PeakID (cmd=getDiffExpression.pl ./peakQuanF0/allRawTags_filtered_peaks.txt balbcj_atac balbcj_atac balbcj_atac balbcj_atac c57bl6j_atac c57bl6j_atac c57bl6j_atac c57bl6j_atac -peaks)	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type	/home/h1bennet/strains/data/ATAC/control_cohort2/balbcj_Male_Kupffer_ATAC_Chow_healthyoung_BALB1_TDT_l20210213_TCATGAGC_CTCTCTAT_S15_L001_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam	/home/h1bennet/strains/data/ATAC/control_cohort2/balbcj_Male_Kupffer_ATAC_Chow_healthyoung_BALB2_TDT_l20210213_CCTGAGAT_TATCCTCT_S16_L001_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam	/home/h1bennet/strains/data/ATAC/control_cohort2/balbcj_Male_Kupffer_ATAC_Chow_healthyoung_BALB3_TDT_l20210213_TAGCGAGT_GTAAGGAG_S17_L001_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam	/home/h1bennet/strains/data/ATAC/control_cohort2/balbcj_Male_Kupffer_ATAC_Chow_healthyoung_BALB4_TDT_l20210213_GTAGCTCC_ACTGCATA_S18_L001_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam	/home/h1bennet/strains/data/ATAC/control_cohort2/c57bl6j_Male_Kupffer_ATAC_Chow_healthyoung_C571_TDT_l20210213_TACTACGC_AAGGAGTA_S19_L001_trim30	/home/h1bennet/strains/data/ATAC/control_cohort2/c57bl6j_Male_Kupffer_ATAC_Chow_healthyoung_C572_TDT_l20210213_AGGCTCCG_CTAAGCCT_S20_L001_trim30	/home/h1bennet/strains/data/ATAC/control_cohort2/c57bl6j_Male_Kupffer_ATAC_Chow_healthyoung_C573_TDT_l20210213_GCAGCGTA_CGTCTAAT_S21_L001_trim30	/home/h1bennet/strains/data/ATAC/control_cohort2/c57bl6j_Male_Kupffer_ATAC_Chow_healthyoung_C574_TDT_l20210213_CTGCGCAT_TCTCTCCG_S22_L001_trim30	balbcj_atac vs. c57bl6j_atac Log2 Fold Change	balbcj_atac vs. c57bl6j_atac p-value	balbcj_atac vs. c57bl6j_atac adj. p-value
Merged-chr5-122769003-4	chr5	122768902	122769102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 1 of 16)	intron (NM_001199676, intron 1 of 16)	10408.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	5.16160025711557	5.61386326013099	5.22368513332076	5.0109323150104	5.02515632279842	5.060910837599	5.07315812726967	4.57510570177182	-0.600408057473897	0.0825572223908865	0.311990471598668
Merged-chr7-80269644-4	chr7	80269513	80269713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178070)	promoter-TSS (NM_178070)	-42.0	NM_178070	233405.0	Mm.322870	NM_178070	ENSMUSG00000030534	Vps33b	-	vacuolar protein sorting 33B	protein-coding	5.82503887538218	5.94882853294389	5.75287833004144	5.68439642225186	6.04030340868444	5.82463716398603	6.03170373827058	5.64477166517965	0.168385123579903	0.512553536683623	0.775904895525385
Merged-chr9-14074446-4	chr9	14074345	14074545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-201856.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	5.80182043509869	6.32475300185433	6.50440203973772	6.57573111940894	6.44715854081709	6.01041142313915	6.5325511019659	6.34860717433954	0.0104998394345626	0.968856826986604	0.988819650828474
Merged-chr1-184735266-4	chr1	184735168	184735368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2775.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	5.28365523727245	5.12665040278897	5.25310469970238	5.36193668529318	5.45284040349269	5.45927454311261	5.71770443590848	5.11550989265025	0.335674618849134	0.25946598931967	0.571250530584125
Merged-chr7-35647514-4	chr7	35647423	35647623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019746)	promoter-TSS (NM_019746)	-41.0	NM_019746	56330.0	Mm.371609	NM_019746	ENSMUSG00000030417	Pdcd5	2200003D22Rik|AA408513|Tfar19	programmed cell death 5	protein-coding	7.4966972946229	7.52380348242622	7.27607118560653	7.48890941322291	7.59310911808675	7.46447470756485	7.47926497084396	7.57330519964527	0.103232237889446	0.550780455379961	0.798696180778043
Merged-chr7-104296921-3	chr7	104296798	104296998	+	804.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8792.0	NM_001310602	667823.0	Mm.482375	NM_001310602	ENSMUSG00000060441	Trim5	EG667823|Gm8833	tripartite motif-containing 5	protein-coding	3.01142582090746	3.12324807283762	2.92979722622806	2.65456223649752	4.03486675121638	3.72038495611169	3.98000665382478	3.87674860706821	3.87360620308177	4.76369123586023e-11	3.84003146633404e-09
Merged-chr14-74764340-3	chr14	74764256	74764456	+	872.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 19 of 19)	intron (NM_001033439, intron 19 of 19)	32059.0	NM_016903	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	3.57338612765701	3.52412550353071	3.08472809224243	3.44640229853986	3.61619356606303	3.58277622585237	3.33984806414554	3.62173863667973	0.410272895810122	0.4376782778597	0.725867381341029
Merged-chr13-17977856-4	chr13	17977745	17977945	+	965.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15506.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	4.93673533915197	4.81014133148093	4.9024224730292	4.83237032135894	5.18078134679031	4.9266544915718	4.84320266196734	4.86306182751785	0.21119906111538	0.512156835284818	0.775701492755237
Merged-chr5-136623336-4	chr5	136623249	136623449	+	891.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-55859.0	NM_001291238	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	3.72836738595651	4.18023017384704	4.01536961540359	3.93387280465246	3.87894710767472	4.6185439412158	3.99827874106194	4.61851679568358	0.859017936938457	0.0684569165814694	0.27939764136195
Merged-chr11-70475667-2	chr11	70475567	70475767	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-15683.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	4.60411523564065	4.66317349919514	4.75339196839748	4.23268192656707	4.93128097863478	4.56772743089083	4.37176980676248	4.47802490552218	0.11727537810452	0.766593833819879	0.908660493187862
Merged-chr15-94589888-4	chr15	94589770	94589970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008971)	promoter-TSS (NM_008971)	-46.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	7.83678137264816	7.92834532109117	7.44375924019667	7.77934352179734	8.26121625405301	8.19455425379048	8.29909421690498	8.10765976214963	0.587074069197899	0.000792015471269034	0.0111478879235631
Merged-chr2-118861922-4	chr2	118861809	118862009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019826)	promoter-TSS (NM_019826)	-91.0	NM_019826	56357.0	Mm.6635	NM_019826	ENSMUSG00000027332	Ivd	1300016K07Rik|6720455E18Rik|AI463340	isovaleryl coenzyme A dehydrogenase	protein-coding	7.84737522161578	7.7629769937585	7.62287890204406	7.76589491539387	7.52834161091732	7.37867747484809	7.43176130939652	7.4143048482335	-0.408682310036719	0.0156982186088116	0.108252616000446
Merged-chr11-51915724-4	chr11	51915616	51915816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51915.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	7.16065173274968	7.34381492124694	7.09262177433902	7.18396582560891	7.12937822728463	7.13194580396612	7.14812777805408	6.66918821990449	-0.222103475453878	0.273810755861379	0.585501120300931
Merged-chr3-137865751-4	chr3	137865658	137865858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316995, intron 3 of 4)	CpG-9623	1271.0	NM_016750	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	7.13821601393797	7.21541222538109	6.53393531713361	6.65354617492258	7.04121403467857	7.37037935760366	7.21015305284469	6.74457440618153	0.269995536362247	0.277322746113764	0.589486822720886
Merged-chr8-82399160-3	chr8	82399015	82399215	+	802.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	3471.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	3.69773509339247	3.50929211969541	3.64830286404124	3.4336045868769	3.65984082600775	3.71335613411697	3.52836444848231	3.42477079757552	0.0714401947302133	0.883822750097258	0.956344438085205
Merged-chr5-35583577-4	chr5	35583476	35583676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357020, exon 1 of 19)	5' UTR (NM_001357020, exon 1 of 19)	542.0	NM_030721	80911.0	Mm.291503	NM_030721	ENSMUSG00000029098	Acox3	BI685180|EST-s59|PCOX	acyl-Coenzyme A oxidase 3, pristanoyl	protein-coding	6.55732016063587	6.77343625943508	5.75746475191559	6.47583770399612	6.73656316917029	6.58562872719453	6.35882021452359	6.19479376667916	0.0642205406223845	0.82099175294112	0.931465833281731
Merged-chr5-118468243-3	chr5	118468153	118468353	+	878.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92466.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	4.39825671525402	4.02603105667611	4.46806414030943	4.06089278032689	3.83485215216192	3.56046805516052	3.86278284306505	3.70598909602388	-1.37092642470587	0.00386172189659706	0.0390002132346597
Merged-chr10-31609555-3	chr10	31609502	31609702	+	954.6587519999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001146349, exon 1 of 6)	5' UTR (NM_001146349, exon 1 of 6)	123.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	4.0439510499077	3.87197818578659	4.16702318801236	4.33940412327892	3.43492101393195	3.57578274635737	3.44644648116915	3.58380519780861	-1.92703854460288	0.00011606181849033	0.00229604340698255
Merged-chr1-184048862-4	chr1	184048761	184048961	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	14480.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	4.52995697794783	4.70383487489007	4.66178336289181	4.85094422899451	5.13831452902187	4.79616107317009	4.75835251649848	5.13769166687114	0.549308735826404	0.110675369700522	0.367477888583017
Merged-chr4-139382140-3	chr4	139382055	139382255	+	776.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160319, intron 1 of 105)	B3A|SINE|B2	1496.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	3.53773837073839	3.50577874888202	3.59213828291475	3.54427871752207	3.57617259212446	3.76041779202609	3.41153616459489	3.64176332286753	0.182265223735347	0.704862355233885	0.881499008770692
Merged-chr12-26071765-3	chr12	26071684	26071884	+	819.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138721.0	NR_131149	629481.0	Mm.390460	NR_131149	ENSMUSG00000113550	Gm29687	-	predicted gene, 29687	ncRNA	3.98058367861091	3.64228781685503	4.22921696808696	3.71808956490308	3.93188059418476	3.60417551353615	3.60025509852253	4.06686048275199	-0.238213585059292	0.631821113995298	0.843565602967326
Merged-chr14-45041244-2	chr14	45041144	45041344	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53133.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	2.30559675505588	2.5502634625567	2.38173139866659	2.13082712731481	2.61921076131891	2.69515468182448	2.57719860733337	2.7064293127691	1.73259435667067	0.0182329485119514	0.120367560947152
Merged-chr4-136123219-4	chr4	136123141	136123341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20581.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	6.78504591452172	7.102207291163	6.8008352488471	7.02114590499612	6.85498489391536	7.12763510945773	6.928769312535	7.05704150983472	0.0648693994240778	0.746863938563381	0.900253617240193
Merged-chr17-21384256-1	chr17	21384156	21384356	+	616.0	f1_c57bl6.idr	intron (NM_172486, intron 1 of 3)	(CAA)n|Simple_repeat|Simple_repeat	508.0	NM_172486	210503.0	Mm.33443	NM_172486	ENSMUSG00000062743	Zfp677	A830058L05Rik|Tce8	zinc finger protein 677	protein-coding	4.29904945857297	4.15976420563819	4.11168732743847	4.08806010396253	4.15532112880785	4.47156896160406	4.28033102711275	4.60545583250847	0.539155241827849	0.173362905228838	0.467381192003767
Merged-chr1-119837566-4	chr1	119837464	119837664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019933)	promoter-TSS (NM_019933)	-493.0	NM_019933	19258.0	Mm.458796	NM_019933	ENSMUSG00000026384	Ptpn4	PTPMEG|Ptn4|TEP|TEP/mPTPMEG|hPTP-MEG	protein tyrosine phosphatase, non-receptor type 4	protein-coding	7.8920960365679	7.67935816237862	7.81912841578459	8.14753287344594	7.85102359881059	7.74318046930014	8.0543521431993	7.75910135579843	-0.0602863079976645	0.746129408006921	0.89996517881998
Merged-chr11-62005709-4	chr11	62005614	62005814	+	887.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	48951.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	4.42977757090162	4.83750516614141	4.95691551708188	4.40629239442115	4.445294885341	4.81742251649932	4.62250026315166	4.64122260189017	-0.0819465039366425	0.829076743019218	0.934339035645423
Merged-chr12-99789788-4	chr12	99789709	99789909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030172, intron 5 of 5)	intron (NM_030172, intron 5 of 5)	93633.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	6.72995215241325	6.19812227863185	6.52286270521329	6.75240535349871	6.52914210458785	6.45016801491257	6.40624394909507	6.14426900947486	-0.26576182453752	0.270005054170795	0.581767511754897
Merged-chr11-96075846-4	chr11	96075761	96075961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161419)	promoter-TSS (NM_001161419)	-167.0	NM_007506	11951.0	Mm.258	NM_007506	ENSMUSG00000006057	Atp5g1	-	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)	protein-coding	8.66958396376237	8.78415789065169	8.4656607649367	8.37194917157548	8.77818369884103	9.11757308663764	8.65749458260898	8.6698181444645	0.298402988762862	0.0987228018106692	0.344426542009686
Merged-chr9-116175255-4	chr9	116175177	116175377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009371)	promoter-TSS (NM_009371)	86.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	7.80391059738843	8.17600010695089	7.7896242751691	7.78196884249991	7.72891392977051	8.00571652259788	7.97346144956991	7.7363834056378	-0.0446893297827181	0.808676566866746	0.926138274128125
Merged-chr10-41937385-4	chr10	41937258	41937458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 12 of 17)	intron (NM_001034858, intron 12 of 17)	49919.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	5.04346042418131	5.25488546795991	5.41197687872365	4.8862837510793	5.25302269803345	5.22025971119545	5.38467123036038	5.07590435930353	0.169253463421319	0.590870702389731	0.821308891684867
Merged-chr7-28444795-4	chr7	28444697	28444897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039192, intron 4 of 6)	intron (NM_001039192, intron 4 of 6)	3860.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	7.73885992999285	7.44729130164999	7.51694752889901	7.30484723631291	7.29351619725247	7.46663443324459	7.50664331800237	7.35791437869998	-0.128208905219833	0.495893628382025	0.766025331518119
Merged-chr2-104732295-4	chr2	104732184	104732384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144804, intron 1 of 8)	intron (NM_144804, intron 1 of 8)	10517.0	NM_144804	211896.0	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding	6.5138775253613	6.61375420847431	6.96426910629324	7.00709300041439	6.55934767595156	6.79236967488769	6.67425546242055	6.89696369492571	-0.10253034305197	0.650090002674584	0.853039400580308
Merged-chr7-90138577-4	chr7	90138487	90138687	+	963.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	8374.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	5.65089894574422	5.14128045528479	5.67524012031978	5.74180445560955	5.07636234807805	5.00052036116774	5.50011794678506	5.26547707117731	-0.632737602376543	0.0459523029360884	0.219991859744945
Merged-chr4-128925157-4	chr4	128925057	128925257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	37298.0	NM_172875	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	5.18726062659252	5.12616618328794	5.18814444865388	4.78622037187931	5.63369880724618	5.83500349134956	5.32024957798693	5.72679135637709	1.03513544962825	0.000601354669616182	0.00895477490138289
Merged-chr6-123267063-4	chr6	123266967	123267167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010819, exon 3 of 6)	exon (NM_010819, exon 3 of 6)	4960.0	NM_010819	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	5.56789122727127	5.33290028449576	5.46081189544312	5.20930027237592	5.68066567493934	5.42347937911485	5.51478064532737	5.59052967627729	0.314415115383747	0.259768880495169	0.571563806638815
Merged-chr1-166409840-4	chr1	166409740	166409940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142948)	promoter-TSS (NM_001142948)	-12.0	NM_175170	71592.0	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	7.01240010159679	7.06811797791075	6.9752820188395	6.91942056938393	7.1985066808536	7.13927185847404	7.31665549666362	7.0700521709763	0.268112187548663	0.147113001844195	0.42788514025699
Merged-chr13-81233069-4	chr13	81232942	81233142	+	965.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	MIR|SINE|MIR	268968.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	4.97717639535581	4.68551149934101	5.41273323118577	5.93905735084611	4.93579668656275	5.11902182704269	4.75657692748663	5.24058391132998	-0.619587508205512	0.127683792989776	0.397568009677132
Merged-chr9-110525910-4	chr9	110525817	110526017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010628)	TTS (NM_010628)	-6680.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	6.11425253318542	6.34199694683907	6.23993728987028	6.53385541115443	6.17773898154997	6.5818866518211	6.4888950838707	6.48560924430756	0.147729924912873	0.534220751267397	0.789066961676578
Merged-chr3-137952999-4	chr3	137952905	137953105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	28544.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	5.27538822516453	4.94485665438307	5.14510923010961	5.11995780112609	5.66565786275808	5.59645633713532	5.55128689788026	5.33343975999632	0.758687719477001	0.00805492155925012	0.0675393169591076
Merged-chr14-10546138-4	chr14	10546041	10546241	+	807.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	-92683.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	3.84990736017569	3.86221008320372	3.58000886594723	3.67999315721852	3.85018716704682	3.8681521427939	3.68065195326954	3.98651309087648	0.309165705815158	0.495137884688422	0.765544537729018
Merged-chr14-14352767-2	chr14	14352667	14352867	+	932.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008369, intron 10 of 11)	intron (NM_008369, intron 10 of 11)	6272.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	2.39428494538254	2.46743996984093	2.60883729201539	2.49882903198092	2.48347394622027	2.96023001254367	2.72384818009561	2.6719073833097	1.11630246035781	0.10291007143433	0.352236003416174
Merged-chr10-58452460-4	chr10	58452365	58452565	+	757.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011240, intron 2 of 28)	intron (NM_011240, intron 2 of 28)	5613.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	3.36526107578504	3.78805357584082	3.16199117481198	3.71819964253179	3.6598005156724	3.60133973584844	3.72976159336451	3.59454319371575	0.324299989011839	0.547312491081844	0.796783882293747
Merged-chr5-21355048-5	chr5	21354930	21355130	+	782.4571530000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	-17643.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	3.69981783703581	3.22481299770729	3.4494467562023	3.46884913118442	3.43808847741111	3.3840668709239	3.32165916896458	3.60376250847047	-0.0927648121510088	0.858694882188909	0.946576014812915
Merged-chr1-172311485-6	chr1	172311424	172311624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080419)	promoter-TSS (NM_080419)	-843.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	7.6460875669281	7.92213176950912	7.52738029239991	7.76319010330763	7.30877740319939	7.3427175479015	7.11672780555264	7.04669113390379	-0.686560968917614	0.000283783072963158	0.00484979480202752
Merged-chr4-135203420-4	chr4	135203328	135203528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69332.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	6.96541487391014	7.45615535699079	7.60757356419869	7.14699093907932	7.3829086561493	7.06120029622902	7.35030121727392	6.98840185770853	-0.13708080392721	0.53752034129673	0.791120308778792
Merged-chr12-105972518-3	chr12	105972392	105972592	+	741.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-37771.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	3.28845950694251	3.12809131698288	3.21889456542226	3.37971568845646	4.09005092900251	3.81977697383369	3.90909568755774	3.74545224470877	2.00479279144124	0.000148196101966947	0.00282346101228728
Merged-chr2-11438423-4	chr2	11438336	11438536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39936.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	5.99051070603317	5.58278728342565	6.28581528370212	6.15532850121518	5.38807219158713	5.43689715609692	5.65921627766817	6.00782923481308	-0.632864058891096	0.0353095788908394	0.186418967205983
Merged-chr8-105453459-4	chr8	105453383	105453583	+	807.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033371, intron 6 of 10)	intron (NM_001033371, intron 6 of 10)	17939.0	NM_026481	67971.0	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	4.30000110050885	4.07840502906325	4.04684889297749	3.9445009983	4.12521834522958	4.01967352858993	3.77399929655305	3.84216546402693	-0.362887089780252	0.409343669892118	0.704976362914374
Merged-chr15-64083376-4	chr15	64083274	64083474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22926.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	7.03768459464026	7.08017721623787	7.11137918227131	7.22660888901039	7.01224151285012	7.11239324108058	7.28991276628876	7.18595857495056	0.0356104165013673	0.849470417556567	0.943128665229694
Merged-chr17-44783336-4	chr17	44783232	44783432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178652, intron 1 of 11)	intron (NM_178652, intron 1 of 11)	6166.0	NM_178652	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	6.65180925613365	6.15927074380866	6.34191957362857	6.61359811691034	6.4163489704865	6.29729135306263	6.54471434184267	6.52661575746841	-0.0214548584196986	0.926360433113743	0.972944316427426
Merged-chr1-164440361-3	chr1	164440253	164440453	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009721, intron 4 of 5)	intron (NM_009721, intron 4 of 5)	18002.0	NM_009721	11931.0	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	4.0842747380707	3.97394605253944	4.56837117294663	5.08094822237319	3.86046080615546	4.26518670005216	4.5093431576077	4.18461936494633	-0.682863082437493	0.173812884664612	0.467956249245117
Merged-chr4-6369635-1	chr4	6369535	6369735	+	578.0	f0_balb.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	3955.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	3.45752059448131	3.1265677481596	3.34692068557209	3.35266849573761	3.39584957687995	3.46048488424038	3.44404528186426	3.50807713812159	0.433125773440964	0.397559398769973	0.695946495291506
Merged-chr12-4840247-4	chr12	4840141	4840341	+	850.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016863, intron 1 of 3)	intron (NM_016863, intron 1 of 3)	1354.0	NM_016863	14226.0	Mm.20453	NM_016863	ENSMUSG00000020635	Fkbp1b	12.6kDa|AW494148|FKBP12.6|calstabin2	FK506 binding protein 1b	protein-coding	4.64508368265228	4.54432417403624	4.52653988586637	4.80381073456816	4.54299447981411	4.61481508311129	4.28122288060895	4.68013163621828	-0.241344923168322	0.508565859205193	0.773537739427407
Merged-chr2-72196731-3	chr2	72196619	72196819	+	944.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 8 of 26)	ID_B1|SINE|B4	-88918.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	3.34964270958139	3.37520080652904	3.26693531881686	2.54975464609749	4.83034924352976	4.58980608473699	4.86587072010529	4.68680378457568	6.09262907955994	3.69719910260382e-18	9.53488894653035e-16
Merged-chr1-172586587-4	chr1	172586455	172586655	+	900.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029084, intron 2 of 4)	intron (NM_029084, intron 2 of 4)	4013.0	NM_029084	74748.0	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	4.28705315100421	4.15879895925928	4.1242715873004	4.01245977294044	5.10639232261984	4.85991972853725	5.2048445762896	4.85890623837323	1.93917676813768	4.50724264631845e-08	2.08867854376498e-06
Merged-chr13-52035937-4	chr13	52035833	52036033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60808.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	6.87077995087019	6.17102445878639	7.08616291489484	7.24744395285363	6.56574597323852	6.4044264608628	6.71487300932112	6.50917647593372	-0.508928748420473	0.0621437165592934	0.263732864355709
Merged-chr12-24592535-4	chr12	24592427	24592627	+	850.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145890, intron 6 of 13)	intron (NM_145890, intron 6 of 13)	11808.0	NM_145890	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	3.82557468653816	4.6618142432863	4.09547469098527	4.05531927748314	4.25653455384414	4.17047374797826	4.17089160881719	4.09303127509445	-0.0568574745184284	0.899279721744913	0.962501700242255
Merged-chr11-59227002-4	chr11	59226911	59227111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	1151.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	6.12379453919793	6.44143713153388	5.69540088086836	6.46606257447634	6.07509546313861	6.15118341776084	6.15247916067549	5.74680791426197	-0.293262332719846	0.293047590730977	0.60553679205796
Merged-chr15-79892360-4	chr15	79892299	79892499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160415)	promoter-TSS (NM_001160415)	-9.0	NM_001160415	80287.0	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Gm20117|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	6.85511160881362	6.82991492502269	6.42903767506929	6.72919293324092	6.41354718898729	6.29048101289557	6.14576355486144	6.21501032271427	-0.65524976551906	0.00360346158018691	0.0368945327698683
Merged-chr14-50930476-4	chr14	50930423	50930623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310507, intron 1 of 5)	CpG	326.0	NM_001310506	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	6.0295913504754	6.4607044637796	6.27363423248115	6.50159852551809	5.99324371404208	6.18518940678886	5.85926390665726	6.26914089923841	-0.398104032877952	0.108852132724501	0.364187751228827
Merged-chr13-94788983-4	chr13	94788915	94789115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009321)	promoter-TSS (NM_009321)	72.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	6.21401776291889	6.46012863521281	6.7804700244862	6.14650198523182	6.0359666644287	6.37172303187381	6.20286007472013	6.19067761294563	-0.322667381596452	0.204546170770669	0.507809001753878
Merged-chr4-107313824-1	chr4	107313724	107313924	+	657.333313	f0_balb.idr	promoter-TSS (NM_145550)	promoter-TSS (NM_145550)	-539.0	NM_145550	230584.0	Mm.29118	NM_145550	ENSMUSG00000057375	Yipf1	C030002N13Rik	Yip1 domain family, member 1	protein-coding	3.5383719859595	3.40313338209883	3.72853390958581	3.40509396526207	3.29883524405022	3.30023206078059	3.24269646055999	3.48466436264665	-0.64531334588403	0.219703394020841	0.527345281266327
Merged-chr8-70562000-3	chr8	70561905	70562105	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	22330.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	5.05525546233312	5.56843557849998	5.31556574697127	5.39779511227098	4.22451614653538	4.48742505295032	4.38621071058892	4.5973305364824	-1.95284367294847	5.1956898215536e-08	2.36611647989996e-06
Merged-chr5-36466096-4	chr5	36465988	36466188	+	864.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024478, intron 1 of 3)	intron (NM_024478, intron 1 of 3)	903.0	NM_024478	17713.0	Mm.21535	NM_024478	ENSMUSG00000029198	Grpel1	AA408748|mt-GrpE#1|mt-Grpel1	GrpE-like 1, mitochondrial	protein-coding	4.08701670251206	4.136545154652	4.08760173544792	4.28055886808732	4.29244202496261	4.30968194224058	4.25485078989549	4.39490476529494	0.368602971976054	0.345512445674071	0.653814445583802
Merged-chr16-59421046-4	chr16	59420938	59421138	+	751.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081190, intron 2 of 8)	intron (NM_001081190, intron 2 of 8)	13656.0	NM_001081190	328699.0	Mm.451970	NM_001081190	ENSMUSG00000074991	Gabrr3	-	gamma-aminobutyric acid (GABA) receptor, rho 3	protein-coding	4.07806727234347	3.59864565714167	3.60843391103194	4.14596966145014	3.95647026175496	3.90490813921089	3.92332873692523	4.20079876743834	0.285918521600945	0.552129072122659	0.799371172712563
Merged-chr18-46604486-4	chr18	46604377	46604577	+	731.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010120, intron 2 of 2)	intron (NM_010120, intron 2 of 2)	6773.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	3.65513500895573	3.98674630255569	3.81752578844603	3.72590944931244	3.86558325300029	3.77374202649544	3.6419178673961	4.08770407928617	0.154661254682698	0.737173700285008	0.896349150297427
Merged-chr7-97356449-2	chr7	97356349	97356549	+	994.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-15168.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	3.56643582496041	3.44065175191317	3.51078819778098	3.83153854695508	3.97031727352725	3.62588937290363	3.37946388582194	3.56499062047629	0.17243392522591	0.742967513435274	0.898691548174051
Merged-chr7-116446886-4	chr7	116446777	116446977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3419.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	7.98135967998911	7.95019913719835	7.98953579759143	8.19245583100834	7.86518328516138	7.98334303702148	8.1465130238554	7.96351795907391	-0.0627966230227836	0.706903418745835	0.882299855212431
Merged-chr16-20717738-4	chr16	20717653	20717853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145632)	promoter-TSS (NM_145632)	-73.0	NM_145632	245841.0	Mm.288730	NM_145632	ENSMUSG00000021018	Polr2h	-	polymerase (RNA) II (DNA directed) polypeptide H	protein-coding	8.50970326377999	8.73955865316372	8.45042530003364	8.65969153274465	8.61143133408242	8.65359435610643	8.80700211558574	8.49069569290597	0.0583662336118361	0.713468974428211	0.885386661508867
Merged-chr11-34770752-4	chr11	34770681	34770881	+	935.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	13124.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	4.67324476593461	4.49902983424417	4.48715366386195	4.26994228155086	4.34318972190313	4.44201633160897	4.34024167380943	4.48426916409629	-0.173999044246826	0.644982470887771	0.850580044008609
Merged-chr14-55734109-3	chr14	55734016	55734216	+	854.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11568.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	3.00915652790304	3.34252256072203	3.07847238412816	3.10096314697247	3.50784954613833	3.25566667297693	3.55997832922146	3.37651126364132	1.06456869802073	0.0496514503088796	0.2307482751068
Merged-chr19-37307985-4	chr19	37307882	37308082	+	918.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031156, intron 10 of 23)	L1M5|LINE|L1	22631.0	NM_031156	15925.0	Mm.28366	NM_031156	ENSMUSG00000056999	Ide	1300012G03Rik|4833415K22Rik|AA675336|AI507533	insulin degrading enzyme	protein-coding	4.45189720171417	3.91709057260107	4.25777650723309	4.10848099729069	4.2390217732749	4.04482294742811	4.15206131079573	3.9199981180808	-0.228925669196265	0.593272681345363	0.822623527983044
Merged-chr17-65745068-4	chr17	65744985	65745185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	MTE2a|LTR|ERVL-MaLR	27667.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	5.85922409437329	5.58240577338009	5.69947937645123	5.81921241085056	6.68970232237712	6.64382124056412	6.48166737764679	6.2253127599426	1.18886326187719	1.02886640487254e-06	3.59693918626829e-05
Merged-chr13-99344705-4	chr13	99344600	99344800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026873)	promoter-TSS (NM_026873)	-22.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	7.57573206116597	7.41853645117551	6.99119341874072	7.39764536948627	7.16333329668698	7.38799319132517	7.37053987652842	6.97286695161796	-0.179988866136343	0.390794497166265	0.690712194919487
Merged-chr1-186221722-3	chr1	186221706	186221906	+	938.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104496.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	3.16606553031118	2.89076489090933	3.39754216683005	3.14260952353007	2.54710366475467	2.54640482927433	2.59713672891584	2.60272372195196	-3.33792242722267	7.9939871845567e-05	0.00167996461118855
Merged-chr4-59862583-4	chr4	59862495	59862695	+	977.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 2 of 8)	L1_Mus4|LINE|L1	52461.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	5.3427823301005	5.55236800925424	5.55256154238545	5.27775775344752	5.01071690667918	5.1627702368795	4.9979006328159	4.86374091612604	-0.777767854180234	0.0106138738112098	0.0824135403085091
Merged-chr14-37165417-4	chr14	37165306	37165506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30084.0	NM_078478	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	6.34414345765797	6.63679298755873	5.98156442600239	6.33898459264239	6.61634836944158	6.87453583707584	6.31275280661745	6.53028629982942	0.36261905201593	0.14404665855872	0.422730928290371
Merged-chr1-88005144-4	chr1	88005037	88005237	+	804.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033291, intron 2 of 27)	intron (NM_001033291, intron 2 of 27)	3414.0	NM_001198573	227334.0	Mm.80484	NM_001033291	ENSMUSG00000005501	Usp40	B230215L03Rik|C730029K03	ubiquitin specific peptidase 40	protein-coding	3.38119265085129	3.40890467328203	3.49138087439641	3.71192816567878	3.5099181243222	3.16740317614842	3.25095309153245	3.54085373519232	-0.45103594413189	0.405172528036355	0.70215896995836
Merged-chr17-74295164-7	chr17	74295054	74295254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133771)	promoter-TSS (NM_133771)	-291.0	NM_133771	76890.0	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	5.69671916105052	5.71551508029334	5.26134244153761	5.4911422934783	6.0321562830158	6.48726380846522	6.3599753617321	5.66691694284436	0.989002048557308	0.000756559891949607	0.0107660485833145
Merged-chr9-7571734-4	chr9	7571632	7571832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310717, intron 1 of 9)	intron (NM_001310717, intron 1 of 9)	336.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	5.10785773653774	5.30612534979012	5.14295094282526	4.86641989708974	5.50067221948642	5.6665316670797	5.5167064957174	4.91934483787368	0.59396692903928	0.0679084839763868	0.278113074047863
Merged-chr6-30460084-4	chr6	30459978	30460178	+	872.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131049)	promoter-TSS (NR_131049)	-907.0	NR_131049	69337.0	Mm.396168	NR_131049	ENSMUSG00000085470	1700012C14Rik	-	RIKEN cDNA 1700012C14 gene	ncRNA	4.98575513849311	4.98290934562571	4.847205850517	4.65498368248483	5.08133594257705	4.5973875652614	5.17239265950597	4.68772644328826	0.107882395029645	0.760243196664696	0.90597557094845
Merged-chr8-71537539-4	chr8	71537440	71537640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198095)	promoter-TSS (NM_198095)	-103.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	7.38497981508727	7.73283178081366	7.21892664100452	7.12665716226166	7.32065874871977	7.39614120870666	7.07821053954931	7.25782941970242	-0.153456614844683	0.469120711545233	0.748095998770725
Merged-chr3-127762073-4	chr3	127761982	127762182	+	828.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	18445.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	3.70899533790427	3.77389087196189	3.65795323628895	3.72956885726374	3.74131763246685	3.47749805520451	3.41685617034494	3.8044623597966	-0.287110876639734	0.553076411646783	0.799974396526481
Merged-chr10-87812851-3	chr10	87812744	87812944	+	904.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45421.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	3.45750243759133	3.72695702509564	3.76637321181337	3.55613272641994	3.27070771649844	3.31540531682864	3.50108687830017	3.71761430368808	-0.563430347442943	0.278121943839823	0.590269003535534
Merged-chr7-29008901-3	chr7	29008799	29008999	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009109, intron 100 of 105)	intron (NM_009109, intron 100 of 105)	26045.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	4.62872049040538	4.6762314601368	4.52812640492131	4.52094764858039	3.43696541303579	3.71359478801332	3.57676806500509	3.90358917636375	-2.69025744464388	4.05748425504714e-08	1.90408081410294e-06
Merged-chr4-117219044-4	chr4	117218951	117219151	+	982.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145637, intron 7 of 12)	intron (NM_001145637, intron 7 of 12)	32866.0	NM_001145637	381544.0	Mm.23504	NM_001033774	ENSMUSG00000060268	Armh1	1700012C08Rik|Gm1661|Gm1662|Ncrna00082	armadillo-like helical domain containing 1	protein-coding	5.67223586500195	5.14543377767434	5.27639488157419	5.21207155831052	5.43294633153137	5.4510642328	5.050375245689	5.39129690282923	0.0205623547548715	0.946744107323622	0.98095209334417
Merged-chr5-19888655-4	chr5	19888560	19888760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 2 of 22)	intron (NM_001170746, intron 2 of 22)	-18858.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	6.46477698198841	6.53114998684809	6.51728456829865	6.84517040222288	6.45409959314353	6.75870069015097	6.71232867502483	6.51263323192815	-0.00925082492143406	0.96704648322344	0.988445986808369
Merged-chr9-21728540-4	chr9	21728434	21728634	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252659, intron 1 of 17)	RMER4B|LTR|ERVK	4958.0	NM_010700	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	5.50962906198714	5.80808146792858	5.32475754394669	5.65466246055379	6.16398456906493	6.01237623350867	5.45396736078028	5.2874069837905	0.330129362543297	0.308096193775031	0.620472469916053
Merged-chr2-174438961-4	chr2	174438849	174439049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022325)	promoter-TSS (NM_022325)	90.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	7.87959407611322	7.85986779331297	7.71644089799887	7.75662662142741	8.18269754933174	8.1226930786038	8.1531371105321	7.83827094758394	0.364118431910456	0.0302089086624576	0.168066274010089
Merged-chr6-121110360-4	chr6	121110225	121110425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270475, intron 1 of 31)	intron (NM_001270475, intron 1 of 31)	20697.0	NM_001270475	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	6.99091567581864	6.95992175383811	7.20800191129671	6.53736521855149	6.84614478598064	7.35229210002181	6.65042872759887	6.87035575375452	0.0251196529520358	0.919371054866471	0.970286153940659
Merged-chr4-41356937-4	chr4	41356835	41357035	+	841.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355508, intron 1 of 6)	B4|SINE|B4	4972.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	3.62317492949594	3.58833067021432	3.82519184761906	3.79534661317602	3.73354183467274	3.68335729869284	3.71327759311037	3.56613498202886	-0.11958592348877	0.797886601346267	0.921862017583033
Merged-chr12-87261652-4	chr12	87261569	87261769	+	712.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142581, intron 2 of 18)	MTC|LTR|ERVL-MaLR	2575.0	NM_134044	104799.0	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	3.94268480674771	3.69618159852293	3.48608993672784	3.4170957567881	3.81572577138182	3.88014897263165	3.64233504502083	3.42218764319781	0.18680625624036	0.713373377531126	0.885339563529906
Merged-chr16-4777315-4	chr16	4777197	4777397	+	987.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358082, intron 1 of 5)	intron (NM_001358082, intron 1 of 5)	12165.0	NM_001358078	66626.0	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	4.98327508454502	4.91153660973165	5.01835740517967	5.50202537179118	4.68094117598657	4.80700464322006	5.05924573427741	5.04825805185398	-0.47722678318943	0.175186873407471	0.469895860959054
Merged-chr16-55698725-4	chr16	55698606	55698806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123432.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	8.52424154944355	8.5756262209072	8.67158313875111	8.37952080834202	8.54300563214599	8.69372323114279	8.56581580603917	8.40884037245131	0.0239839279306819	0.878675454608809	0.954698297745423
Merged-chr13-19394338-4	chr13	19394227	19394427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347485, intron 1 of 7)	intron (NM_001347485, intron 1 of 7)	1486.0	NM_024270	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	5.86021906543445	5.7409405746102	5.47628269099683	5.88117790755817	5.66777168430844	5.5293430756045	5.83136562528286	5.66652867579228	-0.13400814162977	0.61466074853728	0.834034302764837
Merged-chr10-98494522-4	chr10	98494414	98494614	+	848.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-142647.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	3.91966635960595	3.77483185206035	4.06866489775588	4.19546811412712	4.05384904901477	4.14415022161679	4.22346579355379	4.01867679111083	0.255117488361408	0.552805513970818	0.799873237323185
Merged-chr1-173427555-4	chr1	173427449	173427649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 1 of 8)	RMER19B|LTR|ERVK	6945.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	7.18294720194145	7.28031436584963	7.35666720341542	7.26494070725824	7.40489232085034	7.34953779267795	7.48017557418196	7.50311431664764	0.219557443163354	0.205744415664751	0.509445159300775
Merged-chr6-136811558-4	chr6	136811465	136811665	+	915.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	3317.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	4.0939861951644	3.73146446602257	3.74274618669667	3.92594507598033	4.60961124495366	4.54673534710468	4.7106664274859	4.63365043349197	1.79267094972937	9.29996477083731e-06	0.00025807492882005
Merged-chr1-180250263-4	chr1	180250150	180250350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128605, intron 1 of 10)	intron (NM_001128605, intron 1 of 10)	-4300.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	6.35493064426794	5.87437288655959	6.3020960132852	6.38035231883401	6.33270988593697	6.12164690099787	6.35805024602205	6.48486750236289	0.125786612700603	0.604263083629993	0.828437960431821
Merged-chr3-69721935-4	chr3	69721822	69722022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133787)	promoter-TSS (NM_133787)	-133.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	7.70465115091122	7.94696868855444	7.70594661588732	7.69090316042423	7.82158274601496	7.86661922846929	7.85204815338026	7.76510595920954	0.0797708084849378	0.630899191420335	0.843094226067586
Merged-chr14-75195738-4	chr14	75195634	75195834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	-46553.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	7.17536172415265	7.6053283076669	7.33820152926683	7.43221165647003	7.19367664595475	7.29508043936706	7.08201338116087	7.14838016653276	-0.298563190970114	0.115517829241177	0.37608944644183
Merged-chr14-64941696-4	chr14	64941605	64941805	+	937.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 1 of 9)	intron (NM_177338, intron 1 of 9)	8152.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	5.05107392589574	4.67206912856192	4.70233365119898	5.10931152869438	5.11023303575647	4.70887429041006	4.59835083443117	4.61632958287866	-0.239998780521263	0.515044304862105	0.777349780527563
Merged-chr15-82353819-1	chr15	82353719	82353919	+	697.0	f1_c57bl6.idr	intron (NM_025987, intron 1 of 2)	intron (NM_025987, intron 1 of 2)	472.0	NM_025987	67130.0	Mm.27570	NM_025987	ENSMUSG00000022450	Ndufa6	14kDa|2700038D15Rik|B230217P19Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	protein-coding	3.72916669434531	3.39062073701609	3.87086367832498	3.24436829473661	3.60698070771577	3.57082157497382	3.71361077328559	3.82312589863577	0.34768025119663	0.503529271199496	0.770436586300708
Merged-chr1-168362658-4	chr1	168362568	168362768	+	819.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183355, intron 2 of 8)	intron (NM_183355, intron 2 of 8)	69501.0	NM_001291509	18514.0	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	3.92886792637621	4.04670307020844	4.06797000974886	3.77123652362373	3.84520775624872	4.00102265709289	3.91278188392251	3.71601051335735	-0.219639669545385	0.620817879564305	0.837500887125037
Merged-chr11-98975459-3	chr11	98975358	98975558	+	752.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177303)	TTS (NM_001177303)	7558.0	NM_178596	353155.0	Mm.453253	NM_178596	ENSMUSG00000047197	Gjd3	Gja11|Gjc1|cx30.2	gap junction protein, delta 3	protein-coding	3.72765768328312	3.49061328803778	3.31703726044504	3.47036558185532	3.3632811014911	3.43012763014883	3.18007535418702	3.43107083903635	-0.528841749602362	0.314415182002622	0.626384801220807
Merged-chr17-48167273-4	chr17	48167167	48167367	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113556)	promoter-TSS (NM_001113556)	-10.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	4.54405849152472	4.38877403497876	4.6965181158702	4.49047008984736	4.52267779447267	4.50123673705506	4.63839666631557	4.54186116444611	0.0516375319918343	0.884557317833405	0.956624037971431
Merged-chr13-44733752-8	chr13	44733656	44733856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	CpG	2485.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	5.80414717876712	6.62683793158678	5.99847508958663	5.81716150393933	6.07632007433624	6.21877947085952	6.28176687390177	6.05967743820568	0.0828702963218977	0.771476208595982	0.910379161490028
Merged-chr11-118362620-3	chr11	118362513	118362713	+	977.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7202.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	4.44907033398997	4.52483536390193	3.83801205817952	4.50677708562458	3.79626062831518	4.0201937060855	3.99022523954957	4.36979796675027	-0.774691261965306	0.093324666616867	0.334150960948329
Merged-chr1-136685487-4	chr1	136685405	136685605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045325, intron 1 of 2)	intron (NR_045325, intron 1 of 2)	1876.0	NR_045325	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	7.84204526070363	7.90287110939178	8.12136034815934	7.95538959597702	7.84987823804336	7.85038022697704	7.88610189538237	8.09759960323475	-0.0455265102785153	0.785650444022003	0.916599143290613
Merged-chr15-63498691-4	chr15	63498567	63498767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19059.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	5.80810691232389	5.57902972549128	6.72390712749249	6.57633118797859	5.68101376199696	5.51787689152809	5.62149786017356	5.90084932239035	-0.914426304137722	0.00655976827765604	0.0579602964186736
Merged-chr6-21973658-4	chr6	21973582	21973782	+	939.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023626, exon 12 of 12)	exon (NM_023626, exon 12 of 12)	-12228.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	3.79663775061657	3.8954419375772	3.90887204598703	4.55697961534195	3.60337782004338	3.66294051326569	4.47759652272268	4.39174792251033	0.0317885181959288	0.954477443775618	0.983764634562976
Merged-chr2-32548145-4	chr2	32548038	32548238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153560, intron 1 of 10)	intron (NM_153560, intron 1 of 10)	12779.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	6.2276695067736	5.80955140259718	5.48765142227189	5.58430254976807	6.15294608255513	6.17319299685981	5.90370052916556	5.73909228382749	0.333504582627061	0.247081997778499	0.558168726560377
Merged-chr5-32754098-4	chr5	32753999	32754199	+	833.604126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177298, intron 3 of 7)	intron (NM_177298, intron 3 of 7)	-7757.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	4.19235757296402	3.89342929270946	4.23752186102685	3.92676189330081	4.30143512852523	4.12188804823932	4.30213800299923	4.39851773917849	0.579655885305969	0.15319393176137	0.43765566401134
Merged-chr16-17921998-4	chr16	17921928	17922128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	6191.0	NM_153150	13358.0	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	7.69008631550016	7.96906225386244	7.84130375386398	7.54275137469232	7.88154417262965	7.8088140686662	7.98903015570504	7.70278769499786	0.113583768684251	0.532315052337757	0.788044784116818
Merged-chr17-71192193-4	chr17	71192074	71192274	+	942.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	L1MC3|LINE|L1	8196.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	4.97936783472592	5.30479058331198	4.78770917203735	4.77596511207801	5.26621952818739	5.38080193525978	5.26878341231167	4.74252390747315	0.405788843324796	0.239301211922631	0.549703033561985
Merged-chr16-93750680-4	chr16	93750557	93750757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357118, intron 6 of 35)	intron (NM_001357118, intron 6 of 35)	20558.0	NM_001357118	70028.0	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	6.17639656149232	6.38737783233604	6.0954382946592	6.47872085353568	5.84669754486548	6.16195142386343	6.2409298346191	6.17307153895398	-0.311275603492479	0.204341713746414	0.507549249494226
Merged-chr12-32693993-3	chr12	32693876	32694076	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-126359.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	4.51861370611953	4.41312749177379	4.48248413243115	4.15569392292556	4.08625816101414	4.36300820866777	4.21627594973231	3.6768485608956	-0.707454411732869	0.109790110256187	0.365876223508832
Merged-chr14-19745992-3	chr14	19745893	19746093	+	980.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5264.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	4.15261889693837	3.5378916600781	4.06873390778515	4.20791870605594	3.87216926216491	3.7167133880095	3.86438725238533	3.87819981510576	-0.521091893392498	0.275462956839749	0.587269829721044
Merged-chr4-141871166-4	chr4	141871055	141871255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	3765.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	7.55163742889034	7.66958617099676	7.12005201853917	7.44726164070803	7.75992405914693	7.8606311881168	7.95057048825802	7.98360052566092	0.555896608533611	0.00308828591398379	0.032706606616791
Merged-chr4-48075736-3	chr4	48075652	48075852	+	668.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015743, intron 7 of 7)	intron (NM_015743, intron 7 of 7)	24506.0	NM_001307989	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	3.31230624340634	3.14192279181349	3.6126836862722	3.31381931998281	2.92777135796907	3.03245026042765	3.2996677721365	3.46952305681846	-0.577422823463973	0.331323522296731	0.642467227210669
Merged-chr13-60673163-4	chr13	60673057	60673257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	70946.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	9.11754842952859	9.26824152011242	9.41118606570868	9.25727696193733	9.19541692393329	9.36792711940102	9.39417236002028	9.12983816383694	0.00960498953410639	0.948621660128405	0.981505068413072
Merged-chr6-122598617-4	chr6	122598516	122598716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134391, intron 2 of 7)	RLTR14|LTR|ERV1	3828.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	5.77270788375454	6.03110883846413	5.22084843880672	4.91593461224431	5.85973732083094	5.99451191527605	5.95924580197621	5.50839886372573	0.478757472265216	0.172822577327869	0.466507574485965
Merged-chr10-4431862-1	chr10	4431762	4431962	+	1000.0	f1_balb.idr	promoter-TSS (NM_024261)	promoter-TSS (NM_024261)	526.0	NM_025343	66084.0	Mm.153111	NM_025343	ENSMUSG00000019763	Rmnd1	0610042C05Rik|AA408137|AI462664|AW536662	required for meiotic nuclear division 1 homolog	protein-coding	3.25673531176532	2.96890464581558	3.31871014906685	3.29791586247353	3.20901195750204	3.43591030815665	3.24516109375334	4.06753073403186	1.06904891388608	0.0747632902658465	0.294884929316375
Merged-chr3-95511970-4	chr3	95511870	95512070	+	936.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12760.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	5.48602561449642	5.48619551552193	5.56146756038173	5.69897858567901	5.10311315176317	4.8362710603946	4.85119398465336	4.8707988964829	-1.17983505868165	0.000113568004700961	0.00225800475044965
Merged-chr15-76538788-4	chr15	76538669	76538869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013909)	promoter-TSS (NM_013909)	-23.0	NM_013909	30840.0	Mm.275279	NM_013909	ENSMUSG00000022559	Fbxl6	AU021795|Fbl6	F-box and leucine-rich repeat protein 6	protein-coding	7.23133293534722	7.09756127151353	6.83112617354465	7.33065884189915	7.25578697234308	7.09439446930962	7.29902602874618	7.17269396352476	0.0849552636888051	0.671089405526703	0.864507019889785
Merged-chr12-8501054-4	chr12	8500980	8501180	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1071.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	4.99782377056681	4.6831614927793	4.60749907463162	5.02775872009195	4.67402189320105	4.46039464905676	4.50127808069527	4.83247809089718	-0.472901049472286	0.190644646167055	0.489995610128056
Merged-chr1-91062581-4	chr1	91062477	91062677	+	960.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	9133.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	5.14445224831652	5.75598056782931	5.11104761583658	4.81040139119714	5.62670197570834	5.32191145417907	5.41776759909842	4.88083036156421	0.172276557204079	0.642125229132981	0.848998712583196
Merged-chr2-153557571-4	chr2	153557481	153557681	+	966.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27610.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	4.95957876611525	5.04016811375592	4.69535570749541	4.33629804776619	5.18744794805642	4.87384464002529	5.41023621650586	4.60562930667367	0.55978297814484	0.151538856511999	0.435236597939721
Merged-chr1-135682446-4	chr1	135682342	135682542	+	806.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-37621.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	4.2500947608304	3.80380355742063	3.47241723545607	3.71738707693341	4.13349231772168	3.65499229415119	3.8550112827442	3.71289834755505	0.0658165638793053	0.897379811153059	0.961706127526628
Merged-chr2-156540770-4	chr2	156540770	156540970	+	887.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013510, exon 22 of 22)	3' UTR (NM_013510, exon 22 of 22)	-6706.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	3.82466795165875	3.83791829989246	3.49257756252466	3.72192392808147	3.72360029000684	3.94559449644791	3.59953531699837	3.91701749349237	0.215810609154189	0.644832604049802	0.850540242207308
Merged-chr13-13889640-4	chr13	13889547	13889747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65027.0	NM_001362404	97884.0	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	7.12217231687979	7.31089361951746	6.96626343827762	7.06248508597007	7.1249975780967	7.20568618286067	6.59478143515058	6.70525424774563	-0.25285769490104	0.25997340847546	0.571732270760985
Merged-chr14-103978985-4	chr14	103978853	103979053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045953, exon 3 of 3)	non-coding (NR_045953, exon 3 of 3)	48189.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	5.82646579958759	5.74607366074089	6.15169641963154	6.32523237047222	5.85340393723735	5.60794352671427	6.08166602882467	6.16617508090787	-0.163395031112473	0.56139968348053	0.80494560024742
Merged-chr8-104630825-4	chr8	104630774	104630974	+	892.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019662, exon 2 of 5)	exon (NM_019662, exon 2 of 5)	447.0	NM_019662	56437.0	Mm.29467	NM_019662	ENSMUSG00000031880	Rrad	REM3|Rad	Ras-related associated with diabetes	protein-coding	4.30887088811981	4.46449627369022	4.80590138757149	4.14609267197548	4.48821607872023	4.3405378600215	4.54144484551017	4.396913375801	0.0151184511087828	0.969780666960331	0.989095984799937
Merged-chr3-69179880-3	chr3	69179787	69179987	+	837.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-42532.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	3.63715940968858	3.61823161735151	3.36550820451485	3.83942666265304	3.12828530299165	3.35087419611124	3.46785657971222	3.53363954062255	-0.893402607634393	0.0984924790754825	0.343994301133918
Merged-chr13-30625335-4	chr13	30625221	30625421	+	852.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10278.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	4.43281924224404	4.42352580215687	4.39088203408753	4.3721889554949	4.39771443367975	4.56324278770764	4.64043808555877	4.15133711972302	0.107376388765808	0.775992810366526	0.91263329448926
Merged-chr4-53158844-4	chr4	53158757	53158957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	1038.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	7.98124637738822	8.22376043380123	8.22980657189784	8.22962228219368	8.06003909505838	7.97142850946661	8.27956906742086	8.05861596601896	-0.0973134911957564	0.555597780531714	0.801591959543503
Merged-chr4-15233890-3	chr4	15233793	15233993	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31927.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	4.84125667899399	4.56985380554725	5.24836384057534	5.69479369308422	3.17058799701637	3.53221899632038	3.5475468933122	3.47867034445601	-7.20850731135048	1.20940820236766e-11	1.08140790505198e-09
Merged-chr7-25651454-4	chr7	25651356	25651556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007533, intron 1 of 8)	intron (NM_007533, intron 1 of 8)	7305.0	NM_007533	12039.0	Mm.25848	NM_007533	ENSMUSG00000060376	Bckdha	-	branched chain ketoacid dehydrogenase E1, alpha polypeptide	protein-coding	6.48218558951126	6.43507292232313	6.01580558275279	6.23060536633846	5.84062006074006	6.00437170194259	5.74936874723063	6.01153019664094	-0.627507663099082	0.0114242544262848	0.0867840988056058
Merged-chr12-102367868-2	chr12	102367768	102367968	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	71945.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	3.39011938388583	3.41757314636509	3.44672803953927	3.41240517454607	3.51847845991432	3.44417687101285	3.4865664249436	3.44487341886432	0.203554782662126	0.678552570805248	0.868119444916004
Merged-chr6-99544102-3	chr6	99543993	99544193	+	823.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23100.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	3.49546795059587	3.7035508321884	3.71709112396405	3.81303695545276	3.6704489691889	3.26792225065669	4.01120601375171	3.71494213201918	0.00401778902219198	0.993834956056309	0.997702270136287
Merged-chr9-104262397-1	chr9	104262297	104262497	+	1000.0	f0_balb.idr	intron (NM_001359740, intron 1 of 56)	CpG	533.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	5.0994971872102	5.12234702189349	5.13342174735751	5.18972381480184	5.1974882548854	5.2063243064573	5.1084427158037	5.25405519187225	0.0947537768063901	0.745007460423031	0.899431814827356
Merged-chr7-126211110-4	chr7	126211012	126211212	+	923.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-10611.0	NM_028816	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	4.17211889110789	4.53433466962721	4.40873070361474	4.6645349126829	4.59001091374874	4.24569041844858	4.38902220504406	4.60495776031296	-0.00341540478133488	0.99303816425823	0.997480504272198
Merged-chr2-174477331-3	chr2	174477251	174477451	+	891.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4410.0	NM_025531	66390.0	Mm.182294	NM_025531	ENSMUSG00000016257	Prelid3b	2310042G06Rik|AA407013|Slmo2	PRELI domain containing 3B	protein-coding	3.1476980930337	3.4062609494609	3.2744881667594	3.34123297401241	3.51766456372001	3.38631273587652	3.37671723394172	3.49356310929719	0.511594036480582	0.320088676326942	0.631859556610888
Merged-chr7-35745348-3	chr7	35745245	35745445	+	908.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	9109.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	2.92836939696214	2.8855982865121	3.24212043294132	3.32976746485373	2.53180020070808	2.97281017462792	2.58720186170459	2.8658784479911	-1.84666773819145	0.0134066243311125	0.0971168444193222
Merged-chr2-121408554-7	chr2	121408545	121408745	+	921.328247	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153075, intron 4 of 12)	Lx5c|LINE|L1	5147.0	NM_153075	212670.0	Mm.384318	NM_153075	ENSMUSG00000033486	Catsper2	-	cation channel, sperm associated 2	protein-coding	4.26808203639542	4.24685561149197	4.17569938190706	4.3470849455492	4.40917995663128	3.97138572636677	4.41601552176984	4.509868377474	0.192806906557212	0.628952169601415	0.841850103289223
Merged-chr12-37241312-4	chr12	37241202	37241402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178767)	promoter-TSS (NM_178767)	-337.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	6.13443749055804	5.88095708002431	5.9925845849438	6.13992799588228	5.98321859428941	5.90632975415812	5.94035050886304	5.85150136501858	-0.194271047995437	0.418057682578015	0.711628236434313
Merged-chr15-101133192-4	chr15	101133088	101133288	+	980.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277259, intron 3 of 11)	intron (NM_001277259, intron 3 of 11)	4666.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	4.49916413737048	4.23038009344266	4.61394613548787	4.02302077773011	4.22085338552319	4.26220680861184	4.62711893627936	4.68138443383121	0.266124568975495	0.523885983998534	0.782647016014066
Merged-chr7-4207324-4	chr7	4207224	4207424	+	923.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30430.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	4.5045867184584	4.87016317968039	5.21830405308127	5.04601404580512	4.70087918361448	4.7312004613778	4.98687832268409	4.83631620129164	-0.254325083633287	0.47315920465519	0.751076002501098
Merged-chr9-59617221-4	chr9	59617121	59617321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038075)	promoter-TSS (NR_038075)	-63.0	NR_038075	67287.0	Mm.439943	NM_029922	ENSMUSG00000025237	Parp6	1700119G14Rik|2310028P13Rik|3110038K10Rik|ARTD17|C030013N01Rik|PARP-6	poly (ADP-ribose) polymerase family, member 6	protein-coding	8.59039623362052	8.72324431366269	8.44373285291002	8.34412069535674	8.33925715457107	8.55384007018313	8.33696635380772	7.99933294639489	-0.264063476645957	0.147211458405296	0.428037761349289
Merged-chr12-100397247-1	chr12	100397147	100397347	+	659.0	f0_c57.idr	intron (NM_001033213, intron 9 of 19)	L1MB7|LINE|L1	120638.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	3.69712097900632	3.90690843617757	3.5907391958119	3.2721497303046	3.82806360101779	3.70865631017617	3.52051646768581	3.64323504605177	0.170588803241926	0.740060694471491	0.897683586969888
Merged-chr9-47531299-7	chr9	47531118	47531318	+	914.380981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	CpG	866.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	4.12461030016194	4.4124110839771	4.61985378128447	4.24765964287362	4.38929317145137	4.19909111114258	3.94972023448904	4.39372157575118	-0.259750715687505	0.532103808214663	0.787872711035769
Merged-chr10-80075483-4	chr10	80075405	80075605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359636)	promoter-TSS (NM_001359636)	-66.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	8.65688516690988	8.75631174336574	8.78128729891154	8.67695777722438	8.65224497875605	8.72404232283516	8.98865765216353	8.47147612985935	0.00532356477169392	0.974278020394657	0.990857401763433
Merged-chr11-3382801-4	chr11	3382687	3382887	+	991.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010718, intron 2 of 15)	intron (NM_010718, intron 2 of 15)	-11383.0	NM_173053	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	5.64384272433835	6.38083297214115	5.59023481142712	4.83696737239768	6.02403219300983	6.30164872558428	5.56167244037694	5.34170371641789	0.194169937391463	0.741562022470176	0.898282277447224
Merged-chr19-42091096-4	chr19	42091006	42091206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145501, intron 1 of 8)	intron (NM_145501, intron 1 of 8)	671.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	7.21364529147952	7.4080568951347	7.17079040603547	7.19472773126749	6.99677082418286	7.16719153633795	6.90202105913499	7.0605077594882	-0.297589675457138	0.113315600906323	0.372182833626604
Merged-chr5-102009884-4	chr5	102009770	102009970	+	974.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172882, exon 3 of 67)	5' UTR (NM_172882, exon 3 of 67)	60051.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	4.7253989576588	4.40521498837467	5.14798572662164	4.95694465508816	5.08430947820507	5.09309887745985	4.96452066687928	5.17391084816251	0.467694272361019	0.179100868270887	0.475236559278787
Merged-chr12-57231193-4	chr12	57231111	57231311	+	918.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164370, intron 1 of 9)	B1_Mm|SINE|Alu	786.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	4.64274586079638	4.67859811263882	4.60225716549713	4.38215858651077	4.86526407762825	5.03707804553492	4.58111216581192	4.92932717897567	0.623076672883392	0.0736064212534998	0.292302580808015
Merged-chr5-117360745-4	chr5	117360630	117360830	+	946.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021539, intron 1 of 8)	intron (NM_021539, intron 1 of 8)	3425.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	5.18370797942056	4.62414094015254	5.08914712280889	5.71960778649598	5.2717470165068	4.88880085671722	4.64144505414326	5.18099273949862	-0.384485798371653	0.336783237008922	0.646671794355953
Merged-chr9-118611316-4	chr9	118611201	118611401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	4592.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.64091368325181	6.25066232414577	6.98053540685678	6.9885870779672	6.62864730322571	6.26639992235037	7.01409599787807	6.72724516221506	-0.096103674034494	0.718931889438543	0.887684154524562
Merged-chr13-43398403-4	chr13	43398336	43398536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023554)	promoter-TSS (NM_023554)	60.0	NM_023554	70078.0	Mm.439927	NM_023554	ENSMUSG00000063200	Nol7	2210008F15Rik|5730556I21Rik|NOP27|RARG-1	nucleolar protein 7	protein-coding	6.81097433390001	6.92437021455535	7.12535929118752	6.35698957389466	7.08607341485863	7.12344627623917	6.84645668562444	6.94206529395745	0.261368759919502	0.268793263975538	0.580394011861325
Merged-chr12-78299356-4	chr12	78299305	78299505	+	978.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172952, intron 1 of 23)	L1_Mur1|LINE|L1	72750.0	NM_145965	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	4.87240391501049	5.55574220367178	5.25737920088902	4.7247434063034	6.00040967998468	6.25924409189067	5.88934564875245	4.91362474908817	1.21173722084768	0.00206835439414442	0.0239972937931224
Merged-chr8-94602635-3	chr8	94602611	94602811	+	994.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028221)	promoter-TSS (NM_028221)	770.0	NM_026274	67610.0	Mm.109074	NM_026274	ENSMUSG00000050079	Rspry1	4930470D19Rik|AI608258	ring finger and SPRY domain containing 1	protein-coding	3.25033677906279	3.29456944821227	3.31063103608608	3.01581960550112	3.47368479650445	3.42465592763893	3.460699820383	3.47329758453852	0.90118219308128	0.0834474255248555	0.313987646108458
Merged-chr9-64737714-4	chr9	64737623	64737823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017382)	promoter-TSS (NM_017382)	33.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	6.51489639286406	6.66225072067324	5.68404487415208	5.91604822379778	6.45667582644273	6.6093033184234	6.58979294154552	6.74504898122271	0.5152861025975	0.0710953268888729	0.285968256816404
Merged-chr2-101782172-1	chr2	101782072	101782272	+	573.0	f0_balb.idr	intron (NM_001355625, intron 1 of 8)	MTD|LTR|ERVL-MaLR	15535.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	3.49034025933956	3.20598095298359	3.69825677466123	3.28432915630569	3.383025507604	3.60804318100287	3.68184787701563	3.69596194092927	0.560101172081721	0.280258399922549	0.592308919118337
Merged-chr17-27820717-4	chr17	27820617	27820817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271511)	promoter-TSS (NM_001271511)	-175.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	7.97115633355344	8.32632291188427	8.06758386931363	7.67795303451862	8.23868146689613	8.54620982586193	8.16499088370728	7.93858806052637	0.272889068849333	0.190949245889659	0.490311892807621
Merged-chr10-4675161-3	chr10	4675062	4675262	+	816.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126357, intron 2 of 7)	intron (NR_126357, intron 2 of 7)	-34996.0	NM_001302531	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	3.38017448854636	3.20632391949061	3.48341053674138	3.64141178666012	2.94427403237771	2.97121073224715	3.197746131139	3.43105480966021	-1.11042630908213	0.0638921431132914	0.268511475152682
Merged-chr6-108331420-3	chr6	108331326	108331526	+	773.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	118330.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	3.63097955632152	3.84314931664523	3.8221554387058	3.54858445154197	3.47670355896643	3.64136045178144	3.39530523354387	3.0613406144047	-0.999485764363909	0.069048088490125	0.280876322473346
Merged-chr8-70376586-6	chr8	70376515	70376715	+	839.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016685, intron 8 of 18)	CpG-14088	3067.0	NM_016685	12845.0	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	4.0154370957174	3.96777692349173	4.40808537291516	3.81405435419646	3.62733775719638	3.8267977448715	3.50683169135611	4.01354167570666	-0.872924147208498	0.0758276996801572	0.297505227402376
Merged-chr11-58904233-4	chr11	58904149	58904349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011758)	promoter-TSS (NM_011758)	-24.0	NM_011758	22698.0	Mm.127646	NM_011758	ENSMUSG00000037001	Zfp39	CTfin33|Zfp-39	zinc finger protein 39	protein-coding	7.64817305118962	7.83481789671364	7.75489776266443	7.61150811232334	7.65327170394207	7.66450506346945	7.7325777840424	7.43279072013817	-0.111952900216015	0.518846905939091	0.779745431679921
Merged-chr4-41529045-3	chr4	41528960	41529160	+	896.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027993, intron 1 of 5)	intron (NM_027993, intron 1 of 5)	11623.0	NR_045726	76992.0	Mm.440546	NR_045726	ENSMUSG00000036162	Fam219aos	1700066J24Rik	family with sequence similarity 219, member A, opposite strand	ncRNA	2.58778916424519	2.60228715526033	2.67206893516983	2.29299022178737	3.61263131418871	3.15193303363354	3.61675620396872	3.20981169512016	4.89427667769673	4.39930698325336e-10	3.01674635607891e-08
Merged-chr8-36238257-4	chr8	36238174	36238374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081150, intron 1 of 11)	intron (NM_001081150, intron 1 of 11)	11242.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	6.27250586181028	6.25618851706022	6.42925813368646	6.41105963887904	6.11386023466997	5.8240124641922	6.38002045458578	5.88490651677802	-0.416223765728438	0.088912478092113	0.325381910896163
Merged-chr8-56550730-4	chr8	56550653	56550853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015791)	promoter-TSS (NM_015791)	-187.0	NM_001009951	382010.0	Mm.425534	NM_001009951	ENSMUSG00000038215	Cep44	4933440G23Rik|mKIAA1712	centrosomal protein 44	protein-coding	4.99576103518582	5.08036323885145	5.5634671556051	5.18041892888506	5.33109913264967	5.31419473637594	4.97277497433275	5.51058393119537	0.142676355155363	0.655083343776822	0.85589268023808
Merged-chr18-30272809-4	chr18	30272708	30272908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181414)	promoter-TSS (NM_181414)	-57.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	8.17972963324516	8.24616961477446	8.13189563306093	8.57636713145508	7.97076423444024	8.08347415077632	8.39214255920907	7.81492996995622	-0.283115280457592	0.149565358173523	0.431847826928168
Merged-chr14-122830646-2	chr14	122830546	122830746	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 22 of 24)	MTA_Mm|LTR|ERVL-MaLR	-82384.0	NR_155287	105245866.0	Mm.390754	NM_001039531	ENSMUSG00000075463	Gm15735	4930594M22Rik|F930011C10Rik	predicted gene 15735	ncRNA	2.94593177161234	3.02641808349924	2.94624421288125	2.94047600860132	3.28201539937835	3.12172538581774	3.28505058645479	3.29714281563356	1.134795986754	0.0395518298341153	0.200274574643416
Merged-chr8-119437053-4	chr8	119436947	119437147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027950)	promoter-TSS (NM_027950)	-115.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	8.57773034315584	8.62476109289735	8.46210678819815	8.43113584668313	8.67432939701001	8.77054835991529	8.54434304232757	8.50667896210074	0.131821408875326	0.3899000333947	0.690126025603507
Merged-chr2-144452826-3	chr2	144452716	144452916	+	899.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6464.0	NR_033459	668917.0	Mm.152805	NR_033459	ENSMUSG00000083674	Zfp133-ps	Zfp133	zinc finger protein 133, pseudogene	pseudo	3.72651097066071	3.07249419707842	3.23609381356848	2.86015416444096	3.67865180279728	3.41771717157619	3.75358537504409	3.52907446737452	1.15451922265829	0.0534978107348431	0.241419690373748
Merged-chr7-25848195-4	chr7	25848089	25848289	+	949.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31659.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	4.93919673620397	4.4924365386925	4.24518129668207	4.61505963183159	5.03699585094815	4.90710219688347	4.47053367452617	4.65560395984267	0.414500826533634	0.28441758115128	0.596317458143151
Merged-chr9-88705474-4	chr9	88705401	88705601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359992, intron 2 of 2)	intron (NM_001359992, intron 2 of 2)	14086.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	8.23942492404296	8.79254444170989	8.15427371614931	8.08775976865458	8.50307111761809	8.64213470486916	8.50686339833114	8.41817288329005	0.214119331655665	0.282366324330155	0.594526196518254
Merged-chr1-65185769-4	chr1	65185680	65185880	+	743.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011086)	promoter-TSS (NM_011086)	699.0	NM_001111320	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	3.17912424802759	3.73792222930403	3.7698429977989	3.4502060874709	3.62795169620064	3.7369444267545	3.55020507009403	3.81407114477149	0.413008891100303	0.42405554400431	0.715935710784696
Merged-chr6-5362212-4	chr6	5362111	5362311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21175.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	7.49124903372414	7.19268166615033	7.79535830221115	8.03034089231911	7.27182345961483	7.30801197413056	7.42746216576511	7.20851005538635	-0.491971353780287	0.0288886735491488	0.163334267864834
Merged-chr8-115711343-4	chr8	115711241	115711441	+	910.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4447.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	4.38465215120883	4.33336421793776	4.82770540970897	4.96477684334735	4.71050232646211	4.36209853506546	4.86980692503174	4.71830130172124	0.0178372238636533	0.96420039589743	0.987306728614525
Merged-chr14-31569376-4	chr14	31569301	31569501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009937, intron 1 of 16)	intron (NM_009937, intron 1 of 16)	7982.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	6.44783782322391	6.93168587128421	6.71343555706888	6.10264144091262	6.5379459023483	6.57270392122865	6.34506264097567	6.31701592866697	-0.183519768472407	0.483389052873743	0.757806109710285
Merged-chr13-60488404-3	chr13	60488305	60488505	+	723.600037	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113542.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	2.29922974693174	2.32589689435833	2.29939282721752	2.30307340053991	2.88373825291758	3.01954026626453	2.94388250513089	2.66722069256885	3.17112417524962	7.27273183911853e-05	0.00155129091871926
Merged-chr10-128526054-4	chr10	128525950	128526150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011843)	promoter-TSS (NM_011843)	-191.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	8.87571473028437	8.82351191117153	8.75370768589958	8.64194941689007	8.81341079534225	8.92744230406933	8.73478650553557	8.82913705260461	0.068226137282342	0.641694873459211	0.848854850593973
Merged-chr2-13574083-9	chr2	13574024	13574224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011701)	promoter-TSS (NM_011701)	-187.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	5.93914944602205	5.93769991829606	5.8486933696576	5.76602277841933	5.81855127620433	6.00026179845037	6.14872680333374	5.74599985752713	0.105722393180275	0.673229909591871	0.865685375148687
Merged-chr16-38346969-4	chr16	38346879	38347079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001017429)	promoter-TSS (NM_001017429)	-20.0	NM_001017429	12856.0	Mm.27396	NM_001017429	ENSMUSG00000046516	Cox17	AI037035	cytochrome c oxidase assembly protein 17	protein-coding	7.69520936870283	7.85461625873151	7.64508592795355	7.82061978405391	8.21858916941615	7.9789852753737	8.04110211624652	7.87914738907829	0.363019950262627	0.0332394979795821	0.179130392692965
Merged-chr12-45092585-4	chr12	45092474	45092674	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18091.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	5.49835319176308	5.52494766884742	5.84426473386624	6.18387130947755	5.32720585343505	5.52729540832096	5.67864928265913	4.89525512734091	-0.716137074274899	0.032360516056716	0.176147976745883
Merged-chr15-59787303-3	chr15	59787187	59787387	+	778.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7672.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	2.99778976570889	2.72844781047479	2.81593018876456	2.60516568675812	2.86146396788659	2.92441972252565	2.86911878836321	3.05184444911827	0.649939843485203	0.295061080939152	0.607132847913763
Merged-chr1-156024639-2	chr1	156024560	156024760	+	861.0	f0_balb.idr|f1_balb.idr	intron (NM_144791, intron 4 of 6)	intron (NM_144791, intron 4 of 6)	10157.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	3.59442672087226	3.65391960905466	3.43528091613627	4.18453811735657	3.07676155597073	3.07842447816254	3.03548771201002	3.37559023413713	-2.27423086587927	0.000281550037703367	0.00481625814315981
Merged-chr8-27086718-3	chr8	27086657	27086857	+	679.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054044, intron 1 of 18)	intron (NM_054044, intron 1 of 18)	916.0	NM_054044	78560.0	Mm.87046	NM_054044	ENSMUSG00000031486	Adgra2	8430414O08Rik|9530074E10Rik|Gpr124|Tem5|mKIAA1531	adhesion G protein-coupled receptor A2	protein-coding	2.61173230308435	2.523422542444	2.61206674352235	2.44121904570437	2.39011356867101	2.44033456941234	2.54007522067033	2.6709043579765	-0.169705609190726	0.80521760669572	0.925171083261684
Merged-chr7-119720291-1	chr7	119720191	119720391	+	848.0	f0_balb.idr	intron (NM_145585, intron 2 of 4)	CpG	3328.0	NM_145585	233802.0	Mm.26392	NM_145585	ENSMUSG00000030942	Thumpd1	6330575P11Rik	THUMP domain containing 1	protein-coding	3.81720262727068	3.9542878734491	4.32815760915162	4.30100924907414	4.0597537280708	3.93824566961319	3.96178627837687	4.1184973913784	-0.276216193993507	0.529836491857371	0.785996306897363
Merged-chr10-95682545-4	chr10	95682440	95682640	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118394.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	4.31248770787027	4.53040221036136	4.02254385476487	4.51004132785927	4.2624722307366	4.39602959421934	4.29386088419915	4.02032110257972	-0.293482324290832	0.475404545109976	0.752257966707045
Merged-chr8-111538370-4	chr8	111538267	111538467	+	981.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168623)	promoter-TSS (NM_001168623)	24.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	5.22925259044604	5.74108243216157	4.97683295114369	4.85812760189049	5.73536606715315	5.64335744257554	5.570253177438	5.19325803532598	0.548212014126506	0.113717269039966	0.372939619102274
Merged-chr11-106819124-3	chr11	106819028	106819228	+	687.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025481)	TTS (NM_025481)	29876.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	3.51175372166267	3.71082549597779	3.29746572502086	3.17442785475989	3.32096067720801	3.15080827300038	3.09968841312599	3.29573847008915	-0.767178505118878	0.17952545159274	0.475749514329241
Merged-chr19-37178029-4	chr19	37177894	37178094	+	907.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045329, intron 2 of 2)	intron (NR_045329, intron 2 of 2)	-1931.0	NM_001290826	208922.0	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	3.491593405862	3.46908884934725	3.89275654073485	3.22019441368471	3.66861326872745	3.48524223461697	3.8745104327792	3.60244394297801	0.43050834594061	0.412445745061996	0.707579906585652
Merged-chr5-123586010-4	chr5	123585877	123586077	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001359223)	TTS (NM_001359223)	-12962.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	4.3757455508887	4.26177319820998	4.4933543479211	4.13466253771683	4.28749396426772	4.00883179924871	3.983550285137	4.52695937886172	-0.215131672011194	0.609078359913483	0.83089280248568
Merged-chr9-111577651-4	chr9	111577544	111577744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016853, intron 8 of 10)	intron (NM_016853, intron 8 of 10)	112704.0	NM_016853	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	5.31434279310198	5.53475658684611	5.28445399332526	4.83799490345736	5.6836987331058	5.26089616679061	5.60721317649535	5.24926418806013	0.394545955339375	0.226969277139929	0.535616160342754
Merged-chr15-100040896-4	chr15	100040797	100040997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	2233.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	6.10910199946021	5.68045356792732	6.12997273259581	6.36205656524198	6.20576160351568	5.69050610096142	5.79036885992994	6.14504662753185	-0.184121629732357	0.51463761880618	0.777149563887325
Merged-chr11-54885091-4	chr11	54885011	54885211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17743.0	NM_001329860	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	7.25537433218076	7.05218860235352	7.16017104318206	7.37549070779787	6.75022268529298	6.96426297160996	7.06743228983719	6.86855995528275	-0.43090272649336	0.029562213303834	0.165607491008469
Merged-chr11-34012180-4	chr11	34012064	34012264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-18971.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	6.882139000685	7.18391426413695	7.22121132483162	6.87390621019116	7.00730043619364	7.11450211402319	6.99168165279835	7.10572223047282	0.015560084229452	0.937466546385749	0.977342790666601
Merged-chr9-40268060-3	chr9	40267970	40268170	+	691.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1146.0	NM_001083917	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	2.99002693281342	3.25714174033287	3.26194583976128	3.15190505769201	3.5863272354028	3.49519364351319	3.36636677901477	3.72048885668283	1.32972984134641	0.012030056869019	0.0901165457671969
Merged-chr1-131091029-4	chr1	131090915	131091115	+	885.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	6828.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	3.91314612084172	4.02050322323066	3.81514231898339	3.59712832901502	3.54751676056215	3.93641257259122	3.69385755921902	4.00270996839642	-0.104776460488611	0.826972626725317	0.93362334408199
Merged-chr10-22358187-3	chr10	22358084	22358284	+	696.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-3710.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	3.45339192526224	3.07968713988292	3.24735699858451	3.12844084720297	3.09472227883286	3.36053037313754	2.99190047073034	3.06571878940239	-0.371085606790062	0.518323470469908	0.779459059723581
Merged-chr15-4026119-2	chr15	4026019	4026219	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024188)	promoter-TSS (NM_024188)	-309.0	NM_024188	67041.0	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	3.839352309082	4.16808940861554	3.55894333925269	4.11170761415579	3.75508907391199	3.6756618518671	3.77315310799741	3.93483757242344	-0.470346095620779	0.327412320855638	0.638962563709689
Merged-chr19-5849317-4	chr19	5849222	5849422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3842.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	6.06677411099972	5.58020455009254	6.16127284228425	5.71719342432187	5.90225502001614	5.69503498238232	5.39645133549195	5.91978548078759	-0.228553093958707	0.431094869333228	0.721473790608606
Merged-chr19-17163647-4	chr19	17163533	17163733	+	972.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	175872.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	5.05908750708004	4.97015629694141	4.88819813394368	5.01008805687768	4.54542313078692	5.02589897892539	5.21287437637973	4.92114744180146	-0.0941118930833555	0.782484353596003	0.91529005173258
Merged-chr15-7878242-4	chr15	7878139	7878339	+	893.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081402, intron 17 of 17)	intron (NM_001081402, intron 17 of 17)	62689.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	4.65329528499364	4.14369980812393	5.08342930527938	5.0635671648403	4.22741227298243	4.24645929886002	4.20516134611393	4.05879811900972	-1.39787573888076	0.00146678884549867	0.0183294528149139
Merged-chr10-80494800-2	chr10	80494700	80494900	+	736.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139226)	promoter-TSS (NM_139226)	-106.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	3.02951247379354	3.14063262991138	3.02985786007536	3.12027313681159	3.06022132394267	3.13893478116035	3.13977168177906	3.36275937968846	0.362195579885715	0.515421818984694	0.777533445789008
Merged-chr17-83350809-4	chr17	83350705	83350905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286567)	promoter-TSS (NM_001286567)	-126.0	NM_001114361	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	7.62027853161357	8.1044684149746	7.14858655588308	7.69264120197844	7.99340965878371	7.69907818027475	7.97784364110728	7.58980254668822	0.182607433227146	0.430019844371233	0.720740306563559
Merged-chr4-19898206-4	chr4	19898115	19898315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	24351.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	6.36325509589662	6.12602166300574	6.01033017600733	6.59229783027281	6.12526220745078	6.0447665413772	6.26164195456487	6.09369067198509	-0.269339020484076	0.284184243776813	0.596149547251475
Merged-chr3-136235722-4	chr3	136235585	136235785	+	863.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 5 of 16)	Lx8b|LINE|L1	90381.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	3.64210390890931	3.14261619187889	3.78352231920049	3.4312140096256	3.31074714468256	3.65690897435298	3.52477743261551	3.48228650042006	-0.066020566629289	0.902659028976663	0.963851890542003
Merged-chr1-159187025-4	chr1	159186928	159187128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45172.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	7.86646382149152	7.73226862659986	8.21141137213738	7.95456220025662	7.39933608986575	7.42569051166037	7.7558089777716	7.49756608126801	-0.558371464743136	0.0033633961890187	0.0349289724741993
Merged-chr11-51263044-4	chr11	51262928	51263128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007714)	promoter-TSS (NM_007714)	29.0	NM_001358282	193286.0	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	7.94883029124014	7.96278008033656	7.43098023520691	7.82809995297026	8.01727884438987	8.3089316708881	7.93941826023821	7.99262570758026	0.333780929032813	0.0811569295232737	0.309177322122516
Merged-chr2-109932358-3	chr2	109932244	109932444	+	816.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172671, intron 1 of 17)	intron (NM_172671, intron 1 of 17)	14697.0	NM_172671	107515.0	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	3.4058449456142	3.40267285487253	3.1822842943451	3.34439887859101	2.96037727989246	3.29418990805646	2.97655410369852	3.40433077172781	-0.642174187787926	0.265926346544841	0.577640399629194
Merged-chr17-6795224-3	chr17	6795178	6795378	+	926.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-12498.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	4.06904207487309	3.86092118928907	3.53404055729857	3.81892561237738	3.92344684679175	3.89533557838948	4.05131686845589	4.15175624982383	0.482481018024366	0.283264418578121	0.595360804251864
Merged-chr19-43512251-4	chr19	43512147	43512347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 2 of 8)	B3|SINE|B2	12358.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	8.00013335049701	7.98201323668508	8.22447879068846	8.07654675777978	8.74361319834959	8.82219444082789	8.66289471428321	8.45874174832196	0.76701639909521	2.28113246883866e-06	7.35698812865732e-05
Merged-chr5-105700631-4	chr5	105700521	105700721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178701)	promoter-TSS (NM_178701)	-189.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	7.66989276866265	7.17725766800518	7.31108248225317	7.38640767473384	7.35281662129355	7.22251475088666	7.33552400994322	7.23078308300837	-0.143076401340301	0.455610793026435	0.739054394131757
Merged-chr12-81971976-4	chr12	81971873	81972073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 20 of 35)	intron (NM_018814, intron 20 of 35)	111943.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	7.13482703119673	6.99571309784587	7.1015721059907	7.39450336420243	6.91679468977697	6.96266634722855	6.98178359817855	6.96136352994136	-0.308790709930143	0.117317615765503	0.378812854861766
Merged-chr19-3999391-3	chr19	3999274	3999474	+	804.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011533, exon 8 of 8)	3' UTR (NM_011533, exon 8 of 8)	-1206.0	NM_025529	66387.0	Mm.259222	NM_025529	ENSMUSG00000110949	Nudt8	2310039H17Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 8	protein-coding	3.10712122511826	2.78683387130691	3.05488157706677	2.9768532789547	2.60068313279509	2.85947838564252	2.74422258735355	2.75147900344892	-1.18089749825359	0.0693262987920312	0.281553394067301
Merged-chr14-118691094-4	chr14	118690978	118691178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 1 of 29)	intron (NM_001163676, intron 1 of 29)	-14147.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	6.30808270809545	5.82581634025968	6.21627298541728	6.75090590760237	6.13196247925521	5.96354829229271	5.99869466421401	6.3572576172882	-0.322157480175605	0.259381395367634	0.571231383736746
Merged-chr3-27449609-4	chr3	27449494	27449694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 23 of 26)	intron (NM_001356953, intron 23 of 26)	78243.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	6.47302355527884	6.67464922225442	6.82620952970315	7.23748594372732	6.10592829269864	5.86361520200668	6.40671017923915	6.16495141912626	-1.02628949137421	0.000102407874145384	0.00207023290934231
Merged-chr7-114292711-4	chr7	114292600	114292800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16584.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	6.30207997950145	6.14350035198428	7.05607733123851	6.34355694759769	6.34190988197478	6.5917240976194	6.60851427995037	6.60767481192486	0.0478599796641967	0.859170132061353	0.946640519333691
Merged-chr7-31155987-4	chr7	31155898	31156098	+	959.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4827.0	NR_153431	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	4.17384165153832	4.5197554959045	4.56197640162072	4.22628696900594	4.41309557244548	4.35102271645534	4.61164946392811	4.12090417871719	0.0317503814249557	0.936506435095549	0.976997926741797
Merged-chr7-19343639-4	chr7	19343535	19343735	+	893.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1436.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	4.54013953598386	4.44851250604447	4.23117891565215	4.72271519944627	4.5034065574281	4.7112420391521	4.11081937726806	4.45688847461548	-0.111503634884114	0.780440588475746	0.914508092485582
Merged-chr12-24595516-3	chr12	24595417	24595617	+	715.650024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145890, intron 6 of 13)	MTC|LTR|ERVL-MaLR	14798.0	NM_145890	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	3.29405094642786	3.76610534897326	3.2944566662267	3.43640725651784	3.17579672786722	3.63525053159448	3.34162683481442	3.23038472854891	-0.386545678755717	0.486109702487384	0.759864467233313
Merged-chr12-85389265-4	chr12	85389152	85389352	+	972.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14535.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	5.17960637536078	5.63721588244146	5.39593245463041	5.2996130860605	5.3675962553019	5.42090626485377	4.89871419771562	5.44747542933956	-0.151394491906571	0.62624814432673	0.840365733236005
Merged-chr4-9610207-4	chr4	9610114	9610314	+	829.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 4 of 22)	intron (NM_001290367, intron 4 of 22)	33503.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	4.20393889845499	4.579590934724	3.86226908883881	4.25847485679945	4.71515719191653	4.64876318695095	4.53449919456745	4.59086769506975	0.84169137271217	0.0356566378223125	0.187514135467631
Merged-chr11-4094563-4	chr11	4094461	4094661	+	921.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026443, intron 1 of 3)	intron (NM_026443, intron 1 of 3)	870.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	4.3590037965893	4.33364503582484	4.35966577983821	4.45849179738314	4.490781258432	4.3943659072536	4.58068633202352	4.56214582549994	0.28391025606791	0.433754148345849	0.723256357491443
Merged-chr6-58735286-4	chr6	58735188	58735388	+	944.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96177.0	NM_001361967	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	5.12864951083477	4.89385796303421	5.21839798231291	5.41024765100276	4.42052482999333	5.032541565238	4.97593320452731	4.64810302552094	-0.802097032788567	0.0254118464929573	0.15019428892487
Merged-chr7-16259274-4	chr7	16259127	16259327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007577, exon 2 of 3)	5' UTR (NM_007577, exon 2 of 3)	111.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	6.68755503647458	7.22857141764492	7.01102948311983	6.33067692376163	6.36045275442752	6.75827285116451	6.34010299901331	6.04851223022289	-0.653260106320678	0.0205741632281111	0.130504013728808
Merged-chr3-30593916-4	chr3	30593808	30594008	+	980.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	5962.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	4.79937794690114	5.2137636016605	4.71700079020859	4.69384419210608	5.18635070926595	5.41016703251087	5.09438221593407	4.94874109966711	0.581556279630899	0.083829593831793	0.314833315039114
Merged-chr13-94382241-4	chr13	94382149	94382349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009680, intron 1 of 26)	intron (NM_009680, intron 1 of 26)	23289.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	6.6558683194661	6.6230308595249	7.10149492842572	7.16793504491573	6.85064302834146	6.45536161101259	6.93891811099962	6.48489056506754	-0.30131987307876	0.218861367576034	0.526206157159078
Merged-chr11-97394349-3	chr11	97394258	97394458	+	905.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_138657, exon 10 of 10)	3' UTR (NM_138657, exon 10 of 10)	31807.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	3.82881176918011	3.91417244146989	3.87687389862992	3.79412394803161	3.64454769856167	3.67654410125468	3.76439029007226	3.61737259013095	-0.532763019879658	0.241705854841812	0.5522338792996
Merged-chr11-121848076-4	chr11	121847948	121848148	+	955.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17830.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	4.18432447837568	4.20728390166591	4.43205069204441	4.49471571116769	4.77526794744492	4.73440376530296	5.00668530726455	4.71133924946443	1.00229741747185	0.00647299424122272	0.0573921598425714
Merged-chr12-110436914-4	chr12	110436817	110437017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10262.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	6.02752426676468	6.36492311703389	6.24945899704064	6.29817622073775	6.02395074912082	5.91277528510469	6.12237127619144	6.04602970711126	-0.33707367743429	0.148836514568117	0.430746567150915
Merged-chr18-80392197-3	chr18	80392135	80392335	+	864.3110960000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27981.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	4.23164302624875	4.01192150423303	3.82790269950997	3.96916069442766	3.67193567471784	3.65072517195984	4.05002058881928	3.87748182736172	-0.552063793506943	0.228468718660692	0.53732611681974
Merged-chr15-36708599-4	chr15	36708497	36708697	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	82335.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	5.08209251064376	5.21702925894122	5.01548609788359	5.08808458265044	4.68648882247474	5.11942406363344	5.18209036924812	5.11187499292559	-0.147812307349598	0.646145547946147	0.851230685864498
Merged-chr6-38975037-4	chr6	38974929	38975129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	56043.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	6.76853353141684	6.98632879144869	7.36316986831561	7.16968078624334	6.65079868019425	6.72087827421625	6.82118913744519	7.15764030294995	-0.339687343151317	0.135945931239947	0.410349387415563
Merged-chr10-60350584-4	chr10	60350418	60350618	+	926.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	3667.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	4.10129571687813	4.27282565684811	4.34050910047899	4.27860187333585	4.74407514872922	4.63472083777672	4.08506385541011	4.24764009032806	0.497716383693811	0.225522636811272	0.533978968983751
Merged-chr7-16885362-7	chr7	16885226	16885426	+	979.404785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081655, exon 4 of 4)	exon (NM_001081655, exon 4 of 4)	-6460.0	NM_010320	14709.0	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	4.45433013756394	3.88069627334728	3.91713634053602	4.03490132557493	4.52220832946368	4.31758889146709	4.68482157331017	4.73737786909029	1.15811312040043	0.00479369050110157	0.0460590374165349
Merged-chr4-58553309-4	chr4	58553219	58553419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172989)	promoter-TSS (NM_172989)	-26.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	6.34414387413015	6.30366845979099	6.39763980501781	6.34565725178399	6.37088531980227	6.26608741916453	6.27683121319888	6.06280343012096	-0.137914824791529	0.532863597372455	0.788341744208804
Merged-chr7-16286347-4	chr7	16286240	16286440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136471, intron 1 of 13)	CpG	455.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	8.81149345811907	9.09317441638485	8.73827085043457	8.69968686621267	8.89531718642233	9.01463132278376	8.93152393477619	8.76642807889445	0.0756516445274408	0.638373091041198	0.847153284197798
Merged-chr9-83441163-4	chr9	83441054	83441254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027448)	promoter-TSS (NM_027448)	-27.0	NM_029434	75782.0	Mm.199698	NM_027448	ENSMUSG00000032258	Lca5	4930431B11Rik|5730406O13Rik|AV274874|ORF64	Leber congenital amaurosis 5 (human)	protein-coding	8.0566409342177	8.02509168202012	8.06449409574053	8.47892374647506	7.95583765435418	8.01431910678339	8.11981673316631	7.87734008087804	-0.240741369492003	0.188279174191969	0.486850123144918
Merged-chr12-84706701-1	chr12	84706601	84706801	+	547.0	f0_balb.idr	Intergenic	Intergenic	-7894.0	NM_001033334	627191.0	Mm.152484	NM_001033334	ENSMUSG00000071234	Syndig1l	DSPC1|Gm261|SynDIG2|Tmem90a	synapse differentiation inducing 1 like	protein-coding	3.31325214635011	3.14323236487399	3.14380327763599	3.11580430092434	3.34435909353202	3.05609710524048	3.30028350833512	3.14226061088608	0.17359098441814	0.752044418704765	0.902329068825205
Merged-chr10-24641931-4	chr10	24641841	24642041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008813, exon 25 of 25)	exon (NM_008813, exon 25 of 25)	46499.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	6.03619154717058	5.41911536829475	6.59376254058403	6.6725557053491	6.13819101365669	5.13779672890069	6.58735429768753	6.19661775099389	-0.24070375740104	0.708792710265466	0.88307290901394
Merged-chr4-32163025-1	chr4	32162925	32163125	+	862.0	f0_balb.idr	Intergenic	Intergenic	198918.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	3.3736254624064	3.67788667877364	3.31530449981768	3.56954547950868	3.44879794820652	3.15916312646165	3.30370521639647	3.53368720992512	-0.429926870267195	0.42327044283147	0.715213125702152
Merged-chr2-124599182-4	chr2	124599083	124599283	+	924.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-11113.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.45137725155268	4.6185589704621	4.45206440813754	4.61261493999492	4.75847441570453	4.53732245187307	5.13053417365008	4.25654653573782	0.371897652453046	0.343458111206902	0.652163605015101
Merged-chr16-55747371-4	chr16	55747280	55747480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74758.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	7.29632986587731	7.35959964225428	7.45654594572293	7.37749478337145	7.45775715878641	7.59487992562297	7.17418951850878	7.1936605781714	-0.00666225652291213	0.971845658519018	0.989768551725772
Merged-chr1-164652441-4	chr1	164652339	164652539	+	836.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-144224.0	NM_019759	56429.0	Mm.28935	NM_019759	ENSMUSG00000026574	Dpt	1810032B19Rik|5033416F05Rik|EQ-1|Eq1	dermatopontin	protein-coding	4.14003013150128	3.71630366207082	4.54915098851432	4.26685646458562	4.66118377308667	4.42212088517079	5.05395776257872	4.46585687615223	1.07581538804344	0.0157224261958512	0.108388028948436
Merged-chr9-56272473-4	chr9	56272373	56272573	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 3 of 6)	intron (NM_172924, intron 3 of 6)	-111403.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	5.5748429210684	5.79031659625289	5.40965953321726	5.34254632515067	5.73029225945389	5.74928813047333	5.12326113575299	5.18031664095256	-0.0849703281312477	0.789590876451665	0.918518157072516
Merged-chr6-16842693-3	chr6	16842592	16842792	+	924.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 4 of 6)	intron (NM_031198, intron 4 of 6)	55749.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	3.92425471323866	3.51337026199285	3.48983078742351	3.9069951003419	3.58357648325482	3.27695531737406	3.47688514774695	3.48802075673115	-0.85403588662686	0.104489124444932	0.355483767750016
Merged-chr19-46478950-4	chr19	46478847	46479047	+	971.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 10 of 11)	intron (NM_001025391, intron 10 of 11)	-22701.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	5.78596342010755	5.79214939266162	5.67010773025561	5.99788097696436	5.36080682402145	5.60423361011734	5.14057036451142	4.88067685214155	-0.951298829158696	0.00166119932397386	0.0202366090503397
Merged-chr5-100917562-3	chr5	100917473	100917673	+	818.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71344.0	NM_172715	231510.0	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	3.44845748193547	3.53443869595037	3.27818325143147	3.21558033455103	3.32768127442045	3.32797719447053	3.58362637187569	3.27656061878486	0.0529164362922184	0.920151983988034	0.970409558278764
Merged-chr2-92375371-4	chr2	92375260	92375460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145122, exon 1 of 11)	5' UTR (NM_145122, exon 1 of 11)	121.0	NM_145122	18633.0	Mm.202782	NM_145122	ENSMUSG00000027222	Pex16	-	peroxisomal biogenesis factor 16	protein-coding	8.6237275652769	8.87397616867763	8.86642254118868	8.7884872619796	8.62564873389618	8.72223833788901	8.79209031516237	8.53410504446561	-0.152081666729326	0.317587123578867	0.629525367799507
Merged-chr11-75571409-4	chr11	75571324	75571524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 12 of 13)	intron (NM_001199284, intron 12 of 13)	-16655.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	8.02081369321421	7.76335944999867	7.82571524492938	7.81981665634766	7.78305869802604	7.96445522518904	7.95107279814188	7.78185297501377	0.0156299982950157	0.925201902008682	0.97241738811813
Merged-chr14-76702273-4	chr14	76702194	76702394	+	763.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24726.0	NR_015485	73272.0	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	3.34607408012875	3.74847447826407	3.47938261316918	3.71197121524013	3.93423538192874	3.93475370670756	3.69664460578334	4.07633812216469	0.947074296381629	0.0530637839225722	0.240238333279784
Merged-chr4-46087132-4	chr4	46087063	46087263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021883, intron 4 of 9)	intron (NM_021883, intron 4 of 9)	47941.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	5.56098164833929	5.23158327769238	5.38501116205764	5.29299954994727	4.99856544063212	4.76605896851715	5.21523204349133	5.07553006306103	-0.637293150956281	0.0399789639045239	0.201719903009861
Merged-chr8-105607960-4	chr8	105607861	105608061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081241, intron 1 of 21)	intron (NM_001081241, intron 1 of 21)	2732.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	5.14500373555538	5.17033771560686	4.97907658935563	4.85799522875859	4.90625970930698	4.96560879587743	5.08911582923293	5.37005437438127	0.109002086956516	0.735812726166726	0.895714951678205
Merged-chr11-57518584-4	chr11	57518461	57518661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168668)	promoter-TSS (NM_001168668)	83.0	NM_001168667	67726.0	Mm.25632	NM_026342	ENSMUSG00000020523	Fam114a2	1810073G14Rik|9030624B09Rik	family with sequence similarity 114, member A2	protein-coding	5.79762593677973	5.78647929630879	5.35289143020782	5.56908661117269	5.55173819209693	5.39831355869617	5.38736338512237	5.65502227093597	-0.224168776225923	0.423044657008961	0.714964864073543
Merged-chr14-121589617-3	chr14	121589536	121589736	+	871.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081039, intron 38 of 53)	intron (NM_001081039, intron 38 of 53)	-84382.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	3.44519620054569	3.39236082498266	3.28991907811317	3.42778016852579	3.29022486905242	3.08720034011225	2.90022100080241	3.04616308819174	-1.13335039275672	0.0536552248827051	0.241777780687879
Merged-chr6-121224084-4	chr6	121223988	121224188	+	939.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017379, intron 4 of 4)	intron (NM_017379, intron 4 of 4)	13354.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	5.04434741907659	4.55338566844183	5.07694347263077	4.80430894152825	5.11924126421715	5.01074803959584	5.08258355514595	4.71395167648905	0.237266491719331	0.487237825621246	0.760600900973846
Merged-chr10-80590407-4	chr10	80590304	80590504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145421)	promoter-TSS (NM_145421)	-63.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	8.46830080417049	8.61953333262903	7.84732095277157	8.00921276486673	8.53026685460402	8.53478729891923	8.47832644005625	8.13534641854164	0.199310700143876	0.354402956041338	0.661094606846962
Merged-chr10-62980250-4	chr10	62980161	62980361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027425)	promoter-TSS (NM_027425)	38.0	NM_027425	70432.0	Mm.234587	NM_027425	ENSMUSG00000020070	Rufy2	2610111M19Rik|AI844453|Denn|LZ-FYVE|ZFYVE13	RUN and FYVE domain-containing 2	protein-coding	6.48571107435466	7.07483458519488	6.62412331255497	6.77815068862658	6.9164876527433	7.00976550608994	6.85237331514304	6.92135425888656	0.222617450616758	0.301636036116649	0.613766084867412
Merged-chr10-20916607-4	chr10	20916507	20916707	+	836.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35940.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	4.35788553281538	4.51046039573346	4.09533203937016	3.96633119491144	4.09658818833013	3.94826243835936	4.07786741430666	4.27402328113424	-0.346754456896243	0.422622411589627	0.714839748072846
Merged-chr17-56005888-4	chr17	56005790	56005990	+	778.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102313)	promoter-TSS (NR_102313)	-284.0	NR_102313	106766.0	Mm.204991	NM_145934	ENSMUSG00000038781	Stap2	AW049765|STAP-2	signal transducing adaptor family member 2	protein-coding	4.35180063044011	4.53643252811756	4.30510806052843	4.57219622408047	4.50604857493852	4.88353765921199	4.2380387071471	4.67614575115931	0.301493077110716	0.435206868155156	0.724486404144625
Merged-chr5-64241136-3	chr5	64241022	64241222	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	10765.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	6.50137918362674	6.41971486158442	6.58110806230585	6.93317426444012	6.18819544536739	6.11977731544083	6.27776774672954	6.22767099881848	-0.648344139076125	0.0060902513822136	0.0548801118033399
Merged-chr11-46848444-6	chr11	46848397	46848597	+	832.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37698.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	3.37996150590193	3.35324904389753	3.3237982502675	3.24339351784895	3.45752279606374	3.31393766510525	3.56879805236454	3.20111801573293	0.267386635315787	0.607404171058161	0.829999364685165
Merged-chr3-153250797-4	chr3	153250693	153250893	+	997.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	47856.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	5.09384741436504	5.57091412106773	5.3765840005942	5.56516373162556	5.79337167758441	5.83459356161243	6.10771441570829	5.6303324554538	0.702832020941261	0.0142430363678825	0.101124257242238
Merged-chr1-171851719-4	chr1	171851624	171851824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	12027.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	6.2873547265149	6.19589888424273	5.91008660297314	6.08479796287121	5.89065332650156	6.44511673578556	6.32646323926765	6.35452104717682	0.204686970372322	0.415782061881152	0.709915356520787
Merged-chr6-29217857-4	chr6	29217770	29217970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1506.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	6.01630620234523	5.77153841388631	6.28086600492942	6.01958230388093	5.82963598219891	5.71889316384322	5.85494041836685	5.9704763245377	-0.291749175711859	0.250688750686723	0.561920156987255
Merged-chr8-70646580-2	chr8	70646480	70646680	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023217, exon 5 of 5)	3' UTR (NM_023217, exon 5 of 5)	13158.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	3.81767559415368	3.67584691791993	3.81820741222666	3.42995803061592	4.35066226892648	4.15273808598635	4.2267139821507	4.39640957626878	1.69116975962669	9.3454313153929e-05	0.0019175510394879
Merged-chr5-96794446-4	chr5	96794342	96794542	+	902.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013470, intron 1 of 12)	intron (NM_013470, intron 1 of 12)	1057.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	4.51326967360334	4.80626998530451	5.17677844774303	5.03956610001587	4.56978517245702	4.29721971703519	4.44965514154999	4.22068323641802	-1.11501257733174	0.00424894311666612	0.0420486586956578
Merged-chr4-141538854-4	chr4	141538751	141538951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019763)	promoter-TSS (NM_019763)	-254.0	NM_019763	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	8.2093795472526	8.7202505325142	8.4459738814722	8.26205062561696	8.56564813441649	8.54472529949907	8.70848899397597	8.33954692777519	0.154841182238881	0.392831273783086	0.692163706131799
Merged-chr12-34041155-4	chr12	34041064	34041264	+	988.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	83493.0	NM_011658	22160.0	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding	5.99558174332039	5.06806528522463	6.67031594922109	6.17574013764133	5.31660979201798	5.59528978559026	5.5078644850688	5.4100126001741	-1.03860421564897	0.00508065703569218	0.0480835111213314
Merged-chr8-13676589-4	chr8	13676472	13676672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	1015.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	6.74118104358124	6.53253052409116	6.72753715752829	6.75615264029552	6.84670424781117	6.85890177062223	7.06341185852919	6.99023712661115	0.34530200628847	0.0821057095922356	0.311105775548531
Merged-chr7-128633372-4	chr7	128633270	128633470	+	967.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178641, intron 1 of 19)	intron (NM_178641, intron 1 of 19)	22005.0	NM_178641	101490.0	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	4.54060315432725	4.73338871928776	4.2957930171806	4.61017573718577	5.37460455683632	4.76284074284584	4.76310761127189	5.01905271535051	0.934684073826953	0.0112862041008947	0.0860107839076643
Merged-chr2-32078717-4	chr2	32078634	32078834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151493, intron 2 of 5)	intron (NR_151493, intron 2 of 5)	4971.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	7.02568088103946	7.16149023448644	6.95323184198896	6.691444579931	6.98539050819803	6.81627914307867	6.9305692114301	6.47867173690721	-0.191590419035103	0.393926226042041	0.693115015658438
Merged-chr5-123713974-4	chr5	123713872	123714072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027494, intron 5 of 13)	intron (NM_027494, intron 5 of 13)	7072.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	7.08786757556098	7.08527456752766	6.67416652208805	6.93937187986519	6.99754054211391	7.27741850059852	6.94304484173574	7.42234800437601	0.291841160823726	0.173547435174671	0.467593382345019
Merged-chr10-115351120-3	chr10	115351012	115351212	+	880.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359472, intron 3 of 6)	ORR1B2|LTR|ERVL-MaLR	11137.0	NM_001359470	67226.0	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	3.2910459273064	2.89029005408355	3.29152760310048	2.50195051581766	3.50639490115955	3.16247832756527	3.22151861036183	3.39610609437338	1.07868412676876	0.117979141365118	0.380000782986911
Merged-chr18-80715504-4	chr18	80715398	80715598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2427.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	5.21246078857559	4.75255927159783	4.94605272225158	5.20860255260642	4.76749283002786	4.39448040567424	4.74589364738136	4.36806469697729	-0.945091485233957	0.0103341236490401	0.080868149070302
Merged-chr15-96638330-4	chr15	96638236	96638436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	intron (NM_001166458, intron 1 of 15)	3626.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	8.35229283984483	8.91648529187792	8.74815527275706	8.53534811643067	8.96874578925751	8.9219848829964	8.82002810824295	8.75507382920631	0.268774752727479	0.122174681877658	0.387344513891134
Merged-chr4-93511033-4	chr4	93510927	93511127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175516.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	6.09042190170835	5.70049009232695	5.70949399631062	6.16196669109723	6.33770964908816	6.13794090196764	6.5738285810976	5.86224566107378	0.482655493401308	0.0829634275450676	0.312910863142771
Merged-chr7-130709649-1	chr7	130709549	130709749	+	594.0	f0_balb.idr	intron (NM_021314, intron 1 of 17)	intron (NM_021314, intron 1 of 17)	17093.0	NM_021314	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	2.86629931435822	2.99707559767001	3.58913971267416	3.32118824732406	3.3606739080374	3.32971207795147	3.66053799814465	3.21459112492461	0.620557576196875	0.32063436451271	0.632430335149585
Merged-chr8-95037499-2	chr8	95037399	95037599	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173036, intron 8 of 11)	L1MC4a|LINE|L1	-17604.0	NM_001042715	330830.0	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	5.4345422515308	5.47926666735823	5.08648151221344	5.00174853311974	5.62281543961662	5.4327662775487	5.70136040193299	5.08305599416553	0.409076892788554	0.19932012490945	0.501162427882642
Merged-chr2-48695589-4	chr2	48695488	48695688	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118521.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	4.78369925192416	5.11906079325374	5.04474327558427	5.45765505208517	5.02437927634816	5.0017848894472	4.95177676268704	5.0413264440201	-0.273872622163787	0.414193312825271	0.709005478658793
Merged-chr1-66816128-4	chr1	66816019	66816219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357156, intron 1 of 14)	MIR|SINE|MIR	1476.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	7.20602570518712	7.42277504651464	7.58043220783712	7.4918576344433	7.67580851232314	7.65778889960658	7.63533679501747	7.55766467788427	0.261296010090543	0.137899463187938	0.413063946022736
Merged-chr5-74252898-3	chr5	74252776	74252976	+	702.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	57550.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	3.25115736892639	3.17457761417273	3.3552388528546	3.48376543010208	2.6411651104277	2.83562655727948	3.06749320896364	3.07697917687676	-1.79236020940635	0.00683647643550243	0.0598614289829779
Merged-chr3-14871614-3	chr3	14871520	14871720	+	934.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007606, exon 7 of 7)	exon (NM_007606, exon 7 of 7)	8082.0	NM_007606	12350.0	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	3.75198006476816	3.65056956752961	4.45861002871037	4.18303281843675	3.33732535663979	3.64442296716625	3.24068794728926	3.52222284575155	-1.91974192802095	0.000614853168620681	0.00911383458751592
Merged-chr4-128980542-4	chr4	128980461	128980661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31A|LTR|ERV1	-12663.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	6.59562915698091	6.68698885929758	6.75715649996019	6.72906156960406	6.63659278653102	6.28845239404111	6.26774020243154	6.40826944038474	-0.398734684837053	0.0667858053971086	0.27556355239469
Merged-chr10-81088564-4	chr10	81088469	81088669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145365, exon 8 of 12)	exon (NM_145365, exon 8 of 12)	10303.0	NM_145365	208677.0	Mm.294693	NM_145365	ENSMUSG00000035041	Creb3l3	BC010786|CREB-H|D10Bur1e	cAMP responsive element binding protein 3-like 3	protein-coding	5.86499347808615	5.47941561293839	5.53865872061572	5.60802942279002	5.58399060202537	5.92438827546517	5.67141579498637	6.06577584668447	0.314120909730179	0.253475451345445	0.564769584652771
Merged-chr11-69052982-4	chr11	69052965	69053165	+	785.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3-int|LTR|ERVL-MaLR	-6710.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	2.9110812388061	2.82551514233164	3.04410589551349	2.66371957546951	3.17474220682332	3.09202411406873	3.4984569490017	3.32519029129608	1.76161108967391	0.00306724509137258	0.0325485382261363
Merged-chr5-121397943-4	chr5	121397892	121398092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172722)	promoter-TSS (NM_172722)	10.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	6.24967461998414	6.56142136448988	5.97209076965487	5.8837364525497	6.57258087007551	6.34805261643022	6.32863867058303	6.40846243495141	0.356596757040211	0.16408384010391	0.454038022239756
Merged-chr17-25844568-4	chr17	25844474	25844674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163766)	TTS (NM_001163766)	277.0	NM_145999	214952.0	Mm.40907	NM_145999	ENSMUSG00000025733	Rhot2	Arht2|Miro2	ras homolog family member T2	protein-coding	6.90891650227447	6.6865851386043	6.29098654434234	6.46381177506111	6.80442585948292	6.65328110592162	6.4086494362936	6.41912851898181	-0.0194551870209722	0.935533683340267	0.976598598634278
Merged-chr5-105151013-4	chr5	105150917	105151117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11431.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	5.64269575504211	6.19444381061092	5.98599795522326	5.34658087021825	6.17762131449842	6.18207296456965	6.13363187691772	5.58243030328559	0.351209228127397	0.258121411400551	0.569965067227543
Merged-chr17-56079291-5	chr17	56079247	56079447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304785)	promoter-TSS (NM_001304785)	-14.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	8.9578644667789	9.1166227303841	9.13819552607515	8.76564136353666	9.10590376447468	9.30999345419382	9.28489896658639	9.11320476916105	0.256054000437136	0.104935775866392	0.356322087128799
Merged-chr8-11118175-3	chr8	11118067	11118267	+	838.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109737.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	4.00682210533336	3.96669192433107	4.26449697506424	4.58741001106005	3.59566086412764	3.53815122223725	3.94206084864977	3.74331113663123	-1.50135909853898	0.00228697553272866	0.0259459087414876
Merged-chr2-132018363-4	chr2	132018252	132018452	+	954.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 1 of 10)	intron (NM_175445, intron 1 of 10)	11636.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	4.8612710369694	4.61198716259385	4.76147160005996	4.60703760950937	4.44162305873817	4.43337697571735	4.70341308542018	4.30154309782661	-0.506319340280611	0.165195163456831	0.455772085768736
Merged-chr2-129311763-4	chr2	129311648	129311848	+	945.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1776.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	5.10896733348869	5.47597931932383	5.04343083027219	4.32142161045902	5.23453055543789	4.95966596552949	5.2911887929754	4.9700146079575	0.150216457808288	0.702821952276185	0.880421119462815
Merged-chr8-39594936-4	chr8	39594845	39595045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 8 of 9)	intron (NM_001113326, intron 8 of 9)	47733.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	6.96072283961023	6.16410772121347	6.94957084442705	7.15416419225042	6.68339982967533	6.87998338910283	6.57501003759924	6.90680177933228	-0.140020828451511	0.594107731390727	0.823300253342041
Merged-chr2-61594129-1	chr2	61594029	61594229	+	1000.0	f0_c57.idr	non-coding (NR_149323, exon 2 of 10)	non-coding (NR_149323, exon 2 of 10)	1032.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	4.86001805232159	4.78313196895933	5.04338032091192	4.51680799379162	5.2479502454667	5.21822437250447	5.29086223981016	5.44388826346439	0.986800199182598	0.00203011740938281	0.0236616549995839
Merged-chr1-155564977-4	chr1	155564867	155565067	+	922.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026683, intron 2 of 3)	intron (NM_026683, intron 2 of 3)	6847.0	NM_028250	72482.0	Mm.288249	NM_026683	ENSMUSG00000033701	Acbd6	0610010G04Rik|2610100E10Rik	acyl-Coenzyme A binding domain containing 6	protein-coding	4.29397056275772	4.67965193235691	4.19833420558216	4.46822426483508	4.62139479407423	4.16431532458029	4.27597297564158	4.58105211044765	0.01124378089912	0.977675153195629	0.991939645680407
Merged-chr11-88989688-3	chr11	88989626	88989826	+	794.988892	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016706, intron 6 of 6)	intron (NM_016706, intron 6 of 6)	-9677.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	3.31798588113695	3.56225075962866	3.50432147977356	2.76827950673323	3.54720961954943	3.68249714619828	3.8821249772847	3.9403773244536	1.44054961967693	0.0156608302578915	0.108078557002759
Merged-chr4-8916408-3	chr4	8916287	8916487	+	827.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	165063.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	3.3830164296771	3.32203963645291	3.25251766741746	3.06391947933005	3.84382816013127	3.93037443529749	3.83327113649755	3.55676738702087	1.84059737952824	0.000238244989148374	0.00419545771464427
Merged-chr13-44419270-4	chr13	44419168	44419368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20459.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	6.01968891066042	6.1261243678456	5.49979987981951	6.05656028821211	5.66530807894824	5.8215165533986	5.94882520331918	5.55576143378718	-0.329856299119771	0.232720638565448	0.542379828180153
Merged-chr7-104447892-4	chr7	104447809	104448009	+	856.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009099, intron 1 of 7)	Lx|LINE|L1	-1784.0	NM_001357467	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	4.27277970490026	4.12445541888962	3.54869740903574	4.1086026523817	4.11355388142372	3.97678643134622	3.89324163536358	4.2305190260021	0.0466102739638743	0.920213395644	0.970412997665404
Merged-chr7-126702530-4	chr7	126702433	126702633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301374, intron 2 of 10)	intron (NM_001301374, intron 2 of 10)	1687.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	5.5554595283877	5.02543979687397	5.1983006818062	5.32972287754512	5.80447981230822	5.19546617272157	5.69707089909146	5.74477509283708	0.605003586778322	0.0474286135048572	0.224357611502351
Merged-chr1-191085748-4	chr1	191085650	191085850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12664.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	6.76311901877938	6.90213841567364	7.12498039391506	6.49572880040795	6.73271487870256	6.85158110276655	6.75827311910835	6.7005012213071	-0.0942852192658944	0.674247025661898	0.866093506924868
Merged-chr5-139375790-4	chr5	139375661	139375861	+	897.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	MTE2a|LTR|ERVL-MaLR	-1936.0	NM_001362206	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	4.01248974377954	3.67013345310891	3.63156647381411	4.0077570654281	3.84925956366742	4.22950973926058	4.12853522043537	4.18668626637867	0.664819358862194	0.145951213426231	0.425834621268474
Merged-chr7-45523000-6	chr7	45522845	45523045	+	949.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008807)	TTS (NM_008807)	3323.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	3.80520187981125	3.14585381792205	3.3050068431249	3.49252485973432	3.69625619850532	3.61140569825885	3.69392803107881	3.97531150009385	0.905875652350194	0.0878978086825827	0.323382339598778
Merged-chr7-99407773-4	chr7	99407667	99407867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362166, intron 3 of 18)	intron (NM_001362166, intron 3 of 18)	26249.0	NM_001362166	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	6.10557134202307	5.92388655151024	5.89317217572992	6.22499734633946	5.69348626873741	5.97298338799703	6.07537730218473	5.7412411808002	-0.291185807338454	0.256348973582465	0.567953987843571
Merged-chr10-9889825-2	chr10	9889725	9889925	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081344, intron 2 of 25)	intron (NM_001081344, intron 2 of 25)	11215.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	2.92520301994755	2.64130641477097	3.12107495605824	2.66115662807817	3.58692596604691	3.35366183666167	3.22343539425356	3.17859100535007	2.08892691067523	0.000876622791132978	0.0121159482815639
Merged-chr5-21187009-4	chr5	21186904	21187104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 1 of 26)	intron (NR_153365, intron 1 of 26)	737.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	5.58521341640684	5.70873669873165	5.75305808899818	5.18908812475285	5.6627962617011	5.5693541275467	5.30647121140246	4.84560139027679	-0.306240995879004	0.365190119457836	0.66989324312268
Merged-chr1-14823562-5	chr1	14823541	14823741	+	968.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67675.0	NM_010827	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	3.19526956453435	3.51432839999005	3.83617794824319	3.48071815019191	3.4860215723378	3.77386609635362	3.43237894211528	3.44333778706132	0.0510523517627494	0.923552338752885	0.971787421578388
Merged-chr2-52425712-3	chr2	52425586	52425786	+	702.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182994)	promoter-TSS (NM_182994)	-812.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	2.59292418079508	2.75534423587087	3.07914477991399	2.4360733451064	2.67655303095431	2.84147627411576	2.78671970927607	2.85706898374169	0.270996334240053	0.692540148809546	0.874986225905201
Merged-chr5-134531843-4	chr5	134531748	134531948	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 2 of 15)	intron (NM_001039162, intron 2 of 15)	20586.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	4.64787627648868	4.80916943534288	4.76738424990619	4.88749428927218	4.72927286215252	4.82351647014959	4.70697612808306	5.00432444946416	0.0536075142724416	0.872447690166683	0.952111996272531
Merged-chr13-113542633-4	chr13	113542574	113542774	+	846.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39830.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	4.2673973865194	4.35935231540754	4.70019436755102	4.60029823380781	3.95933684951845	4.29804710085057	4.53788031961012	4.21788752977156	-0.560950675394259	0.172983776729751	0.466818783888648
Merged-chr11-110464114-4	chr11	110463999	110464199	+	933.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	MTE2a|LTR|ERVL-MaLR	-14416.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	4.22911297823889	4.26241678731586	4.07396679784075	4.09289691412746	4.53961030569426	4.62723528946448	4.98558557626271	4.27523346572522	1.0814451346832	0.00617681212013209	0.0554145840558208
Merged-chr9-99479430-4	chr9	99479351	99479551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028768, exon 22 of 22)	3' UTR (NM_028768, exon 22 of 22)	9030.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	6.29360967038029	5.79222512216973	6.14252179673248	6.59629413509892	6.02115557477508	5.8367652961942	6.22626431836261	6.32551363804426	-0.211767119637872	0.449298272881035	0.734493965811515
Merged-chr11-84555025-4	chr11	84554924	84555124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	29364.0	NR_038057	78365.0	Mm.260345	NR_038057	ENSMUSG00000087211	Lhx1os	1500016L03Rik|Lhx1as	LIM homeobox 1, opposite strand	ncRNA	6.80150488303721	6.86282500480127	6.65342663026991	6.77366114230127	6.86712869893903	7.02044154322265	6.6036725850093	7.00484799313821	0.149239919918016	0.466828998468445	0.746513802802766
Merged-chr1-131566330-4	chr1	131566224	131566424	+	939.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR46B|LTR|ERVK	-32790.0	NM_011924	26361.0	Mm.89986	NM_011924	ENSMUSG00000026432	Avpr1b	AVPR3|V3/V1b|VIBR|VPR3	arginine vasopressin receptor 1B	protein-coding	5.54322010365165	5.908201482467	4.94492627341428	4.7099645351054	5.14373199860552	5.16118153118444	4.76027256471026	4.97918445402231	-0.628351006013328	0.11871838397338	0.38118863696383
Merged-chr12-26438978-3	chr12	26438814	26439014	+	974.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	17538.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	5.24265552256744	5.51404685046473	5.21783274897136	5.45358446722597	3.50698485897279	3.9607881312833	3.80905692135638	3.67171493537953	-4.68258608599029	1.0328177025974e-15	1.8564376579086e-13
Merged-chr15-95799807-4	chr15	95799698	95799898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	8955.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	6.23830152662109	6.54390812236552	6.63747749238239	6.70276612243032	6.47529638724792	6.19740766057631	6.64712270414639	6.44090250103787	-0.145977318146347	0.528548360981196	0.785123414714315
Merged-chr4-129068283-4	chr4	129068191	129068391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	10020.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	7.1549929523455	7.29302171522554	6.75775996353452	6.05353188417754	7.35980540695571	7.47810435409508	6.89203931266377	6.75293350386783	0.363946863246616	0.236107699760688	0.546101444075659
Merged-chr14-57890400-4	chr14	57890287	57890487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360097)	promoter-TSS (NM_001360097)	-51.0	NM_001360097	75965.0	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|HK11	zinc finger, DHHC domain containing 20	protein-coding	8.53344374666532	8.56346327817094	8.38918955868663	8.24245032608876	8.22065899687903	8.67910546901522	8.71593471178079	8.27823463614366	0.069090649172191	0.711270133213335	0.884400328622447
Merged-chr9-35038243-2	chr9	35038143	35038343	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78485.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	3.79291563916666	3.87838604007155	3.7372629748577	3.79207392509721	4.10115632503173	4.07116733515993	3.97935138044177	4.16926406804818	0.771248927446569	0.0667809151256994	0.275559348274328
Merged-chr4-12087190-4	chr4	12087093	12087293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110955, intron 1 of 28)	intron (NR_110955, intron 1 of 28)	764.0	NM_177861	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	5.73776580221777	5.53194854472109	5.22312713647136	5.09715611907786	6.0219021026508	5.59608818259111	5.56060835287829	5.84708932364817	0.63146115092356	0.0376145344412362	0.193843393208279
Merged-chr15-97787859-10	chr15	97787801	97788001	+	985.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026353, intron 1 of 2)	intron (NM_026353, intron 1 of 2)	3536.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	4.62322255781895	4.85642329289037	4.84721977780518	4.27537741003487	4.63283552706733	4.94870301729654	4.7178565010177	4.53710056561468	0.123645726118123	0.744358881970713	0.899277302982049
Merged-chr1-131972710-4	chr1	131972594	131972794	+	971.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145977, intron 1 of 4)	intron (NM_145977, intron 1 of 4)	2085.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	4.82023598950247	4.9432001357836	5.24098189966606	5.64428567847126	4.97154056563351	4.82799010174861	5.12283317702553	5.45547092544425	-0.200638270945856	0.588619988281162	0.819797330030423
Merged-chr16-75983004-3	chr16	75982904	75983104	+	712.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-17780.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	3.58843016898295	3.25543215016472	3.82198959324283	3.40699426710894	3.74912418241819	3.35118210325559	3.3538512807404	3.42350401589007	-0.128870219046847	0.812723107184104	0.927656717651261
Merged-chr18-12760413-4	chr18	12760324	12760524	+	929.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252490, intron 10 of 13)	intron (NM_001252490, intron 10 of 13)	19069.0	NM_027687	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	4.6513542817788	4.38206597964833	4.69059206488323	4.80660965416091	4.49927053755949	4.47493282949996	4.77634100737592	4.98590632712284	0.103003098604986	0.782500602566915	0.91529005173258
Merged-chr12-84202800-4	chr12	84202700	84202900	+	879.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	Tigger16a|DNA|TcMar-Tigger	-8785.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	4.32411095607628	4.35167811456196	4.04481074095815	4.4672563671266	4.09131226141194	4.22038342867815	4.12748812422678	4.32204854929049	-0.321603927712641	0.425290823768694	0.716814083138734
Merged-chr5-114130822-4	chr5	114130727	114130927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011677)	promoter-TSS (NM_011677)	-329.0	NM_011677	22256.0	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	6.68949944305373	6.59907602427973	6.38382140585696	6.61204978346216	6.985896655977	7.10034847463959	6.70096278919969	6.88156517442671	0.491454028273313	0.0183951172702245	0.121134894868423
Merged-chr19-6942505-4	chr19	6942405	6942605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285453)	promoter-TSS (NM_001285453)	-55.0	NM_001177361	107173.0	Mm.276555	NM_207220	ENSMUSG00000024958	Gpr137	AI428855	G protein-coupled receptor 137	protein-coding	7.27854314550774	7.2400951167758	7.30068035846933	7.25067770317122	7.19756032683266	7.32360727844096	7.32471366613273	7.15330089387651	-0.0227085465375441	0.897571118846988	0.961755066043397
Merged-chr10-80774772-4	chr10	80774676	80774876	+	905.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199322, intron 7 of 27)	intron (NM_199322, intron 7 of 27)	19573.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	4.28335942562445	4.47250004585368	3.96799439433643	4.13572286919459	4.52433923035147	4.36461323050734	4.69418093222064	4.71417009650186	0.825191151903482	0.0341630176720489	0.182504460738424
Merged-chr13-60658280-4	chr13	60658242	60658442	+	768.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	L1_Mus1|LINE|L1	56131.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	3.81679688533218	3.6193794124934	3.76870439931312	3.23591625562771	3.82434137263986	3.54778999011336	3.97634606782094	3.60859609799336	0.412475396885488	0.424642540403924	0.716342477702877
Merged-chr5-139750700-4	chr5	139750613	139750813	+	717.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026748)	TTS (NM_026748)	-14380.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	3.88353365759583	4.19413062614164	3.67204102973171	3.67910266475175	3.92941215163966	3.90244623992313	3.65823732345308	3.83202704701716	-0.095108508801189	0.840440172553081	0.939305852792169
Merged-chr11-8708841-4	chr11	8708745	8708945	+	966.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44310.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.30450934207108	4.79011949408328	4.77224696157925	5.47362138880503	5.35271585477518	5.11545225314456	5.27891412785554	5.51483196503799	0.333987340806946	0.337247577998924	0.647016127715841
Merged-chr7-109752273-4	chr7	109752201	109752401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020050)	promoter-TSS (NM_020050)	-38.0	NM_020050	56786.0	Mm.240668	NM_020050	ENSMUSG00000031021	Tmem9b	2310004K06Rik|AW539847|D7H11orf15|ICRFP703B1614Q5.3	TMEM9 domain family, member B	protein-coding	6.36830475150234	6.48354086167684	5.98127692840618	6.40341889541576	6.4246851342442	6.7352468237781	6.85893606916189	6.96038508060547	0.612882944104566	0.0108734496532722	0.0838237779097641
Merged-chr5-135460331-4	chr5	135460229	135460429	+	936.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 2 of 30)	intron (NM_146001, intron 2 of 30)	-65783.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	5.16859315015058	4.56024867929215	5.04932213202799	5.44697640874604	4.55238382881111	4.77993576249863	4.53469408517241	4.87763045068639	-0.845262601578941	0.0258744692388748	0.15200716787338
Merged-chr18-34624162-4	chr18	34624068	34624268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166406)	promoter-TSS (NM_001166406)	-456.0	NM_001166407	19348.0	Mm.258846	NM_009004	ENSMUSG00000003779	Kif20a	AA415432|Rab6kifl	kinesin family member 20A	protein-coding	5.36684211427608	5.09276592334138	5.08947710342405	4.97189701851216	5.20352850889366	5.08299989046205	5.47140548843212	5.41825154392628	0.327513377221523	0.284300854402939	0.596222858869618
Merged-chr13-32900821-2	chr13	32900721	32900921	+	783.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER70-int|LTR|ERVL	-2681.0	NM_173051	380839.0	Mm.250802	NM_173051	ENSMUSG00000079049	Serpinb1c	EIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1c	protein-coding	3.68301389659267	3.92124601958015	3.27406297795085	3.5053523175683	3.55584808212323	3.63711786421131	3.97336529966756	3.46153792443959	0.173666842757448	0.744450667984945	0.899296531468148
Merged-chr16-3714910-4	chr16	3714824	3715024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019453, intron 2 of 9)	intron (NM_019453, intron 2 of 9)	3200.0	NM_001161790	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	6.84311719031076	7.09936518818189	7.43313388243172	7.01243590087063	6.91085353971987	7.04955887915423	7.02929896654588	6.70494381658558	-0.250833895145647	0.244845744068401	0.555913085073197
Merged-chr11-76498323-2	chr11	76498223	76498423	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198018, intron 1 of 21)	intron (NM_198018, intron 1 of 21)	-3828.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	3.44249325945839	3.52483269401285	3.61206921210664	3.50597073116563	3.72410116249635	3.67421868121173	3.59760781669389	3.71146152786968	0.502211234439385	0.283711645112908	0.5957726925741
Merged-chr5-36538816-4	chr5	36538722	36538922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 3 of 13)	L1MEf|LINE|L1	-8199.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	5.38346376202789	5.05360543255425	5.35573823542078	5.74489260179122	5.35736221426114	4.82547754814663	5.23963242978895	5.48902290753098	-0.300451360179702	0.373718523480081	0.677211638825943
Merged-chr12-32793918-3	chr12	32793835	32794035	+	810.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26400.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	3.51121927527857	4.4225197926946	3.45471494854806	3.81085656351418	3.03681947552232	3.16886085454323	3.1177840148989	3.12614032672547	-2.79401327014318	2.09392027043856e-05	0.000530025430048174
Merged-chr8-84069443-3	chr8	84069368	84069568	+	782.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	2632.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	3.39135606041694	3.24994857878613	2.93498046440784	2.74992957225814	3.19145021076423	3.11240015192928	3.05405225782503	3.06353954407485	0.0304969400817923	0.960779672424964	0.986019634156535
Merged-chr11-3170984-1	chr11	3170884	3171084	+	1000.0	f0_balb.idr	intron (NM_030207, intron 6 of 32)	RSINE1|SINE|B4	22479.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	4.76687952374395	4.64243931674126	5.31678633650113	4.81440695143204	3.19776859229247	3.47121441702487	3.41189124721644	3.57713810702887	-5.71965027167576	2.50762180846747e-10	1.80840944989773e-08
Merged-chr17-28233596-4	chr17	28233488	28233688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 1 of 7)	intron (NM_011145, intron 1 of 7)	834.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	5.71476329823273	6.09079937933832	5.25604869907285	5.69374201537751	5.85448705745069	6.14542747786243	5.83178665930253	5.94616366271917	0.354479645790774	0.215978247151744	0.522408712476695
Merged-chr10-34307264-4	chr10	34307175	34307375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176968, intron 11 of 11)	intron (NM_176968, intron 11 of 11)	9854.0	NM_030203	72480.0	Mm.21485	NM_030203	ENSMUSG00000039485	Tspyl4	2610102M01Rik|B230210I21Rik|D10Bwg0791e	TSPY-like 4	protein-coding	5.46809324403765	5.73606736271984	5.27381618443261	5.72330061815886	5.62588245076405	6.37605905193901	5.61002202094394	5.73623642858727	0.486576972115579	0.119149908255412	0.38190374944411
Merged-chr1-58860866-4	chr1	58860756	58860956	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58354.0	NM_001277926	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	4.61020449880806	4.54184774298272	4.72092961760467	4.15096553442568	4.88735201631248	4.33827257093882	4.58916561336948	4.30758582064938	0.12344379812801	0.763130140448088	0.907113112121616
Merged-chr16-14439289-3	chr16	14439201	14439401	+	766.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008576, intron 14 of 30)	intron (NM_008576, intron 14 of 30)	77743.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	3.50348805469096	3.27585192821435	3.39736124681916	3.77976524025083	3.09049794295156	3.33093032148738	3.1438362123518	3.50194584037592	-0.85628992366352	0.1314625541237	0.403700467663439
Merged-chr2-35442283-4	chr2	35442179	35442379	+	969.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	19170.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	4.15492750586732	4.24077128298671	4.32419638868968	4.01473256282302	4.13752781291095	3.78899058435463	4.13725044469252	4.10715416124196	-0.31907155365967	0.451717950851041	0.736234475719597
Merged-chr8-128558187-3	chr8	128558084	128558284	+	970.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127470.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	5.12674629562685	5.36893528481514	5.12765530493268	5.5631964629048	4.26649530314055	4.05350002732696	4.38130368962352	4.34627225936886	-2.27869655457287	2.30014556923234e-09	1.38162077191889e-07
Merged-chr11-77371359-4	chr11	77371252	77371452	+	909.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	23072.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	4.78127374689393	4.75891195436774	5.22034513620742	5.40529091186029	4.37275742601836	4.04931874274298	4.96399058494186	4.48672544618969	-1.1856984603708	0.00567465079860127	0.0521922689228117
Merged-chr2-181411269-4	chr2	181411169	181411369	+	899.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028125, exon 3 of 3)	3' UTR (NM_028125, exon 3 of 3)	13119.0	NM_027656	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	4.21272380283885	4.40405149319945	3.95608512648882	4.21948205193726	4.20756622692049	4.24198503808047	4.40728396264841	4.57354198025381	0.363591489623503	0.365792936767152	0.670417458102074
Merged-chr18-82812531-4	chr18	82812428	82812628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43369.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	6.86151735238236	6.73878654073936	6.90157163971562	6.70838739235294	6.7222390425977	6.7600169423562	6.70376773402612	6.62701683593615	-0.131129487486262	0.507866477607676	0.773126660502261
Merged-chr2-90745913-2	chr2	90745813	90746013	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018828, intron 1 of 16)	CpG	543.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	4.70779727624845	4.60734655263839	4.85701475400737	4.52287969814402	4.8205153456555	5.06291034110328	4.42864926923924	5.07742546068917	0.416704190408974	0.249337847195395	0.560328612484111
Merged-chr14-68593593-4	chr14	68593474	68593674	+	935.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11502.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	4.92311097239802	4.96964710708578	5.34511496426651	5.05368743054188	4.83957965085775	4.78101684636003	4.62494223041013	5.08758671683414	-0.466759818209522	0.164305850403457	0.454462039553419
Merged-chr3-96663805-4	chr3	96663764	96663964	+	799.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001302471, exon 30 of 30)	3' UTR (NM_001302471, exon 30 of 30)	-6267.0	NM_001356539	213121.0	Mm.39732	NM_001081139	ENSMUSG00000038354	Ankrd35	4732436F15Rik	ankyrin repeat domain 35	protein-coding	3.42031107111563	3.95605351030598	3.48385246834056	3.11727935251307	3.95384052057126	3.77765767308293	3.69463668896186	3.90067750845944	0.937501960932555	0.0811709214237541	0.309190333623542
Merged-chr13-73600361-4	chr13	73600251	73600451	+	922.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3651.0	NM_146047	218335.0	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	4.52033891276598	4.41250988984178	4.80079931178213	4.82246835840445	4.57279262753508	4.78232589916421	4.97476179810566	4.90077680153164	0.309381010825979	0.390762874147016	0.69069060389646
Merged-chr18-53088904-2	chr18	53088804	53089004	+	998.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87388.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	2.74212270989381	2.46775975328654	2.67099919847385	2.65499374764691	2.98561903092328	2.98576373958931	3.09170375029013	3.20477306358603	1.94830766199787	0.00249662276315415	0.0277273624577498
Merged-chr15-9072212-6	chr15	9072031	9072231	+	963.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040395, intron 1 of 12)	intron (NM_001040395, intron 1 of 12)	871.0	NM_001040395	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	3.62036916210436	3.59292563987933	3.36684817926407	3.77868488529844	3.93042697658131	3.73924591223825	3.99847541079449	4.13563681505305	1.00070696778885	0.0390262462082026	0.198529497461004
Merged-chr11-120510853-4	chr11	120510750	120510950	+	974.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	19013.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	5.01048895752079	5.0630043833083	4.79114615796553	4.8198863639566	5.13313785242969	4.92750562519102	5.08349163105804	5.07354113874759	0.27812878067099	0.374348358423151	0.677767253502606
Merged-chr9-24512106-4	chr9	24512042	24512242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9002.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	6.10194433353368	5.87047551684359	6.59940193782257	6.90418461814214	5.96959119492153	5.68220012927942	6.00744412172261	6.13990578685249	-0.740251173608542	0.0158146373225611	0.108865577367754
Merged-chr8-83145621-3	chr8	83145521	83145721	+	911.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-19731.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	3.6165756246501	3.79446096495135	3.85061606534991	3.90086476625466	3.36930922127627	3.16065291782101	3.11691296042879	3.45132883631548	-1.78039837813952	0.00135306291438704	0.017198154496992
Merged-chr4-132178800-4	chr4	132178704	132178904	+	964.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33452.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	4.68668363240802	4.80715327149308	4.90804894376317	4.67332056778864	4.80082481109774	4.64814620161399	4.85049611475714	4.97009334657297	0.122343259154713	0.713122071771721	0.88527884500467
Merged-chr8-33903032-3	chr8	33902921	33903121	+	642.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042675, intron 1 of 6)	intron (NM_001042675, intron 1 of 6)	26842.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	2.3034242382547	2.73385902719469	2.30358573929389	2.34796957098576	2.43334513761677	2.90584952000314	2.78168626752353	2.95660688749933	1.74626903902265	0.0232891310979043	0.141490018984101
Merged-chr13-3825877-4	chr13	3825772	3825972	+	792.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11885.0	NM_020036	80796.0	Mm.21075	NM_020036	ENSMUSG00000033765	Calm4	2310037J09Rik|AI649108|DD112|Scarf	calmodulin 4	protein-coding	4.56281790731824	4.14196101893612	4.60015922172546	4.65145061022751	4.08108067925579	4.35251046055577	4.38542806909025	4.22255769123862	-0.596648878897264	0.136787044459413	0.411349382676314
Merged-chr4-35219719-4	chr4	35219610	35219810	+	919.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	intron (NM_001081343, intron 1 of 10)	6170.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	4.46232545697282	4.19958764600532	4.25002024706014	4.34236353546685	4.37267943785061	4.55139302679598	4.36228203066238	4.15189846132738	0.115401632474869	0.76427155292765	0.907569734027842
Merged-chr6-140888934-4	chr6	140888818	140889018	+	987.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	262033.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	5.1345703944335	4.92991886297384	5.41471686253272	5.44214399380733	4.9504629105258	4.68636600289209	4.94452261633013	4.81395663033652	-0.768469792790441	0.0210924407860872	0.132650542738373
Merged-chr16-3723490-4	chr16	3723385	3723585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5361.0	NM_001161791	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	6.97701451045014	7.32968113348949	7.06318223266737	6.20841910764465	7.1986576047494	7.29699393685586	6.86544523348227	6.43341552048366	0.0571239458510779	0.848379004296138	0.942718389328007
Merged-chr15-97816804-3	chr15	97816702	97816902	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	-1939.0	NM_001204281	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	4.91121767375698	4.68458104823647	5.17097337154623	5.17470474123639	4.00722171661419	4.22150231392734	4.18782471411997	4.54061958773586	-1.71707503157889	1.59507221357278e-05	0.000418487449649454
Merged-chr12-82122699-4	chr12	82122594	82122794	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47322.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	4.79629330272249	5.18364918143684	5.42150845160427	5.13863815861976	4.3094603514706	4.24077438387676	4.98430232708034	4.75491193896223	-1.11624272265467	0.00457815641207023	0.0444689676930605
Merged-chr11-103470701-4	chr11	103470601	103470801	+	945.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-58037.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	4.71757458172814	5.31806728351681	4.80110552374784	5.04921126450842	5.12822818866527	5.22765309597673	4.73841081216286	5.08414015119943	0.108405026107023	0.752689478669558	0.902626829735826
Merged-chr11-69410457-4	chr11	69410359	69410559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017426, intron 1 of 22)	CpG	3216.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	7.32789029188157	7.39441907214597	7.626751084354	7.08507348696004	7.51330605437851	7.66380743043231	7.51276596927501	7.42483349288969	0.226574539814713	0.246477467921387	0.557714330329541
Merged-chr11-90390892-4	chr11	90390786	90390986	+	872.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172563)	promoter-TSS (NM_172563)	31.0	NM_172563	217082.0	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	4.20886799057334	4.15404448223421	4.29661038881322	4.34919626473544	3.89971826549328	4.02886151435811	4.39609617200172	4.2511406245211	-0.271528565991417	0.513105128164347	0.776195139897776
Merged-chr7-30072733-5	chr7	30072576	30072776	+	980.159973	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177889, intron 1 of 6)	CpG	147.0	NM_177889	330502.0	Mm.295906	NM_177889	ENSMUSG00000098022	Zfp82	A030010D05|Krab16|Mszf3|Zfp-82	zinc finger protein 82	protein-coding	3.99500667257442	3.79654901292826	4.13318772440863	4.26958185090719	4.00678898160313	4.06799051056159	3.97873512719937	3.83934784095185	-0.258808722416914	0.555808158700717	0.801705036623952
Merged-chr4-108870176-3	chr4	108870088	108870288	+	665.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8882.0	NM_023537	69908.0	Mm.41580	NM_023537	ENSMUSG00000003411	Rab3b	2610528C18Rik	RAB3B, member RAS oncogene family	protein-coding	3.90180635548951	3.3389676792271	3.20170980733768	3.39782564319476	3.49979675567999	3.57650851308865	3.60965287384772	3.81414827179794	0.463380417562619	0.386265637366799	0.687552275421561
Merged-chr5-3461655-4	chr5	3461545	3461745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	-82188.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	6.60335442290208	6.20133259979019	6.21573758609815	6.77210233616255	6.37753334087177	6.54783961137826	6.54015559568549	6.5533878289613	0.0201591408922835	0.933808916730889	0.976147238996645
Merged-chr2-49745169-3	chr2	49745067	49745267	+	755.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 21 of 25)	intron (NM_008449, intron 21 of 25)	-42519.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	3.44748507829755	3.16873096312533	3.44794875707478	3.34267327018863	3.62308691631844	3.56313390610338	3.37850709303016	3.60252673383881	0.656347773203761	0.19303410141541	0.493162602528256
Merged-chr11-118290304-4	chr11	118290208	118290408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033528)	promoter-TSS (NM_001033528)	-64.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	9.03928259592298	9.14051875536302	8.8589497604816	8.51581982079401	9.12396655854272	9.07554091651148	8.79153171187061	8.81767873394598	0.0704946584275215	0.707470161911978	0.882481093786388
Merged-chr2-163716597-4	chr2	163716508	163716708	+	895.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	22571.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	3.88960585288295	4.0105036352225	3.94389121760037	4.37157232972458	3.77485477741525	4.11911243595739	4.20741611636123	4.38238666891011	0.125371045346046	0.785954617038238	0.916745275402542
Merged-chr11-116412579-4	chr11	116412483	116412683	+	913.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 1 of 18)	CpG	449.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	4.64231369375094	4.40193259102915	4.410968799998	3.83869286568589	4.35535814546928	4.49803051659863	4.39068584787231	4.52933543483121	0.241336740136626	0.569584862944988	0.809408871400134
Merged-chr2-28204340-4	chr2	28204258	28204458	+	757.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038613, intron 1 of 5)	intron (NM_001038613, intron 1 of 5)	-1331.0	NM_001038612	56177.0	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	3.57878448612718	4.19079782972957	3.57921070941182	3.81336698017218	4.08807109363358	3.93020506997662	3.84550564564479	4.0475699695935	0.452167652545975	0.342189666962031	0.651179507664699
Merged-chr5-99985038-4	chr5	99984885	99985085	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6047.0	NM_001077267	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	4.50899546730642	4.12323410251867	4.46971640602694	4.62844057629064	4.18215662785967	4.55818151747724	4.36601911379252	4.46683653760153	-0.146088554247366	0.711814661386446	0.884648604581564
Merged-chr16-78217883-4	chr16	78217806	78218006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37548.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	6.68399759882682	6.86382130197177	6.74424727988219	6.77048168012759	6.93196512336262	6.64902256353812	6.79326419581713	6.37400578135362	-0.0783761618086377	0.718792266004813	0.887684154524562
Merged-chr11-114983315-3	chr11	114983187	114983387	+	601.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145437, exon 4 of 4)	3' UTR (NM_145437, exon 4 of 4)	6599.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	2.81465760005535	3.28351780501968	2.87412856283455	2.78725529588561	2.33010542103066	2.41282729328088	2.46632404891783	2.61881807918851	-2.99038218883706	0.000528289160922378	0.00806760227103496
Merged-chr11-62576004-4	chr11	62575876	62576076	+	935.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011706, exon 2 of 16)	5' UTR (NM_011706, exon 2 of 16)	1490.0	NM_011706	22368.0	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	4.69257994675508	4.71068073204933	5.14132501205492	4.22921440434939	4.49806404957857	4.866921648267	4.59253065253756	4.56958127147972	-0.1815183334462	0.653436329152185	0.855012031190915
Merged-chr3-103214397-3	chr3	103214296	103214496	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42741.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	4.20033036592631	3.92345708835173	4.36174514420121	3.6292541913746	5.20973961594931	5.10715769812876	5.41133925261397	5.19451090445434	2.68537528725414	2.41995512333351e-12	2.41924137252466e-10
Merged-chr3-127553231-6	chr3	127553094	127553294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197997)	promoter-TSS (NM_197997)	155.0	NM_138593	28036.0	Mm.291032	NM_138593	ENSMUSG00000027968	Larp7	C330027G06Rik|D3Wsu161e	La ribonucleoprotein domain family, member 7	protein-coding	7.42007745283413	7.52353946992477	7.9113208396448	7.16238408810009	7.41058318766546	7.73793860436774	7.30354155824057	7.41620605715053	-0.0647877396213004	0.770236153569063	0.910083821330452
Merged-chr6-46204736-1	chr6	46204636	46204836	+	788.666687	f0_balb.idr	intron (NM_001004357, intron 9 of 23)	ORR1B2|LTR|ERVL-MaLR	-1039660.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	3.3565384782156	3.29698344294083	3.5826169184983	3.46966180937241	2.51325903628761	2.68219125162231	2.65073327440164	2.73617735661992	-5.54501454605918	4.77906136357712e-07	1.78005656095267e-05
Merged-chr10-7820378-4	chr10	7820284	7820484	+	908.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026141, intron 12 of 12)	intron (NM_026141, intron 12 of 12)	-12086.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	4.07611130672652	4.46416522772069	3.80820587384811	4.25802588326931	4.10411926927957	3.80385773336737	4.27924398373327	4.2963095326801	-0.112706312304089	0.803095093181911	0.923989034972282
Merged-chr10-79855094-4	chr10	79855001	79855201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029447)	promoter-TSS (NR_029447)	-130.0	NR_029447	414101.0	Mm.401339	NR_029447	ENSMUSG00000091994	E130317F20Rik	-	RIKEN cDNA E130317F20 gene	ncRNA	6.22823795030454	7.45635855882306	6.53752864955026	5.90336308952583	6.72632577995371	7.34628522160349	6.98044630100035	6.58312365114851	0.368143165188594	0.484387345379316	0.758512965718938
Merged-chr5-66112239-4	chr5	66112148	66112348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-14069.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	8.25829113734219	8.49324249994311	8.17661118195208	8.34238432579298	8.20304690886681	8.34195547244949	8.27127511638841	8.02162981745482	-0.142327309127543	0.38839351147124	0.688981838974675
Merged-chr7-3720475-3	chr7	3720374	3720574	+	706.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011095)	promoter-TSS (NM_011095)	-92.0	NM_011095	18733.0	Mm.326531	NM_011095	ENSMUSG00000058818	Pirb	Gp91|LIR-3|Lilrb3|PIR-B	paired Ig-like receptor B	protein-coding	2.83166263343625	2.75619199298473	2.83193911043033	2.31351006182176	3.93365348869898	3.9085555660606	4.07664739608099	3.81971875501852	7.8212061873604	1.05124186027762e-15	1.88479456858188e-13
Merged-chr1-138856747-4	chr1	138856562	138856762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081226, exon 1 of 3)	exon (NM_001081226, exon 1 of 3)	192.0	NM_001081226	69549.0	Mm.264673	NM_001081226	ENSMUSG00000079283	2310009B15Rik	-	RIKEN cDNA 2310009B15 gene	protein-coding	6.27567048810779	6.47238191346202	7.05838787979388	5.12869516472936	5.82722800434792	6.27743235505059	6.04641149111312	6.11582688615487	-0.508219648481916	0.362950211361151	0.668158239901494
Merged-chr9-22478352-3	chr9	22478255	22478455	+	953.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178415, intron 2 of 22)	intron (NM_178415, intron 2 of 22)	2640.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	4.24115075983641	4.1727223317178	4.39992175978819	4.42837387642625	4.13664428411371	3.72040389792294	3.83602168757707	3.95776466411976	-1.00930170709639	0.0215791820358643	0.134629204849749
Merged-chr6-87547606-4	chr6	87547532	87547732	+	943.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14373.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	4.20361994631485	4.39343743466536	4.00594478731636	4.21645354013187	4.50095102566957	4.12758084385467	4.3165654317418	4.33339543307961	0.294456276237373	0.460382564234413	0.742653156705752
Merged-chr13-89376297-3	chr13	89376182	89376382	+	852.422241	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164354.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	3.58966021111604	3.23345724318089	3.46617445244867	3.47375915412548	4.31278490127834	4.12054211012062	3.84039210119558	3.80595769624311	1.75448528901901	0.000360778070017586	0.00590069444985794
Merged-chr10-67182780-4	chr10	67182681	67182881	+	966.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 2 of 25)	intron (NM_207221, intron 2 of 25)	-2969.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	4.73289872373483	4.85124480183896	4.51536536101129	5.21444360861525	4.92798922966525	5.15916988798001	4.82592616506225	4.80850290434287	0.113547283696001	0.756015848192729	0.904107057434648
Merged-chr2-30415589-4	chr2	30415494	30415694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138748)	promoter-TSS (NM_138748)	154.0	NM_007760	12908.0	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	7.47340104917815	7.52550738028691	7.12682501190512	7.05377181357072	7.32297033547318	7.39778533379407	7.60082538194597	7.39366896511021	0.171011793071882	0.39807636684411	0.696321100599351
Merged-chr7-139212553-4	chr7	139212452	139212652	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027164)	promoter-TSS (NM_027164)	-436.0	NM_027164	76612.0	Mm.17757	NM_027164	ENSMUSG00000015980	Lrrc27	1700071K18Rik|2310044E02Rik	leucine rich repeat containing 27	protein-coding	5.38987556801478	5.68694945616098	5.50376070145236	5.87911324318478	5.44100505377351	5.15800810011451	5.24100163836486	5.26321474721643	-0.626546306603479	0.0340332805281115	0.182084701947568
Merged-chr1-60000415-2	chr1	60000315	60000515	+	627.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357296, intron 9 of 10)	L1M4b|LINE|L1	42707.0	NM_001357296	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	3.28859694896617	3.44845549051107	3.34619874524593	3.03863791526548	3.45318744617336	3.46049274625623	3.09125719116067	3.34436543809837	0.243197073771939	0.660524680115194	0.858948291634818
Merged-chr16-13294451-3	chr16	13294373	13294573	+	566.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122667, intron 2 of 16)	intron (NM_001122667, intron 2 of 16)	29394.0	NM_181860	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	3.18068501184112	2.9594291184755	2.90503174781086	2.75033267494714	2.78035489671253	2.73763147831407	2.89458414106008	2.90357077329515	-0.541696557053625	0.390634907771098	0.690614974650227
Merged-chr5-134704363-3	chr5	134704251	134704451	+	812.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007925, intron 36 of 36)	intron (NM_007925, intron 36 of 36)	-15761.0	NM_010717	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	3.26858747810363	3.65830101602384	3.38960662424986	3.40602417867035	3.51813416793621	3.44341502605152	3.31896127415065	3.5497504043176	0.078245106141179	0.878841570996293	0.954708519232108
Merged-chr1-55513057-4	chr1	55512934	55513134	+	858.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	107088.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	4.5107610468116	4.39504341583484	4.51147305426044	4.34576135999159	4.94771852843867	4.72515766621916	4.53170145487599	4.46603382425598	0.572784696604145	0.116736461736993	0.378058049387613
Merged-chr13-37620739-4	chr13	37620620	37620820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-205318.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.17024313215867	4.96475079303388	6.17516917045226	5.70948919809961	4.68756185641288	5.28103889826551	5.21137111003206	5.32745367276127	-0.792520449725693	0.0436578934076322	0.212698507519634
Merged-chr4-119294639-4	chr4	119294571	119294771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011732)	promoter-TSS (NM_011732)	-158.0	NM_011732	22608.0	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	8.6077340723434	8.53280015699061	8.39534178997737	8.52631036928079	8.66021277802547	8.76857842523682	8.73586078141128	8.6306912919673	0.226455300680193	0.120018655185841	0.383525895620107
Merged-chr11-96916636-4	chr11	96916534	96916734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308183)	promoter-TSS (NM_001308183)	-120.0	NM_030248	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	8.18796709218143	8.48573961101576	7.77579786456246	8.03990498319784	8.1979581627248	8.08377769114125	7.98767956244903	7.87166567860715	-0.135476844787364	0.496396227805482	0.766375739609717
Merged-chr12-86891572-2	chr12	86891472	86891672	+	886.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6758.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	2.71545567504123	2.76400317417475	2.71571358750465	2.83774621629355	2.98981916931313	3.0845177092175	2.96343789019584	3.13792102831304	1.20413065640684	0.0469726817382542	0.222868185138461
Merged-chr7-48881650-1	chr7	48881550	48881750	+	566.0	f0_balb.idr	promoter-TSS (NM_001360812)	promoter-TSS (NM_001360812)	-54.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	4.25204443327054	4.22410214186494	4.01259774514178	3.93780377386664	4.06277366971835	4.46605982716921	4.31735869859206	4.29304558180984	0.456470333018171	0.264458393136779	0.576455127446606
Merged-chr8-103940709-4	chr8	103940610	103940810	+	884.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160915.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	4.46758940276311	4.31428843287235	4.46830333751092	4.92233317469139	4.15366368714525	4.55699166880075	4.36428934578932	4.03482895061152	-0.685994550363031	0.102791492867392	0.35216269069915
Merged-chr11-4629850-3	chr11	4629755	4629955	+	912.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027797, intron 1 of 3)	MIR3|SINE|MIR	156.0	NR_027797	327860.0	Mm.186065	NM_177799	ENSMUSG00000056288	Gm11961	-	predicted gene 11961	ncRNA	3.6770730571796	3.57691637567134	3.40809575297371	3.70860425386789	3.58881797725953	3.5809308414092	3.33566596177957	3.52088340566995	-0.299145940830377	0.548567494519276	0.797514668901371
Merged-chr11-69365104-4	chr11	69365011	69365211	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146019, intron 1 of 39)	intron (NM_146019, intron 1 of 39)	4315.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	5.16865774614747	4.47256953522402	4.5455102382493	4.61726155003133	5.07237009747467	4.7233049100693	4.69090554964318	4.85792974169296	0.268070158096652	0.4727098016383	0.750781215878538
Merged-chr18-38943456-3	chr18	38943362	38943562	+	911.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 4 of 4)	intron (NM_001033789, intron 4 of 4)	-24763.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	4.760685823248	5.36749696671678	5.03205861088562	5.27256701299427	3.98564468390342	4.45082878406521	4.44668221709495	4.41609755609777	-1.77425076301791	5.43573503540282e-06	0.000159880241357412
Merged-chr6-134027222-4	chr6	134027105	134027305	+	988.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-8495.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	4.88965484994574	5.42699234833633	4.60359488587974	4.98338905002443	5.19038426439689	4.87042563620525	4.97198462021935	4.73125308832014	-0.105936025010353	0.771341034341222	0.910379161490028
Merged-chr11-55209888-3	chr11	55209760	55209960	+	620.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153139, intron 1 of 10)	intron (NM_153139, intron 1 of 10)	5520.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	3.68326716184457	3.63001018585446	3.46081834256824	3.78538437429466	3.25112593499979	3.90261558703731	3.66845303344073	3.62947413142911	-0.0791984327884267	0.878736635277307	0.954708519232108
Merged-chr7-16309471-4	chr7	16309341	16309541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133234)	promoter-TSS (NM_133234)	-142.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	7.66740400165126	8.25981846880136	7.22981041585849	7.2995773816029	7.9167015111786	8.13102178087086	7.72799983938431	7.45323993531007	0.193172261163285	0.46673179874529	0.746483522894369
Merged-chr6-30337097-4	chr6	30337034	30337234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32595.0	NM_001169576	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	6.3681215319759	6.46570924788169	6.25442090176228	6.79569334194451	6.53012386288705	6.34960008339608	6.35475199822756	6.64236771634316	-0.0443463526129913	0.852635126324818	0.944594954733765
Merged-chr8-120790883-4	chr8	120790765	120790965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52226.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	6.0427491642733	5.92310630339514	6.39160262280694	6.76988280523832	5.80504128576602	5.2370914791202	5.92591326400096	5.90627296147841	-0.920568578757561	0.00341368627984577	0.035327533543638
Merged-chr17-27909328-4	chr17	27909241	27909441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026836)	promoter-TSS (NM_026836)	35.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	5.94933889634237	6.06984179373601	5.80560715357225	6.10186534175434	6.06336936657406	6.35326188166851	5.80135709950061	6.19360893004302	0.18194432452105	0.47069586487868	0.749352684420019
Merged-chr10-128748448-4	chr10	128748362	128748562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253704)	promoter-TSS (NM_001253704)	7.0	NM_001253704	78428.0	Mm.27358	NM_030100	ENSMUSG00000064030	Pym1	A030010B05Rik|Pym|Wibg	PYM homolog 1, exon junction complex associated factor	protein-coding	6.09750671085697	6.02964790324562	5.78756695348551	5.99358510596966	6.55172337679927	6.31657816840552	6.36654104474983	6.4911879581339	0.692660339130453	0.0022966138606401	0.0260262184344056
Merged-chr16-28929990-3	chr16	28929897	28930097	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177718)	promoter-TSS (NM_177718)	-299.0	NM_177718	239796.0	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	3.14863997722125	3.26922327271115	3.14904341461294	3.44273266066015	2.99085295009679	2.77157193256022	3.13737765681834	3.08853917737785	-1.06203569902806	0.0814061269244506	0.309538179230852
Merged-chr2-157069653-4	chr2	157069558	157069758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	9607.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	6.01579757823602	6.06567580942646	6.32281325111263	6.16905373511191	5.54094892273642	5.44195839338615	5.55468951173041	5.48978468953473	-1.04326421885565	4.05749761575138e-05	0.000944436307362876
Merged-chr12-103144346-2	chr12	103144246	103144446	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081017, intron 38 of 48)	intron (NM_001081017, intron 38 of 48)	97800.0	NM_133364	170952.0	Mm.217019	NM_133364	ENSMUSG00000041669	Prima1	B230212M13Rik|BB120497|PRiMA	proline rich membrane anchor 1	protein-coding	2.41901323535342	2.60384005991102	2.6313954856332	2.48842997683883	2.54516132346265	2.7379937775785	2.90960026714836	2.69383404312867	0.949374912086149	0.153827901006723	0.438762418984475
Merged-chr3-138198322-4	chr3	138198203	138198403	+	806.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11590.0	NM_001163386	67741.0	Mm.383221	NM_001163385	ENSMUSG00000012042	4930579F01Rik	-	RIKEN cDNA 4930579F01 gene	protein-coding	3.36395906707749	3.44066616645303	3.49796123193526	4.1243758966568	4.10006870281638	3.61562257317196	3.76794444321325	4.24801980487943	0.832354828837664	0.151410601138768	0.435022813371129
Merged-chr14-47393919-3	chr14	47393826	47394026	+	843.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144553, intron 15 of 18)	PB1|SINE|Alu	20066.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	3.50789325125921	3.61897921170538	3.9891437656987	4.15739967354371	3.3145591395649	3.29355704785794	3.4363219306461	3.56345186518974	-1.47322069407563	0.00684551509183084	0.0599110929203772
Merged-chr16-87495163-1	chr16	87495063	87495263	+	943.0	f0_balb.idr	promoter-TSS (NR_040375)	promoter-TSS (NR_040375)	706.0	NM_009840	12469.0	Mm.328673	NM_009840	ENSMUSG00000025613	Cct8	AI132397|Cctq|Tcpq	chaperonin containing Tcp1, subunit 8 (theta)	protein-coding	3.70426597276231	4.05564653346732	4.02300739705001	3.84466020896967	3.9636327948932	3.88380464978013	4.05120027032577	4.31268808137245	0.404791965420478	0.355852574468341	0.662565863561224
Merged-chr5-137741447-6	chr5	137741294	137741494	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347505)	promoter-TSS (NM_001347505)	-226.0	NM_001347505	243300.0	Mm.74750	NM_175521	ENSMUSG00000045348	Nyap1	6430598A04Rik	neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1	protein-coding	4.50642970084129	4.20635425028845	4.12234856293053	4.08404236981846	4.47999544923154	4.24692516124636	4.33100002059311	4.30540755451633	0.297608703214813	0.452164284274916	0.73655715833038
Merged-chr1-89931230-2	chr1	89931130	89931330	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010262)	promoter-TSS (NM_010262)	-54.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	2.91197834150787	2.86033013508616	2.85271960445933	2.77768396020623	2.73309304510257	2.82992312517086	2.9012856743079	2.72336966326969	-0.235288286706417	0.701821558457004	0.879887873504074
Merged-chr13-17977041-4	chr13	17976938	17977138	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16313.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	5.63296849336145	5.43427009268118	5.36779915984602	5.50916115724849	5.39389247076891	4.82031193080112	5.2808431669932	5.72225809500873	-0.248718586606535	0.436077089946268	0.724985546440075
Merged-chr19-29522234-4	chr19	29522128	29522328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015567)	promoter-TSS (NR_015567)	-54.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	7.8095503701233	7.84675593859084	7.547596090385	7.88353735260311	8.01083189293872	7.88459752322205	8.0523944197058	7.63347126067263	0.16151490287492	0.376037016987619	0.678890741477518
Merged-chr19-5073358-2	chr19	5073258	5073458	+	815.785706	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5280.0	NM_054042	70445.0	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	2.97344342193077	2.76054763352285	3.03486098137038	2.62501400590013	3.04676121962066	3.08500654403072	3.13570487667665	3.14711604350227	1.11097174196536	0.0666825104781074	0.275280965857859
Merged-chr12-31351438-4	chr12	31351311	31351511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007861)	promoter-TSS (NM_007861)	60.0	NM_007861	13382.0	Mm.3131	NM_007861	ENSMUSG00000020664	Dld	-	dihydrolipoamide dehydrogenase	protein-coding	7.53988281212841	7.36808493900331	7.61995789805359	7.24688111889583	7.71542438463655	7.7362744301469	7.67231491957489	7.48997627809786	0.289195635118103	0.11477738892034	0.374827480545094
Merged-chr15-83595168-4	chr15	83595064	83595264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183017)	promoter-TSS (NM_183017)	-7.0	NM_183017	223723.0	Mm.46778	NM_183017	ENSMUSG00000016757	Ttll12	BC055368|D430005B17	tubulin tyrosine ligase-like family, member 12	protein-coding	6.4665309605715	6.79714217946211	6.53549703134265	6.41498081948531	6.54012374725394	6.72798437253978	6.56632466488191	6.78417879069875	0.140792552867284	0.517303700918324	0.778803651723338
Merged-chr7-79811148-4	chr7	79811045	79811245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008589, exon 1 of 2)	exon (NM_008589, exon 1 of 2)	418.0	NM_008589	17293.0	Mm.31472	NM_008589	ENSMUSG00000030543	Mesp2	bHLHc6	mesoderm posterior 2	protein-coding	5.21148896092259	5.20991853127511	5.11542329881433	5.08343068819819	5.26855809930231	5.38544147579217	4.98662423080304	5.29874196862594	0.170910313331617	0.564959003129282	0.807153948811529
Merged-chr11-102393413-2	chr11	102393313	102393513	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016759)	promoter-TSS (NM_016759)	10.0	NM_001252347	51799.0	Mm.2560	NM_016759	ENSMUSG00000006575	Rundc3a	RPIP-8|Rap2ip|Rpip8	RUN domain containing 3A	protein-coding	3.44362051949583	3.25369394662621	3.15595121207422	2.53147656735465	3.21780110989688	3.75923467994502	3.14412211187246	3.21700451716531	0.737045917157244	0.283931062644985	0.595969718026818
Merged-chr2-164823442-4	chr2	164823352	164823552	+	892.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028028, intron 1 of 1)	intron (NM_028028, intron 1 of 1)	766.0	NM_028028	71971.0	Mm.161149	NM_028028	ENSMUSG00000017764	Zswim1	2410003H12Rik|AI850991|BB046916	zinc finger SWIM-type containing 1	protein-coding	4.02744901101383	4.38253518525632	4.07790217956777	4.12263258439323	3.66714268880044	4.2518712451651	4.28189641063393	4.29908277105245	-0.046512513488467	0.917745330159224	0.969719335386341
Merged-chr11-3649113-4	chr11	3649031	3649231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159288)	promoter-TSS (NM_001159288)	-317.0	NR_002321	544752.0	Mm.390314	NR_002321	ENSMUSG00000056579	Tug1	AI316828	taurine upregulated gene 1	ncRNA	7.92966022735835	8.18372906447976	8.02242624102689	7.99023494032267	8.24976303352554	8.28524747925994	8.21788323802926	8.10225678142132	0.232174534541153	0.142370097290486	0.419897244509492
Merged-chr6-48016293-4	chr6	48016197	48016397	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31497.0	NM_001347139	72306.0	Mm.381553	NM_001081382	ENSMUSG00000071477	Zfp777	2500002G23Rik	zinc finger protein 777	protein-coding	4.8791943303876	4.74767456451004	4.88002004011285	5.00128023081915	4.23492674853918	4.4338045728336	4.5193475698058	4.73679113464841	-0.874257541542775	0.0158084969160407	0.108865422018852
Merged-chr5-25087145-3	chr5	25087062	25087262	+	788.399963	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 1 of 15)	intron (NM_145401, intron 1 of 15)	13480.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	3.52251985499474	3.43167555578584	3.29886629153827	3.79540849944457	3.02429684272866	3.21320644276096	3.22540019225991	3.71119949812888	-0.74070814616529	0.21086775421866	0.515501987825595
Merged-chr5-67943377-4	chr5	67943307	67943507	+	783.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038182)	promoter-TSS (NR_038182)	-326.0	NR_038182	73865.0	Mm.66946	NR_038182	ENSMUSG00000106880	4930425K10Rik	-	RIKEN cDNA 4930425K10 gene	ncRNA	4.00741200838038	3.94945987111695	4.32777137220259	4.42578272434661	4.08324435409454	4.13020217667927	4.34720812383312	4.19775267097706	-0.0438430335746545	0.917763380208722	0.969719335386341
Merged-chr6-54171904-1	chr6	54171804	54172004	+	874.3333130000001	f0_balb.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	-92954.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	3.5678757480481	3.12956691656244	3.70615229222542	3.99260844236897	2.91783018848119	3.07510364830301	3.02789545079548	3.17300571761091	-2.33561858363385	0.00032234500995883	0.00537712572389491
Merged-chr15-36334568-3	chr15	36334456	36334656	+	982.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51409.0	NM_001357631	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	4.36474837553156	4.586799175888	5.16389502990944	4.84353781266489	3.95435925319368	4.07906425903773	3.87456366192613	4.17153774704139	-1.82840932625139	2.78559825253233e-05	0.000680854273527518
Merged-chr4-126148443-4	chr4	126148366	126148566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172145, exon 1 of 3)	5' UTR (NM_172145, exon 1 of 3)	463.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	5.9288721698776	5.62938163782785	5.8864631589512	5.66791045470636	5.73704520524682	5.61901866203536	5.85644107567917	5.81418747031851	-0.0201989625870999	0.93743159727505	0.977334367260951
Merged-chr11-120353841-4	chr11	120353731	120353931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5153.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	7.90827009678545	7.78691306445073	7.58034694986584	7.63322682082283	7.768977261469	8.10801868990944	8.17597297385253	7.56593164295256	0.253404288400049	0.206568400149528	0.51056782256557
Merged-chr7-48881125-4	chr7	48881025	48881225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013368)	promoter-TSS (NM_001013368)	-84.0	NM_001013368	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	8.2210019888295	8.28144969058714	7.66899201816387	8.06263949061108	8.17629899366701	8.27175284496557	8.49457350572939	8.00211453000763	0.213112684083291	0.28298885801433	0.595192894003656
Merged-chr6-57742980-2	chr6	57742880	57743080	+	827.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	40525.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	3.03941797399396	2.88484484849724	3.21276826420834	2.88724728866393	3.01103166146914	3.21163558277327	3.19944929887202	3.03827220999563	0.452375070500237	0.433236396617845	0.722830392839943
Merged-chr1-131097840-4	chr1	131097745	131097945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008551)	promoter-TSS (NM_008551)	-2.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	7.95459298190837	8.45391442630877	7.83019689042005	7.61142987784454	8.06118354583154	8.16829529393337	8.28566489120885	7.74461533445922	0.104125290134113	0.646084507737339	0.851204149823479
Merged-chr3-37302903-3	chr3	37302806	37303006	+	604.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9540.0	NM_145825	207175.0	Mm.344708	NM_145825	ENSMUSG00000045031	Cetn4	-	centrin 4	protein-coding	3.4316320133943	3.29874864507409	3.26703233911111	3.28442203085582	2.98114443606932	3.11918514183506	3.64926854357192	3.20537514067674	-0.211528307957961	0.714196559224873	0.885697313573214
Merged-chr17-29362125-4	chr17	29362027	29362227	+	962.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013710, intron 1 of 15)	intron (NM_013710, intron 1 of 15)	1213.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	4.85394593426162	4.64125493454895	4.77891651040262	4.82954526008732	5.13065429119239	4.91507209736503	4.71724965680715	5.25667267563511	0.489233148921542	0.142914659190208	0.420926160735707
Merged-chr11-75163738-4	chr11	75163589	75163789	+	974.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001098203)	TTS (NM_001098203)	4463.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	5.04509452454374	5.69971823875804	5.93217386804216	5.66381144145014	5.22974666710268	5.29781518906178	5.09421778996586	4.83994847338389	-0.88614521918921	0.00801701216988341	0.0673007323080707
Merged-chr11-116413127-4	chr11	116413023	116413223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027258)	promoter-TSS (NM_027258)	-91.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	6.15751175248455	6.0928527503336	5.60988582777357	5.75130881117238	6.45427106814194	6.65378016444648	6.36513369865095	6.5055975751483	0.885660821355399	0.000314047482744732	0.00525842996337034
Merged-chr12-17271491-4	chr12	17271372	17271572	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027959, intron 2 of 12)	ORR1D2|LTR|ERVL-MaLR	4877.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	4.81104996209144	4.88909643189246	4.65977616048868	4.96379603808129	4.51755523531313	4.98322367928664	4.46758327382699	4.65676424034378	-0.383291674584898	0.280963340591079	0.59313371948668
Merged-chr2-156729903-5	chr2	156729831	156730031	+	932.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042487, intron 1 of 6)	intron (NM_001042487, intron 1 of 6)	8652.0	NM_001042487	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	5.29388271862405	4.86190917023604	5.34612492615528	5.05399568326574	4.56606848819256	4.83921671477708	4.68111613616206	4.56826602669364	-0.980551396831689	0.00442680368152127	0.043401578408678
Merged-chr16-31700394-4	chr16	31700241	31700441	+	920.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 1 of 22)	B1_Mus1|SINE|Alu	4793.0	NM_001357281	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	3.88607584976036	3.77248400923906	3.62627644850403	3.82978261985976	3.52620613539081	3.7442174073822	3.77302355355078	4.0596468677659	-0.00331451874788809	0.994408934355546	0.997970159160993
Merged-chr11-106036811-4	chr11	106036722	106036922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027946)	promoter-TSS (NM_027946)	-50.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	8.15157560364191	8.32532291346078	7.85459654869626	8.03292381197571	8.1945538116761	8.3849557162043	8.28117847684475	8.25391593544086	0.224106871739713	0.189273824824577	0.488162967504478
Merged-chr10-121507503-4	chr10	121507368	121507568	+	986.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31218.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	4.79463413861929	4.61944853216988	4.34515933870311	4.79907379009089	5.09847185773214	4.85277272853667	4.94872637889282	5.33947473170634	0.821477276148077	0.0192864107052358	0.124878325078503
Merged-chr2-58485237-4	chr2	58485159	58485359	+	807.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355048, intron 3 of 10)	intron (NM_001355048, intron 3 of 10)	76151.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	3.74099014225718	3.30146669852768	3.40775560483497	3.82545378090077	3.72519188149307	3.81008424791911	3.45723523062358	3.8335765941595	0.352157704506386	0.500324418862721	0.768850577358824
Merged-chr14-52198355-4	chr14	52198248	52198448	+	854.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_201637, exon 37 of 37)	3' UTR (NM_201637, exon 37 of 37)	-1109.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	4.04374576023306	4.14480196047787	4.09591686496884	3.97310575662484	4.47900264100179	4.41213237891101	4.26476659759666	4.55532307273979	0.922351457283277	0.0165149953901321	0.112347701998161
Merged-chr9-107289764-7	chr9	107289647	107289847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316691)	promoter-TSS (NM_001316691)	130.0	NM_178907	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	6.76136596761585	6.75186531663067	7.3573982407507	6.6501906410274	7.1846352463022	7.21197700913023	7.24286001421153	7.10159686385348	0.394331419254027	0.0800625736891085	0.30651753079911
Merged-chr10-26890772-4	chr10	26890661	26890861	+	885.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 12 of 14)	intron (NM_176837, intron 12 of 14)	118249.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	4.22158696913123	4.21780643692469	4.35907151207815	4.45444092340259	4.54527576143164	4.44277955329993	4.53722819144019	4.1707487415732	0.257216462383618	0.505107359700623	0.771259583750871
Merged-chr8-67879501-4	chr8	67879395	67879595	+	895.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177698, intron 8 of 14)	intron (NM_177698, intron 8 of 14)	31451.0	NM_030263	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	4.86146564978189	4.5091029855227	5.08635566991099	5.12175808330013	4.33157309375118	4.53662344368077	4.69160898974597	5.02283260504882	-0.535605413178789	0.168364819467722	0.460428749227486
Merged-chr2-131478468-4	chr2	131478394	131478594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13368.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	6.12812230284887	6.17657067015876	6.02224785237566	6.02109705758463	6.2998122782217	6.4759837381802	6.11810488631704	6.14515735639147	0.279167084043551	0.227070422779476	0.535725428645169
Merged-chr6-98846453-4	chr6	98846342	98846542	+	963.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	181856.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	3.96703983933803	4.61709744994766	4.18562927984059	4.35358143229684	4.83276418367688	4.45758780257477	4.5887016431163	4.13194040177233	0.520117547701979	0.226390575198742	0.53500181779785
Merged-chr19-7018429-5	chr19	7018330	7018530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362399, intron 2 of 14)	intron (NM_001362399, intron 2 of 14)	1039.0	NM_153795	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	5.3365860268881	5.34572619935535	5.42516209278732	5.1995689083098	5.35191803992421	5.51199832922654	5.45286468624664	5.52940909874886	0.249542914848393	0.368070108036981	0.672560002604426
Merged-chr7-139068296-2	chr7	139068196	139068396	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028708, intron 19 of 19)	intron (NM_028708, intron 19 of 19)	-17705.0	NM_011993	26757.0	Mm.250414	NM_011993	ENSMUSG00000025478	Dpysl4	AI173505|CRMP-3|Crmp3|DPY4|Drp-4|Ulip4	dihydropyrimidinase-like 4	protein-coding	3.09306631463442	3.02792187229749	2.77473733948249	2.74512798453677	2.91641474396297	3.20556757854813	3.02402740523904	3.03400275757116	0.566474698288132	0.347209027837649	0.65535995064671
Merged-chr12-85444858-4	chr12	85444749	85444949	+	942.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29041.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	4.60347171075716	4.7499303354967	4.76559747824902	4.80118803006799	5.0833930067268	5.07959797261392	4.5833538404494	4.68438579883368	0.30028946361507	0.389380501743323	0.689702992001691
Merged-chr7-133048283-4	chr7	133048143	133048343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	-32996.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	5.83526255207749	5.36839277893611	6.09340703649751	6.01240945920369	5.9847262490152	5.72236714689963	6.06214237337337	5.87877111794672	0.096957662906624	0.729806336296501	0.892804127302382
Merged-chr7-127708849-4	chr7	127708738	127708938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009746)	promoter-TSS (NM_009746)	-72.0	NM_001347652	12055.0	Mm.89667	NM_009746	ENSMUSG00000030814	Bcl7c	C230096E12Rik	B cell CLL/lymphoma 7C	protein-coding	7.25686400237916	7.42210312236572	7.13515331069453	7.02607189933656	7.28779635321011	7.55642318248242	7.39027871008243	6.66731619726355	0.0691860556941815	0.768921577436753	0.909546796961655
Merged-chr13-67844306-4	chr13	67844217	67844417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11587.0	NM_001309373	102637366.0	Mm.121460	NM_001015506	ENSMUSG00000058246	Gm10037	EG328280|Rslcan24	predicted gene 10037	protein-coding	6.09238693108684	6.35049898908197	5.84420886103278	6.17997281908137	6.799740927844	6.93956665550759	6.89141326735587	6.42567419391208	0.938624205479517	8.8434011378667e-05	0.001832001194721
Merged-chr16-23983391-2	chr16	23983291	23983491	+	924.5833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_009744, intron 1 of 9)	CpG	-2108.0	NM_001348026	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	2.8634369233718	2.94849550961124	2.93144605992797	2.65796231482453	2.96954444098791	3.04292765724278	3.15894641393199	3.46282325042603	1.35744492582732	0.025090414031887	0.148763896740998
Merged-chr6-17811226-4	chr6	17811147	17811347	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	RLTR40|LTR|ERVK	62077.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	5.01237316367362	5.04672047799887	5.04724826218187	5.34806233350455	4.8698428425664	5.04293061324448	5.39178145449069	4.70378763881487	-0.213146119929371	0.535248401820668	0.789648104016425
Merged-chr2-129307745-2	chr2	129307645	129307845	+	768.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040371)	TTS (NR_040371)	2227.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	2.93760336502459	2.67013688702366	2.76336119132399	2.5871456342489	2.56960379724613	2.80694589977005	2.48122306755216	2.88076777506031	-0.234507769058037	0.729936889287137	0.892824063905503
Merged-chr2-59161700-6	chr2	59161539	59161739	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001178)	promoter-TSS (NM_001001178)	789.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	5.01843081246701	4.82533373663812	5.68129193466045	5.11611977587362	4.90991049696804	4.75017513179905	5.21622607637263	5.05021216146542	-0.385906747766755	0.282705473817577	0.594870751791803
Merged-chr9-54734558-4	chr9	54734451	54734651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023191)	promoter-TSS (NM_023191)	-2.0	NM_001025375	66317.0	Mm.28437	NM_023191	ENSMUSG00000061559	Wdr61	2700038L12Rik|2810418I05Rik|REC14	WD repeat domain 61	protein-coding	7.8578773473074	7.94735567891887	7.8591879398906	7.79247473343936	8.14727867491457	7.99844642209158	8.0908297653459	8.09332094220728	0.289148058645383	0.0642891531708422	0.269435038569791
Merged-chr17-80731272-4	chr17	80731178	80731378	+	987.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3253.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	6.00139615685929	5.18946236844269	5.74001172501015	5.96596986114607	5.7880396173867	5.52297293482147	5.7582613436825	5.5809621351668	-0.159396184357606	0.598620924656693	0.825987886019831
Merged-chr14-31017822-5	chr14	31017763	31017963	+	830.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153547, exon 2 of 15)	exon (NM_153547, exon 2 of 15)	1268.0	NM_153547	30877.0	Mm.88512	NM_153547	ENSMUSG00000042354	Gnl3	Ns	guanine nucleotide binding protein-like 3 (nucleolar)	protein-coding	3.11644206779975	2.65536677552412	3.05824650534852	2.71464927813706	3.03702185539128	3.04380681980328	3.04643244005938	3.37327024976201	0.987825961853325	0.115183748406181	0.375505100872834
Merged-chr1-34821606-4	chr1	34821523	34821723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 3 of 6)	L1ME2|LINE|L1	19901.0	NM_183019	226970.0	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	6.05972719079192	6.07101333417271	6.40595621194313	6.18042088041758	5.97535336736631	5.93277408593617	6.0707246053335	5.66823436472284	-0.409336967297868	0.0982673286491541	0.343696633380086
Merged-chr11-69073550-4	chr11	69073448	69073648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_028566)	TTS (NR_028566)	122.0	NR_028566	100216530.0	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA	6.53474481214525	6.97377498447221	6.69155214646053	6.36578171988169	6.4715877516484	6.6272093713233	6.70039622277612	6.48054535378057	-0.11905544589566	0.611004987430422	0.832119468101215
Merged-chr1-172522716-4	chr1	172522592	172522792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027972, intron 1 of 11)	intron (NM_027972, intron 1 of 11)	1562.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	5.64458001739477	5.81873038676351	5.36566060003934	5.89337373281404	6.21950428024461	6.32147534606873	6.18895985135835	5.8237709950942	0.694000312179213	0.0107780092028306	0.083378754162404
Merged-chr6-97461911-4	chr6	97461811	97462011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	MLT1A|LTR|ERVL-MaLR	-2625.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.78675161952883	8.32520699861672	8.17835673252707	7.56047097060024	7.96150050930426	8.09325574384384	7.91942413365628	7.3867932339974	-0.164225728411102	0.48676152733452	0.7603696580653
Merged-chr9-21592846-4	chr9	21592747	21592947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138303)	promoter-TSS (NM_138303)	-16.0	NM_138303	74766.0	Mm.475712	NM_138303	ENSMUSG00000032182	Yipf2	1300010K09Rik	Yip1 domain family, member 2	protein-coding	7.47384039509429	7.61453709058174	6.89210118350703	7.43207367612941	7.16945024406512	7.21755165475555	7.01709252252601	6.99642633926251	-0.380699788356876	0.0773257174671427	0.300748815442531
Merged-chr6-115697923-4	chr6	115697807	115698007	+	959.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21272.0	NM_029780	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	5.33028672313594	5.22618852726384	4.87857440365698	4.96743933923356	5.30001580759662	5.05532574973109	4.77640412162581	5.12149852291928	-0.0375839285997781	0.909504347746444	0.966320459266825
Merged-chr10-13969179-4	chr10	13969080	13969280	+	851.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	2801.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	3.80545412430027	4.69960490769285	4.02875817104692	3.69945539337445	4.30684414511974	4.25480020946798	4.36460452143543	3.97410777350724	0.273867836291469	0.580298435799998	0.815718435955212
Merged-chr2-69613497-4	chr2	69613397	69613597	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27430.0	NM_001081088	14725.0	Mm.23847	NM_001081088	ENSMUSG00000027070	Lrp2	AI315343|AW536255|D230004K18Rik|Gp330|Megalin|b2b1625.2Clo	low density lipoprotein receptor-related protein 2	protein-coding	5.68795838468364	5.83679118928228	6.1281723719353	5.63696783698921	5.96495285368557	6.01219005349468	5.76049358424742	5.4866257442581	0.000803605974634826	0.997698886623706	0.999032258328017
Merged-chr5-120526447-4	chr5	120526346	120526546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 11 of 13)	intron (NM_001177595, intron 11 of 13)	15254.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	5.02622292660548	5.60699718683634	5.48779474397234	5.67564108642897	5.99453725055047	5.35487914256403	5.2191358915382	5.39823396903349	0.106357310411034	0.753387942521438	0.902798885097597
Merged-chr12-87472332-4	chr12	87472233	87472433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025507)	promoter-TSS (NM_025507)	-34.0	NM_025507	66354.0	Mm.271174	NM_025507	ENSMUSG00000021039	Snw1	2310008B08Rik|AW048543|NCoA-62|SKIP|Skiip	SNW domain containing 1	protein-coding	6.65479295455121	6.82138767270536	6.08416963009419	6.6628101857437	6.9307366946521	6.68698740135785	6.77960455711247	6.83615593104364	0.317965346070775	0.173242896181123	0.467220322400386
Merged-chr13-112769966-1	chr13	112769866	112770066	+	688.5	f0_balb.idr	Intergenic	ID_B1|SINE|B4	-30811.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	2.6474897078164	2.50008703575782	2.64785233403807	2.84561992966441	2.32730601060173	2.56177889372294	2.23347094200061	2.23692101543735	-1.97853910018013	0.0155411296792298	0.107544436072127
Merged-chr2-34741974-4	chr2	34741870	34742070	+	935.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151469, intron 2 of 26)	intron (NR_151469, intron 2 of 26)	13262.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	4.34429907892129	4.23667348409761	4.11566757800874	4.25619766001118	4.52944940421077	4.42974564495387	3.99543624051358	4.29958964808144	0.229194635302825	0.568439633542992	0.808665348796528
Merged-chr6-99804404-4	chr6	99804326	99804526	+	807.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78034.0	NM_001037539	50501.0	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	4.53669464607662	4.19929798993377	3.59542754027892	4.43034023229844	4.30438071032156	4.09448749780772	4.20041472228042	4.34528839620715	-0.00356671601617976	0.994009749229645	0.997739983081298
Merged-chr11-76646188-4	chr11	76646067	76646267	+	974.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26303.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	5.39272497475742	5.46609160804828	4.87703445309428	5.31275707354626	5.84773909465693	5.28630972179809	5.15257413103218	5.27120746535283	0.268010891845757	0.4243231235079	0.716115696324185
Merged-chr4-144980953-4	chr4	144980864	144981064	+	991.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 68 of 69)	intron (NM_001276465, intron 68 of 69)	87827.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	5.34219434966781	5.93951703751823	5.27791560454068	5.56105986385998	5.73207938515132	5.96598701339619	5.11214384753661	5.43131706741491	0.0658437369144576	0.842959546592489	0.940323698985438
Merged-chr8-40894104-1	chr8	40894004	40894204	+	596.0	f0_c57.idr	intron (NM_007514, intron 1 of 11)	intron (NM_007514, intron 1 of 11)	31737.0	NM_001044740	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	2.72703096287334	2.66263224557525	2.80253067209985	2.82195315518339	3.27866845754542	3.35342144003568	3.11444315811784	3.38479439353901	2.1753719905875	0.000521597007095951	0.00798596544807113
Merged-chr1-152288108-4	chr1	152288020	152288220	+	889.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E3|LTR|ERVL-MaLR	98562.0	NM_025677	66637.0	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	4.11927987798993	4.49197695081972	4.06956057936668	4.43227855151036	4.29906193982954	4.29337423175923	4.15098991326178	4.3854115612736	-0.0492370596091497	0.902851112122458	0.963956578622192
Merged-chr1-194977288-5	chr1	194977225	194977425	+	889.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033564)	promoter-TSS (NR_033564)	-366.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	3.84461565024829	3.79961535220623	4.30232539079281	4.02800655748993	4.03512974598179	4.0731480497439	3.88316018163435	4.17895545417732	0.102279342966209	0.815169927212839	0.928710624683246
Merged-chr2-136937019-4	chr2	136936919	136937119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	37668.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	7.65663114092488	7.63913151384436	7.79094696000708	7.69523562694701	7.56178616453454	7.64858346972875	7.20414876645364	7.33485627537839	-0.323314425391821	0.0779597242112089	0.301965290193835
Merged-chr13-9738314-3	chr13	9738214	9738414	+	856.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347474, intron 1 of 14)	intron (NM_001347474, intron 1 of 14)	25496.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	3.78882940840853	3.84023886558867	3.51959068709794	4.00193460514892	3.63615173709885	3.43998969712762	3.90979016201277	3.51784542413425	-0.513040210443168	0.308424605195214	0.620793493346942
Merged-chr10-25434592-4	chr10	25434494	25434694	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	26226.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	4.86080995782412	4.77610140797555	4.61931254521533	4.59745598033251	4.49825495515313	4.49661478801147	4.25232740769372	4.16410697159718	-0.779126656359575	0.0389489195879575	0.198257069406355
Merged-chr6-50144862-3	chr6	50144760	50144960	+	737.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361248, intron 2 of 13)	ORR1F|LTR|ERVL-MaLR	34000.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	4.34427218949147	4.08379580365206	4.0815255363181	4.68425512413879	3.86783865133806	4.20650947081237	3.85560225817932	4.02948809292477	-0.896279313149069	0.0469794421039119	0.222885403553579
Merged-chr11-116195458-4	chr11	116195393	116195593	+	947.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271898, intron 2 of 13)	intron (NM_001271898, intron 2 of 13)	-3362.0	NM_027107	69535.0	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	5.06511831093916	4.86086688860168	4.60218914239892	5.17397962899632	4.79956020683375	4.81994045652672	4.53807661664014	4.46369295946244	-0.59379909303	0.102127581693351	0.350811863834884
Merged-chr6-145830350-4	chr6	145830273	145830473	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21990.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	6.30408861786143	6.63630825413074	6.65730681769542	6.80848189354477	6.14089145268606	5.4409861646369	6.25423654336263	6.03456358983289	-0.917522710553411	0.000732624057125698	0.0104987815103986
Merged-chr1-34851765-4	chr1	34851688	34851888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145516, intron 1 of 7)	intron (NM_145516, intron 1 of 7)	1799.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	5.97353876387084	5.8668829430912	5.83549614227785	5.98683594139618	6.17059969151457	6.01136712285536	6.02867969862325	6.03458567792144	0.229464175605572	0.329696861465172	0.641048210834502
Merged-chr15-102963874-2	chr15	102963774	102963974	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2922.0	NM_010462	209448.0	Mm.31665	NM_010462	ENSMUSG00000022484	Hoxc10	AI506621|Hox-3.6	homeobox C10	protein-coding	3.56270599095979	3.4988508876484	3.17634557292592	3.05325322067258	3.29208129648609	3.41314594543546	3.28674711472809	3.29741449301258	-0.0340467872718138	0.951157416798822	0.982590255294816
Merged-chr1-77741493-4	chr1	77741397	77741597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20A|LTR|ERVK	-226409.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	6.61370238252138	6.51370851367052	6.94776470792776	7.67126219637123	7.03882179151697	6.98559108904105	7.59887276540077	7.30930762906175	0.294185386841796	0.325848643008065	0.637396409823871
Merged-chr7-80180027-4	chr7	80179989	80180189	+	878.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6752.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	3.9936685851638	3.79262843729289	3.50688806819093	4.03709432147709	4.4252273439784	4.11912155225753	4.47384598841359	4.34703427766398	1.24266523240534	0.00652418430863676	0.0577665026625769
Merged-chr5-141014394-4	chr5	141014296	141014496	+	996.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13800.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	5.16454871389555	4.95815216729465	4.62985085710428	4.95480222394205	5.21294661384103	5.17383517635233	5.25830996728287	5.4410032014511	0.626247080017456	0.0457183413469435	0.219251337068641
Merged-chr16-32795365-4	chr16	32795262	32795462	+	830.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145874, intron 1 of 3)	intron (NM_001145874, intron 1 of 3)	2073.0	NM_146071	224116.0	Mm.153301	NM_146071	ENSMUSG00000035638	Muc20	BC026367	mucin 20	protein-coding	3.62564606905405	3.7174054886789	3.57009300273249	3.74826048497776	3.92334569310951	3.84961318476353	3.55687453625239	3.56824487037232	0.205204312159476	0.666905187794749	0.862176741670962
Merged-chr15-64040954-4	chr15	64040853	64041053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	18811.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	7.57942997684836	7.86507126668205	7.74577273013374	7.7948980374149	7.42870575215166	7.55748978686838	7.41417550789688	7.40610592846703	-0.402129993860396	0.0192075465878067	0.12445492268752
Merged-chr5-43290045-3	chr5	43289972	43290172	+	894.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175937)	TTS (NM_175937)	-54718.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	3.77249742788103	3.86222579722143	3.95727319098403	3.72221478780409	3.39401872493875	3.34395484198777	3.35918777692397	4.03737872399581	-0.802743294938228	0.135069400094378	0.409163077385102
Merged-chr7-4427451-4	chr7	4427372	4427572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001290409, exon 6 of 6)	3' UTR (NM_001290409, exon 6 of 6)	18185.0	NM_175372	108841.0	Mm.413106	NM_175372	ENSMUSG00000008435	Rdh13	8430425D21Rik	retinol dehydrogenase 13 (all-trans and 9-cis)	protein-coding	6.0660659010261	6.22952434740001	5.5808400887462	5.90349855542353	6.61925379862528	6.03761239789015	6.36881875818115	6.14516184044012	0.546675932052611	0.043472106959682	0.212131565735569
Merged-chr13-52277385-4	chr13	52277288	52277488	+	922.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	180647.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	4.90060231161113	5.24841055373733	5.32720715844698	5.54290139547654	4.71359524608731	4.8734588714682	5.24398094091943	5.17624517328003	-0.521529197598729	0.128622037379351	0.399048782433028
Merged-chr13-30085201-4	chr13	30085093	30085293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51297.0	NM_153546	218121.0	Mm.89682	NM_153546	ENSMUSG00000038732	Mboat1	9130215M02Rik|BC023845|LPEAT1|Moact1|Oact1	membrane bound O-acyltransferase domain containing 1	protein-coding	5.76342115259002	5.57267484178673	5.07082554066982	5.46690266615069	5.31300526912803	5.6106161245563	5.64330433386702	5.402784935968	0.00266098307884693	0.992922937191086	0.997455796658417
Merged-chr18-61632509-4	chr18	61632421	61632621	+	985.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7132.0	NR_045420	545261.0	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	5.38120607603717	5.18492733481834	5.4905255932137	5.14608858521162	5.48375803993558	5.37495132298846	5.00114109760074	5.34977955679246	0.0477550578458799	0.875088896629701	0.953041794654062
Merged-chr18-66458581-4	chr18	66458481	66458681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021451)	promoter-TSS (NM_021451)	-23.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	7.99701094828123	8.62167721690361	7.9768195764043	8.00394857667224	8.47149637287283	8.43233598537958	8.48482845618791	8.35450620981362	0.32470378330021	0.09900481886202	0.344970824445845
Merged-chr9-56118698-4	chr9	56118575	56118775	+	834.71875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 3 of 14)	intron (NM_011193, intron 3 of 14)	28699.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	3.95512849361646	4.1710291716509	3.66030277614649	3.8706949012639	4.34483986932534	4.53026909863722	4.13401977190256	4.19474446290519	0.976117376356066	0.0227117116390021	0.139241231411416
Merged-chr3-142395711-4	chr3	142395613	142395813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190855)	promoter-TSS (NM_001190855)	-17.0	NM_019808	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	8.5447132060214	8.85017222746191	8.46126726157361	8.56838685218228	8.92223402392542	8.70415225278086	8.7791605350343	8.4913934313166	0.152443019853831	0.374860854482307	0.677970849710238
Merged-chr14-65098147-4	chr14	65098032	65098232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018788)	promoter-TSS (NM_018788)	-26.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	6.88222674017737	7.01497454931751	6.64977380722132	6.66361185942444	6.93066326195864	7.17393941861412	6.61587685927861	6.980803833025	0.184092286598229	0.401373004800485	0.698995133800492
Merged-chr4-118425629-4	chr4	118425558	118425758	+	945.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2435.0	NM_001039175	54325.0	Mm.282096	NM_019422	ENSMUSG00000006390	Elovl1	AA407424|BB151133|Ssc1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	protein-coding	4.25679166101823	4.39480094882273	4.52039773628778	4.06261615656866	4.38016709791406	4.48093452150121	4.5753109405556	4.76777103651832	0.580550040171609	0.133732507939959	0.407157970086759
Merged-chr1-180813657-4	chr1	180813552	180813752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008210)	promoter-TSS (NM_008210)	-47.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	8.18078119193529	8.29229448458071	8.18812860424871	7.73545469792023	8.2342413376311	8.36582199951777	8.16132442461898	8.2751169981525	0.195491908460686	0.287981802597643	0.599909680363683
Merged-chr15-75929826-4	chr15	75929733	75929933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031201)	promoter-TSS (NM_031201)	-15.0	NM_001357005	22122.0	Mm.22596	NM_031201	ENSMUSG00000022570	Tsta3	AI256181|FX|Tstap35b	tissue specific transplantation antigen P35B	protein-coding	6.0113756958448	5.78877110455378	5.77070523327621	6.16372922011385	6.02985610728456	6.37107590768754	6.18347466694503	6.38535735151561	0.436354468114577	0.0850955195051922	0.317503484974581
Merged-chr15-93294682-4	chr15	93294582	93294782	+	880.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024189, intron 2 of 3)	Lx7|LINE|L1	-19503.0	NM_001346785	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	4.40701114878987	4.41407592595393	4.57521450527293	4.86346740098389	4.36283126768533	4.49144358780013	4.7676638618034	4.31241482329873	-0.231729063768829	0.553733217587864	0.800354486026964
Merged-chr12-106010195-4	chr12	106010111	106010311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011705)	promoter-TSS (NM_011705)	-52.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	8.8159659705188	8.73814875430066	8.69073688164518	8.80151654192898	8.4510202989651	8.60631910978234	8.68500148286281	8.31236319657068	-0.305848177436282	0.0496846521183426	0.230797092810253
Merged-chr10-95817592-4	chr10	95817483	95817683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-123080.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	6.46204494259287	6.38195990299268	6.72751665477787	7.10829927040749	6.13815291710203	6.32998817297837	6.51335460828356	6.65063357388537	-0.43820699962464	0.0965054894942686	0.340377689262619
Merged-chr16-24629418-4	chr16	24629326	24629526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-92429.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	8.18846432571324	8.28757708323685	7.86778957749534	7.88638965989688	7.70200701354253	7.81195256033206	7.69850736429306	7.37466858344964	-0.53349018972989	0.00562688479960995	0.051840025000186
Merged-chr13-65176352-4	chr13	65176242	65176442	+	870.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175290)	TTS (NM_175290)	24116.0	NM_146819	258816.0	Mm.377705	NM_146819	ENSMUSG00000049806	Olfr466	MOR209-1	olfactory receptor 466	protein-coding	3.62203994731767	3.94621005934693	3.68693686316003	4.04477124856453	4.14596546804123	4.28623491032464	4.26540684794685	4.39690026570208	1.08221967138641	0.0163454257714259	0.111516444070193
Merged-chr13-37678148-4	chr13	37678051	37678251	+	921.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147887.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.47680729695713	4.60737833617022	4.04970729901988	4.5968662534747	4.53993869514341	4.33502216609087	4.33077252305329	4.47464455236452	-0.0804099975680282	0.838427158897182	0.938708717941683
Merged-chr2-13544499-4	chr2	13544412	13544612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010067, intron 1 of 10)	GC_rich|Low_complexity|Low_complexity	152.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	7.443519971852	7.01802583723106	7.69636859750688	7.20992656431744	7.00315289180333	6.93585362879441	7.37975981162683	7.58003422081427	-0.149321701176262	0.532521321031066	0.788179391355352
Merged-chr4-108780132-3	chr4	108780015	108780215	+	891.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347163, intron 1 of 18)	CpG	973.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	3.39311238279671	3.55434610922671	4.21256660082109	3.71633049834619	3.63901018939073	3.57583544035787	3.72936004955313	3.88829274124455	-0.121075349913372	0.816277502134684	0.929287083544371
Merged-chr19-29385127-4	chr19	29385022	29385222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 6 of 6)	intron (NM_021893, intron 6 of 6)	17684.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	6.83559236531362	7.39373460085337	7.09528250015654	6.64034142065016	7.06894965791354	7.31762964818712	7.11639373795607	6.80292786870306	0.0989201023488414	0.680842726489139	0.868956507598538
Merged-chr8-45452861-4	chr8	45452771	45452971	+	790.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-42252.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	4.23521033405872	4.57092682461918	4.18835909404136	4.24186644166846	4.25093882166877	4.21316977759445	4.21744877651074	4.59539260594173	0.0248463314447763	0.950437701111044	0.982264362614525
Merged-chr14-19419374-4	chr14	19419305	19419505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	183182.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	6.22390873990155	5.66889089870339	6.54237111995795	6.31864641424216	6.05489175386694	6.07990394102875	5.98813387597655	6.44597626673146	-0.111553276914899	0.690242336507524	0.873785324867519
Merged-chr10-17629920-4	chr10	17629822	17630022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93306.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	5.7829794826419	5.83110790145471	5.92154332843599	6.01590192325536	5.82682078898386	5.50306489991077	5.97477378565874	5.54092433693949	-0.269196859039791	0.310091839050132	0.622220477877522
Merged-chr3-137848551-4	chr3	137848444	137848644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15943.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	7.24647792728063	6.82913881235108	7.2880364739516	7.09311270943253	6.98217142993405	7.01678030169944	6.60626304163053	6.89016785801289	-0.326773637006947	0.124555528759762	0.391884975827738
Merged-chr11-120784663-2	chr11	120784563	120784763	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009053)	promoter-TSS (NM_009053)	148.0	NM_145370	209318.0	Mm.30195	NM_145370	ENSMUSG00000025156	Gps1	Cops1|Csn1|R75577|Sgn1	G protein pathway suppressor 1	protein-coding	3.45549945653052	3.43485202824043	3.76396551777325	3.37789518597506	3.52496344099788	3.51128208457372	3.55268843616518	3.66715315687622	0.189028564165891	0.702725097477155	0.880373386414042
Merged-chr2-127339133-3	chr2	127339060	127339260	+	764.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010090)	TTS (NM_010090)	521.0	NM_172539	215095.0	Mm.31313	NM_172539	ENSMUSG00000050468	Astl	7420700F21|C87576|Sas1b	astacin-like metalloendopeptidase (M12 family)	protein-coding	3.62870213131492	3.96161899933511	3.62921707436379	3.06834374190851	3.98949793566401	3.74915209347043	3.44313957771473	3.51424616130456	0.254386156467562	0.657265595092923	0.857139073910686
Merged-chr4-123941101-4	chr4	123941002	123941202	+	819.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23669.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	3.78437733720356	4.24098662015044	3.95564752214815	3.56709822394735	4.34762451171811	4.28127727954097	4.22304938901386	4.47386005860387	1.12294237435694	0.0111508695250907	0.0852349379216532
Merged-chr6-47920660-4	chr6	47920584	47920784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001145881, exon 1 of 5)	5' UTR (NM_001145881, exon 1 of 5)	116.0	NM_001145881	232784.0	Mm.196782	NM_145576	ENSMUSG00000052763	Zfp212	Znf212|mKIAA3011	Zinc finger protein 212	protein-coding	6.44092229554535	6.44752653329864	7.00453665596785	6.55671952453657	5.9356032571865	6.33654294331622	5.9939656934085	6.27518561362656	-0.732886037563958	0.00363227010117869	0.0371200794733378
Merged-chr7-97842937-4	chr7	97842858	97843058	+	952.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011035)	promoter-TSS (NM_011035)	19.0	NM_011035	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	4.995535192327	4.91327102815786	4.85567640154916	4.32214537587227	4.67169873758568	5.29431667426987	5.09733975875044	4.99294322624138	0.488109006685897	0.193426531538738	0.493656512318064
Merged-chr4-121014756-4	chr4	121014653	121014853	+	899.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	2494.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	4.40037569764938	3.97499958749693	3.80850131905174	4.46098847596617	4.72898533431266	4.16179072963262	4.29957579270971	4.0346656230656	0.345538353812996	0.464238630995887	0.745287689550157
Merged-chr6-72753037-4	chr6	72752945	72753145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	36000.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	6.44363589895307	6.3104731264346	6.63921474905229	6.95892755940173	6.30926494283424	6.32910568989831	6.70574392017873	6.58864743078595	-0.199292069850088	0.426710828737286	0.718119164882168
Merged-chr14-76690452-4	chr14	76690356	76690556	+	909.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12888.0	NR_015485	73272.0	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	4.83034946294615	4.29583875904585	4.83116168702713	5.09589237862957	4.42629183191804	4.46931624620838	4.70220181550571	4.56429998842833	-0.57178911580811	0.142653950886111	0.420400459998864
Merged-chr6-30303316-3	chr6	30303194	30303394	+	932.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009459, intron 1 of 6)	intron (NM_009459, intron 1 of 6)	1245.0	NM_009459	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	3.34201430492148	3.5550639424709	3.51166751292064	3.53187776171211	3.44576236036851	3.25867868120408	3.33067208977577	3.7047999529165	-0.146139663912749	0.777912358787104	0.91346294604842
Merged-chr6-115469458-4	chr6	115469357	115469557	+	862.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 6 of 7)	intron (NM_001308354, intron 6 of 7)	47391.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	4.78366493323382	4.71663984828442	4.47943011385387	4.83035190114472	4.59779159499419	4.31873909662362	4.45933816046665	4.38756610950042	-0.585213530879089	0.110271344038477	0.366691625977182
Merged-chr5-115155977-4	chr5	115155865	115156065	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175403, intron 1 of 4)	intron (NM_175403, intron 1 of 4)	2211.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	5.41429930809343	5.35036107367948	4.80077871424381	5.32958494061923	5.26570869207383	5.21644175126488	5.33309482156853	5.32753837227772	0.0596830279193863	0.846370611383448	0.941927981530162
Merged-chr17-17392972-4	chr17	17392879	17393079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025934, intron 9 of 9)	ID_B1|SINE|B4	-9707.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	5.3392032271076	5.68593417367015	5.10767199078098	5.00007043780398	5.47522804600183	5.57395859420308	5.65471070548143	5.36639864766951	0.386786611706038	0.215101329143751	0.521064304956133
Merged-chr13-116951549-4	chr13	116951456	116951656	+	966.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	73960.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	5.60433970902724	5.74042574115103	5.00750767959694	4.56103069817909	6.88603242422154	6.6936322493255	5.87653673960253	5.6567479141037	1.6683562519072	0.00548730407808363	0.0508900087262429
Merged-chr8-122438161-4	chr8	122438063	122438263	+	986.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028354, intron 5 of 10)	intron (NR_028354, intron 5 of 10)	-5223.0	NM_007806	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	5.36680128203665	5.74981097596448	5.45350465842543	5.72666826748168	5.16882170988378	5.1729768937229	5.28091214202903	5.23993290980614	-0.683577990237849	0.0178486125501006	0.118533904898639
Merged-chr6-119479329-4	chr6	119479223	119479423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133940)	promoter-TSS (NM_133940)	-345.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	6.83793845562433	7.09972756178831	7.67644519261678	7.12207537722666	6.65832078125585	6.97331742609292	6.78999061567354	7.18296143686233	-0.423585704870534	0.0854363538932251	0.318241364475685
Merged-chr10-84441263-4	chr10	84441142	84441342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004363)	promoter-TSS (NM_001004363)	-771.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	5.34923511164282	5.52186662970043	5.23105423766392	4.74419631337925	5.35381459202441	5.20584027651952	5.17382506912675	5.28832422646131	0.0619357650845454	0.853078588057736	0.944678751070911
Merged-chr2-5130316-4	chr2	5130215	5130415	+	815.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7461.0	NM_028804	74186.0	Mm.274715	NM_028804	ENSMUSG00000026676	Ccdc3	2310045O21Rik	coiled-coil domain containing 3	protein-coding	3.98474946153805	3.91869400206981	4.08390827678166	3.62790852470198	4.11477692228119	4.16082777261487	4.39471773232011	4.29879159264747	0.919247781040836	0.0315194459767126	0.173076001507588
Merged-chr8-11555376-4	chr8	11555280	11555480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302458)	promoter-TSS (NM_001302458)	-382.0	NM_001302458	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	8.33015778297282	8.16192546094441	7.96991159598384	8.03930160636342	8.13448065501021	8.43165420536697	8.25484799335511	7.992596951384	0.104168935520669	0.556355104999363	0.801927828333191
Merged-chr6-116668894-2	chr6	116668794	116668994	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	intron (NM_178045, intron 1 of 10)	4942.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	4.96282940557716	5.31081333466311	4.60675488114918	4.00145860961834	4.95250681793974	5.54565740560315	5.15952406388312	4.60377255513776	0.571332669258391	0.209980004916861	0.514484230514723
Merged-chr6-17598685-4	chr6	17598601	17598801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38309.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	6.2264217246975	6.23791520961877	6.04052223361417	5.73644445656917	6.62373553304378	6.26176114321901	6.70819382154529	5.96727383963998	0.554570736325661	0.0432761874963322	0.211650113357251
Merged-chr12-81860244-4	chr12	81860147	81860347	+	968.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_018814, exon 1 of 36)	5' UTR (NM_018814, exon 1 of 36)	217.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	4.23016635047424	4.35668361815915	4.08286787277779	4.22930135850755	4.45547111629055	4.53391734115189	4.11681357123313	4.44203387977327	0.400162998717971	0.304518107153458	0.617066911687048
Merged-chr16-30066508-4	chr16	30066399	30066599	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008235, intron 3 of 3)	CpG	1142.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	4.34632776702675	4.76782292265184	4.93614187747945	5.03249296665178	4.60585284368552	4.37290082653718	4.42332850716306	4.83490013478706	-0.498328234515165	0.199600897137587	0.501474545095065
Merged-chr19-23758358-4	chr19	23758265	23758465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177034)	promoter-TSS (NM_177034)	-511.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	6.11831499219069	6.49067580526586	6.11939441387174	6.30380045262363	6.23608531897129	6.61508042448341	6.40725735252104	6.27608518985405	0.165441210629816	0.481446774794359	0.756621478033376
Merged-chr6-134079772-4	chr6	134079651	134079851	+	859.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	44051.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	3.73636178477434	3.93496439030967	3.85223896712547	3.88080871135838	4.40759122878427	4.44108904465456	4.03895587024398	3.95613302898427	0.984692981695536	0.0230729502608741	0.140644816872378
Merged-chr11-98026668-3	chr11	98026574	98026774	+	976.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159483)	promoter-TSS (NM_001159483)	-36.0	NM_001159483	19921.0	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	4.83806227870384	5.09832274935763	4.42786054895062	4.73798037213967	5.30776445635502	5.54645562002752	4.92769312359574	5.17820767596764	0.881357498396631	0.0116698875305564	0.0881046801588323
Merged-chr11-113173014-1	chr11	113172914	113173114	+	834.599976	f0_c57.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	28824.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	2.8241130284503	2.74826644103253	2.82439069629998	2.30079547721908	4.08053700566392	3.59412383270908	3.84232451208466	4.19672048759709	7.8454329479922	1.39074794391988e-15	2.45637835980827e-13
Merged-chr17-35394047-3	chr17	35393938	35394138	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_051981)	promoter-TSS (NR_051981)	-61.0	NR_051981	15016.0	Mm.439648	NR_051981	ENSMUSG00000055413	H2-Q5	H-2Q5|Qa-5|Qa5|Qat-5	histocompatibility 2, Q region locus 5	pseudo	3.49110268095247	3.36145735238997	3.40803162926526	2.45499510671018	5.54673091379145	5.44250032061071	4.89160463839555	4.9152854763675	7.95357306751287	1.2021522450207e-21	4.91770084185795e-19
Merged-chr8-119558853-4	chr8	119558759	119558959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019709)	promoter-TSS (NM_019709)	-98.0	NM_019709	56453.0	Mm.206934	NM_019709	ENSMUSG00000031835	Mbtps1	0610038M03Rik|AV003995|S1P|SKI-1|Ski1|mKIAA0091	membrane-bound transcription factor peptidase, site 1	protein-coding	7.87167933686649	7.87426186989276	7.18239009600219	7.44218918857907	8.0429519752489	8.30026529814225	8.04776989811886	7.73753315716873	0.549744740373113	0.0128201817697814	0.0942012716208603
Merged-chr6-87543504-4	chr6	87543426	87543626	+	850.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-10267.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	3.52543662760565	3.48569169715626	3.2948666929347	3.52415889815394	3.45884521203638	3.52950534049679	3.34475375462651	3.67317477283434	0.131326673920906	0.794121235782275	0.920358789920322
Merged-chr10-81338780-3	chr10	81338684	81338884	+	970.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148951, intron 4 of 5)	RSINE1|SINE|B4	4482.0	NM_148951	209047.0	Mm.218755	NM_148951	ENSMUSG00000034872	Gipc3	Ahl5|Rgs19ip3	GIPC PDZ domain containing family, member 3	protein-coding	4.2077429070627	4.18183296575551	3.91685801935135	4.27812241598921	4.02496554978539	3.98262092243694	4.05361856485791	4.36830914350952	-0.12271865018204	0.77103572073033	0.910353175958998
Merged-chr18-46536763-4	chr18	46536619	46536819	+	916.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-10748.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	3.59565919334674	3.8197703862115	3.900078563456	3.94888918873165	3.8097720641302	3.38745422055083	3.63799161380574	3.75497773213714	-0.494681053239322	0.312450446701661	0.624435937381445
Merged-chr17-57357803-4	chr17	57357719	57357919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355723)	promoter-TSS (NM_001355723)	-867.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	5.22153556981492	5.44645189068882	5.0517877219171	4.95280881010946	5.21759162304893	5.51749064632588	5.50449852910154	5.3405008380991	0.405223614662928	0.185571995636971	0.483538788206757
Merged-chr2-167770530-2	chr2	167770430	167770630	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79353.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	3.1311918542671	3.39275746699438	3.31874300599728	3.19304881148041	3.48008757584362	3.54519599781329	3.24768467830022	3.48039365259915	0.648971585568402	0.212712933266489	0.517670706102327
Merged-chr13-95944056-3	chr13	95943948	95944148	+	983.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52126.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.50964802987576	3.55479794806031	3.79452632492806	4.07948953010914	3.562446856716	3.6900051558188	4.20333419742914	3.89058769107907	0.255287749392816	0.625616802840673	0.839997329134293
Merged-chr12-55230703-4	chr12	55230602	55230802	+	765.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001100109, intron 1 of 15).2	CpG	224.0	NM_001100110	100101806.0	Mm.471968	NM_001100110	ENSMUSG00000079108	Srp54c	E330029E12Rik	signal recognition particle 54C	protein-coding	4.25737644096106	4.38292580470116	4.38141402992552	3.37988612723808	4.5416051979274	4.24951576080057	3.89844354948838	3.96691462418121	0.0690048980701976	0.89610785073017	0.960994089571403
Merged-chr6-119388456-2	chr6	119388356	119388556	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	CpG	278.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	5.10105995488726	4.67743734379992	4.73143116469885	4.89438703501449	5.18471232906683	5.274855377349	5.01131000897812	5.40985081307066	0.697665033190542	0.0293871187156519	0.165009950423055
Merged-chr4-126259173-2	chr4	126259073	126259273	+	992.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-2854.0	NM_001145970	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	2.27045000330574	2.27314358210202	2.19349702005177	2.06248003927563	2.29630235769051	2.52078614279642	2.700942680071	2.60033340206089	2.06609703312839	0.00604878074776132	0.0546098843753499
Merged-chr7-16257454-3	chr7	16257341	16257541	+	917.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	B2_Mm2|SINE|B2	1897.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	3.79010046466428	4.23780186453175	3.84621275422277	3.25005188927249	4.23411585417661	4.46986268499758	3.71803050062652	3.99777445421152	0.801378116742973	0.13503350737095	0.409089168808549
Merged-chr8-105374812-4	chr8	105374735	105374935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081333)	promoter-TSS (NM_001081333)	-546.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	5.91311688775384	6.16918167234493	5.96059072198485	5.81019260680086	6.06277679976538	6.04310079642632	6.30034478300061	6.29395853695524	0.336834406641748	0.165099361772107	0.455629942291284
Merged-chr14-106681434-4	chr14	106681334	106681534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-194914.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	7.4998037206355	7.47738311336594	7.30244097738356	7.860507549853	7.40097362603758	7.44721924477276	7.46404810925271	7.25356917829595	-0.229415741025784	0.249317683744878	0.560328612484111
Merged-chr11-114929292-3	chr11	114929213	114929413	+	712.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199221, intron 1 of 3)	MTEa|LTR|ERVL-MaLR	5073.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	3.12817621263359	2.81317584057525	2.85511631060199	2.91721720432564	2.77088436184405	2.76226040877761	2.78327724979279	2.58394104414027	-0.959577159174651	0.139781552698815	0.415775252617132
Merged-chr15-9071149-4	chr15	9071067	9071267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286255)	promoter-TSS (NM_001286255)	-93.0	NM_001286255	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	8.97095471521291	9.09462114719998	8.91223090282354	9.02415237574452	9.23190934819187	9.23886454660502	9.38481875407451	9.01706194359508	0.27381592453326	0.0665727355097026	0.275003234916437
Merged-chr11-76202026-4	chr11	76201918	76202118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027773)	promoter-TSS (NM_027773)	-38.0	NM_027773	116972.0	Mm.188413	NM_027773	ENSMUSG00000069808	Fam57a	2310047D13Rik|4932415L08Rik|5430402E13Rik|5430420K21Rik|Wdt3	family with sequence similarity 57, member A	protein-coding	6.01296806346584	6.29805825526784	5.78082043342212	6.13117407762399	5.95276295676089	5.76726303463107	6.16061380367411	5.7245321713964	-0.25299342026072	0.333427336578797	0.644183931120519
Merged-chr13-54303245-6	chr13	54303121	54303321	+	962.522217	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-68128.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	4.76443331551842	4.41473858229688	4.44613395672022	4.08927761790131	4.56969642812775	4.82761360990264	4.74203208625385	4.89561136791283	0.720904402322352	0.0596838989930106	0.257593999904409
Merged-chr12-118301373-4	chr12	118301288	118301488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009239)	promoter-TSS (NM_009239)	52.0	NM_009239	20688.0	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	8.27617878394475	8.34203355126785	8.53910676527288	8.39638007718862	8.07336542233544	8.25111299469273	8.66786450296969	8.00602671504359	-0.148310626528945	0.443380880695071	0.72990713266033
Merged-chr9-98329775-4	chr9	98329663	98329863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357445, intron 1 of 3)	intron (NM_001357445, intron 1 of 3)	33193.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	5.30495843096535	5.49742528648479	5.14751728355734	5.87774587779378	4.85465847475654	5.25548078544137	5.01792893950149	5.1439978206062	-0.806815610392994	0.0155373827924801	0.107539811187296
Merged-chr6-83906845-4	chr6	83906745	83906945	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-7508.0	NM_001166371	18139.0	Mm.132392	NM_008717	ENSMUSG00000030016	Zfp638	AI323587|Np220|Zfml|Znf638|mNP220	zinc finger protein 638	protein-coding	5.01372488361842	5.45106955393078	5.01455548322853	4.98836343107672	5.09008452680707	5.35955866568078	5.25170363545035	5.46671197189603	0.302698122990535	0.336167881110296	0.646244323954596
Merged-chr2-91265155-4	chr2	91265068	91265268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166024)	promoter-TSS (NM_001166024)	53.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	8.92730159253591	9.09758537787839	8.97542437632248	8.83798672023277	8.74710493888575	8.87351148057555	8.8478546243476	8.51510504842943	-0.259122656465389	0.099946131725185	0.346773858643283
Merged-chr15-74919736-3	chr15	74919663	74919863	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35288.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	3.86136120298113	4.15135653458662	3.91447105807102	3.43681011037935	4.18239300244122	4.3604823574223	3.89797253701428	3.91216464156922	0.661801216940783	0.169589823922476	0.462269140925131
Merged-chr3-108383704-4	chr3	108383579	108383779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040560)	promoter-TSS (NR_040560)	62.0	NR_040560	100038453.0	Mm.214328	NR_040560	ENSMUSG00000074281	Gm12522	-	predicted gene 12522	ncRNA	5.60566037533445	5.93460891198089	5.60664436698081	5.38440056060884	5.04796398753331	5.64755318595717	5.44498680186432	5.3188094282701	-0.468714083240916	0.129443615497987	0.400360889731452
Merged-chr8-123021933-3	chr8	123021819	123022019	+	809.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	20365.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	3.70494068922133	3.55923764557158	3.3036451642889	3.62045746171419	3.33509148551483	3.92139066840906	3.63984346674308	3.60064113781516	0.238383968118188	0.644856695246626	0.850540242207308
Merged-chr5-25101372-4	chr5	25101275	25101475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145401)	promoter-TSS (NM_145401)	400.0	NR_027851	67261.0	Mm.461781	NM_026059	ENSMUSG00000043833	2900005J15Rik	-	RIKEN cDNA 2900005J15 gene	ncRNA	7.05715832713636	7.12752482422268	7.03583261560998	7.37274570855962	5.98238747409592	6.10647030114648	6.41882567691673	6.27331943302958	-1.39541417359499	3.91819802403272e-10	2.71561263050268e-08
Merged-chr5-115635706-4	chr5	115635600	115635800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198163, intron 1 of 5)	intron (NM_198163, intron 1 of 5)	3713.0	NM_198163	77407.0	Mm.27553	NM_198163	ENSMUSG00000029518	Rab35	9530019H02Rik|AU040256|H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding	6.89586919968114	6.82541205318001	6.77724765777173	7.00362359346044	6.27173674897665	6.70830190610741	6.79718002750009	6.28380263899305	-0.509599516480298	0.0253032015700164	0.149766253881397
Merged-chr8-40609912-3	chr8	40609779	40609979	+	831.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001040699, intron 1 of 13)	B3A|SINE|B2	24913.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	3.8824315655047	3.80692373311765	4.38008275550879	4.02457755145059	5.71524909671387	5.45019674990893	5.48993593380869	5.37469421666412	3.04598384499681	4.46434291612608e-15	7.35572834321615e-13
Merged-chr8-108387353-4	chr8	108387247	108387447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	197330.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	6.1277186159475	6.03283118497765	6.22595571586928	6.33934963503725	6.12577278704746	5.82280482019037	6.33459596571259	5.92825592613349	-0.188448508323124	0.448585534266019	0.733856919708496
Merged-chr7-132620180-4	chr7	132620069	132620269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 1 of 6)	intron (NM_029609, intron 1 of 6)	9526.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	6.41741875087884	6.28976618924149	6.50560428735712	6.64216922367773	6.83516141521789	6.15077267889552	6.94133918286116	6.73074124658628	0.3280209303606	0.185614451792487	0.483574244399563
Merged-chr15-30616558-3	chr15	30616492	30616692	+	794.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-422534.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	3.73933474292781	3.7090802618772	3.4205746750228	3.51531638357132	3.65399441802498	3.53504542063704	3.28376977968334	3.68972456130449	-0.145544690835292	0.773951492868214	0.911669791582544
Merged-chr6-100150963-3	chr6	100150870	100151070	+	825.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136388.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	3.5946372645391	3.70151718636682	3.80783772897619	3.64954218968783	3.7075140642167	3.65289139242492	3.63741632515644	4.10835340148452	0.305609843616238	0.517334670418314	0.778803651723338
Merged-chr5-100585691-2	chr5	100585591	100585791	+	868.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-13486.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	3.10434388804184	2.88455319244652	3.15826011463003	2.55986188289486	2.90809881356492	2.83573512760882	2.97912281868731	2.92810984989832	-0.117128405551072	0.858028390304984	0.946496029407037
Merged-chr2-25054440-4	chr2	25054327	25054527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020276)	promoter-TSS (NM_020276)	48.0	NM_001177655	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	6.54861364416164	6.65230142438228	6.56620064672881	6.54299296888846	6.65251232125728	6.72630951843673	6.92072756384367	6.57772687010374	0.210580833416399	0.306394516408282	0.618868909266093
Merged-chr2-52523290-4	chr2	52523216	52523416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	MLT1B|LTR|ERVL-MaLR	35295.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	7.02186312464346	7.19145101602987	7.58627976043686	7.43588984420211	7.15432199779657	7.0385919385122	7.00024110830465	6.89834014114554	-0.409858641076293	0.0480606912774365	0.226205907851395
Merged-chr14-20640201-3	chr14	20640093	20640293	+	699.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16347.0	NM_021508	59011.0	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	2.98872917022526	3.12867662240888	2.98909223921503	3.05286110261288	2.93140167184682	3.15657724643134	2.85394998150873	2.86128341867769	-0.378924231765213	0.522626750887475	0.781990067507927
Merged-chr4-126819477-4	chr4	126819385	126819585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035525, intron 5 of 23)	intron (NM_001035525, intron 5 of 23)	65715.0	NM_001035526	100317.0	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	5.17439877448304	5.67617815098709	5.6771867843712	5.43805512070379	5.45358321818207	5.64063249968471	5.43787354789695	5.87515470104025	0.176484374375163	0.545765618058855	0.795980881235375
Merged-chr3-116638147-4	chr3	116638027	116638227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008246, intron 8 of 11)	intron (NM_008246, intron 8 of 11)	-23540.0	NM_030016	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	6.24923373046745	6.17417273001375	6.30372126745092	6.41687582138219	6.02829948631711	5.80910933186481	5.81683949858762	5.8671104523937	-0.629368861576421	0.0081196862040254	0.0678824458910411
Merged-chr11-102230202-4	chr11	102230085	102230285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284250)	promoter-TSS (NM_001284250)	-13.0	NM_001284250	15184.0	Mm.22665	NM_010412	ENSMUSG00000008855	Hdac5	AI426555|Hdac4|mHDA1|mKIAA0600	histone deacetylase 5	protein-coding	6.85919394139686	6.65671808119175	6.34998427150717	6.3547845922134	6.94744537370725	7.03630643309619	6.35595927923182	7.04929131078553	0.44381118188896	0.0762388634083297	0.298263009064823
Merged-chr4-149144608-4	chr4	149144484	149144684	+	915.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6984.0	NM_027263	69928.0	Mm.260893	NM_027263	ENSMUSG00000073705	Cenps	2610040C18Rik|2810407L01Rik|Apitd1|CENP-S	centromere protein S	protein-coding	4.29515760804278	4.60048462017396	4.09509439465064	4.35599615635728	4.55185861645472	4.37606590894067	4.73532793862231	4.2931889462567	0.344799408555335	0.379977176752882	0.682455538949141
Merged-chr4-41740986-4	chr4	41740881	41741081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286605, intron 1 of 3)	CpG-9828	378.0	NM_001286540	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	6.46074207046445	6.56930119491039	6.41091271344585	6.50021737330604	6.30756448037749	5.98045114754211	6.72261150197613	6.11525068966779	-0.254315440511592	0.304126458928454	0.616776598391914
Merged-chr8-70901227-1	chr8	70901127	70901327	+	589.0	f0_c57.idr	Intergenic	RSINE1|SINE|B4	-3784.0	NM_029751	76808.0	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding	2.26749998336726	2.21427092062838	2.18440667440461	2.00396273195798	2.89256167853273	2.60260005316574	2.54935434971395	2.95160391834844	4.21770026008099	9.74137462510478e-07	3.42072671159513e-05
Merged-chr6-134095875-3	chr6	134095750	134095950	+	725.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	60150.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	3.44896618919548	3.12042387653022	3.59468542081811	3.48108105940993	3.3097659393761	3.2084945893375	2.87352087997485	3.39515375054183	-0.759535451095489	0.206942977072711	0.511014541719289
Merged-chr10-118981610-4	chr10	118981494	118981694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54451.0	NR_110482	216377.0	Mm.208936	NR_110482	ENSMUSG00000112854	Gm38403	C230029M16	predicted gene, 38403	ncRNA	7.25996468174821	7.40538998108004	7.18215645238286	7.23255788649951	7.66245131871025	7.76469198757042	7.68014516267229	7.2451681760761	0.444175072572691	0.0210215390977396	0.132406582852884
Merged-chr13-117237346-4	chr13	117237240	117237440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010330, intron 2 of 8)	intron (NM_010330, intron 2 of 8)	16767.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	6.39597445873478	6.64525623823165	6.7917947384104	6.92319755512206	6.09014331771772	6.08291361531968	6.48277993457851	6.15817389470477	-0.743001091188926	0.00197373356220285	0.023179076262009
Merged-chr5-96164111-6	chr5	96163935	96164135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2045.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	5.42798604056163	5.53642382935541	4.98904748461306	5.41201627870699	5.26829216990583	5.16642068169469	4.88883383592131	5.12746701325853	-0.435908879157772	0.165367581406143	0.456002323608105
Merged-chr7-43309261-2	chr7	43309161	43309361	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027264, intron 2 of 4)	intron (NM_027264, intron 2 of 4)	4039.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	3.23807934869998	3.06541701822184	3.01429743858037	2.87470441173742	2.98761351513882	2.84968604450216	3.11895647219503	3.07253614156203	-0.14499140600509	0.807085010842907	0.925602255486785
Merged-chr17-23960562-4	chr17	23960445	23960645	+	958.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5272.0	NM_001077421	638345.0	Mm.46428	NM_001077421	ENSMUSG00000024125	Sbpl	2310068J22Rik	spermine binding protein-like	protein-coding	4.91169644217597	5.01905092429595	4.58004270945383	5.07354380293092	5.00073344637019	5.25569979291921	5.15079531654107	5.01465383598626	0.34611315097206	0.291963960429031	0.604435540090105
Merged-chr13-45889152-3	chr13	45889051	45889251	+	927.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	(CA)n|Simple_repeat|Simple_repeat	75840.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	3.9057840703089	4.01182496030945	3.75741256842975	3.85116811776421	3.72711978752105	3.51120989021282	3.9349273038024	3.75531095842155	-0.417127632340162	0.367383310108734	0.671821411731311
Merged-chr11-49201270-3	chr11	49201171	49201371	+	900.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2229.0	NM_001024846	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	3.85201233348032	3.65496345448922	3.70909594196197	3.70084977819561	3.88139879488065	3.26116082102068	3.58964162108572	3.65536191007872	-0.313040880004141	0.540105604864951	0.792532713133553
Merged-chr4-132505475-4	chr4	132505381	132505581	+	963.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144907, intron 1 of 9)	intron (NM_144907, intron 1 of 9)	4975.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	4.93329769703258	4.78167294072044	5.53591381233451	5.02391145531537	5.14449765909659	4.91540831804564	4.91052504006083	5.10222755797162	-0.127358276564294	0.711413224486478	0.884405406929924
Merged-chr8-25840765-4	chr8	25840680	25840880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011791)	promoter-TSS (NM_011791)	7.0	NM_001359012	23808.0	Mm.27706	NM_011791	ENSMUSG00000031575	Ash2l	-	ASH2 like histone lysine methyltransferase complex subunit	protein-coding	6.69720926123556	6.35391333919689	6.09048784760881	6.37794851251377	6.52254956403084	6.88747948307364	6.59154779711377	6.42608390852577	0.318171147213053	0.181950369003417	0.478622466288266
Merged-chr19-43959342-4	chr19	43959227	43959427	+	896.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030703, intron 8 of 8)	intron (NM_030703, intron 8 of 8)	-19129.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	3.7817818365141	3.91786529048552	3.49988042155382	3.63163731659772	3.90489181324019	3.73778205577977	3.9953718758599	3.67451777768237	0.362241804448257	0.438720214780026	0.726714904652614
Merged-chr17-84380533-2	chr17	84380433	84380633	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	RSINE1|SINE|B4	85675.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	2.83688411143392	2.80351966310762	2.90187267259197	2.50090141276853	2.81110246423047	3.13531147466834	3.06555063266881	3.020666717906	1.12786177755204	0.0760000038015392	0.297838946738032
Merged-chr3-154817920-2	chr3	154817820	154818020	+	704.083313	f1_balb.idr|f1_c57bl6.idr	intron (NM_177066, intron 23 of 24)	intron (NM_177066, intron 23 of 24)	106787.0	NM_175176	209601.0	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	2.85935824344503	2.95970560919902	2.93084979922524	2.75778982562235	3.09863212360239	3.35528401221408	3.42656682020057	3.34320467425054	1.77111271611308	0.00196959913167656	0.0231553200799755
Merged-chr11-22982246-4	chr11	22982120	22982320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144514)	promoter-TSS (NM_144514)	64.0	NM_144514	17846.0	Mm.259903	NM_144514	ENSMUSG00000051355	Commd1	AI256843|Murr1|U2/Mu	COMM domain containing 1	protein-coding	7.34803710836591	7.62680610396784	7.60943474018521	7.66576398505779	7.26619964084647	7.61605271185155	7.20533824379302	7.19064194984257	-0.32892502732038	0.0881260889869064	0.323887379976197
Merged-chr18-5834624-4	chr18	5834532	5834732	+	918.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	241985.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	4.80720222193253	4.35750424607034	4.63026991549749	4.36640050916656	4.62575315899726	4.72402141343082	4.53047465522218	4.37513531714752	0.0702127171701877	0.851433847100615	0.943990806896802
Merged-chr17-33685467-4	chr17	33685365	33685565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029804)	promoter-TSS (NM_029804)	-7.0	NM_029804	76936.0	Mm.311439	NM_029804	ENSMUSG00000059208	Hnrnpm	2610023M21Rik|AA409009|Hnrpm|mKIAA4193	heterogeneous nuclear ribonucleoprotein M	protein-coding	7.28731747122066	7.46129528806175	6.83698321460841	7.04559363873176	7.44025756883946	7.45501063208216	7.32361007947378	7.47814692019447	0.334701670006049	0.100887637459901	0.348630019747465
Merged-chr1-72963597-1	chr1	72963497	72963697	+	879.0	f0_balb.idr	Intergenic	Intergenic	52302.0	NM_009407	21958.0	Mm.425024	NM_009407	ENSMUSG00000026182	Tnp1	Stp-1|TP1|Tp-1	transition protein 1	protein-coding	3.39041825568479	3.38833110806641	3.90919654012725	3.65265465772853	2.74239582044268	2.90953145298308	2.8688257997354	2.87548874698679	-3.7103273855219	3.21747403566285e-06	0.000100269958136798
Merged-chr15-97825194-4	chr15	97825091	97825291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	6576.0	NM_019572	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	7.4478864092585	7.10629213106757	7.08738891086755	7.01955681528591	7.38401462051493	7.26436577829184	7.09857236933308	6.64232513173053	-0.0511618127587439	0.824118841171139	0.932482704694281
Merged-chr6-17508746-1	chr6	17508646	17508846	+	898.25	f0_balb.idr	intron (NM_008591, intron 3 of 21)	intron (NM_008591, intron 3 of 21)	44789.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	3.16831919796362	3.55808940046744	3.52898125614547	3.52285544913385	2.84600296608883	2.78058560351288	2.74875819350564	3.04276464354278	-2.70763718494506	0.00011574717880985	0.00229172974701149
Merged-chr16-10992245-4	chr16	10992150	10992350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	871.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	8.00012282656973	8.51701416944061	8.1886841076435	8.01346702425521	8.05655230795562	8.29860259004951	8.32803648464115	8.05059559329806	-0.0104634808428974	0.955707927643357	0.984292813605202
Merged-chr1-132316061-4	chr1	132315919	132316119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028778)	promoter-TSS (NM_028778)	-106.0	NM_001195025	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	7.02199430849503	7.33315772466766	7.13162459878439	6.91909323225295	7.09659717340064	7.2732942729871	7.26737826846526	6.92702426998924	0.0578146344796374	0.776220099554782	0.912825193156936
Merged-chr5-25011289-4	chr5	25011210	25011410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 3 of 15)	intron (NM_145401, intron 3 of 15)	-15557.0	NM_001310480	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	5.62466046013053	5.69204554357172	5.28989567834879	5.74153426833567	6.00679465721661	5.90330771774095	5.72409290930877	5.81998082503143	0.426501055675805	0.1111001323722	0.368241970762321
Merged-chr9-39910141-4	chr9	39910036	39910236	+	943.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146613, exon 1 of 1)	exon (NM_146613, exon 1 of 1)	331.0	NM_146613	258606.0	Mm.377588	NM_146613	ENSMUSG00000095390	Olfr229	MOR171-14|Olfr229-ps1|Olfr973|Olfr973-ps1	olfactory receptor 229	protein-coding	4.61134808481981	4.82769469585338	4.65568030974175	4.8291553848993	5.23627203608878	4.91451850094544	4.86706139714812	5.17355914336102	0.637093055500516	0.0540320593996793	0.242661868635862
Merged-chr5-21645858-4	chr5	21645755	21645955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177076)	promoter-TSS (NM_177076)	-129.0	NM_026034	67211.0	Mm.260782	NM_026034	ENSMUSG00000038525	Armc10	2810037C14Rik|Svh	armadillo repeat containing 10	protein-coding	7.85560245530347	8.03453750932581	8.01943922279219	7.69858425494912	7.79787574630339	8.07162620181357	8.15361122353085	8.07861314040155	0.16148928264689	0.366770508591297	0.671175337334839
Merged-chr18-39653042-4	chr18	39652938	39653138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120459.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	6.49867025522193	7.10959149347339	6.43138596750785	6.16830084459558	6.72584113398236	6.39988402200843	6.54672593914177	6.08625629621841	-0.190029660247241	0.50826681991556	0.773396125844835
Merged-chr9-114870268-3	chr9	114870114	114870314	+	895.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-26062.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	3.98736586543109	3.73777888095495	3.94736294280406	3.87083745560243	3.41623080764982	3.21364213638608	3.23936236605588	3.44431496698717	-1.86066265197418	0.000536930118047733	0.00817567677971692
Merged-chr1-121440802-4	chr1	121440693	121440893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029955, intron 3 of 23)	MTD|LTR|ERVL-MaLR	9726.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	6.73167500447156	6.51685763519833	7.06406799945379	7.14933384539141	6.21118808806391	5.98410851755604	6.51813971877035	6.25659164092405	-0.93170686144808	0.000209570219224113	0.00378394278912948
Merged-chr17-87246027-4	chr17	87245934	87246134	+	893.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19913.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	4.33263877128724	4.0694047327826	4.64444990793765	5.05417950223305	4.13267634909945	3.78451236237295	4.17579568333906	4.41565745200414	-1.05053705358869	0.0288561656894915	0.16320643763308
Merged-chr19-46528778-6	chr19	46528625	46528825	+	963.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27077.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	4.84812269160341	4.77786913023743	5.09556138261984	4.86883537399931	4.36820194550258	4.7179554309979	4.38572093310149	4.40220036483088	-0.935358030885708	0.00905413180922963	0.0734348277175428
Merged-chr13-94286336-3	chr13	94286280	94286480	+	797.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346609)	promoter-TSS (NM_001346609)	-549.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	3.25118790021199	3.13769060209027	3.69803464212969	2.98631884260368	3.18364620900179	3.10197357304978	3.35128800657869	3.36325211843801	-0.126414377976905	0.830568302535893	0.93499882818844
Merged-chr11-117830063-4	chr11	117829952	117830152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027827, intron 2 of 10)	intron (NM_027827, intron 2 of 10)	-4038.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	6.98948840450713	7.50777148268738	7.45254268676957	7.0565216338719	7.2365212056734	7.19383807795345	7.22231405588277	6.48233211942995	-0.266792922565101	0.279523719453369	0.591517173100493
Merged-chr18-31918739-6	chr18	31918593	31918793	+	968.4097289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6790.0	NM_026006	67158.0	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	3.55978502798639	3.4917006382107	4.22310592077525	3.49186449259212	3.614523505941	4.1046680199893	3.86955541321263	3.83537235855762	0.404180905993725	0.436846660619198	0.725337058576227
Merged-chr10-71353903-3	chr10	71353809	71354009	+	972.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	intron (NM_027184, intron 1 of 5)	6146.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	4.39022405118866	3.8293021591971	5.27572088902332	5.31210924769477	4.23982842319276	3.8526080415072	4.02346608622835	3.85629504180049	-1.96078977807035	0.012945370052181	0.0947397177610727
Merged-chr11-116621451-4	chr11	116621370	116621570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	2782.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	6.85736608935839	7.5119259879131	6.99435115218739	6.5443366337305	7.56406300570209	7.24650519066605	7.15991675854037	7.00220438797699	0.332610698645843	0.201510680052737	0.503928914572383
Merged-chr11-63046555-4	chr11	63046443	63046643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15116.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	8.55913804516998	8.54629504396285	8.18825988552611	8.31294261954903	8.51023455555544	8.67620932726007	8.59782322481338	8.4928478713352	0.202344133787243	0.2145319783273	0.520353182806768
Merged-chr6-25798408-4	chr6	25798296	25798496	+	856.8624880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133931, intron 3 of 17)	intron (NM_133931, intron 3 of 17)	10830.0	NM_133931	101185.0	Mm.274589	NM_133931	ENSMUSG00000029676	Pot1a	1500031H18Rik|AI851169|Pot1	protection of telomeres 1A	protein-coding	3.97124775103083	4.15068686720209	4.65418079325874	3.96858497919931	3.94611339149981	4.14879881903282	4.14980996314276	4.07135083808187	-0.333260599808324	0.45603119283076	0.739437212266054
Merged-chr13-115958568-4	chr13	115958453	115958653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	351135.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	6.53527365515744	6.50234905316677	6.86310225804137	7.18949752800182	6.41073822360938	6.10417220283142	6.27321734998572	6.17855643323446	-0.825342773355881	0.00121623560906146	0.0157229267013051
Merged-chr8-69996526-4	chr8	69996426	69996626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145596)	promoter-TSS (NM_145596)	-142.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	9.34620810435412	9.53152287501068	9.67781401033173	9.50554554557639	9.4679301981299	9.74259077325597	9.71217593745379	9.58740040946972	0.134240610030124	0.366184763633331	0.670756926059822
Merged-chr7-19749773-4	chr7	19749678	19749878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159724)	promoter-TSS (NM_001159724)	-205.0	NM_001159724	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	7.7540251031762	8.00848412882847	7.61294013755096	7.3533171249766	7.79843654055793	8.00200686850544	7.95416132228808	7.63404829131508	0.203921208755124	0.319724164503603	0.631580384031367
Merged-chr15-66708739-4	chr15	66708621	66708821	+	967.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 22 of 47)	MIRc|SINE|MIR	37951.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	4.83649563341528	4.59197251797271	4.87343374727432	4.97919614790728	4.96575670501368	4.85697930121668	4.85017688238594	4.90528056576239	0.121308665305959	0.713195388908006	0.88527884500467
Merged-chr10-80548941-4	chr10	80548838	80549038	+	725.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025852, intron 2 of 14)	intron (NM_025852, intron 2 of 14)	-9814.0	NM_026094	67331.0	Mm.52511	NM_026094	ENSMUSG00000003341	Atp8b3	1700042F02Rik|1700056N23Rik|ATPIK|SAPLT	ATPase, class I, type 8B, member 3	protein-coding	3.67694187681709	3.63138170168745	3.62309166696254	3.74248889520681	3.5044428059272	3.68375782066285	3.5529843708302	4.11909592364877	0.186422135994807	0.705777073012286	0.881821802733794
Merged-chr11-3194798-4	chr11	3194684	3194884	+	948.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1321.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	4.70387547619924	3.90645806899943	4.87551067213509	4.4768565597667	4.21853249668648	4.84050406973025	4.39900613138905	4.96430668550657	0.225643449713698	0.622846784029551	0.83876213183819
Merged-chr7-67374131-4	chr7	67374012	67374212	+	924.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1254.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	4.85165983221543	4.50272741762109	4.85246686088838	4.80526940402947	4.8995625076175	4.71510257899659	4.51832547007441	4.88346211892266	0.0182437010097261	0.958250086143249	0.985113418665911
Merged-chr6-28482389-4	chr6	28482292	28482492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	intron (NM_019776, intron 1 of 23)	2044.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	5.66887575625308	6.62098112596136	5.81084686532783	5.49805932941164	6.61250729823732	6.71827948419383	6.47936199889986	6.21513536271567	0.816359248420371	0.0103367471262274	0.0808704466583577
Merged-chr8-84662886-4	chr8	84662763	84662963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010499)	promoter-TSS (NM_010499)	-11.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	7.51819651336002	7.77039073623135	7.59314511082752	7.39148357937529	7.91251429534372	8.07803213680263	7.77600017650771	7.72335720991001	0.40544509778121	0.0268634602489282	0.155780738349564
Merged-chr8-68927137-2	chr8	68927048	68927248	+	590.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	46593.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	2.99701830527523	2.59414008156919	2.66634800533508	2.32508315129247	2.95671802215375	3.11198325861609	3.14783107014187	2.99570077353893	1.82035452336128	0.00997281935735754	0.0787852729231246
Merged-chr1-154786397-4	chr1	154786300	154786500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60480.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	5.84228398828525	5.75980249990139	5.26266334845487	5.76083458650733	5.65150842592451	5.97135746146852	5.48828221069509	5.56818513895184	-0.00445618769178044	0.987641119913557	0.995315979319888
Merged-chr7-101548374-3	chr7	101548258	101548458	+	943.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	7444.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	4.33839582713265	4.8612165797047	4.13325238606766	3.66300111282065	4.91198103465049	4.95164754560217	4.65130133741609	4.42838809253246	0.939291583534472	0.0459235681272856	0.219951558351491
Merged-chr16-62940787-4	chr16	62940693	62940893	+	990.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86486.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	4.38044250993381	4.71314076585274	4.76418708926717	5.01523738420479	4.90033512464716	4.40787023869438	4.70460978911445	4.90011682939807	-0.00978268081669439	0.979449982340168	0.99269129061727
Merged-chr17-47754371-4	chr17	47754275	47754475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	16444.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	7.73766550413653	7.75739887800596	7.67430942612966	7.65008693093675	7.89700968068667	7.71141053040752	7.5243643349952	7.37090259082996	-0.0719205724596662	0.70021148041546	0.879054781621322
Merged-chr10-117856387-4	chr10	117856271	117856471	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10397.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	5.59108446596105	4.80201497526973	5.22428635043561	5.41235226713854	5.05238762123035	5.01439053530542	4.81211893527857	5.337141263024	-0.417428141682739	0.227315922676261	0.535996291786981
Merged-chr16-90743864-4	chr16	90743753	90743953	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029844, intron 1 of 2)	intron (NM_029844, intron 1 of 2)	5529.0	NM_029844	77037.0	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|C21ORF61|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	5.82678720137747	4.69282103023229	5.82783942927088	5.68602347013157	4.79484231202334	4.73216086890753	5.07403189404411	5.26017235114783	-1.09396626066954	0.00503455547951773	0.047794705687915
Merged-chr10-94381204-4	chr10	94381103	94381303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	69254.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	7.06442433142028	7.35355832771336	7.16839379404036	7.09425145291824	6.95858413936455	6.96461244331695	6.94418390071154	6.5552191325537	-0.420109308693246	0.0400366799527118	0.201897421392383
Merged-chr12-36214522-3	chr12	36214426	36214626	+	905.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361098, intron 5 of 8)	intron (NM_001361098, intron 5 of 8)	3692.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	3.81041199782045	3.9684904654747	4.07759791700562	4.27047981658287	3.46364425396267	3.30745339774594	3.58268842309471	3.40748478963778	-1.93419323116163	0.00019859271896795	0.00361802691154844
Merged-chr6-34872041-4	chr6	34871951	34872151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347101, exon 4 of 4)	3' UTR (NM_001347101, exon 4 of 4)	6014.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	6.77155131517392	6.42560364091338	6.91645743111404	7.19358297258727	6.45612256524544	6.46789044343971	6.68180292625252	6.17891464530526	-0.58817729817802	0.0198008307920467	0.127236917481908
Merged-chr10-128704683-1	chr10	128704583	128704783	+	1000.0	f0_balb.idr	intron (NM_183417, intron 1 of 7)	CpG	368.0	NM_183417	12566.0	Mm.111326	NM_016756	ENSMUSG00000025358	Cdk2	A630093N05Rik	cyclin-dependent kinase 2	protein-coding	5.37987545839559	5.30348406615476	5.38080698896048	4.99292534347495	5.17800894410486	5.30743968129073	5.23598602053784	5.60900626250789	0.149038447998151	0.627905870694004	0.841356751004848
Merged-chr11-75462475-4	chr11	75462378	75462578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030711, intron 1 of 2)	intron (NR_030711, intron 1 of 2)	939.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	6.14369510289792	6.47896541379095	6.22798738852322	6.04143632102995	6.33626987681206	6.51986191150698	6.48154874852201	6.92829755282314	0.524410128873584	0.0339342011705873	0.181759538349104
Merged-chr7-16387827-4	chr7	16387702	16387902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285892)	promoter-TSS (NM_001285892)	94.0	NM_001285892	56459.0	Mm.258530	NM_019748	ENSMUSG00000052833	Sae1	2400010M20Rik|2610044L12Rik|AL033372|AOS1|AW743391|D7Ertd177e|HSPC140|Sua1|Uble1a	SUMO1 activating enzyme subunit 1	protein-coding	7.14451896828846	7.20857559202657	6.81299066537822	6.8555763044523	7.12998190636814	7.17977149099786	7.08726456875339	6.98542913480953	0.12018430360541	0.548706204950233	0.797622002249573
Merged-chr7-19381935-4	chr7	19381838	19382038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007949)	promoter-TSS (NM_007949)	-101.0	NM_007949	13871.0	Mm.36524	NM_007949	ENSMUSG00000030400	Ercc2	AA407812|AU020867|AW240756|CXPD|Ercc-2|Mhdarco15|RCO015|XPD	excision repair cross-complementing rodent repair deficiency, complementation group 2	protein-coding	7.32858790635883	7.32367881709977	6.7638666301592	6.92469940528835	7.6586807311351	7.41234611471304	7.44512375882469	7.16290509731012	0.449830259435781	0.0414210800844143	0.206103534381581
Merged-chr8-9976428-4	chr8	9976322	9976522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176953)	promoter-TSS (NM_176953)	-99.0	NM_176953	319583.0	Mm.80584	NM_176953	ENSMUSG00000049717	Lig4	5830471N16Rik|tiny	ligase IV, DNA, ATP-dependent	protein-coding	9.08832418227883	9.26447509496246	9.55192771539763	9.34299629063429	9.30218462144327	9.34984093855968	9.61760890014636	9.19840072977974	0.0658309295759436	0.695759660225112	0.876851576599482
Merged-chr11-50916209-4	chr11	50916096	50916296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178447)	promoter-TSS (NM_178447)	-20.0	NM_001294323	22678.0	Mm.259230	NM_009550	ENSMUSG00000049321	Zfp2	9930007F06Rik|Fnp-2|Zfp-2|mKR2|mkr-2|mszf87	zinc finger protein 2	protein-coding	6.70586270715004	6.25207270585945	6.06477376328403	6.54229636068319	6.24617882622807	6.04995002903733	6.57440367568542	6.39620909155827	-0.132986266533521	0.602851077727541	0.827857481943331
Merged-chr18-32441396-3	chr18	32441285	32441485	+	862.6333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63101.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	3.75292031670865	3.88949697705583	3.40753696146877	3.83517556694859	3.78186198924719	3.87229089701492	3.52059449323058	3.75129260270163	-0.0108252355793167	0.982271838392571	0.993659734511288
Merged-chr7-12910369-4	chr7	12910278	12910478	+	965.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11933.0	NM_009095	20103.0	Mm.5291	NM_009095	ENSMUSG00000012848	Rps5	AA617411	ribosomal protein S5	protein-coding	5.44634673769464	4.72502085320469	4.90207946526598	5.46082183753801	5.31651739076771	5.08133855667512	5.49496330053494	5.24655595227866	0.196582812655075	0.572220950808784	0.811143909621735
Merged-chr12-4234148-4	chr12	4234007	4234207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204912)	promoter-TSS (NM_001204912)	80.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	7.06443779627024	7.22096520494546	7.28647468959057	6.98509029876625	6.90958257178624	7.25414719667442	7.03011784468638	7.02392242244684	-0.114802273399132	0.560444539174958	0.804511547928985
Merged-chr1-156455282-3	chr1	156455196	156455396	+	931.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 3 of 15)	ORR1B1|LTR|ERVL-MaLR	19032.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	3.58181142134651	4.00609076776079	4.36776680429754	3.80097371615531	3.32175657655847	3.22694315811404	3.45015978116147	3.33073112575892	-2.09628396593089	0.000225202097810527	0.00401042284714924
Merged-chr6-122340594-4	chr6	122340479	122340679	+	947.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073364)	promoter-TSS (NR_073364)	-352.0	NM_001271579	13619.0	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic 1	protein-coding	5.14407679517821	4.68803194288285	4.65426849691938	5.24236975574796	5.25036588802541	5.00394829102455	4.91750449079721	5.56282125252526	0.44735302545504	0.218815845219948	0.526132251694445
Merged-chr13-67813987-7	chr13	67813882	67814082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198322, intron 1 of 3)	CpG	166.0	NM_198322	212569.0	Mm.358842	NM_198322	ENSMUSG00000030446	Zfp273	6820416H06Rik|Rslcan1	zinc finger protein 273	protein-coding	5.72667851695584	5.77643608814195	5.96196242528444	5.52190459770659	5.87538574646109	5.95385588804871	5.72397803013454	6.22573569640543	0.34660427072618	0.195257709397428	0.496044870624791
Merged-chr1-131138292-4	chr1	131138125	131138325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145508)	promoter-TSS (NM_145508)	9.0	NM_145508	226419.0	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	6.44164026376696	6.38122865830404	6.55429340439656	6.25602430221622	6.6039170300788	6.34102377609752	5.90699434129761	6.13873198645133	-0.176872049817023	0.484435104252502	0.758525197917074
Merged-chr1-65060286-4	chr1	65060194	65060394	+	916.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3146.0	NM_007776	12967.0	Mm.425031	NM_007776	ENSMUSG00000067299	Crygd	Aey4|Cryg-1|DGcry-1|Lop12	crystallin, gamma D	protein-coding	4.16313213628442	4.31805021764878	4.75725482071323	4.79421651471421	4.27305250487242	3.94530234857939	4.28752704339799	4.30395529733193	-0.78834307992852	0.0651359708532541	0.271536086844931
Merged-chr9-37420833-4	chr9	37420732	37420932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164767, intron 17 of 27)	CpG	12343.0	NM_001164767	19649.0	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	8.09390603032151	8.09989329384477	8.26911987999541	8.34752814812231	8.11004238362578	7.71512036157494	8.56163165451442	8.02382224652712	-0.0876840130307655	0.672866783291671	0.865465309599339
Merged-chr14-70057135-4	chr14	70057025	70057225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-20320.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	8.6066615990573	8.76949438346794	8.94073146792371	8.75917379930116	8.60495304172832	8.73815304904205	8.77378630680818	8.68353500813816	-0.093280316137835	0.53755919690205	0.791144778684373
Merged-chr2-131479123-4	chr2	131479004	131479204	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-12758.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	4.3357438225397	4.11655121269876	4.67736343435939	4.22421656442252	4.65272788428596	4.69334923390143	4.85978452885393	4.97249817307146	1.00073605249065	0.00729354851019398	0.0627216974032979
Merged-chr13-52585195-4	chr13	52585040	52585240	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198977, intron 1 of 13)	intron (NM_001198977, intron 1 of 13)	1703.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	4.99698028768136	4.65311088415335	4.73265067870007	4.63488671485196	4.64593342218256	4.52755658363564	4.74622599705825	4.39428078591575	-0.352865106775339	0.324999556939174	0.636488090877592
Merged-chr10-79539116-4	chr10	79539037	79539237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5350.0	NM_001302389	50784.0	Mm.28873	NM_015817	ENSMUSG00000052151	Plpp2	Lpp2|PAP2-G|PAP2-gamma|PAP2c|Ppap2c	phospholipid phosphatase 2	protein-coding	5.59450064129229	5.57948289915042	5.45643561243817	5.97040081378436	5.57574859288772	5.41138610946796	5.66776931396809	5.48166372659573	-0.249458518151557	0.382752051247092	0.684720839179898
Merged-chr12-85349966-3	chr12	85349858	85350058	+	895.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-10596.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	3.85979372267008	3.26302675523283	3.64286123660644	3.55457399198637	3.39664972918404	3.23473220269866	3.18176572917434	3.31826882764235	-1.05521256092948	0.0571469054842772	0.25051792729355
Merged-chr6-17787899-2	chr6	17787799	17787999	+	822.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	L2b|LINE|L2	38729.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	3.23592993364277	3.07064261141728	3.43928810122682	3.13231206519246	3.05242608475572	3.34811441461605	3.10898797094788	2.92416221333724	-0.425660437903973	0.46501574009226	0.745722932051402
Merged-chr6-98531730-1	chr6	98531630	98531830	+	760.0	f0_balb.idr	Intergenic	Intergenic	-188976.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	3.4966252873876	3.36338788818868	3.27508346383154	3.49381800843974	3.15991662704742	3.18967205674203	3.43123838340649	3.54494553648621	-0.271491811562827	0.612799438740622	0.832842328110262
Merged-chr15-97449170-4	chr15	97449067	97449267	+	880.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-201880.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	4.20354865590867	4.27351870851053	4.38295848864582	4.50584336697071	4.30939676696761	4.51065408694957	4.13856210826431	4.38018863941614	-0.0489810302613554	0.900055750542368	0.962950071664741
Merged-chr8-35068473-3	chr8	35068369	35068569	+	987.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-102779.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	4.37247952035748	4.521819553264	4.80364639431674	4.92333802479122	3.89592972452412	3.84982109658776	4.21940738961288	3.97484908400302	-1.72444819847893	6.41034973052583e-05	0.00139493208030907
Merged-chr12-99967278-4	chr12	99967164	99967364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	2765.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	5.61312698564378	5.14828288704226	5.56326456466346	5.90705207937253	5.19392085782527	5.24157873011442	5.39923493757499	5.61012766485943	-0.406806764483718	0.199386330879168	0.501236339736241
Merged-chr13-5837533-4	chr13	5837444	5837644	+	893.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	20548.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	4.43034752850583	4.12480990636195	4.30173908451318	4.12362769093188	4.22084447756313	4.71763890425194	4.56312156838825	4.29905816428145	0.513233294155561	0.196240554629087	0.497236651745317
Merged-chr16-55819025-3	chr16	55818905	55819105	+	723.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159394, exon 3 of 12)	exon (NM_001159394, exon 3 of 12)	3133.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	3.55360071100742	3.13461945681793	3.30272465832024	3.21354943937916	3.27299792674798	3.23465433739215	3.11362892992486	3.184751803853	-0.369283109558749	0.504339127974694	0.770655921364685
Merged-chr13-24447507-4	chr13	24447413	24447613	+	925.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111110, intron 11 of 16)	L1MEf|LINE|L1	32391.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	4.70474224302392	4.63758684915005	4.78129247802624	5.2182930977023	4.62991677557094	4.71550651950945	4.64432059173189	4.70243512166277	-0.437035503619583	0.230183384496086	0.539403164017397
Merged-chr1-91091715-1	chr1	91091615	91091815	+	648.0	f0_balb.idr	intron (NM_008515, intron 9 of 22)	intron (NM_008515, intron 9 of 22)	38271.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	3.2415739721267	3.5577946902278	3.55494484653752	2.94019832440048	3.35693149480202	3.23059919006326	3.10773217978278	2.98085746256835	-0.604724519954582	0.324579190796907	0.636154479217255
Merged-chr3-132744877-4	chr3	132744756	132744956	+	992.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163455, intron 20 of 25)	intron (NM_001163455, intron 20 of 25)	60712.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	5.2285052182919	4.84985388668447	5.1126053920061	5.38658709863067	4.79295729770963	4.41439865577594	4.89043030286971	4.79866939406468	-0.852741772842059	0.0149952782225936	0.104775587376656
Merged-chr4-141646197-4	chr4	141646095	141646295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	17920.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	6.07200905496565	5.89958541172683	5.96427782621027	5.91209191661791	6.28360120858587	6.11735214800107	6.28580106571872	6.08943219395287	0.381844813137419	0.0980053565015678	0.343083817952348
Merged-chr14-63124421-4	chr14	63124316	63124516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	1954.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	5.78798736983289	6.11786781075502	6.25079105538494	6.28561057832279	6.07459628171681	6.09226601252473	6.23696349819891	6.2277817596915	0.0302730153508893	0.901171441777759	0.963342914941175
Merged-chr16-23283187-4	chr16	23283087	23283287	+	723.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	MTB_Mm|LTR|ERVL-MaLR	-7283.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	3.6747091889114	3.85937086875798	3.61627939161811	3.69275249379939	4.00164451024784	3.79413476160866	3.96426803157902	4.18798384032123	0.797392982060576	0.0729721593844556	0.290724579246959
Merged-chr11-50208895-2	chr11	50208795	50208995	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290769, intron 1 of 7)	B3A|SINE|B2	1925.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	3.24519878619757	3.50569481108005	3.18772803800295	2.76161466617	3.27843226325394	3.23971855540609	3.11587051084591	3.06218724695513	-0.0805311887857232	0.89643351165502	0.961123944193462
Merged-chr15-76908302-2	chr15	76908202	76908402	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	4231.0	NM_012053	26961.0	Mm.30066	NM_012053	ENSMUSG00000003970	Rpl8	-	ribosomal protein L8	protein-coding	3.26599188395472	3.23384662603107	3.15490148224391	3.08000311080511	3.0957412977464	3.14230989488096	2.81876715486955	3.26458462182619	-0.361346351342308	0.535476381586617	0.789765706629649
Merged-chr7-128411100-4	chr7	128410930	128411130	+	960.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 1 of 4)	intron (NM_026418, intron 1 of 4)	7142.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	4.42267071594667	4.43821367639198	4.46362962039929	4.04210123352914	4.3511760980116	4.63365869672823	4.18259158409993	4.14864963128555	0.00652483531002888	0.987330190319013	0.995258250959001
Merged-chr1-182413011-3	chr1	182412886	182413086	+	642.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173378, intron 1 of 17)	intron (NM_173378, intron 1 of 17)	3819.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	2.96435772669583	3.14329457574124	3.03097212748696	3.05911023979172	2.99159418664963	3.26673664420951	3.08305694309137	3.50927051236266	0.660810290607019	0.252267882516842	0.563584315159659
Merged-chr3-99141343-4	chr3	99141169	99141369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027462, intron 1 of 5)	CpG	179.0	NM_027462	70560.0	Mm.316754	NM_027462	ENSMUSG00000004233	Wars2	5730427B17Rik|9430020O07Rik|AI413375|TrpRS	tryptophanyl tRNA synthetase 2 (mitochondrial)	protein-coding	7.41024270081378	7.48450252272525	8.21554283076559	7.52266357100689	7.64016758718294	7.88287774858849	7.73914376657748	7.90354401289466	0.124770562680027	0.57820822460581	0.81458069221668
Merged-chr2-36272633-6	chr2	36272520	36272720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42194.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	5.19079172096379	4.51048751637186	4.90438841363193	4.93332979689292	4.84060523150392	5.17964445992132	4.7302249449591	5.03676601400203	0.0964910774388942	0.78397113664934	0.915902595534967
Merged-chr5-114131632-4	chr5	114131529	114131729	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040691, intron 2 of 6)	CpG	473.0	NM_011677	22256.0	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	4.39995018551147	4.56986136839333	4.20706990101761	4.34839752260145	4.46701369893221	4.61903117254545	4.58624124418051	4.90885516640309	0.586684211969315	0.114643981242847	0.374533599886066
Merged-chr2-11280178-9	chr2	11280057	11280257	+	944.552917	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 14 of 17)	intron (NM_008859, intron 14 of 17)	-59332.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	3.75859510249121	3.9839261643159	3.91087759778157	3.59863892282403	3.35997967499829	3.93359094807289	3.93997526373534	4.00036415881625	0.0333116690870919	0.947015056608608	0.981023220226121
Merged-chr1-43472173-4	chr1	43472046	43472246	+	888.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	26395.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	4.46105369414065	4.52689816011037	4.19749437904957	3.91874702306863	4.39129471114443	4.59284537253725	4.02591465369809	4.53593567672719	0.273295943400825	0.525448513106964	0.783252235625498
Merged-chr1-88278302-6	chr1	88278194	88278394	+	983.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198652)	promoter-TSS (NM_198652)	-715.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	4.52748619125196	4.3286322232787	4.3261344201952	3.99908288071381	4.04698568016711	4.41007590381758	4.46902956708869	4.40801517690689	0.10214254559156	0.805119996432118	0.925171083261684
Merged-chr10-57486302-4	chr10	57486197	57486397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045353)	promoter-TSS (NR_045353)	56.0	NR_045353	74928.0	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA	8.38560715789927	8.62311195886275	8.37613078316276	8.46910422609598	8.63304705402112	8.48115476462297	8.96980312171585	8.2022075212536	0.169920763780963	0.382082358939901	0.684238214631303
Merged-chr13-67724322-4	chr13	67724232	67724432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145622, intron 1 of 3)	intron (NM_145622, intron 1 of 3)	4841.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	5.82866454848729	5.74771135653161	5.80470757265753	5.5151716896079	6.43629748365503	6.36708262824143	6.26708198971212	5.85001922323434	0.851794767331276	0.00102816933080689	0.013751077766856
Merged-chr11-53470063-3	chr11	53469965	53470165	+	909.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10130.0	NM_183173	237761.0	Mm.145208	NM_183173	ENSMUSG00000044352	Sowaha	A830006N08Rik|Ankrd43	sosondowah ankyrin repeat domain family member A	protein-coding	3.6667557325705	3.65548971884637	3.25160796514704	3.5474742738304	3.98677221474387	3.5607820613769	3.54751977318535	3.61335751572509	0.493049717032699	0.335816914407676	0.646012598325017
Merged-chr8-61558860-4	chr8	61558748	61558948	+	890.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	32321.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	4.08402627928202	4.43249455690863	3.98030297178518	4.29350166066098	4.5002827201402	4.04739939644784	4.11630121855861	4.35214655505044	0.144671697324308	0.731884514889751	0.893842682027583
Merged-chr18-82847171-4	chr18	82847079	82847279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8718.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	6.31024875068035	6.28474885565423	6.43713292748409	6.56746928854766	6.41391698859021	6.59572887950541	6.73148802980802	5.93699988063227	0.0574898752989976	0.820386953211876	0.931216561407907
Merged-chr11-78346430-2	chr11	78346330	78346530	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313987)	promoter-TSS (NM_001313987)	-280.0	NM_001313986	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	2.86653198560679	2.7110638442389	2.67428440669089	2.59874647489461	2.56724797207515	3.03624002990396	2.79548061864397	2.86535368727769	0.520246382755344	0.422316173618337	0.714626353223175
Merged-chr8-33730830-4	chr8	33730710	33730910	+	992.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1104.0	NM_001167921	68153.0	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	5.27398811877461	4.70713605406813	5.02994738879674	5.01608064324691	5.13556762607673	5.16951220922739	4.70480175595717	5.15481772476814	0.075279816452995	0.822622082538987	0.932143478460956
Merged-chr17-26069511-4	chr17	26069395	26069595	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162868)	promoter-TSS (NM_001162868)	-318.0	NM_001162869	215445.0	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	4.43754189514253	4.73252727566791	4.87437294142872	4.65723956135311	4.30311265087671	4.42995387391971	4.32937757630603	4.24942569163272	-0.817227305637495	0.0287135065464582	0.162735781707966
Merged-chr13-23531731-4	chr13	23531626	23531826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153173)	TTS (NM_153173)	682.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	6.20776106017497	6.42255156913054	6.62398590727258	6.58844414384129	6.75082475350922	6.38779872791232	7.11855745660971	6.55621210253187	0.373963916790851	0.129301511977534	0.400165458021043
Merged-chr2-118490841-4	chr2	118490721	118490921	+	986.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11125.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	4.86153568062988	4.53771880483984	4.4232743757996	4.55104863516039	4.99072749328571	5.0749150594973	5.2734173430041	5.5356752331898	1.25085462645287	0.000262072756700229	0.00453818467620527
Merged-chr8-126592147-4	chr8	126592058	126592258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164598, intron 1 of 1)	intron (NM_001164598, intron 1 of 1)	1278.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	7.2625885725843	7.78363590933056	7.59531196139622	7.89133674476066	7.80076582958122	7.50885043530225	7.7828645748156	7.63345134481076	0.031922519773093	0.87425323416368	0.952841261958902
Merged-chr2-130525664-4	chr2	130525560	130525760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 7 of 21)	intron (NM_001355161, intron 7 of 21)	38089.0	NR_040348	321014.0	Mm.442588	NR_040348	ENSMUSG00000060029	4930473A02Rik	-	RIKEN cDNA 4930473A02 gene	ncRNA	7.20779363268985	7.29001263353117	7.39699371174311	7.02448870761592	6.65104338541223	6.81600974607347	7.0142599871204	6.93073200814281	-0.517470133495506	0.0116016989511065	0.0877201327428096
Merged-chr5-53509727-4	chr5	53509624	53509824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46055.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	7.44226993799298	8.17240565481449	7.89982114790628	7.58946859879371	8.09088261531363	8.17450975898605	8.08508356668604	7.70819744693823	0.286527523480264	0.183881517052905	0.481088822403467
Merged-chr5-127616293-3	chr5	127616196	127616396	+	938.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 1 of 7)	intron (NM_133895, intron 1 of 7)	1096.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	3.8533361469235	3.97366951670797	3.85390040183792	3.795583180777	3.57369715439841	3.76017129524176	3.83758195068165	3.75036513791751	-0.41522457230851	0.360321045903497	0.665793074685122
Merged-chr8-104118072-4	chr8	104117972	104118172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 2 of 11)	ORR1E|LTR|ERVL-MaLR	-12199.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	5.32767415527739	5.2345276285497	5.75927264833343	6.04443282725844	5.69145664057766	5.69641242649385	6.04886318699289	6.11295746530172	0.399453562787381	0.212060232396992	0.516872762448566
Merged-chr2-76367389-4	chr2	76367292	76367492	+	966.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2592.0	NM_153405	241490.0	Mm.33310	NM_153405	ENSMUSG00000042369	Rbm45	Drb1|Drbp1|G430095G15Rik	RNA binding motif protein 45	protein-coding	5.57277932706071	5.87681726674601	5.17317141075752	5.51136213428154	5.79327742542731	5.66689544918968	5.14819038912438	5.59596965840764	0.033741692219939	0.914188675361371	0.967915685778947
Merged-chr9-27000195-4	chr9	27000077	27000277	+	927.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025862)	promoter-TSS (NM_025862)	500.0	NM_001326361	77862.0	Mm.16925	NM_144543	ENSMUSG00000035443	Thyn1	D730042P09Rik|HSPC144|MDS012|MY105|Thy28	thymocyte nuclear protein 1	protein-coding	4.25270681866928	4.50164891798674	4.4816292881851	4.66347187783264	4.48259924813042	4.22096223956328	4.57976345104238	4.83969186775476	0.120310061312741	0.7575670451819	0.90479159536558
Merged-chr13-5803033-4	chr13	5802941	5803141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55051.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	7.41357970401424	7.92465316193593	7.70663540130201	7.47013308697652	7.90111726621783	7.90014167866516	7.85687048317721	7.39941311111993	0.183743662679305	0.374517508692969	0.677830694759353
Merged-chr18-23888080-4	chr18	23887987	23888187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 7 of 7)	intron (NM_001162941, intron 7 of 7)	-66601.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	6.9818917471112	6.38726977709513	7.17846261808606	7.39946817963735	5.35014419363913	6.09203666069404	5.74238656065567	5.61657583740689	-1.99425743990508	2.94224656283351e-11	2.44942886661902e-09
Merged-chr6-128630234-3	chr6	128630144	128630344	+	891.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7310.0	NM_010737	17057.0	Mm.16729	NM_010737	ENSMUSG00000030361	Klrb1a	Ly55a|NKR-P1.7|NKR-P1A|NKRP12|Nkrp1-a|Nkrp1a|ly-55A	killer cell lectin-like receptor subfamily B member 1A	protein-coding	3.65473262699281	3.75858367915259	3.91447181408784	3.75661420544725	3.78833741074396	3.8300300712243	4.02953433751919	3.81470534065651	0.273414783544191	0.538843717747873	0.791823712489696
Merged-chr7-3707223-4	chr7	3707077	3707277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029767)	TTS (NM_029767)	3136.0	NM_029767	76846.0	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	7.55358951871585	7.89221736400087	7.80313488437351	7.53860895786896	7.27433686637871	7.22722348794175	7.57799790318148	7.1083173068321	-0.52267191513833	0.00835218696900909	0.0692084186574037
Merged-chr15-101978683-4	chr15	101978593	101978793	+	970.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24406.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	4.51468028027009	5.05925703667646	4.95608354263157	5.26888565808495	5.22041370790175	4.64894113629024	4.39797878527201	4.98614881820677	-0.249354809631414	0.536201662440176	0.79025795367793
Merged-chr7-17027653-5	chr7	17027534	17027734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011155, intron 1 of 12)	CpG	280.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	6.29396477571308	6.49821588531853	6.56124939902066	6.07896317966423	6.35189695011094	6.87307090987842	6.83641643137076	6.77596167075928	0.521522770407537	0.0323178110513254	0.175993454628423
Merged-chr9-114742896-4	chr9	114742739	114742939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026036, intron 3 of 3)	intron (NM_026036, intron 3 of 3)	11636.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	7.22162992678598	7.41228445467574	6.97889790300576	7.17746929291532	7.34999735358296	7.36627470887363	7.47200665184438	7.32403895254466	0.229449949743253	0.219589809172596	0.527217019204017
Merged-chr7-3693665-4	chr7	3693584	3693784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029934)	promoter-TSS (NM_029934)	74.0	NM_001164205	66078.0	Mm.379100	NM_024168	ENSMUSG00000035585	Tsen34	0610027F08Rik|Leng5	tRNA splicing endonuclease subunit 34	protein-coding	7.68365354406566	7.925215109141	7.59866017266134	7.95110720088866	7.76981933959918	7.50879685252955	7.90897270157929	7.59345353071537	-0.129139280103714	0.490855959952951	0.762545540982874
Merged-chr2-109913376-4	chr2	109913248	109913448	+	734.488098	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033473)	promoter-TSS (NR_033473)	-29.0	NR_033473	100038454.0	Mm.365649	NR_033473	ENSMUSG00000063751	Platr8	Gm13939	pluripotency associated transcript 8	ncRNA	2.94130168875149	2.83917858776812	2.94168842676675	2.81653048228789	2.76000300271551	2.78926274295501	3.04072896394944	2.75224305631037	-0.190471967701417	0.757022028550536	0.904554066545557
Merged-chr18-80739084-4	chr18	80738979	80739179	+	969.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015805, intron 27 of 28)	intron (NM_015805, intron 27 of 28)	-26008.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	5.70824112560208	5.39127507085034	5.97425378024756	6.35793068812324	4.83022794178938	5.45538751512253	5.6045147965829	5.62925398158519	-0.852107698524337	0.016185448767683	0.110562769465922
Merged-chr4-11454527-3	chr4	11454422	11454622	+	880.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31436.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	3.36262890954164	3.29120408719602	3.41699945166759	3.46851310106661	3.46692158273789	3.41887314113143	3.11207222548337	3.12026334354848	-0.335212864045913	0.539185759856963	0.791983989773924
Merged-chr4-102572836-1	chr4	102572736	102572936	+	1000.0	f1_balb.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	2776.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	3.73396401973026	3.21542244764803	4.13300125914347	3.49739271232865	3.62825469514929	3.68797123576139	3.71873022810823	3.96858659272071	0.217102218084716	0.689921136532809	0.873650535087508
Merged-chr11-70468816-4	chr11	70468727	70468927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8843.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	5.5880708517127	5.53645320022147	5.66735731827157	5.44214141442503	5.66625044014121	5.89064110945999	5.44918345763895	5.87249113372642	0.297303365836062	0.270144769752895	0.581968488248999
Merged-chr16-33560463-4	chr16	33560368	33560568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 4 of 11)	intron (NM_001083902, intron 4 of 11)	41873.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	6.77134534002706	6.80403748730333	6.55779213048148	6.89022074853916	6.76639119565501	6.89099037256665	6.60492379535098	6.51924827991925	-0.0956232664544562	0.651663120682672	0.854111497521134
Merged-chr4-95784358-4	chr4	95784267	95784467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 8 of 10)	L2|LINE|L2	182668.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	4.94926640774431	4.9295477085389	5.25976118971152	5.94584137887831	5.2403154767553	4.83207839052155	5.48055482121454	5.19350962000984	-0.280196254515101	0.474244883719075	0.751626028773352
Merged-chr4-145300340-4	chr4	145300256	145300456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009401, intron 2 of 12)	intron (NM_009401, intron 2 of 12)	14791.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	5.63254854263147	6.86101657446561	5.93470197271853	5.41139575146768	6.25371145402481	5.7564368105413	5.65981615333092	5.57176988273165	-0.408491941940825	0.458930520672595	0.741672317022856
Merged-chr11-114668515-4	chr11	114668399	114668599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023372)	promoter-TSS (NM_023372)	-44.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	6.23632321310205	6.35609432927662	6.15805522065065	5.99485117218308	6.50565156024507	6.43195304639646	6.1265752451334	6.21360024683558	0.23125929724413	0.331574667191644	0.642627926701357
Merged-chr14-70545290-4	chr14	70545194	70545394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_180588)	promoter-TSS (NM_180588)	43.0	NM_180588	72549.0	Mm.46742	NM_180588	ENSMUSG00000033589	Reep4	2700029E10Rik	receptor accessory protein 4	protein-coding	6.06389814465807	6.1787225495915	6.16519735327913	5.99037348936504	5.93752390537547	5.98879548573045	6.29446428779382	5.83351667108968	-0.112858038176975	0.644934247237841	0.850573912153132
Merged-chr16-17807602-4	chr16	17807446	17807646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153790, exon 11 of 11)	exon (NM_153790, exon 11 of 11)	10264.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	5.78421269171984	5.78725568715415	6.11323254325286	5.88203156871371	5.35994961799744	5.70266213968944	5.49816761001266	5.36963835057799	-0.69536895822388	0.00985260061299161	0.0780609879217399
Merged-chr3-146030391-4	chr3	146030283	146030483	+	904.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42513.0	NM_001166064	214804.0	Mm.268854	NM_001166064	ENSMUSG00000036863	Syde2	C430017H16Rik	synapse defective 1, Rho GTPase, homolog 2 (C. elegans)	protein-coding	4.11969686442873	4.85686417139589	4.7538836057812	4.49877168372367	4.17763187589569	4.45109569433662	4.39204283017522	4.40919018931787	-0.528982643894352	0.1922923152363	0.491838246913812
Merged-chr9-7846942-4	chr9	7846846	7847046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9889.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	5.455846734242	6.14596494506871	5.86010038325128	5.24212019374033	6.18551403085785	6.14464287743083	5.80695809772524	5.65682280729186	0.411711729149327	0.198338739446245	0.499842555411567
Merged-chr17-70746520-1	chr17	70746420	70746620	+	568.0	f1_balb.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	100257.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	3.24129490857124	3.19270466240042	2.96041335152402	2.71942770016127	2.62015388001182	2.79090430031852	3.06790226534458	3.07866841112427	-0.594878107974216	0.375143168006134	0.678205718670848
Merged-chr7-104369226-3	chr7	104369139	104369339	+	869.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-10593.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	3.67708439060148	3.93604402865951	3.88861381394172	4.23600466219209	3.7816659132927	4.00956622466782	3.54565824593471	3.73159302817261	-0.540591544817171	0.264720371040015	0.576566406596513
Merged-chr3-95706432-4	chr3	95706326	95706526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-18509.0	NM_001301705	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	6.20358086702526	5.79927022970347	6.10858036572294	6.57434015277106	5.64580885704703	5.83669569227714	5.92987602195438	5.97833775600203	-0.583158426379364	0.0370431583575599	0.19187126828211
Merged-chr3-127796488-4	chr3	127796394	127796594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356430, intron 2 of 2)	intron (NM_001356430, intron 2 of 2)	5837.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	7.25351301430162	7.64726653542023	7.26588390462195	8.07436448046181	7.30650384406172	6.99860947367244	7.61560940694512	7.43605132041423	-0.346081581788301	0.164360616669603	0.454540624198292
Merged-chr11-69696007-4	chr11	69695918	69696118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034097)	promoter-TSS (NM_001034097)	80.0	NM_011614	21944.0	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	6.73028296772279	7.03535112088025	7.0009411040361	6.95040769128988	6.44074743166753	6.29686183957338	6.33618634732435	6.32551597229562	-0.8370080115614	6.11985147072971e-05	0.00134321587368199
Merged-chr17-85574221-3	chr17	85574121	85574321	+	977.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44175.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	4.42863712911371	3.7047585627873	4.04775160266766	4.17008866600426	3.61213115142469	4.12755604437373	3.5543479250122	3.35890546820174	-1.19534533516485	0.0269069542220597	0.155947005160655
Merged-chr4-117156072-4	chr4	117155992	117156192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009098)	promoter-TSS (NM_009098)	40.0	NM_009098	20116.0	Mm.260904	NM_009098	ENSMUSG00000047675	Rps8	-	ribosomal protein S8	protein-coding	6.55133900607145	6.29888438332304	5.84634028729371	5.95545225423117	6.54874985622051	6.64824550408993	6.4718843582362	6.60810001206289	0.575988446613433	0.0203608679292962	0.129560720395081
Merged-chr13-46043165-3	chr13	46043098	46043298	+	957.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	UCON26|Unknown|Unknown	-78207.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	4.35345771725651	4.30120451150606	4.46911277118658	3.75242360811697	3.806916540345	4.31040944155179	4.0200725017471	4.22503008484963	-0.349284200020754	0.453740157947445	0.737638651163466
Merged-chr6-122945035-3	chr6	122944936	122945136	+	875.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-7479.0	NM_001204241	73149.0	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	3.58712708686199	3.35684595820895	3.82000710403997	3.6965084616733	3.3439457568779	3.47921701028027	3.29208284052557	3.36353394712004	-0.878063712987138	0.0920496959823859	0.331814307218183
Merged-chr2-167717891-3	chr2	167717809	167718009	+	841.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26732.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	3.25257107147591	2.98408896403354	3.14247027506855	3.08839488495802	3.08462542181403	2.99464237155642	3.13077994337904	3.25118417922236	0.00657609541817147	0.99067353598504	0.996373953040518
Merged-chr10-80752329-4	chr10	80752265	80752465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2838.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	6.07286600088389	6.99756566544579	6.57104573827413	6.08681783751584	6.62778287363532	6.79347894758383	6.62840108950538	6.34209831420808	0.174177303115048	0.53870954054216	0.791740959019026
Merged-chr2-167761823-4	chr2	167761728	167761928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie8|DNA|hAT-Charlie	70651.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	7.72536135281028	7.53195086480467	7.89260856103343	7.84758681280216	7.89665174702482	7.7314307407674	7.75177401246458	7.58522279257388	-0.0107395963007577	0.952169046714621	0.983078872892764
Merged-chr12-117747576-3	chr12	117747500	117747700	+	734.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 25 of 27)	(TTC)n|Simple_repeat|Simple_repeat	-96261.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	2.94188397226673	2.73163606661172	2.87167415456753	2.94959445483285	3.31185398549276	3.2474595851688	3.28739101068665	3.49283791039187	1.79619486167552	0.0023970555814622	0.026852379482672
Merged-chr8-80263084-4	chr8	80262985	80263185	+	928.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-205077.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	4.79920103863316	4.87854982798615	4.56242488160118	5.09981703900985	4.10078315695266	4.82189648996842	5.03484451178303	4.46972513729043	-0.437550279085463	0.292266742396069	0.604640308580184
Merged-chr13-21771641-1	chr13	21771541	21771741	+	662.25	f0_c57.idr	Intergenic	RLTR45|LTR|ERVK	8984.0	NM_020034	56702.0	Mm.221314	NM_020034	ENSMUSG00000058773	Hist1h1b	H1.5|H1B|H1f5|H1s-3	histone cluster 1, H1b	protein-coding	2.82286811387367	3.13346604412452	3.25257680412537	2.53354025436024	3.51043809845099	3.65233437609634	3.65398707286212	3.52785007638149	2.41266144657388	0.000270470104988717	0.00465919448281507
Merged-chr4-95850411-6	chr4	95850286	95850486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 14 of 15)	intron (NM_001113412, intron 14 of 15)	116649.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	5.67101422665427	5.19985258776776	5.85997235161661	5.47735901276277	5.62225922314725	5.82117331912504	5.82997157714608	5.71763377959144	0.306353380228447	0.277787132920561	0.589822221583767
Merged-chr17-22410944-4	chr17	22410829	22411029	+	843.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-13273.0	NM_001331197	74149.0	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	3.80325988836659	3.79531784961594	3.69225714457297	3.80816327236273	3.5134638900678	4.0788021918666	4.19239821340719	4.12984578178865	0.615103980736261	0.197010145701607	0.498329252341674
Merged-chr14-25854261-4	chr14	25854154	25854354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	12099.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	6.68998961372286	6.79573840974521	6.93496326784205	6.93077161326126	6.55911319704263	6.44786989368562	6.72937858332503	6.49291023259722	-0.406629381458159	0.0490131202162826	0.228888722220379
Merged-chr15-81860100-4	chr15	81859975	81860175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1749.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	7.81674211035557	7.94406989631327	7.49515083971457	7.64426923458964	7.89187830002984	7.60312670842512	7.67095259328193	7.83501364158861	0.0329737538382856	0.858476255119932	0.946576014812915
Merged-chr7-24593881-4	chr7	24593782	24593982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023154, exon 2 of 8)	5' UTR (NM_023154, exon 2 of 8)	-6241.0	NM_001033205	101544.0	Mm.20117	NM_001033205	ENSMUSG00000066721	Zfp575	AI326876|Znf575	zinc finger protein 575	protein-coding	5.77019117939863	5.8364195970191	5.67032501016803	6.04976912850104	5.9087929312316	5.52327400721098	5.92110458263022	5.46814438263247	-0.198017433503375	0.475309880793205	0.752188683234561
Merged-chr14-63131333-2	chr14	63131233	63131433	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	8871.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	3.14337054365778	3.53285786785595	3.07419299871174	3.31117929006488	3.38393929140214	3.85536659190106	3.37743500682291	3.27132803924327	0.707359423868963	0.212103378134209	0.516916493972183
Merged-chr16-93817087-3	chr16	93816991	93817191	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-15030.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	4.89131701989236	4.9890092049902	4.86060895913196	4.87832354928836	3.96393431369917	4.2266557903755	3.96246532498294	4.40094344128328	-1.79519044736797	5.39117664645611e-06	0.000158766471873438
Merged-chr18-83832320-4	chr18	83832225	83832425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	254237.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	6.50968765696685	6.77459388475607	6.66670105500058	6.78086209555951	6.2714132254206	6.60158773157038	6.26189426241866	6.3659788089078	-0.468053622554078	0.0318690706416758	0.174238311637134
Merged-chr1-46927265-4	chr1	46927166	46927366	+	966.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1490.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	6.68467165108861	6.48838419769316	6.46700913587397	6.87338921473585	5.03892572287141	5.02892733745016	4.99630979342158	5.50462256442896	-2.45087423135355	8.77205846322222e-18	2.18316905368425e-15
Merged-chr6-32512100-4	chr6	32512007	32512207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040277, intron 1 of 1)	intron (NR_040277, intron 1 of 1)	966.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	6.96783658716703	6.92134339667099	6.36713998494218	6.86226836012004	6.31171586476773	6.32066365432644	6.47614582667092	6.3812611351455	-0.629101467289678	0.00601715201574794	0.0543521400163607
Merged-chr2-90575245-4	chr2	90575124	90575324	+	941.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	MIRc|SINE|MIR	5423.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.51395753945218	4.31880041367805	4.1136645052769	4.3001624225396	4.25053516025427	4.48037036626104	4.28836776425653	4.58583428528685	0.200804613256602	0.604333813529167	0.828462598614024
Merged-chr10-80051963-9	chr10	80051860	80052060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110342, intron 2 of 6)	intron (NR_110342, intron 2 of 6)	-1528.0	NM_008162	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	5.7593026587401	5.5942884719472	5.76031676609159	5.91583440097511	5.36958125586108	5.52666772196971	5.25620661565836	5.84653090718349	-0.433689981217585	0.127914330127711	0.398024660291162
Merged-chr13-20184865-4	chr13	20184800	20185000	+	829.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	94393.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	4.0692841797358	4.23734748785137	4.11652695132936	3.48952032486965	4.23298454305658	4.242703834756	3.95460433343294	4.067405134558	0.348247735573116	0.461293289410102	0.743094985898739
Merged-chr5-125107516-4	chr5	125107400	125107600	+	895.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 5 of 46)	intron (NM_011424, intron 5 of 46)	71714.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	4.64546433155501	4.50797059450769	4.48817360073811	4.54714646242437	4.18030462677697	4.85252901825219	4.58675624380538	4.30535597250383	-0.115468997923473	0.766573734538861	0.908660493187862
Merged-chr14-73057027-4	chr14	73056915	73057115	+	940.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-7901.0	NM_001162412	70086.0	Mm.158324	NM_133720	ENSMUSG00000033470	Cysltr2	2300001H05Rik|CYSLT2R|Cltr2|Cyslt2	cysteinyl leukotriene receptor 2	protein-coding	5.34018152351491	5.04066453396437	5.12989066559085	5.54894052426001	5.10237208823817	4.7968990582095	4.85381153385139	5.4436644402578	-0.400484670955142	0.24210809734264	0.55277779973084
Merged-chr13-95951245-4	chr13	95951150	95951350	+	963.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59328.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	4.54222356835645	4.01301254223784	4.6593221001061	4.65859116285792	4.63649979372062	4.58988965912848	4.74267296794362	4.45620666373648	0.244530462106902	0.533991434218085	0.789042708189764
Merged-chr10-55980376-3	chr10	55980287	55980487	+	813.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126530.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	3.2129764963134	3.10918757617902	3.53400274585332	3.31697423243558	3.26781211468245	3.32496863935098	3.20204166033574	3.32763607620974	-0.0762954896825925	0.887588142654255	0.957799052224803
Merged-chr15-36933807-4	chr15	36933664	36933864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73638.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	7.00452999672941	6.9803327527866	7.56975918144703	7.45365743802502	6.81515152495758	6.946612031795	7.07955740637162	6.98802047314417	-0.448615334710457	0.0420573739667078	0.207788007328125
Merged-chr15-67118560-4	chr15	67118463	67118663	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 3 of 8)	ORR1E|LTR|ERVL-MaLR	58319.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	6.08911933996817	6.22281852199522	6.29086517708116	6.39187945277081	5.54015592883177	5.79514245261019	5.84480519678156	5.09064486235108	-1.06312412004006	0.000146829501941963	0.00280267554806301
Merged-chr5-99309171-3	chr5	99309100	99309300	+	909.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-56273.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.24396503074857	4.39067526778979	4.24467124187479	4.02891875340511	3.64253406249308	3.58656575244992	3.5884419188828	3.66151855970568	-1.78407081573127	0.000187805852401632	0.00345243614878507
Merged-chr16-90334303-3	chr16	90334206	90334406	+	825.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49803.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	3.89927092435472	4.18369947262539	4.09561210202264	3.88637630857926	3.96213174222205	4.35145436664245	3.88401867042985	3.89760841370866	0.0454800860449219	0.917511283381866	0.969630686678215
Merged-chr17-71310953-4	chr17	71310853	71311053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145158)	promoter-TSS (NM_145158)	58.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	6.68326501514917	6.50724721093229	6.86735982701795	6.78426568902215	5.83470276288702	5.90162600982836	6.27751828630595	6.39678140144368	-0.893457714452528	0.000275187508903052	0.00472901296383639
Merged-chr5-92000987-4	chr5	92000894	92001094	+	947.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13521.0	NM_001177577	381651.0	Mm.332494	NM_001177577	ENSMUSG00000096035	Odaph	Gm1045|Gm1045-a|Gm1045-b	odontogenesis associated phosphoprotein	protein-coding	4.7513367401511	4.92357842361423	5.10129223113571	4.78972739679241	5.09879318862107	4.96656090779356	5.01405876483663	4.66623526482631	0.124925531596796	0.706955996291775	0.882312931718287
Merged-chr9-108854093-4	chr9	108854014	108854214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134420)	promoter-TSS (NM_134420)	71.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	8.09447163457103	8.55796673642385	7.74298443082432	8.01588769606208	8.15081739689537	8.24104960663199	8.11349189028278	8.09680558309958	0.01588651085835	0.937680800838633	0.977435149125609
Merged-chr10-118407031-4	chr10	118406930	118407130	+	969.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34016.0	NM_008337	15978.0	Mm.240327	NM_008337	ENSMUSG00000055170	Ifng	IFN-g|Ifg	interferon gamma	protein-coding	6.20135163343078	6.51840869776037	6.61872999415035	6.54772390319595	4.86428548965269	5.26932786376552	5.66197123742545	5.48083709417582	-1.86542014099259	2.04192027425396e-10	1.49221604929284e-08
Merged-chr11-53324659-4	chr11	53324556	53324756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026479)	promoter-TSS (NM_026479)	-33.0	NM_026479	67966.0	Mm.288072	NM_026479	ENSMUSG00000018239	Zcchc10	2410141K03Rik|AA675321|D11Ertd416e	zinc finger, CCHC domain containing 10	protein-coding	5.81157616569761	5.81783623956331	5.25376339635068	5.68769862848364	5.85244399693931	5.86386619681833	6.23516127335202	5.96507740307486	0.516527494142653	0.0594548964165477	0.257026424053049
Merged-chr15-37006565-4	chr15	37006474	37006674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026521, intron 1 of 3)	intron (NM_026521, intron 1 of 3)	828.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	5.91544911015463	5.94793988039332	5.50208337257834	5.95860288305612	6.0123887451973	5.68084050389258	6.06971202004823	5.64262600893255	0.0315994065086056	0.907580611451408	0.96572638861679
Merged-chr7-143048132-4	chr7	143048018	143048218	+	950.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 1 of 4)	MTC|LTR|ERVL-MaLR	-4632.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	4.92115842450293	4.50256120483363	4.14140232092812	4.4757209116847	4.73402550746352	5.02682123150239	4.60882085000899	5.12762965116724	0.736846234077857	0.0580236017860768	0.252959021959402
Merged-chr16-90396387-4	chr16	90396275	90396475	+	966.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 1 of 10)	intron (NM_015755, intron 1 of 10)	9978.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	5.41483235977154	5.13576212288985	5.02897424662677	5.15898559808664	4.67224522625393	4.55339857048033	4.86867706215462	4.30999016660025	-1.15583328551196	0.001064692038331	0.0141493119111953
Merged-chr12-91534701-4	chr12	91534613	91534813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011648, intron 9 of 9)	intron (NM_011648, intron 9 of 9)	54936.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	5.97919125667406	5.95358512287782	6.42428274935248	6.55500770017648	6.14715530382501	6.03741107039339	6.21810835979599	6.14863130087774	-0.200008616080056	0.441482628011938	0.72851318019698
Merged-chr1-165667615-4	chr1	165667513	165667713	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-33072.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	4.90423457230616	4.00868850342772	5.03160622937694	4.79231243577645	4.83657353828904	4.50914609022441	4.97619641313595	4.72347098119697	0.0766394906212839	0.855759864549236	0.945737752088283
Merged-chr4-146168002-2	chr4	146167902	146168102	+	756.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177545, intron 2 of 4)	IAPLTR4|LTR|ERVK	10312.0	NM_001177545	667666.0	Mm.459230	NM_001177545	ENSMUSG00000066007	Zfp600	Gm13164	zinc finger protein 600	protein-coding	2.11634997648654	2.07158450776063	2.191316176248	2.19665257250807	2.2966674114522	2.43323435500998	2.38411764192165	2.4528681452421	1.47981046512538	0.0494054245681621	0.230010381014927
Merged-chr7-34193032-4	chr7	34192938	34193138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360710, exon 4 of 6)	exon (NM_001360710, exon 4 of 6)	3632.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	7.00750347128604	6.69151459771027	6.91966527483037	7.43610705370366	6.45568999124487	6.68058903610849	7.19669990916138	7.14302323150096	-0.210921422629251	0.428458200941929	0.719507959429316
Merged-chr1-134455537-4	chr1	134455402	134455602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153128)	promoter-TSS (NM_153128)	-29.0	NM_153128	240756.0	Mm.87398	NM_153128	ENSMUSG00000026455	Klhl12	C3ip1	kelch-like 12	protein-coding	5.85926279041963	5.5616468195638	5.2558468718618	5.26577332051391	5.72796316742055	5.84680001407147	5.89374105971914	5.78884040504786	0.533227535536454	0.0596042507430075	0.257375088791345
Merged-chr1-172335343-3	chr1	172335231	172335431	+	967.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5879.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	3.73024785475571	3.68491379083391	3.48648347044812	3.55087650930576	3.03561496009288	3.07709405319174	3.23999276212125	3.58777386608928	-1.30507171923892	0.0229530446003674	0.140178014724114
Merged-chr14-121409175-3	chr14	121409072	121409272	+	776.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29942.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	3.89303317447481	3.98844517287247	3.78842347396525	4.34565875100187	3.77528338340847	3.73080536947668	4.14613300859581	3.78636467791639	-0.466799955163688	0.326900767062269	0.63850693427159
Merged-chr18-24050081-1	chr18	24049981	24050181	+	641.333313	f0_balb.idr	Intergenic	B3|SINE|B2	-29268.0	NM_021559	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	3.41718152100831	3.33753302107191	3.24919278615453	3.55054530719647	3.38715831791665	3.0160889081179	3.4039855053756	3.30614220057877	-0.389667340115299	0.48149382757314	0.756657499581416
Merged-chr19-4298977-2	chr19	4298877	4299077	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	7245.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	3.30754080578321	3.08435258684946	3.1431293611549	2.96127847740575	3.01726467154822	2.99317996518721	3.34375044935019	3.08157006916837	-0.0246549251375558	0.966033298532346	0.988022131369328
Merged-chr1-151661772-4	chr1	151661669	151661869	+	907.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	90396.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	4.99171737489982	4.42915198684385	4.5517090404101	4.71280568185172	4.60717476344646	4.3057176428803	4.64591407953401	4.17536492494537	-0.511438788512102	0.195153538270492	0.495943820287216
Merged-chr16-16525646-4	chr16	16525548	16525748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	1763.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	6.95116266503035	6.84636593511922	7.01347967888743	6.83180122246783	6.84638502606229	6.57294692353201	6.63897330618234	6.98445909075568	-0.183978249823605	0.37141520504558	0.675446164536008
Merged-chr14-8115974-4	chr14	8115863	8116063	+	926.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	17752.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	4.64620709191016	4.70338122363917	5.15798350762655	4.97302098734559	4.47025693167654	4.18895484849549	4.62516801200573	4.43030879380561	-0.973423762813874	0.00996990718949391	0.0787766652662027
Merged-chr7-24972137-4	chr7	24972069	24972269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010261, exon 2 of 5)	exon (NM_010261, exon 2 of 5)	559.0	NM_010261	14470.0	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	6.15286850782687	5.76493115246204	6.5912857597656	5.76232492908035	5.77778671167814	5.69334012655966	6.14143589666989	6.31291340107746	-0.155171865762673	0.617035707432515	0.835291303503194
Merged-chr2-121179058-4	chr2	121178969	121179169	+	983.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110985, intron 6 of 18)	L1_Mur3|LINE|L1	7901.0	NM_001290824	51885.0	Mm.383499	NM_153387	ENSMUSG00000027263	Tubgcp4	4932441P04Rik|76p|D2Ertd435e|GCP-4	tubulin, gamma complex associated protein 4	protein-coding	4.89693670577492	4.88465745288455	4.16945032806831	5.26127125288162	4.90781769519186	4.67123915586807	4.87408096502798	5.02664886434143	0.00154897783001642	0.996977529676539	0.998829839188795
Merged-chr12-110498746-4	chr12	110498643	110498843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081457, intron 1 of 12)	intron (NM_001081457, intron 1 of 12)	13004.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	5.78323653487029	5.90340713809304	5.30642510195972	5.9771713761608	5.37500893703985	5.51931758226037	5.90790216258081	5.7078818113433	-0.238015203858533	0.426786372923662	0.718178378645673
Merged-chr10-81167881-4	chr10	81167788	81167988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021501)	promoter-TSS (NM_021501)	-168.0	NM_021501	59004.0	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	8.2556949368798	8.67464715857738	8.29171466421554	7.94517094114196	8.64985122391057	8.5942702484766	8.23565459973451	8.42628151981849	0.220000845995319	0.276809213128191	0.58879965876495
Merged-chr1-171102675-10	chr1	171102570	171102770	+	976.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-18991.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	4.74457736307727	4.90015468269574	4.70897167319215	4.77359460102657	4.4136009828417	4.29429464956885	4.53121465510691	4.6298710969862	-0.688395465243227	0.0526501395666017	0.239141362019727
Merged-chr1-184049239-4	chr1	184049129	184049329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	14848.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	5.76870847480199	5.90537425333223	5.76971665730626	6.01190115548908	6.25632693601453	5.72609732450565	6.18586511364398	5.97725461903815	0.289447552494796	0.262570448956547	0.574372352754482
Merged-chr11-29148725-3	chr11	29148614	29148814	+	579.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027869, intron 18 of 27)	intron (NM_027869, intron 18 of 27)	17963.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	3.31158125927089	3.3734277517814	3.4684820984391	3.17262546503491	3.42014514969385	3.17823301972608	2.99164087738026	3.19436382959014	-0.430177825897355	0.448397005830733	0.73368496417573
Merged-chr4-136896722-7	chr4	136896623	136896823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007572, exon 3 of 3)	exon (NM_007572, exon 3 of 3)	2121.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	4.84611912202747	5.13937930964943	5.51162835507856	5.00477158316691	4.63284021494055	4.82132782711905	4.70556894208062	4.91751539848354	-0.745296977740192	0.0319074977931104	0.174394823421317
Merged-chr2-181365415-4	chr2	181365323	181365523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165991)	promoter-TSS (NM_001165991)	0.0	NM_001048148	229007.0	Mm.87720	NM_144894	ENSMUSG00000027582	Zgpat	1500006I01Rik|BC021513	zinc finger, CCCH-type with G patch domain	protein-coding	7.89693731484859	7.74404203065681	7.5287016776869	7.99326750152807	7.58421914452374	7.49317179429389	7.61571333992364	7.59611770665281	-0.311475519516625	0.0866016182496991	0.321061836961872
Merged-chr13-49321636-3	chr13	49321531	49321731	+	877.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12423.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	3.94904139468421	3.82386337796176	3.53902462866985	3.75903458447901	3.56486346058256	3.82761393426295	3.52633811583256	3.90257047454073	-0.195252585707001	0.684502972140307	0.870786335680135
Merged-chr3-9828749-4	chr3	9828654	9828854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	4925.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	6.2295350786946	6.00458711270614	6.50292283019478	6.53063896494769	5.96643517918644	5.62542252944204	6.21742813825458	6.36961444945108	-0.40628727586474	0.139812445727146	0.41578065905212
Merged-chr7-97751546-4	chr7	97751501	97751701	+	687.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-13354.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	3.31243747734911	3.5033898713668	3.49019947686905	3.45452336567011	3.58575713419813	3.48838515358772	3.42095944412857	3.78246671689505	0.43849973170589	0.37684667044816	0.679494401442451
Merged-chr3-108895814-4	chr3	108895722	108895922	+	970.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5814.0	NM_001165965	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	4.79674007265194	4.40459567847806	4.41273512736563	4.80002333277342	5.23540605853445	4.81634326501408	4.77464623645877	5.02962050661079	0.726107904391134	0.0452950748825337	0.21787120793782
Merged-chr12-99526946-4	chr12	99526838	99527038	+	931.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36903.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	4.90887464494952	4.72096274638914	4.42127382649298	4.96299642088178	5.01248923161409	4.55276349629296	4.78106995142223	5.00385471194664	0.154164946543475	0.671047761935838	0.864491081523553
Merged-chr4-87944577-4	chr4	87944463	87944663	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027326, intron 2 of 10)	L1ME3A|LINE|L1	88844.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	5.49386798336787	5.60115487781117	5.34580434135365	5.78371845745183	5.69970997953745	5.39153505778945	5.76426495889849	5.31016145278489	-0.0324737873562377	0.91137997810683	0.96695373445261
Merged-chr7-143069233-4	chr7	143069145	143069345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001115085)	promoter-TSS (NM_001115085)	-123.0	NM_020285	56844.0	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	8.76390364728293	9.07019223823675	9.0448089143074	8.77398440829957	9.02423267109165	9.33148934140904	9.26073878800544	9.09290538485497	0.324587464588426	0.044108489388128	0.214204691693905
Merged-chr8-108723363-4	chr8	108723274	108723474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	8730.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	6.54177415728128	6.48222923419431	6.32683178383311	6.79195900431262	5.99118663291167	6.15197384990898	6.09956828741482	5.96904371218854	-0.771752665715292	0.00104215144322377	0.0139016674619987
Merged-chr2-117146220-4	chr2	117146119	117146319	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277256, intron 1 of 4)	intron (NM_001277256, intron 1 of 4)	25148.0	NM_033524	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	4.07531824111743	4.89272691346675	4.50847255154822	4.48678507002502	4.64240106330832	4.86758379236584	4.16745781703566	4.1824195216859	-0.0510337115468905	0.908359491237378	0.966039998613106
Merged-chr18-84950793-3	chr18	84950718	84950918	+	861.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025969, intron 1 of 5)	intron (NM_025969, intron 1 of 5)	706.0	NM_025969	67105.0	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	3.44683231804324	3.3726134625302	3.50118136325953	3.78371512599672	3.28168248721336	3.24841375144631	3.48717629438695	3.44543464660035	-0.622783542915955	0.241279755959337	0.551847683218073
Merged-chr1-36272690-4	chr1	36272586	36272786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153408, intron 1 of 3)	intron (NM_153408, intron 1 of 3)	739.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	6.17127631497095	6.17367576856638	5.53638216447791	5.98441049785438	5.99485291999514	5.55635832727451	6.02513677986552	5.96795776064762	-0.139351054789895	0.615186421117301	0.834302262907657
Merged-chr17-71868084-3	chr17	71868062	71868262	+	778.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007439)	TTS (NM_007439)	86215.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	3.62061958829524	3.60529710657324	3.38400132880433	3.53750008293859	2.88935294844065	2.91274827097919	2.87360979042398	2.88000360996287	-2.97771317896306	1.69295406392613e-05	0.000441240488158909
Merged-chr9-104002536-4	chr9	104002432	104002632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172460)	promoter-TSS (NM_172460)	-12.0	NM_028721	74025.0	Mm.479273	NM_028721	ENSMUSG00000032558	Nphp3	3632410F03Rik|AI550417|C230078J01|D330020E01Rik|pcy	nephronophthisis 3 (adolescent)	protein-coding	9.01262133542794	9.14771504180634	8.84120114629886	8.86639435176973	9.16064606618266	9.13824176462181	9.20359360353418	8.86747529595715	0.159000271137898	0.315029057370948	0.626983930058346
Merged-chr5-86960713-4	chr5	86960602	86960802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34199.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	6.2504471091663	6.08531473374633	6.13722529304852	6.62051841277107	6.08732503857697	6.16564424232691	5.71353196355858	5.62500357862605	-0.594007965875948	0.0312467396819579	0.172051650330478
Merged-chr3-69722712-4	chr3	69722632	69722832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133787, intron 2 of 15)	CpG-9222	677.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	5.27756829069319	5.2535484160866	5.56253970581017	5.118438618789	5.63010968111629	5.17571491751285	5.60789649287681	5.58375296209808	0.390325849778096	0.18799690547393	0.486491777546671
Merged-chr13-54303833-2	chr13	54303733	54303933	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67516.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	3.59492155861575	3.36044155251308	3.3790758044068	3.13111006036786	3.66372011855866	3.7635937955382	3.17963187036768	3.37729029924251	0.50638350013095	0.357379719395989	0.663494847536382
Merged-chr11-106066123-6	chr11	106066041	106066241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027346)	promoter-TSS (NM_027346)	34.0	NM_027346	70207.0	Mm.343857	NM_027346	ENSMUSG00000001983	Taco1	2310066I18Rik|Ccdc44	translational activator of mitochondrially encoded cytochrome c oxidase I	protein-coding	5.94867199968714	6.0595065052961	6.0819038648931	5.65483341778432	6.26835952370529	6.21533047960203	6.27836089750596	6.30622898398121	0.528713175985466	0.0289193012108685	0.163402979507105
Merged-chr14-20827625-4	chr14	20827531	20827731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9031.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	5.46002563442823	5.8970068194055	5.46096998963461	5.2066964554534	6.38845178798602	5.7000500557484	6.09052527394472	5.78306895089514	0.829780589563984	0.00695995497900933	0.0606433765671008
Merged-chr11-78261576-4	chr11	78261454	78261654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001002004)	promoter-TSS (NM_001002004)	-200.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	7.66806031790926	7.5762627167287	7.2608116174133	7.20851148557123	7.52994417654538	7.72751074004434	7.50430026137501	7.63956913806414	0.219903221646327	0.256449685847028	0.568097935299251
Merged-chr11-104590301-2	chr11	104590201	104590401	+	918.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13020.0	NM_001355755	17896.0	Mm.390355	NM_010858	ENSMUSG00000061086	Myl4	ALC1|AMLC|ELC|ELC1a|GT1|MLC1EMB|MLC1a|Myla	myosin, light polypeptide 4	protein-coding	3.31336603107228	2.76578779886348	2.84918588548803	2.61558070845069	3.02303974972238	3.02855137138372	3.031467465558	3.26210465480995	0.755641864183183	0.242464452939385	0.5532044136768
Merged-chr5-16466578-4	chr5	16466568	16466768	+	833.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-86827.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	3.44673971867856	3.37866250944258	3.79967778722757	3.48810459507246	3.42810333534271	3.50232234488526	3.64477503549959	3.50199124908405	-0.0475152967798144	0.924581781821297	0.972099190228437
Merged-chr1-170976077-4	chr1	170975980	170976180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010187)	promoter-TSS (NM_010187)	-9.0	NM_001077189	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	5.81501543826475	5.78080829233355	5.30504852357709	5.84927526830903	5.9554180078129	6.03579670633782	5.47139642358052	5.88011583922913	0.226351411008518	0.428220697990505	0.719325810566156
Merged-chr7-24638268-4	chr7	24638168	24638368	+	885.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133743, intron 2 of 4)	intron (NM_133743, intron 2 of 4)	1698.0	NM_133743	72434.0	Mm.281093	NM_133743	ENSMUSG00000057454	Lypd3	2310061G07Rik|C4.4a	Ly6/Plaur domain containing 3	protein-coding	4.29834206339619	4.64015491386425	4.15690925572952	4.34523477251233	4.2665565430087	4.2827630060578	4.36580048365494	4.38291576625379	-0.123268948717396	0.751415692391392	0.902145552360104
Merged-chr7-75787566-4	chr7	75787529	75787729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60709.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	6.18749373157742	6.51255018900542	6.22822350195263	6.61405951524046	6.25894336767196	6.26073140346121	6.17681538625597	6.01205354563754	-0.349076708921497	0.143675698815762	0.422069298435482
Merged-chr4-132529483-4	chr4	132529409	132529609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5905.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	5.99511556384677	6.29434297329612	6.66340555240123	6.03952634446568	6.34154063905249	6.46013633018535	6.03279319838931	5.99189728674033	-0.0652242824731557	0.808723037373698	0.926138274128125
Merged-chr13-52583501-4	chr13	52583390	52583590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198977)	promoter-TSS (NM_001198977)	53.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	6.53086863940489	6.68465418530377	6.70399796249995	6.63925588448719	6.73080441536919	6.45101319456508	6.79434693952279	6.62400990357502	0.028964827091378	0.888595446036658	0.958228889234223
Merged-chr5-122901853-4	chr5	122901749	122901949	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 12 of 22)	intron (NM_001003953, intron 12 of 22)	-1499.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	4.83686888495631	5.02277193657845	4.80038002139381	5.18880833801257	4.65876736300417	4.53747040784654	4.8146939554101	5.00578297267921	-0.454660166697236	0.190595403345774	0.489920559559021
Merged-chr9-107985282-4	chr9	107985164	107985364	+	978.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026597, intron 1 of 1)	intron (NM_026597, intron 1 of 1)	652.0	NM_026597	68176.0	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	5.62840049280873	5.70786959230163	5.49852970749566	5.3933569650875	5.76355155712158	5.40040686716299	5.41497509078803	5.14872131366168	-0.153278011744247	0.607424453623025	0.829999364685165
Merged-chr11-70334697-2	chr11	70334597	70334797	+	784.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12167.0	NM_145684	11685.0	Mm.274093	NM_145684	ENSMUSG00000018907	Alox12e	12-LOX|8-LOX|AW259591|Alox12-ps1|Alox12-ps2|Aloxe|e-LOX1	arachidonate lipoxygenase, epidermal	protein-coding	2.72970089428924	2.83563236025541	2.57343424768111	2.56170864472301	3.01364667778995	3.28570109630804	3.25681322792035	3.16772092462934	2.26989580613916	0.000292197399817959	0.00496498417800013
Merged-chr6-140489727-3	chr6	140489620	140489820	+	925.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144920, intron 3 of 30)	intron (NM_144920, intron 3 of 30)	65621.0	NM_144920	109135.0	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	3.99958969031109	3.8905636732211	4.18893997011542	4.53131436099406	3.89762512773565	4.4422642469136	4.03271345133991	3.77761641014171	-0.33900557537037	0.477724463214556	0.753900974794894
Merged-chr10-59333628-4	chr10	59333523	59333723	+	779.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316370, intron 1 of 13)	RSINE1|SINE|B4	10327.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	4.43186472846897	3.93379145802621	3.93968855466053	4.210267205552	4.18902894598444	4.1165510595451	4.25515868031195	4.22912897538558	0.128290180259908	0.757978914063682	0.904926340425875
Merged-chr5-109558822-7	chr5	109558705	109558905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016715, exon 1 of 8)	exon (NM_016715, exon 1 of 8)	188.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	6.74574481118465	6.45790671195428	6.67268640548328	6.42332186770447	6.76901503720694	7.17802976164096	6.74099807447918	6.89132009480327	0.474417184746481	0.0300506098394987	0.16744734286564
Merged-chr16-10975114-2	chr16	10975020	10975220	+	810.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	GSAT_MM|Satellite|Satellite	18001.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	3.24331380068735	3.23555741693809	3.29389564106329	2.66922988040853	2.70343089518465	2.70715789582332	2.67114114956028	3.13548193683273	-1.36698369953686	0.0548832459239016	0.244736265454999
Merged-chr6-29468172-4	chr6	29468061	29468261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025381, intron 1 of 1)	intron (NM_025381, intron 1 of 1)	378.0	NM_025381	66144.0	Mm.371614	NM_025381	ENSMUSG00000004285	Atp6v1f	1110004G16Rik	ATPase, H+ transporting, lysosomal V1 subunit F	protein-coding	7.14209214147567	7.42212928670503	7.16649772567835	7.17237607259792	7.56686471583854	7.33185108341183	7.21900704014978	6.95088384106539	0.086931679337231	0.677336859152408	0.867640151485761
Merged-chr5-112265664-4	chr5	112265549	112265749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312893, intron 4 of 5)	intron (NM_001312893, intron 4 of 5)	9829.0	NM_001312893	12960.0	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	7.48591533992028	7.52713021063132	7.27775326396684	7.72068822736637	7.57317696339697	7.78414826912841	8.08462225267249	7.88974154141924	0.418558841167942	0.0345639494621217	0.183976950649206
Merged-chr10-95507052-4	chr10	95506952	95507152	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-5103.0	NM_001359477	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	4.02787496275668	4.14174079066526	3.87362582010834	4.22118224782226	4.12993908969357	3.8797632005077	3.74559148766331	4.47148020637297	0.0235847664290637	0.959159506692827	0.985422108583596
Merged-chr19-4070925-4	chr19	4070816	4071016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-11469.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	7.09505948046368	6.81852154410409	7.21547487337031	7.09061646876885	6.8315205359541	6.69201243941704	6.86471317046816	6.73925254878688	-0.383670141031803	0.0554284825500376	0.246276152273978
Merged-chr8-47713465-4	chr8	47713362	47713562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359133, intron 1 of 2)	CpG	469.0	NM_001359133	70925.0	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	4.80793614404475	5.08075460313569	5.4069811270135	4.92212865103955	4.77412921060002	5.16951857130656	5.07065728606837	4.95688744034603	-0.142266977360462	0.673089971770248	0.865589526337487
Merged-chr7-122459803-4	chr7	122459746	122459946	+	962.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 5 of 16)	intron (NM_001316672, intron 5 of 16)	170721.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	4.27029958684107	4.68445724531357	3.95667582224085	4.50844806594481	4.76197819556216	4.30091726986334	4.42462519106655	4.06753395331434	0.0779021556488116	0.861274940699907	0.947574515069552
Merged-chr10-117330803-4	chr10	117330745	117330945	+	933.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37977.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	4.46416337847219	4.33804636397864	4.46489371977208	3.88996247027672	4.39945354807147	4.18715694617188	4.23774183889202	4.20799951012321	-0.0666253306635001	0.875200918081622	0.95304713758329
Merged-chr11-102414100-2	chr11	102414000	102414200	+	960.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-6583.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	3.07677810015327	3.40718747100717	2.86573297630985	2.77883593964727	3.42689381109916	3.37480595914408	3.24694803869723	3.36700054749134	1.15153577849546	0.0551487733860303	0.245493091985256
Merged-chr15-57694996-3	chr15	57694902	57695102	+	926.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_199449, exon 1 of 4)	5' UTR (NM_199449, exon 1 of 4)	335.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	4.03212342759985	4.16699281455479	3.88388677417645	3.94723422624908	3.84095571822619	4.00526427729713	3.91915731700512	4.16340104446591	-0.0746013971074713	0.861925637694143	0.947901186692584
Merged-chr2-5033869-5	chr2	5033849	5034049	+	869.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 9 of 13)	intron (NM_001356487, intron 9 of 13)	-21158.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	3.31922192860424	3.21385674286084	4.00868281476117	3.37725633443745	3.45487744185421	3.56081773358674	3.43028976386689	3.8003824919211	0.173325366140536	0.757173637010189	0.90457703435425
Merged-chr14-8112126-3	chr14	8112049	8112249	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	13938.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	5.64386507605182	6.26108336909142	6.26557227402249	5.95259949793944	5.42877693781931	6.31108316350231	6.00469174629111	5.96669038092358	-0.155423915621626	0.608544843588551	0.83069218743843
Merged-chr11-103984247-4	chr11	103984110	103984310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001304574, exon 5 of 5)	3' UTR (NM_001304574, exon 5 of 5)	17339.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	7.43253347384275	7.59692393944356	7.63153383450221	7.47088551581702	7.46012859842879	7.67693591694996	7.30681719455719	7.38914592056342	-0.0923071529919343	0.608845174556113	0.83079943024231
Merged-chr10-40247033-4	chr10	40246931	40247131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023323)	promoter-TSS (NM_023323)	8.0	NM_023323	67239.0	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	7.13172370937678	6.82050503958217	6.51711995006711	6.48773280889339	7.07813013277357	7.01863268529655	6.94854069302179	6.52998219435474	0.221479208489113	0.365584376301862	0.670295715323899
Merged-chr2-181186748-4	chr2	181186667	181186867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151465)	promoter-TSS (NR_151465)	-55.0	NR_151465	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	5.68487869894719	5.75536864940105	5.68586897095722	5.64745772896313	5.78445774336475	5.91028646277605	5.60527717584096	5.87204968626542	0.174040145020156	0.490523214533286	0.762251978763558
Merged-chr15-96743436-4	chr15	96743333	96743533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43705.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	5.66731761181562	5.18520109023187	5.6446067509729	5.69143969483951	5.28908897979485	5.36531380217704	5.22905145580027	5.28336289472789	-0.488238842898958	0.0953978531738594	0.338028862557852
Merged-chr6-116208091-4	chr6	116207997	116208197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026585)	promoter-TSS (NM_026585)	64.0	NM_026585	28006.0	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	7.27655616912286	7.38805969089242	6.98153275879593	7.17774341218412	6.99475582861887	6.9194751309522	6.8393822124322	6.93744834463007	-0.396983231727322	0.0415295796698258	0.206411961727179
Merged-chr10-79670442-4	chr10	79670347	79670547	+	918.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148934, intron 1 of 1)	intron (NM_148934, intron 1 of 1)	1037.0	NM_148934	110012.0	Mm.22623	NM_148934	ENSMUSG00000020308	Tpgs1	AV005629|Gm16517|Gtrgeo22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding	4.32680234652088	4.14752112749114	4.4913172329481	4.07488625493539	4.25189314489202	4.26625844385897	4.30795762625278	4.66672632061502	0.301976960882954	0.453073100399865	0.737250667901997
Merged-chr14-121973294-4	chr14	121973249	121973449	+	991.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-8156.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	4.51368152634593	4.20743495633251	4.55430801398594	4.71669563349202	4.36711735477325	4.3212038310917	4.4936161919399	4.73359856823552	-0.0815009871670239	0.833930809881655	0.936593156465434
Merged-chr2-166905995-4	chr2	166905908	166906108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023565)	promoter-TSS (NM_023565)	-88.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	7.51413826400371	7.30758340940502	7.04152112221902	7.15625268771043	7.59468133896078	7.44081861393662	6.89968832854627	7.26940038429994	0.0929084749578882	0.676114468075823	0.867055678176773
Merged-chr5-86118797-4	chr5	86118687	86118887	+	993.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172712, intron 31 of 32)	URR1B|DNA|hAT-Charlie	47041.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	4.99585440037146	4.80326059373623	5.03007787857346	4.8611970197712	4.98177895460285	5.29598975430272	4.71302382348252	4.99329972640168	0.176511997939272	0.591131310813183	0.821494671359681
Merged-chr16-59498825-1	chr16	59498725	59498925	+	809.666687	f0_balb.idr	intron (NM_174848, intron 16 of 18)	RLTR45|LTR|ERVK	27050.0	NM_025910	67014.0	Mm.289150	NM_025910	ENSMUSG00000022724	Riox2	1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204|Mina	ribosomal oxygenase 2	protein-coding	3.14838161468532	2.77450498301442	3.09786429865833	3.39097967510818	2.62889422017791	2.53823288201601	2.58879464953904	2.59419410236623	-2.87310308832622	0.000335841439918179	0.00556793735327096
Merged-chr2-137116903-4	chr2	137116839	137117039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013822)	promoter-TSS (NM_013822)	-419.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	5.62990202923189	5.72339489215246	6.49009909026151	6.19905290941768	4.93780502505896	5.45185908180464	5.27741789484148	5.19487070499042	-1.43195161282408	1.06512508125687e-05	0.000291482268968793
Merged-chr2-131352907-4	chr2	131352803	131353003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178607)	promoter-TSS (NM_178607)	-11.0	NM_178607	51902.0	Mm.477523	NM_178607	ENSMUSG00000048911	Rnf24	2810473M14Rik|4930505A13Rik|AI317164|C86507|D2Ertd504e	ring finger protein 24	protein-coding	6.83094769037984	7.17010537433663	6.96652483602915	6.9864685493668	7.06227673319175	7.00909645348004	6.85275184881776	6.86912248658134	-0.0572839802614553	0.770400582318197	0.91017698593857
Merged-chr18-80046854-4	chr18	80046765	80046965	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053117)	promoter-TSS (NM_053117)	-30.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	5.64059667352134	5.83631630794734	5.98002506093984	5.62931673126908	5.26129067208278	5.43136362788877	5.94925878989962	5.38047893687058	-0.41209880584841	0.167775817319199	0.459695448875569
Merged-chr4-55817251-4	chr4	55817161	55817361	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-284786.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.73951819803157	4.86713466160327	4.96699300957864	5.24859578401247	4.88327523638475	5.10510851155753	5.0420406589722	4.8925265414489	-0.0234282126151755	0.944289377181355	0.979989700206918
Merged-chr14-105779478-3	chr14	105779368	105779568	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117351.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	4.52378900510025	4.54174094864734	4.63213439888306	4.77473285695342	3.8926064473087	3.91178580276663	4.21219884165849	3.96910969957884	-1.58670770421814	0.000114521345983672	0.00227188263260083
Merged-chr6-48433612-2	chr6	48433525	48433725	+	584.333374	f0_c57.idr|f1_c57bl6.idr	intron (NM_001085417, intron 4 of 4)	intron (NM_001085417, intron 4 of 4)	11465.0	NM_001085415	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	2.28851669394208	2.2405876606075	2.28869377343578	1.98968265683004	2.95765307869551	2.85518939800982	3.01201610459047	3.12458275704681	6.92216762378532	2.11777987473348e-11	1.80792672669429e-09
Merged-chr4-129134935-3	chr4	129134833	129135033	+	659.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2066.0	NM_027402	384061.0	Mm.44075	NM_027402	ENSMUSG00000001334	Fndc5	1500001L03Rik|AI836596|C87088|PeP|Pxp	fibronectin type III domain containing 5	protein-coding	2.94739666879285	2.79772654539126	2.75076568079859	2.89429964857055	3.10670744206525	2.99271535330457	2.93729705424118	3.11690683926667	0.809119917999094	0.170492277803296	0.463684279922871
Merged-chr5-140736594-2	chr5	140736494	140736694	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	12467.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	2.7914328303581	2.64228981917245	2.73246326626807	2.65123927260154	2.62060060002241	2.63833228085489	2.6611885152713	2.66883583985358	-0.279088821854889	0.663837687446988	0.860777383674392
Merged-chr7-3629788-6	chr7	3629645	3629845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027328)	promoter-TSS (NM_027328)	184.0	NM_023524	69714.0	Mm.358730	NM_023524	ENSMUSG00000006335	Tfpt	2400004F01Rik|AI450389|Amida|FB1	TCF3 (E2A) fusion partner	protein-coding	5.01324986700549	4.90293814647035	5.43290743218418	4.55477632501515	5.10684522357105	4.97425044526006	4.56449192934896	4.87069628560207	-0.200463996323041	0.6004321066419	0.826786119085537
Merged-chr4-134094135-4	chr4	134094051	134094251	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013706, intron 1 of 1)	intron (NM_013706, intron 1 of 1)	922.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	4.26342456099471	4.36367285857312	4.20715485647612	3.92271872443336	5.53563257813557	5.33863730841548	5.16681979613704	5.07461092830161	2.35764104272529	1.89526744404558e-11	1.63123629262056e-09
Merged-chr8-95833797-4	chr8	95833702	95833902	+	775.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19689.0	NM_172758	234595.0	Mm.29267	NM_172758	ENSMUSG00000036534	Slc38a7	D430050E18	solute carrier family 38, member 7	protein-coding	4.22141233186253	4.04239982550288	3.72958513373252	4.30161668382945	3.73454741005018	3.84953947920483	4.07500865842748	4.17787595646448	-0.361370710661149	0.434678259390462	0.723894242651171
Merged-chr17-26244301-4	chr17	26244217	26244417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001206335)	promoter-TSS (NM_001206335)	-75.0	NM_001206335	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	7.90387887025172	7.76419650034009	7.46264737802458	7.12745086968892	8.06578916217084	8.21599687153668	7.88096415094473	7.71861339854397	0.514667377596449	0.0216982573108114	0.135123382075787
Merged-chr1-24698644-3	chr1	24698564	24698764	+	908.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026719, intron 3 of 15)	intron (NM_026719, intron 3 of 15)	19746.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	3.12229122565609	2.95829010192822	2.95335711471525	3.21379582570891	2.93116559587142	2.78996639580404	2.67999042604713	2.95190533422613	-0.999071836342576	0.115330657326425	0.375703471754582
Merged-chr9-57468087-4	chr9	57467934	57468134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020270)	promoter-TSS (NM_020270)	26.0	NM_001301634	56807.0	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding	6.32698277887467	6.48515620890989	6.53949131646921	5.70209831923596	6.46049624463474	6.46771574692571	5.78049358521809	5.80589218845082	-0.177992610359937	0.571652698354706	0.810781529929199
Merged-chr7-45718003-4	chr7	45717888	45718088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_203280)	promoter-TSS (NM_203280)	14.0	NM_203280	56632.0	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	7.01012206509544	7.0900602259106	7.04924330592749	6.96049001599927	7.27102937274779	7.37814196316844	7.13193711409157	7.46323504980485	0.39574867263624	0.0328099597903256	0.177608953374066
Merged-chr2-167951482-4	chr2	167951376	167951576	+	892.2416380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	19149.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	5.33007398834195	5.34423692878786	5.04669954727543	5.35906490250182	5.30980607834589	5.11326477854588	4.91269770946983	5.14520017236647	-0.271145086883552	0.375980582517356	0.678857538506491
Merged-chr5-125408145-4	chr5	125408051	125408251	+	957.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18134.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	5.16221680756566	5.26217545475535	4.91745611704917	5.18512709428302	5.18045906061783	4.89012244986475	5.41998591902069	5.25176272126196	0.107671451432995	0.729876917310596	0.892804127302382
Merged-chr17-86663736-4	chr17	86663631	86663831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-90133.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	6.23974545600931	6.17395611340844	6.51296407365377	6.49186402837358	5.62631813825095	6.07195961362742	6.24606067454816	6.31009653952802	-0.44103249407558	0.0952677360872782	0.337773061087698
Merged-chr7-16046587-4	chr7	16046488	16046688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25257.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	6.39960451010657	6.39913883900664	6.21689343091924	6.28485905461918	6.30034976009489	6.05805856064006	6.31587591453227	6.46271498661283	-0.0456921135828383	0.839202659407151	0.938895262970456
Merged-chr8-115414296-4	chr8	115414187	115414387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AmnSINE1|SINE|Deu	292607.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	6.58929400036236	6.30590196628318	5.95251749205739	6.68686176478032	6.41966094597989	6.22433143543624	6.22302804765171	6.01937374662938	-0.286848651773888	0.274383070486296	0.586161426637776
Merged-chr5-107687969-4	chr5	107687887	107688087	+	938.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	15493.0	NR_045871	654809.0	Mm.399159	NR_045871	ENSMUSG00000106333	4930428O21Rik	-	RIKEN cDNA 4930428O21 gene	ncRNA	4.80703963066797	4.65371143078034	4.45876786914816	4.61714763175273	4.91962629055395	4.34259869814529	4.64249936131433	4.45600357735477	-0.0287674713592458	0.93901256327202	0.977881364615113
Merged-chr11-52000809-4	chr11	52000689	52000889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009458)	promoter-TSS (NM_009458)	-323.0	NM_009458	22210.0	Mm.384918	NM_009458	ENSMUSG00000020390	Ube2b	E2-14k|HR6B|Rad6b|mHR6B	ubiquitin-conjugating enzyme E2B	protein-coding	7.25694644435184	7.15669351698469	6.50241903838402	6.77253164201182	7.19333475420511	7.42424353733133	7.06877718311377	7.15660118245498	0.361674858460158	0.118267969022741	0.380397458972873
Merged-chr4-53827003-4	chr4	53826906	53827106	+	952.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028053, intron 1 of 5)	Charlie1b|DNA|hAT-Charlie	961.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	4.78375009716223	4.78097325547935	5.13308290537372	4.99032086095328	5.09810653050245	5.14357811057391	5.01363752833705	4.85905265262287	0.198284978126786	0.536073529475945	0.790213033830861
Merged-chr3-136078774-4	chr3	136078671	136078871	+	864.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 11 of 16)	intron (NM_001033350, intron 11 of 16)	-238502.0	NR_040540	71038.0	Mm.410798	NR_040540	ENSMUSG00000106306	4933401H06Rik	-	RIKEN cDNA 4933401H06 gene	ncRNA	4.55910185027489	4.32705870981572	4.2233097501799	4.63555150768465	4.64961252865195	4.19530765135094	4.25205649579167	4.12103366324436	-0.280151318254041	0.49943440854831	0.76837831150136
Merged-chr1-151250909-4	chr1	151250781	151250981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-93605.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	6.97715516961515	7.16082364240251	7.28981403016102	7.23818409201858	7.24604334403009	7.18139950872042	7.18008443222601	6.87837241285126	-0.0580218911697935	0.766336630241993	0.908603041676297
Merged-chr9-90261515-3	chr9	90261412	90261612	+	958.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	9257.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	3.58457557208975	3.86012908661272	3.45905006702037	2.95080678742791	4.14387428227221	4.2510918515182	3.97742542376527	3.58309226966172	1.47528386925557	0.0096643005683991	0.0770578301958194
Merged-chr2-57123709-4	chr2	57123621	57123821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139509, intron 1 of 7)	CpG	282.0	NM_001139509	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	5.62165533463918	5.8428132903808	6.2402344857376	5.78617074097215	5.63370865247733	5.42502498895169	5.59427754738431	6.13074673624559	-0.267598649128392	0.369511827315881	0.673697051642945
Merged-chr2-131174842-4	chr2	131174744	131174944	+	947.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027641)	promoter-TSS (NM_027641)	-34.0	NM_027641	70997.0	Mm.252722	NM_027641	ENSMUSG00000027329	Spef1	4931426K16Rik|Clamp	sperm flagellar 1	protein-coding	4.97402036296674	4.59527345276132	4.01253014188859	4.63515403757621	4.81305248956409	4.91072158210406	4.88744719898849	4.57722681582284	0.430109879337066	0.284459302437413	0.596324963525583
Merged-chr13-76393303-3	chr13	76393207	76393407	+	965.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	8346.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	3.94777121520625	3.8840013901823	4.13730723923874	4.69855224569029	3.79341117646521	3.8479077232703	4.02867582285014	3.78408760167756	-0.973122241984515	0.0466707636435712	0.222116761526194
Merged-chr2-60905420-4	chr2	60905314	60905514	+	913.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-23976.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	4.34576252434473	4.24192624191032	3.81615098561578	4.23166237463842	4.63997290618583	4.47556486885519	4.45024025242055	4.58160791988812	0.850402963288203	0.0312992736006226	0.172271431745574
Merged-chr9-107563229-4	chr9	107563144	107563344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019742)	promoter-TSS (NM_019742)	-11.0	NM_019742	80385.0	Mm.21739	NM_019742	ENSMUSG00000010054	Tusc2	1190001E22Rik|AA407686|Fus1|Lgcc|PAP|Pdap2	tumor suppressor candidate 2	protein-coding	7.68238817565084	7.39537209541355	7.03821829842624	7.48852532413062	7.47113359326591	7.43654932784913	7.89811533599326	7.64600963209039	0.265667732712508	0.20851778672989	0.512900441304793
Merged-chr10-59227495-2	chr10	59227395	59227595	+	866.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	5573.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	3.46102203378936	3.31517353758868	3.24888626231954	2.66404606151336	3.0187409800469	3.42245103872774	3.29150620090678	2.99385209760812	-0.0542763242705321	0.93357518908236	0.976042836339903
Merged-chr10-127678172-4	chr10	127678117	127678317	+	856.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173732, intron 1 of 6)	intron (NM_173732, intron 1 of 6)	1152.0	NM_001113211	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	3.65025475084227	3.86258318670276	3.26042959957853	3.37004812358054	3.88773204657786	3.71323230060968	3.79397648634619	4.33296198872309	1.17083066129787	0.024613137764903	0.146839203165537
Merged-chr17-56762190-4	chr17	56762065	56762265	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2586.0	NM_001360405	224907.0	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	5.64746379005306	5.77805191510338	5.05647353102504	5.18119209579681	5.63898083625543	5.48511650921645	5.88627993168804	5.61927440013353	0.380435458647154	0.222401314579615	0.530444011254932
Merged-chr8-106929670-3	chr8	106929577	106929777	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6073.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	4.54573577699375	4.49803473908879	5.15580936186243	4.73439548498807	3.67770424989201	3.8768326006759	3.7354363214366	3.93616038537247	-2.51143251028899	8.18562244898439e-08	3.55922064933574e-06
Merged-chr17-81424566-4	chr17	81424471	81424671	+	836.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 7 of 8)	intron (NR_104580, intron 7 of 8)	313816.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	4.02946480797753	3.86736174702529	3.87919448621599	4.67691678537392	3.50599148227867	3.82996194762664	4.0124152503314	4.11906789136507	-0.771809576930657	0.138656396456415	0.414216102032682
Merged-chr16-55755628-3	chr16	55755538	55755738	+	931.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66500.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	3.88445230599478	4.89147016830652	4.28361486248849	4.03733056956548	4.59607076886646	4.06743534607912	3.86974529832557	3.76177390304677	-0.511460927706396	0.338198028969024	0.647818742407743
Merged-chr19-10177316-4	chr19	10177218	10177418	+	881.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57C2|LTR|ERV1	-5570.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	4.06992141626624	4.6199408139479	4.20574744694136	3.95197179661777	4.07928632409614	4.19627023673853	3.67412119487962	3.62079380748091	-0.830257571526145	0.0932495497016056	0.334038198180806
Merged-chr2-163995073-4	chr2	163994988	163995188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018753)	promoter-TSS (NM_018753)	-109.0	NM_018753	54401.0	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	7.75903359045585	7.63464437458279	7.65302836554974	7.85020946954313	7.70195838080163	8.07254547690053	8.01640955278605	7.59501572309213	0.164370124856677	0.379821749451479	0.682282195090949
Merged-chr4-139579185-4	chr4	139579078	139579278	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	4458.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	4.60259982378046	4.82080359352868	4.33498207790627	4.2829324380545	5.8738591875909	5.76520029588102	5.33847528600356	5.61100319162637	2.17912206977782	5.07889456333892e-11	4.06648634560069e-09
Merged-chr15-13173720-3	chr15	13173631	13173831	+	953.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007666)	promoter-TSS (NM_007666)	-56.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	3.83077410248619	3.98070180665604	4.27862522621109	4.06672206196908	3.46308001218367	4.24409725430455	3.76174212151655	3.71778654732712	-0.636444319746907	0.199206248410801	0.5010176868532
Merged-chr9-22467783-3	chr9	22467676	22467876	+	975.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018739, intron 1 of 5)	CpG	580.0	NM_018739	55934.0	Mm.38235	NM_018739	ENSMUSG00000032239	Rp9	PAP-1|Rp9h	retinitis pigmentosa 9 (human)	protein-coding	4.02140579221882	3.47363017263951	4.30835910470758	3.74384515936803	3.78580076864004	3.94606554853056	3.90979782593369	4.06457087976889	0.0349562975798778	0.943353558945156	0.97953264729624
Merged-chr9-10566008-4	chr9	10565924	10566124	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033359, intron 2 of 20)	intron (NM_001033359, intron 2 of 20)	338702.0	NM_001033359	244682.0	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding	5.45496740845267	5.20383743352336	5.25161660133084	5.72518655071558	5.49983589996021	5.07047305537964	5.02479308117821	5.50464630793282	-0.250679623911161	0.441588690320829	0.72855020254378
Merged-chr12-87393575-4	chr12	87393479	87393679	+	883.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5224.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	3.84761406052593	4.445550250753	4.10577556448586	4.05780406173429	4.24254750274031	4.02583728531883	4.17719838581594	3.95510009004643	-0.0557179153182791	0.897981690349438	0.961940146282087
Merged-chr9-67842964-4	chr9	67842867	67843067	+	910.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177184, intron 1 of 84)	intron (NM_177184, intron 1 of 84)	2571.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	5.039081636538	4.80786498282196	4.94664633374188	5.09548858312307	4.39601796609987	4.6629041471015	4.31945396321034	4.65452222377501	-1.01069297572715	0.00417146444606935	0.0414173061524299
Merged-chr5-148473209-4	chr5	148473119	148473319	+	877.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-73315.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	4.53010344066478	4.64054198967218	5.2532589727352	5.30173901456423	4.96686325689557	4.6644277287325	4.75945217923626	4.48107654725164	-0.508399284738428	0.200683773521441	0.502868627315772
Merged-chr19-3322398-4	chr19	3322317	3322517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013495)	promoter-TSS (NM_013495)	-884.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	5.92402752775893	6.12205712574224	6.01059767646579	5.42230204150324	5.82728394159012	5.71918281962438	6.02021879686319	5.85270998535939	-0.0321487919440005	0.910199392422806	0.966671146059764
Merged-chr5-95919582-4	chr5	95919483	95919683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37356.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	7.20324584434062	7.24575739905714	7.39135623607313	7.32940480508503	6.53455958450986	6.94192313604603	6.55267699692773	6.69743828314937	-0.853056470395475	2.02644053221856e-05	0.000515332064528008
Merged-chr5-24586743-4	chr5	24586639	24586839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133913)	promoter-TSS (NM_133913)	-11.0	NM_133913	100910.0	Mm.140672	NM_133913	ENSMUSG00000038181	Chpf2	2010209O12Rik|AW060945|Gm42230|mKIAA1402|mir-671	chondroitin polymerizing factor 2	protein-coding	5.95128140423391	5.90570804211241	6.10269644588376	5.91351445906594	5.92339428668683	6.10557532324893	6.420319510161	6.05720056591792	0.262921669792724	0.287205386942752	0.59897428178137
Merged-chr4-15080648-3	chr4	15080547	15080747	+	827.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178617, intron 3 of 12)	intron (NM_178617, intron 3 of 12)	68484.0	NM_178617	69352.0	Mm.389031	NM_178617	ENSMUSG00000040536	Necab1	1700003H21Rik|Efcbp1|STIP-1	N-terminal EF-hand calcium binding protein 1	protein-coding	3.81011416734673	4.57134624263353	4.39145145579527	4.84400163777796	3.14438295853202	3.62317876407715	3.48539643638008	3.27087750110187	-3.5900127465197	2.16814537415358e-08	1.07920573137676e-06
Merged-chr6-71444948-4	chr6	71444848	71445048	+	955.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-4311.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	4.64056897744351	5.06060180313331	4.51424178355197	4.78265477792972	4.7601596659302	4.40008759271451	4.6973541811792	4.82529323781724	-0.180866706961439	0.619945590973974	0.836929487338767
Merged-chr9-53384503-4	chr9	53384383	53384583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212445, intron 1 of 7)	CpG	460.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	6.33411915870495	5.94571497066069	6.81868874240381	6.47438079147121	6.13591367376884	6.06862332730585	6.28479280157377	6.07366978347777	-0.4295921088813	0.104420281858087	0.355318457252617
Merged-chr18-24142149-4	chr18	24142097	24142297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-20378.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	4.30723236418682	4.2992089595516	4.67899435347692	4.4340859033081	4.52680924963519	4.43538348365473	4.62089369176993	4.77762896712539	0.358858526462348	0.330934688658333	0.642104407905452
Merged-chr19-5512913-4	chr19	5512809	5513009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2392.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	6.6666706880402	6.97949452458522	6.47373408348686	6.29777251403981	6.79947705647526	6.48395562121998	6.78802322667508	6.50358519569206	0.0523843772242763	0.830694899837039	0.935017440942484
Merged-chr3-108990330-4	chr3	108990227	108990427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163567, intron 4 of 10)	intron (NM_001163567, intron 4 of 10)	37280.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	5.97734247035025	6.28925163928085	6.37959930398207	6.65935546241513	5.51699638238606	5.8552621851141	5.92521147618323	5.85645434081938	-0.902865997246379	0.000842382620432624	0.0117292551916615
Merged-chr16-32194956-4	chr16	32194850	32195050	+	800.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15150.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	4.6892360539578	4.78094060166067	4.5054233019349	4.16882766735287	4.1213108471235	4.5541882517132	4.17409945481922	4.23897674374478	-0.634343894886013	0.128952774380322	0.399509446251008
Merged-chr4-136894121-4	chr4	136894012	136894212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1198.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	5.14116428552539	5.09470887691157	4.90190745638514	4.79900842276467	5.02418354899168	5.21806670042302	4.98618243623169	5.25754116607055	0.276695221177851	0.380871553098986	0.683234362711579
Merged-chr10-22308342-4	chr10	22308252	22308452	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015465, intron 2 of 2)	intron (NR_015465, intron 2 of 2)	1632.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	6.27522930357437	6.39181507442441	5.79823448322938	5.92395891160261	5.29702345150442	5.32926037237183	5.1936635474907	5.06193891330969	-1.50238073110154	3.8878864815385e-07	1.47592464997029e-05
Merged-chr10-118857240-3	chr10	118857148	118857348	+	967.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11655.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	4.4178298062322	5.00215284613551	4.49703527602321	4.59909523680511	3.60371682368251	3.93859508310959	4.17970369701937	3.81080269635866	-1.96654178209703	2.11458858284717e-05	0.000535066835188337
Merged-chr11-54029207-4	chr11	54029088	54029288	+	928.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1084.0	NM_001330304	30805.0	Mm.274590	NM_019687	ENSMUSG00000020334	Slc22a4	Octn1	solute carrier family 22 (organic cation transporter), member 4	protein-coding	5.08181345464135	4.73606353104662	4.85589018432323	4.68303858113983	4.76128827881351	4.9554248578876	4.60154155488102	4.92202641547213	-0.0448731130426359	0.895754859481108	0.960963015915927
Merged-chr4-138856666-4	chr4	138856561	138856761	+	666.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122954, intron 1 of 5)	ORR1D2|LTR|ERVL-MaLR	6808.0	NM_001122954	18784.0	Mm.486532	NM_011110	ENSMUSG00000041193	Pla2g5	PLA2|sPLA2	phospholipase A2, group V	protein-coding	3.54359976572974	3.70841681496665	3.86235603545024	3.75761985019483	3.91120518572264	3.53312456376661	3.58935834184156	4.0347690928427	0.193060215108439	0.689638243655665	0.873540957133618
Merged-chr7-114081739-1	chr7	114081639	114081839	+	681.0	f0_c57.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	36042.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	3.42945892335389	3.71957714363421	3.42988166956565	3.33966579840009	3.71412752745164	3.5451256957717	3.68677004947306	3.79487069812374	0.66496942025905	0.173149436866407	0.467141862817497
Merged-chr2-38481348-4	chr2	38481280	38481480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30317.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	5.88929183192142	5.36679242511279	5.84677661843289	5.69581667280739	5.75797787806157	5.33950112152186	5.70164551370527	5.77434180237199	-0.0801188109298227	0.776950331957791	0.913015118902433
Merged-chr12-4918274-4	chr12	4918191	4918391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362349, intron 1 of 27)	intron (NM_001362349, intron 1 of 27)	938.0	NM_001362349	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	5.79199025304042	5.93730584272939	6.08299796974153	6.13781630128124	5.98133214631048	5.81098599288475	5.92703230364312	5.88534702691236	-0.156399587150523	0.524796260898447	0.783101934504021
Merged-chr1-59914087-4	chr1	59913966	59914166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037725, intron 1 of 7)	intron (NM_001037725, intron 1 of 7)	1060.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	7.8547504551622	8.25696434118646	8.29387920896033	8.28395546360548	7.95004269827267	7.87805422786739	8.23302751797461	7.97536588339843	-0.222081333620657	0.221527610686906	0.529567542541136
Merged-chr5-107869873-4	chr5	107869770	107869970	+	981.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 1 of 17)	intron (NM_007964, intron 1 of 17)	5237.0	NM_007964	14020.0	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	4.4202739840583	4.79742668499176	5.08740910256437	5.29133266009842	4.98032207759259	4.69975150503998	4.93481130046464	4.88604656104898	-0.148004070232304	0.694057026351436	0.875729649706936
Merged-chr2-112449348-4	chr2	112449255	112449455	+	856.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5670.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	5.35517925481564	4.8336114181874	4.65498898417637	4.80149261666435	4.31389458280819	4.56628812353445	4.67298708383542	4.69202304441448	-0.783280123765864	0.0388535702001893	0.198008394869766
Merged-chr18-61099164-4	chr18	61099049	61099249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6423.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	6.68872031380382	6.83773905195099	6.54235302167561	7.03260365330245	6.79171358643683	7.07916209530456	7.21719843657119	6.53768438470371	0.179894310938212	0.45253473089559	0.736890776226601
Merged-chr5-31362083-4	chr5	31361978	31362178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	64497.0	NM_144909	231103.0	Mm.100043	NM_144909	ENSMUSG00000059434	Gckr	GKRP	glucokinase regulatory protein	protein-coding	6.12473194472196	6.75212560068621	6.462720640689	5.61753704492354	5.84083904832563	6.03354329836996	5.89779326820008	6.14157495869571	-0.490469364023103	0.116170285768576	0.377075323577067
Merged-chr12-51845106-4	chr12	51844972	51845172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15536.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	7.0849527953813	7.17452827079096	7.06243732699969	7.22145685739318	7.03380884658992	6.89802366738225	6.94043271441288	6.93161632498137	-0.25964201112308	0.162028618512465	0.45110625807392
Merged-chr9-35166331-4	chr9	35166233	35166433	+	644.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027030, intron 2 of 5)	intron (NM_027030, intron 2 of 5)	9654.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	3.67522269822692	3.79186033562788	3.38006945736498	3.60316362193553	3.80746977729893	3.79389553019176	3.89855475673948	3.56339044278777	0.456125051531415	0.339890632946188	0.648973292268482
Merged-chr11-70849414-4	chr11	70849364	70849564	+	942.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291143, intron 2 of 18)	B2_Mm1a|SINE|B2	4703.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	4.76444279518454	4.77804428684467	4.73047258633793	3.9993006674178	4.47689804008779	4.58784369676488	4.51946241520533	4.40875851234035	-0.212504099950339	0.611178789469764	0.832228780740886
Merged-chr17-5841404-11	chr17	5841257	5841457	+	965.113647	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025664)	promoter-TSS (NM_025664)	-23.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	5.74690770176754	5.64780063032434	5.90755279274327	5.84700520809804	5.81643966585546	5.96952253564446	5.59174905998341	5.17137390842434	-0.195328613801477	0.501415431003489	0.769219556088567
Merged-chr6-47317414-4	chr6	47317294	47317494	+	831.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14_RN|LTR|ERV1	72998.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	4.09360816004367	4.42960873228083	4.73700098332884	4.52753767665377	4.04450710221571	3.88348100596138	3.61662257204806	3.98960672292604	-1.47058477716848	0.00142099406059547	0.0178796069010297
Merged-chr18-34247106-4	chr18	34247023	34247223	+	978.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360979)	promoter-TSS (NM_001360979)	-571.0	NM_001360980	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	4.78341103244628	5.00486275500749	5.15394150890952	4.90731599662612	5.17251447046973	5.63586566185229	5.15999148244513	5.30154770135141	0.672563161712852	0.03236436645475	0.176147976745883
Merged-chr9-114793548-2	chr9	114793449	114793649	+	666.25	f0_c57.idr|f1_c57bl6.idr	intron (NM_027294, intron 2 of 3)	intron (NM_027294, intron 2 of 3)	-11556.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	2.91757903849635	2.90814392915664	2.99509478344966	2.87740288709864	3.4458075600776	3.67054474509164	3.3725501039344	4.07169998548043	2.71768836504082	4.85226838097336e-06	0.000144088281639259
Merged-chr8-57540382-4	chr8	57540264	57540464	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 6 of 11)	intron (NM_001167981, intron 6 of 11)	28521.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	5.20324826064076	4.90846141563193	5.08157093126969	4.70505947818766	4.78140196480757	5.28536130722165	4.92199558567651	5.07807297554589	0.0975312319475402	0.775125780992609	0.91224145329603
Merged-chr1-182292239-4	chr1	182292149	182292349	+	821.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-8585.0	NR_015458	67330.0	Mm.331019	NR_015458	ENSMUSG00000100147	1700047M11Rik	-	RIKEN cDNA 1700047M11 gene	ncRNA	4.41653624099239	4.06880443580446	4.57202389039443	4.71109296239475	3.90085432914948	3.85478779666953	4.39667425275653	4.67350083472507	-0.512756722722138	0.27831622531126	0.590528660967155
Merged-chr3-84814437-4	chr3	84814359	84814559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1118.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	8.49571330457378	9.0098802691496	8.99604217266219	8.80760488646541	8.92803387748403	9.12396156258024	9.11395555845449	9.0353055965464	0.256964679929053	0.127025556536579	0.396437588841899
Merged-chr5-64265361-1	chr5	64265261	64265461	+	574.0	f0_balb.idr	intron (NM_001289514, intron 5 of 18)	intron (NM_001289514, intron 5 of 18)	35004.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	3.29316642475613	3.07790481713954	3.3501776567909	3.30704995818946	3.34632961710109	3.56955681854275	3.2813859576127	3.29188178068884	0.407969406367019	0.441792225852968	0.728649554973431
Merged-chr2-132029924-4	chr2	132029831	132030031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175445)	promoter-TSS (NM_175445)	57.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	6.65319795772634	6.33863472212802	5.99504976398253	6.25671796790396	5.70841735139436	6.17237242720041	5.84569827741373	6.32873624209476	-0.461756336475506	0.0927337430979334	0.333200156484998
Merged-chr10-29206900-4	chr10	29206795	29206995	+	764.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4748.0	NM_001162537	212448.0	Mm.132789	NM_001162537	ENSMUSG00000004360	9330159F19Rik	-	RIKEN cDNA 9330159F19 gene	protein-coding	3.83327885528909	3.54652047336003	3.88334624205643	4.0768616190323	3.85536325705331	3.90157288270242	3.76719625929787	3.88105486571458	-0.0302173113915821	0.948238796826122	0.981388084353081
Merged-chr17-43534990-4	chr17	43534896	43535096	+	984.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001254953, exon 3 of 3)	exon (NM_001254953, exon 3 of 3)	8643.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	5.61147454913902	5.32497721972082	5.65962920802327	5.74397159938041	4.96933284456649	5.3308546162612	5.02138869524646	5.11502179698605	-0.893285302783409	0.00285664253836037	0.0307870738508679
Merged-chr2-26389299-4	chr2	26389192	26389392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173180)	promoter-TSS (NM_173180)	24.0	NM_001085407	68112.0	Mm.253771	NM_026563	ENSMUSG00000026927	Sdccag3	C330016H24Rik|C630038K21Rik	serologically defined colon cancer antigen 3	protein-coding	6.36660081233253	6.15864011824384	6.12594063856762	6.40113719986354	6.28873550099831	6.03046805281082	5.82266594782361	6.12156498180326	-0.289946995650088	0.235493803803261	0.545490589918757
Merged-chr18-39481725-3	chr18	39481636	39481836	+	694.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	5509.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	3.06276333587071	2.90650140873083	3.06315979048279	3.14854975193788	2.83742742838164	2.98312340841314	2.99319718228	3.11817250180466	-0.297362968171846	0.613993313951215	0.833609107549057
Merged-chr7-24629011-4	chr7	24628892	24629092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001102613, exon 15 of 15)	3' UTR (NM_001102613, exon 15 of 15)	-7578.0	NM_133743	72434.0	Mm.281093	NM_133743	ENSMUSG00000057454	Lypd3	2310061G07Rik|C4.4a	Ly6/Plaur domain containing 3	protein-coding	7.33023419135713	7.22743798906913	7.40128291977033	7.49201458246086	7.4300116836642	7.23512939647188	7.36458302658133	7.19708209613735	-0.0768945887114865	0.67439010909834	0.866144208984521
Merged-chr14-73442136-4	chr14	73442047	73442247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56858.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	8.20656190931337	8.35476583490783	8.31122209855122	8.42908017640281	8.15602687256767	7.97907301405218	8.47006713634395	8.23787872839205	-0.138089082660413	0.419957395814578	0.713008002019985
Merged-chr6-124279123-3	chr6	124279027	124279227	+	941.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25524.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	4.00935715953732	3.5744852073258	4.21875564909584	4.19278622955521	3.74925030871738	3.87991817764429	3.79847056703111	3.70150747136219	-0.696321302857557	0.144303196343145	0.423281843423254
Merged-chr1-51930811-4	chr1	51930709	51930909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14831.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	7.20739527915326	7.53820161258537	7.31057258102701	7.25826382925257	6.65442133123819	6.48072452193637	7.11832888687749	6.43838602908134	-0.87257370346039	0.000138315201299164	0.00266733614556304
Merged-chr10-117418139-4	chr10	117418039	117418239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29296.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	6.44450908325511	6.39872267199137	6.62685994558034	6.65265775611113	6.72170547073941	6.65708170312123	6.65270146490203	6.57527946798729	0.162140749424869	0.436220599857711	0.72505818409614
Merged-chr4-130914164-4	chr4	130914072	130914272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	L3b|LINE|CR1	838.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	7.65875414134616	7.71977779114555	7.82031433967045	7.95586504857364	7.83438076667518	7.69258919993321	7.85529001339674	7.68850834630395	-0.038207909237144	0.823490238297806	0.932313798231142
Merged-chr10-127514389-3	chr10	127514304	127514504	+	994.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098789)	promoter-TSS (NM_001098789)	-535.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	3.86094455339208	3.92512008160507	4.03275313924219	3.7869468644804	3.45780948062421	3.5461152294488	3.21479411528748	3.54982812323448	-1.46018600956838	0.00431103887890432	0.0425069739786215
Merged-chr3-59262317-4	chr3	59262219	59262419	+	793.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177855, exon 34 of 44)	exon (NM_177855, exon 34 of 44)	666.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	3.81741204120803	3.48871113315036	3.62219673783504	3.5694649383533	3.87106482996523	3.43996066410659	3.70806427630941	3.38957970152847	0.00798635230180855	0.987444172931099	0.995274483992449
Merged-chr5-22898776-3	chr5	22898686	22898886	+	930.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359998, intron 1 of 3)	MIR3|SINE|MIR	-151902.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	3.65040026976815	3.37240297359148	3.41537257956901	2.62704721556642	5.284603570479	5.07636497240747	4.98670858963273	5.01075806439695	6.09786746910802	9.88237416763038e-22	4.13775006398684e-19
Merged-chr10-20882804-4	chr10	20882711	20882911	+	719.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69736.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	4.06742163348871	3.95172153142354	4.33021026729222	4.08814610760703	4.14293965180094	4.24031656390282	4.14320181891279	4.01626321404227	0.0654909073875798	0.872906885456235	0.952341117683231
Merged-chr14-45142777-4	chr14	45142685	45142885	+	901.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310534, intron 18 of 20)	intron (NM_001310534, intron 18 of 20)	76640.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	4.01788007018975	4.00819932467769	4.51204454080987	4.58970973046294	4.14065557902922	4.08697166851977	4.41462071608724	4.54563091107928	-0.0328841288975307	0.940563428910886	0.978654793543509
Merged-chr12-21369685-2	chr12	21369602	21369802	+	868.0	f0_c57.idr|f1_balb.idr	intron (NM_001291871, intron 1 of 18)	intron (NM_001291871, intron 1 of 18)	3930.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	3.53599483898598	3.25389718750966	2.96274374819348	3.21312314419843	3.65590595031568	3.48656296796321	3.61983184834177	3.63375446140838	1.18160226549722	0.0279940451772167	0.160085815189934
Merged-chr13-43565613-4	chr13	43565502	43565702	+	924.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5411.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	5.36194952524301	6.00821158498702	4.98722807429069	4.70089443668566	5.1474813425404	5.20082629225198	4.7264437587931	4.50884214162676	-0.806558194493069	0.0637364785451057	0.268141361578274
Merged-chr6-116673872-4	chr6	116673800	116674000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178045)	promoter-TSS (NM_178045)	-64.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	7.23063673329822	7.17168171019484	6.64340176090888	6.54098276358594	7.17835400746283	7.53050183128305	7.45420475963444	7.22681978128463	0.586135825963399	0.0135093895469165	0.0975831985548982
Merged-chr18-6244352-1	chr18	6244252	6244452	+	541.0	f0_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2828.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	3.12164023281495	3.21503096451652	3.18123252661331	3.22063898141409	3.53781284496647	3.10315057041022	2.77267971071113	3.17958002112911	0.00324662019502045	0.995896482051337	0.998543856884531
Merged-chr7-25278430-4	chr7	25278300	25278500	+	962.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 2 of 20)	CpG	-3779.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	4.54972384588031	4.95005723727834	4.87550218384944	4.50862031552532	4.91960735402029	5.08367610344504	5.16542201997381	4.83582808502676	0.56836828758413	0.0970794719529947	0.341353541181752
Merged-chr16-21836874-4	chr16	21836742	21836942	+	836.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42495.0	NR_037957	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	3.85321505587828	4.18885258309421	3.95868500631466	3.93765229143759	4.13312569332795	3.85933554462628	4.21065455025557	4.09915422404475	0.254431556195316	0.549367597149062	0.79798967011526
Merged-chr11-59541526-4	chr11	59541416	59541616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359638)	promoter-TSS (NM_001359638)	-53.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	8.02685531042076	8.3170854410358	7.7099565629097	7.48903114709573	7.95862429965085	8.28796888491736	7.85933917462046	7.67917414073548	0.0569633910742223	0.806221997781087	0.925372909021511
Merged-chr12-98920585-6	chr12	98920479	98920679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029553)	promoter-TSS (NM_029553)	5.0	NM_029553	76260.0	Mm.282660	NM_029553	ENSMUSG00000021013	Ttc8	0610012F22Rik|AV001447|BBS8	tetratricopeptide repeat domain 8	protein-coding	5.66601563251857	5.00199566493241	5.59253463674908	5.02219846648105	5.3060358581626	5.90986667730387	5.58916379847014	5.63864338111026	0.485800968993463	0.141524925338516	0.418582342752025
Merged-chr2-58752401-4	chr2	58752294	58752494	+	874.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	-2790.0	NM_001289659	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	3.80062141827405	4.03622763948884	3.74532599317521	4.10507922996116	3.97040628523966	3.80549654144699	4.2359560860797	3.903828995374	0.124651295423449	0.782835491768212	0.915388590183887
Merged-chr11-62646782-4	chr11	62646681	62646881	+	925.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198861, intron 1 of 3)	intron (NM_198861, intron 1 of 3)	1268.0	NM_001357955	192976.0	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	4.65461256267699	5.11339433743109	4.37678641416143	3.85851684368324	4.88357170611073	5.72167068815425	4.71354394332151	4.60969161854348	0.940975188096869	0.0520955866935222	0.237638539173175
Merged-chr13-19418041-4	chr13	19417907	19418107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22194.0	NM_001347485	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	6.14565063184041	6.51894615446416	6.06316960811939	5.77786035464078	6.37599596355076	6.08016337496697	6.28425333382938	6.08023597412877	0.113421609844339	0.672163060497059	0.865064843062374
Merged-chr6-148986154-4	chr6	148986057	148986257	+	910.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39687.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	5.01144101618147	4.78910744134477	4.85658473162036	5.424826049381	5.1837385943144	5.45020928307424	5.71465919769942	5.18028770402348	0.599267348627247	0.0874926930259266	0.322542075662545
Merged-chr15-95828209-4	chr15	95828116	95828316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	1856.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	6.92789898230092	6.73572696924676	7.08935038633843	7.21868054510457	6.89522679580743	7.07930074697015	6.75575229287642	7.08436204302229	-0.0800056304867823	0.706989586437207	0.882312931718287
Merged-chr7-99963025-4	chr7	99962948	99963148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	17410.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	6.01400061111198	6.30499339667907	6.24500301588759	6.31827807045021	5.59000536290486	5.55524953528689	5.67808422637408	5.70293384827113	-0.966844989412403	9.11841608498161e-05	0.00187909594242301
Merged-chr4-58506958-4	chr4	58506860	58507060	+	994.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	-7557.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	4.9272482404787	5.32434324278583	5.76874672956365	5.70295786736393	5.30341237836736	5.10925687350191	5.25793502807283	5.37042629501763	-0.386920880898776	0.239670772129075	0.550165308609889
Merged-chr5-96921221-4	chr5	96921129	96921329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131152)	promoter-TSS (NR_131152)	-43.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	6.61138056842937	7.10185050830696	6.88448556634687	6.93817641774158	7.29667267517176	6.66784888341934	7.06076059100554	7.10292032426861	0.222121338674107	0.32183754520013	0.633309593879245
Merged-chr8-33664650-3	chr8	33664542	33664742	+	962.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	RLTR6_Mm|LTR|ERV1	11404.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	2.77671853869695	2.70479615959609	2.77698228439923	2.28903624505855	3.97337389484537	3.8035827846622	3.90880800678333	3.62369164777804	7.73125703765429	3.2288586899822e-15	5.39499842005266e-13
Merged-chr16-13902348-4	chr16	13902280	13902480	+	950.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289562)	promoter-TSS (NM_001289562)	765.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	4.80842888811931	4.71267394603107	4.62750226859674	4.81790571099644	4.51980040935187	4.44880489453454	4.48425232861099	4.50164446849769	-0.569491036278251	0.102619346239379	0.351907938439718
Merged-chr5-124075073-4	chr5	124074974	124075174	+	987.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019875, intron 9 of 11)	intron (NM_019875, intron 9 of 11)	20724.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	6.07699208514694	5.80719051777606	6.09733107432768	6.07155366959043	5.72400094649279	5.20977819581789	5.63999368042788	6.01412336254733	-0.543326322334216	0.0546321203718997	0.244047928702865
Merged-chr6-30546942-4	chr6	30546849	30547049	+	893.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024698, intron 4 of 10)	intron (NM_001024698, intron 4 of 10)	5307.0	NM_001024698	232680.0	Mm.268855	NM_001024698	ENSMUSG00000071553	Cpa2	-	carboxypeptidase A2, pancreatic	protein-coding	4.80966187802247	5.0209374876442	4.77310421134496	4.62723234189753	4.84296544728396	4.98296507277672	4.7125216887908	4.69193536388845	0.0142379465803616	0.966608191975477	0.988217650432256
Merged-chr14-77794659-4	chr14	77794573	77794773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033440, exon 3 of 3)	3' UTR (NM_001033440, exon 3 of 3)	4295.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	6.37440786443434	5.92821899424172	6.54256994486939	6.13714381801488	6.50406181244604	6.86441539709874	6.28834346420869	6.42341308512078	0.413932590035683	0.103669060885311	0.353826904088016
Merged-chr2-103719099-3	chr2	103718996	103719196	+	742.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178890)	TTS (NM_178890)	42174.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	3.65143619042612	3.52173793555728	3.59568648093202	3.76117468530394	3.858580690042	3.65315189487645	4.01139227238371	3.80507042267894	0.578295890039139	0.214527509765951	0.520353182806768
Merged-chr14-44986490-4	chr14	44986418	44986618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1593.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	7.3317026023884	7.42301236122423	7.30314608253718	7.20040337313246	7.03092814228977	7.09487601910878	6.8265695551303	6.73658772133015	-0.519810069574132	0.00759427959965307	0.0647369134878689
Merged-chr1-72380991-1	chr1	72380891	72381091	+	547.0	f0_balb.idr	intron (NM_001357519, intron 16 of 20)	C-rich|Low_complexity|Low_complexity	73570.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	2.85064140168573	2.68626259372253	3.10054429366949	2.91182525208179	2.30600907965317	2.33200277353091	2.30813813031198	2.31204206240229	-4.45031617441458	4.86761377603274e-05	0.00110623205927278
Merged-chr11-48924016-3	chr11	48923906	48924106	+	695.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045540, intron 1 of 2)	intron (NM_001045540, intron 1 of 2)	3176.0	NM_001045540	620913.0	Mm.452174	NM_001045540	ENSMUSG00000048852	Gm12185	Irgb2b1	predicted gene 12185	protein-coding	3.29606637791627	3.12473908195784	3.18460791070422	3.1901254504272	2.90779359808089	3.03583704318618	3.22904394012502	3.39730120215089	-0.182944117926621	0.750534908887434	0.901825252029081
Merged-chr10-83343373-4	chr10	83343265	83343465	+	971.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-5548.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	4.74083177365759	5.14423307796412	4.93968723977616	4.8482650406231	5.52351243908656	5.31558258703585	4.95195587205861	4.9725743562971	0.570565253770496	0.0884155532249154	0.32448211719496
Merged-chr8-39006300-4	chr8	39006203	39006403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357305, intron 1 of 8)	CpG	458.0	NM_001357306	80286.0	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	6.39658573311579	5.74077831765084	6.20496495621257	6.28214031433289	6.77277273739471	6.81645419448166	6.92825600979401	6.44562493752981	0.837323463405266	0.000725171785275716	0.0104150529669371
Merged-chr2-59969361-3	chr2	59969274	59969474	+	846.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001001182, exon 7 of 36)	exon (NM_001001182, exon 7 of 36)	-86768.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	3.12135019416388	2.73992400515037	2.81015902727211	3.16558658482254	3.18787288596511	3.05141283091396	3.05372235314841	3.00445568611946	0.393236575856927	0.526246326812452	0.783568247232079
Merged-chr16-31235626-4	chr16	31235520	31235720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34382.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	7.7567536784991	7.44535904741506	7.75016627434925	8.02900868203723	7.65944503489562	7.71231221448609	7.92261261830244	7.67156921290698	-0.0348191483452559	0.857769338565143	0.946392149155271
Merged-chr13-56334480-4	chr13	56334372	56334572	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-28428.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	6.14485393866922	5.90385700633373	6.01080339385279	5.89232300588091	5.1800613524238	5.98773060010325	5.73436821772449	5.62920935929943	-0.55081779300863	0.0565154933638482	0.248999904570834
Merged-chr7-126097708-4	chr7	126097601	126097801	+	878.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15290.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	4.86392005028691	5.16550259652352	4.57324332292787	4.92119324054551	4.18739557800615	4.37997831009086	4.33154385376809	4.29850767081215	-1.3681681609371	0.000307611862361803	0.00517746624522363
Merged-chr2-45111273-4	chr2	45111158	45111358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289521)	promoter-TSS (NM_001289521)	120.0	NR_110572	433424.0	Mm.441408	NR_110571	ENSMUSG00000052248	Zeb2os	Gm13476|Zeb2nat	zinc finger E-box binding homeobox 2, opposite strand	ncRNA	5.56261185269928	5.73368442390636	5.56357722902853	5.62243226340055	5.74718196207059	5.91601955183516	5.71351044265945	5.28510569326696	0.103818176640715	0.707273670853895	0.882414568664592
Merged-chr4-9072154-4	chr4	9072043	9072243	+	795.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-197150.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	3.57732226605573	3.67061423133892	3.57779709428249	3.82803977178305	3.52686595567998	3.6367951742457	3.5640641909636	3.62940459410337	-0.294411121182388	0.539137187125401	0.791983989773924
Merged-chr3-58525905-4	chr3	58525817	58526017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030685)	promoter-TSS (NM_030685)	-33.0	NM_030685	28146.0	Mm.29702	NM_030685	ENSMUSG00000027808	Serp1	D3Ucla1|Ramp4	stress-associated endoplasmic reticulum protein 1	protein-coding	9.11118073977824	9.35265986154047	9.48648443158688	9.43357306897716	9.17583270786569	9.4698654906576	9.3974746626284	9.28903365079028	-0.0247423012823533	0.873550313827455	0.952619493264257
Merged-chr19-60161129-4	chr19	60161030	60161230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_026942, exon 5 of 5)	non-coding (NR_026942, exon 5 of 5)	16455.0	NR_026942	107376.0	Mm.245813	NR_026942	ENSMUSG00000053117	E330013P04Rik	9930018I18Rik|AW492152	RIKEN cDNA E330013P04 gene	ncRNA	6.4807783531169	6.45042325354975	6.39379031010978	6.67330152011381	6.64239789049888	6.51494041787186	6.80087168439764	6.38922543657377	0.11986195401582	0.587026448939571	0.819020240489832
Merged-chr18-35772137-4	chr18	35772033	35772233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019912, intron 1 of 6)	CpG	574.0	NM_019912	56550.0	Mm.180052	NM_019912	ENSMUSG00000091896	Ube2d2a	1500034D03Rik|Ubc2e|Ube2d2|ubc4	ubiquitin-conjugating enzyme E2D 2A	protein-coding	6.14204469587789	5.77475508280891	5.532262028263	5.61185300354117	6.37202174004462	6.10879962433463	6.29085504796283	6.13872081667049	0.727158232389736	0.00502686386204987	0.0477454954243807
Merged-chr8-83695512-4	chr8	83695435	83695635	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177262, intron 1 of 21)	(CA)n|Simple_repeat|Simple_repeat	-1474.0	NM_001199593	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	5.53435613271746	5.27704833499601	5.5091295267747	5.35428354840828	5.26562560908027	5.45290035943974	5.18683307299213	5.60679695624665	-0.0580954275534415	0.840476476574554	0.939305852792169
Merged-chr3-100162450-4	chr3	100162352	100162552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175552)	promoter-TSS (NM_175552)	-11.0	NM_010269	14547.0	Mm.279228	NM_010269	ENSMUSG00000027865	Gdap2	C77050|D3Ertd801e	ganglioside-induced differentiation-associated-protein 2	protein-coding	7.53617092889657	7.50796967260046	7.77776854805897	8.00282965815382	7.86334308607794	7.86623071567411	7.89366190667949	7.89153100678079	0.187383693077663	0.315941796966947	0.62781575496774
Merged-chr7-43671206-4	chr7	43671092	43671292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145582)	promoter-TSS (NM_145582)	-839.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	5.45270354784013	5.69219677748838	5.80106873273676	5.63716726262948	5.65040710683272	5.85341648183866	5.94471824138803	5.77337284255798	0.251232678747289	0.333134566967047	0.64399149963087
Merged-chr17-8199246-4	chr17	8199136	8199336	+	943.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33718.0	NM_201230	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	4.97979330275463	4.78379274603562	4.73183120091795	4.99439347725755	4.40060758744854	4.50478196916621	5.18868648371572	4.84122384885756	-0.236412126694719	0.531480246744266	0.787358887818389
Merged-chr2-90904711-4	chr2	90904556	90904756	+	991.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311116)	promoter-TSS (NM_001311116)	65.0	NM_026688	68349.0	Mm.30113	NM_026688	ENSMUSG00000005510	Ndufs3	0610010M09Rik|CI-30kD	NADH dehydrogenase (ubiquinone) Fe-S protein 3	protein-coding	5.44524371749868	5.37566386068445	5.07927222802309	5.18784209593436	5.5150542299345	4.80393829626869	5.33712480080316	5.3602061378946	0.0303267436936755	0.924852591000123	0.972242873959408
Merged-chr15-102378029-2	chr15	102377929	102378129	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11061.0	NM_001348205	170574.0	Mm.263284	NM_130458	ENSMUSG00000060284	Sp7	6430578P22Rik|C22|Osx	Sp7 transcription factor 7	protein-coding	2.75709134052774	2.86035816639171	2.87421005975101	2.58667659854853	2.81009618392238	2.51119220004423	2.62098932877737	2.62785305764925	-0.570226285585387	0.401165224228067	0.698869974053897
Merged-chr1-90998538-4	chr1	90998459	90998659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111312)	promoter-TSS (NM_001111312)	-168.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	5.56643948627826	5.39790280495755	5.86102329864772	5.46032623603357	5.03323992292262	5.21841129224307	5.53915876235183	5.21390588137258	-0.563760644228531	0.0639864767503184	0.268748226610458
Merged-chr10-117147681-4	chr10	117147567	117147767	+	934.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 1 of 9)	intron (NM_177798, intron 1 of 9)	807.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	4.25354581934137	4.24431819582558	3.87202526236717	3.66465233247285	4.51119339728728	4.20289584958328	4.05928637283887	3.69270399052636	0.334461642932295	0.496781666228538	0.766688107813818
Merged-chr7-101838353-2	chr7	101838253	101838453	+	924.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122739)	promoter-TSS (NM_001122739)	-127.0	NM_010567	16332.0	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	4.10992127927795	3.89485301426727	3.87425548649919	3.57373980102663	3.66154292020728	3.88888486323262	3.75121045965058	4.47807219434481	0.314265528542496	0.532158751196128	0.787904893424633
Merged-chr5-99278454-1	chr5	99278354	99278554	+	726.0	f0_balb.idr	Intergenic	Intergenic	-25527.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.65887387477119	3.16271767850537	3.11401541046224	3.20471312099345	3.00939219794873	3.16199487823992	2.83344703921253	3.11245164854157	-1.05374138793997	0.0853072032404925	0.318041894659862
Merged-chr5-49090381-1	chr5	49090281	49090481	+	561.0	f0_balb.idr	intron (NM_001199244, intron 1 of 7)	intron (NM_001199244, intron 1 of 7)	195278.0	NM_001199244	80334.0	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	3.40667807084474	3.50721015995586	3.6126127820729	3.18475301532514	3.45573832984804	3.40388060950582	3.15295094845631	3.4052790587132	-0.227751583776284	0.673381549078276	0.865720676995261
Merged-chr3-19214777-4	chr3	19214699	19214899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 4 of 7)	intron (NM_001356295, intron 4 of 7)	26504.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	5.1467606688823	4.97602409071896	5.44593215510815	5.63765319795497	5.57178019993495	4.80288763684317	5.15543072199411	5.35984519381185	-0.13542826266055	0.701022253343903	0.879483655557957
Merged-chr19-12007844-4	chr19	12007737	12007937	+	968.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	28903.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	4.5823854160948	5.03000107582053	4.87042714008698	4.72844897846205	5.32509128919094	5.08019389534598	4.77209087906961	4.97297962671973	0.499416173663149	0.143979085894148	0.422642851071835
Merged-chr15-97379521-2	chr15	97379421	97379621	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 5 of 5)	intron (NM_172293, intron 5 of 5)	-132234.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	3.04253708539668	2.88874519346538	2.98422880572061	3.22649627636953	3.24227313124122	2.82217481317069	2.84962453752186	2.85694179204605	-0.344068141228742	0.589709881701704	0.820539533210917
Merged-chr6-53968608-4	chr6	53968506	53968706	+	954.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027749, intron 2 of 12)	intron (NM_027749, intron 2 of 12)	10067.0	NM_027749	71287.0	Mm.158654	NM_027749	ENSMUSG00000052955	Cpvl	4933436L16Rik|HVLP	carboxypeptidase, vitellogenic-like	protein-coding	4.99625405946522	4.5135047620546	4.50491097038519	4.99192964726222	4.71874495564713	4.63748507289453	5.09096412512907	4.75257706837708	0.0516421951202424	0.889115220488853	0.958460693333562
Merged-chr17-26916969-4	chr17	26916881	26917081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053173)	promoter-TSS (NM_053173)	-110.0	NM_053173	16580.0	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	7.88352243534604	8.18901944483776	7.74592059316117	7.20084809760729	8.08520164936383	8.40535902301787	7.78705514316347	7.84996162400983	0.332521791328734	0.175916742425577	0.470789104376815
Merged-chr15-99116563-4	chr15	99116454	99116654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10291.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	5.23300731944915	5.62317466994393	6.24734305399053	5.93803666211287	5.46015356632313	5.51429555060306	5.402544188287	5.39526970035654	-0.630498375858514	0.0466906566206623	0.222151761469776
Merged-chr11-107547795-6	chr11	107547736	107547936	+	862.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198298)	promoter-TSS (NM_198298)	-124.0	NM_198298	78455.0	Mm.272047	NM_198298	ENSMUSG00000020721	Helz	3110078M01Rik|9430093I07Rik|9630002H22Rik|AI851979|DRHC	helicase with zinc finger domain	protein-coding	4.32806159772206	4.2561126019717	4.2859788498055	4.36904082563669	4.14406245595415	4.49848902517535	4.17770781938818	3.93683799808918	-0.280676654432172	0.48805831513728	0.761126159857708
Merged-chr6-129098040-4	chr6	129097949	129098149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153506, intron 2 of 4)	intron (NM_153506, intron 2 of 4)	2854.0	NM_153506	232409.0	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	6.07513578589042	5.58495669779875	5.60359518347592	5.88607933854879	5.97698463875111	6.16898619175843	5.51735810927847	6.18471118245987	0.288463158512677	0.3118956160044	0.623799995829531
Merged-chr6-125046861-4	chr6	125046758	125046958	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133345, intron 2 of 7)	intron (NM_133345, intron 2 of 7)	2995.0	NR_130997	78202.0	Mm.445941	NR_130997	ENSMUSG00000108034	4930557K07Rik	Gm43989	RIKEN cDNA 4930557K07 gene	ncRNA	4.29749380916221	4.27475837120567	4.05081089353562	4.22016639042493	4.58452441684638	4.17610865703872	4.44594388719306	4.68045118077732	0.648542956407043	0.0952849433209109	0.337796940962203
Merged-chr11-100282829-2	chr11	100282729	100282929	+	787.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12958.0	NM_212483	68239.0	Mm.158190	NM_212483	ENSMUSG00000053654	Krt42	2410039E07Rik|K17n|Ka22|ecat6	keratin 42	protein-coding	3.11540367299467	3.12962409523699	2.9438561055456	2.82857908104009	2.81722199243418	2.92215070408483	2.93334171371048	2.81383123586502	-0.589745732508377	0.33573084247787	0.645934307404376
Merged-chr3-122104638-3	chr3	122104544	122104744	+	902.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007378, intron 13 of 49)	intron (NM_007378, intron 13 of 49)	60184.0	NM_007378	11304.0	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	3.82349402297249	3.97179213417878	3.71391125426961	4.02078944725904	4.03619794348214	4.27379677762547	3.58149293329524	3.82187325295858	0.158832871494865	0.738015339212776	0.896580162228794
Merged-chr2-91649543-2	chr2	91649443	91649643	+	862.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027371)	promoter-TSS (NR_027371)	248.0	NM_001347175	381410.0	Mm.330401	NM_001033451	ENSMUSG00000075040	Zfp408	Gm1011	zinc finger protein 408	protein-coding	3.04405350176207	3.03652692314794	2.78714227573596	2.93277222681053	2.89161015141737	3.09379196006403	3.032973524503	3.09982637900589	0.312823947498918	0.593198313469378	0.822553370861762
Merged-chr7-101563207-3	chr7	101563111	101563311	+	759.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-2346.0	NR_033804	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	2.73991412687954	2.74732485780276	2.82372511269088	2.45919959071198	4.00668817087211	3.64454504881945	3.50256533353502	3.4145064049069	4.59085327680064	5.53600689020714e-11	4.40768942324445e-09
Merged-chr14-66297518-2	chr14	66297418	66297618	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038077)	promoter-TSS (NR_038077)	-389.0	NR_038077	69303.0	Mm.352258	NR_038077	ENSMUSG00000085984	1700001G11Rik	-	RIKEN cDNA 1700001G11 gene	ncRNA	3.51388202675217	3.72338006756211	3.5681856948047	3.47521821639173	3.5264005768075	3.24777034256212	3.44551681203536	3.80306878904696	-0.155487572901041	0.763253271816605	0.907138283067577
Merged-chr6-90728836-4	chr6	90728758	90728958	+	947.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	-12329.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	4.75710559085352	4.90866197593355	4.35973440882401	4.50190854523722	4.84707009451047	4.96859100241291	4.80872052381922	5.0875950875362	0.589989423534795	0.0925256982648732	0.332721363887815
Merged-chr14-120276504-4	chr14	120276411	120276611	+	905.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	842.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	4.22610200601947	4.11030745965058	4.41990663636315	4.76654895241146	4.67739773451599	4.5952553167136	4.87628600812221	4.69808698280938	0.622630461526652	0.12310271283335	0.389007542303628
Merged-chr12-41300481-3	chr12	41300377	41300577	+	941.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	185580.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	4.30789319293967	4.46424343277897	4.83837181750187	5.06083709275829	4.44735500178263	4.23367382838089	3.97726236655633	4.15737964687	-1.13328001274349	0.00936055381600492	0.0753108240159844
Merged-chr2-76647289-2	chr2	76647189	76647389	+	735.466675	f1_balb.idr|f1_c57bl6.idr	exon (NM_011871, exon 2 of 8)	exon (NM_011871, exon 2 of 8)	705.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	3.89086788307206	3.42157295574043	3.23612060928636	3.62718981644833	3.46897965076868	3.87655859301312	3.47948596033351	3.70537844176974	0.225394727378539	0.67178724528711	0.864905117611895
Merged-chr6-129400094-4	chr6	129399994	129400194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019985, exon 2 of 6)	exon (NM_019985, exon 2 of 6)	2797.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	8.25907630681332	8.51329422765205	8.20746401562968	8.48974194033392	8.29489360907859	8.19741056913383	8.36271640004442	8.02138579503213	-0.19408925306383	0.252604575275173	0.563854219724625
Merged-chr2-11589595-4	chr2	11589508	11589708	+	930.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 7 of 11)	intron (NM_152824, intron 7 of 11)	13591.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	3.59930969134612	3.85797109710241	4.3655138407599	4.67092863397118	4.13838893773362	4.08444084528063	4.13814775732749	4.05994433794906	-0.248099614682454	0.628317127334904	0.841485056939805
Merged-chr8-35377174-1	chr8	35377074	35377274	+	758.5	f1_c57bl6.idr	intron (NM_177741, intron 1 of 1)	intron (NM_177741, intron 1 of 1)	1433.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	3.37679434032563	3.2514228969297	3.52791725443036	3.24262003999042	3.34942315546651	3.04611570364717	3.00140371681565	3.42750537448532	-0.459644674059219	0.422395254761059	0.714675220201037
Merged-chr3-16021313-3	chr3	16021212	16021412	+	873.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D5|LTR|ERVK	-14980.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	3.47422430679777	3.68230797623145	3.83847559572374	3.91433115273161	3.5069460074452	3.52734353700715	3.72883395431386	3.47293131198674	-0.586374410673919	0.237329444232277	0.547509966649681
Merged-chr2-145699853-4	chr2	145699742	145699942	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1353.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	5.76170636177339	5.77546987674815	5.15175629231293	6.15631655546258	5.75279288153502	5.78419104594457	5.8919609708842	5.70910503427116	0.00609378192034098	0.984312046254791	0.994299885620597
Merged-chr8-56304273-3	chr8	56304152	56304352	+	684.8222049999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 3 of 6)	L1_Rod|LINE|L1	9700.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	3.45768455730219	3.539614354459	3.26376004387477	4.08520313259862	3.58068060372301	3.51078392226361	3.66434462245111	3.86579671694978	0.0578152966909131	0.918727674396746	0.970112625083531
Merged-chr13-37559796-2	chr13	37559696	37559896	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	214451.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	2.3808420386206	2.29602064866035	2.38116321858782	1.97266941454301	2.38920803547437	2.1234702337067	2.09767941540682	2.37986428012756	-0.0600305037574073	0.941948234773512	0.979016024223816
Merged-chr7-143038738-4	chr7	143038637	143038837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015529, intron 2 of 3)	ERVL-B4-int|LTR|ERVL	-14013.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	6.18011622647867	6.52906791734135	5.93725856881416	5.94179251004577	6.52939429145857	6.41621235223907	6.41935192593699	6.1358036706512	0.336156112231813	0.188345415229589	0.486932962030616
Merged-chr6-136938866-4	chr6	136938771	136938971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301301, intron 1 of 5)	intron (NM_001301301, intron 1 of 5)	656.0	NM_001301303	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	5.80030695313894	5.7403107191717	5.61365848061079	5.08430381648639	6.33654480287804	6.59342720689309	6.07830214759116	6.00380890837517	1.1215860187475	0.000142563104893236	0.00273370130474022
Merged-chr6-47175810-4	chr6	47175707	47175907	+	845.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 20 of 23)	intron (NM_001004357, intron 20 of 23)	-68589.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	4.11770548144515	4.16589877890178	4.46865265886691	4.09380300303455	4.32105816475479	4.24391723283026	4.40912066227833	4.42689910344025	0.34750472983417	0.373553818752752	0.677113210162732
Merged-chr5-73564663-3	chr5	73564536	73564736	+	852.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	67785.0	NM_153568	231296.0	Mm.168948	NM_153568	ENSMUSG00000067206	Lrrc66	-	leucine rich repeat containing 66	protein-coding	3.81790045968387	3.70808325912599	3.5608950908085	3.70190664718259	3.72726584450517	3.61716420044967	3.54782042328024	3.7688740711651	-0.090610610676001	0.846318391609975	0.941927981530162
Merged-chr3-27153932-4	chr3	27153825	27154025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177626)	promoter-TSS (NM_001177626)	-47.0	NM_001177626	13605.0	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536	ect2 oncogene	protein-coding	8.77621666346379	9.01392172434095	8.66053052014254	8.91494493697404	8.86819727174421	9.03187984204976	8.99791870619466	8.58494372817374	0.0379596917745993	0.822887190741507	0.932185203682946
Merged-chr17-35193182-4	chr17	35193086	35193286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1321.0	NM_008518	16994.0	Mm.1715	NM_008518	ENSMUSG00000024399	Ltb	AI662801|LTbeta|Tnfc|Tnfsf3|Tnlg1c|p33	lymphotoxin B	protein-coding	6.51598672105482	6.37592522656069	6.45718638923937	6.02633941654586	5.73665262615285	6.10749899084699	5.52503240785996	5.66830501426877	-0.896820186317939	0.000971075346810413	0.0131207616003452
Merged-chr10-95703213-7	chr10	95703113	95703313	+	967.8639529999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139067.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	4.15985748991128	3.69661629326621	4.23785683112875	3.69124839959982	3.83950499925958	3.74097213888517	3.82847252946446	3.67910789878388	-0.522944044666864	0.279798888339028	0.591853636978245
Merged-chr11-83593647-4	chr11	83593547	83593747	+	903.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009139)	promoter-TSS (NM_009139)	-560.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	4.58051847866237	4.68827135166022	4.49496853955237	4.92713947404632	4.82881536919102	5.01384321672517	4.43006669780334	4.44686405975461	0.0158463158064495	0.966968298825997	0.988422847203028
Merged-chr2-59121236-4	chr2	59121145	59121345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	MTE2a|LTR|ERVL-MaLR	39438.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	5.11443984476005	4.91215711653947	4.86808233145638	4.90842798927624	4.90679542799273	5.18956767482393	5.15226060965423	5.4473520270318	0.439517267085781	0.169091228240183	0.46161486940974
Merged-chr4-123917979-4	chr4	123917857	123918057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017475, intron 1 of 6)	CpG	524.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	4.91089017321015	4.85896327613776	5.0192785103927	5.06878840157549	5.24028506132768	4.84539294796031	5.3230554141092	5.29253531602118	0.418629736920118	0.184628452926912	0.48221017373939
Merged-chr11-98962915-2	chr11	98962815	98963015	+	855.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001176528, intron 1 of 7)	intron (NM_001176528, intron 1 of 7)	-1957.0	NM_001361954	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	3.20026852693883	3.15652103456736	3.58482421779456	3.24153956608941	3.43003955192458	3.31261671661155	3.42010103285713	3.48427358121571	0.398729017201937	0.450304848496189	0.735244501791766
Merged-chr2-11005929-3	chr2	11005831	11006031	+	683.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-166451.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	3.02277586035354	3.29762836289791	3.69872946725603	3.36500218281394	2.62414827974526	2.68776141915695	2.88063240207112	2.74145439463918	-3.1828784697459	5.05214147390621e-05	0.00114197007929873
Merged-chr15-97942742-4	chr15	97942666	97942866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-21463.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	6.12426529824446	6.02398611955756	5.86471543840152	5.94205754392983	6.09654223895839	6.23955211311173	5.70908366025157	6.01892098144306	0.0657988946159905	0.792204385985046	0.919529637982968
Merged-chr2-132264138-4	chr2	132264065	132264265	+	870.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	1017.0	NM_138651	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	3.61123732795619	3.53664963969016	3.87220360930498	3.85801199503932	3.85053029046658	3.94464197803414	3.41547178100195	3.96062879635983	0.225846099774701	0.647169733300948	0.851605116430591
Merged-chr2-140783578-3	chr2	140783483	140783683	+	949.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	-112107.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	3.72707314657909	3.82961484104015	4.04268804470474	4.08223421220849	3.5027247901212	3.27625153258756	3.43146219223389	3.61913279442863	-1.49274558971467	0.00357337918223006	0.0366497920478319
Merged-chr5-66091547-2	chr5	66091447	66091647	+	997.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	6632.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	3.22724411238757	3.46952981550987	3.0175556250801	3.09861681618181	3.45913350301897	3.58260524262468	3.50340219359096	3.79535090324461	1.29969405711587	0.0156568293751923	0.108071902453143
Merged-chr8-83333273-1	chr8	83333173	83333373	+	605.5	f0_balb.idr	promoter-TSS (NM_001170691)	promoter-TSS (NM_001170691)	-787.0	NM_178736	244548.0	Mm.38762	NM_178736	ENSMUSG00000035151	Elmod2	9830169G11Rik	ELMO/CED-12 domain containing 2	protein-coding	3.32191053687878	3.24510809698533	3.15363501950326	3.29029973408364	3.11781853246679	3.06679668312028	3.14264856326257	3.32050735538959	-0.355227549044795	0.516653792654455	0.778349451006108
Merged-chr17-84191069-4	chr17	84190929	84191129	+	964.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_183021, exon 38 of 38)	3' UTR (NM_183021, exon 38 of 38)	-3082.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	4.48637418758371	4.50679663073823	4.68039682897672	4.50293806987948	4.50782299736441	4.4841567623421	4.62203534761539	4.30564923473854	-0.126215065107552	0.727063719787892	0.89133085313418
Merged-chr4-116202953-4	chr4	116202858	116203058	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-18458.0	NM_001355585	18710.0	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55|p55pik	phosphoinositide-3-kinase regulatory subunit 3	protein-coding	4.9762248346212	5.0251043885873	4.40417828169703	4.59818403476665	4.70989869138439	4.20854559780262	4.78994682794473	4.73802769411405	-0.289063952612824	0.464321726941818	0.745358837238485
Merged-chr18-80196354-4	chr18	80196250	80196450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199197, intron 3 of 5)	Charlie1a|DNA|hAT-Charlie	4269.0	NM_199197	68731.0	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	7.84340196043872	8.01049508929588	7.89042008752414	8.2485572544628	8.00469838015331	8.28078826320384	8.21842762310244	8.1040916442815	0.171193492961835	0.334369025038691	0.644970402786618
Merged-chr2-157737347-4	chr2	157737225	157737425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025680)	promoter-TSS (NM_025680)	-76.0	NM_025680	66642.0	Mm.45193	NM_025680	ENSMUSG00000027649	Ctnnbl1	5730471K09Rik|NAP|NYD-SP19|P14L	catenin, beta like 1	protein-coding	6.90689047059826	7.24924036667463	6.89433662839138	7.03688116629927	7.1032321185833	7.38714569671489	6.91337581502577	7.19489435417502	0.169361079070384	0.408910744488722	0.704742321597161
Merged-chr3-87359488-4	chr3	87359388	87359588	+	946.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 1 of 5)	intron (NM_009690, intron 1 of 5)	1607.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	5.16972656477204	4.9776331750615	5.17063702765547	4.93544956039589	4.37908922890555	4.19116227089554	4.47601856901607	4.8210349100362	-1.21898420347457	0.00099638121425528	0.0134016285807779
Merged-chr7-126770987-4	chr7	126770893	126771093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024228, exon 8 of 10)	exon (NM_024228, exon 8 of 10)	4579.0	NM_024228	68616.0	Mm.246881	NM_024228	ENSMUSG00000030703	Gdpd3	1110015E22Rik	glycerophosphodiester phosphodiesterase domain containing 3	protein-coding	6.74516110069263	7.01407807354647	6.46350675812963	6.35613775729856	6.05096014281529	5.98055059584444	6.15244684955465	6.33622966001569	-0.786966393551343	0.00211078108151149	0.0243782713939488
Merged-chr12-112644761-4	chr12	112644678	112644878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161737)	promoter-TSS (NM_001161737)	-50.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	8.90335939472364	9.22061442974384	9.14269275339842	9.15189888238297	9.25928231834961	9.35276572327224	9.3398939041277	9.13708782675733	0.200395948786172	0.176288202576602	0.471307205534908
Merged-chr6-148530467-1	chr6	148530367	148530567	+	591.0	f1_balb.idr	Intergenic	Intergenic	83842.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	2.8793280247554	2.93395058184791	2.87968235456401	2.81498485790835	2.82858476564626	2.85728426402357	2.98409372060651	2.68191870737648	-0.147323393564434	0.809919309266488	0.92673441581447
Merged-chr1-9799143-4	chr1	9799061	9799261	+	927.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177547, intron 1 of 16)	intron (NM_177547, intron 1 of 16)	1031.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	4.40910179230043	4.56568747787138	4.32009393759423	4.37938130203263	4.39303382137785	4.29969148504976	4.51245661629488	4.74640616427969	0.173953015958496	0.642470212235846	0.849202191913526
Merged-chr18-9828162-3	chr18	9828058	9828258	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	120510.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	4.89704986980385	4.66376985841173	5.17621895801639	5.34787149691678	3.64090101563934	4.12026467723895	4.03140300531944	3.78854566729681	-2.92183801551401	3.52662098642116e-10	2.47555577112891e-08
Merged-chr11-80169347-3	chr11	80169251	80169451	+	867.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 6 of 10)	intron (NM_172133, intron 6 of 10)	-14521.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	3.58422347141047	3.2978468871504	3.10325907891915	3.00534340548537	3.50075582170186	3.65244121709993	3.35265789240131	3.81209163186027	1.13199952994552	0.041046445341739	0.204912675899821
Merged-chr1-152554334-4	chr1	152554229	152554429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001346119, exon 6 of 18)	exon (NM_001346119, exon 6 of 18)	70888.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	7.13369050998483	7.41739335637748	7.13492881624733	7.39220334534075	7.09944691457982	6.87235252947427	7.00274175890024	7.34321415634033	-0.261016629238975	0.196710089154076	0.497853343617479
Merged-chr3-106568701-1	chr3	106568601	106568801	+	708.0	f0_balb.idr	intron (NM_001025582, intron 5 of 6)	Lx7|LINE|L1	-20899.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	3.53746672222391	3.30706127774206	3.58844256963027	3.47417209229113	3.03725489605024	3.48834789412083	3.52312585083975	3.42877681900978	-0.355205604588675	0.513425756208409	0.77646733267772
Merged-chr2-32509467-4	chr2	32509375	32509575	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25884.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	5.08067269213315	4.99926903972529	5.32583607182563	5.13528380279174	4.98888712432693	5.0396088672951	4.98821780731739	5.45349335660364	-0.018167130445612	0.954308638738007	0.98373809489276
Merged-chr2-122143968-4	chr2	122143858	122144058	+	754.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026251, intron 2 of 17)	MTD|LTR|ERVL-MaLR	-3729.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	3.65825079238289	3.52287655911693	3.85579801259805	3.54336728717302	3.63701405550101	3.47625112155254	3.64399691830099	3.98299810828262	0.166631613745013	0.733666165901077	0.894604173479165
Merged-chr4-119177928-3	chr4	119177815	119178015	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013848, exon 13 of 13)	3' UTR (NM_013848, exon 13 of 13)	-3720.0	NM_001145936	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	4.23401065952558	3.9811886279906	4.30228324823034	3.50143738493096	6.81653220937031	6.47376883689813	7.0996422701126	6.72283855271309	5.37416889311477	1.75374806528122e-50	2.49660067077305e-46
Merged-chr6-42693068-4	chr6	42692970	42693170	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029930)	promoter-TSS (NM_029930)	30.0	NM_029930	77574.0	Mm.24652	NM_029930	ENSMUSG00000036667	Tcaf1	2810407D09Rik|3321401G04Rik|A230020K05Rik|AI848529|Fam115a	TRPM8 channel-associated factor 1	protein-coding	5.62994407146983	5.85075262959239	5.86231478726908	5.88654173293655	5.12538318461872	5.32238137846787	5.38238256834522	5.37498007344858	-0.901999747815698	0.000968351747403352	0.0130963916071486
Merged-chr11-6586833-4	chr11	6586730	6586930	+	882.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146014, intron 4 of 9)	ORR1G|LTR|ERVL-MaLR	19224.0	NM_001081652	192950.0	Mm.337771	NM_001081652	ENSMUSG00000041073	Nacad	D230024G13Rik|mKIAA0363	NAC alpha domain containing	protein-coding	4.79730883146135	4.48849400593372	4.41533507243678	4.84052652777244	4.41502089277822	4.40216089661325	4.48123653174776	4.45644132704392	-0.500420300136294	0.178431433058696	0.474273534250155
Merged-chr1-172513564-4	chr1	172513471	172513671	+	861.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7559.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	3.81841694113372	3.81867368249288	3.76237828831138	3.7382118747864	4.05998154348452	4.14802396433776	4.22073286045889	4.27714916102186	1.06715769319538	0.0103148325098556	0.080778904524041
Merged-chr14-51026925-3	chr14	51026829	51027029	+	780.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14938.0	NM_183032	328401.0	Mm.99528	NM_183032	ENSMUSG00000052382	Rnase9	ESRL|Rak1	ribonuclease, RNase A family, 9 (non-active)	protein-coding	4.37519406994061	4.39248576654006	4.10534022866287	4.29934324573143	4.63552441037858	4.17850525879163	4.08828446434344	3.99877126109389	-0.0765072342418927	0.858172817932306	0.946523328544257
Merged-chr16-33077269-4	chr16	33077176	33077376	+	890.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172823, intron 6 of 16)	intron (NM_172823, intron 6 of 16)	14755.0	NM_172823	239833.0	Mm.131951	NM_172823	ENSMUSG00000022802	Lmln	5330415H22Rik|AI465495	leishmanolysin-like (metallopeptidase M8 family)	protein-coding	4.83386022849849	4.4822122940157	5.26661816062937	5.18981952825942	4.44781446840211	4.51868635484613	4.21425625657458	4.28269124769441	-1.32703822078838	0.000925734715008356	0.0126522410291052
Merged-chr16-10416239-4	chr16	10416108	10416308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011955, intron 3 of 10)	intron (NM_011955, intron 3 of 10)	4270.0	NM_011955	26425.0	Mm.29037	NM_011955	ENSMUSG00000022503	Nubp1	-	nucleotide binding protein 1	protein-coding	5.56673814763312	6.46239611406431	5.86562660131619	5.97297303095608	6.32249983274763	5.99356376582507	5.92837268857989	5.93191524444457	0.0772032876254891	0.790819596482747	0.918885370783943
Merged-chr1-173978970-3	chr1	173978869	173979069	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008327, intron 1 of 6)	Lx3_Mus|LINE|L1	3875.0	NM_008327	26388.0	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	5.27660632814774	5.371533674981	5.01715378501719	5.0393188920039	3.40941995651082	3.74505449798281	3.94770698569157	3.68638921456763	-4.29161224745138	5.89204079458423e-14	8.0497038717411e-12
Merged-chr11-82526306-4	chr11	82526207	82526407	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107046.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	4.16031807865713	4.18458874746122	4.76593668790583	5.31485360453169	4.55853742126455	4.11417129452771	4.29715920603914	4.861918051795	-0.472003634281334	0.344354897781814	0.652873698671171
Merged-chr10-5806030-4	chr10	5805905	5806105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025995)	promoter-TSS (NM_025995)	-540.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	8.90168138214346	8.90513461063285	8.88796687115108	8.78698234081848	8.99168403143862	8.93802185876604	8.85568097289202	8.71619819650029	0.016128911434318	0.912039340740966	0.967118042908353
Merged-chr9-66832630-4	chr9	66832519	66832719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026674, intron 2 of 5)	intron (NM_026674, intron 2 of 5)	2087.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	6.62792618701269	6.9840288908944	6.62909457007759	6.57244603610473	7.21031482269985	7.05544289692147	6.78988053609768	6.9263909354807	0.421952038441286	0.0513135166218185	0.235140977250011
Merged-chr17-47600664-2	chr17	47600564	47600764	+	823.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081636)	TTS (NM_001081636)	7197.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	2.55896462787047	2.47216435131284	2.55929364063799	2.30727212055905	2.52548437653052	2.38762145261394	2.48771959013635	2.42895218051345	-0.0520135528888651	0.94097922155718	0.978676631829834
Merged-chr15-100669565-4	chr15	100669476	100669676	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001270537)	promoter-TSS (NM_001270537)	-76.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	4.70973630007798	5.05042440516145	4.71048416272333	4.86138873806056	4.97630384474814	4.84584556426527	4.8793021233488	5.26783314720471	0.312336032026031	0.347603348178653	0.655546119710951
Merged-chr1-182991132-3	chr1	182991033	182991233	+	746.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36345.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	3.72046172737236	3.8589077538621	3.5583832761407	3.54671737756179	3.80147989877826	3.41886747261036	3.97588242800827	3.55652543901758	0.114592937448745	0.81811715560334	0.930206079976521
Merged-chr19-56546186-2	chr19	56546086	56546286	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153440, intron 2 of 9)	intron (NR_153440, intron 2 of 9)	1936.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	3.0774800097212	3.30436122962592	2.87746994167587	2.90214295647592	2.93885137507554	3.25124825402832	3.12655602373352	3.40290363940404	0.541556423663998	0.364937986840703	0.669647618330358
Merged-chr11-87433132-4	chr11	87433035	87433235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 1 of 30)	ORR1C2|LTR|ERVL-MaLR	5544.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	7.44659547337048	7.37876247853234	6.83844584997449	7.36420744988541	7.29305665979177	7.43480439033101	7.4109701099058	7.19752904587994	0.0694845519916418	0.735106948379514	0.895431262597044
Merged-chr7-80092633-4	chr7	80092534	80092734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001146000, exon 6 of 6)	3' UTR (NM_001146000, exon 6 of 6)	-17377.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	6.52176781301481	6.27111926791455	6.47572469611712	6.5036260244467	5.92052890317016	6.07443836555248	6.11624204180826	6.37104487581674	-0.492261559784242	0.0354623967637913	0.186934602625335
Merged-chr2-119618590-4	chr2	119618488	119618688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042653)	promoter-TSS (NM_001042653)	-83.0	NM_001042653	70645.0	Mm.246412	NM_001042653	ENSMUSG00000072980	Oip5	5730547N13Rik|Lint-25|Ms18b	Opa interacting protein 5	protein-coding	7.76742629506696	7.96830612055475	7.65149628482936	7.73047792479093	8.13122444848181	8.16561496527796	7.85966647935938	7.81818346717525	0.285837914444861	0.109662600506793	0.365647920939134
Merged-chr19-6871803-4	chr19	6871702	6871902	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13591.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	4.8632081012788	5.4127785428054	4.70566763721293	4.60795567967092	5.14355780752889	5.38888162264972	4.8411685569187	4.86080375554575	0.284047202148497	0.45456713584436	0.738370105894031
Merged-chr10-14017904-4	chr10	14017794	14017994	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	51515.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.46007979248455	4.95223210724543	5.14911240365389	4.37870907945641	4.97541838100132	4.88266626073642	4.02098602197313	4.15301231618061	-0.404618574953471	0.402303243447391	0.69987042232112
Merged-chr1-74304076-4	chr1	74303979	74304179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027154, intron 1 of 11)	CpG	257.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	6.39836840109076	6.65194070280623	6.82715145167109	6.19035679729761	6.26043151853883	6.28191704488962	6.2571060655783	6.34106855596988	-0.358329965880837	0.142730070418375	0.420539104326084
Merged-chr16-43405302-4	chr16	43405207	43405407	+	790.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	MIR|SINE|MIR	14889.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	4.08952488325685	3.96026364619227	3.85171443069548	4.31932899632091	3.94326907307139	3.67656723010172	3.72844066246309	3.99765913643449	-0.642182844470564	0.163990597551174	0.453904654629629
Merged-chr11-102578875-4	chr11	102578778	102578978	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040286, exon 2 of 3)	non-coding (NR_040286, exon 2 of 3)	241.0	NR_040286	100040792.0	Mm.277966	NR_040286	ENSMUSG00000078640	Gm11627	-	predicted gene 11627	ncRNA	6.02661336989193	5.51412374233108	5.21602881228612	5.24854096493621	5.76094935799243	5.66870110144169	5.15589795222108	5.27948906164947	-0.0653276163953232	0.848459355328016	0.942768700327636
Merged-chr5-21213978-4	chr5	21213880	21214080	+	971.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 5 of 26)	intron (NR_153365, intron 5 of 26)	27713.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	5.45167089470975	4.97134887470364	4.98270103691946	5.21641644644069	5.14018164206613	4.70198590486665	5.06042894028041	5.01442212193633	-0.330077652442022	0.317389636971423	0.629303605918758
Merged-chr5-61846074-2	chr5	61845974	61846174	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37231.0	NM_019468	14380.0	Mm.347430	NM_019468	ENSMUSG00000089992	G6pd2	G6pdx-ps1|Gpd-2|Gpd2	glucose-6-phosphate dehydrogenase 2	protein-coding	2.69377330111336	2.61980549601302	2.55309144039839	2.90304144856548	2.95784473018607	2.86454318461729	2.86967181935517	2.81996800730235	0.766374215746712	0.245985285318068	0.557185390346692
Merged-chr17-69199929-6	chr17	69199829	69200029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	40573.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	5.03674824518843	5.14459507225325	5.13720103688552	4.98350796822829	5.09627288249131	5.02952314921427	5.11203983224541	5.31185188660436	0.134705113149786	0.654930211590495	0.855771148268896
Merged-chr3-9034685-4	chr3	9034580	9034780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27284.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	6.10864638997866	5.81410640661998	6.0084669616422	6.22509100031717	7.58901603178038	7.31115549238391	7.88280825194061	7.44615815348848	2.11609492223046	7.61267953078631e-20	2.49706413051539e-17
Merged-chr18-66270834-3	chr18	66270746	66270946	+	942.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178793, intron 2 of 10)	intron (NM_178793, intron 2 of 10)	20992.0	NM_178793	320924.0	Mm.442049	NM_178793	ENSMUSG00000046318	Ccbe1	4933426F18Rik|9430093N24Rik|mKIAA1983	collagen and calcium binding EGF domains 1	protein-coding	3.79634851491466	3.94570624543487	4.03710752255976	4.0495797177827	3.58036381859693	3.86243921693091	3.61490237817966	4.03456325745855	-0.535722338928463	0.249016329740321	0.560207151982062
Merged-chr3-27226978-4	chr3	27226868	27227068	+	885.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	43964.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	4.02521151746692	3.77380155060824	3.74158051577945	4.0763686213874	4.8394188825525	4.20235152861721	4.36098264640873	4.07360545503698	1.2220013424859	0.00781288337408686	0.0660819106165679
Merged-chr13-113494927-2	chr13	113494827	113495027	+	896.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	7917.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	2.58078248501325	2.64761738876771	3.02753608508469	2.76414655266817	2.80410955384398	2.9629094688311	2.90356612902816	2.9131985293531	0.586290766336517	0.356273946282456	0.662747123269611
Merged-chr7-19577492-6	chr7	19577359	19577559	+	815.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022409, exon 1 of 3)	exon (NM_022409, exon 1 of 3)	172.0	NM_022409	63872.0	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	3.23689469237835	2.9544972812213	3.56558375890482	3.08546662494077	3.40984387988352	3.35197391728999	3.22556939897945	3.74244958953001	0.781692203957808	0.176092923600298	0.471068221483845
Merged-chr4-116176581-4	chr4	116176484	116176684	+	849.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3212.0	NM_001099295	67323.0	Mm.45442	NM_001099295	ENSMUSG00000078593	1700042G07Rik	-	RIKEN cDNA 1700042G07 gene	protein-coding	4.18985571811007	4.49167596556	4.32981134544077	3.92445863292234	4.12967802480213	4.77429871474652	4.35297136752633	4.37029985089564	0.429274019199103	0.31423847022387	0.626303588947018
Merged-chr3-96594199-4	chr3	96594101	96594301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293701)	promoter-TSS (NM_001293701)	-20.0	NM_001293701	69870.0	Mm.292739	NM_027241	ENSMUSG00000028104	Polr3gl	2010003I19Rik	polymerase (RNA) III (DNA directed) polypeptide G like	protein-coding	6.83944908214067	6.94193656506268	6.41073423719438	6.67066275317662	6.7652741771985	6.84408252140881	6.85850977833637	6.80854569078189	0.122751356093106	0.56220820319213	0.805471150416904
Merged-chr12-28635935-4	chr12	28635807	28636007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011300)	promoter-TSS (NM_011300)	46.0	NM_011300	20115.0	Mm.279839	NM_011300	ENSMUSG00000061477	Rps7	Mtu|Rps7A|S7	ribosomal protein S7	protein-coding	6.9753057319692	7.35312474085091	6.43131650709025	6.59027437205929	7.2126813159652	7.15329948540484	6.87655681803002	7.08049124378944	0.280994526456506	0.268434687280343	0.580131084080006
Merged-chr11-3158787-4	chr11	3158726	3158926	+	983.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 10 of 32)	B1_Mur1|SINE|Alu	34637.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.04227308018916	4.58610153366283	5.06852395313565	4.65425990994406	3.44423025376314	3.72237630710613	3.78881243798649	3.80155290694076	-3.27745033074434	2.17710945070505e-10	1.58203138061933e-08
Merged-chr17-24170888-4	chr17	24170806	24171006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1228.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	7.17909941387924	7.07167169685318	7.35945269506483	7.24815061794204	6.52273756292423	6.73390931126107	6.7746417727148	6.63540502034602	-0.776311657562796	8.44254908851973e-05	0.00176176151905863
Merged-chr7-141467392-4	chr7	141467282	141467482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009842)	promoter-TSS (NM_009842)	20.0	NM_001111049	12476.0	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	5.78534264639914	5.55535532540624	5.6905611241522	5.14891201268842	5.55325227758459	5.9132183345789	5.84521850060004	5.58293685160963	0.305251685437426	0.304725184401113	0.617263835068922
Merged-chr8-85025203-3	chr8	85025104	85025304	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357202)	promoter-TSS (NM_001357202)	83.0	NM_001357203	56495.0	Mm.41475	NM_019652	ENSMUSG00000052456	Asna1	1810048H22Rik|ArsA	arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	protein-coding	5.56426892013741	5.31710797239018	4.70848591932041	4.44484639501568	4.78225553521957	4.8027877084256	4.7275248076474	4.97084493179563	-0.504965508611743	0.218690092237281	0.525954253120606
Merged-chr1-138291606-1	chr1	138291506	138291706	+	760.0	f0_balb.idr	Intergenic	Intergenic	17868.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	3.71948263039253	3.70630775458027	3.61340632998937	3.56221391485916	3.52725356618876	3.9863464550834	3.75408001578009	3.55477896112251	0.199213286617386	0.677608660948345	0.867764888703673
Merged-chr4-149706201-4	chr4	149706152	149706352	+	801.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-4623.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	3.62065731041593	3.64958360576497	3.79362865559644	3.40777928046316	4.07928300302791	4.25189787041057	4.1056317435029	3.99085530250413	1.43721430566491	0.00123511651233015	0.0159322867399688
Merged-chr17-40790037-4	chr17	40789950	40790150	+	961.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204071, intron 4 of 9)	MLT1D|LTR|ERVL-MaLR	4096.0	NM_001204071	22024.0	Mm.1296	NM_009420	ENSMUSG00000023930	Crisp2	CRISP-2|GAPDL5|Tpx-1|Tpx1	cysteine-rich secretory protein 2	protein-coding	5.62325791112747	5.04103772584955	5.54698773903692	6.08961313812706	5.46847290723091	5.04824191768459	5.69109338440215	5.3422592054362	-0.400596504382478	0.256207779988741	0.567812876264657
Merged-chr19-21476977-4	chr19	21476878	21477078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4317.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	6.36756766267193	6.41052688811063	6.74266999543825	6.71220666482294	6.0018320267134	5.93362549143629	5.66570756014402	6.25494967590705	-0.897592843149648	0.000354417417116337	0.00580867541628453
Merged-chr1-7394265-4	chr1	7394177	7394377	+	905.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	305357.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	3.77804585715157	3.78035689553673	3.93356952282187	3.94584253749396	3.97442728677863	3.89838352247543	4.25235994155975	3.77649780675373	0.333776749689764	0.451828810793239	0.736277967483341
Merged-chr10-121375458-4	chr10	121375364	121375564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 3 of 13)	intron (NM_029364, intron 3 of 13)	10374.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	7.28017800039144	7.25610022252928	7.40457004704454	7.57828639440978	7.56865711121968	7.05681892344099	7.60645333416701	7.31874263456178	0.0251184686918338	0.902562035126115	0.963848753135321
Merged-chr16-45786897-4	chr16	45786810	45787010	+	911.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357078, intron 5 of 16)	intron (NM_001357078, intron 5 of 16)	-43955.0	NM_172511	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	4.48540972234868	4.98926483929674	4.65305615434958	4.55612344955558	4.78707957839876	4.57158964853937	4.66955810929181	4.56936690359446	-0.0507465938836437	0.8883859855023	0.958170612082543
Merged-chr18-62250299-4	chr18	62250154	62250354	+	752.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70154.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	4.3769294758682	4.53442486354448	4.33364979228202	4.38878073666992	4.4068419030666	4.26691482221943	4.55545982415011	4.3309826220332	-0.0334001706508926	0.928589097596341	0.974077715390317
Merged-chr15-9094182-3	chr15	9094076	9094276	+	784.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040395, intron 6 of 12)	MLT1F1|LTR|ERVL-MaLR	22916.0	NM_001040395	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	3.28994687142972	3.12636823513941	3.3470626876724	3.57275658022414	3.11958708793053	3.14473145420097	3.3340566740659	3.54926889378221	-0.207900845570629	0.714380242029094	0.885790916272019
Merged-chr11-106742437-4	chr11	106742354	106742554	+	908.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8772.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	4.59335911974144	4.35447197255332	4.43867433209655	3.65952083388613	4.77668783789862	4.3426425466162	4.49719131235663	4.21094023693938	0.417233436777018	0.368423421796291	0.672824577689815
Merged-chr13-117048598-4	chr13	117048503	117048703	+	984.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1N2|LTR|ERVL-MaLR	-23087.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	5.62332775660085	5.87579766541059	5.85560624079214	5.63009874599162	5.50420501314635	5.16117127315631	5.57030479069611	5.09382225861114	-0.666260713558205	0.0224500184284315	0.138352368979855
Merged-chr19-7581298-4	chr19	7581204	7581404	+	867.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362425, intron 4 of 4)	MTEa|LTR|ERVL-MaLR	23819.0	NM_001362425	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	4.44197060480385	4.6025719926991	4.63137996375934	4.48600978689625	4.07757204130478	4.19277770402647	4.15416954511031	4.35577618874549	-0.836812368010108	0.0299004894414952	0.166875241017777
Merged-chr4-116668440-4	chr4	116668355	116668555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16781.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	7.27038009264859	6.80734505676855	7.09328472397751	6.94238762368373	7.08315728160385	7.45850003592947	7.25582061180911	7.30741359697343	0.334739129426782	0.0993398678166938	0.345698779546257
Merged-chr7-89941217-4	chr7	89941092	89941292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291288)	promoter-TSS (NM_001291288)	12.0	NM_001291289	67669.0	Mm.28679	NM_026304	ENSMUSG00000062797	Hikeshi	0610007P06Rik|1110002N09Rik|l(7)6Rn|l7Rn6	heat shock protein nuclear import factor	protein-coding	7.52587147999352	7.57379888992388	7.31515461698162	7.67708034265941	7.80292037257544	7.89356278007998	7.65464650936827	7.66232273210674	0.286761763403984	0.108743234763857	0.364041895257499
Merged-chr7-30600150-4	chr7	30600032	30600232	+	970.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1223.0	NR_153655	58206.0	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	5.90577153393689	6.04529260765828	6.22589511165979	6.44403050381854	5.25938472590858	4.98273935266909	5.32624659909151	5.01470624112989	-1.72883925982449	4.7536406806771e-09	2.6811362124399e-07
Merged-chr5-112341523-4	chr5	112341422	112341622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153106, intron 1 of 6)	intron (NR_153106, intron 1 of 6)	1518.0	NM_001359388	70118.0	Mm.172947	NM_027323	ENSMUSG00000029346	Srrd	2810002G02Rik|Srr1	SRR1 domain containing	protein-coding	6.71549944648584	6.49400400732196	6.61007287479351	6.69984073165926	6.91465197452485	6.63554184895159	6.6824919503171	6.72640963874336	0.166940867505203	0.418072225986521	0.711628236434313
Merged-chr3-95650757-4	chr3	95650650	95650850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7971.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	7.89405400455448	7.92191257244722	7.96477091412027	7.68306272721348	7.73038085563989	8.02177779882044	7.53417023125086	7.77817032122381	-0.115658738753798	0.527399546336915	0.784361896301674
Merged-chr15-34495314-4	chr15	34495209	34495409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008287)	promoter-TSS (NM_008287)	-2.0	NM_026340	67724.0	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	7.05053163436269	7.18624416363773	6.94884943692045	7.4627934105214	7.20678237429716	7.21616286281093	7.31227477311196	7.03437486050327	0.00311806845578267	0.987963393097541	0.995370064932717
Merged-chr11-99448957-3	chr11	99448853	99449053	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10800.0	NM_023256	66809.0	Mm.28042	NM_023256	ENSMUSG00000035775	Krt20	9030623C06Rik|Ck-20|Ck20|K20|Krt21	keratin 20	protein-coding	3.85539393207224	3.5067818410577	4.5235726503215	4.21142511239171	3.84972523812768	3.68852578432167	3.42340407838702	3.95304662033097	-0.925493285146325	0.0926302198564772	0.332912215054996
Merged-chr2-80025830-4	chr2	80025746	80025946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	13056.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	7.34629796178922	7.50455481136598	7.40716439166054	7.32970308556097	7.49250377885016	7.54468627969388	7.18299594095448	7.04556801285014	-0.0802119915265892	0.683192248043046	0.870271715831715
Merged-chr13-17805365-4	chr13	17805274	17805474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081058)	promoter-TSS (NM_001081058)	-277.0	NM_027118	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	9.01648087688328	9.21686470332204	9.31696529598947	9.17588128398112	8.98513551706257	9.19575789874097	9.27374835885149	9.07473125013632	-0.0633826058721251	0.674443315622508	0.866144208984521
Merged-chr1-39762206-4	chr1	39762105	39762305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41216.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	6.19371886908761	6.04311162609639	6.32667674085123	6.49343620687806	5.86141226764338	6.10925840966077	6.47601010451572	6.44136110296932	-0.0702165512902973	0.789575389798443	0.918515153062961
Merged-chr2-153145516-4	chr2	153145413	153145613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 11 of 12)	L1MB7|LINE|L1	-15788.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	5.76207224081573	5.86712265794497	5.76308624316593	5.41574724338102	5.59204554604845	5.73549868017052	5.4180793935789	5.52852840037524	-0.210993970746492	0.450458251856609	0.735338736614162
Merged-chr17-27119379-3	chr17	27119270	27119470	+	765.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_080553, exon 55 of 58)	exon (NM_080553, exon 55 of 58)	14521.0	NM_026063	67267.0	Mm.272389	NM_026063	ENSMUSG00000024208	Uqcc2	2900010M23Rik|Cbp6|M19|Mnf1	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding	3.34300651174363	3.12473037649229	3.22271326504247	3.46678628125371	3.60042816112387	3.45628952275889	3.43999451406379	3.39799972107589	0.591367629089704	0.26391733527158	0.575977131726361
Merged-chr13-10210908-4	chr13	10210794	10210994	+	891.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 2 of 4)	CT-rich|Low_complexity|Low_complexity	149909.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	3.94015109207014	3.79399467481441	4.22255128875192	4.59261844136884	4.16390491710233	3.8320495155625	3.97563485015234	4.13277938419845	-0.39966090481964	0.404140258884889	0.701309168832404
Merged-chr17-23748266-4	chr17	23748165	23748365	+	857.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015472)	promoter-TSS (NR_015472)	-971.0	NR_015472	638247.0	Mm.382600	NR_015472	ENSMUSG00000097006	9530082P21Rik	E030034P13Rik	RIKEN cDNA 9530082P21 gene	ncRNA	4.13302042238077	4.17069312432188	4.08446226450333	4.20587178956982	4.3511144897464	4.25850499506745	4.20811262436383	4.39176126430155	0.374225382328403	0.333323124138056	0.644122458951585
Merged-chr9-66879700-4	chr9	66879586	66879786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	L1MA4|LINE|L1	40019.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	6.17684603350991	6.16046551096365	5.47778329939638	5.8390072855297	5.69395199272263	5.65596563950403	5.32481792698375	5.38029511803144	-0.681926981798099	0.0221188805456839	0.136987714118266
Merged-chr10-94923467-4	chr10	94923371	94923571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 1 of 30)	intron (NM_018797, intron 1 of 30)	21107.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	6.92855531901078	6.94692495955532	7.35515787664459	7.57940410333789	7.06406642572894	6.65435732036434	7.47357135460857	7.3003473944599	-0.112585263757592	0.659171218938818	0.858145103575869
Merged-chr2-170324912-4	chr2	170324812	170325012	+	999.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-31449.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	4.84558585819795	4.76559641089249	4.84637917025137	4.90626671115754	5.18457859997696	5.05812165046335	4.62066458261636	5.33787662807493	0.46011282564401	0.174606599175971	0.469069910997419
Merged-chr5-140510775-3	chr5	140510674	140510874	+	605.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	intron (NM_021528, intron 1 of 1)	5165.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	3.31679591704153	3.34666949694861	3.25845714341453	3.40798456866421	3.574696167209	3.36967852330444	3.12284255479951	3.37159968045221	0.137024334619713	0.797725419703583	0.921862017583033
Merged-chr18-36320160-4	chr18	36320054	36320254	+	971.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	20053.0	NM_001267796	109169.0	Mm.426423	NM_001267796	ENSMUSG00000110185	Igip	6330403M23Rik	IgA inducing protein	protein-coding	5.65662553331296	5.30232140985597	4.94507729173867	5.43462666916711	5.52906889357206	5.27183531155962	5.17157627571278	5.05569005319567	-0.149948398369731	0.643362217251229	0.849623912535023
Merged-chr3-88087845-3	chr3	88087746	88087946	+	714.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033484, intron 4 of 37)	B2_Mm2|SINE|B2	5795.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	3.30427181599766	3.36697811764951	3.24746851919163	2.96511549332777	3.27471542356416	3.23625186644524	3.44746424569222	3.18599900265563	0.263212282659098	0.63539998595986	0.845714791140972
Merged-chr11-106418836-4	chr11	106418733	106418933	+	973.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023913, exon 10 of 22)	exon (NM_023913, exon 10 of 22)	-36052.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	4.21033520504916	4.79359493856156	4.66434247912185	4.30075595739704	4.63743035781904	4.83653752857948	4.64227464837347	4.80559162275693	0.485026524460506	0.19616178414812	0.497172754375412
Merged-chr2-118730648-4	chr2	118730543	118730743	+	921.8583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2205.0	NM_001290790	18796.0	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	5.12515701959244	4.65216308072357	4.44812491507522	4.79801052134477	4.87887387718934	4.89118700122494	4.97894999558247	5.0000926426552	0.318118497107536	0.357755849038663	0.663866486000028
Merged-chr14-10439557-4	chr14	10439452	10439652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	13906.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	6.25401219165115	5.82868346963942	6.47445569983588	6.53281082858893	6.19810377413739	5.91799142627124	6.06693280414963	5.89038119230431	-0.425618802138371	0.111595371489297	0.369150028864662
Merged-chr4-139310751-4	chr4	139310622	139310822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025337)	promoter-TSS (NM_025337)	-14.0	NM_145384	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	5.71501228543925	6.19587327266723	5.41637542848387	5.97779844102425	5.97283220611525	6.23926488774747	5.83734932444111	6.23109718238146	0.325768347119361	0.252377217839862	0.563645884616847
Merged-chr17-67353622-4	chr17	67353572	67353772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	CpG	787.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	5.18952089486769	5.61190646696848	5.28739667908446	5.0667716370286	5.52976642802078	5.43152175258044	5.02443837210735	5.68072305200662	0.255313676706198	0.424726049329241	0.716421997848382
Merged-chr12-85496989-4	chr12	85496897	85497097	+	996.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	23107.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	4.95008777159699	5.29778527628002	5.34745090231407	4.62415735652767	5.00293053241517	4.71593422538929	5.12394751161699	4.98286489392949	-0.206710436692496	0.567354204210446	0.808229609203301
Merged-chr8-61908651-4	chr8	61908546	61908746	+	987.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5952.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	5.54764877671613	5.13841800924531	5.30037931377437	6.02300308594258	5.23107649429997	5.17171762435519	5.00589346303499	5.09961091304901	-0.78393615062326	0.0220019957904732	0.13653193631611
Merged-chr13-98872668-4	chr13	98872547	98872747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 6 of 23)	intron (NM_178716, intron 6 of 23)	18395.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	5.54787205996389	5.40750418672349	5.87358825453145	5.63493418352123	5.75046406032656	5.32697820569803	4.97068502093301	5.37528227621169	-0.386597294072803	0.22396626505149	0.53210045864795
Merged-chr10-123085491-4	chr10	123085386	123085586	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8981.0	NM_001163025	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	5.27044437069171	4.85179769084399	5.72574591677069	5.64738193057578	4.72495684439699	4.29377368533746	5.15566099420648	4.86425456642082	-1.19093414556049	0.00292829230999379	0.0313668801103157
Merged-chr6-5269308-4	chr6	5269219	5269419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183308, intron 5 of 8)	intron (NM_183308, intron 5 of 8)	-13086.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	6.34163977444841	6.79523516508215	6.50169727786782	6.58335110178647	6.48007485965939	6.50071643916526	6.32893619183127	6.48036462461786	-0.177706813461936	0.418568493667037	0.711957531262122
Merged-chr8-123040278-4	chr8	123040190	123040390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	1994.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	5.70403908534249	5.66963804649171	5.42967868125479	5.84567389573465	5.82082247760383	5.47969986986044	5.85878569610636	5.54318296135082	0.0158756842619085	0.954119056801276	0.983682715111683
Merged-chr13-92274008-4	chr13	92273907	92274107	+	866.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010829, exon 15 of 24)	exon (NM_010829, exon 15 of 24)	-80776.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	3.88641423270071	3.64670028545163	3.93463878531542	3.98704626345839	4.04315517762297	3.60876525032213	4.00681190877864	3.67449162472702	-0.0514609458487643	0.913113861187058	0.967428663410909
Merged-chr19-32278011-4	chr19	32277904	32278104	+	918.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168525, intron 2 of 9)	intron (NM_001168525, intron 2 of 9)	-66991.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	4.68024519889022	4.40695716495661	4.5405690525562	4.68052106297807	4.21541859125229	3.93314749606051	4.13463324726996	4.09836109335842	-1.16559505368386	0.00365961075368693	0.0373351632272727
Merged-chr13-83601952-3	chr13	83601828	83602028	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347569, intron 3 of 10)	intron (NM_001347569, intron 3 of 10)	28321.0	NM_001347569	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	3.84543330315315	3.42935522170544	3.55658261911351	2.78267450185626	5.13466772876186	5.23271119531812	5.31945198644558	4.81354211561134	4.95392196761574	1.12602830185997e-19	3.59415105372605e-17
Merged-chr5-16506864-4	chr5	16506779	16506979	+	899.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46616.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	5.29886172489452	4.79696541056378	5.18491471578029	5.68631526387588	4.4651532133767	4.94041933192223	5.06608082843637	4.67144160745792	-0.962119042584622	0.0113382202252541	0.086287092634808
Merged-chr5-27206408-3	chr5	27206315	27206515	+	892.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207282, intron 1 of 25)	intron (NM_207282, intron 1 of 25)	-55520.0	NM_001136060	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	3.59227957969117	3.49883859017713	3.94963439471192	3.55211233793822	3.3122938250248	3.28378992390825	3.62762860372582	3.1694380392335	-1.00088471141995	0.066957221162613	0.275989057001499
Merged-chr6-140768378-4	chr6	140768295	140768495	+	979.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141510.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	4.93566865756288	4.71556518569664	4.74261354445696	4.48116960217171	5.331185448226	5.18073052969251	5.07959335267404	5.35715252724785	1.05685096353885	0.00101022380368945	0.0135596304210468
Merged-chr6-17800393-4	chr6	17800271	17800471	+	656.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	51201.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	3.61454102788912	3.73247613359075	4.10485749977048	3.70768173468977	3.85545136507333	3.95413286844204	3.71409687620977	4.06147532115042	0.299276075392508	0.517568666919988	0.77894111729988
Merged-chr17-10566660-3	chr17	10566582	10566782	+	753.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	110466.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	3.96603424783709	3.58854126159172	3.96665404546634	4.18341757230951	3.69865503286956	3.4781256828896	3.65798696944997	3.55529339077662	-1.04567040451601	0.0358076205236656	0.187974822719522
Merged-chr12-34683612-4	chr12	34683516	34683716	+	952.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-154727.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	4.22997016218377	4.51567600209193	4.23057582176794	4.44539078275204	4.7681195064975	5.1934478844813	4.84335344626592	4.99122229064181	1.2271367610222	0.000748245094502408	0.0106774935007191
Merged-chr5-122850054-4	chr5	122849954	122850154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030564)	promoter-TSS (NM_030564)	-134.0	NM_030564	80751.0	Mm.388529	NM_030564	ENSMUSG00000029474	Rnf34	AW061037|AW536122|BC004042|C88279|RIFF	ring finger protein 34	protein-coding	8.11178240903816	8.20022077133849	8.11311390726212	7.96148577358495	8.20647106237729	8.30327276169157	8.15964927053783	7.89526522128557	0.0709833486630323	0.674866127916815	0.866393047380978
Merged-chr1-136141679-4	chr1	136141575	136141775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	10285.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	8.27466872661008	8.58724177444479	8.843872848223	8.76857220070622	8.59753672615402	8.47153844065686	8.86687055885203	8.67620780863388	0.0266067458521446	0.884410279335196	0.956563630962721
Merged-chr12-100528503-3	chr12	100528416	100528616	+	692.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7694.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	2.97612386924047	3.05912767729421	2.97651021522054	3.13965089604799	2.7580140625148	2.82614998258411	2.78186378310591	2.72071908991015	-1.28241613417247	0.0416250060975202	0.206627122464286
Merged-chr9-5333619-3	chr9	5333493	5333693	+	767.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007609, intron 7 of 8)	ORR1A4-int|LTR|ERVL-MaLR	-11883.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	3.79526384712137	3.74561065039215	3.79578842529178	3.88330786135661	4.09378719030686	3.68348499711104	3.8314535682515	4.07482649522814	0.362588645477237	0.419411889996266	0.712515966395674
Merged-chr2-181187806-4	chr2	181187701	181187901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151465, exon 2 of 4)	non-coding (NR_151465, exon 2 of 4)	554.0	NM_001356427	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	7.45745173002568	7.34349211292296	7.43951110200994	7.1405147502651	7.58032155506543	7.47359581987359	7.87164728705594	7.53652622293997	0.379074491080069	0.0461338096182488	0.220549293761658
Merged-chr9-106789090-4	chr9	106788987	106789187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030730, exon 1 of 22)	5' UTR (NM_030730, exon 1 of 22)	126.0	NM_030730	81000.0	Mm.246689	NM_030730	ENSMUSG00000040661	Rad54l2	Arip4|D130058C05|G630026H09Rik|Srisnf2l	RAD54 like 2 (S. cerevisiae)	protein-coding	4.91834916601502	5.17258021089222	5.25967348515535	4.6765755867646	5.24248390226081	5.59856543966869	5.23338468770035	5.22578220483607	0.600250606429509	0.0668294469861129	0.275679699045177
Merged-chr19-46501464-6	chr19	46501369	46501569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053100)	promoter-TSS (NM_053100)	-179.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	6.48295253290346	6.48735751128803	6.88481132874695	6.1154918707885	6.26202775401469	6.86153430551496	6.28995084154029	6.60753941254329	0.0194564488283889	0.942394681996318	0.979088236393896
Merged-chr11-119058149-4	chr11	119058047	119058247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17234.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	5.56429709084215	6.06967879332266	5.69142526988063	5.13256952480514	5.48456302390442	5.54149666620277	5.30660044099129	5.39139362020021	-0.366851604619091	0.260165716752815	0.571924258091621
Merged-chr17-48418435-4	chr17	48418334	48418534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009694)	TTS (NM_009694)	7984.0	NM_001357904	106821.0	Mm.203943	NM_207219	ENSMUSG00000040771	Oard1	AI314976|AW558560	O-acyl-ADP-ribose deacylase 1	protein-coding	6.06990791083779	5.87580323779353	6.13030523510995	6.05391005448095	6.06517379885303	5.60651684939651	5.91290091377304	6.00441614169277	-0.182595760048291	0.466389036898919	0.746420287776482
Merged-chr13-12464343-4	chr13	12464237	12464437	+	912.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2599.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	4.20571178344016	4.21068823786351	4.55614292779227	4.329048004593	4.61313392974929	4.22838452098476	4.49621018477308	4.7635325049691	0.489062681303914	0.204914361064536	0.508439338592834
Merged-chr4-126096635-4	chr4	126096544	126096744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138721)	promoter-TSS (NM_138721)	-9.0	NM_001163266	116748.0	Mm.41865	NM_138721	ENSMUSG00000050188	Lsm10	-	U7 snRNP-specific Sm-like protein LSM10	protein-coding	7.55670004361706	7.86798994492624	7.47168327844185	7.44948820432791	7.92192529526335	7.96349622215664	8.0954559777412	7.77304066497183	0.454566326272332	0.0137461649618996	0.0987010488535436
Merged-chr18-60807442-4	chr18	60807328	60807528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042605, intron 1 of 8)	intron (NM_001042605, intron 1 of 8)	3579.0	NM_010545	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	7.80916071473132	8.0067998143947	7.67532826499041	7.7307557616403	7.73759071741152	7.87762040921617	7.50552771308403	7.55594676878635	-0.173718979203031	0.340028279802948	0.649078099444502
Merged-chr16-76364807-4	chr16	76364709	76364909	+	851.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	8240.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	4.24091605904706	4.35526189186049	4.19580240062205	4.17529745641715	4.26003199572366	4.36812989186104	4.03160138483658	4.36694326241432	0.0552302338664797	0.888204268055553	0.95809010253423
Merged-chr5-86069581-4	chr5	86069382	86069582	+	880.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2264.0	NM_019992	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	3.64925833461596	3.6768509063991	4.14608510376672	3.96276733461196	3.98758290830098	4.2292501304554	3.57554849867793	3.96738123531109	0.225155556143546	0.641883699352722	0.848925046283704
Merged-chr3-31130035-2	chr3	31129935	31130135	+	880.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19885.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	3.10118473672456	3.05143967563947	3.22034140242906	2.83120984120504	3.13389694406372	3.08198591047268	3.54849681712872	3.16061758596771	0.761653351113252	0.191592208545255	0.490975870844874
Merged-chr14-76114796-4	chr14	76114696	76114896	+	981.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013745, intron 3 of 9)	intron (NM_013745, intron 3 of 9)	3905.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	5.04902858030109	4.53835865557836	5.18151070860724	5.28146912049627	5.46983027836035	5.08080811027594	5.15591298700961	5.29702499949247	0.396027181895034	0.250184193620128	0.561249063980067
Merged-chr18-62178748-9	chr18	62178699	62178899	+	907.3110960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007420, exon 1 of 1)	exon (NM_007420, exon 1 of 1)	1182.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	4.47536320978734	4.20730073714575	4.19919784594264	3.75811813907585	3.9600370633072	4.18501044698267	3.77242998412316	4.32254813246887	-0.258883991799447	0.580350191478372	0.815718435955212
Merged-chr16-97535124-4	chr16	97535037	97535237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003508)	promoter-TSS (NR_003508)	-944.0	NR_003508	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	7.93243182039839	7.86072518610408	8.04149292544693	8.00285246964708	7.96509926224766	7.84565862516702	7.7780496203194	7.92136290621049	-0.103102038086066	0.521247094013016	0.781255988729258
Merged-chr10-25117779-1	chr10	25117679	25117879	+	846.6666869999999	f0_balb.idr	Intergenic	Intergenic	82391.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	4.02925182973537	3.78116070880143	4.15509857047897	3.78094018091149	3.86192121243863	3.85446988665476	3.87420674879259	3.49159226567145	-0.443512451448913	0.34846794144357	0.656238106962862
Merged-chr4-138972858-4	chr4	138972758	138972958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029857)	promoter-TSS (NM_029857)	-47.0	NM_029857	77056.0	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	5.66965328842654	5.51603835834218	5.36340555063665	5.51155880879629	5.83089836314632	5.57120362909594	5.48473716133715	5.7620015171208	0.270209339064963	0.316992450557226	0.628905690750891
Merged-chr10-80955830-4	chr10	80955737	80955937	+	880.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	25746.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	4.21156911520463	4.74363024273148	4.26318261157779	4.47729659917617	4.66423430343398	4.89121366028177	4.4717532483304	4.44676632143699	0.402096454957849	0.300548285947836	0.612477626586326
Merged-chr7-16294400-3	chr7	16294270	16294470	+	884.9714359999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-7575.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	2.96513044528505	2.75499582345413	2.83563876158	2.72984850502158	3.1540039178393	3.07550641785371	3.07129289120255	3.13704843374504	1.27339324930239	0.0282948004321116	0.161197022567414
Merged-chr10-4341631-3	chr10	4341533	4341733	+	879.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031185, intron 2 of 3)	intron (NM_031185, intron 2 of 3)	45842.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	4.48453189534312	4.63200976939951	4.07002438007937	4.68704029377223	4.05200498446277	4.35086287116252	4.34150864336346	4.35836032768528	-0.539268888432308	0.189182316528064	0.488066531391588
Merged-chr17-12367599-3	chr17	12367494	12367694	+	849.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11015.0	NM_008877	18815.0	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	3.6157955676901	4.47102523179307	3.74376811351873	3.61739276147295	4.27287074260731	4.09332802582022	4.45136200595889	4.11178988435295	0.831641989227907	0.0958597416910218	0.339125276035052
Merged-chr6-122669611-4	chr6	122669523	122669723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37866.0	NM_001289831	71950.0	Mm.6047	NM_028016	ENSMUSG00000012396	Nanog	2410002E02Rik|ENK|ecat4	Nanog homeobox	protein-coding	5.34137059209468	5.48404666470596	4.93637719616574	5.14017466801983	5.23125088518366	5.33082012035966	5.25679188783622	5.50121797324188	0.16646450535519	0.584520717165253	0.817674741209741
Merged-chr13-54687767-4	chr13	54687662	54687862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146025)	promoter-TSS (NM_001146025)	46.0	NM_001146025	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	7.92168218216408	7.99285196728803	7.3884738091754	7.59226963865996	7.99574384057107	8.07923367152883	7.91251013379012	7.86026348791462	0.285830851019459	0.14191210797586	0.419117959155792
Merged-chr7-107661367-4	chr7	107661263	107661463	+	975.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008905, intron 3 of 24)	intron (NM_008905, intron 3 of 24)	-4115.0	NM_001357437	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	5.13185579836885	4.77856438672323	4.56347822761004	4.86299482747033	4.88477250582803	5.07276461795245	5.32920775200866	5.15940528919308	0.517465346950859	0.123994783930027	0.390765284926741
Merged-chr16-20097517-4	chr16	20097420	20097620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029436)	promoter-TSS (NM_029436)	-34.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	7.17727583354098	7.63045597293226	7.50636385146913	7.40139256951702	7.53563642508247	7.69289970464524	7.82939773571156	7.67460934849728	0.321880502709415	0.0836725934022989	0.31448323961449
Merged-chr6-136684282-2	chr6	136684155	136684355	+	885.0	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-22362.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	3.43516872145982	3.32159748213487	3.29763105460806	3.42012725657016	3.91042475768326	3.62079846655067	4.38771832384757	4.13290590105388	1.98573679346121	0.000110395281227823	0.00220354058399192
Merged-chr1-167370073-4	chr1	167370005	167370205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20114.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	6.28294992864646	5.76101386480114	5.55168957979603	6.27911176954157	6.24297609213186	6.4586325227213	6.15917943391985	6.26149106291493	0.399227967561495	0.14989478503129	0.432360854406563
Merged-chr5-123755411-4	chr5	123755298	123755498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042421, intron 2 of 63)	intron (NM_001042421, intron 2 of 63)	5672.0	NM_001042421	208628.0	Mm.441089	NM_001042421	ENSMUSG00000029414	Kntc1	D330012D13|jgl	kinetochore associated 1	protein-coding	5.72356900501268	5.56435911393581	5.48366144973935	5.29153808944565	5.8272170881126	5.87435322744431	5.4851568483386	6.00273477722535	0.50517626665196	0.0701915399656244	0.283663409028171
Merged-chr3-139021917-4	chr3	139021841	139022041	+	901.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 2 of 13)	intron (NM_001356388, intron 2 of 13)	53260.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	5.10937779417473	4.75915419849288	5.19541265696388	4.73956623559628	4.61386376029435	5.15829953157495	4.40746246424924	4.51999917806066	-0.520478944551835	0.176381680398401	0.471362567608772
Merged-chr8-22843821-4	chr8	22843727	22843927	+	765.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-15712.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	3.73683130029536	4.01152906102789	3.85141023799702	4.28623486494683	4.45047271927212	3.8569683141617	3.83637174082178	4.18403662306218	0.296242160242456	0.541116821781287	0.79305195415756
Merged-chr6-40576512-4	chr6	40576412	40576612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021364, exon 6 of 6)	3' UTR (NM_021364, exon 6 of 6)	5124.0	NM_146383	258381.0	Mm.377469	NM_146383	ENSMUSG00000045514	Olfr460	MOR120-2	olfactory receptor 460	protein-coding	7.02093961182042	7.21099009807353	6.82536627453262	7.20886732060012	6.99186510183262	7.01645515430354	6.67213998800481	6.6209864742003	-0.337770537176136	0.116020974229056	0.376814258465732
Merged-chr2-178020938-4	chr2	178020825	178021025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-2359.0	NM_001177400	626848.0	Mm.422604	NM_001177399	ENSMUSG00000074519	Zfp971	Etohi1	zinc finger protein 971	protein-coding	7.44724362072438	7.56195686784777	7.4673380880722	6.86193162318572	7.72897980564255	7.30381437854472	7.60390103701484	7.25997710632803	0.191555881866207	0.405784156224279	0.702456276834042
Merged-chr12-3426779-4	chr12	3426688	3426888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030694)	promoter-TSS (NR_030694)	-41.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	8.37858935486454	8.50247878102979	8.45799172956818	8.3739252652559	8.46435520565614	8.40955473203584	8.75241423874031	8.3363296552348	0.0920042849436836	0.571439250776313	0.810619894194694
Merged-chr13-54758601-4	chr13	54758516	54758716	+	850.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_033610)	TTS (NM_033610)	7979.0	NM_001362407	104069.0	Mm.200843	NM_033610	ENSMUSG00000034891	Sncb	AI838531|betaSYN	synuclein, beta	protein-coding	3.8988302459367	3.74834246779406	3.74500473627514	3.86233691609505	3.89490273296184	4.01996327022159	3.73059508893802	4.03429708362479	0.298759758828636	0.496835880509614	0.766738528256918
Merged-chr9-70009062-4	chr9	70008961	70009161	+	891.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016787, exon 11 of 11)	3' UTR (NM_016787, exon 11 of 11)	-3487.0	NM_001282084	235459.0	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	4.14245784301415	4.48785377138491	4.28493005966552	4.54816260065333	4.49947456074834	4.21683791099366	4.39242137092478	3.98182618015282	-0.216867239607819	0.600583708175813	0.82685105394522
Merged-chr12-52615922-3	chr12	52615822	52616022	+	638.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13600.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	2.66127988998373	2.52875380263197	2.80986616889468	2.63630117961368	3.22271169779531	3.11997458967341	3.40220545158249	3.12079679394909	2.48234949093523	0.000103770346793955	0.0020936138079498
Merged-chr3-159495895-2	chr3	159495795	159495995	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172092, intron 1 of 11)	intron (NM_001172092, intron 1 of 11)	462.0	NM_001172092	76131.0	Mm.371655	NM_029523	ENSMUSG00000028175	Depdc1a	5830484J08Rik|Depdc1	DEP domain containing 1a	protein-coding	3.02325509355971	2.81157066678953	2.96656508987483	2.8582461248655	2.81902313751875	2.74064508718553	2.83467396910651	3.07651450776	-0.178284496124877	0.771589168690998	0.910424181300673
Merged-chr7-64873010-4	chr7	64872896	64873096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023239)	promoter-TSS (NM_023239)	44.0	NM_023239	66647.0	Mm.19944	NM_023239	ENSMUSG00000070520	Nsmce3	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|Ndnl2|mage-g1	NSE3 homolog, SMC5-SMC6 complex component	protein-coding	7.6956939183832	7.68530017947199	7.89928408929557	7.61591759297978	7.55498460560701	7.54112213269731	7.65128353488481	7.6163411619803	-0.172211448466024	0.311366711167834	0.623372743065711
Merged-chr17-56040312-4	chr17	56040222	56040422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013733)	promoter-TSS (NM_013733)	-94.0	NM_013733	27221.0	Mm.391010	NM_013733	ENSMUSG00000002835	Chaf1a	AL023013|AL024058|CAF-1|Cac1p	chromatin assembly factor 1, subunit A (p150)	protein-coding	7.73189310721697	7.93649293814751	7.42146847054787	7.47506973397113	7.86415354888293	7.7510258690819	7.51844195399869	7.43639045426112	0.00439772138107426	0.982836855970365	0.993865312500427
Merged-chr6-57581417-4	chr6	57581311	57581511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025992, intron 1 of 22)	intron (NM_025992, intron 1 of 22)	419.0	NM_025992	67138.0	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	6.9003051962124	6.92111950620254	6.38139047229293	6.7171632252791	7.34290113860939	7.20450704151893	6.94368311157363	6.98653506082695	0.537970631625398	0.0145985305441173	0.102799683484031
Merged-chr5-36698311-4	chr5	36698192	36698392	+	699.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2271.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	3.83754985133092	3.87723402320723	3.51972440939428	3.58637497279528	3.79484769908963	3.69517920940882	3.7741819956584	3.576644337631	0.0236919714902572	0.960148511533726	0.985797898401187
Merged-chr7-142399019-4	chr7	142398891	142399091	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-11121.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	4.10600777960818	3.75935120470588	4.19779584847725	3.77270614327159	4.47079472255282	4.23238376371672	4.17880924428109	4.15043772863018	0.810676762693248	0.0577719905828999	0.252294773771411
Merged-chr13-43725892-3	chr13	43725797	43725997	+	657.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9106.0	NR_046022	622552.0	Mm.375036	NR_046022	ENSMUSG00000110016	Gm20751	-	predicted gene, 20751	ncRNA	3.69481993238389	3.67388991232342	3.79173541241762	3.17357661542035	3.35554027127571	3.81609096352551	3.40510651434525	3.64217642535583	-0.105593792354621	0.846321526991857	0.941927981530162
Merged-chr15-27941240-4	chr15	27941133	27941333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	84615.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	7.40609555151946	7.40000848442986	7.50469979003774	7.61313820721918	7.75126183885355	7.79801837222773	7.61709252878661	7.59848204246072	0.268357997425948	0.121074573946318	0.385349986537515
Merged-chr3-89998719-4	chr3	89998625	89998825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310681)	promoter-TSS (NM_001310681)	-9.0	NM_001282032	23897.0	Mm.256035	NM_011826	ENSMUSG00000027944	Hax1	HAX-1|HSP1BP-1|Hs1bp1|SIG-111|Silg111|mHAX-1s	HCLS1 associated X-1	protein-coding	6.50683345532728	6.32909895164701	5.70588454055541	5.95856594348928	6.67059523358727	6.74599792448028	6.37470691162246	6.6964042097603	0.70327613337068	0.00695363645373737	0.0606336995149543
Merged-chr12-100680226-1	chr12	100680126	100680326	+	589.0	f0_balb.idr	intron (NM_153587, intron 1 of 17)	RMER10B|LTR|ERVL	44894.0	NM_001330702	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	3.23107935867532	3.3350028036421	3.5642620332524	3.36286867544309	3.50969275094236	3.34278736238994	3.33975437745473	3.46064986781474	0.147393780769408	0.774381154496725	0.911820181152855
Merged-chr4-45799052-4	chr4	45798944	45799144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028270)	promoter-TSS (NM_028270)	22.0	NM_028270	72535.0	Mm.331583	NM_028270	ENSMUSG00000035561	Aldh1b1	2700007F14Rik	aldehyde dehydrogenase 1 family, member B1	protein-coding	5.72909110852671	5.8396461583759	5.78141621875265	5.78472388854414	6.07588891430879	5.98238436612968	6.30804003464857	5.82661077542187	0.440814512839564	0.0760424729073217	0.297838946738032
Merged-chr15-98918247-4	chr15	98918154	98918354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029098)	promoter-TSS (NM_029098)	-156.0	NM_029098	74775.0	Mm.385020	NM_029098	ENSMUSG00000022999	Lmbr1l	1110013E13Rik|AA415653|D15Ertd735e|Limr	limb region 1 like	protein-coding	8.72025472631273	8.92646228520308	8.54616203506873	8.5766716536665	8.55820892116355	8.78993430084801	8.57259425076458	8.45574367272953	-0.127632839460128	0.444475899672937	0.730857282914895
Merged-chr15-34237531-1	chr15	34237431	34237631	+	622.0	f0_balb.idr	promoter-TSS (NM_033521)	promoter-TSS (NM_033521)	-495.0	NM_033521	114128.0	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	3.76866327910157	3.29977092087035	3.53291532331536	3.38077799724214	3.10837226647691	3.5972328068995	3.09792777465951	3.5308220711318	-0.529267469179471	0.353760758590227	0.660571815517034
Merged-chr10-63240979-4	chr10	63240877	63241077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-2820.0	NM_030114	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	6.32592850200308	6.25499550483931	5.75147358662498	5.30443283370266	6.79678550446334	6.4303843193592	6.71204696921422	5.9532484919002	0.832520190795757	0.0108431528151258	0.0837098453609367
Merged-chr1-136249915-3	chr1	136249810	136250010	+	827.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10963.0	NM_001101516	383563.0	Mm.40367	NM_001101516	ENSMUSG00000052759	Gpr25	Gm1300	G protein-coupled receptor 25	protein-coding	3.3244273089959	3.48855221164368	3.67608036707216	3.80496990150413	3.4866985528521	3.56869182440057	4.12184075463224	3.45073857634963	0.282678742839519	0.602948324098469	0.82789000124091
Merged-chr3-131245952-2	chr3	131245852	131246052	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008212, intron 3 of 7)	intron (NM_008212, intron 3 of 7)	26149.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	3.08352409990745	2.98440073869386	3.30599004597234	3.14228568477178	3.14732520715206	3.0644413466183	3.18725369929451	3.02045938535553	-0.0974832433513085	0.862893648326119	0.948379583932258
Merged-chr1-180432050-4	chr1	180431958	180432158	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081227)	TTS (NM_001081227)	51446.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	4.81845491288835	5.06414878312859	5.24985177353065	4.9927160431009	5.3693720992962	5.53827454748372	5.41942869200317	5.21537661538314	0.64827882910389	0.0301888019995296	0.167993803262022
Merged-chr17-43069055-3	chr17	43068959	43069159	+	891.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	52504.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	4.07805179306255	3.92761384998352	4.29836740933757	4.17886538296721	3.02285207898718	3.31818381966662	3.26330052703914	3.19757327933765	-3.65714508597733	4.09693904856157e-08	1.91978949662649e-06
Merged-chr7-90030362-1	chr7	90030262	90030462	+	837.0	f0_balb.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	1203.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	3.99001877963876	4.34504433964621	4.17883689946279	3.91253070023465	3.91748187606543	4.11411024137259	4.24371489226777	3.9366879737367	-0.143165196620628	0.740840552499977	0.898090634348319
Merged-chr4-127124546-2	chr4	127124448	127124648	+	676.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001285885)	TTS (NM_001285885)	-1495.0	NM_001099319	100039968.0	Mm.392655	NM_001099319	ENSMUSG00000070737	Tmem35b	Gm12942|Zmym6nb	transmembrane protein 35B	protein-coding	3.36658907390551	3.84678964125702	3.23629571564345	3.01591715157493	3.78328286782003	3.91272510067212	3.47232807158297	3.36529056615144	0.787343762404739	0.178921469962503	0.474955296131163
Merged-chr5-43845873-4	chr5	43845807	43846007	+	673.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22902.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	3.3591518602995	3.59368544672582	3.62097162828995	3.34605798561104	3.51759584099984	3.41322895088567	3.34709033632571	3.03158957515963	-0.473157742809964	0.392724792091643	0.692117979418531
Merged-chr13-97573769-4	chr13	97573663	97573863	+	937.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046157, intron 2 of 2)	ORR1G|LTR|ERVL-MaLR	13763.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	4.47279545101467	4.46162932563516	4.77069029613856	4.44714752922329	4.49573471962465	4.60399481777281	4.27564406395067	4.38415772836397	-0.206297138042619	0.579796080628747	0.815474743074892
Merged-chr17-31680590-4	chr17	31680513	31680713	+	825.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001278570, intron 2 of 2)	intron (NM_001278570, intron 2 of 2)	2682.0	NM_001278570	12954.0	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	4.33885563118856	4.62861711009779	4.88329936071505	4.41711877859817	4.04018935466987	4.1032110391983	4.40675056877444	4.4657896494307	-0.742036722138468	0.0711271762177253	0.286064034128233
Merged-chr8-107425097-4	chr8	107425020	107425220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026277)	promoter-TSS (NM_026277)	-82.0	NM_026277	67619.0	Mm.36817	NM_026277	ENSMUSG00000003848	Nob1	1700021I09Rik|ART-4|Nob1p|Psmd8bp1	NIN1/RPN12 binding protein 1 homolog	protein-coding	6.95667020660446	7.46189064176985	7.04818486710004	7.23779975859553	6.93238430046724	7.03853594742608	7.34781613787992	7.30092383389117	-0.0473280653835929	0.824565588707963	0.932696938095671
Merged-chr13-52615229-4	chr13	52615137	52615337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 3 of 13)	intron (NM_011518, intron 3 of 13)	18355.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	7.96770356976947	7.92826233982958	8.00201168457791	8.07931752213892	7.54934277958173	7.65319149218589	7.40842091346593	7.62836173813005	-0.571339515823906	0.000559743230846681	0.00845183780832327
Merged-chr2-84458743-4	chr2	84458666	84458866	+	844.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355271, intron 2 of 8)	Lx3B|LINE|L1	15408.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	4.11210011945394	4.29245467948898	4.59934974998037	3.67444788188442	4.20744593214639	3.90216484967415	4.31818792359981	4.45398127348656	0.0770342258663099	0.871441296780041	0.951627503185851
Merged-chr8-113632822-4	chr8	113632728	113632928	+	911.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2758.0	NM_001048143	270096.0	Mm.74689	NM_173015	ENSMUSG00000078908	Mon1b	5031407H10|5033413H12Rik	MON1 homolog B, secretory traffciking associated	protein-coding	4.10847179411714	4.30091993125117	4.40097693770631	4.66984678576585	4.9018156848117	4.52978059642679	4.33728674665642	4.84032106964925	0.620067352884136	0.131829795297296	0.404210211448674
Merged-chr1-93636385-3	chr1	93636285	93636485	+	818.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021537)	promoter-TSS (NM_021537)	-658.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	3.44418056586346	3.44147874194374	3.56868326732529	3.28002598658685	3.81781499716837	3.95970323528267	3.91140554647755	4.17116319910422	1.66447238542787	0.000377167351612807	0.00612651641269922
Merged-chr6-35253178-4	chr6	35253084	35253284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027875, intron 1 of 2)	intron (NR_027875, intron 1 of 2)	452.0	NR_027875	67705.0	Mm.228046	NR_015608	ENSMUSG00000073155	1810058I24Rik	AI414869|AI848234	RIKEN cDNA 1810058I24 gene	ncRNA	5.93692488358395	6.07643999911769	5.4926998096716	5.78215396289608	6.04100199319943	6.19729480504464	5.74369670703893	5.88878396148094	0.222007845508727	0.408596712343201	0.704388708563461
Merged-chr9-62977400-4	chr9	62977299	62977499	+	960.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	3480.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	5.06244990858883	5.37874462165989	4.62447893046309	4.80451592309908	5.4859894138502	5.27067965445318	5.10400936374135	4.99035309675751	0.449281931434965	0.199593992932568	0.501474545095065
Merged-chr17-55702556-2	chr17	55702468	55702668	+	626.25	f0_balb.idr|f1_balb.idr	intron (NR_151542, intron 3 of 16)	intron (NR_151542, intron 3 of 16)	10068.0	NM_028370	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	3.54199469025675	3.54403543780457	3.43241228023189	3.67479573521323	3.50272762124741	3.65796794077085	3.41975061635489	3.24628047553469	-0.311723640184331	0.541331702769296	0.793203558709177
Merged-chr13-62929417-4	chr13	62929351	62929551	+	917.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-35442.0	NM_001289926	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	3.89381852836464	3.59502398851483	4.30421250721308	3.86503725656387	4.08062708401033	3.64826681376043	4.24441906027874	4.48169098884675	0.553808008507465	0.26511807545558	0.576956662317123
Merged-chr6-83685800-5	chr6	83685635	83685835	+	827.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7878.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	4.41955341813479	4.03276168366186	4.76041904028976	4.78777762331376	3.79337204588106	3.69476877487627	3.82343817281599	4.25070014366118	-1.61664281899699	0.000795651146957218	0.0111946339176256
Merged-chr10-80104417-2	chr10	80104317	80104517	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1715.0	NM_001359637	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	2.74119695950816	2.77663916290465	2.66976099835614	2.4762137258736	2.98588597601316	2.98584321907306	2.86392262396316	3.29966635639325	1.76304987720915	0.00569962929707952	0.0523611143181238
Merged-chr3-88454889-4	chr3	88454779	88454979	+	994.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163489, intron 1 of 14)	intron (NM_001163489, intron 1 of 14)	882.0	NM_013658	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	5.02603895472899	5.4784440494712	5.06389754979305	4.94036053698312	5.51127856619098	5.34550364185185	5.4134777636226	5.68280281529782	0.645710634745192	0.0346695181869795	0.184333086350499
Merged-chr11-6561047-4	chr11	6560962	6561162	+	974.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190344, intron 1 of 9)	intron (NM_001190344, intron 1 of 9)	879.0	NM_001190344	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	5.56788455503351	5.17402672931294	6.31282639268063	5.99580665884851	5.09293176965107	5.02308169655805	5.4581760772035	5.61723599741545	-0.876449567548615	0.015299325295623	0.1063363612164
Merged-chr11-94937080-4	chr11	94936963	94937163	+	800.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007742, intron 1 of 50)	intron (NM_007742, intron 1 of 50)	839.0	NM_007742	12842.0	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	3.99517148984035	4.33372931337845	4.09053065702386	3.66099234158232	3.79013291517036	4.0164862793395	4.07230611952135	4.13278927323504	-0.0772160669208822	0.867727877876643	0.950434211754337
Merged-chr1-55766944-4	chr1	55766845	55767045	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-164296.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	5.26410830612725	5.07946141738435	5.17057919423694	5.29507124297409	5.08913626914256	5.37670324072264	5.29775685251357	5.34913772361371	0.114211772374088	0.697906710981351	0.878043796632193
Merged-chr12-112942565-1	chr12	112942465	112942665	+	678.0	f0_c57.idr	promoter-TSS (NM_025399)	promoter-TSS (NM_025399)	-423.0	NM_001316724	66174.0	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	4.07501093491517	3.62613447561712	4.21049855300501	3.84665509144625	4.05995199853135	4.20116012605276	4.05777298316993	4.40451290694803	0.620811131251548	0.160746920255128	0.449048999638783
Merged-chr1-92985910-6	chr1	92985823	92986023	+	985.172241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_022320, exon 2 of 2)	3' UTR (NM_022320, exon 2 of 2)	7020.0	NM_022320	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	4.86538948283719	4.77078315061835	5.27880002908284	4.8225152062655	4.89608304293089	4.43754874020605	4.69598800892954	4.45560816212584	-0.610235153318479	0.101063569092501	0.348923061133733
Merged-chr8-121792360-4	chr8	121792251	121792451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37218.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	6.00007174227502	6.10122272080696	6.40861668714358	6.54635920953592	7.40343062348623	7.31857323924153	7.5097679279522	7.40053393007037	1.54051353516927	6.80636590424884e-12	6.2918223207601e-10
Merged-chr17-21422777-3	chr17	21422676	21422876	+	942.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011760)	promoter-TSS (NM_011760)	-451.0	NM_011760	22712.0	Mm.12916	NM_011760	ENSMUSG00000023882	Zfp54	2810034D10Rik|KRAB10|Zfp-54|Zfp76|mszf83	zinc finger protein 54	protein-coding	4.11539948043437	3.86447198584086	3.84767093226622	4.54020508297323	4.58610747847876	4.02866852684151	4.39661273937753	4.20706247843733	0.445262302039763	0.348362320185619	0.656206673948506
Merged-chr17-21535676-6	chr17	21535601	21535801	+	953.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_144515, exon 1 of 5)	5' UTR (NM_144515, exon 1 of 5)	162.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	4.20776395949412	4.23294953610327	4.46164844642929	4.0490376527658	4.39662267562792	4.2868142105436	4.14312426069576	4.3799042046473	0.18914416342854	0.63416596286731	0.845067847438589
Merged-chr5-88631725-4	chr5	88631614	88631814	+	835.608337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 9 of 13)	intron (NM_001359208, intron 9 of 13)	43866.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	5.41470395660059	4.61915702676547	4.42529609642444	4.82860740444652	4.7298046062379	4.69663767848324	4.4980655903283	4.55974753263063	-0.515336220599411	0.199087740099751	0.500914324940267
Merged-chr15-98504665-4	chr15	98504561	98504761	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	7187.0	NM_001001807	258502.0	Mm.377539	NM_001001807	ENSMUSG00000054036	Olfr279	MOR122-1|Olfr234|Olfr234-ps1|Olfr279-ps1	olfactory receptor 279	protein-coding	5.29996327771312	5.37075567877147	4.95103619992374	5.00773410572767	5.25762739894344	4.97392166170475	4.99798419427648	4.7506838518363	-0.27507359491289	0.408930659807426	0.704752613561458
Merged-chr2-71382124-4	chr2	71382021	71382221	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-7139.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	4.77640540933025	4.27580296618198	4.21401274967804	4.50121180750938	4.78293893861696	4.72156925017865	4.75406785276438	4.9068017085934	0.71368540562343	0.0506792915939285	0.23339651366127
Merged-chr7-58742866-2	chr7	58742766	58742966	+	974.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009728, intron 2 of 20)	MTEb|LTR|ERVL-MaLR	84664.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	3.26778984852295	3.33452013981413	3.4502493022037	3.68461656343589	3.54652323953105	3.44268121215205	3.69190278970929	3.79390585968793	0.536562640948922	0.307754857512285	0.620118414801611
Merged-chr11-53775966-4	chr11	53775882	53776082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159396, exon 9 of 10)	exon (NM_001159396, exon 9 of 10)	5509.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	6.39328153472692	6.16809341667305	5.83685274300612	6.33820039939256	6.30574233036013	6.04087982721625	6.22129475291591	6.23003306649517	-0.00392342834097506	0.987228005047249	0.995258250959001
Merged-chr14-54893998-4	chr14	54893893	54894093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019402)	promoter-TSS (NM_019402)	-150.0	NM_019402	54196.0	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	9.20222755983411	9.10997513740211	9.19136830548012	9.09373672937421	8.9547846163981	9.15484668563441	9.16031474560548	9.04587173179445	-0.0854174285113273	0.541807489694555	0.793491190310592
Merged-chr12-80107365-3	chr12	80107275	80107475	+	990.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007564)	TTS (NM_007564)	5638.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	3.95736328474837	4.09907852527624	3.46582294322642	3.16603331083178	3.50583805947167	3.70077921376836	3.19330209689074	3.33904272612431	-0.876159563115645	0.146103406328719	0.426051635014622
Merged-chr5-62821739-4	chr5	62821627	62821827	+	962.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 2 of 8)	intron (NM_001170705, intron 2 of 8)	7904.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	4.72092132146402	4.83938421678465	5.2843520888759	4.39526903044749	4.6736340360414	4.6082754422703	4.3623084836997	4.27823693336304	-0.738212613759111	0.0742988954526083	0.293757767006677
Merged-chr14-73380476-4	chr14	73380382	73380582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	4807.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	5.54120045909231	5.68745785315883	5.81103369018314	5.701068551398	6.02177081603514	6.18605864029691	5.89649866785441	6.08794345083156	0.576926291399414	0.0189443951846737	0.123348253279353
Merged-chr1-16619809-2	chr1	16619709	16619909	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025773)	promoter-TSS (NM_025773)	-471.0	NM_001271017	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	4.29314844015459	3.99155335035274	4.38067308986389	4.48210422842598	4.41228352801754	4.55124836754205	4.18274334671126	4.37788929522584	0.181516881446817	0.651254367678251	0.853855396950078
Merged-chr11-101582256-4	chr11	101582164	101582364	+	979.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144830)	promoter-TSS (NM_144830)	22.0	NM_144830	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	4.87964408300007	4.56469529194092	4.4954384879061	4.50068454273902	4.8145339238203	4.98327223217312	4.28461087032576	4.90986124369104	0.34373431750987	0.362417011079078	0.667645334427189
Merged-chr10-56369353-4	chr10	56369188	56369388	+	845.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8012.0	NM_010288	14609.0	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	3.90677156792425	3.41168234289455	3.90736221956383	3.68511114199587	3.97611824766884	4.07690467087029	3.63166135782707	3.85673837991459	0.46045557420688	0.337088004240258	0.646919222783503
Merged-chr3-9619729-3	chr3	9619623	9619823	+	886.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9638.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	3.7185748260631	4.18036099814018	4.02583479501102	4.47917767374588	3.79171436101241	3.51222338271114	4.00796999465848	3.59686077289332	-1.11334048051732	0.0293084526090141	0.164678429764526
Merged-chr2-60878079-5	chr2	60877859	60878059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	3479.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	5.5391289487652	5.6369820513442	5.83318183910546	5.56082809825865	5.51021167379358	5.37487868758152	5.69018813347973	5.56338038951833	-0.17103900729984	0.52575652223995	0.783367294725902
Merged-chr13-113433691-4	chr13	113433581	113433781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69163.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	7.11008175635666	6.91619052837079	7.54658448442394	7.42406964977475	6.78071615571866	6.67687760607003	7.13185758075689	6.80725394492609	-0.573286404122096	0.0118934528085518	0.089315645234254
Merged-chr15-55097345-3	chr15	55097265	55097465	+	925.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-6874.0	NM_001355594	72107.0	Mm.486550	NM_183089	ENSMUSG00000022422	Dscc1	2010006I05Rik|2600005O03Rik|Dcc1	DNA replication and sister chromatid cohesion 1	protein-coding	3.71889739554466	3.62836842086693	3.71941207654484	3.59532200796561	3.77270034095325	3.72645724037068	3.89722193824908	3.95597262496463	0.541241681279935	0.227939779781717	0.536696679448311
Merged-chr8-69717060-4	chr8	69716974	69717174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039965)	promoter-TSS (NM_001039965)	-172.0	NM_001039965	66869.0	Mm.334581	NM_181274	ENSMUSG00000054648	Zfp869	1200003I07Rik	zinc finger protein 869	protein-coding	9.19144981251376	9.4205078051568	9.22693085652449	9.31317436928997	9.22087677658979	9.34209532795069	9.34163785812812	9.20283925594834	-0.0191213450751345	0.891486645760285	0.959385213525176
Merged-chr4-33253314-4	chr4	33253209	33253409	+	821.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4522.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	3.4393701169636	3.82718433728078	3.3747036309718	3.46277108914411	3.92038037076837	3.791490765404	3.93981758981286	3.72266395876721	0.940659759991433	0.0508646545432046	0.233927456595643
Merged-chr4-46077045-4	chr4	46076947	46077147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021883, intron 2 of 9)	intron (NM_021883, intron 2 of 9)	37825.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	6.3364614707684	6.42315511755227	6.90174354886756	6.99502592543169	5.5159763006012	5.70317855695874	6.0503247014561	5.83872518272157	-1.40588418111163	3.58141679003306e-07	1.3676055026704e-05
Merged-chr7-19227396-4	chr7	19227309	19227509	+	990.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207525)	promoter-TSS (NM_207525)	-980.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	4.45511673690482	4.1925234127384	4.08537020865584	4.1253573537113	4.86142663074993	4.58540044787861	4.06970310075964	4.73865651803289	0.917675167452708	0.0276574852878309	0.158671084492828
Merged-chr9-21017327-2	chr9	21017227	21017427	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010493, intron 1 of 6)	intron (NM_010493, intron 1 of 6)	1387.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	3.52812985569782	4.18304442756515	3.47023191644666	2.99628828752543	3.80050145443	3.52752295498382	3.33360225864241	3.6360312340308	-0.115863455794366	0.850487797329095	0.943627844188644
Merged-chr1-190910462-4	chr1	190910367	190910567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178775, intron 1 of 14)	MIRb|SINE|MIR	1303.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	5.37580173490781	5.52430918721756	5.18620227669925	5.72972170443865	5.3879828135001	5.36304470319376	5.4349142293828	5.31265617757232	-0.20329091106943	0.489934632338975	0.761966459176932
Merged-chr2-32530630-2	chr2	32530523	32530723	+	648.0	f0_balb.idr|f0_c57.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4736.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	3.56524339762606	3.43481048134596	3.39680097709476	3.95226700276097	3.60532861417572	3.16658706142773	3.44282154747164	3.71267298838589	-0.380869803851071	0.499577726992751	0.768387448003553
Merged-chr1-153487716-4	chr1	153487605	153487805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007842)	promoter-TSS (NM_007842)	-45.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	7.05023357986501	7.39957279896004	6.40593136767381	6.83043866442058	7.41270878434668	7.02004032114966	7.09704856947787	6.82335066863025	0.193359406481556	0.459918407629865	0.742271214480192
Merged-chr11-78375886-2	chr11	78375786	78375986	+	843.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008238, intron 1 of 8)	intron (NM_008238, intron 1 of 8)	10722.0	NM_008238	15218.0	Mm.4496	NM_008238	ENSMUSG00000002057	Foxn1	D11Bhm185e|Fkh19|HFH-11|Hfh11|Whn|nu|nude	forkhead box N1	protein-coding	3.17927788829174	3.01795062952826	3.1198634979494	3.04854451484921	3.11849301755561	3.1674258933611	3.42738478741716	3.23509543002407	0.584223778367716	0.286232042335076	0.597872774638858
Merged-chr17-50994311-2	chr17	50994228	50994428	+	705.5	f0_balb.idr|f0_c57.idr	intron (NM_028162, intron 3 of 21)	RLTR14-int|LTR|ERV1	165050.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	4.22000152573546	3.92441964001203	3.78527390487252	3.87253318940821	4.07916670577478	4.30489632421205	4.02745461667103	3.89322434733992	0.343458621534258	0.429209667394842	0.720143399871997
Merged-chr4-153957209-4	chr4	153957093	153957293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163019)	promoter-TSS (NM_001163019)	-44.0	NM_175287	97159.0	Mm.7066	NM_175287	ENSMUSG00000047613	A430005L14Rik	C79672	RIKEN cDNA A430005L14 gene	protein-coding	7.97466997107885	7.76620000889961	7.95518162820603	7.77459883335542	8.13037953705094	8.20077193372638	7.94458276388376	8.0949039277996	0.298448225188399	0.0691291396638791	0.281093575100557
Merged-chr1-80326186-4	chr1	80326083	80326283	+	716.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016716, intron 1 of 15)	MIR|SINE|MIR	14507.0	NM_001313728	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	3.98997642588045	3.78922147409697	3.84156827746071	4.02679340580298	4.09518977065715	4.01449238785654	4.14613420416134	3.54660295465083	0.148482239312777	0.748490290947638	0.900999421474581
Merged-chr11-113684100-4	chr11	113684009	113684209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138598)	promoter-TSS (NM_138598)	42.0	NM_138598	28081.0	Mm.351688	NM_138598	ENSMUSG00000041629	Fam104a	D11Wsu99e	family with sequence similarity 104, member A	protein-coding	7.23339685698763	7.2275201131059	7.24541859093049	6.92734246155873	7.29504512254509	7.25037914209644	7.33127770899691	7.17432313954767	0.1543976946947	0.415647667653206	0.709873199507824
Merged-chr11-70092225-4	chr11	70092105	70092305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313926)	promoter-TSS (NM_001313926)	-439.0	NM_007493	11890.0	Mm.1357	NM_007493	ENSMUSG00000040963	Asgr2	ASGPR2|Asgr|Asgr-2|HL-2	asialoglycoprotein receptor 2	protein-coding	6.44699067861148	6.46567366180547	5.93511787310065	6.44734648209214	6.57013306624128	6.21112038664167	6.34611079745272	6.71514018355435	0.191890606565942	0.43802427543949	0.726196986801756
Merged-chr6-120363907-6	chr6	120363813	120364013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145997)	promoter-TSS (NM_145997)	-186.0	NM_145997	214899.0	Mm.404761	NM_145997	ENSMUSG00000030180	Kdm5a	AA409370|C76986|Jarid1a|RBP2|Rbbp2	lysine (K)-specific demethylase 5A	protein-coding	6.0792838589843	6.12023184209172	6.40996429048968	5.64835158532348	5.97152942716451	6.33657513013898	5.9630532302433	6.25149462897079	0.0934541057029518	0.735596848044979	0.895620853939579
Merged-chr2-84678231-4	chr2	84678167	84678367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290751)	promoter-TSS (NM_001290751)	-93.0	NM_001290751	66958.0	Mm.371621	NM_025868	ENSMUSG00000050043	Tmx2	2310042M24Rik|AA589631|Txndc14	thioredoxin-related transmembrane protein 2	protein-coding	9.16815275704984	9.24563945502095	9.48556954052606	9.42220810405589	9.28405980616207	9.48714980599189	9.23691177785527	9.1445891838081	-0.0550460204685158	0.723370433862963	0.889562794560077
Merged-chr12-72768418-4	chr12	72768310	72768510	+	839.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008910, intron 1 of 5)	intron (NM_008910, intron 1 of 5)	7199.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	3.92593463968815	3.63396589693475	3.59338131220911	4.14270700039733	3.96835508304112	3.83382127164974	4.38712295793282	3.7683328708804	0.423095954512092	0.398183112108826	0.696409761244211
Merged-chr12-8993436-4	chr12	8993336	8993536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159527, intron 10 of 26)	B4A|SINE|B4	19435.0	NM_172470	74682.0	Mm.87389	NM_172470	ENSMUSG00000066643	Wdr35	4930459M12Rik|4931430C06|mKIAA1336	WD repeat domain 35	protein-coding	5.98384048590318	5.60105176111987	5.6618446376967	5.55242514501213	6.00642166983761	5.48044123334881	5.82659694127416	5.87462266736987	0.201321201231435	0.465419348169482	0.745859235035924
Merged-chr4-9634322-4	chr4	9634228	9634428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177856, intron 4 of 4)	intron (NM_001177856, intron 4 of 4)	9389.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	6.89699636595854	6.53630979221619	6.87233289038138	6.97483446030492	6.51755142339739	6.77249965544285	6.52900554154724	6.82764068005237	-0.246625565564685	0.25932188417976	0.57116292954269
Merged-chr1-136525161-2	chr1	136525061	136525261	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001287179, intron 26 of 28)	intron (NM_001287179, intron 26 of 28)	57313.0	NM_001287179	381293.0	Mm.458468	NM_001081258	ENSMUSG00000041498	Kif14	D1Ertd367e|E130203M01	kinesin family member 14	protein-coding	2.96117455082743	2.97734216327384	2.96151106725788	2.91326624773212	3.06073268981829	3.06964308760713	3.18106665570457	3.19227443880007	0.726057240266908	0.194487169142699	0.494891206434022
Merged-chr17-45748625-3	chr17	45748522	45748722	+	798.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 1 of 4)	intron (NR_152153, intron 1 of 4)	14116.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	3.22343000255874	3.26866766029092	3.02566927234117	3.04051057549173	3.6841691566378	3.45589925807739	3.27151017032373	3.44689034903659	1.23054734997272	0.0218752106645359	0.135986626097636
Merged-chr11-106193090-3	chr11	106192998	106193198	+	951.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252449, intron 1 of 10)	intron (NM_001252449, intron 1 of 10)	505.0	NM_001252448	72149.0	Mm.403722	NM_028126	ENSMUSG00000069631	Strada	2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik	STE20-related kinase adaptor alpha	protein-coding	3.7192336242306	3.99809039663961	3.99184376771949	3.76252271027694	3.92712897439745	4.25740918124162	4.3502801568066	4.03763747271804	0.749247792309622	0.0847209699896556	0.316759958323353
Merged-chr11-3451313-2	chr11	3451213	3451413	+	840.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_145355, intron 1 of 7)	L3|LINE|CR1	-1124.0	NR_028317	71523.0	Mm.72795	NM_027820	ENSMUSG00000034587	8430429K09Rik	-	RIKEN cDNA 8430429K09 gene	ncRNA	2.47738781228344	2.40541386309994	2.54563813335444	2.23880498499124	2.53799503725989	2.78068779415254	2.60045004443147	2.60892363652753	1.20943527365966	0.0806862479453305	0.308129561678833
Merged-chr11-95858781-4	chr11	95858685	95858885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045187)	promoter-TSS (NR_045187)	-32.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	8.46809168641553	8.36702742608446	8.21696196664014	8.10642743258816	8.49488874603744	8.63735651964561	8.72467663709098	8.33865583142273	0.334409196969364	0.0510948494510629	0.234622923163424
Merged-chr11-48776798-3	chr11	48776670	48776870	+	864.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-23590.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	3.56807973793901	3.74523215698735	3.22089407383099	3.62161197354865	3.32805094401344	3.39789756425297	3.44933787655611	3.40454204285196	-0.561647239346084	0.284371553532314	0.596289999025483
Merged-chr9-63604446-3	chr9	63604345	63604545	+	853.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	1799.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	3.38015839819983	3.45241266993919	3.59399623061925	3.45852460897561	3.16477688536159	3.49475921551531	3.42400103156732	3.48976865086547	-0.276486694886732	0.59298549390143	0.822436004899168
Merged-chr11-54236827-2	chr11	54236727	54236927	+	895.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13072.0	NM_009969	12981.0	Mm.4922	NM_009969	ENSMUSG00000018916	Csf2	CSF|Csfgm|GMCSF|Gm-CSf|MGI-IGM	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding	3.64999947419536	3.46245959091532	3.31521259262475	3.33004949860197	3.64104580706014	3.66487398079039	3.36538542667763	3.64835182398159	0.487148736051767	0.331311657671843	0.642467227210669
Merged-chr5-110416626-6	chr5	110416476	110416676	+	986.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142642, intron 3 of 18)	(TG)n|Simple_repeat|Simple_repeat	-29449.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	4.02841731023681	3.45427587515726	3.79601689619294	3.61823330410652	4.02895547297746	3.56339462807923	3.82974579327975	3.98323785994896	0.394074240419184	0.420907574504502	0.713593114282418
Merged-chr6-116123457-4	chr6	116123364	116123564	+	899.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	MERVL_2A-int|LTR|ERVL	69910.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	4.27897810548977	4.20871403272251	3.70376819595598	4.23422712448248	4.19321209522904	4.56815187643509	4.03141159621625	4.14336753234552	0.285820995285347	0.520320929740128	0.780730751415725
Merged-chr9-20544631-4	chr9	20544516	20544716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23197.0	NM_001082485	77519.0	Mm.431849	NM_001082485	ENSMUSG00000060510	Zfp266	5330440G10Rik|5730601F06Rik|AW552317	zinc finger protein 266	protein-coding	6.80611503618268	6.57785246008778	6.74973100265877	6.91151612933955	6.88899471399638	6.9409853703923	7.05940767522885	6.77403556705337	0.201407394823702	0.322381244848511	0.633942634212845
Merged-chr17-65768667-4	chr17	65768548	65768748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	4104.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	7.83756244853077	6.94483931321495	7.64979049052865	7.57811740164182	7.45802967565314	7.45970483192629	7.2991944742772	7.52467027753783	-0.136974670256061	0.541702015552576	0.793401254763463
Merged-chr4-118428083-4	chr4	118427991	118428191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019422)	promoter-TSS (NM_019422)	-2.0	NM_001039175	54325.0	Mm.282096	NM_019422	ENSMUSG00000006390	Elovl1	AA407424|BB151133|Ssc1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	protein-coding	8.34937362307912	8.39676031047082	8.51494723950515	8.3367832647539	8.5093116452712	8.4893242577323	8.61601661026141	8.38305915657788	0.1316083209512	0.382946047938379	0.684806264846199
Merged-chr9-44966990-4	chr9	44966909	44967109	+	932.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1409.0	NM_145400	140630.0	Mm.215069	NM_145400	ENSMUSG00000059890	Ube4a	4732444G18Rik|9930123J21Rik|UFD2b	ubiquitination factor E4A	protein-coding	4.41928145750361	4.37705657933282	4.02817710482189	4.09109753326824	4.48802901090641	4.41535808366666	4.55702993596554	4.8128053330197	0.800533248434669	0.038620312376005	0.19725568417133
Merged-chr17-37618261-4	chr17	37618163	37618363	+	862.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	6370.0	NM_146632	258625.0	Mm.377599	NM_146632	ENSMUSG00000061336	Olfr116	MOR218-2	olfactory receptor 116	protein-coding	4.23572513532249	3.78113887180363	3.88485671659151	4.23153904741094	3.84990636215184	3.51763755728244	3.91786844942568	3.93220570396194	-0.664991754564936	0.161998781292093	0.451094443992264
Merged-chr13-24515496-3	chr13	24515368	24515568	+	862.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66721.0	NM_001286100	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	3.16212130323982	2.94919559598008	3.04714036987742	3.236950542567	3.0510116006694	3.09300958580811	2.91162135459042	3.10453569896234	-0.278887320210559	0.630549632465134	0.84289992467624
Merged-chr10-23787277-4	chr10	23787175	23787375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011295)	promoter-TSS (NM_011295)	-66.0	NM_011295	20042.0	Mm.371846	NM_011295	ENSMUSG00000061983	Rps12	-	ribosomal protein S12	protein-coding	8.32293736068212	8.58929343902972	8.37833805237094	8.20886593347997	8.4516237858817	8.34937514364431	8.43572601180421	8.08909213144424	-0.0472015592009797	0.78476769306741	0.916241189783762
Merged-chr5-33274028-2	chr5	33273978	33274178	+	941.400024	f0_balb.idr|f0_c57.idr	intron (NM_001198860, intron 1 of 9)	intron (NM_001198860, intron 1 of 9)	926.0	NM_001310535	13016.0	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	4.8810993170251	4.28098426442887	4.81564904651221	4.90866610160938	4.3649253537576	4.55036207690614	4.68672896010446	4.50614188195862	-0.48761645443262	0.201768507863391	0.504206910865372
Merged-chr11-104469086-3	chr11	104468989	104469189	+	938.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359634)	promoter-TSS (NM_001359634)	-228.0	NM_001359634	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	4.43859371767954	4.10833561081216	3.80437130266048	4.13138320761229	4.09646150581234	4.19202545959169	4.05115305814317	4.15900567339064	-0.038192297419525	0.928562854306362	0.974064541613944
Merged-chr11-55460160-3	chr11	55459945	55460145	+	575.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	1163.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	3.62587219157691	3.05562589981108	3.1438827684104	3.14552261245987	3.78688162852313	3.84576894852939	3.39356583120547	3.76727056692156	1.50750932070466	0.00598535654477862	0.0541405125811155
Merged-chr2-30469902-3	chr2	30469814	30470014	+	829.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4285.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	3.36107573988219	3.37918923030941	3.30433390867161	3.18669800322746	3.23333869601782	3.63608250167318	3.29194782226705	3.2429023392333	0.190268835604351	0.721061728402447	0.888617497696901
Merged-chr3-152895144-4	chr3	152895031	152895231	+	938.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	87076.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	4.8166715236562	4.60612912482236	4.78009633562317	4.6985433036096	4.79609387715099	4.95352649823465	4.86548930598562	5.04853177894712	0.391447937309409	0.230135127846917	0.539320721200268
Merged-chr1-58711144-2	chr1	58711044	58711244	+	727.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289704)	promoter-TSS (NM_001289704)	-347.0	NR_149257	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	2.90833230066798	2.69596999523702	2.78979005102973	2.48380805141737	2.7430798501897	2.89836418003185	2.65065811782467	2.7883620174374	0.251854801528764	0.701204411251084	0.879597990737905
Merged-chr9-43096488-1	chr9	43096388	43096588	+	582.0	f0_balb.idr	intron (NM_001359232, intron 1 of 40)	intron (NM_001359232, intron 1 of 40)	9230.0	NM_001359232	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	3.20792648632512	3.10477767136912	3.43003246861574	3.26171438547115	3.48133240963615	3.12176338670038	3.25534054898625	3.37620964139156	0.244921049256496	0.652848801054733	0.854764223296605
Merged-chr12-13215092-4	chr12	13214965	13215165	+	847.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34109.0	NM_134040	104721.0	Mm.251255	NM_134040	ENSMUSG00000037149	Ddx1	AA409185|DBP-RB	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	protein-coding	3.7618675507696	4.05309027948065	3.76235675663337	4.035244075606	4.01017252802528	3.82303127926604	4.21538633173555	4.15107057030271	0.36623418028476	0.407957936725773	0.704088986426551
Merged-chr7-105762956-4	chr7	105762859	105763059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162943, exon 10 of 21)	exon (NM_001162943, exon 10 of 21)	-10724.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	6.18862483210678	6.56943862478417	5.79082346674881	6.30297904921302	6.89298919194598	6.84305686560984	6.97649787344427	6.66228546792819	0.864453869700139	0.000385094704818128	0.00623820118212324
Merged-chr6-113680198-4	chr6	113680122	113680322	+	975.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 8 of 11)	intron (NM_001113553, intron 8 of 11)	-16828.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	5.64282467931004	5.83873966161538	6.70557005738873	7.13509221948079	5.50727167831212	5.19062112053731	5.87117959161754	5.45646012007445	-1.48408344972582	0.00861860340787201	0.0708778973349093
Merged-chr11-63806755-4	chr11	63806634	63806834	+	931.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	115550.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	4.4313708329491	5.22106418808172	4.85675472698511	3.65916735931184	5.52198398192132	5.94993281684959	5.60074910937422	5.20732593091177	1.65724313675839	0.0128937793431601	0.0944981795579482
Merged-chr1-50962775-1	chr1	50962675	50962875	+	606.0	f0_balb.idr	intron (NM_019790, intron 4 of 9)	intron (NM_019790, intron 4 of 9)	35252.0	NM_019790	56363.0	Mm.245154	NM_019790	ENSMUSG00000026109	Tmeff2	4832418D20Rik|7630402F16Rik|TR-2	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding	3.0647450234762	2.74355426858937	3.06521339570439	2.94990486500343	2.46817237586361	2.74378376738015	2.69958769242208	2.70678039060492	-1.54539544351917	0.025235218897843	0.149398456785292
Merged-chr7-67226313-4	chr7	67226171	67226371	+	790.016663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175215, exon 3 of 3)	exon (NM_175215, exon 3 of 3)	3655.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	3.1016318393778	3.16373283454889	3.22545358351037	2.85937381820867	3.44670984848208	3.33886409959281	3.270104756739	3.38914159329491	1.08321493084061	0.0490072091728483	0.228888722220379
Merged-chr14-36952376-4	chr14	36952312	36952512	+	832.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027045, intron 1 of 10)	intron (NM_027045, intron 1 of 10)	-11148.0	NM_001347502	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	4.01333699950003	3.98070872989281	4.15206744339341	3.8609130790811	4.02341155299407	4.08697520588766	4.08954432869718	4.10512822579882	0.216415975847641	0.601203791856091	0.827071740947179
Merged-chr3-95015609-4	chr3	95015513	95015713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030074)	promoter-TSS (NM_030074)	-156.0	NM_001357863	78266.0	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding	8.82308571227077	9.04767965275137	8.92922697739018	8.97284856722116	8.97581467313695	9.00636993834651	9.25944532410047	8.71780181382537	0.0709703543253897	0.668386749295898	0.862948051435654
Merged-chr7-128381217-4	chr7	128381121	128381321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 4 of 4)	intron (NM_026418, intron 4 of 4)	36951.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	6.10185517832996	6.04607081688682	5.79701625860886	6.44123758507664	5.55127704079949	5.78948334615454	5.83916515329733	5.5782148430028	-0.718121015238948	0.00889831881358044	0.072572882917722
Merged-chr16-4630138-4	chr16	4630014	4630214	+	864.404175	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 23 of 27)	intron (NM_030205, intron 23 of 27)	-5168.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	4.23131246973641	4.2042397218067	4.14109573122353	3.72955530094021	4.44947306012973	4.16826409446294	4.33671769181037	4.04097880609201	0.477809307304257	0.27021432665375	0.582024618921724
Merged-chr1-191314104-3	chr1	191314002	191314202	+	837.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025424, intron 1 of 3)	intron (NM_025424, intron 1 of 3)	4016.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	4.11068349861177	3.55384167214576	3.79467080050227	3.7576647079346	3.56139290609694	3.9668786529425	3.55825316878172	3.98270673431914	-0.105808883304171	0.830421277518784	0.934980877782147
Merged-chr6-114875273-4	chr6	114875171	114875371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	46550.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	7.95038017406412	7.99506817512436	7.95847393831826	7.79317747580103	7.63950196266148	7.81421676558492	7.6336985393227	7.5315403257348	-0.345099912000216	0.0407327813050169	0.204029250729037
Merged-chr7-127387222-4	chr7	127387120	127387320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030226)	promoter-TSS (NM_030226)	-54.0	NM_030226	78921.0	Mm.200950	NM_030226	ENSMUSG00000030823	9130019O22Rik	-	RIKEN cDNA 9130019O22 gene	protein-coding	5.3752658946273	5.61021973836018	5.00984605798157	5.28873282749539	5.19915152429071	5.60579355739827	5.45933979935252	5.25110070743851	0.07374932499236	0.8103758906476	0.92679579587174
Merged-chr2-173000977-4	chr2	173000872	173001072	+	857.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175112, intron 1 of 11)	intron (NM_175112, intron 1 of 11)	855.0	NM_175112	66679.0	Mm.4113	NM_175112	ENSMUSG00000027509	Rae1	3230401I12Rik|D2Ertd342e|MNRP|MNRP41	ribonucleic acid export 1	protein-coding	4.39564417216642	4.4042499066585	4.18236801819624	4.43976592585175	4.05624127852569	3.86510223618107	4.25322492561533	4.22554151645472	-0.642425884569679	0.115321245112319	0.375690004386917
Merged-chr6-34876199-4	chr6	34876142	34876342	+	913.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199145, intron 2 of 3)	intron (NM_199145, intron 2 of 3)	1823.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	4.24704263701158	4.21947111545199	3.90018633192992	4.36158297672427	4.24742233501817	4.37432888866051	3.82801257836464	4.32910131184085	0.02053505980535	0.962192424044714	0.986416651799321
Merged-chr18-38443717-3	chr18	38443609	38443809	+	884.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 2 of 7)	intron (NM_001355749, intron 2 of 7)	24802.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	3.59863784136912	3.8703442470583	3.53828978674547	3.05537985347356	4.2918499058541	3.77923253991434	4.10992228423896	3.71099626104784	1.32352339185476	0.0151052139403475	0.105378224351661
Merged-chr3-90231610-4	chr3	90231504	90231704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_206924)	promoter-TSS (NM_206924)	7.0	NM_206924	23922.0	Mm.13912	NM_206924	ENSMUSG00000027937	Jtb	Gm622	jumping translocation breakpoint	protein-coding	7.14701736023792	7.04787835389035	6.70102877001958	6.78337858198187	6.85426460882461	7.25636320749989	6.88310472644234	7.17597160317993	0.167491701472591	0.440217963042583	0.727722476459846
Merged-chr18-74876713-4	chr18	74876613	74876813	+	816.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84550.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	3.94307710903522	3.9702369954018	4.18105981644116	4.3070350081942	4.24880387726426	4.01143210958401	3.9278220955302	4.08884826847099	-0.103235782492424	0.810088915876508	0.926776956547369
Merged-chr4-134558045-3	chr4	134557913	134558113	+	976.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5847.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	4.48721046216465	4.00793138086138	3.66730485581738	3.80965619780016	4.42074564729849	3.96800287772761	3.71536895895952	4.09461248321353	0.144766655028257	0.77430926483728	0.911799562721906
Merged-chr6-39447995-4	chr6	39447877	39448077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	27599.0	NR_152168	621427.0	Mm.389742	NR_152168	ENSMUSG00000068601	Gm10244	Anmkrn1	predicted gene 10244	ncRNA	6.08274843389747	5.75701601452812	5.59116824170511	5.62794435370914	5.94659807189031	6.29503488342926	5.56308029602912	5.89143541786034	0.284038204737325	0.318135436073021	0.63003757714634
Merged-chr18-4256594-4	chr18	4256481	4256681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90749.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	6.13293281747824	6.07578069002578	6.03349273632968	6.30841942866634	5.8211700228783	5.82296585231297	5.75001530886722	5.84963920095034	-0.544321151410404	0.0243207528683738	0.145743526681678
Merged-chr4-138038620-4	chr4	138038509	138038709	+	857.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	40784.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	4.47903979917914	4.01914280744302	4.55104135590378	4.84908259328941	3.87783707235904	3.75256667980457	4.07986564360536	3.76056657330392	-1.66427464161659	0.000410964599925536	0.00657792877402738
Merged-chr16-19981218-2	chr16	19981118	19981318	+	782.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_183390, intron 1 of 6)	intron (NM_183390, intron 1 of 6)	1831.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	2.9476119161935	3.1420826562607	3.08082271562773	3.24908696891706	3.4893012929813	3.18979330130141	3.18971692428009	3.25615336223924	0.650404847846987	0.251540522433913	0.562872232585856
Merged-chr17-27932525-3	chr17	27932425	27932625	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	URR1A|DNA|hAT-Charlie	23219.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	5.22412651743475	5.04507706943263	5.6171471067989	5.55223367942896	4.04470325111027	4.15695460817849	4.2460759868464	4.01939434818416	-2.86741076099757	2.83569475015356e-12	2.81535993043262e-10
Merged-chr18-80478232-4	chr18	80478135	80478335	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26D_MM|LTR|ERVK	-8568.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	5.44786331250045	4.87399605526668	5.13321233576653	5.08874069158075	5.03982357422557	4.85079582330441	5.56127469812996	5.31209920088381	0.135567005293997	0.691098062036257	0.874332035080139
Merged-chr2-160093351-4	chr2	160093230	160093430	+	949.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76677.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	4.46304111099615	4.55684728921659	4.66417811495167	4.2542822891974	4.72889824410406	4.79760136615334	4.35474494910834	4.54478536048094	0.315957708635221	0.399229397700537	0.697288631090116
Merged-chr10-84409069-4	chr10	84408969	84409169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	31402.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	5.64667112622678	5.61523588822345	5.3404805336034	5.60616364941626	5.5541628514572	5.4199383997439	5.48954625840481	5.61865252069637	-0.0652941422470793	0.808606305239119	0.926123355924103
Merged-chr3-105815481-4	chr3	105815397	105815597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045845)	promoter-TSS (NR_045845)	-70.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	6.34075873328793	6.26679743589015	6.20458962978102	6.75497326724231	6.43207398441925	6.62451092284885	6.64765706873115	6.28036088646605	0.102851717944657	0.677411753885576	0.86767362886796
Merged-chr15-4816978-4	chr15	4816876	4817076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81761.0	NM_001166066	223825.0	Mm.159281	NM_001166066	ENSMUSG00000022155	Mroh2b	4930455B06Rik|Heatr7b2|SPIF	maestro heat-like repeat family member 2B	protein-coding	5.88471588439408	5.27877031886554	6.12341649598832	6.05648909620598	5.69303334904909	5.65492449350328	5.61749057468826	5.37963539848689	-0.470745002997226	0.121665367405379	0.386356101585507
Merged-chr8-84660182-4	chr8	84660106	84660306	+	973.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2646.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	5.9760856986985	6.39088884264026	6.16977224340996	5.51065170913934	5.78545564437016	5.74040543231281	5.13446844480666	5.49885291351516	-0.7729695006858	0.0181126893179821	0.119740235252591
Merged-chr19-45363641-4	chr19	45363531	45363731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009771)	promoter-TSS (NM_009771)	-103.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	8.52348955944766	8.82908156604653	8.7615924150228	8.49989538675629	8.75601399179929	8.6521712972753	8.57552221960275	8.6587748712254	0.00729463692059719	0.963362091719305	0.986933466608449
Merged-chr6-83005700-3	chr6	83005568	83005768	+	845.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033079, exon 6 of 10)	exon (NM_033079, exon 6 of 10)	27803.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	3.79529381928177	3.91767568368295	3.74605569006662	3.89281374608349	3.48879758821823	3.37369613269412	3.87267058756364	3.63829440971241	-0.732193607176875	0.134206981535918	0.407834980094143
Merged-chr11-82010789-2	chr11	82010681	82010881	+	618.25	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-24796.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	3.78915969385644	3.7651225429861	3.7395775614032	3.43589438787586	3.60567612207563	3.8063838412798	3.82119082214329	3.68531988646963	0.15866394219327	0.738834075886554	0.897017938620926
Merged-chr5-136085558-4	chr5	136085461	136085661	+	897.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	1645.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	4.31988178933575	3.98259562802286	4.28038968245837	3.99661332683044	4.15647527715419	3.84813145333768	3.9914095473996	4.27762310784749	-0.155937496703477	0.717308967278709	0.886969736012834
Merged-chr1-161400349-3	chr1	161400243	161400443	+	668.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009452, intron 1 of 2)	intron (NM_009452, intron 1 of 2)	4905.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	3.33869535386682	3.26692383471999	3.09386197017799	3.16813248240516	3.24505538506802	3.27134098695098	3.61982155812743	3.39195534825919	0.616667414092202	0.248333471408733	0.55943438668544
Merged-chr5-41563604-4	chr5	41563514	41563714	+	881.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144077.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	3.92546524780366	4.02922691127953	4.04195501684756	3.94969727614904	4.65679416826729	4.78905482419389	4.52319920726001	4.78262540934192	1.66398736839938	1.06164819957059e-05	0.000290754356280243
Merged-chr9-21237650-4	chr9	21237526	21237726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016679, exon 1 of 5)	exon (NM_016679, exon 1 of 5)	1706.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	6.18192921695225	6.16319039160581	6.36012440752503	5.88261469813458	6.13166624167029	5.64158330165141	5.87749329942538	6.17859268209662	-0.251576846200849	0.343770399237748	0.652384432892204
Merged-chr4-98204316-2	chr4	98204216	98204416	+	924.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	178949.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	3.13632909367289	3.08689671064897	3.00939836766553	3.32798275842094	3.10160754054439	3.24707813213916	3.44152155641968	3.13516764268923	0.295559771737387	0.604108331616927	0.828365539899979
Merged-chr10-17528482-3	chr10	17528389	17528589	+	676.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-194739.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	3.49944980865004	3.27377281213568	3.69590144488796	3.64703322994014	3.34427147031586	3.44321756829283	3.31846698064711	3.3285630846048	-0.637480441522646	0.222811900811736	0.530983202865467
Merged-chr7-29237720-4	chr7	29237616	29237816	+	904.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110201)	promoter-TSS (NM_001110201)	122.0	NM_001357668	77254.0	Mm.36699	NM_029887	ENSMUSG00000030588	Yif1b	9430029K10Rik|Yip1b	Yip1 interacting factor homolog B (S. cerevisiae)	protein-coding	4.85487185551442	4.38332998163615	4.48858402904525	4.02804746876133	5.24151184433615	5.0642946562864	4.96538503949492	5.01843279440671	1.31755186626755	0.000459302847245908	0.0072058006092388
Merged-chr6-136803280-2	chr6	136803164	136803364	+	825.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175652)	TTS (NM_175652)	1167.0	NM_175652	320332.0	Mm.246720	NM_175652	ENSMUSG00000096010	Hist4h4	B130044J01Rik	histone cluster 4, H4	protein-coding	2.95083323195079	2.74224532200008	3.07482736895441	2.96426216743215	2.95324398401541	3.18623619851667	3.06314237971924	3.28930985048538	0.761877728249873	0.197259659904871	0.498606013223324
Merged-chr4-130799238-9	chr4	130799213	130799413	+	883.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	6776.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	4.63063504737449	4.35477644672049	5.14366038336822	5.02951657834774	4.38213705127605	4.58468543397949	5.00101886330719	5.02258973266823	-0.121748946093567	0.766123567104544	0.908503528989431
Merged-chr11-61529526-4	chr11	61529390	61529590	+	918.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252188, intron 7 of 10)	intron (NM_001252188, intron 7 of 10)	24346.0	NM_001330781	27078.0	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding	3.97517323608023	4.09110045453141	4.22256051827601	4.51987266345591	4.53077905060108	3.85951845754086	4.20398277840887	4.34790337911604	0.0825559478070671	0.855063443797511	0.945424485789793
Merged-chr19-57354874-4	chr19	57354790	57354990	+	736.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040316, intron 1 of 2)	intron (NR_040316, intron 1 of 2)	6009.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	4.37511706661606	4.7333114092954	4.4173536432014	4.36394390414199	4.15994241129783	4.41671502194378	3.85198398421552	4.28576977378772	-0.695904927156945	0.0938896937430118	0.335232650049258
Merged-chr3-116007424-4	chr3	116007339	116007539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023214)	promoter-TSS (NM_023214)	-10.0	NM_021388	58193.0	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding	7.16619247957475	7.43643386139609	6.90326648452633	6.78025781619268	7.24282437951578	7.69729777083501	7.34874012998283	6.76578273303103	0.286708662638898	0.262390526305221	0.574213981359762
Merged-chr3-40705244-4	chr3	40705132	40705332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175515)	TTS (NM_175515)	-3639.0	NM_178386	73333.0	Mm.78691	NM_178386	ENSMUSG00000069041	Slc25a31	1700034J06Rik|Ant4|Sfec	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	protein-coding	6.87354684396659	6.26657327652618	7.65305565094918	7.8105618387454	6.66830921018063	6.44850464295925	7.00703287644346	7.06176697600466	-0.646590703148771	0.197517514880674	0.498938859808769
Merged-chr7-130648281-4	chr7	130648184	130648384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004468, intron 3 of 21)	intron (NM_001004468, intron 3 of 21)	-44272.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	7.03957499333494	7.30882731134777	6.7157134867586	7.04296554058539	7.2069763245154	7.2666219176634	7.4496125089203	7.08468181464042	0.286259932868724	0.170770210095239	0.463994075060846
Merged-chr3-87907463-4	chr3	87907430	87907630	+	806.8690190000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331051, intron 1 of 6)	intron (NM_001331051, intron 1 of 6)	680.0	NM_001331052	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	3.35453519029859	3.84076605664647	3.84655681546813	3.58778524682872	3.65707812418128	3.65638035498847	3.63597323932404	3.64857019677524	-0.0626795021605118	0.898028602075569	0.961952442732576
Merged-chr17-7925413-4	chr17	7925298	7925498	+	982.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145968)	promoter-TSS (NM_145968)	-602.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	5.41752414185357	5.93190037192655	5.04652693197369	4.59384338760253	5.43102715239819	5.07528152702181	5.02189954421526	5.07850107399069	-0.316967355910893	0.433866569318625	0.723256357491443
Merged-chr11-121658481-4	chr11	121658362	121658562	+	821.795837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178664, intron 3 of 12)	intron (NM_178664, intron 3 of 12)	14689.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	4.41649671575065	4.00746241797305	4.14130483629261	3.69736529716428	4.08386735926679	3.9676059886255	4.12253859382687	3.7276269720713	-0.245407230977164	0.603272426334158	0.828026186791373
Merged-chr15-103361535-4	chr15	103361423	103361623	+	993.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001314041, intron 1 of 30)	intron (NM_001314041, intron 1 of 30)	5268.0	NM_010577	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	6.25274739762452	5.92377425390755	5.47450617687349	5.64912894358733	5.80798214621167	5.90082231949879	5.76932898636991	5.43961233829858	-0.178175631067186	0.548025046634131	0.797185375508272
Merged-chr8-106039781-4	chr8	106039685	106039885	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301176, intron 6 of 14)	intron (NM_001301176, intron 6 of 14)	-19818.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	4.81886032575892	5.05338250434198	4.704096279573	4.92894900053093	4.66326103302693	4.41061792485662	4.99855595656686	5.01985612763564	-0.188114718501239	0.598447041267444	0.825981840347031
Merged-chr10-25296762-4	chr10	25296654	25296854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 1 of 7)	CpG	2409.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	5.61443272618114	5.20488573956383	5.89883336427757	5.71485347567406	5.45198769910416	5.01261296751615	5.28583261183417	5.07007250848554	-0.710865904021498	0.0258844059335295	0.152044344778372
Merged-chr6-72851758-3	chr6	72851660	72851860	+	925.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019715, intron 3 of 6)	intron (NM_019715, intron 3 of 6)	47532.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	3.85836061297332	4.02007254922292	3.71318267352628	3.61684821679727	3.23430703382111	3.54318334635748	3.64579292684871	3.71101005884952	-0.844197539809668	0.101043197424597	0.348896562990462
Merged-chr10-58408189-4	chr10	58408097	58408297	+	938.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359116, intron 3 of 9)	MTD|LTR|ERVL-MaLR	13824.0	NM_001346676	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	4.09050264990781	4.73122417588786	4.92929310760659	4.78476169000862	4.57142969617333	4.75017347773347	4.51505963918818	4.40075065297837	-0.24195079663829	0.545391257239649	0.795910121223087
Merged-chr12-85474460-3	chr12	85474346	85474546	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010234, intron 1 of 3)	CpG	556.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	8.21462474329483	8.75315870521555	7.75419866722061	7.56114488357053	8.42457306875068	8.60655660696574	8.44777140288017	8.2456706249295	0.356621557290697	0.164381869834864	0.454548662172245
Merged-chr18-13787656-3	chr18	13787563	13787763	+	896.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360804, intron 5 of 7)	intron (NM_001360804, intron 5 of 7)	185070.0	NM_001360804	225207.0	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	3.68933588079696	3.4965239831223	3.38227236063147	3.60642158649605	3.23830835293862	3.55383754353957	3.25003685301775	3.25939353128036	-0.784336768491659	0.1370327445589	0.411631144560059
Merged-chr12-98283678-4	chr12	98283583	98283783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15048.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	5.73864512230722	5.55461333736491	5.59067140768866	5.55166008324129	5.72337146793577	5.73833514611695	5.33374507028962	5.41800860979101	-0.0570573087011859	0.835726645007976	0.937516254002898
Merged-chr11-110479249-4	chr11	110479154	110479354	+	722.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356346)	promoter-TSS (NM_001356346)	-86.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	3.59013342256419	3.85274208322525	3.59056057576625	3.92721109583468	4.15859239280355	3.94103998088542	3.99825650177556	4.14237073119421	0.827322345315721	0.0704806825526622	0.284524983179216
Merged-chr18-61556217-6	chr18	61556292	61556492	+	896.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357498, intron 1 of 10)	intron (NM_001357498, intron 1 of 10)	1119.0	NM_146087	93687.0	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	3.06510888006574	2.67043056532822	2.81359244916858	2.66360741383817	2.95648650547825	3.23545099769242	2.99526573585143	3.11977186579446	1.18657643794788	0.0536061524448413	0.241668399607207
Merged-chr4-155559683-4	chr4	155559563	155559763	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001160017)	TTS (NM_001160017)	-2718.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	5.34687849369528	4.85262425135494	4.97319324279712	5.29567310895487	5.06979143380615	4.99647364371386	5.37317731091407	5.04041742187859	-0.0262227545313482	0.935878041209741	0.976714559407477
Merged-chr19-38020377-4	chr19	38020285	38020485	+	909.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 3 of 53)	intron (NM_001302140, intron 3 of 53)	23192.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	5.03404219240051	4.77386871014448	4.243122430102	4.78668779265047	4.51967975748451	4.20503696895938	4.32450796377818	4.71491878344013	-0.619045121379492	0.127455301449755	0.397291040152926
Merged-chr7-80027124-4	chr7	80027097	80027297	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	CpG	969.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	4.7161380951445	4.54221287826116	5.15280616497435	4.36648617745899	4.65055593734898	4.35468064120736	4.49518020564274	4.82068096023386	-0.259586471671712	0.518339891442082	0.779459059723581
Merged-chr1-97337108-4	chr1	97337028	97337228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-208825.0	NM_028942	74441.0	Mm.60362	NM_028942	ENSMUSG00000026331	Slco6c1	4933404A18Rik|C79179	solute carrier organic anion transporter family, member 6c1	protein-coding	6.3489106036529	5.87638439658793	6.44675149908192	6.43350633641087	5.66457121833132	6.06669773179309	5.70639471519939	6.00044127830388	-0.682544704619895	0.0104998229881386	0.0817867039256637
Merged-chr11-120612815-4	chr11	120612741	120612941	+	812.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347615, intron 6 of 12)	intron (NM_001347615, intron 6 of 12)	4364.0	NM_001347616	208990.0	Mm.29444	NM_153288	ENSMUSG00000044034	Npb	PPL7|mPPL7	neuropeptide B	protein-coding	3.5077923313235	3.96470787967083	3.62953672645019	3.66666209495358	3.7927093716826	4.19275421968505	3.67186000589971	3.840933637921	0.521756863211288	0.277167637310617	0.589300206200641
Merged-chr13-102694255-5	chr13	102694151	102694351	+	921.8800050000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360519, intron 1 of 2)	intron (NM_001360519, intron 1 of 2)	693.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	3.1865105339673	3.09172688516219	3.49202963308761	3.11784090708138	3.53923862840469	3.66445237399716	3.53034342367659	3.82349755406658	1.43495939703417	0.0058818912807027	0.0534969511205134
Merged-chr17-31082559-3	chr17	31082534	31082734	+	891.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	MTD|LTR|ERVL-MaLR	24940.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	4.03546010531411	3.52851032128533	3.95331863621918	3.54781559181134	3.45936339829667	3.72997714638623	3.59690709217557	3.55203339676606	-0.596053671640596	0.24003070613873	0.550466729544276
Merged-chr3-98227263-4	chr3	98227178	98227378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026328, intron 2 of 5)	MIR|SINE|MIR	5122.0	NM_026328	67709.0	Mm.46306	NM_026328	ENSMUSG00000027876	Reg4	2010002L15Rik|GISP|RELP	regenerating islet-derived family, member 4	protein-coding	6.34870071385619	6.24843740597638	6.87741570911352	6.78166495652493	5.57734130423981	5.68602593413601	6.29930040205798	6.23413240743036	-0.925021384113071	0.00161619240989117	0.0198138063285641
Merged-chr14-69089359-4	chr14	69089249	69089449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60060.0	NM_009285	20855.0	Mm.20911	NM_009285	ENSMUSG00000014813	Stc1	Stc	stanniocalcin 1	protein-coding	8.47721588221486	8.31573248845565	8.44334201529228	8.62246082103522	8.44735445974876	8.49206663321851	8.58402131861228	8.31479200998134	-0.0144654017661303	0.927522148673631	0.973537659073704
Merged-chr12-24831573-4	chr12	24831531	24831731	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083341)	promoter-TSS (NM_001083341)	32.0	NM_001083341	67216.0	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	5.47740932502603	5.83955725410616	5.87959829475637	5.88714539049294	5.04618177886608	5.07505976206744	5.02974370333772	5.35822330918875	-1.16371026664788	7.07058569078828e-05	0.00151498259748531
Merged-chr1-136570221-2	chr1	136570121	136570321	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54680.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	2.7351646388281	2.74595184532242	2.73550714581114	2.52048128599433	2.84922068035965	2.71121323983529	2.5989077912374	2.53649430850193	0.0196585620712295	0.976437369843728	0.991537706656775
Merged-chr13-101851019-3	chr13	101850922	101851122	+	674.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82805.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	3.43633652619161	3.3684628690043	3.37736091325258	3.45137604691588	3.44899077519335	3.71783077938177	3.53375902773897	3.74290826221304	0.651676845698101	0.185355671042484	0.483258170364931
Merged-chr5-143919529-6	chr5	143919442	143919642	+	834.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008886, exon 8 of 15)	exon (NM_008886, exon 8 of 15)	9541.0	NM_008886	18861.0	Mm.2950	NM_008886	ENSMUSG00000075569	Pms2	AW555130|Pmsl2	PMS1 homolog2, mismatch repair system component	protein-coding	4.24282440954677	3.65606356613648	3.94897856789633	4.22216718708843	3.61194970373645	4.02315236657416	3.55356587078948	3.68514979192666	-0.910131948792511	0.0655005780090087	0.272466432823429
Merged-chr10-40068888-4	chr10	40068791	40068991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-43623.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	6.06507234441813	6.03960399871711	6.83358244774729	6.82259344747239	6.04617365056097	5.71217010886678	6.2182078315667	6.14692810023101	-0.694190175439518	0.0196997893441917	0.126690576954303
Merged-chr15-78119910-4	chr15	78119799	78119999	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007583)	promoter-TSS (NM_007583)	-619.0	NM_007583	12300.0	Mm.277338	NM_007583	ENSMUSG00000019146	Cacng2	AW060990|B230105C07Rik|B930041E13Rik|stargazer|stargazin|stg|wag|waggler	calcium channel, voltage-dependent, gamma subunit 2	protein-coding	4.07934858489783	4.00974554935322	4.26760403441796	4.00878301568924	4.53327340605323	4.09881384034479	4.37169765105284	4.38935989250052	0.691064992364035	0.0830878887700887	0.313247501841427
Merged-chr17-24480666-3	chr17	24480488	24480688	+	773.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1510.0	NM_019988	56716.0	Mm.289516	NM_019988	ENSMUSG00000024142	Mlst8	0610033N12Rik|AA409454|AI505104|AI851821|Gbl	MTOR associated protein, LST8 homolog (S. cerevisiae)	protein-coding	3.57310327630071	3.8007901733044	3.46309569571198	3.48486131246715	3.5590879446289	3.24939149122717	3.55927047512463	3.67313373953003	-0.203841187969196	0.690091710204406	0.873711152914966
Merged-chr11-21571987-4	chr11	21571883	21572083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008618)	promoter-TSS (NM_008618)	-49.0	NM_001316675	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	8.71812161425519	8.80093932008909	8.92606826829735	8.92096667812454	9.02194699080396	9.13001376306564	9.3167044127742	8.92049803724051	0.320658112720171	0.0409062515695486	0.204514018435689
Merged-chr3-135612972-4	chr3	135612866	135613066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 11 of 24)	intron (NM_008689, intron 11 of 24)	78581.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	5.90544545155591	5.81102251094438	5.88302621476556	6.07077241857392	5.90349156101248	6.2741704212227	6.10782709761242	5.94789556407825	0.197839540428975	0.424901206667009	0.716567599871949
Merged-chr19-4120651-2	chr19	4120551	4120751	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016666, intron 2 of 6)	intron (NM_016666, intron 2 of 6)	924.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	2.74429001734724	2.86294097180952	3.0170053335798	2.88296720719819	3.20188773572407	3.1273481841021	3.12229550664366	3.29119623444166	1.25945444069503	0.0292809240168361	0.164575717829625
Merged-chr2-27266093-4	chr2	27266038	27266238	+	992.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 29 of 29)	L1MEg|LINE|L1	-18835.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	4.39554580717137	4.17083036472535	4.25707607896074	3.99014130827771	4.52565871183812	4.84213699201249	4.75057209899042	4.51894598285128	1.08394751663397	0.00423535793773841	0.0419405318100003
Merged-chr3-105850278-3	chr3	105850192	105850392	+	945.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20566.0	NM_027025	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	3.24512529443973	3.14697805174935	3.31251281640755	3.24693056292867	4.20265592411642	3.42955775206551	3.8686093526243	3.65474542670982	1.90024399458482	0.000385403501378933	0.00623894378545623
Merged-chr2-165901247-3	chr2	165901148	165901348	+	830.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-16410.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	3.55096343364472	3.25308641582629	3.92800025996957	3.53630706352596	3.8828630751377	3.79230069693075	3.71058074077941	4.45133990188758	1.16607988233845	0.0275721459998335	0.158411314885959
Merged-chr17-35809654-4	chr17	35809571	35809771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12042.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	5.7895703283579	5.60850023999058	6.60127030469245	6.04253355739407	5.52255657755447	5.9929680709851	5.70977923961536	6.26475906761871	-0.262116028563114	0.422922966401157	0.714938134013999
Merged-chr10-110733487-4	chr10	110733402	110733602	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11937.0	NM_001358560	52679.0	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e|E2F-7	E2F transcription factor 7	protein-coding	4.78684161036632	4.95686404489544	5.00792166216815	5.13802005377094	4.79590273383955	5.00250566937943	5.22598070220243	4.93531068362794	0.00180647908174732	0.995600250874864	0.998377456742254
Merged-chr4-95637271-1	chr4	95637171	95637371	+	749.0	f0_balb.idr	intron (NM_029347, intron 5 of 10)	intron (NM_029347, intron 5 of 10)	57850.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	3.10526967468524	3.12035818135898	3.30693175045152	3.3039679639369	2.54922913870787	2.68228020245994	2.64782111531087	2.65344811289594	-3.30320122293774	4.73410581577447e-05	0.001077955591366
Merged-chr7-100191037-4	chr7	100190924	100191124	+	885.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12341.0	NM_001190871	57442.0	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	4.10395823284255	4.16925279852749	4.35971187556662	3.7604297695493	4.20013837324759	4.13093498322059	4.21917268822866	3.89898037820975	0.050860432071129	0.908404690954364	0.966039998613106
Merged-chr17-45613206-4	chr17	45613129	45613329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11127.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	7.37760385762504	7.53861405473039	6.93708030629788	6.84308458302698	7.38466756153168	7.43250959236642	7.31252073910185	7.46802529269297	0.270476029658315	0.222980766447258	0.531069778572449
Merged-chr6-54941338-4	chr6	54941243	54941443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 4 of 11)	RLTR28|LTR|ERVL	30318.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	6.08347832334068	5.66184678080115	5.42147353432322	6.14075903775187	5.81592073587266	5.66298099724426	5.62780568421541	5.98098111001635	-0.152019221600489	0.604339250450779	0.828462598614024
Merged-chr2-156439873-1	chr2	156439773	156439973	+	642.0	f0_c57.idr	intron (NM_001291120, intron 2 of 22)	intron (NM_001291120, intron 2 of 22)	18964.0	NM_001291123	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	2.60195317499935	2.31701107214325	2.44856670953745	2.08582683818777	3.30240628513272	2.85463089020728	2.96771743771448	2.86497572847802	4.03490933627148	9.25937480904464e-06	0.000257149059513456
Merged-chr15-9128669-3	chr15	9128588	9128788	+	706.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	11766.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	3.54933360452236	3.39503167128448	3.12864263499568	3.81420287810831	2.86459687310324	2.96361267378555	2.84627671140223	2.85257459668741	-2.76909262458573	7.23319739877198e-05	0.00154424642365684
Merged-chr1-177257542-6	chr1	177257545	177257745	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8878.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	4.38254985514501	4.4070561376223	4.92776420594068	4.60421497842977	4.37394771294592	4.8190277105879	4.5836381777049	5.0729190411058	0.28733695677545	0.465682412847318	0.746129622151024
Merged-chr11-75141265-4	chr11	75141190	75141390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 14 of 18)	intron (NM_001002764, intron 14 of 18)	26862.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	7.02159636539569	7.53359290632878	7.60699549229745	7.46980661666072	7.10693499243347	6.80535649088564	6.90952616003673	6.51312246516761	-0.778039152968782	0.000635389299401242	0.00934254634356586
Merged-chr13-39881289-4	chr13	39881194	39881394	+	959.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	406717.0	NM_172143	218165.0	Mm.364096	NM_172143	ENSMUSG00000047094	Ofcc1	opo	orofacial cleft 1 candidate 1	protein-coding	4.70791184543899	4.70255422632159	4.78468157736961	4.67620821656062	4.63240431708855	4.84332205771536	5.11042410453338	4.62491098627758	0.204009097329779	0.554385671581535	0.80074000106465
Merged-chr5-148711635-1	chr5	148711535	148711735	+	735.0	f0_c57.idr	Intergenic	Intergenic	-30205.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	2.50284339192019	2.52321123028187	2.73027352141985	2.58283766134094	3.3331963531	2.90878453184524	3.18145874233504	2.92360394122432	2.37334842355472	0.000417907553800125	0.0066606004863276
Merged-chr1-58445535-4	chr1	58445418	58445618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027351)	promoter-TSS (NM_027351)	-32.0	NM_027351	70225.0	Mm.340195	NM_027351	ENSMUSG00000026035	Ppil3	2310076N22Rik|2510026K04Rik|Cyp10l	peptidylprolyl isomerase (cyclophilin)-like 3	protein-coding	5.88792104054252	6.11573780378963	6.35197693760676	6.75498722316856	6.31271251939338	6.21036946090148	6.28386774784434	6.19802611197127	-0.131381741694249	0.629971129878224	0.842536537521168
Merged-chr3-90251716-4	chr3	90251645	90251845	+	960.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013901, exon 4 of 4)	exon (NM_013901, exon 4 of 4)	-2113.0	NR_151631	74343.0	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2	CREB regulated transcription coactivator 2	protein-coding	3.8355023463683	4.40709533349979	4.36807280245916	4.38953929898292	4.08039468048185	3.69465672612337	4.30782732054144	4.36521390685653	-0.341945901267613	0.462743419453893	0.744218307499404
Merged-chr4-139169946-4	chr4	139169846	139170046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10709.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	5.27744501756608	5.22393259362749	4.44154379802599	4.85132995190351	5.27731206577838	5.33354016764197	4.93863059119295	4.88557306917742	0.267948758538604	0.466657337077723	0.746440951133739
Merged-chr13-94159700-4	chr13	94159616	94159816	+	883.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	101920.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	5.03709243373278	4.31936474696383	4.27126990834581	4.14590914516421	4.28697979030478	3.90262929630306	4.4609564291977	3.96051608083447	-0.740096459202884	0.120235083575927	0.383810790826571
Merged-chr8-70776778-4	chr8	70776680	70776880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008841)	promoter-TSS (NM_008841)	-68.0	NM_008841	18709.0	Mm.12945	NM_008841	ENSMUSG00000031834	Pik3r2	p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding	8.05015556789773	8.07153401609522	7.66639030246611	7.30708138514098	8.06530425403649	8.30335935506033	7.52059990819687	8.03329709880718	0.26571488330176	0.270360874140212	0.582234559494921
Merged-chr12-69168721-5	chr12	69168668	69168868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081406)	promoter-TSS (NM_001081406)	-46.0	NR_155206	69706.0	Mm.28847	NM_001081406	ENSMUSG00000034883	Lrr1	2410005L11Rik|AU021780|LRR-1|Ppil5	leucine rich repeat protein 1	protein-coding	5.71939159009864	5.67552568061659	5.11583119038762	5.10445026169007	5.48212712393363	6.07257745664159	5.48342552221622	6.05210074264201	0.623392305492317	0.0592464022724483	0.256498976178493
Merged-chr15-78926678-3	chr15	78926576	78926776	+	698.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008495)	promoter-TSS (NM_008495)	-49.0	NM_008495	16852.0	Mm.43831	NM_008495	ENSMUSG00000068220	Lgals1	AA410090|Gal-1|Galbp|L-14.5|L14|Lect14|galectin-1	lectin, galactose binding, soluble 1	protein-coding	3.54896136145241	3.95434222442308	3.69687187254986	3.71378429102871	3.04008681288419	3.30689267995375	3.11360870282204	3.121557124783	-2.27474446324632	0.000108053604697083	0.00216530054299934
Merged-chr1-36566563-4	chr1	36566419	36566619	+	705.287476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-8138.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	3.38329151892507	3.15944534453266	3.38376778393048	3.46471167475853	2.9878123132667	3.49844000385385	3.20089291226382	3.21070025841203	-0.466314699841956	0.409006401905731	0.704787728018206
Merged-chr11-99447285-4	chr11	99447185	99447385	+	941.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-9132.0	NM_023256	66809.0	Mm.28042	NM_023256	ENSMUSG00000035775	Krt20	9030623C06Rik|Ck-20|Ck20|K20|Krt21	keratin 20	protein-coding	5.09229092909037	5.31245680273429	4.98526146188856	5.25738140418	5.22145596864681	4.96435902465042	5.39782621884941	5.52304883622091	0.211735605881611	0.49592608874815	0.766025331518119
Merged-chr16-77013658-4	chr16	77013574	77013774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013918)	promoter-TSS (NM_013918)	-395.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	8.52157674214881	8.80443363343173	8.75198584422706	8.82832117748469	8.99569897508227	8.80672382702365	9.03768542679552	8.58591493191676	0.169376143355904	0.317083881901924	0.628937251269434
Merged-chr3-30855138-1	chr3	30855038	30855238	+	658.5	f0_balb.idr	promoter-TSS (NM_001134386)	promoter-TSS (NM_001134386)	-812.0	NM_001134386	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	3.31690590298318	3.67060393994698	3.49543226211554	3.6282329768929	3.25378593495899	3.66640413953122	3.36737155691642	3.69797225637334	-0.121056416665095	0.818150582506579	0.930222215852522
Merged-chr16-4316225-4	chr16	4316094	4316294	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 3 of 10)	intron (NM_009624, intron 3 of 10)	86965.0	NR_003628	436332.0	Mm.478141	NM_001013830	ENSMUSG00000089645	Gm5766	EG436332	ribosomal protein L7a pseudogene	pseudo	4.42103034357516	4.42738979757232	4.28057903898253	4.73028492748214	4.82518720833733	4.50553979628168	4.56741440831709	4.62422008513248	0.324752823352779	0.390504236956551	0.69058015678842
Merged-chr1-95665965-2	chr1	95665865	95666065	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 1 of 3)	intron (NM_001159745, intron 1 of 3)	1629.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	3.44815472943837	3.28203257458073	3.61031139903063	3.61610977095899	3.59878005731765	3.82307307056807	3.49126605499291	3.32765649392827	0.231777157655172	0.654489917791829	0.855635636382923
Merged-chr1-37357328-4	chr1	37357224	37357424	+	966.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	-11893.0	NM_172971	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	5.31744766246673	5.71083699003099	5.37898011748346	5.88681148495054	5.61508670299563	4.9754850027796	5.32246883682362	5.14946645981471	-0.538799303588311	0.100487846275586	0.347974911030606
Merged-chr4-139579634-3	chr4	139579533	139579733	+	862.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	4913.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	4.19412198340533	3.93577469157726	3.87456708890485	3.9256325603618	4.50148069946031	4.322963818168	4.60933856408667	4.62916176451646	1.31761116175583	0.000770280548319599	0.0109153492233408
Merged-chr10-118599830-4	chr10	118599731	118599931	+	947.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-43306.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	5.20526779242598	4.99208178611929	4.68629396803204	4.89728026351232	5.0695580226362	4.73219890209224	4.96547579338133	5.01955121387368	0.0109327044694681	0.97368361532791	0.990570637473211
Merged-chr2-6872303-3	chr2	6872213	6872413	+	764.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347094)	promoter-TSS (NM_001347094)	-278.0	NM_001347094	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	3.57537275995787	3.82185238100231	3.91488075863525	3.85468411990942	3.28937408627042	3.57561787660655	3.50601534885064	3.45821972509335	-1.13717951622945	0.0233941899590407	0.141968607629952
Merged-chr2-122570661-4	chr2	122570575	122570775	+	937.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40602.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	5.75630267970945	5.63917469006147	6.1464976183943	6.50314542960784	4.62151775745831	4.7770636560838	5.1669912536562	4.95910686341642	-2.09977703751598	1.54563494124002e-09	9.60169037484535e-08
Merged-chr2-148685969-4	chr2	148685860	148686060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355689, intron 2 of 5)	intron (NM_001355689, intron 2 of 5)	4840.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	7.57122982442287	7.89372260116497	7.92272888993719	7.68973394321608	7.92945773512083	7.79511101110954	7.6406659910478	7.82377054368112	0.0393211725684784	0.824588835239889	0.932696938095671
Merged-chr16-36598513-4	chr16	36598399	36598599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36365.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	5.75352699147443	6.0400071162976	5.75453285693848	5.73945828640561	6.35179701161376	6.33657999012211	6.24074436366617	6.15754766184921	0.703884508644649	0.00296039290428976	0.0316440616510649
Merged-chr9-90059522-3	chr9	90059424	90059624	+	748.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 1 of 10)	RMER15|LTR|ERVL	5257.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	3.58689254156639	3.49531234384775	3.42568654297559	3.47511782250058	3.4388815013484	3.41764998078334	3.5726221218979	3.53380411508249	-0.0145983980205938	0.976211812722352	0.991528225629167
Merged-chr15-98631667-4	chr15	98631554	98631754	+	942.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001044741)	promoter-TSS (NM_001044741)	-674.0	NM_001044741	12297.0	Mm.3544	NM_007581	ENSMUSG00000003352	Cacnb3	Beta3|CAB3|Ca(v)beta3|Cchb3	calcium channel, voltage-dependent, beta 3 subunit	protein-coding	5.1268736400603	5.0710734332647	4.66141283365091	4.63653878005061	4.49509550716358	5.17413298890667	5.13153253585454	4.92998487843196	0.129373314490175	0.72881482741029	0.892219366049861
Merged-chr2-44927172-4	chr2	44927091	44927291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-65569.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	8.70747603717371	8.75529803408969	8.71309160372905	8.28084957448288	8.62673573923499	8.94922694263919	8.94938280342197	8.32340489846355	0.141817365994429	0.479705460346682	0.755385933410391
Merged-chr8-115582275-4	chr8	115582155	115582355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	124639.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	6.26019057974167	5.7616299708815	6.68884319542801	6.52489311562175	5.54313282328596	5.63517349235878	5.66413941555378	5.63287301964772	-1.17462391607986	4.94557132693985e-05	0.00112108541872692
Merged-chr14-79034722-3	chr14	79034604	79034804	+	961.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027906, intron 20 of 44)	intron (NM_027906, intron 20 of 44)	164486.0	NR_152203	100043765.0	Mm.435553	NR_152203	ENSMUSG00000115111	Gm4632	-	predicted gene 4632	ncRNA	3.66084152940206	3.64101271452896	4.04998086969338	4.02593261602515	2.89852097256313	3.14191682569457	3.23895956981379	3.49821226073165	-2.40779524365984	0.000119233311759229	0.00234639422109764
Merged-chr11-83066878-4	chr11	83066771	83066971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011408, intron 1 of 1)	intron (NM_011408, intron 1 of 1)	1759.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	6.97111812011083	7.26908194847423	6.97233148395041	7.10693901428849	7.12657236565448	7.28341555755057	7.02439812466043	6.85977580371812	-0.0103017191977758	0.95889075459553	0.985325253500605
Merged-chr1-181861072-7	chr1	181860976	181861176	+	907.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18675.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	4.69144152322864	4.77216444120979	4.8149183863892	4.80402017266502	5.16339656496639	5.13574109142661	4.97236297104918	5.3192466646791	0.741020155092325	0.0180099753081163	0.119216221748016
Merged-chr12-98703813-3	chr12	98703719	98703919	+	845.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146199, intron 8 of 18)	intron (NM_001146199, intron 8 of 18)	30826.0	NM_011877	24000.0	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	4.07667017552262	3.78689818270858	3.8037170369557	4.1811382509837	3.60372113345083	3.81663198650644	3.73668398715735	3.38715245698084	-1.00975916323332	0.039504903634942	0.200165115022177
Merged-chr8-3718733-4	chr8	3718636	3718836	+	821.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029465, intron 3 of 8)	intron (NM_029465, intron 3 of 8)	1915.0	NM_029465	75863.0	Mm.109183	NM_029465	ENSMUSG00000074491	Clec4g	4930572L20Rik	C-type lectin domain family 4, member g	protein-coding	4.1884682934743	4.17847146368929	4.04192466494334	4.51366009047116	4.31740468719217	4.21691536398896	4.21608178804459	4.23204227031063	-0.0361439433068114	0.929756256926724	0.97467003360561
Merged-chr6-89257651-3	chr6	89257525	89257725	+	915.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie8|DNA|hAT-Charlie	28100.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	3.78170684881581	3.72482293315929	3.78225052846795	3.6746890327196	3.61436509773984	3.67758231783231	3.71505208928861	4.17143532631807	0.216713342621275	0.646694527530255	0.851401409677112
Merged-chr9-102636738-3	chr9	102636633	102636833	+	890.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10437.0	NM_181394	69010.0	Mm.2000	NM_181394	ENSMUSG00000035048	Anapc13	1810004D07Rik|APC13|SWM1	anaphase promoting complex subunit 13	protein-coding	3.72419710923886	3.48258771400407	3.90462747926836	3.14755325366367	3.4361854581339	3.79627735925014	3.50140216637368	3.33159605247664	-0.2008163062642	0.719746562805306	0.888022825078143
Merged-chr1-151001565-3	chr1	151001481	151001681	+	729.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8146.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	3.45096099323898	3.27820795176136	3.55802988433475	3.5854013481366	3.28341033735191	3.44892741368773	3.26211782363547	3.74510307799388	-0.106913302312628	0.840834454265511	0.939428850539057
Merged-chr12-84174041-2	chr12	84173941	84174141	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163502, exon 2 of 13)	exon (NM_001163502, exon 2 of 13)	19974.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	4.19277437460198	4.48657023563556	3.99879354191829	4.00583967019235	4.12481170678411	4.1225299336746	4.12944043210934	4.31937104312841	-0.0145172216475418	0.972360834608498	0.990053526064604
Merged-chr3-115729364-4	chr3	115729277	115729477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14322.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	6.65743697132772	7.02831008889833	6.52657932195566	6.97569509467323	6.82763413814204	6.96853736971463	6.75774721798927	6.5730312749756	-0.0529336107402422	0.81299447561389	0.927731304883839
Merged-chr16-75929721-4	chr16	75929609	75929809	+	927.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20443.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	4.84089837354551	4.89144741367004	5.2549615132377	4.91432982876317	4.4795478167865	4.78301437678042	4.45653472038812	4.76499227885762	-0.762781075626899	0.0307656288625869	0.17008808569287
Merged-chr7-97331254-3	chr7	97331132	97331332	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1091.0	NM_001039039	622320.0	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	3.07490572081731	2.86054468475074	3.07530973669723	2.94444031216886	2.84399158884089	3.18670819704115	3.00412931561352	3.23910757442476	0.347774595562652	0.555509492496342	0.801562892315961
Merged-chr4-32486026-3	chr4	32485924	32486124	+	689.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 1 of 4)	intron (NM_001109661, intron 1 of 4)	68589.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	3.12118497752555	3.05674877825433	3.17559810436913	3.28914326488177	2.98054451706964	2.76680905022234	2.80347654251441	2.94295578018522	-1.24509974015423	0.045130516880743	0.2172808169048
Merged-chr1-172277326-4	chr1	172277225	172277425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178405, intron 20 of 22)	intron (NM_178405, intron 20 of 22)	-18901.0	NM_013734	27222.0	Mm.482392	NM_013734	ENSMUSG00000007107	Atp1a4	-	ATPase, Na+/K+ transporting, alpha 4 polypeptide	protein-coding	7.04791992305565	6.76185012370916	7.34541081933984	7.26500595081646	6.40729546107849	6.2286045449162	6.7164831660436	6.59069435456456	-0.890001264054036	0.000135170806663044	0.00261520055652863
Merged-chr7-121080888-4	chr7	121080766	121080966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-2572.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	6.13253036417106	6.04766260651479	6.03153510335209	6.01815045669629	6.37269059203683	6.00093252880346	5.76933856067329	5.81984892560909	-0.039273679931063	0.880377726399182	0.95517036814656
Merged-chr2-160091276-4	chr2	160091174	160091374	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74621.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	5.73825201123352	5.70047694447531	4.97325655312167	5.33406963067136	5.03331351898558	5.36384940141515	5.31575243396888	4.76047806150025	-0.603842313787551	0.0824774295963221	0.311804809923338
Merged-chr2-14244358-3	chr2	14244264	14244464	+	854.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 3 of 29)	ID4|SINE|ID	14950.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	3.51610136404875	3.46792944576622	3.66383542972289	2.9453157915692	3.399885502798	3.40483470857114	3.27796015240746	3.46152329550092	-0.105051171416127	0.85494509258274	0.945409780402481
Merged-chr1-161250787-2	chr1	161250693	161250893	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303408, intron 1 of 5)	intron (NM_001303408, intron 1 of 5)	417.0	NM_007453	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	3.88106887484372	3.93964646600197	4.02434278255838	3.83561764309848	3.94808704798461	3.83950329254734	3.86567357228683	3.97620162162349	-0.0121423286799744	0.977432088890953	0.991888117862217
Merged-chr13-8885765-4	chr13	8885628	8885828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145360, exon 1 of 5)	5' UTR (NM_145360, exon 1 of 5)	122.0	NM_145360	319554.0	Mm.29847	NM_145360	ENSMUSG00000058258	Idi1	4832416K17Rik|IPPI1	isopentenyl-diphosphate delta isomerase	protein-coding	7.69487998675738	7.99278616917091	8.45350604887188	7.89906034663497	7.71147656736687	7.86538183533415	7.79557042399185	8.01924350862779	-0.242658990014958	0.240403488094413	0.55090563340112
Merged-chr3-108134861-4	chr3	108134735	108134935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010306, intron 1 of 8)	intron (NM_010306, intron 1 of 8)	11317.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	6.00391264473947	6.33381830605178	6.17477767905589	6.47050589935348	6.32850216770698	5.76007265772075	6.18207885752145	6.24733700255306	-0.174943981980569	0.495716135185404	0.765874409085869
Merged-chr16-95708836-4	chr16	95708747	95708947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011809, intron 2 of 9)	intron (NM_011809, intron 2 of 9)	6440.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	7.69930904723772	7.8546498306715	8.0233246908567	7.67387183236162	7.64335054662829	7.85320496395339	7.64658314878942	7.24777600962769	-0.263103764214173	0.182060966913296	0.478754158560718
Merged-chr2-163777073-3	chr2	163776973	163777173	+	918.544434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-26834.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	4.2152778209611	4.35683900161733	4.94544995177038	4.93995545519432	3.91820995001632	3.94467344904282	4.14802932489218	4.4383009101518	-1.27690258570663	0.00492791798280488	0.0470635011536386
Merged-chr1-13531701-4	chr1	13531586	13531786	+	773.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58224.0	NM_028173	72265.0	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	3.98645225245428	3.54537063543807	3.93906373045879	3.96393799541018	3.9556031967269	4.01098795900677	4.2217741368776	3.78131684320525	0.348963926203325	0.445519600177028	0.731510070411548
Merged-chr14-122983849-2	chr14	122983749	122983949	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360598)	promoter-TSS (NM_001360598)	-566.0	NR_153663	70551.0	Mm.271988	NM_028651	ENSMUSG00000041594	Tmtc4	4930403J22Rik|5730419O14Rik	transmembrane and tetratricopeptide repeat containing 4	protein-coding	4.98560593820127	4.73235009985073	5.26490871819241	5.10211967129693	5.03527078185218	5.01553154151414	4.96240702335334	4.94801417487524	-0.086353437538418	0.788537379925034	0.91812687233996
Merged-chr12-85465094-4	chr12	85464994	85465194	+	960.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8796.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	5.26273669667683	4.11671616154296	4.28447087213048	5.0284652313303	4.59851407984691	4.61191439575548	4.66493656286788	4.64510372668621	-0.287370900899919	0.521196851107536	0.781250328647867
Merged-chr9-45086398-3	chr9	45086298	45086498	+	994.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005421, intron 3 of 10)	intron (NM_001005421, intron 3 of 10)	7215.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	5.59010805515939	5.37544395550696	5.52500020708719	5.68992616966495	4.14782064409549	4.17786399692496	4.32879946995588	4.28886823683159	-2.85751306272059	2.71999073218959e-14	3.95922740954034e-12
Merged-chr2-76677065-1	chr2	76676965	76677165	+	671.333313	f0_balb.idr	intron (NM_031256, intron 1 of 7)	intron (NM_031256, intron 1 of 7)	1750.0	NM_031256	83435.0	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	3.736623555473	3.68918409460108	4.06118936650109	3.90437063335703	3.73606923150104	3.80140330835326	3.5557486270494	3.73504857962799	-0.436403117816691	0.348480702566891	0.656238106962862
Merged-chr2-90486521-4	chr2	90486377	90486577	+	854.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-7303.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.9601475474683	3.71659016490657	3.91112905126086	4.10626328449006	3.81912154130515	3.98050405463817	3.9911404314318	4.18055771525293	0.141206208266973	0.750553035249875	0.901831808370345
Merged-chr2-24335494-4	chr2	24335383	24335583	+	992.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1377.0	NM_031167	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	5.56430018028911	6.27687967160302	5.79796063020105	4.96387583030792	5.95040147657916	5.94980223014449	5.98337213252526	5.24188471735926	0.133698908966933	0.719919138368843	0.888028373825666
Merged-chr14-67945536-4	chr14	67945416	67945616	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11944.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	4.95774734072507	4.73762039826356	5.05871290589446	4.71953828525541	5.15950822738334	5.09687988432896	5.00167389710051	4.8838857280026	0.363179262385857	0.260197181977394	0.571958099378306
Merged-chr11-75623098-2	chr11	75622993	75623193	+	697.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_008850, intron 10 of 11)	intron (NM_008850, intron 10 of 11)	-7927.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	3.3233607120838	3.14945242803521	3.1606107741389	3.54395725613041	2.96421456988127	2.86221327788512	2.89696299298348	3.21562719713166	-1.30689263271733	0.0344412802457373	0.183508936792524
Merged-chr15-79721022-3	chr15	79720939	79721139	+	930.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013818, exon 12 of 12)	3' UTR (NM_013818, exon 12 of 12)	21497.0	NM_194342	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	3.78208314173712	3.24929050826782	3.47480358709123	3.71439397964807	3.4218667047932	3.70301109820731	3.62287224760142	3.5295965340287	-0.0258280281946213	0.960182694215786	0.985818774399743
Merged-chr8-69038526-4	chr8	69038413	69038613	+	970.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153054, exon 17 of 17)	3' UTR (NM_153054, exon 17 of 17)	-50223.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	4.99899929861883	4.98730133180391	4.58110061283992	4.86871379493914	5.21535182023144	5.31008954651998	5.66846174367116	5.19519956486109	0.9148903110675	0.00456356336821909	0.0443751275994958
Merged-chr10-53344887-4	chr10	53344756	53344956	+	837.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001141927, exon 3 of 3)	3' UTR (NM_001141927, exon 3 of 3)	7170.0	NM_001141927	18821.0	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	3.3886477078772	3.33020750648338	3.50478653262041	3.46670839756708	3.67533814740409	3.44055552042948	3.59602507602779	3.79749821911527	0.679651935117925	0.166082582092187	0.457138132665884
Merged-chr8-39695523-4	chr8	39695443	39695643	+	677.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-52865.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	3.27909557356746	3.27445300910722	3.44871046671925	3.60512582413138	3.41595026703366	3.19452823333493	3.62762670596886	3.15176535377214	-0.185148692441877	0.739017362575712	0.897102750030299
Merged-chr1-65107815-4	chr1	65107718	65107918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001285881, exon 8 of 8)	3' UTR (NM_001285881, exon 8 of 8)	-4455.0	NM_007774	12964.0	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	5.7246404400049	5.60988879834746	5.6226355081606	5.87296483383861	6.02145016807395	5.5341524410415	5.53994423663858	5.81672507919514	0.0592751903451542	0.830181748683798	0.934844759338337
Merged-chr4-149445472-4	chr4	149445379	149445579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	9489.0	NM_022020	63954.0	Mm.46023	NM_022020	ENSMUSG00000028996	Rbp7	1110002J23Rik|CRBP-III	retinol binding protein 7, cellular	protein-coding	7.72520982852714	7.6237549466753	7.7890855647056	7.84522968932188	7.8097572425142	7.52285324159253	7.89482900399738	7.48354405971518	-0.0739494884508694	0.686007886273354	0.871760528240684
Merged-chr16-4370250-4	chr16	4370187	4370387	+	966.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	50211.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	6.04115670437383	5.75081309204051	6.00405247386329	6.37168467469211	5.01483772112606	4.80187368375316	5.12648543208973	5.61756888817438	-1.53104191421583	2.71196987499378e-06	8.62149637035206e-05
Merged-chr3-69699534-4	chr3	69699433	69699633	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22522.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	4.66138591516781	5.26828027517294	4.28821528151551	4.51729415104492	4.97720582535591	5.02334205136992	4.64038133436082	4.61778772515157	0.188535466433954	0.645511097823716	0.850934142345746
Merged-chr14-52106924-4	chr14	52106821	52107021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2900.0	NM_001360180	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	6.51750819540125	5.87599617808634	6.73896017981651	6.92510259615354	5.96784226580098	6.14338184012356	6.43630006849074	6.63621179084392	-0.3837625523721	0.202206802618716	0.50466105033799
Merged-chr9-64830225-4	chr9	64830142	64830342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162917, intron 2 of 34)	intron (NM_001162917, intron 2 of 34)	19231.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	6.11767458210346	6.59583447636059	6.11875543433035	6.25940388042615	6.05670220737247	6.16433172855822	5.95656123156641	6.34240061702305	-0.239968577779344	0.333079344059392	0.643966064504657
Merged-chr13-14618974-4	chr13	14618863	14619063	+	895.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008944, intron 3 of 7)	B3|SINE|B2	5721.0	NM_008944	19166.0	Mm.252255	NM_008944	ENSMUSG00000015671	Psma2	Lmpc3	proteasome (prosome, macropain) subunit, alpha type 2	protein-coding	3.57265883630682	3.83467844128239	3.63406239682267	4.1118312609277	4.07859211347736	3.86706243486218	3.83744840184823	4.03799705556637	0.377839117080681	0.433318434685517	0.722830392839943
Merged-chr5-135446150-4	chr5	135446049	135446249	+	939.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 8 of 30)	L1MC3|LINE|L1	-51603.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	5.36454582599646	4.61921500645913	5.31315424381546	5.35166801588597	4.79789874012685	4.65795300395115	4.76790048854817	5.0423852979247	-0.733445578854341	0.0420198206583689	0.207711669786639
Merged-chr9-74991412-4	chr9	74991343	74991543	+	758.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153584, intron 1 of 11)	Lx10|LINE|L1	15332.0	NM_153584	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	3.31452695225318	3.30842609558298	3.37436928076002	3.29767704759662	3.55761414594627	3.60143708565085	3.30317829539949	3.63405800935648	0.712860578368235	0.155663857923399	0.441434173033052
Merged-chr9-52172503-1	chr9	52172403	52172603	+	810.0	f0_balb.idr	Intergenic	Intergenic	-4392.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	3.61219945691783	3.65924124123745	3.51390984402679	3.36632633138516	3.13492195103257	3.34011015633539	3.33704214388758	3.16031677744126	-1.07182063608204	0.0480650751850014	0.226211583350517
Merged-chr8-115778631-4	chr8	115778538	115778738	+	828.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71744.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	3.73230567064635	3.84616185004522	3.90162535114264	4.06540052010468	3.91132678882193	4.17555094056935	4.24722868747374	4.30348823051561	0.673750394500617	0.125339389738878	0.392915195200547
Merged-chr5-92511450-4	chr5	92511332	92511532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-5775.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	5.31812753550934	5.22955653779965	5.43219323053559	5.12210184489585	5.33708209002488	5.36957261041492	5.20133508811087	5.31534960306611	0.0768590274765167	0.790117766094133	0.918828686312538
Merged-chr12-76534508-6	chr12	76534420	76534620	+	850.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	960.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	3.57186096889932	3.63667654910393	3.92259334058748	3.89470296677228	3.51071013033648	3.56711875476822	3.86091319735063	3.62663936304762	-0.388235804244653	0.424351535534812	0.716123917662497
Merged-chr5-90655040-4	chr5	90654949	90655149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14522.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	6.69745462137813	6.7140762571363	6.85624699499922	7.05752646708746	6.82331181871073	6.78078991833231	6.78059153347525	6.83785845436714	-0.0672767114057049	0.743013023451233	0.898691548174051
Merged-chr18-4921515-4	chr18	4921421	4921621	+	976.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109035.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	5.78529236947867	5.55012148294032	5.33124830803224	5.43813502428384	4.76957597198728	5.20376358432864	5.47407277403931	5.49803852370615	-0.489524297118421	0.135199982900037	0.409349593042737
Merged-chr12-111420105-2	chr12	111420005	111420205	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 2 of 13)	intron (NM_001289487, intron 2 of 13)	2660.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	2.95866801453206	2.87564580624946	3.14672984333946	3.10389678974218	3.18074836001099	3.25787430719803	3.19115203234059	3.25644567984262	0.740819067252729	0.186659049328357	0.484657293989922
Merged-chr7-14534128-4	chr7	14534043	14534243	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045120, intron 12 of 12)	intron (NR_045120, intron 12 of 12)	28028.0	NM_001244031	627280.0	Mm.372763	NM_001039146	ENSMUSG00000100586	Vmn1r90	B430211C08Rik	vomeronasal 1 receptor 90	protein-coding	5.24473435190437	5.03224228977426	5.43800307323418	5.27907613826281	5.01156292814166	5.04588096778076	4.84514412714216	5.21195965834569	-0.418132152186745	0.17845577116661	0.474282728191057
Merged-chr14-100211287-4	chr14	100211207	100211407	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61511.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	4.81543772862874	5.06311844854612	5.00319361773549	5.65526124066733	5.12778594401916	4.47152525631519	5.28388915987551	4.89102540018727	-0.398339629775152	0.314769509540057	0.626747759862137
Merged-chr13-54565422-4	chr13	54565341	54565541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252648)	promoter-TSS (NM_001252648)	-59.0	NM_133797	97820.0	Mm.24593	NM_133797	ENSMUSG00000025871	4833439L19Rik	4930558H15Rik|C81457|Kiaa1191|P33monox	RIKEN cDNA 4833439L19 gene	protein-coding	6.6726583282689	7.55135759401607	6.50377053104681	6.48188695357359	7.38527261804088	7.39704109370791	6.76046534762029	6.40484525920795	0.228574145490099	0.637897464089552	0.847011595650305
Merged-chr16-92870390-4	chr16	92870304	92870504	+	975.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44330.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	5.37551444036334	5.87605376756454	4.90866641549768	4.82514498460872	5.45463436604229	5.43406356199737	4.96275357562663	4.98338754527439	-0.149185801181049	0.701195401780106	0.879597990737905
Merged-chr6-115480122-2	chr6	115480025	115480225	+	784.0	f0_balb.idr|f0_c57.idr	intron (NM_001308354, intron 7 of 7)	intron (NM_001308354, intron 7 of 7)	58059.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	4.00510049263074	4.44239140903848	4.17210571869201	4.45352576770778	4.59355982984568	4.81766420795273	4.47404197465171	4.68087957137218	0.779482068074719	0.0469983120203106	0.222960067401606
Merged-chr19-4037957-4	chr19	4037862	4038062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013541)	promoter-TSS (NM_013541)	-50.0	NM_013541	14870.0	Mm.299292	NM_013541	ENSMUSG00000060803	Gstp1	GstpiB	glutathione S-transferase, pi 1	protein-coding	6.26527844628057	5.83097667634978	5.69406555670328	5.58699360298113	5.74599968801976	6.11226851339387	5.79189514713814	6.11789080823157	0.143453738641375	0.613538634142825	0.833337661186734
Merged-chr3-18339319-4	chr3	18339218	18339418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-95980.0	NM_007825	13123.0	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding	5.45052319812409	5.40191264721756	5.71617405156311	6.04287223314997	5.46702003779578	5.50557339431615	5.45319477050938	5.61288159077762	-0.325660077922871	0.274898085873875	0.586680584505173
Merged-chr6-87130853-4	chr6	87130771	87130971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	26125.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	5.15450678249107	5.06466665472215	4.90226926507886	5.24864361157873	5.1718944747906	5.00084293196583	5.58855832132687	5.54334722548304	0.434620066067051	0.175925822716368	0.470795704005126
Merged-chr10-79555084-4	chr10	79554988	79555188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027422)	promoter-TSS (NM_027422)	40.0	NM_001316699	70427.0	Mm.334193	NM_027422	ENSMUSG00000042570	Mier2	2700087H15Rik|mKIAA1193	MIER family member 2	protein-coding	5.67728122612245	5.5390373553054	5.22315832000293	5.46064088878812	5.48708625483801	5.58828346888476	5.57615425676371	5.40959606678297	0.0540155097684966	0.845241606133084	0.941451408856064
Merged-chr12-111908144-4	chr12	111908075	111908275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011625)	promoter-TSS (NM_011625)	-120.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	6.99986103942392	6.94008079674315	6.74163988745115	6.8753452666369	7.05942844385171	7.21295596470758	7.03752987447738	6.79582632136393	0.198015343919184	0.319725424321812	0.631580384031367
Merged-chr14-120480715-3	chr14	120480669	120480869	+	874.6889039999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029519, intron 1 of 1)	intron (NM_029519, intron 1 of 1)	2308.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	3.95935706930661	4.00962371498197	3.66462300760413	3.82389757942191	3.40583382035885	3.72589819385039	3.70383229619781	3.71671785077993	-0.712545149790951	0.137362922004799	0.412233553646159
Merged-chr9-55388335-3	chr9	55388195	55388395	+	922.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172923, intron 3 of 10)	intron (NM_172923, intron 3 of 10)	61382.0	NM_001357568	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	4.56357953503566	4.5653118219616	4.84759203794274	5.08699045677234	4.05731098128907	4.16048579477997	4.23342722755553	4.52105394024487	-1.26337972384249	0.00180750303147715	0.0216011179109321
Merged-chr10-121591243-4	chr10	121591141	121591341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 24 of 24)	MTD|LTR|ERVL-MaLR	-4447.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	6.1324150997744	6.19125999996358	6.4285708849288	6.46805775958054	7.11232004597373	7.35130681459385	7.2289423253337	7.27004458606354	1.28317533116211	1.0458838564305e-09	6.70675378530326e-08
Merged-chr8-46400874-2	chr8	46400774	46400974	+	988.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-70163.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	3.20522978068942	3.35624417201608	3.20559726272942	3.25836975039445	3.63246181972984	3.31706132401486	3.31452658427753	3.58563626911358	0.759772541670377	0.14517475778898	0.424596050649701
Merged-chr11-63132973-4	chr11	63132867	63133067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001302260, exon 1 of 5)	5' UTR (NM_001302260, exon 1 of 5)	164.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	5.62177226377454	6.45139966215564	6.35051023915174	6.38646098468096	6.31886931418062	6.20440659737971	6.68516990185327	6.46520097102534	0.265991926471994	0.33064423097544	0.641981554220558
Merged-chr9-7222242-2	chr9	7222142	7222342	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37737.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	2.98911603725974	3.0161778437213	3.35207054259042	2.68515498070484	3.21604752447468	3.2980187063683	3.337525628239	3.45132793201175	1.17872899689353	0.0514061934919905	0.235504335817451
Merged-chr4-149155917-4	chr4	149155852	149156052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081274, intron 8 of 12)	intron (NM_001081274, intron 8 of 12)	10130.0	NM_001356332	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	6.90660527486998	7.04699436437796	7.32310463771911	7.3443877160501	6.74734503144783	6.83637135600853	6.77635882228802	6.58699982737334	-0.609466710656153	0.00349042879715944	0.0359909070480968
Merged-chr13-44679421-1	chr13	44679321	44679521	+	703.666687	f0_balb.idr	Intergenic	RLTR45|LTR|ERVK	-51353.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	3.61654698021707	3.20475170430125	3.40332120682654	2.78363037226953	2.50143613085435	2.70389509342653	2.58515293192845	2.8941652158796	-3.0399676057317	0.000231988180099127	0.00410763350031735
Merged-chr11-94992049-4	chr11	94991987	94992187	+	807.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172261, exon 1 of 10)	exon (NM_172261, exon 1 of 10)	875.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	3.30240796295749	3.60209704916514	3.84603750322968	3.32473936386198	3.64015082391053	3.54701455550059	3.53385070649797	3.88700300883898	0.412328237143612	0.425209727839606	0.716745286615087
Merged-chr14-106155408-4	chr14	106155326	106155526	+	958.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49228.0	NR_073203	212085.0	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	4.66212541140452	4.75604390111535	4.7412755957047	4.99815164022663	4.4016791004115	4.71264937917614	5.10474536426042	4.61884247997347	-0.165358748087012	0.656933772226372	0.856941849747113
Merged-chr6-134141892-1	chr6	134141792	134141992	+	608.0	f0_balb.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	106192.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	3.79351471200328	3.50953128777607	3.88496142602471	3.54912858134055	3.77844944311467	3.59005058219733	3.57609769167151	3.47277652335878	-0.212624147686851	0.666702622109663	0.862099084982087
Merged-chr9-114748546-4	chr9	114748412	114748612	+	824.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026036, exon 4 of 4)	3' UTR (NM_026036, exon 4 of 4)	17309.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	3.54405356697567	3.15510973275582	3.20094489163388	3.17273937889231	3.06862686003696	3.71365015033419	3.42550986763665	3.59169158500811	0.669458250011479	0.236562539413293	0.546577661329488
Merged-chr7-126725853-4	chr7	126725752	126725952	+	955.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-21036.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	4.87817114534746	4.77482817192279	4.35462032282992	4.88784081466033	4.72646511363293	4.79687282840584	4.23415030264563	4.77248124127689	-0.204092773807281	0.594620509650125	0.82351382929052
Merged-chr2-102944238-4	chr2	102944127	102944327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42562.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	8.66079934848897	8.8645135827301	8.72633476324541	8.66352071928369	8.40490161187988	8.62482271981717	8.50316007570465	8.5561409074822	-0.262751618485279	0.0800085108054403	0.306376468184874
Merged-chr2-117352471-4	chr2	117352377	117352577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-9600.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	6.95380144511596	6.50403909072996	6.85257519445357	6.72199227611302	6.84442689166094	6.71288508007363	6.97958216110086	6.53074669438355	0.0257099201412794	0.906667561115614	0.965374636270914
Merged-chr10-121297559-4	chr10	121297436	121297636	+	909.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361015, intron 6 of 12)	intron (NM_001361015, intron 6 of 12)	13860.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	4.14850163594578	4.3333043815024	4.5766476565768	4.7700093155122	3.59997094054759	3.5567515442723	3.9335218743459	3.89286958216943	-2.01455007497841	2.77513277668399e-05	0.000679268142749621
Merged-chr6-108784321-6	chr6	108784220	108784420	+	981.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026011, intron 1 of 6)	intron (NM_026011, intron 1 of 6)	1261.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	4.64278614586533	4.74765279935161	4.72460180355887	4.73021705770395	4.44413448043713	5.17563522560636	4.91674777227735	4.93757332307393	0.346802886535202	0.334787641709918	0.645218356192842
Merged-chr12-106658445-4	chr12	106658352	106658552	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57872.0	NR_015512	71033.0	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	6.42017401726727	6.5895416831139	6.88525351313011	7.02028848187624	5.35742074569366	5.46259667221496	5.98468475370826	5.58544706540448	-1.770877259662	1.7251419885093e-10	1.26853183471181e-08
Merged-chr3-146047931-3	chr3	146047871	146048071	+	593.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172864, intron 19 of 22)	intron (NM_172864, intron 19 of 22)	60065.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	3.10521787681418	2.93902366592366	2.93344694548026	3.00502298247735	2.69100228776095	2.8411844067455	2.72743108605019	3.15631465715771	-0.588095490401513	0.353752551419183	0.660571815517034
Merged-chr5-73630389-4	chr5	73630297	73630497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153568, intron 1 of 4)	intron (NM_153568, intron 1 of 4)	2024.0	NM_153568	231296.0	Mm.168948	NM_153568	ENSMUSG00000067206	Lrrc66	-	leucine rich repeat containing 66	protein-coding	6.59476423698242	5.80474771394382	6.47186097738433	6.92685799468571	5.96312290636975	5.83730658764079	6.47061227890022	6.45080845153932	-0.461387518880733	0.140552003661156	0.416952199241371
Merged-chr3-81134949-4	chr3	81134849	81135049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357746, intron 2 of 6)	intron (NM_001357746, intron 2 of 6)	98533.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	6.16788020445743	6.48375059303238	6.94170791534028	6.77976571223585	6.59695327614505	6.52840403842465	6.6468175164862	6.07457505389692	-0.214539615923655	0.414348877539635	0.709044594374843
Merged-chr14-51883751-4	chr14	51883653	51883853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1089.0	NM_001029990	52535.0	Mm.5750	NM_001029990	ENSMUSG00000004561	Mettl17	2310032K15Rik|D14Ertd209e|Mett11d1	methyltransferase like 17	protein-coding	6.97558222986586	6.82377315857731	6.31887999734847	6.27014550100392	6.85881569688645	6.98389971504651	6.96550278097527	7.14249872918339	0.517348359856035	0.03353752310504	0.180313268154214
Merged-chr5-137883112-4	chr5	137883017	137883217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11359.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	6.24369912025394	6.19271300956174	6.48536451266332	6.32912933165914	6.08275895480884	6.21634519850402	6.15502620272745	6.05733225382676	-0.290236906005339	0.199834198627669	0.501834547845007
Merged-chr1-51498147-4	chr1	51498048	51498248	+	914.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19749.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	4.42513548188229	4.8377950071472	4.59325768446747	4.45486797925578	4.48907557516227	4.64344128835147	4.53243438146921	4.46695496353714	-0.114946069159917	0.752818556285229	0.902664488281022
Merged-chr2-76114957-4	chr2	76114864	76115064	+	943.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081033, intron 9 of 19)	intron (NM_001081033, intron 9 of 19)	-132997.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	4.26922517402743	4.21075773849582	3.64146707549428	4.03090360445738	4.67860981221622	4.4881785645037	4.56862828054369	4.47697016331549	1.18985298396325	0.00406338166689396	0.0405591703362565
Merged-chr4-144973473-4	chr4	144973374	144973574	+	774.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001276502, exon 69 of 69)	3' UTR (NM_001276502, exon 69 of 69)	80337.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	3.94904918873835	3.84661724068655	3.89539911934544	3.87144820302864	4.6386999533983	4.07374791033842	4.08206443783756	4.42862110896597	1.15238397219573	0.00677100492013822	0.0594343765212133
Merged-chr13-92320994-3	chr13	92320893	92321093	+	793.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311120, intron 8 of 23)	L1MA9|LINE|L1	-33790.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	3.30789921372399	3.59811204784455	3.56082460354754	3.46511921619581	3.21670531891212	2.95299711695474	2.83879260686251	3.12738185455035	-1.7180330813027	0.00599356640414746	0.0542009989938778
Merged-chr6-114916500-4	chr6	114916390	114916590	+	887.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	5331.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	4.66957191266135	4.33062230717294	4.17774415606588	4.71626956881977	4.5680716458226	4.02428086376775	4.25563590592768	4.27159681016024	-0.458143549204789	0.279233476369998	0.591411301649658
Merged-chr15-76233083-3	chr15	76233013	76233213	+	865.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163575, exon 11 of 11)	3' UTR (NM_001163575, exon 11 of 11)	-1735.0	NM_011117	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	3.43371982338832	3.35314545249592	3.26487260709938	3.38249996434052	3.315134827907	3.24842164747919	3.52063482920491	3.32209882240824	-0.022023833763451	0.966042731560148	0.988022131369328
Merged-chr8-57531184-4	chr8	57531082	57531282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 11 of 11)	intron (NM_001167981, intron 11 of 11)	19339.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	5.7737315842728	5.88124810314507	5.9679244045915	5.94832807094185	6.29922287634523	6.16549825525323	6.08441300890946	6.11133735644392	0.427663317751646	0.0680382377140644	0.278439241203322
Merged-chr9-108853081-4	chr9	108852952	108853152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134420)	promoter-TSS (NM_134420)	-991.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	5.97700579797847	6.04836937673566	6.10171897424462	5.94620098022037	5.84386927517625	6.0635799067478	5.76238644581079	5.78759138043793	-0.235996635618539	0.33107986496981	0.642297043289104
Merged-chr11-114909162-4	chr11	114909058	114909258	+	963.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19117.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	4.6748563159529	4.6143763909196	4.45631769234619	4.80756377912215	4.79086455324421	5.06805332997186	4.87362654923181	4.89406852819565	0.504077101483651	0.140151901526279	0.416213336303895
Merged-chr13-73328494-4	chr13	73328384	73328584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010888)	promoter-TSS (NM_010888)	-2.0	NM_010888	407785.0	Mm.29897	NM_010888	ENSMUSG00000021606	Ndufs6	BC059730|IP13	NADH dehydrogenase (ubiquinone) Fe-S protein 6	protein-coding	7.62367772663988	7.4693529075594	7.7105696200688	7.73266679641698	8.08637203414925	7.87145660206354	7.99796219228185	8.01824189747922	0.464623714983047	0.00556716864598253	0.0514029701715385
Merged-chr14-37135381-4	chr14	37135296	37135496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199122)	promoter-TSS (NM_001199122)	-74.0	NM_078478	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	8.9050282817807	9.06702651294627	9.14087640794143	9.31373790489075	9.0590096583014	8.99634213404195	9.12903887337585	9.02878387297774	-0.0816801364815322	0.593683083237611	0.822968142513241
Merged-chr12-99297952-3	chr12	99297849	99298049	+	921.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 3 of 5)	MLT1A|LTR|ERVL-MaLR	-135141.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	4.02078824386605	3.77330878663943	3.97835278350813	3.94728267777402	3.52708934110444	3.74510223808002	3.66925284266516	3.5664947558248	-0.937256956036129	0.0443065932220104	0.21472794113475
Merged-chr11-70396458-3	chr11	70396356	70396556	+	798.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029231, intron 12 of 16)	intron (NM_029231, intron 12 of 16)	13575.0	NM_029231	75273.0	Mm.340601	NM_029231	ENSMUSG00000018921	Pelp1	4930563C04Rik|MNAR	proline, glutamic acid and leucine rich protein 1	protein-coding	4.02495292957817	4.47002491439065	3.92403984012306	3.88495492515447	3.95792828735251	3.93551267619174	4.18807123578541	4.07099041957235	-0.141386828510335	0.751460540319906	0.902145552360104
Merged-chr5-72820268-3	chr5	72820173	72820373	+	918.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	48175.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	3.79551836252424	3.7186624769899	3.48905774600707	3.65683081530434	3.58314365502562	3.71688797147372	3.53186056394046	3.16259204973679	-0.494781961728064	0.342327862077952	0.651372831876779
Merged-chr19-57622017-4	chr19	57621923	57622123	+	951.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181415, intron 1 of 28)	L1ME1|LINE|L1	10989.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	5.80346272727985	5.88791816223379	5.67001340029479	5.80877262609846	5.10702462257518	5.05999369579308	4.97630250519703	5.03596786142657	-1.33452882280721	2.61049254139678e-06	8.3361260028749e-05
Merged-chr4-43460860-4	chr4	43460754	43460954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4-int|LTR|ERVK	-6228.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	5.47611153373412	5.35434362715227	5.56224540263221	5.89313990075987	5.66646698036617	5.62394045480721	5.78115205600172	5.76074335571584	0.16405111317101	0.56180977214712	0.805159621706194
Merged-chr9-24542098-4	chr9	24541998	24542198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SYNREP_MM|Satellite|Satellite	-38958.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	8.84363644648621	8.34320122483098	9.34311065892504	8.5671052696535	8.43117321505061	8.55487866659395	8.14621233429648	9.19340776566594	-0.235035569861876	0.548945553050818	0.797774419547637
Merged-chr19-21319792-3	chr19	21319685	21319885	+	718.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1-int|LTR|ERVL-MaLR	47507.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	3.90942784211679	3.70931962318163	3.91002829360284	3.99719281231275	3.40230014238009	3.72090552795675	3.64561789122089	3.6578563220297	-0.884353712414154	0.0640803697032807	0.268921445381158
Merged-chr11-59563006-4	chr11	59562888	59563088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 7 of 9)	MTE2b|LTR|ERVL-MaLR	8750.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	6.72658481709211	6.69826558470075	6.40434624013721	6.16137994836161	6.23763507516275	6.45175717965471	6.37154685743845	6.27041470698672	-0.256843045413187	0.292066487660834	0.604488172040016
Merged-chr18-64887647-4	chr18	64887559	64887759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114386)	promoter-TSS (NM_001114386)	-97.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	5.8309796875555	5.81387964284926	5.92213912429239	6.2104074839477	5.83800203650776	5.60170597426251	5.87007403460488	5.31827636777447	-0.464056329882363	0.0988568453839882	0.344693043736366
Merged-chr2-157204527-10	chr2	157204349	157204549	+	907.7700199999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001139516)	promoter-TSS (NM_001139516)	85.0	NM_011249	19650.0	Mm.244671	NM_011249	ENSMUSG00000027641	Rbl1	AW547426|PRB1|p107	RB transcriptional corepressor like 1	protein-coding	4.9736112444731	5.02067906616902	4.67888555322603	4.63854121959273	4.86498474307846	5.00827840628413	4.81222060922315	4.8319928467812	0.105637895886511	0.753171244868077	0.902768018969164
Merged-chr6-42245877-4	chr6	42245783	42245983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029555)	promoter-TSS (NM_029555)	-52.0	NM_029555	76263.0	Mm.267014	NM_029555	ENSMUSG00000029864	Gstk1	0610025I19Rik|AW260476|DsbA-L	glutathione S-transferase kappa 1	protein-coding	7.45540236166346	7.65543067552907	7.30446862924799	7.78054559248625	7.24925440397726	7.34470263805993	7.82324663155321	7.46107200166526	-0.114002371061373	0.591333121861617	0.821549075923235
Merged-chr4-35120315-4	chr4	35120207	35120407	+	960.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-31748.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	4.73183686364529	5.25783733607708	4.84909192420328	4.42603782890589	5.12801462145859	4.54627786705202	5.33338754709222	4.7694520387436	0.274634241343424	0.49218786787059	0.76335556384627
Merged-chr7-83610170-3	chr7	83610042	83610242	+	802.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177695, intron 14 of 22)	RMER15|LTR|ERVL	-21875.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	3.06342620241091	2.91416745661285	3.13450714663847	3.15081219948466	3.6448033450701	3.76600127163578	3.67358059055928	3.54534147275142	2.0363760880852	0.000244868529807349	0.00428875420353281
Merged-chr5-31228919-3	chr5	31228834	31229034	+	974.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8389.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	4.96236875050719	4.52604010847439	4.54123873642785	4.82244944778201	4.75932578518316	4.39165879564286	4.39019610002458	4.4521337091896	-0.456351380023334	0.227399964141522	0.536087902746643
Merged-chr1-105170333-4	chr1	105170238	105170438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-185669.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	6.37876537966687	6.71075465040819	6.84322840498394	6.6813221839336	6.49909417390696	6.75334107688918	7.12410684935322	6.8647971869317	0.224075692511652	0.33574086781993	0.645936136188198
Merged-chr6-29474619-4	chr6	29474502	29474702	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3165.0	NM_001145360	668210.0	Mm.420607	NM_001145360	ENSMUSG00000090685	Gm9047	EG668210	predicted gene 9047	protein-coding	4.61875107175243	4.91997971478666	4.86301967845454	4.88993504860558	4.56868738976555	5.26997812593095	4.80251494428163	5.31939910777925	0.368000354521424	0.31544288805947	0.627246321633283
Merged-chr9-78671652-4	chr9	78671549	78671749	+	864.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153098, intron 15 of 32)	intron (NM_153098, intron 15 of 32)	56103.0	NM_153098	235505.0	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	3.5406169362878	4.01584521435967	4.01037921514795	3.95696277928054	4.02029893698123	4.13572861246482	4.68889532255976	3.90516271127457	0.838968892018994	0.0820713561675574	0.311039377844805
Merged-chr8-11554860-1	chr8	11554760	11554960	+	906.0	f0_c57.idr	promoter-TSS (NM_001302458)	promoter-TSS (NM_001302458)	-902.0	NM_001302458	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	4.3699196386353	4.19374767084994	4.54435791301156	4.59720720241243	4.43778259698116	4.6345176022976	4.70996831169942	4.83033696188831	0.459816839730382	0.22139070808348	0.529463056908312
Merged-chr14-52195840-3	chr14	52195728	52195928	+	811.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033618, intron 1 of 25)	B3|SINE|B2	1411.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	3.51575016118716	3.5707645375386	3.27509878641122	3.57217720449148	3.79988255774918	3.6861599007124	3.44716546532171	3.45816667313392	0.376739085928213	0.456975117717759	0.740285122610765
Merged-chr2-31689234-4	chr2	31689151	31689351	+	888.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153862)	promoter-TSS (NR_153862)	714.0	NM_001283046	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	3.53516870230501	4.1476754196954	4.30143498879862	3.94852758217993	4.12533051734689	3.90784414866823	3.98155757660123	4.17774922557814	0.116360858221405	0.803411350811958	0.924122552203287
Merged-chr11-113101779-4	chr11	113101653	113101853	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	100085.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	5.78388313329741	5.91622336772162	5.64342421707806	5.65606442345218	6.69369126919927	6.22831895264837	6.90110968772312	6.24736213746746	1.23007456531757	2.70562791227183e-06	8.60641408282802e-05
Merged-chr2-148527988-4	chr2	148527938	148528138	+	862.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84503.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	3.76851865412433	3.78055699908167	4.38415732957657	4.0736823852779	3.68942837580986	4.14932867130311	4.00884197230561	4.02383622787243	-0.15383349322363	0.744640211003558	0.899296643574982
Merged-chr17-25823641-4	chr17	25823542	25823742	+	955.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173741)	promoter-TSS (NM_173741)	15.0	NM_173741	268933.0	Mm.95512	NM_173741	ENSMUSG00000025737	Wdr24	BC037651	WD repeat domain 24	protein-coding	4.59705119890304	4.6044193794507	4.51440551338402	4.63689101654614	4.66678517187922	4.84724161770569	4.72711696076302	4.46784562291633	0.191317684140048	0.581854070541679	0.816420227529328
Merged-chr4-28812963-4	chr4	28812856	28813056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122889)	promoter-TSS (NM_001122889)	-175.0	NM_001290434	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	6.24660639759966	6.44015635046758	6.68984843779716	6.69947728356364	6.42818980449273	6.44565005750688	6.93557147775066	6.20189299021657	-0.0126295666824166	0.96037222960337	0.985883800393479
Merged-chr14-20794064-4	chr14	20793973	20794173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039138)	promoter-TSS (NM_001039138)	15.0	NM_001039138	12325.0	Mm.235182	NM_178597	ENSMUSG00000021820	Camk2g	Camkg	calcium/calmodulin-dependent protein kinase II gamma	protein-coding	7.16383551994943	7.33179450797022	7.06856470561066	7.24928972587698	7.47096071765688	7.62153669778971	7.43543054024563	6.93158790198951	0.242524258179973	0.247401301906716	0.55850863521783
Merged-chr5-43868019-5	chr5	43868001	43868201	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007646)	promoter-TSS (NM_007646)	-708.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	5.80922263519182	5.98023822059772	5.9321270772812	5.01754014993527	5.17812848922885	5.36845506607353	5.26256434525369	4.87320398927877	-0.958818661175294	0.0072925200767069	0.0627204309497245
Merged-chr8-35135837-3	chr8	35135721	35135921	+	961.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-170131.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	3.69191838951489	3.74622348618054	3.95519163195809	3.55475585897213	4.88728758667637	4.78730601744351	5.16628241729632	4.68073405182368	2.83066699401647	2.48139681103528e-12	2.47718574491837e-10
Merged-chr11-84819556-4	chr11	84819465	84819665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145433)	promoter-TSS (NM_145433)	-50.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	8.37675156096373	8.38533446149543	8.22763631543381	8.11898320147061	8.19551179881641	8.42297348332585	8.34945031580559	8.35146969739393	0.0663555430355466	0.67910105997911	0.868317902828816
Merged-chr4-12241105-4	chr4	12241009	12241209	+	932.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69094.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	5.32792832461043	5.12900737634034	4.5435935567116	5.32842430705672	5.13525562720383	4.94623493659752	4.97131003803355	4.80593712891642	-0.295760261830384	0.405875202526445	0.702456276834042
Merged-chr5-114014862-2	chr5	114014762	114014962	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286397, intron 4 of 9)	MIRc|SINE|MIR	10054.0	NM_001286396	13142.0	Mm.20115	NM_010018	ENSMUSG00000042096	Dao	AI987963|DAAO|DAMOX|Dao-1|Dao1	D-amino acid oxidase	protein-coding	2.90395481818676	2.9919466080474	2.84321409716212	2.49798719311959	2.86061084744017	2.59277724132917	3.15765963063946	2.63982809488639	0.0547544001566606	0.937779804594792	0.977460307804652
Merged-chr10-62782071-4	chr10	62781963	62782163	+	733.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026201, intron 5 of 24)	B2_Mm1a|SINE|B2	10305.0	NM_026201	67500.0	Mm.196371	NM_026201	ENSMUSG00000020074	Ccar1	2610511G16Rik|9430036H15Rik|Carp1	cell division cycle and apoptosis regulator 1	protein-coding	4.17591345645862	3.53033636360058	3.82159746950474	3.71187389514345	3.94220386286308	3.52064456856706	3.80566015516093	4.09416750603597	0.100958535894915	0.839499973523608	0.938943388818425
Merged-chr2-101629034-4	chr2	101628932	101629132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026592)	promoter-TSS (NM_026592)	-46.0	NM_026592	68170.0	Mm.31263	NM_026592	ENSMUSG00000027165	B230118H07Rik	NWC	RIKEN cDNA B230118H07 gene	protein-coding	8.1895476253109	7.99416142473896	8.23181035347701	8.4126327036252	8.07615912431735	8.04470534716321	8.34917658227411	7.80658435343098	-0.174510086304625	0.350944315360797	0.658404465552614
Merged-chr3-10077320-4	chr3	10077195	10077395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10982.0	NR_045710	100041480.0	Mm.455632	NR_045710	ENSMUSG00000049230	Gm9833	-	myelin basic protein expression factor 2, repressor pseudogene	pseudo	5.49594188744552	6.19799705340524	5.58061921481908	5.50298911595568	5.3503476716292	5.70141498234374	5.57898316072959	5.54940731378583	-0.310252403817708	0.312176467535575	0.624102060221972
Merged-chr2-58183861-4	chr2	58183751	58183951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19877.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	6.414474777557	6.39708966931345	7.01597331491983	7.20600883854714	6.40632065189583	6.79982901920288	6.87154540293917	6.6951942215223	-0.172507949022109	0.522508066856105	0.781971587334536
Merged-chr15-8342067-3	chr15	8341939	8342139	+	727.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 11 of 45)	intron (NM_201232, intron 11 of 45)	102424.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	2.86265923567804	2.80318101117414	2.80509940587429	2.43729388026611	2.66543234429126	2.71980080422475	2.6056915201084	2.612650891595	-0.389509469166659	0.567714919054362	0.808331754798167
Merged-chr5-110286327-4	chr5	110286278	110286478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008993)	promoter-TSS (NM_008993)	59.0	NM_011132	18973.0	Mm.35061	NM_011132	ENSMUSG00000007080	Pole	-	polymerase (DNA directed), epsilon	protein-coding	7.3457839834362	7.55323368516352	7.66282985107622	7.38574688944405	7.57039380224388	7.66418264357599	7.95420672943044	7.2880050020416	0.199451940167925	0.327695672590458	0.639130025464207
Merged-chr2-155133511-4	chr2	155133416	155133616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008395)	promoter-TSS (NM_008395)	35.0	NM_008395	16396.0	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	5.23447867774477	5.77267954516091	5.36235205567562	5.49369116728131	5.28562008126714	5.41226429988815	5.58032466445788	5.44612445950373	-0.101244972759991	0.728401013954164	0.89196275508999
Merged-chr19-23142881-4	chr19	23142799	23142999	+	925.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010638, intron 1 of 1)	intron (NM_010638, intron 1 of 1)	1673.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	4.6244701486671	4.49215307546032	4.83498707823487	4.61567626338676	4.41828812899234	4.54913497716727	4.39951378953278	4.41635941572797	-0.446576398463543	0.216027034225766	0.52240905990201
Merged-chr14-45038200-4	chr14	45038079	45038279	+	982.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	50068.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	4.77728842084815	5.57061596220164	5.23181113731196	5.43251069434304	5.32782625834646	5.60995423409326	5.29763768312426	5.16279449843206	0.10551214193396	0.749163656314036	0.901219204917164
Merged-chr5-148559648-4	chr5	148559547	148559747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-6859.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	4.77543907497586	4.96982468981766	5.43394609034031	4.76358934380995	5.00485415006993	5.41310270577759	5.2138900758076	5.4300734960761	0.502805219525977	0.141309301703784	0.418205263231201
Merged-chr9-70943589-3	chr9	70943479	70943679	+	851.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324472, intron 1 of 9)	MTE2a|LTR|ERVL-MaLR	8642.0	NM_001324472	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	3.80010120113687	3.8422680506483	4.05993074632854	3.31371338258198	3.47475355337134	3.7120373205426	3.52174204960759	3.47328553402069	-0.707093303432004	0.18411475434865	0.481387652843055
Merged-chr6-37448101-4	chr6	37447989	37448189	+	852.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5941.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	3.7702425585188	4.46173676898525	4.13673346809488	3.92309374545911	4.02389237614203	4.43544298758356	3.97538915067962	3.93785990026687	0.0213103413482778	0.963272965531938	0.986884771915451
Merged-chr3-98084023-7	chr3	98083908	98084108	+	967.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 5 of 33)	intron (NM_010928, intron 5 of 33)	70470.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	5.04557800783363	4.90991906362938	5.77681772525894	5.96403878073417	4.53352827853864	4.72622617716067	5.02154253156607	5.04295865329316	-1.25117695955364	0.00169665842588715	0.0205664935449968
Merged-chr5-139483669-4	chr5	139483559	139483759	+	954.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159908, intron 1 of 6)	intron (NM_001159908, intron 1 of 6)	832.0	NM_133349	100494.0	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	5.1207742172156	5.54557003811072	5.0875931803421	5.56341174413326	5.1558923356089	5.11948360986846	4.91836838104091	5.15127311142615	-0.507193856402178	0.110509105731414	0.367070850118713
Merged-chr13-43365549-4	chr13	43365443	43365643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5173.0	NM_178848	68346.0	Mm.35325	NM_178848	ENSMUSG00000054021	Sirt5	0610012J09Rik|1500032M05Rik|AV001953	sirtuin 5	protein-coding	5.24104428009981	5.20369642784574	5.43453861869726	5.40127780859851	4.80103820284404	5.00206797797063	5.02510061148342	4.937964218002	-0.747581788204879	0.0142946668789381	0.101392844152805
Merged-chr12-102330965-1	chr12	102330865	102331065	+	866.5	f0_balb.idr	intron (NM_177620, intron 3 of 9)	MLT1I|LTR|ERVL-MaLR	47324.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	3.80723949724846	3.2714824519402	3.6626641582468	3.93776450773966	3.27010881658262	3.67303974348644	3.59575276898137	3.55388675224848	-0.5515779826175	0.30657744964668	0.619026702040607
Merged-chr16-27389906-4	chr16	27389792	27389992	+	869.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025615, intron 1 of 9)	intron (NM_001025615, intron 1 of 9)	936.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	3.99117043551573	4.48492587822922	4.27658680532918	3.73381350882039	4.06998002326102	4.36105345279162	4.25692226435634	4.13941884497331	0.160486152929379	0.72174416234831	0.888889479237274
Merged-chr18-82848174-3	chr18	82848088	82848288	+	604.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7709.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	2.9668025784151	2.8805897621037	2.74370215365103	3.02060546359514	3.2527757011453	3.49524330658182	3.41207387933963	3.32502117197195	1.75805281539192	0.00362881534006266	0.0370900986631706
Merged-chr16-44126647-4	chr16	44126543	44126743	+	981.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	12616.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	4.78404451324274	3.97736875631496	4.7848349816063	5.0224627026293	4.88790949081012	4.80336044317517	4.90099019069335	4.92177379789271	0.34842941532499	0.401079495247606	0.698839078520995
Merged-chr4-132983174-4	chr4	132983061	132983261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010208, intron 1 of 12)	intron (NM_010208, intron 1 of 12)	9066.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	7.49543686764494	7.82253457740698	7.10552586216287	7.03089316903101	7.58942265863428	7.77815422845759	7.10630108781025	7.07548690267936	0.0315343295218951	0.90335199229173	0.964259128403537
Merged-chr15-58875975-4	chr15	58875866	58876066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026642, exon 1 of 1)	3' UTR (NM_026642, exon 1 of 1)	3317.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	6.546754490864	6.79468502695249	6.79060696551692	6.7632062333273	6.77641645284905	6.6025620930244	6.59512536561057	6.68538696378681	-0.084312377380461	0.678338546643368	0.868034533256964
Merged-chr19-4099975-4	chr19	4099902	4100102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_075078)	promoter-TSS (NR_075078)	4.0	NR_075078	18739.0	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	5.97720620844648	5.73624565464351	5.56479476979492	5.94600714818241	6.26573163532189	6.1317144141748	6.01184899428785	6.35189597171083	0.582659150998289	0.0202769468314593	0.129238101158064
Merged-chr10-99279729-1	chr10	99279629	99279829	+	583.0	f0_balb.idr	Intergenic	Intergenic	16498.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	3.08246494399319	3.06414090455579	3.08289005676758	3.12190190932681	2.58902966962838	2.87358719514304	2.82766969595491	3.08117079405567	-1.07612772860322	0.0948616829078437	0.337018204526948
Merged-chr1-177248875-3	chr1	177248736	177248936	+	771.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011785)	promoter-TSS (NM_011785)	-69.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	3.3399025937324	3.63216212766799	3.66058857648306	3.42002452268597	3.70089105435416	3.39098317961757	3.06533889936533	3.45430278220643	-0.288329014522694	0.606732165095726	0.829601951310077
Merged-chr17-47011153-4	chr17	47011051	47011251	+	994.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177374)	promoter-TSS (NM_001177374)	-619.0	NM_001177374	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	5.27108977150852	5.53934272291753	4.89374447394218	4.92751330978048	5.33592475942577	4.94986691698293	5.41141425716519	5.20742609596016	0.117744507147874	0.725671391057287	0.890921883682774
Merged-chr7-90481036-3	chr7	90480890	90481090	+	907.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-4995.0	NM_026734	68472.0	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	3.61623712680288	3.58568259217038	3.05503136873772	3.52501585858296	2.54538099487521	2.71838013810867	2.68618145826387	2.91959676091606	-4.27704061135751	9.80058383101713e-06	0.000270176512977524
Merged-chr6-114282785-4	chr6	114282660	114282860	+	956.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178703, exon 1 of 16)	5' UTR (NM_178703, exon 1 of 16)	125.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	4.62921564198395	4.73310405707013	4.33173426231993	4.5578319730581	4.62541324534726	4.64145520821474	4.57005187391121	4.32914096579594	-0.0498427439599756	0.89149118353462	0.959385213525176
Merged-chr8-120441932-3	chr8	120441836	120442036	+	993.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46930.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	3.44381086554296	3.39034188618624	3.77794857342705	3.96445226618919	3.56577547635006	3.55979396419822	3.89931282281162	3.91460440372441	0.193416733329507	0.712663721094545	0.884973674176355
Merged-chr18-62174702-3	chr18	62174613	62174813	+	764.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5268.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	3.87236121559135	4.1228339762923	3.56335768381859	3.89555398555185	3.32655338674176	3.79430736595384	3.42970201003645	3.50203871996301	-1.14505632458158	0.0266338525920344	0.154933883103009
Merged-chr2-129596523-3	chr2	129596426	129596626	+	966.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	1064.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	5.28794478325389	5.12321786569203	5.50968078351267	4.33889521538054	5.19347409419595	5.80183839080464	5.23190217095338	5.31490370051178	0.508194679385961	0.195519099165934	0.49635687137214
Merged-chr3-94476535-3	chr3	94476438	94476638	+	762.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1757.0	NM_001289616	78784.0	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	4.05921968665778	4.16890842712472	3.82090337583377	4.07645505727902	3.83881991725664	3.82997346487451	3.6974765511133	3.70942037346184	-0.765597482853727	0.0873976132957289	0.322459895085463
Merged-chr6-5633203-4	chr6	5633104	5633304	+	788.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92435.0	NM_001191023	13426.0	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding	3.7438985662578	3.70362369974299	4.03782442872947	4.0842414693339	3.89501167729791	4.06920915749323	3.83396474706362	3.56679192184019	-0.166231920390989	0.724949563082532	0.890550799072391
Merged-chr1-131053402-4	chr1	131053286	131053486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008551)	TTS (NM_008551)	33541.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	6.27808893422622	6.31477741618368	6.22036242585874	6.55623898075837	6.2781073093613	6.54707417242717	6.40789533391852	6.36699294730745	0.04676659024902	0.836775012440373	0.938009805352904
Merged-chr7-110908813-1	chr7	110908713	110908913	+	592.0	f0_balb.idr	intron (NM_194464, intron 10 of 20)	HAL1b|LINE|L1	3828.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	3.41742609970741	3.03178573508292	3.24762573415311	3.36826834264022	3.46833004944814	3.47727061889837	3.40409914796947	3.24602515102201	0.440273280645212	0.412487820503161	0.707583519920819
Merged-chr5-45677861-4	chr5	45677762	45677962	+	836.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019438, intron 7 of 20)	MTD|LTR|ERVL-MaLR	7937.0	NM_019438	54392.0	Mm.32012	NM_019438	ENSMUSG00000015880	Ncapg	5730507H05Rik|Hcapg|MFT.M05.13	non-SMC condensin I complex, subunit G	protein-coding	4.15584711489199	4.14719944357814	4.33104851997627	4.52762355613488	3.92244706776153	4.28208195956503	3.88388262459858	4.24409142592571	-0.568014779631568	0.184402458943032	0.481798343290737
Merged-chr8-109705492-4	chr8	109705399	109705599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286393)	promoter-TSS (NM_001286393)	-47.0	NM_001286393	75871.0	Mm.180410	NM_029468	ENSMUSG00000031728	Zfp821	4930566A11Rik|Znf821	zinc finger protein 821	protein-coding	6.93414131662744	6.72572422757583	6.53621104631109	6.7598425396595	7.07402580473561	6.48799828702826	7.03175807548751	7.01603077801389	0.258351208380774	0.247447121758279	0.558576642129662
Merged-chr7-135598639-4	chr7	135598533	135598733	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316680, intron 1 of 20)	intron (NM_001316680, intron 1 of 20)	5152.0	NM_001316680	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	5.10478619727584	4.49481693029885	4.77389799164856	4.94467090056573	4.8086064531095	4.94728126311972	4.59150200365403	4.80809055446667	-0.117904884905281	0.738873403952754	0.897050385821673
Merged-chr18-67212968-3	chr18	67212895	67213095	+	914.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177137, intron 7 of 11)	intron (NM_177137, intron 7 of 11)	7636.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	3.11606499707077	3.27913890047739	3.05708238151981	3.5797717821661	2.88648167002217	2.89443198391325	2.85299750980922	2.9934715222022	-1.62423576636528	0.0105922343003387	0.0823083673868783
Merged-chr4-105149681-4	chr4	105149624	105149824	+	948.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58B|DNA|hAT-Charlie	-7623.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.51850357480731	3.4747991838281	4.25264679074439	4.36947227385798	4.046971621965	3.83478548625614	4.19229066844062	4.28915335990062	0.324108210209014	0.558179740866626	0.803013031815704
Merged-chr5-74975689-4	chr5	74975586	74975786	+	818.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26492.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	3.46871626034264	3.70112049729431	3.34730131983596	3.51215545748184	3.28005809794393	3.64296792525586	3.80579080177753	3.68119627514726	0.305598785438864	0.553276385245617	0.800098734796079
Merged-chr17-28232629-4	chr17	28232532	28232732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011145)	promoter-TSS (NM_011145)	-122.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	7.83850487321244	7.97596704735013	7.28332668955715	7.4642886795374	7.7479321966346	7.7871825464016	7.68844989829897	7.37599243636715	-0.00952596656208219	0.964901582265753	0.987587193973107
Merged-chr13-9884247-2	chr13	9884147	9884347	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 4 of 4)	L1_Mm|LINE|L1	-118926.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	2.46451930432121	2.39272453583808	2.31740238614279	2.20673301586391	2.62908308540201	2.63988950909314	2.6486315764493	2.77285217222864	1.89105783131032	0.00664017291210833	0.0585096394789501
Merged-chr1-36580767-4	chr1	36580673	36580873	+	817.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 11 of 14)	intron (NM_001126046, intron 11 of 14)	12559.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	3.79435298286887	3.3389572528978	4.02927204276281	3.5920027710048	3.84570093133656	4.01651229506149	3.828832460252	3.84303295345643	0.523659713120285	0.282507087244538	0.594646675034863
Merged-chr6-29609269-4	chr6	29609186	29609386	+	728.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361290, intron 1 of 23)	CpG	563.0	NM_177296	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	3.75076928141886	3.9015241459127	3.64128133332325	3.71936195402342	3.72147429228392	3.8704153315129	3.92920694705238	3.85042707026845	0.24731100945968	0.580424052638421	0.815718435955212
Merged-chr10-56339285-4	chr10	56339182	56339382	+	912.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38018.0	NM_010288	14609.0	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	4.62225907173972	4.06252303182258	4.66057150235783	4.6369829620135	4.6192010821058	4.50064051783124	4.67455555503937	4.54144277226828	0.145262896610703	0.70501310672602	0.881563627356675
Merged-chr17-34034271-4	chr17	34034118	34034318	+	922.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205214, intron 4 of 9)	intron (NM_001205214, intron 4 of 9)	1868.0	NM_001205215	20182.0	Mm.1243	NM_011306	ENSMUSG00000039656	Rxrb	AL023085|H-2RIIBP|Nr2b2|RCoR-1|Rub	retinoid X receptor beta	protein-coding	3.61735623518207	3.80731019767897	3.495178141121	3.39993782786451	3.80976604456454	4.14372005769826	3.81722805855679	4.05841888704404	1.12120937268536	0.0170150727887785	0.114678142792582
Merged-chr2-70092340-2	chr2	70092240	70092440	+	844.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177376, intron 2 of 34)	RLTR21|LTR|ERVK	53214.0	NM_177376	329421.0	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	3.00404677742476	2.89438078265269	3.11141613858674	3.19443551859858	2.65006500000361	2.6434090473739	2.68267901929636	2.75802989019125	-1.87217465657411	0.00574549146071983	0.0526397653086082
Merged-chr9-101552962-4	chr9	101552853	101553053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	210759.0	NR_110509	102633035.0	Mm.411422	NR_110509	ENSMUSG00000101941	Gm28979	-	predicted gene 28979	ncRNA	6.66322130503985	6.65994551659701	6.75709035509211	7.08753226119953	7.10386223657522	6.65354786159237	7.22820083743887	7.14524081469747	0.327044406903222	0.15197897059631	0.435846541018322
Merged-chr2-49744442-4	chr2	49744395	49744595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 20 of 25)	intron (NM_008449, intron 20 of 25)	-43191.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	7.10252881799068	6.93073684654153	7.49749336869607	7.59509756896521	7.54935083354132	7.41180137627406	7.66943933843568	7.55462024368943	0.30565097213192	0.156175167708735	0.442021137941209
Merged-chr17-14953657-4	chr17	14953554	14953754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024250, intron 7 of 11)	intron (NM_024250, intron 7 of 11)	7606.0	NM_001360983	72057.0	Mm.440085	NM_024250	ENSMUSG00000023883	Phf10	1810055P05Rik|AV024533	PHD finger protein 10	protein-coding	7.4758709600607	7.29386307531085	7.43953902108561	7.61949304403317	7.32910172253469	7.27982436228963	7.70529801324212	7.10940403888609	-0.123865144757423	0.542663116660297	0.793917205662524
Merged-chr9-31050433-4	chr9	31050335	31050535	+	918.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001115130, intron 1 of 5)	B4A|SINE|B4	19791.0	NM_172765	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	4.27722632386562	4.65711476873382	4.01154767718434	4.77026362877164	4.41947177512939	4.67110335399756	4.2108327097091	4.68498114966291	0.0638913346581314	0.882313768698223	0.955717753610026
Merged-chr3-32365717-4	chr3	32365550	32365750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009517)	promoter-TSS (NM_009517)	15.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	5.34640541925226	4.7831820055556	4.7621999198314	4.75974097495286	5.08821366750328	4.77383834493281	4.81516593801934	4.54712662727494	-0.197230586739533	0.593582307379457	0.822876522679178
Merged-chr19-34386617-3	chr19	34386489	34386689	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88546.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	3.45139766906855	3.47671075077047	3.56176209631726	3.89592742736128	3.40192154109959	3.50647495215035	3.54755333970942	3.39150294525595	-0.542319590570683	0.295293808439744	0.607360011623083
Merged-chr16-36588116-3	chr16	36587985	36588185	+	898.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-25951.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	3.63427777507415	3.64259640168648	3.74028927835975	3.88318919178519	3.79453590370162	3.50846723978216	3.44688087990837	4.00986318044281	-0.0682931554457067	0.890898838987836	0.959229919188304
Merged-chr19-12585476-4	chr19	12585379	12585579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015503)	TTS (NR_015503)	11087.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	6.99895502968513	6.62544451294929	6.79484635241219	6.66677042321768	6.55151333331786	7.03855670217062	6.56533375616012	6.77599909667962	-0.0453116285000349	0.839421766200082	0.938936149860228
Merged-chr19-12002374-4	chr19	12002298	12002498	+	954.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34342.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	4.83922927313737	4.91580617442152	5.00712355733538	4.8422130746909	4.62909332617383	4.5527707486466	4.85181531915817	4.72492760531153	-0.427603600885133	0.200439461094305	0.502485838102051
Merged-chr11-67588580-4	chr11	67588472	67588672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109657, intron 1 of 13)	MIR3|SINE|MIR	2072.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	5.73759753132278	5.92067502986246	5.49891614503733	5.90247060393738	5.7087025120405	5.64617601562597	5.52842380297069	5.58002625354864	-0.27751231402947	0.298440211186612	0.61056207726063
Merged-chr5-122509820-2	chr5	122509720	122509920	+	759.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7595.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	2.78424979737586	3.01433863184328	2.78459710762379	2.87138426233847	2.46931717168863	2.69049198486768	2.57939224128401	2.72052464558315	-1.31369933768412	0.0541453383152646	0.242986669713085
Merged-chr17-31118261-3	chr17	31118130	31118330	+	860.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009593)	TTS (NM_009593)	11381.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	3.39882437895232	3.07159894787624	3.5446106163524	3.22200330138088	3.2631259390784	3.01386895108133	3.0375994998478	3.34497129489978	-0.52236023387406	0.369092373579705	0.673441492374711
Merged-chr10-58341884-3	chr10	58341774	58341974	+	602.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026148, intron 1 of 9)	intron (NM_026148, intron 1 of 9)	-10089.0	NM_001359116	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	3.93787698797102	3.8175556564505	3.79413607545951	3.58221409296947	4.21735210301398	3.62764719918983	3.61792428737361	3.6860189113005	0.135483418723609	0.785970326062265	0.916748575809684
Merged-chr8-24419959-3	chr8	24419870	24420070	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18976.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	4.97084435221203	4.86751643124048	4.90230624613811	4.98624577451955	4.76418529727747	5.03948376600431	4.72914002988755	5.03399048535556	-0.088455991005077	0.784405632637183	0.916076100794651
Merged-chr5-125394369-4	chr5	125394252	125394452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-4335.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	6.85383117444424	6.73845311314273	6.43358277994409	6.45118277455525	7.2616884014043	7.3356350397455	7.09072467924101	7.07646009943802	0.802339895995677	0.000117232782498525	0.00231470519430306
Merged-chr14-104473237-3	chr14	104473092	104473292	+	751.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5193.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	3.4826412273812	3.45160615717394	3.73956595647187	3.0637872549071	3.30764806578171	3.60112560281206	3.62714818325561	3.68990936584003	0.376542292228531	0.492097564649406	0.763346782261791
Merged-chr7-107370613-3	chr7	107370510	107370710	+	724.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021889)	promoter-TSS (NM_021889)	-180.0	NM_021889	60510.0	Mm.302793	NM_021889	ENSMUSG00000062542	Syt9	-	synaptotagmin IX	protein-coding	2.79273063801236	3.02784245232111	3.1696081504894	3.09390369832555	2.42232962259836	2.45762505976088	2.50992505434596	2.51514145919654	-3.51304780217987	0.000103412643085831	0.00208758040902051
Merged-chr14-77832581-4	chr14	77832463	77832663	+	893.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025384, intron 5 of 5)	RMER6B|LTR|ERVK	-33595.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	4.50721757842104	4.4510780418177	4.4534878864442	3.99111754217293	6.06124881339724	5.94591909722501	5.85816074816663	5.63657068150628	2.9824573081504	7.00652109036753e-21	2.69576845779065e-18
Merged-chr19-46369365-4	chr19	46369268	46369468	+	895.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029186, intron 6 of 8)	intron (NM_029186, intron 6 of 8)	12488.0	NM_029186	75146.0	Mm.159290	NM_029186	ENSMUSG00000025227	Mfsd13a	4930449A08Rik|4930538D17Rik|Tmem180	major facilitator superfamily domain containing 13a	protein-coding	4.55364445406451	4.45668865888745	4.34771893257562	4.6633845976005	4.28645085413069	4.05315474865031	4.32849565901418	4.69511565232589	-0.365749842000948	0.359264907611554	0.665247576974058
Merged-chr6-134556398-3	chr6	134556281	134556481	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 1 of 22)	MER92A|LTR|ERV1	10532.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	4.20227980369018	3.81446251806602	4.06108208038483	3.06542254208267	6.71105481252788	6.2166706260772	6.76115736136391	6.82373695199837	6.17979803117779	1.23974832784471e-49	1.2606292318237e-45
Merged-chr7-45367304-7	chr7	45367240	45367440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029741)	promoter-TSS (NM_029741)	107.0	NR_027802	50994.0	Mm.389897	NM_016664	ENSMUSG00000091510	Mtag2	MAG	metastasis associated gene 2	ncRNA	6.64640911970747	6.80237379181048	7.12481300144873	6.40421776143226	6.61881557306593	6.97174541131242	6.74696634204362	6.71893902915308	0.0109255466852692	0.963518262646991	0.986968281921325
Merged-chr6-97531236-2	chr6	97531131	97531331	+	726.0	f0_balb.idr|f1_balb.idr	intron (NM_145148, intron 1 of 23)	(CA)n|Simple_repeat|Simple_repeat	-43411.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.24797256728592	3.32352092377384	3.18962235918687	3.37752087901925	3.08380318311252	3.17195934108726	3.39553547435486	3.24671303393185	-0.254077691447303	0.640582588496544	0.848234068144109
Merged-chr12-4190472-2	chr12	4190372	4190572	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 3 of 21)	intron (NM_001159537, intron 3 of 21)	43493.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	2.74545610084322	2.75584518397343	2.80508285580759	3.15465561400151	2.63354735412509	2.50117812692145	2.54276643615341	2.39988201857595	-1.90656293419782	0.012130994453675	0.0906342032348206
Merged-chr11-120369825-4	chr11	120369749	120369949	+	801.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027980, exon 10 of 10)	3' UTR (NM_027980, exon 10 of 10)	8315.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	3.658802457787	3.52040241063808	3.31204303341577	3.60913870501425	3.79069772175262	3.66958847876151	3.42608778200567	3.75473023220076	0.423751161077103	0.392940561891678	0.692205902019298
Merged-chr10-20770205-4	chr10	20770130	20770330	+	988.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45152.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	5.17031494168634	4.9072534274804	5.005089198555	5.24865726647769	5.41235498536945	4.86583224478861	5.14576076921924	5.13614988503619	0.128341774978149	0.691019991681738	0.874248804463384
Merged-chr17-63370099-4	chr17	63369998	63370198	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 5 of 8)	intron (NM_015794, intron 5 of 8)	-57125.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	5.12268588049942	5.5752523732183	5.43502738594585	5.36756088996908	5.50590902858949	5.19225615397828	5.48744084411187	5.15483696026469	-0.0582336552915876	0.845306075822919	0.941471757098182
Merged-chr10-62216916-4	chr10	62216813	62217013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	intron (NM_197996, intron 1 of 7)	14305.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	7.5775033842603	7.53438034269055	8.46574186961255	8.24557805511478	7.55610516323342	7.39345645137796	7.22570543293635	7.6003777301593	-0.744910655152369	0.00272853349797494	0.0296465098232878
Merged-chr2-29820482-6	chr2	29820375	29820575	+	887.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6914.0	NM_026615	68205.0	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	3.41751282060928	3.23830460679169	3.52304971710392	2.87400381543595	3.35749453201216	3.69213630685935	3.29106614544749	3.24099962728323	0.446510712342498	0.446138601014385	0.731917382663076
Merged-chr1-142467361-5	chr1	142467251	142467451	+	951.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-1173346.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	3.58105496673391	3.4874316098796	3.97896198377738	3.28308133456995	3.30005924976851	3.4074121765722	3.40277905041748	3.41391614854643	-0.736721711477795	0.177120977219578	0.472365013832599
Merged-chr2-35257206-3	chr2	35257138	35257338	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206368, intron 1 of 16)	intron (NM_001206368, intron 1 of 16)	879.0	NM_001206368	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	2.90972210584871	2.93984321869225	2.85253941721513	2.68868378366989	2.51693482270988	2.69756034191165	2.71979396967425	2.6613818632883	-0.999424394127037	0.132777717351186	0.405765750755573
Merged-chr16-33912165-4	chr16	33912084	33912284	+	928.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	54854.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	4.27459792468265	4.77265875883337	4.41421979486555	4.65537442516633	4.81419814891978	4.29817644465023	4.35058199356637	4.68883574412867	0.0328570920513681	0.93411578989238	0.976278214650169
Merged-chr3-81982730-4	chr3	81982624	81982824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-6996.0	NM_019911	56720.0	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	6.43699484457708	6.3421486527898	6.47181011545235	6.68536234086307	6.39103808660106	6.1954648940676	6.47136409100519	6.308088572619	-0.228105550567828	0.309082849103662	0.621474805546597
Merged-chr2-156258643-4	chr2	156258545	156258745	+	925.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 4 of 17)	intron (NM_172674, intron 4 of 17)	-53828.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	5.65745724721996	5.82905502140894	5.44646264264861	5.72491650224572	5.52912858114915	5.26282047103774	5.05789815796855	5.52629745071718	-0.535020469376373	0.0669634347219207	0.275989057001499
Merged-chr5-66165880-4	chr5	66165762	66165962	+	818.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040695)	TTS (NR_040695)	-13908.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	3.79136884853251	3.84670016547156	4.09955169482162	3.7187289864782	4.13188263994985	4.31440000185763	4.25002937219749	4.05057770891814	0.878155660595842	0.0376713903282213	0.194009977004013
Merged-chr10-40384055-4	chr10	40383955	40384155	+	787.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291816, intron 1 of 11)	intron (NM_001291816, intron 1 of 11)	34747.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	3.67367936669102	3.23050888271579	3.62239634961164	3.83401915557783	3.75780349596403	3.62763602833337	3.44098809663432	3.72177375417618	0.0848946328662967	0.871043836075312	0.951519041237659
Merged-chr2-180127871-3	chr2	180127764	180127964	+	802.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144500, intron 1 of 13)	intron (NM_144500, intron 1 of 13)	8498.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	3.29024079079997	3.25748152564551	3.17945353905197	3.58069920170664	2.8650162060747	3.10103006646946	3.04759227716451	2.99103430621598	-1.43546779093388	0.0169407114832927	0.114317681330043
Merged-chr5-125292096-4	chr5	125291995	125292195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 7 of 10)	intron (NM_001205083, intron 7 of 10)	48999.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	6.01870032894769	5.81121723564594	5.47846408375729	6.33779755369345	5.74973465361767	5.83601219011334	6.19962726002456	6.07684824225864	0.00835766914878624	0.977630638145134	0.991939645680407
Merged-chr17-28007343-4	chr17	28007234	28007434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 11 of 24)	intron (NM_181413, intron 11 of 24)	73250.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	5.71062657674699	5.67993530290874	6.13782723893482	6.37657181640762	5.59342367213481	5.33257507532511	5.73198443047759	5.39318976550181	-0.819918320308106	0.00678770628493456	0.0595442624667682
Merged-chr13-97146036-2	chr13	97145936	97146136	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271465, intron 4 of 20)	intron (NM_001271465, intron 4 of 20)	8099.0	NM_001271464	320806.0	Mm.219675	NM_177266	ENSMUSG00000021666	Gfm2	6530419G12Rik|A930009M04Rik|EF-G2mt|EFG2|MST027|RRF2mt	G elongation factor, mitochondrial 2	protein-coding	3.45391992942288	3.32809885775587	3.22535514958577	3.46186513085276	3.47535017393514	3.33538017964383	3.44064194619704	3.34309261155813	0.0914387247789087	0.858920873113004	0.946576014812915
Merged-chr1-128106559-2	chr1	128106459	128106659	+	842.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_181750, intron 1 of 26)	intron (NM_181750, intron 1 of 26)	3253.0	NM_181750	226412.0	Mm.221041	NM_181750	ENSMUSG00000056211	R3hdm1	R3hdm	R3H domain containing 1	protein-coding	2.73146596617103	2.72210371198244	2.8684381493421	2.91874377132098	2.80458704337469	3.10295652343231	3.24297324210516	2.99078401188986	0.943593939651756	0.129521940493018	0.400488366739901
Merged-chr13-76633906-3	chr13	76633805	76634005	+	881.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	248944.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	3.17974619330158	3.08521272560664	3.32162517748303	2.94338027769844	4.04792049206121	3.57257958430363	4.26225989140683	3.86687290035245	2.82353622041899	1.19733320684192e-07	5.06387286570417e-06
Merged-chr3-122888638-4	chr3	122888505	122888705	+	887.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046036, intron 5 of 5)	intron (NR_046036, intron 5 of 5)	-6467.0	NM_007980	14079.0	Mm.28398	NM_007980	ENSMUSG00000023057	Fabp2	Fabpi|I-FABP	fatty acid binding protein 2, intestinal	protein-coding	3.31470087114848	3.25729098262044	3.82158477754037	3.87487875680102	2.94528110812184	3.22882157721277	3.24056490919814	3.73284525550936	-0.943774417116885	0.136664528044273	0.411151599640715
Merged-chr9-111058068-4	chr9	111057904	111058104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302376)	promoter-TSS (NM_001302376)	-486.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	6.44874291044222	6.79810749481692	6.70591056790203	6.27718798835869	6.98788778753593	6.66174430361303	6.55075473289551	6.40930128348944	0.167981198180776	0.495229604193775	0.765570679090165
Merged-chr8-120332843-4	chr8	120332739	120332939	+	882.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104609.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	4.2368967886696	4.10135624777853	4.19329136933563	4.42001937829278	4.10077270005469	4.36389799515154	3.81814391510158	4.14493045923398	-0.342197511731222	0.418857444852248	0.712112541828539
Merged-chr12-78862111-4	chr12	78861997	78862197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026114)	promoter-TSS (NM_026114)	25.0	NM_026114	13665.0	Mm.196220	NM_026114	ENSMUSG00000021116	Eif2s1	0910001O23Rik|2410026C18Rik|35kDa|Eif2a|eIF2alpha	eukaryotic translation initiation factor 2, subunit 1 alpha	protein-coding	6.20021000775376	6.35282112770405	6.3308885100465	6.23020397087447	6.03873209533244	6.21115915355572	6.15006553902342	6.13698293906178	-0.22573651702734	0.312858859108162	0.624760990137467
Merged-chr2-34639443-4	chr2	34639347	34639547	+	766.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	115785.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	3.72871010060969	3.66033475951075	3.40912435409832	3.48915832703493	3.59144973319966	3.46102009114954	3.80280708754457	3.28085518267946	-0.0761135314013281	0.882307132566696	0.955717753610026
Merged-chr11-6655135-2	chr11	6655037	6655237	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028586, intron 3 of 5)	intron (NR_028586, intron 3 of 5)	-3396.0	NM_019511	56089.0	Mm.39884	NM_019511	ENSMUSG00000041046	Ramp3	AI850306	receptor (calcitonin) activity modifying protein 3	protein-coding	3.13351419247798	3.07489307315912	2.79950067341589	2.88326981332338	3.16955051272072	3.41516213483781	3.2860658145105	3.071823204612	1.04652223905198	0.069653674487758	0.28240367375052
Merged-chr8-106145509-4	chr8	106145402	106145602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-4852.0	NM_133792	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	5.67462835060509	5.80079247529499	5.62741056826909	4.85446997287568	5.35200277377224	5.72528797581132	5.26524635640424	5.15315721201644	-0.24091558625416	0.495943260685729	0.766025331518119
Merged-chr5-105520087-3	chr5	105519947	105520147	+	962.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 1 of 3)	intron (NM_133897, intron 1 of 3)	576.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	3.53373251901762	3.71098201822944	3.41640264280784	3.19914758685751	3.68085287385043	4.00121174345447	3.40400813401397	3.58735407870441	0.678988418769259	0.196664095721098	0.497807740730158
Merged-chr17-51178738-4	chr17	51178629	51178829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 1 of 21)	CpG	623.0	NM_028162	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	6.94917185741353	6.99925813479381	7.21489136209259	7.18573749166352	7.15263485807567	7.31339560246487	7.44946618269451	6.84818072970306	0.152845299009199	0.465345878969777	0.745811792142008
Merged-chr18-38227888-4	chr18	38227814	38228014	+	970.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3Cz|LINE|L1	-18152.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	4.89405831250619	4.51244269635617	4.99030847889932	4.94968934865128	4.75860646873966	4.55062951609364	4.7325423604613	4.26510749064199	-0.535364212382371	0.151620427560538	0.435362001118241
Merged-chr11-61854409-7	chr11	61854313	61854513	+	972.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013881, intron 1 of 26)	CpG	679.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	4.78202431509089	4.83177376199645	5.06178796445334	4.8390366357739	4.96910904435911	4.87880647477796	4.63906749634228	5.17741621433161	0.107478013954525	0.747618357534296	0.90064698436039
Merged-chr11-95333425-4	chr11	95333318	95333518	+	899.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3600.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	4.99625818768735	4.59056573008222	4.69466981724522	4.70860062173315	4.54474169820556	4.66482983016215	4.59500559106143	4.52997849937677	-0.36426687709501	0.298768910402305	0.611023798227954
Merged-chr16-12471746-4	chr16	12471633	12471833	+	927.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-339657.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	5.01674715424217	5.03514013405265	4.08629736435367	5.14961745298337	4.68013470083808	4.8084968993163	4.34384139959061	4.45638020557383	-0.637210777164386	0.141984577519995	0.419279797680707
Merged-chr4-126301421-4	chr4	126301313	126301513	+	763.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199473, intron 2 of 3)	CpG	14619.0	NM_199473	329941.0	Mm.296327	NM_199473	ENSMUSG00000056174	Col8a2	AI429819	collagen, type VIII, alpha 2	protein-coding	4.29623916368574	4.21914608052291	3.96966547315412	3.60412981568039	4.31904879290949	4.29365089558198	4.31706341079759	4.01940006819191	0.531161295643879	0.240501679361303	0.551073267231004
Merged-chr15-89089069-4	chr15	89088973	89089173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027905)	promoter-TSS (NM_027905)	35.0	NM_027905	223776.0	Mm.44763	NM_027905	ENSMUSG00000035757	Selenoo	1300018J18Rik|Selo	selenoprotein O	protein-coding	6.33063487754612	6.03121818783688	5.96610502051673	6.19009110576816	6.37419610372361	6.52374773457396	6.13060500545006	6.11673983907362	0.241384735415668	0.315275622151688	0.627105605858262
Merged-chr8-94811952-4	chr8	94811835	94812035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011332, exon 3 of 3)	3' UTR (NM_011332, exon 3 of 3)	1482.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	5.7816442107805	6.02470734758329	6.28910224029037	6.49679487087052	6.3289384405002	6.18233096210812	6.25688387585338	6.15081942166121	0.0594553365082171	0.819867593626675	0.931038192981049
Merged-chr2-170144037-4	chr2	170143923	170144123	+	676.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1348.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	3.53566302023167	3.68465423114717	3.69744713945072	3.54602527705813	3.70498041035464	3.53017683053683	3.68223893423339	3.79216250083797	0.217809289570617	0.642070268872143	0.848992640896773
Merged-chr19-16419888-2	chr19	16419788	16419988	+	819.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-15779.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	2.82863941416079	2.4908886591315	2.46942416060606	2.53715516263227	2.97249605339258	2.93949687871385	3.04632490167739	3.05812229718422	1.98116066997725	0.00253982657399284	0.0280969903141265
Merged-chr17-43573890-4	chr17	43573822	43574022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	5471.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	7.22756609680367	7.23391281262981	7.84037865039756	7.37309902382026	7.51719751267258	7.48259235702027	7.20383928582099	7.26803032724491	-0.0839763099070252	0.694604388264373	0.876027601124593
Merged-chr2-132701616-3	chr2	132701502	132701702	+	781.150024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028637, intron 2 of 2)	intron (NM_028637, intron 2 of 2)	11004.0	NM_028637	73747.0	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	3.27103489014605	3.42914456226246	3.01768827157384	3.25361200872377	3.40810604191894	3.26076386776334	3.31499880960549	3.32607673817427	0.283419366337228	0.599036543514075	0.826146116839364
Merged-chr6-122875018-2	chr6	122874918	122875118	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026267, intron 1 of 7)	CpG	461.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	3.59385837363339	3.74120667634853	3.53560418222923	3.82436306711929	3.94715426134606	3.71117670531922	3.46243870029541	4.02597675970369	0.356957324891639	0.469115748916729	0.748095998770725
Merged-chr7-43667763-4	chr7	43667680	43667880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS_Mm|LTR|ERV1	-4251.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	5.47978327343409	5.82995562847327	4.90484449982337	3.80411601010923	6.25387989392302	5.60294042963568	5.33855965496441	5.39193848589227	0.770708032586962	0.309420709352096	0.621662432848957
Merged-chr6-42264918-4	chr6	42264813	42265013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007610)	promoter-TSS (NM_007610)	-72.0	NM_007610	12366.0	Mm.3921	NM_007610	ENSMUSG00000029863	Casp2	CASP-2|ICH-1|NEDD-2|Nedd2	caspase 2	protein-coding	8.25587650444353	8.17783774344343	7.94928218508019	8.09962777369503	8.04880786678419	8.01483118504619	8.16166188220149	7.90059999163621	-0.115096219791449	0.483294659675446	0.757735425472777
Merged-chr10-21991524-4	chr10	21991434	21991634	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161849)	promoter-TSS (NM_001161849)	-689.0	NM_001161849	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	4.72032081343285	5.01169040871765	5.2563618810909	4.85058461866412	4.6500087007771	4.97728002721064	4.9251210665683	5.07764137556822	-0.1194431145491	0.727068410747317	0.89133085313418
Merged-chr17-65884364-2	chr17	65884229	65884429	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009067, intron 1 of 9)	CpG	594.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	4.01293028470686	3.85302446774942	4.26842839375838	3.90229168977714	3.92980814943467	3.93092811991794	3.68158184728295	4.14479932934987	-0.216056880660807	0.631400617238819	0.843388211517721
Merged-chr10-118038550-3	chr10	118038455	118038655	+	953.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103232.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	3.29564414639455	2.9227947045533	3.0931914117622	3.56397933476859	2.57860859147501	2.58103460274594	2.55275364012763	2.63662936518682	-3.84276579572176	3.1725517756831e-05	0.000761102335157894
Merged-chr8-109917433-2	chr8	109917333	109917533	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122594, intron 9 of 18)	intron (NM_001122594, intron 9 of 18)	44772.0	NM_212447	73608.0	Mm.86833	NM_028584	ENSMUSG00000001672	Marveld3	1810006A16Rik|AI642133|Marvd3|Mrvldc3	MARVEL (membrane-associating) domain containing 3	protein-coding	3.35684455539177	2.79654405609037	3.13299190766699	3.17969409254967	3.30965131414513	3.36303413798642	3.1218589910555	3.19116914932912	0.44753452700123	0.446010537906226	0.731774752267646
Merged-chr15-88142187-3	chr15	88142087	88142287	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-172687.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	5.07368096659809	4.74077984811974	5.15286720536055	5.59971471004303	3.21663416966902	3.66059328896817	3.51293247226168	3.60263745495535	-6.53942552575058	3.10859059765045e-11	2.57886212296226e-09
Merged-chr11-115076814-4	chr11	115076717	115076917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-14614.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	5.67836065616122	5.56525102308251	6.15165774103423	5.95284787394832	5.63076151803906	4.92146162446877	5.31159061526741	5.65013715201143	-0.737115527379545	0.0214486779091706	0.134085319242654
Merged-chr18-35599185-4	chr18	35599071	35599271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357471, intron 1 of 3)	CpG	554.0	NM_001357472	67869.0	Mm.126534	NM_026420	ENSMUSG00000037058	Paip2	2310050K10Rik|AU045972	polyadenylate-binding protein-interacting protein 2	protein-coding	5.73151909488677	5.97756515739741	5.4516995392443	5.6955396168308	6.02325971015504	5.77661637785203	5.97288573091555	5.72846620052808	0.257879309096036	0.331203360866093	0.642422181260145
Merged-chr6-125331174-4	chr6	125331070	125331270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011324, exon 2 of 12)	exon (NM_011324, exon 2 of 12)	9830.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	7.39838008653427	6.98239476890829	6.90834203958863	6.79023688046724	7.17421754450366	7.63161173145425	7.46236774841463	7.1327654911396	0.450251647570768	0.0461627344897775	0.220613487192687
Merged-chr8-108694009-4	chr8	108693915	108694115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20629.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	6.80505387738096	6.75259464646661	6.85921682676051	6.88469755695879	6.17204280285854	6.34815081510011	6.77161146405554	6.65834533412975	-0.470997173116206	0.0387347296492292	0.197588700747886
Merged-chr5-41281213-3	chr5	41281103	41281303	+	774.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	426488.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	3.35543769174335	3.0583804965187	2.99491872109219	3.1194074991397	3.60804428508268	3.81656082444205	4.1245999528782	3.83107023831074	2.38140074738099	1.49123687338352e-05	0.000393858068313787
Merged-chr18-62176815-11	chr18	62176610	62176810	+	904.0242310000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3271.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	3.41458461508454	3.89654227488037	3.09897697034911	3.22951027927786	3.34565541376172	3.53104362965092	3.40160249448685	3.2957450829847	-0.174791152105988	0.761595138432695	0.906564246038326
Merged-chr12-51355501-4	chr12	51355400	51355600	+	774.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015099, intron 4 of 14)	MTD|LTR|ERVL-MaLR	7270.0	NM_001015099	217558.0	Mm.253264	NM_001015099	ENSMUSG00000035293	G2e3	6030408C04Rik|9030416F18|AW046379|D930034K21Rik|mKIAA1333	G2/M-phase specific E3 ubiquitin ligase	protein-coding	4.21974203711375	3.66496514159917	3.90747892027043	4.20014720154441	4.15075535762165	3.61193497946826	3.7317081617322	4.13602479065703	-0.232090805266646	0.638456437678341	0.847153284197798
Merged-chr11-62280783-4	chr11	62280669	62280869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029704)	promoter-TSS (NM_029704)	626.0	NM_027198	69747.0	Mm.141150	NM_027198	ENSMUSG00000014243	Zswim7	2410012H22Rik	zinc finger SWIM-type containing 7	protein-coding	5.71777383350725	5.72407223884088	5.30592799442823	5.24341149285607	5.69371049667881	5.71689670315641	5.4316640308507	5.42599190041741	0.125280383270047	0.671753010634315	0.864905117611895
Merged-chr9-56097972-7	chr9	56097870	56098070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	7994.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	4.55475964534922	4.85881961277415	4.76128006777636	4.46629511384243	4.96346859381931	5.0761894173466	4.7759115150269	4.83195340018255	0.538004013338488	0.115049701878123	0.37538953609823
Merged-chr12-83688149-4	chr12	83688058	83688258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008943)	promoter-TSS (NM_008943)	6.0	NM_001362271	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	7.17350323006909	7.30929873053247	6.53551997184859	7.1034456207792	7.13086717977545	7.31761625192316	7.29498850339776	7.04084391110226	0.18030108742747	0.421531449817575	0.714001052191097
Merged-chr3-93556189-4	chr3	93556061	93556261	+	769.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009112, intron 1 of 2)	intron (NM_009112, intron 1 of 2)	1044.0	NM_009112	20194.0	Mm.1	NM_009112	ENSMUSG00000041959	S100a10	42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11	S100 calcium binding protein A10 (calpactin)	protein-coding	3.71089007078988	3.81187535465435	4.01495629057186	4.0123200004508	4.19505462574025	3.88624193904034	3.85618936927133	3.7094324004585	0.0965262094270326	0.8338872231075	0.936577740653464
Merged-chr2-113391178-4	chr2	113391083	113391283	+	939.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-49881.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	4.60835053296145	4.523016609188	4.47764891301613	4.73587386996316	4.94837613990589	4.97325825060058	4.77916856068071	4.76263238047594	0.558027847861574	0.101937941291257	0.350472913257517
Merged-chr16-87432609-4	chr16	87432498	87432698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081068)	promoter-TSS (NM_001081068)	8.0	NM_001081068	78913.0	Mm.249005	NM_001081068	ENSMUSG00000052299	Ltn1	4930528H02Rik|AV266914|C87237|Listerin|Rnf160|Zfp294	listerin E3 ubiquitin protein ligase 1	protein-coding	8.65455626205975	8.67862794924934	8.49513009736298	8.87196419950175	8.87347513429814	8.56136244843699	8.7862159667889	8.52442347864525	0.0136435534661962	0.935514587014759	0.976592986567772
Merged-chr15-102316405-4	chr15	102316310	102316510	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356312, intron 18 of 30)	intron (NM_001356312, intron 18 of 30)	-9706.0	NM_027044	56612.0	Mm.158264	NM_020031	ENSMUSG00000001289	Pfdn5	1190001O17Rik|1700010A06Rik|D15Ertd697e|Eig1|MM-1	prefoldin 5	protein-coding	4.88069895136864	4.84758098044526	4.91689644461749	4.76163487048184	4.90814158332623	4.82369953740023	4.49025396849936	5.35027134376165	0.167364431184142	0.640763914224821	0.848348920252381
Merged-chr2-129413787-4	chr2	129413708	129413908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42669.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	6.25025086693538	6.84080040931054	6.47736790408974	6.59346273670033	5.89369053942306	5.74576935280598	6.31050949319781	5.7946430202863	-0.920183639307727	0.000456730624649399	0.00717335152954978
Merged-chr17-31658851-4	chr17	31658753	31658953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357907)	promoter-TSS (NM_001357907)	-89.0	NM_001357907	108121.0	Mm.379289	NM_024187	ENSMUSG00000061613	U2af1	2010107D16Rik	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1	protein-coding	8.10845577165916	8.073820923478	7.98440423266123	7.88243832237495	8.12682377945775	8.37238383315118	8.07748255263523	7.98598147481723	0.175594652038135	0.299137881114679	0.611462157252936
Merged-chr16-17554167-4	chr16	17554085	17554285	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145435, intron 4 of 7)	intron (NM_001145435, intron 4 of 7)	7062.0	NM_029053	74685.0	Mm.38634	NM_029053	ENSMUSG00000022759	Lrrc74b	4930451C15Rik|mCG12354|mCP17390	leucine rich repeat containing 74B	protein-coding	5.62286831133517	5.91193209617227	5.67274098431927	5.69289136996956	5.37199174558057	5.25155824707248	5.04645507273959	5.27893691103182	-0.839576801591264	0.00303022683383922	0.0322308003296237
Merged-chr16-94241348-4	chr16	94241247	94241447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	ORR1D2|LTR|ERVL-MaLR	48944.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	7.23732088144275	7.53836214154706	7.30382236495134	7.49035681415973	7.48386329156225	7.48096979697829	7.49819842686501	7.0667875804934	-0.0108472041242608	0.955692388034233	0.984292813605202
Merged-chr18-9493448-4	chr18	9493357	9493557	+	865.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43303.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	4.65332227315194	4.27299758249399	4.4601457610342	4.96542221039286	4.44264451129802	4.30763283335614	4.2137165450591	4.41475680830458	-0.640194486003286	0.114949161466903	0.375181876561476
Merged-chr19-16435646-4	chr19	16435530	16435730	+	851.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008137)	promoter-TSS (NM_008137)	-37.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	3.85263268798826	4.230844002006	3.9542411853319	3.92193015341511	4.03951759805821	3.60998294198395	3.8885845745626	4.08971378618062	-0.194548071214909	0.669754471267594	0.863615758960093
Merged-chr7-79997306-4	chr7	79997202	79997402	+	807.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27512.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	4.17164794621821	3.87679001432339	3.79123050309632	3.76228451693876	3.91342308725931	4.11963825702449	3.66219494836137	4.21002677558304	0.240283054092918	0.601114920501074	0.827071740947179
Merged-chr18-53261442-4	chr18	53261329	53261529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	15767.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	5.24896839680359	5.06529693911823	5.30907938074086	5.47144750396481	5.34248392291469	5.12026094659153	5.02929037416941	5.08499592935496	-0.248084115974262	0.420807771963407	0.713566714326837
Merged-chr16-35756065-3	chr16	35755969	35756169	+	934.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	intron (NM_153550, intron 1 of 8)	13287.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	3.60563414827441	3.81423374488411	3.54964639731835	3.73220480355827	3.45758455638275	3.88151129654464	3.53640443321613	3.75986899311254	-0.0683173790700349	0.888354761679789	0.958165314224322
Merged-chr5-143548681-4	chr5	143548585	143548785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026050)	promoter-TSS (NM_026050)	-21.0	NM_133703	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	7.38393479755417	7.2678908672355	7.27342686028607	6.96597397457445	7.56081744022385	7.55219465436582	7.103044055319	7.0856627687821	0.173742036737344	0.419700797828538	0.712781243418825
Merged-chr1-154103775-4	chr1	154103672	154103872	+	906.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-97415.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	4.54141204471104	5.20858237357396	4.58145720004848	4.45098467172581	4.48381848779744	4.35720870252212	4.15826024991596	3.94459149099256	-1.07690900053285	0.0148479371633939	0.10408324988706
Merged-chr5-76048277-4	chr5	76048146	76048346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69818.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	6.16156523923592	6.14755365723993	6.06227540283585	6.40822420264162	5.91339674652667	5.88079527573626	5.96737169663922	5.85444389938755	-0.488322401130201	0.0427261706607403	0.210104820772217
Merged-chr14-21268433-4	chr14	21268309	21268509	+	978.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 6 of 10)	RMER19B|LTR|ERVK	192257.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	4.98857830933304	4.97155770628437	5.2698986569949	5.61826609461729	5.02212523017809	4.51252456478748	4.56295306935502	5.14928197264431	-0.780945532324325	0.0400628723691045	0.201928564818049
Merged-chr9-41160692-2	chr9	41160592	41160792	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2630.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	4.93032529089371	4.95666764337193	5.00210730385133	5.0634549496249	4.85978134715532	5.24106094146829	5.13858612161388	5.09830363564925	0.165732685324824	0.596043792309307	0.824362209128226
Merged-chr18-74913909-3	chr18	74913810	74914010	+	772.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	47353.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	3.5281850908468	3.73808694583555	3.35219836765416	3.6876478000399	3.48170516855465	3.64404402769075	3.61922743950845	3.41200556838	-0.173448392917625	0.729095450458108	0.892424767302202
Merged-chr18-84858317-3	chr18	84858206	84858406	+	897.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348159, intron 1 of 5)	intron (NM_001348159, intron 1 of 5)	6968.0	NM_001348159	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	3.17882602065772	3.2331934261521	3.23217781547263	3.2695339551925	2.57522143550283	2.83996358212824	2.86744110684941	2.94138634503534	-2.00407788118434	0.00281844549418914	0.0304375863800468
Merged-chr17-85090600-4	chr17	85090494	85090694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163624)	promoter-TSS (NM_001163624)	-106.0	NM_028576	73582.0	Mm.260753	NM_028576	ENSMUSG00000071037	Camkmt	1700106N22Rik|AI480743|AV099781|CLNMT|CaM KMT	calmodulin-lysine N-methyltransferase	protein-coding	7.86313803969636	7.9524306394608	7.62397318160763	7.87863454435696	8.21322476357792	8.23719677064506	8.26049271272478	7.93946038983517	0.425738508600158	0.013094820885767	0.095504885825234
Merged-chr15-38516600-2	chr15	38516500	38516700	+	774.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301688, intron 1 of 11)	intron (NM_001301688, intron 1 of 11)	2666.0	NM_001301688	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	2.93852978212495	2.77546513181309	2.76552233699107	2.71322364286154	2.49116964263982	2.67024253275619	2.4854658792801	2.88209007971812	-0.790088286448389	0.248646007325881	0.559862525479213
Merged-chr13-64373885-4	chr13	64373764	64373964	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3344.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	6.02533814848269	5.4767385064998	5.59565393818641	6.08058823459963	5.45189524131004	5.87410813162974	5.67039222211358	5.06593806786448	-0.475121053439383	0.139196395946806	0.414849904413086
Merged-chr12-55466470-4	chr12	55466373	55466573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26174.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	6.46774179195271	6.52928121261453	6.27875856987315	6.2928955100124	6.28713760807702	6.31732065258891	5.8330431592233	6.09412778628769	-0.364369851276496	0.128821722813103	0.399334169233259
Merged-chr14-20697167-4	chr14	20697061	20697261	+	929.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028428, intron 2 of 2)	intron (NM_028428, intron 2 of 2)	2193.0	NM_028428	73068.0	Mm.277552	NM_028428	ENSMUSG00000039357	Fut11	3110009G03Rik|AI317183	fucosyltransferase 11	protein-coding	4.69375247559492	4.64685313806191	4.40686970635441	4.88636095359831	4.6312123327961	4.43998489131865	4.51754710792939	4.57613522789599	-0.303123260246704	0.406545216851546	0.702991527987415
Merged-chr12-74804278-2	chr12	74804176	74804376	+	948.5	f0_balb.idr|f1_balb.idr	Intergenic	GSAT_MM|Satellite|Satellite	373056.0	NM_172805	238271.0	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding	4.08069015556871	3.50220155172635	3.98478881384368	5.52379687560509	3.36141299260775	3.33597172228224	3.42898636105161	3.440179675404	-3.15161889910731	0.000777306273881892	0.010983335784188
Merged-chr5-123228237-4	chr5	123228132	123228332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026000)	promoter-TSS (NM_026000)	42.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	5.93603277017874	6.34376188688136	5.35435975602248	5.38016178550761	6.35989985941333	6.40783492834366	5.39544958124798	5.954908902249	0.426151317582021	0.240457482784679	0.551011627298006
Merged-chr6-51756009-4	chr6	51755932	51756132	+	853.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	210739.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	4.34225526120633	4.32954188865055	4.30115774268581	3.99384097521012	3.98616716326476	4.38593226368915	3.83401246626825	4.45762237541573	-0.13405234413323	0.760508127989054	0.906130030835837
Merged-chr11-21370804-4	chr11	21370728	21370928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139297)	promoter-TSS (NM_139297)	-199.0	NM_139297	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	5.69787797864854	6.05990014981347	6.24437447152964	6.16190273422186	5.82023691031829	6.18641064455133	5.64279675924473	5.96398041261098	-0.238335279771337	0.373416338878582	0.677052849217637
Merged-chr12-112865005-4	chr12	112864886	112865086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4070.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	7.56338006485436	7.73239555131624	7.16657607031164	7.08774329607725	7.3654741224371	7.41235195160207	7.49291673592239	6.84360780182477	-0.144705462867205	0.543241283473	0.794367638237739
Merged-chr10-86074313-3	chr10	86074209	86074409	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013722, intron 8 of 13)	intron (NM_013722, intron 8 of 13)	-21545.0	NR_038024	78170.0	Mm.444790	NR_038024	ENSMUSG00000112493	4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	3.71564638157834	3.83128553106856	3.65408702991566	3.85405207415703	4.59720696686766	3.89769364508127	4.38543639343227	4.08230114844383	1.32274741127323	0.00388507881198172	0.0391749574667866
Merged-chr4-121010596-2	chr4	121010496	121010696	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	6651.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	2.97343574652159	3.12047348217617	3.23263529378375	2.96679176244503	3.47776111048544	3.22112739513757	3.38361523121477	3.49525787260258	1.24546584359768	0.0213751207648582	0.133825289904287
Merged-chr15-99904575-4	chr15	99904470	99904670	+	882.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27088.0	NM_028180	72277.0	Mm.272766	NM_028180	ENSMUSG00000045350	1700030F18Rik	FAM186A	RIKEN cDNA 1700030F18 gene	protein-coding	4.50394765894743	4.64450386372401	4.4622114721726	4.34685012708621	4.43967976904862	4.7934610082587	4.56431152829739	4.58266766605187	0.245126533697457	0.499582191804242	0.768387448003553
Merged-chr17-5729964-5	chr17	5729842	5730042	+	933.320007	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 7 of 8)	intron (NM_146073, intron 7 of 8)	-68715.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	3.48724237213698	3.31408962654382	3.82460652451678	3.3577852942729	3.31746292625113	3.65872890806268	3.35994637843479	3.69031085765956	0.0278865847201422	0.958314086454962	0.985142778641354
Merged-chr9-66980645-4	chr9	66980541	66980741	+	752.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5157.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	3.82402139368081	4.14240351744238	3.71463104690678	3.7897402462161	4.05828313380501	3.71255742762705	3.86021092186648	4.14608837077782	0.230116839768122	0.614724747409444	0.834093272768538
Merged-chr8-108817401-3	chr8	108817302	108817502	+	766.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 3 of 9)	Lx7|LINE|L1	102758.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	3.96149149484305	3.96202334567401	3.87600277739511	3.84315085984837	3.24423437748263	3.44528447992746	3.56160427483491	3.10936497773362	-1.9123895759745	0.000437751182966709	0.0069210776215876
Merged-chr17-17624617-4	chr17	17624509	17624709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172827)	promoter-TSS (NM_172827)	-120.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	8.44453317248182	8.51609853960432	8.16039803117429	8.49495935047244	8.55949560862027	8.56083403954245	8.54631199863682	8.50988229910689	0.16139404896422	0.302446258932089	0.614887385808093
Merged-chr10-37232081-4	chr10	37231981	37232181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93155.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	8.01765424328856	8.19782682903841	8.49045176052582	8.26843369746179	8.09351456072352	8.35398644326573	8.45588078579396	8.44110801448073	0.108226508158896	0.544241612110084	0.795184841840149
Merged-chr6-86493596-4	chr6	86493484	86493684	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-5357.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	5.14670430585894	5.23238120521565	5.08045471071775	5.08564677164006	5.42450480412709	5.03416153474583	5.33109995712867	5.20774525822857	0.247047823363192	0.40654375212703	0.702991527987415
Merged-chr7-19421464-4	chr7	19421352	19421552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073014)	promoter-TSS (NR_073014)	-35.0	NR_073015	100503495.0	Mm.410762	NR_073014	ENSMUSG00000040705	A930016O22Rik	-	RIKEN cDNA A930016O22 gene	ncRNA	6.62123838648297	6.88648206361967	6.38067293393511	6.76538296918245	6.70014220126058	6.75102057352729	6.89256203407461	6.39498771795875	0.0169404958746225	0.940786066408808	0.978654793543509
Merged-chr18-62059243-4	chr18	62059156	62059356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106181.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	6.2986459223968	6.67220337759265	6.11156634270016	5.76959330568083	5.94134084526631	5.94222929301454	6.0181149526953	5.81145606179021	-0.490262116033723	0.087261627481449	0.322207572884892
Merged-chr1-170709681-4	chr1	170709601	170709801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081304, exon 16 of 16)	3' UTR (NM_001081304, exon 16 of 16)	65169.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	7.86921158749716	7.97020389963981	8.11143275942836	8.13953154189347	7.4636017498693	7.72124949781556	8.07886447270958	7.80474231537748	-0.323892816138123	0.0923439502592984	0.332386853881497
Merged-chr10-121613773-4	chr10	121613691	121613891	+	914.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 6 of 24)	intron (NM_001359618, intron 6 of 24)	12541.0	NM_001081056	73192.0	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	4.33083344648164	4.20139927722198	4.74114673859704	5.01406435969329	4.50897458205481	4.25090407336014	4.64684982292008	4.73794214017015	-0.176820790981084	0.677426864274703	0.867677369398422
Merged-chr12-35051182-4	chr12	35051095	35051295	+	787.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	4006.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	3.46737244693385	3.75565558430235	3.12595028944155	3.75921802666246	3.77293852999456	3.85925203235304	3.81733895217286	3.52512022126235	0.572284451609238	0.298569256132049	0.610720762176651
Merged-chr14-121931161-4	chr14	121931058	121931258	+	880.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 4 of 8)	MLT1F1|LTR|ERVL-MaLR	-15384.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	4.13585414040812	4.16428112147791	3.93441202080439	3.99732015938881	4.18447700853046	4.30822614066554	4.2501993749972	4.26691483278935	0.490363960011774	0.215600876755138	0.52183945887357
Merged-chr5-66102985-4	chr5	66102879	66103079	+	975.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	B4|SINE|B4	-4800.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.60245409014906	5.29387407344054	5.40265852199966	5.6281998991551	4.81869433549016	4.96664910024437	5.23237155614987	4.86609512341718	-0.970722057402349	0.00180473485021918	0.0215752808034517
Merged-chr13-119462757-4	chr13	119462675	119462875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113550)	promoter-TSS (NM_001113550)	16.0	NM_001360805	67392.0	Mm.390641	NM_026127	ENSMUSG00000062822	4833420G17Rik	2210017J06Rik|5730533D17Rik|AW107518|C85193	RIKEN cDNA 4833420G17 gene	protein-coding	7.40028180874561	7.33349334531514	7.28830069615078	7.76173530862042	7.37056006463669	7.1904176206912	7.42234758985736	7.50923220231338	-0.127245658170043	0.526021311894551	0.783478854115848
Merged-chr10-78244728-4	chr10	78244629	78244829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081055)	promoter-TSS (NM_001081055)	-87.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	7.31487800776967	7.64116073569122	7.25041886850713	7.52381186385453	7.5559807329639	7.62486669189194	7.72268367745973	7.16411642980704	0.113872069234804	0.575053895871321	0.81272502373833
Merged-chr14-76467137-4	chr14	76467028	76467228	+	901.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207652, intron 1 of 2)	intron (NM_207652, intron 1 of 2)	-21308.0	NM_001177751	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	4.88952821111015	4.76857989895096	4.73884312017984	5.20297827755133	4.77267195704224	4.60509436675907	5.17856965271245	4.95646812048173	-0.0744887434932376	0.835026018469249	0.937170920808922
Merged-chr3-144628876-4	chr3	144628752	144628952	+	903.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58425.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	4.63532856910644	4.79975019703493	5.47020276051265	5.11603948906541	4.43554868217132	4.32144509071817	4.65563480702983	4.7914024884346	-1.00443662297829	0.0102828661734593	0.0805817605813787
Merged-chr1-170162005-4	chr1	170161907	170162107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 2 of 10)	intron (NM_133806, intron 2 of 10)	12957.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	5.53385687328913	5.09406128169913	5.45451725007888	5.79524670871053	5.18616097030342	5.32057455690411	5.34203646959956	5.45069186450696	-0.330368589173985	0.287082211523756	0.598769333151773
Merged-chr8-83442572-4	chr8	83442483	83442683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019708)	promoter-TSS (NM_019708)	79.0	NM_001285992	56367.0	Mm.246911	NM_019708	ENSMUSG00000063253	Scoc	0610011C06Rik|2810002J11Rik|AA415030|SCOCO	short coiled-coil protein	protein-coding	7.64458788401382	7.5406948708241	7.31309557936198	7.50424961968739	7.35120294519935	7.44736575180301	7.51606773553878	7.06332206677052	-0.202101911394323	0.290243825577399	0.602406731765695
Merged-chr17-23993702-4	chr17	23993598	23993798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133731, exon 6 of 6)	3' UTR (NM_133731, exon 6 of 6)	4402.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	6.49666378701642	6.74541767519523	6.03887811337431	6.33334793794521	6.15069671636469	6.40760418342496	6.17925765714084	6.41042943641201	-0.211754015530675	0.39649427758397	0.69519327480908
Merged-chr14-47395848-3	chr14	47395744	47395944	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144553, exon 14 of 19)	exon (NM_144553, exon 14 of 19)	21984.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	5.08958048396961	5.44302440084645	5.7299229285121	5.73691620313084	4.0333790467125	3.85737542529484	3.92967727276522	4.13973319783854	-3.57220474359343	7.00796147147069e-15	1.11343680709333e-12
Merged-chr9-55392524-3	chr9	55392430	55392630	+	782.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172923, intron 3 of 10)	intron (NM_172923, intron 3 of 10)	65617.0	NM_001357568	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	3.73834408397583	3.6837361817485	3.45759195859594	3.71152501410129	3.81727390907601	3.63436703237982	3.86499123691037	3.73672506115761	0.336329258889423	0.469319006422899	0.748251025868274
Merged-chr11-68467744-1	chr11	68467644	68467844	+	899.0	f0_balb.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	-35275.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	3.952572983266	3.85238083282629	3.38435001429148	3.1884906407376	3.57331391108465	3.68467005707482	3.43492577068321	3.81885749105467	0.017207676750852	0.975197286669342	0.991193161400585
Merged-chr1-170703145-3	chr1	170703062	170703262	+	774.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58630.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	3.80574946711295	3.4366338292239	3.66948991501575	3.56531454137633	3.30944213958784	3.45005402521776	3.44472584403139	3.61768869119337	-0.558442155488598	0.271249017166524	0.583005426328374
Merged-chr3-60080782-4	chr3	60080667	60080867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1102.0	NM_032400	84112.0	Mm.125110	NM_032400	ENSMUSG00000027762	Sucnr1	Gpr91	succinate receptor 1	protein-coding	6.87930706880495	6.81640192773417	6.79953481678728	6.82382231953987	6.79062911387283	7.08213989292739	6.41501334212658	6.53221104046298	-0.140600725247804	0.529120087179097	0.785448147764775
Merged-chr10-75586452-4	chr10	75586409	75586609	+	985.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008116)	TTS (NM_008116)	-2872.0	NM_011820	23887.0	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	3.91356768521227	3.9505645319627	3.76530610151063	3.71535126731554	3.88905952253912	3.65218431790842	3.89723814192375	3.76320139792138	-0.0689416702393408	0.878690987923295	0.954700601865188
Merged-chr7-24902993-4	chr7	24902890	24903090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008488)	promoter-TSS (NM_008488)	4.0	NM_001130151	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	5.76206565550795	5.66883288845342	5.99233029901304	6.07466048911968	5.96500182053376	5.91364118204877	5.6567485570732	5.9236023040506	-0.0379756073620152	0.884126783991157	0.956390337098447
Merged-chr19-10184361-3	chr19	10184212	10184412	+	891.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146094, intron 1 of 11)	intron (NM_146094, intron 1 of 11)	1424.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	2.85645829355306	3.08730238719408	3.18224136329376	3.00422896322324	2.57619471682511	2.6882283520817	2.5769811720351	2.65590588841038	-2.16138599470133	0.00234409038297501	0.0264295912196703
Merged-chr9-32485506-3	chr9	32485396	32485596	+	880.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	MLT1G1|LTR|ERVL-MaLR	55956.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	3.99823685291686	3.9321306346806	4.38998497648434	4.3013345757571	3.89637186347409	4.07046013762623	4.44068627786699	3.71504650265489	-0.29923513785078	0.521264812628155	0.781266094587594
Merged-chr4-119738834-4	chr4	119738729	119738929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75849.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	5.50747319344774	5.56203333304931	4.980967759237	5.41363342270611	5.7883155551346	5.38232035526721	5.53325282419435	5.4772710659148	0.303637008290657	0.309624993809296	0.621833440934041
Merged-chr8-125558831-4	chr8	125558730	125558930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	11033.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	5.31902391785642	5.74896325840012	5.58814790306796	5.941980550701	5.64161637290426	5.56196086341842	5.53309020802356	5.75943720250121	-0.10617592202833	0.71003945807916	0.883981924800458
Merged-chr4-16213479-4	chr4	16213375	16213575	+	976.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 3 of 6)	Lx8b|LINE|L1	49365.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	5.20892962809379	4.35381218849927	5.15397012391987	4.8995484506847	4.89435819858682	4.76468522239578	4.84252627164852	4.62687829555743	-0.301380874120577	0.424915105950508	0.716567599871949
Merged-chr15-99670692-3	chr15	99670578	99670778	+	623.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009597, exon 1 of 12)	5' UTR (NM_009597, exon 1 of 12)	301.0	NM_009597	11419.0	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding	3.12230755819437	2.95621023732272	2.77953989832107	2.59792340659264	3.22070687972706	3.46344793344488	3.22510411870471	3.3433327495452	1.84740248449228	0.00263191856381392	0.0288610894243893
Merged-chr16-55776986-3	chr16	55776882	55777082	+	896.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	45156.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	3.88789236833172	4.20255581249737	3.55180099009167	3.4735329156841	3.93420795138388	4.06059057021815	3.65966753996314	4.02646054923753	0.337524783279074	0.502478357395207	0.769717422982556
Merged-chr11-67579296-4	chr11	67579182	67579382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	-7218.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	6.9261689417798	7.07472230726444	6.9142952828764	6.83153021740874	6.92919546588141	6.92268742725114	6.81212503063743	6.97345894048197	-0.0322498557844565	0.866967841037096	0.95017995041061
Merged-chr11-83578534-4	chr11	83578443	83578643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011338)	promoter-TSS (NM_011338)	93.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	6.57296734115562	6.34756898112743	6.92189665019092	6.64925875649213	6.1164401043946	6.45707789813948	5.99074348501315	6.38716531294074	-0.57957756401953	0.0179065377792043	0.118785596699533
Merged-chr2-119674993-4	chr2	119674866	119675066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030112)	promoter-TSS (NM_030112)	-102.0	NM_030112	76246.0	Mm.33437	NM_030112	ENSMUSG00000027304	Rtf1	2900005O08Rik|6530416A09Rik|AI853581|AU043144|AW553985|Gtl7|cbp82	RTF1, Paf1/RNA polymerase II complex component	protein-coding	6.81710633055854	7.18143791712036	7.2577125302519	6.96686026017661	7.08649660667455	6.9374547875459	6.79772422746476	6.33561117241225	-0.332359904201403	0.162032731566481	0.45110625807392
Merged-chr8-3628171-2	chr8	3628071	3628271	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2626.0	NM_001129803	18545.0	Mm.440882	NM_008790	ENSMUSG00000004630	Pcp2	L7|Pcp-2	Purkinje cell protein 2 (L7)	protein-coding	3.34372164690659	3.0653637610999	3.39921666846159	3.07993434744224	3.28057453271629	3.40074453519384	3.53547846085724	3.34233537074676	0.620478433251664	0.247772638471694	0.558928540740629
Merged-chr13-119325729-4	chr13	119325613	119325813	+	893.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83298.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	3.64585070580959	3.40994441498408	4.2712792061351	3.74102540871574	3.47381278945005	3.52793605535834	3.52045110197318	3.58933874103257	-0.853612052830536	0.108381871090204	0.3633608027097
Merged-chr1-183221476-4	chr1	183221378	183221578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026866)	promoter-TSS (NM_026866)	51.0	NM_026866	68897.0	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	5.68769825051109	5.51344728717757	5.5555029920222	5.67754364527356	5.45115359367126	5.78591528563937	5.9499775455512	5.89364667955653	0.264110207485523	0.331879566239304	0.642938752527011
Merged-chr5-114707775-4	chr5	114707662	114707862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029992)	promoter-TSS (NM_029992)	-17.0	NM_029992	77832.0	Mm.239698	NM_029992	ENSMUSG00000002486	Tchp	A930031F18Rik|AV279199	trichoplein, keratin filament binding	protein-coding	5.73473237404244	5.90010478929113	5.63127569128025	5.61438241901923	6.05152323685085	5.88560056174249	5.68163889775952	5.91817305574838	0.292648835218829	0.255188094037947	0.566793564000595
Merged-chr11-3170688-2	chr11	3170587	3170787	+	1000.0	f0_balb.idr|f1_balb.idr	exon (NM_030207, exon 7 of 33)	exon (NM_030207, exon 7 of 33)	22776.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.78027454423696	6.00832888183892	5.85543995504965	5.72699043160007	3.40539566434868	3.93079920033471	3.77164663055583	3.78458586661338	-7.78373513229846	4.12735963901445e-14	5.77173539774871e-12
Merged-chr19-55825675-3	chr19	55825600	55825800	+	930.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-69621.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.81959120183482	3.22516472277496	3.5093084625722	3.58749413591418	2.81660785443163	3.34405665455202	3.08802237127364	3.09655526745197	-1.77497003636287	0.00456242589012996	0.0443706670902528
Merged-chr1-189689198-3	chr1	189689081	189689281	+	712.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1095.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	3.80092200996611	3.55952459496149	3.93707566667454	3.96788111354386	3.26386667493188	3.87348563976094	3.33900844837292	3.47617472444387	-1.03558353352745	0.0519565132123195	0.237293080137291
Merged-chr11-106613980-4	chr11	106613872	106614072	+	980.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1042.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	4.90286757822536	4.79439869991793	4.5314879790374	4.38028993250423	4.64453125203135	4.61932598500059	4.7087182639647	4.72806474511291	0.0472296310592857	0.89652655140441	0.961155518163813
Merged-chr16-10996701-4	chr16	10996588	10996788	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-3567.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	4.8543161844574	5.32180897187725	5.3155587849381	4.80305743314908	4.71341223430093	4.65336433557741	5.00323757982691	4.46758368895498	-0.732966611463534	0.0465769819822137	0.221878128798822
Merged-chr12-87387454-4	chr12	87387347	87387547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011479, intron 1 of 11)	intron (NM_011479, intron 1 of 11)	908.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	5.53582408759767	5.30264542882434	5.84117827590004	5.4050357530061	5.22621174108492	5.51221705215194	5.68068821705579	5.16720291593321	-0.20913681431909	0.495268549833604	0.765570679090165
Merged-chr4-15266607-1	chr4	15266507	15266707	+	610.0	f0_balb.idr	exon (NM_181401, exon 1 of 3)	exon (NM_181401, exon 1 of 3)	787.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	4.05660588219395	3.76698597124994	4.05723221499737	3.83529210093445	3.72530530975387	3.82707460095478	3.80277601558367	4.0971585459862	-0.172717473282582	0.701656317358717	0.879777251502187
Merged-chr19-55688780-4	chr19	55688683	55688883	+	923.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	13421.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	4.49837791653783	4.15204531991489	4.18672463069095	4.11579850415355	4.77636005289116	4.26241245396728	4.51663694112523	4.64519669240821	0.783031360394556	0.0444260065575751	0.214909851362805
Merged-chr14-76959069-2	chr14	76958958	76959158	+	823.916626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	77559.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	3.93724946981775	4.0667041517252	4.15092301507497	4.31316998185367	3.1626903509809	3.6205414050722	3.55103736050494	3.4335460294162	-2.248176268064	2.46857587957061e-05	0.000612446017887614
Merged-chr16-20098151-4	chr16	20098062	20098262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029436, intron 1 of 7)	CpG	608.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	8.34074252422154	8.21174024222048	8.46111048262681	8.58593995756346	8.26622086921189	8.2545534180089	8.39195091907788	8.16214199051544	-0.17947465752926	0.276254504376573	0.588302970120437
Merged-chr11-83649532-4	chr11	83649430	83649630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011337)	promoter-TSS (NM_011337)	-152.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	7.49752661799975	8.00077828610459	7.68735394301333	7.78590300116847	7.65019290589754	7.864733308523	7.75345848964173	7.77830291826793	-0.000351653904784058	0.998461326386758	0.999317736028615
Merged-chr2-113654238-3	chr2	113654146	113654346	+	957.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 13 of 16)	intron (NM_001285459, intron 13 of 16)	-30844.0	NM_001287818	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	4.1866558868916	4.16868057395812	4.76554932616121	4.67891700066328	3.87365295497274	3.94325812672603	3.80501767719923	3.87642979682841	-1.5941435213259	0.000421323737958786	0.00670903855574238
Merged-chr14-118137691-4	chr14	118137576	118137776	+	914.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021434, intron 1 of 8)	intron (NM_021434, intron 1 of 8)	549.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	4.33747154826775	4.20337940343727	4.98403362629202	4.63127423161023	4.40934287572027	4.08909467399829	4.67949485200118	4.55012331779404	-0.276125523789786	0.515628680873143	0.777638858942518
Merged-chr3-89411977-4	chr3	89411881	89412081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362375)	promoter-TSS (NM_001362375)	-100.0	NR_155545	319945.0	Mm.258142	NM_177041	ENSMUSG00000042642	Flad1	A930017E24Rik|Pp591	flavin adenine dinucleotide synthetase 1	protein-coding	8.19720929840433	8.30221777811705	7.62558748899673	7.84090425352967	8.10858712625747	8.3287874460983	8.05066265893813	7.87719588865198	0.106015203798091	0.608469043655711	0.830675049522223
Merged-chr12-103443720-4	chr12	103443559	103443759	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281830)	promoter-TSS (NM_001281830)	21.0	NM_029803	76933.0	Mm.271275	NM_029803	ENSMUSG00000079017	Ifi27l2a	2310061N23Rik|Ifi27|Isg12|Isg12(b1)	interferon, alpha-inducible protein 27 like 2A	protein-coding	5.40878175405334	5.20676531640719	5.21504518424723	5.49310862557474	4.94219917244251	4.88185429319239	5.12771319453733	4.82817629634782	-0.760248763738128	0.0143889892643712	0.101859161297731
Merged-chr13-37606415-2	chr13	37606315	37606515	+	941.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-219623.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.34142262084322	3.05993704805762	3.34188220771322	3.21293760682885	3.03197601043938	3.66991960220091	3.21138393657278	3.54893188123672	0.51089355945924	0.372290718778285	0.676110200916599
Merged-chr2-157407786-4	chr2	157407675	157407875	+	927.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16518.0	NM_009271	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	4.42960085027936	5.37765408349648	4.04186980319568	4.05490421061234	4.35561321293157	4.17169537323182	4.45023803664981	3.86004399744385	-0.854516071402726	0.108395408871977	0.363371959124873
Merged-chr2-35214952-4	chr2	35214843	35215043	+	924.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13823.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	4.57020919050118	4.8602213687877	4.38477740336301	4.3799246157436	4.82607160741481	5.14713263532036	4.9524232908216	4.76848645097802	0.773460904201543	0.0300614284993075	0.167455190104258
Merged-chr5-53437436-4	chr5	53437318	53437518	+	970.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118361.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	4.57898737014408	4.58723443878661	4.61942442351151	4.55180375680859	4.5538378215527	4.6272280226526	4.67306071436943	4.61642565595568	0.0743316191058401	0.828456895133826	0.934169961374777
Merged-chr19-40663921-4	chr19	40663802	40664002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	4132.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	6.35519412638604	6.51741965969943	6.24744371122767	5.9803148003007	6.3173326296985	6.1274771909939	6.30633687369565	5.96904572347964	-0.12735947902661	0.612093400347856	0.832680684364583
Merged-chr2-112266391-4	chr2	112266301	112266501	+	996.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133649)	promoter-TSS (NM_133649)	87.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	4.99745169324967	5.38055539671389	5.10058990388918	4.99545222856383	5.28041600964937	5.02511071040804	5.00902971904562	4.99493039555264	-0.0579373971232511	0.855091214349391	0.945424485789793
Merged-chr14-9660088-4	chr14	9659984	9660184	+	849.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 8 of 9)	L1_Mus3|LINE|L1	-224011.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	3.53684809411356	4.08268760116387	4.22741416899846	3.80006922763925	4.10755462509208	3.91164714529854	4.28662124824693	4.22465945433612	0.547692575945187	0.236218376605542	0.546221422532839
Merged-chr6-89628210-4	chr6	89628049	89628249	+	876.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15839.0	NM_001178060	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	3.71022473123923	3.86191254627038	3.76229983443257	3.72634819921735	3.83885411193777	3.82879361756647	3.52997664694739	3.65505528433525	-0.123404708960804	0.789796088467084	0.918606748276064
Merged-chr14-72710006-4	chr14	72709906	72710106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207636)	promoter-TSS (NM_207636)	-3.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	6.37749740261173	5.90023541063706	6.11209471485177	6.0488583187413	6.5298708069339	6.3701857788047	6.5058514960536	6.08636545691926	0.419663684568022	0.0848975205628998	0.31700943266553
Merged-chr11-106122158-4	chr11	106122055	106122255	+	831.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 5 of 15)	(TTTTG)n|Simple_repeat|Simple_repeat	37253.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	4.22115172503892	3.96600393660368	4.22180767281601	3.94699109101456	4.15719334679311	4.25668484810982	4.32616112894944	4.08110971336658	0.318741468483612	0.433711796217148	0.723254141528262
Merged-chr1-51934727-4	chr1	51934617	51934817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18739.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	7.8989175167561	7.90411133508659	8.14784588830587	8.0497993182772	7.90843342920298	7.73141748258627	7.81079892053864	7.72541835432334	-0.26564346632269	0.109659344830583	0.365647920939134
Merged-chr1-53743189-3	chr1	53743096	53743296	+	872.5833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36412.0	NM_001252070	627872.0	Mm.184692	NM_001252070	ENSMUSG00000096141	Dnah7a	Dnahc7|Dnahc7a|Gm992	dynein, axonemal, heavy chain 7A	protein-coding	3.14322801626222	2.9139414796485	2.92375142782004	2.62466735504847	3.72107838106405	3.6747020722331	3.7619027421483	3.5495382921914	3.18251256444928	8.6854686053324e-08	3.76048035194011e-06
Merged-chr14-100224386-4	chr14	100224285	100224485	+	978.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74589.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	5.147730777654	5.69114317504713	5.27952075336825	5.77173655045226	5.14462737276692	5.42330582445994	5.19014216681261	5.03752310792629	-0.566142146880091	0.0765517897322996	0.298969488574738
Merged-chr14-61083853-3	chr14	61083762	61083962	+	910.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37007.0	NM_013869	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	3.10555903901993	3.28558369452244	3.69735757928896	3.23590101360906	3.59144706178337	3.82133043697961	4.2975754805151	4.10379276938732	1.93481693819055	0.000415579225045246	0.00663686642573381
Merged-chr19-4000757-2	chr19	4000657	4000857	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025529, exon 1 of 4)	exon (NM_025529, exon 1 of 4)	177.0	NM_025529	66387.0	Mm.259222	NM_025529	ENSMUSG00000110949	Nudt8	2310039H17Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 8	protein-coding	5.20610457707318	5.3310722541408	5.26639658732316	5.01058220114819	5.00423291588932	4.9565775938038	5.08735458850305	5.10881036327181	-0.298416000788078	0.331441543643001	0.642595786244724
Merged-chr5-143059488-3	chr5	143059385	143059585	+	804.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	53535.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	3.56437205686794	3.38517533723441	3.71514147276784	3.48822990923419	3.46466478118302	3.50911887511037	3.74464294647541	3.3929830349881	-0.0167474336074691	0.973286294697168	0.990485651958264
Merged-chr13-73490132-4	chr13	73490035	73490235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 3 of 13)	MTD|LTR|ERVL-MaLR	22752.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	6.7154201155136	6.50836358257186	6.91043731716966	7.33131145630951	6.46296894658807	6.32050738599628	6.84950780807331	7.13872543062419	-0.257649446216722	0.359045164530208	0.664979073847202
Merged-chr12-102302425-4	chr12	102302288	102302488	+	989.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	18747.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	4.75450141025909	5.05334736149559	5.07289597561754	4.90769775955753	4.9792028739523	4.84959744791987	4.98449287236654	4.75218766136407	-0.102305662803283	0.751771675613002	0.902294431953731
Merged-chr19-24556256-4	chr19	24556211	24556411	+	777.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008846)	promoter-TSS (NM_008846)	-439.0	NM_008846	18719.0	Mm.217214	NM_008846	ENSMUSG00000024867	Pip5k1b	PI4P5K-I[b]|PIP5K1-beta|PIP5KIbeta|Pipk5b|STM7	phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	protein-coding	3.48974308999282	3.56999474475244	3.60487799808783	3.85259294715549	3.58069563462582	3.72137323430225	3.7910791199222	3.70812107659963	0.141040350753794	0.770718291359076	0.910265273875382
Merged-chr10-84405380-3	chr10	84405307	84405507	+	684.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	35064.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	3.2646050336544	3.4452492271827	3.26504328142983	3.31833288406331	3.20833937701543	2.83212253765712	3.07756488569716	3.20693141763237	-0.895044429404688	0.128329799521662	0.398585626397538
Merged-chr2-60210537-4	chr2	60210433	60210633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020575, intron 1 of 9)	intron (NM_020575, intron 1 of 9)	597.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	6.39952566903233	6.55815571856875	6.45290679725685	6.30767007272834	6.64966164710084	6.52258116597844	6.19775596061241	6.56228861963903	0.109003936519875	0.627498162167121	0.841164852244315
Merged-chr7-45125197-2	chr7	45125097	45125297	+	782.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013725)	promoter-TSS (NM_013725)	-808.0	NM_013725	27207.0	Mm.196538	NM_013725	ENSMUSG00000003429	Rps11	-	ribosomal protein S11	protein-coding	3.26640304450636	3.74632443180444	3.38546411781844	2.87769777099212	3.46461556310108	3.17940269557222	3.42682026090016	3.54321073537382	0.183522534938159	0.761213805768678	0.906512173824769
Merged-chr15-100406273-3	chr15	100406137	100406337	+	933.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008732, intron 6 of 16)	intron (NM_008732, intron 6 of 16)	16818.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	3.8459512400615	4.01979156851429	3.89281454709638	3.94376745958025	3.52257964769993	3.44719533008562	3.68172808522978	3.39914522901521	-1.29235787974188	0.00794177652386375	0.066874211663563
Merged-chr17-45759042-4	chr17	45758953	45759153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	24547.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	5.15002079268523	4.9750722543263	5.32942465358496	5.42713981025011	5.02663493259232	4.78549617751266	5.32992043905405	5.04776913324469	-0.336986724134163	0.300917215733775	0.612811469979239
Merged-chr15-81926255-4	chr15	81926104	81926304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030229)	promoter-TSS (NM_030229)	9.0	NM_030229	78929.0	Mm.215115	NM_030229	ENSMUSG00000022476	Polr3h	5031409G22Rik|RPC8	polymerase (RNA) III (DNA directed) polypeptide H	protein-coding	7.59559926049773	8.08672898634081	7.58767843926319	7.4647588551199	8.17690429410592	8.19838443506897	7.95603171950432	8.00889355583456	0.500280062936444	0.0116765686293967	0.0881270786207004
Merged-chr16-45158322-4	chr16	45158212	45158412	+	978.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026402)	promoter-TSS (NM_026402)	361.0	NM_001356453	74102.0	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	5.21754492099904	4.92309159045206	5.18836420174324	4.96216250259653	5.07045406736407	5.16573252905553	5.19253716950796	4.95179422989369	0.0572338071469919	0.853014825845571	0.944678751070911
Merged-chr14-21747961-4	chr14	21747850	21748050	+	896.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007268, intron 1 of 7)	intron (NM_001007268, intron 1 of 7)	672.0	NM_001007268	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	4.81599117332595	4.43116184397873	4.78137339642793	5.06509863516182	4.39668055471434	4.72079667167816	4.48121476352623	4.8135443325596	-0.425401644291053	0.261671033445078	0.573611813883764
Merged-chr10-37290224-4	chr10	37290120	37290320	+	944.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-151294.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	5.03865221574899	4.37685582567318	5.00900491006446	5.42757644804754	4.67955948382605	4.56578777599078	4.46021554592822	4.32991993017749	-1.06110970577571	0.0100008441882982	0.0789190785453299
Merged-chr19-46987857-2	chr19	46987757	46987957	+	802.75	f0_c57.idr|f1_c57bl6.idr	intron (NM_001164363, intron 1 of 17)	intron (NM_001164363, intron 1 of 17)	-18290.0	NM_001164365	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	2.83599064450007	2.83856526387505	2.83624944782994	2.60879743533985	3.88441004502942	3.63561318229426	3.974382878059	3.75154132787959	4.39164084808687	7.0264204504567e-11	5.51415194314286e-09
Merged-chr4-43818993-3	chr4	43818904	43819104	+	888.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	2429.0	NM_019474	29846.0	Mm.377121	NM_019474	ENSMUSG00000110970	Olfr156	MOR262-6|OR37B|Olfr37b|mOR37b	olfactory receptor 156	protein-coding	3.58857018305384	3.45106930557897	3.53664911034438	4.15095715553039	3.16476496512483	3.28109351839274	3.41207670084234	3.36358326057887	-1.45297036706914	0.0107322540338126	0.0831784745070503
Merged-chr6-116735516-4	chr6	116735417	116735617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44B|DNA|TcMar-Tigger	-18759.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	4.81524850384478	4.87527517231846	5.05144751555779	4.64936986705768	5.21528523459809	4.95255122922543	4.50728174742045	4.47767501014338	-0.0152661380258093	0.968112878562096	0.988669946242722
Merged-chr11-103419821-4	chr11	103419735	103419935	+	918.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7171.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	4.23359532109845	4.40588366071281	4.57349844772196	4.22063780478984	4.2443152705812	4.36217923072776	4.30856371380075	4.77552540978729	0.181455035326688	0.648366731212663	0.852153840888272
Merged-chr5-88595684-4	chr5	88595521	88595721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 2 of 13)	intron (NM_001359208, intron 2 of 13)	12108.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	7.7840461666159	7.9540002823416	7.96660846790497	7.62146526142107	7.87347360964063	7.89052502302157	7.79340566355039	7.70782309577834	-0.0151504790912913	0.930902657083614	0.97518506813215
Merged-chr1-171713582-4	chr1	171713439	171713639	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31547.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	5.82893279423157	5.17803887414727	5.53655940577483	5.42194021742042	5.30289248964401	5.10861537972389	5.16118030882185	5.21608583803203	-0.536334623638318	0.0808392518790036	0.308445838086068
Merged-chr2-58567289-4	chr2	58567186	58567386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110205)	promoter-TSS (NM_001110205)	-48.0	NM_001289660	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	6.28325141432732	6.305704629452	6.2254454732153	6.54092363298919	6.34222926130126	6.23204276501362	6.88297770406681	6.2798666473576	0.157447684972146	0.531941593971778	0.787748963171131
Merged-chr5-135478294-4	chr5	135478280	135478480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	B3|SINE|B2	66742.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	4.79103818025358	4.33132531160512	4.71990414591552	5.08027728185296	4.55431395890773	4.65208376509766	4.26582086231181	4.75319638405843	-0.440117561393375	0.266382412780361	0.578085840707737
Merged-chr4-132513619-4	chr4	132513537	132513737	+	987.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3181.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	5.42567088860782	5.14913231480138	4.84235770093892	5.46154497473285	5.37668432683114	5.02138173714284	4.93663440900333	5.13191362481747	-0.21671195539406	0.517051012868538	0.778639488109204
Merged-chr6-119481526-2	chr6	119481426	119481626	+	787.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133940, exon 1 of 1)	3' UTR (NM_133940, exon 1 of 1)	1858.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	2.39785214214508	2.13830694751294	2.18498228016136	2.26597733629047	2.3247375048283	2.50270285498414	2.45276399838228	2.52174878555691	1.16365599943707	0.111984651817523	0.369830442709576
Merged-chr6-114293573-4	chr6	114293472	114293672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178703, intron 1 of 15)	intron (NM_178703, intron 1 of 15)	10937.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	7.02555564350123	7.53117670966346	7.23354596276643	6.71161271744571	7.4347304969862	7.12700579982862	7.02804818527464	6.62971262078583	-0.0838696056094089	0.748570883942611	0.901016488594137
Merged-chr14-70949699-4	chr14	70949591	70949791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	59584.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	5.82381926138243	5.69215193775884	5.91384681161866	6.34910045272459	5.2233386780132	5.3622329332725	5.79504066511379	5.64816468242119	-0.770486100495678	0.0116631009126799	0.0880627834797542
Merged-chr19-6067166-4	chr19	6067062	6067262	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081041)	TTS (NM_001081041)	688.0	NM_028454	73166.0	Mm.489613	NM_028454	ENSMUSG00000024799	Tm7sf2	3110041O18Rik|ANG1|C14SR|Dhcr14	transmembrane 7 superfamily member 2	protein-coding	4.85286214859386	4.82447607482571	4.23485643743149	4.0075145334427	4.59643433685571	4.25504722280578	4.79666803629442	4.97460155267521	0.335317621008893	0.451919103204796	0.736343134874995
Merged-chr10-81649041-4	chr10	81648934	81649134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142963)	promoter-TSS (NM_001142963)	-35.0	NM_001142963	100233208.0	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	-	predicted gene 10778	protein-coding	7.0742439362816	7.18726178730404	6.90887293145166	6.66958516153233	7.21341519966625	7.37752372847598	7.39169709446015	6.89020961101011	0.367697607647753	0.0956030348806712	0.338519969145921
Merged-chr7-4524436-4	chr7	4524333	4524533	+	837.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033548, intron 9 of 11)	B3A|SINE|B2	-1905.0	NM_009406	21954.0	Mm.27674	NM_009406	ENSMUSG00000035458	Tnni3	Tn1|cTnI	troponin I, cardiac 3	protein-coding	3.98101490409477	4.29707483941264	3.92732189571936	3.71179252413224	4.34997278558723	4.21006671878563	4.11402464069094	4.59916472871898	0.873391612887696	0.0449261987142654	0.216623892310168
Merged-chr16-4913858-4	chr16	4913737	4913937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 5 of 17)	B3|SINE|B2	-25274.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	6.55799287798293	6.37281301469885	5.89172350787628	6.36979052666089	6.36140880738165	6.5891603811114	6.31104745958727	6.28353236386785	0.096635286375095	0.691328653930637	0.874444572967993
Merged-chr5-62756018-4	chr5	62755908	62756108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	10169.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	5.97113280841285	6.24587388080799	5.7382295540546	5.69846705836256	6.05118187102121	5.91455124904603	5.78353087951169	5.57005048168346	-0.122377348766478	0.661120316813814	0.859233242450522
Merged-chr13-97219653-3	chr13	97219551	97219751	+	621.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-21294.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	3.81867184494801	3.23745224301387	3.46434914735957	3.38371011196992	3.64200749574298	3.52020204967298	3.80173899270789	3.51952499678265	0.454193401470956	0.377868634860131	0.680558922477594
Merged-chr19-10947417-4	chr19	10947271	10947471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023731, intron 1 of 3)	intron (NM_023731, intron 1 of 3)	1895.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	7.23709432963031	7.33697523965312	7.50407699542108	7.1709739318089	7.03371782481266	7.13203707967508	6.79451367587012	6.65207704705211	-0.538769466499577	0.00935043252730131	0.0752549114496585
Merged-chr13-23684817-4	chr13	23684708	23684908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178189)	promoter-TSS (NM_178189)	609.0	NM_023422	68024.0	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	5.35185594907355	5.34237995551554	5.35277076518913	5.34296345681529	5.82376816397004	5.67282975444917	5.52478708526529	5.54886245988595	0.534303519751749	0.0471093422889585	0.223352819209071
Merged-chr10-14189295-4	chr10	14189194	14189394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	222915.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	6.74624670714695	6.93307253086257	7.04198101989238	6.75492771292813	6.90146498342975	6.66989132791637	6.65418975738956	6.19042777274467	-0.328985771508393	0.160209541180312	0.448239942214445
Merged-chr17-5753145-6	chr17	5753013	5753213	+	877.305542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_146073, exon 9 of 9)	3' UTR (NM_146073, exon 9 of 9)	-45544.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	2.7963935451254	3.25060034411695	3.27525417591518	2.84716548256136	3.18322092364304	3.65550297945362	3.20387367401481	3.48527578856022	1.25078931164075	0.0403162986489196	0.202832472542511
Merged-chr2-33908568-3	chr2	33908468	33908668	+	962.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20622.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	4.33267145970107	4.02929813452638	4.69063194988832	4.64992122498382	3.68913370661034	3.95973564815645	4.04060489355918	4.1054650696869	-1.30305040892281	0.00410170599163955	0.0408529662319178
Merged-chr17-63864372-4	chr17	63864281	63864481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	CpG	400.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	6.3642793746391	6.31961134333113	6.5453150192429	6.2520116404408	6.19434044338859	6.37246601889154	6.223191395229	6.15094917412359	-0.196371981414287	0.381375811795305	0.683605277875225
Merged-chr12-40569737-1	chr12	40569637	40569837	+	568.0	f0_balb.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	123684.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	3.73528515197494	3.03945326866425	3.3738316909832	3.22069957591305	2.87755300143507	3.19385061821368	3.004068618935	3.14326282758875	-1.19406357556642	0.0530320249837816	0.240155649975861
Merged-chr19-6910502-1	chr19	6910402	6910602	+	1000.0	f0_balb.idr	promoter-TSS (NM_001358444)	promoter-TSS (NM_001358444)	-396.0	NM_001358444	54683.0	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|PLP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	5.37548430104901	5.74280101236848	5.34639327161058	4.88766177671468	5.46793221484534	5.49151133474893	5.46216107460475	5.53905123856865	0.228890070371672	0.475993884689939	0.752656510219241
Merged-chr6-116468279-4	chr6	116468157	116468357	+	909.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7079.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	4.67651568554371	4.43828986722543	4.48375534317626	4.45926097693989	4.52487643075745	4.65591650352013	4.46337659571628	4.34915801452127	-0.0205174117965577	0.954846985948187	0.983860069670035
Merged-chr18-47318982-3	chr18	47318862	47319062	+	753.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311097, intron 1 of 17)	intron (NM_001311097, intron 1 of 17)	49906.0	NM_018744	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	3.78720693402709	3.3642982378791	3.83038716992614	3.98407506516639	3.08094285553007	3.08378162382057	3.1131055114338	3.25750098921492	-2.39105108922239	8.25798952992445e-05	0.00172779375881979
Merged-chr9-71485766-7	chr9	71485616	71485816	+	993.464294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164793)	promoter-TSS (NM_001164793)	267.0	NM_178602	28015.0	Mm.21094	NM_178602	ENSMUSG00000032199	Polr2m	AA407243|AA408799|AI303746|AW553238|D9Wsu138e|Grinl1a|mKIAA4185	polymerase (RNA) II (DNA directed) polypeptide M	protein-coding	4.1335883336731	4.40739816993735	4.89267109920017	4.12830390997376	4.66018986363388	4.70188713343085	4.80353069076294	4.92061740928667	0.780123548378354	0.0505442778082082	0.233187755661436
Merged-chr5-141018474-4	chr5	141018369	141018569	+	950.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17873.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	4.20919383208642	4.25934542914285	4.20983162530449	4.27515291292833	4.16369038014618	4.08636664857076	4.05144304639071	4.33447484960197	-0.196297231912043	0.619776603696173	0.836821765874744
Merged-chr7-27545235-4	chr7	27545123	27545323	+	960.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011116, exon 2 of 14)	5' UTR (NM_011116, exon 2 of 14)	7995.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	5.34708200899977	5.07379770016523	4.81565044966425	5.04004938782113	5.0910581274145	4.7848463222567	4.7930829237854	4.73231905648286	-0.412447457524613	0.223066797693811	0.531132387537557
Merged-chr3-119806311-4	chr3	119806185	119806385	+	981.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-22897.0	NM_019550	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	5.74835577015006	5.7217838634257	5.45483856225915	5.97250700748412	5.46792332758785	5.17528169896693	5.95709277090298	5.76891767556154	-0.207935388908767	0.497263180514812	0.766982020988234
Merged-chr17-27858276-4	chr17	27858153	27858353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080769, intron 1 of 20)	RSINE1|SINE|B4	1746.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	5.76322207729482	5.88416227568233	5.28663194723895	5.67440610653144	5.76705476856834	5.65253943114536	5.38926149941218	5.68794648469663	-0.0623528043706649	0.826025326057167	0.933219952754997
Merged-chr14-120911683-4	chr14	120911570	120911770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023579, intron 1 of 25)	CpG	476.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	6.48122887254195	6.47655286285819	6.83605104270743	6.5985750342005	6.50033195454348	6.43729993207499	6.51525028202904	6.51131763385393	-0.162518232990974	0.445719380563917	0.731683604435051
Merged-chr11-118355339-4	chr11	118355238	118355438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011594)	promoter-TSS (NM_011594)	73.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	5.92977171651384	6.21656833636317	6.07887636107326	5.74927622196986	6.05428730609044	5.74884682055158	5.85515868003834	5.83352971013651	-0.169734087997925	0.515312361506481	0.777485185146783
Merged-chr9-20869356-3	chr9	20869279	20869479	+	834.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175687, exon 2 of 8)	exon (NM_175687, exon 2 of 8)	737.0	NM_175687	319278.0	Mm.249932	NM_175687	ENSMUSG00000038884	A230050P20Rik	RyDEN	RIKEN cDNA A230050P20 gene	protein-coding	4.46872113128217	4.04498890632767	4.4694682753259	4.09628382540055	3.87077558760472	4.6011331070798	3.77633704918828	4.38870055845415	-0.193533682503258	0.683202725795346	0.870271715831715
Merged-chr2-90547994-3	chr2	90547896	90548096	+	584.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	32651.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.66018990421274	3.8698307431074	3.31158274835923	3.64020754528956	3.37700802971516	3.55368486823958	3.7882736662357	3.55239948070388	-0.208194887634137	0.686055066792897	0.871760528240684
Merged-chr6-113326757-4	chr6	113326630	113326830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_149720)	promoter-TSS (NR_149720)	-246.0	NR_149720	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	8.73360039144803	8.56614254256121	8.64872530465899	8.71504655276766	8.65483500797745	8.90463970493391	8.59579447584071	8.52138604512383	0.00942925807351646	0.952148119535235	0.983078872892764
Merged-chr5-143403839-4	chr5	143403759	143403959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025841)	promoter-TSS (NM_025841)	39.0	NM_025841	66913.0	Mm.181880	NM_025841	ENSMUSG00000079111	Kdelr2	1110007A14Rik	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	protein-coding	6.47326634892304	6.86308725843398	6.1104185931551	6.26161006171716	6.36888323562112	6.51015430292461	6.33775003673601	6.43607127405757	-0.0651911659449171	0.794967081321673	0.92069281162566
Merged-chr4-88035590-3	chr4	88035508	88035708	+	792.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2201.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	3.97810708763213	3.46957369829127	3.75873883527707	3.23405874603966	3.72146186620155	3.3490004089885	3.35768303832889	3.84893553184903	-0.139437915727877	0.80472266175229	0.924994418010242
Merged-chr9-111070804-4	chr9	111070706	111070906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13288.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	5.3668126297731	5.26777590438435	5.75543708814014	5.10469669080617	4.97640588712236	5.25931722335163	5.12611802284118	5.30587106845596	-0.394312773939917	0.221021326239115	0.529067123644727
Merged-chr7-118170364-4	chr7	118170262	118170462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001031814, intron 31 of 62)	RLTR13B1|LTR|ERVK	-40737.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	5.98575020664995	6.13086363130825	6.07054277201093	5.87154121384693	6.03659652356004	6.02562975175371	5.84380732100588	5.74534126981591	-0.135967099533003	0.581342170295792	0.816253350773532
Merged-chr3-27656942-4	chr3	27656841	27657041	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	53511.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	5.18713062981152	5.3426742860762	4.78816716482832	5.60358086517886	5.08102414088095	4.9682744508572	5.36236953125224	4.82690348588828	-0.382953820054223	0.277784571792444	0.589822221583767
Merged-chr18-67973869-4	chr18	67973779	67973979	+	899.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	40706.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	3.12097085395442	2.9038768419473	3.28044395631784	2.99366214055921	2.7527460944574	2.83683942594953	2.99239039928349	3.22767879423327	-0.484326305070775	0.438185318830938	0.726297851003868
Merged-chr9-77931069-4	chr9	77930998	77931198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	13733.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	6.24415929834848	6.78704572185276	6.6960368087922	6.65384587727834	6.27338316549255	6.34035670044227	6.13084853020612	6.42697427814577	-0.473189491682384	0.0412728453046734	0.205567130077765
Merged-chr8-125771365-4	chr8	125771275	125771475	+	909.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 27 of 33)	intron (NM_175561, intron 27 of 33)	37172.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	4.06942070442544	4.04908682373996	4.26452084763804	4.24056047946676	4.3242318187595	4.34562658734126	4.69181599195993	4.30620200466162	0.624126506893259	0.113764136996393	0.373041761057091
Merged-chr12-72084735-1	chr12	72084635	72084835	+	772.0	f0_balb.idr	exon (NM_026038, exon 1 of 5)	exon (NM_026038, exon 1 of 5)	578.0	NM_026038	67217.0	Mm.286120	NM_026038	ENSMUSG00000019718	L3hypdh	2810055F11Rik	L-3-hydroxyproline dehydratase (trans-)	protein-coding	4.45668059797281	3.93600566716121	4.60716052944462	4.06181937142379	4.54164217327323	4.16433325510724	4.22270609114764	4.60402244194185	0.283704710062784	0.511875387000818	0.775668292015302
Merged-chr15-101252775-4	chr15	101252690	101252890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-14056.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	6.91100703860823	6.75752075304084	6.65733794443751	6.87283733684995	7.20444205127363	7.14262617496483	7.39106649988484	7.49268565928527	0.693963290201132	0.000406133885531671	0.00652555391382818
Merged-chr3-27218817-4	chr3	27218712	27218912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	35808.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	7.27789612811585	7.40419497930738	7.25788829340219	7.71995801438544	7.10903021939582	7.03545374165319	7.18913267229286	7.05592758938042	-0.466335051784973	0.0196816032193698	0.126596496977365
Merged-chr15-42463489-4	chr15	42463392	42463592	+	760.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286062, intron 6 of 8)	intron (NM_001286062, intron 6 of 8)	213485.0	NM_001286062	11600.0	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	4.13032811095651	3.83537981513849	4.25971155230849	4.47692107615846	3.94236717510446	3.76297225068089	4.15662140572097	4.03485261162954	-0.593553114158935	0.192001357881252	0.491529020831217
Merged-chr5-28294176-4	chr5	28294074	28294274	+	819.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23015.0	NM_028234	381626.0	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	4.10696775127444	3.45167013314066	3.68635533542181	3.69412260869843	3.91528362385909	3.80547791911246	3.9199150276906	3.68434081141112	0.252849682648904	0.600025488829688	0.826688621826227
Merged-chr19-17255734-4	chr19	17255628	17255828	+	916.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83777.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	4.36880318818999	4.02802248622546	4.40950872301425	4.4208775417261	4.28155831106269	4.0618250242921	4.42734324561174	3.99203877126832	-0.27717012114173	0.504480764506913	0.770800870451296
Merged-chr8-107572738-3	chr8	107572633	107572833	+	783.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	15749.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	3.5946790453761	3.51405625451671	3.53843604017553	3.55863925100802	3.62859655590844	3.59530464690021	4.03613991134192	3.74959217746268	0.647075874474636	0.173771650103995	0.467932514086273
Merged-chr13-95870202-3	chr13	95870095	95870295	+	845.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	21727.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	2.99934605803364	2.9191201811113	2.99964349244015	3.19562198757993	3.76836800419903	3.33819068705495	3.6092514627826	4.30343017849626	2.56361155397801	9.65855599886049e-05	0.00197270116913311
Merged-chr3-145963744-3	chr3	145963662	145963862	+	744.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24108.0	NM_001166064	214804.0	Mm.268854	NM_001166064	ENSMUSG00000036863	Syde2	C430017H16Rik	synapse defective 1, Rho GTPase, homolog 2 (C. elegans)	protein-coding	3.81863964707556	3.23400213109005	3.90507335027045	3.60712419188893	3.27175928652825	3.51849433259601	3.39003332224787	3.62544575328067	-0.674496096340533	0.214866662408881	0.520854730840221
Merged-chr15-97348654-4	chr15	97348578	97348778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 3 of 5)	intron (NM_172293, intron 3 of 5)	-101391.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	5.78933403766794	5.86590322148247	5.95500756974919	6.26424965343013	5.89714598158582	5.83608031370931	6.21647661682314	5.68170173685248	-0.120705314548231	0.656863503950738	0.856913004429998
Merged-chr4-45455314-3	chr4	45455209	45455409	+	990.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 3 of 5)	intron (NM_001033306, intron 3 of 5)	-46543.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	3.89191852586739	3.69051751341111	4.17827280136431	4.03199813268974	3.51849076176019	3.64085937649626	3.38457561526076	3.39405659383354	-1.48808222934153	0.00334574579470944	0.0347811946723563
Merged-chr8-70374738-4	chr8	70374626	70374826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016685, intron 3 of 18)	CpG	1178.0	NM_016685	12845.0	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	6.88765059613184	6.75465924677185	6.8634407538791	6.27657977271379	6.93732125076675	6.52441659184912	6.42444683548329	6.36096472295312	-0.160055986297392	0.53530344943935	0.789648104016425
Merged-chr1-87653279-1	chr1	87653179	87653379	+	542.0	f0_balb.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	32967.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	3.46706204241977	3.13028521219472	3.74845758748575	2.90092063856249	3.43988951690235	3.1506425513583	3.39992453693861	3.35638547337724	-0.0209454293489442	0.972562734883655	0.990117466514348
Merged-chr9-120805007-1	chr9	120804907	120805107	+	1000.0	f0_balb.idr	Intergenic	Intergenic	110243.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	2.91566666344311	2.81613944561586	3.55549718130298	3.36386346827789	2.57296356621721	2.89310115135794	2.54799457497036	2.55272942759112	-2.78005310174305	0.000623997061015882	0.00921458178603179
Merged-chr19-42157903-3	chr19	42157766	42157966	+	867.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10477.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	3.09476979587679	3.08583783166243	2.97239781475948	2.94206633048045	2.90176495545705	3.20613362960479	3.13997749953482	3.09354109067776	0.260892127467478	0.648432593259322	0.852208932136954
Merged-chr19-56722856-4	chr19	56722763	56722963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007419, exon 1 of 1)	exon (NM_007419, exon 1 of 1)	491.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	5.37319583214729	6.1399254649434	5.81755241467215	5.77415235343958	5.52073180916962	5.99194540803244	5.78789504581382	5.71622822364741	-0.0838257125804309	0.773150741720006	0.911211873289787
Merged-chr10-60278714-4	chr10	60278669	60278869	+	913.1785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 1 of 14)	intron (NM_011179, intron 1 of 14)	1141.0	NM_001146121	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	3.53703607959596	3.6432711217507	4.329570018016	3.69515308800791	3.90895511903569	3.78852325697701	4.02163999938473	4.53017998926438	0.686024187835948	0.186706112604023	0.484739481013477
Merged-chr17-57029907-4	chr17	57029874	57030074	+	748.71875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010613, intron 1 of 17)	intron (NM_010613, intron 1 of 17)	1533.0	NM_010613	16549.0	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	3.13017131865582	3.43347568759522	3.06732851152442	2.97764640607372	2.98803652508824	3.36237066721807	3.3423864140782	3.12899017127712	0.191547546099327	0.741926104047643	0.898417179766546
Merged-chr3-106548391-4	chr3	106548304	106548504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133869)	promoter-TSS (NM_133869)	-602.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	6.09597084416802	6.0775327395666	6.36479361672168	6.66620395022585	6.09550841158113	5.32389667433597	6.47746267842217	6.50626336321334	-0.227568605954961	0.487737403841258	0.761057402147961
Merged-chr4-119422823-4	chr4	119422728	119422928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355214)	promoter-TSS (NM_001355214)	144.0	NM_001014900	332934.0	Mm.388911	NM_001014900	ENSMUSG00000070806	Zmynd12	AI414736	zinc finger, MYND domain containing 12	protein-coding	5.5388723935429	5.61754487448822	5.2296601135133	5.45709023328121	5.83115771684476	5.84409579196522	5.73680254167687	5.45057873204131	0.436271237317017	0.112582128513415	0.371040985475911
Merged-chr7-96546139-4	chr7	96546039	96546239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310762, intron 4 of 32)	intron (NM_001310762, intron 4 of 32)	-204175.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	6.48168678191269	6.21846864956982	6.91504100838484	6.86876593877261	5.60498190128999	5.73502157399619	6.24015019529108	6.3239100820223	-0.973849601363622	0.000861652184675403	0.0119461513153507
Merged-chr1-132338159-4	chr1	132338052	132338252	+	651.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22027.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	3.96735150643113	4.10674444611032	3.91946174107984	3.36619109399976	4.05453222762364	3.70305126901797	4.08430688683521	3.96551920558858	0.281373401099275	0.572518452166852	0.811251013052168
Merged-chr4-132951253-4	chr4	132951190	132951390	+	828.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22805.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	4.19123465550868	3.9364797049396	3.95990779953469	3.78970922618718	3.96957776794207	4.27442604997726	4.04013263161033	4.10154188070176	0.352990302089343	0.408397339712757	0.704329923147872
Merged-chr4-101198529-4	chr4	101198441	101198641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 1 of 24)	B1F2|SINE|Alu	66741.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	4.98543346764349	5.05446908402187	5.02131413460461	5.43391074695116	5.017271377642	4.75439891191491	5.03091230006055	5.29579230822422	-0.223263202988192	0.506028909543541	0.771805771672231
Merged-chr16-37597541-4	chr16	37597434	37597634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027778, intron 3 of 12)	intron (NR_027778, intron 3 of 12)	17381.0	NM_013547	15233.0	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding	6.34703952011501	6.3657076128079	6.34816084114384	6.63812492147417	6.69140319948316	6.85710922811511	6.61804340193519	6.73406272317563	0.400248669367758	0.0640326324548407	0.268784498761757
Merged-chr4-112288597-3	chr4	112288501	112288701	+	901.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102474, intron 8 of 9)	Lx2|LINE|L1	56356.0	NM_001102474	195564.0	Mm.259652	NM_177578	ENSMUSG00000070868	Skint3	A430090E18Rik|Skint-3	selection and upkeep of intraepithelial T cells 3	protein-coding	3.25113809202029	3.14220014313304	3.2515342629558	2.41694663099396	5.35241310459998	4.8560091956466	4.61830093011501	4.64052700827742	8.73267560809284	5.30631395791166e-20	1.79856248195331e-17
Merged-chr5-64818570-3	chr5	64818510	64818710	+	886.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 2 of 5)	intron (NM_008453, intron 2 of 5)	15087.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	3.63801678381283	3.49798342776911	3.58584558428188	4.33158762814759	3.24490732673466	3.33021503500237	3.51703145989437	3.34932912436678	-1.52482475532426	0.00810067797614529	0.0678111440272899
Merged-chr6-39230878-4	chr6	39230792	39230992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-24119.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	7.95148791153373	7.8310788424737	8.00572095834767	7.88747992398982	7.63033995613986	7.41130610130616	7.75670175171991	7.65158533921779	-0.38815539860546	0.0223380299781558	0.13781733863354
Merged-chr9-32521561-4	chr9	32521453	32521653	+	997.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	L2b|LINE|L2	19899.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	5.77067387964376	5.64696999654403	5.67203049745435	6.44816653514317	5.48620781553884	5.11062211269395	5.83397116319426	5.71876423600671	-0.629753543966828	0.060359369635376	0.259502269345037
Merged-chr5-143547602-4	chr5	143547511	143547711	+	881.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1095.0	NM_133703	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	4.26556683754361	3.88129810018173	3.98444333421434	4.09784446867534	4.32816430048717	4.34970987977259	4.11512971920557	4.17642732517942	0.463268832512043	0.255497706039213	0.567074250644377
Merged-chr18-23869143-4	chr18	23869053	23869253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	65183.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	7.53022879910658	7.50115393851101	7.32638913818235	7.25026246462642	7.02710456722531	7.6555282289136	6.90232819465919	6.72292684416492	-0.378822714671436	0.117400488826139	0.378942925546695
Merged-chr13-12257224-4	chr13	12257132	12257332	+	917.037476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081128, intron 1 of 32)	intron (NM_001081128, intron 1 of 32)	881.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	4.03597566017896	3.93024446698124	4.08809022859956	4.36855503655972	4.10945686880652	4.489422597096	4.52793747898108	4.31628198448264	0.561806044703825	0.185924300477995	0.483870824275444
Merged-chr13-92580461-4	chr13	92580369	92580569	+	864.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4237.0	NM_030237	79401.0	Mm.23520	NM_030237	ENSMUSG00000046957	Spz1	1700027M20Rik|AI429130	spermatogenic leucine zipper 1	protein-coding	3.80085366677925	4.1688944177019	3.68892559601471	3.93217768528006	3.81518265686085	3.86433461403062	4.11674214522245	4.21283641587005	0.259884930974745	0.568913707201416	0.809133106566958
Merged-chr4-59871102-4	chr4	59871069	59871269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 3 of 8)	intron (NM_172468, intron 3 of 8)	43887.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	6.46703613172509	6.33249537124308	6.11941393402752	6.30934557408786	6.31157751243575	5.90717032896233	6.38630601432851	6.25494405747391	-0.118865969082268	0.615284167402132	0.834387131373196
Merged-chr7-128344630-5	chr7	128344497	128344697	+	675.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46466.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	3.58248205449933	3.03176434880946	3.18259981117373	3.67788012999757	3.41669173168691	3.3603303263144	3.66104405122721	3.42438482246705	0.213922737727969	0.712851060926175	0.885082780938882
Merged-chr7-24817663-4	chr7	24817554	24817754	+	705.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1141.0	NR_045096	545936.0	Mm.376228	NR_045096	ENSMUSG00000011350	Gm5893	EG545936|Gm477	predicted gene 5893	pseudo	3.53823389432502	3.21429320022466	3.31950115436066	3.50062262340227	3.62923978588237	3.36902394529614	3.47356191017367	3.37615240247685	0.233580736774882	0.65326109386284	0.854997557892684
Merged-chr5-136202007-2	chr5	136201907	136202107	+	995.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3053.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	3.38086361530277	3.30703127712106	3.32368793633851	2.98061230022061	3.34530432260487	3.49701719616742	3.52483280553902	3.4873783581819	0.785125973764269	0.141130775236716	0.417920183491042
Merged-chr16-57487931-4	chr16	57487826	57488026	+	952.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-61316.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	5.45846864405164	5.73486227557807	6.24035158210464	5.7829636342777	5.1950103198491	4.99524878112586	5.11200608843744	5.23880701210483	-1.20713716842717	0.000108008159182106	0.00216524712863628
Merged-chr13-45438234-2	chr13	45438144	45438344	+	589.875	f0_balb.idr|f1_balb.idr	Intergenic	B1F|SINE|Alu	48502.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	3.38967858475909	3.64390055897246	3.64354619729049	3.39130984966384	3.0412297326225	3.25644111577598	3.13446427667697	3.44305819907649	-1.0894968211387	0.0511064642104525	0.234638017733481
Merged-chr17-34308300-4	chr17	34308247	34308447	+	968.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010382, intron 1 of 5)	intron (NM_010382, intron 1 of 5)	2480.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	4.85018788583086	5.04844231677811	4.77736818845752	4.63806135929486	5.05157765851922	4.56392741129903	4.67750306406152	4.91723494407148	0.000642929557180038	0.998548502289714	0.999362830169424
Merged-chr10-81525238-3	chr10	81525127	81525327	+	860.833374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1002.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	3.46742692175776	3.34362574934507	3.28927814772206	3.34050687793139	3.48381146618132	3.6388155811216	3.65699369772069	3.57258055918817	0.75717546563478	0.12222321393374	0.387413444121253
Merged-chr15-97705757-4	chr15	97705630	97705830	+	889.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028003)	promoter-TSS (NM_028003)	92.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	4.35178279108727	4.92922568432327	4.81040998419307	4.59229979254411	4.61122956237061	4.62641537628794	4.42893561519938	5.05949477005795	0.0301751832819707	0.937282763242281	0.977282228830088
Merged-chr17-56814532-4	chr17	56814439	56814639	+	990.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009056, intron 1 of 16)	intron (NM_009056, intron 1 of 16)	16469.0	NM_009056	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	5.10716691956277	5.86736998975959	5.30107627406696	5.60168804146139	6.32282011409619	6.37300338843954	6.03602880712956	6.17678096291766	1.144742479409	6.97347329543015e-05	0.00149642705967869
Merged-chr2-32260082-4	chr2	32259963	32260163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011675)	promoter-TSS (NM_011675)	42.0	NM_011675	22245.0	Mm.425076	NM_011675	ENSMUSG00000002550	Uck1	URK1|Umpk	uridine-cytidine kinase 1	protein-coding	7.14089264376632	7.10048290205871	6.84985737726137	6.95312491430243	7.23375004823202	7.16224501133598	7.16149182329857	7.01836336886165	0.187533128633619	0.322908445854591	0.634417186990642
Merged-chr2-35336398-3	chr2	35336346	35336546	+	869.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	563.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	3.47837076140641	3.63090968217886	3.69188942548012	3.3518244576559	3.57390093600343	3.65184115217551	3.57531020489356	3.58773888683798	0.203644241769488	0.676206759413677	0.867069478563613
Merged-chr6-42376372-4	chr6	42376294	42376494	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045169, intron 2 of 3)	intron (NR_045169, intron 2 of 3)	-3126.0	NM_023580	13835.0	Mm.133330	NM_023580	ENSMUSG00000029859	Epha1	5730453L17Rik|AL033318|Eph|Esk	Eph receptor A1	protein-coding	5.19415448019521	5.23654368451933	5.83786116179673	5.5985061047901	5.31023084848998	5.11750469178296	5.41120754670289	5.19148465384186	-0.413195363435815	0.186107511909756	0.484014101364226
Merged-chr4-126820103-4	chr4	126819997	126820197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035525, intron 5 of 23)	intron (NM_001035525, intron 5 of 23)	66327.0	NM_001035526	100317.0	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	5.65326167635254	5.38861717660373	5.52856385917691	5.49325829722931	5.47858071234042	5.6204810595349	5.20642864505927	5.15992292039826	-0.232481941535343	0.419898308818311	0.712991415178256
Merged-chr10-127668946-4	chr10	127668841	127669041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045171)	TTS (NR_045171)	1818.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	4.82841303178616	5.32292488361969	4.52489512626499	3.88720625920118	5.35828585310938	5.21895393073465	5.40844301673819	4.78654761144208	0.893876555566282	0.047721165903667	0.225337990437648
Merged-chr18-38159413-2	chr18	38159305	38159505	+	709.666626	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	50357.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	3.47956257146412	3.47598504117721	3.60167862782881	3.57504144789062	4.04299890124925	3.98633256118956	4.02250120433127	3.76340853980553	1.24727552406434	0.00637036942650659	0.0567079196359821
Merged-chr16-93914042-4	chr16	93913932	93914132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15535.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	5.55907146197165	5.41087750282895	5.56006858185829	5.04999541171154	7.29340508998592	7.23667418996983	7.11359693147355	7.09552916376109	2.73915564890619	2.80483782701214e-32	3.99291103377795e-29
Merged-chr15-75727807-4	chr15	75727707	75727907	+	878.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20115.0	NM_194350	378435.0	Mm.309589	NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding	3.90554832934208	4.11564825962694	4.16219554295247	4.33274375677472	4.37291169634716	4.23926073245552	4.14425153452648	4.29184364673147	0.284400003675242	0.488223174393115	0.76118893988362
Merged-chr13-21811781-3	chr13	21811681	21811881	+	889.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175657)	promoter-TSS (NM_175657)	-3.0	NM_175657	319161.0	Mm.261664	NM_175657	ENSMUSG00000069305	Hist1h4n	-	histone cluster 1, H4n	protein-coding	3.30570800811976	3.19201269276106	3.30612125217564	2.4239865179254	5.16171080639161	4.70029276991676	5.37790304703407	4.76060137480928	8.83744392244133	1.17055069829711e-20	4.38519095547842e-18
Merged-chr5-143732478-4	chr5	143732362	143732562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029749)	promoter-TSS (NM_029749)	-182.0	NM_029749	76800.0	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	7.67617153808131	8.02366339669231	7.90733132510785	7.77770367099355	8.157011790966	8.16886718437152	8.08127691998855	7.87271304004014	0.290739485140001	0.0922798600662131	0.332273783875606
Merged-chr12-108761423-4	chr12	108761314	108761514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31897.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	7.45893976014031	7.50583616052815	7.67958737890535	7.75304556089018	7.46236462678183	7.51689288548868	7.43285813509855	7.37590807959387	-0.218812944437368	0.215551204096144	0.521736972705799
Merged-chr7-80830616-4	chr7	80830487	80830687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27256.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	8.7065522157338	9.01066923818272	8.70363404891415	8.64463626701023	8.67461519954379	8.6612281887072	8.63368889957184	8.56696981908246	-0.172429106661733	0.271755781697907	0.583332472420849
Merged-chr7-45561424-4	chr7	45561333	45561533	+	914.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025330, intron 5 of 8)	B3|SINE|B2	6505.0	NM_025330	66065.0	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	4.21184995596506	4.2005566051607	3.83559209169111	4.17496966669772	4.45897437346841	4.4746812452964	4.28359675756765	4.57374353773545	0.794115620917054	0.0452845450847437	0.217850002337589
Merged-chr9-107587591-4	chr9	107587485	107587685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025903)	promoter-TSS (NM_025903)	-133.0	NM_025903	15983.0	Mm.215335	NM_025903	ENSMUSG00000010048	Ifrd2	1810034A24Rik|AA470234|AI838527|SKMc15	interferon-related developmental regulator 2	protein-coding	8.27183601208819	8.43119056737016	8.21500141008076	8.25361017991625	8.17059232819794	8.32538817066605	8.50814082597682	8.00990153087314	-0.0386507653629384	0.823464811114371	0.932313798231142
Merged-chr3-103841128-3	chr3	103841024	103841224	+	744.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142960, intron 3 of 3)	RLTR45|LTR|ERVK	8428.0	NM_001142960	229672.0	Mm.297245	NM_001142959	ENSMUSG00000044165	Bcl2l15	Bfk|Gm566	BCLl2-like 15	protein-coding	3.80714167205849	3.61627174043652	4.06162160003208	3.4908191501608	4.16291701458096	4.18762200231808	4.25304828657779	4.14803870735143	1.22407170097014	0.00606297977377796	0.0546758947570938
Merged-chr2-152724147-3	chr2	152724049	152724249	+	875.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12102.0	NM_010495	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	4.21870192491193	4.14486573739715	3.59764382574701	3.9784316814047	3.84825001485917	4.01565344260557	4.38795968002098	3.89078057788842	0.122040578801908	0.795671653892326	0.920897975671128
Merged-chr4-34388808-4	chr4	34388738	34388938	+	870.625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	-161777.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	3.46353338914431	3.18966380682471	3.20209279230268	3.58692922924377	2.96426475356076	3.12394258518805	3.00551045662759	3.01345558310419	-1.43456020913522	0.0156483428579876	0.108060954017122
Merged-chr15-40023374-1	chr15	40023274	40023474	+	917.0	f0_balb.idr	Intergenic	Intergenic	-21814.0	NR_155348	102636079.0	Mm.421381	NR_155348	ENSMUSG00000115142	Gm33251	-	predicted gene, 33251	ncRNA	3.5139949791477	3.78151790961237	3.99300243010608	4.01758201986144	3.42516631907977	3.44230187073469	3.31740558057061	3.45340478309468	-1.43673208793002	0.00574316639023614	0.0526288008907622
Merged-chr5-45493363-4	chr5	45493256	45493456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024434)	promoter-TSS (NM_024434)	-18.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	8.7823028857042	8.85030464554577	8.98890537059201	8.73796878275743	9.17835639891009	9.15984095329117	9.38619871215854	8.99751747598218	0.431315810146828	0.00551786477617717	0.0510802571080134
Merged-chr4-43031428-4	chr4	43031319	43031519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023231)	promoter-TSS (NM_023231)	-35.0	NM_023231	66592.0	Mm.331565	NM_023231	ENSMUSG00000028455	Stoml2	0610038F01Rik|MSLP2|SLP-2	stomatin (Epb7.2)-like 2	protein-coding	6.44529188528249	6.12455065408393	6.303735252057	6.34366129844372	6.33416916589634	6.32038490385849	6.54092397472178	6.68591557799463	0.246916179173174	0.276152920269202	0.588194646951987
Merged-chr11-43426249-4	chr11	43426166	43426366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013917)	promoter-TSS (NM_013917)	-18.0	NM_001131054	30939.0	Mm.6856	NM_013917	ENSMUSG00000020415	Pttg1	AW555095|C87862|Pttg|Pttg3	pituitary tumor-transforming gene 1	protein-coding	6.60127502380496	6.30480776269046	6.68061729330145	6.52136009513292	6.91172870058712	6.77950173358915	7.23656478220099	6.66060811336489	0.550348049491025	0.0146404235876233	0.103003925130319
Merged-chr5-34334535-4	chr5	34334433	34334633	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1717.0	NM_011278	19822.0	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	5.34473312825921	5.20777160555746	5.038952780508	5.34672311336375	5.47990838355847	5.66221398379665	5.48784568915656	5.72998008985116	0.592985587564246	0.036401268752102	0.189757911833199
Merged-chr2-38378490-4	chr2	38378394	38378594	+	716.287476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27186.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	3.96868719834135	4.31618602568568	3.76516474419839	3.6732468485933	4.05478621985288	3.64143741737785	3.80383744032082	3.966868615088	-0.189604958787891	0.696614821949933	0.877288506928065
Merged-chr7-97172367-4	chr7	97172264	97172464	+	884.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	90613.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	4.32601217291252	4.31632578522778	4.50706384333155	5.08732925135059	4.30052084486141	4.35523656094358	4.93701419258442	4.54555201015407	-0.135561803855744	0.758063052411201	0.904926340425875
Merged-chr18-78809017-4	chr18	78808922	78809122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053099, intron 4 of 5)	intron (NM_053099, intron 4 of 5)	-212072.0	NM_207651	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	6.27488584231208	6.40567429045963	6.25662443685307	6.17818864842945	6.70976381968396	6.78612643332415	6.37102428885585	5.91970271536249	0.32129252269298	0.220208331147608	0.528003179119194
Merged-chr12-85570028-4	chr12	85569960	85570160	+	885.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29045.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	4.5541735885209	4.28643966501175	4.63104421339808	4.6812888485725	4.41226630549517	4.60421614107783	4.27631928865872	4.47104612798102	-0.252486140770745	0.500964693060065	0.769041902372859
Merged-chr6-124641239-2	chr6	124641139	124641339	+	695.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5154.0	NM_173864	317677.0	Mm.483270	NM_173864	ENSMUSG00000079343	C1s2	C1sb|EG317677|Gm5077	complement component 1, s subcomponent 2	protein-coding	3.35333877022464	3.18082886646945	2.9860089566562	3.08160825704528	3.50802517965691	3.23105801691785	3.39176077424154	3.24061241788229	0.742582762354322	0.174340376828487	0.468720441256842
Merged-chr17-45554985-4	chr17	45554880	45555080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304956)	promoter-TSS (NM_001304956)	-720.0	NM_008690	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	5.33211255236559	5.76851802657287	5.23144335458034	5.14251212623241	5.89420230424698	5.63409978886919	5.93199838438429	5.83364226542905	0.756279276735925	0.00917475105119547	0.0741764658192915
Merged-chr9-25252504-4	chr9	25252401	25252601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205367)	promoter-TSS (NM_001205367)	62.0	NM_001205367	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	8.69653177567	8.6618991944369	8.82477398210834	8.76343656636462	8.76133892477491	8.73441236518997	8.65832521435995	8.44549573433276	-0.100892786366894	0.508244195510759	0.773396125844835
Merged-chr19-42515553-4	chr19	42515459	42515659	+	898.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3246.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	4.84165954290745	4.59098708376697	4.29680688483032	4.78345309530868	4.32320994676908	3.89575662544899	4.37082304246858	4.87032262069846	-0.527333857766216	0.23506542944694	0.545024991126869
Merged-chr18-38993038-4	chr18	38992942	38993142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175164)	promoter-TSS (NM_175164)	-103.0	NM_001361073	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	8.64086710907989	8.57766409138725	8.59716125141171	8.87114985621942	8.43794164758567	8.2935493009555	8.86468334095025	8.29228858775653	-0.233458428872151	0.212198605626187	0.517086085240203
Merged-chr19-25036966-3	chr19	25036858	25037058	+	714.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 1 of 47)	intron (NM_028785, intron 1 of 47)	37429.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	2.75173013096298	2.76252973041452	2.83090118436499	3.0069286663543	3.60868605124025	3.34517005557213	3.37644872801735	3.53283636653495	2.41858586475351	0.000372604265522406	0.00605930980480223
Merged-chr1-85986984-4	chr1	85986901	85987101	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25946.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	4.87237533058293	5.00306294096794	4.51063812946706	4.25545470465234	5.40715288195817	5.48219248218791	5.488337925554	5.6276117673388	1.57425450900972	4.39048865113664e-06	0.000132139785073681
Merged-chr16-52185111-4	chr16	52185018	52185218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 14 of 17)	intron (NM_001033238, intron 14 of 17)	153569.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	5.13779486319561	5.03217433322811	5.13865579875998	5.64021543339138	5.96208699050894	5.31689156602474	5.52945488515614	5.36157257902355	0.521241792276654	0.124032313436518	0.390831645406963
Merged-chr1-172528874-4	chr1	172528770	172528970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027972, intron 2 of 11)	intron (NM_027972, intron 2 of 11)	7740.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	5.58994839955338	5.67186993325639	5.64571191488564	5.73560554031318	6.02447756003156	6.04032616766972	5.8367230972403	5.64173884970765	0.377346646866185	0.14202675665492	0.419334764888857
Merged-chr4-134496745-4	chr4	134496624	134496824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285847)	promoter-TSS (NM_001285847)	-37.0	NM_001285845	71904.0	Mm.142343	NM_027995	ENSMUSG00000037348	Paqr7	2310021M12Rik|AV001994|BB007237|Mpra|PGLP|mPR	progestin and adipoQ receptor family member VII	protein-coding	7.38252915272771	7.46496769960754	7.45054467222964	7.70562960684694	6.83152319476217	7.14788748411016	7.09957879001921	7.35893138185845	-0.541246908341417	0.00752324461363125	0.0642776411419588
Merged-chr17-35301983-7	chr17	35301869	35302069	+	929.585693	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18578.0	NM_010390	15006.0	Mm.466882	NM_010390	ENSMUSG00000079507	H2-Q1	H-2Q1|Q1|Q1b|Q1d|Q1k|Qa-1|Qa1|Qed-1	histocompatibility 2, Q region locus 1	protein-coding	3.75303239704454	3.77842730257716	3.59129715814798	3.55614755760113	3.7566334269561	3.64882143493583	3.78727092406333	3.93966632156658	0.365342669503862	0.42688653181609	0.718216318411019
Merged-chr1-184662325-2	chr1	184662225	184662425	+	945.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50172.0	NR_040627	74971.0	Mm.410816	NR_040627	ENSMUSG00000092578	4930488B22Rik	-	RIKEN cDNA 4930488B22 gene	ncRNA	3.78895021784542	4.22320482165653	3.57240789070211	3.38501375321016	3.54005723434581	3.91174641047021	3.37173243723479	3.8362022399085	-0.296743457928159	0.589772043067692	0.820559267534966
Merged-chr12-86024619-3	chr12	86024505	86024705	+	763.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081423, intron 33 of 33)	intron (NM_001081423, intron 33 of 33)	54436.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	3.38948848162685	3.0520493186565	3.74235453305882	3.6311846209737	3.54580352207428	3.38119994633362	3.31883024191557	3.49901944563091	-0.13868307979005	0.805294680936788	0.925171083261684
Merged-chr13-63431285-4	chr13	63431200	63431400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347515, intron 1 of 15)	(CCCCG)n|Simple_repeat|Simple_repeat	445.0	NM_001347515	14088.0	Mm.126106	NM_007985	ENSMUSG00000021461	Fancc	Facc	Fanconi anemia, complementation group C	protein-coding	8.23735383953122	8.31159753390843	8.25521789817471	8.07809964565259	7.68439715146316	7.60192896507772	7.66180736757697	7.71105518591812	-0.714136708872763	1.05170004041874e-05	0.000288251664139259
Merged-chr6-108569628-4	chr6	108569530	108569730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53537.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	5.77622003863607	6.39200939556537	5.89548919341122	5.87265364320686	6.20413529827764	5.45044963143807	5.4118546447747	5.74811515068033	-0.395135683236467	0.21428559528572	0.520071846452244
Merged-chr14-101560814-4	chr14	101560724	101560924	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	48367.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	3.83877468567036	3.59886794415247	3.9946406675032	4.466690196163	3.98133073538449	4.06755836851437	4.23821527497786	3.89095275931945	0.0386516373806139	0.938192868691694	0.977531308163744
Merged-chr10-117859107-4	chr10	117858997	117859197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-13123.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	6.49771653796352	6.72776225702458	6.20427457090221	6.55454961081775	6.27321780817477	6.36123872860174	6.79402243137056	6.13613291550779	-0.148770209874718	0.554613269220614	0.800941768581685
Merged-chr17-7877560-4	chr17	7877470	7877670	+	945.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48430.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	5.32052644571251	4.4404591778749	4.759827961077	4.68291054127739	5.04310912392364	4.8962483398296	4.98421197711055	4.71686266939608	0.17510686831279	0.640174615593181	0.847994583852368
Merged-chr1-61181288-3	chr1	61181190	61181390	+	807.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-197142.0	NR_040483	77341.0	Mm.402964	NR_040483	ENSMUSG00000085447	9530026F06Rik	-	RIKEN cDNA 9530026F06 gene	ncRNA	4.05149301968946	4.18507137666812	3.95517536259469	4.30752451775357	3.88664950503751	4.07713809396461	3.78042776713515	3.95289660949681	-0.592895609918611	0.171252100760406	0.46438162520572
Merged-chr6-11926247-4	chr6	11926122	11926322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029404, exon 1 of 17)	5' UTR (NM_029404, exon 1 of 17)	341.0	NM_001168382	75725.0	Mm.212411	NM_029404	ENSMUSG00000029629	Phf14	1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|mKIAA0783	PHD finger protein 14	protein-coding	5.12163651232385	5.23300519832486	5.61463877351916	5.30552196765804	5.18487681436135	5.40007891531854	5.51256963169196	5.45808620149944	0.105246958544098	0.72276371446984	0.88928524667289
Merged-chr4-108460323-2	chr4	108460223	108460423	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175472, intron 2 of 30)	CpG-10127	897.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	5.11318032412937	4.52422601176994	4.45963256458087	4.61612721865586	4.90984521134022	5.09286830955299	4.85946791836855	5.42742737337243	0.777758663831435	0.0341225167218418	0.182391828538707
Merged-chr8-36251671-4	chr8	36251591	36251791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2175.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	6.9918511223656	7.2373944677146	7.20900224080981	7.35640237657204	6.93685710261956	6.50169274447221	6.4647451070707	6.74238858949023	-0.730358589591032	0.00077621967303483	0.0109754747927982
Merged-chr11-33932842-6	chr11	33932688	33932888	+	849.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190886, intron 1 of 7)	Tigger7|DNA|TcMar-Tigger	-30225.0	NM_031169	16533.0	Mm.6206	NM_031169	ENSMUSG00000020155	Kcnmb1	BKbeta1	potassium large conductance calcium-activated channel, subfamily M, beta member 1	protein-coding	4.6951293866155	4.41963824817114	4.19526527985041	3.91076535368697	4.11744398548989	4.22378161228583	4.39125100650042	4.04306252280336	-0.312139228071232	0.481955505006827	0.756902916640137
Merged-chr7-128392492-4	chr7	128392379	128392579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 3 of 4)	intron (NM_026418, intron 3 of 4)	25693.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	7.31091280832725	7.72201213822351	7.58375320011305	7.50428315142315	7.49991596948353	7.63254052757672	7.57229924968596	7.50680099685715	0.0158031414290931	0.929591090848267	0.974554847260704
Merged-chr3-96057916-4	chr3	96057830	96058030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013841, exon 1 of 15)	5' UTR (NM_013841, exon 1 of 15)	525.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	5.83660340654555	5.89361678285916	5.73921281915938	5.80504501962229	5.70373578689295	6.03556684869524	5.89888173351229	6.06987413264183	0.168870612850391	0.499805545333068	0.76850696952904
Merged-chr13-52188810-4	chr13	52188700	52188900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92059.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	5.66860445142967	5.49347476757253	5.26352779906387	5.46608174740805	5.80994308456968	5.76703174722323	5.71271441300953	5.50724154201589	0.38782921049761	0.15095896779402	0.433967934129002
Merged-chr1-130715885-5	chr1	130715800	130716000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027859)	promoter-TSS (NR_027859)	-79.0	NR_027859	18640.0	Mm.249861	NM_008825	ENSMUSG00000026409	Pfkfb2	4930568D07Rik	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	protein-coding	6.39309680788545	6.49249894476558	6.39422711707888	6.29807360125832	6.28928713004235	6.47860842888339	6.39643711033821	6.75702757762444	0.139434502217619	0.536221452595796	0.790269275097008
Merged-chr13-113444678-4	chr13	113444597	113444797	+	987.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR40b|LTR|ERVL	58147.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	4.97043059536666	5.13443861821106	5.35670529724557	5.5041250205729	5.10075951206911	5.14802232334664	5.30210643067119	5.00485979741395	-0.24662741920316	0.435846143904617	0.724862103693129
Merged-chr9-57759501-3	chr9	57759385	57759585	+	916.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007713, intron 3 of 12)	intron (NM_007713, intron 3 of 12)	6375.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	3.92079434053337	3.78731430813336	3.29463512165304	3.46559999820024	3.49008328906323	3.47486789639077	3.7281606634071	3.42059889137929	-0.325705933055366	0.537985193665357	0.79126455418755
Merged-chr19-8802376-4	chr19	8802279	8802479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098237)	promoter-TSS (NM_001098237)	-117.0	NM_133759	75291.0	Mm.23423	NM_133759	ENSMUSG00000071661	Zbtb3	4930563M09Rik	zinc finger and BTB domain containing 3	protein-coding	8.35177607020967	8.43907554996312	8.3150055983868	8.4786772809326	8.30814569925984	8.4477120426998	8.29793035584192	7.84637129706439	-0.198080612901266	0.267679409195382	0.579369721678467
Merged-chr12-110601387-4	chr12	110601274	110601474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030238)	promoter-TSS (NM_030238)	-21.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	7.44468852382872	7.70983152753502	7.09328067021869	7.4079846562384	7.60735777347902	7.54392468816622	7.5450541538173	7.39185378432954	0.121459742952752	0.536489216627567	0.790436255725065
Merged-chr18-39240625-1	chr18	39240525	39240725	+	562.0	f0_balb.idr	intron (NM_001361073, intron 14 of 21)	intron (NM_001361073, intron 14 of 21)	246620.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	3.23655879960334	3.02022925876695	3.18022230425764	3.11466361203344	3.08690500064578	3.23114288902165	3.10984587086995	3.34101062412803	0.217180521374996	0.693072017602645	0.875211530726656
Merged-chr7-110221269-3	chr7	110221179	110221379	+	921.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009302)	promoter-TSS (NM_009302)	-424.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	4.46899248250095	4.23972324143793	4.54425135789971	3.96290587152508	4.38384766410492	4.29433145268539	4.24256546487798	4.11570102620007	-0.0966304930851519	0.81792193515763	0.930088112829858
Merged-chr17-71221628-4	chr17	71221536	71221736	+	855.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357791, intron 2 of 19)	intron (NM_001357791, intron 2 of 19)	16982.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	4.64541071943989	5.01870431727747	5.41431232861345	5.09868848063757	4.25536333229774	4.33173196973236	4.88810291952231	4.72479534500985	-1.03583329156932	0.00885227223534378	0.0722587024586623
Merged-chr9-90112571-4	chr9	90112486	90112686	+	766.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 1 of 12)	intron (NM_001039147, intron 1 of 12)	2234.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	3.22191306952113	3.11706293526828	3.22230831993085	3.19444327340391	3.63726820688321	3.33468373887472	3.57498080604325	3.09287617493566	0.872609395400131	0.110876769795384	0.367844213342608
Merged-chr5-69592184-4	chr5	69592079	69592279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359239, intron 1 of 6)	CpG	125.0	NM_001347363	67980.0	Mm.33830	NM_027681	ENSMUSG00000029209	Gnpda2	4921523I18Rik|4933412A11Rik|BB189630|GNPDA|Gnp2|Sb52|mKIAA4008	glucosamine-6-phosphate deaminase 2	protein-coding	5.62626402600712	5.52826627009858	6.37996849621212	6.09209846796603	5.1295638323168	5.36293786694774	5.6769363150293	6.05507760335582	-0.580454818185996	0.0950479755259568	0.337341664812789
Merged-chr15-8444109-1	chr15	8444009	8444209	+	1000.0	f0_balb.idr	intron (NM_201232, intron 1 of 45)	CpG	354.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	5.57835428160163	5.29307511853919	5.96996626891437	5.24694657608547	5.18432077434337	5.43948297211911	5.23628542956653	5.54963213106967	-0.325354294099977	0.311532247679791	0.623598255825311
Merged-chr17-42837312-4	chr17	42837219	42837419	+	874.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009847, intron 4 of 17)	intron (NM_009847, intron 4 of 17)	39105.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	4.20094723350841	3.57008880283899	4.15863478994886	4.26157307788792	4.00443728089509	3.98690220160561	4.09596611826668	4.11160485749107	-0.0841759194612758	0.85457474945565	0.945235207786918
Merged-chr11-11687812-4	chr11	11687718	11687918	+	723.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025597, intron 1 of 7)	intron (NM_001025597, intron 1 of 7)	1893.0	NM_001025597	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	3.36410474860454	3.49405713554639	3.42378589585288	3.39414449267535	3.93121499334723	3.34985750993505	3.29141156211865	3.68286320978939	0.594239219052269	0.263959230613538	0.57601183628184
Merged-chr11-103389916-4	chr11	103389838	103390038	+	973.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 4 of 11)	L1M2|LINE|L1	22726.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	4.92852472242418	5.1333935486238	4.9293351304022	5.25382813264829	5.07906025965313	4.73262832434613	4.9058884113573	5.30240741353503	-0.108738995229954	0.743579927143957	0.89896181184489
Merged-chr13-99006784-4	chr13	99006707	99006907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22242.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	6.67110691228843	6.00495455935682	6.71505766265737	6.32223726070839	6.49510290665306	6.59223584082879	6.48474838922898	6.72419771113904	0.185923921142895	0.450648945876572	0.735401470002029
Merged-chr6-119220468-4	chr6	119220336	119220536	+	629.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033379, exon 9 of 9)	3' UTR (NM_001033379, exon 9 of 9)	-16090.0	NM_001033382	319734.0	Mm.440773	NM_001033382	ENSMUSG00000041460	Cacna2d4	5730412N02Rik|BE686333	calcium channel, voltage-dependent, alpha 2/delta subunit 4	protein-coding	3.90762959682634	3.71120844260646	3.59205557374477	4.1373670310874	3.83465041986163	3.64680152824754	3.74480383999517	3.90585650235647	-0.235363985899954	0.625214597174462	0.839758270979376
Merged-chr4-150869943-1	chr4	150869843	150870043	+	668.0	f0_balb.idr	Intergenic	L2|LINE|L2	14873.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	3.60831534910072	3.50956938209908	3.60884974462297	3.68361533600507	3.17919362524823	3.38726413723357	3.4391334517534	3.2082555066643	-1.07859807292737	0.0395414233130155	0.200274574643416
Merged-chr4-53028543-3	chr4	53028443	53028643	+	792.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16663.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	3.23454975874487	2.95202212488609	3.29357483971365	3.00056359366164	3.13339375833818	3.71877896837917	3.16209131491488	3.40137633831989	0.913291093223969	0.113409306113519	0.372358549741879
Merged-chr17-24454802-4	chr17	24454721	24454921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_125990, intron 1 of 13)	CpG	571.0	NM_001301784	13560.0	Mm.163132	NM_007893	ENSMUSG00000024137	E4f1	p120E4F|phi-AP3	E4F transcription factor 1	protein-coding	6.68178634898008	6.66665199056256	6.37960366678169	6.37404120223336	6.51609323662385	6.62573072592699	6.310484757087	6.02377137666395	-0.20028984455912	0.407237117103487	0.703586879884121
Merged-chr1-187215441-4	chr1	187215350	187215550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028848)	promoter-TSS (NM_028848)	-4.0	NM_029067	74717.0	Mm.250430	NM_028848	ENSMUSG00000026611	Spata17	1700065F16Rik|4930504I07Rik|4930513F16Rik|MSRG-11	spermatogenesis associated 17	protein-coding	6.38985914339189	6.23156607054704	6.92076325924814	6.6263448406166	6.17550004853859	6.15229467416436	6.52415659334637	6.40410633398485	-0.365934556365778	0.145481368340414	0.425069277382529
Merged-chr2-139919986-4	chr2	139919871	139920071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110352, intron 9 of 12)	intron (NR_110352, intron 9 of 12)	146834.0	NM_001159640	75812.0	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	7.02572765656125	7.4241121587903	7.19471055087943	6.9721080892211	7.37819824399849	7.67795382216746	7.13607336039012	6.99610894396395	0.2174858564106	0.333681154361843	0.644499372797178
Merged-chr17-80728632-4	chr17	80728507	80728707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290345)	promoter-TSS (NM_001290345)	-582.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	5.5720932733088	5.40393127963937	4.96711517865891	5.51348035574131	5.53467783151479	5.40133590491362	5.54488782288292	5.46341285207458	0.165564899403801	0.57354504267861	0.811888602285473
Merged-chr8-116314824-4	chr8	116314704	116314904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-190211.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	5.87835972526198	5.8075187094893	6.33216153037657	5.96308862313646	6.09765403683005	6.12388957459921	5.82571969906394	5.80211284582684	-0.0492241949071721	0.850438931875105	0.943621103014919
Merged-chr1-53785204-4	chr1	53785116	53785316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133810)	promoter-TSS (NM_133810)	-1.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	7.79817254640869	7.69167586671722	7.82290165965778	7.96162974331699	8.0640569982367	8.09713343365331	8.17306650448138	7.98388958429862	0.325096209855177	0.0472632489355814	0.223799281265683
Merged-chr6-122653281-4	chr6	122653171	122653371	+	963.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26847.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	5.6052350292545	5.07650415466109	5.40611645671133	5.19339730421362	5.40604759962336	5.1702154116891	5.10956333805968	4.91194210224159	-0.280184189973736	0.384633413611141	0.686137220525467
Merged-chr17-47371612-2	chr17	47371512	47371712	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183086, intron 1 of 6)	intron (NM_183086, intron 1 of 6)	2415.0	NM_183086	64657.0	Mm.216250	NM_183086	ENSMUSG00000034729	Mrps10	1110038B19Rik|AW743084|Rpms10	mitochondrial ribosomal protein S10	protein-coding	3.47422143486722	3.3843658944845	3.11968485734916	3.09761246213192	3.16887585244967	3.36273908828542	3.55830955545472	3.52334599682259	0.48502768048989	0.37595542799618	0.678846560358704
Merged-chr10-80604228-1	chr10	80604128	80604328	+	631.0	f0_balb.idr	intron (NM_019575, intron 1 of 6)	intron (NM_019575, intron 1 of 6)	1346.0	NM_019575	56214.0	Mm.273170	NM_019575	ENSMUSG00000113949	Scamp4	2410022D05Rik|AI448940|AU022392|AW742369|Sc4	secretory carrier membrane protein 4	protein-coding	3.6658252468872	3.29940870120849	3.31535475981094	3.52836064193428	3.39484711802943	3.23960238602431	3.05256843760823	3.25463449759747	-0.77523750137218	0.163883528373323	0.453752359813472
Merged-chr9-63124759-2	chr9	63124659	63124859	+	856.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22221.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	3.43003691915006	3.66098173034036	3.48682991911595	3.61958287278802	3.413135949324	3.35707986204158	3.29891158914609	3.73399975222552	-0.320207237047753	0.534063662444726	0.789066961676578
Merged-chr1-153847085-4	chr1	153847000	153847200	+	833.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2959.0	NM_001243223	240816.0	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	4.1933042602673	3.89864731702587	3.82633240786237	3.57045134962318	4.06219873185361	4.05151080933501	3.70127512528972	3.9744591700239	0.220596773723528	0.639501323136474	0.847607151813091
Merged-chr19-47147955-4	chr19	47147857	47148057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3783.0	NM_001081271	546729.0	Mm.439624	NM_001081271	ENSMUSG00000079258	Calhm1	EG546729	calcium homeostasis modulator 1	protein-coding	5.28025308579534	5.57563836268939	5.04896667626013	5.27077231863842	5.40957219037019	5.36146917242003	5.09493242645714	5.15016526746503	-0.0781101462697511	0.798429956492623	0.922049546907463
Merged-chr2-83941003-4	chr2	83940907	83941107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027964, intron 1 of 8)	intron (NM_027964, intron 1 of 8)	219.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	5.2515159756381	5.45508613224992	5.25241522145232	4.88763170970881	5.15845874166796	5.23154846248282	5.22639872218128	5.24877823007489	0.0058389292399823	0.98513321015269	0.994598605754949
Merged-chr8-117361690-3	chr8	117361581	117361781	+	932.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	12511.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	3.43938910121371	3.72230255797727	3.32470838190618	3.44454606394352	3.48535793204522	3.37475537711199	3.31304805480001	3.38181009950375	-0.334433569607585	0.518681316763659	0.779675989312394
Merged-chr12-3745609-4	chr12	3745512	3745712	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-61368.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	5.67198463032772	5.82671783588402	5.40239905697876	5.71087568083834	5.72813703491035	5.35131716286623	5.40517305251491	5.20387199109527	-0.368547546594133	0.208733474356612	0.513049756063598
Merged-chr1-37308187-4	chr1	37308089	37308289	+	807.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	8351.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	3.32787500858091	3.49172225545725	3.18778827105499	3.64596622363928	4.020363410089	3.89839905995615	3.7614019116059	3.6248202467501	1.21629971948772	0.022681793159141	0.139154228173978
Merged-chr6-54008973-4	chr6	54008899	54009099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110484, intron 2 of 3)	intron (NR_110484, intron 2 of 3)	30308.0	NR_110484	320178.0	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	4930590G02Rik	RIKEN cDNA 4921529L05 gene	ncRNA	5.55001450638012	5.4233723786103	5.83836145031538	5.73924267685236	6.05864460447211	5.91698126199726	6.16926393432868	5.83420115157558	0.568335801614578	0.0290506302824371	0.16386692585477
Merged-chr16-92400206-4	chr16	92400101	92400301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019466)	promoter-TSS (NM_019466)	-123.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	8.13608187426398	8.3925923286333	8.56806276817868	8.42320370924452	8.10934604117992	8.46460166514515	8.17859741084618	7.99820925239449	-0.24652246101242	0.170777878025198	0.463994222074314
Merged-chr10-52417464-4	chr10	52417372	52417572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030250)	promoter-TSS (NM_030250)	-75.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	9.02683410334244	8.76072236647256	8.65807615786703	9.00540203828674	8.78654886599681	8.73606626305916	9.01811690462369	8.74420297752861	-0.0609965945404229	0.710966929408882	0.884240356833917
Merged-chr8-121585575-4	chr8	121585471	121585671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4897.0	NM_026160	67443.0	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	8.46864984669931	8.56326507088806	8.47499595980385	8.30307967964085	8.47054915807491	8.66734533186246	8.43578006050481	8.36577342769122	0.0467605410473685	0.767928932125008	0.909224339615052
Merged-chr4-16163874-4	chr4	16163744	16163944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329751)	promoter-TSS (NM_001329751)	-201.0	NR_138102	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	8.65077704602396	8.85122796645835	8.80748591113634	8.48703769426485	9.17423318291953	9.2647021018294	9.1153100787755	8.7093499050751	0.472741240949609	0.0081925478834089	0.0682285562024263
Merged-chr13-65278726-4	chr13	65278619	65278819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178364)	promoter-TSS (NM_178364)	-135.0	NM_178364	170936.0	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	6.77109441577786	6.32340080597261	6.82761065055675	6.82928108025599	6.39715016822277	6.47659875427564	7.26847484656383	6.901359877979	0.14333948749691	0.595025498453845	0.823701700863203
Merged-chr2-36216677-4	chr2	36216584	36216784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-13742.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	6.47913185454132	6.14020612901103	6.66972039580688	6.58274798650068	6.74397251295553	6.45509494528341	6.76048973231184	6.47564596626918	0.199322719988932	0.388780052322457	0.68909828524669
Merged-chr5-3199105-4	chr5	3199021	3199221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144772.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	5.48460423693322	5.53564154346196	6.12503704447965	6.19300430808219	5.4472928660238	5.63411760075855	6.0748995900365	5.94139753714792	-0.151611575333012	0.633391624445411	0.844651176689519
Merged-chr14-118181012-4	chr14	118180920	118181120	+	945.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43893.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	4.85363109728327	4.43277526369695	4.25805369520659	4.86202398952644	4.65896587925139	4.54221486057364	5.15562511835746	4.78113793197826	0.345581931840493	0.382854969867638	0.684806264846199
Merged-chr15-84235498-2	chr15	84235399	84235599	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	3456.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	6.97272726344054	7.03736859267814	6.27063820092096	5.86269836632542	6.82530819316035	7.12600130718288	6.42700506557358	6.15969403848058	0.0804547715319307	0.869163260004632	0.950890741040292
Merged-chr9-62828154-2	chr9	62828054	62828254	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10633.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	2.90738338479755	2.76668486552432	3.15243694478449	3.14011512972095	3.04042757951394	3.14537341751238	3.08382644074787	3.20514254899746	0.439205505611836	0.460710677066102	0.74271114721283
Merged-chr15-59615100-4	chr15	59614995	59615195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33559.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	6.55160095260362	6.46436393352059	6.602595988315	6.8778556235019	6.98578213276405	6.94635316253415	6.80472022127401	6.87440596987383	0.361787162887392	0.0887022221320598	0.325080243917219
Merged-chr10-81517435-4	chr10	81517352	81517552	+	828.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010304, intron 1 of 6)	intron (NM_010304, intron 1 of 6)	6773.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	3.93844449801366	3.94738214043953	3.93902204992061	3.69480189322591	4.13401060281437	3.66101067412863	4.05919465972646	4.03053571041869	0.325970994665287	0.467079954290854	0.74675510582576
Merged-chr19-46761423-4	chr19	46761343	46761543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033569)	promoter-TSS (NM_033569)	-166.0	NM_033569	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	8.73273624939207	9.00921766195743	8.58417156630457	8.63353651734276	8.65196268822706	8.57519283604334	8.5068109480319	8.45050488382314	-0.250582814228572	0.128718200107523	0.399190846921982
Merged-chr4-130360044-4	chr4	130359919	130360119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153160)	promoter-TSS (NM_153160)	-27.0	NM_153160	619605.0	Mm.297196	NM_153160	ENSMUSG00000028772	Zcchc17	2810055E05Rik|HSPC251|LDC4|pNO40|pS1D	zinc finger, CCHC domain containing 17	protein-coding	8.02476454044426	8.20433821502181	7.86447846308233	7.83201611864143	7.91665016740893	8.1428414789733	7.69242670584525	8.03383480464456	-0.04132541780048	0.822625652459003	0.932143478460956
Merged-chr11-116379758-4	chr11	116379663	116379863	+	843.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 2 of 18)	intron (NM_027258, intron 2 of 18)	33269.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	4.01269107485945	4.17453428392865	3.90821238859715	3.95656189758072	4.28777427007934	4.08472966473045	4.0926778655266	4.39898208639348	0.544290740030796	0.183504328093651	0.480543562392038
Merged-chr11-20661849-2	chr11	20661749	20661949	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29872.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	3.66890291785371	3.34542597646945	3.25586701541344	3.1628829884773	3.47740918618731	3.23914334188178	3.41321944652693	3.19192460005407	-0.0813773343721027	0.882886080249998	0.955858974919988
Merged-chr18-69667429-4	chr18	69667322	69667522	+	855.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-258137.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	4.3236438197832	4.43367601528175	4.88068253430727	4.93039189608312	4.80198054042655	4.50293722340099	4.4889936724137	4.62955328794945	-0.13705531439957	0.724793069723664	0.890466133489725
Merged-chr9-61978002-3	chr9	61977894	61978094	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 2 of 7)	(CA)n|Simple_repeat|Simple_repeat	-31195.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	4.67604591406441	4.66725185802741	5.24091793649603	5.27784971588983	5.05418473262717	4.85657929476051	5.03262834856424	5.2928318100351	0.107578430241075	0.763932251471048	0.907492132891533
Merged-chr2-52891318-4	chr2	52891225	52891425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	MLT1F|LTR|ERVL-MaLR	33457.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	6.08708713929286	5.62251606805228	6.21548580857216	6.32838860676714	5.50592253180182	5.5708213621699	5.4884719727326	5.62714502617396	-0.902066402150005	0.00131195964965857	0.0167685358058983
Merged-chr12-12323775-4	chr12	12323691	12323891	+	885.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 2 of 11)	intron (NM_001146119, intron 2 of 11)	61652.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	4.35371414927484	4.12990812821422	4.18466310957092	4.50862734028734	3.64272083931788	4.11320829413395	4.02383768743701	4.31127091270502	-0.705402683362406	0.117181789759191	0.378682551510059
Merged-chr5-65491911-4	chr5	65491819	65492019	+	838.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133697, intron 1 of 4)	intron (NM_133697, intron 1 of 4)	916.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	4.02978624063142	3.82568419371197	3.98433163806059	3.75011402151232	4.15171825020084	3.78543579527206	3.81981630841696	4.02791324969618	0.202816349506885	0.648699014427201	0.852385954364293
Merged-chr10-44589509-4	chr10	44589408	44589608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130760.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	8.1706762702027	8.29141699447518	8.22425032798103	8.13164438337999	7.95836240151157	7.58018912886249	7.92105233296601	7.94687060607794	-0.435015112102163	0.0100377122993738	0.0791310581190749
Merged-chr11-104467053-1	chr11	104466953	104467153	+	574.0	f0_balb.idr	intron (NM_001359634, intron 2 of 14)	intron (NM_001359634, intron 2 of 14)	1808.0	NM_001359634	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	2.39324222400606	2.44549727128885	2.39358962106544	2.37779396580216	1.94858846051098	1.99282425361395	1.97490510662036	2.05646182200067	-3.87567468162603	0.000541419532395981	0.00823279232993239
Merged-chr6-54948808-4	chr6	54948684	54948884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 2 of 11)	intron (NM_001171007, intron 2 of 11)	22877.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	7.24474147308748	7.22806464522231	7.27777130913482	7.21107454554707	7.37483278513693	7.46482350595636	6.98810080644904	6.91171568733795	-0.0383339120338095	0.851515462898132	0.944007369647391
Merged-chr16-91549845-4	chr16	91549723	91549923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008338, intron 1 of 6)	intron (NM_008338, intron 1 of 6)	2729.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	5.95944626034988	6.12046212880489	5.39630181694607	5.85618737020176	6.0227833361691	5.84623963614775	5.99313948426192	5.97774127294541	0.160900494028577	0.548788440178985	0.797649750024352
Merged-chr4-131875432-3	chr4	131875317	131875517	+	787.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020587, intron 1 of 5)	intron (NM_020587, intron 1 of 5)	1778.0	NM_020587	57317.0	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	3.25253031156459	3.18385746898641	3.13660101457523	3.26124938485023	3.03253008025905	3.42064120710324	3.06409810336533	3.13505255161699	-0.177125771535443	0.751295949181617	0.902069673202631
Merged-chr16-93906457-4	chr16	93906357	93906557	+	838.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028083)	TTS (NM_028083)	22556.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	3.66646858318666	3.72808498578354	3.88208027314593	3.48203338257616	3.74543145544101	4.14765841359657	4.00447800506181	4.06387799925126	0.886038637365537	0.0536489903510669	0.241777780687879
Merged-chr10-62243071-3	chr10	62242970	62243170	+	736.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9368.0	NM_009314	21337.0	Mm.8054	NM_009314	ENSMUSG00000020081	Tacr2	Nk2r|Skr|Tac2r	tachykinin receptor 2	protein-coding	3.20972504246323	3.25457147864406	3.37898176312244	3.39589451621266	3.13674392879926	3.19277952054616	3.25686759900606	3.42839971899217	-0.231311324346669	0.667119968359068	0.862249318658279
Merged-chr9-61267424-4	chr9	61267293	61267493	+	974.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045334, intron 3 of 4)	intron (NR_045334, intron 3 of 4)	26416.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	4.68086455570289	5.04586194749398	4.83733614499822	5.06355776021835	4.83173634353463	4.72941529069137	4.95188326495745	4.71929374903913	-0.237466423397096	0.478899871453445	0.754764349988147
Merged-chr11-69411809-4	chr11	69411717	69411917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017426, intron 1 of 22)	CpG	1858.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	7.07109123272129	7.13175351893345	6.74850270662567	6.76923797658436	7.42815482771205	7.0844731808537	6.98836812334255	7.06734186183211	0.312725185525921	0.14486157247922	0.424036712956412
Merged-chr10-25250381-2	chr10	25250281	25250481	+	697.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 5 of 7)	intron (NM_018747, intron 5 of 7)	48782.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	3.28680683801478	3.12341341794153	3.46002214162064	3.17966028117621	3.36707018599922	3.6302264354866	3.44587432431875	3.6101424464672	0.879738896634537	0.0895530028258433	0.326714389310366
Merged-chr7-46881195-3	chr7	46881094	46881294	+	725.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19931.0	NM_013580	16833.0	Mm.16563	NM_013580	ENSMUSG00000030851	Ldhc	LDH-C4|Ldh-3|Ldh-x|Ldh3|Ldhc4	lactate dehydrogenase C	protein-coding	3.72129452894735	3.82297703454398	3.37574193250402	3.9380879233985	3.64769218920793	3.84012772943805	3.48903949958737	3.61435325996185	-0.275725535224728	0.584536347606401	0.817674741209741
Merged-chr2-153147888-4	chr2	153147806	153148006	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 11 of 12)	intron (NM_001172117, intron 11 of 12)	-13395.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	5.00434177425988	5.39559540865801	5.04211520689176	5.06269733867586	5.4168579524602	5.41795105055725	5.44362974186931	5.30110422600655	0.476310809511461	0.104606445280297	0.355678903630756
Merged-chr2-85047888-4	chr2	85047791	85047991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001136081)	TTS (NM_001136081)	-2569.0	NM_001081260	228140.0	Mm.23606	NM_001081260	ENSMUSG00000033955	Tnks1bp1	Tab182|mKIAA1741	tankyrase 1 binding protein 1	protein-coding	8.85869976285686	8.98817014309788	8.94350149046476	9.10985175717126	8.77224446311391	9.00213758019258	8.9919224170146	8.8969206582987	-0.0827552122634024	0.577999309457576	0.814391164493464
Merged-chr13-115148741-4	chr13	115148635	115148835	+	978.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46771.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	5.26014752240125	5.04496616657386	4.85245585291102	4.91670478650504	5.20314243798768	5.51615813963268	4.97948664475133	5.10285694538332	0.364380135618266	0.255567265650172	0.567157897415776
Merged-chr9-45395224-3	chr9	45395121	45395321	+	826.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_022004, exon 8 of 8)	3' UTR (NM_022004, exon 8 of 8)	-4488.0	NR_028499	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	3.87639567033815	3.91600919991363	4.2124279853693	3.86727135120531	3.10584914773953	3.67083055730886	3.7089507708691	3.72209753310355	-1.23585759458563	0.02202485972138	0.136643204925312
Merged-chr2-102707522-3	chr2	102707425	102707625	+	796.4111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077515, intron 1 of 10)	intron (NM_001077515, intron 1 of 10)	1087.0	NM_001077515	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	3.66614813190819	3.77028204454	3.51946738180562	3.51943585237206	2.8782994831083	3.13181968797635	3.21825303168807	3.46435461505104	-1.62546234391556	0.00643776624011207	0.057179156876084
Merged-chr7-143649599-4	chr7	143649449	143649649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023680, exon 1 of 7)	exon (NM_023680, exon 1 of 7)	115.0	NM_001311145	79202.0	Mm.261384	NM_023680	ENSMUSG00000010751	Tnfrsf22	2810028K06Rik|C130035G06Rik|SOBa|Tnfrh2|Tnfrsf1al2|mDcTrailr2	tumor necrosis factor receptor superfamily, member 22	protein-coding	5.28292398127345	5.26663063987601	5.19192430383056	5.33786091985871	5.27805665130913	5.12476025958287	5.13466624103658	5.12330468271937	-0.191433467493713	0.50981238235502	0.774258247922846
Merged-chr2-157142173-4	chr2	157142072	157142272	+	884.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-6950.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	4.127697501447	4.39742862487903	4.0792606782727	4.06852575683068	4.19704210967888	4.39207656598437	4.01243969522991	4.4618819429855	0.255543940394644	0.53354380532327	0.788779803917926
Merged-chr6-5297511-4	chr6	5297431	5297631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183308, intron 1 of 8)	intron (NM_183308, intron 1 of 8)	842.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	6.27611678745918	6.29101697607865	6.41823545437758	6.5000261342033	6.04420232139616	6.25226287291347	6.35174888099961	5.93251459787911	-0.351640666395785	0.133026056993825	0.406118881010657
Merged-chr11-90240400-3	chr11	90240302	90240502	+	853.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9074.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	4.28162822993234	4.09010308924127	4.20420397385142	3.83095172913545	3.57118549671799	4.20318923142902	3.58490016494066	3.59589383853872	-0.969419431367669	0.0529496308073928	0.240011575574057
Merged-chr15-97590907-4	chr15	97590809	97591009	+	954.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114913.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	5.03446616453641	4.50604184278649	5.29580289205363	5.17497495446858	4.74123147853929	4.7995815441246	4.83996403668315	4.85992768703169	-0.460495974997609	0.197146174080953	0.498437110190953
Merged-chr7-41651754-4	chr7	41651624	41651824	+	881.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360680)	TTS (NM_001360680)	-16290.0	NR_004441	75835.0	Mm.159597	NM_029460	ENSMUSG00000074164	Vmn2r-ps54	1700108E19Rik|4930562N12Rik|Casr-rs5|Gm10948|Gprc2a-rs5	vomeronasal 2, receptor, pseudogene 54	pseudo	4.73221563745069	5.1853193647918	4.93837286955023	4.65892292255041	4.4322239008282	4.52652102996325	4.32723285202551	4.52932093196334	-0.943752178003631	0.0112340740514571	0.0857144556660592
Merged-chr3-129936718-3	chr3	129936618	129936818	+	870.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025779, intron 1 of 7)	intron (NM_025779, intron 1 of 7)	33488.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	3.96199134253834	4.14550621412612	3.91293779365401	4.13487901996689	3.60466289948729	3.92799831128921	3.94578708778315	4.05391160393628	-0.457733090425702	0.30690541645076	0.619270345990721
Merged-chr6-92127327-3	chr6	92127284	92127484	+	918.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347342, intron 2 of 14)	intron (NM_001347342, intron 2 of 14)	34951.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	3.45830255640189	3.27539090787097	3.13900938880202	3.36865300252906	3.07017841672754	3.12040603580273	3.06684547439784	3.01058654229231	-0.994730768229341	0.0795366747538211	0.305407615703848
Merged-chr8-8452392-4	chr8	8452282	8452482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	208391.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	8.11106424188594	8.31115268224375	8.30971958982124	8.45891171016706	8.21298061786376	8.32202477820658	8.40161874792634	8.16397976911226	-0.0427685359240775	0.793479419026214	0.92004938450921
Merged-chr16-91905473-4	chr16	91905395	91905595	+	783.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010587, exon 34 of 39)	exon (NM_010587, exon 34 of 39)	26135.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	3.51105064069291	3.4633631489015	3.51156192023392	3.02731408823397	3.39614012651904	3.33715495312588	3.39066408046992	3.45694598042261	0.0503737133008805	0.926543963997145	0.973020473242623
Merged-chr5-52461839-3	chr5	52461680	52461880	+	743.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001256059, intron 1 of 11)	URR1B|DNA|hAT-Charlie	9763.0	NM_001256059	100503884.0	Mm.332379	NM_001256059	ENSMUSG00000045790	Ccdc149	Gm447	coiled-coil domain containing 149	protein-coding	3.99638276553188	4.13375805616777	4.32760218306796	3.76348918537584	3.83486698902968	3.79690693465353	3.7218771660159	3.94646381929021	-0.648501920920281	0.161660592827279	0.450612442702572
Merged-chr6-49267119-4	chr6	49267014	49267214	+	901.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3062.0	NM_001362188	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	4.55223456790539	4.07566517798534	4.42851950027913	4.31378060958593	4.77939381981705	4.60255687463002	4.36467336493946	4.76699654582248	0.667976618190552	0.0787576770822417	0.303677827575129
Merged-chr5-43722232-3	chr5	43722146	43722346	+	718.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359906, intron 26 of 37)	intron (NM_001359906, intron 26 of 37)	59867.0	NM_001359903	231214.0	Mm.44434	NM_172274	ENSMUSG00000039765	Cc2d2a	5730509K17Rik|b2b1035Clo	coiled-coil and C2 domain containing 2A	protein-coding	3.59790833178266	3.39280620949379	3.32468565424733	3.53144126255439	2.58843185184604	2.70405123983934	2.67257710082351	2.67773128080788	-5.60236499969247	3.48594147818188e-07	1.33400983051349e-05
Merged-chr11-103258415-4	chr11	103258320	103258520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	8981.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	6.31639954473174	6.1873907987005	5.80991286324585	5.93511614203995	6.31452952484377	6.06306076655805	6.21389463799047	6.12575984949375	0.184595639951088	0.453427099917154	0.7375002866643
Merged-chr6-97291528-3	chr6	97291454	97291654	+	888.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 23 of 23)	intron (NM_145148, intron 23 of 23)	-38774.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	3.6978947017706	3.46298009502786	3.88090838572912	3.71891122816366	3.4931870806936	3.65846364283956	3.47217259275384	3.22937252704571	-0.733619364049852	0.154431898567132	0.439762686354212
Merged-chr2-68859856-3	chr2	68859748	68859948	+	895.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1593.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	3.14900990542003	3.81225618153231	3.85430080330127	3.92127163197866	3.83828819878192	3.66446346032832	3.59059860086876	3.48759683590992	-0.20518728966606	0.714900040084225	0.886003030420421
Merged-chr2-70990366-4	chr2	70990272	70990472	+	971.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 3 of 9)	intron (NM_145524, intron 3 of 9)	28002.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	5.34187716460882	5.28453038166244	5.43254003109191	5.76013970940627	5.60201948441441	5.00163528439877	5.54115540441303	5.82196544586038	0.0785246252584478	0.80723683760623	0.925716716299181
Merged-chr9-90055436-6	chr9	90055246	90055446	+	926.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 1 of 10)	AT_rich|Low_complexity|Low_complexity	1079.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	3.80509310134108	3.78846865752385	4.08350458303183	3.43250331078894	3.83032514533725	4.20921677814088	3.62668913106365	3.63867303444002	0.166284175004772	0.743096809724402	0.89875937230248
Merged-chr14-64624416-3	chr14	64624336	64624536	+	736.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28095.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	3.29430011846909	3.55120533571936	3.41132389666712	3.28056729162106	3.58956181708715	3.20916009103091	3.08919390237409	3.74911922191994	0.187679689301455	0.740110237670542	0.897683586969888
Merged-chr11-98150512-4	chr11	98150400	98150600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028149)	promoter-TSS (NM_028149)	-884.0	NM_028149	72194.0	Mm.218350	NM_028149	ENSMUSG00000020883	Fbxl20	2610511F20Rik|4632423N09Rik|AI849362|AL117906|C86145|Fbl2|Scr|mKIAA4147	F-box and leucine-rich repeat protein 20	protein-coding	6.17850828334165	6.27016383975011	5.7535601263849	5.75838286491384	6.2155929929159	6.21408287088808	5.92029727606194	6.03447498740724	0.16085087968849	0.541324372423724	0.793203558709177
Merged-chr9-62857427-3	chr9	62857344	62857544	+	924.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102468)	promoter-TSS (NM_001102468)	-660.0	NM_001102468	75600.0	Mm.440576	NM_138304	ENSMUSG00000032246	Calml4	2010002G05Rik	calmodulin-like 4	protein-coding	3.95475761230368	4.16680486300147	4.23516864012686	4.19714555009963	3.90586647256637	4.02316058088896	4.33351066726891	4.00393754705126	-0.195010343570387	0.644438502120527	0.850224984568163
Merged-chr1-164248156-4	chr1	164248041	164248241	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054087)	promoter-TSS (NM_054087)	-905.0	NM_001276455	116914.0	Mm.35444	NM_054087	ENSMUSG00000040918	Slc19a2	AV276020|AW322295|DDA1|THTR1|TRMA|ThTr-1	solute carrier family 19 (thiamine transporter), member 2	protein-coding	4.02764037041858	4.11756950839093	4.41707595998969	4.04137476628369	4.1745890223982	4.04583947517002	4.35865196629264	3.92097665939844	-0.0376231445576747	0.929211084016544	0.974356826640939
Merged-chr6-31178437-3	chr6	31178338	31178538	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	40036.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	3.25384822887006	2.98184470112799	3.14237256254477	3.21997229243428	2.82874205631519	3.06288373680893	3.13056512856175	3.30481515653353	-0.267245050370297	0.651412707181459	0.853936064978361
Merged-chr10-20104642-4	chr10	20104470	20104670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 18 of 29)	intron (NM_008580, intron 18 of 29)	-44350.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	8.16641729414653	8.17911382002429	7.79168229957329	7.90016295956748	8.0490282252945	8.25346506402895	7.82354873683258	7.70399309241659	-0.0554482624228893	0.776280153909714	0.91286565241685
Merged-chr7-88206585-2	chr7	88206485	88206685	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71500.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	3.09361300548718	2.88024848567769	3.03701242441283	2.82926096991314	3.10682991240375	2.95618329436542	2.90512941259557	3.03541229821336	0.219497973055236	0.709484872496759	0.88356965688823
Merged-chr19-4231818-4	chr19	4231705	4231905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027196)	promoter-TSS (NM_027196)	-88.0	NM_027196	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	8.19404467323933	8.45535605202951	7.89279715891565	7.89185467089397	7.98205038979978	8.06298559538743	7.9950658044423	7.95271996871435	-0.166328925189009	0.379751490205296	0.682256778851632
Merged-chr11-74827162-4	chr11	74827050	74827250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3774.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	6.4880365190949	6.16529899105725	6.6472222754666	6.37874444817734	5.65995771070413	5.770595328017	5.861875412647	6.1531915872846	-0.863935718623131	0.000728046366305277	0.0104521202717312
Merged-chr10-42502045-4	chr10	42501917	42502117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017472)	promoter-TSS (NM_017472)	-37.0	NM_017472	54198.0	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	9.11135854771582	9.21410172128989	9.34041003691128	9.07269229564716	9.25918771186832	9.36186051092475	9.43364689870157	9.09715437262722	0.132491459832028	0.384019288193598	0.685644380524807
Merged-chr4-39616641-2	chr4	39616563	39616763	+	627.0	f0_balb.idr|f1_balb.idr	Intergenic	Lx9|LINE|L1	166370.0	NM_001081095	75471.0	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	3.12786033941916	2.86502668897642	2.96001858485899	3.04336261126912	2.96946616296618	2.79757155021005	3.00762570472092	2.8970264595877	-0.350284111778174	0.559180447572084	0.803643367386073
Merged-chr1-164080121-3	chr1	164080027	164080227	+	814.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011346, exon 9 of 9)	3' UTR (NM_011346, exon 9 of 9)	18051.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	3.40226686195022	4.12339129111027	3.46822701815586	3.43017839590009	4.01502803548936	3.97740913682403	3.88439772096498	3.52903432184266	0.646669285219388	0.227313607024485	0.535996291786981
Merged-chr11-76531201-2	chr11	76531101	76531301	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198894, intron 1 of 22)	intron (NM_198894, intron 1 of 22)	-21782.0	NM_198018	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	3.43184596431789	3.05037294697507	3.10116166309688	2.86017542461603	2.99533815090184	3.27694681789435	2.88990367488567	3.52364974205749	0.269325467445345	0.666847990230258	0.862159276166032
Merged-chr16-31757838-4	chr16	31757754	31757954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252436, intron 1 of 22)	intron (NM_001252436, intron 1 of 22)	3504.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	5.81829011764	5.9996096184197	5.59762824067439	5.46597290886197	5.79655571667444	5.74600745506968	5.39798245914534	5.45155237316892	-0.185335826107772	0.524029422740336	0.782704938068323
Merged-chr19-43771644-4	chr19	43771535	43771735	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-10673.0	NM_013806	12780.0	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	5.37472761342549	5.29892508285843	5.22598735057711	5.41574701887968	5.34964471214944	5.26825173567779	5.32052497854524	5.05303220531455	-0.144819997485795	0.616440090235275	0.835000174751781
Merged-chr8-22227289-4	chr8	22227199	22227399	+	794.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019576)	promoter-TSS (NM_019576)	-4.0	NM_001205253	56229.0	Mm.32067	NM_019576	ENSMUSG00000031480	Thsd1	4833423O18Rik|Tmtsp	thrombospondin, type I, domain 1	protein-coding	3.67628920835976	3.62397980741902	3.51549247045421	3.75110227912879	3.75967413188599	3.22907595155649	3.6616965463155	3.72414772569009	-0.103225869034797	0.839842915160269	0.939131078101489
Merged-chr1-136578418-4	chr1	136578326	136578526	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46475.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	5.71258995466579	5.17247925123897	5.2322038334213	5.93694798523883	5.44266936653918	5.06628302275732	5.68439133775263	5.90510085305701	-0.0119954182117564	0.972670699630399	0.990158712105621
Merged-chr6-125148605-6	chr6	125148536	125148736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039669, intron 1 of 9)	intron (NM_001039669, intron 1 of 9)	3412.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	5.38690177465809	5.44013430687248	5.44325782145354	5.078534068245	5.03179918446247	5.24511133300872	5.41585988559878	5.46622013654038	-0.0697950756418546	0.820305007155932	0.931216561407907
Merged-chr2-103008369-4	chr2	103008278	103008478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65135.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	7.09069644948612	7.12793222831431	6.54435649432191	6.93544907337337	6.68786655229359	6.85528068610451	7.05620786055173	6.92963470778576	-0.0872667194153115	0.692549403546653	0.874986225905201
Merged-chr7-118494623-4	chr7	118494519	118494719	+	908.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2644.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	4.71725457774868	4.60782283224994	5.12669938332965	5.08748614784319	4.55192527939085	4.24296756651373	4.31228056901105	4.47021760517478	-1.0951930777472	0.0042865965861592	0.0423436908595356
Merged-chr2-5769880-4	chr2	5769797	5769997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55135.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	5.94349286687925	5.91602920559993	5.57697426473148	6.25399862796309	6.09575660220688	6.02663260255804	6.1605541771626	6.24279532718236	0.257194012120799	0.331245755100892	0.642427770423868
Merged-chr2-148478497-4	chr2	148478397	148478597	+	829.233337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34962.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	5.53056187676782	4.53104502625519	5.26575066655358	5.06959047152979	4.40887524542799	4.87531427556357	4.71536345354028	4.73457932752537	-0.914555496395269	0.018982147714673	0.123548856271279
Merged-chr6-134261585-1	chr6	134261485	134261685	+	716.0	f0_balb.idr	intron (NM_001303102, intron 6 of 8)	intron (NM_001303102, intron 6 of 8)	-134744.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	3.7701224848092	4.09381222088543	4.32392938217749	3.79619155806706	3.91987247844824	3.59058347095971	3.58704308942071	3.53640570857442	-0.963584582738994	0.0570301081268517	0.250277653919706
Merged-chr18-36525687-4	chr18	36525590	36525790	+	906.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2462.0	NM_172830	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	4.29983921895146	4.54743384219401	4.3496149674162	4.36330560884857	4.76730197290596	4.57412743010888	4.83700978622099	4.95095116218124	0.864337708966033	0.0144198667141167	0.101986455966228
Merged-chr13-64315779-4	chr13	64315714	64315914	+	929.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3104.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	4.22847833035681	4.34434293629466	3.80492012056781	3.98109291852472	4.63747990012564	4.40155269997314	4.21035102629111	4.22650221159766	0.701010109785243	0.0972927060511836	0.34176565780078
Merged-chr5-76524842-4	chr5	76524762	76524962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4445.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	5.60810598907534	5.91815293568175	6.36937781705122	6.12864902482309	5.90775207814256	6.10003917914949	6.18147100103988	6.05178709756017	0.0293997051555669	0.912380565729429	0.967207481621882
Merged-chr7-122018481-4	chr7	122018375	122018575	+	941.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028758, intron 1 of 16)	intron (NM_028758, intron 1 of 16)	2723.0	NM_028758	74105.0	Mm.29619	NM_028758	ENSMUSG00000030872	Gga2	1200007E24Rik|mKIAA1080	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding	4.63972079605323	5.04049702139078	4.82899026402202	4.28250117724312	4.66701066595819	4.81513897856505	4.80560430021886	4.59623779260832	0.0149925332265647	0.968724800576659	0.988762939668968
Merged-chr2-45554925-4	chr2	45554819	45555019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141686.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	5.26645753445029	5.18868718052128	5.20373185829202	5.66609215494064	5.13458394651701	5.27854022288723	5.41371610872945	5.32424631791293	-0.151335426624726	0.625259565136638	0.839786976127647
Merged-chr19-46131827-4	chr19	46131731	46131931	+	749.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007703)	promoter-TSS (NM_007703)	-68.0	NM_007703	12686.0	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	3.64719010330183	3.7262546988719	3.416871584819	3.82328603741212	3.41366479986744	3.59377729395781	3.82632560987586	3.74710437259845	-0.069396152784422	0.889578598992514	0.95860823232862
Merged-chr18-54901069-4	chr18	54900972	54901172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	89108.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	5.84713670244467	5.29741023466324	5.91766694673066	6.42390060465042	5.98583436521862	5.76364110704138	6.16727091139359	5.79549791933885	-0.0183273541987017	0.954776796576117	0.983838959554429
Merged-chr11-54390617-2	chr11	54390517	54390717	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029105, intron 5 of 13)	intron (NM_029105, intron 5 of 13)	19965.0	NM_029105	74847.0	Mm.486538	NM_029105	ENSMUSG00000020332	Meikin	4930404A10Rik	meiotic kinetochore factor	protein-coding	3.21367784121125	3.21122206542559	3.53219836482553	3.15013682125022	3.41000963292502	3.32528228196326	3.37023312369905	3.08676649409984	0.107977535694223	0.844240364438803	0.940887937958057
Merged-chr2-156180367-4	chr2	156180254	156180454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291114)	promoter-TSS (NM_001291114)	-116.0	NM_133242	170791.0	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	8.24303404148925	8.36676270318743	7.87917729432364	7.78814182891807	8.18810556510252	8.43337496679695	7.84873324915127	7.98950708645967	0.0583278705762665	0.782362327985474	0.91529005173258
Merged-chr4-62696139-3	chr4	62696050	62696250	+	751.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 11 of 15)	intron (NM_134257, intron 11 of 15)	22176.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	3.63919097832877	3.89802670456266	3.69140075052565	3.70949654397985	3.50350831444413	3.45836724150605	3.67618409763522	3.52777113644051	-0.622661482216796	0.196515350296103	0.497660945922854
Merged-chr5-122602451-3	chr5	122602398	122602598	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009879, intron 6 of 18)	intron (NM_009879, intron 6 of 18)	12046.0	NM_001358919	12589.0	Mm.10125	NM_009879	ENSMUSG00000029469	Ift81	AW060663|Cdv-1|Cdv-1r|Cdv1	intraflagellar transport 81	protein-coding	3.63253616706687	3.15034407918745	3.33681937296412	2.49513414977502	4.75205104682687	4.82222103130055	4.85477899488505	4.31526557903271	4.40687258620365	0.00184134126844776	0.0219355364262499
Merged-chr12-40520037-4	chr12	40519934	40520134	+	859.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	73981.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.86974215798065	4.6855396781621	5.12195684215134	4.70162689458935	4.79763864519474	4.73355890892755	4.66169590700442	4.7199749133937	-0.231624995187646	0.500537102932147	0.768850577358824
Merged-chr2-112457201-1	chr2	112457101	112457301	+	856.3333130000001	f0_balb.idr	intron (NM_133749, intron 1 of 4)	intron (NM_133749, intron 1 of 4)	2176.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	3.92288592569819	3.87870743688539	3.5534058470331	3.88870143505351	3.54526301369122	3.67192942610551	3.34670184376859	4.27793791253688	-0.173241030253787	0.749662332587996	0.901415182376325
Merged-chr17-56897870-3	chr17	56897766	56897966	+	822.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022328, intron 6 of 11)	intron (NM_022328, intron 6 of 11)	22233.0	NM_030141	78625.0	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	3.94588555945955	3.60564651570301	3.946499786291	3.56330682005414	3.82515485754142	3.34579102310448	4.31740597963797	3.79771346967167	0.27003628866786	0.613505101714612	0.833308137450278
Merged-chr8-91134118-4	chr8	91134020	91134220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302337)	promoter-TSS (NM_001302337)	-93.0	NM_001302268	14339.0	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	9.46790420121216	9.57681432079154	9.5957046361853	9.61660487204734	9.44317763571459	9.54663334159972	9.63043034218608	9.50216274481571	-0.0439524998300518	0.742645935632154	0.898549950744719
Merged-chr10-88352857-4	chr10	88352760	88352960	+	922.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 1 of 6)	intron (NM_027878, intron 1 of 6)	4215.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	4.90301955115382	5.36092060913241	5.01215058051738	5.13355242082764	5.37578198763008	4.83644775523863	5.08693426814517	4.74063484511549	-0.129484740980405	0.707821187483825	0.882638079860528
Merged-chr12-110840969-4	chr12	110840840	110841040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011973)	promoter-TSS (NM_011973)	-1.0	NM_011973	26448.0	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	5.67908800335388	5.76838746723922	5.35915482777952	5.56021726005045	5.96276588254072	6.10901513334091	5.74988936264879	5.6500166316946	0.462240549908052	0.0865359125732928	0.320859494767641
Merged-chr8-70808447-3	chr8	70808358	70808558	+	844.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008353)	promoter-TSS (NM_008353)	9.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	3.00778018872809	2.91562350659481	2.72208171273272	3.08395331653838	3.47440019896568	3.35694898935088	3.06014194985084	3.18685641091288	1.29659556276436	0.0361976330491977	0.18911900236169
Merged-chr7-141228705-4	chr7	141228631	141228831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081118)	promoter-TSS (NM_001081118)	-57.0	NM_001081118	101471.0	Mm.248656	NM_207211	ENSMUSG00000038611	Phrf1	AA673488	PHD and ring finger domains 1	protein-coding	6.20184445114498	6.62953884279327	6.32336165935214	6.27843242410139	6.43331306065191	6.95817087423503	6.60907234531163	6.57745247208703	0.413573633211631	0.0797215908032436	0.305763270028097
Merged-chr2-6335537-4	chr2	6335441	6335641	+	977.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080548, intron 1 of 14)	intron (NM_001080548, intron 1 of 14)	12784.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	5.25004827369658	4.7955272025061	5.28102212490205	5.74192005967331	5.21788703853092	5.12086514762039	5.19436499899591	5.08541756051337	-0.319525728883283	0.358667012301344	0.664653538577493
Merged-chr18-20741683-4	chr18	20741584	20741784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	4720.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	6.51287572919728	6.94073107694619	6.80304810296585	6.70054397069216	6.07701462825806	6.22725728902148	6.41414723002193	5.84057222259948	-0.880178049312579	0.000240894824418119	0.00423583317867028
Merged-chr5-36695851-7	chr5	36695760	36695960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081232, exon 1 of 9)	5' UTR (NM_001081232, exon 1 of 9)	161.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	5.99311639085527	6.38479650558547	6.43917505156171	5.61415783915962	6.40987648188635	6.10136243470269	6.35648765249481	6.48246505508173	0.322636084764015	0.251002821882971	0.562234630670233
Merged-chr17-31564507-4	chr17	31564401	31564601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016670)	promoter-TSS (NM_016670)	-272.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	8.16936833769498	8.71265724047568	8.31355661596739	7.86332021492405	8.75068554524637	8.80364202165469	8.58146190195619	8.06014154724232	0.356401169533989	0.126989026496045	0.396427872328494
Merged-chr11-85844259-4	chr11	85844149	85844349	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	11634.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	4.20473246187665	4.03232610689281	4.40580194023134	4.24982839244985	4.09602924307339	3.92078397935247	4.0505737502525	4.0161085956164	-0.524941435665708	0.205856555087328	0.509640142414557
Merged-chr14-55092468-4	chr14	55092380	55092580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039198)	promoter-TSS (NM_001039198)	-432.0	NM_001039198	239102.0	Mm.441113	NM_001039198	ENSMUSG00000040721	Zfhx2	ZFH-5	zinc finger homeobox 2	protein-coding	5.77976588323588	5.99988303934933	5.25714469408695	5.61983947509802	5.91612474495948	5.955201994968	5.88609142841605	5.45243692683796	0.208871415561514	0.47877157797757	0.754690163973656
Merged-chr14-14801011-4	chr14	14800907	14801107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19808.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	6.27206413536545	6.04037774013391	5.88193556326266	6.55823456953111	6.12117371149748	5.5721531308058	5.98829569328062	5.94811293231031	-0.463788664187932	0.0988679676799625	0.344693043736366
Merged-chr17-48408585-3	chr17	48408438	48408638	+	958.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110832, intron 1 of 9)	intron (NM_001110832, intron 1 of 9)	1282.0	NM_001110832	18044.0	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	3.94418479541826	3.6986170074082	4.17741711891767	4.001238990998	3.92993318275661	4.30369527410831	3.76769724947765	4.25690693969245	0.299202924890036	0.510591636148688	0.774867939359323
Merged-chr2-122573811-2	chr2	122573691	122573891	+	802.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	37486.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	3.27718391831676	3.55360962486721	3.47874443746516	2.90595122295869	3.19766286155554	2.93740179819444	2.89357556305019	2.90072639696825	-1.30520140806895	0.0461256661379101	0.220525173967645
Merged-chr19-21646283-4	chr19	21646209	21646409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025423, intron 1 of 3)	MTD|LTR|ERVL-MaLR	6482.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	5.08779059357659	5.12482450696674	5.60474607786099	5.46792079839567	5.27727251820733	5.29950626444374	5.34610625945371	5.04938679036365	-0.177394869673767	0.565536648029985	0.807606393349777
Merged-chr2-75965199-4	chr2	75965110	75965310	+	919.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12969.0	NM_001081228	620631.0	Mm.389286	NM_001081228	ENSMUSG00000075272	Ttc30a2	-	tetratricopeptide repeat domain 30A2	protein-coding	4.6419744028319	4.40469387848171	4.09610971295736	4.48631405149133	4.37678784997946	4.65785590459622	4.65686376951696	4.74621777062872	0.409887304453683	0.283299207176156	0.595360804251864
Merged-chr5-92107440-4	chr5	92107278	92107478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	B2_Mm2|SINE|B2	-23634.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	4.84616010834898	4.7756715411532	5.31228046011315	5.12413834644902	4.97634428887105	5.13775626126481	5.39130763799615	5.22230635443327	0.280842072499699	0.391554950525009	0.691292697094295
Merged-chr10-40229956-4	chr10	40229862	40230062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042556, intron 7 of 9)	intron (NM_001042556, intron 7 of 9)	17017.0	NM_001042556	67239.0	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	5.73621274174674	5.57688194821197	5.73721866630344	6.06978441443672	5.77461300641274	5.70254381781646	5.3477900676031	5.55075516739201	-0.331266140366979	0.243415555867945	0.554524091960604
Merged-chr6-117907727-4	chr6	117907620	117907820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166428)	intron (NM_133834, intron 1 of 3)	-84.0	NM_001166428	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	7.77655588512996	8.18391579130835	7.84735883653143	7.84747134535853	7.84624762370152	7.89021297441503	7.80942652523142	7.92905667870728	-0.0721240849152178	0.677896713427943	0.867919959800118
Merged-chr17-35823075-4	chr17	35822967	35823167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008027)	promoter-TSS (NM_008027)	-290.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	8.09650881841857	8.13634865105247	7.94794371552599	8.12061489342872	8.09327804145795	8.41529208300243	8.43879483660721	8.28901880590963	0.295636823817872	0.073555208835102	0.292148106114264
Merged-chr8-69071188-4	chr8	69071057	69071257	+	976.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153054, intron 5 of 16)	intron (NM_153054, intron 5 of 16)	-17579.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	5.93285641905381	6.28413261293713	6.44431045877083	5.82281328756178	5.1942383776924	5.54063897357897	5.12002252042019	4.97785467882905	-1.54817384594585	6.2651583141855e-07	2.28106242273867e-05
Merged-chr17-34263213-4	chr17	34263123	34263323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207105)	promoter-TSS (NM_207105)	-4.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	6.74797756736046	6.82353281099538	6.60541390830879	6.38286873490808	7.47575845875207	7.15963991562101	7.06647884419567	7.23728807966955	0.853417433583994	6.48706594337608e-05	0.00140818196640307
Merged-chr5-129008590-4	chr5	129008488	129008688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007941)	promoter-TSS (NM_007941)	-16.0	NM_007941	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	7.07177383585922	6.91377866697023	7.21827922649255	7.08999312162742	7.00502019762103	6.92740508765423	7.13954047583125	6.94336925351957	-0.0951361715149587	0.618575010391763	0.836022749315106
Merged-chr15-72833728-6	chr15	72833566	72833766	+	864.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164641, intron 17 of 17)	L2|LINE|L2	-23342.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	3.47068374566302	3.56602628457516	3.90291587297968	3.41963862114514	3.85998386350716	3.71161185085479	3.92996508545541	3.98890892084534	0.855882445479759	0.0716822638454978	0.28759775989283
Merged-chr6-87122413-8	chr6	87122317	87122517	+	827.197937	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17671.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	3.52262828916182	3.40604392392951	3.79588252550259	3.82089375048872	3.55039006950791	3.91641481375697	3.7301192802038	3.97622063682537	0.419740638732081	0.3981860445232	0.696409761244211
Merged-chr19-37550471-4	chr19	37550368	37550568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175353)	promoter-TSS (NM_175353)	50.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	5.67575365907907	5.45210441353035	5.74546925279631	5.03932840779894	5.24913347778262	5.50192325285562	5.35970205781068	5.46872504311747	-0.16406686999881	0.604023909050128	0.828350269166784
Merged-chr11-106666832-4	chr11	106666707	106666907	+	935.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 13 of 14)	intron (NM_001305158, intron 13 of 14)	48474.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	4.03963917524134	4.13042847496429	4.16973606780992	3.72242118783867	4.009547194231	3.96552318836021	3.6616340909317	3.78805405252008	-0.409905119089352	0.377237658760204	0.679937183482124
Merged-chr11-75164974-4	chr11	75164870	75165070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001002764)	TTS (NM_001002764)	3182.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	5.57670045750165	5.69622181074124	5.83900543992096	5.6075374392292	5.56002171070276	5.42644998738916	5.07925033743418	5.62544062616268	-0.400866084593149	0.160407366236205	0.448612467931589
Merged-chr3-95632914-4	chr3	95632815	95633015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019561)	TTS (NM_019561)	7935.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	5.53408090464806	5.38369836239998	5.79887347608971	6.05484044283572	5.7859142809031	5.84969386793628	5.72112558456133	6.09019158458446	0.208302525023828	0.474096628745474	0.751607118426792
Merged-chr5-120888673-1	chr5	120888573	120888773	+	560.0	f1_c57bl6.idr	Intergenic	BGLII_B|LTR|ERVK	-1060.0	NR_126529	23960.0	Mm.389688	NM_011852	ENSMUSG00000066861	Oas1g	AI449562|L2|Mmu-L|Mmu-L2|Oas1b|Oias-1|Oias1	2'-5' oligoadenylate synthetase 1G	protein-coding	3.12891387193984	3.0637807878724	3.12934045547002	2.94427934747461	3.13997158632789	2.9923308035512	2.7370328863964	3.07084184226071	-0.267200611173225	0.658277801609961	0.857745523643216
Merged-chr18-84951613-4	chr18	84951509	84951709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025969)	promoter-TSS (NM_025969)	-85.0	NM_025969	67105.0	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	8.56214826423901	8.63244053734567	8.4952875459942	8.76286584904653	8.79070563453778	8.6579496376162	8.66284118393931	8.32978451273138	0.00342707421998353	0.983689783067616	0.994108657432877
Merged-chr7-44851096-4	chr7	44850981	44851181	+	809.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253920, intron 1 of 4)	intron (NM_001253920, intron 1 of 4)	1074.0	NM_001253920	67605.0	Mm.148007	NM_026270	ENSMUSG00000011096	Akt1s1	1110012J22Rik|AI227026|Lobe|Lobel|PRAS40	AKT1 substrate 1 (proline-rich)	protein-coding	4.23050298865784	3.77718843729508	3.73027932195334	3.6138747292211	3.72233405846024	4.05913379521529	3.87085518237823	3.78266764503224	0.0330882739031064	0.944793865088413	0.980155988443954
Merged-chr3-116206127-3	chr3	116206034	116206234	+	814.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47350.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	4.25578234997667	4.52524863964696	5.06014707055631	5.47845022419782	4.27392056440937	4.44054083775362	4.12965860008146	4.69821136069879	-1.12847492798589	0.0154759996152644	0.107218821940326
Merged-chr19-32108107-4	chr19	32107989	32108189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4949.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	6.39770289689372	6.26431242852961	7.04871022933413	6.48569250737366	6.01771576235451	6.32732035639142	6.11795544664213	6.12372881592585	-0.648193581699038	0.0135158543933028	0.0976001825972301
Merged-chr5-105599494-2	chr5	105599394	105599594	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	80023.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	3.59782354574974	4.14928353696357	3.88149140904134	3.7608341760115	3.99654065512082	4.05414084287506	4.21509865327533	3.65802289310859	0.369807610686531	0.432763594191349	0.722611204268057
Merged-chr7-49047340-6	chr7	49047230	49047430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	88257.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	5.30637962982897	4.50892660229438	5.93283481551098	5.61213091409858	5.04441201018614	5.06737282760293	5.12213216386591	5.52338894516392	-0.421078714000136	0.300344806028992	0.612422387893833
Merged-chr2-178019699-2	chr2	178019599	178019799	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45-int|LTR|ERVK	-3585.0	NM_001177400	626848.0	Mm.422604	NM_001177399	ENSMUSG00000074519	Zfp971	Etohi1	zinc finger protein 971	protein-coding	3.8182489371124	3.66784877463948	3.9141530666434	3.533815366936	3.60041065826726	3.66264261201134	4.17951897107929	3.60213690275208	0.152205562554918	0.75919127723619	0.905479988047768
Merged-chr5-92363343-3	chr5	92363234	92363434	+	975.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038116)	promoter-TSS (NR_038116)	-38.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	3.47670182214001	4.12083731678244	3.47713696513588	2.90966754135343	4.08218748663839	4.22938134422196	3.85788128687282	3.87296665958772	1.23681824230047	0.0392604298804457	0.199380574947221
Merged-chr18-82911723-4	chr18	82911609	82911809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183033, intron 1 of 5)	intron (NM_183033, intron 1 of 5)	830.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	6.86089799631775	7.15145324571774	6.66919110511789	6.43082764808793	7.1033335997867	7.14416867344882	7.17229072434145	6.89782086743861	0.4016765647368	0.081528786724092	0.309798073362916
Merged-chr14-25790830-3	chr14	25790726	25790926	+	954.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21970.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	4.29531249294611	4.3420278521603	4.74533323276689	4.56216786514212	4.45391701417734	4.1180331047288	4.03290676823418	4.15099778599152	-0.689142394796122	0.0956348519783226	0.338582100421041
Merged-chr7-118595389-4	chr7	118595294	118595494	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331204, intron 2 of 2)	intron (NM_001331204, intron 2 of 2)	-1903.0	NM_001105252	74424.0	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	5.03999491039344	5.24562840680277	5.25873710700631	5.70273435615749	5.99162445122651	5.6490930854409	5.35927832725943	5.77060584503749	0.614184988581655	0.0580451517981702	0.253015240161339
Merged-chr10-96338257-4	chr10	96338145	96338345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112038.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	7.09445441718629	7.25310696227449	7.17815328171171	7.30178862220694	7.06335695053537	7.24842236878788	7.53804886634463	7.30291714078374	0.105827549055523	0.58725688649951	0.819100437669827
Merged-chr15-95883815-4	chr15	95883717	95883917	+	918.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 2 of 19)	intron (NM_175344, intron 2 of 19)	-53745.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	4.17220030154497	4.5354441792212	4.49325890629658	4.45246711818459	4.37086312612842	4.44827597502704	4.65860655514689	4.49036963005123	0.153585112332014	0.680737526549054	0.868956507598538
Merged-chr5-146784833-3	chr5	146784742	146784942	+	788.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	MLT1E2|LTR|ERVL-MaLR	10114.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	3.43730758624355	3.26054190805013	3.5897675385711	3.05068361427686	3.46112134725599	3.4399278614879	3.4237607118965	3.20105833203488	0.173597048668229	0.752997473817701	0.902713603306311
Merged-chr15-63611343-4	chr15	63611240	63611440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131732.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	5.46253625694734	5.84000034125222	5.88674325578528	6.17865363083519	5.81330549131596	5.78839947153069	5.6638766023354	5.94821781579332	-0.130183676598427	0.642346681429245	0.849120718759996
Merged-chr17-50079031-4	chr17	50078945	50079145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 4 of 9)	intron (NM_181397, intron 4 of 9)	111452.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	5.42784315346853	5.42619794862045	5.23841654465816	5.85210524359881	5.48755426881099	5.84239392275668	5.54019355993749	5.42499878042483	0.0820566932154752	0.787358386357523	0.917510601855574
Merged-chr7-127164259-2	chr7	127164159	127164359	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-26436.0	NM_001037810	20737.0	Mm.283714	NM_009259	ENSMUSG00000051457	Spn	A630014B01Rik|Cd43|Galgp|Ly-48|Ly48	sialophorin	protein-coding	3.59719953147442	3.40469148369262	3.42628447670992	2.64886725487974	3.79055487027494	4.01137805957	3.47164915017449	3.64803160893665	1.32239693185775	0.0415080200176357	0.206334196301089
Merged-chr2-151494148-4	chr2	151494025	151494225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291074)	promoter-TSS (NM_001291074)	-57.0	NM_001291074	386649.0	Mm.419479	NM_198326	ENSMUSG00000027455	Nsfl1c	Munc-18c|Stxbp3a|p47	NSFL1 (p97) cofactor (p47)	protein-coding	7.78174358969494	7.67194728444627	7.70297468377813	7.75064903177208	7.84496241992624	7.94452894361572	7.71395241612731	7.84567957811351	0.144725484100083	0.372239019925084	0.676099595682082
Merged-chr19-32486541-4	chr19	32486465	32486665	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010799, intron 1 of 4)	CpG	796.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	3.7974694977932	4.13255654895771	3.95146114440056	4.01254209138776	3.94234955424951	3.8606718493773	3.72914586408999	4.12806376740673	-0.163882368944919	0.71105453332166	0.884240356833917
Merged-chr15-75120240-2	chr15	75120164	75120364	+	701.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-8293.0	NM_001099217	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	2.52223789829367	2.50784097458628	2.2972301855604	2.29993083261786	2.93984633358718	2.76194998748738	2.64436352177918	2.65288320360996	1.89480881064423	0.00654202196026305	0.0578740468691976
Merged-chr14-17659143-4	chr14	17659034	17659234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1826.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	5.81366317737982	5.58249411329764	5.59355494123261	5.6434415744307	5.64634079845663	5.53616575098903	5.7624866901768	5.61617640099207	-0.0236541925135594	0.927341614567891	0.973437269072031
Merged-chr16-31878754-4	chr16	31878646	31878846	+	803.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013900)	promoter-TSS (NM_013900)	-64.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	3.88394329936063	3.59761240233551	3.62525521607669	3.72675134639144	3.88561870331859	3.68325553311989	3.86769674988056	3.92817639878179	0.394597422834536	0.383541872009365	0.685433400480921
Merged-chr10-127211654-4	chr10	127211575	127211775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054097)	promoter-TSS (NM_054097)	-53.0	NM_001359280	117150.0	Mm.22682	NM_054097	ENSMUSG00000025417	Pip4k2c	Pip5k2c	phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	protein-coding	6.51323947984858	6.6188969881563	6.48078544513844	6.71030201899572	6.78063928482226	6.19251753181211	6.44767106948603	6.57431970538797	-0.0911296232202883	0.691877699163655	0.87467626526963
Merged-chr15-67176967-4	chr15	67176921	67177121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009177)	promoter-TSS (NM_009177)	-139.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	8.09964409520706	8.22707088961705	8.22589909601652	8.31165069430017	7.67238535590258	7.78687716679245	7.89569771858017	7.86243879176918	-0.541285926539895	0.000800449122894554	0.0112487992336646
Merged-chr16-34111418-4	chr16	34111315	34111515	+	932.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 34 of 59)	L1MB3|LINE|L1	-144377.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	4.47123176638277	4.98668439696454	4.59735025954638	4.21638365211476	4.86888353619804	4.91869582488095	4.49421236275818	3.93863503932712	0.0343199692743833	0.940745915413018	0.978654793543509
Merged-chr11-94160613-4	chr11	94160535	94160735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50819.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	6.4409791931222	6.53967484998957	5.99402601930888	6.09339350626425	5.96126521304638	6.19260245038228	5.71834981891518	5.84764629778578	-0.530149639530725	0.0455044529820167	0.218538658579513
Merged-chr5-92504411-4	chr5	92504325	92504525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	1232.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	7.19170872702141	7.19728367789231	7.15889156592137	7.30273858413571	7.43861354247036	7.20274352978743	7.18997025341997	7.07064788946654	0.0294828150806821	0.875615871365493	0.9532510799291
Merged-chr8-3353548-4	chr8	3353446	3353646	+	964.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033378, exon 1 of 11)	5' UTR (NM_001033378, exon 1 of 11)	131.0	NM_001033378	319493.0	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	4.61135618451036	4.63305743400231	5.19039505694915	4.91361504810497	4.67588235882617	4.6560907881115	5.02112054275493	4.77060335446834	-0.149302209571345	0.676793591569815	0.86728762362675
Merged-chr7-141309363-4	chr7	141309289	141309489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016874, intron 10 of 11)	PB1D10|SINE|Alu	17383.0	NM_007878	13491.0	Mm.41075	NM_007878	ENSMUSG00000025496	Drd4	AW125663|D4R|Drd-4	dopamine receptor D4	protein-coding	5.8092201106164	6.18266287506926	6.32562470333182	6.23893971255407	6.13112682142693	6.39029094521277	6.18331240940123	6.26710369451645	0.122370508686023	0.611270888834023	0.832251855180034
Merged-chr6-90515222-3	chr6	90515130	90515330	+	883.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35563.0	NM_001356412	107747.0	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	3.99975753653169	3.62299835146589	3.43401238320493	3.6015496003708	3.39189587401533	4.08202380049721	3.7567717511911	3.55498796408375	0.118590534832925	0.821426451313343	0.931676865606993
Merged-chr18-5802495-4	chr18	5802396	5802596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	209849.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	6.64633528730918	7.15980163391995	7.21340431128056	6.45690505289895	6.48714207175995	6.45777201422432	6.24645146058525	6.19004670095016	-0.788463047780204	0.00269431718454567	0.0293778803429498
Merged-chr5-42967099-4	chr5	42966985	42967185	+	900.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-266378.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	4.04214138448006	4.05548055021009	4.60534828378982	4.43129707736399	4.06910883355415	3.88379009928596	4.21156967243513	3.98891406270214	-0.672125164907944	0.124635563823378	0.391951700865256
Merged-chr12-111912515-4	chr12	111912412	111912612	+	939.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4457.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	4.8755593973452	4.87068243254797	4.84025148821782	4.97321755673664	5.05926835932868	4.64021172989958	4.92174543593315	4.72231070346916	-0.0763818757284454	0.818594425338666	0.930451480329292
Merged-chr14-70971607-3	chr14	70971551	70971751	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 6 of 7)	intron (NM_001302094, intron 6 of 7)	81544.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	4.73174982642423	5.08181118211557	5.43582375401308	5.29752449746418	3.42338196075064	3.90815035311853	3.75995963877669	3.97302028118214	-3.80364689999617	5.38603598629592e-13	6.06602302956578e-11
Merged-chr7-31174702-2	chr7	31174602	31174802	+	832.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	12344.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	2.96893758267007	3.06842441456711	3.19534915746996	2.82723595206823	2.7628341112137	3.01510904149544	2.89629657961024	3.02804459211507	-0.386394899123276	0.527635479706741	0.784498766534655
Merged-chr11-117654141-1	chr11	117654041	117654241	+	1000.0	f0_balb.idr	promoter-TSS (NM_198022)	promoter-TSS (NM_198022)	-148.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	4.87931107355788	4.89303822522146	4.4260623441035	4.10264756144288	4.37755527006089	4.88179427590399	4.36043492223874	4.55257575996961	-0.116106435257522	0.785899350133167	0.916695833425573
Merged-chr8-46305890-2	chr8	46305790	46305990	+	894.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11219.0	NM_173789	234219.0	Mm.145631	NM_173789	ENSMUSG00000047171	Helt	A830086M02|Hesl|Heslike|Mgn|megane	helt bHLH transcription factor	protein-coding	3.38282285726301	3.25675323691663	2.94181574665239	3.2168300594273	3.26657640833465	3.32404700575274	3.31555009005263	3.57885178797706	0.595183887203137	0.280513218969599	0.592534956020925
Merged-chr7-80786939-4	chr7	80786832	80787032	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	16399.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	5.23457739248924	5.6689988997864	4.92689743219594	5.17464667778117	5.11181889168892	5.10482140137207	4.97819987623505	5.2318466930756	-0.317950753031791	0.331637749049444	0.642732685479085
Merged-chr6-120836168-4	chr6	120836070	120836270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153516)	promoter-TSS (NM_153516)	-60.0	NM_153516	94044.0	Mm.27990	NM_153516	ENSMUSG00000009112	Bcl2l13	BCL-RAMBO|E430016C20Rik|Mil-1|Mil1	BCL2-like 13 (apoptosis facilitator)	protein-coding	7.66826894646458	7.76885448092174	7.44969810688123	7.56409207363415	7.96132847780618	7.78677992313825	7.98056416127816	7.53155036515353	0.27982753659541	0.133000871673575	0.406105758986762
Merged-chr16-11006915-4	chr16	11006827	11007027	+	908.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1971.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	4.0356871832812	4.24525492735209	4.39890679603968	4.23352279051587	4.05777524316603	4.35696253127585	4.16634654063093	4.35602311976236	-0.0040707302660387	0.99190223889594	0.996888150210724
Merged-chr1-34011139-4	chr1	34011037	34011237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133833)	promoter-TSS (NM_133833)	-688.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	6.22143484035353	6.46026512046761	6.05580601038685	6.37328995170555	6.17338698660412	6.16506559966809	6.60080917981202	6.07355190235332	-0.0394820526353339	0.872995303883152	0.952393788567689
Merged-chr4-129121187-3	chr4	129121112	129121312	+	907.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010471)	promoter-TSS (NM_010471)	91.0	NM_010471	15444.0	Mm.384452	NM_010471	ENSMUSG00000028785	Hpca	-	hippocalcin	protein-coding	3.10072959270094	3.04200945209889	3.03943999208605	2.55390697052872	3.07683047253497	3.27490624830331	3.02828336711459	3.37004435142109	1.00002564683099	0.116296375770795	0.377295338695963
Merged-chr7-80500348-4	chr7	80500236	80500436	+	958.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042527, intron 7 of 21)	intron (NM_001042527, intron 7 of 21)	34662.0	NM_007550	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	5.25218780854883	5.39545713851842	5.39637319003265	5.29756799057376	5.29136351218243	4.91932094683068	4.92234992956919	5.24945460449122	-0.398714790850675	0.190974385484364	0.490311892807621
Merged-chr14-16249353-4	chr14	16249291	16249491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362433)	promoter-TSS (NM_001362433)	77.0	NM_001362432	59007.0	Mm.258381	NM_021504	ENSMUSG00000021785	Ngly1	1110002C09Rik|PNGase|Png1	N-glycanase 1	protein-coding	7.8177331696541	8.06893766491564	8.60479624115081	8.02723975160104	7.90276003974267	8.05821988238469	8.04236890373747	7.74084002921509	-0.283104731564677	0.177350446598966	0.472719812791034
Merged-chr11-115291073-3	chr11	115290945	115291145	+	627.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178035, intron 2 of 5)	intron (NM_178035, intron 2 of 5)	6501.0	NM_178035	328035.0	Mm.21995	NM_178035	ENSMUSG00000044788	Fads6	BC044804	fatty acid desaturase domain family, member 6	protein-coding	2.93537502534531	2.66816120882124	2.74577753092145	2.88182470069564	2.63589761991705	2.92000170689373	3.0356275664839	2.99168409771966	0.383403254837757	0.546985585345143	0.796650167361309
Merged-chr10-34231905-1	chr10	34231805	34232005	+	560.0	f0_balb.idr	Intergenic	Intergenic	-24354.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	3.54783085467613	3.48349593949168	3.08510433375075	2.65435346581019	3.59912755073246	3.3323727914223	3.32355812164866	3.33509162475784	0.540429476946131	0.409806326251595	0.70525942551561
Merged-chr4-120033155-4	chr4	120033046	120033246	+	919.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	CpG	-128060.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	3.6712687228823	4.10326825957596	3.72819703505956	3.62617220048234	4.14429453952373	3.90264007697808	3.5997420694688	3.97621295042153	0.379237387026532	0.429720470327691	0.720577491459072
Merged-chr14-54653702-4	chr14	54653589	54653789	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085472)	promoter-TSS (NM_001085472)	-4.0	NM_019567	56215.0	Mm.297078	NM_019567	ENSMUSG00000022185	Acin1	2610036I19Rik|2610510L13Rik|Acinus|Acn|C79325|acinusL|acinusS|mKIAA0670	apoptotic chromatin condensation inducer 1	protein-coding	4.91802182148188	4.76806406694471	5.02412284904298	5.08902432352942	5.08509421641138	4.98053253098672	4.99978459980287	5.23657663147762	0.222563661556105	0.480556409685957	0.75600177940663
Merged-chr17-56716995-4	chr17	56716913	56717113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178926)	promoter-TSS (NM_178926)	-92.0	NM_178926	106639.0	Mm.37290	NM_178926	ENSMUSG00000054723	Vmac	AI662250	vimentin-type intermediate filament associated coiled-coil protein	protein-coding	7.54228000663407	7.66071616187782	7.14830738049901	7.27642542801722	8.03504193862313	7.93900736307378	7.56875884868607	7.87380045395757	0.589501981319451	0.00342761703833629	0.0354407834357552
Merged-chr10-93160668-4	chr10	93160563	93160763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146239)	promoter-TSS (NM_146239)	-213.0	NM_146239	237459.0	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	7.02636165568694	7.40616237336683	6.74367488237984	6.74349042916703	7.47377862879062	7.50771647467839	7.23326781380836	7.32589105555374	0.524025348357586	0.0189897290949947	0.123586900178534
Merged-chr11-8624195-4	chr11	8624104	8624304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	RLTR20A4|LTR|ERVK	40331.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.02537389042075	4.93417456511412	5.61878449929529	4.99765555563437	5.31651144298024	5.47202686887285	5.41372977849419	5.68365335163878	0.561169010278216	0.0805214643271676	0.30777775262289
Merged-chr4-16159747-4	chr4	16159657	16159857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138102, intron 1 of 11)	intron (NR_138102, intron 1 of 11)	3886.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	7.14320414037072	7.08053166656016	6.87532219333142	7.59357662944508	7.05428342576968	7.13582579629485	7.44848540636566	7.00572489456132	-0.06257653145442	0.788231909810884	0.918059942123998
Merged-chr18-36513013-4	chr18	36512900	36513100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010415, intron 2 of 5)	intron (NM_010415, intron 2 of 5)	2805.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	6.9781880043303	7.02357825162503	7.42991794321295	7.54550587687305	7.21114708383274	7.11678099557173	7.10465261868547	7.14707253021418	-0.180095444886163	0.397257449077894	0.695674555132496
Merged-chr10-41826715-4	chr10	41826609	41826809	+	829.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	16135.0	NM_001162908	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	4.33491252934584	4.22294323311271	4.41456303089811	4.10256909979786	4.1371147066174	3.90621736636407	4.14306611167385	4.29144538769965	-0.33901237538466	0.410213557504693	0.705620850885126
Merged-chr19-12573434-4	chr19	12573335	12573535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346545)	promoter-TSS (NM_001346545)	-75.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	7.89651109916299	8.07969868901682	7.65365258824488	7.79876876983505	7.77110650573364	7.87342836889253	8.06338480975713	7.71592149057605	-0.00700954137266319	0.969268975613057	0.988899985883694
Merged-chr4-151996313-4	chr4	151996214	151996414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172705)	promoter-TSS (NM_172705)	-135.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	8.4887091111723	8.73699458984092	8.28346328112214	8.50275995647339	8.5899404225949	8.7218793506048	8.80534975935112	8.56697408373956	0.198640411830072	0.229914727929296	0.539096658041788
Merged-chr4-47287679-4	chr4	47287580	47287780	+	937.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 22 of 39)	intron (NM_009928, intron 22 of 39)	-65542.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	3.94445192149406	4.73875449647324	4.56207220782898	3.95810656867861	4.43165371213438	4.73336525550426	4.6814434218069	3.88141338891496	0.279898382839791	0.566741208980592	0.807981102690519
Merged-chr10-61069383-3	chr10	61069267	61069467	+	839.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19964.0	NM_025273	13180.0	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	3.07030248678495	2.97105168311785	3.13017192064161	3.19242376416725	2.93581742561425	2.98128416534671	3.27966384872039	3.23960972707171	0.0649028993334154	0.910850826977206	0.966869748913735
Merged-chr17-22081226-3	chr17	22081129	22081329	+	977.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	84748.0	NM_177596	210853.0	Mm.441622	NM_177596	ENSMUSG00000063383	Zfp947	6720451E15|EG210853|Gm4769	zinc finger protein 947	protein-coding	3.90491217868618	3.69551086340756	4.03649456808012	3.7061684717955	5.41306146733714	5.44825423339045	5.24712230744035	5.05437808531651	3.27254061819679	2.47363072820672e-17	5.79019709785323e-15
Merged-chr18-83740694-3	chr18	83740603	83740803	+	943.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	345859.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	3.91378962972232	3.95247658347168	4.59145364595599	4.79964646379894	3.72680570708444	3.98160423650499	3.95241188614437	4.1173512778492	-1.11320495105405	0.023874013677911	0.14391331466633
Merged-chr8-83090663-2	chr8	83090590	83090790	+	893.083374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177378, exon 7 of 7)	3' UTR (NM_177378, exon 7 of 7)	-74662.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	3.28745349001919	3.50730316105525	3.23072667538932	3.01356050365725	3.47417439794786	3.21925681253439	3.2186186770612	2.89973527532151	-0.157766550935417	0.793806126029276	0.92022175040272
Merged-chr8-92998816-4	chr8	92998711	92998911	+	792.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009209, exon 14 of 14)	3' UTR (NM_009209, exon 14 of 14)	37764.0	NM_009209	20538.0	Mm.57040	NM_009209	ENSMUSG00000055368	Slc6a2	NE-T|NET|Slc6a5	solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2	protein-coding	4.00572274238623	4.26778042706507	4.05591241929245	4.07382101317151	3.93163193648777	4.4058286018167	3.98964838734518	4.10120424778925	0.0179474742704462	0.96616044384786	0.988026381474581
Merged-chr3-75299666-4	chr3	75299575	75299775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-29597.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	6.81904850992724	6.96167691789988	6.6881989953094	6.72093658238618	7.10280460405322	6.91066710042573	7.06965061464423	6.40822124316741	0.151177269227117	0.510361844749802	0.774681535183884
Merged-chr11-100624026-4	chr11	100623910	100624110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028024, intron 1 of 3)	intron (NM_028024, intron 1 of 3)	1055.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	4.91282025832269	5.27187649455739	5.19018074436361	5.23426035528117	5.66517100688457	5.50502475154088	5.97616252471718	6.33079270562843	1.25466870508126	6.80081090627557e-05	0.00146644931686698
Merged-chr10-17723545-1	chr10	17723445	17723645	+	1000.0	f0_c57.idr	intron (NM_010828, intron 1 of 1)	CpG	317.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	6.88040410710671	7.68061621039729	7.00347546373653	6.51774037328987	7.59197761923185	7.86080796323727	6.86062434140737	6.75765628189407	0.347514877576207	0.473505284983718	0.751223284962802
Merged-chr9-111553453-3	chr9	111553362	111553562	+	948.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114381.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	4.03800502299841	3.88558142921153	3.97617274411801	4.10568056018215	5.31610557525586	4.91657424538754	5.06248718949384	5.0289804326167	2.35671496924175	1.64337370774817e-09	1.0145160203279e-07
Merged-chr7-25726158-4	chr7	25726083	25726283	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360789, exon 12 of 15)	exon (NM_001360789, exon 12 of 15)	-7130.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	5.9449535009942	6.18260028221689	5.85727577943687	5.80263460272549	5.60248570456925	6.09846831038499	5.60302858202223	5.35353435540025	-0.429965854178834	0.133239842236225	0.406546145412697
Merged-chr4-59864086-4	chr4	59863994	59864194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 2 of 8)	intron (NM_172468, intron 2 of 8)	50962.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	6.89273279452962	6.66810517188852	7.05610684772223	7.22230801121802	6.6288433554028	6.63084608139996	6.99697724053974	7.09704702047647	-0.185854533816012	0.423708278972706	0.715570066410379
Merged-chr12-110682961-3	chr12	110682833	110683033	+	835.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025488)	promoter-TSS (NM_025488)	-314.0	NM_025488	66323.0	Mm.273316	NM_025488	ENSMUSG00000056508	1700001K19Rik	-	RIKEN cDNA 1700001K19 gene	protein-coding	2.96950696762687	3.06708709299486	3.02916681495327	3.16861645842579	2.72844433876337	2.8792035105648	2.8981609288825	3.02757945709518	-0.810730730947888	0.183793688452818	0.480982791660839
Merged-chr5-96803264-4	chr5	96803160	96803360	+	954.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013470, intron 2 of 12)	intron (NM_013470, intron 2 of 12)	9875.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	4.77508489282996	5.39412639822534	5.41618338459891	5.01966393124343	4.95043749685302	4.91341668372107	5.2573627359911	4.59563887300911	-0.427819011102989	0.234024971213808	0.543723238550186
Merged-chr6-108834480-4	chr6	108834379	108834579	+	846.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138677, intron 1 of 11)	intron (NM_138677, intron 1 of 11)	5838.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	4.23794126198152	4.51353510930165	4.0003154422925	4.16675485285821	4.14948611844383	4.0134653568366	4.26190908377036	4.04926066064122	-0.299542817212556	0.473002872256045	0.751004143563305
Merged-chr12-36360262-4	chr12	36360161	36360361	+	950.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-21189.0	NM_001289504	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	4.27499410635681	4.16211147828657	4.96245669691742	5.34102727364663	5.10380303854392	4.66533958681655	5.09323448691583	5.02394600796075	0.375239790927434	0.414422802853951	0.709044594374843
Merged-chr13-34044137-4	chr13	34044032	34044232	+	953.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026512, intron 1 of 6)	MTD|LTR|ERVL-MaLR	6491.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	5.29766472610413	5.19124003731935	5.12730113826189	5.21120397591527	4.95003515505131	4.78586197351301	4.49075997403357	4.64739257301612	-0.924883633889812	0.00561118529248259	0.0517355644991733
Merged-chr11-106461356-4	chr11	106461246	106461446	+	999.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 1 of 21)	(CA)n|Simple_repeat|Simple_repeat	26450.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	5.06305204571352	5.55620845312662	4.68575121261815	5.29118679165369	5.45044961387608	5.41059419592528	5.24041985224052	5.76986479182033	0.50474553724135	0.138846102968065	0.414381792154761
Merged-chr2-59240174-4	chr2	59240063	59240263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	79313.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	8.14936274984937	8.16731807429086	8.67022278450554	8.87009542441291	8.25227807803133	7.81228514123072	8.27714722147542	8.32716843841681	-0.411005011256349	0.0633634341126654	0.267157083088817
Merged-chr15-98093418-4	chr15	98093318	98093518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_144851, exon 1 of 18)	5' UTR (NM_144851, exon 1 of 18)	151.0	NM_144851	223870.0	Mm.384023	NM_144851	ENSMUSG00000033075	Senp1	2310046A20Rik|D15Ertd528e|E330036L07Rik|suPr-2	SUMO1/sentrin specific peptidase 1	protein-coding	6.49125261196061	6.46059020694141	6.02680038264518	6.07359674758559	6.47997975206958	6.56679193290977	6.47520055411487	6.43816282717791	0.326392544130908	0.162217696374575	0.451352255892653
Merged-chr1-85960463-3	chr1	85960351	85960551	+	861.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033290, intron 1 of 1)	MIRc|SINE|MIR	604.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	3.61259738761667	3.52358808594271	3.31063360109517	3.23200188343724	3.65027484657372	3.83793529788073	3.65065454383802	3.98337291479691	1.16564134665527	0.0184783613336332	0.121441664951291
Merged-chr9-45954488-5	chr9	45954368	45954568	+	907.3666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152206, exon 1 of 1)	non-coding (NR_152206, exon 1 of 1)	482.0	NR_152206	100101457.0	Mm.397964	NR_152206	ENSMUSG00000111329	A830035O19Rik	-	RIKEN cDNA A830035O19 gene	ncRNA	4.18749685651458	3.93360215854772	4.09752214606976	3.94565732762583	4.03090466509564	4.26908184787173	4.29276083887557	3.99768956851317	0.296432887048362	0.474557889597629	0.751776183889563
Merged-chr12-28649599-4	chr12	28649494	28649694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104608)	promoter-TSS (NR_104608)	-8.0	NR_104608	19819.0	Mm.10152	NM_011275	ENSMUSG00000020630	Rnaseh1	-	ribonuclease H1	protein-coding	6.87306821535801	6.75332862739945	6.50091365615122	6.84956360999285	7.06931235979097	7.12870631390497	6.85273798772325	6.99718996873882	0.358977048402843	0.0771126184640212	0.300246106320801
Merged-chr8-13163976-4	chr8	13163887	13164087	+	767.895813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010684, intron 1 of 8)	MTC|LTR|ERVL-MaLR	4826.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	3.73672031853798	3.5006665313688	3.73724151832602	3.6249539517192	3.91198069385152	4.00912409516942	3.9163721570413	3.78709830817473	0.760465568577048	0.0891168172579318	0.325695519388084
Merged-chr9-83564409-3	chr9	83564307	83564507	+	954.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	16069.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	4.15008826768887	4.50213048889075	4.19554414549389	4.50422367475817	3.57258497429249	4.0781474634817	3.88446279847047	3.95183623754646	-1.30002329354645	0.00399923875277952	0.0400649986184509
Merged-chr11-72466473-4	chr11	72466374	72466574	+	890.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153060, intron 2 of 12)	intron (NM_153060, intron 2 of 12)	8553.0	NM_001276383	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	4.2229046228854	4.85479587261113	4.06906465725313	4.2995437462827	4.25885488174531	4.44631911644125	4.61335910243826	4.2209932805215	-0.0191535057424774	0.964303425921941	0.987309283922085
Merged-chr13-49308476-4	chr13	49308342	49308542	+	907.4874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	766.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	4.59267058383772	4.20901136926092	4.25405277207207	4.28515912364521	4.23716367665574	4.68761811817352	4.53407867265628	4.59036293758594	0.405799647355667	0.29416236544725	0.606522696834359
Merged-chr1-144318513-4	chr1	144318404	144318604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69400.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	6.67163770875605	6.26694269406523	6.85572334483889	7.01751933313322	6.8412522329081	6.52451067006344	6.4951417141207	6.82441469768642	-0.0798094207417447	0.747423157045078	0.900560236507876
Merged-chr12-37242759-4	chr12	37242680	37242880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178767, intron 1 of 12)	intron (NM_178767, intron 1 of 12)	1141.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	6.69230033657617	6.58733777235433	6.20623820253018	6.83724608926103	7.07190476231159	6.54952129605502	7.11617560656687	6.57930257768267	0.356114653068502	0.158926938951928	0.446094511738734
Merged-chr16-21996849-3	chr16	21996744	21996944	+	736.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1302.0	NM_001289581	239759.0	Mm.33192	NM_153404	ENSMUSG00000044626	Liph	C130037N08Rik|D16Wsu119e|H06|Lpdlr|P3|PLA1B|lpd1|lpd2|mPA-PLA1	lipase, member H	protein-coding	3.0832475461832	3.26362057792957	3.08362255817968	2.97884844496618	3.1165204909305	3.19322882648842	3.07277872822489	3.14129140619229	0.121018903370871	0.828466214319444	0.934169961374777
Merged-chr13-103919423-4	chr13	103919309	103919509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	1177.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	5.49005165971226	5.87132050102299	5.90561391015012	5.72867556028365	5.96470250686498	5.66950474608504	5.93968502027062	5.94479646990259	0.21447521244445	0.405939168885805	0.702478462076309
Merged-chr1-105199532-3	chr1	105199425	105199625	+	870.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-156482.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	3.45674256861547	3.11178461455395	3.45719373974938	3.48535777515278	3.49753887331346	3.74100254313029	3.79605001443109	3.76604413304522	0.991462700481844	0.0536105316146307	0.241668399607207
Merged-chr8-70523167-4	chr8	70523054	70523254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029366)	promoter-TSS (NM_029366)	26.0	NM_029366	75620.0	Mm.482129	NM_029366	ENSMUSG00000055553	Kxd1	0610030B01Rik|2810422J05Rik|C78305	KxDL motif containing 1	protein-coding	7.50397184460558	7.69790236309162	6.76313378071543	7.13258037166045	7.50794363104817	7.39382440698826	7.21338246607484	7.2336365116645	0.0318702631609992	0.894285706321826	0.960481560907683
Merged-chr16-33185051-4	chr16	33184950	33185150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176840)	promoter-TSS (NM_176840)	-21.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	7.33949091004406	7.21869657618871	6.88388119118982	7.08301279588423	6.89687733360833	7.34963703730561	7.18091596226182	7.22279476969758	0.0330291717227383	0.873336314131191	0.952532224506889
Merged-chr17-70746928-4	chr17	70746841	70747041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	Charlie9|DNA|hAT-Charlie	99836.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	6.45675461261311	6.19211072370284	5.94643573700691	6.09526415616763	5.6053536241629	6.32837163885517	5.58511094358736	5.5798786416982	-0.591236030631794	0.0445781975148107	0.215544563610265
Merged-chr16-57504892-4	chr16	57504796	57504996	+	974.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-44346.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	5.74716536230711	5.7163832437121	5.94346075249998	6.01365898227064	5.38814757334865	5.44799546338819	5.20847515185801	5.33155927788889	-0.891533649825961	0.00106795027008207	0.0141846673398342
Merged-chr4-128621526-4	chr4	128621448	128621648	+	803.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2929.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	4.34917092077708	4.55015216318145	4.1043215411732	4.73868776720561	4.33462141378593	4.33490145719455	4.60782672233937	4.39108606267258	-0.129702119067002	0.7482717922467	0.900930235736524
Merged-chr9-44767809-4	chr9	44767688	44767888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145985)	promoter-TSS (NM_145985)	20.0	NM_145985	213827.0	Mm.371682	NM_145985	ENSMUSG00000032096	Arcn1	4632432M07Rik|nur17	archain 1	protein-coding	6.14260786672976	6.07901551308276	6.20296981980796	5.79480994857262	6.11078600719082	6.52288138000801	6.0290702502209	6.37789568729973	0.338779337677249	0.181174833128745	0.477671882256885
Merged-chr5-144772230-4	chr5	144772121	144772321	+	941.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081362, intron 3 of 70)	intron (NM_001081362, intron 3 of 70)	3429.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	4.60989525940982	4.69634631979664	4.53001078568723	4.6082447632154	4.52572345070118	4.57396302146644	4.70007953573709	4.44148013634553	-0.113893036090216	0.745018933569407	0.899431814827356
Merged-chr15-102350805-4	chr15	102350705	102350905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153416)	promoter-TSS (NM_153416)	-22.0	NR_155425	102640093.0	Mm.385825	NR_155425	ENSMUSG00000116402	Gm36246	-	predicted gene, 36246	ncRNA	6.85839486051099	7.07878200005662	6.64843669797126	6.72511738593126	7.01384691187698	7.20466644826914	6.98063485092774	7.22457194166203	0.376648080056041	0.0657687900266751	0.273029085810609
Merged-chr8-46070328-3	chr8	46070227	46070427	+	660.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207213, intron 5 of 17)	B1_Mus2|SINE|Alu	53819.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	2.76586138928863	2.90017287896202	3.387518824611	3.35308776134475	3.17517295947164	3.22401512328117	3.1020614975779	3.33519523604496	0.285042454777505	0.656758396571365	0.856884619241167
Merged-chr1-151614783-4	chr1	151614736	151614936	+	810.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	43463.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	3.71437968206798	3.47887139359703	3.36554441842883	3.5113634965057	3.97375600039547	3.66877682378799	3.84246377185865	3.81092008671331	0.952047729015519	0.0436853215523617	0.212773881399723
Merged-chr17-56153914-4	chr17	56153806	56154006	+	971.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8585.0	NM_025566	66443.0	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	5.16567390556022	4.84213216705274	5.16655311299268	5.26874043056691	5.22774698553049	4.72073337047592	5.23057977382158	5.19375417958457	-0.0194005042513059	0.952781919491986	0.983276598943455
Merged-chr15-88862421-1	chr15	88862321	88862521	+	1000.0	f0_c57.idr	5' UTR (NM_145478, exon 1 of 6)	5' UTR (NM_145478, exon 1 of 6)	227.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	7.37062758555316	7.75138793884018	7.20550845834714	7.3238994472085	7.87207359053437	7.93106317901352	7.49086070113776	7.60270811559249	0.407839192083618	0.0478076348159485	0.22555177560578
Merged-chr17-37022856-4	chr17	37022796	37022996	+	810.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010814, intron 1 of 7)	ID4_|SINE|ID	502.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	4.11889359101762	4.11173890506938	3.79835206329567	4.10851091702349	4.07474129326254	4.68991463627349	4.39393565216523	3.73468483675459	0.557039020409836	0.238098077889321	0.548429974955795
Merged-chr17-8051376-4	chr17	8051263	8051463	+	802.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033442, intron 2 of 3).2	intron (NM_001033442, intron 2 of 3).2	49865.0	NM_001033442	381059.0	Mm.490353	NM_001033442	ENSMUSG00000095720	Gm1604b	Gm1604	predicted gene 1604b	protein-coding	3.97398656936636	3.80729605585062	3.6923041530095	3.95748507797387	3.61118285889368	3.51234073878521	3.5111988452988	3.6365252826178	-0.919902589409478	0.0537445477503626	0.241992473358446
Merged-chr10-111996609-4	chr10	111996512	111996712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028608, intron 1 of 5)	intron (NM_028608, intron 1 of 5)	652.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	5.99675181605771	5.87767261808604	5.92637819467339	6.21682818184142	6.58063154292037	6.60064458325928	6.47252370628771	6.18640069124853	0.671615251116205	0.0054965093742974	0.0509421928063951
Merged-chr17-8214140-1	chr17	8214040	8214240	+	593.0	f0_balb.idr	Intergenic	Intergenic	-21903.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	3.10819367506459	3.09893026596686	3.32182820269856	3.05877883950766	3.08445371287509	2.88631937895187	2.91269408374811	3.10697081443408	-0.577941180027949	0.325732019560376	0.637273361010609
Merged-chr18-60747942-7	chr18	60747823	60748023	+	925.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	497.0	NM_001348100	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	3.56344300745553	3.91408631510408	4.17076537092192	3.87081492177603	4.1995218119145	4.38430287592636	4.01341962798358	4.40856941645315	0.940210709341261	0.0339762533676782	0.181916333568374
Merged-chr19-9899598-4	chr19	9899497	9899697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016692)	promoter-TSS (NM_016692)	-64.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	8.19969734371456	8.20708691741036	8.18950127557671	7.84728752584517	7.9192924401712	7.82422821607616	7.89494470910931	7.72763594793805	-0.342225333514649	0.0505319485171816	0.233168183715658
Merged-chr15-4731077-3	chr15	4730971	4731171	+	814.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016704, intron 1 of 15)	Lx7|LINE|L1	3861.0	NM_016704	12274.0	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	4.17117713712746	3.53331360691498	3.61000045182137	3.3870365315672	3.80256903576523	3.7876940224801	3.99212107601668	3.77293194816026	0.412074206350594	0.418027104059769	0.711628236434313
Merged-chr2-165819701-4	chr2	165819598	165819798	+	944.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027230, intron 13 of 23)	intron (NM_027230, intron 13 of 23)	38475.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	4.60729744822202	4.6534691352109	4.42753946844889	4.30111587793167	5.17329921771912	5.04575556060608	4.54427016767829	5.06080101231108	1.02363326445263	0.00455003257823182	0.0442817049830863
Merged-chr15-97247348-4	chr15	97247201	97247401	+	915.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164563)	promoter-TSS (NM_001164563)	-14.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	4.29630865186533	4.19090732100272	3.8501376519311	4.42734963937829	4.23167008489694	4.33598586967693	4.14645669043102	4.11457889566244	-0.0341868406670488	0.935408886646974	0.976559562935705
Merged-chr2-73572610-4	chr2	73572511	73572711	+	882.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007389, intron 4 of 8)	intron (NM_007389, intron 4 of 8)	7727.0	NM_007389	11435.0	Mm.4583	NM_007389	ENSMUSG00000027107	Chrna1	AI385656|AI608266|Achr-1|Acra	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	protein-coding	3.72163795023919	3.91966875380753	4.13035536202169	4.02109316110036	3.90143660372593	3.90116453421646	4.19538824295004	4.25233721246947	0.289961357945517	0.50912535313732	0.773899579952911
Merged-chr18-60805889-4	chr18	60805813	60806013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042605, intron 1 of 8)	intron (NM_001042605, intron 1 of 8)	2064.0	NM_010545	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	7.47059616328402	7.71955705018296	7.3095084923465	7.50342089753033	7.62587693591475	7.65853321775174	7.39641442175255	7.56721734759332	0.0726411253829619	0.691402088349896	0.874499062596085
Merged-chr4-103119364-4	chr4	103119268	103119468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039081)	promoter-TSS (NM_001039081)	-22.0	NM_001039081	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	6.20269796474233	6.40548000066376	6.39601254130021	6.08701401958201	6.61965845531742	6.7536545608304	6.81902045019268	6.26009506541869	0.530316650635397	0.0245042765611619	0.1463860597018
Merged-chr7-30000797-3	chr7	30000684	30000884	+	922.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167873, intron 6 of 9)	intron (NM_001167873, intron 6 of 9)	16829.0	NM_001167872	243905.0	Mm.322432	NM_001033355	ENSMUSG00000074221	Zfp568	C80731|Gm1691|Znf568|chato	zinc finger protein 568	protein-coding	4.02711347948323	4.41806084328984	4.07557089253988	4.59521962071654	3.9334514116678	3.81690168385439	3.80193270309513	3.81442770097703	-1.26215805638672	0.00571754372173719	0.0524653682636671
Merged-chr3-96305151-4	chr3	96305037	96305237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	-11168.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	5.15875672868752	5.33124264800691	5.89943673078377	5.72348670933515	5.13698776099672	4.7490767354058	5.63818163336997	5.25591104517442	-0.585281582490493	0.0999747191950289	0.346839232713504
Merged-chr17-31058936-4	chr17	31058843	31059043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 1 of 14)	intron (NM_009593, intron 1 of 14)	1249.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	7.0316271238344	7.39628721199492	7.44082975850219	7.40931502995686	6.81877135721365	6.60573729980978	6.81175241919493	7.02788942141558	-0.699739108625201	0.000663999456890642	0.00967379277925506
Merged-chr14-74704023-4	chr14	74703888	74704088	+	947.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172812, intron 2 of 2)	intron (NM_172812, intron 2 of 2)	-28309.0	NM_001285423	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	4.61338295368737	4.90060867977225	5.10482973588956	5.2550653254462	4.6259709426231	5.11166715604318	5.253438832571	4.96937654462326	-0.00388447745481227	0.991467845767652	0.996745793587504
Merged-chr12-91734814-4	chr12	91734711	91734911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 3 of 6)	intron (NM_175367, intron 3 of 6)	51625.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	7.11245010335441	7.14598369034473	7.11368676796343	7.42566998137194	6.93506203683467	6.73473788323537	7.22950600219536	6.76535509198759	-0.389630146336613	0.0664211088745296	0.274700389356906
Merged-chr9-25483419-5	chr9	25483209	25483409	+	900.1533199999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026189, exon 2 of 8)	exon (NM_026189, exon 2 of 8)	1712.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	4.0848755364684	3.65615983132575	3.99505498401355	3.93922023347756	3.93849884048276	3.96679890562603	3.9305826252619	3.99263828611986	0.0847604094491213	0.845680379616716	0.941557049643182
Merged-chr11-106388099-4	chr11	106388001	106388201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5320.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	5.63836344828481	5.83379790285252	5.8307820643473	5.31330896518331	5.47271057114196	5.56027995731982	5.63623668511367	5.78146884893531	-0.0693345602788889	0.809623219125254	0.926542616430318
Merged-chr6-120198150-3	chr6	120198069	120198269	+	854.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347432, intron 2 of 3)	intron (NM_001347432, intron 2 of 3)	4346.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	3.94191930418453	3.69533541447963	3.35753513665007	3.43595865093434	3.68929396492052	3.87933616326341	3.69317637077388	3.59966320639897	0.300439305686904	0.548305763717153	0.79734929527087
Merged-chr14-51069818-2	chr14	51069718	51069918	+	942.958374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_207558)	TTS (NM_207558)	1624.0	NM_207558	404319.0	Mm.377276	NM_207558	ENSMUSG00000035932	Olfr750	GA_x5J8B7W5WBF-6267395-6266441|GA_x6K02T2PMLR-6808276-6807281|MOR103-18	olfactory receptor 750	protein-coding	3.48618528603553	3.41017544597999	3.30992493701455	3.36385289808721	3.5010033405651	3.75896270925033	3.57796155829729	3.59077733848982	0.715131145863624	0.14313462380313	0.421297445881944
Merged-chr19-28777078-4	chr19	28776969	28777169	+	880.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58097.0	NM_009199	20510.0	Mm.246670	NM_009199	ENSMUSG00000024935	Slc1a1	D130048G10Rik|EAAC1|EAAC2|EAAT3|MEAAC1	solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	protein-coding	4.54460934395729	4.15339023345072	5.03263975819663	4.60897478494943	4.21008596134747	4.19921870329701	4.48405498246778	4.54236051667308	-0.574448654629061	0.170884136551144	0.464014859975631
Merged-chr17-34931941-3	chr17	34931771	34931971	+	976.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010893, intron 1 of 5)	intron (NM_010893, intron 1 of 5)	618.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	4.55204711399518	4.42721643325764	4.38578949472958	4.54375397920872	4.38896301077119	4.55899402927494	4.60671494404643	4.42680697090237	0.0203961905703442	0.955024957384423	0.983972229017382
Merged-chr19-10510998-4	chr19	10510882	10511082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025333, intron 3 of 3)	MLT1E2|LTR|ERVL-MaLR	14227.0	NM_025333	66072.0	Mm.180063	NM_025333	ENSMUSG00000024668	Sdhaf2	0610038F07Rik|AA407634|AW049997	succinate dehydrogenase complex assembly factor 2	protein-coding	6.47215183715577	5.99166266593408	6.58741284461631	6.68729100573968	6.51484172196592	6.36579762140675	6.6720263058443	6.8482397729995	0.207485327702484	0.4103841039229	0.705794818013582
Merged-chr6-54048982-4	chr6	54048885	54049085	+	983.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	9053.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	5.65566415180967	5.6194101246435	5.00198136955342	5.69933317968523	5.60088117525186	5.2981435858013	5.60350323371712	5.52458495914757	-0.0314981046209885	0.917638905294545	0.969707968584711
Merged-chr17-56304194-4	chr17	56304110	56304310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111080)	promoter-TSS (NM_001111080)	-103.0	NM_001111078	18140.0	Mm.42196	NM_010931	ENSMUSG00000001228	Uhrf1	AL022808|ICBP90|Np95|RNF106	ubiquitin-like, containing PHD and RING finger domains, 1	protein-coding	6.93530323259719	6.78998836516232	6.31658240755219	6.60311951696696	6.92560315067569	7.03499280381841	7.02046776611372	6.63589496887015	0.331558374859339	0.143622769563025	0.422016393441485
Merged-chr1-138983262-3	chr1	138983201	138983401	+	687.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	5644.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	3.00430376469288	3.24419737737188	3.13748940014921	3.34131280735604	3.54322143928815	3.36979380361769	3.1880665484012	3.31283843834293	0.598840847224821	0.283814660677631	0.595894370080181
Merged-chr1-172490453-4	chr1	172490354	172490554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033608, intron 5 of 20)	intron (NM_033608, intron 5 of 20)	8137.0	NM_033608	93842.0	Mm.214530	NM_033608	ENSMUSG00000037995	Igsf9	644ETD8|Dasm1|Kiaa1355-hp|NRT1|Ncaml|mKIAA1355	immunoglobulin superfamily, member 9	protein-coding	6.13370890643534	6.54732824804839	6.13479624469715	5.8853664456979	6.79457381426233	6.48574554048432	6.01737728338445	5.975149616258	0.273421943686156	0.35431355359777	0.661031778977135
Merged-chr1-177110814-4	chr1	177110706	177110906	+	954.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 2 of 12)	intron (NM_011785, intron 2 of 12)	137961.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	4.26744224462055	4.56521763699179	4.91198232237957	5.18408730679263	4.43237047037493	4.17038918717567	4.6467311902758	4.77560625568152	-0.571423901095726	0.183854384324315	0.481035516332307
Merged-chr15-58872622-4	chr15	58872550	58872750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026642)	promoter-TSS (NM_026642)	1.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	5.78070341323687	5.90083508822057	5.23465534836321	5.64937047682306	5.6454938110009	5.67058080347898	5.77532539391922	5.77760706311332	0.0810080742050871	0.77095892994595	0.910353113381267
Merged-chr11-116843540-4	chr11	116843457	116843657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033398)	promoter-TSS (NM_033398)	42.0	NM_028865	74319.0	Mm.429312	NM_028865	ENSMUSG00000090266	Mettl23	1110005A03Rik|1500035B17Rik|4933424L15Rik	methyltransferase like 23	protein-coding	8.55690247516847	8.72638686046549	8.67982035251976	8.37132196226712	8.58542644542899	8.84059873764248	8.4104952962646	8.34210698990401	-0.0351722967890849	0.84414194418065	0.94088019607581
Merged-chr2-3703952-4	chr2	3703850	3704050	+	968.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9508.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	4.82275628233438	4.82712223323663	4.74789220811478	4.92895020936894	4.6257006576666	4.84290892000208	4.8365395657872	5.02324917267943	-0.0216471930489834	0.948174263802517	0.981388084353081
Merged-chr11-102320132-3	chr11	102320007	102320207	+	800.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1011.0	NM_011551	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	2.94379842214194	3.04405259932742	2.94416491394831	2.84175258922292	2.88787053562555	2.98967760205491	2.5875367206347	3.26780874595284	0.0511205211570547	0.937576322888858	0.977363579296412
Merged-chr7-125491491-4	chr7	125491375	125491575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026330)	promoter-TSS (NM_026330)	67.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	7.59706964783251	7.68093380968441	7.41231248408959	7.54754114217122	7.58087528305466	7.53828762197451	7.56966436369862	7.59314751547515	0.00954098878985752	0.955016554419672	0.983972229017382
Merged-chr9-106452384-1	chr9	106452284	106452484	+	763.0	f0_balb.idr	3' UTR (NM_029631, exon 4 of 4)	3' UTR (NM_029631, exon 4 of 4)	-1454.0	NM_021567	59092.0	Mm.286394	NM_021567	ENSMUSG00000023495	Pcbp4	1200003L19Rik|AlphaCP-4	poly(rC) binding protein 4	protein-coding	3.42615119815416	3.52636272327611	3.17536499615823	3.17928569309955	2.49667089578818	2.74551699464627	2.70863603004212	2.79035106458358	-3.66050338066318	2.37830352882592e-05	0.000593775050432482
Merged-chr5-96807419-4	chr5	96807340	96807540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013470, intron 2 of 12)	intron (NM_013470, intron 2 of 12)	14055.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	6.28100167724732	6.26425874421376	5.89804793119958	6.21036515394324	6.18652721627022	6.05153399750038	6.43654885732617	6.432998969712	0.1655155450628	0.490159703949871	0.762136344258112
Merged-chr18-39461778-1	chr18	39461678	39461878	+	643.0	f0_balb.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	25467.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	3.08625796822572	3.2397737454813	3.14811134903092	3.2036647583407	3.2651680424405	3.25779806844933	3.19511710147829	3.20529404329898	0.220501236371487	0.680557391353738	0.868928920613391
Merged-chr7-100500713-6	chr7	100500500	100500700	+	948.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011671)	TTS (NM_011671)	7242.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	3.40675472201324	3.23287341749652	3.10903193793085	3.38029891849404	3.159320924967	3.40892688779887	3.33975628591735	3.5074105325716	0.220339572476868	0.682809827653769	0.87004256061972
Merged-chr13-13415615-3	chr13	13415516	13415716	+	917.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21986.0	NM_010917	18073.0	Mm.4691	NM_010917	ENSMUSG00000005397	Nid1	A630025O17|Nid|entactin|entactin-1|nidogen-1	nidogen 1	protein-coding	4.23217782784334	3.93484646166494	4.14262676606146	4.29539402101108	4.62767209100442	4.11765029527401	3.92528507952628	4.0432606123861	0.151276609483418	0.736586121786011	0.896043754662457
Merged-chr10-94381817-3	chr10	94381719	94381919	+	860.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	69870.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	3.47587289023181	3.55709947847825	3.59176212304599	3.681587957215	3.87184901799841	3.9155525739545	3.73177941052781	3.34840931413986	0.467789013175812	0.348024439595398	0.655882644125099
Merged-chr6-88446512-4	chr6	88446417	88446617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023060)	promoter-TSS (NM_023060)	22.0	NM_023060	65967.0	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|mSelB|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	5.41948830756872	5.69699075555982	5.19557040199278	5.50270150761849	5.7174800865996	5.53600040538615	5.63245131468647	5.38687481230859	0.184562871159063	0.515458113761083	0.777533445789008
Merged-chr1-91053405-1	chr1	91053305	91053505	+	1000.0	f0_balb.idr	promoter-TSS (NM_001310732)	promoter-TSS (NM_001310732)	-39.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	6.08545497961581	5.98680515566462	5.94977594741629	5.96715607118352	6.41999727103688	6.17506228112407	6.80764049453109	6.45364347213068	0.740034008477887	0.00206660829408997	0.0239809442068846
Merged-chr15-95810689-4	chr15	95810590	95810790	+	943.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	19382.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	4.33553808705777	4.03254612705615	4.11118764483846	3.96058404822607	4.27220358710372	3.69745795777563	4.4695517233225	4.65810602009757	0.516082393595952	0.2641416431615	0.576312589873508
Merged-chr3-131976083-4	chr3	131975984	131976184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109208.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	5.75504948553244	5.94272480573674	6.03055456636763	6.0991599265169	5.7544564559646	5.82648358129138	6.07881551974754	5.82619320720485	-0.161733110244666	0.521184986487354	0.781250328647867
Merged-chr2-152793484-4	chr2	152793374	152793574	+	947.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	35015.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	4.91610880321129	4.57844494333236	4.6859731948704	4.70858190161865	4.48349922927725	4.27463721068143	4.42425688662228	4.6071910752515	-0.602549729064451	0.0976980515929462	0.342534890532801
Merged-chr7-141456951-4	chr7	141456852	141457052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028142, intron 2 of 9)	intron (NR_028142, intron 2 of 9)	1764.0	NM_001163689	66853.0	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	5.92017726183855	5.45649289774614	5.24698805334811	5.60900306310243	5.65523922982451	5.72452889952473	5.35035346254464	5.43358569529494	-0.050050844277926	0.86578679574039	0.949727926552738
Merged-chr1-128592335-4	chr1	128592239	128592439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009911)	promoter-TSS (NM_009911)	-40.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	7.0606635719877	7.2790544693262	7.17749978219504	7.16274239939003	6.90550541054548	7.26261084328712	6.61622902919419	7.2051448486193	-0.213929248611556	0.318595205910383	0.630450046191136
Merged-chr14-118089477-4	chr14	118089379	118089579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37233.0	NM_010024	13190.0	Mm.19987	NM_010024	ENSMUSG00000022129	Dct	DT|TRP-2|TRP2|Tyrp-2|Tyrp2|slaty|slt	dopachrome tautomerase	protein-coding	5.21704960389553	5.95931451998745	6.43606306008485	5.59590202466453	5.84465638249118	6.05349303642539	5.84682903590215	6.35401935748104	0.259363817184256	0.44082029446655	0.728164773822774
Merged-chr11-58301925-3	chr11	58301836	58302036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-5133.0	NM_182996	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	5.76867861377554	5.92777397713713	5.28161668389161	5.67924531935773	5.76012639258552	5.99007348079758	5.71642313773349	5.53059280309164	0.113873889792404	0.687883689606525	0.872545186536627
Merged-chr15-93576049-3	chr15	93575949	93576149	+	673.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033217, intron 1 of 7)	intron (NM_001033217, intron 1 of 7)	19842.0	NM_001033217	106042.0	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	3.59913156081153	3.71882524219208	3.59957660674967	4.03891399541864	3.81696684409006	4.03830950241751	3.90008484365823	3.8669699205836	0.374619281666975	0.432589420622373	0.722596762180336
Merged-chr11-51289799-5	chr11	51289721	51289921	+	984.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153393)	promoter-TSS (NM_153393)	-99.0	NM_153393	237759.0	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	4.60070910914711	4.82314041361059	5.00490781822164	4.62834286545887	4.05912435512145	4.51757966664125	4.31991729646057	4.59843237832953	-0.875535453240573	0.0250178031085171	0.14851894974655
Merged-chr7-6171596-4	chr7	6171507	6171707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146024)	promoter-TSS (NM_001146024)	-906.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	5.67371296926047	5.76309761824356	5.48040662111566	5.70293124186648	5.76368144677365	5.89946938837671	5.56693698573867	5.88322514832285	0.193883954555371	0.455916159713698	0.739318729946264
Merged-chr4-101670025-4	chr4	101669929	101670129	+	756.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22246.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	4.1149425696804	3.93956246019548	3.73617197843807	3.85590536835467	3.72806034706055	3.47206133484082	3.96857047498752	4.02832311572504	-0.282065996423419	0.55386199798094	0.80043514274805
Merged-chr5-144931993-4	chr5	144931883	144932083	+	938.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038627, intron 1 of 17)	intron (NM_001038627, intron 1 of 17)	33847.0	NM_001038627	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	4.58106220442285	4.5256925094282	4.73365459631937	4.84346797801576	4.6147054908984	4.28341094154758	4.56073635180686	4.69426125010868	-0.296428454342023	0.416668167306995	0.71063511686235
Merged-chr4-144905289-4	chr4	144905196	144905396	+	981.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	12159.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	4.96105841326061	5.25543906393023	5.25439042206212	5.42980808858186	4.94102802826839	4.98502992090036	5.10748791037923	4.8441827035473	-0.53384459186484	0.0915382884071727	0.330590280102194
Merged-chr19-55806930-3	chr19	55806833	55807033	+	612.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	65123.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.44335069080001	3.31690717913008	3.38980793088925	3.63046261286929	3.22866002127186	3.18929379660184	3.20208067607983	3.54327855729352	-0.573849763189219	0.290615584602037	0.602869066641471
Merged-chr7-19872375-2	chr7	19872275	19872475	+	824.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11076.0	NM_001033419	330483.0	Mm.260192	NM_001033419	ENSMUSG00000014686	Ceacam16	Gm769	carcinoembryonic antigen-related cell adhesion molecule 16	protein-coding	2.88263641475086	2.79338013741922	3.12086015582532	2.6608706858136	2.95734733795708	3.05690929563047	2.99582147686025	3.06363568458665	0.666994105285248	0.273555636527567	0.585184127318498
Merged-chr3-107038339-4	chr3	107038208	107038408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008418)	TTS (NM_008418)	-1196.0	NR_033498	229694.0	Mm.347584	NM_173787	ENSMUSG00000056145	AI504432	A230102G19	expressed sequence AI504432	ncRNA	5.21131057986601	5.0273529698449	5.05423702597463	5.26079399691769	5.32066132184698	4.65494200842456	4.96120063812881	5.08398542351532	-0.199993947255507	0.54811839907767	0.797236209191938
Merged-chr3-40540820-4	chr3	40540727	40540927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175515)	promoter-TSS (NM_175515)	60.0	NM_175515	380614.0	Mm.105309	NM_175515	ENSMUSG00000060798	Intu	9230116I04Rik|9430087H23Rik|Pdzd6|Pdzk6|mKIAA1284	inturned planar cell polarity protein	protein-coding	6.82304123415955	6.83088436806731	6.87710655090928	7.02029384136392	6.54869428529767	6.55281234102364	6.61683331613429	6.44483035931027	-0.509442089992663	0.0114445971059687	0.0869200786817909
Merged-chr4-3679941-7	chr4	3679877	3680077	+	985.761902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	1856.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	5.14207449039903	4.95508388124941	4.92350223716316	4.23955136173672	4.54971451437904	4.79397616423378	4.86496065780066	5.08051771405554	-0.0270136740342879	0.946179162726509	0.980814540550536
Merged-chr4-139043798-4	chr4	139043688	139043888	+	905.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029857, intron 14 of 16)	L1MEd|LINE|L1	31001.0	NM_021358	15565.0	Mm.291096	NM_021358	ENSMUSG00000028747	Htr6	5-HT6	5-hydroxytryptamine (serotonin) receptor 6	protein-coding	4.91989435975686	4.69599536433225	4.92073723436755	4.59962589849821	4.26776152162167	4.60300159891459	4.65594140392265	4.42271829353139	-0.643040092914772	0.0815245757108519	0.309798073362916
Merged-chr8-46887510-4	chr8	46887415	46887615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-99372.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	6.65858144802084	6.42831013088399	6.68934264168985	6.73165677544434	6.58957454725727	6.47582622200742	6.58028905103692	6.63995990193687	-0.0906424823898538	0.664235563084577	0.860897378772322
Merged-chr10-82909493-4	chr10	82909385	82909585	+	809.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42859.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	4.2297487836491	3.72686106402219	3.71277355229396	3.70518133388824	4.20357242304389	4.09763138740455	3.85965809351197	3.7108016539776	0.366324804674291	0.441301365924218	0.728396857622944
Merged-chr3-15960939-1	chr3	15960839	15961039	+	917.0	f0_balb.idr	intron (NM_001081687, intron 3 of 3)	intron (NM_001081687, intron 3 of 3)	45393.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	3.96978000718907	3.45467152005465	3.88594055508458	4.35951572916642	3.16063551164562	3.17852690038315	3.34076205135968	3.21352184339514	-2.63306979879442	1.77858167417391e-05	0.000460187804383951
Merged-chr11-34058375-4	chr11	34058273	34058473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 3 of 20)	MTD|LTR|ERVL-MaLR	11445.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	7.10424558892891	7.30497720030882	6.64577813382954	6.82957539925665	7.37658600282123	7.22259891548476	7.14853547997392	6.92556079066224	0.260782568180569	0.24849650035439	0.55963210778729
Merged-chr16-55951183-4	chr16	55951133	55951333	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME2z|LINE|L1	-15042.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	5.17827085354118	5.38332630907258	5.30669101470008	5.92953298731234	5.32485955999361	5.14049103762691	5.12020234700647	5.24090180498056	-0.529451740484572	0.108246490373553	0.363129274120989
Merged-chr2-128753618-4	chr2	128753496	128753696	+	867.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 6 of 18)	ID_B1|SINE|B4	54681.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	4.21634210646243	3.92042444011876	4.29874235200506	4.26402189140761	3.91365839459636	3.69348874787423	4.01857550234464	4.25578902967902	-0.524654643220694	0.238021448394677	0.548306698446056
Merged-chr3-83875274-4	chr3	83875191	83875391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK9C_I-int|LTR|ERVK	-33683.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	6.09213992630386	6.5825403220599	5.83470141515402	5.67999215481434	6.36124813526998	6.37125509003725	6.42657910086732	6.17114109721436	0.377168625644944	0.182764682831564	0.479460757430375
Merged-chr5-125052354-4	chr5	125052242	125052442	+	914.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 18 of 46)	intron (NM_011424, intron 18 of 46)	48867.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	4.49896157164719	4.76068295507514	4.46064725705062	4.13536791635887	4.16208292627741	4.16840356036986	4.07934719608488	4.37592926859178	-0.660183041704374	0.114181951093737	0.373809083658407
Merged-chr8-125669938-4	chr8	125669836	125670036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028908, exon 1 of 1)	exon (NM_028908, exon 1 of 1)	118.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	5.47670324910725	5.14493798279759	5.57974711252172	4.89736136148372	5.48365204634125	5.10083968440708	5.50167075073738	5.44693897965235	0.20657963343477	0.52616691603018	0.783568247232079
Merged-chr16-93833742-4	chr16	93833634	93833834	+	980.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045529, intron 1 of 16)	intron (NM_001045529, intron 1 of 16)	1613.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	4.73925160338679	4.75495378183071	4.28739376885122	4.38919710288955	5.00576326180644	4.71119730467256	5.01943634786587	5.07082854444724	0.857185684449003	0.0152748508102053	0.106228491042462
Merged-chr10-89745005-4	chr10	89744886	89745086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029166)	promoter-TSS (NM_029166)	-5.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	7.52307573716809	7.549067687846	7.34616808453095	7.68873897815872	7.5944309669171	7.80765028847551	7.85169543699511	7.36215042106429	0.165652762701466	0.391309147006611	0.691068990195101
Merged-chr13-55727455-4	chr13	55727337	55727537	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028281)	promoter-TSS (NM_028281)	69.0	NM_028281	72562.0	Mm.28145	NM_028281	ENSMUSG00000021496	Pcbd2	2700061N24Rik|Dcoh2|Dcohm	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2	protein-coding	5.99162318134485	5.64926724372606	5.60049247961534	5.16707191013279	5.76768738833967	5.87934683401066	6.01949742403158	5.25848293856694	0.233038420501483	0.473068278307012	0.751032161963083
Merged-chr8-46868897-4	chr8	46868803	46869003	+	760.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117984.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	3.64944065682189	4.28874383161431	4.14557894058896	3.7307808002877	3.93961521986221	3.76899941746374	3.75053334515869	3.91908812895205	-0.351717337528343	0.464701239186403	0.745530901436855
Merged-chr17-50513574-2	chr17	50513480	50513680	+	835.5	f0_balb.idr|f1_balb.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	4033.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	3.47766857640112	3.94799507184727	3.58931329981286	3.76549484624559	3.35898548282191	3.70666015511622	3.21381201942842	3.47630036810401	-0.866679614807606	0.10249296375176	0.351644491041765
Merged-chr11-116406321-3	chr11	116406207	116406407	+	776.5888669999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 1 of 18)	L1MB7|LINE|L1	6725.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	3.25632024349018	3.20666013233834	3.11642152065685	2.79494335853898	3.75096919002051	3.78153345746387	3.78070944031699	3.84005531408658	2.54132839928053	2.84965080900576e-06	9.0309570317997e-05
Merged-chr3-62159206-4	chr3	62159121	62159321	+	807.483337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-179556.0	NM_001081295	622434.0	Mm.153974	NM_001081295	ENSMUSG00000036885	Arhgef26	4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding	5.3490852158324	5.2616222141417	5.00246320266664	2.86837531718926	4.62270281257728	4.71598035266279	4.63977382208689	5.61812140431727	0.0241163147424552	0.983521229554515	0.99405122610523
Merged-chr19-36006456-4	chr19	36006368	36006568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360298, intron 1 of 2)	MER54A|LTR|ERVL	50892.0	NM_001360318	15566.0	Mm.254266	NM_008315	ENSMUSG00000024798	Htr7	5-HT-X|5-HT7	5-hydroxytryptamine (serotonin) receptor 7	protein-coding	4.15261930249232	4.76484520819807	5.1943835975802	4.92449851428213	4.70589428448788	4.16012250191104	5.02990873632147	4.75470282548712	-0.231557307806879	0.604937482676867	0.828648905155032
Merged-chr12-80794592-2	chr12	80794492	80794692	+	909.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	B1_Mus1|SINE|Alu	4060.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	2.4951948709907	2.34488242634266	2.66712565941764	1.99144001671464	2.29317005390253	2.33005264487695	2.06252436939517	2.29678616192219	-0.885722820683306	0.300424657289025	0.612432455247845
Merged-chr18-74216098-4	chr18	74215999	74216199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028868)	promoter-TSS (NM_028868)	-113.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	8.95988664559703	8.89807890104641	8.84445494709654	8.93323703525214	8.93315129911643	9.18195668522249	8.92846626385164	8.57613395452839	0.0150246771471197	0.928835160008082	0.974235328375457
Merged-chr7-133046751-4	chr7	133046647	133046847	+	887.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	-31500.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	4.70156283466649	3.98964736954907	3.69277547032151	4.30871277405568	4.43214678698337	4.23113459545731	4.31673532777368	4.41591234846893	0.298445184020874	0.521932655986772	0.78174030512557
Merged-chr5-63967648-6	chr5	63967504	63967704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145923, intron 1 of 6)	intron (NM_145923, intron 1 of 6)	1293.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	4.73431776695066	4.5940524153951	4.77124438500007	4.82087257084213	4.52738175487527	4.66818674400214	4.59859476544033	4.65637510399134	-0.280948984040532	0.412117592218935	0.707360767908854
Merged-chr6-145250342-4	chr6	145250239	145250439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021284)	promoter-TSS (NM_021284)	-108.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	7.76870154782049	7.90390477097076	7.49112240768696	7.80755941905653	7.83042834350785	7.80702546849946	7.81513060414298	7.65884463316595	0.0315893060353068	0.856706336003023	0.946063986135646
Merged-chr4-129335444-4	chr4	129335366	129335566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025970)	promoter-TSS (NM_025970)	-96.0	NM_009030	19646.0	Mm.12145	NM_009030	ENSMUSG00000057236	Rbbp4	RBAP48|mRbAp48	retinoblastoma binding protein 4, chromatin remodeling factor	protein-coding	8.38958367514126	8.65055633054313	8.03356255250134	8.07635645222271	8.50104003244703	8.76365326546561	8.2647728061634	8.41666940217258	0.237816896397461	0.23902839905717	0.54953718047565
Merged-chr13-113611797-2	chr13	113611697	113611897	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	6767.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	4.12767056182112	4.21651769456299	4.17352119818197	3.45964270808655	4.20231055979157	4.38802575889875	3.85970441944227	4.12571987665712	0.34970566082733	0.4718822303775	0.75015310499252
Merged-chr7-16149406-3	chr7	16149304	16149504	+	800.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347561, intron 4 of 8)	intron (NM_001347561, intron 4 of 8)	19578.0	NM_148946	110891.0	Mm.241147	NM_148946	ENSMUSG00000030376	Slc8a2	Ncx2	solute carrier family 8 (sodium/calcium exchanger), member 2	protein-coding	3.90866240712847	3.96728373006625	3.68589152744769	4.01693356829227	3.62922214382418	4.18023092047936	3.78711609489639	4.47634234155136	0.405808775630093	0.410617142974108	0.706007962214455
Merged-chr2-4401314-3	chr2	4401234	4401434	+	693.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001177843, exon 1 of 24)	5' UTR (NM_001177843, exon 1 of 24)	358.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	3.256067479376	2.97167189387373	3.49313883642727	3.3254800444533	3.48494131564512	3.7161232704574	3.4788136054429	3.73629464299615	1.11009940933433	0.0404634849526835	0.203256908641289
Merged-chr6-83965341-3	chr6	83965227	83965427	+	737.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355286, intron 16 of 26)	intron (NM_001355286, intron 16 of 26)	-43271.0	NM_001077694	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	3.19352782072711	2.86043323997268	2.72348366422386	2.93806047965473	3.38849148306904	3.12294338493987	3.18122778252099	3.44733855399975	1.39039443899202	0.0209262860590273	0.132025537617045
Merged-chr5-138209703-3	chr5	138209602	138209802	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	15388.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	5.10563080746637	4.94805376818055	5.44351706072529	5.67225341410553	3.2586680475805	3.63913442067154	3.72403385981314	3.58271711172844	-6.66684764835364	9.96251267443651e-12	8.98760062932467e-10
Merged-chr3-37771120-4	chr3	37770992	37771192	+	891.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-46732.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	4.33506143368946	4.02510779715254	3.49170868327027	3.3330511138356	3.59337552944642	3.94260191934379	4.650753549151	4.51393386858082	0.957296994026153	0.101165172252487	0.349148360927065
Merged-chr1-95666367-4	chr1	95666276	95666476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 1 of 3)	intron (NM_001159745, intron 1 of 3)	1218.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	5.91847192709503	5.80572084864985	5.49820847536453	5.97731431558473	5.40716936813565	5.30975842034086	5.70942348284398	5.89406391474641	-0.373800577361911	0.197539712447484	0.498959517114957
Merged-chr2-174673750-2	chr2	174673650	174673850	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001099328, intron 3 of 4)	intron (NM_001099328, intron 3 of 4)	30216.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	3.07183430074187	2.79018831673507	3.40573010138297	2.65386928855949	3.13949135635051	3.18619343506793	3.389972420525	3.1913143428462	0.862335059940864	0.178723371272861	0.47462414072421
Merged-chr1-165189027-4	chr1	165188974	165189174	+	684.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151711, intron 1 of 6)	intron (NR_151711, intron 1 of 6)	5359.0	NM_145512	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	3.55766336925834	3.95062401334954	3.4964424156148	3.65121071948279	3.80601409654551	3.73486720510559	3.99311521376279	3.92139163559934	0.550768149436398	0.240993428098331	0.551619163882296
Merged-chr4-103110152-4	chr4	103110067	103110267	+	794.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146254, intron 1 of 16)	ID_B1|SINE|B4	4132.0	NM_146254	242584.0	Mm.374877	NM_146254	ENSMUSG00000035126	Wdr78	BC028975	WD repeat domain 78	protein-coding	3.44056388438979	3.11364603227593	3.10231778354644	3.22537012002272	2.94326205395967	3.21373948202384	3.47403818928048	3.28097178225625	0.0425017603346685	0.941126942752548	0.978762669971416
Merged-chr16-45252619-2	chr16	45252494	45252694	+	785.0	f0_balb.idr|f1_balb.idr	3' UTR (NM_177584, exon 6 of 6)	3' UTR (NM_177584, exon 6 of 6)	28257.0	NM_177584	208154.0	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	3.11119584337307	3.35942851256574	3.27949945093481	3.74485203202578	2.60738116357978	2.88316910879692	2.84018399627175	2.77281633199961	-3.14888174490735	4.30797297992985e-05	0.000992996142287651
Merged-chr10-127632123-4	chr10	127632009	127632209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10877.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	8.15227667301983	8.02893797370844	8.09334256834451	7.91212262459813	7.7656781560329	7.79588925853999	7.9719865151358	7.44916731354888	-0.369473826664632	0.0414204499502577	0.206103534381581
Merged-chr6-65164355-4	chr6	65164263	65164463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19633.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	5.47268866038469	4.63490590720529	5.27576774621615	5.97976353408302	5.16238652699361	5.14578960014609	5.21871968475021	5.20944600282744	-0.46984674862566	0.223518858255757	0.531602771975184
Merged-chr17-22866510-4	chr17	22866396	22866596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177358, intron 1 of 5)	intron (NM_177358, intron 1 of 5)	638.0	NM_177358	240041.0	Mm.328828	NM_177358	ENSMUSG00000059142	Zfp945	A630033E08Rik|C730040L01Rik	zinc finger protein 945	protein-coding	5.86837661291863	5.76960731517672	5.38030944132027	6.00819892880229	6.27145425661908	5.77025787240206	5.69721718277952	5.47205803747978	0.10411689502573	0.737581151923646	0.896392006995728
Merged-chr18-32204931-4	chr18	32204821	32205021	+	829.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011946, intron 7 of 16)	intron (NM_011946, intron 7 of 16)	-35410.0	NM_133658	13872.0	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	3.85301124446688	3.74636906067819	3.52302000277367	3.91281675395482	3.85297510624623	3.63897636930282	3.83730173124498	4.03183439656516	0.207364493905421	0.657856286962594	0.857579088863969
Merged-chr10-118811290-4	chr10	118811193	118811393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57610.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	7.42750581610053	8.015157331155	7.98249847546317	7.67119868767519	8.18201343707091	8.14643637154768	8.13212353463138	7.80289818482638	0.364184325476559	0.0673228214162609	0.27683253065211
Merged-chr5-65698392-6	chr5	65698347	65698547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081321)	promoter-TSS (NM_001081321)	-591.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	5.55663281674727	5.9428814646028	5.71281340431833	5.43138458608059	5.67424690394171	5.78615110860723	5.32246975114275	5.6075238318149	-0.0953735575800891	0.740074297650367	0.897683586969888
Merged-chr1-191071700-4	chr1	191071576	191071776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 4 of 5)	intron (NM_198654, intron 4 of 5)	8655.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	5.83031205524116	5.99232022971436	5.92431291531104	5.9155358243556	5.81312351286424	5.95797777620973	5.89416225497854	6.00660072265291	-0.00653112324915634	0.97826927259879	0.99227959863068
Merged-chr17-29045207-3	chr17	29045122	29045322	+	855.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12562.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	3.91905542815858	3.71528526714737	3.77310160097076	3.23134463626379	4.23952845585247	3.78560232054689	3.65078824683474	3.71818309215228	0.587066274758608	0.265676152135975	0.577343448210064
Merged-chr3-101597903-4	chr3	101597795	101597995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	6812.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	6.44790140639692	6.14292089093313	5.74521189689583	6.30934556998558	6.14977667067917	6.28032289121826	6.21071370427759	6.01384409251388	-0.0438592863482381	0.86347284227331	0.948591391532472
Merged-chr11-101983272-7	chr11	101983148	101983348	+	906.9761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028207, intron 1 of 2)	intron (NM_028207, intron 1 of 2)	1543.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	3.36124807569577	3.25467099298626	4.17360912183074	3.23318592906238	3.52338662577426	3.79592425252197	3.85983396666178	4.27862771529609	0.93179693317086	0.116280127757231	0.377259821032497
Merged-chr3-108444813-2	chr3	108444718	108444918	+	948.75	f0_balb.idr|f0_c57.idr	intron (NM_011319, intron 1 of 11)	CpG	441.0	NM_011319	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	4.9134761389742	4.76022094203155	5.22927716938264	4.69722898263957	5.04954489193988	4.81495235734979	5.17504869862033	4.83745486607129	0.161055808610612	0.637461694934314	0.846780493873723
Merged-chr1-153443874-3	chr1	153443771	153443971	+	835.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033162, intron 6 of 9)	B4A|SINE|B4	18662.0	NM_001033162	71836.0	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	3.56580200629776	3.61923771157162	3.67222553793354	3.74348018079854	3.38875787468448	3.73752072509376	3.43867239826541	3.71986328291354	-0.267333858553018	0.586362575142674	0.818595756960672
Merged-chr6-125096080-4	chr6	125095954	125096154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145979)	promoter-TSS (NM_145979)	73.0	NM_001346610	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	6.53692662050879	6.90268535258794	6.24709113695944	5.8151032699314	6.82086504145962	6.88087704408365	6.6708298248272	6.22201870765948	0.35380452870244	0.237116171008578	0.547279017452248
Merged-chr1-171051004-4	chr1	171050906	171051106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010188)	TTS (NM_010188)	8388.0	NM_001356511	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	5.58272634159247	5.51013819329083	5.52874973319672	5.64184240534777	5.69608556258517	5.46069292037661	5.68249141951633	5.90883296419857	0.211655636775031	0.425796311859891	0.717190555429026
Merged-chr13-51388280-3	chr13	51388158	51388358	+	800.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-20360.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	3.35149053170274	3.32567463858362	3.4582259323326	3.47399304192226	3.0880586010771	3.21903827685223	3.16349236478843	3.45620472487742	-0.636227090747954	0.240840116103424	0.551409135839867
Merged-chr8-43416050-4	chr8	43415928	43416128	+	841.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109019.0	NM_009556	22702.0	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	4.32386304336242	3.82389356975965	4.32455987396162	3.91039299934887	3.84809358096903	3.9340720646169	3.9070463237317	4.35868223217202	-0.213567895682001	0.645594897194111	0.850934142345746
Merged-chr3-126655274-4	chr3	126655171	126655371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	58320.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	6.13071290295726	6.24726230492704	6.41450524686407	6.50733563532532	6.21930819018244	6.44725060021006	6.3126385005492	6.08449885658928	-0.114970784590282	0.623232547701784	0.838922840312846
Merged-chr4_GL456216_random-38951-1	chr4_GL456216_random	38851	39051	+	579.0	f0_c57.idr	Intergenic	Intergenic	23070.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	2.46661321658672	2.40974570738711	2.46682240486754	2.09771466926359	3.27280989463436	3.22867958091327	3.03444705395542	3.61701236647301	7.23692302027415	1.3313272970259e-12	1.38948014186227e-10
Merged-chr2-29772317-4	chr2	29772208	29772408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10780.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	5.98465518703942	6.01338600314274	5.8709437786575	6.06542932967862	5.87011735565426	6.11636978279656	6.19295445782998	6.02463224891888	0.0864895258767117	0.718643603043568	0.887629976798039
Merged-chr11-53436553-4	chr11	53436493	53436693	+	875.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008110, intron 1 of 1)	intron (NM_008110, intron 1 of 1)	3307.0	NM_008110	14566.0	Mm.9714	NM_008110	ENSMUSG00000018238	Gdf9	Gdf-9	growth differentiation factor 9	protein-coding	3.84563618429871	4.04990257053612	3.84618979895992	3.69324626202515	3.57602895779742	4.01845314735195	3.83017579988834	4.03322419543023	0.0304417845836723	0.947830054063862	0.981348536548879
Merged-chr9-31386141-4	chr9	31386059	31386259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172766)	promoter-TSS (NM_172766)	-33.0	NM_172766	235134.0	Mm.238146	NM_172766	ENSMUSG00000042185	Nfrkb	A530090G11Rik	nuclear factor related to kappa B binding protein	protein-coding	7.52338824453006	7.43429781957021	7.09822287492725	7.55362210417694	7.39053285998642	7.40484796221551	7.33840074268344	7.02975127498054	-0.161153100678558	0.420438128301644	0.713274332060183
Merged-chr10-80159243-4	chr10	80159183	80159383	+	983.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021565)	TTS (NM_021565)	-8556.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	4.44920898867632	4.65002005942154	4.4070083075762	4.10942619891126	4.41207206576715	4.7783493917763	4.29774378201555	4.48852072078197	0.219609828697747	0.580362795577164	0.815718435955212
Merged-chr2-167589482-4	chr2	167589397	167589597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	42508.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	8.00640441820226	8.39164331117378	7.66271304350993	7.7742795291175	7.96434382839605	8.09507867029204	8.17808518382223	7.69229628212381	0.00690200561238432	0.974465813101445	0.990913996665327
Merged-chr3-127625479-4	chr3	127625383	127625583	+	953.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7653.0	NM_009718	11924.0	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	4.79499696914211	4.61453805434947	4.72414584046001	4.76797872838478	4.49498131613678	4.65671719654174	4.77272238521499	4.38629072896795	-0.318559251606599	0.364915898967765	0.669640641603313
Merged-chr2-113648373-4	chr2	113648275	113648475	+	857.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 13 of 16)	intron (NM_001285459, intron 13 of 16)	-36715.0	NM_001287818	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	4.66006047847441	4.52585831029399	4.26233504518434	4.64479903323884	4.77640627247772	4.86902836398177	4.74720720516697	4.35932049816989	0.350899566211393	0.344651738000869	0.653140736399464
Merged-chr5-134233358-4	chr5	134233276	134233476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3751.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	5.63894704413631	5.53179222958422	5.71356844488942	5.77920737901104	5.51848215037942	5.3334673134058	5.56021421502023	5.53065395616096	-0.315167890829002	0.238350312311818	0.54879281042504
Merged-chr11-53980408-4	chr11	53980221	53980421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019723)	promoter-TSS (NM_019723)	12.0	NM_001362202	56517.0	Mm.154284	NM_019723	ENSMUSG00000063652	Slc22a21	Octn3|Slc22a9	solute carrier family 22 (organic cation transporter), member 21	protein-coding	6.1484655348313	6.02859225840837	6.09029098930932	6.16483020095065	6.09161261250441	5.83955225022951	6.01827899856188	5.73928934750752	-0.270837238482706	0.262769338163981	0.574595518453318
Merged-chr15-34307005-4	chr15	34306822	34307022	+	913.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358780, intron 1 of 18)	CpG	241.0	NM_016762	17181.0	Mm.396856	NM_016762	ENSMUSG00000022324	Matn2	Crtm2|matrilin-2	matrilin 2	protein-coding	3.54921590661869	3.32234169870195	3.54970735224071	3.7411816631897	3.35829461654806	3.55368277013685	3.58660797207027	3.43760141104365	-0.254512491688434	0.618555247438993	0.836022749315106
Merged-chr14-65593064-4	chr14	65592990	65593190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253812)	promoter-TSS (NM_001253812)	22.0	NM_001253812	74195.0	Mm.29719	NM_028811	ENSMUSG00000022031	Elp3	2610507P14Rik|KAT9	elongator acetyltransferase complex subunit 3	protein-coding	6.7787106350514	6.92221947925072	6.57953377953326	6.50229421676957	6.99455575032663	6.82167595383956	6.90502207675538	6.85772994441567	0.287792721822553	0.169091502988253	0.46161486940974
Merged-chr10-111103335-4	chr10	111103248	111103448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61454.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	8.26926915047046	8.43226907209116	8.53715860858509	8.72858920772027	8.25819630713108	8.15403466410612	8.55737505162921	8.4184708338467	-0.194068464385225	0.277550656850959	0.589700641340894
Merged-chr10-10325739-3	chr10	10325642	10325842	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	146572.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	5.16919197087614	4.93686478001184	4.9561664794581	5.07235140473962	3.60328216403826	3.94976565354689	3.7348375316351	3.74664309707909	-3.51047455664009	8.00270272738475e-13	8.68329843647133e-11
Merged-chr1-53777947-2	chr1	53777854	53778054	+	663.0	f0_balb.idr|f1_balb.idr	intron (NM_133810, intron 1 of 7)	ORR1F|LTR|ERVL-MaLR	7261.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	3.46804993682267	3.36753274604653	3.20673938287868	3.35795097763494	3.04227815738338	3.19495254891788	2.94251545783269	3.01819066805459	-1.2095631850682	0.0355505590404378	0.187191392361246
Merged-chr16-32813585-2	chr16	32813466	32813666	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3120.0	NM_001256309	381043.0	Mm.303864	NM_001256309	ENSMUSG00000094430	Smbd1	Gm1743|Gm933	somatomedin B domain containing 1	protein-coding	3.68451522924955	3.36034581378929	3.08889575437885	2.82182961981573	3.0198845341116	3.13747658698019	2.80239835495952	3.08731076231681	-1.00877991391929	0.126639094440025	0.395674769095591
Merged-chr15-73089725-4	chr15	73089642	73089842	+	929.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053068)	promoter-TSS (NM_053068)	-670.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	4.66222427701749	4.84389943690068	4.45582719588338	4.28555400548941	4.69192605321087	4.39229254189999	5.00051660873305	4.5398081199731	0.237276591812937	0.542759792972311	0.793922846530958
Merged-chr9-103092405-4	chr9	103092313	103092513	+	950.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19661.0	NM_173781	270192.0	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	4.8620470564969	4.70931160183817	4.66720382533314	4.08216224708327	5.08037582090253	4.96425268577654	5.06898760263083	5.26033373092032	1.03346475525128	0.00544825440181474	0.0506201931949839
Merged-chr1-64367792-4	chr1	64367682	64367882	+	987.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-165022.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	6.01304422697444	5.74888902026831	6.33789317520347	6.59704704017669	6.02206500242643	5.37972700370146	6.0464467266554	6.13373963541453	-0.456650968866618	0.142274306266061	0.419796840696448
Merged-chr13-44939516-3	chr13	44939408	44939608	+	806.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 7 of 9)	RLTR24|LTR|ERV1	62588.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	4.44100478818323	5.16596590801497	3.70984635007207	3.30621548778355	4.26788057663146	4.57724206077192	3.88624994107585	4.39780290685962	-0.163750893631259	0.860836070506118	0.947434797559336
Merged-chr19-27429334-1	chr19	27429234	27429434	+	672.0	f0_balb.idr	promoter-TSS (NR_027987)	promoter-TSS (NR_027987)	574.0	NM_177474	52874.0	Mm.261027	NM_177474	ENSMUSG00000041360	Pum3	1110069H02Rik|AA675048|D19Bwg1357e	pumilio RNA-binding family member 3	protein-coding	3.84514649295577	3.81926866260553	3.57627642693068	3.84022818970789	3.68739100587371	3.863254943786	3.82946192528469	3.84343623276918	0.064778727964573	0.886197888531667	0.957247996194402
Merged-chr13-58471892-2	chr13	58471792	58471992	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68549.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	3.10347974933144	3.05235093789296	3.28185868593749	2.52415122157021	3.26076484448409	3.45392789508532	3.32161311116229	3.16417120415105	1.08815724665002	0.0978825233020691	0.342822424155783
Merged-chr3-41444540-3	chr3	41444444	41444644	+	867.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48655.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	3.56968067760274	3.43503860998471	4.09143691082574	4.686455419344	3.13808425716578	3.2878278430637	3.43554567007095	3.31380960277085	-2.45495723697672	0.000117960476849436	0.00232601698374482
Merged-chr2-44920690-4	chr2	44920589	44920789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59067.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	7.12551961631304	7.16113632453	7.24852660940098	7.10659950593937	7.0544364788821	7.27987584617061	7.147611138713	7.03768470618602	-0.0393389233524603	0.830518283639442	0.93499882818844
Merged-chr7-127850316-4	chr7	127850217	127850417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8509.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	7.16309818197451	7.97711343577614	7.68883319263057	7.64555480195649	7.91493156921071	7.54951225880596	7.90338725947266	7.68358310143241	0.159093569557354	0.461132883120266	0.742937471426379
Merged-chr1-138982450-4	chr1	138982346	138982546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	4789.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	6.17346840712337	6.03850341442131	5.76175275146769	6.26316482364291	6.22857588476502	6.34945345432632	6.16227281985183	6.08938885739176	0.187730711793036	0.443861594541914	0.730375449472541
Merged-chr6-54817641-4	chr6	54817532	54817732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199143, intron 1 of 4)	intron (NM_199143, intron 1 of 4)	716.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	7.64335912257746	7.45114789332224	7.68438014328126	7.74377311750553	7.20807896178142	7.17014317922231	6.99645007262028	7.18732928120096	-0.661839921133995	0.000275989655684453	0.00473941494610982
Merged-chr1-165661379-1	chr1	165661279	165661479	+	718.0	f0_balb.idr	intron (NM_001038846, intron 2 of 5)	intron (NM_001038846, intron 2 of 5)	-26838.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	3.19992834705481	3.30619255487146	3.80318278920123	3.38777479913149	3.25020006132199	3.31266510995172	3.25125976310366	3.32087319870186	-0.562283400186955	0.307293225745048	0.619503909006905
Merged-chr2-160066997-3	chr2	160066910	160067110	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50357.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	4.10353240533339	4.32959063036094	4.48753564102	4.83236729964272	3.239746020206	3.39036396121111	3.33499731033178	3.34408378543434	-4.1141100555755	9.5141415160906e-10	6.13968339958126e-08
Merged-chr1-161594828-4	chr1	161594732	161594932	+	985.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	100175.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	5.16097938594334	5.25435655343676	5.94262434191023	5.42584639553252	5.03982232923234	5.4035400210829	5.26395940423875	4.85587342128706	-0.589812988313139	0.0833142393906686	0.313718681986373
Merged-chr9-56068149-3	chr9	56068047	56068247	+	859.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21829.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	3.51000167638473	3.64508788299585	3.39589186260286	3.4495212058658	3.62950607929278	3.62538039023008	3.49696628286472	3.50858018823197	0.220685972210806	0.649509496747712	0.852789723105685
Merged-chr13-98867963-4	chr13	98867844	98868044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 7 of 23)	intron (NM_178716, intron 7 of 23)	23098.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	5.87320878346766	6.02638765863575	6.0090385991185	6.33866119405285	6.03732621155119	5.53870673760241	6.15572513043535	5.74574874811007	-0.2972301785011	0.280712900058306	0.592852320632664
Merged-chr5-96911727-4	chr5	96911638	96911838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9534.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	7.61945790409442	7.74426316247561	7.98871785266228	7.90506666717387	7.75525411305422	7.8926041936506	7.9959147699084	7.75850590495772	0.0341265552527347	0.845727155659261	0.941564790489552
Merged-chr10-40372522-4	chr10	40372416	40372616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291816, intron 1 of 11)	intron (NM_001291816, intron 1 of 11)	23208.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	6.27901613573637	6.15364654740079	6.46108747410961	6.28437385522162	5.67750047210954	5.64631576590738	5.85850116036294	6.164667183055	-0.700223174597697	0.00577882553195095	0.0528499322290552
Merged-chr10-57632055-4	chr10	57631980	57632180	+	943.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008863)	promoter-TSS (NM_008863)	99.0	NM_001039051	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	5.02195506263696	4.88128916221401	4.92274527681218	5.11811977094752	4.6913938818264	4.60240913429381	5.06020021953362	4.77259790597922	-0.416916590852802	0.213650027520747	0.519130037171409
Merged-chr8-12756953-4	chr8	12756861	12757061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293667)	promoter-TSS (NM_001293667)	-55.0	NM_015804	50770.0	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	6.4100055186765	6.29104604707631	6.3581132498608	6.57564288033597	6.2107155042838	6.42130692106914	6.66763998786448	6.13884539838181	-0.0761696457819927	0.748617235743555	0.901023223134367
Merged-chr15-67124918-4	chr15	67124820	67125020	+	906.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 3 of 8)	MIRc|SINE|MIR	51962.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	6.17958664222628	6.09464234882412	6.14717868454203	6.17625000771809	4.38747898333092	4.99059107296987	5.18138295553599	4.69571025338425	-2.38598958635657	1.60857758972416e-13	2.01934645959393e-11
Merged-chr5-35693800-4	chr5	35693704	35693904	+	876.054199	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14024.0	NM_030127	78558.0	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	4.24294569965561	4.35814142372431	4.80369703718705	4.59593571218204	4.34329478309881	4.32027308262566	4.81160278104155	4.42729523206711	-0.0709688021991976	0.858435605612301	0.946576014812915
Merged-chr13-51756775-3	chr13	51756676	51756876	+	860.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281880, intron 2 of 16)	intron (NM_001281880, intron 2 of 16)	36971.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	3.70378280211361	3.71865593922447	4.56515318359405	4.25870412063204	3.6895804282729	3.56706342946968	3.7464879820493	3.91715527687905	-1.05695803466719	0.0415992833541288	0.206528240905596
Merged-chr11-32643685-2	chr11	32643585	32643785	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	1130.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	3.22638881088835	3.60383801740633	4.17174248094055	3.20810609364987	3.46478768809614	3.60937825322845	3.47615519369404	3.93835033228209	0.0681736339160441	0.908426941473885	0.966039998613106
Merged-chr15-41765006-6	chr15	41764905	41765105	+	981.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-23990.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	4.5900669204751	4.6776208210412	4.46754752657233	4.42962453668306	4.42259686598818	4.597922367129	4.48945082482686	4.73483754146977	0.0503640363210251	0.888903632079955	0.958394250474403
Merged-chr16-85162972-4	chr16	85162865	85163065	+	893.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	MTEa|LTR|ERVL-MaLR	10742.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	4.44192116757877	4.48670364940239	4.72579654752735	4.79862738976778	4.2112798777658	3.90268173906414	4.15819620996577	4.22102108803555	-1.22352183181801	0.00264503522052228	0.0289736783566567
Merged-chr12-86801362-3	chr12	86801278	86801478	+	961.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67009.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	4.54328026042909	4.66928468825675	4.09952560784998	3.88247155042914	4.41605694296534	4.67655207156698	4.08249796239779	4.33799552960642	0.146632546321701	0.745159288278312	0.899431814827356
Merged-chr4-99208640-4	chr4	99208541	99208741	+	970.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175029, intron 1 of 10)	RLTR49|LTR|ERVK	14494.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	5.21037174898309	5.53807000710581	5.47712132384251	4.42470791187091	6.14122803839146	6.18596132610169	6.33690332711396	5.88197642019426	1.54035346737334	8.19928399727557e-06	0.000230684130357186
Merged-chr5-96854652-2	chr5	96854540	96854740	+	990.416626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	61255.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	4.93742171610795	5.19290253863925	4.96800265620282	5.28113615406867	3.55948957884719	3.73641636577745	3.93844819503897	3.67932825399527	-3.84166340093193	1.18922887281657e-13	1.5307074491539e-11
Merged-chr9-75547041-2	chr9	75546931	75547131	+	948.5	f0_balb.idr|f0_c57.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	12626.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	4.39630450617974	4.48127971135293	4.19711724339341	4.70963359833192	4.90677667981977	4.57346324878151	4.46636236151573	4.94906144366699	0.578416849316502	0.138203982893135	0.413600027627647
Merged-chr5-114380668-7	chr5	114380613	114380813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026145)	promoter-TSS (NM_026145)	93.0	NR_138602	117146.0	Mm.28792	NM_054093	ENSMUSG00000029577	Ube3b	AI449831|AU020130	ubiquitin protein ligase E3B	protein-coding	4.81003684443488	4.72699575280244	5.32104611534817	4.82649645895439	4.47686982010109	4.78840477457717	4.67279551125216	4.84406830460097	-0.496289695780618	0.16981385167305	0.46259635455762
Merged-chr5-90589111-3	chr5	90589027	90589227	+	729.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252661, intron 12 of 13)	intron (NM_001252661, intron 12 of 13)	27918.0	NM_001252661	622307.0	Mm.389654	NM_001252661	ENSMUSG00000070690	5830473C10Rik	Arg|Gm17754	RIKEN cDNA 5830473C10 gene	protein-coding	4.19378404948178	4.01447141687343	3.81312464390509	3.83384533374129	3.67345301906848	4.23468318453591	3.90313246102751	4.10664146621352	0.0593311094900406	0.896901869042358	0.961411792739385
Merged-chr1-171038124-4	chr1	171038028	171038228	+	928.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	19202.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	4.36894876494096	4.40374762499287	4.07504100026953	3.87148548337289	4.84833476288646	4.45491547552502	4.3925513411899	4.67719996840942	1.00266133563174	0.0138378981295475	0.0991911128865114
Merged-chr12-102395786-4	chr12	102395669	102395869	+	897.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011175, exon 12 of 14)	exon (NM_011175, exon 12 of 14)	44044.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	4.39957269129868	4.49557033750147	5.30658467920808	5.13488412053034	4.54958286411083	4.3774912538868	4.11570047605364	5.06684704757058	-0.661889694084348	0.153461304243681	0.438120574954313
Merged-chr10-17043172-4	chr10	17043087	17043287	+	835.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038020, intron 1 of 8)	intron (NR_038020, intron 1 of 8)	52595.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	4.26856845109754	3.79842625465442	4.09440705328698	4.0068794928242	4.14643334332979	4.01400677354344	4.24952874444169	4.13787355967973	0.24682690461253	0.555663015998944	0.80160086764792
Merged-chr10-60706454-4	chr10	60706351	60706551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9961.0	NM_023370	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	7.80847289472642	7.98636593716369	7.68308469234188	7.81195630212417	7.62356580408404	7.55066443617335	7.83057957079648	7.58287750878303	-0.231677297218335	0.182378283397605	0.478863249620353
Merged-chr12-3098379-2	chr12	3098279	3098479	+	768.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137412.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	3.42368793848174	3.56397509636153	3.47886714375626	3.10946983773477	3.38505200769491	3.42116992961958	3.56628214763902	3.36526071675553	0.144551363212383	0.785335358864495	0.916479414030825
Merged-chr11-51264638-4	chr11	51264550	51264750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358281)	promoter-TSS (NM_001358281)	-988.0	NM_001358281	193286.0	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	5.91207513143453	5.77379248115768	5.4581841189145	5.79201893442321	6.25065083928961	6.13178546466799	5.81398280618962	5.97460652533309	0.496699420945613	0.0566757749581716	0.249383443629189
Merged-chr15-50772774-4	chr15	50772662	50772862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	116287.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	5.87300979177728	6.11053505528925	5.80178905370598	5.32852816866345	6.02660784312731	6.39324644138234	6.0175983557014	5.6945611937242	0.411065124296889	0.17229246483755	0.465607080487109
Merged-chr6-108098678-4	chr6	108098586	108098786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33641.0	NM_178391	74729.0	Mm.56539	NM_178391	ENSMUSG00000034639	Setmar	5830404F24Rik|Etet2	SET domain without mariner transposase fusion	protein-coding	6.10743355966077	5.56946688791087	5.62404353804203	5.77112210040994	5.92114386544927	5.4340475283662	5.69816360458923	5.64664586276176	-0.137518836773613	0.627421656642908	0.841151302397407
Merged-chr10-68732414-4	chr10	68732314	68732514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	8668.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	6.059750678	5.51990547169287	6.56288739373086	6.33797594821211	6.21340483484119	6.17120939470512	6.75687623742165	6.14158225126851	0.254052898426656	0.408792107198198	0.70458903548104
Merged-chr5-86920954-4	chr5	86920866	86921066	+	877.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152811, intron 3 of 5)	intron (NM_152811, intron 3 of 5)	5537.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	4.51826749497722	4.20820124500682	4.88203390554164	5.00995813115484	4.31135377475939	4.56311497548984	4.61732979861511	4.42930512103512	-0.492880660835626	0.226665171633199	0.5352952970033
Merged-chr1-125473401-4	chr1	125473292	125473492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37665.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	6.88219570060394	6.58447619062247	6.7177690573165	6.92288389831418	6.80024941942024	6.65185219271227	6.68358412649688	6.63699810764399	-0.130245244566248	0.52925461551793	0.785565932185397
Merged-chr15-31602622-4	chr15	31602551	31602751	+	840.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007637)	promoter-TSS (NM_007637)	535.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	4.10760846675933	4.0257811735364	4.10822011999718	4.28707747049355	3.99048632871796	4.08255773101998	4.09052931661947	4.1954507727487	-0.155144435698433	0.70547893798534	0.881751258208472
Merged-chr2-19554215-4	chr2	19554087	19554287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027600)	promoter-TSS (NM_027600)	-277.0	NM_027600	70909.0	Mm.158488	NM_027600	ENSMUSG00000026734	4921504E06Rik	4921522E24Rik	RIKEN cDNA 4921504E06 gene	protein-coding	5.71546042225731	5.58035472035143	5.96306360862405	5.70601479042573	5.63943429174391	5.38711763482028	5.63728283279996	5.93830003229718	-0.127195007645292	0.643335274174698	0.849604094409455
Merged-chr5-5860088-1	chr5	5859988	5860188	+	708.5	f0_balb.idr	Intergenic	RLTR28|LTR|ERVL	-110771.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	3.13260033415948	3.3534726524069	3.3036984650497	3.43798393815876	2.9171108017763	3.2435937055876	2.92845754780134	3.13143684519628	-1.04576416676531	0.0744688340837831	0.29413395396832
Merged-chr1-121327884-4	chr1	121327799	121327999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271531)	promoter-TSS (NM_001271531)	125.0	NM_001357251	72999.0	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	7.63033862474586	7.6882857520425	8.11814918935394	7.77687136888822	7.29020524513549	7.307466488587	7.59423958546418	7.35417388201502	-0.565655068641017	0.00362666988521876	0.0370841453469309
Merged-chr12-99641132-4	chr12	99641005	99641205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13131.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	5.21305979229074	4.61932932820819	5.48610270344835	5.79304826108291	5.29755684287398	5.57682291100964	5.74672961328203	5.5091312715245	0.306753987029761	0.407582187328467	0.70380769632612
Merged-chr5-139327959-4	chr5	139327856	139328056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2492.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	6.52214985417409	6.13884803098634	6.37790760327504	6.20387882780234	6.31306611573964	6.05887857195284	5.94739599785662	6.35609981490055	-0.186561183261147	0.442416526904347	0.729114602217242
Merged-chr6-116013876-4	chr6	116013770	116013970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18865.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	6.53086622693118	6.20729227164479	6.41342738593916	6.67842675472884	6.60075351754635	6.45969800111959	6.39819801364474	6.66491514397054	0.0831045834468992	0.715021628941962	0.886010584897636
Merged-chr11-107323438-4	chr11	107323361	107323561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-134080.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	6.90674279989335	6.81583867609614	6.64034842800383	6.57401291164873	6.8416785079677	6.59589102733908	7.06014641552206	6.4131574897769	0.0312902113164514	0.89247613007399	0.95973062109316
Merged-chr15-33186540-4	chr15	33186440	33186640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018755, intron 2 of 8)	L1_Mus4|LINE|L1	103411.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	5.43350157002872	5.45353300529394	6.09757477394093	6.24102191532426	5.93184062698495	5.79189171820365	5.81462697040686	5.88611897080188	-0.0266005392695518	0.930945463846209	0.97518506813215
Merged-chr15-59004273-4	chr15	59004173	59004373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	70463.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	6.1199293499181	6.20239558486209	5.92723124601778	6.56934463333163	5.76010868514809	5.66983440034035	5.89699897089485	6.193957810585	-0.549034257243097	0.046757678258838	0.22233714882663
Merged-chr3-121291700-4	chr3	121291602	121291802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024178)	promoter-TSS (NM_024178)	-38.0	NR_155539	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	8.46199558393382	8.49134557045764	8.35662329476939	8.70131280074456	8.61832635404551	8.70110960789539	8.81894129471732	8.49316647492365	0.183898213831805	0.260699299449103	0.57252299176491
Merged-chr5-25023149-3	chr5	25023063	25023263	+	770.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 2 of 15)	intron (NM_145401, intron 2 of 15)	-27410.0	NM_001310480	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	3.09634408007843	2.77649126607006	3.09681284412056	2.95013265562069	2.74918533980461	2.84866617716854	2.51619886117513	2.74084796557274	-1.2530089666745	0.0633341912678475	0.267081248904207
Merged-chr9-121286073-5	chr9	121285980	121286180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8908.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	4.73978252126954	4.96392827602008	5.11043165042577	4.76498541673083	5.43442901921058	5.31461700550008	4.98588964214914	5.10691516242191	0.64410178261987	0.0450467930574253	0.216999572484737
Merged-chr2-119548254-2	chr2	119548161	119548361	+	1000.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_172857)	promoter-TSS (NM_172857)	554.0	NM_019769	56398.0	Mm.214765	NM_019769	ENSMUSG00000014077	Chp1	1500003O03Rik|AA960066|AI046351|Cahp|Chp|Sid470p|p24|vac	calcineurin-like EF hand protein 1	protein-coding	4.88929080308192	4.85568616828708	4.79862518456713	4.92405452781678	3.7202225183985	3.78649228404791	3.71757952532232	4.09756904540295	-2.71123194882276	1.52321367250644e-09	9.48102689150926e-08
Merged-chr8-13159571-3	chr8	13159471	13159671	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010684, intron 1 of 8)	L1MDb|LINE|L1	410.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	4.91788386304651	5.31689913609036	5.14463308395062	5.09814622923763	5.40721361325746	5.67665420752076	5.31037600914141	5.75813849479008	0.744106220601149	0.0128832196040562	0.0944816606326724
Merged-chr4-155802817-4	chr4	155802701	155802901	+	899.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025570)	promoter-TSS (NM_025570)	-77.0	NM_025570	66448.0	Mm.23825	NM_025570	ENSMUSG00000029066	Mrpl20	2610008D01Rik|4930425I20Rik	mitochondrial ribosomal protein L20	protein-coding	4.02665855339259	4.17438274514416	3.81687810427635	4.13058254262605	4.42043728734024	3.81725620879906	3.80243174366065	4.28679907524163	0.188805858404164	0.683683707876275	0.870394242877558
Merged-chr4-136886287-4	chr4	136886186	136886386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009777)	promoter-TSS (NM_009777)	-109.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	8.4473652258355	8.33395715775536	8.47408207841846	8.02571749611035	8.63570892741992	8.90585223120708	8.57229971957734	8.69728108526555	0.483450479176332	0.00577802406005519	0.052849392774437
Merged-chr3-107771180-4	chr3	107771085	107771285	+	890.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10716.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	4.37800338657002	4.54872565522537	4.37867572622274	4.58664770838931	4.18803694072486	4.31284553156408	4.52577451913341	4.88624543955468	0.0377532913244289	0.924552292638452	0.972099190228437
Merged-chr7-69985956-4	chr7	69985881	69986081	+	758.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	351841.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	4.4084204165513	3.89530340322354	4.3690991047592	4.43412607091115	4.28116038795734	4.32107230022063	4.12984151303288	4.14500202414976	-0.188076691337355	0.650334283984753	0.853226674764141
Merged-chr1-64928713-4	chr1	64928633	64928833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	intron (NM_001039493, intron 2 of 7)	28091.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	6.54373492472721	6.18865896372706	6.30456909051277	6.29536181794157	6.42362866769079	5.95470789797349	6.75103160272074	6.65923043009168	0.219520938645513	0.388560606583698	0.688981838974675
Merged-chr17-47010106-4	chr17	47010009	47010209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146078, intron 1 of 46)	CpG	423.0	NM_146078	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	5.88727558177406	6.31628254622176	5.71927798349507	5.38768420903427	5.73416396226035	6.10725421434876	5.52622425217347	5.92848113036124	-0.0428398091362982	0.892173772558648	0.959609735423941
Merged-chr17-34555698-4	chr17	34555591	34555791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8604.0	NM_010929	18132.0	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	5.4073846586496	5.21257755357496	5.21729809629918	5.29664110606569	5.68599915369718	5.58373269270539	5.64524724001452	5.82730857014598	0.697401204518976	0.00941742115098384	0.0756230392718726
Merged-chr5-137122793-3	chr5	137122687	137122887	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6580.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	3.77035773992832	4.13381399923351	3.54883001159345	3.51351101775456	4.00506469652485	3.72591195452575	3.65025298553394	3.66255423919216	0.0407821119437538	0.935635230906565	0.976639892179174
Merged-chr1-150372112-3	chr1	150372010	150372210	+	836.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145511, exon 12 of 14)	exon (NM_145511, exon 12 of 14)	-20728.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	4.31004384754166	4.4389555451791	4.14963398317443	4.75682444506743	3.14987571955625	3.31385114388119	3.48545939655401	3.49608479799613	-3.78640476002341	2.27966913369282e-09	1.37230937714926e-07
Merged-chr13-24338036-4	chr13	24337939	24338139	+	898.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284519, intron 2 of 17)	intron (NM_001284519, intron 2 of 17)	10635.0	NM_001111110	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	4.02506264532801	4.0069677290953	4.17461707510897	4.10838392281152	4.14904373418477	4.39275048163123	4.36950445109816	4.50056369609356	0.668325083400721	0.0913071859619913	0.330208016948917
Merged-chr2-154285552-4	chr2	154285440	154285640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21704.0	NM_001025574	433492.0	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838	BPI fold containing family B, member 9B	protein-coding	5.23102612376173	4.9628622704051	5.11233566694162	4.71982795847797	4.99755746492162	5.04700629967746	5.26099573145149	4.61851771822223	-0.00679086366147174	0.984472994570721	0.994316877108323
Merged-chr4-88794482-3	chr4	88794389	88794589	+	911.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161609).6	promoter-TSS (NM_001161609).6	2.0	NM_001161609	545654.0	Mm.478784	NM_001161609	ENSMUSG00000095101	Gm13285	limitin	predicted gene 13285	protein-coding	2.89654290863827	2.81739920821373	2.89683268363055	2.38803063773577	4.01323363267993	3.87736492181437	4.10452367504073	4.19518153527245	7.01718493387049	5.93183765532091e-16	1.1259260599149e-13
Merged-chr6-17643014-4	chr6	17642934	17643134	+	938.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 1 of 9)	intron (NM_007604, intron 1 of 9)	6024.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	4.74655669987791	4.70273530032616	4.62820394847435	4.65153621321378	5.15937353667143	4.80309273705594	4.64758486101387	4.7442056753671	0.389782484279355	0.259768539148068	0.571563806638815
Merged-chr13-91809634-4	chr13	91809558	91809758	+	867.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1962.0	NM_145453	69085.0	Mm.52356	NM_145453	ENSMUSG00000021621	Zcchc9	1810019C21Rik	zinc finger, CCHC domain containing 9	protein-coding	3.8167767428721	3.75849286140613	3.46867880722466	3.74595312177291	3.89036099467872	4.17417420706778	3.98869640457023	3.70891310648799	0.685916157940307	0.138657849409695	0.414216102032682
Merged-chr15-83555684-4	chr15	83555588	83555788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001030014)	promoter-TSS (NM_001030014)	23.0	NM_001030014	223722.0	Mm.37560	NM_001030014	ENSMUSG00000048755	Mcat	AI225907|BC025519	malonyl CoA:ACP acyltransferase (mitochondrial)	protein-coding	5.49198807673431	5.31233765858735	5.97023525135133	5.4299102292153	5.21875550778613	5.49187363852082	5.31993241557638	5.62024545750443	-0.263082663198198	0.391699992627077	0.691351450352092
Merged-chr7-78791668-4	chr7	78791560	78791760	+	879.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153793, intron 4 of 5)	intron (NR_153793, intron 4 of 5)	8529.0	NM_001360702	67994.0	Mm.297033	NM_026498	ENSMUSG00000030611	Mrps11	0710005I03Rik|C79873|MRP-S11|S11mt	mitochondrial ribosomal protein S11	protein-coding	3.93921782602207	4.42432368678926	3.93975360704264	4.16528107945747	4.2752392791008	4.35813284040109	4.21282486621868	3.99093954102587	0.195171236029113	0.645658524683616	0.850934142345746
Merged-chr4-19838386-3	chr4	19838296	19838496	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028746, intron 2 of 3)	RMER19C|LTR|ERVK	19669.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	4.26067548246204	3.74997034807743	4.22230522921322	4.76169946663332	3.34370078947265	3.47484886289855	3.41624996960665	3.80114109352588	-2.3725119147228	2.44521157966341e-05	0.000607496387535296
Merged-chr4-43382050-4	chr4	43382104	43382304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 1 of 11)	CpG	222.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	5.03015572161607	5.08535238605886	5.75813488019045	5.01433691159521	5.24751582973791	5.3506352695639	5.30546433027946	5.75398349779393	0.315870224071264	0.353272847926522	0.660145652321071
Merged-chr14-76674122-4	chr14	76674027	76674227	+	778.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3441.0	NR_015485	73272.0	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	3.98948592526194	3.65183624142246	3.89280913007663	4.28313835745363	3.88342921254022	3.85078767378335	3.77287079767027	4.12064965900237	-0.212475218854243	0.653412708608002	0.854997557892684
Merged-chr13-34076905-4	chr13	34076809	34077009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009450, intron 1 of 3)	intron (NM_009450, intron 1 of 3)	1099.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	6.6274743499994	6.63325197165323	6.37758714595237	6.4785659796328	6.50184962300697	6.53596286707012	6.76403191274815	6.47945918511372	0.0611866407554756	0.7743487793728	0.911799562721906
Merged-chr19-56748061-4	chr19	56747967	56748167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25695.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	6.43591103108035	6.54175594632494	7.53579075474167	7.15751110334047	5.87293555554968	5.77934362938377	6.68730921714496	6.11151444619703	-1.20843806990328	0.000249732716577635	0.00435786345508201
Merged-chr16-65351225-3	chr16	65351121	65351321	+	870.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-169408.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	3.58146673278533	3.15554479460664	3.14580089887277	3.13563441032131	3.05944500751334	3.38357232401314	3.42068693014443	3.38037659491133	0.190044500964142	0.735517231386905	0.895618527292593
Merged-chr12-102369427-10	chr12	102369251	102369451	+	921.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001161365, exon 6 of 10)	exon (NM_001161365, exon 6 of 10)	70462.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	3.81112830308081	3.70823031904378	4.45107837410276	4.12559158696306	3.35479924682105	3.50603227039562	3.57231646323077	3.95644004681402	-1.30099211192946	0.0150241634116773	0.104946509075543
Merged-chr8-26696268-1	chr8	26696168	26696368	+	559.0	f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	128155.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	2.88166666518088	2.8570998323184	2.8117267776325	2.79999590905071	3.22657194164241	3.12352088620708	3.11854817827678	3.38465460694481	1.58740164672345	0.00570049403667036	0.0523623003014789
Merged-chr2-163750075-5	chr2	163749950	163750150	+	960.161926	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001272052, intron 1 of 11)	CpG	189.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	3.83604777606522	4.12657062324999	4.28445972735644	3.68997891031505	3.67668012792236	4.20581534935919	3.65186829157577	3.93720426969589	-0.319342766024714	0.5144955660656	0.777082308467222
Merged-chr2-131079092-4	chr2	131079001	131079201	+	927.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011426, intron 8 of 20)	intron (NM_011426, intron 8 of 20)	7664.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	3.8616708295547	4.57373001015027	4.63600401399714	4.53358702978039	4.32000317011722	3.98548832218704	4.35108017021588	4.28117509340885	-0.461937823221291	0.292661057010243	0.605034021984667
Merged-chr18-36700605-4	chr18	36700514	36700714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21-int|LTR|ERVL	-4689.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	7.03003406034741	6.94145910464853	7.23938322220012	7.10994337062772	6.71347697623313	6.78810521765735	6.7323233574767	6.6054777218428	-0.523789850271525	0.00760020049541343	0.0647707475520809
Merged-chr8-25099687-4	chr8	25099596	25099796	+	993.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	2115.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	5.25908019414721	5.2386151218209	4.89274244578566	5.37205378865191	5.04919032202912	4.95027245771317	5.14448607280459	4.96455121524944	-0.3516624071424	0.263083555713526	0.574894066009672
Merged-chr2-148487089-4	chr2	148486975	148487175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43540.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	6.48820077739331	6.19631937594822	6.5820724774673	6.79690272912692	6.07321498611223	6.03730900324175	6.02168167815744	6.36712215042667	-0.62141384762582	0.012468427269704	0.0922565304967229
Merged-chr4-34730175-4	chr4	34730075	34730275	+	947.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027041)	promoter-TSS (NM_027041)	31.0	NM_027041	69329.0	Mm.389548	NM_027041	ENSMUSG00000028294	Cfap206	1700003M02Rik|AU024269	cilia and flagella associated protein 206	protein-coding	4.4711471833657	4.54200787795949	4.82082281864631	4.69772203623153	4.57095203501055	4.50948480658094	4.61725839234359	4.85094152917765	-0.00291490438113267	0.993454762709743	0.997702270136287
Merged-chr15-99825180-3	chr15	99825070	99825270	+	794.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 3 of 10)	ID_B1|SINE|B4	-5021.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	3.28442074753472	3.11308843815561	2.84173675259967	3.19708241455015	2.97303518495273	3.28476801158011	3.16078846079422	3.38586525072839	0.319533145832853	0.588666582021376	0.819814099818031
Merged-chr14-120288650-1	chr14	120288550	120288750	+	642.0	f0_balb.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	12981.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	3.0216098456638	3.35593712427724	2.90339322738884	2.92537320983568	2.61733949872775	2.80970591886967	2.62212025245615	2.83842490339484	-1.62673247563719	0.0169499804677134	0.114347707298965
Merged-chr2-145806888-4	chr2	145806766	145806966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	20750.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	5.41218564333537	5.24112382815761	5.88871114444645	5.41402955001085	5.33761705324132	5.40370935142743	5.52198638409777	5.22300257174337	-0.226296470309027	0.453882934051837	0.737754498942563
Merged-chr6-72742592-4	chr6	72742484	72742684	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	46461.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	3.93215843257544	4.12062933228728	4.91496471385676	4.87209766658498	4.35616961775023	4.7973276620903	5.30355846218368	5.09498112609111	0.861205752753464	0.254393846255784	0.56575328321691
Merged-chr2-148586846-4	chr2	148586749	148586949	+	810.516663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85766.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	4.30081360130492	4.39078290437916	4.76441384328259	4.34839571188113	4.51934663951683	4.52071011921018	4.28272262464111	4.2515344381698	-0.120992914285391	0.755624545540765	0.903851704484357
Merged-chr1-161894298-3	chr1	161894203	161894403	+	943.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17621.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	3.62045481914154	3.2866452725675	3.62097620284495	3.64004227749392	3.34039694043981	3.45006889473193	3.83586593900908	3.51243303843773	-0.0244078133763239	0.962537792699992	0.986628613450163
Merged-chr7-100855384-4	chr7	100855225	100855425	+	872.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	8088.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	3.43584016981729	3.46194024949781	3.31470140825748	3.4622602583988	3.44853895150767	3.81707640489095	3.53323457600304	3.59768711508469	0.576625764046934	0.245058708559926	0.556170860493583
Merged-chr2-20898910-4	chr2	20898788	20898988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128084, intron 3 of 24)	intron (NM_001128084, intron 3 of 24)	68833.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	5.56169540023537	5.57362698712752	5.50767509939394	5.68305863544131	5.88498333982196	5.33432577946991	5.66163428079428	5.41670469446881	0.031717844783671	0.91103476647661	0.966904162861598
Merged-chr16-55781396-4	chr16	55781284	55781484	+	892.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40754.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	4.12139579621857	4.50776026392966	4.00930456078478	4.88329222201036	4.77845421681952	4.35367344075032	4.43466269423229	4.57200216343601	0.224310777841904	0.619255851844121	0.836426662841336
Merged-chr10-84615700-4	chr10	84615603	84615803	+	898.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6734.0	NM_027423	70428.0	Mm.335007	NM_027423	ENSMUSG00000034453	Polr3b	2700078H01Rik|A330032P03Rik|C85372|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding	4.13388251449235	4.28996334553189	3.85063260094627	3.87674225714832	3.83846968199	3.73886623711322	4.15681777060708	3.67960109575457	-0.493222058686085	0.29097197965476	0.603241620011248
Merged-chr15-38535542-4	chr15	38535452	38535652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16286.0	NM_018745	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	7.03931328814651	6.94276365850811	6.48523796619014	6.81317676447715	6.89351386338561	6.6630871545264	6.57101613049712	6.75304503476883	-0.147678568557719	0.502325240201074	0.769603484196222
Merged-chr11-82612198-4	chr11	82612097	82612297	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21156.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	5.0974730201455	5.31744695533189	5.06334919086621	5.03925608410438	5.21117333199592	5.20420409785061	5.42913831233819	5.47854221678853	0.374208807876897	0.206668416240493	0.510673165298272
Merged-chr5-43672662-1	chr5	43672562	43672762	+	1000.0	f1_c57bl6.idr	intron (NM_001359906, intron 4 of 37)	intron (NM_001359906, intron 4 of 37)	10283.0	NM_001359903	231214.0	Mm.44434	NM_172274	ENSMUSG00000039765	Cc2d2a	5730509K17Rik|b2b1035Clo	coiled-coil and C2 domain containing 2A	protein-coding	3.61128298809289	3.68018736163939	4.1497419928648	3.72704610233119	3.0049941981744	3.37628957333636	3.25605541860318	3.38866425656567	-2.10052740143257	0.000430901153129446	0.00683707382492217
Merged-chr7-140128048-4	chr7	140127962	140128162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153783, intron 3 of 6)	intron (NM_153783, intron 3 of 6)	2377.0	NM_153783	212503.0	Mm.486735	NM_153783	ENSMUSG00000025464	Paox	2410012F02Rik|AI118225|Pao	polyamine oxidase (exo-N4-amino)	protein-coding	6.05516307396739	5.78758520403509	6.26198428709212	6.43000137043459	5.57639867014064	5.68497549569333	5.80473834407165	5.80584488134721	-0.723295117035921	0.00760872646009707	0.064813492185645
Merged-chr16-92697414-4	chr16	92697326	92697526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009821)	promoter-TSS (NM_009821)	-97.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	6.2757895437519	6.55998216307859	6.29673589437963	6.71368102832096	6.64045044166036	6.60404838298147	6.48002985071176	6.72149209126411	0.17515591694632	0.439672464126201	0.727425871224001
Merged-chr5-33935826-2	chr5	33935726	33935926	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011914, intron 1 of 10)	intron (NM_011914, intron 1 of 10)	432.0	NM_011914	24116.0	Mm.332320	NM_011914	ENSMUSG00000029111	Nelfa	Whsc2|Whsc2h	negative elongation factor complex member A, Whsc2	protein-coding	4.00702150192141	4.00459498636357	3.91059613393634	3.98120228665725	3.76297243582324	3.86912846233359	3.94331515743176	4.17809589372134	-0.0974050389495495	0.822421815443702	0.932143478460956
Merged-chr10-10459348-4	chr10	10459242	10459442	+	966.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	12972.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	4.71764411250662	4.68720731794342	4.79646226446774	5.25563805438883	4.67582485898788	4.769475532123	4.8108135285927	5.094709008648	-0.133436224244939	0.715356235519886	0.886137406033135
Merged-chr2-116900084-4	chr2	116900007	116900207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040335)	promoter-TSS (NR_040335)	-45.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	5.22673805290003	5.37926830384898	5.16398141449338	5.10736106255218	5.2096678288998	5.2376771616312	5.20191742830524	5.28457003453929	0.0302237952569453	0.917307650219859	0.969501852124064
Merged-chr10-51454593-4	chr10	51454508	51454708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-26004.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	6.76318537723042	6.93583448593276	6.25472669567736	6.56842343431531	6.70784194463153	6.67809709045405	6.61341253260835	6.71696668528685	0.0370456576799887	0.870795833621773	0.951437949242688
Merged-chr7-140956604-4	chr7	140956471	140956671	+	973.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030694)	promoter-TSS (NM_030694)	-610.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	5.05361820938583	4.89676844111778	4.4865612821892	4.63288458865046	4.49951910846311	4.5247916038664	4.55214029056258	4.6511078257864	-0.48156316753512	0.187385003174306	0.485790979783798
Merged-chr6-17629937-4	chr6	17629850	17630050	+	904.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7060.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	4.50679857914269	4.30951378635118	3.87123059212434	3.93907287345212	4.76549272198214	4.47252069031799	4.66437086086286	4.20047742641325	0.880889605119093	0.0396029647567079	0.200476331325939
Merged-chr6-122952596-4	chr6	122952488	122952688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204241)	promoter-TSS (NM_001204241)	-56.0	NM_153197	73149.0	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	7.40974261989628	7.39802936413511	7.75653420504033	7.79336603013332	7.07630732133437	7.28245907968633	6.97926927097192	7.27287953791125	-0.609744396512039	0.00227991659465588	0.0258823258837338
Merged-chr6-67170481-4	chr6	67170414	67170614	+	953.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96465.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	4.53669928274877	4.37493407470936	4.53743747441906	4.39791905127224	4.29451056870634	4.41273913507237	4.06782230918663	4.53445195961818	-0.287367353014027	0.454978576771786	0.738690269748384
Merged-chr17-35739794-4	chr17	35739697	35739897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32653.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	5.98278591632436	6.83624103269916	6.57632675979747	6.59704203121285	6.3353406297952	6.55465871269742	6.15440471303076	6.0957481287113	-0.360190528594711	0.17375040747436	0.46792963502147
Merged-chr12-113074335-6	chr12	113074242	113074442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361919)	promoter-TSS (NM_001361919)	-160.0	NM_001361919	75671.0	Mm.23377	NM_029381	ENSMUSG00000012211	Tex22	1700028O09Rik|AV210422|Tep22	testis expressed gene 22	protein-coding	5.09517748324296	4.62297785401125	5.03622272289906	4.86432268691787	4.53883943140549	4.44464322752464	4.88329833488107	4.83405500286746	-0.467738121502162	0.192233167344611	0.491824448203475
Merged-chr11-51638090-4	chr11	51637993	51638193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2197.0	NM_025346	66089.0	Mm.288183	NM_025346	ENSMUSG00000001054	Rmnd5b	0610039K22Rik|Gid2	required for meiotic nuclear division 5 homolog B	protein-coding	6.26074022280739	6.22427914569457	6.14937744541937	6.43762075025178	5.94006725025554	5.71130385490918	6.01635228702032	5.78450224890002	-0.638859222327758	0.00836431289309492	0.0692606725427464
Merged-chr9-57835163-4	chr9	57835078	57835278	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019689)	promoter-TSS (NM_019689)	-944.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	3.55236997715651	3.96834405943963	3.834747538126	3.75053017819649	3.92965574053455	3.84823398781909	3.76779131649508	4.10492311061036	0.381970311561766	0.400390641634866	0.698199689340163
Merged-chr6-83038826-4	chr6	83038745	83038945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013586, intron 4 of 13)	intron (NM_013586, intron 4 of 13)	4621.0	NM_013586	16950.0	Mm.380433	NM_013586	ENSMUSG00000000693	Loxl3	Lor2|Loxl2	lysyl oxidase-like 3	protein-coding	6.31880721615767	6.73298688169496	6.12320138581004	6.53152151164257	7.10964452697942	6.93757033402146	7.19598098063732	6.91695671966564	0.833838810278901	0.000218019097552695	0.00390596057002347
Merged-chr8-92818348-4	chr8	92818237	92818437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8960.0	NM_008610	17390.0	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	6.84877853193711	6.89767046013896	6.78002981974049	7.10543003310378	6.89001951898529	6.65021852596671	6.88121008062523	6.68584661924326	-0.196235299555359	0.340363448570607	0.649455684748532
Merged-chr18-53857823-3	chr18	53857728	53857928	+	873.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-4285.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	4.06031748772713	3.80791339360387	3.74321949951126	4.01519040952002	3.12918423462981	3.6367796717506	3.77745761162896	3.51702894654816	-1.20887202612412	0.023592504625341	0.142683581956413
Merged-chr12-8507536-4	chr12	8507445	8507645	+	949.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7536.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	4.76441262730279	5.14985008278287	5.09263280270452	5.16401506732874	4.92314822473967	4.81560863643688	4.78353305465555	5.44864567970144	-0.0741940062592163	0.831275572712782	0.935322338382222
Merged-chr9-120034526-4	chr9	120034413	120034613	+	907.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10915.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	4.77489964863779	4.49374753778075	5.2152209820711	5.4165981684016	4.89705224003581	4.6428220359177	5.21702375210721	5.02755700842881	-0.148941928562039	0.704370034746072	0.881223937553884
Merged-chr10-121367291-4	chr10	121367170	121367370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	intron (NM_029364, intron 1 of 13)	2180.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	5.06733873238558	5.07273430997871	5.19911233475529	5.49272163609504	5.10730387698871	5.24275603553296	5.20400661054279	4.95707996939816	-0.205270677031983	0.51527995636923	0.77746883119676
Merged-chr4-128667345-4	chr4	128667267	128667467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	12665.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	6.17278031974075	6.00083175290291	6.01141651596712	5.50746871147662	6.18507495502152	6.0746858093341	6.04370104052537	6.22527850897388	0.332670480733885	0.212015416278432	0.516816620386388
Merged-chr4-32248508-4	chr4	32248407	32248607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168928.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	5.89576098308689	5.65766591499871	5.91801400708488	5.6789300607862	5.67250711312263	5.55284954579344	5.65908238942997	5.46403735236692	-0.312818884232755	0.234807822905557	0.544676096678985
Merged-chr6-51580495-4	chr6	51580401	51580601	+	862.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 5 of 6)	intron (NM_001361577, intron 5 of 6)	35208.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	4.625236264823	4.56196163216818	4.45875539896162	4.53459772537875	4.89033123400418	4.4468027696511	4.88173293680311	4.49980729219332	0.349544831551136	0.333147292960942	0.64399149963087
Merged-chr10-127666973-4	chr10	127666869	127667069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045171)	promoter-TSS (NR_045171)	-154.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	7.33981034404317	6.98102805733978	7.58278377562747	7.31404210256902	7.78489419878292	7.86949701793802	8.02670911211623	7.67882215048431	0.695668133642974	0.000413029841248634	0.00660504405082825
Merged-chr6-13052270-3	chr6	13052177	13052377	+	866.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17482.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	3.66277839625995	3.47544309611387	3.6079132165054	3.17561886684655	4.0218870930537	3.66944928963052	3.64823619865889	4.11274191159733	1.24128927415807	0.0141744788786735	0.100791731479031
Merged-chr5-122778998-4	chr5	122778920	122779120	+	947.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 1 of 16)	CpG	390.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	4.67004981880559	4.52855891846679	4.47680885512596	4.34917859698043	4.3471898738872	4.42580490859067	4.4564116880503	4.70310166350028	-0.0330688341705597	0.929099548794216	0.974317157505369
Merged-chr18-60727612-4	chr18	60727504	60727704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348103)	promoter-TSS (NM_001348103)	-38.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	5.35571566397101	5.23395919769712	5.1066369383636	5.19818520467829	5.35954670402873	4.79565261382584	5.60621440967973	5.32424238599458	0.153689588452911	0.63089663952554	0.843094226067586
Merged-chr3-116861848-4	chr3	116861758	116861958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009146, intron 1 of 16)	intron (NM_009146, intron 1 of 16)	178.0	NM_009146	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	5.61618413484833	5.98908449167825	5.96483110602353	5.83874262598053	5.79799499714929	6.33816527797996	5.79765863069086	5.91640358871932	0.179925015874243	0.501529319378025	0.7692646023024
Merged-chr13-6648814-4	chr13	6648726	6648926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291071)	promoter-TSS (NM_001291071)	-55.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	7.89547970378251	7.61805717331014	7.75969958918579	8.11410077462372	7.84430395908286	7.67932245024953	8.33183386974301	7.81720060129231	0.0995624001482807	0.637008174933121	0.846525613001094
Merged-chr10-21295938-4	chr10	21295847	21296047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145209)	promoter-TSS (NM_001145209)	-32.0	NM_001042593	56422.0	Mm.25527	NM_019702	ENSMUSG00000019977	Hbs1l	2810035F15Rik|AI326327|eRFS	Hbs1-like (S. cerevisiae)	protein-coding	7.09221776266006	7.40287631780024	6.96982388655742	6.72297789585945	7.08317383806008	7.09400369355378	6.97282048611689	7.21161724606307	0.0424280144760823	0.847411811314699	0.94229862509259
Merged-chr14-54474803-3	chr14	54474687	54474887	+	951.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1313.0	NM_080726	140743.0	Mm.274727	NM_080726	ENSMUSG00000022176	Rem2	AW411893	rad and gem related GTP binding protein 2	protein-coding	4.00424814589542	4.07888783119265	3.78705677973738	4.19111655579211	2.90699630771794	3.16214973704425	3.0368595251889	3.26888713717456	-4.07792594429094	7.45956124876388e-08	3.27755623534422e-06
Merged-chr6-143114682-4	chr6	143114567	143114767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153819, intron 7 of 8)	ORR1E|LTR|ERVL-MaLR	-14515.0	NM_001109688	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	6.7419367600773	7.00376928181836	6.92885083660134	7.52432207473722	7.11649676435681	6.92095336938103	6.99536680662053	6.91060263929817	-0.155040133098327	0.512396214980141	0.775817701566463
Merged-chr13-58457159-3	chr13	58457039	58457239	+	883.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53796.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	3.64979399168784	3.52678963192367	3.70947994161298	4.17348840389643	3.96543489180489	3.70741019610324	4.41819257320979	4.06029649079359	0.69052933802039	0.185325419039173	0.483227538833749
Merged-chr9-72991641-4	chr9	72991545	72991745	+	865.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359295, intron 1 of 9)	intron (NM_001359295, intron 1 of 9)	6141.0	NM_001286544	72278.0	Mm.268475	NM_028181	ENSMUSG00000034563	Ccpg1	1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e	cell cycle progression 1	protein-coding	4.57291821917846	4.56015727483017	4.71435425752426	4.45192057560457	4.1428584144319	4.36228051260954	3.95163239261734	4.36951809878923	-0.854549733985911	0.0306403816784096	0.169605080292987
Merged-chr7-91457402-3	chr7	91457305	91457505	+	958.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011807, intron 2 of 22)	intron (NM_011807, intron 2 of 22)	366619.0	NM_011807	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	4.57823974170978	4.37249942066564	4.27020717526001	4.51314620946346	3.99842367084797	4.20754973947341	4.11409462468796	3.73646236307743	-1.06314950918469	0.0115613474515501	0.087507991307304
Merged-chr10-118810862-3	chr10	118810772	118810972	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58031.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	5.80437053787467	5.81574238423164	5.75602917987942	5.61544749175526	5.9391397634035	5.98054975214139	6.03566129303171	5.87181314289488	0.353356501945215	0.147892257843718	0.429350804350191
Merged-chr2-163928633-4	chr2	163928548	163928748	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9965.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	6.48138596123792	6.26495054145456	6.7365291626256	6.71047813414456	5.1294641113959	5.28769254411939	5.40900498257877	5.49802454942054	-2.00296251111787	1.22306820700094e-13	1.56576927888705e-11
Merged-chr1-186575884-4	chr1	186575793	186575993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17212.0	NR_131158	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	7.63629756649429	7.48399334628368	8.02760449605263	8.17520102409988	7.58945488548025	7.31315355157366	7.78401267208053	7.77113873716915	-0.313718667218307	0.155850057788086	0.441705659838286
Merged-chr8-84745758-4	chr8	84745641	84745841	+	923.962524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	28628.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	4.45433401996681	4.70817367867652	5.24966460851471	4.95296178240876	4.67765984117645	4.53810021438797	4.7308076334782	4.85933857098241	-0.352120813769556	0.34415771129201	0.652638916532676
Merged-chr4-119195795-2	chr4	119195695	119195895	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038998, intron 1 of 2)	MIR3|SINE|MIR	270.0	NM_001038998	69216.0	Mm.36697	NM_024462	ENSMUSG00000028643	Svbp	2410005K17Rik|AI851162|Ccdc23	small vasohibin binding protein	protein-coding	3.03958279588646	3.26436727711823	3.17035365424387	2.89485209132161	3.28999879956068	3.40426674316717	3.15889590566208	3.63266499998301	1.08304153731685	0.0543224212797572	0.243369302990001
Merged-chr15-101266015-4	chr15	101265918	101266118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010444)	promoter-TSS (NM_010444)	-828.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	6.62389475073223	6.86052501225343	6.60925012556497	6.35551426044843	6.82802317209069	6.86256156270649	6.51050962379716	6.80947690835861	0.21121426698007	0.346511089876696	0.654729443506499
Merged-chr11-97628997-3	chr11	97628813	97629013	+	786.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175332, exon 1 of 1)	exon (NM_175332, exon 1 of 1)	803.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	3.373057018997	3.25345935983871	3.64359719794899	3.01771584958361	3.3911589626705	3.6074458260442	3.17027119964294	3.94235069523389	0.73652471369348	0.206335920003276	0.510258987941256
Merged-chr17-10558884-3	chr17	10558789	10558989	+	923.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 4 of 4)	Lx8|LINE|L1	102673.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	4.10074660773538	4.16056662355113	5.0948674092278	4.96625384958964	4.05783130479893	3.86265668672327	4.13591475121384	4.38596673961894	-1.26062800068401	0.0100415649187338	0.0791438987211331
Merged-chr4-139602846-4	chr4	139602755	139602955	+	858.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	-20039.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	4.21928163354736	4.16311518073153	4.0228611432902	3.74138029230309	4.32712337693888	4.48006914095564	4.15500453466436	4.60741280086759	0.91475212349921	0.0290817471233244	0.163980258305038
Merged-chr1-183297002-5	chr1	183296896	183297096	+	974.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181732)	promoter-TSS (NM_181732)	-64.0	NM_181732	108909.0	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	5.70357816383051	5.80437791366672	5.73120240191149	5.32865294604582	5.95379697636956	6.18888923703571	6.22939954013258	6.43420777381808	0.909965121000967	0.00066678032957345	0.00970964752019406
Merged-chr13-12302450-4	chr13	12302362	12302562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033268, intron 6 of 20)	intron (NM_033268, intron 6 of 20)	38270.0	NM_033268	11472.0	Mm.37638	NM_033268	ENSMUSG00000052374	Actn2	1110008F24Rik	actinin alpha 2	protein-coding	5.44979328266006	5.19711372094591	5.15313879270504	5.12708840161581	5.27340458830514	5.45414825620906	5.19288091648327	5.33623664641008	0.157436410378477	0.589824485447311	0.820591787843597
Merged-chr10-121370209-4	chr10	121370075	121370275	+	878.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	intron (NM_029364, intron 1 of 13)	5085.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	4.12067798325396	4.11362222568189	3.80661297179753	4.34024088734709	4.12496089254066	4.19763018843682	4.27542514923383	4.071430278647	0.105188828949092	0.805318653601849	0.925171083261684
Merged-chr3-7366485-3	chr3	7366386	7366586	+	983.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008862)	promoter-TSS (NM_008862)	-118.0	NM_008862	18767.0	Mm.3193	NM_008862	ENSMUSG00000027499	Pkia	AI415001|PKIalpha	protein kinase inhibitor, alpha	protein-coding	4.85477149692042	4.85905431624782	5.47484077156919	5.22604284899464	3.3654115848589	3.77251692598991	3.69885336144606	3.6365454754537	-4.6475147724637	2.12481931077895e-13	2.59421121306921e-11
Merged-chr11-79278768-4	chr11	79278656	79278856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24061.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	7.28759163639461	7.34028894215011	7.15064771565386	6.90037841861644	7.08289823353181	6.92045690845898	6.94720077588995	6.91160667012938	-0.272061468600102	0.182177078249202	0.47878218634963
Merged-chr12-116281138-4	chr12	116281016	116281216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028731)	promoter-TSS (NM_028731)	-106.0	NM_028731	52635.0	Mm.273755	NM_028731	ENSMUSG00000021171	Esyt2	2410017M09Rik|4921504I16Rik|CHR2SYT|D12Ertd551e|Fam62b	extended synaptotagmin-like protein 2	protein-coding	8.37751685616148	8.28140780247983	8.45213853611346	8.4337237322229	8.53198339929809	8.56735803973264	8.65219899152788	8.53965693025912	0.231886376492402	0.113668290183467	0.372864889025715
Merged-chr7-121075903-6	chr7	121075828	121076028	+	990.0277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021554, intron 4 of 4)	intron (NM_021554, intron 4 of 4)	-1398.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	4.79075492115742	5.07344979100381	5.06902199718126	4.8099281330257	5.03833404811613	4.9270672720784	4.84372014976288	4.74927239233181	-0.0684281199637282	0.834902676380171	0.937121148025927
Merged-chr2-170307672-4	chr2	170307589	170307789	+	906.2416380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48672.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	4.73103715535782	4.30948746062736	4.35974830848219	4.68506150407746	4.73979017837353	4.58284440978654	4.74421941731861	4.6549375950898	0.30376050757141	0.403831791222157	0.701030243333461
Merged-chr15-78607750-4	chr15	78607664	78607864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 5 of 12)	intron (NM_028195, intron 5 of 12)	10717.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	7.89882391628425	8.01715147861315	7.9072852270488	7.79628342893222	7.80070987797339	7.99598027844681	7.79603055376582	7.71827989167206	-0.0957666759816927	0.565363208285318	0.807520724857339
Merged-chr2-104507257-4	chr2	104507155	104507355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-12766.0	NM_001145824	15259.0	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	5.23242621229473	5.07283539282418	4.93218995958567	5.15410954483497	4.9652315880001	4.9094429562032	5.05014821779352	5.58886054779938	0.0945783869298422	0.77656176392605	0.912932991254018
Merged-chr17-64941761-4	chr17	64941672	64941872	+	969.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-105701.0	NM_030031	78057.0	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	5.9737705562299	5.76148199908073	5.73965234815006	5.97869885980721	5.36524275560954	5.09470423817567	5.53500013619373	5.18517439439381	-0.961055992305462	0.000631317815677742	0.00929017382719165
Merged-chr4-129497281-4	chr4	129497187	129497387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6097.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	6.11289554487899	6.15405701605487	5.71100028230349	5.14382839156717	5.96593422118819	6.12551182227245	5.94147058008029	5.80814008771441	0.216516753991837	0.498444687103605	0.767631774426384
Merged-chr10-99451394-4	chr10	99451277	99451477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157794.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	6.24610472896618	5.96662309035848	5.50859738593112	5.85651060166817	6.22721078697265	5.88814081675587	5.94469409161109	5.83366875725676	0.117988069470737	0.669043534191572	0.863357017638244
Merged-chr3-86960712-1	chr3	86960612	86960812	+	895.0	f0_balb.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-25874.0	NM_001289449	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	2.83111542368378	2.51378243388978	2.77828128665304	2.6388122740492	2.24701871844937	2.34946502003853	2.53044773316207	2.24651708047025	-2.14362357118907	0.00852006088295539	0.0702071560069324
Merged-chr18-50229390-2	chr18	50229290	50229490	+	862.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48979.0	NM_001004061	225497.0	Mm.329435	NM_001004061	ENSMUSG00000035420	Fam170a	Gm93|Znfd	family with sequence similarity 170, member A	protein-coding	3.23990508286779	3.98711718563463	3.35933052008007	3.21418995657589	3.12340318005738	3.35516891222208	3.28856247222665	3.03819624439673	-1.01886582964151	0.0931437192837733	0.333867879097614
Merged-chr17-84169529-4	chr17	84169442	84169642	+	877.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	18405.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	4.23783953850671	4.42199931085366	4.28080157030551	3.50612087805966	4.48865572954393	4.18039355785706	3.98641800001934	3.71564161671463	-0.0710067344501037	0.891441936899224	0.959385213525176
Merged-chr6-86404252-4	chr6	86404152	86404352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011585)	promoter-TSS (NM_011585)	33.0	NM_001164078	21841.0	Mm.333219	NM_011585	ENSMUSG00000071337	Tia1	2310050N03Rik|AI256674|TIA-1|mTIA-1	cytotoxic granule-associated RNA binding protein 1	protein-coding	7.3881936195488	7.49306483796345	7.09049858418266	7.2632635722821	7.38160483302436	7.46396446051207	7.56863506941941	7.26020638719195	0.141049187716738	0.455707552232329	0.739098317505068
Merged-chr4-144995985-3	chr4	144995885	144996085	+	907.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 67 of 69)	intron (NM_001276465, intron 67 of 69)	102848.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	4.06959964057171	4.04137874686936	4.07024933890005	4.34897231471236	3.56659869986163	3.60474613596326	3.40837207995467	3.67130412355265	-1.76889962319639	0.000273894436486242	0.00471342450540128
Merged-chr14-103376955-4	chr14	103376859	103377059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30159.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	5.50544479425326	5.19885531464914	5.58641216410185	5.72365796928264	5.7071063963876	5.37465630605305	5.58363417316754	5.41720960591197	0.0118245815715788	0.967653240443055	0.988556045979739
Merged-chr18-55288757-3	chr18	55288662	55288862	+	779.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-296171.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.01551863437279	3.01912989686803	3.28838243070852	2.98617936964825	3.17050058087467	2.92577460800098	2.94391673849124	2.88707056013915	-0.346628034735724	0.563243898942298	0.806192311987247
Merged-chr8-112012069-3	chr8	112012008	112012208	+	947.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130868)	promoter-TSS (NM_001130868)	749.0	NM_020584	57321.0	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding	3.32368619347983	3.45756631661234	3.74362564968356	3.42452493769306	2.95348672879639	3.43967338688683	3.42874626864983	3.74118595125903	-0.253275781450092	0.664696719401953	0.861062110279118
Merged-chr11-96830064-4	chr11	96829954	96830154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130450)	promoter-TSS (NM_001130450)	-86.0	NM_008686	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	8.60324916418166	8.62576532022859	8.45629051812405	8.33058524403689	8.56848639406424	8.47717394941082	8.50519205528335	8.42515825742033	-0.0092825292164897	0.952469169597602	0.983110341498473
Merged-chr19-37546484-3	chr19	37546375	37546575	+	688.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3943.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	3.36873773034136	3.09331634902714	3.36927125039221	3.22904916982476	2.7006087580554	2.87632483260366	2.83404104324571	3.0408114309364	-1.80772810193078	0.00500059927800191	0.047553461056633
Merged-chr11-70374538-4	chr11	70374440	70374640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEf|LINE|L1	-22509.0	NM_009660	11687.0	Mm.4584	NM_009660	ENSMUSG00000018924	Alox15	12-LO|12/15-LO|15-LOX|Alox12l|L-12LO	arachidonate 15-lipoxygenase	protein-coding	6.10375629848863	6.34336778724373	5.8877222222661	6.13205398596045	5.69616651916762	6.01608650552774	6.01263166319915	5.81047340482263	-0.393039368508613	0.119447835647735	0.38243202687831
Merged-chr1-157076400-4	chr1	157076277	157076477	+	831.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32273.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	3.57086853479252	3.49743131138929	3.57133304461671	3.59686905762006	3.63030261261982	3.8546615105112	3.94980891741174	3.92236210536808	0.835414616534881	0.0720202568516264	0.288368670891709
Merged-chr2-166996364-4	chr2	166996278	166996478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011490)	promoter-TSS (NM_011490)	-79.0	NM_001109905	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	8.16765182683249	7.87481064412205	7.74663200277952	7.64844091050168	7.91006900989192	7.79647236064834	8.21920072876289	7.53001115974403	0.026346251640404	0.900754200989322	0.963206010470881
Merged-chr10-6717348-4	chr10	6717250	6717450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TAAG)n|Simple_repeat|Simple_repeat	-41243.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	7.86883141758234	8.09617911990022	7.48711415231544	8.10355652638736	8.15573017873039	8.19604456844706	8.08209993919149	7.91624251185526	0.220324058958563	0.258661355226307	0.570489393947544
Merged-chr1-64621460-4	chr1	64621345	64621545	+	962.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger5b|DNA|TcMar-Tigger	-4277.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	4.58725185549296	4.93962493873864	4.86528283409738	5.04387883597468	4.95836008972691	4.67560894528226	4.8420863889849	4.82596032330378	-0.0983215131885155	0.772456705312583	0.91092787865015
Merged-chr16-94572653-4	chr16	94572546	94572746	+	929.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	1739.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	4.11109567781236	4.31811899009847	4.2605735486319	4.30348257026225	4.46471119927981	4.89362543678356	4.14564317296336	4.34843391479302	0.545808887146638	0.179545026365871	0.475758894784318
Merged-chr3-103852724-4	chr3	103852623	103852823	+	872.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142960, intron 3 of 3)	intron (NM_001142960, intron 3 of 3)	-7072.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	4.33830112176963	4.80480880610038	4.58486922040024	4.41028141644045	5.43993037980658	5.0770167529676	5.07300411588383	5.03322427611236	1.27962421961675	0.000196910833317568	0.00359106231224985
Merged-chr17-7868832-4	chr17	7868736	7868936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57164.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	5.78781949582645	5.88724511043016	5.39429195687278	5.95393047508186	5.88397558527116	6.01090795319102	5.99978181158446	5.57446841623783	0.146080849541316	0.597397993518716	0.825256992211092
Merged-chr7-134556209-4	chr7	134556105	134556305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-114482.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	7.13617362251438	6.73936740603421	7.10453704853608	7.3057753166448	6.33624435010364	6.87923021595875	6.69775883279509	6.44376340874205	-0.700445203309564	0.00280006487048809	0.0302712359381032
Merged-chr6-113061356-4	chr6	113061244	113061444	+	858.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008188, intron 5 of 9)	intron (NM_008188, intron 5 of 9)	15042.0	NM_008188	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	4.15691049464646	4.24023559346194	4.10645865867348	4.63684194045876	4.28991703184574	4.42735171732639	4.59355086831605	4.29704856444962	0.183776833368372	0.658277082293397	0.857745523643216
Merged-chr10-43919200-4	chr10	43919068	43919268	+	980.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152603, intron 4 of 7)	intron (NR_152603, intron 4 of 7)	17361.0	NM_130892	170728.0	Mm.390253	NM_130892	ENSMUSG00000019864	Rtn4ip1	D10Ertd690e|NIMP	reticulon 4 interacting protein 1	protein-coding	4.91930987408445	5.41792807047	4.99141748240935	5.26060722340596	4.79137711101253	4.90101171288739	5.00122871616652	4.84145289988904	-0.570245385224763	0.0811725122565393	0.309190333623542
Merged-chr9-13560175-4	chr9	13560086	13560286	+	867.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59803.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	4.03637070331669	4.14977318220199	4.03696255637864	4.13064127104647	4.18138545879795	3.69532993739342	3.92002325810342	4.4451301458099	0.010477391972257	0.981413736655877	0.993361854006063
Merged-chr10-81285864-4	chr10	81285769	81285969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282096)	promoter-TSS (NM_001282096)	-88.0	NM_001282096	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	7.09633395123487	7.31238830617572	6.86331935632696	6.95318868591031	7.12358623646656	7.5110598240846	7.00126265018402	7.13916161049891	0.189264262930542	0.373615893408487	0.677129891634905
Merged-chr10-4386967-7	chr10	4386865	4387065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033466, intron 1 of 2)	CpG	510.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	8.31886860173405	8.35206545766656	8.39060678970176	8.2268610882921	8.40512516476158	8.50907482876774	8.70185755015558	8.17963883309264	0.179171574264611	0.292395286966943	0.604744361155109
Merged-chr18-42512257-2	chr18	42512157	42512357	+	807.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360881, intron 1 of 20)	CpG	770.0	NR_110344	56070.0	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	3.30512754616898	3.35941278684681	3.98716533994705	3.4380921346653	3.52805331577382	3.41988230066279	3.35605604454363	3.59043532642632	-0.224637183745421	0.678946933455827	0.868233840147542
Merged-chr15-83036356-4	chr15	83036238	83036438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2941.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	6.33161401705163	6.11562720341632	6.19920606848468	6.47824806249245	6.15958829492803	6.2049624262313	6.60260988856234	6.39853341385807	0.0730741978421046	0.761224710580019	0.906512173824769
Merged-chr5-77252705-1	chr5	77252605	77252805	+	680.0	f0_c57.idr	Intergenic	Lx8|LINE|L1	-12789.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	3.36165766125676	3.08164358273455	3.18098870381337	3.06306408921681	3.64022679229702	3.4191266813083	3.23249391423343	3.6598725215709	1.19380656582345	0.0261240743934141	0.153003251140781
Merged-chr4-45084630-4	chr4	45084517	45084717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024142)	promoter-TSS (NM_001024142)	-13.0	NM_001024142	269529.0	Mm.389552	NM_001024142	ENSMUSG00000048232	Fbxo10	FBX10|Gm634	F-box protein 10	protein-coding	6.95243275048708	7.18620466394402	6.99174417536714	7.29140117402632	6.67624899630423	6.95124383560301	7.17314069479754	6.52363184997846	-0.376119894065752	0.0957792047159929	0.338959140600361
Merged-chr13-112787191-4	chr13	112787093	112787293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-13584.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	5.56620954677787	5.70136304563331	5.75465529449977	5.7777793280088	6.12877626934327	6.0482654701975	5.75030409100397	6.06010598095185	0.484836842653675	0.054237675266833	0.243247298372144
Merged-chr6-50223213-3	chr6	50223100	50223300	+	686.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018769, intron 5 of 9)	ORR1E|LTR|ERVL-MaLR	38569.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	3.52970603536316	3.3485040858774	3.5804674659795	3.38627644337028	3.22302690232447	3.14861014990479	3.61275268088069	3.47592432188535	-0.288524721146372	0.590084865896867	0.820738632318576
Merged-chr7-109616547-4	chr7	109616469	109616669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037617)	promoter-TSS (NR_037617)	-1.0	NR_037617	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	5.45196066192426	5.51566547035432	5.45290677017854	5.45815113440928	4.96977310179755	5.59858230322171	5.28021232213364	5.4211412217066	-0.262390253652283	0.37945123868777	0.6820084441689
Merged-chr6-122565619-4	chr6	122565522	122565722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	11813.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	6.3690917040192	6.80302868031497	6.02760833535582	5.84948724291228	6.26952153397811	6.56345909336791	6.53227876356912	6.1125425400081	0.10462548064719	0.719723974175068	0.888022825078143
Merged-chr5-148956269-4	chr5	148956184	148956384	+	971.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6034.0	NR_040686	71473.0	Mm.90306	NR_040686	ENSMUSG00000079069	8430423G03Rik	-	RIKEN cDNA 8430423G03 gene	ncRNA	4.97714385901002	4.62069641567041	4.38320254083664	4.66726822213218	5.16173527731786	5.15148323656987	5.22610646465743	5.1930273107727	0.996299995686484	0.00241747786489873	0.0270471010602997
Merged-chr7-80203182-4	chr7	80203092	80203292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	4751.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	6.02577763533635	5.80255287659354	6.75547165388796	6.72338939120884	5.90126050035201	5.84866958152113	6.18226812523464	6.26649460229634	-0.518959313187185	0.0910972782549425	0.329806071466875
Merged-chr3-96273741-3	chr3	96273624	96273824	+	993.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4024.0	NM_175666	319189.0	Mm.297655	NM_175666	ENSMUSG00000105827	Hist2h2bb	H2b-616	histone cluster 2, H2bb	protein-coding	3.98044847530384	4.08651402164476	4.06575685895845	4.46068704874993	3.32502133905707	3.27648996311961	3.15021561171553	3.30882328331213	-3.19184407802735	1.89226011633274e-07	7.66586128744724e-06
Merged-chr9-66895852-2	chr9	66895763	66895963	+	663.5	f0_balb.idr|f0_c57.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	23842.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	4.29290494568957	3.89076696727536	3.29661309047521	3.56860102210854	3.81587373706802	3.80264246286247	3.77391762809584	3.78761116194159	-0.0459819788152309	0.93176670258855	0.975355482860531
Merged-chr16-92443837-3	chr16	92443728	92443928	+	945.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	22341.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	5.02475420884517	4.593240503639	5.59302594150869	5.9370406598706	3.59036963268048	4.07211251612244	4.04769911282893	4.06268325739657	-3.4153111038138	2.64639727029361e-11	2.2265710555819e-09
Merged-chr6-135170039-3	chr6	135169944	135170144	+	649.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1829.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	3.16008573024834	3.04425879172852	3.5891896841851	3.30852986536292	2.78631594021654	2.8753507515366	2.83293548555192	2.90999443167236	-1.95668270252211	0.00269395959420417	0.0293778803429498
Merged-chr3-8964123-4	chr3	8963960	8964160	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025261)	promoter-TSS (NM_001025261)	86.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	4.23633231186399	3.93837094713601	4.39603698425756	4.55485471136732	3.75048465732779	3.90648221218567	4.03776087595489	4.00293065257617	-1.02551073780571	0.0218853425062236	0.136014737994454
Merged-chr8-88200247-6	chr8	88200107	88200307	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164497, exon 2 of 13)	exon (NM_001164497, exon 2 of 13)	994.0	NM_001164498	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	4.73475517815353	4.82502631446501	4.93959832124468	4.56840661125042	4.52623064965156	4.53047363542846	4.51558709548802	4.73238836960486	-0.397874643579477	0.262185285232811	0.574115106927125
Merged-chr11-62281457-4	chr11	62281370	62281570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029704)	promoter-TSS (NM_029704)	-3.0	NM_028360	72795.0	Mm.489722	NM_028360	ENSMUSG00000042298	Ttc19	2010204O13Rik|2810460C24Rik|AI505442	tetratricopeptide repeat domain 19	protein-coding	6.91059900752232	7.09811760611382	6.54776009929322	6.78185068131161	7.01089563204561	7.22497564389601	6.82317803672069	6.92001018349337	0.211459982439404	0.328549106233533	0.640040419086886
Merged-chr14-109485044-4	chr14	109484989	109485189	+	860.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-570850.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	3.84045166481027	4.07811364338593	3.79262395039821	4.26943901357813	3.63683492762017	3.36597642962688	3.44493355547293	3.25005422529646	-1.82658854445474	0.000810697690829775	0.0113597515697423
Merged-chr6-136721210-4	chr6	136721079	136721279	+	958.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145067, intron 16 of 25)	B4A|SINE|B4	-59286.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	4.0946974827634	4.15406841104533	4.33320828130258	4.26463264132055	4.40805815811353	4.32230486775638	4.61768061791474	4.41445386196407	0.53831089171503	0.157409004625154	0.443928085673017
Merged-chr11-118739042-3	chr11	118738962	118739162	+	846.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 2 of 14)	intron (NM_001024931, intron 2 of 14)	21979.0	NM_001285438	52897.0	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	2.99163688047791	2.7761360867473	2.85277306743673	2.81363277692644	3.18626819819985	3.50711295776729	3.42087392597137	3.11663121231365	1.83877530527026	0.0016116207494828	0.0197713811319263
Merged-chr17-57228216-4	chr17	57228091	57228291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009778)	promoter-TSS (NM_009778)	-55.0	NM_009778	12266.0	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	6.46843797245935	6.83334025265441	6.41652231030547	6.00814109162249	7.10163156718067	6.74591348791048	6.59792706171663	6.29871540688464	0.390199832983979	0.163103626027154	0.452706698401916
Merged-chr7-101451171-4	chr7	101451032	101451232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001143849)	promoter-TSS (NM_001143849)	116.0	NR_152193	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	5.36454438999668	5.38614865185806	5.64707179370939	5.0375022950717	4.85472555152641	4.88858132852039	4.81610100286135	5.2186009475055	-0.792531799411732	0.0185746321830785	0.121877188805249
Merged-chr10-17385433-2	chr10	17385333	17385533	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-289651.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	3.09691436159044	3.48217741327517	3.09730588585549	2.80401754472732	3.30965356175926	3.59556129390078	2.88570540437307	2.81824355233397	0.168074191212622	0.804513865572051	0.924799218965343
Merged-chr1-149939478-3	chr1	149939383	149939583	+	919.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	-17044.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	4.09789960145912	3.4814662934475	3.96871664012627	3.91829196114527	3.87185911824218	3.37631394647046	3.90517440851835	4.01096487324958	-0.198474693768684	0.701026773089482	0.879483655557957
Merged-chr2-73038586-4	chr2	73038498	73038698	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58152.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	5.33556347453814	5.03218845245272	5.53377217880957	5.30368319510267	5.26237928327096	5.0048943263466	5.88260990981503	5.78797494419292	0.389768358321215	0.249182284983943	0.560328612484111
Merged-chr18-56708347-4	chr18	56708232	56708432	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010721, exon 1 of 11)	exon (NM_010721, exon 1 of 11)	519.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	4.45941385531065	4.49793476421643	4.87802626184292	4.40277652516281	4.40816328002715	4.76192185556974	4.82150236816645	4.70172834568416	0.246434958654026	0.507545004449421	0.772859530029637
Merged-chr10-57777227-4	chr10	57777110	57777310	+	960.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7713.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	5.53910986977087	5.55229088367872	5.61850011670441	5.7401766187581	5.79668079204891	5.51232902153783	5.03006586344507	5.42353272874088	-0.236409615642475	0.434445090609275	0.723759937847625
Merged-chr8-106893623-4	chr8	106893535	106893735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011574)	promoter-TSS (NM_011574)	-5.0	NM_011574	21771.0	Mm.10665	NM_011574	ENSMUSG00000041438	Utp4	Cirh1a|Cirhin|Naic|Teg-292|Tex292	UTP4 small subunit processome component	protein-coding	6.33158492805938	6.51038818837702	6.13133618853245	6.11589355967564	6.48504854338397	6.77500236742941	6.62480055742698	6.36484347195165	0.431034113990572	0.0634404467394881	0.267323440591405
Merged-chr18-74991254-4	chr18	74991133	74991333	+	928.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9244.0	NM_001002239	319195.0	Mm.276337	NM_001002239	ENSMUSG00000062328	Rpl17	-	ribosomal protein L17	protein-coding	3.28786444770708	3.24013159476299	3.67489206999531	3.32019542971891	3.51248309840689	3.40248302446728	3.5087183502229	3.84977941878223	0.636160403840675	0.223614709700878	0.531725510182361
Merged-chr6-38876338-4	chr6	38876250	38876450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001294144)	promoter-TSS (NM_001294144)	-160.0	NM_001294143	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	6.24097975114274	6.5513015153206	6.2218519112935	6.21239259385245	6.68808527760405	6.5693447942829	6.65862373316005	6.33412421241938	0.387306004639285	0.0867297009708332	0.321209032577518
Merged-chr3-90476007-4	chr3	90475858	90476058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026374)	promoter-TSS (NM_026374)	-243.0	NM_026374	67781.0	Mm.227258	NM_026374	ENSMUSG00000001016	Ilf2	6230405A16Rik|TEG-267|Tex261|Tex267	interleukin enhancer binding factor 2	protein-coding	7.95262607106421	8.11140062485636	7.96092494172483	7.49457427920841	8.04437610863834	8.01428205548664	7.91573432205585	8.30516397234344	0.240998572120466	0.226631755333101	0.53525698479061
Merged-chr17-80237057-4	chr17	80236959	80237159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12608.0	NM_001355458	67242.0	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem nuclear organelle associated protein 6	protein-coding	5.59009813011449	5.66449108488246	5.59106739559456	6.42686994456216	5.85683533424048	5.82663778985638	6.09971168320047	6.27086017602874	0.199145940590393	0.533404830796434	0.788683474267955
Merged-chr2-50943362-4	chr2	50943263	50943463	+	696.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33679.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	4.23201623498328	4.29376784726728	3.89982693200167	4.05796400539012	4.00898261845156	4.0744029092412	4.17147125763303	4.05042110295471	-0.137098094713002	0.74180358230672	0.898388354542756
Merged-chr17-48337048-4	chr17	48336946	48337146	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9355.0	NM_031254	83433.0	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	4.65675149874929	5.12536604602468	4.51257620710146	4.99987722745509	5.30684405462922	5.22516147578352	5.40123495409861	5.29289541433929	0.836403704906665	0.0123718212457193	0.0917401671475209
Merged-chr2-124669472-5	chr2	124669428	124669628	+	900.4500119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15947.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	3.62061117744269	3.33919454001601	3.6211126072208	4.12420952066668	3.78026904291819	3.29847458706071	3.43965677971002	3.67080962710965	-0.479476971210587	0.398600474377395	0.696793179038619
Merged-chr9-21002833-4	chr9	21002716	21002916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023167)	promoter-TSS (NM_023167)	79.0	NM_001357899	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	6.06348141731255	6.29908128535395	6.06455091249009	6.22464120532541	5.94776015171422	6.13130265136237	5.87972846273171	5.83318281791675	-0.350648429436123	0.141709738699263	0.418839287836592
Merged-chr11-118401981-4	chr11	118401882	118402082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011150)	promoter-TSS (NM_011150)	-23.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	7.05528922294626	7.29113096819737	6.87942265069841	6.96088041515502	6.7187999170233	6.83489059222456	6.85800583608999	6.92772398541813	-0.309737856846443	0.126262791601986	0.394853444200069
Merged-chr13-44800228-4	chr13	44800120	44800320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	68949.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	5.90542253344273	6.33957830438272	6.37894266053004	6.13391145764975	6.41568993341659	6.15670432394177	6.22090255918088	6.39137663406118	0.161055431018136	0.498026663025904	0.767428122781451
Merged-chr9-99580859-4	chr9	99580745	99580945	+	734.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031403, intron 5 of 7)	B2_Mm2|SINE|B2	5046.0	NM_031403	83703.0	Mm.31324	NM_031403	ENSMUSG00000032469	Dbr1	AW018415	debranching RNA lariats 1	protein-coding	3.79695882751821	3.55927738430299	3.69578697381099	3.53940596807296	4.02304447379954	3.70240003019904	3.68095215050444	3.74549434850919	0.489925511553951	0.29544409162849	0.607396411491466
Merged-chr2-142758252-4	chr2	142758132	142758332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 13 of 26)	intron (NM_001355123, intron 13 of 26)	143232.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	5.54085947737656	5.01860147271891	6.13997844364684	6.19194291546338	5.3786305224346	5.33142754149511	5.81307497634858	5.86105946602546	-0.326234668160939	0.372992181061501	0.676706100878765
Merged-chr8-77518076-4	chr8	77517999	77518199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030113)	promoter-TSS (NM_030113)	-192.0	NM_030113	78514.0	Mm.165974	NM_030113	ENSMUSG00000037148	Arhgap10	A930033B01Rik|PSGAP-m|PSGAP-s	Rho GTPase activating protein 10	protein-coding	6.51015351830963	6.12380066152275	6.163285317022	6.76848420196176	6.4676511118566	6.29812072049072	6.41263433079302	6.33561114384155	-0.0809358680779873	0.748265920600588	0.900930235736524
Merged-chr8-56548064-3	chr8	56547962	56548162	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009951, intron 1 of 10)	ORR1E|LTR|ERVL-MaLR	2504.0	NM_001009951	382010.0	Mm.425534	NM_001009951	ENSMUSG00000038215	Cep44	4933440G23Rik|mKIAA1712	centrosomal protein 44	protein-coding	3.78551846327157	3.72145311734857	3.38520422739618	3.812699529123	3.37190223961113	3.56681842882766	3.95102943650581	4.0087103241789	0.170007742195669	0.745970752167965	0.899850054545454
Merged-chr11-23272219-4	chr11	23272118	23272318	+	883.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035226, intron 5 of 25)	B2_Mm1t|SINE|B2	16177.0	NM_134014	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	3.87913633076209	3.63925311025262	4.06736497764081	4.11712413403311	3.92212020233676	3.89403355688879	3.70451965630271	4.06481220869789	-0.12374082404809	0.788020165291646	0.917932066973263
Merged-chr11-80301003-4	chr11	80300959	80301159	+	913.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_139228, exon 1 of 9)	5' UTR (NM_139228, exon 1 of 9)	147.0	NM_139228	246104.0	Mm.194148	NM_139228	ENSMUSG00000017692	Rhbdl3	AI847581|Rhbdl4|Rhomr1|Vrho	rhomboid like 3	protein-coding	3.82096470044526	4.09025544530853	4.02308639328953	3.93503046537237	4.12449011316363	3.82627776186991	4.05103239972916	3.97321780737057	0.0958918272346355	0.822543358514675	0.932143478460956
Merged-chr1-156674898-4	chr1	156674824	156675024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023141)	promoter-TSS (NM_023141)	-585.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	6.60645959132778	7.09245507301332	6.8842400181833	6.76803687678848	6.66845041951852	6.95141833292159	6.52433372564873	6.74146655723095	-0.174213043781278	0.426734369728651	0.718132121626281
Merged-chr5-99363285-4	chr5	99363179	99363379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-110352.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.11630161879809	7.48512299718896	7.38158605931786	7.43922561511426	6.84086695614385	7.1187176309717	7.10494015606958	6.74683385518405	-0.561714713128598	0.00528517642906312	0.0495905052787087
Merged-chr6-83273946-4	chr6	83273839	83274039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166067, intron 13 of 24)	intron (NM_001166067, intron 13 of 24)	36564.0	NM_001166067	232156.0	Mm.333189	NM_001166067	ENSMUSG00000068323	Slc4a5	C330006M16|C330016K18Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 5	protein-coding	6.01823923812604	6.46263290471598	6.4747608887971	6.64830995919451	6.64560441408013	6.24460941305396	6.37366195704562	6.50292423455821	0.0332596748114149	0.892166098852887	0.959609735423941
Merged-chr16-92669725-4	chr16	92669628	92669828	+	947.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 4 of 6)	RMER17C|LTR|ERVK	27601.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.42992226319093	4.50321527049926	4.59845252599247	4.27730000422246	4.6685683593462	4.60577715171838	4.65255111416252	4.77796602718826	0.523406023224614	0.139224115170314	0.414873784489467
Merged-chr16-30058577-2	chr16	30058463	30058663	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6794.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	2.37807615151652	2.45032087867704	2.58713073420957	2.60376605660476	2.54192785980667	2.69168546568366	2.69925130956648	2.64860555319304	0.666840021177852	0.324814329165215	0.636370018321842
Merged-chr3-69669745-4	chr3	69669637	69669837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-52318.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	6.22700067242622	6.27595709325688	5.83025077031337	6.06789137159806	6.26718975298802	6.17681928121727	6.25155291044887	6.29722959704098	0.212642348138393	0.36317957757442	0.668323659570053
Merged-chr10-96267789-3	chr10	96267706	96267906	+	722.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41599.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	3.37357484384881	3.4115212218364	3.60943133278481	3.27327319772034	3.00442934160115	2.98499294398234	2.94078509990734	3.01749835288008	-1.76508452121433	0.00346212795400644	0.0357508785199803
Merged-chr5-117374951-7	chr5	117374824	117375024	+	996.160706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021539, intron 5 of 8)	intron (NM_021539, intron 5 of 8)	14099.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	4.43934172125898	4.40281375190128	4.93653146973581	4.76342200903794	4.22914018156599	4.33049962991293	4.37628521430697	4.56119778049853	-0.644562287626781	0.0971960337077162	0.341632274227805
Merged-chr8-33606566-5	chr8	33606450	33606650	+	853.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017374, intron 1 of 6)	RMER6B|LTR|ERVK	6929.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	3.98367711872631	4.08727475769223	4.08514745042052	4.03323292635392	4.18116524579188	4.20970698795244	4.43919748500507	4.17618393942642	0.526144582568203	0.185771616154354	0.483634024587642
Merged-chr8-72815956-3	chr8	72815852	72816052	+	963.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010687, exon 15 of 15)	exon (NM_010687, exon 15 of 15)	54293.0	NM_007975	14065.0	Mm.12948	NM_007975	ENSMUSG00000050147	F2rl3	PAR4	coagulation factor II (thrombin) receptor-like 3	protein-coding	4.48905500547672	4.22157423369158	4.37567061223021	4.70133065027327	3.861629599168	3.76939046717084	4.27367656513589	3.83829215957708	-1.33043938151271	0.00286599410133131	0.0308574488184331
Merged-chr9-110841052-3	chr9	110840936	110841136	+	758.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153172, exon 6 of 6)	exon (NM_153172, exon 6 of 6)	-3470.0	NM_183103	74306.0	Mm.87419	NM_183103	ENSMUSG00000049719	Prss46	1700112C13Rik|79H19B|Tessp6	protease, serine 46	protein-coding	3.04142079936499	3.26114436584923	3.33980618129117	3.11779792842229	3.28610639674833	3.34051496276999	3.15803156661288	3.28361741474742	0.293581007027444	0.586518247585278	0.818696337632077
Merged-chr11-44504333-4	chr11	44504282	44504482	+	981.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14582.0	NM_028862	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	5.19696205487617	5.19066539016309	4.63448832106299	3.90587709273473	5.29480138680984	5.31230420014977	4.47517604790945	4.87205721581625	0.378089447963557	0.423852114212479	0.715728070732825
Merged-chr1-134099306-4	chr1	134099195	134099395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11947.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	8.26501383103409	8.3742166075865	8.77560699441177	8.43868915960453	8.32262364572611	8.37766500397604	8.67582305749208	8.39979461012513	-0.0333149281495545	0.853124752333476	0.944688343907039
Merged-chr17-37029521-2	chr17	37029416	37029616	+	905.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6118.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	3.39080034480064	3.27020116224558	3.39125598566864	3.20694858213752	3.49427054016485	3.44788661711141	3.48312083580431	3.27359689500399	0.430843451465867	0.399578314748975	0.697713297652764
Merged-chr3-88624324-3	chr3	88624259	88624459	+	968.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	2965.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	3.53229914383443	3.25406707568548	3.71596476372533	3.32823983682151	3.27853866386463	3.17224330363858	3.24702258916243	3.25698549025823	-0.799717389380439	0.145659090239735	0.425330997053419
Merged-chr18-60716907-4	chr18	60716794	60716994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	10672.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	6.62118735525421	6.15695032016144	6.63714303362449	6.77496665607057	6.29816333897007	5.88516038288617	6.44757052844968	6.68980952488432	-0.30830301395486	0.249321073942774	0.560328612484111
Merged-chr9-120128196-2	chr9	120128096	120128296	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011029, intron 1 of 6)	intron (NM_011029, intron 1 of 6)	430.0	NM_011029	16785.0	Mm.4071	NM_011029	ENSMUSG00000032518	Rpsa	67kDa|67lr|AL022858|Lamr|Lamr1|Lamrl1|MLR|P40|P40-3|P40-8	ribosomal protein SA	protein-coding	3.40886050464606	4.06486425704325	4.07047034410937	3.97647035371828	3.98018726243056	4.28888442760442	4.227745893522	4.39990050002719	0.825709029203276	0.0854892610948637	0.318388453090796
Merged-chr14-103012724-4	chr14	103012634	103012834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	21069.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	6.70821875991204	7.37292255066411	6.45554006103131	6.42845773793199	7.19075761573557	7.36446694918152	6.99672529805042	6.33344355037704	0.312661253029635	0.306492087035593	0.618975748704965
Merged-chr2-117264005-2	chr2	117263905	117264105	+	928.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_026620, intron 6 of 7)	intron (NM_026620, intron 6 of 7)	14266.0	NM_026620	68215.0	Mm.219389	NM_026620	ENSMUSG00000027349	Fam98b	2610510H03Rik	family with sequence similarity 98, member B	protein-coding	3.59009533799274	3.68532605139792	3.7977833151914	3.28321245908542	3.47333802666048	3.86987786976675	3.82740593978729	3.64348903869571	0.362200252017194	0.474718868399701	0.751855589262771
Merged-chr13-73847595-4	chr13	73847470	73847670	+	832.362488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028186)	promoter-TSS (NM_028186)	61.0	NM_028186	72293.0	Mm.45506	NM_028186	ENSMUSG00000021567	Nkd2	2210403L10Rik|AW212591|mNkd2	naked cuticle 2	protein-coding	3.45212043603544	3.72059603573923	3.92296504875487	3.80164322077215	3.602507445684	3.80099533046812	3.6682433810069	3.6270936740683	-0.201223041631256	0.673845596117532	0.86588980172769
Merged-chr16-57309963-1	chr16	57309863	57310063	+	816.333313	f0_c57.idr	intron (NM_025599, intron 6 of 9)	intron (NM_025599, intron 6 of 9)	-17112.0	NM_027651	71027.0	Mm.158563	NM_027651	ENSMUSG00000022753	Tmem30c	4933401B01Rik|4933409A18Rik|Cdc50c	transmembrane protein 30C	protein-coding	2.72130539589713	2.72962379248634	2.80520425201322	2.4741646284272	3.79752153451131	3.67526137305388	3.21351111253564	3.72522531547388	4.33775806995649	2.78885323003566e-10	1.99706020181799e-08
Merged-chr12-86892446-6	chr12	86892259	86892459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7545.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	4.03657254926607	3.96180628843799	3.98684404204408	3.55387912438273	4.41932821495545	3.9464752391617	4.36034970815641	4.34038113154268	1.05591983361305	0.0169537898761667	0.114362567247505
Merged-chr8-13888019-4	chr8	13887905	13888105	+	873.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359059, intron 1 of 2)	intron (NM_001359059, intron 1 of 2)	2266.0	NM_001359059	66423.0	Mm.29063	NM_025556	ENSMUSG00000031458	Coprs	1700029I03Rik|2410022L05Rik|AA409325|AI256813|C85432|Copr5	coordinator of PRMT5, differentiation stimulator	protein-coding	4.12086043873698	4.50087565488528	4.17115041211429	3.89463526177613	4.4076400770581	4.39338224004046	4.59656897239794	4.21644493031855	0.557629630918022	0.17815673134368	0.473861887833482
Merged-chr6-134366854-4	chr6	134366749	134366949	+	905.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153848, intron 3 of 8)	intron (NR_153848, intron 3 of 8)	-29480.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	5.79901718752317	5.42372827819744	5.48392589719354	5.75262973321515	4.99336067900617	4.82914939576385	4.80252249869369	4.7335436546585	-1.44930721660408	4.48212935615724e-06	0.000134556510097814
Merged-chr1-161359534-3	chr1	161359424	161359624	+	791.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35914.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	3.62327033774201	3.28877650645421	3.71964575204866	4.04967866821692	3.06463743169074	3.46277640286684	3.20806469939301	3.34567834474868	-1.51771247160564	0.0093465092972797	0.0752318427310948
Merged-chr2-25706726-2	chr2	25706626	25706826	+	745.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023326)	promoter-TSS (NM_023326)	-153.0	NM_023326	107771.0	Mm.330057	NM_023326	ENSMUSG00000049086	Bmyc	2900002K07Rik|AW060705|Mycb	brain expressed myelocytomatosis oncogene	protein-coding	3.01536981288944	2.95991824332476	3.18302012090226	2.7899710316328	2.82470042430225	3.0655840060943	2.59509892586172	3.18107403618688	-0.239866613449476	0.716817362621275	0.886743653070435
Merged-chr2-180578922-4	chr2	180578839	180579039	+	805.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2283.0	NM_028479	73247.0	Mm.426558	NM_028479	ENSMUSG00000027569	Mrgbp	1600027N09Rik|AW060503|C80444	MRG/MORF4L binding protein	protein-coding	3.83798105820712	3.80033186575509	4.188979967106	4.06013886370096	4.12732174326829	4.22329881150531	4.47608670934178	4.04771929471052	0.618425487575054	0.148779103821213	0.430696887057749
Merged-chr9-119418234-3	chr9	119418141	119418341	+	967.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007397, intron 1 of 9)	intron (NM_007397, intron 1 of 9)	16063.0	NM_001313757	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	4.34060767251658	4.00858279966642	4.05289677104562	3.9114372208661	5.27088453868756	5.44957517499936	5.29958830131123	5.13921451057644	2.60839162541562	1.04020134908609e-13	1.36103845269483e-11
Merged-chr2-170164329-4	chr2	170164203	170164403	+	943.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21628.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	3.90390655464125	3.89157008238218	3.85032479261916	3.79196559321361	4.35239727988349	4.35790005166538	3.88856156055482	4.18637856668745	0.948932251947213	0.0247668609312795	0.147533717819696
Merged-chr12-4211267-4	chr12	4211171	4211371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 19 of 21)	intron (NM_001159537, intron 19 of 21)	22694.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	8.1956109933566	8.25533238873005	7.82928792144708	8.01712822256904	8.01425046530386	7.95129863797714	7.97826604499716	7.8317453198576	-0.17617901219986	0.30807486879194	0.620464633742897
Merged-chr2-124617552-4	chr2	124617428	124617628	+	818.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	7232.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	3.71868703408383	3.52737004057561	3.76552329189805	3.52998828695563	3.58230260343798	3.24418196020181	3.32628552894558	3.61913748831351	-0.573304221122517	0.269199877617372	0.580753412406101
Merged-chr6-125165184-2	chr6	125165095	125165295	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_001289726, intron 2 of 6)	CpG	578.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	5.67782776682252	6.0111606877919	6.03495682585434	5.30668125488353	6.16675171530099	5.98563098757227	5.98322554230604	6.22197283988405	0.515159316447175	0.0707423252651265	0.285160718657064
Merged-chr5-98033226-4	chr5	98033123	98033323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2261.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	6.56302210311563	6.30600580142672	6.36090200767995	6.5398514943845	5.80438824550054	5.88883202252769	6.06589777376644	5.61638413501867	-0.926534475761818	0.000131420261655543	0.0025537435993393
Merged-chr7-96914266-4	chr7	96914182	96914382	+	858.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37245.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	3.71373850279121	3.79003915609505	3.90901338100398	3.80529684189068	3.68799050533819	3.53521904584447	3.69943292826516	3.81309860569875	-0.353542233292513	0.442282003434059	0.729012256605129
Merged-chr7-31115753-4	chr7	31115673	31115873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008281)	promoter-TSS (NM_008281)	-447.0	NM_001110252	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	7.58569809972837	8.02918249022365	7.92449205868138	7.52069203997491	7.6642971374315	7.82610767686406	8.10005373821641	7.20672321538706	-0.0540869567095782	0.816765553299457	0.929518098916358
Merged-chr9-59541742-6	chr9	59541758	59541958	+	749.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	2318.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	3.69813330839958	3.30485581333407	3.79752802697216	3.66737356688765	3.47525220057743	3.91839273250226	3.52123634249871	3.79519473068724	0.17297418781737	0.733593520146833	0.894541206455181
Merged-chr4-56086449-4	chr4	56086353	56086553	+	786.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-553978.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	3.99525720141399	3.61645020987884	3.62524562357732	4.35811332551794	4.05568831694973	4.06927101168919	3.67132713913752	4.1247576434146	0.098994072797194	0.84902376194876	0.942993202130743
Merged-chr10-8744087-2	chr10	8743987	8744187	+	885.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 12 of 19)	MTEb|LTR|ERVL-MaLR	141983.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.73930283248195	2.47674871787066	2.62607169720045	2.25420869688724	2.56462116509693	2.39123099477947	2.35681897592456	2.36242213027246	-0.583931060060462	0.437570967807209	0.725755822849462
Merged-chr14-99046280-4	chr14	99046192	99046392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175245)	promoter-TSS (NM_175245)	-85.0	NR_153765	77744.0	Mm.23503	NM_175265	ENSMUSG00000022070	Bora	6720463M24Rik|AI317232	bora, aurora kinase A activator	protein-coding	8.70401052983954	8.94399155378298	8.87900111387352	8.94665177366189	8.74971257581903	8.45261619272548	8.95060779581019	8.54804503427328	-0.227485159599076	0.180248089486105	0.476611410681675
Merged-chr12-116432121-1	chr12	116432021	116432221	+	581.666687	f1_c57bl6.idr	intron (NM_133762, intron 16 of 28)	RLTR19-int|LTR|ERVK	26719.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	2.10815548599298	2.06704353687666	2.10830782449086	1.9022209702428	2.63163781065459	2.66894282345123	2.60623908441719	2.88942940209989	5.44659911081463	1.41209658751271e-08	7.29402198857524e-07
Merged-chr1-191396248-4	chr1	191396146	191396346	+	975.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144880, exon 1 of 13)	exon (NM_144880, exon 1 of 13)	795.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	4.57376537025885	4.42147223614595	4.65802450236579	4.62437592573624	5.15081372750055	4.83243304468693	4.82240539609213	4.84252797545	0.737883544662553	0.030187097205477	0.167993803262022
Merged-chr15-41788837-4	chr15	41788794	41788994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130885)	promoter-TSS (NM_130885)	-101.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	6.64906852036591	6.51490844915555	7.1336619839602	6.39827226258087	6.50161812408889	6.90195920586216	6.85483360389296	6.74968558215136	0.0878867866693112	0.722770179043077	0.88928524667289
Merged-chr5-149636738-4	chr5	149636644	149636844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013559)	promoter-TSS (NM_013559)	-408.0	NM_001347534	15505.0	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	7.31690457199385	7.28469057983073	6.94042288464404	7.22471326781768	7.56208725839429	7.2784869722059	8.04286234568624	7.56908071357446	0.590288584718405	0.00690792580970814	0.060308996836651
Merged-chr7-121280373-4	chr7	121280279	121280479	+	962.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-111917.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	4.42959344824021	4.56675192029414	4.67439068706134	4.73606093012289	4.59377037943189	4.88062699815118	4.11356894534287	4.5140348383767	-0.134915608018755	0.729678458440117	0.892754576435861
Merged-chr11-69031865-3	chr11	69031750	69031950	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281465, intron 15 of 22)	intron (NM_001281465, intron 15 of 22)	-13787.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	3.9890571245179	3.51688806541306	3.98969665522069	3.66849688607571	3.46023360573509	3.76792034158452	3.68842928382352	3.75364139008865	-0.396611824924812	0.420288173253115	0.713212346739385
Merged-chr14-32482305-4	chr14	32482192	32482392	+	840.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16383.0	NM_009891	12647.0	Mm.442817	NM_009891	ENSMUSG00000021919	Chat	B230380D24Rik|CHOACTase	choline acetyltransferase	protein-coding	4.22495496102143	4.34057391172195	4.32162290244048	4.55252427218458	4.74455054215129	4.49583818574367	4.39132147246741	4.57011024480375	0.41434956759751	0.274723269362549	0.586448164286134
Merged-chr8-71495130-4	chr8	71495019	71495219	+	973.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7016.0	NM_032544	70359.0	Mm.142112	NM_032544	ENSMUSG00000007610	Gtpbp3	2410009F13Rik|AI607903	GTP binding protein 3	protein-coding	4.35779582571856	4.91311974397804	4.40960341004119	4.27945427925372	5.09843189344392	5.07952171214094	4.91591166819593	5.23338856648276	1.18612462123005	0.00100638868911329	0.0135183507270041
Merged-chr12-70753111-3	chr12	70752990	70753190	+	881.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72424.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	3.06819921888171	2.91004477996863	3.28376005230175	3.51940302271858	2.80071729369137	2.8436189945092	2.73057300665188	3.00712735709576	-1.64907870083566	0.0133993123074607	0.0970909399635035
Merged-chr10-13324228-4	chr10	13324147	13324347	+	905.8833619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033257)	promoter-TSS (NM_001033257)	42.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	4.55983993043685	4.46720118501326	4.52061907766599	4.3554113362135	4.34944891122713	4.42843480965213	4.75348117935319	4.55760295691188	0.131677859337449	0.720832290429865	0.88846247810902
Merged-chr10-93799740-4	chr10	93799618	93799818	+	939.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31837.0	NM_001206851	327799.0	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	3.91000678943901	4.19518822609956	4.32881762358534	4.22397403465105	5.67996176480391	4.9443799981226	4.81565696665171	5.14773391258221	2.1396996308739	1.41727713856545e-07	5.88566916254084e-06
Merged-chr3-41042425-3	chr3	41042324	41042524	+	924.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	40622.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	2.97749725922933	3.07406203749014	3.04967381257734	2.962332194627	3.1410175285008	3.73563945890092	3.76520630121977	3.30293531089459	1.79622808508679	0.00183513925894361	0.0218726351829115
Merged-chr6-36989587-3	chr6	36989481	36989681	+	830.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 20 of 32)	intron (NM_001347104, intron 20 of 32)	-179402.0	NM_008973	19242.0	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	3.07441334180956	3.38347015979677	3.79969125890967	3.80356791057523	3.2903374808708	3.4572239073458	3.55153348684393	3.34147829999687	-0.479013582608098	0.407736228457764	0.703911157055426
Merged-chr7-17003397-3	chr7	17003301	17003501	+	892.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	8813.0	NM_001101535	434130.0	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	-	coiled-coil domain containing 8	protein-coding	4.52908160917852	4.07960326687564	4.34052615921922	4.30409454303409	3.89994419301753	4.24324771371121	4.14732153689159	4.0657011549928	-0.590366657656813	0.155046611954463	0.440596566285001
Merged-chr17-23803562-4	chr17	23803471	23803671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175229, intron 1 of 13)	CpG	384.0	NM_175229	75956.0	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	6.16518992444089	6.83271222675769	6.39196235417386	6.23642511956475	6.99214477827247	6.95399219841005	6.82353875272152	6.82734017444582	0.676763347323219	0.00391870906660357	0.0394359181154285
Merged-chr8-85513415-4	chr8	85513289	85513489	+	920.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 6 of 11)	MER5A|DNA|hAT-Charlie	20772.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	4.12505004792394	4.00074894601439	5.10098210119873	4.70973841515401	3.48554163895577	3.7752464637873	4.33565719764607	4.22018247436689	-1.35421547054663	0.0139580822642105	0.0997812933096552
Merged-chr2-126491636-4	chr2	126491549	126491749	+	918.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080944)	promoter-TSS (NM_001080944)	-96.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	4.67910773271478	5.12601623643307	4.86277823977868	5.13960411465248	4.42968920909153	4.34192050437673	4.49185206894839	4.59572841729916	-1.09887016885346	0.00237715772934193	0.0266882823370394
Merged-chr7-4915401-4	chr7	4915289	4915489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_170759, exon 1 of 3)	5' UTR (NM_170759, exon 1 of 3)	172.0	NM_170759	232816.0	Mm.27442	NM_170759	ENSMUSG00000074406	Zfp628	Zec|Znf628	zinc finger protein 628	protein-coding	6.40833698211894	6.37058643511915	7.13806657688022	6.44937004727831	6.45957300042638	6.80362662650211	6.3016460428286	6.808156353758	-0.0272664753021334	0.919330028980671	0.970285021467879
Merged-chr8-36130384-3	chr8	36130260	36130460	+	940.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172911, intron 4 of 5)	intron (NM_172911, intron 4 of 5)	-25650.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	3.05248421689896	2.88758142052385	3.05292781415814	3.11091517462806	2.5567923935032	2.78750107619341	2.60233548410571	2.81629667970299	-1.69179135962544	0.0125370596061758	0.0926277107855502
Merged-chr8-37062458-4	chr8	37062357	37062557	+	845.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38219.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	4.51750782479428	4.28627258903185	4.55996073268889	4.05921283406767	5.0278310668778	4.46780815145387	4.98006545902551	4.63648417826447	1.00019552029551	0.0100185417075236	0.0790236901817181
Merged-chr16-91464993-4	chr16	91464880	91465080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_077219)	promoter-TSS (NR_077219)	-124.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	7.96023802241491	8.13860562648364	7.92599286280245	8.07580187732164	8.02327468482363	8.07419338808388	8.14710211671184	7.95622674960061	0.0244722865645518	0.877910456855365	0.954314763971155
Merged-chr11-4271003-3	chr11	4270888	4271088	+	959.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008501, exon 4 of 4)	3' UTR (NM_008501, exon 4 of 4)	4192.0	NM_001039537	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	3.93601943943106	3.65091479491282	3.79849025214226	3.85703491806261	3.89606314569729	3.64446364271173	3.57397960160769	3.4016200826834	-0.490033164958085	0.320270559697914	0.632115478349849
Merged-chr19-12010111-2	chr19	12009998	12010198	+	823.833374	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	26642.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	4.0870794324426	4.34668388760883	4.18528397743506	3.93351362276159	4.15847018433654	4.35893685531799	4.2126700629345	4.58224120219544	0.487022392760111	0.235349475688139	0.545381570842755
Merged-chr6-134173523-4	chr6	134173395	134173595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	137795.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	5.83326020319434	5.97846801706704	5.85636339579297	6.01577994173593	5.13775192426592	5.28599175669692	5.66405683795552	5.34862361807761	-0.958456321384779	0.000546510475975423	0.00828457287357615
Merged-chr6-116264201-4	chr6	116264095	116264295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309446)	promoter-TSS (NM_001309446)	-24.0	NM_001309446	67492.0	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	6.60415628005318	6.67730388913442	6.45520352101299	6.52942528138107	6.60989165979956	6.59645064487336	6.92388721147989	6.56878365967918	0.163858631595933	0.439572551135085	0.727408272116972
Merged-chr5-88564042-2	chr5	88563942	88564142	+	720.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289775)	promoter-TSS (NM_001289775)	-998.0	NM_001289774	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	2.66061055509549	2.80041322554109	3.13262467564888	2.92881885754879	3.08376703695355	3.06054635776066	3.12005780232225	3.43169309170672	1.1657497631718	0.0617023578170309	0.262784187582029
Merged-chr9-38719170-4	chr9	38719065	38719265	+	928.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145957, intron 1 of 18)	intron (NM_001145957, intron 1 of 18)	897.0	NM_172767	67776.0	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	3.78536866032678	3.79645154674768	4.22189676785832	4.06532885173318	3.90643005255913	4.21723854644876	3.82703130446471	4.29852045307261	0.236022438840851	0.602126039110646	0.827431600688833
Merged-chr8-11465440-4	chr8	11465328	11465528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	B2_Mm2|SINE|B2	-12501.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	6.27861298133482	6.60702374277197	6.33450969335508	6.12870208194144	6.06668093629195	6.21066863050049	6.04669432465135	6.44910672487578	-0.216122958103461	0.380529453196995	0.682947704213538
Merged-chr2-32395139-2	chr2	32395039	32395239	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133783)	promoter-TSS (NM_133783)	-751.0	NM_133783	96979.0	Mm.28048	NM_133783	ENSMUSG00000026820	Ptges2	0610038H10Rik|C79137|Gbf1|Mpges2|Pges2	prostaglandin E synthase 2	protein-coding	2.90152865928701	2.69449363658951	2.78601977380035	2.64971089128126	2.77366570058343	2.69252514153242	2.77603445883914	2.65701707491464	-0.129084390620181	0.839201538626592	0.938895262970456
Merged-chr2-27593497-4	chr2	27593407	27593607	+	936.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78360.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	4.89489774260628	4.41065337605534	4.86308314489251	4.71430774168588	4.61796758610097	4.65557087355431	4.31970588495675	4.72010085432269	-0.305715721378673	0.406044974672418	0.70257615412422
Merged-chr5-135187098-4	chr5	135186964	135187164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011714)	promoter-TSS (NM_011714)	-259.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	8.45077992706177	8.74965728240438	8.61621474408935	8.28579644797608	8.62331125754065	8.80320665478992	8.58124579863142	8.49718961174708	0.122598136511695	0.476024153927652	0.752669508239473
Merged-chr2-35505641-3	chr2	35505509	35505709	+	762.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44160.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	2.99074598835876	2.88836806645939	2.93196333621655	3.22240305873567	2.73353334761625	2.76783874557556	2.86052594691678	2.98956512155576	-0.830338538233115	0.187934948719799	0.486397310500761
Merged-chr5-101766957-4	chr5	101766853	101767053	+	966.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173370, intron 1 of 12)	intron (NM_173370, intron 1 of 12)	1823.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	5.00133068976487	4.7788264666959	5.3619248629107	5.34058277883169	4.89570267796428	4.78047110385254	4.94312710095288	5.1913083231094	-0.369175383747849	0.279174370513492	0.591369431345506
Merged-chr8-11575745-3	chr8	11575598	11575798	+	775.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17288.0	NM_001302459	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	3.20024233076993	3.13281701693651	2.88618609131622	2.98376695660938	3.1478220680552	3.31286467765174	3.13173020233254	3.1418815388059	0.518545442896797	0.355521226442378	0.662156772560432
Merged-chr10-79755108-4	chr10	79755033	79755233	+	828.891663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023304)	promoter-TSS (NM_023304)	14.0	NM_023304	67112.0	Mm.154211	NM_023304	ENSMUSG00000020327	Fgf22	2210414E06Rik|FGF-22	fibroblast growth factor 22	protein-coding	4.04028530529252	4.05371460614019	4.04086225197525	4.30493348952774	4.11607584679882	4.30852608175019	4.2085152118691	4.18067404137535	0.176009603242612	0.666182154311401	0.861911413823008
Merged-chr7-38061254-4	chr7	38061147	38061347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-41695.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	5.99223233596588	6.0833262180955	6.05756445268105	6.15832271000723	6.10823081866259	5.76177817124178	5.96275157664152	6.17260285989477	-0.0992152593486648	0.680786051460928	0.868956507598538
Merged-chr11-80058811-2	chr11	80058711	80058911	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018776, intron 4 of 7)	intron (NM_018776, intron 4 of 7)	22180.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	3.31814753804937	3.82475047928075	3.25888129395176	3.27520304066325	3.27879427418359	3.09927127975768	3.41639563565377	3.31684081196805	-0.556778145616105	0.327408528408972	0.638962563709689
Merged-chr14-122913099-4	chr14	122912972	122913172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155287)	promoter-TSS (NR_155287)	42.0	NR_155286	105245866.0	Mm.390754	NM_001039531	ENSMUSG00000075463	Gm15735	4930594M22Rik|F930011C10Rik	predicted gene 15735	ncRNA	5.91470133498407	5.0590212987839	6.12009989479258	5.89923639832237	5.23484802090138	5.54465138342308	5.33984024602825	5.12410901374905	-0.836525095643514	0.0134170787552093	0.0971727969797561
Merged-chr5-99217497-3	chr5	99217415	99217615	+	894.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145839)	TTS (NM_145839)	35412.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.24284634204626	3.71531628136517	3.04631816669642	3.26805403844496	3.23227693340358	3.35592834633388	3.40072728079136	3.3581266574034	-0.026624507860618	0.962350994904288	0.986522380158311
Merged-chr16-85173754-4	chr16	85173663	85173863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198824)	promoter-TSS (NM_001198824)	-56.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	6.67793252406504	6.94516296459062	6.45462263866986	7.07108566846232	7.01991778247509	6.84087019013926	7.15565972125976	7.0996772686783	0.289865586523059	0.196598097043312	0.497711479209202
Merged-chr13-34229078-4	chr13	34228990	34229190	+	891.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	66126.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	5.16176057546854	5.08482820931238	5.22231366311121	5.33913414676658	4.55507502033842	5.10363601439441	4.94070150020679	4.84951713398573	-0.684586428415998	0.0374752106157155	0.193321352110162
Merged-chr18-73754448-4	chr18	73754370	73754570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053255)	promoter-TSS (NM_053255)	9.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	6.51160448886031	6.73053204624418	7.00223903856054	6.81757612714	6.59373413478344	6.63696200820789	6.78159605711695	6.43823126919279	-0.23249945215206	0.28533864740694	0.597040378146234
Merged-chr9-13716519-4	chr9	13716427	13716627	+	912.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32654.0	NR_024025	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	4.37270626766296	4.3047610898469	4.18784669720758	4.51102763661555	4.38204359972482	4.4112281694914	4.51417236256536	4.45413885778901	0.175295511945971	0.641718477506872	0.848854850593973
Merged-chr4-42947041-4	chr4	42946943	42947143	+	942.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2824.0	NM_001355438	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	4.91011677372215	4.91080504177802	4.52556844541106	4.321167221471	5.25951413061742	4.78856586149976	4.63205849777264	4.52272035943238	0.338593745749814	0.399886602188211	0.697931153338137
Merged-chr5-92509125-4	chr5	92508989	92509189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3432.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	6.78728043799098	7.04894896482889	6.47646189598972	6.86002599535079	6.88183063257151	6.63621019559037	6.42562252554134	6.38015564743285	-0.296750783103714	0.211648395341156	0.516351762401644
Merged-chr17-63921797-4	chr17	63921691	63921891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001286415, exon 4 of 18)	exon (NM_001286415, exon 4 of 18)	-16181.0	NM_008000	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	5.9397319107921	5.92980008754611	6.60231316296486	6.48515204721524	5.62026149250167	5.65893891079221	6.01945916962172	5.88986517303804	-0.751127741271719	0.00846317716150498	0.0698597341039967
Merged-chr17-40763845-4	chr17	40763744	40763944	+	858.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009420)	TTS (NM_009420)	30302.0	NM_001204071	22024.0	Mm.1296	NM_009420	ENSMUSG00000023930	Crisp2	CRISP-2|GAPDL5|Tpx-1|Tpx1	cysteine-rich secretory protein 2	protein-coding	4.19605151937986	3.93990353461614	3.83168657530612	3.92783363017014	4.52804868475515	4.2282751399851	4.52918637515406	4.23875109132985	1.04938753692169	0.00967466378585855	0.0771059112768588
Merged-chr10-117304561-3	chr10	117304455	117304655	+	777.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11687.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	4.06307905823142	4.00080710560123	3.97555622883628	4.06282594439336	3.38112471454667	3.5989163504564	3.65358558352054	3.97307939139235	-1.08667700236621	0.0246322315145818	0.146923575959909
Merged-chr4-155519487-4	chr4	155519386	155519586	+	708.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160016, intron 2 of 11)	intron (NM_001160016, intron 2 of 11)	28125.0	NM_001160016	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	3.92308195483716	3.4804874522289	3.6611685105729	3.75691782806591	3.74002117087729	3.78082401936533	4.16060259703167	4.1386391271888	0.711049370000949	0.13280812767898	0.405819083028338
Merged-chr17-26895778-2	chr17	26895678	26895878	+	950.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21313.0	NM_053173	16580.0	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	2.98387972622151	2.77666174405102	2.78741757255099	2.95851592576191	3.24647026352942	3.0296556762548	3.03234554431615	3.09895662936507	0.928065424186166	0.116811088518828	0.378172312820962
Merged-chr10-13835874-3	chr10	13835776	13835976	+	962.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	33081.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	4.13183850966772	4.793906334678	4.08793727794766	4.29210119790497	3.45688587287536	3.78754483208381	3.37975953798375	3.53170169617549	-2.44714592523151	4.43859521514795e-06	0.000133418398994517
Merged-chr11-11690258-4	chr11	11690037	11690237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301866)	promoter-TSS (NM_001301866)	-40.0	NM_001301865	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	4.54595147987431	4.56005553146405	5.20399589671517	5.23336429402741	4.95632248364564	4.81767590902352	5.05933029944659	5.1420677750799	0.110009017183753	0.768103261198498	0.909266558474345
Merged-chr14-21148547-4	chr14	21148462	21148662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 3 of 10)	intron (NM_134079, intron 3 of 10)	72410.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	5.7659006726874	5.35366049439865	6.10653215369735	6.40601531332788	5.23230947064381	4.8253320209359	5.06142037872039	5.48141826467363	-1.37194988557908	0.00011505656787756	0.00228122881475121
Merged-chr19-26711420-2	chr19	26711320	26711520	+	917.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 25 of 32)	intron (NM_011416, intron 25 of 32)	-36745.0	NM_001347439	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	2.75147988997127	2.63954473394932	2.57662216152669	2.2714581747298	2.57561565191821	2.54991787701781	2.29357127647415	2.21917135486761	-0.812996256237889	0.303956474735882	0.616689505322389
Merged-chr15-80133130-4	chr15	80133044	80133244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025609)	promoter-TSS (NM_025609)	-10.0	NM_025609	66513.0	Mm.288245	NM_025609	ENSMUSG00000022414	Tab1	2310012M03Rik|Map3k7ip1|b2b449Clo	TGF-beta activated kinase 1/MAP3K7 binding protein 1	protein-coding	6.81422690560461	7.29429388325359	6.35928052225593	6.66319366255178	6.64740465410121	6.84749738940845	6.54156566089994	6.6659703850111	-0.214073244028549	0.400631353233975	0.698394798671281
Merged-chr2-159950386-4	chr2	159950282	159950482	+	654.554138	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040498, intron 1 of 6)	intron (NR_040498, intron 1 of 6)	3041.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	4.29402627420344	4.03528196360975	3.83588997867832	3.75833839751885	3.95321957706799	4.01209457029797	4.06773307224265	4.08331388096793	0.116118055880579	0.79228482826271	0.919548033376458
Merged-chr14-21854103-3	chr14	21854008	21854208	+	847.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_176925, exon 3 of 3)	3' UTR (NM_176925, exon 3 of 3)	-5198.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	3.29051104469769	3.18446362891943	3.29091356696311	3.1934604967296	3.20939874257741	3.63063357442081	3.76767820653065	3.56280532723699	1.11316487966486	0.0363530177554995	0.189608063949046
Merged-chr3-144204695-2	chr3	144204595	144204795	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010723, intron 1 of 4)	CpG	560.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	4.55708873280983	4.73495304405654	4.68068159966504	4.97064136302039	4.62819909128949	4.92770038174784	4.5791112034138	4.59714521401187	-0.161622075771137	0.650617723324836	0.853363288282939
Merged-chr17-34028111-4	chr17	34028013	34028213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013543)	promoter-TSS (NM_013543)	-58.0	NM_013543	14979.0	Mm.275452	NM_013543	ENSMUSG00000073422	H2-Ke6	D17H6S112E|H-2Ke6|Hsd17b8|Ke-6|Ke6|Ring2	H2-K region expressed gene 6	protein-coding	6.62604203264235	7.02229187259201	6.62721003207883	6.74587482587199	7.03113901652196	6.59864652360088	6.8106726545678	6.4527869800566	-0.0211751105513714	0.92726899745711	0.973427812288727
Merged-chr6-116016539-3	chr6	116016445	116016645	+	799.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21540.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	3.69977025713277	3.69615670735007	4.14529126758242	3.79955199389793	3.42341827615038	3.70704644222074	3.57552413596771	3.75035861296936	-0.707646887912361	0.148806197814395	0.430739176666564
Merged-chr11-106216886-4	chr11	106216771	106216971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026009)	promoter-TSS (NM_026009)	-55.0	NM_001361643	72047.0	Mm.41367	NM_028074	ENSMUSG00000020705	Ddx42	1810047H21Rik|AW319508|AW556242|B430002H05Rik|RHELP|RNAHP|SF3b125	DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	protein-coding	7.25165811077942	7.50133620256582	7.07778132458276	6.95413169943174	7.56030833247253	7.51414310270106	7.30063962882972	7.38198235682591	0.323512764728232	0.112317808588411	0.370466603221248
Merged-chr8-79161608-4	chr8	79161494	79161694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	ORR1D2|LTR|ERVL-MaLR	86989.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	6.13194889780304	6.02816252066165	6.3467311660583	6.77541981299059	6.46361723780729	5.89260522412538	6.4000616769076	6.35991398435237	-0.102391805492321	0.714526556018898	0.885865917211766
Merged-chr11-69043924-3	chr11	69043821	69044021	+	765.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1716.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	3.34783905334585	3.17621155625299	3.17790298690824	3.18822189530446	3.10612610886875	3.40645077581569	3.28118942877877	3.23556093622868	0.130163837143783	0.808751628159555	0.92614077482454
Merged-chr14-30716268-4	chr14	30716192	30716392	+	992.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166532, intron 1 of 20)	CpG	677.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	4.88034217894263	5.22939905078629	4.72962127604014	4.81538515279355	4.89075498452101	4.78097385482588	4.66728078914291	4.98062092916923	-0.178264675917188	0.601942960222456	0.827350609957033
Merged-chr4-136120212-4	chr4	136120112	136120312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23610.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	6.33863000737569	6.48252693324655	6.39301135521462	6.83887862858727	5.88800104952548	6.01491901492957	6.17416238350141	6.52019919705684	-0.56599827040132	0.0304529579068709	0.168916155891034
Merged-chr13-74759359-4	chr13	74759271	74759471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301153, intron 3 of 31)	intron (NM_001301153, intron 3 of 31)	11365.0	NM_001301156	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	5.55663313284461	5.63799202888869	5.79756825443666	6.12352458160349	6.06731497430842	5.67347843245905	5.95000389412779	6.33743367382349	0.345291225221437	0.23373443023833	0.543454520665151
Merged-chr17-88063067-4	chr17	88062972	88063172	+	981.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	1860.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	5.59542423015159	5.354621159886	5.11458494273727	5.39337652350466	5.5270308363105	5.1846087682519	5.05514518468406	4.88603974047361	-0.317696009890791	0.329229158709159	0.640484837404877
Merged-chr13-105426173-4	chr13	105426067	105426267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-17526.0	NM_008308	15550.0	Mm.4716	NM_008308	ENSMUSG00000021721	Htr1a	Gpcr18	5-hydroxytryptamine (serotonin) receptor 1A	protein-coding	5.31086357170328	5.45116316152574	5.15047817830723	5.1124859102228	5.4622367456721	5.36033398785955	5.5549627480793	5.30809564363085	0.310610314815281	0.28106972782202	0.593153291080506
Merged-chr1-167220637-4	chr1	167220506	167220706	+	893.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64521.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	4.24894232658288	4.15854444594971	4.54431126439122	4.30308060779293	4.13911797090555	4.91875996571443	3.97352237150315	4.42330281896097	0.20967758632792	0.637300293402292	0.846724112145476
Merged-chr10-62411160-3	chr10	62411051	62411251	+	819.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145419, intron 4 of 17)	intron (NM_145419, intron 4 of 17)	11306.0	NM_145419	216019.0	Mm.213213	NM_145419	ENSMUSG00000020080	Hkdc1	BC016235	hexokinase domain containing 1	protein-coding	4.16267923159963	4.40202191811547	3.85846733119084	4.09810188229758	4.09758833014419	3.92161339846381	4.49407107050669	3.96588585356103	-0.00958400133354279	0.982849734170738	0.993865312500427
Merged-chr1-91024132-4	chr1	91024034	91024234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	25407.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	7.07007398124356	7.11106773879143	6.85310548567335	7.16646842733296	6.9356876303164	6.91320319057041	7.09302837533887	6.7909328561461	-0.174341120617077	0.375679997208292	0.678595291948235
Merged-chr4-101720802-3	chr4	101720628	101720828	+	741.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146146, intron 1 of 18)	intron (NM_146146, intron 1 of 18)	3321.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	3.6958815503227	3.27237074602258	3.60189142201091	3.45461284732293	3.43420474337703	3.50277464735847	3.31732752204352	3.26545716192013	-0.431234006356628	0.410628477399199	0.706010396212411
Merged-chr18-50111435-4	chr18	50111336	50111536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16765.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	6.98001368136826	7.40854011670435	7.23917429112778	7.4676131622949	6.20114587376326	6.3548331642335	6.71488483859219	6.7445792091191	-1.09174404785724	2.55186138049516e-06	8.16721857923854e-05
Merged-chr10-118804820-4	chr10	118804730	118804930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64073.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	8.03968069348127	8.36287933810459	7.97304142017201	8.08350404087962	7.87878059598459	8.2383008054677	8.12804616309202	7.75508406635481	-0.146445983773376	0.43450799247245	0.7238182012175
Merged-chr17-56507333-4	chr17	56507238	56507438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5145.0	NM_011483	20834.0	Mm.76862	NM_011483	ENSMUSG00000044526	Znrf4	1700094M01Rik|Ssrzf1|spzn	zinc and ring finger 4	protein-coding	6.4235311762295	5.96325469221665	6.09324803329921	6.13918714327254	5.54876797472737	5.87573741297423	5.91455311802534	5.79817076645635	-0.60507571252459	0.0188790062376632	0.123068851084406
Merged-chr15-74931809-4	chr15	74931710	74931910	+	953.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23241.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	4.98659301439659	5.07613813076691	4.98741715115171	5.37588580310823	6.21983663974879	5.98714479497126	6.2136479511371	5.808174079972	1.54972231579152	2.03320427803955e-07	8.19023470891777e-06
Merged-chr8-84249717-4	chr8	84249616	84249816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007571)	promoter-TSS (NM_001007571)	45.0	NM_001007571	101966.0	Mm.200723	NM_001007571	ENSMUSG00000019362	D8Ertd738e	AA589584	DNA segment, Chr 8, ERATO Doi 738, expressed	protein-coding	6.39741146995182	6.30948964576904	6.05756790752459	6.2041326344989	6.68339039056847	6.72257618318298	6.36576925084974	6.44559237110146	0.474318543019971	0.0355085792342316	0.187025689012385
Merged-chr8-124756867-3	chr8	124756762	124756962	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5053.0	NM_001081120	69627.0	Mm.271600	NM_001081120	ENSMUSG00000043068	Fam89a	2310031A18Rik	family with sequence similarity 89, member A	protein-coding	4.31916791037942	5.04840873142681	4.35893553019477	3.26052732541474	3.91924199349607	3.66082080148256	3.58846816482195	3.45989022583687	-1.90877615066027	0.00220667827961339	0.0252360464756751
Merged-chr18-9556046-4	chr18	9555951	9556151	+	938.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63418.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	4.74866859397694	4.83815996251233	4.6337677214868	4.50196347286449	4.7710806595726	4.766984777888	4.52991505815181	4.7825823385789	0.092298668754079	0.790633975204618	0.918840742585233
Merged-chr5-21267277-1	chr5	21267177	21267377	+	610.0	f0_balb.idr	intron (NR_153365, intron 18 of 26)	Lx8|LINE|L1	81010.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	2.88742005802556	2.73119172390466	2.99461957937633	2.89191940345913	2.69188675015617	2.52504101135194	2.41869201938048	2.64148597428723	-1.54636335417267	0.0313001918980378	0.172271431745574
Merged-chr3-95674961-4	chr3	95674857	95675057	+	945.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	12960.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	4.02451766643478	3.91019094447993	4.02510908066452	3.85299396801265	4.41989274853892	4.14885300383562	3.90790747217184	4.16094430785757	0.618963018477004	0.143590434338386	0.42198034015215
Merged-chr8-80996789-2	chr8	80996689	80996889	+	894.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_027554, intron 4 of 9)	(A)n|Simple_repeat|Simple_repeat	18117.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	2.59371421606698	2.58886789995977	2.52069904295536	2.71724167096509	3.16073788749029	2.83559652270769	2.78223369529398	2.79089590059845	1.3596654541288	0.0425169792054035	0.209390165561573
Merged-chr6-134120418-4	chr6	134120320	134120520	+	996.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	84720.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	4.73057682048202	5.1884565704884	4.96963559835024	4.55918532341924	5.52683508810553	5.73743219233387	5.20510242302095	4.43892032807244	0.808411974204809	0.0504086635943537	0.232928806823361
Merged-chr7-30806088-4	chr7	30805975	30806175	+	794.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	14902.0	NM_001168512	233079.0	Mm.97338	NM_146187	ENSMUSG00000051314	Ffar2	GPCR43|Gpr43	free fatty acid receptor 2	protein-coding	3.27691555292156	3.11482572007269	3.00698598295208	3.36151186179137	3.83474107154937	3.32749132503736	3.67563383081075	3.39260794563254	1.26704284335113	0.026285394806264	0.153647706078267
Merged-chr10-20390779-3	chr10	20390687	20390887	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42968.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	3.00722925955841	3.24980564177341	3.37595539590364	3.45300163598045	3.05779409875962	3.25333119445294	3.19318943677007	3.61599495398451	0.0210938655576494	0.9712309186787	0.989661202321986
Merged-chr4-62208530-4	chr4	62208429	62208629	+	916.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290353)	promoter-TSS (NM_001290353)	17.0	NM_001290351	22696.0	Mm.5011	NM_009554	ENSMUSG00000028389	Zfp37	Tzn|Zfp-37	zinc finger protein 37	protein-coding	5.29395056849746	5.30443950584724	5.37638123332527	5.65081395853462	4.4838647866905	4.64246882946131	4.67573982796284	5.0441212166313	-1.38385310069919	4.46874162687564e-05	0.00102573544101703
Merged-chr4-109476263-2	chr4	109476163	109476363	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013876, exon 1 of 3)	5' UTR (NM_013876, exon 1 of 3)	242.0	NM_013876	29864.0	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	4.4676745062177	4.49460812304318	5.12361619938638	4.67353083375539	5.04707375382698	4.95608895483999	4.83223868018093	5.54908794722338	0.813619847691248	0.0306573485379956	0.169685801834058
Merged-chr3-28081236-4	chr3	28081147	28081347	+	884.412476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 15 of 25)	intron (NM_008875, intron 15 of 25)	97076.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	4.3438411861052	4.52853915822675	4.80684361650889	4.50195261132159	4.29987042115275	4.4258122204054	4.45641173718133	4.59369050815038	-0.248677975829254	0.506490943127324	0.772262254800673
Merged-chr19-46500969-2	chr19	46500869	46501069	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053100)	promoter-TSS (NM_053100)	-679.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	3.64568212920353	3.653539685614	3.80260125303953	3.58924598344869	3.90101085119504	3.58474265129704	3.51773126111951	4.10350677628155	0.397188954128608	0.412482691223808	0.707583519920819
Merged-chr7-25396155-4	chr7	25396095	25396295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010719)	promoter-TSS (NM_010719)	-208.0	NM_010719	16890.0	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	6.51887359335361	6.65644556102432	6.38810930058333	5.98155221074407	6.32093015217189	6.56363129084316	5.85193242580242	6.25559300686855	-0.190998802037083	0.485991782964414	0.759731583591333
Merged-chr9-103230904-2	chr9	103230810	103231010	+	1000.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_133977)	promoter-TSS (NM_133977)	-624.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	5.30615868208327	5.33965038195865	5.27634599008777	5.91152710663381	5.2523760702843	4.93089460413967	5.31050855996622	5.30338929917887	-0.536198242667502	0.103553202125867	0.353601025383405
Merged-chr3-31425593-4	chr3	31425501	31425701	+	985.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-115282.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	6.0602706860126	5.86492777857319	6.71459277735795	6.94049261185872	5.64758472822962	5.18268010105042	5.98759480523482	5.52021361892194	-1.34651971441469	9.43169778192357e-05	0.00193302279418237
Merged-chr8-72321956-1	chr8	72321856	72322056	+	1000.0	f1_c57bl6.idr	TTS (NM_008452)	TTS (NM_008452)	2894.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	4.19005146974174	4.44398449422775	4.60952459793831	4.01508406541846	4.92503484937382	4.78363859254365	4.83752205796803	4.8583196842257	1.19030578485128	0.0013625222668162	0.0172936826729155
Merged-chr5-122820964-4	chr5	122820862	122821062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042491, intron 1 of 16)	CpG	380.0	NM_021505	59008.0	Mm.332667	NM_021505	ENSMUSG00000029472	Anapc5	2510006G12Rik|AA408751|AA536819|AA986414|APC5|Anpc5	anaphase-promoting complex subunit 5	protein-coding	5.97416948146103	6.21077297195433	6.17832024447673	5.72363824051745	5.80323641103064	5.98751934036483	6.0087865721717	6.03535912271754	-0.103061293807906	0.69093444354895	0.874233806014945
Merged-chr15-98871505-7	chr15	98871420	98871620	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033276)	promoter-TSS (NM_001033276)	-315.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	3.79752681063843	3.87072803986291	3.9469310800862	3.7683631333206	3.94291904280134	3.74749241906506	4.06158328179042	3.79592617573297	0.155958686376431	0.723316357028277	0.889557768663126
Merged-chr2-68472076-4	chr2	68471956	68472156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016866)	promoter-TSS (NM_016866)	-75.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	6.21866344608278	5.9934706391068	5.97213322133171	6.36789442393021	5.75424918847566	6.17103989195389	6.42464225498208	5.89763769290848	-0.122979125877829	0.65049984804691	0.853294802585927
Merged-chr5-99267535-4	chr5	99267419	99267619	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14592.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.23473994271092	5.69553944911919	5.38576010802886	5.63054921022083	5.19833654887661	5.13128138084394	5.20987991342186	4.98732684554006	-0.677526341637468	0.0242969459313587	0.145697472317669
Merged-chr12-73794243-4	chr12	73794186	73794386	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107038.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	4.97459511682662	5.29051509713063	4.86076538316382	5.09895577168985	5.48874770175143	5.25480970734411	5.21286895717096	4.81708080541626	0.288392328976362	0.383729085236102	0.685515575911105
Merged-chr11-61930324-4	chr11	61930225	61930425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019921)	promoter-TSS (NM_019921)	-68.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	7.35707487603443	7.77562377688642	6.93927298944562	6.96805748652681	7.72090819063943	7.59521285382122	7.49218840525685	7.33269870096148	0.322413117267471	0.178706312628161	0.474614254190511
Merged-chr11-46462183-4	chr11	46462109	46462309	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134250, intron 3 of 6)	intron (NM_134250, intron 3 of 6)	7278.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	5.3643245954474	5.72578301831191	5.58671212533114	5.76176888050207	5.22527152517436	5.31278781344259	5.53297074565437	5.13043171990309	-0.569509240692083	0.0494795491458705	0.230178128110654
Merged-chr3-139099488-4	chr3	139099407	139099607	+	808.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-24306.0	NM_001356388	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	3.63285662312073	3.76563456009217	3.86367924617193	3.94023848525324	4.02723025728814	4.1369528847646	4.12839016649991	4.2265993049841	0.836180568909584	0.0542437191853425	0.243247298372144
Merged-chr15-100102323-4	chr15	100102223	100102423	+	618.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 2 of 3)	intron (NR_037311, intron 2 of 3)	-52073.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	3.52252911914098	3.58904366257317	3.63301953642905	3.54041675290637	3.61368334656486	3.24157299753287	3.89620920635016	3.99010524373827	0.458280038719999	0.379494035390334	0.682018026184129
Merged-chr11-70656557-3	chr11	70656472	70656672	+	851.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276285)	promoter-TSS (NM_001276285)	-604.0	NM_001136062	13808.0	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	3.57741015964864	3.63057575890755	3.68413649518123	3.50456909173638	3.66684674578788	3.69485350931512	3.38886290835585	3.87074330794704	0.224610042270526	0.642698530588844	0.849327332982684
Merged-chr8-70172391-4	chr8	70172277	70172477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293797)	promoter-TSS (NM_001293797)	-31.0	NM_145597	234371.0	Mm.23488	NM_145597	ENSMUSG00000002342	Tmem161a	AI428876|BB161850|BC021367	transmembrane protein 161A	protein-coding	7.64650345086688	7.60073499022813	7.07037270597856	7.36257757987372	7.33960403294671	7.3796557073367	7.25386895360595	7.03986507592294	-0.238464371416342	0.248843750534295	0.56007881897978
Merged-chr3-32396301-3	chr3	32396191	32396391	+	973.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30626.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	3.67981978679252	3.39518761910809	3.87646198098673	3.86472451827853	3.57004792361908	3.79865914894041	3.81352855984289	3.56790419095176	-0.106538718189068	0.828812183269842	0.934292358503145
Merged-chr15-83442651-4	chr15	83442569	83442769	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	5211.0	NM_001358644	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	5.41352621303485	5.47163951635586	5.47091439685553	5.91384189616105	5.38161072436217	5.15223155257293	5.47058605523118	5.19094483398544	-0.517977729723819	0.0881527730930022	0.323918465547202
Merged-chr9-119937592-4	chr9	119937489	119937689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028976)	promoter-TSS (NM_028976)	-17.0	NM_028735	74052.0	Mm.189573	NM_028735	ENSMUSG00000032514	Ttc21a	4921538N17Rik|AA387572|Thm2	tetratricopeptide repeat domain 21A	protein-coding	7.2258855831674	7.34554502117938	6.72329607716255	6.98138905663155	7.53716466716036	7.53837578132138	7.3347417392774	7.09580092955475	0.409218495311524	0.0616617571451065	0.262713410885438
Merged-chr11-69012516-4	chr11	69012400	69012600	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR34C_MM|LTR|ERVK	-3411.0	NM_001281465	68964.0	Mm.285785	NM_001013256	ENSMUSG00000020898	Ctc1	1500010J02Rik|AAF-132|AAF132	CTS telomere maintenance complex component 1	protein-coding	5.68662875045298	5.84993703074606	5.23109254467881	5.18100853357944	5.48166912863353	5.62646015472416	5.5596822101135	5.50379599770295	0.0566102643268291	0.853299657912952	0.944764440495676
Merged-chr3-21808330-3	chr3	21808228	21808428	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-268324.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.00887304977325	4.7215610837278	4.65414565218613	5.03809603957059	4.40749786767792	3.98222226426428	4.08705851708179	4.31084487408869	-1.49086553259404	0.000230728926444494	0.00408838791520852
Merged-chr17-26571106-4	chr17	26571016	26571216	+	964.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	9604.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	4.45609927188108	4.34789893437066	4.41288205461039	4.54161861257984	4.6517285594748	4.49663589553176	4.59707898647592	4.7590418830077	0.403026513009632	0.257878408129006	0.569693582005417
Merged-chr11-68867338-4	chr11	68867239	68867439	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14208.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	5.32840214684629	5.16213514218772	5.00078269823445	5.29670340545174	5.27832575719856	5.28406133628078	5.11746922635213	5.53786235118332	0.184343695137391	0.538650018967251	0.791679929829652
Merged-chr17-26462772-4	chr17	26462685	26462885	+	911.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45687.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	5.01098126904787	4.97058393266424	4.47378342905984	4.73985135522917	5.0601349264949	4.74310610190358	4.58857734674603	4.84127721007455	0.034746992956543	0.922829841947864	0.971413012934631
Merged-chr5-121711674-6	chr5	121711549	121711749	+	995.4815060000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009125)	promoter-TSS (NM_009125)	40.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	4.49406374647097	4.89843233431977	4.85663575706385	4.62075159934388	4.99673390482053	4.88266630387345	4.22335652331116	5.10603685186127	0.251976348915517	0.519574601726793	0.780194940641986
Merged-chr11-87422581-4	chr11	87422474	87422674	+	878.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	intron (NM_031386, intron 1 of 30)	-5017.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	3.98295217116807	3.91192270684905	3.82879734975648	3.90280367395163	4.21479035090606	4.20109905534389	3.91772097285785	3.9811776471474	0.49088172336936	0.243754117232626	0.554761768521218
Merged-chr2-132112478-4	chr2	132112362	132112562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	32646.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	5.85807041853744	6.67433823446732	5.62805623889904	5.49054288262902	6.0325571972374	5.72075528784233	5.75707210969508	5.78250371775952	-0.269223618605431	0.431141054338175	0.721486037975084
Merged-chr13-81129040-3	chr13	81128959	81129159	+	679.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	L1MA6|LINE|L1	164985.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	3.5807751191736	3.3010370908052	3.52915466372474	3.39530071928545	3.43190198836546	3.59028990292736	3.46131729220659	3.57920552056638	0.216186188208139	0.662966918679484	0.860346663968351
Merged-chr14-74990677-4	chr14	74990585	74990785	+	650.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15599.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	3.73649518823592	4.01032855027696	3.62238153302565	3.75186072847713	4.00492791662877	3.91045710188609	3.8265489920899	3.98338540647372	0.416655670193947	0.349380744987722	0.656941686201213
Merged-chr16-91386142-1	chr16	91386042	91386242	+	687.0	f0_balb.idr	intron (NM_001347258, intron 4 of 7)	intron (NM_001347258, intron 4 of 7)	13359.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	3.70705577347308	4.17327868815561	3.91104031059611	3.73285706969416	3.81120954978825	3.82639020318885	3.63759781582517	3.70553848550727	-0.412852571858835	0.379611653687413	0.682157007046657
Merged-chr1-61146278-4	chr1	61146193	61146393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	168379.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	6.00305997295698	6.02806686581682	6.48113384131547	6.62114414217919	6.14010384263725	5.65207034155612	6.47905657653606	6.59734958965764	-0.0821351341966199	0.785734018901797	0.916623153837762
Merged-chr15-57693199-4	chr15	57693112	57693312	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1455.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	4.79251927559018	4.84536503151227	4.37325183857422	4.61509274774942	4.89401754143496	4.7332205860888	4.87255594738117	4.55501115348812	0.228154396183092	0.519806076667381	0.780328519057418
Merged-chr9-101097838-2	chr9	101097738	101097938	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100451, intron 1 of 1)	intron (NM_001100451, intron 1 of 1)	23076.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	2.76301070396508	3.14756361797254	3.16908031929746	2.65601732694885	2.77989101371954	3.50353453686566	3.26661188177649	3.27909670675307	1.08672304784946	0.100717918092726	0.348392490833228
Merged-chr13-46930957-1	chr13	46930857	46931057	+	548.0	f0_c57.idr	Intergenic	Intergenic	-1239.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	3.26096398789614	3.28221213607016	3.14388186790635	2.84428909897917	3.34785903109149	3.19202621237031	3.35478427536585	3.14231306050882	0.500945222327216	0.382395988367196	0.684468240607269
Merged-chr6-84026318-4	chr6	84026179	84026379	+	833.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310152, intron 1 of 53)	intron (NM_001310152, intron 1 of 53)	6893.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	3.54935395129225	3.66973336667528	3.18650214209061	3.61335059230775	3.50941765146128	3.55382335604169	3.36870532297151	3.64923271724738	-0.00401759306924265	0.99382954232316	0.997702270136287
Merged-chr10-25128620-4	chr10	25128505	25128705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	71565.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	5.7744357044343	5.64830759876898	6.04805019687204	5.66905916096021	5.28790009197411	5.69263235539832	5.62384003203822	5.56852844991952	-0.411527402258943	0.13904273986182	0.414593226669937
Merged-chr10-8912408-4	chr10	8912296	8912496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26326.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	7.9552096776623	8.21423500707626	8.31090019360456	8.21718878659913	7.71090178106606	7.84998699264	7.98689857260549	8.12866456090912	-0.332466483589513	0.0616186265456126	0.262663326080378
Merged-chr19-43670766-4	chr19	43670641	43670841	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145156, intron 1 of 3)	intron (NM_145156, intron 1 of 3)	4140.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	4.71895794461297	5.27172297613572	5.15277761121519	4.69224953805618	5.97438935478183	5.86991884166746	6.09310431386879	6.37174811866257	1.91438454932332	2.8722067924311e-10	2.05261854697242e-08
Merged-chr11-89025722-4	chr11	89025615	89025815	+	987.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26312.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	4.71071084899463	5.35272216569078	4.9001346651399	4.57499580974573	4.89325509078256	5.07329832110245	4.32069739508157	4.89680487167932	-0.183618226945711	0.646349350947517	0.851295585787822
Merged-chr19-6276092-4	chr19	6275981	6276181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010119)	promoter-TSS (NM_010119)	-815.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	7.22222726293185	7.87141844606252	7.34097452999763	6.8389537703771	7.51435568281407	7.46623171451637	7.10664136157688	7.29441746084642	-0.015458864012042	0.951321579070001	0.982674271153184
Merged-chr1-144245065-4	chr1	144244960	144245160	+	932.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_015811, exon 5 of 5)	3' UTR (NM_015811, exon 5 of 5)	4044.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	5.40602040780385	4.85578768484446	4.74778910616375	5.07576334760073	4.46327445793845	4.6211492555165	4.60290923561796	4.89293012985132	-0.816368379533416	0.0249978735819249	0.148425395703022
Merged-chr6-124996768-4	chr6	124996677	124996877	+	867.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175696)	promoter-TSS (NM_175696)	57.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	3.361974862707	3.36366409776536	3.59636053964296	3.34085869372585	4.01175118828567	3.71445856850151	3.52776628595122	3.69707670192626	1.09606998582091	0.026258065739257	0.153527540719898
Merged-chr18-54989271-4	chr18	54989179	54989379	+	953.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 1 of 8)	intron (NM_001360787, intron 1 of 8)	901.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	5.25228809740462	4.85062347627628	4.98373222500654	5.05612022376503	4.71640914243007	5.15489710117516	4.74204414627569	4.72063564462424	-0.409068255807742	0.225396410181435	0.533768875147365
Merged-chr2-60076952-3	chr2	60076854	60077054	+	944.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	48786.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	4.38320977111637	4.70896385936279	4.58601013759247	4.74606586633824	3.88141087027546	4.21783459345053	4.6703892569566	4.08838905305363	-0.884746569109706	0.0388754422766263	0.19804717333295
Merged-chr11-55116141-4	chr11	55116026	55116226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18141.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	5.42630216900496	5.53248279176569	5.80617569279622	5.51071896760403	5.96558183932404	5.8587200486112	5.88774752408312	5.91380397317702	0.560435375303671	0.0275531168095643	0.158365899659882
Merged-chr1-173429782-4	chr1	173429634	173429834	+	889.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 2 of 8)	intron (NM_001013779, intron 2 of 8)	9130.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	3.34401798931958	3.23121299598256	3.14319468397594	3.04432907310153	3.92944219102493	3.63880795398469	3.60885717652835	3.80955718513829	1.96204364312144	0.00011023841065719	0.00220102660088867
Merged-chr5-125341872-4	chr5	125341704	125341904	+	801.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205082)	promoter-TSS (NM_001205082)	-710.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	3.40817499666114	3.52093517881178	3.66673362578139	3.50253925534874	3.45233924707432	3.52206160867741	3.27829510157179	3.40685482738406	-0.368604716765278	0.465368787650784	0.745811792142008
Merged-chr6-113668887-4	chr6	113668801	113669001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172161, intron 3 of 12)	intron (NM_172161, intron 3 of 12)	-28149.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	8.43878521452115	8.60380508878017	8.64475160388023	8.09319620992704	8.30442684716953	8.59248363748577	8.21646540342314	8.1137774970532	-0.175583796287897	0.366495437336556	0.670904475842366
Merged-chr19-6924699-4	chr19	6924609	6924809	+	789.924988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008431)	TTS (NM_008431)	671.0	NM_001039494	67077.0	Mm.251306	NM_001039494	ENSMUSG00000050623	Catsperz	1700019N12Rik|A430107B04Rik|MLZ-622|Tex40	cation channel sperm associated auxiliary subunit zeta	protein-coding	4.69071504567429	4.54874803426602	4.971515427645	4.50447693078344	4.36706316793809	4.12707024747072	4.34798050595101	4.68836579113544	-0.650416968214068	0.100795966106689	0.348499347719824
Merged-chr8-82402822-4	chr8	82402716	82402916	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001254747)	promoter-TSS (NM_001254747)	-230.0	NM_008357	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	6.10374245324395	6.17298025722266	6.06577091472499	5.25520719105187	6.43195220499433	5.87807615599611	5.58968474277053	5.26032364238814	-0.109347793738263	0.76705469449163	0.908863633051277
Merged-chr7-84163775-4	chr7	84163667	84163867	+	954.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11874.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	4.45437599197407	4.46663717160175	4.66780434596199	4.60448566257912	4.92892197443336	4.80167148122035	4.98440764305672	4.58391280694272	0.598138523736404	0.0840136633936644	0.315218414775059
Merged-chr3-103279120-4	chr3	103279044	103279244	+	884.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053170)	promoter-TSS (NM_053170)	-149.0	NM_001079830	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	4.46134096213521	4.48916452121909	4.25429445143114	4.15837671556935	4.13003653517298	4.07462049414487	4.09407634454461	4.49680361983137	-0.320514569376609	0.434973159921808	0.724182035180557
Merged-chr9-45221760-4	chr9	45221668	45221868	+	955.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	-17693.0	NM_145403	214523.0	Mm.436756	NM_145403	ENSMUSG00000032091	Tmprss4	mCAP2	transmembrane protease, serine 4	protein-coding	4.88235732183484	5.11324532305453	5.14700003667164	4.93618650279096	5.14137546984921	4.9041064560041	4.74605511303151	4.68242470654306	-0.24853989881419	0.458090576779319	0.741072050832408
Merged-chr3-108840278-1	chr3	108840178	108840378	+	1000.0	f0_c57.idr	intron (NM_011504, intron 1 of 18)	CpG	224.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	6.05071662324686	5.72304450544103	6.05178773612745	6.01489537839526	6.06496213409855	6.67548959152957	6.20100886366683	6.30136745559674	0.543740510101641	0.0337415548789385	0.181095621680589
Merged-chr1-120443439-4	chr1	120443318	120443518	+	954.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	61606.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	4.43619653524437	4.33711318357756	5.07983173902275	4.96280651539591	4.6596394308397	4.56843541530962	4.37059563720748	4.83016598973657	-0.280861854285334	0.485440492629061	0.759349088660037
Merged-chr2-145858625-1	chr2	145858525	145858725	+	558.0	f0_balb.idr	intron (NM_028724, intron 8 of 12)	intron (NM_028724, intron 8 of 12)	-44616.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	2.75008988518543	2.80737310103972	2.97001301304916	2.77567788328325	2.52545063036059	2.65678790462238	2.61506451298558	2.48209854910583	-1.37634120142662	0.0454346378578125	0.218325188245342
Merged-chr2-159557710-4	chr2	159557619	159557819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-389622.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	6.29682703728748	6.55369601487707	5.90203410332506	6.61529726617251	6.34567453058141	6.56466565303648	6.35635213912934	6.33065278734338	0.0166721447361984	0.947226787949541	0.981107020262516
Merged-chr17-29496508-4	chr17	29496317	29496517	+	905.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008842)	TTS (NM_008842)	5372.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	2.91411800655532	3.51337923593648	2.76577980919436	2.46152749122524	3.32294999862516	3.40087334476023	3.09918399561673	3.10968984729057	0.948064974137437	0.196560263068707	0.49766951412921
Merged-chr10-22302547-4	chr10	22302462	22302662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-4158.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	7.53054942789987	7.46365749484693	7.41673725742083	7.89289830461322	6.72602419289931	6.75812486916237	6.84600314973299	6.49879857534722	-1.21562699005451	7.69068809988069e-09	4.16602350275044e-07
Merged-chr5-121453978-4	chr5	121453856	121454056	+	886.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029912, intron 1 of 9)	RMER10A|LTR|ERVL	1247.0	NM_029912	77462.0	Mm.358781	NM_029912	ENSMUSG00000029452	Tmem116	4930406A18Rik|4930513P12Rik|C030022K24Rik	transmembrane protein 116	protein-coding	3.94748098823241	3.65387083107403	4.09179174921571	4.32379184020891	4.00882407640174	3.78611282707379	3.93166310148957	4.37158346728962	0.0113000515866769	0.981246543483888	0.993261294670492
Merged-chr8-74994034-4	chr8	74993943	74994143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178017, intron 1 of 10)	CpG	393.0	NM_178017	70823.0	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	6.34120615978449	6.23540398058361	6.03821560733593	6.02012784248439	6.07240128786149	5.87345129922313	6.25893367419504	5.94488628958842	-0.168275924814473	0.491838962453474	0.763211244010156
Merged-chr2-126932035-1	chr2	126931935	126932135	+	576.0	f0_balb.idr	intron (NM_023220, intron 1 of 14)	intron (NM_023220, intron 1 of 14)	1200.0	NM_023220	66552.0	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	3.86586890779577	3.95407724708094	3.38720779075607	3.31080899695435	4.13641320781452	4.42144188576035	3.74592634752734	3.70375038158496	1.05731131560368	0.0481143866472227	0.226297013604367
Merged-chr13-103921553-4	chr13	103921476	103921676	+	973.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289474)	promoter-TSS (NM_001289474)	-990.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	5.09864941138955	5.07318033812463	4.97079441276776	4.58030989572066	5.20760480892673	4.75729002969213	4.72724835972803	4.86160194781919	-0.0318515033803131	0.929452202359591	0.974513777866012
Merged-chr7-46987111-3	chr7	46986993	46987193	+	918.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033461, intron 4 of 4)	intron (NR_033461, intron 4 of 4)	10461.0	NR_033461	629141.0	Mm.229259	NR_033461	ENSMUSG00000056509	Gm9999	-	predicted gene 9999	ncRNA	3.93796734283868	3.65125427726874	4.22481224841761	3.98662502149908	3.6705836286641	3.7391414111726	3.55160554791052	4.06848535440972	-0.568022251758202	0.244341733368513	0.55551297557932
Merged-chr5-108660312-1	chr5	108660212	108660412	+	567.0	f0_c57.idr	promoter-TSS (NM_172997)	promoter-TSS (NM_172997)	-19.0	NM_008325	15932.0	Mm.358608	NM_008325	ENSMUSG00000033540	Idua	6030426D08	iduronidase, alpha-L-	protein-coding	3.49040376500788	4.08413824379248	3.77799938880122	3.44076003550134	3.54505301312852	3.79057482338328	3.99454205922701	3.96698935832758	0.327852463896273	0.52078251708359	0.780987248935885
Merged-chr7-122317662-3	chr7	122317565	122317765	+	856.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	ORR1E|LTR|ERVL-MaLR	28540.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	3.79428947314507	4.08358066182066	4.0794840598004	3.5405381562325	3.89266920456517	3.74376796356706	3.97374202416505	3.79267421680737	-0.0767461758117698	0.871898474406538	0.95183223179801
Merged-chr12-16894079-4	chr12	16893976	16894176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009072)	promoter-TSS (NM_009072)	-902.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	7.67029835150689	7.70048758568519	7.65499102764323	7.85080863934343	7.56653776539799	7.52112125951233	7.66654880852211	7.33839109858842	-0.261240186094484	0.135536663335786	0.409815417471255
Merged-chr4-115838405-4	chr4	115838299	115838499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021461)	promoter-TSS (NM_021461)	-799.0	NM_001285488	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	5.78547008014256	5.24472354066337	5.17354701660082	5.16785959768598	5.88991347592958	6.0915533414941	5.73352127071263	5.9751703214241	0.958485345048584	0.000917790134015614	0.012575049845832
Merged-chr4-95048855-4	chr4	95048748	95048948	+	848.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010591)	TTS (NM_010591)	3374.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	4.0090678763595	4.4307722689736	4.34279454840165	4.36976327641271	4.25083273543969	4.38272682654401	4.09674972477865	4.29747269886786	-0.112087606502972	0.778717336476535	0.913781420202775
Merged-chr15-58746349-4	chr15	58746256	58746456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77071.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	5.70119159323231	5.99252669042577	6.25598098553691	6.13839173286888	6.14883041096425	6.27841740490516	6.03156765217195	5.85460057761807	0.068027662542176	0.790766325798383	0.918885370783943
Merged-chr19-41982123-4	chr19	41982043	41982243	+	942.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	CpG	380.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	4.42939939795527	4.43693976060811	4.38972385671723	3.79524077337364	4.25445329423939	4.38844794077141	4.28540009077357	4.25758282387256	0.0521638823363153	0.903506773026809	0.964287824952031
Merged-chr5-123137806-4	chr5	123137710	123137910	+	963.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4383.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	5.02505566803614	5.35439817393329	5.02589537637005	5.3297761071138	4.67287468401863	4.97766854744853	5.19246033421485	5.08988577511857	-0.416350914022276	0.206809709721856	0.510809505458117
Merged-chr17-81599348-3	chr17	81599246	81599446	+	906.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	139041.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	4.14249328957428	3.59505152425462	3.62331392409718	4.29092395237427	3.64798550035737	3.6821592701095	3.28695618693463	3.93026264083487	-0.874382925434416	0.114740668262895	0.374724754589796
Merged-chr6-135228515-4	chr6	135228393	135228593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028982, exon 10 of 13)	exon (NM_028982, exon 10 of 13)	19391.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	6.38317368656215	6.58632654020922	6.91147351263882	7.04421390954799	6.7929895867337	6.99338289871246	7.14449401803567	7.09963312406759	0.332619124271238	0.155650148712017	0.441412882392632
Merged-chr2-71505066-4	chr2	71504967	71505167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025633, intron 1 of 9)	intron (NM_025633, intron 1 of 9)	-24378.0	NM_010053	13390.0	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	6.4732839625835	6.18126845597629	6.55144072843778	6.78751664586158	5.78190394970721	5.83598562302424	6.19752130249554	6.03822491421697	-0.850750978239644	0.000934775195641427	0.012739108491396
Merged-chr1-171503500-4	chr1	171503403	171503603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019484)	promoter-TSS (NM_019484)	25.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	6.65287204430605	7.00573042745487	6.55702822004424	6.59925493414256	6.87704328572321	7.04410466707193	6.82123533243796	6.63363428461299	0.194459439788763	0.375185066364347	0.678229786380898
Merged-chr3-88620885-8	chr3	88620770	88620970	+	856.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008487)	promoter-TSS (NM_008487)	-236.0	NM_008487	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	3.50619640454863	3.63182276405573	3.67835500391846	3.43237713150589	3.73611800458001	4.04504707386503	3.55285913363738	3.96308516968395	0.83847070011739	0.0791325578341979	0.30441082892472
Merged-chr15-81856273-4	chr15	81856175	81856375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020507, intron 1 of 1)	CpG	2051.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	7.01902926550105	7.37597429780041	6.95443074064844	6.93415575181606	7.26990600053941	7.19777743354277	7.6667522582595	7.19421879290142	0.36145806694508	0.0919865367752471	0.331706963685058
Merged-chr1-179517172-4	chr1	179517086	179517286	+	922.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	855.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	4.74926936155368	4.95172536676355	4.59790461899635	4.63359563384083	4.60973654079835	4.40787149353731	4.6913540021801	4.42250600155483	-0.42137894737868	0.242363327285498	0.553081694951968
Merged-chr2-26964376-4	chr2	26964263	26964463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207234)	promoter-TSS (NM_207234)	23.0	NM_207234	227656.0	Mm.291874	NM_207234	ENSMUSG00000052406	Rexo4	Gm111|Rex4|Xpmc2h	REX4, 3'-5' exonuclease	protein-coding	6.01807719087198	5.78920670454844	5.50820871543677	5.60053560310538	5.88398860938128	5.85212119257011	5.84078539785031	5.77317646686202	0.173754443144518	0.50712179505305	0.772710503440438
Merged-chr1-97673639-3	chr1	97673545	97673745	+	698.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-11627.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	3.46006521772669	2.98911978843008	3.20759018628163	2.99578710491147	3.2421912438428	3.07075271736327	2.95240106409978	3.0887758330052	-0.283677315762725	0.63378421149031	0.844859659706135
Merged-chr10-79997314-4	chr10	79997215	79997415	+	811.148804	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013850)	promoter-TSS (NM_013850)	-293.0	NM_001347081	27403.0	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	3.6450596996691	3.51494412788636	3.69970290886668	3.67113758342721	3.75492889618497	4.01747282179699	3.73613557362539	3.74950756341536	0.538221474000868	0.240681986856266	0.551295043899394
Merged-chr11-118148776-9	chr11	118148742	118148942	+	966.0793460000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19623.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	4.63767222953786	4.18339991582235	4.22692742537748	4.90142211591351	4.16274364665074	4.14274289098603	4.20878602814059	4.56310522492211	-0.604430529640109	0.165692067345183	0.456574842387784
Merged-chr7-63980288-4	chr7	63980180	63980380	+	901.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-41365.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	4.88488471640181	4.60454548495001	4.34550795898133	4.6543394329678	4.58104778109595	4.37430438109303	4.41841306232699	4.75026708267873	-0.207497402250861	0.578465478012964	0.814709318733746
Merged-chr9-104252677-3	chr9	104252566	104252766	+	745.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 1 of 56)	Tigger7|DNA|TcMar-Tigger	10264.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	2.99004213228239	3.0294008325075	2.93101879349009	2.86670469691487	3.0903445015567	2.76623414768698	2.65580676870331	3.04550772410918	-0.190153386516767	0.764784799275031	0.907812114625849
Merged-chr1-177491201-4	chr1	177491087	177491287	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45366.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	5.28543950785012	5.1985626121911	5.45258605360077	5.32633302016527	5.23742095288328	4.96623022201472	4.9999891236877	5.31193221666838	-0.320015000917983	0.286497337324375	0.598146070261099
Merged-chr10-85928607-4	chr10	85928505	85928705	+	869.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163614, exon 1 of 1)	exon (NM_001163614, exon 1 of 1)	114.0	NM_001163614	67341.0	Mm.382315	NM_001163614	ENSMUSG00000085111	Ascl4	1700054F16Rik|bHLHa44	achaete-scute family bHLH transcription factor 4	protein-coding	4.04548790618472	3.99046212817723	3.63616833542727	3.73091953168349	3.9265741868158	3.75472240281281	4.19012937511397	3.74930971604198	0.178743902091917	0.700261154602899	0.879054781621322
Merged-chr10-39171294-4	chr10	39171191	39171391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7497.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	6.31791048922646	6.60956772813743	5.83986457252539	6.28283353484692	6.29021837623754	6.54731810608179	6.19303608749131	6.09750995787593	-0.00634843243757801	0.980566412903907	0.99281244474172
Merged-chr4-151859407-3	chr4	151859294	151859494	+	911.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 1 of 23)	intron (NM_001081557, intron 1 of 23)	2374.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	3.91877436090495	3.7148966409784	3.67658168929819	3.74208737258177	3.32829557300918	3.49379890169776	3.60779489510874	4.04261530570131	-0.372428901672537	0.468758070148321	0.747931420316418
Merged-chr16-20549036-2	chr16	20548936	20549136	+	971.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030670)	promoter-TSS (NR_030670)	433.0	NM_013852	27406.0	Mm.27135	NM_013852	ENSMUSG00000003234	Abcf3	AI326318|AU016058|BB119416	ATP-binding cassette, sub-family F (GCN20), member 3	protein-coding	3.00250679203959	3.12892284656675	3.24452092012224	3.10953454465551	3.27583443361463	3.17609506034089	3.11807414971439	3.34790587778336	0.429830203273626	0.431117446988758	0.721486037975084
Merged-chr10-81015064-4	chr10	81014964	81015164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010319)	promoter-TSS (NM_010319)	-139.0	NM_010319	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	8.68959729480734	8.81908474371365	8.50406341888255	8.41342852291407	8.553464025813	8.57938275302414	8.50820476594805	8.21870412725887	-0.175149112814736	0.312601145944637	0.62451046865229
Merged-chr9-83536755-4	chr9	83536630	83536830	+	847.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-11608.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	4.38310640671862	3.96468809310691	4.26319882350219	4.14301054160429	4.41955255422814	4.20677242241045	3.79923347475682	3.97874078384705	-0.149736261232339	0.736150597847396	0.895884000208244
Merged-chr5-143629900-3	chr5	143629793	143629993	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011182, intron 1 of 12)	intron (NM_011182, intron 1 of 12)	7446.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	3.84331220034728	3.4176362920043	3.47973683509066	4.04399138314951	3.68175597330835	3.46742631822801	3.73412760291094	3.53664727313244	-0.380109134152893	0.47062284366039	0.749281674465736
Merged-chr5-17858093-3	chr5	17858009	17858209	+	925.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	RMER1B|Other|Other	-8317.0	NM_001159556	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	3.20085966740715	3.13997060702268	3.68794190282273	3.13072015116711	3.10382404791271	3.05083366878877	2.85908590950677	3.36591229742636	-0.755424214663236	0.222941495238376	0.531069778572449
Merged-chr11-79305835-4	chr11	79305719	79305919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34073.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	6.66408995928799	6.7506965116354	6.39923644244997	6.56083303610297	6.74800343084608	6.88509220736651	6.23060640517578	6.69011167881443	0.0885042673469295	0.703521492498068	0.880741625705568
Merged-chr10-54073712-2	chr10	54073612	54073812	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	2084.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	3.29875059879892	3.12096660841642	3.19615624823052	2.91812719845524	3.02929622013572	2.93294559335216	3.0722350069877	2.75130005380505	-0.747171700356587	0.226738015247437	0.535378510111041
Merged-chr9-53254542-2	chr9	53254442	53254642	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6430.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	3.31737529743771	3.24743331804068	3.00844850903564	3.41405699661779	3.31617332328247	3.31322058193594	3.35815499293952	3.2011298168607	0.120512357324522	0.826386083215932	0.933434921563203
Merged-chr8-71948869-3	chr8	71948804	71949004	+	656.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2162.0	NM_001164581	234413.0	Mm.334607	NM_001164581	ENSMUSG00000052446	Zfp961	A230105L22Rik|BC065788|mszf37|mszf55-2	zinc finger protein 961	protein-coding	3.24276473100468	2.89830265383023	3.5206501436605	3.12849997714177	3.54563749504398	3.5868506866014	3.34806266137242	3.35950217740844	0.900743261235219	0.110340484356438	0.366817305871136
Merged-chr8-119779528-4	chr8	119779432	119779632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1116.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	5.40157414962023	5.53617618797503	5.27736082915331	5.54275686959837	5.66115531759156	5.81890393351362	5.46213989695751	5.59327995006155	0.316085616073675	0.248012913341385	0.559137354284593
Merged-chr3-52361055-4	chr3	52360957	52361157	+	898.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92720.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	4.30847399459728	4.6459807724446	4.35301776193187	4.46986359615035	4.20533154191707	4.07697379119548	4.41621041670821	4.39268359387619	-0.425235313423347	0.27645642059085	0.588504895079849
Merged-chr12-80279637-4	chr12	80279554	80279754	+	961.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-19273.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	5.00936926514721	4.78635952126999	4.74958190197109	5.12961010202838	5.16051016536753	4.9264324074023	5.05100320462588	5.07235786699038	0.225037281090692	0.487662318977175	0.761029492939781
Merged-chr6-66897379-3	chr6	66897283	66897483	+	766.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177558, intron 1 of 4)	intron (NM_001177558, intron 1 of 4)	492.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	3.54451274352899	3.54644521028934	3.37682729102529	3.68063474103443	3.5327643718637	3.36246620350721	3.63050258522321	3.37517684018661	-0.224421550999876	0.657579089441428	0.857390815470524
Merged-chr2-14073198-1	chr2	14073098	14073298	+	577.0	f0_balb.idr	promoter-TSS (NM_001356337)	promoter-TSS (NM_001356337)	736.0	NR_038162	70957.0	Mm.399049	NR_038162	ENSMUSG00000086657	Stamos	4921530L18Rik	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, opposite strand	ncRNA	3.4598349937004	3.43026586325265	3.7569306120803	3.37085600283971	3.32436556771341	3.51820960878059	3.39068595125083	3.45841578393336	-0.284962644248246	0.578768305703342	0.814949494890204
Merged-chr17-78939194-4	chr17	78939094	78939294	+	950.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028611, intron 3 of 9)	intron (NM_028611, intron 3 of 9)	2059.0	NM_028611	73694.0	Mm.104959	NM_028611	ENSMUSG00000024082	Ndufaf7	2410091C18Rik|AL033374|PRO1853	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7	protein-coding	5.11383409141479	4.98946980359599	4.88494946255021	5.4134289994978	6.59428949503932	6.99711082964369	6.77456097715463	6.54955481324183	2.4925564102959	2.61683931231844e-16	5.24687339187364e-14
Merged-chr7-68059963-3	chr7	68059862	68060062	+	909.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	107705.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	3.2438480851157	3.31286709084259	3.54074341183407	3.99050296258549	3.41258980741612	3.60188373971852	3.5265190962572	3.36926799750867	-0.308784783023624	0.587213456333599	0.819100437669827
Merged-chr2-180589390-4	chr2	180589395	180589595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031373)	promoter-TSS (NM_031373)	88.0	NM_031373	72075.0	Mm.250418	NM_031373	ENSMUSG00000049401	Ogfr	2010013E17Rik	opioid growth factor receptor	protein-coding	6.32234570445292	6.24659780722658	6.44570747550036	6.3449338539131	6.27623448277112	6.42397122941797	6.49288728986619	6.14216483393291	-0.00428901077324632	0.984619765562036	0.994356719345935
Merged-chr19-24987539-4	chr19	24987439	24987639	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	-11990.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	5.20104781916961	5.10887617396561	5.59230319541059	5.24668756886744	5.49770021645964	5.20537471793258	5.46486525305933	5.13138683943473	0.0886307668472766	0.771210406874557	0.91036734532567
Merged-chr2-101767381-4	chr2	101767267	101767467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 3 of 8)	intron (NM_001355625, intron 3 of 8)	30340.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	5.07279825982324	4.97895363309125	5.13490878415732	4.63252255827911	4.68579549350486	4.93056394942002	4.84651082621479	5.07016021001876	-0.135161271667626	0.696301702232189	0.877172308963588
Merged-chr3-95818193-3	chr3	95818088	95818288	+	783.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081293, intron 1 of 10)	intron (NM_001081293, intron 1 of 10)	765.0	NM_001081293	75137.0	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	3.37476188460056	3.47414506070801	3.85120027184931	3.61525468760344	3.40893919149294	3.55332475634279	3.5400749751419	3.93383940960097	0.0942521173875054	0.855087421970473	0.945424485789793
Merged-chr14-122013807-4	chr14	122013703	122013903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 8 of 8)	intron (NM_026861, intron 8 of 8)	-20871.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	6.37681787987719	6.47557451831246	6.1323018132255	6.62992182317265	5.8717842922749	6.32940804211332	6.27498497090237	5.82328067477649	-0.519244862074474	0.0437886592462614	0.21310221362571
Merged-chr6-50109535-3	chr6	50109426	50109626	+	881.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164734)	promoter-TSS (NM_001164734)	-715.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	3.06461305499795	3.11493866519313	3.12516247243085	3.0599175006221	2.96500443997657	2.90045307695438	2.99189160964708	3.52285197853486	0.11577840335948	0.847422263426616	0.94229862509259
Merged-chr5-16047535-4	chr5	16047417	16047617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110843, intron 3 of 38)	intron (NM_001110843, intron 3 of 38)	112826.0	NM_001110844	12293.0	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding	6.20974966100742	5.8790338471159	6.24785108762186	6.40441161440933	5.77046033165326	6.16174653721854	6.40071664683248	5.52829303014511	-0.310558351229625	0.288478445042037	0.600468102691752
Merged-chr11-97400518-4	chr11	97400413	97400613	+	966.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37962.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	5.23420715849701	5.35814616540244	4.88703728855927	4.99138470388133	5.6307708030694	5.21370738970226	4.94094161146453	5.16909158656825	0.279129859168124	0.405435989441462	0.702273581691623
Merged-chr17-69204785-4	chr17	69204668	69204868	+	899.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	Lx8b|LINE|L1	45412.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	5.03629120320841	4.19958104307609	4.69965797333715	4.73296708516244	4.3144595873606	4.26048314128749	4.21929987708842	4.37789544850884	-0.920347731812502	0.0240708335617648	0.144811001625477
Merged-chr1-131549207-3	chr1	131549101	131549301	+	941.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21298.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	4.05903872823969	4.1182428948084	3.7853541659695	3.76511647892446	3.90838401303299	3.25683314329861	3.6646746829081	3.62055340478052	-0.874549745141371	0.0993599620879479	0.345718426272122
Merged-chr15-96697115-4	chr15	96697023	96697223	+	875.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355633, intron 3 of 14)	intron (NM_001355633, intron 3 of 14)	2605.0	NM_001355633	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	3.87465195196647	3.90533681837536	3.57696365402994	3.64421343839605	4.27357294985139	4.10282986425955	4.47575458600688	4.02428239589289	1.29435691094419	0.00309053973097045	0.0327237843462792
Merged-chr13-46062941-4	chr13	46062846	46063046	+	884.854126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97955.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	4.27675359161845	3.85229621356332	4.1486908456054	4.09064306722864	4.03576564491204	3.96606392298999	4.1742696889542	4.27467480918641	0.0504310573409516	0.904328180904315	0.964559678221358
Merged-chr11-118135429-4	chr11	118135340	118135540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6221.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	6.05864376754729	5.6798986411156	5.67072942947128	5.75165059423571	5.63334317693855	5.2110596487289	5.85021907737423	5.31959058248218	-0.435823815066405	0.138573088877531	0.414119317038113
Merged-chr17-29000631-4	chr17	29000531	29000731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357173, intron 1 of 13)	MTE2a|LTR|ERVL-MaLR	7364.0	NM_134115	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	5.94609038369898	6.41732218372494	5.61540790761147	5.93185446124324	6.00192891185936	6.05402508812199	5.72424193775753	6.1107537263342	-0.0505133484909948	0.85651472926519	0.945996478792159
Merged-chr1-181545585-3	chr1	181545488	181545688	+	906.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34137.0	NM_207280	403180.0	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding	3.54352468067596	3.49555377000066	3.26228152531712	3.5100512751139	3.42819894777857	3.37361929058414	3.47844863610045	3.38068693463423	-0.153947930203759	0.76125907828705	0.906512173824769
Merged-chr10-96503467-3	chr10	96503361	96503561	+	608.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113540.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	3.55227673747305	3.17458076729134	3.73044469424679	3.35871984323104	3.2507895630186	3.21112188277611	3.08982985090841	3.09817121623555	-1.09909320779065	0.0562177877866702	0.24827982359418
Merged-chr4-128839331-4	chr4	128839238	128839438	+	848.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-33226.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	3.49070189793525	3.75845042115566	3.61168566482909	3.70546508961609	3.94280467822793	3.60733104755806	3.80777388506894	4.12407494838331	0.688573549993261	0.145055730858301	0.424335108777044
Merged-chr1-78666158-4	chr1	78666039	78666239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001136226, exon 4 of 4)	exon (NM_001136226, exon 4 of 4)	7699.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	6.33793054990783	5.78119076913278	6.51565040871143	6.68495350655043	5.27711273066869	5.25160986741082	5.46442408482425	4.77839217245974	-1.91367400022312	6.30767366234696e-09	3.49396033939451e-07
Merged-chr5-96948979-3	chr5	96948877	96949077	+	896.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27705.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	4.45212770809677	4.42116067215219	4.66554009491978	4.53955338820774	3.83027539509539	3.73780416107569	4.22430023138136	4.14629016393474	-1.33357385698496	0.00181524384911092	0.0216754306216854
Merged-chr10-40310396-4	chr10	40310290	40310490	+	957.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-8202.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	4.9158975127305	5.07296763489628	5.20921628720061	5.16425385768671	4.97103596900548	4.89753283343296	4.99759759913856	4.8382903427616	-0.333014409907842	0.286418076959596	0.598066504135974
Merged-chr19-41777012-3	chr19	41776907	41777107	+	899.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027667, intron 9 of 11)	L1MB2|LINE|L1	25077.0	NM_001163495	71085.0	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	3.78953062979817	3.31347639594524	3.35317072334716	3.05672281946764	4.43771261633774	4.01998999984489	4.1398156712325	4.11677057532251	2.44007184596942	1.97357181338634e-06	6.4676274449828e-05
Merged-chr8-8462007-4	chr8	8461920	8462120	+	975.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	198753.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	5.09371937305223	4.95512803834155	4.83405177543677	5.19850433547961	5.10058061372106	5.48245840421144	5.33947303188228	5.21909154722389	0.451423695818439	0.148846136898273	0.430746673512948
Merged-chr2-45104025-2	chr2	45103925	45104125	+	918.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	(GA)n|Simple_repeat|Simple_repeat	6252.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	2.5142795789868	2.62629870071507	2.51461232621107	2.03950752610272	2.48270655642999	2.41444195233868	2.30375329061271	2.38082917104604	-0.259451433792457	0.746700737502373	0.90024329344347
Merged-chr19-5571995-4	chr19	5571872	5572072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033448)	TTS (NM_001033448)	3948.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	6.96103360559406	6.56428902865545	6.68186880835283	6.96364929770245	6.4411126906965	6.66522881553039	6.60228293032697	6.46585277525496	-0.387892998006219	0.0751875424977552	0.295972463634981
Merged-chr8-113664775-2	chr8	113664675	113664875	+	858.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11683.0	NR_136914	102631810.0	Mm.412563	NR_136914	ENSMUSG00000110582	Gm30052	-	predicted gene, 30052	ncRNA	2.60502678671687	2.85784670950254	2.45603996788206	2.79121321195796	2.88197205460372	2.8449249069331	2.85036217868987	2.80045523889833	0.699817742594051	0.295838434206588	0.607719593315749
Merged-chr10-19580940-3	chr10	19580827	19581027	+	650.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11022.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	3.63222102508232	3.39477515752877	3.01592852963419	3.09155767105099	3.26996298661727	3.5037460594137	3.20340021715263	3.21332223278018	0.00251099827648152	0.996532746166865	0.998649284589029
Merged-chr13-99939473-4	chr13	99939370	99939570	+	680.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LFSINE_Vert|SINE|tRNA	-38787.0	NM_001081493	27220.0	Mm.75498	NM_013732	ENSMUSG00000021647	Cartpt	Cart	CART prepropeptide	protein-coding	3.8040391404617	3.90323830115009	3.85438286987177	3.64977180779399	3.94823846632227	3.63883603251661	3.57089824052216	4.03344529578519	0.0584604111896303	0.901227800311235	0.963342914941175
Merged-chr7-145309071-4	chr7	145308949	145309149	+	812.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145379, exon 3 of 3)	3' UTR (NM_145379, exon 3 of 3)	-5786.0	NM_203490	211578.0	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	4.21936162987322	3.764566079174	3.86778882388726	3.78783572935852	4.05091303167812	3.70358864891907	3.9939369998012	3.76002292749846	-0.0595116075421843	0.897746528852118	0.961795032694124
Merged-chr8-40926197-4	chr8	40926083	40926283	+	872.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026840)	promoter-TSS (NM_026840)	-50.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	4.41522769544326	4.0714149062072	4.41593183205507	4.26750836242661	4.18454674781711	4.27087399406448	4.51098799226249	4.4531169504232	0.149296999017315	0.70309857337878	0.880561870614917
Merged-chr4-135438089-3	chr4	135437979	135438179	+	816.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CTG)n|Simple_repeat|Simple_repeat	-4274.0	NM_022980	53902.0	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	3.18615799682725	3.17466450248754	2.9316193527639	3.22535255447716	3.12555259204895	3.17452617011435	3.38457870964297	3.18491136577841	0.298086614601271	0.594539073519659	0.823449111030039
Merged-chr15-53216596-3	chr15	53216507	53216707	+	956.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	129576.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	3.61862777009831	3.97431869814796	4.23139498419608	4.05862970741732	3.63644234453817	3.9088482627879	3.7198037863932	3.67604654922102	-0.744152462620183	0.116377931021652	0.377466253427817
Merged-chr5-144358114-5	chr5	144358048	144358248	+	760.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025833)	promoter-TSS (NM_025833)	-36.0	NM_025833	66898.0	Mm.18814	NM_025833	ENSMUSG00000038859	Baiap2l1	1300006M19Rik|AI585895|IRTKS	BAI1-associated protein 2-like 1	protein-coding	3.54691762774248	3.56920533856526	3.39018374387624	3.37479350369011	3.04354661719924	3.25714568448502	3.32071226496002	3.4428349001636	-0.732348628717306	0.177198866552042	0.472449504292692
Merged-chr6-135947595-3	chr6	135947482	135947682	+	982.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008171, intron 4 of 14)	intron (NM_008171, intron 4 of 14)	225929.0	NM_008171	14812.0	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	3.02861175250106	2.94112646215224	3.11368699718574	2.42911209028098	4.30096942638098	4.31902910272187	4.23508138268427	4.32644635281312	7.15614534879663	3.17553808410633e-17	7.33868913274691e-15
Merged-chr3-88337528-3	chr3	88337473	88337673	+	914.6555789999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178246, intron 1 of 21)	intron (NM_178246, intron 1 of 21)	1313.0	NM_178246	229512.0	Mm.439830	NM_173188	ENSMUSG00000001415	Smg5	BC024683|mKIAA1089	Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	4.21203085570273	3.76370023215771	3.73127460707308	3.58179881776302	4.52525921754692	4.51225028555081	4.14811467184639	4.56034367855982	1.58940822999519	0.000287869847981066	0.00490667813923474
Merged-chr6-114893547-2	chr6	114893447	114893647	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	28274.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	4.87301517248745	4.47702872288529	4.12569615185978	4.08823184111737	4.16771473876857	4.30328630054894	4.15756419694606	4.17306548638549	-0.533211855002863	0.222968393754592	0.531069778572449
Merged-chr2-21117344-3	chr2	21117240	21117440	+	656.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88025.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	3.07543456264472	2.86074411426714	3.1836055876571	3.19175456941899	2.58138889140825	2.79177594064928	2.94757334561671	3.01675495693574	-1.096633045274	0.0961253903215348	0.33977653786591
Merged-chr5-62847634-2	chr5	62847526	62847726	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 6 of 8)	intron (NM_001170705, intron 6 of 8)	33803.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	2.79909945738801	2.89967377574313	2.86901052698488	2.92369047315677	3.12783826290666	3.33699630966756	2.98757472998088	3.11422739411505	1.0985295712172	0.0603747920352351	0.259538633476822
Merged-chr12-34783824-4	chr12	34783730	34783930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	133265.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	6.27237956993926	6.07648737758321	5.88903295853945	6.5646532282072	6.29092207616117	5.91021238344057	6.41222429234469	6.15344981468351	-0.0522470178255375	0.845805457390032	0.941578483422717
Merged-chr4-117127208-4	chr4	117127163	117127363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175030, intron 2 of 3)	intron (NM_175030, intron 2 of 3)	450.0	NM_175030	242646.0	Mm.358914	NM_175030	ENSMUSG00000047671	Tctex1d4	4833401D15Rik	Tctex1 domain containing 4	protein-coding	5.34083621753958	5.39447735977914	5.27983237236062	5.5180486056088	5.41068048691412	5.13823891273907	5.55975906763243	5.58408435417977	0.0678863880384908	0.813537512376081	0.927919022408735
Merged-chr7-110768614-4	chr7	110768575	110768775	+	809.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276301, intron 1 of 14)	CpG	469.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	3.97406639049439	3.57105283989973	4.28297974604865	3.72115396165447	3.70578760484542	4.28733870031328	4.05224159010201	4.24042506422587	0.476599316311877	0.328879706041982	0.640144325858488
Merged-chr10-119050493-4	chr10	119050387	119050587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152787)	promoter-TSS (NR_152787)	12.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	5.35762802042955	5.0570631592128	5.14731370576028	5.6363186690238	5.43765053742771	5.18556071101291	4.60963961776033	5.1105607101374	-0.372212557631001	0.29882432613533	0.61108445743634
Merged-chr16-5234154-1	chr16	5234054	5234254	+	1000.0	f0_balb.idr	intron (NM_145362, intron 1 of 12)	intron (NM_145362, intron 1 of 12)	533.0	NM_145362	208211.0	Mm.34581	NM_145362	ENSMUSG00000039427	Alg1	HMAT1|HMT1	asparagine-linked glycosylation 1 (beta-1,4-mannosyltransferase)	protein-coding	4.78689256797014	4.57408571344479	4.24670577298108	4.78275272465717	4.52106226182632	4.52286529488115	4.65950309962183	4.52194463751693	-0.155395645066498	0.676301498321098	0.867094121602346
Merged-chr9-106314856-1	chr9	106314756	106314956	+	778.0	f0_balb.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	33795.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	3.48693934241121	3.01921518664238	3.34615391111002	3.3823446240566	2.85225470836536	3.11552632364637	2.71037696189364	2.86669708682685	-1.8545476139457	0.00487549500161713	0.046681848092562
Merged-chr3-27209892-4	chr3	27209808	27210008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	26904.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	8.43715799164322	8.42871161719394	8.82500535016571	8.77356772730719	8.46735793228142	8.43075036886277	8.59631455269067	8.71208502474693	-0.0967765029382763	0.575699650454952	0.813185666420437
Merged-chr3-144381175-4	chr3	144381117	144381317	+	818.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175962.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	3.7105967534239	3.67915062906409	4.0629770023482	4.18327457696703	3.56721975354873	3.83093423506626	4.00038181098904	4.18558645937637	-0.0710661620725013	0.885650420037377	0.957046732876473
Merged-chr13-64161781-4	chr13	64161687	64161887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019986)	promoter-TSS (NM_019986)	-79.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	9.06253889220498	9.20186686048891	9.29886345487384	9.14652697008572	9.0805771136077	9.19968810281385	9.42125824019227	9.1512862166302	0.0474894001226346	0.752661298171723	0.902626829735826
Merged-chr16-91728738-4	chr16	91728620	91728820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133679)	promoter-TSS (NM_133679)	82.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	8.24689871682692	8.25280247675851	8.11411485161837	8.08291651600234	8.29134307121594	8.4485948742585	8.44524086996782	8.23119176485563	0.232795202432176	0.137435649062301	0.412347498929588
Merged-chr7-100465678-6	chr7	100465571	100465771	+	926.7037349999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 32 of 32)	intron (NM_001017985, intron 32 of 32)	-7320.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	3.72232128711681	3.44126642991675	3.57818615063952	3.66221622543671	3.15776124583061	3.40657973283908	3.51179084314351	3.35384645961984	-0.862865541755656	0.0985633647044078	0.344072669754539
Merged-chr6-7693184-3	chr6	7693049	7693249	+	973.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012055)	promoter-TSS (NM_012055)	33.0	NM_012055	27053.0	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	3.8439625972282	3.64259487086587	3.8880010510816	3.92010562767079	3.26089063114149	3.34733394350072	3.22402370063949	3.54486544853925	-1.65201920057664	0.00174603109996607	0.0210502621382935
Merged-chr2-23005836-4	chr2	23005720	23005920	+	831.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	MLTR25A|LTR|ERVK	34421.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	4.79571917843314	4.69129160777365	5.22263155788557	5.10582622533862	4.8443845781749	4.85158713595162	5.08095694516127	4.79335638020017	-0.163650330477483	0.630467663230983	0.842870865234181
Merged-chr5-5749349-4	chr5	5749236	5749436	+	984.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027399)	promoter-TSS (NM_027399)	-19.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	5.66058681606568	5.69764120849572	5.94480174127586	5.82789211374533	5.26175570257493	5.18738142084422	5.42158558337671	5.07991378126555	-0.94490964065378	0.00074513052876768	0.0106402489133975
Merged-chr16-65128041-4	chr16	65127952	65128152	+	872.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-22268.0	NM_008310	15557.0	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding	4.36893007380462	4.31858753255608	4.50610741028138	4.74383430783087	5.06170033968601	4.68068416539272	4.68343709170688	4.5867916949497	0.565889939022248	0.136706331985965	0.411181914406465
Merged-chr13-97486036-4	chr13	97485868	97486068	+	769.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110430, intron 2 of 2)	intron (NR_110430, intron 2 of 2)	3267.0	NR_110431	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	3.38063997978511	3.10576412445523	3.48353220496251	3.28088042115415	3.16905411637875	3.32208196024694	3.31364489040769	3.20861786192462	-0.234917848345036	0.663589349124977	0.860639668404336
Merged-chr5-24423711-4	chr5	24423596	24423796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007668)	promoter-TSS (NM_007668)	-166.0	NM_007668	12568.0	Mm.298798	NM_007668	ENSMUSG00000028969	Cdk5	AW048668|Crk6	cyclin-dependent kinase 5	protein-coding	8.65868270223633	8.78788333397407	8.68635650595983	8.64550096383599	8.66861271577415	8.71690103562993	8.69771330158537	8.57218181953091	-0.0375826721147488	0.792559882998832	0.919627897475503
Merged-chr7-98117352-2	chr7	98117252	98117452	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 2 of 48)	intron (NM_008663, intron 2 of 48)	2141.0	NM_001256081	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	2.28011974106289	2.28249709705306	2.20267255394134	2.06761499514317	2.30539429196923	2.78311737258319	2.54271287217292	2.55192016549903	2.09235751806823	0.00550781910410317	0.0510138003917969
Merged-chr7-81863371-4	chr7	81863251	81863451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291282, intron 2 of 9)	intron (NM_001291282, intron 2 of 9)	664.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	6.15921061423958	5.56115804777964	5.90777838474911	6.28627619324061	5.9152916060938	5.82965542040551	5.87764698015007	6.39748740058044	0.0105672627604339	0.971068499917429	0.989599155239055
Merged-chr19-4048070-3	chr19	4047986	4048186	+	831.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5865.0	NM_181796	14869.0	Mm.441542	NM_181796	ENSMUSG00000038155	Gstp2	GSTpiA|Gst-3|Gst3	glutathione S-transferase, pi 2	protein-coding	3.47508211327979	3.49958994965796	3.41675890840154	3.41983068624994	3.48441963701201	3.75527401061852	3.76492928056973	3.68585774218571	0.714790223441152	0.136934606284522	0.411508257743677
Merged-chr9-62913697-7	chr9	62913612	62913812	+	976.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 6 of 13)	MIRc|SINE|MIR	-51688.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	4.86499979495904	4.61677577556931	4.72645429081013	4.82600730169901	4.47502127036627	4.42138260667955	4.6288856043774	4.68597890021047	-0.456580646661899	0.191761930824319	0.491174881537907
Merged-chr4-11123772-4	chr4	11123681	11123881	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151526)	promoter-TSS (NR_151526)	-177.0	NR_151526	100503518.0	Mm.102270	NR_151526	ENSMUSG00000086765	Gm11827	-	predicted gene 11827	ncRNA	5.90750163815371	5.17202064552377	6.04880625721657	6.18039568068232	5.21507584982979	5.17255030290181	5.8352061974444	5.74645370933428	-0.599931025266564	0.0867071569745253	0.321209032577518
Merged-chr9-66877575-4	chr9	66877473	66877673	+	922.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	42132.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	4.32205778751978	4.82337210166895	4.8334071238589	5.42341323664131	4.6102827797523	4.69397754506443	4.19763905106205	4.83012435077631	-0.671507650688772	0.122902087797763	0.388594869729789
Merged-chr4-132630092-2	chr4	132629995	132630195	+	731.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-8951.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	3.00194972100957	3.0547274695732	3.06321444738647	2.71405391345193	2.9413076822498	3.23433770167204	2.86250354055329	3.2284244129335	0.482052196761267	0.429551349271477	0.72042967695086
Merged-chr3-16025247-4	chr3	16025202	16025402	+	927.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-18970.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	4.29957212775556	3.99939344374118	3.99316469907587	3.44844488917594	4.09991982996191	4.30499446195578	3.97592138405481	3.94031084448806	0.337658038603141	0.486804481708341	0.7603696580653
Merged-chr9-20966950-4	chr9	20966855	20967055	+	908.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010333, exon 2 of 2)	3' UTR (NM_010333, exon 2 of 2)	-7067.0	NM_001199432	13433.0	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	4.39384318989513	4.35950444961152	4.04744187683354	4.37889176625692	4.35720773816068	4.76509245248776	4.64529965864439	4.47593760304207	0.579427459368432	0.132056452610937	0.404564269621841
Merged-chr11-69058434-4	chr11	69058230	69058430	+	962.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1445.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	3.20383915864307	3.28206598707342	3.31613108236713	2.9539998897606	3.34727537178521	3.31646682617508	3.07156037849109	3.08038491717249	0.102493329390169	0.857250497463058	0.946239174364937
Merged-chr7-138919744-4	chr7	138919646	138919846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10240.0	NM_009760	12176.0	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding	6.93466648552637	6.91812765274374	6.87158512257336	6.9461194578399	6.63366802210583	6.53595221523067	6.68312941793311	6.72736530538697	-0.386534079691101	0.0469624346290611	0.222844310631453
Merged-chr15-89067890-2	chr15	89067790	89067990	+	852.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001002005, exon 2 of 3)	exon (NM_001002005, exon 2 of 3)	7964.0	NR_040417	69120.0	Mm.276391	NR_040417	ENSMUSG00000087331	1810021B22Rik	-	RIKEN cDNA 1810021B22 gene	ncRNA	2.79021093871904	3.08418730212804	3.04656442989503	2.88121519496588	3.08663771434253	3.0324934022794	2.97652402801281	3.04496535859643	0.35597517158384	0.541602977946336	0.793339055934698
Merged-chr8-35549274-3	chr8	35549169	35549369	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-38529.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	4.66994096244983	4.75076588471923	4.8490894832725	4.77395399708606	3.15758377823774	3.41153051272492	3.35562506790141	3.44428131656299	-6.13858835796614	4.13206867782376e-10	2.84996624436838e-08
Merged-chr2-153791605-4	chr2	153791512	153791712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036629, intron 5 of 7)	intron (NR_036629, intron 5 of 7)	10733.0	NR_036629	100504221.0	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	6.1879125465246	6.51743361495089	6.32092671433016	6.5407994896554	6.09445502127041	5.67825366528736	6.25240837192592	6.22367156780313	-0.492376301252804	0.0486622967350495	0.227827797062439
Merged-chr13-9846974-4	chr13	9846870	9847070	+	850.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81649.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	4.01370721162767	3.66734556814649	4.42900379617657	3.84827863545003	4.18358453022343	3.98063478462434	4.09058281127465	4.10630047158475	0.223320995620247	0.625438991030423	0.839932869373882
Merged-chr11-97151648-4	chr11	97151499	97151699	+	840.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1887.0	NM_198100	73174.0	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	3.84563889056724	3.60361247361017	4.0296283185398	3.47171834571921	3.76887793793387	3.86395135690784	3.92362803668123	3.79369476215628	0.285296820494225	0.549373941817925	0.79798967011526
Merged-chr11-32286981-4	chr11	32286844	32287044	+	706.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033981)	promoter-TSS (NM_001033981)	-20.0	NM_001033981	544763.0	Mm.450958	NM_001033981	ENSMUSG00000073063	Hbq1b	F830116E18Rik|Hbqt1	hemoglobin, theta 1B	protein-coding	3.24153946036397	3.4818406833056	3.17578322198277	3.04751289881262	3.76305978778228	3.64859416340395	3.46371885848902	3.47595779288781	1.24058798859705	0.0185702464073064	0.121874942433843
Merged-chr15-64197992-4	chr15	64197879	64198079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 4 of 28)	intron (NM_001276461, intron 4 of 28)	114694.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	7.10982638133034	7.48282872325197	7.69040743206898	7.71957638898942	7.37812737877736	7.14652180278772	7.23583071105504	7.0302039951558	-0.430478388068709	0.0414962897754113	0.206313557081704
Merged-chr3-105836207-3	chr3	105836097	105836297	+	839.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20630.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	3.92657783003673	3.73130896160727	3.77298589191853	4.16122136917882	3.92020604320067	3.77669775727779	4.00282055516173	3.97228053797793	-0.0131367396208731	0.976984920375225	0.991824880157859
Merged-chr5-3647985-4	chr5	3647869	3648069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026033)	promoter-TSS (NM_026033)	-33.0	NM_026033	67210.0	Mm.178424	NM_026033	ENSMUSG00000007415	Gatad1	2310031E19Rik|2810047M21Rik|8430439A17Rik|9130430G15Rik|B330017N08Rik|Odag	GATA zinc finger domain containing 1	protein-coding	7.47995443135386	7.43971251130261	7.97723294474455	7.58394018289015	7.59695521484405	7.54949635824951	7.63724253581759	7.28090772877033	-0.144989814527584	0.470090195034908	0.748893240653306
Merged-chr2-148752067-3	chr2	148751975	148752175	+	601.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177655, intron 2 of 3)	intron (NM_177655, intron 2 of 3)	1714.0	NM_177655	228756.0	Mm.189390	NM_177655	ENSMUSG00000055177	Cstl1	RCET1|RCET2|RCET3	cystatin-like 1	protein-coding	3.35583526791417	3.13218689814456	2.98646316122408	3.08877229654467	3.27169001025782	3.35721045179993	3.39446869810804	3.40687199818709	0.789282081730999	0.142060160762873	0.419415993319531
Merged-chr1-92974313-4	chr1	92974184	92974384	+	883.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001104529, intron 1 of 1)	intron (NM_001104529, intron 1 of 1)	-1063.0	NM_001271766	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	3.71522294861251	3.95356235191005	4.12426393832687	3.83230211099963	4.09121378288091	4.20402868099647	4.01606660365394	4.03112148306631	0.479505660009346	0.25973891782518	0.571563806638815
Merged-chr5-121596346-4	chr5	121596241	121596441	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2517.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	4.76280150151221	5.3794330365526	4.84161651211072	4.80192845780232	4.85027862823939	5.01643086821606	4.92655322682124	4.91190463013004	-0.0917238758927786	0.790513970427795	0.918840742585233
Merged-chr17-63374386-4	chr17	63374298	63374498	+	953.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 5 of 8)	MTA_Mm|LTR|ERVL-MaLR	-61425.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	4.53646309948797	4.83927637875314	4.57863421889664	4.3369926184532	5.05492712305465	4.8300643734194	4.47395415022681	4.14586343207619	0.21916742425624	0.600782129685639	0.826967246454786
Merged-chr8-111056796-1	chr8	111056696	111056896	+	1000.0	f1_balb.idr	exon (NM_028274, exon 1 of 1)	exon (NM_028274, exon 1 of 1)	457.0	NM_028274	72544.0	Mm.24174	NM_028274	ENSMUSG00000109941	Exosc6	2610510N21Rik|C76919|Mtr3	exosome component 6	protein-coding	4.24924363826918	3.91389579044676	3.93621990942097	4.04244801433217	3.81237611058752	4.10933394211726	3.70200275802749	4.20688836695758	-0.195196132507358	0.663753186032891	0.860726690264805
Merged-chr2-68793747-4	chr2	68793656	68793856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67685.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	5.91286131852963	6.57890226152166	5.60868502995786	5.6920807725413	5.80292458412934	6.25728565783133	5.66318087375695	5.60472879005705	-0.242578556185874	0.462827736346989	0.744303460053824
Merged-chr2-30178513-4	chr2	30178417	30178617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172660)	promoter-TSS (NM_172660)	-58.0	NM_172660	227695.0	Mm.4449	NM_172660	ENSMUSG00000039660	Spout1	9930028P05|AL033358|CENP-32|D2Wsu81e	SPOUT domain containing methyltransferase 1	protein-coding	7.69479477046877	7.79346145212033	7.20942432899904	7.16231352237588	7.50494331034108	7.56076696004353	7.64260138908207	7.37824662634057	0.0466502988520124	0.829070867614266	0.934339035645423
Merged-chr6-117936084-4	chr6	117936008	117936208	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033648, intron 2 of 8)	intron (NM_033648, intron 2 of 8)	1227.0	NM_001173372	108017.0	Mm.250392	NM_033648	ENSMUSG00000004988	Fxyd4	0610008I02Rik|AI267073|Chif	FXYD domain-containing ion transport regulator 4	protein-coding	4.22029714916679	4.32576576857949	4.30602396505643	4.48135048496576	3.55628996183013	3.8067060780361	4.20186310959751	4.26146639235592	-0.931395452892953	0.0451398680017993	0.2172808169048
Merged-chr6-40423923-3	chr6	40423821	40424021	+	897.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356375, intron 1 of 8)	intron (NM_001356375, intron 1 of 8)	12214.0	NM_001356375	243780.0	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	3.1122593989158	3.29125958827963	3.11263593555928	3.20648990562877	3.52760229848334	3.02461899214778	3.04084428951357	2.91666118822045	-0.0782800734352119	0.898002990121704	0.961940146282087
Merged-chr3-108132715-4	chr3	108132591	108132791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010306, intron 1 of 8)	intron (NM_010306, intron 1 of 8)	13461.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	5.08432795775328	5.10805861985646	4.98014586448404	5.4244539209546	5.07627082842247	4.96295200855518	5.02674508507114	5.40556728675563	-0.0958627754653438	0.767558405940844	0.909027746453384
Merged-chr17-5566251-4	chr17	5566149	5566349	+	960.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	MTE2a|LTR|ERVL-MaLR	73649.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	4.81508911356712	4.53572359396016	5.0502379941488	5.15921454916287	4.70027450375923	4.75104230103232	4.7930119469736	4.73699372051404	-0.372772973719906	0.292491046079169	0.604823083169751
Merged-chr10-61199765-4	chr10	61199651	61199851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081127, intron 21 of 21)	intron (NM_001081127, intron 21 of 21)	24489.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	6.16945207332438	6.6160975173818	6.59169283391458	6.51197081240899	6.64548511817303	6.7359614547314	6.7040602630008	6.27025880146774	0.166572782703738	0.471190042519088	0.749734937523649
Merged-chr15-81730050-4	chr15	81729965	81730165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146174)	promoter-TSS (NM_001146174)	-146.0	NM_001358622	19387.0	Mm.270975	NM_011241	ENSMUSG00000022391	Rangap1	C79654|Fug1|mKIAA1835	RAN GTPase activating protein 1	protein-coding	8.52770434022557	8.53279280184594	8.07761498190057	8.45479705271889	8.25679631788562	8.30141359490045	8.32527770564537	8.22375957286892	-0.174275749264563	0.30035126932106	0.612422387893833
Merged-chr4-7154448-4	chr4	7154350	7154550	+	866.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-163727.0	NM_145711	252838.0	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	4.44232812121224	3.83656522632952	4.914248065927	5.07509945222015	4.37678707816126	4.33263412046797	4.50676647034564	4.60444417585359	-0.439209670332208	0.355820124626831	0.662522775212232
Merged-chr16-87703843-2	chr16	87703743	87703943	+	939.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	4889.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	3.11157680836953	3.24825098657531	3.28088397058656	3.06345257099502	3.28643011998462	3.02425307841844	3.04042111990146	3.1692273849512	-0.126463452323879	0.822711331743765	0.932185203682946
Merged-chr12-99468215-4	chr12	99468119	99468319	+	826.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18145.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	4.05246465031031	4.37568931447486	4.44338273009854	4.70644718153345	4.02674072436363	4.07136121957872	3.6955848597599	4.05068132517154	-1.17073604999692	0.00903572003096277	0.0733523626920505
Merged-chr16-24933457-2	chr16	24933360	24933560	+	919.833374	f0_balb.idr|f0_c57.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-126179.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	4.09440671971485	3.97786658460013	3.99458964454923	4.29091744958531	4.48169080077502	4.21918368804924	4.213422307037	4.0434275197193	0.371120237860597	0.377508471501858	0.680184166384781
Merged-chr12-3355246-4	chr12	3355110	3355310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-9922.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	6.05284844859864	6.40568911633978	5.84289350085869	5.83045131978763	6.36770215331186	6.25130779949581	6.22126539207953	6.15316335181708	0.317678662348652	0.211021058347293	0.515716175112166
Merged-chr10-69217352-4	chr10	69217267	69217467	+	883.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	4173.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	3.78109329121629	3.90588255543111	4.01175094158979	4.45544834498901	4.23010407770349	4.23984808517374	4.18925434493958	4.75040445893376	0.698149062757302	0.140578888202769	0.417014573177116
Merged-chr7-16207238-3	chr7	16207052	16207252	+	996.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027883, intron 7 of 16)	intron (NM_027883, intron 7 of 16)	14841.0	NM_001285931	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	3.68456822888964	3.50121201558252	3.61909192799951	3.88448127864366	4.48551786934785	4.5458007325663	4.23549434929442	4.51732788877978	1.94138371369277	3.47773070214554e-05	0.000822943462925589
Merged-chr11-69995068-4	chr11	69994963	69995163	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291125)	promoter-TSS (NM_001291125)	-703.0	NM_001291125	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	4.82930463202544	4.7148740898712	4.39663135862117	4.85122252626804	5.22726512585828	5.00337414976296	4.73188576040737	4.99877204496091	0.579529095398052	0.0976674585874541	0.342493463803185
Merged-chr19-47169159-4	chr19	47169069	47169269	+	877.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9651.0	NM_021360	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	3.92553472203072	4.42841025448475	3.97657346022511	3.51646507305307	4.2130945183598	4.1011828904607	3.62741113281896	4.06942727104196	0.0584110315044482	0.90899760499598	0.966156082397695
Merged-chr3-7613799-4	chr3	7613721	7613921	+	870.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008371)	promoter-TSS (NM_008371)	-61.0	NM_001313888	16196.0	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	3.71622550401641	3.99776309846228	3.65438578547637	3.69788611299753	4.12110863391514	4.16598155378603	4.11352545899444	4.57402063435141	1.28268598603099	0.00361543336326695	0.0369798723040636
Merged-chr15-5133353-2	chr15	5133253	5133453	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-10508.0	NM_001013367	105787.0	Mm.207004	NM_001013367	ENSMUSG00000050697	Prkaa1	AI194361|AI450832|AL024255|AMPKalpha1|C130083N04Rik	protein kinase, AMP-activated, alpha 1 catalytic subunit	protein-coding	2.99145747209724	3.0183599827395	3.12129751500348	2.98492462331263	3.30020533616787	3.51395238854185	3.11011539026626	3.29252536053885	1.08870830689568	0.0476730963473459	0.225188007066662
Merged-chr2-60217813-3	chr2	60217707	60217907	+	954.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020575, intron 1 of 9)	intron (NM_020575, intron 1 of 9)	7871.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	4.25199208515876	4.18905431234047	4.29549117233471	4.56751122317429	3.86816988718759	4.28809499549016	4.09727091140193	4.01166893204688	-0.717628597707679	0.0887895438084799	0.325166734316159
Merged-chr5-105698843-4	chr5	105698791	105698991	+	992.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1078.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	5.69671563750361	5.40547268715649	5.33689527064121	5.90337259801693	4.81535572361885	4.97301050678214	5.50207702101912	4.99407328304911	-0.946726731956729	0.00490670747251816	0.0468986882216154
Merged-chr6-114643144-4	chr6	114643048	114643248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028835)	promoter-TSS (NM_028835)	51.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	5.64118831112877	6.01124543938437	5.5591722054014	5.75055536553657	5.85636366455824	5.79112181621783	5.74026541942893	5.76542576034889	0.0569471343841921	0.826482007513665	0.933457528269434
Merged-chr2-35496106-4	chr2	35496003	35496203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34654.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	6.33141422459478	5.96541130070714	6.20494761536795	6.34098415495985	6.122260890005	6.12692414559218	6.05298588491323	6.16147785667928	-0.167912546334191	0.473789704380431	0.751365889135324
Merged-chr13-5605606-4	chr13	5605536	5605736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	252456.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	5.68737627812569	5.97853792485628	6.05797619633719	6.29961797432395	6.2162395085043	5.27334932218935	5.83357047904492	5.68435180212825	-0.355010781808446	0.257153794457999	0.568869652403216
Merged-chr7-19093269-4	chr7	19093156	19093356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126095, exon 15 of 15)	non-coding (NR_126095, exon 15 of 15)	-1288.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	4.92373047874216	5.6786618914274	5.00427772703839	4.99256615825561	5.43892449086706	5.68331602647021	5.48249733428461	5.5323919834447	0.613842714614784	0.0598078779249205	0.257925776602115
Merged-chr4-44166860-3	chr4	44166763	44166963	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038993, intron 1 of 11)	intron (NM_001038993, intron 1 of 11)	675.0	NM_175201	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	3.99020126243089	4.22238001500321	3.78638381131711	3.73043027780522	3.74346269350465	4.11433656877716	3.82499805900994	4.03470917602263	-0.0247924421624637	0.957084880961696	0.984757116793997
Merged-chr5-43180239-1	chr5	43180139	43180339	+	914.0	f0_balb.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-53224.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	3.68996662259272	3.45661905035834	3.64068203252159	3.76350028609215	3.48706361954211	3.2651160155069	3.81169108524774	3.41772545641274	-0.43286528329317	0.404117712002032	0.701304237921607
Merged-chr16-17451950-4	chr16	17451860	17452060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277231)	promoter-TSS (NM_001277231)	-25.0	NM_001277231	12929.0	Mm.21048	NM_007764	ENSMUSG00000006134	Crkl	1110025F07Rik|AA589403|AI325100|Crkol	v-crk avian sarcoma virus CT10 oncogene homolog-like	protein-coding	7.64619849196742	7.58698395008777	7.48459377211913	7.68456197891912	7.73453136724071	7.84148393997843	7.89656194440185	7.66753027320568	0.234131914075934	0.1647265196863	0.454956779653457
Merged-chr6-32507033-3	chr6	32506922	32507122	+	712.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 2 of 31)	intron (NM_175750, intron 2 of 31)	-4119.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	3.45404818338657	3.40808885649663	3.50515756694578	3.64300897834142	2.96047235475448	3.40342478199334	2.87498969866967	3.22784741504831	-1.46203187084022	0.0151698486028656	0.105725511965473
Merged-chr11-70945467-4	chr11	70945355	70945555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083331, intron 10 of 16)	intron (NM_001083331, intron 10 of 16)	24518.0	NM_172394	19069.0	Mm.288962	NM_172394	ENSMUSG00000040667	Nup88	Nup84|Prei2	nucleoporin 88	protein-coding	5.30239165953657	5.47239461761682	5.53024108695653	5.85392388134711	5.00558282187125	5.24425294957352	5.44964295655908	5.23601725409367	-0.603552422443785	0.0505279141232827	0.233168183715658
Merged-chr17-50330412-4	chr17	50330310	50330510	+	903.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36790.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	5.39173847968436	5.30245473102217	5.5201932774956	5.7351648924679	4.67057444941665	4.83493555669362	4.53118953076108	5.18553951496146	-1.30147918155752	0.000126643254460249	0.00247374868529803
Merged-chr7-127763793-3	chr7	127763696	127763896	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172748, intron 9 of 10)	intron (NM_172748, intron 9 of 10)	-6019.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	3.31748386747722	3.56968300525019	3.38233780333301	3.7925545298758	3.64894452410201	3.49609072768328	3.83528669950629	3.75995716571909	0.449414356817049	0.388103414787457	0.688846544177653
Merged-chr10-127261917-4	chr10	127261819	127262019	+	824.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039000, intron 1 of 28)	MIRb|SINE|MIR	1444.0	NM_008447	16572.0	Mm.30355	NM_008447	ENSMUSG00000074657	Kif5a	D10Bwg0738e|Khc|Kif5|Kns|mKIAA4086	kinesin family member 5A	protein-coding	3.90936365479675	3.84816170700847	3.95927926787156	4.24437256007767	4.21075581012365	3.74810926558529	3.67803642539528	4.05011958671131	-0.16469425958882	0.727602019608213	0.891575922190683
Merged-chr8-106683115-4	chr8	106683012	106683212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173037)	promoter-TSS (NM_173037)	44.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	6.97771765345845	6.95923008715936	6.66804341826255	6.56405037336314	7.27928081615712	7.16777247525048	6.98048349698263	6.79979568903121	0.390739700030422	0.076513410928211	0.298861223533948
Merged-chr8-116732954-10	chr8	116732764	116732964	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029441, exon 1 of 7)	5' UTR (NM_029441, exon 1 of 7)	127.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	5.4349192438191	4.91096971336867	5.67413719669301	4.93171116992414	5.69730514667069	5.84762486196114	5.75946223394442	5.5955955033201	0.809705692094887	0.0107558169647752	0.0832769959159245
Merged-chr14-61687026-2	chr14	61686926	61687126	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4653.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	2.93944844426412	3.31945852755754	3.07518440870532	2.89943748043881	3.4200207768008	3.24990683064071	3.24275729673508	3.36125441846358	0.994510755582373	0.077495955111357	0.301095102035797
Merged-chr14-45085358-4	chr14	45085263	45085463	+	842.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97252.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	4.01750328452208	4.21302265988651	4.36863425884468	4.29397349691344	3.88615212651526	4.14159412346252	4.14276961221251	3.91101137872946	-0.558990661889282	0.182218891378414	0.47878218634963
Merged-chr17-36061001-3	chr17	36060903	36061103	+	795.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2632.0	NM_001199967	100529082.0	Mm.484641	NM_001199967	ENSMUSG00000079492	Gm11127	-	predicted gene 11127	protein-coding	3.19625971189326	3.43063375530297	3.75984130550577	3.61573646445529	3.40066617052368	3.67971827591039	3.49472884606928	3.66296165283293	0.126036124159217	0.809726552822221	0.926644407837403
Merged-chr4-46344529-4	chr4	46344531	46344731	+	843.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183298, exon 1 of 1)	exon (NM_183298, exon 1 of 1)	437.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	3.24325492509203	3.41772690101118	3.3023151954105	3.3897253147858	3.26476536957019	3.29216511898195	3.39855725527838	3.30061701641989	-0.114590902780267	0.82536764747251	0.933084142489847
Merged-chr8-111525355-4	chr8	111525265	111525465	+	984.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-3258.0	NM_176923	319481.0	Mm.247294	NM_176923	ENSMUSG00000031959	Wdr59	5430401O09Rik|Cdw12	WD repeat domain 59	protein-coding	4.77384115939607	4.77144667968608	4.73357430993866	4.70167292413472	4.94839346021588	5.13635880587762	5.39693475339965	5.21122303837241	0.852205478710139	0.0075513041569243	0.0644323038342981
Merged-chr6-97504946-4	chr6	97504865	97505065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-17145.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	5.55862972067019	5.16236481402467	5.74265518189779	5.7809027588376	5.95169312662615	5.55778851428684	5.78397803110066	6.05879534469015	0.433971446391686	0.138177290960156	0.413568902517326
Merged-chr4-43260380-3	chr4	43260292	43260492	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081413, intron 37 of 39)	intron (NM_001081413, intron 37 of 39)	-6767.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	4.50132377741956	4.7168323443031	4.70867463995681	5.21240457323503	3.30675529014428	3.46073004798474	3.4816203975997	3.56673114037036	-4.65934472526864	1.51698631503747e-11	1.33033872614e-09
Merged-chr19-41382864-4	chr19	41382757	41382957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 1 of 16)	intron (NM_031376, intron 1 of 16)	2213.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	6.71561539766593	7.73146230824484	7.3015391767063	6.67667635884509	7.3230783371965	7.17678290531484	6.95117570968049	6.43002943521031	-0.227262665176283	0.454374828257585	0.738232045207638
Merged-chr2-137942891-3	chr2	137942766	137942966	+	771.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-313718.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	3.26130806982292	3.66500759216609	3.37804979949181	3.83190152792935	3.11046522775785	3.31123985347031	3.12437633118974	3.13273373967302	-1.47170212133727	0.011123787578732	0.0851042899410026
Merged-chr17-24193121-2	chr17	24193025	24193225	+	762.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001163851, intron 1 of 8)	intron (NM_001163851, intron 1 of 8)	6832.0	NM_001163852	224617.0	Mm.301585	NM_173186	ENSMUSG00000036473	Tbc1d24	9630033P11|C530046L02Rik|mKIAA1171	TBC1 domain family, member 24	protein-coding	3.33003333167464	3.16201054151137	3.17585063972901	3.45706608998324	4.22039242169048	4.46214804314393	4.03881756035018	4.13921723794884	2.7525957143542	2.68981458766391e-06	8.56253633878933e-05
Merged-chr7-128379023-4	chr7	128378922	128379122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 4 of 4)	MLT1C|LTR|ERVL-MaLR	39150.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	5.93748507606425	6.24219451490245	6.17808688451805	6.34893231390416	6.07524665575907	6.13949578149642	6.34667461551019	6.30532419861624	0.0262158589353339	0.912345287911326	0.967207481621882
Merged-chr10-63243747-4	chr10	63243645	63243845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026101)	promoter-TSS (NM_026101)	-52.0	NM_030114	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	8.56318991888122	8.62417872565735	9.0006500490745	8.59564967487873	8.60923439265694	8.64777620037184	8.76768849692004	8.67335712840928	-0.0380075389471126	0.817843182699423	0.930043134927182
Merged-chr14-10535033-3	chr14	10534934	10535134	+	728.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	RMER10A|LTR|ERVL	-81576.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	4.09484851803169	4.27481517423865	3.88320179994669	4.36994579367898	3.93709869983783	4.71142385385247	4.12543655112922	3.93731578178077	0.0899745157981482	0.847603253238861	0.942341845310106
Merged-chr2-91138758-4	chr2	91138675	91138875	+	863.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177719, intron 33 of 34)	intron (NM_001177719, intron 33 of 34)	20631.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	4.17445842677816	4.0082080214126	4.17508437681373	4.15405239376074	4.17334548276625	4.25281986379466	4.32949138047638	4.46319450274028	0.433127372998801	0.269577393288088	0.581250735394791
Merged-chr4-155200986-4	chr4	155200904	155201104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	21531.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	7.64187084006715	7.85769828633888	7.31826647986455	7.45775201485668	7.5829137856585	7.58014170120597	7.7408092340327	7.67930815492025	0.0832654610441248	0.661382906867746	0.859384613734741
Merged-chr18-23884669-4	chr18	23884543	23884743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 7 of 7)	intron (NM_001162941, intron 7 of 7)	-70045.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	9.15205180946081	9.04121230340099	9.54175726773481	9.19560216632846	9.07296339443984	9.1521020584913	9.35950672769314	9.0372137066945	-0.104056533776178	0.539675726204996	0.792391982250617
Merged-chr2-156722386-4	chr2	156722273	156722473	+	900.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042487, intron 1 of 6)	intron (NM_001042487, intron 1 of 6)	1094.0	NM_001042487	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	4.49854949169561	4.93298295626671	4.13484518731854	4.30518480471485	4.11681643563405	4.31422073240402	4.35450766754436	4.49632733617372	-0.417326537046214	0.325481206435515	0.63706282772022
Merged-chr12-100684714-4	chr12	100684599	100684799	+	919.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153587, intron 1 of 17)	L1MB2|LINE|L1	40421.0	NM_001330702	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	4.2178079675237	4.4426729778944	3.97683037784605	4.0787946316517	3.89322742987277	4.58911222685228	3.8513119216272	4.07646933023035	-0.147439682713172	0.748492264606278	0.900999421474581
Merged-chr2-170209378-4	chr2	170209279	170209479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66704.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	5.89461859741398	5.80380752737284	6.28034076454657	6.242485682687	5.77781226534387	6.11799922724642	6.15825257665492	5.89146308514086	-0.14475914359679	0.582212403526172	0.816501953640427
Merged-chr16-30788367-3	chr16	30788284	30788484	+	894.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	188661.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	3.46236591892	3.57326289411665	3.51893937771553	3.71848167680198	3.47292103709089	3.45544760287809	3.75080997865658	3.40247271945765	-0.178775609242634	0.721280667940206	0.888753092785481
Merged-chr7-114439924-3	chr7	114439817	114440017	+	793.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 1 of 15)	intron (NM_011055, intron 1 of 15)	24663.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	3.33150348581898	3.43149403290445	3.45211694784476	3.61430552791839	3.89582518354397	3.56636061336925	3.4393749862991	3.50643437698482	0.489483037116862	0.342006052399308	0.650969323021991
Merged-chr19-21653070-4	chr19	21652988	21653188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025423)	promoter-TSS (NM_025423)	-221.0	NM_146096	226016.0	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	8.86936559337814	9.00618143609843	9.13457426541276	9.17644797252533	9.00488197176689	8.97174564036267	9.09752534187009	8.72873646635312	-0.119721255779271	0.4504690612321	0.735338736614162
Merged-chr5-20951138-7	chr5	20951082	20951282	+	997.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030699, exon 1 of 1)	non-coding (NR_030699, exon 1 of 1)	193.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	4.46202575006038	4.9355661772567	4.41687437956872	4.70869952874247	5.01487907037993	4.68169967125835	4.48747516897205	4.85023022312592	0.270026390298367	0.471869424027868	0.75015310499252
Merged-chr4-107179352-1	chr4	107179252	107179452	+	681.0	f0_balb.idr	promoter-TSS (NM_025617)	promoter-TSS (NM_025617)	722.0	NM_029565	56374.0	Mm.291192	NM_029565	ENSMUSG00000028618	Tmem59	1110001M20Rik|3110046P06Rik|AI256529|D4Ertd20e|MTDCF1|ORF18	transmembrane protein 59	protein-coding	4.3074471723673	3.81651461316277	3.71481710107373	3.81600762123278	3.69962051613524	4.00048608578213	3.81033293077563	4.1088272074748	-0.0530988173189654	0.910357218249382	0.966671146059764
Merged-chr1-131199392-4	chr1	131199277	131199477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018750, intron 2 of 5)	intron (NM_018750, intron 2 of 5)	808.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	6.13916225274806	6.08836893278191	6.01498319330597	6.27322788616654	6.04196142835598	6.00349541546688	6.20394659817743	5.9885777065798	-0.127150193969109	0.587799913739038	0.819357070175615
Merged-chr1-173401616-4	chr1	173401506	173401706	+	734.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18998.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	4.57121582971295	4.47851357213246	4.53220132569321	4.55254129670741	4.60783474364188	4.62152188742832	4.38551070926137	4.4022268998591	-0.0490231608010816	0.891038183309314	0.959254414522706
Merged-chr5-115119283-4	chr5	115119152	115119352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007383)	promoter-TSS (NM_007383)	94.0	NM_007383	11409.0	Mm.18759	NM_007383	ENSMUSG00000029545	Acads	AI196007|Bcd-1|Bcd1|Hdlq8|SCAD	acyl-Coenzyme A dehydrogenase, short chain	protein-coding	6.02907951205402	6.10278930254934	6.45502879141519	6.00108250052694	6.13171177589761	6.01913510410892	5.90880091370403	6.43465785489576	-0.0165800525093116	0.94850722358344	0.981468586232336
Merged-chr8-103577363-4	chr8	103577285	103577485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26414.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	7.97543240370446	7.75753303017644	8.62505509188565	8.5123027654232	7.6569600224863	7.92398035400577	8.0838498096391	8.30257060157662	-0.332558777143179	0.166747957999518	0.45810154395954
Merged-chr3-84674905-3	chr3	84674802	84675002	+	972.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177260, intron 1 of 6)	U8|snRNA|snRNA	8710.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	4.41297287890417	4.40455543723815	4.64418062146335	4.406251304293	4.03056211659495	4.25904229818225	4.30728055805418	4.64103426416738	-0.344600986131809	0.389166586801242	0.689409867643743
Merged-chr13-12412247-4	chr13	12412165	12412365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144835, intron 17 of 44)	intron (NM_144835, intron 17 of 44)	16890.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	8.99827676074726	8.67796857798138	8.99965950478594	9.03086908926268	8.8072701725478	8.84355035128273	9.11023783897216	8.76514097468369	-0.0589019356145372	0.719964334940524	0.888028373825666
Merged-chr7-145029811-4	chr7	145029723	145029923	+	899.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89898.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	4.23214747833429	4.14446338653176	4.32256710744585	4.37746434807785	4.43753139339427	4.40560939569241	4.06863303334546	4.48213600081584	0.195933130726158	0.617586842407208	0.835629844601338
Merged-chr18-80416733-4	chr18	80416636	80416836	+	961.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	-52482.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	5.20463998145744	4.90858544389903	4.77314881591807	5.72325534848278	5.08504380053451	5.07340887067933	5.4014461846125	4.77007613244221	-0.233687754672534	0.543885452524814	0.794949026166117
Merged-chr15-38290320-3	chr15	38290227	38290427	+	783.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9573.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	3.25538573596655	3.27201007463557	3.84167073189966	3.71972351514587	3.36023152594499	3.4356497737177	3.43047791075827	3.83915692981334	-0.0752077109800791	0.892993100096963	0.960011416278534
Merged-chr9-47529818-3	chr9	47529714	47529914	+	954.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310841)	promoter-TSS (NM_001310841)	-356.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	4.40663942086265	4.29977223645315	4.53198145193001	4.09358277470686	4.39062686282877	4.53774288700357	4.65844770332852	4.6779834558294	0.557488514861018	0.142530923155257	0.420143331819144
Merged-chr3-100439292-4	chr3	100439203	100439403	+	970.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12898.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	4.60458912327698	4.96390672388945	4.78244681828268	5.01883820281271	5.5337674728289	5.04011403827789	5.08537879939914	5.39306210165446	0.797458767232064	0.0172369408939752	0.115724223343922
Merged-chr2-132235337-3	chr2	132235263	132235463	+	843.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12425.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	3.27034629962121	3.58139194833905	3.44573007315243	3.5680222675843	3.4348428740408	3.38118022477226	3.31996777625054	3.54850099779793	-0.190636913308178	0.710579492464031	0.884197177759025
Merged-chr10-121351332-4	chr10	121351197	121351397	+	961.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001361015, exon 1 of 13)	exon (NM_001361015, exon 1 of 13)	347.0	NM_001361015	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	4.46669410820219	4.63223955479364	4.81683452009857	4.51864636950332	4.7187153851672	4.68575404609083	4.40260457848899	4.77922340460858	0.105294043997369	0.768218238600606	0.909334408816333
Merged-chr16-90301092-4	chr16	90300986	90301186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16583.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	6.68111954425074	6.88431479565979	6.43630642324217	6.89265211290729	6.67211341162064	6.66569178042512	6.55577927971116	6.56845205078647	-0.189085335418056	0.381774885738792	0.683975700780304
Merged-chr13-98819300-4	chr13	98819194	98819394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3845.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	5.10226097279046	5.33064838612061	5.37086513038085	5.7678976093462	5.78291513934949	5.2826544439852	5.53840419211826	5.56257982593596	0.212560237295287	0.500408768011002	0.768850577358824
Merged-chr11-119524654-4	chr11	119524547	119524747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	23173.0	NM_008730	18164.0	Mm.5142	NM_008730	ENSMUSG00000025582	Nptx1	D11Bwg1004e|Np1	neuronal pentraxin 1	protein-coding	6.18605229762489	6.14955900237208	5.43127303691797	5.66186045682955	5.71000171896007	5.92047550210891	5.90161045026618	5.63522063407065	-0.154656223590538	0.598791585834301	0.826075904411274
Merged-chr18-53266544-4	chr18	53266442	53266642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	20880.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	8.57078581469989	8.59970697350841	8.80020978347207	8.77754340106945	8.51349561089117	8.53941329218282	8.70420976248292	8.53799644084071	-0.148856475261389	0.327453697216008	0.638965891721937
Merged-chr3-95135144-4	chr3	95135035	95135235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153121, intron 1 of 2)	intron (NM_153121, intron 1 of 2)	1047.0	NM_153121	217779.0	Mm.341945	NM_153121	ENSMUSG00000053769	Lysmd1	2610022K04Rik|AI415311	LysM, putative peptidoglycan-binding, domain containing 1	protein-coding	5.26854417552396	4.8027894679118	5.06527468689686	4.84951361393749	5.8030784971833	5.38245998373813	5.41792766010836	5.93330951251874	1.19308178937882	0.000128812108364613	0.00251060160495202
Merged-chr18-62182449-4	chr18	62182356	62182556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013754, intron 1 of 1)	intron (NM_001013754, intron 1 of 1)	2356.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	5.73987233093464	5.92338633717754	5.58577548103772	5.54220427398873	5.6514177385632	6.07336266745099	5.61112823570755	5.43656479594142	0.0158102897651056	0.955745295915808	0.984292813605202
Merged-chr17-35673801-4	chr17	35673678	35673878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010364)	promoter-TSS (NM_010364)	-35.0	NM_010364	14885.0	Mm.10182	NM_010364	ENSMUSG00000001524	Gtf2h4	AW545633|BTF2 p52|p52	general transcription factor II H, polypeptide 4	protein-coding	6.37892415073479	6.20443080851546	5.86625856752529	6.22406517169149	6.55551283189098	6.44606545054485	6.55647451515185	6.52454094266005	0.502395951027824	0.0262989580677977	0.153689124491607
Merged-chr6-108658579-4	chr6	108658462	108658662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104577, intron 1 of 6)	intron (NR_104577, intron 1 of 6)	-2067.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	7.89511389875521	8.10281587853378	8.63671078247192	8.32537545940287	8.0073090137548	7.60891418360931	8.21335413836937	8.02576190074316	-0.366981376276401	0.0890394837168016	0.325572042138093
Merged-chr7-29155637-4	chr7	29155527	29155727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146023, intron 3 of 7)	CpG	583.0	NM_001146023	73833.0	Mm.260890	NM_028661	ENSMUSG00000030590	Fam98c	1110006G06Rik|AI836081|AV026483|B230110F21Rik	family with sequence similarity 98, member C	protein-coding	6.16444063804181	6.30639093890231	6.04222767492883	5.91489023953333	6.13227984106219	6.12929862820824	5.94532628057791	6.23701738441899	0.016970091904276	0.944108594560527	0.979941468055742
Merged-chr16-55757708-3	chr16	55757619	55757819	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	64419.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	6.38873172892505	5.95116742026235	6.13318503026446	5.27996689135603	6.1752751551296	6.51400088846564	6.27159129867623	6.31717324558905	0.520717951902866	0.088297711137354	0.324200081556057
Merged-chr3-59205713-4	chr3	59205626	59205826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	5156.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	5.74223781866715	6.18315501752763	5.14309856692499	5.75066191066052	5.54350125136683	5.76635659350434	5.32752519021701	5.69036895272679	-0.284946105562004	0.376241016522626	0.679069384462916
Merged-chr7-28907420-4	chr7	28907310	28907510	+	962.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021895, intron 8 of 20)	intron (NM_021895, intron 8 of 20)	25754.0	NM_001110807	60594.0	Mm.476990	NM_021894	ENSMUSG00000054083	Capn12	CANP 12	calpain 12	protein-coding	5.43122416381274	5.26665899531335	4.75077704971644	5.48633608897714	5.01637713354836	5.16049114754318	4.64146821751352	4.83049244880722	-0.660958360608025	0.0615859014566487	0.262633927253178
Merged-chr11-44378099-4	chr11	44377996	44378196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21967.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	7.60463628261411	7.97572397190909	7.99972191003978	7.70041200509461	7.83590871224062	7.83541099999789	7.63773668345186	7.57386887006919	-0.130592632422779	0.479579308929637	0.755306574874285
Merged-chr3-101812670-3	chr3	101812547	101812747	+	743.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172295)	TTS (NM_172295)	23576.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	3.36199062631066	3.72858804186084	3.53336885161059	3.42742866319764	3.30780160477727	3.53707994900262	3.28900589855948	3.72843230943611	-0.147692641986992	0.77831546392904	0.913689436928734
Merged-chr18-3383130-4	chr18	3383016	3383216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029402)	promoter-TSS (NM_029402)	-109.0	NM_029402	71745.0	Mm.291707	NM_029402	ENSMUSG00000024231	Cul2	1300003D18Rik|4932411N15Rik|AI327301|mKIAA4106	cullin 2	protein-coding	6.81549267885537	7.40251382494429	7.80325800848796	7.50176885641129	6.82394542057342	7.1511843486287	7.05245014367101	7.2217407718511	-0.493397531833313	0.0418897715036507	0.207371485070384
Merged-chr17-26507431-4	chr17	26507345	26507545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013642, intron 2 of 3)	intron (NM_013642, intron 2 of 3)	1027.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	7.97934188324923	8.0983096366176	7.9018158760525	7.69335070002495	8.18650771203474	8.3687553351429	8.12870462165393	8.12560366154205	0.367190377850909	0.0340722951303347	0.182211261839376
Merged-chr12-73687573-4	chr12	73687500	73687700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	102804.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	7.29703214608015	7.31534874913173	7.36869062758977	7.51055075012858	7.13944012814733	7.10535780632434	7.2199274209436	7.04243820254093	-0.345985159090605	0.0567404338164921	0.249535207823546
Merged-chr3-146813060-4	chr3	146812965	146813165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011100)	promoter-TSS (NM_011100)	-119.0	NM_011100	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	6.63731981152333	6.58123471025667	7.31409402218532	6.48183449931072	6.60349397181403	6.7512797179444	6.68048306205384	6.75355172497189	-0.130619082371657	0.605487262781864	0.828874510692961
Merged-chr18-60732541-3	chr18	60732486	60732686	+	982.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	555.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	3.62441732901723	3.24752845909723	3.57671977365529	3.77437790485219	3.31967945537123	3.35370146032189	2.95252653819858	3.41793867532709	-1.05739312347276	0.0703515065113233	0.28410018620047
Merged-chr11-68417990-4	chr11	68417887	68418087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-14138.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	6.31998762926022	6.23624468537436	6.08994444403877	6.17722911914712	6.16446439509085	6.26565163955224	6.1403223632534	6.04271336122735	-0.0788926935709138	0.727275925896266	0.891423086495076
Merged-chr7-113193228-4	chr7	113193112	113193312	+	910.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14253.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	4.81737324652161	5.01345603416736	5.49109136075588	5.49521478751613	4.62992284022752	4.87233768301534	5.17309341822541	4.85461562472596	-0.687615211281814	0.0563657378609854	0.24860929825301
Merged-chr13-55858644-3	chr13	55858538	55858738	+	834.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27213.0	NM_011097	18740.0	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	3.54211113419697	4.21525233331249	3.71947334549788	4.15074679249947	3.62315193345495	3.83884687956543	3.59114116735701	3.96731011528346	-0.533109525351463	0.293105009422648	0.605634790273762
Merged-chr1-182909817-4	chr1	182909713	182909913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-44975.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	6.69768177981881	6.3685934331501	6.05365242211093	6.54627572361268	6.51774387429557	6.23273935907144	6.69228204710198	6.51357488675746	0.0853132791613676	0.72578286053604	0.890921883682774
Merged-chr18-37926165-7	chr18	37926067	37926267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305981, intron 1 of 28)	intron (NM_001305981, intron 1 of 28)	9309.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	4.64478249122201	4.59705756900525	4.91614247145947	4.78842363739867	4.95693055888867	5.08859774408999	4.78430650403665	5.19247883649905	0.535393609464345	0.106427583987428	0.359620650398345
Merged-chr12-34142967-4	chr12	34142856	34143056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 24 of 27)	intron (NM_001271386, intron 24 of 27)	185285.0	NM_011658	22160.0	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding	6.0466948260137	6.01584324217846	5.9437412926064	5.96293396743171	5.8136300350411	5.62502735657812	5.72791511401126	5.70169380726302	-0.429350953921793	0.0793802082763977	0.305020721491347
Merged-chr16-15986327-4	chr16	15986191	15986391	+	950.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 7 of 18)	AT_rich|Low_complexity|Low_complexity	99005.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	3.84197738599885	4.17431576500039	3.84253906128943	3.46258503907426	3.91417259873856	3.56381864710595	3.72631246087275	3.73916806096638	-0.303048310010673	0.551415722004896	0.79892812604468
Merged-chr14-121929540-4	chr14	121929447	121929647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-13773.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	6.8146288054896	6.79542640825422	7.05144048285962	6.99706825835136	6.6267544407505	6.45870541387628	6.65244866638808	6.44998913917671	-0.523946605881092	0.0109075063016145	0.0839880345134808
Merged-chr1-75219295-4	chr1	75219202	75219402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009447)	promoter-TSS (NM_009447)	-8.0	NM_001313724	22145.0	Mm.1155	NM_009447	ENSMUSG00000026202	Tuba4a	M[a]4|Tuba4	tubulin, alpha 4A	protein-coding	7.31656507355131	7.29296114597591	6.81122193679884	7.06625801754685	6.91402101385379	6.97178959532697	7.57700701112738	7.1423927523603	0.055991634963853	0.810379531272048	0.92679579587174
Merged-chr10-96622522-3	chr10	96622407	96622607	+	898.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007569, exon 2 of 2)	3' UTR (NM_007569, exon 2 of 2)	5506.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	3.77235898305359	3.93763010918858	3.40026655587552	3.20235743378816	3.64000253934152	3.63593977975664	3.19228880108703	3.57117150310291	-0.270310069819388	0.635718962813306	0.845870456193819
Merged-chr18-4908921-4	chr18	4908823	4909023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96437.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	6.22923174436618	5.96920755530753	6.00908449142596	6.2659997017845	6.149492277007	5.86468436155365	6.35337909059383	5.78985320684798	-0.103880821357906	0.68695862100935	0.872008911167824
Merged-chr8-120763424-4	chr8	120763309	120763509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	24770.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	5.32957999549591	5.08558445208197	5.30051524302427	5.22333870740845	5.3334196914488	5.13413253474399	5.54401086868397	5.56835994853333	0.3096749398967	0.289700786753577	0.601779997997418
Merged-chr13-59001404-3	chr13	59001299	59001499	+	956.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	193702.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	3.27297388368396	3.49873399605702	3.74864682585554	3.55730308227658	4.16226634520332	3.7525145852208	4.69316218322111	4.37582542681501	2.06984609567158	7.17112755443278e-05	0.00153394307613987
Merged-chr2-68843535-4	chr2	68843429	68843629	+	803.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17912.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	4.63011985785976	4.39415896995705	4.43077271379796	4.57604539911538	4.34421237593758	4.21210254002507	4.81131776295631	4.51172288849926	-0.0599342462023677	0.876066421821724	0.953397811847021
Merged-chr15-81960947-4	chr15	81960861	81961061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282040)	promoter-TSS (NM_001282040)	-31.0	NM_001282041	29858.0	Mm.18939	NM_013872	ENSMUSG00000022474	Pmm1	C77612	phosphomannomutase 1	protein-coding	7.9112751411142	8.2354253317869	7.92683652377951	7.91941486032067	7.88793630533815	7.87158607345168	7.93718475709476	7.66289880072387	-0.206964978824551	0.235042319085789	0.54500224434485
Merged-chr3-103021026-4	chr3	103020928	103021128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310693, intron 1 of 17)	CpG	482.0	NM_144901	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	7.78619395622879	7.988286311777	7.81850999262446	7.57744745051396	8.07623832387274	7.9883499684633	8.13110851356142	7.55950722716523	0.21352684349267	0.277739354379662	0.589773553263424
Merged-chr19-47135859-6	chr19	47135749	47135949	+	919.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133746, exon 2 of 3)	exon (NM_133746, exon 2 of 3)	2445.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	4.14816266966353	4.01564221084746	3.85494277777756	3.83556460752057	4.06784146765645	3.86067207076907	4.21382659599256	4.2708976419413	0.404443467757458	0.344423800264074	0.652914285727938
Merged-chr15-103315328-3	chr15	103315312	103315512	+	819.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013866, exon 7 of 8)	exon (NM_013866, exon 7 of 8)	-4974.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	2.49089177951697	2.84855628776707	2.90060166790026	2.7244708647733	2.82499183736532	2.94838048911662	2.83033142026512	2.89904783977523	0.573118970897313	0.371400043314647	0.675446164536008
Merged-chr11-63921850-2	chr11	63921750	63921950	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_018805, exon 1 of 2)	exon (NM_018805, exon 1 of 2)	434.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	3.527948651153	3.12218226227437	3.73679831366099	3.39333202708618	3.47969391356745	3.64680705835223	3.56905194908657	3.99359449902338	0.717486310760883	0.180290110468546	0.476615404755454
Merged-chr1-134095235-4	chr1	134095122	134095322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16020.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	6.95075681164573	6.81146836543854	7.05190528152773	7.22538714944559	7.01333610288311	6.90230792135315	7.27472993337027	6.82429543726279	-0.0167474631892022	0.937058199015394	0.977210490892393
Merged-chr10-60350938-4	chr10	60350843	60351043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	4092.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	6.21953965466201	5.85300401320908	5.43784010839813	5.79819905159513	6.2190304732132	6.19883759626057	6.3421090197844	5.95342930686249	0.522560211159105	0.0527003739629994	0.239338985408813
Merged-chr8-61909940-3	chr8	61909857	61910057	+	871.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7263.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	3.63516536118442	3.29730579303923	3.83236552041849	3.67796017201431	3.52916023360806	3.58125238530861	3.76943918581425	3.73559586188083	0.0933687684511756	0.851216542349938	0.943894442930937
Merged-chr18-39800383-4	chr18	39800300	39800500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26903.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	7.69869870777582	8.06054365193113	7.8700249279343	7.72355358333283	7.70941743818709	7.83537012609843	7.82476213724195	7.43847921164849	-0.174002840213895	0.349364389381508	0.656941686201213
Merged-chr16-95701951-4	chr16	95701860	95702060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011809)	promoter-TSS (NM_011809)	-447.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	7.20013651038419	7.39545005474643	7.1084392117815	7.21556278399987	7.20030827561285	7.23662948754145	7.53865806411717	7.10344819185245	0.0587087909371071	0.76282506682276	0.907011913026374
Merged-chr19-34526913-3	chr19	34526825	34527025	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021460, intron 1 of 9)	intron (NM_021460, intron 1 of 9)	549.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	4.4320063297408	4.48992772585609	4.9114153062354	4.42046181973735	4.99963140242856	4.74711322687434	4.6719864540284	5.20257254860928	0.745223578717814	0.0410899237898095	0.205043444015343
Merged-chr1-195012736-4	chr1	195012644	195012844	+	933.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4655.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	4.6221021827017	4.82812711959359	4.7751702301139	4.45176884000201	4.81285956710154	4.87332997261077	4.51879326497886	4.53642622729506	0.0711592335914214	0.84336090060913	0.940504575562964
Merged-chr6-118134867-3	chr6	118134788	118134988	+	976.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030165, intron 1 of 7)	intron (NM_030165, intron 1 of 7)	3942.0	NM_001362149	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	3.58742898472834	3.63966373650583	3.34830575338694	3.81625168947594	3.82090931888178	3.64706894536929	3.5741331068739	3.69085548354944	0.207642024314065	0.676317203969535	0.867097153109958
Merged-chr4-46553952-4	chr4	46553862	46554062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	12478.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	5.72276967912946	5.40739097939902	5.93254611093377	5.86917997461216	5.70402126305553	5.68191631634309	5.85899715003226	6.01091370686823	0.105602886547431	0.697554696502759	0.877936058816528
Merged-chr3-146422015-4	chr3	146421969	146422169	+	787.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253770, intron 4 of 13)	L1M2|LINE|L1	17427.0	NM_001355661	99167.0	Mm.200783	NM_138744	ENSMUSG00000036825	Ssx2ip	AU014939|AU042321|Adip	synovial sarcoma, X 2 interacting protein	protein-coding	3.85365378613632	3.46609833050341	3.902024541648	3.9429334086144	3.99194363144765	3.57428607463448	3.97454483751611	3.69704348852874	0.0549241471000821	0.910472071971564	0.96669834733672
Merged-chr15-34775927-4	chr15	34775822	34776022	+	904.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61433.0	NM_181317	16539.0	Mm.71045	NM_181317	ENSMUSG00000050963	Kcns2	E130006J24Rik|Kv9.2	K+ voltage-gated channel, subfamily S, 2	protein-coding	3.95417165237707	3.85292214850161	3.8452237242007	4.24803825714766	4.17692852094759	4.02336487098683	4.33686993418855	4.39226310718614	0.595856242567679	0.174248283006473	0.468561334949669
Merged-chr8-71747309-3	chr8	71747210	71747410	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21629.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	4.18766407888861	4.22541050028353	4.69231389606755	3.88497323955029	5.23098975929219	5.17034836919748	5.45860990983673	5.65313054006588	2.33781743581539	4.04814271982292e-10	2.80022109479374e-08
Merged-chr1-64615088-4	chr1	64615023	64615223	+	919.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025964, exon 2 of 3)	exon (NM_025964, exon 2 of 3)	2045.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	3.87030052438237	4.00469133324302	4.26063894791841	4.14976468803055	4.34208220667841	4.04861181768545	4.19904966195058	4.25793462131578	0.35040775508291	0.394706004297704	0.693696530342229
Merged-chr5-3512771-3	chr5	3512654	3512854	+	650.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-31079.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	3.7502206514158	3.46911457340353	3.54752288800855	3.61399182704173	3.58472750986762	3.48443829559425	3.73445747685745	3.48945397121549	-0.0641622596205923	0.89476274724672	0.96069135232764
Merged-chr11-11707047-3	chr11	11706947	11707147	+	832.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025597, intron 2 of 7)	intron (NM_001025597, intron 2 of 7)	16870.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	3.99329995912912	3.88030549650103	4.37078348374577	4.42254173956203	4.16380965590048	3.5785467818741	3.76818028285461	3.8902578446549	-0.841275087339334	0.0874024467312526	0.322459895085463
Merged-chr17-54002391-2	chr17	54002291	54002491	+	677.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11760.0	NM_018751	20888.0	Mm.10108	NM_018751	ENSMUSG00000023943	Sult1c1	(PST)G|P-SULT|ST1C1|Stp2|Sult1a2|mOLFST	sulfotransferase family, cytosolic, 1C, member 1	protein-coding	3.020186273998	2.81102510786358	2.9050213168851	3.16550311861263	2.78323943849886	2.8830970423783	2.76966070049194	2.77681976595664	-0.858355690326364	0.173038345853344	0.466912939061192
Merged-chr2-44873904-2	chr2	44873804	44874004	+	883.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-12282.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	2.95248176270899	3.2686724167039	3.09497921656707	3.2575777701147	3.52532482780116	3.71318971649247	3.38235174284872	3.22222263839766	1.1108153622034	0.0501563724279603	0.232275890243968
Merged-chr3-88148509-4	chr3	88148373	88148573	+	814.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	6101.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	3.69336214546306	3.69926011168273	3.45186022016348	3.86687381201935	3.66071384649378	4.0200520680623	3.97129937812573	3.98683913983042	0.609987930493212	0.202153214650002	0.50461441050349
Merged-chr7-100123699-4	chr7	100123611	100123811	+	943.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2211.0	NM_133692	67967.0	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	4.02524858044365	4.47761457963646	4.02580109618193	4.32418892558941	4.41368054262263	4.6104906491941	4.25417490285283	4.27041881847738	0.370245099132689	0.364230364819957	0.669167414436665
Merged-chr11-21048884-4	chr11	21048774	21048974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42450.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	5.73559745804233	6.29514879855909	5.41684855735567	5.84341001068981	6.16355754438464	6.0345007072938	5.60092372504651	5.85502722123095	0.110337530054689	0.715131544312606	0.886010584897636
Merged-chr5-107597589-4	chr5	107597481	107597681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163461)	promoter-TSS (NM_001163461)	58.0	NM_133248	170823.0	Mm.41417	NM_133248	ENSMUSG00000029276	Glmn	9330160J16Rik|AW227515|Fap48|Fap68	glomulin, FKBP associated protein	protein-coding	6.86687904684938	6.8959208227584	7.19215565289188	6.89796656574927	6.80990129968088	6.42913664845703	6.33976130067211	6.72360911595975	-0.517248859125808	0.0202345832278051	0.129058081099863
Merged-chr6-90477307-3	chr6	90477228	90477428	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001355668, exon 3 of 3)	3' UTR (NM_001355668, exon 3 of 3)	14752.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	4.06162838200685	4.51284928207497	4.59142115946626	4.79130979900305	4.07311136091953	4.39151513002412	4.24507888045108	4.2135886828716	-0.71568530507331	0.0867356285170306	0.321209032577518
Merged-chr2-112217804-4	chr2	112217672	112217872	+	883.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6BA|LTR|ERVK	-22069.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	4.40271199155105	4.25853573462108	4.93060349834099	4.27194045357868	4.45105632397493	4.4887978762215	4.38350015005067	4.35631070813451	-0.143217292932737	0.722410296234728	0.889150263279452
Merged-chr13-34250867-4	chr13	34250768	34250968	+	915.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	87904.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	4.72971267886557	4.79897204379479	5.05701751001767	5.24915017876661	4.9932551610175	4.77964804049464	4.93334098982923	5.05355938057781	-0.0943701027462196	0.781324661099991	0.914858982946737
Merged-chr13-111640491-3	chr13	111640375	111640575	+	800.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45703.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	3.8663941778199	3.84750366742018	4.18185282509095	3.88132047970272	3.56088706259172	4.0394463145542	3.79944631158912	3.96275456809907	-0.290371292246822	0.530401864948789	0.786525451847713
Merged-chr17-45610444-4	chr17	45610310	45610510	+	867.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-8308.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	4.23287401434702	4.0492382528999	3.63299295725047	3.68300921719424	4.12015660190297	4.27719326695119	3.73966931229186	4.01351192778014	0.366884488798196	0.440011668642387	0.727516621656131
Merged-chr5-100559566-4	chr5	100559469	100559669	+	942.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139198, intron 3 of 4)	intron (NM_139198, intron 3 of 4)	12636.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	4.66365106576014	4.42497739145231	4.52736466521888	4.89492397357215	5.52364814126025	4.71055092690858	5.22152269017839	5.32432746945374	1.12905347639764	0.00245883329188046	0.027414989799931
Merged-chr10-77522603-3	chr10	77522536	77522736	+	893.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6823.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	4.07808717658489	4.12794658952916	4.26454718218714	4.41575347172809	4.30466072573253	4.25215265711293	4.15699470176852	4.12527598487827	-0.0679110050735586	0.866154982594098	0.949861736890724
Merged-chr2-150779372-4	chr2	150779268	150779468	+	992.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-7428.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	4.8465180370694	4.31090929902797	5.09355601325041	4.87297944558672	4.72785804699249	4.38141083332966	4.71823696454136	4.49391824694381	-0.456330496199369	0.239694742669394	0.550198320840397
Merged-chr6-128850113-4	chr6	128850024	128850224	+	978.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001254946, exon 3 of 3)	exon (NM_001254946, exon 3 of 3)	-23809.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	4.50510142956348	4.70125396798432	4.3742333518757	4.56796168110815	4.79194043323449	4.30224551929547	4.52595755417982	4.58359763586013	0.0629194750258162	0.865615215368327	0.949726204279319
Merged-chr11-63923669-4	chr11	63923570	63923770	+	966.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1386.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	4.2768924966748	4.14267013074813	3.85549113765423	4.37368613108978	4.33594592400514	4.57646670125189	4.53789768371111	4.36203441226028	0.620078463266949	0.129564572345244	0.400550586125874
Merged-chr3-58362768-4	chr3	58362685	58362885	+	957.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-51935.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	5.11973665058624	4.99789758613913	5.21100314779055	5.37289474615792	4.72820667751267	4.81227408746669	4.93008520014683	4.91442300530004	-0.690655485541861	0.0314632706502321	0.172829459917647
Merged-chr2-66180040-4	chr2	66179935	66180135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55242.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	6.12825742146782	5.93020292197349	5.84106223070317	6.26794353899953	5.91905836966551	5.77503865739589	6.43852708597085	6.22041686364522	0.0748557045626513	0.783135174203122	0.915496954483708
Merged-chr7-44548896-4	chr7	44548798	44548998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011131)	promoter-TSS (NM_011131)	-83.0	NM_011131	18971.0	Mm.16549	NM_011131	ENSMUSG00000038644	Pold1	125kDa	polymerase (DNA directed), delta 1, catalytic subunit	protein-coding	8.76416431735536	8.83257193304699	8.47652166665473	8.56485032649052	8.77631234003378	8.85875914260374	8.86490441337457	8.58914579864159	0.138342392704714	0.393220664519305	0.692367387227111
Merged-chr18-36482663-4	chr18	36482562	36482762	+	788.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28167.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	4.19126418554515	5.30279361799194	4.69810488866349	4.1407614321413	4.45514098594916	4.2695029585362	4.31825706391668	3.90502381605904	-0.946726622852258	0.0560826637356654	0.247867613911265
Merged-chr13-45974002-4	chr13	45973926	45974126	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9035.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	5.3282568998505	5.55685278058073	5.35982119103831	5.31432938965438	5.64717165467147	5.80350803506624	5.4480388909215	5.08799337048296	0.235745087836671	0.432770803562048	0.722611204268057
Merged-chr17-5511657-4	chr17	5511555	5511755	+	967.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	19055.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	5.20660935939159	5.69374936737815	5.17638541566387	4.55471753615488	5.40815566737177	5.03577792008994	5.11898266238899	4.76967086029303	-0.197071211386978	0.617887704185765	0.835752297359353
Merged-chr6-54715904-2	chr6	54715807	54716007	+	762.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34283.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	3.75702447420156	3.1128518106631	3.33787001804506	3.28847329726315	3.47336990375124	3.45374229070602	3.90533560453345	3.33617904472984	0.557914403827867	0.318818526940067	0.630681561032378
Merged-chr1-65154990-3	chr1	65154903	65155103	+	762.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24139.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	3.89905365279297	4.18690346302538	4.34705231369413	4.59265054869267	3.44320980445216	3.58221123304488	4.12396698530659	3.9999999156102	-1.28178882243709	0.0129750067588	0.0948834008678995
Merged-chr17-27028049-4	chr17	27027991	27028191	+	924.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149749, intron 1 of 6)	intron (NR_149749, intron 1 of 6)	536.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	4.596342285702	4.42953689083623	4.39723370620435	4.40853409429981	4.58014827842984	4.43571458373744	4.09113076750944	4.51796122605642	-0.0680552166566258	0.858921122984471	0.946576014812915
Merged-chr1-152688192-3	chr1	152688100	152688300	+	779.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-62351.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	3.45243334300102	3.81443763599305	3.72489642146536	3.84378357526945	3.28348930762634	3.37118027804853	3.80229285359264	3.62079941169876	-0.609314440446633	0.243965805191595	0.555012849901961
Merged-chr1-151584873-7	chr1	151584768	151584968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	MTD|LTR|ERVL-MaLR	13495.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	4.86904826081146	4.84259241022303	5.13370358613753	5.07027325276505	4.74790708062538	4.76290640898376	4.95125776214343	4.97197893954099	-0.26330342238068	0.41812936380363	0.711669774896667
Merged-chr10-115251431-4	chr10	115251354	115251554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025706)	promoter-TSS (NM_025706)	39.0	NM_025706	66687.0	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	7.40571166726675	7.84747292086324	7.13667709593089	7.25690054873915	7.70320143073858	7.78949092339383	7.8298612367064	7.71401306814797	0.420391950574343	0.0428456355067646	0.210484470269584
Merged-chr7-45700910-4	chr7	45700778	45700978	+	967.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009800, intron 2 of 8)	intron (NM_009800, intron 2 of 8)	911.0	NM_009800	12348.0	Mm.27736	NM_009800	ENSMUSG00000003273	Car11	Ca11	carbonic anhydrase 11	protein-coding	4.58595941452154	4.52456429189898	4.4192894892165	4.4768235096943	4.65771820505906	4.24623275069062	4.74584272102095	4.69606546492826	0.232846741139719	0.523826919980071	0.782647016014066
Merged-chr11-100344487-4	chr11	100344377	100344577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	10070.0	NM_010257	14459.0	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	7.38033996902211	7.13690128791998	6.96160906612952	6.62910808747887	7.06093954571725	7.38737435103937	7.00250329401577	7.12816166858618	0.146895248353079	0.526356612162917	0.783666693799035
Merged-chr15-86220374-4	chr15	86220334	86220534	+	949.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	5975.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	3.98698913110136	4.08614426260323	4.48070852807158	4.97644442334764	4.07778796902936	4.5266845007622	4.53869207720182	4.76975405711871	0.0891036667849918	0.853421268632596	0.944788460884744
Merged-chr9-48740320-2	chr9	48740220	48740420	+	640.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033324, intron 3 of 6)	intron (NM_001033324, intron 3 of 6)	95625.0	NM_001033324	235320.0	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	2.83938291305106	2.82535447609013	2.83966695390211	2.76806485754803	3.23196896698356	3.44333541578949	3.20685950691179	3.37388144247994	2.05134004168634	0.000364570003029985	0.00594768009297989
Merged-chr10-68378346-4	chr10	68378250	68378450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-57208.0	NR_045357	75148.0	Mm.23505	NR_045357	ENSMUSG00000112157	4930545H06Rik	-	RIKEN cDNA 4930545H06 gene	ncRNA	7.396706928908	7.56243290214275	7.52238731351799	7.68703055863461	7.53698387170791	7.30786124481641	7.83872188898741	7.23210681319344	-0.0640637641502412	0.752193349206659	0.902363969099289
Merged-chr11-118211228-3	chr11	118211136	118211336	+	964.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	1506.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	4.27967704350151	3.98136023096144	4.28037552012137	4.58074148407426	3.61073156877719	3.73724536943751	3.94835260553734	3.91064276886963	-1.38969215892008	0.00270935926684283	0.0295057348920755
Merged-chr1-54557688-4	chr1	54557591	54557791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163314)	promoter-TSS (NM_001163314)	-7.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	6.61199216009192	6.31506794787102	6.19554678852792	6.32854573034153	6.58996389871254	6.47057469525197	6.42268098848212	6.38190940955182	0.157538546891034	0.477946143131478	0.754100337418383
Merged-chr17-56884982-4	chr17	56884864	56885064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030141, exon 11 of 14)	exon (NM_030141, exon 11 of 14)	9331.0	NM_030141	78625.0	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	5.68314314612662	6.30855235680638	5.60088136868792	5.53285695448165	6.18104967490082	5.66116572073291	5.73300682517721	6.25310434509889	0.272226124931377	0.38441973387283	0.685951673034199
Merged-chr2-62441463-4	chr2	62441362	62441562	+	895.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29231.0	NM_001159543	13482.0	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	3.93520290847672	3.7405783965469	4.17600456917437	4.25527937215726	4.04447458788208	3.76183199918995	4.24098280224203	4.44726910456284	0.246634132306853	0.596945736429584	0.825000496540423
Merged-chr3-54724154-8	chr3	54724060	54724260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358017, intron 22 of 24)	intron (NM_001358017, intron 22 of 24)	11204.0	NM_027148	69639.0	Mm.29253	NM_027148	ENSMUSG00000027752	Exosc8	2310032N20Rik|CIP3|mKIAA4013	exosome component 8	protein-coding	5.14208624936077	4.63620877832849	4.88531508348317	5.05359798070112	4.7489426259322	4.94801223937918	4.6713251930829	4.95148990367112	-0.2356220567326	0.489191684266413	0.761620931360531
Merged-chr8-83972818-4	chr8	83972718	83972918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008854)	promoter-TSS (NM_008854)	-160.0	NM_008854	18747.0	Mm.19111	NM_008854	ENSMUSG00000005469	Prkaca	PKCD|Pkaca	protein kinase, cAMP dependent, catalytic, alpha	protein-coding	9.02421402568468	9.30655588401507	9.19703781122682	9.17432059855068	9.10720766876001	9.0999440563331	9.25724553815799	9.10860921077537	-0.0442355416918088	0.757627650166294	0.904815773586341
Merged-chr2-129607101-4	chr2	129606952	129607152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	11590.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	4.63307442697055	4.51170656784899	4.86142512543913	5.07100035024769	4.77175176262947	4.72450473577088	4.83806288648015	4.74957104271354	-0.0724995915576754	0.838842185960114	0.938853173799904
Merged-chr11-76458972-4	chr11	76458926	76459126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 9 of 21)	intron (NM_001346670, intron 9 of 21)	9439.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	5.96623491605268	5.97796202095241	5.71565847260364	5.3214124704236	5.84257381427306	5.75943900408394	5.40655764112135	6.04321174559533	0.0436033167145592	0.886292148846566	0.957289664078144
Merged-chr11-68474701-4	chr11	68474597	68474797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 2 of 18)	intron (NM_177320, intron 2 of 18)	-28322.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	6.77822239140461	7.05110760097114	6.40604339746883	5.95876644649558	6.59023265940349	6.84289263722196	6.61794915772738	5.97587422794334	-0.0921803831400122	0.767270887778313	0.908989684325729
Merged-chr8-84104973-4	chr8	84104879	84105079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357322)	promoter-TSS (NM_001357322)	-182.0	NM_172502	212123.0	Mm.260557	NM_172502	ENSMUSG00000037103	Dcaf15	6720484B16	DDB1 and CUL4 associated factor 15	protein-coding	8.55568928800294	8.83729812939794	8.35311002289001	8.49447052993276	8.58781594035199	8.64693045939501	8.30348129676425	8.50842111997699	-0.0687951923604912	0.693333547542086	0.875305395019895
Merged-chr11-69323901-4	chr11	69323809	69324009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172560)	promoter-TSS (NM_172560)	-36.0	NM_172560	216846.0	Mm.28774	NM_172560	ENSMUSG00000032782	Cntrob	9830165K03Rik|Lip8|Nip2	centrobin, centrosomal BRCA2 interacting protein	protein-coding	8.1535515067895	8.41640239551401	7.7416585462232	7.96536595447279	8.14998976733716	8.30183475495009	7.95493982032303	7.99474590672651	0.0184783156925174	0.92565173850379	0.972574816051611
Merged-chr1-192753493-4	chr1	192753406	192753606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 2 of 11)	intron (NM_144881, intron 2 of 11)	17713.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	6.47522734141788	6.43509194274688	6.16491988519428	6.89423116702886	6.6989623679461	6.56419984661663	6.73326203913329	6.66333603111675	0.180395402854498	0.458576162540844	0.74144172337427
Merged-chr10-83360141-4	chr10	83360023	83360223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026579)	promoter-TSS (NM_026579)	-98.0	NM_026579	28109.0	Mm.196210	NM_026579	ENSMUSG00000020255	D10Wsu102e	AI747614|C430041I18Rik	DNA segment, Chr 10, Wayne State University 102, expressed	protein-coding	8.06744568621516	8.25539549494493	8.11998656117857	8.10372993422602	8.05264493150881	8.1929558840717	8.23985219269138	7.93991038699952	-0.0367487790654292	0.820458059477853	0.931216561407907
Merged-chr2-11333460-4	chr2	11333352	11333552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6037.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	6.45683275085544	6.05129181290639	6.49123643410714	6.81356780989521	6.57201019992138	6.35341038906603	6.32004208236693	6.31083748320023	-0.14292383374035	0.574056263303445	0.812063655973817
Merged-chr12-38787893-4	chr12	38787791	38787991	+	995.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163154, intron 1 of 9)	intron (NM_001163154, intron 1 of 9)	4180.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	5.56029782809628	5.5422800752683	5.42460281077056	5.94954533458091	5.28830027552425	5.2400570878742	5.27744616898464	5.36179903382009	-0.638117237540608	0.0302026861975392	0.168044790186402
Merged-chr1-89070922-4	chr1	89070793	89070993	+	851.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133816, intron 1 of 5)	CpG	478.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	4.10597978604792	3.98420653262723	4.10659338758106	4.14876305459973	4.15731786197215	4.08080537571669	3.88947467842504	4.39445051543242	0.137155768257261	0.742487607691714	0.898494026733066
Merged-chr4-3626847-4	chr4	3626749	3626949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	-29657.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	7.44087772808754	7.69810189485306	7.37253038425867	7.25280806658743	7.52831723893629	7.49772451130146	7.55934008315757	7.57423369279895	0.126037101667006	0.495484695970584	0.765798957191344
Merged-chr3-88336344-4	chr3	88336263	88336463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178246, exon 1 of 22)	5' UTR (NM_178246, exon 1 of 22)	103.0	NM_178246	229512.0	Mm.439830	NM_173188	ENSMUSG00000001415	Smg5	BC024683|mKIAA1089	Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	6.91118350218438	7.39738195751966	7.48092369673768	6.87179914483839	6.928193297025	7.28150401385953	6.97028963371357	7.35604977209483	-0.0612571278637498	0.794147210892243	0.920373908268052
Merged-chr6-125684797-4	chr6	125684703	125684903	+	817.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 50 of 51)	intron (NM_011708, intron 50 of 51)	-5616.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	4.17099052265945	4.37935772596583	3.97787931447096	4.13968827897841	4.23963314616552	3.93185483778336	4.01245439757319	4.25579114051662	-0.131568242721628	0.753533662201324	0.902798885097597
Merged-chr5-36564759-4	chr5	36564674	36564874	+	949.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	MTEb|LTR|ERVL-MaLR	17623.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	5.22978433605148	4.45544037940744	4.73508935197955	5.37195497272784	4.76938980821969	4.8296595926779	4.82774428357927	4.8476704412241	-0.394207734858266	0.304762669401326	0.617287065201667
Merged-chr1-39911669-3	chr1	39911597	39911797	+	867.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	10784.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	3.29010828879338	3.37932469614777	3.40774044357306	3.25742898617663	3.27531466626919	3.73278270031717	3.2787518857078	3.51318547429759	0.439047590335747	0.402422104925659	0.699908650354484
Merged-chr5-53872152-3	chr5	53872037	53872237	+	805.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144517, intron 13 of 20)	intron (NM_144517, intron 13 of 20)	62510.0	NM_144517	67249.0	Mm.28823	NM_144517	ENSMUSG00000039178	Tbc1d19	2810453K03Rik	TBC1 domain family, member 19	protein-coding	3.91675409909633	3.54579375465008	3.87369797661608	3.96117070985775	3.47938536107097	3.5654141569458	3.76483860864499	3.45101775873623	-0.856219801954158	0.0836622384669056	0.31446345629381
Merged-chr5-130255544-4	chr5	130255440	130255640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023248)	promoter-TSS (NM_023248)	-10.0	NM_023248	66711.0	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	SBDS ribosome maturation factor	protein-coding	7.74682261068219	8.11989671631401	7.50905035918325	7.47904537258693	8.06401905718779	8.07009603017988	8.03423424004301	7.65092870732266	0.298654927555574	0.158351971051414	0.445201946078833
Merged-chr9-21135174-4	chr9	21135062	21135262	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3887.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	4.2411026939025	4.82844247894426	4.68333285456596	3.97626484438579	4.96432921214197	4.47394000615396	4.73287141256401	4.71702044567069	0.586928336244026	0.164332554824913	0.454482920304716
Merged-chr10-45067142-4	chr10	45067042	45067242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011156)	promoter-TSS (NM_011156)	-72.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	7.23131015903306	6.94669974260627	6.93569192496502	7.50118120727338	6.9720618178514	6.97189675211009	7.12035101607771	7.02119272492249	-0.231903482139673	0.2829923588666	0.595192894003656
Merged-chr1-177442682-2	chr1	177442582	177442782	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355099, intron 1 of 1)	CpG	331.0	NM_001355100	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	3.3582993094572	3.30097350637504	3.63092167860357	3.4467829116365	3.46121940629041	3.53247910560191	3.66287857159157	3.4726918997074	0.311934190058224	0.531942749611268	0.787748963171131
Merged-chr10-44676716-4	chr10	44676615	44676815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-217967.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.65277853348994	6.28448142182955	5.96139021687977	5.76072382276527	6.56361522012564	6.37426823474005	6.20477294717228	5.78006209135159	0.102322752791835	0.737608509454959	0.896392006995728
Merged-chr2-162998720-4	chr2	162998625	162998825	+	915.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291154, intron 9 of 12)	intron (NM_001291154, intron 9 of 12)	7310.0	NM_001291152	27219.0	Mm.26462	NM_013731	ENSMUSG00000017868	Sgk2	AI098171|AW146006|Sgkl	serum/glucocorticoid regulated kinase 2	protein-coding	4.04042799071431	4.37910591394331	4.0409922198471	4.29179301622275	4.43474223779369	4.31403936149108	4.25914152934064	4.13872433513854	0.219123093467416	0.58672648941408	0.818855440601026
Merged-chr10-4334468-4	chr10	4334362	4334562	+	989.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031185, intron 2 of 3)	intron (NM_031185, intron 2 of 3)	53013.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	5.75126494036854	5.86755139384816	5.05806558649386	5.84129404107272	4.94668832701957	4.60468982155268	5.20438171988643	5.12625308207881	-1.23850346466786	0.000397042029836429	0.00640694959005377
Merged-chr14-61360378-4	chr14	61360271	61360471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026598)	promoter-TSS (NM_026598)	74.0	NM_026598	68177.0	Mm.22758	NM_026598	ENSMUSG00000021928	Ebpl	5730442K12Rik|EBRP	emopamil binding protein-like	protein-coding	7.17372707343787	6.84091959851825	7.18605351621069	7.33622612589645	6.90718583731269	6.91863782223582	7.21429174712387	7.33635641034802	-0.0673442407616592	0.75467804942454	0.903394260200158
Merged-chr4-132760491-4	chr4	132760397	132760597	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3326.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	6.15753375308187	6.08665276032206	5.82619085225267	6.04220575865561	5.62968840954087	5.79744899064517	5.7483658906543	5.46819825165387	-0.603391643948944	0.017918324672309	0.118819492439937
Merged-chr19-34673718-3	chr19	34673630	34673830	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172838, intron 5 of 6)	intron (NM_172838, intron 5 of 6)	32841.0	NM_008331	15957.0	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	5.00714950358875	4.60698291408966	4.55646698885647	5.0138317639965	3.22036604354758	3.56523554321693	3.50268191929106	3.72661683995738	-4.31744082543767	1.5818486412359e-11	1.38322364170184e-09
Merged-chr7-96151493-2	chr7	96151395	96151595	+	581.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-19749.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	2.82117330269696	2.72788302677941	2.99428890060506	2.9978959998771	2.45587111325385	2.72737292526171	2.61502621553003	2.93760626417717	-0.969937668124586	0.161475371552849	0.450290126219794
Merged-chr2-18677863-3	chr2	18677790	18677990	+	838.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007552, intron 1 of 9)	intron (NM_007552, intron 1 of 9)	872.0	NM_007552	12151.0	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	3.28331637816024	3.63892305046394	3.3459603537246	3.3665629744252	3.35852104985857	3.57790519150682	3.44883443444992	3.71174193745678	0.368916432765108	0.472679041939371	0.750765866162416
Merged-chr19-4113906-4	chr19	4113807	4114007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_075078)	TTS (NR_075078)	7668.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	5.66483052127374	5.60880438242516	5.93071870461923	5.8398779475401	6.02407059377066	5.70258199009283	6.11772636749566	5.68830840541362	0.216549994197717	0.413327346506026	0.70832375579517
Merged-chr5-146231080-4	chr5	146230953	146231153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359990)	promoter-TSS (NM_001359990)	-197.0	NM_001359990	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	7.05772179061621	7.1978924435415	7.28387337216049	7.3251978093337	6.96700542281815	7.17300542506926	7.26785971978712	7.00374308113523	-0.168228037031206	0.380040432854391	0.682517484234312
Merged-chr19-45545147-4	chr19	45545051	45545251	+	896.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	15413.0	NM_001330506	56626.0	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	4.44256185735129	4.29724234319549	4.56711452706994	4.42584673225981	4.54662569596284	4.65856858874525	4.79242252690483	4.35086176599856	0.362975560340618	0.321574849392062	0.633215694929564
Merged-chr4-8854188-4	chr4	8854094	8854294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001277149, exon 29 of 38)	exon (NM_001277149, exon 29 of 38)	102870.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	8.51440543568362	8.47804621794385	8.65782383616391	8.92981721524268	8.66957137549612	8.83123620128369	8.9735005923389	8.81170348437119	0.198523604907831	0.248676725608798	0.559908283044839
Merged-chr4-65496693-3	chr4	65496597	65496797	+	939.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207109, intron 19 of 22)	intron (NM_207109, intron 19 of 22)	-108289.0	NM_053084	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	3.37038534044395	3.20660512403591	3.48097264551219	3.61100325411378	3.32774279981144	3.69634079427619	3.46704587541653	3.18596851512428	-0.0154884856753413	0.97739217337597	0.991888117862217
Merged-chr2-33138685-4	chr2	33138563	33138763	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 16 of 16)	intron (NM_001290570, intron 16 of 16)	-7227.0	NM_001355201	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	4.60850956960169	4.58384357839201	4.92918482178364	4.83098442749952	4.45070820258223	4.36628133595905	4.62738784420653	4.82805589334827	-0.373192536858681	0.305880454159263	0.618354582408469
Merged-chr2-178078432-3	chr2	178078333	178078533	+	878.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162922)	promoter-TSS (NM_001162922)	-8.0	NM_001162922	353208.0	Mm.381194	NM_001162922	ENSMUSG00000078861	Zfp931	2810021G02Rik	zinc finger protein 931	protein-coding	3.84725926749775	4.03692949959919	4.57019681310697	2.54981965474192	3.4209969861489	3.87028512147645	3.72521354846025	3.62498342877152	-0.789840404534427	0.560320406871623	0.804393115014757
Merged-chr2-36230497-4	chr2	36230403	36230603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008969)	promoter-TSS (NM_008969)	77.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	6.22422253758093	6.29143495236118	6.43725930163359	6.51407580491077	5.94642411659347	6.02581821370002	6.19345924301904	6.12086089818044	-0.476007401043031	0.039468376959091	0.200087843435049
Merged-chr1-74438180-4	chr1	74438081	74438281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310662, exon 24 of 24)	3' UTR (NM_001310662, exon 24 of 24)	28797.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	7.72576930493268	7.87275240868449	7.48267097373828	7.58660768937521	7.56901637983762	7.57038604158077	7.70512056853001	7.68154127642016	-0.0555647179767189	0.754036666454318	0.903044989089611
Merged-chr10-4601785-4	chr10	4601623	4601823	+	933.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10266.0	NM_001302532	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	4.99311745235235	4.93830665406291	4.96050407521947	5.50164177681786	4.82873368859193	4.6536907643395	4.59121516440023	4.65269170474005	-0.909327815052512	0.0111749232575048	0.0853637972253631
Merged-chr2-150788903-3	chr2	150788801	150789001	+	897.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 1 of 19)	intron (NM_153781, intron 1 of 19)	2105.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	3.46525129223779	3.40342455489541	4.07981828146779	3.85572676104357	3.64364105826247	3.58146412160109	3.56765063882553	3.46394835377885	-0.515021651080998	0.325333780225824	0.63689686577447
Merged-chr13-20787142-4	chr13	20787025	20787225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6988.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	7.92577644649877	8.46763594015284	8.06779034374705	7.46278625379845	8.00104052365375	8.13284228361611	7.83837968343866	7.46481833538292	-0.18570810395658	0.451960101570001	0.736359368010693
Merged-chr3-108113903-4	chr3	108113857	108114057	+	805.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010306, intron 5 of 8)	intron (NM_010306, intron 5 of 8)	20891.0	NM_008141	14686.0	Mm.439652	NM_008141	ENSMUSG00000009108	Gnat2	AW490837|Gnat-2|Gt-2|Tcalpha	guanine nucleotide binding protein, alpha transducing 2	protein-coding	4.17573514085777	3.80577611493767	3.67441989053124	3.86999687555264	3.33467116682577	3.84957868029737	3.54482450740649	3.87822800535697	-0.682925686378454	0.178961412617016	0.474990468665321
Merged-chr18-4367331-4	chr18	4367228	4367428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040328, intron 2 of 3)	intron (NR_040328, intron 2 of 3)	-8264.0	NM_001361008	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	6.96763924259286	7.1273910968675	7.09133540284153	7.2401984277626	6.87080665926686	6.99606356892786	7.17736187401752	6.69225572275069	-0.241154306848771	0.236402224287702	0.546451268878457
Merged-chr3-28057151-4	chr3	28057066	28057266	+	923.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 12 of 25)	intron (NM_008875, intron 12 of 25)	72995.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	4.65031135263481	4.55368036991224	4.43892263776409	5.03636316920447	4.54052385201734	4.61539162595322	4.80949163000813	4.60836786789821	-0.148893979315571	0.693378421571304	0.875305395019895
Merged-chr8-79225783-4	chr8	79225687	79225887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026315, intron 2 of 5)	MTEa|LTR|ERVL-MaLR	22796.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	6.41171649339915	6.33361424223753	6.89862073233792	7.22765738533084	6.37048774036087	6.5908203572444	6.81239908137066	6.62850984290344	-0.257276255566212	0.347296747693672	0.655421321627958
Merged-chr5-102072239-4	chr5	102072136	102072336	+	948.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2315.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.28213245100707	5.06199657824406	5.2273148110821	5.33186320700774	4.7567217968819	4.60592715923715	4.64084984545851	4.9722490550263	-0.952208016557321	0.00354093420606319	0.0363784685131894
Merged-chr9-72526250-4	chr9	72526151	72526351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045735, intron 1 of 2)	MTC|LTR|ERVL-MaLR	5607.0	NR_045735	75115.0	Mm.280755	NR_045735	ENSMUSG00000096986	4930509E16Rik	-	RIKEN cDNA 4930509E16 gene	ncRNA	5.69240115949637	5.6642754802223	5.51721940568929	5.52313966402296	5.13204388806584	5.24919914839525	5.40630777922201	5.61692347206449	-0.422485087567604	0.13980229087528	0.41578065905212
Merged-chr2-11203552-4	chr2	11203505	11203705	+	916.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	31223.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	4.05776397872162	3.80896231493346	3.90334200030623	4.20878607678473	4.17949047282992	4.08026870681364	4.08835370429418	4.53570740349171	0.551526946680441	0.206686974601901	0.510683565856314
Merged-chr15-97351333-3	chr15	97351231	97351431	+	957.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 3 of 5)	intron (NM_172293, intron 3 of 5)	-104044.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	4.35096835685965	4.0881755390587	4.46611919521191	4.57728783518279	3.63514318212733	3.99712137430654	4.29099039626645	3.81249788216399	-1.13811386615768	0.0135078569458671	0.0975820308078627
Merged-chr2-160175256-3	chr2	160175155	160175355	+	758.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152239.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	3.63671155136426	3.40591378897251	3.35443903692683	3.53850603511569	3.67472859917953	3.53030523574423	3.71865240599294	3.63512842653299	0.486194538216783	0.31505884049542	0.627021430137102
Merged-chr4-9131803-4	chr4	9131714	9131914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-137479.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	7.6597878785103	7.91827558343994	8.18135230218916	8.280507890553	7.73232942148739	7.71054213717357	7.86772796414039	7.77230217586363	-0.348570426008078	0.0708731130600056	0.285461595433349
Merged-chr14-45239211-4	chr14	45239120	45239320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027518, intron 1 of 6)	intron (NM_027518, intron 1 of 6)	19503.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	5.93109360781519	5.79693720578131	6.12538030368729	6.41103355929152	6.10496828087079	6.06147463187908	5.92480713563589	6.08057982455915	-0.0944823947906981	0.718649966149426	0.887629976798039
Merged-chr13-113627304-4	chr13	113627218	113627418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8754.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	5.97536229237105	5.91053271310943	6.39801614519545	6.10997204391857	5.9657301514073	6.17516490539133	6.11509808445645	6.23780802073573	0.0175416759081113	0.943079529977656	0.97939909270739
Merged-chr5-33222166-2	chr5	33222066	33222266	+	864.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-3928.0	NM_133903	100689.0	Mm.34694	NM_133903	ENSMUSG00000037379	Spon2	2310045I24Rik|AI504350|M-spondin|Mindin|Mspondin	spondin 2, extracellular matrix protein	protein-coding	3.02662044572341	2.92355662300147	2.96800739287843	3.23165675914319	2.94488953640748	2.87774242862647	2.69468766178941	3.0816998894922	-0.612087940722747	0.329715180357306	0.641061663435264
Merged-chr18-79590631-4	chr18	79590526	79590726	+	899.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-456269.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	4.17127402190074	4.14537280118057	4.45245991013186	4.37505297601227	4.69681096413207	4.49497573829923	4.7599038054301	4.53095700550028	0.749784175310011	0.0437977200912142	0.213117166965582
Merged-chr3-69633616-4	chr3	69633512	69633712	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34652.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	5.18305972287229	5.30986262608615	5.1529680561271	5.05045512064258	4.8355755835405	5.35638662732655	5.18817840788527	4.51519496727076	-0.317974946490144	0.363178831789928	0.668323659570053
Merged-chr6-110040532-4	chr6	110040458	110040658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-604954.0	NM_001346640	108073.0	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	6.10726565151365	5.70517956148634	5.83235007697817	6.13363546448709	5.78154999045282	5.90961234613285	5.67888991721132	5.72956676912488	-0.308614428639837	0.235718344323833	0.545663379778285
Merged-chr3-95142818-4	chr3	95142744	95142944	+	919.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027206)	promoter-TSS (NM_027206)	-484.0	NM_027206	69769.0	Mm.34368	NM_027206	ENSMUSG00000013707	Tnfaip8l2	1810019A08Rik|AW610835|TIPE2	tumor necrosis factor, alpha-induced protein 8-like 2	protein-coding	4.13246558330342	4.33834867589943	4.18453231914221	4.05052917426293	4.61330081548181	4.54588042426403	4.69212475248093	4.57127943921386	1.02054814673745	0.00561982952572848	0.0517831519986029
Merged-chr5-124478389-4	chr5	124478242	124478442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030259)	promoter-TSS (NM_030259)	-107.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	7.27678522942212	7.40421409317848	6.67623977596831	6.6937483468861	7.39526380601045	7.4444223300761	7.31212504736057	7.19802072612194	0.397692060780438	0.0924038439385756	0.332518362371277
Merged-chr8-85026824-4	chr8	85026705	85026905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026760)	promoter-TSS (NM_026760)	-28.0	NM_026760	68544.0	Mm.196005	NM_026760	ENSMUSG00000041203	Trir	1110002H14Rik|2310036O22Rik|AI854688	telomerase RNA component interacting RNase	protein-coding	7.67134009792607	8.06979481176679	7.68961534535808	7.84246363558893	7.76181370496385	7.96434216644397	7.78745797077328	7.85730841653709	0.0123074356693418	0.944502824947026	0.980072204069348
Merged-chr6-148896190-4	chr6	148896074	148896274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301351)	promoter-TSS (NM_001301351)	63.0	NM_001301351	232560.0	Mm.150568	NM_181541	ENSMUSG00000030309	Caprin2	C1qdc1|Eeg1|rng140	caprin family member 2	protein-coding	7.6563176663121	7.53632756997448	7.61563927881622	7.74010328522635	7.47215142922218	7.71352057315888	7.30330397977027	7.48484027849751	-0.191434393328264	0.286025806011494	0.597615363323773
Merged-chr11-120492246-2	chr11	120492150	120492350	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013770, intron 1 of 10)	CpG	413.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	3.71578535136385	3.9405847785693	4.38632744501199	3.41934533701865	4.08868890102485	3.77757093812203	3.91474379500974	4.0701744168391	0.169545778577961	0.741043317825603	0.898139463026673
Merged-chr3-104758650-4	chr3	104758557	104758757	+	665.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	18890.0	NM_183224	329731.0	Mm.389494	NM_183224	ENSMUSG00000055865	Fam19a3	7530404M11Rik|Sam3|TAFA3|Tafa-3	family with sequence similarity 19, member A3	protein-coding	3.91120943768536	3.979303313567	4.01219765049538	4.36142860099575	4.0456930052028	4.03290429504259	3.84347138864025	4.10282157085783	-0.230711987577858	0.601132734603091	0.827071740947179
Merged-chr4-155144451-3	chr4	155144340	155144540	+	850.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081100, intron 13 of 13)	intron (NM_001081100, intron 13 of 13)	57836.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	4.1466909242229	3.77751540877308	3.64477660270656	3.52045015223376	3.75552603425186	3.97345918784301	3.57398226329012	3.39839352797753	-0.279911013458419	0.590406224986578	0.820919766532264
Merged-chr5-117287659-4	chr5	117287596	117287796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018858)	promoter-TSS (NM_018858)	-132.0	NM_018858	23980.0	Mm.195898	NM_018858	ENSMUSG00000032959	Pebp1	HCNP|Pbp|Pbp1|Pbpr|Rkip	phosphatidylethanolamine binding protein 1	protein-coding	7.67599995859157	7.58540650583012	7.4452592458674	7.40929503794692	7.6873641420719	7.4884645754313	7.67972166019315	7.65566202451526	0.140656744536862	0.419662126692103	0.712744703312269
Merged-chr8-125533935-2	chr8	125533835	125534035	+	707.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	35928.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	3.32329125258275	3.43930669627495	3.8654359440288	3.63220685378597	3.42134892148814	3.84511040271555	3.65962969353761	3.72311109009757	0.258791991097194	0.613190749167031	0.833119630742334
Merged-chr5-139470612-4	chr5	139470517	139470717	+	934.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001159908)	TTS (NM_001159908)	-10083.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	4.82004542313188	4.43594755563374	4.88867332330739	4.67578094876499	4.82210893721569	4.80691325545426	4.52941746371332	4.58940700801025	-0.02432585926919	0.945452111968946	0.980503536399195
Merged-chr7-105691061-4	chr7	105690955	105691155	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	45529.0	NM_025897	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	5.1042877806287	5.32360634052481	5.2967275989514	5.57040062407938	5.12347917128628	4.88883343363364	5.21021681014852	5.43296974150531	-0.315588395122426	0.318088848717614	0.630026050111892
Merged-chr1-191906678-4	chr1	191906572	191906772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009579)	promoter-TSS (NM_009579)	-109.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	8.08376532394744	8.17438503621926	8.2731711447251	8.28385543050613	8.24560366028221	8.05666680138465	8.40700980852757	8.25072483892972	0.0482628089777817	0.765443864231693	0.90824046162812
Merged-chr11-115100678-4	chr11	115100587	115100787	+	833.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	9256.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	3.93865171302553	3.91658041768294	4.33194244251035	3.97838522149652	3.69084547053118	4.29858327830486	3.87128607357534	3.98693585346603	-0.202704223409772	0.658741725460978	0.857995155933081
Merged-chr3-89216022-4	chr3	89215850	89216050	+	946.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_149740)	promoter-TSS (NR_149740)	-638.0	NR_149740	21827.0	Mm.2114	NM_013691	ENSMUSG00000028047	Thbs3	TSP3|Thbs-3	thrombospondin 3	protein-coding	3.5359958554697	3.70339220165206	3.90618573368815	3.50854937113317	3.90971998467402	3.77258035856461	3.39763503822876	4.15221540265362	0.502683543421928	0.321827539824037	0.633307413594735
Merged-chr19-26607362-4	chr19	26607284	26607484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 1 of 32)	CpG	2224.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	6.69945287401263	6.49254881381757	6.47449665831676	6.90397794154948	6.86836397437877	6.84687115722897	6.72401715283623	6.43401384460314	0.0919248301004081	0.688078686354959	0.872614457715549
Merged-chr14-57730514-4	chr14	57730414	57730614	+	872.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153382, intron 1 of 1)	intron (NM_153382, intron 1 of 1)	3904.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	3.77048214735791	3.94918029311697	4.07419459610171	4.08299952737636	4.06350711218688	4.0009356245847	4.14222825288977	3.82460180517337	0.0865365060118979	0.841258397732396	0.939602559151944
Merged-chr5-53818008-4	chr5	53817888	53818088	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144517, intron 1 of 20)	intron (NM_144517, intron 1 of 20)	8361.0	NM_144517	67249.0	Mm.28823	NM_144517	ENSMUSG00000039178	Tbc1d19	2810453K03Rik	TBC1 domain family, member 19	protein-coding	3.92979474869177	4.21360304580143	4.32129637725395	4.22419377758089	4.7009733167576	3.99503350640885	4.07386619506247	4.43891717790569	0.399802202644644	0.36220206145781	0.667422091035142
Merged-chr11-103116172-4	chr11	103116078	103116278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138753)	promoter-TSS (NM_138753)	-147.0	NM_138753	192231.0	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	8.50811641352544	8.50800428797444	8.36032863759176	8.2690819337092	8.55242703406984	8.73497967155805	8.39027068042321	8.42908993582581	0.153864193579016	0.344872159904298	0.653272604871241
Merged-chr15-67782151-4	chr15	67782156	67782356	+	934.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	476600.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	3.92971272482461	4.21328271869839	3.97892902953942	3.33702768128927	3.94796662693271	4.00295985146107	3.86345441372262	4.02326559471252	0.17256361917909	0.731060052124116	0.89342225316245
Merged-chr11-103233121-4	chr11	103233011	103233211	+	899.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 6 of 15)	intron (NM_016896, intron 6 of 15)	-14679.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	4.37314259019585	4.22103129203317	3.95697618961251	4.04450279940822	4.46402878239206	4.2365225339212	3.94134797668258	4.28951109669115	0.254812515190707	0.545218468213653	0.795786194536872
Merged-chr7-100276647-2	chr7	100276548	100276748	+	607.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027629, exon 14 of 14)	3' UTR (NM_027629, exon 14 of 14)	-8872.0	NM_177161	320452.0	Mm.150294	NM_177161	ENSMUSG00000051048	P4ha3	D930031A02Rik	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III	protein-coding	2.74301501388724	2.65919040413204	2.74333256023524	2.64371397734402	2.65185107023426	2.91367827000615	2.79621938737061	2.97619386783001	0.675008226740975	0.281091218529661	0.593157387676698
Merged-chr16-44757361-3	chr16	44757264	44757464	+	722.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-8372.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	3.82417309861868	3.54058599679466	3.82476237295418	3.97992334089033	3.46149045773598	3.44636230472044	3.38592292566933	3.51627775424951	-1.15552925943759	0.0218630546551264	0.135935566675161
Merged-chr2-102998542-4	chr2	102998441	102998641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74972.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	6.72222145694245	6.6118456716698	6.67882429377593	6.74598915179543	6.56156040345067	6.58792173756301	6.75981522851784	6.98091407879521	0.0505613733388456	0.810391316810593	0.92679579587174
Merged-chr9-62955092-4	chr9	62954995	62955195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	MTE2b|LTR|ERVL-MaLR	25784.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	5.90911287184246	6.0535417883333	6.06310155047074	6.34608432547057	5.80587339120693	6.01489947572127	5.88009475323071	5.90595051751232	-0.352256887827652	0.159276769678896	0.446696658352016
Merged-chr12-3873719-6	chr12	3873601	3873801	+	900.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 6 of 22)	intron (NM_007872, intron 6 of 22)	-11457.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	3.68054943058765	3.58560317279638	3.57551071976364	3.52065397259358	3.85524059314622	3.63473378996885	3.56172184125256	3.57358260248409	0.265168309785239	0.577178540337331	0.813924639099529
Merged-chr9-35115576-2	chr9	35115494	35115694	+	733.75	f0_balb.idr|f0_c57.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-1134.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	3.43585836139045	4.08783042480843	3.78520453708745	3.69321215027686	3.67616556409787	3.74046174538622	4.08078878287708	3.67674854315699	0.0918038644237766	0.853447354019576	0.944788460884744
Merged-chr10-21907246-4	chr10	21907116	21907316	+	904.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 1 of 13)	intron (NM_001161845, intron 1 of 13)	25032.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	4.36440432118925	4.63683065626171	4.61627341538377	4.55723073893003	4.8153333627477	4.49414615898498	4.25126225361975	4.49396658184139	-0.0144522327960341	0.969609113096306	0.989034602712618
Merged-chr11-69067063-3	chr11	69066980	69067180	+	919.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3729.0	NM_025838	66910.0	Mm.33964	NM_025838	ENSMUSG00000020895	Tmem107	1110004B13Rik|2810049P21Rik	transmembrane protein 107	protein-coding	4.03956053499328	4.51594295627566	3.75296346760712	3.46461090962879	4.47310008239872	4.16756183903196	4.29864986319327	4.57913780309094	0.948279113035955	0.0564764636230639	0.248897170715501
Merged-chr5-147073142-3	chr5	147073041	147073241	+	950.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	3431.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	3.90097498562553	3.93544277671712	3.72155141204882	4.08399923605476	3.26071373516369	3.30815014032875	3.03398604401366	3.04045555095606	-2.80780501527681	6.75326645206166e-06	0.00019406166846641
Merged-chr11-106008034-4	chr11	106007927	106008127	+	706.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037712)	promoter-TSS (NM_001037712)	-176.0	NM_001037712	192775.0	Mm.343850	NM_001037712	ENSMUSG00000001901	Kcnh6	m-erg2	potassium voltage-gated channel, subfamily H (eag-related), member 6	protein-coding	3.70575808698299	3.41914305653664	3.94023061051962	3.38034636642222	3.76428617534041	3.71746170601272	3.74055279998109	3.59726956800964	0.277947247656933	0.577993849175242	0.814391164493464
Merged-chr15-101981144-2	chr15	101981044	101981244	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23198.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	3.41720817763549	3.50117015920888	3.64057276578686	3.49637629857826	3.67833818334316	3.33487478606746	3.46402130962293	3.99236629014226	0.410049743816475	0.425134858042575	0.716728453911735
Merged-chr3-16210761-4	chr3	16210655	16210855	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172677, intron 5 of 5)	MLT1F2|LTR|ERVL-MaLR	27590.0	NM_172677	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	5.27776383244334	4.92359327467775	5.15923473507331	5.55842127094167	4.64986161092932	4.80625661868992	5.1943610347307	5.12398799801032	-0.587788786541007	0.0935536481246683	0.334609070894214
Merged-chr7-105808537-4	chr7	105808438	105808638	+	812.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025301, exon 3 of 3)	3' UTR (NM_025301, exon 3 of 3)	2549.0	NM_025301	27397.0	Mm.44225	NM_025301	ENSMUSG00000030879	Mrpl17	MRP-L26|Rpml26	mitochondrial ribosomal protein L17	protein-coding	4.4791647768291	5.16109100454531	4.89493962937529	3.73985950745406	4.02850014736552	4.38995486026688	4.28525824902416	3.86642694438827	-1.19300553400415	0.0217240038372325	0.135248217364679
Merged-chr10-22334184-3	chr10	22334094	22334294	+	961.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	L1_Mus1|LINE|L1	27474.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	5.01051680210931	4.91434452472221	4.6651184727421	4.45154911344588	3.33456557772786	3.72683205528643	3.65487162596954	3.5215107439197	-3.73555515168578	9.97373628358213e-11	7.62535526239627e-09
Merged-chr11-75651329-7	chr11	75651239	75651439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008659)	promoter-TSS (NM_008659)	-170.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	5.8149195600457	5.64867774185743	5.95154924643554	5.51316173896484	5.60713115537299	6.16742009734783	5.68771459054666	6.16299318538423	0.314670363894911	0.271494500640199	0.583222139604812
Merged-chr18-12648266-4	chr18	12648150	12648350	+	918.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 1 of 13)	intron (NM_028341, intron 1 of 13)	4717.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	4.08483499015358	4.30822413791484	4.19026264907159	4.21089822533917	4.70187319551631	4.50781434934983	4.82245740011424	4.37516362173331	0.953609505254045	0.0117435186942296	0.0885103681847277
Merged-chr8-120686732-2	chr8	120686632	120686832	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18412.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	3.83383646351623	3.73193378326442	3.78228499500485	3.90044117582103	3.9992295700277	4.19162299576086	3.33711537489948	3.97665380859233	0.272379596358949	0.589493887757791	0.820464677958613
Merged-chr4-138973235-1	chr4	138973135	138973335	+	1000.0	f0_balb.idr	5' UTR (NM_029857, exon 1 of 17)	5' UTR (NM_029857, exon 1 of 17)	330.0	NM_029857	77056.0	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	4.7735163531143	5.04380420478366	4.81154931416462	4.64425502114277	4.89440907037051	4.98336239225991	4.5935827086739	4.73287268071791	-0.0135368895790829	0.968678271961753	0.988762939668968
Merged-chr1-191194269-4	chr1	191194163	191194363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10930.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	6.28527199388835	6.41269353638914	5.52854771711477	6.2783711322447	6.36661068765101	6.22057765328121	6.51756837829002	6.24449849152887	0.251063282062871	0.356399213255318	0.662855415335378
Merged-chr16-91045738-2	chr16	91045638	91045838	+	984.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1359.0	NR_152264	67367.0	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	3.04989320911822	3.2507549427783	3.11270223529047	3.04295532451749	3.07910658986189	3.15998314551831	3.37152616581136	3.1706534454782	0.324203201716759	0.557879187624787	0.802921439177142
Merged-chr6-47979145-4	chr6	47979050	47979250	+	969.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25760.0	NM_178898	101197.0	Mm.241063	NM_178898	ENSMUSG00000045466	Zfp956	AI894139	zinc finger protein 956	protein-coding	5.58687375051923	5.30152986459386	5.2797317292717	5.42980332785441	4.90596285300407	4.9689389460741	4.96205941174823	4.74201084233398	-0.964468454497113	0.00174547162603276	0.0210502621382935
Merged-chr6-17481229-4	chr6	17481106	17481306	+	859.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008591, intron 1 of 21)	intron (NM_008591, intron 1 of 21)	17249.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	4.23926793048997	3.85679314034183	4.49926276145635	3.99493847886138	3.86605668865767	3.92450710327346	3.84370291482977	4.10738480024267	-0.596410125953281	0.189389614996361	0.488251009184518
Merged-chr9-20690697-4	chr9	20690599	20690799	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357639, intron 1 of 5)	L1_Mus1|LINE|L1	36304.0	NM_001357635	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	4.41304613612724	5.13332585132671	4.90137212662872	4.89785102148834	4.90573973904114	4.70101919653905	5.58815475181034	5.30651085694682	0.585007816539703	0.131453309322461	0.403700467663439
Merged-chr15-73435062-4	chr15	73434976	73435176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11885.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	7.26475884761378	7.49376819370531	7.17582100517215	7.33265870256822	7.30095084841623	7.5066795767699	7.61796190694071	7.23900592576547	0.129044882634878	0.498729517192359	0.767796437855194
Merged-chr18-34118147-4	chr18	34118050	34118250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102834.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	5.92279649976799	5.8678223417922	5.54698489541209	5.66498874647318	5.9517456598216	5.83510098860817	5.99709941406118	5.65491816405744	0.190237042347361	0.463860898492775	0.745045824634848
Merged-chr11-69763681-1	chr11	69763581	69763781	+	790.0	f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1837.0	NM_019871	56293.0	Mm.6211	NM_019871	ENSMUSG00000018776	Slc35g3	Amac1	solute carrier family 35, member G3	protein-coding	2.7263973228301	2.88178908021103	2.79650393412458	2.68927670122511	3.11630044586105	3.09660206654502	2.97503549047668	3.04233375445176	1.27629475060497	0.0304960378976626	0.169042713302525
Merged-chr5-44226616-4	chr5	44226485	44226685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173764)	promoter-TSS (NM_173764)	21.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	6.49048584538154	5.99566310497503	6.47642390337628	6.03600253370536	6.18562964971883	5.90264149639755	6.22736725618914	5.54073453890706	-0.402205649761318	0.157708011758255	0.444363018325581
Merged-chr4-135241873-4	chr4	135241774	135241974	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	30886.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	4.42356791251809	3.89589559780879	3.7399560271826	4.10930592683863	4.44186661900492	4.03155159546004	3.89303608205121	3.73803745703499	-0.00659899686923442	0.989287433799738	0.995680733682901
Merged-chr3-135192083-4	chr3	135191975	135192175	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20488.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	5.14869134603404	4.94531579343209	5.30924894432576	6.12162363917152	4.8319285309604	4.89650823219913	5.25238746128714	5.64529884941558	-0.505959345253542	0.220918684565152	0.52902341133927
Merged-chr19-10795190-4	chr19	10795098	10795298	+	871.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009852, intron 6 of 12)	intron (NM_009852, intron 6 of 12)	34860.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	4.55108178123063	4.41013325817089	4.51609530493035	4.17576380674273	4.08409493176538	3.99198301771054	4.34158778022577	3.80554198461199	-0.849604301564956	0.0488321081471604	0.228403452347848
Merged-chr3-104818596-4	chr3	104818495	104818695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008619)	promoter-TSS (NM_008619)	-32.0	NM_001163440	17454.0	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	5.4879038597193	5.33385446616127	5.59416661286316	5.76492382090338	5.5656948012049	5.17440008441341	5.43383290780235	5.42886358046806	-0.263783374255705	0.364506783034714	0.669279814395716
Merged-chr2-169958927-4	chr2	169958826	169959026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	4261.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	7.14310829376414	6.564425148493	7.36536674288598	7.09433230599268	6.59830926224064	6.43671443524578	7.14080101451958	7.08314011349281	-0.310004980483692	0.238627198562851	0.548972916561797
Merged-chr10-82859179-4	chr10	82859081	82859281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015762)	promoter-TSS (NM_015762)	-25.0	NM_001042513	50493.0	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	8.65943171197461	8.83874243950748	8.74253638249023	8.33365443761845	8.79497316242125	8.79799302288498	8.75177641994944	8.71600469247048	0.144182686490293	0.389137107953562	0.689374802932542
Merged-chr12-16847453-4	chr12	16847348	16847548	+	809.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	36483.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	3.9905530694831	4.04447789315183	4.04035301743738	4.18826530600917	4.02281170071326	4.06165826758471	4.20113240629384	4.0853094538652	0.0345322416994511	0.93287879910418	0.975805604924077
Merged-chr15-12236891-2	chr15	12236791	12236991	+	661.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172958, intron 5 of 15)	MTA_Mm|LTR|ERVL-MaLR	31863.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	3.44158638170931	3.30350298159618	3.03581228382858	3.05763814278264	3.01986278059434	3.39745789477167	3.37688623895911	3.16369939216151	0.109688589074721	0.848063399451972	0.942612651933043
Merged-chr9-95954787-4	chr9	95954673	95954873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011916)	promoter-TSS (NM_011916)	13.0	NM_011916	24127.0	Mm.291179	NM_011916	ENSMUSG00000032410	Xrn1	Dhm2|exo|mXrn1	5'-3' exoribonuclease 1	protein-coding	7.08901135364455	7.12629452659063	6.8390738041295	6.82742952065854	7.23138541887932	7.38132398276393	7.302734076193	7.33420131801643	0.464935042615312	0.0143686374247582	0.101773372803418
Merged-chr12-84222823-4	chr12	84222741	84222941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3960.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	5.89570844376301	5.44749363609733	5.25127730786588	5.86557280696381	5.83955276253694	5.49804519585577	5.7107974374331	5.584056898014	0.0267210624853434	0.928354093364831	0.973969592850704
Merged-chr7-142356286-3	chr7	142356191	142356391	+	793.955566	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347541, intron 2 of 2)	intron (NM_001347541, intron 2 of 2)	15968.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	3.31413843603697	2.89887648216474	3.04923154485315	3.35463971475766	3.20495425378961	3.89160245452513	3.79094201295283	3.25121340780789	1.3375179473555	0.0322793432809508	0.175872607985137
Merged-chr11-19830817-4	chr11	19830724	19830924	+	786.325012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93618.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	4.53487394315802	4.26809638670882	3.95162990416962	4.33913548536733	4.29334424421305	4.42605328729393	4.23550348015903	4.10925255932995	-0.0535452317933023	0.895609458659716	0.960922893202393
Merged-chr2-59316723-3	chr2	59316628	59316828	+	898.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 9 of 20)	intron (NM_175464, intron 9 of 20)	69954.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	4.17282608083608	4.16352346517027	4.38613468782084	4.53481672499155	3.97016075480165	4.14937695738766	3.90622212787798	4.4214791743466	-0.540804248106731	0.207695210388755	0.511718150926314
Merged-chr10-42860276-4	chr10	42860155	42860355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172938)	promoter-TSS (NM_172938)	-257.0	NM_172938	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	6.82814767520714	6.88400032007633	6.81616833851581	6.65142874649989	6.67337264108802	6.5350689172846	6.18441393709908	6.25362865516684	-0.511506335458101	0.0243209599730956	0.145743526681678
Merged-chr9-78532233-4	chr9	78532108	78532308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50484.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	5.95843067216371	6.07846621490982	6.04757775244699	6.09017290387542	6.32764536693371	6.41809845435937	5.90622171759375	5.70418956917824	0.123844002224986	0.640414328027943	0.848170055349452
Merged-chr13-88823757-3	chr13	88823632	88823832	+	903.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037987, intron 1 of 10)	(CA)n|Simple_repeat|Simple_repeat	2260.0	NM_001037987	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	3.25793477318769	3.1626756138214	4.13713240384052	3.14136675809841	3.85293049725477	3.70371214888643	4.03969147857761	3.79227470991811	1.05356497367412	0.0795505677586381	0.305428009196402
Merged-chr16-87695524-3	chr16	87695419	87695619	+	756.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3435.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	3.56292619560965	3.4901696332046	3.67429455973391	3.78156780340418	3.50195557988522	3.79285894016011	4.02175530977821	3.67222442828593	0.347962925305996	0.47863201961509	0.754613784397247
Merged-chr9-103364922-4	chr9	103364832	103365032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134427)	promoter-TSS (NM_001134427)	47.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	6.04361250427342	6.19507766957467	6.11207181084928	6.23359354228799	6.4980421397343	6.67941802381383	6.85269091926216	6.29067567937652	0.649290444926787	0.0055288754185831	0.0511622235334537
Merged-chr7-45051080-3	chr7	45050994	45051194	+	701.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175022, intron 2 of 13)	intron (NM_175022, intron 2 of 13)	1787.0	NM_175022	233210.0	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	3.37189722824724	3.14181055871754	3.1877725551507	2.88630757788242	3.45382022326946	3.70451744674501	3.74718032865997	3.25048123690371	1.4470419424935	0.00967014496568912	0.0770800576117666
Merged-chr2-116952913-4	chr2	116952814	116953014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	52762.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	4.92779724558556	5.17178938322296	5.02815031977887	4.00410101394251	5.18725753331057	5.06839055466105	4.90430143724172	4.32326512676337	0.109293830107794	0.810433525277738	0.926814284727818
Merged-chr2-91183307-4	chr2	91183211	91183411	+	950.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145527)	promoter-TSS (NM_145527)	-264.0	NM_145527	228355.0	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	4.82875362427766	4.79831854324003	4.7172465333672	4.67944018039566	4.59836525503323	4.5902784472663	5.03305104207416	4.96188469528816	0.113909395272476	0.741781083896347	0.898388354542756
Merged-chr10-98676945-3	chr10	98676815	98677015	+	838.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-237727.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	3.24243480353933	3.36176348415078	3.50495622130276	3.23464432227985	3.11032879331477	3.29482475486852	3.11057589870795	3.11948559020088	-0.676773278039005	0.219598404570212	0.527217019204017
Merged-chr2-113453679-4	chr2	113453536	113453736	+	917.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 2 of 16)	ORR1E|LTR|ERVL-MaLR	12572.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	4.25259677247413	4.22467262959154	4.49168765248502	4.01717160529245	4.20825881765672	4.3805841854165	4.09724659017378	3.90189264668337	-0.21708292685647	0.609305240249846	0.830965237885955
Merged-chr17-17394500-4	chr17	17394409	17394609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025934, exon 10 of 10)	3' UTR (NM_025934, exon 10 of 10)	-8177.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	6.53313979801486	6.61903244433794	6.67675790139859	6.93137177626369	6.78915241425761	6.43276821142266	6.8097974365746	6.42490583567906	-0.110511013728693	0.628403583682576	0.84151672874423
Merged-chr2-181319745-4	chr2	181319655	181319855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166665)	promoter-TSS (NM_001166665)	31.0	NM_001001882	269400.0	Mm.11333	NM_001001882	ENSMUSG00000038685	Rtel1	AI451565|AW540478|Rtel	regulator of telomere elongation helicase 1	protein-coding	5.86320957957977	5.44151926894444	5.47910830735724	5.49681399508493	5.69693444835012	5.40918521834219	5.39449729460564	5.32615098811451	-0.167855859989881	0.560990598159615	0.804831573486766
Merged-chr4-41304520-3	chr4	41304426	41304626	+	935.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026893, intron 2 of 8)	intron (NM_026893, intron 2 of 8)	10375.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	4.17649476476865	3.48059122523681	3.53923918736951	4.27873312586526	3.7388808190342	3.7791472847613	3.75574099679872	3.87083663805953	-0.405094675117531	0.442218371140621	0.728997671022703
Merged-chr3-130059781-2	chr3	130059681	130059881	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207209, intron 1 of 23)	intron (NM_207209, intron 1 of 23)	1126.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	3.10076378569952	2.94417141810042	3.21150612645136	2.98333019316796	3.19417441174758	2.95278810780062	2.90663045759583	3.20968488149551	0.0796112351431514	0.891856507861125	0.95952862608333
Merged-chr4-141860700-4	chr4	141860608	141860808	+	759.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 2 of 3)	intron (NM_025994, intron 2 of 3)	14212.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	3.86444061825281	3.98532651717264	4.0043766160503	3.82856530182423	3.61304462207995	3.88304558874952	3.38821226922658	3.95714049615853	-0.569287531227761	0.238213096264786	0.548620743347101
Merged-chr12-41024022-4	chr12	41023948	41024148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053122)	promoter-TSS (NM_053122)	-42.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	8.38225087620339	8.5182591494599	8.21049736218102	8.65647826810611	8.65076479437078	8.50624630974656	8.73786038686982	8.35091680759845	0.140864370960005	0.422747010203638	0.714896520379291
Merged-chr9-99212859-4	chr9	99212732	99212932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	24407.0	NM_001244762	623459.0	Mm.260891	NM_001244762	ENSMUSG00000096316	Faiml	EG623459|Gm6432	Fas apoptotic inhibitory molecule like	protein-coding	6.94162523053866	7.01615796651713	6.83525609482396	6.72274471174609	7.03139301533935	6.98377649717073	6.81448262982366	7.10637773085548	0.1600843663205	0.420861196927379	0.713588262204841
Merged-chr7-48750043-4	chr7	48749861	48750061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39042.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	4.68318109685076	4.96553127113348	5.44044262522035	4.97483355160194	4.67565046665833	4.81995020636507	4.82254483269219	5.17450678110174	-0.314305047741989	0.38225678206268	0.684346251223104
Merged-chr10-89453259-1	chr10	89453159	89453359	+	792.333313	f0_balb.idr	TTS (NM_001163504)	TTS (NM_001163504)	-9292.0	NM_001033331	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	3.68656640275269	3.45409907969289	3.87524354568087	3.76495060156476	3.61579612281038	3.51893260706089	3.45400513155239	3.68496451132155	-0.415257218440928	0.397139199200182	0.695612493933522
Merged-chr11-86955885-3	chr11	86955778	86955978	+	984.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005341, intron 2 of 4)	intron (NM_001005341, intron 2 of 4)	37884.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	3.78653554556914	3.40903345693882	3.48713952424372	3.98111154573749	2.99667771453737	3.13376630445557	3.47338740235538	3.73945314790782	-1.06739965007987	0.0836262964074301	0.31441137502559
Merged-chr6-106458879-1	chr6	106458779	106458979	+	814.666687	f0_balb.idr	intron (NM_001109749, intron 8 of 25)	intron (NM_001109749, intron 8 of 25)	290158.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	3.41075729427987	3.31734989624457	3.30851653370286	3.47837000933538	2.9191649135609	2.89731116839078	3.29498924175393	2.86585715752581	-1.54294819807887	0.0121278727615538	0.0906203921157507
Merged-chr2-18798928-4	chr2	18798845	18799045	+	992.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_131254)	TTS (NR_131254)	2873.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	4.68003228381529	4.72177898721206	4.35156260936208	5.04721535467775	5.10139407149147	5.1483189640681	5.0165290841019	4.79687015579645	0.549558670399018	0.1342214072027	0.407843993309753
Merged-chr16-92021819-4	chr16	92021736	92021936	+	994.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-36486.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	5.06261615761409	5.31443887452494	4.88434618763719	5.09897065170321	5.23554674685188	5.13326010691691	5.07180373624954	4.91882649646547	-0.00339647597507186	0.991355185458277	0.996745793587504
Merged-chr2-180257289-4	chr2	180257189	180257389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025587)	promoter-TSS (NM_025587)	-90.0	NM_025587	66481.0	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	8.97552485377512	8.89025506241552	8.64040658220808	8.64233081789824	8.77967527745057	9.03339297745178	8.87582798562143	8.76157076088786	0.0905020002286623	0.576214713882454	0.813446739194192
Merged-chr7-126655903-4	chr7	126655799	126655999	+	904.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029339, intron 1 of 9)	ORR1B1|LTR|ERVL-MaLR	6590.0	NM_029339	75565.0	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	4.475676024749	4.7895453246076	4.47639093510876	4.84722059086037	4.2623206060437	3.92251903931673	4.41474160601671	4.20285057131366	-1.06211725431566	0.00878455752485496	0.0718873327272536
Merged-chr8-117285236-4	chr8	117285132	117285332	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	28213.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.50544552803866	4.53132952644546	3.94088368899986	4.56429423959407	4.49473567614786	4.17828226261589	4.23563302758405	4.29704835557458	-0.245311693439033	0.556584919605777	0.802155922154042
Merged-chr4-129791200-3	chr4	129791092	129791292	+	952.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29287.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	3.85214083923601	3.69264917077125	3.55924884902401	3.85702603756859	3.47937666167538	3.43121907688164	3.43210397193629	3.50120732312095	-0.946071823285705	0.0557113140161843	0.247030532805481
Merged-chr9-4443096-4	chr9	4443014	4443214	+	955.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113180, intron 14 of 16)	B2_Mm2|SINE|B2	66562.0	NM_145609	78100.0	Mm.206549	NM_145609	ENSMUSG00000041124	Msantd4	8430410K20Rik|Mysantd4	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding	4.66019736759788	5.0709422742698	4.57633879481328	4.67719096893257	4.96252891086515	4.66267695195122	5.05404494886564	4.88443373536081	0.291900994470108	0.401018246127956	0.698787645445108
Merged-chr8-61607750-4	chr8	61607605	61607805	+	870.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-16536.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	3.62399390519467	3.44385722587606	3.39407043507269	3.6823508210598	3.82874003433319	3.6867668117508	3.50132106107992	3.77146099923445	0.482535516207733	0.324891321727951	0.636433272492125
Merged-chr10-60260774-4	chr10	60260662	60260862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16866.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	7.59042370796222	7.26154605561285	7.55745863883718	7.59668980138314	7.29613054060062	7.17578797388399	7.50280637505303	7.26032352901196	-0.261551302513044	0.164763965593572	0.455021894427907
Merged-chr10-67043364-4	chr10	67043232	67043432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	38257.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	5.9461713265213	5.70389813708134	5.21045589570242	5.81457328859639	5.85598140025453	5.76666331499055	5.69215464953343	5.66661467859029	0.0763368191871438	0.787643203870358	0.917636852222575
Merged-chr3-145938522-3	chr3	145938418	145938618	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025555, intron 1 of 2)	CpG	504.0	NR_151446	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	5.03610430846831	5.32590064484816	5.32843833918353	5.22790231828883	5.18887221909428	5.31660504126803	5.46333667509782	5.10422603320739	0.0657610331835304	0.824399961448981	0.932656751847307
Merged-chr19-37957395-4	chr19	37957283	37957483	+	934.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 21 of 53)	L1MC4|LINE|L1	86194.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	5.22047229880194	5.25864706303968	5.61208630776168	5.52281712251663	4.84816594452624	4.69322904064762	5.13323309642671	4.90817530596052	-0.972635382231152	0.00238465866581471	0.0267513978209653
Merged-chr3-9751670-4	chr3	9751568	9751768	+	900.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	82011.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.86870477094632	4.16766792521799	4.96578373394492	5.19860304729429	4.27615207659911	4.47146582154249	4.70584889094278	4.60843087838086	-0.727454670173357	0.085051670216028	0.31740642973348
Merged-chr15-66729110-4	chr15	66729007	66729207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 26 of 47)	intron (NM_009375, intron 26 of 47)	58337.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	5.72122347441358	6.22353324299953	6.37870738328115	6.36728047666278	6.24378947148758	5.87383481631769	5.87289896806824	6.13904890993615	-0.241850109328539	0.367608901641841	0.672078545448965
Merged-chr8-122928979-4	chr8	122928880	122929080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	80606.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	6.42738808774472	5.79296707314779	5.63002417418737	6.02699423845281	5.98991032688992	6.13090074669748	5.76134667206027	5.76123250788093	-0.131934404723509	0.642997272944649	0.849459897971419
Merged-chr3-40523491-4	chr3	40523382	40523582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040445)	promoter-TSS (NR_040445)	-570.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	5.58865822535688	5.79348279843316	5.44474110176975	5.72055295066437	5.8646541755896	5.62211122539195	5.76240526764143	5.83354043553056	0.208152545592725	0.425031003118118	0.716641115147179
Merged-chr15-75616488-4	chr15	75616323	75616523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011759)	promoter-TSS (NM_011759)	-261.0	NM_001044718	22701.0	Mm.87210	NM_011759	ENSMUSG00000047003	Zfp41	CTfin92|Zfp-41	zinc finger protein 41	protein-coding	7.61310500114186	7.63148233741708	7.30601938397685	7.66380715114504	7.26958281154118	7.6179593347106	7.82345360966803	7.55687235439598	0.0120290321837955	0.951770397385952	0.982835405595506
Merged-chr4-131921192-3	chr4	131921078	131921278	+	992.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201367)	promoter-TSS (NM_001201367)	-593.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	4.15602634796497	4.42316008497997	4.31678281748735	3.95591335018439	3.7697422985668	3.69357839195365	3.74538549454282	3.75777353738522	-1.33211264169921	0.00400878675014748	0.0401380548725203
Merged-chr12-85467148-4	chr12	85467064	85467264	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6726.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	5.29125859752271	5.07639182610021	5.97728465293915	5.91095034999716	5.01156163960401	4.94439557604082	5.6169604134612	5.08525658817752	-0.76642191812018	0.0376563636945008	0.193960656444813
Merged-chr16-30972103-4	chr16	30972027	30972227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	109305.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	5.92750259518635	5.96415306967545	6.2248270971071	5.94010084299816	5.82807914735629	5.65723355445584	5.806089924031	6.07194001763732	-0.261859983739867	0.300025832563836	0.612239865143238
Merged-chr9-123539289-4	chr9	123539172	123539372	+	910.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357485, intron 1 of 19)	intron (NM_001357485, intron 1 of 19)	9519.0	NM_030692	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	3.9452168743887	4.1399872496307	3.88969134954494	3.93851757031078	4.4916879706581	4.45302090933966	4.2633393969156	4.28020064879721	0.998967785444748	0.0118987482759035	0.0893397683049087
Merged-chr5-92348941-4	chr5	92348802	92349002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021274)	promoter-TSS (NM_021274)	-13.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	7.40124077038697	7.90618789263747	7.27722118309997	6.9560983100682	7.60006453747682	7.94714032623445	7.47924192797749	7.04419128585855	0.169542135518541	0.524985182189618	0.783197524376987
Merged-chr10-19063572-4	chr10	19063486	19063686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-48176.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	6.03715635870549	5.87470328647336	5.41038227726606	5.19307904039021	5.86183624848851	6.2116169855099	5.86116432496573	5.77080748103836	0.447488437946081	0.150366856809404	0.433002771293654
Merged-chr5-135613053-4	chr5	135612941	135613141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19613.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	7.53106753754577	7.39871683094258	8.1478328974602	7.91307428218884	6.96343737645413	7.02260877992364	6.92439497713206	7.08689429664014	-1.05319566871097	1.78932343247522e-06	5.91825299214883e-05
Merged-chr5-136087038-4	chr5	136086887	136087087	+	842.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039103, intron 1 of 19)	PB1D7|SINE|Alu	3071.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	3.65297075785691	3.96669436963066	3.5375097556356	3.55369402203956	3.81336194652967	4.02691791579609	3.5247672279775	3.80788637704066	0.348423146940486	0.473263721050022	0.751076459932416
Merged-chr1-159232206-4	chr1	159232106	159232306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360878)	promoter-TSS (NM_001360878)	6.0	NM_011931	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	7.84924102894479	7.48353420097773	7.7615498419525	7.76830250451682	7.66711769091581	7.42353310704091	7.61991804546472	7.47282775888383	-0.220835474450163	0.219754589977973	0.527382337133262
Merged-chr8-83737525-3	chr8	83737385	83737585	+	699.43335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	B3|SINE|B2	3826.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	3.42684470718507	3.33781446730185	2.99883191076248	2.79551591116143	3.45580138100067	3.31358083945199	3.41269377036977	3.42530171525464	0.899843554638962	0.127545431459691	0.397369460390093
Merged-chr6-136835648-3	chr6	136835581	136835781	+	773.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039558)	promoter-TSS (NM_001039558)	-231.0	NM_001039558	654818.0	Mm.386899	NM_001039558	ENSMUSG00000043298	Smco3	C030030A07Rik	single-pass membrane protein with coiled-coil domains 3	protein-coding	4.36002286351622	4.6296386379364	4.28402878087498	4.36356384016009	3.44311019950427	3.68587597775812	3.61618324469618	3.41920297963581	-2.68022802647586	1.56983812313542e-07	6.47015099980638e-06
Merged-chr1-7397055-4	chr1	7396967	7397167	+	993.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	308147.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	4.89743676147435	5.19855436158902	4.81844340260521	5.13820542745001	5.45187964263859	5.07510844394936	5.21049333337868	5.17208739516161	0.392360673292142	0.214358080764279	0.52012250999559
Merged-chr13-22041365-4	chr13	22041273	22041473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175656)	promoter-TSS (NM_175656)	-11.0	NM_175656	319158.0	Mm.14775	NM_175656	ENSMUSG00000060639	Hist1h4i	-	histone cluster 1, H4i	protein-coding	7.321099485765	7.15988395883077	6.98485730690473	7.25149650472636	7.20294310275833	7.56810003944108	7.63054305449853	7.28609727352043	0.324760583413657	0.103626600341839	0.353715905899955
Merged-chr11-116626566-4	chr11	116626457	116626657	+	864.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	462.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	4.37967827918733	4.27948177557131	4.82896364987147	4.69412931030894	4.40602938684548	4.2055053292233	4.44672193040559	4.58399309678186	-0.343929732774987	0.380433953402445	0.682879617925874
Merged-chr12-111592646-4	chr12	111592530	111592730	+	971.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022801, exon 2 of 16)	exon (NM_022801, exon 2 of 16)	18120.0	NM_022801	17169.0	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	5.00731988842012	5.18342224206249	4.61268435728834	4.6463554302495	4.6188338115789	5.08321018504098	4.50519514883767	4.22201411665294	-0.49817008208344	0.220542318805395	0.52848039692463
Merged-chr1-38049853-3	chr1	38049769	38049969	+	677.477783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 21 of 23)	intron (NM_198303, intron 21 of 23)	51859.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	3.17233093107512	3.1219971033802	3.17271511388163	3.33882193069031	3.16766638040444	3.2204414041039	3.27546526747129	3.39217154961743	0.187045707758427	0.730226474001202	0.893000516342052
Merged-chr3-82799897-3	chr3	82799808	82800008	+	830.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76575.0	NM_001277170	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	3.86816636956873	3.71460499436591	3.66549583708947	4.06626296742574	3.47833816972916	3.60484073192734	3.70450040219387	3.9124326025624	-0.510895632431272	0.295399330214699	0.607379595804165
Merged-chr4-155162901-4	chr4	155162769	155162969	+	976.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	59666.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	5.88114840169339	5.82990447544154	5.88219884241889	5.20075800797417	5.5149698012261	5.62043993509166	5.16229105756742	4.90978941292421	-0.657902046362745	0.0548995099343662	0.244769561525101
Merged-chr10-117376501-4	chr10	117376392	117376592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013391, intron 1 of 9)	CpG	481.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	6.10508904251499	6.13815453503811	6.18950874094514	5.91866388527618	6.50194059578772	6.4435527674708	6.44353319187982	6.53461630971879	0.612016754357029	0.00549600281793351	0.0509421928063951
Merged-chr1-139007709-4	chr1	139007617	139007817	+	743.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	30060.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	4.14412421997155	4.0163004149385	4.31351762403452	4.28722873832962	4.032319574728	4.2232663458468	4.03395055680282	3.71996610599214	-0.485543311824948	0.259927970315105	0.571697947694309
Merged-chr4-139198240-4	chr4	139198142	139198342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	4131.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	6.7079525471758	6.51614926293144	6.75364474411877	7.23525142815123	6.80683212565355	6.79235591321361	6.88234424032538	6.73418864271143	-0.0659336584077241	0.780359436242315	0.914468274591605
Merged-chr19-6364528-4	chr19	6364391	6364591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360393, intron 1 of 11)	CpG	801.0	NR_122118	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	5.85824806531692	6.40025528055718	5.72423644772562	5.60207189446467	6.43810374180912	6.74309872785811	6.06180828332145	6.70223794707481	0.880031212831991	0.00265638640197839	0.0290667067957601
Merged-chr10-96328662-4	chr10	96328549	96328749	+	985.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	102442.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	5.87158140963882	5.552897291451	5.93731863375335	5.8180304210888	5.76995015145782	5.32975636046234	5.88587484115047	5.7031988095518	-0.173947359120931	0.526219854825493	0.783568247232079
Merged-chr10-117841124-3	chr10	117841029	117841229	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	4845.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	3.49942918744112	3.27354356986725	3.59760718320642	3.44158721635305	3.4429728404585	3.19347413470536	3.32525222496665	3.21530606959577	-0.532124489070582	0.319254782944665	0.631106068131706
Merged-chr4-63402522-8	chr4	63402375	63402575	+	993.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 1 of 21)	intron (NM_001045514, intron 1 of 21)	970.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	4.67622597685675	4.7883346227074	4.34342876257545	3.61785637885741	4.98295417520499	4.61229658225601	4.37015101116872	4.59824819809892	0.501118433155247	0.295737114932599	0.60765742950211
Merged-chr15-68269827-2	chr15	68269728	68269928	+	762.366699	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10972.0	NM_198644	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	3.15079857324558	3.46854245108801	3.31705497871812	2.85046485712668	3.05820915856655	3.00056358180089	3.07975651792778	3.08929085382489	-0.60826637759488	0.318221328310994	0.630078053015334
Merged-chr12-85111482-4	chr12	85111397	85111597	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030225, intron 1 of 14)	intron (NM_030225, intron 1 of 14)	664.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	5.1325883504541	5.11102950875308	4.85502620433067	4.77812580402723	5.29214967162411	5.06896751618368	5.19783620325071	4.85183800904655	0.29870333945365	0.358474306661347	0.664423161571961
Merged-chr3-101806343-4	chr3	101806252	101806452	+	970.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29871.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	4.70250050748666	4.59856381405438	4.94492235093706	4.59834546415959	4.59356620011847	4.38227555967088	4.88900080179924	4.73761245206013	-0.0970355911735575	0.78809100822532	0.917943542373917
Merged-chr5-65492957-4	chr5	65492846	65493046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133697)	promoter-TSS (NM_133697)	-111.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	8.29269076086814	8.72715850458038	8.33344466413924	8.19378403106248	8.359211736222	8.46605484209101	8.67309040010336	8.32245002774508	0.0756346592254	0.682752582533203	0.870005658392217
Merged-chr17-26534904-4	chr17	26534785	26534985	+	997.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26413.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	5.52024288774229	5.31212060419156	6.06460925194771	5.78007195043072	4.87499691075882	5.17364031282003	5.57177528150492	5.57053280256921	-0.65291163671808	0.0540534301168968	0.242742530112971
Merged-chr3-108346069-3	chr3	108345935	108346135	+	932.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019972, intron 13 of 19)	intron (NM_019972, intron 13 of 19)	-18876.0	NM_026831	68753.0	Mm.75201	NM_026831	ENSMUSG00000068745	Mybphl	1110037P11Rik	myosin binding protein H-like	protein-coding	4.02655723635413	4.18771817645387	4.21459204863871	4.57884032431841	4.07987812639708	4.29580342966788	3.959609198216	3.74556531925096	-0.636995763262443	0.158060285848486	0.444930535204605
Merged-chr5-121711063-4	chr5	121710962	121711162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009125)	promoter-TSS (NM_009125)	-547.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	5.5182005036462	5.42398372140441	5.35007929515698	5.43405198482109	5.49572179039411	5.26161043298713	5.29350054634027	5.59163830376959	-0.0164002916329413	0.95309937373257	0.983320469096829
Merged-chr11-101253770-4	chr11	101253682	101253882	+	983.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284414)	promoter-TSS (NM_001284414)	75.0	NM_026776	28084.0	Mm.301020	NM_026776	ENSMUSG00000078656	Vps25	1110020N13Rik|AW107467|D11Wsu68e	vacuolar protein sorting 25	protein-coding	5.07947858127709	5.15333998618805	4.94873729871544	4.87633058419293	5.09316505996381	4.85704309724183	4.65835382829594	4.7987428356422	-0.274428012261921	0.41063847575537	0.706010532990132
Merged-chr11-115743117-4	chr11	115743013	115743213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22320.0	NM_028014	71947.0	Mm.23168	NM_028014	ENSMUSG00000020747	Tmem94	2310067B10Rik|Kiaa0195|mKIAA0195	transmembrane protein 94	protein-coding	5.40064757478287	5.72925214642637	5.60529777416607	5.64653822974414	5.52996905628216	5.61033414785058	5.96462718388917	5.93057580107912	0.265908666610746	0.332895869482725	0.643803697701696
Merged-chr3-116081978-4	chr3	116081914	116082114	+	996.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	47674.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	4.96219583471443	5.00099032014983	5.77078454451853	5.68158746223626	5.00653504096013	5.41664255102294	4.93938258980976	5.268977207615	-0.450237005923221	0.211062113689658	0.515716175112166
Merged-chr7-145001734-2	chr7	145001643	145001843	+	618.25	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-61818.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	2.97670085171547	2.88108790125506	3.09258624229457	3.0015237531204	2.98549930801515	3.02209605588397	2.90556040697683	2.97559784479721	-0.0714280776676845	0.902032338900614	0.963659775325421
Merged-chr13-112987700-4	chr13	112987619	112987819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081062)	promoter-TSS (NM_001081062)	-83.0	NM_001081062	218630.0	Mm.25457	NM_001081062	ENSMUSG00000042417	Ccno	C86987|Ccnu|E130318K11|UDG2|Ung2	cyclin O	protein-coding	6.5622178231839	6.80533096433148	6.64730522055566	7.29390426788837	6.90219345968769	6.72444167397535	7.09166901417773	7.24879347436084	0.175172798521529	0.484759062960168	0.758861319634076
Merged-chr7-127008356-4	chr7	127008247	127008447	+	956.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080638, intron 1 of 14)	intron (NM_080638, intron 1 of 14)	6247.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	5.76394139472442	5.89979952674615	4.94058314107507	5.12341205569366	5.37326969430442	5.67485594828658	5.27230950146538	4.97778137340435	-0.252955555715565	0.49351722570416	0.764268272488663
Merged-chr14-79301599-4	chr14	79301512	79301712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025427)	promoter-TSS (NM_025427)	23.0	NM_025427	66214.0	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	5.25596651530111	6.100835980457	5.95890416608199	5.8738642501808	5.65306826067763	5.32856274265866	5.70313978398718	5.99537851269682	-0.239733189240875	0.441848893622629	0.728675480159522
Merged-chr6-47454560-5	chr6	47454493	47454693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355550)	promoter-TSS (NM_001355550)	-164.0	NM_001355550	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	6.33807242488785	6.50568268664352	6.62908909838593	5.95440956123206	6.09648475871087	6.40209193591807	6.4907743479704	6.22102644506993	-0.090171800565965	0.728812367079705	0.892219366049861
Merged-chr6-124445676-3	chr6	124445574	124445774	+	863.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346656, intron 12 of 17)	intron (NM_001346656, intron 12 of 17)	17070.0	NM_001346656	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	3.45838222323483	3.52717751725847	3.56868679464321	3.69755359006955	3.46928130071383	3.62987053913826	3.44608036575863	3.51303536814541	-0.203594934580742	0.678334623593366	0.868034533256964
Merged-chr7-24441998-4	chr7	24441883	24442083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199013, intron 1 of 2)	intron (NM_199013, intron 1 of 2)	3699.0	NM_199013	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	5.33861453114902	5.392916201704	4.90899090378612	4.9062874789701	5.6200411282183	5.42208894262841	5.90577688384517	5.70392858811653	0.932327185206837	0.00231367956452204	0.026162142279433
Merged-chr8-33928433-4	chr8	33928358	33928558	+	909.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042675, intron 1 of 6)	intron (NM_001042675, intron 1 of 6)	1405.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	4.34292914578981	4.47599820335028	4.13495876518055	4.52875655840834	4.76239924346953	4.81636240431656	4.54416574701965	5.00424051366244	0.8596366603237	0.0216762586168665	0.135033643627686
Merged-chr18-56722935-3	chr18	56722854	56723054	+	856.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010721, intron 1 of 10)	intron (NM_010721, intron 1 of 10)	15141.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	3.59989189761236	3.81022386628977	3.8058391615926	3.41579474683821	3.57594583868288	3.60063334475371	3.53017289082682	3.93811645960793	0.0348769334022711	0.944144872965093	0.979954036466248
Merged-chr8-13666116-3	chr8	13666019	13666219	+	969.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	11468.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	5.07804575048727	4.43958704026842	4.86318330854624	5.40294635354022	4.20903830956122	4.17918665750406	4.69813709519764	4.27470435492704	-1.40432762880842	0.0010134729091539	0.0135827505555763
Merged-chr5-117116130-4	chr5	117115993	117116193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178622)	promoter-TSS (NM_178622)	-100.0	NM_178622	71954.0	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	6.14370494859937	6.56157730371389	6.448865492145	6.08324434968536	6.44795620972555	6.75213179643901	6.11336749073389	6.60255124117088	0.266348114651386	0.293550416902392	0.606027760447106
Merged-chr7-110715817-4	chr7	110715690	110715890	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52416.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	4.50250039624871	4.54505378327033	4.07410582167906	4.39092559584988	4.72121764883876	4.63410325565307	4.56036633561876	4.32692119907369	0.409974502744022	0.28327976848022	0.595360804251864
Merged-chr10-17567994-3	chr10	17567865	17568065	+	699.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-155263.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	3.30502966623417	3.08377084930816	3.68910230769503	3.34488500344014	3.18162162488846	3.02669453777318	3.34659221829411	3.0583200719468	-0.781446954252296	0.18314879390582	0.479983357931603
Merged-chr19-36909943-2	chr19	36909843	36910043	+	697.025024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9656.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	3.08581726483904	3.32930947489328	3.02035672646273	2.92575603245777	3.54661110118556	3.19693581735184	3.30718915487627	3.20707828087652	0.890888245867799	0.115665584267695	0.376329506906353
Merged-chr16-57280369-4	chr16	57280290	57280490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027651, intron 3 of 7)	intron (NM_027651, intron 3 of 7)	12461.0	NM_027651	71027.0	Mm.158563	NM_027651	ENSMUSG00000022753	Tmem30c	4933401B01Rik|4933409A18Rik|Cdc50c	transmembrane protein 30C	protein-coding	6.12360084497954	5.66512630718812	6.26296769713088	6.48629650879957	6.51580548894283	6.05045943955701	6.54213732789765	6.09926754949684	0.222865927037204	0.432656531232688	0.722606861809833
Merged-chr19-28680044-5	chr19	28679928	28680128	+	984.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305671)	promoter-TSS (NM_001305671)	49.0	NM_001305671	226075.0	Mm.223508	NM_175459	ENSMUSG00000052942	Glis3	4833409N03Rik|E330013K21Rik	GLIS family zinc finger 3	protein-coding	4.67330041703328	4.39744264039204	4.90573140525826	4.84986350260818	3.85287498143302	4.32422598667476	4.41462402519826	4.55703060506728	-0.961359194923857	0.0220602050921042	0.136802869685562
Merged-chr5-24908310-4	chr5	24908215	24908415	+	953.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310480, intron 3 of 13)	CpG	194.0	NM_001170556	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	4.67380889186116	4.47199065681162	5.20222355631752	4.26570162262244	4.80914113880278	4.76853630243678	4.8749337206295	5.11510089931648	0.432330154653265	0.274623444487567	0.586395867106146
Merged-chr7-28381189-4	chr7	28381112	28381312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1984.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	9.2069318944366	9.33063951992895	9.24210156425267	9.265457393968	9.26672652382171	9.34188589307997	9.51571020181382	9.21509636695692	0.0941416705939272	0.508916182436043	0.773827521189954
Merged-chr1-65179231-4	chr1	65179136	65179336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010497)	promoter-TSS (NM_010497)	-94.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	7.82757202452346	7.7937112685011	7.84391460361987	7.84120356434541	7.81627625463461	7.87908205861344	7.99889415821619	7.76159802811359	0.0498818796410804	0.756336806205364	0.904248123472918
Merged-chr6-38892251-4	chr6	38892148	38892348	+	960.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16058.0	NM_001294143	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	5.19840294658854	4.74470644029256	5.25902950077489	5.55588008333789	4.65713937278844	5.02820786152206	5.11127720991156	5.28415219458757	-0.380874056877769	0.29386206493246	0.606249142653399
Merged-chr5-114697113-3	chr5	114697013	114697213	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-6178.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	5.93934012872886	5.71656654481654	5.2230646558912	5.94313268102546	3.61527772729179	4.18185447475168	3.80780128004619	4.10373932377324	-4.53442609318085	5.28776985694719e-18	1.35387831168217e-15
Merged-chr11-102297129-4	chr11	102297026	102297226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098837)	promoter-TSS (NM_001098837)	-497.0	NM_001098837	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	8.30850919640805	8.42715927696069	8.19494806621767	7.86689688657996	8.28572062982419	8.45422624815873	8.25434814177483	8.10233220154994	0.090065184391108	0.629656932566412	0.842339368939137
Merged-chr13-98027967-1	chr13	98027867	98028067	+	812.799988	f0_balb.idr	intron (NM_012026, intron 9 of 35)	intron (NM_012026, intron 9 of 35)	178198.0	NM_012026	110596.0	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding	3.51291883499213	3.08442249810035	3.75648049240303	3.10129077094098	2.61965502981911	2.77567081886611	2.65673276135624	2.89342250816801	-3.20571460359368	5.97690697600976e-05	0.00131630650261571
Merged-chr5-100872168-4	chr5	100872071	100872271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172715, intron 3 of 12)	intron (NM_172715, intron 3 of 12)	25942.0	NM_172715	231510.0	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	5.68076413239674	5.9400605588266	5.97716941501863	6.49134405042001	6.6180562575558	6.50754711296856	6.68480671279482	6.55846346145536	0.755060027228453	0.00517006747586158	0.0486966035284308
Merged-chr4-128806892-4	chr4	128806865	128807065	+	938.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081098)	promoter-TSS (NM_001081098)	-853.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	4.07687670776896	4.15310912089354	3.92369916461372	4.25396793492782	4.12824425624761	3.98952366583909	4.19603248461452	4.37458601095211	0.150289438062102	0.717840090466534	0.887191620352087
Merged-chr17-47499170-4	chr17	47499045	47499245	+	850.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356290, intron 2 of 7)	RMER6A|LTR|ERVK	3146.0	NM_001356290	63856.0	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	4.05934492027712	4.54584010952561	4.38332471641803	4.00704194992367	4.31521349473357	4.28715433237957	4.14305678206733	4.42062113058629	0.089238704909082	0.829727551844224	0.934618333601978
Merged-chr8-25040614-4	chr8	25040517	25040717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_031257, exon 12 of 12)	3' UTR (NM_031257, exon 12 of 12)	-1655.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	6.39990609507982	6.55344612241021	6.5957881432099	6.58114748081096	6.14002401501939	6.42885569175271	6.27777498045795	6.26724460113168	-0.393630796548673	0.0701026350213595	0.283395011494002
Merged-chr19-24432216-3	chr19	24432105	24432305	+	917.1555789999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008846, intron 3 of 14)	intron (NM_008846, intron 3 of 14)	45269.0	NM_026520	68034.0	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|Gm9849	family with sequence similarity 122, member A	protein-coding	3.07397292973474	3.34534582801205	3.47620368096592	2.92115562284146	3.60599290625412	3.47407586070229	4.12084124883243	3.87168713045613	1.92236060645462	0.000644167212481183	0.0094382828359815
Merged-chr5-65260267-3	chr5	65260162	65260362	+	891.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001359879)	TTS (NM_001359879)	60566.0	NM_153391	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	3.52427272181313	3.53671386800058	3.57884345288747	3.66678005308109	3.35114675605978	3.32680029588721	3.75793953441645	3.67842891833915	-0.140222018198968	0.782122780311473	0.915237231838361
Merged-chr10-63223273-4	chr10	63223171	63223371	+	934.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19319.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	4.30094356880368	4.17643658868525	4.35075716382699	4.59237541847295	4.99525846697	4.70533816340339	4.90109630824247	4.68601465561881	0.971281994914078	0.00959533847962466	0.0766281384092005
Merged-chr15-96552167-4	chr15	96552073	96552273	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89789.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	4.84708936888516	4.73218993567992	4.81063529556861	4.84976372647496	5.03705687419513	4.86788662455704	5.1442085198331	4.7296629691143	0.294248515648892	0.36656428962537	0.670961492818787
Merged-chr11-109380852-4	chr11	109380741	109380941	+	902.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001359034)	TTS (NM_001359034)	-17187.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	4.15840260103956	4.26675259697609	3.82979425319842	4.28020262844552	4.37594470493479	4.62941255203129	4.14122942612776	4.45803871093004	0.60744403787232	0.144657598143241	0.423797463707514
Merged-chr2-132285912-3	chr2	132285822	132286022	+	783.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291039)	promoter-TSS (NM_001291039)	-17.0	NM_001291039	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	3.42732978444924	3.1979894831878	3.36972256758404	2.97628423226527	3.89219737232082	3.42482644449772	3.75633513617253	3.30731422346551	1.30013903243553	0.0191707696773692	0.12432181257885
Merged-chr11-110271887-4	chr11	110271781	110271981	+	720.325012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_147219, exon 39 of 39)	3' UTR (NM_147219, exon 39 of 39)	-20105.0	NM_001166557	76184.0	Mm.159704	NM_147218	ENSMUSG00000044749	Abca6	6330565N06Rik	ATP-binding cassette, sub-family A (ABC1), member 6	protein-coding	3.9648499970023	3.58839438384506	3.96548616035611	3.48038885797096	3.73676377961416	3.56260437275724	3.81367841167793	3.44449935258911	-0.323201987220074	0.525746887769918	0.783367294725902
Merged-chr4-55327724-3	chr4	55327614	55327814	+	699.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22328.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	3.25828895447434	3.14653443641307	3.65666522816276	3.60514246487844	3.15843392395379	2.96066791740586	2.99319225853003	3.36862143414313	-1.14624402849298	0.059591944577866	0.257353174560607
Merged-chr2-77249943-3	chr2	77249848	77250048	+	677.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	30644.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	3.02497521959397	2.92749906490914	3.24757463028752	3.15704428461658	3.0306666957438	2.86235829419796	2.8891824949425	3.19374824171779	-0.387026454611398	0.518305481297429	0.779459059723581
Merged-chr11-70605311-3	chr11	70605207	70605407	+	814.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 12 of 30)	intron (NM_016713, intron 12 of 30)	-10587.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	3.37186821102711	3.48564665987118	3.1230596095151	3.33987769579155	3.64775289652521	3.36332901711997	3.65886030289784	3.37056419631654	0.63506199604203	0.226052584563333	0.534611320617786
Merged-chr6-120174448-6	chr6	120174342	120174542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-19381.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	6.47886714631797	6.43359682241778	6.793637876804	6.87278929040127	5.03221095889681	5.55128602623483	5.79428814557784	5.87099193382707	-1.68133581695126	8.41860026667984e-09	4.51565597876416e-07
Merged-chr5-24053523-2	chr5	24053421	24053621	+	630.666626	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22831.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	3.31279678259538	3.29705696513942	3.31322715865034	3.34108200688926	3.13783679461279	3.23645592570477	3.30077800423654	3.79270320923032	0.256166693474718	0.64363641350241	0.849844109903689
Merged-chr12-32774889-4	chr12	32774806	32775006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-45429.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	6.29075637958629	6.6725969851029	5.67780310168115	5.81551203090429	6.7392522613119	6.75103212726474	6.24067615873111	6.21006671981214	0.507157323297407	0.0998431455076412	0.346609234862679
Merged-chr13-56593393-4	chr13	56593306	56593506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16180.0	NM_009369	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	5.63286475508303	5.6040859883271	5.51915602502436	5.87106277391331	5.91464683528311	5.60588066545034	6.09574654308549	6.24612316162213	0.497303844969335	0.0723508936020968	0.289016180803728
Merged-chr13-94162681-4	chr13	94162575	94162775	+	986.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	MTD|LTR|ERVL-MaLR	104879.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	5.35983263914746	4.97110274525614	5.81083638248771	5.7518577079901	5.12698481082193	4.98035978165675	5.11835826457706	4.91974358238339	-0.875628988449059	0.0101451210576099	0.0797217456126757
Merged-chr13-117036503-4	chr13	117036407	117036607	+	951.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10991.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	5.56548266811346	5.1324999494087	5.3238996796759	5.8219987244357	5.53174080584744	5.16511212891849	4.96206221236306	4.90291527428829	-0.576313691600665	0.0972115382656397	0.341632274227805
Merged-chr17-66101579-4	chr17	66101460	66101660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278415)	promoter-TSS (NM_001278415)	-1.0	NM_028388	72900.0	Mm.2206	NM_028388	ENSMUSG00000024099	Ndufv2	2900010C23Rik	NADH dehydrogenase (ubiquinone) flavoprotein 2	protein-coding	8.36826983028227	8.47105045585261	8.38564045249874	8.5151301959984	8.30921939148898	8.3559695039846	8.69532057746718	8.19155762672168	-0.048137934517134	0.778009218817703	0.913487233105429
Merged-chr18-20717112-3	chr18	20717010	20717210	+	870.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 3 of 8)	MER5A|DNA|hAT-Charlie	29294.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	3.39183011564463	3.38295113245654	3.50774753883086	3.63812866400413	3.49173399322157	3.3781449061015	3.59880319543529	3.84282006915902	0.303720530224542	0.551686957663636	0.799073691139046
Merged-chr1-136124454-4	chr1	136124342	136124542	+	944.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6741.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	4.82365270030655	4.735502218283	4.67193274126821	5.01155541044994	4.45779068478279	4.48399377593076	4.72800279061442	5.21763939396338	-0.145671492767325	0.703280900803828	0.880690314212345
Merged-chr1-128613968-2	chr1	128613882	128614082	+	878.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21683.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	3.43721148435827	3.3627334070905	3.43767267272937	3.76644612578409	3.16566860222409	3.60747852400153	3.24886926691236	3.43580746754929	-0.527013880441454	0.335291389440302	0.645664740658801
Merged-chr16-35901949-4	chr16	35901860	35902060	+	943.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-30578.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	5.16596742142671	4.80790251596256	5.06701915644815	5.60010628661338	5.56264438743137	4.89333712408297	5.00769946495364	5.22566887014554	-0.00166388915295777	0.996382971088684	0.998602617451138
Merged-chr13-110627828-4	chr13	110627732	110627932	+	984.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	232788.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	5.85885793687079	5.47276644739842	6.09882519401593	6.18071460989485	5.04096518224108	5.24866217433836	5.50850862341805	5.76476549209384	-0.881718960183908	0.0061056986745689	0.0549845048022697
Merged-chr2-32451510-4	chr2	32451382	32451582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164357)	promoter-TSS (NM_001164357)	-12.0	NM_146118	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	7.36741496796216	7.33758953347789	6.71476487298224	7.11272943594785	7.48999196991832	7.30927497366592	7.39858878302146	7.26153720297994	0.287490974122108	0.171308843104058	0.464464714253753
Merged-chr4-9605629-4	chr4	9605533	9605733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177854, intron 3 of 11)	Tigger7|DNA|TcMar-Tigger	38084.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	8.12590460466538	7.86939831361705	7.92591436151791	8.13102028569672	7.81492624948255	7.80221151754131	7.5783242552197	7.83304900020394	-0.336944198544096	0.049116061716213	0.22909778223449
Merged-chr11-11886559-4	chr11	11886456	11886656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190448, intron 1 of 14)	intron (NM_001190448, intron 1 of 14)	3852.0	NM_016672	13195.0	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	6.65787748421871	7.12765871015111	7.15263099258037	7.03251505887773	7.41256438180245	7.36280785415753	7.24539893387743	6.92494702747631	0.332938732092248	0.120217126596611	0.383810790826571
Merged-chr9-14381580-4	chr9	14381543	14381743	+	878.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028013)	promoter-TSS (NM_028013)	-401.0	NM_028013	71946.0	Mm.41423	NM_028013	ENSMUSG00000037419	Endod1	2210414F18Rik|2310067E08Rik|C85344	endonuclease domain containing 1	protein-coding	3.90456053599048	3.70859188859884	4.43917772503249	4.14206060427368	3.92024621517615	4.07854864066206	3.60871784904521	3.79666693072444	-0.586070549924506	0.226930493703124	0.535604327821614
Merged-chr12-75727597-4	chr12	75727497	75727697	+	878.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030750, intron 1 of 2)	intron (NM_030750, intron 1 of 2)	8132.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	4.58134501420735	4.200566600165	4.54451028812686	4.75387697083012	4.3237637487225	4.21722017031308	4.12755040640727	4.50282933767724	-0.569871795486206	0.155462116359284	0.441055362124336
Merged-chr10-125389483-4	chr10	125389370	125389570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-60507.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	6.0792445784041	6.28705338817199	6.62712134995214	6.25359198839401	6.11782372288291	6.53202038300787	6.17434033818385	6.5643895418976	0.047683565423582	0.849008742126543	0.942992906686184
Merged-chr5-138740349-4	chr5	138740244	138740444	+	948.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-14737.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	5.03346404430842	5.19282792193243	5.18881589428012	5.01001987841847	4.86487439509124	4.95665551787233	4.71789064342355	4.77731281991503	-0.536657505049347	0.0921499879081066	0.331998961472196
Merged-chr11-118508081-2	chr11	118507981	118508181	+	876.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 5 of 14)	intron (NM_001024931, intron 5 of 14)	31249.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	2.79137916312623	2.82484362325484	2.7214881352838	2.76341451131799	2.96627443301604	3.26183553857744	2.97107982430975	2.98091682748876	1.18073689496298	0.0481507452320831	0.226435114619083
Merged-chr1-16329874-3	chr1	16329767	16329967	+	617.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111272, intron 11 of 12)	intron (NM_001111272, intron 11 of 12)	189248.0	NM_001347044	29819.0	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen double-stranded RNA binding protein 2	protein-coding	3.07787618570783	2.97844522067214	3.35118529335243	3.13760413461856	3.47655506941394	2.83856928888914	2.94156486567546	3.07673272560405	-0.0937440020237586	0.882576763254664	0.95575354370667
Merged-chr2-33468568-4	chr2	33468483	33468683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027947)	promoter-TSS (NM_027947)	-51.0	NM_001355612	71834.0	Mm.44186	NM_027947	ENSMUSG00000026788	Zbtb43	1700010E06Rik|Zfp297b|mKIAA0414	zinc finger and BTB domain containing 43	protein-coding	6.79412344916336	6.78721668018484	6.64421431284007	6.56385830883614	7.02959568382901	7.13150916378559	6.81623017330145	6.999678618861	0.431435378667647	0.0309583693710814	0.170905828694243
Merged-chr6-124712165-4	chr6	124712082	124712282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013536)	promoter-TSS (NM_013536)	-4.0	NM_013536	14791.0	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	8.33521794245398	8.3920444706866	8.29301258414913	7.9898436923512	8.40724791427855	8.33630219758429	8.11378686304874	7.81520992845488	-0.0821283123197893	0.673411105299075	0.865721645311197
Merged-chr12-12249704-4	chr12	12249580	12249780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12459.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	5.88674122378468	6.01694954346879	5.95573573925003	5.84135332533236	6.20474517176295	6.0162044710485	6.03040789942699	5.56864004123111	0.100386327896758	0.700148823366151	0.879054781621322
Merged-chr18-12973283-4	chr18	12973162	12973362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008378, intron 1 of 10)	(CTCGG)n|Simple_repeat|Simple_repeat	-1198.0	NM_001357396	16210.0	Mm.8154	NM_008378	ENSMUSG00000024423	Impact	E430016J11Rik	impact, RWD domain protein	protein-coding	7.56719629621258	7.70903152584696	7.59523484986106	7.63153035047276	7.77751478279465	7.86591193680889	7.69919821034561	7.41015121031999	0.095100664999638	0.594852178308817	0.823614837620898
Merged-chr16-58509794-4	chr16	58509704	58509904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	13622.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	7.07426950152696	6.98004755236879	6.61502411280277	6.86058520650022	7.10782795392017	7.09032957653901	6.89179225459993	7.10505641741337	0.222615059949078	0.269628546637616	0.581290596108519
Merged-chr12-16920735-3	chr12	16920634	16920834	+	727.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	L2a|LINE|L2	25756.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	4.12663258598871	4.09648237500789	4.20925426223222	4.00407488659841	3.74670939767898	3.91022590382632	3.77478149071826	3.61141201574485	-0.974581591019911	0.0292267298618059	0.164411238094369
Merged-chr1-151499868-3	chr1	151499763	151499963	+	923.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360844, intron 1 of 8)	intron (NM_001360844, intron 1 of 8)	1128.0	NM_001360845	19821.0	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	4.45569199290401	5.00120690697615	4.15800604386705	4.02926101023471	4.10842807284383	4.1860852482474	3.69357915977243	3.89155724672726	-1.1990659584203	0.0159949989509439	0.109651163471948
Merged-chr15-27621089-3	chr15	27621001	27621201	+	880.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 2 of 6)	intron (NM_001013792, intron 2 of 6)	9592.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	4.12782378814037	3.83462691046206	4.08404934036056	4.4638288695613	3.84555021128885	3.71439529543523	4.06603424769186	3.88692497426716	-0.752728729725479	0.104207682879884	0.354865498981306
Merged-chr10-108155871-4	chr10	108155783	108155983	+	866.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6517.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	4.32374979354427	4.54108874453958	4.61564897981292	4.49360034660827	4.32936844834298	4.19431307937234	4.25845769436151	4.9375577875515	-0.0724748945516747	0.858962370909368	0.946576014812915
Merged-chr3-89428104-3	chr3	89427994	89428194	+	865.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011368, intron 12 of 12)	intron (NM_011368, intron 12 of 12)	-2120.0	NM_001293766	68911.0	Mm.22521	NM_026869	ENSMUSG00000047824	Pygo2	1190004M21Rik	pygopus 2	protein-coding	3.48474127037877	3.29985034343864	3.27979644937007	3.32721119436408	2.94358791453101	3.00174200756418	3.15192403539286	3.27800041477873	-0.991682114942026	0.082439803963291	0.311745354422945
Merged-chr8-48009223-1	chr8	48009123	48009323	+	628.5	f0_balb.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	-18672.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	2.91603532912449	3.06230469778298	3.29069513565421	3.02001470303193	2.58502542246069	2.82285261378779	2.965675996218	2.56248930394942	-1.58945252589362	0.0219240699546469	0.136231634683703
Merged-chr10-53876126-4	chr10	53876002	53876202	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125193.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	5.44451232840093	5.89004972626324	6.90065308089223	6.82895075897135	5.25559046572405	5.49232256349753	5.99765151098767	5.86595109377776	-1.10915958610457	0.0536932174022687	0.241872636002537
Merged-chr7-28430715-4	chr7	28430621	28430821	+	983.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175021, intron 1 of 12)	intron (NM_175021, intron 1 of 12)	5470.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	4.94446333883259	4.65864302881892	5.04814243077163	4.98066309139312	4.94747380839418	5.28389294505679	4.92153418969661	5.16983833230152	0.319840420641958	0.324539884808208	0.636147046452338
Merged-chr4-62561451-4	chr4	62561340	62561540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019492, intron 1 of 19)	intron (NM_019492, intron 1 of 19)	1593.0	NM_019492	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	5.50725596032877	5.47187752686349	5.15141833143903	5.61578262832491	5.35769251716266	5.14692680873762	5.2558112248675	5.21472095362226	-0.374302115266449	0.204242137985392	0.507425868749117
Merged-chr11-68468174-4	chr11	68468059	68468259	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	-34860.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	5.98355231605425	6.4392572142121	6.1431618564116	5.46376418494473	5.79954676372421	5.97953469510776	5.67267386024256	5.29944035440603	-0.5393529950801	0.097407308040911	0.341999446507374
Merged-chr12-100778486-4	chr12	100778401	100778601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361020)	promoter-TSS (NM_001361020)	-556.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	6.52049985049594	6.88618328730088	6.55367809438105	6.5260529743675	6.33972765528305	6.63125992894214	6.42195896143052	5.82244053080945	-0.433860075539082	0.0885608417791658	0.324747419349814
Merged-chr16-22095958-4	chr16	22095874	22096074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	ORR1F|LTR|ERVL-MaLR	67325.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	5.98631594655208	5.95390399750348	6.16335606291037	6.09039871798084	5.63394107358606	5.5269502517723	5.62414883273761	5.87352973500131	-0.619090404650283	0.0138668763936147	0.0993488067258282
Merged-chr2-92008469-4	chr2	92008361	92008561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011957, intron 1 of 11)	CpG	15709.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	7.84167706881342	8.02619861990518	8.1616271282222	8.18475311725492	7.97203167893448	7.97347660937398	8.38563719762773	7.73307597222185	-0.0336535208706526	0.863438322963807	0.948591391532472
Merged-chr12-69197173-4	chr12	69197056	69197256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033222)	promoter-TSS (NR_033222)	-55.0	NR_033222	414085.0	Mm.256223	NR_033222	ENSMUSG00000097061	9330151L19Rik	-	RIKEN cDNA 9330151L19 gene	ncRNA	6.55595952387102	6.64048202347345	6.74331507919537	6.81752526506924	6.85714662017218	6.81455953107347	6.80568316865722	6.5524420268534	0.0915489594528102	0.658006275543971	0.857633602881183
Merged-chr5-67875378-2	chr5	67875278	67875478	+	822.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-27947.0	NM_001038999	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	3.14229651155531	3.17777703391174	3.25400458704708	2.98417564557916	3.2059071774296	2.84350998417304	3.24070290589569	3.08168442929842	-0.117972334348424	0.840428214401201	0.939305852792169
Merged-chr5-43279933-4	chr5	43279836	43280036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177379, intron 7 of 10)	intron (NM_001177379, intron 7 of 10)	-44582.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	5.62331879481078	5.9831017970473	6.30319021694332	6.74597506763407	6.97089592939376	6.6108872836759	6.62485700213661	7.15749247834549	0.883978106566107	0.00402665497433361	0.0402603279137649
Merged-chr6-83115507-4	chr6	83115393	83115593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020619)	promoter-TSS (NM_020619)	-13.0	NM_020619	57377.0	Mm.28188	NM_020619	ENSMUSG00000030036	Mogs	1810017N02Rik|AI181835|Gcs1	mannosyl-oligosaccharide glucosidase	protein-coding	7.54219534770332	7.53714486913867	7.29789618133579	7.21904310450567	7.4748439877579	7.78137388386831	7.64898130501467	7.39684805195139	0.240113615585287	0.21033627622271	0.514821560649781
Merged-chr17-71486168-8	chr17	71486041	71486241	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10798.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	5.00618746979353	5.02818046953045	5.14545681153684	5.05410016348412	5.22312207513534	5.52799722845063	5.38350355440703	5.14193660493378	0.487642380885147	0.100401674403531	0.347845742631733
Merged-chr3-64204965-3	chr3	64204865	64205065	+	844.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-67485.0	NM_001104592	100125586.0	Mm.469888	NM_001104592	ENSMUSG00000043897	Vmn2r2	-	vomeronasal 2, receptor 2	protein-coding	3.69000430217663	3.89462902567535	3.84562128825241	3.82178111612581	3.62859396612347	3.8086640988962	3.67621154613255	3.93705500631731	-0.159794018839451	0.725548477570454	0.890921883682774
Merged-chr7-27329533-4	chr7	27329452	27329652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113549, intron 3 of 29)	CpG	4096.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	6.91938893293889	6.65659465631892	6.88086566724456	6.76505721703698	7.05466631203263	7.10991978779798	7.14275916484126	6.67200101486007	0.286276261377877	0.16840346471427	0.460469608122923
Merged-chr7-27325909-4	chr7	27325810	27326010	+	902.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113549, intron 11 of 29)	intron (NM_001113549, intron 11 of 29)	7738.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	4.63228472538727	4.91098901643881	4.74254323454463	4.73885547823326	4.33167958448753	4.3622543898752	4.40684719083184	4.33109368776326	-0.91403352467542	0.011420932385256	0.0867681231988621
Merged-chr8-106500173-4	chr8	106500079	106500279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10673.0	NM_007665	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	8.04130063839822	8.00053452433266	7.70219574515597	7.92197358003174	7.80588144933373	7.8544835809137	7.46717247925119	7.7134851551146	-0.265301818877414	0.140047659834633	0.416132430781438
Merged-chr4-132353665-4	chr4	132353572	132353772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003270)	promoter-TSS (NR_003270)	14.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	6.2862733732411	6.90980282238496	6.34455918482118	5.97590893986004	6.66222950865156	6.77248050894998	6.3304096782134	6.34001004218106	0.179861816409919	0.520482764790554	0.780787600139836
Merged-chr3-53483887-4	chr3	53483778	53483978	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4915.0	NM_153156	229277.0	Mm.222810	NM_153156	ENSMUSG00000027744	Stoml3	Epb7.2l|SLP3|sro	stomatin (Epb7.2)-like 3	protein-coding	4.76664212364329	4.8170347806004	4.91412562575412	4.77432929939134	4.90567279083616	4.94132720797609	5.02057272287849	4.80249676863402	0.211959373938344	0.506293677382844	0.77199455158273
Merged-chr13-48870230-6	chr13	48870115	48870315	+	891.986084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011078, intron 1 of 21)	CpG	670.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	4.19447114674213	3.98308075920192	4.92091986789497	4.24727292500894	4.25734842625644	4.37172915240315	4.31450433061142	4.33142227156659	-0.14671000087065	0.738313530103674	0.896701754212797
Merged-chr12-17239075-3	chr12	17238926	17239126	+	657.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27569.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	3.04095935395781	3.22616273962972	3.19762479434918	3.0081564357657	4.39042310757655	3.81879890205704	3.86809532948899	3.92832237858897	3.02041414679711	2.1604804101345e-08	1.07614300288988e-06
Merged-chr13-41019953-4	chr13	41019823	41020023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360770, intron 3 of 4)	intron (NM_001360770, intron 3 of 4)	3673.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	5.9663010070974	5.66486513145444	5.7839057490669	5.69070903879982	5.95173537566494	6.00735943248069	6.05803885609923	5.75490849832359	0.284209295370285	0.256165553022809	0.567777539347653
Merged-chr8-3848353-2	chr8	3848253	3848453	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_130905, exon 6 of 6)	3' UTR (NM_130905, exon 6 of 6)	5933.0	NM_130905	170780.0	Mm.52281	NM_130905	ENSMUSG00000040197	Cd209e	SIGNR4|mSIGNR4	CD209e antigen	protein-coding	3.14883636470934	3.13828850836177	3.20689159511956	3.75805518023773	2.69863577417836	3.06925499177721	2.95018949550983	3.02430402940394	-1.72946839161627	0.00944795805172915	0.0758096330085214
Merged-chr13-48639774-2	chr13	48639674	48639874	+	741.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14102.0	NM_001301781	218232.0	Mm.315089	NM_207232	ENSMUSG00000038042	Ptpdc1	AI843923|AW456874|Naa-1|Ptpcd1	protein tyrosine phosphatase domain containing 1	protein-coding	2.95979237254548	3.14587921494977	3.18502750122747	2.75194137721029	3.1475118519535	2.63360960919803	2.9495755389573	2.89587051219444	-0.394934897490061	0.553614349993753	0.800299811020219
Merged-chr18-75696642-2	chr18	75696543	75696743	+	876.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 1 of 11)	CpG	1053.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	3.54855657181037	3.31652831394305	3.69550324927022	3.09584219647318	3.43033963045738	3.43850440648611	3.4276657111602	3.54698153065179	0.136022973550379	0.801444029895062	0.923373010746206
Merged-chr9-65909435-2	chr9	65909335	65909535	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019797)	promoter-TSS (NM_019797)	425.0	NM_173185	214897.0	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	4.12668987436583	4.15551567943856	4.21763411539149	3.90194850315754	4.30310561929322	4.20410280950531	4.2411036797682	3.97645572184692	0.255681952934499	0.535020915840734	0.789545441306942
Merged-chr6-134632327-3	chr6	134632208	134632408	+	705.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026345, exon 1 of 4)	5' UTR (NM_026345, exon 1 of 4)	180.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	3.29715279534046	3.38578195883809	3.41430462059945	3.59517770483169	3.06478350314478	3.4111603858441	3.2858220839267	3.75247928014081	-0.118871938451112	0.833022047785413	0.936221000578989
Merged-chr19-41912467-3	chr19	41912378	41912578	+	870.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023418, intron 1 of 3)	CpG	607.0	NM_023418	18648.0	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	3.98707139524567	3.49911456557659	3.84284145968475	3.83246436927153	3.7280314431713	3.79929256395647	3.96993050155173	4.194499595392	0.369269604296085	0.432320021375333	0.722383839651505
Merged-chr5-113017212-4	chr5	113017113	113017313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1675.0	NM_177078	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	5.80671310258156	5.51071131718027	5.4274897147402	5.41933702184182	5.93891869466298	6.27192937484276	5.84615056410929	5.70609129086637	0.680702557307155	0.0131682095012356	0.0957926400775782
Merged-chr10-79877902-4	chr10	79877791	79877991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1776.0	NM_011178	19152.0	Mm.2364	NM_011178	ENSMUSG00000057729	Prtn3	PR3|mPR3	proteinase 3	protein-coding	6.52556984975631	6.41266564431561	6.28395439044148	6.26153753733087	6.45991735202153	6.31950212923779	6.47769983433025	6.33553668229361	0.0553708334002576	0.799579599318615	0.92261378085982
Merged-chr18-5085201-3	chr18	5085087	5085287	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347449, intron 11 of 30)	intron (NM_001347449, intron 11 of 30)	38598.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	3.43042589967797	3.34917770067788	3.48321242531645	3.31183955612857	3.24759111988756	3.49069846155798	3.05464674914046	3.42896180605859	-0.277305066984549	0.606337922310689	0.829368409964156
Merged-chr3-58414640-4	chr3	58414540	58414740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081229)	promoter-TSS (NM_001081229)	-80.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	6.71170387404646	6.98183651187053	7.08333682637446	6.98254139206693	7.2143776463772	7.29506803052002	6.97453555333191	7.3542857556275	0.365829351411873	0.0660101379077994	0.273584518693628
Merged-chr8-124290990-1	chr8	124290890	124291090	+	798.5	f0_balb.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	59596.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	3.11786549226715	2.89160685328513	3.58265433746324	3.44871503088768	2.43692262785514	2.59711098261982	2.56727033269178	2.80205128825379	-4.10793814260984	3.44724418060628e-05	0.000816272100902776
Merged-chr17-71254892-4	chr17	71254813	71255013	+	809.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 7 of 7)	intron (NM_001357337, intron 7 of 7)	50259.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.71247512052294	3.83054604528108	3.60003600084703	3.33895492566708	3.65665229457635	3.9894350136022	3.58621299970852	4.23525743087867	0.778167032156913	0.124990874423499	0.3923929542006
Merged-chr12-3696308-4	chr12	3696187	3696387	+	920.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 9 of 17)	intron (NM_001162465, intron 9 of 17)	-110693.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	4.301083380546	4.42356369810366	4.25462537473247	4.51539213058089	4.67735606564052	4.28087358888287	4.53159069277629	4.38833055304607	0.226348159151557	0.552941882597324	0.799940047181865
Merged-chr10-121494104-4	chr10	121494001	121494201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17851.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	5.76549049686934	5.2765238565178	5.38500893637769	5.71373230691466	5.58159166025659	5.46642558496867	5.63982713849413	6.30612749563521	0.389387224895635	0.225111179122519	0.533502988868384
Merged-chr2-35232162-4	chr2	35232067	35232267	+	810.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24192.0	NM_001206367	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	4.04753296798237	3.47671554983604	4.00516343558703	3.92433635137621	3.88930164464544	3.58618380290585	3.8009227139688	3.81449785743748	-0.284136652010004	0.556377449048459	0.801943795351037
Merged-chr10-22286504-2	chr10	22286404	22286604	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177775, intron 4 of 5)	intron (NM_001177775, intron 4 of 5)	13030.0	NM_001177775	667281.0	Mm.484254	NM_001177775	ENSMUSG00000075297	H60b	EG667281	histocompatibility 60b	protein-coding	3.15532835700414	3.70008039940977	3.21928013630318	3.2226086826133	2.98866736566556	3.66580949879476	3.20764047709141	3.21765306419824	-0.188137360968277	0.754335295201796	0.90325065569559
Merged-chr19-11060572-4	chr19	11060463	11060663	+	845.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9997.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	4.05762343154352	4.33364346033784	3.80448201404519	3.69454080337493	4.41995293648499	4.27425771927162	3.61246399851568	3.49023868914748	0.0509931454898672	0.926771528205003	0.973117623893315
Merged-chr9-37656537-3	chr9	37656446	37656646	+	861.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025289, intron 1 of 8)	intron (NM_025289, intron 1 of 8)	766.0	NM_025289	21376.0	Mm.28689	NM_025289	ENSMUSG00000011114	Tbrg1	AA408552|AA409675|Niam|Tb-5|mFLJ00213	transforming growth factor beta regulated gene 1	protein-coding	3.70818540006951	3.04073097180667	3.61139098376034	3.38927380590977	3.04216914412138	3.44738649401509	3.43615455621451	3.92092005463803	0.135296738378408	0.825559943453774	0.933108872014231
Merged-chr14-70800597-3	chr14	70800509	70800709	+	834.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26228.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	4.23998600568945	3.76862586909911	4.11356683834571	4.7264388003488	3.45310016664777	3.6901763345218	4.00342593178341	3.81198318114341	-1.42715324668216	0.00625483350378098	0.055952343089811
Merged-chr2-102899401-4	chr2	102899315	102899515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	2250.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	5.46190450672049	5.50369020755583	6.00493269143903	6.03540676174331	6.14125253144598	5.79260381339581	6.20253300755735	6.06208118929266	0.426180946285055	0.131604575074231	0.403910057313241
Merged-chr2-31298031-4	chr2	31297879	31298079	+	923.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52056.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	4.32058710055744	4.24299385454146	3.94293567719641	3.80469002922419	4.43531207971662	4.12086652981532	4.21751523545671	4.2769121581	0.486851702348377	0.252717885518648	0.563984491060167
Merged-chr5-140842087-3	chr5	140841994	140842194	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11663.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	6.27163212431622	5.95842642899147	6.87372013012561	7.06352793134545	4.20515797163591	4.55304427638078	4.61524342998869	4.68826751628964	-3.93102675305932	5.7312301904923e-23	2.79413173787021e-20
Merged-chr13-45000994-4	chr13	45000888	45001088	+	910.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 1 of 9)	intron (NM_025772, intron 1 of 9)	1108.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	4.45054296173372	4.29238632918171	4.33102313983349	4.16387447917677	4.60100044475563	4.00590940585942	4.1329654087629	4.04772271576315	-0.165418347163781	0.699659055237282	0.878885016610616
Merged-chr2-129304673-4	chr2	129304564	129304764	+	941.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010554, intron 5 of 6)	intron (NM_010554, intron 5 of 6)	5308.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	4.27530986842054	4.14394190079751	4.12680343211718	4.06151707323775	4.53647351973029	4.58264321554597	4.61914236521765	4.70714138175015	1.09243993330694	0.00291274218873741	0.0312473362851756
Merged-chr18-54998655-4	chr18	54998575	54998775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6084.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	5.73252114677437	5.59660018395701	5.42733152543171	5.87082360753311	5.66666661516595	5.93227344589924	5.86566156656702	5.80151158003037	0.212123752354373	0.428371448118491	0.719417014029826
Merged-chr5-124031233-4	chr5	124031143	124031343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	1017.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	5.62718785083145	5.39029244809382	5.72922413803599	5.75102670515617	5.83088943828521	5.57584167700871	5.59982128336248	5.84091760372817	0.141908151216742	0.597452176718152	0.82529980761181
Merged-chr16-50632821-4	chr16	50632703	50632903	+	951.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040566, intron 3 of 4)	intron (NR_040566, intron 3 of 4)	-41649.0	NM_027046	69339.0	Mm.422869	NM_027046	ENSMUSG00000050685	Ccdc54	1700007N18Rik|AI644412|BB013989|NYD-SP17	coiled-coil domain containing 54	protein-coding	5.27635157380625	5.00215702036685	5.90583152656794	5.98792820033376	4.82297256034663	4.66086931847585	4.86964108003708	5.07831698880639	-1.38919813461699	0.000203303212402473	0.00368685843454665
Merged-chr11-23659058-4	chr11	23658971	23659171	+	958.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023651, intron 1 of 3)	intron (NM_023651, intron 1 of 3)	-6603.0	NM_028956	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	5.2540327195398	5.15528746107131	6.33856431810349	6.48536594880238	4.94920482840335	4.9686859597451	4.97257733104345	5.31650741976983	-1.54127159699317	0.00014674793803467	0.00280262180879254
Merged-chr13-95324386-3	chr13	95324285	95324485	+	885.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028106)	promoter-TSS (NM_028106)	-440.0	NM_028106	72114.0	Mm.3774	NM_028106	ENSMUSG00000041995	Zbed3	0610037K01Rik|2610005H11Rik|AU018975|AU024588	zinc finger, BED type containing 3	protein-coding	3.79887169687976	3.97828179935041	3.9617541545027	4.06395460717381	4.1810406297369	4.55583867753536	3.893906485629	3.8536074749739	0.493897255152691	0.277344131445392	0.589497071552543
Merged-chr11-69120326-3	chr11	69120220	69120420	+	867.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033041)	promoter-TSS (NM_033041)	-133.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	3.90155984707044	3.79867022708521	4.05589726044867	3.42803308297804	4.18109034952195	4.3226995713701	3.88580367286192	4.65728131925131	1.27976051439558	0.00721979718721188	0.0622906598774005
Merged-chr2-84246704-1	chr2	84246604	84246804	+	572.5	f0_c57.idr	Intergenic	Lx9|LINE|L1	178562.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	2.49338481231034	2.36583744150255	2.49360073759106	2.41978086579039	3.04009379053231	2.95268814824166	3.05027789134362	3.01030141285148	2.90576472152712	3.40497629556785e-05	0.000807606823532903
Merged-chr3-137991369-4	chr3	137991276	137991476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9827.0	NM_011932	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	5.87555452997302	5.71181381948991	5.26469373234166	5.55654788148558	5.54925000047096	5.79429617540078	5.5394471004865	5.42122180599478	-0.0649693845204284	0.820274564812473	0.931216561407907
Merged-chr1-192771163-2	chr1	192771063	192771263	+	933.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144881)	promoter-TSS (NM_144881)	56.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	3.86661871709457	4.28036541193423	4.43993204282244	4.17467098923383	3.9742059723231	4.16063742908052	4.38015296342389	4.58201527419011	0.206315798288084	0.635346316364828	0.84567498415237
Merged-chr1-43912467-4	chr1	43912356	43912556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21538.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	6.55324324410883	6.57368028473931	6.45946477438281	6.23045106255655	6.06581459199362	6.18812587007822	6.37632122448847	6.18048374319239	-0.371283546712055	0.110470791590181	0.367014238608783
Merged-chr2-90655671-4	chr2	90655564	90655764	+	891.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21551.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	4.51964736535052	4.46681429507793	4.29888918271206	4.6175341292007	4.19955691887311	4.8069465136172	4.37252857011233	4.70590232196952	0.100183649895485	0.799054403617598	0.922381586635156
Merged-chr1-86407147-4	chr1	86407056	86407256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17795.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	7.07408764578676	6.50989217135581	7.12093289406716	7.60303576698002	6.72052391188207	6.43495226251073	7.01621386773119	6.90953548543093	-0.495281654183158	0.0712558805946172	0.286424026180039
Merged-chr13-49188123-4	chr13	49188030	49188230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	583.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	8.49329628524421	8.97092332063835	8.8458009349824	8.63679081991092	8.75085603076514	8.93966405809743	8.90980365414548	8.6748052562189	0.0911192767437709	0.591444302965082	0.821624849540411
Merged-chr18-49968895-4	chr18	49968790	49968990	+	851.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10537.0	NM_001177760	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	4.2942708787086	4.12291080569155	4.38455837409283	4.47205915988512	4.51285782273413	4.51345893708174	4.56270294785247	4.42432577951083	0.388470690993777	0.300602525356903	0.612505973963948
Merged-chr17-7931764-4	chr17	7931657	7931857	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145968, intron 8 of 9)	intron (NM_145968, intron 8 of 9)	5757.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	5.13382519537982	4.6468265888062	4.83331149040796	4.80078303562155	4.80236669892298	4.52001408308963	4.16418677272373	4.33707629100784	-0.793945166919578	0.0447915230003891	0.216238186085506
Merged-chr7-34920003-2	chr7	34919903	34920103	+	863.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 1 of 14)	intron (NM_008820, intron 1 of 14)	7596.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	2.89874041446397	2.98129520947215	2.89905013979142	2.87758361156318	3.03382252673024	3.1394232072553	3.18859299870869	3.35210632794898	1.08983849949038	0.0553809305399578	0.246099043939432
Merged-chr17-50157936-4	chr17	50157825	50158025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	32572.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	6.36720022638821	6.73702058086323	5.90183424263693	5.68245634596775	6.77829060497694	6.88336952627959	6.42078869528477	5.70534190015348	0.423751429069315	0.223554339172517	0.531617476545523
Merged-chr8-25978021-4	chr8	25977933	25978133	+	764.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1289.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	3.25544152678221	3.03807101874094	3.48967927852032	3.48814754307386	3.39508624631833	3.55049293527112	3.57696877425633	3.63862707199289	0.674967014833977	0.211325157200322	0.515947922032722
Merged-chr16-21382360-4	chr16	21382259	21382459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40759.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	7.39136988426762	7.44657885477773	7.25555155362076	7.61612983500289	7.44964456596601	7.5084494278383	7.57459149634364	7.36738221765138	0.0404410099615628	0.824519436052807	0.932696938095671
Merged-chr10-37321389-4	chr10	37321289	37321489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-182463.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	7.5234240795245	7.97764798822656	7.62415904558725	7.56360673348447	7.87934176098591	7.74787252815717	8.09341638735223	7.49117412616231	0.182078038751744	0.374003992972829	0.677397508129094
Merged-chr19-7039524-4	chr19	7039442	7039642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016737, intron 1 of 13)	CpG	484.0	NM_016737	20867.0	Mm.258633	NM_016737	ENSMUSG00000024966	Stip1	Hop|Sti1|p60	stress-induced phosphoprotein 1	protein-coding	5.27556663008698	5.30477134663456	5.21507932814724	4.40456458345297	5.25738167573474	5.47976563308257	5.25002144853441	5.4142444877087	0.492629779685267	0.172646976405238	0.466172528668856
Merged-chr16-87575908-2	chr16	87575828	87576028	+	701.25	f0_balb.idr|f1_c57bl6.idr	intron (NM_144854, intron 3 of 4)	intron (NM_144854, intron 3 of 4)	22598.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	3.29389201308731	3.06730863632766	3.14155300700023	3.15202474499689	2.58693634534537	2.72180103327568	3.0167665254284	2.76642130414205	-1.82095919730635	0.00713433545373201	0.0617704492471951
Merged-chr17-37017702-2	chr17	37017602	37017802	+	732.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010814, intron 2 of 7)	intron (NM_010814, intron 2 of 7)	5696.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	3.13649507454927	2.87069496927625	2.96676988499196	3.22765138946777	2.80339864785244	2.87605913847215	2.83080209835043	3.02447934266657	-0.7916045012614	0.2002714883138	0.502294723984776
Merged-chr19-46044364-4	chr19	46044303	46044503	+	616.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113408, intron 1 of 10)	intron (NM_001113408, intron 1 of 10)	908.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	3.3825007211332	3.15898282003301	3.01487244507213	3.23523676385991	3.35472321525787	3.55063020949064	3.31536657937311	3.2696491169342	0.610215120417729	0.257548980620953	0.569372267342262
Merged-chr7-35151869-2	chr7	35151769	35151969	+	845.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32576.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	3.53229015058325	3.43538082321355	3.53281852076709	3.1442654240651	3.34025884943734	3.24206143417272	3.18556580507958	3.37361546577947	-0.431924811055743	0.429128604244594	0.720093944116318
Merged-chr3-127837577-4	chr3	127837476	127837676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346718)	promoter-TSS (NM_001346718)	-53.0	NM_145964	211556.0	Mm.403486	NM_145964	ENSMUSG00000074238	Ap1ar	AA407621|C78909|Gadkin	adaptor-related protein complex 1 associated regulatory protein	protein-coding	8.12328606766751	8.06790121160519	7.95108398928934	8.12452042336725	8.07684750281335	8.31427045896919	8.3178924580413	7.93863470091627	0.126034426819256	0.457227518490969	0.740399434404147
Merged-chr15-102459644-3	chr15	102459523	102459723	+	881.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025385, intron 2 of 4)	intron (NM_025385, intron 2 of 4)	453.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	3.58305948039113	3.97450539387731	3.68628754050599	3.57349290679418	3.28239891258805	3.39866331665923	3.33868150937926	3.63383069395356	-0.983387238947172	0.0598839887074602	0.25815058353323
Merged-chr6-28880978-5	chr6	28880828	28881028	+	982.8666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 18 of 23)	intron (NM_019776, intron 18 of 23)	-49181.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	4.43134177937993	4.58797254967636	4.83885496662909	4.18992511840035	4.32100520258857	4.32193325909123	4.61121196953831	4.63023776106671	-0.097245642916379	0.807940934560914	0.92593795364266
Merged-chr8-79734498-3	chr8	79734407	79734607	+	774.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357237, intron 5 of 5)	intron (NM_001357237, intron 5 of 5)	22658.0	NM_001357236	68999.0	Mm.257445	NM_026904	ENSMUSG00000036977	Anapc10	1500026N15Rik|A830003M23Rik|APC10	anaphase promoting complex subunit 10	protein-coding	3.99216624436452	3.90324196807493	3.52358595805681	3.82468450251821	3.94802928768599	3.63972837253006	3.62983986699907	3.94594833835443	-0.0475387326957756	0.920466390748933	0.970498072867264
Merged-chr16-35764207-4	chr16	35764123	35764323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	intron (NM_153550, intron 1 of 8)	5133.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	5.88969498331505	6.54695433289351	6.45855931921897	6.37228039102758	6.17775651959766	5.96484609092043	6.1050879151001	6.02571558865468	-0.412749005495173	0.100969331786912	0.348744146510806
Merged-chr2-150672933-4	chr2	150672817	150673017	+	955.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4677.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	5.42883025408571	5.74767135219261	6.32746555986474	6.28192489036748	5.32112782827809	4.99957317231055	5.72791435429534	5.57264706928459	-0.949652353089276	0.00529109677032551	0.0496329700863204
Merged-chr13-112102206-3	chr13	112102101	112102301	+	754.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186250.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	4.0440350546141	3.57256198795047	4.33996143836807	4.04477215243988	3.81983243213065	3.45955023462709	3.40013756883421	3.26831258324654	-1.54889033123724	0.00682108159030844	0.0597707456009558
Merged-chr1-186123886-4	chr1	186123798	186123998	+	658.779175	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-6588.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	3.84242247090802	3.96429166230869	4.17667798668805	3.92366933261448	4.10041220430057	4.16704941020361	3.93102069057148	3.99426846749801	0.201962519140821	0.632133528481578	0.843729759303872
Merged-chr4-136117201-4	chr4	136117066	136117266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26656.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	7.18156488117765	7.63678013069709	6.87692593614642	7.18043110898528	7.11155845582273	7.24162459727711	7.33478483902984	7.22220319525329	-0.0323753333837412	0.881903516390697	0.955512673028357
Merged-chr8-116629174-4	chr8	116629062	116629262	+	929.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	intron (NM_029441, intron 1 of 6)	103829.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	4.57712267843279	4.92388514954569	4.04288966726019	3.97167058932853	4.83664356182013	4.89980686460143	4.43160804765384	4.53428713949442	0.553578225205525	0.217677432998904	0.524640181886301
Merged-chr11-97987771-4	chr11	97987662	97987862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1316.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	6.06799166021059	6.37790077247908	6.21381770706306	6.13337305526687	6.45937451323176	6.44638243954752	6.32854866578862	5.90149291910891	0.160670249598844	0.512009144762314	0.775674674677268
Merged-chr10-69321461-4	chr10	69321414	69321614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31398.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	4.85489487488335	5.23268109289791	4.89282019614039	5.16182377513221	4.88069676923306	4.95382278312326	4.83281162644994	4.88957357633353	-0.336096457571156	0.298058835090455	0.610255424216985
Merged-chr9-118554697-3	chr9	118554628	118554828	+	932.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018748, intron 14 of 23)	intron (NM_018748, intron 14 of 23)	48410.0	NM_018748	54214.0	Mm.10409	NM_018748	ENSMUSG00000038708	Golga4	AI225887|AU019508|Olp-1	golgi autoantigen, golgin subfamily a, 4	protein-coding	3.25802713706655	2.69828531346625	2.85370678778681	3.01651401082295	2.51254535037636	2.62113242472095	2.50945556281558	2.51467023617795	-2.34547320113738	0.00208023375699039	0.0241036885217025
Merged-chr7-122034502-4	chr7	122034425	122034625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026140, exon 9 of 9)	3' UTR (NM_026140, exon 9 of 9)	-13327.0	NM_028758	74105.0	Mm.29619	NM_028758	ENSMUSG00000030872	Gga2	1200007E24Rik|mKIAA1080	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding	5.28570360495654	5.42262545845368	5.18779128616094	5.59932303652247	5.31845840467568	5.58135434654205	5.51612010670205	5.43225681768133	0.0975818625493352	0.736540961089151	0.896043754662457
Merged-chr11-77686677-4	chr11	77686612	77686812	+	953.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024205, intron 1 of 3)	intron (NM_001024205, intron 1 of 3)	573.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	4.81161061875635	5.07511097832303	4.6436342606839	4.22415701829992	5.04653486043074	5.44485829316552	5.07037357106991	5.34984090635026	1.02335121723	0.00578384891564954	0.0528822841319228
Merged-chr18-20816656-4	chr18	20816561	20816761	+	975.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361188)	TTS (NM_001361188)	-70257.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	5.25584308558425	4.60255979860004	4.99979975444219	5.37628240777723	5.15540955449609	5.02675193502752	5.20136913543156	5.1936438094733	0.0766830104697005	0.823156944016219	0.932185203682946
Merged-chr8-120109356-4	chr8	120109278	120109478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4774.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	6.85949782705912	7.10077780714215	7.20682835333564	7.44100900946195	6.88880382717482	7.10620457992303	7.2541487820582	7.02788653369675	-0.153701897682866	0.47430265797251	0.75165330690546
Merged-chr11-34010996-4	chr11	34010913	34011113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-17820.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	8.16116801218389	8.42018299249436	8.26361887424086	7.80998170286838	8.39888435747865	8.39478769053973	8.38500378163749	8.21163905613306	0.223218412010162	0.228780040179623	0.537596463634261
Merged-chr2-76370103-4	chr2	76370090	76370290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153405, exon 1 of 10)	exon (NM_153405, exon 1 of 10)	206.0	NM_153405	241490.0	Mm.33310	NM_153405	ENSMUSG00000042369	Rbm45	Drb1|Drbp1|G430095G15Rik	RNA binding motif protein 45	protein-coding	4.9335974678764	4.71521813424223	4.96970759087439	4.79231179237723	5.0045947910944	5.36290994276297	4.91068712807183	5.09828527532116	0.490613260768302	0.127046676250414	0.396468734658609
Merged-chr16-65739854-3	chr16	65739758	65739958	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75775.0	NM_028572	73569.0	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like family member 3	protein-coding	3.90466027588224	3.73424287976558	3.90527889598871	2.44518645378035	6.61330352796584	6.79833273793629	6.81951076680964	6.50065202930685	10.3323648242947	1.83393912244067e-29	2.17563254660341e-26
Merged-chr18-44759233-4	chr18	44759130	44759330	+	981.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001085373, exon 2 of 19)	exon (NM_001085373, exon 2 of 19)	52952.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	4.97717519697216	4.90570026690685	4.9427756734672	4.7597255409435	5.19108443048958	5.18525645815891	4.72859762836821	5.22560069983686	0.415918541041954	0.199293303126656	0.501112689813913
Merged-chr4-9650889-4	chr4	9650786	9650986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	MTB_Mm|LTR|ERVL-MaLR	-7169.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	5.41718209921022	5.32197801642939	5.15472492505931	4.860107965398	5.80237659773474	5.85965537928057	5.89588758846266	5.75209897755636	1.11801296932109	9.22929392198062e-05	0.00190029479916881
Merged-chr10-43479546-3	chr10	43479473	43479673	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199028, intron 1 of 3)	CpG	433.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	4.7572355026145	5.03252117461782	4.79759453622889	4.70150948472201	5.2785660297211	4.85278239440455	4.85010869500796	5.13423980373873	0.45759748339439	0.170110847627005	0.463104108591854
Merged-chr4-111721108-2	chr4	111721008	111721208	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026470, intron 1 of 12)	intron (NM_026470, intron 1 of 12)	1098.0	NM_026470	67946.0	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	3.09205385926237	2.99119715695253	3.209684957977	3.01141134896695	3.0600508412582	3.32226136668331	3.25110960417122	3.09089530385579	0.426382456186758	0.443724243830503	0.730211729859463
Merged-chr8-78508893-4	chr8	78508806	78509006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009033)	promoter-TSS (NM_009033)	22.0	NM_001252089	19656.0	Mm.24718	NM_009033	ENSMUSG00000037070	Rbmxl1	Hnrpg|Rbmx|Rbmxrt	RNA binding motif protein, X-linked like-1	protein-coding	5.93751685012901	5.78116499262092	5.74147715652043	6.14901972760609	6.25384266056823	6.2431435546081	6.09744873883565	5.88789013335437	0.315882216579435	0.217965146493997	0.524902431312252
Merged-chr3-61241549-3	chr3	61241455	61241655	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122952.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	3.36132014719823	3.35355857551577	3.81570983921217	3.67107077880538	3.37302350131455	3.27806487057447	3.46402899757722	3.58168264366244	-0.47051599256296	0.373397024303539	0.677043682313572
Merged-chr14-79532554-4	chr14	79532463	79532663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	16889.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	6.25059168099194	6.25682014241838	6.02425306768643	6.33061312480597	6.27976394062939	6.17859824237277	6.2568150359099	6.33836784216967	0.0526911566819166	0.815068268128784	0.928708522466333
Merged-chr14-40924512-3	chr14	40924436	40924636	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	MIR3|SINE|MIR	23673.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	4.40796382717553	4.42426491963827	4.56324731346855	4.98857531795204	3.98638249415415	3.91379953928028	4.06629664919027	4.13247164659895	-1.50786695167779	0.000429242427824088	0.00681227352733351
Merged-chr16-5145764-4	chr16	5145667	5145867	+	867.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1342.0	NM_001127725	665119.0	Mm.102072	NM_001127725	ENSMUSG00000091712	Sec14l5	-	SEC14-like lipid binding 5	protein-coding	3.9060020615907	4.56100630156326	3.71557674430309	4.40747316524182	4.46920609787112	4.25223997886627	4.49414640028153	4.54943221571135	0.56814304167151	0.223951688972683	0.53210045864795
Merged-chr5-34233945-4	chr5	34233845	34234045	+	759.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 4 of 12)	intron (NM_001015039, intron 4 of 12)	-46235.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	4.21118109332277	4.47608748855516	4.06899108686387	4.14230830047098	4.33810436745738	4.29159482885302	4.23703857170274	3.84866158262173	-0.085721097961006	0.839288331065268	0.938895262970456
Merged-chr1-173682438-4	chr1	173682337	173682537	+	910.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162938, intron 3 of 6)	intron (NM_001162938, intron 3 of 6)	8757.0	NM_001162938	100033459.0	Mm.303377	NM_001162938	ENSMUSG00000066677	Ifi208	9830148g24rik|E430029J22Rik|NG2creBAC|Pydc3|Pyr-rv1|Tg(Cspg4-cre)1Akik	interferon activated gene 208	protein-coding	4.06113027319084	4.06273645437099	4.33504978786552	4.07761480915516	4.9550885217584	5.03238708327513	5.22731964883807	4.82309529355888	1.92800311121519	9.32571165613264e-08	4.01539236234286e-06
Merged-chr19-46708082-3	chr19	46707986	46708186	+	650.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020577, exon 3 of 11)	exon (NM_020577, exon 3 of 11)	643.0	NM_020577	57344.0	Mm.28566	NM_020577	ENSMUSG00000003559	As3mt	2310045H08Rik|Cyt19	arsenic (+3 oxidation state) methyltransferase	protein-coding	3.49304234133429	3.55056503458257	3.92335518855734	3.35128503399282	3.28173218567083	3.87158148390517	3.23452591400179	3.37325571872165	-0.422187401136158	0.45260701450359	0.736924187051972
Merged-chr17-69145979-4	chr17	69145889	69146089	+	904.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	-10755.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	3.54536270961466	4.18917891386817	4.17164829886938	4.33232320648189	4.08068380984939	4.38654467542677	4.06019082599558	4.33836577258239	0.297960826150725	0.529849387134671	0.785996306897363
Merged-chr1-128707922-4	chr1	128707835	128708035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115636.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	5.88770167365787	5.74986798016087	6.01787380465355	6.70607706336018	5.67311912983084	5.47730612696352	5.61053520195263	5.48951788290584	-0.969285252232408	0.00218499166465915	0.0250303956591117
Merged-chr3-41563365-4	chr3	41563258	41563458	+	983.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172303)	promoter-TSS (NM_172303)	-25.0	NM_172303	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	5.42632270276406	5.17482929965092	4.87012271979073	5.26164554319597	5.32240426924913	5.04963034998674	5.37334006748457	5.31275055982305	0.130890853746581	0.670704388569481	0.864214400064935
Merged-chr3-106873098-2	chr3	106872998	106873198	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-50541.0	NM_146489	258482.0	Mm.377527	NM_146489	ENSMUSG00000043529	Olfr266	MOR122-2	olfactory receptor 266	protein-coding	3.01218546279922	2.86694847399107	2.9477056326277	3.08693645067585	3.16854084938457	3.24412970528473	3.12221902185114	3.3902232862783	0.971831341637767	0.08956011823595	0.326714389310366
Merged-chr6-118127355-4	chr6	118127263	118127463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362149, intron 2 of 7)	intron (NM_001362149, intron 2 of 7)	11467.0	NM_001362149	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	5.21712427182019	5.27533176814104	5.25016307784417	5.47263906874868	5.24196614516055	5.327313030037	5.42762876616257	5.50400865488519	0.0903937578791769	0.753730441985861	0.902814735650825
Merged-chr3-69128327-3	chr3	69128223	69128423	+	786.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1231.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	4.19983200666784	4.32795287366944	4.20046276789321	4.62074133630391	4.0177917026373	4.00801482778293	4.08633455914232	4.59515448883781	-0.402084064930831	0.356973843496294	0.663238634370609
Merged-chr14-55015820-1	chr14	55015720	55015920	+	706.0	f1_balb.idr	intron (NM_026890, intron 1 of 10)	intron (NM_026890, intron 1 of 10)	366.0	NM_026890	68966.0	Mm.21214	NM_026890	ENSMUSG00000022204	Ngdn	1500001L15Rik|Ngd|neuroguidin	neuroguidin, EIF4E binding protein	protein-coding	4.10651860162197	4.3647023989278	4.15670230376962	4.0548998545325	4.1512645149804	4.28317664424551	4.35934679368637	4.63424391777342	0.471515891950639	0.241561602962603	0.552079164835131
Merged-chr7-127213585-4	chr7	127213478	127213678	+	804.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_017461)	TTS (NM_017461)	1970.0	NM_016754	17907.0	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	3.56406501329335	3.84749891672519	3.38567698130839	3.45660125970394	3.48265421876028	3.73742819369737	3.49436967522443	3.90277811014228	0.277626416691854	0.58464408476326	0.817725463637045
Merged-chr1-75168657-4	chr1	75168544	75168744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159906)	promoter-TSS (NM_001159906)	-2.0	NM_001159905	68818.0	Mm.32646	NM_026846	ENSMUSG00000026197	Zfand2b	1110060O18Rik|C81256	zinc finger, AN1 type domain 2B	protein-coding	6.86320206287168	7.17932456326771	6.76232660061837	6.88749636111165	7.03590900996999	7.1864816893837	7.25198674127059	7.07755575971382	0.279992317324686	0.159126690961698	0.446416472330235
Merged-chr12-30266025-3	chr12	30265919	30266119	+	695.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324520, intron 8 of 16)	intron (NM_001324520, intron 8 of 16)	107356.0	NM_172951	268534.0	Mm.279765	NM_172951	ENSMUSG00000020672	Sntg2	2210008K22Rik|9530013L23|BB121248|G2syn|Syn5	syntrophin, gamma 2	protein-coding	3.51950825620245	3.62956948252114	3.95782919960716	4.09096066971191	3.39673422740644	3.51371040048774	3.32300034600916	3.57474989584611	-1.21719927840108	0.0205697407043054	0.130493188377162
Merged-chr4-134099440-4	chr4	134099341	134099541	+	939.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C2|LTR|ERVK	-3142.0	NR_045571	67586.0	Mm.282029	NM_026257	ENSMUSG00000012126	Ubxn11	4930506L07Rik|D4Bwg1540e|Soc|Soci|Ubxd5	UBX domain protein 11	protein-coding	4.9710700849628	5.26103030913125	4.57316738328996	4.37424204176736	5.67067181997027	5.56839716672505	5.70166017642656	5.49611827340477	1.44102235381986	3.31301010515228e-05	0.000791065904980321
Merged-chr7-135652409-4	chr7	135652337	135652537	+	945.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015548)	promoter-TSS (NR_015548)	-123.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	4.87453312840484	4.71250144356688	4.50365130230742	4.7292523962619	4.40846919937264	4.59066023655571	4.39499614859051	4.7000178579308	-0.415059148583829	0.247910187787208	0.559072307971538
Merged-chr9-55110645-4	chr9	55110535	55110735	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38734.0	NM_180600	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	5.25163288906391	5.47401691463547	4.61239554671514	4.86814117404635	4.77314442432384	4.79363343267224	5.04763096504481	5.00304675494904	-0.357481250694083	0.328881516672951	0.640144325858488
Merged-chr7-130547373-4	chr7	130547283	130547483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162855)	promoter-TSS (NM_001162855)	-2.0	NM_001162855	67872.0	Mm.21714	NM_001162855	ENSMUSG00000040331	Nsmce4a	2410003A14Rik	NSE4 homolog A, SMC5-SMC6 complex component	protein-coding	6.49075854898886	6.62737174623644	6.6855162868849	6.65760270869321	6.82116169255985	6.68620593774954	6.93047434271494	6.53849510497393	0.193890026726529	0.352068215662179	0.659279248707432
Merged-chr1-191086723-4	chr1	191086629	191086829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11685.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	6.20932748075088	6.55981356664743	6.21042554921851	6.01875644393102	6.50951259173081	6.40609017946316	6.09720472759685	6.28284360584005	0.12397686922603	0.617083728885842	0.835320866104708
Merged-chr8-46795514-4	chr8	46795429	46795629	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 2 of 7)	B1_Mur3|SINE|Alu	55784.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	4.51345168487033	3.82133827137658	4.51419757189569	4.30060424778471	4.46780016745024	4.44099448735156	4.10725453055207	4.17164647036048	-0.00216660401628344	0.996020507516105	0.998543856884531
Merged-chr12-3759672-4	chr12	3759584	3759784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027869, intron 16 of 20)	intron (NR_027869, intron 16 of 20)	-47296.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	6.46411669751214	6.83087988356355	6.39512126336164	6.72075416373102	6.4150359578672	6.31448456148222	6.23014396567671	6.57460343429585	-0.342388653213326	0.134326100266089	0.407935723647066
Merged-chr15-99876956-3	chr15	99876870	99877070	+	667.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57D|LTR|ERV1	-1514.0	NM_001113545	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	3.6972338445405	3.59017145490267	3.54766093298336	3.35623714701713	3.78045529919113	3.42891977174937	3.42400021925506	3.24926835077002	-0.161457588455046	0.761625167628418	0.906580785421304
Merged-chr3-60559980-3	chr3	60559902	60560102	+	907.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	58823.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.01707526205445	3.85119412249767	4.71249099059512	4.65256441287502	3.39595519931889	3.53734946922628	3.67409308057751	3.91420339254678	-2.05002403702407	0.000146463358712482	0.00279806953355422
Merged-chr5-118381534-4	chr5	118381410	118381610	+	975.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136283.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	4.3436778079505	4.6173995441319	4.15654684185197	4.26029663755491	4.00638887085863	4.55912766292088	4.56071065258736	4.25122941697313	0.0036695866443014	0.992970849257411	0.997455796658417
Merged-chr5-81107621-4	chr5	81107502	81107702	+	909.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 2 of 27)	intron (NM_198702, intron 2 of 27)	86009.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	5.01677025808706	4.6298706000068	5.14291123157565	5.33180257685564	4.98696685721185	4.6303386549377	5.02535750548902	4.7193638055024	-0.413344389103514	0.251174194988969	0.562529986316778
Merged-chr4-148626428-4	chr4	148626347	148626547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003898, intron 1 of 6)	CpG	549.0	NR_027864	230908.0	Mm.22453	NM_145556	ENSMUSG00000041459	Tardbp	1190002A23Rik|C85084|TDP-43|Tdp43	TAR DNA binding protein	protein-coding	5.12950366586419	5.14332054850559	5.68512550931126	5.03889165837602	5.4704885496562	5.41399777983111	5.94763018868214	5.79392040105455	0.714763846325404	0.02413269283108	0.144969275299472
Merged-chr7-102233815-4	chr7	102233738	102233938	+	978.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111937, intron 2 of 5)	intron (NR_111937, intron 2 of 5)	10810.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	5.53344950015791	5.7190542962028	5.86969831684674	4.61860173076946	6.08483123102343	5.88773815071427	4.97526572094025	5.41595246411427	0.246579811013351	0.549180752166258	0.797888160484203
Merged-chr6-52158291-4	chr6	52158202	52158402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311118)	promoter-TSS (NM_001311118)	15.0	NM_010449	15394.0	Mm.197	NM_010449	ENSMUSG00000029844	Hoxa1	ERA1|Hox-1.6	homeobox A1	protein-coding	5.85698895653874	5.86529187654249	5.78338254563223	5.75420704552931	6.36713348803629	6.01027622228463	6.23490939454745	6.01248634471598	0.57433116795509	0.0177189120243902	0.117903565390677
Merged-chr10-93124352-5	chr10	93124199	93124399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36577.0	NM_146239	237459.0	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	5.74974203241472	6.07466119329185	5.69718336373227	5.62815452709361	6.15721799391174	6.3638564675143	5.74737061080027	6.34191259073357	0.597467899024299	0.0274084782003727	0.157816177426445
Merged-chr2-62461008-4	chr2	62460892	62461092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22661.0	NM_008100	14526.0	Mm.45494	NM_008100	ENSMUSG00000000394	Gcg	GLP-1|Glu|PPG	glucagon	protein-coding	5.13135316753883	5.526260547678	4.99318763761417	4.69348649933034	5.55128711220359	5.13361379962855	5.07393242840123	5.19286589682631	0.275639386413218	0.436404368770018	0.72511335456143
Merged-chr12-59219895-4	chr12	59219804	59220004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033156)	promoter-TSS (NM_001033156)	-421.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	8.52595444033399	8.64762934149173	8.59389127549042	8.60597785319661	8.57878480473591	8.75763892370472	8.68186096595675	8.58838774689159	0.0704674206394348	0.625811398757592	0.840115981143047
Merged-chr11-69420007-4	chr11	69419900	69420100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081330)	TTS (NM_001081330)	-6325.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	5.75865763580021	5.96496362672949	5.52383967144354	5.24013482389619	5.81614817609569	5.86072924884447	5.865267272872	5.43066883842883	0.197976971179071	0.512800003953577	0.776017039843318
Merged-chr7-75880906-4	chr7	75880823	75881023	+	798.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32585.0	NM_029652	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	4.21122977685254	3.86540808096224	4.45258659286251	3.72963971981223	4.07558696943385	4.09449989767145	4.31748031584348	4.29452048941482	0.298567775699997	0.509484757893249	0.774067760028004
Merged-chr16-78267677-4	chr16	78267587	78267787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-12233.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	7.18693686196716	6.40605787136302	7.25124247263272	7.2505769051164	7.01303322918104	7.16686522342034	6.73524657723601	7.03457488886089	-0.103794301788199	0.677108607706954	0.86743056349761
Merged-chr7-88303697-4	chr7	88303592	88303792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 5 of 6)	intron (NM_009982, intron 5 of 6)	25607.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.67014971998133	6.516256946329	6.93516256976197	6.98977675603462	5.97461531992467	5.98194442208515	5.6547732089759	5.84958119807049	-1.38933407273759	1.51937040066116e-08	7.78037883083889e-07
Merged-chr9-4380768-4	chr9	4380693	4380893	+	876.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145609, intron 1 of 2)	intron (NM_145609, intron 1 of 2)	4241.0	NM_145609	78100.0	Mm.206549	NM_145609	ENSMUSG00000041124	Msantd4	8430410K20Rik|Mysantd4	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding	4.21528560330282	4.21974202612658	4.83909412940339	4.8178120072681	4.36443909955399	4.29190277841744	4.33898191303807	4.44243047394231	-0.478710363278951	0.246414265640232	0.557673692994975
Merged-chr14-8214849-4	chr14	8214741	8214941	+	988.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001305936, exon 1 of 3)	5' UTR (NM_001305936, exon 1 of 3)	339.0	NM_001305936	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	5.21073045018954	5.26949832466972	5.30613399948362	5.64698941168154	5.56541862499264	5.62198893930332	5.11950671977938	4.87476460854531	-0.0823602347502496	0.806545480559191	0.925439675100154
Merged-chr2-6273563-4	chr2	6273461	6273661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-49196.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	7.14510006116061	6.79221840211992	6.72738128335049	7.03709858725498	6.82298517730451	6.7615756592684	6.78011633038877	6.83767876528035	-0.196082050761715	0.337326764181018	0.647045967113309
Merged-chr11-30799679-4	chr11	30799576	30799776	+	665.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134013, intron 3 of 46)	B3A|SINE|B2	27901.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	3.98749679260535	4.05683207887378	3.98809263406275	3.82263219480356	3.88163795332187	3.72798119037028	3.97086079817392	3.98568285809167	-0.172837084826776	0.691878467245002	0.87467626526963
Merged-chr18-68299322-4	chr18	68299221	68299421	+	892.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153794, intron 1 of 3)	intron (NM_153794, intron 1 of 3)	1012.0	NM_153794	108654.0	Mm.125857	NM_153794	ENSMUSG00000038121	Fam210a	4933403F05Rik|AA987140|AV134576|AW491926	family with sequence similarity 210, member A	protein-coding	3.6089924254228	4.00958143646659	3.9542340973234	3.98594079097145	4.29222344665099	3.91353309072821	4.28547507317162	4.13966102214264	0.694922673992461	0.113980845599455	0.373450486813086
Merged-chr5-53355262-3	chr5	53355161	53355361	+	771.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88155.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	3.84819768268808	3.90832965964326	4.11951347599742	3.64195865138162	3.86902405690281	3.80574087166361	3.88190759916038	3.84652656403228	-0.0706423682936848	0.876701619942489	0.953762068317638
Merged-chr8-121591507-4	chr8	121591416	121591616	+	945.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026160, intron 1 of 3)	intron (NM_026160, intron 1 of 3)	1048.0	NM_026160	67443.0	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	4.83249178367456	4.83637249062735	4.5906071438716	4.82220719774223	5.03966595652938	4.63168573337742	4.73504562669426	5.3129503407156	0.370722440879433	0.293258529499756	0.605864478311413
Merged-chr13-95891245-4	chr13	95891111	95891311	+	916.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	711.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	4.20472450095147	4.20961803441361	4.43611991301867	4.26800486079505	4.50249763916318	4.68933067412984	4.23649737589018	4.85905648413817	0.705408537054634	0.0684180206873339	0.279351017868625
Merged-chr2-73463843-6	chr2	73463778	73463978	+	931.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-9989.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	4.45341876646706	4.36183314005867	5.37534677967172	4.88986538235353	5.04682117931636	4.77498912596653	5.01977977457574	4.9766332864598	0.251683176037285	0.527910218834054	0.784584834242773
Merged-chr3-87351229-4	chr3	87351093	87351293	+	974.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6688.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	5.46916147077145	5.66905370041506	6.05272178972085	5.35123136888057	5.83662263678077	5.87126515360019	5.85658941001452	6.02880557270466	0.41363063487594	0.143658754608327	0.422065835669136
Merged-chr12-79841531-4	chr12	79841433	79841633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83200.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	6.95688931996647	6.82118549392139	6.63083609231032	6.96762362302815	6.55637388469143	6.97463379645019	6.84571756549065	7.08378504805008	0.0179933202833867	0.934576153028178	0.976356212091203
Merged-chr10-42275461-6	chr10	42275312	42275512	+	982.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019740, exon 2 of 4)	exon (NM_019740, exon 2 of 4)	1330.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	4.60172399947969	4.44177302365923	4.82564101079617	4.56943283355861	4.67145329756019	4.35806712643465	4.54022927540607	5.12329895287693	0.202789119532811	0.596631837797669	0.824854959359042
Merged-chr3-52270083-4	chr3	52270009	52270209	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019739, intron 1 of 2)	intron (NM_019739, intron 1 of 2)	1772.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	5.26028120655922	4.87953821071479	4.93978158829314	5.08706036232622	5.07275966815144	4.87899416152236	5.05354021341238	5.25751556583723	0.0455442270353773	0.885418181694621	0.956984644600969
Merged-chr8-83260597-4	chr8	83260494	83260694	+	830.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111304, intron 15 of 20)	intron (NM_001111304, intron 15 of 20)	-29754.0	NM_009463	22227.0	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	3.84408622559016	3.87581326816024	3.67601270228694	3.84198585645039	3.98593487318198	4.11686337105067	4.06623143511302	4.08203899642339	0.671485153115763	0.113547461731398	0.37257155665787
Merged-chr2-57115395-4	chr2	57115290	57115490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013613)	promoter-TSS (NM_013613)	-352.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	5.15171338169965	5.40171011925747	5.04731843756693	4.83281301311008	5.59931998652958	5.15141306559973	5.45014381300997	5.54980180986415	0.62489255934813	0.0468545051747097	0.22251943510687
Merged-chr3-19562648-4	chr3	19562545	19562745	+	764.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163536, intron 2 of 4)	intron (NM_001163536, intron 2 of 4)	31398.0	NM_001163537	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	3.70406902808546	3.65055403943631	3.29023855313677	3.65763951959147	3.80954454919106	3.65862232216228	3.83122543231862	3.65078902901826	0.463444016504399	0.339402417441797	0.648737202156065
Merged-chr14-55822670-4	chr14	55822581	55822781	+	974.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2114.0	NM_001168346	73181.0	Mm.27908	NM_023699	ENSMUSG00000023411	Nfatc4	3110041H08Rik|AW107667|AW546455|Nfat3	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4	protein-coding	4.84776107932814	5.22632128216269	4.77078892064592	5.07020501429621	5.00911654721103	4.73398181190329	4.78776111867846	5.14590354258394	-0.129896277928974	0.700192757221612	0.879054781621322
Merged-chr4-11579595-2	chr4	11579495	11579695	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256142)	promoter-TSS (NM_001256142)	-67.0	NM_001256142	100503583.0	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	3.48142943091036	3.46836835656961	3.80550288623888	3.67374968937086	3.4812365587452	3.32721367195012	4.00456820730437	4.02116784543159	0.384741382182439	0.471522257622156	0.749935186197728
Merged-chr18-73752199-4	chr18	73752092	73752292	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053255, intron 1 of 3)	intron (NM_053255, intron 1 of 3)	2287.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	4.77855741482141	4.32533555827393	4.36002562741604	4.52069078543571	5.0352294750054	5.54738844488043	5.51163814089013	5.09368380391305	1.58275838201037	8.03196335100586e-06	0.000226508367417292
Merged-chr16-11144119-4	chr16	11144022	11144222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027502, intron 19 of 22)	LSU-rRNA_Hsa|rRNA|rRNA	-9590.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	7.66480352260116	7.73712897250929	7.95396324758537	5.26586531191905	7.47809620227126	7.59523695449573	7.51868900419407	8.21912025752315	0.313878635108696	0.654361441840841	0.855619882409832
Merged-chr15-100461872-4	chr15	100461780	100461980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7131.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	7.65770565961286	7.46783989803222	7.32163379877506	7.07605343356398	7.7061076816763	7.95356393347325	7.62147123933984	7.49647496813445	0.419684180226847	0.0422475106024586	0.208510300733074
Merged-chr2-36234654-4	chr2	36234549	36234749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 2 of 10)	MIRb|SINE|MIR	4223.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	6.75768786368787	6.26092218392621	7.04202824730952	6.87375350560995	6.58728859587171	6.62787987973282	6.86055050675406	7.17833186160313	0.0948111412759797	0.710910801727775	0.884240356833917
Merged-chr10-80692966-4	chr10	80692831	80693031	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	8889.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	5.49407081713269	5.28295883253567	5.15234225744195	5.16232331295517	5.02146055582923	5.26057293938957	4.83631221560104	5.41392397437746	-0.235652964513767	0.458901094972558	0.74164160114097
Merged-chr13-95887727-3	chr13	95887608	95887808	+	711.633362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	4214.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.5816828008361	3.97200764099684	3.85221798799191	3.96978775437362	3.60371096943746	3.92230840480836	3.62718915211561	3.84993751093778	-0.322402230493176	0.494399564438786	0.765035470275187
Merged-chr7-87925614-4	chr7	87925534	87925734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081414, intron 4 of 9)	intron (NM_001081414, intron 4 of 9)	341466.0	NM_001143834	108071.0	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	6.17559624580786	5.93763249295864	6.65904101407554	6.52686183654783	5.9953083109692	5.88743664628024	5.83707820790497	6.09126122465082	-0.619546250767599	0.0199617686747359	0.127852753039306
Merged-chr11-106733994-4	chr11	106733865	106734065	+	865.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger12|DNA|TcMar-Tigger	-17261.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	4.36083113238281	4.01965517374935	4.18710096196048	4.71563888951011	4.06000374292264	4.10918158095567	4.07309138352113	4.35871475606856	-0.523298387118148	0.232558604522326	0.542155889072363
Merged-chr16-10500916-4	chr16	10500803	10501003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302619, intron 2 of 19)	MTEb|LTR|ERVL-MaLR	11122.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	5.5843807192305	5.29975780323815	5.26257879666452	5.27243069700459	5.74913700970098	5.50442059136207	5.76950795142985	5.63213913464338	0.553264589399807	0.0427350591375143	0.210129785462084
Merged-chr8-39619010-4	chr8	39618872	39619072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 5 of 9)	intron (NM_001113326, intron 5 of 9)	23706.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	5.60743745655223	5.29851986688617	5.39998165749916	5.83399894949749	5.35744077142175	4.98036730963975	5.3153662955352	4.92187621407225	-0.709857618516001	0.0268519664165106	0.155780738349564
Merged-chr2-173276601-4	chr2	173276531	173276731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022995)	promoter-TSS (NM_022995)	-98.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	7.10818141692521	7.17700781447619	7.1651426699701	7.52246605886968	6.55995275125701	6.57232303337872	7.18221445212179	6.40727604914158	-0.75902194488603	0.001839354478695	0.0219192051630724
Merged-chr8-36249521-4	chr8	36249418	36249618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081150)	promoter-TSS (NM_001081150)	-2.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	8.73663102951473	8.95012046194126	8.89932930974481	8.58390832458383	9.07488374187443	8.98708276851746	9.30009789569929	8.75381231327846	0.308065777159232	0.0805910540654051	0.307896356216376
Merged-chr19-42045989-4	chr19	42045881	42046081	+	910.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020033)	TTS (NM_020033)	130.0	NM_026152	67432.0	Mm.24196	NM_026152	ENSMUSG00000025176	Hoga1	0610010D20Rik|Dhdpsl|Npl2	4-hydroxy-2-oxoglutarate aldolase 1	protein-coding	3.721439538016	3.70811394000306	3.36927460850047	3.77418711979162	3.35701289209172	3.99043609518083	3.48471279919956	4.03710655591827	0.273129667611885	0.610894459752573	0.832048540963038
Merged-chr10-96706878-4	chr10	96706785	96706985	+	941.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89884.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	4.39628749488407	4.47540280974811	4.83112073157625	5.11968250633629	4.96116635371493	5.14213767552787	4.97886684140816	4.86424741143608	0.451199022152712	0.232553664554279	0.542155889072363
Merged-chr10-10408342-4	chr10	10408246	10408446	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 13 of 36)	intron (NM_001127353, intron 13 of 36)	63968.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	5.4778695310207	5.2961163422137	5.24736605721547	5.51652839663912	5.3820073092931	5.29021758159763	5.31273519398049	5.14494032949914	-0.195644812726897	0.496497172544166	0.766462679028389
Merged-chr8-11100479-3	chr8	11100372	11100572	+	941.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92042.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	3.83670350942835	4.13854056485328	4.22975330935581	4.17636892900985	3.60077290980489	3.53727742340517	3.71618569697902	3.55149554404312	-1.50726698487317	0.00155511368197925	0.0192373021844979
Merged-chr12-17545440-2	chr12	17545341	17545541	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013614, intron 1 of 11)	intron (NM_013614, intron 1 of 11)	568.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	5.43869848258948	5.24065200553176	5.57646749221745	5.17859477197337	5.54821997578167	5.670470199436	5.49566875738265	5.7643207682462	0.46910857149161	0.0948044506673667	0.336870108015143
Merged-chr13-21362843-4	chr13	21362741	21362941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016684)	promoter-TSS (NM_016684)	21.0	NM_016684	22758.0	Mm.24124	NM_016684	ENSMUSG00000036721	Zscan12	2510038J07Rik|FPM315|Zfp96|mKIAA0426|zfp-96	zinc finger and SCAN domain containing 12	protein-coding	6.3769879775174	6.33007604444742	6.64457698358964	6.78524473898333	6.51750877943345	6.35644705106359	6.95997815882003	6.4455893329547	0.0483130023550377	0.845010078296806	0.941296634684784
Merged-chr13-5614392-4	chr13	5614284	5614484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	243708.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	8.00318747627419	6.96082721928784	8.25629587069162	7.74583288773872	7.41989909686468	7.33690857628309	8.0033887530901	7.26031453622763	-0.369064682596885	0.197657796237455	0.499044730396766
Merged-chr7-63908863-4	chr7	63908750	63908950	+	907.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-8007.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	3.99407969726468	4.06356552940909	4.08547876625246	3.74629513144677	4.16193465165866	3.96629763279669	3.92996019038333	3.54904942697556	-0.114349442321254	0.807847119999295	0.925894979224023
Merged-chr17-27970420-3	chr17	27970323	27970523	+	689.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	61117.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	3.50473301619493	3.83952280751175	3.79401106815313	3.84847069447728	3.13226928168762	3.0952347146889	3.05225086032891	3.33052024367257	-2.26344805751538	0.000118792676197814	0.00233901629296934
Merged-chr11-62456889-4	chr11	62456745	62456945	+	827.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177229, intron 1 of 8)	CpG	487.0	NM_177229	20185.0	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	3.67982593772942	3.65127557730721	3.52865533012691	3.33781538361119	3.15622443854789	3.47168990543965	3.40370487469537	3.62960337767981	-0.435831468324811	0.412767617259275	0.707787832411092
Merged-chr10-22354362-4	chr10	22354162	22354362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-7632.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	7.03578228117001	7.39635353609776	7.16088237615134	6.53370688247915	6.57597374251329	7.04965075480799	6.5856494031075	6.64731277084062	-0.46981968527588	0.0677645914176527	0.277838185299054
Merged-chr15-79446011-4	chr15	79445910	79446110	+	842.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3867.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	4.31973108677709	3.97938676283516	4.14540307366506	4.01379963280152	4.23680351322589	4.40625926435982	4.25935738987986	3.99423498611254	0.303280293174448	0.459019996350423	0.74170765693035
Merged-chr10-68673672-4	chr10	68673577	68673777	+	748.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	-50069.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	3.68410935855501	3.82717500500296	3.79401694632222	3.84448536323725	3.96214269149868	3.85909369030075	3.9709203686784	3.94019612726367	0.399302544173049	0.356736419442362	0.663170665190731
Merged-chr6-51509425-4	chr6	51509324	51509524	+	944.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14479.0	NM_001361582	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	4.84422004712788	4.69737243880159	4.60233639347835	5.11158246395156	4.98926452521215	5.30904850206808	4.58163628466524	4.84178928604231	0.219509542636456	0.552837125533317	0.799873237323185
Merged-chr9-61243570-4	chr9	61243471	61243671	+	928.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1ME|LINE|L1	50238.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	5.31050534143924	6.0309310330748	4.90472645539039	4.55554534673793	5.43618540522552	5.62264986161769	4.62101438978803	4.68665890825962	-0.304754933681751	0.668734331861704	0.863209831388208
Merged-chr7-67426298-3	chr7	67426197	67426397	+	846.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53439.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	4.47968601234317	4.17750384356297	4.23435680696445	4.6088321424727	3.85831663045011	3.93346632928062	4.17004291911948	4.43967531617791	-0.697660397058161	0.110286665996338	0.366706899563385
Merged-chr15-27673292-4	chr15	27673177	27673377	+	925.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	8265.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	4.81012803782136	4.73680992397133	4.55462775650218	4.69342826240414	4.40231580772419	4.07238135063604	4.45060976896686	4.73968858857357	-0.585502182318893	0.126035939906038	0.394421286725518
Merged-chr12-41288761-4	chr12	41288653	41288853	+	732.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	197304.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	4.05923986566815	4.26980391022393	3.9594695963662	4.253557924712	4.37829431700374	3.9715519808397	4.13471508825243	3.84873868354433	-0.0989140871874744	0.821172919708148	0.931522897539425
Merged-chr2-68860623-3	chr2	68860540	68860740	+	779.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172856)	promoter-TSS (NM_172856)	-801.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	3.89836099679806	3.78469843147633	3.94507311482755	3.72835696422445	3.69179123500437	3.63581292680693	3.8820459482012	3.79916325542633	-0.23400729366234	0.606184790582087	0.829351704182035
Merged-chr14-51250504-3	chr14	51250408	51250608	+	942.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5604.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	3.73001713569508	3.44709458451481	3.73059961048461	4.01666066173881	3.27168383799847	3.12676069785222	3.34906887868283	3.23162821794724	-1.79000178204844	0.00152125695934156	0.0188841208770444
Merged-chr17-31090004-4	chr17	31089894	31090094	+	938.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	32300.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	4.6273426630591	4.79519809739477	4.81056088197795	5.01085810281249	4.33695138891273	4.49806092968783	4.4842281808873	4.36533609239842	-0.917260352534612	0.011039858205397	0.0846719224458251
Merged-chr19-5425600-3	chr19	5425486	5425686	+	891.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024176)	promoter-TSS (NM_024176)	442.0	NM_001256515	107242.0	Mm.329658	NM_134149	ENSMUSG00000047423	AI837181	Bles03|N28173	expressed sequence AI837181	protein-coding	3.94564114001177	3.69691681875017	3.64607370769093	3.25908172184373	3.92791254993066	4.07024534530666	3.73823713238589	3.52671480455854	0.539434913147949	0.297495811096624	0.609623334606199
Merged-chr3-84228717-4	chr3	84228619	84228819	+	969.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271726, intron 1 of 11)	intron (NM_001271726, intron 1 of 11)	-7842.0	NM_030706	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	4.95022961215817	4.82619940583645	4.75941276238153	5.34946788142144	5.03505534148307	5.19301495437847	5.09248210579559	4.83633685040927	0.0511969010488126	0.88258728596692	0.95575354370667
Merged-chr10-37210466-4	chr10	37210340	37210540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-71514.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	5.49484330088754	5.33709017599898	5.78427978724423	5.37216356860299	5.2462521048847	5.22675174851211	5.46815001205424	5.49193389141786	-0.241798933703415	0.408128876621816	0.704191133871672
Merged-chr9-118647645-2	chr9	118647549	118647749	+	646.049988	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	40940.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.1778064296661	3.16649796216358	2.92168913574218	3.16117939162648	3.08456042991806	3.28974199804572	3.10757051081411	3.39017126628795	0.404273861462254	0.472721459745685	0.750782979298884
Merged-chr10-81137440-4	chr10	81137348	81137548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	CpG	1177.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	9.0941977141607	9.24802310280983	9.05503949223891	8.96869934694443	9.06847824212518	9.32906939798179	9.12330985963453	9.03216368367004	0.0595305647091812	0.69470505856834	0.876091214911152
Merged-chr13-9029905-2	chr13	9029805	9030005	+	717.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-33893.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	3.2919650595509	3.41161030348429	3.4583727188769	2.8548917938343	3.45813438564305	3.40698793751729	3.3368702099597	3.29065394468464	0.391257822563699	0.497473132951578	0.767090702736496
Merged-chr10-57842009-3	chr10	57841902	57842102	+	806.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47458.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	3.3287523995698	3.43234348567928	3.3292050745545	2.95906979432819	3.26688449754347	3.38544829345958	3.31611289397537	3.27010936494614	0.166229526838601	0.764391955434428	0.907642922610178
Merged-chr11-5059981-3	chr11	5059880	5060080	+	625.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001190408)	TTS (NM_001190408)	1852.0	NM_145216	75668.0	Mm.374836	NM_145216	ENSMUSG00000034209	Rasl10a	2210403B10Rik|AI852688	RAS-like, family 10, member A	protein-coding	3.19775217351043	3.13727172481986	2.8648905258369	2.91325107405487	3.36990981337667	3.36981238382107	3.39986058354983	3.25407000750373	1.23314232378571	0.0259872297952494	0.152430109429376
Merged-chr1-127786052-4	chr1	127785954	127786154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028399, intron 2 of 8)	intron (NM_028399, intron 2 of 8)	11890.0	NM_028399	72949.0	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	5.65280171987526	5.97402797749882	5.70943818423858	6.12871911849367	5.95970530259841	6.13193785861027	6.35584274191715	6.07995510175179	0.364677141732201	0.1666192409578	0.457960964592688
Merged-chr11-98937175-3	chr11	98937081	98937281	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177302)	promoter-TSS (NM_001177302)	-515.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	3.63928192299949	3.85001663784546	3.53316407627383	3.29460393578641	3.5718756588872	3.46924892403057	3.57311145626062	3.58556360998196	-0.110069329479127	0.829761604634893	0.934618333601978
Merged-chr19-56740332-4	chr19	56740226	56740426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17954.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	6.71824599287507	6.92484026396361	6.89805328668645	6.71971331608242	6.88526109717875	6.88097516925768	6.42475009030791	6.4711499509666	-0.177264446868303	0.42513932553994	0.716728453911735
Merged-chr14-31435324-5	chr14	31435251	31435451	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 1 of 8)	CpG	749.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	4.70403637686111	4.75000450825529	4.94705415182234	4.88820654944938	4.23678461406833	4.58460721043504	4.47821872836822	4.87913341515284	-0.588818159323899	0.111887706492141	0.369669011226742
Merged-chr1-33906263-4	chr1	33906172	33906372	+	859.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	1349.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	4.16012585359099	4.18748534071182	4.48850374113327	4.52830767336784	4.22862927615883	4.13618512998073	3.70848692127439	4.1106802881136	-0.736457290632981	0.092870958551946	0.33347434589966
Merged-chr7-127288144-4	chr7	127288034	127288234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8126.0	NM_001253873	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	6.26231842476466	6.53283993952686	6.03548573093791	5.94870231576299	6.23861726012955	6.58152965331884	6.43935760410336	6.13980356774949	0.225237518038684	0.378997390270334	0.68153833836951
Merged-chr8-13157343-4	chr8	13157242	13157442	+	878.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-1819.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	4.62506551116086	3.87622151080696	4.17917876931347	4.38479806645933	4.19564716315952	4.40087659507086	4.34039136042168	4.39901015198132	0.0858609759099858	0.838364757685431	0.938683148041454
Merged-chr13-98261849-2	chr13	98261749	98261949	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178918, intron 1 of 12)	intron (NM_178918, intron 1 of 12)	1143.0	NM_178918	105372.0	Mm.28221	NM_178918	ENSMUSG00000041747	Utp15	AW544865	UTP15 small subunit processome component	protein-coding	3.0469493873985	2.94692224313258	2.98414169522993	2.81523906536043	3.14472584414377	3.09417493646827	3.2591355330783	3.27123006602834	1.03595496230446	0.0654027275159519	0.272266249099056
Merged-chr9-85331726-4	chr9	85331630	85331830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4580.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	6.40147545560717	6.39541953920611	7.24800298753044	6.99934723833467	6.43741826976647	6.40310181052063	6.84162500918073	6.30174065533739	-0.439030569460329	0.114429426359452	0.374137443217246
Merged-chr11-55078021-1	chr11	55077921	55078121	+	758.0	f0_balb.idr	exon (NM_177471, exon 1 of 7)	exon (NM_177471, exon 1 of 7)	110.0	NM_177471	52570.0	Mm.22361	NM_177471	ENSMUSG00000049588	Ccdc69	2210021E03Rik|D11Ertd461e	coiled-coil domain containing 69	protein-coding	3.82841122974121	3.49152755043571	4.16171819990451	3.60327245358063	3.56589352555208	3.49429794382779	3.66253098342231	3.72780276314287	-0.527730479602676	0.299927849490395	0.612179983023751
Merged-chr13-42051299-2	chr13	42051194	42051394	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_007772)	promoter-TSS (NM_007772)	-727.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	6.76525713394796	7.5233703542726	6.94051640145252	6.6910255467239	7.4860510702141	7.49983589089114	7.34487169931291	6.97559265757389	0.438791398714547	0.0817079290292761	0.310197273474577
Merged-chr5-100583309-4	chr5	100583203	100583403	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11098.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	4.56804214427203	4.85879469685933	4.87444675916061	5.10170782645908	5.24482099549162	5.23056244774639	5.54721436617577	5.18135416564744	0.795607782752349	0.0165931771142119	0.112674114514937
Merged-chr10-71346871-4	chr10	71346767	71346967	+	859.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347191)	promoter-TSS (NM_001347191)	-896.0	NM_001347191	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	3.38450759699752	3.65578502140687	3.94561709090386	4.42722343635468	3.87535541335541	3.81396038830752	3.56630508950101	3.69280019455912	-0.51723772018325	0.355064244338355	0.661703876204634
Merged-chr7-30280912-4	chr7	30280820	30281020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146186)	promoter-TSS (NM_146186)	-499.0	NM_146186	233064.0	Mm.271677	NM_146186	ENSMUSG00000037020	Wdr62	2310038K02Rik|b2b1508Clo	WD repeat domain 62	protein-coding	7.47095675857839	7.44869486653116	7.39840436337984	7.24485703458909	7.14124244738285	6.90063650866638	6.84003009509449	7.28408870962053	-0.446788955370861	0.0241236918787028	0.144927436211528
Merged-chr11-111165162-4	chr11	111165103	111165303	+	940.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99039.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	4.27453408873922	3.92493138229778	4.22904032585416	4.04254917159491	4.51183909775125	4.356843080447	4.53659642251317	4.55552391182369	0.913706192158095	0.0172063051639155	0.11557304852905
Merged-chr7-43313257-4	chr7	43313151	43313351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357811)	promoter-TSS (NM_001357811)	49.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	8.20806318027271	8.16219012768201	8.11323595485883	8.06440250118674	8.02010868739196	8.1933818307847	8.03669931602571	7.71464524898759	-0.171389704804143	0.315428613155864	0.627235459025596
Merged-chr9-37247623-4	chr9	37247509	37247709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145960, intron 1 of 18)	intron (NM_001145960, intron 1 of 18)	8129.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	7.34363446795029	7.21091908615249	7.53088113982561	7.3095406746553	7.41044243087001	7.16537914136765	7.10240778613867	7.09725793659784	-0.190301432000765	0.321607215111749	0.633233286881578
Merged-chr15-4727092-4	chr15	4727005	4727205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016704)	promoter-TSS (NM_016704)	-105.0	NM_016704	12274.0	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	6.55168195539624	6.12491551812298	6.29722461936703	6.68546651543139	5.74349888049292	5.66348695263579	5.82597689998286	5.99405412126171	-0.982544833796067	0.000142306690310517	0.00272951978162552
Merged-chr3-37348541-4	chr3	37348468	37348668	+	758.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008006)	promoter-TSS (NM_008006)	-85.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	3.91664417759509	3.76078490433887	3.86925182499519	3.98501915051499	3.55393826284942	3.99036743815479	3.58541613493446	3.91485316918997	-0.358290649276812	0.44491086586778	0.73115209509395
Merged-chr13-23524818-4	chr13	23524708	23524908	+	866.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6236.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	3.88074460318735	3.7304275714635	3.61174545941461	3.86572124624826	4.03829406557369	4.0505278972219	3.76494650813482	3.77796765456925	0.385021109996765	0.394520718938275	0.693663766353963
Merged-chr2-31075363-4	chr2	31075277	31075477	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	21123.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	5.4835329307081	5.42465177741234	5.50971725373622	5.40184643904766	5.11889268309158	5.05413898097916	4.85140427484134	5.02551954667152	-0.79576277991451	0.0072372755385351	0.0624111988802266
Merged-chr5-34514020-4	chr5	34513905	34514105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139064)	promoter-TSS (NM_139064)	-26.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	7.97158035554488	8.01853738441109	7.88196621218551	7.6889787072079	7.74154791608458	8.03002101374113	7.8511387432311	7.61988370225133	-0.0955175009172432	0.598058724706386	0.825700950899405
Merged-chr17-86971119-4	chr17	86971028	86971228	+	804.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	8017.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	4.04639345120494	3.5973698268002	4.04700773897142	3.85596716898421	4.53098066951062	4.21961432157919	3.65034933525366	4.17958396695453	0.768879505733583	0.111728146204846	0.369394663881962
Merged-chr18-88911070-3	chr18	88910966	88911166	+	791.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16859.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	3.1674297295215	3.19915008235634	2.95192619658926	3.0188584247486	2.69157571866694	2.64555695957686	2.68495067099163	2.61790745224785	-2.1395607163046	0.00223143152185038	0.0254432278698843
Merged-chr12-111441813-4	chr12	111441697	111441897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009396)	promoter-TSS (NM_009396)	-864.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	7.50816445219241	7.98380762765938	7.31341265024614	6.93988993641648	7.64108125891737	7.54283219880562	7.41683314557858	7.05023860861041	-0.0728268000520223	0.77911055087427	0.913841690258744
Merged-chr5-140138223-3	chr5	140138120	140138320	+	889.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359027, intron 1 of 6)	intron (NM_001359027, intron 1 of 6)	36698.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	4.21670136894716	4.19777252909283	4.21734220468253	4.35847686311878	3.9119718275693	4.14746825449248	4.10693656569393	4.52722590458497	-0.173857744471586	0.679381417093269	0.868415010995453
Merged-chr8-13674887-4	chr8	13674811	13675011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	2676.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	5.59754857021377	5.75493874248212	5.98004537061968	5.90200445334378	5.80124800000134	5.65925954801953	5.84308533405485	5.77565180235957	-0.0802527506173264	0.75331304329667	0.902798885097597
Merged-chr14-55122146-4	chr14	55122043	55122243	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5208.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	4.68271895479849	5.00944555941923	4.64259935100746	4.77867437004339	4.93140251050771	4.49705371637875	4.8468306623636	4.90119176787021	0.0484945390267603	0.888803119039244	0.958331420576655
Merged-chr19-37448438-4	chr19	37448327	37448527	+	894.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13586.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	4.77115068921925	4.65183504241914	4.62374685291103	4.66609114017504	4.35737939497987	4.63169351365969	4.29610877728123	4.86928371733718	-0.276586039251844	0.455652750856633	0.739059957005384
Merged-chr16-28517956-4	chr16	28517883	28518083	+	939.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010199, intron 2 of 5)	intron (NM_010199, intron 2 of 5)	46512.0	NM_001357064	14167.0	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	6.06869122161818	6.03350799149167	6.35761779105793	6.13656525771834	4.82525608169605	4.72738456812743	4.506517094481	5.04565330339149	-2.44479359514807	1.32791426653122e-14	2.02397450915258e-12
Merged-chr19-6306558-8	chr19	6306427	6306627	+	986.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033342)	promoter-TSS (NM_001033342)	70.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	4.33943734486175	4.2876614101214	4.25705365817751	3.49514785267827	4.23853365392031	4.38591700509245	4.19414646173098	3.85624720418469	0.125215686328028	0.798670356152395	0.922179542886722
Merged-chr4-130912382-4	chr4	130912295	130912495	+	901.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010686)	promoter-TSS (NM_010686)	-939.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	4.28146356362019	4.51569562309431	4.23622811604887	4.12458484261815	4.47984289432042	4.5400783322335	4.01857654564211	4.32371134640506	0.163280236937815	0.687582531381767	0.872380452246745
Merged-chr7-19361942-4	chr7	19361850	19362050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001010836, intron 1 of 12)	intron (NM_001010836, intron 1 of 12)	734.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	5.54467122920676	5.72036990232653	5.02721878517197	4.86813143221496	6.02618365497539	5.5211651388628	5.71319512616872	5.40099768027465	0.628296777700315	0.0692935472009302	0.281525824509847
Merged-chr5-122770984-3	chr5	122770891	122771091	+	948.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 1 of 16)	intron (NM_001199676, intron 1 of 16)	8419.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	3.64613370308006	3.80090138089721	3.97169623087032	3.70630969974973	3.59803765763972	3.4648308531267	3.40399935676955	3.59061853982592	-0.831626912123432	0.0905864442548398	0.328704618172112
Merged-chr5-137748720-6	chr5	137748677	137748877	+	872.013916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023910, intron 2 of 4)	intron (NM_023910, intron 2 of 4)	2808.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	3.49707506745083	3.27067415679316	3.49757897038696	3.45473886546806	3.38452610192623	3.5052803749236	3.20305589518547	3.14737089909609	-0.402139357167928	0.450670477720003	0.735419746753298
Merged-chr4-34495486-2	chr4	34495392	34495592	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	ID_B1|SINE|B4	-55123.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	5.98816725752148	6.02798296756229	6.05263160872567	5.78288722385761	5.7845535943393	5.87602452040597	6.32876899514247	5.91823529723185	0.0528051743748403	0.839473485813662	0.938941281871456
Merged-chr10-125325301-4	chr10	125325210	125325410	+	865.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 1 of 5)	ORR1F|LTR|ERVL-MaLR	3653.0	NM_011391	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	4.14498027233703	4.02529541320994	4.44679629742791	4.65338905943466	3.98334987002978	4.16942699813719	4.17499826170645	4.36496232125164	-0.447044784299394	0.302647592311831	0.615138577189143
Merged-chr13-89384848-4	chr13	89384734	89384934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44B|LTR|ERVK	-155802.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	6.55929648078092	6.50556506440268	6.84679566415186	6.31420213543421	8.16221289025104	8.08596246779482	7.9868657536022	7.87603572726985	1.99887368493426	1.31488083255494e-24	7.79932523170236e-22
Merged-chr6-39118228-4	chr6	39118086	39118286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045813)	promoter-TSS (NR_045813)	163.0	NM_172893	243771.0	Mm.268462	NM_172893	ENSMUSG00000038507	Parp12	9930021O16|AA409132|AA536654|ARTD12|PARP-12|Zc3hdc1	poly (ADP-ribose) polymerase family, member 12	protein-coding	6.51618880703189	6.29637586983616	6.4692351089173	6.38890673646634	6.41349930228515	6.24456793187558	6.26141227816757	6.27005637580894	-0.16407132699826	0.451159551894107	0.735800313712694
Merged-chr11-93988689-3	chr11	93988570	93988770	+	743.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7421.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	4.1557170260937	3.90045448550808	3.99098821776095	3.58474020373726	3.65985725952084	3.81340832879892	3.50271868023609	3.7459240108419	-0.67872083704389	0.16717864359632	0.458682830533957
Merged-chr3-121494225-4	chr3	121494126	121494326	+	953.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145394, intron 10 of 14)	intron (NM_145394, intron 10 of 14)	38118.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	4.62087378023752	4.68729898242377	4.66121605454986	4.91171779103351	4.93618743563945	4.48397092637353	4.55992203533638	4.53566741919284	-0.171826582440581	0.638290885811295	0.847107321260459
Merged-chr4-129701674-4	chr4	129701573	129701773	+	981.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4828.0	NM_001356378	230770.0	Mm.257157	NM_199305	ENSMUSG00000053730	Tmem39b	6330509E05Rik|BC037095	transmembrane protein 39b	protein-coding	4.83118356403508	4.94463886621097	4.46181873875126	4.81053149943812	5.37479868699203	5.35736092644929	5.27464391339986	5.5273150509347	1.14122971917651	0.000298866507352044	0.00505537526777831
Merged-chr2-130906473-4	chr2	130906364	130906564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009730)	promoter-TSS (NM_009730)	-31.0	NM_009730	11990.0	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	7.20313544581591	7.23798330478217	7.13599295708847	7.33999264496539	7.35492584284622	7.13764811666136	7.24342963372684	7.1073901271503	-0.024403809607463	0.894767086228567	0.96069135232764
Merged-chr4-34551362-7	chr4	34551272	34551472	+	952.0979609999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007589, intron 1 of 4)	intron (NM_001007589, intron 1 of 4)	757.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	4.15180646089116	3.80601908262624	4.55083160033266	4.32596043000585	4.2644708784125	4.01703633709573	4.08724547831406	4.24018154927097	-0.192581734869974	0.661141320982758	0.859233242450522
Merged-chr16-36633265-4	chr16	36633170	36633370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	32807.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	5.47348003497396	5.82401511381192	5.28832112359076	5.22204377113419	5.85358387718975	5.88405757949302	5.55675020652779	5.44141787802329	0.399107747790625	0.185334304045442	0.483227538833749
Merged-chr5-137817657-4	chr5	137817550	137817750	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360023, intron 13 of 16)	intron (NM_001360023, intron 13 of 16)	18628.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	4.91061836271002	5.10587369178928	4.83802720567094	4.71833021849607	4.91760449136062	4.97468973151266	4.95669669754264	5.01074663584046	0.145437261587448	0.652094354396774	0.854371197592505
Merged-chr8-84872200-4	chr8	84872163	84872363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168244)	promoter-TSS (NM_001168244)	5.0	NM_001168244	71846.0	Mm.229128	NM_027954	ENSMUSG00000003824	Syce2	1700013H19Rik|AA407907|Cesc1	synaptonemal complex central element protein 2	protein-coding	6.02431751754268	5.57403835146312	5.77847404543731	5.43023229144394	6.01520339944821	6.0027209838326	5.67294462637126	6.27774179237175	0.493959906160834	0.0810698435184879	0.308895155066777
Merged-chr8-56370816-3	chr8	56370712	56370912	+	884.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76260.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	3.35484352657535	3.44133947839329	3.52644885319716	3.98170841958982	3.07566310422607	3.27095577612795	3.66130516600787	3.524452150549	-0.696745338385283	0.234331918850538	0.54419885879573
Merged-chr10-77531119-4	chr10	77531021	77531221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	773.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	6.0283381670527	6.09197718430173	6.12720152218693	5.93885276591779	5.49605713511427	5.93413637664401	5.41823313768114	5.82732172263879	-0.594373198399876	0.0247600455082723	0.147505463611761
Merged-chr11-54113057-4	chr11	54112957	54113157	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136076, intron 5 of 15)	intron (NM_001136076, intron 5 of 15)	12133.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	5.46439331358525	5.89866729774099	5.62487067822073	6.00561170710687	5.1333511797567	5.21365776000845	5.38032982447805	5.14170039089892	-0.988578238303943	0.000817440369571005	0.011440147083306
Merged-chr9-36768248-1	chr9	36768148	36768348	+	825.0	f0_c57.idr	promoter-TSS (NM_008408)	promoter-TSS (NM_008408)	-670.0	NM_008408	16430.0	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	4.06352197404202	4.14684010038685	4.27884777054178	4.0965187291115	4.35501081875537	5.1852684062505	4.6772225561743	4.98506344968122	1.52573719782711	0.000166638921220263	0.00312218788458465
Merged-chr8-105758666-4	chr8	105758567	105758767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027469)	promoter-TSS (NM_027469)	-60.0	NM_027469	70575.0	Mm.40954	NM_027469	ENSMUSG00000013150	Gfod2	5730466C23Rik	glucose-fructose oxidoreductase domain containing 2	protein-coding	6.09976584664248	6.1880302686897	5.85621083424733	6.14055013018648	5.95386031398301	6.12643133184978	5.98657965365102	5.99120106402211	-0.114254481475368	0.630575586712881	0.842918789187128
Merged-chr6-120077183-3	chr6	120077088	120077288	+	941.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-16192.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	3.95447175011146	3.74759017550509	3.46022170170772	3.86530907604429	3.43022398576238	3.51296262229403	3.44792089325082	3.5737756892707	-0.915436835492815	0.0676015809407268	0.277529872521628
Merged-chr6-148914078-4	chr6	148913947	148914147	+	986.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17810.0	NM_181541	232560.0	Mm.150568	NM_181541	ENSMUSG00000030309	Caprin2	C1qdc1|Eeg1|rng140	caprin family member 2	protein-coding	5.24423009652679	4.94428806310941	5.18215720816328	5.72562356461982	4.71565587427237	4.66352714025949	5.6949026419938	5.4133916209175	-0.214350993669824	0.599672893656674	0.826554809116562
Merged-chr1-87042232-3	chr1	87042093	87042293	+	723.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172157, intron 15 of 21)	intron (NM_001172157, intron 15 of 21)	47735.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	3.12085632680754	2.96351324614947	3.28324674494777	2.98735320483686	3.18537511278905	2.90067223773572	3.26950875663223	2.99869779148788	0.0497714401687345	0.932553883796829	0.975705970730615
Merged-chr15-81466220-4	chr15	81466126	81466326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019712)	promoter-TSS (NM_019712)	-90.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	7.94148435330034	8.16858034703495	7.78706737529871	7.3301288659584	8.08588311303118	8.18822396903878	7.95901175285457	7.71697523942044	0.212727447779303	0.339930418308812	0.648997231458602
Merged-chr16-18680251-3	chr16	18680146	18680346	+	871.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5A|LINE|L1	-50308.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	4.37939636633419	4.78637441096574	3.79523458386406	4.65882062874383	3.65067220782139	3.57395688988315	3.89644697457781	4.29628371191794	-1.47204628154884	0.00580210202870299	0.0530083198948851
Merged-chr10-80510500-4	chr10	80510378	80510578	+	973.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139226, intron 1 of 1)	intron (NM_139226, intron 1 of 1)	15572.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	4.36051112196013	4.57026647692503	4.66847106217577	4.8719771464704	4.80075969211737	4.84078238087842	4.64675371338522	4.74117060669886	0.229998069990278	0.5220352474619	0.781811708447454
Merged-chr7-19303947-4	chr7	19303830	19304030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008036, exon 4 of 4)	3' UTR (NM_008036, exon 4 of 4)	6115.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	6.2307714903544	6.92916076839996	6.10799913037845	5.63071337498558	6.51329320643573	6.80793739083198	6.31199319809627	5.8131612731217	0.14681470655967	0.671779694834508	0.864905117611895
Merged-chr16-38679065-4	chr16	38678973	38679173	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	RCHARR1|DNA|hAT-Charlie	33962.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	4.54830383820639	5.22358949007939	4.31726394801091	4.27058070835523	4.73550862945682	4.98848872477399	4.79312895112818	4.09619723471623	0.0842917615581435	0.855321773926937	0.945605960367573
Merged-chr15-58260779-3	chr15	58260688	58260888	+	944.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45896.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	4.79101723914051	4.41801417445885	4.33039625995	4.52224243179676	4.61861700361229	4.31029580628825	4.31156393829229	4.45962499401623	-0.191795716770744	0.615886038791271	0.83467255086626
Merged-chr16-33400385-4	chr16	33400276	33400476	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358569)	promoter-TSS (NM_001358569)	-69.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	4.95063220711591	4.96225520414529	5.01878831728273	5.12912729070911	4.93888237203149	4.77398560254186	4.82046953431457	4.9131144708083	-0.314543133867035	0.32109452192702	0.632824656919975
Merged-chr11-120349040-4	chr11	120348940	120349140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313923)	promoter-TSS (NM_001313923)	362.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	5.11813728148329	5.17216770643903	5.25029258687504	5.16949126112745	5.70330485023861	5.56994029554701	4.87032977511904	5.33685568714368	0.431344368324875	0.181664004442393	0.478311096108792
Merged-chr10-96374384-4	chr10	96374285	96374485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	148178.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	6.60279105307875	6.52848468092046	6.86419579762826	6.85931946731707	6.26390229375936	6.09293606992087	6.52382750447428	6.05591826040565	-0.701343116392682	0.00275707477486134	0.0298927380654769
Merged-chr1-127836811-4	chr1	127836699	127836899	+	971.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011737, intron 2 of 9)	MLT1A0|LTR|ERVL-MaLR	3491.0	NM_011737	22625.0	Mm.246566	NM_011737	ENSMUSG00000051590	Map3k19	Ysk4	mitogen-activated protein kinase kinase kinase 19	protein-coding	4.60504183521515	4.54849307189609	4.75752371974669	4.8635822970534	4.7103180539756	4.30852581664808	4.66196019749023	4.7181377610893	-0.200793193926287	0.579123958698162	0.815233759185512
Merged-chr19-23135612-4	chr19	23135514	23135714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5612.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	6.53556875016136	6.70621037748431	6.70697284741329	6.23455189681101	6.54120168412455	6.8386612648761	6.82196579363768	6.4813550511921	0.188325325785227	0.420084474561274	0.713072018633276
Merged-chr11-30900533-3	chr11	30900432	30900632	+	887.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	15174.0	NM_175490	237716.0	Mm.338361	NM_175490	ENSMUSG00000043999	Gpr75	-	G protein-coupled receptor 75	protein-coding	3.88748240805323	3.98291341050125	4.29679365700614	3.3861373134062	4.47771172312143	4.07555055223965	5.08371913991534	4.33717103012428	1.51171150603444	0.00256985070977712	0.0283172393487442
Merged-chr17-74395553-4	chr17	74395437	74395637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144798)	promoter-TSS (NM_144798)	-71.0	NM_001252478	210148.0	Mm.243943	NM_144798	ENSMUSG00000024069	Slc30a6	9530029F08Rik|ZnT6	solute carrier family 30 (zinc transporter), member 6	protein-coding	8.33328321549146	8.04532112640172	7.78246260519448	8.11241573342048	8.03806173025497	7.95200489736359	7.98561118306406	7.84778410383637	-0.160240905708318	0.370069749995874	0.674242166386213
Merged-chr2-18047496-3	chr2	18047379	18047579	+	858.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028317, exon 1 of 1)	exon (NM_028317, exon 1 of 1)	970.0	NM_028317	72668.0	Mm.102183	NM_028317	ENSMUSG00000054074	Skida1	2810030E01Rik|5730507N06Rik|BB088113|DLN-1	SKI/DACH domain containing 1	protein-coding	3.27590850244658	3.26174066548005	3.33262482787298	3.43690396870942	3.17656056684961	3.20021109036267	3.26424656926537	3.38464495216864	-0.292217226728484	0.582706847404128	0.81675575383755
Merged-chr3-9897218-4	chr3	9897111	9897311	+	891.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-63532.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.42537026466452	4.38343837649467	4.42606301360802	4.46029750128705	4.30309694703903	4.32456811607002	4.44666988170317	4.50394180288907	-0.077591413899184	0.832792167102239	0.936110317928245
Merged-chr15-50997280-4	chr15	50997179	50997379	+	618.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107238.0	NM_032000	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	3.13517107112439	3.27634646524866	3.20516775236078	3.53564539999989	3.20986192887702	3.78159677488125	3.78019004829371	3.70645011263868	1.06880522073883	0.0629235091155762	0.265963922525986
Merged-chr6-37615274-4	chr6	37615195	37615395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85122.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	5.91179583080582	5.37438040143675	5.84337545930826	6.32362900257951	5.74411369969973	5.69973890638826	6.10745120412314	6.09643425158814	-0.00153597087826532	0.996039621316119	0.998543856884531
Merged-chr8-126517357-4	chr8	126517261	126517461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42296.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	7.83182242273896	7.89837015941041	7.78666299359812	7.94599638328696	7.89540914774276	8.03319158451473	8.12040654677902	7.64837952365836	0.0828321868032541	0.63810219831879	0.847040716325261
Merged-chr4-117288141-4	chr4	117288054	117288254	+	807.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310730, intron 2 of 10)	MIRb|SINE|MIR	1301.0	NM_001310730	66743.0	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	4.26140847132154	4.0478398856228	4.06841852189511	4.33038693594025	4.36332759964027	4.43383136304061	4.2869649590862	4.46611191653244	0.464332582044164	0.23489507424278	0.544754218999311
Merged-chr13-41918582-2	chr13	41918482	41918682	+	720.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52667.0	NR_033545	100038577.0	Mm.387093	NR_033545	ENSMUSG00000113856	Gm10790	-	predicted gene 10790	ncRNA	3.669953564049	4.44169205355576	3.55888568360956	3.06031956986314	3.53645646468055	3.89827832256807	3.36003960963913	3.30240865313328	-0.721180772209207	0.257751809224573	0.569608784519116
Merged-chr12-37255621-4	chr12	37255528	37255728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178767, intron 3 of 12)	intron (NM_178767, intron 3 of 12)	13989.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	5.39555826904811	4.98456233095074	5.31244496126878	5.29281023587706	5.02723437277359	5.12335496936688	5.36937737735251	5.2187692240347	-0.128251392272318	0.673865882871404	0.86588980172769
Merged-chr12-72336225-4	chr12	72336124	72336324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	72830.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	5.46140190844933	5.50920130895503	5.72941372000541	5.94344210372417	6.30899122517325	6.27444817700185	6.25300039339362	6.39625609327656	0.95197141241719	0.00024303135111552	0.00426602430112247
Merged-chr12-102695543-4	chr12	102695391	102695591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	9378.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	5.11054641168537	4.75612782279028	5.07901201387072	5.34126601492811	4.9401617659019	5.18531135954158	4.95267118010396	5.0755493839148	-0.129285884558971	0.694883997780724	0.876178421605182
Merged-chr1-180811250-4	chr1	180811132	180811332	+	911.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008210, intron 2 of 3)	intron (NM_008210, intron 2 of 3)	2373.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	4.31932414883615	4.52152742213723	3.95379450968406	3.05095155028385	4.30726462699928	4.3248747470682	4.08456705144648	3.65879762218758	0.0251776550059732	0.976410940120348	0.991537706656775
Merged-chr16-91685729-4	chr16	91685618	91685818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021720, intron 3 of 9)	intron (NM_021720, intron 3 of 9)	3010.0	NM_021720	60364.0	Mm.328698	NM_021720	ENSMUSG00000022960	Donson	1110025J21Rik|AI845729|ORF60	downstream neighbor of SON	protein-coding	7.82009648603609	7.81378416847342	7.47980042305899	7.43519725810871	7.52161021943098	7.80163674961809	7.6288689705006	7.30022614133853	-0.0935694679211483	0.640464924983416	0.848189720270798
Merged-chr13-36534342-4	chr13	36534254	36534454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 5 of 5)	intron (NM_001039189, intron 5 of 5)	200123.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	7.60628011280301	7.9043550054267	7.67785431320594	7.83281797590883	7.85724993020001	8.13032705117583	7.96822416916083	7.84025298592871	0.238814050071205	0.168343583034578	0.460406051518413
Merged-chr2-34785955-2	chr2	34785855	34786055	+	742.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 4 of 7)	(CACAG)n|Simple_repeat|Simple_repeat	13865.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	3.52318095276799	4.01655038550876	3.29481614313219	3.06625591585045	3.40541912435439	3.472734280647	3.01111913321626	3.41231171322706	-0.634890478805475	0.308831611076544	0.621180209246561
Merged-chr6-22325834-4	chr6	22325707	22325907	+	844.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138587, intron 5 of 9)	intron (NM_138587, intron 5 of 9)	30274.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	4.0290400170212	4.31809502474947	4.12589873921891	4.24303198655198	4.08174073447382	4.04699892442069	4.39253654423902	3.86990744328389	-0.198369798721413	0.639460373980627	0.847607151813091
Merged-chr11-61931202-2	chr11	61931102	61931302	+	944.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019921)	promoter-TSS (NM_019921)	-945.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	3.06514500064718	3.16119344392161	2.86953530645379	2.90533364222853	2.96678262578678	3.23639379337984	3.11359882891685	3.4291506604932	0.776213340627442	0.18559655930234	0.483549688674278
Merged-chr15-81810975-4	chr15	81810888	81811088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017376)	promoter-TSS (NM_017376)	-426.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	7.69073254524801	7.78798716958137	7.69202954003945	7.45152083545735	7.96252408835626	8.04045045257854	7.80316944321766	7.74378425454949	0.31438018396799	0.0768232190824698	0.299578146664719
Merged-chr2-78869799-3	chr2	78869691	78869891	+	973.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151458, exon 1 of 7)	non-coding (NR_151458, exon 1 of 7)	113.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	3.7897286584925	4.08210344328951	4.14147640385349	3.84473164833812	3.9369362030516	4.31084010265353	3.88473469620366	4.18197067342876	0.314424716947868	0.472493793015726	0.750655344998429
Merged-chr2-12033935-4	chr2	12033762	12033962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	256109.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	5.11473411631349	5.59387109006367	5.87219418120189	5.58972905926525	5.70052245854731	5.68301555821246	5.36301892349154	5.71109684603893	0.0894649550951006	0.762828378614631	0.907011913026374
Merged-chr16-43253248-2	chr16	43253148	43253348	+	737.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 1 of 6)	intron (NM_181058, intron 1 of 6)	5964.0	NM_019778	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	3.1549178918952	3.50154895750675	3.34352562040251	3.14954067566174	3.45013219640473	3.67612693599134	3.44152214756305	3.34177110628008	0.665140006061665	0.206065390514279	0.50996204823781
Merged-chr1-33912756-4	chr1	33912654	33912854	+	971.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 2 of 102)	intron (NM_001276764, intron 2 of 102)	4529.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	4.92649639916829	4.95313435643203	4.89017416600662	5.09062417647828	5.15224086751886	5.33177927461011	5.04121479889747	4.84876095501459	0.243963484667945	0.442821687038648	0.72958107334361
Merged-chr6-142831505-3	chr6	142831415	142831615	+	819.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045707, intron 6 of 6)	intron (NR_045707, intron 6 of 6)	17284.0	NR_045707	665037.0	Mm.401493	NR_045707	ENSMUSG00000072683	Gm7457	EG665037	predicted gene 7457	ncRNA	3.40145483942042	3.22820942502128	3.55202707490213	3.32720347275471	3.25378068155178	3.28055149630875	3.27874665183797	3.1681397794495	-0.482194223706319	0.366429939914175	0.670870844517492
Merged-chr12-100839433-4	chr12	100839325	100839525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145448, intron 4 of 12)	intron (NM_145448, intron 4 of 12)	60099.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	6.42958727192296	6.25893186941568	6.57066684272366	6.63598795040327	7.20924024122105	6.85831948370901	7.06676506801685	6.69186988625483	0.694854034268157	0.00208257903612541	0.0241151607633594
Merged-chr7-27160034-4	chr7	27159916	27160116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357767, intron 2 of 4)	intron (NM_001357767, intron 2 of 4)	5712.0	NM_001357767	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	6.02454747237438	6.29100406715435	6.10930964999944	6.28499044270289	6.1449112772704	5.67944486237798	6.28186438621279	5.70373657161017	-0.310581935629779	0.241401364606125	0.551983929175346
Merged-chr13-56704171-3	chr13	56704084	56704284	+	806.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164042, intron 1 of 6)	intron (NM_001164042, intron 1 of 6)	516.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	3.14814308704311	2.87204503600249	2.81336725324107	2.86227113826616	3.4719681975373	3.26155672979945	3.35142493002292	3.20478135069045	1.60471172741444	0.00496541946945634	0.0473074009391558
Merged-chr7-4653990-4	chr7	4653881	4654081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172894, intron 1 of 23)	intron (NM_172894, intron 1 of 23)	4969.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	6.74643234465791	6.96877188168761	6.81636613593991	6.84626658076098	6.50648109076705	6.29969649701086	6.37620828133258	6.60875647266677	-0.563545211734344	0.00683899370477642	0.0598687409804798
Merged-chr1-74077546-3	chr1	74077456	74077656	+	729.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289895, intron 2 of 32)	intron (NM_001289895, intron 2 of 32)	46891.0	NM_027884	21961.0	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	3.29331837543729	3.66870705165751	3.35811077899784	3.64176164538982	3.88028304883296	3.53353245293848	3.46548366965835	3.68758744690527	0.464841715999946	0.3714138414924	0.675446164536008
Merged-chr4-149836187-4	chr4	149836100	149836300	+	923.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-61933.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	3.81118370583138	3.67006987212457	3.70137360661113	3.85941628418281	4.24628908233786	3.82068611694172	4.23375465904226	3.75564610071866	0.753874175277588	0.10143848060063	0.349490825767668
Merged-chr11-78916597-4	chr11	78916487	78916687	+	906.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4200.0	NM_010927	18126.0	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	4.55766374641852	4.71677130572914	4.35222822535018	4.53358166207269	4.40248540528745	4.33735949099505	4.192921356124	4.34954399049641	-0.516389961567975	0.170727955475809	0.46393239454885
Merged-chr3-151294180-3	chr3	151294077	151294277	+	830.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143705.0	NM_133222	170757.0	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	3.7240901542574	3.48760933291684	3.81584780160667	3.7087746327214	3.3453767272201	3.51844025809667	3.55970379592355	3.20680725097965	-0.923106353356012	0.0739704425657661	0.293045145621899
Merged-chr2-160208477-4	chr2	160208383	160208583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119011.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	5.80532234687962	5.36397336826859	5.98427955392379	5.81454790641505	5.65016578927414	6.05064536723417	5.45429288692312	6.24069972878764	0.195449745427441	0.523821475988845	0.782647016014066
Merged-chr10-95533087-4	chr10	95532974	95533174	+	681.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	RLTR17|LTR|ERVK	17912.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	3.61914411037216	3.98952917475231	4.01659789864273	3.51541695894747	3.61462534176192	3.85088345338577	3.81700116426181	3.72876611412144	-0.126208206410597	0.795158783272651	0.920768225652583
Merged-chr2-181187239-4	chr2	181187129	181187329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356427)	promoter-TSS (NM_001356427)	-18.0	NM_025598	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	7.89057318634121	8.08442183009091	8.15656779499419	8.10641216219282	8.27423510132965	8.24548233814417	8.35097600315248	8.06249387887744	0.221110201692983	0.173194439253275	0.467192442930568
Merged-chr1-85935719-2	chr1	85935619	85935819	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	7236.0	NR_037692	71141.0	Mm.314965	NR_037692	ENSMUSG00000026224	4933407L21Rik	-	RIKEN cDNA 4933407L21 gene	ncRNA	2.97832135228158	3.24383031623675	3.16550803409573	3.03119585292139	3.16824025174073	3.15312506171342	3.26329307867146	3.16385803430359	0.321678068524342	0.559291716761379	0.803686863717007
Merged-chr7-104218844-4	chr7	104218719	104218919	+	690.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013616)	promoter-TSS (NM_001013616)	24.0	NM_001013616	94088.0	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	3.64204098181285	3.51391032560947	3.69977523189618	3.67678691937217	3.90653405085229	4.33112728373367	4.02386844662003	3.64057619313529	1.02043703705321	0.0310734746808721	0.171322568457696
Merged-chr10-4414578-2	chr10	4414443	4414643	+	846.333374	f0_c57.idr|f1_c57bl6.idr	non-coding (NR_002891, exon 6 of 12)	non-coding (NR_002891, exon 6 of 12)	14623.0	NR_002891	433224.0	Mm.153111	NR_002891	ENSMUSG00000112693	Gm5512	EG433224	required for meiotic nuclear division 1 pseudogene	pseudo	2.82310306357102	2.61447782015623	2.89120217694058	2.62440500457222	3.22991167543342	3.24658952755125	3.06357019413651	3.13049211463268	1.92826865664587	0.00140387583609838	0.0177066960492316
Merged-chr1-64925892-4	chr1	64925811	64926011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	intron (NM_001039493, intron 2 of 7)	30913.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	7.94690996232454	8.05653666198601	7.85569328987652	8.13411132276057	7.76914800442869	7.54243374721712	7.64404767307812	7.70981201064297	-0.437317947475486	0.00982064552114134	0.0778626532404443
Merged-chr6-116003692-4	chr6	116003589	116003789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8684.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	6.47081167240412	6.40910891105086	6.33159761255034	6.47981841205505	6.48361077569824	6.45100560508397	6.29932161741286	6.38150964533629	-0.0292830820378562	0.890408214078485	0.958997364311038
Merged-chr17-5797543-4	chr17	5797438	5797638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1119.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	5.33701203724732	5.11962007347107	5.07559990861295	5.76940865413992	5.5202341823576	5.102285472323	5.12138230061549	5.60010300098423	-0.0290793645497748	0.932353876078012	0.97563407274323
Merged-chr6-82652978-4	chr6	82652879	82653079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025882)	promoter-TSS (NM_025882)	-114.0	NM_025882	66979.0	Mm.195753	NM_025882	ENSMUSG00000030042	Pole4	2400007P05Rik|5830430F06Rik	polymerase (DNA-directed), epsilon 4 (p12 subunit)	protein-coding	7.97265361540009	8.20183521578161	7.64528168793134	7.94856674268792	7.99442782520076	8.0134677068524	8.22803245153173	7.76754606834441	0.0667162254335479	0.727447779687557	0.891505430861744
Merged-chr2-158624894-4	chr2	158624793	158624993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175419)	promoter-TSS (NM_175419)	-20.0	NM_175419	109275.0	Mm.27747	NM_175419	ENSMUSG00000037761	Actr5	AA545173|B430109J19Rik	ARP5 actin-related protein 5	protein-coding	6.83292162676264	6.82027793140029	6.1521944725838	6.83366578772606	6.60917294507575	6.70749024940994	7.12850632672134	6.88214384692471	0.205978265162924	0.407180673201196	0.703566372233527
Merged-chr3-31270113-3	chr3	31269996	31270196	+	736.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172861, intron 1 of 7)	L2|LINE|L2	40223.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	3.50172638065596	3.7132872339512	3.70599053238421	3.63791150792708	3.29668209106534	3.43805086348125	3.43296225159064	3.44395313411494	-0.827205288327824	0.0986903706911732	0.344347151736618
Merged-chr18-82876403-4	chr18	82876288	82876488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20491.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	6.79834373438121	6.89769529338953	6.16932370906463	5.94425222754758	6.70537985833118	6.79317889289848	6.33522954950305	6.09879429338594	0.00816205937301848	0.978766239772608	0.992516114931184
Merged-chr4-86823366-3	chr4	86823269	86823469	+	697.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_184088, intron 21 of 31)	B3|SINE|B2	33998.0	NM_009096	20104.0	Mm.379007	NM_009096	ENSMUSG00000028495	Rps6	S6R	ribosomal protein S6	protein-coding	3.34902799810105	3.65789594565495	3.15308827833646	3.483553120608	3.93880504048536	3.69304048673391	3.45542074722511	3.67628396161052	0.906468120996607	0.0900991436867754	0.327769066820483
Merged-chr5-33039607-4	chr5	33039497	33039697	+	869.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20781.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	4.28848671795245	4.23912637085241	3.75634759066757	3.8590388287859	4.29377535888203	3.99272260154368	3.95973459867036	4.07129499770221	0.117572812043749	0.793200791745658	0.91989642620941
Merged-chr13-92668761-4	chr13	92668654	92668854	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172588, intron 2 of 11)	MLT1A1|LTR|ERVL-MaLR	57616.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	4.74175155343317	4.64395825131262	4.48589702601967	4.66358219277021	4.3638681013389	3.93324063266706	4.24623024157524	4.44173024388019	-0.863076959196014	0.0282219470506188	0.160884988716642
Merged-chr1-33904363-4	chr1	33904263	33904463	+	827.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	B4|SINE|B4	3258.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	3.82235356945686	3.58278481217584	3.72086031262979	3.54045496150086	3.873395424823	3.78524410414326	3.70586408598667	4.00271839852748	0.559615411275995	0.220936090059909	0.52902341133927
Merged-chr10-82860760-4	chr10	82860632	82860832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042513, intron 2 of 14)	intron (NM_001042513, intron 2 of 14)	391.0	NM_001042514	50493.0	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	8.08905399326085	8.56414182277457	8.60462957108892	8.33633819469212	8.48741232963386	8.58360162031443	8.67633061218614	8.3075914019779	0.134270013401235	0.457743622647356	0.740780149521773
Merged-chr6-26304411-4	chr6	26304309	26304509	+	985.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	372983.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	5.08906701219911	5.15971335155501	5.83924160214695	5.72780718326066	5.25068980195326	5.03452243452009	5.2344313569445	5.56667665489711	-0.386301881414678	0.254955336679402	0.56647102976349
Merged-chr11-110987274-4	chr11	110987178	110987378	+	716.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252207, intron 2 of 2)	intron (NM_001252207, intron 2 of 2)	-10209.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	4.67147462283322	4.36518201893047	4.35618343629089	4.76955992227818	4.50792561563176	4.52965186748375	4.24501685993428	4.05288946283021	-0.484692576188873	0.230658767040462	0.540191550156043
Merged-chr13-102860903-1	chr13	102860803	102861003	+	802.0	f0_balb.idr	intron (NM_175171, intron 4 of 28)	L2a|LINE|L2	100648.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	3.49000369991666	3.21294118099334	3.73105343903368	3.58524671183438	3.50941538550646	3.23625298741922	3.24795775319161	3.43446617425259	-0.514360363988658	0.343655233170088	0.652276895064496
Merged-chr4-32570786-4	chr4	32570671	32570871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_026843, intron 1 of 4)	intron (NR_026843, intron 1 of 4)	891.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	6.22762774266439	6.28556184425464	6.00426037912393	6.094790606536	6.19120231046915	6.15805861129601	6.17811985382863	5.85856368572086	-0.0735783252079156	0.756738784817971	0.904454947855029
Merged-chr10-57755409-3	chr10	57755305	57755505	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29518.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	3.48933970661483	3.10621596139036	3.20459830626605	3.71884258365718	3.11521648580439	3.37952601164711	3.47524009545208	3.3813255652175	-0.255149455175522	0.659750054083346	0.858507296153538
Merged-chr10-77551131-4	chr10	77551025	77551225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 8 of 15)	intron (NM_008404, intron 8 of 15)	20777.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	8.30464736326681	8.58573303651178	8.57131304982205	8.46556624640092	8.00737690959083	8.13160794656705	8.30542726842644	8.18981770008825	-0.415899812869193	0.0104131216720445	0.0813160271524358
Merged-chr3-133075798-4	chr3	133075695	133075895	+	904.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356309, intron 3 of 11)	B4A|SINE|B4	16030.0	NM_026231	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	4.51851217163895	4.3218309216373	4.36172124323352	4.62701262866099	4.31184800430386	3.84750558088877	4.16403461589149	4.2722820425656	-0.730822742810313	0.0762844093479347	0.298263009064823
Merged-chr6-122596756-4	chr6	122596687	122596887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134391, intron 2 of 7)	intron (NM_001134391, intron 2 of 7)	5657.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	6.27483821617238	6.45075954186454	5.97771121500978	5.8104717670538	6.4665597972887	6.59479501538259	6.73669263806055	6.15216412663337	0.542175452565085	0.0403977856329486	0.203097469454445
Merged-chr11-95042307-4	chr11	95042202	95042402	+	983.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133667)	promoter-TSS (NM_133667)	-931.0	NM_133667	18604.0	Mm.29768	NM_133667	ENSMUSG00000038967	Pdk2	-	pyruvate dehydrogenase kinase, isoenzyme 2	protein-coding	5.5524508763139	5.22430360392235	4.96255687260949	4.86797082019996	4.75449131584276	4.98867393794883	4.662029773877	5.2179160794954	-0.484000136747961	0.180129706950844	0.476476660442342
Merged-chr11-115173676-4	chr11	115173604	115173804	+	838.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	10363.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	4.48520475158155	4.74951700010318	4.10066924193268	3.43382677246022	4.19759290309031	4.12416586878073	4.13110654697768	4.19410281064873	-0.303725111301516	0.559631277033584	0.803980525375318
Merged-chr6-51533611-4	chr6	51533528	51533728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361581, intron 1 of 6)	intron (NM_001361581, intron 1 of 6)	9368.0	NM_001361580	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	6.36833070956708	6.63414124035488	6.25905505249568	6.32876391095864	6.34462010991369	6.62950988217953	5.90169907530211	6.04616089053179	-0.215215779095503	0.404021705430518	0.701206012163242
Merged-chr1-40224973-4	chr1	40224890	40225090	+	936.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008362)	promoter-TSS (NM_008362)	-90.0	NM_008362	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	4.85282909191898	5.23338836487458	5.24289581762617	5.46151649145427	4.68283078884089	4.64260845339456	4.71257924308407	4.85040500680538	-1.0115730340303	0.002881164247965	0.0309963640159417
Merged-chr17-35047278-4	chr17	35047185	35047385	+	953.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146215)	promoter-TSS (NM_001146215)	-540.0	NM_001146215	17687.0	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	4.56004723785358	4.44853583166305	4.47309762531911	4.74956420442407	4.98393786510564	4.50740266615802	4.96685457442993	5.01715363978745	0.658178273267918	0.0683095019223705	0.279130249199254
Merged-chr15-103311364-2	chr15	103311266	103311466	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030720)	promoter-TSS (NM_030720)	-928.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	3.40789539386293	3.32353429465807	3.09430731758401	2.63902133642965	3.34753733262624	3.40989501918019	3.33740399360328	3.94634705213528	1.32935411481963	0.0386134033920994	0.197234548980713
Merged-chr7-127921724-4	chr7	127921613	127921813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360699, intron 5 of 10)	intron (NM_001360699, intron 5 of 10)	8400.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	5.19953292687091	5.46436776235632	5.23188085665815	5.13882239858803	5.13605800270709	5.30983034980226	5.23656999392586	5.164622600565	-0.0913793013643796	0.75691280631909	0.904554066545557
Merged-chr11-61174584-4	chr11	61174453	61174653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004143, intron 1 of 12)	CpG	506.0	NM_001004143	216825.0	Mm.30602	NM_001004143	ENSMUSG00000042506	Usp22	AI427806	ubiquitin specific peptidase 22	protein-coding	5.19386642432113	5.0390293142029	4.96130791205781	4.83377011413096	5.1229566733819	5.17227293523515	5.22804709937368	5.22122109692663	0.355200941278387	0.243888658213871	0.554947209992653
Merged-chr3-22034751-4	chr3	22034657	22034857	+	802.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41895.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.35914738464078	4.05535403230541	4.0231834695865	4.16267870858406	4.43366138373315	4.53138595368947	4.70119951154044	4.12605066542278	0.73481539885807	0.0676415248150455	0.277613797774902
Merged-chr5-121833879-7	chr5	121833921	121834121	+	961.292542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306127, intron 1 of 8)	intron (NM_001306127, intron 1 of 8)	2083.0	NM_001306126	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	4.34013817433222	4.86996855414252	4.74916904865389	4.51460544044267	4.57705989007082	4.42080876285707	4.36876280414341	4.71059850391734	-0.224973044083416	0.551106832464865	0.798827703906175
Merged-chr3-89103191-4	chr3	89103085	89103285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1218.0	NM_001253751	110196.0	Mm.39472	NM_134469	ENSMUSG00000059743	Fdps	6030492I17Rik|AI256750|Fdpsl1|mKIAA1293	farnesyl diphosphate synthetase	protein-coding	5.55742683785815	5.46787530787978	5.28343454618095	5.78829123318778	5.74259493659918	5.7604279637687	5.55749141055332	5.89005968719018	0.308465564186125	0.272322639635737	0.583792222589289
Merged-chr13-100849294-4	chr13	100849225	100849425	+	901.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-15898.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	4.552452843669	5.26645845948017	4.41871751176576	3.98307937043006	4.87393202853143	4.64411665469804	4.9278571731854	4.36799480857547	0.162028326043133	0.72687700598954	0.891273682846738
Merged-chr1-128549699-4	chr1	128549626	128549826	+	851.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	42573.0	NM_009911	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	3.91523739979494	3.94379336126748	4.42901834110602	4.03305025051099	4.02625671932951	4.09031318319324	4.00000773563256	3.91357191103483	-0.218691784595337	0.614411333790652	0.833854831122559
Merged-chr19-12462797-8	chr19	12462722	12462922	+	987.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010821, exon 2 of 2)	exon (NM_010821, exon 2 of 2)	2043.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	4.26941675935439	4.66683927481541	4.45563355175966	4.50084321484411	4.51774993422909	4.49552064884596	4.51842351855985	4.82436923513998	0.241978339530598	0.510583438263008	0.774867939359323
Merged-chr7-118796952-4	chr7	118796858	118797058	+	946.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 18 of 30)	intron (NM_027815, intron 18 of 30)	56687.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	5.29458195588348	5.57955770150929	5.26541158455114	5.55505785871686	4.84691796567528	4.9312000651811	5.35462095815165	5.09984757859657	-0.693082872792154	0.0272057140660951	0.157092197737534
Merged-chr6-54736288-4	chr6	54736178	54736378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Zaphod|DNA|hAT-Tip100	54654.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	6.28174787786282	6.51709283771167	6.53556703995056	6.85268530523904	6.53300232900808	6.53742461021349	6.59623384188057	6.57900406621377	-0.0329904488331828	0.884952438799098	0.95681542146463
Merged-chr6-122845088-4	chr6	122844992	122845192	+	869.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021899, exon 11 of 11)	3' UTR (NM_021899, exon 11 of 11)	11065.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	4.50028601261467	4.44204926473489	4.8470205580973	4.61073977713406	3.80184329048521	4.26303929556573	4.16905177020646	4.53722378372725	-0.944506318097835	0.0264280462090621	0.154177682248572
Merged-chr1-171840615-4	chr1	171840516	171840716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001252472, exon 2 of 3)	5' UTR (NM_001252472, exon 2 of 3)	919.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	5.82968766493855	5.41603110458835	5.89900339845572	5.4716917824577	6.04286783018411	5.95817159956353	5.91211829818789	5.84971607498047	0.479108570095387	0.0716897414383755	0.287611549196378
Merged-chr2-145998238-3	chr2	145998125	145998325	+	938.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63441.0	NM_175280	78774.0	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding	3.74952570388441	3.8362430352979	3.75002634722877	4.10543313916777	3.8230705898536	3.75324028249338	3.98005303830175	3.99515983223251	0.0114479073680581	0.980027473030762	0.992772119265666
Merged-chr7-72303710-1	chr7	72303610	72303810	+	656.5	f0_balb.idr	intron (NM_001024703, intron 1 of 22)	Arthur1C|DNA|hAT-Tip100	2885.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	3.04437816015043	3.11618064887088	3.47854367141133	3.12280702858539	2.58561873668045	2.67355452446917	2.63869888849719	2.64439439800699	-3.0404388037275	0.000108753520550898	0.0021774871559191
Merged-chr15-76247396-4	chr15	76247275	76247475	+	833.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105918)	promoter-TSS (NR_105918)	568.0	NM_023168	66168.0	Mm.41665	NM_023168	ENSMUSG00000022564	Grina	1110025J15Rik|Lag|Tmbim3	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	protein-coding	3.69350377811226	4.34230482497876	3.96011702487651	3.22077567435184	4.13489780957308	3.98394734115841	4.03439706561688	3.69199702694028	0.268278068051876	0.625927991933292	0.840129896434535
Merged-chr2-119516986-2	chr2	119516886	119517086	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30641.0	NM_172857	241624.0	Mm.212773	NM_172857	ENSMUSG00000048647	Exd1	4932702D22Rik|Exdl1|mExd1	exonuclease 3'-5' domain containing 1	protein-coding	2.97475393199597	3.14611683470426	2.55880785122745	2.69110452934938	2.74845587305143	3.08641589129823	2.96365696952685	3.03174425169358	0.430848794397166	0.518811098311666	0.779745431679921
Merged-chr12-12295136-7	chr12	12295056	12295256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	33017.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	4.66239005914719	4.8673324255708	4.81597555739441	4.39650011360755	4.54182846337821	4.91540414438047	4.79281332322091	5.01190413289261	0.282969499592114	0.436157670491612	0.725034840326081
Merged-chr14-74949086-4	chr14	74949000	74949200	+	952.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1223.0	NM_001033439	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	4.7996665078202	4.65873063712937	4.76202084853521	4.89087404555514	4.8672304804712	4.68398487603772	5.10602272823434	5.09862816443243	0.324566300887657	0.330910722272524	0.642104407905452
Merged-chr3-89421602-4	chr3	89421523	89421723	+	899.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113331)	promoter-TSS (NM_001113331)	2.0	NM_001113331	20416.0	Mm.86595	NM_011368	ENSMUSG00000042626	Shc1	Shc|ShcA|p66|p66shc	src homology 2 domain-containing transforming protein C1	protein-coding	4.25418741547216	4.50259516192632	3.96292192948866	4.12798990621855	4.20986985214956	4.29031274133302	4.23577613183266	4.01405894731393	-0.0842536817817611	0.839280510284991	0.938895262970456
Merged-chr12-100926405-4	chr12	100926288	100926488	+	876.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026681, intron 25 of 29)	intron (NM_026681, intron 25 of 29)	-18190.0	NM_001177673	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	4.15716670543216	4.34650428869137	4.15776889237086	4.21760662339203	4.43877484530035	4.55891653370594	4.23615252690271	4.64941433858956	0.599103212987329	0.117024177319522	0.378500655129107
Merged-chr2-150922355-4	chr2	150922249	150922449	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 4 of 6)	Lx9|LINE|L1	12755.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	5.17606723786429	4.93991396320747	5.08183899607504	5.1434349948767	4.70648607055931	5.40774130987953	5.08920028305953	4.93952013679906	-0.0806389529187494	0.809380919895812	0.926399566100386
Merged-chr9-32540240-4	chr9	32540139	32540339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	1213.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	7.34999918996549	7.56886826826387	7.21260191016422	7.4092287975454	7.27864943519727	7.4871808256313	7.31469247501257	7.03896174094085	-0.144188444973473	0.45546496469216	0.738955495643786
Merged-chr3-116861184-2	chr3	116861078	116861278	+	813.0	f0_c57.idr|f1_balb.idr	promoter-TSS (NM_009146)	promoter-TSS (NM_009146)	-502.0	NM_009146	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	2.70108140380574	3.06714702057602	2.85826854776574	2.6594732954583	3.16598392101087	3.30475510073137	3.33749803830244	3.66764855138057	2.24939298198238	0.000278904943873771	0.00478250421584947
Merged-chr15-81190880-4	chr15	81190785	81190985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015603)	promoter-TSS (NR_015603)	32.0	NR_015603	67638.0	Mm.390832	NM_026288	ENSMUSG00000047938	4930483J18Rik	-	RIKEN cDNA 4930483J18 gene	ncRNA	8.88464921656768	8.89122339086289	8.76791925059331	8.72245335928561	8.788504705838	8.7873773686347	8.92601193169893	8.53671505723977	-0.060623744928384	0.69660218978756	0.877288120223088
Merged-chr1-167306636-4	chr1	167306524	167306724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2046.0	NM_001039483	68944.0	Mm.330045	NM_026881	ENSMUSG00000052428	Tmco1	1190006A08Rik|4930403O06Rik|AA109065|AU022572|ESTM39	transmembrane and coiled-coil domains 1	protein-coding	5.09641442656816	5.50786347991296	5.26697697847295	5.26961107448024	5.68408844042462	5.20211533994375	5.59608330722579	5.38446643762323	0.345602651614262	0.244502441931254	0.555718597382404
Merged-chr12-111122551-2	chr12	111122451	111122651	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43819.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	2.82975798068157	3.05860560628796	2.76033855700091	2.70954444894778	3.14753921613678	3.1301299702117	3.00820746932905	3.0180855737471	1.0199257818608	0.0874593649319847	0.322502726855605
Merged-chr1-80646808-4	chr1	80646715	80646915	+	902.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	18537.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	3.83087145656792	3.89508697276766	4.65132147426568	4.70938101321111	4.07769912817415	3.8926621421479	4.26530406960106	4.09991939952159	-0.625643821739395	0.205298854771041	0.508859472252119
Merged-chr10-93263661-3	chr10	93263523	93263723	+	992.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	47536.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	4.78394037397339	4.91499020064938	4.94594214904275	5.46874282242487	3.7480884694071	4.14343098003075	3.99534957101359	3.94692189880574	-2.74364922119721	7.63350898416973e-10	5.01704096014974e-08
Merged-chr17-33998799-5	chr17	33998667	33998867	+	903.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001892, intron 3 of 7)	intron (NM_001001892, intron 3 of 7)	1566.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	3.39934471483386	3.16579628410629	3.46156034939954	3.01952107320159	3.82000392907227	3.90612974028944	3.50637295808496	4.1104827475993	1.94823735336628	0.000214978590474723	0.00386330643089041
Merged-chr11-59538586-4	chr11	59538480	59538680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2989.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	7.85474458713722	7.82404821776021	7.71051894419808	7.71197345607422	7.62608009319536	7.71392624051232	7.73610299632179	7.52191512610746	-0.161301212610085	0.332267605175152	0.643322793807963
Merged-chr16-38476418-4	chr16	38476330	38476530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359898, intron 2 of 5)	intron (NM_001359898, intron 2 of 5)	17497.0	NM_009855	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	5.86223437305683	5.52258533482324	5.72298173751115	5.99337210590207	5.56933637470874	5.6845591147765	5.69400545747745	5.64252649997981	-0.258723178225742	0.334459876876174	0.645033031163456
Merged-chr2-68978843-4	chr2	68978750	68978950	+	983.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 3 of 10)	intron (NM_001347161, intron 3 of 10)	117409.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	5.24836534258517	5.30719431255942	5.36550577895988	5.67114591085872	4.87385556739408	5.19289130957657	5.06247857138699	4.93762284003353	-0.769185513372027	0.0138210712544831	0.0991004362670346
Merged-chr4-121197183-4	chr4	121197078	121197278	+	978.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346660, intron 1 of 7)	intron (NM_001346660, intron 1 of 7)	17906.0	NM_001346660	109263.0	Mm.215745	NM_001081013	ENSMUSG00000049878	Rlf	9230110M18Rik|AI195322|MommeD8	rearranged L-myc fusion sequence	protein-coding	5.98535850151997	5.9611504132067	5.66328888456901	5.85318993955277	5.74287175891264	5.61210396572848	5.93534140559534	5.26221874725558	-0.338644553360719	0.225203201307461	0.533565878802898
Merged-chr13-23701376-4	chr13	23701280	23701480	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010424)	TTS (NM_010424)	-2922.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	5.45552781583715	5.71931679332262	5.51053149743993	5.3870011204398	5.29698402785215	5.17632279232881	5.45623451957109	5.21015408052243	-0.402246561372665	0.161324943295548	0.450029320380696
Merged-chr6-72550856-3	chr6	72550773	72550973	+	783.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271395, intron 1 of 9)	L3|LINE|CR1	1226.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	4.16010385045791	3.74049094389043	4.07635829054753	4.10242577770765	4.09090047349559	3.90295322774908	3.59484716488502	3.72499276414462	-0.49519205563589	0.293972726418382	0.606364889537559
Merged-chr14-54408473-4	chr14	54408284	54408484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	1088.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	4.72350655404373	4.66963955635253	5.87302224021251	5.40285367024135	4.87090473204626	4.90578969333019	4.97280402805557	4.80505027651746	-0.715493032794896	0.0791384943020423	0.30441082892472
Merged-chr9-54736518-4	chr9	54736418	54736618	+	874.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1969.0	NM_001025375	66317.0	Mm.28437	NM_023191	ENSMUSG00000061559	Wdr61	2700038L12Rik|2810418I05Rik|REC14	WD repeat domain 61	protein-coding	4.93316587392112	4.70849656305626	4.54179390350478	4.72891163853364	4.38106778050145	4.58626416760339	4.43556008143714	4.53889781247665	-0.558813101068372	0.118148474168692	0.38020209968142
Merged-chr5-138255697-4	chr5	138255624	138255824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081108, exon 1 of 4)	5' UTR (NM_001081108, exon 1 of 4)	242.0	NM_001081108	66096.0	Mm.206901	NM_001081108	ENSMUSG00000050552	Lamtor4	0910001L09Rik|AV006840	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein-coding	7.9125328046303	7.5781384706414	7.24656957948326	7.19244674511291	7.91241274803228	7.9262348780421	7.28773471746273	7.32983914499365	0.188369771557587	0.448612015742092	0.733860881331733
Merged-chr1-72106805-4	chr1	72106698	72106898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101603.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	7.71850753199295	7.80094132961977	8.051806832561	7.99067269358634	7.52421206649277	7.79416098434654	8.22231192062811	7.71455164649349	-0.0820873622496172	0.689761866225496	0.873623035418265
Merged-chr12-85474029-4	chr12	85473917	85474117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010234, exon 1 of 4)	5' UTR (NM_010234, exon 1 of 4)	127.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	8.43886838243606	8.83632099875042	8.31965041504251	8.05281705871272	8.73666758429651	8.84679129010325	8.83286463227383	8.6847139861124	0.422210885024819	0.0313011762846556	0.172271431745574
Merged-chr9-64222296-4	chr9	64222188	64222388	+	881.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008927, intron 1 of 10)	intron (NM_008927, intron 1 of 10)	-12913.0	NM_033607	93841.0	Mm.390180	NM_033607	ENSMUSG00000035337	Uchl4	-	ubiquitin carboxyl-terminal esterase L4	protein-coding	4.62731111824341	4.74119353425175	4.54716747844423	4.76352224348622	4.33753466060061	4.79990047888571	4.52644803999847	4.58529506349623	-0.261330020741211	0.468819795299386	0.747933343931938
Merged-chr19-11910685-5	chr19	11910559	11910759	+	909.4799800000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-1740.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	3.70885271495973	3.98961280719725	3.61304265185643	3.79179831884244	3.37198891203908	3.17070071718104	3.13092687997169	3.45075913249644	-1.78092432364877	0.00155681571253881	0.0192550105304605
Merged-chr13-24407020-4	chr13	24406923	24407123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111110, intron 2 of 16)	MER21-int|LTR|ERVL	-8099.0	NM_007717	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	5.1754696092739	5.36099985147986	5.00604024783169	5.23164517026162	4.99724136600008	5.1820504614615	5.32769037292447	5.20425798097055	-0.0554659957715459	0.854627637515829	0.945249640443465
Merged-chr11-94993014-2	chr11	94992918	94993118	+	719.333374	f0_balb.idr|f0_c57.idr	intron (NM_172261, intron 1 of 9)	intron (NM_172261, intron 1 of 9)	1806.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	4.24513743768154	4.35871143595745	3.91728691135639	3.7154252847654	4.10083971042691	4.4151217455249	3.67166831693547	3.96728338899069	-0.0366991250424326	0.939961831626321	0.978363933407335
Merged-chr13-113266757-3	chr13	113266639	113266839	+	794.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57080.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	3.07838005149661	2.97913521289485	3.07875502145829	3.23615291620936	3.04787846551798	3.0591826422671	3.00662280471656	3.39705903731438	0.124975772583348	0.829519086363145	0.934573663797877
Merged-chr13-55536619-4	chr13	55536521	55536721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134059)	promoter-TSS (NM_134059)	37.0	NM_134059	72935.0	Mm.205045	NM_134059	ENSMUSG00000021494	Ddx41	2900024F02Rik|AA958953|ABS|AI324246	DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	protein-coding	8.5740967156066	8.82331340676844	8.10149099821682	8.26117594236223	8.5721201480487	8.84212643804743	8.34870544508954	8.04831585360128	0.0201156215874487	0.929467312202155	0.974513777866012
Merged-chr2-119351049-3	chr2	119350956	119351156	+	742.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026929)	promoter-TSS (NM_026929)	-186.0	NM_026929	69065.0	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	3.39358651063418	3.27304241122237	3.39404198292178	3.29171350462798	3.38696234867506	3.3277402789752	3.32498653512564	3.59634922438341	0.277150050542461	0.587721171734257	0.819334771057997
Merged-chr19-5771297-6	chr19	5771149	5771349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001361921, exon 1 of 17)	exon (NM_001361921, exon 1 of 17)	170.0	NM_023912	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	5.59420987580446	5.55005516753224	5.56949024802242	5.07514569636032	5.35442375070614	5.71694856561008	5.28493020652739	5.64104885805291	0.104024850286945	0.734954128338219	0.895361731750493
Merged-chr9-65568876-4	chr9	65568763	65568963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 2 of 5)	MTD|LTR|ERVL-MaLR	11224.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	7.81576909600359	7.99414081961099	8.20233674118674	7.84730723762949	7.9794670899288	7.95511833374096	7.91860127476457	7.94449087037724	-0.0238847448404846	0.88787757033346	0.957940939153371
Merged-chr17-23969433-4	chr17	23969328	23969528	+	865.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	5802.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	3.68520176876955	3.92426173230957	4.09318465973036	3.8940086822397	4.2081606867017	3.97465570458155	4.07481142317358	3.74213906314701	0.307326000041904	0.491848199244017	0.763211244010156
Merged-chr11-49250544-4	chr11	49250410	49250610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110150)	promoter-TSS (NM_001110150)	-42.0	NM_001110150	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	6.10152820265803	6.23999081858572	6.08090548645447	6.16997623254328	6.34813035775862	6.61483472588971	6.35726408187679	6.27828286443613	0.373832061931164	0.0952037413132273	0.337660426674683
Merged-chr19-6872804-4	chr19	6872739	6872939	+	924.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-14628.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	4.44769168843527	4.86047558574097	4.30661953080781	4.4279510970384	4.72002846776325	4.43611935962751	4.87279739216154	4.68937288560038	0.356663496466549	0.342354627869204	0.651380983250696
Merged-chr5-72241718-3	chr5	72241621	72241821	+	943.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 4 of 22)	intron (NR_003966, intron 4 of 22)	38378.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	3.94654019163357	3.37499149584757	3.66152561294916	4.25934923744806	3.72030275913746	3.2609305988767	3.41695507347464	3.71164570219142	-0.955448666255385	0.0996059178189634	0.346200968037306
Merged-chr2-58160158-4	chr2	58160067	58160267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139200)	promoter-TSS (NM_139200)	-45.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	7.06187078825159	6.63527420444466	6.89473082332872	7.42542908496919	7.22263570950352	7.11307210930165	7.50349157617906	6.84759438566723	0.197511919296281	0.428650088105602	0.71961368508163
Merged-chr5-122093211-1	chr5	122093111	122093311	+	843.5	f0_balb.idr	Intergenic	Intergenic	-7740.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	3.33961541483338	3.31283066746436	4.07830389614483	3.97512784024242	2.78918020383751	2.88301584390343	2.92549394756728	3.08109092114199	-3.57167233112269	4.28949308202101e-06	0.000129483387652745
Merged-chr1-192745666-4	chr1	192745553	192745753	+	941.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 3 of 11)	U5|snRNA|snRNA	25566.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	4.54670972778979	4.47795555962943	4.91267695701578	4.54696441543134	5.09346077179355	5.25070638237122	5.5322666692457	4.54454596204559	1.04273326136426	0.00581582437971811	0.0530859917317204
Merged-chr4-117916014-3	chr4	117915919	117916119	+	941.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1020.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	3.92744146110749	4.31332068827592	4.31826758409873	4.32377398671441	4.71200857621186	4.21322987426974	4.07128345198837	3.98138164221852	0.139041551753104	0.757081101364305	0.904554066545557
Merged-chr3-60570869-4	chr3	60570732	60570932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	69653.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	5.72192651587522	5.2733133646261	5.17439772213568	5.58284779254489	5.43175577648846	5.38459249760095	5.27861858737451	5.26979543743003	-0.208291477753581	0.483767508561347	0.758009278444276
Merged-chr2-117352908-4	chr2	117352804	117353004	+	956.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10027.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	5.75542676222093	5.50572942532584	5.13049248380906	5.54580504294241	5.91241630983229	5.8583604306877	6.10724911548392	5.12704090691459	0.49639539259966	0.129437804300073	0.400360889731452
Merged-chr6-38911371-4	chr6	38911279	38911479	+	911.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7607.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	4.35071699309128	4.6777123004646	4.44006543597276	4.64061759601609	4.54293827481375	4.52511276749963	4.33267335844847	4.52037875147909	-0.137241089911015	0.708955054977691	0.883216904245951
Merged-chr7-101896691-4	chr7	101896585	101896785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291349, intron 1 of 4)	intron (NM_001291349, intron 1 of 4)	354.0	NM_001291349	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	7.56357213414115	7.70510599952812	7.34565599118322	7.45595816488617	7.88709776686295	8.08395809350811	7.818968860762	7.86607152512823	0.513828480541786	0.00349774853844334	0.0360402784044381
Merged-chr2-52426851-4	chr2	52426739	52426939	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1965.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	4.77833022962228	4.89410969290587	4.89426777981817	4.92689402871455	4.93443033557307	4.9155661572727	5.00872766393043	5.3726776743302	0.369220655426749	0.253937122214962	0.565232047724648
Merged-chr4-156216779-4	chr4	156216677	156216877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172417, exon 2 of 4)	5' UTR (NM_172417, exon 2 of 4)	850.0	NM_172417	74183.0	Mm.431343	NM_172417	ENSMUSG00000078486	Perm1	2310042D19Rik	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding	5.97383329735198	5.9420611681132	5.74524117679903	6.10055387159484	5.91963729140504	5.47966912330337	5.92330032971383	5.52207992047554	-0.351197292709729	0.195237766519752	0.496031874040172
Merged-chr1-119648619-4	chr1	119648500	119648700	+	869.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145506, intron 1 of 24)	CpG	400.0	NM_001113416	226352.0	Mm.253156	NM_145506	ENSMUSG00000026383	Epb41l5	1700030C16Rik|AL022914|BE37|E230025E14Rik|Epb4.1l5|Lulu1|NBL5	erythrocyte membrane protein band 4.1 like 5	protein-coding	4.41743507595207	4.15364687232591	4.60209052933071	4.16705004403283	4.19792525387192	3.81687240901768	4.35760459617763	4.37503941035214	-0.322202137985727	0.454230106564417	0.738064300669969
Merged-chr1-4907214-4	chr1	4907147	4907347	+	966.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48919.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	4.14980095540674	4.38874963866255	4.48837155368455	4.29991694122699	4.09581506855152	4.00582615763995	4.35184837239628	4.24107385198906	-0.388589479966092	0.332597174657387	0.643531688755946
Merged-chr7-35145283-3	chr7	35145171	35145371	+	902.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25978.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	4.18090806628501	3.97018696072425	4.04410321155025	4.48924837721941	3.97538850908352	3.95528827056198	4.07395254932428	3.99249481249431	-0.54058842111166	0.215543922332938	0.521736972705799
Merged-chr9-56209044-4	chr9	56208964	56209164	+	759.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 6 of 6)	L1MA5|LINE|L1	-47994.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	3.61541463577093	3.89584799730073	3.83582867199789	3.8268424120057	4.06318146650226	3.60658636089835	3.82001780323801	4.10528229260627	0.339745001072695	0.462839519135465	0.744305592439185
Merged-chr4-59626662-1	chr4	59626562	59626762	+	715.333313	f0_c57.idr	intron (NM_001015681, intron 1 of 3)	CpG	451.0	NM_153158	230259.0	Mm.45688	NM_153158	ENSMUSG00000045071	E130308A19Rik	-	RIKEN cDNA E130308A19 gene	protein-coding	4.14570784519896	3.93590843895604	4.3158738027623	3.84056393250855	4.12913625623497	4.01965067297158	4.12797969823394	4.27281314045662	0.219780307835014	0.605532023096202	0.8289163580969
Merged-chr6-124874976-3	chr6	124874876	124875076	+	934.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013488, intron 3 of 9)	intron (NM_013488, intron 3 of 9)	-10993.0	NM_001355257	14788.0	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	4.2578407835084	4.31040339193348	3.82430563998297	4.00232203258294	4.39488227460842	4.15943262630793	3.86506772536895	3.7639153213282	-0.0776071377532229	0.867975208919382	0.950535454684971
Merged-chr2-120381585-4	chr2	120381496	120381696	+	811.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110497, intron 7 of 19)	intron (NM_001110497, intron 7 of 19)	-22300.0	NM_172672	76051.0	Mm.38851	NM_172672	ENSMUSG00000062646	Ganc	5830445O15Rik|9330160A12|mFLJ00088	glucosidase, alpha; neutral C	protein-coding	3.92721561087018	3.92258288427438	4.03226133035719	4.55619211192948	4.24248548431871	4.04984770777325	4.20009180559559	4.21630229814475	0.0457681695289011	0.919861960048793	0.970406583631903
Merged-chr8-35114156-3	chr8	35114040	35114240	+	673.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148450.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	3.24558104082317	3.12508867034952	3.13547635913152	3.37122620384154	2.94229682122445	2.83806142435038	3.06559208743925	3.13384807431825	-0.949912400912781	0.109052879273161	0.364631477535903
Merged-chr4-129575441-4	chr4	129575400	129575600	+	875.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1859.0	NM_001162433	16818.0	Mm.293753	NM_010693	ENSMUSG00000000409	Lck	Hck-3|Lsk|Lskt|p56<lck>|p56Lck	lymphocyte protein tyrosine kinase	protein-coding	4.44261857193375	4.00082563546766	4.17694474454716	3.90102504915954	4.05399494249689	3.84430081404157	3.76817460273232	3.89071675267332	-0.635427064190628	0.164135305779629	0.454131498487453
Merged-chr10-8757195-4	chr10	8757090	8757290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	128880.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.79389395160582	6.02058897534841	5.657399151102	6.0358515546959	6.37141914129694	6.46053530545712	6.25416186180029	6.07059625950275	0.610816385480039	0.0139463709526086	0.0997276208595263
Merged-chr11-50225281-4	chr11	50225199	50225399	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145926)	promoter-TSS (NM_145926)	-36.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	5.32786152167274	5.3970893686364	5.13772934682271	5.26953307768685	5.48749761944707	5.34700757619204	5.11289361436019	5.41070517221166	0.120308233594485	0.678278214748568	0.868034533256964
Merged-chr9-87022648-3	chr9	87022553	87022753	+	865.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359962, intron 1 of 14)	intron (NM_001359962, intron 1 of 14)	624.0	NM_001359962	266690.0	Mm.30166	NM_024195	ENSMUSG00000032872	Cyb5r4	2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r	cytochrome b5 reductase 4	protein-coding	3.91105415542279	3.80069596310971	3.69834900256035	3.54396117538597	4.06833728626257	3.98342114401725	3.89491525472583	4.17423096949296	0.862197128314841	0.0511562256453205	0.234706899586286
Merged-chr15-100590721-3	chr15	100590618	100590818	+	793.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304965, intron 3 of 10)	RMER6B|LTR|ERVK	-4353.0	NM_010127	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	3.23744949094509	3.22412133320962	3.59558639299603	2.9857122784534	3.13807614542855	3.22642290456726	3.22563026654502	3.29372499750153	-0.182810442978548	0.749656024518998	0.901415182376325
Merged-chr1-74124538-4	chr1	74124457	74124657	+	867.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027884)	promoter-TSS (NM_027884)	-108.0	NM_001289895	21961.0	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	4.50503515972522	3.80938309615227	4.05885344225226	4.13664756855902	4.11180425935979	3.969788691963	4.22096437789913	4.05643750214755	-0.13685145789916	0.755141786668725	0.903608318762915
Merged-chr2-167759497-2	chr2	167759397	167759597	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68320.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	3.77402449425022	3.53592149736978	4.08977232908717	3.89354554548615	3.85121851995138	3.66968913678477	3.27666175737697	3.9617048745891	-0.351739539388496	0.506749099163378	0.772473853800277
Merged-chr6-21985082-4	chr6	21984986	21985186	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081351)	promoter-TSS (NM_001081351)	-824.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	5.84234539293386	5.87193872607426	5.44178926196406	5.96541164702146	5.80595390313752	5.94730446088958	5.35092949413424	5.94890917442341	-0.0365881719228823	0.898574304524174	0.962247369777283
Merged-chr11-82270370-3	chr11	82270274	82270474	+	930.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90562.0	NM_011329	20290.0	Mm.1283	NM_011329	ENSMUSG00000020702	Ccl1	BF534335|I-309|P500|Scya1|Tca-3|Tca3	chemokine (C-C motif) ligand 1	protein-coding	4.58148089436329	4.43928089828312	4.47169643681839	4.2884067344067	3.78113466320755	4.29574451509662	4.19807093229744	4.21395253891365	-0.786286824310969	0.0600423331762066	0.258576550892377
Merged-chr8-85060096-4	chr8	85060005	85060205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026791)	promoter-TSS (NM_026791)	-14.0	NM_026791	68628.0	Mm.374815	NM_026791	ENSMUSG00000008167	Fbxw9	1110017H11Rik|Fbw9	F-box and WD-40 domain protein 9	protein-coding	5.76363962835932	5.63276257154225	5.09452355566705	5.64739275511284	5.33300667182926	5.66216162664369	5.43146443375972	5.69083179988117	-0.059320395828387	0.84285865035137	0.940323698985438
Merged-chr12-99523090-4	chr12	99523005	99523205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-40736.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	5.93375443556411	6.13707020366554	5.95776617976812	6.28210596780186	6.03099698650142	5.93916845522657	5.97190616791985	6.2374065559551	-0.0815524118433275	0.739864105509755	0.897594845257092
Merged-chr5-36554035-4	chr5	36553939	36554139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	B3A|SINE|B2	-23416.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	5.44201684742898	5.37675802341694	5.13859668245742	5.45421391207994	5.11951345974173	5.34810734158425	5.49365982275085	5.13511895203477	-0.162869142820605	0.583200756683295	0.816949076417655
Merged-chr4-134734634-7	chr4	134734544	134734744	+	906.88092	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30354.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	4.37612041578473	4.27190828099754	4.37679708600681	4.49351743315299	4.27350756622428	4.41475325232376	4.47944312841978	4.49741488223736	0.0529081762477571	0.887378025161828	0.957799052224803
Merged-chr8-104321956-3	chr8	104321838	104322038	+	905.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028524)	promoter-TSS (NM_028524)	-289.0	NM_028524	75502.0	Mm.232593	NM_028524	ENSMUSG00000035785	Cmtm2b	1700013O04Rik|Cklfsf22|Cklfsf2b	CKLF-like MARVEL transmembrane domain containing 2B	protein-coding	3.88723920942265	3.91723292290986	3.77689063159435	4.01544631844258	3.78494789169489	4.01070055892837	4.54789678475555	4.0823632127426	0.592491147386148	0.199632576023291	0.501505157364361
Merged-chr18-15665222-3	chr18	15665109	15665309	+	785.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199055, intron 1 of 3)	intron (NM_199055, intron 1 of 3)	52837.0	NM_199055	71367.0	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding	3.3600274580341	3.22841392089265	3.46050409336879	3.21026151492584	2.78316945238116	3.24618401325642	2.92512536858007	3.25020128951692	-1.01050582495983	0.0981042765098161	0.343278158376374
Merged-chr11-75592854-4	chr11	75592767	75592967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008850, intron 2 of 11)	intron (NM_008850, intron 2 of 11)	4788.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	6.46095909775202	6.15458490542907	5.75793066306461	5.85157487143778	5.97623600533872	5.96140461208903	6.18288903474883	5.55634566717939	-0.21728235569189	0.451364424298822	0.735978474724896
Merged-chr14-27429485-4	chr14	27429364	27429564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028945, intron 1 of 23)	CpG	630.0	NM_001114879	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	6.2171290755587	5.98024674407592	6.58719781463644	6.61844169363236	6.55917216113714	6.26804057081447	6.70992331944843	6.45445099744662	0.180675252308022	0.477251371431051	0.753399593177778
Merged-chr9-77544864-4	chr9	77544775	77544975	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172528)	promoter-TSS (NM_172528)	-23.0	NM_001146048	214345.0	Mm.28534	NM_172528	ENSMUSG00000032352	Lrrc1	A430093J20Rik|AU016091|D030059I21|mKIAA4018	leucine rich repeat containing 1	protein-coding	5.49640365527917	5.37787325370601	5.03142082798211	5.66967207582965	5.06831046861312	5.0541234446389	5.59227777685834	5.23500603544777	-0.315238059884151	0.334075913478397	0.644805241742718
Merged-chr13-5867364-3	chr13	5867264	5867464	+	900.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011803, exon 4 of 4)	3' UTR (NM_011803, exon 4 of 4)	5875.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	3.33603265131206	3.9758891226736	3.40027540450014	3.0491535916342	3.47096920156052	3.90042859961743	3.6135973765959	3.62691764700381	0.53733744453947	0.350527724012859	0.658125949394932
Merged-chr5-43384924-3	chr5	43384803	43385003	+	872.166626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130666.0	NM_001135172	109323.0	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding	3.68605954136587	3.6922598977685	3.84291830840596	3.91748794602834	3.42482937200266	3.86053340076012	3.77711413419092	4.06453915571843	0.00134495925194294	0.997801773713162	0.999049532170228
Merged-chr17-5807322-3	chr17	5807234	5807434	+	955.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7844.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	3.69981503371341	3.68739035767853	3.59425968249861	3.99043685308614	3.30708280190686	3.39780957914012	3.82743685059356	3.69820213080308	-0.596645852494841	0.251757744638852	0.563040416191876
Merged-chr3-97231465-4	chr3	97231368	97231568	+	844.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4104.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	3.44870219024481	3.72223260339789	3.57167473444101	3.48832030080502	3.60142592481458	3.80407232388697	3.77100925931202	4.20325423762212	0.898989957093014	0.0648614335091698	0.270857845453165
Merged-chr13-51307786-3	chr13	51307688	51307888	+	957.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100830.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	4.71331003788147	4.30618813300598	4.38163466377388	4.36872343493383	3.97154345716487	4.51125648193483	4.22948655389966	4.19778404613418	-0.519048322381222	0.204739147198448	0.508164019751667
Merged-chr9-72275400-4	chr9	72275246	72275446	+	915.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146224, intron 1 of 21)	CpG	458.0	NM_001311105	235469.0	Mm.242791	NM_146224	ENSMUSG00000038535	Zfp280d	A930005F02Rik|BC027163|Suhw4|ZNF634|Znf280d	zinc finger protein 280D	protein-coding	4.42249782569006	4.12000802299866	4.42321360291585	3.96835900407874	4.27131141997634	4.38157806188221	4.36269431310186	4.20535620417571	0.18545409323287	0.648469786379174	0.852226342288423
Merged-chr15-103514260-4	chr15	103514153	103514353	+	960.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285890)	promoter-TSS (NM_001285890)	-724.0	NM_001285890	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	5.04801500705338	5.2601075986649	4.94351432272256	4.90537083163353	5.09177189593329	5.0820932277205	5.29390333349877	4.86495930837973	0.100939689765947	0.751226348171489	0.902050378109251
Merged-chr6-100439292-3	chr6	100439196	100439396	+	710.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-88104.0	NR_040525	73395.0	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	3.74703490361812	3.60510940013998	3.69571855256037	3.72367651305092	3.55366100686408	3.70232687899824	3.78128637443992	3.93360907506626	0.148650395253286	0.749061093111835	0.901187172003694
Merged-chr12-111172932-2	chr12	111172832	111173032	+	968.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286122, intron 1 of 9)	intron (NM_001286122, intron 1 of 9)	6562.0	NM_011632	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	3.72040877852016	4.02608013737128	3.49804305616584	3.44027784442477	4.03995396633828	3.67482801532065	3.60010279904704	3.43428979652257	0.0805879903571858	0.87935523950871	0.954842749021429
Merged-chr18-4333837-3	chr18	4333726	4333926	+	726.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007746, exon 7 of 8)	exon (NM_007746, exon 7 of 8)	19127.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	3.84652629397255	3.65446425282319	3.89691250603067	4.29191840334764	3.64286310142528	3.9680036401679	3.61308095701854	3.98863201763675	-0.422211203521355	0.393182055510685	0.692367387227111
Merged-chr11-16978149-2	chr11	16978049	16978249	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 9 of 9)	intron (NM_019549, intron 9 of 9)	26739.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	3.94046010690989	3.83430761792629	4.03886791164157	4.63033686147813	3.84515569425769	4.06384555337753	4.02130217451281	3.65709748239585	-0.706021932734974	0.154561360654814	0.439801241388062
Merged-chr4-132260573-4	chr4	132260496	132260696	+	828.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122992, intron 1 of 10)	intron (NM_001122992, intron 1 of 10)	953.0	NM_020273	56809.0	Mm.103489	NM_020273	ENSMUSG00000028901	Gmeb1	1110050A04Rik|AI256615|AI481278	glucocorticoid modulatory element binding protein 1	protein-coding	3.90405978146772	3.79425457228284	4.08721608306745	3.60476060647685	4.01766541880546	3.92343663329878	3.61959560800368	4.04142502499456	0.192317122995705	0.680821880392987	0.868956507598538
Merged-chr16-10498350-4	chr16	10498261	10498461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302619, intron 2 of 19)	intron (NM_001302619, intron 2 of 19)	8580.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	6.26799101050336	6.91424402989145	6.40128516669871	5.71990361859134	6.95313396440339	6.89273436241676	6.68243189609945	5.84519146347306	0.390746800635049	0.249882971556258	0.560979626329492
Merged-chr2-162922315-2	chr2	162922215	162922415	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9193.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	3.45525367821603	3.22930075626637	2.96452610025588	3.25326968489887	3.48086856419287	3.28188210408518	3.33608838004476	3.50375416762473	0.600867576085079	0.271454740576231	0.583222139604812
Merged-chr16-91613179-4	chr16	91613065	91613265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	5834.0	NM_001099738	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	5.98757460206633	6.00437703041899	5.920031890702	5.97011967109789	6.26122071639512	6.22886865453107	6.19966037350335	6.09125993681498	0.354684935395764	0.118212087305041	0.380320812729737
Merged-chr19-14586268-4	chr19	14586169	14586369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302951, intron 4 of 19)	intron (NM_001302951, intron 4 of 19)	10944.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	7.66255081036499	7.67110175052081	7.73646818289386	8.08482876701132	7.47689751921427	7.3979829331125	7.75229230414136	7.2028438234377	-0.443296784532538	0.0299415314039192	0.167035681777534
Merged-chr8-70659768-4	chr8	70659583	70659783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023217)	promoter-TSS (NM_023217)	55.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	6.45421759193927	6.43490561548191	6.35003940751843	6.38562016398669	6.40720439419064	6.61384967158307	6.29923551489946	6.36366691895274	0.0264390548665547	0.902052353412732	0.963666693635782
Merged-chr8-72723279-4	chr8	72723163	72723363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009188)	promoter-TSS (NM_009188)	-7.0	NM_001113248	20467.0	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	6.78461149555354	6.75404431232556	6.53710064044192	6.44823588635093	7.01358445187461	6.82891848612687	7.07152539540548	6.70844874009533	0.410800265887056	0.0540779997136334	0.242791594652246
Merged-chr12-116141415-3	chr12	116141316	116141516	+	606.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009511, intron 10 of 12)	MTC|LTR|ERVL-MaLR	63690.0	NM_009511	22355.0	Mm.395245	NM_009511	ENSMUSG00000011171	Vipr2	VPAC2|VPAC2R|Vip2	vasoactive intestinal peptide receptor 2	protein-coding	3.82737508852126	3.32688488788439	3.77789947042747	3.70315957166749	3.99039431899029	3.79034403113298	3.71081048181595	3.9647102998645	0.589868260915811	0.218688766416743	0.525954253120606
Merged-chr9-22367683-4	chr9	22367574	22367774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028390, intron 8 of 23)	A-rich|Low_complexity|Low_complexity	21532.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	5.66764887412761	5.53533128266432	5.56544860997227	5.82937829327229	5.56021180148715	5.50710960361118	5.58978823033442	5.41962660189121	-0.247551460386118	0.357497102537999	0.663619560848277
Merged-chr12-116449768-4	chr12	116449659	116449859	+	898.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133762, intron 26 of 28)	MTD|LTR|ERVL-MaLR	-35961.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	3.83321096203212	4.21327423862809	4.29476396003212	4.12768687336007	5.68500053608857	4.83305928339417	5.92379574342479	5.58327050711176	2.87920592965165	6.33212014644693e-12	5.93044710399929e-10
Merged-chr16-92410821-2	chr16	92410721	92410921	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	B1F|SINE|Alu	-10743.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	3.72261346369945	3.70078065329724	3.44721643717284	3.1403140890095	3.6825588406289	3.56422552132678	3.80168440764047	3.81652128235293	0.652398144111285	0.209550302350682	0.514046766302012
Merged-chr13-93774002-3	chr13	93773888	93774088	+	974.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009712, intron 1 of 7)	intron (NM_009712, intron 1 of 7)	2309.0	NM_009712	11881.0	Mm.300178	NM_009712	ENSMUSG00000042082	Arsb	1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1	arylsulfatase B	protein-coding	4.19483766949582	4.35986558704916	3.9425068770085	4.10930970780501	3.33576865041094	3.68747653262142	3.28433078148886	3.3656781803276	-2.40275659194144	8.18796866053277e-06	0.000230633724292862
Merged-chr19-5718216-2	chr19	5718107	5718307	+	899.25	f0_c57.idr|f1_c57bl6.idr	exon (NM_001114597, exon 9 of 19)	exon (NM_001114597, exon 9 of 19)	8110.0	NM_001114595	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	2.64117453155551	2.65171038401116	2.64141197269311	2.21258135629059	4.02280947109137	3.28299038606093	3.31927013678058	3.62617667934305	6.92048257210304	5.18141744203258e-13	5.87274063863753e-11
Merged-chr3-31232993-4	chr3	31232877	31233077	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172861, intron 4 of 7)	intron (NM_172861, intron 4 of 7)	77342.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	5.67913053694959	5.60554766335462	6.30560856704959	6.59801974224566	5.17219285083729	4.80648527544102	5.2044549130406	5.48550489822157	-1.57771850635005	1.00519821764166e-05	0.000276357682246101
Merged-chr19-34633649-4	chr19	34633550	34633750	+	938.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053217, intron 1 of 2)	intron (NM_053217, intron 1 of 2)	-3839.0	NM_001362130	112419.0	Mm.440727	NM_053217	ENSMUSG00000067297	Ifit1bl2	2010002M12Rik|AW412491|Ifit1b	interferon induced protein with tetratricopeptide repeats 1B like 2	protein-coding	4.97186899815751	4.74943306311096	5.27275668475683	5.30828849495308	4.66210453022019	4.75913585468921	4.64663773416962	4.93500156682278	-0.709710479637408	0.0412244926608646	0.205426922648256
Merged-chr5-33721888-4	chr5	33721795	33721995	+	830.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163217)	promoter-TSS (NM_001163217)	171.0	NM_001163215	14184.0	Mm.6904	NM_008010	ENSMUSG00000054252	Fgfr3	CD333|FR3|Fgfr-3|Flg-2|HBGFR|Mfr3|sam3	fibroblast growth factor receptor 3	protein-coding	2.99891740777272	2.67928915344998	2.7723523346143	2.64142861586461	2.53847526647701	2.8158865360262	2.63369112400274	2.70743464770663	-0.494386157555079	0.456122321062486	0.739518260919928
Merged-chr1-157537875-2	chr1	157537775	157537975	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159986, intron 9 of 25)	intron (NM_001159986, intron 9 of 25)	11705.0	NM_001159986	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	2.56389597120999	2.77730982556054	2.5641434609362	2.47926850441302	2.61112793747307	2.81104276844023	2.9830741396692	2.94118631805201	1.17992171747938	0.0728043292289732	0.290267145588365
Merged-chr11-46063276-4	chr11	46063152	46063352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291890, intron 2 of 22)	intron (NM_001291890, intron 2 of 22)	7268.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	6.13496650555948	6.21243860868144	5.60899897033	6.20389913669814	6.22218034884273	6.09010591279069	6.78233079920004	6.28625999411644	0.455615254884915	0.100616853267444	0.348252224591462
Merged-chr6-148539033-4	chr6	148538917	148539117	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75292.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	5.97393601604019	5.2708148054381	5.66193493163796	6.1233476274946	5.53709092172197	5.45971106122923	5.77607729647189	5.20613847764458	-0.497163457403469	0.122592595291345	0.388064499699485
Merged-chr13-49189231-4	chr13	49189090	49189290	+	969.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	1643.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	4.64966406209419	4.74465883312833	5.03343241621365	4.46270716601117	4.43838765772898	4.7849346824062	4.70680240447582	4.99957594964514	0.0300740762474588	0.935970557541784	0.97677008152607
Merged-chr8-104103665-4	chr8	104103558	104103758	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 1 of 11)	intron (NM_009868, intron 1 of 11)	2033.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	4.44014375969297	4.86020880412629	4.74824386575564	4.37082935963336	4.52494537179108	4.04000814327718	4.50401826450876	4.56202691205611	-0.414712791177881	0.304420817433891	0.617016042033344
Merged-chr11-105590127-4	chr11	105590080	105590280	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_181071, exon 1 of 26)	5' UTR (NM_181071, exon 1 of 26)	194.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	4.04784606204995	3.88114806301778	4.1373810388724	3.47571647324121	4.06328359626298	3.60196491616352	4.03030864127199	4.33258077492423	0.359236460762537	0.472372605007296	0.750553554939295
Merged-chr12-110373582-3	chr12	110373482	110373682	+	883.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-73597.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	3.13562623173949	3.27205747163692	3.13600592820393	3.16418987570275	3.25432675857231	2.97562671172713	3.18322206922982	3.35539604440115	0.0930901316961524	0.866641464359698	0.950019210311976
Merged-chr10-7210513-2	chr10	7210416	7210616	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172546, intron 1 of 12)	intron (NM_172546, intron 1 of 12)	1721.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	2.56016201793336	2.52496467870179	2.67868336771797	2.35561520706235	2.41917553909715	2.22460393151557	2.61048347703275	2.35915562706272	-0.664005834535059	0.375083490659563	0.67818395563942
Merged-chr9-57565810-4	chr9	57565708	57565908	+	955.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022813, intron 1 of 8)	intron (NM_022813, intron 1 of 8)	4864.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	5.23221546236664	5.04285778842803	4.91056852048229	5.11975863609079	4.56482469351042	4.97228119686175	5.02494468802139	5.11028636970873	-0.316167219473382	0.344447132173847	0.652914285727938
Merged-chr9-78477392-3	chr9	78477322	78477522	+	894.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4302.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	3.56540276490413	3.74233796202107	3.4038643719464	3.46730427170809	3.58324207600022	3.32999276554865	3.27247100253661	3.34334373493052	-0.517020101876826	0.325272686898318	0.636829810230371
Merged-chr4-123921270-4	chr4	123921151	123921351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017475, intron 3 of 6)	intron (NM_017475, intron 3 of 6)	3818.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	6.69610267103699	6.94641870630968	7.0539465742792	6.91506339558399	6.70553015323083	6.46536361022862	6.779324574601	6.95353052918242	-0.241639766540193	0.254653332223223	0.566102425180865
Merged-chr2-120432181-4	chr2	120432083	120432283	+	925.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172672, intron 10 of 23)	HAL1|LINE|L1	-28067.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	4.38540219917925	4.83228581659802	4.57119213342724	5.0021411332989	4.9687260677432	4.3007055268105	4.67270253877033	5.14711023609068	0.1702186494724	0.676702401484576	0.867245059450191
Merged-chr19-11813340-4	chr19	11813254	11813454	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	6049.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	4.70873891026536	5.21458628354331	4.28842663551608	4.12589292355995	4.86731889377465	4.84641703252096	3.73773751748028	4.12840592139358	-0.412277131623297	0.643166006078533	0.849459897971419
Merged-chr5-36596442-3	chr5	36596346	36596546	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-10220.0	NM_001113362	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	3.47597301725003	3.6298839910337	3.64080893028788	3.2997355829007	3.5149995185102	3.85985672728079	3.46334362522085	3.63867799452803	0.371634555427398	0.458988113951339	0.741698033121648
Merged-chr1-15805586-4	chr1	15805497	15805697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152944)	promoter-TSS (NR_152944)	-49.0	NM_009352	21749.0	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding	8.18634880060863	8.22339579153788	8.17534197298113	8.53171187814606	8.47796693686681	8.45430628754292	8.65259593101632	8.23641812170787	0.212828436964256	0.227215044919608	0.535909590131417
Merged-chr10-86779742-4	chr10	86779677	86779877	+	991.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175331, intron 1 of 13)	intron (NM_175331, intron 1 of 13)	772.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	5.11275457635309	4.82012705085457	5.37410050384519	5.10303325065449	4.58998987733386	5.11762290734485	5.18062967559752	5.17276397112168	-0.166164622118147	0.632201177275097	0.843743440414307
Merged-chr3-116651172-3	chr3	116651077	116651277	+	701.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008246, intron 2 of 11)	intron (NM_008246, intron 2 of 11)	11500.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	4.20044884744583	4.51364346085099	4.02846751392769	3.60013056332546	3.78993429777896	3.83854182468823	3.75884613587893	3.59228384129065	-1.04501275318061	0.0407682596688212	0.204130380567611
Merged-chr12-8500058-4	chr12	8499954	8500154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007483)	promoter-TSS (NM_007483)	-45.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	9.31228119512475	9.55953110458894	9.53104067091069	9.62029131228499	9.50792726284483	9.65562002081036	9.83424401858125	9.60035397884378	0.171663121260515	0.254001800293218	0.565322977488853
Merged-chr2-141030872-4	chr2	141030771	141030971	+	942.354126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 5 of 18)	intron (NM_001013802, intron 5 of 18)	-359395.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	4.21239222549232	4.35422001411437	5.03557456151782	4.51354552953103	4.66127186530753	4.2873874161881	4.75727526363976	5.14209546829259	0.388336654792002	0.364171582781743	0.66908692803749
Merged-chr17-67341690-4	chr17	67341598	67341798	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	12761.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	5.83534892336947	5.68125858893356	6.23954035184521	6.18612535241527	5.60234390095247	5.23273895718645	5.50220158262247	5.30678585168247	-0.969672957913681	0.000872542520908527	0.0120712738767246
Merged-chr2-91112694-3	chr2	91112593	91112793	+	967.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011355, intron 2 of 4)	intron (NM_011355, intron 2 of 4)	-5451.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	4.74714488680797	5.10555053622566	4.31039080882842	4.946214247267	4.21781930048965	4.17823507427846	4.03379422576745	3.9892009567097	-1.65701245321059	9.86972069362667e-05	0.0020083386199304
Merged-chr10-93070841-4	chr10	93070749	93070949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347060, intron 1 of 67)	intron (NM_001347060, intron 1 of 67)	10747.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	8.20084750273575	8.2723139441025	8.1478309048183	8.04416904097873	8.1009742752469	8.24901452744445	8.20974898064975	8.07267991682651	-0.00836640449776991	0.957674802194535	0.984870901124062
Merged-chr7-4812358-3	chr7	4812264	4812464	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133777)	promoter-TSS (NM_133777)	-24.0	NM_133777	77891.0	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	6.41974870086623	6.54469323702892	6.28361201130653	5.88433404203463	7.04926564282171	7.22770769207293	7.02715505055051	7.06908860670192	1.15334377598217	6.35916780594274e-07	2.31292388992947e-05
Merged-chr2-116913729-4	chr2	116913632	116913832	+	748.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040335)	TTS (NR_040335)	13580.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	3.6656411737619	4.18857146239783	3.7765122059756	3.765778318078	3.97045612945301	3.45794654219481	4.08275803389314	3.77438602939045	-0.0510329619844279	0.918620682501397	0.970054173425813
Merged-chr1-144317790-4	chr1	144317692	144317892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68688.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	8.11016546323244	8.22989101980532	8.40092964176646	8.34596533065513	7.5101166502274	7.66498557846628	7.73712916509994	7.57885189919466	-0.851073160690867	3.58963110731338e-07	1.37000725247967e-05
Merged-chr19-53781024-4	chr19	53780927	53781127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	103721.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	5.26341381356692	4.85197692175164	5.07733090407734	4.96030251709726	5.2889879798948	4.91353468622304	5.44666656933482	5.13931511773031	0.342378165796115	0.283305718265765	0.595360804251864
Merged-chr4-139232627-4	chr4	139232522	139232722	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	38511.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	4.57839393954159	4.41543389546917	4.2318409902128	4.73023234043032	4.39973833017401	4.358979791152	4.59472861353931	4.41443674949329	-0.16985319322486	0.658136108806913	0.857677183558236
Merged-chr2-144266084-4	chr2	144265968	144266168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_030762)	TTS (NR_030762)	134.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	7.3026957102509	6.89123445270144	7.78793395114159	8.03505500118138	7.10928031572329	6.78357172373863	7.46185298696253	7.41943758478415	-0.485703267105882	0.0840248055464265	0.31522698750799
Merged-chr7-68087699-3	chr7	68087595	68087795	+	924.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	135438.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	3.66432841182869	3.37861559942924	3.7672384103188	3.75539187720638	3.42677748497601	3.83643032256454	3.70159121902583	3.85960228168685	0.171412327392336	0.730318032297196	0.893000516342052
Merged-chr8-123318597-4	chr8	123318493	123318693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016925)	promoter-TSS (NM_016925)	-17.0	NM_016925	14087.0	Mm.6536	NM_016925	ENSMUSG00000032815	Fanca	AW208693|FACA	Fanconi anemia, complementation group A	protein-coding	7.26967766033749	7.13292165406869	7.03808863869314	7.52091416997713	7.37059892305194	7.12309137115397	7.50916354974316	7.15487631011553	0.0486590136551339	0.815295905955014	0.928718235748118
Merged-chr6-72881824-1	chr6	72881724	72881924	+	630.0	f0_balb.idr	intron (NM_019715, intron 1 of 6)	MTD|LTR|ERVL-MaLR	17468.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	3.56495836014386	3.23781885542155	3.1790703535186	3.22327268440568	3.23080049035167	3.58266110537363	3.28932742419473	3.29998969907285	0.173303129169113	0.748296485434514	0.900930235736524
Merged-chr9-37086333-3	chr9	37086237	37086437	+	870.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 1 of 12)	Lx8b|LINE|L1	60985.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	3.78859472117033	4.04031816226112	4.01692577204289	4.58185989962322	2.88570436924515	3.20941286578544	3.1598836268687	3.31539454392824	-4.16724080742935	5.69189249327994e-08	2.575608491921e-06
Merged-chr11-114702813-4	chr11	114702711	114702911	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 6 of 13)	intron (NM_053273, intron 6 of 13)	-24601.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	4.36210343037647	3.87296523177618	3.96727483095856	3.97376256221631	4.77400698742422	4.53561463822157	4.537921013486	4.40190580985896	1.26208663872167	0.00153405055064643	0.0190222670949594
Merged-chr7-27604882-4	chr7	27604784	27604984	+	988.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007434)	promoter-TSS (NM_007434)	-913.0	NM_007434	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	4.89266329570559	4.88556514565085	5.58291406187033	5.50938859872969	6.56629195184004	6.54605575478921	6.93133899733174	6.42856914774057	2.12398567594647	1.62490930334226e-11	1.41913397917299e-09
Merged-chr16-36718670-4	chr16	36718622	36718822	+	973.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285791, intron 5 of 6)	intron (NM_001285791, intron 5 of 6)	24744.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	4.89204549901616	4.76773262218106	4.78430026820247	5.09742738611049	4.74423208338929	4.62050321117681	4.76182127866989	4.95699509850128	-0.268679170210348	0.428668327562413	0.71961368508163
Merged-chr14-58071169-4	chr14	58071015	58071215	+	622.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1571.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	3.14099275299508	3.13065097151842	3.14140549462991	2.8895182830267	3.0822348097719	2.91567430780066	3.06978626980676	3.54146623699465	0.392024202080412	0.51195870938475	0.775668292015302
Merged-chr8-83596597-3	chr8	83596499	83596699	+	731.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12|LTR|ERVK	-2108.0	NM_134118	106529.0	Mm.352239	NM_027179	ENSMUSG00000031708	Tecr	2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|SC2	trans-2,3-enoyl-CoA reductase	protein-coding	3.50370306149815	3.44912061408413	3.23188261469427	3.2935819178578	3.28489467073517	3.4037893504176	3.09510105366157	3.23029048324462	-0.411280958827479	0.445939064727278	0.731738237991726
Merged-chr9-40872203-5	chr9	40872147	40872347	+	827.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1880.0	NM_178245	244813.0	Mm.261652	NM_178245	ENSMUSG00000054360	Bsx	Bsx1a|Bsx1b	brain specific homeobox	protein-coding	3.92882753779342	4.08892437316828	4.03650933668481	3.53711609291032	4.50211137517213	4.31075172828699	4.29352095611288	4.53826796400737	1.33567734980688	0.00186095949384407	0.0221285058156243
Merged-chr9-57831497-4	chr9	57831391	57831591	+	913.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019689, intron 1 of 7)	intron (NM_019689, intron 1 of 7)	2743.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	4.4487617908075	4.61483133634851	4.41016202003145	3.82885331753243	4.30232015274872	4.05733607255436	3.85887681272248	4.44652912723644	-0.396378142017078	0.397006741009162	0.695569405558829
Merged-chr13-92804526-4	chr13	92804418	92804618	+	967.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9700.0	NM_011582	21828.0	Mm.20865	NM_011582	ENSMUSG00000021702	Thbs4	TSP4	thrombospondin 4	protein-coding	4.73213617820437	5.16448838957033	4.63505713838443	5.17526724819747	5.70645346575424	5.62129123501392	5.70962622386893	5.79869090427018	1.30064206203781	5.0294421784258e-05	0.00113756169309873
Merged-chr2-160068080-4	chr2	160067974	160068174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51421.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	6.95626126218443	6.46990295580515	6.58822909949279	6.73755629214377	5.50631736298531	6.32738777276873	5.86436166628555	5.8645215248697	-1.19786023618445	9.22781784308214e-06	0.000256372695649002
Merged-chr2-38336709-3	chr2	38336599	38336799	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2582.0	NM_001290646	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	4.05637718979057	4.24599897276832	4.09931860372705	3.48027509708758	3.64695552915758	3.77694331446641	3.5833518363552	3.7116757672156	-0.915900065250019	0.0731508600920895	0.29111226084385
Merged-chr5-90771979-1	chr5	90771879	90772079	+	955.0	f1_balb.idr	promoter-TSS (NM_019932)	promoter-TSS (NM_019932)	-456.0	NM_019932	56744.0	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	3.27290891613145	3.10422379723363	3.1035481186519	3.1301241472822	3.13500519598688	3.08441257241186	3.20668682464995	3.10202567561138	-0.0736526389124742	0.89337291981098	0.960146557262646
Merged-chr5-113008241-2	chr5	113008141	113008341	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	7297.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	2.8025751957417	2.75221059781626	2.80295885220491	2.44585841695699	2.41730528651602	2.85062421547858	2.60051753472414	2.80140721248593	-0.141297326586017	0.839643732294671	0.93897785072825
Merged-chr15-75678767-4	chr15	75678681	75678881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355589)	promoter-TSS (NM_001355589)	19.0	NM_001355589	72960.0	Mm.182401	NM_028404	ENSMUSG00000000934	Top1mt	2900052H09Rik	DNA topoisomerase 1, mitochondrial	protein-coding	6.489062507465	6.41825201128137	6.14202810860752	6.45958270252595	6.16366293251898	6.31884125677977	6.28666986902144	6.31447145838289	-0.186241782433994	0.405213585197036	0.702180446454354
Merged-chr4-139230951-4	chr4	139230863	139231063	+	873.49585	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	36852.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	4.36486870035463	4.14160230246968	3.97178043383385	4.19384179359452	4.17457416451198	4.730512259308	4.25852817580065	4.62950430069325	0.678450157893032	0.0998453708283852	0.346609234862679
Merged-chr4-35240077-4	chr4	35239964	35240164	+	930.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14184.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	4.738732819779	4.8468844907762	4.88652394041112	5.17356664877706	4.77588194402719	4.56491721946572	4.92998296151125	4.61405267678351	-0.423489917200635	0.22601810338584	0.534601871393655
Merged-chr6-134172097-1	chr6	134171997	134172197	+	773.75	f0_balb.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	136397.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	4.04686076863147	4.11606390932294	3.81560947232297	3.7953145199645	3.6452011627735	3.77167512463269	3.74855171917122	3.59256389207791	-0.759520380526223	0.102304277505519	0.351240409442665
Merged-chr16-95821162-4	chr16	95821065	95821265	+	985.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77548.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	4.96492737075308	4.71254110654605	4.70440332812417	5.22103122584007	5.12063220076645	4.61184317588739	4.8729753437274	4.99566457069774	-0.0282518446785901	0.937261960441148	0.977282228830088
Merged-chr19-56723967-4	chr19	56723877	56724077	+	930.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007419, exon 1 of 1)	3' UTR (NM_007419, exon 1 of 1)	1605.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	3.46695625692115	3.45548458546802	3.68708206558884	3.69635906832966	3.64312755070141	3.85399469135151	3.56787720498009	3.68496036059435	0.311765563303004	0.516952625566233	0.778590159440942
Merged-chr7-45471156-4	chr7	45471098	45471298	+	826.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4300.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	3.11127321782088	3.25141273188624	3.47779574225436	3.39771848457254	3.55012310982801	3.53813786168554	3.35413330002583	3.62595906889449	0.67562982588427	0.195115125870891	0.495879585259548
Merged-chr16-44986287-4	chr16	44986202	44986402	+	934.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	42624.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	4.83579488457783	4.44822620812218	4.76304887096928	4.88698344652483	4.96397433512633	4.7778022136526	4.91540889355407	4.72154111369447	0.20786060012772	0.545509761297168	0.795940029589181
Merged-chr18-75839503-5	chr18	75839470	75839670	+	957.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 1 of 4)	intron (NM_145356, intron 1 of 4)	19392.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	4.16548174824469	4.37898012477623	4.48598046432437	4.27273142874853	5.04698298203395	4.84393826930861	5.22819884242092	5.63211589074472	1.82423227222397	7.1721682737992e-07	2.58092904732434e-05
Merged-chr4-32561902-4	chr4	32561799	32561999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_026843, exon 4 of 5)	non-coding (NR_026843, exon 4 of 5)	9763.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	7.05702733337795	6.80595477513543	7.53315486234545	7.52283547139026	6.59311374529285	6.99838254322774	7.15879654992555	6.55871719049953	-0.582764303024187	0.0234276290200698	0.142064679333749
Merged-chr2-14159950-2	chr2	14159850	14160050	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14574.0	NM_001081310	625286.0	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	3.08340841287541	3.5019750847219	3.01689101291036	3.28519140159926	3.29358852410807	3.54274251672662	3.2561930533314	3.26657378448599	0.370460863552099	0.511946421057337	0.775668292015302
Merged-chr12-101083672-4	chr12	101083616	101083816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_211355)	promoter-TSS (NM_211355)	-14.0	NM_001160214	68734.0	Mm.87077	NM_211355	ENSMUSG00000041846	Ppp4r3a	1110034C04Rik|BC064465|Smek1|mKIAA2010	protein phosphatase 4 regulatory subunit 3A	protein-coding	7.28919941227539	6.98166130069326	6.41903315981596	7.18850500574068	7.32419772237098	7.44655646197096	7.27438408044179	7.5365725770247	0.514360612930478	0.0268530795299428	0.155780738349564
Merged-chr12-54927651-3	chr12	54927560	54927760	+	640.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013815, exon 12 of 27)	exon (NM_013815, exon 12 of 27)	58676.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	3.10144879016312	3.00118579765512	3.32483107413398	3.50258710622162	2.88845247369108	2.93968441912079	3.20558689424022	3.15967206762847	-0.806575062302666	0.187036065069736	0.485282006509649
Merged-chr1-171183685-3	chr1	171183609	171183809	+	907.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025557, intron 1 of 2)	intron (NM_025557, intron 1 of 2)	12559.0	NM_025557	66425.0	Mm.482117	NM_025557	ENSMUSG00000038370	Pcp4l1	1500036F01Rik	Purkinje cell protein 4-like 1	protein-coding	3.66246972860348	3.47166461582454	3.28425589077091	3.01150515040947	3.98655465694654	3.94323391033535	4.1018558437801	3.91067163387304	1.96922828880989	0.000132325804852821	0.00256783491374562
Merged-chr10-7212251-4	chr10	7212159	7212359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172546)	promoter-TSS (NM_172546)	-22.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	7.47734502543259	7.7838653865135	7.34931513381581	7.46592726211852	7.49915467424249	7.76424089900105	7.45105517001985	7.37524119427366	-0.00224146695200774	0.990721215824103	0.996376480694367
Merged-chr1-131671307-4	chr1	131671195	131671395	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007799, intron 7 of 9)	intron (NM_007799, intron 7 of 9)	-17400.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	4.97549320881549	4.89704876511873	4.59469036330034	5.12942666826889	6.03477094010922	5.85061743508079	6.26600769893077	6.0485807058284	1.90978807114181	8.39710924274288e-10	5.46341717357583e-08
Merged-chr7-4796167-4	chr7	4796046	4796246	+	851.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	3181.0	NM_009081	19943.0	Mm.379002	NM_009081	ENSMUSG00000030432	Rpl28	D7Wsu21e	ribosomal protein L28	protein-coding	4.14812148353243	4.2785419949294	4.28199923865472	3.97140715313348	4.32281598275428	4.36581703712091	4.08361415536324	3.94438697279372	0.074308772410014	0.858834994933393	0.946576014812915
Merged-chr9-113928793-4	chr9	113928693	113928893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2141.0	NM_001083319	22221.0	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	7.17225546582656	7.23718363088076	7.0699683757447	7.15272930881304	6.88973252144181	6.7910025244864	7.29247583700387	6.9521886030246	-0.227866913641597	0.256777445495731	0.568480006866985
Merged-chr11-62539040-7	chr11	62538894	62539094	+	938.0476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028448, exon 1 of 5)	exon (NM_028448, exon 1 of 5)	267.0	NM_028448	73139.0	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	3.93510949979074	4.09920149800202	3.88448352963523	3.9238783892799	3.9971729184431	3.89483949502253	4.10397983700686	4.11975917392626	0.188835142831268	0.652850658193005	0.854764223296605
Merged-chr9-57888241-4	chr9	57888119	57888319	+	977.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAAA)n|Simple_repeat|Simple_repeat	-22767.0	NM_027086	69459.0	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	5.40464943299649	5.07882836478293	4.87310136470897	4.76539799104571	5.2005894817124	5.01135713229985	5.15689860464636	5.08405522076943	0.155950762978813	0.637953462313157	0.847040716325261
Merged-chr12-105781529-4	chr12	105781419	105781619	+	976.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030187, intron 17 of 17)	intron (NM_030187, intron 17 of 17)	-3178.0	NM_011112	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	4.30613499567349	4.82158095210187	4.84792075675638	4.94671356665432	5.34125993432756	4.64627380274312	4.86085157946204	5.25146991721383	0.592993567641368	0.121599564477793	0.386243714577393
Merged-chr11-8676825-3	chr11	8676736	8676936	+	913.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa-int|LTR|ERVL-MaLR	-12301.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	3.40187450078011	3.5914606685948	3.40227671786685	3.37935897108387	3.99161183845059	3.51825629278087	3.81729644154764	3.96246896712127	1.23033841598374	0.0110534305886857	0.0847449521620052
Merged-chr6-39724915-4	chr6	39724852	39725052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139294, intron 1 of 21)	CpG	511.0	NM_139294	109880.0	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	4.7274367865368	5.36887489125797	5.02108227006497	5.32597517749166	5.48168605383326	5.60740559493974	5.51096784772517	5.31756280158944	0.586367922031	0.0652750684694954	0.271946976797788
Merged-chr6-129682924-2	chr6	129682826	129683026	+	598.5	f0_c57.idr|f1_balb.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-3953.0	NM_010652	16641.0	Mm.56899	NM_010652	ENSMUSG00000030167	Klrc1	CD159a|NKG2A|NKG2B	killer cell lectin-like receptor subfamily C, member 1	protein-coding	3.32050079339982	2.98152543736948	3.3782913351386	3.23917333843934	3.50963367808865	3.60252729933506	3.24929646447838	3.53432527960835	0.854910056805261	0.111936926664336	0.369743500552577
Merged-chr12-102368257-4	chr12	102368146	102368346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	71567.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.8399651447129	6.98813715104272	7.45758003462745	7.28994372076418	6.99193948320664	6.94472842191198	7.20975446283149	7.06095179514197	-0.159578431908659	0.457741695114794	0.740780149521773
Merged-chr3-152122311-3	chr3	152122209	152122409	+	910.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016867, intron 3 of 5)	intron (NM_016867, intron 3 of 5)	43591.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	4.34946304544652	4.60027253048822	4.35021863242287	4.57989532571083	3.13615683409281	3.51956182633441	3.5281392321463	3.53892935868519	-3.56327284330757	1.84207132572755e-09	1.12353723131072e-07
Merged-chr6-142715099-4	chr6	142715007	142715207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12833.0	NM_001310143	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	5.69723048368953	5.33146203061435	5.99098323384141	6.22220390490978	5.41441437795176	5.39321253711431	5.85614146904874	5.79164681456962	-0.392445129346386	0.220376643052658	0.528243444210983
Merged-chr3-146152454-3	chr3	146152378	146152578	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	2304.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	5.88841090282802	5.88094989888962	5.83381552638427	6.17261948292442	3.52558991352367	4.00454678221342	3.84446230480188	4.07525565860019	-5.93033594723822	8.08617406348532e-18	2.02664008332684e-15
Merged-chr1-156860021-2	chr1	156859917	156860117	+	904.875	f0_balb.idr|f1_balb.idr	intron (NM_028333, intron 4 of 4)	intron (NM_028333, intron 4 of 4)	20994.0	NM_028333	72713.0	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	3.9869984669168	4.05658053518659	3.89002891346646	4.21612208659415	3.54928181315637	3.95913176741981	3.76973244025109	3.98517960585799	-0.663679562002678	0.148958662973441	0.430917645673096
Merged-chr7-45742055-3	chr7	45741914	45742114	+	718.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360784, intron 1 of 5)	polypyrimidine|Low_complexity|Low_complexity	464.0	NM_001360784	54200.0	Mm.271634	NM_017465	ENSMUSG00000003271	Sult2b1	AI326997|BB173635|ST2B1|SULT2B	sulfotransferase family, cytosolic, 2B, member 1	protein-coding	2.74509950340973	2.67767979485145	2.66456969320665	2.7659947841488	3.22370381678967	3.32772493860941	3.35310023020467	3.63305047937058	2.81095456430801	3.57784299555767e-05	0.000844387554976125
Merged-chr19-12796267-4	chr19	12796162	12796362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024093)	promoter-TSS (NR_024093)	69.0	NM_001361971	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	8.29057182432596	8.33654631190932	8.36773316392073	8.16295045959718	8.32559399934468	8.31523182910428	8.26409725677597	7.98489566096625	-0.0705936657586074	0.666713052037946	0.862099084982087
Merged-chr17-26481150-3	chr17	26481030	26481230	+	793.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27342.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	3.4350600572788	3.56163201640635	2.99064782340526	3.0935210251912	3.58718660681755	3.65704488422956	3.25086062566773	3.26093835289552	0.570546110372468	0.324573400388464	0.636154479217255
Merged-chr10-22730580-2	chr10	22730480	22730680	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011603, intron 1 of 6)	intron (NM_011603, intron 1 of 6)	867.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	3.40868249329318	3.18062183536662	3.50899248582674	3.07873749906721	2.99692750854289	3.29580610920635	3.39466044371621	3.11789107702861	-0.339731099187716	0.555135750441445	0.801243003883125
Merged-chr11-95859700-2	chr11	95859576	95859776	+	963.75	f0_balb.idr|f0_c57.idr	intron (NR_045187, intron 1 of 1)	CpG	859.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	4.76965573024078	4.59263499407949	4.57743529895062	4.65353122759104	4.6473929502143	4.62269047456941	4.55657122162409	4.93435982977457	0.101516163637673	0.769731965507656	0.909839341090846
Merged-chr3-89865105-4	chr3	89865024	89865224	+	909.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33754.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	4.14482278627792	4.26366083537133	3.84073885589047	3.82367497349448	4.31720157020745	4.07332517470684	4.1271347784499	4.18729264802703	0.420094437174126	0.324379917573717	0.636009094371804
Merged-chr15-58616899-4	chr15	58616800	58617000	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	201432.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	6.16023585979506	5.57550139317856	6.23232388852213	6.10361730105022	5.80059029841819	5.37957466356594	5.70019715649477	5.84777560339215	-0.548980995725618	0.0537328140227238	0.241971449520695
Merged-chr13-42528353-4	chr13	42528246	42528446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-152453.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	7.37402761057292	7.63109217167668	7.87962187645939	7.70487989930932	7.63371238118565	7.57378554034476	7.73160411287067	7.77176265762832	0.0229011044310884	0.900377032549576	0.963086977653908
Merged-chr15-75715085-3	chr15	75714971	75715171	+	876.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008164)	TTS (NM_008164)	10783.0	NM_008164	14787.0	Mm.57052	NM_008164	ENSMUSG00000022580	Rhpn1	BB023497|Grbp|Rhophilin|mKIAA1929	rhophilin, Rho GTPase binding protein 1	protein-coding	3.43565103190694	3.70630518976983	3.61366749988881	3.59082551580833	3.67292711223572	3.9856437206759	3.75395569141436	3.66585467636096	0.546734037510335	0.245404246705991	0.556488861584813
Merged-chr7-101538285-4	chr7	101538176	101538376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17526.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	6.70536832550982	6.51572076853446	6.35701169251352	6.26856214827236	6.50483391317023	6.62118738110204	6.1487541777962	6.3524650950554	-0.0615475211187624	0.794804273358458	0.92061077545697
Merged-chr5-97002482-3	chr5	97002395	97002595	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	4806.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	3.91388568905143	3.43209636544654	3.9590637748535	3.92649441133223	3.66344195281415	3.53849052682428	3.80406727249167	3.76824911512989	-0.385912169427843	0.430136959428469	0.720766482300462
Merged-chr12-79444878-2	chr12	79444778	79444978	+	697.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	147527.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	3.16243924961922	3.21045429862413	3.28233516859236	2.9118420047095	2.97603077021381	3.33875144493033	3.26919192981467	3.62766321082087	0.661924931270204	0.257312311904109	0.56907882951226
Merged-chr5-115624238-4	chr5	115624141	115624341	+	964.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7575.0	NR_027810	66123.0	Mm.133063	NM_021417	ENSMUSG00000107121	1110006O24Rik	-	RIKEN cDNA 1110006O24 gene	ncRNA	4.5439502297476	4.64288646399837	4.74960062352083	4.6957447068843	4.90502814673568	4.95893565924237	4.8001795136766	4.82000667541942	0.43474131927464	0.185758274480746	0.483634024587642
Merged-chr7-79936707-4	chr7	79936609	79936809	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1445.0	NM_027420	70420.0	Mm.34266	NM_027420	ENSMUSG00000039043	Arpin	2610034B18Rik	actin-related protein 2/3 complex inhibitor	protein-coding	4.68090033523186	5.32556274559965	4.19536038083677	4.53145885685535	5.17682682431282	4.89741412422693	4.88162233126693	4.59451465278017	0.313404001133183	0.463628403215219	0.744917859923164
Merged-chr9-102988717-4	chr9	102988577	102988777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19812.0	NM_033314	24059.0	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	4.93134505458125	4.68136708900206	4.96726030622747	5.22832307084314	5.07994365580356	5.03337383227886	5.01016639402776	4.81752300318574	0.0146063791958973	0.965313968481558	0.98773892676493
Merged-chr4-86672467-4	chr4	86672376	86672576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2417.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	5.24716198671337	4.87108310029026	4.7942386778037	5.00907848225394	4.82407699865611	4.71727007618055	5.1379728174554	4.75157731463743	-0.243961039679904	0.470770913979306	0.749407409002394
Merged-chr3-103801962-4	chr3	103801848	103802048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133865, exon 4 of 4)	3' UTR (NM_133865, exon 4 of 4)	-1181.0	NR_040412	100503157.0	Mm.445554	NR_040412	ENSMUSG00000084997	Gm15471	-	predicted gene 15471	ncRNA	6.91884404144469	6.41327615829449	7.01598230209197	7.06024395308473	6.31543123758272	6.14122100450477	6.66855116838844	6.96400315310582	-0.455538603874618	0.0907782548669842	0.329176793910463
Merged-chr9-20644824-4	chr9	20644727	20644927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286530)	promoter-TSS (NM_001286530)	24.0	NR_153859	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	6.39650936821342	6.57860130695637	6.0280760407083	6.47806507906535	6.61416385372458	6.23080386188251	6.41694638693905	6.83773240759872	0.226465231441434	0.361252551139348	0.666604327721979
Merged-chr6-116010768-4	chr6	116010666	116010866	+	899.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15761.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	4.49490542803276	4.5675428649264	4.1750771270569	4.34020614247471	4.61147467005604	4.58444799132941	4.51442987841275	4.36511085273013	0.285698404779773	0.442266771414718	0.729012256605129
Merged-chr12-104290045-4	chr12	104289949	104290149	+	819.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ETnERV2-int|LTR|ERVK	-24521.0	NM_001101472	238395.0	Mm.436975	NM_001101472	ENSMUSG00000079013	Serpina3j	AI506554|EG238395|Gm4931	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3J	protein-coding	3.95218588329018	3.70626226231193	4.35794370013149	4.03617397096344	4.5480269618397	4.17930578437293	3.93663420358519	4.09998758591759	0.481646851314729	0.294084689545721	0.606446191202461
Merged-chr11-20741838-7	chr11	20741693	20741893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290545)	promoter-TSS (NM_001290545)	-237.0	NM_181411	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	6.68938460134729	7.24195068265448	6.93710453597898	6.38367837054262	7.26018025519036	7.33072613173496	7.07331083412221	7.09261466931728	0.486059494164023	0.044473703493308	0.215083145872413
Merged-chr2-22781628-4	chr2	22781526	22781726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	L1_Mus4|LINE|L1	7299.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	5.23659466097103	5.8885805712347	5.17117114488954	3.81996681509429	5.96629598148871	5.95686799224139	5.36196726781407	4.58075422199644	0.539167572318973	0.520633973361336	0.780863196718921
Merged-chr8-4521655-4	chr8	4521566	4521766	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026058, intron 9 of 10)	intron (NM_026058, intron 9 of 10)	28261.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	5.08828267117937	4.76796619121882	4.77073896432089	5.20468334687348	4.70053725307828	4.82324139714134	5.09471033902395	5.14662476477201	-0.0751374196922052	0.828663469486479	0.934216547736585
Merged-chr8-4259338-4	chr8	4259251	4259451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183315)	promoter-TSS (NM_183315)	-77.0	NM_183315	330695.0	Mm.34210	NM_183315	ENSMUSG00000048644	Ctxn1	BC028881|Ctxn	cortexin 1	protein-coding	6.75936655053586	6.53344513140872	6.81563503353409	6.90317864471083	6.50342095650672	6.60039635801229	6.79443777826776	6.59034813136665	-0.207885297509093	0.328662587183343	0.640138323335519
Merged-chr5-105405158-3	chr5	105405060	105405260	+	691.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10615.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	3.42766324100219	2.82386643115693	2.96926375001166	3.07268082033679	3.56113803791296	3.75574281256756	3.87041195320838	3.24812842356639	1.87122088285014	0.002313753855056	0.026162142279433
Merged-chr11-43569869-4	chr11	43569763	43569963	+	938.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045530, intron 3 of 5)	intron (NM_001045530, intron 3 of 5)	31699.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	5.2908822142824	5.38852014144748	5.17874734550427	5.37030770572722	4.28652164555432	4.15457154761406	5.09242713156943	4.75957161749677	-1.37541828442495	0.00050506898712399	0.00777808425670673
Merged-chr9-41085374-3	chr9	41085282	41085482	+	897.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	-5876.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	3.71365229814914	4.21290652081664	3.71414598649661	3.59276214093676	4.30303545861517	4.24038938258298	4.05172104312815	3.45667100123667	0.604379104479554	0.24921383573596	0.560328612484111
Merged-chr2-59211912-4	chr2	59211833	59212033	+	978.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	L3|LINE|CR1	51083.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	4.70244659886424	4.46403868667579	4.7770036464219	5.18159677238831	4.63366439340075	4.62929251697973	4.47758568232749	4.58089944150627	-0.524236778224357	0.16811053683873	0.460091085512134
Merged-chr5-99406074-3	chr5	99405983	99406183	+	698.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-153156.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.07619121975975	3.25797672324157	3.07656742082511	3.08255416560012	3.04566477468246	2.98714568078392	2.93960057555039	3.39604679718749	-0.0806256663338969	0.88997606934099	0.958812873663429
Merged-chr2-34802333-4	chr2	34802275	34802475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2463.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	7.37645538616657	7.52416057413009	7.24145399547273	7.07471570563079	7.49250142133657	7.46208640134553	7.2802173861155	7.40203131105765	0.144652374930187	0.452651515676955	0.736937759721328
Merged-chr11-79210110-4	chr11	79210051	79210251	+	913.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32873.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	3.99853167313554	3.98820688650697	3.50886992296324	3.72962605720068	4.21941747717759	3.81221648891384	3.83927746245666	3.90271096439026	0.405763798570492	0.389436753283462	0.689733973524186
Merged-chr5-115327678-4	chr5	115327526	115327726	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036616, intron 1 of 4)	CpG	449.0	NR_036616	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	5.14850719017625	5.16730859289887	4.87826061014862	4.7183997603091	5.25258780716057	5.0159797016034	4.99666490853629	4.87503417789058	0.143533200585913	0.667288883823529	0.862338897157766
Merged-chr2-140671527-4	chr2	140671427	140671627	+	994.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178382)	promoter-TSS (NM_178382)	-51.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	5.58537920958715	5.45394772752234	5.4304172459903	5.59548023929247	5.0803825043397	5.32983068505477	5.31793704176972	4.96531294887741	-0.626150631901518	0.0312075330933735	0.171902259561464
Merged-chr9-71834921-4	chr9	71834808	71835008	+	634.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	61188.0	NM_001253864	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	3.80543422560582	3.56399906626237	3.43610700766316	3.47090461251968	3.30303560724942	3.6706150949861	3.83342722056232	3.65811420007253	0.167494742114961	0.742621763144689	0.89853940009025
Merged-chr2-142903055-4	chr2	142902952	142903152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131921)	promoter-TSS (NR_131921)	87.0	NR_131921	75053.0	Mm.72638	NR_131921	ENSMUSG00000086504	Kif16bos	4930511F01Rik	kinesin family member 16B, opposite strand	ncRNA	7.93043420660765	7.82019030731325	8.20919044534458	8.28774810222979	8.06317463214431	7.96402721586214	8.25409728967263	7.97598634278154	-0.0157765874467168	0.931815781476065	0.9753638256744
Merged-chr13-17977398-2	chr13	17977298	17977498	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	15953.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	3.0471690483726	3.04987214450077	3.0475370283212	3.07519594032823	3.17064477076673	3.02765755874408	3.09487572399486	3.04604882277459	0.136229861054947	0.807279194148291	0.925729780371477
Merged-chr16-33414410-4	chr16	33414286	33414486	+	976.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358569, intron 1 of 8)	B3A|SINE|B2	13941.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	4.77953083364925	4.57123378084104	4.62389541927201	5.22384076376152	4.96123218877707	4.47750670465639	4.72066467144495	4.66181598768654	-0.250841317651108	0.51679146175564	0.77846273160021
Merged-chr9-61954923-4	chr9	61954819	61955019	+	934.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028748, exon 8 of 8)	3' UTR (NM_028748, exon 8 of 8)	-8120.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	4.90685317939416	5.05468413610952	4.94279355047621	4.99332967802585	4.74946125760698	4.80855361704607	4.84842141235722	5.0708094189134	-0.217462424523561	0.497436899323028	0.767090358309685
Merged-chr1-164681810-4	chr1	164681723	164681923	+	899.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114840.0	NM_019759	56429.0	Mm.28935	NM_019759	ENSMUSG00000026574	Dpt	1810032B19Rik|5033416F05Rik|EQ-1|Eq1	dermatopontin	protein-coding	4.44044609832961	4.43695533654463	4.72190568578616	5.44449423286547	4.88773559751927	4.77219900928499	5.74845114521091	5.08428188405336	0.631834137578849	0.167460947260323	0.459121129537113
Merged-chr13-117289842-4	chr13	117289670	117289870	+	839.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69197.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	3.41699070629468	3.19364658164061	3.47429885912232	3.40044930056263	3.69581207123227	3.74917728880676	3.46076801354056	3.47240684159526	0.751114768729178	0.135042379914935	0.409098636362155
Merged-chr19-9914577-4	chr19	9914491	9914691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-15058.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	7.48069479856285	7.26404853976962	7.12780698484682	7.52222156815316	7.43081174261517	7.40881987932712	7.20655775408101	7.12280904705423	-0.0864481662038505	0.659950631803479	0.858658417042423
Merged-chr11-121769009-4	chr11	121768909	121769109	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61209.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	5.09771235847133	5.20115047312462	4.7714154774386	4.85951141473115	4.91065158898859	4.98929418522664	5.10494405979741	5.30134464093748	0.17757829648398	0.585787068918292	0.818454789999846
Merged-chr18-23805871-4	chr18	23805790	23805990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	1920.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	7.31467325817105	7.15463013805513	6.98625582883912	7.33689532720965	7.49434110492896	7.50316433431191	7.53932785990974	7.19148837213958	0.305749321110189	0.113158422555297	0.371843560272541
Merged-chr2-132007590-3	chr2	132007459	132007659	+	903.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 3 of 10)	intron (NM_175445, intron 3 of 10)	22429.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	3.5832757029619	3.72675647251351	3.63404256213681	3.27623749217048	3.4921523563811	3.53515813196699	3.34854412066614	3.29666540059827	-0.448437232548209	0.39510185117487	0.694051201006319
Merged-chr10-12871266-3	chr10	12871196	12871396	+	821.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-9561.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	3.09152711088826	3.13588755259542	3.00799257505412	2.42835787750136	4.31478210451654	3.97695741432589	4.19975679706851	4.21944845000307	4.98596962213959	2.5488048768453e-05	0.000630154158836303
Merged-chr12-84748276-4	chr12	84748171	84748371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	24841.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	6.98213990152668	6.88402797423704	7.01999946188227	7.10640324570853	6.84460907794526	7.0157515797389	6.3608113994241	6.96597598361643	-0.257759877157653	0.241743174241485	0.552255337817522
Merged-chr13-59842366-4	chr13	59842270	59842470	+	912.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-19223.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	4.29898759276973	4.07573918983676	3.71307553015249	4.08310821217144	3.76111087465624	4.38549444090648	4.70884515806493	4.56715809149385	0.827264595095849	0.0857112234319113	0.318831417437158
Merged-chr13-20125196-4	chr13	20125077	20125277	+	797.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	34670.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.81418103260347	3.57791148520355	3.71796991547536	3.77310183122958	3.64447613982166	3.67250739211731	3.65190978773914	3.5552766755099	-0.291823923867071	0.531990944065354	0.787771145203209
Merged-chr14-31414898-4	chr14	31414803	31415003	+	924.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	2774.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	4.43942956991797	4.5876743096903	4.39295161118153	5.07309155701004	4.88545290992522	5.00583018067285	4.37392809776928	4.52675649767564	0.107320628848646	0.796040497683494	0.921023514054185
Merged-chr11-59229959-4	chr11	59229855	59230055	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1688.0	NM_007476	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	4.99955207333668	5.00867942852013	5.00038624707583	5.32999195325847	5.40078242122783	4.8241591111585	5.10664660721107	4.59437051253351	-0.13581122365937	0.706776709198516	0.882219054854818
Merged-chr4-136118646-4	chr4	136118540	136118740	+	896.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25182.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	4.28195788498692	4.36345633850263	3.95857231847686	4.12472164570071	4.26533668479992	4.27920043129679	3.94252574945126	3.66416367734543	-0.313701834693379	0.491038783045705	0.762703477030731
Merged-chr10-19033859-4	chr10	19033774	19033974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-18464.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	6.92428693054152	7.08249324547743	6.95081954369383	6.73556938272731	6.82032199264604	7.00901412030928	6.71277487937872	6.40672059080317	-0.234477110447381	0.289328587668146	0.601308522016326
Merged-chr6-128766979-4	chr6	128766889	128767089	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	21652.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	4.83913441620782	4.69735096185722	5.05642100761653	4.56667171146181	5.05341604561056	5.26271380194941	5.51642168458825	5.08567750120238	0.881410335174098	0.00812869240013551	0.067941779749794
Merged-chr10-59950890-3	chr10	59950758	59950958	+	795.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029083, exon 3 of 3)	exon (NM_029083, exon 3 of 3)	912.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	4.31096852257732	3.84862154203592	4.10169609328421	3.76836276738776	3.91390704544535	3.91583621748789	4.36531860886435	4.00452047059143	0.131175489760982	0.773910140651711	0.91166330938482
Merged-chr8-10883506-3	chr8	10883420	10883620	+	939.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1066.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	3.69980809611841	3.64564417315872	4.09524382594588	4.08760344341266	3.30109179387175	3.32137188560123	3.63295028617333	3.4119552305088	-1.57463843670795	0.00298552431418947	0.0318750760801447
Merged-chr5-24389499-4	chr5	24389405	24389605	+	938.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002897, intron 5 of 13)	intron (NM_001002897, intron 5 of 13)	2638.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	4.69554474350508	5.06113298921719	4.81521332424489	4.61651919875825	5.02650079329238	4.98932195899325	4.9996278224968	4.88551718466337	0.362332352741555	0.27266915788413	0.584112859693456
Merged-chr13-56173279-4	chr13	56173152	56173352	+	790.820801	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001168615)	TTS (NM_001168615)	5633.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	4.25154852886843	4.03637639065689	4.3768143959693	4.74357918911754	4.03718371051933	3.96781533940699	3.94383643319344	4.20519446418938	-0.8894490905141	0.0446839619039785	0.215845910615576
Merged-chr11-121204401-4	chr11	121204307	121204507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001333)	promoter-TSS (NM_001001333)	-26.0	NM_001001333	238023.0	Mm.275130	NM_001001333	ENSMUSG00000039307	Hexdc	BC069960	hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing	protein-coding	6.92254588438739	6.95231977389298	6.8018728292604	6.54816214627738	7.00887186233242	6.8598238995618	6.87577843515465	6.96941044631946	0.184692036548276	0.372032670264654	0.675999117677171
Merged-chr11-88162252-4	chr11	88162145	88162345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198013, intron 1 of 10)	intron (NM_198013, intron 1 of 10)	-7320.0	NM_001172099	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	4.86655285792802	5.05316546554166	4.63951118608475	4.80490323787154	4.89684713312956	4.3862512565515	4.84394364387694	4.7553872048794	-0.216227518834264	0.542410400402746	0.793833794123973
Merged-chr7-44854699-6	chr7	44854553	44854753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290695, exon 4 of 4)	exon (NM_001290695, exon 4 of 4)	-2493.0	NM_021549	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	5.51714612433366	5.56306875252659	5.85885181673674	5.52975880320035	5.70894317279938	5.34664385727065	5.71901558150292	5.56905837249488	-0.0255279017369179	0.926155514231972	0.972815219471963
Merged-chr1-171561438-4	chr1	171561326	171561526	+	923.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018729, intron 1 of 8)	intron (NM_018729, intron 1 of 8)	2233.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	5.42400964430536	5.01595449035163	5.39899489387211	5.74473967877972	4.60690613864155	4.71868504835	4.94072514446681	4.99770897420908	-1.17962709935229	0.000642600032209572	0.00942502116065221
Merged-chr12-86824187-4	chr12	86824095	86824295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60619.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	6.70139449352203	6.54046535303594	6.55071180045876	6.66647372383152	6.36603273851863	6.55480974485628	6.41695949410908	6.60896773314659	-0.197357237932144	0.346107927560364	0.654367195490308
Merged-chr18-6244745-3	chr18	6244640	6244840	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1b|LTR|Gypsy	-3216.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	4.29323348557943	4.29051890158095	3.67940046891546	3.74269708308746	3.96701233461758	3.85914896480939	3.72421612689076	3.99728922176668	-0.367549566369914	0.44696065100035	0.732624344906251
Merged-chr12-78749472-4	chr12	78749300	78749500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019579, intron 1 of 14)	CpG	453.0	NM_019579	56217.0	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	5.31465504780614	5.78460776716812	5.79670875546178	5.24185028974149	5.66847317165166	5.55561108710229	5.4694487328127	5.60107576105292	0.0553803297303666	0.852009392391818	0.94421936565126
Merged-chr6-135299198-3	chr6	135299081	135299281	+	903.4111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11203.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	4.38863839957185	4.02678578396811	5.04542791117947	5.35014486987986	3.58583823745756	3.9394963157903	3.72868085059301	4.10093033247577	-2.39392739596731	7.38361617908533e-06	0.000210223366404446
Merged-chr6-91582471-1	chr6	91582371	91582571	+	944.3333130000001	f0_balb.idr	Intergenic	L1MC4a|LINE|L1	66436.0	NM_026309	67678.0	Mm.246693	NM_026309	ENSMUSG00000034192	Lsm3	1010001J12Rik|2610005D18Rik|6030401D18Rik|SMX4|USS2	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	3.72611384810259	3.43684824870948	3.94150609392046	4.08746444658494	2.92036944761761	3.26221433219947	3.20684786304578	3.2158848859608	-2.57448351023575	3.6440302613907e-05	0.000857732903358229
Merged-chr6-99028915-4	chr6	99028796	99028996	+	878.6375119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001197322)	promoter-TSS (NM_001197322)	-598.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	4.05722457397591	4.12345121273947	3.96119144104059	4.05780662724334	3.99579131261724	3.97712867157362	3.99352612264206	4.10100175820002	-0.0963053987943732	0.815089982426209	0.928708522466333
Merged-chr5-72161291-3	chr5	72161189	72161389	+	945.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178599, intron 3 of 4)	intron (NM_178599, intron 3 of 4)	6900.0	NM_001356611	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	4.28902934480545	3.91317032928105	4.21180158758986	4.55552111059655	3.57961301737161	3.72743271645566	3.71456685720174	3.4715909033482	-1.8917039941482	0.000125852537024242	0.00245965341374205
Merged-chr19-6418329-4	chr19	6418229	6418429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205235)	promoter-TSS (NM_001205235)	-409.0	NM_001205235	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	4.65414464780754	4.97857293047907	4.85963054339304	4.66880440071973	5.28842411207457	4.99732578170015	5.10619624911361	5.21656567554567	0.732579943626443	0.0211859841377573	0.132980349642101
Merged-chr12-85601112-4	chr12	85601008	85601208	+	989.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	1090.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	4.3882224537534	4.00490577945866	4.07528176341835	3.95695062153479	4.21763608411155	4.47744274280999	4.2004177649388	4.38605447498376	0.539904601394698	0.183681455389847	0.480761104819123
Merged-chr19-32183286-4	chr19	32183193	32183393	+	930.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	L1MC4a|LINE|L1	27720.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	4.92729989466964	4.4546544351781	5.06840864645679	4.71433799107797	4.18247738294667	4.01426690284569	3.87237257984118	4.58581729692508	-1.41365627986598	0.00133014747296438	0.0169583677195292
Merged-chr9-70678868-4	chr9	70678773	70678973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007399)	promoter-TSS (NM_007399)	-109.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	8.60859795881742	8.91492226375089	8.80143297237175	8.71502917142762	8.84646036154863	8.88722721380475	8.90602425649124	8.81984965437455	0.124833820909217	0.395814401985973	0.694805625760427
Merged-chr1-125463051-4	chr1	125462889	125463089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-27262.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	6.7110624811842	6.48800898728134	6.49446206698201	6.54176298493703	6.55552611910316	6.54652867405325	6.69226397105849	6.6188389271191	0.0640389445855787	0.755303879122621	0.903652872648086
Merged-chr12-11276722-7	chr12	11276609	11276809	+	965.2551269999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361252, intron 4 of 9)	(TG)n|Simple_repeat|Simple_repeat	10823.0	NM_025695	67241.0	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	4.25425006907186	4.12189644478213	4.11252229217562	4.26575133706811	4.43539506749169	4.33537914601633	4.14406711797822	4.49631878061981	0.403076939525088	0.300744518411063	0.612615171792683
Merged-chr6-71279594-4	chr6	71279490	71279690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145568, intron 1 of 3)	intron (NM_145568, intron 1 of 3)	7571.0	NM_145568	57896.0	Mm.250569	NM_145568	ENSMUSG00000053012	Krcc1	AA792894	lysine-rich coiled-coil 1	protein-coding	5.99623384981148	6.0152382619001	5.73816801139198	5.79895697472097	5.95834540176704	6.12861771099248	5.85609308078936	5.993011402075	0.15539957060336	0.525807092621554	0.783367294725902
Merged-chr3-133111891-3	chr3	133111811	133112011	+	758.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027927)	TTS (NM_027927)	-19872.0	NM_001356309	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	3.16434844528833	3.39973105294756	3.72722797939725	3.65710944301399	3.33932671158821	3.4112401882923	3.71048895855351	3.47426515132832	-0.073163914166316	0.892614599959123	0.959816321034536
Merged-chr6-121225127-4	chr6	121225013	121225213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017379, intron 4 of 4)	intron (NM_017379, intron 4 of 4)	14379.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	6.73255026912489	6.2826959124658	6.84544784783206	6.80425847482744	6.95222528757352	6.83522593830581	6.97261670358528	6.48840451782459	0.202348990446721	0.387731373506888	0.688595767725629
Merged-chr11-52064584-3	chr11	52064473	52064673	+	623.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	B3|SINE|B2	-34251.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	3.3477927809651	3.5385196574142	3.41034479615482	3.60685078372172	3.59324278056999	3.52539566527669	3.3981818576078	4.02279862424867	0.532247515924971	0.306712830803017	0.619092570117727
Merged-chr10-34193850-4	chr10	34193728	34193928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	13723.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	5.26348406371615	5.81703967955846	5.41753433677848	5.38637549270499	5.45206548026095	5.50326032227579	5.41883381973628	5.26076927340119	-0.131806823110155	0.653264989106437	0.854997557892684
Merged-chr2-5592630-4	chr2	5592533	5592733	+	831.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	83413.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	4.73674149045011	4.45979884444975	4.70462191038051	4.74834918870147	4.13171169662153	4.24832755944271	3.99582522764188	3.95124757222065	-1.41476861831753	0.000417036228392562	0.00665118120115487
Merged-chr9-50617202-5	chr9	50617092	50617292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028300)	promoter-TSS (NM_028300)	-129.0	NM_028300	72614.0	Mm.147232	NM_028300	ENSMUSG00000000167	Pih1d2	2700059L22Rik	PIH1 domain containing 2	protein-coding	5.91084286523801	6.00776930870081	6.23760946138084	5.83490143991308	6.01097213942178	6.13286502327179	5.94923031827834	5.93067998298007	0.0209513752088672	0.932043078595255	0.975437323713477
Merged-chr18-61110476-2	chr18	61110376	61110576	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001037859, exon 4 of 22)	exon (NM_001037859, exon 4 of 22)	4904.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	2.77541094349467	3.00820878851537	2.70519270388373	2.64385919079828	2.85234075485447	2.95188187008017	2.95598007500201	3.23245097091412	0.955587381554507	0.125560559366985	0.393452566814114
Merged-chr7-99887510-4	chr7	99887387	99887587	+	863.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164258, intron 8 of 18)	intron (NM_001164258, intron 8 of 18)	28269.0	NM_001164258	446101.0	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	3.69979240524197	4.43461472378339	4.04867887489044	3.79363824477044	4.23978754106563	4.32178496215036	4.26269782821881	4.58199072962427	0.830297070011441	0.0648855928372237	0.270926943893984
Merged-chr3-115714378-3	chr3	115714282	115714482	+	974.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007901, intron 1 of 1)	intron (NM_007901, intron 1 of 1)	673.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	4.31064959298466	4.7695139871151	4.35345877615266	4.79730962542433	3.87344522997974	3.97969043249047	4.00836373114259	3.65942038452864	-1.81823063090357	5.13138024266823e-05	0.00115694176209339
Merged-chr19-11824575-2	chr19	11824475	11824675	+	689.25	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	4449.0	NM_146936	258938.0	Mm.451671	NM_146936	ENSMUSG00000048292	Olfr1417	MOR266-2	olfactory receptor 1417	protein-coding	4.0039666075491	3.9249705116852	3.74440913833911	3.23657534448039	3.54588627647699	3.47046354165586	3.20798403072921	3.41531331533272	-1.08799245851572	0.0571373536050263	0.250494201266491
Merged-chr9-7828922-4	chr9	7828797	7828997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007465, intron 2 of 7)	RLTR24B_MM|LTR|ERV1	7909.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	5.09542083907345	5.62545593757389	4.84233580218936	4.05815653992349	5.45381945459953	5.56233728213405	5.16509913576643	4.36565435206436	0.299036320683321	0.686545540573304	0.871787672169905
Merged-chr17-50120292-4	chr17	50120215	50120415	+	904.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	70182.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	4.56900726187183	4.27366831158316	4.34295891625718	4.95964426980653	5.69183374655799	5.74512885492806	6.15426614204832	6.07121228075867	2.39745409221491	1.32357656064603e-09	8.33724389471005e-08
Merged-chr4-120872583-3	chr4	120872490	120872690	+	849.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_182929, exon 2 of 8)	5' UTR (NM_182929, exon 2 of 8)	17791.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	4.53698873645529	4.91723314425542	4.29057455116876	4.59167032923176	4.08185566327457	4.11081829705584	3.91185432045465	4.19384743086608	-1.29142809942715	0.00197195071722991	0.0231657831493163
Merged-chr4-83525413-4	chr4	83525300	83525500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355378)	promoter-TSS (NM_001355378)	-145.0	NM_001355549	320226.0	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	8.68477062959077	8.62252332236278	8.82450780871594	8.9112560900683	8.86938300960181	8.96213012142525	8.95135343136157	8.79491769466261	0.156243491926732	0.30010378440862	0.612248910735458
Merged-chr7-101450584-4	chr7	101450477	101450677	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001143849)	promoter-TSS (NM_001143849)	57.0	NM_001243758	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	4.70367320778668	5.09310442537737	5.064771349816	4.69537544362636	5.16412458846118	4.96040924749981	4.50678766632502	5.0295457121747	0.100091572135587	0.780739731830452	0.914619377418693
Merged-chr4-101254221-4	chr4	101254130	101254330	+	772.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 1 of 24)	intron (NM_146145, intron 1 of 24)	11052.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	4.00151234311097	4.10381273609845	4.05322252140662	4.56864063831825	4.1737596643137	4.01519654786538	4.13195048596927	4.36069556701106	-0.121657512166964	0.782640141730628	0.91529005173258
Merged-chr18-73541772-4	chr18	73541673	73541873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30932.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	5.64141513055516	5.70251492785792	5.59176854608091	5.58322783879424	5.44520042699923	5.30955244808	5.58895841604558	5.33123645169721	-0.348121362369764	0.197079070056191	0.498379618699314
Merged-chr14-79511770-4	chr14	79511676	79511876	+	952.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	ORR1E|LTR|ERVL-MaLR	-3898.0	NM_001286412	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	4.7217734650782	4.70253994938664	4.75901042594586	5.21161275508493	4.7115036901285	4.18991746162743	4.41376813452383	4.47596067710571	-0.883534379148837	0.0248014135508829	0.147612734481722
Merged-chr7-67431238-4	chr7	67431150	67431350	+	815.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58392.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	3.87965229207886	3.73487299922861	4.03025898987147	4.44362814885909	3.58345635650531	3.94776948446312	4.18681425606782	4.11877910454508	-0.236291228813366	0.636507402553918	0.846283673250294
Merged-chr9-104814911-4	chr9	104814814	104815014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 2 of 15)	intron (NM_028719, intron 2 of 15)	-238354.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	5.5558074264436	5.37335901030958	5.31537659200123	5.82959091106099	5.91406408646875	5.52615722206705	5.81999471512414	5.68327269160646	0.326300329062369	0.260522478447475	0.572324359311071
Merged-chr12-71139577-2	chr12	71139477	71139677	+	736.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163378, intron 1 of 29)	B2_Mm2|SINE|B2	2729.0	NM_001163378	76967.0	Mm.87290	NM_029818	ENSMUSG00000034601	2700049A03Rik	Ta3|Talpid3|mKIAA0586	RIKEN cDNA 2700049A03 gene	protein-coding	2.83627785045043	2.84507572298446	2.77206510922248	2.36300317609985	2.82108651989485	2.94695044079288	3.00024379751954	2.83517654180235	0.876584380143567	0.196208328242601	0.497236651745317
Merged-chr16-57483065-4	chr16	57482998	57483198	+	983.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-66144.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	5.17302672724496	5.09140904073012	5.11285099224439	4.66305151089229	5.01457175034856	5.01007990039659	4.88623448134832	5.01190336707117	-0.044385832879578	0.894155986221024	0.960481560907683
Merged-chr3-96501995-2	chr3	96501895	96502095	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23190.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	3.34485640383504	3.59846378064822	3.74587186108446	3.43920065760326	3.67736100929488	3.86572581552935	3.72983836304482	3.74362965301348	0.679603626002289	0.154287290043276	0.439456383272923
Merged-chr15-96698165-1	chr15	96698065	96698265	+	685.0	f0_c57.idr	intron (NM_175121, intron 3 of 15)	intron (NM_175121, intron 3 of 15)	1563.0	NM_001355633	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	3.53072836099191	3.53330390430136	3.16093023210352	3.11581180235336	3.81230996012569	3.53490665341037	3.51683162173062	3.68107231365401	1.01596725265524	0.0534412295847839	0.241271932044611
Merged-chr8-72320927-4	chr8	72320838	72321038	+	954.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008452, exon 3 of 3)	3' UTR (NM_008452, exon 3 of 3)	1876.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	4.55788247291652	4.21126695209656	4.47932355287123	4.46315200878887	3.98924812838222	4.38532281059802	4.57452181464311	4.76704097584609	0.0452498841013148	0.913185994173538	0.967444087089441
Merged-chr5-137585128-2	chr5	137585028	137585228	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152864, intron 12 of 12)	intron (NR_152864, intron 12 of 12)	10593.0	NR_152864	50765.0	Mm.21757	NM_015799	ENSMUSG00000029716	Tfr2	Trfr2	transferrin receptor 2	protein-coding	3.19810480524184	2.97499991812723	2.97036404260308	2.78746634949517	2.67721403766778	2.94869045801845	3.01965641726181	3.19663508026279	-0.0604858985398823	0.923784898270084	0.971863340184091
Merged-chr15-25392632-4	chr15	25392526	25392726	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	L1MC1|LINE|L1	21138.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	5.24011176959815	5.20279696036456	5.29916704159029	4.88048702914638	5.10604080605887	4.87401855107002	5.0240680629148	5.40410495222875	-0.0592334795895072	0.855866761361243	0.945782466107742
Merged-chr7-111024412-4	chr7	111024309	111024509	+	866.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4542.0	NM_009431	22083.0	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	4.01205982543383	3.97958546683943	3.85831480719558	3.9510072446633	4.33589294546314	3.92287118909587	4.08807364645766	4.14782528487083	0.503113260757121	0.229956205221551	0.539096658041788
Merged-chr11-78697535-4	chr11	78697433	78697633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008702)	promoter-TSS (NM_008702)	-108.0	NM_008702	18099.0	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	8.4179581622119	8.42870247024153	7.96421514473725	8.04626466811292	8.1907928821542	8.12754148014272	8.00860296969106	7.95173539685368	-0.195638801997548	0.287942149924039	0.599908024252411
Merged-chr4-118136237-4	chr4	118136142	118136342	+	935.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001161823)	TTS (NM_001161823)	-1296.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	4.36439368468441	4.39884981535503	4.0751551814395	4.37089685013636	4.41628139046492	4.44895589522	4.4678936325602	4.48583276124025	0.321454695470959	0.391262061923282	0.691040061984853
Merged-chr15-12322582-2	chr15	12322482	12322682	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025673, intron 1 of 3)	intron (NM_025673, intron 1 of 3)	1086.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	3.09667395439677	3.20492908903128	3.27418111485794	3.07056898501874	3.38318177839112	3.20620029199176	3.20582355113548	3.27240589445935	0.442958378190285	0.409658872808186	0.70522406839492
Merged-chr11-119925410-4	chr11	119925316	119925516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 2)	intron (NR_039557, intron 2 of 2)	11606.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	7.39446920854231	7.47682266979268	7.46921193353305	7.50946379114135	6.74859252361523	6.44548711160514	7.18734172823213	7.12856321897594	-0.755445392670265	0.000581571545110739	0.0087172430103872
Merged-chr2-120296316-4	chr2	120296171	120296371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7202.0	NM_001024137	78390.0	Mm.330507	NM_001024137	ENSMUSG00000070719	Pla2g4d	2610311B01Rik|Pla2delta|cPLA2delta	phospholipase A2, group IVD	protein-coding	6.04100810905199	5.79682377331828	6.08529999208431	6.51058076178284	6.08530068576095	5.92653520777162	6.56689113580215	6.33050274882109	0.146789943396663	0.604940826066268	0.828648905155032
Merged-chr9-83610080-4	chr9	83609956	83610156	+	870.0458369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61718.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	4.2762972588246	4.40005194914683	4.5654480102662	4.25364418022657	4.41739424780203	4.25547402366257	4.42962871824816	4.44718188155648	0.0520456610882013	0.890359842289981	0.958997364311038
Merged-chr11-121082430-4	chr11	121082321	121082521	+	941.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1282.0	NM_145373	209588.0	Mm.69553	NM_145373	ENSMUSG00000025165	Sectm1a	BC010462	secreted and transmembrane 1A	protein-coding	4.66090535355977	4.12735727328497	4.25257791542237	4.60976604434149	4.53658717861783	4.16959399509817	4.4121302636881	4.58673461397981	-0.000151345536414696	0.999701561821435	0.999831138264464
Merged-chr13-34088392-3	chr13	34088278	34088478	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046184, intron 4 of 4)	intron (NR_046184, intron 4 of 4)	-10370.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	3.74681280851235	3.80394253899271	3.3906758811471	3.18637707014361	3.46579439282727	3.17172481079366	3.2566555808992	3.55380985048013	-0.601583000394688	0.293667395147932	0.606128617967717
Merged-chr7-120635211-4	chr7	120635094	120635294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025899)	promoter-TSS (NM_025899)	5.0	NM_025899	67003.0	Mm.334206	NM_025899	ENSMUSG00000030884	Uqcrc2	1500004O06Rik	ubiquinol cytochrome c reductase core protein 2	protein-coding	6.94154615136456	6.87359382204904	6.74794033665328	6.81635590249851	7.04722677470843	6.83197603307504	7.25311799136343	6.93785046459697	0.257617131590126	0.196263914391061	0.497253962689623
Merged-chr15-88828857-4	chr15	88828746	88828946	+	959.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9200.0	NM_029720	76737.0	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	4.84708983852539	4.59387815427201	4.43195699252355	4.16702079341234	4.11901176499088	4.3363219200186	4.08959950356522	4.20555040397046	-0.802577020545324	0.0562823361184146	0.248413779489107
Merged-chr8-105708211-4	chr8	105708114	105708314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198299)	promoter-TSS (NM_198299)	-46.0	NM_198299	102124.0	Mm.276087	NM_198299	ENSMUSG00000013155	Enkd1	AI606951|E130303B06Rik	enkurin domain containing 1	protein-coding	5.09771736810914	5.10127160344144	4.82984372560195	5.01345678814421	5.34018827304832	5.7298881131745	5.45686587089903	5.28781541913382	0.806347879216082	0.0073324074390307	0.0629721801523608
Merged-chr15-65872738-4	chr15	65872627	65872827	+	904.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356582, exon 23 of 23)	3' UTR (NM_001356582, exon 23 of 23)	39527.0	NM_001347038	18256.0	Mm.41776	NM_010953	ENSMUSG00000015001	Oc90	Ocn-95|PLA2L|Pla2ll|oc95	otoconin 90	protein-coding	5.090645855752	4.4680254340444	4.78225206431459	4.75703664651567	4.28819810236242	4.34796272178818	4.48856152217273	4.77901009313501	-0.661952055403556	0.0864202151170273	0.320614223486651
Merged-chr19-60940136-4	chr19	60940040	60940240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	50391.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	6.94535232715167	6.75071704087003	7.22170553580355	7.12908030997255	6.88759567217924	6.71885600534155	7.07911094472809	6.82027091995843	-0.198547945919351	0.347218614385646	0.65535995064671
Merged-chr5-112326275-4	chr5	112326165	112326365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018783)	promoter-TSS (NM_018783)	-104.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	7.51944397701853	7.48009023660702	7.4094358155933	7.17331106193931	7.44167415531104	7.47502910469188	7.40134739206516	7.02174153916143	-0.0589017066679083	0.767256487606076	0.908989684325729
Merged-chr2-167839435-4	chr2	167839337	167839537	+	924.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92890.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	4.00356437784816	4.15767002176925	4.64074241732597	4.17037691350801	4.04966695524549	4.38102548956447	4.36212995785989	4.37960721825447	0.0839378477569169	0.841739443856799	0.939933355416016
Merged-chr18-38436500-3	chr18	38436397	38436597	+	758.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	L1M4|LINE|L1	17590.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	3.44443058543079	3.52652816763161	3.89576284802291	3.84142295530684	3.74914718504847	3.36348413658055	3.54601600489266	3.44315198428518	-0.4872054321469	0.350468165671824	0.658055137870761
Merged-chr8-117339589-4	chr8	117339461	117339661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-9609.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	6.67134285657035	6.84517768654788	6.86525078222433	6.74050552547406	7.31309425896513	7.24407799639194	6.96032595353354	6.87404571454715	0.467426907780295	0.0229667994912199	0.140246187355417
Merged-chr7-4925123-4	chr7	4925029	4925229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173008)	promoter-TSS (NM_173008)	-715.0	NM_173008	269855.0	Mm.44190	NM_173008	ENSMUSG00000035279	Ssc5d	A430110N23Rik|S5D-SRCRB	scavenger receptor cysteine rich family, 5 domains	protein-coding	5.33996724105157	5.17667852387224	5.07116239843375	5.06365569125023	5.68590693607693	5.78588585764527	5.53527888304646	5.55960287757845	0.860827794736855	0.00191284926035614	0.0225815306286574
Merged-chr10-53285364-2	chr10	53285264	53285464	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204983, intron 10 of 12)	intron (NM_001204983, intron 10 of 12)	5094.0	NR_038015	100502820.0	Mm.55827	NR_038015	ENSMUSG00000112709	Gm19395	-	predicted gene, 19395	ncRNA	2.93201749819744	2.717670219895	2.45612569447607	2.70452827303028	2.57322237058057	2.85711991254325	2.80240091573308	3.14038417575041	0.660895449886529	0.340152707015055	0.649212461324196
Merged-chr7-110190263-4	chr7	110190157	110190357	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31446.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	5.93411843934393	6.37405578874814	5.63692923417185	5.52881223563575	6.0933091838389	5.99530331413844	5.90478828838735	5.63296036629963	0.0252499867219164	0.933758284601734	0.976129648653029
Merged-chr9-86464734-4	chr9	86464647	86464847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027394, exon 1 of 10)	exon (NM_027394, exon 1 of 10)	169.0	NM_027394	70348.0	Mm.53469	NM_027394	ENSMUSG00000032415	Ube2cbp	2610018I03Rik|Ube3d	ubiquitin-conjugating enzyme E2C binding protein	protein-coding	7.18116962202119	7.27602207387002	7.91768514111496	7.37025271466723	7.08837001981008	7.37128359275707	7.1348574301881	7.10639039150375	-0.389640433577742	0.0813415117563379	0.309417833291006
Merged-chr7-122127962-3	chr7	122127829	122128029	+	970.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001289842, exon 4 of 12)	exon (NM_001289842, exon 4 of 12)	5017.0	NM_001289844	233826.0	Mm.38348	NM_172744	ENSMUSG00000044702	Palb2	BC066140	partner and localizer of BRCA2	protein-coding	3.96970350992729	3.57205471981857	3.50363002232172	4.31950941846115	4.18557617520999	4.04331345011148	4.43252245245037	3.75491558994829	0.5995627334557	0.268349701018189	0.580107684368438
Merged-chr3-136793723-1	chr3	136793623	136793823	+	587.0	f0_balb.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	123657.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	3.46682680834831	3.23967993780015	3.61249421808609	3.28040362796439	3.29601060955428	3.15710021036557	3.10601106781594	3.46529350216251	-0.490781924569223	0.375282255928847	0.678284893980992
Merged-chr8-120112797-4	chr8	120112688	120112888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-1364.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	8.28922441130064	8.18482709263126	8.28497175576262	8.46082106026187	8.08811174163878	8.03939341165242	8.30616378523671	8.34507543763499	-0.145071979332755	0.383773480179876	0.685537494559776
Merged-chr1-180256335-4	chr1	180256237	180256437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128605)	promoter-TSS (NM_001128605)	-37.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	7.76082606365027	7.60711370993541	7.3730310612881	7.68160161611854	7.79633279622426	7.56143269245691	8.03803215593739	7.74905650538012	0.238945565015416	0.203782222371521	0.50681393452769
Merged-chr5-113645799-4	chr5	113645657	113645857	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	-2154.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	4.46337476996641	4.19989036983368	4.46408306824435	4.67901985876384	4.4093867136884	4.4184560649359	4.17725682664133	4.4201384862145	-0.267265305572828	0.49317464502749	0.764070218714749
Merged-chr1-165643896-3	chr1	165643801	165644001	+	765.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9360.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	3.81524088097375	3.83826321054703	4.00393024994734	4.1369403364518	3.70482272357824	3.82888689913538	3.39219690756968	3.81358294790379	-0.789472956999371	0.100543033155084	0.348098280896235
Merged-chr4-56121844-4	chr4	56121696	56121896	+	947.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-589321.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.4756147894454	4.70231450172163	4.69392692524147	4.5047605770762	4.15073031927676	4.18497684936253	4.19532238642883	3.94324273107229	-1.1441152760059	0.00388368426320741	0.0391719940726712
Merged-chr19-16139876-4	chr19	16139759	16139959	+	931.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	7028.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	4.27377671805248	4.5639876382463	4.36141912632785	4.16111759956007	4.43436550346433	4.35547913071757	4.29929594675754	3.96975390163792	-0.1422593189227	0.727505204507009	0.891505430861744
Merged-chr14-70443343-4	chr14	70443234	70443434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164082)	promoter-TSS (NM_001164082)	-107.0	NM_001164082	67065.0	Mm.20420	NM_025945	ENSMUSG00000000776	Polr3d	2810426M17Rik|44kDa|AI326118|AW489084|BN51T|RPC4|TSBN51	polymerase (RNA) III (DNA directed) polypeptide D	protein-coding	6.5300814527658	6.7120087848641	7.09622912682388	6.57038240588168	6.16329004634294	6.60484281776012	6.26225897359736	6.79456136579844	-0.386663810645286	0.130839274658204	0.402653773280836
Merged-chr12-112618126-4	chr12	112618037	112618237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1910.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	7.07099573534559	7.66723583367474	6.96953603741691	6.93442950808753	7.55202807157354	7.29785893484402	7.2190919306957	6.95117316903486	0.111479111372787	0.649382640127617	0.85269354452399
Merged-chr1-92215435-3	chr1	92215336	92215536	+	668.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35095.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	3.23414848976663	3.12435781103959	3.49520445509488	3.23333802960888	3.31969618916504	3.08811440585242	3.2225638998312	3.17379698065483	-0.246245418098253	0.655934507368309	0.856391692651398
Merged-chr7-119879381-4	chr7	119879275	119879475	+	952.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	16083.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	4.70562068303369	5.30939541033434	5.32785159307512	4.77527670980375	5.21556804636784	5.3253063766405	5.21686149316292	4.70336633864675	0.158531459276243	0.66090113198533	0.859156987134891
Merged-chr13-45390791-4	chr13	45390628	45390828	+	995.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153789, intron 1 of 6)	intron (NM_153789, intron 1 of 6)	986.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	5.35849958685409	6.15388313105389	4.92833443955652	5.17521970051595	5.73651567307766	5.73198668115114	5.5027971497884	4.96681979873168	0.0466420572890092	0.905935017949496	0.965076981047146
Merged-chr6-137747669-4	chr6	137747538	137747738	+	901.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011499, intron 7 of 9)	intron (NM_011499, intron 7 of 9)	-6939.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	3.57303476343546	3.29521321173716	3.35229682734115	3.45209184548053	3.56467010531033	3.52520482412548	3.50757405197994	3.51971941537307	0.359575495950274	0.466467110022549	0.746420287776482
Merged-chr12-73723234-4	chr12	73723129	73723329	+	973.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 10 of 13)	ORR1D1|LTR|ERVL-MaLR	138433.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	4.83941053371337	5.07343814377597	5.01239571600178	4.47036083539021	4.88672961488271	4.93921702837993	4.92225664336895	4.76111528133613	0.053578576790014	0.879583038036015	0.95491185809843
Merged-chr13-5779052-4	chr13	5778975	5779175	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79017.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	4.44763928853643	4.29311140192492	4.36721163745926	4.33009797026319	4.4957862379395	4.36143139585488	4.16974782133317	4.03208232525129	-0.169185808663898	0.669384418759378	0.863479905771059
Merged-chr7-25731528-3	chr7	25731428	25731628	+	830.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144922, intron 10 of 14)	intron (NM_144922, intron 10 of 14)	-12475.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	4.51945864436348	4.61099172309534	4.66918875481133	4.97175569744841	4.2154489414268	4.05531946043161	4.19072370699216	4.20599487939418	-1.29486291416566	0.00106313716120295	0.0141365664108472
Merged-chr3-57673729-4	chr3	57673585	57673785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033349, intron 2 of 3)	intron (NM_001033349, intron 2 of 3)	18852.0	NM_001033349	242037.0	Mm.291091	NM_001033349	ENSMUSG00000074591	Ankub1	Gm410	ankrin repeat and ubiquitin domain containing 1	protein-coding	6.09149948493517	5.61388307827246	6.4796072512695	6.53428104229623	6.11182641999157	5.8340843019693	5.88568688534645	6.04632557447965	-0.402719547187582	0.169208479458799	0.46170705970244
Merged-chr16-75887010-1	chr16	75886910	75887110	+	1000.0	f0_c57.idr	intron (NM_023380, intron 2 of 7)	intron (NM_023380, intron 2 of 7)	22256.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	4.43297589306604	4.82125892525299	4.24108842241832	4.71449633116122	4.83805767539837	4.8111641949531	4.45750780721746	4.23863553541998	0.0735315573869417	0.856129180486679	0.945844091213898
Merged-chr19-47855626-4	chr19	47855526	47855726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010362, intron 2 of 5)	intron (NM_010362, intron 2 of 5)	653.0	NM_010362	14873.0	Mm.378931	NM_010362	ENSMUSG00000025068	Gsto1	AA407097|AI194287|AU018802|Gsto-1|Gstx|Spg-r|p28	glutathione S-transferase omega 1	protein-coding	6.7648785907643	6.96420818703116	6.76606791768634	7.10192702249724	6.59603146895523	6.65673831905688	6.64342245212333	6.5096493244151	-0.454698667198752	0.0286916278980078	0.162676547885319
Merged-chr11-103159192-4	chr11	103159085	103159285	+	992.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11953.0	NM_001077698	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	5.09611665528469	5.0360509263027	4.67176206855333	4.88259456250881	5.33054972271912	5.45188142847217	5.1963215533973	5.06015164934366	0.642388709351065	0.040577887492492	0.203608160496785
Merged-chr4-40777334-7	chr4	40777242	40777442	+	896.904785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19457.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	3.82981154899555	4.00009772201796	3.54684740553436	3.6105684965125	4.08099055002637	4.09790237644483	3.76305729699041	3.77618762508753	0.53610006274812	0.251787154789336	0.563040416191876
Merged-chr2-75725097-4	chr2	75725011	75725211	+	975.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20448.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	4.70312005417572	4.96915267744916	5.0495839828359	5.47008200717526	5.35425583276091	4.88363014312027	5.02508275500482	5.04615874673009	-0.00464846445985478	0.989667992172382	0.995854307446602
Merged-chr2-153109062-4	chr2	153108956	153109156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	588.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	5.94935737656354	6.1457627699089	5.41969868073594	5.81400981664703	6.34351909383988	6.05711524000461	6.47949250107289	6.13685890109657	0.633465644927926	0.0184164287166239	0.121194317174071
Merged-chr14-51165506-4	chr14	51165455	51165655	+	775.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3295.0	NM_019398	54159.0	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	3.3732268872325	3.31538430985088	3.37363968392616	3.44245765695199	3.88079419012498	3.4248617458097	3.67749226984603	3.54162281713893	0.878229116063308	0.0812651405017586	0.309397582949155
Merged-chr5-121843506-6	chr5	121843436	121843636	+	938.205566	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-5461.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	4.02504245647667	4.02191365877907	3.92821764729712	4.00499748769607	3.83430375194924	4.1489564297024	3.75263174015219	4.15643569070144	-0.0474457621929584	0.913029379779958	0.967378955393832
Merged-chr2-90565751-2	chr2	90565621	90565821	+	751.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	MIRb|SINE|MIR	14926.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.31784190121548	3.18701758595397	3.02671250684276	2.71086264666446	3.18593777122236	3.13835634566853	3.07928183445511	3.36741179785251	0.485384574959039	0.426432352140897	0.717905118094534
Merged-chr18-53153372-1	chr18	53153272	53153472	+	743.0	f0_c57.idr	Intergenic	Lx7|LINE|L1	-22920.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	3.18651650821977	3.13161628734019	2.82339084948712	2.60922129352481	3.60325691944211	3.4861158302929	3.69114217600293	3.52276732339402	2.46617765449322	7.11630128832212e-05	0.00152386043742924
Merged-chr4-105643207-3	chr4	105643091	105643291	+	971.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	485844.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.63008491436674	4.45744338131845	5.43407729552622	5.84346414129291	3.79519665822552	4.21371635635832	4.33684220641051	4.24921827743172	-2.31842445071298	2.53263627743438e-06	8.10933502435907e-05
Merged-chr17-29094628-6	chr17	29094532	29094732	+	993.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007669, intron 1 of 2)	CpG	863.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	5.78193870660549	5.42695849894709	5.4237592094693	5.30928832935414	5.19072592327536	5.28829954427675	4.85595765973892	5.36324116509063	-0.540699866590586	0.0828404501067734	0.312678990250823
Merged-chr4-108348666-4	chr4	108348564	108348764	+	946.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	20512.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	4.69263410141427	4.45415600387442	4.65473479438917	5.18451757424804	4.91717947674097	4.52548655854342	4.22524820362512	4.65169550646068	-0.378506301243273	0.3619957284609	0.667306442775501
Merged-chr14-62332124-4	chr14	62332077	62332277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026001, intron 1 of 10)	CpG	109.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	5.67743907335731	5.88602827096686	6.02693009762533	5.78102668466882	5.80176963273659	6.05062198004816	5.84624973470439	5.75215736324071	0.0300208759070591	0.905299561883559	0.964857060871205
Merged-chr2-4509963-4	chr2	4509863	4510063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-49791.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	5.43646814715542	5.36132250278057	5.21799331533579	5.71682102824084	5.48259836994571	5.49269295752762	5.49326013028967	5.66909054255052	0.114144835100773	0.693418018557017	0.875305395019895
Merged-chr7-114164500-4	chr7	114164453	114164653	+	979.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-46772.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	4.5149614873578	4.24594480062855	4.55829849566797	4.62116193017366	4.80923984756297	4.8124059468945	5.0152402040427	4.51281032059022	0.639845459159091	0.0791610112274092	0.304457860169436
Merged-chr12-44181443-3	chr12	44181331	44181531	+	967.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28637.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	3.08141809132808	3.05850843792444	3.15178054394579	3.14413886813543	3.76653403776968	3.51771025568066	3.72937484617624	3.60797532806676	1.9059002539581	0.000298463926024453	0.00505457144670344
Merged-chr8-88209952-4	chr8	88209875	88210075	+	797.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164499, intron 2 of 11)	(TG)n|Simple_repeat|Simple_repeat	10762.0	NM_001164498	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	3.90474920246112	3.52549729860987	3.90534754986282	4.12926234692744	3.68379684121174	3.46163813155361	3.58623197905368	3.70774942910928	-0.836321485856205	0.0943373572044522	0.336061195558566
Merged-chr10-61267582-4	chr10	61267471	61267671	+	960.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081127, intron 2 of 21)	intron (NM_001081127, intron 2 of 21)	5867.0	NM_001081127	237360.0	Mm.333252	NM_001081127	ENSMUSG00000059901	Adamts14	Adamts-14|TS14	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	protein-coding	4.85040658012282	4.56849165160428	4.81382451448419	5.21722320725523	4.71095996026055	4.65036506942199	5.17647726810675	5.08242175389499	0.0405447857310271	0.913255744014367	0.967503581044214
Merged-chr15-86212388-4	chr15	86212310	86212510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2049.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	7.6191408642342	7.45010470633152	8.04473187378549	7.87815195624179	7.68212183312693	7.69670447736698	7.90805434928395	8.08274465937207	0.105279696287926	0.604337793774468	0.828462598614024
Merged-chr14-69732673-4	chr14	69732554	69732754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134078)	promoter-TSS (NM_134078)	-84.0	NM_134078	105513.0	Mm.159637	NM_134078	ENSMUSG00000034190	Chmp7	4930596K11Rik|6330407G04Rik|AI450338|AW550775	charged multivesicular body protein 7	protein-coding	7.80789330020773	7.91629609200623	7.61809300679302	7.61811310329378	7.96410033090455	8.21164855036392	8.00216760684255	7.73259456542664	0.316706800660206	0.0836424887909881	0.314439036107201
Merged-chr12-69331359-4	chr12	69331253	69331453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025441, intron 17 of 32)	B3|SINE|B2	25823.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	5.88891392504025	5.86452838991919	6.06066784750582	6.15975823738154	5.70823763362486	5.7874428544213	5.76567606843005	5.86271186020051	-0.374385270153861	0.132599737093284	0.405565344042749
Merged-chr1-154041076-2	chr1	154040974	154041174	+	740.166626	f0_balb.idr|f0_c57.idr	Intergenic	MLTR14|LTR|ERV1	141145.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	3.78669663875346	3.96354462422941	3.84220112935504	3.94692287879889	4.07728494309929	4.06827272329199	4.274228167576	4.13080273544615	0.65668970206846	0.115960249917519	0.376746786372172
Merged-chr6-146888449-4	chr6	146888357	146888557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170433)	promoter-TSS (NM_001170433)	-37.0	NM_001355728	67533.0	Mm.103382	NM_026221	ENSMUSG00000016487	Ppfibp1	4632409B19Rik|AW214454|AW261454	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding	7.82267931085931	7.55635767926093	7.7625901643361	7.98135342682307	7.64095517720947	7.49137801639359	8.19062017479739	7.65066075760963	-0.0281110625768332	0.894702684205076	0.960674033564634
Merged-chr16-3885638-4	chr16	3885481	3885681	+	868.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290689, intron 1 of 5)	intron (NM_001290689, intron 1 of 5)	962.0	NM_001290689	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	4.32993840400802	3.99809741697869	3.72316080915864	4.27744268837723	4.07389621444724	3.78095057206252	3.82235421427617	4.03715052844943	-0.457621204711056	0.322391689383695	0.633942634212845
Merged-chr14-64639763-4	chr14	64639658	64639858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12773.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	6.32088201780193	6.32324489589337	6.51407765381353	6.90990008387382	6.31629219058801	6.33919070836294	6.46454701808615	6.33619030884126	-0.290809755663227	0.235711621309757	0.545663379778285
Merged-chr1-60098283-4	chr1	60098196	60098396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199061)	promoter-TSS (NM_001199061)	49.0	NM_001285463	241066.0	Mm.276441	NM_139150	ENSMUSG00000026017	Carf	Als2cr8|ECBRC-FC1|ECBRC-FC2	calcium response factor	protein-coding	6.68641630513407	6.93225899233279	6.73217886065136	6.39367990706864	6.6558969675251	6.83359660508237	6.69789417428098	6.94144937804551	0.13471113555345	0.546550983812785	0.796426402355639
Merged-chr2-144550813-3	chr2	144550711	144550911	+	961.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015754)	promoter-TSS (NM_015754)	48.0	NM_015754	26450.0	Mm.440564	NM_015754	ENSMUSG00000027428	Rbbp9	Bog	retinoblastoma binding protein 9, serine hydrolase	protein-coding	3.82822479060377	4.24191967938245	4.50897907599608	4.41587464665961	3.99577068091657	4.06591820985997	4.2999968677916	3.99406340471524	-0.473355230473311	0.281445514606212	0.593540225546197
Merged-chr8-95915087-3	chr8	95915026	95915226	+	747.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26761.0	NM_010325	14719.0	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	3.4314850267993	3.10817308069231	3.26988922987908	3.14120509836365	3.48224232505189	3.19354424452191	3.31347544255384	3.32455463854578	0.381011806185838	0.479204902735376	0.75496515652504
Merged-chr6-34927322-4	chr6	34927238	34927438	+	840.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009292, intron 1 of 8)	intron (NM_009292, intron 1 of 8)	6390.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	4.29118645250328	4.18115237070112	4.02056746285105	4.31344833225143	3.85935356698561	4.03794039326156	4.05272977433975	4.24779331513049	-0.426268185213794	0.309211419417322	0.621610405363504
Merged-chr17-71195239-4	chr17	71195142	71195342	+	947.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	-9412.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	4.45900781111777	4.96291755622427	4.45968683188395	4.44608316233955	4.97828437670783	4.68187316070085	4.68912061018444	4.88548081107594	0.470435935140749	0.197849463497256	0.499157372922807
Merged-chr8-119817706-4	chr8	119817620	119817820	+	941.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 3 of 3)	(ACCTG)n|Simple_repeat|Simple_repeat	22859.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	4.67899486438415	4.40276039855991	4.87276676237492	5.36809326742086	4.94974806196338	4.77202147721787	5.04619552391902	4.75733427523183	-0.0301030334120749	0.939529555210846	0.978187610952123
Merged-chr5-147896035-4	chr5	147895947	147896147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1232.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	6.62728920855859	6.37571003011106	6.98072243215898	7.09948989108971	6.93182113499319	6.86905248977933	6.99341551160798	6.89986720454783	0.153662460685087	0.511494047037397	0.775455479746004
Merged-chr4-134124235-7	chr4	134124113	134124313	+	864.914307	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045571, intron 10 of 13)	intron (NR_045571, intron 10 of 13)	4540.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	3.55394205023645	3.5556622749476	3.38356335579387	3.39167535816412	3.45469865222222	3.49828524484587	3.43015800845989	3.87909097380407	0.349437931697663	0.488320038218037	0.76118893988362
Merged-chr13-112361822-4	chr13	112361712	112361912	+	986.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 8 of 11)	L1MD3|LINE|L1	73294.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	5.7702756717457	5.41184583309788	5.52653990962321	5.64041461456001	5.50038200781487	5.25883164483322	5.7851701680201	5.07466787302403	-0.270469878023088	0.37303066437809	0.67671796075698
Merged-chr6-136499347-4	chr6	136499219	136499419	+	815.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-19532.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	2.74102180163442	2.6702299081328	2.74128428852896	2.45543496610523	3.74328051095439	3.60139257746287	3.20378949723259	3.27219994526369	3.88639877546525	7.54044924370375e-09	4.09398655009603e-07
Merged-chr1-139467918-4	chr1	139467820	139468020	+	945.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009791, exon 8 of 28)	exon (NM_009791, exon 8 of 28)	13147.0	NM_009791	12316.0	Mm.168523	NM_009791	ENSMUSG00000033952	Aspm	Calmbp1|D330028K02Rik|MCPH5|Sha1	abnormal spindle microtubule assembly	protein-coding	5.10671576696378	4.8099183274345	5.72928469911567	5.89361623758868	4.9282914578898	5.38423538070801	5.33293124913974	4.83439433631789	-0.596213489650332	0.126046740104812	0.394437743511843
Merged-chr17-24752965-3	chr17	24752884	24753084	+	628.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357340)	promoter-TSS (NM_001357340)	-4.0	NM_001357342	328779.0	Mm.328848	NM_001012402	ENSMUSG00000039628	Hs3st6	3-OST-6	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding	3.53856126579381	3.20060953591781	3.24804924600082	3.13015824806486	3.35881792721499	3.75940941466687	3.71495548234417	3.42833484948771	1.00046947513359	0.0591048852577414	0.256166755633001
Merged-chr4-3975208-4	chr4	3975108	3975308	+	888.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35784.0	NR_104356	66433.0	Mm.27406	NM_181391	ENSMUSG00000042198	Chchd7	1810049H20Rik	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding	3.85361444029818	3.96321856497924	3.56044201985894	4.07450239337916	3.92084125058992	3.86399522736433	4.27468713333498	4.09139284526869	0.420329574984528	0.365682091856317	0.670381065141288
Merged-chr8-75101061-2	chr8	75100961	75101161	+	726.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010442)	TTS (NM_010442)	7443.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	3.08371997164667	3.51893434552002	3.21491350870923	2.77382148585779	3.63987215191337	3.50679152451187	3.26334963349282	3.33227690322421	0.971524114701402	0.108454726375641	0.363483160530424
Merged-chr7-118484207-4	chr7	118484108	118484308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033380)	TTS (NM_001033380)	7767.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	7.23712007528606	7.84260151485521	7.44692158281573	7.73985229324639	7.43778555094747	7.50253767255428	7.56397257718582	7.29928416188417	-0.192018124104934	0.34432410974961	0.652850105427865
Merged-chr3-20035197-4	chr3	20035090	20035290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001146324, exon 1 of 9)	exon (NM_001146324, exon 1 of 9)	120.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	7.15571033504919	7.37629359000965	8.14486222910367	7.52132991444384	6.66470341085045	7.11990207546288	6.72862362070929	7.33602383635245	-0.830851529583296	0.00205350392406242	0.0238522121101239
Merged-chr1-140257908-4	chr1	140257802	140258002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081027, intron 1 of 27)	intron (NM_001081027, intron 1 of 27)	11645.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	6.79784736664898	6.4517484768156	6.55001471036083	7.20215711403537	6.09866470631204	6.33307294906274	6.36222168639068	6.59299127103189	-0.650422313159085	0.0131228645086559	0.095606179412653
Merged-chr2-94405051-4	chr2	94404958	94405158	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183106, intron 1 of 24)	intron (NM_183106, intron 1 of 24)	1631.0	NM_183106	74569.0	Mm.248504	NM_183106	ENSMUSG00000027194	Ttc17	9130020K17Rik|D2Bwg1005e	tetratricopeptide repeat domain 17	protein-coding	4.99541327002279	5.24219286920063	4.96118557530243	5.03922757216975	4.89099238308219	4.90621655127835	5.07102864185225	5.09247864189764	-0.147526031472356	0.636362198017674	0.846156897735892
Merged-chr8-108317702-4	chr8	108317614	108317814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD1|LINE|L1	266963.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	6.54748299928161	6.77471274947063	6.23452738332303	6.34215075488383	6.76034837888578	6.77285456717172	6.66824628436811	6.65348737754562	0.330414724615279	0.137782525412841	0.412866143654146
Merged-chr17-6746190-4	chr17	6746101	6746301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 7 of 12)	intron (NM_009510, intron 7 of 12)	36579.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	7.64456760266533	7.48076936894717	7.71689673324723	7.79184214564083	7.17015721421762	7.13882422579258	7.40660461401247	7.02346820600899	-0.63571980565783	0.00072233666260105	0.0103875584664665
Merged-chr8-9977759-4	chr8	9977661	9977861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026868)	promoter-TSS (NM_026868)	44.0	NM_026868	68904.0	Mm.142570	NM_026868	ENSMUSG00000040396	Abhd13	1110065L07Rik|AI463703|AI788994	abhydrolase domain containing 13	protein-coding	7.53133856953132	7.42093512095701	7.65392897147655	7.43186492653661	7.49378983616547	7.79752080696835	7.55744870811527	7.51830631378468	0.113600124185493	0.523714486853272	0.782614071626827
Merged-chr18-49553851-3	chr18	49553755	49553955	+	753.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30566.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	3.86785680725054	3.80804842231973	4.09917989706629	4.26549064211898	3.72341399782545	3.93697109964182	3.7484050732504	3.70504254962473	-0.734693554857566	0.111947936616257	0.369743500552577
Merged-chr10-78487862-4	chr10	78487759	78487959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22911.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	5.5872215317698	5.15100888114289	5.07244452434938	5.34072940828907	5.58510912714336	5.68393436654087	5.37341430257983	5.42519334884252	0.386016066933159	0.187909314281214	0.486393381126994
Merged-chr9-71140330-4	chr9	71140258	71140458	+	837.237488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073483, intron 1 of 6)	intron (NR_073483, intron 1 of 6)	22275.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	4.31704695997073	4.14443624162107	4.64364138122448	4.77525055695197	4.51416654974966	4.29723642855716	4.58536407323616	4.31507087005133	-0.163022311772265	0.688258227135091	0.87268021244394
Merged-chr17-57279129-4	chr17	57279028	57279228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011691)	promoter-TSS (NM_011691)	28.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	6.67877181398301	6.41975612091712	6.77948057385838	6.55949348272899	6.85550676749887	6.59475827201994	6.6605435378916	6.37606078455032	0.047255396056208	0.832176236277372	0.935745387641746
Merged-chr7-141265031-4	chr7	141265015	141265215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001252600, exon 4 of 9)	exon (NM_001252600, exon 4 of 9)	1309.0	NM_001252601	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	5.21175224686674	4.91334344788833	5.39569439334697	5.06772080604948	5.42071212790313	5.4207407420357	5.45045654117798	5.75830674040187	0.663190615147712	0.0257516020748757	0.151455724373637
Merged-chr14-12284786-4	chr14	12284657	12284857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284384, intron 1 of 4)	intron (NM_001284384, intron 1 of 4)	554.0	NM_001284386	218734.0	Mm.44068	NM_146051	ENSMUSG00000033111	3830406C13Rik	-	RIKEN cDNA 3830406C13 gene	protein-coding	5.97980147513695	5.7373098260151	5.98085888358627	6.02816958242575	5.41775170121479	5.97329642174759	5.97130407322593	6.05912909985362	-0.117831846461678	0.668692574612318	0.863196405156422
Merged-chr11-86717675-3	chr11	86717575	86717775	+	802.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 14 of 31)	intron (NM_001003908, intron 14 of 31)	33594.0	NM_001098810	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	4.36542023165984	3.86688378056233	4.11933610197125	4.20435863111365	3.69119438889761	3.99175477659872	4.00791087763907	4.20441755240558	-0.457244208104791	0.308091233344808	0.620472469916053
Merged-chr3-15861490-1	chr3	15861390	15861590	+	640.0	f0_balb.idr	Intergenic	RLTR45|LTR|ERVK	-13003.0	NM_001173459	100038947.0	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	3.59513897783262	3.78990251460893	3.88238305965213	3.46103727969395	3.29236056329365	3.47680373036175	3.41176709547208	3.69638996418443	-0.692651076343908	0.182226655350252	0.47878218634963
Merged-chr15-57929572-4	chr15	57929441	57929641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356310, intron 3 of 19)	intron (NM_001356310, intron 3 of 19)	17342.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	6.74668736363894	6.48573206684688	7.00588770286099	7.04396326879712	6.9714663913473	6.81580006799645	7.40901048339006	6.97615880316576	0.30031368927125	0.202427793018012	0.504891999412331
Merged-chr8-117267615-4	chr8	117267499	117267699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	10580.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	5.24317707793972	5.27603629005807	5.509056500567	5.22492041201434	5.13510445033594	5.48364337204991	5.88318654461806	5.42291217072878	0.334815991256527	0.281457791794993	0.593543808318544
Merged-chr7-139298685-3	chr7	139298577	139298777	+	940.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50195.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	4.41644388673306	4.00169892212418	3.97658032194241	4.43107061356776	3.95105162616668	3.98924286897665	3.96045388089054	4.37653627497393	-0.394598508409225	0.373833577391046	0.677216414469042
Merged-chr5-139285540-4	chr5	139285426	139285626	+	956.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	32029.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	5.00471958494146	4.86166526458592	4.64553082281038	4.81301730421923	4.66813507857064	4.89988071429371	4.53919679962163	4.90457656273278	-0.164049529639157	0.631431753014084	0.843398388661416
Merged-chr1-92652155-3	chr1	92652088	92652288	+	805.988892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3347.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	3.49923313178231	3.22471397920536	3.49973508280177	3.471487187978	3.44287203605475	3.1940212390187	3.38100436202513	3.27733037750886	-0.338789806393734	0.521464836376328	0.781432035905523
Merged-chr13-55447861-4	chr13	55447767	55447967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038018, intron 1 of 15)	intron (NM_001038018, intron 1 of 15)	2536.0	NM_001112711	26385.0	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	6.45172477599154	6.2585648967136	6.55379906972552	6.36417077059067	6.6740728059646	6.85236598057996	6.79374029185332	6.53285743499203	0.451763787636328	0.0336911895485881	0.180879551788815
Merged-chr10-22376625-4	chr10	22376549	22376749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14755.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	6.93900485133414	6.80216196669	7.21783357812793	6.99633412117129	6.36132505699053	6.4656846597759	6.78819004959662	6.45670407127463	-0.671951908768827	0.00214662514734546	0.0247183890421602
Merged-chr4-20042079-4	chr4	20041973	20042173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010281)	promoter-TSS (NM_010281)	21.0	NM_010281	14590.0	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	7.27760076275359	6.8602592709505	7.248246357574	6.99970657673909	6.99740803231317	6.61421399635215	7.47950424979153	6.77236803233776	-0.124863862757809	0.613078457487304	0.833094280855441
Merged-chr14-30655652-4	chr14	30655522	30655722	+	837.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177815, intron 1 of 12)	PB1D10|SINE|Alu	1247.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	3.79967233738767	3.74955580524146	4.04006769095629	4.17570796925925	3.70832634632928	3.68756054674607	3.67635028797804	4.1218608616732	-0.432792625855675	0.364557470721163	0.669284676909589
Merged-chr8-26723318-3	chr8	26723218	26723418	+	745.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101105.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	3.41401612753076	3.54408055485399	3.47462623959953	3.23653630440402	3.90825529209724	3.9991667745123	3.46143722450103	3.47278256757963	1.02510723903143	0.0457666530895562	0.219398208530544
Merged-chr2-43795019-4	chr2	43794926	43795126	+	801.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 2 of 14)	intron (NM_001301831, intron 2 of 14)	46202.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	3.59977271720984	3.46637836370092	3.54575588488337	3.41687281193363	3.61099714914801	3.41602279243508	3.63735749875687	3.96550710440199	0.541276657740474	0.272439375025441	0.58387221080833
Merged-chr6-145767186-3	chr6	145767107	145767307	+	945.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41176.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	3.9618744277445	3.6129911637192	4.41735593745786	4.60342235387911	3.52243493003773	3.86938407228394	3.78903273668209	3.90949331233004	-1.19230082201663	0.0225643653950989	0.138775369318666
Merged-chr2-102974244-4	chr2	102974125	102974325	+	978.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72560.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.93550516313207	4.39790615199417	5.00231925621179	5.13727488035256	4.84328125433022	4.8900997280037	4.65248784883576	4.89869112583503	-0.16828272817076	0.643879676500096	0.849978747462225
Merged-chr12-80922131-4	chr12	80922035	80922235	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	2312.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	4.29315741318802	4.35891896615947	4.59266962268364	4.61172007062805	4.45416119089301	4.64496848626351	4.32207771755847	4.62709631563493	0.0747826810305864	0.841641987145252	0.939882709487764
Merged-chr8-116975223-4	chr8	116975142	116975342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027103, intron 1 of 2)	intron (NM_027103, intron 1 of 2)	3411.0	NM_001357254	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	6.26470053521182	5.59725992583885	6.07491240180006	6.44251946830674	6.06808596759163	5.63129801618717	5.93685852747103	6.20707971442799	-0.250032567439304	0.394600864315841	0.693682147756976
Merged-chr14-50352592-3	chr14	50352481	50352681	+	923.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41|LTR|ERV1	-5333.0	NM_205819	239081.0	Mm.291512	NM_205819	ENSMUSG00000051969	Tlr11	Gm287	toll-like receptor 11	protein-coding	3.62859712574096	3.60968363466244	3.68761329786972	4.02974386031592	4.24885989929704	3.80609807298874	4.01891963545391	3.89647763091499	0.669214432370757	0.165450093964959	0.456120385697813
Merged-chr7-16739708-3	chr7	16739606	16739806	+	869.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198613, intron 1 of 4)	intron (NM_198613, intron 1 of 4)	1262.0	NM_198613	232910.0	Mm.333597	NM_198613	ENSMUSG00000008036	Ap2s1	AI043088	adaptor-related protein complex 2, sigma 1 subunit	protein-coding	3.7400734379572	3.40655369973189	3.58900305204748	3.40010691005392	3.35671355936706	3.59369678774512	3.85788517541711	3.58696454206297	0.236570544251788	0.641466428585237	0.848739672716498
Merged-chr18-36286306-6	chr18	36286216	36286416	+	858.694458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008989, intron 1 of 1)	intron (NM_008989, intron 1 of 1)	5154.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	3.58192585029678	3.45464274632057	3.27270775577327	3.74862998963835	3.69681487485498	3.80669053802244	3.72242602798207	3.78401705841194	0.641554480826358	0.201474879511841	0.503898569493924
Merged-chr15-102073753-4	chr15	102073638	102073838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145625)	promoter-TSS (NM_145625)	-35.0	NM_145625	75705.0	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	8.13907282849248	8.39693479555725	8.01022579493163	7.77890683752649	8.2970247193706	8.33039553299201	8.19100728992935	7.89002214760536	0.120012326911246	0.545843471846936	0.796010912204515
Merged-chr18-69575487-4	chr18	69575365	69575565	+	950.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	229305.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	4.31178011841784	3.89133954227779	4.23082507195915	4.34498154491202	4.03103668796906	3.63779584108099	4.21154775017438	4.09499962686874	-0.512705852956534	0.257657359605608	0.569470367935649
Merged-chr13-55020310-4	chr13	55020220	55020420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033245, intron 1 of 18)	intron (NM_001033245, intron 1 of 18)	499.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	7.16873736258644	6.60380088572725	7.06728884030268	7.20813354841906	7.04363155855596	7.09274907144765	6.8673217170187	7.09747073973251	-0.0144087420032696	0.946964574227388	0.98101762641852
Merged-chr1-120121191-4	chr1	120121121	120121321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172074)	promoter-TSS (NM_001172074)	34.0	NM_001172074	73103.0	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	7.518293620922	7.70610984996345	7.73928296312906	7.72925719019647	7.95944701044075	7.98721466616108	8.08007161831434	7.65930551664715	0.328152301154564	0.0626462882742322	0.265199107608557
Merged-chr6-129388368-4	chr6	129388253	129388453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2479.0	NM_001204223	71183.0	Mm.79402	NM_027709	ENSMUSG00000030158	Clec12b	4933425B16Rik	C-type lectin domain family 12, member B	protein-coding	6.19060182315421	5.74911553518064	6.360694286627	6.53564706378836	5.34204417849177	5.34918927698254	5.85538109445343	5.62688844371037	-1.11606541185941	0.000191719185716972	0.00351077435558228
Merged-chr7-19283183-3	chr7	19283132	19283332	+	900.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013648, intron 1 of 9)	intron (NM_013648, intron 1 of 9)	608.0	NM_013648	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	3.25921639051591	3.27581817076334	3.55713899844268	3.53020252559256	3.59786119927072	3.61875091889659	3.5428005941864	3.79628617975404	0.711754168530287	0.158277558255788	0.445139607218331
Merged-chr5-33003757-4	chr5	33003632	33003832	+	827.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15084.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	4.49020958697071	4.10442577493408	4.73604563900843	4.69782229607719	3.8290283743843	4.41030918031906	4.21618522166945	4.02876086414819	-0.982437327925992	0.025392058034156	0.150139665958896
Merged-chr2-11548743-4	chr2	11548637	11548837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	5192.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	6.29913258021139	6.13560187342584	6.49010963494359	6.61031187808214	6.191417308984	6.03893834878101	6.30453178707622	6.51707047069185	-0.199748022152726	0.414678175877524	0.70914229032969
Merged-chr11-4266801-3	chr11	4266671	4266871	+	746.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039537)	promoter-TSS (NM_001039537)	-25.0	NM_001039537	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	3.99200544276693	4.07323664983424	3.64172571327296	3.86536735881455	3.69377579601366	3.92414430355123	3.50930028043987	3.69606193814144	-0.563856896276594	0.235144879371776	0.545120419776045
Merged-chr2-181242041-4	chr2	181241937	181242137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183162)	promoter-TSS (NM_183162)	-10.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	7.63650332420714	7.98229955313846	7.75670994524255	7.36051113726028	8.19618063843474	8.26053267413286	8.1227475422121	7.91802682173978	0.563915481224154	0.00410009683279153	0.0408511747566165
Merged-chr2-120111050-4	chr2	120110958	120111158	+	908.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 3 of 5)	MIR|SINE|MIR	43517.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	4.59343184848255	4.82761118408324	4.46616389497762	4.99356417156985	4.1216598966765	4.76768775463543	4.61247455654592	4.63112734181996	-0.446203909667569	0.26163153258696	0.57360533659851
Merged-chr15-59800436-3	chr15	59800327	59800527	+	881.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-5468.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	3.03708948657243	3.39533769944866	3.09565493486268	3.49896028514095	2.54346612251235	2.72953666519609	2.83688445689664	2.70002640736241	-3.01445466578928	0.000104537915537724	0.00210790489803391
Merged-chr15-79804561-4	chr15	79804431	79804631	+	841.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030689, exon 1 of 5)	exon (NM_030689, exon 1 of 5)	178.0	NM_030689	73340.0	Mm.38438	NM_030689	ENSMUSG00000022421	Nptxr	1200009K17Rik|1700036C17Rik|5730406O18Rik|AI452369|AI785356|D15Bwg0580e|NPR|Npcd	neuronal pentraxin receptor	protein-coding	3.87108023172823	3.70912452953334	3.51751892209325	3.33320970400802	4.02263265065153	3.5112208740318	3.44559034182418	3.57251325955036	0.165741100550764	0.756242417338052	0.904221096926321
Merged-chr6-4973526-4	chr6	4973429	4973629	+	780.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	70209.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	4.91211212952742	4.38618566271275	4.34219936692263	4.67231616401755	4.25712547762047	4.27518855563018	4.13104149403472	4.33950183823552	-0.816064588325472	0.0403013338189449	0.202800186631225
Merged-chr7-116504269-4	chr7	116504170	116504370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130479)	promoter-TSS (NM_001130479)	-99.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	9.18234534649898	9.12476970884613	8.93696845014569	9.18665735426287	8.87521953677297	9.14451778001717	9.15565328499146	8.73773612419741	-0.154485287760198	0.345899321877305	0.654216076736587
Merged-chr11-116031221-4	chr11	116031102	116031302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286006, intron 1 of 15)	intron (NM_001286006, intron 1 of 15)	886.0	NM_172569	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	6.12227711625817	6.42190924634279	5.61331796708135	5.57912964468485	6.52059178934538	6.19528961003981	5.87534935386807	6.05750881219987	0.330613566241763	0.285537481783153	0.597298392918655
Merged-chr10-75105798-3	chr10	75105723	75105923	+	918.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081412, intron 1 of 22)	MER58A|DNA|hAT-Charlie	44927.0	NM_001081412	110279.0	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	3.87772911645567	3.87516581671609	3.82193686567834	4.68548823331917	3.9112797171221	3.82260992157949	4.19718636090807	4.37293689015076	-0.114586164647748	0.825418769939001	0.933097476780564
Merged-chr17-78679624-2	chr17	78679527	78679727	+	774.25	f0_balb.idr|f1_balb.idr	intron (NM_011500, intron 6 of 17)	Lx10|LINE|L1	56933.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	3.37199906279048	3.40935711457739	3.26563484781436	3.62371261851904	2.930922762932	2.9874824221054	2.94392460546061	3.08516453553131	-1.86138052713349	0.00210278036958786	0.0243016405141897
Merged-chr7-89236300-4	chr7	89236199	89236399	+	919.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 5 of 14)	intron (NM_001360746, intron 5 of 14)	102488.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	5.32162862804878	5.25585141036048	5.9479483343075	5.98190045980736	5.2686453897517	4.99966386124134	4.74790178581371	4.85507930370566	-1.23676261709422	0.000532968734113962	0.00812774367644745
Merged-chr17-15695771-4	chr17	15695668	15695868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9199.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	7.16600276946329	7.29872751921816	7.17881530911086	7.52274202611948	7.32063593555569	7.30870367076326	7.48373816420139	7.38601902566037	0.082063219877281	0.664460661752041	0.861009602629657
Merged-chr11-55155221-4	chr11	55155124	55155324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3518.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	6.68913712652062	6.55635875271658	6.59933327864313	6.71643629186398	6.68612746202489	6.21424083598582	6.6991582798041	6.65597063472749	-0.0854745118128594	0.696151280112304	0.877123749262983
Merged-chr2-30447423-4	chr2	30447331	30447531	+	844.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_138748, exon 10 of 10)	3' UTR (NM_138748, exon 10 of 10)	26768.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	4.03230323094173	4.22848819014853	4.17683224923558	3.89158045036786	4.08521050473107	3.99402004380743	4.54185899218202	4.21878658433374	0.37209356752774	0.38211304706794	0.684238214631303
Merged-chr5-68012865-4	chr5	68012768	68012968	+	816.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18967.0	NM_001018019	433899.0	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding	3.89880725814371	4.04480659484926	3.60401878500526	3.92605056330405	3.935857918406	4.12540448990246	4.28491256167779	4.34049788361095	0.769912659170023	0.0818359009235589	0.310500937731237
Merged-chr11-72940934-4	chr11	72940796	72940996	+	919.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-20273.0	NM_016745	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	3.33350362464007	3.73630271082121	3.9840300091356	3.69634176385178	3.72821724344337	3.70572182747292	3.57448770310116	4.02317527890956	0.182312207667857	0.717145513279039	0.886902970891993
Merged-chr1-105996274-4	chr1	105996203	105996403	+	831.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	5897.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	3.96356250675074	4.1022446860197	4.1810823383236	3.61927964249302	4.07214485167954	3.82278768339179	3.84971481972772	3.51570670157841	-0.385287567124794	0.436596752901263	0.72519520756011
Merged-chr13-101742863-4	chr13	101742769	101742969	+	938.2416380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	25348.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.46276969256169	4.83063401960097	4.79794758447788	4.89677860475594	4.68441360504024	5.07447970422905	4.81112442232673	4.71899559318213	0.112490475634339	0.747695732738479	0.90068822490119
Merged-chr17-30182934-4	chr17	30182841	30183041	+	925.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356265, intron 4 of 5)	intron (NM_001356265, intron 4 of 5)	177902.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	4.60402237839767	4.44335205644722	4.2827239347946	5.15466270347444	4.34898393713974	4.41324126668142	4.93376151439828	4.98547233652071	0.0363616896847642	0.934315630686757	0.976343716900135
Merged-chr2-167687704-6	chr2	167687576	167687776	+	862.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-1239.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	3.93771005848387	3.87502394138422	4.25005795413523	4.20770625613911	3.87124803703517	3.95383316588051	3.81825181412242	4.07889110340417	-0.415219580532565	0.34287951122049	0.6516462545027
Merged-chr3-121657091-3	chr3	121656991	121657191	+	847.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10638.0	NR_036458	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	3.6770569927155	3.59412937999475	3.92617956002884	3.8469697560488	4.07413752459089	3.48445367702669	3.76731529233202	3.78070494390613	0.101563296333055	0.835068199510614	0.937183298750505
Merged-chr3-81046700-3	chr3	81046600	81046800	+	975.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	10284.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	5.16214953319873	4.45742236338044	4.98522149268347	5.36484450859863	4.2305228275322	4.4156708695936	4.31786079529129	5.0438116955876	-1.03451331922071	0.0170655079948575	0.114897848873525
Merged-chr10-98792543-4	chr10	98792431	98792631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122111.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	6.61729675386336	6.374122770691	6.6184655263881	6.67412216081643	6.60146133233718	6.10265008726366	6.01411346090462	6.42152431616731	-0.380329884934062	0.119294940361366	0.382168336552625
Merged-chr18-13006514-4	chr18	13006427	13006627	+	823.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153087)	promoter-TSS (NM_153087)	-463.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	3.69190551408239	3.98581697739408	3.74832984378375	4.00089925190255	3.89822206651873	4.11898506618714	3.7867711131155	3.74629904959432	0.0524858130335352	0.908412218606749	0.966039998613106
Merged-chr11-98809695-4	chr11	98809588	98809788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138660)	promoter-TSS (NM_138660)	-120.0	NM_138660	192160.0	Mm.40120	NM_138660	ENSMUSG00000078676	Casc3	Btz|Mln51	cancer susceptibility candidate 3	protein-coding	8.18432965247955	8.66469421607873	8.20984629547104	7.89048228189374	8.43405830358357	8.54500250244021	8.22944917881237	8.05857971136216	0.0838164945034227	0.692954833203843	0.875187765226167
Merged-chr5-105616291-4	chr5	105616120	105616320	+	934.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-83749.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	4.03306283113292	3.95346631207563	3.77551666763426	3.68250894135836	4.06904276086805	4.51693867991478	3.64684530850681	4.28486954882211	0.827537142135169	0.0835706903042218	0.314301921439512
Merged-chr19-17342493-2	chr19	17342394	17342594	+	596.0	f0_balb.idr|f0_c57.idr	intron (NM_010265, intron 1 of 2)	MIRb|SINE|MIR	-2989.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	3.42590991747745	3.5093513902155	3.64870033858456	3.38961816768265	3.8698288180049	3.71386815306774	3.4141315277704	3.64658007966104	0.599670284336638	0.223368368290681	0.531423794590627
Merged-chr15-101266802-4	chr15	101266676	101266876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010444)	promoter-TSS (NM_010444)	-70.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	8.74345074070404	8.77305299707719	8.44622716752147	8.39073828930852	9.0058003450464	9.04724605695253	9.01949772583684	8.9553603279227	0.513984195401622	0.0013411686476598	0.0170652561980295
Merged-chr6-55037853-6	chr6	55037655	55037855	+	893.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_180678)	promoter-TSS (NM_180678)	-246.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	4.25556903354124	3.94942721269443	4.73583818771748	4.52956347241594	4.46309875765096	4.52397755384448	4.33034110157562	4.62877600253882	0.195368803128119	0.637024066492337	0.846526854227832
Merged-chr14-70867995-3	chr14	70867907	70868107	+	913.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045939, intron 2 of 3)	Lx|LINE|L1	15074.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	3.97851696597546	4.96393436448071	4.50779440634954	3.67062577750108	4.03339743309311	3.99258317635597	4.25020300474446	3.80386073175335	-0.857632643385046	0.105955138315625	0.358568953081721
Merged-chr12-32767052-4	chr12	32766950	32767150	+	920.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53285.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	4.68953437712006	4.26486883700884	4.49086131646654	4.69040630275625	4.73515647873925	4.48400311382298	4.55334542992624	4.82658656534573	0.233437201886593	0.52701736521254	0.784092827190823
Merged-chr4-83274371-4	chr4	83274276	83274476	+	920.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 2 of 19)	intron (NM_027238, intron 2 of 19)	49813.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	4.72089890886726	4.1738013647726	4.95145548014399	4.62041104114385	4.54369211548252	4.6593963399888	4.5474547698378	4.43768543111347	-0.201670357696553	0.602643463996036	0.827786670034761
Merged-chr6-113748900-2	chr6	113748800	113749000	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 19 of 19)	intron (NM_001036684, intron 19 of 19)	-8219.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	3.20471867866383	3.09702428793562	3.20512339437576	2.74010561603979	3.53953059258424	3.44159400237217	3.47104623741056	3.53386180415798	1.65946250460335	0.00354158812048675	0.0363784685131894
Merged-chr5-92368269-8	chr5	92368136	92368336	+	928.8035890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	MTD|LTR|ERVL-MaLR	-4940.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	2.95399007626042	3.31764920368866	3.28646432659292	3.08647128806027	3.42539659267402	3.56861109144279	3.58209149251195	3.22461202862854	1.04041924550394	0.0570419994583987	0.250277653919706
Merged-chr7-19523981-2	chr7	19523881	19524081	+	842.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027116, exon 4 of 4)	exon (NM_027116, exon 4 of 4)	5250.0	NM_027116	69547.0	Mm.77325	NM_027116	ENSMUSG00000060621	Nkpd1	2310015G09Rik	NTPase, KAP family P-loop domain containing 1	protein-coding	2.78631047886999	2.68608907018697	2.78668956393015	2.46333505478395	2.68263413107081	2.47368879719241	2.44297062246241	3.0031625266385	-0.0599230250323257	0.933508062905587	0.97600189092281
Merged-chr17-5807993-4	chr17	5807888	5808088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8498.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	5.57837042126948	5.5059725971029	5.60596708961365	5.86327542300151	5.5973876578552	5.52138512455509	5.91900309897254	5.33988189222014	-0.0791521969674118	0.782386523984023	0.91529005173258
Merged-chr9-118868025-4	chr9	118867920	118868120	+	960.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-58516.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	4.97871369275979	5.46860665124693	5.37527952032885	5.64027411491324	5.05644995002766	5.03981176680622	5.57885890650053	5.15593117047099	-0.321780423661115	0.330645889626514	0.641981554220558
Merged-chr4-134917209-4	chr4	134917109	134917309	+	946.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-2293.0	NM_027935	71817.0	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	4.71435586937357	4.70862975111045	4.79129841790356	5.26018258556633	4.89335418133215	4.20032890516839	4.52739411617743	5.08303602908317	-0.364573433198986	0.378678561977677	0.681198988427369
Merged-chr10-80433686-4	chr10	80433603	80433803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164151)	promoter-TSS (NM_001164151)	-50.0	NM_001164148	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	6.78732652366239	6.65243819290276	6.34550391096299	6.39161375753964	6.70376632378835	7.11981596721735	6.49476064015068	6.99899680781386	0.423833188603885	0.0760385015352488	0.297838946738032
Merged-chr2-167805932-7	chr2	167805825	167806025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114748.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	5.43539228687593	5.58782216576668	5.23019440512194	4.97532254033453	5.22436741841157	5.00289861460198	5.2961347883444	5.63269347808456	-0.0131361313773776	0.968245538061232	0.988694268692349
Merged-chr15-38650989-4	chr15	38650895	38651095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10909.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	5.67447399955066	5.38601202069108	5.74778363335085	5.95238080544929	5.50105067989205	5.26926854083599	5.57051233675344	5.69599570168498	-0.338466147926637	0.242448598684646	0.553187870424875
Merged-chr8-80916669-3	chr8	80916554	80916754	+	998.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-36135.0	NM_001301298	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	4.4700942986006	4.68406665198764	4.39158578181279	4.41581123988758	4.13703516385398	3.89868446354849	4.3712662055213	3.89825969854239	-0.982274497026843	0.019315366127502	0.125005617089521
Merged-chr8-79447508-4	chr8	79447391	79447591	+	976.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48023.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	5.20700836151938	4.7130259657379	5.64687352583369	5.91158172304949	4.83227233629626	4.56595734977139	5.11892819959875	4.96763678141842	-1.06458754643609	0.00781924357994873	0.0661076298997618
Merged-chr18-36281042-4	chr18	36280937	36281137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008989)	promoter-TSS (NM_008989)	-125.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	7.06221552285829	7.17441539787278	6.5406200604833	6.85360327391453	7.27113228847793	7.44297963886006	7.20901853400893	7.50592603779084	0.58780068016753	0.00581249257636146	0.0530712716472386
Merged-chr13-33965268-3	chr13	33965177	33965377	+	906.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163239, intron 1 of 5)	intron (NM_001163239, intron 1 of 5)	618.0	NM_001163241	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	3.64322050279641	3.4137141227667	3.20389903571981	3.5973006221456	3.4029584828042	3.44002223818866	3.37421947047769	3.44078756620214	-0.236295956894103	0.650010886598745	0.853021044216188
Merged-chr7-3289265-4	chr7	3289169	3289369	+	920.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001093764, exon 1 of 3)	5' UTR (NM_001093764, exon 1 of 3)	231.0	NM_001093764	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	4.1000481469424	4.15951917005758	4.15243050336584	3.98041254178294	4.60367408577519	4.42604268104729	4.48483811124671	4.80961024174421	1.19012607505808	0.0016506863166637	0.0201430141151732
Merged-chr4-119980067-4	chr4	119979896	119980096	+	946.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	(TG)n|Simple_repeat|Simple_repeat	165318.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	3.90765622538735	4.15819006582365	4.35002170938318	3.81303099487223	4.17837385473111	3.86008177388585	3.89238457985334	4.10120056392998	-0.111649626408425	0.804424422728043	0.924756680030242
Merged-chr14-61556904-4	chr14	61556813	61557013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025697)	promoter-TSS (NM_025697)	-27.0	NM_001310603	66674.0	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	8.49084087889547	8.89789279289953	8.63505549265123	8.58903432267596	8.62315151092423	8.78565318832283	8.59108178047458	8.54582482375378	-0.0299133097415687	0.853892095019578	0.944905950148447
Merged-chr14-115092238-4	chr14	115092128	115092328	+	939.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175500)	promoter-TSS (NM_175500)	13.0	NM_175500	103978.0	Mm.320791	NM_175500	ENSMUSG00000022112	Gpc5	A230034F01Rik	glypican 5	protein-coding	5.38145097926926	5.54323920247389	6.012353918143	5.90004252818217	5.02964493453527	4.79916639287542	4.94926604072955	5.287801397449	-1.27326217837544	8.02408119197529e-05	0.00168529381871823
Merged-chr10-94378483-4	chr10	94378373	94378573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	66524.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	7.51165533292451	7.70867644907412	7.84563318206836	7.6950785800336	7.46749732434843	7.26338652054049	7.55664366363709	7.60602996123009	-0.283573735301135	0.115938574708048	0.376739729596271
Merged-chr2-32965697-3	chr2	32965603	32965803	+	755.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	2402.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	3.51213357238719	3.36835826330453	3.24866194441691	3.20333717425322	3.21418936625801	3.02693735087475	2.91030349324042	3.55713467331055	-0.489376702855615	0.415271600126028	0.709530099060962
Merged-chr18-20961611-4	chr18	20961534	20961734	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026301, intron 1 of 5)	CpG	17009.0	NM_026301	67664.0	Mm.45980	NM_026301	ENSMUSG00000033107	Rnf125	4930553F04Rik	ring finger protein 125	protein-coding	4.50839958785206	4.35635373210971	4.80706903497895	4.66806512706133	4.19909962461373	4.59756780043725	4.52937871859569	4.73572915475279	-0.171952006092518	0.654676541187302	0.855659697629251
Merged-chr4-11022982-4	chr4	11022886	11023086	+	965.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15367.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	4.7158187339926	4.47690271597464	4.9793129934797	5.24544924300998	4.76958812369977	5.08337459720639	4.88595019578112	5.24897569137701	0.195859296154866	0.60173394128758	0.827201131888227
Merged-chr19-12815391-4	chr19	12815231	12815431	+	890.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134152, intron 3 of 8)	Lx2B|LINE|L1	16752.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	4.08327695618994	3.91509336523059	4.12687176945494	3.85168123339043	3.98536157851571	4.01732440356502	3.82865136954225	3.67379539533131	-0.285224115296266	0.522071278537416	0.781821472022301
Merged-chr18-4313447-1	chr18	4313347	4313547	+	611.0	f0_c57.idr	Intergenic	Intergenic	39506.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	3.639966853706	3.46321388126102	3.94631249941556	3.97410805945269	3.77513306314522	3.81530498145658	4.01533369592775	3.74854717742923	0.166888319891396	0.72936895537895	0.892606046472237
Merged-chr5-125271712-4	chr5	125271619	125271819	+	889.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69375.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	3.99771806769842	4.08899500411654	3.71799056147696	3.9887961571638	4.35128290435442	4.06949700947964	4.29048504087367	4.22628616550267	0.728937808768646	0.0798978773175342	0.306150463478939
Merged-chr10-40832391-4	chr10	40832280	40832480	+	955.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027879, exon 15 of 15)	3' UTR (NM_027879, exon 15 of 15)	50763.0	NM_027879	71713.0	Mm.46063	NM_027879	ENSMUSG00000038446	Cdc40	1200003H23Rik|EHB3|PRP17	cell division cycle 40	protein-coding	4.73001551433031	4.75155124824299	5.42968419366787	5.36519996491474	5.16334528354824	4.82299559550379	5.42720423721719	5.26229420635361	0.126221657482698	0.72973006484608	0.892787024281598
Merged-chr18-36465217-4	chr18	36465100	36465300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-10705.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	7.35437911230944	7.31967571975856	7.12896875017612	7.24661461649902	7.24111206661145	7.40797232082845	7.15077523306655	7.05092961939466	-0.0628995092082653	0.736233810444045	0.895944255036988
Merged-chr4-139616276-3	chr4	139616119	139616319	+	700.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 8 of 8)	intron (NM_001205173, intron 8 of 8)	-6675.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	2.76679874746681	2.94489332091896	2.88264807755709	2.30630628191404	2.55178088834337	2.60712122357157	2.41880726342955	2.63916771049658	-0.963875500231539	0.199846905637342	0.501848752738062
Merged-chr14-30479556-4	chr14	30479473	30479673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133761)	promoter-TSS (NM_133761)	8.0	NM_133761	75901.0	Mm.28733	NM_133761	ENSMUSG00000021962	Dcp1a	1110066A22Rik|4930568L04Rik|AU019772|D14Ertd817e|Mitc1|SMIF	decapping mRNA 1A	protein-coding	7.22124852669298	7.47619278849598	7.29722798707433	7.15765900562992	7.18936998959044	7.10394119016747	7.40685483018857	7.11435929851814	-0.106996444628541	0.576426327550845	0.813520896079505
Merged-chr19-28964403-2	chr19	28964323	28964523	+	772.5	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_198651)	promoter-TSS (NM_198651)	-269.0	NM_198651	381218.0	Mm.280653	NM_198651	ENSMUSG00000064202	4430402I18Rik	AW122618|Spata6l	RIKEN cDNA 4430402I18 gene	protein-coding	4.29950047211311	4.25628502495788	4.07870720158758	4.08358736902687	4.12937926378214	3.99076588495121	4.1973220775446	4.07629604570644	-0.190401750446599	0.638963281152174	0.847417204773176
Merged-chr2-19371967-4	chr2	19371812	19372012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029619, intron 1 of 4)	CpG	276.0	NM_029619	76467.0	Mm.27166	NM_029619	ENSMUSG00000023094	Msrb2	2310050L06Rik|Mrsb|Msrb|Pilb	methionine sulfoxide reductase B2	protein-coding	5.36850681373522	5.90089066334718	6.09137673030791	5.70608527596419	5.35661074095391	5.548361912641	5.62969609399607	5.8233458383623	-0.328374039246052	0.265687765168222	0.577343448210064
Merged-chr3-130058647-4	chr3	130058569	130058769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207209, intron 1 of 23)	intron (NM_207209, intron 1 of 23)	2238.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	5.84239317331767	5.81908989592994	5.71406658082278	6.07632349154801	6.02377309329447	6.20143482535293	6.34422919724619	6.06395320217535	0.424672717910431	0.0901474206158806	0.327810749114653
Merged-chr3-75219403-1	chr3	75219303	75219503	+	556.0	f0_c57.idr	Intergenic	Intergenic	50675.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	3.19852729006005	3.25646767233412	3.19889404139364	3.24649972943293	3.62635629271854	3.43326675743717	3.46871861143449	3.37508080086201	0.902574302137132	0.078039726725897	0.302120619418178
Merged-chr9-20889402-4	chr9	20889312	20889512	+	877.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145610, exon 3 of 11)	exon (NM_145610, exon 3 of 11)	1237.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	4.38045866376101	3.99088578325214	4.10656424333549	3.89950044669617	4.26888554407066	4.33269522729163	4.68245851497997	4.45805885620191	0.855609799443983	0.0359754984894453	0.188408538512677
Merged-chr5-101972830-4	chr5	101972732	101972932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 4 of 66)	B2_Mm2|SINE|B2	97089.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	6.35377346373581	6.14707294302301	5.90519609377162	5.83941395290053	6.12572823666486	6.49477069997534	6.03525785995459	6.49605489683489	0.356149466792649	0.172035463777805	0.465252629537357
Merged-chr7-25711059-6	chr7	25710997	25711197	+	734.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028771)	TTS (NM_028771)	7956.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	3.34110274411001	3.37023282305553	3.3977995239824	3.498978538259	3.66627616788341	3.45409808407647	3.14682487202699	3.15513579380699	-0.078914124813015	0.886649663191851	0.957446551626423
Merged-chr6-124688519-4	chr6	124688351	124688551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 1 of 11)	intron (NR_149320, intron 1 of 11)	23727.0	NM_013536	14791.0	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	5.77509111492448	5.52221241497729	5.513913658663	5.16297165198246	5.65525368326853	5.13958462416466	5.15712550845904	5.34009299579649	-0.251886925350899	0.433292961159761	0.722830392839943
Merged-chr12-4593749-4	chr12	4593655	4593855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198969, intron 1 of 16)	intron (NM_001198969, intron 1 of 16)	747.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	5.38111099403016	4.9974946417266	5.26627544649635	5.52531897048505	5.30303751116313	5.05940095385604	5.17863669282867	5.23198922342084	-0.216109311591634	0.484233313691203	0.758388554726856
Merged-chr2-59160193-4	chr2	59160070	59160270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026361)	promoter-TSS (NM_026361)	513.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	5.46676927158628	5.87894604885765	5.91369457422338	6.0464399491671	6.07370983141475	5.37357103394594	5.88348912249257	6.03551217718922	0.0377409729671408	0.897614677163771	0.961755066043397
Merged-chr4-74251844-4	chr4	74251744	74251944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144787)	promoter-TSS (NM_144787)	-35.0	NM_144787	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	9.22643642253399	9.1874298449899	9.05756791592244	9.43016897971099	9.32469322053186	9.33655336537801	9.39277736668918	9.34172671635967	0.136565720627639	0.353364911765268	0.660196363445326
Merged-chr2-121355390-4	chr2	121355241	121355441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2435.0	NM_001355069	12716.0	Mm.252145	NM_009897	ENSMUSG00000000308	Ckmt1	Mt-CK|ScCKmit|U-MtCK|UbCKmit|mi-CK|mia-CK	creatine kinase, mitochondrial 1, ubiquitous	protein-coding	6.72062718749762	6.93194116820226	6.82430276862638	6.66392450037362	6.96719585179914	6.92904377810487	7.26192764145958	6.86092490193539	0.32252072942651	0.11549188402804	0.376039376663093
Merged-chr11-100927547-3	chr11	100927459	100927659	+	884.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_213660, intron 1 of 23)	intron (NM_213660, intron 1 of 23)	11981.0	NM_213660	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	3.62852108224836	3.73414458839174	3.7398197776547	3.49775763606663	4.02459960499648	3.68754295550155	3.9632322859057	3.97875275972166	0.830755594715707	0.066990609074279	0.276056536982464
Merged-chr4-152153973-4	chr4	152153874	152154074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1767.0	NM_207687	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	7.2546602046695	7.27407111983451	7.41886968671121	7.47940353587079	7.13808611329978	7.15500728716418	7.5830876292538	7.32473069338572	-0.0752929534456978	0.700265025182879	0.879054781621322
Merged-chr6-128798420-4	chr6	128798321	128798521	+	877.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9780.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	4.31557167449541	4.41558697575278	4.43991222040799	4.62955410334385	4.26532148245027	4.03598484681754	4.06261092448354	4.22399397050713	-0.756066256277132	0.0578383534428427	0.252491638129905
Merged-chr10-63122768-4	chr10	63122680	63122880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182992, intron 16 of 19)	intron (NM_182992, intron 16 of 19)	22624.0	NM_016864	53404.0	Mm.228661	NM_016864	ENSMUSG00000036816	Atoh7	Math5|bHLHa13	atonal bHLH transcription factor 7	protein-coding	6.38571351655884	6.42355730104979	6.03337983215347	6.27067303870967	6.44503492956074	6.25480419354886	6.30198464343928	6.00624706485389	-0.0273671573330944	0.90851381096761	0.96607464446
Merged-chr4-129741394-4	chr4	129741307	129741507	+	965.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011317, intron 1 of 8)	CpG	896.0	NM_011317	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	4.21436372188975	3.95707227519414	3.8363700916056	4.2162862640548	4.48121968525976	4.34276215362679	4.52325095787548	4.67930105824874	1.03431165389134	0.0110324385039874	0.084656957770086
Merged-chr6-127351870-4	chr6	127351779	127351979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-43912.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	6.5890141449337	7.15650216830986	6.97283408511381	6.28713362734611	6.61055828938582	6.78277153207053	6.45716677281984	6.12909604609058	-0.388928509445422	0.161349199812076	0.450079346844213
Merged-chr2-163764568-3	chr2	163764482	163764682	+	999.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14343.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	5.18432213342089	4.85242876444712	5.16044404913283	5.37553185702935	3.35226478295635	3.59910925477018	3.61257842689536	3.62393905957732	-5.55193828822101	1.8156099437079e-12	1.85680028998829e-10
Merged-chr5-92374883-4	chr5	92374778	92374978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-11582.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	7.76306355433615	7.96602070072718	8.07291328345074	7.38659691779454	7.72330972601333	7.71206325448141	7.71096832139084	7.30468824033531	-0.246802162929097	0.253569344733066	0.564890375536131
Merged-chr6-131272515-4	chr6	131272410	131272610	+	980.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20734.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	5.50766982219361	5.29776023591579	5.2867356867524	5.37429524091184	5.29307803586824	5.43001244255609	5.19891244443621	4.89714447892036	-0.268908068752458	0.369898547558409	0.674099060526606
Merged-chr7-19004116-4	chr7	19004041	19004241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178757)	promoter-TSS (NM_178757)	76.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	5.88079692946224	6.17597734634794	6.48413031490269	5.76368776777327	6.05559282788648	6.15094009892292	5.89898575570549	5.97063685848255	-0.110414448248852	0.685458841944581	0.871409613223223
Merged-chr14-65414501-4	chr14	65414386	65414586	+	900.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010932, intron 1 of 3)	Lx4A|LINE|L1	10986.0	NM_001205075	18155.0	Mm.16347	NM_010932	ENSMUSG00000045731	Pnoc	N/OFQ|Npnc1|OFQ/N	prepronociceptin	protein-coding	3.91147945521296	4.2520223059063	3.85836564561848	3.04638068736301	4.20731932137803	4.32482676427286	3.78690210728032	4.3132925779356	0.844235104773069	0.13741101159481	0.412339394027364
Merged-chr12-105968214-3	chr12	105968112	105968312	+	887.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42051.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	2.65496136749967	2.96353400180268	3.18693654873813	2.65303410038119	3.30638180395199	3.24460375852828	3.17351960262044	3.00967707188269	1.28661276768674	0.0433275252860049	0.211726618311997
Merged-chr9-41161649-4	chr9	41161629	41161829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3667.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	6.57045774533973	7.19488958915432	6.77969670625162	6.4542252409378	7.46212561103819	7.37839630295872	7.18660643596273	6.49545120248652	0.562137778597822	0.0424694516410789	0.209257448315129
Merged-chr17-83654736-4	chr17	83654605	83654805	+	887.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22810.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	4.15096460955014	4.16983892182876	3.95709540825709	3.95796307571985	4.06314564094308	4.23023870393756	4.13329519132003	4.19331837767431	0.250304827940692	0.537238860361803	0.790977285921248
Merged-chr17-67213852-4	chr17	67213763	67213963	+	972.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	140596.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	4.49670011438083	4.80288416765422	4.62458880192491	4.8376516653606	4.69074944520323	4.79783416958629	4.88823521130354	4.30348305890054	-0.0439788210826487	0.90483118122421	0.964691960037782
Merged-chr12-83689101-4	chr12	83689007	83689207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008943, intron 1 of 11)	intron (NM_008943, intron 1 of 11)	544.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	5.7373098716671	5.98359761239282	5.90926889484828	5.92692928020316	6.00786680380184	6.23361493844383	5.7849400811954	5.90506370680747	0.15010124681434	0.546938875497227	0.796638012378211
Merged-chr1-50805027-4	chr1	50804985	50805185	+	833.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122438.0	NM_019790	56363.0	Mm.245154	NM_019790	ENSMUSG00000026109	Tmeff2	4832418D20Rik|7630402F16Rik|TR-2	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding	3.01504829608024	2.74653980407276	3.13221463069759	3.15478584297668	2.92017002705955	3.18546115711701	3.00471546593695	3.07352450055443	0.0763412599523963	0.899395277791148	0.962561744119446
Merged-chr10-8029041-4	chr10	8028952	8029152	+	968.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-72929.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	5.04915777753078	4.51382537661576	4.63096901008757	5.28087538493518	4.28598186028727	5.15766144332931	5.31188608983396	5.22774878547479	0.265491529382142	0.537171865894548	0.790977285921248
Merged-chr6-66929831-4	chr6	66929736	66929936	+	945.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177556, intron 2 of 3)	Lx8|LINE|L1	32945.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	4.49809699052711	4.54288714328083	4.99104173546803	4.96568724664149	4.71337273151812	4.48375762333527	4.93492356566968	4.98759870929851	0.0302124630075691	0.935145325225456	0.976465285317276
Merged-chr4-57027263-3	chr4	57027166	57027366	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355492, intron 19 of 24)	intron (NM_001355492, intron 19 of 24)	-36875.0	NM_001142965	230235.0	Mm.207654	NM_001142965	ENSMUSG00000045589	Frrs1l	6430704M03Rik	ferric-chelate reductase 1 like	protein-coding	4.97086508053697	5.00903054846799	5.26839986525196	5.30955888184248	3.63174327112658	4.10246964166048	3.95362617695408	4.02984197996133	-3.08514956190169	4.45202215981676e-12	4.2939090150894e-10
Merged-chr5-127616938-2	chr5	127616838	127617038	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133895, exon 1 of 8)	exon (NM_133895, exon 1 of 8)	454.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	5.26713033312479	5.20945434957888	5.29808688079986	4.89178674693381	5.20295259462518	5.31554193797988	5.46264438333709	5.32372496810906	0.311184278817233	0.30481895863959	0.617348375501704
Merged-chr10-52232748-3	chr10	52232666	52232866	+	912.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347444)	promoter-TSS (NM_001347444)	-853.0	NM_001347444	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	3.56172543762388	3.58474749845271	3.9874290541892	3.1846737762353	3.15877830172662	3.03905523506074	3.13927894951708	3.39887265900741	-1.48339093378259	0.0147266731460895	0.103492135204218
Merged-chr11-19020548-4	chr11	19020455	19020655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1586.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	7.02818943808392	7.10629915581803	6.73598728431368	7.19733935373976	7.23464309211073	7.21866767680732	7.31031031665122	6.96058054823015	0.203763387295547	0.318450022721482	0.63033847433642
Merged-chr18-61640794-4	chr18	61640696	61640896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045420, intron 1 of 2)	L3|LINE|CR1	1143.0	NR_045420	545261.0	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	5.37397623959528	6.0722923264567	5.4672212561911	4.99261628472239	5.72884005752114	6.10728038538179	5.37934527069128	5.8451072967124	0.425253569171289	0.224774867500804	0.53323724482868
Merged-chr7-44856726-4	chr7	44856601	44856801	+	869.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021549)	promoter-TSS (NM_021549)	-445.0	NM_021549	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	3.90525513239908	4.25550605372231	4.31282646484568	3.83730901430753	3.83056009892826	4.31783261037168	3.99086998834591	3.79296534772343	-0.246018055742356	0.594372969456174	0.823411261518897
Merged-chr6-82715806-4	chr6	82715701	82715901	+	851.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58653.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	3.64866201844384	3.7401166858403	3.59278566455729	3.6313606712088	3.94673213975317	3.45437248203099	3.78874446371119	4.02558285457721	0.515540928602163	0.279409201182292	0.591495502480744
Merged-chr15-37100407-2	chr15	37100292	37100492	+	682.083374	f0_balb.idr|f0_c57.idr	Intergenic	MLTR11B|LTR|ERVK	-92990.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	4.05351794554196	4.26412750750032	4.10156214375765	4.11539515714816	3.95849059733583	4.22542021431468	4.08388540504238	4.00261379759463	-0.187382184024034	0.647744065988239	0.851823058658997
Merged-chr3-109264711-1	chr3	109264611	109264811	+	823.0	f0_balb.idr	Intergenic	Intergenic	-75972.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.14129201951558	3.31422703703212	3.82707910634978	4.04005568541976	3.84947283966209	3.72349399026314	3.99831862272765	3.77287260200485	-0.0852021132839947	0.869126305043416	0.950890741040292
Merged-chr10-62504928-3	chr10	62504847	62505047	+	856.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	B1_Mur4|SINE|Alu	2810.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	2.96187777034104	2.96696370860462	3.07805574951455	2.93308056146737	2.87175058480609	2.79874170876041	3.11909814424118	2.96077679281282	-0.17603287076301	0.767429191016228	0.909006991326805
Merged-chr15-97520641-1	chr15	97520541	97520741	+	843.0	f0_balb.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	185181.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	3.85110699643452	4.06642142634913	4.44128571249202	4.71081446094185	3.93748235288193	3.97412109287967	3.8368402230681	4.10881207596167	-0.922875426298812	0.0511576587225288	0.234706899586286
Merged-chr13-112130425-4	chr13	112130294	112130494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER30|DNA|hAT-Charlie	-158057.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	6.33560503680878	5.84130641124131	6.21036004462542	6.32774192191148	5.82424745940173	6.20277871936764	6.03878817669644	6.22475084424878	-0.193774176646218	0.448693088288884	0.733878953633932
Merged-chr6-38695605-4	chr6	38695499	38695699	+	876.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32530.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	3.88819901803073	4.46244614718762	3.88871795955446	3.97971344282415	4.2403155755988	4.27511186966345	4.08300869059811	4.58033021027466	0.564450880264844	0.199273005092777	0.501101497961657
Merged-chr8-46640018-4	chr8	46639914	46640114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009810)	TTS (NM_009810)	22723.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	6.33050590377437	6.14164433489245	6.49455697594706	6.37439783912969	5.91580893889677	6.10156968267796	6.09248537338425	5.8198821567392	-0.55073020088154	0.020033737273177	0.128201149453157
Merged-chr1-171260624-2	chr1	171260536	171260736	+	798.5	f0_c57.idr|f1_c57bl6.idr	3' UTR (NM_172845, exon 9 of 9)	3' UTR (NM_172845, exon 9 of 9)	-9692.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	2.93398742044914	2.77371409567643	2.93430174693749	2.33530784435565	4.0003701236058	3.91940035215488	3.62702541161632	4.10580914915859	6.63274811010253	1.21797427700853e-13	1.56487709500344e-11
Merged-chr4-124803080-4	chr4	124802941	124803141	+	742.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008636, intron 1 of 10)	intron (NM_008636, intron 1 of 10)	492.0	NM_008636	17764.0	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	4.22963882475971	4.12683856280454	4.04990587290331	4.06447485987851	4.23472412249215	4.22160832478624	3.93330258832284	3.89365585700975	-0.0758642217967941	0.856140654080313	0.945844091213898
Merged-chr7-127254265-4	chr7	127254153	127254353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177362, exon 3 of 3)	exon (NM_177362, exon 3 of 3)	6414.0	NM_023203	66422.0	Mm.29898	NM_023203	ENSMUSG00000042462	Dctpp1	2410015N17Rik|AI854235|RS21-C6	dCTP pyrophosphatase 1	protein-coding	7.60053530438579	7.58925191041562	7.4025691781077	7.17333388450626	7.94090460510205	7.85573713820959	7.70495706629075	7.9193310300517	0.550912110313563	0.00311091185414207	0.0328728614706025
Merged-chr13-45371831-4	chr13	45371724	45371924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17918.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	7.13355089072809	7.36465333999907	7.19116702993791	7.02185603850741	7.2337760925013	7.02903611360493	6.90013917210201	7.18613046967897	-0.1069737454782	0.589034241603533	0.820158760819336
Merged-chr10-76346269-4	chr10	76346161	76346361	+	913.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081419)	promoter-TSS (NM_001081419)	-970.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	4.43582429310365	4.31504274132337	4.62017633077365	4.49103623717932	4.32694874531666	4.34871225511443	3.83117590780181	3.96161515931998	-0.795057633395386	0.0602220688114832	0.259108469600107
Merged-chr19-45673194-4	chr19	45673134	45673334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13041.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	5.46304810092422	5.79033008232742	5.72848590311843	5.99684304829202	5.6668103408035	5.51843784781526	5.34608508046499	5.36888107958129	-0.482250128133578	0.0912532547989601	0.330096835052863
Merged-chr3-132033988-4	chr3	132033895	132034095	+	872.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51297.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	4.22183506809815	4.36830204967896	4.22247776603655	4.13340037460667	4.42464195631305	4.2542638686054	3.90500483774136	4.21987844481771	-0.0270745435083171	0.947477691776668	0.981224114634902
Merged-chr1-65010328-4	chr1	65010248	65010448	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22411.0	NM_001310617	70861.0	Mm.18725	NM_027582	ENSMUSG00000025955	Akr1cl	4921521F21Rik|AI451536|AI503553	aldo-keto reductase family 1, member C-like	protein-coding	5.16883914799185	5.63364976963788	5.69581818632261	5.26677070743492	5.7270872828739	5.576719008036	5.48838897745419	5.71543909340322	0.315326552798003	0.274460237244702	0.586238303530207
Merged-chr10-12612630-3	chr10	12612543	12612743	+	930.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 50 of 73)	intron (NM_011682, intron 50 of 73)	249092.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	4.12535551318361	4.28167953448433	4.02150200582238	4.61637250505203	4.26197566168034	4.19970319984591	4.66271615497983	4.17274168365384	0.0911444054942354	0.834243373596889	0.936750419455008
Merged-chr2-153609798-4	chr2	153609747	153609947	+	944.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22934.0	NM_001195390	99311.0	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding	4.80473293700165	4.33344054226026	4.22907184093384	4.60520945032448	3.96614340854131	4.45187229822994	4.30354661346321	4.36446310931001	-0.569584950990401	0.169075723582549	0.46161486940974
Merged-chr8-79711745-4	chr8	79711629	79711829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357235)	promoter-TSS (NM_001357235)	11.0	NM_015751	24015.0	Mm.5831	NM_015751	ENSMUSG00000058355	Abce1	C79080|Oabp|RLI|RNS41|RNS4I|Rnaseli	ATP-binding cassette, sub-family E (OABP), member 1	protein-coding	7.8756529407313	7.90270288599325	7.84728853917518	7.80534135213522	7.95609459982622	7.92310700486856	7.99023593319098	7.82689601020685	0.0921926083429777	0.558398081832947	0.803138364227774
Merged-chr17-5728343-4	chr17	5728237	5728437	+	926.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 7 of 8)	MTC|LTR|ERVL-MaLR	-70320.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	4.66713011508878	4.92118424639891	5.15583336875451	5.43123075880292	5.3502791243214	4.8038676508609	5.13042223143107	5.18308630700381	0.0848531419709694	0.813290257881943	0.927857767644014
Merged-chr8-70868714-4	chr8	70868615	70868815	+	954.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026964, intron 4 of 4)	CpG	4775.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	5.44767406340951	5.76504345600389	5.12135146977761	5.75827404886005	4.89147717679154	4.95681081377114	4.79467755263415	4.93629061233788	-1.24611031420664	0.000125585469397186	0.00245578245225887
Merged-chr8-126548020-4	chr8	126547903	126548103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45433.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	6.79281309279558	6.85461765447016	6.9649811088501	6.9130423793723	6.49250888371015	6.52031585927661	7.09031249695536	6.73153810587984	-0.221590278411569	0.319941853629247	0.631766330519035
Merged-chr18-36793864-4	chr18	36793786	36793986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025594)	promoter-TSS (NM_025594)	-37.0	NM_025594	66492.0	Mm.251155	NM_025594	ENSMUSG00000001383	Zmat2	2610510D14Rik|2900082I05Rik	zinc finger, matrin type 2	protein-coding	7.59204892900308	7.58373233467132	7.13873005301387	7.58463927296908	7.83263443442751	7.66210899797615	7.7478049044771	7.21794018603425	0.194272921823058	0.358355592498748	0.664376128941953
Merged-chr11-53931625-2	chr11	53931525	53931725	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39922.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	3.65744346871472	3.64650164671067	3.60615882281348	3.47227397143506	3.64276288479687	3.66820492302446	3.48288352687003	3.55025447464963	0.00141729481241309	0.997637541194644	0.999032258328017
Merged-chr2-167300313-7	chr2	167300219	167300419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019835, exon 9 of 9)	3' UTR (NM_019835, exon 9 of 9)	48859.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	4.04247553396701	4.19080553487447	4.38461197733187	4.63702058162235	3.97333058117792	3.553369041872	3.75836532513058	4.13487580267118	-1.22762562736884	0.0108946018068743	0.0839340688398646
Merged-chr10-54076462-7	chr10	54076374	54076574	+	985.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008548)	promoter-TSS (NM_008548)	552.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	4.55903585287221	4.69957011115487	5.05049073575636	5.15111506390799	4.94272909120501	5.02035030768323	5.02559751974271	4.55691186761783	-0.00405207711596442	0.991121193968859	0.996637924214303
Merged-chr3-52198179-4	chr3	52198089	52198289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70148.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	6.97881113971654	6.88089435322904	6.60772797111682	6.90101683940241	6.97596776730382	6.75194674118573	6.81480757488886	7.1801615791615	0.127045456569071	0.544532255260783	0.79532034222127
Merged-chr3-103848452-1	chr3	103848352	103848552	+	774.0	f1_c57bl6.idr	intron (NM_001142960, intron 3 of 3)	RLTR22_Mus|LTR|ERVK	-11343.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	2.68985481819938	2.37166220057884	2.63632225275806	2.18237000329386	2.31991936819221	2.20008473910425	2.24762857537373	2.09724658274145	-1.61327495647334	0.0563988411450925	0.248678257688567
Merged-chr4-25281925-4	chr4	25281861	25282061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355512)	promoter-TSS (NM_001355512)	-140.0	NM_001355512	67490.0	Mm.226295	NM_026194	ENSMUSG00000040359	Ufl1	1810074P20Rik|AI429228|Kiaa0776|Maxer|Rcad|mKIAA0776	UFM1 specific ligase 1	protein-coding	8.59906870577362	8.48559555594685	8.63658462257436	8.57319313588783	8.64872672118404	8.68783960727186	8.57012609845405	8.49971410709194	0.0383506968213068	0.792508103031093	0.919627897475503
Merged-chr5-122401452-2	chr5	122401352	122401552	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 2 of 6)	B3|SINE|B2	9574.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	3.18014880162049	2.96184897526855	2.92041717178259	2.89021269877333	3.5677253430214	3.23232862660589	3.33232815645642	3.23654069126315	1.43734255377782	0.0103325679564186	0.080868149070302
Merged-chr16-85099239-4	chr16	85099131	85099331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 3 of 15)	intron (NM_001198825, intron 3 of 15)	74476.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	6.41977472639893	6.72262483990366	6.71298739547588	7.13644287035476	6.29910225755662	6.26965929261614	6.77576841920228	6.67892072884008	-0.384491635868708	0.133628678219702	0.406998531750114
Merged-chr3-19084517-4	chr3	19084435	19084635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78560.0	NM_028840	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	4.33365340533617	4.06645749371224	4.89979019894495	4.76695113062729	4.61805477810462	4.30447603122193	5.11060147275269	5.10602408421883	0.551681348971231	0.216162821119705	0.522630891456504
Merged-chr11-118494758-3	chr11	118494643	118494843	+	803.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 13 of 14)	intron (NM_001024931, intron 13 of 14)	17911.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	4.0223628968914	3.81732236573459	3.78367530502154	4.17023927347959	3.80509531021305	3.90314599109444	3.47894504236317	3.781557151498	-0.624769600509229	0.188429010533793	0.486992724783917
Merged-chr2-160368689-2	chr2	160368589	160368789	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1624.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	2.93978859995669	2.84454583081508	2.8123708492107	2.85441503041312	3.09928955937305	3.0482144767933	2.92972874560783	2.9386916195308	0.631254285050444	0.27930289926083	0.591442460155378
Merged-chr17-37471874-2	chr17	37471774	37471974	+	997.4166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_4-LTR_MM|LTR|ERVK	5666.0	NM_146835	258832.0	Mm.377712	NM_146835	ENSMUSG00000029184	Olfr109	MOR250-1	olfactory receptor 109	protein-coding	2.9455036944069	2.79296090118484	3.56122642374397	2.55455640250966	3.18076763854698	3.13034011181553	3.24744194296056	3.51350363378776	0.928428135888602	0.181733818750094	0.478390065102424
Merged-chr3-123506996-4	chr3	123506998	123507198	+	988.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008939)	TTS (NM_008939)	968.0	NR_028573	100306957.0	Mm.260791	NR_028573	ENSMUSG00000092730	Snora24	ACA24	small nucleolar RNA, H/ACA box 24	snoRNA	3.33266971379005	3.37375624460874	3.6063933872404	3.31267847815258	3.40847147363918	3.3177974815832	3.68446090424862	3.55411518443471	0.314283231995477	0.539172417683763	0.791983989773924
Merged-chr5-139666678-4	chr5	139666564	139666764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69669.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	6.13128030501639	5.92831750121163	6.01247133750665	6.22379636616225	5.83642439573287	5.90869955927339	5.44452305571258	5.87570632758854	-0.490063779244098	0.0575359283535043	0.251742675453287
Merged-chr2-49381207-4	chr2	49381117	49381317	+	796.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70269.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	3.89990040098387	4.0070754705512	3.60850146655428	4.3565406959112	4.0823181016471	4.17221859993135	4.03142388084401	3.99892640883684	0.144166877392602	0.760486554996474	0.906130030835837
Merged-chr5-20256762-4	chr5	20256625	20256825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 6 of 22)	intron (NM_001170746, intron 6 of 22)	349207.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	5.6428588291543	5.51713756126647	5.61777989776384	6.13022969531853	5.60776796641626	5.43450378335887	5.64070778003652	5.56008231017573	-0.349489923843701	0.232467304259644	0.542055632899732
Merged-chr5-91961568-4	chr5	91961463	91961663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073442, intron 1 of 9)	intron (NR_073442, intron 1 of 9)	993.0	NR_073442	68098.0	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	6.59234596301636	6.23717430260514	6.01824234641434	6.01599073558535	6.58568208143665	6.67590612988554	6.43517328271438	6.26834949037713	0.410872508619443	0.0980153894759854	0.343090300315972
Merged-chr15-99392867-4	chr15	99392760	99392960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026669)	promoter-TSS (NM_026669)	-87.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	8.05907362041661	8.38015238049867	7.81155729644935	7.85910690440612	8.33864710912071	8.18387311802645	8.42079209799871	8.32268400076896	0.350623080103839	0.0597683018007598	0.257833209325835
Merged-chr7-12781147-2	chr7	12781047	12781247	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5489.0	NM_001017955	232875.0	Mm.333573	NM_001017955	ENSMUSG00000070822	Zscan18	EG232875	zinc finger and SCAN domain containing 18	protein-coding	3.1599330392678	3.2379593949244	3.16033720830297	3.0734071173816	3.22156257159725	3.0135338536496	3.14864952513865	3.09991102198826	-0.10531551081466	0.849617553384177	0.943176062710257
Merged-chr6-86793652-4	chr6	86793593	86793793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013471)	promoter-TSS (NM_013471)	-109.0	NM_013471	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	6.14999175646486	6.28186159948896	6.07248138383754	5.87464913780974	6.01908716971365	5.87538206792478	5.55562410571903	5.91761923048715	-0.368907963018015	0.1584188644317	0.445250528810519
Merged-chr16-38712154-4	chr16	38712092	38712292	+	834.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	843.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	3.55159285739333	3.37249213636945	3.42810598812717	3.45742950370059	3.72533548154129	3.78662393598807	3.75367733955443	4.3254027092867	1.40068863658744	0.00453812233739633	0.0441960535708549
Merged-chr5-90892494-1	chr5	90892394	90892594	+	615.0	f1_c57bl6.idr	intron (NM_008176, intron 3 of 3)	intron (NM_008176, intron 3 of 3)	1249.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	2.88428313962043	3.3934262625894	3.00242841971976	2.30627740228766	2.73420383570694	2.72313836858233	2.60515657865038	2.61171597169161	-1.30832715981585	0.0952362852088815	0.337759020671797
Merged-chr8-31121094-4	chr8	31120948	31121148	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175136, intron 2 of 5)	intron (NM_175136, intron 2 of 5)	9202.0	NM_175136	68867.0	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	3.56263332679853	3.33748192672808	3.61461684331253	3.5859947437058	3.6532448312713	3.31359481489115	3.38328612334122	3.79732241786789	0.0851670181082701	0.869072766794745	0.950890741040292
Merged-chr11-83424893-2	chr11	83424793	83424993	+	843.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013759, intron 4 of 5)	intron (NM_001013759, intron 4 of 5)	4628.0	NM_001013759	237891.0	Mm.340523	NM_001013759	ENSMUSG00000020686	Gas2l2	-	growth arrest-specific 2 like 2	protein-coding	3.32452769999939	3.37422399385802	2.88559178509102	3.09184851266613	3.38148140268782	3.20204953487339	3.14312696241245	3.26878217010527	0.279993087676743	0.625849414107226	0.840127910575481
Merged-chr6-65137934-4	chr6	65137817	65138017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 2 of 5)	intron (NM_019455, intron 2 of 5)	6813.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	5.71032851524555	5.46862234206556	5.85962419832674	6.15418900339227	5.80746376534884	5.86168148338378	6.06183418423353	6.02928807053232	0.157672869207509	0.573923271614861	0.811973307930812
Merged-chr6-97877608-3	chr6	97877504	97877704	+	832.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	-52213.0	NM_001178049	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	3.39472089900258	3.07339299098701	3.1402020832512	3.4211793469595	2.63659389835539	2.93033340434661	2.81401319235659	2.89069019060563	-2.11353562640032	0.0016636787977346	0.020251458832217
Merged-chr7-99136375-3	chr7	99136260	99136460	+	723.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	MER21C|LTR|ERVL	4784.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	3.32229135935172	3.13792363704	2.95134172729847	3.10988987110138	2.70632446255423	2.85902349707657	2.67216120440839	2.8206627687657	-1.75306261545438	0.00773329332054869	0.0655841874494621
Merged-chr4-135883419-3	chr4	135883332	135883532	+	884.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9586.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	3.84932609927746	3.70309926442244	3.94766627484678	3.6688400232525	3.99006681423381	3.86368756878227	3.8339345500322	4.07890139680637	0.461789244574207	0.294372894762885	0.606634274221694
Merged-chr17-63826967-4	chr17	63826880	63827080	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37001.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	5.24843468076776	5.37443336686081	5.59139895479476	5.80270670640773	4.89254220998402	5.2170982426663	5.65839314692741	5.48345124924755	-0.346864428922414	0.29732220279174	0.60941334041274
Merged-chr9-40191268-2	chr9	40191168	40191368	+	889.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1048.0	NR_153114	80902.0	Mm.132196	NM_030713	ENSMUSG00000025602	Zfp202	C130037E22Rik|Znf202	zinc finger protein 202	protein-coding	3.13902370656511	3.16361445804102	3.02191172282547	2.79523771181922	3.40509621215532	3.06826103840093	2.81536542950576	2.89152616672672	0.163675425581694	0.79714951265125	0.921521740444505
Merged-chr4-63897391-3	chr4	63897279	63897479	+	623.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36095.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	3.2179972127983	3.21531043988529	3.4415355154827	3.65227011669942	2.95387002148784	3.33038243465494	3.20700927338973	3.3329786866977	-0.721205674316476	0.213829655398243	0.519409344234163
Merged-chr7-88998095-4	chr7	88997993	88998193	+	868.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	340694.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	3.85201483707576	4.0538692279946	4.08307643412546	4.05191422507424	3.73834597331987	3.55613654875065	3.88565700519459	3.74525784787765	-0.803879657380389	0.0765537293129038	0.298969488574738
Merged-chr18-23912252-4	chr18	23912163	23912363	+	977.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42425.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	5.02937818963995	4.83192695532687	5.15239400991236	4.83594356185384	4.90294017619475	4.79512048695775	4.63926053354101	4.99432174085451	-0.231582273685065	0.486778848239699	0.7603696580653
Merged-chr11-21223754-4	chr11	21223662	21223862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15270.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	6.87421587031058	6.57726499847709	6.67563990322846	6.74768899645698	6.94521380871727	6.75654119441354	6.82735268406726	6.94724591077589	0.215982498626437	0.278962777750266	0.591154591011528
Merged-chr19-12734216-4	chr19	12734099	12734299	+	917.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	31433.0	NM_170786	12803.0	Mm.290924	NM_053007	ENSMUSG00000079415	Cntf	AI429687	ciliary neurotrophic factor	protein-coding	4.21537350774338	4.09520161942269	3.9368702393244	4.80065056194049	4.67627071434203	4.34450981745395	4.87833354380752	4.60254677762848	0.689738210139703	0.134651720624687	0.408489696527381
Merged-chr7-63939601-2	chr7	63939501	63939701	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021366)	promoter-TSS (NM_021366)	-686.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	5.25468751905011	5.88775225517042	5.92704720668655	5.92403185700348	5.87406837293092	5.96437198682267	5.95994442372032	5.71034567799274	0.148184400702161	0.596511803759561	0.824763084775344
Merged-chr8-104233181-4	chr8	104233103	104233303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 5 of 8)	intron (NR_045642, intron 5 of 8)	15355.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	6.45107533323273	6.31709542797687	7.02133087577	7.16325984674858	6.38449943653669	6.17320382750606	6.29044063882526	6.67209375420362	-0.585593806099868	0.0341908460883991	0.182612008233373
Merged-chr7-127022227-2	chr7	127022127	127022327	+	868.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010772)	TTS (NM_010772)	-1016.0	NM_001102563	69017.0	Mm.392047	NM_001102563	ENSMUSG00000045114	Prrt2	1500031I19Rik|AI195361|DSPB3	proline-rich transmembrane protein 2	protein-coding	3.10927407739196	3.00575925134342	3.48627478387626	2.79986217402099	3.17326072807023	3.22269376431662	3.37443480116795	3.04430095372058	0.350579973815997	0.564056220645387	0.806570732819143
Merged-chr7-135706004-4	chr7	135705910	135706110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081117, intron 6 of 13)	intron (NM_001081117, intron 6 of 13)	10369.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	6.29139864235203	6.70437352228789	6.40410961978024	6.42445158579662	6.74112802239852	6.28301575439559	6.76339170301082	6.12221784662258	0.0743829295217059	0.768366981079586	0.909356419531329
Merged-chr13-9082356-4	chr13	9082269	9082469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11512.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	7.07224920283233	7.1689459694345	6.90711667473763	7.14731446878547	7.2760538481266	7.1506775003154	7.07318637467418	6.86053453224631	0.0296568305273487	0.880868387925539	0.955289696285915
Merged-chr9-25532335-4	chr9	25532211	25532411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	50714.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	5.89129715107637	5.73716250647383	6.15962505931513	6.33852494322464	5.53753270728528	5.89774553538852	5.81589345678092	5.76815249646403	-0.505282761906538	0.0667352370981212	0.275434735092611
Merged-chr14-99047032-2	chr14	99046932	99047132	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175245)	promoter-TSS (NM_175245)	655.0	NM_175265	77744.0	Mm.23503	NM_175265	ENSMUSG00000022070	Bora	6720463M24Rik|AI317232	bora, aurora kinase A activator	protein-coding	3.40626103579578	3.38772500882621	3.2218878991636	3.54602627722123	3.70516244817495	3.46064223964702	3.39413515491488	3.61595543447337	0.491144407494492	0.341500654271976	0.650546636435835
Merged-chr8-35400593-4	chr8	35400486	35400686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24845.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	5.77032560599694	6.31272544211608	5.99513649997076	5.71744964020233	6.28872642807729	6.1949369516635	6.5935205345052	6.42944421165979	0.645097706125963	0.0127948902942637	0.0940931394002891
Merged-chr1-191821447-4	chr1	191821344	191821544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010892)	promoter-TSS (NM_010892)	-29.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	7.28386229022854	7.04536967071178	6.75533160636651	7.20046618024962	7.44946352071807	7.64765689518235	7.44297267507832	7.40051872877014	0.529863273704966	0.00754034574863974	0.0643696653924716
Merged-chr1-84946210-4	chr1	84946090	84946290	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11107.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	5.47708409136465	5.0949911316581	5.15408740754794	5.45031779584676	5.16855216334046	5.15293707234867	5.12899309566785	5.57380090922526	-0.0838708785413138	0.787337417265203	0.917510601855574
Merged-chr6-29211982-3	chr6	29211865	29212065	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302934, intron 2 of 14)	CpG	332.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	5.23878924391161	5.03377100390368	5.59702183418888	5.50661310436813	5.85087416817197	5.41875262414456	5.94429895202072	5.69277368859388	0.640860719722062	0.0324171830028843	0.176274610205639
Merged-chr8-83698457-4	chr8	83698299	83698499	+	952.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177262, intron 1 of 21)	intron (NM_177262, intron 1 of 21)	780.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	5.10160820329322	4.84420142494012	4.45317646349937	4.80762374022645	4.78421075393897	4.62889474397769	4.56578369787461	4.88606972987801	-0.200533989572396	0.576780569174773	0.813753228544353
Merged-chr3-127568975-2	chr3	127568871	127569071	+	748.083374	f0_c57.idr|f1_c57bl6.idr	intron (NM_197997, intron 7 of 25)	MTC|LTR|ERVL-MaLR	15482.0	NM_197997	71643.0	Mm.274884	NM_197997	ENSMUSG00000051278	Zgrf1	4930422G04Rik|AI448607	zinc finger, GRF-type containing 1	protein-coding	3.20623803138028	2.96697519061824	2.97181278333265	2.6868034992641	4.11783944913181	3.82041280974616	3.90720061545175	4.15792195055874	4.05996790152539	3.68492923479078e-12	3.5831909563275e-10
Merged-chr2-155405885-4	chr2	155405783	155405983	+	857.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019825, exon 10 of 14)	exon (NM_019825, exon 10 of 14)	24027.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	3.80159616253177	4.08302089958449	4.16734798275643	4.57371338400441	4.29728099799143	3.97720451675331	4.2377212162793	4.48652291976679	0.139804953849155	0.764185807211949	0.907549538192029
Merged-chr2-119896856-1	chr2	119896756	119896956	+	1000.0	f0_c57.idr	promoter-TSS (NM_001164274)	promoter-TSS (NM_001164274)	-372.0	NM_001164274	29808.0	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	5.38183554631581	5.97791866744882	4.77246095933164	4.97971255194016	5.27016802068191	5.69133283348335	5.13934492287576	5.19471554326582	-0.0411082859837197	0.916146254331718	0.968918528564949
Merged-chr4-45011728-4	chr4	45011622	45011822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001163284, exon 1 of 2)	5' UTR (NM_001163284, exon 1 of 2)	690.0	NM_001163284	230119.0	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	6.43597806529626	6.64426967746247	5.97682851230076	6.36595761476476	6.94576118519786	6.61380732218669	6.77879929417557	6.34158847315202	0.45915068117203	0.067907313412112	0.278113074047863
Merged-chr4-115000005-4	chr4	114999902	115000102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009185)	promoter-TSS (NM_009185)	-116.0	NM_001304559	20460.0	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	8.54282937479837	8.71954622911621	8.49347941362772	8.67317578711591	9.01492490801686	9.15481841601784	9.22327875676851	8.75687034405169	0.542584396978432	0.00100771840726059	0.0135285530951341
Merged-chr2-24297036-3	chr2	24296936	24297136	+	693.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5840.0	NM_153077	215274.0	Mm.218750	NM_153077	ENSMUSG00000046845	Il1f10	-	interleukin 1 family, member 10	protein-coding	3.81928841290026	3.93086806022541	3.45669332790312	3.8113565045153	3.93991945726082	4.13983912511213	4.08527984718201	4.01373044054049	0.75062895239126	0.0965200203415792	0.340395309314436
Merged-chr19-40679833-4	chr19	40679725	40679925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	Lx5|LINE|L1	20055.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	5.54743419043018	5.82758828828694	5.22499209499064	5.17259057286712	5.53556083040271	5.43455180043962	5.38446429774931	5.28658048993293	-0.0780696351385414	0.801548709542673	0.923463720768799
Merged-chr11-46808452-4	chr11	46808387	46808587	+	831.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2312.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	3.74299787817809	4.09659547731916	3.74351878382505	3.66971866709163	4.10761290578857	3.86299597754051	3.50042789109916	3.57227224451079	-0.0792539998780656	0.875181004058147	0.95304713758329
Merged-chr9-90251233-4	chr9	90251148	90251348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	19521.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	6.72429946247408	6.47215117900529	6.79293592020815	6.85904306480036	6.33949522778321	6.3564628785146	6.10320602378093	6.27634384522193	-0.66247772070073	0.00291672447105107	0.0312712051701979
Merged-chr1-72307536-4	chr1	72307448	72307648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009533, exon 1 of 21)	exon (NM_009533, exon 1 of 21)	127.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	6.00624053433463	6.16620417194461	6.53633902028351	6.40637486050664	6.27127874833759	6.33847751089208	6.42372810398596	6.4188727497601	0.0891766602283106	0.703903400128938	0.880925455128412
Merged-chr3-146058414-4	chr3	146058333	146058533	+	968.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172864, intron 16 of 22)	intron (NM_172864, intron 16 of 22)	49603.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	4.93100230946837	4.8900017417762	4.96598301063297	5.05715551079276	4.90454570205221	4.70817111980853	4.72382892627539	5.02821246483736	-0.235564972605468	0.467919767264598	0.747218263768025
Merged-chr9-32508885-4	chr9	32508786	32508986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	32566.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	6.70238719432446	6.83412627830826	7.14626741495641	7.12355170404168	6.81097669619091	6.76746226791175	7.14271134026481	6.96493381898581	-0.0626531803630839	0.771134404781166	0.91036734532567
Merged-chr11-78114840-3	chr11	78114738	78114938	+	708.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145430, intron 1 of 2)	intron (NM_145430, intron 1 of 2)	20165.0	NM_145430	216971.0	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	3.11083636983296	3.28268270009606	3.11116840203582	3.26426497958016	3.48637944205958	3.46880642478718	3.28588299764213	3.5577375665455	0.892352410584671	0.0913236036125233	0.330233833648435
Merged-chr7-118802923-3	chr7	118802825	118803025	+	847.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 21 of 30)	intron (NM_027815, intron 21 of 30)	52688.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	3.59728928755439	3.7025449282909	3.59774571518392	3.82524673892652	3.78592645332679	3.77007734396759	3.88322483065357	3.70473299521895	0.271975497505782	0.555085472259758	0.80121730233361
Merged-chr17-45557546-4	chr17	45557440	45557640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008690, intron 1 of 5)	intron (NM_008690, intron 1 of 5)	1840.0	NM_001304956	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	6.48084585934167	6.73859764964474	6.41333613129787	5.58867424242347	6.63994525728392	6.82903786886547	6.6480560628134	6.19825217051485	0.344940925589179	0.258527986726097	0.570402763930965
Merged-chr16-23927923-1	chr16	23927823	23928023	+	647.5	f0_balb.idr	intron (NM_001008230, intron 1 of 1)	intron (NM_001008230, intron 1 of 1)	2871.0	NM_001008230	224055.0	Mm.39248	NM_001008230	ENSMUSG00000047531	Rtp2	Gm605	receptor transporter protein 2	protein-coding	2.84675200504171	3.15955818021882	3.09205831433096	2.9942370338857	2.7713338866563	3.02073193979124	2.96475551020498	2.97384649700801	-0.418867203745105	0.486795055271836	0.7603696580653
Merged-chr12-3427578-5	chr12	3427469	3427669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030694)	promoter-TSS (NR_030694)	712.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	5.63372408966719	5.84536068020281	5.2821867083668	5.57816757846934	6.10158751402466	6.04148107493849	6.32959939563375	6.25954101262432	0.92912068694906	0.000346303280264181	0.00569931125686108
Merged-chr14-63122645-4	chr14	63122522	63122722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	CpG	160.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	8.17210340078609	8.25287066251716	8.33004838138019	8.22861527957887	8.19571909910376	8.39944889518787	8.43959287185142	8.41397454890119	0.146567040971717	0.343308581473409	0.652001428018244
Merged-chr19-10678685-3	chr19	10678596	10678796	+	859.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021453)	promoter-TSS (NM_021453)	-625.0	NM_021453	58803.0	Mm.34037	NM_021453	ENSMUSG00000024738	Pga5	1110035E17Rik|Pepf	pepsinogen 5, group I	protein-coding	3.41647059298581	3.37224042212188	3.25521621753603	3.38395058789976	3.25167832718298	3.11004343149236	3.12453856971611	3.19484033490695	-0.696364283372768	0.199098354062996	0.500923323454455
Merged-chr2-167320559-2	chr2	167320459	167320659	+	986.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	28619.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	2.72899882739499	3.05115715432402	2.87127253792576	2.93241660042987	3.1564335640809	3.22767564280687	2.98904939227005	3.11488340951066	0.902008744849314	0.127315704254586	0.396985962533672
Merged-chr1-135544975-4	chr1	135544876	135545076	+	959.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 1 of 28)	intron (NM_173437, intron 1 of 28)	40379.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	4.75746793003843	4.64727197003275	4.75824592336422	4.90822999037135	4.72531587329418	4.77595491707399	4.66077699699326	4.46831668382743	-0.246707132774594	0.473901240442034	0.751432755478359
Merged-chr18-77047375-4	chr18	77047259	77047459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027721)	promoter-TSS (NM_027721)	-63.0	NM_027721	71206.0	Mm.35803	NM_027721	ENSMUSG00000025420	Katnal2	3110023G01Rik|4933439B08Rik	katanin p60 subunit A-like 2	protein-coding	7.44841627530613	7.43405081535723	7.37861905372373	7.74452042881506	7.85941067365005	7.63702615568615	7.84178537052334	7.7340059846686	0.330299525424224	0.070970193581183	0.285690951754045
Merged-chr10-121365463-3	chr10	121365344	121365544	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	CpG	354.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	5.75812103574719	6.05718326318552	5.80941523571526	5.60414642819447	6.12305033119852	5.98548742901117	6.06378192578124	5.98841831908123	0.381896743585295	0.128737572905274	0.399225012060494
Merged-chr2-122163941-4	chr2	122163848	122164048	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080510, intron 1 of 6)	intron (NM_080510, intron 1 of 6)	3248.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	5.34424744801584	5.01919110571384	5.31734504202902	5.10453125175095	5.05832346682575	4.98104571800768	5.17333064633559	5.34145063192907	-0.0933159587015629	0.761521159007801	0.906556667566817
Merged-chr19-4269212-3	chr19	4269128	4269328	+	983.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356620)	promoter-TSS (NM_001356620)	5.0	NM_001356620	245857.0	Mm.248388	NM_198113	ENSMUSG00000034616	Ssh3	SSH-3|SSH-3L	slingshot protein phosphatase 3	protein-coding	5.10564620692156	4.40386548407238	4.24281132350895	4.5568970091475	4.07791735493856	4.37268780095076	4.07450789827434	3.79342855471494	-1.25647179658863	0.00609757482222722	0.0549321957057728
Merged-chr6-97294249-4	chr6	97294168	97294368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 22 of 23)	intron (NM_145148, intron 22 of 23)	-41488.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	6.02209786446725	6.67856742210359	6.06649568863636	5.86770486229358	6.20642984755796	6.36344230794784	5.87777280638811	5.85453723965255	-0.153694881319064	0.599414057049446	0.826326054397818
Merged-chr1-173741831-4	chr1	173741727	173741927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204910)	promoter-TSS (NM_001204910)	-18.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	7.76916504748426	8.09772817159396	7.5042552247992	7.82043628448881	8.03250955078059	8.01791625826611	7.95818914369968	7.95050602099778	0.222287018771228	0.223690852681804	0.531783993154169
Merged-chr15-82126825-4	chr15	82126750	82126950	+	970.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310435)	TTS (NM_001310435)	-1072.0	NM_172428	76457.0	Mm.440373	NM_172428	ENSMUSG00000068114	Ccdc134	2310042L06Rik|AW208859	coiled-coil domain containing 134	protein-coding	5.42567679223327	5.08486665400858	5.1120020986662	5.75013767080602	5.89357849418687	5.77770387332253	6.29144285925644	6.00988134575246	1.00158625625146	0.00148857148738404	0.0185477481155312
Merged-chr17-23630418-3	chr17	23630322	23630522	+	950.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001320258, exon 10 of 10)	3' UTR (NM_001320258, exon 10 of 10)	14847.0	NM_001033339	240047.0	Mm.235343	NM_001033339	ENSMUSG00000023903	Mmp25	F730048C11Rik|Leukolysin|MMP20|MT6-MMP	matrix metallopeptidase 25	protein-coding	3.9261898358487	4.19414498771204	4.34684371975153	4.32315981635905	3.80583343851805	3.93433776607334	4.6067107572991	4.03016362689004	-0.202154113116849	0.664178638834984	0.860892763519835
Merged-chr7-100503536-5	chr7	100503427	100503627	+	802.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153527, intron 7 of 7)	intron (NM_153527, intron 7 of 7)	10169.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	3.4389309774137	3.83741822915396	3.49866682013804	3.41901974836009	3.69807576095902	3.55480152461082	3.42707719437314	3.89227037452489	0.313105318393727	0.537200647258251	0.790977285921248
Merged-chr2-102154969-4	chr2	102154876	102155076	+	997.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178886, intron 1 of 5)	Charlie19a|DNA|hAT-Charlie	31484.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	5.38570798514245	5.54891035751361	5.74705662980662	5.4113670038545	4.94843564313712	4.74485396104608	5.01160022384987	5.20370520130487	-0.992695455046442	0.00142383361408424	0.0179058397203007
Merged-chr9-40814852-3	chr9	40814735	40814935	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	13562.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	3.59035650437509	3.59246125327976	3.66307289071218	3.23086178435751	4.80884427057334	4.63534843606107	4.54833564577661	5.2581650031744	3.50222997418606	8.97705887083371e-15	1.40126770475235e-12
Merged-chr10-57795762-2	chr10	57795662	57795862	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020561, intron 1 of 7)	intron (NM_020561, intron 1 of 7)	1218.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	3.62486688733162	3.58135825021322	3.62537182125986	3.57716574263843	3.4253348636117	3.44232742538491	3.89192401330382	3.77343441359437	0.141842214601513	0.773362875667199	0.911332154480995
Merged-chr8-40424224-3	chr8	40424110	40424310	+	938.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178395, intron 1 of 12)	CpG	395.0	NM_001357249	70546.0	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik|DHHC-2	zinc finger, DHHC domain containing 2	protein-coding	3.93351990534301	4.41773770728425	4.45915617057026	4.25781512074423	3.45616664085002	3.57965706958317	3.58146941857293	3.6552797956876	-2.16109356877077	1.33670042163978e-05	0.00035809183030447
Merged-chr14-121423639-4	chr14	121423537	121423737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44407.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	6.690323874254	6.22105013808098	6.3638949789982	6.58447853111866	6.47882210816846	6.17222486887756	6.20052979384331	6.08131999755623	-0.340161966187257	0.159264774186703	0.446694248585648
Merged-chr5-115260511-4	chr5	115260412	115260612	+	991.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302449, intron 1 of 16)	intron (NM_001302449, intron 1 of 16)	12383.0	NM_001302448	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	5.31828307720476	5.56938552448899	5.80479033981154	6.38164857016148	5.05033164527171	5.08618570374242	5.8608968144676	5.46971154757139	-0.736076434371102	0.0477871667642792	0.225514999875
Merged-chr1-156680878-4	chr1	156680749	156680949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145413, exon 8 of 8)	3' UTR (NM_145413, exon 8 of 8)	-6510.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	7.43799663063601	7.43224934473291	7.80970116808084	7.9897653721248	5.7044160647501	5.68485078827085	6.04180332565593	6.09396115577619	-2.59331914351208	4.63198570955596e-26	3.2323540276518e-23
Merged-chr6-42340333-4	chr6	42340264	42340464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-9464.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	6.07093607922545	6.20247755534659	6.32868877937556	6.64045442666838	6.31598242054941	6.13552988540153	5.97400808362991	6.32415937971023	-0.222242792130562	0.380721046407651	0.683033229042222
Merged-chr5-140663136-6	chr5	140663053	140663253	+	786.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028833)	TTS (NM_028833)	-14122.0	NM_175274	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	3.89138182208226	3.888067663785	4.39047553887701	3.85233020079125	4.25639420372776	4.06992999715173	3.92991894800139	4.46014744193359	0.466071379949514	0.297436653106975	0.609560161565742
Merged-chr19-11465067-4	chr19	11465018	11465218	+	964.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4250.0	NM_001166376	73656.0	Mm.440719	NM_028595	ENSMUSG00000079419	Ms4a6c	2200009H22Rik|2210417N07Rik	membrane-spanning 4-domains, subfamily A, member 6C	protein-coding	5.28181383804606	5.28167976623833	4.79535204096087	4.17196131314852	5.25781106087945	5.01121400144076	4.69176309279291	4.9055259482557	0.0624073902072281	0.882906498316406	0.955866541594371
Merged-chr4-43563282-4	chr4	43563180	43563380	+	914.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011602)	promoter-TSS (NM_011602)	646.0	NM_013497	12913.0	Mm.12407	NM_013497	ENSMUSG00000028466	Creb3	AU044960|AW538053|C80076|LZIP|LZIP-1|LZIP-2|Luman	cAMP responsive element binding protein 3	protein-coding	4.08908042719026	4.01312421208886	4.35254554692178	3.92008120841328	4.42664752014743	4.11226086858054	4.07227579467834	4.26810850904871	0.369451247642114	0.376740286678115	0.679470857585302
Merged-chr14-46999870-4	chr14	46999766	46999966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-1474.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	6.09798446803803	6.01469616653664	5.99667399331034	6.39727814819501	6.04528239703611	5.55935852573591	5.59950457987874	5.75886335713543	-0.604620687416652	0.0264954225035518	0.154418871561477
Merged-chr17-88529015-4	chr17	88528920	88529120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-1104.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	6.21951694153588	5.74433674259689	5.85303610943229	5.96103919042701	6.16153460816978	5.85244007918605	5.7252994820617	5.77569187082708	-0.08185665374034	0.758616224174592	0.905219520105318
Merged-chr15-36325288-4	chr15	36325166	36325366	+	924.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR24B_MM|LTR|ERV1	-42119.0	NM_001357631	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	4.93455227712096	5.44230112296862	4.71199089799007	4.50313992753969	5.20353711255556	4.62530257513932	4.7295776622566	4.58108434976436	-0.247376802885223	0.549768040403027	0.798147832027397
Merged-chr9-57537725-6	chr9	57537642	57537842	+	885.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001166364, exon 1 of 5)	exon (NM_001166364, exon 1 of 5)	214.0	NM_001166364	78323.0	Mm.25814	NM_175273	ENSMUSG00000032305	Fam219b	2310046O06Rik|AI594866	family with sequence similarity 219, member B	protein-coding	4.60951787532352	4.44237575793348	4.78992852278426	3.93166715859082	4.73249003479508	4.6636193445542	4.23918657166046	4.71788990025444	0.304453987452429	0.477173444477849	0.753376001937689
Merged-chr13-41825737-3	chr13	41825639	41825839	+	911.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145875, intron 2 of 6)	intron (NM_001145875, intron 2 of 6)	21749.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	3.80024902812467	3.69617913842566	3.64671579917803	3.95085115302128	3.77976444095856	3.58610401715254	3.63273128409493	3.6981152142193	-0.329608354396216	0.483763596471504	0.758009278444276
Merged-chr18-39855891-3	chr18	39855792	39855992	+	744.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82395.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	3.92338869338422	3.68228351094919	3.97336327746313	4.34080813424605	4.01051235787379	3.8238367069155	4.09266399830375	3.9710194574627	-0.110796380619341	0.812599908854963	0.927652305694976
Merged-chr17-71504043-4	chr17	71503938	71504138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023294, intron 13 of 16)	intron (NM_023294, intron 13 of 16)	22819.0	NM_023294	67052.0	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	5.64497265002221	5.77447754002796	5.50115308762908	5.77698016439858	6.02182872439927	6.27409487972893	5.86395321560143	5.86713294568782	0.523435964211656	0.0429524995702472	0.210878463712969
Merged-chr2-25181135-1	chr2	25181035	25181235	+	650.0	f0_balb.idr	exon (NM_025980, exon 1 of 1)	exon (NM_025980, exon 1 of 1)	377.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	3.3286696733274	3.8863640593457	3.98196284479328	3.45435491923725	3.96416109745452	3.81534986051085	3.73251319693209	3.58240629133961	0.292801358105196	0.571927207013289	0.810956526384966
Merged-chr8-31981051-1	chr8	31980951	31981151	+	816.666687	f0_balb.idr	Intergenic	Intergenic	-62848.0	NM_178591	211323.0	Mm.153432	NM_178591	ENSMUSG00000062991	Nrg1	6030402G23Rik|ARIA|D230005F13Rik|GGF|GGFII|HRG|HRGalpha|Hgl|NDF|SMDF	neuregulin 1	protein-coding	3.09223442610985	3.28430572086464	3.44057097799056	3.2639546759339	2.53637386968682	2.72393762110554	2.76204037622092	2.69418626556419	-3.30036396678359	4.1908568010442e-05	0.000970715900558169
Merged-chr6-136716277-4	chr6	136716186	136716386	+	976.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145067, intron 18 of 25)	intron (NM_145067, intron 18 of 25)	-54393.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	5.34013572816464	5.39088532288028	5.00816497088022	5.47982899292573	6.20732122806227	5.52097535448388	5.72745171482631	6.26807642246974	1.07501370007945	0.00055630175820291	0.00840343863478882
Merged-chr15-89074182-4	chr15	89074076	89074276	+	868.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040417, exon 2 of 4)	non-coding (NR_040417, exon 2 of 4)	1678.0	NR_040417	69120.0	Mm.276391	NR_040417	ENSMUSG00000087331	1810021B22Rik	-	RIKEN cDNA 1810021B22 gene	ncRNA	3.86237536059493	4.2420492273143	3.63291416189904	3.80450067453806	4.2932660746105	3.92982242898453	4.084641304685	3.86073428384863	0.420282562243362	0.365743006863238	0.670406513516905
Merged-chr5-113842002-4	chr5	113841924	113842124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011779)	TTS (NM_011779)	-11523.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	6.31340008590007	6.53887316662825	6.06108328727745	6.02057578050447	6.15811869141862	6.19381406244227	5.79498245473644	6.19941230042473	-0.223283132835056	0.386677618587106	0.687773657189555
Merged-chr11-58307079-4	chr11	58306968	58307168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182996)	promoter-TSS (NM_182996)	-1.0	NM_182996	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	6.05192301465361	6.40638716923867	5.71706904964643	5.96866926084402	6.72942464295828	6.38074632149738	6.97511158044914	6.36884290857903	0.86475450657387	0.00122558241987658	0.0158293832452177
Merged-chr8-116243250-4	chr8	116243157	116243357	+	971.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-261758.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	4.82435707609358	4.6815553637451	5.37105473467013	5.26244817298111	4.81742070132089	4.66199715531116	4.76415163558202	4.85930161176911	-0.58828325377528	0.0999325791844258	0.346760642215582
Merged-chr2-164798761-3	chr2	164798647	164798847	+	962.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133240, intron 3 of 5)	B2_Mm2|SINE|B2	6134.0	NM_133240	170789.0	Mm.277878	NM_133240	ENSMUSG00000017307	Acot8	PTE-2|Pte1	acyl-CoA thioesterase 8	protein-coding	4.11031708352618	4.11414675253375	3.65398152055376	3.48273527105559	3.96948443968419	3.77407268684397	4.04899842319662	4.1083184003192	0.332468740765768	0.494347481366849	0.76502017164665
Merged-chr19-10946864-4	chr19	10946756	10946956	+	958.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023731, intron 1 of 3)	intron (NM_023731, intron 1 of 3)	2410.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	4.5725218892992	4.57378971238198	4.72186606797319	4.29899494131548	4.42781832164426	4.48906255390084	4.29328357476249	4.78675800492511	-0.0611075593786505	0.873242697474966	0.952473903024466
Merged-chr13-103893225-4	chr13	103893122	103893322	+	966.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	27364.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	4.89542850417015	4.64751517707909	4.59367564399254	4.893121977316	4.96929507159647	4.84937413039871	4.65462704685694	4.67305832029112	0.0566317787596768	0.869516475392267	0.951054729822361
Merged-chr4-88872833-2	chr4	88872733	88872933	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7368.0	NM_177348	230405.0	Mm.246593	NM_177348	ENSMUSG00000045364	Ifne	Ifn-tau-1|Ifne1|Ifnt1|Infe1	interferon epsilon	protein-coding	3.02888231426967	3.01201128895687	3.23095345991381	2.84336263418882	2.63542735774434	2.74709163711714	2.84048231055999	2.84859727845839	-1.258838403221	0.053853343486726	0.242256660307253
Merged-chr10-81296230-2	chr10	81296130	81296330	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	3267.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	2.0765148597371	2.23662147157982	2.15706364916648	2.09794595883919	2.44452634523393	2.60808931466801	2.42904073466833	2.49899345088797	2.19118861320921	0.0036943014565265	0.0376136008259333
Merged-chr16-30764342-4	chr16	30764244	30764444	+	846.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	164621.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	4.14219891544587	4.36671123712792	4.04580997532	3.98255879688229	4.16750015705397	4.21983656470311	4.25638185884552	4.14031122339282	0.153977573194347	0.704272129008016	0.881194811597198
Merged-chr17-15583276-3	chr17	15583164	15583364	+	821.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19941.0	NM_144809	213389.0	Mm.215162	NM_144809	ENSMUSG00000051977	Prdm9	BC012016|Dsbc1|G1-419-29|Meisetz|PRDM9-B|Rcr1|repro7	PR domain containing 9	protein-coding	3.44968247543974	3.96181698480004	3.60930666892546	3.8601116056013	3.00669835751003	3.3167471423173	3.19250204716171	3.20130329146164	-2.11248282854405	0.000298854640002235	0.00505537526777831
Merged-chr5-139017609-1	chr5	139017509	139017709	+	963.0	f0_c57.idr	3' UTR (NM_001253890, exon 11 of 11)	3' UTR (NM_001253890, exon 11 of 11)	-22656.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	4.65328694377877	4.61988422543214	4.53017586490415	4.32283882650168	4.62407904580322	4.865285326417	4.84678602960981	4.83373721494949	0.577576533820101	0.0988860632021684	0.344725785711977
Merged-chr2-117019729-1	chr2	117019629	117019829	+	983.0	f1_c57bl6.idr	Intergenic	Intergenic	-101342.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	3.84979691472899	4.27306140955282	3.85035621566441	3.50362394300879	3.96945249116135	4.16670378570747	3.83417610706083	3.49698180322727	-0.0182917165014522	0.971750244127948	0.989737326894157
Merged-chr7-130646933-4	chr7	130646839	130647039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004468, intron 3 of 21)	intron (NM_001004468, intron 3 of 21)	-45617.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	6.10097023567594	6.12720092464359	6.03341503746831	6.02698016192462	6.72166889246206	6.65998994637834	6.81760678753236	6.70491057411702	0.972825094981355	3.34967630384843e-06	0.000103799133492219
Merged-chr11-22809581-4	chr11	22809489	22809689	+	972.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50146.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	4.79641416059533	4.94975443459988	5.24774516518036	5.266454475888	4.67006399558829	4.93520525407461	5.33222030144613	5.45786536844802	0.0799378774864739	0.825391294114158	0.933089399990757
Merged-chr10-20763423-3	chr10	20763325	20763525	+	902.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38347.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	3.9854760005953	3.78142587705957	3.63624105369103	3.76100938360584	3.77108834018042	3.91767386792287	3.78227784490573	3.69038978559524	-0.00879744049925141	0.984514322264625	0.994316877108323
Merged-chr13-101906582-4	chr13	101906478	101906678	+	965.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138361.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	5.2408383184205	5.13162922720661	5.18086745417043	5.60008595950577	5.09102143597904	4.96122456681628	4.75971039829251	5.08023238239287	-0.634449116418723	0.0514290164710298	0.235548932719351
Merged-chr4-132030208-4	chr4	132030061	132030261	+	956.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	L1MC5|LINE|L1	18917.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	4.16014970193544	3.7381052830764	4.03124479797331	4.03492158678938	3.79660207732444	3.44272453730675	4.05753011654772	4.11645277985539	-0.330820544872102	0.497395249757618	0.767076255939255
Merged-chr3-94425943-3	chr3	94425848	94426048	+	652.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357713, exon 6 of 6)	exon (NM_001357713, exon 6 of 6)	10703.0	NM_016901	53814.0	Mm.440422	NM_016901	ENSMUSG00000028141	Oaz3	AZ3|Az-3|Oaz-t	ornithine decarboxylase antizyme 3	protein-coding	3.05292504898511	3.07950817996587	3.05334620327861	3.45108011708277	2.77296522086205	2.77022960469261	2.5826944702862	2.66413572010283	-2.33147541289516	0.00125827102026535	0.0161811152577176
Merged-chr5-87056026-4	chr5	87055940	87056140	+	961.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_3-LTR_MM|LTR|ERVK	36515.0	NM_001029867	231396.0	Mm.439851	NM_001029867	ENSMUSG00000070704	Ugt2b36	-	UDP glucuronosyltransferase 2 family, polypeptide B36	protein-coding	4.7797112684322	4.83794883872459	5.43076684717841	4.94693275733106	4.72892475243946	4.78947997350287	4.87288709034081	5.37766533284885	-0.10648265752837	0.772512524314622	0.910940763350478
Merged-chr4-3795255-7	chr4	3795117	3795317	+	929.857117	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	40438.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	2.90070768524417	2.68360382227718	3.72017170375843	2.88105397169183	2.81222290761566	3.27558422473733	3.02472715911068	3.15711655323149	-0.125566751931004	0.859363626549348	0.946751127151883
Merged-chr2-43921581-3	chr2	43921475	43921675	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 6 of 14)	intron (NM_001301831, intron 6 of 14)	143749.0	NR_040622	320872.0	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	3.56992371238027	3.39158698702093	3.57039485023045	3.50561511335962	4.01848323929483	3.68958419943632	4.28726147711531	3.56848929643065	1.23220510896926	0.0129278504744277	0.0946802425430535
Merged-chr18-61078021-2	chr18	61077921	61078121	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 16 of 22)	intron (NM_008809, intron 16 of 22)	-27551.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	2.25526472682356	2.25837556967874	2.32827506140678	2.00725273436471	2.32199013706696	2.50435065154932	2.45340723198942	2.64056192253256	1.68481483655336	0.0272970282215412	0.157427902429191
Merged-chr9-99107847-4	chr9	99107767	99107967	+	970.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	32344.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	5.09333133546846	4.9164463617856	4.99894954730248	4.69458091196883	4.92084691388322	4.55970996861845	5.15672900115074	4.85637320339579	-0.0503608600456471	0.884503713172604	0.95662087733294
Merged-chr4-152152002-2	chr4	152151902	152152102	+	879.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_207687, exon 1 of 16)	exon (NM_207687, exon 1 of 16)	205.0	NM_207687	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	3.40687167064771	3.6941757687521	3.40728492062571	3.65856246207055	3.66511155310685	3.32523598314747	3.5084243365083	3.72216044847008	0.0374520480118836	0.941514945534732	0.978923038727073
Merged-chr16-33751748-4	chr16	33751646	33751846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 12 of 14)	intron (NM_175256, intron 12 of 14)	-42291.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	7.56053859759168	7.70386566371896	7.71094883358884	7.97070621870828	7.26274449320606	7.26422848543394	7.2400985729553	7.20325488377053	-0.682821175018538	0.000194114686131196	0.00354697113215724
Merged-chr15-86167288-3	chr15	86167216	86167416	+	812.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-18412.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	3.47044420032427	3.38914441481986	3.36118447228036	3.47134229730154	3.43668466101904	3.35202598479041	3.2911964473	3.46898815027176	-0.124700845881643	0.805437072821993	0.925178766347246
Merged-chr9-118705755-4	chr9	118705638	118705838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	MTD|LTR|ERVL-MaLR	-5954.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.56619959189175	5.00084321642642	5.73033297601595	5.6887408607876	5.8881927760819	5.59536852411127	6.55177307394775	6.3085443071608	0.972915912281167	0.00339072859325066	0.0351461585174004
Merged-chr13-69535407-1	chr13	69535307	69535507	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-1543.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	4.44345593081647	4.38807275533907	4.44417401265165	4.67170180925788	4.09689827120507	3.91249497659978	3.95639173817018	4.51784351316916	-0.8654489066332	0.0407781973286297	0.204160604041256
Merged-chr14-50971046-3	chr14	50970905	50971105	+	839.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	14864.0	NM_001123371	667034.0	Mm.482171	NM_001123371	ENSMUSG00000068417	Pnp2	-	purine-nucleoside phosphorylase 2	protein-coding	3.61398176844691	3.33466464584931	3.66263908620987	3.54766843858013	3.47470128478499	3.57320709488331	3.13770043707858	3.34047217305795	-0.510574723626923	0.336169690400971	0.646244323954596
Merged-chr10-119055422-4	chr10	119055297	119055497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4898.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	6.84175460721372	6.77486557029549	6.52556493458102	6.85480808947563	6.91678255670126	6.39544560215076	6.97007413452241	6.57141953067636	-0.0243004603896331	0.915427149471977	0.968679408204232
Merged-chr6-42398469-4	chr6	42398391	42398591	+	743.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1747.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	4.28025334543803	4.10745077102018	4.49648662880539	5.02134217780096	4.24323497320133	4.09020860722852	4.16586072799096	4.71128058353248	-0.492595393603085	0.289940694965708	0.602015364982472
Merged-chr13-119327068-4	chr13	119326959	119327159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2F|LTR|ERVL	81952.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	5.5494152986511	5.55704363549465	6.02356412458737	6.11493462051736	5.60701182700753	5.40838863563333	5.86916356417231	5.82809543240184	-0.263395358434032	0.371336919967298	0.675407334449643
Merged-chr10-88379160-4	chr10	88379101	88379301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004164)	promoter-TSS (NM_001004164)	-211.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	7.27602870062916	7.33023417785515	7.42616968183387	7.35648940411067	7.29095271953186	7.18546447502118	7.37053792743925	6.75872927997782	-0.23267914521797	0.250902856165628	0.562187628640201
Merged-chr15-80948430-4	chr15	80948308	80948508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009634)	promoter-TSS (NM_009634)	-82.0	NM_009634	11564.0	Mm.38151	NM_009634	ENSMUSG00000022407	Adsl	Adl|Asl	adenylosuccinate lyase	protein-coding	5.1695488253625	5.24648051049201	5.32060156867188	5.25916712750786	4.93774020590156	5.21127744658011	5.17632322254041	5.06753471939254	-0.295565263123165	0.319943879428845	0.631766330519035
Merged-chr1-124103208-3	chr1	124103108	124103308	+	586.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-57649.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	3.71294274553306	3.56012816313823	3.4619833902277	3.36036376376529	3.3896228151354	3.18865814872664	3.65093025375547	3.40336910865828	-0.350849819478432	0.506656569202976	0.772382009914734
Merged-chr11-4194877-4	chr11	4194810	4195010	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	8077.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	3.67368588138044	3.4383534887473	3.387972714813	3.48265202858922	3.54555980331468	3.94096863758915	3.70863027283905	3.72238867409046	0.728247160050362	0.132156719185942	0.404697260150412
Merged-chr11-9117991-4	chr11	9117890	9118090	+	716.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159402)	promoter-TSS (NM_001159402)	-18.0	NM_001159401	22271.0	Mm.4610	NM_009477	ENSMUSG00000020407	Upp1	AI325217|UPase|UdRPase|Up|Upp	uridine phosphorylase 1	protein-coding	3.84922284745967	3.7051082697752	4.07819818954687	3.96809156852262	3.94254029233016	3.91758019929742	3.78337421293011	3.68796459763865	-0.196259526103786	0.663697553693499	0.86071931720076
Merged-chr3-87274551-4	chr3	87274443	87274643	+	753.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11019.0	NM_030707	80891.0	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	4.1959641075574	4.06486390041471	4.19660869560729	4.42204929216948	3.79158951097915	4.53510666369581	3.9312894302335	4.28164421405996	-0.187068395038257	0.679009618516834	0.86828280251531
Merged-chr2-156189429-3	chr2	156189310	156189510	+	745.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7237.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	3.44035541998786	3.30491129798523	3.1698991552255	3.39042196454746	3.19661120919668	3.08283157018899	3.27258876969468	2.9739434575289	-0.740172011641977	0.189200106453109	0.488066531391588
Merged-chr9-25151343-1	chr9	25151243	25151443	+	1000.0	f0_c57.idr	5' UTR (NM_020586, exon 1 of 8)	5' UTR (NM_020586, exon 1 of 8)	438.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	5.76734464236829	6.26949809308941	6.62426364291321	5.93458081949704	6.00025952986294	6.23541887251185	5.96147912136833	6.44227814991083	-0.0199821961425294	0.94450712078952	0.980072204069348
Merged-chr2-143948169-4	chr2	143948046	143948246	+	987.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 23 of 23)	intron (NM_024281, intron 23 of 23)	32815.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	5.51625000543429	4.93196718188944	5.4650517160348	5.73811990462848	5.00738609875702	4.86933498728474	5.56302732841667	5.3205770435667	-0.427077216297922	0.2248053685154	0.533254215616452
Merged-chr9-120492177-2	chr9	120492077	120492277	+	788.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026892)	promoter-TSS (NM_026892)	-429.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	3.16737885886282	2.95016853301273	3.16781309979258	2.88179789385991	3.11697072586683	2.88570594446657	3.09863831681261	3.32393665927417	0.312455315765512	0.595700109334394	0.824111519487797
Merged-chr7-24978943-4	chr7	24978836	24979036	+	935.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290469, exon 22 of 23)	exon (NM_001290469, exon 22 of 23)	-6208.0	NM_010261	14470.0	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	4.8875875715924	4.7327302899427	4.74057089048271	4.979692362203	4.57504524185849	4.46138616281176	5.2228294695205	4.95294021720007	-0.0205405260727621	0.95578272085711	0.984292813605202
Merged-chr4-124851236-4	chr4	124851133	124851333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142727)	promoter-TSS (NM_001142727)	474.0	NM_153566	230734.0	Mm.258568	NM_153566	ENSMUSG00000028889	Yrdc	AV303379|BC023823|IRIP|ITIP	yrdC domain containing (E.coli)	protein-coding	6.55088824267562	6.49104013131068	6.16221460867499	6.37758400502881	6.37913958871987	6.31816102203533	6.24894444879123	6.049560962136	-0.214587178825638	0.351592869960935	0.658910409408162
Merged-chr15-67355510-2	chr15	67355396	67355596	+	687.5	f0_balb.idr|f1_balb.idr	intron (NR_045140, intron 7 of 8)	MIR|SINE|MIR	128727.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	3.40195056234411	3.36580890859259	3.45484537275818	3.72131988002627	2.8779797716302	3.28019668177797	3.21950238700027	3.16696565136716	-1.4001440642386	0.0170031733016572	0.114608794738509
Merged-chr19-41264071-4	chr19	41263944	41264144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133352)	promoter-TSS (NM_133352)	-40.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	7.16473306473619	7.01352686448364	6.94551112996466	7.09142062597182	7.09676515275454	7.53916819532262	7.1187656190938	7.00579180213449	0.196889957635441	0.334751288594306	0.645195401969802
Merged-chr11-99043154-4	chr11	99043048	99043248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010517, intron 1 of 3)	intron (NM_010517, intron 1 of 3)	1904.0	NM_010517	16010.0	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IBP-4|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	4.89683230960491	4.89731178510635	5.03637710936043	5.20446977405668	5.09647577910495	4.79160814143846	4.63572650110649	5.21580777032008	-0.125498555738329	0.713606849347167	0.885457948749053
Merged-chr8-104442943-4	chr8	104442829	104443029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001013380, exon 1 of 13)	5' UTR (NM_001013380, exon 1 of 13)	118.0	NM_001013380	234663.0	Mm.289583	NM_001013380	ENSMUSG00000035770	Dync1li2	AA409702|C920003I06|Dncli2|Dnclic2|LIC2	dynein, cytoplasmic 1 light intermediate chain 2	protein-coding	6.48118717397714	6.38380158103497	7.01616674626825	6.41517050114532	6.21922693903909	6.39611692862387	6.57816030170143	6.86997357522317	-0.0866767437261029	0.741285822525978	0.898139463026673
Merged-chr2-132686966-4	chr2	132686871	132687071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358260)	promoter-TSS (NM_001358260)	40.0	NM_001358260	73747.0	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	6.86003461720987	6.58706935590016	6.60322654289047	6.53534196804058	6.52684165650705	6.69792534868703	6.55358705528147	6.94387010939545	0.0596460554200456	0.785606765209131	0.916584329747337
Merged-chr2-73561775-4	chr2	73561645	73561845	+	873.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18593.0	NM_007389	11435.0	Mm.4583	NM_007389	ENSMUSG00000027107	Chrna1	AI385656|AI608266|Achr-1|Acra	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	protein-coding	4.11918443539263	4.06779217575931	3.69333328811906	3.82441637016351	4.21441739208515	4.33429079598684	4.22969076278802	3.97323808313396	0.68868226063238	0.107606443837024	0.361732329292372
Merged-chr9-64774528-4	chr9	64774418	64774618	+	925.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36493.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	5.26411224868125	5.12445285448956	5.55210954356219	5.66104673830922	4.48150095137206	4.72324161692583	4.94516889286839	5.17021697982685	-1.10812536487983	0.00167034543210058	0.0203124113667918
Merged-chr2-75698249-4	chr2	75698129	75698329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	6434.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	6.56554160030768	6.28519006752713	6.45260174582857	6.19716926778646	6.5960394853265	6.52228519828199	6.59367931291067	6.43082068021025	0.254802098128418	0.246167416236022	0.557438059372755
Merged-chr11-52283399-3	chr11	52283294	52283494	+	724.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313981)	promoter-TSS (NM_001313981)	-380.0	NM_001313981	21414.0	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	3.75265855831003	3.46744364535481	3.41851926487542	3.45866738953651	3.87773412072356	3.76923445826341	3.68768090242816	3.79912029412601	0.816536056482525	0.0823055720938931	0.311452861035153
Merged-chr2-5579597-4	chr2	5579507	5579707	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	96439.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	5.123442706099	5.71731422576396	5.0909761599682	5.11543167015472	5.03131611774241	5.16197771402441	5.09919179887263	4.82672342704762	-0.478171639615999	0.154607570112463	0.439875778760694
Merged-chr9-87255496-4	chr9	87255410	87255610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199316)	promoter-TSS (NM_199316)	22.0	NM_199316	382090.0	Mm.335338	NM_199316	ENSMUSG00000056919	Cep162	4922501C03Rik|mKIAA1009	centrosomal protein 162	protein-coding	7.13836953497044	7.06221080388602	7.19682068375934	7.37547888289399	7.15589504040065	7.40643431270986	7.16081440915378	7.3687428460374	0.0875055225687059	0.648286918964253	0.852111879396461
Merged-chr6-145517161-2	chr6	145517057	145517257	+	711.166626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-82232.0	NM_028742	74071.0	Mm.441497	NM_028742	ENSMUSG00000054966	Lmntd1	4933403M22Rik|AI482300|Ifltd1|Lmna-rs1|Lmna1	lamin tail domain containing 1	protein-coding	3.23137487360625	3.2863676749534	3.48261174945696	3.8072932147665	2.65254851140838	2.71977597994331	2.7665728912247	2.69326308733527	-4.4564499098588	5.50214127677951e-06	0.000161566383638568
Merged-chr10-123057301-2	chr10	123057201	123057401	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163024, intron 2 of 34)	B2_Mm2|SINE|B2	19204.0	NM_001163024	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	2.53386496614381	2.46977432712986	2.3812625916259	2.56339644841448	3.06443362610896	2.77837873259855	2.8968213626526	2.73382697637307	1.87819501714452	0.0071738862651125	0.0620600450248471
Merged-chr3-55115017-4	chr3	55114908	55115108	+	876.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001144987, intron 1 of 8)	intron (NM_001144987, intron 1 of 8)	2842.0	NM_001144987	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	4.40018035180652	4.26390943238977	4.76199014341973	4.80746905341041	4.54863359678258	4.82375050877924	4.55293523600201	4.57109025641362	0.071381295472186	0.851513564716216	0.944007369647391
Merged-chr11-74547320-5	chr11	74547247	74547447	+	866.093323	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	42811.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	3.8439592915674	3.79189549444784	4.12734246025367	3.81106657540568	4.14028692340651	4.01776476033253	4.02201962301806	3.73258162571801	0.274005707106698	0.536418353526579	0.790399040287221
Merged-chr3-133542242-4	chr3	133542134	133542334	+	982.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040400, intron 1 of 10)	intron (NM_001040400, intron 1 of 10)	2156.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	4.81701567898791	5.3118600084464	4.68745535061599	5.08674512596711	5.44347535080515	4.86999387349655	5.59214947209591	5.17365035247286	0.550728331425407	0.117907346457303	0.379889870246442
Merged-chr11-77078481-4	chr11	77078372	77078572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030756)	promoter-TSS (NR_030756)	-35.0	NM_001012309	237859.0	Mm.156195	NM_001012309	ENSMUSG00000037958	Nsrp1	8030451K07|AI851076|AL022898|Ccdc55|NSpr70|NSrp70	nuclear speckle regulatory protein 1	protein-coding	6.89296455725863	6.83486259224847	6.19196811513104	6.66632788214383	6.92141764444393	6.59472822446723	6.9214162505577	6.79625933087692	0.204025499885607	0.383262236421051	0.685159161661391
Merged-chr15-66801727-4	chr15	66801628	66801828	+	985.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 1 of 7)	intron (NM_001029841, intron 1 of 7)	30101.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	5.36136142271901	4.88414732403719	5.38993424448171	5.98066425156475	4.98230531622707	5.0752874662962	5.02219371102815	4.89185982770225	-0.903614373573146	0.0132187922871249	0.0960985002763011
Merged-chr1-157458538-4	chr1	157458495	157458695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356419)	promoter-TSS (NM_001356419)	27.0	NM_001356419	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	5.64537486875353	5.72456610478504	5.56462198985923	5.61492499823168	5.60755576347541	5.46376247931024	6.30559792163642	5.76778037550561	0.309881665479456	0.29406157128628	0.606446191202461
Merged-chr6-87521425-4	chr6	87521289	87521489	+	972.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	ORR1F|LTR|ERVL-MaLR	11870.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	4.79241456012064	4.67637657304702	4.82848419702503	4.87977961486939	4.6083397917544	4.34530112528977	4.8723492177349	4.67800008302404	-0.339107598991183	0.335573027010767	0.645927430703489
Merged-chr5-136136104-4	chr5	136136006	136136206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347492)	promoter-TSS (NM_001347492)	-32.0	NM_027891	71735.0	Mm.425292	NM_027891	ENSMUSG00000029703	Lrwd1	1200011O22Rik|AU042569|AW548074|Orca	leucine-rich repeats and WD repeat domain containing 1	protein-coding	6.83040210098389	6.77496380626004	6.35214811083725	6.67867466073988	6.44181125202481	6.25984085933617	6.6330359876709	6.27001778687792	-0.379370388347102	0.097952226472013	0.342965297262601
Merged-chr2-163597907-2	chr2	163597807	163598007	+	977.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4407.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	2.643748240216	2.93227359643787	2.98849179384491	2.4692664686463	2.86907216265123	2.9727875615715	3.09152174273131	3.35426907057796	1.35211502565844	0.0436319803584176	0.212615919075225
Merged-chr5-123277535-3	chr5	123277445	123277645	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49355.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	4.57163718574129	4.35508585874589	5.0815823985745	4.72573990125727	3.26919677967172	3.70438519569933	3.7004529101717	3.57453906211344	-3.4886540547573	6.97725849258262e-10	4.62415532815213e-08
Merged-chr10-30781222-4	chr10	30781125	30781325	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	22101.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	4.34484861296116	4.40296360497107	4.53953469281826	4.35007471663168	4.2305045050081	4.13597579427044	4.1478773236361	4.06293019178748	-0.634332041897077	0.105442390783925	0.357405152887106
Merged-chr11-69846513-4	chr11	69846407	69846607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023564)	promoter-TSS (NM_023564)	-110.0	NM_023564	70310.0	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	6.61917642890722	6.72856610821416	6.54287300593123	6.25242079698508	6.20982243732142	6.51163437506548	6.30232392342188	6.65986788730818	-0.162462815991121	0.498714504146996	0.767789931450427
Merged-chr8-46143643-4	chr8	46143576	46143776	+	822.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19530.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	3.36661782424113	3.79124845994762	3.65098746809389	3.35287170022422	3.7604759659625	3.54386358719092	3.63583600826338	3.54276719654976	0.260723880727836	0.604677956249071	0.828509474255204
Merged-chr18-10229776-4	chr18	10229665	10229865	+	955.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47973.0	NM_009071	19877.0	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	4.55267791905518	4.43909124471056	4.82445249880114	4.61520256422749	4.79142496474196	4.64161876215106	4.8011998491889	4.95326889387995	0.401096527072058	0.243964819513965	0.555012849901961
Merged-chr11-26593564-5	chr11	26593444	26593644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027260, intron 1 of 12)	CpG	376.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	6.40260299123359	6.58335071563062	6.87104202106104	6.4676631585401	6.36392689027511	6.63407644671838	6.49214201478895	6.7749236156106	-0.02671416443192	0.907242373703567	0.96565361691694
Merged-chr3-116804679-2	chr3	116804580	116804780	+	748.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001362367, intron 2 of 27)	intron (NM_001362367, intron 2 of 27)	3486.0	NM_001362367	77559.0	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	3.08327757408689	2.63972744097166	2.86777437370913	2.32020981701668	3.22009974862988	3.61086262495573	3.51731130022985	3.71049466614569	3.39647995607197	1.44004704206097e-05	0.000382752458576766
Merged-chr3-59219546-4	chr3	59219432	59219632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357010, intron 3 of 3)	intron (NM_001357010, intron 3 of 3)	-8650.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	5.69907386489892	6.17231804750791	5.62014450812928	5.75699235410771	5.83011876044446	6.23031660952539	5.44748858293014	5.47095519932732	-0.0780104598147094	0.800367250065652	0.923040237917604
Merged-chr13-41601872-4	chr13	41601762	41601962	+	902.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-4354.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	4.48470741257454	4.81299834686809	5.42914628127367	5.1388510371627	4.68493779686461	4.61972803113439	5.25135629931904	4.93871469691953	-0.23474396830725	0.552608563555204	0.799847996935475
Merged-chr17-34397476-2	chr17	34397376	34397576	+	765.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1344.0	NM_001001177	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	3.19690490907385	3.22868134506998	3.09291777579751	3.01634663333247	2.5385708606876	2.74915164350777	2.77851480887198	2.6413063790494	-2.36547029253771	0.000956683667527062	0.0129879433093475
Merged-chr10-42055490-2	chr10	42055390	42055590	+	696.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	-37108.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	3.73102177415135	3.84862480085769	3.2660868158305	2.9901107633756	3.43760422681788	4.08216435653058	3.38561491492844	3.62736295457523	0.471618777911694	0.435248648526324	0.724494615589096
Merged-chr17-53690143-4	chr17	53690056	53690256	+	968.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028232)	promoter-TSS (NM_028232)	-841.0	NM_028232	72415.0	Mm.153202	NM_028232	ENSMUSG00000023940	Sgo1	3300001M08Rik|C81037|Sgol1	shugoshin 1	protein-coding	4.87033376798852	4.51457107730579	4.79540980252597	5.32147812834435	4.96420916038793	4.76393766158916	5.16787279621558	4.97354552393607	0.0858496580379301	0.817780281029328	0.929998999051707
Merged-chr7-125596607-4	chr7	125596519	125596719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-6810.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	5.9094959962345	5.75044000706845	5.55572858452549	5.66301823561578	6.01637942702073	5.89583230152487	6.00563912018606	5.81475129222378	0.355461772200223	0.155372679348104	0.440979076070846
Merged-chr11-22814551-4	chr11	22814440	22814640	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45195.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	4.85209001942729	5.03868211848624	4.92484309112272	4.61074838571738	5.26242702147427	5.25950059743477	4.58852587294343	4.56115926663682	0.223457544398287	0.556410384202708	0.801975027076879
Merged-chr13-42822760-2	chr13	42822660	42822860	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005740, intron 1 of 12)	intron (NM_001005740, intron 1 of 12)	-43487.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	2.90425391764089	2.95950473741633	2.90461785135293	2.52363753052204	2.95014232923391	2.94980869035661	3.01107559690051	2.90314595950992	0.575408896431466	0.364536016582244	0.669279814395716
Merged-chr3-10342721-4	chr3	10342633	10342833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025512, intron 6 of 7)	RLTR20D|LTR|ERVK	-7077.0	NM_001010834	241877.0	Mm.442146	NM_001010834	ENSMUSG00000058921	Slc10a5	Gm405|mP5	solute carrier family 10 (sodium/bile acid cotransporter family), member 5	protein-coding	7.31525796282725	7.44751679143864	7.49016099311487	7.32003739082231	7.38340068528082	7.23018394065383	7.36960419540153	6.98204876468713	-0.182425213474323	0.33520217937574	0.645574985284499
Merged-chr18-36194810-4	chr18	36194700	36194900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167891, intron 1 of 9)	intron (NM_001167891, intron 1 of 9)	2360.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	5.70554211054293	5.46044745979215	5.49920093856539	5.79309625650446	5.52485839614814	5.12979084898319	5.49930926725997	5.85928736434232	-0.169406943986343	0.568871411589509	0.80908960167705
Merged-chr3-136669994-4	chr3	136669902	136670102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293622)	promoter-TSS (NM_001293622)	-64.0	NM_008913	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	8.97099345217252	8.87137185023026	8.92454783573248	9.06617361299502	8.92338728662126	9.09489177229559	9.14998978106198	8.99180907768796	0.096295861600241	0.506187298266336	0.771888853855569
Merged-chr3-90248869-4	chr3	90248759	90248959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013901, intron 1 of 3)	intron (NM_013901, intron 1 of 3)	667.0	NM_013901	30791.0	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	7.65882757448147	7.86278635128668	7.45551376541541	7.42499246202495	7.66841772415522	7.47906434507752	7.39922586156331	7.39101432483959	-0.150440158260088	0.436450323130427	0.72511335456143
Merged-chr3-37139368-3	chr3	37139265	37139465	+	905.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13411.0	NM_008366	16183.0	Mm.14190	NM_008366	ENSMUSG00000027720	Il2	Il-2	interleukin 2	protein-coding	4.13304863555406	3.74524032318662	4.21897667597471	4.69124238726732	3.84688155987535	3.57535282158708	4.02459595283792	3.83532775556295	-1.13449448795736	0.0253987703822731	0.150154408392011
Merged-chr2-132094622-4	chr2	132094548	132094748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355431, intron 2 of 6)	intron (NM_001355431, intron 2 of 6)	50460.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	8.03643957148249	8.10831101294283	7.94868293125446	8.11915199727363	8.05327038895974	8.07549710652393	7.88910311357964	8.11551793054285	-0.0294166578808135	0.853102817405233	0.944678751070911
Merged-chr13-46727268-4	chr13	46727182	46727382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175749, intron 1 of 21)	CpG	567.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	6.04896032234976	6.13697954306861	6.34292574653102	5.707052588927	6.13991654769362	6.39016494094145	6.36129303558299	6.38952726871394	0.396673072670867	0.119548723721139	0.382582591257021
Merged-chr10-77033157-4	chr10	77033053	77033253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031196)	promoter-TSS (NM_031196)	-59.0	NM_031196	20509.0	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	6.97249799600026	7.23233989544507	6.94757116534066	6.97953341921388	7.17265729304677	7.16334570028407	7.00145051749517	7.18267260441895	0.131242988090938	0.489925281648323	0.761966459176932
Merged-chr4-102808441-4	chr4	102808342	102808542	+	845.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144906, intron 1 of 23)	MTD|LTR|ERVL-MaLR	48307.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	4.11957924818237	3.72607035160874	4.21060138656905	4.50503905510375	3.97373908336419	4.14676107499032	4.14780556492437	4.20795880239008	-0.172233816623195	0.705138385504811	0.881587544161158
Merged-chr8-107030209-4	chr8	107030058	107030258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1168.0	NM_126165	116733.0	Mm.236004	NM_126165	ENSMUSG00000031913	Vps4a	4930589C15Rik|AI325971|AW553189	vacuolar protein sorting 4A	protein-coding	6.92196963381521	7.01323508483703	6.97472580728756	6.73137043468102	6.93136568738226	6.82246703159676	6.98878323704647	7.24099060991324	0.13794380631171	0.499509180022485	0.768387448003553
Merged-chr6-56808830-4	chr6	56808725	56808925	+	921.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11012.0	NM_001362213	210973.0	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	4.65720793435235	5.0553959457411	4.28679799827343	4.87427431326268	4.70159870941989	4.75045044453366	4.98398873892675	4.6139381047144	0.0172855755490491	0.963515633480366	0.986968281921325
Merged-chr11-8628922-4	chr11	8628824	8629024	+	926.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	35611.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	4.34169240673161	4.16604118752519	4.34235350312024	4.62456830719895	4.65674062821796	4.2224327281005	4.48880898018014	4.46704241491015	0.184846746005532	0.641197672510341	0.848625403955452
Merged-chr17-29396363-4	chr17	29396234	29396434	+	977.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35420.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	4.96224661951037	4.73300638161759	4.28169019853012	3.93828014359466	4.8512839988095	4.93434414968409	4.77380135670399	4.72113827069959	0.621803567103495	0.141729893954725	0.41884783250682
Merged-chr6-65141123-3	chr6	65141034	65141234	+	927.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 1 of 5)	intron (NM_019455, intron 1 of 5)	3596.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	3.36625658177858	3.40575470638575	3.63654221075271	3.92688452882734	3.5507637257658	3.2836571886276	3.46813410135761	3.30368936744889	-0.68300795146713	0.213900455304627	0.519454810922143
Merged-chr11-77515039-4	chr11	77514942	77515142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026185)	promoter-TSS (NM_026185)	-75.0	NM_026185	67477.0	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	6.64526687703231	6.43837439744577	6.42487206768819	6.64589361951288	6.49445245030899	6.1755947598013	6.50711873929521	6.06272264019133	-0.316032181679316	0.174095576048031	0.468380731281809
Merged-chr8-84743313-3	chr8	84743191	84743391	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	31078.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	3.74923110496871	4.36041758704183	3.94870616588668	3.63856368550531	3.49939068738451	3.81549640877997	3.56474849474714	3.80020053032028	-0.818584403524484	0.108464244724507	0.363483160530424
Merged-chr10-60738293-4	chr10	60738230	60738430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	B1_Mm|SINE|Alu	14452.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	5.451395397141	5.6204807149484	5.92370486647923	4.46887690987068	5.68709273842825	5.41427909026841	5.53338243049861	5.53136298953959	0.140323558571831	0.718002375638821	0.88731515696296
Merged-chr15-78581562-4	chr15	78581436	78581636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155437)	promoter-TSS (NR_155437)	53.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	5.63494630532793	5.78039547863369	5.42041513693458	5.67745380059473	5.51879064033964	5.30415092709632	5.27226468403501	5.47400716679651	-0.411433040888861	0.138633818180225	0.414213849819512
Merged-chr10-93768402-3	chr10	93768328	93768528	+	691.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-63127.0	NM_001206851	327799.0	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	3.40858790238318	3.68164300982387	3.74472707569223	3.41208367279041	3.56430707974255	3.76062987269025	3.86687267188571	3.69228837921581	0.496603117069526	0.305207970941304	0.617661724201953
Merged-chr16-4381696-4	chr16	4381598	4381798	+	916.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	38800.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	4.65202353269592	4.61897900489432	4.5721865249728	4.67617894970564	4.76948967475844	4.61720311017071	4.84403155544607	4.52707566310323	0.140942107592969	0.681613403883461	0.869519158288454
Merged-chr12-105013271-4	chr12	105013143	105013343	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3434.0	NM_172500	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	6.09168587267281	6.29722434198906	6.58794888130171	6.37465157561581	5.29922394571248	5.33991990394168	5.59487833389648	5.30070831564809	-1.57292965689611	4.16509798340338e-09	2.37744594515372e-07
Merged-chr4-57950161-4	chr4	57950070	57950270	+	975.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 3 of 4)	intron (NM_011660, intron 3 of 4)	6241.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	4.96368309321079	4.93155413951533	5.71845268082079	5.41534690689857	4.96082110507538	5.17691666182629	4.78578392300808	4.88544407979562	-0.648864807036209	0.0665085414682191	0.274865672250268
Merged-chr3-65529484-4	chr3	65529389	65529589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027955)	promoter-TSS (NR_027955)	-75.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	7.51759958452053	7.39517512383158	7.99055019534044	8.02960879463661	7.79658879834137	7.53405769872123	7.82872248180565	7.95873424085399	0.0249817058645316	0.907386368481892	0.96568164776089
Merged-chr2-31770828-4	chr2	31770761	31770961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	10688.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	5.68849732015586	5.93865473282814	5.55069833902586	5.6215490697508	5.76586580007108	6.30185085606663	5.73675700143967	5.9243088289753	0.38499445728476	0.160958343152327	0.44942938597362
Merged-chr17-86337284-4	chr17	86337220	86337420	+	893.695801	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	-50142.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	3.8665502874276	4.11789692660843	4.30105641712107	4.31466526435602	3.9230886376816	3.86882304452479	4.50280761969294	4.21381448870034	-0.0476330000230452	0.916002511198026	0.968912323381988
Merged-chr1-155475177-4	chr1	155475078	155475278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	51933.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	5.49218136232654	5.26489885779663	5.49313119374553	5.74675303315732	5.64176490539456	5.695331090402	5.71791888688764	5.30833055824968	0.128333981734467	0.657522826405642	0.857348866268428
Merged-chr19-45659739-4	chr19	45659579	45659779	+	886.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 1 of 8)	CpG	514.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	4.40870044919741	4.49281635321095	4.80443936534076	4.48943101341835	4.84086555493193	4.67300846129173	4.47847746187673	4.65771717042979	0.272676997149614	0.448552586709352	0.733856919708496
Merged-chr11-20553161-3	chr11	20553010	20553210	+	826.622253	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021372, intron 1 of 1)	intron (NM_021372, intron 1 of 1)	9857.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	2.81688600409673	2.5460349923287	2.88117485794364	2.61294287996192	2.99011162456746	2.92625697886758	2.98820090658403	3.10759362768046	1.32683785150163	0.0327293507053002	0.177347933454063
Merged-chr5-122811883-4	chr5	122811787	122811987	+	808.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042491, intron 5 of 16)	B3|SINE|B2	9455.0	NM_021505	59008.0	Mm.332667	NM_021505	ENSMUSG00000029472	Anapc5	2510006G12Rik|AA408751|AA536819|AA986414|APC5|Anpc5	anaphase-promoting complex subunit 5	protein-coding	4.11206544702414	4.57979891179527	4.06062390745727	3.7612549049564	4.3187207757958	4.55952099155849	4.55675205371894	4.25486946405735	0.652726024090387	0.138259545304933	0.413646725009686
Merged-chr10-96829054-3	chr10	96828943	96829143	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-206725.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	4.21844762489184	4.12779339500655	4.14129330449	4.15395883041294	3.61751764746886	3.44719628593131	3.58544689289677	3.32865775223351	-2.01822769900307	6.70371022481916e-05	0.00144946351789916
Merged-chr5-146288177-4	chr5	146288152	146288352	+	979.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359991, intron 6 of 12)	intron (NM_001359991, intron 6 of 12)	57002.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	4.12022409427589	3.68564698471266	3.98140874107054	4.53412716420329	3.68417191655595	3.70278405996883	3.96438741091053	4.24369594004662	-0.565866730989939	0.266358036795799	0.578085840707737
Merged-chr12-69733693-4	chr12	69733589	69733789	+	827.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361691, intron 1 of 4)	intron (NM_001361691, intron 1 of 4)	8744.0	NM_001361690	68055.0	Mm.27844	NM_026536	ENSMUSG00000054894	Atp5s	1110015E18Rik|ATPW	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit S	protein-coding	4.31493885426519	4.05506225638854	3.86481961620605	4.01682093720407	4.3736905961421	4.30859799351359	4.45307143836107	4.43367059679411	0.80279568789309	0.042313953073392	0.208724297224366
Merged-chr7-64048541-4	chr7	64048434	64048634	+	982.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-105301.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	5.41429211633041	5.13758489228055	5.41523527950793	5.59436584017398	4.95118229753856	5.28560717143422	4.81945189206888	5.41142067022937	-0.509418609617168	0.115482389870179	0.376025664618916
Merged-chr11-95838886-5	chr11	95838841	95839041	+	897.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163464, intron 1 of 7)	intron (NM_001163464, intron 1 of 7)	-3354.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	3.67407037963713	4.45033578134772	3.7906438513294	3.75563390023262	4.01181713891592	4.02045594913559	4.19402796669102	3.61076364299914	0.0485465542054007	0.923819060297435	0.971863340184091
Merged-chr9-14203973-1	chr9	14203873	14204073	+	696.0	f0_balb.idr	Intergenic	Intergenic	-72328.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	2.8949430016987	2.74071510983138	3.11166369117347	3.12294876763734	2.46686075784575	2.74076880692153	2.62791106487855	2.70397583323598	-1.77209956319378	0.0123456141320518	0.091622194589231
Merged-chr1-165655250-4	chr1	165655148	165655348	+	764.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 5 of 5)	intron (NM_001038846, intron 5 of 5)	-20707.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	4.0333451668893	3.78397520116922	4.08207943340158	3.78413444385696	4.13576863867211	4.29969684183234	4.31736895308266	4.12591620965411	0.803730380558732	0.0528184594524371	0.23971301856572
Merged-chr13-62466804-4	chr13	62466722	62466922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136496)	promoter-TSS (NM_001136496)	-10.0	NM_001136496	71508.0	Mm.442497	NM_178875	ENSMUSG00000113450	Zfp935	8430426H19Rik|Es113	zinc finger protein 935	protein-coding	7.08558850917086	6.91317621326983	7.44110794244854	7.40934613558935	7.42711248599717	7.33647858947834	7.56159641617635	7.26603587180739	0.223543284173886	0.278151734014284	0.590297026696564
Merged-chr9-95328686-2	chr9	95328588	95328788	+	653.875	f0_balb.idr|f1_balb.idr	Intergenic	Lx4A|LINE|L1	78582.0	NM_018763	54371.0	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	3.61622919673959	3.4294688168373	3.7116896442555	3.74528859274175	3.10600697143342	3.25844071327	3.26956952453728	3.56438960746075	-1.15643878823284	0.0337640831312174	0.181162664493861
Merged-chr9-65533081-4	chr9	65532936	65533136	+	997.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47051.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	4.73288991882918	4.84216612124135	4.96956476685835	4.72465325989347	5.75250344005817	5.18039762921468	4.94547571987829	5.19572601273644	0.962284131021141	0.00504141940959518	0.0478246055203505
Merged-chr14-120362715-4	chr14	120362615	120362815	+	845.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	56263.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	4.16750655642322	4.08140425238839	4.63711931902258	4.86138948760297	4.01439486421385	4.03199725696834	3.94813601688761	3.90557656227306	-1.29832408656652	0.00453523929006391	0.044178704998968
Merged-chr2-32745869-2	chr2	32745769	32745969	+	602.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252547, exon 4 of 11)	exon (NM_001252547, exon 4 of 11)	-4853.0	NM_027529	70730.0	Mm.401360	NM_027529	ENSMUSG00000009551	6330409D20Rik	AA517851	RIKEN cDNA 6330409D20 gene	protein-coding	2.84459691072634	2.63950916350799	2.90501505617923	2.66129976113569	2.89329588689809	2.88895873384255	2.83471000460436	2.84351883564644	0.494979997147672	0.421120370654166	0.713739716236704
Merged-chr19-44554754-4	chr19	44554652	44554852	+	803.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026061, intron 2 of 4)	intron (NM_026061, intron 2 of 4)	690.0	NM_001347447	67264.0	Mm.2060	NM_026061	ENSMUSG00000025204	Ndufb8	2900010I05Rik|AI987932|CI-ASHI	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8	protein-coding	3.71631516165888	3.31041873397088	4.04861098169639	3.68954803936165	3.43308686033288	4.04060166139193	3.98746508833892	3.76757227425821	0.32261493299648	0.542475583809609	0.793833794123973
Merged-chr19-57452934-4	chr19	57452831	57453031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028115)	promoter-TSS (NM_028115)	25.0	NM_028115	72133.0	Mm.258404	NM_028115	ENSMUSG00000025086	Trub1	2610009I02Rik|9030425C13Rik|AI448235|BB118943|C76870	TruB pseudouridine (psi) synthase family member 1	protein-coding	6.42010630654273	6.29175244311345	6.22565850926156	6.35467794067	5.84257074887172	6.21627834800601	6.26809311651508	6.14184267719364	-0.32250970722328	0.170604360643609	0.463826736421506
Merged-chr1-156420973-7	chr1	156420849	156421049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346967)	promoter-TSS (NM_001346967)	-34.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	5.03466330692344	5.34663491107543	5.23727730640438	5.11140341410547	5.33209355561556	5.52805909129977	5.21145512251105	5.16995225898485	0.241727417787052	0.414982300199171	0.709417708909786
Merged-chr4-72165865-4	chr4	72165792	72165992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285531, intron 6 of 6)	intron (NM_001285531, intron 6 of 6)	35001.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	6.29118222293677	6.31101668646375	5.96212672696298	6.4985187602451	6.19722853531675	5.73202535624852	6.47510530391872	6.11290058357408	-0.199368194958745	0.455474149122351	0.738955495643786
Merged-chr10-68373145-3	chr10	68373045	68373245	+	837.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52003.0	NR_045357	75148.0	Mm.23505	NR_045357	ENSMUSG00000112157	4930545H06Rik	-	RIKEN cDNA 4930545H06 gene	ncRNA	3.33491154161708	3.17160724246769	3.27298125907568	3.53289328674289	3.44021349958681	3.38621208263642	3.7314293811844	3.74627024596942	0.782426995605617	0.144246860713021	0.423168911457452
Merged-chr11-69100037-4	chr11	69099932	69100132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159367)	promoter-TSS (NM_001159367)	-120.0	NM_001159367	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	7.33608318501358	7.3700921763258	7.34748494532443	7.03855573013969	7.48320846380976	7.20478096507172	7.29063263596651	7.47625766748291	0.142125502313084	0.459997648625457	0.742300655594817
Merged-chr10-95795698-3	chr10	95795608	95795808	+	935.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144955.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	4.17614801647443	3.95859675727241	3.79298705855599	4.68053596758899	3.5144957984015	3.60008881503244	4.02780275572941	3.79088027006821	-1.28621377149986	0.013874164676111	0.0993739071293334
Merged-chr5-122550639-4	chr5	122550549	122550749	+	842.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001358917, exon 19 of 19)	3' UTR (NM_001358917, exon 19 of 19)	-48424.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	4.84215984292776	4.45983051653846	4.84297261439846	5.07389603532179	4.58999334357627	4.71240574341387	4.33350663244826	4.53429165018047	-0.613206407103665	0.101339312022777	0.349327869353383
Merged-chr19-3907506-1	chr19	3907406	3907606	+	1000.0	f0_balb.idr	promoter-TSS (NM_001167784)	promoter-TSS (NM_001167784)	-373.0	NM_001136091	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	4.4289137195806	4.23878990465797	4.7866943154382	4.22400081384019	3.8085910989744	4.56091096818291	4.2801399424182	4.42673594895143	-0.334501805882399	0.453000397050133	0.737210555160991
Merged-chr15-74934284-4	chr15	74934167	74934367	+	895.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20784.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	3.81990106748422	4.05964566592797	3.75744564684423	3.62714957251104	4.55377526680838	4.82888373790202	4.60436642090844	4.14521017714101	1.84514911504995	1.68948773085987e-05	0.000440498341373168
Merged-chr2-109278838-4	chr2	109278729	109278929	+	862.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029790)	promoter-TSS (NM_029790)	-539.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	3.52471967459803	3.55801080399006	3.74610515860794	3.61315454860939	4.02123623657016	3.64130351971623	3.77980403022253	3.84148994476049	0.671887443687016	0.147512300122079	0.428647287497111
Merged-chr18-32408042-4	chr18	32407952	32408152	+	896.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 2 of 17)	intron (NM_001360876, intron 2 of 17)	-29768.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	4.09820594597095	3.60612271630776	4.00432467440124	3.8672629882393	4.08604851168562	4.02517594327563	4.3252998973163	4.1841434924145	0.686545859658777	0.113240212284851	0.372026450208778
Merged-chr19-12433267-4	chr19	12433172	12433372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5367.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	5.94239144326034	6.35256849063901	5.98565228489675	6.1489481429179	5.66367555933285	5.43051858885903	5.5150105874399	5.34960712914736	-1.01055575819799	0.000165229136366998	0.00310148858055552
Merged-chr9-121985152-2	chr9	121985053	121985253	+	967.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289559, intron 1 of 2)	intron (NM_001289559, intron 1 of 2)	10873.0	NM_001289559	215494.0	Mm.402151	NM_153540	ENSMUSG00000066235	Pomgnt2	Ago61|C85492|Gtdc2	protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2	protein-coding	2.95258649160057	2.80198806977276	3.13648565018656	2.63945427413954	3.40751612996625	3.06402319223683	3.00602863205495	3.24390133148954	1.28260387134332	0.0384652789039955	0.196746197693841
Merged-chr3-127918218-3	chr3	127918122	127918322	+	709.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040552, intron 1 of 4)	ORR1D2|LTR|ERVL-MaLR	2051.0	NR_040552	329753.0	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	2.83420462577918	2.82724877555022	2.75126950747897	2.54061766054647	3.43564729891178	3.60111469349867	3.92269167165652	3.52508761107511	3.89061355788023	1.52380544316253e-09	9.48102689150926e-08
Merged-chr11-63790420-4	chr11	63790345	63790545	+	889.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131839.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	4.17272011181197	4.45922910840365	4.31646901744693	4.24750125237022	4.15900217152264	4.3988211652513	4.42477572834876	4.79560990817313	0.366813832407315	0.358697039873428	0.664662916230201
Merged-chr2-29965451-4	chr2	29965350	29965550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309460)	promoter-TSS (NM_001309460)	-110.0	NM_001177668	20740.0	Mm.204969	NM_001076554	ENSMUSG00000057738	Sptan1	2610027H02Rik|Spna-2|Spna2	spectrin alpha, non-erythrocytic 1	protein-coding	8.37482378512336	8.6327340781262	8.2820633220321	8.13718712090633	8.40423561522021	8.6710916650303	8.42443392919084	8.21175356298384	0.0894599230282299	0.626479123615051	0.840568473888704
Merged-chr4-118180117-4	chr4	118179998	118180198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172382)	promoter-TSS (NM_172382)	-55.0	NM_001161823	230674.0	Mm.234234	NM_172382	ENSMUSG00000033326	Kdm4a	D4Ertd222e|JHDM3A|Jmjd2|Jmjd2a|mKIAA0677	lysine (K)-specific demethylase 4A	protein-coding	8.77215549381524	8.56902511921596	8.64964474078193	8.69159781082583	8.62512240754179	8.71458430901688	8.91103236815922	8.78813686383559	0.111958663795251	0.45769963713262	0.740761263689429
Merged-chr11-71888707-3	chr11	71888618	71888818	+	852.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	51404.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	3.9240846030179	3.44293913276484	3.7291661355987	3.96323072916294	3.80713511306781	3.48151600356373	3.95127068823125	3.82840869402942	-0.0220277146782004	0.964672068992022	0.98746538769534
Merged-chr18-53249748-4	chr18	53249600	53249800	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	4038.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	5.33676317543955	5.52598058494045	5.86512779377407	5.57257840623139	4.97410459070175	4.99447250289229	5.6834151145909	5.75405244742449	-0.326175335496842	0.33947058956281	0.648774648981312
Merged-chr10-79916977-4	chr10	79916870	79917070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177994)	promoter-TSS (NM_177994)	-1.0	NM_001359010	114229.0	Mm.191035	NM_053244	ENSMUSG00000035773	Kiss1r	Gpr54|KiSS-1|kiSS-1R	KISS1 receptor	protein-coding	5.97356553023547	5.9456555709555	5.86314238890277	5.57379199908029	6.00671031158035	5.86530431523504	6.08433145952645	5.71089069722026	0.15609394263282	0.551739206417046	0.799073691139046
Merged-chr14-17713245-4	chr14	17713149	17713349	+	842.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	52289.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	4.44244097275089	5.28082543748964	4.69642302076871	4.41532514410218	4.84268119980526	4.52749468357743	4.74787929624776	4.39302118778127	-0.235478810500455	0.571780400371958	0.810796818831692
Merged-chr10-96374777-4	chr10	96374670	96374870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	148563.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	7.43186981185458	7.7443355253887	7.30238469025321	7.16830436521911	7.53398363413678	7.33397186220298	7.36741142302841	7.17494209949269	-0.0811056083028592	0.696583015930685	0.877279494867657
Merged-chr6-37046392-3	chr6	37046296	37046496	+	730.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 12 of 32)	intron (NM_001347104, intron 12 of 32)	-236217.0	NM_008973	19242.0	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	3.25260666148515	3.2843971710564	3.0691887845731	3.24935689223379	3.44007992182094	3.24209804881462	3.29637081535372	3.25134818187128	0.35358440395364	0.507349128709018	0.772710503440438
Merged-chr1-131911070-4	chr1	131910971	131911171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145804, intron 1 of 6)	CpG	613.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	6.30921896351421	6.7829683554381	6.64459699667737	6.47436859034853	6.53502516812358	6.23609100498686	6.55084811476399	6.16431699082235	-0.253294551139721	0.283939460485408	0.59596977052049
Merged-chr6-5291014-3	chr6	5290922	5291122	+	654.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183308, intron 1 of 8)	intron (NM_183308, intron 1 of 8)	7351.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	3.47877031097136	3.72657161649049	3.36388471089182	3.4619349847002	3.4655862316786	3.53696959015507	3.35203439411185	3.53128738687918	-0.140208362340352	0.780670499299898	0.914613598929882
Merged-chr4-58952144-3	chr4	58952040	58952240	+	749.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355408, intron 5 of 6)	intron (NM_001355408, intron 5 of 6)	8512.0	NM_001355408	100041581.0	Mm.463942	NM_001099323	ENSMUSG00000038630	Zkscan16	XM_143800|Zfp483	zinc finger with KRAB and SCAN domains 16	protein-coding	3.55047633677399	3.86091856510744	3.38692961309403	3.48019076790859	3.20581970633957	3.3118951780507	3.53612502728874	3.19799954351502	-0.917589672894871	0.0922152122199616	0.332162566488162
Merged-chr1-181345748-1	chr1	181345648	181345848	+	857.6666869999999	f0_balb.idr	Intergenic	Intergenic	-6880.0	NM_001160212	72978.0	Mm.338083	NM_028408	ENSMUSG00000026514	Cnih3	2900075G08Rik|CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding	3.89810594218001	3.45741988874483	4.03358326495634	4.18748587734254	3.42933697489007	3.56713721905196	3.83386864029062	3.9428182985112	-0.645607863446552	0.218548782303839	0.525814135432487
Merged-chr6-16884109-4	chr6	16884011	16884211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 1 of 6)	intron (NM_031198, intron 1 of 6)	14330.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	6.15393885447724	5.96982647181092	6.00975679133156	6.56609716295611	5.966283310753	6.09525752282789	6.04302316543033	5.84147253353092	-0.3587786910593	0.175715254409592	0.470550643100841
Merged-chr8-14888061-2	chr8	14887961	14888161	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012000)	promoter-TSS (NM_012000)	-475.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	4.11150937535805	3.73873877444784	3.62052326681	4.09020658927243	3.80966374540795	3.79712417058923	3.92056751968585	3.73298240712628	-0.286908532505914	0.539905452110557	0.79241870993623
Merged-chr19-24271793-7	chr19	24271633	24271833	+	983.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008044, intron 3 of 4)	intron (NM_008044, intron 3 of 4)	8853.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	4.61350787553743	4.74848877352213	4.43616833870289	4.73988171716671	4.82456069083677	4.66041910088401	4.91834451542114	4.93917060239996	0.394306816353936	0.248848470286651	0.56007881897978
Merged-chr6-134043798-4	chr6	134043702	134043902	+	793.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	8102.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	3.93487829764532	3.96267223170775	3.36592757362591	3.26780202012606	4.18375366382197	3.74348874203153	3.8712334481605	3.88601229207904	0.770396646825394	0.147519576568153	0.428647287497111
Merged-chr3-115766362-4	chr3	115766255	115766455	+	960.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51300.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	5.41802326871055	5.86371097999479	6.1255975722015	6.30227283308196	5.09277820066294	5.36799893554114	5.4794691629939	4.98679703907495	-1.26086005047054	0.000100995034209882	0.00204690362756981
Merged-chr12-52001779-4	chr12	52001676	52001876	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347404, intron 2 of 3)	intron (NM_001347404, intron 2 of 3)	4731.0	NM_029545	328092.0	Mm.2821	NM_029545	ENSMUSG00000020956	Dtd2	4930578F06Rik|6530401N04Rik|B830049N13Rik	D-tyrosyl-tRNA deacylase 2	protein-coding	4.25352113734637	3.9984951735361	3.7036518674285	4.20495388870919	4.13307730343089	4.10559397413227	4.01534977369408	4.1232902525184	0.0758957780505194	0.861295831298134	0.947574515069552
Merged-chr2-119251032-4	chr2	119250929	119251129	+	927.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13669.0	NM_016907	20732.0	Mm.104955	NM_016907	ENSMUSG00000027315	Spint1	HAI-1	serine protease inhibitor, Kunitz type 1	protein-coding	4.4050333668778	4.27707236464552	3.79418999864115	4.16241108812271	3.75850749927885	4.03213489321224	4.22716529807916	4.28555391164369	-0.2369632446715	0.600968258454133	0.827051492743764
Merged-chr2-62654729-4	chr2	62654626	62654826	+	877.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8471.0	NM_001164477	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	4.42594577154923	4.24266433580829	4.29503499395508	4.56548567798559	4.37034433235612	4.51257689603819	4.36464894381772	4.50447079407698	0.0782220283969834	0.835947923940625	0.937569151339979
Merged-chr10-99261521-1	chr10	99261421	99261621	+	1000.0	f0_c57.idr	Intergenic	CpG	-1710.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	5.39317903999195	5.36593651087191	5.27288243497253	5.23921178224654	5.65747548357549	5.47931077382798	5.60192355278484	5.09978348958086	0.304084690367072	0.298515949620107	0.610646820841751
Merged-chr15-43477634-4	chr15	43477532	43477732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046064)	promoter-TSS (NR_046064)	403.0	NM_025736	66736.0	Mm.244512	NM_025736	ENSMUSG00000022337	Emc2	4921531G14Rik|AV060620|AW209495|Ttc35	ER membrane protein complex subunit 2	protein-coding	6.69892228032282	6.77393693333034	7.13893892513222	7.27675186268664	6.79429365332048	6.60411751228156	6.81109108858543	6.89483350996162	-0.316242460308018	0.161924764181826	0.450986986551208
Merged-chr14-87044485-4	chr14	87044365	87044565	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019670, intron 4 of 27)	intron (NM_019670, intron 4 of 27)	96759.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	5.26991306729547	5.12508645617514	4.8037206635654	5.40068495575421	4.70714603967779	4.56929041163912	5.32461813210423	4.91589676860088	-0.518844780054343	0.156210137665516	0.442049910105904
Merged-chr8-22423490-3	chr8	22423402	22423602	+	642.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020560, intron 4 of 6)	ORR1D2|LTR|ERVL-MaLR	12162.0	NM_020560	57312.0	Mm.289402	NM_020560	ENSMUSG00000031533	Mrps31	1500002D03Rik|AA960481|Imogen38|Imogen44	mitochondrial ribosomal protein S31	protein-coding	3.38390706195452	3.42270094745583	3.32301656210805	3.76663772980119	3.64357096268556	3.61345115795531	3.53846181587458	3.44111203780817	0.189480588235415	0.717131173987243	0.886902970891993
Merged-chr11-115135074-4	chr11	115134953	115135153	+	950.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	-1061.0	NM_145634	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	4.1966535558084	4.2886937539105	4.67040485640865	4.82520242001313	4.55752544726587	4.21559669836329	4.49698067075324	4.70265228201974	-0.0662125599886285	0.871895078449425	0.95183223179801
Merged-chr4-103313779-4	chr4	103313684	103313884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025909)	promoter-TSS (NM_025909)	-62.0	NM_025909	67013.0	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	7.73247313476148	7.52231046593635	7.91086994617574	7.87362262079128	7.67748306624861	7.75070598645174	7.75022967013039	7.19269288240784	-0.205775903043085	0.306994710140106	0.619287657993402
Merged-chr13-105047496-4	chr13	105047377	105047577	+	917.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	7453.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	5.14835016577915	4.88356242157398	4.46056677555299	4.99287567148857	4.81336081961339	4.93278121485604	4.77375933409897	4.25170133181126	-0.36894192589635	0.340359794835455	0.649455684748532
Merged-chr13-22028875-4	chr13	22028774	22028974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6769.0	NM_175659	319168.0	Mm.250564	NM_175659	ENSMUSG00000069302	Hist1h2ah	-	histone cluster 1, H2ah	protein-coding	6.06482784848005	6.58966264312545	6.43400423068207	6.69231322205339	6.64632508508152	6.7445405404086	6.55081629853355	6.72805530597236	0.26624929023788	0.253129030090465	0.564424091294439
Merged-chr3-103872752-4	chr3	103872642	103872842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104070, intron 3 of 22)	intron (NR_104070, intron 3 of 22)	12465.0	NM_008979	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	6.02583783304669	5.65875882627829	5.93879398103269	6.22144366180967	6.07202382247604	5.97111966843425	5.95309411667832	6.25476722486085	0.120777769770956	0.641987247599445	0.848955111735845
Merged-chr10-91181792-4	chr10	91181712	91181912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10193.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	7.38145142679108	7.56369386074076	7.43389951160127	7.53802913882472	7.78622783846743	7.78864554821559	7.97181955813577	7.74589123023302	0.4449214497207	0.00854708930277187	0.070389132185815
Merged-chr1-43110724-4	chr1	43110616	43110816	+	935.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133818, intron 2 of 3)	ORR1D2|LTR|ERVL-MaLR	12006.0	NM_133818	98404.0	Mm.28817	NM_133818	ENSMUSG00000010290	AI597479	-	expressed sequence AI597479	protein-coding	4.98480786567748	4.72960838724361	4.98565833519368	4.72202197975169	4.9630128185459	4.31295032419058	4.56166950689525	4.77848125298998	-0.337212180048305	0.363625411719098	0.668649715510373
Merged-chr10-80053510-4	chr10	80053402	80053602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008162)	promoter-TSS (NM_008162)	14.0	NM_008162	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	8.55776672095296	8.90032825803415	8.70127566758731	8.67246902961096	8.89073101742636	8.81235177106482	8.92576414328821	8.55363762406821	0.11350785053009	0.487825912589361	0.761057402147961
Merged-chr1-105805782-4	chr1	105805737	105805937	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	Lx8|LINE|L1	25114.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	5.33051822274147	5.36572379523191	5.1488512658352	5.22795910412835	4.94670816476031	5.29024403124333	5.24728551158767	5.00736973201561	-0.27527913481302	0.362011869983474	0.667306442775501
Merged-chr1-43478038-3	chr1	43477922	43478122	+	796.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	32271.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	3.22111555895024	2.93949030338778	3.67128038197055	3.09291232123398	2.89075919274265	3.3365806332338	3.26691751377742	3.33416820687756	-0.143353112702547	0.817042403332465	0.929622615879435
Merged-chr7-138398605-3	chr7	138398525	138398725	+	890.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183289)	promoter-TSS (NM_183289)	-895.0	NM_183289	70571.0	Mm.334297	NM_183289	ENSMUSG00000091002	Tcerg1l	5730476P14Rik	transcription elongation regulator 1-like	protein-coding	3.57349204049456	3.76566896503226	3.40508372456087	3.93923545073473	3.61295327898701	3.25083410358556	3.61073327195479	3.21008848044787	-0.824873973403751	0.1392277229253	0.414873784489467
Merged-chr18-61095725-4	chr18	61095643	61095843	+	904.1124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-9829.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	4.04331027163298	4.26806250978811	4.19772183007845	4.32326030769691	4.44967032925139	4.27461646573934	4.7480700034536	4.33264970483597	0.574411585897898	0.146141738261059	0.426128498942441
Merged-chr2-72038392-3	chr2	72038299	72038499	+	645.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204167, intron 3 of 5)	intron (NM_001204167, intron 3 of 5)	-16218.0	NM_001355478	56508.0	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	3.46461257179214	3.28858729671841	3.51734600818892	3.2224092860644	3.4022783386431	3.46768687339125	3.34127387693224	3.46313730964755	0.179883786770803	0.725995270478881	0.890989643736271
Merged-chr9-83576107-4	chr9	83576010	83576210	+	898.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	27772.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	4.70724138518274	4.7696078250398	5.25737225764518	5.17255042012948	4.43973372256677	4.621558789046	4.83704444942001	4.85714338247035	-0.642711003542333	0.0777504771444719	0.301551690057813
Merged-chr12-12247264-4	chr12	12247201	12247401	+	735.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-14838.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	3.62925098996371	3.74815628086863	3.74493795185812	3.72572223851828	4.05742501705671	4.11820547712751	3.9316753391946	3.99265082593967	0.879398719465037	0.0413857561056338	0.205999771597406
Merged-chr2-146855841-4	chr2	146855754	146855954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033298)	promoter-TSS (NM_001033298)	-35.0	NM_001033298	228730.0	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	8.57767865647247	8.38054449331307	8.42629657962193	8.67763385582619	8.17789305211105	8.08981428890471	8.39215955603179	7.95921987961214	-0.455950968664601	0.00809083167407737	0.0677526244387239
Merged-chr4-57952528-4	chr4	57952458	57952658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 1 of 4)	intron (NM_011660, intron 1 of 4)	3853.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	7.06353323260512	7.09339647088696	6.99065448326763	6.96553389740643	7.17474656667558	7.15466839644037	7.17556824407489	6.79377789009078	0.0849544229772437	0.663024991996515	0.860346663968351
Merged-chr6-38641426-4	chr6	38641355	38641555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4216.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	5.41629319360989	5.55041580930303	5.73529732419048	5.74878770331648	5.44939946658209	5.25621241918787	5.63430034163003	5.77715945533931	-0.146038939701019	0.606777591793893	0.829617737469389
Merged-chr11-103418735-4	chr11	103418630	103418830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6066.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	6.59081937290067	7.20387931923984	7.26944862270029	7.04155238286497	7.42972382843233	7.15329863624419	7.5454095691707	7.22176605719048	0.402965299486815	0.0669599630253424	0.275989057001499
Merged-chr1-107447409-2	chr1	107447309	107447509	+	927.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027548, intron 5 of 7)	intron (NM_027548, intron 5 of 7)	24720.0	NM_027548	116872.0	Mm.66015	NM_027548	ENSMUSG00000067001	Serpinb7	4631416M05Rik|megsin|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 7	protein-coding	3.56791090044175	3.28491767891827	3.34317677653882	3.43446489731147	3.25463391228589	3.4582920756935	3.44704109850089	3.9233452423709	0.428734476639028	0.424290829846739	0.71610190673456
Merged-chr1-138136612-4	chr1	138136512	138136712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	38514.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	7.80044429901933	7.98660942263419	7.65884885420882	7.95703151257144	7.71551749000392	7.58602803787527	7.32989941474139	7.32908993196708	-0.466493113528766	0.013678082132919	0.0984022850352778
Merged-chr16-20424982-4	chr16	20424900	20425100	+	919.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176839, intron 1 of 6)	intron (NM_176839, intron 1 of 6)	1394.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	4.17774033014088	4.53284977873018	4.31561084066208	4.40432426510584	4.52391534921385	4.35228530152999	3.89735424299657	4.17587168919717	-0.239807003862528	0.56773816615608	0.808331754798167
Merged-chr14-30620400-4	chr14	30620296	30620496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	5812.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	7.1418162580496	6.82073979634683	6.92624956475658	6.9090039932265	6.99094669270156	7.1542129675476	7.02755165300056	6.73772028749331	0.0487368403969812	0.809397953392745	0.926403976982138
Merged-chr15-6337688-4	chr15	6337587	6337787	+	915.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	37898.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	5.22888451126401	4.87754846226234	4.80921233958446	5.61514006954631	4.59862456084627	4.98525389012094	4.39028210859997	4.5062015820577	-1.11585946566021	0.00461959153660492	0.0448042313126818
Merged-chr5-136929228-3	chr5	136929128	136929328	+	912.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015555, intron 3 of 3)	intron (NR_015555, intron 3 of 3)	10082.0	NR_015555	66752.0	Mm.135764	NR_015555	ENSMUSG00000097908	4933404O12Rik	AW494809	RIKEN cDNA 4933404O12 gene	ncRNA	3.56075745997975	3.54330390980246	3.56121546406857	3.24126094346371	4.16965305081039	4.15346539557687	3.919242745075	4.06731583283091	1.85641999737933	5.40451849613618e-05	0.00121123495603425
Merged-chr19-60818851-4	chr19	60818759	60818959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026437, intron 3 of 8)	intron (NM_026437, intron 3 of 8)	7304.0	NM_001347464	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	7.92446359002435	7.71030709230188	8.07461815268734	7.95219561970776	7.62791818837876	7.7660763401721	7.36788383834347	7.48014852377901	-0.460330151909314	0.0117465190581577	0.0885142367182516
Merged-chr1-172643808-4	chr1	172643684	172643884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H2-int|LTR|ERVL-MaLR	-10810.0	NM_026725	68440.0	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	6.93850913316655	7.79382338016716	6.85309668651578	6.81825653263829	7.56402461602152	7.79979833559942	7.47565238053558	7.15214551671111	0.464656239635987	0.0891545789530946	0.325782171529721
Merged-chr4-137593907-7	chr4	137593806	137594006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347227)	promoter-TSS (NM_001347227)	-266.0	NM_001347227	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	5.82658021579233	5.89546960245194	5.87614708654665	5.54988580820686	6.14926190076183	6.26913645168036	5.69560155505476	6.51068522266563	0.63838400227786	0.0211143445359171	0.132701562642028
Merged-chr2-117299893-4	chr2	117299786	117299986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 5 of 16)	intron (NM_011246, intron 5 of 16)	42991.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	7.12833406164251	7.88612218906018	7.61079396908373	7.10682103615322	7.77418381775945	7.82155818174271	7.58182560802259	7.18541323661791	0.188835136310154	0.445458151714905	0.731480702512456
Merged-chr13-95685921-3	chr13	95685830	95686030	+	975.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 14 of 35)	intron (NM_027711, intron 14 of 35)	-10990.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	4.99144408226594	4.90340430911331	4.90381409321754	4.92136154388369	3.83439283998621	4.08051200096468	4.16519229222757	4.06967812692429	-2.18534302086208	5.46215725153082e-08	2.47795341623144e-06
Merged-chr11-106920815-4	chr11	106920602	106920802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025481)	promoter-TSS (NM_025481)	13.0	NM_025481	66313.0	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	6.2385673556992	6.33551744641798	6.46223161702081	5.6829177628879	6.2269383707741	6.3576544737045	5.96139694461325	5.96474554039801	-0.086748086440508	0.757564071071037	0.90479159536558
Merged-chr2-59184281-4	chr2	59184185	59184385	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	23435.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	5.42110187756288	5.88797798119816	5.59879299515209	5.7042118958886	6.00829497816662	6.14953762852455	5.79534223728322	5.25028779789992	0.290233562927173	0.342638290184429	0.6516462545027
Merged-chr19-32224539-4	chr19	32224440	32224640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 4 of 9)	intron (NM_144792, intron 4 of 9)	-13527.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	5.96752732191242	5.64699053336876	4.90760176063716	5.32521525900574	5.31149531785543	5.12791011182812	4.66784065390254	4.86343477859821	-0.896125864351142	0.018828089410397	0.122838182964496
Merged-chr10-60368064-4	chr10	60367946	60368146	+	793.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159572, intron 5 of 6)	intron (NM_001159572, intron 5 of 6)	21195.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	3.56850163505346	3.64525976684958	3.83744631672065	4.03595547103646	3.90899496740228	3.5585525501795	3.82129345499355	3.83518728038424	-0.020358395589006	0.966542182826027	0.988214341569332
Merged-chr5-3355590-4	chr5	3355508	3355708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	11715.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	6.19231787593595	6.14384745154269	6.33706297336782	5.82521489993637	5.87876950684777	6.36798266174824	5.8878528321051	6.00501518913693	-0.12439880466558	0.638501314132084	0.847180399776876
Merged-chr8-72136391-3	chr8	72136296	72136496	+	858.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001491, intron 1 of 7)	intron (NM_001001491, intron 1 of 7)	1104.0	NM_001001491	326618.0	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	3.38831580895729	3.41594657201557	3.6482581231476	3.27982526417882	3.46277804177657	3.31463209266389	3.48529337589018	3.54912605277264	0.0927454198771738	0.856309103802189	0.945893027699269
Merged-chr11-114727342-4	chr11	114727233	114727433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034878)	promoter-TSS (NM_001034878)	-79.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	5.84098598727407	6.02149202766868	5.09633848429276	5.58882191873504	5.90862134225753	5.7138007466745	5.78950827527864	5.74414497146116	0.186673804762862	0.535529784560304	0.789774671816386
Merged-chr15-8577793-3	chr15	8577665	8577865	+	806.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	133042.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	3.77766443049488	3.315335234717	3.27183305098852	3.1066038984341	3.22381832667218	3.50677197382617	3.53460214386267	3.20684284263881	-0.0373178878400075	0.947756905855604	0.981348536548879
Merged-chr7-127017369-4	chr7	127017258	127017458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030240)	promoter-TSS (NM_030240)	-6.0	NM_030240	67278.0	Mm.345385	NM_030240	ENSMUSG00000107068	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	7.31051697508397	7.38700179161152	7.2480353108866	7.00980054381665	7.56328023430644	7.52936363635567	7.24396474740477	7.10492112291903	0.190834727614308	0.351657871194895	0.658926885876259
Merged-chr8-117328905-3	chr8	117328801	117329001	+	865.31665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-20269.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	3.83563350428327	3.72536416349601	3.73960620590336	3.78257784173426	3.74369839215854	3.57407240620101	3.62087673371801	3.63284699383639	-0.374440875851259	0.417911502706522	0.711558449437884
Merged-chr2-155979481-4	chr2	155979382	155979582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130000, intron 19 of 32)	intron (NM_001130000, intron 19 of 32)	22924.0	NM_177217	16328.0	Mm.288729	NM_008383	ENSMUSG00000038241	Cep250	AW490617|B230210E21Rik|Cep2|Inmp	centrosomal protein 250	protein-coding	5.92496907796799	6.24184168763892	6.03713516259089	6.10394011807208	5.64285432675164	6.07896624873272	6.08814500104733	6.1923068810522	-0.127147497763525	0.621107645250605	0.83769908458794
Merged-chr9-108343577-4	chr9	108343509	108343709	+	812.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4222.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	3.97649989386048	3.68543646653282	3.38888997838147	3.43326318399287	3.66436630404271	4.05684005383906	3.72618184562615	3.73970098930014	0.503447149333711	0.315168106852214	0.627038475150038
Merged-chr15-33083219-4	chr15	33083129	33083329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018755)	promoter-TSS (NM_018755)	100.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	6.47869037139882	6.41643674930034	6.66508563311085	6.6754609875404	6.01243323797717	6.13065438429352	6.47934198185973	6.63131697836803	-0.350673006473121	0.152051960118827	0.435906076000675
Merged-chr4-119125713-4	chr4	119125624	119125824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 2 of 9)	intron (NM_011400, intron 2 of 9)	16979.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	6.69378135641832	6.99527448734904	6.97265814748503	7.15162721244389	7.30950318501528	7.15006150040952	7.60851624000203	7.11597878453452	0.460341477516806	0.0311800836780087	0.17179094172281
Merged-chr2-3475920-3	chr2	3475766	3475966	+	924.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022724)	promoter-TSS (NM_022724)	-880.0	NR_027509	64707.0	Mm.23483	NM_022724	ENSMUSG00000026646	Suv39h2	4930507K23Rik|AA536750|D030054H19Rik|D2Ertd544e|KMT1B	suppressor of variegation 3-9 2	protein-coding	3.57037363636035	3.68011030695354	4.09630922933533	3.18394319264484	3.97790252112846	3.80437642686051	3.61405537075283	3.68156565547159	0.331634799064428	0.540453267678635	0.792791916938885
Merged-chr8-83858081-3	chr8	83857948	83858148	+	683.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-42050.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	2.52228779060419	2.54177139529949	2.6786672478162	2.6339602903962	3.05543842917651	2.99634446237818	3.20402920238684	3.26524323203773	2.4270386431599	0.000309897403324185	0.0052073152198329
Merged-chr12-4195413-4	chr12	4195354	4195554	+	903.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 6 of 21)	intron (NM_001159537, intron 6 of 21)	38511.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	5.21563627964395	4.61226094206531	4.92907186789116	4.94083484762387	4.52101105787729	4.44970048690696	4.57698960553189	4.41583759714726	-0.95069475825235	0.00894344097302519	0.0728525045798764
Merged-chr9-13554947-4	chr9	13554792	13554992	+	980.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65097.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	4.73841257439034	5.02493381485248	4.98649376815819	4.80120604992028	5.05145292102625	4.51372157726251	4.75511596894556	4.65572631509751	-0.232691173576326	0.5095020810221	0.774067760028004
Merged-chr8-3646016-4	chr8	3645919	3646119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-9751.0	NM_001204959	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	6.41749691139653	6.26924742942727	6.46952164418158	6.80133527413841	6.33147774346493	6.30563757733024	6.38580059002554	6.26741820381947	-0.294639834938213	0.210007599148041	0.514484230514723
Merged-chr9-118608718-5	chr9	118608506	118608706	+	989.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	1897.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.94521099615393	5.20956358749513	5.23193525414422	5.56117730751826	4.84877685083949	5.30932701373622	5.46417012464032	5.84795538476354	0.253743729464767	0.482576028693553	0.757376119471224
Merged-chr2-22799802-4	chr2	22799697	22799897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	25470.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	6.99797122202052	6.98931651434731	6.98698082297408	6.98118580038972	6.73367331821284	6.81259156075725	6.95166618481525	6.49336532799634	-0.324293485577398	0.106794780403925	0.360348218742401
Merged-chr13-3538668-4	chr13	3538512	3538712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	537.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	6.05012416757523	5.57750318106796	6.27391637973309	5.88359456282271	5.72888345506851	5.8529695691371	5.77558075889551	6.16310542883084	-0.119809556287088	0.667197000615559	0.862274690130043
Merged-chr17-10599214-3	chr17	10599118	10599318	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	143002.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	3.84589847854115	3.70085076533684	4.40315321123797	4.59932483913408	3.61935472003507	3.85637886419876	3.83067114105391	3.67318070151094	-1.26198856031604	0.014081095204696	0.100398505016033
Merged-chr10-42171185-3	chr10	42171077	42171277	+	840.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105565.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	3.65625641954666	3.6543551175987	3.75768892859273	3.93987009666653	3.66265720869449	3.66258702968317	3.47645072389797	3.48702231110044	-0.593891111597937	0.220924218334054	0.52902341133927
Merged-chr9-78429846-3	chr9	78429732	78429932	+	641.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_173386)	TTS (NM_173386)	13405.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	2.9984951132974	2.95275124696248	3.41365414613288	3.15123179630858	2.93939026110534	2.83386438189152	3.04722296571265	2.72682868855387	-1.04966896421402	0.0991914121383845	0.345383554946672
Merged-chr7-43669466-7	chr7	43669348	43669548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2583.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	4.99733522726695	5.84120679274148	5.30545779747292	5.36117981139431	5.78770688804031	6.03054222717832	6.0675897351956	6.1310109505089	0.968166354200239	0.00128274195621636	0.0164393751713223
Merged-chr12-40545748-2	chr12	40545648	40545848	+	903.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	99695.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	3.23320381258941	3.3854549964097	3.23358241941818	3.15129245433136	3.49043834278713	3.7880274688379	3.45510181758977	3.46729589914692	1.05775602921779	0.0388344341450606	0.197951603266347
Merged-chr15-60854384-4	chr15	60854286	60854486	+	938.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29306.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	4.98224629564228	4.79252251202534	5.26185676694903	5.37587870043293	5.04815349588332	4.66548864725136	4.88839669863385	4.97971673258742	-0.438209807581572	0.203222969860575	0.505971099783338
Merged-chr6-125587289-3	chr6	125587180	125587380	+	627.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 6 of 51)	intron (NM_011708, intron 6 of 51)	34332.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	3.83489842549044	3.81732669512507	3.83544928263381	3.82151597704393	3.72172830819831	3.66977590034892	3.76815087010259	4.29661389921426	0.174288231101388	0.710107876657277	0.883989795945789
Merged-chr2-71598771-7	chr2	71598610	71598810	+	868.9442140000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-51956.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	3.34309335600126	3.11695196634074	2.95015483244538	2.98005260671633	3.50508056783041	3.45952085058591	3.43777349063234	3.64357590688842	1.51457849611757	0.00494957845225478	0.0471943797257927
Merged-chr14-30715162-2	chr14	30715059	30715259	+	987.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001166532)	promoter-TSS (NM_001166532)	-8.0	NM_001166531	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	4.90762761420644	4.62631492368989	4.6670133706282	4.6087909074696	4.52023671044303	4.59204839432232	4.64506687000037	4.36598261710344	-0.363578594500707	0.307838792325076	0.620200289337036
Merged-chr8-11008993-4	chr8	11008877	11009077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081212)	promoter-TSS (NM_001081212)	-547.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	8.80971143403149	8.84502844680357	8.76587847878852	8.8382588578044	8.88269208866467	8.99697553381153	9.00587679436249	8.89514034151954	0.159943514831111	0.246428169344483	0.557673692994975
Merged-chr3-79161310-4	chr3	79161203	79161403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15428.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	6.10836806718346	6.55345558101379	6.20440718433496	6.02662355644303	5.62793113505547	5.87126233084681	5.86470792789881	5.41560822195426	-0.844717322615701	0.00196934338857353	0.0231553200799755
Merged-chr19-47224954-4	chr19	47224876	47225076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021360, intron 1 of 5)	ORR1E|LTR|ERVL-MaLR	-3867.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	6.80222964294726	7.06198862837414	6.66543886301925	6.86027691256769	6.91788741387167	7.20517813008685	7.09766485143229	7.13962409696309	0.316704162734108	0.115240622341538	0.375535814673078
Merged-chr2-148444992-3	chr2	148444873	148445073	+	771.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1438.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	3.91438697106495	3.31823126723159	3.95983250179737	3.97940182828694	3.69078140858093	3.60237744801048	3.53476824221716	4.00053876892775	-0.302235706480272	0.564727666514667	0.806932336425425
Merged-chr5-139505298-4	chr5	139505224	139505424	+	846.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18427.0	NR_040701	74973.0	Mm.141282	NR_040701	ENSMUSG00000106056	4930500L23Rik	-	RIKEN cDNA 4930500L23 gene	ncRNA	3.81380401647332	4.03560146385505	3.37805221229393	3.69751861399979	4.07318751629143	4.18111112121456	3.99370896001745	3.96261640569776	0.836067983914348	0.0754400192339824	0.296604515309872
Merged-chr3-88410059-4	chr3	88409970	88410170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178696)	TTS (NM_178696)	327.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	6.99045969564969	7.21416062084995	6.63792032224327	6.95033037210024	7.20661594055438	7.39128494252563	7.1678847701214	7.24159887759841	0.389303273803582	0.0558778714067339	0.247408000053491
Merged-chr9-63568501-2	chr9	63568401	63568601	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030068, intron 5 of 21)	intron (NM_030068, intron 5 of 21)	33992.0	NM_030068	78250.0	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	2.51937118826916	2.37372737259656	2.45929355423317	2.22500561294756	2.32331611513751	2.3605410454936	2.25272055940847	2.25804114977949	-0.558176446717649	0.452365257984923	0.736732792543389
Merged-chr17-12210900-3	chr17	12210788	12210988	+	924.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026644, intron 5 of 8)	intron (NM_026644, intron 5 of 8)	91604.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	3.75165744276892	3.73739947567799	3.64657675210229	3.82982680126241	3.70265245478043	3.64769304439802	3.45848763563614	4.02202468436946	-0.0725369965100231	0.880118623954742	0.955085430151155
Merged-chr2-119338045-4	chr2	119337996	119338196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11899.0	NR_030683	100043609.0	Mm.185068	NR_030683	ENSMUSG00000074912	Gm14207	Dll4	predicted gene 14207	ncRNA	6.96490583849173	6.81218349126638	6.68258588593149	6.71183168750259	6.5869304872527	6.91809911842229	6.95466455780053	6.11526922137877	-0.159223119941406	0.520929543614995	0.78107608663995
Merged-chr15-66846120-4	chr15	66846013	66846213	+	952.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 45 of 47)	intron (NM_009375, intron 45 of 47)	-14284.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	4.29865221220094	4.5649857201031	5.46643671510215	4.73395411333683	4.81862519382672	4.26311776306875	5.07535547060913	4.24315718720196	-0.387328898085777	0.418524037501764	0.711949966908158
Merged-chr8-13632563-1	chr8	13632463	13632663	+	775.0	f0_balb.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	45024.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	3.39640487020907	3.12364150591464	3.34287775486342	3.73669753281353	3.24992439951654	3.21042901870949	3.1553627376279	3.22594783043412	-0.807008848082148	0.159020733278903	0.446219364628123
Merged-chr19-4305785-4	chr19	4305622	4305822	+	775.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130863, intron 1 of 21)	CpG	500.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	3.33742370238469	3.27273533155082	3.64813420333138	3.18728984696236	3.35823899432767	3.32816125719869	3.26632626489703	3.59919233723641	0.106386605031123	0.843243537579438	0.940459539910433
Merged-chr11-115473819-4	chr11	115473699	115473899	+	967.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001080934, exon 4 of 4)	3' UTR (NM_001080934, exon 4 of 4)	-1868.0	NM_177778	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	5.02178576910587	5.31832529453889	4.95332145903116	5.14259231178489	4.78899889027403	5.05516817196015	4.99826865915107	4.79921776882387	-0.417558043784701	0.192282685834878	0.491838246913812
Merged-chr10-39449306-4	chr10	39449206	39449406	+	919.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	79507.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	5.13536551849554	5.20885672546007	5.8851472198554	5.72830963250918	4.46503932108242	4.6767586572322	4.6592850261519	4.53534020183066	-1.88116731766717	2.09552259677701e-07	8.40322269949245e-06
Merged-chr13-120300232-3	chr13	120300130	120300330	+	942.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037925)	promoter-TSS (NM_001037925)	-162.0	NM_001037925	625360.0	Mm.327506	NM_001037925	ENSMUSG00000094796	BC147527	-	cDNA sequence BC147527	protein-coding	3.64715859845291	3.07186083628018	3.96620691528501	4.0867133359213	3.39462601274925	3.5389589321487	3.40999829256494	3.48057197961365	-0.939974495134684	0.115627050468216	0.376292608394939
Merged-chr15-58797464-4	chr15	58797371	58797571	+	929.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175212, intron 1 of 6)	intron (NM_175212, intron 1 of 6)	25956.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	4.32423094139271	4.49256877010952	4.27536082103569	4.47651885082801	4.60432668211072	4.50382221057727	4.44288960777047	5.24702359985914	0.740520320308544	0.0649254725020597	0.271022736067102
Merged-chr2-91081098-7	chr2	91080989	91081189	+	951.8095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10774.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	3.80673486537733	3.56887476088627	3.57705393271103	4.05458693310988	4.16615147380914	4.12585718662689	3.93957389613785	3.80512246390178	0.645739029243087	0.181591738182379	0.47824687501256
Merged-chr8-111653693-4	chr8	111653607	111653807	+	783.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358993, intron 1 of 3)	intron (NM_001358993, intron 1 of 3)	10264.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	4.59396510264903	4.59463843496991	4.02520539733746	3.98189910655081	4.39654002444983	4.20547108413686	4.60681674542405	4.02294409009412	0.00693086845931695	0.987695091013937	0.995315979319888
Merged-chr17-46711437-4	chr17	46711343	46711543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145488)	promoter-TSS (NM_145488)	-20.0	NM_145488	224824.0	Mm.299399	NM_145488	ENSMUSG00000002763	Pex6	AI132582|D130055I09Rik|mKIAA4177	peroxisomal biogenesis factor 6	protein-coding	6.25934730715094	6.54955551179424	6.29931935120468	6.47935780389881	6.6480218192022	6.56746141825342	6.22847877417159	6.40465195963347	0.0997289257231322	0.661148782938893	0.859233242450522
Merged-chr15-85867854-3	chr15	85867747	85867947	+	884.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013882, intron 5 of 10)	intron (NM_013882, intron 5 of 10)	7901.0	NM_013882	29870.0	Mm.20858	NM_013882	ENSMUSG00000022385	Gtse1	B99|Gtse-1	G two S phase expressed protein 1	protein-coding	3.97518707705734	3.76952612460884	4.14080342365406	3.73516785011105	3.52141085613889	3.5524676545453	3.86733513316844	3.62031394736773	-0.787529366071592	0.104774727846824	0.355998583309184
Merged-chr12-98383366-2	chr12	98383247	98383447	+	788.5	f0_balb.idr|f0_c57.idr	Intergenic	RLTR9A2|LTR|ERVK	114712.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	3.66092944279543	3.37826917044305	3.49248797456438	3.72345903574868	3.96980604282838	3.66738266611983	3.74696978898401	3.71104419061126	0.620914689391081	0.201372092799646	0.503723921749641
Merged-chr5-136086360-7	chr5	136086271	136086471	+	958.9761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	2455.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	3.18569335906796	3.4027480341226	3.43204345927932	3.12914545535796	3.58530547044628	3.70848356604933	3.41856293465641	3.53760363550802	0.968581118555271	0.0585903685972957	0.254665598826753
Merged-chr4-149171696-4	chr4	149171576	149171776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4971.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	6.00780624271749	6.24852868083705	6.05359268475909	6.16055666025776	6.36629743015833	6.31509327362525	6.33395084336309	6.56746503986218	0.41150216318194	0.0670897588311976	0.276289165924891
Merged-chr5-33335457-4	chr5	33335343	33335543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021500)	promoter-TSS (NM_021500)	-129.0	NM_021500	59003.0	Mm.138617	NM_021500	ENSMUSG00000079562	Maea	1110030D19Rik|EMP|Gid9	macrophage erythroblast attacher	protein-coding	8.3393324661834	8.48927228764625	8.07543567365526	8.21217276775986	8.43343625283658	8.31853013004593	8.5689132073124	8.18542067166203	0.124579259574571	0.473946757298798	0.7514881877831
Merged-chr12-85959606-4	chr12	85959491	85959691	+	975.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	119450.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	4.19016703521449	4.67029918556487	4.51295744050602	4.53363933640556	4.91226242221991	4.26500389681683	4.77923610927099	4.02252552501016	0.145459446036977	0.740995972393854	0.898139463026673
Merged-chr4-115643298-4	chr4	115643236	115643436	+	867.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007823, intron 1 of 11)	intron (NM_007823, intron 1 of 11)	4369.0	NM_007823	13120.0	Mm.1840	NM_007823	ENSMUSG00000028713	Cyp4b1	-	cytochrome P450, family 4, subfamily b, polypeptide 1	protein-coding	3.33051300742109	3.21584861611009	3.4956483892748	3.38415381707823	3.07927988781717	3.25457203825739	3.66934806340052	3.49359027483545	0.104913831968091	0.849535074331074	0.943134322012189
Merged-chr7-19360546-4	chr7	19360449	19360649	+	941.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001010836)	promoter-TSS (NM_001010836)	-667.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	4.31771731618318	4.09798400096835	4.44368281913229	3.95884235892871	4.81306212631526	4.09354934151921	4.2089759658034	4.47986502453852	0.562143994449799	0.194968685131627	0.495702101692531
Merged-chr11-113811394-3	chr11	113811291	113811491	+	906.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172800, intron 36 of 44)	intron (NM_172800, intron 36 of 44)	-59576.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	3.08562772644623	2.92835396482641	2.9468996667136	2.75741168800796	3.64964987080279	3.38754648878096	3.46740423685792	3.43137811142455	2.2607972831479	5.13539720847287e-05	0.00115711439665049
Merged-chr14-30596012-7	chr14	30595941	30596141	+	882.5238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 17 of 17)	intron (NM_011103, intron 17 of 17)	14269.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	3.76236426858476	3.47572258166092	3.45034760998532	3.07796449258051	3.63075277566428	3.73527534511127	3.60084116286323	3.50602296340386	0.54804835156117	0.304213287571609	0.616887791908108
Merged-chr6-122820632-5	chr6	122820535	122820735	+	872.64447	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021899, exon 1 of 11)	5' UTR (NM_021899, exon 1 of 11)	451.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	3.68120423460012	4.05687595747628	3.96411694466794	3.85387916083343	4.525962100331	4.18680566248895	3.89630803338655	4.15052852233538	0.846453039771477	0.0568031094337091	0.24965354044645
Merged-chr17-36083599-3	chr17	36083501	36083701	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008199, intron 2 of 5)	CpG-6344	648.0	NM_008199	14963.0	Mm.477808	NM_008199	ENSMUSG00000073406	H2-Bl	H2-B1|H2-Bl-like	histocompatibility 2, blastocyst	protein-coding	3.37155461528365	3.25428191257412	3.45565146312937	2.48734834950431	5.29437891402792	5.33036356819566	4.91278004607517	4.90711991500882	7.93919273772008	5.34868932507615e-22	2.32142900896094e-19
Merged-chr4-119663198-4	chr4	119663100	119663300	+	909.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-4255.0	NM_008191	14916.0	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	5.26100968645493	5.73301443910616	5.45644099153421	5.45590564336911	4.55636508207609	4.75094810403628	5.34940846482054	4.79346402553733	-1.12343973681799	0.00134613932908058	0.0171223822917489
Merged-chr4-66792298-3	chr4	66792229	66792429	+	922.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35222.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	3.85291723213221	3.78020026786548	4.02955253997444	4.06508574737597	3.46183745653242	3.38129682603349	3.78911610957283	3.46968963474935	-1.27155691433404	0.0106818284741969	0.0828417813210784
Merged-chr9-88720372-5	chr9	88720205	88720405	+	903.0399779999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128601)	promoter-TSS (NM_001128601)	-507.0	NM_001128601	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	4.33465584779844	4.52266704701907	5.49434849255719	2.95448700519772	5.01962260634232	4.88611894218387	5.30336497972996	4.92284583443465	0.686853206142699	0.507884353339757	0.773128176102366
Merged-chr8-125531844-4	chr8	125531739	125531939	+	928.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	ORR1E|LTR|ERVL-MaLR	38024.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	4.60195943157937	4.9327509886683	4.68099492983507	4.76018610044408	4.48994632833371	4.69369448254851	4.49895065282864	4.4726922685657	-0.471112891266778	0.180806114750455	0.477199690082044
Merged-chr1-162740569-4	chr1	162740475	162740675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081290)	promoter-TSS (NM_001081290)	-19.0	NM_001081290	226562.0	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	7.8315189865828	7.66601084318619	7.25263475028186	7.71365725588911	8.11476507458839	8.25830871800078	8.25350582022133	8.06270699375237	0.692607703833719	0.000181702020572564	0.00335582981897626
Merged-chr6-37842958-4	chr6	37842880	37843080	+	953.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27831.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	4.48942596879999	4.42600067931867	4.74147709951396	5.08980096351118	4.56397059421574	4.75574442798499	4.8615512866967	5.07061862938404	0.176988717284668	0.649152083426296	0.852572074437233
Merged-chr10-80932383-4	chr10	80932295	80932495	+	960.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008655)	TTS (NM_008655)	2304.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	4.68097853856779	5.11934277672878	4.87564197492079	4.32987174553337	4.93640325223095	5.11822926187551	4.88731120364117	4.94230917504558	0.407920892015806	0.266944739364407	0.578582337893211
Merged-chr4-102944518-3	chr4	102944408	102944608	+	969.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285859, intron 17 of 23)	intron (NM_001285859, intron 17 of 23)	-41871.0	NM_001163767	67344.0	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	3.89305871546397	3.96254913008775	4.33546199415524	4.55579184166885	3.95649468546277	3.71848694984902	3.76924625437877	3.89140180280393	-1.04573741763445	0.0277651179439498	0.159147473838976
Merged-chr5-123884620-4	chr5	123884529	123884729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4609.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	6.81955139117241	6.92686253386521	6.47737593685085	6.47066034789344	6.95440638882303	6.8376032836302	6.38955795037635	7.09593962396198	0.232650406013187	0.340802430610305	0.64989490965976
Merged-chr15-27466534-4	chr15	27466413	27466613	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020332)	promoter-TSS (NM_020332)	-164.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	6.03970063643059	5.91104384387345	5.59640358229029	6.12098107951073	5.75557257922783	5.56373377939431	5.92888730748865	5.38000805963574	-0.431688525799971	0.125292206240811	0.392888406890818
Merged-chr11-74494103-2	chr11	74494003	74494203	+	769.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	96055.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	3.50070663615321	3.27178039508472	3.1487480369623	3.1797627464273	3.52372876976631	3.45102659168775	3.26533290120789	3.64445759465183	0.711241043266214	0.176557928955647	0.471696597404882
Merged-chr2-32566892-3	chr2	32566778	32566978	+	788.43335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153560, intron 10 of 10)	intron (NM_153560, intron 10 of 10)	-3980.0	NM_010073	13481.0	Mm.22001	NM_010073	ENSMUSG00000026810	Dpm2	AW557993|R75484	dolichol-phosphate (beta-D) mannosyltransferase 2	protein-coding	3.25537287922932	3.57415672937177	3.19027472712518	3.20696157123895	3.58691902763292	3.6056917678125	3.42145597301855	3.59007942871107	0.817011149297036	0.112907752742541	0.371420623567672
Merged-chr1-36003981-4	chr1	36003867	36004067	+	768.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64433.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	3.83941165718721	3.88159450916299	4.5100360592137	4.31287310181071	3.98207993418258	3.84533163165762	3.82483529168673	3.89166487622504	-0.752328027984559	0.106406271900417	0.359565705829843
Merged-chr13-113490694-4	chr13	113490598	113490798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	12146.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	7.23136172604575	7.02574436265556	7.52135439331605	7.32970417313197	7.1534430836975	6.88055870370619	7.492738106316	6.98990381534533	-0.184077852716355	0.401418434638349	0.699015960008463
Merged-chr7-19316538-4	chr7	19316426	19316626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6481.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	8.3561912024643	7.8235014601737	8.84708128004078	8.80773163257704	8.20802671630702	8.07243245238793	8.68762631405434	8.64672829521828	-0.117205358960079	0.641174919844031	0.848625403955452
Merged-chr3-135423342-4	chr3	135423237	135423437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025902)	promoter-TSS (NM_025902)	96.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	7.69789829046296	7.95697693580289	8.50946966194614	7.65767956016063	7.67615096779256	7.75379353479258	7.55698267236576	7.88054844240091	-0.359684405444771	0.115189124879237	0.375505100872834
Merged-chr8-84928786-4	chr8	84928701	84928901	+	829.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019945, intron 6 of 25)	intron (NM_019945, intron 6 of 25)	8552.0	NM_019945	56527.0	Mm.154614	NM_019945	ENSMUSG00000053693	Mast1	9430008B02Rik|SAST|SAST170	microtubule associated serine/threonine kinase 1	protein-coding	3.43514619017174	3.66332024827648	3.49706277086819	3.63284631570696	3.97434158062527	3.78381604836337	3.65141229588019	3.76538637585772	0.718289308680273	0.129266228783452	0.40014964332336
Merged-chr4-141147540-4	chr4	141147442	141147642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172518)	promoter-TSS (NM_172518)	-380.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	6.33938504367581	6.3508271539818	6.22367959041869	6.23127117984128	6.62523189109281	6.82670975385212	6.41442815681944	6.50932334518823	0.468074953063631	0.0320480672889979	0.174933260617082
Merged-chr2-26907361-4	chr2	26907295	26907495	+	868.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011513, exon 3 of 3)	3' UTR (NM_011513, exon 3 of 3)	3247.0	NM_011513	20933.0	Mm.397932	NM_011513	ENSMUSG00000015776	Med22	AW212655|AW558812|Surf-5|Surf5	mediator complex subunit 22	protein-coding	3.96915233800955	4.41965379845173	3.81278447842057	3.61359542984552	3.90709539879715	4.0937285240799	3.85142071022898	4.10714133280438	0.0191377806828019	0.968296246596719	0.988694268692349
Merged-chr14-51095728-6	chr14	51095547	51095747	+	890.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007447)	promoter-TSS (NM_007447)	-353.0	NM_007447	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	3.46179096233037	3.41672578917696	3.24366399854614	3.44320072353159	3.40847144529195	3.15907599919131	3.28993621032596	3.18131714883459	-0.460695901856653	0.390733268110943	0.690674818832488
Merged-chr11-50107405-6	chr11	50107239	50107439	+	859.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 7 of 7)	intron (NM_001290750, intron 7 of 7)	-24021.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	3.37171143164989	3.39970460676779	3.42811807171235	3.73391103484009	3.47416010861379	3.22978773646736	3.24168852825695	3.47980391113209	-0.476136231853347	0.376870850139006	0.679494401442451
Merged-chr1-170967704-4	chr1	170967602	170967802	+	889.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077189, intron 3 of 7)	intron (NM_001077189, intron 3 of 7)	8369.0	NM_010187	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	4.2794904341498	4.90718266700902	4.83918251931085	4.74732308525518	4.39822630168396	4.40906791899457	4.3105096121188	4.50592635727564	-0.697876462318976	0.0675834748528088	0.277487549408634
Merged-chr2-35462620-6	chr2	35462472	35462672	+	870.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1123.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	3.34026788860915	3.12624047943173	3.28232074473761	3.59396409003326	3.44476798042725	3.4524976052828	3.38359295077811	3.39478174068304	0.196968461595093	0.715565322198888	0.886319285643591
Merged-chr15-81142355-4	chr15	81142248	81142448	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 1 of 13)	intron (NM_001082536, intron 1 of 13)	-37301.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	5.84317262758179	6.06576892064105	5.12999256542766	5.54203088184248	5.67956461165822	5.38479293063711	5.60185902162127	5.65200135263529	-0.170565420221838	0.587331179571867	0.819124282985793
Merged-chr10-39267155-4	chr10	39267032	39267232	+	980.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102667.0	NM_001122892	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	5.27084608375213	5.19549391876097	5.18530931258324	5.36854651651279	4.73011672302809	4.62374216547907	5.002035054395	4.76156930819955	-0.939822839590578	0.00331804047346012	0.0345638523138325
Merged-chr12-58538493-4	chr12	58538398	58538598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-269240.0	NM_025809	66864.0	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding	7.10524999121615	6.72950189525135	7.41292023790556	7.33255816817625	6.4020780783412	6.8926593811633	6.53541436821638	6.58139090265136	-0.795102402059422	0.000834883053588175	0.0116407719630466
Merged-chr1-170845899-4	chr1	170845793	170845993	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 4 of 15)	RMER4B|LTR|ERVK	21878.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	4.98685581822224	4.93259594226284	4.60789684497341	4.92638027624593	4.92773449717076	4.90886966074031	4.86177608629185	4.88183478709621	0.0381223839085496	0.906534621959243	0.965374636270914
Merged-chr2-71581052-7	chr2	71580966	71581166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-34312.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	5.10765947732967	5.01639230995741	5.07606286276366	5.31981672921108	4.61170133757281	4.91864443001129	5.14544714287121	5.19757010774738	-0.323866426553881	0.335351005566795	0.645744602332988
Merged-chr1-16505108-4	chr1	16505000	16505200	+	886.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347044, intron 4 of 13)	RMER1C|Other|Other	14015.0	NM_001347044	29819.0	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen double-stranded RNA binding protein 2	protein-coding	4.357686116758	4.41087069737463	4.65079299269703	5.23473987178481	4.0655565747635	4.28501251986349	4.55229158291567	4.6098179917935	-0.754036686611169	0.0896766647364425	0.326969333023012
Merged-chr9-32516129-2	chr9	32516029	32516229	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	25323.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	3.46629297104429	3.75238846204313	3.78458987444523	3.71973865717318	3.49975257316351	3.58141839990235	3.67191323901241	3.5796412007565	-0.342634722639101	0.475186969166998	0.752111404319515
Merged-chr4-15265699-4	chr4	15265618	15265818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181401)	promoter-TSS (NM_181401)	-102.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	8.19995289476618	8.15287520949555	8.18936283511915	8.32700418982147	8.03694669842994	8.07089194834019	8.28105784275389	8.219389594865	-0.0893851609806463	0.573902669986643	0.811973307930812
Merged-chr13-55696207-3	chr13	55696116	55696316	+	928.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181278, intron 1 of 1)	B4A|SINE|B4	3092.0	NM_181278	78521.0	Mm.28449	NM_181278	ENSMUSG00000045767	B230219D22Rik	AA119856|D530037I19Rik	RIKEN cDNA B230219D22 gene	protein-coding	3.26225004748139	3.48420430433017	3.19081150701685	2.81891988843435	4.06857203939654	4.04435627436745	3.76424294751591	3.73081805665053	2.39671529895138	1.80854201233698e-05	0.00046692133440745
Merged-chr1-84284597-4	chr1	84284508	84284708	+	958.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003948)	promoter-TSS (NM_001003948)	37.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	5.17891538857253	4.79048578728299	5.38122686326934	5.1836249967161	5.10588497380279	5.1885727898314	5.30017870949946	4.89868451453368	-0.034077705209375	0.915879902327916	0.968870427247849
Merged-chr3-75203018-4	chr3	75202951	75203151	+	905.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-59279.0	NM_172515	213234.0	Mm.80075	NM_172515	ENSMUSG00000034151	Zbbx	4931432L23	zinc finger, B-box domain containing	protein-coding	3.91432267703727	3.86617728508523	3.91485376036061	4.50706151900823	4.31292567237298	4.24144726393669	4.27139849358616	3.96608826082476	0.258314967395619	0.580903110327933	0.816043625532665
Merged-chr10-60745105-4	chr10	60744983	60745183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	7699.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	5.65043931239023	5.14018282932863	5.446819397761	5.05598714152946	5.11053241018994	5.50588469661061	5.71288667945393	5.41492496874274	0.207563041113577	0.520607622006166	0.780840127415911
Merged-chr10-96334822-4	chr10	96334741	96334941	+	990.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108634.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	5.5282316626779	5.58904293359331	5.84929503130101	5.74153952117609	4.96331030151515	5.08589506610526	5.07433643892095	5.23367155074012	-1.07914598176065	0.00019326662108937	0.00353547284053464
Merged-chr17-64600860-7	chr17	64600693	64600893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008549)	promoter-TSS (NM_008549)	-856.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	7.62221596629203	7.79602221799733	8.41720503839952	7.69628046161734	7.97038360314727	8.11323172772371	8.09313739406193	7.94435223131667	0.144352280510361	0.500928919399188	0.769036743031551
Merged-chr2-135474362-4	chr2	135474269	135474469	+	965.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019677, exon 33 of 33)	3' UTR (NM_019677, exon 33 of 33)	108851.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	4.88508336695869	5.15188648946608	5.43010224451265	5.53993615549944	5.2433015318993	5.29504750693942	5.67366695861097	5.53240344457003	0.26836714076395	0.405949484412998	0.702479234459747
Merged-chr12-77100615-3	chr12	77100521	77100721	+	780.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137483.0	NM_001252614	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	3.5164074282215	3.79714172204051	3.56738441016673	3.38007004503738	3.17380960091561	3.27646502994582	3.28080171526867	3.16281862896241	-1.26347633053609	0.0214422879911782	0.134085319242654
Merged-chr9-123923269-4	chr9	123923193	123923393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	45399.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	5.46235176960331	5.20922081649244	5.36900144603948	5.44365956862515	6.1222028957872	5.70043450708208	5.82234903470947	6.32467481423923	1.05888968009559	0.000151410312370526	0.00287683343076517
Merged-chr19-61004407-3	chr19	61004327	61004527	+	712.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 2 of 15)	intron (NM_018869, intron 2 of 15)	114678.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	3.50795108646241	3.13765241091208	3.41575436223168	3.53610604008848	2.78518748738756	2.84351102861218	2.9481311633409	2.81210829660681	-2.59484917070607	0.000140502624449576	0.00270073894293718
Merged-chr1-13342825-3	chr1	13342746	13342946	+	595.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	29583.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	3.44613639323959	3.50382496635543	3.389956047739	3.46107351577996	3.24551183762209	3.44402515438044	3.68064624246763	3.38819519028792	-0.0273987104623615	0.95738738517556	0.984815156534365
Merged-chr3-89773947-1	chr3	89773847	89774047	+	1000.0	f0_balb.idr	promoter-TSS (NR_130957)	promoter-TSS (NR_130957)	338.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	4.86802793809028	4.43925628695121	4.97193387079712	4.91931552346417	4.96212062292143	4.63104706707996	4.84549541719093	5.15210507129702	0.193387783042999	0.585330150833903	0.818084247493924
Merged-chr5-24030785-4	chr5	24030680	24030880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053090)	promoter-TSS (NM_053090)	-90.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	8.4332622536741	8.43763908645284	8.54730669669316	8.57019362931327	8.46801819324977	8.45976359496295	8.44068883049746	8.20513341754442	-0.128222029117351	0.404663663286635	0.701732715768529
Merged-chr10-96332974-4	chr10	96332875	96333075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	106768.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	7.98139923409057	7.92094336135572	8.39735233737014	8.23385135940984	8.10584203411621	8.07998609538893	8.44067570999414	8.11044688867476	0.0557696217380971	0.764881124235284	0.907890565510085
Merged-chr6-134461345-4	chr6	134461219	134461419	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 17 of 22)	intron (NM_008514, intron 17 of 22)	46891.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	6.37791396072259	6.63698501687327	6.72122502479594	6.84451590045938	5.30132454094437	5.39173603365979	5.49502430231428	5.1971340319508	-2.1077816701868	8.25896565274183e-16	1.51511576339307e-13
Merged-chr2-121008403-4	chr2	121008296	121008496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010761)	promoter-TSS (NM_010761)	-12.0	NM_010761	17151.0	Mm.7838	NM_010761	ENSMUSG00000023572	Ccndbp1	AU022347|DIP1|GCIP|Maid|SECC-8|SSEC-8	cyclin D-type binding-protein 1	protein-coding	6.4572568403729	6.50799010617492	5.85012370566676	6.25646372320228	6.46412449029178	6.51209972185416	6.35721787371386	6.58029140167302	0.275978514617334	0.252110922249228	0.563475471309002
Merged-chr5-139252234-4	chr5	139252122	139252322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026269)	promoter-TSS (NM_026269)	-102.0	NM_001359238	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	7.76329805106975	7.97138138893323	7.27527795344523	7.12703759057939	8.04144440952968	8.27521850539586	7.67115991917633	7.51972430049282	0.437438009759476	0.0873191523035418	0.322361424893333
Merged-chr9-77921117-4	chr9	77921019	77921219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	3754.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	4.89857087388377	5.11803583722237	4.55439120603099	4.94135840220362	5.41103327962954	4.69010601910693	5.31659102348163	5.4667058969734	0.684902156381207	0.0539978360166289	0.242645957691138
Merged-chr10-19933818-4	chr10	19933649	19933849	+	998.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008580)	promoter-TSS (NM_008580)	-777.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	5.25630222236772	5.78700232214365	5.37168437039095	4.92073381213445	5.03686041572313	4.6971953916979	4.93065116784078	5.2831061122491	-0.668801170496905	0.0656519415342535	0.272782648208898
Merged-chr2-3630990-4	chr2	3630882	3631082	+	776.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82476.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	4.41677688045778	4.3021645071458	4.24458754027351	4.45378027011069	4.2121828144662	4.22229402650422	4.43655964543394	4.33127269704187	-0.154317206126931	0.686436880689924	0.871787672169905
Merged-chr13-54819697-4	chr13	54819683	54819883	+	906.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30378.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	3.56230684680074	3.72188113320099	3.89182760793855	3.34656387433428	3.39927588757646	3.50649548783746	3.54833086359183	3.26130971944859	-0.679472462357918	0.200897254491688	0.503065263001114
Merged-chr2-35475086-4	chr2	35474976	35475176	+	893.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-13627.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	4.39894811965747	4.37810577163033	4.30339634649121	4.95274263695606	4.54775989946148	4.74599968745051	4.46900511470129	4.92160762231549	0.255650610264164	0.531934998713099	0.787748963171131
Merged-chr11-103102180-4	chr11	103102061	103102261	+	910.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152813)	promoter-TSS (NM_152813)	473.0	NM_025988	67131.0	Mm.390367	NM_025988	ENSMUSG00000056938	Acbd4	2010009P05Rik|2010015A21Rik|AI849317	acyl-Coenzyme A binding domain containing 4	protein-coding	4.45048688899932	4.22259463401247	4.23568695326778	4.11843443691587	4.27374070522499	4.65947154103646	4.06998454677833	4.48727919947252	0.319012420071934	0.429710306727363	0.7205774241418
Merged-chr10-119240161-4	chr10	119240064	119240264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027994)	promoter-TSS (NM_027994)	-109.0	NM_027994	71902.0	Mm.203965	NM_027994	ENSMUSG00000020114	Cand1	2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829	cullin associated and neddylation disassociated 1	protein-coding	8.83683580183556	8.91340708658526	8.76873799021798	8.8447664572878	9.07285389495467	9.12292278903293	8.93368290359571	8.82867731013318	0.190132526730927	0.196242880917538	0.497236651745317
Merged-chr8-46850711-3	chr8	46850617	46850817	+	721.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110972.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	3.67726488976295	3.63146969687182	3.92061724472522	3.57553949423837	3.43727813106307	3.68411911344535	3.60898011533114	4.00335340853877	-0.0176616414036639	0.97152621437869	0.989698355367312
Merged-chr8-72487184-4	chr8	72487081	72487281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177766, intron 4 of 5)	intron (NM_177766, intron 4 of 5)	5433.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	5.49088274492638	5.30841478074889	5.26039684638047	5.30083799849908	5.4838023384248	5.40355230480774	5.35463127464948	5.28810328054555	0.0913506793797624	0.743770236556029	0.899073282101141
Merged-chr19-55702936-4	chr19	55702828	55703028	+	922.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045318)	promoter-TSS (NR_045318)	-724.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	4.55593163922915	4.54070134405651	4.63739281470511	4.68025147398549	4.58979127079729	4.84707326656116	4.53591323649374	4.67285659944019	0.109287669840146	0.752944157814706	0.902713603306311
Merged-chr3-79177323-4	chr3	79177190	79177390	+	963.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31415.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	5.0075199274443	4.77840450794692	4.28632479907637	4.27077019613448	5.24915322124416	5.21288319360606	5.1065244896908	4.90325939470345	1.03876208203709	0.00543223238130766	0.0505071913646342
Merged-chr19-42090296-4	chr19	42090171	42090371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145501)	promoter-TSS (NM_145501)	-164.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	9.02842527861656	9.13541367241026	9.04366132206749	8.90869817096226	8.92803967633037	9.29502375645959	9.23508305363716	9.02073583892333	0.119269445358393	0.445520141935048	0.731510070411548
Merged-chr17-5770458-4	chr17	5770339	5770539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28218.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	6.41912625611905	5.74047805119086	6.51327198795559	6.29174163692167	5.84704184001427	5.82494171601659	6.32149194814529	6.0436952754281	-0.381443187859516	0.173094369885923	0.467022388426611
Merged-chr7-80865044-4	chr7	80864983	80865183	+	767.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009553, intron 2 of 2)	intron (NM_009553, intron 2 of 2)	2975.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	3.84555956863216	3.77374486813706	3.69734717052938	3.85681967486154	3.75228436648102	3.64467673917955	3.39298960138405	3.7962094336977	-0.420625897208696	0.37764244325103	0.680356664764105
Merged-chr8-22713200-3	chr8	22713121	22713321	+	660.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6638.0	NM_001159774	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	3.5429709733584	3.39938789436754	3.22240039772653	3.30826776151103	3.146375360765	3.06271554648924	3.43080224010429	3.28011899581879	-0.494199716266179	0.369210884204965	0.673491314105063
Merged-chr9-31446125-3	chr9	31446029	31446229	+	975.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144936, intron 1 of 5)	intron (NM_144936, intron 1 of 5)	18109.0	NM_144936	235135.0	Mm.390134	NM_144936	ENSMUSG00000041737	Tmem45b	BC018222	transmembrane protein 45b	protein-coding	4.24225311890137	4.42710955622594	4.6788331535638	5.38652878437145	3.58434506696638	3.86392848943299	3.91005895287599	3.92382519908848	-2.44430790900723	1.54902814068135e-06	5.21315716432896e-05
Merged-chr4-63590634-4	chr4	63590520	63590720	+	915.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	10144.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	4.020478326312	4.31148654346595	3.87055070100379	3.81493456265325	4.14601496499243	4.32436226597008	3.68702208937317	3.63710890165489	-0.0852298327375593	0.862329757962213	0.948096537565529
Merged-chr6-94962027-2	chr6	94961927	94962127	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18193.0	NR_040761	78773.0	Mm.67065	NR_040761	ENSMUSG00000108187	4930511E03Rik	-	RIKEN cDNA 4930511E03 gene	ncRNA	2.94777903828878	3.001182887232	3.09550673743553	3.14682393889785	3.37717520870136	3.28038783664467	4.09221930994488	3.5625120974822	1.94020719651887	0.00128200185108663	0.0164329149062233
Merged-chr1-34472746-4	chr1	34472630	34472830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 12 of 14)	intron (NM_011206, intron 12 of 14)	12984.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	6.65857705115631	6.50782841074804	6.37174817472953	6.76528637238096	6.62415613988998	6.64050512892767	6.87138809361476	6.72848848369157	0.171817318926476	0.425486560507939	0.716992238586874
Merged-chr16-58017553-3	chr16	58017445	58017645	+	915.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-262808.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	4.64333947028464	4.58549769601885	4.67652963727678	5.13690783663324	3.21764332197992	3.41831105449726	3.44073774160886	3.3714473836382	-5.66142926888638	4.54281575963497e-10	3.10319657346504e-08
Merged-chr3-96567298-4	chr3	96567198	96567398	+	946.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040409)	promoter-TSS (NR_040409)	-497.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	4.38042377267762	4.38104404492825	4.19506196121086	4.41066643209267	4.45103509756789	4.21667424895234	4.52219227774328	4.6841454554881	0.299803027688076	0.429195063039383	0.720137555798411
Merged-chr15-58746754-2	chr15	58746654	58746854	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76673.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	4.27576213844082	3.75842955681805	4.14778705900156	4.16119575252795	4.15309014737377	3.90639962097529	4.17335183030776	4.23230605258119	0.0624678997213106	0.884458187329512	0.956600709849833
Merged-chr2-167659312-4	chr2	167659228	167659428	+	934.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 1 of 5)	intron (NM_145538, intron 1 of 5)	2216.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	4.16761068407542	3.79162229917074	3.89580120095079	3.93770103611895	4.00877142411152	3.79454949201105	3.72023571714897	4.16557785459226	-0.039286194306119	0.930484236770519	0.974959334173714
Merged-chr13-23423908-4	chr13	23423820	23424020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013924)	promoter-TSS (NM_013924)	-54.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	6.82509651750327	6.83761686662173	6.78292423678584	6.7043848301054	7.06260142489605	7.39013775728072	6.92569033399267	7.06585980893172	0.465983843046498	0.0202155140385021	0.128996516485362
Merged-chr12-84243307-4	chr12	84243191	84243391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24410.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	6.10707177349942	5.85517297927946	5.608973470687	6.27848915197791	6.08119104314855	5.75880136544532	5.88757093551401	6.0840090406319	-0.0617418802262514	0.822186630211314	0.932093494597699
Merged-chr1-155059674-4	chr1	155059564	155059764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23600.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	7.04197556227694	6.96851369514632	6.74039772479562	7.18416640844105	7.20601703409285	6.83860704516665	7.31879813478908	7.18784137649638	0.204303875226742	0.331566598831976	0.642627926701357
Merged-chr3-132115941-4	chr3	132115858	132116058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	C-rich|Low_complexity|Low_complexity	30666.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	5.67118469201826	5.38070041710833	6.15460562563454	6.17680260295273	6.11525270943331	5.85105916487826	6.08440194297287	6.37635495243565	0.346146298108302	0.24644541201145	0.557685253667598
Merged-chr1-181846006-4	chr1	181845920	181846120	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3619.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	5.00965296338639	5.25624916252391	5.22305277884373	5.57855278272385	5.36227576626798	5.26335824545362	5.8026263023538	5.31381030062055	0.265459735611793	0.408562997078799	0.70438176546703
Merged-chr11-21079931-4	chr11	21079830	21080030	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11394.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	5.42823363499017	5.33811592886436	5.22831963218875	5.25061094363067	5.0498220285746	5.30624237192196	4.96587996757871	5.25541535650909	-0.303582752673102	0.307398045844426	0.619662574487691
Merged-chr9-45298256-4	chr9	45298175	45298375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20825.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	5.18944632413937	5.47761900473584	5.01076692097145	5.25549996651821	5.37636706548136	5.33330781568725	5.40657682172827	5.76737942463447	0.410795974696805	0.171009243369767	0.464147452195107
Merged-chr16-37869789-4	chr16	37869653	37869853	+	995.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177093, intron 1 of 3)	intron (NM_177093, intron 1 of 3)	1353.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	5.02240608188162	4.88508148621137	4.92077476789007	4.93733805329593	5.1972992412933	4.9056366246054	4.86152432130154	4.84437299264165	0.0649558236516165	0.839854287828743	0.939131078101489
Merged-chr11-110697213-4	chr11	110697114	110697314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	217874.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	6.42303679519378	6.73693098266406	6.37047010947712	6.63753630240053	6.33484360680146	6.39253838897047	6.49181312691951	6.40194738120869	-0.231008025285735	0.291276553312357	0.60358490792923
Merged-chr8-84907743-4	chr8	84907681	84907881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010062)	promoter-TSS (NM_010062)	-843.0	NM_010062	13423.0	Mm.350831	NM_010062	ENSMUSG00000003812	Dnase2a	Dnase2	deoxyribonuclease II alpha	protein-coding	6.11599192312179	6.09653034300427	6.40028095208873	6.47759579068264	6.53388255883122	6.31448314588373	6.24385914522606	5.85579768647241	-0.0352994468725037	0.891709579547251	0.959472066794561
Merged-chr12-75415175-4	chr12	75415075	75415275	+	943.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175644, intron 2 of 2)	intron (NM_175644, intron 2 of 2)	1606.0	NM_175644	217674.0	Mm.252250	NM_175644	ENSMUSG00000048982	Gphb5	OGH|Zlut1	glycoprotein hormone beta 5	protein-coding	4.61041574737701	4.65606092549025	4.87430904623409	4.67006435445756	4.46491488677234	4.74461006512825	4.9161636153879	4.90445297223316	0.12141895180149	0.729622475090741	0.89273193260024
Merged-chr14-121427894-4	chr14	121427801	121428001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-48671.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	5.73850971655409	5.469156787673	5.78644140583565	5.36287900691146	5.87919735129919	5.24577169871483	5.88711249224124	5.71132155216961	0.21447163889502	0.469329652016957	0.748251025868274
Merged-chr17-35822404-2	chr17	35822304	35822504	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008027)	promoter-TSS (NM_008027)	691.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	3.95332530419112	4.17047766524338	3.84263942729085	3.68337659563642	4.22348682417399	4.60550143385914	4.22090732524017	4.14921637249484	1.015940738738	0.0186679215200379	0.122263892701028
Merged-chr5-103376576-4	chr5	103376472	103376672	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29974.0	NR_152117	75519.0	Mm.416851	NR_152117	ENSMUSG00000105426	1700021F02Rik	Gm42618	RIKEN cDNA 1700021F02 gene	ncRNA	4.89016014952336	5.12060611281776	4.92709732579924	4.94836688175243	5.14832652987377	4.54137683548972	5.03736558837427	5.05868454752792	0.00574657306396708	0.986334204096381	0.994972893147437
Merged-chr7-25436377-4	chr7	25436276	25436476	+	986.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015569, intron 4 of 6)	intron (NR_015569, intron 4 of 6)	-23490.0	NM_153576	232983.0	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	5.01160924391714	5.91673917134114	4.94033101395746	5.22457140302762	4.97498462187634	4.96326796146816	4.87917397500803	4.55278610076583	-0.919026223908078	0.0167880727960874	0.113588387520711
Merged-chr14-123990023-3	chr14	123989894	123990094	+	933.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045479, intron 1 of 3)	intron (NR_045479, intron 1 of 3)	2359.0	NR_045479	69393.0	Mm.491348	NR_045479	ENSMUSG00000099994	1700024B18Rik	-	RIKEN cDNA 1700024B18 gene	ncRNA	3.27693547990729	3.05708279581596	3.27738044316133	3.73535848880825	3.01704760540183	3.39068498946861	2.95448451039545	3.03064053555049	-1.00736272868799	0.106677299705579	0.36013960898043
Merged-chr6-86490118-4	chr6	86490013	86490213	+	934.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1886.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	4.97047706958262	5.05706602150418	4.46412127933428	4.63310028477054	4.93226839864435	4.89714171135374	4.70108014905795	4.63942748695342	0.0107235160873924	0.976259394984027	0.991528225629167
Merged-chr7-135655343-4	chr7	135655236	135655436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316681, intron 3 of 17)	intron (NM_001316681, intron 3 of 17)	-3022.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	7.35867257078571	7.40640439289853	7.63828422367187	7.86012875913224	7.44067900443038	7.33540369836854	7.5413971289259	7.59077271555958	-0.149949356838073	0.447348194930536	0.732896455509002
Merged-chr6-127151010-4	chr6	127150883	127151083	+	836.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009829)	promoter-TSS (NM_009829)	65.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	4.15647810667004	3.93939855490911	3.67773355567461	3.53423156369252	4.28179066409977	3.73755762510376	3.7197979635851	3.786764280925	0.203995979761387	0.68663786205512	0.871850518805905
Merged-chr7-44051415-3	chr7	44051305	44051505	+	877.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020268)	promoter-TSS (NM_020268)	-885.0	NM_020268	16619.0	Mm.445911	NM_020268	ENSMUSG00000063177	Klk1b27	Gk27|Klk21l|Klk27|mGK-27	kallikrein 1-related peptidase b27	protein-coding	4.19790545216915	4.3195624815802	4.08310732733249	4.05128130345701	2.9642615992054	3.15284031897504	3.18666404377608	3.34188298611859	-4.20539450198776	2.17896243030941e-08	1.08307518733934e-06
Merged-chr1-60852557-4	chr1	60852453	60852653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56472.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	6.14915852836716	6.1772274433413	6.0004014675888	6.36363584029039	6.00754075006568	6.26420386290098	6.46688937607605	5.97322042603622	-0.00666279741373717	0.978740759448596	0.992516114931184
Merged-chr12-51692079-4	chr12	51691977	51692177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_052973)	promoter-TSS (NM_052973)	-163.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	8.19085439185609	8.50689562514906	8.84543599269048	8.57544480265241	8.46588009595038	8.59470282592926	8.72057570613361	8.36306901969967	-0.0115895703365656	0.950407702779565	0.982264362614525
Merged-chr19-5433159-4	chr19	5433040	5433240	+	893.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7996.0	NM_001256515	107242.0	Mm.329658	NM_134149	ENSMUSG00000047423	AI837181	Bles03|N28173	expressed sequence AI837181	protein-coding	4.36988028600071	4.42747747466514	3.92079255604434	4.12927670917689	4.22853389852798	4.31648147216931	4.57934286969808	4.56294490721237	0.483711296588287	0.233466819625574	0.543123010560797
Merged-chr15-34469897-4	chr15	34469786	34469986	+	851.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173421, intron 1 of 2)	intron (NM_173421, intron 1 of 2)	16574.0	NM_173421	239368.0	Mm.211977	NM_173421	ENSMUSG00000044726	Erich5	-	glutamate rich 5	protein-coding	3.73196888423568	3.69142841805086	3.61627634383941	3.58449062273346	4.02682238795205	4.06118804726895	4.2125831374239	3.88729585937695	1.14011421925518	0.00899069533409943	0.073120281442626
Merged-chr17-10740346-4	chr17	10740233	10740433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	99858.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	5.41080619634578	5.63380335196015	5.68767786457001	5.91525636163284	5.74149487452302	5.49434399535118	5.86287002288731	5.27864739422659	-0.11670149575738	0.69191270545146	0.87467626526963
Merged-chr8-26076332-4	chr8	26076246	26076446	+	967.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207659, intron 6 of 21)	intron (NM_207659, intron 6 of 21)	-6263.0	NR_110583	76604.0	Mm.437190	NR_110583	ENSMUSG00000085437	1700047A11Rik	4930554C15Rik	RIKEN cDNA 1700047A11 gene	ncRNA	4.80345289229652	5.2253994238102	5.03730492595158	5.07629699658958	5.39387232627864	4.98471222137217	5.55030062899226	5.34729550995536	0.534787128507842	0.0890066282666783	0.32553884312543
Merged-chr17-21449881-4	chr17	21449780	21449980	+	967.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308323)	promoter-TSS (NM_001308323)	-494.0	NM_001308323	22709.0	Mm.293030	NM_009558	ENSMUSG00000023892	Zfp51	Zfp-51|zfec12	zinc finger protein 51	protein-coding	5.0462741207039	5.11186554537538	5.18168260384741	5.08684359910244	5.26936631048278	5.44641665992032	5.38698868575495	5.0437198024882	0.347277663839968	0.240724274013195	0.551321249074462
Merged-chr7-48788525-4	chr7	48788426	48788626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028031)	promoter-TSS (NM_028031)	-477.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	6.95840559398538	6.8228344388148	6.60120854365726	7.14798507570852	6.9123093891951	6.74400148684885	6.76532186073283	6.9294786867284	-0.0978835316441339	0.650021234328749	0.853021044216188
Merged-chr16-48831497-3	chr16	48831391	48831591	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11061.0	NM_020509	57262.0	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	4.0730706238019	4.04361773965339	4.71568130598633	5.07911058255907	3.73109974860971	3.70478799774664	3.94938315586628	4.43161127538504	-1.39411343854749	0.0090469803753872	0.0733935509618971
Merged-chr10-98776469-4	chr10	98776369	98776569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138173.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	7.39325428048082	7.06376260514746	6.84455867395764	6.9645902651472	7.27698959896344	7.23226526267584	7.00794385339481	7.05067093988505	0.100690379214765	0.62896003937703	0.841850103289223
Merged-chr17-47793520-4	chr17	47793441	47793641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7797.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	7.3290278652346	7.39281814999993	7.34065881012343	7.32821232029664	7.42243346778947	7.59760102830734	7.47690442334778	7.37618303093288	0.161492154319944	0.34804758507363	0.655908897483609
Merged-chr9-119403650-2	chr9	119403550	119403750	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007397, intron 1 of 9)	intron (NM_007397, intron 1 of 9)	1472.0	NM_001313757	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	3.71429619743461	3.38576506103849	3.56937995615299	3.2287712728913	3.4200085854988	3.39665223422046	3.44868725209353	3.56728932711141	-0.052279476785719	0.92026466277946	0.97042249528858
Merged-chr13-119690237-4	chr13	119690131	119690331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145942)	promoter-TSS (NM_145942)	-120.0	NM_145942	208715.0	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding	9.51860167500306	9.63054006064605	9.62900126747583	9.87948653602242	9.57949937129346	9.64095370030152	9.79294143573491	9.33792165515479	-0.0937628157908422	0.562777435880429	0.805832530849589
Merged-chr15-5236724-4	chr15	5236625	5236825	+	771.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136079, intron 2 of 2)	intron (NM_001136079, intron 2 of 2)	7462.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	4.14587837513086	4.05637371052171	3.65950707628768	4.13142538793746	4.21715462132614	4.31669417426179	4.21451667582637	4.05039285273667	0.463456548309432	0.280733827297783	0.592861276121877
Merged-chr17-50388940-4	chr17	50388851	50389051	+	949.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95331.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	4.68078213360007	4.47920040943941	4.63083279348623	5.04076682056783	6.04801111498274	5.99428311117656	5.9463866087147	5.87749359639272	2.12476589558646	3.11159218445252e-10	2.2125876133581e-08
Merged-chr5-92106465-4	chr5	92106360	92106560	+	923.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-22716.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	4.92521602455833	4.57513326776327	4.5782880260788	5.02431243990784	4.91874305316115	4.66599259871202	4.86821974997256	5.05098444844762	0.159055833339862	0.652067486956852	0.854351722087063
Merged-chr15-73492423-3	chr15	73492316	73492516	+	968.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20144.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	3.99004704729367	4.32455583656641	3.88962654004674	4.28638085378784	3.87377640978755	4.06313104000522	3.76591112992608	3.83393500739136	-0.709271543072902	0.111937119831723	0.369743500552577
Merged-chr16-49853839-1	chr16	49853739	49853939	+	694.0	f0_balb.idr	Intergenic	Intergenic	-1815.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	3.16460125063522	3.24336760675973	3.37832213466245	3.25493482470185	3.16777892221626	3.21573129792343	2.9012999353115	2.83606256354223	-0.867150241427045	0.147373168027644	0.428385458693986
Merged-chr13-37671323-4	chr13	37671226	37671426	+	840.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-154712.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.24676963863038	4.61820218509853	4.24741914841416	4.14839403212255	4.2202272577348	4.37459494589973	4.27249642759214	3.94176780348522	-0.27569568314225	0.507290804411557	0.772710503440438
Merged-chr4-118409296-4	chr4	118409191	118409391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020000)	promoter-TSS (NM_020000)	-28.0	NM_198170	230676.0	Mm.415218	NM_198170	ENSMUSG00000033253	Szt2	6430407N22|TIGR	seizure threshold 2	protein-coding	7.60448699574751	7.79348612441965	7.16097382966387	7.64290598108744	7.72701629574903	7.70223148898013	7.70015482624563	7.70087166836998	0.171568280413546	0.370776128361252	0.67499102382735
Merged-chr6-88465375-4	chr6	88465272	88465472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019685)	promoter-TSS (NM_019685)	-37.0	NM_019685	56505.0	Mm.42195	NM_019685	ENSMUSG00000030079	Ruvbl1	2510009G06Rik|Pontin52|Tip49a	RuvB-like protein 1	protein-coding	7.65973753328899	7.7784359634971	7.3082393615918	7.53834068810847	7.81958955796473	7.57105729309779	7.94965391284434	7.26969744213147	0.130229869240861	0.54052385869055	0.792803225653417
Merged-chr3-146657644-4	chr3	146657533	146657733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6316.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	8.47547719548953	8.13980747636088	8.60165080109042	8.62475801916	7.92980154255192	8.32227302910697	8.34697452729434	8.08730114541407	-0.37861747962088	0.0438826998493157	0.213428540661048
Merged-chr6-124477578-4	chr6	124477495	124477695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12811.0	NM_153508	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	5.82963551704515	6.21964563770218	5.9703604859914	5.72864052392868	6.05092959472623	6.16710085165009	6.0039545430163	5.85088026609902	0.129423331249313	0.613826698619645	0.833569981513836
Merged-chr9-90034123-4	chr9	90034017	90034217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20150.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	7.60752583885053	7.90424242418681	7.48709357143218	7.70676870554716	8.01965494450006	7.99908091318904	7.73010744690699	7.81641205277766	0.273351020902344	0.131289799753866	0.403413626448538
Merged-chr10-95279662-4	chr10	95279558	95279758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	44051.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	6.6121424916815	7.13494738611917	6.91480642076531	6.92909322519872	6.55725821510307	6.72352166643668	6.59583948280405	6.89710146294067	-0.313251422623373	0.150077122774722	0.432544693302574
Merged-chr12-79812673-2	chr12	79812573	79812773	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 10 of 10)	intron (NM_009014, intron 10 of 10)	112060.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	3.68696107058675	3.8888617113028	3.96064491762528	3.74287792285031	3.81657370525351	4.3131000679449	3.99149838484131	4.26349426999932	0.772263123175974	0.0831422999805603	0.313342462701748
Merged-chr3-40746461-4	chr3	40746358	40746558	+	959.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011020, intron 1 of 18)	intron (NM_011020, intron 1 of 18)	845.0	NM_011020	18415.0	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	4.46191196724685	4.51479465696841	4.42015419581743	4.70397515408623	4.38045748818405	4.14414054802235	4.597659420707	4.54055149710107	-0.26234607637163	0.491163238762131	0.762813557894214
Merged-chr2-58797086-4	chr2	58796987	58797187	+	835.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41903.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	4.04025515252963	4.03651833945012	3.89233766021505	3.99546168676755	4.1622054802474	3.65072866690271	4.06878505488424	4.21252455572915	0.147028547918346	0.738224978407317	0.896701754212797
Merged-chr6-15727773-4	chr6	15727660	15727860	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	7099.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	5.30688567952938	5.24711461941957	5.2456151326332	5.20716339431847	5.65470894701384	5.596390232789	5.05118467820528	5.33406895670533	0.340801231277856	0.256613072603059	0.568220933109757
Merged-chr4-62519984-4	chr4	62519872	62520072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008525)	promoter-TSS (NM_008525)	-63.0	NM_001276446	17025.0	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	8.63500224954362	8.51776270827222	8.64054313743003	8.87653453163534	7.3642157220613	7.73844886181686	7.67927183515228	7.60270706593232	-1.38975374549273	2.73499442751754e-15	4.64616153594918e-13
Merged-chr4-99033201-4	chr4	99033097	99033297	+	888.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013913, intron 2 of 6)	intron (NM_013913, intron 2 of 6)	2243.0	NM_013913	30924.0	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	4.11866286886998	4.25058597698474	4.7218079459008	4.6649450534386	4.02495311214893	4.34380839445035	4.49505496335053	4.26218758538545	-0.451901621515106	0.287411608885404	0.599176138852889
Merged-chr4-137048762-4	chr4	137048635	137048835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198248)	promoter-TSS (NM_198248)	-40.0	NM_198248	230848.0	Mm.31068	NM_198248	ENSMUSG00000060862	Zbtb40	BC059177|C230087D24|Gm571|mKIAA0478	zinc finger and BTB domain containing 40	protein-coding	4.99487231874468	5.56218093670135	5.20919113822307	4.99350961411432	5.55282741228166	5.72392868176057	5.18356810791816	5.35977244775339	0.475338131503693	0.137449328407367	0.4123711589761
Merged-chr1-127850257-1	chr1	127850157	127850357	+	587.0	f0_balb.idr	Intergenic	Intergenic	-9967.0	NM_011737	22625.0	Mm.246566	NM_011737	ENSMUSG00000051590	Map3k19	Ysk4	mitogen-activated protein kinase kinase kinase 19	protein-coding	3.76861402762074	3.67675843274311	3.82051851790587	3.91789660307049	3.84316418853655	3.98962315491281	3.7541310624648	3.81832636345559	0.129971672092823	0.771127755224535	0.91036734532567
Merged-chr11-94370962-4	chr11	94370879	94371079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 8 of 30)	intron (NM_029600, intron 8 of 30)	21997.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	7.5501599330165	7.61288095878577	7.51727772905405	7.38327002576483	6.86300378099937	7.15029023640993	6.93701122066535	6.73297332575293	-0.801313900600757	3.15170184719475e-05	0.000757376724447923
Merged-chr11-119709414-4	chr11	119709319	119709519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 3 of 33)	intron (NM_028898, intron 3 of 33)	106514.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	6.57798934373239	6.29637821173477	6.60921839336187	6.46511241299064	6.17753579903105	6.23740008662445	6.46742267309791	6.37725622180657	-0.25701591015683	0.249748487945678	0.56079709388545
Merged-chr3-27982728-4	chr3	27982596	27982796	+	964.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164056, intron 2 of 26)	intron (NM_001164056, intron 2 of 26)	-1475.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	4.4595273560745	4.52137726892218	4.5433891023639	4.65751467751215	4.63589192129536	4.63267673467832	4.3972556871793	4.45743398089526	-0.0402946408117828	0.910593878764608	0.96671350549607
Merged-chr9-95572778-4	chr9	95572669	95572869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12952.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	8.14637000393033	8.10921089759776	8.57150043519133	8.39515216540859	8.11516937152609	7.93354242037279	8.22760914767	8.23819351905617	-0.236725115071199	0.188251908918016	0.486844904377598
Merged-chr17-34647617-4	chr17	34647520	34647720	+	973.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017406, intron 1 of 17)	CpG	474.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	4.52575035024821	4.78955136643117	4.56895821462952	4.45852447460846	4.71472909676377	4.82259506805592	4.46253955728316	4.89524286652487	0.316025636608172	0.374402929077185	0.677784078373359
Merged-chr6-42350895-6	chr6	42350784	42350984	+	990.8148189999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289618, intron 2 of 9)	intron (NM_001289618, intron 2 of 9)	1056.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	4.26089781477673	4.04680938223034	4.2615489004686	4.13689619204638	4.32140975545316	4.38884609775565	4.36981808510066	4.46606060579547	0.514721438421412	0.175827106105856	0.470658653309832
Merged-chr8-40995071-4	chr8	40994983	40995183	+	915.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 12 of 13)	G-rich|Low_complexity|Low_complexity	-22385.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	4.61487559806122	4.34456583474249	4.49939593762991	4.58664991982758	4.25909302697575	4.45450453969743	4.26021552438224	4.68438227235851	-0.225640003387601	0.552795980977293	0.799873237323185
Merged-chr10-13983045-4	chr10	13982946	13983146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	16667.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	8.18896794372305	8.45093911867729	8.5089840651101	8.73002093224381	8.71288355886568	8.55138033620708	8.92281550680567	8.59385583140784	0.267161417962687	0.138628704364749	0.414213849819512
Merged-chr9-107626883-3	chr9	107626751	107626951	+	876.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	8491.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	3.130223930348	3.35239041377621	3.32208930654764	2.88059355984636	3.43229097353363	3.55348274741635	3.5739052728972	3.58782160233642	1.30595037884944	0.0169780583357743	0.114472029391122
Merged-chr7-47008447-4	chr7	47008333	47008533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175318)	promoter-TSS (NM_175318)	-19.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	8.39842315399248	8.54831180065535	7.95550424154557	8.00839537300271	8.68803385990244	8.95668616007075	8.36065245713807	8.50985114157553	0.502000122182281	0.0158957792705552	0.1091707519007
Merged-chr2-157063586-4	chr2	157063478	157063678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	15687.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	6.89105179156485	6.40565336485856	6.75131313024361	6.84189712343321	6.33784014415759	6.17248009857546	6.20682818554986	6.27442483384031	-0.710809809405555	0.00176267439364505	0.0212042252265103
Merged-chr13-85506928-4	chr13	85506881	85507081	+	975.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-217495.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	4.90552803087292	4.19137233492021	4.58583129530728	4.89958963538638	4.53854439070826	4.58924655964899	4.52387857378076	4.66136322137327	-0.235923575999323	0.543712587534649	0.794843258741606
Merged-chr9-66277133-7	chr9	66277025	66277225	+	961.157166	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73325.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	4.12096342414983	4.11381703752539	4.58773837414983	4.09277256919268	4.10148718857139	3.9258752028593	3.90306191995487	4.20963991298121	-0.497081588746093	0.253398312918196	0.564721751011949
Merged-chr8-85083665-4	chr8	85083570	85083770	+	985.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010764, intron 1 of 23)	intron (NM_010764, intron 1 of 23)	401.0	NM_010764	17159.0	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	4.77946155550187	5.24860418488485	4.94029334556428	5.02528135753315	5.2948572921058	5.28983272679887	5.02418541564436	5.42989299844358	0.473487195258801	0.131532146229439	0.403857870485267
Merged-chr4-8837666-4	chr4	8837560	8837760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 14 of 36)	intron (NM_001355382, intron 14 of 36)	86336.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	6.990953758696	7.12118666107779	7.43635415634518	7.30025674620946	7.41440913136793	7.25953608982477	7.46307978478588	7.31371011129481	0.189797540369171	0.320913989539162	0.632680500237368
Merged-chr13-112466231-3	chr13	112466133	112466333	+	838.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010560, intron 1 of 16)	intron (NM_010560, intron 1 of 16)	2163.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	4.49452265973275	4.15543908286695	4.49527450495464	4.19317009826831	3.92802372071281	4.33866976352078	4.09959618858009	3.90364258559745	-0.667682214601157	0.11686854433621	0.378237899209161
Merged-chr1-66861294-3	chr1	66861195	66861395	+	853.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007381, intron 1 of 10)	ORR1D2|LTR|ERVL-MaLR	2014.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	3.70244629300514	3.71757482755745	3.81283659933919	4.16580082384742	3.77707229964702	3.82177966874602	3.89760900152632	4.21317520698306	0.150618907267665	0.752869995698549	0.90269575379141
Merged-chr19-21571371-4	chr19	21571230	21571430	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81461.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	4.79264514052955	4.51330590886211	4.88967740854508	4.78294273350428	4.0053519318893	4.39285168622259	4.55403739860636	4.26074709379621	-1.01441086966814	0.00953731965727792	0.0762846247764226
Merged-chr16-95605519-3	chr16	95605430	95605630	+	819.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18937.0	NM_001302152	13876.0	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	ETS transcription factor	protein-coding	3.4133199310049	3.60624808222818	3.22884019898421	3.52238343363518	3.56656316835254	3.46785778856947	3.65705689593528	3.35329944598704	0.20335498128883	0.691946216637905	0.87467626526963
Merged-chr19-32387899-4	chr19	32387755	32387955	+	922.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001362423, exon 1 of 10)	5' UTR (NM_001362423, exon 1 of 10)	194.0	NM_001362423	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	4.39711758780214	4.38943289557119	4.72833773256998	4.42285784964733	4.36567474129458	4.29490616979659	4.29181572029918	4.00656645760712	-0.558260719191781	0.158073545547086	0.444935024458085
Merged-chr14-19733517-4	chr14	19733377	19733577	+	961.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17780.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	4.84579308320005	4.87673628496846	4.98540963071935	5.03796293937883	4.78514870775111	4.82534193005078	4.62777506599834	5.01442417931507	-0.258575362227655	0.431230690958299	0.721549793529779
Merged-chr18-36296667-4	chr18	36296568	36296768	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3433.0	NM_001267796	109169.0	Mm.426423	NM_001267796	ENSMUSG00000110185	Igip	6330403M23Rik	IgA inducing protein	protein-coding	5.21329554547189	5.08390110774192	4.86748625278499	5.24165978664148	5.1705684879973	5.12067952016561	5.27565301497439	5.11618289164239	0.0959773535527113	0.752771196590956	0.902657672182807
Merged-chr3-8969725-4	chr3	8969620	8969820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-5574.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	7.08199884430416	7.04435218515784	7.48064318156378	7.79418170130431	7.26718808682215	7.28612357437392	7.58239870579463	7.53825829129931	0.0305351231396403	0.895879739128754	0.960979922829742
Merged-chr2-160021775-4	chr2	160021697	160021897	+	945.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040499, intron 1 of 3)	intron (NR_040499, intron 1 of 3)	5144.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	5.34300548133421	4.68980092370365	5.79487995533095	5.636155751403	5.09510862489723	5.12408722243667	4.75638089513228	5.31126835556699	-0.631233945372896	0.0941925002146777	0.335729993629471
Merged-chr19-6077211-4	chr19	6077133	6077333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081041)	promoter-TSS (NM_001081041)	-46.0	NM_001081041	68505.0	Mm.227361	NM_001081041	ENSMUSG00000024799	Vps51	1110014N23Rik|3110057M17Rik|AI837850|Ffr	VPS51 GARP complex subunit	protein-coding	5.59773700744727	5.97726327312728	5.31811403596629	5.65211680783211	6.10249851749254	6.0035045579307	5.84483608284457	5.84791305429767	0.479583082380486	0.0789259078790863	0.304016452145991
Merged-chr19-28685604-3	chr19	28685479	28685679	+	878.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045330, intron 1 of 4)	intron (NR_045330, intron 1 of 4)	-5502.0	NM_175459	226075.0	Mm.223508	NM_175459	ENSMUSG00000052942	Glis3	4833409N03Rik|E330013K21Rik	GLIS family zinc finger 3	protein-coding	3.48502051813738	3.73192520980696	3.84882199586196	4.01694064486891	3.68658371849926	3.25818041095741	3.63935859588418	3.59822359441082	-0.722344472276753	0.168093868309206	0.460076653556141
Merged-chr4-136511812-4	chr4	136511704	136511904	+	824.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024452, intron 1 of 4)	intron (NM_024452, intron 1 of 4)	42043.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	4.00701334499214	3.80620797504114	4.05761753169348	3.79584953640245	4.24439279288231	4.36790495437814	4.34121382941607	4.23763210389493	1.00784410810252	0.0125630975988796	0.0927815650540204
Merged-chr10-40500058-4	chr10	40499961	40500161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70301.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	6.49352870726975	6.08958138742837	6.85224626678114	6.99809573976266	5.9308580425574	6.02334987690773	6.17782495851244	5.72738002622586	-1.03820689041233	0.000239966631502604	0.00422264149906646
Merged-chr10-4047265-3	chr10	4047166	4047366	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 17 of 27)	intron (NM_001170785, intron 17 of 27)	74191.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	4.67300242438519	4.62601579291381	4.97509806852662	5.4245545066132	4.04520321908368	4.24769664982295	4.1004553729885	4.375082702222	-1.79543964005535	2.15359249670339e-05	0.000543776375746189
Merged-chr2-110017781-4	chr2	110017688	110017888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026613)	promoter-TSS (NM_026613)	-29.0	NM_001355581	68201.0	Mm.181767	NM_026613	ENSMUSG00000027160	Ccdc34	2810027O19Rik|4930522P10Rik|AI596202	coiled-coil domain containing 34	protein-coding	7.98208823999095	7.82564728632758	8.08598457456793	8.32112757261307	7.64612706583361	7.30393671898643	7.88359066705925	7.65166946596329	-0.562921939001602	0.00498032604033695	0.0474050049779545
Merged-chr7-27689387-4	chr7	27689264	27689464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001112731)	promoter-TSS (NM_001112731)	24.0	NM_001112731	112415.0	Mm.145362	NM_198417	ENSMUSG00000057093	Zfp607b	C030039L03Rik	zinc finger protein 607B	protein-coding	8.66116044460275	8.78024790741056	8.77239489247977	8.88873461354326	8.37807051199358	8.63415608982739	8.68324919338523	8.56062708177977	-0.272007090257144	0.0785661809742684	0.303284462040645
Merged-chr17-5941044-4	chr17	5940901	5941101	+	925.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113353)	promoter-TSS (NM_001113353)	-279.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	4.08834088087625	3.83805703988636	3.95003463151163	3.68447086117973	3.96559150205119	3.85805429554018	3.98066932552035	4.17106908502786	0.318167225312423	0.47047065717904	0.749204562516411
Merged-chr4-129019044-4	chr4	129018945	129019145	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25821.0	NM_001033966	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	5.10080917470907	5.71399477200082	5.23332555190596	4.78529210454043	5.31541654226328	5.27814904540701	5.38100748610269	5.09819639388738	0.0518451906438424	0.881508314150706	0.955384724180766
Merged-chr11-3164650-3	chr11	3164628	3164828	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 8 of 32)	intron (NM_030207, intron 8 of 32)	28735.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.21611147282797	4.95069806560098	5.19349889025619	5.04543354766006	3.18565393615799	3.53958905075795	3.47655748899762	3.48694832119399	-7.82768668114151	1.84120101267172e-13	2.27525775835e-11
Merged-chr7-81290726-4	chr7	81290609	81290809	+	953.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 3 of 21)	MER105|DNA|DNA	54525.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	4.78746574862028	4.60472318535389	4.48209393554216	5.05353434569819	4.3418989791127	4.32091698197212	4.46190382779807	4.56287953866571	-0.766977182612393	0.0446441178142837	0.215741438327166
Merged-chr17-42924965-4	chr17	42924866	42925066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48542.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	7.30343242642871	6.91396291169552	7.70911621820734	7.45121262651701	7.37501034793882	7.05851650466409	7.70166100181469	7.61645108435	0.115122717236657	0.627271146314128	0.841123788167238
Merged-chr4-136878834-4	chr4	136878718	136878918	+	808.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	7359.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	4.19920067798604	4.34658081551938	4.19983972188237	4.01679430968673	4.44044490352944	4.01924555916282	4.13607736723844	4.10410094273219	0.0269715885891051	0.948383578520935	0.981405482896336
Merged-chr4-45108120-4	chr4	45107982	45108182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134646)	promoter-TSS (NM_001134646)	31.0	NM_001134646	68512.0	Mm.282081	NM_001099675	ENSMUSG00000078713	Tomm5	1110019J04Rik|Tom5	translocase of outer mitochondrial membrane 5	protein-coding	6.02468802748313	6.12919511837024	6.24674994053014	5.91136409639769	6.15514516108127	6.2859623643204	6.23293942087993	5.9993230973362	0.154324235857403	0.515116307779351	0.777385138962536
Merged-chr1-87181100-4	chr1	87180995	87181195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2219.0	NM_027084	69453.0	Mm.84618	NM_027084	ENSMUSG00000036480	Prss56	1700027L20Rik	protease, serine 56	protein-coding	5.70280018427619	5.74922364028433	5.46897795102632	5.76324052972421	5.44339115964645	5.46133813549073	5.32336186595409	5.5212188752229	-0.424147795118254	0.115841315466927	0.376574029949187
Merged-chr4-139286805-2	chr4	139286705	139286905	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 6 of 9)	intron (NM_001037761, intron 6 of 9)	23903.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	2.37040543027381	2.23459512122327	2.15533542669104	2.14471700454711	2.21808081375051	2.54158764322943	2.42594133661357	2.43406405029685	1.09146684049752	0.138788710325274	0.414381792154761
Merged-chr14-54777707-2	chr14	54777609	54777809	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	4177.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	2.96449144642694	2.86731686523349	3.08244735463146	2.6977503205372	3.12467294959276	2.94337911574465	3.01350747956245	3.0233868819266	0.568338880748096	0.343573409967804	0.65224333888351
Merged-chr6-119396418-4	chr6	119396332	119396532	+	992.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	intron (NM_197985, intron 1 of 7)	-7698.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	5.47041855506654	5.46172254622302	5.33124495984508	5.78138424389427	5.08626114187148	5.05470862655799	5.24449882454684	5.10132927562851	-0.758056605463544	0.0114581581203135	0.0869523463980016
Merged-chr11-83703908-4	chr11	83703795	83703995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081957)	promoter-TSS (NM_001081957)	-161.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	7.46402976929466	7.38555386906421	7.16480743656969	7.19838694484588	7.0298397109264	6.93152685966601	7.19477810946807	6.89622917333508	-0.388631181598098	0.045013539283795	0.216868736474973
Merged-chr5-107984796-4	chr5	107984679	107984879	+	948.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	ID_B1|SINE|B4	2298.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	4.89245931643114	5.29683629032936	4.92953462832677	5.36550543874259	4.54953786786347	4.95459959263647	4.832943065186	4.890002237132	-0.693064657280091	0.0443414584534681	0.214735383811362
Merged-chr9-69656229-4	chr9	69656148	69656348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104692.0	NM_022378	64290.0	Mm.440890	NM_022378	ENSMUSG00000059246	Foxb1	C43|Fkh5|Foxb1a|Foxb1b|Hfh-e5.1|Mf3|Twh	forkhead box B1	protein-coding	6.11905201063897	5.8276871872203	6.30958552455925	6.19599153980958	5.34701989360205	5.59604311073523	5.48151707964309	5.44363010188052	-1.09367650514126	4.01917931033817e-05	0.000936435889134404
Merged-chr17-17625302-4	chr17	17625169	17625369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172827)	promoter-TSS (NM_172827)	-780.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	7.77075533830682	7.69448105096649	8.33251717144658	7.99751544298865	7.83569809078206	7.94163056215119	8.08796448457042	7.81409721703486	-0.0643884051229016	0.744761508277066	0.899349861357637
Merged-chr10-81482752-4	chr10	81482589	81482789	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311124)	promoter-TSS (NM_001311124)	20.0	NM_176954	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	5.16712124734326	4.4618937056764	4.56605617670986	4.92658912678556	5.08702317254517	5.42567275698452	5.08113445854262	5.13404794398067	0.714718987519376	0.043097258115802	0.211224935304322
Merged-chr11-48901057-4	chr11	48900949	48901149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024230, intron 2 of 4)	intron (NM_001024230, intron 2 of 4)	1103.0	NM_001024230	432555.0	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	5.61778767823251	5.10140533510292	5.71287862969083	5.26457283953079	5.65792916384585	5.39660641323951	5.22684162442676	5.34327775778055	-0.0154815463495195	0.960526748792302	0.985916036285976
Merged-chr17-73928184-4	chr17	73928075	73928275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 6 of 35)	B1F1|SINE|Alu	22021.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	6.14761036137949	6.17303739195541	5.96437945116499	6.13804380079483	5.8729649271121	5.95127386109426	5.99803542669437	5.45254227766134	-0.434954227298848	0.0884668875437671	0.324553006617693
Merged-chr2-52941114-3	chr2	52941031	52941231	+	912.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	83263.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.75144488300688	3.80383819231472	3.59743528947116	3.77760984978988	3.70960341493235	3.53564182190627	3.63653564650174	3.42028356481252	-0.475110265728078	0.323684162375676	0.635168213844824
Merged-chr14-87141274-4	chr14	87141163	87141363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019670)	promoter-TSS (NM_019670)	-39.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	8.46616839113985	8.37481525340078	8.37262713972805	8.83930077120067	8.52135416169982	8.65546546496937	8.75994892322276	8.42600701875945	0.0738572627032181	0.682695546143815	0.86997749614016
Merged-chr5-120648913-5	chr5	120648929	120649129	+	850.1199949999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281999)	promoter-TSS (NM_001281999)	-159.0	NM_001281999	19415.0	Mm.41209	NM_013832	ENSMUSG00000029602	Rasal1	MRASAL	RAS protein activator like 1 (GAP1 like)	protein-coding	3.35629006837554	4.15623676455318	3.7840271314639	3.21953193516815	3.88679465540192	4.00909788581914	3.60290402127619	4.14375934795319	0.676893115248287	0.227477303236629	0.536124905835687
Merged-chr8-46817424-4	chr8	46817307	46817507	+	970.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 5 of 7)	intron (NR_152560, intron 5 of 7)	77662.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	5.07314383971495	5.20864627962339	5.16900665270158	5.1106522771389	4.8432945371837	5.07374151069332	4.62852672710013	5.25364980053958	-0.338554077314613	0.300875404475789	0.612761385269876
Merged-chr8-84908672-4	chr8	84908575	84908775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010062)	promoter-TSS (NM_010062)	51.0	NM_010062	13423.0	Mm.350831	NM_010062	ENSMUSG00000003812	Dnase2a	Dnase2	deoxyribonuclease II alpha	protein-coding	8.24333824907698	8.63010367335744	8.37314427444743	8.34335563572297	8.35029152652458	8.36808086740855	8.41114731074244	8.10993124066246	-0.114928691338301	0.495078228800531	0.76551980639526
Merged-chr17-87098037-2	chr17	87097927	87098127	+	797.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-9652.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	3.64504007684588	3.82094304137719	3.74367079300872	3.87253999655505	3.29388188121406	3.26880443937787	3.57905885605484	3.3599979981407	-1.34943450567015	0.00887063002130935	0.0724002493162227
Merged-chr13-37894398-1	chr13	37894298	37894498	+	970.0	f0_balb.idr	non-coding (NR_033615, exon 4 of 10)	non-coding (NR_033615, exon 4 of 10)	5527.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.013143063073	3.27624592807809	3.38977496633354	3.8445627992815	3.1830532968505	3.56730267309255	3.24992668291279	3.71366408249244	-0.719070026940007	0.219442093543895	0.526993886166704
Merged-chr7-109139583-3	chr7	109139458	109139658	+	958.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302205, intron 3 of 3)	intron (NM_001302205, intron 3 of 3)	30954.0	NM_001302206	109594.0	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	3.37653971279085	3.85076089008202	3.78911685962956	3.89149836324174	3.97713809806962	3.68570292961018	3.72263135548989	3.92990850428819	0.254231918161599	0.602202131648872	0.827493156923456
Merged-chr3-16086739-4	chr3	16086635	16086835	+	906.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80403.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	3.93273296228954	4.02297644548005	4.14313437338912	4.28265965521422	4.61095876347092	4.21886792596766	4.53206522859769	4.18821057597727	0.709459294829994	0.0878303669024579	0.323284604703178
Merged-chr2-102986574-4	chr2	102986479	102986679	+	908.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84914.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.92306395118543	4.78317956764471	4.38267984890351	4.37538928080481	4.76162246323362	4.69457353708041	4.54108623720618	4.6787229457384	0.103964502741874	0.780527811143264	0.914536684873272
Merged-chr8-123374888-3	chr8	123374779	123374979	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359076, intron 1 of 16)	intron (NM_001359076, intron 1 of 16)	1168.0	NM_001286363	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	3.66180116534282	3.62493947020309	3.76798347131941	3.60889810793107	4.00071212253954	3.60154712860268	3.84884851101049	3.86327108370454	0.542500826657566	0.235724065592415	0.545663379778285
Merged-chr3-54358959-4	chr3	54358888	54359088	+	954.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2119.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	5.07405437726448	4.60255799293536	4.57154712350366	4.7430558174464	4.87834478136414	5.05365307446855	4.75231238560202	4.80884943483381	0.241042310637969	0.483989856937336	0.75820745723529
Merged-chr16-92675878-4	chr16	92675772	92675972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	21457.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	6.81444191110077	6.85506459455855	6.60298719847066	6.99948016936945	6.76638718755419	7.14860864809615	6.88826559244985	6.85223747642842	0.108496121982864	0.607145504086036	0.829816429565466
Merged-chr2-51089917-4	chr2	51089818	51090018	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59193.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	4.50496964614463	3.91972371237715	4.12759783391668	4.49847955203462	3.81310833191273	4.25391611122672	4.15731251242235	4.46588596128723	-0.259179593222641	0.569045465693391	0.809191633255217
Merged-chr2-113645903-4	chr2	113645807	113646007	+	949.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 13 of 16)	intron (NM_001285459, intron 13 of 16)	-39183.0	NM_001287818	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	5.46725602197132	4.88294501302194	5.0091468539097	5.31735852318966	5.42839549035128	5.78332931215607	4.78860159332639	4.89057615299109	0.173689407225542	0.646735691159696	0.851401409677112
Merged-chr2-15056049-4	chr2	15055969	15056169	+	897.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029466, intron 1 of 5)	intron (NM_029466, intron 1 of 5)	707.0	NM_029466	75869.0	Mm.174068	NM_029466	ENSMUSG00000017418	Arl5b	4930587A11Rik|AW146430|Arl8	ADP-ribosylation factor-like 5B	protein-coding	4.0137737737473	3.62843951826127	4.01438923224741	3.79990833052042	3.96238166686227	3.82740759939143	3.74951746429065	4.18139411922501	0.211594958410262	0.642333635579611	0.849120718759996
Merged-chr14-45092516-4	chr14	45092407	45092607	+	753.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104396.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	4.18546430154088	3.80423035145165	4.05266353496221	4.01853199378072	4.01523686953665	4.02558926622454	3.83484185854476	4.26502556993371	0.0643298724394862	0.881576106677527	0.955384724180766
Merged-chr2-5714613-7	chr2	5714551	5714751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177343, exon 1 of 11)	5' UTR (NM_177343, exon 1 of 11)	111.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	5.76197023191919	6.0949524040377	6.23577677210926	5.788217843957	5.57477233890874	5.63227371135525	5.89741335194342	5.96673743535243	-0.333050949699224	0.223289220290108	0.531288765202394
Merged-chr13-9182045-4	chr13	9181954	9182154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88173.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	4.97548492054478	5.24742861108124	4.82104651111344	4.91042115133251	5.32015123728855	5.32049837340079	5.24298100224101	5.17535661533227	0.511310010888576	0.0934895917599449	0.334430377519405
Merged-chr4-101686552-4	chr4	101686440	101686640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30867.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	7.1034515616335	6.80857587725337	7.64532867366888	7.76346684313439	7.42503377335206	7.31977174637985	7.89593221696596	7.38891162039998	0.176140262591149	0.501529565511273	0.7692646023024
Merged-chr7-144981849-4	chr7	144981711	144981911	+	975.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41886.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	4.64052763105215	4.46627263741782	4.64130310620142	4.49779333401792	4.37795189245965	3.96515766266225	4.26021156268178	4.22887858264368	-0.786733581268471	0.0457206141714527	0.219251337068641
Merged-chr13-55021319-4	chr13	55021186	55021386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001206390)	promoter-TSS (NM_001206390)	99.0	NM_001206392	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	6.57712634827645	6.71976609072805	7.03785232437933	6.86284880096371	7.12599468287635	7.26129421806849	6.88954534299401	7.19076984934236	0.430000856956989	0.0382590261602136	0.196057539457008
Merged-chr1-34856254-2	chr1	34856154	34856354	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357425, intron 2 of 8)	intron (NM_001357425, intron 2 of 8)	6265.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	2.83647459208541	2.88117366036559	3.15450624848483	2.80547495881648	3.22078810464694	3.14731071102872	3.19640525381474	3.20787436468946	1.13578377399571	0.0476047318100598	0.225035713238322
Merged-chr9-110532362-4	chr9	110532256	110532456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081340)	promoter-TSS (NM_001081340)	-241.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	7.18666005066398	7.26511738124336	7.43671973864313	7.2736342258508	7.26247814243691	7.35339303888221	7.46379669139795	7.35404366939712	0.0878077098671637	0.622752582641755	0.838667008738363
Merged-chr1-152526971-2	chr1	152526871	152527071	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 15 of 17)	intron (NM_016846, intron 15 of 17)	98246.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	3.53212953114823	3.93807871673591	3.59687825777339	3.99914841261246	3.9707917234268	4.14716420623751	3.91258455484688	4.19059460720716	0.706243137364459	0.136793422022222	0.411349382676314
Merged-chr11-52043421-4	chr11	52043326	52043526	+	935.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	39205.0	NM_001166653	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	4.90224781745383	4.55623696299025	4.18708441247145	4.93176914165064	4.68185350876593	4.52490447010416	4.55224772223868	4.96249235248182	0.00572609773506998	0.988535419920402	0.99547221615543
Merged-chr7-27486383-2	chr7	27486283	27486483	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018820)	promoter-TSS (NM_018820)	-570.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	3.65413115389178	3.37269181700023	3.20379824491039	3.30488575957133	3.40757309508843	3.56444485010894	3.68460341251142	3.38978231198125	0.423490098556367	0.414426673431432	0.709044594374843
Merged-chr18-49488600-2	chr18	49488500	49488700	+	614.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34689.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	2.92224067896145	2.96291427381359	2.97909137098448	2.99518671268442	2.96912799221314	2.62141532284322	2.51490684686535	2.73530766569613	-1.09737472745202	0.115557361456677	0.376183737988787
Merged-chr1-191124016-5	chr1	191124016	191124216	+	852.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25702.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	4.08808636989414	3.79281478786957	3.94877527776126	3.74541963672962	3.91431023080607	3.66821149175686	3.93184950282182	4.43089041350179	0.33821742100653	0.472894737137823	0.750907386220789
Merged-chr17-34392443-4	chr17	34392243	34392443	+	874.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6477.0	NM_001001177	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	4.0228093941862	3.82000351676253	3.82016190969414	3.78057749732046	4.22807248209277	4.14694336862693	3.95862571958179	4.06706450210794	0.684720511701699	0.103893971011516	0.354237415616691
Merged-chr15-67767815-4	chr15	67767707	67767907	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	491049.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	5.20012256951401	5.39100091936893	5.47693928734261	5.50828155472243	5.45469946729215	5.30908161142774	5.60377903233071	5.62835129751323	0.16652239882016	0.553249121132534	0.800075562639021
Merged-chr1-172241092-4	chr1	172240986	172241186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013734, intron 11 of 22)	intron (NM_013734, intron 11 of 22)	17338.0	NM_013734	27222.0	Mm.482392	NM_013734	ENSMUSG00000007107	Atp1a4	-	ATPase, Na+/K+ transporting, alpha 4 polypeptide	protein-coding	5.7165007204868	5.91479960076107	6.13690599044292	6.17857819364959	5.7313634258227	5.69881390802589	5.78860915950369	5.90715396409355	-0.369526292871539	0.152421737479166	0.43653590520378
Merged-chr5-135712424-3	chr5	135712314	135712514	+	902.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	MTEb|LTR|ERVL-MaLR	23269.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	3.62356344311817	3.5133975975857	3.25693758397933	3.24298731381608	3.57679161944076	3.17096813534436	3.18415041977971	3.19328144952011	-0.3904757821506	0.492145091711152	0.763346782261791
Merged-chr2-12023572-4	chr2	12023460	12023660	+	995.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	245807.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	5.41124835857172	5.23199456089154	5.24165407506104	5.06118770927226	4.98121808896844	5.41463430784021	4.98447753044076	5.20724466856603	-0.149394550789485	0.632159775383091	0.843729759303872
Merged-chr9-77959959-4	chr9	77959859	77960059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 2 of 7)	intron (NM_134255, intron 2 of 7)	42594.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	7.04009087677586	6.85871451696764	7.12018262048322	7.40478416572248	6.47078017170807	6.41983426975736	6.64564994144125	6.5095965744912	-0.877016738346008	6.54212866881657e-05	0.00141840238598023
Merged-chr3-108923287-4	chr3	108923209	108923409	+	902.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11580.0	NM_001356292	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	4.27626576149831	4.59080299875574	4.326620497142	3.95661607494063	4.92292770364594	4.87719946981674	4.64595208100808	4.80698666371084	1.17525954119676	0.0020343711353205	0.0236995913324023
Merged-chr7-116608021-2	chr7	116607921	116608121	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103652.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	3.64742542647211	3.23114523633834	3.85829065451249	3.43768109965467	3.76041203467851	3.76964980203416	3.74127589467393	4.39879187623947	1.13704158109496	0.0311394689444388	0.171633596096965
Merged-chr3-84666231-4	chr3	84666132	84666332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177260)	promoter-TSS (NM_177260)	40.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	6.42276206586562	5.94517762693281	5.66804050619912	6.27979607806844	5.82915173243956	5.90087940848327	5.46139020481484	6.22034611502267	-0.37410756910947	0.212107223190064	0.516916493972183
Merged-chr2-93871036-3	chr2	93870934	93871134	+	791.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1877.0	NM_001033452	381411.0	Mm.9889	NM_001033452	ENSMUSG00000075023	Accsl	Gm1967	1-aminocyclopropane-1-carboxylate synthase (non-functional)-like	protein-coding	3.3760971180905	3.20147849343149	3.21417840656646	3.40584637826857	3.18290604326033	3.20258771385762	2.88114599694704	3.21251396405654	-0.687714457014277	0.22959506415193	0.538668581005189
Merged-chr5-134558322-3	chr5	134558223	134558423	+	884.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001013751, exon 1 of 1)	exon (NM_001013751, exon 1 of 1)	1848.0	NM_001013751	214292.0	Mm.425290	NM_001013751	ENSMUSG00000085957	Syna	Gm453|Gm52|syncytin-A	syncytin a	protein-coding	3.53348788946965	3.30720486587691	3.37952904901852	3.43871981082632	3.25255304034599	3.17993846735895	3.31106042695526	3.43142785970364	-0.438922250506068	0.40292648799737	0.700415280464131
Merged-chr5-21036301-4	chr5	21036201	21036401	+	949.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	RSINE1|SINE|B4	-1054.0	NM_001356590	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	5.03483144433534	5.378405842006	4.75809841395415	5.13220252552988	5.35558250927162	5.14022196541354	5.76216538276823	4.8403754167968	0.407188141896157	0.255871156931665	0.567467793489678
Merged-chr16-52031494-4	chr16	52031323	52031523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033238)	promoter-TSS (NM_001033238)	-126.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	8.18579999059395	8.15649737950148	8.77651882014089	8.55318964623671	7.89247954944011	7.86856270952376	8.22987255759418	7.95071669132192	-0.577919433068109	0.00400827748676577	0.0401380548725203
Merged-chr16-33932292-4	chr16	33932146	33932346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	34792.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	6.13356359982077	5.71551941712732	6.06027623285132	6.18216544125501	5.39239008049841	5.3291784602045	5.62796394478967	5.45309148362498	-0.974159146169098	0.000348474509625895	0.00572445583213977
Merged-chr11-72779521-4	chr11	72779393	72779593	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024926, intron 3 of 3)	intron (NM_001024926, intron 3 of 3)	16346.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	4.92591311138123	4.95102854385452	4.82280663084161	4.90266348863642	4.32712132675948	4.48069957924687	5.24576482998358	4.44581080246244	-0.461833481904808	0.245634012122546	0.556761562553599
Merged-chr14-105431754-4	chr14	105431653	105431853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045859, intron 1 of 2)	intron (NR_045859, intron 1 of 2)	4194.0	NR_045859	71362.0	Mm.410781	NR_045859	ENSMUSG00000115548	5430440P10Rik	-	RIKEN cDNA 5430440P10 gene	ncRNA	6.55989168558494	6.31225326551425	6.544167722889	6.60157650865134	7.05157836176041	6.75518366634675	7.29068363038933	6.78560533255308	0.680356843164469	0.00224744398214834	0.025583050568581
Merged-chr16-92865592-4	chr16	92865499	92865699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39525.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	7.31981810955562	7.1247652353665	6.94887051353444	7.27923898596902	7.06021628445956	7.11270751676336	6.81861997688537	6.66597930394161	-0.345615294374858	0.0983091729864746	0.343792307359943
Merged-chr9-96035572-3	chr9	96035473	96035673	+	919.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311130, intron 33 of 41)	intron (NM_001311130, intron 33 of 41)	80813.0	NM_011916	24127.0	Mm.291179	NM_011916	ENSMUSG00000032410	Xrn1	Dhm2|exo|mXrn1	5'-3' exoribonuclease 1	protein-coding	3.78344372581406	3.85721726699701	3.88515245014764	3.83142054505356	3.85697627837504	4.05445452680677	3.76881994656782	3.72822762226031	0.0492922423042528	0.911111562791679	0.966904162861598
Merged-chr10-111226645-3	chr10	111226525	111226725	+	832.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175489, intron 3 of 23)	intron (NM_175489, intron 3 of 23)	61823.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	3.39141074957591	3.3982069932714	3.39188515576527	3.27897596856795	3.14583926538341	3.06213729379623	3.37816740454558	3.33576047229431	-0.467592200646383	0.387134587782165	0.688104999843847
Merged-chr15-102471775-4	chr15	102471671	102471871	+	952.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001174073, intron 1 of 12)	intron (NM_001174073, intron 1 of 12)	1139.0	NM_001174073	18521.0	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	4.64540767490559	4.64321392797215	4.38683619305392	4.7448436597194	4.72896786127286	4.69750595923294	4.41439967849351	4.92246031975536	0.174335399975556	0.630390560915515	0.842829740700354
Merged-chr2-129183980-4	chr2	129183879	129184079	+	690.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3306.0	NR_045264	100048701.0	Mm.428544	NR_045264	ENSMUSG00000084826	AI847159	-	expressed sequence AI847159	ncRNA	3.86173464174483	3.38599140386478	3.77067353800205	3.39311304479906	3.95522794873206	3.62460746898306	3.43566434400548	3.44632654507877	0.0938662676518131	0.860592959506355	0.947291826627875
Merged-chr5-32746436-4	chr5	32746342	32746542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347332)	promoter-TSS (NM_001347332)	-100.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	8.42066654310442	8.52393205682282	8.51150224715168	8.4546709537631	8.27162919422193	8.44055260801528	8.66267034210818	7.9980544665256	-0.143070635343004	0.430832867426628	0.721309079893587
Merged-chr16-92692325-4	chr16	92692187	92692387	+	874.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 3 of 6)	intron (NM_001111022, intron 3 of 6)	5042.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	3.7024271621896	3.97808550238753	3.81681910512141	4.19261713456873	4.29675876129834	4.04300813212907	4.00131138241602	3.75910145763067	0.254658556454543	0.587645700069314	0.819326924567384
Merged-chr1-172148715-4	chr1	172148644	172148844	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357204, intron 1 of 13)	intron (NM_001357204, intron 1 of 13)	729.0	NM_001357204	98193.0	Mm.159915	NM_153555	ENSMUSG00000026554	Dcaf8	AA408877|AA433120|AA792214|AU018973|C76055|D1Dau35e|D1Ucla4|H326|Wdr42a	DDB1 and CUL4 associated factor 8	protein-coding	4.69108591530889	4.48759748323979	4.8013701989705	4.40072016625698	4.64284674430836	4.900973081856	4.66971075744431	4.68875580418152	0.295863591554611	0.404217657150204	0.701366930244469
Merged-chr17-86972052-4	chr17	86971972	86972172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	8961.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	7.35202526384849	6.97593690306481	7.0652168633845	7.29975034693292	7.07914752749161	7.07585533524124	6.89067433329187	6.6857416795857	-0.330442369318347	0.112375335339266	0.370604827601057
Merged-chr9-86467174-4	chr9	86467027	86467227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177208)	promoter-TSS (NM_177208)	-27.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	7.43587979410764	7.25178070257775	7.27447855425016	7.27662065785084	7.4862113825763	7.51486626984081	7.5770621785046	7.36340733553555	0.240387868392371	0.168378034129547	0.46044719702282
Merged-chr13-37462289-4	chr13	37462171	37462371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116926.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	6.31026054761744	6.0604036023081	6.52245663324747	6.57451755183939	5.60734586054469	6.04967231652328	6.00461592797889	6.07445501300619	-0.70050373408338	0.00728708547769646	0.0626956538711134
Merged-chr17-10704325-3	chr17	10704221	10704421	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	L1MEf|LINE|L1	135870.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	5.44355591703257	5.38853031352614	5.62547495017484	5.56355511453754	3.90124541603188	4.80357234766637	4.17332745475026	4.469413985429	-2.42036539841889	1.32257037624817e-09	8.33724389471005e-08
Merged-chr17-29114095-3	chr17	29113979	29114179	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20310.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	5.49545799151738	5.84239156974455	5.08087465789238	5.2667468402601	3.87802877090022	4.27321127514285	4.05561628063108	3.93654967898862	-3.29649973098388	1.56603355991102e-13	1.97639543902317e-11
Merged-chr1-136618777-4	chr1	136618694	136618894	+	976.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6107.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	5.33805785521901	4.93165909739801	5.10550973929307	5.44543139659714	4.76269490446195	5.03511674006357	4.91049140995639	4.81585488693241	-0.688457253691421	0.0365262800883634	0.190204410740334
Merged-chr16-21787823-4	chr16	21787701	21787901	+	980.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023737)	promoter-TSS (NM_023737)	33.0	NM_023737	74147.0	Mm.28100	NM_023737	ENSMUSG00000022853	Ehhadh	1300002P22Rik|HD|L-PBE|LBFP|LBP|MFP|MFP1|PBFE	enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase	protein-coding	4.93487728793618	4.99924053223555	5.3234442336352	5.02150671088086	4.39522996533876	5.00157312491711	4.80342925327914	4.78457426846696	-0.654673325133724	0.0621954885629638	0.263889644755794
Merged-chr12-111878387-4	chr12	111878288	111878488	+	862.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011625, intron 1 of 16)	intron (NM_011625, intron 1 of 16)	29667.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	4.55776691028998	4.56683256447979	3.97036128528375	4.04773064166745	4.14776352458087	4.35678085284001	4.42389965185212	4.35996295220257	0.0354105350612385	0.933604273378117	0.976058907139535
Merged-chr2-150673976-4	chr2	150673854	150674054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5714.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	7.43809582993758	7.25426180945717	8.00932802424715	7.99049311069021	7.2213751370654	7.01190988205203	7.292111557643	7.32356208844912	-0.669515866899044	0.00384255228571231	0.0388286526326969
Merged-chr2-43561390-4	chr2	43561296	43561496	+	958.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289593, intron 1 of 12)	intron (NM_001289593, intron 1 of 12)	6071.0	NM_027552	70789.0	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	5.01530638632937	4.32056812747196	4.85679660154881	4.87231758451466	4.71816719543165	4.33660735703011	4.83318654055429	4.63130165656491	-0.305341827249183	0.426312033131546	0.717787444264229
Merged-chr19-6334916-4	chr19	6334815	6335015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168488)	promoter-TSS (NM_001168488)	-64.0	NM_001168488	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	7.84114703034557	8.07947605647266	7.43000437823339	7.72916060019633	7.71518275992812	7.8048022560471	7.71366051653887	7.4146548593047	-0.159072455355428	0.430098568486296	0.720740306563559
Merged-chr3-14578663-4	chr3	14578581	14578781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007892)	promoter-TSS (NM_007892)	10.0	NM_007892	13559.0	Mm.153415	NM_007892	ENSMUSG00000027552	E2f5	AU024671|E2F-5	E2F transcription factor 5	protein-coding	8.24483437093366	8.45774095705379	9.08598286164527	8.51900490885365	8.27100130899512	8.54393459380856	8.42617505610116	8.21656663702515	-0.310350872711868	0.138819827011102	0.414381792154761
Merged-chr8-66437026-4	chr8	66436934	66437134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	49496.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	5.40350152972554	4.83242847184876	4.91536789943224	5.3186248490181	4.82152701606138	5.05296099303879	5.03251734742702	5.24031189196167	-0.214118505032603	0.527527579100231	0.784392846308238
Merged-chr7-49004537-3	chr7	49004400	49004600	+	917.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	45427.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	3.95094238033827	3.7075232067739	3.95153402055711	4.29662308040897	3.82202354446451	3.55699773149843	4.06635377832664	3.63196499402147	-0.617840470905877	0.211071822564774	0.515716175112166
Merged-chr19-34471962-4	chr19	34471838	34472038	+	991.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3197.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	5.55765033451677	5.72966184656927	5.24404923116838	5.26351432363663	5.61459677408723	5.45091756826886	5.11949949228393	5.17451032786984	-0.166566488186751	0.596413155131642	0.824696790137446
Merged-chr9-120564655-6	chr9	120564553	120564753	+	904.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178676, intron 10 of 10)	B4|SINE|B4	-6864.0	NM_025974	67115.0	Mm.289810	NM_025974	ENSMUSG00000025794	Rpl14	3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14	ribosomal protein L14	protein-coding	3.88119322279533	4.28119521994656	4.69278695651316	4.22935734403409	4.36089722138772	4.23678306734098	4.45370592344342	4.68955093705978	0.342386516265734	0.420764951747389	0.713562100934609
Merged-chr13-34277883-4	chr13	34277812	34278012	+	893.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	67270.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	4.68208898945206	4.24557993192392	4.31823816765485	4.20453245626121	4.47097311067679	4.16030993254124	3.79255776968459	3.97924204051474	-0.570457763223128	0.209188582454644	0.513577117801228
Merged-chr8-33384346-3	chr8	33384222	33384422	+	899.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122822, intron 1 of 33)	intron (NM_001122822, intron 1 of 33)	1205.0	NM_001122822	22427.0	Mm.228805	NM_011721	ENSMUSG00000031583	Wrn	AI846146	Werner syndrome RecQ like helicase	protein-coding	3.52174137427614	3.51520112538774	3.62112813313405	3.79422015646257	3.02397188861171	3.41188696437959	3.09210750602224	3.23403592701931	-1.61739567803529	0.00426426488981676	0.0421564042489259
Merged-chr9-119970325-2	chr9	119970225	119970425	+	621.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153287)	TTS (NM_153287)	12698.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	3.19033445641058	3.50778867648149	3.2485392411277	2.9066720016874	3.09451499269674	3.36251589215755	3.11904904339063	2.99915249738646	-0.296844710006477	0.619755610530207	0.836815854805554
Merged-chr6-3475105-3	chr6	3475020	3475220	+	734.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178899, intron 4 of 9)	intron (NM_178899, intron 4 of 9)	19378.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	3.17937316067706	2.86050245194791	2.90410863363001	3.04056045767181	2.57781254598117	2.81122240682794	2.76630690754239	2.96267912374533	-1.02094618876095	0.117567822089951	0.379250747853942
Merged-chr14-25800347-4	chr14	25800231	25800431	+	918.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31475.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	3.79674943924708	4.15502247335957	3.95792067377864	4.23499558355988	4.0414340684376	4.22490890900285	4.08281900914245	3.73715367160166	-0.074075285179191	0.868817287943778	0.950862893339999
Merged-chr18-3010342-1	chr18	3010242	3010442	+	812.0	f0_balb.idr	Intergenic	Intergenic	113070.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	3.11406887454539	2.78854190868624	3.30829924078188	3.24213877377529	2.5532973042862	2.55158145841352	2.60200648586386	2.75284043395281	-2.71836186678686	0.000451441431958634	0.00710165086611591
Merged-chr6-142991766-4	chr6	142991653	142991853	+	925.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27301.0	NM_011374	20449.0	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding	4.43296153424339	4.55844532768083	4.38965994082047	4.97413155331302	4.47774111834141	4.47298605140109	4.12770669040646	4.51444205304039	-0.502841442124257	0.21412287798959	0.519788161034397
Merged-chr9-50739412-4	chr9	50739318	50739518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025865)	TTS (NM_025865)	-1683.0	NM_001311069	330938.0	Mm.82598	NM_178118	ENSMUSG00000032064	Dixdc1	4930563F16Rik|BC048182|Ccd1|Ccd1Aalpha1L|Ccd1Abeta1L|Ccd1BalphaL|Ccd1BbetaL|Ccd1CL|mKIAA1735	DIX domain containing 1	protein-coding	6.61268991773056	7.16191599726336	6.76876460778699	6.81739178143406	6.80144556965689	7.19499125120495	7.01870539100025	6.45152082555749	0.0471813937611449	0.845677242861806	0.941557049643182
Merged-chr16-87698918-4	chr16	87698817	87699017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007520)	promoter-TSS (NM_007520)	-37.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	8.44168852660757	8.64010174123186	8.47827148447666	8.30273857642442	8.49044951402753	8.40984969776956	8.57489375633269	8.34773471732131	-0.00954405760527988	0.952328210711441	0.983110341498473
Merged-chr1-176816970-4	chr1	176816870	176817070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 1 of 18)	MLTR11B|LTR|ERVK	2310.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	7.07275944384808	7.12789112604317	7.2209699018402	6.94655130800686	6.99970518912729	7.25077811197299	7.39009694536316	6.66198892025167	0.0165926194979743	0.940290960780326	0.978522329562017
Merged-chr9-123941553-4	chr9	123941463	123941663	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27129.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	5.53317463913531	5.44099059995067	5.73415636540044	6.12475822028415	5.29433567347872	5.1482050375653	5.16951795107748	5.6587959326809	-0.722081456898567	0.0241181373919304	0.144918529581312
Merged-chr10-8886141-4	chr10	8886083	8886283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175155)	promoter-TSS (NM_175155)	-113.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	7.38600456019999	7.75684881238104	7.61541784614498	6.92640106982411	7.35309892076957	7.80898656890074	7.17976281670883	7.42154112732646	0.0114008822079225	0.962718211372044	0.986699874256659
Merged-chr9-83570074-3	chr9	83569964	83570164	+	885.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	21726.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	3.34239488996945	3.43360747720402	3.34277474416303	3.09009409998776	4.67718141079169	4.10459027724117	4.48433944540455	4.69202044819187	3.58175080056934	2.74017358250874e-13	3.27253046022466e-11
Merged-chr8-47673612-4	chr8	47673526	47673726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023503, intron 1 of 1)	intron (NM_023503, intron 1 of 1)	1533.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	7.7397097258056	7.72762223134919	8.2365427248785	7.54352029117559	7.78078555668013	8.16765846636934	7.76641197419271	7.74382772773206	0.0559239271707993	0.792928340954295	0.919802301661795
Merged-chr11-118349080-4	chr11	118348985	118349185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011594, intron 1 of 4)	intron (NM_011594, intron 1 of 4)	6326.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	6.00101161850254	5.67789275044389	5.8248497865062	6.26968998153972	5.71612172318299	5.45044346564919	5.77135536832614	6.01824966191787	-0.359613494164995	0.207115838976385	0.511139945305461
Merged-chr7-35269851-4	chr7	35269719	35269919	+	960.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B2|LTR|ERVK	48621.0	NM_026181	67471.0	Mm.358705	NM_026181	ENSMUSG00000063808	Gpatch1	1300003A17Rik|ECGP|Gpatc1	G patch domain containing 1	protein-coding	4.51416355064964	4.51510357220519	4.51486840884877	4.53519059947255	4.45492400878212	5.10533666055789	5.06167683586257	5.02501147109173	0.847037913181415	0.0205958942241411	0.130566009527978
Merged-chr15-79546146-4	chr15	79546072	79546272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040187, intron 1 of 12)	CpG	387.0	NM_199079	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	5.58945568025877	5.44427855997758	5.56422485621516	5.24183294433147	5.54813151296582	5.37800822548732	5.39729018837173	6.00140450977159	0.264743615721811	0.376771892019878	0.679493425105982
Merged-chr4-122848215-4	chr4	122848088	122848288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008917, intron 4 of 8)	intron (NM_008917, intron 4 of 8)	11961.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	7.54496459998767	7.49791103819341	7.07932293901335	7.38646617166967	7.5494464464155	7.45826546222674	7.65081417572178	7.54105430405494	0.214791909169866	0.248220405311995	0.559293454564815
Merged-chr16-10480016-4	chr16	10479898	10480098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302619)	promoter-TSS (NM_001302619)	-74.0	NM_001302619	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	5.5699876765981	5.52698990732438	5.40786070455365	6.00406612037811	5.7240431371916	5.10344340397151	4.93845634253379	5.07561138778555	-0.686316131523485	0.0494389722772927	0.23007627379702
Merged-chr11-70445645-4	chr11	70445540	70445740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6291.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	5.39886210339809	5.42497121580659	5.05010836388854	4.82705986865202	5.24643779750163	5.5163952217902	5.42660633169145	5.33921896746979	0.360713603699801	0.258116496077292	0.569965067227543
Merged-chr7-48983444-5	chr7	48983347	48983547	+	687.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	24374.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	3.11597391667197	3.21010565223976	3.38872341713421	2.94241747215808	3.11530470745284	3.02796848609508	3.42086389332499	3.05274221721594	-0.00455603697294116	0.993809521994497	0.997702270136287
Merged-chr12-113222226-4	chr12	113222153	113222353	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36350.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	5.88865283794799	6.00433468447131	5.29755686615515	5.91277231731363	5.20217245595976	5.75000383428559	5.33764123248039	5.94829358524452	-0.370013854139336	0.252542456496817	0.563825160206146
Merged-chr7-49923133-3	chr7	49923041	49923241	+	890.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146013, intron 5 of 15)	PB1D11|SINE|Alu	11441.0	NM_148931	104245.0	Mm.207053	NM_148931	ENSMUSG00000039728	Slc6a5	Glyt2|prestin	solute carrier family 6 (neurotransmitter transporter, glycine), member 5	protein-coding	4.30479357156798	4.14315320799492	4.1491699560389	4.03268008533512	3.28209553755954	3.88559946120988	3.69178511681942	3.70407234632835	-1.50745847287712	0.00241914925437228	0.0270615471910992
Merged-chr18-61224466-4	chr18	61224375	61224575	+	977.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146086, intron 1 of 21)	intron (NM_146086, intron 1 of 21)	3976.0	NM_146086	225600.0	Mm.391106	NM_146086	ENSMUSG00000024575	Pde6a	Pdea|nmf282	phosphodiesterase 6A, cGMP-specific, rod, alpha	protein-coding	5.07383087465336	5.28218216645569	4.95669213999978	5.200716172378	5.59115200287571	5.49161011770309	6.12004459523657	5.59066450200303	1.00849315172532	0.00094576803640787	0.0128667475274227
Merged-chr9-51008630-4	chr9	51008520	51008720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 1 of 15)	CpG	453.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	6.22069897723656	6.22461703318977	6.1837892123218	5.82471574032108	6.06515416419037	5.92973970758553	5.98835078622951	6.40780083937577	0.00391377060156358	0.987869128296614	0.995370064932717
Merged-chr1-9813105-3	chr1	9813002	9813202	+	894.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177547, intron 1 of 16)	RSINE1|SINE|B4	14972.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	3.89700822122291	3.60709587741381	3.99185704120387	4.00539085296631	3.57887122760953	3.91619238054815	4.01826735847994	3.89526465326072	-0.0975164393142278	0.834896457693275	0.937121148025927
Merged-chr4-137389168-4	chr4	137389066	137389266	+	892.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20625.0	NM_001126318	242711.0	Mm.475541	NM_001126318	ENSMUSG00000078520	Cela3a	Gm13011	chymotrypsin-like elastase family, member 3A	protein-coding	4.09333212267166	4.49845991381618	4.23612710140566	4.41601759326849	4.21029428217354	4.21838959303763	3.97399416909768	4.27755814288819	-0.380220599895795	0.349395034196026	0.656941686201213
Merged-chr13-60177701-3	chr13	60177607	60177807	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008086)	promoter-TSS (NM_008086)	-172.0	NM_008086	14451.0	Mm.22701	NM_008086	ENSMUSG00000052957	Gas1	AW554192|Gas-1	growth arrest specific 1	protein-coding	3.37364796488857	3.34704976931459	3.6253585320276	3.47476971156555	3.10725081137761	3.17186468107675	3.24635817834397	3.42657495545943	-0.803466489684004	0.138128258631146	0.413493364199996
Merged-chr6-108168124-3	chr6	108168027	108168227	+	962.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145937, intron 3 of 8)	ORR1E|LTR|ERVL-MaLR	17456.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	3.724997114982	3.48652006656594	3.60394779427829	3.96505226861258	4.073369689423	3.90427018780264	4.33575980552336	4.3183789325043	1.19833578700694	0.0133759567161584	0.0969561516354041
Merged-chr11-118423455-4	chr11	118423330	118423530	+	857.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4312.0	NM_001267592	76025.0	Mm.177551	NM_029502	ENSMUSG00000025575	Cant1	5830420C20Rik|Apy1h|D11Bwg0554e|Entpd8|SCAN-1|Shapy	calcium activated nucleotidase 1	protein-coding	4.00253843995161	4.13965126204399	3.41863237088825	3.79589123875255	4.04114588324897	4.12687112595605	4.11854247483168	3.95263644103534	0.528276206215033	0.26266386744151	0.574445092878026
Merged-chr8-30840286-1	chr8	30840186	30840386	+	568.0	f0_c57.idr	Intergenic	Intergenic	-249241.0	NM_025869	66959.0	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	2.75618615814376	2.81789989374307	2.83278456618881	2.57523310831264	3.59390615884757	3.33647233084107	3.20566066441637	3.37512406335941	2.84888712856743	2.62361488851029e-06	8.37051923573618e-05
Merged-chr12-76583046-3	chr12	76582971	76583171	+	910.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013675, exon 36 of 36)	3' UTR (NM_013675, exon 36 of 36)	-35146.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	3.7028996403607	3.65846901447477	3.46125231412232	3.53263337857413	3.20781832716852	3.13150941487473	3.33720169723109	3.0924043895166	-1.44747684874561	0.0088347766028766	0.0721602150878911
Merged-chr8-10946204-4	chr8	10946063	10946263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17706.0	NR_135302	665306.0	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	6.57472880523449	6.65349547717475	6.9100787897891	6.93436880617996	6.71835040408936	6.20547143489773	6.40827642829026	6.22462247593274	-0.525027722670507	0.027602794154194	0.15849784487749
Merged-chr18-76241864-4	chr18	76241774	76241974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010754, exon 1 of 11)	5' UTR (NM_010754, exon 1 of 11)	173.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	6.49432704777478	6.43411620385994	6.73924025585062	6.56334761982346	6.74861836742689	6.45330227134981	6.73216200069196	6.10017615894093	-0.0259105400727573	0.914060574832015	0.967873172075434
Merged-chr15-84995713-2	chr15	84995584	84995784	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-7713.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	5.18415644111189	4.70960854524217	4.73564062669867	4.88738830938209	5.14920498588421	4.9526498853766	5.06950950071952	4.99373332283257	0.311740818379512	0.337220444819584	0.647016127715841
Merged-chr5-32863616-4	chr5	32863493	32863693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170567)	promoter-TSS (NM_001170567)	-128.0	NM_177786	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	7.47058980222383	7.43860565389969	6.95000244061992	7.13723107896874	7.31280206972271	7.39842360316605	7.22870222860318	7.32257522225565	0.0715312775475161	0.719868966323932	0.888028373825666
Merged-chr3-130795003-4	chr3	130794883	130795083	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64585.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	5.03350137329542	4.64485070528921	5.35307638240988	5.24310192702264	4.82712029305852	4.59652197584646	5.00971973728831	5.0309090716896	-0.435235052102747	0.221125539075822	0.529183160605114
Merged-chr16-17803071-5	chr16	17803039	17803239	+	902.8666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153790, exon 4 of 11)	exon (NM_153790, exon 4 of 11)	5857.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	3.83297680040878	4.19244843809841	4.18389812624497	3.7822271822194	4.16776875354011	4.11914730415023	4.0752269705864	4.34520882774962	0.470116752284282	0.272106234078439	0.583670356609054
Merged-chr2-27667990-4	chr2	27667874	27668074	+	935.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9227.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	4.74622866164843	4.43693889812702	4.23970362728844	4.59551123615531	4.66895974581294	4.51608831867139	4.57776483345172	4.74382301038487	0.238939649693549	0.513657932082696	0.776626777135012
Merged-chr16-25958868-4	chr16	25958772	25958972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146912.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	6.07715119345321	6.06786369569853	6.21470345164529	6.532064293566	5.96200984479171	5.60195891140472	5.94031050925922	5.89745288537368	-0.608701884125526	0.0196368959406148	0.126400308930821
Merged-chr17-15021694-3	chr17	15021591	15021791	+	985.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123372, intron 11 of 11)	intron (NM_001123372, intron 11 of 11)	-11507.0	NM_198104	21647.0	Mm.440445	NM_011560	ENSMUSG00000079707	Tcte3	D17Leh117c|LC2|Tcte-3|Tctex-2|Tctex-4|Tctex2|Tctex4	t-complex-associated testis expressed 3	protein-coding	3.02892250510795	2.9401256302757	3.02924686421441	2.39293181464401	4.37572930907412	4.28644144180673	4.34775569987401	4.33420955531628	8.19028775852435	1.19757086243001e-17	2.94954658882026e-15
Merged-chr9-50856486-3	chr9	50856417	50856617	+	733.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034085)	promoter-TSS (NM_001034085)	-407.0	NM_001034085	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	4.04932858079097	3.14782553713185	3.47093345833081	2.74935533157355	4.54100953708337	4.22920096345205	4.49648814150442	4.22369652053895	2.39821396476775	0.0278427612628072	0.159489418105487
Merged-chr6-24645524-4	chr6	24645428	24645628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028459, intron 1 of 10)	intron (NM_028459, intron 1 of 10)	19467.0	NM_001167745	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	6.9524752054914	6.78141656987618	6.90397842199151	6.85044145910605	6.56494605656226	6.59189308660052	6.60261645286461	6.49958564861435	-0.436156884953724	0.0275590778393457	0.158380587242714
Merged-chr3-67463824-4	chr3	67463712	67463912	+	996.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016753)	promoter-TSS (NM_016753)	95.0	NM_016753	17035.0	Mm.2632	NM_016753	ENSMUSG00000047557	Lxn	-	latexin	protein-coding	4.75811790149243	5.14313337554484	5.20772414976615	5.09907706283188	4.76658433383042	5.05246157795888	4.92690103480056	5.08223783136512	-0.220348753078204	0.497570021755876	0.767090702736496
Merged-chr2-30077615-4	chr2	30077512	30077712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1086.0	NM_153805	263803.0	Mm.233843	NM_153805	ENSMUSG00000026785	Pkn3	AW209115|BC034126	protein kinase N3	protein-coding	5.89119579229642	6.03683425493786	6.00357389254101	5.6656499826835	5.98388839207836	6.19908575984852	5.79086186513422	6.04116657109368	0.184441131764969	0.469848485554152	0.748648947719156
Merged-chr10-5208424-3	chr10	5208286	5208486	+	862.849976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347711, intron 86 of 145)	intron (NM_001347711, intron 86 of 145)	-13679.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	3.237862655221	3.16978634972687	3.29262331192682	3.54377961295659	2.94638443438158	3.16942142552654	3.04992697305757	2.92501949063679	-1.24177615279244	0.036167600105892	0.189080489015849
Merged-chr10-82969788-2	chr10	82969693	82969893	+	640.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3A|LINE|L1	-15704.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	3.47849901446018	3.0109952456713	3.33755722302563	3.06146929651881	2.88410759970763	2.81528367261672	3.10831390730685	2.99469466478408	-1.14198721021811	0.0670451743994356	0.276153490456422
Merged-chr17-71182459-4	chr17	71182373	71182573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1059.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	6.70384553080769	6.61562167896437	6.5516005285796	6.91506699590885	6.75624632710557	6.4574918988057	6.32700664505021	6.49709169586614	-0.270952078427923	0.2311266332712	0.540647495139858
Merged-chr3-27691649-4	chr3	27691558	27691758	+	972.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	intron (NM_001356953, intron 1 of 26)	18794.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	4.8890061553345	4.87096678237074	4.53939735871199	4.51375115990672	4.5002504215079	4.84213934601874	5.05359291843976	4.85202756022942	0.235974905154603	0.515839087228757	0.777818247852043
Merged-chr7-139971612-3	chr7	139971518	139971718	+	648.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347613)	TTS (NM_001347613)	7137.0	NM_001347614	381933.0	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	3.70833477646714	3.10646537868673	3.58115322581916	3.27296291010774	2.97290025121106	2.91514141926032	3.08439119951758	3.09347186527818	-1.64678142105524	0.00800985146774199	0.0672644192570088
Merged-chr6-54718980-4	chr6	54718878	54719078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37354.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	5.98089102856288	5.86764426784398	6.10412177804668	6.48285706869103	5.73485559509518	5.36087099264351	5.79292402885448	5.84244687053474	-0.717009622776819	0.0114598401432958	0.0869523463980016
Merged-chr9-40710222-3	chr9	40710184	40710384	+	977.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	B3A|SINE|B2	24320.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	4.89417281996191	4.8272051575731	4.80568782889203	5.10673605559039	3.26389971394639	3.61933052414456	3.62828238044231	3.71038482844414	-4.41839811595228	1.62410657378035e-12	1.67055320542069e-10
Merged-chr16-93711744-4	chr16	93711634	93711834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026700)	promoter-TSS (NM_026700)	-173.0	NM_026700	70028.0	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	8.77181373858484	9.09728513349966	8.7002995844686	8.66734865050568	8.96933556523285	9.02792594251959	9.0606452643792	8.70795389736397	0.160592227581336	0.347858535559771	0.655739918695498
Merged-chr14-22020832-7	chr14	22020707	22020907	+	930.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 1 of 6)	intron (NM_028275, intron 1 of 6)	1095.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	3.80691573617639	3.61720840937119	3.85717283665574	3.80792441599329	3.72550541550906	3.92737779005222	3.79174669793794	3.9026573686672	0.170158892548432	0.703533343220787	0.880741625705568
Merged-chr4-63590128-4	chr4	63590030	63590230	+	910.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	10634.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	4.26524219396669	4.39127289586181	5.16855102124364	5.00147687354445	4.28307379530237	4.63715682494467	4.56738102943069	4.62597253401559	-0.512358346796117	0.224991343788655	0.533383973104412
Merged-chr9-15029226-3	chr9	15029141	15029341	+	695.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019482, intron 1 of 4)	intron (NM_019482, intron 1 of 4)	16237.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	3.40609487451104	3.28925825009313	3.51806703500428	3.23063588598959	3.66242495279113	3.52152043284112	3.4499884637467	3.66677380923435	0.766760485669723	0.12416564202694	0.390992812317244
Merged-chr8-120324804-4	chr8	120324740	120324940	+	970.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96610.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	4.64091757255135	4.66076801002596	4.83856767406591	4.69809201283417	5.08607868390712	5.01115599163683	4.81562709145855	5.12700764854907	0.627865380085708	0.0517021895182422	0.236362908323758
Merged-chr16-23999607-4	chr16	23999489	23999689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10737.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	4.76625857143787	5.81761527693194	4.84651533101855	4.43442790738942	5.10423026286834	5.20120770171075	4.74440386065348	4.67942728644792	-0.252013972628742	0.571724055552991	0.810781529929199
Merged-chr12-34725334-4	chr12	34725267	34725467	+	889.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	L2|LINE|L2	191728.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	5.04522222675479	4.51328774157594	4.89415738513596	4.92980425466073	4.51234463753682	4.18660164483703	4.69850209337223	4.38074273581167	-0.863549264364201	0.0237637708350179	0.143418809925872
Merged-chr14-75057067-4	chr14	75056962	75057162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	41035.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	7.33628004589715	7.67675376981832	7.13769745380754	7.4749247498859	7.20143138667036	7.59397491411239	7.3802584322683	7.05836503597951	-0.1433872644577	0.498145318986388	0.767527884064595
Merged-chr5-135537486-4	chr5	135537389	135537589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	7633.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	6.1184216901063	5.9475307585285	5.75103374058868	5.88567907683142	5.76306194800463	5.97553155147009	5.72191931324175	5.55744389741053	-0.27294109867439	0.289831263356078	0.601915892545243
Merged-chr13-67331304-4	chr13	67331201	67331401	+	976.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177622, intron 1 of 4)	ID_B1|SINE|B4	1259.0	NM_177622	218314.0	Mm.289695	NM_177622	ENSMUSG00000057842	Zfp595	A230042K10Rik|Rslcan23	zinc finger protein 595	protein-coding	5.39117443442251	5.30604303161661	4.77216703915756	4.81878517293117	5.43124552816266	5.59096995566146	5.30948070040814	5.0099458658088	0.480474497195083	0.157890904281763	0.444708083164274
Merged-chr2-38797287-4	chr2	38797196	38797396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010264, intron 3 of 10)	intron (NM_010264, intron 3 of 10)	-12781.0	NM_001159549	14536.0	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	5.38274375853845	5.3521848617383	5.35165396782725	5.64324146599622	5.8796845427791	5.7361686575614	5.98657618909066	5.75967509107532	0.647697623957625	0.016675227576331	0.113062109321362
Merged-chr4-35224239-4	chr4	35224133	35224333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	MER44B|DNA|TcMar-Tigger	1647.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	6.56913322975544	7.08367600349663	6.53662522181936	6.11173488600613	7.30791213227827	7.21288881901297	6.55299474860542	6.34886030374324	0.432229846431104	0.161626596378171	0.450552968731959
Merged-chr2-122611819-4	chr2	122611701	122611901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025961)	promoter-TSS (NM_025961)	-524.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	6.72018650398365	6.78252755008561	6.69214305366541	6.73874715924886	6.66761987213679	6.51363448220966	6.78395178007644	6.33107395352322	-0.207671638429821	0.325630330869719	0.637197012260501
Merged-chr15-74957086-4	chr15	74956940	74957140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008529, intron 1 of 3)	intron (NM_008529, intron 1 of 3)	1934.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	5.86115245572708	5.75557900075536	5.99962212751066	6.40919069828234	5.99938636673188	5.51554938166833	6.41723065736887	6.01683333406545	-0.0290888577054039	0.924011118422137	0.971896610092346
Merged-chr2-157426332-3	chr2	157426231	157426431	+	981.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 1 of 13)	intron (NM_001025395, intron 1 of 13)	2038.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	4.43784811068832	4.37106547497888	4.400700129899	4.14749168118348	3.82027916456929	4.00967397539511	4.1276987513356	4.04575983215315	-0.872712531924066	0.0378041133228612	0.194384091758141
Merged-chr13-14613130-4	chr13	14613032	14613232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029271)	promoter-TSS (NM_029271)	-95.0	NM_029271	75398.0	Mm.36511	NM_029271	ENSMUSG00000015672	Mrpl32	0610033O15Rik	mitochondrial ribosomal protein L32	protein-coding	9.3135029894853	9.20363542557981	8.93922408651424	9.42612072973933	9.30947782027762	9.41982974898287	9.43427539301407	9.06837036380892	0.0972090456523991	0.566196014073832	0.807835530970224
Merged-chr5-24454464-4	chr5	24454370	24454570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359881, intron 1 of 15)	intron (NM_001359881, intron 1 of 15)	2293.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	5.77353717675109	5.96309514901886	5.53979591015849	5.99133000698722	5.58495174479903	5.6876812922523	5.51211786587483	5.69700171640508	-0.371648339594713	0.164686817425376	0.454900556624874
Merged-chr5-140108086-4	chr5	140107977	140108177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359025, intron 14 of 17)	intron (NM_001359025, intron 14 of 17)	66841.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	7.1241215861528	7.18172725042922	7.01690452890636	7.37343597308595	7.22526767369335	6.71123202752721	6.99397905046382	7.16567212738896	-0.196255473120687	0.349667370010288	0.657179883362987
Merged-chr16-18617838-4	chr16	18617742	18617942	+	891.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4561.0	NM_001001999	14724.0	Mm.475622	NM_010327	ENSMUSG00000050761	Gp1bb	-	glycoprotein Ib, beta polypeptide	protein-coding	4.32828976306618	4.35568925626989	4.14925610118346	4.24732625162792	4.23844937340097	4.27441285136496	4.08314347201064	4.326225328107	-0.0950798038562101	0.806970583130603	0.925575415525044
Merged-chr10-59964935-5	chr10	59964760	59964960	+	994.371399	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13090.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	4.3201078639465	3.62916242451915	4.27844284757404	3.80484496010745	4.57622389663258	4.64628064037318	4.02569311831367	4.04051627680748	0.796368277220083	0.0982642059087934	0.343696633380086
Merged-chr9-64018072-5	chr9	64017928	64018128	+	673.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 1 of 3)	(TCTG)n|Simple_repeat|Simple_repeat	4031.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	3.08161962967956	2.81247804875395	3.13914203606742	2.97181513899491	3.02779131069165	3.06835094698337	3.18063888124916	3.02074504265794	0.296751720525712	0.607059874403506	0.829771416202606
Merged-chr1-125560476-4	chr1	125560371	125560571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356294)	promoter-TSS (NM_001356294)	-124.0	NM_001356294	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	8.92938314594461	9.21154057810445	9.10899446387632	9.08210717721853	8.91330654147316	9.10853612525539	9.1041378080698	8.93268244126203	-0.0894241612404468	0.545543124317258	0.795945900838425
Merged-chr8-110604773-4	chr8	110604669	110604869	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172916, intron 85 of 86)	intron (NM_172916, intron 85 of 86)	-13798.0	NR_151674	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	4.06073726666986	4.30035169764344	4.31744661224812	4.55044536998548	4.45449919540439	4.44631704362542	4.78905657526046	4.67703337032631	0.587135863346887	0.136529535369785	0.411042630338623
Merged-chr13-9430133-3	chr13	9430010	9430210	+	723.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	153585.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	3.06085979805255	3.14344530459216	3.17372199308478	3.01079500852229	2.79304832528663	2.83553651058527	2.7944962375797	3.27494196174693	-0.663789622427964	0.288411067099368	0.60040784131807
Merged-chr17-67246693-4	chr17	67246670	67246870	+	929.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	107689.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	3.56546520375776	3.65566161610949	3.50145850449495	4.11427332329172	3.94273277347379	3.96978989129787	4.18162720457251	3.99042352834499	0.738068934147729	0.144970842276704	0.424163709136648
Merged-chr5-66129002-3	chr5	66128913	66129113	+	773.8555299999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	Lx9|LINE|L1	21965.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	2.92066909244858	3.29973036773653	2.9971168424932	2.64697668070313	3.57125773729628	3.61228648342091	3.42357850332681	3.76615377931204	2.34915752936438	0.000120764246412613	0.0023725857839921
Merged-chr13-49197020-4	chr13	49196910	49197110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013610)	TTS (NM_013610)	9463.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	7.83599153183177	7.64051942774897	7.61086421241558	7.97987669815154	7.67338784565867	7.7340292687785	7.75430037724685	7.81712556123986	-0.0543965164831499	0.758491077478858	0.905150997617068
Merged-chr11-70506618-4	chr11	70506522	70506722	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029360, intron 1 of 4)	intron (NM_029360, intron 1 of 4)	1348.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	4.73827694359997	4.61276673319403	3.99427052859853	4.47642767698436	4.40419764448036	4.48312688643725	4.24243132781486	4.51937610168461	-0.158440886865869	0.695775116907216	0.876851576599482
Merged-chr5-135689828-4	chr5	135689743	135689943	+	794.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	698.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	3.64129019764037	3.30724139378108	3.6905066184284	3.3261568098069	3.49837134354216	3.65607497682577	3.15938666373997	3.6882205969612	0.0674037848716893	0.900632537173094	0.963161804192488
Merged-chr7-34918645-4	chr7	34918538	34918738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 1 of 14)	intron (NM_008820, intron 1 of 14)	6231.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	7.34396746824741	7.59849226837682	7.39585639190927	7.86352200950135	7.32899561336516	7.2849500568874	7.49932189753052	7.0894585602324	-0.361249829841874	0.0800018076172144	0.306367281669215
Merged-chr18-53905838-3	chr18	53905726	53905926	+	774.600037	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 3 of 12)	MIR|SINE|MIR	43713.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	3.45812715412504	3.62513649134439	3.39742223891383	3.83556955125213	3.82917561212456	3.63173522877273	3.66279814459931	3.51515358595381	0.194536782043312	0.701529883209553	0.879767652498371
Merged-chr14-47367462-3	chr14	47367246	47367446	+	920.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6514.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	2.88506670243378	2.72889282241763	2.88547147793856	2.79847770182093	2.65412960196331	2.7448396117753	2.49220825969261	2.57002496589342	-1.03485827017213	0.122852017592963	0.388488327346818
Merged-chr5-144126182-4	chr5	144126087	144126287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081109, intron 1 of 13)	intron (NM_001081109, intron 1 of 13)	25751.0	NM_001081109	231876.0	Mm.288726	NM_001081109	ENSMUSG00000038970	Lmtk2	2900041G10Rik|A330101P12Rik|BREK|KPI-2|KPI2|aatyk2|cprk	lemur tyrosine kinase 2	protein-coding	6.3452572752719	6.30155962488173	6.34637880721737	6.1113755660609	6.2400810790892	6.65054808177961	5.90688971727709	6.08983915071811	-0.0338409309298411	0.894837481076112	0.96069135232764
Merged-chr9-40762478-4	chr9	40762340	40762540	+	964.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 2 of 6)	B1_Mus1|SINE|Alu	-38833.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	5.58735338734992	5.62912412976961	5.65640994303797	4.88106513306473	5.36262908174795	4.80949394567437	4.74048317341898	4.84512881721713	-0.901055030559238	0.0176775932644857	0.117734018570795
Merged-chr6-122638766-5	chr6	122638629	122638829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12305.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	5.53709316958138	5.60242690592743	5.4804685620394	5.30657640607642	5.66996961407954	5.74159925216845	5.89293625967193	5.95982447950496	0.577142388687033	0.0296227121042785	0.165841987169297
Merged-chr8-122835177-3	chr8	122835065	122835265	+	847.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13209.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	3.51297216635822	3.28321457491686	3.26757929512764	3.37619292269898	3.55417505184342	3.79126525649954	3.70401658067975	3.81011713096091	1.13005081483003	0.0215389814236521	0.134449106266257
Merged-chr11-100612346-4	chr11	100612250	100612450	+	756.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019795, intron 1 of 13)	MLTR14|LTR|ERV1	7818.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	3.80629953454225	3.6588338404022	3.70550629452068	3.82959508940595	3.651888330317	3.52576596622622	3.6906868057028	3.98542833503243	-0.0973392965851277	0.836399337717638	0.937736362710535
Merged-chr10-25426727-4	chr10	25426629	25426829	+	980.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	18361.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	4.64329425180892	5.31164453099721	5.41290493563459	5.10964993856554	4.98318531762816	5.03134594941127	4.83185121575949	4.96318414836013	-0.377640269950549	0.268487590044305	0.580131084080006
Merged-chr11-76479312-4	chr11	76479180	76479380	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	-10815.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	4.67868927793178	4.50178456318649	4.54279617265171	4.3687291697949	4.28995657672917	4.06681057689639	4.09208036322642	4.20471796678509	-0.843573932530108	0.0335964701531326	0.180480237662628
Merged-chr4-140988804-4	chr4	140988729	140988929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164366, intron 1 of 28)	intron (NM_001164366, intron 1 of 28)	1956.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	7.44928120848973	7.49393146484098	7.23715435149271	7.64468940655478	7.06931818188352	7.15792939201504	7.2759635151174	7.39781688546457	-0.333349750297561	0.084435214567085	0.316133508898561
Merged-chr11-6267833-4	chr11	6267748	6267948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026538)	promoter-TSS (NM_026538)	-119.0	NM_026538	52513.0	Mm.29810	NM_026538	ENSMUSG00000004393	Ddx56	2600001H07Rik|D11Ertd619e|Noh61	DEAD (Asp-Glu-Ala-Asp) box polypeptide 56	protein-coding	7.87472362000935	7.86532181055683	7.72536739356978	7.58343235171504	7.71318321791504	7.73111072904282	7.58799560513421	7.5759561218875	-0.137627727534703	0.428095918999124	0.719151653480075
Merged-chr17-27173866-4	chr17	27173757	27173957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6093.0	NM_173027	271424.0	Mm.209679	NM_173027	ENSMUSG00000024210	Ip6k3	D830007E07Rik|Ihpk3	inositol hexaphosphate kinase 3	protein-coding	5.66997912935694	5.8545691106721	5.53824122381985	5.75874052977921	5.8018444618617	5.62749402661227	5.48274026280436	5.44809189064935	-0.182998796688349	0.498786188615613	0.767833862179825
Merged-chr5-130248075-4	chr5	130247970	130248170	+	960.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023248, intron 4 of 4)	intron (NM_023248, intron 4 of 4)	7460.0	NM_023248	66711.0	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	SBDS ribosome maturation factor	protein-coding	5.51710983429861	5.58442708402731	5.6199715955218	5.86192899263202	5.07276344084748	4.92774114845496	5.3510560617908	5.40340953689951	-0.823986946837754	0.00581272051815665	0.0530712716472386
Merged-chr6-32588488-3	chr6	32588391	32588591	+	985.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175750)	promoter-TSS (NM_175750)	-299.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	4.29253998436122	4.6283362854785	3.90175317435782	4.40537713851994	4.13591735921424	4.1873166142786	3.82933910646798	4.15733284648299	-0.634876001914075	0.15093039163673	0.433957209173573
Merged-chr18-67988870-3	chr18	67988775	67988975	+	842.5166630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	55702.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	3.59057973200379	3.57306017240171	3.73282960340467	3.39259267325166	2.94420152935916	3.54850400656615	3.30144790744467	3.3117538634254	-1.01481781027665	0.0756901616942385	0.297169313398658
Merged-chr9-123525357-4	chr9	123525263	123525463	+	896.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4390.0	NM_001357485	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	4.07067780814268	3.86753560193245	4.02170031439165	3.98310151179208	4.46230002841895	4.09343465741349	4.23304006610754	4.29116530157926	0.765288030244478	0.0585674973908449	0.254581734154684
Merged-chr1-138159137-4	chr1	138159061	138159261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	15965.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	7.03678096764807	7.20949971183214	6.74469275843312	6.87187928202068	7.08489715931842	6.95094171536546	6.68071803239196	6.76947716981089	-0.123227766844715	0.568924735068814	0.809133106566958
Merged-chr8-27264356-4	chr8	27264284	27264484	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007918, intron 1 of 2)	intron (NM_007918, intron 1 of 2)	4057.0	NM_007918	13685.0	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	4.44242988850178	4.60280993168055	4.88706713027727	4.46832274238731	4.90019118625582	5.18611966128291	4.82895189077183	4.70078686717843	0.649490707296509	0.0656996027234311	0.272885103708415
Merged-chr3-133092471-4	chr3	133092378	133092578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026231)	promoter-TSS (NM_026231)	-439.0	NM_001356309	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	6.55260243106278	6.64856291857228	6.16341013311635	6.34749318243318	6.29856762415973	6.42033043991758	6.32339259047014	5.85548849715351	-0.294661111026383	0.236904794327631	0.54700150657517
Merged-chr2-103583475-4	chr2	103583366	103583566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	17156.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	6.61265441662053	6.72205451776989	6.53174802400151	6.9395811609842	6.57379441829428	6.82151098546776	6.70065435770601	6.67108012954598	-0.0554444931407989	0.796638777370892	0.921296411491563
Merged-chr5-96244723-4	chr5	96244626	96244826	+	875.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053158, intron 7 of 8)	L1ME1|LINE|L1	34611.0	NM_053158	94061.0	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	4.19863811594274	4.46590085071073	4.47795411913108	4.86176509707292	4.37155777742392	4.42712958768844	4.6130468539013	4.55595030362381	-0.120697170394379	0.761468979735505	0.906546472680028
Merged-chr15-81105062-4	chr15	81104960	81105160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153049)	promoter-TSS (NM_153049)	-13.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	7.52256502733541	7.67554733398337	7.37105896202714	7.49875704353696	7.37025136791726	7.50705478597148	7.56488062308648	7.05665635341755	-0.178948099741784	0.355993813214116	0.662672828881415
Merged-chr9-47642883-4	chr9	47642791	47642991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	112539.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	5.56888477051682	5.67092240022257	5.6958378125764	6.05462465252614	5.33299608018532	4.9836484840936	5.69037982713889	5.26918311043867	-0.737206183798112	0.017241388822764	0.115743168444357
Merged-chr3-116615867-4	chr3	116615773	116615973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289568, intron 9 of 17)	ORR1E|LTR|ERVL-MaLR	-1286.0	NM_030016	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	5.89045929371844	6.08243703278332	6.27159076989793	6.40967221020271	5.41967880061903	5.59889370516835	5.95098157143258	5.97734838824058	-0.699326700703264	0.0122820387077226	0.0913946272942777
Merged-chr17-84391096-3	chr17	84391006	84391206	+	617.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 25 of 37)	ORR1E|LTR|ERVL-MaLR	75102.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	3.31215926610166	3.14541321355384	3.19701518902944	3.57797819006737	3.12378788004217	3.11030901324297	3.18580375279597	3.46632341983796	-0.380490309017456	0.507092437333013	0.772710503440438
Merged-chr11-55147628-4	chr11	55147515	55147715	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172258, intron 3 of 10)	intron (NM_172258, intron 3 of 10)	4091.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	5.1470242688127	5.28297476308039	4.94563756924378	5.07789030524684	5.04597152716337	5.1558235968266	4.92211498889644	4.94234915631547	-0.190419493580743	0.538434714459573	0.791598565331363
Merged-chr13-67516199-1	chr13	67516099	67516299	+	738.200012	f0_c57.idr	3' UTR (NM_133228, exon 4 of 4)	3' UTR (NM_133228, exon 4 of 4)	10032.0	NM_133228	170763.0	Mm.491205	NM_133228	ENSMUSG00000097333	Zfp87	2210039O17Rik|4631412O18Rik|KRAB4|Mzf22|Zfp72	zinc finger protein 87	protein-coding	2.94622012115534	2.93782774430934	3.03255817460017	2.3441325009708	3.77919498576945	3.93844128740279	4.54554836825087	4.29400613893364	6.88956753709405	9.89548769356265e-15	1.53453359159062e-12
Merged-chr10-117747148-3	chr10	117747058	117747258	+	864.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029875)	promoter-TSS (NM_029875)	-800.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	3.29472100130037	3.28922759482084	3.41210564895869	3.13716122167897	3.61520629939629	3.58296541887944	3.28337400741218	3.56768819157238	0.852288067942287	0.0974481323059222	0.342024684881816
Merged-chr15-5355491-3	chr15	5355412	5355612	+	873.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111325.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	4.41025317403416	4.38776804004291	4.41096337200736	4.48479770736667	4.12024327351227	3.87999185945874	4.26768970992514	4.04660666953626	-0.843390897779421	0.0361278139944559	0.188945016334414
Merged-chr1-131052784-7	chr1	131052697	131052897	+	998.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008551)	TTS (NM_008551)	32952.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	3.20668598733689	3.21406002637403	3.27206132355212	2.97979896578601	3.14831136947168	3.62502627935579	3.54105265154852	3.98409019926744	1.51169873275908	0.00748325169081945	0.0639974014298736
Merged-chr17-48266750-3	chr17	48266661	48266861	+	780.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033922, intron 2 of 5)	RLTR22_Mur|LTR|ERVK	2466.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	3.71089564536616	3.4298604337609	3.3120403792261	3.10868830333237	3.36416951847548	3.36548415268147	3.24043994689654	3.1877360009182	-0.378805275257848	0.499394324016402	0.768354594150044
Merged-chr8-123015262-1	chr8	123015162	123015362	+	555.0	f0_balb.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	27022.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	3.14527523974127	3.25328486804523	3.08848599432273	3.17232319426298	3.09642455182138	3.25731722567241	2.67517229865832	2.67992248465106	-0.874931067995502	0.202483265789167	0.50494183017091
Merged-chr19-6995445-3	chr19	6995352	6995552	+	731.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027351)	promoter-TSS (NR_027351)	585.0	NM_026675	68323.0	Mm.49041	NM_026675	ENSMUSG00000037349	Nudt22	0610006K04Rik|AI851793|AW545547	nudix (nucleoside diphosphate linked moiety X)-type motif 22	protein-coding	3.45954204687147	3.46416860149103	3.23031945793007	3.51538957966747	3.30878432007354	3.57352218036186	3.2800023493307	3.28985188335547	-0.221570898383717	0.67290767866813	0.865470992373222
Merged-chr12-79359014-3	chr12	79358910	79359110	+	823.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	61659.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	3.80572173693807	4.07413446155072	3.80626381644285	3.76303817439635	3.83024019645931	3.81915648709108	3.73962189800195	3.58445150533287	-0.337444684197457	0.463485381374255	0.744788936919248
Merged-chr10-94569126-4	chr10	94568994	94569194	+	865.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	-6163.0	NM_001168684	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	3.92040944403197	4.15318372487689	3.60270028892116	3.75669527933114	3.79413725596741	3.72024943649619	3.75642190327667	3.91861968221757	-0.208620864983809	0.655428157769254	0.856076057726398
Merged-chr2-57175457-2	chr2	57175357	57175557	+	799.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040356, intron 1 of 2)	intron (NR_040356, intron 1 of 2)	6297.0	NR_040356	767815.0	Mm.188065	NR_040356	ENSMUSG00000084938	BB557941	-	expressed sequence BB557941	ncRNA	3.7421021974587	3.60096779636348	3.69098515531658	4.00096129751982	3.58046706970817	3.57601046887576	3.56774455901153	3.9279517226132	-0.333662200807959	0.496270525018841	0.766231528607104
Merged-chr10-22356595-3	chr10	22356487	22356687	+	641.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-5307.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	2.69298633672794	2.4721782987998	2.46600520264227	2.0417864148218	1.9892785805618	2.37238966023842	2.02571941617628	2.11177129753053	-2.04808638026754	0.027415086730867	0.157827439211937
Merged-chr3-22137971-3	chr3	22137878	22138078	+	774.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	61326.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.72936955933327	3.66786890504121	3.5178458093518	3.72769905651703	3.39606754090483	3.44619343080859	3.71407233384904	3.77554730801366	-0.248563426598857	0.613649578014208	0.833424856674871
Merged-chr19-32887434-3	chr19	32887351	32887551	+	843.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	129874.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	4.20388056388735	4.19655074810971	4.43190001810878	4.17492931165954	3.49869463005512	3.99826582567303	3.49610445745958	3.87237700102323	-1.49761880526727	0.00176924639502354	0.0212617236453453
Merged-chr2-163433998-3	chr2	163433914	163434114	+	838.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4453.0	NM_144891	228858.0	Mm.102080	NM_144891	ENSMUSG00000017943	Gdap1l1	Gdap1l	ganglioside-induced differentiation-associated protein 1-like 1	protein-coding	3.05365139269147	2.89399250607835	2.99732312751258	3.16440255228414	2.84878565485361	2.84665998415261	2.58756483286862	3.05237835525968	-0.845221306049064	0.194024468415373	0.494360954944796
Merged-chr4-72195333-4	chr4	72195236	72195436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285530, intron 4 of 17)	intron (NM_001285530, intron 4 of 17)	5557.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	6.59974121070185	6.59247936404713	6.8468970910627	7.04543823260961	6.0700836348605	5.99106722070043	6.33654456546706	5.8593402185793	-1.0655760979549	1.27519381779839e-05	0.000343424217771742
Merged-chr17-74341475-7	chr17	74341370	74341570	+	909.414307	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357738, intron 1 of 15)	intron (NM_001357738, intron 1 of 15)	2483.0	NM_016962	50850.0	Mm.19804	NM_016962	ENSMUSG00000024068	Spast	Spg4|mKIAA1083	spastin	protein-coding	3.01564280725088	2.80021124289827	3.14179725140731	2.96142913690355	2.97623268453053	3.57818584653264	3.12968817360142	3.30846440788578	1.08124138986651	0.0700843940396121	0.283375186455496
Merged-chr15-67414690-4	chr15	67414600	67414800	+	918.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187931.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	4.8001922279478	4.45160829330317	5.10936042137248	4.94653231322896	4.54106863293624	4.57068939778624	4.41957825931193	4.43640439486083	-0.769435279582343	0.0387322949841763	0.197588700747886
Merged-chr12-72086584-2	chr12	72086484	72086684	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205067, intron 1 of 6)	B1_Mus2|SINE|Alu	745.0	NM_024205	104771.0	Mm.258935	NM_024205	ENSMUSG00000005078	Jkamp	1200003C05Rik|2310047L11Rik|Jamp	JNK1/MAPK8-associated membrane protein	protein-coding	3.66439292294441	3.43157087995518	3.81510035998595	3.84765316305187	3.61448861125285	3.98248302791642	3.48246028237221	3.55221924608825	-0.11106043997045	0.82505040633191	0.932930565831813
Merged-chr13-45457544-3	chr13	45457403	45457603	+	959.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49941.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	3.83288021571493	4.46057045072039	4.37023367111017	4.3678195465506	3.55719881209598	3.52787481376438	3.53843339344327	3.6670430374642	-2.26105337132381	9.89766003171571e-06	0.000272430604562062
Merged-chr11-107581439-2	chr11	107581347	107581547	+	598.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_198298, intron 4 of 31)	intron (NM_198298, intron 4 of 31)	33487.0	NM_198298	78455.0	Mm.272047	NM_198298	ENSMUSG00000020721	Helz	3110078M01Rik|9430093I07Rik|9630002H22Rik|AI851979|DRHC	helicase with zinc finger domain	protein-coding	2.27448077238959	2.22065171764517	2.19105258266744	1.93606858531383	2.95291390747371	2.67942414365729	2.79491113569305	2.69183206917304	5.37800952812873	5.76703732953324e-08	2.60299270817277e-06
Merged-chr10-77536922-4	chr10	77536809	77537009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 1 of 15)	MTD|LTR|ERVL-MaLR	6561.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	7.39334654438858	7.39753891497937	7.67670723120077	7.60969232212876	7.49137876252584	7.61216332607382	7.63917137782284	7.78799444723085	0.137682899227997	0.444795824336476	0.731081677662176
Merged-chr9-22314195-4	chr9	22314098	22314298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6560.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	5.89274000237859	5.23307404010777	5.77987334046768	5.97580383123291	5.95373987027042	5.83020943230779	5.7021676661841	5.48217948870538	0.000883411223176444	0.997649149079665	0.999032258328017
Merged-chr7-137410655-4	chr7	137410530	137410730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029886, intron 1 of 3)	CpG	126.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	8.01585369246186	8.51457419661945	9.02330376895849	8.41516529689803	8.01826180597091	8.17382960807646	8.07989164277686	8.27680923426739	-0.511080738251578	0.020386255751316	0.129672314651291
Merged-chr5-115137723-3	chr5	115137641	115137841	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-2766.0	NM_175352	106840.0	Mm.29241	NM_175352	ENSMUSG00000046562	Unc119b	AA407659|AI414892	unc-119 lipid binding chaperone B	protein-coding	3.61478262414422	4.16946410543876	3.61526816431692	3.95088480144982	3.58977552520598	3.34711723073197	3.48721894570782	3.66736790841944	-1.03755596836563	0.0452881477973425	0.217852610128204
Merged-chr12-75658686-4	chr12	75658604	75658804	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028203, intron 1 of 1)	MTC|LTR|ERVL-MaLR	10833.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	4.08180348571423	4.14719164653194	3.93452211331729	4.46909339488017	4.08975925635267	4.0022300288592	3.81128623941659	4.03259996944089	-0.525510610688174	0.236111930323389	0.546101444075659
Merged-chr11-106736454-4	chr11	106736341	106736541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-14785.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	5.86135140603024	5.60513357540462	5.75044812602952	5.56459163794062	5.5167963746843	5.41750338309789	5.67379380800798	5.45855846536138	-0.284112102088966	0.291764189318102	0.604162542371363
Merged-chr9-86573076-4	chr9	86572933	86573133	+	992.1785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001145969, exon 2 of 3)	exon (NM_001145969, exon 2 of 3)	980.0	NM_027100	69519.0	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	4.51305627870274	3.99212190873008	4.59055731452635	4.3824743047375	4.5371654335935	4.76008266517667	4.27999532430344	4.29619306561929	0.226562361987925	0.577568760511612	0.814168830880721
Merged-chr10-121459270-4	chr10	121459184	121459384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	16966.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	5.90031043236064	5.74184857514114	5.78574947462261	6.01887620409172	5.66651674278778	5.60346954001689	5.7321260247271	5.98245617475786	-0.203880935283235	0.432127316564186	0.722198138555674
Merged-chr6-34906937-4	chr6	34906818	34907018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013366, intron 3 of 14)	intron (NM_001013366, intron 3 of 14)	3913.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	5.90695609391266	5.64645450911563	6.24028379825094	5.84401873303999	5.8290196545746	4.99416747360715	5.36559050474349	5.45059582467099	-0.768488895708731	0.0167726975630966	0.113515272394122
Merged-chr11-69417698-4	chr11	69417625	69417825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4050.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	6.43891743450059	6.79262006800178	6.00460732781425	6.28043664596672	6.60922108306199	6.92499548915317	6.74235230666693	6.38166815814285	0.386256837948879	0.133808645132411	0.407275681558906
Merged-chr11-21031992-4	chr11	21031891	21032091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59333.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	6.17071495690035	7.15955348161225	5.8487918569082	5.57473385452196	6.77352559372316	6.17682723269877	6.34539896580568	5.84460087772966	-0.0357664543863971	0.951073238060289	0.982556219406068
Merged-chr7-131802226-3	chr7	131802118	131802318	+	714.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164242.0	NM_173410	233919.0	Mm.208740	NM_173410	ENSMUSG00000040125	Gpr26	9630036A11Rik|A730021D22	G protein-coupled receptor 26	protein-coding	3.31624321806462	3.3461093793888	3.37281508498518	3.59720045551992	3.2139479491533	3.24141996885304	3.35983838865262	3.31495952510711	-0.517020770122394	0.33073370509706	0.642064486434028
Merged-chr2-144730553-3	chr2	144730452	144730652	+	855.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	-93114.0	NM_025490	66328.0	Mm.45377	NM_025490	ENSMUSG00000027431	Scp2d1	1700010M22Rik	SCP2 sterol-binding domain containing 1	protein-coding	3.31445893579027	3.04557226125407	3.04311071554302	3.12349969290795	3.0786735657109	3.0230427278077	2.90705595609474	2.97966119178957	-0.548069835259077	0.346451165165845	0.654719806798213
Merged-chr9-40733545-4	chr9	40733480	40733680	+	984.708374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	47616.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	3.86115453360296	3.76234371994028	3.98351353245522	4.00540930722417	2.85744654668089	3.10159039930738	3.05620463675313	3.13858429195494	-3.95057611446521	1.86032312500075e-07	7.55798742662262e-06
Merged-chr13-51845192-3	chr13	51845104	51845304	+	882.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1471.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	3.60442889834534	3.73839340872888	3.65943863646138	3.35043196261651	3.74410696313576	3.93126125480929	3.59081728641171	3.70959866873005	0.508638676828099	0.291959953634468	0.604435540090105
Merged-chr1-37719979-3	chr1	37719924	37720124	+	884.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028096)	promoter-TSS (NM_028096)	-213.0	NM_028096	72097.0	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	3.6148511825832	3.33030478844581	3.91444634599448	3.26633817420239	3.16620169717405	3.27098812880584	3.14688419902679	3.40418654158662	-1.06326994880197	0.0646328622703986	0.270284045686021
Merged-chr2-11331718-4	chr2	11331619	11331819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7770.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	5.13673230946907	4.84446558087853	5.19998389209885	5.19542332243958	5.34962000511724	4.77156134300335	5.04735660041503	5.31242695614142	0.0869342123878934	0.791305387384433	0.919050824109746
Merged-chr2-71389146-4	chr2	71389050	71389250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026115)	promoter-TSS (NM_026115)	-110.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	8.43942861741476	8.50688736758833	8.45610799284888	8.49956524961825	8.59413320274202	8.48273254195167	8.63907479648322	8.36673055927954	0.0631242308808053	0.674058774808675	0.865983965214928
Merged-chr10-79840855-3	chr10	79840760	79840960	+	929.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	ZP3AR|Satellite|Satellite	-13572.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	3.67268620304794	3.44003669543667	3.67322678275491	3.64638943785457	3.44107263108878	3.5161886589374	3.32932195523408	3.62131423628578	-0.437188602542172	0.37910186250321	0.681657441295307
Merged-chr1-80758597-4	chr1	80758533	80758733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175291)	promoter-TSS (NM_175291)	-80.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	5.83567423243172	6.1055076924701	6.20321849696478	6.06938501650295	6.13293488137815	5.93727575475641	6.17145876304432	5.99639558450399	0.00943473133646202	0.968479212129611	0.988694268692349
Merged-chr3-116189554-4	chr3	116189434	116189634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59846.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	6.97507383226792	7.14270817006277	7.11028264719595	7.25781236044681	6.97869731366345	6.91408731641621	6.8060168479594	7.18359981284301	-0.214707211932301	0.276340224595622	0.588399917631151
Merged-chr17-33746294-4	chr17	33746189	33746389	+	953.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008997, exon 5 of 5)	3' UTR (NM_008997, exon 5 of 5)	14197.0	NM_008997	19326.0	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	4.39177712862905	4.61781762398409	4.96216013278974	4.76776567967519	4.78577313462666	4.6602512146189	4.55003962953819	4.52564956412204	-0.136608354982389	0.707187649621644	0.882407042026803
Merged-chr2-21202063-4	chr2	21201957	21202157	+	889.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027728, intron 1 of 4)	intron (NM_027728, intron 1 of 4)	3308.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	4.36590291632339	3.84554398898214	3.88714596515148	4.18420993197684	3.99651809358318	4.17635462693861	4.17661687281238	4.76949936931547	0.544473630531072	0.23777271983516	0.547975404670062
Merged-chr5-108629772-4	chr5	108629655	108629855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282052)	promoter-TSS (NM_001282052)	22.0	NM_001359924	231580.0	Mm.276647	NM_153569	ENSMUSG00000062234	Gak	D130045N16Rik	cyclin G associated kinase	protein-coding	7.60240608328573	7.46006444146653	7.52285638033305	7.5759503750509	7.70759753991383	7.78065655140532	7.67438754772889	7.64124335694933	0.209466443327659	0.203753844985547	0.506768445158274
Merged-chr18-36194036-4	chr18	36193934	36194134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167891, intron 1 of 9)	intron (NM_001167891, intron 1 of 9)	3126.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	6.35072025891181	5.94689754858636	6.41948935233134	6.39880301410828	6.28875111596654	5.88950884485258	6.13324457357581	6.29408428469744	-0.192372855062576	0.438435967847166	0.726385226396654
Merged-chr12-55486429-3	chr12	55486326	55486526	+	946.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	6221.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	3.9798076811624	3.95454522998611	3.69109308784821	3.21622455781794	3.74820539380313	3.96665363811256	3.62146625999469	3.51634259657675	-0.0520865861437324	0.923106111923727	0.97151895464601
Merged-chr13-51637295-2	chr13	51637195	51637395	+	686.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-7937.0	NM_025415	66197.0	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	3.33515743804874	3.68447503598271	4.1973825831928	2.83276972859083	3.20272008293423	3.32005139107059	3.44404327589726	3.6720119501172	-0.607454313563625	0.356386251059108	0.662848627231153
Merged-chr15-91651686-1	chr15	91651586	91651786	+	610.0	f0_balb.idr	Intergenic	Intergenic	-21538.0	NM_025730	66725.0	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	3.47804566973444	3.34575369704809	3.31613094040853	3.51036791349039	3.27717847991061	2.94224129672575	3.46406826615826	3.42475011536746	-0.445038041367393	0.430096075475265	0.720740306563559
Merged-chr11-70683720-4	chr11	70683615	70683815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178116, intron 5 of 22)	intron (NM_178116, intron 5 of 22)	4390.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	6.29234074749495	6.8002901072989	6.31207128643362	5.68614043793228	6.70498145343241	6.50676352858596	6.36825660263344	5.76314854460577	0.0852218436167634	0.793253191634009	0.919921941531447
Merged-chr7-35127918-4	chr7	35127817	35128017	+	851.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	8624.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	3.98417016760053	3.91919522603581	3.87951601791422	4.22244296563328	3.88473635320452	4.10786332861823	4.35289273875059	4.21281118767443	0.315346714587777	0.472048359719862	0.750299901668082
Merged-chr12-24708615-4	chr12	24708488	24708688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009104, exon 2 of 10)	exon (NM_009104, exon 2 of 10)	334.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	5.58082317492802	5.55525418072343	5.76088780557329	5.72245825432196	5.79588021767604	5.22947327718309	5.8873245460655	5.95474204979466	0.150691383545646	0.596129927272341	0.824433280743724
Merged-chr4-11004496-2	chr4	11004396	11004596	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175175, intron 1 of 1)	intron (NM_175175, intron 1 of 1)	3123.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	2.21016669102606	2.08448672434565	2.13276502908973	2.03025179153861	2.23947646224087	2.52840125836206	2.64298160135464	2.48168107075701	2.32993916878607	0.00255412315231663	0.0281860359470923
Merged-chr3-136784000-2	chr3	136783900	136784100	+	967.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	113934.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	3.4771398030266	3.41522161197558	3.5929504506446	4.05092543805031	3.50952238494753	3.81732113908528	3.73286861060977	3.59100376287545	-0.0433069253826222	0.934918357057139	0.97635719558922
Merged-chr9-78532666-4	chr9	78532550	78532750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50926.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	6.55767140421661	6.24795547783425	6.05341101323991	6.51311836673645	6.38287827417672	6.34096507760654	6.2520330804934	6.7398109713396	0.110027962541595	0.654325836901363	0.855606647526205
Merged-chr2-165914493-4	chr2	165914412	165914612	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29674.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	5.20291358373993	5.13945121187105	4.87394136369427	4.97320067828508	5.10822625961973	4.89170219252042	4.95822087388293	4.8325710423683	-0.172366721541373	0.589308545582604	0.8204512961316
Merged-chr18-65692344-4	chr18	65692245	65692445	+	951.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5923.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	4.61063432247753	4.65613809638858	4.73041049365105	5.0030850856408	4.69648047134526	4.74432447253561	4.46057059168868	4.93605427200797	-0.121224022246041	0.736136998840881	0.895884000208244
Merged-chr1-36309787-4	chr1	36309722	36309922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290727, intron 1 of 5)	intron (NM_001290727, intron 1 of 5)	2089.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	6.10858127142555	5.44841681471513	6.01273184677748	6.27395719053649	6.0675211092654	4.88959668912734	5.89882200950323	5.39931761221057	-0.56255281256139	0.130326284670272	0.401881955810095
Merged-chr10-19939419-4	chr10	19939318	19939518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	4892.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	6.95091349766781	7.00562663571899	6.71736973430988	7.02557576151735	6.28010056359801	6.41276214843402	6.20164875881419	6.16449928360305	-0.972936363490321	5.08251228516792e-06	0.000150049001221886
Merged-chr4-128806178-4	chr4	128806096	128806296	+	869.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081098)	promoter-TSS (NM_001081098)	-84.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	3.96707404198715	4.00264620983952	4.10221177298291	3.59674781066297	4.15812995587878	3.82644872544981	3.99626678663172	3.51938153744504	-0.0490364424213261	0.920752947704062	0.970622554300086
Merged-chr1-84883138-4	chr1	84883031	84883231	+	993.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025386, intron 2 of 3)	intron (NM_025386, intron 2 of 3)	43290.0	NM_025386	66153.0	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	4.76449901403906	4.95885040170948	5.0342974681893	5.34625250714107	5.19917845629053	4.66834285422553	5.44228043720898	5.39050827730098	0.281601902325181	0.432970480492487	0.722758110482522
Merged-chr1-69689182-4	chr1	69689093	69689293	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3233.0	NM_011770	22779.0	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	5.41824324788806	5.40665668263358	5.30113040751104	5.61819908601222	5.37460102928109	5.24225038650746	5.39215205968871	5.2974828961605	-0.223089198423045	0.43167781396293	0.721802135828124
Merged-chr2-83676671-2	chr2	83676566	83676766	+	783.666626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	32088.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	3.33226806297162	3.32238134476013	3.4780875691985	3.76948431693415	2.59201688253118	2.71051848314048	2.67858659669808	2.68382051597066	-5.64980032165316	3.11633772310751e-07	1.20487671261852e-05
Merged-chr8-71542824-4	chr8	71542725	71542925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028617)	promoter-TSS (NM_028617)	-105.0	NM_028617	73711.0	Mm.307770	NM_028617	ENSMUSG00000031813	Mvb12a	1110012M11Rik|Fam125a	multivesicular body subunit 12A	protein-coding	8.20597042915822	8.39408360777793	8.11535864014512	7.92631629856485	8.29910913167156	8.38500079343183	8.06407386891518	8.09074990691756	0.0656898500782854	0.715830897624711	0.886371813543908
Merged-chr1-106818583-4	chr1	106818492	106818692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21867.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	5.43325676606847	5.51130537814312	5.64704436423885	4.87171654191062	5.60401401246431	5.69253846408068	5.49040624562628	5.56742283817783	0.371131644304218	0.238150851762495	0.548516032798429
Merged-chr7-28053659-3	chr7	28053572	28053772	+	930.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3580.0	NM_011874	23996.0	Mm.29582	NM_011874	ENSMUSG00000030603	Psmc4	CIP21|MIP224	proteasome (prosome, macropain) 26S subunit, ATPase, 4	protein-coding	3.50390123516168	3.27308820980989	4.30303235235097	4.06280592830221	3.65323708904076	3.74162019045416	3.49154232748292	3.50255449654325	-0.743008005518619	0.196986564843561	0.498305021643324
Merged-chr12-41349601-4	chr12	41349518	41349718	+	948.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	L1MA9|LINE|L1	136439.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	4.54423715067767	4.94082465433357	4.73844678282099	4.57847086483083	4.65648103486253	4.4959354535725	4.67972880564721	4.26405173547407	-0.361118480774114	0.331470335705304	0.642595786244724
Merged-chr1-88008399-4	chr1	88008308	88008508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033291, intron 1 of 27)	CpG	143.0	NM_001198573	227334.0	Mm.80484	NM_001033291	ENSMUSG00000005501	Usp40	B230215L03Rik|C730029K03	ubiquitin specific peptidase 40	protein-coding	4.92445429599874	5.23556334859754	5.69491122681544	5.12233833400769	4.94125141555609	5.02587041772877	4.97467519748322	4.88363800529976	-0.59439708541906	0.0775690914856059	0.301202387706416
Merged-chr6-116416386-3	chr6	116416283	116416483	+	970.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009662, intron 7 of 13)	ORR1E|LTR|ERVL-MaLR	44795.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	3.37345581802629	3.92447500680594	3.75750688092705	4.12399782401342	3.58994588235925	3.9872048805359	3.99232934143625	4.36448250480822	0.48743111230482	0.366426035029907	0.670870844517492
Merged-chr15-36606724-4	chr15	36606594	36606794	+	941.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008774, intron 1 of 14)	intron (NM_008774, intron 1 of 14)	2279.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	4.83217572672441	5.3096876894314	4.2790265283047	4.06643420515708	5.4182078036304	5.36507797692347	4.95106491155179	4.58120860161049	0.782404789903392	0.0926114616012453	0.332861866093081
Merged-chr1-170937265-4	chr1	170937163	170937363	+	882.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-9680.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	4.34333810076141	3.95132246281338	4.30171140042052	5.01201073424697	3.57700410357436	4.19385377239944	3.94315472010824	4.29891793875584	-1.09278412328554	0.0336739734155661	0.180814706830611
Merged-chr9-40521330-4	chr9	40521228	40521428	+	967.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	10055.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	4.71080519743467	4.64758891033377	5.41232868361448	5.40865487269698	4.95948856948132	4.35830591284402	4.64858860303489	4.58057560573273	-0.881768454112197	0.0318318919809295	0.174156226492345
Merged-chr4-116075255-7	chr4	116075087	116075287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025641)	promoter-TSS (NM_025641)	-82.0	NM_153521	230654.0	Mm.3655	NM_153521	ENSMUSG00000028703	Lrrc41	AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1	leucine rich repeat containing 41	protein-coding	6.60216543795965	6.77060410735523	6.38031946901289	6.59460546831385	6.72848124931132	6.71516829952844	6.42026192070037	6.70405143540511	0.0765429953079422	0.722221267832818	0.889145957666795
Merged-chr2-34778644-4	chr2	34778529	34778729	+	980.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145522)	TTS (NM_145522)	6539.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	4.65253885480578	5.24520452615241	4.86097061832089	4.30742059910757	5.35788050739388	5.58406473455471	4.91156396927062	4.8955250270806	0.798728836223044	0.0435613705315965	0.212440789529751
Merged-chr2-79757233-3	chr2	79757120	79757320	+	660.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290743, intron 3 of 4)	ORR1A4|LTR|ERVL-MaLR	49440.0	NM_001290743	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	3.5898186052267	3.6202548490025	3.70711190344284	3.51070868074365	4.0482751826443	3.88323452604846	4.29676851078759	3.86273140853067	1.25624980817526	0.00525112403110841	0.0492839870002987
Merged-chr15-73148364-4	chr15	73148276	73148476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	36571.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	5.31733833661232	5.45471526670007	5.7725725531742	5.5478204067063	5.83806400841311	5.92302740557555	5.78974113973301	6.06457543740992	0.612505514624661	0.0201532707296262	0.128746154843301
Merged-chr5-30709952-4	chr5	30709852	30710052	+	863.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1612.0	NM_001356949	65254.0	Mm.27732	NM_023047	ENSMUSG00000029168	Dpysl5	CRAM|CRMP-5|Crmp5	dihydropyrimidinase-like 5	protein-coding	4.05919818562743	4.06306646951217	3.79197362858552	4.10744483741266	4.26422090884714	4.1335416425645	4.17866544018245	4.27878265579652	0.503915030709429	0.218835155170563	0.526160907643747
Merged-chr2-4890604-3	chr2	4890505	4890705	+	882.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175400, intron 3 of 8)	intron (NM_175400, intron 3 of 8)	9041.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	3.54315790354331	3.78794871662476	3.90692400921447	4.16496872514323	3.93184397302819	3.53265824438235	3.64411519259019	3.4166196908598	-0.665562277575813	0.206329293131499	0.510258987941256
Merged-chr6-136451085-4	chr6	136450988	136451188	+	975.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35519.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	4.44666745270546	4.13749326013117	4.53388219101753	4.89024979754707	4.71878695958938	4.48449418063548	4.70500402335303	4.82773498911856	0.301162918188651	0.451712656742582	0.736234475719597
Merged-chr15-34067252-4	chr15	34067171	34067371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-15448.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	5.26793605692467	5.46151471229946	5.17638777146794	4.94586529516655	4.99670600439992	5.25195706623758	5.1509513303031	5.23514063784515	-0.107966360101206	0.732024872365004	0.893881045577835
Merged-chr9-14725199-4	chr9	14725061	14725261	+	969.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177905, intron 8 of 18)	intron (NM_177905, intron 8 of 18)	15572.0	NM_177905	330890.0	Mm.334969	NM_177905	ENSMUSG00000036912	Piwil4	9230101H05Rik|Miwi2	piwi-like RNA-mediated gene silencing 4	protein-coding	4.67054457742225	4.74340119051005	4.62908082840467	4.98256459189453	4.84072404336172	4.80570976395761	4.84052017778054	5.2020479206565	0.299235785121615	0.386596347424515	0.687735513668192
Merged-chr2-167833744-4	chr2	167833642	167833842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98585.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	7.11717137560146	7.22612094990053	7.05877832208941	7.07298163865819	7.11600339891827	7.06651913073839	6.85418812475925	7.41225287999723	0.012006419528745	0.952456949302287	0.983110341498473
Merged-chr13-100015679-4	chr13	100015557	100015757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030026)	promoter-TSS (NM_030026)	-18.0	NM_030026	78038.0	Mm.137327	NM_030026	ENSMUSG00000021646	Mccc2	4930552N12Rik|MCCB	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	protein-coding	7.94966502425115	7.78303353551897	7.70040892137758	8.16717720796916	7.71815856184731	7.88588672583913	8.18237487020658	7.60002282264582	-0.0738680742029934	0.71738641596902	0.886969736012834
Merged-chr7-80270075-2	chr7	80269975	80270175	+	981.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178070, exon 1 of 23)	exon (NM_178070, exon 1 of 23)	420.0	NM_178070	233405.0	Mm.322870	NM_178070	ENSMUSG00000030534	Vps33b	-	vacuolar protein sorting 33B	protein-coding	3.36640195482134	3.43864681250005	3.625783407279	3.28667490145841	3.47009326616799	3.35773958859175	3.51439529149405	3.24518073973073	-0.0800561668919158	0.877835714694643	0.954314763971155
Merged-chr6-134432906-3	chr6	134432790	134432990	+	693.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355686, intron 5 of 5)	intron (NM_001355686, intron 5 of 5)	18462.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	3.02779585257245	2.75641378427182	3.27584532148802	2.74638992834096	2.72909438572428	2.82916999689602	2.64248404708107	2.57419801226332	-1.25719573725382	0.069273292839214	0.281518910134309
Merged-chr14-21745292-4	chr14	21745179	21745379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007268, intron 3 of 7)	MER91C|DNA|hAT-Tip100	-2400.0	NM_013849	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	6.85107755439646	6.8665051979146	7.54951172743253	7.34640235663186	6.94598657991595	6.2776136269734	6.80346355414186	6.9018983965873	-0.593070657327473	0.0215671797189143	0.134589714642522
Merged-chr3-123385993-4	chr3	123385952	123386152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201638)	promoter-TSS (NM_201638)	-62.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	7.8138447151202	8.09974453861856	7.31370603808363	7.90246056321286	7.46646308788389	7.26376454202975	7.66166736086063	7.54832508510892	-0.427231546016423	0.0467810521973397	0.222388867585283
Merged-chr19-6241530-4	chr19	6241390	6241590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194348)	promoter-TSS (NM_194348)	-178.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	8.52939246728696	8.69982364432516	8.4174676102675	8.31822691199368	8.44150590634042	8.45339574323093	8.03719982094841	8.21711774248318	-0.247364849162841	0.164774710394557	0.455033913139639
Merged-chr5-148509402-4	chr5	148509322	148509522	+	943.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 4 of 6)	intron (NM_001359199, intron 4 of 6)	42251.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	5.17346794259582	4.93544645755381	5.28597776654155	5.19359915385437	4.62940200402314	4.57999668332293	5.02688452489169	4.6776791510208	-0.831243970359904	0.0137018787267966	0.098497753542661
Merged-chr12-24572170-4	chr12	24572055	24572255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161406)	promoter-TSS (NM_001161406)	-132.0	NM_001161406	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	8.83645582603744	8.86037848586826	8.92677519399887	9.16437886940327	9.00457835777167	8.88013515062014	9.28257964012778	8.82826674433975	0.0665379783386287	0.696675564836695	0.87731920902324
Merged-chr7-145243268-4	chr7	145243198	145243398	+	856.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132644, intron 24 of 24)	intron (NR_132644, intron 24 of 24)	-35179.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	4.16531413119351	3.94938158585094	3.43813902761408	3.83069580555802	4.07967481444075	3.92089434936026	3.83639265905675	3.74446150006008	0.102394103024876	0.832873571273337	0.936153248426439
Merged-chr7-88482242-3	chr7	88482130	88482330	+	948.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028238, intron 2 of 2)	intron (NM_028238, intron 2 of 2)	51957.0	NM_028238	72433.0	Mm.276669	NM_028238	ENSMUSG00000030559	Rab38	2310011F14Rik|AU043391|cht	RAB38, member RAS oncogene family	protein-coding	4.23732639102683	3.57339528948064	4.27734332428609	4.41642574287702	3.64169187846087	3.93733815315779	3.80014214790889	3.91957309599123	-0.942317320045776	0.0563213038329754	0.248531438879976
Merged-chr5-129020085-4	chr5	129019980	129020180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009391)	promoter-TSS (NM_009391)	-76.0	NM_009391	19384.0	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	7.62301930206515	7.5544963263558	7.73191382949498	7.49133877361775	7.80010813320454	7.75778242580789	8.07311791130486	7.31771170529269	0.220243133358592	0.279710400079389	0.591787491224053
Merged-chr7-34389727-4	chr7	34389644	34389844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360654)	promoter-TSS (NM_001360654)	-39.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	8.05545676001815	8.31978340099494	7.85098233471652	7.92433882683746	8.14660679820645	8.11069053416315	8.24455218424982	7.89852957378141	0.0745478212571568	0.681821967800476	0.869647747559641
Merged-chr14-54686811-4	chr14	54686691	54686891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023190, exon 1 of 19)	5' UTR (NM_023190, exon 1 of 19)	140.0	NM_001085473	56215.0	Mm.297078	NM_019567	ENSMUSG00000022185	Acin1	2610036I19Rik|2610510L13Rik|Acinus|Acn|C79325|acinusL|acinusS|mKIAA0670	apoptotic chromatin condensation inducer 1	protein-coding	8.30815522423464	8.32810102155402	7.63379170530041	7.4050125439865	8.53053765859882	8.95838911001492	8.05153159183884	8.05853504381475	0.602552695347133	0.135576284718713	0.409896120715002
Merged-chr17-73942403-4	chr17	73942316	73942516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 2 of 35)	intron (NM_011723, intron 2 of 35)	7780.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	5.99962522077845	5.63542121517496	5.72441467548878	5.96098058454824	5.73866075605925	5.70889932293109	5.64326673813447	6.2893532914029	0.0422739213903922	0.881146698797863	0.955322489265647
Merged-chr6-71196287-4	chr6	71196175	71196375	+	767.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3604.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	3.94311639614597	3.74488065577393	3.89382019025326	3.81911372055083	4.11815824274532	3.59692487946271	4.2639840404893	4.08004966554825	0.528846829245224	0.244745724121822	0.555863302401633
Merged-chr2-145885375-3	chr2	145885279	145885479	+	671.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 12 of 12)	intron (NM_028724, intron 12 of 12)	-17862.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	2.91566801911506	3.1575853071324	3.16888325877539	3.43020306091008	3.10968269582945	3.15668145938192	3.15719270865847	3.10858221636622	-0.24330423414739	0.67785847313896	0.86790222257403
Merged-chr3-30647848-4	chr3	30647749	30647949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027941)	promoter-TSS (NM_027941)	-31.0	NM_027941	71827.0	Mm.45373	NM_027941	ENSMUSG00000027702	Lrrc34	1700007J06Rik|SPATA34	leucine rich repeat containing 34	protein-coding	5.60456452082537	5.27138757425413	5.26520726319179	5.34483949746377	5.49147366970661	5.50394673435623	5.55222216006417	5.49808541415608	0.240004159773661	0.383382126702418	0.685301023974684
Merged-chr5-149284934-4	chr5	149284816	149285016	+	909.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009663, intron 3 of 4)	MTD|LTR|ERVL-MaLR	19912.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	4.68047913194495	4.50171801300599	4.57446263855585	4.28373882710643	4.24561596319112	4.15181415670548	4.16870068318535	4.53373306471423	-0.524249016730595	0.186928780601969	0.485120635668048
Merged-chr7-88242319-3	chr7	88242225	88242425	+	683.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35760.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	3.32322825677614	3.25257179123686	3.43002089580079	3.36517310623038	3.35009261594809	3.43674571828888	2.93261864491752	3.14413833620425	-0.408241465036704	0.471265434371873	0.749763001969747
Merged-chr3-55103787-4	chr3	55103730	55103930	+	803.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-8278.0	NM_001144988	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	3.82922472250628	3.54553963546706	3.45190876430943	3.68097718945831	3.571055578228	3.62739541815436	3.90208831266167	3.9592290690009	0.414378280056624	0.39322895792359	0.692367387227111
Merged-chr10-80329364-3	chr10	80329301	80329501	+	901.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008793)	promoter-TSS (NM_008793)	72.0	NM_008793	18551.0	Mm.299916	NM_008793	ENSMUSG00000020131	Pcsk4	AI647044|L21221|NEC 3|NEC3|PC4|SPC5	proprotein convertase subtilisin/kexin type 4	protein-coding	4.01902843255201	3.58344273928802	3.87845973048338	3.41102403097752	3.7699044581887	3.78335838881948	4.08640007544667	4.14395334113143	0.638940433627271	0.191596979247188	0.490975870844874
Merged-chr9-72110707-2	chr9	72110607	72110807	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253865, intron 2 of 14)	intron (NM_001253865, intron 2 of 14)	494.0	NM_001253862	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	2.89839871119824	2.73684171817069	3.00913459173733	2.35752962889355	2.69568694458485	2.60480050281332	2.63702259912201	2.89713002860982	-0.271615689696691	0.705137728617253	0.881587544161158
Merged-chr4-154904672-4	chr4	154904576	154904776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16|LTR|ERVK	-5633.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	6.91027677167324	6.59830327974965	6.43780576237868	6.79311820242325	6.38639332988906	6.70129678462806	6.77418077485656	6.37812676278547	-0.195804268155977	0.39458440356548	0.693682147756976
Merged-chr17-80100067-4	chr17	80099965	80100165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27406.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	6.00152524564044	5.98439574332822	6.08383088190843	6.20876668856649	5.72281550605072	5.94922585507163	5.46558625936703	5.74353562986561	-0.567713090916945	0.0259892918983817	0.152430109429376
Merged-chr3-98055976-4	chr3	98055850	98056050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	42412.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	6.12353353555827	5.87003972292593	6.42100451968692	6.45905165108783	6.0679903654049	5.68378783014785	5.80892484840854	5.56081704015268	-0.692296389178597	0.0131509894219894	0.0957435846393692
Merged-chr11-100323780-4	chr11	100323670	100323870	+	948.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3821.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	4.9111593112784	4.57104227389391	4.06744029665937	4.35401776413895	4.43996851006681	4.4999932290074	4.43688201522137	4.41163975433251	-0.133456841151887	0.742507974527467	0.898494026733066
Merged-chr19-42752746-4	chr19	42752676	42752876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029011)	promoter-TSS (NM_029011)	-1.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	6.52156394212057	6.05726507048473	6.68031985711091	6.41825478281326	5.91733169348546	6.10660368726423	6.21859029648343	5.97176959882662	-0.578593988763131	0.0205018419196561	0.13017846619083
Merged-chr3-51415377-4	chr3	51415304	51415504	+	902.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053089)	promoter-TSS (NM_053089)	-612.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	4.08753159151531	3.92498990979671	4.0881441040929	4.10015178285923	4.09502751333003	4.11403559591727	3.81514853319986	4.41343937699071	0.187180492016687	0.661925915903163	0.859641380237762
Merged-chr17-65884975-4	chr17	65884873	65885073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198949)	promoter-TSS (NM_001198949)	-50.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	9.3301396460718	9.44216002219641	9.68738015883283	9.53519814208425	9.40370089015873	9.38471949660412	9.72804239884899	9.2551094161564	-0.0619822306867475	0.707343204957345	0.882444677286559
Merged-chr8-119423964-4	chr8	119423861	119424061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13201.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	6.3639514918475	6.28625419121956	6.0335330316878	6.5777787772028	6.21700883525647	6.02012559664673	5.95764490932054	6.17634617837309	-0.370758601535981	0.132674335727933	0.40568891411541
Merged-chr16-36776221-2	chr16	36776124	36776324	+	586.75	f0_balb.idr|f1_balb.idr	intron (NM_001145899, intron 3 of 6)	intron (NM_001145899, intron 3 of 6)	8738.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	3.214257847233	3.80721827604792	3.6315053937401	3.53863050236854	3.5644610641521	3.69629684483743	3.39739202472723	3.57745934219285	-0.0130557571043349	0.979910581415838	0.992772119265666
Merged-chr13-34089258-4	chr13	34089216	34089416	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046184, intron 3 of 4)	intron (NR_046184, intron 3 of 4)	-11308.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	4.40519577724952	4.30724139915694	4.93450065160245	4.42143195984889	4.55403431300163	4.48936955232625	5.0538503552446	4.65654790241958	0.375319380841042	0.340143024773928	0.649212461324196
Merged-chr4-132380958-4	chr4	132380852	132381052	+	898.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161797, intron 3 of 12)	intron (NM_001161797, intron 3 of 12)	-27266.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	4.1206355124875	4.45931730008578	4.17273218868816	4.12002531624876	4.3708006522635	4.39874656372071	4.50333419377047	4.82678627650849	0.730094889403754	0.0626909802155216	0.265313140750176
Merged-chr17-43265995-4	chr17	43265889	43266089	+	904.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-4358.0	NM_133776	77596.0	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	4.14391515826959	4.27444721767622	4.14453644946989	4.10269150447866	4.41457162904293	4.22170250798827	4.33897361371951	3.70256663225909	0.099297046045458	0.820551433529464	0.931246110287796
Merged-chr17-56162398-4	chr17	56162298	56162498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025566)	promoter-TSS (NM_025566)	-93.0	NM_025566	66443.0	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	8.07780029519463	8.5890946898913	8.11137890340493	7.9523293085407	8.18574039711669	8.33292539373634	8.3607905805637	7.73010460380809	-0.0375855361980196	0.861829931930258	0.94786910480645
Merged-chr13-92526131-3	chr13	92526032	92526232	+	949.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173392, intron 1 of 17)	intron (NM_173392, intron 1 of 17)	4678.0	NM_173392	218441.0	Mm.259585	NM_173392	ENSMUSG00000021706	Zfyve16	AI035632|B130024H06Rik|B130031L15|mKIAA0305	zinc finger, FYVE domain containing 16	protein-coding	4.08676628090976	4.35743784597881	4.13199358316783	4.20671136556694	3.66371068502711	3.6484660780509	4.02360677322714	3.94111895557902	-1.04183802595868	0.0200385327049252	0.128220309187691
Merged-chr15-79413945-4	chr15	79413858	79414058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10655.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	6.63248361282279	6.47762735809723	5.89684774721873	6.68827841432152	6.44318238238291	6.33516641305434	6.37630068302246	6.5841086014138	-0.0486569400248878	0.848256266373472	0.942625689889496
Merged-chr2-167605392-4	chr2	167605289	167605489	+	796.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26616.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	3.71633569319711	3.66968538193878	3.48668476515545	3.70118425232008	3.98005318059528	3.72384645076576	3.75302526033092	3.9541437458441	0.623623582714975	0.17421798912302	0.468550678145071
Merged-chr16-57518840-2	chr16	57518740	57518940	+	880.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-30402.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	3.1926934838019	3.26376099328599	3.31986023963435	3.62507278438383	3.36583075511104	3.60502486674102	3.52697912620848	3.53964158026973	0.435861151447067	0.418847930963672	0.712112541828539
Merged-chr11-94348143-4	chr11	94348067	94348267	+	940.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 29 of 30)	intron (NM_029600, intron 29 of 30)	20166.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	4.62968220131239	4.51586093286737	4.39932322384559	4.24815888734045	4.30056933605092	4.18979137381339	3.93497949462577	4.69564975215536	-0.323491292258271	0.444745762283638	0.731064583935779
Merged-chr7-116444422-4	chr7	116444353	116444553	+	834.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011083)	promoter-TSS (NM_011083)	-995.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	3.86048984567265	3.89155956676557	4.05695213861499	3.85003758360756	3.79151386742259	3.9826248190486	3.9932700612267	4.26285258181049	0.274590902837707	0.529367934439808	0.785614700149936
Merged-chr1-171270316-4	chr1	171270213	171270413	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020579)	promoter-TSS (NM_020579)	-15.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	5.75604042328558	5.27255144988934	4.69514070121689	5.31078498534053	5.46623146570124	5.20382403639858	5.07268716013638	5.05893204394424	-0.167598393125864	0.639790091161971	0.847737651460711
Merged-chr17-7396258-3	chr17	7396174	7396374	+	678.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCCC)n|Simple_repeat|Simple_repeat	-10969.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	3.41437066856649	3.23856755068698	3.62443368786903	2.86723896092235	3.5717160781335	3.4116340230846	3.50887750566339	3.57296114434091	0.72626754244611	0.207160538030514	0.511175781726586
Merged-chr4-140902570-3	chr4	140902455	140902655	+	677.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3805.0	NM_008812	18600.0	Mm.2296	NM_008812	ENSMUSG00000028927	Padi2	Pdi|Pdi2|mKIAA0994	peptidyl arginine deiminase, type II	protein-coding	3.26310954433234	3.04417181298815	3.14097367404986	3.20376438211789	3.28959252167695	3.43477127631095	3.25129305741156	3.57139394769584	0.807681934766855	0.131298385350613	0.403422592198535
Merged-chr11-95825093-4	chr11	95824994	95825194	+	938.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153104, intron 1 of 2)	intron (NM_153104, intron 1 of 2)	594.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	4.45945605485076	4.37632657543036	4.08548683373154	4.44742851740671	4.42640551021762	4.4142485044062	4.2207421651095	4.74597151475982	0.247782377755457	0.529004324145819	0.785374578432655
Merged-chr2-156725536-3	chr2	156725433	156725633	+	942.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042487, intron 1 of 6)	intron (NM_001042487, intron 1 of 6)	4254.0	NM_001042487	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	4.02281342451577	4.14651008668335	3.77317480090221	3.96005881374667	3.73192920963085	4.19233004655248	3.86304472898889	3.59469639402833	-0.347171820528071	0.457240805083477	0.740404105490293
Merged-chr13-58448242-4	chr13	58448099	58448299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44856.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	6.22357531960022	5.67443707096893	6.90817199929215	6.48153710508569	6.29946640704479	6.23130680284495	6.68469727993376	6.5853745594228	0.0972057339844279	0.749984776538769	0.901575153421712
Merged-chr9-55254081-4	chr9	55253972	55254172	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	LTR37-int|LTR|ERV1	29553.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	5.59587891809686	6.45234652926475	5.86558464259986	5.23133718930068	5.52158971802554	5.92573996998957	5.42565187419761	5.25289861044585	-0.513160185657525	0.157877507477213	0.444699766708372
Merged-chr9-13587280-4	chr9	13587184	13587384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32705.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	8.45643625608977	8.7546118952194	8.47309790211369	8.68708086370527	8.60675787112098	8.59869505689568	8.71855489464439	8.51741519405323	0.010086431886122	0.948644046985538	0.981505068413072
Merged-chr9-108347803-4	chr9	108347713	108347913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311157)	promoter-TSS (NM_001311157)	-18.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	7.90314616175172	8.40243758098955	8.05819003921244	7.79943051934677	8.06894938479181	8.2810409762865	8.02630369101118	8.29137584406613	0.143421661993135	0.458959248511546	0.741685064473581
Merged-chr9-107950942-4	chr9	107950837	107951037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011634)	promoter-TSS (NM_011634)	-26.0	NM_011634	22036.0	Mm.297870	NM_011634	ENSMUSG00000032586	Traip	Trip	TRAF-interacting protein	protein-coding	6.02684741655902	5.45529126847331	5.45417661404572	5.41680782431006	5.48125847659435	6.14139544175006	5.67180194994599	5.61981877408476	0.23509207316724	0.44804651836235	0.73332468018769
Merged-chr16-19967197-4	chr16	19967103	19967303	+	770.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183390, intron 1 of 6)	ORR1E|LTR|ERVL-MaLR	15846.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	3.84687926396983	3.86855011172899	4.03447423930373	4.04279217737631	3.89255103616135	3.55179784401734	3.92741797663764	3.74048143393795	-0.466825495642095	0.306987304326503	0.619287657993402
Merged-chr5-76292853-3	chr5	76292741	76292941	+	845.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007715, intron 2 of 22)	L1_Mus2|LINE|L1	10661.0	NM_001305222	12753.0	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	3.42977263165859	3.58480963616327	3.94930568602611	3.40504223142758	3.55717364198807	3.35608530993025	3.41737298568982	3.30673028215631	-0.615047824716712	0.251236454967764	0.562616316757919
Merged-chr4-134929812-4	chr4	134929703	134929903	+	920.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1177.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	4.16235463862569	4.46200571266736	4.38513358050807	4.01958562786599	4.20507782752693	4.28914867980176	4.28151711493284	4.38230410852886	0.0764434715517879	0.849120276072127	0.943016077779251
Merged-chr15-88490462-4	chr15	88490356	88490556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109846.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	7.07927111769749	6.86783354806503	6.71757173823523	7.07040335011025	7.02889940899234	7.1086088055476	7.09051877869375	6.90050685679134	0.115163246472715	0.562645929077613	0.805725270814111
Merged-chr4-86943491-3	chr4	86943398	86943598	+	992.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31A_Mm|LTR|ERVK	69084.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	4.1149052886281	3.94923468885249	3.79209384177405	3.96743437215312	2.80892677802261	3.03023484065116	2.9895502745681	3.29178973863055	-4.3084179120916	2.100815551213e-07	8.41970439863682e-06
Merged-chr11-101468087-4	chr11	101467990	101468190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009708)	promoter-TSS (NM_009708)	-85.0	NM_009708	11858.0	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn|rho7	Rho family GTPase 2	protein-coding	5.17889728366166	5.71705467803238	5.3130910010832	5.6384847102294	5.61433806557485	5.42510891896042	5.40678828903553	5.51358213705739	0.00172538654859467	0.995302202881285	0.998283592902656
Merged-chr7-30418985-3	chr7	30418907	30419107	+	855.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011827, intron 1 of 3)	RMER4B|LTR|ERVK	847.0	NM_011827	23900.0	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	3.1626896251471	3.1718664059609	3.40595779284604	2.76853678416009	3.25046729924088	3.77965365270905	3.54637066514753	3.40395527237601	1.31855848527804	0.0254810727204334	0.15045352759583
Merged-chr5-17839751-4	chr5	17839640	17839840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	-3844.0	NM_007643	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	7.59489340238988	7.56236977361502	7.4964399196671	7.85557144071991	7.65431876873255	7.88174077048908	7.37175610962954	7.30877567870049	-0.0898971320070102	0.659765139728275	0.858511231617683
Merged-chr11-83530658-4	chr11	83530557	83530757	+	946.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013653)	promoter-TSS (NM_013653)	-139.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	5.27628884455309	5.72346940715848	4.51436760795436	4.1157064145158	5.87873366736767	5.62310195959094	5.28021364611461	5.17862285683005	0.769411774989401	0.267441103906428	0.579170936319693
Merged-chr15-75062317-4	chr15	75062201	75062401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13464.0	NM_001252056	17067.0	Mm.1583	NM_010741	ENSMUSG00000079018	Ly6c1	AA682074|AA959465|Ly-6C|Ly-6C1|Ly6c	lymphocyte antigen 6 complex, locus C1	protein-coding	5.49126581753421	5.30646948791888	5.14630367635418	4.19843708264549	5.83887781178052	5.77326543117382	5.84021098067711	5.73769409463292	1.19160699009761	0.00150492846144541	0.0187238774614967
Merged-chr17-42887631-4	chr17	42887525	42887725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11201.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	5.97801240214015	6.06990851063828	5.88785265644491	5.99554010690195	6.24160212890239	6.04005707444246	5.90409443551655	5.88367495645322	0.0777106282696716	0.749530531095655	0.901363997919505
Merged-chr13-85288008-3	chr13	85287921	85288121	+	915.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145452, intron 1 of 24)	intron (NM_145452, intron 1 of 24)	1465.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	3.23193769819886	3.23896000508863	3.56876808416877	3.32958606714596	3.27943985298757	3.40824341606071	3.50370711632684	3.61490709629573	0.367639609555865	0.481333647499726	0.756510503784291
Merged-chr4-41464645-2	chr4	41464545	41464745	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025539)	promoter-TSS (NM_025539)	203.0	NM_024241	109242.0	Mm.370288	NM_024241	ENSMUSG00000028438	Kif24	4933425J19Rik|9430029L23Rik	kinesin family member 24	protein-coding	5.70407966407722	5.6467818795407	6.09200964992235	5.69226784452007	5.86822237751813	6.26353300493345	5.8486705635119	6.21682159003112	0.432414106842595	0.105119514053905	0.35662274871755
Merged-chr7-30842270-4	chr7	30842178	30842378	+	832.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13900.0	NM_001033316	233080.0	Mm.291167	NM_001033316	ENSMUSG00000019429	Ffar3	Gm478|Gpr41	free fatty acid receptor 3	protein-coding	3.50705538290461	3.71366885082037	3.50747544334044	3.53195206768112	4.30313113481773	4.19168210870329	3.74248787184845	4.66268489743188	1.90493077864507	8.83684441735122e-05	0.00183167661264602
Merged-chr11-117166638-3	chr11	117166543	117166743	+	864.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33018.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	4.02879589368007	3.78109856913432	3.47369723853233	3.64335367938012	3.92603368915053	3.65169104524976	3.6363164251127	3.7024201959945	-0.000946061446910237	0.99845004971591	0.999317736028615
Merged-chr13-94173885-3	chr13	94173786	94173986	+	987.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	111395.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	4.7378017633545	4.8276221560294	4.51411501048528	4.99035643530638	4.04951449554849	4.31910660534324	4.17308414607717	4.28877444275461	-1.3767219442417	0.000399129980798962	0.00643112398438688
Merged-chr11-9337332-4	chr11	9337178	9337378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 27 of 61)	intron (NM_178259, intron 27 of 61)	145336.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	5.54835567665962	5.57187567694396	5.49193354054388	5.57209124357651	5.82310447808707	5.80569316896755	5.65366669342595	5.92931463750677	0.428674008096978	0.0923320879672438	0.332377772185326
Merged-chr3-69607070-4	chr3	69606986	69607186	+	976.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8126.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	6.08888358438708	6.14013256640505	5.64560321397035	6.17256264336615	5.84357714938165	6.24420013818851	5.26871554128489	5.87134073928804	-0.295341558430922	0.33111164444848	0.642297043289104
Merged-chr14-31401107-4	chr14	31401004	31401204	+	956.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	16573.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	5.05230674348255	4.79456285372775	4.57740606391049	4.87278136182444	5.04069260782272	4.75455229929334	4.6822279580124	4.81599566792068	0.00741632329500668	0.982765899213928	0.993865312500427
Merged-chr1-181234506-4	chr1	181234388	181234588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22510.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	5.30589406288092	5.13839540745413	5.33485010804318	5.13181319403455	5.01453104259809	5.19695115682348	5.13113642638766	4.9074854075977	-0.299183812570578	0.323595764885844	0.635066391375817
Merged-chr10-125966180-4	chr10	125966068	125966268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177152)	promoter-TSS (NM_177152)	-51.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	6.60834985210798	6.55380706697331	7.11925920416366	6.56664652002045	6.42302196577819	6.54523164099601	6.68087214601969	6.57294236029352	-0.245613888487737	0.291564271315785	0.603889113309267
Merged-chr4-150606007-4	chr4	150605919	150606119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	46155.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	5.89603748865945	5.74183371220641	6.08779014195412	6.27698228452368	5.91715431800841	5.47801557348697	5.82070624467862	6.02307438531515	-0.316872595590477	0.251534473320851	0.562872232585856
Merged-chr13-33004635-4	chr13	33004525	33004725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009256)	promoter-TSS (NM_009256)	84.0	NM_009256	20723.0	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	7.60249692303712	7.17090641403037	7.44925619473942	7.54195170422973	7.59675635945966	7.43951102469897	7.97052616253527	7.3745047647173	0.219422196817885	0.29471789275798	0.606836324123356
Merged-chr5-148464629-4	chr5	148464567	148464767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64763.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	6.95628197553444	6.8203899339408	7.22718327258294	7.34979682486516	6.62334736676616	6.59678014135073	6.71920979133604	6.52336651656516	-0.700007343842042	0.00132492321964997	0.0169099354225328
Merged-chr16-64907654-4	chr16	64907482	64907682	+	920.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55581.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	3.62493792853426	3.59790077947014	3.56689890682807	3.9147120398712	3.90819347109698	3.74245529351644	3.91256623622284	3.92748109830708	0.505151603323486	0.283762746677661	0.595814772571451
Merged-chr14-106194319-3	chr14	106194227	106194427	+	895.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	88129.0	NR_073203	212085.0	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	3.29513812085696	3.5136609215236	3.40228757126572	3.40093516210487	2.95889552566358	3.01845183635627	3.16794738173991	3.17760947295654	-1.29249636730762	0.0232147471464119	0.141194778017128
Merged-chr1-95646231-3	chr1	95646111	95646311	+	962.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 3 of 3)	intron (NM_001159745, intron 3 of 3)	21383.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	4.37544879210006	4.03020740508481	4.56656552618209	4.91055954669289	4.14698898190916	4.12188152042765	3.80686385617177	4.09983196093413	-1.15633588291914	0.0117831530215256	0.0887245370696253
Merged-chr1-171699207-3	chr1	171699117	171699317	+	800.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360767, intron 2 of 2)	intron (NM_001360767, intron 2 of 2)	17225.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	3.36231698201277	3.39142475625024	3.10310594835682	3.08519202465057	3.60098406952217	3.7960471304995	3.4069990901657	3.52682473111435	1.2211085814921	0.0196246189756833	0.126347850130081
Merged-chr15-82127836-4	chr15	82127743	82127943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172428)	promoter-TSS (NM_172428)	-79.0	NM_172428	76457.0	Mm.440373	NM_172428	ENSMUSG00000068114	Ccdc134	2310042L06Rik|AW208859	coiled-coil domain containing 134	protein-coding	8.78349230889728	8.75013723176256	8.61859698004641	8.57211637110185	8.52022275261021	8.51037015176645	8.84078931354061	8.62669841334715	-0.063723975842318	0.687939173666528	0.87257074872168
Merged-chr12-4189843-4	chr12	4189734	4189934	+	970.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 3 of 21)	intron (NM_001159537, intron 3 of 21)	44131.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	5.53240139501306	5.22709234301875	5.35278158056845	5.35194873055195	4.99452126320133	5.06730551952448	4.78413644549643	5.13813118478349	-0.68693896253774	0.0244581131758243	0.146233014510037
Merged-chr1-54883202-1	chr1	54883102	54883302	+	640.0	f0_balb.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	43185.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	2.87102367200768	3.01262188633234	3.03922788247477	2.88967905561537	2.8542442400758	2.63154244871471	2.73691991652391	2.7439193123749	-0.963455390061144	0.133945608096485	0.407538410666194
Merged-chr8-22653389-4	chr8	22653310	22653510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011130)	promoter-TSS (NM_011130)	27.0	NM_011130	18970.0	Mm.123211	NM_011130	ENSMUSG00000031536	Polb	A430088C08Rik	polymerase (DNA directed), beta	protein-coding	6.16179887677214	6.290778380322	5.87869939630882	5.98975429343245	6.09271031653111	6.19361852749828	6.0300529799173	6.17788965318717	0.0571420064568643	0.810745508573285	0.926854276252049
Merged-chr4-83273099-2	chr4	83272999	83273199	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 2 of 19)	RMER17B|LTR|ERVK	51090.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	3.21676485938103	3.09568541940635	3.10529932232462	2.83257611396701	3.25427930234645	3.02524435872111	2.90797742445381	3.10366513573397	0.0968032185958856	0.870966847515879	0.951515750732959
Merged-chr13-32312881-4	chr13	32312767	32312967	+	873.74585	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146041, intron 1 of 10)	intron (NM_146041, intron 1 of 10)	25677.0	NM_146041	218138.0	Mm.247143	NM_146041	ENSMUSG00000038372	Gmds	BC031788|C87208	GDP-mannose 4, 6-dehydratase	protein-coding	4.57731357151738	4.60096474481129	4.48910331877587	5.01603085152497	4.77790830277099	4.98424804198171	4.82504034064653	4.6978850164998	0.226161579500453	0.535896582069311	0.790024643355459
Merged-chr18-33795556-2	chr18	33795413	33795613	+	923.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013512)	TTS (NM_013512)	621.0	NR_038151	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	2.65898841718017	2.6631548578664	2.73272352369489	2.9685979146034	3.03636165446956	2.97721935428893	3.09185089362956	3.25468697577954	1.34767791753902	0.0404088407177704	0.203097469454445
Merged-chr8-115618338-8	chr8	115618230	115618430	+	904.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	88564.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	4.17831630451413	3.7114279591307	4.04994530357714	3.90425040024147	3.89549769868266	3.97568179140325	3.93918036042979	3.95361363008683	-0.0695699191045583	0.873733937171019	0.952712014565765
Merged-chr7-99089098-4	chr7	99089007	99089207	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 4 of 14)	intron (NM_178635, intron 4 of 14)	52037.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	5.80191239412397	5.90294541715767	5.73441822948076	5.75006703753229	5.41985851735493	5.39980118755586	5.12335373932742	5.41175970978303	-0.771023929864909	0.00457506142881319	0.044451037051801
Merged-chr7-100591100-4	chr7	100590995	100591195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003559, intron 1 of 7)	intron (NR_003559, intron 1 of 7)	319.0	NR_153425	52443.0	Mm.473730	NM_198831	ENSMUSG00000030706	Mrpl48	1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e|L48mt|MRP-L48	mitochondrial ribosomal protein L48	protein-coding	6.76257865853605	6.82238011788301	6.74972806102485	6.68035714114682	6.42055377740567	6.66029810122489	6.51783805482644	6.61102768435463	-0.291409456274845	0.152689889155553	0.437022542933093
Merged-chr16-49905497-7	chr16	49905411	49905611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 8 of 9)	intron (NM_010581, intron 8 of 9)	49857.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	5.31094396968686	5.93944303185933	6.14447850117577	5.83249028539879	5.99343468894874	6.13504377544681	6.01420704316228	6.23195014133447	0.397655838544725	0.148055436595897	0.429596751924479
Merged-chr12-82257080-3	chr12	82256954	82257154	+	930.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-54295.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	4.00857711916471	3.67905342651405	3.78475412804772	3.61916313250877	3.47648084839171	3.62893116606299	3.76860174130529	3.62615821134867	-0.455838548365556	0.345149673035301	0.653458042796566
Merged-chr4-133662543-3	chr4	133662493	133662693	+	930.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001145956, exon 3 of 3)	exon (NM_001145956, exon 3 of 3)	10054.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	4.02860602055291	4.12185585898928	3.98963112812354	3.85786473480585	2.82854169496089	3.05495053330141	3.0921112323588	3.24748391685322	-4.34588908745715	1.2828285657464e-07	5.37752971032173e-06
Merged-chr8-105305791-5	chr8	105305714	105305914	+	834.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_148952)	TTS (NM_148952)	213.0	NM_172760	234683.0	Mm.237966	NM_172760	ENSMUSG00000014791	Elmo3	9930107J06|BC058752|CED-12|Ced12	engulfment and cell motility 3	protein-coding	3.62408252165203	3.07703478791875	3.29915779074538	3.10745053294323	3.62144334873104	3.47479783649399	3.56025413333229	3.47012917894723	0.867110792216038	0.106781890682808	0.360348218742401
Merged-chr7-99374529-3	chr7	99374438	99374638	+	726.533325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6980.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	3.46499840951997	3.28526459195259	3.14307534066538	2.91569623342261	4.02688372428828	3.69599963525576	3.61133125676114	3.62508758811882	1.88961880262358	0.00051374865548899	0.0078844578587863
Merged-chr11-32881790-3	chr11	32881691	32881891	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57197.0	NM_027050	69351.0	Mm.65488	NM_027050	ENSMUSG00000020270	Smim23	1700008A04Rik	small integral membrane protein 23	protein-coding	3.478914709091	3.15069229978864	3.11301576745252	3.8808827388745	2.64989102543991	2.80146593639905	2.76358872108314	2.76978372982425	-3.6078697283713	1.43764039309397e-05	0.000382393224689064
Merged-chr4-139130345-4	chr4	139130256	139130456	+	927.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163006, intron 1 of 3)	CpG	681.0	NR_033745	433771.0	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	4.39645222312616	4.29670873825117	4.56447534465437	4.20443203815691	4.80147947595522	4.48041890601287	4.46305719665655	4.83847068929043	0.700483994403941	0.0607132777416538	0.2603240562914
Merged-chr8-39642758-4	chr8	39642665	39642865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031195)	promoter-TSS (NM_031195)	-87.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	6.82402349733792	7.04265212550341	7.13064346862256	7.51901583979458	6.26149894038327	6.58144675704837	6.74838130309932	6.33809817821411	-0.957297795292698	8.60039719854838e-05	0.00178944072550563
Merged-chr7-113594575-4	chr7	113594475	113594675	+	896.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29588.0	NR_126544	69295.0	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	4.41473018975285	4.30393575947538	4.0825240458753	4.79801354859042	4.40261235105939	4.09404317452953	4.62239313620461	4.41261848187479	-0.111770369868757	0.794583471955041	0.920576505358097
Merged-chr8-85557727-4	chr8	85557624	85557824	+	934.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2453.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	4.6114273339253	5.09164563220288	4.51930683475469	4.42023284148861	5.28107992184476	5.3254057716516	5.09885259791757	4.81605680103141	0.924670005605826	0.0108835270099022	0.0838759819226754
Merged-chr11-54736976-3	chr11	54736838	54737038	+	773.549988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 3 of 5)	intron (NM_178626, intron 3 of 5)	50765.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	2.94734888923039	2.73717850190561	2.77705614439084	2.89127544939652	2.6257933942503	2.5319766021256	2.82571828795682	2.50651394559467	-1.06213317613419	0.119459302401163	0.38243202687831
Merged-chr15-59866896-4	chr15	59866787	59866987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71928.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	7.1527004196873	7.63114143668533	7.18805238341272	7.03007448829865	7.24167532736616	7.28412099307127	7.21732605786972	6.86583919882075	-0.14109826337098	0.521531214553876	0.781462832085722
Merged-chr5-24100541-4	chr5	24100451	24100651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026448)	promoter-TSS (NM_026448)	-39.0	NM_026448	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	6.47532675722858	6.51503813768127	6.43950577776617	6.34789032617771	7.03483959297769	7.31703319028044	7.2934469197532	7.01192315707223	1.02596906216682	3.90732289062415e-07	1.48093363169189e-05
Merged-chr12-71012255-4	chr12	71012158	71012358	+	692.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045056, intron 2 of 2)	B4A|SINE|B4	3565.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	3.62046844009707	3.49215647430352	3.77628712158452	4.12315997806374	3.73182818483304	3.27878038492113	3.80753188890871	3.67279009768085	-0.442117815588087	0.413082476561395	0.708040494116203
Merged-chr6-29767920-2	chr6	29767827	29768027	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021414)	promoter-TSS (NM_021414)	-516.0	NM_021414	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	5.78337905601007	5.68815947430187	4.70915192217531	5.11620294706459	5.99680256490832	5.7364963475093	5.70848114463684	5.84679041929512	0.741013972653043	0.0315388983990791	0.173111147202137
Merged-chr10-61452916-4	chr10	61452814	61453014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010124)	promoter-TSS (NM_010124)	-245.0	NM_010124	13688.0	Mm.259516	NM_010124	ENSMUSG00000020091	Eif4ebp2	2810011I19Rik|4E-BP2|AA792569|BC010348|PHAS-II	eukaryotic translation initiation factor 4E binding protein 2	protein-coding	8.92938491082964	8.91051291348221	8.83590546664756	8.65910093000291	8.91974818934965	9.02962993625231	8.90171992686854	8.5729801978206	0.0412149942457855	0.802738013968789	0.923936032101707
Merged-chr6-54960102-4	chr6	54959936	54960136	+	799.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	11625.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	3.45113841025196	3.61045757696719	3.69738570978514	3.64008455701905	3.99749632226632	4.20962317584451	3.56680450746384	4.23709923577946	1.19783469002834	0.013275673216523	0.0964135439117322
Merged-chr4-149173859-4	chr4	149173741	149173941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7136.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	6.8293218797593	7.09969454566355	7.0167778251527	7.33186670009202	6.70218480436005	6.93436863707253	7.1428652697362	7.03630092935884	-0.191406170408563	0.377555963102031	0.680235297482457
Merged-chr2-38286709-4	chr2	38286548	38286748	+	874.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 1 of 21)	intron (NM_146122, intron 1 of 21)	736.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	4.12495684292407	4.00644754427509	4.5006389425263	4.17841961281346	4.32449906600892	4.25079899944943	4.05922408527905	4.26064562251423	0.0514880941314756	0.899734673032096	0.962765740491462
Merged-chr5-106681128-4	chr5	106681027	106681227	+	971.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026856, intron 1 of 6)	intron (NM_026856, intron 1 of 6)	15703.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	5.30927236889641	4.78002703760955	4.92534624580563	5.13422421207321	5.06019375695342	5.1005677555272	5.43609274409128	5.02948382779284	0.210527154691646	0.519469943793787	0.780109400619155
Merged-chr2-79193998-3	chr2	79193897	79194097	+	846.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61429.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	4.1361862951398	3.97131382353364	4.720145365696	4.85576138275432	3.81735994700365	4.04890260129499	4.34201394251526	3.97786122303667	-1.04623222913184	0.0295745867604921	0.165637698562048
Merged-chr2-58282722-4	chr2	58282613	58282813	+	885.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033369, intron 5 of 7)	intron (NM_001033369, intron 5 of 7)	5934.0	NR_040365	100502932.0	Mm.417207	NR_040365	ENSMUSG00000086995	Gm13544	-	predicted gene 13544	ncRNA	4.3481921428414	4.50242722642385	4.09144923734343	4.33031254058443	4.75836351643479	4.43101637218949	5.05123346325457	4.52089757005563	0.859149170814246	0.026707847068475	0.155227315423734
Merged-chr16-14367037-4	chr16	14366875	14367075	+	800.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008576, intron 1 of 30)	L2|LINE|L2	5417.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	3.46477654046899	3.55262012781411	3.66683271487749	3.20092247150581	2.96576102060118	3.58318413871655	3.1497586804055	3.56782882474564	-0.476928560797246	0.420229842665833	0.713162823854942
Merged-chr1-195241706-4	chr1	195241579	195241779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-64964.0	NM_007758	12902.0	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	8.46183779202104	8.48259951209904	8.87977826699414	8.64438813016358	8.22528687268648	8.26949830186479	8.4932827326593	8.9891659546723	-0.121722038855076	0.565597944313357	0.807629114072388
Merged-chr12-8902813-4	chr12	8902722	8902922	+	897.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-18485.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	4.63272447417871	4.39021924156578	4.70512782954447	3.54018707338961	4.63449395644163	4.76867736936943	4.2795001073793	4.43170418745545	0.333430642934499	0.493292271607176	0.764102772474043
Merged-chr7-126704274-4	chr7	126704177	126704377	+	847.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301374)	promoter-TSS (NM_001301374)	-57.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	4.13335732503425	4.00080541042148	3.83857654450718	3.61468433848994	4.14418166325478	4.01534287228625	4.11531424619537	4.21631120288147	0.622870631500068	0.155451126639596	0.441051847934254
Merged-chr9-83448008-3	chr9	83447895	83448095	+	938.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102437, intron 2 of 2)	intron (NR_102437, intron 2 of 2)	-6868.0	NM_029434	75782.0	Mm.199698	NM_027448	ENSMUSG00000032258	Lca5	4930431B11Rik|5730406O13Rik|AV274874|ORF64	Leber congenital amaurosis 5 (human)	protein-coding	4.04095461230056	4.06419502079311	4.21099897128093	3.89719789630741	3.80665557851724	3.66944677898248	3.77721666117456	4.03907239724148	-0.6141569958758	0.171358893711526	0.464582718652118
Merged-chr11-72216657-4	chr11	72216563	72216763	+	876.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163728, exon 1 of 1)	3' UTR (NM_001163728, exon 1 of 1)	-1071.0	NM_026068	67279.0	Mm.159496	NM_026068	ENSMUSG00000020801	Med31	3110004H13Rik|CGI-125|l11Jus15	mediator complex subunit 31	protein-coding	4.22159612892927	3.96331380096947	4.07753916250987	3.84157908814214	4.5358448902781	4.6388957966289	4.24774423819936	4.21961007470658	1.00979896948618	0.0131002458263026	0.0955098225617526
Merged-chr8-41003208-4	chr8	41003098	41003298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 7 of 13)	L1MB2|LINE|L1	-14270.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	6.64733914626518	6.61723928392403	6.81937482539218	7.28071047682776	7.38571532992277	7.18495170495957	7.44415234292848	6.81452780168192	0.474968455049904	0.0577697100308472	0.252294773771411
Merged-chr9-66344819-3	chr9	66344720	66344920	+	884.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-5630.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	4.08885884170006	3.97963132351155	3.74249941929262	3.58256009735392	3.55001579597208	3.51122148098566	3.38900632968068	3.83785829635623	-0.862755175152822	0.0949830337818179	0.337196875888081
Merged-chr13-85189393-4	chr13	85189282	85189482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347588)	promoter-TSS (NM_001347588)	-3.0	NM_001347587	66671.0	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	8.19972718529189	8.67203119853133	8.28465140360129	8.09360062488534	8.62167632570273	8.90549210077316	8.45727128902052	8.21404435431247	0.308026802727166	0.139046200523536	0.414593226669937
Merged-chr6-47835678-4	chr6	47835556	47835756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027477)	promoter-TSS (NM_027477)	-5.0	NM_027477	272347.0	Mm.169059	NM_027477	ENSMUSG00000062519	Zfp398	5730513I23Rik	zinc finger protein 398	protein-coding	6.67076856808482	6.64612218148881	6.5586533233522	7.13805182098675	6.79467870076985	6.66692674915312	6.86299771558648	6.9186484624205	0.0265856004240286	0.907942873354066	0.965929300548068
Merged-chr13-94381619-4	chr13	94381517	94381717	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009680, intron 1 of 26)	intron (NM_009680, intron 1 of 26)	22657.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	4.75667049358435	4.62785671267783	4.94935852808379	5.32119838193695	5.37492384805284	5.01363121661401	5.02742979727824	4.946038971971	0.281153266848915	0.43788758925265	0.726079330089729
Merged-chr8-108743379-4	chr8	108743267	108743467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	28723.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	6.11598144360892	5.84555476105051	6.21301318220336	6.37409671439668	5.88549226914833	5.72875933690074	5.79726059447647	6.29758671637469	-0.334910004699975	0.21566427427556	0.521886427505952
Merged-chr4-126468711-4	chr4	126468596	126468796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317173)	promoter-TSS (NM_001317173)	-113.0	NM_153403	236511.0	Mm.30800	NM_153403	ENSMUSG00000041530	Ago1	Eif2c1	argonaute RISC catalytic subunit 1	protein-coding	7.69191082667451	7.75055141925286	6.9543484842381	7.43863475552352	7.45797758674391	7.41044525442383	7.49701619424461	7.40723301280293	-0.0691095299424955	0.748604684599304	0.901023223134367
Merged-chr2-129514491-4	chr2	129514362	129514562	+	984.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	22140.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	4.95180026585939	4.84423283742899	4.32123222970067	4.61024073118942	4.89593048488987	5.39016720375928	4.86043305910152	4.60807381128249	0.5389048344029	0.158316947358524	0.445153637183645
Merged-chr8-86746145-4	chr8	86746053	86746253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009172)	promoter-TSS (NM_009172)	-147.0	NM_009172	20437.0	Mm.324553	NM_009172	ENSMUSG00000036840	Siah1a	AA982064|AI853500|Sinh1a	siah E3 ubiquitin protein ligase 1A	protein-coding	6.89961221225496	6.80494978185359	6.60831924839649	6.73439127066077	6.76420913274649	7.06382154643845	6.92918353744092	6.86957964305417	0.197087282776334	0.326029493977477	0.637555604620255
Merged-chr14-61971651-4	chr14	61971566	61971766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-289293.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	5.74912534834987	5.21003299482719	5.62716917399336	5.90876259847837	5.6295987463045	5.34625891822015	5.72086747655912	5.64874500379073	-0.109022705731855	0.714686799498422	0.885986584138812
Merged-chr9-61946055-4	chr9	61945966	61946166	+	931.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024245, intron 1 of 22)	intron (NM_024245, intron 1 of 22)	733.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	4.61600971698762	4.56440155240534	4.73595212297443	4.81751890820558	4.77482598057705	4.79146404289412	4.55375888366919	5.0640121766134	0.231033705606004	0.508201237657754	0.773396125844835
Merged-chr7-92653517-4	chr7	92653415	92653615	+	961.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029078, intron 8 of 15)	B1_Mus1|SINE|Alu	-16373.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	4.69315812322428	5.03383192422056	4.81244535721077	4.97550102627477	5.06794234520772	4.98594152810028	4.82665472925114	4.64890262232937	0.00896501940704462	0.978753051337109	0.992516114931184
Merged-chr3-59208931-5	chr3	59208835	59209035	+	922.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028808, exon 2 of 2)	3' UTR (NM_028808, exon 2 of 2)	1947.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	4.24249918142451	4.39676133371269	3.90251035299452	3.96655615748336	3.90417196055762	4.28170248814437	3.64776638411887	4.54260312681065	-0.0089736136607255	0.985351245581712	0.994679311230532
Merged-chr19-11957550-3	chr19	11957438	11957638	+	905.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8306.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	3.16052488121069	2.99098499545601	3.08192435220574	2.64110335723109	4.13862052530139	3.95805835822249	3.80919466456885	4.42733149443735	4.36698602949085	6.38153568751165e-13	7.05328150157441e-11
Merged-chr19-40247477-3	chr19	40247380	40247580	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016861, intron 3 of 6)	intron (NM_016861, intron 3 of 6)	24136.0	NM_016861	54132.0	Mm.5567	NM_016861	ENSMUSG00000055044	Pdlim1	CLP36|Clim1|mClim1	PDZ and LIM domain 1 (elfin)	protein-coding	3.9163526968475	4.41540572302016	3.69511169507945	4.51318692324936	3.67145011513134	3.87505722840652	3.73980551472441	3.91463229453488	-1.07425668883114	0.0305701932888705	0.169348259639545
Merged-chr7-130646241-4	chr7	130646197	130646397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004468, intron 3 of 21)	CpG	-46259.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	5.47135609347713	5.78140837066831	5.61159052423033	5.7549013157191	5.22508086672047	5.67747636994613	5.58326575836343	5.93116500293642	-0.0853665443074892	0.770873688123673	0.910321191255463
Merged-chr14-14974811-3	chr14	14974735	14974935	+	763.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195229, intron 29 of 34)	L1_Mus3|LINE|L1	154020.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	3.72303423644138	4.27121021661443	3.94750920734242	3.64315663930334	3.25623074835611	3.1512119690005	3.17845700326073	3.11252482105403	-2.67989210806323	1.66438057249971e-05	0.000434588938994707
Merged-chr10-14186798-4	chr10	14186715	14186915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	220436.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	7.36468834304887	7.49420386349873	7.44202025683931	7.51561489934147	7.03858899384959	7.22097316813732	6.92973151012055	6.90485963480168	-0.585829910320086	0.00148200772559837	0.018487176288182
Merged-chr11-5878330-4	chr11	5878229	5878429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361942)	promoter-TSS (NM_001361942)	-73.0	NM_008894	18972.0	Mm.35788	NM_008894	ENSMUSG00000020471	Pold2	50kDa|p50|po1D2	polymerase (DNA directed), delta 2, regulatory subunit	protein-coding	8.19679732516574	8.18099073699618	8.01281412754981	8.19325572755448	8.22487442260708	8.28972693563081	8.35121733332112	7.91459443222646	0.0709364434798385	0.675401275104554	0.866720525008871
Merged-chr3-98069486-4	chr3	98069369	98069569	+	903.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	55931.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	4.65042820029099	4.4773527698868	4.75529667299363	4.78625720698617	3.97409335326325	4.19234515148479	4.30373094004022	4.53471626075805	-0.979152720546911	0.0135412841615264	0.0977243298523051
Merged-chr15-58870143-4	chr15	58870082	58870282	+	954.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2467.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	4.29112277211386	4.32892635451937	4.24753356109632	4.08343242115788	4.37054041185673	4.46254077363512	4.08775215404815	4.19914900405768	0.145633096077309	0.713271354708289	0.885280331946177
Merged-chr19-55689764-4	chr19	55689661	55689861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	12443.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	5.95082603674676	6.1753509830754	6.17410769182835	6.34490228327123	5.85085077017149	5.55763131562602	5.85376494097397	5.53371277587856	-0.738404215848136	0.00434409990525499	0.0427674532719426
Merged-chr7-46917939-4	chr7	46917874	46918074	+	877.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021884, intron 1 of 9)	L2a|LINE|L2	1995.0	NM_001348089	22088.0	Mm.241334	NM_021884	ENSMUSG00000014402	Tsg101	AI255943|CC2	tumor susceptibility gene 101	protein-coding	4.19779866932143	3.44526841518826	3.42676620843477	4.2323304244473	4.00808631898633	3.8001821851659	3.72255131395267	4.03097994504322	0.0202288468347382	0.970849733779333	0.989540146809868
Merged-chr8-103588928-4	chr8	103588821	103589021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14878.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	6.24191315058436	5.83677775574283	5.95406799476009	6.54857993774168	5.9767910851016	6.01051688238894	6.21101467202124	6.12281245733486	-0.17636850790543	0.515412919773433	0.777533445789008
Merged-chr3-51238715-2	chr3	51238615	51238815	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009834, intron 1 of 2)	ORR1D1|LTR|ERVL-MaLR	14268.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	2.63756736614357	2.86386065079671	3.02327901013726	3.14610399019864	2.70913525519774	2.95137257432016	2.89669256405827	2.90556875951784	-0.327897698489095	0.614658090711301	0.834034302764837
Merged-chr3-62492771-4	chr3	62492669	62492869	+	880.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028136, intron 8 of 24)	intron (NM_028136, intron 8 of 24)	14219.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	3.89956782166276	3.6572428331404	4.05503466043643	4.4846623519294	4.0846540176152	4.27439800387083	4.174558692254	4.19077150719112	0.248611024416381	0.60125024540017	0.827071740947179
Merged-chr10-112928945-4	chr10	112928836	112929036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033474)	promoter-TSS (NM_001033474)	90.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	7.71810478893954	7.69212790231412	8.1924642014622	7.92860396676587	7.62999306628355	7.7209420788897	7.89240394914663	7.75455964333038	-0.192884622085256	0.303425461904279	0.616068715317473
Merged-chr2-84555628-3	chr2	84555532	84555732	+	919.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-48759.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	2.90583422464303	2.61654548645879	2.68391282829162	2.39556904725555	3.17407064703146	3.27442019515823	3.2505069963786	3.50180220314586	3.1208581141776	4.22813876682261e-06	0.000127848211250496
Merged-chr7-83631926-4	chr7	83631825	83632025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023377)	promoter-TSS (NM_023377)	-92.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	8.3052709374003	8.16902484316954	8.26118238227065	8.5557088077696	8.44767073908446	8.17587863074846	8.49121800618606	8.17823557196599	-0.00371630889130741	0.98313627251225	0.99395664486631
Merged-chr11-102429305-6	chr11	102429220	102429420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-1002.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	5.19726835332266	5.52236964178937	5.61682215116589	5.74657416688356	6.06933781322404	6.22765603696272	5.85827775599861	5.92787759862692	0.767633404645021	0.00539645592126079	0.0502504364232629
Merged-chr13-5615068-4	chr13	5614974	5615174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	243018.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	7.62483895661412	7.40921415481645	7.53997476739498	7.68693370756183	7.40342651197702	7.62456880161788	7.41056344481401	7.08980876229035	-0.238029494460558	0.21580345222212	0.522098974396461
Merged-chr7-142363277-3	chr7	142363171	142363371	+	896.3666380000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347541, intron 2 of 2)	intron (NM_001347541, intron 2 of 2)	8988.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	3.88968949018785	3.33999312299654	3.53684624933756	2.84760182181969	4.9443971902714	5.25966874239964	5.08347942405933	4.9148229929779	4.68671492710335	1.24605414783936e-18	3.49161624016472e-16
Merged-chr1-13426456-4	chr1	13426413	13426613	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52430.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	4.76063059929686	5.07419034352883	5.32230083223283	4.82808202434466	5.06886774257171	5.09213684453341	4.81892047198656	5.11695190605837	0.050377834894811	0.87974773967943	0.954974140832096
Merged-chr17-74811002-4	chr17	74810819	74811019	+	875.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152817, intron 13 of 19)	intron (NM_152817, intron 13 of 19)	93169.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	3.3679281406899	3.25306606692347	3.4251156982209	3.39916384214233	3.38623134918622	3.48229976044376	3.70377130866982	3.30738718463279	0.383114440983543	0.455111661497385	0.738746012503745
Merged-chr14-59556326-4	chr14	59556233	59556433	+	993.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41626.0	NM_001168537	71891.0	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	5.2069165381447	4.94015919800948	5.27181247213455	5.57909834424422	5.0331577858651	5.38394160084447	5.30613635260203	5.83540492023884	0.236626045018737	0.492658065154997	0.763658218913778
Merged-chr5-124052302-4	chr5	124052195	124052395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20035.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	7.57323012901822	7.81984448217072	7.48455064141009	7.35644971404426	7.54345550295356	7.75162150433731	6.89585463349992	7.3415124970408	-0.193164885356379	0.40053297872355	0.698297047011029
Merged-chr5-99251009-4	chr5	99250899	99251099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	1928.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.33058652426454	6.60224687658683	6.80174697037356	6.5654002549297	6.4940468797346	6.52690616288897	6.55550856174752	6.30818173083698	-0.160450523964853	0.466189330889727	0.74629927630325
Merged-chr17-31565471-3	chr17	31565373	31565573	+	940.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016670, intron 1 of 10)	CpG	700.0	NM_016670	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	4.35787383982119	4.54192837209535	4.44822354482255	4.34732472467327	4.81118673731299	4.44021294486727	4.38460658516011	4.8176417839945	0.482264448354612	0.193638575917037	0.493801955975881
Merged-chr11-103362948-14	chr11	103362839	103363039	+	936.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205236, intron 1 of 17)	intron (NM_001205236, intron 1 of 17)	753.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	3.60186742351178	3.46831415774058	3.65470988050588	3.47900742426389	3.52812780261332	3.66495005622249	3.35770784189562	3.92741562040178	0.272581284963581	0.585715405873392	0.818378126036201
Merged-chr19-32712270-4	chr19	32712134	32712334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026487)	promoter-TSS (NM_026487)	64.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	6.56703353560589	6.63110735168175	6.91082080888592	6.3702993049242	6.39467474924615	6.29706197440011	6.3847186977004	6.49881311387085	-0.328427454322319	0.15293903731863	0.437419043569042
Merged-chr15-77842289-4	chr15	77842189	77842389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022410)	promoter-TSS (NM_022410)	-114.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	9.09545412420852	9.15410444755214	8.95694052797978	8.93884180267908	9.1079715400425	9.31415301320718	9.04679644430087	9.08460467654647	0.128286562851806	0.386462723182079	0.687635667106349
Merged-chr9-66834839-4	chr9	66834737	66834937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026674)	promoter-TSS (NM_026674)	-131.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	8.91455540526856	9.09841890403774	8.62882345236227	8.76602659219695	8.89932509459553	9.09032963161357	8.908989080008	8.74362462678199	0.0647419028123877	0.700741607565602	0.879339000309196
Merged-chr9-85343222-5	chr9	85343158	85343358	+	898.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16108.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	3.5611838574258	3.22712826937712	3.87877532455514	3.58925036946683	3.28441064091415	3.45183311510326	3.19875297791488	3.45240544884827	-0.79596058287733	0.146027784400074	0.425918360343095
Merged-chr13-112427627-4	chr13	112427528	112427728	+	986.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-36442.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	5.2092449593188	5.56179553533631	4.95835326029003	5.12761651878668	5.50525454662254	5.4484482391329	5.44712118352721	5.33088805144437	0.367044411569171	0.222298462132391	0.530315094234949
Merged-chr5-38480252-4	chr5	38480130	38480330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102414)	promoter-TSS (NM_001102414)	76.0	NM_001102414	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	5.34927950235279	5.39287014470607	5.68385338061262	5.24307213124874	5.38809997697769	5.70321643075976	5.95540095578038	5.7738710440088	0.508538338241198	0.0813848928136636	0.309492891547751
Merged-chr7-25706500-4	chr7	25706416	25706616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12537.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	5.1483379079656	5.40676309366899	5.04712590471733	5.07224314125251	5.4381269360084	5.18734366548145	5.12408174820819	5.14569406199718	0.125249773887612	0.682232380570715	0.869682098720609
Merged-chr3-93506090-4	chr3	93505974	93506174	+	953.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14422.0	NM_016740	20195.0	Mm.280038	NM_016740	ENSMUSG00000027907	S100a11	EMAPI|Emap1|S100a14|S100c|cal	S100 calcium binding protein A11	protein-coding	4.29587717986115	4.38594871332237	4.69262340793761	4.6877404667074	4.30490337677322	4.16615006112369	4.23107656435142	4.54577168633981	-0.503252353824202	0.200862229978157	0.503014202146686
Merged-chr8-27113285-2	chr8	27113185	27113385	+	597.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_054044, intron 8 of 18)	intron (NM_054044, intron 8 of 18)	15347.0	NM_025686	66653.0	Mm.334467	NM_025686	ENSMUSG00000031487	Brf2	2700059M06Rik|5730512K07Rik|AU018504|AU022602|BRFU|TFIIIB50	BRF2, RNA polymerase III transcription initiation factor 50kDa subunit	protein-coding	3.024210773756	3.11589486571886	3.09297481943765	3.40682612109931	3.51801543299618	3.50472102897999	3.42829324623225	3.27788388720619	0.891097493461256	0.117234228187054	0.378687102556896
Merged-chr18-39737888-4	chr18	39737785	39737985	+	966.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35612.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	5.2591278635089	5.55473468952619	5.37208155817203	4.60109504505817	5.111535118531	5.21227182877354	4.70027459572965	5.03291194337976	-0.387508349795204	0.304444808056272	0.617029527125211
Merged-chr15-100463916-4	chr15	100463812	100464012	+	872.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-5099.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	4.33784447081699	4.63013523808106	4.29203877660165	3.80960866042157	4.64306150418805	4.68196766677244	4.12460312295232	4.7590955617778	0.64643195272307	0.142326994155496	0.419855489949607
Merged-chr17-69079523-4	chr17	69079418	69079618	+	963.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	3841.0	NM_001355732	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	5.20899958272743	5.53729860973072	5.00782432411969	5.14917645938286	5.32120458415615	5.21946903058332	5.18421072022114	4.8903273645421	-0.129834083636091	0.683556259188798	0.87039089396779
Merged-chr19-37696671-4	chr19	37696551	37696751	+	658.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1157.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	2.68430534985434	2.79060699753327	3.00897390395529	2.54033644262826	2.76147436310855	2.93411424463953	3.05213867080453	3.16886338767145	1.00806615773529	0.117992989413409	0.380024220035269
Merged-chr15-78826765-4	chr15	78826666	78826866	+	910.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15881.0	NM_027219	104445.0	Mm.307488	NM_027219	ENSMUSG00000049521	Cdc42ep1	1810058K22Rik|AA980734|Borg5|CEP1|MSE55	CDC42 effector protein (Rho GTPase binding) 1	protein-coding	4.38648032561904	4.23302477278867	3.96809023678194	3.85928058487674	4.57931792232162	4.34465162470746	4.24281241921792	4.07118346492245	0.531107490648563	0.215924591338655	0.522356540355985
Merged-chr2-59177463-4	chr2	59177324	59177524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	16574.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	5.02942500837134	4.83581495201806	5.21767076356304	5.30410450905435	4.96139795031917	5.02546805344687	4.90158084169068	4.92172551025342	-0.327562681118221	0.309324084263571	0.621622697166796
Merged-chr16-33380817-4	chr16	33380764	33380964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011749)	promoter-TSS (NM_011749)	89.0	NM_011749	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	6.23589993457523	6.18997635884591	5.88219299868691	5.93948014052949	6.05562937248027	6.27748325692062	5.87603671881109	5.92526916555365	-0.0355205234568805	0.886885854139976	0.957513044740158
Merged-chr5-81044077-4	chr5	81043983	81044183	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 1 of 27)	L1MA5|LINE|L1	22490.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	4.84851499538319	4.84161284302722	4.96433442217764	5.40109010979946	5.36147508179633	5.45822266714852	5.23182015575061	4.72022419334482	0.314765063424352	0.384850348884553	0.686289940705339
Merged-chr17-5599158-4	chr17	5599064	5599264	+	931.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	106564.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	5.45492990419874	4.38044296071023	5.0413587122541	5.50657937286524	4.14457368629995	4.92804654065504	5.10997409183078	4.74543803197302	-0.763660650416942	0.0907863204361227	0.329177296231612
Merged-chr2-79107893-4	chr2	79107781	79107981	+	861.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147545.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	4.21311804300666	3.95158675178078	5.01368342916206	4.72305347562907	4.33891460538424	4.49448713469875	4.93083792829419	4.57645138067715	0.127306095093576	0.782400732703299	0.91529005173258
Merged-chr10-67302539-4	chr10	67302431	67302631	+	923.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17250.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	4.4914715716421	4.53457350686564	4.71517385841657	4.64754578208719	4.25227151810165	4.06962502464934	4.25259046065265	4.6420535852193	-0.650937226259639	0.0948594341115937	0.337018204526948
Merged-chr1-154036961-4	chr1	154036854	154037054	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137025.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	4.47012875956834	4.7496280366367	4.62901199854997	4.47135776101941	4.01962351748278	4.41947102830956	4.49137656164593	4.62592678039482	-0.420632147816889	0.286722488418918	0.598423058971679
Merged-chr5-66070067-4	chr5	66069983	66070183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	28096.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	6.67138565509731	6.39873525421956	6.21263946160273	7.07622063292799	6.61576736878568	6.69142549783782	6.56247717808104	6.51019516831147	-0.0814485470439029	0.753529045191056	0.902798885097597
Merged-chr16-3872371-4	chr16	3872267	3872467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033159)	promoter-TSS (NM_001033159)	7.0	NM_001033159	71063.0	Mm.379190	NM_001033159	ENSMUSG00000039789	Zfp597	4933407K12Rik|AI462383|AI666357	zinc finger protein 597	protein-coding	5.70985296554476	5.61274711038784	5.49939533134044	5.82187137862203	5.6370728776339	5.35507404585538	6.01859596413194	5.34319770481992	-0.0881765840810937	0.765505761782724	0.908298765072472
Merged-chr16-35918801-4	chr16	35918662	35918862	+	930.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19708.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	4.11341999760972	4.60249699213984	4.21126533896777	4.01415696186542	4.4388330342768	4.42987712969849	4.04593713002113	4.34190047889791	0.186249570573807	0.658672824748159	0.857995155933081
Merged-chr2-27745291-2	chr2	27745191	27745391	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 4 of 9)	intron (NM_001290481, intron 4 of 9)	34708.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	4.13214431217225	3.95551659832463	3.69538737193005	3.888261030513	3.82551618334244	3.69294878262872	3.56220192815713	4.28419957126193	-0.14893818151285	0.761064855187407	0.90650179911268
Merged-chr10-86637103-4	chr10	86637015	86637215	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48412.0	NR_015572	66263.0	Mm.392261	NR_015572	ENSMUSG00000097412	1810014B01Rik	-	RIKEN cDNA 1810014B01 gene	pseudo	5.12610501386066	5.42726983161953	5.61286392628521	4.91845782825405	4.99884262093046	4.88470627615306	4.96391854617144	5.27821213977006	-0.461816480350691	0.176916003486614	0.472170124684143
Merged-chr6-86823977-2	chr6	86823877	86824077	+	826.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25463.0	NR_028298	67170.0	Mm.119489	NR_028298	ENSMUSG00000100164	2610306M01Rik	-	RIKEN cDNA 2610306M01 gene	ncRNA	3.37346007274471	3.26079844402315	3.49209424909172	3.87684777949683	3.20731912624114	3.21510239418534	3.53290052052632	4.10438998476559	0.136489888502925	0.825303902936628	0.933071357208396
Merged-chr2-28533308-4	chr2	28533198	28533398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145835)	promoter-TSS (NM_001145835)	-166.0	NM_001145835	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	7.6897805032278	8.0554969204298	7.34207260065836	6.83347591548572	7.78958851668923	7.86845792414655	7.37726634118405	7.32632868895959	0.0789163960851636	0.7755075311169	0.912391634160948
Merged-chr6-116440184-3	chr6	116440077	116440277	+	952.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009662, intron 3 of 13)	intron (NM_009662, intron 3 of 13)	21001.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	4.34792851248928	4.28423158313756	4.23095307078405	4.2833262363156	3.70652277850894	3.58933352088834	3.98937858878499	3.79190582867772	-1.42051323825456	0.00148617815874247	0.0185312674436863
Merged-chr17-45608626-4	chr17	45608529	45608729	+	870.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-6527.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	4.3915874728099	4.75728183503473	4.52057661238089	4.31153647076887	4.27676415244647	4.61030923662867	4.41645357654671	4.70612072029173	0.0138340860669403	0.971356606653853	0.989667458652484
Merged-chr4-43466625-4	chr4	43466524	43466724	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11998.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	5.06178274363723	4.9274307034165	5.68157389686162	5.46540280008303	4.91030751736874	5.01544062303164	4.89233980858993	5.31032042114606	-0.529881637751576	0.125501353374686	0.393301670050491
Merged-chr18-38381452-3	chr18	38381334	38381534	+	911.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37473.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	3.73986840708416	3.76564240083075	3.88401296155229	3.75133598814729	3.63654845207358	3.44017211364187	3.86680957825351	3.57672997421873	-0.437060271639796	0.358556394198322	0.664523396933873
Merged-chr9-71162708-4	chr9	71162618	71162818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271843)	promoter-TSS (NM_001271843)	-85.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	6.3767931924687	5.91664388695581	6.01873481634757	6.36530115731633	6.43026451546521	6.48192948904301	6.36240725936309	6.35588536475426	0.317963186324258	0.180905654322868	0.477320812879393
Merged-chr7-116370542-3	chr7	116370442	116370642	+	835.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011083, intron 13 of 32)	intron (NM_011083, intron 13 of 32)	-36352.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	3.47931461051894	3.45806147655097	3.6416322158966	3.92573297126649	3.45819971907537	3.26706816682012	3.67566396425571	3.63953081113812	-0.428713708002967	0.418162332801434	0.711691853246456
Merged-chr19-53311203-6	chr19	53311124	53311324	+	990.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360348)	promoter-TSS (NM_001360348)	-221.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	5.24979650315415	4.68365647030183	5.03886994322773	4.76165168126218	4.95624351575787	5.0376609077137	5.04649555377632	5.03542594039163	0.158139303423054	0.633992317918761	0.844935157053758
Merged-chr4-34643363-4	chr4	34643272	34643472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151507, intron 8 of 19)	intron (NR_151507, intron 8 of 19)	28415.0	NM_181406	109093.0	Mm.22363	NM_181406	ENSMUSG00000028292	Rars2	1500002I10Rik|PRO1992|Rarsl	arginyl-tRNA synthetase 2, mitochondrial	protein-coding	8.03160724801057	7.86759802869931	7.99939516187084	8.39380526796126	8.04308159843623	7.80821852748595	8.03992644176415	7.99404389692076	-0.156599434350494	0.400172631564822	0.698107947002665
Merged-chr8-109019731-4	chr8	109019615	109019815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-55507.0	NR_126329	628686.0	Mm.203332	NR_126329	ENSMUSG00000097393	D030068K23Rik	-	RIKEN cDNA D030068K23 gene	ncRNA	5.13775200382159	5.0287511131658	5.41643730108436	5.4309238214041	5.03210071923934	5.56148326017389	5.41644284596851	5.4930725662496	0.190046638365555	0.545544169178108	0.795945900838425
Merged-chr1-105795854-4	chr1	105795757	105795957	+	858.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	15134.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	4.47181205688009	4.36253420171426	4.33584895690419	4.88170743713832	5.04362896397924	4.46514948504752	4.40887856870525	4.5121609254114	0.210945878313897	0.612932170925781	0.832959104078625
Merged-chr19-18625240-4	chr19	18625121	18625321	+	762.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	6592.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	3.51551494868204	3.61167622090245	3.51598495845104	3.54129668946578	3.43963697664151	3.73910068616021	3.50239129230451	3.45776537530853	-0.040036847149279	0.934597664502867	0.976356212091203
Merged-chr18-56924952-4	chr18	56924962	56925162	+	912.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177115, intron 1 of 4)	CpG	486.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	4.51553849209708	4.35773732685237	4.55498764911641	4.34531590281052	4.42022627400313	4.11441946496714	4.49524704643161	4.58950446878804	-0.0436391319647803	0.908863934036844	0.966100563913989
Merged-chr1-69687592-4	chr1	69687497	69687697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCGCG)n|Simple_repeat|Simple_repeat	-1637.0	NM_011770	22779.0	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	6.47917573033628	6.07684803583358	6.71377039677171	6.66424524679886	6.07540402251629	6.07883067529963	6.16124948458957	6.10523795881126	-0.612914021905289	0.0128447195242722	0.094309033164428
Merged-chr9-25130578-4	chr9	25130459	25130659	+	854.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020586, exon 3 of 8)	exon (NM_020586, exon 3 of 8)	21222.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	4.65976015170374	4.05969128663147	4.22928048880215	4.56338254614817	4.33367892735473	4.09634754571407	4.46150234496575	4.02550961490445	-0.384530268429115	0.368422877805247	0.672824577689815
Merged-chr10-5317724-2	chr10	5317624	5317824	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347711, intron 43 of 145)	intron (NM_001347711, intron 43 of 145)	-123017.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	2.94699093833947	3.00124433380561	3.36820291546839	2.92563608301939	2.69940110807529	2.9253894109352	2.66528455919226	3.00658106359309	-1.0661511771086	0.103525711544126	0.35355803771228
Merged-chr1-184733439-4	chr1	184733325	184733525	+	914.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008250)	promoter-TSS (NM_008250)	-932.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	4.62458759414113	4.58650370505147	4.22595699730796	4.61916272197146	4.27523170031382	4.71890553248839	4.67690952084799	4.62229470172823	0.0963681631191027	0.799695306914575	0.922657550303479
Merged-chr7-97749062-4	chr7	97748949	97749149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-10802.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	5.94805415583088	5.49338373605293	5.36017319056289	5.66254598527191	6.12731747232829	5.8648291623458	5.85303780591115	6.19602583327607	0.628139981693078	0.0206735039065301	0.130918090263604
Merged-chr6-87189968-4	chr6	87189862	87190062	+	910.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054041, intron 14 of 17)	intron (NM_054041, intron 14 of 17)	85216.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	4.27640258148029	3.83218343453775	4.48459233186597	4.68897815337454	4.37718953353026	4.40473068609582	4.25813405456245	4.13181767645784	-0.173651757119929	0.695851773147678	0.876932656307051
Merged-chr17-71256976-2	chr17	71256865	71257065	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	52311.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	5.62103242790815	5.80044818455346	5.29633231984568	5.5843542914811	3.83308761112307	3.93288697802739	3.85457893861522	4.07434243536965	-4.10554501782782	1.80784342751111e-17	4.30369522832151e-15
Merged-chr6-29768988-3	chr6	29768925	29769125	+	930.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	CpG	582.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	4.18337940879819	3.97242052496539	4.26770765941831	3.98815443217257	4.0767269085427	4.06788896563257	3.93022961405009	4.22396981595826	-0.0519391393332857	0.900982871539091	0.963325736633273
Merged-chr2-145952929-3	chr2	145952833	145953033	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175280, intron 6 of 6)	intron (NM_175280, intron 6 of 6)	18149.0	NM_175280	78774.0	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding	3.76517100568464	3.61412590613665	4.06220001491988	2.69393877079218	5.97542843912166	6.1766360029138	6.03083285114176	6.05999239555734	6.75554941137198	6.68869263999109e-34	1.13355822243316e-30
Merged-chr5-65696935-4	chr5	65696839	65697039	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081321, intron 1 of 31)	CpG-11111	917.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	5.35975745469045	4.97854996198752	5.01985502727382	5.00901700310139	5.36511935052822	5.26323555217687	4.92327328785601	5.21343825148167	0.216681429398813	0.490247528776608	0.76216937207179
Merged-chr10-67049466-4	chr10	67049366	67049566	+	909.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	44391.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	4.46694121017922	4.8035043639028	4.5117934488273	4.41703591596009	4.91632852964778	4.55336092591541	4.30707621580402	5.0623313124454	0.416804734740567	0.285282578980396	0.596975707459815
Merged-chr16-18392541-4	chr16	18392446	18392646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001272032)	promoter-TSS (NM_001272032)	-17.0	NM_001272031	11877.0	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velocardiofacial syndrome	protein-coding	6.24166603394902	6.26237174480368	5.89591179156894	6.54803072831954	6.27189361647016	5.99816141883299	6.46574706231083	6.03300683639361	-0.0980077175862375	0.709164774451395	0.88337194149095
Merged-chr3-58470220-4	chr3	58470145	58470345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55525.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	5.28785378643399	5.57783549008425	5.57800424866372	5.70941531827361	5.40541907292128	5.64426375570233	5.5239254581903	5.21858303215439	-0.185298330650441	0.517810422637411	0.779085298877016
Merged-chr11-43767107-4	chr11	43767002	43767202	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-19129.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	5.01926017326189	5.21020173023259	5.29009747544184	4.86726578860034	4.80762117022609	4.76551392246627	4.99577274383247	5.0822795303478	-0.352224080320942	0.286642719031911	0.59834429449463
Merged-chr8-107057445-1	chr8	107057345	107057545	+	963.5	f1_balb.idr	promoter-TSS (NM_139229)	promoter-TSS (NM_139229)	568.0	NR_028367	66164.0	Mm.334789	NM_025391	ENSMUSG00000031917	Nip7	1110017C15Rik|6330509M23Rik|AA408773|AA410017|PEachy	NIP7, nucleolar pre-rRNA processing protein	protein-coding	2.96521220017514	2.81168924038581	2.9062088648553	3.04524864504216	2.74683400909153	2.74109901753328	2.83457477034887	3.07484251377586	-0.380712921775034	0.541895804611138	0.793491190310592
Merged-chr16-91688827-4	chr16	91688724	91688924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021720)	promoter-TSS (NM_021720)	-74.0	NR_040389	100038392.0	Mm.440384	NR_040389	ENSMUSG00000085169	Gm10785	-	predicted gene 10785	ncRNA	7.96835516757524	7.9800576659959	7.55970259131193	7.34818264488989	8.10111909159415	8.09222099222567	7.92463756581915	7.48747497033746	0.247259384144443	0.274841539415955	0.586581569311358
Merged-chr4-41468815-4	chr4	41468709	41468909	+	854.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025539, intron 1 of 2)	intron (NM_025539, intron 1 of 2)	3661.0	NM_025539	66401.0	Mm.28574	NM_025539	ENSMUSG00000028443	Nudt2	2310051L06Rik|AA939917|APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding	4.22373792728097	4.4060298497552	3.88592255506156	3.83669522556322	4.38512716610153	3.76559289405378	3.8148856252491	4.34298109659208	0.0263424575937204	0.956723306507838	0.984724224578049
Merged-chr2-154791379-4	chr2	154791265	154791465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001139511, exon 1 of 8)	5' UTR (NM_001139511, exon 1 of 8)	255.0	NM_001139511	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	6.67396734168189	7.15117673276824	6.50297283230503	6.23327691103696	7.35651840890518	7.75441695882927	6.87450005907589	7.07933095316301	0.866363940867588	0.00201623993295664	0.0235230195358008
Merged-chr11-5502566-4	chr11	5502470	5502670	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-18071.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	5.45746114456699	5.36958295647052	5.37449682262206	5.74692354542861	5.06358015768517	5.06964322478808	5.34769873225775	5.34152362919508	-0.549020579442961	0.0680434737559488	0.278439849602477
Merged-chr2-122070184-4	chr2	122070082	122070282	+	915.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145531, intron 26 of 39)	intron (NM_145531, intron 26 of 39)	41599.0	NM_001256055	100042807.0	Mm.329403	NM_001256055	ENSMUSG00000043424	Eif3j2	Eif3j-2|Gm9781|eIF3 p35|eIF3j-B	eukaryotic translation initiation factor 3, subunit J2	protein-coding	4.55575951945358	4.85797380429539	4.86969448239795	5.15904287487934	4.79705353208368	4.54743015699855	4.70064012277983	4.79511453937182	-0.370633555714032	0.300152066256061	0.612251288689364
Merged-chr2-127006819-4	chr2	127006701	127006901	+	883.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1910.0	NM_175550	108011.0	Mm.134045	NM_175550	ENSMUSG00000001998	Ap4e1	2310033A20Rik|9930028M04Rik|AV087807	adaptor-related protein complex AP-4, epsilon 1	protein-coding	4.48864720982189	4.26190964168003	4.48936106120235	4.38404694140274	4.53187847123051	4.39648504696829	4.34228945728754	4.67423948485524	0.207944373479574	0.573516167501206	0.811888602285473
Merged-chr19-37550898-2	chr19	37550798	37550998	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175353, intron 1 of 21)	CpG	480.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	3.27592357921247	3.16936266766886	3.44732009722518	3.40966978503051	3.35632618363223	3.66665548390872	3.20324862934877	3.44536731868211	0.316967145381075	0.551863491198384	0.799127076391207
Merged-chr11-75195233-5	chr11	75195115	75195315	+	915.2999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177708, intron 1 of 1)	CpG	1222.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	3.67956338294809	3.30425126391947	3.18261927979516	3.42871275494	3.32626132398546	3.70270918928182	3.3577866722045	3.36864694550964	0.109983927643597	0.837490591712272	0.938339070778508
Merged-chr14-61518837-4	chr14	61518737	61518937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1B|DNA|hAT-Tip100	26149.0	NR_045714	75349.0	Mm.233613	NR_045714	ENSMUSG00000115656	4930556J02Rik	-	RIKEN cDNA 4930556J02 gene	ncRNA	6.32948376549421	6.79756879771506	6.9631629189284	6.69946311775253	5.86127908278986	6.32877185671844	5.88417950693341	6.43345028507423	-0.851636673949074	0.00116196404966206	0.0151868231896614
Merged-chr7-45924171-4	chr7	45924084	45924284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2758.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	5.7078303116737	5.66555712023928	5.53991974233726	5.33714280945747	6.19672462436495	6.18711146994522	6.32254694409481	5.96599484392547	1.0029014026448	8.088407547551e-05	0.00169730177130641
Merged-chr13-4934831-4	chr13	4934734	4934934	+	795.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-325670.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	4.27365673828566	4.53835069042203	4.75313699520593	4.9672728655871	4.25507095591562	4.0727237061815	4.30286670878879	4.49312848671902	-0.882308691586777	0.0318954261190484	0.174342231279968
Merged-chr17-69475546-4	chr17	69475433	69475633	+	851.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145192, intron 1 of 1)	intron (NM_001145192, intron 1 of 1)	36207.0	NM_001145192	320722.0	Mm.400254	NM_001145192	ENSMUSG00000091636	Akain1	A330050F15Rik	A kinase (PRKA) anchor inhibitor 1	protein-coding	4.14168337272825	4.27192140275526	4.14230249522383	4.19059963239821	4.35546241747209	4.35857847963435	4.02866159525412	3.82522000717803	-0.051670596808859	0.90277258894262	0.963904254033634
Merged-chr2-166154498-5	chr2	166154398	166154598	+	763.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355619, intron 1 of 21)	CpG	787.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	3.13944504254967	3.12927813967065	3.08031150987758	2.95359787143859	3.14433282157381	3.19032012016029	3.18421740014305	3.07878946383656	0.32142622513533	0.560739268484217	0.804694765956414
Merged-chr7-126147375-4	chr7	126147273	126147473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 8 of 23)	PB1D10|SINE|Alu	53128.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	5.67903851792349	6.14534503591819	5.68002736487389	5.74641446820027	6.07907634329465	6.24961032561993	5.85174318163839	5.96740945832979	0.343422109489575	0.190191292560447	0.489305888356528
Merged-chr12-92928373-4	chr12	92928270	92928470	+	979.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	516453.0	NR_126436	75295.0	Mm.243878	NR_126436	ENSMUSG00000113164	4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA	5.05514914869079	4.86430071946587	5.37713435441755	5.4503457342857	5.20590183777556	5.2691568880316	5.4052750337848	5.69630753878768	0.327656160089291	0.315272947316698	0.627105605858262
Merged-chr11-26602368-2	chr11	26602265	26602465	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-8445.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	4.82545487579456	5.26818086764966	5.22471372522096	5.05703029228682	5.36100891814045	5.39826481447926	5.28837077902375	5.33981389036674	0.447380411587599	0.131593653461183	0.403904809478786
Merged-chr6-137395241-4	chr6	137395152	137395352	+	929.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 10 of 26)	intron (NM_011216, intron 10 of 26)	-15469.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	4.1129159567132	4.47841565745155	4.26059430324852	4.45739694282789	4.36117721008552	4.23863744016987	4.49109997536342	4.43095364276406	0.0845625979803748	0.827088332457962	0.933672322391225
Merged-chr11-54438072-4	chr11	54437971	54438171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173753)	promoter-TSS (NM_173753)	-108.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	7.58433429512956	7.50368415770682	7.2939739930288	7.04056836356481	7.68325854903187	7.78849087417018	7.48627670658332	7.73510203284243	0.420511218997685	0.0354157348909562	0.186813146124453
Merged-chr5-62858661-4	chr5	62858555	62858755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 7 of 8)	intron (NM_001170705, intron 7 of 8)	44832.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	7.81850419442186	7.56899118081408	7.86957520998775	7.5043436830367	7.352161086372	7.78401458055383	7.25952921530102	7.3552488568965	-0.320668417923595	0.112986034564151	0.3714828839319
Merged-chr17-56077596-3	chr17	56077453	56077653	+	769.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024432, intron 1 of 11)	intron (NM_024432, intron 1 of 11)	1780.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	3.19685900740207	2.8636713160007	2.94859692792967	2.84716069733604	3.23323722807459	3.31079975702059	3.2392201801984	3.25083870437596	1.18556442191345	0.0354421486243012	0.1868832281598
Merged-chr3-130708694-4	chr3	130708565	130708765	+	871.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025509, intron 1 of 3)	intron (NM_025509, intron 1 of 3)	779.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	3.85546567285745	3.56193842627903	4.22281678779223	3.98433251672337	3.84318033503859	3.86599434799281	4.07882219629064	4.22003073671198	0.219773723112461	0.638276321281044	0.847103786404823
Merged-chr5-101826691-4	chr5	101826597	101826797	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	61567.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	4.63302893928462	5.0189366873412	4.59000795266559	4.83459781509185	4.71473521059252	4.93169848645298	4.80981389385991	5.26179723570739	0.307114045290963	0.384551947185034	0.686058353293141
Merged-chr10-128743897-4	chr10	128743818	128744018	+	871.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_016811, exon 1 of 24)	5' UTR (NM_016811, exon 1 of 24)	158.0	NM_016811	13139.0	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	4.36729821063135	3.90615719571959	3.91072561433515	4.19533713475455	3.96741088753913	4.285444132761	4.3087460174417	4.01373883523024	0.0876640972047979	0.839332601543316	0.938895262970456
Merged-chr10-81298873-4	chr10	81298791	81298991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	L1MB7|LINE|L1	5928.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	7.97741143713952	8.0851091584754	7.65245591222497	7.83559336966912	7.71293256828733	7.82997923840607	7.73056815408074	7.72289356902553	-0.194458436724849	0.265278581924965	0.577001515467012
Merged-chr15-81132829-4	chr15	81132724	81132924	+	793.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 1 of 13)	intron (NM_001082536, intron 1 of 13)	-27777.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	3.62696185637004	3.3293785061861	3.79456197962574	3.50206170277546	3.92058524518925	3.91792692949908	3.72564035565855	4.4656864226701	1.34306014540896	0.00693896703505308	0.0605354497595346
Merged-chr5-140737408-3	chr5	140737296	140737496	+	962.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	13269.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	3.83201385153995	4.08588514598667	4.0731957416384	4.41890668700399	3.70675009870132	3.44062367734477	3.76374403153276	4.02606396423421	-1.07058243445963	0.0307256389357232	0.169986818695477
Merged-chr9-111119841-1	chr9	111119741	111119941	+	577.666687	f0_balb.idr	intron (NM_027742, intron 2 of 13)	intron (NM_027742, intron 2 of 13)	1730.0	NM_001164838	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	3.76549047749911	3.74220400768742	3.90646991543957	3.34411370645471	3.52188045734234	3.7823618560229	3.5941370092721	3.71340175781421	-0.125331147946544	0.803390759353166	0.924122552203287
Merged-chr4-44173343-4	chr4	44173237	44173437	+	817.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5054.0	NM_001038993	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	4.28297135348847	4.06184886851699	3.8804854806721	3.8295499962273	4.04187367266346	3.83175811795639	4.01211958200885	3.97940761738898	-0.11535276728156	0.793206607095196	0.91989642620941
Merged-chr7-128062654-4	chr7	128062554	128062754	+	946.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001082960)	promoter-TSS (NM_001082960)	14.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	5.59992538228809	5.42195826202801	5.01082578416002	5.50005913539816	5.24404071313763	4.75880973682704	5.36962171284434	5.27694450136421	-0.397056021238304	0.223530224766176	0.531602771975184
Merged-chr9-70656229-4	chr9	70656129	70656329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172772, intron 1 of 8)	intron (NM_172772, intron 1 of 8)	945.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	6.03189318422782	5.85624045808715	5.61132072240742	5.77254107846157	6.04921630742573	5.81450117119953	5.61065337638252	5.81209568796213	0.0294993163942854	0.911063180533195	0.966904162861598
Merged-chr9-37531051-4	chr9	37530998	37531198	+	829.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136939, intron 1 of 6)	intron (NR_136939, intron 1 of 6)	3009.0	NM_027102	69524.0	Mm.41751	NM_027102	ENSMUSG00000001946	Esam	2310008D05Rik|Esam1|W117m	endothelial cell-specific adhesion molecule	protein-coding	3.62418661495444	3.8703812052529	3.78195733305148	3.44793694240783	3.47247405647106	3.6254247711908	3.81358217958796	3.919494297827	0.0978576128422042	0.843135117673402	0.940459539910433
Merged-chr3-89299559-3	chr3	89299465	89299665	+	777.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-18614.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	3.40437406496114	3.5043242017203	3.45907302670888	3.21856841527131	3.50667042578091	3.33875176130774	3.21627209995221	3.45712377930057	-0.00993411035097933	0.984901673136368	0.99448620703011
Merged-chr10-77608800-3	chr10	77608700	77608900	+	978.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301671, intron 1 of 3)	intron (NM_001301671, intron 1 of 3)	2202.0	NM_001301671	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	4.32440651156864	4.44408601793057	4.04359256001307	4.61899329658525	3.9823366826344	3.87409769022667	4.42455319771211	4.23529045511698	-0.596987901373759	0.173342067828593	0.467381192003767
Merged-chr19-47432605-4	chr19	47432504	47432704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	31807.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	8.21912429798291	8.33615538676004	8.27224855902944	8.53914747337314	8.0203477434309	8.0557345932963	8.26667208061031	8.03233422929911	-0.331338589687702	0.0468163906958075	0.22246551751278
Merged-chr13-100681835-4	chr13	100681737	100681937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183115, exon 4 of 12)	exon (NM_183115, exon 4 of 12)	12356.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	5.52578277271296	5.57739046131242	5.49767009982727	5.59880926307445	5.63675877783671	6.00519695219268	5.63426159310429	6.03509269633171	0.461073830485597	0.0855189069632104	0.318482199483825
Merged-chr6-135364562-4	chr6	135364434	135364634	+	948.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001288628, intron 1 of 5)	intron (NM_001288628, intron 1 of 5)	1603.0	NM_001288628	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	5.9579081139834	6.07217293811844	6.76007626085595	6.85141482247009	4.73674614164427	4.70034836185957	5.10436903446941	5.08650947254665	-2.67729154555707	1.15996338198639e-14	1.78326206406931e-12
Merged-chr9-121642136-4	chr9	121642036	121642236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011703)	promoter-TSS (NM_011703)	-40.0	NM_001357346	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	5.20622280558467	5.38411810346926	5.24184344811144	5.48061070076904	5.50438022874282	5.72064179311439	5.8875094005971	5.89346526001058	0.689996801588429	0.014582675399695	0.102769979510765
Merged-chr10-80569906-4	chr10	80569811	80570011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_078477, intron 1 of 1)	intron (NM_078477, intron 1 of 1)	7385.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	6.23090069078458	6.84112921050736	6.00981957208989	6.3199766267944	6.5214286574454	6.54399936091724	6.58217177620896	6.66999199528323	0.273055430176875	0.280232230503775	0.592308919118337
Merged-chr16-32533327-4	chr16	32533200	32533400	+	981.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37019.0	NM_199309	245308.0	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	4.99125743945851	5.83579940335142	5.63221502241603	5.25680719408581	5.05201522806313	5.13328151021084	5.00505195796356	4.98874019710562	-0.773541396718277	0.0217861859181228	0.135564203817297
Merged-chr1-155494604-4	chr1	155494497	155494697	+	924.645874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32514.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	4.31039924080525	4.65066172239449	4.36027440488357	4.51162508361335	4.55557786018061	4.44147292847162	4.91124312997697	5.10456141831888	0.659774293365201	0.0854129683257659	0.318204211894677
Merged-chr4-133241571-7	chr4	133241381	133241581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016693, intron 1 of 28)	CpG	663.0	NM_016693	53608.0	Mm.36640	NM_016693	ENSMUSG00000028862	Map3k6	Ask2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding	6.13935287994044	5.84832937831797	5.65800220969838	5.53935767009377	5.94973764248526	6.25601348642216	6.05061114046591	6.07746764122454	0.449774402863853	0.0905018276448953	0.328619700583612
Merged-chr4-11965890-2	chr4	11965790	11965990	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040577)	promoter-TSS (NR_040577)	91.0	NM_001290387	381511.0	Mm.331489	NM_001033453	ENSMUSG00000049225	Pdp1	Gm1024|Ppm2c	pyruvate dehyrogenase phosphatase catalytic subunit 1	protein-coding	4.51243016709129	4.82059297871831	5.04998665286614	4.94219782171464	4.89232744972945	5.0198732479763	4.74866613677941	5.01486378265407	0.135964204882808	0.688027055831493	0.872602637190276
Merged-chr4-128769677-5	chr4	128769616	128769816	+	833.328552	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001009819)	TTS (NM_001009819)	10458.0	NM_001009819	215493.0	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	3.76390431063755	4.07190290247304	3.96795192775453	3.80008453411882	4.15716709480107	4.09056471142753	3.8029815853935	3.5221333981604	0.0566328029176081	0.905572923812351	0.964916319169902
Merged-chr11-18970049-4	chr11	18969949	18970149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010789, intron 7 of 11)	intron (NM_010789, intron 7 of 11)	48920.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	5.29835134604634	5.42900893967909	6.01781081111196	5.87376094653487	5.30926071061588	5.57269536401532	5.61863599458895	5.61766146100988	-0.284462855563598	0.351353802806702	0.658808615509455
Merged-chr6-82969579-4	chr6	82969462	82969662	+	961.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 3 of 9)	L1MCa|LINE|L1	22640.0	NM_033079	110958.0	Mm.100652	NM_033079	ENSMUSG00000030041	M1ap	D6Mm5e	meiosis 1 associated protein	protein-coding	5.0122097839807	5.76386197497416	4.9784576289598	4.80067116755467	5.10671420675395	4.92823201556382	4.76743783761228	4.5670809516074	-0.639451952444948	0.105872427805141	0.358459474801033
Merged-chr3-148961098-4	chr3	148960988	148961188	+	996.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6453.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	5.33140818535576	4.85460694299841	5.49191086688126	5.50379664562934	5.32449710983396	5.07541953232677	4.95039800339356	5.04369796260799	-0.391004943609739	0.238812978975383	0.549192230129046
Merged-chr2-173018761-4	chr2	173018667	173018867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3135.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	6.02323916869374	6.01301684349566	6.14785248930804	6.40157782672217	5.98066028310205	6.1110336898796	6.22819903803828	5.58651129559129	-0.268214352297322	0.313569723245849	0.625506012930708
Merged-chr4-26438112-3	chr4	26438013	26438213	+	964.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91461.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	4.51186342928335	4.38972263327291	4.70440662557883	5.43304933484849	4.07218118807037	4.2608641810233	4.26851400930369	4.23472313403297	-1.45825761455722	0.00116132094975214	0.0151812054880455
Merged-chr6-116338040-4	chr6	116337945	116338145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302383)	promoter-TSS (NM_001302383)	23.0	NM_001302383	71779.0	Mm.27064	NM_027920	ENSMUSG00000025702	March8	1300017E09Rik|MARCH-VIII|Mir	membrane-associated ring finger (C3HC4) 8	protein-coding	7.12097667039491	7.22651879253198	7.07517465701197	7.16204013888342	7.15462855926116	6.98690481917693	6.80389624877455	7.17359731641903	-0.145674530055112	0.449982171309854	0.734979987557322
Merged-chr14-67920114-1	chr14	67920014	67920214	+	618.0	f0_balb.idr	intron (NM_177780, intron 1 of 51)	intron (NM_177780, intron 1 of 51)	13458.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	3.62300445755167	3.5579931823459	3.30395568758612	3.31355873109484	3.46682622071349	3.28817641125987	3.35060222027249	3.36132034258031	-0.271339854822344	0.603955097602615	0.828350269166784
Merged-chr2-60021776-4	chr2	60021682	60021882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	103958.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	6.33955152346837	6.33717253216912	6.32195542590654	6.72338089044403	6.39931141051542	6.2284628607953	6.49665989427787	6.67562942349236	-0.000878625708950462	0.997059017608683	0.998855242211488
Merged-chr1-136633827-4	chr1	136633716	136633916	+	881.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8915.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	4.57282413432456	4.00041410590264	4.42282180220573	4.71974999293097	4.35153748029095	4.06339812716731	4.13806311472294	4.41999866441368	-0.510222349698394	0.236584163024742	0.546577661329488
Merged-chr11-117849188-4	chr11	117849098	117849298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009689)	promoter-TSS (NM_009689)	-39.0	NM_001012273	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	7.40180321304242	7.59818354491327	6.94378893962097	6.89848217795324	7.23229068495246	7.18707560414825	7.0960454305997	6.95232735169798	-0.158147687433702	0.494318536879661	0.765009874036427
Merged-chr4-155770223-6	chr4	155770096	155770296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_147776, exon 4 of 4)	3' UTR (NM_147776, exon 4 of 4)	4365.0	NM_147776	246228.0	Mm.26515	NM_147776	ENSMUSG00000042116	Vwa1	4932416A11Rik|WARP	von Willebrand factor A domain containing 1	protein-coding	5.02037932907545	5.53195112987903	5.38015494630705	4.89287322054374	5.12792259475095	5.60857937250111	5.32457016563616	5.48519253001898	0.306652222364065	0.350843079590047	0.658322282833594
Merged-chr16-20733079-2	chr16	20732979	20733179	+	871.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009893)	promoter-TSS (NM_009893)	-48.0	NM_001354996	12667.0	Mm.20457	NM_009893	ENSMUSG00000006958	Chrd	Chd	chordin	protein-coding	3.17700168717397	3.06361617835223	3.06169640097509	2.9805113668781	3.15617554839843	3.04192222869252	3.1650345717807	3.06019237260551	0.177292671931345	0.750804875331054	0.901855648088396
Merged-chr4-34561170-2	chr4	34561070	34561270	+	665.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007589, intron 1 of 4)	B3|SINE|B2	10555.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	3.39813588928578	2.87081126274606	3.2835708930837	2.98094046128976	3.39790509411607	3.27270819572308	3.87377775134329	3.34047265323861	1.23898472541118	0.0361529581659727	0.189034849724218
Merged-chr1-120197386-4	chr1	120197275	120197475	+	872.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67905.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	4.24867582098296	4.46845682131924	4.20190477923126	4.13542616661035	4.45283617840896	4.27869333035876	4.40284137100103	4.49898234393732	0.361109077423957	0.344346221688795	0.652873698671171
Merged-chr18-34410945-2	chr18	34410844	34411044	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_016927, intron 2 of 14)	B3|SINE|B2	1521.0	NM_016927	53871.0	Mm.445792	NM_016927	ENSMUSG00000014503	Pkd2l2	TRPP5	polycystic kidney disease 2-like 2	protein-coding	5.63567202824554	5.91297435228356	5.2578329717549	5.81814549815615	3.5028769135392	3.89467809032179	3.81500182542042	3.828121140532	-5.6987157104239	6.25126231144999e-16	1.1771391536156e-13
Merged-chr8-84663604-2	chr8	84663504	84663704	+	994.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010499)	promoter-TSS (NM_010499)	-752.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	3.60327409721305	3.41870562155429	3.23135648931847	3.20815488420938	3.76884919634835	3.87844120577557	3.83189903688338	3.75460310640872	1.42871982521992	0.00343266693046026	0.0354775373084407
Merged-chr10-91138475-4	chr10	91138380	91138580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-14517.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	7.08686978674389	7.07411350924999	6.87804645046471	7.0506877298215	7.32700681108652	7.2652523533097	7.63766107234194	7.09514182498874	0.435133061406339	0.0297414446468727	0.166297430362903
Merged-chr16-30604688-4	chr16	30604592	30604792	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4969.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	4.9880803255806	5.72369222008708	4.79054939677819	4.82686868534747	5.32041056313401	5.42739515072746	5.13546598530208	5.02180905215167	0.173581363524579	0.640268353643446	0.84803984264955
Merged-chr6-106769110-4	chr6	106769023	106769223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027296)	promoter-TSS (NM_027296)	-15.0	NM_001242358	70047.0	Mm.196332	NM_027296	ENSMUSG00000013736	Trnt1	2410043H24Rik|2610044E04Rik|9830143O18Rik|AA408384|C76540|CGI-47|mt-Trat	tRNA nucleotidyl transferase, CCA-adding, 1	protein-coding	7.37103307501906	7.64374718996085	7.32971645459519	7.29813123952305	7.91485750331179	8.06540754700439	7.69578589581192	7.56962740202462	0.540772250440591	0.00540173572865749	0.0502798675859961
Merged-chr18-25681505-7	chr18	25681294	25681494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 1 of 12)	intron (NM_001362322, intron 1 of 12)	-1646.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	6.39530886402379	6.0114753443751	6.47769449481203	6.71285519825125	5.95731049296797	5.93202647052814	6.20269114853916	6.26791622975112	-0.521743922827616	0.0459284341136881	0.219951558351491
Merged-chr1-75398894-4	chr1	75398795	75398995	+	972.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085370, intron 4 of 38)	intron (NM_001085370, intron 4 of 38)	-1190.0	NM_001173477	11790.0	Mm.275397	NM_007463	ENSMUSG00000026207	Speg	AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297	SPEG complex locus	protein-coding	5.28042000347697	5.37323416902957	5.01857392141381	5.36605733661252	4.97189937110356	5.29831582433032	4.99458117854982	5.39093501508494	-0.199920533458035	0.52122755641089	0.781255988729258
Merged-chr18-25621499-3	chr18	25621405	25621605	+	776.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	58243.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	3.28465098295783	3.5024468805617	3.28509305737662	3.36655037508504	3.0630208410264	3.00885490840454	3.03266065529293	3.28330518721891	-1.02814553221708	0.0696786236895895	0.28246672869101
Merged-chr9-25482005-3	chr9	25481911	25482111	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 1 of 7)	intron (NM_026189, intron 1 of 7)	414.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	4.91978872063476	5.21746649757736	5.35224986509603	4.80257843890495	5.0243359711633	4.81506563747512	4.82215565972616	5.1814504256759	-0.205944460173532	0.546333306213502	0.796350145922542
Merged-chr13-95618566-4	chr13	95618474	95618674	+	951.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010169)	promoter-TSS (NM_010169)	-108.0	NM_010169	14062.0	Mm.24816	NM_010169	ENSMUSG00000048376	F2r	AI482343|Cf2r|Par1|ThrR	coagulation factor II (thrombin) receptor	protein-coding	4.61942062970737	4.55051784449851	4.58121679299053	4.75566474444415	4.01146074774874	4.67346236413718	4.25143463583102	4.82827386674543	-0.358776558482368	0.384562573649717	0.686058353293141
Merged-chr7-126630134-4	chr7	126630013	126630213	+	828.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4643.0	NM_019738	56312.0	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	3.54905702166758	3.59228496613988	3.83435721507121	3.72203521163122	3.90622634326923	3.84797357931878	4.27922750899256	4.02199924922228	0.963371735637899	0.0344315489125696	0.183498294403099
Merged-chr10-99250847-3	chr10	99250715	99250915	+	883.488892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12416.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	3.519426572837	3.06241896648766	3.12055440448319	3.28813350458604	2.8869274849802	2.97011252562458	2.85395769952448	2.99612605351357	-1.41023812351219	0.0218348430161486	0.135783880049488
Merged-chr12-72084374-4	chr12	72084267	72084467	+	950.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026038, intron 1 of 4)	intron (NM_026038, intron 1 of 4)	946.0	NM_026038	67217.0	Mm.286120	NM_026038	ENSMUSG00000019718	L3hypdh	2810055F11Rik	L-3-hydroxyproline dehydratase (trans-)	protein-coding	4.3166702165797	4.56315116962669	4.54627423244274	4.86201663669806	4.38391174557083	4.34255201382908	4.85328757258637	5.05392039823293	0.194075175822713	0.635822219472765	0.845885426792793
Merged-chr18-15195263-2	chr18	15195163	15195363	+	751.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43817.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	2.60605550518188	2.47339397472908	2.60633082585616	2.67350192837924	2.65795798648965	2.77821125707602	2.84119015766631	2.79401195118829	0.826283120471671	0.202467797534622	0.50494183017091
Merged-chr11-69996285-4	chr11	69996190	69996390	+	870.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291126)	promoter-TSS (NM_001291126)	524.0	NM_030064	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	3.97488671861882	3.59588535061879	3.24654343391989	3.52926028636888	3.9584072498601	4.00934066259477	3.50304158897967	3.83738142216908	0.691155246837461	0.187743124242462	0.486148389337764
Merged-chr19-34522250-6	chr19	34522153	34522353	+	873.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	5221.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	4.00475803046519	4.01098761532617	4.05328336591104	3.82600031811569	3.93980722032634	4.12893835152627	3.93911766777114	4.30525494369193	0.31091297468789	0.465019992723044	0.745722932051402
Merged-chr1-156471278-4	chr1	156471183	156471383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	3045.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	6.43189648085278	6.58857220989171	6.39705528936411	6.71384366172068	6.79637033529001	6.39928449450162	6.54971989309502	6.54676410734341	0.0561261275351535	0.801299254073838	0.923340719847852
Merged-chr5-43818894-4	chr5	43818830	43819030	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009763)	promoter-TSS (NM_009763)	37.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	4.86252189930463	4.73889078415838	5.11543775595298	5.01681333352808	4.36123096378609	4.68140856907328	4.69331147010009	4.7123065313607	-0.705170667841762	0.0443230088717313	0.21472794113475
Merged-chr18-77946957-4	chr18	77946863	77947063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 1 of 43)	MTE-int|LTR|ERVL-MaLR	8496.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	5.91156406514157	5.96451285595867	5.76113438133156	5.36138773569817	6.41193207045899	6.55848180148653	6.35131910758659	6.22287895631255	0.999094689216546	0.000133837167386706	0.0025936280254338
Merged-chr2-180920471-2	chr2	180920357	180920557	+	993.5	f0_c57.idr|f1_balb.idr	intron (NM_173761, intron 1 of 4)	CpG	479.0	NM_173761	228994.0	Mm.30205	NM_173761	ENSMUSG00000038848	Ythdf1	2210410K23Rik|8030473O16	YTH domain family 1	protein-coding	4.30320823763426	3.95138048678224	4.06116337783307	3.80019963551026	4.71698760880863	4.18846994295266	4.48646260677071	4.71311822305538	1.27138455927773	0.0020493362659638	0.02381935108998
Merged-chr10-43757289-4	chr10	43757152	43757352	+	947.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040581, intron 1 of 3)	intron (NR_040581, intron 1 of 3)	11094.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	3.71089759058972	4.00321795126753	3.65316080431015	4.17027250648901	3.93923559813382	3.70915603652095	3.99709288836423	4.01226268305577	0.00481446233259683	0.991880384287669	0.996882127784068
Merged-chr14-77909092-4	chr14	77908989	77909189	+	909.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 1 of 11)	MTD|LTR|ERVL-MaLR	4850.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	4.71944959197162	4.61515102110238	4.7202154740139	4.60865458851112	4.87832429193112	4.73386393039849	4.69806061391786	4.71711791869906	0.222515302111051	0.505395501532769	0.771470037762552
Merged-chr10-118083207-4	chr10	118083103	118083303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58584.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	8.33745872063166	8.36566217913322	8.40416360449898	8.55449593581377	7.69953521555981	7.02842479640118	7.76053733819208	7.69392768762401	-1.07942468369717	8.85615623228951e-08	3.82282059762429e-06
Merged-chr11-102438410-4	chr11	102438265	102438465	+	839.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_199200, exon 8 of 8)	exon (NM_199200, exon 8 of 8)	8043.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	3.34655587993059	3.51890121806587	3.3469634044919	3.49031721640059	3.75017004297979	3.51989585732947	3.14346090976975	3.61600601487444	0.333175882781165	0.533390925399997	0.788683474267955
Merged-chr16-44119922-4	chr16	44119821	44120021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	19338.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	7.6386472157312	7.61125419116786	7.45201024141142	7.65067450601013	7.46785465131878	7.44235402133179	7.48990934551798	7.47548676977684	-0.166904641809777	0.322096118898141	0.633560664104514
Merged-chr16-38456803-4	chr16	38456739	38456939	+	899.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2094.0	NM_001359898	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	4.27554679313139	4.19569578012181	4.92850905295172	4.77886756369149	4.6754375380446	4.54861017094627	4.52519693877073	4.41542207847348	-0.0921551013367825	0.820251115652988	0.931216561407907
Merged-chr18-4873220-4	chr18	4873133	4873333	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	60747.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	5.57834174668468	5.19711234375955	5.48042657406877	5.88352559443479	4.70065279555039	4.56385108593501	5.19844477945091	5.15633459832657	-1.18252027661862	0.000833631937387692	0.0116278831415478
Merged-chr18-38542738-4	chr18	38542637	38542837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58531.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	5.65036133745444	6.58184328935005	5.65138000584991	4.88751953705926	5.42502501733211	5.92390059553092	5.34478233255606	4.35368388159365	-0.783489359989409	0.362964027831921	0.668158239901494
Merged-chr19-16067402-3	chr19	16067303	16067503	+	846.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65428.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	2.89837675569295	2.94093777302204	3.37783213220893	2.97234236416996	3.03104646239374	3.14722270207932	3.31245037763438	3.42472234652257	0.686162426949108	0.245228083101362	0.556284046546467
Merged-chr4-15986683-4	chr4	15986584	15986784	+	859.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013752, intron 13 of 15)	intron (NM_013752, intron 13 of 15)	27154.0	NM_001355615	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	4.01357545457198	3.98103755310682	3.80408719483386	4.0739077109712	4.30036146142252	4.23181154848665	3.89760580514539	4.01178978250192	0.384842332985023	0.369576251169595	0.673760732747822
Merged-chr16-21998155-3	chr16	21998071	21998271	+	805.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2629.0	NM_001289581	239759.0	Mm.33192	NM_153404	ENSMUSG00000044626	Liph	C130037N08Rik|D16Wsu119e|H06|Lpdlr|P3|PLA1B|lpd1|lpd2|mPA-PLA1	lipase, member H	protein-coding	4.0231773826123	4.26946269121666	4.24766010582039	3.81193001880804	3.81611108487037	4.09748070200369	4.05406066083458	4.11554144975644	-0.186744108175449	0.67245054020799	0.865211348339049
Merged-chr1-157139502-3	chr1	157139368	157139568	+	877.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177644, exon 18 of 18)	3' UTR (NM_177644, exon 18 of 18)	-30788.0	NM_001305063	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	3.77559691758934	3.75634093593935	3.68692337903454	3.48069938102086	3.11430603907276	3.36438394711275	3.17326578893445	3.03934161585987	-1.86530403008749	0.00116631177892352	0.0152268719941301
Merged-chr10-61492269-4	chr10	61492183	61492383	+	952.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153542, intron 2 of 4)	intron (NM_153542, intron 2 of 4)	16450.0	NM_153542	216011.0	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	4.87451305146647	4.65613808333134	4.47887324240043	4.49818337270366	4.82322605404777	5.14317234258612	4.85157337002512	4.52159458892419	0.466207033512955	0.195322705423108	0.496106010894639
Merged-chr13-57022947-4	chr13	57022812	57023012	+	813.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127123.0	NM_001302373	26946.0	Mm.62409	NM_012035	ENSMUSG00000021541	Trpc7	TRP7|Trrp8	transient receptor potential cation channel, subfamily C, member 7	protein-coding	3.31222194768653	3.66358125256263	3.58581197556758	3.48814653996071	3.96239637803323	3.9379949492264	4.07626600536565	4.48665644655481	1.74771987974425	0.000284045561530687	0.00485311546428055
Merged-chr2-75846446-4	chr2	75846347	75846547	+	657.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172666, intron 1 of 19)	B1_Mus1|SINE|Alu	14270.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	3.47596567475049	3.65385149086343	3.47643705620611	3.11742841494576	3.72293308990841	3.59297398351446	3.61875659757167	3.22949833008312	0.395898752710458	0.466758439791363	0.746491290418458
Merged-chr5-20882319-4	chr5	20882227	20882427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177601)	promoter-TSS (NM_177601)	-126.0	NM_177601	212090.0	Mm.347525	NM_177601	ENSMUSG00000045435	Tmem60	BC027828	transmembrane protein 60	protein-coding	9.71249177272697	9.85435837056916	9.72477677127607	9.73265757817543	9.56702426819815	9.70081428311898	9.66665471956062	9.60818191565649	-0.149305420917949	0.252842204151856	0.564082596750508
Merged-chr11-86746253-4	chr11	86746131	86746331	+	992.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	11336.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	5.47834034786343	5.47436539564291	5.53230057237019	5.28554513719996	5.82931830351956	5.24648605721695	5.07963112084261	5.20516819945785	-0.0754170872698195	0.815297188432278	0.928718235748118
Merged-chr12-85341340-4	chr12	85341234	85341434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026775, exon 5 of 5)	3' UTR (NM_026775, exon 5 of 5)	-1972.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	5.75620131548555	5.80592841944232	5.4568796508984	5.47004350162713	5.9645693223581	5.97907141909046	5.4894123179956	5.95470068344234	0.396933724044553	0.149910830716939	0.432360854406563
Merged-chr11-80209023-4	chr11	80208914	80209114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021536)	promoter-TSS (NM_021536)	-41.0	NM_001163354	59040.0	Mm.489674	NM_021536	ENSMUSG00000017686	Rhot1	2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1	ras homolog family member T1	protein-coding	6.90867479265533	7.00965537886435	6.97406752063772	6.49899886430704	7.01453753942979	6.94780072367409	6.83488672502816	7.07690785973907	0.174909805628607	0.419986853334485	0.713024000226477
Merged-chr17-24352783-3	chr17	24352675	24352875	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039581, intron 1 of 31)	intron (NM_001039581, intron 1 of 31)	752.0	NM_001039581	27410.0	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	4.63216402700452	5.04433315609574	4.95867718956476	5.04806138911874	3.83257845494575	3.97224504815332	3.95485877646385	3.90626128191318	-2.58204938085839	1.80703133867504e-09	1.10595600735641e-07
Merged-chr5-146303667-3	chr5	146303571	146303771	+	639.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001359990)	TTS (NM_001359990)	72421.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	3.09298996335918	3.86982688203393	3.48185827616014	3.36885762087131	3.40670792543967	3.41623725127109	3.8892757323432	3.42256735163942	0.214102694247981	0.71006560962437	0.883983559728082
Merged-chr11-103320422-4	chr11	103320342	103320542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24260.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	6.15153741518085	6.73027996175061	6.00217018692963	5.74984752909357	6.47700448999518	6.3086369085655	6.23648729146014	5.80115574581628	0.0396093748305517	0.897469937108028	0.961730314099217
Merged-chr14-26971659-4	chr14	26971551	26971751	+	910.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1100.0	NM_145221	72993.0	Mm.202322	NM_145221	ENSMUSG00000040760	Appl1	2900057D21Rik|7330406P05Rik|AI585782|AW209077|BB022931|C88264|DIP13	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	protein-coding	4.66529632085699	5.32969901321691	4.78604197594622	4.51761793018194	5.00211629363129	5.13592440464789	4.55875324388371	4.66302579903386	0.00721736632418109	0.985388895460074	0.994679311230532
Merged-chr15-31315829-4	chr15	31315739	31315939	+	968.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357922, intron 1 of 2)	intron (NM_001357922, intron 1 of 2)	51920.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	4.92519539034157	4.96047067072227	4.17380028521239	4.92474322720815	4.76297610988785	4.24522975840769	4.93250271161741	4.22652911717243	-0.428483622458407	0.331565907379559	0.642627926701357
Merged-chr5-103937688-3	chr5	103937600	103937800	+	760.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-26441.0	NM_001359986	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	2.80564649370176	3.16866688980165	3.0741273366561	3.09861993908798	3.1383081414145	3.18366722105997	3.1776765728691	3.18841448318499	0.480715836542847	0.400418918145388	0.698221905307951
Merged-chr7-114562804-8	chr7	114562710	114562910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177382, exon 1 of 5)	exon (NM_177382, exon 1 of 5)	162.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	6.4106054093749	6.17616841982695	7.34030900411101	6.35146818851814	6.60063746451949	7.01538605798457	6.98991841796303	6.84738141025049	0.30923438559174	0.29945649260329	0.611656728851284
Merged-chr19-5802580-4	chr19	5802480	5802680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002847)	promoter-TSS (NR_002847)	92.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	5.96277636148499	6.23581375631057	5.8703627707827	5.41909912621015	6.41606589929622	6.43739026387274	6.0197957385857	5.79135271296453	0.474633450741035	0.115002284240797	0.375320334120313
Merged-chr1-184618235-4	chr1	184618135	184618335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60544.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	7.49180699055469	7.50391858996134	7.53733262910456	7.44376934639717	7.30099573924826	7.14082488194751	7.10600356876543	7.10055853465505	-0.431263640640733	0.0149971075768907	0.104778084041569
Merged-chr16-95839704-4	chr16	95839618	95839818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040485, intron 3 of 3)	MLT1A1|LTR|ERVL-MaLR	58995.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	6.35748009221119	6.20292653780409	6.52745387411971	6.59492786946319	6.2379837706855	6.25441984466403	6.66970776415169	6.2407477396814	-0.112424033612744	0.638515149282077	0.847180399776876
Merged-chr8-125756765-4	chr8	125756655	125756855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 32 of 33)	intron (NM_175561, intron 32 of 33)	22552.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	5.82402375127386	5.52924915432304	5.5856981486075	5.61804535781848	5.516101866679	5.36625483508094	5.70553181787278	5.41300505611236	-0.22342989607381	0.411713677940278	0.707123186245418
Merged-chr15-55547324-4	chr15	55547230	55547430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026759, intron 3 of 6)	B3|SINE|B2	9982.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	5.77681955457963	5.66715549696459	5.31032886752952	5.83589087227887	5.49366143346135	5.83113208692558	5.57738627224921	5.43295494465144	-0.149666713824918	0.598879077819675	0.826116548064469
Merged-chr15-86362880-3	chr15	86362780	86362980	+	754.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358062, intron 6 of 9)	intron (NM_001358062, intron 6 of 9)	85205.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	3.17672571809422	3.51206418408347	3.17711431381115	3.478446518461	2.9566353857617	3.34901421996926	2.97203835567061	3.29185996268635	-0.769728151596324	0.192379436691583	0.491965794505647
Merged-chr15-85879287-4	chr15	85879195	85879395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028063)	promoter-TSS (NM_028063)	-32.0	NM_028063	72026.0	Mm.158211	NM_028063	ENSMUSG00000022386	Trmu	1110005N20Rik|1600025P05Rik|AI314320|Trmt1	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	protein-coding	7.0026752062213	7.10196304318324	7.42569136778582	7.60422057415593	7.33538815467461	7.25816195725135	7.44397382362037	7.08802941243852	-0.039989971185968	0.853081140703401	0.944678751070911
Merged-chr2-156515891-2	chr2	156515792	156515992	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291122, intron 14 of 20)	intron (NM_001291122, intron 14 of 20)	-31684.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	3.47499880495969	3.58667177230578	3.36750144594428	3.01236855973114	3.20423897468419	3.2327728790299	3.51090165723046	3.30817551359498	-0.186842848551885	0.741908226052034	0.898417179766546
Merged-chr2-158615591-2	chr2	158615491	158615691	+	710.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009508, exon 2 of 2)	3' UTR (NM_009508, exon 2 of 2)	4833.0	NM_009508	22348.0	Mm.143404	NM_009508	ENSMUSG00000037771	Slc32a1	R75019|VGAT|Viaat	solute carrier family 32 (GABA vesicular transporter), member 1	protein-coding	2.72880263316507	2.52672270756533	2.72909491892687	2.98640468389662	2.65978755555118	3.1999147910522	2.96650546200982	2.85834013078859	0.750354205923745	0.277321851524646	0.589486822720886
Merged-chr11-72461796-4	chr11	72461679	72461879	+	922.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153060, intron 3 of 12)	L1ME3Cz|LINE|L1	13248.0	NM_001276383	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	4.51698526418051	3.88289738501664	4.04681636213543	3.64047522197573	4.25265149993639	4.01920558205017	3.7696312533781	3.99591650995323	-0.0746619155862436	0.879638812832492	0.954928715033537
Merged-chr4-127169146-3	chr4	127169045	127169245	+	931.0277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198618)	promoter-TSS (NM_198618)	-59.0	NM_198618	242667.0	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	DLG associated protein 3	protein-coding	3.72820659899325	4.30524320292695	3.98808341970862	3.98668311497979	3.74268403897552	3.95961008050726	3.77007549712766	3.93786073278902	-0.472270289258522	0.300450937743072	0.612432455247845
Merged-chr2-180115876-4	chr2	180115773	180115973	+	996.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3493.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	5.47067904797878	5.53983852920669	5.67945146607568	5.97760368602982	5.15750682025454	5.18186395899413	5.44419827983045	5.52299273317455	-0.640351665376992	0.032321140208527	0.175993454628423
Merged-chr13-43777544-4	chr13	43777426	43777626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-7586.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	7.24279077517311	6.9265027303347	6.69583461764082	6.82324463654487	6.80854095396599	6.7107295867248	6.69179523076649	6.5793054642192	-0.322073207589593	0.136571239912944	0.411042630338623
Merged-chr5-117884579-4	chr5	117884471	117884671	+	887.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 2 of 27)	ORR1E|LTR|ERVL-MaLR	17732.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	4.77862583766369	5.1659066528255	5.35501485378534	5.11092143318775	4.23747968681668	4.45876175635068	4.71802386482359	4.73732710686786	-1.19652047828436	0.00117845798886576	0.0153432341667233
Merged-chr10-84438208-4	chr10	84438114	84438314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 1 of 6)	intron (NM_001004363, intron 1 of 6)	2257.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	5.53018194166082	5.5124023002836	5.41369789989805	5.76460371841554	5.68666386340287	5.70638322548641	5.6604132523864	5.78042208255554	0.212893047369791	0.425517043334273	0.716992238586874
Merged-chr7-136894477-4	chr7	136894381	136894581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008598)	promoter-TSS (NM_008598)	-130.0	NM_008598	17314.0	Mm.440219	NM_008598	ENSMUSG00000054612	Mgmt	AGT|AI267024|Agat	O-6-methylguanine-DNA methyltransferase	protein-coding	8.42160501145736	8.43008968251516	8.26895225360193	8.58723667238301	8.36308227051027	8.61605405927873	8.77109844957415	8.24598639558433	0.0973387226915537	0.588394063486335	0.819675135431917
Merged-chr8-18954155-4	chr8	18954055	18954255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3180.0	NM_001113350	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	7.50916586649389	7.54680881345411	7.71685399861738	7.83388672315644	7.39549893757068	7.51790188655725	7.81368698261999	7.53298387079423	-0.125920956992512	0.50545301371577	0.771472929415135
Merged-chr4-120016898-4	chr4	120016792	120016992	+	943.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-144314.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	4.5741284411562	4.45209958984376	4.44778383738165	4.65496232181588	4.68257898807637	4.5779658853537	4.7391061140186	4.61156382680352	0.241409591740388	0.490304903010236	0.762174753407996
Merged-chr8-35380130-4	chr8	35380026	35380226	+	982.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177741, intron 1 of 1)	intron (NM_177741, intron 1 of 1)	4385.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	4.99326131837873	5.19598457679775	5.28843370052769	5.91295704703287	4.77075047017691	5.01845033054906	5.10808568576295	5.02693197545633	-0.817529417932765	0.0234932882567997	0.142314318442742
Merged-chr5-114923125-4	chr5	114923048	114923248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145209)	promoter-TSS (NM_145209)	-92.0	NM_001359946	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	6.94490728343793	7.79609292870526	7.03530063991547	6.88733599786529	7.34339102388065	7.37361413557477	6.39936273081434	6.4856551538674	-0.332390164334394	0.471827573014041	0.750133229536227
Merged-chr1-39650936-4	chr1	39650820	39651020	+	968.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_170597, exon 1 of 4)	exon (NM_170597, exon 1 of 4)	262.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	4.87812610755185	5.07265052436674	5.14959390284233	5.11591812762277	4.80770771564612	4.76546037661077	5.12414659043472	5.1460361219413	-0.184729809820922	0.56700536646479	0.808119800518362
Merged-chr7-113134033-1	chr7	113133933	113134133	+	570.0	f0_balb.idr	intron (NR_045978, intron 2 of 5)	intron (NR_045978, intron 2 of 5)	7982.0	NR_045978	75239.0	Mm.381688	NR_045978	ENSMUSG00000110009	4930543E12Rik	4930545H14Rik	RIKEN cDNA 4930543E12 gene	ncRNA	3.23230514479197	3.47548766813324	3.49944010697207	3.09734451139072	2.98649794361926	3.15372506050362	3.53022890131482	2.89716888789154	-0.631091885278476	0.305096085116478	0.617575766195705
Merged-chr17-47738555-5	chr17	47738550	47738750	+	865.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	719.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	3.95396824629836	3.70961752978287	3.95457442302333	3.6138579917568	3.88371805977271	3.70698389403014	3.74354793384092	3.9059745039544	0.03949562047854	0.931624116406643	0.975349664377662
Merged-chr7-58686805-4	chr7	58686697	58686897	+	969.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009728, intron 1 of 20)	MTD|LTR|ERVL-MaLR	28595.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	4.83381886828147	4.99681935373236	5.13307270309195	4.76051230373275	6.17013284037227	5.76383712093654	6.53900010386378	6.32241308040152	2.20018659855111	7.14861187413193e-14	9.63695160206130e-12
Merged-chr3-84480432-3	chr3	84480316	84480516	+	748.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205355)	promoter-TSS (NM_001205355)	23.0	NM_001033301	229474.0	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	3.04323865721346	2.83228823766232	2.98688141834065	2.94584284521933	3.00077415717398	2.83599393470999	2.65220371398668	3.0419680868439	-0.249258342932294	0.689950506784078	0.873656641328967
Merged-chr2-27764345-5	chr2	27764248	27764448	+	989.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53765.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	4.66156731829267	4.27127654007846	4.49937654370355	4.41611185426655	4.57704319634258	4.75696777410144	4.91165642811062	4.76895185171152	0.634406959752013	0.074935846286771	0.29532465549228
Merged-chr17-86753565-4	chr17	86753460	86753660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010137)	promoter-TSS (NM_010137)	-304.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	7.729118981004	7.53718518901301	7.79091148105623	7.51089863270842	7.42592851165156	7.59039869055497	7.58763413475031	7.37790998915802	-0.190445435773801	0.287090290700961	0.598769333151773
Merged-chr4-35018532-3	chr4	35018444	35018644	+	671.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 2 of 3)	B1_Mur2|SINE|Alu	-107063.0	NR_040652	73696.0	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	3.35978143575159	3.08583898000985	3.15283075716603	3.18461655109792	2.65006144418462	2.94378869308945	3.02402488158051	3.03338045787716	-1.22042474114899	0.0528704927168573	0.239824038290287
Merged-chr10-121377132-4	chr10	121377048	121377248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 5 of 13)	intron (NM_029364, intron 5 of 13)	12058.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	7.05331291921026	7.20007449986818	6.67064702864341	6.82209324288794	7.08941076666694	7.29956485598322	6.50210819408121	6.83084493432887	0.0200206222816887	0.934869321104984	0.97635719558922
Merged-chr11-108235539-3	chr11	108235442	108235642	+	946.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	108346.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	4.07628980264779	4.27395703316098	4.21076231309908	4.03384480317933	3.76001599919688	3.99578533806772	3.85833933314547	4.28989473340834	-0.432496037105375	0.324617177143066	0.636161998108012
Merged-chr5-123973636-3	chr5	123973543	123973743	+	719.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145070)	promoter-TSS (NM_145070)	15.0	NM_145070	29816.0	Mm.149954	NM_145070	ENSMUSG00000000915	Hip1r	AA410023|mKIAA0655	huntingtin interacting protein 1 related	protein-coding	3.1223065688772	3.32986137584772	3.48273397346477	3.05055195796306	2.71676065766529	2.97051077507971	2.92206671509622	3.12105115698306	-1.34271931826147	0.0343080498057267	0.183071486675571
Merged-chr5-149267110-4	chr5	149267013	149267213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009663, intron 1 of 4)	intron (NM_009663, intron 1 of 4)	2109.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	6.66101165466598	6.67484353738783	6.7528045863543	6.84554120028531	6.87279143163636	6.85457668606276	6.64374110501211	7.10101191011191	0.190528210784358	0.357373794414563	0.663494847536382
Merged-chr19-44407534-3	chr19	44407427	44407627	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009127, exon 1 of 6)	5' UTR (NM_009127, exon 1 of 6)	182.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	3.85912010017198	3.7518943462826	3.95347670800064	3.66072603636434	3.83369119478076	4.0740497302876	3.74317723422564	3.58895245384529	0.0580104630434151	0.900669606835153	0.963186976140257
Merged-chr1-134803791-4	chr1	134803675	134803875	+	965.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015606)	promoter-TSS (NR_015606)	-54.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	4.83412762788647	4.83540984630312	5.24817917203709	5.55196978061637	5.31387863054503	4.9282163012997	5.45967440640296	4.98330556989956	0.0401733853238698	0.912484586775298	0.967207481621882
Merged-chr17-27635332-4	chr17	27635222	27635422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025963)	promoter-TSS (NM_025963)	-80.0	NM_025963	67097.0	Mm.275810	NM_025963	ENSMUSG00000052146	Rps10	2210402A09Rik	ribosomal protein S10	protein-coding	7.20758922947913	7.20374409005014	6.4449546108342	6.64951773718143	7.25600211048394	6.96159219575165	7.17265960355725	7.12733282887456	0.307305818995771	0.203724928874914	0.506742266997048
Merged-chr9-4310932-4	chr9	4310834	4311034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164574, intron 1 of 2)	L2|LINE|L2	1118.0	NM_026962	69149.0	Mm.25946	NM_026962	ENSMUSG00000025893	Kbtbd3	2200003A07Rik|Bklhd3	kelch repeat and BTB (POZ) domain containing 3	protein-coding	6.4746283003853	7.08134984202408	7.03069067817241	7.34319661317378	7.27734735364073	7.0490406712315	7.33095408247753	7.24267476018623	0.2670767751856	0.253513675187121	0.564837070339753
Merged-chr15-100678742-4	chr15	100678650	100678850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 6 of 7)	intron (NM_033612, intron 6 of 7)	9170.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	6.33360513490882	6.26014486866268	6.37133051948549	6.44279791336036	6.52299061499568	6.47342584258049	6.50648632211049	6.47053560652787	0.198501945011526	0.34585120559119	0.654194604378828
Merged-chr15-66578535-3	chr15	66578467	66578667	+	665.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081409, intron 1 of 20)	intron (NM_001081409, intron 1 of 20)	995.0	NM_001081409	239510.0	Mm.267473	NM_178718	ENSMUSG00000072501	Phf20l1	CGI-72|E130113K22Rik	PHD finger protein 20-like 1	protein-coding	2.94091159378888	3.03973829589621	3.00086477502463	2.82032225252791	2.88612513770125	2.91965577908135	2.93082831599301	2.93981209081594	-0.123562496346513	0.834663043546917	0.93698515561029
Merged-chr16-4464855-4	chr16	4464716	4464916	+	920.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44318.0	NM_009624	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	4.75599930506637	4.26525685296602	4.49278089104799	4.81013027555112	4.42879396614332	4.34115520510814	4.29461094887584	4.78707550937608	-0.292587191933551	0.461568511890563	0.743302830494533
Merged-chr11-20740614-4	chr11	20740506	20740706	+	958.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181411, intron 1 of 8)	intron (NM_181411, intron 1 of 8)	950.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	4.14780675152293	4.38720815681625	4.38760926722656	4.14063693248012	4.51697490580023	4.22191030644421	4.80231768821739	4.72713538991083	0.743190095057364	0.0557981489074304	0.247287998646499
Merged-chr3-83947673-4	chr3	83947579	83947779	+	962.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172681, intron 7 of 34)	intron (NM_172681, intron 7 of 34)	92482.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	4.94687209041511	4.82280140796352	5.34256519300071	5.22362601824048	4.93233282956851	4.66499344826362	5.14989947081907	4.90824290574666	-0.345863506386577	0.307569614893229	0.61988554006527
Merged-chr2-71103486-3	chr2	71103384	71103584	+	883.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14570.0	NM_028593	73649.0	Mm.45435	NM_028593	ENSMUSG00000027015	Cybrd1	2210407P13Rik|Dcytb	cytochrome b reductase 1	protein-coding	4.27975636801557	3.94176056447698	4.39456120095995	4.34162619246945	3.83772434385189	4.03665269166746	3.53949001567598	3.96322552391862	-1.07409817202159	0.0196738619440793	0.126581019553252
Merged-chr8-123236271-4	chr8	123236162	123236362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357300)	promoter-TSS (NM_001357300)	-4.0	NM_030176	78779.0	Mm.41459	NM_030176	ENSMUSG00000033594	Spata2l	2610039E05Rik|AI648233	spermatogenesis associated 2-like	protein-coding	5.98817309549778	6.00315272098321	5.85660474087392	5.65428274582071	5.94243519870805	5.65895064630068	6.05873928491815	5.73028209502166	-0.0104030509083577	0.968402227275613	0.988694268692349
Merged-chr7-99263704-3	chr7	99263602	99263802	+	988.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_103487, exon 3 of 4)	non-coding (NR_103487, exon 3 of 4)	3516.0	NR_103487	381967.0	Mm.261763	NR_103487	ENSMUSG00000097015	Gm26705	-	predicted gene, 26705	ncRNA	3.92935132592698	4.67592457158625	4.30863080726217	4.14144521047993	4.03712951060647	4.1077356474882	4.01855816639595	3.98143608780059	-0.653272724656028	0.139222624515953	0.414873784489467
Merged-chr2-101715876-4	chr2	101715799	101715999	+	935.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001110849, exon 10 of 10)	3' UTR (NM_001110849, exon 10 of 10)	37479.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	4.50306362432156	4.30976500899214	4.33500405695093	4.27975804564208	4.17562031247506	4.71247602502664	4.44300244308513	4.46075480708602	0.228875959659187	0.553430036684562	0.80019188459821
Merged-chr2-160026048-3	chr2	160025942	160026142	+	712.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040499, intron 2 of 3)	intron (NR_040499, intron 2 of 3)	9389.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	3.61711995322217	3.90896097428026	3.61770077371227	3.35911110373431	2.95975125745691	3.07440196381049	3.09674241991942	2.96020980785858	-2.5000538930658	9.29753927480289e-05	0.00191102959295754
Merged-chr1-151615842-4	chr1	151615735	151615935	+	876.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	44462.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	4.18279668063946	4.4831791972812	4.32196378951184	3.93960976778873	4.58450585084446	4.57746126038232	4.34503321572261	4.02627142519347	0.406252693097071	0.33801430194903	0.647718939249696
Merged-chr4-53134271-4	chr4	53134175	53134375	+	915.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 2 of 49)	intron (NM_013454, intron 2 of 49)	25620.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	5.09575666851595	5.11744387207311	5.39748229180114	5.41331678345206	4.43983313001848	4.70425691879576	4.72007816831414	4.31119857484804	-1.48173898144556	2.20988366276782e-05	0.000556213964753008
Merged-chr11-109410751-4	chr11	109410593	109410793	+	949.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15253.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	4.45416443766279	4.26719577416835	4.75333720083659	4.43583602728054	4.82472783044173	4.40311414202805	4.5151704362742	4.00586227270309	-0.00559441074185053	0.989419198169791	0.995743897483961
Merged-chr17-5189866-4	chr17	5189760	5189960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	CpG	194786.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	7.77399160814483	8.01315071607882	7.34599650260748	8.0533084273347	7.86591526646531	7.9369124074468	7.96717077625901	7.8241194390176	0.0811562343056458	0.687206766930089	0.872152812040952
Merged-chr7-131554016-3	chr7	131553927	131554127	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145998)	promoter-TSS (NM_145998)	-35.0	NM_145998	15372.0	Mm.303357	NM_145998	ENSMUSG00000050100	Hmx2	Nkx-5.2|Nkx5-2	H6 homeobox 2	protein-coding	3.91050102312463	3.91167681618668	3.86325989171771	3.65186963489152	4.0218358038735	3.71041111912108	3.84690781285656	3.59144037483892	-0.0480775741363547	0.918095196349904	0.969798468133041
Merged-chr12-73964458-4	chr12	73964343	73964543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178392)	promoter-TSS (NM_178392)	-87.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	7.44874470967343	7.7842814549419	7.420025711796	7.46887280949983	7.95547129723312	7.64720021786706	7.96199145442678	7.40473581955293	0.300704737572829	0.140184391370971	0.416257200797887
Merged-chr10-7589818-4	chr10	7589725	7589925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359742)	promoter-TSS (NM_001359742)	25.0	NM_001359743	237253.0	Mm.206759	NM_172784	ENSMUSG00000019796	Lrp11	1700034J19Rik|6330533B21|9830160H19Rik	low density lipoprotein receptor-related protein 11	protein-coding	7.73820843178162	7.82219346801918	7.35789653333895	7.60809546765809	7.57382358853966	7.59757331392191	7.66214138538047	7.72639027259466	-0.00581924946569578	0.974395991414227	0.990880609058694
Merged-chr5-123831994-4	chr5	123831914	123832114	+	830.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33502.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	3.79031278860819	3.54836270619824	3.55649457549993	3.54566275754576	4.17721071455631	4.16032595050802	3.92552588500595	4.159249132142	1.43048939085028	0.00112948694362011	0.0148304281792908
Merged-chr8-105609820-2	chr8	105609720	105609920	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081241, intron 1 of 21)	L2|LINE|L2	4591.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	2.96698056304629	2.80845569862579	2.96739320805669	2.80861241626165	2.73040421854023	2.60517738105548	2.71345903229875	2.96572439222314	-0.586100021627066	0.361613718886383	0.666855870682777
Merged-chr4-150789353-4	chr4	150789250	150789450	+	988.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-64446.0	NM_001356323	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	5.00020656470924	5.40632077951304	5.45164184741475	5.17385560475218	5.3947650828419	5.65064572772911	5.39700793629427	5.17711937369581	0.263868584714907	0.380965504025578	0.683305836156047
Merged-chr4-133753860-2	chr4	133753760	133753960	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080819)	promoter-TSS (NM_001080819)	-249.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	4.89473087581757	4.73880718333903	4.86001934453146	4.46021328967013	4.85480429467315	5.03345015050405	4.55868655776334	5.25441824802646	0.433780826012166	0.231941747821474	0.541542911150474
Merged-chr9-77917287-4	chr9	77917175	77917375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134255)	promoter-TSS (NM_134255)	-90.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	8.92587296585339	9.00397635137934	9.01608972912435	8.82169644881792	8.86989309802844	8.93571897761463	8.87626287174904	8.60947305971635	-0.139447622118146	0.35925854365536	0.665247576974058
Merged-chr10-41620974-4	chr10	41620879	41621079	+	882.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 23 of 47)	intron (NM_001358562, intron 23 of 47)	52963.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	3.69485469915734	3.83882330084938	3.63641241722723	3.72559277898592	4.31211577576389	3.81475344211722	4.15249123504658	3.85560512525554	0.926108629556296	0.0410641977524797	0.204972547813728
Merged-chr6-39573942-4	chr6	39573876	39574076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178873)	promoter-TSS (NM_178873)	100.0	NM_178873	57869.0	Mm.247957	NM_178873	ENSMUSG00000046947	Adck2	AA408112|BB006057	aarF domain containing kinase 2	protein-coding	5.97989649405541	5.95162262465387	6.21420985311947	6.09827740286057	5.44845312538676	5.60855633695268	5.76777529564672	6.07912679917733	-0.526037714767436	0.050717809178597	0.233499848717355
Merged-chr9-90043069-4	chr9	90042955	90043155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	-11212.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	7.19798674248931	7.4157467056875	7.15119713311789	7.12027245840702	7.64817945097568	7.81050225818627	8.05025084760953	7.61123304662633	0.750388135490492	9.01981152805696e-05	0.00186147046899265
Merged-chr1-182124725-4	chr1	182124652	182124852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012058)	promoter-TSS (NM_012058)	15.0	NM_012058	27058.0	Mm.273196	NM_012058	ENSMUSG00000026511	Srp9	9kDa	signal recognition particle 9	protein-coding	7.90577692924443	7.96539858718964	7.5625550931612	7.75548395922933	7.89870949429223	7.97221811060906	8.33974230801662	7.76559555949563	0.265356039431704	0.175428837654787	0.470137395912276
Merged-chr7-127274096-4	chr7	127273998	127274198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009266)	promoter-TSS (NM_009266)	-39.0	NM_009266	20768.0	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	6.20550438467393	6.30592713965721	5.92208491716104	5.83080202507	6.39429779241339	6.6132591664625	5.93972332687892	6.5579531277158	0.497572109935933	0.060358648161133	0.259502269345037
Merged-chr3-59220187-3	chr3	59220089	59220289	+	855.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357007, intron 1 of 2)	intron (NM_001357007, intron 1 of 2)	-9307.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	3.10524793939065	2.88702502429067	3.10571802396843	3.08185071882103	2.55463211812544	2.71205377989225	2.80731913517349	2.60601110911384	-1.91357984675688	0.00552564324202955	0.0511414219164595
Merged-chr15-66814163-4	chr15	66814074	66814274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	17655.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	6.80840465116809	6.83297682018735	7.13553142147929	6.76717843974336	6.62628644207141	6.65818353406566	6.82874769088038	6.38285670079716	-0.359968250129013	0.0972345072187875	0.341662387783288
Merged-chr9-108710922-4	chr9	108710810	108711010	+	953.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008924, intron 1 of 10)	intron (NM_008924, intron 1 of 10)	18767.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	4.47761663620576	4.47338939645164	4.34113437410086	4.43317009662546	4.7919993012686	4.31650913595039	4.76220524445731	4.97124992581203	0.662510608973898	0.0718676839158772	0.287967843823447
Merged-chr2-121955375-4	chr2	121955279	121955479	+	901.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290992)	promoter-TSS (NM_001290992)	-622.0	NM_001290992	329506.0	Mm.249405	NM_212450	ENSMUSG00000033411	Ctdspl2	D2Ertd485e|SCP4	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	protein-coding	4.41113702143337	4.49552170749651	4.969160800491	4.62063005282155	4.35802065156206	4.71895627377744	4.9141858425882	4.40909092662401	-0.0540603397847433	0.889527494694941	0.958587720774722
Merged-chr8-66438690-4	chr8	66438590	66438790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	47840.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	6.71297669643969	5.85847243575321	7.06998529457787	6.70261779604053	6.37905895784958	6.45546832754139	6.77506444084503	6.36913211725804	-0.217211596739807	0.456687624972255	0.74000882449207
Merged-chr18-42262235-4	chr18	42262131	42262331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134137)	promoter-TSS (NM_134137)	-160.0	NM_134137	107045.0	Mm.312170	NM_134137	ENSMUSG00000024493	Lars	2310045K21Rik|3110009L02Rik|AW536573|mKIAA1352	leucyl-tRNA synthetase	protein-coding	8.93993904543623	8.90240419360186	8.92648208361863	9.04001694115283	9.14409752292211	8.98285478569034	8.98333692634868	8.85197170110721	0.0523526072103023	0.719450533461775	0.887979357053506
Merged-chr14-32786335-2	chr14	32786235	32786435	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163616, intron 1 of 4)	intron (NM_001163616, intron 1 of 4)	372.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	3.99707894460063	4.07756297636315	4.30115641928954	3.97602407237319	3.66669002998678	4.17006561189237	3.9806171476539	3.9454582057886	-0.39296586207304	0.377169738354956	0.679866410209871
Merged-chr6-124830534-2	chr6	124830434	124830634	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013538, exon 2 of 6)	exon (NM_013538, exon 2 of 6)	358.0	NM_013538	14793.0	Mm.285723	NM_013538	ENSMUSG00000023505	Cdca3	2410005A12Rik|C8|Grcc8|Tome-1	cell division cycle associated 3	protein-coding	2.9275898742072	2.65218438286338	2.86334243001475	2.61995922833397	2.87144213941425	3.16163558574018	3.03597905869376	3.20836493737627	1.36345740984641	0.0269288415371544	0.155985763516539
Merged-chr2-160044722-4	chr2	160044638	160044838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	28085.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	6.91183053811311	7.11511757912409	6.72528379836113	6.75168785448362	6.50407431276458	6.62919275507651	6.5215489266522	6.16671374916781	-0.596834507234639	0.00785154246135953	0.0663262450578103
Merged-chr2-152187298-4	chr2	152187201	152187401	+	859.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-39539.0	NM_007788	12995.0	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	CK2|Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	4.04227689510356	4.25339508661358	3.94251315456926	4.26788868976492	4.07346162617384	3.8345039263183	4.11781394711711	4.13340571022974	-0.254451444741728	0.548974471302776	0.797790253922268
Merged-chr2-148558543-4	chr2	148558457	148558657	+	885.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114058.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	4.13294240976199	4.1707106429158	3.92410195679412	4.55110745683794	4.39099951983742	4.10309621658401	4.55577825649563	3.97744780735717	0.116586753653154	0.796398190908471	0.921107972290046
Merged-chr17-67354601-4	chr17	67354510	67354710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008984)	promoter-TSS (NM_008984)	-119.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	7.78226208848763	8.26552353009319	8.49938557776322	8.28389672646435	8.31319341157408	8.384912764606	8.53343477744506	8.05586806088213	0.124557118101262	0.534719374834155	0.789348176641925
Merged-chr19-23687417-4	chr19	23687339	23687539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028208)	promoter-TSS (NM_028208)	39.0	NM_028208	72351.0	Mm.474795	NM_028208	ENSMUSG00000074925	Ptar1	1700084D09Rik|2010013L17Rik|4930428J16Rik|AI449677	protein prenyltransferase alpha subunit repeat containing 1	protein-coding	7.33207584276381	7.05805933537166	7.07642635728094	7.32938447376451	6.83423932146267	6.91534313907657	6.83536179074429	7.02300243759351	-0.428499294907191	0.0278675920178526	0.159593477531477
Merged-chr5-45923191-5	chr5	45923076	45923276	+	862.56665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9233.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	3.26174429545311	3.22032516878949	3.72875217796608	2.85287756342007	3.86032748765232	3.69363459203097	3.892724375807	3.82101895679544	1.71331880830645	0.00285871836556098	0.0307977470171432
Merged-chr17-47009655-2	chr17	47009555	47009755	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146078, intron 1 of 46)	intron (NM_146078, intron 1 of 46)	877.0	NM_146078	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	3.3695446904699	3.61400965233352	3.30819043433766	2.77062164249489	3.38800622422801	3.9053753723006	3.47108273598273	3.53781573549488	0.948781857999748	0.118576745352904	0.380943047367502
Merged-chr9-92250223-2	chr9	92250123	92250323	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011636)	promoter-TSS (NM_011636)	29.0	NM_011636	22038.0	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding	4.86440444906565	4.79360422952151	4.79535820580582	5.27148906956441	4.58886904261008	4.34575422750961	4.58069819978778	4.46721510361377	-0.982988970811093	0.00769201793754437	0.0653587375882142
Merged-chr4-149504925-4	chr4	149504815	149505015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13326.0	NM_023465	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	5.19067826899352	5.01368623303735	5.12610275200158	5.528982095421	5.02786457376028	5.08567461282221	5.39665428288696	5.36601981711751	-0.0465459467713623	0.885356796723274	0.956984644600969
Merged-chr17-74328327-3	chr17	74328218	74328418	+	753.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4374.0	NM_024428	66310.0	Mm.28536	NM_024428	ENSMUSG00000024067	Dpy30	2810410M20Rik|C87842	dpy-30, histone methyltransferase complex regulatory subunit	protein-coding	4.14633695535577	4.13796064469398	3.88585976005188	3.68147860758953	4.55982772599214	4.2251179689286	4.42048076479074	4.32094149834675	1.09545521324438	0.00903712496902085	0.0733554017755656
Merged-chr15-79224892-4	chr15	79224797	79224997	+	945.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4276.0	NM_008837	18693.0	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	5.16998897282073	5.3989622615236	4.77772328837474	4.71400965926868	4.84177707524631	5.59133891748108	4.94724548304003	4.93154270808167	0.129047619342512	0.732938524148636	0.894275725540574
Merged-chr9-23597947-4	chr9	23597821	23598021	+	988.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	374845.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	5.41866996821689	5.06616668879831	5.22311921160794	5.12709576203365	5.31875312071002	4.88771529031059	5.00209170519919	5.18877892131799	-0.15931408767866	0.612327585781272	0.832715671052909
Merged-chr9-106199231-4	chr9	106199105	106199305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026447)	promoter-TSS (NM_026447)	28.0	NM_026447	67905.0	Mm.23018	NM_026447	ENSMUSG00000020253	Ppm1m	2810423O19Rik|AW610647|C77250|PP2Ceta	protein phosphatase 1M	protein-coding	6.50283240575856	6.52809709694535	6.47167309727099	6.22082138152419	6.28478856880773	6.33335326177311	6.2637914287007	6.31012341814826	-0.188298777129232	0.397789878436191	0.696054529321669
Merged-chr7-116328038-4	chr7	116327934	116328134	+	967.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER63D|DNA|hAT-Blackjack	6156.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	5.07386229720875	5.18647746343527	4.73885587128317	4.94431097864661	5.20283766703004	4.99834264381387	5.25926138479137	4.9688762894788	0.236283329747584	0.457415094652916	0.740517866179177
Merged-chr3-27236996-4	chr3	27236874	27237074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	MTC|LTR|ERVL-MaLR	53970.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	6.94212100573861	7.04129968176896	6.91679356884298	7.07023273753697	7.14253865110626	6.77663237579841	7.05607441524576	7.2298161225936	0.0928460509356863	0.638849575865165	0.847409779354821
Merged-chr14-55788329-4	chr14	55788254	55788454	+	966.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019955, exon 2 of 10)	exon (NM_019955, exon 2 of 10)	503.0	NM_001164107	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	4.92991165950484	4.61402884650012	4.7536624198776	4.76920867164022	4.67813863100794	4.4878613972708	4.8043588560064	5.13923465739684	0.0601550303581128	0.865836820465569	0.949727926552738
Merged-chr10-88390409-6	chr10	88390307	88390507	+	899.0972289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 1 of 20)	intron (NM_001004164, intron 1 of 20)	10995.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	3.85406379405416	3.98938974820318	4.20210192706954	4.50530860863212	4.24807399120437	3.91720943544988	3.89492112202815	4.3234538939404	-0.161337851493691	0.728183164804854	0.891829544850901
Merged-chr3-121262960-3	chr3	121262770	121262970	+	947.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355678, exon 1 of 8)	5' UTR (NM_001355678, exon 1 of 8)	289.0	NM_001355678	99887.0	Mm.26088	NM_178936	ENSMUSG00000028132	Tmem56	4930577M16Rik|AU018104|AW109744|C730036B01Rik	transmembrane protein 56	protein-coding	3.84875295430399	4.1029646609926	4.2934751679037	3.96086665287938	3.83713322213393	3.53209405651623	3.7243765141306	4.25266803590564	-0.529819329599167	0.276298319697503	0.588363492423519
Merged-chr2-27350515-4	chr2	27350399	27350599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	RMER1C|Other|Other	77109.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	7.45067049891216	7.69415770295875	7.22331328372276	7.55234980696777	7.49568301152361	7.37696848864459	7.4616984694888	7.37830506080195	-0.0880957041121321	0.635291473433202	0.845633612363053
Merged-chr3-94582704-4	chr3	94582604	94582804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029721)	promoter-TSS (NM_029721)	12.0	NM_001082484	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	6.96722497272886	6.98060998547814	6.91831736820105	6.83276989993221	6.80144570479675	6.52437684685448	6.81792534650553	6.61146167151675	-0.309109712347292	0.124628984279399	0.391951700865256
Merged-chr12-35888249-1	chr12	35888149	35888349	+	637.0	f1_balb.idr	Intergenic	Intergenic	-37372.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	3.09049250648864	2.82186435633588	2.8130357722779	3.31414679973692	2.44437132880562	2.56397553016348	2.6050370272464	2.53723992345151	-2.83263046790709	0.000440702253556937	0.00695691854201136
Merged-chr12-76552542-4	chr12	76552443	76552643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	-4618.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	7.09452829028274	7.16906294532375	7.37254858430967	7.58732649097692	7.34423772629804	7.2855869373078	7.46735489353924	7.37731935867461	0.0480491442662551	0.808420062732296	0.926073961072841
Merged-chr15-99500401-3	chr15	99500308	99500508	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038658, intron 11 of 11)	intron (NM_001038658, intron 11 of 11)	-25678.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	3.54924599309715	3.56076759455438	3.75280264452493	3.54862136673606	3.43987565778286	3.60862173430486	3.53601692128489	3.70300129074784	-0.100074577686034	0.835788120828259	0.937523641201398
Merged-chr8-13155529-4	chr8	13155382	13155582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3679.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	6.82730385551351	6.80211931448151	6.80149406401779	6.47906564183313	6.64220913530461	6.61767655220021	6.52802001153409	6.78294465427108	-0.107568358514607	0.615800261799126	0.83467255086626
Merged-chr2-84455385-4	chr2	84455301	84455501	+	977.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355271, intron 3 of 8)	intron (NM_001355271, intron 3 of 8)	18773.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	4.75943407977637	4.48170983440973	4.08372127388419	4.84306281641859	5.14722374782483	4.26963590581811	4.42305081402488	4.68487011923831	0.22551755400762	0.615033634181399	0.834265927342435
Merged-chr11-106463234-4	chr11	106463131	106463331	+	802.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 1 of 21)	RSINE1|SINE|B4	24565.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	3.76535557061812	3.72412214671491	3.76586209956942	3.88957216463839	4.05360649410965	3.76949097868797	4.16415888692266	4.05670981937925	0.625307105256777	0.155347722139933	0.440979076070846
Merged-chr13-51850420-4	chr13	51850289	51850489	+	820.071411	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3714.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	3.69496177985025	4.06032122615126	3.53236413022258	3.623990172128	3.62298764723346	3.64901778946726	3.26842444549421	3.69334576762743	-0.539726449692894	0.297845569110805	0.610011790405076
Merged-chr14-75182650-2	chr14	75182550	75182750	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	46225.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	3.02574437653765	3.33874503514966	2.95602821437926	2.86714100984288	3.41437309035674	3.26925850591577	3.55919912328677	3.27292524117527	1.25054918985557	0.028358601354283	0.16137966787628
Merged-chr7-129994930-4	chr7	129994846	129995046	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	32781.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	4.91662356890324	4.92248812935831	4.79887008163792	4.95219551594438	5.08636674564654	5.36104851542184	5.30604301212504	5.32917451375945	0.686251655445764	0.0241368150531649	0.144981802419344
Merged-chr11-29864480-4	chr11	29864362	29864562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 7 of 41)	Lx7|LINE|L1	-38794.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	6.04902804366297	5.70559486480985	5.78433408353853	6.12944752818333	5.96181183354752	5.62749547058264	5.87190917160529	5.75536129435811	-0.197284116431436	0.455623487985684	0.739054394131757
Merged-chr11-61793581-4	chr11	61793473	61793673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013881, intron 20 of 26)	intron (NM_013881, intron 20 of 26)	-31485.0	NM_001164243	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	6.89789466039163	6.57416339385579	7.22012543186499	7.206841021157	6.71582921584086	6.28968165479817	6.96412547537423	6.75621832554558	-0.420556290767246	0.0911254124731218	0.32983553188021
Merged-chr10-121585320-3	chr10	121585235	121585435	+	873.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019786, intron 1 of 20)	intron (NM_019786, intron 1 of 20)	1459.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	3.54396156404663	3.74261699970011	3.6976425456019	3.12154552450416	3.38070338547967	3.71679115654152	3.23081879350927	3.59544693746153	-0.168924870695159	0.762867607279395	0.907015239695587
Merged-chr15-58145859-3	chr15	58145783	58145983	+	904.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029734, intron 1 of 5)	PB1D9|SINE|Alu	4517.0	NM_001326599	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	3.03300859715207	3.09255416701663	3.11685260053178	2.58037387403534	4.14147591000299	4.09392180311884	4.14729117887981	4.44127806513929	5.08769911979884	2.95210713608569e-15	4.99116469927418e-13
Merged-chr19-21946667-4	chr19	21946575	21946775	+	997.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	168335.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	5.36846628855956	5.20936564237816	5.14312322910273	5.22952230754494	6.89012417845894	6.80048375782999	6.23238417890546	6.05313159359261	2.07204153360795	1.58646137097271e-12	1.63893663170489e-10
Merged-chr4-58912181-4	chr4	58912083	58912283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355697)	promoter-TSS (NM_001355697)	-253.0	NM_001355696	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	5.03270331563721	5.35574428965644	5.37640901248832	5.24659486391447	4.98917740497654	4.8022476309618	4.81867790265391	5.74655663530084	-0.197116336549297	0.590840691562268	0.821283214886845
Merged-chr17-32275541-3	chr17	32275453	32275653	+	833.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286630, intron 1 of 19)	intron (NM_001286630, intron 1 of 19)	8570.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	3.64850731332785	4.01184949607088	3.80981373410382	3.83331321170756	4.01710995781736	3.64536564011909	3.69054792642367	3.80762749028018	-0.0749021169074686	0.872349392337346	0.952024737008678
Merged-chr11-51857307-4	chr11	51857229	51857429	+	909.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357588, exon 1 of 13)	exon (NM_001357588, exon 1 of 13)	152.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	3.98922562735976	3.89109870833953	4.40680604082517	4.28759339259632	4.30015134812322	4.40984901827126	4.21909211695109	4.44279671743025	0.429626607196883	0.29722408871001	0.609367580883809
Merged-chr5-16434784-4	chr5	16434691	16434891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-118704.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	6.3586367511496	6.07558970493313	6.71363879972008	6.79102588190963	6.4787588180122	6.35883299024824	6.77339212796796	6.42736266371562	-0.00997013892715535	0.969010187315413	0.988862740113602
Merged-chr19-11065401-4	chr19	11065314	11065514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-14848.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	6.38272528684763	5.78292577227579	6.0717583561761	6.05343394987674	5.60933318814018	5.49446264438619	5.70544301328396	5.80542944999371	-0.689821865525585	0.0101439661708414	0.0797217456126757
Merged-chr1-172482401-2	chr1	172482300	172482500	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033608)	promoter-TSS (NM_033608)	83.0	NM_033608	93842.0	Mm.214530	NM_033608	ENSMUSG00000037995	Igsf9	644ETD8|Dasm1|Kiaa1355-hp|NRT1|Ncaml|mKIAA1355	immunoglobulin superfamily, member 9	protein-coding	4.96445209977077	5.06642847078168	4.51452894245032	4.21866806978406	4.91378100991627	4.85750708397665	4.58026334673516	4.59852960278177	0.0474586074664434	0.906777316276784	0.965425346885368
Merged-chr14-77448213-2	chr14	77448114	77448314	+	937.25	f0_c57.idr|f1_c57bl6.idr	intron (NM_001253759, intron 5 of 19)	intron (NM_001253759, intron 5 of 19)	58654.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	3.0484446714726	3.03272196249965	3.04877986010591	2.40246157766579	4.10707356160307	4.35612367712063	4.80503991660891	4.21451359788957	7.25812246867809	3.30361292843967e-17	7.58541498817444e-15
Merged-chr4-148772968-4	chr4	148772858	148773058	+	952.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-31434.0	NM_001159344	69743.0	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	4.83468893682945	4.68218741373294	5.11631780407417	4.95998397498642	4.59257498638857	4.16988110005634	4.58495856528735	4.83222787303558	-0.716099802838563	0.0558770616528876	0.247408000053491
Merged-chr15-10981796-4	chr15	10981686	10981886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008537)	promoter-TSS (NM_008537)	30.0	NM_008537	17117.0	Mm.2787	NM_008537	ENSMUSG00000022244	Amacr	Macr1	alpha-methylacyl-CoA racemase	protein-coding	7.92293961278872	7.77053301606302	8.41718389319391	8.16666168485369	7.64270663581007	8.02780777580929	8.02842742920833	8.02242944018131	-0.203209677323645	0.318131902705648	0.63003757714634
Merged-chr19-45658849-3	chr19	45658762	45658962	+	931.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 1 of 8)	intron (NM_013907, intron 1 of 8)	1331.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	3.13884025955717	3.31735461726111	3.13922046473788	3.25732099081651	3.03649561495332	3.4203431725136	3.00394267648435	3.19666970453298	-0.190893220140174	0.735873266402821	0.895714951678205
Merged-chr7-73531740-4	chr7	73531621	73531821	+	957.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	B4A|SINE|B4	10025.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	5.13873875575791	4.87635712186947	4.64806868503669	4.97562153368579	4.95795335899603	4.59706146583911	4.99302192141637	4.80573682907709	-0.140825999125168	0.679699783144448	0.86857902618052
Merged-chr7-122209302-4	chr7	122209200	122209400	+	909.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10196.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	4.72972227057237	4.8564472942391	4.73049581652863	4.89006533176603	4.39110846544938	4.65702675816746	4.41212875310338	5.17187254864206	-0.241247031491181	0.529253699316376	0.785565932185397
Merged-chr16-90044270-4	chr16	90044168	90044368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69569.0	NM_001145886	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	7.75893655721792	7.15364137974688	7.82725167366405	7.90607510060328	7.58760533325748	7.34229510806891	7.55099103499479	7.62619853565145	-0.216473458645225	0.314331858880248	0.626354487695056
Merged-chr6-52714346-4	chr6	52714221	52714421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355596, exon 1 of 18)	5' UTR (NM_001355596, exon 1 of 18)	156.0	NM_001355596	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	5.60674365359987	5.80349305573623	6.1825702265468	5.73163707557889	5.19054355770298	5.45108059135424	5.63188481773038	5.87029684255356	-0.488219922999439	0.106089837077538	0.358925587674763
Merged-chr12-105823664-4	chr12	105823565	105823765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347440, exon 16 of 21)	exon (NM_001347440, exon 16 of 21)	38968.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	5.8132191408812	5.38602964824749	5.37425997722225	5.98353581989044	5.61793712499856	5.3178317237695	5.18422281291644	5.67183439436837	-0.361229854451068	0.252342265624386	0.563645884616847
Merged-chr8-27175225-4	chr8	27175134	27175334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080813)	promoter-TSS (NM_001080813)	-588.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	7.4645300046526	7.78770070214772	7.62302818092136	7.79659200059488	7.85496531115774	7.57255205105331	7.78545610848484	7.70180832235622	0.0714658656086085	0.688825432511644	0.872980495973815
Merged-chr10-127588515-2	chr10	127588415	127588615	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 14 of 89)	exon (NM_008512, exon 14 of 89)	32633.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	3.19385550940149	2.91952370485818	3.00533456462612	3.13828991838129	3.16387709628601	3.30675637209319	3.48892001167842	3.24985961478273	0.876432757489245	0.117274985605531	0.378726745629331
Merged-chr11-68407435-4	chr11	68407367	68407567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20641.0	NM_008744	18208.0	Mm.39095	NM_008744	ENSMUSG00000020902	Ntn1	AI561871|BC019633|Netrin-1	netrin 1	protein-coding	5.60565660228227	5.29534849404154	5.65732788247701	5.96456782656163	5.32786761014201	5.46258927528064	5.47115657578703	5.67789388742899	-0.315074171724609	0.292167429200235	0.604571570431788
Merged-chr4-150673046-3	chr4	150672929	150673129	+	982.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20855.0	NM_173774	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	4.25195723486994	4.39774650851857	3.89739903253722	3.9253985473526	3.62034943497438	3.79516544570104	3.82953350619036	3.78872411187969	-1.06205746116188	0.0229979762101873	0.140392191137643
Merged-chr6-86669416-4	chr6	86669303	86669503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010751)	promoter-TSS (NM_010751)	-244.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	9.43936442837908	9.60575138269091	9.51604338384115	9.48549940094008	9.5869795514135	9.64792937492562	9.78564769356589	9.44842595206418	0.134204348926087	0.346991838296095	0.655063973532721
Merged-chr14-46872804-2	chr14	46872716	46872916	+	597.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-10149.0	NM_028966	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	2.84834284621151	3.12682317693878	2.84860078453481	2.91305248053753	3.19007346536186	3.57831946071476	3.39448101297938	3.50511419472691	1.82997682398383	0.00171195756869829	0.0206955549902133
Merged-chr1-183978794-4	chr1	183978661	183978861	+	984.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	55237.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	4.93006989532963	4.89664144112617	5.70467912764858	5.5385734873398	5.49320340298616	5.37675190674611	5.80647203645457	5.81136141396679	0.533005582057048	0.119296397390561	0.382168336552625
Merged-chr6-15792959-4	chr6	15792856	15793056	+	936.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 4 of 4)	intron (NM_175088, intron 4 of 4)	72295.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	4.39738055669539	4.36954961380562	4.09571653682936	4.41688253269325	4.65833707956859	4.43417167273701	4.85564259436726	4.84548338471447	0.83134919277819	0.0263729287468106	0.153985892071453
Merged-chr3-137879497-4	chr3	137879388	137879588	+	950.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033155, intron 1 of 7)	RSINE1|SINE|B4	11813.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	4.6752362326963	5.03397633869131	4.78830452300984	4.80306026491371	4.4971173717793	4.44758496764449	4.61483659044747	4.74880852268679	-0.542787016632987	0.121425696674025	0.385949792960633
Merged-chr14-73382936-4	chr14	73382814	73383014	+	988.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	2375.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	4.94489548890529	4.51770229455883	5.13864402754573	5.32189930500328	5.04590231104377	4.76721374324835	4.88695407386557	4.79543336722638	-0.282585936709746	0.438653630406857	0.726638431397744
Merged-chr7-81203723-4	chr7	81203584	81203784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10D2|LTR|ERVK	-10120.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	6.35838825775559	6.23047028434024	6.74440102678542	5.0948975858043	6.71640025100136	6.55440569723116	6.66951008551326	6.31841129461361	0.505030290170005	0.148859620913824	0.430746673512948
Merged-chr8-109687502-4	chr8	109687425	109687625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155034, intron 1 of 10)	MLTR31A_MM|LTR|ERVK	5769.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	6.65130239603846	6.68406626927789	7.19271126618402	6.87402882740403	6.98389324702513	6.46271508805768	7.41828578754603	6.7255772180965	0.115627415474718	0.660698210209742	0.859001764228847
Merged-chr10-94304542-4	chr10	94304449	94304649	+	932.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5846.0	NR_033209	215472.0	Mm.255656	NM_174999	ENSMUSG00000053420	Gm4792	E130012K09|EG215472	predicted gene 4792	ncRNA	4.97257091852952	4.93373789081067	4.69251556724671	5.27921078064906	4.48779956549082	4.46377553810565	4.59023862155673	4.42961126567702	-1.08687884999031	0.00276241316376182	0.0299460564397506
Merged-chr9-109923997-4	chr9	109923914	109924114	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7760.0	NM_001205331	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	5.0689102639346	5.07418470506321	4.92312210767665	4.83535558863169	5.366524636994	5.31173620477816	5.45268910594715	5.34498235041865	0.753238706752557	0.0100924724602401	0.0794657268268161
Merged-chr1-74381642-4	chr1	74381522	74381722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013612, intron 8 of 14)	intron (NM_013612, intron 8 of 14)	6419.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	7.99017707652247	7.82893630713671	8.05876034888793	7.74163452578736	8.13518309360481	8.66484150945183	8.27891676384805	7.92237714217866	0.47608774011485	0.0186247656178648	0.122101457854008
Merged-chr11-44545388-4	chr11	44545287	44545487	+	988.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 4 of 5)	intron (NM_001166553, intron 4 of 5)	26010.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	5.52140017103748	4.98902995949026	5.41169865097406	5.66309757422408	5.32182071189745	5.55716614472035	5.66618882272393	5.28680808125318	0.0543918808877271	0.861769279004387	0.947831687839998
Merged-chr18-4247477-4	chr18	4247372	4247572	+	972.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	81640.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	5.35833624494706	5.03187307945808	5.21267908214711	5.51010498566611	5.16618371609417	4.9527335380185	5.12379962965917	5.20909290257641	-0.341953647120006	0.27113356565278	0.582928567058304
Merged-chr10-78482082-4	chr10	78481983	78482183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-17135.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	6.56998593475434	6.66811034919411	6.83462263293127	6.65108776966612	6.4808598778604	6.5740297753622	6.83876716993178	6.69046850834219	-0.049459719891116	0.81438273380938	0.928332670475286
Merged-chr1-191599435-4	chr1	191599330	191599530	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178632, intron 7 of 19)	intron (NM_178632, intron 7 of 19)	23794.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	5.08169343177078	5.07663135247094	5.15556733112934	5.21515436734854	5.98088472522787	5.72421942039489	5.82050503986895	5.37930728343081	1.06284230530236	0.000261132354082229	0.00452903017329896
Merged-chr12-85393689-3	chr12	85393585	85393785	+	896.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18968.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	3.25749755557689	3.37494930204849	3.19905523725294	3.53673150785179	3.31279785137325	3.11269261900984	2.92606599601177	3.41777722947344	-0.541090637812459	0.356011413992239	0.662688261632198
Merged-chr18-26863704-4	chr18	26863590	26863790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1109533.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	6.05384734410561	5.87380959327404	6.2901976720816	6.54448934064399	6.69761456761061	6.44858203344596	7.17855918534721	6.61094528104112	0.777856929083158	0.00450568160910989	0.0439874672456367
Merged-chr13-102694809-2	chr13	102694709	102694909	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360519, intron 1 of 2)	MLT1B|LTR|ERVL-MaLR	1251.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	3.29983143755878	3.33074286380226	3.30025860936442	3.3410893513961	3.35304699313496	3.15373936854518	3.03462723120037	3.77815693868716	0.156552636249487	0.784772312454936	0.916241189783762
Merged-chr4-120857199-4	chr4	120857081	120857281	+	867.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 1 of 7)	intron (NM_182929, intron 1 of 7)	2382.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	4.15614040926886	3.899395170446	4.30570091600996	4.55947631320531	4.40261839892362	4.6127757427384	4.81196079483251	4.70279649444011	0.826151036794725	0.0496378779260373	0.230715326687829
Merged-chr11-106146503-4	chr11	106146405	106146605	+	807.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 8 of 15)	intron (NM_011947, intron 8 of 15)	13422.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	4.12286280605557	3.8688015194524	3.45579773624683	3.45815122934362	4.17866890767091	3.70195122645761	3.88843178149372	3.75210206363683	0.427554583158794	0.405870514475171	0.702456276834042
Merged-chr6-131388467-4	chr6	131388416	131388616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139117)	promoter-TSS (NM_139117)	-66.0	NM_011733	56449.0	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	5.88830871616686	6.06974769361196	6.2309448035086	6.50516924766046	5.96150898650072	5.96603682435036	6.2536085273695	6.16913379599532	-0.188347843317508	0.469321996571515	0.748251025868274
Merged-chr14-70361646-4	chr14	70361550	70361750	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-10226.0	NM_001135151	213053.0	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	5.0580109901645	5.22656921185551	5.15663702448597	4.6811421695439	5.50414441155899	4.65721868809511	5.27772551561981	5.08880459169687	0.27295776467472	0.451122849198342	0.735774833837515
Merged-chr10-93549327-3	chr10	93549252	93549452	+	784.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175488, intron 3 of 15)	intron (NM_175488, intron 3 of 15)	-5529.0	NM_001359749	237465.0	Mm.477086	NM_175488	ENSMUSG00000036168	Ccdc38	4933417K05Rik	coiled-coil domain containing 38	protein-coding	3.38783223414721	3.35197730083806	3.75846402372707	3.28048573695842	3.20697789749105	3.05461658007362	3.07743142878062	3.2143219431483	-1.15509753477293	0.0449662554813195	0.216728947650653
Merged-chr12-80230200-4	chr12	80230119	80230319	+	829.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	30152.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	3.97581821665819	4.0800575698156	4.45422286804373	4.66502334434233	4.08071972938321	3.93007585520292	3.79431393593692	4.12289915240295	-0.886966054549425	0.0537723638287431	0.242052726612157
Merged-chr1-136683942-4	chr1	136683850	136684050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045325, intron 1 of 2)	intron (NR_045325, intron 1 of 2)	321.0	NR_045325	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	7.50507165995742	7.20480006943129	7.6656059628027	7.50965312729472	7.38565481629431	7.19886053488883	7.25592656435815	7.02903975735206	-0.336726751273679	0.0864653021250194	0.320676989169612
Merged-chr3-135477090-4	chr3	135476981	135477181	+	941.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8530.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	4.8979377378207	4.679328010669	4.8643599709533	5.06492720997451	4.3627558629103	4.89048382327944	4.80585235323361	4.63279837640476	-0.454221437135031	0.206251472366593	0.510210725476936
Merged-chr19-29500547-4	chr19	29500449	29500649	+	970.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21438.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	4.77403836911022	4.78081695397773	4.97834885185168	4.99918535705496	4.82822929113615	4.47168925134926	4.37308323856398	4.73434208549061	-0.558590316577714	0.118304542351407	0.380450324253661
Merged-chr7-67952277-2	chr7	67952177	67952377	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010513)	promoter-TSS (NM_010513)	20.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	4.31483598531939	4.29137350376898	4.44356812660007	4.71823465310312	4.20976471241196	4.19435068132489	4.15583725091969	4.62864922097217	-0.374234661267988	0.360611246144578	0.665919212407671
Merged-chr5-65326846-4	chr5	65326731	65326931	+	685.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011258, intron 1 of 24)	intron (NM_011258, intron 1 of 24)	8808.0	NM_011258	19687.0	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	3.57284441027693	3.85473479217561	3.57332550305589	3.38843693193082	3.73948720652333	3.63306251796232	3.38377452521641	3.82227014173261	0.174580207283454	0.729439784822928	0.892631338649919
Merged-chr10-127322908-5	chr10	127322824	127323024	+	774.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359656)	promoter-TSS (NM_001359656)	-783.0	NM_146011	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	3.43575218435358	3.36079588264314	3.49084939611919	3.37405832821852	3.26871648400136	3.43344613745193	3.30772264412719	3.77427305205826	0.152220184383779	0.77086258118827	0.910321191255463
Merged-chr16-50431766-4	chr16	50431674	50431874	+	992.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 1 of 16)	CpG	615.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	5.62907024744386	5.29757694858866	5.31655333962573	5.24930818436112	5.03814644833659	5.07980824224797	5.1664541376822	5.50495600803457	-0.30400707633142	0.324401189018839	0.636015761828176
Merged-chr19-32895834-1	chr19	32895734	32895934	+	727.5	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	138257.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	4.32776073090324	4.14415968673727	4.44548395093849	3.99996048876361	4.22216779752778	4.32591723460335	3.98805528843697	4.00207918438796	-0.20861751891846	0.621773311686901	0.838003935782923
Merged-chr6-89045821-3	chr6	89045694	89045894	+	951.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50316.0	NR_134978	232217.0	Mm.281744	NM_175017	ENSMUSG00000055403	4933427D06Rik	-	RIKEN cDNA 4933427D06 gene	ncRNA	4.35528145536459	4.72406428780181	4.76466016617434	5.60007851395829	3.81012682115905	4.44044500463531	4.18588284382329	4.30447465930474	-1.70212378765333	0.000371626500183984	0.00604617203579333
Merged-chr15-65787139-4	chr15	65787055	65787255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001356582, exon 1 of 23)	5' UTR (NM_001356582, exon 1 of 23)	135.0	NM_001356582	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	7.74721153466461	7.8813757599523	8.4508554807278	8.12338953254001	7.70973113750852	7.88458415308429	7.90714034286843	7.79934277681398	-0.329255570915734	0.099212135791524	0.345420604998225
Merged-chr2-90577765-4	chr2	90577654	90577854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	B4A|SINE|B4	2893.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.83683893500747	7.02791217381636	6.9308295226564	6.56473886865715	6.97112768189875	6.79006529679731	6.80333201222267	6.8603928484485	0.0343621851501592	0.871091649278196	0.951542065099871
Merged-chr4-149780775-4	chr4	149780681	149780881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD|LINE|L1	-6514.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	7.94744267168834	7.92033015371959	7.5671378133097	7.66611216076255	7.70969715973096	7.78905395310559	7.50283820408729	7.68333438561532	-0.140222739610818	0.441264339568572	0.728396857622944
Merged-chr8-45344473-4	chr8	45344384	45344584	+	906.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153535, exon 10 of 14)	exon (NM_153535, exon 10 of 14)	-11288.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	3.56457019541319	4.11093812882455	3.8749198656064	3.82133447801777	4.53040507382854	4.29895920069235	3.96482634236265	4.37281068831074	1.17084539126705	0.00924472271649412	0.0746065893693123
Merged-chr15-66883830-3	chr15	66883748	66883948	+	751.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7545.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	3.46050935536089	3.65148255835785	3.35934473373591	3.71935057625411	2.67143574975324	2.79718108258171	2.7639510814821	2.99452588389118	-3.98002352029531	3.5099179668746e-06	0.000108199415748881
Merged-chr1-58724284-4	chr1	58724206	58724406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	-6246.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	6.77384317409599	7.44162741113298	6.95034581203415	6.56582607743667	6.98251853055748	7.30230494685527	6.31659493756795	6.28253445458305	-0.24692128098572	0.42401235169288	0.715897813789117
Merged-chr5-34695716-4	chr5	34695614	34695814	+	956.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019497, intron 5 of 15)	intron (NM_019497, intron 5 of 15)	35335.0	NM_019497	14772.0	Mm.117076	NM_019497	ENSMUSG00000052783	Grk4	A830025H08Rik|GRK|Gprk2l|Gprk4	G protein-coupled receptor kinase 4	protein-coding	5.49494522269636	5.08862295928197	5.52035593717356	5.72339333178749	4.60003745636195	4.74051162461454	4.99737608522249	5.01837129267057	-1.22285862647369	0.000289724298001947	0.00493474175819109
Merged-chr16-30597307-6	chr16	30597183	30597383	+	985.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2440.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	4.68666149945974	5.00080754429897	4.72612694973267	4.55142701185128	4.63371274035905	5.07382430635531	4.49957649040474	4.60336948896582	-0.0598361315779403	0.870888095678608	0.951509543843367
Merged-chr9-107569055-4	chr9	107568958	107569158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010489)	promoter-TSS (NM_010489)	-105.0	NM_010489	15587.0	Mm.4834	NM_010489	ENSMUSG00000010047	Hyal2	AI256841|AU020858|AW555733	hyaluronoglucosaminidase 2	protein-coding	5.78792388738265	6.07660175442893	6.07980941742775	5.7113324380937	5.62128745830447	6.0613476834675	6.08774216242368	6.05533211651622	0.0718729188071642	0.788680255668053	0.91812687233996
Merged-chr17-25332482-4	chr17	25332365	25332565	+	984.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13097.0	NM_031187	100503895.0	Mm.3301	NM_031187	ENSMUSG00000024173	Tpsab1	MMCP-7|Mcp-7|Mcp7|Mcpt7	tryptase alpha/beta 1	protein-coding	5.05777568181333	4.95620047146165	4.7805618569637	4.98664510343978	5.44048472916719	5.23641654849259	5.47890295935378	5.85147163029793	1.03298671898711	0.000834602814489917	0.0116391445400819
Merged-chr15-66768825-4	chr15	66768728	66768928	+	871.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 40 of 47)	intron (NM_009375, intron 40 of 47)	63001.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	4.12441512247569	4.45456624894688	4.26291893034083	4.069790614349	4.07304200964488	4.34508693024649	4.19994984048198	4.17011780980052	-0.0868296100639382	0.830711822450593	0.935017440942484
Merged-chr19-17350631-3	chr19	17350514	17350714	+	831.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	6053.0	NM_173442	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	3.31984179485438	3.25367788611598	3.49889188611619	2.66578264506364	2.75679205620804	2.67445470534256	2.55779741294978	2.64401649781573	-2.66644368620496	0.000835375921860097	0.0116453628558715
Merged-chr9-55277793-3	chr9	55277684	55277884	+	724.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	B1F|SINE|Alu	5841.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	3.70972828746463	3.82429633963278	3.65657385622042	3.99500741706055	3.5982547734004	3.82817638037502	3.58724855866252	3.7081713265082	-0.414326202303627	0.380736721594875	0.683044135154793
Merged-chr10-41665697-4	chr10	41665575	41665775	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 10 of 47)	L1MB2|LINE|L1	50788.0	NM_001358562	75973.0	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	5.53268448946955	5.05149267619749	5.43320117372087	5.00925118255865	5.18386402471193	5.20773675423618	5.37953856328264	5.0987551750839	-0.0707605298510082	0.823776432518436	0.932395927460839
Merged-chr7-27507075-4	chr7	27506977	27507177	+	898.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019412, intron 4 of 5)	intron (NM_019412, intron 4 of 5)	7753.0	NM_019412	19153.0	Mm.10119	NM_019412	ENSMUSG00000053198	Prx	L-Periaxin	periaxin	protein-coding	4.35655081027704	4.42345993984826	4.01253405807741	4.5009669995021	4.54345663009173	4.192374942386	4.49819000674478	4.39696733877028	0.166791302262738	0.675729239174801	0.866921233647741
Merged-chr10-43641357-4	chr10	43641273	43641473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47946.0	NR_033558	414125.0	Mm.244305	NR_033558	ENSMUSG00000075184	F830002L21Rik	F930017D23Rik	RIKEN cDNA F830002L21 gene	ncRNA	5.8729387911368	5.63902507360014	6.0650922431845	5.97579244372851	5.60418445420586	5.5227173500052	5.88877902366789	6.20894557099861	-0.109730209872867	0.699265497041677	0.87873985942593
Merged-chr11-110337645-4	chr11	110337498	110337698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_147219, exon 1 of 39)	5' UTR (NM_147219, exon 1 of 39)	118.0	NM_147219	217265.0	Mm.41942	NM_147219	ENSMUSG00000018800	Abca5	ABC13|B930033A02Rik|mKIAA1888	ATP-binding cassette, sub-family A (ABC1), member 5	protein-coding	5.22627759617694	4.87720710714994	5.16964555887767	4.81056339402898	4.96193759696052	5.15033228690288	4.80885796101972	4.90310725561946	-0.111753921523391	0.735772406852506	0.895684085227797
Merged-chr13-23885731-4	chr13	23885645	23885845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_121611, intron 10 of 12)	intron (NR_121611, intron 10 of 12)	15472.0	NM_001170638	20504.0	Mm.2656	NM_009198	ENSMUSG00000021335	Slc17a1	NAPI-1|Napi1|Npt1	solute carrier family 17 (sodium phosphate), member 1	protein-coding	5.86900918933217	6.04475467608213	5.84569942185575	6.07152702377568	6.34784492967415	6.04639462448526	6.13755632247755	5.76569123605216	0.205424154045962	0.422292155917113	0.714626353223175
Merged-chr5-125158330-1	chr5	125158230	125158430	+	658.0	f0_balb.idr	intron (NM_001253905, intron 1 of 42)	intron (NM_001253905, intron 1 of 42)	20884.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	2.87447101795295	2.85139691886743	2.70315279593853	2.97508185750081	2.47755110807395	2.45549621341256	2.42599408816281	2.35355151531878	-2.5473612756059	0.00152933021317903	0.0189677984394268
Merged-chr16-88478231-4	chr16	88478119	88478319	+	679.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28759.0	NM_181490	239931.0	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding	3.79131190894288	4.4733637403799	4.13096498525103	3.82208941004564	3.88799875531624	3.73380756773409	3.83044296487652	3.84387309276902	-0.700104936024018	0.143147496030903	0.421298144303644
Merged-chr7-43645353-2	chr7	43645253	43645453	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028236, intron 4 of 5)	MTD|LTR|ERVL-MaLR	10614.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	3.11100122073157	2.94885074947101	3.11142719024338	2.88008465958204	2.96941439868882	2.90378496045889	3.04286446089321	3.05275570496283	-0.0610659945414848	0.916694870144916	0.969156405579494
Merged-chr9-123924842-4	chr9	123924740	123924940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	43852.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	8.05355637470762	8.14478252510128	8.21068363260424	7.86900818848841	8.23515538911508	8.34666286245634	8.38126062418688	7.93857897064357	0.213879521470905	0.23147690460068	0.541040114030533
Merged-chr7-128237282-4	chr7	128237176	128237376	+	990.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146205)	promoter-TSS (NM_146205)	-81.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	5.35411445770711	5.71055374946723	4.86676443964476	5.34638953973756	5.22713977130715	5.52844102129873	5.23883032887338	5.16430260345673	-0.116192513549183	0.721702333427834	0.888884104579521
Merged-chr9-99195256-4	chr9	99195142	99195342	+	668.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	41997.0	NM_001244762	623459.0	Mm.260891	NM_001244762	ENSMUSG00000096316	Faiml	EG623459|Gm6432	Fas apoptotic inhibitory molecule like	protein-coding	3.96746209142336	3.81069304179667	3.71003428165641	4.00741019994568	4.00834100727736	3.8850799656833	3.69617024219182	4.09840104041549	0.127209941629216	0.777451026569915	0.913201535037789
Merged-chr3-123267977-4	chr3	123267892	123268092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027135, intron 1 of 22)	CpG	496.0	NM_027135	69608.0	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	6.3566990756001	5.94752163481083	6.83422415099083	6.59373928016072	6.16198265733233	6.45997667726132	6.1307236564843	6.58414684777775	-0.193668607638778	0.478965642452826	0.75480539916642
Merged-chr7-110860308-3	chr7	110860202	110860402	+	993.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053247, intron 1 of 5)	intron (NM_053247, intron 1 of 5)	2651.0	NM_053247	114332.0	Mm.396078	NM_053247	ENSMUSG00000030787	Lyve1	1200012G08Rik|Crsbp-1|Lyve-1|Xlkd1	lymphatic vessel endothelial hyaluronan receptor 1	protein-coding	4.48959815061542	4.48003874352495	3.88381027003144	4.67987016976747	4.42713512884244	3.94554517896099	4.08507816584048	4.0485452343292	-0.667615800387009	0.146087679057644	0.426040681265375
Merged-chr16-17619435-4	chr16	17619332	17619532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029945)	promoter-TSS (NM_029945)	78.0	NM_001164609	77626.0	Mm.34659	NM_029945	ENSMUSG00000005899	Smpd4	4122402O22Rik	sphingomyelin phosphodiesterase 4	protein-coding	5.53241996474548	5.27444525853252	5.83231586981305	5.41005526841702	5.29330654299365	5.00663018754227	5.21662778907614	5.5803570720186	-0.401859304908913	0.197342020021503	0.498743347646305
Merged-chr4-121214705-2	chr4	121214605	121214805	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001346660, intron 1 of 7)	CpG	379.0	NM_001346660	109263.0	Mm.215745	NM_001081013	ENSMUSG00000049878	Rlf	9230110M18Rik|AI195322|MommeD8	rearranged L-myc fusion sequence	protein-coding	4.57286964334023	5.07984064827221	5.29880742564946	4.93363694910675	5.19216680335436	5.41292411062641	5.46027866128141	5.53358471682663	0.749283538689332	0.0208688530314801	0.13174493037053
Merged-chr16-33785505-4	chr16	33785394	33785594	+	928.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8543.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	4.77001229515785	4.52716220318603	4.49116135543576	4.50589526355558	4.97887210605712	4.79186903099074	4.63662309946445	4.65531074071193	0.450602812352055	0.196503242280205	0.497660945922854
Merged-chr13-64398277-4	chr13	64398187	64398387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27767.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	6.19294282722182	6.12534643247806	5.98367325283163	6.3484364903165	5.17014639228821	5.71832829880288	5.45119795621553	5.34501388627191	-1.25088515296909	4.78499292517892e-06	0.000142328044889808
Merged-chr1-151917914-4	chr1	151917840	151918040	+	888.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 4 of 5)	intron (NM_197990, intron 4 of 5)	162566.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	4.58651306416603	4.35407756173183	4.9278441372966	5.26293249114753	4.63394882069229	4.58318820645488	4.60850371522115	5.1650255282685	-0.152230710569043	0.715097209317351	0.886010584897636
Merged-chr14-122876363-4	chr14	122876257	122876457	+	760.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 22 of 24)	intron (NR_153443, intron 22 of 24)	-36673.0	NR_155287	105245866.0	Mm.390754	NM_001039531	ENSMUSG00000075463	Gm15735	4930594M22Rik|F930011C10Rik	predicted gene 15735	ncRNA	3.91585246839717	3.8608565534536	4.11073289541775	4.16161611792997	4.34019763804512	3.67566055076293	4.17872652517175	4.10820354340217	0.215020822150391	0.636080232847323	0.846003230633997
Merged-chr7-25129020-4	chr7	25128900	25129100	+	994.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 1 of 13)	B1_Mus2|SINE|Alu	3460.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	4.77262042814983	5.38817353871071	5.15077363861154	5.28651537039448	5.19813366788439	5.25869577885168	5.36165590921112	5.17953374202865	0.123544916020765	0.693754693227268	0.875550716931276
Merged-chr2-59194848-3	chr2	59194715	59194915	+	819.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	33965.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	3.75814170785811	3.65883038641787	3.90415047637734	4.39516874879079	3.35431808560214	3.45512607557544	3.63737113654989	3.70418968736228	-1.33296320937008	0.0123363267385518	0.0916010224205484
Merged-chr15-80258856-1	chr15	80258756	80258956	+	1000.0	f1_balb.idr	Intergenic	Intergenic	3672.0	NM_009716	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	2.974918999463	3.46768290048569	3.03692237410088	2.54908447602816	2.98425564528768	2.95346579269699	2.76348989656038	3.09402592036402	-0.39985999772677	0.564268244479669	0.80663659571454
Merged-chr1-131364610-4	chr1	131364513	131364713	+	961.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-85050.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	4.64712269102496	5.06297944960078	4.8933904904928	4.19260417144455	4.73256439521697	4.82146642214078	4.05922240390498	4.24029043539586	-0.496563192660146	0.275084489306263	0.586902429840251
Merged-chr2-117358053-4	chr2	117357960	117358160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15183.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	6.95059626566345	7.62183436393838	6.75732275994726	5.77628636447379	7.43574439663698	7.39474345159281	6.95423903255867	6.44882524444309	0.232969585921961	0.682101302144975	0.869682098720609
Merged-chr8-9157652-2	chr8	9157552	9157752	+	841.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12983.0	NR_073360	74688.0	Mm.159298	NR_073360	ENSMUSG00000109215	4930453L07Rik	-	RIKEN cDNA 4930453L07 gene	ncRNA	2.95990899348559	2.87141694245031	3.02210136628448	3.11011924655041	3.11871180653206	3.06764650115025	3.06967533058883	3.07953124598003	0.340316242977614	0.552592873348958	0.799841551409336
Merged-chr7-13038833-4	chr7	13038743	13038943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168469)	promoter-TSS (NM_001168469)	-568.0	NM_001168469	22192.0	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	6.12022245224114	6.12814219283485	5.98941417911862	6.07581313593227	6.08860445411509	6.16702934756152	6.73897164749048	6.36254269619917	0.425227593267841	0.0903332526363732	0.328253552654911
Merged-chr2-160667491-4	chr2	160667378	160667578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009408, intron 2 of 20)	MLT1F|LTR|ERVL-MaLR	21581.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	7.15359944760944	6.89327530042489	6.97843874848775	7.33807843428372	6.99155260282801	6.65164660629481	6.61423533288646	7.10518061991968	-0.343962030538569	0.124896039232389	0.392245916455235
Merged-chr11-53560150-3	chr11	53560051	53560251	+	995.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7218.0	NM_008443	16568.0	Mm.88694	NM_008443	ENSMUSG00000018395	Kif3a	Kif3|Kifl|Kns3	kinesin family member 3A	protein-coding	4.78846897434759	5.39096929483018	5.20107830532794	4.5638416297587	4.35230032316734	4.48165385037382	4.87282167382808	4.49385445305172	-0.956080153543213	0.018196821933393	0.120162500083216
Merged-chr13-46737683-3	chr13	46737621	46737821	+	776.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9872.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	3.19302748748024	3.13361371431743	3.19343986297769	2.9861121867756	3.19428086759576	3.2446742229229	3.06163370807157	3.45138593691433	0.484260998627677	0.382118018139565	0.684238214631303
Merged-chr11-116581018-4	chr11	116580974	116581174	+	896.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_173755, exon 1 of 18)	exon (NM_173755, exon 1 of 18)	373.0	NM_173755	217342.0	Mm.243950	NM_173755	ENSMUSG00000020802	Ube2o	9630022H21|B230113M03Rik|E2-230K|mKIAA1734	ubiquitin-conjugating enzyme E2O	protein-coding	3.97911950823068	3.87205589899581	4.16710076700796	4.08221131489149	4.29563878691028	3.75500629187742	4.05920026212764	4.28862489074734	0.246658686687821	0.572959010173669	0.811530413203955
Merged-chr12-117478220-4	chr12	117478188	117478388	+	810.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-38191.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	3.03850457345347	3.19713569016643	3.10193710986499	2.94706160769688	3.03435258743043	3.38866398453076	3.26123656215753	3.16046407585888	0.564366153967539	0.31404697954958	0.62606217497156
Merged-chr9-116138862-5	chr9	116138678	116138878	+	798.546692	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	36585.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	3.13371122955123	3.16913179931543	3.13411355957024	3.23190311491518	3.04465509273691	3.18414223213564	2.87201010888158	3.07352937151614	-0.50540760847723	0.376952859200257	0.679578733727145
Merged-chr17-56139958-3	chr17	56139847	56140047	+	884.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130456, intron 1 of 16)	CpG	396.0	NM_001130456	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	3.1046181039232	3.27471919557998	3.40050435991667	3.1042589301653	3.57166589886542	3.51376264094979	3.277640516212	3.22918848745651	0.700276565316859	0.194231768109849	0.494645726487711
Merged-chr7-140881822-4	chr7	140881694	140881894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177804)	promoter-TSS (NM_001177804)	75.0	NM_001127351	64384.0	Mm.29760	NM_022433	ENSMUSG00000025486	Sirt3	2310003L23Rik|AI848213|Sir2l3	sirtuin 3	protein-coding	5.82894535086474	5.86424724588525	5.24822948157902	5.72256059764551	5.89880535919575	5.95730701038498	5.97348655147552	5.8716765757198	0.374616539067006	0.161519518696658	0.450360303247782
Merged-chr1-71730381-3	chr1	71730288	71730488	+	945.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77053.0	NR_040308	100042814.0	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	Gm15456	apolipoprotein L 7d	ncRNA	4.01869819417249	4.06141888442477	4.15684325883607	4.08649497860667	4.09855426831454	4.14212823845975	3.7953559083355	4.01691297112103	-0.157994358020119	0.706030428265913	0.881879743016467
Merged-chr8-110847093-4	chr8	110847022	110847222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133953)	promoter-TSS (NM_133953)	98.0	NM_133973	102339.0	Mm.272930	NM_133973	ENSMUSG00000031753	Cog4	AW554810|D8Ertd515e	component of oligomeric golgi complex 4	protein-coding	5.18664193410524	5.1333278324524	5.02582346034805	5.12313893447851	4.93537329769797	5.05589764124217	4.93161438408168	5.27133912966468	-0.131675162941043	0.668411904804282	0.862948051435654
Merged-chr2-151973043-3	chr2	151972952	151973152	+	869.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146127, intron 1 of 1)	intron (NM_146127, intron 1 of 1)	342.0	NM_001289151	73847.0	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	3.66422476772096	3.73160942651472	3.89793617332839	3.40164565479482	3.50766286110163	3.49452926220573	3.4880374722095	3.6104413880282	-0.4789781400747	0.342512084120303	0.651536445694174
Merged-chr5-38560787-4	chr5	38560695	38560895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011715, intron 2 of 14)	intron (NM_011715, intron 2 of 14)	800.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	7.17186008318845	7.27950325174974	7.02822374556521	7.24067157427109	7.32660769389435	7.3499851893403	7.25626332294304	7.17942377468348	0.123920961939351	0.494862130399594	0.765380871135718
Merged-chr19-5953541-4	chr19	5953454	5953654	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 6 of 17)	intron (NM_001164057, intron 6 of 17)	10652.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	5.11091961474608	6.13312644052669	5.40714249189477	4.61294602338922	5.495844045825	5.77199180922803	5.59364467169298	5.214230359028	0.156698706293029	0.700757227028774	0.879339000309196
Merged-chr12-80644244-4	chr12	80644122	80644322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347409)	promoter-TSS (NM_001347409)	7.0	NM_026244	328133.0	Mm.238279	NM_026244	ENSMUSG00000048833	Slc39a9	2010002A02Rik|2610511I23Rik|4833420E20Rik|AW209151	solute carrier family 39 (zinc transporter), member 9	protein-coding	6.53489353190875	6.44416963663255	5.70421327061081	6.39216750902007	6.55483502570988	6.59715506424321	6.5332983641412	6.15111310740084	0.236192949373486	0.376374962392563	0.679172347306585
Merged-chr6-17655319-3	chr6	17655198	17655398	+	854.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 4 of 9)	intron (NM_007604, intron 4 of 9)	18288.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	3.33152708971131	3.44859661125257	3.54652415973088	3.65456093132473	3.04183679198528	2.95447720628777	3.62502700291478	3.33021475521137	-0.850810836005914	0.157051330422457	0.443408387499825
Merged-chr17-70979757-4	chr17	70979636	70979836	+	805.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	B4A|SINE|B4	10780.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	3.64954742642467	3.74149950403111	3.59333666502054	3.62055316997232	3.7331448001316	3.87653106265008	3.52138010455264	4.10807013161029	0.514745454799185	0.278161091732584	0.590299285901839
Merged-chr17-45731427-3	chr17	45731323	45731523	+	786.188904	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2421.0	NM_028164	72240.0	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	3.62322118045812	3.4825758264814	3.35386618641424	3.76014979767907	3.73266224726955	3.40429512276756	3.21803791780812	3.22659438634113	-0.485202503937612	0.38618198860972	0.687523230791116
Merged-chr19-41372564-4	chr19	41372456	41372656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	12514.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	6.09015174941649	6.19298213569363	6.02898422175869	6.36758870828912	6.02604790931534	5.78307725101987	5.91064138664249	5.73987643734125	-0.489766386817607	0.0483249813357675	0.226927322248412
Merged-chr12-12225841-4	chr12	12225735	12225935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36304.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	7.56329175506009	7.53197161190541	7.82603630237589	7.82892909679666	8.13440951165948	8.08454731796701	7.89708428721976	8.05581298999517	0.449638968014299	0.00964125723082097	0.0769344224700231
Merged-chr12-73889764-4	chr12	73889678	73889878	+	889.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11546.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	4.53124053339269	4.63155815286737	4.98108175235958	5.45155609597273	4.64445462355744	4.47098076147415	4.71609570777	4.52909794983869	-0.782861584233638	0.0530786581125548	0.240274356049567
Merged-chr6-90604788-4	chr6	90604682	90604882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027868)	promoter-TSS (NM_027868)	-98.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	8.00085490619732	8.3797544365228	8.52944587297088	8.18576680979954	8.46431852541565	8.58839927677344	8.65748356783777	8.43587498915352	0.317863827611698	0.0688083607389443	0.280317668786476
Merged-chr2-34609689-4	chr2	34609601	34609801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290625, intron 10 of 11)	intron (NM_001290625, intron 10 of 11)	145531.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	6.44947081676448	6.74560043551817	6.32339961669379	6.24588633719136	6.70787490004226	6.44220152411129	6.46818828752175	6.62293508347689	0.179555457916834	0.436764950853904	0.725278104435332
Merged-chr3-90117881-3	chr3	90117782	90117982	+	726.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029937, intron 3 of 39)	RSINE1|SINE|B4	13750.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	2.96237988043955	3.06008011678429	2.96274134452619	3.0956774591377	2.76162488711471	2.94152927111065	2.8910937007559	3.02042356757349	-0.545120623563673	0.363361702188733	0.668503886726201
Merged-chr1-134196015-2	chr1	134195915	134196115	+	876.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357515, intron 3 of 10)	intron (NM_001357515, intron 3 of 10)	2567.0	NM_016749	53311.0	Mm.379067	NM_016749	ENSMUSG00000042451	Mybph	AI385643|MyBP-H	myosin binding protein H	protein-coding	2.92066449562764	2.82589143740666	3.09188682532609	2.9218582102682	2.86728809700955	2.82934374383895	3.02535123224998	2.79196633995408	-0.262311266839152	0.66531562698098	0.86134534655382
Merged-chr2-22784384-2	chr2	22784284	22784484	+	666.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	10057.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	3.1989788634784	2.98235440872346	2.88556310878052	3.06915621318821	3.11586440949406	3.12959846345433	3.29228640076693	3.2521392361429	0.617037110237252	0.272788772971307	0.584183037393596
Merged-chr6-113660636-4	chr6	113660556	113660756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	ORR1D2|LTR|ERVL-MaLR	22189.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	7.64769139386865	7.55214590842423	7.76152974593243	7.62838922339612	7.63393902770656	7.66498957419116	7.82671390182608	7.33007357957101	-0.0273002248945903	0.881327631221617	0.955384724180766
Merged-chr4-151044800-4	chr4	151044695	151044895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289878)	promoter-TSS (NM_001289878)	-130.0	NM_001289878	18628.0	Mm.121361	NM_011067	ENSMUSG00000028957	Per3	2810049O06Rik|mPer3	period circadian clock 3	protein-coding	8.59058993375038	8.74824319463578	8.56400876215058	8.47859344173576	8.54770763359842	8.60763345022125	8.66663417525453	8.34877832095829	-0.0611083194503704	0.699285770486561	0.87873985942593
Merged-chr5-123662241-4	chr5	123662142	123662342	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	22119.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	5.30556034888453	5.32684908245419	5.30647486352179	5.24858143897538	4.87249425322415	4.95595892688302	5.22109960860224	5.38681993318138	-0.328515796498667	0.287180790816624	0.598940534722274
Merged-chr2-163699662-4	chr2	163699558	163699758	+	758.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011106, intron 1 of 3)	intron (NM_011106, intron 1 of 3)	5621.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	3.89654151074864	3.88486196534003	4.13590740831638	4.48073160356106	3.93372988228324	4.01851807781533	3.98110881892565	3.78570330871963	-0.562365664471228	0.223218282643524	0.531226525135692
Merged-chr10-82935183-4	chr10	82935083	82935283	+	822.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50314.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	4.57698169192677	4.34050489225266	4.19985801104558	4.06675359509904	4.2614816915349	4.05560591399814	4.40286247030387	4.77498871615674	0.236866995908704	0.57715159519772	0.813924639099529
Merged-chr1-155028882-4	chr1	155028779	155028979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54385.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	5.51910958387416	5.84222126515601	5.63196579507509	5.83265513746319	5.81566059209483	5.69683369180691	5.77734933187337	5.80271968853891	0.080921477878366	0.753208437426611	0.902782193910834
Merged-chr12-16877704-4	chr12	16877602	16877802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17276.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	6.17241674170912	6.35039016062845	6.19412143672197	6.01672193378152	6.50250122858533	6.62732406759569	6.54511301954609	6.4307454798078	0.520557203679213	0.0184769819309289	0.121441664951291
Merged-chr16-12091059-4	chr16	12090979	12091179	+	968.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028277, intron 2 of 4)	Tigger9b|DNA|TcMar-Tigger	106966.0	NM_001174086	72555.0	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	4.1266752785656	4.48051159052095	4.61676217642295	4.87881979473051	4.56102690460465	4.07961987591926	4.47993794588747	4.49775071337741	-0.329743860269546	0.433807680325311	0.723256357491443
Merged-chr10-62501126-4	chr10	62501025	62501225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	6632.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	5.81181442459462	6.29501319995512	5.88491419842058	5.53966831626287	6.4335121509158	5.88775278995892	5.85486591197792	5.75832612816943	0.190687085327915	0.532289112317051	0.788044784116818
Merged-chr10-94464070-3	chr10	94463945	94464145	+	795.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-50812.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	3.0830350464828	2.86926344330158	3.24097373969633	2.98646103767904	2.90920419362351	2.80093049270438	2.7607943282262	3.081744300834	-0.659282140513295	0.289243666531484	0.601252115531934
Merged-chr13-41068305-4	chr13	41068198	41068398	+	786.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145802, intron 2 of 11)	MLT1B|LTR|ERVL-MaLR	2167.0	NM_008547	17152.0	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	3.75524250664781	3.42257558655598	3.60022435910415	3.61761598679778	3.78728686645539	3.60043571834116	3.83273380973183	3.65215731306496	0.37625544961766	0.425388643675157	0.716928026427854
Merged-chr12-69374607-3	chr12	69374511	69374711	+	922.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007481, exon 2 of 2)	3' UTR (NM_007481, exon 2 of 2)	2461.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	4.25590130951864	3.88596721866144	4.00971292603462	3.84621467478495	3.74868488094132	3.87949760671144	3.63069768416394	3.86308701521608	-0.622657400909257	0.17396353952428	0.468213348974044
Merged-chr7-19877044-6	chr7	19876978	19877178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177036, exon 7 of 7)	3' UTR (NM_177036, exon 7 of 7)	10887.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	5.75413225015537	5.9766367411755	5.85846377624292	5.1976272848875	6.31857055120182	6.58722135122144	6.17210767808271	6.57275679895248	1.10609311731975	9.50909269957743e-05	0.00194776319212438
Merged-chr2-163932368-3	chr2	163932260	163932460	+	995.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13677.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	4.91960258126708	4.56563798294969	5.23284675422475	5.47146560656918	4.03844299062895	4.22397896609926	4.4391055752288	4.08965945673257	-2.01339648374784	2.11679194450043e-06	6.87368311211661e-05
Merged-chr10-51529046-4	chr10	51528958	51529158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS4-int|LTR|ERV1	38160.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	6.19940601930536	5.846620931412	6.68672587940003	6.47911320913616	6.46443700064563	6.45651073948787	6.14822971464607	6.70940737898377	0.172476916760477	0.524830419948571	0.78311175823405
Merged-chr17-46705081-4	chr17	46704993	46705193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009358)	promoter-TSS (NM_009358)	-67.0	NM_001357684	21770.0	Mm.295009	NM_009358	ENSMUSG00000059409	Ppp2r5d	B'delta|TEG-271|Tex271	protein phosphatase 2, regulatory subunit B', delta	protein-coding	8.49710581326685	8.47641357155747	8.34751306640259	8.34926335322085	8.14334536873757	8.16029664159374	8.16708482329214	8.13889399508162	-0.337640519311166	0.0240109995407832	0.14455543739435
Merged-chr10-68446535-2	chr10	68446435	68446635	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028491, intron 5 of 7)	intron (NM_028491, intron 5 of 7)	95340.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	3.06705628831043	3.41994146721725	3.25770143662871	3.0976751643549	3.04827797563035	3.59212321315102	3.45964124489904	3.19561280667654	0.438398257337642	0.442167459115634	0.728953187628121
Merged-chr10-85829436-1	chr10	85829336	85829536	+	583.0	f0_balb.idr	Intergenic	CpG	-42395.0	NM_133993	103136.0	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog, endonuclein	protein-coding	3.02077623942274	3.0904935350698	2.96404342447407	3.37291534344725	2.66501221053542	2.65997499960278	2.69895883300876	2.63242796409287	-2.36935964079693	0.000968110900294387	0.0130956225336477
Merged-chr11-77606980-4	chr11	77606877	77607077	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144825, intron 1 of 19)	intron (NM_144825, intron 1 of 19)	838.0	NM_144825	216965.0	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	4.83726605298523	5.59315492744193	4.98715688004769	4.68352571886516	5.30954265502234	5.22957319399918	5.12811071114354	4.83494392645876	0.128863170879379	0.731732260679586	0.893763558604771
Merged-chr5-147957222-4	chr5	147957121	147957321	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029920)	promoter-TSS (NM_029920)	-99.0	NM_001359503	77521.0	Mm.244177	NM_029920	ENSMUSG00000029651	Mtus2	5730592G18Rik|A730013O20Rik|AU067634|C130038G02Rik|Cazip|Gm763|mKIAA0774	microtubule associated tumor suppressor candidate 2	protein-coding	5.24450311008636	5.19278372417284	5.14853483995827	5.1001294837841	5.49141694634999	5.0693724135074	5.44476297472581	5.41556789865086	0.378789823378579	0.194916187072733	0.495657149785646
Merged-chr7-110646035-2	chr7	110645935	110646135	+	726.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18378.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	2.7516018681365	2.8529859301726	3.06601996670802	2.84100502761834	3.05149407273444	2.99434811094742	3.05384153639552	2.94781352839275	0.577235585867567	0.32727308936367	0.638813448906288
Merged-chr9-66347556-4	chr9	66347460	66347660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2890.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	6.48123055250995	6.56999496694522	6.20104124665846	6.43847320023142	6.59370185892217	6.4398087728253	6.5458229808758	6.67912035827394	0.19969391304396	0.354019146821563	0.660831376621657
Merged-chr7-104505898-3	chr7	104505812	104506012	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199146, intron 1 of 7)	Lx4A|LINE|L1	1937.0	NM_199146	209387.0	Mm.277377	NM_199146	ENSMUSG00000057596	Trim30d	AI451617|TRIM30-3|Trim79	tripartite motif-containing 30D	protein-coding	6.62227269984482	6.69012024346184	6.35244596585042	6.16680637498631	3.79271532331846	4.09427452964731	4.00327442767744	4.09215127336662	-6.46497055950537	3.39400696171793e-20	1.17272825984525e-17
Merged-chr5-140116186-4	chr5	140116078	140116278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359025, intron 14 of 17)	intron (NM_001359025, intron 14 of 17)	58740.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	7.41203755542655	7.39097707039695	7.53258160442596	7.47099371421514	7.21323650557709	7.33525957541104	7.33755283228584	7.05479013078244	-0.288631782231626	0.107336442109249	0.361382260156614
Merged-chr1-64189725-4	chr1	64189640	64189840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-68351.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	5.71141712559706	5.32675509704838	5.66374146021964	5.41282732797918	5.7525759096384	5.46943780080082	5.61016023845149	5.63469055913863	0.175319122480486	0.524176028918221	0.782789831107843
Merged-chr3-36571543-3	chr3	36571445	36571645	+	875.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009828, intron 2 of 8)	CpG	1493.0	NM_009828	12428.0	Mm.4189	NM_009828	ENSMUSG00000027715	Ccna2	AA408589|Ccn-1|Ccn1|Ccna|CycA2|Cyca	cyclin A2	protein-coding	3.55139051045107	3.37500173172497	3.65275013573692	3.48354473449574	3.7136496525044	3.43434626874235	3.31200107321644	3.60132968272478	0.0566887145115107	0.911113559013022	0.966904162861598
Merged-chr6-4618121-4	chr6	4618022	4618222	+	950.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145398, intron 5 of 17)	intron (NM_145398, intron 5 of 17)	17056.0	NM_145398	213819.0	Mm.270703	NM_145398	ENSMUSG00000015189	Casd1	Cas1|Cast1|SOAT	CAS1 domain containing 1	protein-coding	4.68598796530063	4.68869577577351	4.80273707137963	5.40424125766667	4.68813127267301	4.39141067809769	5.04317214971826	4.64264809181352	-0.488134331722035	0.224592207496161	0.533070417065232
Merged-chr7-125551673-2	chr7	125551573	125551773	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008700)	promoter-TSS (NM_001008700)	-609.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	3.28408546408541	3.06274496653007	3.22427703410992	3.1485960008471	3.36790859435021	3.39874162920375	3.21271560885199	3.72529568267239	0.928037048971045	0.084869717188181	0.317004230056502
Merged-chr19-6363646-4	chr19	6363515	6363715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011750)	promoter-TSS (NM_011750)	-75.0	NM_011750	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	8.84366053042702	8.99919160107392	8.90737290733045	8.60921209993833	8.99391782395089	9.34249149165014	9.19866246133036	9.01781332811599	0.372790553029612	0.0243753336550693	0.145885131946034
Merged-chr8-117364995-4	chr8	117364895	117365095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	15825.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	7.27686344684795	7.08031066828512	7.41394594332332	7.77448737776646	6.95730957109299	6.49057663776694	6.95602015928486	6.85065424563546	-0.808477742203955	0.000544276970735556	0.00826564764241224
Merged-chr7-142393285-4	chr7	142393178	142393378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5408.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	7.35066930709423	7.3506909725758	7.86917431440828	7.72531090096529	7.53851777153765	7.53916333460351	7.5705130847502	7.60261913430401	-0.0478776194414592	0.806037328973348	0.925322678935546
Merged-chr5-121900734-3	chr5	121900635	121900835	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007804, intron 4 of 22)	intron (NM_007804, intron 4 of 22)	51738.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	3.3459284513817	3.2736060647299	3.77150810213777	3.65449384296652	3.04047498702498	3.06786174900235	3.09036566607045	3.22732296984162	-1.62529632446774	0.00557658211319289	0.0514765319977897
Merged-chr4-75317346-4	chr4	75317245	75317445	+	886.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-39053.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	4.14229170144107	3.69922256663008	4.56504599444947	3.98815689763266	4.14888987008879	3.89886969319902	4.25303661561493	4.04586484443193	-0.0862395860004123	0.853725972932389	0.944903737664624
Merged-chr6-146634458-4	chr6	146634369	146634569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026281, exon 1 of 12)	5' UTR (NM_026281, exon 1 of 12)	123.0	NM_026281	67623.0	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	5.82067459910082	6.0021747876024	5.54459364599111	5.50122466213463	5.53824391014136	5.92588684249011	5.72265301257411	5.25888634989979	-0.162626096784225	0.586261729301501	0.81856236198936
Merged-chr13-9760219-4	chr13	9760125	9760325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347474, intron 1 of 14)	intron (NM_001347474, intron 1 of 14)	3585.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	7.82590610143311	7.86305727685448	8.37755814474638	8.66513587634035	8.12649675760903	8.23226484380743	8.26394155124198	8.28644267975688	-0.0184000123700123	0.933672754331511	0.976099628478877
Merged-chr11-114960511-3	chr11	114960412	114960612	+	868.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199225)	promoter-TSS (NM_199225)	-95.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	4.03092611989204	3.69675422388422	3.69128160998559	3.61342515287291	3.74371708193299	3.6306609329103	3.73056499755599	4.18843749304471	0.236272674100274	0.624291409078337	0.839373596652568
Merged-chr16-90934312-2	chr16	90934212	90934412	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026502, intron 1 of 6)	CpG	537.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	3.75617621119413	3.56431588756143	3.43826009586114	3.67244094300599	3.53361118460773	3.55272608933622	3.78592146691491	3.43656101553115	-0.107442373877257	0.826881034124163	0.933582996245152
Merged-chr4-101721948-4	chr4	101721849	101722049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146146, intron 1 of 18)	L2a|LINE|L2	4542.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	6.2583645576464	5.47272589683369	6.47922373725642	6.42592095441731	6.13864223413873	5.83707354123635	6.33299093986163	6.30918742658842	-0.0759770998737409	0.801712030102222	0.923502404690673
Merged-chr7-101618516-4	chr7	101618436	101618636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-37375.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	5.91019365423261	6.01743629809467	5.7136047326205	6.02396268300657	6.11166218273148	5.62875059541337	5.76199210295954	6.36190846137566	0.119301985828505	0.66654930923495	0.862043957374757
Merged-chr8-82863304-4	chr8	82863215	82863415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177378)	promoter-TSS (NM_177378)	-41.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	5.16189178141924	4.98590558618909	5.39599681349587	4.9285401639265	5.00223914766716	5.20357280719338	5.39486938563388	5.19080954763875	0.157136557291182	0.620236684440082	0.837084318577183
Merged-chr5-66111102-2	chr5	66111002	66111202	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-12923.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	3.13991246232527	3.16134224615429	3.32758798466078	3.54573996757968	3.25507619018284	3.38091138544592	3.74823945110668	3.32585143911816	0.424726537546935	0.45253393959117	0.736890776226601
Merged-chr2-178013495-4	chr2	178013404	178013604	+	700.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-9780.0	NM_001177400	626848.0	Mm.422604	NM_001177399	ENSMUSG00000074519	Zfp971	Etohi1	zinc finger protein 971	protein-coding	3.80866090301357	4.25885937408937	4.26144049286622	3.78335063778952	4.43692101645905	4.25323548011404	4.15511453754557	4.17105667800587	0.57621322108575	0.18366266396199	0.480761104819123
Merged-chr16-14361013-4	chr16	14360920	14361120	+	834.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008576)	promoter-TSS (NM_008576)	-538.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	3.94552338786272	4.19599208335448	3.65084640241587	3.85237981344804	4.2145411548574	4.40053323129722	4.16854921973012	4.31031355465595	0.897747163004642	0.0352894215039549	0.1863263654944
Merged-chr8-68277158-3	chr8	68277096	68277296	+	739.291687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028182, intron 1 of 8)	intron (NM_028182, intron 1 of 8)	668.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	3.19269298382645	3.49160176357733	3.06475549756276	3.03932038383853	3.27967239823601	3.30519523336677	3.29705059464671	3.41520910500429	0.438218050552876	0.426525970322487	0.717943860798456
Merged-chr19-10979361-4	chr19	10979302	10979502	+	923.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034898, intron 6 of 6)	intron (NM_001034898, intron 6 of 6)	-4732.0	NM_023529	69826.0	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding	4.68427893358689	4.56817038808035	4.36670445484574	4.15877728823053	4.57590712458036	4.49675586156437	4.04746588614942	4.75023510913739	0.103229756537368	0.803216482617834	0.924024146497742
Merged-chr8-80738467-4	chr8	80738397	80738597	+	962.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053124, intron 1 of 23)	CpG	962.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	4.55223235686403	5.16353560867005	5.012890821009	4.61887033573355	5.06117860207093	4.63943668923281	4.95595033059533	4.90913100285475	0.105604685486162	0.770240472004391	0.910083821330452
Merged-chr8-94180169-4	chr8	94180087	94180287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013602, exon 3 of 3)	exon (NM_013602, exon 3 of 3)	1098.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	6.46307065705199	6.15782140156312	6.54672016774812	6.68491444666519	6.81852901517798	6.29130245997262	6.44801128811528	6.50971077759369	0.0829405082417664	0.7339098845632	0.894686779360896
Merged-chr6-145277068-4	chr6	145276971	145277171	+	960.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26519.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	4.98724971142474	4.63893000502219	4.88798495176664	4.90601213790557	4.7205594438021	4.66224825865567	4.82958931515336	4.91891310910136	-0.158610194947176	0.634639658385088	0.845322747017014
Merged-chr3-9128584-3	chr3	9128466	9128666	+	952.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66602.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	4.53858877990964	4.47345763019602	4.41882329533688	4.8384409847479	4.00544182904815	4.50546383222196	4.3124262727484	4.0820069720212	-0.854522061387445	0.0362861772901987	0.189439182436486
Merged-chr10-82178572-5	chr10	82178434	82178634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	50521.0	NM_001163064	216177.0	Mm.482395	NM_001163064	ENSMUSG00000078435	AU041133	-	expressed sequence AU041133	protein-coding	6.33332826075742	6.17131742413227	6.96754726496458	6.36019506886893	6.36086178898052	6.67245311294988	6.70572702733329	6.70729474574795	0.183160179989209	0.476581873916711	0.753093932967774
Merged-chr4-101689821-3	chr4	101689724	101689924	+	714.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27583.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	3.59699937631385	3.27385515936701	3.28905848972487	3.20078093198783	3.28289017343599	3.21237622548128	3.38667304860709	3.22794518904408	-0.220230654530352	0.68338224392928	0.870309436951249
Merged-chr6-71125349-2	chr6	71125249	71125449	+	980.4166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19031.0	NM_001033929	232078.0	Mm.37547	NM_178413	ENSMUSG00000054474	Thnsl2	BC051244|TSH2	threonine synthase-like 2 (bacterial)	protein-coding	3.63178475634206	3.34489123986003	3.35342874973706	3.03635971028709	3.57214393020575	3.33842847692867	3.66510421728613	3.89986271032085	0.947681046329911	0.0824240514635827	0.311702346144212
Merged-chr2-120464935-3	chr2	120464822	120465022	+	936.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040608, intron 1 of 4)	ID4_|SINE|ID	1329.0	NM_007601	12335.0	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	4.31796712974813	4.28002276820147	4.55236666470734	4.7937337265709	3.5562492202449	4.26266283778261	4.16503580485624	3.9197251440442	-1.30938127249267	0.00513060000857318	0.0484017200808787
Merged-chr11-54555027-2	chr11	54554927	54555127	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 4 of 28)	intron (NM_001252494, intron 4 of 28)	32182.0	NM_001252496	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	3.36048249931115	3.79601737970253	3.16481148752338	3.5794278010672	3.33980377022661	3.53547164805044	3.34893302197746	3.7715080577651	0.0217378628607993	0.968745012762062	0.988762939668968
Merged-chr1-88094587-4	chr1	88094396	88094596	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201642)	promoter-TSS (NM_201642)	-505.0	NM_201642	394432.0	Mm.300095	NM_201642	ENSMUSG00000090124	Ugt1a7c	A10'|A13|Ugt1a10	UDP glucuronosyltransferase 1 family, polypeptide A7C	protein-coding	5.44987198060394	5.88888124264591	5.76295785818407	4.09803716767354	5.78885348869852	5.81828845013257	5.94345225644963	5.38672327506261	0.431542253835137	0.496157451586748	0.766143432252637
Merged-chr5-140765641-4	chr5	140765540	140765740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 2 of 3)	intron (NM_010302, intron 2 of 3)	41513.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	6.1482388176165	5.61728736743305	5.93968004592245	6.0629725183789	5.51918774608167	5.45230312851103	5.17415423359081	5.57769841949328	-0.863018942205035	0.00230016252720049	0.0260539892621903
Merged-chr9-21073550-4	chr9	21073449	21073649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039824)	promoter-TSS (NM_001039824)	-35.0	NM_001039824	68165.0	Mm.490294	NM_001039824	ENSMUSG00000079677	Fdx1l	B230118G17Rik|Fdx2	ferredoxin 1-like	protein-coding	6.77211689795471	6.73944840384292	6.65112986481007	6.65382400325538	7.06152944220262	7.07425529327003	6.9393452049678	7.05355710713285	0.466460203223759	0.0138526289072382	0.0992667142845371
Merged-chr15-78935076-4	chr15	78934937	78935137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133800, exon 1 of 6)	exon (NM_133800, exon 1 of 6)	104.0	NM_133800	97961.0	Mm.157216	NM_133800	ENSMUSG00000033099	Nol12	C78541|Nop25	nucleolar protein 12	protein-coding	5.86569932310545	6.01947005942294	5.82361361128556	5.41527653687716	5.08887974233223	5.5591197475273	5.11818857410841	5.60473908101662	-0.744392473499476	0.0182752248825439	0.120565083810648
Merged-chr2-4562542-2	chr2	4562442	4562642	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 1 of 11)	intron (NM_001177844, intron 1 of 11)	2788.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	3.15776956754064	2.59288342540567	2.79860712432752	2.69617261094924	3.00544265216567	2.975518712871	3.14438807204727	2.98917961798594	0.898505859757573	0.157779752251102	0.444512368315107
Merged-chr10-79909307-4	chr10	79909191	79909391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359629)	promoter-TSS (NM_001359629)	-353.0	NM_001359629	216154.0	Mm.260089	NM_198107	ENSMUSG00000013833	Med16	95kDa|A630083L04|DRIP92|Thrap5|Trap95	mediator complex subunit 16	protein-coding	6.56356813410906	6.42937280197157	6.54936915818895	5.69913949452304	6.24683483129833	6.43139067510185	6.31603460251263	6.61961300957254	0.102204065002217	0.716701103888246	0.886676884514573
Merged-chr8-94373023-1	chr8	94372923	94373123	+	708.0	f0_balb.idr	Intergenic	RLTR33|LTR|ERVK	-13406.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	3.8796931067014	3.58752306796318	3.96467367241947	3.03741320794162	3.48155918311272	3.65117350090622	3.62548823553861	3.27948050486921	-0.46433657539297	0.42939267475973	0.720316306396806
Merged-chr2-34977375-4	chr2	34977278	34977478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15606.0	NM_001326601	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	6.65266254677269	7.4044873452177	6.52297003894724	6.66783128628415	6.76625510009372	6.84616016970639	6.48957741500809	6.44746697343006	-0.303774768212666	0.256164019045335	0.567777539347653
Merged-chr13-34162967-4	chr13	34162805	34163005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101430)	promoter-TSS (NM_001101430)	-59.0	NM_001101430	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	6.83931709976785	6.87268501749171	6.66904866697716	6.48053279224215	6.57380611339676	6.91947544244136	6.69458791329181	6.73856735852366	0.02481908435045	0.909216093568758	0.966244025263977
Merged-chr12-80946163-4	chr12	80946077	80946277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045057)	promoter-TSS (NR_045057)	678.0	NM_001347415	20384.0	Mm.43331	NM_009159	ENSMUSG00000021134	Srsf5	Sfrs5	serine/arginine-rich splicing factor 5	protein-coding	8.67174644844015	8.97181587671172	8.6282322874628	8.52614675723615	8.81527736445641	8.73534427937391	8.7788905039585	8.64086594691752	0.0467746283709649	0.775057891216535	0.91224145329603
Merged-chr2-125859117-4	chr2	125859021	125859221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009939)	promoter-TSS (NM_009939)	12.0	NM_175154	69976.0	Mm.20216	NM_175154	ENSMUSG00000027207	Galk2	2810017M24Rik|AI327030|Gk2	galactokinase 2	protein-coding	7.57764602200237	7.66597926127605	7.29016446015456	7.59091584648269	7.83254387546582	7.57502664113728	7.82587228173138	7.65959915866642	0.247951024485283	0.169116325736492	0.46161486940974
Merged-chr11-95414951-4	chr11	95414756	95414956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359107, intron 1 of 9)	intron (NM_001359107, intron 1 of 9)	773.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	6.31701047770181	6.61428384992435	6.63879256837861	5.73740795023433	6.33806861277471	6.88660939131835	6.60476416528252	6.76131880715104	0.43227693585411	0.127946882481756	0.398030688298095
Merged-chr15-25830637-4	chr15	25830550	25830750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12648.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	7.34746939464174	7.39574166499755	7.78360797725559	7.47260924636178	7.54123927173299	7.39492665663909	7.58989464572104	7.30134204608073	-0.0575103460730699	0.762855633523522	0.907015239695587
Merged-chr15-59082145-4	chr15	59082042	59082242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146180)	promoter-TSS (NM_001146180)	-116.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	6.03696727638506	5.99645166788092	5.94697251719913	6.27031008848587	6.50890889496445	6.35839095676553	6.31550319813909	5.81906474707821	0.307050098388314	0.238430489666624	0.548836356743826
Merged-chr3-101006443-3	chr3	101006320	101006520	+	622.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167906, intron 7 of 8)	MTEa|LTR|ERVL-MaLR	23075.0	NM_001167906	630146.0	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	3.3290878530756	2.76260834975595	3.32960943951145	2.71010141356786	2.82392018815173	3.15895062622927	3.20939152304179	3.2211638275295	0.187363889597492	0.776686932411969	0.912997079570477
Merged-chr19-46330193-4	chr19	46330113	46330313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133694, exon 4 of 4)	exon (NM_133694, exon 4 of 4)	2029.0	NM_133694	68431.0	Mm.19973	NM_133694	ENSMUSG00000025226	Fbxl15	0710008C12Rik|Fbxo37	F-box and leucine-rich repeat protein 15	protein-coding	6.2527012643573	6.47758326794058	6.04230389200877	6.38928430540294	6.33230513144272	6.55869878825641	6.52952035096598	6.24933657737734	0.162070306841884	0.484439178166098	0.758525197917074
Merged-chr14-93235584-2	chr14	93235471	93235671	+	598.666626	f0_balb.idr|f1_c57bl6.idr	intron (NM_001271800, intron 3 of 3)	intron (NM_001271800, intron 3 of 3)	655098.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	3.27740603226073	3.23612416742799	3.16885447710656	3.7440949007981	2.70486224175701	2.72064317671526	2.69008544514649	3.04823039031148	-2.76638227329729	0.000214202351429352	0.00385407208604394
Merged-chr12-17467007-3	chr12	17466916	17467116	+	907.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77857.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	4.65115009875354	4.22672385547139	4.78748144099358	5.28908309687952	4.16492297342313	3.89231638401183	4.00232321016751	4.12718404356571	-1.78312604974266	0.000121768750014403	0.00238968234278334
Merged-chr5-52189954-5	chr5	52189856	52190056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015537)	promoter-TSS (NR_015537)	590.0	NR_104311	13204.0	Mm.993	NM_007839	ENSMUSG00000029169	Dhx15	DBP1|DEAH9|Ddx15|HRH2|mDEAH9	DEAH (Asp-Glu-Ala-His) box polypeptide 15	protein-coding	5.63044165157499	6.0883545106832	6.00137550715534	5.66492993512464	5.59219343755033	5.63727829151626	5.52038185836813	5.77907318394046	-0.364531366205656	0.182315339788078	0.47878218634963
Merged-chr7-28179987-4	chr7	28179883	28180083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271370)	promoter-TSS (NM_001271370)	-333.0	NM_001271370	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	7.94644898250844	7.80263050069425	7.66235244400769	7.75098784199738	7.99645659771954	7.96353002492492	8.1859748521702	7.56735970568735	0.202236985199816	0.286938171147814	0.598607969863316
Merged-chr16-36645885-4	chr16	36645782	36645982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	20195.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	5.15008131393238	5.34703410408992	5.1509524753297	5.01551420892067	5.39096365005801	5.29263066407469	5.44050271371907	4.81284156590481	0.181345869427737	0.570211894506146	0.809916884259967
Merged-chr3-55293571-4	chr3	55293475	55293675	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	51211.0	NM_001357466	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	5.13227825043913	4.74197065806468	4.92437500742397	5.03676953894379	4.97608902539624	5.27442095449242	5.25774095536	5.44044102948847	0.509427997732504	0.110369508983398	0.366896659813623
Merged-chr4-135960944-3	chr4	135960857	135961057	+	934.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357530, intron 9 of 9)	intron (NM_001357530, intron 9 of 9)	-2768.0	NM_001356493	74246.0	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	3.80518825718222	4.060835357817	4.09037054338376	3.75789595752702	3.61948090703307	3.87179943290269	3.7368056848869	4.08774037895589	-0.270502534992274	0.561264888004915	0.804900484135968
Merged-chr14-21985426-3	chr14	21985373	21985573	+	754.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145459, exon 3 of 3)	exon (NM_145459, exon 3 of 3)	4128.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	3.04020166068952	2.70786869397961	2.77017429081965	3.25417272202773	3.16657500593777	3.15044751740255	3.08869168225014	3.31280962742248	0.814411158664948	0.213635426268638	0.519130001583209
Merged-chr16-17703888-3	chr16	17703782	17703982	+	904.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285886, intron 2 of 16)	intron (NM_001285886, intron 2 of 16)	19018.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	4.10218922920797	4.0879695647467	3.85495710367004	4.09904624357338	3.94394937665562	3.91944703747867	4.28970838805513	3.95758429091648	-0.0261665805469341	0.951235071467879	0.982613432096075
Merged-chr19-5474709-5	chr19	5474658	5474858	+	709.780945	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164352)	promoter-TSS (NM_001164352)	23.0	NM_001164352	58859.0	Mm.276367	NM_021474	ENSMUSG00000024909	Efemp2	0610011K11Rik|Fbln4|MBP1	epidermal growth factor-containing fibulin-like extracellular matrix protein 2	protein-coding	3.89183844337848	3.52482350654595	3.51238365340399	3.55909843915294	3.60653918140326	3.31360257401259	3.25940653689223	3.61660019333848	-0.529637374739756	0.314262344127602	0.626308038585359
Merged-chr12-83730397-1	chr12	83730297	83730497	+	543.5	f0_balb.idr	intron (NM_001362271, intron 9 of 11)	intron (NM_001362271, intron 9 of 11)	-33237.0	NM_001205343	170721.0	Mm.133443	NM_130887	ENSMUSG00000021223	Papln	E030033C16Rik	papilin, proteoglycan-like sulfated glycoprotein	protein-coding	3.11020788678985	2.98675595396099	3.05824800575487	2.93379154027125	2.76393188210525	2.64164529211085	2.60902103263171	2.82232566685271	-1.46403029752072	0.0270748617447914	0.156514381883579
Merged-chr11-78856470-3	chr11	78856389	78856589	+	892.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29894.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	4.15614748581077	4.32295333438027	3.86427178679541	3.92652426219169	4.20668842441642	3.92906841265842	3.90206355350291	4.06402957716367	-0.0965926613242151	0.825736437577088	0.933160179253784
Merged-chr10-3740384-4	chr10	3740289	3740489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159942)	promoter-TSS (NM_001159942)	12.0	NM_001159942	213783.0	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	5.67830575979315	5.60718904095542	5.86085775655925	6.27875808390101	6.27194067327128	5.85802096896876	6.35397162449847	6.03656829894053	0.378784361695136	0.188888423061673	0.487687851483034
Merged-chr2-118923053-1	chr2	118922953	118923153	+	620.0	f0_balb.idr	3' UTR (NM_001045523, exon 7 of 7)	3' UTR (NM_001045523, exon 7 of 7)	-3444.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	3.46289502477887	3.74942076650308	3.33738057428765	3.67944255332024	3.74258912990814	3.80177397600742	3.56452749563194	3.68185776971434	0.380365947157337	0.440269826680831	0.727741310566664
Merged-chr5-115653117-4	chr5	115653003	115653203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151603, exon 1 of 3)	non-coding (NR_151603, exon 1 of 3)	483.0	NR_151601	75665.0	Mm.233914	NM_001080808	ENSMUSG00000041609	Bicdl1	2210403N09Rik|BICDR-1|Ccdc64	BICD family like cargo adaptor 1	protein-coding	8.65180414206036	8.9620315581801	8.83273438903947	8.52492217961432	8.70721343353633	8.85333766132961	8.75348292085254	8.57365156125647	-0.0312618850329542	0.851392452778654	0.94395961613626
Merged-chr1-152625065-5	chr1	152624890	152625090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016846, exon 1 of 18)	exon (NM_016846, exon 1 of 18)	227.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.45504233332422	5.76051238841094	5.03068893811496	5.39703258489952	5.93928484348145	6.16417219577531	5.69846621563891	5.86237255645594	0.804750220503477	0.005862863699322	0.0533725750503266
Merged-chr9-62341256-4	chr9	62341109	62341309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009672)	promoter-TSS (NM_009672)	-134.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	6.7599685519217	6.75183573310792	6.8430727367785	6.82683927253038	6.75618235469847	6.31467117157205	6.57773866741428	6.68377861870395	-0.276569459639809	0.187871509874358	0.486361382118455
Merged-chr3-146445713-4	chr3	146445618	146445818	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-4749.0	NM_028836	74245.0	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	5.18159347671637	5.02180835533471	5.18248880063298	5.22124020978815	4.49578896396228	4.78131650944833	4.90072775946089	4.84753860287348	-0.808552801610832	0.0138776430130532	0.0993859293717794
Merged-chr13-60603472-4	chr13	60603367	60603567	+	855.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	1256.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	4.37059811207027	3.6987204441078	5.32070570064225	5.01326087937928	3.65245742441374	3.96771598420222	4.26005997332998	4.22911278814155	-1.55753890169464	0.057950152022628	0.252716203334067
Merged-chr12-119313181-4	chr12	119313073	119313273	+	940.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74897.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	4.50174223972691	4.15347136486796	4.18048808630633	4.63786782284896	4.76932979150668	4.54854824978718	4.16324008076657	4.78887929480717	0.440347986825571	0.289761770220352	0.601835280197891
Merged-chr11-43755626-4	chr11	43755522	43755722	+	987.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-7649.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	5.15205264278576	5.19336789565537	4.53778210860621	4.9022061971768	5.39234139463668	4.94076359772166	4.96605031875007	5.02102995264588	0.259946445270493	0.457117068900848	0.740364738964964
Merged-chr11-85525194-4	chr11	85525085	85525285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	172021.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	7.8458060938894	7.85815904874436	7.95788880740202	7.81401848599275	7.72709687593841	7.5560809578845	7.19716959482534	7.44470336725356	-0.478815841903444	0.0100063756505858	0.0789539754387595
Merged-chr12-71864044-4	chr12	71863968	71864168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026102, intron 1 of 25)	intron (NM_026102, intron 1 of 25)	-25475.0	NM_001286452	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	5.74895524456947	6.56086054202392	5.91638927192162	5.65427697035429	6.03197355551862	6.00027409405415	5.08158422420412	5.7202344191557	-0.411384805358137	0.243796629744515	0.554820655871679
Merged-chr1-74997464-4	chr1	74997342	74997542	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029342, intron 2 of 4)	MTC|LTR|ERVL-MaLR	-45770.0	NM_010544	16147.0	Mm.439736	NM_010544	ENSMUSG00000006538	Ihh	HHG-2	Indian hedgehog	protein-coding	4.73007998073658	4.89792809661675	4.8912985066353	5.01355224160305	5.06305560673781	5.13898113240391	5.33229392068143	5.18887301568888	0.537405499325729	0.0856199756864798	0.318707445413073
Merged-chr19-46960404-3	chr19	46960317	46960517	+	818.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164363, intron 1 of 17)	ID4_|SINE|ID	1934.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	3.55808874053836	3.18435732163983	3.23772751748703	3.51790798637609	3.19446810119114	3.46757550167053	3.10070615615277	3.29539484916716	-0.440679431266071	0.427160543894906	0.718354140121047
Merged-chr13-73804653-4	chr13	73804569	73804769	+	953.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 17 of 24)	intron (NM_001360694, intron 17 of 24)	40972.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	4.80473087433993	4.84198139856262	4.54120153313277	4.77170503650481	4.5762255035449	4.58583232505104	3.95980625873035	4.76777025565637	-0.521386609123055	0.192586000506121	0.492281797386526
Merged-chr7-80715423-4	chr7	80715318	80715518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 37 of 37)	intron (NM_016721, intron 37 of 37)	-26541.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	7.31700302737914	7.43749989832494	7.37716965052183	7.23088521910961	6.83244536382563	7.37930540267272	6.93793007903852	6.87204646461994	-0.440697345979896	0.0326469103282433	0.17702644761725
Merged-chr16-36999762-4	chr16	36999637	36999837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9270.0	NM_001358217	207215.0	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	4.95818838113009	4.83731499074103	5.28008515625575	5.18640554963171	5.16563226096776	5.20399052637576	5.03959036577562	5.06071631733786	0.0699604197468737	0.823067999376385	0.932185203682946
Merged-chr15-30614589-3	chr15	30614534	30614734	+	765.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-424492.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	3.80911993706387	3.15818311981491	3.34113194707536	4.13918991111662	2.6832018172466	2.82223498352313	2.94222706075886	2.87329061002643	-4.1507981825296	3.12724815382969e-06	9.80160265704287e-05
Merged-chr10-125350526-3	chr10	125350448	125350648	+	708.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-21585.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	3.39295636474366	3.11724190252016	3.28188541513757	3.39946131370513	3.03656242621261	3.3949096296545	3.37965100930029	3.39150545327068	-0.0136430117475309	0.980225562883721	0.99281244474172
Merged-chr5-139826912-4	chr5	139826804	139827004	+	985.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356963)	promoter-TSS (NM_001356963)	-10.0	NM_025604	66506.0	Mm.29070	NM_025604	ENSMUSG00000029551	Psmg3	1810042K04Rik|4930403H09Rik|AI303239	proteasome (prosome, macropain) assembly chaperone 3	protein-coding	5.25596993608704	4.87065517801513	4.53188359553912	5.19073482567414	5.1248350870967	5.17461832032072	5.14061941842336	5.51502058381348	0.453635308639275	0.191237306621391	0.490631496828288
Merged-chr7-4431685-2	chr7	4431585	4431785	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290409, intron 3 of 5)	B3|SINE|B2	13972.0	NM_175372	108841.0	Mm.413106	NM_175372	ENSMUSG00000008435	Rdh13	8430425D21Rik	retinol dehydrogenase 13 (all-trans and 9-cis)	protein-coding	3.33163945375821	3.29771159432392	3.09921556415178	3.13689079138082	3.12432488904195	3.27242836109645	3.2088855719197	3.27590989805511	0.00969195589781808	0.985705487653252	0.994733400049209
Merged-chr2-35495651-4	chr2	35495551	35495751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E3|LTR|ERVL-MaLR	-34202.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	6.62518235517533	6.57241405334396	7.30875998848421	7.01146020876404	6.82558058610474	6.73852708084557	6.32915026626217	6.48744565351072	-0.427123569506247	0.0939290208486275	0.335277877261288
Merged-chr3-109029734-4	chr3	109029627	109029827	+	715.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2120.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	3.98771668845885	3.90921522432124	3.88942314455304	3.60936148839088	4.39667581475558	4.24977938778922	3.76743357295183	3.60220007445691	0.552270136831147	0.263472849464305	0.57547974567386
Merged-chr14-120398444-4	chr14	120398346	120398546	+	918.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 7 of 7)	intron (NM_001360380, intron 7 of 7)	-80015.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	4.40574106125664	4.59125856714004	4.60613062338082	4.32770651388748	4.5324970028467	4.24304420945424	4.46947869110432	4.40366381849571	-0.126313577311742	0.736752155948849	0.896064549728028
Merged-chr19-34464641-4	chr19	34464558	34464758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	10477.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	6.38964509894229	6.08753815221265	6.13584871447634	6.3187573851909	6.11337466570211	6.06899636940351	6.16331083117208	5.81179432116783	-0.297593934367505	0.213195019972886	0.51843149624714
Merged-chr2-70871018-4	chr2	70870920	70871120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45540.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	6.26963803719027	6.00784159859964	6.17518792013834	6.09216010443624	6.22948023001996	5.98846561117569	6.40945020174552	6.3377375707434	0.181679789051589	0.43743549395009	0.725709827551994
Merged-chr14-121416886-4	chr14	121416802	121417002	+	984.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37672.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	4.69612563443605	4.95103877849198	5.32937824649343	4.62673699046487	4.953151031986	4.95757867064017	4.94362719022165	5.29918152849405	0.251783889027249	0.478164829997312	0.754278182620364
Merged-chr11-8762398-4	chr11	8762299	8762499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97864.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.45925720569648	5.04560982552123	5.22300266579722	5.56385969268104	5.53988069738161	5.46106437296544	5.19745634530969	5.3135521054685	0.0665193396132757	0.827796645369614	0.933903677361406
Merged-chr4-86657759-2	chr4	86657681	86657881	+	652.0	f0_balb.idr|f1_balb.idr	intron (NM_007408, intron 7 of 7)	intron (NM_007408, intron 7 of 7)	12278.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	3.7884390763981	3.50238845160347	4.1304508675258	3.92802606586571	3.66273973287356	3.43678933586684	3.56269364798553	3.63069796361923	-0.848362798818143	0.0923273230291246	0.332377428984931
Merged-chr2-34781592-4	chr2	34781516	34781716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 6 of 7)	intron (NM_145522, intron 6 of 7)	9526.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	5.3145296845923	6.04604922018349	4.42615980133868	3.80706568162378	5.70541546510722	5.81177526796831	4.23495110109732	4.31071570296666	0.0201875811809553	0.985092044413581	0.994579668500912
Merged-chr6-38940353-3	chr6	38940248	38940448	+	746.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	21362.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	3.18440476184554	3.26942590774793	3.43855298283175	4.04148111817147	3.69016033395697	3.55319010449714	3.36753040334604	3.54722533457912	-0.00471808790691938	0.993727333636615	0.997702270136287
Merged-chr18-75901600-4	chr18	75901502	75901702	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	81424.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	5.18815768977668	5.52769229486153	5.53202901894892	5.5418455132	6.17586308182811	6.33721468263002	6.34898898616474	6.14026921041672	1.25141453146889	9.23654656307184e-07	3.26276996433196e-05
Merged-chr13-63256959-4	chr13	63256845	63257045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	16916.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	6.90948304415128	6.6377678862172	7.04206776533799	7.00435487408491	7.2695679484532	7.24407348481218	7.67386885092628	7.37397146223539	0.667329881127669	0.00125084446351091	0.0161059801136475
Merged-chr6-17772681-3	chr6	17772579	17772779	+	774.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	23509.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	3.78730788542915	3.50303601997353	3.51739051242515	3.86081355467168	3.6055637899863	3.80440864405096	3.72268993950169	3.83340365039684	0.154294059935292	0.748260731287912	0.900930235736524
Merged-chr17-73360467-1	chr17	73360367	73360567	+	555.0	f0_balb.idr	exon (NM_001033444, exon 5 of 23)	exon (NM_001033444, exon 5 of 23)	38829.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	3.18812556334239	3.23445675580511	3.55891338340445	3.2740936970618	2.96513151972525	3.17056635086641	3.23624874416329	3.41117197059588	-0.442897694312158	0.435785274484475	0.724840193193682
Merged-chr4-155892789-3	chr4	155892660	155892860	+	832.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033490)	promoter-TSS (NM_001033490)	885.0	NM_207223	140500.0	Mm.219591	NM_207223	ENSMUSG00000029033	Acap3	Centb5|Kiaa1716-hp|mKIAA1716	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding	3.63177491281747	3.4482703252761	3.46972779796862	3.45621024349366	3.61908069349036	3.58485462230009	3.75965693300246	3.46792601115467	0.368510406298121	0.444717649950572	0.731044175244865
Merged-chr4-155708742-4	chr4	155708634	155708834	+	964.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026899, intron 1 of 4)	B2_Mm2|SINE|B2	3919.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	4.95416510722632	4.5132028045069	4.47636522067288	4.82092034347405	4.61506445500328	4.24778257018293	4.73353969946498	4.78846980116848	-0.20774413608094	0.58398532541289	0.817485282428486
Merged-chr8-26976050-4	chr8	26975952	26976152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1284.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	6.24318069893932	6.07783854605145	5.96533055674325	5.91737482031672	6.11215261364743	5.84281185542994	6.10128740908168	5.91565213230052	-0.0655563441434886	0.788685836020126	0.91812687233996
Merged-chr4-32213662-2	chr4	32213562	32213762	+	623.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-203773.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	3.35928765042503	3.38836017939277	3.52498118595635	3.14670028768433	3.2499121743465	3.64238440936606	3.51011541774362	3.41530105982758	0.366105464231158	0.487923624334181	0.76110740386327
Merged-chr14-31830790-4	chr14	31830692	31830892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024604)	promoter-TSS (NM_001024604)	-377.0	NM_001024604	105522.0	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	6.91045934616965	6.73156134473694	6.95094294969277	7.12915903717667	7.1061326673001	7.04802288120074	7.22161965494179	6.57405377080471	0.0922718555694676	0.680514043039336	0.86892652380477
Merged-chr16-39881761-1	chr16	39881661	39881861	+	801.5	f0_balb.idr	Intergenic	Intergenic	-102603.0	NM_001361282	268890.0	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Gm29907|Lam|Lamp	limbic system-associated membrane protein	protein-coding	3.60371692082879	3.45285060242646	4.08801153079235	3.85601413773732	3.02643910444927	3.02497033643547	2.98162146457911	2.90954990639396	-3.29832531699068	3.5637530945488e-06	0.000109746123734939
Merged-chr2-150667190-5	chr2	150667101	150667301	+	628.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040331)	promoter-TSS (NR_040331)	-293.0	NR_040331	109344.0	Mm.440012	NR_040331	ENSMUSG00000087406	E130215H24Rik	-	RIKEN cDNA E130215H24 gene	ncRNA	3.1933647927567	3.0339576740292	3.40575694956036	3.35916983661353	3.22423261686185	3.11612445704701	3.12377490959799	3.00674843065674	-0.524157944386666	0.35868030967973	0.664653538577493
Merged-chr2-120101210-3	chr2	120101112	120101312	+	721.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 4 of 5)	intron (NM_133838, intron 4 of 5)	53363.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	3.09960852053058	3.06836585607652	3.03125737168902	3.3727467809116	3.57343653151552	3.27662861246852	3.57923117997529	3.44874303717059	1.09764176695894	0.0544601011569157	0.243569936553447
Merged-chr11-46077891-8	chr11	46077834	46078034	+	975.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291890, intron 3 of 22)	intron (NM_001291890, intron 3 of 22)	21950.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	3.67469146329111	3.86007077935344	4.23074514808629	3.67534499362331	3.72390720894951	3.73479918903024	3.96540441477623	3.93425103386255	-0.0830236545509983	0.86080197441781	0.947426570442475
Merged-chr13-75707992-4	chr13	75707851	75708051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138953, intron 1 of 11)	CpG	467.0	NM_138953	192657.0	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	6.59881783048694	7.12615021140681	6.76781336482678	6.2996971473083	6.84873924882693	7.04008582605833	6.85518574062262	6.51097608497976	0.143846055747495	0.573398520721256	0.811880637183087
Merged-chr17-87142392-1	chr17	87142292	87142492	+	616.0	f1_balb.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	34713.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	2.58637138195341	2.38387079577245	2.37164408118457	2.43835069314912	2.46225119083941	2.82214218485747	2.70210363370325	2.82623884045366	1.34068781269403	0.0519908619101244	0.23737380114822
Merged-chr9-53693917-4	chr9	53693812	53694012	+	955.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175562, intron 1 of 1)	ORR1B1|LTR|ERVL-MaLR	12320.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	4.87773514281543	5.26099563897983	4.84133867554063	4.97925900563886	4.98674194377525	4.67957118031759	5.05639299301578	4.79989209840557	-0.213754734654534	0.522531055034844	0.781971587334536
Merged-chr4-128981313-4	chr4	128981198	128981398	+	956.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11926.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	5.47745676240505	5.32155200306995	5.06771703370458	4.73743666522941	5.16891034822185	4.74125776919359	4.33382998594546	4.89116954549945	-0.671034978200098	0.0925125887538474	0.332721363887815
Merged-chr11-121705307-4	chr11	121705177	121705377	+	767.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	2850.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	3.56982434770413	3.48421195622844	3.67235133151234	3.49843594819103	3.58331908854667	3.73978169659334	3.26320486877664	3.51417630653302	-0.0562341524233132	0.910822180469147	0.966853759412017
Merged-chr8-10990971-3	chr8	10990867	10991067	+	745.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081212, intron 1 of 1)	intron (NM_001081212, intron 1 of 1)	-16883.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	3.58806046136945	4.00967320848284	3.69140515729318	3.6333452990281	3.21107247947418	3.40357374492961	3.57401855283572	3.41548954298629	-1.13127013721123	0.0310594476730654	0.17129865379832
Merged-chr16-92416664-3	chr16	92416549	92416749	+	915.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-16571.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	3.18225594048394	3.48036208752428	3.47674361495793	3.53487514849278	3.54792549174395	3.42008980080889	3.35458285335918	3.30671409583425	-0.0599968378178664	0.90884457926656	0.966100563913989
Merged-chr16-4559932-4	chr16	4559821	4560021	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031182)	promoter-TSS (NM_031182)	-201.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	4.79778459125995	5.3975861492961	5.02079404374872	4.9081362252433	5.21370610954463	5.09035757385036	4.3005078870057	5.31824050158127	-0.02139132085386	0.957149269875927	0.984757116793997
Merged-chr1-90603415-4	chr1	90603329	90603529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133805)	promoter-TSS (NM_133805)	4.0	NM_133805	108679.0	Mm.119177	NM_133805	ENSMUSG00000034432	Cops8	9430009J09Rik|AA408242|Csn8|Sgn8	COP9 signalosome subunit 8	protein-coding	8.18749774109211	8.13081417081251	7.96529995106758	8.22806911319952	8.24298664753061	8.41955920678741	8.28653524894208	8.21316090919131	0.196588545462956	0.215142997138445	0.521128855176098
Merged-chr16-94632110-4	chr16	94632009	94632209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	20690.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	5.9688721220416	5.99602485473486	6.0592352697772	6.28904002235353	6.293637293642	5.97543805489024	6.36475113064365	6.29007227556328	0.218844751736529	0.366056747169062	0.670655432077881
Merged-chr1-120510487-2	chr1	120510378	120510578	+	578.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-5454.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	3.20813824086461	3.27943547375288	3.33783730109611	3.16073829225621	3.75114912348047	3.3894985243812	3.69409982939788	3.83985059824706	1.48549337544112	0.00328637408957296	0.0342741130141705
Merged-chr4-21776276-4	chr4	21776164	21776364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290425)	promoter-TSS (NM_001290425)	-6.0	NM_001290425	77593.0	Mm.154306	NM_152825	ENSMUSG00000040455	Usp45	3110003C05Rik|4930550B20Rik|AI843191|Gcap7	ubiquitin specific petidase 45	protein-coding	7.30183980780419	7.09718649359275	7.10288761393837	7.24317923982509	7.3042907592424	7.35012845251356	7.15980861780599	7.27729223928312	0.112757168344564	0.533427007052506	0.788699880247405
Merged-chr11-51619623-4	chr11	51619538	51619738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026631)	promoter-TSS (NM_026631)	-135.0	NM_026631	52530.0	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	8.2450525209699	8.53514466254482	7.76160447278129	7.76075839642536	8.5669424763699	8.8664406753456	8.24192304362992	8.28107034320173	0.503475559709328	0.0320602675661546	0.174942080741216
Merged-chr6-145212184-4	chr6	145212090	145212290	+	928.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163628, intron 1 of 2)	intron (NM_001163628, intron 1 of 2)	1043.0	NM_001362057	67636.0	Mm.486359	NM_133688	ENSMUSG00000040370	Etfrf1	4930469P12Rik|AL022899|Ghiso|Lyrm5	electron transfer flavoprotein regulatory factor 1	protein-coding	4.27482833433318	4.31447403476241	4.92920171920185	4.52452192037558	4.76108742891354	4.54849882637437	4.2573408322894	4.73166665463	0.132865361242728	0.740565838432741	0.89796578098129
Merged-chr10-122553269-3	chr10	122553169	122553369	+	727.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16622.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	3.82629270240227	3.63388447702818	4.05982366096016	3.61319857832442	3.769951881229	3.8952570724458	4.04111510404263	3.8246156527065	0.290496281765339	0.528630413808139	0.785163370916878
Merged-chr18-66437534-4	chr18	66437434	66437634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21070.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	5.8978709174085	5.94105327883412	5.75427098344957	5.9500517841746	6.06385813657688	5.95509715439784	5.89139886430878	5.82443855984831	0.0771480300659106	0.750813003936776	0.901855648088396
Merged-chr3-60580945-4	chr3	60580851	60581051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	79772.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	5.7391615876854	5.76415147990464	5.52102323257266	6.09007146846739	5.89468932717999	5.81169427077122	5.87497168636994	5.80937090690064	0.0504742816284018	0.851188445881624	0.943894442930937
Merged-chr18-5688638-4	chr18	5688471	5688671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360981, intron 2 of 8)	MTD|LTR|ERVL-MaLR	95924.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	6.67734733934534	6.89601774911765	7.03246957891522	7.06191279339094	6.52300945596339	6.38644247173465	6.37653810501877	6.68881322099225	-0.616747564427293	0.00416243872022908	0.0413623098795456
Merged-chr6-37442355-4	chr6	37442243	37442443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178661)	promoter-TSS (NM_178661)	-195.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	9.10997833415009	9.237249631215	9.33925557157144	9.19058810529705	9.28954233966486	9.42229841628676	9.20978794968296	9.04076408330762	0.0329442515705159	0.82734969735482	0.933797258511357
Merged-chr16-27296740-3	chr16	27296645	27296845	+	919.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10896.0	NM_198112	239790.0	Mm.390880	NM_198112	ENSMUSG00000052276	Ostn	Ostc	osteocrin	protein-coding	3.71876140937638	3.81935175229543	4.02276460025131	4.00243590481885	3.97031754327954	3.77876807012325	3.91275872141942	4.06448272862394	0.0939138917797391	0.831315871470699	0.935322338382222
Merged-chr3-40739175-3	chr3	40739085	40739285	+	867.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6428.0	NM_011020	18415.0	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	3.43176584794903	3.26841466260219	3.66368836653381	3.93442144506018	3.79661874316283	3.54740678361831	3.97068594419313	3.76340280684795	0.4892355199288	0.363362043208671	0.668503886726201
Merged-chr9-78538148-4	chr9	78538094	78538294	+	994.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001276452, exon 11 of 11)	exon (NM_001276452, exon 11 of 11)	49851.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	5.79934268993203	4.92830907284133	5.56014756104068	5.6906138867289	5.73967797451954	5.33878805134802	5.53206421277564	5.5021836943657	0.00832176365436565	0.979367711435441	0.99269129061727
Merged-chr2-104001296-4	chr2	104001237	104001437	+	730.012512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175161, intron 3 of 4)	intron (NM_175161, intron 3 of 4)	-26462.0	NM_020593	57443.0	Mm.143768	NM_020593	ENSMUSG00000027180	Fbxo3	1200002G09Rik|1700026K02Rik|AI046358|Fba	F-box protein 3	protein-coding	3.57718665069765	3.29093337978129	3.77106626158465	3.27778735272877	3.10595168075013	3.40249320556435	3.75348962829294	3.62665499968351	0.0107110477707035	0.984867576274256	0.994470259676655
Merged-chr2-181680220-4	chr2	181680107	181680307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356342)	promoter-TSS (NM_001356342)	-90.0	NM_001356343	21400.0	Mm.24245	NM_009326	ENSMUSG00000059540	Tcea2	AI326274|S-II-T1|SII-T1|Tceat	transcription elongation factor A (SII), 2	protein-coding	6.14435125156979	6.02200217941541	6.18298067833913	6.10220175824501	5.6541634752292	5.97288601181968	5.54958486227541	6.00009716808329	-0.497049390902736	0.0494308043332529	0.230075166822881
Merged-chr3-52198653-4	chr3	52198557	52198757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69680.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	6.04762929574754	5.91371125158525	6.26299232219419	6.22659355791318	5.96260151672483	6.15909156488014	6.11918330027411	5.86208621183468	-0.153790567739167	0.526892498353081	0.784003266334357
Merged-chr9-75094906-4	chr9	75094822	75095022	+	992.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010864, intron 1 of 40)	intron (NM_010864, intron 1 of 40)	23716.0	NM_010864	17918.0	Mm.3645	NM_010864	ENSMUSG00000034593	Myo5a	9630007J19Rik|AI413174|AI661011|Dbv|MVa|Myo5|MyoVA|Sev-1|d|d-120J|flail|flr	myosin VA	protein-coding	6.15165561298902	6.02147304098912	6.27477136927779	6.08459371486961	5.51291721124841	5.24861003798739	5.52621688416667	5.7905513097483	-0.973000588688824	0.000240977640234492	0.00423624288818249
Merged-chr10-125386844-3	chr10	125386738	125386938	+	771.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57875.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	3.44210197219208	3.1694978711738	3.28665868945015	3.63226534478396	3.16596731735984	3.01090273572012	2.96733506699954	3.16937753359275	-1.23128740339461	0.0374847910033246	0.19335177820005
Merged-chr7-81862553-4	chr7	81862450	81862650	+	987.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291282)	promoter-TSS (NM_001291282)	-137.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	5.50357028092624	5.64724744773154	5.220220934909	5.35227172446593	5.16917162926407	5.07581906941622	5.16254396885181	5.08244441125239	-0.570673150404778	0.0550140222357272	0.245107854827042
Merged-chr18-23843537-4	chr18	23843444	23843644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 3 of 7)	intron (NM_001162941, intron 3 of 7)	39574.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	6.14910191079377	6.15129100318857	5.9978914587966	6.37517009820639	6.00420054864283	6.30582728022974	6.60281620237535	6.2630693659121	0.173865185413672	0.490312900694757	0.762174753407996
Merged-chr7-5047493-4	chr7	5047405	5047605	+	720.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-4027.0	NM_026900	68992.0	Mm.41484	NM_026900	ENSMUSG00000055633	Zfp580	1500015O20Rik|AI838225|Znf580	zinc finger protein 580	protein-coding	3.34515016678182	3.50821857196536	3.4730142471911	3.50125665558508	4.03667874868983	3.91573719240266	3.73060883096936	3.64193505561021	1.1720055505898	0.0147374337103199	0.103532443081496
Merged-chr4-145233419-2	chr4	145233319	145233519	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	13451.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	4.25210241069015	4.28372980836001	4.550262062054	4.56609418825021	4.37434175717518	4.5171495547282	4.41105539295688	4.38594175504886	-0.0272765877056669	0.942313187009801	0.979080815376327
Merged-chr13-54687279-4	chr13	54687173	54687373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027396, intron 1 of 10)	CpG	535.0	NM_001146025	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	5.8228223635822	5.69191301048235	5.48387213427106	5.71368656129276	5.60009044705552	5.82729593539633	5.81677903612132	5.84240833424146	0.133631686271435	0.605982270931534	0.829261584624056
Merged-chr9-120098904-4	chr9	120098826	120099026	+	831.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6793.0	NM_007720	12776.0	Mm.442098	NM_007720	ENSMUSG00000042262	Ccr8	C-C|C-C CKR-8|CC-CKR-8|CCR-8|CKR-8|Cmkbr8|mCCR8	chemokine (C-C motif) receptor 8	protein-coding	3.92074909372404	4.18621202330708	3.63991104059668	4.00813619707321	3.82792746815997	4.18899320301928	4.00146412860751	4.01645293779023	0.131983988028366	0.769415416676958	0.909742530773464
Merged-chr13-97295528-4	chr13	97295402	97295602	+	952.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54397.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	5.62103550832594	5.73309343638613	5.26949071477276	4.90578592942984	5.55008963186426	5.38175369738371	4.88853136280664	5.16851356448113	-0.242426234814977	0.498530613128107	0.767689473029564
Merged-chr10-120980345-4	chr10	120980275	120980475	+	925.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1045.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	4.68936814306783	4.94279353632232	4.53581081360826	4.11249733054831	4.40677840787692	4.78752299803961	4.51466563425306	4.20919173167457	-0.231221706364688	0.586177533193688	0.818557203798918
Merged-chr19-46522643-4	chr19	46522564	46522764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	21016.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	7.6068708236946	7.52757992221859	7.58243526929322	7.52522828872022	7.38360391171666	7.33033418208764	7.61242686409643	7.44968400514779	-0.147384047318242	0.393507408039671	0.692600672507004
Merged-chr9-75273744-4	chr9	75273639	75273839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081322, intron 19 of 40)	intron (NM_001081322, intron 19 of 40)	-32549.0	NM_010313	14697.0	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	5.58869589795992	5.27526955660904	5.84385799679382	6.38588207540682	5.93083730305181	5.34506256255651	5.88080338813545	5.92851180202556	-0.100716276885224	0.771021174869225	0.910353175958998
Merged-chr1-180417336-4	chr1	180417235	180417435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 4 of 7)	intron (NM_001081175, intron 4 of 7)	66169.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	7.19429232964244	7.02088211884255	6.96690851970951	7.34162201000242	7.10347650183842	7.19532367988876	7.26462919725378	7.09917103720954	0.0182588094517937	0.925376664110481	0.97247070180594
Merged-chr5-121596772-4	chr5	121596680	121596880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-2956.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	5.50652453776569	5.31911629600593	5.22314757477086	5.11884680960336	5.18744277757036	5.15669289471264	5.19747033574276	5.55340466298106	-0.0104402483997719	0.972541526903111	0.990115073860739
Merged-chr17-57275657-4	chr17	57275560	57275760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3440.0	NM_001163816	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	6.25844056895171	6.13874184462741	6.33030601785946	5.61214149072091	6.245592669283	6.23885160628074	5.87440067664753	6.16066055186319	0.0704970326129702	0.79898054074098	0.922381586635156
Merged-chr1-20829894-2	chr1	20829794	20829994	+	786.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9582.0	NM_008563	17215.0	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	3.03507489512765	2.7660478821504	3.20037088894584	2.99447577025534	2.80867308259776	3.02108785413626	2.96478274004265	3.03386388437512	-0.209327125479901	0.730019075477521	0.892877519245152
Merged-chr17-15826064-3	chr17	15825993	15826193	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178615, exon 1 of 3)	exon (NM_178615, exon 1 of 3)	493.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	5.47990946229562	5.14144209393837	6.20277733501253	5.70095525582939	5.5721920896843	5.53611028671518	5.83083087907476	5.7423726854565	-0.0207479412430053	0.948930152773	0.981672861338433
Merged-chr11-95507391-3	chr11	95507318	95507518	+	887.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7147.0	NM_130858	104079.0	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	3.16587012272454	3.1859002957715	2.94292917682087	3.19822138354572	3.82718219931611	3.93262469605604	3.51200937882263	3.47136425387736	1.9243632453474	0.000631781878878914	0.00929508109895044
Merged-chr11-60776837-4	chr11	60776731	60776931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175491)	promoter-TSS (NM_175491)	534.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	6.3577802064899	6.59693803973395	5.99883282816895	6.02203242531088	6.38290195968762	6.42549647403007	6.21787367223286	5.87343735393345	-0.0258144203070242	0.923377710316224	0.971661765008416
Merged-chr5-3502787-4	chr5	3502664	3502864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-41069.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	8.38254671010836	8.58380425379629	8.62779143989892	8.58617440259479	8.44888392474004	8.49519914114965	8.54782585639094	8.35121928440879	-0.111143855432968	0.463305040519559	0.744647770407916
Merged-chr8-71308149-4	chr8	71308020	71308220	+	813.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	35406.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	4.25777509868711	4.54513022974404	3.80753053944963	4.29222065475362	3.92208351460695	4.15152056608546	3.9064100489047	4.21278089163788	-0.52701684181371	0.238326322822566	0.54879281042504
Merged-chr13-119597798-4	chr13	119597709	119597909	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-26010.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	4.97726698425272	4.92546475504326	5.31561973347663	5.44290735798034	5.56948254183313	5.36616862700093	5.16561895892616	5.50391067565859	0.385318227978192	0.22655997033003	0.53520075526854
Merged-chr8-15519942-4	chr8	15519848	15520048	+	968.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	462295.0	NM_008664	17930.0	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	4.753928920231	4.82839675154938	4.95308807450055	3.84779234071383	4.30624856313972	4.96248526145127	4.16170955273361	4.75146135772164	-0.168784625918943	0.724701540750795	0.890415158618739
Merged-chr5-110839869-4	chr5	110839757	110839957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016681)	promoter-TSS (NM_016681)	-80.0	NR_153348	100900.0	Mm.200231	NM_153571	ENSMUSG00000043510	Hscb	AI325508|AW049829|Hsc20	HscB iron-sulfur cluster co-chaperone	protein-coding	8.326216995264	8.65306461559997	8.24078364680898	8.21047090385612	8.67670813780511	8.56004676420469	8.60680559607356	8.28814209671045	0.220894908436443	0.217405660076876	0.524300100918583
Merged-chr3-103112390-3	chr3	103112281	103112481	+	621.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15175.0	NM_177857	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	2.62059284299699	2.81273290618202	2.62092570257802	2.67079504000489	2.31684614470652	2.37223768030326	2.41613523021631	2.49107401418198	-1.6975560353587	0.0226066116107573	0.138860546068527
Merged-chr7-25132526-4	chr7	25132420	25132620	+	981.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163555)	promoter-TSS (NM_001163555)	-60.0	NM_001163554	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	5.09972393726848	5.43575867920938	5.10056139318587	5.10166604636436	5.43514747270124	5.46908099251103	5.62980567574949	5.16521233243425	0.445364816663471	0.136498014766914	0.411041680124133
Merged-chr10-115806127-4	chr10	115806015	115806215	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-11169.0	NM_001168680	216350.0	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding	5.37806106873735	5.00511129620378	4.84299377279002	5.40223528011204	4.70258484190976	4.31486914676984	4.6635979213218	4.63975119706389	-1.2052270880111	0.000957394510658924	0.0129951151552615
Merged-chr5-138997690-4	chr5	138997574	138997774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2721.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	5.74365634095729	5.12349800553602	5.15054239203765	5.30288321854241	5.69045169167264	5.14605057478519	5.31561150320987	5.24634968643435	0.0542377374095687	0.867656966014378	0.950400960018735
Merged-chr1-120100715-3	chr1	120100619	120100819	+	659.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20200.0	NM_001037999	13167.0	Mm.2785	NM_007830	ENSMUSG00000026385	Dbi	ACBD1|Acbp|EP|endozepine	diazepam binding inhibitor	protein-coding	3.21706075699708	3.45380108202004	3.27935765226355	3.66067529359049	3.16397298602578	3.56390538031204	3.26781605248742	3.3932197835222	-0.269705471536953	0.626932098417986	0.840890929247264
Merged-chr1-120044879-3	chr1	120044778	120044978	+	820.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 7 of 13)	intron (NM_001012322, intron 7 of 13)	28902.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	3.9021530452297	3.51539229624901	4.07878033118024	4.1798950579689	3.53966404830124	3.70060258588121	3.68392462928935	3.80238811660438	-0.796324606992253	0.107675466617312	0.361861758184782
Merged-chr17-35382859-2	chr17	35382760	35382960	+	791.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001143689, exon 4 of 6)	exon (NM_001143689, exon 4 of 6)	3243.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	3.05314544996851	3.40591691800325	2.87552915856283	2.47452423146864	2.89135515683462	2.85207802552623	2.66233703462997	2.59319065323172	-1.06182510699119	0.152948784874173	0.437429345811585
Merged-chr16-33769653-2	chr16	33769553	33769753	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-24384.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	3.18425875955338	3.44086746766077	3.35378605713201	3.25811806875293	3.35495351729993	3.09797328257188	3.11272100148483	3.18308762906255	-0.421051359410767	0.446000235630134	0.731774752267646
Merged-chr4-41348029-4	chr4	41347931	41348131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290454)	promoter-TSS (NM_001290454)	-965.0	NM_001355509	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	5.76519805375956	5.47246028869681	5.41089381719274	5.79522138514126	5.76808064575322	5.52549226449153	5.87145716420353	5.98009911396688	0.270358290157599	0.327263901281912	0.638813032478959
Merged-chr17-48322545-4	chr17	48322444	48322644	+	960.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177083, intron 5 of 5)	intron (NM_177083, intron 5 of 5)	6382.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	4.95561815082683	4.75988366752059	4.59620452415162	4.87366548739922	4.54193114414035	4.77044870953964	4.49003524474849	4.63420563659301	-0.426745186938425	0.219700500548025	0.527345281266327
Merged-chr6-124741500-1	chr6	124741400	124741600	+	1000.0	f0_c57.idr	promoter-TSS (NM_013535)	promoter-TSS (NM_013535)	-421.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	6.23177465872481	6.32708751990591	5.85910054126511	5.66249675468863	5.96634870849653	6.05926991370398	5.89936622541819	5.90233542524326	-0.122560417670291	0.654281006978477	0.855598239894931
Merged-chr17-62642699-4	chr17	62642604	62642804	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010109, intron 2 of 3)	intron (NM_010109, intron 2 of 3)	238613.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	4.9339919738706	5.05887736180706	5.44326934883612	5.88165757394884	4.74020091099228	4.95182683961388	5.21904663169708	5.35838443822033	-0.58112702247277	0.124768931938226	0.392136995346126
Merged-chr10-96691146-4	chr10	96691069	96691269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74168.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	7.42028280560737	7.60172085931579	7.36179333667375	6.52535672250697	7.86947320003751	8.00961099060834	7.35519915194761	7.14623437831332	0.482032394714853	0.0914650235061539	0.330476594322057
Merged-chr8-109704713-4	chr8	109704586	109704786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286393)	promoter-TSS (NM_001286393)	-860.0	NM_001286393	75871.0	Mm.180410	NM_029468	ENSMUSG00000031728	Zfp821	4930566A11Rik|Znf821	zinc finger protein 821	protein-coding	6.18222485419161	5.53423486434547	6.39378314062347	6.64100541350156	5.68530204937563	5.8528999683977	6.15149425493719	5.97189412007995	-0.523001390886256	0.0929525169550323	0.33357198730702
Merged-chr7-28972863-4	chr7	28972745	28972945	+	676.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028659, intron 6 of 7)	intron (NM_028659, intron 6 of 7)	9043.0	NM_001285943	73830.0	Mm.29714	NM_028659	ENSMUSG00000053565	Eif3k	1200009C21Rik|Eif3s12	eukaryotic translation initiation factor 3, subunit K	protein-coding	3.39437225560509	3.88015180117722	3.63671753129016	3.61546346838633	3.89169177250278	3.96159057186028	3.56681610676713	3.74070102332682	0.465895060202151	0.336784879435119	0.646671794355953
Merged-chr9-78528086-4	chr9	78527979	78528179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-46355.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	5.44794707948711	5.7868720478914	5.61764192791272	5.7060447094362	5.59520325340983	5.93959434160299	5.64057525187683	5.41470610421008	0.0057008212838824	0.98348084210018	0.994024520899817
Merged-chr8-70698897-4	chr8	70698827	70699027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010592, exon 1 of 1)	5' UTR (NM_010592, exon 1 of 1)	1188.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	8.93519914690835	8.96106739422562	8.81488973501416	8.69361672252289	8.75709601960157	8.89731817037703	8.84869567425734	8.64751065476649	-0.0769880851998643	0.614331515912428	0.833803723831637
Merged-chr1-59619617-4	chr1	59619524	59619724	+	806.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013771, intron 13 of 19)	ORR1F|LTR|ERVL-MaLR	51210.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	3.72182008561865	3.28683113661361	3.51615363004711	3.30667577178503	3.63719159089437	3.451556055657	3.8395545838767	3.56887053648194	0.565226499228772	0.267074683945628	0.578729570402028
Merged-chr4-130795673-2	chr4	130795573	130795773	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	3136.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	3.69539377112637	4.04843888568274	3.91726372158786	3.99640923297561	3.93119091904519	3.62047047957888	4.08791576088874	4.44703076751005	0.346911631012674	0.467926029997555	0.747218263768025
Merged-chr7-84669936-2	chr7	84669836	84670036	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360577, intron 1 of 7)	intron (NM_001360577, intron 1 of 7)	9460.0	NM_022985	65098.0	Mm.209349	NM_022985	ENSMUSG00000030629	Zfand6	3110005P07Rik|Awp1|Za20d3	zinc finger, AN1-type domain 6	protein-coding	3.47736841091601	3.24724886280247	3.31202941919347	3.08437919846148	3.33457909842079	3.48527313285378	3.11243123090328	3.66754343875766	0.477517747240543	0.386910783122462	0.68794281367211
Merged-chr6-88902883-2	chr6	88902783	88902983	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011906, intron 1 of 11)	intron (NM_011906, intron 1 of 11)	632.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	4.11372346870935	3.86186134631498	4.15904683288661	3.79170039987216	4.23000140840845	4.23970913070367	3.79340320631941	4.19952455397482	0.404068711317421	0.356488551860559	0.662883007207157
Merged-chr5-42977299-4	chr5	42977201	42977401	+	937.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-256162.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	4.17817253096491	4.64971624183691	4.73895886591913	4.60930910292481	4.56812417557215	4.35944453637733	4.64506550054207	4.66409568208252	0.00217336778893756	0.995387528203236	0.998318694595211
Merged-chr13-63702102-4	chr13	63702047	63702247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126476, intron 4 of 4)	intron (NR_126476, intron 4 of 4)	32151.0	NR_126476	75522.0	Mm.54259	NR_126476	ENSMUSG00000113825	1700024I08Rik	-	RIKEN cDNA 1700024I08 gene	ncRNA	6.49857747286203	7.15281836766162	6.70260841836136	6.84557651810627	7.28610869006715	7.02684802845244	6.97111193880885	6.98925356822137	0.3503798072614	0.11650934244131	0.377635281883107
Merged-chr1-143917784-4	chr1	143917682	143917882	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86367.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	5.39964604225685	5.4521320583421	5.45589086489166	5.76632152457333	5.22703277060803	5.22240656730712	5.05646539828682	5.14797911217259	-0.678649889969715	0.021262188664215	0.133317593986096
Merged-chr17-34261660-4	chr17	34261510	34261710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1617.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	7.81705922807075	8.04037103282933	7.5488303602005	7.33715259398577	7.91840231082999	7.89335029271644	7.69443685333091	8.16109919416271	0.286421209016776	0.180626564249919	0.477043671146927
Merged-chr2-27318441-4	chr2	27318384	27318584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 3 of 29)	intron (NR_133905, intron 3 of 29)	-71181.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	5.34521029896251	5.34198049534617	5.04948372260802	4.80611134855027	5.23712584026989	4.96705702297702	4.88471413210849	4.86673271175138	-0.259296923189606	0.450277573415729	0.735233969144434
Merged-chr5-142441776-3	chr5	142441679	142441879	+	806.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	Tigger7|DNA|TcMar-Tigger	-22152.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	3.02615937547376	3.40036493669767	3.08612807114624	3.06315294896574	2.9991652478456	2.93628759159683	2.75027062608866	3.08450877677333	-0.84567964709011	0.170562113530819	0.463747304290085
Merged-chr12-16895510-4	chr12	16895362	16895562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	CpG	484.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	5.30223876978611	5.83944595028007	5.27098389573685	5.34935001793347	5.36185395250711	5.56993014276854	5.58334048257295	5.36141384306014	0.0110407991318205	0.970556060778424	0.989436241028349
Merged-chr3-50906090-3	chr3	50905953	50906153	+	909.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-318394.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	3.75297682796411	3.88203797164867	4.46447959211782	4.16239790704753	3.36199083554751	3.69402564767238	3.89471060937182	3.85869543171906	-1.08810445626186	0.0337877995083134	0.181261816490974
Merged-chr14-74848332-4	chr14	74848234	74848434	+	972.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 2 of 19)	intron (NM_001033439, intron 2 of 19)	99543.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	5.30266942254294	5.99566039344905	5.27154727519563	4.39843925244288	5.69667719933675	5.92597930547852	5.5577249033367	4.97903577598221	0.34673112448193	0.574893961656592	0.812637259775993
Merged-chr13-97187886-4	chr13	97187804	97188004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010422, intron 5 of 13)	intron (NM_010422, intron 5 of 13)	10453.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	8.38468661039483	8.46055794549394	8.84671287155404	8.54857379926696	8.17759801000544	8.35636489814504	8.34696449357356	8.18569577001912	-0.384803598139971	0.0238412795521135	0.143740338576985
Merged-chr4-41556770-3	chr4	41556667	41556867	+	640.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027993, intron 1 of 5)	intron (NM_027993, intron 1 of 5)	12760.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	2.36241199045157	2.31622988392878	2.59593555734551	2.27789011005868	3.02745898413092	2.77715951200912	2.84412475750185	3.16732099408574	3.13561653577088	1.80641253029507e-05	0.000466540774651207
Merged-chr10-13983910-4	chr10	13983812	13984012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	17533.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	7.54888575083076	7.53609842535881	8.48249870769743	8.07785584151292	7.23149484067078	7.24629028974346	7.4759933689595	7.36913820487022	-0.843967376209266	0.00053862564220811	0.00819906642145659
Merged-chr9-56161030-4	chr9	56160905	56161105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019793)	promoter-TSS (NM_019793)	65.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	6.24357416239599	6.14477146197678	6.46681931022356	6.48942366247122	5.89618097404861	5.98026773074779	6.17491148396821	5.94696736365843	-0.541878777827177	0.023431174387288	0.142074074598583
Merged-chr15-89339882-4	chr15	89339788	89339988	+	798.770813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5415.0	NM_019977	56727.0	Mm.158200	NM_019977	ENSMUSG00000022613	Miox	0610009I10Rik|AI314022|Aldrl6|C85427|RSOR	myo-inositol oxygenase	protein-coding	4.05427568286551	4.01295213048122	3.95820298877923	3.99822447803184	4.13179980210447	4.07991776816858	3.99056602162863	4.00507713694732	0.136619925568646	0.73895228402841	0.897069647209902
Merged-chr17-81065057-4	chr17	81064956	81065156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028138)	promoter-TSS (NM_028138)	29.0	NM_028138	72167.0	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	7.59641822546126	7.74112765669754	7.78361888024278	7.32127008293574	7.45378953917106	7.57742274913831	7.92667310211665	7.37411088663642	-0.0208576038435978	0.920343968561656	0.97043423951189
Merged-chr10-34208358-4	chr10	34208261	34208461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172508)	promoter-TSS (NM_172508)	-810.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	5.98420424804567	6.17939900287122	6.21832089971179	5.85302978679899	5.95768467755371	5.87619546121204	5.4999210548536	5.66788683978722	-0.458844226228353	0.0856020515379351	0.318707445413073
Merged-chr2-156201658-4	chr2	156201569	156201769	+	954.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 1 of 17)	B3|SINE|B2	5022.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	4.83534252102442	4.75636565658637	4.37457663362473	4.50761843079658	4.6221516378674	4.45649363720483	4.30883918150895	4.50373803493705	-0.315087955900935	0.401644617288388	0.699189596811911
Merged-chr1-161479999-3	chr1	161479911	161480111	+	922.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14646.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	4.02285292252079	4.09089627128344	4.11381858262176	4.3222578789394	3.74536090896566	3.88491101334791	3.69330250416021	3.9733896724238	-0.915775368749772	0.0381770543590254	0.195778425952527
Merged-chr8-70505074-4	chr8	70504968	70505168	+	825.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_018827)	TTS (NM_018827)	1358.0	NR_151646	66462.0	Mm.28242	NM_025577	ENSMUSG00000058833	Rex1bd	2810428I15Rik	required for excision 1-B domain containing	protein-coding	3.94208784563188	3.78795016743989	3.65481818641663	3.67148935310592	4.4844119581581	4.21660977766496	3.76261724798091	4.54709733578543	1.38964575969726	0.00247732307036636	0.0275822585367757
Merged-chr7-30420422-4	chr7	30420316	30420516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011827)	promoter-TSS (NM_011827)	-562.0	NM_011827	23900.0	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	7.47423984187331	7.61550555796707	7.66910114294882	7.19252960131405	7.60686527742964	7.55398013484113	7.64772689679183	7.60547867578241	0.153458675180046	0.415940742474588	0.710034947207746
Merged-chr16-28914384-3	chr16	28914301	28914501	+	902.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177718, intron 1 of 1)	intron (NM_177718, intron 1 of 1)	15297.0	NM_177718	239796.0	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	3.34366428499967	3.22859463510521	3.10774468118308	2.68052172405422	4.45911512807555	4.6176057546991	4.00880360391465	4.02626557628888	4.25441999792876	9.65649635955164e-13	1.02895172810857e-10
Merged-chr2-121484665-2	chr2	121484557	121484757	+	980.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10634.0	NM_001081975	100034361.0	Mm.270393	NM_001081975	ENSMUSG00000048222	Mfap1b	-	microfibrillar-associated protein 1B	protein-coding	3.2742542166126	3.33726237538094	3.27469636654405	3.21309726252731	3.05266240618708	2.92039240330936	3.31558106841869	3.32722185143576	-0.417632356788087	0.461248483884206	0.743056442024124
Merged-chr18-62971391-4	chr18	62971271	62971471	+	843.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6545.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	4.63871930835216	3.95985785475704	3.72771928895104	4.14170067283027	4.42308617632498	4.39060435799307	4.28594796453032	4.12086171206152	0.374323079481273	0.412445950691056	0.707579906585652
Merged-chr9-106296935-4	chr9	106296828	106297028	+	903.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 7 of 10)	intron (NM_027354, intron 7 of 10)	15867.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	4.87268648422289	4.68425238158854	4.63618450115026	3.52599821606768	5.96516057195249	6.22407354900058	6.4975079923271	5.8709119537949	2.99060651350715	2.42221979000499e-13	2.92288624347427e-11
Merged-chr1-128729725-4	chr1	128729598	128729798	+	939.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-137399.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	4.31814869903476	4.18522107409802	4.17052373656053	4.79076804634647	4.41393435773545	4.24442298503721	4.96673482878846	4.53072093344895	0.346961677948722	0.429784649217913	0.720626426084
Merged-chr6-32570103-3	chr6	32570009	32570209	+	764.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	18083.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	3.38954025600274	3.88541665112337	3.6113149219799	3.72927898994167	3.57320142125693	3.50382347913763	3.18637988740718	3.32666697592811	-0.855542495083234	0.112631173972321	0.371111186251176
Merged-chr1-165770428-4	chr1	165770326	165770526	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 3 of 4)	intron (NR_149310, intron 3 of 4)	6668.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	4.62010783289059	4.4985257343967	4.77805167227662	5.060484721952	4.9448777974803	4.24842592619915	4.67982510232567	5.15437103042731	0.0723233849619508	0.858922788538382	0.946576014812915
Merged-chr7-19282586-4	chr7	19282507	19282707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013648)	promoter-TSS (NM_013648)	-17.0	NM_013648	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	6.5617765924033	6.61856614632597	6.03377284048697	5.98189791106044	6.57194272004708	6.53881077520754	6.58929639935116	6.28350942278037	0.269011249462224	0.297829987750723	0.609997430383239
Merged-chr5-139324280-3	chr5	139324184	139324384	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 1 of 10)	intron (NM_172723, intron 1 of 10)	1180.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	2.99975923240847	3.38479562001166	3.12665962171827	3.06904549891703	3.09242247443905	3.23680181371358	3.2299247177472	3.24078890497919	0.179440568454229	0.748089993238391	0.900815396053715
Merged-chr3-81262992-3	chr3	81262881	81263081	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	226565.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	4.23620694614477	3.77745862485933	4.05916042738232	3.50007816206736	5.19946159056388	5.78367784512229	5.11523364038126	5.19457216223142	3.25008517204829	2.43892453923791e-15	4.18313758502205e-13
Merged-chr15-58076662-4	chr15	58076569	58076769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042438)	promoter-TSS (NM_001042438)	-161.0	NM_009572	22770.0	Mm.244931	NM_009572	ENSMUSG00000022361	Zhx1	-	zinc fingers and homeoboxes 1	protein-coding	8.86544599215598	9.03637281094059	8.8152248505459	8.65361359985763	9.050964279578	9.16714372795366	8.98362746991397	8.79336957582755	0.198026867622301	0.224983010209079	0.533383973104412
Merged-chr18-52465643-4	chr18	52465561	52465761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026040)	promoter-TSS (NM_026040)	-32.0	NM_026040	67222.0	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding	8.43336711363436	8.80221070015493	8.56880342581815	8.49299649550723	8.77483774219056	8.76542241697801	8.60685537543537	8.29086321473156	0.055459540578026	0.755899076129612	0.904046752286092
Merged-chr3-31097070-6	chr3	31096974	31097174	+	936.5277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011386, exon 2 of 7)	5' UTR (NM_011386, exon 2 of 7)	2016.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	3.60909297707869	3.31907446828067	3.6095867378148	3.58068595868054	3.72398658936705	3.61007576960545	3.64970397519936	4.28743211281148	0.931844994922671	0.0670410826708311	0.276152617096475
Merged-chr12-4817466-4	chr12	4817348	4817548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025323)	promoter-TSS (NM_025323)	-160.0	NM_025323	66055.0	Mm.102627	NM_025323	ENSMUSG00000037361	Sf3b6	0610009D07Rik|6030419K15Rik|AV001342|Sf3b14	splicing factor 3B, subunit 6	protein-coding	7.60010074622956	7.51167439896537	7.26742238701654	7.48165218530632	7.50561219943406	7.33016324077441	7.34567754117703	7.25143160780605	-0.140163366372916	0.441755365434025	0.72862252708211
Merged-chr12-52687567-3	chr12	52687489	52687689	+	839.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11794.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	4.33857552254699	4.50558939796733	4.4946747552715	4.75946094813666	3.72995207544604	4.02541261005088	3.94136805007593	3.77823762376025	-1.79646649736888	3.73391013880768e-05	0.000875992055933395
Merged-chr14-76414544-4	chr14	76414399	76414599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310646)	promoter-TSS (NM_001310646)	-462.0	NM_001310646	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	7.35361977663231	7.35576514427437	7.56365795992142	7.05934705116299	7.08753993238643	7.19425718696678	7.12716597847528	7.13485126053002	-0.269415613738594	0.172972930526405	0.466807212206216
Merged-chr6-145750754-3	chr6	145750676	145750876	+	823.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57607.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	3.81338840341328	3.52130011399058	3.99922052971978	4.45586588284912	3.31412183759613	3.30678824569616	3.79746831729234	3.7081187533207	-1.35778227738822	0.0178557406697919	0.118559119882007
Merged-chr15-79752009-4	chr15	79751882	79752082	+	949.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045069, intron 3 of 3)	intron (NR_045069, intron 3 of 3)	9284.0	NR_045069	100504191.0	Mm.421420	NR_045069	ENSMUSG00000087543	Gm16576	-	predicted gene 16576	ncRNA	5.03204994310761	4.88785069802428	5.06380057663371	4.88127393102702	4.71241216129719	4.76521424011916	4.6520221010845	4.75078334572722	-0.495599926235386	0.129897398481225	0.401213578932313
Merged-chr17-50419057-3	chr17	50418945	50419145	+	904.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS4-int|LTR|ERV1	-90502.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	3.42190162440947	3.13762824581536	3.16388635008674	3.33534971214085	3.97506699554555	3.53872665468693	3.7174719709432	3.63639714385908	1.50109078656015	0.00402839234976818	0.0402720420033918
Merged-chr6-39562855-4	chr6	39562784	39562984	+	955.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5050.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	4.63142982533843	4.39656235816861	4.63218206426972	4.65737957669314	4.4682100133598	4.64372929906554	4.31505027477644	4.70290078081438	-0.1108706336486	0.760951852933106	0.906431126096988
Merged-chr5-41449663-4	chr5	41449572	41449772	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	258019.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	4.60080551134624	4.6434152046985	5.07846696898624	5.56053875473974	6.05914216558813	6.11731185666463	6.49762420594225	6.40360966246627	2.00797754588161	1.42017743878915e-07	5.89427463064565e-06
Merged-chr6-125215499-4	chr6	125215410	125215610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009496)	promoter-TSS (NM_009496)	-71.0	NM_001080557	22317.0	Mm.32321	NM_009496	ENSMUSG00000030337	Vamp1	Syb-1|Syb1|VAMP-1|lew	vesicle-associated membrane protein 1	protein-coding	8.01545493273253	7.91078971320973	7.64222591942264	7.53904051504686	7.70792534587336	8.06473138293816	7.85638830633958	7.76155028413949	0.0869181650654692	0.651235285883933	0.853855396950078
Merged-chr13-43304302-4	chr13	43304202	43304402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033399)	promoter-TSS (NM_001033399)	-130.0	NM_001033399	328232.0	Mm.441399	NM_001033399	ENSMUSG00000051335	Gfod1	9630032O13|AI850995	glucose-fructose oxidoreductase domain containing 1	protein-coding	6.29548760261198	6.42715587647199	6.5655509166029	6.85310126820281	6.46888195378666	6.49433034940007	6.84336082522166	6.82209216674432	0.138049226691648	0.566611553347913	0.807951645949796
Merged-chr5-93129657-4	chr5	93129552	93129752	+	866.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009818, intron 1 of 9)	intron (NM_001009818, intron 1 of 9)	36236.0	NM_001347377	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	3.89979002851334	4.01958899847082	4.00508305147321	4.58723237457506	4.08403230500359	4.22630064242645	4.03731491801249	3.9515197512776	-0.266873883883741	0.563514264763111	0.806384709828381
Merged-chr6-34682247-4	chr6	34682141	34682341	+	947.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 2 of 13)	intron (NM_001347100, intron 2 of 13)	-27203.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	4.57162442939608	4.44915771369562	4.57235331882602	4.45381228747264	4.68080174729589	4.85876531718272	4.51054391973642	4.60921505627586	0.358713716981643	0.305672017967128	0.61805609086959
Merged-chr11-118270442-4	chr11	118270325	118270525	+	944.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033528, intron 13 of 20)	intron (NM_001033528, intron 13 of 20)	19819.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	5.09221679913874	5.17277844305038	4.7900787175332	4.7513655810472	4.85830417748745	5.00106500787993	4.42454451157646	4.62529466858426	-0.426822397052191	0.239291000880555	0.549703033561985
Merged-chr19-3685985-4	chr19	3685904	3686104	+	877.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008513, intron 1 of 22)	CpG	560.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	3.98237975919368	3.8645382364314	3.6012593665497	3.75223894961604	4.08934293280856	3.89934769119877	3.81714658387882	4.34635987569298	0.691701513596358	0.126877924680156	0.396202676178328
Merged-chr7-19843766-4	chr7	19843667	19843867	+	957.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8236.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	4.52141195445034	4.65704809129697	3.89316697514228	4.21945425874558	4.43137392439111	4.44303676406832	4.38153400383046	4.39881595046028	0.144994730574913	0.726111990752339	0.891025770427008
Merged-chr8-23208437-4	chr8	23208330	23208530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018743)	promoter-TSS (NM_018743)	23.0	NM_018743	102247.0	Mm.200898	NM_018743	ENSMUSG00000031545	Gpat4	AU041707|AW545732|Agpat6|Tsarg7	glycerol-3-phosphate acyltransferase 4	protein-coding	7.33510374813235	7.351761681292	7.46406384725758	7.70720445403413	7.23971363821235	7.11671693762323	7.76711822504615	7.15389439906177	-0.177994090426111	0.4191493515455	0.712251159515261
Merged-chr13-116987434-4	chr13	116987320	116987520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	LTR31|LTR|ERV1	38096.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	6.11521407278002	6.26109708101869	6.23714974010416	6.526003967001	6.18764331293172	6.27147287277159	6.22422454011963	6.19370952071726	-0.143825562973305	0.536331628216766	0.790351309776846
Merged-chr13-107057262-4	chr13	107057165	107057365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34695.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	5.74317915189664	6.22330219707406	6.03083074926599	5.445746300946	6.48562509737648	6.38444938536173	6.02094026860544	5.84288252623917	0.517220237329875	0.0838094467922269	0.314800665605484
Merged-chr10-79996446-4	chr10	79996353	79996553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1155.0	NM_001347081	27403.0	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	6.68576483685704	6.87445191136068	6.76170687057162	6.80520124641856	7.00351314419165	6.8480961198938	6.97596269982846	6.68220195544835	0.144491067961414	0.469516960785146	0.748378822236993
Merged-chr8-115568571-4	chr8	115568462	115568662	+	943.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138332.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.02341521369848	4.64974966026929	4.69170520439078	4.70299538223714	4.40719863324759	4.57133872990222	4.50905433875583	4.72608498141491	-0.471134084745412	0.187719116458672	0.486108305395706
Merged-chr8-83768749-4	chr8	83768652	83768852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-27441.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	5.84712921028468	5.67381367207635	5.93526882131445	5.99354189838257	5.68754308021123	5.16514915161198	5.72531044712879	5.79809309946042	-0.412971786387665	0.140786398035059	0.417334458842973
Merged-chr17-81703944-3	chr17	81703840	81704040	+	983.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	34447.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	4.07256921320468	4.60849838012948	4.07313195131058	4.40108148580989	4.65551765197737	4.61945311397506	4.46789031384221	4.12402027026194	0.390141207901245	0.351434450489332	0.658889839362049
Merged-chr11-79625026-4	chr11	79624933	79625133	+	941.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	intron (NM_175543, intron 3 of 14)	-1870.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	4.42896120653698	4.42725668521914	4.34011271866556	4.38722669032547	4.71351674022801	4.37166418568899	4.49259108524797	4.73237255710771	0.446491561187436	0.218787549632251	0.526099759983582
Merged-chr7-143086520-3	chr7	143086406	143086606	+	888.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020277, intron 5 of 24)	intron (NM_020277, intron 5 of 24)	8136.0	NM_020277	56843.0	Mm.286668	NM_020277	ENSMUSG00000009246	Trpm5	9430099A16Rik|LTrpC-5|Ltrpc5|Mtr1	transient receptor potential cation channel, subfamily M, member 5	protein-coding	3.42763072723145	3.31519925731957	3.54423412664773	3.46454139052227	3.6878722477192	3.76918140789837	3.68524408780571	3.74705233245784	0.889993727118396	0.060837873728927	0.260693456995443
Merged-chr11-115164592-4	chr11	115164513	115164713	+	962.3875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	1272.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	4.75568574299973	4.36630505420255	4.99178827432383	4.64665277129254	4.87807676430479	4.45146462559655	4.90472666116292	4.67723915263843	0.096085308419192	0.795560384424512	0.920897975671128
Merged-chr13-81132098-4	chr13	81131943	81132143	+	953.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	167969.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	3.87642933625671	3.87887121801163	3.92332312787474	3.61125078565909	3.6419078218838	3.84627458116283	3.71201686914124	3.614511134835	-0.341625078397952	0.464960419833413	0.745711378465558
Merged-chr10-96035250-4	chr10	96035155	96035355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001932, intron 22 of 28)	MTEa|LTR|ERVL-MaLR	94592.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	6.82992864765295	7.16401188829522	6.74388804066349	7.17997388875855	6.74688299757047	6.84385533114571	6.82412604992879	7.00887638335857	-0.212156088750231	0.317641254044703	0.629592752581639
Merged-chr19-41313922-4	chr19	41313820	41314020	+	957.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-49916.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	5.02399490014145	4.8829587615095	4.65454568332716	5.0928548578877	4.9803683498433	4.55305820581177	5.25799512307653	4.65158915339459	-0.0715410499998826	0.844469619098155	0.941018583157799
Merged-chr4-43975069-4	chr4	43974970	43975170	+	913.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 4 of 4)	intron (NM_027450, intron 4 of 4)	-8434.0	NM_001002787	442829.0	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	4.57082322278571	4.30124456900802	3.91305572119562	4.25968437856678	3.93456009907445	4.39021314836009	4.15369879957685	4.16934711910488	-0.28971897513082	0.500738229231842	0.76900937297172
Merged-chr9-57485936-2	chr9	57485836	57486036	+	985.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17876.0	NM_001301635	56807.0	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding	3.37868903330259	3.31008850442002	3.65038355735813	2.86045778560387	3.42714623653197	3.30173274910202	3.58452231148203	3.95080302272263	0.86112552316362	0.148833960816855	0.430746567150915
Merged-chr1-135685154-4	chr1	135685041	135685241	+	823.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34922.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	4.33609671635727	4.18212272682705	4.17323362489844	3.98786927972404	4.04238794888689	4.10851469378578	3.80960244951656	3.93153753568443	-0.492654373479294	0.250182729793456	0.561249063980067
Merged-chr2-90559111-4	chr2	90559020	90559220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	21527.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.64579942680333	6.76990687185172	6.28879439274418	6.22828346639391	6.48363686374566	6.77719115077971	6.53689163606747	6.37919101453803	0.0791420013204473	0.743406357980891	0.89894073126818
Merged-chr4-32238628-4	chr4	32238522	32238722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-178813.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	6.63392078391811	6.73411351829367	7.19056591593471	6.90775180328066	6.3547472310448	6.47747827420528	6.50473709484566	6.51661912706422	-0.608694433688403	0.00615211320489651	0.0552696283997638
Merged-chr4-121016651-2	chr4	121016551	121016751	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	596.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	2.77823247177619	2.75708465632535	2.96924712803168	2.66472195486519	2.92179530069549	3.01819360933718	2.9578569133808	3.08059969458321	0.921080270362609	0.12482674380447	0.392172737029896
Merged-chr15-86278720-4	chr15	86278604	86278804	+	841.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358062, intron 1 of 9)	intron (NM_001358062, intron 1 of 9)	1029.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	4.10733130012487	4.0929166642311	4.10795566381948	4.35202732874166	3.9224702623124	4.0873600388441	3.79032776916162	3.85826220715995	-0.711876249994965	0.0980242326224507	0.343090300315972
Merged-chr19-9917962-4	chr19	9917884	9918084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18451.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	6.03368010397481	6.26615071813341	5.8519599961962	6.33748747404236	6.16920300878969	5.66649561366585	5.82226819317808	6.11270517739569	-0.281947220362169	0.291667837680227	0.604015740544088
Merged-chr5-102031066-4	chr5	102030959	102031159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	38862.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	7.36727190206234	7.22257111214648	7.41696691534799	7.746117584791	7.04985331709368	6.93645920634433	7.48888692447774	7.05111292292404	-0.423083605844021	0.0539828966915294	0.242609458492636
Merged-chr10-19047581-4	chr10	19047494	19047694	+	937.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32184.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	5.05442827708951	5.48005785180459	5.21791032607957	5.01818179251378	5.39148083248409	5.39076943177624	4.76442344287441	4.82525342414506	-0.124136406510501	0.722882372223456	0.88928524667289
Merged-chr5-24578793-4	chr5	24578687	24578887	+	948.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1320.0	NM_001190443	27407.0	Mm.21629	NM_013853	ENSMUSG00000028953	Abcf2	0710005O05Rik|Drr3|E430001O06	ATP-binding cassette, sub-family F (GCN20), member 2	protein-coding	4.79748634182367	4.81008754680231	4.4523944003822	4.75786178249035	5.18135960551988	4.81403645150439	4.81264933813375	5.21129528437093	0.619379451515581	0.0699705545726221	0.283075713534425
Merged-chr6-113343916-4	chr6	113343779	113343979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133926)	promoter-TSS (NM_133926)	43.0	NM_133926	52163.0	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding	5.78941445766261	5.71631610739459	5.85757714026877	5.76390588843158	5.32945358451889	5.50170227146668	5.3919443327049	5.80907194235367	-0.450481779919589	0.097720052987927	0.342552384075643
Merged-chr7-70099220-4	chr7	70099124	70099324	+	986.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	238598.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	5.26939445697625	5.38549985541741	5.55353795145987	5.60166009658957	5.22869360199934	5.31382061826324	5.47406674987186	5.23457598363336	-0.280200532434755	0.328760798453591	0.640144325858488
Merged-chr2-29053119-4	chr2	29053012	29053212	+	970.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166705, intron 1 of 5)	intron (NM_001166705, intron 1 of 5)	1954.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	5.23893917433731	5.07584847742796	5.29701577576754	4.51916369158941	5.37030662242146	4.92639085251546	5.27028570851049	4.8260290968958	0.140707260296949	0.704460427256187	0.88127019884038
Merged-chr8-123924945-3	chr8	123924883	123925083	+	721.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172288, intron 12 of 25)	intron (NM_172288, intron 12 of 25)	24282.0	NM_172288	234865.0	Mm.267812	NM_172288	ENSMUSG00000039509	Nup133	mermaid	nucleoporin 133	protein-coding	3.64879450808163	3.72894572815288	3.80085070751733	3.26549348457866	3.59973717676033	3.59472709390168	3.87487632653284	3.6996657786253	0.253063958475034	0.616479565512144	0.835021864768581
Merged-chr4-32560441-4	chr4	32560378	32560578	+	972.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_026843, exon 5 of 5)	non-coding (NR_026843, exon 5 of 5)	11184.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	4.41524909073755	4.18892620051769	4.96491005611186	5.26593176015457	4.07103799803664	4.11907166907418	4.81602973062174	4.50127688468921	-0.813554526846567	0.0905283592472443	0.328643753907258
Merged-chr18-9212178-3	chr18	9212083	9212283	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008058)	promoter-TSS (NM_008058)	-673.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	5.59762770928054	5.12879497953309	5.41476554788665	5.81961719288256	4.25987363098971	4.32470984824851	4.34406219158667	4.4143506644731	-2.4984749858448	3.35616528343845e-11	2.77132817528846e-09
Merged-chr13-113669865-3	chr13	113669768	113669968	+	864.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6192.0	NM_019960	56534.0	Mm.41410	NM_019960	ENSMUSG00000051456	Hspb3	2310035K17Rik|AI844863|Hsbp3|spb3	heat shock protein 3	protein-coding	3.92123855130956	3.84660932112791	4.05498252845348	4.0428710005225	3.82144493569129	3.59521690160425	3.53155272866594	3.82233187283387	-0.77983574200894	0.0934320792867796	0.334342263916027
Merged-chr11-84462967-2	chr11	84462867	84463067	+	660.525024	f1_balb.idr|f1_c57bl6.idr	intron (NM_019816, intron 9 of 12)	ORR1D2|LTR|ERVL-MaLR	50534.0	NM_019816	56321.0	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	3.43873829100487	3.41851893375306	3.70243280708614	3.9560906592957	3.17715351621912	3.49459043441751	3.1732923155461	3.74676351883832	-0.784057903941806	0.172580992461137	0.466102920219742
Merged-chr17-28015171-1	chr17	28015071	28015271	+	695.0	f0_balb.idr	intron (NM_181413, intron 12 of 24)	intron (NM_181413, intron 12 of 24)	65413.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	3.53949647543735	3.49124377973523	3.7293996012202	3.50165063035936	3.23292516410661	3.30171188478506	3.24424434147718	3.37489140718383	-0.988301233870863	0.059009887600899	0.255864083183747
Merged-chr11-100738313-4	chr11	100738204	100738404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024456)	promoter-TSS (NM_024456)	-89.0	NM_001305003	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	8.49081239890897	8.76248234221508	8.40504114896989	8.36752815080588	8.55563321094828	8.60894233148808	8.67836424684542	8.3400124305009	0.0472118762366474	0.78151186443687	0.914926993310043
Merged-chr10-127597484-4	chr10	127597399	127597599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	23649.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	6.41857370698869	5.9382149127045	5.99443842068664	6.01801103906679	6.10023484567323	6.055926384465	6.04846209500957	5.74859736076024	-0.155382921154816	0.542224153404001	0.793691778334718
Merged-chr2-167925175-4	chr2	167925059	167925259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7168.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	8.74305120108733	8.94409697142309	8.72349132807964	8.77561430084299	8.4042190740317	8.60740238914735	8.81187482972021	8.53656172582081	-0.25645173002063	0.111213613262758	0.368497988009955
Merged-chr1-34843435-2	chr1	34843335	34843535	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160235)	promoter-TSS (NM_001160235)	-385.0	NM_001160236	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	4.16151027810796	4.92592131107556	4.00645675550366	4.08777958891212	4.51403590404478	4.28950932717517	4.09487464679916	4.10981110513652	-0.202638288885414	0.667200169061131	0.862274690130043
Merged-chr16-18289368-4	chr16	18289270	18289470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033324)	promoter-TSS (NM_033324)	-202.0	NM_033324	94223.0	Mm.447352	NM_033324	ENSMUSG00000022718	Dgcr8	D16H22S1742E|D16H22S788E|D16Wis2|Gy1|N41|Vo59c07|mir-1306	DGCR8, microprocessor complex subunit	protein-coding	8.90688739718447	8.98901666337019	8.9707356302869	8.87815110114493	8.82920466022775	8.91241843750602	9.15300997313433	8.85272885993263	0.00789924833735685	0.957946610377866	0.984986374576903
Merged-chr11-4232813-3	chr11	4232704	4232904	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3981.0	NM_001013365	18413.0	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	6.2312714361155	6.45648452879527	7.21054432775509	6.53689381092733	3.8876190092062	4.433529945339	4.39005303703582	4.40807860226964	-4.94488382965476	1.54835609918089e-26	1.17245147642124e-23
Merged-chr18-49609445-3	chr18	49609346	49609546	+	930.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86157.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	4.35616191198268	4.13207954950904	4.13227927016177	5.07575963076451	4.22453375809809	3.79099857039787	4.01374789572307	4.07989040355687	-1.13309323502442	0.0217184670918843	0.135237404350733
Merged-chr4-74271411-4	chr4	74271324	74271524	+	880.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 2 of 20)	intron (NM_001356561, intron 2 of 20)	19545.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	5.06784209318082	4.36438350143945	4.63885202688675	4.86594911168872	4.52875510071039	4.73216288667845	4.20752807884345	4.67458778782774	-0.460055478437688	0.242899320221357	0.553825700366326
Merged-chr5-111192109-1	chr5	111192009	111192209	+	900.0	f0_balb.idr	intron (NM_001267622, intron 6 of 22)	intron (NM_001267622, intron 6 of 22)	-138588.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	3.53780314776248	3.58844367915252	3.71883612690197	3.74808151991733	2.93419781563291	2.88168735729624	2.92421868671392	2.93088986053926	-3.34032812160124	3.36104396617439e-06	0.000104106069829559
Merged-chr7-139949981-4	chr7	139949888	139950088	+	761.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6132.0	NM_009482	22286.0	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	3.57183772909239	3.87535561758432	3.80255527996475	3.75053855513057	4.14225814914462	3.97530659440358	3.78725317666039	4.08320637075538	0.70843430108277	0.11112528846092	0.368291051234337
Merged-chr19-5460636-4	chr19	5460521	5460721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253832)	promoter-TSS (NM_001253832)	14.0	NM_021438	58249.0	Mm.329656	NM_021438	ENSMUSG00000024911	Fibp	2010004G08Rik|2010005N21Rik|3010027N18Rik	fibroblast growth factor (acidic) intracellular binding protein	protein-coding	5.64905307569915	5.63650082779307	5.13571541176589	5.31297450355848	5.50477159418683	5.84776493537116	5.66983905612511	5.56912924435037	0.347037019888155	0.229091466774657	0.538010661957944
Merged-chr11-114968939-4	chr11	114968788	114968988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8471.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	7.11227189043661	7.32303773811041	7.43291617118103	6.79651656237001	6.6636380793983	6.70963239571958	6.94630116807784	6.82941090898001	-0.539464842802834	0.0170526310341454	0.114855149922354
Merged-chr16-55817153-2	chr16	55817053	55817253	+	925.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 6 of 12)	(T)n|Simple_repeat|Simple_repeat	4985.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	2.8789018353401	2.95582929364715	2.62272279880676	2.14931400281753	2.71137195690973	2.80168303450571	2.74681332673972	2.75573943179632	0.240997805590271	0.767919855479377	0.909224339615052
Merged-chr9-14893628-3	chr9	14893530	14893730	+	812.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176807, intron 4 of 4)	MTEb|LTR|ERVL-MaLR	10321.0	NM_176807	64931.0	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	3.45064933380928	3.69764116258452	3.94196785666289	4.24766399913151	3.599006802607	3.81075997359454	3.78226942989756	3.79578058335925	-0.399847271893949	0.436282657956065	0.72505818409614
Merged-chr12-111436676-7	chr12	111436552	111436752	+	978.7261960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6009.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	3.70463395004984	4.08432710758876	3.64816558795899	3.44784431781564	3.75633971541436	3.88068525519654	4.10949380102407	3.8602819343269	0.489713637517475	0.312516972426465	0.624504855620566
Merged-chr19-56375713-4	chr19	56375597	56375797	+	856.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008733, intron 11 of 41)	B4A|SINE|B4	14341.0	NM_198059	18175.0	Mm.386769	NM_008733	ENSMUSG00000049134	Nrap	-	nebulin-related anchoring protein	protein-coding	4.10538370370195	4.15412653951873	4.41690989399793	4.52454744530423	3.99245483011152	4.32902527163016	4.31583451134864	4.2459486026599	-0.259099972861559	0.5303611342751	0.786525451847713
Merged-chr3-9826333-4	chr3	9826245	9826445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	7334.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	6.01973136286898	5.44360189489277	5.1616980103729	5.99327132366424	5.57264139930142	5.34490072869043	6.13573562601157	5.82763250700993	0.065236870475776	0.848841022005821	0.942893227193813
Merged-chr16-92418464-2	chr16	92418364	92418564	+	993.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	ORR1A1-int|LTR|ERVL-MaLR	-18386.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	3.42029301801908	3.4363612996292	3.52733483545193	3.23092917984201	3.46817369767506	3.21950137823303	3.35143029021285	3.62340187273755	0.0972112350275816	0.852895136906326	0.944672349828292
Merged-chr9-90258295-4	chr9	90258190	90258390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	12479.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	7.0791905553711	6.44323010256337	7.39874836172428	7.28275691528182	6.77676004555001	6.7111905674927	7.12372090116119	7.03985647771489	-0.247857627485887	0.33346565883689	0.644188029374994
Merged-chr7-125420355-2	chr7	125420253	125420453	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24267.0	NM_029842	77035.0	Mm.307239	NM_029842	ENSMUSG00000030752	Kdm8	3110005O21Rik|Jmjd5	lysine (K)-specific demethylase 8	protein-coding	3.14043585568092	3.13015711808778	2.95140598141358	2.81847506200675	3.23377529191307	3.25283275103193	3.12897854605601	3.25153379254898	0.847162691065756	0.13445662508481	0.4081057574053
Merged-chr4-149104078-4	chr4	149103956	149104156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010044)	promoter-TSS (NM_010044)	-86.0	NR_104263	13347.0	Mm.41433	NM_010044	ENSMUSG00000028974	Dffa	A330085O09Rik|DFF35|Dff45|ICAD|ICAD-L|ICAD-S	DNA fragmentation factor, alpha subunit	protein-coding	6.46529831329017	6.47385623879506	5.9262625375357	5.85963508976097	6.35313940974873	6.05557843017247	6.31900007619167	5.87302806180831	-0.0500458370166103	0.858000068212709	0.946496029407037
Merged-chr4-97751973-4	chr4	97751887	97752087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	CpG	-25639.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	6.75821171452032	6.6651387616519	6.93225156319957	6.7921889644796	6.68881361034345	6.70215386421221	6.80742160886625	6.48551881935461	-0.159407171079313	0.436240390028947	0.72505818409614
Merged-chr2-132586065-3	chr2	132585964	132586164	+	915.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7816.0	NM_001355652	74182.0	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	3.48001395451478	3.7287197704362	3.84619521529914	4.16113261992424	3.44840675762473	3.32743346983207	3.63539586338534	3.59397709866845	-1.05370984755794	0.0462629748438822	0.220973848235988
Merged-chr11-5838027-4	chr11	5837924	5838124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017401)	promoter-TSS (NM_017401)	-8.0	NM_017401	54125.0	Mm.260194	NM_017401	ENSMUSG00000020474	Polm	AI462166|B230309I03Rik|Tdt-N	polymerase (DNA directed), mu	protein-coding	8.067242829755	8.33510405368312	7.81822685347289	7.67788511823599	7.90211702548342	7.83162281409799	7.93879239066994	7.60397585197268	-0.217624317751238	0.286535571425994	0.598190803300508
Merged-chr11-101984250-4	chr11	101984170	101984370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028207, intron 1 of 2)	intron (NM_028207, intron 1 of 2)	521.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	7.78582768346247	7.95103384368385	7.43696159899738	7.28955678610268	7.91779381245035	7.86937369627203	7.74165406364902	7.63630795077334	0.211452020439806	0.311230696907408	0.62324859559111
Merged-chr4-6367036-3	chr4	6366898	6367098	+	920.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	1318.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	3.57431755796607	4.08938945045998	3.85539904686436	3.86693942695758	4.18030147713374	3.69166707258696	3.88845611868954	3.85317920478564	0.178833159565982	0.704961938950602	0.881563627356675
Merged-chr5-107868518-4	chr5	107868397	107868597	+	888.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 1 of 17)	CpG	6610.0	NM_007964	14020.0	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	4.43103916613074	4.3101732516051	4.68237393496696	4.18222855377629	4.00225844921912	4.24501284724821	4.15048176815518	4.25963594172178	-0.592655381240127	0.149519823323309	0.431777928290641
Merged-chr11-82177966-2	chr11	82177866	82178066	+	673.983337	f1_balb.idr|f1_c57bl6.idr	intron (NM_011329, intron 2 of 2)	intron (NM_011329, intron 2 of 2)	1846.0	NM_011329	20290.0	Mm.1283	NM_011329	ENSMUSG00000020702	Ccl1	BF534335|I-309|P500|Scya1|Tca-3|Tca3	chemokine (C-C motif) ligand 1	protein-coding	3.17163297868689	3.41699062887243	2.96066094986631	2.98769515711558	3.38032013801491	3.73242090491755	3.50009284788114	3.40879355586795	1.30682310436747	0.0187662437240913	0.122661476907312
Merged-chr5-34535181-4	chr5	34535147	34535347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	-8118.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	6.71257022733501	6.98968588732604	6.74235566028546	6.39500414169318	6.53229228050948	6.76869284547994	6.44240344228528	6.45329346664266	-0.235186966598723	0.315027045193946	0.626983930058346
Merged-chr16-44120309-4	chr16	44120203	44120403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	18956.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	5.36697678132154	5.21809543848381	5.47415801318384	5.4020963495434	4.89624662843269	5.19555611384098	4.99485325512428	5.15359039469378	-0.584450148997065	0.0509998152961738	0.234321963140095
Merged-chr7-49759173-4	chr7	49759102	49759302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146052)	promoter-TSS (NM_001146052)	96.0	NM_001146049	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	5.82333824922738	5.48367937044795	5.93250162267746	6.03738020550923	5.48655431199316	5.30106393088058	5.81686258139944	5.48617904577654	-0.513094165077325	0.0759500792196946	0.297746467069617
Merged-chr7-87926484-9	chr7	87926385	87926585	+	785.523804	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081414, intron 4 of 9)	intron (NM_001081414, intron 4 of 9)	342317.0	NM_001143834	108071.0	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	3.58324148237487	3.62491842944104	3.82417197917137	3.78412917766819	3.35562713323974	3.25968938669812	3.51599510775601	3.52774081424271	-0.976788194976009	0.0541155914337376	0.242899084541683
Merged-chr11-23665941-4	chr11	23665848	23666048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023651)	promoter-TSS (NM_023651)	-13.0	NM_023651	72129.0	Mm.29536	NM_023651	ENSMUSG00000020283	Pex13	2610008O20Rik	peroxisomal biogenesis factor 13	protein-coding	6.98326313598633	7.06460766589917	6.99726560156023	7.14637551014048	7.36928641213013	7.211587922968	6.91022243213691	6.91364691445087	0.0953262788410292	0.64171574979605	0.848854850593973
Merged-chr1-59496113-4	chr1	59496018	59496218	+	949.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13971.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	5.72257830807475	5.4104567324356	5.50915543272497	5.46070642723663	5.45070701681835	4.89004517131816	4.94250966863819	5.33884328688247	-0.595268611474781	0.0596089698909315	0.257379852463853
Merged-chr6-100286713-4	chr6	100286602	100286802	+	871.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019743, intron 1 of 4)	CpG	656.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	4.23554790728433	4.34021840502947	4.61275526001143	4.42801952324363	4.03246442972782	4.7454314063838	4.47806899702372	4.28125976215974	-0.0251904768533679	0.951176809349981	0.982596027933795
Merged-chr17-5521749-4	chr17	5521658	5521858	+	936.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	29158.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	5.13363943708229	5.27936764384934	5.34088752594219	5.20564673496174	4.78801930405729	4.76760654456073	5.01020827822193	5.28161042606528	-0.509899587721232	0.11137319971462	0.368698618619051
Merged-chr8-22808012-4	chr8	22807932	22808132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2378.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	6.73799648640278	6.72319186679563	6.41517281420897	6.5070927888304	6.54230873655334	6.82658842543062	6.78739710241023	6.77648986179009	0.189136777426195	0.374396543723984	0.677784078373359
Merged-chr14-70774288-4	chr14	70774177	70774377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010071)	promoter-TSS (NM_010071)	-104.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	6.27534956095334	6.26248315659347	6.34890839235714	6.4909858575324	6.04371898247459	6.18474323248923	6.35094500682926	6.09203529841112	-0.288229008733264	0.208579672655765	0.512973965861541
Merged-chr11-103265429-4	chr11	103265329	103265529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	1972.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	5.11939111999834	4.82687891782124	5.24793731727963	5.29821032855517	5.46601152099073	5.15538052694008	5.28082330948495	5.24430944190664	0.283889215133232	0.360043573561536	0.665611988334495
Merged-chr19-44895455-3	chr19	44895363	44895563	+	674.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35656.0	NM_172638	226151.0	Mm.212609	NM_172638	ENSMUSG00000036097	Slf2	3632432H19|Fam178a	SMC5-SMC6 complex localization factor 2	protein-coding	3.1312470765121	3.5067292266331	3.13156576642782	3.57107192311949	3.20642195947447	3.50688413802977	3.97082080044567	3.55454950210817	0.744925785959119	0.209817797760873	0.514330716906745
Merged-chr2-25557785-4	chr2	25557680	25557880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021519)	promoter-TSS (NM_021519)	-120.0	NM_021519	59022.0	Mm.29945	NM_021519	ENSMUSG00000015092	Edf1	0610008L11Rik|AA409425	endothelial differentiation-related factor 1	protein-coding	7.99267030264407	8.08280704015051	7.58057877497687	8.03154183954954	7.94888823966977	8.18497571784354	8.05928872476986	7.87539120079247	0.100420210551764	0.585447725049659	0.818172766912737
Merged-chr19-59074588-4	chr19	59074503	59074703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 1 of 16)	intron (NM_001114312, intron 1 of 16)	1466.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	6.5236103578399	6.47609059069362	6.23875828878884	6.44985004415634	6.44176554490035	6.73132260573885	6.32125109888697	6.21409412475941	0.015206948543095	0.947157528905359	0.981092389800989
Merged-chr11-58955088-4	chr11	58954975	58955175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_134309)	promoter-TSS (NR_134309)	390.0	NM_178218	319162.0	Mm.212549	NM_178218	ENSMUSG00000078851	Hist3h2a	-	histone cluster 3, H2a	protein-coding	6.18625995836041	6.40338078940293	6.56754499592577	5.80143022530702	6.47881941699609	6.4225481567034	6.05112161577392	6.31672039232591	0.113851657693005	0.67341879005873	0.865721645311197
Merged-chr5-92348388-3	chr5	92348283	92348483	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021274, intron 1 of 3)	intron (NM_021274, intron 1 of 3)	506.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	3.72680403098877	4.95639366814611	3.91532587477398	3.06081625172059	4.75017514447726	4.99219035312263	3.9553954242401	3.8530583992264	0.734185115979718	0.477775928894863	0.753915333040868
Merged-chr2-155811930-3	chr2	155811830	155812030	+	806.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010808, intron 6 of 8)	intron (NM_010808, intron 6 of 8)	7273.0	NR_015528	613262.0	Mm.330707	NR_015528	ENSMUSG00000074649	BC029722	-	cDNA sequence BC029722	ncRNA	3.61331533831634	3.68237387679957	3.45007720095618	3.27994268936438	3.70283872782837	3.7316885044835	3.31708964541326	3.44827205837432	0.186715233181856	0.719655466344799	0.888022825078143
Merged-chr7-19003320-4	chr7	19003210	19003410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178757)	promoter-TSS (NM_178757)	-755.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	6.25214565842448	6.02588624268545	5.95459137304396	5.9068491407341	6.62309622157883	6.08471232041555	6.39720607730029	6.70510249755793	0.678262473968391	0.00614258972945807	0.0552258929333201
Merged-chr17-83214295-4	chr17	83214191	83214391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134117)	promoter-TSS (NM_134117)	-992.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	6.5448071096336	6.42220925691249	6.47969799003047	6.69926281551295	6.62674265040683	6.56817323739986	6.54427729199733	6.40530569968353	-0.0143493452492617	0.946393281043979	0.980871723450783
Merged-chr10-118098155-4	chr10	118098047	118098247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43640.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	8.20714377015494	8.52582372351329	8.84778437093039	8.57279114621651	8.32398812926509	8.28386732526373	8.40374717324174	8.32576518374423	-0.28271891398477	0.111650870518798	0.369254379423133
Merged-chr3-86224246-4	chr3	86224135	86224335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030695)	promoter-TSS (NM_030695)	-455.0	NM_030695	80877.0	Mm.439825	NM_030695	ENSMUSG00000028080	Lrba	C80285|D3Ertd775e|Lab300|Lba	LPS-responsive beige-like anchor	protein-coding	5.86097413996818	6.08336983004292	6.01535500040413	6.02833078991816	5.72822191558871	5.86413060231861	5.87765472755917	5.54239680171536	-0.39649108530477	0.112112885029637	0.370075891628389
Merged-chr11-106216434-4	chr11	106216331	106216531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026009)	promoter-TSS (NM_026009)	-64.0	NM_026009	67163.0	Mm.22109	NM_026009	ENSMUSG00000078622	Ccdc47	2610204L23Rik|C88307|asp4|calumin	coiled-coil domain containing 47	protein-coding	7.75346280881157	7.81048331386831	7.29033905700506	7.55104600463948	7.5984500763324	7.53227274845137	7.41849248356067	7.38069243650157	-0.169916778981107	0.376891617129154	0.679502746090072
Merged-chr6-97487379-1	chr6	97487279	97487479	+	1000.0	f0_balb.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	441.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.82047018601456	4.81831979416385	4.92547240963307	4.1601998044167	4.82038729367016	4.67335052935231	5.19428408531471	4.66459220353649	0.324601594930143	0.414115796356987	0.708945638185847
Merged-chr12-54658936-4	chr12	54658856	54659056	+	801.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-2384.0	NM_134054	104725.0	Mm.485026	NM_134054	ENSMUSG00000044408	Sptssa	1110002B05Rik|AA407909|AA409588|AU041967|Ssspta	serine palmitoyltransferase, small subunit A	protein-coding	3.66591032810014	4.21277325426662	3.60530059746019	4.07284021086534	3.9995277553849	4.0070083280759	3.81904135940564	3.98084640106749	0.074726524844442	0.87484270515303	0.952967961745167
Merged-chr11-46804627-4	chr11	46804553	46804753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6146.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	6.62029404613588	7.03527677284432	7.33235128228936	6.99746333681026	6.72025283416022	6.43408748611292	6.52239371697316	6.11533517095988	-0.774829506299809	0.00179816669590471	0.0215220627623678
Merged-chr19-47455228-2	chr19	47455129	47455329	+	696.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	9182.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	2.89216735806655	2.96068934091397	2.95569576300263	2.78586749096967	2.82728888722241	3.1264658709125	3.06125923931627	3.01436774623487	0.486609142224945	0.409737517379727	0.70525942551561
Merged-chr5-103914553-2	chr5	103914453	103914653	+	895.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3294.0	NM_001359986	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	3.1995914578477	3.78915332560735	3.19998006366053	2.66152002049106	3.49559375957247	3.56278625359239	3.72187707233849	3.26328913388056	0.765191985760497	0.251051337185375	0.562325606693871
Merged-chr6-124316143-3	chr6	124316051	124316251	+	899.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170395, intron 6 of 16)	intron (NM_001170395, intron 6 of 16)	11500.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	3.69918018604674	3.73648495743303	3.9384454355246	3.86284819986919	3.75436571948598	3.52043006494145	3.57679635714839	3.69762873842039	-0.511618409798296	0.276498726668226	0.588504895079849
Merged-chr4-41353485-4	chr4	41353376	41353576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355508, exon 1 of 7)	5' UTR (NM_001355508, exon 1 of 7)	1513.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	5.86523984916443	5.75361502237424	5.60809751806238	5.56070729227014	6.19461360198759	6.27368524312279	5.83633987595241	5.99492356605223	0.635849434683335	0.0127336176441478	0.0937684844085245
Merged-chr8-114473784-4	chr8	114473685	114473885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 4 of 8)	intron (NM_019573, intron 4 of 8)	34133.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	6.10836882913137	5.89046450133615	5.96593111258145	6.18215861876479	5.45439868880102	5.67877881590496	6.15284203149108	5.8481882889345	-0.396297836746514	0.149779193167801	0.432202261746095
Merged-chr5-29434702-4	chr5	29434594	29434794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033457)	promoter-TSS (NM_001033457)	27.0	NM_001033457	433864.0	Mm.262815	NM_001033457	ENSMUSG00000001569	Nom1	D5Kng1|Gm1040	nucleolar protein with MIF4G domain 1	protein-coding	6.65690927037831	6.82323166149621	6.56261342923817	6.95295712443258	6.46324985195897	6.44491161279333	6.75438786808358	6.8512218044653	-0.191549012060804	0.3933423250404	0.692447094058087
Merged-chr8-35430745-4	chr8	35430668	35430868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55027.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	5.79919752758692	6.08535371896449	6.09429204223187	6.48363191559728	5.00144006229313	5.239895371587	5.42095728139904	5.64566605289375	-1.35714806020891	8.92458268441752e-06	0.000248724694946811
Merged-chr2-68796690-2	chr2	68796592	68796792	+	830.333374	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-64749.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	4.33779946725163	4.0424513327203	4.03823582999974	4.1189623080958	4.22386999229738	3.89051071544027	3.92177446310001	4.03585126463221	-0.267663079231389	0.529853760151957	0.785996306897363
Merged-chr10-80855235-4	chr10	80855130	80855330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025349)	promoter-TSS (NM_025349)	-21.0	NM_001359148	66094.0	Mm.379101	NM_025349	ENSMUSG00000035215	Lsm7	0910001B06Rik|1110033F18Rik	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	6.6708094423459	6.91965467330382	6.46589863049171	6.61166621354704	7.23372523709463	6.99823092114158	6.98103823282303	7.20112958258973	0.608685653514771	0.00328821275241739	0.0342832423471975
Merged-chr11-90225439-4	chr11	90225347	90225547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24029.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	7.78497533888281	7.88265397066761	7.90217946113558	7.43960820216111	7.70102370705211	7.69366654931239	7.58703291501373	7.36108387482842	-0.211107067398232	0.279465840343471	0.591495502480744
Merged-chr5-143052059-3	chr5	143051975	143052175	+	864.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	60945.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	4.01927261328212	4.25545067617002	3.96674317359209	3.39928614145183	4.89638852284135	4.34318087178233	3.95008582931309	4.21066081099355	1.13665001360976	0.0249636695079176	0.148321288138904
Merged-chr4-39276634-2	chr4	39276539	39276739	+	652.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-173654.0	NM_001081095	75471.0	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	2.502584426459	2.36462241302654	2.50284334042848	2.0484246778414	3.07228192659384	2.76228416884077	3.23531089069672	2.71552679765012	3.5768541983476	9.32403808289782e-05	0.00191481738806285
Merged-chr12-79638134-3	chr12	79638028	79638228	+	754.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	286605.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	3.70416797042572	3.37366235449834	3.13435817968387	3.11890662753694	3.78844609547372	3.44775348296995	3.6415146735583	3.39099026708896	0.785064401400099	0.154370433569966	0.439640422961495
Merged-chr16-16035731-3	chr16	16035679	16035879	+	916.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 7 of 18)	Lx9|LINE|L1	111072.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	2.90270679199427	2.5052308948163	2.70362072925878	3.19383471741509	2.74086196166022	3.13165525420365	2.95202939528831	2.96177307865526	0.397714563683958	0.582120253874325	0.816501953640427
Merged-chr15-81989896-4	chr15	81989809	81990009	+	837.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9369.0	NM_025503	66346.0	Mm.54292	NM_025503	ENSMUSG00000061633	1700029P11Rik	-	RIKEN cDNA 1700029P11 gene	protein-coding	3.96750794800744	4.2489577474255	3.91427445722689	3.97623541656942	4.04858858901677	4.37825660254426	4.09944994520144	4.3692236883489	0.494063524717216	0.236187653689839	0.546185867511015
Merged-chr3-121818990-2	chr3	121818890	121819090	+	945.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-3688.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	3.25431317936436	3.08673374483402	3.25475691399116	3.1409461605533	2.95741616627595	3.4238274602404	3.18534008369941	3.1956916534344	0.0437216700833264	0.938006080657698	0.977460307804652
Merged-chr1-97647778-3	chr1	97647686	97647886	+	909.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355071, intron 1 of 1)	intron (NM_001355071, intron 1 of 1)	13890.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	3.97629425496381	4.02079399543923	3.97687471266389	4.40453788559107	3.83410535680621	3.82734427735704	3.75253662351206	4.06786966542296	-0.686295917863467	0.130956221031343	0.402847904555962
Merged-chr9-120776758-4	chr9	120776638	120776838	+	918.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138512.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	7.3888924414588	7.32380461888346	7.01106271411676	6.55558049217862	5.36148064762289	5.07173147725346	5.08231015022856	5.23241007563668	-3.00043404297536	1.16322320915068e-21	4.81378283744979e-19
Merged-chr16-33416470-4	chr16	33416367	33416567	+	865.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358569, intron 1 of 8)	RLTR40|LTR|ERVK	16022.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	3.52814995247933	3.81573354953375	4.41117882046792	4.00639037338692	4.03867911054977	3.99933152833639	3.80951071815166	3.65317845003329	-0.251189564042046	0.618417078905977	0.836000920352511
Merged-chr1-36568985-2	chr1	36568885	36569085	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	ID_B1|SINE|B4	-10604.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	2.9281813669095	2.90116142569029	2.85715770687529	2.71741436866318	3.72007267523516	3.29653652150645	3.16862636740746	3.12092859368721	2.0716703128672	0.000527036859148766	0.00805193316105388
Merged-chr9-54863676-4	chr9	54863579	54863779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022655)	promoter-TSS (NM_022655)	-76.0	NM_022655	64602.0	Mm.208991	NM_022655	ENSMUSG00000032293	Ireb2	D9Ertd85e|Irp2	iron responsive element binding protein 2	protein-coding	8.05777327708913	8.2902296914568	7.8243078231229	7.64054842288417	8.30272432173423	8.41767133336059	7.91254965489851	7.72984984251369	0.192258711628385	0.39261993061157	0.692052352247535
Merged-chr10-86863654-3	chr10	86863529	86863729	+	748.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 54 of 68)	intron (NM_138673, intron 54 of 68)	84624.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	3.45552683640093	3.47026290838844	3.34100722187061	3.41468434572377	3.6523900543788	3.32595073295797	3.44268503434588	3.55945061071907	0.292107244395263	0.560116687506871	0.804203083823139
Merged-chr15-98580288-2	chr15	98580188	98580388	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001201322, intron 1 of 3)	intron (NM_001201322, intron 1 of 3)	9284.0	NM_001201322	73863.0	Mm.66894	NM_001201322	ENSMUSG00000022993	4930415O20Rik	-	RIKEN cDNA 4930415O20 gene	protein-coding	3.51578026696539	3.61399253774667	3.45866810335819	3.13620765940157	3.49898382895986	3.79517755363824	3.7989211955021	3.51431903591814	0.729827280028487	0.158260656275562	0.445134872270402
Merged-chr10-34030520-2	chr10	34030420	34030620	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7077.0	NM_001162937	692132.0	Mm.383415	NM_001162937	ENSMUSG00000071340	Trappc3l	Bet3l	trafficking protein particle complex 3 like	protein-coding	2.73829681193652	2.84230742818699	2.73864005927513	2.56191792394939	2.66111291791593	2.71434372215498	2.66683273559938	2.53933333141778	-0.355998221310397	0.588474252304239	0.819738713937208
Merged-chr4-53187398-4	chr4	53187305	53187505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27510.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	5.8615704406879	5.96133351280509	5.7403851876662	6.11741399970572	5.84335099228869	5.56942468429082	6.15719483671345	5.76170984552528	-0.141229611987376	0.599003071872013	0.826146116839364
Merged-chr11-58199498-4	chr11	58199398	58199598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018738)	promoter-TSS (NM_018738)	-58.0	NM_018738	16145.0	Mm.33902	NM_018738	ENSMUSG00000078853	Igtp	AW558444|Irgm3	interferon gamma induced GTPase	protein-coding	6.71351889127092	6.09759840204921	5.73842750439648	5.78603393447898	6.26052709284102	5.89064826660986	6.12214042572483	6.00362168558414	-0.0858720247084089	0.778094938914425	0.913550839702925
Merged-chr9-118631801-4	chr9	118631688	118631888	+	866.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 3 of 27)	Lx5c|LINE|L1	25079.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.15286509286011	4.31480955411291	4.10596781284659	4.34382699662524	4.10622687661307	3.76802877880386	4.42287812019313	4.24088833814089	-0.209696110321754	0.625090410237879	0.839735974131569
Merged-chr4-88471735-3	chr4	88471623	88471823	+	649.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32797.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	3.59866998193882	3.50605612437979	3.64916101725557	3.3988042574264	3.56193986881614	3.2938519197019	3.36522614146498	3.69496149299047	-0.134853053178092	0.791778757932491	0.919290448094425
Merged-chr2-125625220-4	chr2	125625123	125625323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081091)	promoter-TSS (NM_001081091)	-110.0	NM_001081091	99100.0	Mm.330545	NM_001081091	ENSMUSG00000068394	Cep152	AI851464|mKIAA0912	centrosomal protein 152	protein-coding	8.49196105940248	8.45960900658793	8.4785153246577	8.63549454364589	8.27447402287867	8.48063170932318	8.6231364165729	8.25094168272562	-0.136818925725582	0.402727951612967	0.700189859986795
Merged-chr15-76799617-4	chr15	76799515	76799715	+	949.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	18555.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	4.95683735492846	5.00507463009131	5.25201278878215	5.04717912806814	4.55218868450563	4.61427349323429	4.86577960145185	4.27172615353068	-0.987142899225057	0.00545577811129978	0.0506372186965976
Merged-chr4-62429856-4	chr4	62429762	62429962	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153504, intron 2 of 2)	intron (NM_153504, intron 2 of 2)	4864.0	NM_153504	76072.0	Mm.169565	NM_153504	ENSMUSG00000063851	Rnf183	5830442J12Rik	ring finger protein 183	protein-coding	5.08188611774253	5.35493780007127	5.21054060716777	5.407921063314	5.0412877751879	4.91824948901244	5.1542936423145	4.86014715892375	-0.53067223890518	0.0864509734492734	0.320676989169612
Merged-chr17-12992469-4	chr17	12992365	12992565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175394)	promoter-TSS (NM_175394)	74.0	NM_175394	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	7.59532622041761	7.9507902029251	8.4678693115999	7.30404130986838	7.71788325931324	7.91967120303523	7.81947268701615	7.69567504809219	-0.142506511025798	0.573503352963621	0.811888602285473
Merged-chr4-66768928-3	chr4	66768824	66769024	+	899.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58627.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	3.78053770200085	3.64475648449385	3.60474188758926	4.33315238817262	3.87786448755798	4.05881042827604	4.14061468750854	3.93422516459717	0.285178648957602	0.573763446769826	0.811973307930812
Merged-chr4-63559517-4	chr4	63559477	63559677	+	887.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144905)	promoter-TSS (NM_144905)	-650.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	3.07870899148075	3.22187508486135	3.50369567359018	3.40158619313518	3.1591595010067	3.3282929527831	3.48887459333527	3.81984083174271	0.530120735730063	0.35199404865891	0.659209734772345
Merged-chr12-98265218-4	chr12	98265105	98265305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3430.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	5.3544272128969	5.23254499156887	5.13904934021574	5.75957104990008	5.12323451152258	4.63856544253779	5.32850632432892	5.37966053472565	-0.474013475931845	0.177035091265562	0.472289587325445
Merged-chr14-20873518-4	chr14	20873412	20873612	+	847.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36850.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	4.33571576195127	4.20165241666408	4.18802669777446	4.342362630571	4.67967910848459	4.76156138185919	4.49027330309343	4.86182177020976	0.960184072957108	0.00878385077824039	0.0718873327272536
Merged-chr3-144692228-4	chr3	144692104	144692304	+	946.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 9 of 10)	intron (NM_001282037, intron 9 of 10)	28131.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	4.56259908559248	4.40605505312846	4.39077177222931	4.63571218649366	4.63587408867657	4.65336067515174	4.61984230791518	4.6759112215443	0.287484682299324	0.415018877307847	0.709431580225999
Merged-chr4-9657511-4	chr4	9657419	9657619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	11643.0	NM_023066	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	7.98334336190695	8.12006816092078	7.99860712555238	7.8515032783146	8.35902693953364	8.32018379247799	8.23817510362919	8.23794292046192	0.390566962908312	0.0133113781368288	0.0966137029062237
Merged-chr7-19295996-4	chr7	19295900	19296100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013648, exon 10 of 10)	3' UTR (NM_013648, exon 10 of 10)	4931.0	NM_001025364	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	5.7773361830112	5.5264429551984	5.14607885548003	5.37360166617836	5.63734584444646	5.80836963756368	5.58067962415433	5.6557849847092	0.342887509532579	0.226109136250067	0.534674004489669
Merged-chr2-38956147-3	chr2	38956071	38956271	+	777.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172854, intron 6 of 7)	intron (NM_172854, intron 6 of 7)	24191.0	NM_172854	241327.0	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	3.43141396956427	3.10290336748516	3.57730687243889	3.27907871325387	3.13232474001131	3.25670832120991	3.1964116746048	3.26586921473616	-0.528441588405147	0.339474585231998	0.648774648981312
Merged-chr10-12573833-4	chr10	12573732	12573932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 50 of 73)	intron (NM_011682, intron 50 of 73)	287903.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	6.32566531121185	6.41306513090529	6.21150659238247	6.37776608347847	6.45584665276177	6.65691259953584	6.41612887706785	5.91461415049999	0.0758348871496085	0.756726373025102	0.904454947855029
Merged-chr8-46151692-6	chr8	46151603	46151803	+	919.5277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11948.0	NM_025747	66756.0	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430	cilia and flagella associated protein 97	protein-coding	4.58578894043045	4.27864918156943	4.5097470880782	4.1690187995139	4.32614811793472	4.27350346304194	4.36526161563252	4.78875666890095	0.163967500092411	0.681862795094682	0.869647747559641
Merged-chr6-116345365-3	chr6	116345267	116345467	+	778.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302385, intron 2 of 6)	intron (NM_001302385, intron 2 of 6)	7345.0	NM_001302383	71779.0	Mm.27064	NM_027920	ENSMUSG00000025702	March8	1300017E09Rik|MARCH-VIII|Mir	membrane-associated ring finger (C3HC4) 8	protein-coding	3.15481055962134	3.27489110836125	3.33835045570647	3.56308509614648	3.32865898001721	3.50710330212192	3.38137704041018	3.44615321165516	0.200811209002045	0.70801532298508	0.882703520735834
Merged-chr6-24627839-4	chr6	24627747	24627947	+	780.654175	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028459, intron 5 of 10)	intron (NM_028459, intron 5 of 10)	30076.0	NM_053098	93677.0	Mm.332941	NM_053098	ENSMUSG00000029683	Lmod2	C-Lmod	leiomodin 2 (cardiac)	protein-coding	3.944818386257	3.36480636213182	4.13474439084891	4.16456075863288	4.10073787128169	3.96129898328488	4.15881586808668	4.25748048892936	0.466263836596352	0.351893745708928	0.659108597595279
Merged-chr3-21953636-4	chr3	21953542	21953742	+	970.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123010.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.06290428829386	4.49585934085276	5.12641176076235	4.98464741336493	5.10689902476553	4.91330755914853	5.18874078704181	4.81316897215932	0.157760086341787	0.647637995657826	0.851730777911948
Merged-chr14-47362616-1	chr14	47362516	47362716	+	551.0	f1_c57bl6.idr	Intergenic	Intergenic	-11244.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	2.59831634668787	2.53941790886494	2.59853692767866	2.74447113244162	3.20323840020023	3.21950964381912	2.86584648876112	3.05045866092224	2.0626487109153	0.00272598065801428	0.029629454599656
Merged-chr7-65644776-4	chr7	65644680	65644880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172310)	promoter-TSS (NM_172310)	-118.0	NM_172310	272396.0	Mm.35127	NM_172310	ENSMUSG00000030515	Tarsl2	A530046H20Rik	threonyl-tRNA synthetase-like 2	protein-coding	8.33881621591637	8.47437302051242	8.35106052030631	8.34566744105735	8.3453149808004	8.49022040259614	8.50708389935081	8.15242737336884	0.00232611280203291	0.988383658619702	0.995445808115911
Merged-chr7-43926182-2	chr7	43926077	43926277	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7594.0	NM_174865	317652.0	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	3.54037449332346	3.70933166983554	3.2609804234998	2.9177829319579	3.24753017926477	3.09835620312998	3.42180476489825	3.63548477861128	-0.0891041677780444	0.884263400915976	0.956477237501683
Merged-chr10-39413529-4	chr10	39413434	39413634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	L1MB2|LINE|L1	43735.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	6.50121184485562	5.92819464706962	6.60659486781504	6.94322708405279	6.00962033579814	5.63828151419926	6.09312530524402	6.03353273518032	-0.905188576147224	0.00195976979423449	0.0230760056548911
Merged-chr17-24165093-4	chr17	24164964	24165164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361533, intron 1 of 2)	intron (NM_001361533, intron 1 of 2)	-1331.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	7.87220163252698	8.13011917323302	7.67841677132788	7.8971252250986	7.69813460696233	7.90554890182499	7.43046596886142	7.66470475542859	-0.290082652764521	0.125228696306092	0.392747986414269
Merged-chr7-126738108-4	chr7	126738016	126738216	+	994.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-21510.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	4.9752050077299	5.06250578117744	4.5701821702907	4.74636538939328	4.97732813068475	5.36993192927665	5.14382766147617	5.04045159596093	0.557475678954488	0.0923097420993288	0.332347755836526
Merged-chr18-38601254-5	chr18	38601178	38601378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011898)	promoter-TSS (NM_011898)	-10.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	6.17903326214792	6.24882843508313	6.34939985651849	6.38534342304129	6.11416014546067	6.27350469615024	6.41774667462187	6.09257933516747	-0.111857697834208	0.624260234554587	0.83935232045714
Merged-chr2-78050078-4	chr2	78049987	78050187	+	940.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1090.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	3.89169869851574	4.14272630077193	4.24284370376749	4.30469756641777	4.28584574793714	4.53696761236352	3.62964096473155	4.40438507465289	0.237592878938725	0.616628240565816	0.83509320741657
Merged-chr13-113794410-4	chr13	113794294	113794494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172595)	promoter-TSS (NM_172595)	-114.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	8.38958683933552	8.48783293074284	8.55631631504094	8.55069295288114	8.61605330121913	8.42063380392556	8.72334800524141	8.33648289682557	0.0459678452926339	0.775750837982284	0.912484406602565
Merged-chr1-152903322-4	chr1	152903225	152903425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359257)	promoter-TSS (NM_001359257)	-679.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	8.27973869636942	8.28877397314	7.76421233621101	7.94830896942687	8.27915157645903	8.48094536843098	8.06960814595265	8.34071924715375	0.271142372981157	0.1554128223251	0.440985819425086
Merged-chr5-77310415-2	chr5	77310322	77310522	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_153798)	promoter-TSS (NM_153798)	-62.0	NM_153798	231329.0	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	7.04290311130666	7.25529408191007	6.82512285835361	7.14523775231906	7.201673494462	7.51094698775281	7.32731435914189	7.25757895851865	0.326629173584279	0.0965771036055524	0.340495401334371
Merged-chr3-98026204-4	chr3	98026118	98026318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	12680.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	5.81983944742321	6.21922859861634	6.13607518278429	5.31974625922348	5.9321943890345	5.94829120397516	5.81464679896485	5.46141031650618	-0.165963664450432	0.600780082092036	0.826967246454786
Merged-chr7-127297319-4	chr7	127297215	127297415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253873, intron 1 of 30)	intron (NM_001253873, intron 1 of 30)	1055.0	NM_001253874	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	7.15808161465254	7.66141864701891	7.1134381843011	6.75715577131958	7.23939296313216	7.36956353000476	7.05406265066478	6.42878138688298	-0.190521974407765	0.493937603955747	0.764669727086131
Merged-chr7-109519073-4	chr7	109518959	109519159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011975)	promoter-TSS (NM_011975)	-136.0	NM_011975	26451.0	Mm.305750	NM_011975	ENSMUSG00000046364	Rpl27a	L27'|L27A|L29	ribosomal protein L27A	protein-coding	8.68318016440014	8.74647578565904	8.57616072627404	8.50093361415001	8.65706354613635	8.83596298264858	8.68324918228668	8.5128474856036	0.0618374535010018	0.69154606866051	0.874549631236956
Merged-chr15-78597042-4	chr15	78596951	78597151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028195)	promoter-TSS (NM_028195)	4.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	6.82374747774697	6.77548822791808	6.93048454425453	6.9705435610593	6.85012048320301	6.69196378294977	6.80393532545701	6.59468774001456	-0.19478148066588	0.32990543635106	0.64124355690967
Merged-chr11-61642371-4	chr11	61642253	61642453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10968.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	5.28738628252126	5.66926801394025	5.41107122392029	5.66781530396582	5.37616146684085	5.4953828402105	5.57350689107622	5.43633969177287	-0.116259779753434	0.679455560467112	0.868431457681343
Merged-chr5-66151774-6	chr5	66151655	66151855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291226)	promoter-TSS (NM_001291226)	199.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.4094384495468	5.52299658433187	5.57911735294582	5.29599732894804	5.48393745077937	5.85162117114825	5.52454589101956	5.76951634353837	0.368886206225694	0.18302284555685	0.479918332064507
Merged-chr3-101601014-4	chr3	101600903	101601103	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	3704.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	4.73009285579159	4.92607911287353	5.09905354370997	5.28025958602906	4.9293592686263	4.99006611004066	5.07408083699145	5.21725811291529	0.0175574517665953	0.957795877369745	0.984917255520481
Merged-chr5-124445358-4	chr5	124445268	124445468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310723)	promoter-TSS (NM_001310723)	-131.0	NM_001310723	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	6.28090069427281	6.14320847106902	5.97994338238723	6.10474431562739	6.11752345537097	6.03841719208936	6.41618416589801	5.88133420850997	-0.000147772744630201	0.99951965616962	0.999758432962781
Merged-chr13-32802639-4	chr13	32802494	32802694	+	978.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030215, exon 1 of 7)	exon (NM_030215, exon 1 of 7)	564.0	NM_030215	78903.0	Mm.286680	NM_030215	ENSMUSG00000021400	Wrnip1	4833444L21Rik|WHIP|Wrnip	Werner helicase interacting protein 1	protein-coding	5.00783821261666	5.07720958517443	4.90588745205772	4.80511793425255	4.92964662555761	5.04329963501802	4.60734080869445	4.97196454988096	-0.0923495881737478	0.779774798577372	0.91413591560747
Merged-chr19-37175300-4	chr19	37175200	37175400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290827, intron 1 of 10)	intron (NM_001290827, intron 1 of 10)	763.0	NM_001290826	208922.0	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	6.13998652906317	5.9373866068723	6.46373304856945	6.36677476451922	5.75493220699463	5.47652630666384	6.00921073130739	5.78094338721289	-0.749916460034878	0.00507839079490777	0.0480748475050858
Merged-chr11-70615183-4	chr11	70615102	70615302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145537)	promoter-TSS (NM_001145537)	-692.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	5.91458258363777	6.06967372908792	5.69933929741166	5.87817875352386	5.80810004671257	5.79527417821187	5.99062485589686	5.5572219653205	-0.163133338171577	0.528099545747161	0.784784282574162
Merged-chr15-98877502-3	chr15	98877409	98877609	+	857.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026967)	TTS (NM_026967)	3905.0	NM_026967	69159.0	Mm.259708	NM_026967	ENSMUSG00000023755	Rhebl1	1810036J22Rik|Rheb2	Ras homolog enriched in brain like 1	protein-coding	3.83355716113898	3.96371840049027	3.52519643501705	3.39453101530163	3.61673657869131	3.69978222077532	3.51195377299755	3.52334512620446	-0.319048617285931	0.532703445580147	0.788231326997748
Merged-chr11-20231375-4	chr11	20231262	20231462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172260, intron 5 of 6)	intron (NM_172260, intron 5 of 6)	18062.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	6.68442597333225	6.60131518312484	7.224321981224	7.26997839407926	6.96264074067088	6.69703998451251	6.72710429173842	6.85577628219583	-0.239416236144921	0.320404070218299	0.632298695555504
Merged-chr3-108050682-4	chr3	108050573	108050773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB1|LINE|L1	-5814.0	NM_001160411	14865.0	Mm.31203	NM_026764	ENSMUSG00000027890	Gstm4	1110004G14Rik|GSTM7-7|Gstb-4|Gstb4	glutathione S-transferase, mu 4	protein-coding	6.41081748452931	6.52406609867245	5.93313904913502	6.55380238526366	6.25612316912982	6.60466516277343	6.50999925927815	6.29888544012537	0.0419912694110516	0.865360809433853	0.949604543216002
Merged-chr17-34248928-3	chr17	34248828	34249028	+	984.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10023.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	3.79898008684125	3.60529634279988	3.66958381795296	3.63142015259027	4.9023221383262	4.35625998516122	4.77577078387097	4.43153449073443	2.45820764721069	1.04824533042779e-08	5.53920225497547e-07
Merged-chr11-23357523-4	chr11	23357443	23357643	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190401, intron 10 of 79)	intron (NM_001190401, intron 10 of 79)	50648.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	5.25622627674516	4.98854169873182	5.19636625121633	5.31180576338279	5.03905642177588	4.93554857760575	5.23105153220144	5.33934647800973	-0.107238435513203	0.728562756186077	0.892094896398975
Merged-chr17-15380808-3	chr17	15380702	15380902	+	832.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4979.0	NM_007865	13388.0	Mm.4875	NM_007865	ENSMUSG00000014773	Dll1	Delta1	delta like canonical Notch ligand 1	protein-coding	3.57256849732991	3.74472062177849	3.86739310131167	3.67518743676477	3.46033018298857	3.57274202527372	3.61254717310648	3.45602731791253	-0.619740510929495	0.200526301384497	0.502543620512921
Merged-chr8-27175725-4	chr8	27175628	27175828	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1082.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	5.13582897549853	5.06917700955052	4.85083008364741	4.9575780451664	5.04740071093234	5.27772910895456	5.11147408763062	5.39233798993988	0.38454198070996	0.210966829218365	0.515655641527902
Merged-chr10-7041178-4	chr10	7041094	7041294	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18009.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	4.22046036876744	3.96522939858841	4.57347617565418	4.44806610954708	4.10046965911049	3.9202897605365	4.15697510282878	4.34708638408721	-0.461108274060897	0.284285642477637	0.596222858869618
Merged-chr7-48913074-3	chr7	48912966	48913166	+	785.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-31470.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	3.73843313616975	3.548873092097	3.93853457129229	3.26139423182704	4.04952348713347	3.91388446954108	3.77582354035787	4.02513046075528	0.933714365021883	0.0588815987704958	0.255494593933499
Merged-chr10-119028864-4	chr10	119028703	119028903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152787, exon 4 of 4)	non-coding (NR_152787, exon 4 of 4)	21696.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	6.0186541341952	6.62816834320238	6.33564692571007	5.89726463770606	6.69261036894831	6.7636608827244	6.49225025081002	6.58355750336047	0.582676208158051	0.0219889656269158	0.136500307087123
Merged-chr10-86884324-4	chr10	86884073	86884273	+	919.62854	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 43 of 68)	intron (NM_138673, intron 43 of 68)	105168.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	2.83049673849451	2.91409987342165	2.61263297481999	3.07139412231309	2.96840333196294	3.06713766817821	3.06299710470865	3.1278047867208	0.739655348044889	0.249307991017539	0.560328612484111
Merged-chr8-25196594-4	chr8	25196515	25196715	+	897.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177089, intron 2 of 12)	intron (NM_177089, intron 2 of 12)	4927.0	NM_199323	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	3.68400540780886	3.9586886302139	3.62860709263681	3.81158359400389	3.78951848691583	3.7454608550158	3.77399917443782	3.8367649038181	0.0135543283028133	0.97617463459962	0.991528225629167
Merged-chr7-88280265-4	chr7	88280195	88280395	+	875.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 1 of 6)	intron (NM_009982, intron 1 of 6)	2210.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	3.82881281305598	3.82003167416963	3.88104322016276	3.70581654338713	4.08437184232605	4.00232184923627	4.00693437880884	3.976192335948	0.616185056730955	0.145485855878745	0.425069277382529
Merged-chr3-25721706-3	chr3	25721590	25721790	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357095, intron 4 of 6)	intron (NM_001357095, intron 4 of 6)	432296.0	NM_001163387	192167.0	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	3.71667689594948	3.84566057395997	3.60169671019551	4.27219898354136	3.65173197984806	4.13593461669122	3.52781604067768	3.87102637025331	-0.244929621993348	0.638445823213117	0.847153284197798
Merged-chr4-123951845-4	chr4	123951746	123951946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34413.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	5.54869805751199	5.85632215481948	6.24100747784515	6.60751633526336	5.89430117063053	5.78891108882748	5.84252933452458	5.91494967998231	-0.44505757196076	0.148838777695927	0.430746567150915
Merged-chr1-45902105-4	chr1	45902012	45902212	+	997.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	23482.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	5.68751958759167	5.35022137981706	5.96723884522294	6.03960952706403	5.19763410543468	5.22886659843698	5.39486067344574	5.26085530050502	-0.91542491599012	0.00251784849911046	0.027915566716228
Merged-chr18-88770666-4	chr18	88770573	88770773	+	926.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123534.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	4.03466553507885	4.31167457977256	3.74421993786899	4.3624830420745	4.43157540616412	4.10553109175509	4.45327153000194	4.39518753306128	0.495862553992717	0.258802355250949	0.570569857886287
Merged-chr4-109000528-4	chr4	109000427	109000627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347169)	promoter-TSS (NM_001347169)	-128.0	NM_001346554	230598.0	Mm.274950	NM_146150	ENSMUSG00000053510	Nrd1	2600011I06Rik|AI875733|NRD-C|Nrdc	nardilysin, N-arginine dibasic convertase, NRD convertase 1	protein-coding	8.57855975833161	8.39994127727523	8.24701396069402	8.38829446937651	8.39689691973277	8.73485738177021	8.47499091828447	8.3499893207462	0.109747950222965	0.512223009068429	0.775701492755237
Merged-chr11-62217840-3	chr11	62217736	62217936	+	755.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029936, intron 12 of 12)	intron (NM_001029936, intron 12 of 12)	-31148.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	3.83176509332127	4.00015341446488	3.88182585064599	4.01850822235247	3.66180950323218	3.84568246937861	3.65754481734546	3.83010618055125	-0.571716640266458	0.202784288243664	0.505320783254999
Merged-chr4-102517236-4	chr4	102517201	102517401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-52759.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	3.52868456026062	3.98038902583363	3.52905631217268	4.28849804195403	4.82991453362564	4.42403616723716	4.80917041414905	4.67492545359793	2.12253720749295	0.0612491194536985	0.261856632446081
Merged-chr14-33398269-4	chr14	33398183	33398383	+	977.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310452, intron 4 of 10)	intron (NM_001310452, intron 4 of 10)	12741.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	5.5086802039979	5.69694528017176	6.0606106665324	5.89332239647346	5.93584508178625	5.46265943912971	6.12231514675577	5.62033673126431	0.0136930397632663	0.96241332396768	0.986542881001127
Merged-chr12-80839167-4	chr12	80839052	80839252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178682, intron 2 of 5)	ORR1D2|LTR|ERVL-MaLR	48620.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	5.07412229414006	4.91461155607831	5.36675936689468	5.4780577185481	5.48357249721967	5.6498686144783	5.25060400672547	5.419621886368	0.380084206792053	0.225366557365042	0.533733694449719
Merged-chr7-127512409-4	chr7	127512308	127512508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024331, exon 1 of 1)	non-coding (NR_024331, exon 1 of 1)	425.0	NM_001304266	100043597.0	Mm.428042	NM_175144	ENSMUSG00000053877	Srcap	B930091H02Rik|D030022P06Rik|F630004O05Rik	Snf2-related CREBBP activator protein	protein-coding	6.48070150614872	6.53831324978807	5.88123906696005	6.08974661424075	6.77699968716205	6.78808392981568	6.88902313368885	6.90725577722943	0.82803481557911	0.000462381041922989	0.00724184077677653
Merged-chr14-45658213-4	chr14	45658125	45658325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039106)	promoter-TSS (NM_001039106)	-82.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	7.95504786020282	8.1269510827396	8.07444982365762	8.11229081381326	8.45535549583583	8.67080965097704	8.40526084848287	8.07568879179114	0.442528745006432	0.0128151094865443	0.0941931720510883
Merged-chr17-34761615-4	chr17	34761517	34761717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ETnERV2-int|LTR|ERVK	-17720.0	NM_009780	12268.0	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	6.41476035780851	6.39392465479631	6.48795065852042	6.24199159297398	6.99699266341805	6.76597656648794	6.86698658801947	7.18770940067639	0.845607752455037	6.14863646578893e-05	0.00134710018321097
Merged-chr2-52741858-2	chr2	52741758	52741958	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019667, intron 1 of 13)	intron (NM_019667, intron 1 of 13)	291.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	4.47449678397869	4.6572674332022	4.78144456761483	4.36832957854274	4.51473704089768	4.60619090306453	4.68900798835538	4.4284305884112	-0.0128476523838836	0.972047840029686	0.989871265506065
Merged-chr18-75244995-3	chr18	75244803	75245003	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 16 of 16)	ORR1F|LTR|ERVL-MaLR	52414.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	3.8010952459917	3.81589162816757	4.18927240529103	4.46143575956958	3.25589688651534	3.28910713237039	3.31219507969698	3.63919152966627	-2.37513653061562	3.09083975268137e-05	0.000745612948534241
Merged-chr14-7977672-4	chr14	7977568	7977768	+	838.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007870, intron 4 of 7)	intron (NM_007870, intron 4 of 7)	16514.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	3.92761795462167	3.96424286046	3.83067206737005	3.77306920905256	4.0587885731445	3.60096016192922	3.53692330389516	4.01623299050334	-0.106355563700557	0.824167513382064	0.932482704694281
Merged-chr5-121602067-4	chr5	121601960	121602160	+	773.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178799, intron 8 of 10)	intron (NM_178799, intron 8 of 10)	-8236.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	4.19642973604679	3.67119594902916	3.5019958720925	3.41413166301281	3.65086987875154	3.79446052581471	3.71148640232979	3.56007261923485	-0.132447833397314	0.799780769196244	0.922665648246429
Merged-chr10-81620436-4	chr10	81620336	81620536	+	961.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6886.0	NM_001163430	50721.0	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	4.52064470735672	4.7800473109658	4.60544234137618	3.62156409686902	4.88289957533181	5.40377244209498	4.49996930139304	4.28201176144326	0.78964630583024	0.113811601541337	0.373103335015803
Merged-chr5-21129772-4	chr5	21129684	21129884	+	894.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46495.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	4.26631871392501	4.2091579835955	4.02080616446895	4.35303067739359	4.40745651006394	4.3475556453676	4.45241024196244	4.26434366191143	0.339653316265171	0.382614514492742	0.684637549504146
Merged-chr12-4038805-6	chr12	4038691	4038891	+	831.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001082483, exon 1 of 23)	5' UTR (NM_001082483, exon 1 of 23)	124.0	NM_001082483	668212.0	Mm.210266	NM_001082483	ENSMUSG00000020658	Efr3b	AI852640|C030014M07Rik|mKIAA0953	EFR3 homolog B	protein-coding	3.70923013880785	4.06409185027021	4.5021564815808	3.71852965595116	3.97055667117381	3.89092718954369	3.9160902040656	4.16392186325477	-0.112851092642605	0.815570379420153	0.928838606005649
Merged-chr7-4073426-4	chr7	4073317	4073517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_033568)	TTS (NR_033568)	-10213.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	5.86782348475293	5.50699277999485	5.52017381723833	5.94993880802712	5.63080716505419	5.57773446990986	5.57525272537221	5.75102056402059	-0.176563912651923	0.521984780066735	0.7817525755964
Merged-chr12-85992643-4	chr12	85992547	85992747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	86394.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	7.11389721629298	7.04635198397099	6.70574159287303	7.26620207775506	6.80004092573824	6.73532577102022	7.07933309981722	6.80570630671906	-0.27745883993638	0.200197317366478	0.502250276780931
Merged-chr4-132494759-4	chr4	132494673	132494873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144907, intron 8 of 9)	intron (NM_144907, intron 8 of 9)	15683.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	7.75986377195162	7.6950328903091	7.81467738691963	7.72326254789445	7.64391474443615	7.72612197220767	7.7542306608976	7.67522302457785	-0.0631748752508072	0.69515194842683	0.876423127992514
Merged-chr2-112367937-4	chr2	112367808	112368008	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026519, exon 1 of 5)	5' UTR (NM_026519, exon 1 of 5)	119.0	NM_026519	68032.0	Mm.220942	NM_026519	ENSMUSG00000027131	Emc4	2610318K02Rik|Tmem85	ER membrane protein complex subunit 4	protein-coding	5.34558479584049	5.3376599137985	5.37460119679435	5.09159048180505	5.17894950426274	4.73417621396867	5.17024565593483	5.57510728018326	-0.149992251618318	0.649871675546816	0.852982039346245
Merged-chr11-51805398-4	chr11	51805295	51805495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42|LTR|ERVK	41732.0	NM_025535	66397.0	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	5.90684198295597	5.9303077901325	5.35269752594515	5.81131731778583	5.7173200167691	5.59556462368633	5.91947365086204	5.47492544598633	-0.140643726578153	0.618736523630182	0.836062966920086
Merged-chr5-122501508-5	chr5	122501434	122501634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110140, intron 1 of 19)	CpG	691.0	NM_001110140	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	5.09995583845317	5.42102163485024	5.16498367842909	4.83722631750867	4.95873122348996	5.30648297614771	4.90129765326193	5.09732808864073	-0.126883870504809	0.702947949315927	0.880452322371581
Merged-chr3-36857739-4	chr3	36857663	36857863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-5343.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	5.66215126944728	5.59456337123511	5.31606548782903	5.63244134078899	5.97039799745625	5.49473052683207	5.92475904800791	5.43871618245588	0.296654820789978	0.3029638283073	0.615482556585475
Merged-chr1-170706257-4	chr1	170706154	170706354	+	895.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081304, exon 16 of 16)	3' UTR (NM_001081304, exon 16 of 16)	61722.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	4.70722220700214	4.65958439023019	4.46492500179182	4.74549244796085	4.38965901797038	4.59578736228026	4.61044362027203	4.8107635231181	-0.118593783116921	0.741107234124955	0.898139463026673
Merged-chr13-49298644-4	chr13	49298538	49298738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	10570.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	6.92856646412901	6.45249596581116	6.7723954971224	7.13012718369271	6.41082266573267	6.35596577905359	6.62128666978187	6.76757413433237	-0.440699623250938	0.0683341495676897	0.27918473378938
Merged-chr10-84622294-4	chr10	84622212	84622412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027423)	promoter-TSS (NM_027423)	-125.0	NM_027423	70428.0	Mm.335007	NM_027423	ENSMUSG00000034453	Polr3b	2700078H01Rik|A330032P03Rik|C85372|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding	5.90409906625162	5.95718391916717	5.90513590469388	6.34251562961281	6.2731453269885	5.95873413005631	6.1672391883821	5.8528154673051	0.0322671262378939	0.902639266361809	0.963848753135321
Merged-chr8-70213202-4	chr8	70213075	70213275	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007570)	promoter-TSS (NM_001007570)	-894.0	NM_001007570	73095.0	Mm.185413	NM_001007570	ENSMUSG00000002346	Slc25a42	2900084M01Rik	solute carrier family 25, member 42	protein-coding	5.95632653931012	5.69441668439809	5.11270541821889	5.85039967552152	6.4955654358386	6.34533774761504	6.69195604378357	6.36269649735319	1.19893827677203	1.96061207868163e-05	0.000499657741312136
Merged-chr16-34000860-4	chr16	34000762	34000962	+	897.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 51 of 59)	intron (NM_177357, intron 51 of 59)	-33824.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	4.49905429957839	4.79924884210539	4.23619065186961	3.93554541298865	4.5980594176404	4.45974167803443	4.39748893960601	4.23363471871299	0.0755091537306276	0.862144491446932	0.947987281539677
Merged-chr8-70139225-4	chr8	70139119	70139319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309645)	promoter-TSS (NM_001309645)	-22.0	NM_001025589	19727.0	Mm.161167	NM_011266	ENSMUSG00000036120	Rfxank	Tvl1	regulatory factor X-associated ankyrin-containing protein	protein-coding	8.50962556443865	8.7061805067074	8.58003303407801	8.29684480001304	8.01313933589084	8.23749729464137	8.1377703263559	8.06786987585159	-0.525078179628818	0.00180111728055151	0.0215537536839906
Merged-chr11-82780250-2	chr11	82780150	82780350	+	642.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291247)	promoter-TSS (NM_001291247)	792.0	NR_126068	100503272.0	Mm.486964	NR_126067	ENSMUSG00000085175	Gm11423	-	predicted gene 11423	ncRNA	3.0627440527698	3.08977957840822	3.22322857950185	2.6486394216232	2.9550774997175	2.92214226221104	2.66197078785803	2.94267494266276	-0.60987443792272	0.357803840777309	0.663866486000028
Merged-chr10-21067340-4	chr10	21067234	21067434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177776, intron 4 of 6)	intron (NM_001177776, intron 4 of 6)	26514.0	NM_001177776	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	4.97986888851162	4.88827208845563	4.94366397646935	5.2485919232474	5.37431182036944	5.19168826199856	5.12605592266369	5.32592934482501	0.411740705519918	0.187102989560483	0.485325013444322
Merged-chr19-3986532-4	chr19	3986437	3986637	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302482)	promoter-TSS (NM_001302482)	-33.0	NM_001302479	71670.0	Mm.29735	NM_027857	ENSMUSG00000024866	Acy3	0610006H10Rik|AA3|AAIII|AW107362|Acy-3|HCBP1	aspartoacylase (aminoacylase) 3	protein-coding	4.66695420940068	4.78889933026148	4.74592181237651	4.60991024567239	4.63145439999101	4.80168457966879	4.89870612627894	4.91935968500784	0.235990199751664	0.481615384104289	0.756719381598145
Merged-chr15-59037824-4	chr15	59037720	59037920	+	948.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	44206.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	5.58221883801081	4.5759337672114	4.78073217820967	5.38106755098125	5.07605895427808	5.00310293274082	5.43565281510256	5.24073681125363	0.0869073289351948	0.820009185676856	0.931122817696306
Merged-chr3-30595573-4	chr3	30595483	30595683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	4287.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	5.92407247805471	6.67747787293122	6.18647276449273	5.63271253117018	6.32227197104143	6.67281576077606	5.87056346492072	6.03626501695096	0.153130663403487	0.635466613558249	0.845728109373985
Merged-chr14-27317362-3	chr14	27317265	27317465	+	861.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 2 of 10)	intron (NM_027871, intron 2 of 10)	-18672.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	3.28353518992858	3.37096345650084	3.34243604274793	3.64797256343869	3.39103438521515	3.33296871642345	3.27251175405398	3.39657470784785	-0.292654045560172	0.581902165797458	0.816431724735813
Merged-chr8-36184273-3	chr8	36184161	36184361	+	920.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28251.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	3.71932647642695	3.65872187365736	3.76713570420215	3.82734510961298	3.39175386554703	3.50329170042568	3.49687745127202	3.50794114894899	-0.919503712726761	0.0585544983820997	0.254540774419169
Merged-chr13-41466386-4	chr13	41466291	41466491	+	927.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	20969.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	4.96281456490625	5.12322227747017	5.29904254253014	5.48725232055919	4.63925722598147	4.95337247269743	4.62777327004084	4.60073759813408	-1.07631246058914	0.00166220227073041	0.0202418982768725
Merged-chr18-52750049-7	chr18	52749969	52750169	+	964.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17742.0	NM_026408	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	4.34184797881851	4.48227725428479	4.34250656821906	4.52464084545775	4.37225880811082	4.4243874775977	4.52658015813497	4.29463498001922	-0.0694136948049621	0.851590650685692	0.944032315176328
Merged-chr1-152766550-4	chr1	152766437	152766637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346119)	promoter-TSS (NM_001346119)	-5.0	NM_026369	67771.0	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	8.11487976440784	8.27239748906184	7.65987576414588	7.88927154360373	7.91077362786352	8.177572289717	8.14930775379372	7.78921666653674	0.0134402516506776	0.946016161713282	0.980724746192965
Merged-chr4-89270680-3	chr4	89270591	89270791	+	766.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	11501.0	NM_001040654	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	3.78602136981469	3.85285517447983	3.64020960657411	3.1993639614848	3.59938129039545	3.18100098423875	3.72311151048145	3.53048795350698	-0.363410685508209	0.519690725848298	0.780280082524181
Merged-chr19-16781711-3	chr19	16781603	16781803	+	737.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173028)	promoter-TSS (NM_173028)	-770.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	3.26524120913968	3.04658302078884	3.15457100565833	3.34915502786341	2.92143114565362	3.20513410053826	2.95857667534381	3.15292587725065	-0.622907249557257	0.284256082260558	0.596212390359036
Merged-chr7-99674991-3	chr7	99674889	99675089	+	829.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175316, intron 7 of 13)	intron (NM_175316, intron 7 of 13)	20820.0	NM_001252531	101488.0	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	3.73659030023432	3.68047474939303	3.7881281844873	4.53203988848778	3.20644295951906	3.49919536090224	3.43564327935533	3.73492743632713	-1.60461152162531	0.00510824120445019	0.0482547446173271
Merged-chr9-61907057-4	chr9	61906875	61907075	+	837.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7535.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	3.10775042006668	3.60130456896471	3.30541350463637	3.31415476296391	3.35286345978294	3.64690757664475	3.29360779354874	3.67325417430554	0.519418726121388	0.338145962307003	0.647796331490298
Merged-chr13-94144206-4	chr13	94144110	94144310	+	894.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	86414.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	4.61706340727757	4.01967654091867	4.88148109102628	5.05094186846896	3.90129389410877	4.02981071721692	4.26542684424135	4.41690975661237	-1.25831722297999	0.0068855660386022	0.0601876096109132
Merged-chr13-9560865-2	chr13	9560765	9560965	+	843.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 9 of 36)	intron (NM_001081426, intron 9 of 36)	202945.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	3.18857354972236	2.91983024110596	3.07757553057515	3.52423299212521	2.84967113841848	2.99744321836787	2.88117388888126	2.81992295479209	-1.38235435030273	0.0317831687831256	0.173955722477055
Merged-chr7-116094306-3	chr7	116094214	116094414	+	630.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019772, intron 1 of 4)	intron (NM_019772, intron 1 of 4)	934.0	NM_019772	56372.0	Mm.24231	NM_019772	ENSMUSG00000030663	1110004F10Rik	Smacp|Smap|sid2057|sid2057p	RIKEN cDNA 1110004F10 gene	protein-coding	3.37079978633172	3.58121567686959	3.42962688815182	3.67938472546369	3.60576141532661	3.42167054591994	3.35945099287314	3.53711235633158	-0.14198227415795	0.780452016437947	0.914508092485582
Merged-chr19-29488240-4	chr19	29488170	29488370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33717.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	6.48153468722225	6.51821876174365	6.92806847774227	6.3870297734762	6.65166007269586	6.72617007001559	6.46659182499967	6.62435478540537	0.0538561556682668	0.812690904369779	0.927656717651261
Merged-chr14-72532278-2	chr14	72532178	72532378	+	886.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	177725.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	3.03774916482223	3.12092222742399	3.20330539929471	2.87857665681893	2.77173931879327	2.95669816002741	2.90520661070792	2.97650582166789	-0.689471723531686	0.25747152989429	0.569254085430381
Merged-chr1-152797490-4	chr1	152797388	152797588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2665.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	5.41126976324331	5.60011960478461	5.1065239698078	5.15145562847479	5.43662765145272	5.38068301718766	4.89806657547341	4.99516938873252	-0.221200208946063	0.502620866459163	0.769788779322088
Merged-chr19-5924885-4	chr19	5924763	5924963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026772)	promoter-TSS (NM_026772)	-47.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	6.93519100997011	7.25866349036155	6.65322603032579	6.55030659323861	6.84926827583389	6.62550344962958	7.15194537496212	6.56653755695744	-0.0741540430671509	0.770222905187594	0.910083821330452
Merged-chr10-93453371-4	chr10	93453252	93453452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313897)	promoter-TSS (NM_001313897)	-44.0	NM_001313897	16993.0	Mm.271071	NM_008517	ENSMUSG00000015889	Lta4h	-	leukotriene A4 hydrolase	protein-coding	7.77018029747155	7.62677902258742	7.5166701251842	7.52867582363092	7.84886359939906	7.43394500338993	7.98917695089583	7.65375843684589	0.186421097020863	0.328314757557052	0.639776497608711
Merged-chr4-150488918-3	chr4	150488814	150489014	+	868.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	163260.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	3.40889206913736	3.13012921977366	3.46212872157447	3.2746128247119	3.04742345078177	3.28646868035696	3.34115434995753	3.60602099506381	0.0363640108310907	0.947995034679241	0.981359015857754
Merged-chr8-72161133-4	chr8	72161015	72161215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023126)	promoter-TSS (NM_023126)	-85.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	9.59721592817067	9.72616904641527	9.58671848724217	9.63842029303006	9.49687580223233	9.62564157323369	9.66015038837205	9.4790527439958	-0.0885612484496046	0.510100925503019	0.774513270041275
Merged-chr15-101165797-4	chr15	101165693	101165893	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8279.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	5.35732692568712	5.28226084474061	5.0744407919434	4.96688858487827	5.24977413006038	5.60863240150854	5.33150271845891	5.1394230422322	0.319580462971949	0.300060980766022	0.612248910735458
Merged-chr6-94222382-3	chr6	94222308	94222508	+	953.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	15034.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	3.77673261320873	4.29642307215943	3.91549037434246	3.99258268180883	3.22955106796352	3.28880898900411	3.23601927743784	3.17090623741448	-2.81423184609473	2.15183760102457e-06	6.97475631162696e-05
Merged-chr11-46774848-4	chr11	46774750	46774950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166631, intron 6 of 7)	intron (NM_001166631, intron 6 of 7)	23682.0	NM_134248	171283.0	Mm.17771	NM_134248	ENSMUSG00000040405	Havcr1	AI503787|KIM-1|TIM-1|Tim1|Timd1	hepatitis A virus cellular receptor 1	protein-coding	6.44924848594789	6.4014382186669	6.25241053731524	6.25771157259094	6.50089758622136	6.17259850719879	6.68470239224487	6.08168868554158	0.0768306187028145	0.750752210348072	0.901855648088396
Merged-chr16-23314934-4	chr16	23314848	23315048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	24478.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	7.8800764033993	7.90339143790902	7.85943850022863	7.77311817045735	7.76922351201188	7.88809500261707	7.80666164585769	7.90474096535933	-0.0135501768309552	0.932358486258542	0.97563407274323
Merged-chr18-80206833-5	chr18	80206840	80207040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178604)	promoter-TSS (NM_178604)	73.0	NM_001042408	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	6.79373437898118	6.31703625715744	6.97908745982804	6.6995959150126	7.49822908769269	7.76962005910976	7.3731815295198	7.77456354352462	1.222302690798	2.38432981984277e-08	1.17368058261818e-06
Merged-chr5-96917068-4	chr5	96916966	96917166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4206.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	6.48914194716844	6.61753208359202	5.8602712334993	5.7952414371045	7.16627344365817	6.99668317180337	6.79870788787828	6.84177944703129	1.05163377970783	0.000104698484083791	0.00211054471781369
Merged-chr9-120601652-4	chr9	120601538	120601738	+	834.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24307.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	4.17042765789148	3.74512029975102	3.5460232442233	3.78196483786864	3.88548686368902	4.21097470251567	4.151592458934	3.99163715103169	0.641008962571699	0.163141082039805	0.452706698401916
Merged-chr2-156008012-4	chr2	156007870	156008070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145352)	promoter-TSS (NM_001145352)	7.0	NM_001145352	320095.0	Mm.442175	NM_001145351	ENSMUSG00000074646	6430550D23Rik	-	RIKEN cDNA 6430550D23 gene	protein-coding	7.96216955934993	7.95881722567627	7.89960491640559	7.85640693071002	7.9305750724809	7.94680979503021	8.26720415002073	7.82698421507706	0.11049555009027	0.52144965964801	0.781432035905523
Merged-chr4-59805784-4	chr4	59805684	59805884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172468, exon 1 of 9)	5' UTR (NM_172468, exon 1 of 9)	134.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	6.86248927306685	6.35243522347584	6.58962400266248	6.52045183817153	6.66577806886204	6.63102421814411	6.9279809184684	6.81936761690395	0.255464165522707	0.244809833894586	0.555884768862855
Merged-chr3-95673892-4	chr3	95673732	95673932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14085.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	7.40524951434687	7.3203657210121	7.33868785358554	7.18777787015956	6.90699479910715	7.14850872598205	7.18789888609231	7.19698887919628	-0.272938917994999	0.147697429438547	0.428995157512705
Merged-chr7-63905962-2	chr7	63905862	63906062	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	L1MC3|LINE|L1	-10895.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	3.20103800740485	3.21327434269182	2.75729588879052	2.9295045540296	2.96720462071444	3.20024921601801	3.07747459649454	3.0275643047055	0.130904241940326	0.827998040644484	0.934007956519098
Merged-chr14-120172199-4	chr14	120172013	120172213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103556.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	4.25720249857296	4.55329563140082	4.7989374391445	4.70512508027905	4.55137312447897	4.62458899831676	4.70664153817561	4.57409244850131	0.0233346581410481	0.949043053449893	0.981680324135998
Merged-chr1-78490313-4	chr1	78490211	78490411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1414.0	NM_011811	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	5.42830090994341	5.50540891347662	5.75432464586125	6.13707349882371	5.41442941585858	5.37494471416475	5.8810205518321	5.86424954890689	-0.172448518654157	0.587239746727966	0.819100437669827
Merged-chr13-9099496-4	chr13	9099404	9099604	+	974.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	5623.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	4.66885285651827	5.13705923349409	4.84133901247955	4.93761193764751	5.25130240175318	5.30300342133205	4.93306535073593	5.64509909783083	0.738622514196659	0.0279892071277654	0.160071008689315
Merged-chr2-6707413-3	chr2	6707293	6707493	+	856.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	14269.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	3.87690091728123	3.20062559407197	3.31588706198458	3.61831001500656	3.10214838936676	3.09472967960843	3.18180599045287	3.37160390369794	-1.23237519096231	0.0358279353201853	0.188021490113181
Merged-chr11-95712827-4	chr11	95712744	95712944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045780)	promoter-TSS (NR_045780)	-90.0	NR_045780	432396.0	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	5.7737452478596	5.38639289375236	5.40000914686575	4.89842528350001	6.00846480854239	5.80286133628193	5.64947889657524	5.92302779399256	0.805786181945388	0.00952651346570819	0.0762324566583072
Merged-chr8-10901151-4	chr8	10901017	10901217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102285, intron 2 of 2)	intron (NR_102285, intron 2 of 2)	1195.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	7.47888780125166	7.32424863105269	7.56777969157343	7.14678897546075	7.51351334581747	7.37329883604612	7.14856689382358	6.95356422425103	-0.145681082015987	0.493020088281991	0.763963269735953
Merged-chr4-132608414-4	chr4	132608311	132608511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30635.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	5.08528416018185	5.15828908868771	5.01724114771489	4.91590720790314	5.1703125238497	5.38486539557095	5.30295097523024	5.04872410554898	0.363095669780106	0.229939267329859	0.539096658041788
Merged-chr2-165061791-4	chr2	165061687	165061887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027852, intron 1 of 7)	MER113|DNA|hAT-Charlie	6151.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	5.05379699788305	5.36414231141776	5.31654764280924	5.3001066242372	5.45209448585741	5.15823270859423	5.13415327491868	5.50436864237378	0.111519028502527	0.708162533953577	0.882710273980338
Merged-chr19-10689096-4	chr19	10689010	10689210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	CpG	375.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	6.81925161364694	7.27033634708169	6.71994268400947	6.4992447157821	6.64296929831897	7.01051448333645	6.54406578998918	6.81560140527341	-0.130146064032595	0.601654834389609	0.827140308199285
Merged-chr7-16932143-4	chr7	16932106	16932306	+	794.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8174.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	3.9664610028551	3.48913961587544	3.42873738741238	3.69229178614313	4.09206564865931	3.84501349602053	3.90483420399668	3.66917314917834	0.672755621782063	0.167840104637801	0.459771044027635
Merged-chr11-78697978-4	chr11	78697862	78698062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008702)	promoter-TSS (NM_008702)	-537.0	NM_008702	18099.0	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	7.58112283136172	7.8416899098003	6.90448522610715	7.05622612110998	7.27332331694732	7.17862610248738	6.99126021724508	7.3501371330446	-0.261187801039666	0.298812914945542	0.611078678185047
Merged-chr15-82805399-2	chr15	82805299	82805499	+	618.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11154.0	NM_029562	76279.0	Mm.439931	NM_029562	ENSMUSG00000022445	Cyp2d26	1300006E06Rik	cytochrome P450, family 2, subfamily d, polypeptide 26	protein-coding	2.81872820867353	2.67088966978897	2.61969266567352	2.61463349557233	2.86908423843047	2.86289454153907	2.97919006337132	2.81765481165478	0.963724509184793	0.117592275244716	0.379286775405276
Merged-chr18-37933694-4	chr18	37933627	37933827	+	801.612488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305981, intron 1 of 28)	intron (NM_001305981, intron 1 of 28)	1749.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	3.81134093998079	3.92370844539865	3.44697406026145	3.63592933695581	4.13369355603388	3.98614256569508	3.99123581507219	4.17705513951286	1.01218661673512	0.0244739500489662	0.146270362759296
Merged-chr5-34533213-4	chr5	34533110	34533310	+	851.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	7426.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	3.96298200591	3.92490244269888	3.96357730086887	3.60862620783805	3.95823318218308	3.76343597326896	4.07873210011019	3.86349851293756	0.184020245370527	0.684268589356097	0.870674900282045
Merged-chr1-182528720-4	chr1	182528611	182528811	+	908.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-11101.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	5.25437121061583	5.0837520030751	4.54022567289367	4.83556646396488	5.01658927382222	4.72204894996974	4.65463668209472	5.33080098443612	0.0212948014705359	0.954705384492028	0.983838959554429
Merged-chr15-93953744-4	chr15	93953644	93953844	+	916.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26633.0	NR_045737	77248.0	Mm.410768	NR_045737	ENSMUSG00000116360	9430014N10Rik	-	RIKEN cDNA 9430014N10 gene	ncRNA	4.25330844732571	4.29419658075562	4.25392917845143	4.93784322885021	4.80492209093174	4.10292843403476	4.61892291675076	4.77800563876775	0.25840745654253	0.565646406625268	0.807665909271413
Merged-chr3-95993645-2	chr3	95993545	95993745	+	896.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023320, intron 2 of 5)	intron (NM_023320, intron 2 of 5)	2194.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	3.8063383838727	3.11677889312127	3.39618724557563	3.28100583888888	3.24605540120006	3.13553564723429	3.14949683693134	3.28173799875958	-0.774484414132645	0.181168542781892	0.477671882256885
Merged-chr1-165763734-4	chr1	165763635	165763835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011804)	promoter-TSS (NM_011804)	-23.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	7.98598331437829	8.01342788112996	7.90243800522931	8.06478819393421	8.13445517414929	7.99679781624201	8.11481942930718	7.78228390867507	0.0279125319715337	0.867361700950869	0.950313421774078
Merged-chr2-33176645-2	chr2	33176545	33176745	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 7 of 16)	MIR3|SINE|MIR	-39316.0	NM_011923	26360.0	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	2.90322612346049	3.06941850415992	3.23225730272084	3.39552337356781	3.1673861895393	3.28410492639031	3.27636319328899	3.53869473918556	0.535290274116976	0.364323668733932	0.669235191019446
Merged-chr11-85925578-3	chr11	85925477	85925677	+	754.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28812.0	NM_172798	21387.0	Mm.275336	NM_011536	ENSMUSG00000000094	Tbx4	3930401C23	T-box 4	protein-coding	3.29445095627273	3.1243219598619	3.24052352550047	3.14214947123929	3.05631230378986	3.03593377927525	3.28149445565156	3.18206298657164	-0.221658016024902	0.688940621655384	0.87306125389561
Merged-chr5-136953160-4	chr5	136953074	136953274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163243)	promoter-TSS (NM_001163243)	-101.0	NM_001163243	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	7.69298744989865	7.82628068524852	7.31088012636051	7.18588212039749	7.41640744317791	7.64826588212065	7.42472342059688	7.13446166181042	-0.143305055228005	0.520307504785972	0.780730751415725
Merged-chr12-80463174-4	chr12	80463129	80463329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133798, exon 1 of 9)	5' UTR (NM_133798, exon 1 of 9)	134.0	NM_133798	97827.0	Mm.206631	NM_133798	ENSMUSG00000032705	Exd2	4930539P14Rik|C85658|Exdl2	exonuclease 3'-5' domain containing 2	protein-coding	4.78322763170062	4.92665713572262	5.22186323553328	4.85785147722287	4.7926507841631	5.1093144861629	4.98062815214322	5.1298969369949	0.100282760979266	0.759794876708497	0.905842932790046
Merged-chr10-40136188-4	chr10	40136082	40136282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	6072.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	6.71548963221159	6.95859819152988	6.62481253407819	6.75145412884065	6.4833902766508	6.75317942919316	6.76769569766062	6.79743112279913	-0.103623937449889	0.622728858413124	0.838650926399405
Merged-chr16-44746295-4	chr16	44746190	44746390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356392)	promoter-TSS (NM_001356392)	73.0	NM_001356392	66067.0	Mm.34520	NM_025332	ENSMUSG00000022668	Gtpbp8	0610037H22Rik	GTP-binding protein 8 (putative)	protein-coding	5.77331177453466	6.04678359477854	6.08386590654799	5.80884982114414	5.80619862176079	5.92489560191786	6.013402916045	5.71935861735344	-0.0972468461495418	0.700024871083292	0.879020750460333
Merged-chr16-96345327-4	chr16	96345177	96345377	+	938.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16480.0	NM_001177887	72058.0	Mm.119714	NM_028078	ENSMUSG00000000159	Igsf5	2010003D20Rik|JCAM|Jam4	immunoglobulin superfamily, member 5	protein-coding	3.9350072064694	4.03766442731084	4.10427996641818	4.5542685702751	4.37865640242786	4.92306505344	4.6337411618224	4.20356110948036	0.826388809930273	0.0699612858754483	0.283054303832691
Merged-chr12-87388466-4	chr12	87388371	87388571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011479)	promoter-TSS (NM_011479)	-116.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	9.09075230143558	9.25644846056555	9.00230876548945	9.03821901922479	9.14922196363111	9.39718502533103	9.04203953788785	8.93806740113531	0.0520741037465247	0.747426568530801	0.900560236507876
Merged-chr11-84597139-4	chr11	84597064	84597264	+	968.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71504.0	NR_038057	78365.0	Mm.260345	NR_038057	ENSMUSG00000087211	Lhx1os	1500016L03Rik|Lhx1as	LIM homeobox 1, opposite strand	ncRNA	3.78732176788256	4.13673524150023	3.95715810995496	3.83238044618088	4.45475267459073	4.3695028466474	3.9409686097906	4.39865591648607	0.968238466752251	0.0229826136057907	0.14032247845656
Merged-chr5-101909718-4	chr5	101909640	101909840	+	945.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 27 of 66)	intron (NM_172882, intron 27 of 66)	144610.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	4.81792683606583	4.8786208534288	5.02565543379307	4.60981850729971	4.26510781107375	4.40303497891635	5.33113283814715	5.25365939551688	0.12817288441573	0.767275716344125	0.908989684325729
Merged-chr14-105164928-4	chr14	105164839	105165039	+	953.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134077, intron 1 of 20)	MTEa|LTR|ERVL-MaLR	12388.0	NM_134077	74213.0	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	5.3534268863202	4.54689522600387	5.21304168386284	5.6055861302358	4.94631353387796	4.70178457566915	5.18700239896395	5.01602649688466	-0.513724612561683	0.17870425651471	0.474614254190511
Merged-chr16-35888383-4	chr16	35888284	35888484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17002.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	6.08280741773171	6.50470683941624	6.37075636362851	6.08985739069937	6.92947303988478	6.73368743845696	6.4924639138726	6.59975350216797	0.643433922888065	0.00614169903514145	0.0552248604879148
Merged-chr16-30689506-3	chr16	30689415	30689615	+	953.244446	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	89792.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	3.67888748051672	3.29395875674346	3.47353113250324	3.29953703874183	4.65530292701048	4.65079192477709	4.58851079125125	4.11304434826032	3.01439097035127	1.38930203901271e-10	1.04203508782809e-08
Merged-chr1-43811960-4	chr1	43811868	43812068	+	994.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026430, intron 1 of 14)	ORR1D2|LTR|ERVL-MaLR	15740.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	5.50357223306445	5.85164915429244	5.55750057672259	5.58851622247846	5.50644033775846	5.34396819730943	4.99279747188604	5.23068367956032	-0.596285397225999	0.0447574471902037	0.216117653724409
Merged-chr9-20888233-4	chr9	20888132	20888332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145610)	promoter-TSS (NM_145610)	57.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	7.7656064691814	7.77309585869274	7.25890725243413	7.43451288982484	7.66451883647339	7.74352927869542	7.8813512340846	7.94794516306804	0.312337050967372	0.109385736351128	0.365246860615328
Merged-chr13-23574892-4	chr13	23574791	23574991	+	889.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178204)	promoter-TSS (NM_178204)	510.0	NM_178188	319165.0	Mm.390553	NM_178188	ENSMUSG00000071478	Hist1h2ad	-	histone cluster 1, H2ad	protein-coding	4.71882750934939	4.64505632819072	4.41930072152839	4.4152004938504	5.03048280877463	4.50200719354014	4.73457385108639	5.21506138149592	0.74625103757992	0.0426620323859141	0.209888905866452
Merged-chr13-8985083-4	chr13	8984987	8985187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027000, intron 10 of 16)	intron (NM_027000, intron 10 of 16)	10925.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	5.59829024981853	5.52837696848282	5.35812701670425	5.64190429970159	6.12837765566077	5.6914538216732	5.86226440161805	6.01244484504624	0.651790125604801	0.0139186114023563	0.0996392276987147
Merged-chr9-44082775-4	chr9	44082692	44082892	+	775.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198092, intron 2 of 12)	RMER15|LTR|ERVL	-2128.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	3.90772623677597	3.75274704004757	3.52916525689657	3.79628354973103	4.06086995693896	3.64555616725481	3.74404618507131	4.0391618566088	0.390475827356172	0.405102255624166	0.702105565099527
Merged-chr18-36739991-4	chr18	36739889	36740089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028036, intron 9 of 11)	intron (NM_028036, intron 9 of 11)	4598.0	NM_010885	17991.0	Mm.29867	NM_010885	ENSMUSG00000014294	Ndufa2	AV000592|B8|C1-B8|CI-B8	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2	protein-coding	6.68511590862736	6.84529491258827	6.5757741800519	6.682032714602	6.78641837087539	6.84744832422318	6.60627580699876	6.81060323964287	0.090868191424477	0.652840549784371	0.854764223296605
Merged-chr7-140137653-4	chr7	140137539	140137739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199301)	promoter-TSS (NM_199301)	75.0	NM_199301	212508.0	Mm.296088	NM_199301	ENSMUSG00000039018	Mtg1	Gm169|Gtpbp7	mitochondrial ribosome-associated GTPase 1	protein-coding	7.53933738948642	7.32711505417011	7.60152222221936	7.53660850565534	7.4887230782766	7.52549399562892	7.51233508211707	7.27916589331677	-0.064955049803581	0.715250831072374	0.886053187059468
Merged-chr1-156454584-1	chr1	156454484	156454684	+	744.666687	f0_balb.idr	intron (NM_009230, intron 3 of 15)	intron (NM_009230, intron 3 of 15)	19744.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	3.387922682756	3.06612303069096	3.38843365053896	3.29472478524528	3.0817577325276	2.95359020224432	2.9785997403218	3.11389419624488	-1.01271837640706	0.0821785370705715	0.311236888908493
Merged-chr4-154964280-7	chr4	154964182	154964382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172990, intron 1 of 18)	CpG	159.0	NR_131230	269614.0	Mm.30042	NM_172990	ENSMUSG00000029056	Pank4	D030031I12Rik|R75150	pantothenate kinase 4	protein-coding	5.26402768883546	5.05007431011668	5.67864558941319	4.81137431657333	5.08720095757622	5.49850357553453	5.04200330072934	5.48493932406258	0.116898899053414	0.741111285570018	0.898139463026673
Merged-chr7-141549652-4	chr7	141549558	141549758	+	877.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9801.0	NM_001142681	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	4.77997182380398	4.98002838412489	4.92402549514643	4.90168831254824	4.4365639648596	4.83737867029626	4.90014442306226	4.81491153287818	-0.315000326132664	0.357553411768428	0.663673319804563
Merged-chr8-103970666-3	chr8	103970566	103970766	+	930.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-130959.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	3.87499837968054	4.02990107990327	4.21782079092821	3.93695404061701	3.71246689374704	3.78155960459549	3.75807426384204	3.33608105526281	-1.05319920672912	0.0308253678755343	0.170311174416879
Merged-chr7-35802938-4	chr7	35802828	35803028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177739)	promoter-TSS (NM_177739)	61.0	NM_177739	668501.0	Mm.286296	NM_177739	ENSMUSG00000044452	Zfp507	1810022O10Rik|A230056M16Rik|AL024009|AU021817|BB105092|Gm480|Znf507|mKIAA1084	zinc finger protein 507	protein-coding	5.33574388076871	5.29353625071774	5.55397314431083	5.10818283806972	5.26695008302843	5.48089038356849	5.08547300554578	5.499185716084	0.0406531258559789	0.893266171664459	0.960089656965393
Merged-chr19-47531387-3	chr19	47531274	47531474	+	991.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175360, intron 2 of 9)	intron (NM_175360, intron 2 of 9)	5745.0	NM_175360	108689.0	Mm.218048	NM_175360	ENSMUSG00000042694	Stn1	0610009H20Rik|2310057J23Rik|AAF-44|AAF44|AI413458|Obfc1|RPA-32	STN1, CST complex subunit	protein-coding	4.5393941670504	4.85292155687991	4.95515485521242	4.93526058996602	4.10151321047342	4.23581593153015	4.47779859993283	4.16074222765084	-1.35757167279521	0.000437305169430661	0.00691999725588126
Merged-chr16-44029452-4	chr16	44029361	44029561	+	912.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359085, intron 4 of 16)	intron (NM_001359085, intron 4 of 16)	-1516.0	NM_001172107	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	3.89388152092177	4.19825837653041	4.33268785011509	4.70086069038635	4.88001664513042	4.41430216137933	4.80607493788083	4.58358049366509	0.779948342724379	0.0756597110322434	0.297149186891159
Merged-chr11-105363065-4	chr11	105362959	105363159	+	973.1416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172568, intron 11 of 11)	CpG	70413.0	NM_008626	17534.0	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	5.36501048106853	5.61947722715064	4.74278413955599	5.24353171738728	5.63367105189083	5.48131925379989	4.93508244699202	5.59981495739345	0.288545353702094	0.412059099451184	0.707291276160794
Merged-chr1-37562152-4	chr1	37562043	37562243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21127.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	6.33383856202907	6.35681454579387	6.35245214540618	6.30347776296718	5.94597802312764	6.05045366474536	6.19270211242693	6.20072862950293	-0.366053926616808	0.104288161279501	0.355088592763147
Merged-chr9-46012724-4	chr9	46012600	46012800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027498)	promoter-TSS (NM_027498)	-10.0	NM_001357241	18475.0	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	2610005M20Rik|AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	7.5234678128032	7.47215594453242	7.18861002857891	7.04688450064306	7.47822977139349	7.71055345905356	7.46061551418031	7.43650665289689	0.282347796336357	0.156296114126693	0.442152581670994
Merged-chr4-149793371-4	chr4	149793263	149793463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19096.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	5.39434949773439	5.5722277967472	5.30567965680872	5.3369614622033	5.37864278830066	5.38536813778125	5.42438704342143	5.33256512713439	-0.0409339674556668	0.882805102337176	0.955814918609989
Merged-chr10-21994618-4	chr10	21994498	21994698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011361)	promoter-TSS (NM_011361)	-68.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	8.19354720032134	8.31165885216124	8.29664864915317	7.92385059104503	7.9401499474524	8.11863411510363	8.07730180423225	7.96421542710585	-0.203052459703639	0.239337729280198	0.549703033561985
Merged-chr2-29406135-4	chr2	29406039	29406239	+	799.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290490, intron 3 of 5)	RMER4A|LTR|ERVK	27625.0	NM_001290490	68975.0	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding	3.50298166558881	3.74915085194047	3.67180842600047	3.73206101222109	3.77881460857121	3.67792777463081	3.49101606830098	3.86424585100524	0.12125856080659	0.798628525775478	0.922163759219727
Merged-chr10-121034031-4	chr10	121033942	121034142	+	966.770874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011915)	promoter-TSS (NM_011915)	38.0	NM_011915	24117.0	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding	5.03089686114593	4.80177764062403	5.03175905028341	4.78670326877827	4.60142788289318	4.4411007284091	4.73695562306535	4.82996819484254	-0.518294862756652	0.134145267814689	0.407804135038086
Merged-chr4-43964704-4	chr4	43964613	43964813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	7011.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	7.06058161013323	7.24442925256081	7.43528831597131	6.9027851700598	7.41715442428112	7.34595776277473	7.12160619434125	7.18658282521122	0.152140843532648	0.462242411878968	0.743799087490292
Merged-chr13-37779530-4	chr13	37779451	37779651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46487.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.95364786116427	5.89357808849807	6.0571403798387	6.06871223431847	5.82618780388315	5.37134234044998	5.78998241655492	5.66422928767154	-0.507929154932448	0.0503703447682039	0.232872874139775
Merged-chr10-60283721-4	chr10	60283634	60283834	+	874.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146124)	promoter-TSS (NM_001146124)	-727.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	4.18146491195081	3.69740345369763	4.22513897309329	4.42102552473958	3.89248185588193	3.8332225892562	4.20584016415536	4.22244022652987	-0.30676897624321	0.511441463242519	0.775408790835377
Merged-chr8-11001350-4	chr8	11001238	11001438	+	932.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081212, intron 1 of 1)	intron (NM_001081212, intron 1 of 1)	-6512.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	4.84980053958221	4.69777881053702	4.85060562174559	4.97395550139695	4.7067987385248	4.62387353029554	4.68170708526823	4.62023029770905	-0.408123935059331	0.225542299892408	0.533990000134436
Merged-chr7-117486661-4	chr7	117486571	117486771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175645, intron 2 of 11)	intron (NM_175645, intron 2 of 11)	105692.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	6.12937667630303	6.33057159317391	6.20775386781187	6.28596046572121	6.24055878163154	5.68038544114987	5.6235934862414	6.04377639333906	-0.473447420059443	0.0727457045423939	0.290150511327058
Merged-chr17-62883027-1	chr17	62882927	62883127	+	621.0	f0_balb.idr	Intergenic	Intergenic	-1710.0	NM_010109	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	3.5746358745752	3.38963780128198	3.97222626965053	3.35627964222911	3.36116188062486	3.11269820916051	3.61025356675684	3.40763014574246	-0.685485087788742	0.226582093092846	0.53520075526854
Merged-chr5-103752955-4	chr5	103752870	103753070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie1a|DNA|hAT-Charlie	-1192.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	7.42316492420818	7.7948413795507	7.22081925243529	6.55965221855777	7.68392608594802	7.61099939056395	7.00734962333499	6.6196802396168	-0.0323540287371684	0.944722232144277	0.980135813539954
Merged-chr8-113643660-4	chr8	113643568	113643768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173015, exon 5 of 5)	3' UTR (NM_173015, exon 5 of 5)	455.0	NM_001048145	668110.0	Mm.390078	NM_029139	ENSMUSG00000033409	Syce1l	4930481F22Rik|MMRP|PSESS|mmrp2	synaptonemal complex central element protein 1 like	protein-coding	5.96852046376628	6.18531051448513	6.19518519733719	5.5508942806024	6.10738580601662	6.27259719683318	6.21814889698372	5.77178967525106	0.189456093740715	0.498994833851458	0.768056044938103
Merged-chr4-32531636-3	chr4	32531541	32531741	+	939.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 2 of 4)	intron (NM_001109661, intron 2 of 4)	40021.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	4.7751149280283	4.52059188473114	5.18157165456048	6.09241068332974	3.96896739539989	4.06347261233542	5.154578061233	4.7726344479696	-1.31684809000985	0.140350603040163	0.416545702113821
Merged-chr2-14056177-4	chr2	14056080	14056280	+	915.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013935)	promoter-TSS (NM_013935)	-145.0	NM_013935	30963.0	Mm.241205	NM_013935	ENSMUSG00000063275	Hacd1	Ptpla	3-hydroxyacyl-CoA dehydratase 1	protein-coding	4.73316648808557	4.55269692114769	4.69948283160275	4.56989872751031	4.24426799500774	4.36913075502618	4.40739421651696	4.28766836166382	-0.719248910973306	0.0506054586445805	0.233296839112781
Merged-chr13-62294555-3	chr13	62294462	62294662	+	879.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	88612.0	NM_001162910	100041979.0	Mm.445930	NM_001162910	ENSMUSG00000094942	Gm3604	-	predicted gene 3604	protein-coding	5.01794567422719	4.73884824788852	4.2813469172302	4.58695332724826	3.02857855356402	3.33159127783086	3.27716598618564	3.28613147878401	-7.45989415846264	5.59810757990633e-12	5.32710828115178e-10
Merged-chr17-66107071-4	chr17	66106992	66107192	+	897.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4454.0	NM_026833	68767.0	Mm.296545	NM_026833	ENSMUSG00000024101	Washc1	1110049F14Rik|ORF19|Wash|Wash1	WASH complex subunit 1	protein-coding	4.29249120449028	4.22825474516098	4.33563001136386	4.23669510597229	4.42875251905792	4.23177795048749	4.09087404258736	4.24656108027802	-0.0142396498935973	0.97089942509058	0.989542228851376
Merged-chr6-125082004-4	chr6	125081891	125082091	+	820.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163269, exon 2 of 2)	exon (NM_001163269, exon 2 of 2)	10714.0	NM_001163268	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	4.19439381113741	3.93869414653768	3.799742655642	3.75546036599811	3.97173302419337	4.18546298640247	4.17579251460977	4.27457365951069	0.611475362084149	0.155195499192279	0.440817750658429
Merged-chr10-22747156-4	chr10	22747052	22747252	+	913.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15705.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	4.88298459360816	5.25028083782355	5.18077388333024	5.62828458075779	4.35290308001809	4.58222090353056	4.74484735798207	4.95264941468723	-1.21902612002855	0.00106955284542073	0.0142006532333897
Merged-chr16-20000419-2	chr16	20000319	20000519	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-17370.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	3.35706929611807	3.34593644550707	3.35756984206621	2.93736620271249	2.98549296099943	2.9961988358377	3.01296001735909	2.95663574563225	-1.10964264434936	0.0688868448247836	0.280508966120325
Merged-chr10-13193001-7	chr10	13192887	13193087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181470, intron 1 of 10)	CpG	150.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	6.74995024298376	7.16753139596001	7.11968764569365	6.1936612354189	6.91973377330975	7.15637717457779	6.76007127933642	6.68584600834928	0.0543177471772007	0.842353720339837	0.940176660530117
Merged-chr8-4800811-1	chr8	4800711	4800911	+	940.0	f1_balb.idr	Intergenic	Intergenic	-21244.0	NM_011369	20419.0	Mm.37801	NM_011369	ENSMUSG00000022322	Shcbp1	mPAL	Shc SH2-domain binding protein 1	protein-coding	2.78891712693698	2.69771486241576	2.84863800626288	2.68791634438046	2.74359855741877	2.69586591982729	2.65345482501263	2.8471211977674	-0.0719818180178518	0.909017912814894	0.966163239950594
Merged-chr4-152009778-4	chr4	152009733	152009933	+	993.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033352, exon 1 of 4)	exon (NM_001033352, exon 1 of 4)	942.0	NM_001033352	242785.0	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	4.16861124132984	4.12880683191166	4.61457827497316	4.2093906948941	4.25674713779543	4.34361680060904	4.19847779308499	4.34706121963861	-0.00298839080784129	0.994030208982259	0.997739983081298
Merged-chr7-122219529-4	chr7	122219377	122219577	+	904.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027363)	promoter-TSS (NM_027363)	-19.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	4.13612401194276	4.12832625451768	4.46538712817203	4.52609670672827	3.9329696174665	4.2139116961401	3.80587715511981	4.03701558341468	-0.865209277323339	0.0453476218880937	0.21802082933959
Merged-chr5-30888058-4	chr5	30887967	30888167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_122117)	promoter-TSS (NR_122117)	-785.0	NM_174849	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	6.88044480285393	7.06962752555528	6.68165225797876	6.77666018079696	6.85262752901608	7.04464276950418	6.252922140894	6.95354816601279	-0.0696641475598757	0.772257092133215	0.910810383351782
Merged-chr5-138195700-4	chr5	138195600	138195800	+	976.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177878)	TTS (NM_177878)	1386.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	5.29807616551491	5.31969926369235	5.29898853742638	5.08064978710591	5.0499396346802	4.94855435525754	5.3010238960048	5.20529925947526	-0.204875582034778	0.500001378168257	0.768624022128985
Merged-chr1-127271361-4	chr1	127271266	127271466	+	967.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 2 of 17)	intron (NM_145128, intron 2 of 17)	66380.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	5.18040908773991	5.22701273986378	5.35579329239873	5.36490670638883	4.75961808686435	5.00249336602343	5.18631128171934	4.97547057892058	-0.589701598543207	0.0570899919061957	0.250391800720383
Merged-chr3-79910923-4	chr3	79910807	79911007	+	849.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133187, intron 2 of 3)	intron (NM_133187, intron 2 of 3)	24977.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	3.946056629158	3.84016936296531	4.17752231648141	4.56312060501851	3.8507177427884	3.84664326392566	3.9793104101263	3.89281247211157	-0.777646484816934	0.0984624354650461	0.343994301133918
Merged-chr12-26451399-3	chr12	26451310	26451510	+	669.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021384, intron 2 of 5)	intron (NM_021384, intron 2 of 5)	5042.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	3.37070858206296	3.52912706926405	3.53659071141303	3.02740176922127	3.58263936861644	3.6542972741026	3.41516444515281	3.24648847658641	0.382932521340405	0.488244488477097	0.76118893988362
Merged-chr10-53616110-4	chr10	53616032	53616232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027830, intron 5 of 13)	intron (NM_027830, intron 5 of 13)	14307.0	NM_027830	71567.0	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	6.18545675948605	6.40198797805226	6.03728660628452	6.46884761632778	6.40324218079896	6.21451666747321	6.2511999108086	6.24104368621524	-0.023774415578731	0.91932598182444	0.970285021467879
Merged-chr3-54681777-4	chr3	54681659	54681859	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-11056.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	5.18503917992262	5.19680308609349	5.33934346952721	5.36187435201907	5.24382350843544	5.39210364910621	5.34113376178562	5.11550939555772	-0.0105552430011563	0.970874578013249	0.989540146809868
Merged-chr11-94704116-4	chr11	94704011	94704211	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001007584, exon 1 of 2)	exon (NM_001007584, exon 1 of 2)	388.0	NM_001007584	432589.0	Mm.342314	NM_001007584	ENSMUSG00000056008	Gm11541	-	predicted gene 11541	protein-coding	5.12726356662461	4.68157040415041	4.86277008654171	4.60283769409877	4.9894330458819	4.7991224630778	4.94472439160678	5.23864865352596	0.372392799842015	0.278136961238638	0.590283275112705
Merged-chr19-34551124-2	chr19	34551024	34551224	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355262)	promoter-TSS (NM_001355262)	36.0	NM_001355262	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	3.92058870157276	3.8509165863592	3.92117155433089	3.49117288698113	3.80897598742061	4.23108067464213	3.90431134152409	4.05906421642994	0.596189309915327	0.197893191208364	0.499232303987954
Merged-chr5-32785713-4	chr5	32785608	32785808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177298)	promoter-TSS (NM_177298)	-82.0	NM_177298	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	7.39563511496707	7.38745583151606	6.64580737147263	7.15746314647966	7.29006841269703	7.60199584421798	7.36012892053633	7.12599394252503	0.232173402418946	0.311912314281358	0.623800122391555
Merged-chr8-120634566-4	chr8	120634422	120634622	+	921.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197988)	promoter-TSS (NM_197988)	-140.0	NM_197988	68918.0	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	4.39807843623739	4.4452849867738	4.62242244315484	4.31794409939408	4.09235007138465	4.03218109873677	4.05896656984699	4.39593991173816	-0.715696141622981	0.0759117364217468	0.297703663182563
Merged-chr12-84752235-4	chr12	84752154	84752354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20858.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	7.25026030112149	7.08645721739593	7.15272438091747	7.37789782272906	7.07330558305942	7.15890690050607	6.92009829201636	7.22516955058793	-0.180801925808042	0.346857106030957	0.654983043837928
Merged-chr6-134263075-4	chr6	134262957	134263157	+	886.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007961, exon 7 of 8)	exon (NM_007961, exon 7 of 8)	-133272.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	4.48792229981681	4.72773921518322	4.83026834358465	4.83350963233507	4.39427796653985	4.96624066336166	4.12615950894865	4.34849755135275	-0.525031098345426	0.19346958240692	0.493690248402503
Merged-chr17-56754781-4	chr17	56754700	56754900	+	795.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008738, intron 1 of 2)	intron (NM_008738, intron 1 of 2)	2748.0	NM_008738	18188.0	Mm.8074	NM_008738	ENSMUSG00000039481	Nrtn	NTN	neurturin	protein-coding	3.60541858762493	3.66968683306232	3.82097811864887	3.67466995060845	3.36290850105097	3.94275796990494	4.10757752496367	3.81868016116177	0.401922475023665	0.42171251536279	0.714131161968168
Merged-chr2-163575499-4	chr2	163575346	163575546	+	953.2976070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26868.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	4.75966014131724	5.00949869884425	5.0927020317195	5.04971379735937	4.70365211351894	4.68808334170213	4.2935308115046	4.67903987024488	-0.797741793108172	0.0232502602824216	0.141303085023574
Merged-chr5-141241370-4	chr5	141241258	141241458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177879)	promoter-TSS (NM_177879)	-176.0	NM_177879	330222.0	Mm.151931	NM_177879	ENSMUSG00000039683	Sdk1	5330440E10|6720466O15Rik	sidekick cell adhesion molecule 1	protein-coding	5.39669250877271	5.61948605134736	5.7443342739767	5.76134896665845	5.53817949792679	5.47908759992709	5.66809430755612	5.53832336356211	-0.155189326579507	0.564605783089603	0.806843643408517
Merged-chr11-60728409-4	chr11	60728313	60728513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039559)	promoter-TSS (NR_039559)	15.0	NM_001009927	237781.0	Mm.339760	NM_001009927	ENSMUSG00000018599	Mief2	AI482195|Gm11|Smcr7	mitochondrial elongation factor 2	protein-coding	6.78147838075105	7.05258968264164	7.13085231372587	6.8536368820109	7.10632244934183	7.38332502166059	6.91426259524653	6.76291383962441	0.143440862601753	0.512599459570756	0.77591327696453
Merged-chr15-95789723-4	chr15	95789611	95789811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1132.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	5.98280438861079	6.36990673596827	6.19941471547595	6.35435546083984	6.45659168450817	6.03970176974009	6.29862311503298	6.34420601568914	0.0836735379490343	0.725903982260115	0.890939054959008
Merged-chr2-132598295-4	chr2	132598203	132598403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033469, exon 1 of 4)	non-coding (NR_033469, exon 1 of 4)	107.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	6.39309048768558	6.47220778204051	6.4298011163645	6.80765594559524	6.66012089839001	5.99188745484439	6.74504501450517	6.42520225318198	-0.0797357285642242	0.75595525056599	0.904080158274722
Merged-chr18-80704018-2	chr18	80703920	80704120	+	793.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	4153.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	3.05185598726849	2.83569348436729	2.93345181869481	2.85284363452497	2.72790797258593	3.22051058736149	2.72476438783725	3.05055838643801	0.112079097994013	0.858971604740249	0.946576014812915
Merged-chr16-31188241-4	chr16	31188134	31188334	+	832.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030138, intron 1 of 22)	MER45A|DNA|hAT-Tip100	13004.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	3.60206723943363	3.77313308202963	3.3612561811629	3.64553266773544	3.88123942452865	3.66240885426243	3.47496617911799	3.89426216129556	0.413406755771768	0.40343275375139	0.700850315555859
Merged-chr8-86623998-4	chr8	86623879	86624079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025827)	promoter-TSS (NM_025827)	-64.0	NM_025827	66887.0	Mm.324550	NM_025827	ENSMUSG00000047866	Lonp2	1300002A08Rik|AU015403|Lonp	lon peptidase 2, peroxisomal	protein-coding	8.60152962829908	8.47636315995075	8.62591191667468	8.63849577505781	8.61180283259061	8.82195436243621	9.05525729665408	8.67396260511686	0.265353707886809	0.105300762448011	0.357099908770156
Merged-chr9-108201320-4	chr9	108201216	108201416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10933.0	NM_007567	12217.0	Mm.20425	NM_007567	ENSMUSG00000032589	Bsn	-	bassoon	protein-coding	7.99421175585504	8.35805570334047	7.66932692480492	7.83460186718213	8.03143218282299	8.20686530622534	8.12299623169899	8.06317568079222	0.149476941862197	0.443299662598529	0.729879993711436
Merged-chr9-64960849-4	chr9	64960750	64960950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175153)	promoter-TSS (NM_175153)	18.0	NM_001077631	69882.0	Mm.272616	NM_175153	ENSMUSG00000034263	Ints14	2010321M09Rik|Vwa9	integrator complex subunit 14	protein-coding	6.34692486021754	6.61892284959194	6.16316533261012	6.21086684639789	6.84466899626254	6.88692011717095	6.87450725863356	6.66268296198373	0.690872111754657	0.0016553193767015	0.020189166880438
Merged-chr17-34153082-4	chr17	34152959	34153159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010387)	promoter-TSS (NM_010387)	-132.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	6.11620700761604	6.29297663739561	5.88162065515575	4.87837027135942	7.1180538013392	6.87170952772159	6.64740959334052	6.29326694838227	1.30398005494704	0.00019179988513578	0.00351134877162544
Merged-chr14-70647312-2	chr14	70647214	70647414	+	774.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_181345)	TTS (NM_181345)	-5046.0	NM_008004	14171.0	Mm.12814	NM_008004	ENSMUSG00000022101	Fgf17	-	fibroblast growth factor 17	protein-coding	3.32766416898337	3.3889200948899	3.43435501237267	3.36897487474267	3.10255295849602	3.26075125836972	3.31518485062755	3.08380369825852	-0.714120233983208	0.186218368481526	0.484113766444254
Merged-chr17-5276084-4	chr17	5275984	5276184	+	898.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 6 of 19)	intron (NM_001085355, intron 6 of 19)	142683.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	4.68561476674648	4.44815904830525	4.95851965902731	4.94335138199481	4.67600664998462	4.46944037852958	4.50420954410198	4.52173828266141	-0.499173105000654	0.174648292070043	0.469069910997419
Merged-chr14-54383943-1	chr14	54383843	54384043	+	841.0	f0_balb.idr	intron (NM_011405, intron 4 of 11)	B4A|SINE|B4	23102.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	4.3280532971675	4.03209172736125	4.08948351265375	4.13349157495285	3.8361785621058	3.96990630452497	3.66522901407316	3.48354226542615	-1.1155106448709	0.0170669824094225	0.114897848873525
Merged-chr17-26576990-4	chr17	26576896	26577096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	MIRc|SINE|MIR	15484.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	5.69194675240395	5.37907529308196	5.71747102313211	5.64459526120069	5.89020411771906	5.49999549318872	5.68848307480311	5.61239977838613	0.131969635057623	0.626991772093651	0.840944250204607
Merged-chr4-41314353-4	chr4	41314294	41314494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026893, intron 1 of 8)	CpG	507.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	5.95755311703712	6.21106449194197	6.52084377633846	6.01620120158391	5.94722355149093	5.96148957197653	6.45698728505938	6.438355576585	0.0495373274103664	0.854526156068531	0.945206126144247
Merged-chr10-83198574-4	chr10	83198462	83198662	+	827.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	139255.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	4.51641746900618	3.93433630426432	4.14136645048674	4.12934751226293	4.47385115398788	4.26718685185821	4.17082174323002	4.27668694055496	0.290427895728952	0.48132979853356	0.756510503784291
Merged-chr4-129625299-5	chr4	129625257	129625457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001199695)	TTS (NM_001199695)	-1449.0	NM_025455	66264.0	Mm.383215	NM_025455	ENSMUSG00000028795	Ccdc28b	1110002E08Rik|1810010N17Rik	coiled coil domain containing 28B	protein-coding	4.75433326320671	5.20419398318405	5.05922154014534	4.69360104711009	5.2475074443856	5.44801632445745	5.03452032969975	5.2145873247444	0.588825024848759	0.0721398051353354	0.288571808379493
Merged-chr6-134947604-4	chr6	134947519	134947719	+	896.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037956, intron 1 of 1)	intron (NR_037956, intron 1 of 1)	18527.0	NR_037955	381822.0	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	3.96344323135653	3.85594378085734	3.8016839665669	3.92638908223327	4.47858949905524	4.18679677752896	3.78715396066483	4.31483674168475	0.869346710919111	0.0491461541783558	0.229193088400785
Merged-chr2-27732999-3	chr2	27732899	27733099	+	891.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	22416.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	4.10078796123095	3.71360784142431	3.85887519257379	3.55241000705166	4.36510720205614	4.08524533258363	4.03832914946261	3.95904058666737	0.882045387636911	0.0526277241190505	0.239100579247456
Merged-chr11-111954947-1	chr11	111954847	111955047	+	663.0	f0_balb.idr	Intergenic	Intergenic	756409.0	NR_024085	217294.0	Mm.297761	NM_146031	ENSMUSG00000041674	BC006965	-	cDNA sequence BC006965	ncRNA	2.52158420704738	2.60257481418271	2.4025195811887	2.58995410717797	1.96061192480637	2.06075406325578	2.0416211785401	2.04474556207344	-5.44872419427264	4.71251305695831e-06	0.000140583389304793
Merged-chr7-127557898-4	chr7	127557790	127557990	+	868.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304266, intron 33 of 33)	intron (NM_001304266, intron 33 of 33)	-3333.0	NM_001304267	105180375.0	Mm.428042	NM_001304267	ENSMUSG00000106715	Tmem265	-	transmembrane protein 265	protein-coding	4.17187044274042	4.17043761600867	4.22014795391747	4.41845598789307	4.28218593582587	3.90292673294424	4.75411101919577	4.39205643964211	0.264181220180858	0.540167912399605	0.792575123924295
Merged-chr2-102831688-4	chr2	102831570	102831770	+	881.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 9 of 13)	intron (NM_001039150, intron 9 of 13)	69995.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.3185199938777	3.57957907972778	4.0444630299348	4.14057061832527	4.31928875233489	4.00574623432968	4.33922012382164	4.57568587324163	0.685921064876629	0.135848348961588	0.410243322164528
Merged-chr3-81996163-4	chr3	81996044	81996244	+	923.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021370)	promoter-TSS (NM_021370)	-778.0	NM_021370	58170.0	Mm.88839	NM_021370	ENSMUSG00000028008	Asic5	Accn5|Blinac|Inac	acid-sensing (proton-gated) ion channel family member 5	protein-coding	4.75178552040835	4.44264261163594	4.64349379048527	4.94384200143662	4.63757752507722	4.42527299453041	4.41817011343961	4.34279806600887	-0.556595185611342	0.140273917416059	0.416387554433365
Merged-chr11-19018212-4	chr11	19018130	19018330	+	919.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001193271, exon 1 of 13)	exon (NM_001193271, exon 1 of 13)	739.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	4.57555582379011	4.67364165515194	4.83189318131836	5.02347372439177	4.59049882352259	4.33208886984835	4.42901416423838	4.30483743842803	-0.821998583958604	0.0286611122800143	0.162587131069853
Merged-chr19-7495522-4	chr19	7495421	7495621	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146091, intron 1 of 12)	intron (NM_146091, intron 1 of 12)	1083.0	NM_146091	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	4.52701855372763	4.52313846092381	4.17556182025729	3.92177855016664	4.47604959253393	4.53700510614181	4.58026766408812	4.27035873667141	0.407071678784069	0.324509659493458	0.63610577916625
Merged-chr10-38623639-2	chr10	38623539	38623739	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	198140.0	NM_001177783	215919.0	Mm.294313	NM_001177783	ENSMUSG00000094311	Rfpl4b	100040915|Gm3037|Gm62	ret finger protein-like 4B	protein-coding	3.70718681407415	3.3671046304238	4.05584666165813	3.31331321459577	3.46600506275051	3.34601507965458	3.58866490406452	3.84731041992574	-0.201653968674093	0.7169283123298	0.886834665867069
Merged-chr2-148535758-4	chr2	148535664	148535864	+	815.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92229.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	3.46502686409345	3.57518498516312	3.59447248519933	3.53142941036317	3.94403828163375	4.34866551786306	4.08138007342517	4.05560290818644	1.62138530045812	0.000352487184345653	0.00578369877698
Merged-chr1-64797423-4	chr1	64797316	64797516	+	935.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 7 of 7)	intron (NM_001039493, intron 7 of 7)	-59666.0	NM_022721	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	5.10514238951438	4.98407050717509	5.07437534925318	5.37445916415703	4.73638401299678	4.88348392009456	4.76588483008139	4.93594468041707	-0.654907807991414	0.0443672846820542	0.214787387362031
Merged-chr6-121230073-4	chr6	121229971	121230171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD|LINE|L1	-15835.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	5.7827488204495	5.39424517477808	5.9191831455716	5.7427149692996	5.63097746605367	5.80790527438545	5.63003654444113	6.01747656000815	0.0912251323859997	0.739960190308809	0.89766551429919
Merged-chr11-116842905-4	chr11	116842683	116842883	+	995.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028865)	promoter-TSS (NM_028865)	666.0	NM_033398	107817.0	Mm.481684	NM_033398	ENSMUSG00000056962	Jmjd6	5730436I23Rik|D11Ertd195e|PSR|PtdSerR|Ptdsr|mKIAA0585	jumonji domain containing 6	protein-coding	4.6167013991128	4.10764381735743	4.7910631472466	4.2544334515669	4.58025698903022	4.40717767892347	4.30675966420749	4.65103708320934	0.0880047298855072	0.828601270232548	0.934199261424475
Merged-chr3-20304956-4	chr3	20304856	20305056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29223.0	NM_029706	76703.0	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	7.56705154487957	7.29539112195797	7.87302943148244	7.70601164314964	7.25451289442491	7.19111386781838	7.4232814896557	6.99425867130457	-0.536886500559369	0.00918883410224548	0.0742818878550518
Merged-chr14-57746716-4	chr14	57746619	57746819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015771)	promoter-TSS (NM_015771)	-596.0	NM_015771	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	5.89462914925668	5.45948837368144	5.87297259243555	5.94125846198728	5.90614690989758	5.65180431599359	5.97264559104384	6.05945459449917	0.155123946765123	0.561059441243892	0.804849597634179
Merged-chr1-37322996-3	chr1	37322874	37323074	+	675.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	MIRc|SINE|MIR	23136.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	3.23376775628516	3.31128139610709	3.39883876288031	3.43665105173494	2.82519542268507	3.01248431929936	3.22204775142733	3.44719995254841	-0.782069715956018	0.195264823144635	0.496044870624791
Merged-chr8-72570968-5	chr8	72570901	72571101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172396)	promoter-TSS (NM_172396)	47.0	NM_172396	66818.0	Mm.22565	NM_172396	ENSMUSG00000044600	Smim7	9130011J15Rik	small integral membrane protein 7	protein-coding	7.10783597011043	7.3200234816879	7.71474670403415	7.08811980313996	7.0918256791612	7.27442437569947	7.25374054705846	7.5239768802396	-0.0460306072185115	0.834947917039578	0.937157149409614
Merged-chr11-60912592-4	chr11	60912505	60912705	+	709.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025294, intron 1 of 2)	intron (NM_025294, intron 1 of 2)	1187.0	NM_025294	24083.0	Mm.22780	NM_025294	ENSMUSG00000018931	Natd1	AI256713|F3-2|Gm16515|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding	3.51237876539584	2.99560663586689	3.56547752440497	3.49768755132461	3.44583966284186	3.62982835759351	3.32895372748589	3.7090206575496	0.402820716377305	0.469625061355881	0.748495910704808
Merged-chr2-148575670-4	chr2	148575574	148575774	+	773.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96941.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	4.02832802526538	4.11962035319164	4.02894634564158	3.65971419716448	3.97562622775754	4.05708772409977	3.64990968462099	3.83045180388925	-0.197119184483158	0.671908049010864	0.864972533221387
Merged-chr8-84270469-4	chr8	84270353	84270553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001294281)	promoter-TSS (NM_001294281)	-51.0	NM_026350	67736.0	Mm.30095	NM_026350	ENSMUSG00000004994	Ccdc130	4930527D15Rik|C77430	coiled-coil domain containing 130	protein-coding	8.93050460258824	9.09255224413804	8.65620443784848	9.01261866138317	8.89931149424543	9.08381274995343	8.90299110384947	8.81440339358425	-0.0110177677354595	0.945616358551455	0.980594795823631
Merged-chr1-177470317-4	chr1	177470189	177470389	+	980.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24468.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	4.46754413492611	5.15629639476296	4.8645825922237	4.6098055308135	5.25601803864331	5.11340588687718	5.28254703423057	5.10298543288092	0.773635964664838	0.0230607573417562	0.140606616997504
Merged-chr7-135699450-4	chr7	135699362	135699562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081117, exon 12 of 14)	exon (NM_001081117, exon 12 of 14)	16917.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	6.2279926479917	6.65201612671169	6.49204130043278	5.07542819261049	6.7996673422756	6.58668962119285	6.36020652205908	5.643725426772	0.23785174034651	0.68456227229205	0.870830646235761
Merged-chr8-105471490-4	chr8	105471418	105471618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026481)	promoter-TSS (NM_026481)	-96.0	NM_026481	67971.0	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	8.00931026740386	8.23144820509644	8.39465996439528	8.40497373066848	8.23050509732667	8.26986561621553	8.5418904830676	8.18789306168886	0.0504440876007985	0.7742338819171	0.911768711917431
Merged-chr4-125066109-2	chr4	125066009	125066209	+	850.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175223)	promoter-TSS (NM_175223)	-452.0	NM_175223	75563.0	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	2.29522872316251	2.38728870418257	2.59019123874244	2.33519330876402	2.83545011522468	2.88540070952827	2.64488504612026	2.65345648680442	1.89755135305687	0.00628624656196113	0.0561564663744157
Merged-chr5-101766476-4	chr5	101766370	101766570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173370, intron 1 of 12)	intron (NM_173370, intron 1 of 12)	1340.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	6.13741725539607	5.75345605274174	6.17601482305833	6.06236349380353	5.83079403397457	5.72027470396872	6.04889699351111	5.76004251565941	-0.306955956001648	0.228576064997638	0.537436518695435
Merged-chr6-33484773-4	chr6	33484657	33484857	+	922.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	235629.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	4.34392568350615	4.7090250285993	4.25192377056729	4.44997416911255	4.55359756135289	4.27814492558481	4.41094733392195	4.34191172980485	-0.107193421100463	0.780631380336365	0.914612869057185
Merged-chr19-47447036-4	chr19	47446946	47447146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	17365.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	5.88662749558864	6.01425147202519	6.20031463829664	6.10585977935504	5.50749915872098	5.26526053829177	5.58785274841774	5.58445263556059	-0.928980502482739	0.00038537899204141	0.00623894378545623
Merged-chr10-20663171-4	chr10	20663095	20663295	+	941.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	61883.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	4.40291035526552	4.02137242618888	4.14139691498942	4.69193263855093	4.23180936637806	3.8710243319074	4.45884242145567	4.08959868543846	-0.418981373176577	0.356212517379991	0.662704502355483
Merged-chr1-58795511-4	chr1	58795465	58795665	+	982.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009812, exon 1 of 9)	5' UTR (NM_009812, exon 1 of 9)	191.0	NM_009812	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	5.17023906406413	5.09284325777241	5.49262678099156	5.18463199436548	4.86345125276298	4.69082982698252	4.75857577557128	5.13662643685652	-0.704767886685342	0.031868513923912	0.174238311637134
Merged-chr3-41587149-2	chr3	41587053	41587253	+	801.974976	f0_balb.idr|f0_c57.idr	intron (NM_001130184, intron 2 of 10)	intron (NM_001130184, intron 2 of 10)	22273.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	3.87244209239391	3.72956149221374	3.97404254158302	3.94294302702549	4.10211247667068	4.04624526769279	4.09365080365057	4.06521644302659	0.517778845507024	0.216768178914104	0.523489930342912
Merged-chr15-98634892-4	chr15	98634804	98635004	+	805.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001286226, exon 1 of 12)	5' UTR (NM_001286226, exon 1 of 12)	137.0	NM_001286226	12297.0	Mm.3544	NM_007581	ENSMUSG00000003352	Cacnb3	Beta3|CAB3|Ca(v)beta3|Cchb3	calcium channel, voltage-dependent, beta 3 subunit	protein-coding	3.3039754984583	3.5130143069204	3.7493499377589	3.54534487126288	3.71276873101537	3.54501017021714	3.63656390078081	3.64954523902407	0.327923825588857	0.502286957207591	0.769577960847217
Merged-chr2-32590404-4	chr2	32590303	32590503	+	979.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011373, intron 2 of 4)	intron (NM_011373, intron 2 of 4)	3325.0	NM_011373	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	5.48623247741236	5.15478400225739	5.40498382803231	5.43313050483263	5.13391004104454	5.02923982739862	5.67639095689042	5.48331904298775	-0.0411875107965083	0.895076279552952	0.96073210268323
Merged-chr5-135957721-4	chr5	135957603	135957803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16773.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	8.67517462544067	8.90764166694867	8.43592049039978	8.55395169510202	8.46897400438137	8.41059323493327	8.55736595718252	8.37731774597046	-0.250300140017296	0.13393885698759	0.407538410666194
Merged-chr3-22021709-4	chr3	22021625	22021825	+	921.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54927.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.88459560591562	3.64416890326132	3.67394358889197	4.24897557579476	3.95346767032477	3.95580634388828	3.91594334023097	3.48835789038264	-0.16208578405945	0.750054165835435	0.901576629816678
Merged-chr10-70261160-1	chr10	70261060	70261260	+	699.0	f0_balb.idr	intron (NM_025807, intron 2 of 5)	intron (NM_025807, intron 2 of 5)	15884.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	3.13906768188814	3.24800612922551	3.2474030396403	3.37728958564171	2.59046695267187	2.85615005537061	2.94861071720527	2.89095651184766	-2.04770362409262	0.00230909000063309	0.0261301617098669
Merged-chr6-122819889-4	chr6	122819803	122820003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021899)	promoter-TSS (NM_021899)	-281.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	5.85859266006879	5.60421054294923	5.51928996170221	5.50381778110131	6.15950774435781	6.01125615392703	5.98004697657348	5.85544534709368	0.641473111929239	0.0119167902158664	0.0894304820525346
Merged-chr5-43880767-4	chr5	43880664	43880864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	11955.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	7.15148218338186	6.97458175390217	7.74328690328075	7.07411105142023	6.97151775771408	6.93048685775762	7.41010420977565	6.98942300460539	-0.240757467253062	0.322019433248071	0.633492378507668
Merged-chr2-160214290-3	chr2	160214183	160214383	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113211.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	5.40984396412556	5.40924844490057	5.46398133301287	5.3329695086482	4.71642733192849	5.21113985610765	5.14683303423433	5.26336025016455	-0.580908438562167	0.0618435001381741	0.263130064750231
Merged-chr6-49973706-3	chr6	49973606	49973806	+	775.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136535.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	3.10832910960765	3.24463965555637	3.22350893697485	3.39804465525245	3.16990087206423	3.08976349513098	2.97373861906535	2.98142943342913	-0.776186628274322	0.17888752478263	0.474918321826968
Merged-chr9-21760425-4	chr9	21760351	21760551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026282)	promoter-TSS (NM_026282)	-148.0	NM_001357331	67629.0	Mm.295642	NM_026282	ENSMUSG00000074476	Spc24	2410030K01Rik|AV109292|Spbc24	SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding	6.75917032804722	6.77195602187819	6.78828761092756	6.88299693667697	6.5855341481079	6.81839261243762	6.71180327576335	6.17428021160873	-0.304968522764473	0.17080285767981	0.463994222074314
Merged-chr10-94122278-4	chr10	94122176	94122376	+	960.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 9 of 20)	intron (NM_053072, intron 9 of 20)	-25655.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	4.60159319552653	4.56221621526829	4.84545462383976	5.05429150783734	5.33854803252206	4.82403790763877	4.53674300889208	5.22172214961892	0.461330706415477	0.231515543295817	0.541094889386075
Merged-chr15-86169884-4	chr15	86169800	86170000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-15828.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	7.92878773485578	7.85853046744553	8.0122799299756	8.08767589199349	7.95015723874647	7.96531739048868	7.75794794429286	7.90336625321932	-0.105653119777005	0.518749433897694	0.779728982270171
Merged-chr9-50567626-4	chr9	50567520	50567720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008360, intron 3 of 7)	intron (NM_008360, intron 3 of 7)	-6352.0	NM_025687	66654.0	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	6.22106902519798	6.31161347803637	6.58137180383113	6.31772864078338	6.49140868163424	6.39842452140035	5.9994096236239	6.23735558070522	-0.0881610178294874	0.711411074082476	0.884405406929924
Merged-chr10-117717754-4	chr10	117717658	117717858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7000.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	7.11217872229485	7.22913253076862	7.33502619335261	7.06362603698832	7.31493298475228	7.47033649249366	7.63296541716028	7.31970745022467	0.345910777329837	0.0662368735416204	0.274188684025531
Merged-chr5-145208148-2	chr5	145208048	145208248	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359192, intron 2 of 3)	intron (NM_001359192, intron 2 of 3)	3589.0	NM_001359188	22757.0	Mm.332842	NM_016683	ENSMUSG00000055991	Zkscan5	AI132486|AI326970|Zfp95|hKraba1	zinc finger with KRAB and SCAN domains 5	protein-coding	3.19664505141205	2.86120997541743	3.13686999369549	3.08230506762634	3.25764650942807	3.42407744825733	3.12565430039412	3.41105035091977	0.886773474090497	0.112903061336388	0.371420623567672
Merged-chr7-80371411-4	chr7	80371330	80371530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172903)	promoter-TSS (NM_172903)	-55.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	5.51912138983534	5.53920779797266	4.83246641982417	5.06036425208795	4.94519465093971	5.23511201030488	5.1342536269365	4.947644676589	-0.37488576389901	0.27125941231463	0.583005426328374
Merged-chr7-25278993-4	chr7	25278911	25279111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 2 of 20)	CpG	-3168.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	6.52350408053188	6.14067656735244	6.23134073519184	6.09814285251706	6.36108660288903	6.19730557034746	6.42896227807455	6.33862234497078	0.137013352388102	0.55496000748152	0.801191516655959
Merged-chr1-65054700-1	chr1	65054600	65054800	+	578.0	f0_c57.idr	Intergenic	RLTR45|LTR|ERVK	-3537.0	NM_007777	12968.0	Mm.258170	NM_007777	ENSMUSG00000070870	Cryge	Cryg-2|Cryg-6|DGcry-2|Elo	crystallin, gamma E	protein-coding	3.53437232261026	3.41194329010013	3.84460693784222	3.50890350214863	3.75762889803222	3.71005149115427	3.40118368604145	4.01295085074251	0.488687238974672	0.332756584605277	0.643656745899751
Merged-chr3-41742545-4	chr3	41742449	41742649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291048)	promoter-TSS (NM_001291048)	-35.0	NM_001081411	67161.0	Mm.331001	NM_001081411	ENSMUSG00000059834	Sclt1	2610207F23Rik|4931421F20Rik|CAGGS-SB10|Tg(ACTB-sb10)1Dla|Tg(CAG-sb10)1Dla	sodium channel and clathrin linker 1	protein-coding	8.95080063285136	9.14297808665378	9.01421710773857	9.19586862223725	9.12876243839691	9.14118752909324	9.44266912919157	9.09126160620162	0.154716753015558	0.321418449034651	0.633150046599807
Merged-chr9-63611156-4	chr9	63611028	63611228	+	762.325012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	8482.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	4.02693595480977	4.11794062159262	3.77792945785194	4.26445189537191	3.87503766364532	4.05560290474346	3.38960089398727	3.82969377226344	-0.716600689645843	0.148402559639364	0.430130539643714
Merged-chr7-18840683-4	chr7	18840605	18840805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153760, intron 1 of 4)	intron (NM_153760, intron 1 of 4)	739.0	NM_153760	243864.0	Mm.233503	NM_153760	ENSMUSG00000040987	Mill2	Micb	MHC I like leukocyte 2	protein-coding	5.35203856702442	6.18714039032128	5.9419831090237	5.82633167953754	6.18810913544574	5.9255167050654	6.20869836808001	6.06581710580489	0.379824917265027	0.169228224834882	0.461743236689619
Merged-chr12-80833733-4	chr12	80833599	80833799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178682, intron 2 of 5)	intron (NM_178682, intron 2 of 5)	43167.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	6.31658731371799	6.11308361018374	5.84584793880294	6.00194949395339	6.04627526214608	6.04647299888667	6.14161310952986	6.10965116697912	0.0156813022969837	0.947914936735296	0.981348536548879
Merged-chr19-10244497-2	chr19	10244397	10244597	+	645.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_198114)	TTS (NM_198114)	-3749.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	2.98654687384753	2.76957522469109	3.09700677038479	2.50375609500613	2.74144338004589	2.91193979954692	2.72574650124136	2.98525580216134	-0.0384844576259428	0.954314963790051	0.98373809489276
Merged-chr4-47303540-4	chr4	47303439	47303639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 33 of 39)	intron (NM_009928, intron 33 of 39)	-49683.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	6.52595893353394	6.8279284493668	7.10922572510509	6.33472612398449	6.73760244108028	7.04747477882929	6.4764716196361	6.84017061000595	0.0942379870158837	0.712626889100541	0.88495186291337
Merged-chr17-35766546-4	chr17	35766386	35766586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5964.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	5.40292096868774	5.23235126934666	5.61639040204103	5.18720648811929	5.34391992211615	5.25525350094634	5.5128182052954	5.72883305014849	0.201536694645807	0.499362374098986	0.76832204457204
Merged-chr1-176814200-4	chr1	176814103	176814303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029756)	promoter-TSS (NM_029756)	-457.0	NR_151682	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	6.69665937958757	6.68772555288139	7.00367667543166	6.68454571230823	6.74573634605816	6.88910380238825	6.53819594515159	6.88822037859267	0.00293126850201543	0.98894141185254	0.995581083851272
Merged-chr13-43785890-2	chr13	43785790	43785990	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	778.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	5.73551675601684	5.60494768510638	5.09700766379922	4.79089000265907	5.77450484995921	5.90937025944135	5.58807778763459	5.20166099251414	0.503719975153091	0.159144143934797	0.44644783908623
Merged-chr16-90830580-4	chr16	90830516	90830716	+	892.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_133572)	promoter-TSS (NR_133572)	-243.0	NR_133572	70967.0	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	3.74151004894476	3.72734620553941	4.10197882584815	3.28136142350593	3.69216597390413	3.50443431759153	3.56243548052732	4.05948595700687	-0.047620774656637	0.929881434006681	0.974727857709636
Merged-chr12-40558822-4	chr12	40558723	40558923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	112770.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	7.28563679887477	7.40751543952837	6.84434170693905	6.88277406639184	7.40275157228646	6.6615572077719	7.11259455175291	6.88176218089413	-0.0957481240014567	0.699316125376578	0.878762490081552
Merged-chr8-106148099-4	chr8	106148021	106148221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2233.0	NM_133792	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	6.07729127300482	6.13726863698807	6.33876866055752	6.31309516742541	6.43525036039907	6.2778453842152	6.34181372552235	6.70679064232544	0.33482862097192	0.146744609723536	0.427238816079498
Merged-chr19-10023836-4	chr19	10023728	10023928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153790, intron 1 of 10)	intron (NR_153790, intron 1 of 10)	5634.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	6.02737436066196	5.68557784917281	5.66593622982978	5.91395858434857	5.67444367482366	5.67535436395684	5.78481528800103	5.63545094573357	-0.23662534816816	0.360080018127607	0.665631362428384
Merged-chr5-139286106-4	chr5	139286025	139286225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	32628.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	5.04467011514953	4.42309871429155	5.04552969001377	4.53578861122844	5.38434524583098	5.21939566332436	5.08489096495044	5.16831186700632	0.87606723965616	0.0116430974416203	0.0879583987260763
Merged-chr9-43034492-4	chr9	43034392	43034592	+	713.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359232, intron 4 of 40)	intron (NM_001359232, intron 4 of 40)	71226.0	NM_001359232	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	4.37150979438407	3.70018328925047	3.94508368043446	4.14394024110549	3.93039223077268	3.84476616490603	3.92868603403359	4.21564541830655	-0.206983382511996	0.652503578122103	0.854687108944502
Merged-chr7-119899552-4	chr7	119899446	119899646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126475)	promoter-TSS (NR_126475)	-565.0	NR_126475	73919.0	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	5.7482825657118	5.90703025559372	6.23865123611418	6.18410111909072	6.26796134630888	6.05549777046626	6.0506473894463	6.35689521476106	0.229538727023379	0.361507308253693	0.666780562674967
Merged-chr13-110568669-4	chr13	110568572	110568772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	173628.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	7.61819440195425	7.93975850616471	7.68884436496894	7.91322885291045	7.95121078205898	7.96360581757822	7.97543344989775	7.56891614674026	0.0945972493914203	0.609284122137687	0.830965237885955
Merged-chr1-67038858-4	chr1	67038772	67038972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021295)	promoter-TSS (NM_021295)	0.0	NM_001190985	14768.0	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	7.06616253416337	6.92256456242123	7.19504101857707	7.48668248902382	6.84550989103517	6.92795679608493	7.3614486191268	7.36465104832944	-0.0715010810314808	0.758055091514842	0.904926340425875
Merged-chr8-26697480-1	chr8	26697380	26697580	+	1000.0	f0_c57.idr	Intergenic	Intergenic	126943.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	5.20753293085609	5.32149614504389	5.49966117110347	5.19543136084762	6.06003628471571	5.73299010768122	5.86471484235053	6.13963832082189	1.1122534877745	3.2494594057203e-05	0.000777456373242908
Merged-chr14-21053307-2	chr14	21053207	21053407	+	746.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018829)	promoter-TSS (NM_018829)	733.0	NM_134079	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	2.70245575624501	2.82416902314946	2.91580596640208	2.72792194166526	3.14249734278513	3.02662166591069	3.0872234497359	3.44537754249995	1.66330731271034	0.00543565889143758	0.0505229517150216
Merged-chr7-73528581-4	chr7	73528482	73528682	+	882.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	13164.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	3.61682630163647	3.94981858439645	3.67356545540349	3.72532111027306	3.64276027624331	3.67523933637657	3.86016259756726	3.9651432718721	0.117829181474755	0.800096136904766	0.922895620158559
Merged-chr1-157386697-1	chr1	157386597	157386797	+	693.333313	f0_balb.idr	intron (NM_177644, intron 1 of 17)	intron (NM_177644, intron 1 of 17)	-25655.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	3.26850469160877	3.26906299036285	3.21618007200411	3.53222450532	2.70396228588594	2.71724011289664	2.97011511866224	2.84295850427625	-2.4743910288712	0.000331482719070461	0.00550761168550801
Merged-chr13-5769858-4	chr13	5769745	5769945	+	991.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88247.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	4.9905748645552	5.12093751793119	4.95886328788581	4.97344534286435	4.60006328549498	4.61765487606364	4.75957244053725	4.57418769442001	-0.775132344375328	0.0192087804077761	0.12445492268752
Merged-chr5-105496837-3	chr5	105496740	105496940	+	940.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-22631.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	4.09563060316576	4.66529583563864	4.18749092610149	4.49703793716807	3.95079701848633	3.63234959450712	3.87648532044262	3.83347620936262	-1.47605040026431	0.00141085543921292	0.0177771781390931
Merged-chr18-64921074-4	chr18	64920991	64921191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	33335.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	6.14050381378804	5.54061703390203	5.63925914468906	5.93102190084052	5.91502567026082	5.58341422822491	5.76144664274495	5.55218886186904	-0.190893586808342	0.499852752628854	0.768524538060588
Merged-chr5-145178736-4	chr5	145178666	145178866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291249, intron 6 of 7)	intron (NM_001291249, intron 6 of 7)	11553.0	NM_001291248	54188.0	Mm.196884	NM_178576	ENSMUSG00000029625	Cpsf4	30kDa|C79664	cleavage and polyadenylation specific factor 4	protein-coding	6.64452590513663	6.53988954948836	6.30765479622993	6.53645852543508	6.45190392045317	6.50379863362172	6.50404503108239	6.5957296727951	-0.00476803034766302	0.982009562509132	0.993573193675204
Merged-chr4-55805493-4	chr4	55805406	55805606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-273031.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	6.042250651568	5.77843654649361	5.76496386685738	6.31797850944386	5.99048289021937	5.74815950146341	6.07327615268394	6.28333382040049	0.0363631367391421	0.895366593312077	0.960823579379062
Merged-chr13-104032708-4	chr13	104032614	104032814	+	906.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029447, intron 12 of 12)	intron (NM_029447, intron 12 of 12)	76900.0	NM_029447	75805.0	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	5.12473450412918	4.88996795045903	5.34998168215204	5.49708687250535	4.63731711226015	4.78277276468735	4.53440102085623	4.84919529620626	-1.08597673572829	0.00178195735732867	0.0213808506902076
Merged-chr1-182255227-4	chr1	182255120	182255320	+	896.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26975.0	NM_001360783	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	4.86912909331948	5.11326794443648	5.12881935319852	5.17614429302212	4.36988878172388	4.58235085865699	4.73502751191537	4.83028025077696	-0.935992029591517	0.00673718588692326	0.0591959207808062
Merged-chr7-44986694-4	chr7	44986599	44986799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019830)	promoter-TSS (NM_019830)	-201.0	NR_045266	100502630.0	Mm.490013	NR_045266	ENSMUSG00000087138	Gm15545	-	predicted gene 15545	ncRNA	9.28325402641242	9.65454627208085	9.22449024092851	9.14178801568831	9.2509938689189	9.46868906659724	9.4191173400374	9.09933262531203	-0.0294815665859036	0.865900932581852	0.949749017339451
Merged-chr2-117108252-4	chr2	117108111	117108311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12860.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	7.36105706269463	7.15115714815704	7.8328458293438	7.71400189116142	7.18086434055118	7.15645560536248	7.09593551853921	7.19703619045494	-0.522585959232833	0.0140779760626609	0.100386321194565
Merged-chr17-24632645-4	chr17	24632559	24632759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286720)	promoter-TSS (NM_001286720)	-23.0	NM_001357615	18207.0	Mm.148315	NM_008743	ENSMUSG00000041429	Nthl1	Nth1|Octs3	nth (endonuclease III)-like 1 (E.coli)	protein-coding	5.99971912715853	6.08400916025671	5.67250715629007	6.07206493482558	5.86215941852495	5.61795370347646	5.53293096059338	5.86622672005169	-0.389936878079186	0.139828102033112	0.415809846031704
Merged-chr2-62646749-1	chr2	62646649	62646849	+	545.0	f1_balb.idr	promoter-TSS (NM_027835)	promoter-TSS (NM_027835)	-494.0	NM_001164477	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	3.09000388150723	2.93545762465526	3.15007290115042	3.00348556557199	3.18390773679481	3.13739637913101	3.3000123326343	3.20536167992776	0.652651259668033	0.234617638230392	0.544447848974703
Merged-chr13-37581094-4	chr13	37581002	37581202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	235757.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.85746393567463	6.31633945213934	6.0355453778627	5.7631643339555	6.00442564180813	5.77450710897064	6.12205434769281	5.53205721600406	-0.191860737962787	0.495627957758353	0.765874409085869
Merged-chr15-53415994-4	chr15	53415893	53416093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69810.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	5.82117011406457	6.38434957152099	6.15325627484	6.23094439716349	6.39528763331347	6.12938416806213	6.74526247435793	6.52417035024719	0.444185455856548	0.0801638831416524	0.306806379080529
Merged-chr3-137969375-3	chr3	137969268	137969468	+	946.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 1 of 8)	intron (NM_011932, intron 1 of 8)	12181.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	4.34009214484024	4.19597255811967	4.29791263394323	4.36110586888707	4.29280773176259	3.82329548727592	4.68046638367258	4.15751070224959	-0.0556297416186177	0.897725791493122	0.961787292102244
Merged-chr13-64153379-4	chr13	64153274	64153474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175494)	promoter-TSS (NM_175494)	-175.0	NM_175494	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	8.95696732096538	9.1170403598202	9.03192109788484	9.29851897776347	9.36853207167763	9.4380191829106	9.68283600779664	9.22710286200191	0.403143366031701	0.0144984138859727	0.102389384064853
Merged-chr4-62626588-4	chr4	62626490	62626690	+	837.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019492, intron 14 of 19)	intron (NM_019492, intron 14 of 19)	6918.0	NM_134257	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	4.30174188437655	4.04522654034447	4.08118543604683	4.00204690843447	4.1546816110774	4.10342284569762	4.28274623370445	4.17191892530154	0.198812935314783	0.621738634156823	0.837999133509723
Merged-chr8-94076959-4	chr8	94076821	94077021	+	837.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026116, intron 13 of 16)	intron (NM_026116, intron 13 of 16)	21890.0	NM_026116	67378.0	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	3.74556625087995	3.55552985789372	3.84039023918199	3.5492483362284	3.72939833238898	3.5901626502415	3.40139623727284	3.74388868419825	-0.131383077880549	0.78811429006287	0.917955638958371
Merged-chr1-91252200-4	chr1	91252098	91252298	+	992.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355764, intron 1 of 10)	intron (NM_001355764, intron 1 of 10)	1632.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	3.990460399927	4.67943476811298	4.60901806542201	3.70885189344155	4.4939056101255	4.88875889865454	4.62364678526608	4.56746961263306	0.76729321294444	0.0963021658422654	0.340048212247575
Merged-chr6-22347657-4	chr6	22347528	22347728	+	997.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138587, intron 1 of 9)	intron (NM_138587, intron 1 of 9)	8453.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	5.3519989237475	5.56034138505232	5.51914896608234	5.69144663243705	5.06999291162212	5.15745673992107	5.46523089841103	5.08750835762183	-0.623471817909765	0.0348973515884084	0.184900892415611
Merged-chr11-83615699-4	chr11	83615602	83615802	+	790.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 5 of 8)	intron (NR_036453, intron 5 of 8)	-22615.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	3.5978426175828	4.20944870296904	4.08869155264796	4.10385729485565	3.72914354504017	4.06748168750984	4.23845235297885	4.03997243313975	0.00233241331807866	0.996024038290167	0.998543856884531
Merged-chr7-118277646-4	chr7	118277526	118277726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33719.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	7.19948217546127	7.24764220114084	6.75564257225804	7.23966842751676	7.37185270525257	7.34398414445286	7.02537916255152	7.15082609343323	0.136181046877307	0.512867469173624	0.776017039843318
Merged-chr12-95738312-4	chr12	95738193	95738393	+	865.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	46067.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	3.82245992881392	3.67821309188937	3.92030469910402	3.90755484827413	4.11163582600466	3.52574438495466	3.99262580692886	3.65979021514157	0.0510260811625804	0.915692323034587	0.968763998229684
Merged-chr12-32008891-1	chr12	32008791	32008991	+	1000.0	f0_c57.idr	intron (NM_011158, intron 2 of 10)	B1_Mur2|SINE|Alu	52388.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	3.13643970173487	2.96571286529009	3.06117817559709	2.40690851078928	4.1019503507722	3.99893317279857	4.08307913121556	3.34113612780146	3.97474230332582	1.50730705267267e-07	6.23770980826672e-06
Merged-chr1-128245132-4	chr1	128245054	128245254	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356529, intron 1 of 12)	intron (NM_001356529, intron 1 of 12)	1017.0	NM_001356529	67812.0	Mm.293321	NM_026390	ENSMUSG00000026353	Ubxn4	1300013G12Rik|Ubxd2|mKIAA0242	UBX domain protein 4	protein-coding	4.69529855423088	4.85337792422641	4.77578585078951	4.71872871744501	4.94627528881422	5.12708379409756	4.93280923686812	5.01899674839358	0.49488338754103	0.118426530740054	0.380752609943822
Merged-chr14-47647875-2	chr14	47647754	47647954	+	800.333374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-1457.0	NM_001347527	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	4.15859135438944	3.83058042366753	3.54537873281863	3.78867775590506	3.57049135946734	3.72241283663249	3.7518238990986	3.60261798859208	-0.55637635227343	0.250970810465855	0.562198310563307
Merged-chr5-140648687-4	chr5	140648571	140648771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	CpG	360.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	4.60422198309573	4.40467543703222	4.64264980476384	4.18350951269061	4.54573135066721	4.69829628703066	4.50515600532897	4.4818617225608	0.242375343525378	0.519906465084699	0.780396926998393
Merged-chr1-74243019-4	chr1	74242907	74243107	+	877.2374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	ID_B1|SINE|B4	6490.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	4.30958783375715	4.0105267242403	4.08042680423785	4.29450555531892	4.12748751892517	4.34963348594381	4.15924336812957	4.427613511872	0.195097899527513	0.629210802148559	0.842074901029073
Merged-chr11-46815510-3	chr11	46815398	46815598	+	859.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178759, exon 2 of 9)	exon (NM_178759, exon 2 of 9)	4699.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	3.46621249397166	3.42825418286408	3.29661304967584	3.18617406298807	3.48745046069645	3.68337269868396	3.34327016512528	3.29499363057211	0.424368223577867	0.416797448976457	0.710673328516556
Merged-chr5-17835946-4	chr5	17835828	17836028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159555)	promoter-TSS (NM_001159555)	-32.0	NM_007643	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	6.30180623379612	6.53569465269548	6.63610943438771	6.96819284232087	7.19040025000911	7.11552913738546	7.41882641189152	6.82706521625473	0.703023343689348	0.00373628850720332	0.0379611043663281
Merged-chr2-92484421-3	chr2	92484334	92484534	+	860.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23916.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	3.46112972768805	3.62861601819213	3.40081572602925	3.46905684131685	3.76474424277535	3.79935218899578	3.56232028168223	3.90828785325253	0.856188827207792	0.0721389590705225	0.288571808379493
Merged-chr10-17275416-4	chr10	17275315	17275515	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179633.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	5.14858155367332	4.72976479450958	5.02040035651964	5.68541346185605	4.68064788093714	4.80805214020653	4.85356409173824	5.11486859424123	-0.667003387848531	0.0789236039697842	0.304016452145991
Merged-chr11-44382297-4	chr11	44382200	44382400	+	985.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17763.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	5.57366994855167	5.79793477084614	5.89975171398384	5.46090383459724	5.66500136747121	5.74914068172606	5.11177531180107	5.0953626595366	-0.410262255282966	0.197549059297439	0.49895982014778
Merged-chr7-99130227-4	chr7	99130132	99130332	+	921.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	10912.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	4.69181374160133	5.04732448736696	4.28096667945458	3.48297529293072	5.23732850781002	4.86996455271847	4.9797244037167	4.68941099618042	0.911732857799611	0.0698975984948927	0.282957468194732
Merged-chr11-69554898-4	chr11	69554769	69554969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007911, exon 5 of 5)	3' UTR (NM_007911, exon 5 of 5)	5368.0	NM_007911	13643.0	Mm.249637	NM_007911	ENSMUSG00000003934	Efnb3	EFL-6|ELF-3|Elk-L3|Epl8|LERK-8|NLERK-2	ephrin B3	protein-coding	7.27054834787286	7.44420017206406	7.19702704543474	7.00045181060304	7.08893417480221	7.29405693837593	7.00967259662405	6.92366009236348	-0.19911908449664	0.329155935813252	0.640433817763756
Merged-chr7-28811417-4	chr7	28811321	28811521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177301, intron 1 of 12)	CpG	531.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	6.61653174449641	7.08391457288466	6.81523092483441	6.8328120232135	6.90778657510591	6.93449964254661	6.66327824455368	7.06401972853977	0.0690250029366739	0.744818685709552	0.899357438330432
Merged-chr7-82691624-4	chr7	82691539	82691739	+	954.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175317, intron 12 of 19)	intron (NM_175317, intron 12 of 19)	43025.0	NM_175317	101592.0	Mm.238020	NM_175317	ENSMUSG00000038563	Efl1	4932434J20Rik|6030468D11Rik|AI451340|AU019507|AU022896|D7Ertd791e|Eftud1	elongation factor like GPTase 1	protein-coding	4.47613536910581	3.92642849551751	4.4324724348118	5.1773357470176	4.55732369002788	4.51766610979854	4.82816453227479	4.63742091322369	0.0791438102653007	0.866085911777853	0.949849451703118
Merged-chr11-23261603-2	chr11	23261503	23261703	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035226, intron 2 of 25)	B2_Mm1a|SINE|B2	5562.0	NM_134014	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	2.89650635235441	3.26152928940672	3.02948646854927	2.53453129684988	3.03456140106148	3.14264759773262	3.39410413298601	3.08953902861576	0.856553694213915	0.193266053060804	0.493524757598945
Merged-chr18-69471885-3	chr18	69471785	69471985	+	668.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 5 of 19)	intron (NM_001361128, intron 5 of 19)	125725.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	2.94847547478967	3.0646517850826	2.89004520887557	3.49705049775562	2.34993889318489	2.57571839290119	2.54269128085828	2.46864663112075	-4.58160714907457	2.1289975127408e-05	0.000538330067351253
Merged-chr3-65666447-8	chr3	65666330	65666530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037923, intron 1 of 2)	CpG	202.0	NM_001166659	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	7.22371519092158	7.61534257122387	8.21304489823983	7.94177047802184	7.01659389649996	7.07874536023268	7.34967387192419	7.29781611241361	-0.813791717384959	0.000710309620605908	0.0102367136029779
Merged-chr8-26980085-4	chr8	26980013	26980213	+	968.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001101502, exon 2 of 2)	3' UTR (NM_001101502, exon 2 of 2)	2777.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	4.99326637891307	4.83873618624646	5.19640760512678	5.3282137542571	5.58149844981113	4.9351573300103	5.17078705028379	5.2536183364329	0.286012005375698	0.394674101188432	0.693696530342229
Merged-chr2-103565374-3	chr2	103565269	103565469	+	602.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178890)	promoter-TSS (NM_178890)	-941.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	2.85345071750867	2.76789376198316	2.72019639989427	3.02638493015353	2.95909023639578	2.96001678704015	2.90548129637248	3.02974009593579	0.451973874152338	0.463185354481697	0.744626216158929
Merged-chr13-64448192-1	chr13	64448092	64448292	+	570.25	f0_balb.idr	Intergenic	Intergenic	15639.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	3.39639074799737	3.35175906486544	3.67703242987519	3.33080972415018	2.81204304258102	3.21794629301198	2.88612055503005	3.16715316896218	-1.68900098035413	0.00663059942901916	0.0584614686929462
Merged-chr17-27026118-3	chr17	27025993	27026193	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149749, intron 1 of 6)	intron (NR_149749, intron 1 of 6)	2534.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	3.28398709877337	3.36039328211649	3.44991854285244	2.99243794506835	3.18100449615266	3.27375785167472	3.38315817310928	3.49851346518309	0.235297843265904	0.671435406976427	0.864749322980714
Merged-chr15-100423106-4	chr15	100423009	100423209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356952)	promoter-TSS (NM_001356952)	-54.0	NM_008732	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	7.93686225020085	7.97127676954706	7.56752203446791	7.54043129296637	8.19520429301551	8.1432687872961	7.92066941608078	7.74516510137636	0.326700584277565	0.0995058436085871	0.345988297699947
Merged-chr13-51397971-4	chr13	51397842	51398042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10676.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	5.96403337745926	6.15593137651797	6.57274169094005	6.5664766797025	6.19564638781649	6.23698375572633	6.58327490352599	6.42470716878576	0.0202614445563179	0.93712205703682	0.977210490892393
Merged-chr10-28414209-3	chr10	28414120	28414320	+	970.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359356, intron 7 of 30)	intron (NM_001359356, intron 7 of 30)	-254140.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	4.11101187241934	4.16703071534536	4.39984463575378	4.83133196454888	3.60492079475601	3.59349805509801	3.89619980089817	3.73862167953456	-1.98148039961895	5.83969366278013e-05	0.00129085736076139
Merged-chr8-70352709-3	chr8	70352645	70352845	+	775.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030680, intron 1 of 23)	CpG	534.0	NM_030680	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	3.06434078966268	3.29781368276046	2.9995137747262	2.46615696503974	3.10056449322759	3.41525500126255	3.28326129158873	3.12524227479425	0.919936550121356	0.180673800312068	0.47704412057244
Merged-chr11-79623303-4	chr11	79623240	79623440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003283)	promoter-TSS (NR_003283)	-177.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	7.74893056931435	7.64708015724436	7.4793045636471	7.34959580831314	7.64607156449295	7.82421745944476	7.29231062932497	7.20062933088125	-0.0553562715318373	0.794667234344014	0.920584812443453
Merged-chr3-65318127-4	chr3	65318035	65318235	+	804.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357358, intron 7 of 13)	intron (NM_001357358, intron 7 of 13)	-15450.0	NR_126080	102637797.0	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA	3.92781676802405	3.68181862763507	3.71434502918038	3.56133019552631	4.36872898164416	4.05172346295799	4.09306338183143	3.8757962774984	1.12230045344861	0.0121092385478925	0.0905286724714256
Merged-chr1-170742608-4	chr1	170742518	170742718	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 15 of 15)	Lx8|LINE|L1	98086.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	4.9290064437845	4.64540564414875	4.8619249136091	4.51161340794242	5.00081036548323	4.80873502863755	4.90575098444447	4.49888080020955	0.192831933796565	0.589848180274666	0.820608713792594
Merged-chr6-43848668-4	chr6	43848590	43848790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-182412.0	NM_001311111	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	6.74423274605074	6.73392864391308	7.12853989164821	6.83773951505916	6.29844949117106	6.30405282712257	6.60923699329393	6.09653586797835	-0.765819813018404	0.000866197387444236	0.011999817796982
Merged-chr11-106206831-3	chr11	106206694	106206894	+	630.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026009, intron 6 of 12)	intron (NM_026009, intron 6 of 12)	9573.0	NM_026009	67163.0	Mm.22109	NM_026009	ENSMUSG00000078622	Ccdc47	2610204L23Rik|C88307|asp4|calumin	coiled-coil domain containing 47	protein-coding	3.26300568635624	2.94638545283517	2.99170960774784	3.06677878208952	3.06097036394057	2.75126375441712	2.98117115289063	2.92827179633507	-0.550213555549799	0.367924146599417	0.672413095509279
Merged-chr10-74967062-4	chr10	74966992	74967192	+	922.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010311)	promoter-TSS (NM_010311)	-85.0	NM_010311	14687.0	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding	4.71942956246572	4.60219915967959	4.75477260034071	4.86709907680521	4.15492864296099	4.17083718176739	4.42742844962158	4.44469164577686	-1.02205161056679	0.00643172288336223	0.0571397407781878
Merged-chr6-89296578-4	chr6	89296513	89296713	+	933.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10888.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	4.74154136223735	4.5010835571707	4.77862374800756	4.83050947294444	4.71104063624383	4.67541643664763	4.38848558424327	4.8449516233894	-0.122874035555231	0.729940205161329	0.892824063905503
Merged-chr17-35030303-1	chr17	35030203	35030403	+	885.0	f1_balb.idr	intron (NM_013600, intron 19 of 23)	intron (NM_013600, intron 19 of 23)	-2287.0	NM_023893	78376.0	Mm.390966	NM_023893	ENSMUSG00000036185	Sapcd1	2810436B06Rik|G7d|Ng23	suppressor APC domain containing 1	protein-coding	2.21800863595196	2.31437829493193	2.30070063866433	2.03683992875857	2.86562497091418	2.76510064337805	2.64246984489311	2.82581987210716	3.84601138562779	3.09145564306014e-06	9.70651615427339e-05
Merged-chr8-69654452-4	chr8	69654343	69654543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177527)	promoter-TSS (NM_001177527)	-113.0	NM_001177527	636741.0	Mm.480188	NM_001177527	ENSMUSG00000091764	Zfp964	4732490P12|EG636741|Gm7187	zinc finger protein 964	protein-coding	7.59377749548323	7.63870817839798	7.28612375745058	7.48739954421986	7.08122141883596	7.30540980657553	7.24974549181325	6.92785838349579	-0.489696715922268	0.0111242123886412	0.0851042899410026
Merged-chr2-26604417-4	chr2	26604330	26604530	+	976.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026212)	promoter-TSS (NM_026212)	-13.0	NM_026212	67512.0	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	5.33182939631087	5.31925267084218	5.27599256667332	5.20122293331861	4.8258798573409	5.1592345979006	4.95947154676237	5.05096663891623	-0.539068057897067	0.0762198663114275	0.298247866332052
Merged-chr1-79762975-4	chr1	79762863	79763063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-1194.0	NM_027057	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	5.58018798690864	5.31875363688398	5.28429828996507	5.61833497743639	6.27393099650614	6.24286538306633	6.4580791052475	6.41297453455269	1.38026296208368	7.44238254050552e-08	3.27607511967002e-06
Merged-chr10-117839090-4	chr10	117838996	117839196	+	993.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	B3|SINE|B2	6878.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	5.07646565561374	5.3988844862576	4.97439697867454	4.67514504000961	5.27385122615747	4.91958021071088	5.2346581688804	4.85929405178648	0.0868487051148175	0.805527785921961	0.925187779745038
Merged-chr11-34427410-4	chr11	34427308	34427508	+	947.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 27 of 51)	intron (NM_033374, intron 27 of 51)	112586.0	NM_001025382	574403.0	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	5.41797859373197	4.73869004875701	5.52537998551128	5.4173270742546	5.56296411016506	4.96993582957817	5.59473268047717	5.32900100831259	0.148912716469068	0.665852169767371	0.861690331112899
Merged-chr6-25809279-4	chr6	25809153	25809353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133931)	promoter-TSS (NM_133931)	-27.0	NM_133931	101185.0	Mm.274589	NM_133931	ENSMUSG00000029676	Pot1a	1500031H18Rik|AI851169|Pot1	protection of telomeres 1A	protein-coding	8.9097174536927	8.90108867675546	8.9883989823337	9.08892887468538	9.11131437361933	9.16646944642038	9.10869629663767	8.78608295687946	0.0931521641376756	0.548075092570359	0.797209298335866
Merged-chr2-150362763-4	chr2	150362677	150362877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027017)	promoter-TSS (NM_027017)	-12.0	NM_027017	69277.0	Mm.272470	NM_027017	ENSMUSG00000063364	3300002I08Rik	2900016H11Rik	RIKEN cDNA 3300002I08 gene	protein-coding	6.61111987225211	6.55473207315246	6.39708248667896	7.02612900048572	6.91527743453729	7.02872005277891	7.38545889522521	6.87411535173391	0.526853895593353	0.0301998354013792	0.168042064105282
Merged-chr10-118103451-4	chr10	118103335	118103535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38352.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	8.86796658196139	9.0263577344852	9.04900116499357	8.90134155627606	8.86889480068302	8.77121201838575	8.96468233815696	8.70754448270678	-0.16057146157321	0.276051492304252	0.588116016284595
Merged-chr12-84615306-4	chr12	84615185	84615385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008992, intron 2 of 18)	intron (NM_008992, intron 2 of 18)	2181.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	5.72856789790628	6.61766867338054	5.98242023537821	5.96447580056588	5.82325122871324	5.27141100612245	5.4802978662625	5.44231241247124	-0.954099642219582	0.00277412532898561	0.0300501395209051
Merged-chr10-60082594-1	chr10	60082494	60082694	+	652.0	f0_balb.idr	intron (NM_026937, intron 9 of 10)	ORR1F|LTR|ERVL-MaLR	-23663.0	NM_052994	94214.0	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	2.93553782912004	2.9884224906504	3.15749128800494	3.19864584911719	2.97805802588389	2.77185903025379	2.58694973155062	2.80758600426164	-1.24885209144263	0.0628337066365253	0.26569479027394
Merged-chr5-123149834-4	chr5	123149722	123149922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040398, intron 6 of 16)	intron (NM_001040398, intron 6 of 16)	7629.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	5.01144513950537	4.68705484967658	5.14735716170233	5.03921730437405	5.50133897592386	5.15227039475091	5.29953206718101	5.17542482645956	0.592422333276898	0.0593367475036111	0.256716973420608
Merged-chr6-117277040-3	chr6	117276940	117277140	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108505.0	NM_021704	20315.0	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	3.09901914507014	2.94011925831355	3.21143827732821	3.08664327970923	2.97714140949189	2.79745430235449	3.39340623575828	2.9753677699084	-0.124281321663987	0.839286301256333	0.938895262970456
Merged-chr17-34912294-4	chr17	34912197	34912397	+	911.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286575, intron 25 of 27)	intron (NM_001286575, intron 25 of 27)	-2169.0	NM_023557	70129.0	Mm.183126	NM_023557	ENSMUSG00000007034	Slc44a4	2210409B01Rik|NG22|mTPPT1	solute carrier family 44, member 4	protein-coding	3.91298955832392	3.84424233357072	3.51555826989819	3.69020209412891	4.17204463422514	3.76083810350056	4.19727875198318	4.00563424947167	0.846791432324677	0.0622967872153012	0.264130510912433
Merged-chr4-53159371-3	chr4	53159276	53159476	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	519.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	6.36342913076972	6.64826177043005	6.64289969008056	6.00145868851284	6.4590936212984	6.42694769345915	6.67996392070609	6.43120808571556	0.115183357665451	0.645778590112249	0.850967755213266
Merged-chr2-124647887-4	chr2	124647771	124647971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	-5710.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	5.86847557655242	5.7204890045179	5.8212356102202	5.96726959052932	6.15046364138888	6.02141000333508	6.05539699998988	6.02096734317198	0.332321080098077	0.16564521794404	0.456516860960965
Merged-chr8-3279572-4	chr8	3279465	3279665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010568)	promoter-TSS (NM_010568)	52.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	7.42596437176505	7.53572487805109	7.91013630514648	7.62768800236108	7.44187901244542	7.41432138894172	7.50276926750358	7.20842824941201	-0.316581424622114	0.09766830565584	0.342493463803185
Merged-chr13-23530400-4	chr13	23530327	23530527	+	980.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153173)	promoter-TSS (NM_153173)	-617.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	5.18954658096044	5.10231100385133	4.64894790870481	4.30256134519596	5.4430732986853	5.17472381350819	4.83243076804058	5.03055026114979	0.57497600683497	0.1414502254833	0.418500523720834
Merged-chr11-94689153-4	chr11	94689050	94689250	+	851.645874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-11657.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	4.20438833442181	4.06652062213342	4.07213196685105	3.98445569448939	4.14800705616373	3.75061207705542	4.09989268752348	4.11547363295155	-0.0849638035273707	0.841630503840959	0.939882709487764
Merged-chr11-115612939-4	chr11	115612835	115613035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243586)	promoter-TSS (NM_001243586)	34.0	NM_001243584	69674.0	Mm.390387	NM_027162	ENSMUSG00000020743	Mif4gd	1110014L05Rik|2310075G12Rik	MIF4G domain containing	protein-coding	5.42950269769789	5.51455684507213	4.96583459163607	4.81140485690846	5.55049650532681	5.68414792098679	5.28740841508152	5.5073926630414	0.558687815881731	0.0880863910443905	0.323779847114309
Merged-chr3-81961477-3	chr3	81961396	81961596	+	890.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019911, exon 10 of 12)	exon (NM_019911, exon 10 of 12)	14232.0	NM_019911	56720.0	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	2.90252708056719	2.89336769954239	2.980513704798	2.67818677331051	3.43507734921869	3.85005689832797	3.74792822903734	3.63116674041194	3.23965665936672	3.08294179170938e-08	1.47871100938061e-06
Merged-chr16-73098976-3	chr16	73098886	73099086	+	750.416687	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	435837.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	4.07992825972849	4.22519375147073	4.12806335854842	4.0983655138793	4.00781785167517	4.10278329636586	4.32207788709963	4.17133474314621	0.0475564751395414	0.906143640436701	0.965212549756255
Merged-chr10-13540089-4	chr10	13539983	13540183	+	917.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019961, intron 3 of 11)	intron (NM_019961, intron 3 of 11)	-12824.0	NM_025748	66757.0	Mm.331841	NM_025748	ENSMUSG00000019808	Adat2	4933426M09Rik|Deadc1	adenosine deaminase, tRNA-specific 2	protein-coding	4.37082773365091	4.28399371749477	4.42071953358306	4.59678816194498	5.0340105078188	4.81864578547333	4.97250638222133	5.21912331110377	1.20420892101574	0.000701836564852791	0.0101516002539437
Merged-chr12-69790677-4	chr12	69790580	69790780	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183294)	promoter-TSS (NM_183294)	27.0	NM_183294	71091.0	Mm.132325	NM_183294	ENSMUSG00000020990	Cdkl1	4933411O17Rik	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding	4.45487047385925	4.42390044475177	4.33504249625812	4.21015848162312	4.41063261203119	3.88403826063068	4.47191153600179	3.88411764739463	-0.368134104456604	0.400096074359806	0.698035489046584
Merged-chr7-114079493-4	chr7	114079362	114079562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	38319.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	5.79033391339952	5.58570010457935	6.01296561594762	5.96421348500823	5.58090009353542	5.70070721087116	5.98217352927739	5.92472619921777	-0.0866964194780499	0.746784919309447	0.900253617240193
Merged-chr7-89979743-3	chr7	89979641	89979841	+	961.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021876, intron 1 of 11)	intron (NM_021876, intron 1 of 11)	1235.0	NM_021876	13626.0	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	3.5074998852951	4.15166451296421	4.1916427910094	4.18477944004562	4.03025523337382	3.93471619870209	3.79939922563375	3.96677050651118	-0.289209695046107	0.544368036048531	0.795184841840149
Merged-chr16-21908668-4	chr16	21908607	21908807	+	814.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172821, exon 7 of 13)	exon (NM_172821, exon 7 of 13)	16738.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	4.09629755492991	4.0396553264536	4.00658621557769	4.1935782062571	3.78932695105731	3.7469110466849	3.67652095506446	4.09436341189956	-0.714677893313153	0.108515637152331	0.363575554325258
Merged-chr6-113624048-4	chr6	113623947	113624147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009507)	promoter-TSS (NM_009507)	26.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	5.79994377979262	6.41511734272728	6.18721828270689	5.95576946274866	6.40659090206801	6.3625935650513	6.26724102211612	5.94677075525236	0.236699562721343	0.363424408170373	0.668574361907056
Merged-chr13-113913735-6	chr13	113913632	113913832	+	991.511108	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	119224.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	5.31693903252436	4.98085047296968	5.97659504575008	6.01618216629349	5.28456970396202	5.00631545443375	5.57486065809881	5.76668763248523	-0.364831371341002	0.332453207578449	0.64346986397225
Merged-chr14-101595811-4	chr14	101595702	101595902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	13389.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	5.99630477973814	5.54987366038539	5.58844193193094	6.28016519922292	5.81632322393377	5.51978634522778	5.96682687507856	5.92990844523707	-0.144807282844601	0.632211925582779	0.843743440414307
Merged-chr8-107277654-4	chr8	107277560	107277760	+	976.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).3	intron (NR_039557, intron 2 of 3).3	-15810.0	NM_018823	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	4.66500160736051	5.13534079099407	5.14004792297911	5.19279639480746	4.91046748617806	4.88703792428062	5.11465647434463	4.8661715829626	-0.222529084567059	0.501269045657765	0.769144180751343
Merged-chr1-82793297-4	chr1	82793188	82793388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24832.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	6.17843318039665	5.83066032768562	6.3061043569671	6.07339374982988	5.99482510185099	6.03283892598256	5.64243556821281	6.28427824828433	-0.149200311039646	0.57245219752145	0.811251013052168
Merged-chr7-45299951-4	chr7	45299816	45300016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17043.0	NM_001033176	76713.0	Mm.425445	NM_001033176	ENSMUSG00000070568	Slc6a21	1700039E15Rik|Gm19188	solute carrier family 6 member 21	protein-coding	5.60715203889909	5.9539877289105	5.68936131971693	5.7369534181129	5.61950779661413	5.96519125483405	5.98109965831906	5.96631275521128	0.204110325149304	0.4353307659468	0.724523208691715
Merged-chr5-67608997-3	chr5	67608863	67609063	+	830.744446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033415, intron 1 of 1)	intron (NM_001033415, intron 1 of 1)	1080.0	NM_001033415	330096.0	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	3.63423559745368	3.89265594983841	3.79482297784211	3.78778191234887	3.95894671425795	3.80742472522702	3.62136703847888	3.79265064918118	0.0734587021685107	0.872220868253774	0.95194285598202
Merged-chr13-22042512-4	chr13	22042393	22042593	+	791.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178198)	promoter-TSS (NM_178198)	456.0	NM_178186	319167.0	Mm.263165	NM_178186	ENSMUSG00000069301	Hist1h2ag	-	histone cluster 1, H2ag	protein-coding	3.66347665243701	3.61786838530358	3.66399364226458	3.39928074925115	3.87018477358638	3.41000386590349	3.53813319356625	4.21839711913242	0.651292549925067	0.209394557308574	0.513940748725158
Merged-chr8-121950362-8	chr8	121950202	121950402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110100)	promoter-TSS (NM_001110100)	-190.0	NM_016812	53325.0	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	6.69321395036959	6.99688055926458	7.24822789048275	6.51337141512717	6.93884121434048	7.15328809109624	6.9413279618818	7.19126783042913	0.24531446437131	0.294449209884555	0.606651624127959
Merged-chr1-152525120-4	chr1	152525020	152525220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 15 of 17)	intron (NM_016846, intron 15 of 17)	100097.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.56228556657913	6.92226642376746	6.65779888635367	6.5034151597983	6.62938909862159	6.77194673401318	6.49700854784348	6.57497603220869	-0.0646103034342144	0.766844633486465	0.908757742622047
Merged-chr4-19893987-4	chr4	19893886	19894086	+	868.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	28580.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	3.94500553426441	4.21004833853299	4.47781085544449	4.9728740435196	4.59548544880001	3.94539153541517	4.09618149665901	4.62419437360616	-0.270128184379197	0.589775531538952	0.820559267534966
Merged-chr11-95835481-4	chr11	95835371	95835571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025659, intron 3 of 7)	intron (NM_025659, intron 3 of 7)	-6824.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	6.95235699732659	7.02057434945739	7.08897540647815	6.89958347224455	6.81150742067295	7.06381578632449	7.07632678997635	7.18476212055834	0.0646882038819751	0.741911051726162	0.898417179766546
Merged-chr7-27577817-4	chr7	27577704	27577904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175107, intron 8 of 9)	MTC|LTR|ERVL-MaLR	-13748.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	5.46537448922976	5.72379995721541	5.91918441468908	5.5144511240205	6.74104368844052	6.4474941698058	6.58341446885996	6.30293704151758	1.35715663543756	4.62420468898333e-08	2.13731341270873e-06
Merged-chr14-27183831-2	chr14	27183731	27183931	+	871.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	39838.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	3.78703491578716	3.17347881755247	3.40082765489951	3.10871107105912	3.53177286670748	3.51706711799353	3.38737814564835	3.15166182249119	0.0664365571780658	0.908116403025894	0.965960244231753
Merged-chr17-45585031-3	chr17	45584941	45585141	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001199116)	TTS (NM_001199116)	7352.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	4.73830642709279	4.75205585557099	4.9736057263257	4.84635539880661	5.35013719125868	5.11308084792552	5.3423835899767	5.28498524110786	0.857793203877246	0.00480893304906759	0.0461874302387778
Merged-chr8-90955391-1	chr8	90955291	90955491	+	674.0	f0_c57.idr	intron (NM_177224, intron 3 of 39)	intron (NM_177224, intron 3 of 39)	23142.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	3.41991168312002	3.59266386647793	3.29172542109894	3.31530452674104	3.57647394665835	3.91321499596186	3.8194996750269	3.6433826205233	1.06516639285402	0.0303104525992922	0.168386893613491
Merged-chr12-40478174-4	chr12	40478083	40478283	+	703.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	32130.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	3.84154355119365	3.69129760638047	3.56974444846431	3.67175340109232	3.96017940194403	3.68753883492245	3.61523714356137	4.21819391231472	0.579728940244148	0.223388726623494	0.531454466136358
Merged-chr7-143470095-2	chr7	143469995	143470195	+	997.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3660.0	NM_008767	18400.0	Mm.271740	NM_008767	ENSMUSG00000000154	Slc22a18	AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A	solute carrier family 22 (organic cation transporter), member 18	protein-coding	4.31067114591863	3.86290934476511	3.94048318330804	3.42862373077563	3.69488278295887	3.73640799541447	3.96956276830544	3.88933003398122	-0.250399956468293	0.622243221362114	0.838289012366954
Merged-chr15-101077763-4	chr15	101077621	101077821	+	878.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23322.0	NM_001214911	668225.0	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	3.71541623716441	4.35007163968573	3.92095565141304	3.65096062567022	3.7930686057244	3.71856455593226	3.80655994530869	3.65727792113875	-0.544750886319671	0.269823958251577	0.581596772155156
Merged-chr16-56726858-3	chr16	56726773	56726973	+	715.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172825, intron 15 of 15)	L1MEf|LINE|L1	-9423.0	NM_001357126	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	3.34503795338855	3.12591478379725	3.23001582283067	3.49544686160171	3.39776924032311	2.99511280071648	3.3325403260866	3.54682938178691	0.0756308525020243	0.895072341618287	0.96073210268323
Merged-chr3-83842655-4	chr3	83842548	83842748	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1040.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	5.41827758529097	5.4015574955024	4.8326444797029	5.38078097203948	5.58527090767002	5.41607200537296	5.11688854131198	5.41541687138195	0.201040016623621	0.523749857697645	0.782645984427275
Merged-chr4-41713463-4	chr4	41713349	41713549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027278)	promoter-TSS (NM_027278)	68.0	NM_027278	69961.0	Mm.425182	NM_027278	ENSMUSG00000036114	Rpp25l	2810432D09Rik|AW987258|Rppl25	ribonuclease P/MRP 25 subunit-like	protein-coding	5.49006284424137	5.87135501389607	5.9455498613247	5.47006018638435	5.50313183947201	5.57871869262829	5.31198344532602	5.67410721828849	-0.304160325377555	0.292401999655997	0.604744361155109
Merged-chr7-19094642-4	chr7	19094562	19094762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001190491)	TTS (NM_001190491)	118.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	6.10526571131427	6.66970591609081	5.77187827519362	5.54098639485893	6.69222082772291	6.52914462521164	6.19447186032408	5.84704916825465	0.402086509589591	0.23203770608623	0.541621692185733
Merged-chr12-104471750-4	chr12	104471661	104471861	+	961.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010351, intron 2 of 2)	intron (NM_010351, intron 2 of 2)	1475.0	NM_010351	14836.0	Mm.129	NM_010351	ENSMUSG00000021095	Gsc	-	goosecoid homeobox	protein-coding	4.93394420905844	4.21824585896448	4.65415321609413	4.94725743618903	4.52132290366449	4.66286905408852	4.63240465745226	4.72723916567309	-0.204002458022538	0.596411031693762	0.824696790137446
Merged-chr10-77891189-4	chr10	77891079	77891279	+	867.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2241.0	NR_015547	75188.0	Mm.348012	NM_029200	ENSMUSG00000096573	1700009J07Rik	4930535B06Rik	RIKEN cDNA 1700009J07 gene	ncRNA	4.30934231045851	3.83084898887036	3.97566687340666	4.46174632397889	4.32801133797743	4.25483420454818	4.33134939643047	4.26458051088649	0.267661330210684	0.536082507809266	0.790213033830861
Merged-chr5-124444791-4	chr5	124444683	124444883	+	862.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310723)	promoter-TSS (NM_001310723)	-716.0	NM_001310723	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	4.65253220725677	4.21168799310599	3.98255695387854	4.13990143078459	4.00320492757975	4.40505789521275	4.12018052330492	4.35890663827138	-0.0950543963906409	0.825808900601419	0.933172369962049
Merged-chr10-44679748-4	chr10	44679656	44679856	+	975.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-221008.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	5.60097734402099	6.41431359793735	5.07499846615654	4.61657559904061	5.78395510943397	5.64522475552819	5.22683816368492	5.03285352276838	-0.281145300992773	0.678339859760398	0.868034533256964
Merged-chr3-137954321-4	chr3	137954213	137954413	+	929.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	27236.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	5.22018583904331	4.84886071406278	4.75088162101191	4.83296520930653	4.82338566901921	4.43187908254813	4.47993136019363	4.74774587578284	-0.579747814050114	0.109692952963717	0.365706543278895
Merged-chr7-24460006-4	chr7	24459908	24460108	+	938.2416380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2475.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	5.0509497436884	5.19675936677424	5.08515299904127	5.07881855290046	4.77300951788356	4.84160036084137	5.49645028711783	5.0141542056987	-0.084763702771855	0.802266565450315	0.923797328515538
Merged-chr4-141978709-3	chr4	141978607	141978807	+	858.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 5 of 31)	intron (NM_177868, intron 5 of 31)	-4285.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	3.42380798085674	3.62096309836299	3.09278100377462	3.18218208850631	3.60639533588808	3.75990554959765	3.57466699790114	3.68713496059108	1.04122847928525	0.0466343392511568	0.222032483850039
Merged-chr11-86819416-4	chr11	86819345	86819545	+	957.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11785.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	4.45825117993268	4.72433633120019	4.65826546493728	4.7686618770759	4.47947202030278	4.498821976698	4.20572851797661	4.49852304679195	-0.536919072478046	0.144461815813395	0.423596146557945
Merged-chr9-21029591-4	chr9	21029490	21029690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010493)	TTS (NM_010493)	217.0	NM_023892	78369.0	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	5.77828714044788	5.94674969343675	5.41461716351551	5.51945552665855	5.39036398747362	5.64912882922333	5.44623221126208	5.38034674400429	-0.360696608419208	0.2087131381865	0.513022375312381
Merged-chr2-84425310-4	chr2	84425190	84425390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018782)	promoter-TSS (NM_018782)	-24.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	6.70639584708763	6.71611523102005	6.63061969724267	6.99481498478213	6.90495666261978	6.56455252479831	6.84016767254395	6.64165954724533	-0.04433362021814	0.837727155298411	0.938459467190736
Merged-chr2-45693869-3	chr2	45693775	45693975	+	998.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2730.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	4.51252201340454	4.70112718137758	4.65869506996542	4.8003356230593	4.09395596236824	3.80345303304122	4.19193863292509	4.05276655573085	-1.54721210062217	0.000160013087122418	0.00301503793333255
Merged-chr13-5844890-3	chr13	5844789	5844989	+	863.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13203.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	3.63065584972275	3.90331824370391	3.63118250977265	2.76160576595331	4.07931051244934	3.80857645678745	3.31030881676386	3.87996837681456	0.671292348296576	0.307003249553312	0.619287657993402
Merged-chr11-70229087-4	chr11	70228983	70229183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007528, exon 2 of 9)	exon (NM_007528, exon 2 of 9)	715.0	NM_007528	12029.0	Mm.12930	NM_007528	ENSMUSG00000000317	Bcl6b	Bazf	B cell CLL/lymphoma 6, member B	protein-coding	5.11937453599712	5.67700407074475	5.3952681014311	5.23221611302972	5.9578763988908	5.84709473060202	5.86997098704032	5.64368817212324	0.793659232343479	0.00477664110388709	0.0459169253093201
Merged-chr8-46739583-4	chr8	46739554	46739754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008391)	promoter-TSS (NM_008391)	-91.0	NM_008391	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	8.13091827843563	8.24940528319743	8.15740120704962	8.18700063359104	8.32976170517599	8.4135508797377	8.4970951431579	8.33730820364449	0.269019193810506	0.0728552048035704	0.290404918111292
Merged-chr5-35631400-4	chr5	35631302	35631502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42639.0	NR_045807	74364.0	Mm.473123	NM_175208	ENSMUSG00000055061	4931431C16Rik	-	RIKEN cDNA 4931431C16 gene	ncRNA	5.47195810068711	5.91360560644808	6.07658377968691	6.36233020713078	5.63101496697732	5.80299543856773	6.29674258943023	5.85442142849265	-0.148485851238265	0.631755943781093	0.843565602967326
Merged-chr1-165194485-4	chr1	165194364	165194564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145512)	promoter-TSS (NM_145512)	-26.0	NR_151712	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	6.7696799855575	6.60806952482409	6.73001081421157	6.56055337533065	6.48867276468769	6.10474842398422	6.40169373343981	6.37632985593639	-0.442035882281707	0.0439953326274145	0.213828116131297
Merged-chr5-81156891-4	chr5	81156776	81156976	+	899.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 2 of 27)	intron (NM_198702, intron 2 of 27)	135283.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	3.76612792904754	3.5249422117916	3.93080548782223	3.90384159315308	3.94337332620799	4.24846372607426	4.47909701310796	4.11933144357216	1.08900087297565	0.017348916619018	0.116256687631809
Merged-chr1-152622016-4	chr1	152621914	152622114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	3203.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.49893760508096	5.16545397496855	5.60555204926021	5.71839472440437	5.46167851476244	5.61814182670968	5.47232175890296	5.43975136766136	-0.0491664208636895	0.864716696952774	0.949259454202437
Merged-chr7-5051675-4	chr7	5051629	5051829	+	976.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026900, intron 1 of 1)	CpG	197.0	NM_026900	68992.0	Mm.41484	NM_026900	ENSMUSG00000055633	Zfp580	1500015O20Rik|AI838225|Znf580	zinc finger protein 580	protein-coding	4.50128812340177	4.3908685729019	4.70112952403428	4.71504734494155	4.6370082169178	4.79678622764779	4.52369640146985	4.62215431846533	0.115711190760182	0.745367873774321	0.899488664316539
Merged-chr19-29419040-3	chr19	29418908	29419108	+	950.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 1 of 5)	intron (NM_021396, intron 1 of 5)	8089.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	4.50452704516286	3.98700164515484	3.91875295230156	4.38907786126227	3.57951138577703	3.87062187893276	4.18465947152165	3.96853434427888	-0.836398683296708	0.0801888131621725	0.306885291255996
Merged-chr16-45757072-4	chr16	45756960	45757160	+	790.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357078, intron 14 of 16)	intron (NM_001357078, intron 14 of 16)	-14105.0	NM_172511	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	4.04081389046345	3.75003581995815	3.85275274206054	3.70523389110478	3.87274324993703	3.68797749472567	4.06579376786181	3.99435993582049	0.227846037768078	0.612638374138378	0.832832725096038
Merged-chr16-36752166-4	chr16	36752071	36752271	+	963.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021301, intron 21 of 21)	intron (NM_021301, intron 21 of 21)	32791.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	4.75251469642954	4.47205094369326	4.44389830321399	4.68860202144358	4.97658729983655	5.00416319378118	5.28907817243762	5.12270638985028	0.998858005277452	0.00290951149036776	0.0312220893069331
Merged-chr13-3776652-4	chr13	3776571	3776771	+	694.62085	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57C2|LTR|ERV1	27647.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	4.18652512120707	4.139610556963	4.39990845171711	4.32433535644216	4.1607452037961	4.05435484879007	4.25770660542103	4.35752544353789	-0.144726638262666	0.714997355621139	0.886010584897636
Merged-chr11-89024430-4	chr11	89024266	89024466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24963.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	8.83582590745428	8.98779859417712	8.86834069512086	8.82617193432209	8.74132449378166	8.94204500566413	8.94563218885498	8.66311689128265	-0.0666272568199243	0.658818572031728	0.85801674422085
Merged-chr14-66219040-4	chr14	66218972	66219172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-5248.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	6.86322954418707	7.00955844914675	6.99230822093079	6.94942140751371	6.90254305606147	6.59524928505256	6.57811963981104	6.87295109361851	-0.282152676709157	0.164273955022277	0.454403405526126
Merged-chr8-83652556-4	chr8	83652428	83652628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018771)	promoter-TSS (NM_018771)	-150.0	NM_018771	67903.0	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	8.07783498544538	8.22788180513658	8.02635196710497	8.03316833942458	8.13117905153861	8.23048966148486	8.04072816059106	8.11198942890411	0.0472541176914183	0.763701052546087	0.907337170455809
Merged-chr8-83693941-4	chr8	83693848	83694048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177262, intron 1 of 21)	intron (NM_177262, intron 1 of 21)	113.0	NM_001199593	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	5.64462650993421	5.64677545927355	6.10407417780413	5.60345916322847	5.52827753726657	5.74044185660202	5.50787716462229	5.90228784137893	-0.135526914000124	0.631146700881694	0.843254641427651
Merged-chr2-52872823-4	chr2	52872724	52872924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	14956.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	5.60682009083365	5.54977354961465	6.23938677423856	5.96815287192384	5.33467022929792	5.4571455241628	5.31743585009276	5.4932802338899	-0.802929834830453	0.00655627203184322	0.0579501935349173
Merged-chr6-120039817-4	chr6	120039714	120039914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1159.0	NM_001185021	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	6.26320152373505	6.14120538340169	5.98459369081362	6.0158694193429	6.27453466537109	6.16044573741671	5.95409370791694	5.78758067111077	-0.0517636730137948	0.835613742718039	0.93749055218661
Merged-chr9-107769703-4	chr9	107769598	107769798	+	850.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153191, intron 1 of 23)	intron (NR_153191, intron 1 of 23)	1304.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	4.29080536406294	4.39227436002166	3.99995390036553	4.24321508311327	4.30840844313936	4.54468365185923	4.13618393594943	4.15138411961837	0.127761138080856	0.75153563144492	0.902195066080063
Merged-chr13-93192393-4	chr13	93192310	93192510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133905)	promoter-TSS (NM_133905)	7.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	8.48624520939466	8.61168662845682	8.28373032785973	8.2778724141819	8.2908597447863	8.31708910773635	8.22774364337161	8.07532105588035	-0.238596431347729	0.151382023328265	0.43497582102707
Merged-chr19-21599153-3	chr19	21599076	21599276	+	950.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025423, intron 2 of 3)	intron (NM_025423, intron 2 of 3)	53615.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	4.40023024406575	4.30935461852188	4.32194516258872	4.44316033076486	3.91432193288632	4.0119410807699	3.92970988938393	4.04783588847781	-1.04488137786727	0.0102595243883413	0.0804261600974838
Merged-chr9-106687498-4	chr9	106687332	106687532	+	890.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030730)	TTS (NM_030730)	-1480.0	NM_001286498	21767.0	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	4.05377178686063	3.88536277167433	3.85405511208775	3.37368574431496	3.89556452064862	3.92248157208423	4.16682210402471	4.48020373424071	0.89685929108121	0.0668032255242495	0.275603477052719
Merged-chr19-43521393-4	chr19	43521277	43521477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 1 of 8)	(A)n|Simple_repeat|Simple_repeat	3228.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	5.46665567670172	5.57024073147503	5.26329863183485	5.81504426668025	6.22688620009133	5.9514445266532	6.1077390806484	6.30820603928207	0.941120199965204	0.000629068684414196	0.00927241248455541
Merged-chr5-64884410-4	chr5	64884305	64884505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48294.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	7.40100264251712	7.46277862322236	7.64633254392864	7.52213822408766	7.39366690988378	7.60900462248569	7.31481486983621	7.55619905099375	-0.0550945473102758	0.757559687692316	0.90479159536558
Merged-chr13-58458996-4	chr13	58458904	58459104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55661.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	7.2907711615299	6.68377005814499	7.07144344320596	7.02381959991638	6.78732025247336	6.73025983742894	6.48350625974316	6.9074163266204	-0.411995222063763	0.0652266614208812	0.271824855578273
Merged-chr8-94386386-4	chr8	94386292	94386492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022331)	promoter-TSS (NM_022331)	-37.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	8.20761852710123	8.56517653292791	8.19687581866793	7.99260682990332	8.38778458698044	8.36240450821676	8.52751539381023	8.16075866378594	0.143558674001752	0.441052903205946	0.728379224700288
Merged-chr1-195131114-4	chr1	195131032	195131232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355061, exon 1 of 9)	5' UTR (NM_001355061, exon 1 of 9)	438.0	NM_001355060	12946.0	Mm.301652	NM_013499	ENSMUSG00000016481	Cr1l	Crry|Mcp|mCRY	complement component (3b/4b) receptor 1-like	protein-coding	6.20587129883967	6.10156705180979	6.38838000150695	6.38649684507611	6.24014342198418	6.07727309869704	6.21347287423702	6.16291078704741	-0.157726609063589	0.489906158203612	0.761966459176932
Merged-chr7-110164957-4	chr7	110164858	110165058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42899.0	NM_009516	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	6.76415122707128	7.12984224774047	6.14382309645434	6.43372884201516	7.04722106587989	6.99850027500456	7.08008393918414	6.76052100329781	0.43496019584997	0.0946805604080644	0.336694025244085
Merged-chr3-141492167-3	chr3	141492059	141492259	+	828.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293561, intron 1 of 16)	intron (NM_001293561, intron 1 of 16)	26595.0	NM_009472	22253.0	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	3.43384373892522	3.21162432096478	3.32415501329941	3.40898748285701	3.55782480324126	3.10794670014209	3.4205530567486	3.37860213256725	0.120621621117437	0.822208817603624	0.932100707060533
Merged-chr10-57448118-3	chr10	57447987	57448187	+	766.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38266.0	NR_045353	74928.0	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA	3.57504034778102	3.76876784590147	3.67771397288539	3.37249462856794	3.73890639401864	3.57996862418539	3.3931870730793	3.2768449066935	-0.267442514277002	0.611364499249098	0.832274675669425
Merged-chr11-69432270-4	chr11	69432174	69432374	+	939.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 73 of 85)	intron (NM_001081330, intron 73 of 85)	-18599.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	4.50117392349393	4.72673263712847	4.05514413270449	4.31513505866566	4.85351515300101	4.75553817129894	4.43891289622834	4.65696159480251	0.59265398307903	0.128807349786904	0.399323987949653
Merged-chr13-101801477-4	chr13	101801438	101801638	+	950.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33321.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.31773884554695	4.18532237204784	4.74954429947508	4.69337194721328	4.25216543224756	4.39936720128891	4.29951261276073	4.71270769582602	-0.209304373430952	0.607419435263578	0.829999364685165
Merged-chr11-32489536-4	chr11	32489430	32489630	+	966.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361561, intron 1 of 1)	B4A|SINE|B4	34160.0	NM_173784	327900.0	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	5.37852519165157	5.48498864250156	5.20085949614521	5.10145531936034	5.6865353355312	4.97247801870567	5.07642233243188	4.98978719041797	-0.101607521153805	0.76757019326685	0.909027746453384
Merged-chr5-20881593-4	chr5	20881510	20881710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177601)	promoter-TSS (NM_177601)	514.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	5.10325254085244	5.06906883542681	5.00164534574458	4.85813475298304	5.25688438865424	5.30933253160384	5.04622823722605	5.19533137406163	0.396309163776753	0.190104516296396	0.489188726563073
Merged-chr7-25072864-2	chr7	25072764	25072964	+	676.916626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008168)	promoter-TSS (NM_008168)	-495.0	NM_001360067	14809.0	Mm.2879	NM_008168	ENSMUSG00000003378	Grik5	GluK5|GluRgamma2|KA2	glutamate receptor, ionotropic, kainate 5 (gamma 2)	protein-coding	3.12724973728944	2.91240080265461	3.0164486490626	2.93468449295539	2.99814851463293	3.00197447539403	2.75272675350139	2.89325098003442	-0.337519247024338	0.575086349368374	0.81272502373833
Merged-chr7-29953975-4	chr7	29953811	29954011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178384, exon 1 of 6)	5' UTR (NM_178384, exon 1 of 6)	154.0	NM_178384	72723.0	Mm.371648	NM_178384	ENSMUSG00000059975	Zfp74	2810054M15Rik|KRAB8|Zfp66|Znf569|mszf21|mszf77|zfp-74	zinc finger protein 74	protein-coding	5.67585937822085	5.99524147281838	5.84566982187739	5.74633583544101	5.2587036991849	5.59912650974832	5.85988286265024	5.79556993831429	-0.301680981394191	0.285717631064162	0.597437981101283
Merged-chr5-18013443-4	chr5	18013343	18013543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	50873.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	6.81438322363875	6.5336294817933	6.78771529719605	7.10414315952945	6.76725048084038	6.79927279457028	6.6356451049798	6.75441319030297	-0.14162776454949	0.51970947133487	0.780280082524181
Merged-chr11-52046952-4	chr11	52046862	52047062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	42741.0	NM_001166653	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	5.37143608029381	5.33197002931212	5.31034952679392	5.35744058155427	5.76474446867605	5.16972019160574	5.77414596370196	5.68760083820823	0.495871760123495	0.0847979373915448	0.316874862746365
Merged-chr2-160047864-4	chr2	160047773	160047973	+	869.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	31220.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	4.51035520881805	4.50713666328199	4.15948928358698	4.06418907004548	4.29249077779819	4.64231327367505	4.41128790918097	4.20649396822912	0.187948432753505	0.644053004468531	0.850082962136934
Merged-chr11-59902375-4	chr11	59902311	59902511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-19088.0	NR_130986	69854.0	Mm.57859	NR_130986	ENSMUSG00000085551	1810063I02Rik	-	RIKEN cDNA 1810063I02 gene	ncRNA	5.83215665953187	5.49609361071116	5.65765468225689	5.46072456215845	5.00701292987836	5.09142874686109	5.18368611230586	5.42133078429368	-0.769986525363146	0.010020230374253	0.0790282523888037
Merged-chr19-10376860-3	chr19	10376759	10376959	+	746.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12231.0	NM_018801	54525.0	Mm.182654	NM_018801	ENSMUSG00000024743	Syt7	AI851541|B230112P13Rik	synaptotagmin VII	protein-coding	3.25209641078511	3.08861730697865	3.06467289333743	3.13047383870294	3.36511844385705	3.36527940715551	3.3505416304342	3.46484247983676	0.926044423492923	0.0775169793717583	0.301128694793559
Merged-chr10-21890533-4	chr10	21890447	21890647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 1 of 13)	ID_B1|SINE|B4	8363.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	6.92209265591272	6.79829496874385	7.2693230294326	7.29079630601787	6.71997204472993	6.93047128826706	7.01403689409028	7.04462232142583	-0.233062193399532	0.283980490010023	0.596003163745346
Merged-chr2-4461038-4	chr2	4460951	4461151	+	888.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	RSINE1|SINE|B4	60075.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	3.81375839085573	4.21958578165917	4.20011641182385	3.86031008894373	5.45929243350801	4.96726499594396	5.24434113738663	5.24317489764515	2.63929663453248	1.1358216371762e-12	1.19595633598469e-10
Merged-chr4-83288798-3	chr4	83288676	83288876	+	719.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 2 of 19)	ORR1D2|LTR|ERVL-MaLR	35413.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	3.02977947633296	3.01280208677627	2.97327266673792	2.95173235882014	2.71481567727627	2.89170496078401	2.84179859072945	2.78445004459263	-0.852375295848439	0.164572386252224	0.454830996687285
Merged-chr1-136675932-4	chr1	136675827	136676027	+	967.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7469.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	4.69104914130323	4.62429551914562	4.69180751892028	4.63426120725614	4.48772182882756	4.82623641713787	4.97832546572879	4.90434093718108	0.303712542495235	0.382388128928375	0.684468240607269
Merged-chr13-3406828-4	chr13	3406739	3406939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71464.0	NR_015522	76937.0	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	6.41500636874687	6.3687979710343	5.95804253697719	5.93728549853498	6.37286922818978	6.57408323397781	6.29729346441489	6.09006391094194	0.250981397038822	0.323169208244814	0.63466673307741
Merged-chr11-96789166-4	chr11	96789097	96789297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007622)	promoter-TSS (NM_007622)	61.0	NM_007622	12412.0	Mm.29055	NM_007622	ENSMUSG00000018666	Cbx1	Cbx|Cbx-rs2|E430007M08Rik|HP1B|Hp1beta|M31|MOD1	chromobox 1	protein-coding	6.59062958306842	6.54348773052723	6.7906751052009	6.14022697960683	6.23016520348475	6.65513609893778	6.46255510770588	6.4574852536844	-0.100798570373952	0.684747502835361	0.870914954532591
Merged-chr3-97265184-4	chr3	97265100	97265300	+	937.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-37836.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	3.68658629715322	3.88797743832604	3.74618319574407	3.88193922435243	4.56573833955789	3.74499653040616	4.28160326090987	3.85495002778337	0.949667259349466	0.0491797956169852	0.229319926119973
Merged-chr6-106750513-4	chr6	106750413	106750613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1476.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	6.54774187637716	6.32808545404655	6.56495287631132	6.88948535296837	6.48524782828022	6.37554162840893	6.76264804231803	6.4079141291792	-0.139579392644214	0.557733415885524	0.802816324871987
Merged-chr11-69621979-4	chr11	69621863	69622063	+	925.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356469)	promoter-TSS (NM_001356469)	-89.0	NM_026991	69215.0	Mm.340410	NM_026991	ENSMUSG00000069835	Sat2	2610016A03Rik|SSAT-2|SSAT2	spermidine/spermine N1-acetyl transferase 2	protein-coding	4.0776199387617	4.46652963989391	4.2316630341939	4.23259512685123	4.73877316559708	4.4532889901948	4.47218676098695	4.40895705725297	0.635329592771092	0.0970785263704177	0.341353541181752
Merged-chr4-35980800-1	chr4	35980700	35980900	+	903.0	f0_balb.idr	intron (NM_001166000, intron 7 of 8)	intron (NM_001166000, intron 7 of 8)	-135596.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	3.88774741699337	3.39980385127089	4.13772435594771	4.24942707477642	3.54552576207184	3.43706991719076	3.44344248252895	3.57577029222879	-1.4189135413522	0.00891987427104901	0.0726938093358138
Merged-chr18-53862022-4	chr18	53861896	53862096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152809)	promoter-TSS (NM_152809)	-117.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	7.74497507716985	7.85364542130511	7.71382464282369	7.86136104580106	7.77767202494341	7.97078577572864	7.92773731985526	7.49405835349212	0.00677549311017952	0.969911147872201	0.989129829709373
Merged-chr6-87153131-4	chr6	87153039	87153239	+	913.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054041, intron 17 of 17)	ORR1F|LTR|ERVL-MaLR	48393.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	4.05309458290732	4.02668368072697	4.32273689201083	4.281744231481	4.3218035656651	4.01595849387132	3.98712699718804	4.39745062894843	0.0415500419824168	0.921087626480129	0.970769099300258
Merged-chr4-134923032-2	chr4	134922926	134923126	+	737.549988	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_023665)	promoter-TSS (NM_023665)	-599.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	3.86541062376289	4.15244346417082	4.2988668778953	3.98725752982195	4.12747550736059	4.24917213746429	4.23798314665031	4.16750051968301	0.292514121415924	0.474876245769388	0.75193151536302
Merged-chr9-16216463-4	chr9	16216355	16216555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	161776.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	6.96784411066054	6.85403023752452	7.0893716980978	7.14168458191851	6.90276538511335	7.09400744955472	6.78718999055789	6.63398211816252	-0.221271215439713	0.283701900648014	0.595769806349757
Merged-chr19-5273134-4	chr19	5273056	5273256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153129)	promoter-TSS (NM_153129)	-37.0	NM_153129	107975.0	Mm.234923	NM_153129	ENSMUSG00000024855	Pacs1	AI325977	phosphofurin acidic cluster sorting protein 1	protein-coding	6.56393975813484	6.72979656966936	6.0987165973351	6.22140034093402	6.58089007230234	6.48314563052724	6.53153270030297	6.39404032599248	0.116853960459918	0.627838086417855	0.841345115466837
Merged-chr9-58552252-4	chr9	58552142	58552342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11302.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	5.73287779577703	6.31678842443238	5.73388068703614	5.80955172365163	6.1588052484757	6.03457974038817	6.1223912864733	5.50114256021684	0.0972540375331378	0.739133542890948	0.897175752194117
Merged-chr11-76846320-5	chr11	76846234	76846434	+	703.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007754, exon 1 of 21)	exon (NM_007754, exon 1 of 21)	674.0	NM_007754	12874.0	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	3.20765203265704	3.03493367972636	3.36291339352639	2.6389680798502	3.03701518785173	3.14462785950045	2.89118731003589	3.09179545539341	-0.162534602325999	0.801359067841304	0.923365533732052
Merged-chr3-126831618-3	chr3	126831514	126831714	+	848.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 14 of 18)	intron (NM_001025438, intron 14 of 18)	111772.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.68185349600515	3.30050109569283	3.90036797102427	3.67237146701918	3.3042322989502	3.27459435989879	3.2205919875125	3.5288235369412	-1.08155994791332	0.0478572663073116	0.225643505041096
Merged-chr2-166657326-3	chr2	166657229	166657429	+	947.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	56503.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.10012812742544	4.16519606533544	4.10074221513399	3.98338165168428	4.54319790561963	4.07476332216563	3.98689779867922	3.84052364698814	0.18482070599977	0.678940297624465	0.868233840147542
Merged-chr19-46876004-4	chr19	46875907	46876107	+	843.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033569, intron 6 of 7)	intron (NM_033569, intron 6 of 7)	86344.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	3.91750682766684	3.96409916633697	3.81744862533752	3.86862002940175	3.9830771694423	3.93690850617291	3.80225989981553	3.86650898855729	0.0297916947458043	0.944868663700367	0.980163337636506
Merged-chr18-32370447-3	chr18	32370365	32370565	+	797.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045403, intron 2 of 2)	Lx9|LINE|L1	-6752.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	3.42386860067312	3.69146054191102	3.54368279589406	4.0043054743423	3.7610196336307	3.59970770608417	3.68929242136814	3.54185814798427	-0.150832400383803	0.768632029340203	0.90939721515425
Merged-chr5-111228484-3	chr5	111228343	111228543	+	782.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 8 of 22)	intron (NM_001267622, intron 8 of 22)	-102254.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	3.4409481960092	3.1586471072531	3.76333480389361	3.91020429282533	2.98154983259748	3.04933723831613	3.07229493832401	2.9365098093166	-2.39320070224336	0.00024189898038896	0.00424793347128757
Merged-chr7-104647287-4	chr7	104647179	104647379	+	909.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_147049)	promoter-TSS (NM_147049)	26.0	NM_147049	259051.0	Mm.223432	NM_147049	ENSMUSG00000070421	Olfr658	MOR34-5	olfactory receptor 658	protein-coding	5.16153570043414	5.15667670614344	5.16241837419509	5.06743822237159	4.69520773992414	4.90993740728427	5.07493746670313	5.03079899096873	-0.403351374393139	0.201637162108193	0.50415510516587
Merged-chr9-56166365-3	chr9	56166290	56166490	+	768.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5320.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	3.88076409292494	3.75076493026103	3.58962891516481	3.29299987305144	3.48410907765105	4.04835808826683	3.27383292163256	3.213227123232	-0.303276162682049	0.604490081783116	0.828485859893348
Merged-chr6-136661231-11	chr6	136661121	136661321	+	884.7045289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	672.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	3.71535394870763	3.62491890630364	3.81708303639434	3.91881504167155	3.71671454349091	3.53660072928343	3.64796017853867	3.99543279513856	-0.135336241562904	0.776431336393262	0.912932991254018
Merged-chr9-10668802-4	chr9	10668688	10668888	+	845.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033359, intron 1 of 20)	intron (NM_001033359, intron 1 of 20)	235938.0	NM_001033359	244682.0	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding	4.35720769345319	3.86071159874751	4.16888514276495	5.03741929276262	4.10086713813268	4.24473978336418	4.64570692408364	4.51977809619082	-0.124578887970125	0.802712760590267	0.923936032101707
Merged-chr10-119063223-3	chr10	119063137	119063337	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12738.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	6.3049672721079	6.11181388001105	6.46759648184306	6.62649570030619	6.38592907256389	6.40447334185634	6.70469653302926	6.59085761038706	0.17593778357305	0.457479068882902	0.740570903889381
Merged-chr2-61712782-3	chr2	61712669	61712869	+	786.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021526, intron 1 of 11)	ORR1B2|LTR|ERVL-MaLR	1075.0	NM_021526	59029.0	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	3.58051268801086	3.49412844598091	3.77824404114924	3.28200501354218	3.76779254439777	3.39654466027045	3.51280970854939	3.63114905190014	0.185086566917247	0.719668181440156	0.888022825078143
Merged-chr10-68735888-4	chr10	68735797	68735997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	12151.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	7.35634299634466	7.17644466854252	8.11745056299803	8.20098672403049	7.76109884752846	7.57861162209593	8.04272941286389	7.88511789273179	0.0389558412195152	0.881869868152282	0.955502432033542
Merged-chr6-125127993-3	chr6	125127895	125128095	+	927.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346610, intron 37 of 38)	intron (NM_001346610, intron 37 of 38)	-3888.0	NM_138747	110109.0	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	3.95513529234846	3.88175533277019	3.84987921970724	3.10709818464794	4.61291114719263	4.08322662155001	3.65974018101499	4.4527964444891	1.33871271355593	0.0156506887559886	0.108060954017122
Merged-chr11-59449961-4	chr11	59449834	59450034	+	968.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037992)	promoter-TSS (NR_037992)	100.0	NM_001356454	67826.0	Mm.26680	NM_144521	ENSMUSG00000009894	Snap47	1110031B06Rik|SNAP-47	synaptosomal-associated protein, 47	protein-coding	4.74115635643496	5.07380350892134	5.02079874232714	4.86551081374062	4.77804035602001	4.70885955444245	4.64017092209216	4.73882896884681	-0.430149651411021	0.196782377383177	0.4979362662321
Merged-chr17-34313102-3	chr17	34312958	34313158	+	881.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010382, intron 2 of 5)	MTC|LTR|ERVL-MaLR	7191.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	2.8982751978211	2.74412343476916	2.61907086310597	2.46597412835456	3.34386385503579	3.00995560082866	2.88796591124131	3.07377472698348	1.88769066124547	0.00392915275985343	0.0395064752948267
Merged-chr6-48435849-3	chr6	48435745	48435945	+	697.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001085415)	TTS (NM_001085415)	9245.0	NM_001085415	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	3.39581756725183	3.37684323853135	3.50952479135537	3.06092570272514	3.58152513306072	3.25001331137297	3.54756813713895	3.91963123175346	0.872537561664912	0.10978086953478	0.365876223508832
Merged-chr8-10683302-4	chr8	10683203	10683403	+	974.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	199151.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	5.25963380585106	5.36125352274653	5.43117960127984	5.77606352416066	4.99732054657783	4.92595400242563	5.10743681692576	4.98688523008453	-0.898767566690535	0.00410350202585485	0.0408565073014858
Merged-chr9-65538367-4	chr9	65538287	65538487	+	957.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41700.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	4.85549483576796	5.02531482156405	5.74181411836911	5.49446594638087	5.83530860746487	5.04058781053729	5.66782871850534	5.35561935901682	0.32452584405268	0.374085269635922	0.677446009602221
Merged-chr13-35452622-3	chr13	35452518	35452718	+	896.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-207244.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	3.30059464322002	3.18701192309433	3.65650023171123	3.41175203507747	3.01280994237159	3.22409414593334	3.45112205144025	3.35645507413421	-0.477621881260594	0.397379224127706	0.69576798253969
Merged-chr15-59524234-4	chr15	59524145	59524345	+	936.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-124409.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	4.87380892736051	4.40457007145672	4.72256080769158	5.29828090908993	5.23496702828989	4.81667546175436	4.61814890571342	4.90664813817297	0.0748856415174114	0.851926366677234	0.944203374730843
Merged-chr5-110396769-2	chr5	110396669	110396869	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142642, intron 4 of 18)	intron (NM_001142642, intron 4 of 18)	-9642.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	2.47718840891626	2.41639752628038	2.61230963587609	2.75412450098354	2.52942215177731	2.71666463355879	2.66512743142032	2.67348761087414	0.322440495547406	0.639569941243622	0.847607151813091
Merged-chr17-34681232-1	chr17	34681132	34681332	+	614.0	f1_balb.idr	intron (NM_031176, intron 5 of 32)	intron (NM_031176, intron 5 of 32)	10697.0	NM_031176	81877.0	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding	3.24991288839572	3.69952091495604	3.19017309771069	3.22291163314916	2.96531429829293	3.36389822349814	3.17876164529887	3.18857772417927	-0.677155940207702	0.245589067211067	0.556700748185878
Merged-chr13-85359368-4	chr13	85359262	85359462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69876.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	6.82907049307587	6.21988561300652	6.36636232351544	6.88696292860407	6.63656386900455	6.90908996338828	6.84770340002134	6.82541596491792	0.26227496522292	0.282082069392267	0.594254538219845
Merged-chr12-41313605-4	chr12	41313518	41313718	+	927.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	172439.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	5.12123475090706	4.83117726925297	4.96718978306923	4.62111758173946	4.78693323802761	4.7632475546008	4.84081543455391	4.78727898893006	-0.173925823018985	0.611409280805259	0.832286272412929
Merged-chr17-25131273-4	chr17	25131152	25131352	+	911.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-2139.0	NM_011930	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	4.39772324734264	4.47364434311978	4.25431304549704	4.13173002782723	5.1714059104141	4.66150038645208	4.18494589094569	4.81793589717025	0.999994654833343	0.0156067612812861	0.107873575001776
Merged-chr11-75679941-4	chr11	75679836	75680036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277221, intron 1 of 1)	intron (NM_001277221, intron 1 of 1)	677.0	NM_001277221	12928.0	Mm.280125	NM_133656	ENSMUSG00000017776	Crk	Crk-I|Crk-II|Crk-III|Crk3|CrkIII|Crko|c-Crk|p38	v-crk avian sarcoma virus CT10 oncogene homolog	protein-coding	5.75755547858616	6.08986805090432	6.16484321848854	5.97226561016284	6.01904011856444	6.03766490660554	6.0942955407453	6.30586649570682	0.174868013179873	0.47166092763535	0.750014008853512
Merged-chr7-82811228-4	chr7	82811129	82811329	+	989.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55585.0	NR_046004	77800.0	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	4.73135316598976	4.86075997892934	4.3477810289507	4.89821516758488	5.39281090017599	4.86932690208769	5.0692296760098	5.49171284771058	0.954549614361472	0.00815530517094954	0.0680485474140521
Merged-chr13-34279144-4	chr13	34279086	34279286	+	836.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	65996.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	3.95482188012217	3.79950985604441	3.69935654220591	3.97544050489441	4.03970705953614	3.87266427216797	3.89167626643953	3.80558162232774	0.115510390729576	0.794388805563118	0.920533997414362
Merged-chr16-55853086-4	chr16	55852985	55853185	+	944.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134457, intron 4 of 5)	intron (NM_001134457, intron 4 of 5)	-14444.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	4.48315843707592	4.80604771160694	4.61530234981036	4.92053184721841	5.10948273430568	4.94400798090376	4.63479879301726	4.38569672759199	0.161991509241627	0.673243733703161	0.865685375148687
Merged-chr5-30840900-4	chr5	30840816	30841016	+	948.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-20891.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	4.32069383265328	4.87085145045749	4.75623867020349	4.82470105306625	4.58669638410264	4.92801408920336	4.87201917395997	4.51013861082068	0.0228458123912697	0.950742644910482	0.982375640136502
Merged-chr3-96239618-3	chr3	96239516	96239716	+	787.166626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178216)	promoter-TSS (NM_178216)	-474.0	NM_178216	15077.0	Mm.422680	NM_178216	ENSMUSG00000093769	Hist2h3c1	BE691662|H3-615|H3f2|Hist2h3ca1	histone cluster 2, H3c1	protein-coding	4.27164625770659	4.2771995365024	3.91796494729103	3.76159451254363	3.82400517069103	3.81647941207562	4.13172992274668	3.75315712890601	-0.489243886252544	0.296653750094666	0.608580271057507
Merged-chr3-104865071-4	chr3	104864978	104865178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355044)	promoter-TSS (NM_001355044)	572.0	NM_001253702	229681.0	Mm.206379	NM_153091	ENSMUSG00000045576	St7l	St7r	suppression of tumorigenicity 7-like	protein-coding	5.49635387915872	5.6969500892782	6.2022570891661	5.20059846132207	5.6490631095684	5.73185613599107	5.73329323123764	5.80557460192101	0.0693859000206893	0.827002825193521	0.933642628661036
Merged-chr5-136979913-3	chr5	136979813	136980013	+	717.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6991.0	NM_001310747	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	2.94596156038554	2.73725759666272	2.8896725571943	2.7843033146804	2.67546220871847	2.87361324670595	2.75838956389381	2.70087668538533	-0.415015512023873	0.509039038786351	0.773874003577432
Merged-chr17-37271004-4	chr17	37270869	37271069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013819, intron 2 of 7)	intron (NM_013819, intron 2 of 7)	735.0	NM_013819	14991.0	Mm.14437	NM_013819	ENSMUSG00000016206	H2-M3	H-2M3|Hmt|M3a|MuprM3|MuprM301|MuprM302|R4B2	histocompatibility 2, M region locus 3	protein-coding	6.70927773877635	6.36605526731028	6.63762806993963	6.33341572992246	6.61853857156328	6.58444966820789	6.42771425250654	6.57145750357984	0.0698937866486069	0.751237244415487	0.902050378109251
Merged-chr8-104108073-5	chr8	104107989	104108189	+	783.82666	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 1 of 11)	(GA)n|Simple_repeat|Simple_repeat	-2216.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	3.641229993589	3.63081973060265	3.58967621654153	3.35182982047796	3.84177204225531	3.40600003536362	3.72354633707281	3.3560305508644	0.183758154381131	0.722007377690478	0.889095345567057
Merged-chr13-34875499-4	chr13	34875376	34875576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013830)	promoter-TSS (NM_013830)	-18.0	NM_013830	19134.0	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	6.79422989911657	6.57379292588223	6.31164929606	6.51010025321593	6.64671170042309	6.54647867143798	6.5430749228912	6.72187121824891	0.0908183225318813	0.674461509001519	0.866144208984521
Merged-chr10-86124337-4	chr10	86124227	86124427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013722, intron 7 of 13)	intron (NM_013722, intron 7 of 13)	28473.0	NR_038024	78170.0	Mm.444790	NR_038024	ENSMUSG00000112493	4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	6.15318345243676	5.64194972394275	6.40399218818443	6.12240772078323	6.60275951335945	6.37391811308112	6.96648976097666	6.63673958444397	0.826637449530695	0.00159673369261062	0.019629344992458
Merged-chr15-80012831-4	chr15	80012724	80012924	+	894.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011057, intron 1 of 6)	CpG	1984.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	3.13300840206625	2.86356717583122	3.13345997092225	3.07489701915742	2.79510108654213	2.93942808790604	2.60619484703848	3.13163372961767	-0.758316087022036	0.244612854743009	0.555806001588614
Merged-chr2-84479255-4	chr2	84479163	84479363	+	930.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR18-int|LTR|ERVK	-2488.0	NM_001177320	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	4.52947722963938	4.37094209637372	4.06106130003699	4.40035073801406	4.6067859883452	4.57907127996777	4.42873675280425	4.60346666689051	0.461154465077961	0.217916554356769	0.524812112221229
Merged-chr7-101074694-4	chr7	101074511	101074711	+	976.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-34164.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	5.18934569768614	5.06029800645629	4.19462725092431	4.13749966241093	4.87419504565432	5.12891905656245	4.60858127100408	4.35331148249885	0.0796434279770388	0.866114646901944	0.949861736890724
Merged-chr1-9631182-4	chr1	9631090	9631290	+	967.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015470)	promoter-TSS (NR_015470)	-98.0	NR_015470	72481.0	Mm.279818	NR_015470	ENSMUSG00000079671	2610203C22Rik	2310007M24Rik	RIKEN cDNA 2610203C22 gene	ncRNA	5.02750787253727	4.98670983750712	4.95547469947092	5.27707018781629	5.29361775196914	5.30391316110849	5.22892811600936	5.19067793332624	0.312689917021364	0.303901526888407	0.616613174721073
Merged-chr3-95645455-4	chr3	95645359	95645559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13262.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	7.07572348756879	7.1370989548387	6.30204763018035	6.59827819652784	6.78289080650443	6.98109662269807	6.6397140161258	6.39632525078737	-0.145769152381021	0.582693893621221	0.816753680590474
Merged-chr15-26359034-4	chr15	26358928	26359128	+	916.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	49980.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	4.13151687001189	3.83767671966982	3.83867447436083	4.07403348973793	4.12054678084924	4.16527809267502	4.23691178991565	3.66125417118459	0.22333102232003	0.620232235564425	0.837084318577183
Merged-chr4-150509273-4	chr4	150509179	150509379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 9 of 22)	intron (NM_001085492, intron 9 of 22)	142895.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	6.13680546743606	6.27339132819403	6.64533949357332	6.96886022597275	6.10985385222448	5.83028721778127	6.45910316226532	6.58168350110801	-0.419534362564694	0.154932963322551	0.440379098967171
Merged-chr13-24761521-4	chr13	24761428	24761628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020567, intron 1 of 6)	GC_rich|Low_complexity|Low_complexity	409.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	6.9374679484796	6.87441183741792	6.97744653068572	6.77370667566027	7.26869627487652	7.20339404833144	7.05142934029254	6.95973828314629	0.343771296220884	0.0762534764375975	0.298263009064823
Merged-chr6-53713327-2	chr6	53713227	53713427	+	711.166626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	107498.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	3.66182836309072	3.90391650619095	3.8066370658088	3.76586217732598	3.41239702547907	3.35866459016548	3.48660520331863	3.37713465176662	-1.25438780427299	0.0123358495724748	0.0916010224205484
Merged-chr10-67009993-4	chr10	67009894	67010094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001204915, exon 9 of 9)	3' UTR (NM_001204915, exon 9 of 9)	4919.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	5.18232368811852	5.56724662054583	5.24849672736218	5.48886472072849	5.14529864288917	5.5990448374294	5.31403318028819	5.1457678467068	-0.155440450689306	0.609150652050406	0.83089280248568
Merged-chr3-88396033-4	chr3	88395924	88396124	+	950.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025928, exon 4 of 5)	exon (NM_025928, exon 4 of 5)	-11558.0	NM_007541	12096.0	Mm.389459	NM_007541	ENSMUSG00000074483	Bglap	BGP|Bglap1|OC|OG1|mOC-A	bone gamma carboxyglutamate protein	protein-coding	4.58954789887439	4.65389480282551	4.59026608325801	4.58408423460736	5.38731692995433	5.1471855449926	5.0758253809802	4.79371254798474	1.05295473407583	0.00166712304767619	0.0202844703265886
Merged-chr5-135184664-4	chr5	135184563	135184763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-2660.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	5.50737997372068	5.56186384992796	5.3350804912795	5.2846707885262	5.73734388657119	5.34828710467088	5.33906557033457	5.53114111550341	0.162536353772102	0.571378637324757	0.810582373861739
Merged-chr3-96557280-2	chr3	96557180	96557380	+	746.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023719)	promoter-TSS (NM_023719)	-677.0	NM_023719	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	2.53520763223513	2.39008650066944	2.39101021889248	2.07121703466112	2.40896066717354	2.6458665048932	2.6551543838404	2.99218012660474	1.84577617808979	0.0175041399683497	0.116922595608781
Merged-chr15-64095412-4	chr15	64095293	64095493	+	980.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 26 of 28)	intron (NM_001276461, intron 26 of 28)	-34945.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	5.54064933709513	5.00485700827976	5.18257951200284	5.25439318348734	5.15184663244955	4.81857290622225	5.27793137134138	5.35739186615448	-0.161849393982411	0.61452965662249	0.833951810808797
Merged-chr8-123041681-4	chr8	123041578	123041778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045268)	promoter-TSS (NR_045268)	606.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	5.08908451880935	5.30061495147995	4.6972792554008	4.7588095992904	5.40540458636878	5.39229190816077	4.99597853556276	5.51343338318294	0.679565157314755	0.0425908990719024	0.209623676188559
Merged-chr6-128438694-4	chr6	128438602	128438802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028592)	promoter-TSS (NR_028592)	-46.0	NM_010219	14228.0	Mm.12758	NM_010219	ENSMUSG00000030357	Fkbp4	AL022792|AW208983|FKBP-4|FKBP-52|FKBP52|FKPB52|p59	FK506 binding protein 4	protein-coding	7.98821114754225	7.68078189953592	7.79224191556601	8.13939646915886	7.99281466095973	7.8960671483179	8.28004421436187	7.8334708312704	0.121553578591985	0.527979215851985	0.784657061262147
Merged-chr7-81789483-4	chr7	81789394	81789594	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026077)	promoter-TSS (NM_026077)	-41.0	NM_026077	67290.0	Mm.248391	NM_026077	ENSMUSG00000025102	3110040N11Rik	AI851475	RIKEN cDNA 3110040N11 gene	protein-coding	5.67934516358172	5.14284859648819	5.36112103668345	5.68495700167506	5.38664950248745	5.19729207196879	5.39318859676903	5.72235830144862	-0.0997690770855813	0.74647839909887	0.90014206765363
Merged-chr6-100438816-4	chr6	100438711	100438911	+	872.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-88589.0	NR_040525	73395.0	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	4.51029037647343	4.24459186594252	4.4274006517097	4.60575882780976	4.4087816350126	4.51255629956327	4.60501466760558	4.54788254391045	0.116678397634848	0.752207997921927	0.902363969099289
Merged-chr1-151661137-4	chr1	151661025	151661225	+	798.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	89752.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	4.0156129894426	3.8633310141869	4.01618638400145	4.3501578240842	4.30886230183061	4.28365673848735	4.09523229608875	4.01386732466504	0.233503323276438	0.591303666582702	0.821525680896513
Merged-chr8-108393067-4	chr8	108392963	108393163	+	807.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	191614.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	4.11786271017146	3.9531412721054	4.02076498879886	3.87673338104957	4.16851705584615	4.29083663047611	4.42663579840036	4.16212169029466	0.719312158103731	0.0743708016974501	0.293927778679778
Merged-chr2-45100186-5	chr2	45100036	45100236	+	844.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	10141.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	3.5625691683142	3.37550954443925	3.30090994576418	3.35250614691903	3.26270322955647	3.52716616550752	3.10396590371935	3.11225870747719	-0.498741237874731	0.363899856821396	0.668888232328533
Merged-chr9-88977111-2	chr9	88977011	88977211	+	788.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20191.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	3.08655850924196	3.24486127443719	3.02026194514554	2.8356571813605	3.38284553347852	3.49373363346763	3.25599925335159	3.32254137149687	1.23139611319219	0.0272844369484374	0.15740630066079
Merged-chr15-100605142-2	chr15	100605082	100605282	+	731.75	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-5198.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	3.79426118983257	3.88272724323016	3.9781155520304	3.41127608869024	3.74847622422915	3.36860369933219	3.77857988048554	3.74235780865296	-0.306670785524236	0.550964457387373	0.798797129613765
Merged-chr2-117842561-4	chr2	117842475	117842675	+	954.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040631, intron 2 of 5)	intron (NR_040631, intron 2 of 5)	20647.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	4.08413004964907	4.17110934143202	4.22725562901578	4.24308323778681	4.4102687138869	4.44160196907337	3.96454527100218	4.26878542137537	0.248415070484897	0.538113479055145	0.791350811427248
Merged-chr7-143686312-4	chr7	143686214	143686414	+	984.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024290)	promoter-TSS (NM_024290)	-439.0	NR_131763	79201.0	Mm.290780	NM_024290	ENSMUSG00000037613	Tnfrsf23	SOB|TNFRSFH23|Tnfrh1|Tnfrsf1al1|mDcTRAILR1|mSOB	tumor necrosis factor receptor superfamily, member 23	protein-coding	4.67384295462285	4.72423026102379	4.91065888778019	4.5154357148326	5.29446432913487	5.18696631761971	4.92210328151988	5.19527487203558	0.923859482428246	0.00450695568387345	0.0439874672456367
Merged-chr1-191166449-4	chr1	191166357	191166557	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-1640.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	5.31485924211283	5.65825555642492	5.12734431183272	5.05899444627377	4.83648278041219	5.33633742752379	5.57286338128771	4.86270235684032	-0.224847862073312	0.529142566624812	0.785465136280525
Merged-chr14-29966234-6	chr14	29966220	29966420	+	917.5277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-2060.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	3.63300561058712	3.55080038586863	3.51754914467604	3.61255807816674	3.91208713373632	3.91049362893922	3.50490877781188	4.01205199201753	0.802343643744901	0.0900163134921552	0.327603598428168
Merged-chr11-104549759-4	chr11	104549661	104549861	+	874.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010858)	promoter-TSS (NM_010858)	859.0	NM_001285990	217232.0	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	3.98538198573477	4.18314848450245	4.29916555769976	3.75161065050135	4.22306459961307	3.94596386712568	4.06581117408184	4.12715425118499	0.110879610170607	0.801177601711548	0.923340719847852
Merged-chr7-55842248-4	chr7	55842143	55842343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164661, exon 1 of 32)	5' UTR (NM_001164661, exon 1 of 32)	172.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	6.60102729505062	7.22664219205204	6.90240538244175	6.30441115620157	6.73695882315972	6.77942825642832	6.91695947855816	6.22514118457318	-0.153977279716106	0.580407985265755	0.815718435955212
Merged-chr3-51629212-1	chr3	51629112	51629312	+	598.0	f0_balb.idr	Intergenic	Intergenic	-31967.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	3.23777831633832	3.16205736975231	3.2382390856178	3.28263302547187	2.72809377384908	3.11320322171518	2.9936850688057	3.00227451770108	-1.16243164202247	0.0547964964612676	0.24450600687165
Merged-chr18-46149707-4	chr18	46149606	46149806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49112.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	6.16123863653669	6.57000174531643	5.86557363729171	5.26452079033414	6.7469496373667	6.70581057920974	6.08932711860975	6.27449215442174	0.659680687753015	0.0505519053646694	0.233197282692923
Merged-chr14-60911001-4	chr14	60910949	60911149	+	839.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126483.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	3.75406059992773	3.47341464289211	3.50475589515238	3.55239671429224	3.42937593968708	3.44068266352553	3.4355396170571	3.6086125795435	-0.311531934362431	0.529101528275181	0.785436978479199
Merged-chr9-99163010-4	chr9	99162901	99163101	+	814.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-22790.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	4.14143030578432	3.88893052569943	3.89263760076638	3.90264189343224	4.31459075139366	4.01521207870356	4.43915272849068	4.1394988446774	0.7421921534596	0.0737475517111705	0.292487614106062
Merged-chr6-83652215-4	chr6	83652113	83652313	+	945.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 4 of 6)	intron (NM_016751, intron 4 of 6)	3903.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	4.80726669611432	4.04736006341933	5.234928180125	5.22399253234713	3.96674919503485	3.98128138603927	4.60321522842328	4.45549592288328	-1.38445796027648	0.00506167678466014	0.0479421279913938
Merged-chr14-73257532-3	chr14	73257434	73257634	+	861.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	19643.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	3.42651882300534	3.40701646613426	3.86373342733239	3.66783432559473	3.40968932571022	3.48168595815709	3.47010068817725	3.23932380830095	-0.680489982089572	0.194359974233948	0.494755332451119
Merged-chr2-79339262-3	chr2	79339165	79339365	+	862.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048176, intron 10 of 12)	intron (NM_001048176, intron 10 of 12)	83839.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	3.49600805236581	3.40209547645826	3.28609498125388	3.33353730351928	3.280305079245	3.1419920434446	3.15575771111891	3.340508351007	-0.534977811865564	0.317924644143059	0.629791171116012
Merged-chr7-127935528-4	chr7	127935412	127935612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001319147, exon 10 of 15)	exon (NM_001319147, exon 10 of 15)	-5399.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	7.89002333107984	7.9750067215478	7.81744974600463	7.69443137224149	7.66734373313244	7.77052079148635	7.96933556408067	7.84963519609871	-0.0357352889697785	0.836098484425451	0.937605817007533
Merged-chr4-148586812-3	chr4	148586707	148586907	+	993.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16C|LTR|ERVK	-4706.0	NM_009272	20810.0	Mm.10	NM_009272	ENSMUSG00000006442	Srm	AA407669|SpdST|SpdSy	spermidine synthase	protein-coding	4.45504866228785	4.57027770542427	4.93985574742217	4.73255591310507	3.59487663914367	3.93347267803688	3.79264753617852	3.98433698930158	-2.29723746260674	4.10672044102965e-07	1.55155124348222e-05
Merged-chr11-19926129-4	chr11	19926044	19926244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	1702.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	6.77323520707828	6.71405467520679	6.98797097917432	6.44961066635525	6.2722980302335	6.67674022617014	6.11701559860542	6.79669257274713	-0.355461962837447	0.163742302239086	0.453530988494127
Merged-chr7-59232120-3	chr7	59232048	59232248	+	734.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033962, intron 1 of 10)	intron (NM_001033962, intron 1 of 10)	3398.0	NM_173010	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	3.30221393173046	3.37705306068758	3.51622736166456	3.28589528282114	3.16536428410024	3.22628726119163	3.50105405334335	3.2415991838486	-0.295168215466617	0.581054927858732	0.816097731204617
Merged-chr4-129877522-7	chr4	129877433	129877633	+	968.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28693.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	4.2242911095397	4.16791286493677	4.35526006773128	3.65928752717336	4.28936848497544	4.52621936933672	4.20603320920843	4.35241746003304	0.584353708990619	0.181958207507541	0.478625397345871
Merged-chr2-29678744-4	chr2	29678635	29678835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	59015.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	5.8588758877796	6.28895683682067	5.95123856403432	5.61446059759544	6.16654172082648	5.74770666597974	5.87634501960962	5.92478505984923	0.00920646719939817	0.973789234744642	0.990599589807354
Merged-chr14-74937094-4	chr14	74936977	74937177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	MER44D|DNA|TcMar-Tigger	10800.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	6.35876705733966	6.1217973479664	6.05046244111022	6.35747725860424	6.36050767170248	6.24842379078285	6.16359379138074	5.85763942247402	-0.0892521365051129	0.716566538960651	0.886643627014433
Merged-chr14-34401361-2	chr14	34401261	34401461	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153127, intron 6 of 6)	intron (NM_153127, intron 6 of 6)	25857.0	NM_153127	105450.0	Mm.272673	NM_153127	ENSMUSG00000041445	Mmrn2	AA986839|ENDOGLYX1|Emilin3|EndoGlyx-1	multimerin 2	protein-coding	2.98695694606398	2.82937998730082	2.92670670182918	2.85419094228318	2.68146013551328	3.21311184121356	2.97589221100336	2.86176842862482	0.189962517652814	0.759809061004507	0.905842932790046
Merged-chr4-155187313-4	chr4	155187213	155187413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	35222.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	6.36293389765916	6.06095306538201	6.01261873304472	6.32496348760852	5.71226668946115	5.43275999268434	5.79941186690738	6.09089349035413	-0.671865585221642	0.012139030136003	0.0906847214578673
Merged-chr7-81921806-4	chr7	81921747	81921947	+	869.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013886, intron 1 of 5)	intron (NM_013886, intron 1 of 5)	12612.0	NM_013886	29877.0	Mm.392934	NM_013886	ENSMUSG00000025104	Hdgfl3	2700022B06Rik|HRP-3|Hdgfrp3	HDGF like 3	protein-coding	4.20286786120792	3.8661162035844	4.0228128687294	3.98765814805452	4.07896132737156	4.09591194676576	4.09824848969871	4.06798960103851	0.17280600593957	0.675047492702874	0.866516482716234
Merged-chr2-60172799-4	chr2	60172698	60172898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37138.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	6.27465597563636	6.09607258334819	6.40020526076896	6.77111268044314	5.90002555848715	6.33479825048696	6.18654857499664	6.06917566961594	-0.458675572687478	0.0821489043045289	0.311174341687813
Merged-chr6-54668041-3	chr6	54667850	54668050	+	850.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C2|LTR|ERVK	-13674.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	3.17719333644411	3.21257164240754	3.49241857117386	3.02265224118023	2.76593830785553	3.16510518584898	3.27770118926106	3.17591769375986	-0.488948556178846	0.425047096538667	0.716641115147179
Merged-chr7-19085296-2	chr7	19085196	19085396	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_032418, intron 1 of 14)	intron (NM_032418, intron 1 of 14)	1447.0	NM_001190491	13400.0	Mm.6529	NM_032418	ENSMUSG00000030409	Dmpk	DM|DMK|Dm15|MDPK|MT-PK	dystrophia myotonica-protein kinase	protein-coding	4.22965073146746	4.42126855492709	5.10458021287532	4.5359814848315	4.91461372313513	4.61985876109436	5.0203164272326	5.12937868254861	0.668048756535586	0.0892891014736523	0.326090762123812
Merged-chr2-22864864-4	chr2	22864763	22864963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 10 of 13)	intron (NM_019456, intron 10 of 13)	-30659.0	NM_019501	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	6.30976430468125	6.6464211129797	6.16728381029929	6.6583609945912	6.65577437261381	6.71656533054408	6.47478436926142	6.53613108709172	0.174822613285996	0.449717543459441	0.734839862538956
Merged-chr18-46179425-4	chr18	46179323	46179523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178872, intron 4 of 9)	intron (NM_178872, intron 4 of 9)	19395.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	6.19878351173577	6.0960881173281	6.621473057423	6.74053456389638	6.69882972080609	6.63272734873014	7.28291619403064	6.70690706627992	0.577584816720441	0.031282114834914	0.172206469592757
Merged-chr8-104099179-4	chr8	104099069	104099269	+	872.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131138, intron 1 of 2)	B3|SINE|B2	-2456.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	3.74381109640109	3.71861929096886	4.15455497945232	4.01814463469477	4.61653264481647	3.9817718933971	4.13578777235694	3.96311967785944	0.750077800423441	0.109062404831862	0.364646198202221
Merged-chr5-139736413-4	chr5	139736314	139736514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174850)	promoter-TSS (NM_174850)	-81.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	7.84721430177395	8.08284036028746	7.20631731941362	7.67682037427645	7.73161200875052	7.88753101094178	7.86032280502179	7.39244497685309	-0.0148436637477263	0.948073569225638	0.981359015857754
Merged-chr2-112257722-2	chr2	112257622	112257822	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172521, intron 1 of 6)	intron (NM_172521, intron 1 of 6)	1569.0	NM_172521	213765.0	Mm.78965	NM_172521	ENSMUSG00000041358	Nutm1	4932438M10|Nut	NUT midline carcinoma, family member 1	protein-coding	2.4236779388899	2.32672441491936	2.30799214973782	2.04943957884112	2.0624307479012	2.05462883261512	2.10284571975001	2.0345128451388	-1.55043079038356	0.0683629464668084	0.279190209797519
Merged-chr1-86179021-4	chr1	86178925	86179125	+	971.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027456, intron 9 of 20)	intron (NM_027456, intron 9 of 20)	24245.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	4.92212753115252	5.21385748182333	4.92293488512729	4.92347942936157	5.37797563876721	5.44836065480028	5.3063352994746	5.941288173995	0.977423782717808	0.00198608053675533	0.0232588395073557
Merged-chr8-117134051-3	chr8	117133970	117134170	+	808.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163028)	TTS (NM_001163028)	-24065.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	3.26912770888831	3.04009561622756	2.94236845325816	2.76904338423183	3.14355530758217	3.65274185994072	3.60572785427323	3.2083860827147	1.54498395615693	0.00955951270342495	0.0763934607294358
Merged-chr6-73248497-4	chr6	73248415	73248615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019879)	promoter-TSS (NM_019879)	10.0	NM_019879	56451.0	Mm.29845	NM_019879	ENSMUSG00000052738	Suclg1	1500000I01Rik|Sucla1	succinate-CoA ligase, GDP-forming, alpha subunit	protein-coding	7.13285669147565	7.14108263844179	7.54328377583762	6.97455203399156	6.91043417054065	6.85541669686477	6.59372683988683	6.92132959468559	-0.521525445513134	0.0171071726152461	0.115070066110433
Merged-chr6-38552103-4	chr6	38552010	38552210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170848, intron 1 of 8)	CpG	776.0	NM_001170849	192196.0	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	8.26209880229801	8.24528794597651	8.04654144168995	8.14869037170131	8.06938373394839	8.32804674063342	8.41864652853595	8.31361938267594	0.135195474551207	0.410089331101631	0.705509462427683
Merged-chr10-58350829-4	chr10	58350768	58350968	+	961.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026148, intron 1 of 9)	intron (NM_026148, intron 1 of 9)	-1095.0	NM_001359116	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	4.19577725584187	4.33807885191058	5.09707309221166	4.77801504911306	4.50452713149688	4.70446747980146	4.5092756348465	4.56852988068358	-0.18055572876111	0.659384611389795	0.858262365203983
Merged-chr3-126690809-4	chr3	126690646	126690846	+	982.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 3 of 18)	intron (NM_001025438, intron 3 of 18)	93795.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	4.10971982453505	4.31807549497152	4.20330354269235	4.10034806355005	4.34895674072426	4.37295957781122	4.04465373700867	4.00838017553929	0.0705033831669759	0.8629254825481	0.948398827122694
Merged-chr10-25411602-4	chr10	25411493	25411693	+	839.1375119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	3225.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	4.13967055283817	4.44117418435498	4.66119590182857	3.86915905665552	3.94650742818706	4.11988124288434	3.75635341571515	3.76855012895199	-1.04448979907134	0.0297517414906885	0.166328872727436
Merged-chr6-126792237-2	chr6	126792147	126792347	+	598.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-51573.0	NM_013568	16494.0	Mm.62535	NM_013568	ENSMUSG00000038077	Kcna6	Kv1.6|MK1.6	potassium voltage-gated channel, shaker-related, subfamily, member 6	protein-coding	3.03206394351485	3.1885625505292	3.38491558181593	2.74009794372939	2.56962380590777	2.65795727547105	2.62291300251177	2.97154322191232	-1.83668190842334	0.0114815482187327	0.0870613743114067
Merged-chr10-82953633-4	chr10	82953513	82953713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-31884.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	6.57704436029152	6.77690243925247	6.97199812240008	6.84268598940853	6.57779358661093	6.93847152860855	6.86243731664475	6.35809444621554	-0.145859871955614	0.520945851800718	0.781084085381656
Merged-chr9-118669936-4	chr9	118669830	118670030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 9 of 27)	MER2|DNA|TcMar-Tigger	-41762.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	8.49814979179534	8.27192391924169	8.43877915114372	8.32812131490247	8.6408462135767	8.64741217858833	9.06817969217885	8.40711572388511	0.413909763210772	0.0243661636924444	0.14584364437223
Merged-chr9-3404616-4	chr9	3404522	3404722	+	931.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027545, intron 1 of 17)	intron (NM_027545, intron 1 of 17)	537.0	NM_027545	244672.0	Mm.245482	NM_027545	ENSMUSG00000025898	Cwf19l2	3230401L03Rik|9030209E10	CWF19-like 2, cell cycle control (S. pombe)	protein-coding	4.49699720885529	3.99544223377465	4.1095635843844	4.26378875337746	4.41468633063417	4.46788316915816	4.09241468728972	4.29408767046362	0.236274756636976	0.561943678935924	0.805238039236207
Merged-chr6-5509972-4	chr6	5509879	5510079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13701.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	8.5368374562392	8.43782214837303	8.8970455062804	8.97265186293203	8.12528448931696	8.09155550361037	8.32174650123969	8.186471190519	-0.697561648909454	0.000145615345185777	0.00278547558585821
Merged-chr12-54835196-4	chr12	54835083	54835283	+	902.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27694.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	4.55498853582936	3.96193254094852	4.3552039078158	4.48990651609904	4.46747250737459	4.48388552091819	4.41881684307428	4.16611668586389	0.0645589130245013	0.873742081215507	0.952712014565765
Merged-chr4-102588839-4	chr4	102588731	102588931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177982, intron 1 of 9)	intron (NM_001177982, intron 1 of 9)	-1012.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	5.52912513261247	5.89116902081579	5.76494788551181	5.73355762822676	5.89170828049382	5.4914676498434	5.82688072920332	5.43730238816183	-0.0813508163087855	0.768314156038693	0.909356419531329
Merged-chr12-12231800-4	chr12	12231694	12231894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30345.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	5.6473927765328	5.75112418905	5.70087005886684	5.71138295195971	5.99928404432867	5.99744688748904	5.8392463055703	5.5897173485536	0.273103894969945	0.28577695146562	0.597477154288458
Merged-chr8-85036838-4	chr8	85036758	85036958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122843)	promoter-TSS (NM_001122843)	-57.0	NM_145390	212999.0	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	6.70658162062674	7.00562830728954	6.70776184587832	6.93353233609308	7.224525551675	7.53138026145536	7.07814850857717	7.28151089406137	0.592302709315619	0.00375344192156627	0.038095856628428
Merged-chr9-122785421-4	chr9	122785311	122785511	+	967.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199736, intron 12 of 19)	intron (NM_001199736, intron 12 of 19)	-20136.0	NM_001013405	382117.0	Mm.215892	NM_001013405	ENSMUSG00000046603	Tcaim	D9Ertd402e|Gm1129|TOAG-1	T cell activation inhibitor, mitochondrial	protein-coding	4.84241130552124	4.3088768607616	4.76391411939394	5.18990278952959	5.15891607794561	4.52444287062962	5.76555150616511	4.98519645568304	0.693785265980668	0.113562031104499	0.372599260505404
Merged-chr1-155108574-4	chr1	155108404	155108604	+	859.354126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8868.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	3.48465892199562	3.71921454918385	3.65086715833697	3.11264212784169	3.63626417125563	3.82217882402194	3.78055440371838	3.42316823252038	0.53691794011708	0.313801479312272	0.62578308060315
Merged-chr3-67515629-4	chr3	67515522	67515722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164763)	promoter-TSS (NM_001164763)	-99.0	NM_001164763	109222.0	Mm.38002	NM_001164763	ENSMUSG00000049404	Rarres1	5430417P09Rik|AI662122	retinoic acid receptor responder (tazarotene induced) 1	protein-coding	4.93811353975875	4.92533385104666	5.45669235286546	5.21728036057786	5.63589171510752	5.19459737379832	5.45523544042391	5.45283932871233	0.535276549993851	0.0853739693391137	0.318142179131395
Merged-chr1-177986910-4	chr1	177986805	177987005	+	936.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4493.0	NR_155538	545391.0	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	4.56807117763419	4.51900328948882	4.79736267537237	4.62586586010862	4.60057702888228	4.56800916539155	4.62797356988262	4.92610380901224	0.122509014102778	0.726911055839091	0.891299065366155
Merged-chr11-76217581-4	chr11	76217474	76217674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177367)	promoter-TSS (NM_177367)	-2.0	NM_177367	276919.0	Mm.482713	NM_177367	ENSMUSG00000049396	Gemin4	4932415L08Rik|AU015359	gem nuclear organelle associated protein 4	protein-coding	7.56792082870012	7.49105846062589	7.21620033094274	7.4263285670652	7.73233126741878	7.83112671759739	7.45982927885298	7.42475894891536	0.255847578353969	0.179808256837627	0.476066504740569
Merged-chr10-12919456-4	chr10	12919364	12919564	+	981.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038028, intron 2 of 2)	intron (NR_038028, intron 2 of 2)	3663.0	NR_038027	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	5.09707350775829	5.06437822657173	4.6890398451176	4.90842006089812	6.08354338261049	6.28945078027621	6.52836434775966	5.91664213414584	2.13407681491988	3.89624034739974e-13	4.53896058408455e-11
Merged-chr8-76988130-4	chr8	76988027	76988227	+	915.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083906, intron 2 of 8)	Charlie4a|DNA|hAT-Charlie	85619.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	4.29207241926167	4.35840896429041	4.76000272851666	5.33257131842404	5.14408795257026	4.72721253996981	5.07775747834431	5.15839329006044	0.510478619116294	0.239237219594528	0.549678888954725
Merged-chr4-53397482-4	chr4	53397384	53397584	+	939.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-42929.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	5.09242534192638	4.89252601048095	5.24298374890697	4.97623125966515	5.0573336119886	5.26396472980494	4.82515450913139	4.8055895445957	-0.0933546998119974	0.774841041814744	0.912047270846052
Merged-chr4-129608786-4	chr4	129608703	129608903	+	959.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029748)	TTS (NM_029748)	5454.0	NM_001195730	100504491.0	Mm.482597	NM_001195730	ENSMUSG00000078552	Dcdc2b	Gm12964|Gm1366	doublecortin domain containing 2b	protein-coding	5.30914322316959	5.13877242658192	4.97148027908448	5.18414301084548	4.95341196028752	5.07341488796256	4.94776824879744	4.77920875683589	-0.422110792309181	0.177409365678017	0.472806643808905
Merged-chr10-99179347-4	chr10	99179246	99179446	+	883.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	71211.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	3.9910068135551	3.99844566502547	3.59710626354181	3.64034007282804	3.90713653926696	3.59244136406157	3.74407464676696	3.41029097616604	-0.388563690693586	0.442641431367874	0.729357249023888
Merged-chr7-99891871-3	chr7	99891785	99891985	+	896.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164258, intron 8 of 18)	intron (NM_001164258, intron 8 of 18)	32667.0	NM_001164258	446101.0	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	3.28306929059443	3.16102206117701	3.28353145491203	3.25614875226599	2.97545222613838	2.95167541819828	3.10223216739819	3.22747227459793	-0.720762336144142	0.204129553120446	0.50737576212243
Merged-chr9-108825965-2	chr9	108825869	108826069	+	657.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359573)	promoter-TSS (NM_001359573)	-76.0	NM_001359573	107934.0	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3	protein-coding	2.17352460057775	2.23693935853487	2.09812403676974	2.04776254844866	2.20448748172886	2.41800013799065	2.3686551339534	2.43808372481629	1.399851907885	0.0615056671517166	0.262433274319149
Merged-chr1-172481323-4	chr1	172481208	172481408	+	692.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145800)	promoter-TSS (NM_001145800)	-905.0	NM_001145800	93842.0	Mm.214530	NM_033608	ENSMUSG00000037995	Igsf9	644ETD8|Dasm1|Kiaa1355-hp|NRT1|Ncaml|mKIAA1355	immunoglobulin superfamily, member 9	protein-coding	3.64488378479364	3.88555476267964	3.9623636602142	3.83159817061757	4.0475398792727	3.70144401349381	3.99068737992698	4.05018945013265	0.346544807707078	0.43550530351016	0.724661196403434
Merged-chr16-33684456-4	chr16	33684344	33684544	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175256)	promoter-TSS (NM_175256)	-22.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	5.40957762802442	5.36336898285981	5.2538167248378	5.67997378756351	5.58438396902043	5.72329541661797	5.64675766715064	5.25023091342091	0.184860960853814	0.529401110150171	0.785614700149936
Merged-chr9-86579817-4	chr9	86579733	86579933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7780.0	NM_027100	69519.0	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	5.2478138663789	4.97722138387649	5.61119942730986	5.55066037013325	4.73781768122686	4.46519388692872	5.46529514113461	5.0855103250528	-0.710109138736187	0.0663594885951657	0.274584469173079
Merged-chr7-143046486-4	chr7	143046375	143046575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 1 of 4)	intron (NR_110355, intron 1 of 4)	-6275.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	6.86413910135986	6.86290373904957	6.86534183441384	6.80287335045801	6.77363684542357	7.1332209134933	6.97123810244675	6.87399189697865	0.127339760366585	0.517395103342881	0.778861053651192
Merged-chr5-106964368-4	chr5	106964274	106964474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009863)	promoter-TSS (NM_009863)	52.0	NM_009863	12545.0	Mm.20842	NM_009863	ENSMUSG00000029283	Cdc7	AI597260|Cdc7l1|muCdc7	cell division cycle 7 (S. cerevisiae)	protein-coding	6.36765119168445	6.29240724197192	6.74167474610626	6.4307242251369	6.03468724985268	6.11628040377523	5.97828593229345	6.13619242768361	-0.605658239999683	0.00971620441536988	0.077324431359751
Merged-chr2-126427835-3	chr2	126427737	126427937	+	695.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 7 of 27)	intron (NM_001359975, intron 7 of 27)	63716.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	2.98214840991367	3.43438578275479	3.11550143699975	3.36795438018727	3.20352124151612	3.34773230332872	3.22441311038583	3.23471066493316	0.0160461902451544	0.977332411421304	0.991888117862217
Merged-chr1-152810839-4	chr1	152810786	152810986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 2 of 15)	intron (NM_010877, intron 2 of 15)	10733.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	6.43697506857569	6.57419034036635	6.4549147665248	6.38910341440736	5.89724125267159	6.43335984168211	5.94288352270709	6.77188622310155	-0.235207544122128	0.390429500897572	0.690570939884669
Merged-chr2-22965619-4	chr2	22965511	22965711	+	973.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 3 of 10)	intron (NM_001077190, intron 3 of 10)	70089.0	NM_001355467	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	5.34322287151641	4.98687357365539	5.16132386189677	5.62450443775651	5.2801111652223	4.8767596699444	4.99897480890286	5.49979844703657	-0.22860767780891	0.504617201724149	0.770888948942188
Merged-chr7-16242289-4	chr7	16242163	16242363	+	790.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146005)	promoter-TSS (NM_001146005)	68.0	NM_001146005	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	3.57562498049368	3.40039856684122	3.91240704371315	3.55972676601678	3.46342264742738	3.80035860897007	3.50667108458411	3.77789949000444	0.0643009884133983	0.898445839879142	0.962182180379716
Merged-chr1-13513975-4	chr1	13513874	13514074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS-int|LTR|ERV1	75936.0	NM_028173	72265.0	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	6.29452231294317	6.22292412387674	6.62240621215177	6.6189276895348	5.9742597299541	5.92505068883654	6.51484029817777	6.30964301484902	-0.387970413794708	0.13183800737464	0.404210211448674
Merged-chr9-13443686-4	chr9	13443584	13443784	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12323.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	5.22957542835897	5.35507819464906	5.23048055737868	5.9969893449759	4.5289304993322	4.93513505193515	5.10923337921198	4.95377440452294	-1.17071648829542	0.00137412037674166	0.017412945397204
Merged-chr4-114973403-4	chr4	114973321	114973521	+	950.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025647, intron 1 of 5)	intron (NM_025647, intron 1 of 5)	13807.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	4.646333217474	4.48624564371859	4.41883551130031	4.71232517211353	4.9221794502709	5.211181370002	4.85326055526499	5.12653963480038	0.909050679251829	0.00815162764011844	0.0680376059798301
Merged-chr7-127026212-8	chr7	127026062	127026262	+	865.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010772, intron 1 of 4)	intron (NM_010772, intron 1 of 4)	317.0	NM_010772	17188.0	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	3.24421324561732	3.37901450858848	3.55710220924723	3.61789853428376	3.67458941450706	3.83383864680174	3.54319938856534	3.93693339345002	0.883373598210329	0.0830351939522039	0.313098589305712
Merged-chr2-50813953-4	chr2	50813847	50814047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95737.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	5.2416167231056	5.26212242502029	5.57276356000514	5.9188078131346	5.54310177284923	5.24120109254926	5.84644077941593	5.69445883337149	0.0860436994855446	0.79027761462363	0.918828686312538
Merged-chr8-85500680-4	chr8	85500592	85500792	+	956.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 2 of 11)	intron (NM_173866, intron 2 of 11)	8075.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	4.54406366089654	4.52939565344593	4.36595415574241	4.58902650664117	4.7958498501684	4.71818008644231	4.48206075971989	4.87060278429079	0.454071302402483	0.199135788793432	0.500933329503325
Merged-chr1-92666866-4	chr1	92666752	92666952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-18011.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	6.9409285921663	7.098792340841	7.77654539303769	7.9077415294469	7.16844075768491	7.0345620391544	7.33772162506793	7.18898333852621	-0.430164874438128	0.0948865533112121	0.337072914016009
Merged-chr17-23841428-2	chr17	23841342	23841542	+	672.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027644, intron 5 of 6)	intron (NM_027644, intron 5 of 6)	2714.0	NM_027644	71003.0	Mm.328839	NM_027644	ENSMUSG00000024114	Prss41	4931440B09Rik|Tessp-1|Tessp1	protease, serine 41	protein-coding	2.93089382797132	3.03296279012831	2.99249263048724	2.50845757016439	3.03779876661825	3.1635732870744	2.98091470024301	2.72760231818906	0.461446694332903	0.487243776399233	0.760600900973846
Merged-chr19-29824482-4	chr19	29824380	29824580	+	861.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11506.0	NM_177721	240614.0	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	4.34584343258093	4.34804998485865	4.38900654531214	4.42606056695419	4.22331167200288	4.18194275118015	4.32711864520616	4.5422454992895	-0.138382641449073	0.716731992102218	0.886684275337941
Merged-chr5-88766268-4	chr5	88766176	88766376	+	741.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007832, intron 1 of 6)	intron (NM_007832, intron 1 of 6)	1263.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	3.02670964713368	3.31611581133507	2.95410324893923	3.29404190134829	3.52621633975494	3.2743978344351	3.27266664789822	3.76465495823904	1.08895443438187	0.0635569907682962	0.267656008864612
Merged-chr8-56277348-4	chr8	56277250	56277450	+	896.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17202.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	4.47419913482555	4.17489512208359	4.74429625656616	4.7339887803752	4.94323832652914	4.46763034471912	4.53708260178444	4.42867208109507	0.148454067000435	0.712369622880805	0.884870903565831
Merged-chr11-100414577-4	chr11	100414485	100414685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_176830, exon 1 of 8)	exon (NM_176830, exon 1 of 8)	234.0	NM_176830	66180.0	Mm.4940	NM_176830	ENSMUSG00000006931	P3h4	1110036O03Rik|AI413214|Leprel4|Sc65	prolyl 3-hydroxylase family member 4 (non-enzymatic)	protein-coding	5.63739863024769	5.77482415300115	5.80419385990938	5.4613127686497	5.40743256271143	5.4359209258542	5.42023547219738	5.63439694477295	-0.322861690121864	0.24203436500531	0.552650180178775
Merged-chr4-49632015-4	chr4	49631922	49632122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163263)	promoter-TSS (NM_001163263)	-38.0	NM_001163263	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	8.10571193413956	8.13444227506481	8.15115763550601	8.26913632830801	8.25198729189227	8.19817820666979	8.1962517541025	8.32968074817336	0.0940890809418677	0.537615634151478	0.79117876286038
Merged-chr19-37814690-3	chr19	37814596	37814796	+	929.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116888.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	4.30567029379306	3.96768937531522	4.30636955807896	4.33692618037467	3.89104225427766	3.69922532253184	3.81611690371678	4.34256010094777	-0.730574485535897	0.111013625696781	0.368126664964881
Merged-chr16-36531784-4	chr16	36531687	36531887	+	912.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013803, intron 1 of 6)	intron (NM_013803, intron 1 of 6)	30347.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	4.41393522448275	4.22821077727003	4.24131037943027	4.60737887734172	4.48280813685452	3.92735282999027	4.39438650877108	4.28426221957801	-0.229041103598248	0.582837168357333	0.816777579274426
Merged-chr1-154040375-3	chr1	154040256	154040456	+	873.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	140427.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	4.04289906805272	3.74948361127385	3.74643753389012	3.64508274058188	3.73685452675753	3.97532766893135	3.83711764738877	4.24407768386958	0.45985253821349	0.319697219582859	0.631559723368442
Merged-chr13-45974828-4	chr13	45974727	45974927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9836.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	6.0956946518774	5.84437760762746	6.2992822600443	5.84891449020207	5.8562118513736	6.34814373518814	5.89550521166784	5.64127127933326	-0.109249006769949	0.694918745357655	0.876183250613805
Merged-chr8-122978407-2	chr8	122978307	122978507	+	693.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	URR1A|DNA|hAT-Charlie	63877.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	3.06423411647249	2.79363649228679	2.79515503304828	2.37405289668785	2.75767737694043	2.63628326738205	2.44861894611558	2.52884416588313	-0.868780528292899	0.244777649526148	0.55588259948383
Merged-chr11-52076442-4	chr11	52076393	52076593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	-22331.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	7.43999397583524	7.30440813559141	7.32543569990593	7.39980125032174	7.12024720560379	6.93884229104954	7.20557756896252	7.15868260047861	-0.349628486154759	0.0534049577773932	0.241207327957467
Merged-chr13-103505214-3	chr13	103505120	103505320	+	768.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-170728.0	NM_175171	328329.0	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	3.61017474332525	3.87215944281925	3.89551353378531	3.77543004763369	3.37851320048541	3.2095847461186	3.5961239894197	3.43860696959765	-1.2542636108095	0.0152546400899721	0.106139787582026
Merged-chr13-3537989-4	chr13	3537884	3538084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008112)	promoter-TSS (NM_008112)	-91.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	8.89866564226195	8.81662149652509	8.88888876188254	8.71663038880049	8.72835542783562	8.79664747684402	8.83020421812615	8.44481262740628	-0.149860365505594	0.341958476511799	0.650930987073338
Merged-chr17-26532823-4	chr17	26532793	26532993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24421.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	8.26454330450135	7.99706903603171	8.25486969279647	8.22217025453865	7.69637005027569	8.00817870279953	7.73714337746361	7.9366727793052	-0.442200429276666	0.00973256694402185	0.0774200248668453
Merged-chr6-91716420-4	chr6	91716323	91716523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	32356.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	7.34380912533811	7.26036105094364	6.92012806470183	7.00741569997507	7.144618820661	7.17665729843606	7.02659378640365	7.13982191401282	-0.0211588458163817	0.914307155234784	0.967950384482346
Merged-chr14-103795805-3	chr14	103795692	103795892	+	849.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47909.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	4.08386319227733	3.83493173785469	3.99716199324821	4.12422970637151	3.89846359078267	3.86747986795274	3.73364043797815	3.439606114529	-0.761001588946211	0.107530410276274	0.361609678518616
Merged-chr5-146221040-4	chr5	146220929	146221129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256086)	promoter-TSS (NM_001256086)	-58.0	NM_001256086	74132.0	Mm.26696	NM_028774	ENSMUSG00000029634	Rnf6	1200013I08Rik|5730419H05Rik|AA537053	ring finger protein (C3H2C3 type) 6	protein-coding	7.36122255703147	7.48834278974751	6.99644795844392	7.35698363554047	7.66509777445483	7.64749390704354	7.72449074626863	7.37768353250933	0.390453422072389	0.0440123882344559	0.213854719239562
Merged-chr3-152209818-4	chr3	152209677	152209877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355372)	promoter-TSS (NM_001355372)	306.0	NM_001356363	67035.0	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	6.44759741482586	7.0273588376841	6.35706508220373	6.62849862197009	6.81926025171541	6.69447001787615	6.77024651876445	6.47921318340135	0.076259561521628	0.74973522194649	0.90145785170238
Merged-chr13-41606412-4	chr13	41606331	41606531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163572, intron 1 of 2)	CpG	215.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	5.52899520668097	5.27301193703055	5.35684897457192	5.42109288771002	5.77731057229284	5.59227024163969	5.50216599310753	5.57882967765024	0.390238351978944	0.149963413638662	0.432360854406563
Merged-chr14-25402666-3	chr14	25402542	25402742	+	850.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56543.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	3.43920262910604	3.21127113003922	3.53904207905695	3.19994858499736	3.13762126080855	3.50233355225434	3.20285624793559	3.08398703067314	-0.405266284541062	0.46985891549647	0.748648947719156
Merged-chr1-155470621-4	chr1	155470512	155470712	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-53168.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	4.93025332662803	4.99452478836939	5.09399422736065	4.71305574851663	4.90377995528507	4.61041906646961	4.79942280424645	5.15005707818877	-0.0873426970342426	0.798876412611906	0.922340662329936
Merged-chr11-93955298-1	chr11	93955198	93955398	+	1000.0	f1_c57bl6.idr	intron (NM_001077529, intron 1 of 3)	intron (NM_001077529, intron 1 of 3)	485.0	NM_001077529	18103.0	Mm.1260	NM_008705	ENSMUSG00000020857	Nme2	NM23-H2|NM23B|nm23-M2	NME/NM23 nucleoside diphosphate kinase 2	protein-coding	3.7495327092595	3.2738020871076	3.65583844755768	3.60287872864965	3.64584250082327	3.30097679747301	3.31112668953154	3.60381263211359	-0.322787817272823	0.54373022607653	0.794852719432776
Merged-chr2-150919479-3	chr2	150919369	150919569	+	634.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 4 of 6)	L1Md_F2|LINE|L1	9875.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	3.79188165107859	3.34612361884168	3.69608455826852	2.51367323511287	3.49493436019842	3.54049426709889	3.57619899949386	3.96318437378062	0.526840873169491	0.680598085000352	0.868928920613391
Merged-chr11-11573872-4	chr11	11573775	11573975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53963.0	NM_001305143	102631730.0	Mm.159430	NM_001305143	ENSMUSG00000062511	4930512M02Rik	-	RIKEN cDNA 4930512M02 gene	protein-coding	6.02140862615639	5.99093564746029	5.59544193251353	6.23651183446062	5.77039325128861	5.77551135113555	6.49159672638002	6.12049382427122	0.122015548459392	0.679728174444135	0.86857902618052
Merged-chr9-56265101-4	chr9	56264982	56265182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 3 of 6)	intron (NM_172924, intron 3 of 6)	-104012.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	5.73342673312117	5.75837655950877	5.03768035750164	5.71313487995652	5.17433312373452	5.55028038882129	5.01366382833462	5.31066623186781	-0.578171761387457	0.0741817271720375	0.293424904605638
Merged-chr1-170885465-4	chr1	170885350	170885550	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356485)	promoter-TSS (NM_001356485)	90.0	NR_151476	80915.0	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	4.92186985307023	5.54633145394401	5.2069981833575	5.40302616315916	5.09260000268626	5.14003725886595	5.3853405502834	5.29553944839706	-0.132481432406243	0.673743087868853	0.86586684339396
Merged-chr18-35941739-2	chr18	35941639	35941839	+	911.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23091.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	3.10368627150079	2.68121513236071	2.77509836543317	2.61976329619384	2.53879150636799	2.81895649129407	2.70171227860887	2.57167574459906	-0.700170821128412	0.305653365366752	0.618037438382799
Merged-chr7-16044031-4	chr7	16043943	16044143	+	945.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27802.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	4.53933355668304	4.45764487043857	4.6209669933981	4.69278469768896	4.53453869827913	4.33723385886923	4.8130469615879	4.83334228030541	0.12249490161774	0.737810708440195	0.896540082559105
Merged-chr15-5221944-3	chr15	5221849	5222049	+	856.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME2|LINE|L1	22238.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	3.70473135518576	3.90885760071392	3.99865444531422	3.91455391349349	3.57981359799641	3.76686518005911	3.84403954759265	3.75693507267822	-0.454909547688717	0.318389971285291	0.630324296771312
Merged-chr5-65092140-4	chr5	65092042	65092242	+	885.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15426.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	4.58905442404128	4.20988584875359	4.43630912251836	4.10455796604945	4.64449208244813	4.34146410938025	4.09642436219576	4.43344192372377	0.161234603619948	0.695405290392524	0.87660540152023
Merged-chr8-105347190-4	chr8	105347135	105347335	+	890.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	735.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	4.70041986660123	4.90824920069982	4.27306959728443	3.99982150443443	4.5441540011395	4.59404800768868	4.39695417165628	4.92986462711752	0.255531818046604	0.555869129567861	0.801730133825154
Merged-chr6-13872335-4	chr6	13872224	13872424	+	995.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001352887)	promoter-TSS (NM_001352887)	755.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	5.35235689762697	5.49015251582023	5.3227070792217	5.51670152564075	5.59511926008928	5.43528628310395	5.59554617879201	5.11881081470648	0.0450353211911318	0.876073854778878	0.953397811847021
Merged-chr5-59854992-4	chr5	59854899	59855099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131003.0	NR_040683	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	5.60082438358367	5.21299896677462	5.27976985708149	5.89703069571295	5.73183475870279	5.64058053462988	5.46638037061306	5.54509291760042	0.0908481265160347	0.76831726647325	0.909356419531329
Merged-chr17-83276435-7	chr17	83276281	83276481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	61098.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	6.19327498634126	6.51964201664515	6.98913254840481	6.45089107814171	6.53961195765969	6.92365446552118	6.58144953975521	6.6259993949906	0.153035095533889	0.538118050545333	0.791350811427248
Merged-chr5-64861504-4	chr5	64861400	64861600	+	908.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57977.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	4.43790461189455	4.60652227280236	4.98171074610597	4.19627126003671	4.87646607654181	4.74121992449594	4.50502616021743	4.29323133424164	0.115617894280461	0.780134052089717	0.914348108890036
Merged-chr15-103455184-3	chr15	103455095	103455295	+	844.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153505, intron 2 of 30)	intron (NM_153505, intron 2 of 30)	1370.0	NM_153505	105855.0	Mm.30805	NM_153505	ENSMUSG00000022488	Nckap1l	4930568P13Rik|AI463083|Hem1|Hemp1	NCK associated protein 1 like	protein-coding	3.05423735486709	2.74145018721771	2.84113754127977	2.93301940079466	2.70185807447354	2.45372846179411	2.57718342135419	2.58316229654468	-1.58496960166788	0.02641342617934	0.154117654071583
Merged-chr9-44721423-4	chr9	44721320	44721520	+	975.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153537, intron 4 of 21)	CpG	13778.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	5.91487295710515	5.55747405189421	5.66018052124385	5.70902887631504	5.200626692239	5.38806301398067	4.88507365346229	4.86184440532599	-1.08663934882925	0.000395255217785045	0.00638535432290552
Merged-chr8-13890333-4	chr8	13890208	13890408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025556)	promoter-TSS (NM_025556)	-37.0	NM_025556	66423.0	Mm.29063	NM_025556	ENSMUSG00000031458	Coprs	1700029I03Rik|2410022L05Rik|AA409325|AI256813|C85432|Copr5	coordinator of PRMT5, differentiation stimulator	protein-coding	7.22895748755615	7.43331078906254	7.30665625438831	7.45546679690941	7.44121856711817	7.42984495791595	7.71059930635817	7.17931602799189	0.118659721817156	0.539358183797812	0.79215032691412
Merged-chr8-3665680-4	chr8	3665576	3665776	+	902.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026985)	promoter-TSS (NM_026985)	-86.0	NM_026985	69189.0	Mm.175176	NM_026985	ENSMUSG00000013974	Mcemp1	1810033B17Rik	mast cell expressed membrane protein 1	protein-coding	4.36306212115127	4.41586703386169	5.03768275459981	4.40968108538072	4.31593088277672	4.49423237163483	4.70491667292633	4.49402572088859	-0.164381231837894	0.681739446420163	0.869606368114473
Merged-chr1-87652866-4	chr1	87652738	87652938	+	992.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	32526.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	4.93274134153919	5.4412048254775	5.50174321824124	5.29716761363459	5.18266879671931	5.22452463272417	5.25367993432388	5.33535870439722	-0.117654219579664	0.697423512803388	0.877825471129288
Merged-chr18-34776923-4	chr18	34776827	34777027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081256)	promoter-TSS (NM_001081256)	-81.0	NM_001081256	277250.0	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	7.62614593825282	7.83525895269612	7.04362034709322	7.40454306100454	7.71199250571247	7.87076739462939	7.76351266483216	7.36921934722831	0.239129665594895	0.283736501842681	0.595807312288999
Merged-chr11-103409210-3	chr11	103409140	103409340	+	743.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 1 of 11)	intron (NM_183034, intron 1 of 11)	3424.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	3.50464065436561	3.71616471139491	3.55921089321324	3.51624426425946	3.57300542511294	3.44100907682189	3.18592538979865	3.7066821743885	-0.266900559807188	0.606492533588183	0.829449564774878
Merged-chr3-60320389-4	chr3	60320282	60320482	+	896.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-152448.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	3.59785012409997	3.89940067002307	3.82781475225337	3.98578501562649	4.14479335654892	4.00056236443974	4.17226297131102	3.65761381907367	0.4589347800144	0.324635898443788	0.636164229014807
Merged-chr2-6791737-1	chr2	6791637	6791837	+	568.0	f0_balb.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-70075.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	3.35653542592376	3.13305138345041	3.45557259208286	3.31641932779009	2.95527581365716	3.04475663856374	3.06063834688773	3.1318013408299	-1.0955612664293	0.0563567008277906	0.248589423427731
Merged-chr15-93405737-4	chr15	93405557	93405757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358749, intron 2 of 8)	intron (NM_001358749, intron 2 of 8)	7193.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	4.73837526694736	5.31737843129245	5.00812121439407	4.80797185922304	5.24522662008738	5.1821133597282	5.08306189971969	5.00473679529011	0.294696539524018	0.369828608152373	0.67403749717511
Merged-chr3-65929554-4	chr3	65929471	65929671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28678.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	7.66920555173558	7.89591626318189	7.46451957956853	7.10243241592607	7.6711697369011	7.96583263018393	7.74319580305015	7.41982168974761	0.203506091369653	0.372196803312345	0.676099595682082
Merged-chr15-58775755-4	chr15	58775650	58775850	+	866.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47677.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	3.8383833332299	3.38062576595797	3.73176643270959	3.62666806918353	4.22814835466941	3.79502760843122	4.13654946458109	4.07083337778622	1.1941162092207	0.009799243357705	0.0777589356609457
Merged-chr17-74868522-6	chr17	74868505	74868705	+	845.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-136924.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	3.35443794984126	3.30274708788035	4.00680119153199	3.22131782536921	3.54716483333604	3.71212628633565	3.63024038233811	3.79112125715841	0.527106030166767	0.334757602525278	0.645195401969802
Merged-chr1-134962557-4	chr1	134962442	134962642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278115)	promoter-TSS (NM_001278115)	-23.0	NM_026024	67196.0	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	7.86439478654433	7.77290790800604	7.90226220765546	7.89900850846689	7.87863067281993	7.82501518717509	8.02571826886307	8.07766361728701	0.120422528558399	0.459343595793891	0.741915398927925
Merged-chr7-27545839-3	chr7	27545729	27545929	+	868.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011116, intron 1 of 13)	RMER19B|LTR|ERVK	7389.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	3.12935469881119	2.85649857954773	3.28336438779184	2.69278185517776	2.96530549892611	2.93323735951046	3.00441063563368	2.75264499245205	-0.363705737549659	0.574586938302763	0.81246206040379
Merged-chr2-72318641-1	chr2	72318541	72318741	+	687.0	f0_balb.idr	intron (NM_023057, intron 2 of 19)	ERVL-int|LTR|ERVL	32940.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	3.09420325355569	3.12073845105825	3.44282654069983	3.27499799936505	2.48640186291044	2.72611920898849	2.76418747731136	2.90915489291053	-2.60790155519019	0.000518239932835221	0.00794482019799228
Merged-chr9-119076731-5	chr9	119076747	119076947	+	965.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019676, intron 3 of 14)	intron (NM_019676, intron 3 of 14)	11414.0	NM_001293648	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	5.04975830265366	4.97340723580724	4.95740691060874	4.55975756319728	4.80276952542462	4.31498071054531	4.60621542830137	4.81797653659754	-0.473783039800629	0.205919560546495	0.509742936639736
Merged-chr15-101379368-4	chr15	101379284	101379484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9259.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	6.18459405230591	6.40136946020668	6.33327282141788	6.4197972075235	5.99317888027125	5.78106175899666	5.91930111873976	6.27544625478079	-0.518791489885358	0.0310067882091645	0.171087765731792
Merged-chr13-33003127-4	chr13	33003011	33003211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1430.0	NM_009256	20723.0	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	6.33483882733794	6.77485559652345	6.44910217596349	5.9677823971384	7.30379179142207	6.7949205893881	6.7999282143534	6.85620863260462	0.80286422829974	0.0020628613024948	0.0239452714693864
Merged-chr8-80031402-4	chr8	80031307	80031507	+	932.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020259, intron 4 of 12)	intron (NM_020259, intron 4 of 12)	26601.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	5.10114106039375	4.54006450623082	4.93479276037138	5.49587025774663	5.18401380930434	4.87874400791249	4.83820896124324	4.81964857039857	-0.263232328742905	0.49050307509967	0.762251978763558
Merged-chr6-115993876-3	chr6	115993849	115994049	+	938.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026376, exon 1 of 36)	exon (NM_026376, exon 1 of 36)	1056.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	3.35264531030285	3.07920336057013	3.30073321999533	3.15849639953438	3.02515782402811	2.96698198232561	3.17702213602054	3.35114984330269	-0.332349898946378	0.560553061502137	0.80456182516632
Merged-chr17-28951882-4	chr17	28951777	28951977	+	982.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356299)	promoter-TSS (NM_001356299)	-559.0	NM_001356300	66989.0	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	5.09830295555988	4.86373029802791	4.64680635583857	4.75965134293643	4.78400032263516	4.94012904620085	4.29861099886221	4.97301089993306	-0.151784282973364	0.680884651675534	0.868994434770989
Merged-chr1-63181211-4	chr1	63181111	63181311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_018796)	TTS (NM_018796)	2188.0	NR_028558	100217464.0	Mm.484706	NR_028558	ENSMUSG00000064602	Snora41	MBI-83	small nucleolar RNA, H/ACA box 41	snoRNA	7.27408485997714	7.19323934919616	6.81242475647764	7.40880334807	7.18886807282442	7.3877417630354	7.34871063275982	7.01605731238636	0.0534952411736832	0.801041526808397	0.923337043240231
Merged-chr13-96697944-4	chr13	96697828	96698028	+	788.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-26992.0	NM_008255	15357.0	Mm.316652	NM_008255	ENSMUSG00000021670	Hmgcr	HMG-CoAR|Red	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	protein-coding	3.81479565571735	3.70883683215469	3.86342066562094	3.55319026462255	3.79306150787503	3.46441771133619	3.93647339068887	3.81308746832404	0.109063253834361	0.819088747505128	0.930716100358665
Merged-chr13-95799038-3	chr13	95798883	95799083	+	838.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 2 of 35)	intron (NM_027711, intron 2 of 35)	92939.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.29902962424913	3.37342173149749	3.46179498352776	3.39814077964862	3.29261147171633	3.4117119905917	3.10425344614267	3.23884008356475	-0.432523932885755	0.415083060586767	0.709483500243191
Merged-chr3-89430299-4	chr3	89430206	89430406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293763)	promoter-TSS (NM_001293763)	92.0	NM_001293763	68911.0	Mm.22521	NM_026869	ENSMUSG00000047824	Pygo2	1190004M21Rik	pygopus 2	protein-coding	8.14196232953006	8.22313950733987	8.02787298683723	8.3641833168979	7.86188543597932	8.04827060515014	8.31240325356634	7.7200464650593	-0.253710232669779	0.182620186523666	0.479233234647102
Merged-chr1-88701710-2	chr1	88701610	88701810	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177305, exon 1 of 1)	5' UTR (NM_177305, exon 1 of 1)	481.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	4.91708844085703	5.39143219355021	4.91789102097522	5.1102589570653	4.93127475439853	5.20522004273711	5.39651093788607	5.42013234129841	0.260329601573645	0.425769642960776	0.717179577733987
Merged-chr1-185207995-4	chr1	185207878	185208078	+	921.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 1 of 34)	MTC|LTR|ERVL-MaLR	3810.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	4.78258803330584	4.70655268524118	4.99179146055806	4.95714074751072	4.96639836899574	4.66668634399816	4.79775410361075	4.74195242921016	-0.127546716853725	0.703411470423664	0.880690314212345
Merged-chr5-124862591-4	chr5	124862520	124862720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144819)	promoter-TSS (NM_144819)	-85.0	NM_001081750	269704.0	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	6.56331297753348	6.72750428473597	6.16419435510531	6.52235820016531	6.78676885075384	6.81982764768733	6.71235422156082	6.85010716038709	0.397808940494125	0.0669664789259879	0.275989057001499
Merged-chr11-106999611-4	chr11	106999509	106999709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010655)	promoter-TSS (NM_010655)	-84.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	7.21932131741481	7.26662345398077	7.10521251666756	6.79656871959352	7.50711096799744	7.71634533243558	7.02034558233914	7.27992315320109	0.415659504230772	0.06510389560642	0.271503994924383
Merged-chr5-100624964-4	chr5	100624844	100625044	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49312.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	4.78439061821127	4.67674289771552	4.85863225826167	4.76474320431333	5.14117786705122	4.75789710129446	4.79956790456768	4.85538803139541	0.286543451884952	0.38877285068096	0.68909828524669
Merged-chr19-34199665-4	chr19	34199552	34199752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	6718.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	6.83243172226619	6.43451396237394	6.18619365128766	6.75822758026497	6.60424357397335	6.56354939032013	6.6480951236431	6.58639297625267	0.0188906836016578	0.935427959814395	0.976559844408689
Merged-chr10-117720057-4	chr10	117719965	117720165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9307.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	6.2402023022728	6.82093616232432	6.5053186232191	6.4876367858889	7.03109457859218	6.6478383981183	6.4549933766567	6.73298948636143	0.303625964092634	0.208106905928234	0.512289173683755
Merged-chr1-155049835-2	chr1	155049735	155049935	+	980.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	33429.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	2.84072322232029	2.79661622769365	2.70383168642197	2.28465263154134	2.62993363710785	2.95517528916532	2.83025279581632	3.41113504588811	1.37696418993482	0.0610819681756314	0.261251857515519
Merged-chr10-21855498-4	chr10	21855374	21855574	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26710.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	5.29078607982436	5.1525581410855	6.0036719955579	5.57574571675981	5.19643433161617	4.96781050218151	4.88720217934844	4.78088477656405	-1.04518200964313	0.00288513676362261	0.0310306965394218
Merged-chr19-47449080-4	chr19	47448960	47449160	+	795.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	MIR|SINE|MIR	15351.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	3.71216074877623	3.78980792611678	3.54167982003915	3.36899510505751	4.19306023617151	3.83260198428341	3.84692782307798	3.65609011879062	0.900247396562434	0.0645556711007584	0.270044689525581
Merged-chr1-191880353-4	chr1	191880265	191880465	+	728.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26416.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	3.28404969551206	3.21974437894418	3.81502687331438	3.45183919027474	2.76156137679339	3.05961121773345	3.38470171711517	3.45035440832524	-0.967799526984123	0.140366784163077	0.416558988115225
Merged-chr3-41566171-4	chr3	41566048	41566248	+	986.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130186, intron 1 of 10)	CpG	1268.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	4.78150755313256	5.20696293184953	4.97132972403099	5.26365934823834	5.02048376140774	4.95770641581635	5.25653619908699	4.89545598605377	-0.0896530151612183	0.78525159904279	0.916435002431157
Merged-chr5-114597849-4	chr5	114597752	114597952	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004180, intron 2 of 2)	B4|SINE|B4	29601.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	6.03563098093982	5.75014149095604	5.72525269174719	5.92242123486032	5.81873881713194	5.34872937673162	5.56426401685362	6.05189291992807	-0.22363418506303	0.427200962173403	0.718383511778035
Merged-chr9-77910136-4	chr9	77910031	77910231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7234.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	6.86629443795352	7.07159853561729	6.60911907915012	5.88460328023017	6.59296694717472	6.29573290141112	6.1497576695488	6.06664063655255	-0.549902502274894	0.0762463248860629	0.298263009064823
Merged-chr3-27227572-3	chr3	27227491	27227691	+	886.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	B4A|SINE|B4	44587.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	3.71750343000424	3.71620035318431	3.35044143458468	3.67553259045797	3.22748954875072	3.19354983156878	3.27724512088302	3.62125328090663	-0.986022102356593	0.0697646902701908	0.282704594512622
Merged-chr7-145018355-2	chr7	145018290	145018490	+	824.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78465.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	2.62370352243284	2.69031725254627	2.70019208939781	2.67704911892299	2.85090270728599	2.95314323702581	3.48951502457928	3.13835672573665	1.96910597874805	0.00244549253248528	0.0273090230576985
Merged-chr8-121930201-4	chr8	121930111	121930311	+	816.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007608, intron 2 of 6)	RLTR20C2_MM|LTR|ERVK	14701.0	NM_007608	12352.0	Mm.116761	NM_007608	ENSMUSG00000025317	Car5a	CAV|Ca5a|Car5	carbonic anhydrase 5a, mitochondrial	protein-coding	4.43843382746945	4.65196354268126	4.77998460756305	4.92950018111248	4.25410018659366	4.03842781391387	4.5419215642094	4.39221208198694	-0.921679520658238	0.0195553459845879	0.126034948554598
Merged-chr11-119273551-3	chr11	119273512	119273712	+	756.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008064, intron 3 of 19)	intron (NM_008064, intron 3 of 19)	5649.0	NM_008064	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	2.76642401692633	2.94092568365291	2.97858412590936	2.72831340484004	3.47552399478107	3.21628961398007	3.30729001288083	3.10180653390601	1.807530351086	0.00197848131217628	0.0232142649071738
Merged-chr12-80325001-7	chr12	80324910	80325110	+	973.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-64629.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	4.31899421213233	4.47308582235844	4.53270162538129	4.80819525006567	4.43513439258273	4.53847106868432	4.10337665057943	4.40640203369725	-0.41592743585464	0.292253426862226	0.604630334853259
Merged-chr14-64916050-4	chr14	64915941	64916141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 1 of 9)	intron (NM_177338, intron 1 of 9)	33816.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	6.8689290016012	6.4441931507111	6.46513321165837	6.66510628148578	6.74535444444176	6.67688194445852	6.67186265969023	6.67168971506825	0.101755242801765	0.631258776972298	0.843325234348933
Merged-chr6-129400513-3	chr6	129400408	129400608	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019985, intron 2 of 5)	intron (NM_019985, intron 2 of 5)	3211.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	4.92979470402918	5.02732334094099	5.03326851886582	4.82782067249551	5.06363078225645	4.64748121874402	5.07226025278186	5.12465364601925	0.0947556773173345	0.77089168996077	0.910321191255463
Merged-chr13-60877458-4	chr13	60877357	60877557	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-13041.0	NM_178098	214639.0	Mm.19839	NM_178098	ENSMUSG00000050345	4930486L24Rik	AW545031	RIKEN cDNA 4930486L24 gene	protein-coding	5.18611315014768	5.62827534328736	5.81286886531632	5.19249598459421	5.63114527005264	5.36425823954589	5.25810405126155	4.70078830573987	-0.331791709923501	0.359598436476897	0.665436252718149
Merged-chr15-66833536-4	chr15	66833415	66833615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 43 of 47)	intron (NM_009375, intron 43 of 47)	-1686.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	5.48612646619418	5.4658525275106	5.94504610199313	5.63461883397979	5.26209024805029	5.16848470827345	5.25112599249065	5.53730483352911	-0.581977991584397	0.0473055392917903	0.223895271045305
Merged-chr13-46669479-4	chr13	46669385	46669585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033192)	promoter-TSS (NM_001033192)	-37.0	NM_001033192	97863.0	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding	5.89641518453545	5.75642937054935	5.51181256595758	5.43381931063926	5.96726608489115	5.8034762746794	6.17758314520597	5.80138998164024	0.490072117238474	0.0692947701627237	0.281525824509847
Merged-chr9-44267567-2	chr9	44267467	44267667	+	673.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163742, intron 1 of 9)	intron (NM_001163742, intron 1 of 9)	620.0	NM_001163743	270151.0	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	2.86234011924709	2.96778889691574	3.09510915150513	2.41035528171473	2.65696067596112	3.03713562906825	2.78788622968301	2.861221235483	-0.0742491567024358	0.915538911281273	0.968740064903965
Merged-chr10-93273581-4	chr10	93273543	93273743	+	913.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001322265, intron 2 of 4)	intron (NM_001322265, intron 2 of 4)	37516.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	3.48086353861676	4.00215770526696	4.22526121270682	3.7880114950113	3.56146811051723	3.72742931620442	3.95904752959487	3.97433108694749	-0.242549203151256	0.628494933582717	0.841555695467787
Merged-chr17-71203437-4	chr17	71203330	71203530	+	918.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	-1224.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.96002466415183	4.22609393248329	3.8459887061199	4.01244644141121	4.60492430779761	4.50934686476549	4.3195431247428	4.11349160959872	0.948176047475018	0.022170850550373	0.137214065848622
Merged-chr5-64505453-4	chr5	64505348	64505548	+	745.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28440.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	3.6637116356888	4.12461547335445	3.54429210384091	3.95288764957342	3.84812079993233	3.99631034826117	3.85908109075912	3.66226966423122	-0.015075398381549	0.974984786010003	0.991066521241374
Merged-chr13-45107628-2	chr13	45107486	45107686	+	799.5	f0_balb.idr|f1_balb.idr	Intergenic	ID_B1|SINE|B4	-105490.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	2.74556392274989	2.89320365304471	2.80574986769019	3.21326283633527	2.51772322321523	2.41635832845808	2.46887203304991	2.47378761342326	-2.67547277109951	0.00103141126979933	0.0137842325897571
Merged-chr1-166379136-4	chr1	166379048	166379248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030245)	promoter-TSS (NM_030245)	-19.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	8.32730581285104	8.43473473259465	8.31773230448901	8.08844093304707	8.38668244219028	8.39258973048393	8.24549319755901	7.98866211300685	-0.0348054097310957	0.842593274286583	0.940251336238462
Merged-chr11-76406854-4	chr11	76406780	76406980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291161)	promoter-TSS (NM_001291161)	-45.0	NM_001291161	56322.0	Mm.18803	NM_019818	ENSMUSG00000020843	Timm22	Tim22	translocase of inner mitochondrial membrane 22	protein-coding	6.92323801606425	7.0657910029245	6.4581121472449	6.40120628791728	6.85108222813329	7.07492793595815	6.59430853893715	6.57480759098847	0.0748879227800161	0.767946417810272	0.909224339615052
Merged-chr5-21547211-4	chr5	21547126	21547326	+	957.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199632, intron 11 of 20)	intron (NM_001199632, intron 11 of 20)	3699.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	4.61952729042336	5.04618418929906	4.62024406461067	4.9575725605227	5.29254595879616	4.8824900267401	5.07108971214402	4.74370604078588	0.370505288322876	0.294339404413619	0.606614080475317
Merged-chr10-42679880-4	chr10	42679785	42679985	+	869.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172416, intron 1 of 5)	intron (NM_172416, intron 1 of 5)	969.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	3.76360408011646	3.76656144105939	3.76410991676878	4.18717795492697	3.91285528033499	3.76769117126052	3.74947634426195	4.25548484935013	0.102370726710068	0.831834419445365	0.935652057925475
Merged-chr9-56266688-4	chr9	56266586	56266786	+	970.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 3 of 6)	intron (NM_172924, intron 3 of 6)	-105616.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	5.13204131820789	4.89927147300338	4.74444485474567	5.1176226148511	5.0679228801218	4.99946283041268	4.94691668869034	4.89644229654633	-0.0207387559111541	0.948560938776997	0.981488065587328
Merged-chr10-80901014-4	chr10	80900939	80901139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013895)	promoter-TSS (NM_013895)	-70.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	8.73746849933617	9.15394515194574	8.41288013453713	8.75269162880444	9.09579814994852	9.25298984055107	8.85563294019246	8.7203997872872	0.254776515392015	0.208658653553604	0.513007192521551
Merged-chr16-36072065-4	chr16	36071978	36072178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027342)	promoter-TSS (NM_027342)	418.0	NM_001159421	381045.0	Mm.310434	NM_198645	ENSMUSG00000075229	Ccdc58	A930007B11Rik|AI413631	coiled-coil domain containing 58	protein-coding	6.0633362254559	5.73837940656645	5.33166766956825	5.369645643231	5.80804142548735	6.17861596497885	5.80367299105582	5.68302662193428	0.37582065241626	0.212842290320618	0.517816171020324
Merged-chr3-152346840-2	chr3	152346740	152346940	+	943.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355666, intron 1 of 21)	CpG	362.0	NM_001076676	170822.0	Mm.258320	NM_133247	ENSMUSG00000025437	Usp33	9830169D19Rik|AA409780|Vdu1	ubiquitin specific peptidase 33	protein-coding	4.34102660864811	4.1620692197013	4.50468923481327	4.3595726019369	4.28786595561992	4.55532288313541	4.08695297827651	4.4229654739227	-0.00115076092118262	0.997661532833196	0.999032258328017
Merged-chr17-32536513-4	chr17	32536404	32536604	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024442)	promoter-TSS (NM_024442)	-53.0	NM_001356302	70101.0	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	5.462948872062	5.28228214893767	4.80231973364367	5.03776987655398	5.43190675670122	5.69013706594255	5.46300709052278	5.68362918810291	0.719666231128932	0.018597815803514	0.121995570092924
Merged-chr12-69184076-4	chr12	69183879	69184079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025589)	promoter-TSS (NM_025589)	88.0	NM_025589	66483.0	Mm.379115	NM_025589	ENSMUSG00000049751	Rpl36al	2410038A03Rik|RPL36A	ribosomal protein L36A-like	protein-coding	7.3105371505135	7.58526947399189	7.80344623713652	7.21647029793834	7.56555635108318	7.43448938787352	7.53571239748788	7.54130561203169	0.0417728088703798	0.83472370531338	0.937023697648579
Merged-chr8-82459204-3	chr8	82459113	82459313	+	862.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56627.0	NM_008357	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	2.90672007071008	2.82510823378627	2.90701837660836	2.33193918851593	4.41575821255072	4.20789098488464	4.05027440145815	3.71116366113277	8.01080681590139	2.42701876511608e-16	4.89384613830587e-14
Merged-chr15-59145803-4	chr15	59145713	59145913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63787.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	5.58338340477266	5.57871218636035	5.71476670168855	5.7929419414197	5.66220035280922	5.34859539243694	5.78057646254505	6.07350394900251	0.106802768724768	0.705161332719238	0.881587544161158
Merged-chr12-33119206-2	chr12	33119106	33119306	+	580.0	f0_balb.idr|f1_c57bl6.idr	non-coding (NR_015602, exon 5 of 6)	non-coding (NR_015602, exon 5 of 6)	-26331.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	3.13862988876192	2.87328073682805	3.08495403851303	3.06890578924352	2.97815143357157	2.87871022303761	2.89765358731583	2.84086145533411	-0.613545803038833	0.306985626494451	0.619287657993402
Merged-chr1-66863323-4	chr1	66863212	66863412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007381)	promoter-TSS (NM_007381)	-3.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	7.221297222978	7.29240812090274	7.57411194541253	7.69482960409993	7.3110386712283	7.17937452644745	7.61094589533357	7.07441085485588	-0.210771527653524	0.323996061266387	0.635512843920044
Merged-chr11-67636602-4	chr11	67636476	67636676	+	751.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277080, intron 3 of 12)	intron (NM_001277080, intron 3 of 12)	40021.0	NM_001277079	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	3.1637874608924	2.89327021709844	2.98448206236565	2.94560285473978	3.11375809256106	3.09369965638621	3.09534362109987	3.26945442847349	0.603651409269456	0.284510821468815	0.596324963525583
Merged-chr15-103274827-6	chr15	103274763	103274963	+	889.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019817, intron 1 of 8)	intron (NM_019817, intron 1 of 8)	1975.0	NM_001357748	56447.0	Mm.29473	NM_019817	ENSMUSG00000060992	Copz1	5930435A22Rik|AA407760|D4Ertd360e	coatomer protein complex, subunit zeta 1	protein-coding	3.76554364070722	3.85210639251813	3.9212797099242	3.88981871098176	3.72597716977832	3.94029938603775	3.9974921590048	4.10005158806851	0.225079116448611	0.608180627641021	0.8303806010247
Merged-chr5-138659106-4	chr5	138659000	138659200	+	834.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36241.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	3.97849569741526	4.09584387031994	3.5117649658252	3.78613889375209	3.91548334414227	4.15225199613036	4.05591558765709	4.3925856857736	0.738938764739445	0.109708915553642	0.365740014881858
Merged-chr5-137030235-4	chr5	137030149	137030349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039385)	promoter-TSS (NM_001039385)	-46.0	NM_001039385	381677.0	Mm.389697	NM_001039385	ENSMUSG00000037428	Vgf	Gm1052	VGF nerve growth factor inducible	protein-coding	6.25421956727977	6.29655026445029	6.31246911930777	6.08481252465905	6.4060931369221	6.41223348912802	6.45292694159795	6.64808309600781	0.377897894946302	0.0862490912045545	0.320179621510847
Merged-chr5-125306561-4	chr5	125306461	125306661	+	977.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	PB1D9|SINE|Alu	34533.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	4.70359207523194	4.72088464209742	4.25538265198038	4.82714209051243	4.72868324987624	4.63056276471653	4.71927357316572	4.87776041582568	0.174825433233607	0.63067077729529	0.84299854006688
Merged-chr11-48818518-4	chr11	48818417	48818617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1126.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	6.44551730284539	6.66874307632457	5.99481153913098	5.74841570393458	6.42377462642188	6.71678040465975	6.07631630065142	6.24599501826247	0.193057126956945	0.517035771953092	0.778636851191553
Merged-chr16-91880693-4	chr16	91880597	91880797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	50933.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	6.71890445079016	6.94002050705463	6.9686934802651	7.2373475842729	6.76590164225663	6.48922574991196	7.29854136222633	6.69994803255353	-0.192889846378116	0.436226228917152	0.72505818409614
Merged-chr4-135973242-4	chr4	135973156	135973356	+	815.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011942)	promoter-TSS (NM_011942)	-662.0	NM_011942	26394.0	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	3.67571617889571	3.49009868124623	3.39232403013623	3.68737501928795	3.54851474624301	3.68682476782131	3.50024668481941	3.94752880979187	0.326295466874062	0.512447280327985	0.775836940008879
Merged-chr18-4924200-3	chr18	4924103	4924303	+	905.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111717.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	3.52313865549573	3.49111499294069	3.9475776778391	3.99436695958918	3.27691704718204	3.09266280472676	3.50981810346802	3.57630846746401	-1.28683164549845	0.023681298329635	0.143084534690618
Merged-chr14-45318712-4	chr14	45318601	45318801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015774)	promoter-TSS (NM_015774)	-129.0	NM_015774	50527.0	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	7.20928980514408	7.746356991059	7.90584979970491	7.52999836879494	7.05721522435766	7.17697663072759	7.2733704963341	7.38681951911416	-0.530452601220539	0.0124205304882136	0.0920150853060525
Merged-chr17-87449055-3	chr17	87448959	87449159	+	874.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2124.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	3.60992877260814	3.38036256474587	3.50914505453261	3.79818398838674	3.52652591278047	3.10876305752426	3.26792386191456	3.45342131959316	-0.798029598827407	0.149146212875078	0.431184018629893
Merged-chr12-4107584-3	chr12	4107494	4107694	+	765.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153082, exon 7 of 7)	3' UTR (NM_153082, exon 7 of 7)	25020.0	NM_153082	217378.0	Mm.271656	NM_153082	ENSMUSG00000020657	Dnajc27	AI639580|C330021A05Rik|Rabj|Rbj	DnaJ heat shock protein family (Hsp40) member C27	protein-coding	3.28474579801086	3.42797140786665	3.28518907023566	3.13686106693689	3.09732819923906	3.1507570777082	3.21634107384536	3.22668397153424	-0.422395783797159	0.440866899846653	0.728186407949713
Merged-chr9-58954614-3	chr9	58954533	58954733	+	948.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008684, intron 7 of 28)	LTR41|LTR|ERVL	81808.0	NM_001042752	18007.0	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	4.0421530686446	3.95586208531114	4.1312169001914	4.39207800681043	3.5858647526459	3.45102370964178	3.66121559793249	4.28838820077278	-0.988157159230556	0.0586959956929999	0.255000139003421
Merged-chr2-105428208-3	chr2	105428143	105428343	+	728.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28924.0	NM_009037	19672.0	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	3.42498213382958	3.48271218896564	3.4791657641204	3.63975206028683	3.57510329966506	3.07905123485021	3.46528057007056	3.1836032656601	-0.560351410392388	0.314789430446779	0.626768725941007
Merged-chr4-132567571-4	chr4	132567482	132567682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	3515.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	7.93856460814632	8.3948096764219	7.85313485563057	7.1785775013899	8.04204561363373	8.42568159321842	7.69776182947996	7.54447072762455	0.0822599958345677	0.769283517892897	0.909742530773464
Merged-chr7-132859253-4	chr7	132859150	132859350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198017)	promoter-TSS (NM_198017)	25.0	NM_198017	109359.0	Mm.274824	NM_198017	ENSMUSG00000030965	Abraxas2	AA589499|AI853413|Abro1|C430003P19Rik|Fam175b	BRISC complex subunit	protein-coding	6.27279137480558	6.02674346404315	5.81967110456087	5.92556717484608	6.33895304263774	6.21083779824086	6.3119846310913	6.26940738433998	0.418636678490437	0.0743537813793559	0.293902345659128
Merged-chr13-90527198-4	chr13	90527082	90527282	+	853.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	378173.0	NM_001145879	435376.0	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding	4.17600928709654	3.6236657584617	3.81231239946488	4.17242564502988	3.83104794919126	3.63518775019494	3.98991073218141	3.861763729887	-0.38977898518834	0.414878699537967	0.70937233232864
Merged-chr14-25780805-4	chr14	25780710	25780910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-11954.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	5.80060189512541	6.22378931322832	6.2289035652895	6.52413279897235	5.64590794272637	5.92611793398471	5.82174665335469	6.04970625885471	-0.596225910084246	0.0297456926751868	0.166308118680946
Merged-chr13-64403676-3	chr13	64403531	64403731	+	565.166687	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-28922.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	3.47954639176253	3.30716975802452	3.53401297750996	3.42919492965933	3.69895165272601	3.4780208617198	3.46657859333824	3.53203317490933	0.386608564713316	0.433647372753129	0.723192669927953
Merged-chr14-34311248-4	chr14	34311141	34311341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029389)	promoter-TSS (NM_029389)	514.0	NM_008133	14661.0	Mm.10600	NM_008133	ENSMUSG00000021794	Glud1	AI118167|Gdh-X|Glud|Gludl	glutamate dehydrogenase 1	protein-coding	5.85645588089623	5.80199530150198	5.78568787412079	5.80990891358052	5.81687929200032	5.93627838560964	5.93830857763885	5.96446619223929	0.156643978644255	0.51487638956396	0.777296530332344
Merged-chr10-4601245-4	chr10	4601158	4601358	+	946.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10731.0	NM_001302532	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	4.71323817703413	4.68196361621714	4.30505895886208	4.86624866376544	4.74183225007725	4.38426899231619	4.33331999245401	4.03772486710818	-0.567205374195113	0.17558263325616	0.47032648424841
Merged-chr3-127791002-4	chr3	127790919	127791119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356430, intron 1 of 2)	intron (NM_001356430, intron 1 of 2)	362.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	7.8587724693612	8.17117898725675	8.35789932207157	7.90862411541529	7.53229017471534	7.64825686808399	7.46256513493357	7.12481333108452	-0.822589918214339	5.27981683387316e-05	0.00118739994444947
Merged-chr10-117715372-4	chr10	117715279	117715479	+	963.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D_MM|LTR|ERV1	-4621.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	6.43991568472805	6.88370276906367	6.16162261012702	4.76762170487441	6.67373189409064	6.97749347975117	6.19023618100702	6.04860973454648	0.348955192912419	0.594512687749385	0.823444611817736
Merged-chr7-19308739-4	chr7	19308616	19308816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347586, intron 1 of 4)	CpG	1329.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	8.46584545217376	8.17499058636062	8.45198519212951	8.46664811569562	8.42190182889906	8.70898138590031	8.74980607899988	8.58173411337484	0.279465689912027	0.0897435943638737	0.327163088513504
Merged-chr14-79394736-4	chr14	79394642	79394842	+	986.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3030.0	NM_145960	211253.0	Mm.35306	NM_145960	ENSMUSG00000022022	Mtrf1	A830062K05Rik|MtRF-1	mitochondrial translational release factor 1	protein-coding	4.69157187748765	5.27119989351067	5.04885437112579	5.31312783165228	5.46872684369913	5.29022875964767	4.71549632218711	5.23780701016836	0.181332639266585	0.611320457671272	0.832251855180034
Merged-chr4-43656542-4	chr4	43656440	43656640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026871)	promoter-TSS (NM_026871)	-95.0	NM_026871	68917.0	Mm.25285	NM_026871	ENSMUSG00000028470	Hint2	1190005L05Rik	histidine triad nucleotide binding protein 2	protein-coding	7.81028930705132	7.79795785161708	7.76556368997034	7.73350064848176	7.54985620344234	7.87050812888815	7.86075401905394	7.54791457618718	-0.0835069384290773	0.632883816800657	0.844244404806198
Merged-chr18-82751416-4	chr18	82751324	82751524	+	967.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7615.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	4.85338339025972	4.50431446217239	4.58393522337032	4.71623938738757	4.94812701401938	4.80098290039097	4.83083459947443	4.81570266102678	0.378581622386532	0.258703759521664	0.570489393947544
Merged-chr7-97579713-4	chr7	97579593	97579793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177947)	promoter-TSS (NM_001177947)	-196.0	NM_001177947	66273.0	Mm.41583	NM_183251	ENSMUSG00000035642	Aamdc	1810020D17Rik|1810037D19Rik|LI2	adipogenesis associated Mth938 domain containing	protein-coding	7.62465052665703	7.87832636228581	7.76091321194303	7.84458642955405	7.90206804134214	7.99308333245562	7.94875517460161	7.87742104930034	0.186212095134366	0.25279713662352	0.564035088324416
Merged-chr18-35094143-4	chr18	35094027	35094227	+	761.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24785.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	3.28910457122702	3.13044460575078	3.46839726151839	3.41858801422903	3.66707725274481	3.40306203708281	3.70379595895021	3.71822509543037	0.965522408666537	0.0607740613884959	0.260498429216654
Merged-chr10-75781207-6	chr10	75781084	75781284	+	871.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133994, exon 1 of 5)	5' UTR (NM_133994, exon 1 of 5)	230.0	NM_133994	103140.0	Mm.5731	NM_133994	ENSMUSG00000001665	Gstt3	AI118089	glutathione S-transferase, theta 3	protein-coding	4.70193598400899	4.68361431701386	4.66513551371596	4.71342711133062	4.23092049137061	4.49616053368468	4.9137103412459	4.49984831324918	-0.309256151682103	0.409894121559193	0.70525942551561
Merged-chr4-59888189-4	chr4	59888065	59888265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 6 of 8)	intron (NM_172468, intron 6 of 8)	26891.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	6.59954088013447	6.2146319123451	6.62982615326135	6.84806768799124	5.94607034460121	6.14115039745595	6.02497782552035	6.24088863559356	-0.774832931511879	0.00172932495302971	0.0208842247763322
Merged-chr17-62558389-4	chr17	62558297	62558497	+	970.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	322920.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	5.11702189924508	4.79018452821026	5.18360138458293	5.65019228414221	5.25717814137419	4.86554110793351	5.56182574346259	5.18003274074226	3.56177520893964e-05	0.999922027789497	0.999936075978934
Merged-chr4-70409844-2	chr4	70409744	70409944	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313762, intron 1 of 33)	intron (NM_001313762, intron 1 of 33)	591.0	NM_001313762	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	3.04888957161319	3.11243083986898	3.11208803305637	2.91849137206653	3.20465792359489	3.28414049649334	3.27078083088551	3.28238413577665	0.856279687429257	0.114886692217378	0.375098383805364
Merged-chr9-44462170-4	chr9	44462129	44462329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7462.0	NM_009476	22269.0	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	6.08433788051591	6.17453743502602	6.06404398523389	6.47356364517826	6.27324657438887	6.10497716869459	5.94439637464532	6.22116967870405	-0.12493912232517	0.613039871264238	0.833073655409938
Merged-chr13-113693601-3	chr13	113693512	113693712	+	760.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29936.0	NM_019960	56534.0	Mm.41410	NM_019960	ENSMUSG00000051456	Hspb3	2310035K17Rik|AI844863|Hsbp3|spb3	heat shock protein 3	protein-coding	3.69210197924728	3.55648155340885	3.69261355926268	3.78277704678932	3.66810916167656	3.63961988310912	4.03810958636537	3.63668409823282	0.200293492569792	0.672726107122281	0.865331277628611
Merged-chr3-103915087-4	chr3	103915033	103915233	+	926.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001356556, exon 1 of 8)	exon (NM_001356556, exon 1 of 8)	1013.0	NM_172684	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	4.22395964631901	3.96613646040266	4.2246322408291	3.75197490295942	3.8598126661892	4.26271202884629	4.0240517708211	4.34365902094047	0.229570173065231	0.608818741448045	0.830795214768321
Merged-chr12-73658647-4	chr12	73658550	73658750	+	943.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	Charlie1a|DNA|hAT-Charlie	73854.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	5.03458214851458	4.89333045333287	4.74894747318409	5.22450313628897	4.81901902215974	4.66440259891392	5.13177337123563	4.74587263050586	-0.297958811258126	0.389328558662889	0.689645309635064
Merged-chr4-141606079-4	chr4	141605984	141606184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133754)	promoter-TSS (NM_133754)	-32.0	NM_133754	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	7.36533500869054	7.31498540946484	7.32396476531876	7.12221771674455	7.8679476051118	7.9517800257274	7.91876596794961	7.84971059886187	0.822243860171491	1.17587782731331e-06	4.05709199565363e-05
Merged-chr11-49986827-4	chr11	49986739	49986939	+	782.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38492.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	4.21309102349915	4.19066743286905	3.50293552164344	3.63832270590577	3.54585564684573	3.97853503945736	3.93749304706268	3.99939589754812	-0.128452684838705	0.803203869321383	0.924024146497742
Merged-chr1-191850334-3	chr1	191850242	191850442	+	919.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28869.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	4.03674653148121	3.6975752693527	3.94290306034801	4.54886557305777	4.25622223585661	3.59542706716034	3.53372565861651	3.83878668070169	-0.689224025932966	0.211927470676139	0.516740975730402
Merged-chr2-181241074-4	chr2	181240989	181241189	+	814.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183162, intron 1 of 18)	intron (NM_183162, intron 1 of 18)	938.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	3.41410383724707	3.29664324926071	3.22688710266501	3.35540211641347	3.51549096015248	3.6431857443398	3.70745913932083	3.67535092074809	1.01468187637901	0.0401080201541892	0.202098879127498
Merged-chr14-47358159-2	chr14	47358076	47358276	+	788.666626	f0_balb.idr|f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15684.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	3.64373707630326	3.49796393610991	4.20097417236586	4.51221582562435	3.19067934664365	3.08473145931029	3.12097018604597	3.27568460505019	-3.09825674316305	4.45408161246267e-06	0.000133770917760962
Merged-chr8-33797576-3	chr8	33797483	33797683	+	777.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286168, intron 5 of 7)	intron (NM_001286168, intron 5 of 7)	-49813.0	NM_001206849	72632.0	Mm.443483	NM_001206849	ENSMUSG00000094500	Smim18	2700090O03Rik|AI835723	small integral membrane protein 18	protein-coding	2.99165436846642	3.09714261030364	3.31514788213015	3.19032615019516	3.30690903759992	3.73871119447071	3.35908642344348	3.74729933782996	1.42013043737465	0.0112711817853123	0.0859238993570465
Merged-chr4-98109243-4	chr4	98109121	98109321	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 10 of 10)	intron (NM_010905, intron 10 of 10)	274044.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	4.87878224323442	5.55982697574268	5.12162720744133	4.75508141678961	4.826679344774	5.16373605904171	5.1571607047397	4.62588295552672	-0.295614620559689	0.430906544117524	0.721325279470979
Merged-chr9-90271676-4	chr9	90271594	90271794	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194334)	promoter-TSS (NM_194334)	-925.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	4.63939540807718	4.74396717985081	4.79670246459828	4.82737691282399	4.60158634809865	4.93231829049787	4.65944197567899	5.05800045656386	0.120262003853355	0.727012492008451	0.89133085313418
Merged-chr17-26601086-3	chr17	26600972	26601172	+	824.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	39560.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	3.54795972398919	3.26538767728263	3.74659540630171	4.14089094602442	3.32047714771402	3.14288687744072	3.48005609021881	3.43479885920493	-1.24494140029228	0.0341373500785537	0.182411555758835
Merged-chr11-82954506-4	chr11	82954428	82954628	+	878.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183201, intron 1 of 5)	MER89|LTR|ERV1	2426.0	NM_183201	327978.0	Mm.42147	NM_183201	ENSMUSG00000054404	Slfn5	AI956840	schlafen 5	protein-coding	4.04726068021128	4.3618838447892	4.77434261503151	4.16175050006578	4.3365898112395	4.52821722673819	4.42004994418457	4.83438729730078	0.416763209600875	0.317718097147281	0.629607072492171
Merged-chr13-37506267-4	chr13	37506188	37506388	+	995.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	160943.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	6.12563538286114	7.0106475716061	6.32372363562011	5.80026780457854	5.73196751219463	5.57134616462821	5.25288068419085	5.34777354546274	-1.43032810830168	3.33364408150794e-05	0.000794659919884975
Merged-chr4-102647222-4	chr4	102647062	102647262	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57319.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.40846155655666	4.01840508357812	4.40917084838791	3.97377979043626	4.38032855347285	4.62024367207338	4.11781219966118	4.5607249423363	0.546319733330173	0.187810073864181	0.486237705873442
Merged-chr1-39368842-3	chr1	39368750	39368950	+	815.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252219, intron 2 of 4)	intron (NM_001252219, intron 2 of 4)	999.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	3.21563483490013	3.33773532777849	3.51987862313522	3.35318721007977	3.29090789299652	3.63819862646676	3.39349744023404	4.00652009680656	0.811828421084923	0.134901370321942	0.408839148894254
Merged-chr1-152756639-3	chr1	152756533	152756733	+	697.600037	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081197, exon 2 of 2)	exon (NM_001081197, exon 2 of 2)	6082.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	3.06285504470808	2.85200338388726	3.11744039843233	3.06047178838036	3.1847344594722	2.7062015181727	2.67299927129193	2.88399765180571	-0.591497940799739	0.376412564504945	0.679172347306585
Merged-chr2-170147850-4	chr2	170147687	170147887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5112.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	5.13432058986622	4.93765451703788	5.52760309414457	5.54361927254561	5.42837497003114	5.38054470702073	5.47362561000785	5.62332907798235	0.270596263465702	0.383399840852969	0.685301023974684
Merged-chr6-86792985-2	chr6	86792887	86793087	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013471, intron 1 of 12)	intron (NM_013471, intron 1 of 12)	597.0	NM_013471	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	2.85521666898142	2.74893794281182	2.79842998814481	2.58455556742881	2.76107808788488	2.64383552713589	2.46131011540286	2.60861070248225	-0.584296875608581	0.389901746323196	0.690126025603507
Merged-chr8-115487016-3	chr8	115486929	115487129	+	852.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57E1|LTR|ERV1	219865.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	3.85235694548636	4.43578381809425	4.35651566084743	3.48455930789179	4.06934019244103	4.08515775886293	3.89151197813829	4.10376562873697	-0.120229010652855	0.811670638574992	0.927200527094129
Merged-chr9-62838050-4	chr9	62837963	62838163	+	976.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033175)	promoter-TSS (NM_001033175)	-724.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	4.45722634345282	4.4540229300367	4.16675272713927	4.69628497604345	4.36744066130379	4.40038410479725	4.70834101919585	5.03698529085142	0.401089992634537	0.327114007469676	0.63867529942819
Merged-chr6-124448627-1	chr6	124448527	124448727	+	549.0	f0_balb.idr	intron (NM_001346656, intron 12 of 17)	intron (NM_001346656, intron 12 of 17)	14117.0	NM_001346656	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	3.56034399433502	3.46848943096303	3.27505464431582	3.19435972642856	3.52640224290667	3.51180495794372	3.49430919268905	3.60896485940394	0.558535757357111	0.270319648089249	0.582168027784025
Merged-chr6-72025669-4	chr6	72025569	72025769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046180, intron 1 of 2)	intron (NR_046180, intron 1 of 2)	16859.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	6.45203715857777	6.99404368046737	6.30262375746755	6.44318663813004	6.85571504684156	6.85584942680184	6.56981045319873	6.44856339235278	0.173492958388756	0.486340984718549	0.760100660715873
Merged-chr4-43025602-4	chr4	43025510	43025710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_020035, exon 1 of 10)	5' UTR (NM_020035, exon 1 of 10)	164.0	NM_020035	56703.0	Mm.143738	NM_020035	ENSMUSG00000028454	Pigo	PIG-O	phosphatidylinositol glycan anchor biosynthesis, class O	protein-coding	5.92082813703237	6.38287731352195	6.29234212051704	6.02147846425176	6.14547695883184	6.16735834927267	6.16808950305774	6.09534400998761	-0.0274727122623004	0.909108345910231	0.966201647731837
Merged-chr6-6307789-1	chr6	6307689	6307889	+	659.0	f0_balb.idr	intron (NR_136905, intron 1 of 3)	intron (NR_136905, intron 1 of 3)	59130.0	NR_136905	101056138.0	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	2.93325549064575	2.92865774211448	3.20080819257565	3.24095449665294	2.44927379950574	2.77838543033432	2.51339189016933	2.74072910407067	-2.4867524074662	0.00118003246139434	0.0153558906596957
Merged-chr7-45082910-10	chr7	45082819	45083019	+	986.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026555)	TTS (NM_026555)	9294.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	3.81834440971051	3.62554620007955	3.72211192770044	3.79434803918197	3.56274839565659	3.55581140157963	3.70684045085428	3.6685959183817	-0.37948818215016	0.416547342620543	0.710584286504404
Merged-chr7-139295837-4	chr7	139295737	139295937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47355.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	6.12020069188199	5.88942757700775	6.16227022710773	6.19629771195008	6.39701919677395	6.27645631307596	6.35086344999612	6.27329863669303	0.342797345584893	0.131474888431513	0.403720926819097
Merged-chr1-191964351-4	chr1	191964239	191964439	+	932.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-13031.0	NM_001177900	74023.0	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	4.81182331693658	4.66038700265595	5.09343634139477	5.05983204431976	4.55132159675045	4.48559548282473	4.2860199253711	4.49362183797704	-0.998385421301006	0.0061848699785535	0.0554798815631329
Merged-chr19-23140254-4	chr19	23140156	23140356	+	858.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010638)	promoter-TSS (NM_010638)	-970.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	4.08161682668878	4.25177039177938	3.61143163989319	3.94057855272407	3.80283941305216	3.72992131644008	4.14761352761022	3.89135190642731	-0.249382542536302	0.596741286550942	0.824946763915719
Merged-chr10-128731163-4	chr10	128731084	128731284	+	837.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016811, exon 11 of 24)	exon (NM_016811, exon 11 of 24)	12892.0	NM_016811	13139.0	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	3.8309989323642	3.78656448419036	4.03471981401744	3.85427820662835	4.13610459736758	4.20521841614865	4.14939788117711	3.98445973609424	0.659053622186501	0.113922280126596	0.373318991031321
Merged-chr10-29231816-4	chr10	29231722	29231922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20179.0	NM_001162537	212448.0	Mm.132789	NM_001162537	ENSMUSG00000004360	9330159F19Rik	-	RIKEN cDNA 9330159F19 gene	protein-coding	5.83974421447301	6.04097785018436	5.88736508777671	5.96975861890969	5.83386365850211	6.12824419509093	5.6873368443187	5.65873304663805	-0.166573439829424	0.514274050713185	0.776963161444587
Merged-chr10-67113112-4	chr10	67113018	67113218	+	740.141663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-14140.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	4.08698003428691	4.10058279555228	4.08763233084327	3.06190040850324	4.14622871603679	4.12059166320973	3.87723025286167	3.99185129785142	0.336869794103524	0.547926858468277	0.797125170218736
Merged-chr5-24426767-4	chr5	24426670	24426870	+	982.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253892)	promoter-TSS (NM_001253892)	-751.0	NM_001253892	20535.0	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding	4.8976260702957	4.80649687787445	4.66601888746671	5.10638194121376	4.68208300363487	5.20192581138929	4.94372195105404	4.93025313620102	0.0942170797949931	0.786137741670343	0.916793615374021
Merged-chr2-90939955-4	chr2	90939870	90940070	+	974.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017368)	promoter-TSS (NM_017368)	-427.0	NM_198683	13046.0	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	4.87036614689499	5.40053049216399	5.37428745695808	5.20085019563989	5.17922164578754	5.33812713074881	5.31955886920981	5.12710714328654	0.021857699682283	0.943142267951647	0.979441844888902
Merged-chr17-28247819-4	chr17	28247723	28247923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	15069.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	5.48497197066763	5.53895589036967	5.64757228259705	5.88299113233569	5.42999223191426	5.37698090056137	5.6438931871829	5.74077431581993	-0.189606248767547	0.501541075294797	0.7692646023024
Merged-chr8-46886366-4	chr8	46886261	46886461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100526.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	7.23058395043307	7.43832538818217	7.73916670977736	7.38811714297574	7.10236548539755	7.31668624321426	7.27128437178943	7.41322906030255	-0.246784098492406	0.210049071358039	0.514518905489705
Merged-chr3-61367248-3	chr3	61367145	61367345	+	953.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028712, exon 1 of 1)	3' UTR (NM_028712, exon 1 of 1)	2738.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	3.4848130233302	3.69594643947282	3.68824774365971	3.68925987123419	3.47120255552516	3.28726032385388	3.29779182005275	3.36862164578034	-0.958853569101776	0.0622687058031843	0.264063682435562
Merged-chr4-116824747-4	chr4	116824626	116824826	+	749.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3218.0	NM_146256	242642.0	Mm.279897	NM_146256	ENSMUSG00000043155	Hpdl	A830048M07Rik|BC034099|Gloxd1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding	3.58938948359671	3.49104782690466	3.31706411273375	3.19311116914213	3.65696157792495	3.43042238000245	3.41988014173381	3.31542141205823	0.245654189685062	0.641375433959596	0.848684971999741
Merged-chr3-81120870-4	chr3	81120724	81120924	+	781.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	84408.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	3.73876863809638	3.59747298558972	3.83689606091054	3.84483397096336	3.71751485083783	3.43886506619986	3.506115732501	3.96782576788732	-0.253737475805168	0.605835919555875	0.829156955046678
Merged-chr7-120842808-4	chr7	120842706	120842906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007908)	promoter-TSS (NM_007908)	-25.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	6.61693629751042	6.27618253875543	6.13529475122783	6.57806606852047	6.60112483701306	6.246808428758	6.46012763220068	6.50497361603885	0.058755010873279	0.803128327245313	0.924012336221154
Merged-chr3-27317732-3	chr3	27317648	27317848	+	862.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009425, intron 1 of 4)	GA-rich|Low_complexity|Low_complexity	671.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	3.3612242876364	3.08584821065669	3.30487386958161	3.22071552402509	3.54221263088778	3.4179052320397	3.29257520242287	3.41414175434746	0.644384239735179	0.216243903514486	0.522755903011058
Merged-chr12-3834652-4	chr12	3834556	3834756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	27496.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	6.62799192419996	6.6337455279353	6.65914142898147	6.3578036829839	6.74766624654035	6.41930378312558	6.45146720084268	6.51353741215471	-0.0186421340920843	0.933025561133173	0.975869550884564
Merged-chr2-167015294-4	chr2	167015207	167015407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153065)	promoter-TSS (NM_153065)	-6.0	NM_153065	228889.0	Mm.295031	NM_153065	ENSMUSG00000017999	Ddx27	C86129	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding	6.41306930544671	6.26514033590698	5.61997381012948	6.09769873077783	6.12689707949815	6.45415446056976	5.56187777668789	5.97683357984607	-0.0975662841061601	0.747593543537763	0.900632334227107
Merged-chr18-9213569-3	chr18	9213497	9213697	+	917.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008058, exon 1 of 1)	exon (NM_008058, exon 1 of 1)	741.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	4.29775536815971	4.27249918554138	4.29847033753109	4.27715064337377	3.3436846450722	4.0119760351753	3.76160956463843	3.77418378598564	-1.57972105363667	0.00103333703897277	0.0138073769658424
Merged-chr15-27876618-4	chr15	27876513	27876713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 10 of 56)	intron (NM_001081302, intron 10 of 56)	149235.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	5.2267861511448	5.18564932858108	5.59389837324488	5.73108754664108	5.13836558156677	5.2319311479667	5.58949721943267	5.19104730208038	-0.30931605196569	0.330933190412802	0.642104407905452
Merged-chr6-97175927-4	chr6	97175846	97176046	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081111, exon 2 of 17)	exon (NM_001081111, exon 2 of 17)	3178.0	NM_001081111	232286.0	Mm.30893	NM_001081111	ENSMUSG00000030059	Tmf1	7030402D04Rik|Gm153|Tmf1`	TATA element modulatory factor 1	protein-coding	5.09679159893803	4.61018798413176	5.0335037909334	5.41478835211045	5.07906800587704	4.69587399945729	4.90707531939158	4.89126502053585	-0.349265888808508	0.335501847343539	0.645895274715759
Merged-chr4-32373356-4	chr4	32373219	32373419	+	990.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44116.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	5.2964485734946	4.78437451553235	5.36130664980349	5.49332558596668	5.85497427668026	5.44340418787108	5.91903451914511	5.98401755857429	0.927585762858041	0.00333951938647817	0.0347246857075302
Merged-chr2-129371148-4	chr2	129371035	129371235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008361)	promoter-TSS (NM_008361)	4.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	5.8104871264205	6.00601788258488	5.78593126850126	5.25661180936338	6.43822501068124	6.65704294434848	6.18757718046126	5.832418628738	0.914423023861917	0.00245932005338615	0.0274161224870748
Merged-chr4-150282190-4	chr4	150282056	150282256	+	878.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	240.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	3.542240831652	3.66404019805214	3.85935394872901	3.9456776044783	3.81449483141421	3.59649716347306	3.58777994162039	3.90283680521903	-0.110007964783084	0.819648421914506	0.930948039985942
Merged-chr15-84986737-4	chr15	84986649	84986849	+	995.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	1222.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	4.70994855082301	4.64224197888276	4.29991843702854	4.71930001993353	5.02685282378074	4.92238447098931	4.90234929264972	4.88960151293016	0.667691157921381	0.0510711593577193	0.234574049940189
Merged-chr4-132606043-5	chr4	132606046	132606246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32900.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	4.92553710380625	5.03257333383964	5.18145807850933	4.70625980578322	5.34103146403287	5.67440872093664	5.57179162910366	5.68810811011866	1.12337409138855	0.000224363300540617	0.00400234737739472
Merged-chr1-64200677-4	chr1	64200575	64200775	+	844.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79286.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	4.38447106870805	3.94899817547574	4.25221605769646	4.48623669962854	4.2655111385737	4.379751793601	4.365180937879	4.64672883019723	0.290399618043659	0.476968066580809	0.753241702412926
Merged-chr6-135362704-3	chr6	135362623	135362823	+	752.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010128)	promoter-TSS (NM_010128)	-208.0	NM_010128	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	3.93094468476342	3.71879696060192	3.79819953578282	4.36866640801747	3.12133345129853	3.09956363659425	3.34418322726737	3.21712870644041	-2.91886310676337	2.81109502935323e-06	8.91670824841059e-05
Merged-chr11-97363519-4	chr11	97363420	97363620	+	983.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138657, intron 1 of 9)	intron (NM_138657, intron 1 of 9)	969.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	5.51618786270286	5.4518905639712	5.1085923461355	5.24415735646879	5.20495607405887	5.06322880381603	5.21359853455781	5.20437209661919	-0.292419961582554	0.3264863273853	0.637972505574722
Merged-chr3-87816755-3	chr3	87816659	87816859	+	672.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011832)	TTS (NM_011832)	19808.0	NM_011832	23920.0	Mm.42041	NM_011832	ENSMUSG00000005640	Insrr	Irr	insulin receptor-related receptor	protein-coding	3.11927932021828	3.13028476534338	3.41135082898059	2.91296715232264	3.17666328459156	3.29724687821188	3.34408531439585	3.60245274282459	0.802511401610948	0.156722902192103	0.442814363890589
Merged-chr2-160237038-4	chr2	160236938	160237138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90456.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	5.90819563543951	6.08157474635061	6.20799910165804	6.55718922186112	6.20690738731382	5.70121643376768	6.24956265403397	6.04168355399996	-0.238857596955236	0.385076445677211	0.686491183006874
Merged-chr7-6937318-3	chr7	6937238	6937438	+	722.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360502, intron 5 of 7)	intron (NM_001360502, intron 5 of 7)	39324.0	NR_036631	116811.0	Mm.381671	NR_036631	ENSMUSG00000108043	Zim3	1700128I23Rik	zinc finger, imprinted 3	ncRNA	3.58360757845779	3.70200967163506	3.41614093271336	3.86355068087719	3.72096460279548	3.26292701095022	3.40418565616206	3.52861663191068	-0.521441795128541	0.32778400925463	0.639171090552293
Merged-chr17-23726397-4	chr17	23726312	23726512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023058)	promoter-TSS (NM_023058)	76.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	7.09867997789392	7.57639755866933	6.9581078015517	6.9166429589347	7.52852258794858	7.45829882884641	7.56734308613937	7.00659038592274	0.334195490151353	0.153409755395661	0.438043684985067
Merged-chr12-102175999-3	chr12	102175906	102176106	+	580.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172152, intron 2 of 16)	intron (NM_172152, intron 2 of 16)	47279.0	NM_172152	238384.0	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	2.46720000405906	2.37463803167603	2.46755127364975	2.59038604535033	1.97160238728351	2.15327150446714	2.05049520697495	2.20583175360224	-3.20951309151056	0.00181735972106924	0.0216934173379151
Merged-chr14-57684810-3	chr14	57684711	57684911	+	738.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-19855.0	NM_020506	57258.0	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	3.76189781925917	3.57282920039023	3.55180308527342	3.58115349745173	3.81636978081635	3.60803023642548	3.74658633515738	3.71082455600231	0.346217785695636	0.45490255134915	0.738600531546823
Merged-chr13-17781995-4	chr13	17781905	17782105	+	975.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027118, intron 1 of 13)	L1_Mus3|LINE|L1	23092.0	NM_001081058	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	5.0533279559103	4.94677745750632	5.08903716895534	4.08202309475943	5.68532230089917	5.51247030200116	5.33880040553323	5.44279464961132	1.24084263631782	0.00101981918209784	0.0136549491276415
Merged-chr4-88720468-4	chr4	88720373	88720573	+	904.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172871, exon 1 of 1)	exon (NM_172871, exon 1 of 1)	2035.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	4.48342140528119	4.28827488451021	4.07994291451796	4.84266042936704	3.82651642753198	4.09538328994562	4.50043625461463	4.31718077240257	-0.629940394354998	0.171200562559973	0.464294934178781
Merged-chr1-139422263-4	chr1	139422170	139422370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172643)	promoter-TSS (NM_172643)	-113.0	NM_172643	226470.0	Mm.119711	NM_172643	ENSMUSG00000033964	Zbtb41	8430415N23Rik|9430031N01|9830132G07Rik|AI316857	zinc finger and BTB domain containing 41	protein-coding	7.83885106790715	7.62584750487832	7.70404111067012	7.81284905984916	7.29580770184127	7.44667415408844	7.64227987740505	7.34047541458958	-0.417854922807703	0.0195452624308414	0.125991285355054
Merged-chr5-102033477-4	chr5	102033393	102033593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	36428.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	6.5844285825884	6.52149951663909	6.88209791372564	6.85729120909127	6.39099171948912	6.49850606847239	6.68711802465293	6.44659263681561	-0.319911635656877	0.145325388444032	0.424764350127399
Merged-chr2-51268696-2	chr2	51268596	51268796	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040636, intron 1 of 2)	intron (NR_040636, intron 1 of 2)	26865.0	NR_040636	329404.0	Mm.417725	NR_040636	ENSMUSG00000086349	Gm13497	A730015I17	predicted gene 13497	ncRNA	3.39082061635845	3.39155725245604	3.56876819695706	4.02371689689151	3.45595250564744	3.62825135013833	3.88909600521055	3.56683105805329	0.0126516157087664	0.981553917915052	0.993431155774023
Merged-chr18-60712309-4	chr18	60712207	60712407	+	971.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348100, intron 2 of 14)	intron (NM_001348100, intron 2 of 14)	15259.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	5.1543450187479	5.36176873474708	5.6283217925086	5.8065055123826	4.96054321270647	4.76002948638642	5.16298684514698	5.39622863297757	-0.790740734062989	0.0189485176914965	0.123352527964426
Merged-chr17-45752269-4	chr17	45752173	45752373	+	918.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	17767.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	4.71834469399169	4.47850340377204	4.7883242280934	4.46985881172556	4.39182414880447	4.52402662235776	4.69665616612424	4.56408616134786	-0.14684102539177	0.686764560245885	0.871908413750359
Merged-chr11-98202870-5	chr11	98202862	98203062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109626)	promoter-TSS (NM_001109626)	-343.0	NM_001109628	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	5.86755137166383	5.88830773154952	6.02464966823614	5.79746293198435	5.78992332469375	6.21975425365065	5.79066129694933	6.23185959680367	0.201581048940038	0.435749847130991	0.724813945806151
Merged-chr18-39612166-4	chr18	39612068	39612268	+	849.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124923.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	3.83974044019916	3.75225954314615	3.94377110452616	4.25560050968861	4.23836032765836	3.78495467182558	4.15264877475634	4.0829210695911	0.269534292678553	0.561045200551997	0.804849597634179
Merged-chr3-100420059-3	chr3	100419969	100420169	+	821.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6336.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	3.81001739299856	3.70944439100792	3.86050857030823	4.35804069220371	3.54541209826181	3.43899117214474	3.84408858707891	3.90619720453403	-0.809047146931899	0.118444523223089	0.380772479972676
Merged-chr4-96553640-3	chr4	96553541	96553741	+	903.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010008)	promoter-TSS (NM_010008)	10.0	NM_010008	13110.0	Mm.98200	NM_010008	ENSMUSG00000052914	Cyp2j6	-	cytochrome P450, family 2, subfamily j, polypeptide 6	protein-coding	4.87591264225176	4.73982013859824	4.7582421987282	4.65400775190291	3.43455048923373	3.70104456140972	3.76838488830103	3.84417988911789	-3.06005722096244	6.33185460644905e-10	4.2239463826845e-08
Merged-chr1-86487548-4	chr1	86487417	86487617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-39040.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	8.13791282071224	8.26612322021358	7.98751724418733	7.72215585535968	8.21591404311453	8.66701680948002	8.24112186129815	7.97514114317539	0.330762689781552	0.112908174325155	0.371420623567672
Merged-chr1-105866899-4	chr1	105866806	105867006	+	987.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86183.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	6.25115095618434	6.72531686292796	6.4252379934557	5.87186640456052	6.01450619710975	6.3519144194344	6.10415303964909	5.34315340455818	-0.532163465858233	0.0964203839844389	0.340246220397024
Merged-chr5-38039252-4	chr5	38039146	38039346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289535)	promoter-TSS (NM_001289535)	16.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	5.57194289075454	5.43362962914264	5.51799189177982	5.7258170992988	5.70893883955184	5.63621896440171	5.54493697186832	5.67205182209657	0.109449740750356	0.6806257890653	0.868928920613391
Merged-chr2-36136751-4	chr2	36136663	36136863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026434)	promoter-TSS (NM_026434)	-59.0	NR_027515	67889.0	Mm.205937	NM_026434	ENSMUSG00000026889	Rbm18	2010004P11Rik|AU015530	RNA binding motif protein 18	protein-coding	6.78944233433033	7.17894986245167	7.340266323578	7.09268548577387	7.18811186285325	7.39232597577656	7.1008431017347	7.3644552682146	0.202175988191075	0.319432396203044	0.631272275763354
Merged-chr9-109000931-4	chr9	109000825	109001025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 3 of 13)	intron (NR_153430, intron 3 of 13)	9023.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	5.23622264593957	5.31787998797823	4.8050006768798	4.76099269853975	5.40922658873527	5.52605062615905	5.04951766237533	5.35011967331266	0.561855025004746	0.0892999280695251	0.326113569342811
Merged-chr12-108990647-4	chr12	108990582	108990782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 3 of 6)	intron (NM_177602, intron 3 of 6)	77535.0	NM_001163175	380785.0	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	7.45335173890851	7.14822951821357	7.67144217408241	7.72969945580032	7.20812545069962	7.20863242887913	7.52615971887453	7.47755285268798	-0.220354391635611	0.292692779953969	0.605082030273404
Merged-chr8-95149526-3	chr8	95149410	95149610	+	939.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6970.0	NM_001145831	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	3.81286049208795	3.9488959922211	3.70687501528955	4.15896478879984	3.28446725840904	3.98526287444049	3.79752763376373	3.81118892129014	-0.546873069759379	0.289735150008772	0.601799242536239
Merged-chr15-73000030-4	chr15	72999935	73000135	+	794.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_180662, exon 8 of 22)	exon (NM_180662, exon 8 of 22)	55777.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	4.33832926166409	4.69325391544807	4.19963556719675	3.81579572422087	4.37286221003553	4.42370820861882	4.69375081220123	4.14722422230216	0.303793840093879	0.497732192108776	0.767160446248674
Merged-chr10-88623711-3	chr10	88623609	88623809	+	907.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18557.0	NM_175418	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	4.12800257803288	4.24913107300154	4.62259068822363	4.72833263630791	4.26438624073471	4.14858179261443	4.06077084207117	4.1754036154324	-0.730512854764179	0.0827031989566969	0.312376280102878
Merged-chr8-8983316-3	chr8	8983203	8983403	+	619.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	148985.0	NR_045854	71249.0	Mm.158635	NR_045854	ENSMUSG00000108848	4933430N04Rik	-	RIKEN cDNA 4933430N04 gene	ncRNA	2.80657572746101	2.75684422995501	3.07246997375264	2.96120726315751	2.42948602259938	2.49685718922842	2.53905291255721	2.47117349834444	-2.44866076955656	0.00150918836093401	0.0187670367475405
Merged-chr17-46546356-4	chr17	46546255	46546455	+	902.408325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081335)	promoter-TSS (NM_001081335)	33.0	NM_001081335	78309.0	Mm.329076	NM_001081335	ENSMUSG00000040327	Cul9	1810035I07Rik|Cul-9|Parc|mKIAA0708	cullin 9	protein-coding	4.68127188980978	4.29622725171447	4.29692491695253	4.78337751903281	4.56162035378314	4.73833995333085	4.54497669152323	4.71530404076824	0.194567457517252	0.608422579495679	0.830668663775255
Merged-chr2-146517076-4	chr2	146516968	146517168	+	925.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5064.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	4.39756912731686	4.52697407977218	4.61867666025731	4.46056259323378	5.04975788053467	4.66744101009832	4.94581935430173	4.69421976904462	0.765282217658784	0.0274411260209639	0.1579390239384
Merged-chr2-77288296-3	chr2	77288200	77288400	+	862.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7708.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	3.85910102101295	3.80326830302427	3.1336537574431	3.39445138129887	3.80670575440079	3.45445161486826	3.39006198156794	3.5169640840872	-0.0648762940396478	0.909337102095403	0.966300488035004
Merged-chr17-22225646-4	chr17	22225575	22225775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205095)	promoter-TSS (NM_001205095)	-61.0	NM_001205095	240038.0	Mm.227945	NM_001205095	ENSMUSG00000096433	Zfp994	EG240038|Gm4944	zinc finger protein 994	protein-coding	6.12404160871544	6.01683365550667	6.41801040893484	5.81822725005675	7.33947146863941	7.26293689508847	7.30738213469674	7.18679076990824	1.70019933960912	5.07960316948995e-15	8.25481904112157e-13
Merged-chr5-121330535-1	chr5	121330435	121330635	+	649.0	f0_c57.idr	intron (NM_181421, intron 49 of 75)	IAPLTR2a|LTR|ERVK	54874.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	2.09502294211168	2.05388384320446	2.09517528262485	1.84431913552989	2.65315362263215	2.59174769256708	2.65432064051081	2.8797060909045	6.63942662715021	3.83061115719192e-10	2.65749582414974e-08
Merged-chr9-96325735-4	chr9	96325635	96325835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	37980.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	5.27750082401938	5.14967015625425	5.24602544370063	5.09528837854326	5.72812196806282	5.32255718896243	5.42963104394943	5.96917750729896	0.803201299966344	0.0067951904540975	0.059597474667191
Merged-chr6-66896377-4	chr6	66896288	66896488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177557)	promoter-TSS (NM_001177557)	-9.0	NM_001177559	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	7.2799634902949	6.93383563794693	7.30164555349661	7.22617238506497	7.03339855995671	7.17024057251774	7.30495416601663	6.94862663815374	-0.10078151679669	0.611959600135863	0.832680684364583
Merged-chr13-91223174-4	chr13	91223068	91223268	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 1 of 7)	intron (NM_025770, intron 1 of 7)	819.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	4.43597996434929	3.95047990030909	4.63125179290771	4.55606005972991	4.66562917238702	4.22924704204342	4.64422016424041	4.30125196382958	0.1356083674239	0.746769898576919	0.900253617240193
Merged-chr17-24692594-4	chr17	24692485	24692685	+	964.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023040)	TTS (NM_023040)	-2636.0	NM_011522	20974.0	Mm.26032	NM_011522	ENSMUSG00000007021	Syngr3	-	synaptogyrin 3	protein-coding	5.16776925458328	4.79080299702382	4.88228440713347	4.96168432864666	4.62343319686956	4.86602209543418	4.89382598175751	4.80556294992789	-0.331131938184267	0.318517023223564	0.630382961101907
Merged-chr9-90198825-6	chr9	90198822	90199022	+	909.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003911, intron 23 of 23)	intron (NM_001003911, intron 23 of 23)	35944.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	4.38689140378916	4.1879160361807	4.22991314957252	3.26637438951241	4.0116665694884	3.84697495708621	3.88017916427734	4.34704302650914	-0.135377830798584	0.803092156342368	0.923989034972282
Merged-chr15-98728146-3	chr15	98728000	98728200	+	990.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357893)	promoter-TSS (NM_001357893)	98.0	NM_024169	66120.0	Mm.30729	NM_024169	ENSMUSG00000003355	Fkbp11	1110002O23Rik|FKBP-11	FK506 binding protein 11	protein-coding	4.14552882032602	4.14788299968054	4.14618442934815	3.96716053236359	3.79346370379184	3.61912285271755	4.08468260608043	3.80703088040434	-0.723054259849048	0.107506065864305	0.361596709531563
Merged-chr13-55369760-4	chr13	55369653	55369853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016758)	promoter-TSS (NM_016758)	21.0	NM_016758	51791.0	Mm.1426	NM_016758	ENSMUSG00000052087	Rgs14	RPIP1	regulator of G-protein signaling 14	protein-coding	6.74772082334851	6.59661692707888	6.53114916361555	6.4650929359304	6.73231722987741	7.05956528046236	6.70024314416186	6.72975230485096	0.326668980578991	0.12224213818734	0.38741395063409
Merged-chr1-144268175-8	chr1	144268049	144268249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-19045.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	5.94169849927203	5.5793623085879	5.96359416609122	5.72884731129763	5.48636132904509	5.78359596896867	5.68372581757232	5.80566962662431	-0.193402049529305	0.469033318491504	0.748076114999735
Merged-chr17-22353012-3	chr17	22352896	22353096	+	757.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355280, intron 4 of 6)	intron (NM_001355280, intron 4 of 6)	8404.0	NM_176962	319615.0	Mm.442162	NM_176962	ENSMUSG00000033972	Zfp944	6330416L07Rik	zinc finger protein 944	protein-coding	3.95495206030904	3.84394697702256	3.68612057919472	3.9863465609877	4.16915303597977	3.6785602048727	4.23694345617466	4.04684245455675	0.473174407549093	0.297279317941851	0.609413183911728
Merged-chr8-35496146-3	chr8	35496090	35496290	+	795.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026067)	promoter-TSS (NM_026067)	-657.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	3.61105293221632	3.80504676794763	3.93986393159255	3.5488580023819	3.34299085914435	3.67441630994298	3.48669771074004	3.37626491779888	-0.840060435688433	0.100169761787286	0.347346591038986
Merged-chr15-53386914-4	chr15	53386805	53387005	+	924.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40722.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	4.53966571134335	4.46790939303354	4.82021425647657	5.0129189806736	4.50132498027041	4.71776148624491	5.02420987432269	4.98463443388288	0.15135200400205	0.689809995834153	0.873623035418265
Merged-chr10-60351443-4	chr10	60351330	60351530	+	916.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	4579.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	4.25381435967172	4.20996880086682	4.69727488546251	4.53967686619806	4.59266949458564	4.28079080831541	4.37161683060801	4.43103262729221	-0.0300294080220452	0.938801897748945	0.977799606257435
Merged-chr13-12258192-4	chr13	12258094	12258294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081128)	promoter-TSS (NM_001081128)	-81.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	8.31605982758804	8.3171219718978	8.45582754369574	8.49089411391971	8.44035817982394	8.54467239677422	8.62025380816145	8.40934991864473	0.131353793301249	0.389786319502545	0.690041185689413
Merged-chr5-100846395-4	chr5	100846302	100846502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172715, intron 1 of 12)	CpG	173.0	NM_172715	231510.0	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	6.01246034499877	6.11090024236572	6.13199066954179	6.2282200124586	5.25569773599277	5.7794192191374	5.60085996290195	5.83171932086137	-0.826340388486103	0.0020372626138655	0.0237216285935436
Merged-chr10-94771613-4	chr10	94771465	94771665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029852, intron 13 of 15)	intron (NM_029852, intron 13 of 15)	82775.0	NM_029852	77048.0	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	4.7071129412141	4.56323150269032	4.74352627291495	4.35019502842109	4.40127000768725	4.13315044724217	4.68524150602798	4.87328677992806	-0.0816926233870661	0.838147515481073	0.938587552380782
Merged-chr9-21918242-4	chr9	21918133	21918333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324531)	promoter-TSS (NM_001324531)	-50.0	NM_001324531	19340.0	Mm.260157	NM_031874	ENSMUSG00000019066	Rab3d	C130057E11Rik	RAB3D, member RAS oncogene family	protein-coding	7.84016712305852	7.76986844233127	7.44656083373403	7.67376327044231	7.70112672217422	7.8326453517261	7.57550651579996	7.14169070271022	-0.134080969303623	0.517837503308362	0.779098618642696
Merged-chr14-70076195-2	chr14	70076105	70076305	+	591.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-1240.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	3.5818738891031	3.73170063716522	3.52278403410073	3.41156659155347	3.72381304392592	3.81370313792285	3.9621009034546	3.97799292054653	0.944041028286891	0.0421343349520113	0.208081581041366
Merged-chr11-114884129-4	chr11	114884020	114884220	+	930.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5921.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	4.77855805732686	4.74453701498151	4.74396793703746	4.60771979890362	4.47988259868504	4.764422416059	4.48766405046085	4.36889028183444	-0.40381919408946	0.256813138021432	0.568540132844846
Merged-chr5-66016325-4	chr5	66016209	66016409	+	894.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001127382)	TTS (NM_001127382)	-12024.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	4.17738416260714	4.00452216354687	3.76864002134178	3.80091877255381	4.3261067878775	4.00610022335707	4.20184720865345	4.33947741121754	0.759619798960765	0.0725152455458171	0.289480232923888
Merged-chr1-36069355-4	chr1	36069266	36069466	+	866.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	966.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	3.9340630233026	3.33695468491607	3.68319541022544	3.75878451690007	3.78973191195986	3.74505034918251	4.00425009281936	3.9769922261628	0.53939141782065	0.264375449156576	0.576455127446606
Merged-chr2-13278286-3	chr2	13278190	13278390	+	736.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 66 of 66)	intron (NM_001081084, intron 66 of 66)	-6875.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	3.43533105849814	3.26549443533046	3.54133349281229	3.51275614985782	3.39642062924126	3.60401987785635	3.3670533545607	3.31917870086087	-0.0755642186546671	0.882851069056234	0.95585014745834
Merged-chr13-41084674-4	chr13	41084585	41084785	+	825.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4979.0	NM_001145802	17152.0	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	3.82005938026553	4.22226277880068	3.87440603644614	4.06737010380219	3.71361170056001	4.09867491199408	4.17948163091005	3.87222031234862	-0.108962660963572	0.809934033057314	0.92673441581447
Merged-chr2-158176553-4	chr2	158176469	158176669	+	976.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-15439.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	4.81971420055344	4.4351280889102	5.0140439771005	4.73181290599303	4.69817783457919	4.39068810916389	4.72616800352529	4.74557652866916	-0.230786663070285	0.526813252773739	0.78394239517028
Merged-chr6-24989399-4	chr6	24989282	24989482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33257.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	6.93219902573334	6.33932483276	6.5940042513286	7.08362417581877	6.20717449720892	6.41410465620093	6.49654331533443	6.23113006545157	-0.644006358279802	0.0108081055240519	0.0835208058947447
Merged-chr7-141092446-4	chr7	141092294	141092494	+	957.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023059, exon 7 of 10)	exon (NM_023059, exon 7 of 10)	8152.0	NM_023059	24058.0	Mm.38017	NM_023059	ENSMUSG00000025494	Sigirr	AI256711|TIR8	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain	protein-coding	4.48144669868951	4.35172226746115	4.095877040298	4.33276834602237	4.25687171963463	4.16870847813103	4.21946339883962	4.04250279257472	-0.359565793121041	0.367012174364816	0.671401463905863
Merged-chr13-40978854-4	chr13	40978737	40978937	+	989.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155347, intron 1 of 4)	MER2|DNA|TcMar-Tigger	-22173.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	5.93238330288033	5.63133154272725	5.72743859059327	6.38153747823379	5.66097950694456	5.74578669942728	5.1894285127834	5.50727207943728	-0.701576018713393	0.0248417644024317	0.147794378836567
Merged-chr10-121409807-3	chr10	121409705	121409905	+	929.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_138956)	TTS (NM_138956)	44715.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	4.05083608307548	3.64639670717034	3.49389371299032	3.60756327146642	3.43865115382236	3.35175121718894	3.42200724570862	3.70602796720497	-0.726120032956937	0.163418816687979	0.453064888721415
Merged-chr10-111673039-9	chr10	111672963	111673163	+	978.607422	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78790.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	4.05251698356183	3.85125269041972	3.95241420423165	4.11467281232099	4.33614714949583	4.12671461267358	4.17200930444325	4.18813146848092	0.534881142851364	0.192603199268397	0.492306866509462
Merged-chr18-67270164-4	chr18	67270059	67270259	+	847.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19064.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	5.35512151242903	5.05566757656239	4.82376808292733	5.01440856171981	5.07540371466204	5.19033030879583	5.30186420777134	5.23878751598693	0.242161561568125	0.43570024300573	0.724787271556548
Merged-chr14-16240178-4	chr14	16240065	16240265	+	853.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001359883, exon 3 of 3)	3' UTR (NM_001359883, exon 3 of 3)	3166.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	4.70392419776063	4.63051685180218	4.58367194889981	4.03596103237234	4.74764782673606	5.05517656449134	4.85991458777226	4.84679981567844	0.82021507107002	0.0314111157839863	0.172609573873879
Merged-chr14-47418267-4	chr14	47418141	47418341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_144553, exon 1 of 19)	5' UTR (NM_144553, exon 1 of 19)	166.0	NM_144553	218977.0	Mm.240543	NM_144553	ENSMUSG00000037544	Dlgap5	C77459|C86398|Dap-5|Dlg7|Hurp|mKIAA0008	DLG associated protein 5	protein-coding	7.4785123155429	7.42022071926727	6.94323755341089	6.98846028899321	7.28598506655554	7.4850526288434	7.35066933288646	6.73109569738767	0.0236474027808515	0.921593896510465	0.9709178534782
Merged-chr7-5099960-3	chr7	5099875	5100075	+	823.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16936.0	NM_001145013	192658.0	Mm.28764	NM_138954	ENSMUSG00000035191	Rfpl4	D7Ertd486e|Rfpl4a	ret finger protein-like 4	protein-coding	4.41724096997549	4.57932185636798	4.41794740314247	4.70610832297349	3.96792365476873	4.37078628966878	3.91264368148666	4.24050106932785	-1.0245150654953	0.0123276749532158	0.091574992224478
Merged-chr9-20976465-2	chr9	20976365	20976565	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010333, intron 1 of 1)	CpG	328.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	4.66528344321465	4.57201238659292	4.85365027428465	4.64166172696588	4.58821448348087	4.84049220800212	4.89751142901393	4.98251700150189	0.303426221272551	0.375320510993188	0.678319587954097
Merged-chr12-35800743-3	chr12	35800659	35800859	+	649.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-105641.0	NR_045050	71581.0	Mm.100110	NR_045050	ENSMUSG00000113985	9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	3.38964956490339	3.47465252931991	3.92826670411728	3.53325632259326	3.39868130608712	3.44184435981345	3.49266146006642	3.55876296345618	-0.399892336038903	0.436525773499939	0.725172544914514
Merged-chr14-104027266-4	chr14	104027197	104027397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045953)	promoter-TSS (NR_045953)	-155.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	6.25779630237383	6.54834435206696	6.2589022394137	6.85014605672626	6.34568741960018	6.4160942754649	6.55380608320825	6.17289374391065	-0.214639456484046	0.392367041313247	0.691910951185106
Merged-chr11-83704556-2	chr11	83704456	83704656	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081957, intron 1 of 2)	intron (NM_001081957, intron 1 of 2)	500.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	3.16195399315024	3.28355072690983	3.16236294849178	2.97223741231913	3.54423931199288	2.94039430685891	3.03026317881803	3.03892027873701	0.107264359707589	0.860876606242164	0.947464761043248
Merged-chr5-96912323-5	chr5	96912170	96912370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-9002.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	4.6073420940968	4.1195525929885	4.46049320404595	3.83322899919983	5.77471560467021	5.28756435611441	5.64056693069882	5.55939420939576	2.68581782670274	1.05676502097017e-13	1.38017389775479e-11
Merged-chr2-155367823-4	chr2	155367754	155367954	+	973.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-10430.0	NM_001004721	228812.0	Mm.5434	NM_001004721	ENSMUSG00000038383	Pigu	5430426F17Rik|BC028278|Cdc91l1	phosphatidylinositol glycan anchor biosynthesis, class U	protein-coding	4.88408213746958	5.25350174663272	4.93151556678505	4.71657468691634	6.16235565490771	6.32311690273421	6.70006741771395	6.53246851440663	2.46673514650318	6.22650551945045e-18	1.58284441560344e-15
Merged-chr12-34225011-1	chr12	34224911	34225111	+	811.333313	f0_balb.idr	intron (NM_001271386, intron 19 of 27)	intron (NM_001271386, intron 19 of 27)	267340.0	NM_011658	22160.0	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding	2.98000661159914	2.92889727133172	2.64743493300143	2.94136725241113	2.18123802956462	2.30518821604933	2.28176259077629	2.2855944659091	-5.78683383702184	6.57819709353126e-07	2.38770775584121e-05
Merged-chr9-40192284-4	chr9	40192170	40192370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030713)	promoter-TSS (NM_030713)	-46.0	NR_153114	80902.0	Mm.132196	NM_030713	ENSMUSG00000025602	Zfp202	C130037E22Rik|Znf202	zinc finger protein 202	protein-coding	6.26070764730091	6.19106640543765	6.22395328899125	6.43994646837124	6.27206449407568	6.14657250815776	6.13344966674243	6.05567435699854	-0.204034219577764	0.373040069528752	0.67671796075698
Merged-chr10-120140417-4	chr10	120140320	120140520	+	928.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27455.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	4.683776963416	4.48107226615747	4.52243137679383	4.62980749201521	4.72894218426357	4.60998135034561	5.04828061592435	4.47572077995116	0.324037778396253	0.368119143027719	0.672579508228606
Merged-chr13-99191199-4	chr13	99191102	99191302	+	867.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	6379.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	4.42599166955987	4.0012264600495	4.79274819724236	4.51118936516983	4.2601214656095	3.78003408592398	4.05481078073049	3.84867017779809	-1.12565981234706	0.0165632292982175	0.112549317252298
Merged-chr5-41550151-2	chr5	41550016	41550216	+	761.25	f0_c57.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	157575.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	3.02092375047337	3.00756412955861	3.36611453866564	3.12809962451018	3.35224307274963	3.4859963228828	3.8073350381406	4.15997758102178	1.9980366257871	0.00059450657706645	0.00887321946928347
Merged-chr2-32487355-4	chr2	32487242	32487442	+	910.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-35872.0	NM_146118	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	4.31289475721942	3.96480653509513	4.68202726575776	4.09577256821675	4.04949703693028	4.64336548108347	4.06244907447577	3.97098219786454	-0.192932028355681	0.676844555259103	0.867299984077957
Merged-chr4-119000195-4	chr4	119000069	119000269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38202.0	NM_133892	100470.0	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	6.72650170106549	6.97079267159379	6.28802921735288	6.01753929576976	7.24371652639773	7.52399658140771	6.85932575046383	6.51330862322497	0.76103994733039	0.0120981770427031	0.09047448452643
Merged-chr8-107294408-4	chr8	107294299	107294499	+	979.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286260, intron 1 of 12)	CpG	929.0	NM_133957	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	4.5237847024422	4.71654905215691	4.94048138656957	4.6159367371165	4.6575896199255	4.51449525671983	4.78139045140357	5.08840523917871	0.15535552302292	0.666270644830432	0.861914264044268
Merged-chr2-38486116-4	chr2	38486013	38486213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25584.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	5.79962052780789	5.91495266027586	5.59063428374928	5.88935966697554	5.88392021985373	6.04558066968327	5.64492204802275	5.95534114336579	0.120403523718716	0.639040384802855	0.847417964618581
Merged-chr9-25251975-3	chr9	25251884	25252084	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001205367)	promoter-TSS (NM_001205367)	-7.0	NM_001359736	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	5.88475939609917	6.30441146252969	6.52991734910234	6.03540387318618	6.04337486001144	6.47095921738543	6.26312839443516	6.52523947433603	0.190838637284191	0.465781271411613	0.746206100403026
Merged-chr3-135607888-3	chr3	135607798	135607998	+	850.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 13 of 24)	MER44A|DNA|TcMar-Tigger	83649.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	3.86077209219059	3.66557420368974	3.81131336192488	3.57709378740942	3.93223142540436	3.76717718380681	3.74409291250619	4.12320580576797	0.526449004418156	0.248262893768674	0.559336071774142
Merged-chr13-23739764-4	chr13	23739654	23739854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_015786)	TTS (NM_015786)	947.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	7.62929847291719	7.56917623249318	7.88130408849007	7.84129781421881	7.54730457532464	7.52775435618338	8.0142187950565	7.81796146119785	0.000952247186283749	0.996088846629332	0.998543856884531
Merged-chr13-113379082-4	chr13	113378997	113379197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123747.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	6.91082499394041	6.60267260386589	7.2631699576122	7.22763638427152	6.69228524998978	6.8590363644983	6.79601200516741	6.97122780819507	-0.287146864042472	0.209644384474955	0.514168095492496
Merged-chr13-94301236-7	chr13	94301118	94301318	+	949.897949	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15387.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	4.52801280441628	4.25920616152275	4.56557898956981	4.84862071810736	3.98990706486384	4.10228163626981	3.90393800704466	4.32385755765873	-1.2101153769729	0.00434110735755921	0.0427557327526923
Merged-chr18-80224496-4	chr18	80224400	80224600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025299, exon 4 of 4)	3' UTR (NM_025299, exon 4 of 4)	17633.0	NM_001042408	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	7.86064348483438	7.78143168068294	7.81471641418988	8.26461911390752	6.32127918395046	6.46568093817728	6.65610189527458	6.34296652354285	-2.06267158027243	4.28187068381181e-22	1.90165664359774e-19
Merged-chr6-28622682-4	chr6	28622594	28622794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 10 of 23)	intron (NM_019776, intron 10 of 23)	142346.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	6.22162889718768	6.0129507751173	6.36426037666065	6.49976314013532	5.9645274542607	5.69637390147493	6.22752447383619	5.8762973906783	-0.523179960173473	0.0432431207397154	0.211631769358518
Merged-chr9-70842719-8	chr9	70842619	70842819	+	950.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	MIR3|SINE|MIR	92089.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	4.24676090684043	4.46548274139088	4.51920889864452	4.26852816614116	4.47904240126997	4.97804676936684	4.45712758474607	4.55644862433136	0.573073268847521	0.130827702663701	0.40263684918279
Merged-chr5-72263165-4	chr5	72263076	72263276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 11 of 22)	intron (NR_003966, intron 11 of 22)	59833.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	5.59840012627797	5.76236990640205	5.45279349870453	6.32623672401017	6.08069518405213	6.05166842852161	5.77796134481082	5.80322114913659	0.127644788321849	0.681998714590322	0.869682098720609
Merged-chr8-46869535-4	chr8	46869428	46869628	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117359.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	6.17566452621566	6.2612393782885	6.12147360427503	5.80269502366344	5.56097658483348	5.76826924195559	5.64448959248614	5.40153044295805	-0.801226447186344	0.00308091213952192	0.032641161287768
Merged-chr8-35375605-4	chr8	35375539	35375739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177741)	promoter-TSS (NM_177741)	-102.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	6.39404085633262	6.15437664218617	6.56854328653527	6.22668634901246	6.05884475639552	6.3498462339993	6.21997934906963	5.94987926266338	-0.285542637599209	0.236587444970588	0.546577661329488
Merged-chr18-56754906-3	chr18	56754827	56755027	+	964.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47114.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	4.13698772500005	3.50041403932932	4.09931294133316	3.86666026955782	3.37222646694012	3.43446597942235	3.56194635490716	3.68589754730825	-1.25702698591936	0.0158518520579252	0.109037396369449
Merged-chr7-125542766-4	chr7	125542668	125542868	+	905.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9514.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	4.22419989244189	4.52559256026537	4.3255689136017	4.480778774979	4.81281398484081	4.30040814178331	4.52704039013796	5.17450765459033	0.756159270005257	0.0607444612798248	0.260418599616735
Merged-chr4-86899398-1	chr4	86899298	86899498	+	794.333313	f0_balb.idr	intron (NM_001290541, intron 3 of 4)	intron (NM_001290541, intron 3 of 4)	24984.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	3.56557829859446	3.42529523065448	3.40929776577899	3.91596720387744	3.13892437933209	3.13474817169757	3.15565675920128	3.40744210385558	-1.43522978085542	0.0121843956346286	0.0908996013915975
Merged-chr8-117257368-5	chr8	117257300	117257500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163262, exon 1 of 21)	exon (NM_001163262, exon 1 of 21)	381.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	5.0033658905335	4.99763589257525	5.26790426621801	5.20278837661045	5.06447605628784	5.41091421413702	4.94342157874637	5.57809676888437	0.259270382117331	0.423310149987976	0.715220118828193
Merged-chr18-3004902-2	chr18	3004802	3005002	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	118510.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	3.13011917709528	3.39656727329421	3.35822682924144	2.92908183712821	2.94811787665962	3.11139200711729	3.05643594103416	3.50348644147316	-0.158536754405158	0.793855030640226	0.92022175040272
Merged-chr10-13961666-4	chr10	13961570	13961770	+	952.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-4405.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.60446001906352	4.96493687270933	4.69702274412429	4.82293975834976	5.34127566789051	5.37774730039706	5.29298270581553	5.34318746177533	1.04419823304286	0.000704604614044388	0.0101772722454106
Merged-chr11-102408649-4	chr11	102408549	102408749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1132.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	8.29248806244173	8.60262444349509	8.31643601186152	8.28473971737063	8.47997441273557	8.57545999409226	8.34298009333038	8.45895365933452	0.109300519544591	0.498594538910819	0.767743621017188
Merged-chr19-41825166-2	chr19	41825066	41825266	+	830.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4804.0	NM_008043	14296.0	Mm.4573	NM_008043	ENSMUSG00000067199	Frat1	AW060382	frequently rearranged in advanced T cell lymphomas	protein-coding	3.16884850610333	3.2767951865137	3.32754184414238	2.88283367991241	3.08724191861147	3.03150307987884	2.84503849007137	2.98729684414584	-0.713457499994151	0.24357903017897	0.554647038904281
Merged-chr7-43446405-4	chr7	43446299	43446499	+	908.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_075104, intron 1 of 5)	intron (NR_075104, intron 1 of 5)	2327.0	NR_075104	110826.0	Mm.30200	NM_026695	ENSMUSG00000004610	Etfb	0610009I16Rik|2810441H06Rik	electron transferring flavoprotein, beta polypeptide	protein-coding	4.32825730262544	4.58786100432853	4.37583648827705	4.69339048606534	4.56546748561412	4.59510053627075	4.64190264387023	4.58507749058736	0.159699469106438	0.661390145132541	0.859384613734741
Merged-chr15-66680156-4	chr15	66680036	66680236	+	843.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 8 of 47)	intron (NM_009375, intron 8 of 47)	9366.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	4.2094480485485	3.91463602720744	4.02929213501023	4.56824660259594	3.90834236821137	3.88088781908842	4.01222629230512	3.97748884234158	-0.73804430720434	0.104157713212974	0.354763224652419
Merged-chr7-24462431-4	chr7	24462346	24462546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011113)	promoter-TSS (NM_011113)	-37.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	6.25735508116425	6.37848184554764	6.0343992379136	6.20174644152551	6.0483009184682	6.21104983934785	6.24486160872976	6.27249491838991	-0.0528127248123504	0.818528036328326	0.930445174876607
Merged-chr4-123340402-4	chr4	123340299	123340499	+	948.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007558, intron 1 of 6)	intron (NM_007558, intron 1 of 6)	2853.0	NM_001256019	12163.0	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	4.36010645827009	4.61923843029152	4.45340747460346	4.54160375404981	4.59478277569528	4.86782145450607	4.81335865530719	4.57812191823283	0.457577501823245	0.19617447880353	0.497187225449757
Merged-chr2-109280712-4	chr2	109280624	109280824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139303)	promoter-TSS (NM_139303)	-14.0	NM_139303	228421.0	Mm.274086	NM_139303	ENSMUSG00000027115	Kif18a	AU024633|B130001M12Rik|gcd2	kinesin family member 18A	protein-coding	8.05045114617613	8.1492854126976	8.13674938644454	8.38955730771412	8.40480088199748	8.31440903424401	8.40411394799728	8.16870301555599	0.167587623416122	0.313496891582205	0.625420982817056
Merged-chr14-54686207-2	chr14	54686103	54686303	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_021437)	promoter-TSS (NM_021437)	32.0	NM_021437	58248.0	Mm.197509	NM_021437	ENSMUSG00000040822	1700123O20Rik	MNCb-2990	RIKEN cDNA 1700123O20 gene	protein-coding	5.86077008833064	6.09021573680571	5.52229322243357	5.83270660766621	5.94634861907085	5.989826284941	5.63524222515999	5.65978242892372	-0.0390015170024902	0.885689541197459	0.957074477803157
Merged-chr6-128381434-4	chr6	128381344	128381544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027697, intron 2 of 2)	intron (NM_027697, intron 2 of 2)	5934.0	NM_027697	71149.0	Mm.483176	NM_027697	ENSMUSG00000079304	Tex52	4933413G19Rik	testis expressed 52	protein-coding	5.68837344011708	5.58048165476162	6.12441936191019	6.08758972450432	6.14867725712153	4.88549079856045	5.37243872170324	6.13821799210219	-0.247492547249151	0.667789794230948	0.862676450816977
Merged-chr4-95716330-4	chr4	95716226	95716426	+	877.229126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 6 of 10)	intron (NM_029347, intron 6 of 10)	136905.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	4.13747574432374	4.71782410719421	5.03397144817668	4.87092801643674	4.8458913160928	4.71428631206098	4.47469189563864	4.61946068216232	-0.12837885685292	0.747892940163633	0.900749096242085
Merged-chr4-86670036-4	chr4	86669937	86670137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007408)	promoter-TSS (NM_007408)	22.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	7.11637929027708	7.86069020364519	7.67698169720062	7.67701243659335	7.36780095269482	7.59575895186903	7.38161787917804	7.42311859364946	-0.230786224049944	0.269128938873913	0.580670771145992
Merged-chr11-115061722-4	chr11	115061639	115061839	+	850.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172050, intron 1 of 3)	intron (NM_172050, intron 1 of 3)	300.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	4.28664085222171	4.8026987022275	4.42643980335845	3.88234917140979	5.02331307988669	4.51316202542338	4.64400137806972	4.28467211854136	0.587157058004691	0.189389609902721	0.488251009184518
Merged-chr19-11517571-4	chr19	11517466	11517666	+	912.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027209)	promoter-TSS (NM_027209)	-993.0	NM_027209	69774.0	Mm.436639	NM_027209	ENSMUSG00000024677	Ms4a6b	1810027D10Rik	membrane-spanning 4-domains, subfamily A, member 6B	protein-coding	5.3534878636825	4.57882816524387	5.51980707065677	5.07830965243059	4.721787260985	4.8867430787891	4.68576198837215	4.47625575891677	-0.941075028498681	0.0139908845442568	0.0999555526423419
Merged-chr3-67576954-4	chr3	67576839	67577039	+	844.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5829.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	3.64395299913514	4.11316034885797	3.85923338190168	3.40004609739311	4.10431119661737	3.64089017102172	4.10654453725103	3.58299275339173	0.310327377182679	0.553098487766326	0.799974396526481
Merged-chr17-86447318-4	chr17	86447208	86447408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 2 of 14)	intron (NM_011104, intron 2 of 14)	-160130.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	7.2422558493309	7.16902414008028	7.00345900384034	7.36687633138427	6.98592211275621	6.73312501097096	6.94274035538876	6.97307235580438	-0.405918729224604	0.0395028507791292	0.200165115022177
Merged-chr9-45314170-4	chr9	45314075	45314275	+	971.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4925.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	4.9810806106706	4.97408847948448	4.74817953837691	4.91651599141218	6.31904218304847	6.35085722165508	6.09115347961771	6.34825676292303	2.28230897724061	4.67273720010005e-17	1.05253405432254e-14
Merged-chr3-122619095-3	chr3	122618990	122619190	+	955.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114665, intron 1 of 15)	CpG	624.0	NM_153118	214459.0	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	4.32991853648086	4.06717620908585	4.37386466272817	3.88244157328139	4.38621415500805	4.41499934046758	4.74786858320777	4.37105004119309	0.787821224955762	0.0528448530115121	0.239782412796905
Merged-chr7-13054775-4	chr7	13054660	13054860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290453)	promoter-TSS (NM_001290453)	4.0	NM_001290452	109889.0	Mm.10103	NM_145819	ENSMUSG00000030380	Mzf1	Mzf-2|Mzf2|Zfp121|Zfp98|Znf42	myeloid zinc finger 1	protein-coding	7.89767126555351	8.03177880768983	7.9565217542909	8.16093692907228	7.97109528697002	7.99290992189059	8.33215911178703	7.78618952676713	0.0182717217172215	0.920602591156276	0.970534411124792
Merged-chr8-67997080-3	chr8	67997000	67997200	+	870.4722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-22526.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	3.54409081741161	3.31008155936987	3.73037102560321	3.18916708863064	3.03167200637042	3.44251946019073	3.37147440957585	3.26474026964496	-0.608236941702504	0.285847903843579	0.597485194899797
Merged-chr2-130178927-3	chr2	130178721	130178921	+	898.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009225, intron 1 of 6)	CpG	543.0	NM_009225	20638.0	Mm.88216	NM_009225	ENSMUSG00000027404	Snrpb	AL024368|AU018828|SM-B|SM11|SMB|SNRNP-B	small nuclear ribonucleoprotein B	protein-coding	3.66376833979795	3.83924629829887	3.72551878189683	4.01123078435504	4.26689653141345	4.21491705829014	4.23989783240286	4.1322191892914	1.00058266707122	0.0225116432713737	0.138588470838572
Merged-chr10-7470250-4	chr10	7470157	7470357	+	914.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029975, intron 1 of 5)	IAPEY4_LTR|LTR|ERVK	3220.0	NM_029975	77777.0	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	4.60090384351009	4.58038020590369	4.44718524616181	3.90048223941877	4.43509700163027	4.57825438706401	4.38519022176282	4.0660832933984	-0.0492576893315571	0.909969336694923	0.966625985592668
Merged-chr4-120955841-4	chr4	120955740	120955940	+	978.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4139.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	4.88993961672711	5.36552105496097	4.8513293443526	5.21291292659255	4.88918041786719	5.17743997255008	5.04689583672116	5.41879104732508	0.0583859656615231	0.862042055524582	0.947936227886533
Merged-chr1-95366426-4	chr1	95366329	95366529	+	865.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	52801.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	3.53487929191996	3.36666197098875	3.91608450505886	4.29038816412271	4.00554099095046	3.8313538459114	3.75108196689785	3.86576037919355	0.0694346791463335	0.898975533482741	0.962375626232471
Merged-chr10-68136670-4	chr10	68136564	68136764	+	996.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	142062.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	5.6592359810885	5.45791889562845	5.51056860531988	5.67559362822024	5.06711015626602	5.25116036799674	5.48277007749677	5.10529891923824	-0.631504694531788	0.0295135443666943	0.165425984288285
Merged-chr5-140740003-4	chr5	140739914	140740114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	15887.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	6.84282650493327	6.48284578045788	6.49614057728481	7.21042751402973	6.36258068381611	5.70548996236156	6.09937164904503	6.67734246018511	-0.786703055470345	0.00840005227570296	0.0694594936027255
Merged-chr13-5716961-4	chr13	5716871	5717071	+	980.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	141121.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	5.10706735300835	4.71565336026319	5.14037246350368	5.12171654002653	5.09895337698414	5.43388267392262	5.11511624925541	5.16843635171516	0.31882339328771	0.313756775894432	0.625737045999011
Merged-chr16-18235077-6	chr16	18234904	18235104	+	881.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172151, exon 1 of 11)	exon (NM_172151, exon 1 of 11)	132.0	NM_172151	27801.0	Mm.326263	NM_172151	ENSMUSG00000060166	Zdhhc8	D16H22S1738E|DHHC-8|E330009O14Rik|Op53c05|ZDHHCL1	zinc finger, DHHC domain containing 8	protein-coding	2.94466101601966	2.84992975135734	2.81812112449896	2.99082656174808	2.92329333118898	3.05243090199589	2.93464023189981	3.00257874408854	0.292777351031322	0.618968408125855	0.836212961868967
Merged-chr18-20640148-4	chr18	20640042	20640242	+	808.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	intron (NR_155534, intron 1 of 2)	-25108.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	3.78902038062887	3.82302537346975	3.42807216659762	4.15260778176974	3.78357950416897	3.96180298649073	3.82539458836625	4.0697783370561	0.199430666232449	0.689831293357806	0.873623035418265
Merged-chr5-30105078-2	chr5	30104978	30105178	+	937.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167879)	promoter-TSS (NM_001167879)	-118.0	NM_001167879	242915.0	Mm.332287	NM_001167879	ENSMUSG00000044576	Garem2	Fam59b|Gareml|Gm444	GRB2 associated regulator of MAPK1 subtype 2	protein-coding	3.14450126048966	3.28646311798632	3.88764394709332	3.00715110303988	3.26786244351573	3.05410669421563	3.0032786289336	2.94066176514994	-1.11052367081133	0.0877302395040716	0.323083129018021
Merged-chr10-115316025-3	chr10	115315945	115316145	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024454)	promoter-TSS (NM_024454)	-454.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	5.37395941364691	5.59056411779605	5.86948835896424	5.50174518539548	5.29619721945162	5.09016875390646	5.3778587167346	5.71359236933823	-0.35298449200195	0.24421396653369	0.555328922238245
Merged-chr3-55652540-4	chr3	55652442	55652642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 49 of 57)	intron (NM_030595, intron 49 of 57)	-129968.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	6.89831834680518	6.79164963281605	7.65320882327945	7.84737627907301	6.61531880899076	6.43181754374149	7.21007104068832	7.02529767417613	-0.722858463411955	0.016508219802353	0.112314908938222
Merged-chr8-77485204-6	chr8	77485092	77485292	+	806.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-31864.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	3.89920210953621	3.50526075185517	3.79743939120873	3.69568543840472	4.09962151144826	3.8635181113705	3.83356597814974	4.2394981948683	0.833032886719682	0.0667204684852522	0.27539710630772
Merged-chr5-117872728-4	chr5	117872612	117872812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 1 of 27)	intron (NM_008712, intron 1 of 27)	5873.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	7.55084798590909	7.81280147390471	7.74658992095178	7.48341384755369	7.70706731590565	7.96989160440458	7.65297691117396	7.39136261261457	0.0586809717542423	0.764167463968664	0.907542895815823
Merged-chr2-23015039-3	chr2	23014945	23015145	+	870.6555179999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	RMER17B|LTR|ERVK	25196.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	3.72158241292079	3.6391315490909	3.88809823813086	3.36832619043844	4.09684690223135	4.25273383230093	4.22841638512023	4.20629676808472	1.54424393897365	0.000576179737322245	0.00865047406092809
Merged-chr5-64813651-4	chr5	64813541	64813741	+	904.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	10118.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	4.262690695495	4.3451095284659	4.68598186172182	3.95529390308544	4.46512156942785	4.56465889109959	3.88349347907575	4.11645881944384	-0.0995561287614903	0.82769073345373	0.933903677361406
Merged-chr11-17185311-4	chr11	17185202	17185402	+	937.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 2 of 5)	L1_Mur3|LINE|L1	26004.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	5.26626602088911	5.53492782700326	5.40331743640139	5.63721721525575	4.80703549839419	4.74208885308229	4.58400522096003	4.50283083517903	-1.57262959464653	2.11174712578521e-06	6.86356386603951e-05
Merged-chr18-67775303-4	chr18	67775201	67775401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045376)	TTS (NR_045376)	425.0	NM_028112	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	6.7963444694521	6.91429976405188	6.63579272292395	6.800294645046	7.55080291041352	7.53045570477169	7.50614956311201	7.51284357975405	0.995048384978426	3.80419968852226e-08	1.80039314913116e-06
Merged-chr3-38237813-3	chr3	38237728	38237928	+	913.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29709.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	3.7981836399675	3.82168236676182	3.74732817949522	3.91201385830211	4.04798623831093	3.43074670812227	3.83193097554649	3.7452419568214	-0.0905708591091934	0.85122417617135	0.943894442930937
Merged-chr7-16308672-4	chr7	16308578	16308778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133234)	promoter-TSS (NM_133234)	-905.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	6.87709260303514	7.29620241704427	6.43926498833345	7.0468787903523	7.28634931927634	7.09584007364103	6.72886870617231	7.09903241512985	0.156488891625009	0.525969256447495	0.783434107700342
Merged-chr1-54921768-1	chr1	54921668	54921868	+	813.0	f0_balb.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	4619.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	3.78483567155206	3.31610364781566	3.31246913434926	3.76228231238794	3.35243144895547	3.54833110214114	3.53018179671152	3.43180188906319	-0.355486095459872	0.503625925537883	0.770507049123075
Merged-chr11-118479755-5	chr11	118479674	118479874	+	986.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153103, intron 3 of 13)	B1_Mus2|SINE|Alu	2942.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	3.83917964567498	3.43053836465242	3.43456088477402	3.02145993291903	3.00908824164286	2.95730125587946	2.98998845563289	3.53429868530011	-1.14949136436541	0.0773438487667245	0.300748815442531
Merged-chr9-66131568-6	chr9	66131452	66131652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359210, intron 1 of 3)	intron (NM_001359210, intron 1 of 3)	4941.0	NM_026635	68250.0	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	5.19942987489126	5.07637178359008	4.87416764865602	5.83807768435845	4.99896815244105	5.37496636399251	5.32425693706941	5.19673246880863	-0.181619828794132	0.618869003864871	0.836120703985271
Merged-chr4-138426884-4	chr4	138426787	138426987	+	938.4874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7785.0	NM_026689	68350.0	Mm.103413	NM_026689	ENSMUSG00000041241	Mul1	0610009K11Rik|AV000801|Gide	mitochondrial ubiquitin ligase activator of NFKB 1	protein-coding	4.98380585004416	5.25146137076424	4.46130909132744	4.68651784383927	5.12253028735066	4.8649680971624	4.62454405719312	4.98123811014967	0.0808176094559079	0.829419341792924	0.934551281935698
Merged-chr5-73134023-3	chr5	73133933	73134133	+	734.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028194, intron 5 of 62)	intron (NM_028194, intron 5 of 62)	122585.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	2.79744695881265	2.84179721406304	2.79782212484919	3.00353698393453	2.3792581498449	2.71331994557914	2.53180169907292	2.38690597969529	-2.04964798631396	0.00700565156337454	0.0609156208929192
Merged-chr19-41830388-4	chr19	41830340	41830540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008043, exon 1 of 1)	exon (NM_008043, exon 1 of 1)	470.0	NM_008043	14296.0	Mm.4573	NM_008043	ENSMUSG00000067199	Frat1	AW060382	frequently rearranged in advanced T cell lymphomas	protein-coding	4.26615346616922	3.96072756366569	4.35503450006764	4.00716514811372	4.34834143818907	4.64702042621791	4.0533378247593	4.68675929155202	0.737566097805018	0.0783865564035865	0.303051257305463
Merged-chr7-109859622-2	chr7	109859522	109859722	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020052, intron 2 of 21)	intron (NM_020052, intron 2 of 21)	6057.0	NM_020052	56788.0	Mm.40447	NM_020052	ENSMUSG00000007279	Scube2	4932442O19Rik|Cegf1|Cegp1	signal peptide, CUB domain, EGF-like 2	protein-coding	3.34461412833255	3.2812218542068	3.34503885747948	3.55250858466059	3.44915600380192	3.20193675449616	3.38805109708573	3.50432227916689	-0.00681860372739059	0.989670354259687	0.995854307446602
Merged-chr1-88699869-2	chr1	88699769	88699969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177305, exon 1 of 1)	3' UTR (NM_177305, exon 1 of 1)	2322.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	4.05158242902416	4.70444731174643	4.1585287352708	4.00506412530725	4.26963222429108	4.89704712777448	4.14075169321561	4.58707455808143	0.559912472333355	0.21601668561485	0.52240905990201
Merged-chr9-23651525-3	chr9	23651431	23651631	+	935.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	428455.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	3.34104985516157	3.20217360420717	3.13537504217121	3.38014060054077	2.80967205381527	2.69328166479542	2.88055477208993	2.81895432874243	-2.17243690517334	0.00110251248802244	0.0145325437749906
Merged-chr2-164085895-4	chr2	164085796	164085996	+	960.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021420, intron 3 of 10)	intron (NM_021420, intron 3 of 10)	11718.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	4.9080185391341	4.55194466454973	5.34158810428498	5.28014357600818	4.1258690507306	4.32613268100426	4.81449081207845	4.9724787482395	-0.938570471167386	0.0291690007613284	0.164192985780197
Merged-chr8-70609620-4	chr8	70609536	70609736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1322.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	7.97442161610718	7.96748625625814	7.96888089839032	7.79400106310767	8.02462091658142	7.89585430879409	8.03588969629264	7.93571696106031	0.0710943126956363	0.657149608844413	0.857123881679102
Merged-chr1-155099650-4	chr1	155099559	155099759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010500)	promoter-TSS (NM_010500)	-23.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	8.00720947832864	8.16405909709475	7.88044409269931	7.5091480222092	8.2333208549611	8.19962373176826	8.1164382158759	8.14972453228889	0.351241068482027	0.0671831959518117	0.276519257599953
Merged-chr10-96625320-1	chr10	96625220	96625420	+	558.0	f0_balb.idr	Intergenic	Intergenic	8319.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	3.2285161017237	3.50744838219847	2.77609645128727	2.83859185132287	2.83550218422817	3.22790778385581	3.042073867142	3.17119129369524	-0.179061163465794	0.785199883859399	0.916425455265614
Merged-chr7-12979232-2	chr7	12979132	12979332	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001168561, exon 2 of 5)	exon (NM_001168561, exon 2 of 5)	1384.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	3.3811664331602	3.1528432738392	2.98725797378738	3.03344866030063	3.54119548116062	3.31328845688825	3.71124896023075	3.72661580156481	1.56208118476934	0.00393324275360086	0.0395318110644671
Merged-chr12-110830752-2	chr12	110830652	110830852	+	839.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011973, intron 2 of 11)	(GGA)n|Simple_repeat|Simple_repeat	10187.0	NM_011973	26448.0	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	3.05466116373266	2.94721824281211	3.22242013340762	2.60314611019543	3.06561864087608	2.97278207980502	2.98325002349205	3.16716444098982	0.337738261704273	0.594462239810288	0.823413789941784
Merged-chr6-82048150-3	chr6	82048051	82048251	+	919.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	6523.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	4.66379550372251	4.1926661606945	5.29590942302979	5.24325334060549	3.18032981058077	3.62231953582097	3.4768569779849	3.40728763527331	-5.31449323731554	9.38887002482777e-11	7.21695874187058e-09
Merged-chr12-108334168-4	chr12	108334066	108334266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010010)	promoter-TSS (NM_010010)	-150.0	NM_010010	13116.0	Mm.41911	NM_010010	ENSMUSG00000021259	Cyp46a1	CH24H|Cyp46	cytochrome P450, family 46, subfamily a, polypeptide 1	protein-coding	7.06402707032745	7.07365917191856	6.9648716597371	6.82261364398839	6.07624312551843	6.29911969777597	6.15298386316383	5.68911869217667	-1.33229870974236	1.32177158814357e-08	6.86231800674481e-07
Merged-chr14-49140896-4	chr14	49140814	49141014	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-31332.0	NM_027492	70646.0	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding	4.79519385522399	5.07748946948212	4.93597160416189	5.10479675705721	4.31048010366208	4.5924435658909	4.53186906428926	4.89906466378059	-0.843399940158936	0.0190034775791268	0.123631160826676
Merged-chr6-55507749-2	chr6	55507649	55507849	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	55771.0	NM_007407	11517.0	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding	2.79416797511596	3.29134823750076	2.71707344421248	3.48750624528696	2.85292486236633	3.11352248327413	3.11483610581712	3.38898402766601	0.071308373210773	0.921728793231832	0.970941268050458
Merged-chr6-7844614-4	chr6	7844494	7844694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_052993)	promoter-TSS (NM_052993)	-630.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	8.8123557871109	9.01892363392824	8.91890622701436	8.84952017825457	8.96801177734786	8.9997515587111	9.28035810179878	8.61989811789904	0.107593990056667	0.541197290627662	0.793100056248944
Merged-chr17-29054056-4	chr17	29053950	29054150	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21390.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	5.926384485125	6.30399797875134	6.19777615407242	5.42265922234794	5.8859711561102	5.78846838831461	5.46735205325865	5.06702135460457	-0.655324353012254	0.0565172657419519	0.248999904570834
Merged-chr15-101248141-4	chr15	101248034	101248234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18712.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	5.17833495986128	5.34334401480321	5.43969892117041	5.70402610465679	5.62220889585245	5.52510682818082	5.81062819018732	5.81474895534264	0.414789706038325	0.152923937302189	0.437419043569042
Merged-chr9-85449689-4	chr9	85449586	85449786	+	888.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122536.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	4.44560295861959	3.96071076858864	4.60153397890859	4.61815187127257	3.74983309757451	4.61904583398882	4.38403524740774	4.59840995914988	-0.128313198592569	0.786115865684453	0.916793615374021
Merged-chr15-101284161-4	chr15	101284007	101284207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026566)	promoter-TSS (NM_026566)	-194.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	6.30279235245514	6.40568413455622	6.54706689133385	6.35614842013178	6.59933858897223	6.38191470067872	6.13070502653733	6.8236931422007	0.162587133370544	0.49784581365762	0.767249105147355
Merged-chr9-85413993-4	chr9	85413864	85414064	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86814.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	5.05811933195525	5.13836568964859	5.29668651145893	5.6132452211994	5.52511115445149	5.47139717147422	5.52078120427266	5.35351208021011	0.267212613103126	0.38243359817513	0.68450113368808
Merged-chr3-109027771-4	chr3	109027629	109027829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163567)	promoter-TSS (NM_001163567)	-122.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	7.52795289643015	7.53100284862937	7.7973221680907	7.69155860159556	7.74968958781737	7.67835226134248	7.81821864723036	7.67353055840944	0.116561941844554	0.493071893225339	0.764001251274968
Merged-chr16-23332926-4	chr16	23332818	23333018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 5 of 7)	intron (NM_001252505, intron 5 of 7)	42448.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	5.7746442111363	5.38854751776337	5.7279494735291	5.68957648128424	5.6401253992422	5.82740025176728	5.87851153090309	5.39264595470192	0.0715065070534526	0.796039265312148	0.921023514054185
Merged-chr4-141761785-4	chr4	141761690	141761890	+	963.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172338)	TTS (NM_172338)	15115.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	5.11716056770575	5.25867313434762	5.05678401025127	4.9590241868674	4.73214757633402	4.788863161149	4.71504836081927	4.46692832131621	-0.840488803239231	0.0124369406259089	0.0921174814580196
Merged-chr6-122571004-4	chr6	122570912	122571112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17203.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	7.57854836315728	7.45398023126571	7.78466151526803	7.4934083652529	7.25250566745168	7.40343384670049	7.0710922173302	7.36039785310651	-0.404485819421745	0.0307615464358119	0.17008808569287
Merged-chr16-30512154-4	chr16	30512057	30512257	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172614, exon 10 of 10)	3' UTR (NM_172614, exon 10 of 10)	38421.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	5.30569177281519	5.19727382636346	5.17988979547348	5.49285433479301	5.44442441510874	5.44971800018389	5.31002477042759	5.24115213305971	0.0903647672331799	0.756332836011423	0.904248123472918
Merged-chr14-9411971-4	chr14	9411877	9412077	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-472118.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	5.0448542741961	4.88255871986897	5.33399731739887	6.12963840097364	5.05200255135206	5.25839924020396	4.90970760938504	4.96849846120971	-0.751997104230602	0.0605617556228547	0.260052547978977
Merged-chr19-10100912-3	chr19	10100802	10101002	+	801.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019699, intron 1 of 11)	intron (NM_019699, intron 1 of 11)	601.0	NM_019699	56473.0	Mm.38901	NM_019699	ENSMUSG00000024665	Fads2	2900042M13Rik|Fadsd2	fatty acid desaturase 2	protein-coding	3.25033251596019	3.38426309674139	3.12326988165566	3.3212613053119	3.23932834637477	3.30001413806997	3.5559519282977	3.52147084780401	0.458470616976124	0.388439073673224	0.688981838974675
Merged-chr2-173218558-4	chr2	173218458	173218658	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139519, intron 1 of 3)	intron (NM_001139519, intron 1 of 3)	364.0	NM_021394	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	3.90877922004167	4.78368219586348	4.07192282185644	4.03123597914648	4.21545884772381	3.91245532675411	4.58407569497695	4.16766788123347	-0.015116661451445	0.975006207686685	0.991074142905113
Merged-chr5-32007018-4	chr5	32006917	32007117	+	872.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 9 of 11)	MIRb|SINE|MIR	-129455.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	3.88230432776852	3.95179206865858	4.07693975140666	4.1288622478507	3.94646660695828	3.83438835784493	3.91799149749502	4.20247654947901	-0.105818964367952	0.806343502747162	0.925408958667777
Merged-chr3-95053895-4	chr3	95053809	95054009	+	687.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-11295.0	NM_008951	19185.0	Mm.2261	NM_008951	ENSMUSG00000005625	Psmd4	Af1|Mcb1|angiocidin	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	protein-coding	3.782822252388	3.73322835599824	4.02396514641037	3.66844099456806	3.90638032255245	3.95601191635028	3.71477224105918	3.97688282006758	0.271227667231378	0.545710290726369	0.795980613958413
Merged-chr10-7040328-4	chr10	7040224	7040424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17139.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	6.52080977617885	6.25767114181793	7.20110367534139	7.21679458464398	5.98906367190872	6.19817361873787	6.84727359909838	6.27941074376039	-0.725755162126401	0.0202180182291754	0.128996516485362
Merged-chr5-88961537-3	chr5	88961458	88961658	+	828.283325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359211, intron 3 of 26)	intron (NM_001359211, intron 3 of 26)	-66408.0	NM_001359212	54403.0	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	3.63650541802937	3.77260084787765	4.42248792448314	4.33308126508581	3.37018906079146	3.43583354137088	3.50474668439853	3.24238019563251	-2.23616394135131	8.65580085294658e-05	0.00179991600616969
Merged-chr14-73227319-3	chr14	73227215	73227415	+	803.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	-10576.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	3.18658462061036	3.12687364370489	3.45086406316893	3.52104123500812	2.86833827610689	3.0378746133839	2.84874760421583	3.34985008952357	-1.18000807409058	0.0601488697333125	0.258894382218507
Merged-chr5-138731123-4	chr5	138731056	138731256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23925.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	5.88380893401779	6.80241927594722	6.53076489510797	6.02759304257889	6.25138819590902	6.59393786750025	6.16786357241912	5.80192531211635	-0.193898679240867	0.528269250328609	0.784934672970676
Merged-chr17-33955721-4	chr17	33955604	33955804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011296)	promoter-TSS (NM_011296)	-63.0	NM_011296	20084.0	Mm.298745	NM_011296	ENSMUSG00000008668	Rps18	H-2Ke3|H2-Ke3|Ke-3|ke3	ribosomal protein S18	protein-coding	7.31727304698551	7.83912825774467	6.98005711975041	7.13687817692672	7.67028677702347	7.65478251437814	7.36382111496333	7.58817897458794	0.286070770033059	0.216479864460244	0.523052975625069
Merged-chr17-36205834-7	chr17	36205847	36206047	+	912.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-15796.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	3.88284165301662	4.21320135933768	4.23716616085418	3.70024530460332	3.92584323473688	3.84083358839735	3.70667925768308	3.82922849405983	-0.523359645785288	0.266614915493258	0.578243793835723
Merged-chr5-18010488-4	chr5	18010350	18010550	+	967.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	47880.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	3.58390377131813	3.59412196469928	3.34479001043569	3.84987760912769	3.86206611407398	3.64347524060431	3.57062347259827	3.63596579380668	0.206274146711724	0.683961377583629	0.870489884572853
Merged-chr5-138161050-4	chr5	138160948	138161148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012002)	promoter-TSS (NM_012002)	-54.0	NM_012002	26893.0	Mm.3981	NM_012002	ENSMUSG00000019494	Cops6	Sgn3|VIP/MOV34	COP9 signalosome subunit 6	protein-coding	5.90522163146969	5.4550546444383	5.5965648525968	5.37475908136434	6.03518762917798	5.5705455739228	5.99582599865988	5.32350238416979	0.312418730670319	0.311523663798871	0.623598255825311
Merged-chr5-108246522-4	chr5	108246388	108246588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22409.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	6.490280925326	7.06332674560619	6.96109274021414	6.668642003929	6.35242392851946	6.57971431451019	6.50871229828641	6.3788122166522	-0.518424759714645	0.0240887283239616	0.144842452064248
Merged-chr9-95563424-4	chr9	95563330	95563530	+	860.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3613.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	3.81146769001139	3.97897038560695	4.78342294518456	4.6230166423138	4.21140233331102	3.99714690068857	4.21897077564544	4.32303243371007	-0.421563644584233	0.382185155130179	0.68428014481225
Merged-chr13-51908761-4	chr13	51908668	51908868	+	949.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62093.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	4.80053755088058	5.33998754228909	5.01632169835098	5.2023556244706	4.75363704663882	4.97680320295909	4.61422453051497	4.75860627136475	-0.671292970741325	0.0478322166447723	0.225622885921686
Merged-chr11-50369632-4	chr11	50369552	50369752	+	955.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8067.0	NM_021510	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	4.81232101377268	4.9750103363768	4.73736574672137	5.073882504425	4.5052179449512	4.87227771275619	4.79027364262258	4.73427553211688	-0.410017771177451	0.232148982130731	0.541762755236439
Merged-chr1-36022801-2	chr1	36022701	36022901	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-45599.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	3.64650645555559	3.50339052721769	3.47892599238678	2.91607875814969	3.60515424636445	3.76828945283755	3.91038761168708	3.74587364095204	1.12950879439069	0.0415482156680467	0.20644750038645
Merged-chr2-79713802-4	chr2	79713708	79713908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110980, intron 2 of 2)	intron (NR_110980, intron 2 of 2)	6028.0	NM_001290743	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	6.91607550695882	7.21280654293187	7.40790222299332	7.68794857424276	7.43001885661514	7.08133277573406	7.12200321298836	6.86983626110613	-0.270418318671384	0.255888991861539	0.567467793489678
Merged-chr6-37231333-4	chr6	37231229	37231429	+	972.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	68647.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	5.30147184964047	4.8582794221586	5.8988298075798	6.45217343066594	5.07296112083504	5.27190203865705	5.59355472034978	5.80906580099353	-0.488597919297903	0.430049393397505	0.720740306563559
Merged-chr3-100932384-4	chr3	100932267	100932467	+	900.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001165953, exon 7 of 7)	3' UTR (NM_001165953, exon 7 of 7)	9874.0	NM_001165953	229644.0	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	4.48467512390501	3.97396965922261	4.40620944456532	4.08090512837489	4.39808411343407	4.45029273037738	4.30225831655256	4.36188139422927	0.338689968947225	0.397537227471861	0.695931089908973
Merged-chr1-91055138-4	chr1	91055067	91055267	+	948.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	1723.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	4.36648181254489	4.63845099389962	4.41249109184292	4.63583623955021	4.47713322684472	4.62920849974549	4.55822260198675	4.53681188722203	0.0343703092393027	0.924098572942488	0.971902425063881
Merged-chr5-27791024-1	chr5	27790924	27791124	+	880.0	f0_balb.idr	intron (NM_018878, intron 1 of 20)	CpG	526.0	NM_018878	55982.0	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	4.60249529879695	4.40704466341024	4.56209204256795	4.52895342289707	4.63393319054599	4.81551224654767	4.76798178197562	4.82224135212308	0.498276982588164	0.144875837335692	0.424036712956412
Merged-chr15-67321626-2	chr15	67321520	67321720	+	605.0	f0_balb.idr|f0_c57.idr	intron (NR_045140, intron 5 of 8)	RLTR24B_MM|LTR|ERV1	94851.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	3.88743911853907	4.07700973862888	3.88801774980259	3.38953090028667	3.6923409013871	3.7331402764755	4.05351027432966	4.06976164057299	0.198484356333533	0.690893323064603	0.874212856957235
Merged-chr18-88735852-3	chr18	88735746	88735946	+	808.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	158361.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	3.47119403619994	3.4958031084689	3.21948582344923	3.87408968654725	3.69542038441219	3.46444208292338	3.45881941404045	3.77429383496127	0.171275481239772	0.754960485610745	0.903523774777845
Merged-chr2-115581658-4	chr2	115581550	115581750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145898)	promoter-TSS (NM_001145898)	-66.0	NM_207264	399568.0	Mm.134929	NM_207264	ENSMUSG00000040282	BC052040	-	cDNA sequence BC052040	protein-coding	6.46481149863075	6.00663279244694	5.93548768497746	6.5705125606117	6.50044237312605	6.44474203083739	6.8274753181662	6.41033778220544	0.39381651544034	0.131987164281102	0.404407457094184
Merged-chr2-171630363-2	chr2	171630247	171630447	+	749.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	332452.0	NR_040509	75655.0	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	2.84916113671526	2.98192531313645	3.16561461205473	3.13989260241273	2.41683147330154	2.4520355290759	2.50449998357133	2.43074810565957	-4.00414643822156	6.45463940980503e-05	0.0014024260639515
Merged-chr19-44394135-4	chr19	44394034	44394234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009127)	TTS (NM_009127)	13575.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	5.2819238070665	5.76971396640248	5.31490067241407	5.80491864609898	5.59274066269785	5.39383081282482	5.43692269985449	5.246336049883	-0.266547678198851	0.380016868775579	0.682492385198621
Merged-chr1-180829987-4	chr1	180829879	180830079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16374.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	7.37202628429022	7.28152154282198	7.07638799552201	7.34430077677267	7.32693978730173	7.22873774762565	7.39385592531403	7.10807509767585	-0.00909563770176066	0.961094039067387	0.98607960708679
Merged-chr12-59066868-4	chr12	59066767	59066967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008891)	promoter-TSS (NM_008891)	-52.0	NM_008891	18949.0	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	8.52650447077166	8.82405028434765	8.47814992856536	8.69093609988685	8.80922983385518	8.39127987095081	8.79334940534024	8.30473044947297	-0.0506379888045726	0.785417668917522	0.916479414030825
Merged-chr3-15284147-4	chr3	15284053	15284253	+	852.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48149.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	3.95105661657889	3.65450294055	4.51910696547621	4.17421563406224	3.82502741889301	3.96771992160106	3.93508735634162	4.1387436435768	-0.380867793558736	0.423651891895993	0.715559726953275
Merged-chr6-29248053-3	chr6	29247967	29248167	+	944.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-24421.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	3.81085524376604	3.8343493341465	4.0017975503564	3.73011519229937	3.43860405541879	3.70694834760329	3.79548107116104	4.16431833111507	-0.13013076310964	0.790898828174209	0.918913335791783
Merged-chr1-95644278-4	chr1	95644183	95644383	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 3 of 3)	MIR3|SINE|MIR	23311.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	5.16160645847587	5.42467958766699	4.7514741434391	5.14301424574144	4.68326409836591	4.84652305715271	4.72930559019489	4.57622013331282	-0.876826970094692	0.0113135927395762	0.0861272960011009
Merged-chr6-136858444-1	chr6	136858344	136858544	+	580.5	f0_balb.idr	promoter-TSS (NM_026639)	promoter-TSS (NM_026639)	-844.0	NM_026639	109978.0	Mm.31840	NM_026639	ENSMUSG00000030217	Art4	4432404K01Rik|ARTC4|DO|DOK1	ADP-ribosyltransferase 4	protein-coding	2.70234261193544	2.33721275074429	2.42300774799205	2.44332414283113	2.07713174159134	2.08140050568705	2.06196854004591	2.29027132905599	-2.55080545230638	0.00561457901048249	0.0517601501602297
Merged-chr2-3419133-4	chr2	3419025	3419225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355210)	promoter-TSS (NM_001355210)	4.0	NM_001355207	104362.0	Mm.2688	NM_008579	ENSMUSG00000026650	Meig1	MLZ-278|Meg1	meiosis expressed gene 1	protein-coding	8.4305642671548	8.34210568915741	7.96619781992362	8.11258138325563	8.19661131158747	8.51124774196365	8.27818115165168	8.12341023203273	0.0758512970344989	0.676224405405836	0.867073370665477
Merged-chr4-155667193-3	chr4	155667098	155667298	+	796.916687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145124, intron 1 of 18)	intron (NM_145124, intron 1 of 18)	2056.0	NM_001256108	76580.0	Mm.235738	NM_145124	ENSMUSG00000029060	Mib2	2210008I11Rik|Zzank1|skd	mindbomb E3 ubiquitin protein ligase 2	protein-coding	3.27374254577873	3.16736133407275	2.98136346815036	3.06865530285821	3.76253433619048	3.89052573319685	3.74918992210139	3.80920321560421	2.30946157680989	9.09430688543439e-06	0.000253157477433842
Merged-chr10-8769499-4	chr10	8769401	8769601	+	838.895874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	116569.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.68660861474734	4.44608399621629	4.58096324804979	4.5898247111931	4.20330341849534	4.21592431420279	4.27212384780335	4.24088606983663	-0.822269341644712	0.0288208447572924	0.163110352944209
Merged-chr11-54437478-4	chr11	54437389	54437589	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173753)	promoter-TSS (NM_173753)	-690.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	5.25355019020467	5.44601268338401	5.08897852738259	5.47184622822397	5.38710034346352	5.19389632959398	4.99251881888224	5.42433576037159	-0.127877083637589	0.676149292472179	0.867068661286877
Merged-chr11-54691411-4	chr11	54691323	54691523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175258, exon 26 of 28)	exon (NM_175258, exon 26 of 28)	95277.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	7.62197738809837	7.45164089050482	7.6887503794873	7.53630762314005	7.42084120097702	7.62912430068961	7.38611197269703	7.49424074425848	-0.121402415234386	0.486720150108541	0.760359360985358
Merged-chr12-104752133-4	chr12	104752037	104752237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148948)	promoter-TSS (NM_148948)	-185.0	NM_148948	192119.0	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	7.46603072962841	7.48994686215051	7.41976926283319	7.34497322611166	7.55466441018996	7.50649489351438	7.38298955977475	7.07144269132228	-0.0408062917990095	0.829824906072763	0.934651068478086
Merged-chr15-84260484-2	chr15	84260384	84260584	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	28441.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	3.29466489381642	3.35802935188294	3.29511464601642	3.02441995200103	2.99312467393602	3.22613511495861	3.43861700729342	3.29329568931346	0.00694910158921966	0.990203474969803	0.996137278565127
Merged-chr13-52658646-3	chr13	52658554	52658754	+	753.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61772.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	3.95507936011737	4.31813103464042	3.84813117716745	3.70853991679683	3.88432706154381	4.59306082567831	4.12848107161675	3.78889822892115	0.411048916243909	0.400058821320101	0.698016583884129
Merged-chr17-7884975-4	chr17	7884875	7885075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41025.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	5.92651332591646	6.21582894854812	6.12083786225684	6.29237292684784	5.8892141629674	5.95771090142006	5.80163492807991	6.13619591760904	-0.328000825881408	0.181003434647292	0.477419531414794
Merged-chr8-46778311-4	chr8	46778237	46778437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	38592.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	7.56767073691255	7.82729758286162	7.53246180167708	7.55319434714406	7.66981174653506	7.71888925390001	7.65154960653673	7.74760243595527	0.0937638180840908	0.584498079687778	0.817672388791422
Merged-chr18-67774835-4	chr18	67774717	67774917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039088)	promoter-TSS (NM_001039088)	-59.0	NM_001360934	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	7.90988728437793	7.56426886783193	7.67668985133031	7.97469947562878	8.03292046039179	8.01527921565005	7.96884145117094	7.92004765780019	0.241430622445821	0.16996881424183	0.462912195481891
Merged-chr3-79172599-4	chr3	79172513	79172713	+	960.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26738.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	4.32633834279554	4.71988239502654	4.57201979971721	4.39134179928925	4.46248390331808	4.50042712365745	4.11628247361776	4.02243623601095	-0.494045019900532	0.225410583373664	0.533784680083638
Merged-chr3-135825608-4	chr3	135825513	135825713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135150)	promoter-TSS (NM_001135150)	-44.0	NM_001135149	67547.0	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	5.55500859622523	5.40934987965541	5.58112964839796	5.4887986020775	5.06194842227284	5.16934692903921	5.50238242834545	5.33059218317311	-0.424566515130412	0.142009494319568	0.419334764888857
Merged-chr2-143093859-4	chr2	143093757	143093957	+	990.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15464.0	NM_020595	57329.0	Mm.157751	NM_020595	ENSMUSG00000027416	Otor	CDRAP|Fdp|MIA|MIAL	otoraplin	protein-coding	5.82150957487767	5.2529844293678	5.59008451123095	6.09075834843531	5.08795280974628	5.03750071354854	5.53599654043758	5.2688534824093	-0.860378171316012	0.00925101037553328	0.0746404066560965
Merged-chr5-139382137-3	chr5	139382056	139382256	+	953.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	1517.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	3.88599441622122	4.31783671755249	4.89275034764693	4.62225839620864	3.56240418153225	3.75484712973301	4.03421867988203	4.36896397849894	-1.29206305820527	0.0135618317253302	0.0978133902749588
Merged-chr6-72375355-2	chr6	72375233	72375433	+	840.0	f0_balb.idr|f0_c57.idr	intron (NM_016872, intron 1 of 2)	MIR|SINE|MIR	5135.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	4.49732549128777	4.0559223479582	3.84183718183269	4.14344745649195	4.15151268710124	3.96331753523546	4.03512749838089	4.09755199695786	-0.224163547792621	0.606234990589984	0.829351704182035
Merged-chr13-23425663-4	chr13	23425557	23425757	+	896.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Tyr-TAC|tRNA|tRNA	-1791.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	4.02126012717931	4.04493258204657	3.71840866484684	4.09688101017268	3.87105006338684	3.94753170871654	3.86313018003524	3.71646816505274	-0.380285876333031	0.393613915545534	0.692736744501423
Merged-chr12-54874963-3	chr12	54874863	54875063	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12086.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	3.56542217217929	3.373329112315	3.56598157661665	4.04868153431818	2.86737990632585	2.90848086216669	2.87288210308653	3.35300278231967	-2.65872690023116	0.000147559229868481	0.00281207989901167
Merged-chr4-59199552-4	chr4	59199466	59199666	+	809.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011673, intron 1 of 8)	intron (NM_011673, intron 1 of 8)	10016.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	4.14687442590455	4.35386080978461	4.14747951146196	4.10281828443387	4.36348557280283	4.32044288577093	4.49779425147953	4.04575088945147	0.326416981469031	0.412851970748301	0.707849944017664
Merged-chr9-7763952-4	chr9	7763826	7764026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133739)	promoter-TSS (NM_133739)	-151.0	NM_133739	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	8.92621977040819	9.33654080019049	9.42635233844868	9.26041083155373	9.29581324969138	9.28585301912849	9.46872396709604	9.11239830908203	0.0560376240730029	0.737391405460413	0.896392006995728
Merged-chr7-46607904-4	chr7	46607805	46608005	+	979.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013789, intron 8 of 10)	intron (NM_013789, intron 8 of 10)	31902.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	5.53931686189774	5.62430165613549	5.48611517413923	6.01766267886705	5.27673433804776	4.90450562073501	5.40235170904263	5.48225741964566	-0.724823428627731	0.0205168806154102	0.130233888644012
Merged-chr2-167257354-4	chr2	167257260	167257460	+	832.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-16823.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	3.62516402021879	3.64368819385959	3.73745836470593	3.37110928005314	4.18218205652163	4.0117318329766	3.87198341168818	3.78777442577481	1.16053691597676	0.0124947331916174	0.0924013105294689
Merged-chr5-31288387-3	chr5	31288304	31288504	+	766.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026298, intron 1 of 47)	intron (NM_026298, intron 1 of 47)	2710.0	NM_026298	67661.0	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	3.26748957259956	3.37051624756228	3.21163280356419	3.58693508345688	3.1806653585738	2.99310361492802	2.95022271336407	3.08966289924991	-1.23714988446407	0.0367286666151462	0.190824497007298
Merged-chr7-63897029-4	chr7	63896938	63897138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	CpG	-19819.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	7.63078776894561	7.47526323022842	7.22490248231432	7.5457985946507	7.58821764714255	7.73064540033322	7.89380407285285	7.68480517554473	0.321696989856482	0.0788853348732199	0.303956003407184
Merged-chr4-15266147-3	chr4	15266048	15266248	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181401, exon 1 of 3)	exon (NM_181401, exon 1 of 3)	328.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	6.40114215468499	6.06586311545035	6.2780332039474	6.33824084001598	6.27805481328572	6.20895411765149	6.55643254604737	5.95743282104255	-0.0125523508757386	0.958940456703491	0.985325253500605
Merged-chr13-100492587-4	chr13	100492479	100492679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153794)	promoter-TSS (NR_153794)	30.0	NM_001360706	23894.0	Mm.272533	NM_022011	ENSMUSG00000021639	Gtf2h2	44kDa|BTF2 p44|BTF2-p44|Btf2p44|p44	general transcription factor II H, polypeptide 2	protein-coding	5.01399220724352	5.03470319803774	5.13995347975442	4.79659098362305	4.88356163513311	4.81305472668234	4.88862676367917	4.87272768079647	-0.242539578947864	0.453714119131081	0.737638651163466
Merged-chr6-30300576-4	chr6	30300499	30300699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009459, intron 1 of 6)	intron (NM_009459, intron 1 of 6)	3940.0	NM_009459	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	5.54489389612558	5.3822739425385	5.76378630948837	5.68239994827808	5.37157432880099	5.0049407167187	5.54388176982232	5.54195124566195	-0.37846617513727	0.199161264775552	0.500957653030569
Merged-chr18-4369318-4	chr18	4369230	4369430	+	798.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040328)	TTS (NR_040328)	-6262.0	NM_001361008	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	3.88441577997826	3.77674797531904	3.83551468283931	3.82183177008389	4.04113510617517	3.60695510703007	3.91563944620956	3.8826920595523	0.147643800920627	0.742114656837059	0.898417179766546
Merged-chr8-115570511-4	chr8	115570422	115570622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136372.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.44243289203445	5.97391235116791	5.94699255870755	5.69469493475253	5.87590742636737	6.01250174855552	5.64053737531104	5.04711083404191	-0.138585538464867	0.667972304453316	0.862818268009847
Merged-chr11-23257461-4	chr11	23257366	23257566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035226, intron 2 of 25)	intron (NM_001035226, intron 2 of 25)	1425.0	NM_134014	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	6.93507558344699	6.91940146678658	7.20493102210446	7.29479873461652	6.78932357608577	6.46725154791471	7.07078648844131	6.94433467490654	-0.372833418639489	0.094549073102	0.336411320886142
Merged-chr2-78915105-4	chr2	78915020	78915220	+	766.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356395, intron 4 of 5)	intron (NM_001356395, intron 4 of 5)	45442.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	4.03455393498689	4.16839519365736	3.83372919122432	3.90649315524462	3.89830819049672	4.00782205967219	4.01774874126273	4.12258248435237	0.0574737498814013	0.892675107597735	0.959843522216671
Merged-chr8-77452101-4	chr8	77452016	77452216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	(A)n|Simple_repeat|Simple_repeat	-64940.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	7.65771486351409	7.75742693176922	7.37251631218923	7.16715887408661	7.75115230760625	7.77702719452718	7.44487049141475	7.63714793402886	0.210224453815472	0.308145040229596	0.62050061724857
Merged-chr1-93101149-2	chr1	93101049	93101249	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294149, intron 1 of 47)	intron (NM_001294149, intron 1 of 47)	725.0	NM_001294149	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	2.92240561106399	3.02255302799858	3.04022194184745	2.67968216909284	3.02728835317266	2.90072714111197	2.71660553834212	2.98124945788006	-0.00554362431720532	0.992971526649978	0.997455796658417
Merged-chr9-116084207-4	chr9	116084109	116084309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	91154.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	6.88682070787733	6.8337584557043	6.54497597523643	6.92739410577183	6.92798772872198	6.67024346837738	6.75865661061648	6.78834248130586	-0.0273187731265834	0.895205085352568	0.960764192429517
Merged-chr6-137757819-4	chr6	137757723	137757923	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172733, intron 1 of 8)	MTC|LTR|ERVL-MaLR	3246.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	5.09952292537979	5.10922690990763	5.54441439680491	5.74206758443069	5.18177974729721	5.3452599375816	5.41304153756222	5.02420408477395	-0.314437985419253	0.339545509439036	0.648774648981312
Merged-chr9-96503498-3	chr9	96503398	96503598	+	711.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24823.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	3.22777065236381	3.1830899902943	3.16287094428169	3.60517551139322	3.30772201906252	3.34037836619603	3.64158751606924	3.6558044264999	0.576334068497995	0.311737339270791	0.623665218229603
Merged-chr15-31332800-3	chr15	31332681	31332881	+	977.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	MTEa-int|LTR|ERVL-MaLR	34978.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	3.43792918949227	3.66907861131664	3.60080824019195	3.89020949894799	3.25481744696083	3.49309200052193	3.30653094079447	3.43658762081156	-1.02619902559854	0.0506999811373132	0.233471822305287
Merged-chr2-79255958-4	chr2	79255829	79256029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010576, intron 1 of 27)	intron (NM_010576, intron 1 of 27)	503.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	5.20498430271789	5.11212205268448	5.73419539187348	5.72122339697021	5.06742675416933	5.50496010404234	5.11351604386716	5.06410624643251	-0.521529486649504	0.115863274585505	0.376594000717918
Merged-chr9-15015828-4	chr9	15015781	15015981	+	778.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019482, intron 2 of 4)	intron (NM_019482, intron 2 of 4)	29597.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	2.69763522559652	2.97498436418581	2.77129913503398	2.864847000021	3.07244559319722	3.08011272193657	3.01910441093568	3.29300595454476	1.18599819405424	0.0492925954067893	0.229734419370164
Merged-chr11-110130950-1	chr11	110130850	110131050	+	744.0	f1_c57bl6.idr	intron (NM_147220, intron 23 of 38)	intron (NM_147220, intron 23 of 38)	-35013.0	NM_153145	217258.0	Mm.344148	NM_153145	ENSMUSG00000041828	Abca8a	-	ATP-binding cassette, sub-family A (ABC1), member 8a	protein-coding	3.00478053761097	2.78961950406064	3.19878023570462	2.96988342567476	3.19935057815393	3.68312851257163	3.2999741142807	3.36576141185945	1.50778968290883	0.00949359984699242	0.0760239877060134
Merged-chr8-83166093-4	chr8	83165978	83166178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027758, exon 1 of 18)	exon (NM_027758, exon 1 of 18)	726.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	5.70024883429971	6.01463341921057	5.90217379446973	6.03830304339484	5.93148951883025	6.12296455313706	5.91751896007817	6.18716039905499	0.168476283145032	0.495936954899221	0.766025331518119
Merged-chr3-146812566-2	chr3	146812468	146812668	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_011100, intron 1 of 9)	CpG	378.0	NM_011100	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	5.46436134124376	5.52586389493784	5.57771430519448	5.74681624422016	5.49263814570791	5.66989138033994	5.87691360796072	5.54663673494417	0.0884842461253716	0.74646223994674	0.90014206765363
Merged-chr10-54075813-4	chr10	54075694	54075894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038016)	promoter-TSS (NR_038016)	2.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	7.90633705057367	7.80330827495526	7.71637912154455	8.0612265754575	7.7875588282322	7.64842926097004	8.15311040454453	7.6256418854875	-0.0804633426403332	0.678523502032742	0.868112820688421
Merged-chr2-118762636-4	chr2	118762482	118762682	+	908.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001982)	promoter-TSS (NM_001001982)	79.0	NM_001001982	214239.0	Mm.379342	NM_001001982	ENSMUSG00000045838	A430105I19Rik	Ccdc9b|Gm353	RIKEN cDNA A430105I19 gene	protein-coding	4.07318592558388	3.7741847580377	4.02231127927294	4.37715797937448	4.59322954078854	4.09249251831744	4.40403596197579	4.34302528722336	0.679489647891524	0.125955677338577	0.394223114732801
Merged-chr6-126939607-4	chr6	126939514	126939714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138594)	promoter-TSS (NM_138594)	-27.0	NM_009013	19362.0	Mm.204634	NM_009013	ENSMUSG00000030346	Rad51ap1	2510006L10Rik|RAB22	RAD51 associated protein 1	protein-coding	7.8168611347328	7.84096964366374	8.02436486100353	7.82544939442087	7.88038956220635	7.96423491600985	8.11015185420709	7.96546400533678	0.134537651729444	0.409632118457344	0.705214871926678
Merged-chr12-100740447-4	chr12	100740350	100740550	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15330.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	5.34844161546916	5.10283298001969	5.59161648078498	5.87742769252991	5.32176728250162	5.19168909201614	4.94930206572419	5.4589776530382	-0.50131231601496	0.133154914458931	0.406407686474519
Merged-chr15-101256243-4	chr15	101256136	101256336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10610.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	5.8211052579191	5.45908593337753	5.82213266605422	5.42799382295397	5.55216350017317	5.69336538911565	5.62457584734219	5.92597869111388	0.120976741956949	0.665488355398157	0.861482624541591
Merged-chr6-145142572-4	chr6	145142460	145142660	+	750.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008511, intron 3 of 18)	intron (NM_008511, intron 3 of 18)	-2915.0	NM_001361633	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	3.725719968187	3.28912784194755	3.57075960794853	3.77756315775397	3.80659736436788	3.50808189625229	3.80326589031181	3.45390818387474	0.145218573585697	0.77866607757156	0.913781420202775
Merged-chr12-71836150-4	chr12	71836059	71836259	+	922.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026102, intron 1 of 25)	intron (NM_026102, intron 1 of 25)	5091.0	NM_172464	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	3.90064966386968	4.29871149724747	3.78707814703314	4.45168632702948	4.08530432085655	3.90797839603801	4.44533954134485	3.95253606208074	-0.0933945855885221	0.844653464711207	0.941125889580383
Merged-chr3-79252992-1	chr3	79252892	79253092	+	864.3333130000001	f0_balb.idr	intron (NR_045502, intron 2 of 2)	intron (NR_045502, intron 2 of 2)	40073.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	4.36796566079046	4.22681004326819	4.27898760566652	4.29755700501782	4.62424728015738	4.35862316075452	4.43196570250181	4.48940028853587	0.45527086849094	0.217794496185647	0.524722259815806
Merged-chr11-89003391-4	chr11	89003283	89003483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	3980.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	5.37827904151099	5.21539209403599	5.60580106184571	5.43107622764852	5.58647310352361	5.42802305970297	5.74586397424626	6.0534899980307	0.525828299881372	0.0696060184647748	0.282260931330834
Merged-chr8-34817870-3	chr8	34817783	34817983	+	789.166687	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_176933, intron 3 of 3)	intron (NM_176933, intron 3 of 3)	10273.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	3.75630093882639	3.56937759363848	3.53708093809965	3.802186092011	3.94701405873556	3.65279067162754	3.88276408952386	3.70322490251593	0.379685638341485	0.419169815442165	0.712265470490053
Merged-chr2-13561403-4	chr2	13561295	13561495	+	988.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12916.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	5.00893281709964	4.93868835631964	4.22874967904619	4.45446238203997	4.9719380248251	4.94650989494353	4.71337935579837	4.65398162617669	0.292698552752781	0.452129708143613	0.736542568598338
Merged-chr8-94214507-4	chr8	94214423	94214623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357266)	promoter-TSS (NM_001357266)	-41.0	NM_001357266	71805.0	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	7.15971100217927	7.24268490568282	7.23966198268118	7.16373433996349	7.39288456439865	7.4487321388943	7.26699265385077	7.23460529059315	0.189377554779827	0.285982401168705	0.59757930169056
Merged-chr12-85421007-4	chr12	85420923	85421123	+	860.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46306.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	4.64694967830649	4.53103251567659	4.29976043695137	4.19580781247205	4.28998008367167	4.28356659105271	4.44682910488974	4.05401306443207	-0.34686847007815	0.391608723383737	0.691333332627163
Merged-chr18-46741682-7	chr18	46741612	46741812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303015)	promoter-TSS (NM_001303015)	-133.0	NM_026217	67526.0	Mm.9852	NM_026217	ENSMUSG00000032905	Atg12	4931423H11Rik|A330058M13Rik|Apg12l|Atg12l	autophagy related 12	protein-coding	6.49897360181062	6.73059425099036	6.84539868517448	6.40180457035349	6.2875044433569	7.22567304187899	6.51735839784936	6.71654905583882	0.145581090054494	0.587007750005582	0.819013564908904
Merged-chr6-37213093-4	chr6	37212985	37213185	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	86891.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	5.6670099976376	5.08283959721014	5.59083692398498	6.20015923308289	5.62075000379561	5.13810298143289	5.48092508090933	5.87037871671577	-0.2618361344456	0.464553295284475	0.745478379589089
Merged-chr13-51101601-4	chr13	51101492	51101692	+	967.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029463)	promoter-TSS (NR_029463)	45.0	NM_001283029	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	4.55349544088841	4.89960238879247	4.80445349347078	4.81933631307494	5.33394037872741	5.050984648586	4.70432078025023	4.76282931206962	0.441929946692419	0.212741088533222	0.517670706102327
Merged-chr15-96476575-4	chr15	96476479	96476679	+	906.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15736.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	4.6356277828258	4.6032579620922	4.37663473292042	4.5238302448362	4.64705428034567	4.6875571859584	4.69010343392706	4.88133489427918	0.407524171942365	0.238642295961662	0.548972916561797
Merged-chr1-87649046-5	chr1	87648999	87649199	+	875.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	28787.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	4.10954921955611	4.243853193073	4.65455889381595	4.46984793844656	4.3590957157474	4.47618673753069	4.32826665475523	4.15880823618056	-0.129840782059993	0.744854807555842	0.899357438330432
Merged-chr1-58029741-2	chr1	58029641	58029841	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009676)	promoter-TSS (NM_009676)	-228.0	NM_009676	11761.0	Mm.26787	NM_009676	ENSMUSG00000063558	Aox1	AI196512|AI255253|Ao|Aox-1|Aox-2|Aox2|Moro|Ro	aldehyde oxidase 1	protein-coding	2.99031306920095	2.9452629463748	2.99067825483481	3.3795726361006	2.74713067126632	2.96981406061016	3.09456993358255	2.86188340481399	-0.764775849613023	0.228602164566619	0.53744877323504
Merged-chr5-24393585-4	chr5	24393488	24393688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029020)	promoter-TSS (NM_029020)	-568.0	NM_029020	74610.0	Mm.283914	NM_029020	ENSMUSG00000028973	Abcb8	4833412N02Rik|AA409895	ATP-binding cassette, sub-family B (MDR/TAP), member 8	protein-coding	5.77768498971035	6.16298214872135	5.61505389500538	5.91140252829434	6.0110028364787	6.09921259389248	6.15860037031629	6.0495352030683	0.295175081255919	0.241600588177667	0.552100865114873
Merged-chr9-57517295-4	chr9	57517193	57517393	+	853.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3939.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	3.66290620953874	3.9054703437563	3.54812345615857	3.56878819412942	4.08275314482465	3.66487674350264	3.64916420281278	3.91099001836595	0.509716599165204	0.287232135143463	0.598979176834825
Merged-chr13-63278348-3	chr13	63278275	63278475	+	769.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	18772.0	NR_045794	100504114.0	Mm.437070	NR_045794	ENSMUSG00000097242	Gm16907	-	predicted gene, 16907	ncRNA	2.95713064884238	3.26231015162955	3.01750948969243	2.90218492363784	2.75345120453724	2.79153360787422	2.88493989011398	3.07313099106225	-0.703020188802165	0.260515335256873	0.572324359311071
Merged-chr4-55824207-4	chr4	55824110	55824310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-291735.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	6.49677320063249	6.33724828321909	6.54622082003203	6.7711464585579	6.17955030511545	6.08163248079989	6.68837036652512	6.42588566593203	-0.286672309667568	0.245967073682534	0.557185390346692
Merged-chr3-84348283-4	chr3	84348168	84348368	+	919.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31653.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	4.31935922588142	4.28182295896551	4.13933578066194	4.44791178322408	3.94926796409637	3.93286249853885	4.30037167542332	4.51170994690103	-0.289392399067938	0.497407383921581	0.767076255939255
Merged-chr13-76410833-1	chr13	76410733	76410933	+	717.5	f0_balb.idr	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	25872.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	2.96881862883403	2.75339730129319	3.02252253652354	3.16033472392091	2.32694113372381	2.46031863584192	2.72145404024113	2.59198576347796	-2.61211930257556	0.00149450415903196	0.018613702805903
Merged-chr13-73488890-4	chr13	73488798	73488998	+	966.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145376, exon 3 of 14)	exon (NM_145376, exon 3 of 14)	21515.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	4.19797350306135	4.57932848208136	4.68748575942005	4.79098153152049	4.43984141360549	4.48070599228494	4.62806168821817	4.88837520932917	0.0476474444863838	0.90216642552045	0.963687586843739
Merged-chr15-74673511-4	chr15	74673417	74673617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276684)	promoter-TSS (NM_001276684)	-947.0	NM_018790	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	5.89486378228736	5.37631497105401	5.7391390781376	5.650838492228	5.45941726779556	5.56090488881169	5.63676447529153	5.75867567255224	-0.11698200641873	0.671738962476444	0.864905117611895
Merged-chr4-133905367-4	chr4	133905269	133905469	+	753.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-17572.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	3.8225079305606	3.97040661337225	3.71324573646766	4.00692914166574	3.75803933674079	3.77298643945566	4.00037399598258	4.18426027481076	0.122438891074312	0.787707914566684	0.917681714279383
Merged-chr19-47937665-4	chr19	47937538	47937738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163267)	promoter-TSS (NM_001163267)	-74.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	5.30368857072973	5.46533977137415	4.69455418033544	5.29432882602505	5.78320930970003	5.21360479820903	5.33721134813101	5.49757556444346	0.459774193982517	0.169509446596004	0.462161476887795
Merged-chr18-44392873-3	chr18	44392778	44392978	+	742.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027490, intron 1 of 10)	intron (NM_027490, intron 1 of 10)	12378.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	2.66028105830743	2.51178490194237	2.71827799711743	2.79551205612472	2.15298091908915	2.34910614559996	2.52821846369933	2.39925447620706	-1.95258243698367	0.0170485241757456	0.11484023077875
Merged-chr12-100084454-4	chr12	100084365	100084565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27866.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	7.40990954754253	7.08898256498852	7.97013382725553	7.76935593797359	7.52106943001408	7.46222737174516	8.08268625576205	7.19862426834268	0.00578108851949382	0.982394016784892	0.993718392413265
Merged-chr16-38701532-1	chr16	38701432	38701632	+	560.0	f0_c57.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	11503.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	3.23759058065802	3.88010397985512	3.42142386409094	2.835672254604	3.60415998679104	3.53921586961943	3.462940188891	3.30025386001839	0.2503634335232	0.687299864561006	0.872193208407699
Merged-chr6-54963074-1	chr6	54962974	54963174	+	622.0	f0_c57.idr	intron (NM_172729, intron 1 of 11)	ORR1A4|LTR|ERVL-MaLR	8587.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	3.12156254537814	3.23333460610751	3.24770255819232	2.66775236397987	3.41978101837577	3.4798271491419	3.50182576300322	3.36063956150225	1.3537988587596	0.0240824011266933	0.144834333498572
Merged-chr6-5323540-3	chr6	5323456	5323656	+	872.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	-25183.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	3.39781401698499	3.22191136840138	3.60576746571876	3.0988114426644	4.50066704151551	4.50919786028496	4.4877285609267	4.04215291151253	3.20320034079774	4.64278573809827e-11	3.75106522193072e-09
Merged-chr3-133335313-4	chr3	133335210	133335410	+	981.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293641, intron 5 of 11)	intron (NM_001293641, intron 5 of 11)	25200.0	NM_001293641	74776.0	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	4.48550639192328	4.84662847588208	5.29491301463167	5.15353047314863	5.10099650151222	5.14785150498957	5.21010627603344	5.70148247435487	0.59998802117154	0.100638935239072	0.34827746273108
Merged-chr17-48275095-4	chr17	48274973	48275173	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172623, exon 6 of 6)	3' UTR (NM_172623, exon 6 of 6)	10778.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	5.50276074593217	5.59719357312083	4.92763042211046	4.73914035700689	5.96374338629851	5.87866472935195	5.55465378763361	5.38556394351405	0.842066839509609	0.0160953914964374	0.110106090468517
Merged-chr3-136331318-4	chr3	136331217	136331417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5251.0	NM_001033350	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	7.40023192030005	7.58172791868449	7.77517306471721	7.75470809785005	7.61467811054378	7.48449792893572	7.56062296913714	7.33412997740296	-0.179202667419875	0.330644812114629	0.641981554220558
Merged-chr11-5520910-4	chr11	5520826	5521026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001271730, exon 1 of 6)	5' UTR (NM_001271730, exon 1 of 6)	285.0	NM_001271730	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	7.74796924775997	7.67281499605729	7.51635201009434	7.46680175641212	7.82183025144509	7.83688129069338	7.85241346983102	7.74400211110786	0.282766134775809	0.0944597621578859	0.336228004732518
Merged-chr9-78039238-4	chr9	78039148	78039348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12710.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	6.24176628430364	6.35781499986285	5.90814730715005	5.95580471985594	6.38672674134963	5.90684497502352	5.94748393767768	6.20113649216302	0.0209972623877152	0.935978688566513	0.97677008152607
Merged-chr9-40325174-4	chr9	40325064	40325264	+	953.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	-3841.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	5.11428120753348	4.8219847955937	4.78758208924595	5.06842493153068	5.1675793162006	4.88262215062576	5.08998405608116	5.563953771124	0.453277452985834	0.175181797882602	0.469895860959054
Merged-chr15-10470666-4	chr15	10470550	10470750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030046)	promoter-TSS (NM_030046)	-134.0	NM_030046	78244.0	Mm.297862	NM_030046	ENSMUSG00000044224	Dnajc21	4930461P20Rik|9930116P15Rik	DnaJ heat shock protein family (Hsp40) member C21	protein-coding	7.09481430532296	6.97152133736075	7.13055750567001	6.86504863849668	7.11121798854226	6.8314848663872	7.28321543482997	7.00667427517413	0.086318334107921	0.66820368503761	0.862850737330936
Merged-chr5-99247702-8	chr5	99247566	99247766	+	977.7589109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	5261.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.73869855230093	4.63759395700133	4.98660664017353	4.98821574221101	5.06576570293209	4.51417096498397	4.86305049320913	4.73637348887461	-0.0620397078354849	0.861274275923128	0.947574515069552
Merged-chr7-80064463-4	chr7	80064359	80064559	+	972.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045695, intron 2 of 2)	intron (NR_045695, intron 2 of 2)	10798.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	5.1978097370764	5.3246287226008	5.25473156365533	5.03271111299749	4.7416075663166	4.75688932279688	4.77061518943923	4.82838969614027	-0.851923078767389	0.00808144195044768	0.0677058564725654
Merged-chr1-136683370-4	chr1	136683288	136683488	+	969.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045324)	promoter-TSS (NR_045324)	-8.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	4.68184058430985	4.73701766168694	4.60162974905403	4.49587206414655	4.5887433256011	4.96653936634316	4.84140027175076	4.79196854789504	0.365297252632297	0.288769233248109	0.600757153602827
Merged-chr8-90938622-4	chr8	90938520	90938720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 3 of 39)	intron (NM_177224, intron 3 of 39)	6371.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	6.29149212665447	6.66256586414543	6.76973411805161	6.79843839588582	6.02488897135764	5.77031654973261	5.96815348854197	6.128711006602	-1.00985475773313	3.13560677427492e-05	0.000754524051166694
Merged-chr3-27217230-4	chr3	27217157	27217357	+	939.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	34253.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	4.35049549615938	4.09722977815246	3.65990381747889	4.12017871020231	4.1720697030654	3.89346701907984	3.76168080874597	3.88104229616555	-0.371439829500932	0.431562108602607	0.721710551668303
Merged-chr1-131094079-4	chr1	131093969	131094169	+	945.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	3774.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	4.66796904544738	4.35209579649893	4.58488998748904	4.5594135038879	5.02649602805757	4.92123808950854	4.86785995390065	5.10649601854494	0.912527842342994	0.00618886685361723	0.0555087391347808
Merged-chr7-83857345-4	chr7	83857251	83857451	+	931.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26990.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	4.90063880743166	4.76858630871679	4.72453177419147	5.19826366832459	4.5496884154499	4.50885150739819	4.54220763738569	4.55993660586346	-0.830302690807094	0.0203434216433431	0.129461279316184
Merged-chr6-50037700-2	chr6	50037600	50037800	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72541.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	2.97568359315528	2.64835358407052	2.65577511243946	2.66023877304773	2.80621548441496	2.90182857335488	2.84674278657339	3.13395627963643	0.857329194431098	0.173784346645368	0.467932514086273
Merged-chr10-14117181-4	chr10	14117085	14117285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 4 of 12)	intron (NM_001358783, intron 4 of 12)	150806.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	6.07443122701001	6.38388002604176	6.54518612237138	6.33639721730209	6.14319669814695	5.98853225545645	6.16877547612596	6.43043329734221	-0.231755263012677	0.334195097090761	0.644805241742718
Merged-chr1-36277457-4	chr1	36277361	36277561	+	956.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4036.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	4.83427389957343	4.95307653661077	3.97430163213592	4.74978947048224	4.90047939612179	4.93566854018242	4.58402425658684	4.83180837625248	0.285956643642625	0.490704684263873	0.762400819008103
Merged-chr16-30059493-4	chr16	30059403	30059603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5854.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	6.23509887550511	6.26235171343586	6.31512001950699	6.72634360541084	6.52467171475599	6.60108884009883	6.67227544711116	6.47187413113768	0.210889906074561	0.371864208482842	0.67586554900289
Merged-chr11-8566665-4	chr11	8566579	8566779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	97856.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	8.26112111648529	8.53312099998701	8.13222802226054	8.21424658811364	8.04950607888349	8.07741678276768	8.09984675780554	7.8168928342402	-0.355496982415867	0.0400741477931905	0.201956794517949
Merged-chr15-81511845-3	chr15	81511694	81511894	+	975.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45478.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	3.38350988018878	3.27409927106214	3.3222600671512	3.80045273260672	3.5674041601699	3.55723413154398	3.48568742421884	3.74641796019426	0.351452743202093	0.516197236232975	0.778006346996534
Merged-chr18-80705354-1	chr18	80705254	80705454	+	632.0	f0_balb.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	2819.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	3.44808714754681	3.32592002855989	3.39203727635941	3.48367168319656	3.43730773662537	3.3177198844106	3.43520528194276	3.74076317661211	0.249678445605446	0.624625792109697	0.839569439847725
Merged-chr7-80427899-4	chr7	80427790	80427990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-22454.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	5.65212174655629	5.84668135330634	5.62702994414528	5.34883010557621	5.6762239843574	5.87780059451894	5.57220218121664	5.72419800942614	0.164329908513346	0.551749006923304	0.799073691139046
Merged-chr10-69888633-4	chr10	69888526	69888726	+	966.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170729, intron 16 of 40)	intron (NM_170729, intron 16 of 40)	-36906.0	NM_170687	11735.0	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	5.55305196367932	5.27142193537722	5.39207601981629	5.85278143746201	5.13387039636003	4.96693784485269	5.73170290432443	5.17001256835829	-0.477524096000035	0.158317735533775	0.445153637183645
Merged-chr10-8885393-3	chr10	8885288	8885488	+	965.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	682.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.95579360911319	4.58277599045922	4.21593417912283	4.02100997272833	4.13583880493013	4.60266193399628	4.24322631187222	4.50664822319797	0.39745304331937	0.355208026703741	0.661813745489821
Merged-chr17-45619120-4	chr17	45619011	45619211	+	938.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17009.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	4.62811794878606	4.70381290954	4.49668790282329	4.49037323541683	5.26217792029293	5.03051099658294	4.86924779115511	4.6258739594426	0.827612945182836	0.0186109752258883	0.12205225588665
Merged-chr12-108169093-2	chr12	108168993	108169193	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028262, intron 1 of 12)	intron (NM_028262, intron 1 of 12)	10191.0	NM_028262	52690.0	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	3.39486089340853	3.17051770098986	3.6933939743525	3.24739496863659	3.38811773034163	3.11870696297488	3.43608785403336	3.55100791774338	-0.00248228741277318	0.996427529659999	0.998602617451138
Merged-chr12-73046746-4	chr12	73046658	73046858	+	942.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009189)	promoter-TSS (NM_009189)	-46.0	NM_009189	20471.0	Mm.4645	NM_009189	ENSMUSG00000051367	Six1	BB138287	sine oculis-related homeobox 1	protein-coding	4.77981063631042	4.77064362617667	5.09009033900474	5.14145893686356	4.77460089515579	4.91636843948271	4.6787235626017	4.99171176845337	-0.25484845542588	0.450280207844206	0.735233969144434
Merged-chr15-36683062-4	chr15	36682948	36683148	+	891.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74075.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	4.12702615350709	4.082627939808	3.87124847494338	4.49112354854944	4.15367887046543	3.99248009169615	4.2407779065896	4.17077784193945	-0.10282696030625	0.814911970531337	0.92862301029334
Merged-chr2-126495997-1	chr2	126495897	126496097	+	687.333313	f0_balb.idr	intron (NM_001359975, intron 1 of 27)	intron (NM_001359975, intron 1 of 27)	3850.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	3.37417568453537	3.51288182960267	3.25965946448531	3.38825758522451	3.21567102852235	3.2431825159213	3.41472550909412	3.37280688302876	-0.279418848661572	0.593407241569388	0.822739598538124
Merged-chr13-5870054-4	chr13	5869951	5870151	+	975.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011803, exon 4 of 4)	3' UTR (NM_011803, exon 4 of 4)	8562.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	5.09304040389819	5.01072028306961	4.98841817780863	4.97167171510586	5.6091791294083	5.23499699179328	4.88978256485249	5.41563952355433	0.582366868886348	0.0694112090954283	0.281788304141149
Merged-chr7-122453998-3	chr7	122453903	122454103	+	865.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 3 of 16)	intron (NM_001316672, intron 3 of 16)	164878.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	2.91839978924916	2.65439463810168	2.86382444787051	3.13497889389755	2.4744665416652	2.41448964764937	2.39061738400637	2.68164672502847	-2.30885481090234	0.00366080840547789	0.0373420294487691
Merged-chr2-45114091-4	chr2	45113974	45114174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355289)	promoter-TSS (NM_001355289)	-795.0	NM_015753	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	5.63635687739682	6.13607445521376	5.63734355432628	5.05570218307335	6.07965731226934	5.99286163501645	6.02487381289426	6.011543021366	0.591833730871348	0.0593011083086823	0.256660582458056
Merged-chr9-71896595-4	chr9	71896494	71896694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253864)	promoter-TSS (NM_001253864)	-498.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	6.63398777587667	6.40709089133165	6.17109562051207	6.60651468867573	6.95310281207353	6.76439461548007	6.85268539542277	6.93254959605143	0.575057819091664	0.00768894927457124	0.0653560688338556
Merged-chr5-9032823-3	chr5	9032724	9032924	+	802.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-35678.0	NM_023733	74114.0	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	3.69405754877734	3.27199798888528	3.55040571725574	3.84167847887924	3.51679406777972	3.01477742256651	3.3167181064342	3.32682310675229	-1.02206591558114	0.0827297932381148	0.312458849010877
Merged-chr6-115468167-3	chr6	115468063	115468263	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 6 of 7)	intron (NM_001308354, intron 6 of 7)	46097.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	4.06360710654445	3.31523682225435	3.75927013194427	3.97576219425369	3.45215208675395	3.60228648278962	3.47300132749706	3.6545004211525	-0.82843821806217	0.116868436449892	0.378237899209161
Merged-chr13-51839808-3	chr13	51839709	51839909	+	960.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6866.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	3.84646707879152	4.11859838747606	3.53811923042744	3.81739417938053	4.41967121055044	4.26869217408395	4.07967958757285	4.09536690136279	0.998653064784951	0.025640781064701	0.151049223714138
Merged-chr9-110652490-4	chr9	110652398	110652598	+	810.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183276, intron 1 of 53)	intron (NM_183276, intron 1 of 53)	1663.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	4.15302579608022	3.8994707076097	4.06261418983404	3.80444545592518	3.8938769108509	4.18734247808914	4.0449040486138	4.27623176077125	0.341837271172015	0.426871116885683	0.718216318411019
Merged-chr3-97868247-4	chr3	97868130	97868330	+	857.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 1 of 46)	CpG	20477.0	NM_001289702	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	3.89923672929015	4.16463033137951	4.1006538230526	4.47602338194855	4.17364014279951	3.84527446593219	4.03620970347195	4.09818761987224	-0.376497163942943	0.396798115899361	0.695417666115148
Merged-chr15-59865338-3	chr15	59865244	59865444	+	889.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70385.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	4.08809526836212	3.83594008881887	3.59002566598963	3.70470054884344	3.61018036627447	4.08165812207839	3.63555597152985	3.95592963574238	0.0512713566634471	0.915554741317017	0.968742414000148
Merged-chr16-33345201-4	chr16	33345104	33345304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	35532.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	5.52491747424112	5.1135792576493	5.44560280517402	5.24897044483308	5.58619997334748	5.47413580906384	5.27312368532743	5.3561294196	0.182413294047393	0.53075428746525	0.78684021884675
Merged-chr8-115650417-4	chr8	115650330	115650530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56464.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	7.26832532059986	7.16587852760441	7.78567542141837	7.78350389089583	6.87959961420003	6.9287732175375	7.31535264443617	6.9517804210418	-0.689115011565892	0.00292457938411828	0.0313425821629882
Merged-chr4-43262983-4	chr4	43262767	43262967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081413, intron 38 of 39)	intron (NM_001081413, intron 38 of 39)	-4292.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	5.52343331976684	5.61611843446741	5.97554820858688	5.56347621867958	4.87935809789569	5.2553557812195	5.64859855097736	5.4650527839166	-0.597225927558651	0.0619498656402811	0.263296145912079
Merged-chr17-10982332-4	chr17	10982242	10982442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	141983.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	5.91265446582644	6.21385070207927	6.17811771009392	6.73644176301318	6.01414730729675	5.9647411633219	6.14646329145172	6.40861251031823	-0.266137905007919	0.344020807390928	0.652570542833357
Merged-chr7-133053031-4	chr7	133052932	133053132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	28828.0	NM_001347623	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	7.43497839792671	7.55455567811214	7.42647773001272	7.57517282261523	7.41091971906416	7.53304295770277	7.64527349622228	7.45997042624383	0.00838989317978987	0.961391234733838	0.986179966620764
Merged-chr5-122158211-4	chr5	122158074	122158274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013636)	promoter-TSS (NM_013636)	-105.0	NM_013636	19047.0	Mm.280784	NM_013636	ENSMUSG00000004455	Ppp1cc	PP-1G|PP1|dis2m1	protein phosphatase 1, catalytic subunit, gamma isoform	protein-coding	7.9596208971743	7.75928077187838	7.54142655684287	7.38636572742714	7.99148207706622	8.14503747855844	7.75032762381816	7.63559944959715	0.292706069450433	0.158388317117636	0.445212020688081
Merged-chr12-85372517-4	chr12	85372414	85372614	+	906.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 1 of 4)	intron (NM_026775, intron 1 of 4)	2203.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	5.07246873812505	4.89678069749587	4.59683331711496	4.90381980837894	4.81511257002572	4.63797297662321	5.16377664990291	4.79845687778747	-0.0224662496818193	0.948226022536032	0.981388084353081
Merged-chr8-57511715-4	chr8	57511613	57511813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008252)	promoter-TSS (NM_008252)	-130.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	9.66495050083754	9.7605353459987	9.89295560165851	9.89349732029844	9.51858053238984	9.49998816422429	9.66784890770426	9.34049346659337	-0.361628815388348	0.0130445629700821	0.0952208950515303
Merged-chr10-117282266-4	chr10	117282145	117282345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017372)	promoter-TSS (NM_017372)	27.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	6.65298047170593	6.78095600597202	6.79583454154408	6.22441691637395	6.79915714475838	6.30032171430899	6.6785300509876	6.41973186836545	-0.0667953179699361	0.789194725733457	0.91835324030065
Merged-chr17-84957329-3	chr17	84957230	84957430	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159496)	promoter-TSS (NM_001159496)	93.0	NR_027929	68531.0	Mm.249695	NR_027929	ENSMUSG00000097047	1110020A21Rik	2600015P10Rik	RIKEN cDNA 1110020A21 gene	ncRNA	7.36137782441532	7.75633013389405	7.92981771695101	7.45302429012274	7.89289046025033	8.03620146961096	8.12354734259279	7.71437967098816	0.40334335251843	0.0444318320383125	0.214909851362805
Merged-chr4-119536765-4	chr4	119536673	119536873	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004178, intron 1 of 3)	intron (NM_001004178, intron 1 of 3)	1996.0	NM_001004178	433752.0	Mm.425205	NM_001004178	ENSMUSG00000087385	Frg2f1	AA415398	FSHD region gene 2 family member 1	protein-coding	4.9905951745859	5.16783556924863	5.25392216778954	5.12511546201016	5.27907574173647	5.27018102454028	5.1364460200704	5.02396484212564	0.0912394008596503	0.759861200819804	0.905842932790046
Merged-chr1-179960419-3	chr1	179960309	179960509	+	784.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346805)	promoter-TSS (NM_001346805)	-351.0	NM_001359541	226751.0	Mm.259655	NM_001033285	ENSMUSG00000026490	Cdc42bpa	A930014J19Rik|DMPK-like	CDC42 binding protein kinase alpha	protein-coding	4.09346353509988	3.76549170094729	3.72964176840133	4.03217589281091	3.67367101385063	3.67745164717433	3.48749486828078	3.67374704087558	-0.868935235584809	0.0681272568335785	0.278643338169125
Merged-chr3-86141772-3	chr3	86141699	86141899	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016959, exon 2 of 6)	exon (NM_016959, exon 2 of 6)	869.0	NM_016959	20091.0	Mm.391785	NM_016959	ENSMUSG00000028081	Rps3a1	Rps3a	ribosomal protein S3A1	protein-coding	3.10054279132704	3.06809112602236	3.45771265225197	3.09622336237676	3.37466685853103	3.62652546611944	3.21913435053785	3.55550009717154	0.952484843119602	0.081463585537416	0.309632966036617
Merged-chr1-170535447-1	chr1	170535347	170535547	+	885.0	f0_balb.idr	intron (NM_001109985, intron 1 of 9)	intron (NM_001109985, intron 1 of 9)	21663.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	3.20980946469433	2.9912174056182	3.31306842693965	3.33264624874063	2.74654250912347	2.87429914206333	3.0276727039066	2.97436393511547	-1.37063653934615	0.0275041004138497	0.158212596358188
Merged-chr13-23716457-4	chr13	23716329	23716529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-5575.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	6.80139717651639	6.40951445397215	7.31034426115503	7.44151257912363	6.82508337554978	6.77640573641941	7.26408522629857	6.90906152029275	-0.146084909268292	0.594960248256476	0.823663823993926
Merged-chr14-50357806-4	chr14	50357714	50357914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_205819)	promoter-TSS (NM_205819)	-100.0	NM_205819	239081.0	Mm.291512	NM_205819	ENSMUSG00000051969	Tlr11	Gm287	toll-like receptor 11	protein-coding	5.80156952830457	5.55267907978707	5.40770581159381	6.44384625952523	6.48162987702619	6.45392377531381	6.17237275346501	6.54815094737519	0.802009417304785	0.0121616756592988	0.0907776753096923
Merged-chr9-99382712-4	chr9	99382602	99382802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24172.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	5.58441148648593	5.62650592374564	6.18035247690494	6.36213269599228	5.6127227100963	5.30168082553436	5.73914773605936	5.68921756438928	-0.65226320901315	0.0365833242030313	0.190376110063428
Merged-chr2-141008638-4	chr2	141008531	141008731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-337155.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	5.65677395542117	5.69712714249255	5.57684214920402	5.8568371835921	5.86692914959363	5.75246106845532	5.521400750742	5.97471638416553	0.129670991161396	0.625852878977896	0.840127910575481
Merged-chr12-26439507-4	chr12	26439358	26439558	+	957.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16994.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	6.68324692335966	7.47363728257584	6.83833555653342	6.7946733500811	5.45428979617266	5.53460972759435	5.3524471452072	5.26027170571353	-2.45500711680978	1.67543747435257e-17	4.04257505040481e-15
Merged-chr1-123919844-4	chr1	123919763	123919963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199021, intron 1 of 25)	intron (NM_199021, intron 1 of 25)	125696.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	7.30653958488418	7.66740255299475	7.66979704614522	7.72957821727475	7.69353939092681	7.37313395181278	7.43221783701563	7.00011999709933	-0.268340024114198	0.210053595507458	0.514518905489705
Merged-chr10-127668244-4	chr10	127668134	127668334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045171, intron 1 of 1)	intron (NR_045171, intron 1 of 1)	1111.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	6.27157367721728	6.46379703624517	6.38937122529493	6.04632866753741	6.81345746512695	6.93326065159011	6.92641831002391	6.85891371121225	0.862372825244531	6.13819687604019e-05	0.00134558273926598
Merged-chr5-124470733-4	chr5	124470715	124470915	+	748.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	intron (NM_030259, intron 1 of 3)	7420.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	3.5350667787139	3.55732706434235	3.93030422048925	3.69653099563831	3.73132813762705	3.70919817026042	3.27228026406736	3.74596959902158	-0.175043802951263	0.730987504511511	0.893388729114438
Merged-chr15-31352753-3	chr15	31352655	31352855	+	935.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	MLT2C2|LTR|ERVL	15004.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	3.50443313357497	3.32998600498324	4.06549215076501	4.1485941301182	3.38125463321562	3.43193707772593	3.37069325983244	3.6150710578591	-1.15327179572988	0.0415677452580163	0.206515707386078
Merged-chr9-73039637-4	chr9	73039465	73039665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308425)	promoter-TSS (NM_001308425)	134.0	NM_018889	55981.0	Mm.139905	NM_018889	ENSMUSG00000079469	Pigb	Pig-b	phosphatidylinositol glycan anchor biosynthesis, class B	protein-coding	5.46002321068968	4.59422375707643	5.83522807880467	5.42912146371175	5.42929521806786	5.52206496013796	5.12890669387731	5.40142618789943	-0.0373389036550984	0.919371996886354	0.970286153940659
Merged-chr15-99388851-2	chr15	99388751	99388951	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4096.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	3.00156269269607	2.89290019956229	2.94541261016115	2.90909135475878	2.99084187886885	2.56257074939933	2.9343205137083	2.68938376632466	-0.555450207330913	0.400321954681447	0.698147846003575
Merged-chr8-24424434-4	chr8	24424333	24424533	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	14513.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	4.96572719674376	5.07788314274158	5.41199437867492	5.58186374517626	5.39322786142677	5.61499054593865	5.59617910420499	5.7811556509023	0.511851328270867	0.10346457437701	0.35345099537249
Merged-chr1-181144299-4	chr1	181144203	181144403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026171)	promoter-TSS (NM_026171)	-99.0	NM_026171	67459.0	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	6.7309388048405	7.07393183503563	6.65264945137701	7.0487142618288	7.19458889126961	7.20864489645974	7.08988621431058	6.84485683184128	0.265409776985694	0.212993900611217	0.51810173096869
Merged-chr18-5334912-4	chr18	5334821	5335021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178722)	promoter-TSS (NM_178722)	-114.0	NM_001360447	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	8.1019137043965	8.34419570124851	7.83698448317845	8.10858425555823	7.94990921473677	8.20271913525483	8.14396868115044	7.91473398555717	-0.0735454382306019	0.683296774213418	0.870307072406269
Merged-chr16-23127808-4	chr16	23127696	23127896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145480)	promoter-TSS (NM_145480)	-66.0	NM_145480	106344.0	Mm.386835	NM_145480	ENSMUSG00000022881	Rfc4	A1|AI894123|AU040575|RFC37	replication factor C (activator 1) 4	protein-coding	7.43536296199344	7.29618383806695	6.90492865081625	7.09408400745806	7.44403281892132	7.64134921554367	7.4276161380324	7.34373418513068	0.36691651329258	0.0642119073460369	0.269298807034148
Merged-chr11-103374758-4	chr11	103374648	103374848	+	917.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 7 of 11)	intron (NM_183034, intron 7 of 11)	-11056.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	5.45166256466822	4.82613555165845	5.05662681741242	5.70181613855598	4.5405258076885	4.85398878175959	4.73659080301497	4.91294183133655	-1.08599832995243	0.00342354187672787	0.0354101116838167
Merged-chr16-91933382-4	chr16	91933290	91933490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1760.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	6.46636996079523	6.70933252194677	6.37853474526714	6.69588470883259	6.53215561863072	6.51765717420273	6.48491282408086	6.62429110503548	-0.0620515658436801	0.772066789060518	0.910726384110984
Merged-chr5-146757434-4	chr5	146757299	146757499	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 3 of 8)	intron (NM_011669, intron 3 of 8)	37557.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	4.54300837379461	4.56855016807684	4.62700914136271	5.11165787582692	4.816032465189	4.71850598695874	4.38882063552246	4.70212866975506	-0.184685148684525	0.631541770208531	0.843465834725077
Merged-chr18-3281914-4	chr18	3281821	3282021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311067)	promoter-TSS (NM_001311067)	-174.0	NM_001110855	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	6.46558692257551	6.29456332567802	7.2882595612481	7.16274215195693	6.96046130656338	6.68258405087339	7.05267217904889	7.21325695841833	0.155572797586981	0.579936479189298	0.815517916470182
Merged-chr19-18664084-3	chr19	18663989	18664189	+	637.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6691.0	NM_026120	67383.0	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	3.73305041965789	3.45138684587538	3.48215232677689	3.43036510527234	3.43852528520944	3.35130497015977	3.76107001643721	3.30222411393245	-0.15751997205798	0.76175099121903	0.90664336139973
Merged-chr2-102973084-7	chr2	102972969	102973169	+	955.1825560000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71404.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.30593514462942	3.52141485642728	3.42231504397836	3.30317174048485	3.4416745362878	3.5919701112781	3.23346714016243	3.47466284259016	0.183585075688752	0.72080325374796	0.88846247810902
Merged-chr11-60837999-4	chr11	60837849	60838049	+	975.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172112, intron 1 of 6)	intron (NM_001172112, intron 1 of 6)	7318.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	4.85780949305262	4.95031554610313	4.63045964131094	4.74636763030052	4.73229796824859	4.5840817040942	4.56741647895637	5.04823964755826	-0.106752926433896	0.760569956685182	0.906188529601021
Merged-chr4-119293949-5	chr4	119293884	119294084	+	998.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011732, intron 1 of 7)	CpG-10232	529.0	NM_011732	22608.0	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	5.14447352634861	4.67096730074736	4.81369637288326	4.66934933932568	4.97868018605781	4.91129326148116	4.82795536460425	5.05122989294667	0.24565631919769	0.464489941494819	0.745464276626538
Merged-chr3-21634993-4	chr3	21634916	21635116	+	980.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57E2|LTR|ERV1	-441636.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.16709426670474	4.96151343727964	4.81064213571927	5.10218987524874	5.309980257529	5.10462544187066	5.31542902040125	5.0674002873957	0.350201631268309	0.25599719668922	0.567581125814292
Merged-chr15-99484479-2	chr15	99484410	99484610	+	609.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9780.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	2.62148555665476	2.81560580114669	2.62182109902791	2.76330048709404	2.17287341714601	2.28741144286782	2.54973640331371	2.49081190970021	-1.99943272260899	0.0156306295906608	0.107985303662394
Merged-chr12-80231620-4	chr12	80231549	80231749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	28722.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	6.47271560837414	6.21002372430129	6.1589356557301	6.37378281260132	5.98701192623571	5.77354824700211	6.24080110117569	5.93822849130237	-0.484550864976986	0.0461201294960946	0.220513514972964
Merged-chr1-33900327-4	chr1	33900241	33900441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	7280.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	7.2734616803221	7.69904540223546	6.88804423709228	7.20689025027832	7.29279378712771	7.35356208181265	6.96061825920866	6.93792883659856	-0.205411914770234	0.384041489907534	0.685644380524807
Merged-chr14-55697460-4	chr14	55697338	55697538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-15621.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	6.34315400530767	6.5733646547818	6.2293048595108	6.34633646396989	6.57128055001148	6.40602714968936	6.36534404412143	6.33974198703225	0.0748236008875707	0.735390485980018	0.895556115614838
Merged-chr7-105633650-4	chr7	105633554	105633754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285871)	promoter-TSS (NM_001285871)	-83.0	NM_001285871	55992.0	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	7.53082141804002	7.07634964813685	7.09560742391453	7.14415562486403	6.97975771999529	7.1611550061536	7.23614135870939	6.72069320291112	-0.25163128605872	0.244887296409194	0.55598969318714
Merged-chr12-118748656-4	chr12	118748554	118748754	+	892.0125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97675.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	4.19925084991018	4.21302939066618	4.5985051869646	4.68550021085596	4.70287211817035	4.60928341437687	4.45845700470627	4.51707368200803	0.2682468635337	0.490846186489502	0.762545540982874
Merged-chr6-38938635-4	chr6	38938552	38938752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	19666.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	6.2267026335749	6.24763404435806	6.65220147615464	6.85060433064615	6.36408966099168	6.63467728861712	6.97899933321845	6.64745113752514	0.192752051569621	0.46063340381542	0.742687499720882
Merged-chr13-95347136-2	chr13	95347036	95347236	+	970.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16525.0	NR_034043	100217450.0	Mm.442313	NR_034043	ENSMUSG00000088108	Snora47	MBI-115	small nucleolar RNA, H/ACA box 47	snoRNA	2.61308795038623	2.48573184186174	2.68264800976014	2.87226481306886	2.82976111031893	2.85466038592928	2.97016832564489	2.8694893265343	0.90822065180312	0.175519716076694	0.470292409961339
Merged-chr17-37044869-4	chr17	37044818	37045018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20B|DNA|hAT-Charlie	-1048.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	5.65233240969893	5.90439165053364	5.87773855302802	5.98336451311327	5.9405709571567	5.77487776063681	5.87035815167586	5.85052228484252	-0.0114796600895558	0.963225289108923	0.98685387184598
Merged-chr12-3904113-4	chr12	3904022	3904222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 14 of 17)	intron (NM_153743, intron 14 of 17)	12378.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	6.43531638550623	6.66009846370297	7.0354226761576	7.06004870099467	6.54650138573527	6.59628841829254	7.05641855501489	6.93396201229882	-0.0495383684524086	0.841064608794724	0.939525416908854
Merged-chr4-43420010-4	chr4	43419917	43420117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 2 of 11)	intron (NM_001037709, intron 2 of 11)	9117.0	NM_177377	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	5.25574637385587	5.43228745017953	5.57687704955542	5.60802875416454	5.78952079267317	5.3306208288349	5.26348460350435	5.67169388294498	0.106332318317746	0.720534756711412	0.888306916367551
Merged-chr6-5093813-4	chr6	5093713	5093913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 6 of 15)	MLT1F2|LTR|ERVL-MaLR	100133.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	7.4624937815552	7.37507503997422	7.69230957782025	7.96531801472537	7.49516017435556	7.276362222139	7.66276718675206	7.66275471223214	-0.161601685483639	0.441837572768323	0.728675480159522
Merged-chr12-85346600-4	chr12	85346487	85346687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-7225.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	5.56321921505816	6.05567040397167	5.85621711899487	6.05553668392306	5.84738931318715	5.71347135511754	6.11946329749502	6.14660300411759	0.089409878370787	0.739372671397815	0.897284218525646
Merged-chr13-20112747-3	chr13	20112654	20112854	+	877.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	22247.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	2.77181798252352	2.61850277137828	2.68614064953966	2.2342504780336	3.69214400986234	3.5621210308687	3.99798643230074	3.32346153892363	6.96539224716306	2.63831799163934e-13	3.15618212314112e-11
Merged-chr6-17284059-4	chr6	17283978	17284178	+	786.891663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016900, intron 2 of 2)	intron (NM_016900, intron 2 of 2)	2893.0	NM_016900	12390.0	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	3.9594243189487	3.91432953481376	4.00462581883709	3.69212840044701	3.88871370316736	3.71253077766295	3.89679846566587	3.46739009986681	-0.37857719783753	0.426899731653063	0.718216318411019
Merged-chr14-103885107-2	chr14	103885007	103885207	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40631.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	2.99284609513875	2.94762587532324	3.10955770047525	3.42975721500413	2.78871568316031	2.97234733695656	3.04125103559564	2.72306918908265	-1.11927289770862	0.0839098785543826	0.314995055409651
Merged-chr13-23879830-4	chr13	23879737	23879937	+	804.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_121611, intron 8 of 12)	intron (NR_121611, intron 8 of 12)	9564.0	NM_001170638	20504.0	Mm.2656	NM_009198	ENSMUSG00000021335	Slc17a1	NAPI-1|Napi1|Npt1	solute carrier family 17 (sodium phosphate), member 1	protein-coding	4.58383592012168	4.92224390125376	4.88960241562394	4.67543821286036	4.6911664541445	4.62773811775022	5.05263345900745	4.62393276113404	-0.0206374798059122	0.953149043472593	0.983320469096829
Merged-chr5-96793464-4	chr5	96793400	96793600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013470, exon 1 of 13)	5' UTR (NM_013470, exon 1 of 13)	115.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	5.05086680812456	5.00364524336177	5.45878937021551	5.17046819117542	4.88497820550548	5.41402758009044	4.88409403829334	5.20999711961967	-0.137916778770125	0.676698344488158	0.867245059450191
Merged-chr18-38385141-5	chr18	38385042	38385242	+	860.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33765.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	4.32155909800759	4.39119199451747	4.40731330477758	3.81886087313348	4.19899791069012	4.35952975745815	4.3026262243032	4.66352991452074	0.354474313423058	0.407840947744257	0.704023641157503
Merged-chr13-77135449-4	chr13	77135311	77135511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145676)	promoter-TSS (NM_001145676)	57.0	NM_134071	105377.0	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	5.80269284559365	5.52973643004044	5.65171944075193	6.3881003933819	5.38024211620328	5.71751213670811	5.95081890601844	5.89154767428265	-0.262167228045649	0.416796774045743	0.710673328516556
Merged-chr15-38709697-4	chr15	38709635	38709835	+	893.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18781.0	NR_131206	105463124.0	Mm.432448	NR_131206	ENSMUSG00000115620	Gm45924	Borg	predicted gene, 45924	ncRNA	4.25204124882129	4.07953618068855	4.81612711939892	4.6856151802797	3.80928740541222	4.28264307254924	4.27981819892278	4.5439608478282	-0.580184182595975	0.206304608585758	0.510234737127369
Merged-chr7-141392152-4	chr7	141392059	141392259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011528)	promoter-TSS (NM_011528)	-1.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	7.3599954558913	7.4909802342328	7.23290042062606	7.06210626707637	7.65113597430171	7.59785214244754	7.47708935812354	7.39614711329661	0.334779354833138	0.0797351691655446	0.305773913368585
Merged-chr1-182369647-4	chr1	182369573	182369773	+	971.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28067.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	5.11837189527296	4.94491119518088	5.05351225317528	5.36954999726367	4.81554998767956	4.75182484681292	5.24360532421702	5.26628258442342	-0.206854373100766	0.54189022333181	0.793491190310592
Merged-chr11-3514801-4	chr11	3514720	3514920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_053267, exon 1 of 5)	5' UTR (NM_053267, exon 1 of 5)	136.0	NM_053267	114679.0	Mm.34046	NM_053267	ENSMUSG00000075702	Selenom	1500040L08Rik|A230103K18|Selm|Sepm	selenoprotein M	protein-coding	6.00878052542799	6.11806668951663	6.27751777123701	6.26491809722835	5.75979317961252	5.57357981931978	5.8913499178579	5.8468655597001	-0.640006759012903	0.00933765800385491	0.0751690973825366
Merged-chr4-155732781-4	chr4	155732661	155732861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026899, intron 4 of 4)	intron (NM_026899, intron 4 of 4)	-2043.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	6.36289953365147	6.74219020831873	6.62156416907557	6.7559412114007	6.38662633291703	6.65025577244438	6.81346405434205	6.64750584148356	-0.0208432295295598	0.925755618717357	0.972653537199917
Merged-chr11-57820269-3	chr11	57820147	57820347	+	673.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11900.0	NM_008213	15110.0	Mm.4746	NM_008213	ENSMUSG00000037335	Hand1	Ehand1|Hxt|Th1|Thing1|bHLHa27|eHAND	heart and neural crest derivatives expressed 1	protein-coding	3.63233082268517	3.12305368007541	3.34653502783842	3.46439117219646	3.03007986829087	3.08663536402293	3.16344309857534	3.0449490401912	-1.2647817742648	0.0294906385919547	0.165362703981152
Merged-chr18-89597281-3	chr18	89597173	89597373	+	718.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039173, intron 2 of 7)	Lx2|LINE|L1	171863.0	NM_001039173	623279.0	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	3.47301996391453	3.64658059571475	3.64880879593431	3.08139290317839	3.7105174125535	3.46105345858613	4.04640815367037	4.14016668579173	1.18961496292636	0.0278111854245664	0.159373026916932
Merged-chr12-40553804-4	chr12	40553700	40553900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	107747.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	5.04652423276977	4.9105984032565	5.17560427965607	4.78673985441814	5.19427567582051	5.00438145716663	5.08802284658639	5.26018456586831	0.334296890903221	0.286425617941966	0.598066504135974
Merged-chr8-70211910-1	chr8	70211810	70212010	+	1000.0	f1_balb.idr	intron (NM_001007570, intron 1 of 7)	CpG	371.0	NM_001007570	73095.0	Mm.185413	NM_001007570	ENSMUSG00000002346	Slc25a42	2900084M01Rik	solute carrier family 25, member 42	protein-coding	3.79905909916082	4.00262623366022	4.30146225345921	3.63540716244863	3.89543763701067	3.92178335608514	3.7283039086438	4.33555933712596	0.106221647010653	0.826817604959919	0.933571279466746
Merged-chr4-59415516-2	chr4	59415416	59415616	+	889.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 3 of 16)	intron (NM_001163288, intron 3 of 16)	23117.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	3.33398712130651	3.11468305227126	3.21868773366249	3.64964169525438	3.24177930502538	3.44745564667107	3.32149851027754	3.02220744049974	-0.332231908128774	0.569278898641678	0.809366519988776
Merged-chr17-44831390-3	chr17	44831289	44831489	+	731.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178652, intron 2 of 11)	RMER17C|LTR|ERVK	-16592.0	NR_073392	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	3.8421203504879	3.71951693736537	3.75086237178382	3.5104317471293	3.29520861296958	3.19471620768938	3.58461966037811	3.74854975978986	-0.755793358752136	0.157290038057895	0.443782607377631
Merged-chr1-63111041-3	chr1	63110935	63111135	+	763.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114609, intron 1 of 11)	B3|SINE|B2	3232.0	NM_001081436	227195.0	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584	INO80 complex subunit D	protein-coding	3.27060292997495	3.82066951755458	2.9790834405496	2.8845006330249	3.68749954714629	3.51555498319257	3.698887678621	3.80445309124204	1.23588259034724	0.0494802615690178	0.230178128110654
Merged-chr8-115423910-4	chr8	115423820	115424020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	282974.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	6.17119428296182	6.27819587487616	6.4233569382644	6.2646526759055	6.08968957677465	5.93216579146438	6.08006431637796	6.20693568042144	-0.310522744226268	0.174630600243886	0.469069910997419
Merged-chr2-113450109-4	chr2	113450004	113450204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	9040.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	7.02407958573567	7.16508657488166	7.34552543121788	7.5087784952767	7.05014228634375	7.13808768037835	6.93869709721405	6.85958092968227	-0.388818064013192	0.0575907469361102	0.251889626162307
Merged-chr12-100499711-3	chr12	100499598	100499798	+	677.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 2 of 19)	intron (NM_001033213, intron 2 of 19)	21124.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	3.77307113687848	3.67709467545796	3.68588996082019	3.94004199458713	2.93059996078564	3.01424000358018	2.89362928797473	2.89964960841523	-3.97860836880965	5.51036104501066e-07	2.02803510249645e-05
Merged-chr3-137980864-4	chr3	137980768	137980968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 1 of 8)	intron (NM_011932, intron 1 of 8)	681.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	6.54735220090982	6.68328773426192	6.25058049831878	6.48912885368309	6.23356577808524	6.55778531860074	6.34924253733868	6.09969512908527	-0.27969465392138	0.229932443398594	0.539096658041788
Merged-chr9-58534984-4	chr9	58534890	58535090	+	865.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133983, intron 3 of 6)	intron (NM_133983, intron 3 of 6)	5950.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	3.47331836869038	3.74343146795688	3.59511093434013	3.52148201059831	4.01521715300697	4.07130894972994	3.74293983649872	3.70424671289113	0.924430409286733	0.047323529657282	0.223965526427904
Merged-chr1-63658253-2	chr1	63658153	63658353	+	730.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081658, intron 10 of 14)	intron (NM_001081658, intron 10 of 14)	28674.0	NM_001081658	241073.0	Mm.297680	NM_001081658	ENSMUSG00000069085	Dytn	Gm215	dystrotelin	protein-coding	3.08998860342262	2.87860342605607	3.03391304499879	2.83655226083335	3.1574719504056	2.88425372637962	2.90306724484528	3.03232613540328	0.212650699463683	0.72145057989648	0.888772195300388
Merged-chr11-118483500-4	chr11	118483390	118483590	+	964.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153103, intron 7 of 13)	intron (NR_153103, intron 7 of 13)	6658.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	5.42162272459141	5.63631617819266	5.17865906497237	5.59896100400479	5.12445847536161	4.92971795741187	5.08494995221347	5.64611843796721	-0.455983944118433	0.160921636981787	0.449379779462773
Merged-chr6-72140593-4	chr6	72140495	72140695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-17398.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	8.49296154112565	8.68279691784058	8.86064303490401	8.78961290894046	8.36073225794184	8.65699362702724	8.56049859061906	8.4532806587602	-0.260057323255229	0.109661677023245	0.365647920939134
Merged-chr2-146872908-1	chr2	146872808	146873008	+	816.333313	f0_balb.idr	intron (NM_001033298, intron 4 of 13)	intron (NM_001033298, intron 4 of 13)	17019.0	NM_001033298	228730.0	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	3.83336433045526	3.71537342366068	3.9650976118175	4.19198626771903	3.24936948187472	3.3070683884704	3.38817170413319	3.39823694372325	-2.0990428115508	0.000100753294959309	0.00204316774413352
Merged-chr3-95434304-4	chr3	95434199	95434399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009709)	promoter-TSS (NM_009709)	-91.0	NM_009709	11863.0	Mm.250265	NM_009709	ENSMUSG00000015522	Arnt	D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051	aryl hydrocarbon receptor nuclear translocator	protein-coding	8.30408053932174	8.32720280829639	7.91380532709182	8.20730591373617	8.35052258602352	8.65576768877493	8.6930400420655	8.29437272331558	0.390612769954853	0.0313515062624193	0.172455089973164
Merged-chr7-45396416-4	chr7	45396328	45396528	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009224)	promoter-TSS (NM_009224)	-686.0	NR_126538	20637.0	Mm.216386	NM_009224	ENSMUSG00000063511	Snrnp70	2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Srnp70|U1-70|U1-70K	small nuclear ribonucleoprotein 70 (U1)	protein-coding	4.05088390496502	4.31883311981021	4.0515120901684	3.03455511999177	4.28210394482843	4.36277611857431	4.12603520163992	3.94818550572383	0.571387269851661	0.318458199064738	0.63033847433642
Merged-chr7-38106884-3	chr7	38106754	38106954	+	883.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007633, intron 1 of 11)	intron (NM_007633, intron 1 of 11)	636.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	3.34335175462312	3.52429228725607	3.76492894827524	3.52402206696716	3.81847178629908	3.98660667880958	4.02301484315001	3.95374732377977	1.18015271313889	0.0112265897638677	0.0856757191811238
Merged-chr3-108865858-2	chr3	108865758	108865958	+	856.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165965, intron 8 of 11)	intron (NM_001165965, intron 8 of 11)	24150.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	3.19133844590572	3.19371921749318	2.96625173703761	2.80267086673268	2.8372138815468	2.944761301662	2.8934082726702	2.90175885411462	-0.648859906125437	0.293830231707849	0.606204004660023
Merged-chr4-62353658-3	chr4	62353559	62353759	+	655.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 1 of 27)	intron (NM_001355385, intron 1 of 27)	6937.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	3.54077761623854	4.00547694263772	3.86347381729248	3.63197784435779	3.53466153762096	3.98539080479836	3.46700501881012	3.90770298473879	-0.0964020905474324	0.84822067704987	0.942625689889496
Merged-chr3-87349897-4	chr3	87349807	87350007	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-7974.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	4.31490651257731	4.57313105343958	5.34458826472159	5.15601473438878	4.75593546625517	4.87876814259843	5.00648445180551	5.15092384892356	0.0668192542314404	0.869237690042038	0.950903229636096
Merged-chr16-11063274-4	chr16	11063174	11063374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3024.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	7.01620816751024	7.77420855882476	7.40360124527454	6.28575970145749	7.34175207345728	7.30325682489762	7.16752519052224	6.17203063010059	-0.221849514559219	0.680041547270945	0.868593041138696
Merged-chr10-117909302-4	chr10	117909173	117909373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-16186.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	6.31440749785262	6.68341133749166	6.73894511983887	6.68809128871909	5.94145306032395	5.85637144047285	5.73082982451599	5.72793475780299	-1.21965798311874	4.25344348436774e-07	1.59849975593353e-05
Merged-chr2-127378327-4	chr2	127378235	127378435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15049.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	6.00077163162471	5.83228502435511	5.48027874921775	5.62335468624286	6.03111123268765	6.47770745452662	5.9495680201601	6.17661567491225	0.674418826471719	0.0117808570957405	0.0887245370696253
Merged-chr14-121455729-3	chr14	121455624	121455824	+	853.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49530.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	3.4354268506342	3.49593843096489	4.0623357620592	3.70431307096458	3.83784644973696	3.8543627291685	4.12227359083527	3.67746646251487	0.537451207680086	0.278796837041029	0.591009603347969
Merged-chr1-121431087-4	chr1	121430986	121431186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025156)	promoter-TSS (NM_001025156)	19.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	7.98945485642208	8.04816238552571	7.5248980643904	8.04444242839667	7.85424279726248	8.04132967052903	7.89077354919745	7.78991655759827	-0.0392496070264273	0.833554885282315	0.936365732465896
Merged-chr5-136986913-4	chr5	136986814	136987014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011962)	promoter-TSS (NM_011962)	-10.0	NM_001310748	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	6.93363071194636	6.96033402495837	6.26005109699431	6.56008861698541	6.78210017491953	6.77112850485707	6.97184939591009	6.65290173486434	0.13178409523934	0.579401468584137	0.815357109114363
Merged-chr17-10840295-4	chr17	10840224	10840424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016694)	promoter-TSS (NM_016694)	-35.0	NM_001317726	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	8.68067804326342	8.69953952221111	8.34713207903659	8.53879878964064	8.92147640425471	9.04716837581181	8.91278054491493	8.62735773173848	0.389966407391906	0.0197695799609248	0.127080107346788
Merged-chr9-61242337-4	chr9	61242236	61242436	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51473.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	5.44921943311802	5.58220045179889	5.03825078443419	5.19291203251725	5.50714592225837	5.21649529605248	5.31048818571228	5.33329647415878	0.0471249540333277	0.876544713490707	0.953664248988201
Merged-chr11-54927966-3	chr11	54927860	54928060	+	872.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271456, intron 9 of 18)	intron (NM_001271456, intron 9 of 18)	25106.0	NM_008161	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	3.63417036295052	3.31100615878518	3.12625641868999	3.36029875407097	3.69661812861156	3.65254475349015	3.3057710103608	3.31572106282477	0.483035414960718	0.376016096623029	0.678890741477518
Merged-chr5-130139582-4	chr5	130139468	130139668	+	887.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5320.0	NM_172509	212919.0	Mm.55812	NM_172509	ENSMUSG00000034110	Kctd7	4932409E18|9430010P06Rik	potassium channel tetramerisation domain containing 7	protein-coding	4.84414176623884	4.93670809379602	4.51192746314307	4.55588596438982	4.11278653561687	4.8052637169545	4.21227363008086	4.46609561688029	-0.678177571693748	0.0949674474365408	0.337196875888081
Merged-chr9-40766978-2	chr9	40766901	40767101	+	885.5	f0_balb.idr|f1_balb.idr	intron (NM_133733, intron 2 of 6)	LTR37A|LTR|ERV1	-34272.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.24675383160613	3.18169096588968	3.23872699114114	3.71942107009387	3.19113928886949	2.90704131657314	3.02357456615586	3.10341795683162	-2.2050503877052	0.00147113420605575	0.0183740764437344
Merged-chr15-63998208-4	chr15	63998118	63998318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360035)	promoter-TSS (NM_001360035)	-152.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	6.73224365480883	6.62060617447815	6.5252029656053	6.45155342014677	6.4487329062512	6.52859054461166	6.42569625866492	6.05669500751195	-0.293757341276215	0.194992323891246	0.495709083262081
Merged-chr17-62448271-4	chr17	62448193	62448393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	433024.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	4.96861970833426	5.52456060028227	5.13763440229656	5.64797835344014	4.80088978325668	4.35107788406267	4.98051262218247	4.92967991580275	-1.10366241684758	0.00280991775354824	0.0303639192014286
Merged-chr2-3424671-4	chr2	3424552	3424752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302684, intron 1 of 14)	intron (NM_001302684, intron 1 of 14)	521.0	NM_001302684	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	6.33010610269463	6.71660523201909	5.98259879873845	5.76077982064419	6.34259402444293	6.45218090219764	6.43376630488278	6.0246252059793	0.122208270330841	0.675350517790171	0.866686640327892
Merged-chr10-100160458-4	chr10	100160369	100160569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144648.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	5.15884504738492	5.12679502680844	5.65393700358994	5.42044617592151	4.96537896860281	5.36816751176633	5.29107022899203	5.31383688773353	-0.228244788323164	0.466557291794771	0.746420287776482
Merged-chr17-24152364-4	chr17	24152254	24152454	+	923.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1432.0	NM_001286662	18607.0	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	4.20453533687574	4.34232629396282	4.26614019757857	4.48467256704428	5.80489574125179	5.56189199039908	5.61522836785064	5.35785456779506	2.41016054788484	2.05339538122308e-11	1.76094734747081e-09
Merged-chr9-109059729-4	chr9	109059593	109059793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011637)	promoter-TSS (NM_011637)	30.0	NM_011637	22040.0	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	6.49177332815739	7.19383254775554	6.66646255458719	5.87653985075651	6.47159824186073	6.87163221116269	6.54100125425592	6.09522453500486	-0.168561995042654	0.600023711526875	0.826688621826227
Merged-chr2-153111568-4	chr2	153111489	153111689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	Tigger7|DNA|TcMar-Tigger	3121.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	6.85229962400937	7.39722614203539	6.89300100183622	6.47483706179539	6.68492444105789	6.73050650112774	6.662807138605	6.42326909813608	-0.43860679580034	0.0882244959230949	0.324007198590435
Merged-chr11-54972186-2	chr11	54972086	54972286	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9246.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	3.38172040815349	3.88280760568525	3.505119028339	3.20535719917487	3.59926645076832	3.68117128305825	3.92990373477621	3.66843037878318	0.658196321051683	0.209443617944212	0.513944471391425
Merged-chr3-133310112-4	chr3	133310038	133310238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146141)	promoter-TSS (NM_146141)	28.0	NM_001293641	74776.0	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	7.1744506474418	7.23710657395386	7.05818960700936	7.17916718909551	6.94248483798104	7.15924884797096	7.25696151224488	7.24677226670664	-0.0217690359251715	0.908256269954722	0.966035007914717
Merged-chr2-84505227-3	chr2	84505137	84505337	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046046, intron 1 of 2)	IAPLTR1_Mm|LTR|ERVK	1636.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	3.58779345033077	3.52351040958402	3.5882952268308	2.46148227962627	5.70555288665468	5.4973530840549	5.92372488981015	5.69177210851747	8.90570541217276	4.9719177448768e-25	3.07735767967466e-22
Merged-chr7-13037536-4	chr7	13037445	13037645	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243968)	promoter-TSS (NM_001243968)	82.0	NM_001243968	22192.0	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	4.78679244098196	4.66951551516739	5.21378410562085	4.66237796561092	4.11990171260482	4.80922967630319	4.6120287124074	4.70980924781661	-0.569214048225504	0.15301808898572	0.437539651946915
Merged-chr11-119091073-4	chr11	119090985	119091185	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4848.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	5.03126974083751	4.77498017065704	4.70487786366042	4.84409216884345	5.18944586074652	4.83989633903446	5.00748562541255	4.82034396176924	0.281846106121205	0.39227842631093	0.691857527785958
Merged-chr8-14816406-3	chr8	14816294	14816494	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 9 of 15)	T-rich|Low_complexity|Low_complexity	-72142.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.29119989707576	3.02301586154438	3.12947958771735	3.4295357929796	3.10409122530349	2.75138512243751	3.05970964595281	3.00724333466306	-0.981975615190073	0.116381283088753	0.377466253427817
Merged-chr16-23988056-4	chr16	23987991	23988191	+	952.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009744, intron 1 of 9)	CpG	761.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	4.56164426464639	4.56346607422004	4.52206083483366	4.09754779704399	4.58110462216324	4.84666148126116	4.12782672808915	4.70878879414484	0.342835907476424	0.401341285009102	0.698974096541789
Merged-chr10-88678207-1	chr10	88678107	88678307	+	593.5	f0_balb.idr	intron (NM_011461, intron 4 of 5)	B1_Mur4|SINE|Alu	4816.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	3.41048258140158	3.47326984523755	3.13753079454441	3.24042346857132	2.99699185348969	2.97585216651244	3.12643808802643	3.13597973605303	-1.03938390651071	0.0714190456882829	0.286832717544789
Merged-chr1-95762411-4	chr1	95762302	95762502	+	927.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45884.0	NR_040479	75381.0	Mm.417807	NR_040479	ENSMUSG00000100777	4930598F16Rik	-	RIKEN cDNA 4930598F16 gene	ncRNA	4.42603849280143	4.43210846901442	4.18173033311799	4.71430167209448	4.73411754062926	4.80342134098202	4.57279813033723	4.59119463310432	0.44875029735509	0.236924604837276	0.54700150657517
Merged-chr10-34328584-2	chr10	34328484	34328684	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347463, intron 5 of 10)	intron (NM_001347463, intron 5 of 10)	31163.0	NM_030203	72480.0	Mm.21485	NM_030203	ENSMUSG00000039485	Tspyl4	2610102M01Rik|B230210I21Rik|D10Bwg0791e	TSPY-like 4	protein-coding	2.41863753285496	2.22639731692306	2.48959187653213	2.52157126732054	2.51237110731791	2.72748690071513	2.67086760641193	2.7380566013398	1.24296051388638	0.0839658583906665	0.315091356869724
Merged-chr3-152479080-6	chr3	152478961	152479161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081277, intron 11 of 13)	intron (NM_001081277, intron 11 of 13)	82377.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	4.98524542100811	5.1495981875496	5.28801611017075	6.0525690960869	4.93752406601805	5.12717809016413	5.20082837428843	5.05610982505918	-0.699184175272686	0.0617173092180683	0.262832137898342
Merged-chr7-126794256-3	chr7	126794146	126794346	+	768.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177308)	TTS (NM_001177308)	-1699.0	NM_019674	56420.0	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|PP-X|PP4C|Ppx|pp4	protein phosphatase 4, catalytic subunit	protein-coding	3.34321853657807	3.22259753229793	3.02769401038112	3.02641776340839	3.52787818391365	3.51427985702527	3.33050700259877	3.44943172237895	1.11300367722	0.0358778452981493	0.188135343338512
Merged-chr7-140036558-6	chr7	140036436	140036636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133755)	promoter-TSS (NM_133755)	138.0	NM_001286007	74237.0	Mm.40888	NM_133755	ENSMUSG00000025474	Tubgcp2	1700022B05Rik	tubulin, gamma complex associated protein 2	protein-coding	6.87915657841641	6.84655164199071	7.27370254251596	6.61192840744415	6.89948573713726	7.00184412533319	6.88543329498332	7.15445346740346	0.105971308168753	0.635561026350177	0.845770982175053
Merged-chr16-95674604-4	chr16	95674497	95674697	+	980.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27810.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	5.09668475700248	4.86529929096253	4.96931591428134	4.88117726024585	4.85512095918492	4.75666019587601	5.01042350639169	4.82342202036477	-0.166231419207717	0.605174634888963	0.828698063423653
Merged-chr8-25226636-4	chr8	25226532	25226732	+	837.983337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25090.0	NM_177089	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	4.13707424968903	4.10585463487025	4.32485570191501	4.25353267087084	4.27270647744774	4.57913066866871	4.50429050203177	4.32213790721256	0.49828273407597	0.195740481409513	0.496617776733121
Merged-chr17-23193227-4	chr17	23193126	23193326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009555)	promoter-TSS (NM_009555)	2.0	NM_009555	22700.0	Mm.437934	NM_009555	ENSMUSG00000002617	Zfp40	CTfin12|NTfin12|Zfp-40	zinc finger protein 40	protein-coding	6.79577774161063	6.59146811769639	6.69536701425254	6.94138771321061	6.69713711633657	6.74547619049909	7.11127845430753	6.49483964955549	0.0136650881700517	0.952021170941401	0.982983229998955
Merged-chr3-27710094-2	chr3	27709994	27710194	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	CpG	358.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	4.52824924166759	4.8335465039449	4.43657920463255	4.8468344834882	4.77390265811926	4.56829940953829	4.71244674953181	5.20131245891312	0.30823197048425	0.408886891127079	0.704718274620071
Merged-chr8-104655160-3	chr8	104655054	104655254	+	942.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13426.0	NM_026753	68523.0	Mm.279	NM_026753	ENSMUSG00000031879	Fam96b	1110019N10Rik	family with sequence similarity 96, member B	protein-coding	4.04914281326326	3.80045509070381	3.55516664665608	3.91944872637237	3.51543220377749	3.60975955644683	3.90313687462222	3.72242465457589	-0.462925907744615	0.33879526517721	0.648145150521291
Merged-chr1-107525803-4	chr1	107525696	107525896	+	800.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001174170)	TTS (NM_001174170)	-3207.0	NM_001160307	241197.0	Mm.123919	NM_198028	ENSMUSG00000092572	Serpinb10	9830131G07|BB233602|Serpinb10-ps	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 10	protein-coding	3.9324321244292	3.73545004663518	3.88330806334666	4.39362235112945	3.70656614609461	3.95226107439593	4.00917138323567	3.71971765155208	-0.49772610126098	0.304036461697521	0.616746311013932
Merged-chr19-34571103-4	chr19	34570941	34571141	+	728.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008332, intron 2 of 2)	RMER17C|LTR|ERVK	-12488.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	2.93187877262508	2.94903329183847	2.93221660066086	2.82796675553197	3.06532712417874	3.22403497442639	2.9844623115117	3.11084838467186	0.805526486155555	0.157594831023619	0.4442375540545
Merged-chr11-117718957-3	chr11	117718852	117719052	+	830.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 4 of 21)	intron (NM_198022, intron 4 of 21)	60696.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	4.04999201409354	3.98180867954034	4.36309072281019	4.55306244507877	4.17216041731065	3.82766767990332	3.92983490090888	4.50896727721874	-0.322439135374637	0.489557344827449	0.761848799656158
Merged-chr14-60451810-4	chr14	60451708	60451908	+	744.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	73522.0	NM_001164705	72125.0	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	3.6171325295536	3.8611262939409	3.98402004834494	3.60533867215485	4.31243627030726	3.67374107951888	3.8234566528024	3.93521524904463	0.566254918474111	0.23934095199535	0.549703033561985
Merged-chr10-127577098-2	chr10	127576998	127577198	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 22 of 88)	intron (NM_008512, intron 22 of 88)	-42539.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	2.80023050935092	2.84625506427842	2.93753183853294	3.01089444799671	2.79060100997661	3.11207231113442	3.3130815474165	3.27736202879955	0.925588722634831	0.135415305110553	0.409658271465803
Merged-chr6-145276426-4	chr6	145276308	145276508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25856.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	8.258901922597	7.95904703582187	8.29392534214675	8.45003398846338	8.095012805256	8.21413414143944	8.25499229898984	8.19062036669899	-0.0896421349315916	0.603810191907127	0.828350269166784
Merged-chr16-30065745-2	chr16	30065645	30065845	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008235, intron 1 of 3)	intron (NM_008235, intron 1 of 3)	388.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	3.71814443774177	4.08150638943112	3.88041963742234	3.72784876605351	4.06238612846459	3.71666332146432	3.96080920734473	4.15060445395443	0.363892028729495	0.419190771806265	0.712267072793635
Merged-chr12-59133801-3	chr12	59133705	59133905	+	990.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165253, intron 1 of 22)	intron (NM_001165253, intron 1 of 22)	2352.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	4.86011885417072	4.45318164305418	4.95012428375447	4.59022187526699	4.46754420063994	4.08141289634658	4.26495953161438	4.12681845795573	-1.0684719886141	0.00883330323561398	0.0721602150878911
Merged-chr1-130918787-3	chr1	130918667	130918867	+	669.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7471.0	NM_021380	58181.0	Mm.103794	NM_021380	ENSMUSG00000026416	Il20	Zcyto10	interleukin 20	protein-coding	3.94278487666349	3.90504462022974	3.84412378056435	3.64213383936316	3.63630852193585	3.73989021916272	4.42512065029511	3.73462201765541	0.257049065156879	0.604382254714689	0.828475926678239
Merged-chr5-120516273-4	chr5	120516180	120516380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 2 of 13)	intron (NM_001177595, intron 2 of 13)	5088.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	7.44661177703381	7.79522820916123	7.6927142837855	7.72539774004279	7.71659509287435	7.68415751857334	8.0525323259314	7.53904615026328	0.1139239959048	0.549796023563951	0.798147832027397
Merged-chr13-9878675-4	chr13	9878588	9878788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033269, exon 5 of 5)	exon (NM_033269, exon 5 of 5)	-113367.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	6.34518268882038	6.66660284553599	6.88142950098234	6.77425314415719	6.6774055229829	7.07083914329823	7.26686149367499	6.82257561140022	0.403252539859241	0.0860175627739867	0.319595259636523
Merged-chr9-107624744-4	chr9	107624638	107624838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	10604.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	6.12518896759981	6.42388026193379	5.7645095408657	5.52391629086532	6.77363996347948	6.82601089722388	6.32345245524514	6.03497252141485	0.802434114148104	0.009611354232889	0.0767474290938755
Merged-chr13-119283614-3	chr13	119283514	119283714	+	916.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125397.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	3.8551739805236	3.7087878592764	3.44197564012463	4.08258945149149	3.99535265381661	3.69120622897902	4.1879644802888	4.0416607071198	0.507759337503296	0.309451426255549	0.621706598251255
Merged-chr12-108766643-4	chr12	108766550	108766750	+	986.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26661.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	5.09179563504232	4.5079274887831	5.03126983381613	4.87930470946071	4.49081343391305	4.67167992391679	5.06725180494505	4.96329316499629	-0.161868529762801	0.661285634328732	0.859320152400517
Merged-chr15-73137549-4	chr15	73137473	73137673	+	967.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 3 of 18)	intron (NM_153178, intron 3 of 18)	47161.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	4.52619548716056	4.29511193325645	4.64410939222853	4.28328833807862	4.58537663504133	4.48236375462642	4.23673923314916	5.02317912854753	0.397956593366419	0.320081710639244	0.631859556610888
Merged-chr2-35906628-3	chr2	35906528	35906728	+	594.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029774, intron 3 of 9)	intron (NM_029774, intron 3 of 9)	72996.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	3.6922894281315	3.546705522067	3.47781587701293	3.24974584016798	3.54542801381211	3.81235630538244	3.5752001628793	3.64021013838373	0.503702599938166	0.313088616467116	0.625019215603397
Merged-chr7-120834542-3	chr7	120834448	120834648	+	741.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8283.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	3.25837662116923	3.34768648049264	3.31802445730184	3.21938914006442	3.50431081244455	3.30806081534731	3.24728968424944	3.5768233599849	0.486448808505771	0.34831082951683	0.656203091647814
Merged-chr3-107142977-4	chr3	107142895	107143095	+	976.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40148.0	NM_001081140	242151.0	Mm.245155	NM_001081140	ENSMUSG00000042861	Kcna10	Gm1962|Kcna8|Kv1.8	potassium voltage-gated channel, shaker-related subfamily, member 10	protein-coding	5.40101924390304	5.0334060930319	5.62452963626442	6.18942495894324	5.42216039378018	5.0744173722716	5.84757510476108	5.71858931008899	-0.169389530642597	0.651508139217959	0.853996129818332
Merged-chr5-135168414-4	chr5	135168333	135168533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009745)	promoter-TSS (NM_009745)	61.0	NM_009745	12054.0	Mm.405834	NM_009745	ENSMUSG00000029681	Bcl7b	-	B cell CLL/lymphoma 7B	protein-coding	6.58544125628575	6.75913541168482	6.29383913511124	6.31001428319688	6.87799573058599	6.94508839487851	6.90509179658548	7.03021287211759	0.633779797658946	0.00332365395533117	0.0346035950488997
Merged-chr10-128094072-2	chr10	128093972	128094172	+	904.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_054078, intron 1 of 29)	intron (NM_054078, intron 1 of 29)	1289.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	2.73331372484484	2.33299867925034	2.53053777986963	2.50268871258433	2.82100260890583	2.9640141801055	2.78395895206673	2.73224740379014	1.47029149047766	0.0300445192492473	0.16744734286564
Merged-chr19-5457546-4	chr19	5457433	5457633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243307)	promoter-TSS (NM_001243307)	30.0	NM_198616	240514.0	Mm.329657	NM_198616	ENSMUSG00000095098	Ccdc85b	AI842788|BB115872	coiled-coil domain containing 85B	protein-coding	6.36842622456974	6.59134003456745	6.53817561161355	6.46330072779714	6.42410092946419	6.43305205421342	6.37239017895103	6.14925358871775	-0.206939325956695	0.341821661223784	0.650774975907341
Merged-chr4-121007439-3	chr4	121007353	121007553	+	637.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	9794.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	3.50583866028439	3.32820821917455	3.34496661665085	3.49179462911642	3.44912373994992	3.27030745954139	3.33268131879995	3.34324854404162	-0.241862118382613	0.639017886935619	0.847417964618581
Merged-chr14-15061374-4	chr14	15061277	15061477	+	927.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	240562.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	4.09113662051484	4.06240710058408	4.18853036951273	4.41512668936271	4.37828070100805	3.87124168283951	4.38217981503267	4.51255749448006	0.247479206830179	0.564128982279347	0.806599371831898
Merged-chr4-154207440-2	chr4	154207340	154207540	+	936.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162977, intron 3 of 36)	intron (NM_001162977, intron 3 of 36)	36727.0	NM_001162977	230971.0	Mm.275216	NM_172273	ENSMUSG00000057751	Megf6	2600001P17Rik|Egfl3	multiple EGF-like-domains 6	protein-coding	3.16856509481167	3.0003186784693	2.99649179651993	2.74108080665049	3.33440345837604	2.83090183369879	3.10165940158259	2.86607696172446	0.320526474962856	0.61264697974664	0.832832725096038
Merged-chr19-46328442-4	chr19	46328341	46328541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133694, exon 1 of 4)	5' UTR (NM_133694, exon 1 of 4)	257.0	NM_133694	68431.0	Mm.19973	NM_133694	ENSMUSG00000025226	Fbxl15	0710008C12Rik|Fbxo37	F-box and leucine-rich repeat protein 15	protein-coding	5.92728256435426	6.36753639097074	5.56968693608102	5.99871729944804	6.24999725547089	6.36459691137693	6.38809139514529	6.5105783845128	0.569949086020269	0.029129580657722	0.164089401472159
Merged-chr1-9826053-4	chr1	9825935	9826135	+	976.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177547, intron 1 of 16)	intron (NM_177547, intron 1 of 16)	-22246.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	4.65840177191112	4.45706230237668	3.94456177412827	4.77825559067818	5.02466529873468	4.7530983998158	4.7847240429468	4.96893671154583	0.792880975361652	0.0518603326409411	0.236943632385384
Merged-chr15-85113659-4	chr15	85113557	85113757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080470, intron 9 of 24)	intron (NM_080470, intron 9 of 24)	18300.0	NM_080470	140557.0	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	5.37676497283742	5.26001633418001	4.96125152385431	5.19197476584008	5.64812534960663	5.71729185007016	5.51616752227548	5.66392790833283	0.756526889650174	0.00665808769747166	0.0586384588243424
Merged-chr12-38854470-3	chr12	38854373	38854573	+	995.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347379, intron 9 of 11)	intron (NM_001347379, intron 9 of 11)	70762.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	4.0826260638807	3.73917027997344	4.36884357263997	4.28278355876463	3.65559987428438	3.64038788717971	4.34751983334709	3.88351569796505	-0.607264758640213	0.2268576441601	0.535554384719305
Merged-chr2-167950388-4	chr2	167950281	167950481	+	874.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	18054.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	4.11508187808256	3.86437708734311	4.36170312973019	4.20456864504536	4.1678905644527	3.53344057104321	4.00469784365115	4.15758673509489	-0.398170524532914	0.401897570970195	0.699446617376648
Merged-chr18-60626713-2	chr18	60626613	60626813	+	927.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2408.0	NM_177340	104027.0	Mm.252321	NM_177340	ENSMUSG00000043079	Synpo	9030217H17Rik|9130229N11|9330140I15Rik|AW046661	synaptopodin	protein-coding	2.62370975263978	2.78196836369678	2.6938620429616	2.81693946406703	2.58784879155372	2.93157113358525	2.81330886875672	3.04735758211514	0.527825376528789	0.417590676180839	0.711365277136606
Merged-chr5-146764808-4	chr5	146764690	146764890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 2 of 8)	MTC|LTR|ERVL-MaLR	30166.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	5.54000300730109	5.6177692589112	5.5113382301803	5.75337753838913	6.06703465491338	5.97930195911406	5.84414782858435	6.01835318039611	0.58158246904674	0.0215194195590854	0.134350562652061
Merged-chr2-32495480-4	chr2	32495378	32495578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39881.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	6.02016925578144	5.65130617206159	6.34423766973817	6.23066951297016	6.26049825951528	5.6743395708207	5.92410637011369	6.32283938333914	-0.0180699917949541	0.949814233835409	0.982086393814215
Merged-chr8-35634112-4	chr8	35634031	35634231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-45111.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	7.22779337753904	7.50202639694044	7.43943426147016	7.85954465431678	7.32323122825516	7.56741045019587	7.76809648133583	7.15336499624274	-0.0901494045560804	0.688333963830008	0.872728425878073
Merged-chr5-64683535-3	chr5	64683439	64683639	+	640.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72840.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	2.87343092715684	2.83149212710777	3.14653010354765	2.91611131631123	2.91986622193731	2.70791234226669	2.80211868762438	2.60349530855044	-0.805739140848733	0.218507906475732	0.525782572429468
Merged-chr18-38380339-4	chr18	38380252	38380452	+	885.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38555.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	4.31353308027861	4.24231616313486	4.39550034310842	4.11929016490406	4.44748296420042	4.04759892901414	4.1634705317669	4.08246904544007	-0.131846057175081	0.747960685460081	0.900777917633449
Merged-chr6-135296539-4	chr6	135296436	135296636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13848.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	7.22803106244696	7.11356004384891	7.27182692805306	7.30897324928699	6.99255887050238	7.22010750804952	7.22505319237736	7.16895092187945	-0.119712092964839	0.5169495916602	0.778590159440942
Merged-chr10-79834980-4	chr10	79834887	79835087	+	877.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	13966.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	3.47415661248037	3.95273568551849	3.599641331502	3.93422802667498	4.02635100365341	3.77568461398111	3.94492968754073	3.86649181186497	0.397513202610705	0.407268266178948	0.703598163111364
Merged-chr7-67484930-4	chr7	67484840	67485040	+	856.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112082.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	4.23243112234984	4.40927443095861	4.72246872073582	5.02276172135094	4.4473454142446	4.85705377787073	4.73614932050096	4.75579304609182	0.104059627258403	0.797814417393506	0.921862017583033
Merged-chr1-98095571-4	chr1	98095458	98095658	+	994.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013626)	promoter-TSS (NM_013626)	74.0	NM_013626	18484.0	Mm.5121	NM_013626	ENSMUSG00000026335	Pam	PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding	5.77302416236158	5.62596240897413	6.08648751986099	6.47673099935065	5.17753287397865	5.25274719048604	5.62104348159238	5.25277614350659	-1.19851647703008	0.00018157053125596	0.00335514248293561
Merged-chr7-92711795-2	chr7	92711694	92711894	+	760.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	29665.0	NR_015510	666737.0	Mm.473620	NR_015510	ENSMUSG00000074024	4632427E13Rik	AU015482	RIKEN cDNA 4632427E13 gene	ncRNA	3.17159549630969	3.33106705564502	3.24740186992163	3.10775377832039	3.94165144659094	3.9651545269836	4.32194606057084	3.92876507229481	2.66557637413858	1.21035967842684e-07	5.11592586405845e-06
Merged-chr1-40404788-4	chr1	40404671	40404871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24799.0	NM_001294171	17082.0	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	5.71091615236477	5.64398315682508	6.23383119100042	6.42142618461515	5.72775796876152	5.72527471395028	5.82832779977383	5.17171298087841	-0.676752505199082	0.034895270986497	0.184900892415611
Merged-chr4-59363241-4	chr4	59363140	59363340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 10 of 16)	intron (NM_001163288, intron 10 of 16)	75393.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	6.79611493116678	6.85782440801735	7.09694133813008	7.33628878522079	6.51116678769425	6.60108638439421	6.49790215971151	6.74945247239516	-0.654697726120805	0.00343483735290392	0.0354948153226405
Merged-chr7-143045513-3	chr7	143045418	143045618	+	857.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 1 of 4)	intron (NR_110355, intron 1 of 4)	-7232.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	4.10351387768333	4.01079583163443	3.75654884821453	4.21336287594863	3.87932601385143	3.87576896630822	4.08579582080772	3.8102233546698	-0.349380593823516	0.432622647896397	0.722596762180336
Merged-chr11-3181489-3	chr11	3181400	3181600	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 4 of 32)	intron (NM_030207, intron 4 of 32)	11963.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.42617901074232	5.2728730308846	5.68744023244333	5.28222013358516	4.50596748010118	4.18922212877688	4.39169299537306	4.40839637962347	-2.14372945164728	8.20244978586844e-09	4.41301718298057e-07
Merged-chr13-41883894-4	chr13	41883836	41884036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033545, exon 2 of 7)	non-coding (NR_033545, exon 2 of 7)	18021.0	NR_033545	100038577.0	Mm.387093	NR_033545	ENSMUSG00000113856	Gm10790	-	predicted gene 10790	ncRNA	5.89477847382815	5.69705002271888	6.40060280963957	6.11873846841903	5.44122481189275	5.62724275397604	5.59574052333994	5.53492215543451	-0.83336164085845	0.00291394423753138	0.0312555209287592
Merged-chr13-60712699-2	chr13	60712604	60712804	+	845.5	f0_balb.idr|f1_balb.idr	intron (NM_134062, intron 3 of 26)	MER58A|DNA|hAT-Charlie	73660.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	3.71150263468469	3.92407610187473	3.84834002196199	3.94349661725649	3.18041090474935	3.22815270628065	3.24656087449749	3.11355196401998	-2.50255171064851	1.43815825242364e-05	0.000382393224689064
Merged-chr17-73096714-4	chr17	73096610	73096810	+	850.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11275.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	4.62926108423871	4.58498516879492	4.38572049877646	4.28014208357531	4.59164407586364	4.37171514814443	4.32112699280711	4.73323945284316	0.119737967901331	0.752625358288634	0.902626829735826
Merged-chr13-81053770-3	chr13	81053666	81053866	+	691.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	intron (NR_015587, intron 1 of 1)	89692.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	3.65847971951374	3.3173343660304	3.6589698833237	4.00651901281443	4.05817447968639	3.83145275825567	3.69802279452717	3.71082189132841	0.403382026984591	0.43882788527721	0.726732530107543
Merged-chr3-51378258-2	chr3	51378158	51378358	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	18289.0	NR_028121	67749.0	Mm.273339	NM_026358	ENSMUSG00000037161	Mgarp	4930583H14Rik|AI195347|CESP-1|HUMMR|Osap|Qsap	mitochondria localized glutamic acid rich protein	protein-coding	2.85998924859453	2.8794148995716	2.79329255765062	2.65850341239556	2.83320853295805	3.0961047014676	3.0856974843563	3.09695586728359	1.03982452564683	0.0837674732301045	0.314679401271828
Merged-chr2-84831801-4	chr2	84831693	84831893	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4772.0	NM_013899	30059.0	Mm.21826	NM_013899	ENSMUSG00000027076	Timm10	Tim13|Timm13a	translocase of inner mitochondrial membrane 10	protein-coding	4.86059669068	5.15731856222603	4.66569694947199	5.09970088449258	5.16010306179027	4.61625202785572	4.76420121210495	4.89412625507752	-0.166646807512901	0.639299793656349	0.847559309975212
Merged-chr10-45018169-4	chr10	45017987	45018187	+	955.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49127.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	4.80641048385238	4.40935090777251	4.2181142291236	4.3922431374798	4.25802981160134	4.14072121033638	3.94449396920711	4.11834958123843	-0.841510496449319	0.0446424384023997	0.215741438327166
Merged-chr2-158500194-4	chr2	158500093	158500293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291138)	TTS (NM_001291138)	-2419.0	NM_145635	246747.0	Mm.28800	NM_145635	ENSMUSG00000044405	Adig	SMAF-1|Smaf1	adipogenin	protein-coding	5.75611522281398	6.33809848205924	5.94130057445528	5.72803653878553	5.54462856044066	5.80371178842229	5.70299732356088	5.53772076628882	-0.512355469036014	0.0696839156784308	0.28246672869101
Merged-chr1-79761740-4	chr1	79761652	79761852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111279)	promoter-TSS (NM_001111279)	17.0	NM_001111279	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	7.3530541939482	7.32866378203614	7.28045844106338	7.47017712426091	7.547097425752	7.63921049281579	7.64780970753322	7.10084837103403	0.183535415449529	0.350648108505399	0.658186562602986
Merged-chr5-124468021-3	chr5	124467886	124468086	+	800.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 3 of 3)	Tigger7|DNA|TcMar-Tigger	10249.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	3.72547271510288	3.96530529215216	3.72600534828647	3.59089285154658	3.75678353132522	3.73744533194254	3.43156413266286	3.56186443143497	-0.370508821067521	0.448045162005965	0.73332468018769
Merged-chr11-95417501-4	chr11	95417405	95417605	+	876.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359107, intron 1 of 9)	intron (NM_001359107, intron 1 of 9)	3422.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	4.23995062159107	4.20537519832813	3.59168958463134	4.03831645418935	3.90297948133472	4.36845057341795	4.04001894651009	4.47058073662477	0.427339701131528	0.362811822888833	0.668027464471291
Merged-chr2-120660668-4	chr2	120660561	120660761	+	759.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51066.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	3.84773262637014	3.70442361592098	3.84827184690424	3.92770618469543	3.86344202469087	3.96999018551435	3.98098762298744	4.39642836813113	0.61154909336625	0.17214418926297	0.465416805257196
Merged-chr15-8382466-4	chr15	8382392	8382592	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 1 of 45)	intron (NM_201232, intron 1 of 45)	61971.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	4.90950375047446	4.88087926942451	4.91031017760969	5.25616127315205	4.99860345675478	5.22073382593162	4.92272384932944	4.86997387854944	-0.0226126818063678	0.945373593378181	0.980467139069841
Merged-chr5-74964427-3	chr5	74964340	74964540	+	922.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045866, intron 4 of 4)	intron (NR_045866, intron 4 of 4)	15246.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	3.67157842271048	3.63458792147433	3.96449481547572	4.08374459109469	3.8761026684823	3.47916908761151	3.76169126718115	3.61424322532583	-0.483281949746028	0.330425158478499	0.641809469479239
Merged-chr2-59155557-4	chr2	59155447	59155647	+	880.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	Lx4A|LINE|L1	5136.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	4.48342116496714	4.35586709910985	4.13069161300955	3.82432835132346	4.49383499243407	4.57572732107251	4.16248815616474	4.40162815245163	0.505768200493608	0.23405902159074	0.543723238550186
Merged-chr9-35535261-4	chr9	35535161	35535361	+	927.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	23209.0	NM_013932	30959.0	Mm.291723	NM_013932	ENSMUSG00000032101	Ddx25	AW047046|GRTH	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	protein-coding	4.28470022675591	4.43203387974938	4.47051159188735	4.71983810862016	4.58994950206355	4.72582439564677	4.71875597848106	4.51008761869356	0.286314556356285	0.439815877699471	0.727425871224001
Merged-chr8-121113444-4	chr8	121113332	121113532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2739.0	NM_013519	14234.0	Mm.14092	NM_013519	ENSMUSG00000046714	Foxc2	Fkh14|Hfhbf3|MFH-1|Mfh1	forkhead box C2	protein-coding	5.89100362666549	5.86648945588854	5.6674651641269	5.82273128725548	5.88125211639788	6.1754097818864	5.97081176097784	5.86478715730787	0.250337994764378	0.309734070534599	0.621905822470584
Merged-chr2-170206492-1	chr2	170206392	170206592	+	646.0	f0_balb.idr	Intergenic	Intergenic	-63817.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	3.55296109148007	3.84027127786505	3.87593156642827	3.63624233310146	3.44361780583009	3.78953242721323	3.8110106977493	4.13041753115951	0.239055553532271	0.628877664789758	0.841823003934767
Merged-chr1-79776083-4	chr1	79775998	79776198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081210)	promoter-TSS (NM_001081210)	80.0	NM_001081210	69163.0	Mm.238455	NM_001081210	ENSMUSG00000026248	Mrpl44	1810030E18Rik|5730593H20Rik|AI463302	mitochondrial ribosomal protein L44	protein-coding	6.98533757896211	6.79345200061057	6.82836848803645	6.93443689505474	7.66638987839103	7.82228116456541	7.83972521026444	7.70223746826347	1.16200159786931	6.43228225536192e-11	5.07024826859807e-09
Merged-chr7-100964370-4	chr7	100964277	100964477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183168)	promoter-TSS (NM_183168)	-11.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	6.74590240911947	6.69604740352699	6.45867201194506	6.60256242098127	6.17955874790757	6.52854991815941	6.40851820706747	6.1681042725645	-0.45299789143443	0.0418360023060692	0.207226500218768
Merged-chr4-141507077-4	chr4	141506990	141507190	+	817.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	31507.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	4.14214337746515	3.75717479512139	3.55834417406891	3.75263327730804	4.02212978786647	3.978970231102	3.98984004119139	4.44197841083143	0.827493170630445	0.0734861830406093	0.29200429981843
Merged-chr7-27185218-2	chr7	27185118	27185318	+	657.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4069.0	NM_019394	12587.0	Mm.262447	NM_019394	ENSMUSG00000089661	Mia	CD-RAP|Cdrap|Mia1	melanoma inhibitory activity	protein-coding	3.11839284426335	2.95473750038855	3.17739800524678	2.65897554835778	3.18618202335918	3.23243864867557	3.41971913099691	2.92443765547947	0.867603913882702	0.162552955405333	0.451896454178887
Merged-chr10-61211918-4	chr10	61211803	61212003	+	842.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081127, intron 14 of 21)	intron (NM_001081127, intron 14 of 21)	36641.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	3.66891841285501	3.81302902801783	3.6693922178521	3.75284059980953	4.07908321583975	3.84417185532956	3.95665019991429	3.92579586843287	0.652063796136523	0.136836523040042	0.411399656746236
Merged-chr17-28226224-4	chr17	28226136	28226336	+	946.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027185, exon 9 of 11)	exon (NM_027185, exon 9 of 11)	-6518.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	4.91614535772159	4.63252552856157	4.53310971820594	4.44939139619015	4.84743298868714	4.66620699642467	4.8254462845779	5.09782524650282	0.49884656219687	0.15648422436851	0.442385837092944
Merged-chr9-94698234-3	chr9	94698085	94698285	+	920.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	28293.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	3.41122277292459	3.28143465797526	3.36003211071132	3.37933865812391	3.33340231016798	3.10448912807646	3.11910069740999	3.06336888656648	-0.719718182166105	0.194460829050107	0.494891206434022
Merged-chr12-111930932-2	chr12	111930832	111931032	+	993.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13550.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	3.31820513875145	2.94902030673376	3.05509519809354	2.87951264748295	3.03430947849981	2.75180609602995	3.04354155255076	2.99360543927538	-0.377189337514584	0.542113715241147	0.793675393131794
Merged-chr13-24338457-4	chr13	24338343	24338543	+	981.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284519, intron 2 of 17)	MTEa|LTR|ERVL-MaLR	11039.0	NM_001111110	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	5.01544089866581	4.72578263293748	5.14540472987427	5.2862221959722	4.40683909996523	5.08565897583868	5.02502556766107	5.28639758543858	-0.164190133571679	0.664142975145584	0.860887107151216
Merged-chr2-121413125-3	chr2	121413017	121413217	+	826.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007952)	promoter-TSS (NM_007952)	675.0	NM_153075	212670.0	Mm.384318	NM_153075	ENSMUSG00000033486	Catsper2	-	cation channel, sperm associated 2	protein-coding	3.80605145583478	3.51648054874056	3.90816173444826	3.87885785455901	3.99775987978948	3.81542190760949	3.98456224412545	4.12875930404384	0.549964554694544	0.22258001982205	0.530665658379289
Merged-chr10-99332814-4	chr10	99332726	99332926	+	950.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69595.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	5.08866495952333	4.97479412174312	5.6621556137685	5.17569494938623	5.1739026480837	5.01318502240491	4.8121827397211	4.70537747267499	-0.57020961588796	0.103778568588619	0.354081810639886
Merged-chr2-3641224-4	chr2	3641103	3641303	+	987.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72255.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	5.23415422107942	5.69400816643339	5.92473445845647	5.47505309988373	5.52856101068713	5.04164818232351	4.99783693794714	5.1292760555087	-0.699509822467163	0.0345837288109342	0.184049174876233
Merged-chr2-130274366-4	chr2	130274246	130274446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024193)	promoter-TSS (NM_024193)	-66.0	NM_024193	67134.0	Mm.29363	NM_024193	ENSMUSG00000027405	Nop56	2310044F10Rik|Nol5a	NOP56 ribonucleoprotein	protein-coding	8.07409350295897	8.27732415630596	7.47486304891698	7.62367351304941	8.32380717296596	8.090341049816	8.0557781984855	7.92886234787337	0.269344268664514	0.223440087669585	0.531514897079603
Merged-chr13-97239713-4	chr13	97239606	97239806	+	917.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1399.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	4.10808895180473	4.14696151472348	4.10869066444187	4.13447340956166	4.30869304095045	4.02148522862464	4.46145766479953	4.19937910652164	0.341098900349223	0.39303777101546	0.692266411611797
Merged-chr6-129234696-3	chr6	129234628	129234828	+	797.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040268, intron 2 of 3)	intron (NR_040268, intron 2 of 3)	3317.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	3.3006218318459	3.23862718348901	3.4624190338422	3.38873746243636	3.38101163767633	3.41281066872416	3.17069729147379	3.24074772250752	-0.160581742483102	0.760968973252238	0.906436350276476
Merged-chr12-40459108-4	chr12	40459015	40459215	+	906.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	13062.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.86176433928477	4.70627225376687	4.64145762824373	4.58609031828867	4.5881479969719	4.81474228469549	4.80525640541706	4.67806446056811	0.0535899685297267	0.875364409746747	0.953166842407926
Merged-chr5-66279821-4	chr5	66279725	66279925	+	787.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302833, intron 7 of 12)	L1MEg|LINE|L1	18984.0	NM_027602	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	4.62810588922674	3.92874373186452	4.33632144367509	4.45157114676081	4.49275474880729	4.68451460240953	4.44936004010734	4.89343606536217	0.617622923804191	0.128002475993913	0.39814229325165
Merged-chr5-21189210-4	chr5	21189105	21189305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 1 of 26)	intron (NR_153365, intron 1 of 26)	2938.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	8.29224953311867	8.47010177005653	8.32554582390141	8.16335868172701	7.82778337403646	8.14675253624599	7.64149460397423	7.45264719502306	-0.67262167949172	0.000635401829882442	0.00934254634356586
Merged-chr6-116193097-4	chr6	116193038	116193238	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 1 of 5)	CpG	236.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	5.05539589565372	4.67827401730225	4.79134536125932	4.6744795914373	4.80856220936155	4.92689066515552	4.61347527635707	4.63172764042313	-0.0943253886261312	0.785164245117931	0.916424075220537
Merged-chr7-100501845-2	chr7	100501780	100501980	+	993.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	8522.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	3.02282322923113	3.00594972414883	3.02325022360185	2.64595009915226	2.69725197113127	2.652740676426	2.76244190989739	3.27939981652226	-0.249498040488052	0.715062551507961	0.886010584897636
Merged-chr11-121091179-4	chr11	121091054	121091254	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10015.0	NM_145373	209588.0	Mm.69553	NM_145373	ENSMUSG00000025165	Sectm1a	BC010462	secreted and transmembrane 1A	protein-coding	5.07946280358701	5.49167600590748	4.68714325784158	4.83794655495271	5.15080615257161	5.55241833269177	4.87511185663931	5.32269322090516	0.346922092830348	0.338461346826063	0.648052191142766
Merged-chr6-129471579-4	chr6	129471469	129471669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020008, intron 1 of 5)	intron (NM_020008, intron 1 of 5)	1210.0	NM_001309637	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	6.34225836021287	6.49429240887143	7.09661173379777	6.49706811244032	6.36011159249376	6.5398304670416	6.48802955434854	6.6725808498601	-0.173455370896141	0.486644143123149	0.760308994317476
Merged-chr6-124662936-4	chr6	124662813	124663013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145130)	promoter-TSS (NM_145130)	-191.0	NR_149320	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	8.9240609428094	9.08404222172635	9.04006833248403	8.81086238400172	8.99822573016809	9.03781088240289	9.13888805848677	8.99625692969114	0.0967532451107071	0.508518184093935	0.773535236506654
Merged-chr5-122637963-3	chr5	122637841	122638041	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5970.0	NM_001038839	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	5.41975439186481	5.65644618248908	5.06763686407687	5.1702687925992	4.29382442054586	4.46299926138869	4.30911013957155	4.32505015851719	-2.12665199519765	1.43674410021492e-08	7.39985588344411e-07
Merged-chr11-70230528-4	chr11	70230424	70230624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007528)	promoter-TSS (NM_007528)	-726.0	NM_007528	12029.0	Mm.12930	NM_007528	ENSMUSG00000000317	Bcl6b	Bazf	B cell CLL/lymphoma 6, member B	protein-coding	5.29119404917223	5.59464535698977	5.1669638176699	4.77605136754543	5.24228043143886	5.46558169314044	5.23579466725194	5.09600899209495	0.066879698146249	0.843657021852501	0.940687425136507
Merged-chr10-93311016-3	chr10	93310913	93311113	+	999.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013508, exon 1 of 5)	5' UTR (NM_013508, exon 1 of 5)	146.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	5.22273876233454	5.31486138781017	4.85910702877049	4.74547617945053	4.9386068697647	4.25271404847	4.42785077592201	4.34464843158822	-1.06977045101069	0.00986975821331383	0.0781532450623501
Merged-chr15-12373743-4	chr15	12373644	12373844	+	991.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081064, exon 19 of 24)	exon (NM_001081064, exon 19 of 24)	52248.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	4.99536864766755	4.86412766890311	5.35873782653465	5.44701766530325	4.44473794220128	4.62570349733791	5.19390334663497	5.2737016729263	-0.511835845936462	0.189362175282352	0.488240753999997
Merged-chr10-86887043-4	chr10	86886919	86887119	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 42 of 68)	intron (NM_138673, intron 42 of 68)	108014.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	4.67294263953925	4.57959099662231	4.7518302041169	4.86329594842039	4.71542925746407	4.92447875914066	4.6521038947367	4.98920941962834	0.187249313463312	0.584036969810162	0.817501676178582
Merged-chr1-91096696-4	chr1	91096607	91096807	+	969.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 10 of 22)	intron (NM_008515, intron 10 of 22)	43263.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	4.89523713087304	5.5023718410221	5.63743755826699	5.60227718034027	5.57175035100789	5.08021068807533	5.65638366601941	5.70462632245096	0.136421931921316	0.677845504624996	0.867901229919819
Merged-chr3-144696734-4	chr3	144696645	144696845	+	913.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 9 of 10)	intron (NM_001282037, intron 9 of 10)	23590.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	4.03410966333287	4.53095126802936	4.6732601120484	4.58428456266722	4.83090276389128	4.37887812440145	4.6147784957436	4.3444304222617	0.187220662514108	0.644898595778262	0.850573912153132
Merged-chr15-96699771-4	chr15	96699670	96699870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175121)	promoter-TSS (NM_175121)	-42.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	6.25774166668585	6.39680656717384	6.05355283557658	5.99097521587982	6.47248250802622	6.50750652809136	6.2820924848147	6.11434093290816	0.273267748747083	0.257145821345264	0.568869652403216
Merged-chr14-8095563-4	chr14	8095469	8095669	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2642.0	NM_145458	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	5.65584068710398	5.39088729173683	6.01549324682711	6.29385503990697	5.82405614932365	5.09435551137156	5.72713524397249	5.39535934196789	-0.571874725443756	0.0943878043890406	0.33612994079664
Merged-chr10-17408045-4	chr10	17407943	17408143	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-312261.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	5.68967131871931	5.42320344901707	5.80477536990084	5.62395562979046	5.44449504619467	5.57153840843896	5.42751187027379	5.19705392905742	-0.38206691034012	0.171741055033395	0.465087374685055
Merged-chr2-19049768-6	chr2	19049605	19049805	+	909.865051	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51386.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	3.77112056669884	3.38986005929897	3.6735291521549	3.45994146891621	3.91383614518824	3.62670249396132	3.49746111259562	3.56525365212194	0.302213043229316	0.546051388545856	0.79612035364506
Merged-chr19-60892386-3	chr19	60892264	60892464	+	842.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	2615.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	3.75466265510746	3.80834326037533	3.75522081215549	3.25950818582311	3.73785943212939	3.8245855713187	3.68921655072712	3.41643801056703	0.0720245350010347	0.889517457707932	0.958587720774722
Merged-chr5-38039968-4	chr5	38039857	38040057	+	886.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	727.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	4.02711772753273	3.78082169406095	4.02771996278504	4.08685621176426	3.83645301113311	4.15091836228746	3.96314685334257	4.02528430998368	0.00126485640532249	0.997661145604406	0.999032258328017
Merged-chr11-117810147-4	chr11	117810040	117810240	+	882.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009304, intron 1 of 3)	CpG	473.0	NM_009304	20973.0	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	4.10765148430559	4.70645141966613	4.05783715134541	3.53574183437463	4.35398730360492	4.23571387439841	4.35488362506361	4.15426935170651	0.25885029265245	0.599985393692292	0.826665382737919
Merged-chr17-47923717-4	chr17	47923622	47923822	+	970.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028767, intron 1 of 16)	CpG	910.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	5.50027473108311	6.3983657572406	5.38731670091375	4.36653032983767	5.86345477928519	5.65121997458149	5.02441874170493	4.79313403621144	-0.379218701190862	0.616055925788066	0.834812498791735
Merged-chr12-52383141-4	chr12	52383024	52383224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGGTG)n|Simple_repeat|Simple_repeat	97485.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	5.85131741685906	5.91798234753714	6.24795785632043	6.00858749722083	6.04051652152523	6.02839901783097	6.04511454003878	6.11218118912757	0.0677616563174548	0.776734914952295	0.913014097434423
Merged-chr15-58980782-2	chr15	58980682	58980882	+	910.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	46972.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	2.85280105771151	2.90943355776082	3.13172664226824	2.9914409188098	2.52639943448698	2.60430429782733	2.49433584669775	3.07879062590295	-1.31897969031357	0.0721220312365681	0.288548932684373
Merged-chr11-62574418-3	chr11	62574332	62574532	+	887.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011706)	promoter-TSS (NM_011706)	-54.0	NM_011706	22368.0	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	3.67815564489038	3.44069519978376	3.95677389823253	3.32642080558951	3.45514125189097	3.50684245041895	3.71335797693995	3.86824536948837	0.0968930104961079	0.853704675344442	0.944903737664624
Merged-chr18-34416080-4	chr18	34415980	34416180	+	924.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016927, intron 4 of 14)	intron (NM_016927, intron 4 of 14)	6657.0	NM_016927	53871.0	Mm.445792	NM_016927	ENSMUSG00000014503	Pkd2l2	TRPP5	polycystic kidney disease 2-like 2	protein-coding	4.99011999835815	5.06836910494073	4.35031392512944	4.50339859711649	4.99798263879718	4.88429232990872	4.72618489084222	4.58337739000702	0.11393600983976	0.767360861380896	0.909004900573458
Merged-chr17-80801511-4	chr17	80801404	80801604	+	890.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73479.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	3.82079791227507	3.95850705271945	3.93119372483517	4.06797233877503	4.08814757168891	4.34061751869986	3.96632601242811	4.37003314328043	0.621205301109388	0.144850013598595	0.424036712956412
Merged-chr11-79522162-4	chr11	79522076	79522276	+	785.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077496, intron 1 of 1)	intron (NM_001077496, intron 1 of 1)	1586.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	4.48849733865632	4.43658591568453	4.16359376472935	3.98456729720168	4.49309763974664	4.53545552346057	4.46826095949799	4.9877517936002	0.837607761525063	0.0374902520084445	0.19335177820005
Merged-chr1-138267879-4	chr1	138267786	138267986	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5852.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	5.00547752025652	5.08114941516687	5.04218929969114	5.3688498434353	5.31927360004327	5.3807788818943	5.18235012597344	5.10763703825754	0.184310143464141	0.550414875900113	0.798628080141532
Merged-chr13-34064079-4	chr13	34063902	34064102	+	854.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026512, exon 6 of 7)	exon (NM_026512, exon 6 of 7)	14006.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	3.67197820487117	3.48866394786232	3.72452621412542	3.62729320575728	3.7555768949118	3.99011537454615	3.54837704691042	3.67042245773556	0.367265819092358	0.437204402792497	0.725557644444268
Merged-chr11-50130911-4	chr11	50130806	50131006	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290759)	promoter-TSS (NM_001290759)	-454.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	5.59451255972422	5.33428739948174	5.56990149163263	5.26795117788073	5.6024541557167	5.90554602269331	5.12297707604474	5.40049489518812	0.177340539010211	0.566947445701681	0.808119800518362
Merged-chr2-75775897-4	chr2	75775795	75775995	+	958.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56282.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	5.10007512033951	4.9519078375888	5.24889246516864	4.54668535388819	5.2763342596093	4.74469622121991	4.83643909422413	5.0656518352801	0.0719686970360378	0.844152245331896	0.94088019607581
Merged-chr7-132931654-2	chr7	132931554	132931754	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207302, intron 1 of 9)	CpG	512.0	NM_001362198	360216.0	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	5.34798909965807	5.1266233892285	5.34891690394426	5.0057596473065	4.9737533311935	5.21131131386017	5.20683093743908	5.16682840579142	-0.119206804666143	0.698843390361702	0.878505428649175
Merged-chr15-97831742-6	chr15	97831746	97831946	+	865.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204276)	promoter-TSS (NM_001204276)	-79.0	NM_001204276	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	3.86264358563803	3.38709062940986	3.56574716679428	3.3741884140547	3.80517761174537	3.36691266168731	3.70719195343878	3.81587677472435	0.429267084621562	0.403550810481185	0.700922982752502
Merged-chr11-82566268-4	chr11	82566181	82566381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67072.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	6.44095590532834	6.37866910188417	6.42446335363149	6.63432472347172	6.40079610454395	6.66958533035072	6.50956398103437	6.75974420401665	0.145411715007753	0.509031240978424	0.773874003577432
Merged-chr19-11581423-2	chr19	11581346	11581546	+	671.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23358.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	3.32318279979153	3.14015265379451	2.72135225187551	2.90680990849949	2.74482873394284	3.0426544509948	3.04524103671173	3.11320641860879	-0.198021230632767	0.757786848474387	0.904860090778916
Merged-chr13-95032707-2	chr13	95032607	95032807	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172263, intron 17 of 19)	intron (NM_172263, intron 17 of 19)	56363.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	4.35008598042172	4.01143009289303	4.27105720522684	3.90029263668215	3.97614948823144	4.35650503040685	3.76111984146562	4.09216268009321	-0.195029490157237	0.664586574605671	0.861038748318263
Merged-chr17-48825695-4	chr17	48825599	48825799	+	974.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-106883.0	NM_027452	70530.0	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	5.71541452241807	5.4444774221837	5.60143194081352	5.68477655307828	4.89824741913722	4.78102161144557	5.27721510641487	5.17179512649586	-1.04429949818293	0.000610172862315928	0.00905632238990147
Merged-chr10-63031916-2	chr10	63031816	63032016	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026085, intron 1 of 9)	Lx6|LINE|L1	7404.0	NM_026085	67307.0	Mm.368563	NM_026085	ENSMUSG00000020072	Pbld2	3110049J23Rik|Mawbp	phenazine biosynthesis-like protein domain containing 2	protein-coding	3.10291088377571	3.08399130976071	2.85442991775105	2.59920228812162	3.17301245989001	3.03098663625856	2.97398866285433	3.10159952670074	0.653211296003822	0.298291260174402	0.610415249057119
Merged-chr5-151070006-4	chr5	151069914	151070114	+	949.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359985, intron 3 of 12)	intron (NM_001359985, intron 3 of 12)	117407.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	4.85877055915283	4.84210640586111	4.31867726269567	4.82234620061725	4.5633658034055	4.49981783719618	4.80192819436102	4.92228787961437	-0.0644570272207525	0.861700018318071	0.947809474991843
Merged-chr15-97110839-3	chr15	97110737	97110937	+	765.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54881.0	NM_027052	69354.0	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	3.155539267012	3.09724485100555	3.3196287822229	3.11800529618149	3.12853310867078	2.85667194552186	3.02392826752239	3.36771424397409	-0.245216651138249	0.676366014101995	0.867097153109958
Merged-chr8-122576862-4	chr8	122576768	122576968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009698)	promoter-TSS (NM_009698)	39.0	NM_009698	11821.0	Mm.1786	NM_009698	ENSMUSG00000006589	Aprt	C85684	adenine phosphoribosyl transferase	protein-coding	6.83725805977377	6.84152415695006	6.72679927535238	6.87742746080128	6.54189635728073	6.87349849815575	6.53809339101583	6.49914402921503	-0.300006932537678	0.147158554312519	0.427939308793208
Merged-chr9-111145720-4	chr9	111145596	111145796	+	958.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027742, intron 3 of 13)	intron (NM_027742, intron 3 of 13)	27585.0	NM_001164838	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	5.17600955201477	4.99800966761236	5.11307124883165	5.47970908976356	5.14973983778091	4.8719291296306	5.02154667684786	5.17333104930567	-0.298444419598553	0.353878523637628	0.660687722859088
Merged-chr3-61426096-4	chr3	61425990	61426190	+	918.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61583.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	4.86346465514784	4.25625695550439	4.48132852910929	4.97721441870802	4.76619850712696	4.61275119071878	4.7382663530173	4.52235766320259	-0.0530222078567113	0.891991426986864	0.9596010491436
Merged-chr7-98711213-1	chr7	98711113	98711313	+	875.0	f0_balb.idr	intron (NM_001355114, intron 4 of 5)	intron (NM_001355114, intron 4 of 5)	7966.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	3.71890891428393	3.39378267244315	3.62812544967364	3.75514347329998	3.28969705006264	2.98972454856748	3.10049424447061	3.42068147836586	-1.51001638903947	0.00952585324732883	0.0762324566583072
Merged-chr11-58610194-2	chr11	58610081	58610281	+	784.5	f0_balb.idr|f1_balb.idr	intron (NM_144544, intron 5 of 5)	MLT1F2|LTR|ERVL-MaLR	3311.0	NM_144544	78354.0	Mm.58038	NM_144544	ENSMUSG00000037145	2210407C18Rik	Ep1	RIKEN cDNA 2210407C18 gene	protein-coding	2.99603548856561	3.48898981520271	3.05809757882444	3.69472446632017	2.55332094346442	2.90270782590456	2.71021105564267	2.63689697889771	-3.3907871484534	5.47035356353229e-05	0.00122270031093793
Merged-chr13-91221726-3	chr13	91221621	91221821	+	852.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 1 of 7)	intron (NM_025770, intron 1 of 7)	2266.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	3.288897258164	3.19155663465036	3.4647017392567	3.51771957361281	3.68226050531017	3.46245430572566	3.39610554856926	3.7524330351397	0.68291881130366	0.19224103153731	0.491824448203475
Merged-chr4-119124959-4	chr4	119124873	119125073	+	910.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 2 of 9)	MIR3|SINE|MIR	16228.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	4.17930066093151	4.62412302537532	4.71929990595588	3.98932783780633	5.48387245308592	5.47278026923145	6.02599094940303	5.82869310989121	2.56083634307408	1.72976700452726e-12	1.77155518870857e-10
Merged-chr16-57569183-4	chr16	57569087	57569287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	MIR|SINE|MIR	19945.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.47305566265471	6.54174348696346	5.9740895365469	5.89576968554838	6.47110037639887	6.4245090931926	6.19769363345457	5.87193444719757	0.0333102973462343	0.905875650039796	0.96505706729402
Merged-chr16-31933795-8	chr16	31933666	31933866	+	984.03125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172822)	promoter-TSS (NM_172822)	-85.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	3.98233073257854	3.6863223136183	3.93112386236525	4.16011747446099	4.3932382804424	3.99958508429253	3.91515998581088	4.47750834620472	0.671101950138993	0.143481619031677	0.42182435855639
Merged-chr6-38900317-4	chr6	38900235	38900435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-18651.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	6.8244159660312	6.87465509020126	6.29068081246839	6.92680530805006	6.94025593640338	7.14796244153907	6.99717783772608	7.19487418783642	0.425056411324267	0.0569031117129441	0.249910939014972
Merged-chr5-67764973-1	chr5	67764873	67765073	+	661.5	f0_balb.idr	exon (NM_009727, exon 12 of 36)	exon (NM_009727, exon 12 of 36)	82458.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	3.64088545138491	3.36368235048813	3.43046749683236	3.48452139174712	3.58177363369257	3.48474592950133	3.47320353462699	3.53847389577234	0.135543969208259	0.78253516263819	0.91529005173258
Merged-chr5-88765003-4	chr5	88764917	88765117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007832)	promoter-TSS (NM_007832)	4.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	9.01891439472293	9.03575185103209	9.31786365525566	9.19725382899477	9.23812030599829	9.09744794985972	9.55825771387599	9.18174534169385	0.163833751760346	0.322985164282591	0.634480350181337
Merged-chr5-33782840-4	chr5	33782744	33782944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019694)	promoter-TSS (NM_019694)	-140.0	NM_019694	56384.0	Mm.260538	NM_019694	ENSMUSG00000005299	Letm1	-	leucine zipper-EF-hand containing transmembrane protein 1	protein-coding	7.36829223714711	7.45009214048531	7.36955635158275	7.970219462306	7.76398985668436	7.57856586125544	8.060755917536	7.5682582175485	0.235778575618614	0.290646579156915	0.602869066641471
Merged-chr10-10553147-4	chr10	10553053	10553253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	5054.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	5.39675227343629	5.40219104337008	5.18813361226	6.14915332778114	5.07213991005159	4.58087939921385	5.06357362213903	5.33746584724978	-1.07002345033114	0.00621808107262112	0.0557286316630696
Merged-chr7-44312086-4	chr7	44311975	44312175	+	849.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034115, intron 1 of 24)	intron (NM_001034115, intron 1 of 24)	1811.0	NM_001034115	243961.0	Mm.360368	NM_001034115	ENSMUSG00000038738	Shank1	-	SH3 and multiple ankyrin repeat domains 1	protein-coding	3.37437405567296	3.86066204609858	3.8973301395535	3.29949502306143	4.07574691395623	3.86636470200398	3.83180538780306	4.1142771448555	1.02163675569144	0.0424761512627952	0.209275972224995
Merged-chr15-58877075-2	chr15	58876975	58877175	+	767.833313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026642)	TTS (NM_026642)	4426.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	2.70465917694278	2.57196515159724	2.63090743849184	2.89563066611942	3.12503491341336	3.01507550998536	2.89497868866768	3.27698158033628	1.58716449273813	0.0195270123256886	0.125932156412992
Merged-chr13-120299480-3	chr13	120299361	120299561	+	839.3110960000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037925)	promoter-TSS (NM_001037925)	-931.0	NM_001037925	625360.0	Mm.327506	NM_001037925	ENSMUSG00000094796	BC147527	-	cDNA sequence BC147527	protein-coding	3.95890201242541	4.29688232847977	3.95948489334436	3.96300726730726	3.69800960660145	3.61304348344966	4.20379735669995	3.9571274888226	-0.454149861019208	0.33298235022685	0.643932741578704
Merged-chr14-78815681-3	chr14	78815596	78815796	+	734.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33482.0	NM_027906	219189.0	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding	3.08974628380023	3.1164081125316	3.43849529670981	3.48643020564173	2.62965505253467	2.63735523310368	2.60817797462215	2.76642948555881	-3.485604697708	3.05119448717658e-05	0.000737707107346269
Merged-chr12-79141637-4	chr12	79141561	79141761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	MMAR1|DNA|TcMar-Mariner	10873.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	6.95714958168077	6.90623235198077	7.32768683316134	7.32282190264375	5.97263038619877	5.71643196828288	5.88869389913525	5.48670420005539	-2.00996153195484	2.24084914845686e-15	3.86201940770003e-13
Merged-chr10-8007448-4	chr10	8007349	8007549	+	986.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51326.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	5.8984076829024	6.3140354556643	5.82993462323712	5.80460164837204	5.89922647286871	6.02873325737274	5.75198093815576	5.30455038598159	-0.322617744977701	0.269995568319367	0.581767511754897
Merged-chr9-118811139-4	chr9	118811044	118811244	+	998.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 4 of 13)	ORR1E|LTR|ERVL-MaLR	99452.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.81728608412873	4.86531836856033	5.42936096044898	5.37143712168804	4.57175182763268	4.486876247593	4.97630797265278	5.21550412777273	-0.611585122876826	0.11292013506799	0.371420623567672
Merged-chr3-107867260-4	chr3	107867147	107867347	+	874.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9983.0	NM_133867	99662.0	Mm.108491	NM_133867	ENSMUSG00000040600	Eps8l3	AI504489|Eps8r3	EPS8-like 3	protein-coding	4.08523097959024	4.5127012034484	4.08580644106255	4.4935988426537	4.10145679318603	4.26278058086488	4.53894695134247	4.40499643861375	0.0165291110696408	0.968379342759395	0.988694268692349
Merged-chr16-14362172-5	chr16	14362059	14362259	+	988.840027	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008576, intron 1 of 30)	intron (NM_008576, intron 1 of 30)	601.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	4.48129384782966	5.06486346838258	4.96812115187063	3.96045523396914	5.38863546327222	5.43870877653413	4.76367486697575	4.61823011598768	0.811555646458005	0.0726997885458873	0.290094082795589
Merged-chr3-146352384-4	chr3	146352315	146352515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26529.0	NR_033542	100038607.0	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	-	predicted gene 10636	ncRNA	6.0870846010116	6.25910272559241	6.27670801589204	6.44615287131538	6.31018377289828	6.63344366617787	6.65402228151391	6.69733084068048	0.422518682767072	0.0678016067444077	0.277838185299054
Merged-chr2-132054080-2	chr2	132053980	132054180	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001355430, exon 16 of 16)	3' UTR (NM_001355430, exon 16 of 16)	-24092.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	2.98525521980293	2.9391764209338	2.71066024015142	2.74452618737711	3.14620262989162	3.32722538620447	3.0919382330755	2.98411923448465	1.25257033205309	0.034916671138343	0.184989485296324
Merged-chr16-48833840-4	chr16	48833745	48833945	+	976.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8707.0	NM_020509	57262.0	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	5.92510671766827	5.09331262509675	5.92615709981444	6.18712779947237	5.69768090034129	5.58228003346471	5.80747527102313	5.83314052069988	-0.195584103377065	0.544263728106199	0.795184841840149
Merged-chr2-148407378-6	chr2	148407256	148407456	+	942.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009378, exon 1 of 1)	exon (NM_009378, exon 1 of 1)	832.0	NM_009378	21824.0	Mm.24096	NM_009378	ENSMUSG00000074743	Thbd	AI385582|CD141|TM	thrombomodulin	protein-coding	3.95203095491396	4.09428518940462	4.35456174780255	4.38685112141054	3.90219041773212	4.1272355540447	3.88377124424822	4.09864099236255	-0.568969478653968	0.186272773466067	0.484125681380109
Merged-chr3-148986986-2	chr3	148986911	148987111	+	601.333374	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32376.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	3.07376409446341	3.06545739070002	3.23701475029962	3.17377789984768	2.92059043253343	2.99438673746831	2.9430436689199	2.81785760056949	-0.948560939883731	0.110210559393997	0.366573710612399
Merged-chr1-52158940-4	chr1	52158840	52159040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205313, intron 24 of 24)	intron (NM_001205313, intron 24 of 24)	39318.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	5.72090671464821	5.38185381467058	6.00055295921251	6.2174538465212	5.36997786223239	5.37526690789283	5.48579256532919	5.19056339835688	-0.884839616413628	0.00448031402173497	0.0438235910063313
Merged-chr9-72791866-4	chr9	72791748	72791948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15426.0	NM_175485	235472.0	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	6.30398172342888	5.85059524689342	6.10291701199752	6.18656194206782	5.81644266523022	5.93881913099789	5.6238717881129	6.13779720254901	-0.367792039416187	0.156605109594795	0.442622105140087
Merged-chr2-68886295-4	chr2	68886196	68886396	+	890.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	RMER10B|LTR|ERVL	24855.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	3.77895921817499	3.59238652086352	3.77948321611671	3.95749749368503	3.90235549394731	3.60153137857336	4.00111284401663	4.10093730769819	0.344125066526933	0.462992988230859	0.744468292617172
Merged-chr14-54913101-1	chr14	54913001	54913201	+	812.0	f0_balb.idr	promoter-TSS (NM_001360406)	promoter-TSS (NM_001360406)	31.0	NM_001360406	59049.0	Mm.27435	NM_021551	ENSMUSG00000022199	Slc22a17	1700094C23Rik|24p3R|AU041908|AW555662|BOIT|Boct	solute carrier family 22 (organic cation transporter), member 17	protein-coding	3.8402492402675	3.70585257276683	3.60817914879203	2.7458278194155	3.37093324133511	3.30878050516436	3.64162174333116	3.32274758928443	-0.425349361118981	0.51262611805601	0.775932258524376
Merged-chr9-59537854-4	chr9	59537731	59537931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1709.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	4.91938696587568	4.6315268437758	5.28130629729695	5.34991962002853	4.73946160063032	5.30348738391678	5.03883638275003	5.46286565332782	0.133415405077905	0.719956533470582	0.888028373825666
Merged-chr2-30473668-2	chr2	30473568	30473768	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030244, exon 1 of 1)	exon (NM_030244, exon 1 of 1)	531.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	3.18331414456212	3.30534414396873	3.85257783963317	3.47250282090355	3.29492015132165	3.36252363788913	3.35897315590344	3.53394020275593	-0.299071231638972	0.586009228539853	0.818516944044141
Merged-chr3-95142000-3	chr3	95141896	95142096	+	956.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027206, intron 1 of 1)	intron (NM_027206, intron 1 of 1)	364.0	NM_027206	69769.0	Mm.34368	NM_027206	ENSMUSG00000013707	Tnfaip8l2	1810019A08Rik|AW610835|TIPE2	tumor necrosis factor, alpha-induced protein 8-like 2	protein-coding	3.80232737643097	3.56388420591946	3.42159045008101	3.6424923663291	3.60375070379334	3.59904158168283	3.91866552702886	3.70279412961978	0.291263048479232	0.54501982136195	0.795692049322578
Merged-chr16-3894931-4	chr16	3894850	3895050	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_153801)	TTS (NR_153801)	10331.0	NM_001290689	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	5.39585948143317	5.20091139025073	6.01713332266853	5.91655956357047	5.25758463203735	5.03733552763171	5.42740364753296	5.42234878308764	-0.675402392469605	0.0410005482644816	0.204780425962138
Merged-chr4-102495682-4	chr4	102495561	102495761	+	798.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177983, intron 2 of 5)	intron (NM_001177983, intron 2 of 5)	-74399.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	3.98952806994349	3.74385940630332	4.26257490161449	4.01054974690887	4.30627389804008	3.95026685412564	4.2826318301715	4.0850483743749	0.413689941333473	0.337318907926696	0.647045967113309
Merged-chr18-80468125-4	chr18	80468019	80468219	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 1 of 12)	intron (NM_026295, intron 1 of 12)	1548.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	5.20858149871667	4.7615948763576	5.01728971161975	5.33943352738949	5.03024360206032	5.00862236391737	4.9583406864704	5.20586191308597	-0.11664763155358	0.722819015920741	0.88928524667289
Merged-chr11-49846716-4	chr11	49846605	49846805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163672)	promoter-TSS (NM_001163672)	-46.0	NM_001163671	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	8.65559655742008	8.74125626602101	8.68352805036178	8.64263161232365	8.6802182192418	8.9380069323735	8.74877636663308	8.74202985701345	0.121970519388027	0.403159189962242	0.700650887226461
Merged-chr15-100737861-4	chr15	100737780	100737980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5143.0	NR_045782	619313.0	Mm.123436	NR_045781	ENSMUSG00000116504	I730030J21Rik	-	RIKEN cDNA I730030J21 gene	ncRNA	6.92740136057548	7.13481100893467	7.29046037517151	7.18690666401901	7.33598013111831	6.86961477460432	7.18126856999904	6.95047097947836	-0.0489722955432339	0.812628755647418	0.927656717651261
Merged-chr10-99261882-5	chr10	99261803	99262003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1328.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	6.15199887359248	6.52435637144198	6.04794556356914	6.20702848323107	6.16556147099031	6.24588488534679	5.97274336473263	6.14868911490523	-0.170036052324025	0.479808963185847	0.755498776476173
Merged-chr6-130092608-3	chr6	130092505	130092705	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013793, intron 3 of 7)	intron (NM_013793, intron 3 of 7)	-25334.0	NM_001252577	16635.0	Mm.333431	NM_010649	ENSMUSG00000079852	Klra4	Chok|Klra32|Klra33|Ly-49d|Ly49d|ly49r<129>	killer cell lectin-like receptor, subfamily A, member 4	protein-coding	3.7100632158298	3.55882734176071	3.71061198071692	2.44602804306223	6.25088012283568	6.15817900628546	5.83863968602052	6.10451551667059	9.7964433953514	2.4540211021334e-26	1.80077080442014e-23
Merged-chr5-86191455-1	chr5	86191355	86191555	+	624.0	f1_c57bl6.idr	intron (NM_001310653, intron 1 of 1)	intron (NM_001310653, intron 1 of 1)	6446.0	NM_001310653	14715.0	Mm.26791	NM_010323	ENSMUSG00000029255	Gnrhr	-	gonadotropin releasing hormone receptor	protein-coding	3.04886991528615	2.89232990104307	2.91857122455209	2.72560909547999	3.34012214984568	3.28165802867649	3.15549609143649	3.22192645105447	1.51163590272777	0.00819059008060235	0.0682268006257688
Merged-chr12-31654886-4	chr12	31654789	31654989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028002)	promoter-TSS (NM_028002)	20.0	NM_001163126	238123.0	Mm.173068	NM_001163126	ENSMUSG00000035933	Cog5	5430405C01Rik|C87247|D18362|GOLTC1|GTC90	component of oligomeric golgi complex 5	protein-coding	6.68280065831905	6.81737654929098	6.69914336711872	6.76476518531452	6.63108927074725	6.91965984242688	6.88490845038326	6.76761490801847	0.0744712083925542	0.710270569148397	0.884037714929946
Merged-chr13-56615424-4	chr13	56615293	56615493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 2 of 16)	intron (NR_155548, intron 2 of 16)	5807.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	5.18781036692742	5.49132209614413	5.28082796040555	5.22110121077375	5.21790020104305	5.04333509179988	5.19446684376242	5.05103038147315	-0.302405534587772	0.310491134994823	0.622616866559057
Merged-chr15-58418270-4	chr15	58418148	58418348	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145959, intron 1 of 23)	intron (NM_145959, intron 1 of 23)	2780.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	4.58759250015687	4.42428760615015	4.46893333949855	4.8065764905964	4.36377203189884	4.36856385740127	4.36329199784359	4.46610074448673	-0.473464834862204	0.206282480516546	0.510210725476936
Merged-chr3-95263417-4	chr3	95263318	95263518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173347, intron 4 of 7)	intron (NM_173347, intron 4 of 7)	-12225.0	NM_134253	171388.0	Mm.331209	NM_134253	ENSMUSG00000028115	Bnipl	1700128A13Rik|BNIP-S|BNIPL1|BNIPL2|PP73|PP753	BCL2/adenovirus E1B 19kD interacting protein like	protein-coding	5.846342365914	6.08489498041569	6.13661491757189	6.25652497671287	5.96766493073807	5.97418837088321	6.16318974147521	6.24612158115367	-0.0210592934173833	0.93138563664041	0.975279137937273
Merged-chr10-117412840-4	chr10	117412748	117412948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	34587.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	6.914820611399	6.97948079673537	6.90241292624617	7.01084852743207	7.28090339915004	7.03801917571261	7.3010432801338	7.09934838131846	0.319138777060055	0.0893047384488082	0.326114404783897
Merged-chr5-24101062-4	chr5	24100984	24101184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161800, intron 1 of 9)	CpG	494.0	NM_001161800	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	5.2079558876384	5.05509267357699	5.32766889865996	5.11778796750987	5.16271717810262	5.47094712602356	5.11981788536174	5.03930908202541	0.056512585151454	0.852312546291061	0.944430754968762
Merged-chr19-4100947-3	chr19	4100904	4101104	+	912.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008851, exon 1 of 23)	5' UTR (NM_008851, exon 1 of 23)	382.0	NM_008851	18739.0	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	3.91676395754201	3.35748217905123	3.36664816879031	3.12292890086072	3.34334324062465	3.76699599679454	3.57968807744472	3.53946782835563	0.307975453706333	0.582023950647556	0.816501953640427
Merged-chr8-34964375-3	chr8	34964295	34964495	+	575.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 1 of 26)	intron (NM_175091, intron 1 of 26)	1295.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	3.28116230394742	3.16902254168116	3.28158560711777	3.08608554304524	3.47124104104794	3.33416684676732	3.43087531749652	3.33670679243404	0.734707710096947	0.157179003646928	0.443633112612697
Merged-chr3-9713716-4	chr3	9713621	9713821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	-103636.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	5.85493121433611	5.68857386917371	6.28328932708532	6.56839273058132	5.94316057557379	5.5438818280768	6.06644155129533	5.89928889964985	-0.441211816960008	0.148311815636454	0.430071295027352
Merged-chr5-121386535-5	chr5	121386447	121386647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163470)	promoter-TSS (NM_001163470)	-932.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	5.19800356113102	5.10618472997566	5.26252559468686	5.39090895825204	5.24035234117559	5.52521282802765	5.3818355057705	5.28953325824969	0.182713795458361	0.530863165789665	0.786869282179433
Merged-chr11-46276915-2	chr11	46276815	46277015	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 7 of 30)	intron (NM_001252459, intron 7 of 30)	35443.0	NM_001252460	76884.0	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	3.0059651327587	2.49796694746869	2.55508277095871	2.62960611028564	2.912878118345	2.94077219146797	2.93863664247618	2.89090261201448	1.08907681474966	0.097900949730826	0.342853220216013
Merged-chr11-74638597-4	chr11	74638484	74638684	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001013784, exon 4 of 4)	3' UTR (NM_001013784, exon 4 of 4)	-10911.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	5.60890780250396	5.56841793417578	5.63545368117257	5.83133144453843	5.44728590206535	5.17464082348773	5.70365482240666	5.55323578642247	-0.326200819559319	0.246119443906474	0.557382624811293
Merged-chr1-75168988-4	chr1	75168897	75169097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026846, intron 1 of 8)	intron (NM_026846, intron 1 of 8)	262.0	NM_026846	68818.0	Mm.32646	NM_026846	ENSMUSG00000026197	Zfand2b	1110060O18Rik|C81256	zinc finger, AN1 type domain 2B	protein-coding	6.72319585083993	6.78490289049519	6.35206595604159	6.12952481132073	6.57657889269323	6.49130952809487	6.67606901536505	6.50647936541924	0.0776272750913124	0.751800051642759	0.902294431953731
Merged-chr19-5912863-4	chr19	5912757	5912957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291078)	promoter-TSS (NM_001291078)	14.0	NM_011262	19708.0	Mm.2651	NM_011262	ENSMUSG00000024826	Dpf2	2210010M07Rik|BAF45D|Req|ubi-d4	D4, zinc and double PHD fingers family 2	protein-coding	7.55685993189675	7.50732182701237	6.92406738359904	6.9868569771844	7.41068322381215	7.54066335557445	7.37596718310639	7.42674378691856	0.227616313952295	0.295981187555746	0.607853870026531
Merged-chr11-120358077-4	chr11	120357970	120358170	+	942.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3464.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	4.65734905833744	4.69733024836663	4.4579957254134	4.34623837760891	4.57917921861861	4.18237457601222	4.6359838855037	4.72687245899044	0.0279494070423775	0.941607365795845	0.978976230463359
Merged-chr10-7667476-4	chr10	7667370	7667570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145706)	promoter-TSS (NM_145706)	-34.0	NM_145706	69912.0	Mm.299887	NM_145706	ENSMUSG00000040034	Nup43	2610016K01Rik|2610529I12Rik|AA409950|p42	nucleoporin 43	protein-coding	6.39181914249362	6.50364920855013	5.84420899814058	6.48194124831932	6.41327670074922	6.76571463158201	6.69987108225208	6.37042804078026	0.332088780101989	0.188406209644268	0.486992724783917
Merged-chr6-141075462-4	chr6	141075355	141075555	+	861.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-173814.0	NM_018779	54611.0	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	4.5893810568671	4.28384513427808	4.59015398928461	4.0229070749277	4.11795849788354	4.30385463945735	4.10945722048044	4.3556037111715	-0.376749229894627	0.372643131703981	0.676386604956396
Merged-chr11-118156724-4	chr11	118156642	118156842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27523.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	6.65555524307218	6.56220183663913	6.96977714209789	6.39972986686652	6.38888720018046	6.39585914144291	6.46565886970917	6.51094876319584	-0.305647941451065	0.183663775164885	0.480761104819123
Merged-chr13-45693690-4	chr13	45693578	45693778	+	931.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 5 of 6)	intron (NM_001199304, intron 5 of 6)	186234.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	5.2451375958342	5.18385804209794	4.78359848043266	5.43271762985369	5.07789484871991	4.68738571443378	5.02835789031655	5.66758807791555	-0.0475901038238567	0.898569646117118	0.962247369777283
Merged-chr10-60697191-4	chr10	60697097	60697297	+	773.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045556)	promoter-TSS (NR_045556)	-707.0	NM_023370	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	3.83146790878742	3.92938609164326	3.55064201870262	3.74854577817175	3.92692307757569	3.89990465386899	3.95796194546384	3.8793733091996	0.411984897585503	0.353394799387029	0.660234872977488
Merged-chr4-3607810-3	chr4	3607710	3607910	+	935.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054089, intron 12 of 12)	intron (NM_054089, intron 12 of 12)	32931.0	NM_054089	116940.0	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	4.01663238775544	3.81031648845366	3.84407274346916	3.57179462889426	4.64047449442095	4.60540976195395	4.62678754835722	4.57880979523591	2.06737488568226	2.08127912846484e-07	8.36023516281033e-06
Merged-chr11-21223004-3	chr11	21222875	21223075	+	909.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16057.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	3.15198141225689	3.04993023523827	3.4739142280617	3.21949675804945	3.21142876842126	3.26340425787115	3.01526537190978	3.26703308418413	-0.141726706637676	0.800869735643987	0.923245260282665
Merged-chr8-119857968-4	chr8	119857861	119858061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4344.0	NM_146219	234796.0	Mm.86446	NM_146219	ENSMUSG00000031828	Klhl36	-	kelch-like 36	protein-coding	5.73862421576094	5.86637633630803	5.76550310993243	6.1841273233964	5.82068231572021	5.94212114216536	5.98918328107712	6.20914487247035	0.110283953187811	0.677625450202289	0.867764888703673
Merged-chr11-103033014-4	chr11	103032957	103033157	+	976.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008707, intron 1 of 11)	intron (NM_008707, intron 1 of 11)	4514.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	4.79077649520341	4.54367470689106	4.32720615342628	4.21364192455138	4.50402891213985	4.67352052230481	4.35359188262057	4.32455659633582	-0.00821053402425292	0.983402108572007	0.994001401392316
Merged-chr17-44053615-4	chr17	44053543	44053743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25159.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	7.36459958347827	7.39968057709996	7.86773672033687	7.67815011319369	7.4249948241453	7.42305836909462	7.80850294478737	7.71384538406853	0.00734192860144536	0.971255352429012	0.989664086043156
Merged-chr2-45622942-2	chr2	45622842	45623042	+	918.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73663.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	2.97920817253616	2.94309198628156	2.91398090203376	3.10022610244274	3.01356466957223	3.1515945399115	3.08998194243864	3.31343812496446	0.596665718731612	0.300751971271352	0.612615171792683
Merged-chr3-58520476-4	chr3	58520375	58520575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-5346.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	6.92646460837198	6.89409171659403	7.00414267848961	6.99481622145385	7.13828198861551	6.92138142986548	6.90565535277976	6.9615741199257	0.0486380802285427	0.798351763021288	0.921989164099235
Merged-chr3-137952418-4	chr3	137952303	137952503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	29146.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	8.14249078463895	8.19806415374473	8.31501809805598	8.0336077819496	7.45489431067963	7.90369113073906	7.47274314859013	7.50457214151042	-0.754039556732794	4.07875456024236e-05	0.000948143928293569
Merged-chr2-154902296-3	chr2	154902202	154902402	+	789.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9396.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	3.72274607737197	3.48261653183822	3.22330593361677	3.33190821746033	3.27733425618564	3.20597788181258	3.21184213494278	2.9521621869618	-1.02921643246436	0.0767576005016563	0.299458598770468
Merged-chr11-78247951-4	chr11	78247859	78248059	+	948.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359106, intron 1 of 3)	RLTR12E|LTR|ERVK	2208.0	NM_001359106	20316.0	Mm.20755	NM_009143	ENSMUSG00000002064	Sdf2	AI853825	stromal cell derived factor 2	protein-coding	5.23311472910735	5.19584804122267	4.58321320703408	4.53054457504793	5.49904373578113	5.03126266922733	5.20772026472124	5.61546559025054	0.833010042968071	0.0226248740937336	0.138924768212376
Merged-chr2-158409734-4	chr2	158409620	158409820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291138)	promoter-TSS (NM_001291138)	-133.0	NM_001291137	228850.0	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	7.33634243074872	7.5697815262508	7.21742980783281	7.08995169294952	7.4205692455621	7.78511287337199	7.56243727777731	7.50715515940846	0.349635630904634	0.0778465181819393	0.301692040149554
Merged-chr14-64440735-4	chr14	64440661	64440861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026322, exon 6 of 11)	exon (NM_026322, exon 6 of 11)	265.0	NM_001253715	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	6.65961354512568	6.73985463883504	6.99173943290513	6.56943879551001	6.31492821083817	6.60586737745795	6.61162679188746	6.70067630494566	-0.263101164634329	0.239069664693905	0.549583039862011
Merged-chr7-80426521-4	chr7	80426441	80426641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21105.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	7.83688336698959	7.52683205947414	7.30775777957829	7.6200926929595	7.61027553992172	7.63060361221379	7.45475656136528	7.88919474464064	0.0882764311484271	0.652424388192198	0.854646291240452
Merged-chr6-73470610-2	chr6	73470511	73470711	+	944.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025737)	promoter-TSS (NM_025737)	410.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	2.3633032436023	2.31061999381982	2.57997719622358	2.32376822578849	2.67437320434654	2.934252786427	2.63507273515383	2.70557142794977	1.84980857728069	0.00755041360586441	0.0644323038342981
Merged-chr16-58499838-4	chr16	58499756	58499956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	intron (NM_001357433, intron 2 of 10)	23570.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	6.08700046357837	6.21754148692382	5.99743948394813	6.27303228011022	6.50464875399211	6.30789036302579	6.55350502307705	6.40942249789081	0.43355167507645	0.053809379852055	0.242104794468358
Merged-chr9-62970514-4	chr9	62970411	62970611	+	979.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	10368.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	5.76299910793762	5.98440436629283	5.07489087041103	5.44633880664837	5.81965528720303	5.93749485757781	5.58828524824259	5.03148401453904	0.0504223302279468	0.88643120655652	0.957396277126786
Merged-chr4-99179670-4	chr4	99179564	99179764	+	908.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14270.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	4.00752056492938	4.21616768752206	4.22108469357736	3.97930983783762	4.93926306617777	4.87693108382396	4.42592854612689	4.31337163635177	1.32506081565193	0.000981488724763166	0.0132372328988634
Merged-chr17-5195569-4	chr17	5195481	5195681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	200507.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	6.71277857208297	6.93210820116041	6.53331081926313	6.55144034034498	6.32443227101773	6.27129108609172	6.54731443670468	6.11038738785167	-0.534857122711388	0.0207103364932554	0.131087068825108
Merged-chr5-93206836-4	chr5	93206731	93206931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017367)	promoter-TSS (NM_017367)	313.0	NM_029363	75610.0	Mm.175502	NM_029363	ENSMUSG00000029384	2010109A12Rik	-	RIKEN cDNA 2010109A12 gene	protein-coding	6.03046874884306	5.98292182014874	5.69053484570897	5.50480476527734	6.11343235616575	6.43891659024892	6.30128104615118	6.1296736523526	0.696851041676259	0.0076052020550922	0.0647912240669549
Merged-chr13-5864542-7	chr13	5864436	5864636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011803, intron 1 of 3)	intron (NM_011803, intron 1 of 3)	3047.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	6.38229759894318	6.31414976217429	5.58149582549757	6.03104281657024	6.36642057322103	6.78917011435804	6.002270783285	6.17670181537771	0.383127799290991	0.192559851451629	0.492232633021207
Merged-chr8-34965113-2	chr8	34964987	34965187	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175091, exon 1 of 27)	exon (NM_175091, exon 1 of 27)	603.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	3.74474889469387	3.80192921456572	4.04917656779653	4.05377295018599	3.946081582238	4.02736842575841	3.89003498469756	4.09091903838305	0.161905240274124	0.710372220187325	0.884071480587363
Merged-chr17-57292435-4	chr17	57292331	57292531	+	865.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	B4A|SINE|B4	13331.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	3.86112486525154	3.75867016680665	4.09325822451113	3.72925406266336	4.16883503496788	3.93035234105342	3.89488444927445	3.63907253582361	0.201677175481794	0.663085668257849	0.860384285982478
Merged-chr10-94355585-4	chr10	94355475	94355675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	43626.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.69077169075829	5.90761048382083	5.52366297836584	5.780615540407	5.72100072805242	5.78765472554475	6.18801229103759	5.96882989348203	0.298010931637305	0.262638001665985	0.574445092878026
Merged-chr2-130525243-3	chr2	130525150	130525350	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 7 of 21)	intron (NM_001355161, intron 7 of 21)	38499.0	NR_040348	321014.0	Mm.442588	NR_040348	ENSMUSG00000060029	4930473A02Rik	-	RIKEN cDNA 4930473A02 gene	ncRNA	5.04738634715094	4.69658308088409	5.32802401852039	4.86252762941525	4.80131086426466	4.64291216962846	4.74588060172515	4.8410089837344	-0.468450496923754	0.180003715213804	0.476341490880287
Merged-chr15-73350513-4	chr15	73350410	73350610	+	862.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358046, intron 2 of 34)	intron (NM_001358046, intron 2 of 34)	72681.0	NM_007982	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	4.37331614338477	4.94883823595864	4.51049314614863	4.92197777557252	4.50375886530747	4.55179339001159	4.35510407003609	4.84664105721666	-0.328858847417432	0.398972797068819	0.697032171286669
Merged-chr7-16614688-2	chr7	16614581	16614781	+	1000.0	f0_balb.idr|f0_c57.idr	5' UTR (NM_172739, exon 1 of 7)	5' UTR (NM_172739, exon 1 of 7)	312.0	NM_172739	232906.0	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	5.27297509000485	5.2794938352519	5.39783577674055	5.35662193345123	5.54916300273501	5.76192021440956	5.50961060015983	5.55976578123613	0.460763268861627	0.0885859877025412	0.324772702481544
Merged-chr13-60876707-4	chr13	60876591	60876791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	-12275.0	NM_178098	214639.0	Mm.19839	NM_178098	ENSMUSG00000050345	4930486L24Rik	AW545031	RIKEN cDNA 4930486L24 gene	protein-coding	5.98604891933095	5.853172923745	5.90055761913063	5.90882437996058	5.84741712457897	5.85677085357975	5.8018072952015	5.70317308976858	-0.171453592433828	0.479592292300933	0.755307986850343
Merged-chr1-131184527-4	chr1	131184416	131184616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018750, intron 2 of 5)	intron (NM_018750, intron 2 of 5)	15669.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	6.33302013316559	6.2484426031034	6.1237484321373	6.30141880344744	6.12938507342515	6.36019486079502	5.98455005907024	6.23838393780607	-0.117543996442346	0.608773530713503	0.83078287866141
Merged-chr1-155051203-5	chr1	155051034	155051234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32130.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	5.00932178326515	4.96437457827665	4.93932115524309	5.07531525283451	5.16206482885157	5.07719235518306	5.01980094870216	5.16819607143628	0.202994291969143	0.501889298173123	0.769448365511349
Merged-chr10-13299361-4	chr10	13299261	13299461	+	962.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	24928.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	4.42106630687711	4.71833398389449	4.46467948349248	4.33423319353391	4.70901574376366	4.82973101545703	3.94129379119059	4.3746325042609	0.0486508633850515	0.909322669425233	0.966300488035004
Merged-chr4-44704548-3	chr4	44704450	44704650	+	892.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073462, exon 1 of 1)	non-coding (NR_073462, exon 1 of 1)	1750.0	NR_073462	70602.0	Mm.491142	NR_073462	ENSMUSG00000103995	5730488B01Rik	-	RIKEN cDNA 5730488B01 gene	ncRNA	3.24110489306662	3.47682115329285	3.24151856649492	3.51375553585853	3.11089884199791	3.09589466899157	3.22955590872013	3.05487730346279	-0.997206343903779	0.0761626178792392	0.298096281646671
Merged-chr4-88706062-4	chr4	88705954	88706154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14786.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	6.34508408968183	5.81485196307585	6.23752124586375	6.71277293733472	6.00612570134654	5.94138179090508	6.3477938510791	6.1946294780235	-0.311258417242153	0.272704676937884	0.584138684652025
Merged-chr10-42299613-3	chr10	42299511	42299711	+	703.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD|LINE|L1	-22869.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	3.65835539679498	3.47255828298515	3.55212358392095	3.70095645678007	3.37416107321217	3.42260982116638	3.53826848941196	4.01089811444768	0.0217526491657665	0.966614836904774	0.988217650432256
Merged-chr13-54215989-3	chr13	54215883	54216083	+	997.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153432, intron 2 of 3)	intron (NR_153432, intron 2 of 3)	23850.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	4.06302545484433	3.9490221198188	4.06367692471803	2.68375724209688	6.56234177002233	6.12300845912858	6.5407425643572	6.59533669924485	6.64292203179552	1.1666028053481e-36	2.5949256588085e-33
Merged-chr17-12783423-4	chr17	12783313	12783513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027784, intron 2 of 2)	intron (NR_027784, intron 2 of 2)	-13707.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	6.72099024526511	7.14437522874663	6.91197676654021	6.93514969923328	7.09456236037306	7.15486640698685	7.25802353177746	7.19614923758649	0.322089623054449	0.097348160656581	0.341892965282221
Merged-chr3-15575126-3	chr3	15575029	15575229	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001173460)	promoter-TSS (NM_001173460)	-64.0	NM_001173460	668101.0	Mm.423523	NM_001173460	ENSMUSG00000095028	Sirpb1b	-	signal-regulatory protein beta 1B	protein-coding	3.58769685221833	3.44884989480293	3.58820084625658	2.45268312345133	5.88744566444395	5.52607346791137	5.79565831991003	5.71456779192633	9.47273630227906	1.51414465203015e-24	8.90704976750861e-22
Merged-chr10-116950426-4	chr10	116950275	116950475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038025)	promoter-TSS (NR_038025)	78.0	NM_001359645	216363.0	Mm.336394	NM_001003950	ENSMUSG00000064181	Rab3ip	B230311A06|Gtpat12|Rabin3	RAB3A interacting protein	protein-coding	7.17242872827227	7.25178880376826	7.18511850697486	7.63522189657429	7.35952128039705	7.23054114623359	7.21545532180617	7.13368102194928	-0.136538573718841	0.501542061549719	0.7692646023024
Merged-chr13-20798110-4	chr13	20798015	20798215	+	975.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012054, intron 1 of 20)	intron (NM_012054, intron 1 of 20)	4002.0	NM_012054	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	4.65478763017146	4.64055232207228	4.85472476599909	4.59667183831008	5.23803358896788	4.99208495465854	5.12405422836801	5.02365666898546	0.85155408596188	0.00753644301867091	0.0643440659261097
Merged-chr12-116028332-2	chr12	116028211	116028411	+	661.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-19413.0	NM_001004066	56220.0	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	3.77870580288333	3.70225121610762	3.47154379729676	3.95400101245126	3.28350961481071	3.5871045739491	3.40015932669723	3.28383109072404	-1.20331717899337	0.0222881138656633	0.137664496428675
Merged-chr2-113431059-4	chr2	113430979	113431179	+	945.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010230, intron 3 of 19)	intron (NM_010230, intron 3 of 19)	-9985.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	4.57509975110653	4.53130095064148	4.3398965549809	4.73712421620015	5.00292040092329	4.83427323241882	5.1565844606964	4.77249365618562	0.788939615875551	0.0256275869187155	0.151017965832209
Merged-chr5-100635138-6	chr5	100635014	100635214	+	880.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39142.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	5.49143922999516	5.13351060611862	5.54429173817382	5.2185598739787	5.43350519422144	5.33797017529953	5.16972410666901	5.56550444571075	0.0746855381941239	0.801708087846276	0.923502404690673
Merged-chr2-18773253-3	chr2	18773162	18773362	+	885.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12400.0	NR_126079	100041479.0	Mm.393659	NR_126079	ENSMUSG00000092353	Gm3363	-	predicted gene 3363	ncRNA	3.51674094902999	3.23759219330106	3.46288181262666	3.50654728796142	3.45044297166707	3.57817510721157	3.27376177952975	3.71164023872051	0.242799043202632	0.638092351453668	0.847040716325261
Merged-chr2-129585795-4	chr2	129585699	129585899	+	963.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7040.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	5.27193120488676	5.32964481922248	5.70635857502887	5.162990334501	4.98943499974075	5.3532968470799	5.27650969272696	4.96097896530081	-0.409847664336618	0.199552000778951	0.501474545095065
Merged-chr13-97240518-4	chr13	97240441	97240641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007930)	promoter-TSS (NM_007930)	-564.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	4.69460232341412	4.89285011107691	5.18594701464034	5.12504356757675	4.88074898295091	4.95398197943268	4.94025924365878	5.02819565933307	-0.0987629913614261	0.762706155574974	0.907011913026374
Merged-chr13-6002659-4	chr13	6002576	6002776	+	873.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	X3_LINE|LINE|RTE-BovB	141187.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	3.63751198995048	3.28913829499814	3.89921499898145	3.97813456685422	3.79994020604982	3.75656016905481	4.05639046587116	3.94318793399558	0.442725340583948	0.38813069011997	0.688847007122855
Merged-chr13-112635397-2	chr13	112635297	112635497	+	680.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145885, intron 5 of 21)	intron (NM_001145885, intron 5 of 21)	16913.0	NM_010029	13206.0	Mm.12818	NM_010029	ENSMUSG00000021758	Ddx4	AV206478|Mvh|VASA	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4	protein-coding	3.6780399498602	3.96278754768985	3.79596018621295	3.49502032152012	4.13243154371992	4.12951531758393	4.55042137090839	3.84883969946306	1.23510059399849	0.00797683989413839	0.0670663225637699
Merged-chr14-55696781-4	chr14	55696706	55696906	+	987.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-14989.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	4.64851395928726	4.98691312756303	5.13679061909182	5.26720487319969	5.11404672477077	4.91568112388357	5.08021623041421	5.19405051515454	0.0662865732938158	0.8421433789705	0.940110307562683
Merged-chr7-17056221-4	chr7	17056123	17056323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016868, intron 2 of 14)	CpG	456.0	NM_016868	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	7.01893015926983	6.60998117058577	6.77719009993865	6.53911187864949	6.80186295766555	6.61732775748379	7.10587741477341	6.45288846919143	0.0443833826324766	0.852723690146607	0.944638235507649
Merged-chr3-56575595-2	chr3	56575492	56575692	+	839.166626	f0_balb.idr|f1_balb.idr	Intergenic	GSAT_MM|Satellite|Satellite	-391891.0	NM_030595	26422.0	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	4.06592713537103	3.6906529349324	3.80475391292203	4.38916831136772	3.1723304981967	3.31877819251805	3.19292974912201	3.59275934951091	-2.36382646929564	5.33381405461848e-05	0.0011976515791599
Merged-chr9-21989449-4	chr9	21989345	21989545	+	971.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023622)	promoter-TSS (NM_023622)	8.0	NM_023622	71746.0	Mm.110594	NM_023622	ENSMUSG00000040146	Rgl3	1300003D20Rik|mFLJ00153	ral guanine nucleotide dissociation stimulator-like 3	protein-coding	5.20346218085564	4.88163121525815	5.08482408058693	4.86954353434509	4.67461163846336	4.68136550216701	4.92874127600845	5.20071536984025	-0.243101849219789	0.479062834236824	0.754876095045917
Merged-chr15-83432866-1	chr15	83432766	83432966	+	724.333313	f0_balb.idr	promoter-TSS (NM_011862)	promoter-TSS (NM_011862)	-16.0	NM_001159510	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	3.67975173537816	3.74571918983467	3.57478964393898	3.77616057776233	3.55323143997713	3.74545294426705	3.38717067293317	3.51680395290635	-0.468066502007771	0.335395087564427	0.645812014763522
Merged-chr12-51718807-4	chr12	51718704	51718904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 2 of 5)	intron (NM_001329698, intron 2 of 5)	-26890.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	6.6109307526461	6.48513436714523	6.76769809778127	6.97619648392597	6.11247758577453	6.0319885847654	6.08956158218715	6.54564958177058	-0.771867741821368	0.00170954495749647	0.0206804385672402
Merged-chr15-73078791-8	chr15	73078695	73078895	+	910.2728880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11617.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	3.29933209097133	3.40260900751021	3.73518417687122	3.28245552579788	3.30680582956452	3.70712408619272	3.46673984759862	3.73281170949936	0.41138373378874	0.435827042137314	0.724862103693129
Merged-chr8-34154793-8	chr8	34154701	34154901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026432, exon 1 of 6)	exon (NM_026432, exon 1 of 6)	238.0	NM_026432	67887.0	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	5.88094708308809	6.07878992161265	6.33143236958113	5.92101359327628	6.10523594305107	6.36064288815768	6.01218238884289	6.20060535772959	0.179565564580072	0.46588061955291	0.746235855024184
Merged-chr9-57473484-4	chr9	57473393	57473593	+	905.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5433.0	NM_001301635	56807.0	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding	3.09523195897128	3.4441712750079	3.5481067706153	3.2147802077407	3.07472469794922	3.27355222928631	3.271840568757	3.49740674271418	-0.179441770271698	0.749284042023074	0.901235090931483
Merged-chr11-29705409-4	chr11	29705316	29705516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194051, intron 1 of 8)	intron (NM_194051, intron 1 of 8)	11642.0	NM_194051	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	6.68475394443127	6.74250260420707	6.99343375794471	7.14583521636652	6.66823283420833	6.96399773389966	6.40240097522178	6.23136106935187	-0.451668886987924	0.0676154002591477	0.277554589102992
Merged-chr1-120093719-4	chr1	120093621	120093821	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19941.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	4.9513409896804	4.73175023197298	4.65504137038115	4.96843633700181	5.32252951321144	5.45936144874161	5.44805187753294	5.72221506176289	1.19020997945982	0.000153099351969807	0.00289980276047336
Merged-chr19-3575933-4	chr19	3575842	3576042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028999)	promoter-TSS (NM_028999)	-193.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	8.30567413976914	8.50376671082545	8.36577927783919	7.9256797301362	8.19486757264198	8.30882157361523	8.22359270079234	7.76300696782797	-0.187922920934355	0.350238274844743	0.657825425895823
Merged-chr13-41515918-4	chr13	41515844	41516044	+	907.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28584.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	4.49585413215502	4.30494336936157	4.12129747393985	4.52719802732221	4.66566099647063	4.81883121645188	4.15724577031049	4.57251673159796	0.438259670718532	0.274758284870276	0.586505321900776
Merged-chr10-118049520-3	chr10	118049423	118049623	+	882.7333369999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92264.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	3.68278360271516	3.50012321186171	3.35533051585521	3.93980254005227	3.99087517208681	3.91747395733756	4.14649153825038	4.38330427577915	1.28198398048664	0.0135232550728459	0.0976395905293632
Merged-chr2-38944193-3	chr2	38944093	38944293	+	739.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172854, intron 2 of 7)	RLTR17|LTR|ERVK	12213.0	NM_172854	241327.0	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	3.6840102968773	3.19694049011848	3.73034705693813	3.25668520857683	3.10786952511703	3.70736265098979	3.35618773015372	3.30652691437947	-0.337130999129583	0.559156140402464	0.803643367386073
Merged-chr12-35406270-4	chr12	35406174	35406374	+	941.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	128715.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	4.56955168456043	4.93303960051581	5.14171022100592	5.60814905061822	4.53281675820467	4.79910164678486	5.28683682006862	5.04244151867472	-0.367617334716765	0.368650911336384	0.673101867894841
Merged-chr4-134914990-4	chr4	134914887	134915087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027935)	promoter-TSS (NM_027935)	-71.0	NM_027935	71817.0	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	5.59024733580739	5.69187854652001	5.79765829039098	5.47784209686411	5.90112393483985	5.82217682630303	5.90263011131306	6.01137216309696	0.460841939816526	0.0684272000200691	0.279372471620311
Merged-chr11-72570772-4	chr11	72570659	72570859	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20513.0	NM_029932	77577.0	Mm.46185	NM_029932	ENSMUSG00000020798	Spns3	9830002I17Rik	spinster homolog 3	protein-coding	4.46246121129711	4.15930887075571	3.85064505261612	4.09418690728105	4.16804361792694	4.34323026940453	3.94963184476489	4.63429680509576	0.342156685261783	0.439705268519428	0.727425871224001
Merged-chr14-13356186-4	chr14	13356084	13356284	+	975.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028052, intron 2 of 5)	intron (NM_028052, intron 2 of 5)	71404.0	NM_028052	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	5.55134112461025	5.44853497730511	5.30052070833578	5.4304323877901	5.55200310264379	5.12725876409703	5.33437412654563	5.29687060353986	-0.151199139447825	0.600149702892074	0.826731739315186
Merged-chr1-80614857-4	chr1	80614758	80614958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 4 of 55)	intron (NM_175291, intron 4 of 55)	50494.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	5.89915820575528	5.92767617805673	5.78649678604287	5.61151500032106	5.7181351967384	5.72857975646301	5.84827637707951	5.45909887037628	-0.169857133756093	0.522377502436133	0.781971587334536
Merged-chr6-115523178-3	chr6	115523076	115523276	+	958.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21528.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	4.33522607559697	3.78145741520871	4.41090995942623	4.50845917272579	3.82212373980819	3.99829324560579	3.86000277159416	3.81688794850977	-1.12262181772043	0.0151363555268924	0.10553341659797
Merged-chr9-20643312-4	chr9	20643235	20643435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013911)	promoter-TSS (NM_013911)	-1.0	NM_025401	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	6.96906807732486	7.12585046492084	6.48746420722767	6.70188860790775	7.01118626679993	6.71994094682648	7.35478877523349	6.79095920528888	0.214822367318787	0.378484194225698	0.68108017850565
Merged-chr12-108637874-6	chr12	108637737	108637937	+	895.544434	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	2084.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	3.18972300983768	3.58957635064015	3.19009525073046	3.12333645260285	3.17282709744041	3.42778026403047	3.46394382681715	3.57587747714554	0.458862338103706	0.405906798588388	0.702456276834042
Merged-chr9-50591027-4	chr9	50590921	50591121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12828.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	7.83749074393545	7.69294606946336	7.51202284175603	7.82589081910494	7.52910535890712	7.65127571439157	7.39868983672659	7.4690100409577	-0.283296277136572	0.110960442319486	0.368049955044906
Merged-chr18-62173473-3	chr18	62173404	62173604	+	905.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6477.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	3.49214472530138	4.02389481502639	3.49259758924682	3.48041975983288	3.58695553364389	3.77499540312619	3.3594061030305	3.49076599144403	-0.259046282963614	0.622393445880502	0.838356096591867
Merged-chr19-37778110-3	chr19	37778017	37778217	+	874.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80309.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	3.46047948329644	3.73468600948741	4.09939705731728	3.97967268892487	3.10938608370572	3.31617833624557	3.32571314443542	3.33561857505252	-2.02156899212861	0.000352759710525852	0.00578550309574185
Merged-chr13-9638206-4	chr13	9638085	9638285	+	939.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 31 of 36)	(CA)n|Simple_repeat|Simple_repeat	125625.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	4.89036243191317	4.53639516842907	4.8911725996421	5.02952193151205	4.8649748012984	5.16541219996597	4.75677854134167	4.99071699739964	0.176028445663906	0.607629785917009	0.830095782043007
Merged-chr17-75551967-4	chr17	75551872	75552072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133747)	promoter-TSS (NM_133747)	-26.0	NM_001357860	72722.0	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding	8.79500642548511	9.01292503908273	8.99399203019973	8.71607520262566	9.06251204098436	9.12921106206538	8.9398738288094	8.77842429493169	0.127430437009018	0.427888334033009	0.719012812581401
Merged-chr14-62354579-4	chr14	62354482	62354682	+	953.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026001, intron 5 of 10)	L1M2|LINE|L1	22514.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	4.27860460707031	4.10262388442168	4.44230485598372	4.19142404001177	4.47319008624238	3.99660660396749	4.02456891790756	4.40061618409464	-0.0027841505175284	0.994689594606663	0.99809702625617
Merged-chr13-12475480-4	chr13	12475319	12475519	+	859.535706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133643, exon 6 of 6)	3' UTR (NM_133643, exon 6 of 6)	-13681.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	3.09389530953013	3.23593537018746	3.46437111701915	3.23229209194259	3.5125656552518	3.52505912168224	3.33945250268617	3.74927126066238	0.955398439124091	0.0684379659800369	0.279374984093172
Merged-chr4-33347269-4	chr4	33347177	33347377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305273, intron 8 of 15)	intron (NM_001305273, intron 8 of 15)	36966.0	NM_001305273	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	6.26850559871209	6.33782005628176	6.28819861595253	6.87721402905097	5.84648906439557	5.86800211252848	6.18029120961298	6.227142532151	-0.68414119196139	0.0109152603889436	0.0840105703656098
Merged-chr15-94597936-2	chr15	94597836	94598036	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8112.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	2.93067276926668	2.9595293988777	3.05881722152216	3.12065076260448	3.06186836277642	3.16848075225516	3.04800973467871	3.32988470042178	0.506688383895317	0.375003981929979	0.678074645746069
Merged-chr5-120812621-4	chr5	120812534	120812734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003507)	promoter-TSS (NR_003507)	-1.0	NR_003507	23961.0	Mm.233471	NM_001083925	ENSMUSG00000029605	Oas1b	Flv|L1|Mmu-L1|Oas1|Oias-2|Oias2|Wnv	2'-5' oligoadenylate synthetase 1B	protein-coding	6.27566858982809	6.25864637714012	5.37284516626716	6.08905230625858	6.15327494808612	5.94484614699665	5.88480787199671	6.10449200001539	-0.0317119555477002	0.912420799925542	0.967207481621882
Merged-chr18-76933503-4	chr18	76933391	76933591	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025409, intron 1 of 2)	LTR10_RN|LTR|ERVK	3464.0	NM_025409	66191.0	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	5.03151434465669	5.2992566956878	5.20237075183667	5.55099848445116	5.15369713978132	5.13535577054023	5.40703777431312	5.13355652972355	-0.173698444177131	0.577553736282338	0.814166268489505
Merged-chr2-45279640-4	chr2	45279568	45279768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-162226.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.92691100247754	7.9904231255533	7.86478784964362	7.55096350070438	7.76425055627757	7.99050057378033	7.28440170000995	7.6124786629531	-0.195641594747409	0.352638657143023	0.659679630621423
Merged-chr18-8376833-4	chr18	8376713	8376913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	507100.0	NM_001360956	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	5.99449478771972	5.60302975199905	5.85582693205311	6.48403077895437	5.94322340253339	6.27621488859071	6.22168582503927	5.96904324682653	0.0901461371549111	0.759754297679876	0.905823204880252
Merged-chr12-26469291-4	chr12	26469212	26469412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020557)	promoter-TSS (NM_020557)	97.0	NM_020557	22169.0	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	7.23409169836021	6.82659508571018	6.81938557353255	7.16779634629837	7.18197032729844	7.23315948535361	7.04474237386631	6.67683688193185	0.0320564151843628	0.885632961261656	0.957045685546015
Merged-chr1-92957210-3	chr1	92957098	92957298	+	933.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-6608.0	NR_015525	100037260.0	Mm.442236	NR_015525	ENSMUSG00000100632	9430060I03Rik	-	RIKEN cDNA 9430060I03 gene	ncRNA	3.39753616053133	3.69300408813221	3.39796136417754	3.10159555927419	3.89271272042786	3.68945680637887	3.38565729594523	3.76822641853851	0.945238096667628	0.0769672623996165	0.299942664677925
Merged-chr15-82147141-4	chr15	82147053	82147253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033218)	promoter-TSS (NM_033218)	-116.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	8.21493632498229	8.55687043616563	8.28691848610467	8.12612251303968	8.46519471932463	8.67506847390261	8.44324815753825	8.33743702952687	0.229524646330886	0.185193003300556	0.483028683837681
Merged-chr2-58130238-3	chr2	58130141	58130341	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_139200, exon 8 of 8)	3' UTR (NM_139200, exon 8 of 8)	29881.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	3.88098033573004	4.00359256852733	4.34441214043412	4.84401390281478	3.85664931179725	3.54498041722147	3.97143123327229	4.17601654443921	-1.10948314331012	0.0345840446475732	0.184049174876233
Merged-chr4-122859257-4	chr4	122859162	122859362	+	834.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008917)	TTS (NM_008917)	23035.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	3.77859747040433	3.44112503989929	3.92293248650931	3.84856115581283	3.94690761686196	3.84618451629719	3.54570284158916	3.7769548945073	0.0864656939711713	0.858108546059327	0.946507493877689
Merged-chr6-31253371-4	chr6	31253276	31253476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040257, intron 2 of 7)	intron (NR_040257, intron 2 of 7)	33025.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	5.52811859743494	5.99437023961308	5.25753833084103	4.92798202968722	5.857789494866	5.67691231070101	5.41742090536185	5.35083832075953	0.195946957156437	0.579003474879661	0.815192822582076
Merged-chr16-94290291-4	chr16	94290198	94290398	+	961.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360045)	promoter-TSS (NM_001360045)	-7.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	4.94704173032014	5.09315098580839	5.1146679071204	4.75675862907076	5.24903980022137	4.84989255217313	5.14995782743029	4.83301595160568	0.140495271092337	0.672493024104434	0.865234729908528
Merged-chr4-32011360-3	chr4	32011270	32011470	+	972.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009316, intron 14 of 16)	L1MA5A|LINE|L1	47263.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	4.04800728844091	3.70438894789598	4.44974254489522	4.43966340157388	3.85329113593643	3.72293219042073	3.98342336532005	3.94823748719757	-0.862245558138307	0.0716401662005007	0.287473525301382
Merged-chr1-89070219-4	chr1	89070109	89070309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133816)	promoter-TSS (NM_133816)	-206.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	8.77599968003461	9.04241971860017	8.47323224733291	8.64610740315702	8.97706432036088	9.19997961170729	9.11392496305411	8.7759730620161	0.340877856611862	0.0606513121351699	0.260175962542594
Merged-chr18-56709876-4	chr18	56709706	56709906	+	977.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010721, intron 1 of 10)	B3|SINE|B2	1993.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	4.59140758641583	4.45506958897775	4.22179861784795	4.51400729228523	4.32501726527065	4.19398741661976	4.46028257364863	4.17096675965061	-0.385923793393661	0.318761546075314	0.630638948471144
Merged-chr9-107575090-3	chr9	107574989	107575189	+	962.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1838.0	NM_008317	15586.0	Mm.475658	NM_008317	ENSMUSG00000010051	Hyal1	Hya1|Hyal-1	hyaluronoglucosaminidase 1	protein-coding	3.47183216571157	3.48241460052183	3.47226194395184	3.13800879506871	4.33516583216163	5.06061137750131	4.36149300002418	4.52811969344454	3.40670230305856	2.31656024894229e-12	2.32896104462519e-10
Merged-chr13-69611625-4	chr13	69611526	69611726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145354)	promoter-TSS (NM_145354)	-163.0	NM_175283	78925.0	Mm.451912	NM_175283	ENSMUSG00000021594	Srd5a1	0610031P22Rik|4930435F02Rik|S5AR 1|Srd5a-1	steroid 5 alpha-reductase 1	protein-coding	9.6567391157788	9.69547421217215	9.54192739469797	9.57943309323587	9.57053943901548	9.76891815517182	9.72984114950311	9.43804792449216	0.0159845210904805	0.911743247767671	0.967021434294281
Merged-chr15-100227776-4	chr15	100227684	100227884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007497)	promoter-TSS (NM_007497)	-75.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	6.38607941072907	6.89520326443509	6.13869580462879	6.21934528085093	7.11089095363579	6.75594651174505	6.75264477174647	6.84911145482216	0.628010545210857	0.0127362229780768	0.0937779678655762
Merged-chr13-110599785-4	chr13	110599691	110599891	+	975.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	204747.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	5.15887450058175	4.98070279026625	4.80067401122925	4.94405208183473	5.07208547716205	5.26920018449958	4.96863702604739	5.50812951428285	0.457598746167426	0.153646215486406	0.438442775840401
Merged-chr7-19118400-3	chr7	19118310	19118510	+	971.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1449.0	NM_175530	243867.0	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	4.54040880392996	3.6877903148611	4.06775178635927	3.63170787814847	4.83560427524998	4.99658075264669	4.47893300639962	4.88414467673075	1.83159014389333	5.92300949597874e-05	0.00130726788500549
Merged-chr10-79852383-4	chr10	79852286	79852486	+	968.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_029447, exon 1 of 1)	non-coding (NR_029447, exon 1 of 1)	-2046.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	5.26161728725965	4.74720013936417	5.52499638173196	5.19527688797301	5.14500418265219	5.10800449228234	4.56635825650104	5.34344936395928	-0.252885969952442	0.489122502317014	0.761605026850628
Merged-chr8-61558449-3	chr8	61558347	61558547	+	874.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	32722.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	4.10640563512726	3.85720233912198	3.96402510066063	4.15851937297648	3.94766307055333	3.86480139385777	4.2159984947065	4.19147636203167	0.0702399176947079	0.870346826740002	0.951342292562219
Merged-chr19-37535232-4	chr19	37535143	37535343	+	964.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15175.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	5.37961397045844	5.28755722864768	5.45662313004329	5.34581323439439	4.79391864982407	4.79732932769675	4.84874883627411	4.65763003678922	-1.1452586676836	0.000243224643127037	0.00426731251494684
Merged-chr17-35235100-4	chr17	35235006	35235206	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347351)	promoter-TSS (NM_001347351)	96.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	4.8881465815732	4.91690256129463	4.85173712351784	4.85002868412642	5.07389691727219	5.06287414208478	4.79088104294288	5.2073675485703	0.331698097874044	0.293985535063627	0.606364889537559
Merged-chr19-37370614-4	chr19	37370516	37370716	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-5787.0	NM_010615	16551.0	Mm.42203	NM_010615	ENSMUSG00000012443	Kif11	Eg5|Kif8|Kifl1|Knsl1	kinesin family member 11	protein-coding	4.93544411960901	5.16381657978386	5.00751043962678	4.93496419014158	5.50780572631091	4.91764914153364	4.83799489335762	5.07152923389454	0.22680465231241	0.503573921950739	0.770488342695377
Merged-chr13-60698193-3	chr13	60698092	60698292	+	917.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	L1M5|LINE|L1	88172.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	3.61426345543654	3.38270942697721	3.25018272103068	3.4991300161043	3.5441713163371	3.09223296896383	3.17795593905491	3.12236991346559	-0.658974306167511	0.253192172069559	0.564496269375165
Merged-chr19-56734170-4	chr19	56734047	56734247	+	978.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11775.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	5.38414067472003	5.41078540354257	5.2384638487347	5.46524787485522	5.02371297059441	4.97949092626645	5.38525827145412	5.10414065764166	-0.468357842367211	0.117590024156395	0.379286775405276
Merged-chr3-65929984-4	chr3	65929880	65930080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28269.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	6.68232384936463	7.28006076439322	7.12091940037555	6.74342678074236	6.90604862652845	7.30824940815863	7.01627595978069	6.33546220545535	-0.0591262120943969	0.824019329190824	0.932476232435989
Merged-chr15-50816721-3	chr15	50816618	50816818	+	653.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	72331.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	3.51092547597556	3.70214139815338	3.77257104534482	3.49629103046911	3.51703671550684	3.43930172026021	3.60771645982387	3.86117986991226	-0.0152557265332027	0.97532330862839	0.991254912327553
Merged-chr17-46890582-4	chr17	46890456	46890656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178385)	promoter-TSS (NM_178385)	-65.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	7.86438981869594	8.30437897814485	7.81937238158986	7.88465561094801	8.05975382506381	8.28392897864336	7.97721486497614	8.07567125582116	0.151702748507871	0.412475318006078	0.707583519920819
Merged-chr6-116198108-4	chr6	116198000	116198200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4726.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	7.40858279754321	7.86116421933048	7.49722207100438	7.21408035997422	7.60570465022438	7.70231647813894	7.75074240917173	7.41472825481624	0.148578109340908	0.474107480284289	0.751607118426792
Merged-chr6-57535647-4	chr6	57535550	57535750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175523)	promoter-TSS (NM_175523)	-224.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	9.63168288532187	9.63490108797285	9.9869880167444	9.90164271019718	9.70143171979297	9.84370271656459	9.74906443648672	9.64377743358946	-0.0780671945160369	0.605558428974277	0.828933020461805
Merged-chr4-147938341-4	chr4	147938259	147938459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1583.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	5.60027842186124	5.3650908437689	5.87293467573008	6.3984504512875	5.60238684500146	5.53982970230709	5.57299309992857	5.91236172334435	-0.36841558763621	0.264771683339179	0.576600386978718
Merged-chr9-114887858-3	chr9	114887744	114887944	+	627.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-43692.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	3.15029011798564	3.04291185686002	3.26174957487322	3.29772572938674	2.91807960039322	3.00246699937153	3.08044850084187	3.25988925146538	-0.516262358529849	0.372325115147255	0.676146132440278
Merged-chr11-76474661-4	chr11	76474552	76474752	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 3 of 21)	PB1|SINE|Alu	-6187.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	4.40937779619276	4.14759302714825	4.23048714551162	4.67993341370195	4.35530002819772	4.53916991155548	4.47032592621352	4.22796810125016	-0.00491363610077527	0.99030301409756	0.996152503306016
Merged-chr2-180104584-4	chr2	180104477	180104677	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133849)	promoter-TSS (NM_133849)	-170.0	NM_133849	99296.0	Mm.285360	NM_133849	ENSMUSG00000039059	Hrh3	AW049250|H3R|HH3R	histamine receptor H3	protein-coding	5.42388052969159	5.29285913898314	5.11999593492588	5.47135196749453	5.06938773026086	5.19008450862511	5.54916931654599	5.08166444529589	-0.201093037380569	0.514330603538193	0.776966017760127
Merged-chr6-71149727-3	chr6	71149600	71149800	+	887.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5320.0	NM_178413	232078.0	Mm.37547	NM_178413	ENSMUSG00000054474	Thnsl2	BC051244|TSH2	threonine synthase-like 2 (bacterial)	protein-coding	3.66879470263308	3.60917565342563	3.56733339895806	3.34056074144976	3.55329713173134	3.38336404849513	3.60433575022088	3.56532768110968	-0.0315418409025481	0.949587800597431	0.981966382768546
Merged-chr16-23272989-4	chr16	23272831	23273031	+	965.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-17539.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	4.891054204418	4.85547609424374	4.393266669135	4.55313913045067	4.03244824229578	4.37490904248704	4.66314348220688	4.88848879904415	-0.355298460735096	0.39924694306014	0.697288631090116
Merged-chr19-18630628-4	chr19	18630520	18630720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	1193.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	5.61186117506055	5.32577589067789	5.86947158726331	6.01021129843636	5.33288396047749	5.40161832755278	5.6098959861566	5.41351465701532	-0.517787528951919	0.0832691250264015	0.313613635080407
Merged-chr11-93980022-4	chr11	93979923	93980123	+	961.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11502.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	5.28602224522728	4.68607363863768	4.51041435896226	4.47859940016022	4.96597678652056	4.7777674661131	5.01187850625198	4.59713870739471	0.162638380084169	0.675857184731357	0.866938407063941
Merged-chr16-31294000-4	chr16	31293885	31294085	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18708.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	5.16406433297513	4.95873345898975	4.92566993754145	5.46595966688041	5.01143910558498	4.90274619485613	5.17004998590512	5.19212881271574	-0.180776195387501	0.585429289577605	0.818171082500724
Merged-chr14-49066506-4	chr14	49066401	49066601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144535)	promoter-TSS (NM_144535)	-48.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	7.42921239245305	7.69113674005559	7.45004068809845	7.73711776560152	7.41474365352926	7.6654029987359	7.55941323682108	7.5203049381882	-0.074746234690409	0.680827361305309	0.868956507598538
Merged-chr8-109706996-4	chr8	109706830	109707030	+	761.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286393, intron 2 of 7)	intron (NM_001286393, intron 2 of 7)	911.0	NM_029468	75871.0	Mm.180410	NM_029468	ENSMUSG00000031728	Zfp821	4930566A11Rik|Znf821	zinc finger protein 821	protein-coding	2.90489892615175	2.74177527920037	2.7917310130282	2.43395980855368	2.68770375770875	2.7061044227535	2.65800501930899	2.45422335485028	-0.457501007181629	0.513007178918233	0.776079955542303
Merged-chr16-14163225-4	chr16	14163136	14163336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023317)	promoter-TSS (NM_023317)	-39.0	NM_023317	67203.0	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	7.78917614869461	8.03141358319225	8.05286899650284	8.19856348080412	8.08652608281247	8.06928258474203	8.21960453803799	8.19604268218638	0.139395688045665	0.408264033423265	0.704278459447095
Merged-chr19-41402240-4	chr19	41402158	41402358	+	917.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17188.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	4.24623859851845	4.24496016358616	4.11225419091202	4.42637827598206	3.53974583455846	4.4171165053632	4.04659816296901	3.90561175346664	-0.675376104710168	0.154562387987232	0.439801241388062
Merged-chr6-39539923-3	chr6	39539751	39539951	+	870.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172477, intron 1 of 18)	intron (NM_172477, intron 1 of 18)	17983.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	3.16811335810038	3.20301445902924	3.28023389240841	3.19887678996552	2.93267695999723	3.01974651507383	3.41575791043979	2.97930454553609	-0.444233096707856	0.446356123171412	0.73208670202825
Merged-chr19-61151851-3	chr19	61151744	61151944	+	687.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11004.0	NR_131954	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	3.04589686747467	2.88429499945897	2.98070912528124	2.43291727088507	3.23775950335743	3.28492940988922	3.41570262360443	3.27852138201574	1.89814618107309	0.00466108439453918	0.0451205393878559
Merged-chr6-125651533-3	chr6	125651427	125651627	+	781.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 34 of 51)	intron (NM_011708, intron 34 of 51)	-38892.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	3.3526790495017	3.23953365953795	3.51505309592684	3.55157819124913	3.3421756648633	3.40622216680846	3.34074393575295	3.4075557823696	-0.19296671813648	0.709416648971916	0.883531787804477
Merged-chr17-7917403-4	chr17	7917284	7917484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8616.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	6.4610423867992	6.75832100115248	6.70299142075507	6.69523006787001	6.68428409506624	6.5852549062042	6.63943712249359	6.60741398092827	-0.0452492898447972	0.824703472369977	0.932762913889733
Merged-chr2-124711232-4	chr2	124711124	124711324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57643.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	6.47659787791755	7.50261883711287	7.33417700058652	7.07636839929298	7.07333037347035	7.35623653044378	7.13237467057518	6.45386500955989	-0.149304872984671	0.5973962891894	0.825256992211092
Merged-chr17-42876626-4	chr17	42876519	42876719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009847)	promoter-TSS (NM_009847)	-195.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	6.63507209156723	7.09325060100183	7.29829255196986	6.58042280433212	6.83367323025214	6.92384995552694	7.06316203304205	6.98713817401401	0.0341014654893035	0.885874890416928	0.95718457248159
Merged-chr2-134644191-4	chr2	134644078	134644278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029148)	promoter-TSS (NM_029148)	-57.0	NM_029148	52837.0	Mm.264096	NM_029148	ENSMUSG00000034723	Tmx4	2810417D04Rik|4930500L08Rik|AI843224|AW046784|D2Bwg1356e|Txndc13|mKIAA1162	thioredoxin-related transmembrane protein 4	protein-coding	8.58058941946211	8.61891179945094	8.60508805921078	8.88270275038915	8.47680571109859	8.53504310898605	8.67089787472528	8.50929688347382	-0.170967071388398	0.277853867660016	0.589858344900601
Merged-chr17-26781024-4	chr17	26780941	26781141	+	839.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172149)	promoter-TSS (NM_172149)	-38.0	NM_172149	224630.0	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	4.06080357256114	4.21543485852104	3.75359575535152	3.92688921927286	3.70292484848038	4.09026844860945	3.68098585397777	4.30639429054315	-0.0855369086663538	0.85758032136541	0.94636842365961
Merged-chr5-135909683-4	chr5	135909587	135909787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018871, exon 2 of 2)	3' UTR (NM_018871, exon 2 of 2)	21768.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	7.05755706700927	6.8294994393062	7.42388571904609	7.20155639511791	6.7803419727173	6.92189157829434	7.08213339813457	7.28529651260868	-0.1644784940691	0.460467814470189	0.742687499720882
Merged-chr1-191328120-4	chr1	191328070	191328270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025864, intron 1 of 7)	intron (NM_025864, intron 1 of 7)	2205.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	6.50689262444623	6.80712570359084	6.40309155216887	6.66977044375833	6.53057503579213	6.46633536175477	6.61677281974615	6.5687571047425	-0.0981692471553792	0.646802838184112	0.851401409677112
Merged-chr10-23180225-4	chr10	23180123	23180323	+	882.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010167, intron 3 of 18)	intron (NM_010167, intron 3 of 18)	169667.0	NM_001347372	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	4.36703344831086	4.32764781941045	4.44876942431284	4.41910780923016	4.27334182911426	4.04532489884794	4.21720819965659	4.40606719583849	-0.357246056450061	0.355199437690059	0.661813745489821
Merged-chr3-116006875-4	chr3	116006776	116006976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163515)	promoter-TSS (NM_001163515)	530.0	NM_023214	66500.0	Mm.34550	NM_023214	ENSMUSG00000054414	Slc30a7	1810059J10Rik|2610034N15Rik|4833428C12Rik|AI467242|ZnT-7|ZnT7|Zntl2	solute carrier family 30 (zinc transporter), member 7	protein-coding	5.8132817238147	5.83710919271717	6.05203330883775	5.56158761511424	6.01247129496064	5.63915163666279	6.00127274127312	5.60412834739975	0.0412283271137181	0.881339728870196	0.955384724180766
Merged-chr6-122557187-4	chr6	122557100	122557300	+	951.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009645, intron 1 of 4)	intron (NM_009645, intron 1 of 4)	3391.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	5.18135111363279	5.02091102736468	4.68696548283428	4.73587368377284	4.72020908328937	5.32383625838147	4.70743602224462	5.23580043707244	0.206088620910271	0.571586069828935	0.810747376835395
Merged-chr12-87260683-4	chr12	87260544	87260744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134044, exon 3 of 19)	exon (NM_134044, exon 3 of 19)	3600.0	NM_134044	104799.0	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	5.6379431486459	5.78230378593066	5.63892692497432	5.79592489867255	5.38649793797708	5.64999983881849	5.38688581176921	5.78079699325827	-0.286627369054626	0.290503134746366	0.602708482806098
Merged-chr18-84091728-4	chr18	84091625	84091825	+	934.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146090, intron 1 of 1)	intron (NM_146090, intron 1 of 1)	3567.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	4.54926940771817	4.39315723008535	4.23057912239792	4.65739151400943	4.76304703567605	4.50653997652643	4.7487634523003	4.54706727748066	0.371507040881354	0.317380950960848	0.629303605918758
Merged-chr4-70378209-4	chr4	70378098	70378298	+	895.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145990, intron 4 of 36)	GSAT_MM|Satellite|Satellite	32237.0	NM_001313762	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	5.37309555876773	4.90891488412579	5.48911312988047	6.56215398719392	5.29813578501223	5.28951684718467	5.08264439782623	5.27672412957169	-0.885888610994227	0.0343216213973665	0.183083603349519
Merged-chr5-23975225-4	chr5	23975129	23975329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053090, intron 10 of 10)	intron (NM_053090, intron 10 of 10)	55083.0	NM_001310471	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	6.27319084497505	6.80950116915998	6.86940269338937	6.71970286771775	5.9132040715617	5.97637640615678	5.92040501659926	5.94659076386631	-1.13690752040628	2.42048017453595e-06	7.76418919978794e-05
Merged-chr11-63908693-4	chr11	63908582	63908782	+	815.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018805, intron 1 of 1)	ORR1E|LTR|ERVL-MaLR	13602.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	3.93984972885763	3.88871206241077	4.09755103386982	3.79165637238838	4.21667753172095	4.61111923376879	4.38295437590751	4.43937387330888	1.24374845484509	0.00211807158076493	0.0244466056506027
Merged-chr18-55389827-4	chr18	55389722	55389922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-397231.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	6.86493281484041	7.11884805540914	6.70337999359419	6.79968173990438	6.86256186326755	7.29315820584951	7.15792815547703	7.11191221507038	0.314913876636256	0.133070386457207	0.40621663944001
Merged-chr14-103034270-4	chr14	103034187	103034387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045657)	promoter-TSS (NR_045657)	-484.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	6.66768641628148	7.28124087024611	6.56763561367521	6.90423282555553	7.41044132494743	7.19713925736642	7.06771614434556	6.75779898781484	0.337162858733324	0.172038537198357	0.465252629537357
Merged-chr7-123397573-4	chr7	123397457	123397657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025304, intron 1 of 10)	intron (NM_025304, intron 1 of 10)	-10260.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	6.3774818051735	6.55321199114847	6.39700020396038	6.80516590234786	6.87653606055382	6.39923347186138	6.46883348304471	6.54679178594823	0.0531644531819745	0.823742452401973	0.932387119655244
Merged-chr6-125040457-3	chr6	125040355	125040555	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133345, intron 1 of 7)	intron (NM_133345, intron 1 of 7)	607.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	3.50272817352938	3.42590975284353	3.32542768425122	3.37676901817161	3.89411391993278	3.56156737977959	3.59451263230503	3.50129772385936	0.812156354009305	0.100575900728887	0.348127408966225
Merged-chr9-100734253-4	chr9	100734172	100734372	+	988.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009282, intron 3 of 33)	intron (NM_009282, intron 3 of 33)	90824.0	NM_001357265	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	5.9285882913435	5.52185826357439	5.84217891742522	6.41334106834949	5.45845256192941	5.35629812656808	5.59145414962193	5.58865675573869	-0.80240792244386	0.00910910067193592	0.0737778261041623
Merged-chr5-36530536-4	chr5	36530394	36530594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001113364, exon 1 of 12)	5' UTR (NM_001113364, exon 1 of 12)	129.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	6.58869170861417	6.20593705476936	6.12901467180215	6.80999607352604	5.6278308290839	6.00762564699423	5.87389065919859	6.14505137192432	-0.85707487463064	0.00195966586494125	0.0230760056548911
Merged-chr7-45643739-4	chr7	45643643	45643843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172418, intron 7 of 9)	intron (NM_172418, intron 7 of 9)	3766.0	NM_172418	74490.0	Mm.107442	NM_172418	ENSMUSG00000042918	Mamstr	2810022D01Rik|5430432N15Rik|AW743872|Mastr	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding	6.91727855591674	7.07057883132618	7.13558306609856	6.46124624625909	7.02231987419987	7.13391358640271	6.87024269628834	6.88698472953549	0.105647251753501	0.647089803569771	0.851605116430591
Merged-chr2-36271942-3	chr2	36271861	36272061	+	771.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41535.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	3.48753321111045	3.59839240321572	3.5445365747579	3.37923489805649	3.71221139775891	3.54370457405076	3.5842681077475	3.79266250915373	0.539210161396696	0.259878857701704	0.571684145019647
Merged-chr7-19830928-4	chr7	19830840	19831040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8185.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	8.50196046700307	8.26303756280177	8.61351411280821	8.5620102736147	8.23829980149592	8.10595480280802	8.36948318521581	8.32296491543305	-0.290412404941021	0.0758508800667716	0.297563370385402
Merged-chr6-51606411-4	chr6	51606306	51606506	+	930.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61113.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	5.43663851044463	5.13046359226944	5.53872928388786	6.00801577052744	4.68451062338099	4.80598137134239	4.94056625868205	4.92255969148923	-1.40539980975701	5.67890226338336e-05	0.00126199995068799
Merged-chr11-109394972-4	chr11	109394875	109395075	+	877.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 3 of 3)	intron (NM_010303, intron 3 of 3)	-30971.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	4.38295963740903	4.33016421535314	4.21517693299004	4.55571395832578	4.1203244090019	4.24685232753259	3.83994054336456	3.96553905495597	-0.845329435636795	0.0432289057504296	0.211593335332817
Merged-chr15-38248051-3	chr15	38247982	38248182	+	857.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28879.0	NM_008757	18285.0	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	3.7830696178125	3.95714610728733	3.55896375546098	3.41628001829614	3.81022062965481	4.05340629056782	4.08232083859414	3.49469247181196	0.551138468493152	0.274405115208545	0.58617333499682
Merged-chr8-123065028-2	chr8	123064928	123065128	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153176)	promoter-TSS (NM_153176)	-480.0	NM_153176	234847.0	Mm.292075	NM_153176	ENSMUSG00000000738	Spg7	AI452278|AU015315|Cmar|PGN	SPG7, paraplegin matrix AAA peptidase subunit	protein-coding	3.08994221154363	3.22730843197136	3.09031592597116	3.05744718452481	3.18260395058236	3.07103254160168	3.19318739856151	3.0888045281178	0.0888567901247712	0.872092558142909	0.951880791739407
Merged-chr1-156010220-3	chr1	156010121	156010321	+	878.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144791, intron 6 of 6)	MTB|LTR|ERVL-MaLR	24596.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	3.18820285735955	3.0817554443669	3.1189079815426	2.55470246172143	3.74218591389421	3.55891556326908	3.58064378852511	3.98191248773331	2.75874842472833	1.53327065204023e-05	0.000403313642799598
Merged-chr7-122251915-4	chr7	122251826	122252026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32430.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	5.45268273405776	5.5642319400802	5.25859048429168	5.53373009899451	5.73041570727591	6.07867745558371	6.01448856991917	5.61904740558406	0.668799610509533	0.0150550116017618	0.105089798058429
Merged-chr17-35841446-4	chr17	35841309	35841509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001010833)	promoter-TSS (NM_001010833)	-89.0	NM_001010833	240087.0	Mm.218511	NM_001010833	ENSMUSG00000061607	Mdc1	6820401C03|AA413496|Nfbd1|mKIAA0170	mediator of DNA damage checkpoint 1	protein-coding	8.8744926108967	9.15107112989372	8.70792772545699	8.67466104444033	8.96209949803343	9.11757021078664	8.84366461415702	8.6255785784445	0.0435185845550073	0.811201629038679	0.926883359837906
Merged-chr2-150823190-4	chr2	150823088	150823288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 14 of 19)	ORR1F|LTR|ERVL-MaLR	19382.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	6.28771975979251	6.41680397849213	6.009382922392	6.24788188212993	6.07603879301305	6.22926541492708	5.83796761974538	6.00510095924806	-0.319802303005659	0.185104778899172	0.482903247967107
Merged-chr17-49428350-4	chr17	49428252	49428452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028464)	promoter-TSS (NM_028464)	-12.0	NM_028464	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	7.59666152964955	8.01397896974176	7.34656337977807	7.89966261268977	7.99464846880975	8.00016190728421	8.23278910481496	7.72243438901699	0.326386949947448	0.121624916751056	0.386307003544106
Merged-chr9-46933420-3	chr9	46933317	46933517	+	655.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19814.0	NR_015605	73040.0	Mm.265384	NR_015605	ENSMUSG00000099696	2900052N01Rik	AU067665	RIKEN cDNA 2900052N01 gene	ncRNA	3.1066058631003	3.28871061354319	3.04419621061822	3.11492883016312	2.89106248611512	3.15443407889423	3.41501624796642	3.16524738096152	0.0907310416540898	0.875803716229967	0.953343358207453
Merged-chr3-60527102-4	chr3	60527004	60527204	+	977.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	MIRc|SINE|MIR	25925.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	5.65785132724565	5.65434042915809	5.33691627385745	5.86577807979216	5.73888721732786	5.18410916856427	5.82056459787745	6.17586929413957	0.206564409110846	0.51563271787339	0.777638858942518
Merged-chr17-73951154-4	chr17	73951036	73951236	+	920.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011723)	promoter-TSS (NM_011723)	-940.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	4.10831207799492	4.05087193203909	3.50545223730537	4.16506995240031	3.88120206996517	4.27773352949093	4.09040388302621	3.6968997691152	0.0335426868026815	0.945740336876155	0.980637640044691
Merged-chr2-32966905-4	chr2	32966784	32966984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	3583.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	6.91597101069616	7.04682180884489	6.80617256538376	6.95359849696116	7.08545654743396	7.13291282748639	7.00791031926644	6.8718228651518	0.128312730902051	0.50367855891731	0.770507049123075
Merged-chr4-43058898-4	chr4	43058793	43058993	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310758)	promoter-TSS (NM_001310758)	-60.0	NM_021468	22249.0	Mm.128892	NM_021468	ENSMUSG00000028456	Unc13b	Munc13-1|Munc13-2|Unc13a|Unc13h1|Unc13h2	unc-13 homolog B (C. elegans)	protein-coding	5.8555610344911	6.00113906691648	5.62117802305412	5.71709617916166	5.47044681645214	5.50980956940873	5.39859291783686	5.1548596657729	-0.700227200865957	0.0120189312139595	0.0900616385807373
Merged-chr8-83899360-1	chr8	83899260	83899460	+	596.0	f1_balb.idr	promoter-TSS (NM_181039)	promoter-TSS (NM_181039)	-738.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	2.56490252075608	2.43580832367785	2.34900942317923	2.67520233856228	2.61874316257188	2.73516603267337	2.68351413401621	2.95984233639435	1.179200644038	0.102333155385431	0.351322609712998
Merged-chr3-30498747-3	chr3	30498603	30498803	+	984.672241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361034, intron 1 of 16)	intron (NM_001361034, intron 1 of 16)	10972.0	NM_001361034	14013.0	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	4.22568142103911	4.89054058631831	4.91470835774653	4.83178902275816	4.00469347185252	3.76152979218802	3.88742926792182	3.90046044456041	-2.1402242260509	2.80757124020877e-06	8.90950126200714e-05
Merged-chr8-107436480-5	chr8	107436397	107436597	+	912.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025830)	promoter-TSS (NM_025830)	99.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	4.32475926296203	3.68985724484995	4.23942438101122	3.80938583874915	4.65843625512669	4.27522373666391	4.56452495483427	3.8225099722465	0.829510224254693	0.0852675312827443	0.317961945157924
Merged-chr4-34797754-3	chr4	34797658	34797858	+	776.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19392.0	NM_025471	66291.0	Mm.28071	NM_025471	ENSMUSG00000028295	Smim8	1810030N24Rik|2810406B13Rik	small integral membrane protein 8	protein-coding	3.51837468625178	3.55196057617749	4.01381112441284	3.79774426149804	3.97574424002619	3.2912342354458	3.67353398155778	3.83591102896266	-0.032850823039396	0.950884201539356	0.982479120066335
Merged-chr19-3323321-4	chr19	3323220	3323420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013495)	promoter-TSS (NM_013495)	19.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	7.10964819623659	7.40746651544545	7.31964186316341	6.92210275793887	7.2211536041343	7.35754259796674	7.1219018841904	7.26291846509526	0.0663338089613207	0.742424537010704	0.898494026733066
Merged-chr18-6774854-4	chr18	6774733	6774933	+	983.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181070, intron 2 of 6)	intron (NM_181070, intron 2 of 6)	9666.0	NM_001278447	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	5.25367679642884	5.09628422289673	5.25457358842453	5.52706281402028	5.33341011132302	5.16238477122917	4.99847563858748	5.12365031379646	-0.258316123937313	0.404583732025103	0.701668180444784
Merged-chr17-52725358-4	chr17	52725262	52725462	+	952.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001031811, intron 1 of 15)	intron (NM_001031811, intron 1 of 15)	122653.0	NM_001031811	211468.0	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	5.15759224213139	4.55688575237146	4.65998545131603	4.70632526616667	4.74232107822112	4.22189262625732	4.4765308733072	4.30787615136675	-0.696401231426829	0.0821841084366149	0.311241428806055
Merged-chr2-84482040-4	chr2	84481936	84482136	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18B_MM|LTR|ERVK	-5261.0	NM_001177320	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	4.99702326531146	5.25965078452735	5.11323776139342	4.65790521676232	5.98236587635463	5.79867022250324	5.7350097899632	5.82543813022266	1.47840737822484	5.72792571946303e-07	2.09510804103627e-05
Merged-chr2-12084583-4	chr2	12084530	12084730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-216616.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	5.21156740643975	5.14549624317308	5.24464193724533	5.67517802337266	5.53037578380701	5.06095215348492	5.42230439804437	5.33290590892359	-0.00490115299111426	0.9877525558106	0.995345704315685
Merged-chr6-87802653-4	chr6	87802566	87802766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	ORR1F|LTR|ERVL-MaLR	7091.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	5.01809719393772	5.19380456343864	5.08974980737474	5.24694617545144	5.61326222091042	5.12165859162266	5.19492300487899	5.21703106600541	0.307436993543682	0.321095169855436	0.632824656919975
Merged-chr13-101712223-3	chr13	101712131	101712331	+	752.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	-19601.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	3.90062532915997	3.51648621255646	3.94730575506523	4.14302569577211	4.03372530019379	3.75963199795489	3.50988370367456	3.58143182939117	-0.451950828992419	0.380459076261067	0.682890271060785
Merged-chr1-190911096-3	chr1	190911017	190911217	+	974.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178775, intron 1 of 14)	intron (NM_178775, intron 1 of 14)	653.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	3.99424582548805	4.3539360419615	4.24478223662101	3.80686864624587	3.60803608304479	3.74454720976658	3.54944389876954	3.62252411480775	-1.41272352611036	0.00395409684940608	0.0397077680084474
Merged-chr5-147430193-4	chr5	147430162	147430362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001359433, exon 1 of 20)	5' UTR (NM_001359433, exon 1 of 20)	106.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	5.58211545366257	6.40432214513545	6.43338498557543	6.13941550282344	5.96358858405475	6.4709890861838	6.36749055337349	6.29121987629656	0.147531694860178	0.600708779056178	0.826921018931019
Merged-chr18-60710902-3	chr18	60710818	60711018	+	957.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348100, intron 2 of 14)	intron (NM_001348100, intron 2 of 14)	16648.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	4.14635600766556	4.07526086734444	3.92303586532208	3.80215199150415	3.6008535594299	3.88741273262247	3.90633278331824	3.87083943094112	-0.484939743372534	0.286777569877216	0.598450281341885
Merged-chr5-115530658-4	chr5	115530535	115530735	+	927.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	23959.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	4.23510391703956	3.8351949305127	4.36906333285827	4.36596850685193	4.38166248876964	4.31502515055717	4.34911305614877	4.66496582716836	0.494979104951756	0.229969366759919	0.539109757158524
Merged-chr2-154677200-4	chr2	154677118	154677318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	20192.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	6.40448268554317	6.68068797382603	6.47678142513469	6.39576515451001	6.78318526634853	6.98484270895653	6.44396207613351	6.88376962676806	0.428228669888614	0.0549657231875545	0.244964140815976
Merged-chr2-38511425-2	chr2	38511325	38511525	+	815.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159631)	promoter-TSS (NM_001159631)	-272.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	2.96436414217564	2.74991206704878	2.79965795659053	2.69023951763874	2.54985971442301	2.64419919234094	2.46056833683533	2.60874926834795	-1.22090172794476	0.0756893722722558	0.297169313398658
Merged-chr4-99116085-4	chr4	99116003	99116203	+	796.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026082, intron 1 of 47)	intron (NM_026082, intron 1 of 47)	4812.0	NM_001290636	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	4.22633907584534	3.97030468413566	4.39624663042162	4.3538584597015	3.99982347504681	4.52542680562232	4.06648694457224	4.26877224152672	-0.0682409084325796	0.871955371153872	0.95184282437484
Merged-chr10-75773465-4	chr10	75773339	75773539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010027)	promoter-TSS (NM_010027)	-65.0	NM_010027	13202.0	Mm.298947	NM_010027	ENSMUSG00000001666	Ddt	C78655	D-dopachrome tautomerase	protein-coding	7.14735102510718	7.16182962066445	7.02447635549866	7.560044870495	7.41559159114755	7.44928550911068	7.46002906344622	7.25646340463266	0.188351869402211	0.356800077491702	0.66317411451208
Merged-chr2-58802665-4	chr2	58802585	58802785	+	975.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47501.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	5.12323679868965	5.40722877331051	5.52469383712452	5.5269320324088	5.67523318324756	5.1914258229486	5.41560333323173	5.59760162654247	0.137085921843647	0.64310407751361	0.849459897971419
Merged-chr10-17775690-2	chr10	17775590	17775790	+	916.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20529.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	3.28674753673564	3.67550324382132	3.05521752634484	2.62859598691472	3.02403666513112	2.88592691418338	2.97993199261163	3.11547311559999	-0.842427157273753	0.221407059013033	0.529463056908312
Merged-chr2-59616112-4	chr2	59616031	59616231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	4089.0	NM_198294	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	5.44363263598246	5.58053180163612	5.50086068031525	5.79836344358341	5.42193490054862	5.26128616137744	5.38855854792904	5.60246479320823	-0.311085507192709	0.270681196437329	0.582448589171761
Merged-chr17-35825295-4	chr17	35825207	35825407	+	875.4583130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008027, intron 6 of 12)	intron (NM_008027, intron 6 of 12)	1950.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	3.21963138869134	3.36860083169826	3.22007732385615	2.69693603623811	3.16505235954595	3.33452287950304	3.14971068256362	2.96853550529263	0.047341385976691	0.939941965537267	0.978363933407335
Merged-chr11-68871952-4	chr11	68871864	68872064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16589.0	NM_177060	320040.0	Mm.305696	NM_177060	ENSMUSG00000046490	Rnf222	9930039A11Rik	ring finger protein 222	protein-coding	6.55488958527681	6.45314863142765	6.52410051845826	6.6707873980325	6.37577931428944	6.52745721481926	6.07477834722067	6.58249596205744	-0.231831765891702	0.305757274745993	0.618175795578737
Merged-chr10-4346974-4	chr10	4346881	4347081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031185, intron 2 of 3)	CpG	40494.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	5.78658631490141	5.6230167040478	5.55402148259693	5.8288578894314	5.90159077129863	5.70133028535301	5.97362374431097	5.63254104120058	0.168675291744446	0.519083213723875	0.77984451962357
Merged-chr18-5945180-4	chr18	5945065	5945265	+	951.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	190933.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	6.57518723494979	6.47911374590566	6.50751198919174	6.76442689744666	4.61676740578072	5.21693124508036	5.16257675782958	5.01927280013375	-2.70556061184965	1.35435818970478e-20	4.96916812293797e-18
Merged-chr19-3929642-4	chr19	3929539	3929739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026316)	promoter-TSS (NM_026316)	77.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	6.6576559300616	6.69207295035083	6.74293942105506	6.41346104311129	6.33088786121695	6.38802959075815	6.27758663773429	6.1850174912178	-0.475088904598413	0.0320266261258437	0.174871373198176
Merged-chr15-99333158-4	chr15	99333062	99333262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310622, intron 4 of 25)	intron (NM_001310622, intron 4 of 25)	29878.0	NM_001348256	54614.0	Mm.358668	NM_018786	ENSMUSG00000023007	Prpf40b	2610317D23Rik|Hypc	pre-mRNA processing factor 40B	protein-coding	7.46578288501264	7.64154909361526	7.17118383112654	7.2918529191423	6.98688430569206	7.32520189707297	7.13521073535439	7.09515993210286	-0.363014639403927	0.0699370304056159	0.283004304313503
Merged-chr3-32510544-4	chr3	32510456	32510656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144519)	promoter-TSS (NM_144519)	6.0	NM_001161818	67778.0	Mm.285620	NM_144519	ENSMUSG00000027667	Zfp639	6230400O18Rik|ANC-2H01|ZASC1|Znf639	zinc finger protein 639	protein-coding	8.43194516023396	8.6373548766295	8.91316471488772	8.66276054967286	8.73646860353771	8.65800197979582	8.8659247523336	8.57326283476532	0.0518456807466614	0.75635111411342	0.904249726245513
Merged-chr1-171222588-4	chr1	171222496	171222696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037170)	promoter-TSS (NM_001037170)	-82.0	NM_001037170	641376.0	Mm.288374	NM_001037170	ENSMUSG00000005674	Tomm40l	-	translocase of outer mitochondrial membrane 40-like	protein-coding	8.33533144013532	8.8742272642121	8.57739883467548	8.59392523017917	8.49424154657084	8.74596570383947	8.46130950583802	8.44453003126889	-0.0889255698864363	0.612776082982388	0.832838923509562
Merged-chr9-100606201-3	chr9	100606098	100606298	+	822.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35113.0	NM_001101483	245020.0	Mm.236289	NM_001101483	ENSMUSG00000070287	Slc35g2	Gm519|Tmem22	solute carrier family 35, member G2	protein-coding	3.85399434082383	3.82770193575701	3.80476973834827	3.9559007299605	3.4734069551107	3.76070239775796	3.73790441299643	3.99066127285888	-0.358282195068711	0.445553837808529	0.731548178201081
Merged-chr18-80319375-4	chr18	80319275	80319475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190373, intron 3 of 3)	intron (NM_001190373, intron 3 of 3)	44879.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	6.2448759391417	5.93340867477613	6.01094636022052	6.17975339830015	5.85086720399181	5.84458105603195	5.95867273700363	6.18706312856429	-0.217549547024923	0.376803900310337	0.679494401442451
Merged-chr2-116817841-4	chr2	116817736	116817936	+	901.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60855.0	NM_001355572	67356.0	Mm.131623	NM_026104	ENSMUSG00000027355	Tmco5	1700095F04Rik|Tmco5a	transmembrane and coiled-coil domains 5	protein-coding	4.05062904263957	4.30979362062119	4.7153257928076	4.51896885167228	4.31069594371171	4.12020633983913	4.40585248322768	4.29532701288664	-0.324919179219132	0.426983341604585	0.718234557355738
Merged-chr5-3491989-3	chr5	3491897	3492097	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-51836.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	3.48053396892023	3.57711624545136	3.48099596661699	3.69742951688031	3.62692217258962	3.53842256266933	3.23075842702642	3.3035015836536	-0.423973978182615	0.417824258374636	0.711477848869167
Merged-chr12-35641132-4	chr12	35641020	35641220	+	964.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	45184.0	NR_045051	71581.0	Mm.100110	NR_045050	ENSMUSG00000113985	9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	5.56562037299008	5.56583318014293	5.14129603055113	5.0235258802381	5.31994091366914	5.3817370177815	4.85825982237195	5.1377851217169	-0.262776312347416	0.431133902164378	0.721486037975084
Merged-chr12-87391528-3	chr12	87391423	87391623	+	825.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3168.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	3.49219744397434	3.96812728244536	3.60517954607033	3.51475793633409	3.14042394251004	3.66835577364478	3.83214512514258	3.49080403130751	-0.329288194316863	0.549916326270579	0.79819307525845
Merged-chr2-174077918-4	chr2	174077812	174078012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102423, intron 1 of 7)	intron (NM_001102423, intron 1 of 7)	861.0	NM_001102423	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	6.31462706043168	6.09937963658536	5.98632488777582	6.23624794556387	6.2703900336741	6.50876749418425	6.2091440488241	6.48032483065676	0.298391982863227	0.195948097223335	0.496883703441154
Merged-chr3-89246937-3	chr3	89246855	89247055	+	587.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310625, intron 2 of 4)	intron (NM_001310625, intron 2 of 4)	482.0	NM_001310625	66059.0	Mm.177991	NM_025327	ENSMUSG00000042747	Krtcap2	0610010I12Rik|Kcp2	keratinocyte associated protein 2	protein-coding	3.25249225418362	3.03621662199879	3.41598382244075	3.27762177212941	3.24948437703435	3.30483952825999	3.24082385187211	3.30781608574499	0.0850704143546243	0.874326547214931	0.952841261958902
Merged-chr11-49755433-3	chr11	49755333	49755533	+	964.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38722.0	NM_013529	14584.0	Mm.24402	NM_013529	ENSMUSG00000020363	Gfpt2	AI480523|GFAT2	glutamine fructose-6-phosphate transaminase 2	protein-coding	3.39349446663893	3.86903595523826	3.90545152216461	4.29411155808049	3.66850868175893	3.76381123398599	3.79206440138192	3.75391820882508	-0.507855905475114	0.327679231354403	0.639130025464207
Merged-chr18-33213958-4	chr18	33213852	33214052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133774)	promoter-TSS (NM_133774)	-90.0	NM_001347624	170459.0	Mm.127058	NM_133774	ENSMUSG00000024378	Stard4	4632419C16Rik|9030213J02Rik	StAR-related lipid transfer (START) domain containing 4	protein-coding	8.83403857641414	8.81814796621906	9.0287224410339	9.19819253061765	9.00761064519386	9.0213282941587	9.28682164667294	8.65303631731386	0.0359454617120571	0.845346867691445	0.941494988192917
Merged-chr3-146108193-4	chr3	146108105	146108305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172864)	promoter-TSS (NM_172864)	-169.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	6.75298487086284	6.83942802497944	6.60559498951536	6.85821675021606	7.68090983764899	7.32913099268116	7.5025327609676	7.32660322246591	0.953449833577895	1.25630581159325e-06	4.30819780709774e-05
Merged-chr18-30160452-3	chr18	30160337	30160537	+	962.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112428.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	4.47408867330284	4.20347020734675	4.43514688292969	5.19268118357758	3.77187266311707	3.89248785914296	4.24359529949253	4.06204065097999	-1.59122780620046	0.000903598196880691	0.0124260463786265
Merged-chr18-84293719-4	chr18	84293605	84293805	+	926.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	205547.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	4.39956989747003	4.47425941945533	4.60645669733182	4.37827206983173	4.46640079641542	4.61741722506386	4.54654393404929	4.60343007711598	0.216033268832055	0.544734790486759	0.795488031924357
Merged-chr2-73386011-1	chr2	73385911	73386111	+	673.0	f0_balb.idr	intron (NM_001276444, intron 1 of 15)	intron (NM_001276444, intron 1 of 15)	469.0	NM_001276443	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	3.83710119484141	4.02889342960062	3.88646595589461	3.35005297033653	3.55256981556048	3.85536136732186	3.66465240538592	4.01993579991455	-0.0311347658328773	0.951615997268164	0.982792981377963
Merged-chr5-100644050-4	chr5	100643921	100644121	+	817.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30235.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	3.52497248580001	3.45402207457337	3.52542684355113	3.50217620294952	4.00703953535953	3.64162021607791	3.72213219209547	3.68596058692722	0.869986968579073	0.066102415511023	0.273855062782091
Merged-chr7-109486485-4	chr7	109486372	109486572	+	821.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181853, intron 1 of 19)	intron (NM_181853, intron 1 of 19)	7266.0	NM_001170913	330627.0	Mm.183528	NM_181853	ENSMUSG00000031026	Trim66	Kiaa0298-hp|Tif1d	tripartite motif-containing 66	protein-coding	3.64751216443534	3.46675856737505	3.53205846989997	3.72941358382092	3.78325552880246	3.5865290080144	3.96905445271037	4.10605187486609	0.79021253463236	0.101426461067785	0.349490825767668
Merged-chr4-42949776-4	chr4	42949682	42949882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355440)	promoter-TSS (NM_001355440)	-85.0	NM_001355438	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	8.6915835844083	8.93352849926026	8.68408005095757	8.82593050300804	8.77173343415564	8.97268461393961	9.09133139102968	8.74356710985465	0.137739001918349	0.38919860871398	0.689449435545467
Merged-chr16-16535464-1	chr16	16535364	16535564	+	548.0	f0_c57.idr	intron (NM_001301817, intron 1 of 16)	RMER10A|LTR|ERVL	-8053.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	2.87690083638352	2.78199348553677	2.87725947348231	2.63149154418349	3.06985750527251	2.70930448030701	3.13930400429728	2.74646995565955	0.653067854901877	0.306020674086433	0.61851920821938
Merged-chr9-104604888-2	chr9	104604772	104604972	+	736.166626	f0_balb.idr|f1_balb.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	35389.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	4.21518788757768	3.59845254448889	4.32746438372027	4.96415102526189	3.22459481220275	3.18409765947208	3.13580845440082	3.14375687246491	-4.64831861736855	6.24460875789595e-05	0.00136512594219372
Merged-chr13-112116217-4	chr13	112116107	112116307	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-172244.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	4.55764369798909	4.43985791972018	4.82151658313373	4.92870067775011	4.44219336226515	4.73209798135946	4.45213805945488	4.71223344539259	-0.281180707274517	0.449858663018904	0.734903715200995
Merged-chr1-191087147-4	chr1	191087033	191087233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11281.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	4.8921106420613	4.99187347161273	5.12150498382975	4.62309601913334	4.81227162121344	4.87692341628224	5.09601858951541	4.73801065000114	-0.0357893701591416	0.917025876080244	0.969376770379679
Merged-chr13-6228521-3	chr13	6228414	6228614	+	873.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-319643.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	4.53263898802323	4.19226455117303	4.63544485817919	4.61622985500047	3.89639475084632	3.62869988232979	4.0993914256336	4.01265917745686	-1.51053464962883	0.000697598145126739	0.0101108406377471
Merged-chr19-37511093-4	chr19	37510992	37511192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39326.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	5.71654327149456	5.62159404805667	5.23302237146989	5.19668868605412	5.45169744419781	5.27379666646952	5.68820203386527	4.80817471276963	-0.188259444123239	0.582896962965106	0.816813129774452
Merged-chr13-52579691-4	chr13	52579576	52579776	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGGA)n|Simple_repeat|Simple_repeat	-3761.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	4.77671383326971	4.36441966324267	4.29938682439013	4.53993237898116	4.41680602649458	4.47628566232734	4.28089118630753	4.83875626239711	0.0203603059979381	0.958432257608699	0.985180346775053
Merged-chr16-49843944-2	chr16	49843844	49844044	+	720.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-11710.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	3.40371760874287	3.75422938863613	3.46235576041824	3.0886381048187	3.28807383368403	3.69101662064366	3.83377475041699	3.21137270831791	0.273984438109534	0.635249418798671	0.845633612363053
Merged-chr8-70647017-4	chr8	70646934	70647134	+	870.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023217, exon 5 of 5)	3' UTR (NM_023217, exon 5 of 5)	12704.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	3.98759488191578	3.83672377074027	3.93398003674307	4.0456530995985	4.14049169750442	4.6011585412527	4.29517419544704	4.43036360469127	1.02505133923136	0.0135132543587268	0.0975913080356957
Merged-chr11-46842448-4	chr11	46842349	46842549	+	958.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 8 of 8)	(A)n|Simple_repeat|Simple_repeat	31650.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	5.11537809160789	4.78319688183567	5.98872799498916	5.73803823826898	5.06486016067902	4.80244880787534	5.3699155006517	5.3065637121531	-0.611909400928302	0.120714899227432	0.384680506725841
Merged-chr2-3475059-4	chr2	3474960	3475160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022724)	promoter-TSS (NM_022724)	-74.0	NR_027509	64707.0	Mm.23483	NM_022724	ENSMUSG00000026646	Suv39h2	4930507K23Rik|AA536750|D030054H19Rik|D2Ertd544e|KMT1B	suppressor of variegation 3-9 2	protein-coding	7.92924864949839	8.11155909373401	7.90869987510946	8.03375188695937	8.09562274817305	8.01055419785746	8.35147330843253	8.02247182009279	0.162393972773314	0.333275817463226	0.644083500616735
Merged-chr10-128612847-4	chr10	128612773	128612973	+	842.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13633.0	NM_013765	27370.0	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	3.84084635566893	3.54558748075607	3.78683486833038	3.71798101460035	4.14163360158157	4.01688314779111	4.02129308484018	4.39311434234425	1.17245145099982	0.00735877362925856	0.0631373817390612
Merged-chr2-160873081-4	chr2	160872971	160873171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177263)	promoter-TSS (NM_177263)	-81.0	NM_177263	320799.0	Mm.436734	NM_177263	ENSMUSG00000035877	Zhx3	1810059C13Rik|4932418O04Rik|9530010N21Rik|Tix1|mKIAA0395	zinc fingers and homeoboxes 3	protein-coding	7.03411170416381	6.47242712402035	6.76422274217414	6.72688487127057	6.74581044354682	7.03731394257636	6.7440779100345	6.80190594567593	0.105170567805363	0.629422505974218	0.842199875042087
Merged-chr5-143679779-4	chr5	143679684	143679884	+	873.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163548, intron 1 of 12)	intron (NM_001163548, intron 1 of 12)	28543.0	NM_001163548	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	4.65597828890681	4.3515267808298	4.4341003905381	4.58567199131824	4.24945715676084	4.00969605955908	4.24180637106845	4.30335229249996	-0.733559896815712	0.0604731429600529	0.259818786910944
Merged-chr2-104888176-4	chr2	104888097	104888297	+	965.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177600, intron 1 of 17)	MIRb|SINE|MIR	1873.0	NM_177600	211936.0	Mm.416538	NM_177600	ENSMUSG00000045106	Ccdc73	2210415I11Rik|4931417A20|AV080665|BC095976	coiled-coil domain containing 73	protein-coding	4.92829225017801	4.67600061511966	5.14152551764779	5.042822611249	4.59441052661404	4.72341879722294	4.69106597239567	4.35173003951605	-0.762986244176753	0.031420090921936	0.172645565210166
Merged-chr13-119801125-4	chr13	119801019	119801219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9997.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	5.31970247708656	5.5057151530248	5.44388883068224	5.71241764429437	5.69430124748581	5.67599850475063	5.63098155218692	5.52528012524733	0.190370732336261	0.488078963206968	0.761126159857708
Merged-chr4-126162739-4	chr4	126162616	126162816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025856)	promoter-TSS (NM_025856)	-51.0	NM_025856	66938.0	Mm.29813	NM_025856	ENSMUSG00000073758	Sh3d21	1700029G01Rik|AU019788	SH3 domain containing 21	protein-coding	7.38364421704108	7.83058616991374	7.24945225954605	7.051643428689	7.58614359674696	7.67518370101698	7.25626357670378	6.73676238465859	-0.0590658473121893	0.824154256591824	0.932482704694281
Merged-chr5-65476029-4	chr5	65475932	65476132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133697, intron 1 of 4)	intron (NM_133697, intron 1 of 4)	16803.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	5.56090134432589	5.86229186151215	6.00697121990923	5.9441381158707	5.91497905237662	5.59154904301025	5.254856033346	5.50058677864365	-0.4249628584179	0.145818031910205	0.425620507395083
Merged-chr13-113507873-2	chr13	113507773	113507973	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10C|LTR|ERVK	-5029.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	3.12085508298521	2.79653338031228	3.01239324247472	2.64106510078993	2.72975745542621	2.7991616775176	3.00016159616458	2.89185274694588	-0.179459645416359	0.780517659999812	0.914536684873272
Merged-chr2-58163582-3	chr2	58163461	58163661	+	832.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045895)	promoter-TSS (NR_045895)	-413.0	NR_045896	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	3.25826746802145	3.30208517381593	3.71573557345478	3.44160888393293	3.17898291473357	3.24198929114763	3.51743884471606	3.12929074550187	-0.594342195464718	0.285569339225786	0.597312371341529
Merged-chr2-91202941-4	chr2	91202825	91203025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007387)	promoter-TSS (NM_007387)	13.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	6.48117697738702	6.51404346435496	6.44786898881616	6.51059594128682	6.61549024337702	6.69160932378537	6.72163640032824	6.37166221173922	0.168997996783507	0.421315186561721	0.713933904636989
Merged-chr10-88683097-4	chr10	88682979	88683179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011461)	promoter-TSS (NM_011461)	-56.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	7.30456870704281	7.15109683952056	7.13108824255646	7.29349302989995	7.29292223173184	7.07780682152965	7.14116831495693	7.2273355227322	-0.04578999215022	0.802366693560126	0.923837898429573
Merged-chr10-17589322-4	chr10	17589223	17589423	+	946.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133905.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	3.64149040427885	4.2516557341291	4.22019083402577	4.09425296745681	3.82869283743294	4.25802103091769	4.28208650037341	4.03562827172999	0.0847186021241051	0.853325292267484	0.944778126558311
Merged-chr4-98396071-4	chr4	98395981	98396181	+	978.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005784, intron 1 of 19)	CpG	255.0	NM_172696	12695.0	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	5.36601325317388	5.46059438048535	5.21667389468224	5.71303170584526	5.22769511307281	4.90118813065317	5.34008822192463	4.92896254034674	-0.633642264608324	0.0466868843937097	0.222148923341123
Merged-chr2-158306355-4	chr2	158306249	158306449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008489)	promoter-TSS (NM_008489)	-144.0	NM_008489	16803.0	Mm.218846	NM_008489	ENSMUSG00000016024	Lbp	Bpifd2|Ly88	lipopolysaccharide binding protein	protein-coding	5.51857692756271	5.82223406813165	5.58110866715258	5.41409229735925	6.40216025450287	6.34846866131698	6.62005697967359	6.07054601709213	1.24675646860149	1.26025257881394e-06	4.31681993779582e-05
Merged-chr4-139191719-4	chr4	139191645	139191845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1154.0	NM_009798	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	6.23286422377369	6.39732679254839	6.03493562305187	5.99149577623492	6.03048501179756	6.14448461045849	6.0871581909918	5.79633449543671	-0.229401979040856	0.356297017032058	0.662751930573482
Merged-chr10-127126827-4	chr10	127126729	127126929	+	798.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-5669.0	NM_001171026	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	4.02846261760551	3.94346426141168	3.53881351801611	3.8527400503037	3.90210451933323	4.05716478664956	3.91821162419479	4.11407633035945	0.395505885799518	0.376274014755386	0.679103048094909
Merged-chr3-79128011-4	chr3	79127926	79128126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	16861.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	6.49119214873588	6.62802575979328	6.26320163894355	6.51656288606006	7.03060373464846	6.78583559544384	6.7104711045279	7.03178857996321	0.593352049822589	0.00547103611062648	0.0507589780133319
Merged-chr2-130840065-4	chr2	130840009	130840209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311147)	promoter-TSS (NM_001311147)	36.0	NM_029432	228602.0	Mm.271990	NM_028367	ENSMUSG00000027309	4930402H24Rik	2810487F15Rik|AI413763|C78926	RIKEN cDNA 4930402H24 gene	protein-coding	5.79556049145166	5.72218899367886	5.57065532188271	5.73869381351739	5.53682813917251	5.85033974911695	5.2700104107014	5.79245249461684	-0.143062115901717	0.605567486632201	0.828933020461805
Merged-chr7-44358521-4	chr7	44358430	44358630	+	873.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001034115)	TTS (NM_001034115)	16500.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	4.60197533144708	4.46510951277995	4.5646172226488	3.96214353671168	4.52870456361079	3.92500039522575	4.58060051228405	4.86863162267943	0.23634224078986	0.601612664717313	0.827133488921953
Merged-chr15-84685660-3	chr15	84685553	84685753	+	981.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146061, intron 1 of 7)	intron (NM_146061, intron 1 of 7)	4655.0	NM_146061	109270.0	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding	5.15988810838019	4.96391478353656	4.64467310360093	5.14135857415289	4.0265991727418	4.30120698550264	4.40876767347002	4.51641898251238	-1.52118247887755	8.66888235290599e-05	0.00180053217682374
Merged-chr9-32475204-4	chr9	32475100	32475300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 2 of 8)	intron (NM_008026, intron 2 of 8)	66252.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	7.24669236681887	7.0495031361202	7.19316966681021	7.52016794990421	7.18792859240316	6.95112079658151	7.44434341588688	7.16556135592994	-0.101400509845465	0.629366778910857	0.842141140259345
Merged-chr3-9696765-4	chr3	9696635	9696835	+	848.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 6 of 7)	intron (NM_053182, intron 6 of 7)	-86650.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	4.20399267871802	3.94964454141801	4.33339444960777	4.56191315358295	3.92407608353335	4.13401152018974	4.04455464386455	4.37069318170254	-0.429572966737159	0.327458910608927	0.638965891721937
Merged-chr8-117673690-4	chr8	117673584	117673784	+	897.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357272)	promoter-TSS (NM_001357272)	5.0	NM_001357273	74032.0	Mm.296302	NM_028725	ENSMUSG00000034308	Sdr42e1	4632417N05Rik|AI117603	short chain dehydrogenase/reductase family 42E, member 1	protein-coding	4.78904531262537	4.44155439306582	4.42843963403019	4.72590767748598	4.51026681285891	4.60555784441212	4.58044044067635	5.03852157421479	0.180083730386235	0.629745303275794	0.84238669232566
Merged-chr1-86154115-3	chr1	86154057	86154257	+	848.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310702)	promoter-TSS (NM_001310702)	-623.0	NM_030184	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	3.56144150691278	3.4158498910237	3.23719396953457	3.01147408876427	3.29035152703785	3.41152068599891	3.22560746319302	3.40787828260927	0.0798747749458912	0.88592589998577	0.95718457248159
Merged-chr2-32363049-4	chr2	32362959	32363159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028412)	promoter-TSS (NM_028412)	49.0	NM_001252536	68379.0	Mm.170508	NM_028412	ENSMUSG00000039205	Ciz1	0610038H21Rik|2900056O04Rik|LSFR1|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding	7.15768554219707	7.32667860970441	6.99082025296536	7.05230852758877	7.00306037789971	7.3902866597929	7.077374589485	6.77679536484141	-0.0826302424908859	0.696766726670256	0.877402190847628
Merged-chr10-41870268-3	chr10	41870198	41870398	+	654.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	-17141.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	4.20977663296274	4.02888741242001	3.89782172924825	3.88290977344931	3.91358888745526	3.60223506388313	3.97800166118119	3.99288201499399	-0.334231269515532	0.458191399843527	0.741119194927503
Merged-chr18-25881896-4	chr18	25881791	25881991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127734.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	5.48777369176601	5.53855426439222	6.08926261383701	6.25063222179215	5.8415987252599	5.66762029857216	5.97960112903322	5.62971297508431	-0.180532638360438	0.553868867022151	0.80043514274805
Merged-chr4-62674080-5	chr4	62673871	62674071	+	924.7800289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310706)	promoter-TSS (NM_001310706)	-3.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	3.13099444309844	3.19161572969734	3.31071801402468	3.24385260048149	3.08445732744566	3.42433335862966	3.2414517384156	3.46601099396909	0.310900827768022	0.566996829115888	0.808119800518362
Merged-chr9-108203201-4	chr9	108203105	108203305	+	937.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12822.0	NM_007567	12217.0	Mm.20425	NM_007567	ENSMUSG00000032589	Bsn	-	bassoon	protein-coding	4.47105894980404	5.01955013542186	4.6505492619353	4.44992844676528	5.04667700023096	5.01697745689401	4.85610795802729	4.91087475911976	0.617344024544464	0.0790559903935433	0.304244070129316
Merged-chr5-112298358-4	chr5	112298271	112298471	+	976.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	21680.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	4.88641012559321	4.41546166006517	4.99062401325351	5.15097853773425	4.91323950255473	4.54952935269776	4.82762158033488	5.33157569862454	0.0791656310650341	0.838423001849219	0.938708717941683
Merged-chr5-96851703-3	chr5	96851587	96851787	+	828.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVK26-int|LTR|ERVK	58302.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	3.64884528096057	3.70553964373893	3.54674803506925	3.6630771781034	3.38553541254654	3.76780943598799	3.23773860372301	3.10604226984181	-0.827462403444206	0.131762257170355	0.404175330626236
Merged-chr8-94785889-4	chr8	94785769	94785969	+	899.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13689.0	NM_009142	20312.0	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	4.34795857791198	4.48630912416604	3.79056315196339	3.82562372013898	4.54968585273182	4.51942745796188	4.10583719742575	4.07113734802591	0.46204209263153	0.321684904747768	0.633233286881578
Merged-chr16-38452743-4	chr16	38452628	38452828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007414)	promoter-TSS (NM_007414)	-39.0	NM_007414	11544.0	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	7.95245546596602	7.80276698193716	7.80767779458165	7.98297761497339	7.77023428321077	7.87184940505854	8.32742701561973	7.56418144973796	0.0295634688942866	0.885130735962191	0.956920983840167
Merged-chr7-104258902-1	chr7	104258802	104259002	+	910.6666869999999	f0_c57.idr	intron (NM_030684, intron 4 of 7)	(TTC)n|Simple_repeat|Simple_repeat	14445.0	NM_030684	94094.0	Mm.326945	NM_030684	ENSMUSG00000056144	Trim34a	Trim34|Trim34-1	tripartite motif-containing 34A	protein-coding	2.77330675137352	2.77853702859446	2.77355815381808	2.48763456023933	3.98069343692444	3.34152405477688	3.76541501506513	3.82360135978449	4.81383508043985	2.76845070228078e-11	2.32651183633582e-09
Merged-chr8-94343492-3	chr8	94343410	94343610	+	738.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 13 of 24)	intron (NM_019415, intron 13 of 24)	14302.0	NM_001205311	20497.0	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	3.65741059752874	3.51464541036251	3.65795062329528	3.47545717323169	3.39539440286513	3.37202688086365	3.48829032584127	3.60591002529441	-0.350347605252855	0.48064008862434	0.756060899899244
Merged-chr7-98481202-2	chr7	98481102	98481302	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13020.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	2.79652685376494	3.18577064229592	2.86728333627223	2.87933398526384	2.78688912714785	3.23007501614455	2.98727434461225	3.3243252169369	0.627804910924868	0.316701800920372	0.628678291204261
Merged-chr3-89210316-4	chr3	89210214	89210414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013604, exon 5 of 8)	exon (NM_013604, exon 5 of 8)	4021.0	NM_013604	17827.0	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	7.45419406438038	7.39462311500425	7.90648401843647	7.95866578717598	7.61753010479445	7.33434256405418	7.68367108790108	7.91483369692291	-0.0729029161285617	0.739115745181867	0.897175752194117
Merged-chr12-4197271-4	chr12	4197221	4197421	+	932.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 7 of 21)	MTD|LTR|ERVL-MaLR	36644.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	4.1802545188743	4.05219828100967	4.22479427524874	4.3629928133906	4.20497018109054	4.05686105732913	3.92116070508625	4.2221722437971	-0.278002807748875	0.501609709237822	0.769285475606286
Merged-chr10-122052048-4	chr10	122051940	122052140	+	987.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4725.0	NM_001081037	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	5.726348497631	5.64429044191841	5.16380474427697	5.49348076939419	5.72258726154463	6.1770361763054	5.49154358952968	5.42782665539493	0.357243591965032	0.250059135497814	0.561172779944542
Merged-chr6-134921057-2	chr6	134920954	134921154	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009875, exon 1 of 3)	exon (NM_009875, exon 1 of 3)	653.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	3.69736845307053	3.60994170714509	3.69788142202463	3.37315058721896	3.8826654360038	3.98194249892958	3.73787853301107	4.44592066917408	1.29349256689244	0.00730941831869087	0.0628258491550485
Merged-chr15-97064260-3	chr15	97064161	97064361	+	887.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8305.0	NM_027052	69354.0	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	3.7050729802185	3.60871449529704	3.70560358162961	3.79463218122115	3.41827046160831	3.47178914771527	3.96044838706057	3.59755589648033	-0.255356501217831	0.607491885376821	0.830012990472744
Merged-chr11-35297589-4	chr11	35297501	35297701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011412, intron 4 of 35)	intron (NM_011412, intron 4 of 35)	176145.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	6.00596682988279	5.88828816631795	5.62555468733307	6.31667615658521	6.7477768289211	6.65171348938658	6.79415617442849	6.5805699106477	1.01908763398942	6.57666088629609e-05	0.0014245896081122
Merged-chr11-17160436-4	chr11	17160323	17160523	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 1 of 5)	intron (NM_024459, intron 1 of 5)	1125.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	5.00900282642897	5.11840915632251	4.9016051565992	4.87209160998616	5.24620826423979	4.92018972182628	5.14644781810597	5.19847760353933	0.324526953032576	0.294182126547288	0.606522696834359
Merged-chr7-44554595-3	chr7	44554494	44554694	+	838.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285519)	promoter-TSS (NM_001285519)	-629.0	NM_001285517	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	2.98116999660938	2.95155094232884	2.75361208638736	2.77297331766076	3.485362454116	3.66728631088573	3.22385715896024	3.44900400700272	2.37368725921232	4.65440122934183e-05	0.00106184495225424
Merged-chr6-47176204-4	chr6	47176110	47176310	+	877.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 20 of 23)	intron (NM_001004357, intron 20 of 23)	-68186.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	4.44241340170156	4.095822203287	4.2681749374631	4.52403578165668	4.25615713857281	4.13599534144906	4.33894923310278	4.88258948462987	0.196690317860823	0.644203278901129	0.850114377563949
Merged-chr7-131362812-4	chr7	131362699	131362899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026655)	promoter-TSS (NM_026655)	-73.0	NR_152380	68277.0	Mm.121122	NM_026655	ENSMUSG00000040177	2310057M21Rik	3110040E10Rik|AI429544	RIKEN cDNA 2310057M21 gene	protein-coding	6.71673052506182	6.38687423252744	6.32190507928805	6.76330937574461	6.49537352198227	6.59211678188082	6.81711857819673	6.33661328064492	-0.00330156505468965	0.988843306151747	0.995500582557674
Merged-chr12-75855340-3	chr12	75855247	75855447	+	755.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005510, intron 2 of 115)	intron (NM_001005510, intron 2 of 115)	37029.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	3.214598155144	3.11052936349228	3.33127289065091	3.39255268428167	3.20646062695447	3.05511826725744	3.42346756527093	3.58025514057055	0.208956830559369	0.709830024813346	0.883783017652734
Merged-chr10-95850723-4	chr10	95850625	95850825	+	973.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89938.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	4.93144815966659	4.7778829092392	5.06729587402734	5.21020178808667	4.9861423311413	4.64935182708766	4.94346863107054	5.18560941978574	-0.118613228945689	0.725774469178534	0.890921883682774
Merged-chr13-34792176-4	chr13	34792048	34792248	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52506.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	5.18317687845596	5.29617776921254	5.33099498158951	5.37787539455987	4.97609318168178	5.15754199649413	4.99365968252375	4.78188248001317	-0.61338357288062	0.0441658734745816	0.214351746082589
Merged-chr10-93494262-1	chr10	93494162	93494362	+	615.5	f0_balb.idr	intron (NM_010401, intron 8 of 19)	CT-rich|Low_complexity|Low_complexity	5494.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	2.86783814095708	2.80027472764188	2.75459283685722	2.97271893901893	2.2344027421962	2.35779405544741	2.33433861793262	2.69233167649155	-2.75574238836755	0.00196756848283416	0.0231410371843445
Merged-chr8-70898216-4	chr8	70898117	70898317	+	904.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029751)	promoter-TSS (NM_029751)	-774.0	NM_029751	76808.0	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding	4.29583665177709	4.34227726461473	4.29648943623369	4.339215205528	4.52810601784784	4.42368336938253	4.27760730115274	4.20125786859307	0.121174028353638	0.749584654214119	0.901398626519349
Merged-chr17-14988068-1	chr17	14987968	14988168	+	642.0	f0_balb.idr	intron (NM_001123370, intron 9 of 11)	intron (NM_001123370, intron 9 of 11)	9204.0	NM_001123370	100041574.0	Mm.393767	NM_001123370	ENSMUSG00000036552	9030025P20Rik	D17Zt9e	RIKEN cDNA 9030025P20 gene	protein-coding	3.61770192940978	3.59094640255752	3.75541053757325	3.46182127496781	2.96605829715419	3.1284975707798	3.00767257111919	3.61599084907657	-1.464251825674	0.0162098110726212	0.110697317695299
Merged-chr17-74867028-4	chr17	74866940	74867140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138489.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	6.90261079428229	7.34700453086024	6.84430716901659	7.4799572324643	7.75118547527065	7.49832765119756	7.68966392589632	7.47262320646152	0.562730704086325	0.0107443282889594	0.0832267432016372
Merged-chr5-100588331-4	chr5	100588226	100588426	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16121.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	5.50226820604517	5.37855873551346	5.8145599278528	5.83999247407468	6.15071148505423	5.79142543376258	5.76183350933309	5.37624676082405	0.25312227843593	0.403720766614972	0.700922982752502
Merged-chr4-149665203-4	chr4	149665097	149665297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 2 of 23)	intron (NM_001029837, intron 2 of 23)	-1881.0	NM_001164052	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	5.51572831202365	5.44278702903767	5.11578608085559	5.7818444725803	5.6240550619867	5.39661256001697	5.22729883131326	5.21649768290684	-0.205796883764325	0.513059006586422	0.776141864953986
Merged-chr1-131915878-4	chr1	131915760	131915960	+	961.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145804, intron 1 of 6)	intron (NM_001145804, intron 1 of 6)	5402.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	5.39797272266969	5.46460061786356	5.69444450731656	5.61155156772112	5.21551973759312	4.75970046147938	5.02491611045445	5.04580923044728	-0.941233070487123	0.00218878723179643	0.0250636807580415
Merged-chr13-37855542-3	chr13	37855450	37855650	+	758.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	28157.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.23489824220507	3.16668737614104	3.28985415624155	3.00729661638708	3.21026049170844	3.22943066627607	3.10782713063953	3.05504858972711	-0.0573917739305247	0.918036204945398	0.969796661202263
Merged-chr11-89985411-4	chr11	89985299	89985499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316372, intron 4 of 4)	intron (NM_001316372, intron 4 of 4)	17495.0	NM_008796	18559.0	Mm.5062	NM_008796	ENSMUSG00000020553	Pctp	PC-TP|StarD2	phosphatidylcholine transfer protein	protein-coding	6.79968831651438	6.68799495870752	6.9493570963608	6.52627079996061	6.21959468933316	6.6141605158291	6.11060427318848	6.20236369094394	-0.650246049185643	0.00594700100131227	0.0539169003021788
Merged-chr16-16146821-4	chr16	16146709	16146909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146068)	promoter-TSS (NM_146068)	42.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	7.5752439968355	7.5951004146645	7.59354011946653	7.46889564410899	7.06373746597503	7.41132715895816	7.30517755272923	7.28386897429286	-0.390559688299606	0.0306322461312281	0.169586423533848
Merged-chr5-21045672-4	chr5	21045586	21045786	+	930.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	MTD|LTR|ERVL-MaLR	10225.0	NM_001356591	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	4.15385400179098	4.22013593037234	4.82112004539806	4.70822558327249	4.4467398207239	4.81821638502586	4.24083078094719	4.71664784290179	0.122459277533437	0.771389616228325	0.910379161490028
Merged-chr16-91543307-2	chr16	91543207	91543407	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-3787.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	2.67315394338566	2.72314078987829	2.59956834087528	2.69954652422242	3.21919195364451	2.9180455833211	2.86304059874018	3.09787255538022	1.60647830401875	0.0107566181431349	0.0832769959159245
Merged-chr1-36927790-4	chr1	36927690	36927890	+	982.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 1 of 40)	intron (NM_018872, intron 1 of 40)	11737.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	5.67565724763116	5.8698828387061	5.92378665383681	5.68598056329593	5.55422119709786	5.44944446536341	5.46212254385632	5.19675967662903	-0.608447971359833	0.0266128252796464	0.154849529189892
Merged-chr11-119955658-4	chr11	119955545	119955745	+	926.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	12553.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	4.54064532025802	4.50001248750415	3.87592704329473	4.73481203989595	4.30934627099418	4.28012787001893	4.0859160645454	4.38068532885038	-0.457879612848019	0.295296476801304	0.607360011623083
Merged-chr8-46769538-4	chr8	46769468	46769668	+	944.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	ORR1E|LTR|ERVL-MaLR	29823.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	5.20970507925233	5.22938157885644	5.12213692737252	5.0097045800695	4.68061908466844	4.78100170614966	4.86439716625134	4.72846625580664	-0.754529155099577	0.0190931176364178	0.124038178933946
Merged-chr11-72694145-2	chr11	72694062	72694262	+	654.75	f0_balb.idr|f0_c57.idr	intron (NM_009671, intron 1 of 24)	ORR1C2|LTR|ERVL-MaLR	4160.0	NM_009671	11736.0	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	3.8556323483582	3.61644933800239	3.70104835966196	3.76320765990316	3.90352697309096	3.76260454249505	4.01889705793515	3.80433584425869	0.408409356099977	0.360321926075128	0.665793074685122
Merged-chr7-95791062-4	chr7	95790968	95791168	+	927.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-380176.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	4.58195438512037	4.89636332225334	5.31261417672903	4.97808826511528	4.35157851420907	4.27783175963817	4.56114884931374	3.89770712296768	-1.48563312325732	0.000421446248838742	0.00670948837980156
Merged-chr6-123123321-4	chr6	123123242	123123442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011999)	promoter-TSS (NM_011999)	26.0	NM_001170333	26888.0	Mm.47384	NM_011999	ENSMUSG00000030148	Clec4a2	Clec4a|Clecsf6|DCIR|Dcir1	C-type lectin domain family 4, member a2	protein-coding	6.34459811614748	5.93542738901133	6.82280856127981	6.88549829053066	6.26200268396886	6.26295355071008	6.00834261790485	6.26644969338614	-0.530379712301251	0.0609302659777812	0.260925117909518
Merged-chr14-76429076-4	chr14	76428970	76429170	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207652, intron 1 of 2)	intron (NM_207652, intron 1 of 2)	13249.0	NM_207652	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	6.18640303809798	5.97732304678183	6.29420478990821	6.52205524167113	6.03675814508443	5.42623971598269	5.91177052113861	5.34750096625578	-0.849754343846788	0.0042498215858127	0.0420486586956578
Merged-chr10-95684902-4	chr10	95684794	95684994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-120748.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	6.02176061315677	5.47066228005383	5.55776841517442	5.49694113756901	5.62668897793003	5.86591666344922	5.91214816214838	5.60883382727919	0.184447030576821	0.513441481103349	0.77646733267772
Merged-chr10-117876675-4	chr10	117876563	117876763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30689.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	6.78360067431435	6.78185063738359	6.43300412696291	6.60359366588643	6.78366125651762	6.91832255223522	6.55529959004906	6.89954941837339	0.197178614621052	0.354953052886326	0.661579026385505
Merged-chr1-160882212-3	chr1	160882118	160882318	+	911.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24193.0	NM_001024952	381305.0	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	4.52286231509603	4.14034403686312	4.71584317035079	4.87465169492815	3.38732339432613	3.50983624699502	3.66001977949051	3.60489133191224	-3.21312765041225	4.29913654448245e-09	2.45198732242856e-07
Merged-chr15-64191458-4	chr15	64191365	64191565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	121208.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	5.69289610354549	5.66334376452867	5.27961526510079	5.73755940131577	5.74705569866411	5.62105881456559	5.85134154838514	6.02082902591584	0.329793013732647	0.227730583705162	0.536465946363434
Merged-chr1-134699196-3	chr1	134699097	134699297	+	940.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009307, intron 2 of 9)	MIRc|SINE|MIR	-10103.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	4.12312101967911	4.04668067736217	3.70013517687043	3.59610420890098	3.69524545955974	3.87545991201414	3.44513331428212	3.95017196618331	-0.363179324087811	0.468837979031186	0.747936225502282
Merged-chr10-70287503-4	chr10	70287397	70287597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42221.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	5.39953622962528	5.15216789757936	5.2735534308475	5.71167567946644	5.60214360204071	5.54640352820189	5.82277032256678	5.76132188372244	0.445061592754177	0.133369983108165	0.406663040937973
Merged-chr9-65827757-4	chr9	65827678	65827878	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172536)	promoter-TSS (NM_172536)	-214.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	5.9260176644292	5.79249289500921	5.69956553991147	5.44359871047296	5.92654941818975	6.0791185067433	5.23138331342535	5.14376326633001	-0.0907225655301588	0.788350462141897	0.91809533353005
Merged-chr1-39504411-3	chr1	39504312	39504512	+	694.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-25657.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	2.9071539874444	3.4739938835617	3.04854623256997	3.24599167451064	3.2637803592122	3.40585914129775	3.3852546021604	3.17478327980233	0.428010805744779	0.461999321497514	0.743525587973039
Merged-chr12-55302686-4	chr12	55302602	55302802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025373)	promoter-TSS (NM_025373)	65.0	NM_025373	66132.0	Mm.383213	NM_025373	ENSMUSG00000021023	1110008L16Rik	Kiaa0391|Mrpp3|mKIAA0391	RIKEN cDNA 1110008L16 gene	protein-coding	6.73265290290923	6.61368328370504	6.7338384357613	6.65327625770669	6.3073618545797	6.48193025990016	6.71337983559063	6.23932046255028	-0.345964912834031	0.115122975283421	0.375422103710937
Merged-chr4-141998825-4	chr4	141998723	141998923	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 2 of 31)	intron (NM_177868, intron 2 of 31)	12828.0	NM_177868	329977.0	Mm.252019	NM_028429	ENSMUSG00000051435	Fhad1	2900090M10Rik|B230311F11	forkhead-associated (FHA) phosphopeptide binding domain 1	protein-coding	4.76024172299937	4.8577501614695	5.15115728242878	5.19028316858571	4.68438926853356	5.01762433733008	5.26853927058986	5.1475886624989	0.0487286440593304	0.887791159436662	0.957920308900409
Merged-chr11-71285358-3	chr11	71285255	71285455	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027858)	promoter-TSS (NR_027858)	-123.0	NR_027858	627984.0	Mm.390378	NM_001039234	ENSMUSG00000092528	Nlrp1c-ps	Nalp1c|Nlrp1c	NLR family, pyrin domain containing 1C, pseudogene	pseudo	3.14498065881727	3.04666303932563	3.14533906023819	2.41854954674665	4.5706861409004	4.48927518834075	4.56740054310103	4.76689382572516	8.43374627782316	7.48908931505026e-19	2.2027516047767e-16
Merged-chr9-16233749-4	chr9	16233626	16233826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	MTC|LTR|ERVL-MaLR	144505.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	6.0196528168176	5.71575641434063	5.99925395142821	6.26828423574554	6.1908530115855	5.68345935547191	6.03156972632173	6.05823679782675	-0.0250086129348502	0.925689853154332	0.972598796352142
Merged-chr13-25793218-4	chr13	25793109	25793309	+	953.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	173107.0	NR_045062	100503530.0	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	-	predicted gene 11351	ncRNA	4.60669270864443	4.63650511607065	5.0203767044633	5.11358496987083	4.94427912935697	4.90896968831347	4.99580112158782	4.80855259541346	0.0721749437728651	0.83507862722652	0.937183298750505
Merged-chr9-111053468-3	chr9	111053464	111053664	+	693.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	3680.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	3.53330844159865	3.99481832688764	3.48072497270005	3.55148190064518	3.06854202269748	3.42235180844684	3.09845754983628	3.17594463718319	-1.69861322179789	0.00340216833496114	0.035239077403114
Merged-chr2-6715883-4	chr2	6715796	6715996	+	987.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	5766.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	4.772659847422	4.28539079013195	5.11638177115086	5.47814191215666	4.89547136950231	4.49455915547579	5.09078085608734	4.91853476212164	-0.259064385830085	0.546461669436125	0.796392276341475
Merged-chr12-80260492-4	chr12	80260388	80260588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346669)	promoter-TSS (NM_001346669)	-107.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	7.80956412334	7.88661512740504	7.80335768696432	7.83223964961878	7.54625542775063	7.76758650247974	7.49827682235299	7.52079608790434	-0.327282064481534	0.0499738888512825	0.231702151807285
Merged-chr11-79146492-4	chr11	79146381	79146581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013571)	promoter-TSS (NM_013571)	-8.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	7.21928157841456	7.13692116339547	6.891374435079	6.73517253293631	7.02716997437247	6.94136922624635	6.77342608222273	6.75934427244589	-0.159085926198547	0.460548108896983	0.742687499720882
Merged-chr14-60784570-4	chr14	60784482	60784682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040642)	promoter-TSS (NR_040642)	16.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	6.22913387338254	6.25605784337383	5.74004510749244	6.35348380757424	5.79650579895895	6.22757976734326	5.81472317851575	6.20718497103856	-0.244330449152738	0.366263392070282	0.670807482095786
Merged-chr5-64634972-4	chr5	64634885	64635085	+	851.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	-24286.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	3.69160462145824	3.72728031757971	4.47530446912496	4.1665961425361	3.90300177436125	4.09927749969104	4.23016720337169	4.16214189896968	0.110690314014347	0.816461226402178	0.929362464563434
Merged-chr4-106910337-4	chr4	106910228	106910428	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1142.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	5.08553707280067	5.47863503348578	5.04948464549505	5.20996560434019	5.7667264048822	5.33430227503379	5.65616818329685	5.25299828976377	0.548509263436146	0.074193887180468	0.293456695688961
Merged-chr2-73892143-4	chr2	73892045	73892245	+	959.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025093, intron 1 of 14)	CpG	494.0	NM_001284371	11909.0	Mm.209903	NM_009715	ENSMUSG00000027104	Atf2	Atf-2|CRE-BP|Creb2|D130078H02Rik|D18875|Tg(Gzma-Klra1)7Wum|mXBP	activating transcription factor 2	protein-coding	3.9687520839859	4.04600737893429	4.34900705930651	4.00374070431559	4.38605415756014	3.91628127842861	4.36881908356017	4.66964276936822	0.663878547256532	0.121227712540209	0.385509866903432
Merged-chr10-80389363-4	chr10	80389200	80389400	+	829.391663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-1649.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	3.93819509042333	3.88709504122214	3.58982569975783	3.94815494255416	3.6179645220191	3.58497234744343	3.6318236596516	3.58796365918599	-0.764348974386445	0.10684806044059	0.360442563701457
Merged-chr1-14740210-2	chr1	14740114	14740314	+	774.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	15752.0	NM_001360810	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	3.74748715785235	3.69181985431869	3.25811122662004	3.80943564831156	3.55227651905972	3.70244261620148	3.96289685004707	4.02055879309161	0.498415040270068	0.336341519764722	0.646375426192914
Merged-chr13-8780639-4	chr13	8780550	8780750	+	686.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	90394.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	3.62160873372303	3.44006129964155	3.56486457812275	3.60256206193502	3.68119518029923	4.08829484572216	4.02809942082166	3.50328219592382	0.843075355808142	0.0856320718006109	0.318707445413073
Merged-chr4-93551302-4	chr4	93551210	93551410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-215799.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	4.78701350412106	4.26038607951559	5.23482520237892	5.26206850714133	4.97302058076023	4.23312372900999	4.90830275235293	5.02756473953165	-0.253716429536807	0.56769284376822	0.808331754798167
Merged-chr13-54688212-4	chr13	54688092	54688292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146025)	promoter-TSS (NM_001146025)	8.0	NM_001146027	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	7.99842699432246	8.20918749943018	7.65776561564334	7.80954300262457	8.08561613895708	8.19756942205686	8.18441499266005	8.04762366660165	0.25075316719111	0.167117029685054	0.458584488837368
Merged-chr13-99186433-4	chr13	99186352	99186552	+	749.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	1629.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	3.3725916429469	3.14840827481857	3.00333474386883	3.17624176167848	3.31675924751376	3.54122879869986	3.18967588610858	3.42361565955094	0.692886488804334	0.202521856048613	0.504967358800722
Merged-chr7-35119767-2	chr7	35119667	35119867	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001287515, exon 1 of 1)	exon (NM_001287515, exon 1 of 1)	474.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	5.72665759180983	5.60567837063027	5.72766545014445	5.67991805115538	5.18175007641705	5.6095754590827	5.40572845362617	5.92194464276351	-0.231411127468999	0.43024637527585	0.720881944017695
Merged-chr13-55063480-3	chr13	55063381	55063581	+	580.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_121592, intron 6 of 13)	intron (NR_121592, intron 6 of 13)	30925.0	NM_001359757	20184.0	Mm.259301	NM_011307	ENSMUSG00000025878	Uimc1	9430016E08Rik|D330018D10Rik|D630032M02Rik|RIP110|Rxrip110	ubiquitin interaction motif containing 1	protein-coding	3.61320202028517	3.48120258446818	3.71494298234823	4.0116629657841	3.51031483464331	3.43207011142681	3.54619491000271	3.50194960484924	-0.758349863102627	0.137760895502238	0.412851426670771
Merged-chr5-37971903-3	chr5	37971806	37972006	+	745.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-67324.0	NM_001289536	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	3.57364948219599	3.70513700625836	3.62299383059976	3.48231989296908	2.93277788099036	3.21154186739241	3.45637876438727	3.23318168757203	-1.39882604038724	0.0145304433747266	0.102552930439315
Merged-chr12-86950780-4	chr12	86950679	86950879	+	996.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173735, intron 1 of 3)	intron (NM_173735, intron 1 of 3)	3436.0	NM_001289432	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	5.68189157597466	5.60224047723896	5.50300075072751	6.05250195520709	5.45086034366869	5.26268856226277	5.33025600595795	5.1526206071371	-0.754439593941039	0.0114584550121063	0.0869523463980016
Merged-chr10-7725980-4	chr10	7725875	7726075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011835)	promoter-TSS (NM_011835)	-25.0	NM_011835	23924.0	Mm.28127	NM_011835	ENSMUSG00000019794	Katna1	-	katanin p60 (ATPase-containing) subunit A1	protein-coding	8.51785213466052	8.77516682903643	8.31248405358689	8.04897210133399	8.55913977121951	8.60317050540751	8.25092535268362	8.14527019850196	-0.0402404220934396	0.847170313633468	0.9422142432572
Merged-chr2-181334231-3	chr2	181334132	181334332	+	851.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001882, intron 8 of 33)	B3|SINE|B2	13426.0	NR_030710	269400.0	Mm.11333	NM_001001882	ENSMUSG00000038685	Rtel1	AI451565|AW540478|Rtel	regulator of telomere elongation helicase 1	protein-coding	3.38779924403083	3.876682369512	3.5747584272168	3.44068232926591	3.84215662317117	3.90921280040648	3.86619388882397	3.73620156314479	0.782800125443876	0.102143107409511	0.35083936892832
Merged-chr1-44070365-4	chr1	44070262	44070462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32079.0	NM_029368	75623.0	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	5.89353834637666	5.61644505100611	6.06842682287146	6.44669304219919	5.73192834529381	5.84380813895733	6.01698618436111	6.04363498121083	-0.237733489069263	0.411954520976946	0.70726552639751
Merged-chr11-35297984-2	chr11	35297884	35298084	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011412, intron 4 of 35)	intron (NM_011412, intron 4 of 35)	176528.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	4.05794205600263	3.80323322930823	4.05857641819716	3.30427213820514	4.42326192815854	4.03617611989866	3.73097121386589	4.26891328548359	0.82642461478433	0.108039273837475	0.362639228165503
Merged-chr8-13624968-3	chr8	13624861	13625061	+	969.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 2 of 23)	intron (NM_009025, intron 2 of 23)	52626.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	4.19141184411238	3.76297569119591	4.31076933306323	4.56905013724185	3.59919263632544	3.98581873808852	3.67764857458187	3.62730897792729	-1.46698534602423	0.00314684417892594	0.0331590261749474
Merged-chr14-25412236-6	chr14	25412069	25412269	+	770.527771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47016.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	3.3874309113858	4.19146914855523	3.6115665339355	2.82192980256346	3.37212497312896	3.44473364532903	3.18140593304363	3.55692448979986	-0.669373872860101	0.309605122137538	0.621833440934041
Merged-chr19-47004267-4	chr19	47004144	47004344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164363, intron 1 of 17)	intron (NM_001164363, intron 1 of 17)	-10454.0	NM_146100	226180.0	Mm.276251	NM_146100	ENSMUSG00000034336	Ina	AV028420|NF-66|NF66	internexin neuronal intermediate filament protein, alpha	protein-coding	5.38545625842331	5.31313201244638	5.32733591703607	5.49778752319954	5.46314223801789	5.47120621198439	5.10715209737418	5.4111254972805	-0.0310261954199721	0.913677380513078	0.967628429778146
Merged-chr5-65086712-4	chr5	65086593	65086793	+	889.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-20875.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	4.71888012572515	4.31806152817113	5.10084746874281	4.96760816694123	4.99637990867301	4.68101544422113	5.01465911909423	5.03607854363876	0.256634162795333	0.487949097311414	0.761126159857708
Merged-chr4-141737001-4	chr4	141736859	141737059	+	997.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-9716.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	5.27690176983228	5.10327315765297	4.53676226743355	5.28537466143376	5.02850866118326	4.4072464465954	4.98641739011276	4.75258723152713	-0.525135555527668	0.171904584114335	0.465135304640845
Merged-chr9-44655310-3	chr9	44655239	44655439	+	845.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17894.0	NM_001277851	58866.0	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	3.69910582477577	3.75352974674285	3.69964927538535	3.91932191951255	3.43429946920954	3.34703581987628	3.35607204086138	3.42723821964564	-1.28834324060746	0.0108203767132008	0.0835721020919862
Merged-chr7-143829579-4	chr7	143829453	143829653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007856, intron 1 of 8)	intron (NM_007856, intron 1 of 8)	6386.0	NM_007856	13360.0	Mm.249342	NM_007856	ENSMUSG00000058454	Dhcr7	AA409147	7-dehydrocholesterol reductase	protein-coding	6.14426743114699	5.99025972421108	5.93896800418106	5.74944670781948	5.95461638909571	5.97307688185966	5.84000069096857	6.04207623106188	0.00997424829650483	0.96793806809308	0.98865348920078
Merged-chr9-21221136-2	chr9	21221036	21221236	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18196.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	4.33362016804006	4.30940306092909	4.46174084456188	4.46652198555235	4.66562752220826	4.31896872758243	4.27025206240642	4.3754649171958	0.0716643265998977	0.851149673830312	0.943894442930937
Merged-chr7-97077162-4	chr7	97077076	97077276	+	988.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4575.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	5.20767232359133	5.06006394148771	5.68549992096338	6.15212194118696	5.26268520901245	4.40607024172785	5.76715495411186	5.63378417503266	-0.398921235326708	0.60309039337595	0.82791756687509
Merged-chr4-95770721-4	chr4	95770623	95770823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 8 of 10)	intron (NM_029347, intron 8 of 10)	191302.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	6.22219285694842	6.19389925156291	6.3352813928361	6.22247655838213	6.46049618483981	6.47430837622427	6.32047851257556	5.91129373306714	0.111190395847793	0.641205318467884	0.848625403955452
Merged-chr15-97379978-4	chr15	97379854	97380054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 5 of 5)	intron (NM_172293, intron 5 of 5)	-132667.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	5.71832977410391	5.75232186260948	5.66970664146013	5.36374969570786	5.58294008213469	5.8186189812049	5.80563063292097	5.44533808677855	0.0824175092694539	0.767488407780786	0.909027746453384
Merged-chr4-126199843-3	chr4	126199733	126199933	+	760.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356455, intron 1 of 11)	intron (NM_001356455, intron 1 of 11)	1174.0	NM_001356456	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	2.68267852664996	2.85855316043925	2.95630537654704	2.7858845056221	3.05955514935191	3.00196014137649	3.00519039488399	3.27981748202592	1.14575750312394	0.0544592723241344	0.243569936553447
Merged-chr4-133519261-5	chr4	133519097	133519297	+	724.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083916, intron 1 of 3)	CpG	234.0	NM_133707	69073.0	Mm.299081	NM_133707	ENSMUSG00000037600	Kdf1	1810019J16Rik	keratinocyte differentiation factor 1	protein-coding	3.8756410914518	3.71681397194269	3.48407059790413	3.17557201525637	3.80333071965289	4.2253535768255	3.81012264826554	3.96713952227768	1.11978259017581	0.0292065031860086	0.164319877689011
Merged-chr2-164074080-4	chr2	164073979	164074179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021420)	promoter-TSS (NM_021420)	-99.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	7.39543230760767	7.71515417605809	7.42630543982038	7.41499417455641	7.41491740250779	7.48078282190455	7.39920642216497	7.48760601004956	-0.0656759949656449	0.713593930581641	0.885457948749053
Merged-chr19-61052162-3	chr19	61052047	61052247	+	909.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 4 of 15)	intron (NM_018869, intron 4 of 15)	88693.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	3.25445871317641	3.49080317328507	3.58960278992599	3.66258578442306	3.08417511479038	3.43021771684677	3.52476784434531	3.37452173669105	-0.546331929109154	0.317189502628135	0.629008590755612
Merged-chr12-85670296-4	chr12	85670197	85670397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16423.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	5.47977509771606	5.8342853915282	5.91022788028998	5.44490684103532	6.06626333783619	5.71629827627186	5.791829771929	5.50657556711188	0.205326394710372	0.476987886258773	0.753256289929963
Merged-chr15-97162477-4	chr15	97162352	97162552	+	995.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155278, intron 2 of 3)	intron (NR_155278, intron 2 of 3)	4792.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	5.80395032494751	5.15315875143185	5.22571897334675	5.63830983848928	5.14146277257889	5.26827881244463	4.95609910702853	5.12248025054792	-0.660649261040573	0.0397058567832949	0.200825920555542
Merged-chr19-36410281-3	chr19	36410199	36410399	+	790.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029508, intron 1 of 8)	CpG	31232.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	3.66334811452092	3.52870096045365	3.55343792385352	3.73982833130746	3.61376916571341	3.88485232956201	3.84255360254879	3.55158759907914	0.288179274403857	0.545574819666373	0.795947244031089
Merged-chr17-8144104-4	chr17	8144043	8144243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026611, intron 2 of 8)	intron (NM_026611, intron 2 of 8)	3645.0	NM_001083938	100037283.0	Mm.426736	NM_001083938	ENSMUSG00000095687	Rnaset2a	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2A	protein-coding	6.37175339720774	6.33067603421817	6.33858848118227	6.24539693741561	6.03934352317932	6.10907541180191	6.13987374076711	5.8532866042537	-0.425357239382035	0.0626985195561401	0.265313140750176
Merged-chr1-182953859-4	chr1	182953750	182953950	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016928)	promoter-TSS (NM_016928)	-938.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	5.23641583894006	5.44740668707963	5.59339639694412	5.74250823489675	5.71360149481315	5.15647574135309	5.48558544916907	5.8456867295175	0.0873040564398379	0.776580557064012	0.912932991254018
Merged-chr3-79154190-3	chr3	79154090	79154290	+	962.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-8315.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	4.38745118661308	3.94647437622266	3.72481639627996	4.23799519343058	3.61250359420827	3.84529040401192	3.65230605235919	3.98380663500907	-0.914727110623643	0.057624929918004	0.25196172287202
Merged-chr3-68691363-3	chr3	68691282	68691482	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008351)	promoter-TSS (NM_008351)	-42.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	3.15440498707519	2.98512113909979	2.99166333144426	2.97980907114252	2.94351041223685	2.68995888080371	2.98039916803875	2.662259875839	-0.869241416802088	0.175827180591266	0.470658653309832
Merged-chr1-170992767-3	chr1	170992634	170992834	+	863.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-16663.0	NM_001077189	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	3.37158662825543	3.33656158021909	3.20188695542968	3.25625910537315	3.1279731724825	3.31314936155891	3.24903333845536	3.31599327877843	-0.158402730807895	0.765377768430826	0.908220654138999
Merged-chr15-99074961-4	chr15	99074841	99075041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030159)	promoter-TSS (NM_030159)	-32.0	NM_001162506	78733.0	Mm.124905	NM_030159	ENSMUSG00000032783	Troap	AW476063|E130301L11Rik|tastin	trophinin associated protein	protein-coding	7.74201007250029	8.13250285181531	7.67713228820113	7.76884174823159	7.74764948814039	7.93674782782876	7.83525612925563	7.67189567417726	-0.057681836604766	0.753411342964805	0.902798885097597
Merged-chr6-5339484-3	chr6	5339365	5339565	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-41092.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	4.64384165804838	4.1895297813774	4.46265319882206	2.8552342374415	7.61276723637434	7.45159695026871	7.61713161832502	7.26447175638459	6.23800670446472	2.24247321034877e-21	9.01790964064491e-19
Merged-chr12-52541492-3	chr12	52541384	52541584	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009706, intron 1 of 5)	intron (NM_009706, intron 1 of 5)	25407.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	3.73017527083403	3.74400489169014	3.61075756280886	4.19763659134054	4.45540650970728	3.79092929076806	3.97268135225595	3.93976736901069	0.577850501279428	0.256372723738204	0.567971430886788
Merged-chr3-117438932-4	chr3	117438814	117439014	+	813.354187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78038.0	NM_177664	229791.0	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	4.15077268050565	3.63638242159426	3.77234484893478	3.85685062084411	3.92091730944912	4.05011487899144	3.9586627677027	3.92562886000723	0.273578643476961	0.538863722823976	0.791836762255368
Merged-chr15-50761760-4	chr15	50761660	50761860	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	127289.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	4.61625076341317	4.45884227010243	4.85570066129931	4.43393733173017	5.08836792432063	5.03040566353175	5.48902440292611	4.61400921294527	1.01534177351668	0.00596883646619377	0.0540254082944057
Merged-chr4-129082910-4	chr4	129082816	129083016	+	900.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 8 of 8)	intron (NM_029219, intron 8 of 8)	-22614.0	NM_025452	66260.0	Mm.25295	NM_025452	ENSMUSG00000028786	Tmem54	1810017F10Rik|AI507302	transmembrane protein 54	protein-coding	4.18794284891869	4.55299426212723	4.23977440295093	4.31242059275272	4.79375942582015	4.51281880690405	4.9286681258756	4.33401612900925	0.750786058094056	0.0528575880659039	0.239808162466886
Merged-chr5-44049532-4	chr5	44049436	44049636	+	992.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163578, intron 3 of 22)	intron (NM_001163578, intron 3 of 22)	45232.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	4.89382267805688	4.97382785614794	5.00921542118679	5.08245688879448	5.46203592630453	5.44552386212474	5.24650786636813	5.43581922696601	0.73711660750463	0.0118773124638949	0.0892476959255303
Merged-chr11-115119680-4	chr11	115119580	115119780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169153, intron 4 of 6)	intron (NM_001169153, intron 4 of 6)	14312.0	NM_001347648	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	6.53454622445611	6.69545909829749	6.62916149769528	6.63740069400163	6.63795351863447	6.15555937258167	6.17301448509442	6.57860270363561	-0.305336041080784	0.185388406981023	0.483316175748545
Merged-chr6-29528755-2	chr6	29528655	29528855	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252382)	promoter-TSS (NM_001252382)	-527.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	4.02650570583465	3.8235996236677	3.97708624910874	3.79048733682649	4.08347714254121	4.37904707620499	4.19043087566281	4.20705958602971	0.836987520783825	0.0425671280823861	0.209581528184532
Merged-chr10-115314507-4	chr10	115314414	115314614	+	833.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024454, intron 1 of 6)	intron (NM_024454, intron 1 of 6)	1077.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	3.44418776453806	3.71222575818899	3.95820386219797	3.99156293977018	3.82719523154577	3.98163974037358	3.89340526082022	4.24884124409356	0.524198296622362	0.27844214425365	0.590625310604573
Merged-chr17-87108078-2	chr17	87107978	87108178	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019654, intron 1 of 2)	CpG	399.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	3.37291344245517	3.50385506454551	3.24493267816421	3.20644176620502	3.63944277355372	3.60733066401249	3.72711596999696	3.74167949490201	1.16017856777581	0.0183632226829338	0.120980731890832
Merged-chr17-5522171-3	chr17	5522069	5522269	+	878.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	GA-rich|Low_complexity|Low_complexity	29569.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	3.69159142145459	3.40729574095979	3.73905498973036	3.35290501730901	3.37804023951578	3.76252009590342	3.41474102646103	3.2375795196629	-0.301314490619647	0.573606870443525	0.811888602285473
Merged-chr3-145743227-3	chr3	145743128	145743328	+	970.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15464.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	3.90476867169157	4.18753399909814	4.22883567241016	4.3806611952478	3.772472333107	3.85726323372799	3.83661431101573	4.05166092337432	-0.866978281722805	0.049818669147355	0.231133036842627
Merged-chr6-54934575-3	chr6	54934434	54934634	+	804.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 7 of 11)	intron (NM_001171007, intron 7 of 11)	37127.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	3.29486648936571	3.35753200410334	3.17866282167394	3.21892421849997	3.03438111046724	3.29027622822859	3.10583191279417	3.4503895162179	-0.141508284777076	0.798253708528182	0.921955533143952
Merged-chr4-87870741-4	chr4	87870655	87870855	+	916.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027326, intron 4 of 10)	intron (NM_027326, intron 4 of 10)	-64432.0	NM_029931	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	4.23906710566903	4.20181313140948	4.13479843574498	4.6115570491847	4.6980819923206	4.20675472006865	5.01373791671622	4.76736686127172	0.828817016772107	0.0504615361750114	0.233062116369474
Merged-chr5-5719456-3	chr5	5719345	5719545	+	932.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-24877.0	NM_028734	74051.0	Mm.274956	NM_028734	ENSMUSG00000015653	Steap2	4921538B17Rik|AI930049|AW045895|IPCA-1|IPCA1|PCANAP1|STAMP1|STMP	six transmembrane epithelial antigen of prostate 2	protein-coding	3.67858620421397	3.90917543836739	4.25090969650798	4.8223912210503	3.33580259772854	3.60930781603305	3.40663756163391	3.89628916904511	-1.92728016483549	0.000900832059040326	0.0123927957345248
Merged-chr14-76171479-4	chr14	76171392	76171592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60601.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	5.54481009277124	5.73444651640929	5.51801305226122	5.73525597396413	5.72006259550106	5.54628022143243	5.64738614564219	5.36571911212611	-0.106119448981924	0.694745261519578	0.876091214911152
Merged-chr17-5218188-2	chr17	5218088	5218288	+	858.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	200579.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	2.65452656033279	2.56440088465009	2.82940918099115	2.57334487109299	2.29635109431353	2.55755853086103	2.4464063647035	2.71423943663272	-0.792768951709993	0.271707611643804	0.583281843628624
Merged-chr12-102443788-4	chr12	102443648	102443848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3935.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.71919382090983	5.7265256163529	5.94451568863876	6.18671298423032	5.85003214255535	6.16514825876058	6.21564755939803	6.4108367645524	0.376712187231096	0.166123487490412	0.457180007581197
Merged-chr5-31614055-4	chr5	31613948	31614148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025796)	promoter-TSS (NM_025796)	97.0	NM_025796	66845.0	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	5.86604398664657	6.01551988568584	5.97499573433031	5.50759123588121	5.57850010084723	5.62161766236822	5.85933346415299	5.76941983014189	-0.216464704573329	0.433814025621534	0.723256357491443
Merged-chr11-100757744-4	chr11	100757659	100757859	+	967.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081194, exon 2 of 17)	exon (NM_001081194, exon 2 of 17)	2019.0	NM_001081194	380728.0	Mm.297539	NM_001081194	ENSMUSG00000035355	Kcnh4	BEC2	potassium voltage-gated channel, subfamily H (eag-related), member 4	protein-coding	6.03443473336595	6.42697566454193	5.76307463193544	4.77897306562503	6.65636877352537	6.77779063775865	6.66379735620143	6.13810429624812	1.02701938101676	0.0525326726465005	0.238836427331711
Merged-chr2-48767995-4	chr2	48767884	48768084	+	972.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-46125.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	5.14698701874406	4.53643766280941	5.7998419178556	5.43397453684157	4.53453278192716	4.78975572950961	5.24213147266301	5.0107522419978	-0.733966223616873	0.0770378508731582	0.300066512024141
Merged-chr6-51858037-4	chr6	51857948	51858148	+	972.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	154501.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	5.02811667908462	4.83251806951598	5.02896439551296	4.75855271102246	5.13363664077307	5.02750743816939	4.79198138909529	5.05796728507419	0.220239544333055	0.494547022976595	0.765213741760164
Merged-chr4-134273558-1	chr4	134273458	134273658	+	865.0	f0_balb.idr	Intergenic	Intergenic	13695.0	NM_001163794	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	3.1202119007239	2.94964591455378	3.01281150553987	3.27782564798727	2.56828157984431	2.64872041854119	2.5390569455691	2.89348680503783	-2.19860769836145	0.00248997389253112	0.0276711712250542
Merged-chr10-81519759-4	chr10	81519645	81519845	+	943.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010304, intron 1 of 6)	intron (NM_010304, intron 1 of 6)	4480.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	4.60858445065321	4.48491984651678	4.60931658742201	4.86097991263182	4.76601853877405	4.74163974538914	4.50583995192526	4.64594558889892	0.0158390695890997	0.964590078582439	0.987450131194999
Merged-chr15-97964135-4	chr15	97964019	97964219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252153)	promoter-TSS (NM_001252153)	-110.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	6.73298338998403	7.07073262069503	6.2973172044292	6.45408783572464	7.00361281617893	7.05010850764999	6.71445897827571	6.98259435445804	0.387194306050042	0.109743149712363	0.365822491142991
Merged-chr7-138845746-4	chr7	138845611	138845811	+	951.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026391)	promoter-TSS (NM_026391)	556.0	NM_001045483	69546.0	Mm.31598	NM_027115	ENSMUSG00000041775	Mapk1ip1	2310009E07Rik|AU043776|MISS	mitogen-activated protein kinase 1 interacting protein 1	protein-coding	4.6841278182365	4.54539212713223	4.39555785347517	4.34078987712307	4.71309774165818	4.52573338874801	4.73382798433285	4.71818517577758	0.42440956631321	0.23194391551437	0.541542911150474
Merged-chr2-129586292-4	chr2	129586195	129586395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6544.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	7.78157702430222	7.93902897983443	7.94464566603311	8.12419501474557	7.54412089845631	7.80168545581892	7.94703585647237	7.68815495957687	-0.275576506934739	0.127508345690272	0.397369375564266
Merged-chr11-120660667-5	chr11	120660505	120660705	+	872.179993	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175263, intron 1 of 11)	CpG-2953	232.0	NM_175263	77583.0	Mm.32839	NM_175263	ENSMUSG00000042988	Notum	5730593N15Rik	notum palmitoleoyl-protein carboxylesterase	protein-coding	3.35171910194888	3.31703454629588	3.40473309183266	3.07862440003758	3.07159342219879	3.0922512382146	3.28444377340975	3.35027735328352	-0.31070584681664	0.578175805701835	0.81458069221668
Merged-chr11-73018925-4	chr11	73018821	73019021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018883)	promoter-TSS (NM_018883)	-80.0	NR_152202	100043309.0	Mm.340872	NR_152202	ENSMUSG00000086943	4732414G09Rik	-	RIKEN cDNA 4732414G09 gene	ncRNA	7.7231869617833	7.52616874582879	7.60889222822883	7.7829415664714	7.76275542139785	7.4958000880218	7.75565009681917	7.19884905621762	-0.116103618949082	0.557821809689338	0.802877090200368
Merged-chr10-94521923-4	chr10	94521835	94522035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	7078.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	6.77340458891917	6.59598922314962	6.30669483292395	6.53776706055852	6.40193138316118	6.44510713207548	6.1766825844527	5.93205412899072	-0.450513772579305	0.0618737815745119	0.263183184335241
Merged-chr1-74392205-4	chr1	74392127	74392327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153088, intron 1 of 6)	CpG	618.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	6.12577460733376	5.96549953692448	6.29938393158344	6.00485567316522	5.95148374354042	6.10469328745149	6.53811566453513	6.34743541183516	0.231954376592714	0.360589611702874	0.665919212407671
Merged-chr5-19891890-4	chr5	19891794	19891994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 2 of 22)	L2a|LINE|L2	-15624.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	7.38390387990201	7.4252903401769	7.62566152212365	7.74201905280815	7.63471365945171	7.35245359070062	7.76009665762251	7.38007131425717	-0.0173822787391459	0.929062235822003	0.974317157505369
Merged-chr2-124707556-3	chr2	124707465	124707665	+	891.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53984.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	3.24516925527182	3.13520302701677	3.24558486990067	3.49276244085513	3.11405972268007	3.41454519888522	3.17529565073428	3.18490993877796	-0.280483948806276	0.615017387595068	0.834263766730115
Merged-chr17-34001211-4	chr17	34001082	34001282	+	872.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347346)	promoter-TSS (NM_001347346)	-835.0	NM_001347346	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	4.1616685015861	3.94140477404757	3.62994280759374	3.39210758333609	4.91301674023559	4.71594317309157	4.09383377761108	4.74282242615969	2.10703438802663	9.88449466533078e-06	0.000272173479993648
Merged-chr1-125468143-4	chr1	125468015	125468215	+	932.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32388.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	4.55388102183401	4.47121642108815	4.27584311066682	4.77023835034274	4.92966890601736	4.95363948339304	4.448187533487	4.6326458426994	0.458282657120364	0.23092633425703	0.540396396919272
Merged-chr4-53270125-4	chr4	53269964	53270164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033139, intron 1 of 1)	RMER1B|Other|Other	168.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	7.20487639378971	6.56783963884578	7.24653917575669	7.09797797624406	6.78122744470089	6.49695663196842	6.61124513601615	6.79162033907945	-0.524339537985059	0.0237806296359905	0.143484058392826
Merged-chr11-119268466-4	chr11	119268345	119268545	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008064, intron 1 of 19)	intron (NM_008064, intron 1 of 19)	482.0	NM_008064	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	4.91350594523321	4.82582371850318	4.87722415093475	5.27269192719167	5.2371558927171	4.89506623889454	4.9266898153776	5.08162444940594	0.0869549208576455	0.795906970489613	0.920988786781118
Merged-chr9-51009172-4	chr9	51009079	51009279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178710)	promoter-TSS (NM_178710)	-106.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	8.60901676070338	8.74981049034655	8.46057488619789	8.51526409373677	8.67409797589764	8.63320505954893	8.77578332857945	8.31398196495615	0.0303656765810822	0.857085589405892	0.94616653253742
Merged-chr19-32758264-5	chr19	32758201	32758401	+	905.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008960, exon 1 of 9)	5' UTR (NM_008960, exon 1 of 9)	724.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	4.24979751171822	4.23323873899904	3.98581956414295	3.69294950860248	3.86813863193627	3.89448847527305	4.06218430681874	3.98344062604574	-0.259072236009682	0.570686094370669	0.81018968611422
Merged-chr4-135294159-3	chr4	135294059	135294259	+	675.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21399.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	3.6214289684773	4.17519972541491	4.03330628271468	3.62091678241365	3.83891108355822	3.91249581026546	3.72285819128136	3.93968252520535	-0.068727704696797	0.885573439794284	0.957045685546015
Merged-chr7-46993279-4	chr7	46993142	46993342	+	867.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175318, exon 6 of 6)	3' UTR (NM_175318, exon 6 of 6)	15172.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	4.1758357461682	4.18230741576292	4.74066123695291	4.95093165687497	4.05211406673224	4.40267644620459	4.34479139899172	4.17397857395475	-0.764425260553878	0.0840725046065694	0.31533945330616
Merged-chr6-91117006-4	chr6	91116918	91117118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018815)	promoter-TSS (NM_018815)	-192.0	NM_018815	54563.0	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	6.64261596257627	6.75288631799376	7.06229953396099	6.99502996852442	6.3267255242984	6.40370763385444	6.53008323651577	6.82614883750717	-0.499315676102824	0.0291012127067299	0.163990880777019
Merged-chr3-9849979-4	chr3	9849878	9850078	+	974.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16299.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.50349227625208	4.79803651585261	5.17881693699348	5.14161764710274	5.12937865149446	4.98499100791182	4.86200040902596	4.98749190387681	0.103072822705668	0.768690390181442	0.90939721515425
Merged-chr8-18912414-3	chr8	18912311	18912511	+	890.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38460.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	4.40854971318972	4.26519871839419	4.29791525098339	4.7986508103219	3.40828481850843	3.58050015095721	3.29555786990543	3.38147170700691	-3.43519242602966	5.00633956905935e-09	2.81251968576224e-07
Merged-chr3-52103032-4	chr3	52102924	52103124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	CpG	1982.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	6.15326747666382	6.69841015779523	6.59747323291799	6.33313488287558	6.69660554264542	6.87730613908409	6.50017815782206	6.52892473782412	0.289603206233903	0.215289586892298	0.52138741469861
Merged-chr8-47680515-4	chr8	47680422	47680622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5363.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	6.27492822128134	6.29554993942623	5.71379960771806	6.28448505008616	6.348585487927	5.92122033839316	6.16948740102877	6.21590965549626	0.0115435584747698	0.96436698976781	0.987309283922085
Merged-chr7-35036321-3	chr7	35036235	35036435	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 12 of 14)	intron (NM_008820, intron 12 of 14)	20231.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	3.73742306040108	3.8081310103759	4.96107383476051	4.90956843075722	3.3852709584865	3.98687871095169	3.84238908794468	3.79735503228536	-1.81875769637345	0.00186550775934262	0.0221603766358893
Merged-chr9-71129123-4	chr9	71129014	71129214	+	800.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073483, intron 4 of 6)	B3|SINE|B2	33519.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	4.43246399502451	4.82693599513672	4.38915998901934	4.61723423624691	4.27488496189645	4.47247820307401	4.45534011897839	4.47284301311676	-0.387737863298163	0.301445405402616	0.613453913648291
Merged-chr12-40548020-4	chr12	40547914	40548114	+	924.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	101961.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	3.99038192652947	4.41714990922857	4.23996281230912	3.84595352007024	4.442529361174	4.3675273031184	4.38887864461275	4.28181914258837	0.59932311423428	0.147011377703321	0.427735358815141
Merged-chr8-14890480-3	chr8	14890384	14890584	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	1948.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	6.27249706461706	6.54628595882415	6.74856787843288	6.88066885472636	6.76372753415092	6.38953992690577	6.83478146534649	6.7578057968957	0.0799975847108768	0.736142867630572	0.895884000208244
Merged-chr3-155093367-4	chr3	155093258	155093458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028938)	promoter-TSS (NM_028938)	20.0	NM_029330	75540.0	Mm.35218	NM_029330	ENSMUSG00000053870	Fpgt	1700016E03Rik	fucose-1-phosphate guanylyltransferase	protein-coding	8.52099741038417	8.58150963725586	8.76461180083104	8.62001709743083	8.84303208311234	8.76738920755525	8.88853985298788	8.54615554278434	0.181982220191729	0.245055084378009	0.556170860493583
Merged-chr12-3844489-3	chr12	3844428	3844628	+	873.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 2 of 22)	intron (NM_007872, intron 2 of 22)	17716.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	3.49828056215643	3.22357866956918	3.44888179983968	3.4270895131815	3.21754340072829	3.1405637409223	3.38318277657886	3.09850597073103	-0.692095192021332	0.204855292724967	0.508381384871013
Merged-chr13-113614126-4	chr13	113614037	113614237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	4427.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	7.31680618187038	7.24612066108285	7.83880120259955	7.52044147301193	7.30947641708633	7.33810047853261	7.66098290377631	7.30234051875774	-0.120338732119527	0.565594602195068	0.807629114072388
Merged-chr13-58521194-3	chr13	58521122	58521322	+	779.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	89655.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	3.79666928474943	3.46933758848277	3.84111568317236	3.55232131929903	3.40619832456723	3.35194739697466	3.42085042091171	3.83871588435148	-0.487283334547693	0.351022184949422	0.658515842668148
Merged-chr6-29467697-4	chr6	29467592	29467792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025381)	promoter-TSS (NM_025381)	-91.0	NM_025381	66144.0	Mm.371614	NM_025381	ENSMUSG00000004285	Atp6v1f	1110004G16Rik	ATPase, H+ transporting, lysosomal V1 subunit F	protein-coding	7.02626844788934	7.22019472375965	6.44586388172007	6.6922834752295	7.21562742656172	7.33200008127448	6.95478425156305	7.16158731812124	0.407406456595109	0.0817896319325691	0.310391565969734
Merged-chr19-6987687-4	chr19	6987627	6987827	+	963.357117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001185164)	promoter-TSS (NM_001185164)	-76.0	NM_011697	22340.0	Mm.15607	NM_011697	ENSMUSG00000024962	Vegfb	VEGF-B|Vrf	vascular endothelial growth factor B	protein-coding	4.66588540050056	4.42994703014128	4.50509682652817	4.82703709738393	4.52035171848186	4.63615150478227	4.68176044384652	4.66358187740756	-0.0210967874508347	0.953256111548909	0.983345411862723
Merged-chr14-8171898-4	chr14	8171817	8172017	+	881.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024221, intron 2 of 9)	intron (NM_024221, intron 2 of 9)	1075.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	4.24562937127959	3.98925212156676	4.20183243039024	4.6717488190492	3.8612930049782	3.9614500676274	4.22719562409607	4.32799436709907	-0.536576114078766	0.237405967943166	0.54759776377156
Merged-chr11-116623319-4	chr11	116623200	116623400	+	841.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	952.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	4.13430663781511	4.08221352993037	4.13494218300358	3.66255346884076	4.2284039852798	3.95049228934017	4.07072441817646	4.37940630749057	0.438654023053992	0.322060807766424	0.633556262222765
Merged-chr15-98089967-4	chr15	98089875	98090075	+	921.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144851, intron 1 of 17)	B2_Mm2|SINE|B2	-2614.0	NM_001163488	18642.0	Mm.272582	NM_021514	ENSMUSG00000033065	Pfkm	AI131669|ATP-PFK|PFK-A|PFK-M|Pfk-4|Pfk4|Pfka|Pfkx	phosphofructokinase, muscle	protein-coding	4.29009258303112	4.20643499194037	3.6110797718333	3.3126885086004	4.23576948165185	4.57703627250288	3.950664065091	4.20364839955329	0.862989943585661	0.104466070574924	0.355439313453752
Merged-chr2-165977015-4	chr2	165976932	165977132	+	875.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15605.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	3.62315568217651	3.68603232671527	3.68003958635702	3.67838205372302	4.01836006084215	3.48587021806903	3.99947713360673	4.01536585446553	0.685867794924725	0.143895364902615	0.422486003316556
Merged-chr2-118012434-4	chr2	118012322	118012522	+	913.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	Lx9|LINE|L1	98780.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	4.69970648259434	4.64821236381246	5.10420765935773	4.97357834849021	4.84969303835312	5.24503637759924	5.47606514980929	4.82044906669789	0.480107030961776	0.179316215754377	0.475558645945455
Merged-chr7-139296465-4	chr7	139296325	139296525	+	762.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47943.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	3.83391037588339	3.5422999173593	3.72772811650913	3.64245323867359	3.88158830722438	4.10325354297351	3.91587890658444	4.10729712681873	0.904849154187008	0.0409144465557535	0.204535394754872
Merged-chr2-158156669-4	chr2	158156564	158156764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10272.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	5.5272052119258	5.74373873432485	5.96946115884832	5.50097991803614	5.75743507897171	5.70564032175807	5.97932030401884	5.90161516986344	0.251374214776655	0.348404440394291	0.656235052875883
Merged-chr12-65075538-4	chr12	65075452	65075652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178912)	promoter-TSS (NM_178912)	-54.0	NM_178912	104806.0	Mm.374847	NM_178912	ENSMUSG00000055884	Fancm	AI427100|C730036B14Rik|D12Ertd364e	Fanconi anemia, complementation group M	protein-coding	7.62925437445376	7.89195869614256	7.65651779466798	8.0021927478683	8.00544006195386	7.81641828019222	7.71795540170723	7.66834587934567	-0.00113665157501168	0.995113686977171	0.998241123024805
Merged-chr16-93084512-4	chr16	93084424	93084624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-258450.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	7.07469219325429	7.46170628212018	6.99904493710085	6.81892771989948	7.50598788277533	7.38293285006634	7.60778071012096	7.27673378585561	0.468966723073323	0.0286621520485608	0.162587131069853
Merged-chr6-117828487-3	chr6	117828357	117828557	+	623.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12724.0	NM_001346649	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	3.59285765569022	3.40802750632997	3.59339009203405	3.47393824907536	3.39735065295796	3.49437431526726	3.11705235367	3.37870695787256	-0.558762773927289	0.286364924741638	0.598054698348964
Merged-chr12-102339328-3	chr12	102339234	102339434	+	725.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 3 of 9)	MLT1H|LTR|ERVL-MaLR	55693.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	3.8523940529073	4.0608653057178	4.03132284440599	4.02156721101509	3.22452300652635	3.37457066109189	3.38882302188583	3.85060392256688	-1.65327358946875	0.00187727480082595	0.022263002840385
Merged-chr9-15302218-1	chr9	15302118	15302318	+	727.0	f0_c57.idr	promoter-TSS (NM_133732)	promoter-TSS (NM_133732)	-611.0	NM_133732	70984.0	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	3.4196220903247	3.44720867371328	3.53632606091649	2.76112604654377	3.40133398919656	3.91315425984879	3.85826192634573	3.58868080151345	1.22618114979813	0.0419366696626376	0.20746840598526
Merged-chr1-120430318-3	chr1	120430219	120430419	+	900.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	74705.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	3.13733821942299	3.12192086145329	3.21948388146371	2.93198652747087	4.39487349206688	4.22591339886528	4.47102219746186	4.25138745480144	4.09177780436477	2.42276919266893e-13	2.92288624347427e-11
Merged-chr19-46899505-3	chr19	46899403	46899603	+	982.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029810, intron 5 of 17)	intron (NM_029810, intron 5 of 17)	62848.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	4.79285090757217	4.78617384837953	4.82571597569585	5.17233087689455	3.62323674950661	3.95786382281048	4.05669343601025	3.95445285462419	-2.61376865538653	3.90816803669055e-09	2.24607400051199e-07
Merged-chr14-51237716-4	chr14	51237640	51237840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18372.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	6.25666708455319	6.23063487308328	6.27534571382934	5.87875060453043	5.88808456891275	5.74890792852267	5.73668904536823	6.04186919924364	-0.462556103158966	0.0715535374738545	0.287210807187249
Merged-chr1-34839422-4	chr1	34839314	34839514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 1 of 6)	intron (NM_001160236, intron 1 of 6)	3636.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	6.64773356770522	6.46439555340118	6.05402038697542	6.835048484474	6.47616595277411	6.23259618120252	6.17396600801823	6.22152647430059	-0.382039533203879	0.138269665605803	0.413646725009686
Merged-chr8-3711885-4	chr8	3711786	3711986	+	954.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8765.0	NM_029465	75863.0	Mm.109183	NM_029465	ENSMUSG00000074491	Clec4g	4930572L20Rik	C-type lectin domain family 4, member g	protein-coding	5.1779713425654	4.8536483632925	4.90129123340504	5.4801210451488	5.43158083126108	4.87338121518679	5.183882586893	5.11142107767052	0.051804331948676	0.88220964288393	0.955654262385787
Merged-chr1-50962489-1	chr1	50962389	50962589	+	755.333313	f0_balb.idr	intron (NM_019790, intron 4 of 9)	intron (NM_019790, intron 4 of 9)	34966.0	NM_019790	56363.0	Mm.245154	NM_019790	ENSMUSG00000026109	Tmeff2	4832418D20Rik|7630402F16Rik|TR-2	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding	3.7527778885999	3.71421209425099	3.44235463323636	3.60458574681185	3.17884236525472	3.82636724874912	3.30843312882275	3.31814979019714	-0.688935816615542	0.206991446772022	0.511049184276
Merged-chr8-111875977-3	chr8	111875886	111876086	+	830.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025781, intron 1 of 2)	intron (NM_025781, intron 1 of 2)	689.0	NM_025781	66817.0	Mm.345350	NM_025781	ENSMUSG00000031953	Tmem170	9030409E16Rik|AA403674|D8Bwg1414e|Tmem170a	transmembrane protein 170	protein-coding	3.55192740026762	3.37018433385842	3.22147598819004	3.34811794774102	3.47302512060646	3.45402591187488	3.27129801074856	3.33975919859847	0.0494008748891467	0.92403118166133	0.971898050418734
Merged-chr15-35376635-3	chr15	35376516	35376716	+	862.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 2 of 61)	URR1A|DNA|hAT-Charlie	5070.0	NM_177151	666173.0	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	3.38256352467524	3.15881031433486	3.21161715555256	3.22296030743141	3.203213013384	3.32385166255599	3.20022176452628	3.57838144820568	0.321710724047302	0.549602888938631	0.798066561323089
Merged-chr15-98937475-4	chr15	98937350	98937550	+	844.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3060.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	4.12809744158334	3.60046901259358	3.73199137229289	3.64750242741778	4.20284246509305	4.06888874579312	4.10972733807342	3.99139486118903	0.872893938868872	0.0508836867577153	0.233954521008166
Merged-chr5-29731133-4	chr5	29731024	29731224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4774.0	NM_001359198	23950.0	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	HSJ-2|Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	6.69707786716342	7.26484178479058	6.97522087802412	6.16270539337658	7.12728763071067	7.0212953317301	6.95217746141703	6.75392847811133	0.201122930784982	0.46189885095555	0.743501704400988
Merged-chr2-60901669-4	chr2	60901615	60901815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-20277.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	7.17310552177336	7.3146095276651	7.78199526633	7.07692627767734	7.30665264171482	7.29288202306563	7.14977310470695	7.1104382055647	-0.186267178497867	0.396693150064987	0.695370677448547
Merged-chr8-117294125-2	chr8	117294045	117294245	+	545.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	37126.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	3.60734023508135	3.64902885693475	3.80722753251164	3.07662224804746	3.7474971301592	3.55214654135042	3.59312158305023	3.70917330110323	0.31720106393073	0.55703724208492	0.802309918338341
Merged-chr19-5568985-4	chr19	5568914	5569114	+	981.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033448, exon 2 of 2)	exon (NM_001033448, exon 2 of 2)	990.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	5.01938971293709	5.13750365371737	4.6981964691019	4.91232884616917	5.61629667233371	5.32948065320973	5.13016517098051	5.30298897851361	0.772959438177814	0.0142831255436523	0.101348909136766
Merged-chr10-67505557-2	chr10	67505457	67505657	+	909.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32312.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	2.91550752419308	3.10092932323421	2.91586573115256	3.24516446882255	2.6359894855456	2.5910162664674	2.84402579232293	2.97383128311881	-1.34518678030766	0.0473836208328813	0.224205194925457
Merged-chr7-120830800-4	chr7	120830695	120830895	+	980.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12036.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	4.86278016398306	5.19806754098027	5.2511164301674	5.08806389499188	4.92291823003447	4.79474881311101	4.63853730560726	5.06871200060754	-0.47004566956122	0.153716999354362	0.438569115642303
Merged-chr18-79994462-1	chr18	79994362	79994562	+	747.0	f1_balb.idr	Intergenic	L1_Mus2|LINE|L1	-52433.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	2.99401921257814	2.96839200339834	2.99446460114426	2.51338271529131	2.65903595699963	2.56703560310529	2.60828327924483	2.93677862824928	-0.84154696583856	0.232446099623641	0.542041702434514
Merged-chr6-126851505-2	chr6	126851388	126851588	+	777.783325	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1610.0	NM_009650	11642.0	Mm.87748	NM_009650	ENSMUSG00000030344	Akap3	Prka3	A kinase (PRKA) anchor protein 3	protein-coding	3.42818825206921	3.36080294404516	3.1164325955834	2.99314331483574	2.88165376460089	2.96517226559137	2.98271605904803	2.92506145363887	-1.2356646854383	0.0442520395262339	0.214550502107336
Merged-chr5-117424251-3	chr5	117424160	117424360	+	698.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	10258.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	3.29239719864054	3.46782816103074	3.29280065293176	3.2977748928889	3.40091216292914	3.27676803108136	3.77223649028791	3.35052631441993	0.4337819352247	0.40943520270387	0.705027516786277
Merged-chr1-191965244-4	chr1	191965134	191965334	+	922.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12136.0	NM_001177900	74023.0	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	4.86068562371735	4.06389787760285	4.68216586366149	4.29610621117699	4.87878503070807	4.7778974734683	5.02199333564123	4.55813652542024	0.687835008612785	0.0846466101163047	0.316617519128201
Merged-chr4-45452690-4	chr4	45452542	45452742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 3 of 5)	intron (NM_001033306, intron 3 of 5)	-43876.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	6.48954225426793	6.60746916552799	6.8826733583204	7.10218004201887	6.79329948033556	6.25801897757102	6.91059169949968	6.81135404558317	-0.119410715978796	0.633780509878453	0.844859659706135
Merged-chr9-44175998-5	chr9	44175872	44176072	+	696.633301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	intron (NM_007619, intron 2 of 15)	41314.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	3.33662748042017	3.11409010839376	3.33711603027047	3.25742509818556	2.97514227563284	3.09467096140674	3.21765200494156	2.91579533632802	-0.839472037394055	0.145351724213369	0.424784636808969
Merged-chr9-37177240-4	chr9	37177068	37177268	+	821.575012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29846.0	NM_001029838	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	3.16799925992719	3.11773536071432	3.10647483370801	3.33523626772769	3.19523245771552	3.39626737362598	3.21553912173711	3.28223526080975	0.279689846456176	0.608076444524308	0.830339432237189
Merged-chr2-53000534-4	chr2	53000448	53000648	+	936.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	142680.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	4.28426923448529	3.98978831694776	3.81343833430238	4.25903278983346	4.12471248383413	4.04426876097717	4.09856475872633	3.81142842386264	-0.211999604698068	0.630138396050419	0.842667104605937
Merged-chr11-47171358-4	chr11	47171262	47171462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 3 of 7)	intron (NM_011891, intron 3 of 7)	207940.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	7.14667478502497	6.67726398796613	7.47085539425323	7.39321456139817	6.5829293009792	6.85796398508908	7.1448907339808	6.86947963182698	-0.464195548668029	0.0593978933264081	0.25685226250934
Merged-chr9-49427629-3	chr9	49427493	49427693	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172922)	promoter-TSS (NM_172922)	-572.0	NM_172922	244859.0	Mm.119994	NM_172922	ENSMUSG00000032257	Ankk1	9930020N01Rik	ankyrin repeat and kinase domain containing 1	protein-coding	5.37316692994999	5.27312435252164	5.59647978178799	5.90223965492759	3.53171454678737	3.8563761399691	3.70281495254836	3.86542822212603	-5.33940906353941	6.83915894763646e-16	1.27770208591553e-13
Merged-chr14-21751391-4	chr14	21751269	21751469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359953)	promoter-TSS (NM_001359953)	-183.0	NM_001359953	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	5.83467493062169	5.76625291635201	6.22146134784207	5.82457558531441	6.08595014760301	5.7217662517031	5.98202933840638	5.50895205386571	-0.099724107986065	0.719900344325032	0.888028373825666
Merged-chr1-51529851-4	chr1	51529757	51529957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	-51458.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	5.88136939071894	5.6852919853298	5.7420968021706	5.78492412389068	5.59889609803393	5.78814591337119	6.05483414531165	5.5231091809181	-0.0362687079260454	0.892068597925937	0.9596010491436
Merged-chr6-146913252-3	chr6	146913117	146913317	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355728, intron 1 of 30)	intron (NM_001355728, intron 1 of 30)	24723.0	NM_026221	67533.0	Mm.103382	NM_026221	ENSMUSG00000016487	Ppfibp1	4632409B19Rik|AW214454|AW261454	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding	3.57420364623518	3.54066470653841	3.39737282427835	3.53078135851298	3.78793904258589	3.57441506654535	3.66554169371797	3.91011627935591	0.712256969536007	0.133195308847813	0.406478576642108
Merged-chr5-123061511-4	chr5	123061329	123061529	+	996.590942	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-14413.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	4.35397632786452	4.48742774821769	4.69616169774751	4.02094806728247	4.7240449073702	4.90547258159248	4.55688766630358	5.04955630430054	0.92633875880236	0.0175925815534622	0.117304202566172
Merged-chr14-34674731-4	chr14	34674618	34674818	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004436, intron 1 of 18)	CpG	790.0	NM_001301330	218914.0	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	4.73873409679191	4.28037463281536	4.42252991913086	4.37401018499895	4.46504140782613	4.64122172350081	4.78417348401853	4.70081193229066	0.425169179634557	0.247969320393647	0.559137354284593
Merged-chr16-18443636-3	chr16	18443518	18443718	+	962.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001353143, intron 8 of 16)	intron (NM_001353143, intron 8 of 16)	-16902.0	NM_001111062	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	3.71066727109356	3.57051634547537	3.80879040297309	3.74511587416458	3.52132996553961	3.72235211772382	3.59161169521646	3.65740456579342	-0.288108157557921	0.539964993616985	0.792440690679099
Merged-chr3-131218478-3	chr3	131218373	131218573	+	888.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276403, intron 11 of 11)	intron (NM_001276403, intron 11 of 11)	53628.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	4.19524009737492	3.98371581021818	4.47834690365149	4.66872394407721	4.05250013289037	3.95544721830298	4.13182244319238	3.9452610611895	-0.879789635301941	0.0468554109130751	0.22251943510687
Merged-chr11-69326187-4	chr11	69326081	69326281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010599)	promoter-TSS (NM_010599)	-77.0	NM_010599	16499.0	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	6.65465801137815	7.02825011755242	6.36025107286618	6.60502998172648	6.82352011583029	6.87787949179396	6.73963672829423	6.75510728396457	0.161958825105642	0.469863224286065	0.748648947719156
Merged-chr12-51870370-2	chr12	51870273	51870473	+	826.916626	f0_balb.idr|f1_balb.idr	Intergenic	RMER16_Mm|LTR|ERVK	-40837.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	3.69317235958869	3.53409050178993	3.69377364477136	4.01021644240793	3.07336219038482	3.0293638020112	2.91008182531676	2.9940000913204	-3.10741481009608	5.56940967586238e-06	0.000163137864740003
Merged-chr17-73882369-4	chr17	73882255	73882455	+	871.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67841.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	4.15068592947712	4.29245293840478	3.99952569892849	4.24486880020503	4.21754869895163	4.45783689393131	4.18043790829453	4.48431261561006	0.375640961446216	0.344992432891484	0.653357561969643
Merged-chr6-58611969-4	chr6	58611844	58612044	+	925.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011920, intron 1 of 15)	RMER17C2|LTR|ERVK	15272.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	4.68542168878667	4.37784422733099	4.57055202235617	4.63502911887501	4.52527044917984	4.8183419166558	4.62704125484141	4.44089496011843	0.0678604957839567	0.85045079840276	0.943621103014919
Merged-chr9-107675905-3	chr9	107675809	107676009	+	786.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008140, exon 8 of 9)	exon (NM_008140, exon 8 of 9)	3683.0	NM_008140	14685.0	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	3.48790322043498	3.39370658491645	3.33322080089749	3.22223678088418	3.17654491317	3.13162294716428	3.20632299769294	3.38541160221637	-0.480378073018211	0.375255724816614	0.678274822106106
Merged-chr1-91019112-2	chr1	91019012	91019212	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	20385.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	3.3790265516696	3.41701808780253	3.37952560131558	2.9249423227602	3.11534057371833	3.13426194457669	3.36509467897232	2.95205605803401	-0.508892761426018	0.396762526928145	0.695372415340369
Merged-chr19-59037683-3	chr19	59037573	59037773	+	593.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 5 of 16)	intron (NM_001114312, intron 5 of 16)	38396.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	3.52682067319267	3.24929265753139	3.42095346997722	3.48057141388316	3.57279562858752	3.14741348339155	3.1680194336875	3.71397109641405	0.0173167745519274	0.975248624812494	0.991193161400585
Merged-chr17-46783121-4	chr17	46782990	46783190	+	865.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025433)	promoter-TSS (NM_025433)	-434.0	NM_025433	66229.0	Mm.218533	NM_025433	ENSMUSG00000063888	Rpl7l1	1500016H10Rik	ribosomal protein L7-like 1	protein-coding	3.88420967008568	3.92237071021832	3.681469849856	3.80036764933647	3.954303286431	3.62115064558923	3.36318746401357	3.97291429737268	-0.191061007499541	0.701567228508463	0.879767652498371
Merged-chr13-24105499-4	chr13	24105391	24105591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026825, intron 17 of 37)	MTEa|LTR|ERVL-MaLR	-114277.0	NM_145399	214189.0	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	7.65215853084313	7.90560539167543	7.73527835297152	7.89670232128306	7.54883591659662	7.72495432726872	7.51084567018767	7.48647495979606	-0.315222765116765	0.0685762004438348	0.279645170274158
Merged-chr10-20348621-3	chr10	20348513	20348713	+	852.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027930, intron 2 of 6)	intron (NM_027930, intron 2 of 6)	794.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	3.33015553967901	3.63874203290753	3.64067013320221	3.00024394169926	3.58979270627491	3.87134307619588	3.73063798404847	4.31261546958143	1.46197422945664	0.00856097447705703	0.0704790194659314
Merged-chr16-76309344-4	chr16	76309242	76309442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358238, intron 3 of 3)	intron (NM_001358238, intron 3 of 3)	63707.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	5.37503709569561	5.27872005126404	5.7730629391712	6.04116871232802	5.16499802405182	4.68825144594293	5.12820140819006	5.34270351658661	-1.0001849917222	0.00412066133981336	0.0409986795508212
Merged-chr16-38799342-2	chr16	38799203	38799403	+	797.5	f0_balb.idr|f1_balb.idr	intron (NM_178924, intron 1 of 7)	intron (NM_178924, intron 1 of 7)	900.0	NM_178924	22268.0	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	3.14984301090894	2.83470443790091	2.77675135354069	3.128790543206	2.50063328689898	2.4435307170144	2.4958995902827	2.50100453785291	-2.9204476188224	0.000409254464755076	0.006557929659343
Merged-chr8-79143968-4	chr8	79143863	79144063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	104620.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	6.07925135824728	6.19200580607793	6.99549044217318	7.24691562004135	6.18621461607633	5.92852259043915	6.17807859878181	6.43099251762744	-0.796569681082182	0.0129495839273365	0.0947510726114188
Merged-chr14-118709915-4	chr14	118709824	118710024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-3705.0	NM_001033336	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	5.84393586882493	6.04282400941238	6.07732401497441	6.61531878190894	6.40674061097367	6.14342356936168	6.14761566231082	5.89075516957971	-0.0514801850420967	0.856430899581538	0.945966867639044
Merged-chr17-70849877-4	chr17	70849783	70849983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164076)	promoter-TSS (NM_001164076)	-93.0	NM_001164076	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	7.1692203471365	7.34431790580143	7.29203453253641	7.00971978376518	7.14195816354013	7.59870703913245	7.37564290762812	7.4994163725669	0.276754823181117	0.165817747745916	0.456772663351364
Merged-chr14-75024983-4	chr14	75024881	75025081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198642, intron 1 of 13)	intron (NM_198642, intron 1 of 13)	8954.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	5.57451889791718	6.21956589368556	5.57549111746462	5.45184632937521	5.78034567674123	5.97615660236849	5.37143028226947	5.42573537220825	-0.12711415692258	0.693827688480942	0.875575509509697
Merged-chr9-32501598-4	chr9	32501487	32501687	+	919.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	39865.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	4.29047653608495	4.15409835524142	4.10652844177951	4.53226781484911	4.42626545794251	3.95390751239442	4.27210058705468	4.33070052416242	-0.0814114505728634	0.846728852357969	0.941987667932478
Merged-chr5-135870696-4	chr5	135870592	135870792	+	875.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021403, intron 14 of 14)	URR1A|DNA|hAT-Charlie	-17227.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	4.37604223937203	4.71942060801978	4.12784001543372	4.133409257944	4.65861545663919	4.50764203651852	4.26405473831466	5.00378317312374	0.625743525570057	0.135337826945726	0.409581624829642
Merged-chr5-31179443-3	chr5	31179333	31179533	+	895.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027901, intron 1 of 18)	intron (NM_027901, intron 1 of 18)	711.0	NM_027901	71752.0	Mm.271923	NM_027901	ENSMUSG00000106864	Gtf3c2	1300004C11Rik|2610510G03Rik|AI225816|AU041069|TFIIIC110|mKIAA0011	general transcription factor IIIC, polypeptide 2, beta	protein-coding	3.42317795501225	3.71721919201663	4.00886964338505	3.62870911152234	3.69452528053081	3.72948655612177	4.18534877879957	3.66560658355358	0.375050444947124	0.452253215256695	0.736617734348328
Merged-chr10-57637207-4	chr10	57637108	57637308	+	956.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039051, intron 1 of 4)	intron (NM_001039051, intron 1 of 4)	5227.0	NM_001039051	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	5.34153860750165	4.96083190336197	5.22875518697991	5.50207382326831	4.96148457976078	4.81612056005273	4.82756714576532	5.19503668885778	-0.617189994705823	0.0605463256630889	0.260052547978977
Merged-chr10-81133864-3	chr10	81133757	81133957	+	901.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-2414.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	2.93997057566054	2.84623232203882	2.94032253111861	2.4501266772133	3.33109792595737	3.11890743502424	3.17005784741481	3.33808032518436	1.93311956721992	0.00312067675410317	0.0329613667725642
Merged-chr5-117977264-2	chr5	117977164	117977364	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346588, intron 1 of 11)	CpG	494.0	NM_001346588	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	3.3016774550241	3.0834174967242	3.30212107839925	3.28775311600099	3.35746833612701	3.16849178118803	3.049922694848	3.45609186623843	0.0868487833339382	0.875127378253022	0.953043809729561
Merged-chr4-84362549-3	chr4	84362453	84362653	+	834.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172870, intron 4 of 5)	intron (NM_172870, intron 4 of 5)	312533.0	NM_172870	242509.0	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	3.81157880794181	4.35506698324739	4.34505390164726	4.70154463688507	3.98139655600726	3.93402428614949	4.15709846015251	3.8684265817615	-0.935338888445929	0.0446840776907915	0.215845910615576
Merged-chr7-143052784-4	chr7	143052671	143052871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133655)	promoter-TSS (NM_133655)	21.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	6.84910263216173	7.25187732734623	6.68545546560091	6.53409858198859	7.13261832387676	7.28023895739165	7.09072424004749	7.0401447064979	0.396012630970582	0.0829489529732712	0.312910863142771
Merged-chr3-137951971-1	chr3	137951871	137952071	+	1000.0	f0_balb.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	29578.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	5.38067747277697	5.10671623297291	5.07667132188025	5.39923394205726	5.43327878126171	4.85911254881798	5.11873121385785	5.10722151258534	-0.178384216211277	0.579799460480396	0.815474743074892
Merged-chr5-120558976-4	chr5	120558883	120559083	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145853, intron 3 of 27)	intron (NM_145853, intron 3 of 27)	29630.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	5.2727619328147	5.13947213292014	5.49656085075525	5.18572738212609	4.87387500501711	5.56255949504769	5.12038559374137	5.41371922338109	-0.0305337419383476	0.925069871004992	0.972377995573636
Merged-chr19-21820413-4	chr19	21820341	21820541	+	846.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033759, intron 12 of 23)	intron (NM_001033759, intron 12 of 23)	42101.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	4.18117454546436	4.70499532526912	4.02472795656651	3.72703369361322	4.7040501828135	4.69769320303694	4.34563953392022	4.07676276983562	0.63932758364138	0.179616460672631	0.475824186021704
Merged-chr12-35576343-4	chr12	35576248	35576448	+	847.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41359.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	4.32507973006616	4.10680304229963	4.3257579763809	4.64838928560442	4.38217277556612	4.05972876450244	3.92186294705019	4.19070402029642	-0.540429061941452	0.210916667811654	0.515586149397821
Merged-chr8-79398638-4	chr8	79398551	79398751	+	995.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	CpG	817.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	5.23236303730976	4.96356377968384	6.03282112456869	5.6561309452478	5.22404631051947	5.23776414939797	5.38925784231139	5.26203388288119	-0.45545053702059	0.189361093257821	0.488240753999997
Merged-chr11-68459677-4	chr11	68459563	68459763	+	987.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	L1ME2|LINE|L1	27538.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	5.06615833308732	5.31021303498111	4.72883646555061	4.64586676773849	5.3662992722132	5.30398231618252	4.93986756161493	4.88685079877032	0.364638727316891	0.307589982999716	0.619909037882575
Merged-chr6-83323802-4	chr6	83323690	83323890	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2249.0	NM_145571	232157.0	Mm.29500	NM_145571	ENSMUSG00000043131	Mob1a	4022402H07Rik|MOB1|MOB4B|Mobk1b|Mobkl1b	MOB kinase activator 1A	protein-coding	4.82705827085935	5.03263080605791	5.05387339715793	5.25537517962194	5.48360809238993	5.08481980144892	4.9947278995403	5.38250019862121	0.362861162540165	0.264459902850384	0.576455127446606
Merged-chr12-8865053-4	chr12	8864965	8865165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-56242.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	6.35045475691438	6.44942320317049	6.60940315775874	6.18737507534231	5.86471390970706	6.03190447277063	5.96787754408493	5.87681542399947	-0.721838091130453	0.00278337391428519	0.0301319805087308
Merged-chr4-21775635-4	chr4	21775523	21775723	+	834.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290425)	promoter-TSS (NM_001290425)	-647.0	NM_001290425	77593.0	Mm.154306	NM_152825	ENSMUSG00000040455	Usp45	3110003C05Rik|4930550B20Rik|AI843191|Gcap7	ubiquitin specific petidase 45	protein-coding	4.01154081725262	3.76178644846324	3.62815796417407	3.79576521262687	3.92765282170195	3.92864228774293	4.46044163159533	4.18680078197138	0.906302809109843	0.0450174565567678	0.216872929966442
Merged-chr6-8209212-4	chr6	8209121	8209321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145374)	promoter-TSS (NM_145374)	-6.0	NM_145374	252875.0	Mm.257151	NM_145374	ENSMUSG00000042447	Mios	C81488	meiosis regulator for oocyte development	protein-coding	8.1604276700222	8.39176515987588	8.29162515217783	8.4321374698332	8.22460958524366	8.2821291956562	8.38525051088184	8.07279346236046	-0.105586135115721	0.515780429221677	0.777746275137059
Merged-chr11-114895169-2	chr11	114895069	114895269	+	725.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_170758, intron 3 of 6)	intron (NM_170758, intron 3 of 6)	5128.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	3.36527753140787	3.70979932704983	3.24352976593077	3.2107530498485	3.52438420974734	3.64672578859483	3.29425212322458	3.30438081407988	0.195092648309326	0.719631468977192	0.888022825078143
Merged-chr17-6430785-2	chr17	6430685	6430885	+	908.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009342, intron 1 of 4)	intron (NM_009342, intron 1 of 4)	673.0	NM_009342	21648.0	Mm.1948	NM_009342	ENSMUSG00000096255	Dynlt1b	AGS2|Dynlt1|Tctex-1|Tctex1	dynein light chain Tctex-type 1B	protein-coding	3.17881202744946	3.32617917752106	3.07317942310015	2.80498102423404	2.7557668646371	2.79208554129322	2.68290977860312	3.01459947880884	-1.33928678864815	0.0458272089226208	0.219599764636006
Merged-chr13-12340784-4	chr13	12340680	12340880	+	942.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033268)	promoter-TSS (NM_033268)	-48.0	NM_033268	11472.0	Mm.37638	NM_033268	ENSMUSG00000052374	Actn2	1110008F24Rik	actinin alpha 2	protein-coding	4.72216296147573	4.41014286747512	4.60678568892391	4.54306544445553	4.69363491257463	4.69823302959167	4.50261466062195	5.01468633087944	0.363183688839777	0.308739639156407	0.621101988838968
Merged-chr9-122294544-4	chr9	122294439	122294639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133979)	promoter-TSS (NM_133979)	-116.0	NM_133979	102566.0	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding	8.84460032540665	8.94671607798468	8.84597298383736	8.68474201308976	9.04041105330218	9.1555969184826	9.16746666244299	8.7878484809631	0.267931765011693	0.0913058643494891	0.330208016948917
Merged-chr6-29170186-4	chr6	29170096	29170296	+	750.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001101443, exon 5 of 5)	exon (NM_001101443, exon 5 of 5)	-5472.0	NM_133925	68272.0	Mm.40802	NM_026650	ENSMUSG00000029701	Rbm28	2810480G15Rik|AI503051	RNA binding motif protein 28	protein-coding	3.439417727175	3.49700999161439	3.43987672888986	3.33108047667875	3.53875138191862	3.43720320691723	3.47986570372518	3.32297559807964	0.100039653506095	0.841807854409619	0.93994803474123
Merged-chr1-97676358-4	chr1	97676265	97676465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-14347.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	6.20463203072588	6.00427867970863	6.16558162532491	6.54361121128071	6.45445454678332	6.56284201892787	6.19358407249807	6.05547944442337	0.10962603186461	0.670748155317804	0.864239504504932
Merged-chr8-125224618-4	chr8	125224534	125224734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 10 of 12)	intron (NM_174854, intron 10 of 12)	170439.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	5.78837685513777	5.93408877087691	5.90911807243937	6.23532684324012	5.74922679027252	5.80729470416409	6.18023969997581	5.88187632122309	-0.134234566188631	0.612751385288907	0.832832725096038
Merged-chr9-45179474-4	chr9	45179376	45179576	+	958.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145403, intron 6 of 12)	intron (NM_145403, intron 6 of 12)	-16290.0	NM_001198971	408059.0	Mm.249297	NM_001198971	ENSMUSG00000091996	BC049352	SMIM35	cDNA sequence BC049352	protein-coding	6.07438133362273	5.8554547193881	5.84870984754509	6.03134251077232	5.7113165547241	5.69195498386528	5.07864848844524	5.53950805901158	-0.699812814929716	0.0133342947049281	0.0967307136977249
Merged-chr12-21336014-4	chr12	21335912	21336112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291871, intron 11 of 18)	intron (NM_001291871, intron 11 of 18)	19620.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	7.57810998396527	7.84212300673592	7.25631437163281	7.28801727758226	7.94528446004022	7.90740657132299	7.71579986436551	7.5009142644649	0.357046921048267	0.0910968631024371	0.329806071466875
Merged-chr11-74897191-4	chr11	74897112	74897312	+	995.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177325)	promoter-TSS (NM_177325)	-132.0	NM_197943	97761.0	Mm.245894	NM_197943	ENSMUSG00000038351	Sgsm2	D630003G22Rik|R74628|Rutbc1|mKIAA0397	small G protein signaling modulator 2	protein-coding	5.30961541719802	5.11690344677137	5.19164853323595	4.88299872505889	5.33137133248188	4.97246913883202	5.19660006233864	5.21882700428582	0.146380279129991	0.640169019525237	0.847994583852368
Merged-chr9-55024069-4	chr9	55023977	55024177	+	925.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145129, intron 3 of 5)	intron (NM_145129, intron 3 of 5)	2482.0	NM_145129	110834.0	Mm.63569	NM_145129	ENSMUSG00000032303	Chrna3	(a)3|A730007P14Rik|Acra-3|Acra3	cholinergic receptor, nicotinic, alpha polypeptide 3	protein-coding	4.51357221244837	4.52501777931221	4.4301123200873	4.07308384981183	4.57370945064076	4.51592237216846	4.64517619860571	4.62789686250806	0.485126228111871	0.19885954730589	0.500526867107314
Merged-chr9-96375581-3	chr9	96375499	96375699	+	819.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11168.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	1.90852879913425	1.87342932950948	1.90865916341148	1.69992209606355	2.40662620695048	2.46543792567197	2.40521825640844	2.4150052415707	6.35926631055368	4.41829807871388e-09	2.51390918421083e-07
Merged-chr6-16898591-4	chr6	16898439	16898639	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031198)	promoter-TSS (NM_031198)	-98.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	5.39664573057377	5.88487676340389	5.0163384307616	4.81846059473388	5.23362248671159	5.59772480030499	5.02811507303262	4.7254396781888	-0.289777131681011	0.4696514481143	0.748495910704808
Merged-chr4-135353265-4	chr4	135353166	135353366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130477)	promoter-TSS (NM_001130477)	-52.0	NM_001130477	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	8.11664113283116	8.55960077943232	8.03878638556721	7.71631693791698	8.26134544320835	8.66902137704885	8.27392009984091	8.16882677377816	0.27507599889544	0.211995364927862	0.516803139947952
Merged-chr17-34312427-4	chr17	34312307	34312507	+	924.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010382, intron 2 of 5)	intron (NM_010382, intron 2 of 5)	6540.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	4.20686265660673	4.18719556870291	4.20749608318112	3.7432257260853	5.76158949749336	5.10778265711746	5.28916643994289	5.50416346643666	2.90731952223587	1.59181643682431e-15	2.7907365063231e-13
Merged-chr14-69238392-4	chr14	69238276	69238476	+	860.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46727.0	NM_026331	67712.0	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	3.79998964537753	3.6946015403145	3.18833347710223	3.82456793551507	3.77947987412828	3.81736410946712	3.73505977146934	3.93707258465301	0.471364103546523	0.363199316380971	0.668342704187615
Merged-chr12-32635209-4	chr12	32635078	32635278	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-185157.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	6.70173218270966	6.702270781075	6.81989394875093	7.26866291737767	5.71098936224266	5.51125521980228	5.60625258911706	5.96107330477793	-1.81624928186742	5.8557628380881e-12	5.52792830251825e-10
Merged-chr14-21751831-1	chr14	21751731	21751931	+	705.0	f1_c57bl6.idr	intron (NM_001359953, intron 1 of 5)	intron (NM_001359953, intron 1 of 5)	279.0	NM_001359953	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	2.9125778586258	2.64328905783251	2.65057130344725	2.58928262451686	2.9009537482133	2.96144871834617	2.84168344080075	3.07809174018147	1.15467293581632	0.0635755297437521	0.267686638960694
Merged-chr1-74506691-3	chr1	74506571	74506771	+	982.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310662)	promoter-TSS (NM_001310662)	611.0	NM_021383	58184.0	Mm.291708	NM_021383	ENSMUSG00000026174	Cnot9	2610007F23Rik|AI593551|Fl10|Rqcd1	CCR4-NOT transcription complex, subunit 9	protein-coding	3.85212009092584	3.88397233872382	3.95632876251878	3.34040937754005	4.21633261568461	4.22455999594748	3.83676526412214	4.30058486203096	1.06992663894587	0.0251602686018887	0.149078727945878
Merged-chr7-28981931-4	chr7	28981829	28982029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285943)	promoter-TSS (NM_001285943)	-41.0	NM_001285942	73830.0	Mm.29714	NM_028659	ENSMUSG00000053565	Eif3k	1200009C21Rik|Eif3s12	eukaryotic translation initiation factor 3, subunit K	protein-coding	8.15155490290303	8.12550602935415	8.22484211836275	7.9720245533653	8.23540232882639	8.40253364187213	8.02494429138132	8.34139861550879	0.181146196245228	0.279251623458275	0.591414540930601
Merged-chr7-5020391-4	chr7	5020280	5020480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290426)	promoter-TSS (NM_001290426)	4.0	NM_001033383	319748.0	Mm.86607	NM_001033383	ENSMUSG00000074405	Zfp865	6430526N21Rik|Znf865	zinc finger protein 865	protein-coding	7.71990029432625	7.80345559282952	7.4485230798892	7.73649080993174	7.93989077105904	7.98530647006912	7.85099047729067	7.83276221815754	0.280320241214129	0.0998499889132924	0.346609234862679
Merged-chr8-128686249-4	chr8	128686162	128686362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010578, intron 1 of 15)	CpG	608.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	5.74916899712082	6.36953474154691	6.21811167263087	6.0124754830816	6.44192676336072	6.16033201017226	6.76735885771348	6.30788867311827	0.504437476515379	0.0537606399876124	0.242038494223799
Merged-chr5-72250402-3	chr5	72250304	72250504	+	876.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 9 of 22)	intron (NR_003966, intron 9 of 22)	47061.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	3.64393830008816	3.5500255001962	3.59261290376628	3.44360014156991	3.49062140443938	3.53762006214469	3.72560161945279	3.59059907149438	0.115628561997239	0.810204125069257	0.92679579587174
Merged-chr14-118713538-4	chr14	118713450	118713650	+	941.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-7331.0	NM_001033336	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	3.92591993516394	3.87713954296081	4.34304854172917	4.21914687336965	4.19936126166013	3.99263501200708	4.28311032750141	4.30017608648201	0.225336243707467	0.595117879656537	0.823780378703952
Merged-chr7-125620232-4	chr7	125620124	125620324	+	931.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021887, intron 1 of 8)	MTD|LTR|ERVL-MaLR	16795.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	4.00826921146445	4.60192212836775	4.37073376947789	4.43841725168416	4.30575514288073	4.82399864241605	4.30560377266952	4.85127215312459	0.482287595373785	0.24841051845482	0.55951124300554
Merged-chr7-98655839-4	chr7	98655745	98655945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172280, intron 1 of 19)	CpG	724.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	6.18773123937515	6.19079346593815	6.12877403927044	6.09729041861899	6.0373987387977	6.19832761615523	6.13758290451515	6.39927105938907	0.0694318971415877	0.763193047009843	0.907127891712087
Merged-chr10-34297465-4	chr10	34297367	34297567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030203)	promoter-TSS (NM_030203)	46.0	NM_030203	72480.0	Mm.21485	NM_030203	ENSMUSG00000039485	Tspyl4	2610102M01Rik|B230210I21Rik|D10Bwg0791e	TSPY-like 4	protein-coding	6.45285235881253	6.38701145316462	6.07361078636649	6.51676196753997	6.51294708221287	6.77629095096649	6.80347323329489	6.56489284557145	0.414322149864684	0.0672473632267045	0.276682084804254
Merged-chr12-81484962-4	chr12	81484876	81485076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132134)	promoter-TSS (NR_132134)	-125.0	NR_132134	66272.0	Mm.439970	NM_025461	ENSMUSG00000091803	Cox16	1810020G14Rik|1810055I05Rik|BB388670	cytochrome c oxidase assembly protein 16	protein-coding	6.98652243307872	7.01609095196377	7.66312737079726	7.11824788791842	6.94786206734399	7.25251558457813	7.08714615158946	6.98280728335464	-0.209205944894167	0.354061355097483	0.660831376621657
Merged-chr1-55029593-4	chr1	55029484	55029684	+	988.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2106.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	6.05914225430951	5.86799110252674	5.86348440322258	6.12053961376522	5.00245859338446	5.0323118826802	4.99362180713532	5.46193112871895	-1.48680133739882	3.18307384011173e-07	1.22801090983909e-05
Merged-chr2-48716418-4	chr2	48716309	48716509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97700.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	6.47115047388442	6.37325252873335	6.26624224340084	6.39476464271122	6.29270271030157	5.86562706537008	6.09697230888289	6.05988584225523	-0.422921907538574	0.0702120914032394	0.283711381619926
Merged-chr17-86167551-4	chr17	86167454	86167654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011104)	promoter-TSS (NM_011104)	-231.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	7.34966649131682	7.45254946977929	7.3089550728008	7.31357311123842	7.54551540497171	7.53836710453341	7.49595152298827	7.57169622703143	0.243291796587716	0.149935857963401	0.432360854406563
Merged-chr1-166160843-4	chr1	166160760	166160960	+	908.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021610, intron 4 of 6)	intron (NM_021610, intron 4 of 6)	30639.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	4.54911267821111	4.70823960407677	4.75285291810518	4.87800171869305	4.98308782784913	4.63556435072919	4.73059977492653	4.92499076033396	0.196124004907846	0.568411854174248	0.808665348796528
Merged-chr5-147459941-4	chr5	147459847	147460047	+	925.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 4 of 18)	intron (NM_028291, intron 4 of 18)	29791.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	5.20991253002182	4.49017225017698	4.73064764955008	5.17374448651817	4.8755473368552	4.78025136875688	5.09672137854668	5.26287765646474	0.136664248021361	0.711951978924285	0.884700502034922
Merged-chr2-180954354-1	chr2	180954254	180954454	+	601.0	f0_balb.idr	intron (NM_001141933, intron 1 of 5)	intron (NM_001141933, intron 1 of 5)	345.0	NM_001141933	58237.0	Mm.40361	NM_021426	ENSMUSG00000027574	Nkain4	AB030182|C030019F02Rik	Na+/K+ transporting ATPase interacting 4	protein-coding	2.71398772480701	2.66638132549941	2.6539022115432	2.41324055700791	2.46882774911053	2.4823150748707	2.64410986299468	2.58923815417857	-0.333768049782768	0.627307805671525	0.841125213379356
Merged-chr4-107285642-4	chr4	107285542	107285742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21526.0	NM_007860	13370.0	Mm.148342	NM_007860	ENSMUSG00000034785	Dio1	5DI|D1|ITDI1|TXDI1	deiodinase, iodothyronine, type I	protein-coding	7.87226214502023	7.87650987684692	7.71006175181052	7.92670166862708	7.73697436055512	8.08692515204697	7.83555903219193	7.72133410163471	-0.00551200709393203	0.974685354598957	0.990960275032127
Merged-chr8-26744619-4	chr8	26744522	26744722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79801.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	6.33410413575307	6.13591790541543	7.0107578104516	6.85518953322368	6.1741669291768	6.22237814065514	6.16562698002933	6.50455695964954	-0.540642770512058	0.0491085729005565	0.229089872530172
Merged-chr17-26571594-4	chr17	26571498	26571698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	L1MD3|LINE|L1	10086.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	7.6295271472071	7.64553251857904	7.9344625472717	7.60315026259944	7.32130974118249	6.86777527663303	6.9716946065336	7.17765238009397	-0.802108794479729	6.20592093009332e-05	0.00135804147449699
Merged-chr2-131211027-4	chr2	131210919	131211119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110992, intron 1 of 1)	intron (NR_110992, intron 1 of 1)	659.0	NR_110992	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	6.36470502360956	6.86535639052991	6.58962956643753	6.12721485397438	6.9370035123317	6.76581177643579	6.42359431178963	6.50352648527377	0.250308715628076	0.33528853116045	0.645664740658801
Merged-chr1-170939470-4	chr1	170939389	170939589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11906.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	6.93809777274431	6.63745241229816	6.8750262201772	7.06866318008471	6.75283578431577	6.6879245289676	6.57807194714214	6.8024263950654	-0.266317204280551	0.204260193064912	0.507453013234001
Merged-chr7-19023555-4	chr7	19023431	19023631	+	943.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026605)	promoter-TSS (NM_026605)	8.0	NM_008260	15377.0	Mm.42260	NM_008260	ENSMUSG00000040891	Foxa3	Hnf-3g|Hnf3g|Tcf-3g|Tcf3g	forkhead box A3	protein-coding	4.17181855564277	3.91724072403367	4.26625992743801	4.09684633680944	4.53894966159756	4.43918474491561	4.37495449439719	4.50938656809578	0.858661059079335	0.025063172777703	0.148664297928677
Merged-chr13-93995607-3	chr13	93995524	93995724	+	753.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62172.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	3.95816524457938	3.47585417957333	4.30551609734526	3.85379108070089	3.65870364447941	3.59802842083338	3.40335503967336	3.7125154622354	-0.977326984639839	0.0620568869666348	0.263477303125186
Merged-chr4-6355537-4	chr4	6355463	6355663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-10117.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	7.17278484579033	7.46250650727761	7.50991650909117	7.18393644238745	7.3526393784527	7.41718891468434	6.86113595682684	6.57158765201822	-0.3213184140128	0.188454046131495	0.487023527029533
Merged-chr19-14596503-4	chr19	14596407	14596607	+	954.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302951, intron 2 of 19)	intron (NM_001302951, intron 2 of 19)	706.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	4.80656473773191	4.5983203747533	4.80734734653947	4.99640682875011	4.83814667000591	5.01757348785992	4.89233877711943	5.0126170015055	0.226924148970948	0.494740495329283	0.76526357035537
Merged-chr8-86885295-4	chr8	86885192	86885392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030563)	promoter-TSS (NM_030563)	-34.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	6.43344526523352	6.41512733516408	5.89432722996314	6.01906431424906	6.50914425421447	6.50500779930644	6.81337670156466	6.2287748340782	0.484424577064667	0.0580218434536199	0.252959021959402
Merged-chr15-35917523-4	chr15	35917390	35917590	+	912.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 58 of 61)	intron (NM_177151, intron 58 of 61)	20756.0	NM_053071	12864.0	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	3.94146457234257	3.74021954029168	4.03361136631884	4.26805787384382	3.39096832265603	3.54286750982613	3.82739503372868	4.11626872137799	-0.769947347998203	0.13701539950745	0.411624493375292
Merged-chr18-54970985-4	chr18	54970901	54971101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	19179.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	7.63564042637132	7.6612757662224	7.4562558318709	7.56316677277576	7.45508022790379	7.73575156216028	7.59111363404668	7.56252361694319	0.00362248168425522	0.983291736996186	0.993988646239353
Merged-chr19-59350742-3	chr19	59350608	59350808	+	830.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4928.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	3.93683788878706	3.81740487140815	3.8914704520619	3.99343410695355	3.84397474615413	3.69086272876047	3.72766861048536	3.38050317348814	-0.697246302392618	0.145594585889343	0.425250305806328
Merged-chr1-34460259-4	chr1	34460141	34460341	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 1 of 14)	intron (NM_011206, intron 1 of 14)	495.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	5.11682964250669	5.11400623479983	4.68659844903263	5.08970206002669	4.85506557013124	4.82157959822608	4.93156720904523	4.95207959688797	-0.260586172419278	0.423189911661515	0.715135792648678
Merged-chr6-29526631-4	chr6	29526518	29526718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012057)	promoter-TSS (NM_012057)	-7.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	6.49987715972515	6.68349956623696	6.24349709077944	5.96796677102739	6.76343567195751	6.72596889324819	6.77454665703654	6.33704960950665	0.438002778395656	0.0873455202507555	0.322433709466265
Merged-chr5-92667040-4	chr5	92666918	92667118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360020, intron 3 of 9)	intron (NM_001360020, intron 3 of 9)	8109.0	NM_001360018	320696.0	Mm.209991	NM_177230	ENSMUSG00000050050	Ccdc158	4932413O14Rik	coiled-coil domain containing 158	protein-coding	5.81195081025251	5.96603749089393	5.59895815033816	6.15324025472669	6.28870055574882	5.86096084250553	5.83151188502348	5.94850399888402	0.143684970940758	0.601318679407759	0.827079634846541
Merged-chr2-24977263-4	chr2	24977172	24977372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146251, intron 1 of 34)	intron (NM_146251, intron 1 of 34)	1239.0	NM_146251	241274.0	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	6.87393291370959	6.85842924488182	6.31292080605219	7.00062475872868	6.86461128673083	6.56955894647082	6.3774594070514	6.80381292230359	-0.175109525064061	0.474064885116198	0.751607118426792
Merged-chr2-24311405-4	chr2	24311305	24311505	+	919.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20209.0	NM_153077	215274.0	Mm.218750	NM_153077	ENSMUSG00000046845	Il1f10	-	interleukin 1 family, member 10	protein-coding	4.24796147169478	4.11637565045481	4.1066772347507	4.51689712292457	4.53686075883566	4.17960490743319	4.08967998014561	4.28995149330102	0.0504460649328385	0.904493540942083	0.964559678221358
Merged-chr9-114727533-4	chr9	114727470	114727670	+	834.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3633.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	3.83649117858404	3.95767711470024	3.50469331571813	3.6741787396042	3.78741152711418	3.79980047498344	3.66707508314192	3.97325894848865	0.172419187267177	0.712350230201561	0.884862256736535
Merged-chr16-85050626-4	chr16	85050566	85050766	+	814.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 6 of 15)	intron (NM_001198825, intron 6 of 15)	78455.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	3.76860343849028	3.89572519562152	3.71254868990964	3.95282097941486	3.66675994583766	4.04823525517405	3.85930757163018	4.33750178548445	0.419368442660501	0.372268440888073	0.676099595682082
Merged-chr3-101597407-4	chr3	101597302	101597502	+	968.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	7305.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	5.16781668506785	4.73382497904625	5.41264091025509	5.42786158669075	5.4364667992553	5.24161415712446	5.51600832654166	5.51504020462779	0.372338273003356	0.246982408075785	0.558168726560377
Merged-chr14-40894810-4	chr14	40894746	40894946	+	894.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1881.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	4.43743407147922	4.38868254961323	4.47798152470188	4.33101203971649	4.46620329384554	4.18963917189355	4.33503590102411	4.26238515570782	-0.182490633245487	0.630221563194094	0.842667104605937
Merged-chr1-52764240-4	chr1	52764146	52764346	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36888.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	5.44665074358813	5.11654937195738	5.66649150716467	5.54554402303246	5.22581601091018	4.80378851082496	4.98280004211099	5.33270682369711	-0.639178956004059	0.0477343095953993	0.22536356463024
Merged-chr16-49817041-4	chr16	49816932	49817132	+	746.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-38622.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	3.60982083613521	3.81160662194962	3.61026494596283	4.11522216457885	3.99187634847373	3.72700245762456	3.99820838245419	3.82703291880996	0.198447506101357	0.682864450513245	0.870075943025707
Merged-chr1-118391137-2	chr1	118391037	118391237	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 1 of 39)	MTD|LTR|ERVL-MaLR	2079.0	NM_001359334	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	3.25981124117247	3.4776357834868	3.26024954526534	3.22916246141994	3.26253778114235	3.05690239080502	3.07249954281884	2.94816161934727	-0.819808470170421	0.156186456361855	0.442021137941209
Merged-chr3-51216167-2	chr3	51216067	51216267	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-8280.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	3.393007726234	3.49467768417015	3.50105673420387	3.16436607791878	3.19419451127451	3.38995447478466	3.63044970417993	3.21184004284782	-0.0756047983638847	0.889818129639973	0.958707068219514
Merged-chr9-24503294-4	chr9	24503196	24503396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172920)	promoter-TSS (NM_172920)	-156.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	7.98200150814445	8.31550401646242	8.03126209257029	7.8089984257573	8.19541821780388	8.33660669271001	8.44349307275871	7.70620793733431	0.198631113793377	0.345683273234414	0.653998610040464
Merged-chr14-69835475-2	chr14	69835375	69835575	+	821.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4932.0	NM_028560	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	3.24089009931807	3.62209734032525	3.53930353463485	3.3671398779085	3.41053524246454	3.54311392767144	3.71961897278161	3.53730536636702	0.350976797745402	0.488593205821554	0.761377570765248
Merged-chr13-51843990-4	chr13	51843886	51844086	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2689.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	5.65696538787149	5.62065028147892	5.50251339048776	5.42088739995599	5.70389933234852	5.14525807919232	5.29903268682212	5.6780526616253	-0.094620486909269	0.748179629829373	0.90089621355074
Merged-chr7-45510500-4	chr7	45510425	45510625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163662)	promoter-TSS (NM_001163662)	-117.0	NM_001163662	18220.0	Mm.258923	NM_008749	ENSMUSG00000030824	Nucb1	B230337F23Rik|C77483|Calnuc|MTEST82|Nucb	nucleobindin 1	protein-coding	6.16876684310281	6.32585871351125	6.10477648057674	6.1549000000447	6.45930335135591	6.87282235938166	6.2775258305998	6.88589468036715	0.668308753421261	0.00598248611048527	0.054121425884371
Merged-chr9-66856105-3	chr9	66856008	66856208	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 3 of 7)	intron (NM_173413, intron 3 of 7)	-21402.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	4.14137911021932	3.63548918869758	3.54461744426271	4.06303271682447	3.624996156771	3.84118561838403	3.99869836031613	3.82556155007148	-0.152999486337703	0.755949350068158	0.904080158274722
Merged-chr8-125177182-1	chr8	125177082	125177282	+	607.25	f0_balb.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	122987.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	3.34445079240998	3.5724944806772	3.39346561956088	3.23820515629447	2.50264578941019	2.66994161865723	2.71805106283838	2.72417874929787	-4.80031110431029	4.2724635744158e-06	0.000129024049538966
Merged-chr11-53868592-4	chr11	53868474	53868674	+	815.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011396, intron 7 of 9)	ID_B1|SINE|B4	-9318.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	3.6914200544362	4.12300392070166	3.74590854143928	2.80834592529371	4.09493269264326	3.57213958176494	3.87774697708064	3.7954082250291	0.424614634043539	0.5086168095036	0.773588789126549
Merged-chr9-83546027-4	chr9	83545922	83546122	+	813.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2316.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	3.81600182236557	3.52453056003801	4.22225969393978	3.81376419108066	4.07415664035524	3.99026242808053	3.80109569971559	3.91620440406423	0.251331393781723	0.592888601788944	0.822423445862576
Merged-chr19-17252280-1	chr19	17252180	17252380	+	556.0	f0_c57.idr	Intergenic	Intergenic	87225.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	3.02642351726547	2.92646735497019	2.75262865887654	2.88244118989956	3.09567452484952	3.25806591498027	3.38474255233289	3.02527597210662	1.20150548255516	0.0400196964281663	0.201853881240111
Merged-chr2-34777452-12	chr2	34777344	34777544	+	956.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_022310)	TTS (NM_022310)	5354.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	4.09360206052049	4.37297536549487	3.93592340728486	3.45037911579489	4.34261097267255	4.57330434028135	4.12464206990743	4.43838827370856	0.940695024089249	0.0481021052979617	0.226278265478334
Merged-chr2-11530228-3	chr2	11530120	11530320	+	974.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	23709.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	4.05606561229357	4.32986775608407	4.15028736206946	4.16731648752519	3.87640019547437	4.18063514283755	3.88684979826391	4.1920151209469	-0.381677130182425	0.364399291350715	0.669265956462516
Merged-chr2-168583245-4	chr2	168583205	168583405	+	900.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	7060.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	4.38144640035225	4.15774157106495	4.34204085782675	4.29782652988134	4.11861578001924	3.78176042970907	4.43745684016145	4.11743889135064	-0.397707998103599	0.348073815347348	0.65594096271237
Merged-chr4-136224926-3	chr4	136224839	136225039	+	776.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008232, intron 1 of 24)	intron (NM_001008232, intron 1 of 24)	18574.0	NM_001355698	230837.0	Mm.77788	NM_001008232	ENSMUSG00000036995	Asap3	9430088F20Rik|Ddefl1|Gm140|UPLC1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	protein-coding	3.9070043846401	3.86377947225511	3.71186552786835	3.7946011280631	3.88766493242943	3.8830344787147	3.33922150729532	3.54097556464744	-0.389235994060268	0.434834820702355	0.724053330123118
Merged-chr13-73471790-2	chr13	73471690	73471890	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 1 of 13)	MTC|LTR|ERVL-MaLR	4407.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	2.59743665703922	2.81580915260858	2.43929165222079	2.20568511310549	3.28764974469405	2.9184532084826	2.85768121377424	2.98488965677505	2.43351114850676	0.00198444901018297	0.0232465682414237
Merged-chr11-29173525-4	chr11	29173433	29173633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134034, intron 1 of 15)	intron (NM_134034, intron 1 of 15)	626.0	NM_134034	104570.0	Mm.276386	NM_134034	ENSMUSG00000020463	Ppp4r3b	AW011752|AW557776|Smek2|mKIAA1387	protein phosphatase 4 regulatory subunit 3B	protein-coding	5.90014351840986	5.77896630085921	5.7109259907878	5.85573830618888	5.79544500536487	5.66521156865818	5.87111987627017	5.85208348573427	-0.0278280588944773	0.910500394257605	0.96669834733672
Merged-chr5-122103273-4	chr5	122103149	122103349	+	806.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010861, intron 3 of 6)	intron (NM_010861, intron 3 of 6)	2298.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	4.77708473074196	4.63197191698542	3.92342559001345	4.16955241755261	4.15716633242666	4.1052190001198	3.90811575715672	4.18157309179679	-0.790325571558902	0.0849052404040918	0.317009552387896
Merged-chr16-23550572-2	chr16	23550472	23550672	+	845.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29757.0	NM_001359083	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	2.84078627610345	3.16513910023166	3.34421024397934	2.97848048290691	2.93469998794344	3.34964862792768	3.27717958442649	3.39330936917308	0.590568380059666	0.324741707454691	0.63626276514403
Merged-chr4-94979131-4	chr4	94979029	94979229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177239)	promoter-TSS (NM_177239)	-29.0	NM_177239	320713.0	Mm.208868	NM_177239	ENSMUSG00000062627	Mysm1	C130067A03Rik|C530050H10Rik	myb-like, SWIRM and MPN domains 1	protein-coding	8.29592234042886	8.42821392530589	7.97990356704364	8.41420375723321	8.67668070076531	8.61048547142318	8.60485497979735	8.47741818475359	0.375647825197121	0.0255023445614057	0.150541663919083
Merged-chr16-10984844-4	chr16	10984748	10984948	+	864.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	8273.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	4.10403879618672	3.9389796896546	4.01141255174243	4.4222842770634	4.15722304713864	3.80180304095444	3.78758581588538	4.05644711559045	-0.473561516243586	0.299909654971497	0.612178295179839
Merged-chr4-41563566-3	chr4	41563455	41563655	+	996.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027993, intron 1 of 5)	intron (NM_027993, intron 1 of 5)	5972.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	3.25109980675439	3.29810593046805	3.47869793066968	3.28575471656213	4.53355883595915	4.51222652496536	4.20311176278041	4.37459020841136	3.1259858842581	3.82497818764562e-10	2.6570832441488e-08
Merged-chr8-11478601-4	chr8	11478490	11478690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011227)	promoter-TSS (NM_011227)	-91.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	7.96618438038679	8.41568954831146	8.37732309926412	7.87648115662923	8.2212859370868	8.49096338137436	8.56578941082483	8.09912902394099	0.228773398988368	0.259233851028685	0.57109273544942
Merged-chr12-116442797-4	chr12	116442697	116442897	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133762, intron 23 of 28)	intron (NM_133762, intron 23 of 28)	37395.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	4.93830734695418	4.27368617031967	5.55526055317289	5.71747083640644	5.71173171187245	5.59520286415648	5.78054284040171	5.47162865410719	0.711688242827946	0.289079856936394	0.601052028301559
Merged-chr12-56344927-2	chr12	56344827	56345027	+	869.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145442, intron 1 of 8)	intron (NM_145442, intron 1 of 8)	967.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	3.24078828852362	3.12896209982929	3.4569638113128	3.18449095408469	3.03507499508402	3.01901511008631	3.44185709621151	3.45485083045709	-0.00781248653054724	0.989145503295567	0.995649910612823
Merged-chr6-147042781-4	chr6	147042671	147042871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145573)	promoter-TSS (NM_145573)	1.0	NM_145573	232536.0	Mm.46656	NM_145573	ENSMUSG00000040112	Mrps35	MDSO23|MRP-S28|MRPS28	mitochondrial ribosomal protein S35	protein-coding	6.7938661664836	6.6258005742029	6.4799978184649	6.8603450256381	6.8052773721258	6.92870440197397	6.84112791611216	6.6887400338973	0.152005981893485	0.466447494715029	0.746420287776482
Merged-chr5-109751846-4	chr5	109751746	109751946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82296.0	NR_027964	667213.0	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213	zinc finger protein pseudogene	pseudo	6.41453186804222	6.42979235894063	7.28525930074189	6.55927789957621	5.7079259452347	6.21139625272661	6.02342542012907	6.5434661791745	-0.844298751704355	0.00572470590988272	0.0525101600463327
Merged-chr19-4232346-4	chr19	4232214	4232414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132280)	promoter-TSS (NR_132280)	-101.0	NR_132280	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	5.59421389627732	5.51709825925895	5.87754576064688	5.49153989212402	5.55017740230512	5.63188427590225	5.30612877889693	5.76342742531271	-0.0789777876940523	0.778485324672706	0.913745806756274
Merged-chr10-78137330-4	chr10	78137226	78137426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32442.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	6.6628505924641	7.18248392253888	6.31145425727354	5.99795833252223	7.17276421181755	6.94406133403872	6.70424820399056	6.68964735615758	0.402316595998729	0.176191763772824	0.471206220311323
Merged-chr5-3596632-4	chr5	3596538	3596738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172991)	promoter-TSS (NM_172991)	-91.0	NM_172991	269623.0	Mm.38014	NM_172991	ENSMUSG00000040302	Rbm48	AW548102|C030048B08Rik	RNA binding motif protein 48	protein-coding	5.72473945506393	5.78017462131042	5.49688524886711	5.93665178978315	5.9172147407785	6.11684090873524	6.18662733969446	6.08362052842479	0.494827270063049	0.0539322220809621	0.242435871676533
Merged-chr5-25223575-4	chr5	25223480	25223680	+	911.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144908, intron 1 of 11)	intron (NM_144908, intron 1 of 11)	708.0	NM_144908	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	4.41568957313006	4.2783813469369	4.58963614135666	4.74701316475675	4.54190184073409	4.68067189743488	4.78880451771972	4.90681489779542	0.420404670403788	0.259260436292744	0.571096665653079
Merged-chr17-48039676-3	chr17	48039560	48039760	+	844.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1367.0	NM_029689	76651.0	Mm.76918	NM_029689	ENSMUSG00000094928	1700122O11Rik	-	RIKEN cDNA 1700122O11 gene	protein-coding	3.85702842795037	3.94275452591706	4.12183954683196	3.6168221935525	3.95159639358302	3.50773349147434	3.68707679894495	3.75354205724548	-0.418769778399456	0.393460567295756	0.692576805225404
Merged-chr11-117912896-4	chr11	117912797	117912997	+	905.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39371.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	4.64395885583484	4.74778818246254	4.07990527840727	4.44031061618985	4.63872244177373	4.65658599960949	4.73137479693343	4.67921280774154	0.381346059037907	0.310427306810497	0.6225601620496
Merged-chr8-126537487-4	chr8	126537386	126537586	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55950.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.15077070836107	5.02095998885173	4.73194395518887	5.2241963048446	4.72305786231465	4.78127741324338	4.93514554092296	5.05557052802137	-0.361649769869257	0.280654064329334	0.592762103347013
Merged-chr15-55121204-4	chr15	55121118	55121318	+	956.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145470, intron 1 of 8)	intron (NM_145470, intron 1 of 8)	-7636.0	NR_045093	100503794.0	Mm.360519	NR_045093	ENSMUSG00000053749	Gm9920	-	predicted gene 9920	ncRNA	4.93733130989798	4.74135649778689	4.83991340798078	4.92151766179987	4.30963930085959	4.75052167134876	4.59549145049222	4.24105508708698	-0.834534941065521	0.022265449694904	0.137573382522524
Merged-chr11-51816024-4	chr11	51815909	51816109	+	809.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199299, exon 12 of 12)	3' UTR (NM_199299, exon 12 of 12)	41472.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	3.89449554640815	3.51272848714798	3.69812970470712	3.50296087180684	3.87622731432361	3.87010671120272	3.8318270559573	3.5852191133626	0.447287388816927	0.345215362546315	0.653512880071387
Merged-chr11-106319056-6	chr11	106318980	106319180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133199, exon 24 of 24)	3' UTR (NM_133199, exon 24 of 24)	-4518.0	NM_001313939	15985.0	Mm.2987	NM_008339	ENSMUSG00000040592	Cd79b	B29|Ig-beta|Igb|Igbeta	CD79B antigen	protein-coding	5.38902825496539	5.01139955790321	5.25709928128617	4.47353261457039	4.71317834781948	5.07941391040326	4.87969319606441	5.07289988145005	-0.240844984029404	0.526900401486901	0.784003266334357
Merged-chr12-73908512-4	chr12	73908392	73908592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010431, intron 1 of 14)	CpG	625.0	NM_001313919	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	5.64094192881151	5.54619618666267	6.18975852858871	5.765993437803	5.95172158929283	5.79181396456591	6.20973403532126	5.55300483289343	0.155798688984853	0.593515869504101	0.82285233379688
Merged-chr2-168206443-4	chr2	168206293	168206493	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310086, intron 1 of 4)	CpG	719.0	NM_009628	11538.0	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	3.447666237743	3.43635506796674	3.56418875758406	3.43857353469885	3.93254240411603	3.43511498186257	3.75268722952592	3.85798823484332	0.924514904266347	0.0566456756162203	0.249272491170754
Merged-chr8-83089746-4	chr8	83089617	83089817	+	870.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177378, exon 7 of 7)	3' UTR (NM_177378, exon 7 of 7)	-75635.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	3.8655200069159	3.71689382951944	4.46717915165319	4.1431587698006	3.62499957347545	3.76285906942685	3.84989436099853	3.7003818246606	-0.982792013087177	0.0432512976069962	0.211641891107403
Merged-chr2-129625211-4	chr2	129625107	129625307	+	963.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	29745.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	4.27375875914554	3.68192097078607	4.22392210434082	4.20469324981546	4.79191148723145	4.79455983678043	4.63572383396926	5.1136016659893	1.62206889505812	8.52842073834383e-05	0.00177862425940397
Merged-chr10-127165814-3	chr10	127165674	127165874	+	876.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001244618)	promoter-TSS (NM_001244618)	-57.0	NM_027739	14421.0	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	3.32297474340206	3.36410871166531	3.43859944808575	3.47494941077711	3.48425152684791	3.43590562503898	3.31171676248613	3.63978181771196	0.227634124862225	0.652804251276873	0.854764223296605
Merged-chr14-8214451-4	chr14	8214346	8214546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305936)	promoter-TSS (NM_001305936)	-56.0	NM_001305936	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	5.66917790097359	5.5774451696121	5.93747347866675	5.43237075210602	5.81056156934448	5.37385338238871	5.53865321281991	5.3587054702594	-0.180416332509496	0.540464907105604	0.792791916938885
Merged-chr2-84382206-4	chr2	84382099	84382299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018782, intron 2 of 15)	intron (NM_018782, intron 2 of 15)	43067.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	6.57654983355303	6.6665990325224	6.16436083261379	7.06181735263448	5.59348783781229	6.1457983852812	5.73124013998977	5.78402492106323	-1.29781425836284	4.96271109368622e-06	0.000147070309410157
Merged-chr9-65294215-4	chr9	65294109	65294309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011802)	promoter-TSS (NM_011802)	-51.0	NM_011802	270166.0	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	7.31100989957414	7.20532428268362	6.79172746251937	6.73463163169004	7.33426169874329	7.71964149781189	7.39151927887326	7.01113019227854	0.487413423885037	0.0398280050755774	0.201215737282995
Merged-chr4-53409718-3	chr4	53409604	53409804	+	585.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30709.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	3.73524831968805	3.73410459829969	3.47740940871364	3.11440113197051	3.33519559617111	3.90460072700004	3.51872153847247	3.08115280149214	-0.147771674226635	0.805744783549262	0.925287707085054
Merged-chr8-84966154-4	chr8	84966051	84966251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027187)	promoter-TSS (NM_027187)	-140.0	NM_027187	69724.0	Mm.182470	NM_027187	ENSMUSG00000052926	Rnaseh2a	2400006P09Rik|RNASEHI|RNHIA|RNHL	ribonuclease H2, large subunit	protein-coding	7.56640667194843	7.57585656565041	7.62771249136803	7.57374030110133	7.48911672076541	7.33318381474847	7.50392620346819	7.43309532447049	-0.186499277216249	0.266551780365985	0.578212573512646
Merged-chr9-107640358-4	chr9	107640286	107640486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5044.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	7.55280327926966	7.31660734658566	7.34094051963607	7.73991843901815	7.55306496470146	7.51838086969311	7.65147589270771	7.55776546313475	0.0790163011778367	0.673661352301301	0.865848986388019
Merged-chr4-148448454-4	chr4	148448326	148448526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020009)	promoter-TSS (NM_020009)	-156.0	NM_020009	56717.0	Mm.21158	NM_020009	ENSMUSG00000028991	Mtor	2610315D21Rik|AI327068|FRAP|FRAP2|Frap1|RAFT1|RAPT1|flat	mechanistic target of rapamycin kinase	protein-coding	8.32841974618096	8.46955920128907	8.2267619962267	8.22115786654134	8.41866975403061	8.49074462782865	8.34974535628806	8.31881554636312	0.105096884817855	0.498456842344848	0.767631774426384
Merged-chr11-93886062-1	chr11	93885962	93886162	+	1000.0	f0_c57.idr	promoter-TSS (NM_134012)	promoter-TSS (NM_134012)	-145.0	NM_001346525	103537.0	Mm.210334	NM_134012	ENSMUSG00000059474	Mbtd1	AA408199|AI194990|hemp	mbt domain containing 1	protein-coding	6.63549356791217	7.00791778101392	6.63666370306351	6.55326696248018	6.39641040851663	6.85936949481416	6.79113278745064	6.87383944697711	0.0252155885058436	0.913369609569962	0.967524531047837
Merged-chr3-95950875-2	chr3	95950787	95950987	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	CpG	21630.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	5.44236157917418	5.6369357926625	5.49975039812306	5.28226531685683	5.46147915084452	5.70093958649416	5.23151353394945	5.72239511427827	0.13519839141636	0.640488394117573	0.848194202693214
Merged-chr2-181287667-5	chr2	181287603	181287803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 1 of 9)	CpG	263.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	5.86699490914553	5.75762928392721	5.57423890380487	5.35194793822024	6.35745923360935	6.11391739338371	6.37118326860309	6.21548213202739	1.01776302719066	7.00636414668523e-05	0.00150303192765795
Merged-chr7-80045580-2	chr7	80045479	80045679	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	19351.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	2.7240618305791	3.04794624087429	2.9331616230483	2.83622613008142	3.1255450102991	3.16686049032564	3.20728960400524	2.99463253808833	0.983120813395005	0.0936497342796836	0.33476244870998
Merged-chr7-28312106-4	chr7	28312026	28312226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025616)	promoter-TSS (NM_025616)	-80.0	NM_025616	66525.0	Mm.167913	NM_025616	ENSMUSG00000003438	Timm50	2810403L02Rik|AU015082|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding	7.68036892625022	7.74785075203867	7.39318368716309	7.41813133770125	7.46418772236882	7.68650728199022	7.66794529923506	7.19092444584836	-0.066593656384509	0.739237893012765	0.897216910233871
Merged-chr17-24549930-4	chr17	24549810	24550010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013630)	promoter-TSS (NM_013630)	-40.0	NM_013630	18763.0	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystin 1, transient receptor poteintial channel interacting	protein-coding	8.86884523724334	9.0164840721029	8.55088896713252	8.57944775103252	8.67285868137101	8.87059962971917	8.64027596565965	8.48615991373441	-0.116898550981439	0.511718264800346	0.775628687274991
Merged-chr10-80033339-4	chr10	80033230	80033430	+	961.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	6329.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	6.39895985526644	6.33183382410426	6.3838284389105	6.59457256081558	6.10010827182672	5.74074659469483	5.25548008711727	5.72968067733703	-1.05688044097276	0.000166614611013142	0.00312218788458465
Merged-chr8-84659347-2	chr8	84659232	84659432	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3520.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	3.44966402709444	3.35480692296041	3.17461716575337	3.00046611823442	3.23250326740133	3.40589005460098	3.10131346548732	3.17303418858245	-0.0567656788197597	0.920112101172819	0.970409558278764
Merged-chr15-13088819-2	chr15	13088724	13088924	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007666, intron 2 of 11)	MER119|DNA|hAT-Charlie	84851.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	3.03553026950364	3.46312348955919	2.96683183173008	3.13875717530023	3.22253503379917	3.21230333092967	3.51714091448159	3.2221827069363	0.485458491123481	0.397826470754915	0.696054529321669
Merged-chr9-90272161-2	chr9	90272061	90272261	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1392.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	2.49248142521558	2.62010823166028	2.56707555768426	2.5437312421236	2.88308974180882	2.99740219029807	2.75832252535594	2.88570327941993	1.57642487146266	0.0137423300339362	0.0986849585840947
Merged-chr12-69447426-4	chr12	69447343	69447543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28107.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	7.34227394227156	7.49107163177207	7.15881841425751	7.24732305528283	7.34054127102713	7.25160803455857	7.06322583279296	7.53429052972122	-0.00649826821847788	0.973535355173545	0.990540947237557
Merged-chr11-77793400-4	chr11	77793296	77793496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	-7902.0	NM_001291214	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	6.94543538031592	7.09874701410123	6.94665014461044	6.73244625926568	6.92341275633798	6.94713613810371	6.61436575335083	6.65940845663424	-0.183169708278321	0.386723811458228	0.687797608117846
Merged-chr2-160353956-4	chr2	160353837	160354037	+	982.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13128.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	5.61340515868073	5.4920539939731	5.0381073852202	5.42873138672376	5.14300898976564	5.02283958445812	5.01396626631223	5.26724567956881	-0.540084270855257	0.0799768990000069	0.306343485292816
Merged-chr3-154318016-3	chr3	154317920	154318120	+	760.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010713, intron 6 of 8)	intron (NM_010713, intron 6 of 8)	12540.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	3.39858218641665	3.17546729732474	3.1771065671702	3.28516942593549	3.13901957364286	3.22501995801463	3.33353996909583	3.17554646222706	-0.170382211680833	0.751922897252586	0.902329068825205
Merged-chr7-98836764-4	chr7	98836676	98836876	+	863.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285792, intron 2 of 6)	intron (NM_001285792, intron 2 of 6)	1664.0	NM_001285792	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	4.10386191678131	3.71895020035891	4.104503051153	4.21583722595183	3.56894837063261	3.87353370257474	3.94840677299384	4.18673990475721	-0.401342529049002	0.398596652586292	0.696793179038619
Merged-chr1-13660001-4	chr1	13659911	13660111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145381, intron 1 of 6)	B1F1|SINE|Alu	498.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	5.10932328146981	5.37170604206095	5.1441918868566	5.1201451116413	5.15992566467881	5.28592544776488	5.30459391909316	5.53985259163125	0.247518353352645	0.403979606075796	0.701206012163242
Merged-chr10-61375320-4	chr10	61375211	61375411	+	985.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	8212.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	4.39725591473282	4.41384200494742	3.8463260242134	4.23992463339498	4.48714784152233	4.14581554440438	4.69676950153965	4.12334598804033	0.34703028854135	0.422897552296047	0.714938134013999
Merged-chr15-25279954-2	chr15	25279854	25280054	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	133810.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	2.77942670368254	3.12373282677613	2.91640598348123	2.70727027017107	3.02048812657587	3.15163490633275	3.19268534102106	2.97836441950235	0.851071221739635	0.15820847181981	0.445101416370722
Merged-chr16-96192275-4	chr16	96192148	96192348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001492)	promoter-TSS (NM_001001492)	9.0	NM_001001492	385668.0	Mm.24626	NM_001001492	ENSMUSG00000045275	Lca5l	4921526F01Rik|Lcca5l	Leber congenital amaurosis 5-like	protein-coding	7.03988544637601	7.03446821378815	6.76635931992365	7.10472662452418	7.27532256621796	7.20558488885021	7.30960404805735	7.03615158086612	0.289940350620867	0.13475812919267	0.408602721099257
Merged-chr11-67085655-4	chr11	67085550	67085750	+	789.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099635, intron 10 of 40)	intron (NM_001099635, intron 10 of 40)	7350.0	NM_001099635	17883.0	Mm.340090	NM_001099635	ENSMUSG00000020908	Myh3	MyHC-emb|Myhs-e|Myhse	myosin, heavy polypeptide 3, skeletal muscle, embryonic	protein-coding	3.15166868779733	3.47717305441678	3.28519883865278	3.44805737985975	3.58667288275057	3.57812789717637	3.69702149325176	3.51529696465526	0.78996342232198	0.123104367854504	0.389007542303628
Merged-chr9-57638080-4	chr9	57637974	57638174	+	945.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	7579.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	5.39792187575108	4.90104177843882	5.34450648493594	5.43808375651373	5.19769754449803	4.84697619951977	4.81696324512659	5.36819901054846	-0.385714243405403	0.253775077591606	0.565032649092237
Merged-chr4-45393843-2	chr4	45393743	45393943	+	874.4166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14923.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	3.2931152744334	3.45649964800688	3.47810227030859	4.04969082413295	3.77202121122514	3.59277916599324	3.40733000869464	3.47630546658365	-0.14920456659134	0.792559814026831	0.919627897475503
Merged-chr16-84967229-4	chr16	84967132	84967332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 13 of 15)	intron (NM_001198825, intron 13 of 15)	-4979.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	8.37512330748944	8.52030287840504	8.39235816002019	8.60962889622596	8.30810966780639	8.28782111467592	8.44924707695306	8.20646438759898	-0.212911907469957	0.174217689688827	0.468550678145071
Merged-chr17-35910142-4	chr17	35910049	35910249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142745)	promoter-TSS (NM_001142745)	-74.0	NM_001357865	73242.0	Mm.273155	NM_028476	ENSMUSG00000024426	Atat1	0610011P08Rik|2610008K08Rik|2610110G12Rik|3110080J08Rik|Mec17|TAT	alpha tubulin acetyltransferase 1	protein-coding	8.0392387724781	8.36734076716924	7.87912835929723	7.74084890085105	8.20474112193895	8.10091125861882	7.91371482104275	7.96758169277583	0.0385623802052453	0.8441796129375	0.94088019607581
Merged-chr11-110372378-2	chr11	110372267	110372467	+	794.5	f0_balb.idr|f0_c57.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-26735.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	3.64488108822271	3.30329552113869	3.47379730474832	3.48953150027886	3.67944981169253	3.86882459579947	3.91406228300097	3.79465352358214	1.02222814763737	0.031531542967671	0.173084267517225
Merged-chr7-88318751-4	chr7	88318685	88318885	+	899.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	40700.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	4.24134130543847	4.06424761279977	4.24200930194064	4.05556544858895	4.01592635347861	4.28008035855482	4.09093803779447	3.90428743400437	-0.18233075179112	0.660111824867595	0.858724170764591
Merged-chr7-80582332-4	chr7	80582232	80582432	+	864.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-47213.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	3.52855422527459	3.60562561133315	3.6757311162287	3.41245605977343	4.8941276407239	4.38279308039878	4.81410981271118	5.12568520884967	3.26583927233426	3.02946386307641e-13	3.59356903380028e-11
Merged-chr3-28171973-2	chr3	28171873	28172073	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91241.0	NM_001163007	665113.0	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	3.09691310447276	3.04004157337075	3.09731668087395	2.80948141731267	3.1639264833284	3.01706093989198	3.02660316706308	3.20750038150455	0.426108735242197	0.461232382515153	0.743056442024124
Merged-chr4-131921689-3	chr4	131921598	131921798	+	913.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201367)	promoter-TSS (NM_001201367)	-73.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	3.93661293510262	4.48721852648915	4.29195536829875	3.91448313439655	4.13778172220414	3.70856207161998	3.57692127160337	3.93488009832681	-0.831835762143094	0.0938531886502206	0.335191977668542
Merged-chr18-42009875-1	chr18	42009775	42009975	+	868.0	f0_balb.idr	Intergenic	MER20B|DNA|hAT-Charlie	-10826.0	NM_001033426	332309.0	Mm.240520	NM_001033426	ENSMUSG00000073574	Grxcr2	Gm851	glutaredoxin, cysteine rich 2	protein-coding	3.70639020823741	3.61037241652135	3.70691900318658	3.99841635847283	3.38660990549916	3.47403033266071	3.69162657130156	3.70478038992069	-0.658049798332629	0.187426215529742	0.485827042796487
Merged-chr11-115198991-4	chr11	115198824	115199024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 3 of 9)	intron (NM_001033393, intron 3 of 9)	11437.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	5.50597064649964	5.99043107432635	5.53672751587789	5.17479022947337	5.96481571903137	6.11231416767615	5.84170415548869	6.15015395994581	0.728651831095259	0.0131665319353466	0.0957926400775782
Merged-chr2-24587956-4	chr2	24587833	24588033	+	843.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112334.0	NM_011040	18510.0	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	3.73331666098524	3.49840343572431	3.63221545473554	3.72192878928115	3.5849326617696	3.30979444791871	3.66882967722548	3.86999226050934	-0.0873464343364264	0.861204839677422	0.947574515069552
Merged-chr12-84061100-3	chr12	84061006	84061206	+	786.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001346701)	TTS (NM_001346701)	-8218.0	NM_001347417	217698.0	Mm.484019	NM_145444	ENSMUSG00000042540	Acot5	BC016076|PTE-Ic	acyl-CoA thioesterase 5	protein-coding	3.67551660628586	3.53899870995903	3.56461347289414	3.73189920718427	3.4361109221361	4.04095871290205	3.85629480809629	3.67395027611605	0.384405735491146	0.436183233693627	0.72505818409614
Merged-chr9-102779710-4	chr9	102779603	102779803	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40055.0	NR_033301	434510.0	Mm.387937	NM_001034892	ENSMUSG00000093812	Gm5627	EG434510	predicted gene 5627	ncRNA	4.37375670038571	4.64320905886987	4.33280094079786	4.07505546571622	3.92845208585759	4.17526537247775	4.27037440938833	4.24253099990664	-0.519038465006119	0.220521158960227	0.528451996377299
Merged-chr15-95795369-4	chr15	95795250	95795450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	4507.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	6.69310773912849	6.56019023508881	6.43544894115724	6.61722627844414	6.68310157869737	6.68182121830068	6.74458773639369	6.50067304948749	0.106980462658222	0.603973348110216	0.828350269166784
Merged-chr9-72533075-2	chr9	72532976	72533176	+	954.2000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033536, intron 1 of 8)	intron (NM_001033536, intron 1 of 8)	836.0	NM_001033536	319758.0	Mm.32081	NM_001033536	ENSMUSG00000037674	Rfx7	2510005N23Rik|9930116O05Rik|D130086K05Rik|Rfxdc2	regulatory factor X, 7	protein-coding	3.01835786818782	3.28132599813416	3.45751846696917	3.32880206544953	3.58122774668349	3.57283868368618	3.3898285103672	3.45556331095791	0.75548824702441	0.153613967886219	0.438382086193301
Merged-chr2-30436354-3	chr2	30436249	30436449	+	732.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138748, intron 5 of 9)	intron (NM_138748, intron 5 of 9)	20299.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	3.68977622044715	3.76794823417661	3.69029158441565	3.41764606138322	3.69334511762614	3.86227464696683	3.67538436854374	3.8849971484701	0.43871352788758	0.351358173569589	0.658808615509455
Merged-chr2-52905271-3	chr2	52905180	52905380	+	770.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	MLT1A|LTR|ERVL-MaLR	47412.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	2.89305893589745	2.93569560983647	3.09175602713793	3.05082597979445	3.67708717674845	3.20283045720049	3.08073213185678	3.09021465966122	1.13978679628602	0.0573946001635608	0.251294226797201
Merged-chr18-39666365-3	chr18	39666269	39666469	+	799.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107128.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	4.37015985861898	4.5082041951437	4.69732359553892	4.76649203046618	3.7199889770892	3.80274260941214	4.12716779192445	3.98613368023024	-1.7856078132315	4.05020464216728e-05	0.000943318761296467
Merged-chr11-60727285-4	chr11	60727198	60727398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302207)	promoter-TSS (NM_001302207)	-35.0	NM_001302207	14248.0	Mm.339755	NM_022009	ENSMUSG00000002812	Flii	3632430F08Rik|Fliih	flightless I actin binding protein	protein-coding	6.03467897650031	6.09797720567806	5.54897045510597	5.88330487141139	6.07049451480353	6.27285001164178	6.20047092603424	6.17219259018137	0.415946609935527	0.0949331921544462	0.337167022691861
Merged-chr15-57907610-2	chr15	57907510	57907710	+	880.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-4589.0	NM_001081396	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	2.86922499726005	2.77400731482641	2.86958461199525	2.78388068300686	2.62903755891888	2.77554284540523	2.85918353524984	3.19398842323863	0.250931906793105	0.694466082993417	0.87596715638729
Merged-chr17-12741359-4	chr17	12741344	12741544	+	812.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027773, intron 1 of 2)	CpG	133.0	NR_027784	104103.0	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	3.33187924903292	3.41947866131678	3.26967924519466	3.18169627985143	3.5753601535262	3.62079737997016	3.48984625178505	3.70002899958474	1.0289902030604	0.0382847153183559	0.196132701284385
Merged-chr4-41358842-4	chr4	41358751	41358951	+	968.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355508, intron 1 of 6)	intron (NM_001355508, intron 1 of 6)	6888.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	5.22150102149632	5.23675822114016	5.19161438654792	5.07577794546209	5.22174672437093	5.39471077406917	4.92890459929193	4.94910074366969	-0.0672916962643404	0.82799065018998	0.934007956519098
Merged-chr12-84176859-4	chr12	84176752	84176952	+	929.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	17163.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	4.8038768678376	5.09455394305848	4.33262305938761	4.6270035072465	4.96636690851843	4.90366560289551	4.54773884296765	4.56556092298845	0.0467955889930144	0.903186703698906	0.964174003555599
Merged-chr10-96620942-4	chr10	96620781	96620981	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007569, exon 2 of 2)	3' UTR (NM_007569, exon 2 of 2)	3880.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	4.76963157763489	4.76317540988777	4.58235866788489	4.48920837836887	4.67175852985525	4.83240432718977	4.47831342464212	4.25975051775343	-0.149135285773192	0.689488430493312	0.873418603891305
Merged-chr3-15876910-1	chr3	15876810	15877010	+	588.5	f0_balb.idr	Intergenic	Lx4A|LINE|L1	-28423.0	NM_001173459	100038947.0	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	3.48485792319936	3.25417738559312	3.1754307156059	3.09081274368544	3.2655936480782	2.87506666743652	2.83783505729355	3.28556573027649	-0.648402230986218	0.300736079837943	0.612615171792683
Merged-chr1-59237287-4	chr1	59237202	59237402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028717)	promoter-TSS (NM_028717)	-71.0	NM_028717	74018.0	Mm.272078	NM_028717	ENSMUSG00000026024	Als2	3222402C23Rik|9430073A21Rik|Als2cr6|Alsin|mKIAA1563	alsin Rho guanine nucleotide exchange factor	protein-coding	7.78387709208732	7.93147234631322	7.3753836149001	7.4752547659196	8.0571978394892	8.1020750183354	7.73959287529494	7.86250045331107	0.380073674011079	0.0564394269537064	0.248780156746214
Merged-chr14-118925130-4	chr14	118925015	118925215	+	842.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360412)	promoter-TSS (NM_001360412)	355.0	NM_025943	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	3.92638653214083	3.96421657722811	4.45646492693666	4.43318319403093	4.10817361426244	3.93433424847571	4.06392355884459	4.25922038037612	-0.333135406750584	0.450241051940813	0.735231557072919
Merged-chr8-86870931-3	chr8	86870834	86871034	+	914.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	MTE2a|LTR|ERVL-MaLR	14324.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	3.84114180261941	3.60202987525142	3.47761358561783	3.59000017473471	3.80344369016136	3.5926314410836	3.68292490345736	3.59063496700231	0.142133733482673	0.765747261631278	0.908357650317684
Merged-chr8-121578882-4	chr8	121578811	121579011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133765)	promoter-TSS (NM_133765)	-105.0	NM_133765	76454.0	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	7.52977078247684	7.743527278295	7.60331721761015	6.87564363451728	7.8485322767074	7.94499831051452	7.86765157500137	7.82237130432005	0.53074747492606	0.0173737532343442	0.116390247667519
Merged-chr7-100428525-4	chr7	100428428	100428628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 20 of 32)	intron (NM_001017985, intron 20 of 32)	-44463.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	5.84292223037498	5.96593238528842	5.95736067828323	6.16751889887211	5.63240393204184	5.70073457765562	5.76618870580944	6.07681767183182	-0.324790073078202	0.211790621858322	0.516586351389811
Merged-chr12-101759939-4	chr12	101759837	101760037	+	948.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361987, intron 9 of 10)	intron (NM_001361987, intron 9 of 10)	-41414.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	4.32296811899506	4.14719928717983	4.17449746328829	4.20423379655829	4.65238662025126	4.63157126867273	4.59481906025703	4.96919694802008	1.14810021859785	0.0017625628111823	0.0212042252265103
Merged-chr1-152685757-2	chr1	152685657	152685857	+	930.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-60540.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	3.61739995633062	3.42629837613952	3.51822150493622	3.09372877744774	3.24271379172368	3.52624045515412	3.21799977951235	3.51613969177316	-0.132430823284522	0.810884036548855	0.926854276252049
Merged-chr17-91284144-4	chr17	91284040	91284240	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-191338.0	NM_020252	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	5.25115153083339	4.88811618024554	5.56217980114479	5.65829941970917	5.53839646538401	4.84370115818975	5.45715077321745	5.55822576506746	0.00371041669187653	0.991601151872012	0.996772106195311
Merged-chr1-161463921-3	chr1	161463816	161464016	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30741.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	4.97394930883688	4.62960703486926	4.9450375939961	4.91200242487172	4.4724291886985	4.36623553376126	4.16600614552915	4.06763329822182	-1.31306525746649	0.000734285282463167	0.0105183522077774
Merged-chr2-91710465-4	chr2	91710360	91710560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178724)	promoter-TSS (NM_178724)	132.0	NM_145528	51897.0	Mm.28492	NM_145528	ENSMUSG00000027244	Atg13	1110053A20Rik|D2Ertd391e|Harbi1	autophagy related 13	protein-coding	6.11413500514109	6.30724874436182	6.57537091791187	6.37441451231053	6.42059076225686	6.29144897163046	6.28060038201605	6.08947075845801	-0.108128147814992	0.642823671045049	0.84935134647267
Merged-chr16-21701994-3	chr16	21701898	21702098	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-7333.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	4.63005961385108	4.80213251266794	4.89793002945121	4.70619978479971	4.41027234666156	4.0903689633074	4.12101743253622	4.23976760084868	-1.21698668450402	0.0017526099559471	0.0211152715054771
Merged-chr14-103472409-1	chr14	103472309	103472509	+	605.0	f0_c57.idr	Intergenic	Intergenic	-40932.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	3.19332103596869	2.86113540474136	2.80208490675124	2.98190104504848	3.25779267961013	3.24838065962914	3.06446900071111	3.44652519878452	1.14457137617051	0.0511664589545773	0.234723986976531
Merged-chr3-96066223-3	chr3	96066077	96066277	+	667.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-7722.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	3.51862782065793	3.56225903046374	3.08449215740077	3.54324247850814	3.56217403456256	3.52258274681071	3.45178787322708	3.517144484823	0.221279718398025	0.674259413875713	0.866093506924868
Merged-chr6-129740467-3	chr6	129740344	129740544	+	870.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177155)	promoter-TSS (NM_177155)	40.0	NM_177155	320407.0	Mm.123265	NM_177155	ENSMUSG00000043932	Klri2	A530090P03Rik	killer cell lectin-like receptor family I member 2	protein-coding	3.9218009508447	3.6754329505559	3.29473431744217	3.98451482580749	3.17598638031315	3.47524778522477	3.57942976774564	3.48042101854719	-1.04653180488165	0.0589652372833653	0.255748377587756
Merged-chr18-73812797-4	chr18	73812688	73812888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145494, intron 1 of 15)	B4A|SINE|B4	2604.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	6.2490575402616	6.19086988127336	6.88073402067144	6.85008053436917	5.47134363198914	5.63377645166657	5.75283758119431	5.99976287099025	-1.34085310178051	3.29120022336705e-06	0.000102298838733207
Merged-chr1-152554014-2	chr1	152553914	152554114	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 6 of 17)	intron (NM_016846, intron 6 of 17)	71203.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.63403959315415	5.67585461625223	5.66109347528093	5.5662536878512	5.62285988884996	5.72951397703345	5.49739725993185	6.08888281853462	0.198952992351052	0.466133041317321	0.74629927630325
Merged-chr16-93918510-4	chr16	93918415	93918615	+	973.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019500)	TTS (NM_019500)	11052.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	5.22712674114464	5.01575359705089	4.72049571897931	4.66725385254497	5.69806662508186	5.58395177713774	5.8623161678088	5.58798344114939	1.40847643125993	3.64444834149378e-06	0.000112055373001808
Merged-chr15-81067272-3	chr15	81067181	81067381	+	918.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	37766.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	3.55065854850945	3.47308979059372	3.65619558132716	3.7756445385042	3.64112794817579	3.42353433631291	3.53751156396237	3.65409667707486	-0.183369288473633	0.708912573995548	0.883181434949927
Merged-chr6-47595111-4	chr6	47595013	47595213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146689)	promoter-TSS (NM_001146689)	-83.0	NM_007971	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	8.45014767152938	8.4625478709588	8.26763679405039	8.4294048905389	8.40465129640087	8.34207464138025	8.44204970708706	8.44602493190309	0.00377631392084737	0.979705370719733	0.992731846856856
Merged-chr3-146779108-3	chr3	146779009	146779209	+	870.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011100, intron 1 of 9)	intron (NM_011100, intron 1 of 9)	2307.0	NM_001164200	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	3.87345260519667	3.6290899010652	4.27843938940558	3.81890185561283	3.60600318331157	3.84282735654932	3.65304558553213	3.35271462351958	-0.877339798696674	0.0867629061474866	0.321232608409464
Merged-chr2-14165802-4	chr2	14165674	14165874	+	839.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-8750.0	NM_001081310	625286.0	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	4.50844239515934	4.41367324559265	4.61735790020238	4.18441959269231	4.1743254930728	4.18161844207527	4.2385867217028	4.46769030119839	-0.382886420313973	0.338147192082368	0.647796331490298
Merged-chr7-28732912-4	chr7	28732813	28733013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310687, intron 3 of 6)	intron (NM_001310687, intron 3 of 6)	7908.0	NM_001360254	24030.0	Mm.358650	NM_011885	ENSMUSG00000045948	Mrps12	AI327385|Rpms12|rps12	mitochondrial ribosomal protein S12	protein-coding	7.0015696162929	7.04588547062143	6.80073796551985	7.24186129413941	7.01868242500159	6.93285689321732	7.0745546072067	6.93393463158161	-0.074714783748156	0.709310597835731	0.883460821784656
Merged-chr8-25277300-2	chr8	25277200	25277400	+	644.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28970.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	3.04028983972766	2.92972528718744	2.98365304216352	2.74602790681008	3.18999326745514	2.83196832710605	2.78707943400735	2.79438074129235	-0.00473303656058124	0.994053423624852	0.997739983081298
Merged-chr1-144004943-4	chr1	144004841	144005041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009061)	promoter-TSS (NM_009061)	-792.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	6.21061288015424	6.24671520250639	5.91355937160497	6.28692180431709	6.09236948896693	5.93945712776019	6.12202953197817	6.22607744619744	-0.127843169705486	0.591013595002922	0.821411686140442
Merged-chr2-69723055-7	chr2	69722981	69723181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081086)	promoter-TSS (NM_001081086)	-7.0	NM_001081086	228005.0	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	6.37062017132467	6.06893148845054	6.48791640407854	5.93844357902789	6.1655234211522	6.61416806849004	6.33906507259104	6.18014341828248	0.169574553316251	0.508741463181716	0.773688330224155
Merged-chr2-152293955-4	chr2	152293856	152294056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024196)	promoter-TSS (NM_024196)	84.0	NM_024196	67231.0	Mm.288733	NM_024196	ENSMUSG00000027465	Tbc1d20	1110028I04Rik|2810442O16Rik|AI414693|bs	TBC1 domain family, member 20	protein-coding	7.49639761354328	7.61603017188677	7.87300325414542	7.45983304165589	7.11789514784693	7.74724654178603	7.29187102188278	7.57361991049705	-0.224264195006076	0.2920455782342	0.604488172040016
Merged-chr13-47105978-4	chr13	47105881	47106081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025900, intron 1 of 10)	CpG	240.0	NM_025900	110052.0	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	6.66071669315433	6.99422370651033	6.69326448535335	6.2911660464013	7.2862572867608	7.23045652966024	6.84513075126872	6.82065889847029	0.552221802723194	0.0233937850022394	0.141968607629952
Merged-chr5-137778830-4	chr5	137778675	137778875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356989)	promoter-TSS (NM_001356989)	-129.0	NM_001356989	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	6.1992201693886	6.2359370318629	5.82733654943029	6.21854861608126	6.20004923380052	6.31684902661485	5.84752673735278	5.9446397359577	-0.0696737001064197	0.783042671892108	0.915463993932762
Merged-chr17-34151179-2	chr17	34151073	34151273	+	988.75	f0_balb.idr|f1_balb.idr	TTS (NM_010388)	TTS (NM_010388)	-2018.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	4.49155384250357	4.65092234506991	4.87545448340428	4.07530932086552	3.19872263412229	3.41238402466659	3.42955020378592	3.28392665161323	-4.38278289014396	1.09793965122226e-09	7.02158548376902e-08
Merged-chr19-56763849-3	chr19	56763763	56763963	+	788.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41491.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	3.79681603271702	3.64832586769814	3.84560787382042	3.79949380000324	3.55199494726788	4.05924481365552	3.51214746241379	3.52304953788315	-0.295167486286824	0.547288802409531	0.796783882293747
Merged-chr1-128417214-7	chr1	128417084	128417284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177445, exon 1 of 16)	exon (NM_177445, exon 1 of 16)	232.0	NM_177445	226414.0	Mm.28693	NM_145507	ENSMUSG00000026356	Dars	5730439G15Rik	aspartyl-tRNA synthetase	protein-coding	6.08221772814376	5.81406841002234	6.40806869065273	5.92340217364311	5.79920530144623	5.93440990221337	6.1693645824684	6.26953749751864	-0.0241080887632348	0.92850228264947	0.974017522689856
Merged-chr7-66124787-4	chr7	66124699	66124899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 1 of 2)	intron (NM_001081163, intron 1 of 2)	15284.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	6.9868044717032	6.73960565353199	7.05899006733222	7.15490547684685	6.56515673958357	6.40595859244575	6.8517129128651	6.8817765889638	-0.437048503606321	0.0483548025197513	0.227004780936115
Merged-chr12-118772938-4	chr12	118772810	118773010	+	724.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6BA|LTR|ERVK	-73419.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	3.5940288433078	3.50120593241849	3.7842340638183	3.35088708682661	3.50216728404387	3.21514056682809	3.57956286745708	3.48596072029332	-0.338005212795039	0.519162180942856	0.779893987197256
Merged-chr19-5726335-4	chr19	5726223	5726423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053252)	promoter-TSS (NM_053252)	-6.0	NM_053252	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	5.71635087747264	5.96464028064965	5.40260807166638	5.27062923125218	6.1412717924736	6.07970583813592	5.52729919221533	5.96522189233965	0.563868408937788	0.0635403622271896	0.267617718518883
Merged-chr12-13249125-4	chr12	13248979	13249179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134040)	promoter-TSS (NM_134040)	95.0	NM_134040	104721.0	Mm.251255	NM_134040	ENSMUSG00000037149	Ddx1	AA409185|DBP-RB	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	protein-coding	5.40332383290745	5.02214357546092	5.64166766642479	4.86805935884252	5.00196583667592	4.82202129491849	5.14955054562506	5.03956189713075	-0.462235809928341	0.188536561701626	0.48714403678525
Merged-chr18-53250254-4	chr18	53250157	53250357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	4595.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	6.22636547295911	6.35445576009196	6.68464045590478	6.91731557988853	6.34499386253285	5.97727902368548	6.54747475758189	6.56094564549926	-0.306617016485304	0.250257934539468	0.561320283324095
Merged-chr16-10482529-4	chr16	10482416	10482616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243760, intron 1 of 18)	intron (NM_001243760, intron 1 of 18)	2444.0	NM_001302618	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	6.56569996777932	6.62601429698312	6.78120728349345	6.5614047723124	6.45109317402835	6.30126510310719	6.33166954874254	6.02669663889226	-0.495699947477859	0.02686478544572	0.155780738349564
Merged-chr5-72208679-4	chr5	72208572	72208772	+	930.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	5329.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	5.48751969987957	5.60843616770844	5.48848675655423	4.96139742241832	5.06551448502664	4.90280311685974	5.01711051936395	4.96476409999256	-0.752099710314631	0.0242021264723932	0.145312792929437
Merged-chr8-79210135-3	chr8	79210040	79210240	+	969.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026315)	TTS (NM_026315)	38443.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	4.50973119638818	4.04157876488069	4.78119340314885	4.70812860636996	3.84096512505652	3.67748828430761	4.52553283301305	4.16307544834816	-1.08571830576488	0.0281370368679388	0.160580993202615
Merged-chr17-71096706-4	chr17	71096604	71096804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 21 of 36)	intron (NM_001083934, intron 21 of 36)	77147.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	5.96349473710352	5.53978867416882	5.69322831962223	5.86695231573994	5.7463925789343	5.70823790006077	5.61328308919414	5.46950023902677	-0.226715609814055	0.397694490292966	0.69600358118087
Merged-chr10-53927685-1	chr10	53927585	53927785	+	1000.0	f0_balb.idr	intron (NM_008548, intron 8 of 12)	MTD|LTR|ERVL-MaLR	148111.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	5.65288514430985	5.96822270518522	5.74710267748332	6.01610839149803	4.93968309221463	4.97822067860396	5.02123850584963	5.153486234468	-1.50840758311118	2.220328854471e-07	8.85382563206674e-06
Merged-chr8-41057440-5	chr8	41057307	41057507	+	875.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 3 of 13)	intron (NM_001005863, intron 3 of 13)	-2611.0	NM_001005864	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	3.77837188825258	3.81795517417462	3.96600074709951	4.02555413879954	4.64438295446631	4.70260565648435	4.6844151791996	4.86030892702591	1.908138473278	2.99601937035473e-06	9.43600277710086e-05
Merged-chr3-60526407-4	chr3	60526316	60526516	+	932.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	25237.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.60943675183886	5.03374419530743	4.28918250500934	4.41073417807645	4.81913329316978	4.61425300197403	4.50563934643076	4.95945785698593	0.263803603826939	0.501833849648919	0.769430285717741
Merged-chr5-140332274-4	chr5	140332169	140332369	+	859.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026510)	promoter-TSS (NM_026510)	313.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	4.01864625135441	4.48832879692875	3.86434375845413	4.0910625591519	4.1215596866897	4.09246911028964	3.95316566131281	3.74805981421128	-0.389877313738785	0.391055629719788	0.690939565734194
Merged-chr11-113422660-7	chr11	113422531	113422731	+	981.642883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 5 of 9)	intron (NM_027216, intron 5 of 9)	143184.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	5.87174136418841	5.76424949875577	6.30003827022454	6.12582948152353	4.37052643858816	5.18746715665418	4.51021759466707	4.73474517818266	-2.43157271522497	5.49264845251614e-12	5.24076708045102e-10
Merged-chr16-20085782-4	chr16	20085669	20085869	+	977.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11785.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	5.39823310924861	4.84016895728689	5.13399810807272	5.40242842447123	5.02305303287596	4.97892412590244	5.23267261126518	5.3131367842504	-0.151494723027854	0.641465904485965	0.848739672716498
Merged-chr18-64510257-4	chr18	64510179	64510379	+	958.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142950, intron 6 of 14)	intron (NM_001142950, intron 6 of 14)	6278.0	NM_027350	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	5.22395222257807	4.73699871346684	4.89655924175768	4.85868356373036	4.27532886435581	4.58536940978281	4.65149421495822	4.92685306613905	-0.659075042145138	0.0776236464001304	0.30130973321959
Merged-chr9-121679708-3	chr9	121679622	121679822	+	773.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178677)	TTS (NM_178677)	25307.0	NM_178677	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	2.94299069016655	3.09336969328083	3.01405907035884	2.84425131716282	3.45825296801467	3.43750854484023	3.19443780968618	3.61126638402281	1.78807263069639	0.00128200700310847	0.0164329149062233
Merged-chr11-69099356-4	chr11	69099259	69099459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159367)	promoter-TSS (NM_001159367)	410.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	6.04450925951502	5.64488874164996	5.77221795165188	5.30198822312097	5.2835725929305	5.77174321341736	5.56761425109048	5.85868404830444	-0.12119242840311	0.69812512558855	0.878180583445566
Merged-chr14-18331806-4	chr14	18331711	18331911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009455)	promoter-TSS (NM_009455)	33.0	NM_009455	22194.0	Mm.4429	NM_009455	ENSMUSG00000021774	Ube2e1	UbcM3|Ubce5|ubcM2	ubiquitin-conjugating enzyme E2E 1	protein-coding	6.14306527104878	6.61225874048672	6.91465548453662	6.52867400269248	6.34768308220745	6.6154803904817	6.58458807309252	6.3988087143276	-0.131107731457398	0.589906056266911	0.820625074345231
Merged-chr17-6948564-5	chr17	6948429	6948629	+	969.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083945)	promoter-TSS (NM_001083945)	-173.0	NM_001083945	100037282.0	Mm.29830	NM_001083945	ENSMUSG00000023806	Rsph3b	Rshl2b	radial spoke 3B homolog (Chlamydomonas)	protein-coding	4.55423165807243	4.40111186446186	4.71871011802882	4.34776163101999	4.62629720945894	5.13316326117395	4.80563555589942	5.08006199481425	0.883429723337182	0.0141815608354918	0.100832016652629
Merged-chr2-168904383-4	chr2	168904253	168904453	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51234.0	NM_009564	22722.0	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	4.24434312978457	3.90701839318587	3.44167705918923	3.92758477389946	4.17322210976577	3.94485327459883	3.86127676114463	4.3922606367866	0.531402489192619	0.28125226908401	0.593350676368524
Merged-chr5-123832474-4	chr5	123832398	123832598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33018.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	6.02039354260744	6.40591663419062	6.43907470876245	6.37984026389231	6.61032267631925	6.96934268728398	6.63249661011322	7.12756824991305	0.751320790462236	0.00156508344763735	0.0193404643610033
Merged-chr7-30559722-4	chr7	30559618	30559818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290569)	promoter-TSS (NM_001290569)	-72.0	NM_001290569	75660.0	Mm.379242	NM_029377	ENSMUSG00000036845	Lin37	1810054G18Rik	lin-37 homolog (C. elegans)	protein-coding	8.1520169134728	8.30772800013657	8.1280821348916	8.53719983028625	8.22516617294287	8.20614655509913	8.29993747404034	8.30626546097391	-0.0544755624917525	0.747289994648407	0.90052575091132
Merged-chr14-57797582-4	chr14	57797464	57797664	+	864.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142441)	promoter-TSS (NM_001142441)	-625.0	NM_009119	20220.0	Mm.30173	NM_009119	ENSMUSG00000021963	Sap18	C530046K05Rik|D11Ertd539e|EMegR4|Sap18a|Sinbp1	Sin3-associated polypeptide 18	protein-coding	4.14273993458042	4.14261280932617	4.40841599238656	3.78328464549189	4.53263140896627	4.57847200062243	4.21896919859712	4.14086083626543	0.643502142850287	0.1337266937089	0.407157683784146
Merged-chr8-94392328-1	chr8	94392228	94392428	+	542.0	f1_c57bl6.idr	exon (NM_022331, exon 6 of 8)	exon (NM_022331, exon 6 of 8)	5899.0	NM_022331	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	2.67979584796268	2.98012480207509	2.46690371709501	2.48721308347202	2.51000757201885	2.78778517657198	2.85193992679459	2.74285344943018	0.280510835756414	0.687786042482389	0.872494020965841
Merged-chr2-156253040-2	chr2	156252926	156253126	+	633.833374	f0_c57.idr|f1_c57bl6.idr	intron (NM_172674, intron 3 of 17)	intron (NM_172674, intron 3 of 17)	56379.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	3.0291994830927	2.93841731281483	3.02953610704013	2.51969460623044	3.69320180505544	3.86278704647463	3.67109909495154	3.94320763696993	3.88705669793595	1.71506430957193e-09	1.05329216989664e-07
Merged-chr2-68874646-4	chr2	68874536	68874736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	13195.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	5.45278589777744	5.45486704756198	6.06542335191294	6.33399362903064	5.45264157358691	5.50659270397433	5.4561180864924	5.53746930380041	-0.691990223835401	0.0322275740551102	0.17567392377677
Merged-chr2-170129433-4	chr2	170129261	170129461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159683, intron 2 of 6)	intron (NM_001159683, intron 2 of 6)	1859.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	5.07954251417058	5.53501503275792	5.00499793487293	5.06528542107718	6.01135157767278	5.60535241672786	5.45795538701826	5.00165088105822	0.689155502700618	0.0487335026513578	0.228075612152081
Merged-chr3-38371900-4	chr3	38371802	38372002	+	980.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112914.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	4.59082557113449	4.45947256798507	4.55273047823756	4.53686039521666	4.2698334433754	4.02712605787844	4.71289257832824	4.73273553201323	-0.152356238916733	0.70411889990843	0.881111077101003
Merged-chr3-21997542-4	chr3	21997415	21997615	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-79137.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.52844717868762	4.71896268540877	5.47840153127914	5.5153980310655	5.13576329609416	5.26141573930208	5.34274067677865	5.21547720463444	-0.212111758421289	0.526395468801861	0.783708152729562
Merged-chr7-39655333-1	chr7	39655233	39655433	+	1000.0	f0_c57.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	137567.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	3.29594470691181	3.18480148379632	3.2963490929396	2.44434786929109	4.91469697279833	5.04480056368679	5.00377978373785	4.86464834465717	8.75548694686496	1.3500670961343e-20	4.96916812293797e-18
Merged-chr16-94618698-4	chr16	94618585	94618785	+	795.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	RSINE1|SINE|B4	7266.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	4.23764868271675	4.33154382741402	4.14059800889891	4.03833775434101	4.53903665122617	4.267769320494	4.86208936820693	4.13815447845103	0.714060552463108	0.0834175724155165	0.313908505787156
Merged-chr8-66490834-4	chr8	66490718	66490918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4288.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	5.99624252614548	6.39661754883736	6.15238469974142	5.76693042577194	6.52003017788013	6.60712835933633	6.56957822254527	6.35867596109964	0.649440046979426	0.008501042313214	0.0701153755286511
Merged-chr1-72641192-1	chr1	72641092	72641292	+	621.0	f0_c57.idr	Intergenic	CpG	57941.0	NM_018817	54380.0	Mm.274232	NM_018817	ENSMUSG00000039354	Smarcal1	6030401P21Rik|AI851716|Mharp	SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1	protein-coding	2.84505916396961	3.0164343689751	3.29509046618551	2.80064671980268	3.45690433165503	3.23336830558741	3.33403708676399	3.34642721522594	1.38049106542839	0.0174495450114362	0.116744164335841
Merged-chr2-167932798-3	chr2	167932698	167932898	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	471.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	5.31594682428571	5.32512524676301	5.00318521187758	4.87642516770309	4.99824726287495	5.06883201621309	5.08076277067216	5.1969784394216	-0.0882026481426083	0.78287548068904	0.915390159014904
Merged-chr13-113614784-4	chr13	113614679	113614879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	3785.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	6.20353163098542	6.04186052493413	5.77677034841042	6.32850732896749	5.79584027646048	5.79185991852957	6.1179759378692	5.66795561519127	-0.421383700118066	0.115097423717218	0.375422103710937
Merged-chr6-123171770-2	chr6	123171670	123171870	+	961.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1253.0	NM_001004159	381809.0	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	2.61409267231577	2.52664605533726	2.61442430096881	2.48253459343123	2.61100776037851	2.58885365282742	2.33841919834021	2.48492977536602	-0.232654836084691	0.736617000417244	0.896043754662457
Merged-chr13-44601262-1	chr13	44601162	44601362	+	547.0	f0_balb.idr	Intergenic	Intergenic	-129512.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	2.76682415476203	2.95571552132104	2.93832971023467	2.81486052016753	2.61604641414572	2.52130445384336	2.56272075724684	2.56866790160799	-1.56999984879755	0.0235695968437527	0.142585443969188
Merged-chr7-67243376-2	chr7	67243276	67243476	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291195, intron 8 of 10)	intron (NM_001291195, intron 8 of 10)	20760.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	2.88591061166996	2.79694382932121	3.06798643411947	2.68240935512679	3.02333682824623	2.99532687985905	3.16245387478093	2.94819283926715	0.78119337603639	0.194294183902387	0.494711705097049
Merged-chr11-46811629-4	chr11	46811516	46811716	+	910.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 1 of 8)	intron (NM_178759, intron 1 of 8)	817.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	4.21432189081402	4.52251991432927	4.34751988988086	4.12280080041651	4.34141111828073	4.19178154312516	4.24191642199325	4.25806178355854	-0.0930377823229587	0.814303797313886	0.928327532350968
Merged-chr14-30715643-4	chr14	30715543	30715743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166532)	promoter-TSS (NM_001166532)	28.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	6.07143071843762	6.26948850862889	5.64081999565548	5.61851809529386	5.9387142148985	6.28677492349582	6.11965615791277	5.79739872107246	0.192831894895432	0.499096061177621	0.768194584032045
Merged-chr10-127658288-3	chr10	127658184	127658384	+	721.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009284, intron 17 of 21)	intron (NM_009284, intron 17 of 21)	8419.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	3.08214559341467	3.10572191399559	3.21188692547781	3.08179327771952	3.46509700972381	3.26129432639023	3.3710950127284	3.71323065731718	1.25226346289544	0.0188936258853108	0.123124423272113
Merged-chr1-165703234-4	chr1	165703119	165703319	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	4875.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	4.87179999407497	6.16037649088434	5.24181505733999	4.27676334087366	5.97555635022217	5.77952103523126	5.21502898266745	4.53514728785172	0.227895335740211	0.784474510582794	0.916076100794651
Merged-chr16-57166796-4	chr16	57166717	57166917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023175, intron 1 of 9)	intron (NM_023175, intron 1 of 9)	515.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	4.87279441191735	5.31767576913735	5.2297572677985	5.19463369650046	5.36529473645486	5.30770087350685	5.42925685232125	5.12936306843032	0.266511962286914	0.375213274404296	0.678246328029647
Merged-chr11-70468092-4	chr11	70467989	70468189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8105.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	7.53292985274067	8.09048547889834	7.67215919453474	7.21715289960511	7.57134363775383	7.90529054264661	7.18960602655334	7.27763232360956	-0.193843272343964	0.439754826686165	0.727425871224001
Merged-chr15-59864897-4	chr15	59864797	59864997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-69938.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	7.8006455233466	7.65318125224791	7.63280797612142	7.8462423833426	7.63908311742639	7.61466711593702	7.75660744845412	7.67827712334165	-0.0912360782749647	0.586000891236224	0.818516944044141
Merged-chr11-119339874-3	chr11	119339778	119339978	+	739.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130886, intron 18 of 21)	B3|SINE|B2	15632.0	NM_018822	27029.0	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	3.44161904331127	2.86107897330683	2.87507253138161	3.16187919271034	3.16766805531446	3.18316348330464	3.06184118368006	3.07122955202955	0.0594578789216338	0.921859753828348	0.970982500484595
Merged-chr16-57167319-4	chr16	57167165	57167365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023175)	promoter-TSS (NM_023175)	67.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	6.6711543053798	6.50852783310682	7.16053787451136	6.7987693633353	6.59878404214373	6.7540102556303	6.69785346978769	6.68278786683809	-0.175361871838055	0.435168594270784	0.724439632612207
Merged-chr11-87967870-4	chr11	87967779	87967979	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18706.0	NM_001168472	68097.0	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	3.80899537565798	3.80087679246865	3.75514498618313	3.68784673966803	4.41631555277495	3.87591473711208	4.15780611322169	3.57554285314308	0.813740582553527	0.0907047511202907	0.328998852425151
Merged-chr4-101020273-4	chr4	101020146	101020346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48792.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	5.73430572456738	6.10436598626356	6.63303517355448	6.49586271666326	6.0365908304998	6.0206418834383	6.39284383211707	5.70322958967457	-0.355167614073697	0.234395105610735	0.544268585576646
Merged-chr3-87358888-4	chr3	87358877	87359077	+	915.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 1 of 5)	intron (NM_009690, intron 1 of 5)	1096.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	3.58045129841471	3.86526447215733	3.90175551307509	3.58222138880621	3.66315455857721	3.92418149169775	3.83703342584816	4.03380323692222	0.387665440650438	0.404270346598003	0.701398832235717
Merged-chr17-46858025-2	chr17	46857925	46858125	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26612.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	4.40665703513763	4.06132768944533	4.32060981800978	4.44866473313033	4.63787040848884	4.49333781759689	4.20958381706452	4.4457403537482	0.319680800790356	0.415284826765199	0.709530099060962
Merged-chr19-12558346-4	chr19	12558231	12558431	+	976.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-15179.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	5.08148578102892	4.64222888803963	4.40232720661506	4.57739716046602	4.82227114944867	4.7639997779994	4.9028396522428	4.92357539410864	0.337348960063247	0.343327241990887	0.65201947058883
Merged-chr19-45048245-4	chr19	45048139	45048339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362381, intron 1 of 10)	intron (NM_001362381, intron 1 of 10)	663.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	6.12227518784281	6.03502293829832	5.66172069007038	6.2294483058857	5.98223990509395	5.94510056804407	5.86049734518626	5.73855692301812	-0.245949757545142	0.344485525372935	0.652915970479425
Merged-chr9-22962546-4	chr9	22962447	22962647	+	795.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-260529.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	3.72101904323728	3.73530448212156	3.88286684376788	4.50184050458415	3.90002306683792	3.84058438947643	3.91584670280237	3.82911293033346	-0.42029342529095	0.403682558721066	0.700922982752502
Merged-chr6-136736008-3	chr6	136735904	136736104	+	861.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145067, intron 12 of 25)	ORR1E|LTR|ERVL-MaLR	45738.0	NM_145067	14917.0	Mm.222729	NM_145067	ENSMUSG00000042638	Gucy2c	AI893437|GC-C|Gcc	guanylate cyclase 2c	protein-coding	3.70058892849679	3.87312486580002	3.70111496261048	3.89221027942589	3.57252418090596	3.46897935570741	3.46897798863037	3.53797987507552	-0.911471028705059	0.0593363617579565	0.256716973420608
Merged-chr6-124813717-4	chr6	124813602	124813802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009415, intron 1 of 6)	intron (NM_009415, intron 1 of 6)	594.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	6.12067872422424	6.16966205022796	5.6843124631819	6.28213422867758	6.18302707046387	5.83613046284153	6.64317126772235	6.30777851323512	0.275912299593274	0.323975821840577	0.635496872786134
Merged-chr4-53217747-4	chr4	53217661	53217861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28435.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	6.55359012081179	7.14624038445216	7.07644545251821	6.75163618343242	6.48006597078539	6.59268240339193	6.64677518676135	6.07309391776245	-0.623586128654203	0.0114878577588396	0.0870786608233436
Merged-chr8-40965061-3	chr8	40964952	40965152	+	887.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026840, intron 2 of 5)	ORR1F|LTR|ERVL-MaLR	38819.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	3.37389780404533	2.92030350443532	3.08251160870493	2.6050829101012	4.14935819573005	3.79932603641743	4.02133706431675	4.22613603200362	4.0446862934297	3.06480858508317e-10	2.18368378656291e-08
Merged-chr18-4368431-4	chr18	4368334	4368534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040328, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	-7158.0	NM_001361008	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	5.56335930322706	5.79586709592367	5.13592753748127	5.06770469985829	5.79179814663414	5.54378342288026	5.3709808621273	5.42342951312989	0.230727811819068	0.47650111383628	0.753055635821234
Merged-chr12-117534072-4	chr12	117533952	117534152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 3 of 27)	CpG	17573.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	4.49716894676734	4.94371811034561	5.15624084283261	5.19501751837991	4.54405809475261	4.89252805438998	4.80964810676743	4.75358204731004	-0.486922235462067	0.180088078354183	0.476417502756723
Merged-chr6-120473653-4	chr6	120473559	120473759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 3 of 12)	intron (NM_008359, intron 3 of 12)	10462.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	7.58579022136619	7.81556271236115	7.7626853023966	7.91421776874556	7.16654698009093	7.17454238176219	7.03991175676126	7.1576087142285	-0.86261017265868	1.48339509002407e-06	5.01122824455733e-05
Merged-chr12-111557740-4	chr12	111557651	111557851	+	969.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16651.0	NR_045295	100504687.0	Mm.26072	NR_045295	ENSMUSG00000096995	2810029C07Rik	AU017849	RIKEN cDNA 2810029C07 gene	ncRNA	4.90848148730793	4.97119993232726	4.79097903002595	5.16910166627703	5.09445934257895	5.41045993511265	5.21344878256964	4.97920760968796	0.367950479421004	0.254066961336707	0.565379611110657
Merged-chr2-118598208-4	chr2	118598078	118598278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009773)	promoter-TSS (NM_009773)	-33.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	5.99373137580869	6.48457002411721	5.77550303763521	5.99959888289006	6.04373801079862	6.21460895860399	6.15002069480551	6.1380979337723	0.0644234502597671	0.804104750097495	0.9245505933892
Merged-chr5-92270656-4	chr5	92270569	92270769	+	704.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025972, intron 3 of 10)	intron (NM_025972, intron 3 of 10)	7512.0	NM_001163687	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	3.8213820342212	3.72008275003398	3.76985844597047	3.83439370093899	3.61929854838657	4.17865413262779	3.94893280434683	3.71358686368269	0.245691537590142	0.597281839248882	0.825240678531284
Merged-chr3-79982564-4	chr3	79982456	79982656	+	940.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	96626.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	4.70430010566018	5.03283193564285	5.33181064488692	4.87506362749893	4.50937495537719	4.4099329306736	4.86962862311694	4.89004416182889	-0.650672973172679	0.0787403422004952	0.303647473434478
Merged-chr8-119843625-3	chr8	119843507	119843707	+	942.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3028.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	4.30237902702194	3.69258647247485	3.93738686179022	3.98209746700037	3.91028598061562	3.6086733980283	3.82340112636168	3.55448718609619	-0.725216289265178	0.137135580123741	0.411824241716235
Merged-chr2-58497163-3	chr2	58497065	58497265	+	896.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355048, intron 3 of 10)	intron (NM_001355048, intron 3 of 10)	64245.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	4.14136433424125	4.16953028787428	4.04494459243294	4.40918942312711	3.85048621379058	4.26721319301466	4.33620461632934	4.09194342733344	-0.179247218613292	0.676017062589121	0.867014726144001
Merged-chr9-23669426-4	chr9	23669334	23669534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-428584.0	NM_175678	319239.0	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding	6.24214101618119	6.18808735886661	6.46352605056872	6.42702819357877	5.95213572874686	6.15040881873908	5.94424856678666	5.94702600245411	-0.531323200589027	0.0225732480924362	0.138775369318666
Merged-chr14-64657819-3	chr14	64657714	64657914	+	937.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 1 of 39)	intron (NM_001081177, intron 1 of 39)	5283.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	3.99579202979377	4.12318020905635	4.22674633741051	4.16233738440232	3.92306832305824	4.30945247855866	4.0758360763492	3.88919556295637	-0.206766537282607	0.623459242376837	0.838952007961678
Merged-chr9-104281916-4	chr9	104281811	104282011	+	917.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18981.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	4.7201858895083	4.44610120182258	4.61164582532583	4.41101731933172	4.49184202784514	4.44150750544582	4.47156012199868	4.57002452093193	-0.102898793324904	0.776505519755392	0.912932991254018
Merged-chr2-144642166-3	chr2	144642076	144642276	+	834.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	42223.0	NM_025314	66044.0	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DTD|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	3.77779407903175	3.82966652732145	3.56683422748521	4.11535987953774	3.53718389583745	3.42812522967872	3.49565278377724	3.77610958061327	-0.882979862105058	0.0816825544448189	0.310150567738598
Merged-chr4-130861845-4	chr4	130861759	130861959	+	894.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-51475.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	4.00075630281512	4.21580570837264	3.84593704004393	3.7429899130881	4.05984247685745	4.17337291961915	4.12140660938299	3.9989647185898	0.359878422846075	0.405214515777955	0.702180446454354
Merged-chr19-3928139-4	chr19	3928040	3928240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026316, intron 1 of 9)	intron (NM_026316, intron 1 of 9)	1576.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	6.06891651336125	6.07968045444315	6.00580441320921	6.08635752254035	6.11002884853034	6.04342395011604	6.01811315117279	6.14636040859319	0.0293952782269899	0.897409515346986	0.961709001699535
Merged-chr2-38545258-4	chr2	38545165	38545365	+	927.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159631, intron 1 of 9)	intron (NM_001159631, intron 1 of 9)	33389.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	4.85484658115424	4.60541373766448	5.10258624038655	5.20237019485187	4.71667175037664	4.38872163666046	4.18657297778121	4.50123297284211	-1.05656504964112	0.00713416569058141	0.0617704492471951
Merged-chr10-79780275-4	chr10	79780153	79780353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031380, intron 3 of 4)	intron (NM_031380, intron 3 of 4)	2979.0	NM_031380	83554.0	Mm.251710	NM_031380	ENSMUSG00000020325	Fstl3	E030038F23Rik|Flrg	follistatin-like 3	protein-coding	8.0627250681842	7.99478403075438	7.85161225510358	7.68857520638896	8.19670471913	8.50502787879465	8.14327460896397	8.13444634883305	0.451780583727586	0.0118886848385276	0.0893033679915923
Merged-chr7-19271812-4	chr7	19271672	19271872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282021)	promoter-TSS (NM_001282021)	82.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	7.31802685730174	8.25068534874423	7.51029223485624	6.89152502919301	7.6130820398369	7.88572707688443	7.63019237693547	7.47682309199193	0.0893893335476838	0.750773866391003	0.901855648088396
Merged-chr15-40131220-2	chr15	40131120	40131320	+	706.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3145.0	NM_001256056	328531.0	Mm.60703	NM_001256056	ENSMUSG00000094112	9330182O14Rik	-	RIKEN cDNA 9330182O14 gene	protein-coding	3.69280618671777	3.35760865272716	3.83762379805296	3.91460428576229	3.47272374317073	3.64695332819411	3.45924440479587	3.74105667399002	-0.447676434904942	0.380642580856868	0.682959506520613
Merged-chr6-114294383-4	chr6	114294289	114294489	+	897.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178703, intron 1 of 15)	intron (NM_178703, intron 1 of 15)	11754.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	4.4153477460696	4.77281748318205	4.69629617355339	3.73412987612799	4.3514463612738	5.15289688643059	4.43905648925553	4.16911265595698	0.255416711364884	0.605105043002566	0.828698063423653
Merged-chr5-115977869-4	chr5	115977764	115977964	+	964.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007708, intron 27 of 46)	ORR1D2|LTR|ERVL-MaLR	46564.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	4.81312361383507	5.25122415233246	5.43078596656863	5.57555125537568	5.05549242467262	5.65594718480591	5.45622645710659	5.05018117902464	0.023437698356474	0.946376253597406	0.980868358011675
Merged-chr2-153120306-4	chr2	153120197	153120397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	L1MA4|LINE|L1	11829.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	6.5967166377163	6.42303280857661	6.34624631933808	6.77826438161979	6.23184459904587	6.38659665673608	6.54896519930946	6.34171097016338	-0.271799194417936	0.237903429424154	0.54819450317196
Merged-chr17-71265828-3	chr17	71265741	71265941	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	45170.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	7.27471523706201	7.47104369502254	6.87270920551064	7.10952431387862	4.05219352459998	4.59981048926855	4.48501593416225	4.5038826813497	-5.59559431287857	1.39815825237162e-36	3.01574261350181e-33
Merged-chr4-41274643-2	chr4	41274543	41274743	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026872, intron 1 of 28)	intron (NM_026872, intron 1 of 28)	492.0	NM_026872	68926.0	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	3.0875099063906	3.33243167620904	3.32385097747564	2.92508094970487	3.14710597200772	3.26322415617999	3.1396876575718	3.42528296728759	0.292554604175898	0.607484434020299	0.830012990472744
Merged-chr12-54830741-4	chr12	54830648	54830848	+	797.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32129.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	3.82285617595135	3.86565328596921	4.11600772594642	3.88355193947908	4.26730274424405	3.88728289887686	4.00830135329784	4.02326247392753	0.382116280025737	0.375406582641812	0.67840624418253
Merged-chr9-57940192-4	chr9	57940134	57940334	+	832.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011352)	promoter-TSS (NM_011352)	99.0	NM_011352	20361.0	Mm.335187	NM_011352	ENSMUSG00000038264	Sema7a	2900057C09Rik|CDw108|H-Sema-L|M-Sema-L|Semal	sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A	protein-coding	3.70543354163458	3.28064960656417	3.65952855701855	3.50448470546371	3.31892662597432	3.51206683399938	3.32605067064355	3.33625373615047	-0.584653690975629	0.263278045020659	0.57523076820325
Merged-chr7-24442482-4	chr7	24442362	24442562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199013, intron 1 of 2)	intron (NM_199013, intron 1 of 2)	3220.0	NM_199013	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	7.31856227895222	7.32936385994107	7.0441062686151	7.27486046556928	6.95365852367579	6.88495034202048	7.11459128292747	6.93641255601557	-0.376467848664654	0.0472321494525027	0.223726436805729
Merged-chr1-71723162-3	chr1	71723069	71723269	+	621.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69834.0	NR_040308	100042814.0	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	Gm15456	apolipoprotein L 7d	ncRNA	3.56361690227686	3.43214678817743	3.71444809526014	3.60212796069847	3.33669789170296	3.31074372931428	3.78812176117066	3.50788634941186	-0.27383051131754	0.594829046243132	0.823614837620898
Merged-chr5-67815622-4	chr5	67815525	67815725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	31806.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	7.17496050657326	7.26015080581522	7.54768065304088	7.61424134682732	7.41278955255553	7.37669457467403	7.27273239176362	7.28286641228604	-0.110848413532982	0.566989393536452	0.808119800518362
Merged-chr1-131378178-3	chr1	131378032	131378232	+	788.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-98569.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	3.00145068441123	3.45609936352075	3.12140911432782	2.66595813975092	2.94048939815633	3.11359284667736	2.92771851455164	2.86914135299754	-0.518843174028545	0.429680201077977	0.7205774241418
Merged-chr7-63997260-1	chr7	63997160	63997360	+	696.5	f0_balb.idr	Intergenic	Intergenic	-58345.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	3.55040842925357	3.32200069388715	3.8353185819022	3.58583767797259	3.42149696596133	3.36632404928056	3.42710406103571	3.60090748071156	-0.421313012139522	0.412968153821622	0.707963878151957
Merged-chr14-32801868-3	chr14	32801780	32801980	+	828.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163616, intron 1 of 4)	intron (NM_001163616, intron 1 of 4)	15917.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	3.81469929008057	3.38673340927175	3.72070352259756	3.73368066574133	3.38569605183616	3.62368364837802	3.75239848343858	3.44651294825048	-0.378761459939834	0.453061031902746	0.737250667901997
Merged-chr10-41385656-4	chr10	41385559	41385759	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64699.0	NM_001277229	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	5.69255375107663	5.556055154244	5.51051184525619	5.96824851558981	5.63370582284269	5.47481815692294	5.68859756643489	5.15302671753159	-0.341004643544912	0.249675852688238	0.560742666586102
Merged-chr9-20492685-4	chr9	20492587	20492787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110309)	promoter-TSS (NM_001110309)	59.0	NM_146221	235028.0	Mm.297660	NM_146221	ENSMUSG00000059475	Zfp426	2900057C04Rik|KRAB1|Zfo61|Zfp68-rs1|Znf426|mKIAA4237	zinc finger protein 426	protein-coding	6.61273159523839	6.60590257490463	7.00250991025996	6.63288741044483	6.58179072290968	6.49186234592346	6.59570046381102	6.65543962109885	-0.192684492970308	0.368258441665665	0.672721296810859
Merged-chr5-140771888-4	chr5	140771784	140771984	+	950.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 2 of 3)	intron (NM_010302, intron 2 of 3)	47757.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	4.80108493567002	5.39941800239174	5.28531677755884	4.72970646934332	4.83074435670315	4.97819419705074	4.65719169248245	4.79870219128859	-0.5119814308747	0.159031355341972	0.446219364628123
Merged-chr7-92565052-4	chr7	92564935	92565135	+	938.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025515, intron 1 of 8)	intron (NM_025515, intron 1 of 8)	3886.0	NM_001162918	66365.0	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	4.08249027513026	4.09385205163232	4.13277635929147	4.44746571254137	4.41157469125838	3.57102872460831	4.48838132202792	4.5774569342663	0.274846178358549	0.583089660083214	0.816904287158464
Merged-chr10-34199784-3	chr10	34199685	34199885	+	635.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	7766.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	4.03646339772176	3.8666149319563	3.90303339093565	3.6938567440947	3.85436162257595	3.43346581929612	3.62887574566037	3.99146388712731	-0.358966528210471	0.461468972042649	0.743289746901092
Merged-chr3-88603942-4	chr3	88603835	88604035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12272.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	7.13352121341692	7.41922429160679	6.6867212070547	6.91072672198264	7.07933848735028	6.78333660772572	6.94641233508186	6.51300560383402	-0.293303353819154	0.228633054257877	0.537456249729301
Merged-chr3-7501875-3	chr3	7501770	7501970	+	984.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1556.0	NM_173181	67306.0	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	3.80675798427519	3.74976081388377	3.8566926756644	3.94387552218295	3.6696444080768	3.82015717758598	3.88738220717944	3.70050328548974	-0.237134268350148	0.598521405451173	0.825987886019831
Merged-chr19-32305178-2	chr19	32305078	32305278	+	871.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	44138.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	2.88187612693339	2.71696374933201	2.71706877153423	2.58952079929681	2.51052822203898	2.4856762975862	2.37770689692341	2.38244425078045	-1.58647182413943	0.0315809563620236	0.173221922855242
Merged-chr18-20886502-4	chr18	20886318	20886518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177038, intron 1 of 28)	MTEa|LTR|ERVL-MaLR	9660.0	NM_029491	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	4.44060394781815	4.42379614446197	4.59439483281021	4.51859763567659	4.10400903428229	4.13553654262241	4.15298323589669	4.55481162739248	-0.59898155663931	0.127758103220057	0.397712400135597
Merged-chr5-44238401-3	chr5	44238304	44238504	+	676.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11798.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	3.77777880687308	3.71393435502349	4.08367266821833	3.80167187389228	3.32725284699266	3.49270455162	3.49180944286035	3.82444222199584	-0.964034761747947	0.056715639470099	0.249441578215656
Merged-chr18-53179003-4	chr18	53178976	53179176	+	609.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357463, intron 1 of 15)	B1_Mur4|SINE|Alu	2784.0	NM_026386	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	3.39803381552389	3.28544234556263	3.85850095142648	3.47494742896013	3.43774560854175	3.31465167876582	3.65823592699079	3.89801244278746	0.242885686556795	0.653472570658705	0.855028016671249
Merged-chr16-46148765-4	chr16	46148651	46148851	+	766.21875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	6326.0	NM_001304528	11615.0	Mm.330692	NM_001304528	ENSMUSG00000048087	Gm4737	AL024110|EG11615	predicted gene 4737	protein-coding	3.26069447756362	3.3041727717348	3.62757061793209	3.64915945385724	3.14706696029053	3.31040468932192	3.30800570214936	3.19757394325248	-0.876519673217002	0.110732071904071	0.367569749851228
Merged-chr15-62003042-4	chr15	62002928	62003128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17687.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	5.56419199784538	5.6289550724491	5.82673936935839	5.71520441893372	5.13243308088826	5.44658330652941	5.3074243964155	5.56123717307758	-0.569605033852747	0.0423143287900588	0.208724297224366
Merged-chr6-122922649-2	chr6	122922549	122922749	+	772.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_199311, intron 1 of 5)	intron (NM_199311, intron 1 of 5)	801.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	3.52077536830844	3.50535304945836	3.36195966469213	3.17775131352562	2.92740588651935	3.22664244177211	3.34865342636994	3.56804590963795	-0.391392237872913	0.501343641641752	0.769176893061019
Merged-chr2-33870522-4	chr2	33870405	33870605	+	860.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 2 of 9)	intron (NM_175184, intron 2 of 9)	17441.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	4.61314810018669	4.02169859524456	4.49980006765804	4.9246913607045	4.00056586875385	3.96695243745302	4.55505964806173	4.57394615218931	-0.595353481214862	0.204168149357566	0.50737576212243
Merged-chr4-99937451-3	chr4	99937364	99937564	+	954.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028132, intron 1 of 10)	intron (NM_028132, intron 1 of 10)	8013.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	4.23349615290511	3.9377744428051	4.27334913039837	4.32042311844228	3.60719369586	3.69070788779897	3.95244239955513	3.75477756870197	-1.27488295997985	0.00531879093775368	0.0497615957095649
Merged-chr3-146642125-3	chr3	146642002	146642202	+	907.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045949, exon 1 of 4)	non-coding (NR_045949, exon 1 of 4)	170.0	NR_045949	100286843.0	Mm.475299	NR_045949	ENSMUSG00000085810	Gm16325	-	predicted gene 16325	ncRNA	4.52230460228365	3.81888857249726	4.45222984368367	4.533871464917	3.82610085694663	4.0942956810897	4.05430419004631	3.73630599722889	-1.12737283968579	0.0156437085994886	0.108044200892975
Merged-chr16-4558728-4	chr16	4558632	4558832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031182, intron 1 of 6)	CpG	988.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	6.60998153322443	6.48449804825918	6.53363869157854	6.29852954603753	6.26640022534853	6.27738137711458	6.83335755362112	6.30185312704882	-0.0532375024974346	0.826514117968091	0.933459863315126
Merged-chr7-98085576-4	chr7	98085473	98085673	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 15 of 48)	intron (NM_008663, intron 15 of 48)	23675.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	5.16714400485565	5.35507248245552	4.85867372337004	4.81667770647229	4.96948517534666	4.99646395628364	5.04824617588979	5.13360954868668	-0.0436054461140295	0.894789113758192	0.96069135232764
Merged-chr12-52319283-4	chr12	52319226	52319426	+	956.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	161283.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	4.40948601161929	3.89061231729994	4.41016524213221	4.86919738026369	5.09148697713218	4.63438698126393	5.14158768647228	4.45351743211378	0.860312601199385	0.060989821466935	0.260988972142721
Merged-chr15-36608515-4	chr15	36608422	36608622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008774, exon 1 of 15)	5' UTR (NM_008774, exon 1 of 15)	451.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	4.95440364562552	5.2300722814801	5.7329341065906	5.17307602094142	5.28320008425623	5.78843745101123	5.43166009813659	5.65997094319162	0.439517451018312	0.173994584773323	0.468250616264522
Merged-chr16-11286084-4	chr16	11285982	11286182	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-27727.0	NM_011608	21935.0	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	4.71696702074746	4.64645345745489	4.45058925469764	4.00281383304441	5.39785634700823	5.5849152602965	4.61252437039465	4.83018837234955	1.40457655699254	0.000736228397665609	0.0105355852668758
Merged-chr17-35435002-3	chr17	35434935	35435135	+	854.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4120.0	NM_010394	15018.0	Mm.431282	NM_010394	ENSMUSG00000060550	H2-Q7	H-2Q7|Ped|Q9|Qa-2|Qa-7|Qa7	histocompatibility 2, Q region locus 7	protein-coding	3.22869657425277	3.88063934047628	3.08309919487693	2.96325626825161	4.14878397448052	3.76688316784888	3.52384150057141	3.35967123161777	1.20914384299151	0.0578864028835255	0.252589881666118
Merged-chr15-3270649-4	chr15	3270544	3270744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009155)	promoter-TSS (NM_009155)	-123.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	7.57756993910047	7.63284678073583	7.91059019922996	7.66281664957672	7.56368403446944	7.4248311194915	7.45970898558711	7.50092261703698	-0.274608421859225	0.116808435189863	0.378172312820962
Merged-chr15-95773664-4	chr15	95773565	95773765	+	967.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-17178.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	4.06192007622437	4.50792210203835	3.94385469931818	4.29067199482947	4.94071597061718	4.70873251844015	4.55404147723938	4.64747510664276	1.11601086151883	0.0051644667759464	0.0486567280800911
Merged-chr1-165708052-4	chr1	165707930	165708130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178593)	promoter-TSS (NM_178593)	64.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	5.12610394012196	5.34649107485107	5.12698177003088	4.79647316028865	4.99370922903594	4.94516861844086	5.35455379207531	4.4875484749929	-0.236347232333697	0.519781633448255	0.780308282094178
Merged-chr2-181305088-4	chr2	181304981	181305181	+	868.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9419.0	NM_009133	20262.0	Mm.2319	NM_009133	ENSMUSG00000027581	Stmn3	9330161A03Rik|AI604839|R75323|Sclip	stathmin-like 3	protein-coding	3.64193904678155	3.95954203754271	4.28960112558126	3.98498315155468	3.80314439877279	3.76080332948143	3.89622481616128	3.75528340903799	-0.516704043468144	0.265332475313991	0.577001515467012
Merged-chr5-21221087-3	chr5	21220985	21221185	+	923.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 6 of 26)	intron (NR_153365, intron 6 of 26)	34818.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	3.33897626716088	3.66549239165798	3.3393803457704	3.82961278105819	3.41353273625956	3.45182118276554	3.32769211602972	3.27641043483161	-0.699283899435211	0.197198600770404	0.498504784040791
Merged-chr7-127026908-2	chr7	127026808	127027008	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010772)	promoter-TSS (NM_010772)	-429.0	NM_010772	17188.0	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	6.11289876849326	6.34093209651962	6.37022038763165	6.0746344010557	6.52062432334015	6.71184159330485	6.37259019680721	6.43501529770693	0.436846952561477	0.0535125037172248	0.241455879688643
Merged-chr6-57533695-4	chr6	57533509	57533709	+	957.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175523, intron 1 of 6)	intron (NM_175523, intron 1 of 6)	1817.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	3.81586152788884	4.17321778830977	4.24818690336416	4.10084262115069	4.01007625246757	3.99329779169724	3.9605008670647	4.16145688845622	-0.166174534467123	0.694753294045644	0.876091214911152
Merged-chr17-80483083-4	chr17	80482970	80483170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2617.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	7.85089486444568	7.66944072054478	7.82196198405049	8.05596577365465	7.87945905156656	7.8450157172624	8.23932477404409	7.6793340159103	0.0833730681163396	0.666613093126814	0.862079457770231
Merged-chr5-23783659-4	chr5	23783560	23783760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289780)	promoter-TSS (NM_001289780)	51.0	NM_001289780	78697.0	Mm.58660	NM_178403	ENSMUSG00000057541	Pus7	C330017I15Rik	pseudouridylate synthase 7	protein-coding	7.0010033755566	6.8385278738851	6.68688464982894	7.08099057884628	6.87622295006777	6.64449973439422	7.17655286044267	6.72783602236088	-0.0618994431793792	0.779247877720962	0.913841690258744
Merged-chr4-150473036-4	chr4	150472960	150473160	+	947.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 6 of 22)	intron (NM_001085492, intron 6 of 22)	179114.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	5.72123791659285	5.06515760275002	5.19243591234242	5.64331497640907	4.96361766364859	4.69421099530627	5.00055349348649	4.94796728282819	-0.999892137250258	0.00319216622436441	0.033507624197616
Merged-chr2-170116894-3	chr2	170116794	170116994	+	791.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033299, intron 2 of 5)	intron (NM_001033299, intron 2 of 5)	14326.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	3.95165123198039	4.24789581725736	3.84657779970965	3.93198359249896	4.17146212017592	4.35183305788417	3.93579302756039	3.7299008740326	0.176665651931081	0.696505631513774	0.877228600292293
Merged-chr14-61744135-3	chr14	61744022	61744222	+	983.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-61749.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	4.80804784629896	4.9309758520871	4.77713821750062	4.73447383358901	3.91877502421703	4.0129401911678	3.99041970630965	3.81881640584014	-2.20584248959745	1.42281293869845e-07	5.90177168785645e-06
Merged-chr1-157016781-4	chr1	157016678	157016878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-77152.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	5.68751246026983	5.67168695650252	6.19033281993228	6.21036795246816	5.65443293356027	5.66572635043964	5.85651612936844	6.09267533449026	-0.242585430568276	0.39544182915481	0.69432284855103
Merged-chr19-10603039-3	chr19	10602930	10603130	+	933.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145496, intron 1 of 16)	intron (NM_145496, intron 1 of 16)	1228.0	NM_145496	225913.0	Mm.374868	NM_145496	ENSMUSG00000034371	Tkfc	BC021917|Dak	triokinase, FMN cyclase	protein-coding	4.26347939444396	4.04937671986415	4.30840148395063	4.49387032088525	4.08764501186455	4.14122871264189	4.59320734175292	4.34841942825955	0.0104794034743455	0.979941190184403	0.992772119265666
Merged-chr5-35727179-2	chr5	35727079	35727279	+	798.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359895, intron 1 of 17)	intron (NM_001359895, intron 1 of 17)	2097.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	3.09270840749159	2.66885775512507	2.8241976553394	2.50161487164088	2.5672758099142	2.59016794939107	2.81308310043102	2.6296107850587	-0.639752993883334	0.359297288624167	0.665255617589146
Merged-chr13-30566988-4	chr13	30566873	30567073	+	916.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21657.0	NM_025710	66694.0	Mm.181933	NM_025710	ENSMUSG00000038462	Uqcrfs1	4430402G14Rik|AI875505	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	4.28569691007449	3.81000497410944	3.59702621397481	4.21286460362756	4.1381430311577	3.97214047124143	4.41961941136895	4.47400909237813	0.631250057839095	0.1863084018009	0.484181449917349
Merged-chr15-67101513-4	chr15	67101403	67101603	+	863.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75379.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	4.05547174823676	3.9701515782815	3.8621841473687	4.29305952611661	3.87611554928863	3.92844657771683	3.79402134477137	3.91123337879873	-0.534343805909969	0.228236708523827	0.537082143481139
Merged-chr5-115569329-3	chr5	115569231	115569431	+	637.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172719, intron 1 of 57)	intron (NM_172719, intron 1 of 57)	4068.0	NM_172719	231659.0	Mm.153014	NM_172719	ENSMUSG00000041638	Gcn1l1	4932409G22|AL022764|G431004K08Rik|GCN1L|Gcn1|mKIAA0219	GCN1 general control of amino-acid synthesis 1-like 1 (yeast)	protein-coding	3.08979735876061	3.07599325861193	2.93411948033821	2.57572932555458	2.42736486469389	2.5000277979097	2.3888853137217	2.62104543731193	-2.50275725249547	0.00197278671425852	0.0231717797911233
Merged-chr8-126945911-4	chr8	126945801	126946001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024214)	promoter-TSS (NM_024214)	20.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	7.53527482088627	7.52983415118968	7.61590656037835	7.07259380852661	7.67752913426502	7.74082075951289	7.58701363300945	7.77074095139963	0.336148543994097	0.0870709343129598	0.321801270691654
Merged-chr7-110268164-3	chr7	110268079	110268279	+	905.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 6 of 11)	intron (NM_009302, intron 6 of 11)	46476.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	4.29197654118646	4.81095286314089	4.19455706394951	3.82498027170887	4.49516493054021	4.72083992628802	4.56525082989125	4.38111550883573	0.499717621413253	0.25822605112121	0.570019292688994
Merged-chr10-77267209-4	chr10	77267112	77267312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030262, exon 8 of 9)	exon (NM_030262, exon 8 of 9)	7912.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	5.9020102818708	6.34740508879255	6.6351933404336	6.25697779309866	6.1087110472401	6.00515976868238	6.51323518203297	6.67236694768992	0.0632262236459021	0.818516941266835	0.930445174876607
Merged-chr17-71125663-4	chr17	71125562	71125762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 36 of 36)	intron (NM_001083934, intron 36 of 36)	-57870.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	5.90238094604287	5.95560461379629	5.67052962977963	6.40812531058067	6.03396478194231	6.05616463636773	6.08894734430354	6.21166550619198	0.090315927924397	0.741344323048453	0.898139463026673
Merged-chr7-25680265-4	chr7	25680147	25680347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362154)	promoter-TSS (NM_001362154)	-533.0	NM_001362154	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	6.36427986561778	6.80453186729447	6.66864309799329	6.56612819774108	6.54654729997868	6.8142919984772	6.67857831080134	6.5707407785556	0.0579060487483324	0.788686608325437	0.91812687233996
Merged-chr10-80350457-4	chr10	80350363	80350563	+	988.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-2015.0	NR_104340	66548.0	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	5.40809437120495	5.79450544477805	5.08067165979114	5.25561488389059	5.37671223926277	5.18501192871694	5.49202027938793	5.77812157811269	0.112785819833887	0.72576844598717	0.890921883682774
Merged-chr16-24859649-2	chr16	24859549	24859749	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 9 of 12)	intron (NM_178665, intron 9 of 12)	137794.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	4.57847799444232	4.97581503810655	4.62051759189597	4.37381300304897	4.95360383820819	4.9092026673994	4.28161692026287	4.69625551994467	0.195521947365555	0.619614243830185	0.836720209857499
Merged-chr1-105171222-4	chr1	105171125	105171325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-184782.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	5.46277225363179	5.59572245797965	5.96346531889463	5.97233847336921	5.79650432499582	6.04894637674028	6.36672988880728	6.02277294110592	0.459830524387183	0.102278442750977	0.351168649682687
Merged-chr7-75794463-4	chr7	75794340	75794540	+	814.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	-53898.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	4.14914464700875	3.94193793612662	4.40278620622011	4.13792159738767	4.38142428868748	4.07099445741864	4.17712917419567	4.14725555235132	0.113524181200484	0.783202631795795	0.915515669194523
Merged-chr1-53742245-3	chr1	53742154	53742354	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35470.0	NM_001252070	627872.0	Mm.184692	NM_001252070	ENSMUSG00000096141	Dnah7a	Dnahc7|Dnahc7a|Gm992	dynein, axonemal, heavy chain 7A	protein-coding	3.78403594464796	3.70614499600662	3.93745602342124	3.12683229063558	6.08654252925101	5.97119900509572	6.13129179284713	5.74863367951825	5.47135508541215	2.6956057558838e-37	7.37963546530973e-34
Merged-chr10-121426734-1	chr10	121426634	121426834	+	763.0	f0_c57.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	49516.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	3.12344032340443	3.14535779459497	3.19039421881484	3.21924736746214	3.42475339736462	3.42991563462585	3.30190919984241	3.91419381323797	1.26155711266268	0.0209019861617297	0.131907303218881
Merged-chr1-157407724-1	chr1	157407624	157407824	+	721.5	f0_balb.idr	intron (NM_177644, intron 1 of 17)	intron (NM_177644, intron 1 of 17)	-4628.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	3.2772569632923	3.30841897093038	3.43923308680706	3.37868005132825	3.14475940451255	3.20166262788372	3.32109918270014	3.27598489071138	-0.445504513596801	0.400789934614047	0.698500623344254
Merged-chr19-5946264-4	chr19	5946159	5946359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 13 of 17)	intron (NM_001164057, intron 13 of 17)	17947.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	6.25895587476442	6.11330116553985	6.20277616967293	6.06129574483016	6.34376235039504	6.31859724296787	6.00518261048731	6.37979103418118	0.183747845334048	0.426463684871505	0.717926209778027
Merged-chr10-79726336-4	chr10	79726237	79726437	+	951.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008226, intron 3 of 7)	intron (NM_008226, intron 3 of 7)	9703.0	NM_008226	15166.0	Mm.12956	NM_008226	ENSMUSG00000020331	Hcn2	BCNG2|HAC1|trls	hyperpolarization-activated, cyclic nucleotide-gated K+ 2	protein-coding	4.45340539590246	4.53515749642434	4.54356871561332	4.53588048803544	4.74820132270992	4.84043298136889	4.79215809885826	5.03537528130471	0.709280208118083	0.0361372252388672	0.188980350839566
Merged-chr2-155402154-3	chr2	155402016	155402216	+	865.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019825, intron 11 of 13)	intron (NM_019825, intron 11 of 13)	20260.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	4.67719006184955	4.20558368147843	4.27728569881506	4.75573334545002	3.77838573825028	4.06114048622029	3.68019962632163	3.8768773796085	-1.73690439253406	0.00014489230549278	0.00277388096091194
Merged-chr10-25312066-2	chr10	25311974	25312174	+	668.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12911.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	2.69306500484355	2.63401485073386	2.85184660868691	2.73065879033343	3.48893258230561	3.17753044301559	3.43482184402541	3.70873354412912	3.04405961811712	5.96391101962707e-06	0.00017355078596322
Merged-chr3-88139495-3	chr3	88139401	88139601	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2871.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	3.6133937969	3.82277950246975	3.43582852599897	3.59636706474989	3.52771950093108	3.78694659896571	3.65345859947038	3.99258974844595	0.36853892339981	0.449798929051543	0.734839862538956
Merged-chr10-121516432-4	chr10	121516323	121516523	+	995.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40173.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	5.49036391248672	5.08313840099785	4.92251322566012	5.2330706711471	5.3195282496044	5.17727209286478	5.41196962894771	5.35342592183272	0.217720214069588	0.473495693916191	0.751223284962802
Merged-chr7-44360103-4	chr7	44360022	44360222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027049)	TTS (NM_027049)	14908.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	5.98908400003689	6.21124287941002	5.80035940228603	6.0380769020023	6.1056965591519	6.42178573270152	5.84501886802174	5.82155807287937	0.0750869403852045	0.775904337448788	0.912589557408825
Merged-chr12-85219352-4	chr12	85219226	85219426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145445)	promoter-TSS (NM_145445)	-155.0	NM_145445	217715.0	Mm.29041	NM_145445	ENSMUSG00000004788	Eif2b2	EIF-2Bbeta|EIF2B	eukaryotic translation initiation factor 2B, subunit 2 beta	protein-coding	8.35489382604881	8.41998184793106	8.0406398548931	8.26703310555468	8.39735625665339	8.57106875807783	8.55513308076368	7.99317043763607	0.151704196615142	0.420881695683251	0.713590067577488
Merged-chr13-113590390-4	chr13	113590325	113590525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28139.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	7.12280922901722	7.40301255927838	7.34570178474066	7.11202760173044	6.94441921866784	7.03216845449185	7.06499322112418	6.72969271547331	-0.410669074741716	0.038712189796208	0.197538529467217
Merged-chr5-108627218-4	chr5	108627127	108627327	+	970.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359923, intron 1 of 22)	intron (NM_001359923, intron 1 of 22)	2550.0	NM_001359924	231580.0	Mm.276647	NM_153569	ENSMUSG00000062234	Gak	D130045N16Rik	cyclin G associated kinase	protein-coding	5.12733145443064	5.07024973401525	5.28671558440911	5.64245156004461	4.63426385765436	5.30391033210181	5.28956205112367	5.42373103847334	-0.234369613538658	0.512140834407973	0.775701492755237
Merged-chr13-119453409-2	chr13	119453309	119453509	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145457, intron 9 of 10)	B1_Mus1|SINE|Alu	-9350.0	NR_153825	67392.0	Mm.390641	NM_026127	ENSMUSG00000062822	4833420G17Rik	2210017J06Rik|5730533D17Rik|AW107518|C85193	RIKEN cDNA 4833420G17 gene	protein-coding	2.84364946135446	2.95958110587771	2.78614297883482	2.50746011321677	2.64771932691521	2.55428530475168	2.3674417394766	2.66058248729705	-1.10554344226654	0.129818760108551	0.401040298848425
Merged-chr3-89160172-4	chr3	89160066	89160266	+	966.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008227)	promoter-TSS (NM_008227)	-9.0	NM_008227	15168.0	Mm.389461	NM_008227	ENSMUSG00000028051	Hcn3	BCNG-4|Bcng4|Hac3|Hcn4	hyperpolarization-activated, cyclic nucleotide-gated K+ 3	protein-coding	4.62109976091271	4.6579092893417	4.30298351990366	4.6248616907486	4.95263711010723	4.83415849546886	4.75117298485806	4.65857919169294	0.514167766234038	0.141290568963453	0.418184598455221
Merged-chr12-102498693-8	chr12	102498531	102498731	+	814.866638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001199004)	TTS (NM_001199004)	28721.0	NM_013747	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	3.6215782082519	3.53427386469687	3.72388102195882	3.59577960471134	3.51728193165099	3.79203178497279	3.55417044803898	3.56605550815356	-0.0342283864590208	0.942740827106269	0.97926361084735
Merged-chr7-29180691-4	chr7	29180631	29180831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026545)	promoter-TSS (NM_026545)	-58.0	NM_026545	57296.0	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding	8.44903875442041	8.62006395627514	8.44025636682458	8.36976706177456	8.33599964893756	8.6332818756895	8.35452167693175	8.18808580005363	-0.107884158489363	0.518966450761156	0.779791707980163
Merged-chr12-86950370-2	chr12	86950270	86950470	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173735, intron 1 of 3)	intron (NM_173735, intron 1 of 3)	3027.0	NM_001289432	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	3.0605918208284	3.09795162138875	3.17121194028715	2.96776051362948	3.00867190311801	2.98117827889681	2.86641846865878	2.93849771779375	-0.508143886956773	0.386508660071528	0.687644968887004
Merged-chr2-144369586-3	chr2	144369447	144369647	+	835.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166640, intron 1 of 10)	intron (NM_001166640, intron 1 of 10)	512.0	NM_181417	228714.0	Mm.227925	NM_181417	ENSMUSG00000027425	Kat14	2510008M08Rik|ATAC2|AU023459|Csrp2bp|D2Ertd473e|D2Wsu131e|E430020F17	lysine acetyltransferase 14	protein-coding	3.56119045283206	3.33276273216481	3.90026415127931	3.86164373481545	3.44941148869253	3.67842669343883	3.49197373668509	3.55973428788034	-0.464688870619095	0.367649176800979	0.672134914355495
Merged-chr8-119426618-4	chr8	119426505	119426705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10557.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	6.23590482290618	5.73085167183718	5.92425831211664	5.96994796665047	6.27469165868992	6.21326626059262	5.98477866607445	6.43628421987306	0.409339331538479	0.101534536145037	0.349626372612238
Merged-chr4-122836252-4	chr4	122836152	122836352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008917)	promoter-TSS (NM_008917)	25.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	5.68413672702958	5.83887506830186	5.10824016140494	5.58700452695721	5.40395456915725	5.90604399446325	5.70379292655628	5.28305804310319	0.0102490855356846	0.974054377615806	0.990729148544825
Merged-chr11-59540318-4	chr11	59540197	59540397	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1272.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	5.62791670741765	5.03762890971483	5.18177530792115	5.47071276166808	5.20835912597687	5.32437908023635	5.34172648304846	5.47539361002843	-0.0345782878154565	0.909947198399844	0.966616894530378
Merged-chr9-62936141-3	chr9	62936132	62936332	+	720.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 2 of 13)	RSINE1|SINE|B4	44647.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	2.46323099781317	2.53328158049102	2.60642100709512	2.59630562507344	2.87840467525818	2.77818470248298	2.84111336420231	2.73409555040058	1.25143243627517	0.0533263285151108	0.240936570863087
Merged-chr19-53422514-3	chr19	53422427	53422627	+	788.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31893.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	3.19873622655081	3.03222141741583	3.02936643379868	3.24122002268878	2.8986732350711	2.9397920268066	3.13275599267805	2.90105972261282	-0.690588984105045	0.242742664371505	0.553610384726029
Merged-chr17-70848425-4	chr17	70848367	70848567	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164074, intron 1 of 2)	intron (NM_001164074, intron 1 of 2)	1323.0	NM_001164076	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	4.91139561361677	4.69416704594217	5.0122620963652	4.8024304468584	4.98483539523356	4.86064178185023	4.70382583692365	4.94310271377675	0.0609708920140357	0.852642293958111	0.944594954733765
Merged-chr4-130308661-3	chr4	130308574	130308774	+	752.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010174)	promoter-TSS (NM_010174)	-104.0	NM_010174	14077.0	Mm.388886	NM_010174	ENSMUSG00000028773	Fabp3	Fabph-1|Fabph-4|Fabph1|Fabph4|H-FABP|Mdgi	fatty acid binding protein 3, muscle and heart	protein-coding	3.59154581120318	3.96190575977328	3.80531325098607	3.61388615749963	3.49487727038593	3.87509679311628	3.63444954680129	3.85118867090063	-0.0945187256899287	0.844863076766977	0.941218991545198
Merged-chr13-52079414-4	chr13	52079309	52079509	+	961.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17332.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	4.64351801303088	4.74763140978567	4.83664705362402	4.79279079076867	5.17321993464111	4.73522687828256	4.7027004222104	4.68208886030429	0.200578238989456	0.565442047843591	0.80755230890385
Merged-chr5-92091851-3	chr5	92091753	92091953	+	671.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-8109.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	3.95490911038763	4.04817825583269	4.18664356032908	3.80980992487015	4.01551196555746	4.02591715637954	3.93906444775399	4.22547424562597	0.161646162754078	0.705395689522067	0.881685774219734
Merged-chr10-68238944-4	chr10	68238833	68239033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	39793.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	6.47515212902895	6.37342150494396	6.06733986799708	6.23377310447434	6.71645676712838	6.61832191231822	6.55395541218983	6.36774512135224	0.417149090945164	0.0635909392784876	0.267735683597744
Merged-chr17-31067245-4	chr17	31067121	31067321	+	912.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	9527.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	5.10783745131152	4.96968002257725	4.79157599723578	4.65904751584897	4.35325084776909	4.81323943478638	4.44475941726505	4.50736932183505	-0.754366759193383	0.0411860530518349	0.205330540935371
Merged-chr10-85354535-3	chr10	85354442	85354642	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32272.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	4.03001343418341	3.92131673220487	4.10139516614394	2.76286370810464	6.36309081904922	6.26316737902908	6.29446137250503	6.23806280104027	6.13867064351387	8.2275531265277e-36	1.67322572569461e-32
Merged-chr9-121636397-4	chr9	121636281	121636481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026915, intron 1 of 5)	intron (NM_026915, intron 1 of 5)	5212.0	NM_026915	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	5.5824676795644	5.17623605887719	5.58344742553861	5.39223989599123	5.2567084518066	5.22150826638894	5.1920452781188	5.30822626567256	-0.342592940332258	0.239626433918722	0.550116753423665
Merged-chr2-35732713-3	chr2	35732597	35732797	+	946.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35965.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	4.31107346793278	4.27381217517266	3.92011499346373	4.14765963798653	4.05169186809054	4.39628107070825	4.20565046374722	4.46728306029834	0.275551871764428	0.502400560377149	0.76965261578213
Merged-chr5-103746935-4	chr5	103746839	103747039	+	966.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7223.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	4.89529366377405	4.64675880671121	4.61834791561689	5.08793994926605	5.12058442640059	5.06882653241524	4.7999223299214	4.96217406326839	0.299441366303554	0.38535106950764	0.686726426145025
Merged-chr6-57707431-3	chr6	57707327	57707527	+	879.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133737, intron 1 of 8)	MLT1F1|LTR|ERVL-MaLR	4972.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	3.46155086018072	3.4761354328046	3.6172830220359	3.40833226264253	3.44974242357368	3.57650574269366	3.3930918990421	3.3452739994519	-0.149710772559559	0.764759056947425	0.907812114625849
Merged-chr2-132843582-2	chr2	132843482	132843682	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025676, exon 18 of 18)	3' UTR (NM_025676, exon 18 of 18)	-3084.0	NM_001024385	66586.0	Mm.357342	NM_025646	ENSMUSG00000027357	Crls1	0610009I22Rik|4930557M15Rik|5730490M08Rik	cardiolipin synthase 1	protein-coding	2.81880986565654	2.93600357957756	2.96415669822458	2.8318450675871	3.48223605235959	3.20854409024918	3.3101297746182	3.51617591264504	1.9931934886873	0.000433710581369528	0.00687245892059252
Merged-chr11-31734305-4	chr11	31734175	31734375	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62413.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	5.27048720409831	4.84705893061198	5.61140367842561	5.94244304254691	4.90210187835242	5.0703140591756	4.69615573283258	5.17437019146594	-0.965760856064618	0.0104110665190706	0.0813088988107227
Merged-chr3-87508440-4	chr3	87508322	87508522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17156.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	5.99925916231327	6.62098549684591	5.85304290358323	5.88744414102594	6.62233749661307	6.63654346652001	6.23867990936962	6.06372664391165	0.432654260890003	0.134641622683531	0.408489696527381
Merged-chr12-26465769-4	chr12	26465664	26465864	+	863.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-3451.0	NM_020557	22169.0	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	4.95192303724351	4.60872865248725	4.44171169247365	4.70012157946889	5.03216908132143	4.37777729976092	4.42189282318186	4.13834928944876	-0.285938968504785	0.504219272175479	0.770626277304553
Merged-chr7-126897520-4	chr7	126897406	126897606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026827, intron 1 of 5)	intron (NM_026827, intron 1 of 5)	772.0	NM_026827	68742.0	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	6.2713936875731	6.28655779716115	5.85613139435502	6.05174018193468	6.4534736347235	6.48444728195479	6.16377247687597	6.39227991164827	0.386636839042555	0.102069349738362	0.350783967080574
Merged-chr1-58953929-4	chr1	58953829	58954029	+	848.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172406, intron 1 of 15)	intron (NM_172406, intron 1 of 15)	19553.0	NM_172406	70827.0	Mm.222887	NM_172406	ENSMUSG00000026028	Trak2	2900022D04Rik|4733401O11Rik|AI480836|AW046271|Als2cr3|CALS-C|GRIF-1|GRIF1|OIP98|mKIAA0549	trafficking protein, kinesin binding 2	protein-coding	4.0422663371007	4.31935996254128	4.09423847666921	4.75994714636269	4.06351054087573	3.87314120368362	4.42411174641709	4.36321903963123	-0.378510494247784	0.415259541454843	0.709530099060962
Merged-chr16-33668467-4	chr16	33668401	33668601	+	866.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15965.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	4.03160970640529	4.06434219168876	4.03221296217833	3.93256213298633	3.84040631782363	4.15557994040772	4.0147655132519	3.88112901149408	-0.105491974483015	0.803826497872499	0.92438229113459
Merged-chr10-95279040-3	chr10	95278939	95279139	+	943.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	MTD|LTR|ERVL-MaLR	44670.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	4.72791223054534	4.3229910988482	4.40504317445349	4.82663277143713	4.12228495550355	3.8436806208118	4.01020622938026	4.17897875116922	-1.3467161261295	0.0015855547804553	0.0195357804601053
Merged-chr3-105059059-4	chr3	105058944	105059144	+	948.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5898.0	NM_030249	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	4.87937680608734	4.59754741507076	4.25092617593654	4.46016006906221	4.8473918064399	4.83704505996809	4.75367967770611	4.80884509188519	0.539813643868704	0.130425152589236	0.402023728397247
Merged-chr11-17211559-4	chr11	17211463	17211663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178909)	promoter-TSS (NM_178909)	26.0	NM_025443	66249.0	Mm.27831	NM_025443	ENSMUSG00000020116	Pno1	1810003N24Rik|AA407421|AU015468|AU019495|AU042323|Emi3|Imi3	partner of NOB1 homolog	protein-coding	7.52527231708178	7.65429944655902	7.30806825864189	7.47887356879964	8.11010886369072	8.1759062813047	7.99220706931138	8.06302015421336	0.765318255941319	5.6412063691845e-06	0.000164983911784574
Merged-chr17-5626511-4	chr17	5626410	5626610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	133910.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	7.24555892867764	6.8997253947451	7.76833666932508	7.8287089396095	7.49133192942912	7.63282467337274	7.51081020024661	7.66184955722543	0.10009087585044	0.677284707304024	0.867588960536895
Merged-chr4-132310062-4	chr4	132309963	132310163	+	876.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_034046)	promoter-TSS (NR_034046)	110.0	NR_034050	100217418.0	Mm.258912	NR_034050	ENSMUSG00000064604	Snora44	MBI-64	small nucleolar RNA, H/ACA box 44	snoRNA	3.97065687022524	3.85835383579564	3.92137961317605	3.81489280653228	4.37104972242977	3.93670358572046	3.68700680733891	4.23251501956072	0.554880051901154	0.222063411481301	0.530087061087981
Merged-chr5-21711686-4	chr5	21711591	21711791	+	878.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10069.0	NM_001359965	242864.0	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	4.63797861058736	4.32764622417066	4.15845197963288	4.05650710593785	4.87521922110866	4.84428873336543	4.37888447612346	4.20764060323768	0.704170683274663	0.0951606291009616	0.337557979606167
Merged-chr7-99535652-4	chr7	99535528	99535728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177231, exon 1 of 16)	5' UTR (NM_177231, exon 1 of 16)	142.0	NM_177231	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	6.64022627575588	6.88893904424065	6.49661622405412	6.02224632999408	6.61470604685094	6.83245384301944	6.57683106319232	6.63665512693024	0.187441560462775	0.466777258759321	0.746491290418458
Merged-chr13-51315722-4	chr13	51315629	51315829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92889.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	5.34370173579082	5.42590572332488	5.62096829910851	5.75668920696819	5.50531576318412	5.32314154508616	5.46285669183874	5.3714074847908	-0.243409184802146	0.391485039008138	0.691279263407274
Merged-chr10-20719400-4	chr10	20719297	20719497	+	760.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	G-rich|Low_complexity|Low_complexity	5681.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	3.95312941048934	3.62107605153207	3.54297247809917	3.62220021290995	3.86571591545341	3.93507283108059	3.7984209071649	3.60011182501086	0.351511995522244	0.453966650394904	0.737821491230936
Merged-chr4-142153725-3	chr4	142153584	142153784	+	838.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109684, intron 3 of 6)	intron (NM_001109684, intron 3 of 6)	56524.0	NM_144531	71529.0	Mm.255986	NM_144531	ENSMUSG00000040606	Kazn	2310007B04Rik|9030409G11Rik|AI256607|AI666764|AW061099|Kaz|Kazrin	kazrin, periplakin interacting protein	protein-coding	3.52085318137979	3.33915900399537	3.10294600088232	3.32232938290993	4.10360842873575	4.33907283691244	3.82402931919765	3.51940149843179	1.98264275635332	0.000257791218398112	0.00448200320819717
Merged-chr14-79661285-3	chr14	79661215	79661415	+	891.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010701, intron 2 of 6)	CpG	868.0	NM_001310655	16840.0	Mm.46561	NM_010701	ENSMUSG00000022025	Cnmd	Bricd3|ChM-I|Chmd|Lect1	chondromodulin	protein-coding	3.34690289557774	3.40757003014394	3.3473520327036	3.32695900685556	3.28452062728101	3.46061235160147	3.27854238018363	3.034996784555	-0.305205139965064	0.57031302664948	0.809955403437605
Merged-chr1-138322855-4	chr1	138322769	138322969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49131.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	7.52465944630543	7.81351666046546	7.24287372598632	7.43563786893756	7.49986183139479	7.6939441463215	7.29400198582132	7.40722733914355	-0.0533891756426268	0.791436988694183	0.919103527675116
Merged-chr8-83697539-4	chr8	83697434	83697634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177262, intron 1 of 21)	intron (NM_177262, intron 1 of 21)	1645.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	6.3706434574671	5.46801796587094	5.63019039698481	5.96539204038088	5.65127142414452	5.83566794750301	6.10122525905462	5.94639629164632	-0.0257428649728028	0.93237551146002	0.97563407274323
Merged-chr2-152115597-4	chr2	152115496	152115696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10072.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	5.90628884840354	6.31843014278246	5.97421678457452	5.81903148184062	5.77120681953745	6.05983605495264	6.06688799761852	5.53428704039434	-0.225442111825272	0.41284404577029	0.707849944017664
Merged-chr4-140572585-4	chr4	140572496	140572696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001112723, intron 14 of 26)	intron (NM_001112723, intron 14 of 26)	76160.0	NM_001112723	72754.0	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	5.70095518310186	5.92529249803668	6.00848051795071	5.72396491160966	5.60182434538714	5.54124480171041	5.39898267575046	5.39098317047464	-0.583217765849521	0.02999082553186	0.167232038427909
Merged-chr2-124790271-4	chr2	124790177	124790377	+	984.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136696.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.94199864644762	5.07522221568868	4.86062692034841	5.42113227465128	5.55228331500474	5.43460577546366	5.32332483607016	5.74150712828178	0.718938542358829	0.0265144710090739	0.154504587143256
Merged-chr10-37222842-3	chr10	37222760	37222960	+	838.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83934.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	3.67984600832502	4.05986868866094	3.97779044315161	3.56824014794548	3.8386396414143	3.95930532381386	3.82120600059239	3.29514673184726	-0.233219833335941	0.655632474967439	0.8562015216165
Merged-chr15-81694147-4	chr15	81694055	81694255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164320, exon 3 of 6)	exon (NM_001164320, exon 3 of 6)	3132.0	NM_001164320	214685.0	Mm.393287	NM_001164320	ENSMUSG00000063765	Chadl	AY100452|D930017K21Rik	chondroadherin-like	protein-coding	6.23574026320634	6.44896514867747	5.80052319056517	6.08950384874339	6.03263467970685	6.14718598279858	6.04882600629821	5.96660565828288	-0.180489587877392	0.474720890412549	0.751855589262771
Merged-chr4-138001904-2	chr4	138001795	138001995	+	712.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	4070.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	2.81629840026814	2.72862821676276	2.57940456357925	2.26694684187126	3.13071380515907	3.37230700382014	3.23651512942904	3.49061906165346	3.56412540462057	3.33505546950564e-06	0.000103481217639033
Merged-chr5-148554893-4	chr5	148554778	148554978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2090.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	5.32986119253425	5.86954387343142	6.18198836547765	5.84480910120085	6.14941239525408	6.31830459742735	6.27467312231346	6.01740603396314	0.549635581635293	0.0444295698518011	0.214909851362805
Merged-chr11-87591982-4	chr11	87591861	87592061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357901)	promoter-TSS (NM_001357901)	-205.0	NM_001357901	170749.0	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding	9.37642742732385	9.40819201636937	9.44807982991862	9.31598402516894	9.52205273897247	9.61556926835362	9.61945145186967	9.50647500872545	0.221062184117775	0.0929680419158865	0.33357198730702
Merged-chr2-80316166-1	chr2	80316066	80316266	+	981.0	f1_c57bl6.idr	intron (NM_024181, intron 1 of 22)	intron (NM_024181, intron 1 of 22)	700.0	NM_024181	66861.0	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	2.93094651738254	2.93713490333839	3.16151756626322	2.63303853459115	2.80146290841713	3.1049956740946	2.64618623867827	3.1595663917304	0.0780154340071695	0.906566931190681	0.965374636270914
Merged-chr12-69333697-4	chr12	69333579	69333779	+	897.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025441, intron 16 of 32)	B3|SINE|B2	23497.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	4.28241566826372	4.26748274536044	4.18547873165264	3.94014772630518	4.76258596888245	4.54779624133671	4.51676296011914	4.64583844482885	1.10290641111239	0.00342867675944844	0.0354465915847176
Merged-chr13-30834557-3	chr13	30834463	30834663	+	793.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025588, intron 23 of 27)	intron (NM_025588, intron 23 of 27)	85330.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	3.62281279067411	3.75613068224502	4.00561254292214	3.46663796732063	3.59670409437332	3.62401750560575	3.90247228619229	3.56453924824925	-0.120857642621682	0.807772914379955	0.925869054309997
Merged-chr4-99061691-3	chr4	99061576	99061776	+	753.866638	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026082, intron 11 of 47)	intron (NM_026082, intron 11 of 47)	30722.0	NM_013913	30924.0	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	3.21713972687578	3.28781401866508	3.28329047475304	3.39631177468277	3.63932963475735	3.74013249738922	3.33403977441727	3.84513680175689	1.13799102175032	0.0291465226716962	0.164135894521787
Merged-chr1-55594150-3	chr1	55594057	55594257	+	865.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	L1_Mus2|LINE|L1	188211.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	3.58253460123663	3.73652145167268	4.49217178613819	3.45819243639175	3.445701583241	3.28640670956189	3.78691190245374	3.98983992606739	-0.655923327765218	0.272291876235592	0.583779019836542
Merged-chr5-120503621-4	chr5	120503535	120503735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023625)	promoter-TSS (NM_023625)	-12.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	6.14458463268214	6.3649118418579	5.72955308885033	5.85992558043272	6.55608903840964	6.85646189151453	6.37603232735308	6.33465153217053	0.753270705302715	0.0039426319201807	0.0396093997807399
Merged-chr7-25659168-4	chr7	25659083	25659283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138586)	promoter-TSS (NM_138586)	30.0	NR_104358	27998.0	Mm.27853	NM_138586	ENSMUSG00000061286	Exosc5	D7Wsu180e	exosome component 5	protein-coding	7.41544897903408	8.02266949908199	7.71845404004665	7.61199042567864	7.78731947737823	8.08395920572343	7.66450923970876	7.65501107614541	0.125906603444831	0.536160081890185	0.790213033830861
Merged-chr12-25092695-8	chr12	25092606	25092806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3386.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	6.17271359116902	6.1470688605369	6.17380518060767	5.96964434635276	6.15780822737175	6.32910077359281	5.93086625143697	6.16939015683059	0.0698760434257941	0.767311690719049	0.909004900573458
Merged-chr9-108517308-7	chr9	108517224	108517424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175143, intron 1 of 9)	CpG	237.0	NM_175143	69232.0	Mm.335449	NM_175143	ENSMUSG00000006673	Qrich1	2610028H07Rik|b2b2404Clo	glutamine-rich 1	protein-coding	6.3460962368878	6.65819624945741	5.72850941796831	6.09963242978405	6.13281536039454	6.52355209816231	6.68683385112041	6.64723911871332	0.382203823973542	0.176741555849124	0.47190839260548
Merged-chr4-123718276-4	chr4	123718194	123718394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002445).2	promoter-TSS (NR_002445).2	-108.0	NM_001030274	595136.0	Mm.42805	NM_001030274	ENSMUSG00000028648	Ndufs5	AI256693	NADH dehydrogenase (ubiquinone) Fe-S protein 5	protein-coding	7.2389404860772	7.33011811954646	6.52039033531376	6.94603562164673	7.26938364455902	7.15343840536607	6.86257018387848	6.7024763783683	-0.0330336838734495	0.895074190661765	0.96073210268323
Merged-chr15-79028436-4	chr15	79028327	79028527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008197, exon 1 of 1)	5' UTR (NM_008197, exon 1 of 1)	215.0	NM_008197	14958.0	Mm.24350	NM_008197	ENSMUSG00000096210	H1f0	D130017D06Rik|H1(0)|H1fv	H1 histone family, member 0	protein-coding	5.36461039076472	5.32559015465084	5.16987071463579	5.29776374584323	5.7273870517142	5.57026951617958	5.63212067848481	5.55741265841502	0.584737603479036	0.0298417878963179	0.166635963024399
Merged-chr1-58713200-4	chr1	58713088	58713288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009805)	promoter-TSS (NM_009805)	-98.0	NM_207653	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	7.09103080357026	7.25065957290471	6.81154317445406	6.89300983299245	7.3154760110864	7.47786321818399	7.12619806125541	7.22330112485649	0.371237919565147	0.0658695060559992	0.273255948919453
Merged-chr16-91485086-4	chr16	91484985	91485185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010508)	promoter-TSS (NM_010508)	-130.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	8.77483454994089	9.09158382857844	8.67304681298886	8.7454294009521	8.9611648315806	9.07962948159758	8.81650458907062	8.64958514072015	0.0689647843535274	0.69019506067771	0.87377977774578
Merged-chr1-13363827-1	chr1	13363727	13363927	+	684.0	f0_balb.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	8602.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	3.08151801989914	3.34377843398274	3.35544608584783	3.12927234611627	2.98189142302273	3.06230115957364	2.94485443159224	3.01803574505842	-0.939831530958686	0.106920950399651	0.360603000639505
Merged-chr4-128711605-4	chr4	128711490	128711690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 6 of 14)	intron (NM_018774, intron 6 of 14)	-15981.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	5.6534145034953	5.83881035334754	5.51557638205	5.43863518342882	5.88498433380442	5.85557023005218	5.90574747795652	5.75139837292454	0.400161531618086	0.124846787768074	0.39218277534506
Merged-chr2-79635238-4	chr2	79635146	79635346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080558)	promoter-TSS (NM_080558)	-179.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	8.79589242561099	8.63315289295372	8.75996060378559	8.8699099767983	9.00271545199572	8.9709408281852	9.22691364273937	8.87475620221578	0.318946843750475	0.0391050111634424	0.198804460724084
Merged-chr16-91372948-8	chr16	91372874	91373074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001110498, exon 1 of 7)	5' UTR (NM_001110498, exon 1 of 7)	191.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	5.2607285206909	6.05930772764257	6.01024748598301	5.82002534525181	5.30309906444282	5.6924033480943	5.4879015155892	5.67374111256093	-0.477082191769235	0.116523078411749	0.377652135428007
Merged-chr3-144580185-6	chr3	144580094	144580294	+	842.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053102, intron 2 of 4)	B1F1|SINE|Alu	9767.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	3.66206883356056	3.8224451333764	3.8319887941473	3.79519043186777	3.9509914135914	4.00591748657637	3.96469439969715	4.30923266793367	0.775877604191426	0.0749194806420455	0.295292857446157
Merged-chr6-98993414-4	chr6	98993322	98993522	+	980.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 8 of 17)	intron (NM_001197321, intron 8 of 17)	34876.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	4.87902506526224	4.83489680246986	4.57491432281122	4.60626200439595	4.92492287617232	4.87113783644083	4.75121182709084	4.48314680685493	0.107820859178676	0.758439175665483	0.905135209683573
Merged-chr1-121462107-4	chr1	121462009	121462209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029955, intron 9 of 23)	intron (NM_029955, intron 9 of 23)	31042.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	5.92048134907797	5.92888655357064	6.13141269883418	6.31266481652648	6.07538925530516	5.87509087740129	5.55560772029074	5.93992516519637	-0.336643013890128	0.205190239851947	0.508840054434091
Merged-chr15-58272649-4	chr15	58272527	58272727	+	901.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51542.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	5.07648937907316	4.5870201258442	5.40753353412222	5.21469186963177	4.48006500380465	4.80904875214625	4.95476041784909	4.86932642822783	-0.643792701359687	0.0821250417167826	0.311117054891632
Merged-chr8-94666665-4	chr8	94666572	94666772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024191)	promoter-TSS (NM_024191)	72.0	NM_024191	107566.0	Mm.393247	NM_024191	ENSMUSG00000031776	Arl2bp	1700010P10Rik|1700027H16Rik|6330544B05Rik|AI482273|AI849834|BART|Bart1	ADP-ribosylation factor-like 2 binding protein	protein-coding	6.56318567028198	6.66464723901416	6.77017581951206	6.56487462801927	6.42954790028148	6.49576493137476	6.89979000571805	5.95800577039528	-0.220637397560521	0.386301723099084	0.687552275421561
Merged-chr3-7496750-4	chr3	7496647	7496847	+	980.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6679.0	NM_173181	67306.0	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	4.85822251778542	5.07673550476908	4.64251190577592	5.40766774403694	5.39345866193062	5.14948157111891	5.15072584299983	5.29158082206623	0.371480870007285	0.286802726188709	0.598454467247327
Merged-chr9-58583366-6	chr9	58583263	58583463	+	782.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151824, intron 1 of 7)	intron (NR_151824, intron 1 of 7)	1123.0	NM_001357751	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	4.44668358317849	4.85127200259172	4.3516540186248	4.68865579100756	4.81018063056043	4.62435623224225	4.63812370172223	4.96731431412033	0.337580040459313	0.353889715515521	0.660691288377465
Merged-chr6-125008950-4	chr6	125008880	125009080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175557)	promoter-TSS (NM_175557)	-258.0	NM_001252083	269800.0	Mm.108677	NM_175557	ENSMUSG00000038346	Zfp384	BB163993|C130073D16Rik|Ciz|NP|Nmp4	zinc finger protein 384	protein-coding	8.21188801227903	8.28957800516134	8.22518231761193	8.1336544894649	8.34799929706179	8.59563091727972	8.49044894559645	8.26072697781137	0.271788496692805	0.0870179880713695	0.321708480389135
Merged-chr3-69669353-1	chr3	69669253	69669453	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-52702.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	4.05028169408748	3.44942440016934	3.88084710958592	3.98348127706779	3.54210589668315	3.6304944556053	3.50119363388505	3.57113005975793	-0.936354714332551	0.0620455852527145	0.263477303125186
Merged-chr14-73507826-4	chr14	73507763	73507963	+	822.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2186.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	3.71600358471808	3.62520158260067	3.71651873679482	3.79848854261272	3.57268883217263	3.88768411605246	3.84921812650113	3.81582368090015	0.174143717726877	0.705353790768559	0.881685774219734
Merged-chr9-62980888-4	chr9	62980723	62980923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019663)	promoter-TSS (NM_019663)	56.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	6.40539135848615	6.71289429886903	6.52674130109855	6.29016610698039	6.63780569477179	6.61850932903864	6.28077800372495	6.74626132103997	0.143623923536377	0.533182365130464	0.788490786098902
Merged-chr11-21369715-3	chr11	21369609	21369809	+	951.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290634, intron 1 of 9)	intron (NM_001290634, intron 1 of 9)	920.0	NM_139297	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	4.18235102417913	4.37972638644338	4.34804955596182	4.41163463920577	3.59905087172922	4.11788187424422	3.75779783315948	3.88501833619685	-1.35131104704376	0.00244506252805708	0.027308505520881
Merged-chr7-82811752-4	chr7	82811660	82811860	+	951.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-55573.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	4.6306585336517	4.51933091331539	5.1234340151479	5.13304724794018	4.92139933396495	5.26460272333827	5.3763894235994	5.15090766066265	0.552076864203396	0.124347362689037	0.391373907974486
Merged-chr10-46012127-4	chr10	46012046	46012246	+	889.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	204442.0	NR_040624	320363.0	Mm.123343	NR_040624	ENSMUSG00000110874	D030045P18Rik	-	RIKEN cDNA D030045P18 gene	ncRNA	3.60511568274162	3.4820380848616	3.7155011619964	3.80656024745851	3.91306369012992	3.8338232456451	3.847832215526	3.76497866861888	0.514054148264614	0.266822501010657	0.57842963999018
Merged-chr4-143288631-3	chr4	143288549	143288749	+	969.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010329, intron 1 of 5)	intron (NM_010329, intron 1 of 5)	10915.0	NM_010329	14726.0	Mm.2976	NM_010329	ENSMUSG00000028583	Pdpn	E11|Gp38|OTS-8|RANDAM-2|T1-alpha|T1a|T1alpha	podoplanin	protein-coding	3.80297850216188	3.91534692214537	4.06296751627573	3.82221792140087	3.08991683223739	3.59585575161396	3.46521506323123	3.47612900366401	-1.63775952407107	0.00222543421824291	0.0253974959468194
Merged-chr10-128092550-7	chr10	128092458	128092658	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054078)	promoter-TSS (NM_054078)	-225.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	4.82861293256919	4.88385739120191	5.08512072825735	4.55583102918262	5.11012711607256	5.29172707151404	5.37774522176772	5.40148096974443	0.891030973264022	0.00571599767153641	0.0524653682636671
Merged-chr5-30155142-4	chr5	30155037	30155237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178878)	promoter-TSS (NM_178878)	-116.0	NM_145558	231086.0	Mm.291463	NM_145558	ENSMUSG00000059447	Hadhb	4930479F15Rik|Mtpb|TP-beta	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit	protein-coding	5.77331697227895	6.02379757017588	5.86654378816026	5.6533625216039	5.48901831001493	6.06213008907236	5.15056697262846	5.72149764780104	-0.31430985469572	0.302829169975023	0.615331929479079
Merged-chr5-31180022-4	chr5	31179888	31180088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027901, exon 1 of 19)	5' UTR (NM_027901, exon 1 of 19)	156.0	NM_027901	71752.0	Mm.271923	NM_027901	ENSMUSG00000106864	Gtf3c2	1300004C11Rik|2610510G03Rik|AI225816|AU041069|TFIIIC110|mKIAA0011	general transcription factor IIIC, polypeptide 2, beta	protein-coding	6.5462900674038	6.72682946035998	6.56388437181824	6.37948051895552	6.73622304320751	6.62124021372701	6.66874347660806	6.88759463734488	0.263952210985647	0.212232141027136	0.517096993433645
Merged-chr10-5807723-3	chr10	5807617	5807817	+	825.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2252.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	3.71728006865308	3.75431882891033	4.23405116717636	3.99017856794729	3.74531757283791	3.53706308654535	3.47411261871781	3.54608077140403	-1.06906879423243	0.0324993487060077	0.176537071010125
Merged-chr17-18968551-4	chr17	18968462	18968662	+	688.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	54240.0	NM_001104549	627367.0	Mm.384131	NM_001104549	ENSMUSG00000091491	Vmn2r97	EG627367|Vn2r97	vomeronasal 2, receptor 97	protein-coding	3.34715597218223	3.18510617441866	3.70338322571609	3.45302934880175	3.90410655241534	4.0198507012814	3.96376977136739	3.64818957446845	1.39065231347959	0.00565148987502018	0.0520263059769867
Merged-chr5-137705457-2	chr5	137705357	137705557	+	879.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-20704.0	NM_001303266	231801.0	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	3.20683622914034	3.11706368730357	3.30433058075249	2.83099413598197	2.67694399299624	2.8316400660493	2.78527755120461	2.56820283628845	-1.92936929690024	0.00596441976892298	0.054006034185494
Merged-chr9-64242504-4	chr9	64242408	64242608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008927, intron 1 of 10)	MTC|LTR|ERVL-MaLR	7307.0	NM_033607	93841.0	Mm.390180	NM_033607	ENSMUSG00000035337	Uchl4	-	ubiquitin carboxyl-terminal esterase L4	protein-coding	5.46045927271976	5.81692155014512	5.63062235060396	5.17119141271953	5.91381053515752	5.88207863116874	5.65353325644944	5.86625670827086	0.517350349619977	0.0708551488355072	0.285421541537214
Merged-chr10-117277958-4	chr10	117277852	117278052	+	961.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_017372, exon 4 of 4)	3' UTR (NM_017372, exon 4 of 4)	4320.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	5.03386976828778	5.16762822254241	5.54658025848024	5.90382544722317	4.97685241477722	4.61285694781804	4.86314249004713	4.71626860187918	-1.2663414610118	0.000586967330745665	0.00879018464867362
Merged-chr2-90522107-4	chr2	90521996	90522196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	MIRb|SINE|MIR	-42922.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.61187041512522	6.08315211268972	6.30167313392257	6.37446467843805	5.98009859730747	6.11188324631005	5.83160427682205	5.69756018078419	-0.678622928952962	0.00726198217715569	0.0625409109967048
Merged-chr11-113437584-1	chr11	113437484	113437684	+	638.5	f0_balb.idr	intron (NM_027216, intron 5 of 9)	intron (NM_027216, intron 5 of 9)	128231.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	2.96960274884776	2.90750462564098	3.07874359813929	3.21984601796094	2.43044214450937	2.89571518172408	2.49218394436429	2.57471276949078	-2.41767554955783	0.00199147310877951	0.0233104858427589
Merged-chr19-57762703-3	chr19	57762601	57762801	+	964.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181415, intron 24 of 28)	intron (NM_181415, intron 24 of 28)	151667.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	4.00046774959779	4.3415586194087	4.19474825108319	4.43045897793167	3.94541476362969	4.12421110531632	4.26220511434462	4.09908490570118	-0.403547164329355	0.333988568960057	0.644743229279885
Merged-chr13-95949566-4	chr13	95949484	95949684	+	854.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-57662.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	4.26863881107026	4.26236734757349	4.67795270885011	4.72178350332212	4.51315927659143	4.24253410751772	4.25102711681502	4.63944356125445	-0.194609487594371	0.628853078937155	0.841823003934767
Merged-chr5-24387863-3	chr5	24387702	24387902	+	812.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001002897, exon 6 of 14)	exon (NM_001002897, exon 6 of 14)	4341.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	3.51751480714877	3.46301599569891	3.30604603047442	3.19731750456963	3.32867353799729	3.4186105522857	3.23560607483385	3.18390318852492	-0.268472057749032	0.616736660323807	0.835150401688917
Merged-chr13-3611167-4	chr13	3611060	3611260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134063)	promoter-TSS (NM_134063)	-52.0	NM_001360838	105203.0	Mm.221609	NM_134063	ENSMUSG00000033799	Fam208b	AI645998|Pap20|mKIAA2006	family with sequence similarity 208, member B	protein-coding	8.9237972526972	9.20562516662247	8.99180681339299	8.89941342259346	9.30322793060684	9.34787072080343	9.21959162840559	8.88882424416584	0.238708563583503	0.15155898565865	0.435253719845424
Merged-chr8-70673670-4	chr8	70673566	70673766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015816, intron 1 of 4)	CpG	435.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	6.80003044743785	7.07927295010472	6.28654389505157	6.68214279948196	6.99581668070369	7.01917582744829	6.83489941459063	6.85149986298214	0.258719435889744	0.262961576037788	0.574735947525663
Merged-chr1-155901511-4	chr1	155901418	155901618	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039184, exon 24 of 38)	exon (NM_001039184, exon 24 of 38)	71737.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	4.95408285897613	4.90800913851122	4.82903184418054	5.24170390170288	5.9128000545296	5.59589283473134	5.73247418934763	5.41781372605821	1.18221878501664	0.000169530331509564	0.00317052009104553
Merged-chr12-112517161-4	chr12	112517048	112517248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-5988.0	NM_178915	104885.0	Mm.37751	NM_178915	ENSMUSG00000054013	Tmem179	AI839735	transmembrane protein 179	protein-coding	6.01743108788552	6.12054670295872	6.03925945187941	6.07465490418987	5.98827563450396	5.83516188841057	5.60104385296335	5.81022858507887	-0.382244192723753	0.12058225623229	0.384419062854759
Merged-chr1-74332487-4	chr1	74332392	74332592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019999)	promoter-TSS (NM_019999)	-118.0	NM_019999	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	7.40404709139134	7.39554752096813	7.28508166625638	7.29503939151169	7.13602150210693	7.15412705377333	7.33974962269785	7.21524140660301	-0.178863149020382	0.315578654370368	0.627426670937105
Merged-chr2-160237548-3	chr2	160237441	160237641	+	941.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89953.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	4.00895985592782	3.55671836709253	4.19215097421672	4.39052465945888	3.88920073619401	3.85922226185611	3.94300284803348	4.42119931888431	-0.0852344441660577	0.865368980959356	0.949604543216002
Merged-chr17-29671206-4	chr17	29671094	29671294	+	985.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028791, intron 2 of 23)	MTD-int|LTR|ERVL-MaLR	10599.0	NM_028791	74157.0	Mm.390979	NM_028791	ENSMUSG00000024019	Cmtr1	1300018I05Rik|AI451264|Ftsjd2|MTr1	cap methyltransferase 1	protein-coding	4.71041668355967	5.84686028118494	5.04235217432478	3.86560905476787	5.10589501045437	5.15252915240425	4.72925713978781	4.32441959168777	-0.408253893204813	0.605010435398821	0.828684273147198
Merged-chr3-85571467-4	chr3	85571379	85571579	+	942.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2650.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	4.76733074520567	4.52644043503119	4.91107065046068	4.85857673488422	4.83837932537891	4.86431307077047	4.81848819052134	4.80220229805268	0.108616718887238	0.744540550824018	0.899296531468148
Merged-chr18-54981214-2	chr18	54981114	54981314	+	879.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	8966.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.41844224195011	3.329909165832	3.46998320509568	2.97973739351492	3.00443572329906	3.17378533351999	3.45472883452986	3.2506816461514	-0.284500911009096	0.626048216507554	0.840227887296901
Merged-chr12-105971414-2	chr12	105971285	105971485	+	643.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38878.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	2.72213397602978	2.72283983254937	2.79785517058	2.79319577247688	3.22202942617064	3.17810074614627	3.11067650644277	3.55679329758149	2.12595617844374	0.000595249044638341	0.00887922984929475
Merged-chr1-84321593-4	chr1	84321500	84321700	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-36955.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	5.58120285820717	5.39135558575062	5.81816092228427	5.99488463737142	5.39418931623269	5.56214833500999	5.0169362161668	5.2550407066824	-0.703369835356073	0.0230217033618225	0.140486370719648
Merged-chr10-8866324-5	chr10	8866194	8866394	+	763.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	19776.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.94975710125488	2.9908191938479	2.95014726821436	3.07544147228775	2.4210849338348	2.86735161588623	2.87949781577393	2.82540698061983	-1.11544614179968	0.111346885864392	0.368698618619051
Merged-chr14-120762973-4	chr14	120762881	120763081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-148213.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	7.50142804197901	7.20103152745873	7.07227147169889	7.59684736723282	7.24130472575111	7.17257722008266	7.28491809935665	7.30599021831566	-0.160919158850319	0.423918844310307	0.715789809492666
Merged-chr12-84614201-4	chr12	84614124	84614324	+	983.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008992, intron 3 of 18)	intron (NM_008992, intron 3 of 18)	3242.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	5.3357161360576	5.5711410876946	4.98707908103937	5.31581319528028	5.19083519532082	4.83921679221801	4.9264934224963	5.01975269408861	-0.583650897160482	0.0710319292244158	0.285874798725811
Merged-chr5-105599023-4	chr5	105598914	105599114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	79543.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	7.88239971833303	7.98721400756984	8.03247757746017	7.7572411784593	7.75090252602568	7.68754918817037	7.92875979915249	7.35028720242774	-0.281726100462655	0.137489161264232	0.412460170036726
Merged-chr1-143985263-4	chr1	143985178	143985378	+	863.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18871.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	4.16204282902935	3.7710409660752	4.3710381129113	4.5203223805501	3.97003355308156	3.92086191056961	4.31175078619536	3.96516579246894	-0.49847660809865	0.28107088259806	0.593153291080506
Merged-chr14-20836773-4	chr14	20836679	20836879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008873, intron 1 of 10)	intron (NM_008873, intron 1 of 10)	117.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	6.06736840778265	6.85709685660952	5.71077470681828	5.66499676971876	5.73429642759281	6.38139526387422	5.59705965841298	6.06407037002202	-0.302301544541553	0.399770598659975	0.697861775510926
Merged-chr3-145729769-4	chr3	145729694	145729894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28898.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	5.52214343443541	5.02552479121396	5.29640114735398	5.58017490452976	5.23947829003136	5.27330497544813	5.57014645292219	5.46629457541143	0.00894120602002246	0.976726118203619	0.991709440769007
Merged-chr8-72492790-4	chr8	72492702	72492902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177766)	promoter-TSS (NM_177766)	-188.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	9.30635423700804	9.43852839999421	9.35541541238519	9.30757532131653	9.04722735349982	9.32419617784586	9.15706182594636	9.11763365663087	-0.233928812147329	0.0984940347228624	0.343994301133918
Merged-chr7-92886391-4	chr7	92886275	92886475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	intron (NM_028243, intron 1 of 8)	11122.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	6.72037515525341	6.93634325602601	7.22423201749444	6.83906640339698	6.93095420057615	6.66872163417775	6.73161583369002	6.70160615688133	-0.236607715812446	0.269046629170864	0.580620459637407
Merged-chr4-94477163-4	chr4	94477077	94477277	+	820.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	79619.0	NM_026368	67770.0	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	4.29550813812598	3.66066044315083	3.53713469147355	3.80198428777501	3.73675567775621	3.65496280494463	3.79466420434928	3.40809426361067	-0.576830928231961	0.26787092917267	0.579713969205978
Merged-chr1-191950468-4	chr1	191950361	191950561	+	883.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26909.0	NM_001177900	74023.0	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	4.28090748672887	4.38240538898661	4.54192289150736	4.52793646756447	4.42219510899945	4.36001415910555	4.76681403122505	4.45803004247287	0.149537007509378	0.689756832616944	0.873623035418265
Merged-chr10-4612461-2	chr10	4612361	4612561	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007956, intron 1 of 8)	intron (NM_007956, intron 1 of 8)	472.0	NM_007956	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	3.68373254684052	3.34756945200682	3.63209030258189	3.58271874782488	3.58445564996302	3.51475745795815	3.94016279592101	3.73215978255838	0.420923358513565	0.390281201540294	0.690456470756986
Merged-chr1-53313681-4	chr1	53313578	53313778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104361)	promoter-TSS (NR_104361)	54.0	NR_104360	72085.0	Mm.482256	NM_028091	ENSMUSG00000026096	Osgepl1	2610001M19Rik|AA416452	O-sialoglycoprotein endopeptidase-like 1	protein-coding	6.37165325755059	6.08740015796122	6.57024075748969	6.37619750022112	6.37945564671337	6.35774011661208	6.63841692375171	6.21702053516454	0.0705016815956083	0.763728398038642	0.907339369485629
Merged-chr2-84387523-4	chr2	84387422	84387622	+	945.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018782, intron 2 of 15)	intron (NM_018782, intron 2 of 15)	37744.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	4.26375945343229	4.66368937095914	4.6526824042179	4.6475171367175	5.52232497685512	4.70064058531131	5.14027436697178	4.8803000251379	1.0816214817387	0.00431460083385955	0.0425240892762793
Merged-chr15-73068244-4	chr15	73068166	73068366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7062.0	NM_001164643	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	4.97005793740673	4.65078405318986	4.43235720277197	5.00255367905114	5.32005968574853	4.92556447732055	5.04363573327336	4.93321513709407	0.542313645764383	0.127294580378676	0.396963896463253
Merged-chr18-32353310-4	chr18	32353262	32353462	+	960.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-23855.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	5.2817137840899	5.06111472591369	4.63644927900996	4.98745753352429	5.00234570786658	4.81503519794417	4.89059292510141	4.79918761650107	-0.248179899991332	0.462684796856438	0.744191285656537
Merged-chr11-65794535-4	chr11	65794414	65794614	+	952.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6155.0	NM_001316367	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	4.99763358843778	4.46543290439342	4.93082570404082	5.09029375055076	4.92052913399152	5.0328651532304	4.97409740598316	4.78053032358886	0.0528290839975031	0.879088957924707	0.954746715269166
Merged-chr15-89128650-4	chr15	89128558	89128758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028449)	promoter-TSS (NR_028449)	42.0	NR_028448	170787.0	Mm.203954	NM_199198	ENSMUSG00000062906	Hdac10	AW548891|Hd10	histone deacetylase 10	protein-coding	6.49339573248256	6.35751854818217	5.86328562968775	6.36938586165014	6.28448178517321	6.51703325475665	6.23467766970673	6.56748361385475	0.158129813825076	0.520054898503628	0.780488058121568
Merged-chr7-80114765-4	chr7	80114706	80114906	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173011, intron 1 of 10)	intron (NM_173011, intron 1 of 10)	544.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	4.77735807436718	4.66564390779313	4.9821164275814	4.6988536869384	4.79680735204816	4.71207200591181	4.37548146688599	4.97867968665759	-0.0897058595717135	0.801815908881995	0.923559097579232
Merged-chr4-16013341-4	chr4	16013249	16013449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355616, intron 1 of 5)	intron (NM_001355616, intron 1 of 5)	489.0	NM_001355615	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	5.99149147187677	6.3059065773172	6.15732359265275	6.14739867313075	5.95124219460188	5.8474480670958	5.74802056027053	6.13347971291632	-0.356572886695962	0.143982536175245	0.422642851071835
Merged-chr10-61114370-4	chr10	61114271	61114471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 4 of 14)	intron (NM_009163, intron 4 of 14)	25040.0	NM_025273	13180.0	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	7.55568986197744	7.66086925095778	7.67863107352471	7.87656052269347	7.58072174473971	7.53723273489968	7.75176349022217	7.8215264554633	-0.041026220716172	0.818639771389305	0.930475502974644
Merged-chr11-77454008-5	chr11	77453950	77454150	+	910.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001291190, exon 14 of 14)	exon (NM_001291190, exon 14 of 14)	-9863.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	2.70511169911535	2.85571004469643	2.705455682539	2.42254005737751	2.5553961055272	2.68044997745976	2.63287357310595	2.57391982418931	-0.332926957857158	0.626220817824173	0.840349205482018
Merged-chr19-5729227-8	chr19	5729044	5729244	+	854.8402710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181452, intron 1 of 1)	intron (NM_181452, intron 1 of 1)	522.0	NM_181452	17826.0	Mm.391142	NM_023166	ENSMUSG00000024939	Fam89b	1110021A21Rik|MMTV|Mtvr2	family with sequence similarity 89, member B	protein-coding	3.62538509076278	3.86656119705528	3.79380761832523	3.87708174505963	4.24407589820718	3.80230892175759	3.77863885455131	3.89253043106176	0.434145088776165	0.346875681333149	0.654983661969764
Merged-chr16-20539829-4	chr16	20539740	20539940	+	818.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302970, intron 3 of 10)	intron (NM_001302970, intron 3 of 10)	4360.0	NM_009679	11773.0	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	3.87023387112035	3.96700444334963	3.92057737931135	3.82607314786612	3.69500373823293	4.0910682908945	3.99692531872306	3.81685262281995	0.0218108673560509	0.960683600525738	0.986018439623899
Merged-chr6-72096959-1	chr6	72096859	72097059	+	855.0	f0_balb.idr	promoter-TSS (NM_011375)	promoter-TSS (NM_011375)	-649.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	3.63265933256039	3.72459808297298	3.73892053522842	3.65036503618342	3.60618550864835	3.69355132725071	3.67233896711553	3.92489824795148	0.124442705305353	0.787624213339763	0.917636852222575
Merged-chr4-71338816-4	chr4	71338726	71338926	+	933.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-803898.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	4.36935551704718	4.62718347648087	4.70526279487672	4.73089178645471	4.69595718929955	4.29113965631274	4.78794212410796	4.73842723123247	0.049275720241031	0.893571370724964	0.960270500442851
Merged-chr18-23753675-4	chr18	23753572	23753772	+	933.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162941)	promoter-TSS (NM_001162941)	-53.0	NM_001162941	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	4.52922769639549	4.34152181983325	4.69171634588525	4.7286522632659	4.91501199235793	4.70468542738703	4.84490450863396	4.52707993045791	0.36618346409954	0.309363928437658	0.621636085658021
Merged-chr6-120822826-4	chr6	120822723	120822923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007510)	promoter-TSS (NM_007510)	-125.0	NM_007510	11973.0	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	7.69781862241485	7.78350043240151	7.44920369265653	7.32575947414716	7.89283229379881	7.92394514853005	7.5781149285524	7.41407559489255	0.199236184365719	0.336026012859987	0.646205267591414
Merged-chr8-56067062-1	chr8	56066962	56067162	+	766.5	f0_balb.idr	intron (NM_080438, intron 5 of 9)	intron (NM_080438, intron 5 of 9)	126237.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	3.96058565147784	3.76055745227175	4.17664083907472	3.94221613611737	3.74765857566089	3.76134679482519	3.74322160723529	4.00485821710403	-0.419689408515207	0.352717413577682	0.659679630621423
Merged-chr6-34384255-4	chr6	34384165	34384365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172398)	promoter-TSS (NM_172398)	18.0	NR_149754	67861.0	Mm.70371	NM_172398	ENSMUSG00000061758	Akr1b10	2310005E10Rik|Akr1b16	aldo-keto reductase family 1, member B10 (aldose reductase)	protein-coding	6.51262876341866	5.93952117434115	6.32897319428178	6.39793516699376	6.25625994865424	6.17801080660037	6.44897295054472	6.34240623814456	-0.00559574649721278	0.981410095507197	0.993361854006063
Merged-chr1-136582782-3	chr1	136582685	136582885	+	855.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-42116.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	3.27196151265826	3.40511281283949	3.63952784501191	3.24967733451253	3.46528138887151	3.25597633454977	3.19953103195974	3.44089326527161	-0.152158877577992	0.777376024502956	0.913165246826363
Merged-chr10-13189755-4	chr10	13189650	13189850	+	920.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181470, intron 3 of 10)	intron (NM_181470, intron 3 of 10)	3387.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	4.83545160666231	4.77111873182788	4.52189053185999	4.7218075910501	5.07564181896339	4.51180837007809	4.88011974714308	4.4738697066603	0.119528986111937	0.745891704818701	0.899830949074443
Merged-chr10-18318692-3	chr10	18318615	18318815	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-83734.0	NM_144820	215814.0	Mm.296565	NM_144820	ENSMUSG00000059554	Ccdc28a	1700009P13Rik|AI480677	coiled-coil domain containing 28A	protein-coding	2.83238492817571	2.84101471779029	2.95082953174099	2.73102411479701	2.63622254595226	3.00236302315989	2.62559032470926	2.76809034451378	-0.348112902575998	0.588686931876057	0.819824733836119
Merged-chr2-118546773-3	chr2	118546696	118546896	+	783.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_138313, exon 3 of 5)	exon (NM_138313, exon 3 of 5)	803.0	NM_001331221	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	3.73058861457942	3.82122927747628	3.45721052781889	3.31816324226788	3.74072666717494	3.74682370480768	3.38332163579468	3.77725952272789	0.259235093173121	0.613905444688025	0.833597398844887
Merged-chr11-51606912-4	chr11	51606813	51607013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010448)	promoter-TSS (NM_010448)	-32.0	NM_010448	15384.0	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	7.85633600305929	8.21904449242031	7.80460442173735	7.61438315621142	8.07707002560576	8.01998399738136	7.70375867014466	7.67794951162781	-0.00463737740091134	0.981976344105418	0.993573193675204
Merged-chr3-59263823-4	chr3	59263712	59263912	+	812.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357008)	promoter-TSS (NM_001357008)	-827.0	NM_001357010	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	4.09833696295951	3.92918266061735	3.74856595899871	3.76270784046833	4.27114396928472	3.98010136011899	4.12307710175572	3.74658415460227	0.457824911669252	0.30845047537479	0.620793493346942
Merged-chr14-19759939-3	chr14	19759841	19760041	+	680.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008695, intron 2 of 20)	intron (NM_008695, intron 2 of 20)	8684.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	3.92970103989834	3.54772131228865	4.27683746912858	3.85156877937589	3.60358018400954	3.36026215509666	3.61699978200978	3.44995625046467	-1.25343407100802	0.0173062708151049	0.11604160161844
Merged-chr14-20388930-4	chr14	20388819	20389019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134081)	promoter-TSS (NM_134081)	-9.0	NM_134081	108671.0	Mm.2871	NM_134081	ENSMUSG00000021811	Dnajc9	5330419I01Rik|AU020082	DnaJ heat shock protein family (Hsp40) member C9	protein-coding	7.34560309406353	7.46261845851808	7.44608299333493	7.43997520985891	7.60242689451625	7.64199193033024	7.12198187439851	7.39232843023811	0.0445290825283894	0.816304527187624	0.929288123801486
Merged-chr17-48247690-4	chr17	48247586	48247786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021407)	promoter-TSS (NM_021407)	-43.0	NM_021407	58218.0	Mm.302438	NM_021407	ENSMUSG00000041754	Trem3	BB134760	triggering receptor expressed on myeloid cells 3	protein-coding	6.94587401626961	7.119387703379	6.84059372088157	7.02674732689802	6.78261467025268	6.9460579475161	6.88626420802638	6.67292922528367	-0.236603418222674	0.230541177752731	0.540058926814601
Merged-chr13-85553312-4	chr13	85553213	85553413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-263827.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	7.08068203817078	7.01718116832007	7.46111416724717	7.32613715351272	7.41579375822777	7.10283187066685	7.46864293504414	7.06458166237738	0.0606758480201659	0.771321891608753	0.910379161490028
Merged-chr3-96716020-3	chr3	96715921	96716121	+	632.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028925, intron 9 of 14)	intron (NM_028925, intron 9 of 14)	-7461.0	NM_030094	78373.0	Mm.423186	NM_030094	ENSMUSG00000028100	Nudt17	2410015C20Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 17	protein-coding	3.25853718494895	3.67414589555618	3.60618967743878	3.56374053890594	3.45571278085023	3.5584439077588	3.5912776781168	3.44226854474394	-0.0893720433519505	0.858991067317036	0.946576014812915
Merged-chr8-94782868-4	chr8	94782762	94782962	+	903.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009142)	TTS (NM_009142)	10682.0	NM_009142	20312.0	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	4.53287942118624	4.44848362066427	4.19188349655343	3.70369669700948	5.07732544195177	4.79385341634021	4.88083257810664	5.13665030177121	1.62240806666767	7.23230518740685e-05	0.00154424642365684
Merged-chr16-97962739-4	chr16	97962667	97962867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081684)	promoter-TSS (NM_001081684)	-145.0	NM_001320385	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	8.17704156929221	8.2066478661613	8.13582349847267	7.60739133277736	8.34610030265985	8.19011360380903	8.32235240876675	7.88529833150816	0.199255404224046	0.331009136028652	0.642196339222182
Merged-chr6-42310845-4	chr6	42310729	42310929	+	969.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013491, intron 18 of 22)	intron (NM_013491, intron 18 of 22)	13811.0	NM_001286584	76156.0	Mm.234314	NM_029528	ENSMUSG00000029861	Fam131b	6330503C03Rik|6530406I18Rik|AV277466	family with sequence similarity 131, member B	protein-coding	4.89604044626916	5.39482070979825	4.77815696285382	5.12075665599038	4.67687045240845	5.14513941457004	5.20195537467714	5.13392295486754	-0.0580243573638656	0.867914969054041	0.95052266524545
Merged-chr19-41913060-2	chr19	41912960	41913160	+	785.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_023418, intron 1 of 3)	intron (NM_023418, intron 1 of 3)	1189.0	NM_023418	18648.0	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	2.40991995059861	2.32331614419618	2.58854659013797	2.11863034319326	2.00887756530132	2.14899491456353	2.26878080466235	2.40892357109501	-0.9497824315586	0.251683272096029	0.562996971229518
Merged-chr8-115626600-4	chr8	115626485	115626685	+	874.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80309.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	4.4009445836824	3.94931375540327	4.40165550773385	4.15373837411682	3.88586778599851	4.18885208993459	3.8965283742832	4.06243436637993	-0.593834894502482	0.170065284861837	0.46307659016619
Merged-chr13-74390894-4	chr13	74390794	74390994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14328.0	NM_001081680	238722.0	Mm.461254	NM_001081680	ENSMUSG00000069184	Zfp72	Zfp74	zinc finger protein 72	protein-coding	6.19645615116136	6.20383143230809	6.47926982626388	6.56570404669352	6.54164333692379	6.70440294939719	6.47918819048111	6.70449523720075	0.325115686992815	0.149524029909144	0.431777928290641
Merged-chr13-58601456-4	chr13	58601349	58601549	+	916.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022317, intron 1 of 17)	intron (NM_022317, intron 1 of 17)	9428.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	4.43310062933215	4.86737794948305	4.47956152414725	4.20507962529758	4.67659513029518	4.78247410988912	4.90592424415997	4.86221144023964	0.641804288538428	0.0857602844630323	0.318947243209895
Merged-chr10-120883024-3	chr10	120882916	120883116	+	857.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 1 of 6)	intron (NM_177092, intron 1 of 6)	15955.0	NM_177092	320183.0	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	4.88203152625234	5.54370433460699	4.94645259266102	4.85052884182539	3.92678648466894	4.17668961812394	4.08667330960402	3.97961790113574	-2.47130112915028	1.25863522717007e-08	6.56490955223851e-07
Merged-chr1-138912464-3	chr1	138912357	138912557	+	929.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35507.0	NR_138576	75546.0	Mm.71176	NR_138576	ENSMUSG00000099808	1700019P21Rik	-	RIKEN cDNA 1700019P21 gene	ncRNA	3.98022984607966	4.32246607653351	4.12893211230882	4.49638593874167	3.98221074750894	3.93479834773395	4.32282992044088	3.978539572964	-0.509704170973096	0.243505618048353	0.554586324098925
Merged-chr7-16313648-1	chr7	16313548	16313748	+	1000.0	f0_c57.idr	exon (NM_133234, exon 3 of 4)	exon (NM_133234, exon 3 of 4)	4065.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	5.25006142772944	5.50408755860324	5.34990660664209	5.22525131345343	5.8211224815046	5.83255740630867	5.89644688751861	5.60396926183958	0.790718561288225	0.00313043653228989	0.033017714294414
Merged-chr8-69087981-3	chr8	69087869	69088069	+	749.5	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_007509)	promoter-TSS (NM_007509)	-767.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	4.53133038726295	4.12834791456706	4.18952254344074	4.23334238577829	3.89889212373599	3.96156239532909	3.88032000306575	3.94725272716152	-0.943880076796171	0.0266390325538208	0.154951352304357
Merged-chr14-75179460-4	chr14	75179356	75179556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	43031.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	5.9140562227023	6.4963899753242	6.38766262388956	6.02417547006344	6.25445698865999	6.33948073667302	6.35493104033628	6.3658472308018	0.159722801473036	0.515520987438885	0.777552728532641
Merged-chr19-46339840-4	chr19	46339739	46339939	+	981.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1179.0	NM_001164292	67116.0	Mm.218848	NM_024192	ENSMUSG00000036748	Cuedc2	3010002G01Rik	CUE domain containing 2	protein-coding	5.3208489705353	4.6473945296655	4.61908124300563	4.66917176611367	4.973115320742	5.03677696083345	4.9102034727745	5.06318336528479	0.315167089237369	0.375114925827009	0.678186534190177
Merged-chr14-105505188-3	chr14	105505086	105505286	+	861.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045921, intron 1 of 2)	intron (NR_045921, intron 1 of 2)	6398.0	NR_045921	74864.0	Mm.159344	NR_045921	ENSMUSG00000022116	4930449E01Rik	-	RIKEN cDNA 4930449E01 gene	ncRNA	3.62051244324678	4.03534280471752	3.90375059078182	3.86275193716503	4.37221700511416	4.21756851633893	3.88751188285304	3.68060715029076	0.565242448286589	0.233696844730199	0.543421601409349
Merged-chr9-100489087-3	chr9	100488976	100489176	+	965.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2603.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	4.26912208616842	4.62704597634597	4.22886568297795	4.21080611260748	3.55639652962017	3.84930816370062	3.82811052161071	3.59736955219917	-1.80592185998333	0.000125820054340491	0.00245965341374205
Merged-chr7-45705670-2	chr7	45705559	45705759	+	829.0	f0_balb.idr|f0_c57.idr	TTS (NM_009800)	TTS (NM_009800)	412.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	4.091810825255	4.01058552671052	3.8911437710905	4.12448041266124	4.16631803641779	4.1182605122845	4.24672960308309	4.04256397542989	0.275582910771461	0.500320579310737	0.768850577358824
Merged-chr13-97190573-4	chr13	97190473	97190673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010422, intron 3 of 13)	LSU-rRNA_Hsa|rRNA|rRNA	7784.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	6.02485280661044	5.99799605245417	5.81398745350702	6.01367245933609	6.08086548849362	6.15819937438735	5.75875580971043	6.68013627662163	0.375928838928173	0.176560677231462	0.471696597404882
Merged-chr8-61584845-4	chr8	61584753	61584953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	L2a|LINE|L2	6316.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	6.73904727405016	6.72196890599839	6.9564383923021	7.13852549131177	6.82652951665651	6.63901678578957	6.46381843464514	6.9760794019855	-0.236217118278324	0.296430551901398	0.608478404731474
Merged-chr13-52031620-4	chr13	52031463	52031663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65178.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	5.96703736655081	5.70736476745137	6.21586988410589	5.8094464618255	6.29649702689526	6.23192511911846	6.20247508080664	6.28416017111041	0.513425896363486	0.0338837507535787	0.181653347509903
Merged-chr1-184562457-4	chr1	184562358	184562558	+	970.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4767.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	5.26693588192213	5.63248624157315	4.74650039157361	5.21850813123738	4.97874444040352	4.92633855984319	4.80681661131668	4.9414132552089	-0.650491316042161	0.0608857140627803	0.2608028074037
Merged-chr10-95844046-4	chr10	95843954	95844154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-96609.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	5.40914473706898	5.10551961156463	5.25673422156215	5.71644609627202	5.85166452582929	5.26191137560279	5.32439266704638	5.46275089293697	0.173938874701431	0.593326455258762	0.822673791983725
Merged-chr4-132305439-4	chr4	132305377	132305577	+	945.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2121.0	NM_001081651	242681.0	Mm.331927	NM_001081651	ENSMUSG00000089687	Rab42	9530096D07Rik|Rab42-ps	RAB42, member RAS oncogene family	protein-coding	4.30600345218287	4.17496287832654	4.70243077988942	4.5736462101248	4.56102929901347	4.23237815575381	4.37658720436513	4.51704476408456	-0.0606295535931101	0.877548266978488	0.954199567096042
Merged-chr8-120124453-4	chr8	120124352	120124552	+	898.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	10300.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	4.72894206328562	4.52136152583435	4.65586118584516	4.82119000732288	4.3764581921557	4.27803054589968	4.7421425366784	4.65280129572348	-0.37558503452056	0.309688200738769	0.621848805021012
Merged-chr11-87019654-4	chr11	87019539	87019739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25877.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	6.32970264485504	5.99695453177482	6.18340220820361	6.36845572403188	6.38039565067437	6.00236317821588	5.96331576001053	6.03418195524882	-0.175418517216811	0.481887054962287	0.756878915335201
Merged-chr2-145832800-7	chr2	145832715	145832915	+	986.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	46699.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	5.69053152371962	5.44596059159579	5.48388600116856	5.13799329381079	5.56197588882455	5.57229204856663	5.63857753922157	5.66335091970355	0.303612689685742	0.287065409559032	0.59875252848275
Merged-chr13-51351013-4	chr13	51350929	51351129	+	838.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57589.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	4.65885774566836	4.27328970070189	4.86450640205988	4.68105076280837	4.29660724219819	4.67511691509593	4.43894187002049	4.41216206233855	-0.403648580513295	0.292457066672445	0.60479380959004
Merged-chr1-120072691-1	chr1	120072591	120072791	+	825.0	f1_balb.idr	intron (NM_019432, intron 1 of 1)	MIRc|SINE|MIR	1089.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	2.96627319606321	2.91325328074878	2.90702656185901	2.78340796373724	3.09562898650045	2.81495384582846	2.63078343182762	3.02194811248095	0.0880483939414366	0.889623327509158	0.95860823232862
Merged-chr13-81401965-4	chr13	81401873	81402073	+	838.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 77 of 89)	MTE2b|LTR|ERVL-MaLR	231171.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	4.55880385369387	4.62492478159037	4.68711262794756	5.25934516298605	4.64806713723886	4.64739852422607	5.28604860932541	4.64295957158357	0.00437609919007472	0.991429590942511	0.996745793587504
Merged-chr18-69593358-4	chr18	69593247	69593447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	247187.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	6.58943035342535	6.26312474817974	6.69747837874203	6.68735725637442	6.67933007219759	6.61557323089964	7.02714008731134	6.43370269653534	0.192264040539143	0.414363580929156	0.709044594374843
Merged-chr4-57955653-4	chr4	57955548	57955748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 1 of 4)	CpG	763.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	6.05409420009735	6.50464590620772	6.24421865510476	6.10204682206118	6.34042858299294	6.63392581983074	6.53550712669434	6.20013517614753	0.298124985943051	0.215636459209253	0.521854601185075
Merged-chr4-6369179-4	chr4	6369077	6369277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	3497.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	5.51981560013895	5.2673270896704	5.72310693995038	5.86534305953585	5.33957023925009	5.45685075009009	5.69418625663188	5.48916644337133	-0.225879939186627	0.445770004193139	0.731683687961799
Merged-chr19-11343294-4	chr19	11343185	11343385	+	955.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	-7139.0	NM_027836	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	5.61558894832043	5.10268443389114	5.56754922878435	5.37034129126426	5.48245249817561	5.11382320079973	4.86780064585002	5.7271831735841	-0.138531412936818	0.683663723892597	0.870394242877558
Merged-chr5-21383687-4	chr5	21383591	21383791	+	903.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	11018.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	4.42464374794482	3.66581494211102	4.07275115513476	4.55413804720682	4.16905308088057	4.43250862965324	4.28456134244053	4.07036574573413	0.0218675137731392	0.963085556402034	0.986806397465601
Merged-chr7-35137725-4	chr7	35137603	35137803	+	884.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	18410.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	4.56294098563768	4.03878715023616	3.96195869027114	4.30342511632504	3.98536361790392	4.14002796445186	4.3980493720489	4.20805648865222	-0.13261002010701	0.758099406841835	0.904926340425875
Merged-chr18-5680329-4	chr18	5680214	5680414	+	979.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360981, intron 2 of 8)	Lx9|LINE|L1	87667.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	5.12946139764088	5.37948988754583	5.25797253473236	5.37592964149828	4.97789109265798	4.96773539922944	5.37415147908163	5.34217459613884	-0.227358186756062	0.459642459741236	0.74208997902975
Merged-chr3-109340726-5	chr3	109340706	109340906	+	923.0285640000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_020505, exon 1 of 27)	5' UTR (NM_020505, exon 1 of 27)	123.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.667385028776	4.77116472352879	4.62551525208486	4.51459684822742	4.68767460668332	5.07118447748467	5.09674114983523	5.25739530857637	0.803747145621585	0.0194064762012759	0.125365635863933
Merged-chr9-86571882-4	chr9	86571751	86571951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145969)	promoter-TSS (NM_001145969)	-9.0	NM_028352	109785.0	Mm.390201	NM_028352	ENSMUSG00000056131	Pgm3	2810473H05Rik|Agm1|BB187688|C77933|PAGM|Pgm-3	phosphoglucomutase 3	protein-coding	8.3459212812407	8.23957618148494	8.03979516141918	8.31705946380861	8.41815883861871	8.51961777181206	8.78573201499431	8.40035854693291	0.373211234424143	0.028415260988514	0.16163748596671
Merged-chr17-34286984-8	chr17	34286883	34287083	+	916.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010378, intron 1 of 4)	intron (NM_010378, intron 1 of 4)	788.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	3.56266250048457	3.43195532216998	3.44438255933565	3.16652884455104	3.83109832830516	3.79322772467045	3.49161552899118	4.14331920950553	1.38465578237578	0.0064220127352069	0.057074846357759
Merged-chr5-135705528-4	chr5	135705445	135705645	+	962.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	B4A|SINE|B4	16400.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	4.38529863599429	4.30185397946892	5.15221592675761	5.48348626497032	4.64448205736074	4.6685923176903	4.83818772312707	5.20483799381406	-0.161840371036937	0.723520558510587	0.889624450832197
Merged-chr2-69789614-4	chr2	69789526	69789726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028521)	promoter-TSS (NM_028521)	-111.0	NM_028521	73373.0	Mm.9621	NM_028521	ENSMUSG00000027088	Phospho2	1700048E23Rik|AI661517|AU021728|AV006103|Phos2	phosphatase, orphan 2	protein-coding	8.02596758851058	7.81745806341698	7.91666570372943	8.03538911569987	8.05770046794339	8.04245394047828	8.24936590007106	7.83710377828256	0.130458495192993	0.445897981519123	0.731725012715843
Merged-chr8-41240471-2	chr8	41240386	41240586	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 1 of 37)	intron (NM_023662, intron 1 of 37)	727.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	4.46566243208514	4.15861495616706	3.76188983239389	3.81802497392637	4.65122113844638	4.23776202588486	4.40592473938567	4.67716384275761	1.05316707227451	0.0160444991414317	0.109864334672351
Merged-chr15-39943144-6	chr15	39943024	39943224	+	996.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172814, intron 1 of 6)	intron (NM_172814, intron 1 of 6)	870.0	NM_001347036	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	4.50363498612512	4.41845128612831	4.58309986182778	4.42717608236727	4.18641330007087	4.55037888219342	4.48358340845316	4.61763498361086	-0.046434743767061	0.901311946968808	0.963342914941175
Merged-chr18-67724578-4	chr18	67724391	67724591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001127177, exon 1 of 9)	exon (NM_001127177, exon 1 of 9)	130.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	7.73472850033446	7.89306457915036	8.19839258913752	7.68610650336855	8.03042065917667	8.23574139596366	7.94679552390494	8.19297097286231	0.280459581324775	0.133321900610335	0.406638366694222
Merged-chr4-128616020-4	chr4	128615891	128616091	+	876.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_205823, exon 1 of 1)	exon (NM_205823, exon 1 of 1)	2628.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	4.50336898951026	4.34967424928543	5.04781383041921	4.19836603231219	4.54360857280446	4.5934038671951	4.20328787718397	4.89850363826819	0.0556054417194361	0.897327732372226	0.961664794593593
Merged-chr11-22872485-2	chr11	22872382	22872582	+	552.0	f0_balb.idr|f1_balb.idr	Intergenic	RMER15|LTR|ERVL	-12146.0	NM_001169114	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	3.98008724272541	3.68830704599431	4.10345351015482	3.44158593201979	3.44760988301822	3.57478568059342	3.67709703098417	3.79347257028434	-0.583057589169474	0.259681408800321	0.571548020933767
Merged-chr13-34303611-4	chr13	34303506	34303706	+	817.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 2 of 10)	intron (NM_001033167, intron 2 of 10)	41576.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	3.69267347933775	4.1980339734007	4.03741077240068	4.69838785448762	4.0643646762488	3.93977697314786	4.36841652796802	4.22276145713061	-0.168962970848408	0.734011045168747	0.894723473099637
Merged-chr3-129725255-4	chr3	129725166	129725366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310737)	promoter-TSS (NM_001310737)	-180.0	NM_001329594	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	7.85631591908543	7.7127656949674	8.21554625285085	7.74761533931343	7.39424754117953	7.79536917287358	7.53571588172896	7.73019235608681	-0.360612781119584	0.0692920349032566	0.281525824509847
Merged-chr12-25100355-1	chr12	25100255	25100455	+	691.0	f0_balb.idr	Intergenic	Intergenic	-4263.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	3.83456575515798	3.49119490123466	4.15083911600215	3.64923841590711	3.90681010264271	3.79134390910443	4.00679941568041	3.93121916224969	0.335277664619046	0.479345204550925	0.755076401136965
Merged-chr2-127143518-4	chr2	127143446	127143646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163527)	promoter-TSS (NM_001163527)	-89.0	NM_001355634	73338.0	Mm.57559	NM_001163527	ENSMUSG00000074825	Itpripl1	1700041B20Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 1	protein-coding	5.79852587594657	5.50435680904698	5.40546025524205	5.8038215922757	5.28652780838812	5.10171055374726	5.22607739690862	5.18136099315751	-0.785375005620459	0.00706037725699024	0.0612493105149675
Merged-chr2-5034793-4	chr2	5034694	5034894	+	965.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 8 of 13)	intron (NM_001356487, intron 8 of 13)	-22003.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	4.4756252840529	4.41309757481837	4.76512548503493	4.70201799287338	4.74955387827057	4.82336976546892	5.03483442067149	4.83368897725605	0.536516502846576	0.121543527731559	0.386162719250847
Merged-chr5-137864203-4	chr5	137864105	137864305	+	803.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6156.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	4.10903549647323	3.81491521558046	3.89045940257556	3.39157058577152	3.96155350822872	3.85943728342445	3.91973546236673	3.29534739221481	-0.101837477549177	0.851769447925664	0.944100387750672
Merged-chr7-25385854-4	chr7	25385739	25385939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_073028)	TTS (NR_073028)	4273.0	NM_001039507	16890.0	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	5.87672904586736	5.35444887763697	5.71802313914044	5.46506940514484	5.58174195038167	5.65400273341203	5.86878780023247	5.61273431604773	0.127489794221604	0.64821717100227	0.852051670602031
Merged-chr2-104712252-4	chr2	104712137	104712337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177190)	promoter-TSS (NM_177190)	-75.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	5.16910784163747	5.38706925995089	5.86118952435956	5.22439203916225	5.00032735976585	5.17250486507071	5.0068865868221	5.09894401764918	-0.66758842959624	0.0404026017660144	0.203097469454445
Merged-chr8-106411753-3	chr8	106411638	106411838	+	767.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3601.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	3.29244318429063	3.40839601483345	3.53332794211778	3.95713912369794	3.74785210142278	3.53228151913478	3.40651941697716	3.63663454733396	-0.00264211258381995	0.996173315225921	0.998563054228531
Merged-chr15-95763118-4	chr15	95763020	95763220	+	873.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11529.0	NR_131148	629300.0	Mm.247258	NR_131148	ENSMUSG00000115699	Gm6961	EG629300	predicted gene 6961	ncRNA	4.50323248555175	4.23724091208685	4.20344860143944	4.14591147207788	4.4928095044212	4.51270554547473	4.32148725008611	4.29408457809245	0.342005796203422	0.373160191691873	0.676789871854101
Merged-chr14-54383478-4	chr14	54383360	54383560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	22619.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	6.72829300214177	6.96789816245219	7.38176527790793	7.49990432218863	6.65635647217401	6.61853853817331	6.79736842635302	6.72468244382824	-0.686640914641314	0.00382565344422527	0.0386798560378567
Merged-chr6-86570965-4	chr6	86570879	86571079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43578.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	5.74182112884201	6.10506223501092	5.76545905895876	5.23079891120188	5.03655983412594	5.58120801792047	5.22014463827045	5.13734884761948	-0.847468161457009	0.011787996131833	0.0887516158946205
Merged-chr5-20749655-4	chr5	20749547	20749747	+	989.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	132477.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	5.90010652498566	5.44053791248004	6.32613044254671	6.55306609071421	5.32841934107114	5.25040541706213	5.707474482695	5.4544206075972	-1.12666938494141	0.000780687816166839	0.0110189526208486
Merged-chr16-57423609-4	chr16	57423524	57423724	+	915.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	70347.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	4.93419465828761	4.7139821197778	4.49462151647289	4.90771803184114	4.97475243633692	5.00217454445672	5.12640158974945	4.583697131627	0.311938029984957	0.374587600272564	0.677891254741963
Merged-chr8-119112911-3	chr8	119112789	119112989	+	665.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019707, intron 7 of 13)	intron (NM_019707, intron 7 of 13)	-231649.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	3.01027950966192	2.95676591009671	2.95180808702718	3.14538805889934	2.92978635713533	2.71215644543298	3.05487968772379	2.82416191537455	-0.5890492322368	0.340939596711709	0.650069367398214
Merged-chr19-55655714-4	chr19	55655643	55655843	+	920.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	(CAGTG)n|Simple_repeat|Simple_repeat	46461.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	4.44161178672554	4.60205171577751	4.01187559550791	4.39586569606579	4.41033431060776	4.61265704865333	4.2949507030912	4.16912803023697	-0.00604490057484112	0.988085277350568	0.995370064932717
Merged-chr7-102507012-4	chr7	102506913	102507113	+	852.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12240.0	NM_146840	258837.0	Mm.377714	NM_146840	ENSMUSG00000044824	Olfr545	MOR42-1|S50	olfactory receptor 545	protein-coding	4.07925294836647	3.83121595910839	3.88536309570728	4.23463909413315	3.89691701267585	4.10879305381146	3.81686782336423	4.12160832502272	-0.115040753165974	0.795581356890719	0.920897975671128
Merged-chr13-95942059-4	chr13	95941950	95942150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR73|LTR|ERV1	-50128.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	5.74844498943434	5.92032576436114	5.87150300939461	6.09181404990638	5.79531447821878	5.73480559045435	5.90918006775948	6.1193159928345	-0.0534649198991055	0.834560373888485	0.936929006230221
Merged-chr11-75631367-2	chr11	75631267	75631467	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008916, intron 1 of 11)	intron (NM_008916, intron 1 of 11)	347.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	3.3640434819025	3.19270270708533	3.13305848267076	3.22090133784769	3.4435896103812	3.30569014788408	3.18370390586991	3.25226834785079	0.280925535220449	0.598482064632414	0.825985087029716
Merged-chr10-40529884-3	chr10	40529788	40529988	+	657.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-40474.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	3.76771359965216	3.73646077443097	3.61759931633834	3.28230592487136	3.6798327809302	3.49984489268773	3.65455275998357	3.61555741557882	0.046104731377673	0.927324029431856	0.973437269072031
Merged-chr9-106476756-2	chr9	106476701	106476901	+	793.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_145620)	promoter-TSS (NM_145620)	148.0	NM_001311150	235587.0	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	4.4019195983194	4.63292199697116	4.30858458438811	3.92634649922713	4.76684996699689	4.70590810478812	4.55092476529112	4.85306166793799	0.891483030534629	0.0241158607686974	0.144917083466029
Merged-chr1-180890730-3	chr1	180890620	180890820	+	817.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2388.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	3.51708873353541	3.90941097272838	3.92591602017169	3.91352468098115	3.76763305813779	3.43779732304025	3.77160736177049	3.3903040692569	-0.669031820227502	0.188884823611762	0.487687851483034
Merged-chr13-112002769-4	chr13	112002675	112002875	+	876.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134839.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	4.27774223837194	3.98052902198629	3.94412571809813	4.51405470960874	4.09917248998917	4.31710109552179	4.12769077476311	4.09566217970327	-0.149212461236637	0.731953752508853	0.893842682027583
Merged-chr4-35994190-4	chr4	35994075	35994275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 7 of 8)	MERVL_2A-int|LTR|ERVL	-148971.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	6.1115976330055	5.4007998338914	6.03098755032419	6.82374167725498	5.93811615253932	5.73094760958537	6.06133206826129	5.63467467488916	-0.55291946132142	0.113586456043065	0.372647969887966
Merged-chr9-22051972-4	chr9	22051898	22052098	+	753.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010487)	promoter-TSS (NM_010487)	25.0	NM_010487	15571.0	Mm.390167	NM_010487	ENSMUSG00000003410	Elavl3	2600009P04Rik|Huc|PLE21|mHuC	ELAV like RNA binding protein 3	protein-coding	3.64950696294003	3.46142442949919	3.31370084880266	3.4213995988896	3.41737327330603	3.60903276075482	3.36402927498273	3.83081395329652	0.329496493520834	0.519961303585619	0.780413411519922
Merged-chr4-139212308-4	chr4	139212195	139212395	+	928.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	MIRb|SINE|MIR	18184.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	2.84439774913217	3.08979038525188	3.25671253849326	3.06743703951144	3.42562737654467	3.4299258266754	3.35624763744167	3.6575710549644	1.45418102574954	0.00922486475096043	0.0745002500574178
Merged-chr13-105293439-4	chr13	105293349	105293549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027934)	promoter-TSS (NM_027934)	-435.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	5.76596514765018	5.75221274066348	6.24918961906995	5.56985417279796	5.70275365334057	5.56405762659934	5.56202998858534	4.97613515757149	-0.608770340380705	0.0583802825521169	0.253969571676881
Merged-chr10-81257996-4	chr10	81257828	81258028	+	842.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285853, intron 1 of 12)	intron (NM_001285853, intron 1 of 12)	629.0	NM_001285853	17179.0	Mm.2918	NM_010768	ENSMUSG00000004933	Matk	CHK|HYL|Ntk|p56ntk	megakaryocyte-associated tyrosine kinase	protein-coding	3.44701949598954	3.51699126752907	3.19255537374971	3.51015673060432	3.48838225064981	3.50266875276815	3.73872344421111	3.79789243089571	0.665004229421881	0.192023143193847	0.491538219433335
Merged-chr19-44373159-4	chr19	44373054	44373254	+	908.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34555.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	4.43350152600924	4.45634745055246	4.15553681314746	4.532962569083	4.5746363795137	4.22811590146115	4.56937472674969	4.43138769109595	0.118590719013185	0.757064746257989	0.904554066545557
Merged-chr1-156458780-1	chr1	156458680	156458880	+	629.0	f0_balb.idr	intron (NM_009230, intron 2 of 15)	intron (NM_009230, intron 2 of 15)	15548.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	3.09424393414101	2.98805883869932	3.20618198862279	3.28215149034754	2.78647022486179	3.14456326980044	2.89804824361015	3.03350652166657	-0.782837193751711	0.19553927837076	0.496372692409141
Merged-chr5-31940874-3	chr5	31940777	31940977	+	780.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 7 of 11)	intron (NM_144541, intron 7 of 11)	-195595.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	4.08020092529818	3.67144684749015	3.91638073471169	3.85235721745855	3.73213184544415	3.19533720771712	3.49166676566719	3.56162467906736	-1.13956197003597	0.0329695016689146	0.178204222356854
Merged-chr15-51951678-4	chr15	51951564	51951764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	40096.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	5.89928327915374	5.99777488737228	6.29678803700413	6.38877510095655	6.07320658748968	6.32025386151463	5.89445969652717	6.4115899002193	0.0180108017821648	0.94504011170077	0.980260935841461
Merged-chr13-110902961-3	chr13	110902871	110903071	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131193)	promoter-TSS (NR_131193)	-528.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	3.32152761055971	3.38735361912476	3.72179475226321	3.8086842416683	3.38621963799645	3.68216683783275	3.79941556376348	3.76772512410573	0.239195039445984	0.649638311906665	0.852817273809124
Merged-chr5-64896775-4	chr5	64896671	64896871	+	772.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35928.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	4.18063188294893	4.16323208182457	3.87860942992628	4.24783902850194	4.18339614699553	3.94168496686731	4.36752689008103	4.26546002978954	0.16511207571123	0.692898423265105	0.875178636291779
Merged-chr9-62812924-4	chr9	62812839	62813039	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1291.0	NM_010193	14155.0	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	5.39669488359077	5.42524137321685	5.10563947576417	5.29729747567804	4.90861548762909	4.90694095382323	4.78920810641667	5.03474687723566	-0.766485305894475	0.0132336677308982	0.0961869943242729
Merged-chr9-21546232-4	chr9	21546138	21546338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021531)	promoter-TSS (NM_021531)	-656.0	NM_021531	59035.0	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	7.80790313174857	7.90373149737609	7.6631143905404	7.96350372373092	7.63238313681296	7.90762595412874	8.06896451851469	7.6664602137564	-0.024164785632109	0.89613235446368	0.961005888727067
Merged-chr6-34481394-4	chr6	34481293	34481493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007563, intron 1 of 2)	intron (NM_007563, intron 1 of 2)	5037.0	NM_007563	12183.0	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding	5.93978823645102	5.59837362361457	5.577533843301	6.08814264943483	5.39574741421433	5.6383245954615	5.84607330329534	5.84956444797362	-0.241721175480817	0.40371421482597	0.700922982752502
Merged-chr11-60417169-4	chr11	60417086	60417286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145427)	promoter-TSS (NM_145427)	41.0	NM_025757	66771.0	Mm.29950	NM_025757	ENSMUSG00000018415	Gid4	4933439F18Rik	GID complex subunit 4, VID24 homolog	protein-coding	8.42778397436168	8.53109185569472	7.85715911123925	7.8887703407944	8.48830424534815	8.53518553492453	7.97437438029422	8.15175346943599	0.12699479835566	0.572625605183487	0.811251899831922
Merged-chr3-95662956-4	chr3	95662837	95663037	+	861.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008562, exon 3 of 3)	3' UTR (NM_008562, exon 3 of 3)	4216.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	3.74267268599715	3.72022877755146	3.52897336361261	3.46170275324382	3.86907881460879	3.15825401491839	3.62577473318468	4.00635595569256	0.275329668093449	0.617841391158336	0.835731112257238
Merged-chr14-105288732-4	chr14	105288641	105288841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029561, intron 2 of 7)	intron (NM_029561, intron 2 of 7)	30068.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	8.2100664615948	8.3985787926549	8.37173380151976	8.55005279673212	8.53472617257972	8.40727339566757	8.57552185991951	8.32254699301369	0.0894927217597792	0.580271286564458	0.815718435955212
Merged-chr6-128839660-4	chr6	128839555	128839755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13340.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	5.95068851976235	6.36331398977201	5.46568243741066	5.99495973920093	6.03521700536283	6.21343583509976	6.06866890936319	5.8050895499074	0.0768956240361802	0.786527712620637	0.916992990510127
Merged-chr1-176224038-4	chr1	176223943	176224143	+	971.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357846, intron 1 of 8)	intron (NM_001357846, intron 1 of 8)	-10101.0	NM_001195816	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	5.02167741815544	5.24569382631733	4.82543439376269	5.84563709548074	5.2516999607917	5.42978450140256	4.96160183457625	5.19003411112141	-0.184840395788588	0.621480416105673	0.83784148145736
Merged-chr7-101419735-3	chr7	101419642	101419842	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1949.0	NM_001008548	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	3.08644380334402	3.41300614747667	3.21012475203378	2.89956956260105	3.17843499908968	3.38155523448759	3.19800590998752	3.26588744227502	0.370368810155385	0.515972498517468	0.777920536992964
Merged-chr9-22649777-3	chr9	22649679	22649879	+	714.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360259, intron 15 of 22)	intron (NM_001360259, intron 15 of 22)	174064.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	3.70001331681686	3.81538952315312	3.59043750425495	3.81207548500475	3.52714438423048	3.81873912786239	3.68571573790538	3.84745325046428	-0.0632319263542861	0.892722326357887	0.959851546084039
Merged-chr1-88290104-4	chr1	88290026	88290226	+	777.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-12547.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	3.95680608644398	3.67143262627237	3.60896599624517	3.56603871377032	3.87002779322674	3.54023814491472	4.02175871563268	3.76804222297372	0.342631491493735	0.473771164570043	0.751365889135324
Merged-chr1-15799114-4	chr1	15799014	15799214	+	991.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6532.0	NM_009352	21749.0	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding	5.48141856041913	5.56810865392049	5.40469800027358	5.50033969370171	4.85767531295489	4.93949107700667	4.9745001027665	4.66287997164853	-1.19028631176597	9.71120338759246e-05	0.00198174812478625
Merged-chr12-59216888-4	chr12	59216796	59216996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033156, intron 1 of 3)	intron (NM_001033156, intron 1 of 3)	2587.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	4.82765660095731	4.84563623777549	5.17065284585486	4.43166126845748	5.08942038896218	5.04348823572577	5.23099588610437	5.25384178416848	0.652421097518499	0.0591630798265824	0.256293044857213
Merged-chr5-138441506-4	chr5	138441441	138441641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028130)	promoter-TSS (NM_028130)	65.0	NM_028130	72154.0	Mm.20263	NM_028130	ENSMUSG00000036898	Zfp157	2610020C11Rik|A630094N24Rik|AI327407|Roma|mszf12|mszf23-1	zinc finger protein 157	protein-coding	5.17005303428015	5.42741509056055	5.06895303655649	5.26070080104148	5.12235993542455	5.43841063548135	5.20887589473523	5.23105390862624	0.00668751246649836	0.982076606386091	0.993573193675204
Merged-chr11-11558878-4	chr11	11558778	11558978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68960.0	NM_001305143	102631730.0	Mm.159430	NM_001305143	ENSMUSG00000062511	4930512M02Rik	-	RIKEN cDNA 4930512M02 gene	protein-coding	6.45913662686039	6.34959935545175	6.39025973867038	6.57329285903923	6.50319487723454	6.6525132645608	6.3754422248117	6.52197971772425	0.0869793482147594	0.684927271011147	0.870968079022822
Merged-chr6-33929802-6	chr6	33929720	33929920	+	810.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 17 of 17)	intron (NM_009148, intron 17 of 17)	-99628.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	3.70094075097552	4.14382401533538	3.95452708955024	3.49349455994006	3.57324080939291	3.76409642232797	4.06611762127952	3.7540136189656	-0.121148641667517	0.809466984846604	0.926453192815623
Merged-chr3-96055640-3	chr3	96055523	96055723	+	853.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013841, intron 2 of 14)	intron (NM_013841, intron 2 of 14)	2832.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	3.49051193883886	3.5466987648599	3.64717324089752	3.35437970600781	3.61253480668155	3.60645607922274	3.47744922508471	3.3117797746808	0.0212962623925384	0.966284905059736	0.988064836334535
Merged-chr13-38528003-4	chr13	38527924	38528124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289599)	promoter-TSS (NM_001289599)	-110.0	NM_001289599	105245.0	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding	6.81836258184927	6.48478827096027	7.06647188609296	6.82267137860304	6.52570066491673	6.52310054739792	7.0308186107607	6.6702667804154	-0.155534372674532	0.508717944894509	0.773675372068676
Merged-chr5-64506370-3	chr5	64506281	64506481	+	869.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29373.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	3.97452686859233	3.89678785754715	3.59178967319062	3.54035244358196	4.01582586024024	3.9989837301274	4.17284716900263	4.06412804316685	0.874124162567321	0.0510408563771215	0.234480257910619
Merged-chr2-119478047-4	chr2	119478034	119478234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026574)	promoter-TSS (NM_026574)	-505.0	NM_026574	68142.0	Mm.330496	NM_026574	ENSMUSG00000034154	Ino80	2310079N15Rik|4632409L19Rik|Inoc1	INO80 complex subunit	protein-coding	6.65350374422168	7.02877663851169	6.57804397693097	6.04927391225371	6.66084123813812	6.72243358809572	6.07318356429668	6.52503296933474	-0.139031565397671	0.627412520412751	0.841151302397407
Merged-chr12-55572352-4	chr12	55572250	55572450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7145.0	NM_001277340	79459.0	Mm.392781	NM_001277340	ENSMUSG00000063129	Aldoart2	4933425L11Rik|Aldo1-ps1|Aldoa-ps1	aldolase 1 A, retrogene 2	protein-coding	5.85702022168133	6.13137367678539	6.08152649006361	6.31002428254072	6.22388215696521	6.009514895521	5.80440693716204	5.9477767383109	-0.164842736520808	0.518466920882758	0.77953711493731
Merged-chr8-126582733-4	chr8	126582622	126582822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10714.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.35146830705397	5.52706532929311	5.58350885916264	5.41976960295556	5.52702996630083	5.95104690803917	5.63165486666176	5.52565781114715	0.32888620444787	0.231788499372342	0.541324023781873
Merged-chr13-42820143-4	chr13	42820061	42820261	+	893.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005740, intron 1 of 12)	intron (NM_001005740, intron 1 of 12)	-46086.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	4.48791997874751	4.33152281236263	4.44871669286284	4.39742761641813	4.35297833386006	4.53656616512378	4.34533588936488	4.1254372725532	-0.160718456565333	0.671565378783888	0.864854120541665
Merged-chr3-36496966-4	chr3	36496871	36497071	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9838.0	NR_040590	329623.0	Mm.490730	NR_040590	ENSMUSG00000085320	Gm11548	E330009D11	predicted gene 11548	ncRNA	4.6614873128956	4.82160653102797	4.74220152636133	4.723890817755	4.9161986067015	4.98957625883525	4.899472185122	4.81455120885528	0.343549453253332	0.285665899910817	0.597403017136955
Merged-chr9-35040322-2	chr9	35040222	35040422	+	888.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76406.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	2.51545881242182	2.61281870929792	2.51574132780834	2.04038476397184	2.53734977139843	2.76247786484713	2.82000930566216	2.77348672992042	1.45926527981111	0.0809497366941288	0.308688454000521
Merged-chr8-20550224-4	chr8	20550132	20550332	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-64695.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	7.44721941769832	7.56735521527932	7.05259687245066	6.64422365287254	7.29943381417142	7.05595004164261	7.71791737397014	7.03498398102493	0.119376454872052	0.656472857640179	0.856670300375292
Merged-chr4-135272155-5	chr4	135272024	135272224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	636.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	4.88145015468004	5.25930992546159	5.09095553757052	4.79839822423429	5.07078949691355	4.90034342012449	4.82114757479541	5.2937745697704	0.0502824354917486	0.880783581707809	0.955239057189135
Merged-chr2-30955050-2	chr2	30954950	30955150	+	827.083313	f1_balb.idr|f1_c57bl6.idr	intron (NM_133673, intron 2 of 4)	intron (NM_133673, intron 2 of 4)	2049.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	3.27116478533549	3.38959827668044	3.32847964791415	3.04894308491369	3.35472155882521	3.19462117905094	3.3154956891548	3.38103916486229	0.221405596453518	0.68114309548476	0.869152852058187
Merged-chr4-130810314-4	chr4	130810216	130810416	+	971.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	17779.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	5.1613222937595	5.4745843590163	5.16218648808165	5.77203242974961	5.43879063950684	5.07261009153239	5.69475060247382	5.74235345012489	0.12925502693001	0.697213318949722	0.877654024750592
Merged-chr3-127787322-4	chr3	127787272	127787472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-2500.0	NM_145133	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	6.54576837003993	6.39972873326404	6.7044680242266	6.55533738151392	6.13819453156015	6.29097100659379	6.01624164568636	5.79338812553658	-0.723383499347771	0.00211436508874934	0.024407783433683
Merged-chr4-150882787-4	chr4	150882689	150882889	+	928.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	27132.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	4.59377550947392	4.91727537802768	4.41548293730488	4.45679328413196	4.84138476326067	4.68482618828525	5.02180605382984	4.67249409936601	0.440795867141161	0.221102497398294	0.529181394159823
Merged-chr1-138506836-3	chr1	138506740	138506940	+	910.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 7 of 9)	intron (NM_021605, intron 7 of 9)	112917.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	4.04691871358686	4.35113997244231	3.77864303876764	4.33629026877577	3.97794472226406	3.83785605030715	4.40205243042845	3.99563428896543	-0.227382042430616	0.622933460607786	0.838815376326174
Merged-chr11-23753340-3	chr11	23753242	23753442	+	867.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 3 of 9)	intron (NM_009044, intron 3 of 9)	17628.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	3.92808522827588	3.50793925175619	3.69559932645691	3.77791270609345	3.44094106093461	3.86553079536277	3.39905965056941	3.53026123301579	-0.532998349750762	0.29104442561414	0.603331333534854
Merged-chr5-54019699-4	chr5	54019585	54019785	+	983.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	21162.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	4.88582875823529	5.08100526235074	5.02994845629326	4.89961581187349	4.7939222291918	5.13519345478517	5.52110658226627	4.84497018267804	0.246306804201547	0.47439797784378	0.75165589989079
Merged-chr7-67645334-4	chr7	67645229	67645429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175124)	promoter-TSS (NM_175124)	-93.0	NR_028143	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	8.60283100088368	8.74514206063394	8.45793779735593	8.63192076924267	8.54054389264541	8.75883409134461	8.64907917497445	8.6349426309452	0.0370889779254243	0.806924562262886	0.925565567068015
Merged-chr11-86756944-4	chr11	86756775	86756975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	692.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	4.84399616611858	4.74372421960498	5.45940150418787	4.98058184121587	5.26211984454514	5.28242544162247	5.20939259840789	5.64501505175526	0.607136553138969	0.0697154797413241	0.282527304900036
Merged-chr11-120949016-4	chr11	120948918	120949118	+	896.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038654)	promoter-TSS (NM_001038654)	-49.0	NM_001038653	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	4.35767836053555	4.20309511135445	4.05708573958139	4.19157102285524	3.84746188992991	3.90938464723459	4.17628455344592	4.10227745722949	-0.512434892375287	0.222750583612159	0.53089448487962
Merged-chr2-167771764-4	chr2	167771666	167771866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80589.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	5.74458798767873	5.63409833061696	6.36367248553965	6.26550285067991	5.80349668393323	5.43438955155918	5.88387305674189	5.99690601405668	-0.397988421521428	0.185110989488227	0.482903247967107
Merged-chr17-31853854-4	chr17	31853753	31853953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010831, intron 3 of 13)	intron (NM_010831, intron 3 of 13)	1951.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	6.27948714098839	5.54574296309444	5.71879608988601	5.95698781768004	6.02924507610277	5.70014506774284	6.01018672319338	5.86293917489462	0.0136265773518872	0.961085678984989	0.98607960708679
Merged-chr2-78054113-4	chr2	78054013	78054213	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_108098, intron 1 of 6)	MER34A|LTR|ERV1	2936.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	5.40286925129477	5.56482688785703	5.56031525067965	5.55252462203983	4.84423549672972	5.26758218724484	4.91656541178451	5.18907849197829	-0.865616256160149	0.00391482405299606	0.0394079000520728
Merged-chr8-105851962-4	chr8	105851810	105852010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177150)	promoter-TSS (NM_177150)	98.0	NM_177150	320394.0	Mm.334775	NM_177150	ENSMUSG00000036672	Cenpt	G630055P03Rik	centromere protein T	protein-coding	4.7842534477481	4.9548755060241	4.70211630692538	4.8012078048789	5.25230240329371	5.2116258623366	5.10905246714514	5.00257447748524	0.655349014429664	0.0354763429937805	0.186966499570929
Merged-chr18-82910941-3	chr18	82910844	82911044	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183033)	promoter-TSS (NM_183033)	65.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	5.08994598244935	5.23829198161203	4.76239589913557	4.80072110354603	4.76929129137915	4.85694549771953	5.29804382895563	5.29428920212475	0.174022635296361	0.618746255178574	0.836062966920086
Merged-chr2-32437240-2	chr2	32437140	32437340	+	856.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146118, intron 1 of 10)	L1MEc|LINE|L1	-6089.0	NM_001164358	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	3.02028061914003	2.90333743105727	2.96547369958554	2.85065938747312	2.47736783528351	2.82404510593788	2.77445421962144	2.71603903559	-1.15131817781513	0.0847252924503738	0.316759958323353
Merged-chr15-89147231-4	chr15	89147153	89147353	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011161, intron 1 of 11)	intron (NM_011161, intron 1 of 11)	2353.0	NM_011161	19094.0	Mm.91969	NM_011161	ENSMUSG00000053137	Mapk11	P38b|Prkm11|Sapk2|Sapk2b|p38-2|p38beta|p38beta2	mitogen-activated protein kinase 11	protein-coding	4.23875122770353	4.06803362401916	4.14188035753587	4.03980920987614	4.60908517782241	4.66381163241207	4.39437795903704	4.41199799337709	0.985146099186842	0.00904978226735859	0.0734079147587826
Merged-chr11-82866672-4	chr11	82866566	82866766	+	947.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164569, intron 1 of 7)	intron (NM_001164569, intron 1 of 7)	4078.0	NM_001164570	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	5.15971773492139	4.94666773432825	4.69337026212923	4.90317943026169	4.94115975815777	4.34203503578607	4.89127264016551	4.56343327311118	-0.439874901853049	0.232810456758579	0.542464407511367
Merged-chr15-100039117-2	chr15	100039017	100039217	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	CpG	453.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	4.00303111149919	4.15651321879234	4.49684412323117	4.11460762708258	4.4519583941224	4.12793392758896	4.27644827136859	4.49384685978287	0.369330099988881	0.362538455377895	0.667696251173235
Merged-chr12-69986474-4	chr12	69986400	69986600	+	884.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022028, intron 1 of 4)	CpG	502.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	3.78669618411724	4.47135565514939	4.1037240165172	4.05145330341227	4.13223579242608	4.02355983440353	4.25877476633728	4.00412114634705	-0.0448724150706984	0.918783055459942	0.970137918006816
Merged-chr7-141022293-4	chr7	141022205	141022405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-5413.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	6.92155213416079	6.80307618973104	6.75749431849949	6.84610215250181	6.70535297275387	6.91953325153989	6.86174476517627	7.09772335364005	0.0879304871679865	0.661595663160387	0.85945541323944
Merged-chr13-5802400-4	chr13	5802264	5802464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55728.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	7.33064152484139	7.17673415185863	6.71758247591407	6.89947099619308	6.51710788430737	6.65375138638392	6.09883939883562	6.10239069332498	-0.972468884655277	0.00011560829717903	0.00228961685723601
Merged-chr3-109352525-3	chr3	109352413	109352613	+	966.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 1 of 26)	MIRc|SINE|MIR	11830.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	3.99450963093863	4.19504063240508	4.28781836662549	3.97510561299478	3.83387492554777	3.60070828292517	3.88111852602468	3.73324581192428	-0.96699466831402	0.0340617684357355	0.182182342612505
Merged-chr17-36958585-4	chr17	36958503	36958703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029602)	promoter-TSS (NM_029602)	11.0	NM_029602	76416.0	Mm.26684	NM_029602	ENSMUSG00000036214	Znrd1as	1700022C21Rik|AI746295|Znrd1-as	zinc ribbon domain containing 1, antisense	protein-coding	8.12134338646351	8.34961370824187	7.93160481540884	8.08663997410838	8.36954209346436	8.24203023110051	8.35537498050309	8.05901450140363	0.169840147093707	0.326009425250743	0.637535712949136
Merged-chr14-22759799-4	chr14	22759681	22759881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-216983.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	6.09491818674891	5.69387019188963	5.82358855142945	6.22094961511845	5.36170409514489	5.68445622947209	5.77041362641743	5.58925508253677	-0.635206993092581	0.0232333507666225	0.141223456380651
Merged-chr14-50926724-4	chr14	50926637	50926837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310505)	TTS (NM_001310505)	1788.0	NM_009687	11792.0	Mm.203	NM_009687	ENSMUSG00000035960	Apex1	APE|Apex|HAP1|Ref-1	apurinic/apyrimidinic endonuclease 1	protein-coding	5.7345055053191	5.67526320950439	5.46596899287809	5.9600210186059	5.70595517299706	5.34507845826279	5.82152944028365	5.75546813636756	-0.10702758106352	0.704256057994949	0.881194811597198
Merged-chr19-46002454-4	chr19	46002356	46002556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152221, intron 1 of 1)	ORR1C2|LTR|ERVL-MaLR	-1022.0	NM_176785	20170.0	Mm.101110	NM_176785	ENSMUSG00000074811	Hps6	5330434M19Rik|BLOC2|ru	HPS6, biogenesis of lysosomal organelles complex 2 subunit 3	protein-coding	6.53060251609923	5.68601160604493	5.47827457360981	5.57481990629724	5.77132302624788	6.18731668789244	5.93969368884055	5.75647909499473	0.0604357940646954	0.854611340061068	0.945249640443465
Merged-chr11-51821002-4	chr11	51820886	51821086	+	844.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 11 of 12)	intron (NM_001357588, intron 11 of 12)	36495.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	3.94014822863778	3.78128850442953	3.69261461548511	3.95268183302155	4.00614926444494	3.81042514917593	3.50530271291967	3.63479642497577	-0.256581791901134	0.593190145678067	0.822553370861762
Merged-chr8-122430083-1	chr8	122429983	122430183	+	1000.0	f0_c57.idr	intron (NM_001301284, intron 1 of 4)	intron (NM_001301284, intron 1 of 4)	2857.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	6.93090040985141	6.76348002303561	6.91962879243878	6.57599408740034	6.7285339645573	6.51863182925839	6.73894233794222	6.65043085479342	-0.177996594578399	0.400804657430249	0.698500960047687
Merged-chr5-118155384-4	chr5	118155177	118155377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172721, exon 1 of 11)	exon (NM_172721, exon 1 of 11)	181.0	NM_172721	231672.0	Mm.221769	NM_172721	ENSMUSG00000032867	Fbxw8	4930438M06Rik|FBW6|FBW8|FBXO29|Fbx29	F-box and WD-40 domain protein 8	protein-coding	4.2769269685539	4.37911891539178	4.78916028494206	4.24048568672637	4.46141729839022	4.54534417226618	4.39520580825612	4.61292417247745	0.176493443073011	0.647305984179461	0.85162457299009
Merged-chr9-106429874-1	chr9	106429774	106429974	+	998.0	f0_balb.idr	5' UTR (NM_001324534, exon 1 of 3)	5' UTR (NM_001324534, exon 1 of 3)	463.0	NM_009082	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	4.11427394257789	4.07027971315124	4.067339532734	4.00967654882489	4.38636877505987	4.03526700747406	4.00134906434274	4.28632413140112	0.350157673535517	0.393484117553146	0.692576805225404
Merged-chr9-107579561-4	chr9	107579443	107579643	+	884.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008317, exon 4 of 4)	3' UTR (NM_008317, exon 4 of 4)	-1126.0	NM_019750	56441.0	Mm.10305	NM_019750	ENSMUSG00000079334	Nat6	AI225910|Fus2	N-acetyltransferase 6	protein-coding	4.28720668271953	4.31694238311306	4.05490140713987	3.95064888560326	4.28766893699058	4.6878103998133	3.8190889559939	4.05251274660782	0.235601673563511	0.604607783218745	0.828509474255204
Merged-chr12-102705267-4	chr12	102705191	102705391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172584)	promoter-TSS (NM_172584)	-422.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	6.51558476000107	6.57108204469289	6.69880207162478	6.28944280086426	6.38389736856583	6.69198192683673	6.41656221752454	6.40991951820522	-0.0544000316407073	0.809798198346313	0.926654509851571
Merged-chr2-21909698-3	chr2	21909620	21909820	+	745.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-317783.0	NM_148413	667663.0	Mm.330033	NM_148413	ENSMUSG00000025716	Myo3a	9030416P08Rik	myosin IIIA	protein-coding	3.38226403819236	3.20754700613592	3.27687879847653	3.34389340478997	3.15718665534083	3.07412585813644	3.02543521842518	3.27510101053778	-0.647000796884935	0.242353251852216	0.553081694951968
Merged-chr13-89904773-4	chr13	89904704	89904904	+	766.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028012, intron 7 of 7)	intron (NM_028012, intron 7 of 7)	-162292.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	4.07056121869075	4.11103393795325	4.20845102735269	4.34792773668743	4.2740740174896	4.19481677129357	3.79023832110061	4.01959572005645	-0.277672373952712	0.517553986438316	0.77894111729988
Merged-chr7-24531626-7	chr7	24531512	24531712	+	956.761902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153134, exon 2 of 3)	exon (NM_153134, exon 2 of 3)	964.0	NM_153134	210146.0	Mm.41108	NM_153134	ENSMUSG00000041037	Irgq	AF322649|FKSG27|Irgq1	immunity-related GTPase family, Q	protein-coding	4.30075086475254	4.69461382421577	4.86762852351553	3.82803281877817	4.46321443033199	4.73119357283768	4.1335271704947	4.3901779881163	-0.0737612867884446	0.874317730249293	0.952841261958902
Merged-chr1-152556844-4	chr1	152556739	152556939	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 5 of 17)	intron (NM_016846, intron 5 of 17)	68378.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.26049380686873	4.87831436867361	4.83187060257798	5.64446625996801	4.40343059065852	4.9702380370249	5.05583624625131	4.90479304092349	-0.704619692539778	0.0707297735608139	0.285137279446257
Merged-chr14-48131779-4	chr14	48131663	48131863	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033602, intron 1 of 5)	intron (NM_033602, intron 1 of 5)	10894.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	5.47276700411438	5.61486766368639	5.78917218054122	5.91213644467111	4.26418125836711	4.77923723134866	4.66410036997517	4.63538351000532	-2.22745705216481	6.72998803643923e-11	5.28734898946698e-09
Merged-chr11-70795700-4	chr11	70795601	70795801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 3 of 4)	MTB|LTR|ERVL-MaLR	16860.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	6.12663647948103	6.53735149505735	6.16707962711973	5.45979963894845	6.00033474050321	6.15592432604343	6.03515370676002	5.99740104301031	-0.110660796865348	0.714527234703521	0.885865917211766
Merged-chr13-105291995-4	chr13	105291886	105292086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 1 of 7)	MMVL30-int|LTR|ERV1	1028.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	6.02595113324139	5.61426977122734	6.2773753505758	6.44766635233029	6.1000606065909	5.94555722475889	5.68554823589112	6.00122639851958	-0.303288596431808	0.292174060485299	0.604571570431788
Merged-chr1-21101382-3	chr1	21101299	21101499	+	847.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-22174.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	4.29755323307932	4.08044791897908	3.79501753179307	4.20965711338075	4.20883315478522	3.79459033244372	3.98540640215204	3.79307372711104	-0.391174008408402	0.393093842010824	0.692283607899856
Merged-chr13-64107824-3	chr13	64107717	64107917	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001321, intron 7 of 11)	intron (NM_001001321, intron 7 of 11)	-18616.0	NM_008291	15487.0	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	3.48829712813808	3.37127786323256	3.48872897349315	3.2087384679138	4.82582453293505	4.06912472973802	4.7122756098362	4.87491248518274	3.52927553091347	3.62318531501817e-13	4.24168926871181e-11
Merged-chr16-17686785-3	chr16	17686706	17686906	+	898.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358404, intron 2 of 16)	intron (NM_001358404, intron 2 of 16)	36094.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	3.56291470291094	3.47081298163735	3.79722128473882	3.86397824690884	3.14172559191045	3.10479393379866	3.38650071833514	3.33789962673466	-1.58958623082704	0.00429636608089555	0.0424005704643103
Merged-chr11-51578594-3	chr11	51578503	51578703	+	667.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153393, intron 27 of 28)	intron (NM_153393, intron 27 of 28)	-6154.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	2.99716599426527	3.62844587519014	3.42310924110252	2.69499209546792	3.90060017585238	4.05444398245073	3.73066856943946	3.53841648742168	1.85370126224709	0.00466984884958393	0.0451869455226393
Merged-chr2-30474277-4	chr2	30474179	30474379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030244)	promoter-TSS (NM_030244)	-80.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	6.19379910894601	6.21697275144768	6.03281284422064	5.81035364407606	6.37125935193229	6.16488868274421	6.06487833925721	5.81744685981911	0.106585026970786	0.682170618150149	0.869682098720609
Merged-chr10-19594569-5	chr10	19594424	19594624	+	863.176208	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010511, intron 1 of 6)	intron (NM_010511, intron 1 of 6)	2575.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	3.78404196124476	3.66969121287973	3.53550992141985	3.63304971731333	3.62720612510181	3.47221918195671	3.28425109637419	3.53360435469611	-0.53776882459814	0.283126895687837	0.595263611222688
Merged-chr17-50390335-4	chr17	50390249	50390449	+	965.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-96729.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	5.04124784734847	4.81344769041678	4.46882744371451	5.01053521369319	5.35606746485129	5.39721378272198	5.11214766660973	4.65645800611814	0.586191658816901	0.109944576010113	0.366215108014911
Merged-chr8-33660748-4	chr8	33660635	33660835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	7497.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	6.13435930036739	5.74806847545508	6.43169273726913	6.62959927506511	7.11770853091666	7.43875602829817	7.59455982863537	7.20691777807486	1.47814467002483	2.9150541702321e-08	1.40862621033911e-06
Merged-chr19-3083602-2	chr19	3083502	3083702	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	114101.0	NR_045304	70011.0	Mm.393871	NR_045304	ENSMUSG00000100969	1700030N03Rik	1700087C08Rik	RIKEN cDNA 1700030N03 gene	ncRNA	3.80865986918508	4.18535717029488	3.18445268521766	3.23182839612466	3.36025298311434	3.50350050788825	3.49102591710733	3.44483028162696	-0.700808518642418	0.2422587975397	0.552967513791635
Merged-chr8-34158405-4	chr8	34158310	34158510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026432, intron 1 of 5)	intron (NM_026432, intron 1 of 5)	3847.0	NM_026432	67887.0	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	6.86266496319428	6.7759693004597	7.08539541078055	6.97947895116914	6.72028293318249	6.66863666508611	6.7315008176297	6.92453509472326	-0.237034327825374	0.238437339110062	0.548836356743826
Merged-chr3-157578719-2	chr3	157578619	157578819	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359745, intron 1 of 3)	MTEb|LTR|ERVL-MaLR	11827.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	3.40172905960249	3.23182396167675	3.45946460267586	3.22530793110705	3.53199834268314	3.73602794730114	3.60190943777009	3.51234506395564	0.919912863480668	0.0642010712534747	0.269269226960761
Merged-chr4-149763530-4	chr4	149763430	149763630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027460, intron 1 of 6)	URR1B|DNA|hAT-Charlie	10737.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	5.14653876892667	5.0983251493822	5.51310324249372	5.41500401904824	5.41219482057046	5.547648839971	5.56176781518577	5.56102764969858	0.360919807489325	0.208231678608108	0.512446688569828
Merged-chr2-27028048-4	chr2	27027931	27028131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172659)	promoter-TSS (NM_172659)	-33.0	NM_001177627	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	7.75595363697638	8.2244929957442	7.92379292834534	7.54561229303384	8.06588866899199	7.94294847779109	8.08749169982076	7.70245506816889	0.102117598390775	0.620368087951078	0.837190371300352
Merged-chr2-169756480-3	chr2	169756351	169756551	+	738.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	122805.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	3.11609772882382	3.16870411792783	3.11644032122007	2.58619507950618	5.02499345090324	4.32697368539898	4.2473894220913	4.14423109184536	5.64114222876659	1.84863093684918e-16	3.74882340324752e-14
Merged-chr7-28379246-5	chr7	28379130	28379330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011756)	promoter-TSS (NM_011756)	-2.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	8.40101521193754	8.83321594774061	8.56307581999011	8.30032923754857	8.45445596124306	8.77361094078698	8.84879834906736	8.3421366711868	0.103001533558232	0.59738354890473	0.825256992211092
Merged-chr3-31342754-4	chr3	31342656	31342856	+	986.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32437.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	5.70865963345763	5.46051542681072	5.46470928995179	5.47202907292522	5.26509269354628	5.2314297546189	5.2647285499005	5.01152178485881	-0.581949353223459	0.0432636629523572	0.211641891107403
Merged-chr15-38371868-4	chr15	38371779	38371979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71168.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	7.51424098831534	7.74187442933768	7.70145005065517	7.41436782665941	7.39259277205881	7.34945548235314	7.43218033568974	7.3240755597968	-0.288444985907617	0.110259957417941	0.366691625977182
Merged-chr4-133774961-7	chr4	133774978	133775178	+	999.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21467.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	5.94161242941291	5.52123978223183	5.10191187793448	5.33744184534344	5.87602428002719	5.72553704855065	5.43944167895484	5.46301443291976	0.239270798726546	0.449473435971429	0.734617277148016
Merged-chr7-7136755-4	chr7	7136669	7136869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029584)	promoter-TSS (NM_029584)	-14.0	NM_029584	76373.0	Mm.159732	NM_029584	ENSMUSG00000063535	Zfp773	2810409K11Rik	zinc finger protein 773	protein-coding	6.83318894599488	6.70972551123137	6.77749115498713	7.24822007780578	6.75733951846932	6.78409989195322	7.1160624512746	6.82953885828176	-0.0695193062124586	0.760018099659377	0.905851390428209
Merged-chr11-113648358-4	chr11	113648224	113648424	+	950.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1205.0	NM_013581	16834.0	Mm.261620	NM_013581	ENSMUSG00000018661	Cog1	6030445I15|Ldlb|mKIAA1381	component of oligomeric golgi complex 1	protein-coding	4.45799449422812	4.40229519795527	4.19806686553438	4.30718771172148	4.42922918479484	4.41824762541923	4.13177688249609	4.2883260458627	-0.0390538323364151	0.919138670308734	0.970285021467879
Merged-chr4-19712479-3	chr4	19712394	19712594	+	945.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-3490.0	NR_074090	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	4.07749549160817	3.78716603367584	3.89655726360117	4.27868541988756	3.6113952201682	3.68216725891307	3.67107766808834	3.89424694919361	-0.929929525709186	0.0491831015936092	0.229320318900269
Merged-chr15-100153247-4	chr15	100153183	100153383	+	957.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 5 of 37)	intron (NM_001159361, intron 5 of 37)	-1113.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	4.67708933500514	4.32853975512969	4.6392894406112	5.05196689567249	4.61117533486351	4.64759833229508	4.61769884655438	4.51325113336846	-0.264407795996479	0.490278745714385	0.762174753407996
Merged-chr9-44094913-4	chr9	44094808	44095008	+	895.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016808, exon 13 of 13)	3' UTR (NM_016808, exon 13 of 13)	-6862.0	NM_001190314	259172.0	Mm.227110	NM_147126	ENSMUSG00000034739	Mfrp	rd6	membrane frizzled-related protein	protein-coding	4.76915708753997	4.67479122620239	4.50638136233694	4.86656947553933	4.7281407356153	3.9998742656412	4.4002281396589	4.41709383450096	-0.643693274614214	0.112197133810139	0.370214573860373
Merged-chr1-183936453-2	chr1	183936342	183936542	+	742.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97556.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	3.04202346828952	2.94269465473265	3.31768162514301	2.85262469831578	3.27835945869279	2.95183328112107	3.14722753000782	2.97812250487054	0.239582499363381	0.690715046401583	0.874049428217715
Merged-chr17-23726888-3	chr17	23726785	23726985	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023058, intron 1 of 7)	intron (NM_023058, intron 1 of 7)	549.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	4.42646673780766	4.3754166552884	4.42714651890545	4.22247900854117	5.39719084031556	5.07088131994046	5.36330870624543	5.33841428548597	1.93741244016489	2.3358717960594e-09	1.40071624744492e-07
Merged-chr4-56114097-4	chr4	56114011	56114211	+	997.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-581636.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	5.2594786390156	4.93381003935919	5.34331330847356	5.4244496110459	4.42908850550106	4.95907139685695	5.14584593644304	4.8957414271658	-0.748823160861351	0.0344158639058889	0.183442172903794
Merged-chr13-49162865-3	chr13	49162775	49162975	+	816.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14547.0	NM_001290311	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	3.81671554451922	3.77639559170976	3.7229941754493	3.71266813506209	3.48576794469906	3.62631345078688	3.49733300566417	3.2555064063755	-0.921435603088963	0.0639534664946472	0.268674012372218
Merged-chr18-23495909-1	chr18	23495809	23496009	+	711.5	f0_balb.idr	intron (NM_001361217, intron 2 of 20)	intron (NM_001361217, intron 2 of 20)	-1573.0	NM_001361215	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	2.97447570420848	2.65482449802249	2.97496098991907	2.97622634622647	2.32838069748992	2.35506432567646	2.33120872780379	2.41439441502426	-3.86766855513239	0.000145243545378966	0.00277985757368362
Merged-chr18-78140476-2	chr18	78140376	78140576	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171011, intron 1 of 8)	intron (NM_001171011, intron 1 of 8)	1643.0	NM_001171011	108052.0	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	3.26774891215383	3.10575323804966	3.20891731129051	3.26806256701002	3.16835389953163	3.43772939099433	3.31195944217671	3.47847739572089	0.483814051667401	0.364535354357443	0.669279814395716
Merged-chr9-102834888-4	chr9	102834805	102835005	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013649)	promoter-TSS (NM_013649)	-15.0	NM_013649	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	5.82400557027406	5.68791846682032	5.58117387799487	5.82369042242682	5.59899866653724	5.45798194053541	5.75047523836165	5.24100058375152	-0.351991827191533	0.202172257590924	0.50461441050349
Merged-chr13-60840377-4	chr13	60840304	60840504	+	950.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24012.0	NM_178098	214639.0	Mm.19839	NM_178098	ENSMUSG00000050345	4930486L24Rik	AW545031	RIKEN cDNA 4930486L24 gene	protein-coding	4.59053440169935	3.92430106310625	4.48121700626502	4.45914135075044	4.1959193553708	3.9739549852492	4.42147532308207	4.35773243476258	-0.333668934763577	0.436566209153174	0.725186775580137
Merged-chr11-6415773-4	chr11	6415681	6415881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008907)	promoter-TSS (NM_008907)	-89.0	NM_008907	268373.0	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	7.97929645282259	8.51758785421368	7.93733460998878	7.75589458736204	8.33880467145572	8.57136352433354	8.41377567268125	7.95382963066959	0.330639374879797	0.135442002184167	0.409681551651658
Merged-chr6-115367459-4	chr6	115367372	115367572	+	941.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 1 of 7)	intron (NM_001308354, intron 1 of 7)	5123.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	4.08126885224288	3.60170465600704	3.67297389878666	4.22303737669991	3.85758843739174	3.79198097830504	4.14718739482167	4.07933413595424	0.109767890207144	0.821826353473951	0.931907696450946
Merged-chr10-111108877-4	chr10	111108735	111108935	+	946.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55967.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	4.41251166674895	4.30652470193592	4.57529279536369	4.40983555568207	4.49967936975438	4.4980411273175	4.51559880138971	4.45286934316501	0.152592281786166	0.672557574570558	0.865267714888623
Merged-chr15-95808074-4	chr15	95807967	95808167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	17224.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	6.58083923169787	6.63284184495574	7.01829283065711	6.77159177419138	6.78989282853593	6.62186630799625	6.48175080406286	6.68651717963637	-0.150557867271454	0.486373013008966	0.760100660715873
Merged-chr12-69157636-4	chr12	69157526	69157726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009093)	TTS (NM_009093)	1560.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	5.80033024408811	5.57403697198476	6.33627237260212	6.15018114149523	5.74982581099063	5.70657320363028	5.97537221898808	5.93725281383867	-0.252308352499895	0.372053139495165	0.676019053865482
Merged-chr6-134862990-4	chr6	134862876	134863076	+	835.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	24809.0	NR_074084	14760.0	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	4.02351734795723	3.58644785756292	3.87945945435606	3.7753078339365	3.8446481257792	3.893951475528	4.13462884923305	4.15129267389968	0.529235793945707	0.237264290016961	0.54744640494391
Merged-chr15-57773384-2	chr15	57773284	57773484	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 2 of 3)	intron (NM_199449, intron 2 of 3)	78717.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	3.06310186149296	2.84447512872694	2.86964924900701	2.5602257614075	3.1348281086251	3.17677002170166	3.21831300735373	3.23050193124001	1.52898585887486	0.0128862158982563	0.0944816606326724
Merged-chr8-104571185-4	chr8	104571073	104571273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20295.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	5.66671425201362	5.21027252215893	5.73628701263617	5.33613808428973	5.36126991710696	5.46202988628167	5.35133609887593	5.21728089003447	-0.24951361064583	0.402456885489946	0.699923735640365
Merged-chr10-78105665-4	chr10	78105570	78105770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	36302.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	6.67291954723424	6.30209753371802	6.19030716458134	6.37424026176288	6.82209582620114	6.32578625063765	6.64002893372106	6.38053099573103	0.25545504597473	0.287569759995891	0.599400507972342
Merged-chr2-155363624-2	chr2	155363521	155363721	+	725.083374	f0_balb.idr|f1_c57bl6.idr	Intergenic	(TTC)n|Simple_repeat|Simple_repeat	-6197.0	NM_001004721	228812.0	Mm.5434	NM_001004721	ENSMUSG00000038383	Pigu	5430426F17Rik|BC028278|Cdc91l1	phosphatidylinositol glycan anchor biosynthesis, class U	protein-coding	3.84153850508219	3.41167111744292	3.697197963558	3.72909339207716	3.47504186966825	3.86708773961788	3.73135532337258	3.41076997272796	-0.155959974968583	0.756597061285146	0.904386007179465
Merged-chr19-6663585-3	chr19	6663489	6663689	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120519.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	3.74253016823483	3.59252548163803	3.22695752567392	3.4359472352224	3.70697492844614	3.70993648664597	3.67910671472267	3.47974353829069	0.44464618621898	0.376310289507407	0.679125531727079
Merged-chr7-80208942-3	chr7	80208881	80209081	+	975.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	10540.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	4.02133618618623	4.15657445264177	4.1123677400385	4.42385698974635	4.10238785424467	3.55926250155012	3.74919518726116	3.70308474312318	-1.06094996735067	0.0284886556584954	0.161951443264599
Merged-chr19-10698513-3	chr19	10698412	10698612	+	773.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	intron (NM_001361958, intron 1 of 4)	-2256.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	3.41295153407851	3.82008334707016	3.15911421021594	3.60570196206521	3.33407189130787	3.40509746509067	3.61073290318446	3.46812119677872	-0.238716869023519	0.661236452659173	0.859279027710725
Merged-chr16-16574676-4	chr16	16574560	16574760	+	981.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	-14441.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	4.86270733144404	4.81936114135036	4.55895056937011	4.79243690349981	4.89438403949603	4.69123722252844	4.35611730601739	4.71723288975449	-0.162551809799994	0.649913739448353	0.853005791049459
Merged-chr7-45873352-5	chr7	45873279	45873479	+	862.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133950, intron 1 of 4)	intron (NM_133950, intron 1 of 4)	539.0	NM_133950	68137.0	Mm.298433	NM_133950	ENSMUSG00000002778	Kdelr1	8030486F04Rik|AW215843|Erd2.1	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1	protein-coding	3.95580943143561	4.01185020805107	4.05425451929514	3.7579442138629	3.96640971200996	4.13004093873259	4.03660815844918	4.30661769241223	0.467860261785657	0.271119915049355	0.582921787758886
Merged-chr7-45481541-3	chr7	45481439	45481639	+	741.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027903, intron 4 of 6)	intron (NM_027903, intron 4 of 6)	-4723.0	NM_001290996	56734.0	Mm.439742	NM_008807	ENSMUSG00000023467	Tulp2	Pdet	tubby-like protein 2	protein-coding	3.65877449017797	3.79048707751067	3.54324914001155	3.47622499149459	4.04216545422311	3.77812654789446	4.06191165062564	3.60062634183039	0.813826579625519	0.0860443701534628	0.319619675563789
Merged-chr18-38428447-2	chr18	38428347	38428547	+	946.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	9540.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	2.83580874994831	2.89206911020448	2.95357528882248	2.74179712620723	2.60078557278063	2.74247229208905	2.88511729954384	2.77188869583616	-0.489683021477582	0.441233699659637	0.728396857622944
Merged-chr13-91387980-3	chr13	91387882	91388082	+	859.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045161, exon 1 of 3)	non-coding (NR_045161, exon 1 of 3)	103.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	2.90023016212512	3.54404631071026	2.82732501913961	3.35666839230624	2.84220555455554	3.21050060557076	3.20404706845544	3.21499114785011	-0.259388441254588	0.696301169479901	0.877172308963588
Merged-chr9-119981820-8	chr9	119981692	119981892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153287, intron 1 of 4)	intron (NM_153287, intron 1 of 4)	1231.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	4.6316690848671	4.71757695452168	4.55153487786581	4.4818474260991	4.73426391969664	4.80434503604226	4.40048743369389	4.66793899910942	0.15443011946444	0.66280647070371	0.860240669860217
Merged-chr9-106437876-4	chr9	106437765	106437965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025371, intron 1 of 14)	MIRb|SINE|MIR	371.0	NM_001276442	109652.0	Mm.7165	NM_025371	ENSMUSG00000023262	Acy1	1110014J22Rik|Acy-1	aminoacylase 1	protein-coding	5.89553918833469	5.94008151166915	5.68371152796779	5.86449657785456	5.8153066495274	5.80689133351255	5.68031339452124	5.22049044472318	-0.318013761663578	0.249825140078529	0.560914571501897
Merged-chr7-16313041-6	chr7	16312924	16313124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133234, intron 2 of 3)	intron (NM_133234, intron 2 of 3)	3441.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	5.40771080189216	5.92134144478228	5.88830604186473	5.40231671850415	5.83802557868469	5.9229597747241	5.64216167798614	6.14341668659629	0.37408814508884	0.194537312061124	0.494939721660797
Merged-chr13-3610612-2	chr13	3610512	3610712	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360838, intron 1 of 19)	CpG	496.0	NM_134063	105203.0	Mm.221609	NM_134063	ENSMUSG00000033799	Fam208b	AI645998|Pap20|mKIAA2006	family with sequence similarity 208, member B	protein-coding	4.24048935971878	4.52228452463656	4.19009191633339	4.35214707004925	4.76133119109673	4.7224351884293	4.49063748207225	4.5872426677856	0.698602340133425	0.0572000431402555	0.250673677544652
Merged-chr11-76457074-3	chr11	76456978	76457178	+	870.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 9 of 21)	intron (NM_001346670, intron 9 of 21)	11387.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	3.9139160149644	3.96576289889576	3.72478393877698	3.48847104951517	3.96261361975434	3.55602880679284	3.42837665165527	3.43846619737208	-0.464564807907296	0.3820494432073	0.684226111802756
Merged-chr7-25755097-8	chr7	25755004	25755204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360789)	promoter-TSS (NM_001360789)	-345.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	7.44285630344482	7.46992460562525	7.6719392828335	7.05005423299852	7.4603240053698	7.75755468006739	7.4450059059949	7.38999375135229	0.137602197624944	0.510690954420809	0.77491465272589
Merged-chr14-61680944-2	chr14	61680844	61681044	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	1429.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	6.96475437776391	7.35694027758736	6.86035202064607	6.43492984424665	7.02408330624951	7.27432543855398	6.53350920649104	6.93547024488169	0.0393852637124874	0.883232582040218	0.956033847067461
Merged-chr2-163951924-4	chr2	163951807	163952007	+	930.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33224.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	4.49330938511831	4.72960730256363	5.01579686401753	4.84809944297568	4.78209188270825	4.75842663016355	4.82968005795913	4.5799605864438	-0.0970806408916951	0.780013454163698	0.914273965875713
Merged-chr18-54860856-2	chr18	54860756	54860956	+	710.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	129324.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	4.30022065943346	3.64668052890061	3.68628869617984	3.42198472966409	3.73960714723692	3.96808044682917	3.72605400917939	3.79208349719943	0.0282024539166752	0.956399213476606	0.984662776561642
Merged-chr15-31225078-4	chr15	31225017	31225217	+	974.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146057, intron 1 of 3)	intron (NM_146057, intron 1 of 3)	732.0	NM_146057	223453.0	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	4.62519816685185	4.39193882279359	4.84758820045822	4.75145179373384	4.84808791013256	4.63038075492477	4.52210348432523	4.8443051379746	0.119907300254122	0.737579206164991	0.896392006995728
Merged-chr4-63745302-4	chr4	63745215	63745415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177371)	promoter-TSS (NM_177371)	-202.0	NM_177371	326623.0	Mm.208152	NM_177371	ENSMUSG00000050395	Tnfsf15	Tl1|Tl1a|Tnlg1b|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding	6.37137855347641	6.50990380878275	6.30105959126126	6.14409473096895	6.41787426721395	6.38162983144709	6.0053925464948	6.05429493853226	-0.143124544612796	0.556222066489449	0.801846753708994
Merged-chr1-88456874-3	chr1	88456761	88456961	+	858.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1A|LTR|ERVL-MaLR	49851.0	NM_029269	75396.0	Mm.173058	NM_029269	ENSMUSG00000026295	Spp2	0610038O04Rik|pp-24|spp24	secreted phosphoprotein 2	protein-coding	4.04001529323226	3.53734693824302	3.30856943700043	3.78117911207294	3.62238848290659	3.62000005463583	3.75983285554932	3.82181009178718	0.030724038737347	0.952232949706266	0.983110341498473
Merged-chr6-49107332-4	chr6	49107226	49107426	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023670, intron 8 of 14)	intron (NM_023670, intron 8 of 14)	33531.0	NM_029353	75593.0	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	5.14440680650028	5.40311368436936	5.35575327938417	5.25760426830664	5.17822213766599	4.81415030939104	5.24367501938017	5.10865961491826	-0.35326764341623	0.247061644494758	0.558168726560377
Merged-chr11-110967354-3	chr11	110967198	110967398	+	867.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252207)	promoter-TSS (NM_001252207)	-735.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	3.02342023330098	3.2963883306295	3.18521355655972	3.05400448551	2.68746650260757	2.80171747462467	2.76283384072387	2.90138566494614	-1.71758636017212	0.00841675521490529	0.0695814424438727
Merged-chr13-23542697-3	chr13	23542565	23542765	+	784.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178197)	TTS (NM_178197)	779.0	NM_178197	319182.0	Mm.352273	NM_178197	ENSMUSG00000114456	Hist1h2bh	H2b-221	histone cluster 1, H2bh	protein-coding	3.87081156936415	3.72055956060364	3.87137466397201	3.55289965451271	3.82613759210569	3.82085700994902	4.45197827742578	4.74678659201643	1.35954277413461	0.00595100851025975	0.0539463620417446
Merged-chr10-82901622-4	chr10	82901528	82901728	+	961.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35002.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	4.64282529725002	4.51896281379313	4.72504513790241	4.39633435045494	4.93584410319447	5.11422703410262	5.23666078929124	4.76076989399286	0.949927957525634	0.00544987083074636	0.0506286029576736
Merged-chr3-109129920-4	chr3	109129859	109130059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172685, intron 1 of 9)	Lx8|LINE|L1	6810.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	6.38542008872636	6.57814259124147	6.87760468343035	6.96765634180283	6.45585894959756	6.58265802810684	6.54419152354017	6.68114067411857	-0.247168747014588	0.283222870404093	0.59534411429271
Merged-chr3-90612819-3	chr3	90612729	90612929	+	718.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011313)	promoter-TSS (NM_011313)	-65.0	NM_011313	20200.0	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	3.17804550916878	3.13240083845243	3.17842892246917	2.8141413858901	3.38933794074639	3.59449058193521	3.60832353188215	3.75701008454057	1.92273148731146	0.000479615939084637	0.00747178440098607
Merged-chr6-129398481-6	chr6	129398394	129398594	+	922.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204253, intron 1 of 3)	RLTR21|LTR|ERVK	1197.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	3.40247838759903	3.79349241457877	3.46534774654155	3.58626788830021	3.52919177856558	3.51890008219525	3.62213458401765	4.15410231408593	0.484642060176543	0.351608984597281	0.658910409408162
Merged-chr7-46831447-4	chr7	46831368	46831568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14336.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	6.29476921332919	5.97944007989121	6.00784093936083	6.25419007459765	6.20767611617917	6.5763257038006	6.38556793389714	6.36282745350245	0.351256112084396	0.135143655197715	0.409283505651115
Merged-chr12-3346768-2	chr12	3346668	3346868	+	673.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18364.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	3.07619511788149	2.80002599309144	2.89154780510732	2.50176450991463	3.14965264793617	3.24726879100762	2.94530494214238	3.01613429349819	1.16277708051586	0.0720188357201506	0.288368670891709
Merged-chr9-96637367-4	chr9	96637275	96637475	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5872.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	5.06299190745714	5.11585810845186	5.927796431056	5.71218565441521	5.37638477207203	5.16785435392289	5.39430123261613	5.3297215714137	-0.339007248247643	0.315188603413833	0.627038475150038
Merged-chr9-16363910-3	chr9	16363798	16363998	+	780.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	14333.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	3.31302999660294	3.19574807372459	3.46906245394854	3.51122424228871	3.15849738160588	3.03891074953817	3.18684121159345	3.25536611824362	-0.835943311016522	0.132704599567594	0.405729165096937
Merged-chr9-58549089-4	chr9	58548988	58549188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8148.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	6.14199719829713	6.96668994293465	6.16298978130187	5.86766121980196	5.87267000036706	6.25816835501956	5.82136331646741	5.71458369850037	-0.651616225135438	0.0424393174763239	0.209137924304019
Merged-chr12-51938142-4	chr12	51938045	51938245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177171, exon 13 of 36)	exon (NM_177171, exon 13 of 36)	33176.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	7.10508769409304	7.19203972344834	7.3843358038094	7.66081066081513	7.01159915930561	6.75897408775198	7.40365268109826	7.0771611503373	-0.380533262254887	0.0950631083292575	0.337363363801577
Merged-chr12-24651868-4	chr12	24651756	24651956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178357, intron 1 of 3)	CpG	485.0	NM_178357	194655.0	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	8.37635578855332	8.54220419231802	8.3513723539318	8.36293856394619	8.09457241127834	8.13853228495449	8.2070861636949	7.95555229440218	-0.392859844442301	0.0122452214404864	0.0912195308123895
Merged-chr2-163858705-3	chr2	163858608	163858808	+	759.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001030292, exon 2 of 2)	exon (NM_001030292, exon 2 of 2)	4958.0	NM_001030292	241769.0	Mm.295337	NM_001030292	ENSMUSG00000035238	Kcnk15	KCNK11|KCNK14|KT3.3|TASK5	potassium channel, subfamily K, member 15	protein-coding	3.45642754843298	3.13329905638823	2.84100130800838	3.40481956963698	3.32862418019586	3.29575290590908	3.23193128811966	3.29886602685057	0.190693426691576	0.749190898724402	0.901219204917164
Merged-chr10-127622282-1	chr10	127622182	127622382	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-1134.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	5.56472683293059	5.73275964343451	6.057312032356	5.87501078848851	5.62020651396941	5.71418181510919	5.77071243199326	5.90959022469931	-0.115216681882443	0.662516750442434	0.860094838034252
Merged-chr11-115670736-3	chr11	115670641	115670841	+	612.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	28793.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	2.93070326411434	3.13512510871806	2.72335463184446	3.12473950561843	2.788059626023	3.10283252382296	3.04188612816339	3.16326240663142	0.132843226033312	0.832655705331023	0.936016052839699
Merged-chr14-7976346-4	chr14	7976250	7976450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007870, intron 5 of 7)	intron (NM_007870, intron 5 of 7)	17832.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	6.79213924518038	6.72872557477556	6.7648501279175	6.83332420705455	6.88231762199181	6.59735267063231	6.70144448584255	7.04236410038842	0.0542717659074053	0.791775980650161	0.919290448094425
Merged-chr7-101537766-4	chr7	101537652	101537852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18050.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	5.64831705130844	5.649656211579	5.18263942928898	5.41631957290381	5.76963957522297	5.58317932541111	5.15754644450923	5.4619616995444	0.0614282018978976	0.839575277437045	0.938950496537544
Merged-chr4-117126796-2	chr4	117126733	117126933	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175030)	promoter-TSS (NM_175030)	20.0	NM_175030	242646.0	Mm.358914	NM_175030	ENSMUSG00000047671	Tctex1d4	4833401D15Rik	Tctex1 domain containing 4	protein-coding	3.37428443114619	3.23817880455878	3.09798647047184	2.81410418350091	3.19209362314748	3.07845064910506	3.02458427978484	3.26924812035934	0.026564050019789	0.964601673558924	0.987450131194999
Merged-chr7-144942363-5	chr7	144942219	144942419	+	830.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2394.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	4.40789350610239	4.0214726537714	4.52533120947438	4.26146135848154	4.27221397818297	4.31317390537942	4.16860899390421	4.5223166367014	0.0332126905980117	0.933963492376695	0.976211101991878
Merged-chr2-25272444-4	chr2	25272342	25272542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023464)	promoter-TSS (NM_023464)	-24.0	NM_023464	68475.0	Mm.21444	NM_023464	ENSMUSG00000026966	Ssna1	1110003H09Rik|1190004J23Rik|AA934184|N14|NA14	SS nuclear autoantigen 1	protein-coding	7.46337378760228	7.35831526397123	7.08895556481376	7.0955059035105	7.73755841921056	7.41925349773284	7.23842300520714	7.4687208885018	0.309195684028651	0.129669168332315	0.400804313562872
Merged-chr13-9776062-4	chr13	9775954	9776154	+	941.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10733.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	4.38403307756874	4.46978488718683	4.18442116186467	4.60874948096694	4.70426497710683	4.56121083639196	4.57700881090289	5.02418786274515	0.639663621762557	0.0923402803636629	0.332386853881497
Merged-chr5-124476587-4	chr5	124476472	124476672	+	779.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	intron (NM_030259, intron 1 of 3)	1663.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	3.5119562688923	3.23074760465679	3.4556665655396	3.51708385661193	3.55279472393305	3.51101032425339	3.79108031121997	3.71504476409587	0.668263026721705	0.179290541352445	0.475558645945455
Merged-chr10-20952585-4	chr10	20952486	20952686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026203)	promoter-TSS (NM_026203)	39.0	NM_001358561	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	8.44020201957813	8.43191886053487	8.28389947423797	8.24095287582804	8.50390239205625	8.71293068033421	8.56013245346499	8.45633879791451	0.266981561724581	0.0851220876465136	0.317585966903826
Merged-chr3-75956283-4	chr3	75956181	75956381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175193, exon 1 of 15)	exon (NM_175193, exon 1 of 15)	668.0	NM_175193	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	6.69250700693277	6.3073612587417	6.55921179507195	6.7346918829918	6.48877120329455	6.04307865074475	6.55669692987034	6.45617719427176	-0.267370394705736	0.258681031181646	0.570489393947544
Merged-chr8-24419492-4	chr8	24419367	24419567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19479.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	6.7596872043955	6.74962695525615	6.68583844624768	6.71218286100378	6.68145892451606	6.99423494718721	6.91468229002571	7.11996643509626	0.284831328604459	0.163469102430124	0.453167225138784
Merged-chr2-101763234-4	chr2	101763146	101763346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 3 of 8)	intron (NM_001355625, intron 3 of 8)	34461.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	7.93823840463934	7.73888392791172	8.24824709880175	8.0719321834221	7.77642641684049	7.59489220595893	7.9890451310021	7.94814912698277	-0.228143282830519	0.228167032877863	0.537042466625225
Merged-chr16-92783818-1	chr16	92783718	92783918	+	886.6666869999999	f0_balb.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	42256.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	3.49736177501876	3.6240284488037	3.79023775890393	4.20003566457168	3.03658026622138	2.99968975496311	3.03887044197231	3.32088241763972	-2.74258910555233	2.48494477732949e-05	0.000615434531334502
Merged-chr17-35738030-4	chr17	35737928	35738128	+	954.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33429.0	NM_007584	12305.0	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	4.74088166434676	5.1286015234654	4.69941485483303	4.81982890923341	5.17022428420643	4.95964239471943	5.44994193501257	4.81904154935356	0.514938127703344	0.133356631924807	0.406663040937973
Merged-chr2-174171280-4	chr2	174171180	174171380	+	935.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040530, intron 1 of 3)	Lx8|LINE|L1	12638.0	NR_040530	100038374.0	Mm.127249	NR_040530	ENSMUSG00000074555	Gm10714	-	predicted gene 10714	ncRNA	4.4781602994706	4.91747459797429	4.89701165937521	4.88186641392339	5.22924750162884	4.99773172583814	5.06987126593652	4.742339482931	0.42961102082737	0.208827512519194	0.513211114649854
Merged-chr19-40999087-4	chr19	40998966	40999166	+	938.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4531.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	5.42576866888886	4.53571579207304	4.92629900463876	5.27983829618529	4.5974381350248	4.61561721900047	4.5974835919036	4.6156983973376	-0.993826907855192	0.00871567027694753	0.0714715085994065
Merged-chr12-3744232-3	chr12	3744153	3744353	+	664.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-62727.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	3.33865270211482	3.64501496749481	3.44954985667722	3.53969165661394	3.23379034244778	3.26389029043333	3.38238300660176	3.15216374455188	-0.87463809442171	0.101111595132901	0.349031145973074
Merged-chr5-71593956-1	chr5	71593856	71594056	+	744.0	f0_balb.idr	intron (NM_001359050, intron 2 of 2)	intron (NM_001359050, intron 2 of 2)	-45751.0	NM_030052	78174.0	Mm.60690	NM_030052	ENSMUSG00000049387	Cox7b2	4930503B16Rik	cytochrome c oxidase subunit VIIb2	protein-coding	3.83861627710618	3.64084103649265	3.45381751573369	3.83909232884035	3.25808018773978	3.69421753621269	3.95612531211575	3.97201729256738	0.123706937007176	0.816511394937814	0.929372165400724
Merged-chr9-7346107-4	chr9	7346097	7346297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001320077, intron 1 of 10)	intron (NM_001320077, intron 1 of 10)	-1177.0	NM_001320076	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	4.56599689437569	4.69339621396454	5.00741943722558	4.82157984886527	4.43544373550054	4.20802253897091	4.37386235862186	4.52257189869371	-0.868438253966245	0.0194187100829552	0.125426893375197
Merged-chr4-106529942-4	chr4	106529841	106530041	+	973.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31097.0	NM_053272	74754.0	Mm.133370	NM_053272	ENSMUSG00000034926	Dhcr24	2310076D10Rik|5830417J06Rik|mKIAA0018	24-dehydrocholesterol reductase	protein-coding	4.722317629873	4.70313162957976	4.68576579513137	4.69150179242439	4.59869927440683	4.61159995462341	4.50415393644784	4.68269504805837	-0.21591217351242	0.526072883131177	0.783529786428865
Merged-chr8-13673438-4	chr8	13673320	13673520	+	999.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	4167.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	4.65704739834217	4.6237348892704	4.65779579316915	4.95365999852018	4.56743577889715	4.37632282765926	4.78205187937094	4.73048249490329	-0.263291525130645	0.466152227168701	0.74629927630325
Merged-chr11-61498916-3	chr11	61498836	61499036	+	929.822205	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-4670.0	NM_001291034	23939.0	Mm.38172	NM_011841	ENSMUSG00000001034	Mapk7	BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7|b2b2346Clo	mitogen-activated protein kinase 7	protein-coding	4.13064064443079	3.78650580133141	3.46968806473937	3.39744285437909	4.08010334783097	4.2142545408448	4.30990677635098	4.08457345130517	1.25461485439371	0.00939631084573239	0.0755277469794267
Merged-chr19-36818951-3	chr19	36818843	36819043	+	942.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15289.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	4.02906067221491	4.02577742887667	4.20543248037989	4.36459215722464	3.71773735871944	3.63607538803287	3.69733914942597	4.24298500309186	-0.889340922737461	0.060870244053949	0.260800764552822
Merged-chr14-49172589-4	chr14	49172498	49172698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027492, intron 1 of 4)	CpG	352.0	NM_027492	70646.0	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding	5.71177890928785	5.42067240871347	6.04156875904168	5.33160687150928	5.42839309577318	5.44400986451311	5.53483808749998	5.22824789580633	-0.391639038631314	0.206311839619279	0.510234892194874
Merged-chr7-75456293-3	chr7	75456164	75456364	+	869.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 1 of 36)	CpG	730.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	3.37590279585909	3.46146860849454	3.24883187676203	3.57789614766856	3.35382002870229	3.49088258467229	3.7276089131237	3.83000871744543	0.577079545086516	0.272180168435027	0.583708684767249
Merged-chr2-144270655-4	chr2	144270559	144270759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289630)	promoter-TSS (NM_001289630)	-87.0	NM_024225	69178.0	Mm.273379	NM_024225	ENSMUSG00000027423	Snx5	0910001N05Rik|1810032P22Rik|AU019504|D2Ertd52e	sorting nexin 5	protein-coding	7.44243813078764	7.58696903537539	7.81705017031234	7.0731107743179	7.6258584650751	7.67918329570611	7.85705991254573	7.81174680020064	0.328919452082856	0.118909057239321	0.381459698271032
Merged-chr7-105737365-4	chr7	105737233	105737433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025897)	promoter-TSS (NM_025897)	52.0	NM_133951	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	5.62160203981335	5.93144614605473	5.72551678312433	5.88821648659262	5.79669668435798	5.56623832905082	5.64647440978824	5.5639113059678	-0.251251317666544	0.337258923063683	0.647019923788997
Merged-chr11-83299006-4	chr11	83298908	83299108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134025)	promoter-TSS (NM_134025)	-31.0	NM_134025	103737.0	Mm.102205	NM_134025	ENSMUSG00000018733	Pex12	AI451906	peroxisomal biogenesis factor 12	protein-coding	7.32885006977155	7.59498298265986	7.20809375252134	7.42814314884457	7.65552991385666	7.66588222940727	7.51517598019426	7.50211600102292	0.246255650921969	0.173629326874188	0.46772742904204
Merged-chr6-115037885-4	chr6	115037779	115037979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026894)	promoter-TSS (NM_026894)	-5.0	NM_026894	68971.0	Mm.24937	NM_026894	ENSMUSG00000030316	Tamm41	1500001M20Rik|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding	6.28785584267871	6.28701457789595	5.99133908070003	6.11975714448229	5.75153702688591	6.16745498855679	6.20286556553105	5.91813680328697	-0.253724316646607	0.309839238612498	0.62199416660177
Merged-chr5-124440223-1	chr5	124440123	124440323	+	1000.0	f0_c57.idr	intron (NM_001310725, intron 1 of 6)	CpG	293.0	NM_001310725	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	4.70991246108997	5.17229972886112	4.75209533693822	4.28421860310706	4.82235635436915	5.395503156934	5.04986734410408	5.16330342532101	0.708054597042433	0.0640702116912643	0.268910525265199
Merged-chr6-83636105-3	chr6	83636005	83636205	+	954.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20011.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	4.41295043452658	3.87185906799473	4.49611251326249	5.10366333559156	4.24121251745749	3.96134544053175	4.69211744985341	4.32284096670388	-0.513349987090765	0.307166975048507	0.619358168218558
Merged-chr10-22645342-3	chr10	22645257	22645457	+	735.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178934, intron 1 of 4)	CpG	346.0	NM_178934	353169.0	Mm.473705	NM_178934	ENSMUSG00000037490	Slc2a12	GLUT-12|Glut12	solute carrier family 2 (facilitated glucose transporter), member 12	protein-coding	3.32879680021653	3.18895389284751	3.22937417018874	3.30944154617993	2.61747624461899	2.83539940341785	2.86302274398166	2.72684106287452	-2.51840153031993	0.000310617835813472	0.00521572704302126
Merged-chr2-101175314-4	chr2	101175212	101175412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-449436.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	6.87143068003853	6.839002563054	6.84617851615158	7.1727253821199	6.57843821219737	6.1072136324971	6.87622248493143	6.63871044594038	-0.52140859085069	0.0286905050277834	0.162676547885319
Merged-chr9-121719509-2	chr9	121719409	121719609	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010918, exon 2 of 17)	exon (NM_010918, exon 2 of 17)	328.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	6.24751347183976	6.70926469417338	6.90189359484038	6.16492219498377	6.79165326923374	6.42674757443098	6.67122273942903	6.2027529984069	0.023135399357049	0.932247709983727	0.975557708124667
Merged-chr9-92490069-3	chr9	92489973	92490173	+	885.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178711, exon 8 of 9)	exon (NM_178711, exon 8 of 9)	32695.0	NM_178711	235527.0	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding	4.19177630827946	4.09217768275771	4.50965040429237	5.07847577312763	3.89223489749563	3.54890042003884	3.63071952620215	3.83038785672861	-2.13435250220085	5.6258028361811e-05	0.00125254619980148
Merged-chr18-80204731-4	chr18	80204642	80204842	+	776.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-2056.0	NM_001038608	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	3.99328763221941	3.6010796386024	3.61150206863085	3.79322054738413	4.05557472505656	4.06885372973698	4.19114878146467	4.16780685550729	0.983123482144933	0.0247906289458552	0.147612734481722
Merged-chr5-147911907-4	chr5	147911811	147912011	+	904.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17096.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	4.31730308806065	3.77251649048043	4.27332073142752	4.1110657176781	4.59853186277658	4.25627524907756	4.63877918728415	4.44039031016986	0.876089060257611	0.0318369297000294	0.174156226492345
Merged-chr9-47652748-4	chr9	47652639	47652839	+	708.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	122387.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	4.53485025586646	4.37054736701786	4.24552882855891	4.60322781141579	4.16351020874528	4.27479905533979	4.02872127770462	4.41647686992092	-0.555996267794742	0.162397017591355	0.451604052005589
Merged-chr13-103411999-3	chr13	103411898	103412098	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77506.0	NM_175171	328329.0	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	5.09213379793264	5.16028032233671	5.09305231586252	4.95273931096175	3.89597587359005	4.40650876703369	3.90696294411936	3.91973913307007	-2.47243479519246	3.96866446545315e-09	2.2744409660748e-07
Merged-chr2-129592716-4	chr2	129592619	129592819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291021)	promoter-TSS (NM_001291021)	-120.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	8.11248459892827	8.03466363196046	8.21790311664118	8.07551361697999	8.28904142496443	8.34747288155589	8.38389340147061	8.18876324899581	0.248964982392323	0.105450562887679	0.357405152887106
Merged-chr8-71366815-4	chr8	71366673	71366873	+	843.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145780)	promoter-TSS (NM_001145780)	-75.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	3.43233176054903	3.4208688190657	3.85425906103018	3.0573128045487	3.64509624922604	3.72722714988479	3.83635678229082	3.75868649241668	0.887962442100592	0.098387421366401	0.343964551347694
Merged-chr1-128014141-4	chr1	128014030	128014230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 8 of 20)	B4|SINE|B4	88341.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	6.12355293504175	5.5333197760177	6.41012013112766	6.4952887179001	5.63043060067642	5.60561398648631	6.37707522258829	6.23496252731826	-0.294365861614669	0.375104457210199	0.678186534190177
Merged-chr4-108519026-4	chr4	108518930	108519130	+	652.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175472, intron 15 of 30)	ORR1F|LTR|ERVL-MaLR	59604.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	4.00048346103663	3.75144460058161	3.60290864283828	3.46188338126385	3.8201020702172	3.39086872417994	3.89506809721819	4.04047886894001	0.287665271873526	0.57271935365382	0.811303975833885
Merged-chr1-55821318-3	chr1	55821206	55821406	+	881.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109935.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	3.83648434178375	3.84967908593351	4.42270686242857	4.0277719044135	3.55183182704551	3.33157038382324	3.54815678253407	3.61921848639115	-1.6352519612769	0.00157871415915235	0.0194691300278255
Merged-chr7-35106780-3	chr7	35106683	35106883	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEb|LINE|L1	-12510.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	4.82316290134738	4.72160084635907	4.60634795233309	5.13541256298399	4.21051637273505	4.65724408311119	4.22581382942999	4.24107270215344	-1.14854534118265	0.00340049218555717	0.0352268422756184
Merged-chr9-32159401-3	chr9	32159325	32159525	+	911.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195632, intron 4 of 21)	intron (NM_001195632, intron 4 of 21)	43289.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	3.94313439827121	3.98007731722484	4.38300381637303	4.38588699348401	3.60416555372434	3.54185657961594	3.54509041081108	3.49056507696177	-1.95332434962472	9.59852088916119e-05	0.00196156508288718
Merged-chr12-86803888-4	chr12	86803771	86803971	+	916.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	69502.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	4.91009644657388	4.51999608579131	5.32353593755285	4.86466590236538	4.69996066263062	4.81749450096804	4.9545184746921	4.79842324765923	-0.224808254389676	0.53259341284868	0.788200754532765
Merged-chr10-78457268-3	chr10	78457125	78457325	+	788.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172134, intron 1 of 10)	intron (NM_172134, intron 1 of 10)	7723.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	3.07433359015909	3.33647267911151	3.07465891395377	3.38533234024245	3.19443814580499	3.48566868377755	3.30481912254693	3.31590861575752	0.318452190682867	0.566385130502302	0.807861795964639
Merged-chr15-57761437-4	chr15	57761334	57761534	+	975.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	66767.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	5.03308713462979	5.26133734943007	5.63027994797548	5.86521338938844	5.5673794503084	5.72544464252349	6.33808505733353	5.97241424067966	0.701216817770857	0.0393139822564993	0.199609811187343
Merged-chr17-5211046-4	chr17	5210950	5211150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	207717.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	6.17089573210718	6.506267939408	6.51404676255011	6.59411171188453	5.89297953712945	5.88196858551356	5.80651459504583	5.63940614731956	-1.0101105828757	3.45900729260314e-05	0.000818785101696705
Merged-chr11-34048886-5	chr11	34048891	34049091	+	954.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 1 of 20)	intron (NM_010696, intron 1 of 20)	2063.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	4.27781834632939	4.158585368423	3.87283415130721	3.67207248648075	4.18865774323959	3.99498106734601	3.74801769628834	3.92251176594811	-0.0733220102366811	0.87652471301779	0.953657065633782
Merged-chr1-152015784-4	chr1	152015684	152015884	+	752.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 1 of 5)	intron (NM_197990, intron 1 of 5)	74536.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	4.81956536173215	4.77797968153154	4.88659992906296	4.87780352621741	4.36947468058432	4.60150045511303	4.40503934218615	4.32584097234183	-0.924855828594816	0.00881203993158408	0.0720542435715363
Merged-chr10-44659716-4	chr10	44659601	44659801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-200953.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	7.80146720436171	8.18520763678076	7.83291489844834	7.72606284192354	7.61534574794661	7.99535048701238	7.54054838419922	7.44793124898046	-0.303659309674819	0.134020882254797	0.407669759744197
Merged-chr18-38228605-4	chr18	38228525	38228725	+	910.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-18863.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	4.63045892084364	4.17233790352857	4.20779280135173	4.68656907300148	4.26448955553331	4.33512191941223	4.45762138102608	4.66356185991963	-0.0533069964989757	0.895728946948141	0.960963015915927
Merged-chr2-152709274-4	chr2	152709175	152709375	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001159551)	TTS (NM_001159551)	22127.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	5.36279211077244	5.19476373643887	5.14322696379516	5.39321125058235	5.43037273624924	5.01667074781654	5.49828174555727	5.54743654741947	0.192662352462929	0.519719000161163	0.780280082524181
Merged-chr2-13439122-4	chr2	13439022	13439222	+	887.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 22 of 66)	intron (NM_001081084, intron 22 of 66)	52754.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	4.40514964429368	4.67205371202822	4.13452474539789	4.11611645601768	4.29221187217914	4.26049453310124	4.30220959018946	4.27467843458305	-0.150294443592433	0.712409574937104	0.884871428029492
Merged-chr1-92216894-4	chr1	92216806	92217006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36565.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	7.44607372244362	7.64990009103211	7.59321718623291	7.4693043543849	7.52507505772007	7.4487072680505	7.70910707027767	7.243648875681	-0.0607630307765116	0.742938992732205	0.898691548174051
Merged-chr6-86659145-4	chr6	86659041	86659241	+	862.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010751, intron 3 of 5)	intron (NM_010751, intron 3 of 5)	10018.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	3.76640595914259	3.96212436325086	4.29936489256585	4.5443891705274	3.85768983198725	4.05766303664592	4.06634838874152	4.03386190034206	-0.49951800623915	0.285680563260893	0.597403017136955
Merged-chr14-34514297-2	chr14	34514197	34514397	+	956.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_030062, intron 2 of 2)	intron (NM_030062, intron 2 of 2)	8504.0	NM_030062	78243.0	Mm.117483	NM_030062	ENSMUSG00000021797	9230112D13Rik	-	RIKEN cDNA 9230112D13 gene	protein-coding	3.24051304137241	3.284617782994	3.30006980793592	3.31262368581821	3.43528024966176	3.005731977777	3.49758747556307	3.51057922814309	0.336743537950027	0.537304630514539	0.790999096078477
Merged-chr3-54719150-4	chr3	54719043	54719243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358017, intron 20 of 24)	intron (NM_001358017, intron 20 of 24)	16221.0	NM_027148	69639.0	Mm.29253	NM_027148	ENSMUSG00000027752	Exosc8	2310032N20Rik|CIP3|mKIAA4013	exosome component 8	protein-coding	6.3976441217655	6.25419800940758	6.34422214696183	6.85192474960992	6.47258399483035	6.25502004878833	6.69156170447455	6.3396859947248	-0.0746850890530281	0.767374581851199	0.909004900573458
Merged-chr10-80677966-4	chr10	80677878	80678078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1685.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	7.22030746640015	6.91614591474523	6.97921178718214	6.87486165186657	7.01467188573436	7.03611079284118	7.02973099049067	7.02418423208678	0.0430243292179814	0.823478964711805	0.932313798231142
Merged-chr2-140844234-4	chr2	140844137	140844337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-172761.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	5.94156598600162	6.40680187445312	6.21724279071519	6.18663082847791	6.36876701608501	6.16558197568808	6.10751716296343	5.76176331333012	-0.110062333635291	0.668969647955196	0.863357017638244
Merged-chr4-128689956-4	chr4	128689850	128690050	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 1 of 14)	intron (NM_018774, intron 1 of 14)	1212.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	5.43160447243828	5.25381032450758	5.34864707104556	5.46497132918991	5.41692158717211	5.16111147251631	4.88058880698176	5.37348665214062	-0.266000662033283	0.382933738996601	0.684806264846199
Merged-chr5-120088769-3	chr5	120088680	120088880	+	845.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27733.0	NM_028762	74111.0	Mm.41022	NM_028762	ENSMUSG00000029594	Rbm19	1200009A02Rik|AV302714|NPO	RNA binding motif protein 19	protein-coding	4.07080546005813	3.96838353786733	3.57724890343023	3.76611904016629	3.71692363223437	3.81105344137022	3.62245907075279	3.79606603906879	-0.347459325993842	0.459111113776383	0.74170765693035
Merged-chr7-100493702-3	chr7	100493621	100493821	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011671, intron 1 of 7)	intron (NM_011671, intron 1 of 7)	363.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	6.97113641383542	7.09670653602701	6.44169290683813	6.30101783016206	6.28149186361648	6.60123188844389	6.09624620340901	6.00706763701097	-0.696367515819643	0.0137337411378073	0.0986630965329011
Merged-chr8-79448791-3	chr8	79448718	79448918	+	922.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-49350.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	4.07315239199403	3.9707102528381	3.80081586249451	3.76827702628266	3.74681956163298	3.69717204514627	3.78510554996657	3.51683685492947	-0.621275444591847	0.184012393256727	0.48125702884897
Merged-chr10-80142300-4	chr10	80142185	80142385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025313)	promoter-TSS (NM_025313)	10.0	NM_001347092	66043.0	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|Atp5f1d|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	7.7272476976755	8.13669181151174	7.40005704322034	7.55459531890886	7.87564150751515	7.71584539221508	7.85555713640744	7.49509962328306	0.015986322545504	0.940769555868961	0.978654793543509
Merged-chr7-88270716-4	chr7	88270618	88270818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7367.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.95954867281904	6.84589984326043	7.3857027331304	7.08428531282938	6.53784414111505	6.97602912978836	6.95046532727223	6.50415396600166	-0.459852355845326	0.0466509548497464	0.222057620095397
Merged-chr1-179668216-4	chr1	179668136	179668336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178653)	promoter-TSS (NM_178653)	5.0	NM_178653	109232.0	Mm.136458	NM_178653	ENSMUSG00000038936	Sccpdh	AW214504|C330023F11Rik	saccharopine dehydrogenase (putative)	protein-coding	6.00418326513978	5.89001625845977	5.54848386828796	6.35400069984852	5.87078029820907	6.11479532940269	5.97454523781086	5.88970725451285	-0.0663429427433983	0.813812315724505	0.928107164238675
Merged-chr5-34501785-4	chr5	34501704	34501904	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139064, intron 2 of 5)	intron (NM_139064, intron 2 of 5)	12175.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	4.85980329479842	5.31607879827545	4.86059690019687	4.61772739524496	5.07384372262422	5.52912052117712	5.48323245767937	5.29731215284942	0.790122276523882	0.0204736938289948	0.130034536722943
Merged-chr18-69400805-4	chr18	69400717	69400917	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	54657.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	5.67570285904077	6.0532274555594	5.21650357331223	5.74227197121445	5.79842687189369	5.77293527882138	5.81557751490364	5.69818578645951	0.0973920345111412	0.734729980907826	0.89516046054632
Merged-chr2-132602005-4	chr2	132601906	132602106	+	969.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 1 of 3)	intron (NR_033469, intron 1 of 3)	3810.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	4.99406077969158	4.45392263019748	4.57311806331389	4.775882956223	4.85372513357787	4.57245366278079	4.63226636239644	4.43879446211641	-0.156216996936475	0.673580658448177	0.865835910132604
Merged-chr16-77268982-2	chr16	77268882	77269082	+	951.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60346.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	2.65215766783938	2.4448534997923	2.532985224468	2.30333328955076	2.22602364905851	2.50580598212969	2.39366470229927	2.40018727781729	-0.590464884081505	0.42259806469641	0.714839748072846
Merged-chr2-45262140-4	chr2	45262024	45262224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144682.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.87429521131017	7.98595389594154	7.80127300383742	7.83582153929532	7.62926578830271	7.7341866086334	7.76345135124893	7.72510208838648	-0.215304418535769	0.184658437734856	0.482270600261588
Merged-chr10-44665807-6	chr10	44665744	44665944	+	999.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-207096.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.9305280759422	5.70660806553583	5.41151496388745	5.1180253137218	5.28048446908317	5.03138765266237	4.82874810979932	5.20605371775522	-0.402370176320854	0.244078283462738	0.5551622719561
Merged-chr14-75284315-4	chr14	75284209	75284409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026083)	promoter-TSS (NM_026083)	-57.0	NM_001359875	67302.0	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding	7.08617556739169	6.94715037337658	6.98863080637216	6.94689834822145	7.39366064799676	7.21578936456909	7.03985342343656	7.09423426660525	0.290271503424711	0.130328343836868	0.401881955810095
Merged-chr4-62780618-4	chr4	62780520	62780720	+	930.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106646.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	4.53514516830056	4.4488509045739	4.72332718345611	4.80754492751153	4.5346969426221	4.2352515140356	4.34405323016341	4.57268490555522	-0.474502308574663	0.207233959823522	0.511181071672855
Merged-chr7-25181633-4	chr7	25181538	25181738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26569.0	NR_045848	434147.0	Mm.59171	NM_001033781	ENSMUSG00000074274	D930028M14Rik	EG434147	RIKEN cDNA D930028M14 gene	ncRNA	6.10435085628692	5.77903610199925	5.42337251056105	5.70256264213479	6.02698891171761	5.75259694459544	6.01668416802987	5.62714773351616	0.167809239736743	0.549521861127804	0.798032733475074
Merged-chr10-79926992-4	chr10	79926899	79927099	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007880)	promoter-TSS (NM_007880)	-44.0	NM_001288626	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	5.74487220877212	5.53783823393771	5.01925955134218	5.39644353964495	5.9091005012627	5.45463857570496	5.54490684668057	5.71852861288605	0.391347494385399	0.195534734583431	0.496372692409141
Merged-chr8-122281484-4	chr8	122281394	122281594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009569)	promoter-TSS (NM_009569)	-647.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	8.7132338427665	8.70595520077766	8.56099068158177	8.34804748024746	8.73047380527667	8.95082152915804	8.84151581046632	8.67896028223404	0.273619265924465	0.0947704785093536	0.336870108015143
Merged-chr1-191119104-4	chr1	191118978	191119178	+	962.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20664.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	5.55965309387231	5.67412480816513	4.92804259493609	5.19260988328179	4.92077134502992	4.98724845819396	5.40865046038881	4.80261437722534	-0.592742480559199	0.0932579422898463	0.334038198180806
Merged-chr1-166429206-4	chr1	166429098	166429298	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19370.0	NM_175170	71592.0	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	5.17679917836612	5.30684600370725	4.8847522670632	5.36521280967624	5.19142856429517	5.06501472566338	5.69699408986269	5.35671829952425	0.251767617737745	0.437801226086474	0.726003622104912
Merged-chr1-182504430-4	chr1	182504334	182504534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009794, intron 2 of 20)	intron (NM_009794, intron 2 of 20)	13176.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	6.77676899878485	7.51378329916744	6.87799096431108	6.80135399967799	6.88543397302362	7.09548059590801	7.00939525780259	6.90027660466581	-0.0798356061337296	0.737649808527796	0.896392006995728
Merged-chr8-85512457-3	chr8	85512353	85512553	+	844.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 6 of 11)	intron (NM_173866, intron 6 of 11)	19836.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	3.9208545067669	3.91320330063156	3.49623920098532	3.69867867176416	3.92315706945647	3.61195129851886	3.85861083179059	3.67040375380323	0.0381489747691016	0.936163895788723	0.976869657372429
Merged-chr9-49486163-4	chr9	49486069	49486269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172770)	promoter-TSS (NM_172770)	56.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	6.96362940700315	6.92448540420579	7.08738616691601	7.11826465978458	6.68649483637245	6.97743871527102	7.32238520456676	6.97272546893082	-0.0375992127422031	0.861061021024713	0.947524195989914
Merged-chr7-105554347-4	chr7	105554242	105554442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011421)	promoter-TSS (NM_011421)	-18.0	NM_011421	20597.0	Mm.4628	NM_011421	ENSMUSG00000037049	Smpd1	A-SMase|ASM|Zn-SMase|aSMase	sphingomyelin phosphodiesterase 1, acid lysosomal	protein-coding	7.03572083522742	7.07837225608746	7.03694609974257	7.40039953934496	6.96427272397142	7.0554285194529	7.24829828525082	7.18414249418421	-0.0665666446335388	0.74226928263156	0.898494026733066
Merged-chr8-111370013-2	chr8	111369917	111370117	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178086, intron 1 of 6)	intron (NM_178086, intron 1 of 6)	23804.0	NM_178086	338521.0	Mm.41083	NM_178086	ENSMUSG00000033579	Fa2h	FAAH|Faxdc1|G630055L08Rik	fatty acid 2-hydroxylase	protein-coding	2.8743974555511	2.66329214955081	2.93615914686837	2.51171295571658	2.85679196057434	3.04750275643618	2.86420960120897	3.04905406206302	0.953502919330568	0.1358241077512	0.410243322164528
Merged-chr12-35038790-4	chr12	35038692	35038892	+	977.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8397.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	5.7057991104017	5.13778823117833	5.33188090621665	5.78799272634055	4.89180184458927	5.06398817348094	5.04981528190182	5.07097601858271	-0.947107784320953	0.00337921141328099	0.035052300959768
Merged-chr3-123798022-3	chr3	123797914	123798114	+	808.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107162.0	NR_121616	83398.0	Mm.443908	NM_031186	ENSMUSG00000027977	Ndst3	4921531K01Rik|4930511P15Rik|N-HSST 3|NDST-3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	protein-coding	2.96343909641116	2.69437708201988	3.01532952136201	3.10799609755709	2.31766946560607	2.48121842200186	2.37198023247352	2.45517574443084	-3.83057782159879	0.000121874993678709	0.00239110809676319
Merged-chr19-53945506-4	chr19	53945433	53945633	+	827.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195338)	promoter-TSS (NM_001195338)	657.0	NM_019658	56392.0	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	4.1355557243185	3.66966154271629	3.96074202789921	3.95065186110664	3.80300294639349	4.03464058627583	3.89616473013937	3.64028903934619	-0.251368238243791	0.583175899020787	0.816930593489739
Merged-chr2-90528302-4	chr2	90528194	90528394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-49120.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.6293070749923	7.16339206562687	6.86496255292547	6.14549875270337	7.05438941691003	7.04144217059503	6.89490007041958	6.62574117059064	0.242601253766643	0.369034071980638	0.673404163599093
Merged-chr2-59343013-4	chr2	59342908	59343108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 16 of 20)	intron (NM_175464, intron 16 of 20)	43674.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	6.24978486621729	6.43203946437322	6.42952985279834	6.40147951276773	6.24443959621813	6.15102464550855	6.07768092540597	6.33885117968619	-0.262016032106545	0.237473426341648	0.547644711485644
Merged-chr6-116050786-1	chr6	116050686	116050886	+	859.5	f0_balb.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-55781.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	3.65977486624642	3.43079679248532	3.42561433500091	3.59348067611868	3.11193764498681	3.02797958556269	3.24613706327407	3.25585080628726	-1.43093865295324	0.010551819986198	0.0820929057599287
Merged-chr7-111015108-4	chr7	111015014	111015214	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13837.0	NM_009431	22083.0	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	4.91869442611968	5.11175369707361	4.71542407550324	4.79329520101966	5.41574437014545	5.16836725795729	5.30832824359459	5.27584005440385	0.781408672178129	0.0110046828862174	0.0845077487493869
Merged-chr17-71294819-4	chr17	71294815	71295015	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	L2c|LINE|L2	16096.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	4.07943710065445	3.99844519211061	4.08004688521533	3.90725174590086	4.17700860871965	4.20408470698867	4.06240989923868	4.03001789201596	0.301382539815379	0.459837417539109	0.742271214480192
Merged-chr19-6062138-4	chr19	6062006	6062206	+	946.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028454)	TTS (NM_028454)	899.0	NM_013859	29805.0	Mm.2310	NM_013859	ENSMUSG00000075227	Znhit2	C11orf5|Fon|ORF6|Znhit2-ps	zinc finger, HIT domain containing 2	protein-coding	4.17186392590627	3.73744488639794	3.88501113147212	3.95346387717311	4.11783828119415	3.83570437427617	3.63845333474712	4.65955065230005	0.464921961523498	0.356193950792565	0.662704502355483
Merged-chr7-130762767-3	chr7	130762659	130762859	+	879.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021314, intron 17 of 17)	intron (NM_021314, intron 17 of 17)	-11310.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	3.71223322206785	3.61488633979368	3.85801977511347	3.32927233856089	3.90938462341087	3.40839371127472	3.74693810050832	3.76079695236314	0.288078052580513	0.572679485251681	0.81127979064045
Merged-chr18-57879464-3	chr18	57879406	57879606	+	740.2023929999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009194, exon 1 of 27)	exon (NM_009194, exon 1 of 27)	828.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	3.45818218592653	3.5715548726467	3.94116924756351	3.37200278679498	3.30493402318557	3.45116185121958	3.55633005054488	3.67193188794936	-0.314919431718678	0.550813594919428	0.798698284283594
Merged-chr9-63132941-4	chr9	63132809	63133009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14071.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	7.02485739213046	7.07878044956466	6.34930351146704	7.11043512293675	6.69713588012388	6.67717847399221	6.73439485622529	6.40303224139267	-0.423713938330259	0.0812114279786235	0.309269072392619
Merged-chr7-133122240-7	chr7	133122197	133122397	+	854.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 1 of 10)	CpG	1186.0	NM_009980	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	3.53401311195324	3.44981543748471	3.53450408665233	3.63295501719794	3.49517499679167	3.75381306302792	3.22791504453016	3.30131572289048	-0.278088274267104	0.594478866678632	0.823413789941784
Merged-chr3-68717498-1	chr3	68717398	68717598	+	664.666687	f0_balb.idr	Intergenic	Intergenic	26074.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	3.52457677200765	3.79086571324062	4.16062827281711	3.85051081283605	3.69716585594093	3.82083040989417	3.74081502885316	3.8554428699117	-0.212453677105562	0.653284659617019	0.854997557892684
Merged-chr7-126626016-4	chr7	126625897	126626097	+	782.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019738)	promoter-TSS (NM_019738)	-527.0	NM_019738	56312.0	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	3.89568679607571	4.08328422314604	3.62392518042378	3.60377725485404	3.78737016516609	3.85995519230113	3.87962379290551	4.15870313573106	0.328746075760595	0.482639770529254	0.757421686487144
Merged-chr1-74788090-4	chr1	74788041	74788241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3878.0	NM_009518	22409.0	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	4.20000329609853	4.40724308417345	4.24850562811725	3.89744245112546	4.51141488758959	4.46868406902759	4.27554015126714	4.6795096734549	0.730176536684164	0.068761161982522	0.280189532216277
Merged-chr4-94603216-4	chr4	94603115	94603315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172695)	promoter-TSS (NM_172695)	32.0	NM_172695	18786.0	Mm.490101	NM_172695	ENSMUSG00000028577	Plaa	2410007N06|AI536418|AU018445|AW208417|D4Ertd618e|PLA2P|PLAP|Ufd3	phospholipase A2, activating protein	protein-coding	7.42180031715989	7.43724879406968	7.51095279620946	7.46066892507609	7.8902651778941	7.98850394973898	7.87282415787026	7.60539060257597	0.511625438932115	0.00306641976235724	0.0325476725715517
Merged-chr7-28338315-2	chr7	28338215	28338415	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013676, intron 2 of 29)	CpG	404.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	3.65928023810861	3.66652621555771	3.6597829615645	3.38702988417206	3.56690663689362	3.8898008238513	3.94221584494461	4.20019457717295	0.966630486394551	0.0460494811774478	0.220279302468384
Merged-chr18-61087102-4	chr18	61087026	61087226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18446.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	6.40748846130473	6.30991678747928	6.83274248550025	6.85680050529979	6.39433094812335	6.30641752601136	6.58964403388396	6.57235504195257	-0.240464980136238	0.317584600571675	0.629525367799507
Merged-chr7-89980537-4	chr7	89980444	89980644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021876, exon 1 of 12)	5' UTR (NM_021876, exon 1 of 12)	432.0	NM_021876	13626.0	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	7.68591431860947	7.962047824903	7.73624490091822	7.69219725351183	7.76160010763624	7.8048776335365	7.78352898249945	7.58679308963066	-0.0462399753500878	0.787626367723395	0.917636852222575
Merged-chr3-113630100-4	chr3	113629920	113630120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026043, exon 1 of 15)	exon (NM_026043, exon 1 of 15)	129.0	NM_001287015	67225.0	Mm.316928	NM_026043	ENSMUSG00000027981	Rnpc3	2810441O16Rik|AI447568|C030014B17Rik	RNA-binding region (RNP1, RRM) containing 3	protein-coding	7.68243732435197	7.94300682516606	8.25877272479625	7.90542994408055	7.65479724950823	7.82692719108648	7.63773322148421	7.82266469612122	-0.294184940093371	0.115103933821301	0.375422103710937
Merged-chr4-88865392-4	chr4	88865296	88865496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14805.0	NM_177348	230405.0	Mm.246593	NM_177348	ENSMUSG00000045364	Ifne	Ifn-tau-1|Ifne1|Ifnt1|Infe1	interferon epsilon	protein-coding	6.5031166432205	6.30080418490491	6.23032358018102	6.62047658527473	6.93443375619326	6.59561990533013	6.35108607871757	6.14165018785285	0.176322756279853	0.499988641365374	0.768621042368493
Merged-chr15-98511485-4	chr15	98511392	98511592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8342.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	6.11561503767525	6.14996098796134	6.39238128697522	6.54852222521186	6.28892512184951	5.70905171741013	5.86248449068029	6.04915352802283	-0.483352809980445	0.0681454275723416	0.278653609994353
Merged-chr8-125416391-3	chr8	125416274	125416474	+	871.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76459.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	3.00360406381431	2.98626629118964	2.91983664345342	2.51751898404116	3.78241730458784	4.26710670396242	3.99820212695993	3.8922363086842	4.86914153366323	4.21222295136699e-13	4.87515150333904e-11
Merged-chr11-51926406-4	chr11	51926296	51926496	+	957.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41235.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	3.92642540476897	4.21105446838967	4.52053508667931	4.18505156777909	4.75121194145421	4.43422202719359	4.57564517075999	4.83216551445337	0.997268291684946	0.0106783934825946	0.0828241658164544
Merged-chr6-129518205-4	chr6	129518095	129518295	+	843.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081186, exon 5 of 5)	3' UTR (NM_001081186, exon 5 of 5)	5638.0	NM_001081186	330428.0	Mm.44237	NM_001081186	ENSMUSG00000030160	Tmem52b	D630042F21Rik	transmembrane protein 52B	protein-coding	4.09769670100738	4.09160571047637	4.00138970588213	4.23545043367992	3.87178175614957	4.07235779498561	4.25281307833865	4.14160283125273	-0.0888123109009989	0.832140673754522	0.935732650076196
Merged-chr10-70251396-4	chr10	70251323	70251523	+	908.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025807, intron 1 of 5)	intron (NM_025807, intron 1 of 5)	6147.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	4.19421089133437	3.98490917174845	4.04685162933754	4.34990505581281	4.2810191850004	4.4120472761549	4.3884070470954	4.32483569561077	0.442020529229061	0.270074707907649	0.581882363233905
Merged-chr3-95888862-4	chr3	95888765	95888965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001346514, exon 3 of 6)	exon (NM_001346514, exon 3 of 6)	3140.0	NM_153513	229600.0	Mm.89556	NM_153513	ENSMUSG00000038543	BC028528	L259	cDNA sequence BC028528	protein-coding	5.84517578038897	6.2475634742548	5.96354782545982	5.99747869046929	6.15544654373821	6.22497848736887	5.66086548557189	6.04584335634212	0.0281570024604749	0.913531571334637	0.967557224197028
Merged-chr11-107378355-4	chr11	107378259	107378459	+	977.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	92361.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	4.85126809833277	4.49400956115611	5.31223029653194	4.74571510517711	4.73097190400994	5.13132082516246	4.86499195490478	4.95518244342533	0.0943600935309122	0.796827542056707	0.921379983040993
Merged-chr19-4214421-7	chr19	4214282	4214482	+	873.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310039)	promoter-TSS (NM_001310039)	-7.0	NM_001310039	56708.0	Mm.347919	NM_019952	ENSMUSG00000040663	Clcf1	BSF-3|Bsf3|CLC|NNT-1	cardiotrophin-like cytokine factor 1	protein-coding	3.99404351339702	4.37450433007402	3.66970897946517	3.47404699582363	4.28346137145555	4.21377694137494	3.52945305404531	3.94335319261814	0.266114605305529	0.623713256419652	0.839108068902005
Merged-chr15-79396948-4	chr15	79396877	79397077	+	912.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172608, intron 1 of 8)	intron (NM_172608, intron 1 of 8)	5942.0	NM_001253817	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	5.09185164272226	5.47904849889507	4.83028914910989	4.77064737550108	4.50460653198075	4.96853706532196	4.10981533521241	4.44975020909418	-1.10235133480139	0.00833363328929747	0.0691029454681855
Merged-chr2-118901862-2	chr2	118901762	118901962	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045523, intron 1 of 6)	CpG	247.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	3.25978991416277	3.21181855809909	3.19325045589536	3.13807256844997	3.51859402665551	3.91360553837401	3.58826197476114	3.6987063421142	1.65168595668459	0.00116106751278742	0.0151806804725746
Merged-chr5-121592631-3	chr5	121592540	121592740	+	841.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009656, intron 1 of 12)	PB1D10|SINE|Alu	1184.0	NM_009656	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	3.51687061189899	2.93205144318588	3.31911282443394	3.18584240954962	3.11037164845807	3.19504654556394	3.19486562255469	3.14538987071648	-0.341318609393016	0.553574999827281	0.800270424938685
Merged-chr3-103021509-1	chr3	103021409	103021609	+	1000.0	f0_c57.idr	intron (NM_001310693, intron 1 of 17)	intron (NM_001310693, intron 1 of 17)	963.0	NM_144901	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	4.86450975930247	5.22839445170755	5.01609685701312	4.88599884172969	5.1994144007568	5.22606883000482	5.24674859114011	5.4067122070607	0.505642496647237	0.0964056382251802	0.340242347924034
Merged-chr2-91090431-3	chr2	91090324	91090524	+	837.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6254.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	4.0267818980267	3.90370016233831	3.98135000580619	3.75881507880423	4.2076032090654	3.72063491955772	3.96412545228907	3.77651824484208	0.089949685601312	0.843653960357345	0.940687425136507
Merged-chr19-34195884-3	chr19	34195789	34195989	+	839.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	2955.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	3.25932266101896	3.04126729697362	3.43135496753396	3.75604961830773	3.03020181942618	3.43340151079689	3.41740215973456	3.42940367998795	-0.256534566510946	0.669685242277162	0.863573424037938
Merged-chr13-20428838-2	chr13	20428734	20428934	+	872.833374	f0_balb.idr|f1_balb.idr	intron (NM_080288, intron 15 of 21)	intron (NM_080288, intron 15 of 21)	-44156.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.60002391228579	3.25868038988405	3.69585604955385	4.321046979852	2.88420722538404	3.098504216551	3.04927583998212	2.98180347584397	-3.20433441327052	8.17870933706077e-06	0.000230464113975712
Merged-chr6-39781895-4	chr6	39781791	39781991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29045.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	6.84965194904913	6.88525905788071	7.00726435621527	7.19017724077953	7.04343681081853	6.98541777433444	6.75957260094391	6.77464503765636	-0.139320891712584	0.499170057034976	0.768207716806231
Merged-chr2-159646125-4	chr2	159646029	159646229	+	921.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-301212.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	4.5059132637749	4.01284760239966	3.9782142820272	4.34445557838062	4.38960088809757	4.04545221762814	4.33369914765182	4.17706668996948	0.0380403974307515	0.928343293184926	0.973969592850704
Merged-chr4-8912183-1	chr4	8912083	8912283	+	1000.0	f0_c57.idr	Intergenic	Intergenic	160859.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	4.79015724740335	4.64149448090624	4.36515112653595	4.22282857875814	4.86116816207731	5.13092323175633	5.02677327257729	4.5923352628318	0.857405798182357	0.0216853911944547	0.135055075669795
Merged-chr17-5238891-6	chr17	5238728	5238928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	179939.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	5.67814255406798	5.7262653649489	5.57962349870132	5.30921838444366	5.27329490390322	5.46694834624903	5.41584028631309	5.52285469482091	-0.264792543006125	0.355720203913772	0.662423367982063
Merged-chr2-92058663-4	chr2	92058580	92058780	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-34510.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	4.97327936673305	5.06065139332169	4.61500576934737	4.76689889361017	4.87073387347218	5.24690838753158	5.01725960771477	5.30505219222964	0.491078475920186	0.140777292817022	0.417324848003949
Merged-chr19-8843139-4	chr19	8843050	8843250	+	940.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008144, intron 3 of 10)	intron (NM_008144, intron 3 of 10)	2647.0	NM_001290823	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	4.69216938810797	4.58030815811359	4.79646102292456	4.49767228393484	4.31908334004838	4.49626109485029	4.30070080325103	4.57711946816438	-0.481931741772532	0.191492873513237	0.49089790548868
Merged-chr16-78302023-4	chr16	78301925	78302125	+	769.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025192, intron 1 of 6)	CpG	354.0	NM_001276263	13052.0	Mm.66222	NM_009988	ENSMUSG00000022865	Cxadr	2610206D03Rik|AU016810|AW553441|CAR|MCAR|MCVADR	coxsackie virus and adenovirus receptor	protein-coding	3.93867857476514	3.86828673396343	4.49105709200649	4.08705774036611	3.61136078700734	3.78603172606004	3.59062963049556	4.03201039598479	-0.991543761505102	0.0410783275404506	0.205003546498236
Merged-chr4-33243293-3	chr4	33243248	33243448	+	609.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5439.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	3.55790833531012	3.70704605450593	3.81856180979226	3.48096306064555	3.87076754535923	3.73206947607049	3.60075639796936	3.6667753019173	0.275894106696483	0.561250227693398	0.804900484135968
Merged-chr7-27552249-4	chr7	27552142	27552342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 1 of 13)	intron (NM_001317355, intron 1 of 13)	976.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	5.5596256439148	5.97247476053312	5.50307955866816	5.91233827946248	5.26801168401386	5.76457394235652	5.61375710135422	6.02147832744394	-0.129962570679563	0.669577678053241	0.86357079102718
Merged-chr16-76355458-4	chr16	76355342	76355542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	ID4_|SINE|ID	17607.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	5.31554638179097	5.24315372119732	5.6053925741306	5.73756305549378	5.64567444848907	5.64424439960379	5.52471066200971	5.72429150543442	0.216194301434242	0.449653815070072	0.734838914082714
Merged-chr10-21882207-2	chr10	21882107	21882307	+	814.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161845)	promoter-TSS (NM_001161845)	23.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	3.1535826834596	3.0875526939285	3.03717766305974	2.97811581656041	2.90417285029107	2.9468986152675	3.14156437880728	3.20680854684591	-0.0329974931793285	0.954428007767685	0.983764634562976
Merged-chr1-136636894-6	chr1	136636767	136636967	+	770.8229980000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	11966.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	3.84819068680983	3.83022919006387	3.79709169071166	3.78291157794156	3.8690154936061	3.74643401160885	3.92911425558923	4.11838610751719	0.312143498290467	0.47579760440767	0.752562056889328
Merged-chr3-94974661-4	chr3	94974576	94974776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293716)	promoter-TSS (NM_001293716)	-55.0	NM_001293715	107650.0	Mm.217222	NM_175356	ENSMUSG00000038861	Pi4kb	ESTM41|PI4K-beta|PI4Kbeta|Pik4cb	phosphatidylinositol 4-kinase beta	protein-coding	6.76552890738959	6.93697820379765	6.54434046297506	6.65458433096766	7.01386077372431	6.97207615875846	6.93282684515479	6.95069165972576	0.334026651222525	0.0943819857583911	0.33612994079664
Merged-chr3-55949349-4	chr3	55949265	55949465	+	837.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 33 of 57)	intron (NM_030595, intron 33 of 57)	102260.0	NR_033592	71182.0	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo	4.19408220843553	4.03163425302891	4.33748896425775	4.59177007242781	4.4108338042798	4.75203978004476	4.31822254436184	4.61643772163321	0.474123440291258	0.248895625435241	0.560095451132502
Merged-chr9-26962437-3	chr9	26962334	26962534	+	658.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37115.0	NM_025862	66948.0	Mm.289244	NM_025862	ENSMUSG00000031969	Acad8	2310016C19Rik|AI786953	acyl-Coenzyme A dehydrogenase family, member 8	protein-coding	2.94877941078714	3.00246364339594	3.36648483314054	3.01359298946612	2.7444207871655	2.85668747613455	2.87625041893425	2.74860742944364	-1.28849281552248	0.0436044264164408	0.212510747545077
Merged-chr10-96294911-4	chr10	96294821	96295021	+	793.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	68714.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	4.16730261923283	3.75914053627661	3.860535046356	4.0826106996195	3.87961166534468	3.56927519936631	3.98524757573533	3.75422204375887	-0.490813004918544	0.293454176773173	0.606008746948365
Merged-chr5-76142055-4	chr5	76141952	76142152	+	993.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020611, intron 1 of 5)	intron (NM_020611, intron 1 of 5)	1779.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	4.83667753995937	5.0942945494647	5.02842107481534	5.22617061171478	5.4809970870166	5.33647530667128	5.31485626070055	4.9520745563015	0.414470177983584	0.193333966652386	0.493529716199714
Merged-chr6-114250462-4	chr6	114250341	114250541	+	691.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172890)	TTS (NM_172890)	-32194.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	3.86026787729289	3.94575826027424	3.81093927714437	3.50075726543685	3.93151723658835	3.82399082006333	3.79515257669381	3.80873183822694	0.198414048910767	0.668988436793173	0.863357017638244
Merged-chr7-31089889-3	chr7	31089797	31089997	+	883.8777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-13200.0	NM_008557	17178.0	Mm.263847	NM_008557	ENSMUSG00000057092	Fxyd3	Mat8	FXYD domain-containing ion transport regulator 3	protein-coding	4.99549776884913	4.76302008715743	4.93580475274679	5.18657545715714	4.19073997736657	4.15592231803388	4.38409611580204	4.19872943473318	-1.70904733929687	6.81175546683725e-06	0.000195560166120199
Merged-chr17-83675610-4	chr17	83675498	83675698	+	938.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-30565.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	4.75117082069704	4.36055880202639	4.5516010947244	4.89095167331192	4.4725764046327	4.59419556361791	4.80069913922044	5.18257609364027	0.255248164891064	0.514892473976454	0.777296530332344
Merged-chr11-29986451-4	chr11	29986354	29986554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 2 of 41)	RLTR20C|LTR|ERVK	39579.0	NM_146016	237711.0	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	5.15610741436888	5.1757775782658	5.22222943424004	5.49193876319731	5.34642463237809	5.26443085298397	5.50299951141183	5.08479497937638	0.0435660536541601	0.885787452404424	0.957136688395769
Merged-chr16-33375633-4	chr16	33375507	33375707	+	866.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5129.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	4.43133897495054	4.4776250017916	4.4320521606549	4.02967626734088	3.91416176905907	4.43171286968087	4.52793593467429	4.54671702074109	0.0653615248219756	0.878827898619261	0.954708519232108
Merged-chr16-32803736-3	chr16	32803630	32803830	+	977.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6295.0	NM_001145874	224116.0	Mm.153301	NM_146071	ENSMUSG00000035638	Muc20	BC026367	mucin 20	protein-coding	3.67756573171589	3.99132162873428	4.17829962337183	4.22501487676976	3.52035774903033	3.48248028085397	3.66363141109779	3.43311077170159	-1.58578775207427	0.00165474407899039	0.0201856090485787
Merged-chr10-49049426-4	chr10	49049347	49049547	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	738490.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	6.27125179041513	6.1451241340695	6.64376103070181	6.35702640005662	5.00372792632601	5.51265656485044	4.94877438352672	5.17760408614835	-2.00722858844728	6.19521780443277e-12	5.80987362452859e-10
Merged-chr7-30956866-4	chr7	30956767	30956967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011680)	promoter-TSS (NM_011680)	-64.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	5.98116105381511	5.77407966498227	5.169946957426	5.69207521813008	5.93734954775474	5.95568229233658	5.82154855217447	5.99844546832142	0.391571895048985	0.16184261601664	0.450843453891688
Merged-chr13-23551647-4	chr13	23551529	23551729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175655)	promoter-TSS (NM_175655)	14.0	NM_175655	319157.0	Mm.442307	NM_175655	ENSMUSG00000069274	Hist1h4f	-	histone cluster 1, H4f	protein-coding	6.42305564383283	6.69913688922312	6.857432989325	6.65284376255392	6.51195770115611	6.80486401882814	6.96988164420165	6.62363313845633	0.0940071718380288	0.672366056792304	0.86513392426507
Merged-chr9-20961695-4	chr9	20961605	20961805	+	899.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1817.0	NM_001199432	13433.0	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	4.69499186029171	4.45591818579075	4.96133714403927	4.80373175407092	4.40142471666283	4.48917281245014	4.59797691373786	4.40367025818658	-0.596780095951905	0.102974839624392	0.352403774682658
Merged-chr5-122894956-4	chr5	122894874	122895074	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 12 of 22)	intron (NM_001003953, intron 12 of 22)	5376.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	5.49376715654263	5.03408176922881	5.01330470017752	5.52006205100158	4.91057991216385	5.15379754624063	5.02500444153148	5.46560845063175	-0.276038893173389	0.411906224087659	0.707250587970943
Merged-chr7-46833451-4	chr7	46833344	46833544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12360.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	6.33265312669451	6.24662294789203	6.76263821182789	7.20612114764102	6.15971464424718	6.09328663565033	6.4602134320482	6.55383644922314	-0.557865203092679	0.0550527914787322	0.245234535619543
Merged-chr16-44242780-4	chr16	44242601	44242801	+	964.792847	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198034, intron 24 of 24)	intron (NM_198034, intron 24 of 24)	69304.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	3.81817129854301	3.86139696785666	3.51011707269705	4.03307570942917	4.08159660026382	4.32498908769771	4.13787388993341	4.06651917190181	0.846394972614288	0.0655386004836599	0.272518521078772
Merged-chr3-133659995-4	chr3	133659902	133660102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115612.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	6.37029697078504	6.76897526436428	6.73532574691496	6.75513082967524	6.23725770711647	5.8374239180836	6.76746334128566	6.34838922019663	-0.483239599138315	0.0677484884802221	0.277812516507301
Merged-chr11-75137277-4	chr11	75137175	75137375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	30877.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	7.68519672056383	8.15844049106953	7.90409565089289	7.72650007658601	7.99497257447965	7.89752835668578	7.88013620027395	7.57508675874732	-0.0399568676886057	0.835712076462595	0.937516254002898
Merged-chr2-26493128-4	chr2	26493029	26493229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	10693.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	6.58896252888122	6.00841964043735	6.344408366197	6.2471343481016	6.25228165698879	6.50200552564955	6.51121270759498	6.30316650865593	0.128711034292433	0.589558171228527	0.820477868648093
Merged-chr4-134307745-4	chr4	134307630	134307830	+	965.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7390.0	NM_001039048	433766.0	Mm.331961	NM_001039048	ENSMUSG00000028834	Trim63	MuRF1|RF1|Rnf28	tripartite motif-containing 63	protein-coding	5.26817105668638	5.12688356819975	5.05287460914472	5.4438880175447	4.83499706297051	4.88702745827062	4.92399892172627	5.01534437638167	-0.644340217189092	0.0415883330944826	0.206528240905596
Merged-chr10-8848365-4	chr10	8848268	8848468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	37702.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	6.89429529788507	7.2957265088346	7.1261048370289	7.0157892770165	6.69492350903157	7.0040160061408	6.83368073788978	6.37063350910728	-0.486680312934178	0.0288338134373439	0.163136688160098
Merged-chr9-58269027-4	chr9	58268946	58269146	+	924.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	15882.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	4.1117938407068	3.90044686486925	4.02092077435926	3.6029706724483	4.32220961922231	4.23811972028959	3.74478393222454	3.8679785165986	0.433696635963526	0.358673591238149	0.664653538577493
Merged-chr2-181392756-3	chr2	181392625	181392825	+	831.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027656, intron 3 of 3)	intron (NM_027656, intron 3 of 3)	8475.0	NR_045164	329584.0	Mm.386906	NR_045164	ENSMUSG00000085028	Slc2a4rg-ps	C430010C01|Gm14462	Slc2a4 regulator, pseudogene	pseudo	3.85772465658197	3.65889401307337	3.53492447294454	3.38440256857553	3.83784681934868	3.65311658443244	3.79330802013582	4.15148272762783	0.787006988333277	0.104550965447046	0.355592181266975
Merged-chr13-46634264-4	chr13	46634154	46634354	+	916.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026056, intron 7 of 12)	intron (NM_026056, intron 7 of 12)	-35268.0	NM_001033192	97863.0	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding	5.12654117312223	4.64838706124859	4.52827090868157	4.94062146256359	5.23147950334514	4.66205199814543	5.00973759432731	5.09366791037791	0.369978228596784	0.30137876285747	0.613400404936288
Merged-chr7-72260981-3	chr7	72260944	72261144	+	829.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024703, intron 1 of 22)	Lx7|LINE|L1	45551.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	3.82749840038664	3.14427366701685	3.52807171751194	3.65543623118529	2.92555484629016	2.95495928246472	2.98768861896137	3.13270705012332	-2.27973512094597	0.000387378230889192	0.00626805980824319
Merged-chr19-9952528-4	chr19	9952421	9952621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-28079.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	6.80520725606456	6.74715148016659	6.56386914812716	6.59767105093832	6.73314382685383	6.8057296518369	6.79897626694712	6.9071867004519	0.188782450680273	0.345073405548401	0.653383164862993
Merged-chr1-55430453-4	chr1	55430359	55430559	+	903.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	24513.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	5.99962364597454	6.14596139133488	6.58966365083047	6.29646603470998	4.6910782151791	4.54011402556904	5.09539847010594	4.32775955217753	-2.8607506216557	1.69883217681608e-15	2.9710362534052e-13
Merged-chr11-75630884-4	chr11	75630792	75630992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008916)	promoter-TSS (NM_008916)	-128.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	8.25822593897976	8.67822156566235	8.46172037382109	8.19017340631611	8.61151619248713	8.56684362352968	8.74835692224049	8.30070555197467	0.200927798369167	0.274802602748167	0.586564742286016
Merged-chr19-60663208-4	chr19	60663107	60663307	+	958.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-82184.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	5.21243489292605	5.57686493870884	5.27425304702736	5.62888132483459	5.05332896644307	4.90887910489097	4.91227029025121	5.00747026535944	-0.885267782151482	0.00440884400251982	0.0432552870096979
Merged-chr2-48270512-4	chr2	48270413	48270613	+	986.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-543596.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	4.01879574114882	4.35156886181543	4.4660313919907	4.7149028198666	4.48915702489862	4.20355315491907	4.74113717209375	4.82580645041302	0.354054638217414	0.405033597205763	0.702072044016876
Merged-chr10-60391241-4	chr10	60391225	60391425	+	907.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 30 of 68)	intron (NM_001252635, intron 30 of 68)	-8401.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	3.90864695533423	3.75318446330151	3.81144577733482	4.16102131240205	3.44331162049637	3.70796772090831	3.74449445121171	3.95298992967719	-0.622058572893502	0.201235202540809	0.503556256669362
Merged-chr1-119893176-4	chr1	119893086	119893286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER30|DNA|hAT-Charlie	19982.0	NM_175106	66343.0	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	4.97490830072969	5.17961225704806	5.13852854602479	5.15771531842867	5.3068891495137	4.75281008285219	4.95169590006446	4.41850787259879	-0.39066967089557	0.286711867758618	0.598418439292458
Merged-chr11-106687536-3	chr11	106687437	106687637	+	760.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 6 of 14)	intron (NM_001305158, intron 6 of 14)	27744.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	3.21368895723064	3.21133143817116	3.3288323739016	3.31098260150441	3.40814067989281	3.12855404518073	3.26069365271883	3.43174715200388	0.175552698319742	0.74140977810515	0.898179889473609
Merged-chr9-40756598-4	chr9	40756515	40756715	+	862.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-44658.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.05333645029336	3.96154483998783	3.44878452004063	3.67936655057479	4.02683906030194	4.03700458025023	3.89794456527691	4.00671017673624	0.536913461298976	0.246809056571929	0.558074330116374
Merged-chr6-108307424-4	chr6	108307308	108307508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	94312.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	6.75220426976992	6.81533649235347	6.31548556727321	6.69932841249826	6.41912313620546	6.54933519103855	6.37615509243139	6.34915432492055	-0.35083393784253	0.114877547554049	0.375085731988516
Merged-chr16-30873701-4	chr16	30873599	30873799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	207733.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	5.31715417599797	5.46895592446375	4.94219247365264	5.33777705818946	5.20549731880072	5.23311973665139	5.40396612010552	5.4001061114136	0.0392354001305044	0.895919128942267	0.960979922829742
Merged-chr13-23833235-2	chr13	23833135	23833335	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6199.0	NM_001164743	105355.0	Mm.27038	NM_134069	ENSMUSG00000036083	Slc17a3	AW261723|Npt4	solute carrier family 17 (sodium phosphate), member 3	protein-coding	3.1889912362495	3.0201244469423	2.88770097523054	2.8610485214433	3.02281233192522	3.24633297697704	3.00610600219377	3.01538085544556	0.353560913287886	0.544323456409007	0.795184841840149
Merged-chr5-125364094-4	chr5	125364000	125364200	+	991.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23006.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	5.5187618517258	5.08249935888543	5.94576356761018	6.29933183886403	4.96452531280628	5.1793092714471	5.40915226959797	5.43237858266798	-0.980941014292072	0.00869679522928358	0.0713907493513062
Merged-chr7-4504906-4	chr7	4504801	4505001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360154, intron 12 of 12)	intron (NM_001360154, intron 12 of 12)	-3221.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	6.74021478768878	6.73713358548329	6.77084607267236	6.71685960342776	7.0591875303352	6.94755420494733	7.04327418076405	6.86392635558977	0.344808316478105	0.0704583511112487	0.284450965557686
Merged-chr4-16082373-4	chr4	16082302	16082502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-68514.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	5.53753505064991	5.53045630497439	5.80517708389276	5.91691176498482	5.54902678202002	5.51066899903864	5.20946475081853	5.12461424886707	-0.603652521922457	0.0410251577990548	0.204863877296122
Merged-chr1-181125343-4	chr1	181125245	181125445	+	715.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026171, intron 10 of 22)	ORR1D1|LTR|ERVL-MaLR	18859.0	NM_026171	67459.0	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	3.70292474687689	3.78027422479575	3.47206048287844	3.55706230396607	4.03094607236974	3.76742018186049	3.57934449456661	3.94190390960296	0.6475639334651	0.171909052658603	0.465135304640845
Merged-chr15-101078360-2	chr15	101078260	101078460	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-23961.0	NM_001214911	668225.0	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	3.7442838665594	4.04766602647751	3.46131492253141	3.57759766087986	3.6681526374485	3.63963162800853	3.77864521865141	3.79253639191013	-0.0112652305446283	0.981593721508288	0.993444886661864
Merged-chr16-10990109-4	chr16	10989988	10990188	+	990.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	B3A|SINE|B2	3033.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	5.34954654118184	5.20135787913448	4.84568486291229	4.92540295943137	5.32894402118126	5.06490789963761	5.26724621022448	5.42727336307258	0.365037245873305	0.244713802326012	0.555808536831526
Merged-chr15-59056655-4	chr15	59056551	59056751	+	854.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 2 of 14)	intron (NM_144800, intron 2 of 14)	25375.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	4.80209068992349	4.34232877638812	4.93529920021677	5.01741820055502	4.71910588534039	4.47630914869131	4.671400467264	4.34348710924084	-0.511279685029015	0.186707000821387	0.484739481013477
Merged-chr2-4573499-4	chr2	4573411	4573611	+	958.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 3 of 11)	MTD|LTR|ERVL-MaLR	13757.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	4.67065236460744	4.31117844476895	4.86467661027706	5.25914653514546	5.03545045367036	4.62622556258169	5.09767236274997	4.8614100263646	0.15813306814924	0.693549345687602	0.875394975913638
Merged-chr19-55227283-4	chr19	55227165	55227365	+	981.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 8 of 20)	intron (NM_001081076, intron 8 of 20)	13971.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	5.42738927704203	5.31855663836274	4.97674341109778	5.14409777724639	5.30551693225085	5.6270678534834	5.02753722994877	5.42451168380759	0.246579858659398	0.428290440564878	0.719325810566156
Merged-chr11-94385848-2	chr11	94385748	94385948	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	7128.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	3.06253072906763	2.85075999443536	3.23519767873898	2.95842000485627	3.0976180174539	3.17353172647919	3.11115414081309	3.23333143279986	0.504476166965437	0.375199005630005	0.678237759593106
Merged-chr9-60492427-4	chr9	60492315	60492515	+	977.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040426, intron 2 of 17)	CT-rich|Low_complexity|Low_complexity	18620.0	NM_001040426	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	5.30596954807303	5.34229416128652	4.91090084115608	5.17990336306765	5.26088406778533	5.16173411864718	4.84894042523971	5.15304537609589	-0.141043431222385	0.654369681208559	0.855619882409832
Merged-chr9-118610763-4	chr9	118610656	118610856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	4047.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.94336632223595	5.47478533249943	5.0904152893676	5.05144446282309	5.24852060395709	5.15988383322018	5.59054311669794	5.15422512567678	0.268395375525762	0.399753813866742	0.697861775510926
Merged-chr12-16904100-3	chr12	16903999	16904199	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	ORR1D2|LTR|ERVL-MaLR	9121.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	3.37995506745198	3.20221984582585	3.10894925272478	3.25706097294572	3.17061551863349	2.94783274631758	2.90559786667424	3.22287593695962	-0.660707475733661	0.257797523177326	0.569638652166482
Merged-chr2-90847144-4	chr2	90847052	90847252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317241)	promoter-TSS (NM_001317241)	-3.0	NM_001317241	56428.0	Mm.28023	NM_019758	ENSMUSG00000027282	Mtch2	2310034D24Rik|4930539J07Rik|HSPC032	mitochondrial carrier 2	protein-coding	7.63240424771937	8.39349465742765	7.9045082265495	7.61365557685295	7.92482256722615	8.08178423816731	7.97638090643839	7.79425620342832	0.0284059905205341	0.897029242803317	0.9615041483224
Merged-chr12-55863182-3	chr12	55863064	55863264	+	914.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001037756, exon 8 of 10)	exon (NM_001037756, exon 8 of 10)	26798.0	NR_155205	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	3.67835780418897	3.64213082857097	3.37185354623565	3.43484059043429	3.57956711615841	3.29704309510256	3.10862438632344	3.24919708095529	-0.70639111197661	0.203895246692915	0.506971033093059
Merged-chr2-128124158-4	chr2	128124043	128124243	+	924.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028765)	TTS (NM_028765)	-1895.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	4.36393505458481	4.71245748547342	4.22743115800936	4.32298221861409	4.58648734312489	4.25315770412973	4.11038869009206	4.44567771281577	-0.111458904971408	0.783496963845509	0.915649203519514
Merged-chr11-50431625-4	chr11	50431501	50431701	+	810.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172557)	promoter-TSS (NM_172557)	-490.0	NM_172557	216724.0	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding	3.7032598096994	3.64867262146176	4.02286077454096	3.27850972153779	3.50986070296207	3.5325277146504	3.68820528656084	3.84805536666624	-0.0931454576530392	0.859536589213304	0.946868401331194
Merged-chr4-16101580-4	chr4	16101522	16101722	+	846.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62021.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	4.00849483749509	3.80315957859393	4.9087323551635	4.95805413618569	3.72002958497092	4.13720339134598	3.93757768888766	4.11070654127379	-1.31911335135105	0.0124070196541782	0.091953274881794
Merged-chr3-87566724-2	chr3	87566618	87566818	+	837.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	41140.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	2.91011197490641	2.7672148158132	2.98624718588033	2.97642122441963	3.73829563685802	3.59952820791271	3.30107538232896	3.83234719731244	2.65901699222242	2.36418514914821e-05	0.000591079503797755
Merged-chr5-115336909-4	chr5	115336780	115336980	+	909.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029645, intron 1 of 2)	B1_Mus1|SINE|Alu	4281.0	NM_029645	384281.0	Mm.229308	NM_029645	ENSMUSG00000029536	Gatc	2010003O18Rik	glutamyl-tRNA(Gln) amidotransferase, subunit C	protein-coding	3.61153901862956	3.6640349755168	3.77017443126769	3.21181430755685	3.91722373103245	3.48298284465509	3.84834767112281	3.90844926516972	0.718475471395929	0.160124245183055	0.448031905652136
Merged-chr3-9249906-4	chr3	9249817	9250017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177660)	promoter-TSS (NM_177660)	-650.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	7.95016760263131	8.1096103951733	8.01641645530251	7.64534319489422	7.52630004323731	7.22093669505648	7.61408020600736	7.31906082402393	-0.657745192613359	0.00081073825108938	0.0113597515697423
Merged-chr10-117436926-3	chr10	117436853	117437053	+	671.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10482.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	2.94565373344492	3.09838172046366	3.01807403869806	2.70714643439376	3.21378940223705	3.5047551247449	3.6539757154789	3.53475747399851	2.12257951199534	0.000259312388018458	0.00450295107752277
Merged-chr8-24420553-4	chr8	24420454	24420654	+	821.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18392.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	4.02518052601473	4.17275686965617	4.02576915947227	4.10041577212191	3.93238490099605	4.09888846328138	3.85630584821096	4.24500173902716	-0.127151494949578	0.762444205652968	0.906949030953117
Merged-chr8-73849965-3	chr8	73849857	73850057	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-496417.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	5.15265882663387	5.1662641581732	5.5480527371282	6.05048394497298	4.1738258495573	4.20976141368225	4.60688793473741	4.6256327191523	-2.30309938702326	1.83407272434575e-08	9.27842661309213e-07
Merged-chr2-34646456-4	chr2	34646360	34646560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	108772.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	5.58629777894993	5.67408588838931	5.27189502577694	5.29816379495477	5.39084785823556	5.57057488107328	5.5590056161687	5.30036072593659	-0.00813983566221879	0.977469289083361	0.991888117862217
Merged-chr12-54656630-4	chr12	54656512	54656712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134054)	promoter-TSS (NM_134054)	-40.0	NM_134054	104725.0	Mm.485026	NM_134054	ENSMUSG00000044408	Sptssa	1110002B05Rik|AA407909|AA409588|AU041967|Ssspta	serine palmitoyltransferase, small subunit A	protein-coding	8.64492728537229	8.78581716045993	8.72136796415558	8.94380692952153	8.72146825075707	8.74896652998388	9.03349145180858	8.6942279060615	0.0276940460734821	0.863746296965204	0.948812409760272
Merged-chr10-21566294-4	chr10	21566201	21566401	+	903.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26844.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	4.43703113409938	4.40700081536148	4.24394386123731	4.29042479080726	4.78015838109637	4.77937850217382	4.80034860389659	4.88551779638859	1.02777066589173	0.00288925616055151	0.0310609219531635
Merged-chr9-55307281-1	chr9	55307181	55307381	+	653.0	f0_balb.idr	Intergenic	Intergenic	-19632.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	3.08103548446344	2.76458219064659	2.97480375596629	2.9483788622753	2.7382136047664	2.69172336267593	2.78641439300552	2.65990458865149	-1.06944321248358	0.0976934438691681	0.342534890532801
Merged-chr16-14378812-4	chr16	14378688	14378888	+	964.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008576, intron 1 of 30)	intron (NM_008576, intron 1 of 30)	17230.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	4.44413789920692	4.36191033241553	4.07099920500867	4.30796984311225	4.58286581233301	4.30118792888347	4.46391446943374	4.44198829533211	0.360236131478868	0.342925800495007	0.6516462545027
Merged-chr16-30722531-4	chr16	30722430	30722630	+	922.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122807.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	4.50506620235584	4.23792068594513	4.65889394347666	4.93827957829353	4.28846810915116	4.50720815396854	4.5246118077269	4.12865979738495	-0.583243575554801	0.15535078845583	0.440979076070846
Merged-chr8-94167434-4	chr8	94167352	94167552	+	903.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1|LTR|ERVL-MaLR	-5166.0	NM_008630	17750.0	Mm.147226	NM_008630	ENSMUSG00000031762	Mt2	AA409533|MT-II|Mt-2	metallothionein 2	protein-coding	4.02611649835408	3.91121164255025	3.75606008469523	3.92673683235701	4.44023521048182	4.10047233253865	3.90903698903909	4.40181788201611	0.852551065361971	0.0486057352788167	0.227597370660541
Merged-chr2-91475910-3	chr2	91475816	91476016	+	842.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 8 of 37)	intron (NM_172668, intron 8 of 37)	18385.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	3.39280606508799	3.44029184597991	3.28264532508795	3.51266153472672	3.1132483034277	3.06469331519155	3.1512267923372	3.4431682700782	-0.801614755459241	0.148357950773425	0.430071295027352
Merged-chr10-53928104-4	chr10	53928018	53928218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 8 of 12)	intron (NM_008548, intron 8 of 12)	147678.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	7.41913485563328	7.29711164059927	7.53838773148583	7.92122800119894	6.45538943222786	7.15876484922512	7.18885158021529	7.39607954714665	-0.653823720212528	0.0107555815753441	0.0832769959159245
Merged-chr17-65785898-2	chr17	65785774	65785974	+	750.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_152099, intron 2 of 20)	RLTR13D2|LTR|ERVK	2519.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	2.98581484633398	3.16293666551156	3.23182763123999	2.88967906806535	3.37179745817497	3.22581848915844	3.16266945469572	3.23004798195209	0.737300487694361	0.188140677606183	0.486704171954588
Merged-chr12-110608966-4	chr12	110608897	110609097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030238, intron 1 of 76)	intron (NM_030238, intron 1 of 76)	7602.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	6.01555196652606	5.73147029341455	5.69415200646335	5.78441207649047	5.75829168491134	5.61287844665116	6.15538169467092	5.86150426386124	0.0850622188156582	0.74826006335629	0.900930235736524
Merged-chr5-105616818-4	chr5	105616703	105616903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83166.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	6.5520000202083	6.32862271429201	6.01602678394781	6.3650174147512	6.59756435713575	6.37168280198926	6.91559403162199	6.16864629088398	0.318088328945676	0.217260556123741	0.524109981845447
Merged-chr6-124957530-4	chr6	124957415	124957615	+	970.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164089)	TTS (NM_001164089)	8023.0	NM_012003	26894.0	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e|SGN7a	COP9 signalosome subunit 7A	protein-coding	5.48584834060762	5.00473691183953	4.98920418169121	4.54347978243448	5.34023097006991	5.01606627752307	5.00010639530257	5.27312954948743	0.261699715897446	0.472494353400292	0.750655344998429
Merged-chr4-43010280-4	chr4	43010151	43010351	+	962.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163233)	promoter-TSS (NM_001163233)	50.0	NM_001163233	60534.0	Mm.23122	NM_053081	ENSMUSG00000028453	Fancg	AU041407|Xrcc9	Fanconi anemia, complementation group G	protein-coding	4.62097012551164	4.38289393177923	4.17673841387083	4.19357442479538	4.35017453001212	4.14738174720751	4.41796182506303	4.07382193940111	-0.210834608738943	0.604713088837286	0.828509474255204
Merged-chr13-103897800-4	chr13	103897696	103897896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	22790.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	5.72938540830551	5.8855782425949	5.7044653190461	5.76282068185844	6.07965505258645	6.02721306320156	5.82285043421464	5.80100720460684	0.275162333422514	0.267484950930187	0.579177784876944
Merged-chr15-9428074-4	chr15	9427968	9428168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7960.0	NM_029341	75568.0	Mm.82143	NM_029341	ENSMUSG00000039676	Capsl	1700028N11Rik|AW125205	calcyphosine-like	protein-coding	6.77064387929355	6.82350867223646	7.27299728034822	7.29613976181347	6.92911994826604	7.0220403105027	6.9311206557834	7.04838066097559	-0.128134471217749	0.554797309137561	0.80104502550007
Merged-chr5-112973793-4	chr5	112973697	112973897	+	845.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 2 of 20)	intron (NM_001285806, intron 2 of 20)	41741.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	4.19001123973101	4.24092150286479	4.19064579772443	4.23611156732149	4.146401123643	4.1202832124635	4.08055429893891	4.14255480142183	-0.238151791057727	0.54541598828773	0.795911485069713
Merged-chr5-118473723-3	chr5	118473626	118473826	+	677.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86993.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	3.36264371521147	3.625312474875	3.64203019994769	3.23673487520489	2.97656551673822	3.17501026264359	2.92259301212309	3.12945322204238	-1.74421128693165	0.00427660015931187	0.0422607417381174
Merged-chr6-48395759-5	chr6	48395633	48395833	+	837.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152251)	promoter-TSS (NR_152251)	147.0	NM_001362144	77827.0	Mm.107646	NM_133922	ENSMUSG00000042810	Krba1	A930040G15Rik|AI448780	KRAB-A domain containing 1	protein-coding	3.4284383790173	3.25385539976222	3.67041225759524	3.29282501994484	3.3974472987998	3.17230182944683	3.30535354010762	3.25668659251155	-0.441428037275602	0.416517529809724	0.710574533334763
Merged-chr10-22141077-4	chr10	22141028	22141228	+	771.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254744, intron 1 of 1)	MuRRS-int|LTR|ERV1	8142.0	NM_001254744	319887.0	Mm.177746	NM_001254744	ENSMUSG00000097327	E030030I06Rik	-	RIKEN cDNA E030030I06 gene	protein-coding	3.57255117525099	3.66314342076112	3.69501245550579	3.84594419987577	3.87911428323103	4.45768575541206	4.03232823026116	3.90770305341411	1.03405339936858	0.0284932032081663	0.161952560144089
Merged-chr8-124793406-3	chr8	124793274	124793474	+	836.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_198632, exon 1 of 10)	5' UTR (NM_198632, exon 1 of 10)	355.0	NM_198632	330863.0	Mm.422769	NM_198632	ENSMUSG00000036913	Trim67	D130049O21Rik|TNL	tripartite motif-containing 67	protein-coding	4.04221828483737	3.79175376459424	3.8721600700766	3.84018597953599	3.40000143105032	3.35033850622362	3.4297163978162	3.77490886359884	-1.23717729670187	0.014216255540872	0.101028240130165
Merged-chr5-35689010-4	chr5	35688866	35689066	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-9186.0	NM_030127	78558.0	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	3.9869783730266	3.95558809155976	4.08102785195378	4.10093359706333	3.89819826365611	3.83838255337626	3.92191236717025	4.20676654511699	-0.174150812189446	0.683922573884792	0.870489884572853
Merged-chr5-117872341-4	chr5	117872258	117872458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 1 of 27)	intron (NM_008712, intron 1 of 27)	5519.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	6.77892924047214	6.99593538173374	6.78012150369065	6.53720100560124	7.13280405051813	7.24155520844593	7.07523647381446	6.58727721730829	0.361491774273899	0.115358252716943	0.375741777794321
Merged-chr16-45174056-4	chr16	45173959	45174159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356366, intron 4 of 10)	Lx8|LINE|L1	15230.0	NM_026402	67841.0	Mm.41775	NM_026402	ENSMUSG00000022663	Atg3	2610016C12Rik|APG3|Apg3l|Atg3l|PC3-96	autophagy related 3	protein-coding	7.31514491549629	7.23892221873111	7.49926346694478	7.80893857925794	7.20160615011217	6.8461638624762	7.54001037969642	7.08485734973129	-0.402251007839107	0.0809505427495994	0.308688454000521
Merged-chr7-143041695-4	chr7	143041610	143041810	+	921.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 2 of 4)	intron (NR_110355, intron 2 of 4)	-11040.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	4.89418413162583	4.6760704745542	4.67335258556442	4.83336408224318	4.48363188479801	4.72331027299133	4.90440274256238	4.95761022705376	-0.0103476578152136	0.97631659267019	0.991528225629167
Merged-chr9-104569613-4	chr9	104569516	104569716	+	824.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028719, exon 1 of 16)	5' UTR (NM_028719, exon 1 of 16)	133.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	5.4401071304498	4.86537270943652	4.79652633727076	5.37209030810199	4.75420879233434	4.53068953950829	4.61250894807405	4.44536775638759	-1.14085013289536	0.00221656779275101	0.0253084823420314
Merged-chr14-121405380-4	chr14	121405284	121405484	+	862.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26154.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	3.85759946285385	4.22501238340177	3.74417963307521	4.01132702253985	4.24090784554882	3.97908636878824	4.13164657313125	4.10340991734075	0.376856300734966	0.383449961430777	0.685337973752198
Merged-chr9-57504009-3	chr9	57503935	57504135	+	872.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133982)	promoter-TSS (NM_133982)	-67.0	NM_133982	102614.0	Mm.274421	NM_133982	ENSMUSG00000062309	Rpp25	AI851155	ribonuclease P/MRP 25 subunit	protein-coding	3.26776420115385	3.5022911056045	3.20941318778353	3.43398448660784	3.29339753007046	3.25747735118597	3.07395297250237	3.20784844269813	-0.560027276856666	0.306274307725265	0.618740646335478
Merged-chr1-151343200-4	chr1	151343104	151343304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1282.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	5.52387660818056	5.38814901639887	5.67644794575898	5.47578848777127	5.33369247966046	5.49667489675687	5.49710444133789	5.54758211964768	-0.0867003077435158	0.750797890389772	0.901855648088396
Merged-chr2-32607846-4	chr2	32607749	32607949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025310, intron 1 of 5)	intron (NM_001025310, intron 1 of 5)	864.0	NR_110347	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	6.12496171100052	6.3721277654563	6.14735433866281	6.07789774541089	6.46136093870333	6.62207832360705	6.34581889695427	6.56894383284188	0.478554234976864	0.0319214103376912	0.17445746824528
Merged-chr10-37236696-2	chr10	37236596	37236796	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97770.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	3.26360350224461	3.18754257233699	3.26406469804635	3.18486761905861	3.1255801352505	3.00420613589529	2.74215984807552	3.26219952130257	-0.692615032766001	0.254412616557379	0.56577734976529
Merged-chr13-54057129-3	chr13	54057036	54057236	+	647.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1478.0	NM_010076	13488.0	Mm.54161	NM_010076	ENSMUSG00000021478	Drd1	C030036C15Rik|Drd-1|Drd1a|Gpcr15	dopamine receptor D1	protein-coding	2.65004761931743	2.5888746344315	2.88873135091911	2.36883450137746	3.81911707336877	3.50200724700196	3.4127240226281	3.15396240632515	4.34485360557195	5.31067651988832e-09	2.96943161044093e-07
Merged-chr10-80167667-4	chr10	80167560	80167760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007705)	promoter-TSS (NM_007705)	-179.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	8.52850852365604	8.88943463543759	8.55866907278714	8.23127757271862	8.70500934603995	8.83695824847052	8.4208007599036	8.53885558896466	0.0826099712663948	0.667991323345417	0.862827176793878
Merged-chr11-120748286-4	chr11	120748180	120748380	+	936.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-16259.0	NM_007621	12409.0	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	5.22761956283997	4.62225614785525	4.69023606313564	4.2772841231828	4.8045760796798	4.69996906477587	4.85007092294428	4.6470859028297	0.038969878312506	0.921631114885989	0.9709178534782
Merged-chr9-44479054-8	chr9	44478845	44479045	+	788.697937	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3880.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	4.11825162687879	3.51894438807595	3.76033225850957	3.56259362969258	3.42580641308928	3.82829910934974	4.01933090678725	3.65043218334844	-0.0268076596304618	0.958600752875555	0.985248919859626
Merged-chr1-127975774-4	chr1	127975662	127975862	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 13 of 20)	intron (NM_001285945, intron 13 of 20)	106989.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	5.45953318813038	4.92399566572836	5.43309239761703	5.41046958030017	5.18338232935103	5.4303207962775	5.37802508318661	5.58514231279871	0.122796352809706	0.689001979402366	0.873078401014891
Merged-chr2-164458539-4	chr2	164458439	164458639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-2432.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	6.79539277411476	7.20718710552527	6.91430816087203	5.91370348014395	6.63714542533451	6.78148035805356	6.40041696482021	6.6919264312973	-0.212096566615011	0.479793085390119	0.755490488120151
Merged-chr1-179546308-4	chr1	179546166	179546366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146105)	promoter-TSS (NM_146105)	10.0	NM_001331054	15278.0	Mm.293529	NM_008249	ENSMUSG00000026492	Tfb2m	Hkp1	transcription factor B2, mitochondrial	protein-coding	8.12351667095846	8.48951204602304	8.37383882400335	8.23047767246954	8.52233707966775	8.40941668972465	8.74269166294864	8.55744956209027	0.319605478646559	0.0546311970511281	0.244047928702865
Merged-chr4-40134908-4	chr4	40134785	40134985	+	802.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8380.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	3.8302615010022	4.04704869077189	4.38496676815166	3.76119899579209	4.36788945520004	3.95312200209594	4.02574984400201	4.30495462438734	0.421598048011965	0.352200670429811	0.659353818166894
Merged-chr4-133633150-2	chr4	133633050	133633250	+	788.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001017968, exon 1 of 8)	exon (NM_001017968, exon 1 of 8)	279.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	3.59733479557638	3.17916753675606	3.40658475662292	3.09924306094278	3.23861952115625	2.85892245341213	3.28574849179175	3.29693932628837	-0.540359220182445	0.371412646459503	0.675446164536008
Merged-chr17-10335201-5	chr17	10335083	10335283	+	971.338074	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10581.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	4.50931623950724	5.2694270347253	4.59000812063478	4.42642668706863	4.55147573967823	4.36570003632015	4.05754943037414	4.07157033178538	-1.0333649536473	0.0216524706026442	0.134939149357779
Merged-chr4-126883748-4	chr4	126883636	126883836	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114399, intron 23 of 29)	intron (NM_001114399, intron 23 of 29)	84187.0	NM_001357201	67785.0	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	4.51208925469743	4.20405541627676	4.55396613260365	4.61833124136809	4.60900884297885	4.46285107071989	4.68394856960474	4.80650111975651	0.344549224287024	0.349510723673645	0.657031053252862
Merged-chr15-88828421-3	chr15	88828322	88828522	+	841.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8776.0	NM_029720	76737.0	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	3.01877219894011	3.28311147330749	3.01909086799175	3.07890049361638	3.54101915693449	3.19416759043811	3.19400841330617	3.2609221508478	0.781508339676987	0.161846172378983	0.450843453891688
Merged-chr9-13653195-2	chr9	13653095	13653295	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013813, intron 1 of 3)	intron (NM_001013813, intron 1 of 3)	-9265.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	3.03483573777155	3.03789836948238	2.90729469726649	2.92224784844031	3.26947250725367	3.2050179219784	3.02447259786951	3.03370580567539	0.682857831164159	0.22817707462593	0.537048343191558
Merged-chr3-146177931-4	chr3	146177853	146178053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 7 of 13)	intron (NM_001005846, intron 7 of 13)	27779.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	5.22014718395826	5.00835221925011	4.95690277557868	5.00634530275103	4.97200754418498	5.39282132706026	4.81928487733689	5.33115013467931	0.180392566218968	0.57911169141006	0.815233759185512
Merged-chr5-30814614-4	chr5	30814515	30814715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133350)	promoter-TSS (NM_133350)	-26.0	NM_133350	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	6.42170484864918	6.16386258525461	6.01778848942881	5.73495687719473	6.37949766528196	6.36375940133243	6.33968064819939	6.3678091470572	0.417738523024285	0.0969519522683628	0.341129187855191
Merged-chr11-17257608-4	chr11	17257492	17257692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330649)	promoter-TSS (NM_001330649)	45.0	NM_020558	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	7.11372921931646	6.99129355548573	7.06705555748703	6.9488568826136	7.51351041176454	7.25614683969383	7.15856975713081	7.1099660784317	0.345114711209404	0.0760712099025287	0.2978645095615
Merged-chr13-9330853-3	chr13	9330743	9330943	+	957.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	54318.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	4.06774160439165	3.94011457477194	3.72306500665328	4.17540939470469	3.79439883715457	3.89662335536119	3.65315598249797	4.06584459780124	-0.396058726286116	0.390568647442965	0.69058015678842
Merged-chr2-84800518-4	chr2	84800427	84800627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019949, intron 1 of 3)	intron (NM_019949, intron 1 of 3)	1699.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	5.81046375798925	6.63544681756546	5.67365975941243	5.9058970905322	6.56812324827736	6.56470529988998	5.97455795545239	5.90786100181115	0.346452918338188	0.283758380793342	0.595814772571451
Merged-chr12-84023272-4	chr12	84023181	84023381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	13779.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	7.06228450285667	7.3971777171538	7.24658121091272	6.95101881859881	7.16191329825199	7.2158244487525	6.99058427361647	7.38223788387952	0.0349897806662535	0.864414683510313	0.949157299111141
Merged-chr8-115555654-4	chr8	115555551	115555751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	151243.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	6.51892226249492	6.09985953832314	6.55133311851979	6.69475091798545	6.29285498835795	5.79555424536075	6.47082524182179	6.48337120552292	-0.295740998485874	0.26472135941733	0.576566406596513
Merged-chr17-65783786-4	chr17	65783679	65783879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152099, intron 2 of 20)	CpG-6545	424.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	4.97476356977331	5.33972825707753	5.3136299379924	5.27519022170309	4.94256064909943	5.36419288020632	5.59861569340767	5.42337061859013	0.191905054159159	0.546437866983689	0.796373892998199
Merged-chr14-78849767-4	chr14	78849693	78849893	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027906, intron 1 of 44)	intron (NM_027906, intron 1 of 44)	615.0	NM_173758	219189.0	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding	4.54868068498878	4.34953611518973	4.78583686557531	4.58550172738719	4.24690956862123	3.94182128952922	4.23909060009856	4.1068409569174	-1.0316387598199	0.0107607914811235	0.0832998778504501
Merged-chr4-137764277-3	chr4	137764166	137764366	+	801.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007431, intron 1 of 11)	intron (NM_007431, intron 1 of 11)	2209.0	NM_001287172	11647.0	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	2.82518286936163	2.40895209727026	2.61671706197405	2.33333207036708	3.41197494825911	3.0020227399193	2.81487785275975	2.88698743425751	2.43960498559515	0.000821446498020449	0.011484922467609
Merged-chr3-144704147-4	chr3	144704041	144704241	+	977.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 5 of 10)	intron (NM_001282037, intron 5 of 10)	16194.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	5.11520155866747	4.88058018058618	4.65110729631637	5.06358873526632	5.25945892373883	4.19861727283639	5.11989654775282	4.77119660306244	-0.0687675813670223	0.867244313179377	0.950313421774078
Merged-chr8-109751890-2	chr8	109751790	109751990	+	710.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14151.0	NM_001080930	52335.0	Mm.276770	NM_001080930	ENSMUSG00000069895	Atxn1l	AW558552|Boat|C330011L24Rik|D6Mgi37|D8Ertd587e	ataxin 1-like	protein-coding	3.13337123156234	2.85674323793678	2.62075870904405	2.56712994411423	2.73371444243923	2.94777859386339	3.31348778658596	2.9002191390272	0.773630548651326	0.25356706869836	0.564890375536131
Merged-chr12-3236859-4	chr12	3236751	3236951	+	975.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015551, intron 1 of 6)	intron (NR_015551, intron 1 of 6)	1060.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	4.35245815660929	4.52610030252121	4.04793802195726	4.30611599018266	4.6719874795225	3.9910818024122	4.54071097141617	5.03451664959825	0.659735907967045	0.132497579094784	0.405392244772508
Merged-chr2-167269977-3	chr2	167269897	167270097	+	602.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-29460.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	3.32186434759626	3.20422998479642	3.20681080624522	3.17610897864687	3.37608134583713	3.31775296777865	3.41369912605202	3.20524190367357	0.40144835227185	0.442358355202962	0.729076466644861
Merged-chr12-79093403-2	chr12	79093303	79093503	+	751.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_110486, intron 2 of 2)	L2|LINE|L2	-3733.0	NM_029988	110417.0	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	3.20294707933614	3.19081851833631	3.14347473482624	3.33126614665682	2.84170402838179	3.25502056164441	3.13229635323026	3.46468682383718	-0.132587792485206	0.82287668579162	0.932185203682946
Merged-chr11-105567401-4	chr11	105567271	105567471	+	892.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22615.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	3.82293422813037	3.94785834124392	3.92988360502758	4.36261168766565	3.46702896612349	4.05317460745692	4.33855188402114	3.97763897171725	-0.131138360494366	0.797186581854788	0.92154064556212
Merged-chr11-69415141-4	chr11	69415129	69415329	+	924.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1554.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	3.5032500761367	3.42527176253285	3.61140388501049	3.20866976459436	3.48765108096927	3.62093588956414	3.48995142127323	3.84391208372658	0.603757370050135	0.235394384793452	0.545414613125427
Merged-chr8-14824655-3	chr8	14824559	14824759	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 11 of 15)	intron (NM_172910, intron 11 of 15)	-63877.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.63101134323978	3.37184296376455	3.9573926373821	3.45371946459669	4.96372546592451	4.69999736317171	4.9723076850387	4.69949323104746	3.12812834151864	9.01301668850312e-13	9.67628227558015e-11
Merged-chr7-16314083-4	chr7	16313996	16314196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133234, intron 3 of 3)	intron (NM_133234, intron 3 of 3)	4513.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	7.2961676858447	7.60539071796677	6.92716748521421	7.25913696562716	7.65357622965523	7.49589925652201	7.49367300658641	7.49874734210598	0.324612041502324	0.108631332618046	0.363854389177915
Merged-chr11-95354301-4	chr11	95354212	95354412	+	935.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172543, intron 1 of 7)	intron (NM_172543, intron 1 of 7)	17294.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	4.53251997877275	4.64298753062679	4.20109964818964	4.40982353220453	4.89579310974092	4.70696318482142	4.55333296525113	4.79399044106269	0.638965472854614	0.0769845258863067	0.299988983705617
Merged-chr7-118646482-4	chr7	118646388	118646588	+	761.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028930, intron 5 of 17)	ORR1G|LTR|ERVL-MaLR	12752.0	NM_028930	74424.0	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	4.03397696959896	3.92088820296676	4.18108971141226	3.68612947473628	4.11208514563729	3.9952282472812	4.61759472908684	4.66938504247204	1.06741129812037	0.0178793606388234	0.118645542060274
Merged-chr2-50687525-4	chr2	50687435	50687635	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-222149.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	5.64425857019937	5.49690479340522	5.22421294763861	5.28000913812486	4.89762505133783	4.96325131538162	5.34458587909126	4.90339296058259	-0.703067138696373	0.0275601224179639	0.158380587242714
Merged-chr5-123860604-3	chr5	123860506	123860706	+	819.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	X7A_LINE|LINE|CR1	4910.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	3.34629214592205	3.22977935529197	3.28628903762464	3.09594374174455	3.58614275714943	3.77993373652602	3.21201374338537	3.56175572436232	1.09744417124594	0.0378088223045846	0.19439426197761
Merged-chr16-93603970-4	chr16	93603840	93604040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145482)	promoter-TSS (NM_145482)	-125.0	NM_145482	224440.0	Mm.10628	NM_145482	ENSMUSG00000022948	Setd4	AY037804|C21orf18|ORF21	SET domain containing 4	protein-coding	5.7188218815993	5.89871066533556	6.17560168304883	5.74271248871348	6.78802520672212	7.13770097478966	7.0251183777778	6.95705226651681	1.60662462880813	1.94343134572607e-12	1.98182664408934e-10
Merged-chr9-105495155-4	chr9	105495039	105495239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175025)	promoter-TSS (NM_175025)	-6.0	NM_001253836	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	7.73703914135155	7.84582281073386	7.57810428060305	7.7468198169702	8.25347410823361	8.30142753969368	8.53292498694254	8.00930168550168	0.713783023540949	6.82204265016704e-05	0.00146969180931065
Merged-chr11-46312186-8	chr11	46312016	46312216	+	936.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001252460, exon 1 of 31)	5' UTR (NM_001252460, exon 1 of 31)	242.0	NM_001252460	76884.0	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	3.74650925273416	3.81088615406218	3.97963712749162	3.56739147924197	3.5521042829227	3.75891403500314	3.62648158544648	3.69286870706703	-0.362095382134444	0.447958811822573	0.73332468018769
Merged-chr1-60941446-4	chr1	60941347	60941547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32422.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	5.82501572367973	5.86043148796881	5.82603892988367	5.9419006789894	6.0015326009897	5.46292291832501	5.72493014278376	5.64726051352043	-0.2103101087779	0.428647912269576	0.71961368508163
Merged-chr2-71882684-2	chr2	71882601	71882801	+	596.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001360002, intron 3 of 10)	T-rich|Low_complexity|Low_complexity	7797.0	NM_001360002	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	2.43890853564641	2.22777798530835	2.27440360773731	1.98782057267825	2.93785397782082	2.95930918247455	2.70967498124807	3.0549199108943	5.49712294298274	3.55411897943009e-08	1.68990404032635e-06
Merged-chr12-110706988-4	chr12	110706890	110707090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10595.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	7.9854265348691	8.21427903920268	8.10571347649321	8.06793795648938	7.98006536621823	8.15725669289899	8.0982542429936	8.08127104193226	-0.0243709014583521	0.877045316515434	0.953888128722623
Merged-chr19-32932766-4	chr19	32932666	32932866	+	783.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	175189.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	3.40220006924568	3.58867988371478	3.63249963578212	4.00835685487329	3.61327343526408	3.74931746107978	3.45173095462449	3.57678627115785	-0.291761189389618	0.573956153011856	0.811973307930812
Merged-chr18-52599868-3	chr18	52599764	52599964	+	645.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16051.0	NM_025749	66758.0	Mm.251599	NM_025749	ENSMUSG00000046886	Zfp474	4933409D10Rik|Znf474	zinc finger protein 474	protein-coding	3.45598224223866	3.27654210710586	3.15208070286127	2.95570033241328	3.53253359972604	3.39748715881777	3.72913178542113	3.55870606262388	1.23340224053497	0.0222933869304596	0.137673172681172
Merged-chr14-74643481-3	chr14	74643372	74643572	+	861.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172812, intron 1 of 2)	intron (NM_172812, intron 1 of 2)	2598.0	NM_172812	15558.0	Mm.214351	NM_172812	ENSMUSG00000034997	Htr2a	5-HT-2|5-HT-2A|E030013E04|Htr-2|Htr2	5-hydroxytryptamine (serotonin) receptor 2A	protein-coding	3.66770057405502	3.9434807745411	3.81340497249378	3.53606997469373	3.38232131241655	3.5608861875154	3.37132235257258	3.55944481137228	-0.89677622214339	0.0769875773100283	0.299988983705617
Merged-chr6-48446128-3	chr6	48446047	48446247	+	928.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085417)	promoter-TSS (NM_001085417)	-322.0	NM_001355746	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	4.13765536335947	4.49441162016441	4.3183397051293	4.38837291170095	4.05925758126665	4.26343898129506	4.1676053507229	4.03555018373814	-0.543069474044995	0.175293695613494	0.469985158748016
Merged-chr11-115631675-4	chr11	115631582	115631782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3387.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	4.98802274459737	5.29150314648261	5.21718136489745	4.65234944623896	5.49214159615656	5.01559399701135	4.9997238400075	4.98549224810102	0.203113193610005	0.566648641968162	0.807951645949796
Merged-chr4-40142389-1	chr4	40142289	40142489	+	754.0	f0_balb.idr	promoter-TSS (NM_007386)	promoter-TSS (NM_007386)	-876.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	4.02391256059365	4.09212320717156	3.92698582724358	3.99519484679653	3.91420135545751	3.99681716855794	3.63309619201602	4.27594206695386	-0.101224819826887	0.821213160551623	0.931553699797666
Merged-chr9-104576323-1	chr9	104576223	104576423	+	747.0	f0_balb.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	6840.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	3.23528359462915	2.96303833753992	3.43416590003719	3.36998494417902	2.85078809256075	2.89927761222971	3.11169971289013	2.86397929570449	-1.39388323747563	0.0256356837140485	0.151049223714138
Merged-chr17-26616935-3	chr17	26616817	26617017	+	907.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 3 of 9)	intron (NM_026170, intron 3 of 9)	55405.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	3.8178956908454	3.4817779586315	4.03630128838412	3.60588506750431	3.75140803879392	3.41457835224326	3.35721279642127	3.95113280858301	-0.307967565172809	0.564175810072841	0.806599371831898
Merged-chr2-146099969-3	chr2	146099895	146100095	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122002.0	NM_016889	53626.0	Mm.379070	NM_016889	ENSMUSG00000068154	Insm1	IA-1	insulinoma-associated 1	protein-coding	5.20728418889608	4.82122819119818	5.85887490571055	5.12721116192683	4.12624638876297	4.47097664140253	4.20467083313787	4.27684594270657	-2.22529648135713	1.25847388037273e-07	5.28789328990854e-06
Merged-chr10-75288774-4	chr10	75288665	75288865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-28112.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	6.12585162242616	5.87242239793952	5.9396544017542	6.03501826251855	5.68135255450743	5.89705665530372	6.20581081000634	5.88976529251463	-0.116781411452768	0.64744593412698	0.851667779256884
Merged-chr13-81171483-4	chr13	81171379	81171579	+	927.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 86 of 89)	intron (NM_054053, intron 86 of 89)	207405.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	4.58172944656557	3.89225799413418	4.36392857293699	4.08592695935278	4.04927159810772	3.82482788438277	4.26197351518855	4.32063702826172	-0.302586712041916	0.504165161263998	0.770626277304553
Merged-chr13-82073561-4	chr13	82073471	82073671	+	995.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	290324.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	4.7982736905947	5.01516731222886	5.19249650276166	4.78918312038344	6.00748237476914	5.72162544999693	5.73058246996542	5.64249515614588	1.5002055740802	2.32516619963675e-07	9.22536259330792e-06
Merged-chr9-58580986-4	chr9	58580854	58581054	+	823.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1286.0	NM_001293673	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	4.31410826194566	3.86524373315629	4.03032106442917	3.67153170509174	4.00044705092373	3.90014486231925	3.91879902354186	3.6616153102311	-0.276098465636625	0.561413004743188	0.80494560024742
Merged-chr13-29855484-6	chr13	29855363	29855563	+	857.511108	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308486, intron 1 of 5)	CpG	210.0	NR_131896	68916.0	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	4.19112563596402	4.18873188043877	4.45424315930381	4.14110843664717	4.20681409679471	4.50168593102917	4.50932535595162	4.36979645301287	0.373591717713862	0.335515477122266	0.645904044628273
Merged-chr19-29821152-3	chr19	29821058	29821258	+	743.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8184.0	NM_177721	240614.0	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	3.18337404083105	3.02126098181489	3.29612153658026	3.18363209990104	2.90573521634189	3.03447798965272	3.33453651300272	3.39724916729222	0.0262046539189309	0.964214279957655	0.987306728614525
Merged-chr2-166195215-4	chr2	166195104	166195304	+	955.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39521.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	4.63921751380141	4.94854586912885	4.90963620237632	4.96081092463692	4.75874380098113	4.7740797034074	5.16263021595363	4.71987853145461	-0.02934584821596	0.931320576491925	0.975279137937273
Merged-chr2-22771554-4	chr2	22771450	22771650	+	787.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2777.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	3.79894650926964	4.17584178285274	4.324073861828	3.67402161130206	4.88322391188929	4.76595493155086	4.30383766024626	3.9768223685341	1.24954358847539	0.0087476674652417	0.0716760933013053
Merged-chr13-43531548-4	chr13	43531337	43531537	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28754.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	5.22672224926598	4.82359282246991	5.08826021347454	5.05668478518929	4.1193211209197	4.72343864766358	4.33155101912747	4.78676737189195	-1.16018508222157	0.0024659205036966	0.0274767932893896
Merged-chr11-118480880-4	chr11	118480752	118480952	+	746.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153103, intron 3 of 13)	MTA_Mm|LTR|ERVL-MaLR	4020.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	3.41978504395559	3.195026616145	3.2490775834637	3.18437254918168	3.33126337754917	3.47993865322518	3.45803461703706	3.36384319579284	0.532633097996358	0.301143126779975	0.613113658678866
Merged-chr12-70453080-4	chr12	70452969	70453169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028339)	promoter-TSS (NM_028339)	-85.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	7.4021923238617	7.17001269325609	7.26086449360934	7.28998968344664	7.39365931966	7.38271525696528	7.25647841772328	7.29821733596761	0.0725917626079913	0.681909688736091	0.869647747559641
Merged-chr7-100943489-4	chr7	100943377	100943577	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	LTR108c_Mam|LTR|ERVL	-11316.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	4.29375062782772	4.57298598499108	4.29438006155745	4.67350623205581	4.6561855779561	5.05381098126213	4.62160365359984	4.43374111026836	0.48188203047581	0.214891627947338	0.520884426550776
Merged-chr2-102876345-4	chr2	102876253	102876453	+	871.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	MIRc|SINE|MIR	25312.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.1953283960733	4.0723611270772	3.98538394242374	4.28586291905087	4.48789523883836	4.37176671704619	4.80901765224075	4.41615848009034	0.894865610527053	0.0247102960832928	0.147320057367677
Merged-chr6-30076357-1	chr6	30076257	30076457	+	1000.0	f0_balb.idr	promoter-TSS (NM_001164229)	promoter-TSS (NM_001164229)	36.0	NM_001164229	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	3.315470241321	3.23405566710544	3.6158278822218	4.15599063910308	2.76587689864269	2.88441454339055	2.76402956516071	2.76972402394217	-4.25193150160793	3.20477413353566e-06	9.99617081730652e-05
Merged-chr1-65187669-2	chr1	65187569	65187769	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310624, intron 1 of 41)	intron (NM_001310624, intron 1 of 41)	984.0	NM_011086	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	2.43495019335575	2.58074861220314	2.58557252041741	2.76881095862031	2.92397814187062	2.82690852612853	2.94293604819122	2.84208927798306	1.29357792056513	0.0603929397106428	0.259583880172937
Merged-chr4-48109304-1	chr4	48109204	48109404	+	821.0	f0_balb.idr	Intergenic	Intergenic	-15615.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	3.22436578597235	3.16376788497702	3.43912812099486	3.2248800277021	3.02182184157162	3.33710667360674	3.15388074877006	3.22309608920812	-0.308727890665912	0.576202778624366	0.813446739194192
Merged-chr17-75119652-4	chr17	75119547	75119747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019919, intron 3 of 33)	intron (NM_019919, intron 3 of 33)	-59134.0	NM_001331236	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	6.27883594232076	6.54545327473541	6.39612024811891	6.6891969320466	6.76986728659841	6.64485322117827	6.79530796434542	6.73001161421401	0.335548941487985	0.119984687886079	0.38344891804151
Merged-chr6-5006772-4	chr6	5006654	5006854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	103434.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	6.16019857231456	6.12016176382475	6.21871242413543	6.37937276596491	5.87363578533003	5.87203629350128	6.25914164101524	5.89697203822182	-0.388153739937399	0.112627987350646	0.371111186251176
Merged-chr10-93262356-4	chr10	93262208	93262408	+	838.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	48851.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	3.4724004723686	3.45957893536325	3.34423329722652	3.39115758382363	4.00243246244293	3.52689312925054	3.95715785293137	4.01416174953873	1.46760220851184	0.00236831457830622	0.0266169080155124
Merged-chr18-5536990-4	chr18	5536891	5537091	+	741.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033552, intron 4 of 6)	intron (NR_033552, intron 4 of 6)	-54869.0	NM_011546	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	3.2833524998985	3.58057720424259	3.52607811926733	3.40817595890939	3.71924310242547	3.52490668730697	3.71396354880472	3.6800235413647	0.682955343573677	0.158875797544088	0.446064231358103
Merged-chr6-37223934-4	chr6	37223849	37224049	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	76027.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	4.02796917530578	4.44235987572911	4.53998647994624	4.42210725748178	4.54435123617445	4.26453264968053	4.06767677743413	4.87094260175252	0.232783942050332	0.587523625389559	0.819278583121838
Merged-chr2-34906987-4	chr2	34906887	34907087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028716, intron 4 of 14)	intron (NM_028716, intron 4 of 14)	6989.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	7.62281898104683	7.81346527087231	7.52652563714654	7.54161583959562	7.41940216175211	7.4494689783333	7.88766938550898	7.5305322604698	-0.0610257878276178	0.751064527097066	0.901974387957517
Merged-chr6-6955929-4	chr6	6955826	6956026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077713)	promoter-TSS (NM_001077713)	-92.0	NM_001077713	71238.0	Mm.389086	NM_001077713	ENSMUSG00000042505	Sdhaf3	0610005M07Rik|4933430A16Rik|Acn9	succinate dehydrogenase complex assembly factor 3	protein-coding	7.89107507387849	7.73262211618862	7.75607070740052	7.97758281877503	8.01932561085022	7.64743995007352	8.00256221377636	7.64224645592474	-0.00111400980512057	0.995169564961549	0.998253678348653
Merged-chr7-99159033-4	chr7	99158903	99159103	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026384, exon 5 of 8)	exon (NM_026384, exon 5 of 8)	-17859.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	5.57297476186027	5.50821193717291	5.25635316842234	5.51118823552384	5.87714876741698	6.09115521477036	5.9495595156923	6.11126596789444	0.871500547025314	0.000717931698695981	0.0103360963554776
Merged-chr10-20724513-4	chr10	20724406	20724606	+	809.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	572.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	3.76298807067378	4.05591343218791	3.46460785540065	3.4991395048739	3.91412688791231	3.93787820191197	3.69416060529686	4.20821493477053	0.674947590328276	0.170950369568997	0.464071117837823
Merged-chr6-83584273-3	chr6	83584161	83584361	+	853.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_078345, intron 7 of 7)	intron (NR_078345, intron 7 of 7)	-11757.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	3.52930423696756	3.58368640001869	3.68463911208965	3.7491183616927	3.64732892666833	3.58805806218475	3.27923642639264	3.4134002861348	-0.484532877821307	0.33821920642451	0.647824496277247
Merged-chr7-45309677-3	chr7	45309574	45309774	+	712.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175130, intron 17 of 24)	intron (NM_175130, intron 17 of 24)	-15284.0	NR_110499	100040970.0	Mm.289810	NR_110499	ENSMUSG00000046721	Rpl14-ps1	Gm9811	ribosomal protein L14, pseudogene 1	pseudo	3.47342567777335	3.64787745622424	3.35896244270671	3.44655254016087	3.66906419566719	3.27576104449765	3.46052212157964	3.52575255155238	0.0437018110004069	0.931922363981031	0.975397745055384
Merged-chr11-114813001-4	chr11	114813004	114813204	+	963.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14180.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	3.65039529147321	3.41652976425549	3.54840406230624	3.55383859003412	3.35487260905523	3.81826320888194	3.42413501810417	3.31368499829537	-0.185421459908072	0.719114594415376	0.887785782541509
Merged-chr14-48488522-2	chr14	48488392	48488592	+	605.25	f0_balb.idr|f1_c57bl6.idr	intron (NR_132324, intron 9 of 13)	L1MA4|LINE|L1	42140.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	3.44745944891233	3.36370227917215	3.94017551550584	3.25384895801207	2.99247503085472	3.25609168158966	3.26078446127372	3.44595602587834	-0.985149494467285	0.0947587652257625	0.336869542350274
Merged-chr6-112091118-6	chr6	112091054	112091254	+	954.0277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119554.0	NR_027865	67336.0	Mm.378014	NR_027865	ENSMUSG00000100219	1700054K19Rik	-	RIKEN cDNA 1700054K19 gene	ncRNA	4.45712535527478	4.44658895321347	4.61674637625539	5.09959789477652	3.97414643369746	4.13512104039126	4.39479862766991	4.57580421787096	-0.951096592686863	0.0279417724368099	0.159953950480915
Merged-chr3-138522037-5	chr3	138521857	138522057	+	915.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4234.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	4.02402249287252	4.15060527747098	4.02460196560468	4.34983404305124	3.83145727507118	3.92658756652879	4.23626521144183	4.51808375336896	-0.00565103251851897	0.990028369333706	0.99607374589458
Merged-chr3-40529091-4	chr3	40528984	40529184	+	909.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-6172.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	4.65356982888965	4.51495322364125	4.15991120996379	4.03342221053019	4.78686284346864	4.71054204492364	4.66850284861245	4.68798699080997	0.823303584937965	0.0327622796327984	0.177418312688904
Merged-chr19-55840967-4	chr19	55840868	55841068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-54353.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	6.25086483595705	5.95533483335381	5.90317559941272	6.01453933835892	6.27142695548448	5.95670825668991	6.0685913069339	5.89898460298946	0.0522369969424619	0.832446487218183	0.935835439369668
Merged-chr17-6978799-4	chr17	6978711	6978911	+	961.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026611).2	promoter-TSS (NM_026611).2	-49.0	NM_026611	68195.0	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	5.74861191020438	6.2735023550645	6.40242130588022	5.39037008766803	5.7116651829933	6.42906913280983	5.72026067592402	5.55041488793839	-0.178656878395733	0.610207540100324	0.831564096406981
Merged-chr5-20702094-11	chr5	20702071	20702271	+	951.4772949999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001170745, exon 21 of 21)	3' UTR (NM_001170745, exon 21 of 21)	179953.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	4.05561866308239	4.12773238589881	4.62124549239721	4.72339195881098	4.2470428565957	4.12557989623796	4.2845897060483	4.61811525673386	-0.226738101874214	0.604819102934056	0.828577841825802
Merged-chr1-9797302-4	chr1	9797245	9797445	+	915.339294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177547)	promoter-TSS (NM_177547)	-785.0	NM_133220	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	4.17054801913656	3.63398165696659	3.96857433368247	3.72436545910074	3.87917852375211	3.40468643587509	3.54339290530521	3.77657951400357	-0.626253293189606	0.221707601438663	0.529827945704301
Merged-chr8-61581495-2	chr8	61581402	61581602	+	789.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	9667.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	3.21890416954489	2.60774801923554	2.66638338173976	2.45052892887748	3.82114377797751	3.33823641017135	3.26049215996664	3.09848950949258	2.47586646599953	0.040653850212122	0.203796070445006
Merged-chr13-113612134-2	chr13	113612034	113612234	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	6430.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	3.15993550035119	3.36791418696692	3.09917807362636	2.69318519497181	3.09905161219563	3.39029824028948	3.02469939167562	3.27285183756133	0.395340850562964	0.525284025563016	0.783229855070132
Merged-chr12-75765975-4	chr12	75765884	75766084	+	755.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30255.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	3.06735388897673	2.8575468568696	3.1302392418795	3.23979571522599	3.41055276899126	3.46818154383684	3.11915010467947	3.12868870289076	0.761464174863482	0.19335149255975	0.493529716199714
Merged-chr8-13646896-4	chr8	13646780	13646980	+	956.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	30707.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	5.23277761467764	5.12769828655102	5.00102194850523	5.64118167658753	5.27407213392131	4.98450981939046	5.14607720266775	4.9976866704288	-0.340446964523939	0.306486232406582	0.618975748704965
Merged-chr11-74898029-4	chr11	74897930	74898130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177325)	promoter-TSS (NM_177325)	-50.0	NM_177325	104662.0	Mm.220843	NM_177325	ENSMUSG00000038335	Tsr1	AU040765|AW550801|mKIAA1401	TSR1 20S rRNA accumulation	protein-coding	6.37631519035066	6.31156649827389	6.21298105567038	6.04679369556296	6.20145675778652	6.20092332649153	6.41114526833387	6.14861187113273	0.0210051995006076	0.927823775330654	0.973676684863854
Merged-chr13-98263114-4	chr13	98263039	98263239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178918)	promoter-TSS (NM_178918)	63.0	NM_001271388	68558.0	Mm.209642	NM_023472	ENSMUSG00000021661	Ankra2	1110004M18Rik|Ankra	ankyrin repeat, family A (RFXANK-like), 2	protein-coding	8.72552176007075	8.74763334296805	8.82061176224802	8.58026508371396	8.71241695568795	8.80795448101206	8.6702687340744	8.77922301757874	0.0324313849877456	0.824669783312867	0.932739631768044
Merged-chr11-63138918-4	chr11	63138827	63139027	+	797.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302255, intron 3 of 4)	intron (NM_001302255, intron 3 of 4)	6124.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	4.23169069514713	4.29048379451576	4.18517260850055	4.62748166137203	4.43618793016665	4.15619919662095	4.21408340113735	4.31902913937854	-0.176144409158137	0.665548073361833	0.861482624541591
Merged-chr5-147574709-4	chr5	147574621	147574821	+	894.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010228, intron 25 of 29)	intron (NM_010228, intron 25 of 29)	144565.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	4.17165472212446	3.9176913396439	4.01794806311832	4.32621747077902	4.48402193870412	4.43849535481551	4.5615788806764	4.39185400464513	0.801222127143651	0.0463141981108923	0.221144315243523
Merged-chr12-85228670-3	chr12	85228502	85228702	+	937.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9121.0	NM_145445	217715.0	Mm.29041	NM_145445	ENSMUSG00000004788	Eif2b2	EIF-2Bbeta|EIF2B	eukaryotic translation initiation factor 2B, subunit 2 beta	protein-coding	3.52642486894869	3.39713356319777	3.76687332268526	3.69180539416484	3.43048675905526	3.2741554149978	3.34579457794411	3.41476917292547	-0.801692040312784	0.121908110722772	0.386913737384038
Merged-chr10-99107577-2	chr10	99107477	99107677	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015737)	promoter-TSS (NM_015737)	495.0	NR_153333	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	4.32827027382716	4.30425226305559	4.41558664715521	4.2279955642718	4.38169006086187	4.5860180951185	4.39553170331351	4.493758805071	0.355050791637996	0.335855774567096	0.646029943887149
Merged-chr4-150012731-4	chr4	150012642	150012842	+	997.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	-3719.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	4.94901714679075	5.23716512873434	5.02362177336186	4.92399356728313	5.08323522954414	5.84986107809292	4.92610143686098	5.21894675877193	0.512005448382465	0.144441827943774	0.423566302937828
Merged-chr3-81102342-4	chr3	81102224	81102424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	65908.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	7.61060290471906	7.24854103585484	7.17485740177982	7.5510563177486	7.62165134958723	7.48723619796781	7.36574309456678	7.54658900911747	0.127845474723532	0.507430629934959	0.772768026875638
Merged-chr19-46338713-4	chr19	46338589	46338789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164295)	promoter-TSS (NM_001164295)	-29.0	NM_001164292	67116.0	Mm.218848	NM_024192	ENSMUSG00000036748	Cuedc2	3010002G01Rik	CUE domain containing 2	protein-coding	6.56389369408665	6.79893483520855	6.16381089515779	6.27838715745331	6.76046699252743	6.55692729723803	5.89904189242762	6.57586776184988	0.0291836126086724	0.916511669113406	0.969045329388458
Merged-chr15-6555735-4	chr15	6555618	6555818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24129.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	6.99990594560557	7.35727201558344	7.15391934428607	7.05806653300179	7.06030069577936	7.16532926579128	6.64067872079532	6.56890293837122	-0.359750994240185	0.110620712687629	0.367371422964248
Merged-chr14-30827580-4	chr14	30827456	30827656	+	763.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028839, intron 1 of 7)	intron (NM_028839, intron 1 of 7)	1962.0	NM_028839	69179.0	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	4.31220291266423	4.59970065902545	4.26965264572387	3.76165701029423	4.39129660457133	4.30575153067799	4.01217792528064	4.12800931837839	-0.10059909610526	0.82572310549936	0.933159928336386
Merged-chr1-52726922-4	chr1	52726836	52727036	+	991.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357464, intron 1 of 7)	CpG	382.0	NM_178081	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	5.45952152758558	5.05269839085324	5.40837843686906	5.24853283137534	4.99528934858216	5.38028794725192	5.11750777800533	4.80393163249416	-0.392827602864393	0.219685419341897	0.527345281266327
Merged-chr3-146498808-4	chr3	146498630	146498830	+	806.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316756, intron 1 of 14)	B3A|SINE|B2	1023.0	NM_001316756	70951.0	Mm.383235	NM_027617	ENSMUSG00000028188	Spata1	4921536I21Rik|AV266943|SP-2	spermatogenesis associated 1	protein-coding	3.74382512110864	3.76955638100065	3.79422099012701	3.50026109821907	3.72210241749272	3.7561382169221	3.72887556774549	3.6904116714833	0.0921879929760783	0.842727058929911	0.940283196304281
Merged-chr2-169929845-5	chr2	169929742	169929942	+	850.3133539999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33345.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	3.5471328645535	3.26871669060799	2.87657252128317	3.2394643500931	3.36680911014821	3.51122412138118	3.21246835460876	3.39407999253514	0.432388729485358	0.455857765960977	0.739247569027891
Merged-chr9-123986296-4	chr9	123986213	123986413	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7905.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	5.42507595724639	5.17458857211637	4.88275679771405	5.51784158437829	5.51006322456743	5.21972878270874	5.42596282470155	5.52813321676348	0.249559506015538	0.42543770002743	0.716959775794977
Merged-chr17-34586966-2	chr17	34586866	34587066	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010929, intron 28 of 29)	CpG	-2840.0	NM_134116	106512.0	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	4.46564823486932	4.19963075838736	4.09004117422355	4.20983703743195	4.67222729431073	4.67720169595095	4.56141080283835	4.37922137802118	0.778482296715801	0.0380836980212502	0.195426396183012
Merged-chr2-148498019-3	chr2	148497914	148498114	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54479.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	3.56966910510751	3.39030025369603	4.40744308307726	4.0531111675087	3.43760093084694	3.56500254506467	3.55643566828234	3.62592872488533	-1.11520212926241	0.0453415780217466	0.21802082933959
Merged-chr6-22459640-3	chr6	22459539	22459739	+	913.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR48B|LTR|ERV1	-103558.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	3.85671662543296	3.76360384513452	3.54671216059648	4.44617472031093	3.89251543330967	4.03547144095339	4.5424824065257	4.23717366853808	0.595068032999404	0.265099673115132	0.576956662317123
Merged-chr2-3727823-4	chr2	3727732	3727932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	14374.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	5.77965741370635	5.46368242468481	5.84899170595436	6.10316455706853	5.54317674438531	5.48283716146052	5.70385912888385	5.48891656670835	-0.461650919110444	0.104647348032367	0.355749855460871
Merged-chr9-53386923-4	chr9	53386820	53387020	+	968.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212445, intron 1 of 7)	intron (NM_212445, intron 1 of 7)	2897.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	4.79488762478849	4.55231256532256	4.79566340390552	5.228722220761	4.93107669083451	5.04495833876674	4.98587005796302	5.03933123070367	0.209518952788975	0.553835967896322	0.80043514274805
Merged-chr14-103115555-4	chr14	103115467	103115667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207215, intron 84 of 84)	intron (NM_207215, intron 84 of 84)	-16001.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	6.31700072721059	6.48127046108181	5.80961096183321	5.91412569419035	6.39892315077682	6.08729157129805	6.15798694928533	5.80549810786721	-0.0252678547191742	0.928330396837739	0.973969592850704
Merged-chr3-127498371-3	chr3	127498275	127498475	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	740.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.44235148002798	3.45585177592309	3.51526224398265	3.03534950574858	4.54529554082324	4.22303798262648	4.46832010308418	4.73744194341424	3.42862978157786	6.44189472931577e-13	7.10895542539483e-11
Merged-chr5-76588715-4	chr5	76588585	76588785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3029.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	7.42457713852191	7.41646228930582	7.3128312125854	7.62523653949648	7.43203459059047	7.68839711467092	7.77370757649615	7.35000680878398	0.146009625509339	0.447887271202976	0.73332468018769
Merged-chr2-59137487-1	chr2	59137387	59137587	+	566.0	f0_balb.idr	intron (NM_001362394, intron 1 of 13)	intron (NM_001362394, intron 1 of 13)	23196.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	3.05317026526372	2.95590714907251	3.16842677094687	3.26104932811559	3.30830584022412	2.96493342829504	2.98225755177972	2.92615719556002	-0.223968611996427	0.710718384681116	0.884203816607274
Merged-chr1-171504164-4	chr1	171504071	171504271	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019484, exon 1 of 1)	exon (NM_019484, exon 1 of 1)	693.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	4.90820765943345	4.71888760972962	4.57200083517493	4.58916065015777	4.71744860097986	4.82831165654078	4.63339095039701	4.90570986736107	0.163972069465178	0.631661603663903	0.843531757419958
Merged-chr10-81551721-4	chr10	81551587	81551787	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6641.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	5.08785514802527	5.49072887654132	5.05379193060409	5.23085606441429	5.36898661446462	5.22936215830346	5.1306469485542	5.08526966023874	-0.0314506245835282	0.918271499027686	0.969889091028279
Merged-chr17-7945866-4	chr17	7945747	7945947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025789, exon 1 of 8)	exon (NM_025789, exon 1 of 8)	233.0	NM_025789	66832.0	Mm.29830	NM_025789	ENSMUSG00000073471	Rsph3a	1700012G05Rik|4930524H12Rik|R74860|Rshl2|Rshl2a	radial spoke 3A homolog (Chlamydomonas)	protein-coding	6.71097514684664	6.92293159098132	6.99775271525159	6.44099523817165	6.91899828280132	7.05960233923992	6.95020443854593	6.90469807595155	0.263082734165331	0.227937014274408	0.536696679448311
Merged-chr14-121995003-4	chr14	121994916	121995116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 7 of 8)	intron (NM_026861, intron 7 of 8)	-29823.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	7.70479584596234	7.65939388077665	8.20928980162393	7.91473870169348	7.85986295046595	7.82369132849926	7.95121576128139	7.78967527937749	-0.0419367486475442	0.822521382365367	0.932143478460956
Merged-chr17-5190236-4	chr17	5190144	5190344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	195170.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	6.95437116282157	6.91323472549791	6.96828407035672	6.73758216680534	6.64495901505195	7.10630180245864	7.06430734671772	7.06049548506276	0.117486421550422	0.577185483302177	0.813924639099529
Merged-chr1-54795461-4	chr1	54795379	54795579	+	987.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 2 of 27)	MTD|LTR|ERVL-MaLR	130908.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	5.16681400649037	4.7051534315782	4.63044507024333	5.06873672966388	4.89012120168656	4.43060206437699	4.93587265656823	4.29734686162647	-0.494891033434624	0.209214507831298	0.513612452677243
Merged-chr2-181278043-4	chr2	181277940	181278140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198169, exon 2 of 10)	exon (NM_198169, exon 2 of 10)	9926.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	5.38231783231494	4.98928397357813	5.49651388744931	5.83924246520159	5.26203437780063	5.22704902767666	5.6900136642825	5.54562696307832	-0.0639486730710427	0.847931058564088	0.942563001161167
Merged-chr13-111924651-4	chr13	111924551	111924751	+	868.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56715.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	4.13575670812059	4.36244038967506	4.60377550455953	4.04462463433047	3.93145899285427	4.05656556973593	4.02164245682723	4.08593829150309	-0.703536121959637	0.103087110631866	0.352686250789021
Merged-chr7-103762396-3	chr7	103762303	103762503	+	729.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5053.0	NM_147098	259102.0	Mm.377844	NM_147098	ENSMUSG00000050281	Olfr630	MOR17-1	olfactory receptor 630	protein-coding	2.2555993929222	2.20951292428399	2.25576989484031	1.97120211484166	3.147843131358	2.88178682577093	2.81270861470551	2.88092664021476	6.8789240072868	3.65391908541832e-11	2.98601959335236e-09
Merged-chr7-122459383-4	chr7	122459264	122459464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 5 of 16)	intron (NM_001316672, intron 5 of 16)	170239.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	5.80281671487849	6.07951226156334	5.48052304265845	5.85658283049528	5.85513007437902	5.93030594577983	5.77434092471412	5.53653794453703	-0.0732670040320063	0.788330693299117	0.918087641460787
Merged-chr9-106236285-3	chr9	106236193	106236393	+	914.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020559, intron 9 of 10)	intron (NM_020559, intron 9 of 10)	11437.0	NM_001291835	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	3.65268968711642	3.6005488623786	3.79823723285558	4.1975533464709	3.61160368627231	3.34775897085891	3.2249585403841	3.23314490107202	-1.54062668363635	0.00718348899547346	0.0621039577056895
Merged-chr17-42943616-4	chr17	42943506	42943706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67182.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	5.4955413721507	5.87661164476316	5.61346290552113	5.76319363629707	6.07133503784679	6.01766594502063	5.92421737225353	5.86202630608049	0.435134179989548	0.0860310841689084	0.319603681631458
Merged-chr10-57759173-4	chr10	57759092	57759292	+	987.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25731.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	5.09961550801582	4.92901001483984	5.49288690802832	5.52614272058944	5.01052348606261	5.02468364326841	4.93782955342285	4.76087876953613	-0.681183702224057	0.0424327471621842	0.209137711681282
Merged-chr11-5996098-2	chr11	5995998	5996198	+	768.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001174054, intron 5 of 20)	intron (NM_001174054, intron 5 of 20)	40340.0	NM_019661	56418.0	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	3.15166794784297	3.04391888989701	3.03017438308821	3.17871234032016	2.95592799815045	3.26312438473225	3.19640079454617	3.20722640670038	0.186295554201187	0.740780164747339	0.898040260084917
Merged-chr2-21261801-4	chr2	21261712	21261912	+	975.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56088.0	NM_177588	208967.0	Mm.268841	NM_177588	ENSMUSG00000048550	Thnsl1	AW413632	threonine synthase-like 1 (bacterial)	protein-coding	4.63532938341784	4.82070502377818	4.84035701579756	4.89523900763401	5.10817938203059	4.85722667733387	5.17398960048371	5.13825296461	0.525843322101604	0.100662147255852	0.348307373463824
Merged-chr8-120821573-4	chr8	120821445	120821645	+	792.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82906.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	3.8698438087504	3.71988513331558	3.87041025954167	3.70237486111837	3.76502750533643	3.99083825095926	3.80493859617053	3.86811929937646	0.206899463449182	0.640335368408464	0.848084345301076
Merged-chr9-108492225-3	chr9	108492124	108492324	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168373, intron 1 of 26)	intron (NM_001168373, intron 1 of 26)	1548.0	NM_001168373	71472.0	Mm.289706	NM_027804	ENSMUSG00000006676	Usp19	8430421I07Rik|AI047774|Zmynd9	ubiquitin specific peptidase 19	protein-coding	3.49601549868124	3.44467797822927	3.56861770790548	3.17790946764013	4.78165055459039	4.22740295183907	4.67946334889066	4.70118103554499	3.38919067161411	1.12337387386945e-13	1.45647775898277e-11
Merged-chr17-78249154-4	chr17	78249047	78249247	+	781.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	48899.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	4.23493901587085	3.72735353125484	3.64163011048262	4.01369583600472	4.18517996631977	3.9381162153685	4.00291894630421	4.06393151142829	0.33832220870087	0.4566952000209	0.74000882449207
Merged-chr6-114648774-4	chr6	114648686	114648886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 2 of 19)	intron (NM_001253718, intron 2 of 19)	5689.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	6.28860483033723	5.81524174914032	6.23704656877579	6.03902266494542	6.00044773006764	5.65310070652049	5.99151930481892	5.97471106592564	-0.284927227839909	0.266977341777464	0.578603769607328
Merged-chr8-121116608-3	chr8	121116512	121116712	+	753.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013519, exon 1 of 1)	5' UTR (NM_013519, exon 1 of 1)	441.0	NM_013519	14234.0	Mm.14092	NM_013519	ENSMUSG00000046714	Foxc2	Fkh14|Hfhbf3|MFH-1|Mfh1	forkhead box C2	protein-coding	3.24177873156413	3.31880869945081	3.24219820328013	3.27980513289838	2.99985242848354	3.23092556758249	3.10952813615059	3.54931772719801	-0.137894724018617	0.806615191524193	0.92545113102243
Merged-chr16-43454696-2	chr16	43454596	43454796	+	880.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	-34500.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	3.23737739093886	3.18883683674687	3.13235856941786	2.65287753010882	2.78534163551826	3.06762750232957	2.67052124791715	2.88997175781453	-0.908236807779654	0.178388804213467	0.474235309662659
Merged-chr1-183294812-4	chr1	183294696	183294896	+	929.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151660, exon 2 of 13)	non-coding (NR_151660, exon 2 of 13)	-2264.0	NM_181732	108909.0	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	4.84262031497309	5.27556872617302	5.1301516343754	5.33411767741813	4.60469030059412	4.94059893532745	5.38862783234899	5.21936226313681	-0.197343763797028	0.579702911667207	0.815474743074892
Merged-chr10-44233553-2	chr10	44233453	44233653	+	857.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	18128.0	NR_027506	70365.0	Mm.87073	NR_001582	ENSMUSG00000091358	Speer5-ps1	1700007C10Rik|SPEER-5|Speer5-ps	spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1	pseudo	3.05911676376374	3.27732162877372	3.16504158106224	2.71236961133985	3.0159533157875	2.77931932156846	2.74057422630477	2.74686107061287	-1.05833275737918	0.119733321291551	0.382999194508867
Merged-chr2-130295109-2	chr2	130295009	130295209	+	859.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110513)	promoter-TSS (NM_001110513)	-830.0	NM_001110513	228598.0	Mm.32582	NM_152993	ENSMUSG00000053552	Ebf4	Ebf3|O/E-4|Olf-1	early B cell factor 4	protein-coding	3.2497820441242	3.03132982668114	3.07949885470632	3.24239207657766	2.90674201838364	3.12618707241396	3.00721586695516	3.24838311040632	-0.340130288465961	0.556196023586072	0.801844667385676
Merged-chr9-21014824-4	chr9	21014745	21014945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1095.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	6.0025274549967	6.48486661299401	6.08902108285057	5.53205811888482	6.07101515844105	6.36319037659856	6.24789919825323	5.72989743808205	0.0920344572376471	0.762795675700117	0.907011913026374
Merged-chr15-79455015-4	chr15	79454911	79455111	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12868.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	4.59580926801295	4.64223331218294	4.46483529078868	4.586244284964	4.73922611802795	4.92527027558127	4.96389937941523	4.71295545194796	0.546694130468584	0.105704101987232	0.358059880804702
Merged-chr17-80222425-2	chr17	80222325	80222525	+	825.116699	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2026.0	NM_026053	67242.0	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem nuclear organelle associated protein 6	protein-coding	3.90871666216866	4.38227084823176	3.74611973645	3.63299309542537	3.94941953777369	4.13194735907352	3.89293474795929	4.00530975001062	0.133354313647032	0.779445438887135	0.913960543870111
Merged-chr7-101900853-4	chr7	101900748	101900948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081679, intron 3 of 3)	MIRb|SINE|MIR	2937.0	NM_001282088	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	6.75352221286462	6.75023466376264	6.56064333311819	6.35963186118546	6.55551250011398	6.73673162708426	6.40930803627215	6.52326930693324	-0.0635940222070886	0.77605203706512	0.912672790071016
Merged-chr17-57198457-4	chr17	57198358	57198558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-4277.0	NM_019418	50930.0	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	5.09791553483993	5.0861820781802	5.50137557575725	5.14739216458321	5.61076175138642	5.56462024595051	5.62243364045309	5.41531946165127	0.61488801784574	0.031319396624536	0.17231841480543
Merged-chr5-90747351-4	chr5	90747259	90747459	+	884.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11939.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	4.61412699971885	4.53310868332707	4.81394791231306	5.0606479650334	4.59484337956678	4.83313847646991	4.92932789668738	5.13386892084371	0.185006109152917	0.615150751521776	0.834301983320473
Merged-chr4-135618186-3	chr4	135618105	135618305	+	942.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8450.0	NR_015613	73937.0	Mm.292326	NM_028688	ENSMUSG00000086788	1700029M20Rik	4930406E24Rik	RIKEN cDNA 1700029M20 gene	ncRNA	3.4026502035247	3.6013550577851	3.61461477721209	3.53662657486578	4.16539424047604	4.56211618095181	4.6010175370654	4.19227683742141	2.2902338547139	8.32802423174282e-07	2.96686905300912e-05
Merged-chr16-23284627-4	chr16	23284540	23284740	+	979.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-5830.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	4.93449740098384	4.90279480463137	4.27447434054621	4.70677364226913	4.52776741819201	4.78063754604564	4.70285584555494	4.93194254153091	0.0158143946686149	0.96613953772077	0.988026381474581
Merged-chr13-64110518-2	chr13	64110422	64110622	+	666.333374	f0_c57.idr|f1_c57bl6.idr	intron (NM_001001321, intron 6 of 11)	intron (NM_001001321, intron 6 of 11)	18808.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	2.51674927710716	2.46087288374763	2.51695553925489	2.32719562048816	3.30064262932409	3.01517351208391	3.58648581614269	3.29772991007079	4.63824091295537	5.36806072603824e-08	2.43993099884212e-06
Merged-chr9-60481470-2	chr9	60481370	60481570	+	879.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040426, intron 3 of 17)	intron (NM_001040426, intron 3 of 17)	29565.0	NM_001040426	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	3.61115584725874	3.96178199322487	3.45358685156748	3.27543052270824	3.49904508579163	3.17789460744196	3.2625453355749	3.394492697561	-0.856474445345236	0.132724144427334	0.405738749474138
Merged-chr4-35061112-3	chr4	35061001	35061201	+	719.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 2 of 3)	MT2B1|LTR|ERVL	-90954.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	3.76685402245649	3.83160251201548	3.65939656319833	3.29375334072245	3.68714280186412	4.12837397962653	3.94148493298551	3.65736629596311	0.651928438575951	0.192951704538651	0.493039538245141
Merged-chr4-150730422-4	chr4	150730329	150730529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78255.0	NM_173774	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	5.35009134211948	5.44634785363192	5.68980761860556	5.79253893383213	5.73233264146333	5.81337274817455	5.68536620254911	5.55550960990949	0.170113841082355	0.537302928929967	0.790999096078477
Merged-chr8-80240105-3	chr8	80240010	80240210	+	846.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-182102.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	4.47315652873138	4.08594133980727	4.69193815613902	4.87743117059869	4.00959300115852	4.18183658658053	4.23954862103236	4.25560267311972	-0.972599073921082	0.0230724089817826	0.140644816872378
Merged-chr8-10924651-4	chr8	10924543	10924743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030715, exon 3 of 3)	non-coding (NR_030715, exon 3 of 3)	3814.0	NR_030715	665306.0	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	7.1422315627252	6.81069394012021	7.05016239924178	7.23790561009819	7.07642672540471	7.01700166609222	7.06198406144397	6.94442589473522	-0.0689369733591295	0.728001539763521	0.89177588928748
Merged-chr7-16902112-1	chr7	16902012	16902212	+	819.25	f0_balb.idr	Intergenic	Intergenic	-4378.0	NM_008967	19222.0	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	3.72243191598715	3.57641699568359	3.86279214596377	3.72676685188496	3.2010501813497	3.62566227562587	3.55197798734248	3.61836900996037	-0.72193300803371	0.156269889027957	0.442131108638244
Merged-chr6-87517273-4	chr6	87517178	87517378	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	15981.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	4.96804647740628	5.18357202892945	5.8199146976505	5.71775976949351	4.97868137245357	4.90347861631886	4.98204591177643	4.96553967540173	-0.965667493835047	0.00536008121467289	0.0500326208032183
Merged-chr4-139203581-4	chr4	139203480	139203680	+	955.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	ID_B1|SINE|B4	9469.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	4.53410880406244	4.64449464871083	4.03069486183362	4.59526391032936	4.88225467990492	4.78819123011178	4.59445936586505	4.68922898020062	0.567622813767901	0.136677650631278	0.411151599640715
Merged-chr1-55044859-4	chr1	55044766	55044966	+	799.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7904.0	NM_026424	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	4.03109999028933	3.8723677200346	4.44710714829722	3.95519523930012	4.01451302871215	3.8817607504107	4.45978831261934	3.87324624144146	-0.0191794930033657	0.966996284908366	0.988437259474296
Merged-chr2-35728756-3	chr2	35728645	35728845	+	761.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001114124, exon 16 of 16)	3' UTR (NM_001114124, exon 16 of 16)	32013.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	3.31622722610838	3.31034011387281	3.53680735679363	3.77594369467525	3.44987280023465	3.16066615472609	3.47130128458533	3.3735743147672	-0.475803099791902	0.387403914239911	0.688274341345912
Merged-chr7-82869948-3	chr7	82869842	82870042	+	795.422241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175366, exon 2 of 2)	exon (NM_175366, exon 2 of 2)	2609.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	4.25195633984745	3.95501861012173	4.40659072881492	4.47472301677615	4.21734809994966	3.75328072705521	3.68465882623237	3.75694717205127	-1.06890873230251	0.0270481737502421	0.156460518891458
Merged-chr10-123196432-4	chr10	123196294	123196494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301628, intron 1 of 20)	CpG	625.0	NM_027604	14479.0	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	5.67861198257218	5.82290928298635	6.14959418868247	6.12308696165695	5.80255600865869	6.05437218758004	5.91712596733859	5.80383029496414	-0.121951027702956	0.638918651992601	0.847409779354821
Merged-chr7-66119048-4	chr7	66118951	66119151	+	953.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 1 of 2)	intron (NM_001081163, intron 1 of 2)	9536.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	4.59692083355795	4.92956185250061	4.37700691525827	4.44021613859725	5.07037307736991	4.64590846889227	4.53556747214564	4.46700288848383	0.245182841560892	0.532644681027269	0.788200754532765
Merged-chr7-136294639-3	chr7	136294549	136294749	+	730.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102277, intron 3 of 3)	intron (NR_102277, intron 3 of 3)	26325.0	NR_102277	77383.0	Mm.227745	NR_102277	ENSMUSG00000110027	C030029H02Rik	-	RIKEN cDNA C030029H02 gene	ncRNA	3.41540231797867	3.90859086785406	3.54430644837518	3.46723615999788	3.8723906245258	4.17327476282066	4.06932207742633	3.54249089682103	0.980553444192021	0.0511958481759997	0.234798278177802
Merged-chr6-8509300-4	chr6	8509194	8509394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133236)	promoter-TSS (NM_133236)	-133.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	8.97372460360473	8.94780488079942	8.88552110987923	9.24930021452535	8.96243556474027	8.92850364575484	9.27861952577922	8.73227923633762	-0.0440190668828582	0.802787871798983	0.923936032101707
Merged-chr18-65524712-4	chr18	65524606	65524806	+	988.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 2 of 6)	intron (NR_105742, intron 2 of 6)	-55524.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	4.91794249776484	4.87006590734763	5.31470419749291	5.40259208306886	5.19645113004962	5.2051208529056	5.28815519302996	5.09541626998631	0.0619245291823636	0.847842806907332	0.942490405473239
Merged-chr15-89231169-3	chr15	89231074	89231274	+	855.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026813, intron 1 of 24)	MLTR11B|LTR|ERVK	19615.0	NM_027805	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	3.43398013313041	3.49215263200742	3.43444139173012	3.20847883483764	3.56030656973032	3.23369358246119	3.47471236534099	3.58881555224823	0.304559256623981	0.55678806217326	0.802235069284239
Merged-chr14-30974355-4	chr14	30974236	30974436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011849, exon 8 of 15)	exon (NM_011849, exon 8 of 15)	22959.0	NM_011849	23955.0	Mm.251494	NM_011849	ENSMUSG00000021918	Nek4	Stk2	NIMA (never in mitosis gene a)-related expressed kinase 4	protein-coding	6.10669352344402	5.77957565261054	5.84223104115295	5.86942668154859	5.92075649262668	5.96940464694713	6.37488873450658	6.19930841697573	0.350840174352264	0.164504709655332	0.454753682544816
Merged-chr5-139149403-1	chr5	139149303	139149503	+	1000.0	f0_balb.idr	promoter-TSS (NM_001081265)	promoter-TSS (NM_001081265)	598.0	NM_001359098	19085.0	Mm.306163	NM_008923	ENSMUSG00000025855	Prkar1b	AI385716|RIbeta	protein kinase, cAMP dependent regulatory, type I beta	protein-coding	4.23450505184929	4.31720284946987	3.9874401620258	4.24152384250502	4.18601523654061	4.40685705499456	4.02442300013046	4.51397278219848	0.212944938643705	0.602418694192691	0.827662913718761
Merged-chr9-32540891-4	chr9	32540781	32540981	+	982.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	CpG	571.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	4.86537256802777	5.05097043441037	5.13178460945634	4.73910080239289	4.52504627660158	4.9659905049233	4.80579577413564	5.21481045466425	-0.107283621689248	0.763977890319408	0.907492132891533
Merged-chr6-115987533-2	chr6	115987433	115987633	+	992.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026376, intron 1 of 35)	intron (NM_026376, intron 1 of 35)	7472.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	3.53512205444609	3.83657269594206	3.53562171926823	3.06649445609334	3.43623015795478	3.47846430093936	3.62355051008429	3.4210864828124	-0.0853524476472795	0.877938987129526	0.954314763971155
Merged-chr1-56100356-3	chr1	56100231	56100431	+	671.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81353.0	NR_126076	69356.0	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA	3.4012640403662	3.5779184164442	3.2945772389245	4.0037109254046	2.65145900091766	2.77994492118058	2.74619151260397	2.8318038690193	-5.11240332882548	1.07608099794213e-06	3.74727834405688e-05
Merged-chr19-47855015-4	chr19	47854907	47855107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010362)	promoter-TSS (NM_010362)	34.0	NM_010362	14873.0	Mm.378931	NM_010362	ENSMUSG00000025068	Gsto1	AA407097|AI194287|AU018802|Gsto-1|Gstx|Spg-r|p28	glutathione S-transferase omega 1	protein-coding	6.59905184381038	6.96469401300527	6.64654862049845	6.57145212867799	6.56962808941475	6.45766635187954	6.65712150167668	6.37246558447458	-0.260587557477086	0.236425623790548	0.546487610436689
Merged-chr5-73492557-4	chr5	73492458	73492658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178896, intron 1 of 10)	CpG	1532.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	6.19788993907362	6.10455101611194	6.39112515941274	6.2819755882781	6.62841862641736	6.37663414342001	6.78908677821208	6.65778131176912	0.552429349942231	0.0125112060407746	0.0924846956876408
Merged-chr11-109860263-1	chr11	109860163	109860363	+	589.0	f0_c57.idr	Intergenic	Intergenic	14385.0	NR_045909	73257.0	Mm.250442	NR_045909	ENSMUSG00000087393	1700023C21Rik	-	RIKEN cDNA 1700023C21 gene	ncRNA	3.01282823553923	2.92459294693606	3.08043236996526	2.87059661355176	3.37969066584955	3.49070127151071	3.3062862824689	3.52004518370755	1.77784751050403	0.00108395654487151	0.0143490687943852
Merged-chr6-71458195-4	chr6	71458106	71458306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-17569.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	5.40806648000727	5.58306797814159	5.81765741217331	5.62432680039708	5.27920259959845	5.58496800565594	5.49651226687113	5.62587274074301	-0.211452934300969	0.447456374456718	0.732976564773399
Merged-chr18-77934391-2	chr18	77934291	77934491	+	797.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4076.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	3.37421721671093	2.81182628501143	3.0210198135112	3.11987584423479	3.47941461589016	3.19799051295207	3.36038937386558	3.26537629848644	0.883189814461688	0.131117382734322	0.403092652599936
Merged-chr9-77655689-10	chr9	77655555	77655755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172925, exon 3 of 3)	exon (NM_172925, exon 3 of 3)	18923.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	4.05269937798752	3.9904138003748	4.69955704017208	4.49439399586136	4.24368762655763	4.00911939729954	4.13658134413152	4.45346863282561	-0.302283701984019	0.495835943677913	0.766009172961978
Merged-chr8-106953777-3	chr8	106953668	106953868	+	915.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	18018.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	4.43455576907382	4.95287418358508	4.81402656160332	4.85527532799569	3.81197997848707	4.37645666211394	4.06798140314528	4.67257799187543	-1.1790931321648	0.00736051354571896	0.0631373817390612
Merged-chr1-36273493-4	chr1	36273396	36273596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153408)	promoter-TSS (NM_153408)	-71.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	8.24571250630051	8.33320748576853	8.24124901658322	8.06220229868831	8.23556313324354	8.39543576480926	8.38062090462424	8.17627164023123	0.101249251250329	0.527639804189428	0.784498766534655
Merged-chr12-12320896-4	chr12	12320803	12321003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 2 of 11)	intron (NM_001146119, intron 2 of 11)	58764.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	7.58591806141351	7.34965955095921	7.50014641719385	7.9483560468458	7.13790619878739	6.78591054972912	7.30002194480748	7.22431774463578	-0.667186298164279	0.00231792373380026	0.0262016701671488
Merged-chr7-78911648-2	chr7	78911548	78911748	+	863.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001162939)	TTS (NM_001162939)	-1776.0	NM_001291221	57444.0	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	2.77932523091587	2.86374008349562	2.71123547878073	2.99063708399418	2.91932059048562	2.95070100740886	3.01023162261414	2.90516064130984	0.4124071164645	0.500784577025099	0.769017904448726
Merged-chr8-72322619-4	chr8	72322538	72322738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008452)	TTS (NM_008452)	3576.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	8.21252986467754	8.52843528060102	8.63516064221277	8.4219135312176	8.5639875292331	8.58070209117777	8.5369989098827	8.65583709013691	0.159148668118555	0.31774647636778	0.629628252035918
Merged-chr1-125434729-4	chr1	125434643	125434843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205386, intron 2 of 12)	intron (NM_001205386, intron 2 of 12)	984.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	7.2245590967551	7.84739497145871	7.54827997588592	6.90525217219823	8.15563752798334	8.10988530575679	7.80330962330857	7.6056779601044	0.676224739401293	0.00610365219732538	0.0549730304635484
Merged-chr17-21708629-3	chr17	21708524	21708724	+	879.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001008501, exon 2 of 6)	5' UTR (NM_001008501, exon 2 of 6)	883.0	NM_001008501	240034.0	Mm.34723	NM_001008501	ENSMUSG00000067928	Zfp760	9430018I06|BC029103	zinc finger protein 760	protein-coding	4.01581531676816	4.09484428568212	4.31739426062287	4.38884649419843	3.92391113235726	3.74189261393862	3.99940953435329	3.85982668259676	-0.903936108281868	0.0389500675561397	0.198257069406355
Merged-chr18-20649108-2	chr18	20649008	20649208	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	intron (NR_155534, intron 1 of 2)	-16142.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	3.09697496445339	3.06622659737094	3.16229080720988	3.41470631949252	3.49646789311456	3.45303362413097	3.32701001547321	3.39221627124355	0.750466030787493	0.175801418893273	0.470658653309832
Merged-chr17-33760481-4	chr17	33760384	33760584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008997)	promoter-TSS (NM_008997)	2.0	NM_008997	19326.0	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	9.14402924243345	9.33643391603954	9.09024805969971	8.97801434935298	9.01232629290455	9.17168922677569	9.01657769271264	8.81536669602105	-0.16358390177055	0.303243593693952	0.615822418132433
Merged-chr3-87214716-4	chr3	87214612	87214812	+	895.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-39965.0	NM_130867	170643.0	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kirre like nephrin family adhesion molecule 1	protein-coding	3.80518661624693	3.97410422093917	4.0376552327733	3.9424740799888	4.55050601565511	4.21749384584505	4.67002542448474	4.72185254351187	1.48647094823909	0.000222275938236474	0.00397222671547427
Merged-chr1-9850286-1	chr1	9850186	9850386	+	583.0	f0_c57.idr	intron (NM_001037759, intron 1 of 16)	L2a|LINE|L2	2005.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	3.2936700925489	3.33610873210272	3.35346724622613	3.27407421595643	3.84617780122688	3.2780743553612	3.55165072533916	3.23037214840467	0.680941164076397	0.208678127607509	0.513019394794843
Merged-chr6-49013190-4	chr6	49013080	49013280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13564.0	NR_126454	75347.0	Mm.207324	NR_126454	ENSMUSG00000107656	4930563H07Rik	-	RIKEN cDNA 4930563H07 gene	ncRNA	5.33437418851939	5.78138060025049	5.73137107769208	5.65559470882797	6.09872617616464	5.60855584622264	5.60179289278168	5.57247829545076	0.192650966258688	0.5055363858967	0.771488881809541
Merged-chr4-128839935-4	chr4	128839833	128840033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33821.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	6.75847604718006	6.86660315255253	6.63608120403457	6.9011700172614	7.01522587454312	7.08811802572007	6.86388163327035	6.84014893834538	0.213460978213039	0.283642071001399	0.595722718088449
Merged-chr12-12223538-4	chr12	12223437	12223637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38602.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	7.5546657263	7.6989539182049	7.71927574539116	7.69470792335667	7.74649708870392	7.76035470866009	7.88171216676667	7.66466512636727	0.12402261545504	0.452667117134772	0.736937759721328
Merged-chr7-27731427-4	chr7	27731334	27731534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029531)	promoter-TSS (NM_029531)	25.0	NM_009560	22718.0	Mm.66913	NM_009560	ENSMUSG00000037640	Zfp60	6330516O17Rik|AI426106|AI449354|Mfg-3|Mfg3	zinc finger protein 60	protein-coding	6.39116570350918	6.59602380005785	6.45982955349435	6.47126099720414	6.04542846170807	6.21159059541933	6.09122797689467	6.3702668399226	-0.456888704273653	0.0412133501392718	0.205407067305116
Merged-chr8-82864410-2	chr8	82864308	82864508	+	849.6666869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_177378, exon 1 of 7)	exon (NM_177378, exon 1 of 7)	1052.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	2.80572768272448	2.8513159569437	3.22852850311553	3.07309319303325	2.87308359770984	3.11370040265951	3.10885620852256	3.06236682167253	0.148302561135167	0.806157495648268	0.925358561244123
Merged-chr10-19941353-4	chr10	19941266	19941466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	6840.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	6.93331963867942	6.80664120368907	6.48605303804384	6.8140357560197	6.28204067309372	6.22729847779941	6.31092089556273	6.17828793894781	-0.763792566930229	0.00050786196228228	0.00780758242187698
Merged-chr7-97075194-4	chr7	97075105	97075305	+	849.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6546.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	3.94904769797567	3.75117020011264	3.80130264308223	3.85523396602083	3.9216332112996	3.80992222221727	3.88566335452376	3.99289031500694	0.18394575421864	0.671285359470721	0.864616305890251
Merged-chr16-91841628-4	chr16	91841535	91841735	+	960.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 19 of 28)	intron (NM_001110275, intron 19 of 28)	89995.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	5.11395734987284	5.09895414260909	5.17713072666396	5.18423893492011	5.02838530464876	4.92580947539882	5.18135904574688	4.78602502909759	-0.297941782503988	0.336095046436727	0.646244323954596
Merged-chr19-55683929-4	chr19	55683843	55684043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	MTD|LTR|ERVL-MaLR	18261.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	6.36725828568821	6.51422191188938	6.63143368666887	6.35853634470546	6.43911900140924	6.39038854333824	6.45713739695773	6.58143470977195	0.00551241174704335	0.979521825814909	0.99269129061727
Merged-chr5-108105692-3	chr5	108105591	108105791	+	861.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152817, intron 16 of 16)	intron (NR_152817, intron 16 of 16)	26929.0	NM_001347383	73130.0	Mm.363960	NM_028876	ENSMUSG00000063406	Tmed5	3110020O18Rik|4432412D15Rik|p24gamma2	transmembrane p24 trafficking protein 5	protein-coding	3.2829492442558	3.3847710101054	3.40363272951725	3.46168741335165	3.70229639837683	3.4575299033156	3.49968364665293	3.51176532749668	0.538280122742981	0.281262016544811	0.593350676368524
Merged-chr6-92127033-4	chr6	92126901	92127101	+	897.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347342, intron 2 of 14)	intron (NM_001347342, intron 2 of 14)	34568.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	4.76676494391491	4.43957719978783	3.94705462144307	4.65011673357927	4.28827369586323	4.00673209485177	4.27893648588692	4.33892145929945	-0.617989592743217	0.157410204615143	0.443928085673017
Merged-chr7-81862101-3	chr7	81861987	81862187	+	952.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291282)	promoter-TSS (NM_001291282)	-600.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	4.15158494636358	4.05136641021282	3.92107099425667	4.29012846946993	3.61121069644266	4.04313469552611	3.9048283634966	3.8134862823067	-0.771887005126215	0.0875187256519974	0.322604628336795
Merged-chr12-112588689-4	chr12	112588595	112588795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198411)	promoter-TSS (NM_198411)	-89.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	6.16780427054383	6.31177007874917	6.1103621028464	5.68328036303981	6.08232116975962	6.28504161477188	5.79006270737578	5.68338550580003	-0.146385534918227	0.606575961042424	0.829492720591086
Merged-chr11-90002882-4	chr11	90002776	90002976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008796)	promoter-TSS (NM_008796)	18.0	NM_008796	18559.0	Mm.5062	NM_008796	ENSMUSG00000020553	Pctp	PC-TP|StarD2	phosphatidylcholine transfer protein	protein-coding	7.44767013749961	7.58747153680435	7.23218715861738	7.63503265442021	7.26270074598598	7.26712286353398	7.77074200280261	7.04571834491613	-0.168492987438577	0.442923037975734	0.729629169998677
Merged-chr4-45012560-4	chr4	45012481	45012681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163284)	promoter-TSS (NM_001163284)	-169.0	NM_173399	230119.0	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	9.45304539598767	9.50787640021356	9.16019604422972	9.3385164947622	9.39785350260198	9.77759436856208	9.38777732524468	9.28250735303943	0.126015565991257	0.454745421519049	0.738513868860901
Merged-chr9-56104468-4	chr9	56104366	56104566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	14490.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	6.31730038234715	6.63545441051013	6.17696376586384	6.51616600364979	6.52755968727916	6.68861386444556	6.61842653202173	6.40600217831714	0.186512745440529	0.407445567239039	0.703699513030053
Merged-chr11-51916766-4	chr11	51916676	51916876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50855.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	6.95378086273003	6.98538035545331	6.76419849126668	6.677586290984	7.04572452438656	7.0397267241401	7.00497538097521	6.61957919782487	0.13828366633275	0.513826288793537	0.77667533255543
Merged-chr11-54884607-4	chr11	54884504	54884704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	18221.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	6.63681978276622	6.42274729199413	6.90006452568133	6.69878656311138	6.46941448157425	6.56135543099642	6.45850913269312	6.85730390601517	-0.116739015500608	0.605013214889791	0.828684273147198
Merged-chr14-14905061-4	chr14	14904923	14905123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195229, intron 22 of 34)	intron (NM_001195229, intron 22 of 34)	84208.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	5.58388399312117	5.92083533247469	6.41328423010543	6.21243512259429	5.80670872036551	5.79230635648365	5.55685389167715	5.91349999368433	-0.48024322113833	0.0933721084528295	0.334219737655465
Merged-chr16-91030963-4	chr16	91030877	91031077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152264, intron 7 of 17)	B1F1|SINE|Alu	13402.0	NM_026110	67367.0	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	5.30107584962252	5.44160353511921	5.23998587399542	5.47071162754877	5.49014294554139	5.35018499088841	5.18239554751684	5.06702557924395	-0.150600003897244	0.610954937674053	0.832083146943371
Merged-chr14-27249394-2	chr14	27249294	27249494	+	923.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 1 of 10)	intron (NM_027871, intron 1 of 10)	11384.0	NM_027871	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	3.23343072986869	3.36570857345897	3.34816171277812	3.54988313533332	3.2243953345084	3.34405850375601	3.03476616685084	3.39975243562915	-0.491520624148575	0.373523073641634	0.677113210162732
Merged-chr19-12592102-4	chr19	12591984	12592184	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015503, intron 1 of 1)	intron (NR_015503, intron 1 of 1)	4482.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	4.8214955462344	5.03297256572395	5.02644617328264	4.62401374490938	4.51156208230459	4.75741614668243	4.90452313574252	4.95860582934599	-0.182337159101949	0.606747721806455	0.829607285920736
Merged-chr12-24741780-3	chr12	24741671	24741871	+	860.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	33517.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	3.48289254169125	3.45164549669234	3.22925645967057	3.09975736240354	2.93290637143332	2.94757819451686	3.03808905741786	3.04688391616013	-1.34943310809328	0.024832898800686	0.147753983426735
Merged-chr16-90426329-4	chr16	90426215	90426415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 1 of 10)	intron (NM_015755, intron 1 of 10)	39918.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	6.29777688928866	5.67961496675893	6.2086012360706	6.26756044753999	6.05347183155081	6.0912048220609	5.83656626297428	6.1269673232355	-0.167900170738871	0.520264677907545	0.780730751415725
Merged-chr7-110919924-2	chr7	110919824	110920024	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194464, intron 10 of 20)	L1MB3|LINE|L1	14939.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	3.07599943596207	3.29367075453803	3.20317694903641	3.23982881273481	3.37306709326708	3.43164376711626	3.25022645276355	3.31706151902123	0.493760356518061	0.349286995740655	0.656818637583855
Merged-chr1-166409306-4	chr1	166409206	166409406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175170, exon 2 of 6)	5' UTR (NM_175170, exon 2 of 6)	522.0	NM_001142948	71592.0	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	6.46316549745059	6.88674023986067	6.66085011995765	5.7870969549365	6.39396639199424	6.65642435732404	6.00934975955429	5.47354991301172	-0.445453692405248	0.202345484792795	0.504792838289161
Merged-chr12-64966800-3	chr12	64966726	64966926	+	956.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177805, exon 1 of 20)	exon (NM_177805, exon 1 of 20)	1084.0	NM_177805	328108.0	Mm.138465	NM_177805	ENSMUSG00000035614	Togaram1	A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding	3.82589358302818	3.73063599387515	4.0659639508216	3.89049053880419	3.89565935342117	3.89238303075143	3.86204001723179	4.10624939401311	0.164770125929495	0.706125097255555	0.881879743016467
Merged-chr10-89436054-3	chr10	89435932	89436132	+	746.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079876, intron 2 of 10)	intron (NM_001079876, intron 2 of 10)	7935.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	3.10282722815454	3.04684915415784	3.15942815079853	3.4081342421482	3.04848257787669	2.80664282950102	2.97310247608611	2.98145263758325	-0.984108812303373	0.107347967668808	0.361382260156614
Merged-chr14-20105629-4	chr14	20105533	20105733	+	908.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22461.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	4.07064475045238	3.73361408064962	3.97775678315679	4.17693549100406	4.08327417874297	4.10000116498317	3.75340061759877	3.97540838567852	-0.0586457706604217	0.895463492143312	0.960896639740529
Merged-chr15-81585254-4	chr15	81585159	81585359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177821)	promoter-TSS (NM_177821)	-955.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	7.84588840409355	8.09516212971791	7.62452533044175	7.69383637568357	8.02453711344712	8.18071891592401	7.95151338018215	7.96409583598477	0.267027704822623	0.139490163536491	0.415290712329091
Merged-chr16-91931573-4	chr16	91931455	91931655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138597)	promoter-TSS (NM_138597)	75.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	6.94685923828208	7.03424927028639	6.52383267804878	6.70961396768296	6.7752225293771	6.63033236281525	6.80986800256385	6.8125153165039	-0.078528520639884	0.714253368625136	0.88574236951407
Merged-chr12-111302150-3	chr12	111302058	111302258	+	586.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183016, exon 28 of 37)	exon (NM_183016, exon 28 of 37)	31062.0	NM_033603	93835.0	Mm.197639	NM_033603	ENSMUSG00000021278	Amn	-	amnionless	protein-coding	3.42394708489384	3.63525186021197	3.29761647609265	3.71690096149821	3.39771750598444	3.71136461300841	3.81787475230927	3.59228962384149	0.29390706355107	0.57100761976408	0.810346745497796
Merged-chr3-107631747-4	chr3	107631636	107631836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153563)	promoter-TSS (NM_153563)	-26.0	NM_153563	229707.0	Mm.278643	NM_153563	ENSMUSG00000014601	Strip1	6330569M22Rik|6530401O14Rik|Fam40a	striatin interacting protein 1	protein-coding	7.21618310017292	7.41071990677772	6.50789927255606	6.91873308027132	7.38000844956659	7.29283775847767	7.2341550331374	7.22317192822417	0.312255738409962	0.180763770824575	0.477181528260466
Merged-chr5-121546755-4	chr5	121546657	121546857	+	933.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010765)	promoter-TSS (NM_010765)	-865.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	4.43061240555045	4.13097884873799	4.13095258026161	4.32149529038582	4.2222229614774	4.20619686183039	4.41047096390112	3.91950595746964	-0.14814454421248	0.718367149919586	0.887534808097726
Merged-chr1-36511793-4	chr1	36511714	36511914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053186)	promoter-TSS (NM_053186)	-53.0	NM_001331209	94218.0	Mm.256323	NM_053186	ENSMUSG00000001138	Cnnm3	Acdp3|Clp3|mACDP3	cyclin M3	protein-coding	8.14143479887883	8.15951100897913	7.90649012169452	8.16306371245592	8.25984934848695	8.18403918308261	8.2917719604868	7.79265542372349	0.0633086046123303	0.725465718747021	0.890921883682774
Merged-chr5-143465554-4	chr5	143465461	143465661	+	803.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 1 of 14)	ID_B1|SINE|B4	1068.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	3.63451221804123	3.93187766451527	3.84671638796988	3.59751311428972	3.87111809508163	3.80969495155551	3.73014066057891	3.89225277057537	0.227045487635081	0.618666116790496	0.836039000482598
Merged-chr7-48908917-4	chr7	48908821	48909021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27325.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	6.62639030813436	6.57485378936101	6.71546293731181	6.65307982020745	6.28565422593072	6.47751276242168	6.72279479963989	6.31497435405672	-0.272825762636514	0.212481467982277	0.517436225002987
Merged-chr15-86273513-4	chr15	86273416	86273616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 4 of 12)	intron (NM_145476, intron 4 of 12)	-4159.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	6.60431155513846	6.45420145025374	6.54388069744294	6.44988096545532	6.2525397728834	6.27162494596168	6.69953935109286	6.19678168394965	-0.20761169623432	0.3660151391024	0.670628902032787
Merged-chr2-158161787-4	chr2	158161634	158161834	+	877.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15342.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	3.86393690005238	3.76656423576287	4.06015515298115	4.48231011064408	3.70451349465781	3.75328113271442	3.99653487567409	4.10214170452234	-0.52632867027485	0.283002171444463	0.595195944960567
Merged-chr12-69486229-4	chr12	69486147	69486347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-10697.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	6.13966949997781	6.30823267803232	6.57600993187744	6.16102147369983	6.89133251353717	7.01121157323046	6.42539265056008	7.1197337591931	0.846864035833998	0.000491990877578519	0.00762206450857477
Merged-chr4-128670739-4	chr4	128670624	128670824	+	939.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	16022.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	4.28837775552401	4.38946891690834	4.1892288247811	4.84352918249084	4.58755694367821	4.64017697162402	4.31733550025909	4.58495930435642	0.133760659505784	0.744797197681911	0.899349861357637
Merged-chr1-133132884-4	chr1	133132778	133132978	+	838.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133819, exon 1 of 2)	exon (NM_133819, exon 1 of 2)	1712.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	3.95184184894931	4.38955465055751	4.23684630204144	3.9431812499604	3.90091853523051	3.90524402816763	3.98757570693839	4.50067446187817	-0.110301863827278	0.809273222077164	0.926376505400415
Merged-chr11-69409535-4	chr11	69409438	69409638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017426, intron 1 of 22)	intron (NM_001017426, intron 1 of 22)	4137.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	7.87719923522183	8.32110543196921	7.76003429230259	7.7077022790734	8.27949514669502	8.37972122264286	8.01554610753066	8.11242129294038	0.342219727495421	0.087391004028789	0.322459895085463
Merged-chr14-47375214-4	chr14	47375136	47375336	+	822.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145953, intron 1 of 5)	ORR1A2|LTR|ERVL-MaLR	1376.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	3.32177632611356	3.53521578072671	4.03942004981624	3.27869700977327	3.6618501411364	3.56982957162709	3.49879987714825	4.03665162420655	0.407788501328476	0.460497043055494	0.742687499720882
Merged-chr7-141477334-4	chr7	141477176	141477376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252588, intron 1 of 7)	MIRc|SINE|MIR	896.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	4.7611326197116	4.84924904570208	5.04818848001084	4.98082423163605	4.77356142522483	5.01394059128069	5.085430435321	4.94488229070141	0.0638717303433684	0.843187346548604	0.940459539910433
Merged-chr14-64834699-4	chr14	64834619	64834819	+	953.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 6 of 9)	intron (NM_177338, intron 6 of 9)	115138.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	5.46885083597173	4.8895836217069	5.36360914528616	5.44751286744589	5.16970977849907	5.11752552158253	5.12772365847436	5.04728605625489	-0.368096734372527	0.242332481640349	0.553064759224008
Merged-chr2-32507305-4	chr2	32507214	32507414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28045.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	6.29859891073735	6.53314659222801	6.89425470736312	7.07635163101291	6.46376950930173	6.33117208209089	6.56698549863627	6.68707617719436	-0.334327438120606	0.186412018364611	0.484379989602257
Merged-chr14-103020978-3	chr14	103020884	103021084	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	12819.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	3.94743342755206	3.90297858649991	4.50380491054205	4.37901587724221	4.33808721668729	4.13048960082213	4.91678546485988	4.05612939976952	0.459420578095174	0.332569644803636	0.643531688755946
Merged-chr12-54820865-4	chr12	54820820	54821020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25258.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	5.6764861303487	5.62016073482113	5.79365330002887	5.47897249383698	5.33937417441504	5.35598948733898	5.59934305028689	5.51829689894887	-0.311385527833574	0.258136214354252	0.569968613835775
Merged-chr9-7880164-4	chr9	7880071	7880271	+	906.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D_MM|LTR|ERV1	-7001.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	4.41334865994837	4.3973671962082	3.69105270344408	3.0673731605236	5.31026681817236	4.63558359920438	4.79462741674786	4.17535262672308	1.62711419018209	0.0697159215957548	0.282527304900036
Merged-chr3-88191277-4	chr3	88191162	88191362	+	983.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13477.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	4.72527740584253	5.38277456623313	4.80651192761849	4.8446056505861	5.26200173914547	4.90328333210348	4.89493698922777	4.72298609900647	0.00850994136638141	0.98133906624624	0.993340823907352
Merged-chr17-29435600-4	chr17	29435485	29435685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1N2|LTR|ERVL-MaLR	-55460.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	6.94826240481777	7.12892602339149	7.44544954469588	6.80306101953254	7.26082079995462	7.21806885438551	7.48757107146252	7.17816226281347	0.271343396042216	0.209928182187593	0.514484230514723
Merged-chr13-49178072-4	chr13	49177980	49178180	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-9467.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	5.62063643051824	6.03522342641352	5.07483345624627	4.79605007604699	5.8760830044146	6.26949668468048	5.66866845766126	5.38859314404489	0.610003210281591	0.115080531833791	0.375421292240588
Merged-chr10-42487083-4	chr10	42486980	42487180	+	743.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8515.0	NM_145743	215951.0	Mm.89646	NM_145743	ENSMUSG00000038302	Afg1l	CG8520|Lace1	AFG1 like ATPase	protein-coding	3.32337276098262	3.47146346729859	3.18936630442593	3.48727428019561	3.45741628772856	3.72878491888183	3.86824377652012	3.65879370567086	0.961596533763357	0.0628894984677694	0.265883322133367
Merged-chr19-61199772-4	chr19	61199667	61199867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23458.0	NM_001177513	633057.0	Mm.426097	NM_001177513	ENSMUSG00000094649	Gm7102	EG633057	predicted gene 7102	protein-coding	9.16946759474073	8.9635485775888	9.24462899887218	9.34261761808916	9.05953716275892	9.14615739739306	9.22503586535008	9.46242103133429	0.0504381312996641	0.758617590985924	0.905219520105318
Merged-chr13-46735448-4	chr13	46735349	46735549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7600.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	5.09159237549468	5.42078212962959	5.26191885852415	5.44050347123013	5.47279396962157	5.19696918858526	5.49180186199824	5.54134039222621	0.197374460920794	0.497073474798208	0.766922288608437
Merged-chr1-89891622-4	chr1	89891504	89891704	+	945.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178119, exon 18 of 18)	3' UTR (NM_178119, exon 18 of 18)	39572.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	4.91112362768977	4.93183251035652	5.61277617437766	5.14404332857185	4.42863047121381	4.76724929316099	4.77609155463527	4.87205296896904	-0.931486257548655	0.0108057500706454	0.0835207388726751
Merged-chr17-34198391-4	chr17	34198284	34198484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010724, exon 1 of 6)	5' UTR (NM_010724, exon 1 of 6)	189.0	NM_010724	16913.0	Mm.180191	NM_010724	ENSMUSG00000024338	Psmb8	Lmp-7|Lmp7	proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)	protein-coding	6.03504852620274	5.92837272376658	5.57610210252441	5.78039073225586	5.96726760491182	5.99015806373742	5.94322046619588	5.78632766958041	0.140883362112209	0.577259015524179	0.813992619873917
Merged-chr1-131760271-3	chr1	131760204	131760404	+	947.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177243, intron 12 of 20)	intron (NM_177243, intron 12 of 20)	16282.0	NM_177243	320718.0	Mm.482704	NM_177243	ENSMUSG00000042268	Slc26a9	E030002L01Rik	solute carrier family 26, member 9	protein-coding	4.27158393922511	3.9061054387153	3.97334677297226	3.48337041298478	3.28071720037079	3.37725289980699	3.44809431969378	3.32830785595953	-1.88955598178892	0.000782740908357403	0.011045740506735
Merged-chr7-24610722-4	chr7	24610624	24610824	+	860.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102613)	promoter-TSS (NM_001102613)	-604.0	NM_001102613	232970.0	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	3.70817900505628	3.91345992297029	4.0038975710534	3.98961860368895	3.51544907753801	3.82795406044218	3.51944472640217	4.04444634998812	-0.503293122828771	0.298787706940104	0.611044683013638
Merged-chr15-94688283-4	chr15	94688201	94688401	+	836.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178789, intron 2 of 7)	intron (NM_178789, intron 2 of 7)	59116.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	3.85127253287732	3.93408805047145	3.73719760031309	4.13018804928261	4.15449028067559	4.08010467039734	3.88980644786663	4.45078011895625	0.583846224509867	0.195605351054253	0.496416489560049
Merged-chr15-97237152-2	chr15	97237052	97237252	+	802.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-9955.0	NM_172293	239647.0	Mm.130036	NM_172293	ENSMUSG00000044250	Pced1b	Fam113b	PC-esterase domain containing 1B	protein-coding	3.25102640273341	3.1394651389999	2.99429935479972	3.29344124091358	3.15170204194014	3.53105109173878	3.29563159977763	3.41377746464308	0.61043096228936	0.271562815201987	0.583247666197459
Merged-chr1-138288943-4	chr1	138288843	138289043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177397, exon 3 of 3)	3' UTR (NM_177397, exon 3 of 3)	15205.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	5.49603997266411	6.25814018162839	5.9785986986278	6.373228504597	5.47175366701159	5.40893389098479	5.79183672627076	5.88705979384509	-0.694175929520241	0.0239242573562258	0.144167347981612
Merged-chr2-160212539-4	chr2	160212458	160212658	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114936.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	4.77026389200759	5.11767406444464	4.92293015844054	5.46103576971514	4.76160451360193	5.19848148740159	4.53233751092324	4.84600125923704	-0.51392605711829	0.166970672989181	0.458465668815219
Merged-chr1-105094814-2	chr1	105094714	105094914	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-261193.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	2.38385229784153	2.62768404854727	2.46028681066098	2.22703315261427	2.69478446218758	2.95674529840151	2.7176775539542	2.66505097866452	1.78917154604877	0.011496569017717	0.0870917716168665
Merged-chr2-52772617-4	chr2	52772516	52772716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-30467.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	5.88246606942241	6.23831576708533	6.23393009760721	5.43560541099467	5.91464017162091	6.19388382325878	6.02950621940641	5.99276866858251	0.0945534620335221	0.745534911637912	0.899568230331321
Merged-chr16-91785859-4	chr16	91785750	91785950	+	738.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 4 of 15)	intron (NM_001110276, intron 4 of 15)	56479.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	3.48552974680944	3.68671981570693	3.61181477671117	4.02844659609077	4.06162635816204	4.00407287039136	3.71243403729685	4.14374353339194	0.704181165039985	0.157333015647598	0.443883818312874
Merged-chr7-45362947-3	chr7	45362872	45363072	+	903.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029741, intron 1 of 29)	intron (NM_029741, intron 1 of 29)	-3189.0	NR_015480	50994.0	Mm.389897	NM_016664	ENSMUSG00000091510	Mtag2	MAG	metastasis associated gene 2	ncRNA	3.19568133966492	3.52196558216284	2.9855287737717	2.97373071082708	3.84519275084504	3.55108797255861	3.30770022229795	3.43197636936417	1.28043493660279	0.0272155822704555	0.157136431734973
Merged-chr1-156803421-4	chr1	156803351	156803551	+	897.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001159965)	TTS (NM_001159965)	-35572.0	NM_028333	72713.0	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	3.99251206900667	4.36456639803875	4.98517705658718	4.6244425893097	4.36184805989388	3.99446895116265	4.61678112500957	4.56135437672378	-0.307452304387278	0.501584316236703	0.769279682081713
Merged-chr8-105218159-3	chr8	105218063	105218263	+	892.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001161457)	TTS (NM_001161457)	-7025.0	NM_145604	234678.0	Mm.27186	NM_145604	ENSMUSG00000031889	D230025D16Rik	BC006874|Lin10	RIKEN cDNA D230025D16 gene	protein-coding	3.91130545103875	3.87492606787373	4.34892531468505	3.76274554194793	3.70073199746005	3.51118803140263	3.74547489354606	3.64737740600535	-0.967574516110157	0.0488076762906156	0.22834767915668
Merged-chr5-90685965-4	chr5	90685857	90686057	+	967.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45430.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	5.39802001065358	4.80489515972449	5.9565725548703	6.12196814629941	5.33896889191488	5.32072554846896	5.11570324250675	5.13735632431891	-0.772339957888008	0.0430892966291003	0.21121142225477
Merged-chr11-30196014-3	chr11	30195910	30196110	+	812.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175836, intron 1 of 34)	intron (NM_175836, intron 1 of 34)	2247.0	NM_009260	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	3.73731982854295	3.78073740138798	3.91455498024631	3.90244737730633	3.48409997821471	3.26006200139864	3.2101768747045	3.21831486696307	-1.81423219842847	0.000955129678402512	0.0129717945771823
Merged-chr6-34608805-4	chr6	34608697	34608897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 1 of 13)	intron (NM_001347100, intron 1 of 13)	10293.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	6.42276942224885	6.58018100164331	6.59013536207236	6.53569750184852	6.50235958109796	6.11212559747359	6.89377825857298	6.56977254409744	0.0247515171878369	0.917178300269322	0.969459238985449
Merged-chr1-44064825-2	chr1	44064725	44064925	+	972.9166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37616.0	NM_029368	75623.0	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	3.49355084387749	3.37479324602564	3.49399855390319	3.6063970992771	3.95611803362004	3.48722817464634	3.58986340412389	3.70363886028408	0.639917248642331	0.198863426035696	0.500526867107314
Merged-chr9-99112302-4	chr9	99112190	99112390	+	921.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	27921.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	4.28337299477007	4.21310029764523	3.89247454098722	4.10754977423657	4.21966623885728	4.45350710045337	4.30558235264895	3.94611779085573	0.276725302806083	0.506584450247886	0.7723270012871
Merged-chr15-31453673-4	chr15	31453572	31453772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145852)	promoter-TSS (NM_145852)	17.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	7.8287681984653	7.66381607227562	7.83742063052984	8.01699540321805	7.4720786619487	7.57176084589608	7.63588167924352	7.53627809238957	-0.390624095585283	0.0251130384814086	0.148860839945718
Merged-chr10-80295824-4	chr10	80295704	80295904	+	944.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	3295.0	NM_001310726	20054.0	Mm.643	NM_009091	ENSMUSG00000063457	Rps15	rig	ribosomal protein S15	protein-coding	4.62184387926607	4.86629492411297	4.66126445284049	4.45371678444476	4.70805236703286	4.44296813040073	4.29524803308995	4.80184282678099	-0.146156186549	0.698319004683245	0.878303994693932
Merged-chr3-90216022-2	chr3	90215922	90216122	+	902.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293741, intron 1 of 7)	B2_Mm2|SINE|B2	2307.0	NM_001293741	68328.0	Mm.29355	NM_026677	ENSMUSG00000027935	Rab13	0610007N03Rik|B230212B15Rik	RAB13, member RAS oncogene family	protein-coding	3.43673870371793	3.00514758875565	3.04498942501208	2.86994216321704	3.07430088924585	3.34219984514371	3.09752999639788	3.33485454066889	0.453987050065198	0.442034546624716	0.728863440377147
Merged-chr17-35200216-1	chr17	35200116	35200316	+	577.0	f0_balb.idr	exon (NM_001278601, exon 3 of 3)	exon (NM_001278601, exon 3 of 3)	1791.0	NM_013693	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	3.64211229413952	3.75235059631045	3.74501028868816	2.83843223305443	3.57205444013759	4.09672974756539	3.45896352636085	3.40894146243768	0.326650543886073	0.60027531429663	0.826760171717672
Merged-chr7-73596609-4	chr7	73596489	73596689	+	957.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-38194.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	5.00486156142083	5.217433727732	4.82548364161854	4.76821914162124	5.19701588869372	4.8808721570318	5.13786804945265	4.78338523885534	0.122719442328132	0.716056028075722	0.886371813543908
Merged-chr3-115692620-4	chr3	115692408	115692608	+	981.011902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22547.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	4.05907592877493	3.99028149156657	3.89842088858078	4.10353556468784	4.33107738695487	4.18460895554214	4.56755451800411	4.36982553630638	0.860988262045219	0.0323096323129966	0.17597117747393
Merged-chr19-5088020-4	chr19	5087937	5088137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026553)	promoter-TSS (NM_026553)	-501.0	NM_026553	68090.0	Mm.44202	NM_026553	ENSMUSG00000024875	Yif1a	5330422J23Rik|54TM|Yif1|Yif1p	Yip1 interacting factor homolog A (S. cerevisiae)	protein-coding	6.26185003671807	6.55970204133372	5.55495739833158	5.97302069237575	6.35461059137585	6.49326053217522	6.11367774804839	6.43297072221613	0.327249140842408	0.251725463498438	0.563038266862185
Merged-chr15-67147556-3	chr15	67147454	67147654	+	974.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 2 of 8)	intron (NM_009177, intron 2 of 8)	29328.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	4.2524673012525	4.47750551329502	4.75725732062642	4.1773200792227	3.76263461435444	3.76887080783811	4.35890177151483	4.0079074280341	-1.10339508790317	0.0177047906288909	0.117853669893746
Merged-chr11-75588127-4	chr11	75588031	75588231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008850)	promoter-TSS (NM_008850)	52.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	7.2174092036964	7.28233705070134	6.9273774357456	7.11710152980717	7.08868724503734	7.33996624552116	7.16075233675993	7.08848717587955	0.0349291783764505	0.855547443110313	0.945674414504706
Merged-chr8-116946581-6	chr8	116946465	116946665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177700, intron 1 of 3)	intron (NM_177700, intron 1 of 3)	3172.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	5.29678871642691	4.96838978800171	5.46447656816361	5.513755358676	4.82796253401232	5.21179710547261	5.32895602357409	5.35203784886295	-0.272675151631311	0.405581651927187	0.702341680428793
Merged-chr2-132253311-4	chr2	132253187	132253387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011045)	promoter-TSS (NM_011045)	-107.0	NM_011045	18538.0	Mm.7141	NM_011045	ENSMUSG00000027342	Pcna	-	proliferating cell nuclear antigen	protein-coding	8.65498876662499	8.91177057848595	8.3959617115468	8.52744491515279	8.64397527476361	8.84315937356492	8.75493396756687	8.55885892749267	0.0834888417138761	0.629335112572121	0.842124810184297
Merged-chr1-45817089-3	chr1	45816991	45817191	+	779.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028599, intron 13 of 20)	intron (NM_028599, intron 13 of 20)	21925.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	3.97111930096025	3.64063294120868	3.62252716802886	3.67723617550644	3.83493690663718	4.09166348227022	3.49265936221759	3.83150364865162	0.286862949684025	0.551303241534415	0.798852111664389
Merged-chr17-32143357-4	chr17	32143272	32143472	+	920.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008716, exon 24 of 33)	exon (NM_008716, exon 24 of 33)	23480.0	NM_008716	18131.0	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	4.61676942068609	4.75184456565692	4.48600738480949	4.56047106716274	4.84477188791498	4.87169331977839	4.85672449031026	4.94306768582848	0.569755311233999	0.0851444025210618	0.317652572307073
Merged-chr5-103732785-4	chr5	103732625	103732825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21437.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	5.59454621735136	6.0169450738261	5.65160504839552	5.40813626520913	5.8683039572413	6.14052458157466	6.20275839679474	5.96184187451931	0.593428521780042	0.0302722041609298	0.168247459980544
Merged-chr13-60674481-4	chr13	60674356	60674556	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	72245.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	5.43509853484816	5.18315387045042	6.0877179793996	6.36812326927	5.40817159473787	5.10998386399021	5.57813170552769	5.77643061337941	-0.627341487305582	0.0910134458600723	0.329681733479597
Merged-chr12-70111976-4	chr12	70111883	70112083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104398)	promoter-TSS (NR_104398)	52.0	NM_001286080	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	6.27873631218571	5.96435455665501	6.31611248452983	6.34080008766064	6.03020930752429	6.07405022016146	6.44995087318054	6.25683306402953	-0.0438889105347477	0.856989915158619	0.946159157665131
Merged-chr2-148681555-4	chr2	148681466	148681666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355689, intron 1 of 5)	intron (NM_001355689, intron 1 of 5)	446.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	5.76818353517309	5.69100120565772	5.95324052946788	5.53956720017981	5.6976246885675	6.105784066402	6.17245038288901	5.66206269573821	0.307932985399387	0.265737073194625	0.577430751684226
Merged-chr12-98370960-4	chr12	98370865	98371065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102330.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	5.80028281496768	5.2564458977062	5.59150094122094	5.75186410379963	5.44904469688533	5.42021618728628	5.25000426272704	5.20556053273918	-0.491785114564741	0.0950820199123987	0.337391010417312
Merged-chr7-100952213-4	chr7	100952095	100952295	+	991.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	12171.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	4.73525429143381	4.6256307698238	4.73603177115378	4.89325435240363	4.81038006175237	4.20509287439269	4.9763774274922	4.39761649469633	-0.241031167784807	0.536657385990839	0.790562048448667
Merged-chr10-25285247-4	chr10	25285136	25285336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 2 of 7)	intron (NM_018747, intron 2 of 7)	13927.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	6.03131710713058	5.53454047184504	5.78230444756633	6.21477605579163	6.02080717705499	5.80000192724376	5.87208157794737	6.08839195838125	0.0332448672513543	0.904441638833453	0.964559678221358
Merged-chr1-143740163-4	chr1	143740092	143740292	+	902.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038594)	promoter-TSS (NM_001038594)	-255.0	NM_001038594	69367.0	Mm.272727	NM_023505	ENSMUSG00000018196	Glrx2	1700010P22Rik|AI645710|Grx2	glutaredoxin 2 (thioltransferase)	protein-coding	4.42739204000863	3.96532900548148	4.34917189940414	4.45684029354124	4.14932487508085	3.98158328482393	4.01004369546581	4.38640263566598	-0.437433897746543	0.303451872308611	0.616087190708652
Merged-chr17-24669635-4	chr17	24669543	24669743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183149)	promoter-TSS (NM_183149)	-44.0	NM_001348231	213753.0	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	7.76062809129658	8.28863968567173	7.35409772922491	7.86864722290569	7.9052937064085	8.10610019494494	8.22329632647673	7.90170445465596	0.224958966818312	0.311329246161586	0.623350335092419
Merged-chr7-67369816-4	chr7	67369720	67369920	+	805.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 1 of 11)	intron (NM_001357324, intron 1 of 11)	3038.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	3.88878478578739	4.78606522453707	4.16356313014626	3.71100836841433	4.53859152955481	4.5641870282404	4.63046439753558	3.94652397802089	0.552461734545628	0.272718975674224	0.584138684652025
Merged-chr16-64941980-4	chr16	64941900	64942100	+	948.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008310, intron 2 of 2)	RLTR14|LTR|ERV1	89999.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	4.57737633214787	5.07564138386874	4.57809682132738	4.37365833918884	5.9458478205156	5.78319346770095	5.60375564877676	5.03931592390641	1.79496121401075	8.6338241775582e-07	3.06660165236734e-05
Merged-chr18-77954583-3	chr18	77954497	77954697	+	961.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 4 of 43)	intron (NM_001195633, intron 4 of 43)	16130.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	3.69500850061742	3.43984024813507	3.881760845552	3.32626517799474	4.46520880961324	4.54134042803905	4.91588554041233	4.47935980536034	2.7458343340714	9.55717187768873e-10	6.16186537211962e-08
Merged-chr2-21179310-4	chr2	21179179	21179379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26086.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	5.01042250723972	4.96509119782556	5.26212736781209	5.52543705514664	4.82807598199136	5.04109138952967	4.76218988269609	5.04204881214476	-0.597074034291087	0.0767016795883629	0.299366609169276
Merged-chr9-47644454-4	chr9	47644345	47644545	+	864.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	L1MC4a|LINE|L1	114093.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	4.35499132898258	4.4536472747101	4.26577303925262	4.70682874727052	4.12978821798373	4.0760153597313	4.29245630598981	4.62484774300701	-0.413479269603525	0.317396977373712	0.629303605918758
Merged-chr7-80179494-3	chr7	80179361	80179561	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7380.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	3.59094936936828	3.45902855204003	3.51019358696114	2.8703929917331	5.38729696814286	5.19429600716426	5.22789455871113	5.41337174411142	5.58447348532002	7.73080619616704e-28	7.24040860838123e-25
Merged-chr5-112279578-4	chr5	112279483	112279683	+	871.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	2892.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	4.51047859148275	5.24423760463573	4.37304492475138	4.3057737607692	4.8565931821791	4.88593792209486	4.4010611301473	4.46391364789478	0.0106547904541391	0.980445949139219	0.99281244474172
Merged-chr9-65885088-4	chr9	65884990	65885190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170907)	promoter-TSS (NM_001170907)	83.0	NM_001170907	56404.0	Mm.208379	NM_019797	ENSMUSG00000032386	Trip4	4930558E03Rik|ASC-1|Asc1|BB191711	thyroid hormone receptor interactor 4	protein-coding	6.55832384983629	6.06866411954727	6.08750805347397	6.20131032189917	6.04773360502861	5.9014235924587	6.42013084550866	6.10418899612137	-0.164960930029883	0.518327742888366	0.779459059723581
Merged-chr2-59228982-7	chr2	59228869	59229069	+	871.569031	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	MTC|LTR|ERVL-MaLR	68119.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	2.96931598853345	2.69652245671681	2.96966063358187	3.13377944046189	2.89830645448089	3.14388215156283	3.29539189036931	3.30805006635525	0.829366573295981	0.186375210412737	0.484319707274952
Merged-chr17-30570355-4	chr17	30570250	30570450	+	986.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172618, intron 1 of 11)	MTD|LTR|ERVL-MaLR	5937.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	5.15842281266833	5.19613402776156	4.86664163685806	5.16236134498711	5.33297429742634	5.42679785679962	5.34293940365035	5.25022907009946	0.41886685383122	0.153935412926463	0.438945948108834
Merged-chr5-127607726-4	chr5	127607613	127607813	+	912.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 2 of 7)	intron (NM_133895, intron 2 of 7)	9679.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	4.7244101807167	4.26238364543329	4.82707213514426	5.28186412369478	4.31123167324397	4.22923767282922	4.33970812416044	4.20749132495088	-1.27312481948133	0.00295852389041651	0.0316333633630572
Merged-chr5-24051940-2	chr5	24051843	24052043	+	845.0	f0_balb.idr|f1_balb.idr	Intergenic	RMER2|LTR|ERV1	-21253.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	3.64468897880224	3.98545983278226	3.98700116782803	3.66978664744645	3.14619481056501	3.06880926206266	2.94670382164716	2.9529874038238	-3.23134910489039	3.89938919449883e-06	0.000119019992913907
Merged-chr2-80038671-4	chr2	80038563	80038763	+	776.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355142, exon 1 of 15)	5' UTR (NM_001355142, exon 1 of 15)	239.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	3.87805404944023	3.53748626838178	3.87860692377402	4.13821927668059	3.96942943078965	3.94728803252198	3.86261551503716	4.06370435102659	0.197293481943863	0.672342382007058	0.865119100634158
Merged-chr7-141379747-4	chr7	141379650	141379850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12410.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	6.42856170348486	6.70744705730901	6.23828479822616	6.28190985622513	6.60152435673229	6.75603473301007	6.65184441035993	6.68118788601556	0.360206343630587	0.10373001451202	0.353967050335638
Merged-chr8-105345765-3	chr8	105345678	105345878	+	886.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	2192.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	3.30933946804727	3.13855767041287	3.25536534282806	3.27404547396449	3.06972255105882	3.12034954490773	2.93438378912388	3.41002472582458	-0.394878869645687	0.489018394827996	0.761571656414145
Merged-chr6-128334548-3	chr6	128334450	128334650	+	841.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011657, exon 3 of 11)	exon (NM_011657, exon 3 of 11)	21301.0	NM_011657	22158.0	Mm.291783	NM_011657	ENSMUSG00000001521	Tulp3	2310022L06Rik|AI316887	tubby-like protein 3	protein-coding	3.91016487169412	3.92010124700977	3.81010226418992	4.01872432231527	3.7473242333509	3.87528545585889	3.74242071562244	4.04521988903275	-0.201760165480578	0.649102131863278	0.852553662722053
Merged-chr12-87470466-4	chr12	87470405	87470605	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025507, intron 1 of 13)	MTB_Mm|LTR|ERVL-MaLR	1794.0	NM_025507	66354.0	Mm.271174	NM_025507	ENSMUSG00000021039	Snw1	2310008B08Rik|AW048543|NCoA-62|SKIP|Skiip	SNW domain containing 1	protein-coding	4.5393393219951	4.54950148199282	4.49894627243785	4.38023728422179	4.45616374702256	4.71123990152239	4.66977092500425	4.45372234967421	0.196882787808822	0.582916098049779	0.816821881334209
Merged-chr4-59467307-1	chr4	59467207	59467407	+	676.0	f0_balb.idr	Intergenic	Intergenic	-28674.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	3.27866106631674	3.25492585577632	3.53145303969393	3.14985202964282	3.12468362431465	3.0005871694436	3.32018059684621	3.09820624211915	-0.621202755788709	0.275683918488502	0.587600108821473
Merged-chr7-27333400-2	chr7	27333300	27333500	+	742.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310678, exon 1 of 23)	exon (NM_001310678, exon 1 of 23)	248.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	2.57192777356922	2.31101109785354	2.28319885372831	2.67930776681256	2.49023780095039	2.74189557907081	2.62589819887065	2.75215899909067	0.890205968138743	0.237966386650554	0.548250831377238
Merged-chr7-90055007-4	chr7	90054916	90055116	+	981.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25857.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	4.61236551810408	4.68830042845395	4.6935937908345	4.96569346165239	4.83996610883258	4.41376775790893	4.70981024101151	4.93746719330705	-0.0358107038357988	0.920781654091221	0.970622554300086
Merged-chr1-184174632-4	chr1	184174534	184174734	+	835.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140253.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	4.07706201531513	3.69650888358558	3.55976952019535	3.97463910367047	3.57356240956493	3.74081178129903	4.216905776994	4.03178228947587	0.179915191495979	0.718468251557831	0.887579709565285
Merged-chr6-70856150-4	chr6	70856051	70856251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313918, intron 1 of 2)	Lx9|LINE|L1	11636.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	5.51049535686028	4.83839377292994	5.26289739106276	4.85334194644066	5.58349531464251	5.31043841217058	5.20605883636751	5.31880761812236	0.439336741848065	0.185695366034	0.483585287292957
Merged-chr1-16105810-4	chr1	16105730	16105930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133832)	promoter-TSS (NM_133832)	-52.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	6.55585645018401	6.6054717401206	6.604560166528	6.96399785632635	6.25556641042617	6.42556806659053	6.64593326395515	6.50294814306585	-0.364315284992745	0.112617290382267	0.371110468153675
Merged-chr4-120826893-4	chr4	120826763	120826963	+	953.2416380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048168, intron 1 of 9)	intron (NM_001048168, intron 1 of 9)	-1122.0	NM_008692	18046.0	Mm.318389	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	4.39424097504957	4.21229266040571	4.59581882341794	4.49177799292203	4.18955886116661	4.60991509003318	4.67964536656744	4.25476837983625	0.0248649752203451	0.949860641996095	0.98210584580111
Merged-chr6-120454259-4	chr6	120454172	120454372	+	962.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8925.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	5.25771553392505	4.85008117495618	4.97991535052758	5.16069108873012	4.8764430637213	4.80294226037234	4.84843873407207	5.16884984129348	-0.282330618661111	0.387739619416446	0.688595767725629
Merged-chr16-45408808-3	chr16	45408741	45408941	+	754.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010818, intron 1 of 5)	intron (NM_010818, intron 1 of 5)	212.0	NM_001358443	17470.0	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	3.33046395422426	3.00689277716623	3.16734655762386	3.32299893063316	2.96985181593164	3.08863792851939	2.97086257508952	3.3289798534409	-0.481043343238383	0.410485362146203	0.705863751236677
Merged-chr9-108002543-4	chr9	108002430	108002630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013785)	promoter-TSS (NM_013785)	-118.0	NM_013785	27399.0	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	8.06205082457145	8.21912191378603	7.95463099991567	7.83928223767923	8.24590560236268	8.31062655897428	7.93055210982378	7.99118056365937	0.140310753479703	0.437907401445321	0.726095111057503
Merged-chr3-142700973-4	chr3	142700886	142701086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293560)	promoter-TSS (NM_001293560)	-62.0	NM_173763	229905.0	Mm.289643	NM_173763	ENSMUSG00000040213	Kyat3	Ccbl2|KATIII|Kat3	kynurenine aminotransferase 3	protein-coding	8.00054496173238	7.86192232929346	7.987986253802	8.57217592250493	8.10658319297144	7.79511140691225	8.53805055303499	8.12118041186944	0.0286509649043752	0.900864485862114	0.963265130981544
Merged-chr5-123907157-4	chr5	123907110	123907310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026603)	promoter-TSS (NM_026603)	-65.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	7.50166209098811	7.97903145992464	7.37264657827772	6.81908322676794	8.00842131467848	8.11790627196335	7.67510488030031	7.77033845789198	0.558381333747537	0.0296915115850979	0.16610957345875
Merged-chr1-191180617-4	chr1	191180536	191180736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007498, intron 1 of 3)	intron (NM_007498, intron 1 of 3)	2697.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	5.7500220949828	5.59302886504291	5.77545815294735	5.93059828221889	5.76405580901772	5.74205742688704	5.90394306522308	5.77136965781159	0.0256208385152803	0.920143132062106	0.970409558278764
Merged-chr11-3535486-4	chr11	3535383	3535583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159284, intron 3 of 21)	intron (NM_001159284, intron 3 of 21)	3809.0	NM_013870	29856.0	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	7.09270902221948	6.96942986183999	6.76181689446765	7.25841874829439	6.92177264307877	6.72609114694328	7.34747075009794	7.15705382440166	0.0207637291067331	0.926947977347154	0.97320240249562
Merged-chr16-38742300-4	chr16	38742213	38742413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285793)	promoter-TSS (NM_001285793)	54.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	5.98557148283115	6.00515149500073	6.06915696068028	6.30088875172923	5.70289035525	5.73845911873054	5.82192748001634	5.64205254874593	-0.617410430854559	0.013633862893409	0.0981834001305097
Merged-chr7-75700941-4	chr7	75700846	75701046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 16 of 36)	intron (NM_029332, intron 16 of 36)	-147392.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	4.71407787404727	4.84351803602422	4.83362528943351	5.2618121093198	4.64494917593311	5.08029806781158	4.91852855702797	5.07071630028879	-0.0428096025454923	0.904448065684995	0.964559678221358
Merged-chr2-32631889-4	chr2	32631788	32631988	+	914.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198791, intron 5 of 6)	intron (NM_001198791, intron 5 of 6)	2388.0	NM_021515	11636.0	Mm.29189	NM_021515	ENSMUSG00000026817	Ak1	Ak-1|B430205N08Rik	adenylate kinase 1	protein-coding	4.8962041086876	5.17930808868199	4.22500515307483	4.16832780236041	4.41881196695234	4.512701220364	4.96635652756667	4.79154657775371	0.000826691353731851	0.998533967278346	0.999362830169424
Merged-chr1-87755930-4	chr1	87755837	87756037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205391)	promoter-TSS (NM_001205391)	-74.0	NM_029846	77040.0	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	7.64360224184701	7.67485132019781	7.33715013519987	7.37066623640576	7.57306156508045	7.85451265757771	7.29007058350028	7.37362147708032	0.0377553875177381	0.853369343621742	0.944782811386362
Merged-chr12-26068475-4	chr12	26068405	26068605	+	970.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142000.0	NR_131149	629481.0	Mm.390460	NR_131149	ENSMUSG00000113550	Gm29687	-	predicted gene, 29687	ncRNA	4.77426997050437	4.45403487158115	5.43454960472244	5.281241556913	4.78851720285024	4.49612924094639	4.99969875224935	4.84816846814658	-0.500951910013348	0.211058762745908	0.515716175112166
Merged-chr15-31336828-4	chr15	31336717	31336917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	30942.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	8.02443565940061	7.93704021505852	8.0968695357346	8.22109625158901	7.89365693378408	8.00941861254054	8.04573750039787	7.93081189974659	-0.14347122986304	0.378895198485611	0.681389119075475
Merged-chr13-116712448-4	chr13	116712360	116712560	+	849.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125718.0	NR_153406	74680.0	Mm.488118	NR_153406	ENSMUSG00000114290	4930435F18Rik	-	RIKEN cDNA 4930435F18 gene	ncRNA	3.89732034109872	4.25054401725529	4.00664087220538	4.25233091029321	4.24456920184403	4.2316994702613	4.1819209490229	4.40442606050487	0.355441788834234	0.385823626348038	0.687267947141495
Merged-chr12-113146849-3	chr12	113146694	113146894	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5218.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	5.54040729970478	5.41213576759072	4.82051919557195	4.82941296393388	4.35901373188085	4.19798707124721	4.27741473912008	4.06248843976314	-2.07955519033501	9.53547449563035e-07	3.36062401506619e-05
Merged-chr15-102671161-4	chr15	102671060	102671260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026468)	promoter-TSS (NM_026468)	-113.0	NM_026468	67942.0	Mm.10314	NM_026468	ENSMUSG00000062683	Atp5g2	1810041M08Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	protein-coding	8.30121002679595	8.5730867215642	8.09292454040752	8.31376571753274	8.21139850413635	8.23755692283503	8.09919601868727	7.99979890368839	-0.244889109817276	0.156530662836072	0.442464399746187
Merged-chr1-55089022-1	chr1	55088922	55089122	+	680.0	f1_balb.idr	promoter-TSS (NM_001356512)	promoter-TSS (NM_001356512)	-779.0	NM_001356512	15510.0	Mm.1777	NM_010477	ENSMUSG00000025980	Hspd1	60kDa|CPN60|HSP-60|HSP-65|Hsp60	heat shock protein 1 (chaperonin)	protein-coding	2.73384653577454	2.83696731481841	2.93428516387088	2.84008375491529	2.80679775582483	3.22019859547937	2.98333947340369	3.05089005722827	0.772121163124465	0.201386135020012	0.503741344693191
Merged-chr19-38025528-4	chr19	38025426	38025626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 1 of 53)	intron (NM_001302140, intron 1 of 53)	18051.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	7.60565776810316	7.19505462792455	7.54901971867801	7.3693837130653	7.18842641763446	6.82463528929983	7.12921260553155	7.07685166598624	-0.495190984897399	0.0131520791306079	0.0957435846393692
Merged-chr4-34526914-4	chr4	34526805	34527005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23710.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	6.72363554509437	6.12947092006709	5.96360513180522	6.80322164220834	6.70455119327804	6.34748154183948	6.00515822758672	6.5608623369366	-0.0438591090870578	0.882079615830795	0.955564392066166
Merged-chr5-97062305-4	chr5	97062197	97062397	+	984.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 11 of 15)	intron (NM_080708, intron 11 of 15)	49299.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	5.42334716636396	5.06469210359046	5.18056637932945	5.38951146858527	5.60128113881444	5.06178151097266	5.75328991922828	5.17703018330228	0.286225759037407	0.372293277718501	0.676110200916599
Merged-chr5-114928438-4	chr5	114928309	114928509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359945, intron 2 of 5)	intron (NM_001359945, intron 2 of 5)	5169.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	5.80549330413478	6.70089447230684	5.97810952325393	5.38915662081098	6.60307327285899	6.26478007213412	6.23211467450687	5.97381684560642	0.354822330318641	0.296430765879742	0.608478404731474
Merged-chr3-89422806-4	chr3	89422773	89422973	+	783.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011368, intron 2 of 12)	intron (NM_011368, intron 2 of 12)	1252.0	NM_001113331	20416.0	Mm.86595	NM_011368	ENSMUSG00000042626	Shc1	Shc|ShcA|p66|p66shc	src homology 2 domain-containing transforming protein C1	protein-coding	3.15718773290152	3.25030048251728	3.21725883678316	2.97306487644371	3.30436007538766	3.32947192671537	3.26148542891508	3.21557583877417	0.518278193318492	0.337903178004096	0.647707372291549
Merged-chr2-34577700-3	chr2	34577598	34577798	+	946.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290625, intron 8 of 11)	intron (NM_001290625, intron 8 of 11)	170847.0	NM_001290626	227743.0	Mm.270866	NM_177345	ENSMUSG00000038696	Mapkap1	AI591529|D230039K05Rik|Sin1	mitogen-activated protein kinase associated protein 1	protein-coding	3.61171779543693	3.46757825275384	3.79796939159238	3.42183084591938	3.00776027269988	3.17468917611441	3.43907772522097	3.70616823441216	-0.75465903631575	0.193583159670116	0.493731393226286
Merged-chr17-17581473-4	chr17	17581366	17581566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	43023.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	6.96067596216708	7.24349463908411	7.16212185217104	7.3840331216626	6.72156214836418	6.4880533879776	6.92663541181899	6.73405635350858	-0.665379569069579	0.00154101790375652	0.019089473263398
Merged-chr4-63562036-4	chr4	63561954	63562154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144905, intron 2 of 9)	intron (NM_144905, intron 2 of 9)	1827.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	6.44248547333592	6.34235805780985	6.2059335284774	6.61247177755546	6.29991412538572	6.21190601048152	6.59515379879224	5.93396954428247	-0.204121548260524	0.413762427690997	0.708728091459933
Merged-chr14-73059879-4	chr14	73059807	73060007	+	831.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10793.0	NM_001162412	70086.0	Mm.158324	NM_133720	ENSMUSG00000033470	Cysltr2	2300001H05Rik|CYSLT2R|Cltr2|Cyslt2	cysteinyl leukotriene receptor 2	protein-coding	4.22844543205623	3.89840131113191	3.71728855758554	3.95879522579035	4.05978315744493	3.77700928272964	3.86246077800341	3.77119342196015	-0.224929667247142	0.622335543332746	0.83831156940409
Merged-chr8-104248532-4	chr8	104248425	104248625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021028)	promoter-TSS (NM_021028)	33.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	7.41174884825673	7.66228492373886	7.44197813198134	7.37592617418087	7.52252818298614	7.15146608392961	7.56555527338803	7.19566278662275	-0.12910497525676	0.509338239187369	0.773960180154769
Merged-chr6-83779231-2	chr6	83779131	83779331	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3419.0	NM_009357	21766.0	Mm.28371	NM_009357	ENSMUSG00000014748	Tex261	3110001O07Rik|AA409339|AI480706|AL033351|TEG-261	testis expressed gene 261	protein-coding	2.69397749496348	2.68555488218561	2.76483224470972	2.77719118881084	2.84226178063728	3.23710935264089	3.00267227767628	3.0132014436548	1.27918979714977	0.0380418009161201	0.195267710925832
Merged-chr11-84351456-4	chr11	84351366	84351566	+	967.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133360, intron 43 of 53)	intron (NM_133360, intron 43 of 53)	156028.0	NM_133360	107476.0	Mm.31374	NM_133360	ENSMUSG00000020532	Acaca	A530025K05Rik|Acac|Acc1|Gm738	acetyl-Coenzyme A carboxylase alpha	protein-coding	4.48400182619027	4.76185169484982	4.56592964560255	4.684930608288	4.37708456030377	4.5278774786291	4.02423340611622	4.6391789094816	-0.506400154554429	0.191634661446559	0.490978459689893
Merged-chr13-36088399-1	chr13	36088299	36088499	+	627.0	f0_balb.idr	intron (NM_201358, intron 2 of 2)	intron (NM_201358, intron 2 of 2)	28958.0	NM_201358	380840.0	Mm.390576	NM_201358	ENSMUSG00000046573	Lyrm4	BC034664|Gm903	LYR motif containing 4	protein-coding	3.13233007866168	3.07540754597981	3.18903007542632	3.30391027219802	3.0104239400073	2.98532491299677	3.00229129564426	3.13110931800427	-0.619137972601667	0.27894239574575	0.591146597992877
Merged-chr19-40660488-3	chr19	40660351	40660551	+	978.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	681.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	4.14611027070408	4.32806432389472	4.51987349672475	4.57012261406117	4.75226131930934	4.42780669777514	4.49906632255531	4.73901051106095	0.454902872485699	0.232061547676746	0.541638955728781
Merged-chr7-55962454-4	chr7	55962386	55962586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023647)	promoter-TSS (NM_023647)	7.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	7.04746472845546	7.01143097875831	6.64875337420742	7.06538103845739	7.6369746843518	7.85215878109387	7.43834238144359	7.37644981197636	0.845231121584354	4.28468111963419e-05	0.000988587738782633
Merged-chr8-70607576-5	chr8	70607473	70607673	+	930.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133772, intron 1 of 16)	intron (NM_133772, intron 1 of 16)	741.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	3.35429075523012	3.38295337717859	3.46474255196327	3.32491015536507	3.56123492846848	3.34543608727198	3.22435728633371	3.51421431548051	0.160375133991213	0.755602721150582	0.903840787980461
Merged-chr2-117444925-4	chr2	117444833	117445033	+	916.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102056.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	4.26064538777059	4.38550021628854	3.94793288400287	4.4337561641228	4.69013178226297	4.23930679127935	4.45406068234527	4.43207614863835	0.44192967648041	0.276676002739721	0.588657037782413
Merged-chr6-129232376-1	chr6	129232276	129232476	+	1000.0	f1_c57bl6.idr	TTS (NR_040265)	TTS (NR_040265)	5669.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	3.18377082682929	3.46225256275447	3.184184427659	2.89736949315059	3.24526064492365	3.03522297045244	3.11317249910149	3.23965667247112	-0.104868996963196	0.858634678046285	0.946576014812915
Merged-chr10-112000628-4	chr10	112000524	112000724	+	839.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44B|DNA|TcMar-Tigger	-3360.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	4.00214313268129	4.37635837247511	4.46160931551165	3.27820222028635	4.31960388607144	4.07773689556923	3.77065345655669	3.89624942817268	-0.202007368255677	0.715644982613397	0.886331836593157
Merged-chr8-79415081-4	chr8	79414978	79415178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15610.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	7.34904123172169	6.65205815112607	7.46160679882991	7.87769342109525	6.99976790841373	6.5766722576709	6.93211707827102	7.01409063375095	-0.710275452905572	0.00978406189712289	0.0776826335297426
Merged-chr2-174085197-4	chr2	174085097	174085297	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102424, intron 2 of 8)	intron (NM_001102424, intron 2 of 8)	8146.0	NM_001102423	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	4.47796269146527	3.89539197784172	4.47871088083995	4.18428711253186	4.32409731517357	3.89264890242854	4.26349200148266	3.88813533508839	-0.394990582651335	0.383670949327783	0.685509174712643
Merged-chr5-99269253-3	chr5	99269158	99269358	+	832.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16331.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.94883370182	3.9402321857845	3.75445076171675	3.7578773108378	3.8300517416857	3.76217212356864	3.57327192062073	3.853397713837	-0.253589791684207	0.578272040338988	0.814598063672125
Merged-chr8-10911219-4	chr8	10911085	10911285	+	924.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11263.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	5.04148445908856	5.1317612196403	4.87880575917038	5.05028876136333	4.63084582395739	4.50383323359115	4.85521540177805	4.31708332392073	-0.90702986710578	0.00992667357523273	0.0785165794434371
Merged-chr6-127453672-4	chr6	127453577	127453777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346512)	promoter-TSS (NM_001346512)	50.0	NM_001346512	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	6.26611954679323	6.66755180214755	6.77938171835831	6.26043781834076	6.39412779994619	6.5922720423775	6.41776467500432	6.22263821670352	-0.137571735600744	0.571088888693005	0.810348982482694
Merged-chr13-12468657-4	chr13	12468551	12468751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6913.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	6.93211393181262	6.52996936548495	7.13727508442741	7.12032479649858	7.23999408671281	6.64461667218546	6.94907339558263	6.99189782207241	0.0367697439272032	0.876307898905708	0.95350060274953
Merged-chr2-72384373-4	chr2	72384280	72384480	+	918.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 9 of 19)	intron (NM_023057, intron 9 of 19)	-91839.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	4.46555947616433	4.07584970463268	3.97690692938185	4.44515497058266	4.70471508372639	4.4203222353254	4.44561836613779	4.72040485138931	0.716340859584549	0.0759362779180816	0.297746467069617
Merged-chr18-75917925-3	chr18	75917829	75918029	+	685.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	97751.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	2.88761277138114	2.95681542500696	3.04699310174814	2.87255820863821	3.65365438585048	3.6197147877877	4.20425300092365	3.59949094183173	3.07955225736267	2.2461032159492e-07	8.94657978780349e-06
Merged-chr3-96557880-4	chr3	96557799	96557999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023719)	promoter-TSS (NM_023719)	-58.0	NM_023719	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	8.17341727299617	8.50638646187589	8.09272330298516	7.96859212882174	8.23421866086919	8.38857080728735	8.2523532897213	8.2054547645254	0.0931957737894716	0.603632365079422	0.828227309096289
Merged-chr16-30776462-4	chr16	30776358	30776558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	176735.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	5.74381015484901	5.39828475648843	6.51933660113915	6.29123248833938	5.68518077643424	5.01889761970096	6.19417353800027	5.76592230984138	-0.528936641596914	0.35321494580324	0.660106772056838
Merged-chr5-81076577-4	chr5	81076491	81076691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 2 of 27)	intron (NM_198702, intron 2 of 27)	54998.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	4.96578551900015	4.74027779890096	4.93381340770578	5.41492901017621	4.73735018806375	4.13409964537471	4.87617472262829	4.404132500519	-0.978435869255907	0.0169377232696235	0.114308353523138
Merged-chr2-153147414-4	chr2	153147303	153147503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 11 of 12)	intron (NM_001172117, intron 11 of 12)	-13898.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	5.85323532980116	5.74816918438197	5.82983710887111	5.91768440652334	5.7380177417227	6.28984576160429	6.1227608527782	6.31059476185278	0.440346752854482	0.0913975464871574	0.330417286881476
Merged-chr1-93804246-3	chr1	93804126	93804326	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025454, intron 1 of 7)	CpG	261.0	NM_025454	66262.0	Mm.64065	NM_025454	ENSMUSG00000026283	Ing5	1700001C14Rik|1700027H23Rik|1810018M11Rik|AI225768	inhibitor of growth family, member 5	protein-coding	6.90158942736927	7.59028731574476	6.87365782828016	7.02703038923893	7.57185362367817	7.56433408753042	7.71252993757986	7.30114212208774	0.551055405225329	0.0156587785613907	0.108074876294117
Merged-chr3-132755961-3	chr3	132755877	132756077	+	759.666626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163455, intron 22 of 25)	intron (NM_001163455, intron 22 of 25)	71833.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	3.45555845761738	3.43492126947263	3.85178276619878	3.56462087864982	3.43612326372324	3.51132022686019	3.70120886170065	3.33308297021642	-0.27367798388306	0.592755130010223	0.822397929572839
Merged-chr2-165917755-3	chr2	165917675	165917875	+	989.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32937.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	3.84496021507552	3.86736263328187	3.61974686088089	3.27015705982358	4.34393446380189	3.85955303706704	3.87954204228322	4.20264198247691	1.22166881372249	0.0135387052792044	0.0977156259448883
Merged-chr7-67371582-4	chr7	67371476	67371676	+	898.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 1 of 11)	intron (NM_001357324, intron 1 of 11)	1282.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	3.95456785187573	4.23195401737469	3.39004760480582	3.52142482729119	3.95486013690908	3.82262600279454	3.63149166266459	3.95270357443153	0.0898931713786052	0.864628444702414	0.949201660556057
Merged-chr17-23700267-4	chr17	23700155	23700355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16229.0	NM_020293	56863.0	Mm.491368	NM_020293	ENSMUSG00000066720	Cldn9	nmf329	claudin 9	protein-coding	6.45540555480433	6.38608137492592	6.24759289580508	6.25848344517355	6.05515282653185	6.00337227411031	6.35795286655028	6.06007111446885	-0.318589646638166	0.169082346997861	0.46161486940974
Merged-chr2-171329095-4	chr2	171328994	171329194	+	977.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	597287.0	NM_001163686	76829.0	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding	4.99058657413511	5.06751778021303	4.99141348559325	5.80498157799051	5.05339008847282	5.33651148586378	5.10506362759625	4.912742917835	-0.337073316343758	0.359218105137183	0.665195522804505
Merged-chr7-45922422-4	chr7	45922302	45922502	+	838.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010129)	promoter-TSS (NM_010129)	-976.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	3.81355477618486	3.83665689161896	3.81409933902364	3.65861447445875	3.67478202964115	3.8271728799435	3.84747153955526	4.04161324843206	0.219428916922898	0.626551962444368	0.840610020168593
Merged-chr19-53566050-3	chr19	53565957	53566157	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AmnSINE1|SINE|Deu	-34339.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	6.04318799724296	5.12660174378037	5.99572948771981	5.61365462607793	4.21679243328197	4.75089559911339	4.20467282947906	4.08949505211623	-2.87800316378394	1.38994867024818e-11	1.22596228500118e-09
Merged-chr19-15924594-3	chr19	15924497	15924697	+	971.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205339)	promoter-TSS (NM_001205339)	25.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	3.78038508760831	3.95219609017632	3.92538760908692	4.19387676999798	3.37768139469299	3.67645665670612	3.60461712377907	3.61630389899838	-1.29284684739849	0.00811290734772703	0.0678576535962235
Merged-chr19-45308150-4	chr19	45308028	45308228	+	982.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55606.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	4.61925121448685	4.76457143760385	4.74259215095859	5.10720057603213	4.64191237233484	4.91638952762029	4.83131831812604	4.95396952584524	-0.0197027494737279	0.955390848439485	0.984123580734412
Merged-chr14-47359793-4	chr14	47359677	47359877	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-14083.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	5.76743835463332	5.03713699231095	5.43321108073276	5.59123009230549	5.51763882284651	5.51854928657754	5.69317859992239	5.76433644990312	0.236194667316198	0.428258003283092	0.719325810566156
Merged-chr13-98815324-4	chr13	98815231	98815431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172591, exon 1 of 26)	5' UTR (NM_172591, exon 1 of 26)	118.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	8.22664619018618	8.15145143044966	8.21039381973567	8.17465679936285	8.22571354390459	8.23752792526288	8.28422111923413	8.08102662767701	0.0256250036172944	0.86568076943824	0.949726204279319
Merged-chr16-57354598-4	chr16	57354500	57354700	+	880.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	1323.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	3.68541098277382	4.35232800610717	4.15601196437833	3.86776116538092	4.14237085840203	4.18965385427638	4.0475322118151	3.91350006963308	0.109972292777487	0.80810728420965	0.925959677004648
Merged-chr5-136116642-4	chr5	136116553	136116753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011293)	promoter-TSS (NM_011293)	-38.0	NM_011293	20022.0	Mm.4896	NM_011293	ENSMUSG00000039771	Polr2j	14.5kDa|Polr2i|Rpb11a|Rpo2-4	polymerase (RNA) II (DNA directed) polypeptide J	protein-coding	6.96217455672712	7.46151933589225	6.83809097352355	6.97598079704467	7.25873501793015	7.53444499605618	7.05367813873397	7.02301155695428	0.203445942403588	0.373812328038078	0.677216414469042
Merged-chr3-97204072-4	chr3	97203972	97204172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029933, exon 10 of 10)	3' UTR (NM_029933, exon 10 of 10)	23292.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	6.15525139655354	5.91655686862898	5.90846598526296	6.08331866010574	5.87428129689938	5.96497065624023	5.75954439747917	5.80955239581972	-0.271165835304522	0.264690331067678	0.576566406596513
Merged-chr7-30562813-3	chr7	30562681	30562881	+	976.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170760)	promoter-TSS (NM_170760)	403.0	NM_025498	66340.0	Mm.86557	NM_025498	ENSMUSG00000036835	Psenen	1700023M09Rik|Pen-2	presenilin enhancer gamma secretase subunit	protein-coding	4.30534909563031	3.95880531056074	4.2154990052641	4.23809898487436	4.11055696824884	4.43433868303208	4.48610132671032	4.50462102700435	0.479166992049518	0.232415963706879	0.542006941900659
Merged-chr2-104494277-2	chr2	104494177	104494377	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001145824, exon 1 of 16)	5' UTR (NM_001145824, exon 1 of 16)	212.0	NM_010434	15259.0	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	5.40508501046347	5.67680261790774	5.73716741866971	5.76881406340484	5.6483084987607	5.91103294743708	5.49858625897478	5.84890902693481	0.111287880285671	0.681522441867701	0.869434284249504
Merged-chr15-86189272-4	chr15	86189168	86189368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3127.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	5.66255453251896	5.32555589528484	5.53258028627301	6.1687392976551	5.36294409460291	5.33055615183601	5.63478648290953	5.55596335763555	-0.439474457602779	0.168911351595807	0.46142696865359
Merged-chr8-10794794-4	chr8	10794688	10794888	+	870.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87666.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	4.404480778314	4.21074607818597	3.96240574879636	4.65772483991294	4.0436367271634	3.57583026737238	3.83752918453342	4.24336046560275	-1.00837574564042	0.0394179069468267	0.199923556973648
Merged-chr18-89162554-4	chr18	89162440	89162640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34887.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	6.03211033777039	5.94560629214264	6.38743178621762	6.50161411883122	6.38524629013288	5.82032207944677	6.55885453328035	6.4974292797044	0.151407099695672	0.583101662543886	0.816904287158464
Merged-chr13-118538916-3	chr13	118538823	118539023	+	665.766663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17245.0	NR_045982	75890.0	Mm.141235	NR_045982	ENSMUSG00000100727	1700003P14Rik	1700030O10Rik|4930584L06Rik	RIKEN cDNA 1700003P14 gene	ncRNA	3.08780723541403	2.99715788050171	2.93041972329574	2.9174191596233	3.82449834361726	4.03707810843076	3.88952116886767	3.58519997272581	3.06376259781782	7.48932523540276e-08	3.28860383054123e-06
Merged-chr3-69691225-4	chr3	69691122	69691322	+	927.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-30833.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	4.33515127510903	4.53598871080546	4.33580606715239	4.0093364362663	4.91562578654713	4.88550886911708	4.72654167864381	4.78131485128525	1.18146554357717	0.00130812263531934	0.0167255004597441
Merged-chr3-21941732-3	chr3	21941613	21941813	+	826.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-134939.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.42880891019924	3.74323023436053	4.079895133287	4.1032838928058	3.67144792857304	4.2472091402921	3.77886697323642	3.84425836528257	0.0721723045256729	0.88852617217892	0.958180162421076
Merged-chr11-75158691-3	chr11	75158591	75158791	+	690.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 16 of 18)	(CA)n|Simple_repeat|Simple_repeat	9461.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	3.2603535343562	3.08814407167707	3.26083332608928	3.17409529879314	3.00998065626975	2.87489539754909	3.0273203602163	2.7682028991546	-1.13260773925717	0.0629693030044102	0.266078481362476
Merged-chr13-67463968-4	chr13	67463863	67464063	+	961.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-12339.0	NM_177712	238692.0	Mm.486478	NM_177712	ENSMUSG00000069206	Zfp874a	C330011K17Rik|Rslcan15|Zfp874	zinc finger protein 874a	protein-coding	5.05199447172868	4.69534616160976	4.48006297225848	5.06407211161321	5.22574265378054	4.85100146133796	5.51130076634445	5.14484021469208	0.666294362830417	0.0637242128551935	0.268122347154922
Merged-chr1-86509600-4	chr1	86509527	86509727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16930.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	6.96459143043581	7.07306972096293	6.64560991075374	6.80463440035716	6.78646841025225	6.68969379876552	6.68828947180418	6.73253808256349	-0.21583338953241	0.294330630783838	0.606614080475317
Merged-chr2-125731941-4	chr2	125731858	125732058	+	975.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7810.0	NM_199022	271849.0	Mm.425101	NM_199022	ENSMUSG00000035109	Shc4	6230417E10Rik|9930029B02Rik|Gm685|RaLP	SHC (Src homology 2 domain containing) family, member 4	protein-coding	5.52736357390739	5.42511480390745	5.84237891502192	5.35190765040912	5.10610462595865	5.0989085159107	5.33806889482243	4.91416816209538	-0.752377521117487	0.0153692591965174	0.106707813143671
Merged-chr5-38309110-4	chr5	38309017	38309217	+	741.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10392.0	NM_013503	13492.0	Mm.167154	NM_013503	ENSMUSG00000039358	Drd5	D5R|Drd-5|Drd1b|Gpcr1	dopamine receptor D5	protein-coding	3.5347270866403	3.87713685430449	3.71100384625796	3.8201682085913	3.9585616291909	3.65148270200555	3.98619366435492	4.0016811192292	0.458565232603855	0.319325425508216	0.631175598074179
Merged-chr9-32694415-4	chr9	32694310	32694510	+	939.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1632.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	4.92194752922688	5.69417203482739	5.33240062096073	5.49572274707328	5.01074125017803	4.5154051901818	4.7835960675871	4.43216452634928	-1.31151162963614	0.000518229122131762	0.00794482019799228
Merged-chr7-35423296-3	chr7	35423199	35423399	+	830.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153799, intron 11 of 19)	intron (NR_153799, intron 11 of 19)	-25793.0	NM_001199015	30962.0	Mm.45874	NM_021291	ENSMUSG00000030492	Slc7a9	CSNU3	solute carrier family 7 (cationic amino acid transporter, y+ system), member 9	protein-coding	3.18217212406846	2.94654263733461	3.10545482307823	3.20461084552096	4.07959999780495	3.51545269523115	3.81516553320229	4.50503827477937	2.90535596983866	4.03969660732676e-06	0.000122881010603808
Merged-chr2-34600033-3	chr2	34599929	34600129	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290625, intron 10 of 11)	intron (NM_001290625, intron 10 of 11)	155203.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	3.76125678006109	3.91195171241104	4.08667801350427	3.8823979475332	3.54906057984344	3.71020578347493	3.84701530680679	3.75966582097228	-0.588270798995099	0.201156833298957	0.503396204149708
Merged-chr12-80835076-4	chr12	80835051	80835251	+	980.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178682, intron 2 of 5)	Lx5|LINE|L1	44619.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	4.7023375813321	5.02328518631396	4.49734841576579	4.51067083102885	4.74553526403394	4.62912898980911	4.56269181621999	4.77375112533485	-0.0259434599666958	0.943087340566241	0.97939909270739
Merged-chr15-74929068-3	chr15	74928963	74929163	+	798.755554	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25988.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	3.71277200312456	3.71768922535187	3.76837579842221	3.32452363117359	4.0344162776338	4.26777084272394	3.90367057005039	3.86975188596035	1.16307863274639	0.0134377537206703	0.0972631555911723
Merged-chr7-100487514-3	chr7	100487416	100487616	+	957.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5842.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	4.13524358922386	4.04089536147309	4.17879910012259	4.30649940594014	3.87981825650749	3.50897488790363	4.11732076533116	3.94577679133261	-0.787869282213543	0.0857907511785739	0.319027212692112
Merged-chr13-94358973-4	chr13	94358862	94359062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009680)	promoter-TSS (NM_009680)	2.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	6.57727725565032	6.79733493758818	6.61026781205475	6.77197822365431	6.82648070692192	6.38533302607423	6.68151881649603	6.43781984075804	-0.132211003500945	0.548161272102507	0.797241506537612
Merged-chr14-31001085-1	chr14	31000985	31001185	+	563.0	f0_balb.idr	promoter-TSS (NM_029626)	promoter-TSS (NM_029626)	-308.0	NM_001165930	76485.0	Mm.8766	NM_029626	ENSMUSG00000021916	Glt8d1	2410004H05Rik|5430414N14Rik|AI450005	glycosyltransferase 8 domain containing 1	protein-coding	3.16482480064365	3.27262458967424	3.16519192509881	3.18580756796239	3.4526338519364	3.71696347085127	3.27557856454104	3.22637335768281	0.828767949722769	0.121847208926813	0.386754179897507
Merged-chr11-116811837-4	chr11	116811719	116811919	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347633, intron 3 of 4)	intron (NM_001347633, intron 3 of 4)	16227.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	4.71756040518536	4.86019905046795	4.33308982016989	4.85660396502058	4.61358926359285	4.92534280447935	4.54021115156727	4.27989609775256	-0.236904418798709	0.540369812294117	0.792761667540263
Merged-chr2-163662875-4	chr2	163662766	163662966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 2 of 4)	B3|SINE|B2	4408.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	6.09337345572066	5.91245663103696	5.88108561622761	5.88860478110025	6.04122051487075	5.93543485658804	5.85120076028541	5.78039591919188	-0.0454173499457897	0.852330304559209	0.944430754968762
Merged-chr5-93032850-3	chr5	93032762	93032962	+	820.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	12160.0	NM_175270	78088.0	Mm.245085	NM_175270	ENSMUSG00000045314	Sowahb	5730467H21Rik|Ankrd56	sosondowah ankyrin repeat domain family member B	protein-coding	5.0756478631226	4.97173557328701	5.65277393162127	5.39934664760086	4.3849512948869	4.32410581551067	4.0511815886747	4.50497263507924	-2.07470607856204	1.67332008912687e-07	6.85695167668173e-06
Merged-chr8-6138811-3	chr8	6138715	6138915	+	861.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1033528.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	2.62737622535259	2.57240838184941	2.70842651091886	2.79662699156694	3.21755605757092	3.59300112456121	3.26621984448188	3.2265083609033	2.75990882251871	0.00018025215836491	0.00333682570035335
Merged-chr6-97299526-3	chr6	97299417	97299617	+	947.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 20 of 23)	ORR1F|LTR|ERVL-MaLR	-46737.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	3.2335628714737	3.34551417965208	3.38747424162305	3.68334421088969	4.44059593356689	4.64943346719193	4.13436314721018	3.76781605026707	2.37719749311014	5.98198963509773e-05	0.00131701837376004
Merged-chr4-131843514-4	chr4	131843427	131843627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025297)	promoter-TSS (NM_025297)	56.0	NM_025297	26922.0	Mm.192706	NM_025297	ENSMUSG00000028910	Mecr	AI195831|NRBF-1|Nrbf1	mitochondrial trans-2-enoyl-CoA reductase	protein-coding	5.1409426554484	5.611618019098	5.58473161480814	5.36530324621425	5.4728239706655	5.62683267476023	5.18508305791874	5.17309998182757	-0.0997887839373892	0.742005537992469	0.898417179766546
Merged-chr6-115887025-4	chr6	115886866	115887066	+	636.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_031177, exon 9 of 29)	exon (NM_031177, exon 9 of 29)	33438.0	NM_031177	81896.0	Mm.333335	NM_031177	ENSMUSG00000030323	Ift122	C86139|Wdr10|sopb	intraflagellar transport 122	protein-coding	2.49414837440856	2.49164769984061	2.81496162718371	2.39478530416245	2.72154594964227	2.73878458755792	2.6860335851059	2.69460080128279	0.818897984148294	0.222218558470556	0.530247897196637
Merged-chr6-114842040-4	chr6	114841945	114842145	+	664.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	79776.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	3.65483098096279	3.73754746352395	3.38812142706523	2.9804716203622	3.54802364675206	3.31193339910849	3.18700688492664	3.74597416694655	-0.0181851063225225	0.975735153018156	0.991347073148764
Merged-chr13-12409355-4	chr13	12409260	12409460	+	865.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144835, intron 14 of 44)	intron (NM_144835, intron 14 of 44)	13985.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	3.56504786354592	3.58610899877241	3.87282165325089	3.71234406606226	3.96507929967174	3.94701616733512	3.49386218052504	3.37829925951375	0.117506576631638	0.818743293619347	0.930477529358738
Merged-chr1-37860541-4	chr1	37860443	37860643	+	953.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290720, intron 1 of 17)	ORR1B2|LTR|ERVL-MaLR	4539.0	NM_207228	211484.0	Mm.332756	NM_207228	ENSMUSG00000060771	Tsga10	4933432N21Rik|AI843383|Gm217|Mtsga10	testis specific 10	protein-coding	4.84453466024901	5.0542229502798	4.68908869330182	4.67654291361242	4.94121291043361	4.78135970991	4.85821081525115	5.13570233751247	0.240308158328087	0.472676506313463	0.750765866162416
Merged-chr3-30508595-4	chr3	30508515	30508715	+	806.625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361034, intron 1 of 16)	CpG	1060.0	NM_001361034	14013.0	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	3.94021085664744	4.07032493454434	4.29100157167272	3.80540179223431	3.76006598083778	4.01086270235444	3.82111340707875	4.3249944844323	-0.0982714843016775	0.832251019618223	0.935753947395642
Merged-chr12-81658243-4	chr12	81658145	81658345	+	835.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033149, intron 1 of 2)	intron (NM_001033149, intron 1 of 2)	26996.0	NM_001033149	69480.0	Mm.130002	NM_001033149	ENSMUSG00000042734	Ttc9	-	tetratricopeptide repeat domain 9	protein-coding	3.87448394455414	4.28258832581756	4.02411244684133	3.91620140991118	3.83286559065922	3.99642727411095	3.85941076020909	4.06767708745498	-0.254119165843011	0.562157522768591	0.80544717714015
Merged-chr6-70874597-4	chr6	70874483	70874683	+	845.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010121, intron 2 of 16)	intron (NM_010121, intron 2 of 16)	30068.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	4.09969946709857	4.16426334938218	3.95272821168661	4.21015874677373	4.15130385881352	4.12624945789663	3.98734832068341	4.09784425933003	-0.0657507548644464	0.872345645522766	0.952024737008678
Merged-chr10-20531893-3	chr10	20531771	20531971	+	845.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	16457.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	3.42789541174626	3.25932405208033	3.53917802423217	3.64180645200506	3.3797975104582	3.54298215014162	3.76287011355542	3.42655425708674	0.162852520093344	0.753786023932516	0.9028447998413
Merged-chr14-99099800-4	chr14	99099692	99099892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028315)	promoter-TSS (NM_028315)	-22.0	NR_153390	72662.0	Mm.163339	NM_028315	ENSMUSG00000033166	Dis3	2810028N01Rik	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding	8.74418046551924	8.51438312922978	7.97935677504042	8.52563311585472	8.55250870847963	8.45995228303178	8.82466534480687	8.39911797446132	0.12365307058956	0.538772010851484	0.791751031472413
Merged-chr7-49246073-4	chr7	49245999	49246199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175272)	promoter-TSS (NM_175272)	-90.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	8.20191607569368	7.83158611548736	8.06186099165211	8.29229023587368	7.96266119218567	7.95575625435425	8.23218400178227	7.96189258390607	-0.103621155967211	0.565970966831472	0.807783748011785
Merged-chr3-88526410-4	chr3	88526306	88526506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5989.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	5.73332739791255	5.69706615397005	5.22089123416962	5.64286863765447	5.81591720094242	5.75291951276015	6.4472413442673	5.59934150626101	0.577984207711725	0.0622434688953892	0.264030266537837
Merged-chr12-84451155-4	chr12	84451093	84451293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173756)	promoter-TSS (NM_173756)	-169.0	NM_134042	104776.0	Mm.247510	NM_134042	ENSMUSG00000021238	Aldh6a1	1110038I05Rik|Mmsdh	aldehyde dehydrogenase family 6, subfamily A1	protein-coding	8.75592880668511	9.03893688812731	9.07417346402454	8.78385233639099	8.94221597421239	9.0252939953845	8.85022672898213	8.89965106459097	0.0149297157933966	0.923036505062914	0.971488790221253
Merged-chr8-12677716-4	chr8	12677604	12677804	+	796.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5604.0	NM_198031	259279.0	Mm.142095	NM_198031	ENSMUSG00000000759	Tubgcp3	GCP3|Spc98p	tubulin, gamma complex associated protein 3	protein-coding	3.5025273193606	3.79279797809388	3.62000205587675	3.36663234928809	3.56317678903202	3.89921834406254	3.98565643853723	3.77581951228482	0.727408224557443	0.135834366750021	0.410243322164528
Merged-chr10-116582976-4	chr10	116582859	116583059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1448.0	NM_001359249	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	5.93159205264033	6.12822478964836	5.99929365851659	5.82917966473758	6.31085419168548	5.83174355494072	6.03160388037116	5.90540967325478	0.123672345106522	0.627950970095603	0.841380739306172
Merged-chr12-99903056-4	chr12	99902961	99903161	+	976.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028354, intron 6 of 15)	intron (NM_028354, intron 6 of 15)	18546.0	NM_028354	104884.0	Mm.312323	NM_028354	ENSMUSG00000021177	Tdp1	2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1	tyrosyl-DNA phosphodiesterase 1	protein-coding	5.06153389422196	5.02415160342186	4.85386007481483	4.98367012834489	4.87909812963683	4.87109443300015	5.26881417008713	4.73226910573256	-0.0608490370094355	0.853044241120153	0.944678751070911
Merged-chr4-32615335-4	chr4	32615228	32615428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122978)	promoter-TSS (NM_001122978)	-142.0	NM_001122978	26885.0	Mm.22279	NM_011997	ENSMUSG00000028282	Casp8ap2	D4Ertd659e|FLASH	caspase 8 associated protein 2	protein-coding	9.49694146167265	9.54505767686694	9.61024191440083	9.58188566141933	9.44250464818172	9.65327092897739	9.55325420942243	9.41668266824757	-0.0507831016570992	0.709274385577299	0.883431177332258
Merged-chr14-65332117-4	chr14	65332021	65332221	+	874.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26555.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	4.28126561839302	4.48654935133758	4.08760514057086	4.63505456674172	4.02063958349973	4.36335344921493	4.61158389546804	4.03195920568694	-0.300052000899704	0.490579710954143	0.762273204959831
Merged-chr7-75633137-3	chr7	75633041	75633241	+	849.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	Lx9|LINE|L1	177607.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	4.11552445608156	4.31659983834185	3.73301660319982	4.38190959379272	3.66491760525157	3.39027248764952	3.60340725714842	3.61478742843252	-1.75656375282751	0.000607218536395276	0.00902321674364913
Merged-chr7-113514440-2	chr7	113514340	113514540	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360668, intron 1 of 12)	intron (NM_001360668, intron 1 of 12)	606.0	NM_001360669	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	3.96554675776933	3.94295342602472	3.80758331073769	4.07449952994369	4.24115696977395	3.92612670046846	4.17566260292432	4.19188616032552	0.483058669077735	0.252795534391294	0.564035088324416
Merged-chr7-25221369-4	chr7	25221288	25221488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175436)	promoter-TSS (NM_175436)	-37.0	NM_175436	210172.0	Mm.129371	NM_175436	ENSMUSG00000046541	Zfp526	D030024H03Rik|Znf526	zinc finger protein 526	protein-coding	7.69161918740593	7.79307916763879	7.42976154965472	7.69371625597888	7.6287825429479	7.7679547571181	7.74962620356477	7.63759595638702	0.0418942814195499	0.809108423488915	0.926362488588753
Merged-chr16-92869847-4	chr16	92869755	92869955	+	869.9250490000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43781.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.76737900096848	4.34432371895423	4.48895354377654	4.78039090447292	4.96168323730894	4.62032411120709	4.74539053257365	4.61316381381618	0.28383718956603	0.438417869224061	0.726385226396654
Merged-chr12-112873771-4	chr12	112873684	112873884	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12868.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	4.87405450814308	4.9492876408088	5.24483915111366	4.62870510530231	4.73930706810678	4.72994641833136	4.95376341276137	4.75938139492892	-0.263229916051653	0.454026211679487	0.737867750151472
Merged-chr11-73326660-4	chr11	73326556	73326756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2019.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	8.23977098299719	8.24451334370256	8.50066441659151	8.23865796904735	8.16733744807339	8.06801485890355	8.02306562476003	8.16447465796591	-0.252923560692424	0.11319138961046	0.371906975057362
Merged-chr8-71542215-3	chr8	71542109	71542309	+	929.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028617)	promoter-TSS (NM_028617)	-721.0	NM_028617	73711.0	Mm.307770	NM_028617	ENSMUSG00000031813	Mvb12a	1110012M11Rik|Fam125a	multivesicular body subunit 12A	protein-coding	4.09319632023835	4.33639809912468	4.34135522547408	3.90434511614328	3.90730214744162	3.96523200575322	3.58978145048656	3.99685893518165	-0.810222962790644	0.0790236493809882	0.304168883419765
Merged-chr3-108574207-4	chr3	108574107	108574307	+	797.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025444, intron 2 of 3)	intron (NM_025444, intron 2 of 3)	2508.0	NM_025444	99730.0	Mm.24431	NM_025444	ENSMUSG00000048100	Taf13	1810004N01Rik|2010309N11Rik|AI847295|TAFII18	TATA-box binding protein associated factor 13	protein-coding	4.23130915861624	4.3263678710153	4.13332515554406	3.85440451799128	4.09631052018357	4.45407120081946	4.86091427870594	4.52497615349751	0.881926398847399	0.0395223017616433	0.200224762782349
Merged-chr11-106818552-4	chr11	106818430	106818630	+	897.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166685, intron 18 of 18)	intron (NM_001166685, intron 18 of 18)	29278.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	4.86112554912759	4.61233202286025	4.53279333658801	4.69315336385082	4.56863821920429	4.27442004801269	4.42670742675574	4.75832277741671	-0.344726401863538	0.348534347331693	0.656287566697246
Merged-chr5-21488784-3	chr5	21488686	21488886	+	762.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199632, intron 19 of 20)	HAL1|LINE|L1	-54741.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	3.62543460728177	3.8671031116429	3.84582832712443	4.15935659926793	3.64287004679323	3.74352222892385	3.97163873096216	4.03110785534455	-0.145485528078214	0.761458654184108	0.906546472680028
Merged-chr3-58691447-4	chr3	58691367	58691567	+	966.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009174, exon 1 of 2)	exon (NM_009174, exon 1 of 2)	921.0	NM_009174	20439.0	Mm.2847	NM_009174	ENSMUSG00000036432	Siah2	AA415433|Sinh2	siah E3 ubiquitin protein ligase 2	protein-coding	4.56919317332254	4.80179351509708	5.18171128722646	5.00815924779171	4.61070039686977	4.79411484122828	4.97310298033495	5.23379415127396	0.00659843182803819	0.985486120693935	0.99468068720618
Merged-chr5-113180384-3	chr5	113180213	113180413	+	910.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17000.0	NM_172884	243219.0	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	3.22949530063579	3.44822197742361	3.34641178499593	3.21368377209263	3.28324574393752	3.56869841394371	3.15695531219977	3.2282914432016	0.0255990364970837	0.962093572294093	0.986416651799321
Merged-chr19-4301951-3	chr19	4301850	4302050	+	866.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	4272.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	3.20635990476002	2.98671667457235	3.50675882567835	3.23777623650482	2.78861593785367	2.92403957026814	3.13714987849886	3.2050187773017	-0.904056415431098	0.144527231932138	0.423678002288688
Merged-chr7-84151764-2	chr7	84151664	84151864	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133722, exon 1 of 3)	exon (NM_133722, exon 1 of 3)	129.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	4.30792886133298	3.85994931876834	4.65602809217147	4.03441912861809	4.18569960236643	4.08100012332115	4.28889990545132	4.86855785235375	0.355472964389823	0.449147363324723	0.73430918582637
Merged-chr17-81580622-4	chr17	81580530	81580730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	157757.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	5.96464525801082	5.53332124920723	5.78202131870207	6.09747635588802	6.27670791714227	5.49184347619926	5.86980430678393	5.82636083480574	0.0648819005383971	0.827798238414221	0.933903677361406
Merged-chr3-102995690-4	chr3	102995552	102995752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025679)	promoter-TSS (NM_025679)	-88.0	NM_025679	66641.0	Mm.33937	NM_025679	ENSMUSG00000027854	Sike1	2810005O12Rik|5730470L24Rik|AI450236|AI839862|Sike|Sikeb	suppressor of IKBKE 1	protein-coding	7.06066084032405	7.01479468211955	6.99929944419269	7.40003367754355	6.92264318781545	7.27477457194765	7.25875971943456	7.08109420986668	-0.0118308557042213	0.954878826605096	0.983878635209741
Merged-chr19-24166641-3	chr19	24166536	24166736	+	973.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011597, intron 1 of 22)	intron (NM_011597, intron 1 of 22)	7553.0	NM_001198985	21873.0	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	3.56169447871345	3.66797177450464	3.41632316479277	3.34693342928281	4.38599052440814	4.2111524821649	4.53241309078331	4.79226367977637	2.73021273663495	2.19874779196606e-09	1.327435700461e-07
Merged-chr11-108223328-4	chr11	108223216	108223416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	120572.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	6.31781568751814	6.22495300400936	6.26338808357419	6.05783381901535	6.22981744285016	6.16757915914069	6.53124654249523	6.38479261049149	0.191494451584671	0.405658992559661	0.702403459944636
Merged-chr16-94571111-9	chr16	94571086	94571286	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	279.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	4.98395257128358	5.16215871060965	5.05590793996791	4.89996085527574	5.43955494545635	5.39057762166026	5.1303789528987	5.08658630375167	0.482370286008451	0.114271622701894	0.373859772452381
Merged-chr13-37658204-4	chr13	37658108	37658308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A4|LTR|ERVK	-167830.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.04815691152073	6.15858024083807	5.84860618009286	5.69759998207518	5.90501869333366	6.16061028949926	5.93353854396883	5.93749414199214	0.072524368651365	0.777269202033814	0.913097260751081
Merged-chr16-25064704-2	chr16	25064604	25064804	+	730.375	f1_balb.idr|f1_c57bl6.idr	intron (NR_040374, intron 1 of 2)	intron (NR_040374, intron 1 of 2)	5065.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	4.13412628563843	3.60461124679624	4.04767277116097	3.55372611891045	3.42700594719514	3.92398835602442	4.44224136929673	3.85113239783704	0.289565128480738	0.592624033390689	0.822268734360933
Merged-chr6-118126769-4	chr6	118126663	118126863	+	892.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362149, intron 2 of 7)	intron (NM_001362149, intron 2 of 7)	12067.0	NM_001362149	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	4.63761083469974	4.87863483214058	4.55782720394357	4.74415775693382	4.42069125947113	4.60242043707366	4.76247738958911	4.46950300948398	-0.331716500667104	0.352845740042977	0.6597459002448
Merged-chr2-165402124-4	chr2	165402006	165402206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1712.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	7.43757862770536	7.55167889149046	7.6424433361902	7.61448205134361	7.50861586085915	7.57696703596436	7.05024126008398	7.14295825646619	-0.296916988138182	0.135512879196935	0.409808551765019
Merged-chr12-86825277-6	chr12	86825330	86825530	+	901.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	59384.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	3.23907576873493	3.27121679120259	3.23948695258014	3.3888723054116	3.29531393703625	3.16311507099772	3.22759721488319	3.11813310812962	-0.323097646929649	0.550086348490018	0.798372778972962
Merged-chr1-60669350-4	chr1	60669250	60669450	+	937.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77038.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	4.6271064947405	4.52673920077711	4.73736414468309	4.61118570015826	4.3026395966695	4.76063014803283	4.35659345097419	4.46256414929191	-0.341356503850056	0.354005437853637	0.660831376621657
Merged-chr17-70966240-4	chr17	70966069	70966269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24347.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	6.48019910976413	6.72669900320886	6.63746662246878	6.27634892299128	6.65809519872414	6.29604456909807	6.17169790183155	6.27920215181	-0.227562804555504	0.351922990228421	0.659146028510086
Merged-chr19-3699943-3	chr19	3699848	3700048	+	842.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8345.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	3.96111783334792	3.97847191119543	3.85257489928812	3.42852994982785	4.20946908444721	4.23902810513114	3.83681621314074	4.80764489994032	1.30448438421932	0.00769881436793378	0.0653774645544212
Merged-chr12-111559830-4	chr12	111559717	111559917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4c|LINE|L1	14585.0	NR_045295	100504687.0	Mm.26072	NR_045295	ENSMUSG00000096995	2810029C07Rik	AU017849	RIKEN cDNA 2810029C07 gene	ncRNA	6.62858776752882	6.91745996146777	6.58121239329524	6.64080295717245	6.73379192175882	6.80647007667608	6.81305087851386	6.85620999216917	0.144019744405052	0.478739938017193	0.754690163973656
Merged-chr7-127448742-4	chr7	127448621	127448821	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175163, exon 1 of 3)	exon (NM_175163, exon 1 of 3)	437.0	NM_175163	71131.0	Mm.474533	NM_175163	ENSMUSG00000048921	Zfp689	4933416E05Rik|Znf689	zinc finger protein 689	protein-coding	5.16705192885467	5.35537769073983	4.81841492365179	4.80518274658886	4.96902223923486	5.1090568782133	4.83507652431588	5.28086265442819	0.0118305848663813	0.972353302746252	0.990053526064604
Merged-chr2-153225267-6	chr2	153225180	153225380	+	945.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198617, exon 1 of 1)	exon (NM_198617, exon 1 of 1)	161.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	3.22040522693542	3.45266605234089	3.7810174071243	3.58489329015614	3.8365732989298	3.46716071679522	3.46140116415888	3.68459214633175	0.32148971912979	0.539976093782122	0.792440690679099
Merged-chr12-16811040-4	chr12	16810956	16811156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027677)	promoter-TSS (NR_027677)	91.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	5.88625707267797	6.04980881600727	6.18672391797176	6.1210111018257	5.6853390339091	5.44231194508369	5.40415680548765	5.81360652204779	-0.757423581802248	0.00391060892053114	0.039373097741448
Merged-chr10-117831080-4	chr10	117830990	117831190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	14884.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	6.26363516511811	5.89849664002324	5.98934921949681	6.12033461367492	6.08634454740862	5.8990015557133	6.06361902498597	5.89398444677614	-0.127660522479715	0.598053303786113	0.825700950899405
Merged-chr17-32891347-3	chr17	32891246	32891446	+	938.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207245, intron 1 of 3)	intron (NM_207245, intron 1 of 3)	257.0	NM_207245	240066.0	Mm.26636	NM_207245	ENSMUSG00000095325	Zfp870	AI173952	zinc finger protein 870	protein-coding	4.30639913624086	4.00988702958185	4.09217379542092	4.11614781648349	3.83609509770886	4.11813477446583	4.11991964405475	4.08969543943798	-0.249560741117818	0.551281706226368	0.798837168776829
Merged-chr8-22860261-3	chr8	22860157	22860357	+	934.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 1 of 17)	CpG	718.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	3.86157242933833	3.97034405547426	4.14355863187231	4.031006631932	4.00109724561721	4.08495836179369	3.79376477150802	3.80649477018394	-0.212301827250958	0.62467799235332	0.839581122865294
Merged-chr2-103982421-2	chr2	103982312	103982512	+	610.0	f0_balb.idr|f0_c57.idr	TTS (NM_001142337)	TTS (NM_001142337)	12125.0	NM_001142335	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	4.18518155334819	4.26017912640238	3.71478296468342	3.78873658787313	4.19142953858047	4.12100212908923	4.36719358684391	4.09231906517295	0.509709389672203	0.246766658747226	0.558013915016322
Merged-chr17-6106857-4	chr17	6106756	6106956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001103181)	promoter-TSS (NM_001103181)	26.0	NM_001103181	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	5.39511057152329	5.56524026035942	5.36210505512012	5.03671112368568	6.2211877347125	6.35205826207072	6.39132696855058	6.34301170920988	1.60966482903306	5.52146735597855e-10	3.71467414868806e-08
Merged-chr7-27606382-3	chr7	27606254	27606454	+	929.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331109)	promoter-TSS (NM_001331109)	557.0	NM_007434	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	3.46316474289289	3.4496922318803	3.5252345221997	2.90066738349138	4.04878985272902	4.06261826611203	3.73036944062859	3.93387797072588	1.93611786886937	0.000328047757719908	0.00546073698473932
Merged-chr17-45708414-4	chr17	45708307	45708507	+	738.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22058.0	NM_026732	68463.0	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	3.40901866363285	3.59558678328912	3.40941373031365	3.69542466477798	3.82036461918145	3.80938836719342	3.67627542427065	3.68936841954955	0.627530635698945	0.195802100750453	0.496672200168623
Merged-chr16-4757668-4	chr16	4757564	4757764	+	919.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357050, intron 1 of 5)	intron (NM_001357050, intron 1 of 5)	718.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	4.6475453350943	4.2673853148368	4.45430248393746	4.65621223365766	4.64685277547196	3.94439125770016	4.6260588170951	4.40889974605912	-0.172064910148779	0.679467487738401	0.868431457681343
Merged-chr15-6733227-4	chr15	6733180	6733380	+	882.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030168, intron 2 of 37)	intron (NM_030168, intron 2 of 37)	24899.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	3.97538549216331	4.33758058733711	4.39134814792129	4.66445003848835	4.26512519551447	4.04308606249992	3.90542189500091	4.17472381178294	-0.669189450688311	0.127941649803869	0.398030688298095
Merged-chr19-37180704-4	chr19	37180569	37180769	+	954.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045329, intron 2 of 2)	intron (NR_045329, intron 2 of 2)	-4606.0	NM_001290826	208922.0	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	4.93660550328521	4.58792448598459	4.83441797307827	5.12815633294523	4.72328984910993	4.49582142841302	4.97705626262702	4.59645555761696	-0.383467792608476	0.290842339320734	0.603119162906712
Merged-chr11-99073956-4	chr11	99073823	99074023	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172564, exon 7 of 13)	exon (NM_172564, exon 7 of 13)	15383.0	NM_172564	217169.0	Mm.262067	NM_172564	ENSMUSG00000017607	Tns4	9930017A07Rik|AA589547|AU016405|Cten	tensin 4	protein-coding	4.62299278018515	4.42452193821519	4.58528821958508	4.52436102207526	4.65596351823114	4.45470644348249	4.52474471388741	4.54267650746035	0.0343118174488504	0.922785408840845	0.971413012934631
Merged-chr3-126628719-4	chr3	126628633	126628833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	31782.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	5.98157621122185	6.04235191246626	6.32701406254478	6.24967108205403	6.01353817004705	5.80877404422833	5.81345632431893	5.83894889861214	-0.445915950271788	0.0694168222871036	0.281788304141149
Merged-chr16-5244671-4	chr16	5244560	5244760	+	921.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027446, exon 8 of 8)	3' UTR (NM_027446, exon 8 of 8)	11039.0	NM_145362	208211.0	Mm.34581	NM_145362	ENSMUSG00000039427	Alg1	HMAT1|HMT1	asparagine-linked glycosylation 1 (beta-1,4-mannosyltransferase)	protein-coding	3.91923440523833	4.12949038288627	4.17696888319495	4.25147127357624	4.19823534705257	4.20472429621068	4.40931344369571	4.46487077508101	0.456367288810905	0.257627061261239	0.569440392056059
Merged-chr3-133755129-3	chr3	133755019	133755219	+	964.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-210729.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	3.63190406990824	3.68241216244692	3.57658994277447	3.94224758493663	3.94898085258068	3.43902973398338	3.6712382077796	3.73507538244861	-0.0250514780841396	0.960056206752035	0.985737682958271
Merged-chr12-99640352-4	chr12	99640198	99640398	+	918.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12324.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	4.15947218103472	3.67570021223045	4.02136121271966	4.00011185911831	4.03013921640782	4.14529678337437	4.05160943117581	4.32134626725484	0.432550318874282	0.314530757775777	0.626465142785405
Merged-chr5-34660264-4	chr5	34660154	34660354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029278)	promoter-TSS (NM_029278)	-106.0	NM_029278	75416.0	Mm.40292	NM_029278	ENSMUSG00000036693	Nop14	2610033H07Rik|Nol14	NOP14 nucleolar protein	protein-coding	8.51396841543402	8.74214784299731	8.5202446446957	8.39698932459075	8.77715043423402	8.93071349106705	8.51958221174104	8.49994381024168	0.185722320481195	0.284746911828815	0.596538746087333
Merged-chr7-80883203-6	chr7	80883096	80883296	+	887.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18073.0	NR_152101	71968.0	Mm.274226	NM_028026	ENSMUSG00000025722	Wdr73	1200011I23Rik|2410008B13Rik|AI848574|C85352	WD repeat domain 73	protein-coding	3.6948165931198	4.14933967729596	4.0137557141169	3.8213673391454	3.82287481284353	4.03821149733178	4.1286853710832	4.05747113213704	0.227903657356827	0.606693258956136	0.829593003785543
Merged-chr12-86772204-4	chr12	86772088	86772288	+	886.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37819.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	3.95232576995792	4.57315522524886	4.06170802848026	4.2982372204836	4.22771096664444	4.23835604737521	4.40357524296951	4.42131677076776	0.172296171080806	0.678535196883916	0.868112820688421
Merged-chr17-80693018-4	chr17	80692917	80693117	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360278, intron 1 of 33)	intron (NM_001360278, intron 1 of 33)	35008.0	NM_001360278	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	4.50992068508145	4.78329403448878	4.38660938467765	4.32406333505387	4.5151203813077	4.42495438604156	4.27798432816767	4.09365150859237	-0.379252207380193	0.342771602297581	0.6516462545027
Merged-chr3-31109305-4	chr3	31109194	31109394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	14236.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	5.86925387892967	6.43914508348614	6.11707143807491	6.05982727954787	6.133384035637	6.25090504574307	6.0232809298324	6.22996319501619	0.0333687666582957	0.892446022592043	0.959713180874437
Merged-chr5-93205446-4	chr5	93205347	93205547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017367, intron 1 of 6)	intron (NM_017367, intron 1 of 6)	1048.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	6.55693100528415	7.0259711689825	6.43879224369414	6.59325672899762	6.75601240007977	6.76625643189321	6.27707797930335	6.56960771266059	-0.0959288663778722	0.692446256453204	0.87491802620234
Merged-chr17-48287033-4	chr17	48286924	48287124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-13014.0	NM_001033405	328833.0	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	5.81307538439457	6.31777538639209	5.91061383293712	5.93912053852253	5.97996829777674	5.99084650396135	6.13092197661005	5.90641118988576	-0.011274685929762	0.964337594798888	0.987309283922085
Merged-chr5-146780147-4	chr5	146780011	146780211	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	B4A|SINE|B4	14845.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	4.66819303924238	4.60832460132607	4.70856810110131	4.91365662607441	4.63266700651642	4.80269823187225	4.96314246684659	4.78115732813058	0.102377835571726	0.766060041659702	0.908502102755726
Merged-chr15-97212769-4	chr15	97212686	97212886	+	959.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34321.0	NM_172293	239647.0	Mm.130036	NM_172293	ENSMUSG00000044250	Pced1b	Fam113b	PC-esterase domain containing 1B	protein-coding	4.4174609457676	4.28939003068645	3.97694235923909	4.05555806824755	4.21928610838276	4.04622141571367	4.35965301297047	3.74612928957889	-0.188871848815866	0.671259401274309	0.864616305890251
Merged-chr3-38373895-2	chr3	38373795	38373995	+	863.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110921.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	3.46960339294828	3.0186014668175	3.23582617292491	3.65327737600655	3.31500660828347	3.348849578566	3.82014628855687	3.35642010853997	0.338781695572621	0.566671076420745	0.807951645949796
Merged-chr4-98367580-4	chr4	98367497	98367697	+	822.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053157, intron 4 of 6)	Lx|LINE|L1	15668.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	4.3039474113284	4.08372396224247	4.26141741238326	3.74941080606663	4.47716074324673	4.43322342381902	4.15210813323621	4.21406935769404	0.576689017294764	0.176793285664877	0.472016852225818
Merged-chr11-90220237-4	chr11	90220197	90220397	+	934.25415	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29179.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	4.08359296877927	4.4936800794667	4.68074299500565	4.20243009226059	4.02741220763002	4.04668098538699	4.01598955746988	4.26991687677916	-0.718231849889693	0.0925858989299453	0.332830057506737
Merged-chr11-32346480-2	chr11	32346380	32346580	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1331.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	3.33714616203836	3.05912785093859	3.0216483106567	3.26037434322228	3.33475268543421	3.61296328053148	3.20851933734535	3.54249098549617	0.890285358570613	0.107594585421315	0.361726572629124
Merged-chr1-86303108-2	chr1	86303008	86303208	+	728.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145222)	promoter-TSS (NM_145222)	-113.0	NM_145222	227327.0	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	3.01659214688858	2.75047789800005	3.01703283502803	2.69859292988869	2.79507271495026	2.67655172023993	2.77220950907884	2.78021512981768	-0.524035881010764	0.415287282161575	0.709530099060962
Merged-chr18-49500970-4	chr18	49500869	49501069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22320.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	5.72683364629857	5.50375365584682	5.70330076240391	5.83744510223308	5.41323684214284	5.51064450424093	5.89903399695958	5.72377549996485	-0.104454498418919	0.706411922594375	0.882026349021226
Merged-chr9-108662100-4	chr9	108662015	108662215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020520)	promoter-TSS (NM_020520)	17.0	NM_020520	57279.0	Mm.29666	NM_020520	ENSMUSG00000032602	Slc25a20	1110007P09Rik|C78826|Cact|mCAC	solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	protein-coding	6.17756076290097	5.97081721342321	5.78500161752271	5.50489177358679	6.20620833163035	6.08332251754669	6.20172026068417	5.99282526080134	0.41555411308029	0.120113799027492	0.383681734998781
Merged-chr1-88562575-4	chr1	88562464	88562664	+	981.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_037971)	TTS (NR_037971)	11047.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	5.18142817520396	4.94424670960129	4.81371639982971	4.85354159336362	5.08886750968022	4.91027080048436	5.00341588276856	4.84879735479655	0.0498666683306915	0.876852936995306	0.953810061776222
Merged-chr7-135537791-4	chr7	135537743	135537943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316678)	promoter-TSS (NM_001316678)	19.0	NM_001316678	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	5.82973006176034	6.00966803103428	6.02531610214242	6.02045070792355	5.43061518338932	5.66211284143848	5.95394403740904	5.44850731129451	-0.562430839658251	0.0360353343043356	0.188641543020395
Merged-chr14-21032317-4	chr14	21032200	21032400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009502, exon 21 of 21)	3' UTR (NM_009502, exon 21 of 21)	20142.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	8.3713776455356	8.52729667238368	8.32997998439081	8.35075775925706	8.24727253847664	8.33913644251019	8.14741934256223	7.9167928129894	-0.284762534024218	0.0869190829296985	0.321546009107059
Merged-chr17-29371501-2	chr17	29371385	29371585	+	558.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001159538, intron 9 of 15)	intron (NM_001159538, intron 9 of 15)	10571.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	3.46763357938822	3.45357437400901	3.06838496015376	3.18500224850663	3.31062302453801	3.24403777000242	3.18446026629412	3.19414220258045	-0.235357161520334	0.670267175706706	0.863963841647699
Merged-chr12-110698765-3	chr12	110698638	110698838	+	839.6333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2343.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	3.13271845331667	3.47544518944114	3.13305081776352	3.41000026574923	3.36966872252841	3.4315214211893	3.30658657069899	3.52908232702589	0.361781721634666	0.501691983425677	0.769345348333684
Merged-chr3-59241754-4	chr3	59241665	59241865	+	960.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 20 of 43)	intron (NM_177855, intron 20 of 43)	21220.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	5.62964008377901	5.34202813048834	4.86802019318558	5.37488489997268	4.84480055704799	5.26406627292505	5.03008629584422	4.78214962246595	-0.652030037919177	0.0553463037255683	0.245992010951455
Merged-chr11-88047653-4	chr11	88047566	88047766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173374, exon 1 of 4)	5' UTR (NM_173374, exon 1 of 4)	293.0	NM_173374	110809.0	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	7.10147751401524	7.43219033325658	6.97563854707293	6.6843926084203	7.47768490981126	7.60721319599435	7.33671310735943	7.22402494199384	0.476209702309153	0.0350718777862242	0.185521788714748
Merged-chr6-126921718-4	chr6	126921601	126921801	+	777.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207210, intron 1 of 14)	intron (NM_207210, intron 1 of 14)	138.0	NM_207210	101320.0	Mm.44896	NM_207210	ENSMUSG00000030345	Dyrk4	AW049118|Dyrk4a|Dyrk4b	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4	protein-coding	3.9702660639081	3.68517536802219	3.92702048588126	3.71961659315913	3.81002665667408	3.55512351467318	3.76867343897954	3.73061936353816	-0.293767892755881	0.527833930328948	0.784584092112251
Merged-chr8-79030514-6	chr8	79030330	79030530	+	916.1203609999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 1 of 14)	CpG	1993.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	3.88431882557049	3.59495497154233	4.00801499416643	3.51156837131367	3.24998392151443	3.65841908506084	3.46872448630925	3.22133662436193	-1.16043654915812	0.0334175447172017	0.179763256909439
Merged-chr8-71671737-4	chr8	71671654	71671854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029873)	promoter-TSS (NM_001029873)	3.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	6.4078141784847	6.28647405281653	5.83393816057251	6.45332265951605	6.50831754534727	6.29909128173846	6.26955236227325	6.56464447806854	0.208908420754679	0.397959437014733	0.696218718165258
Merged-chr8-120589270-4	chr8	120589187	120589387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178856)	promoter-TSS (NM_178856)	-212.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	9.49744435009079	9.67614451213375	9.51135395848066	9.33966263845301	9.27321497339015	9.5803207785485	9.45580112014345	9.2311224880454	-0.145715069839462	0.351831512415672	0.659093889162068
Merged-chr16-42876216-3	chr16	42876119	42876319	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040521)	promoter-TSS (NR_040521)	-457.0	NR_040522	75722.0	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA	6.89921504008742	6.45173845835585	6.96007694079312	6.55398405082177	6.34765613804876	6.55394982470076	6.22801862798751	6.39049505784755	-0.496730414660704	0.0339891656851931	0.181930728252847
Merged-chr19-23141616-3	chr19	23141521	23141721	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010638, exon 1 of 2)	5' UTR (NM_010638, exon 1 of 2)	395.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	5.559985950332	5.32434729321187	5.70475131877909	5.43721126905108	5.48671870587752	5.17453108525335	5.04657071230515	5.45115910434717	-0.342998971608173	0.251328325034722	0.56275122991118
Merged-chr6-40436083-4	chr6	40436027	40436227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356375)	promoter-TSS (NM_001356375)	8.0	NM_001356375	243780.0	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	5.72592405645776	6.11014519871315	5.98633868634361	6.04051461569306	5.63891942984422	5.73829163122467	6.01775095625953	6.00318245210107	-0.204446017228169	0.4298054816209	0.720626426084
Merged-chr16-94380674-2	chr16	94380574	94380774	+	947.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_009441, intron 1 of 45)	intron (NM_009441, intron 1 of 45)	-9659.0	NM_001159617	56176.0	Mm.474449	NM_019543	ENSMUSG00000022940	Pigp	Dcrc|Dscr5	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding	3.16875606257739	3.20354082286559	2.91283042412581	3.11109931840373	3.10904597602711	3.2200654212396	3.09860739286016	3.38094639473505	0.383097179949037	0.495181225155609	0.765566565829241
Merged-chr4-120925837-4	chr4	120925660	120925860	+	992.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160043)	promoter-TSS (NM_001160043)	-755.0	NM_001160043	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	4.86184307964943	4.98847513025421	4.93256454151328	4.59914580357809	4.64746779675927	5.20116216723244	4.60554432742019	4.85938181649031	-0.00122166492688477	0.997283457349235	0.998908860902246
Merged-chr11-46798492-4	chr11	46798367	46798567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12332.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	6.60197143836676	7.13357647892975	6.97542091308589	6.23014314179701	6.70769616142842	6.68382014984324	6.17433858858024	5.62587521961712	-0.58471967528674	0.0737058676020161	0.292404800462024
Merged-chr4-41390338-3	chr4	41390258	41390458	+	821.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290454)	TTS (NM_001290454)	38395.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	3.48729682138277	3.69467234393261	3.65622475092956	3.84226782976904	3.71455323896213	3.87608248377828	3.47539401229477	3.5445052791404	-0.0772332962610636	0.874960845045474	0.952974613103639
Merged-chr8-13758115-3	chr8	13758008	13758208	+	894.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357247, intron 1 of 16)	intron (NM_001357247, intron 1 of 16)	452.0	NM_001357247	69957.0	Mm.182412	NM_027276	ENSMUSG00000038416	Cdc16	2700071J12Rik|2810431D22Rik|APC6	CDC16 cell division cycle 16	protein-coding	3.35109332169885	3.56586241975648	3.62478406872803	3.39502821508249	3.26368910799084	3.52584251112511	3.65689039366223	3.40917944955194	-0.0612408639903025	0.905145321657431	0.964769973798357
Merged-chr5-91139605-3	chr5	91139505	91139705	+	988.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009704)	promoter-TSS (NM_009704)	6.0	NM_009704	11839.0	Mm.8039	NM_009704	ENSMUSG00000029378	Areg	AR|Mcub|Sdgf	amphiregulin	protein-coding	4.08170949510418	4.80319290587328	4.89722821183045	4.19385380308738	3.77539284996686	4.04423579137436	3.9584409899827	4.07986628353844	-1.43992163095438	0.00221515684385398	0.0252964301281377
Merged-chr7-55850956-4	chr7	55850875	55851075	+	898.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 1 of 30)	intron (NM_011370, intron 1 of 30)	8904.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	4.29132314573458	4.34751187474177	4.65354865576528	4.63659483966058	4.49110167868619	3.97957211120078	4.55996097589625	4.28936104310451	-0.329903344174475	0.418906548690086	0.712150249972705
Merged-chr10-19506623-4	chr10	19506504	19506704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152785, intron 2 of 2)	intron (NR_152785, intron 2 of 2)	11961.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	5.57680989839356	5.16292503573323	5.65313272972194	5.55934488558917	5.3027634951662	5.58715481540609	5.5236456912655	5.57384571183468	-0.0138338647493417	0.96157489002095	0.986252328551272
Merged-chr6-126910916-4	chr6	126910812	126911012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207210, intron 2 of 14)	intron (NM_207210, intron 2 of 14)	10927.0	NM_207210	101320.0	Mm.44896	NM_207210	ENSMUSG00000030345	Dyrk4	AW049118|Dyrk4a|Dyrk4b	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4	protein-coding	5.74829852708194	5.8929676276199	5.80045967753959	6.02924583896419	6.11026045270611	5.84644027407946	6.11748683667494	6.16345591924282	0.286414567001726	0.245050592514711	0.556170860493583
Merged-chr18-12643669-5	chr18	12643453	12643653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028341)	promoter-TSS (NM_028341)	20.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	4.95163382885975	5.08267037468597	5.02391753907046	4.81913587349757	4.95046310932671	5.29734900177877	5.03354507409832	5.48067067190817	0.449977560261182	0.162779463164964	0.452255606647826
Merged-chr10-81357489-4	chr10	81357413	81357613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028657)	promoter-TSS (NM_028657)	22.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	7.02994053452481	6.91446738114252	6.90477001384844	6.92588652232087	7.08464674137267	7.02720547798593	7.06554884523605	6.53200236808308	0.0114665754836091	0.956566104196385	0.984704877150836
Merged-chr15-78304029-3	chr15	78303929	78304129	+	944.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287389, intron 1 of 11)	intron (NM_001287389, intron 1 of 11)	1692.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	4.15667504860305	3.77917127583333	4.41048713284648	3.80454981604928	3.91138410042216	3.53721062762588	3.60217553453675	3.61359797090141	-1.07036042111268	0.0368228460606397	0.191119892066653
Merged-chr16-38475693-7	chr16	38475576	38475776	+	907.642883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359898, intron 2 of 5)	intron (NM_001359898, intron 2 of 5)	16743.0	NM_009855	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	3.34884599044204	3.66034898639762	3.34928165445584	3.04536456010446	3.36878459923319	3.33977022803294	3.44748517476002	3.56273967089917	0.240326427427117	0.661547061873257	0.859452900113265
Merged-chr13-99006402-1	chr13	99006302	99006502	+	1000.0	f0_balb.idr	Intergenic	MLT2B2|LTR|ERVL	-21837.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	5.60987119144283	5.49107208904413	6.26824472042884	5.8403151261147	5.32887627679213	5.67561245743848	5.44082901542661	5.87349883702359	-0.407149260863116	0.189358278035929	0.488240753999997
Merged-chr4-120935972-1	chr4	120935872	120936072	+	826.0	f0_balb.idr	intron (NM_001005788, intron 3 of 5)	intron (NM_001005788, intron 3 of 5)	-10967.0	NM_001160043	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	3.79606172144115	3.75605912081482	3.84203069463946	4.11448107323979	3.08873976531086	3.18981431007121	3.34959511927053	3.48243262954513	-2.16993772468889	0.000117664947978645	0.00232194991188578
Merged-chr19-47864906-3	chr19	47864820	47865020	+	701.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026619)	promoter-TSS (NM_026619)	-625.0	NM_030051	68214.0	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	2.68019144283629	2.54378131443644	2.88591808834133	2.46195347795939	3.19210288053253	2.99769728186136	3.20506121685589	2.94636847459365	2.12084336682202	0.0011197982731665	0.0147222241015365
Merged-chr7-13034089-2	chr7	13033989	13034189	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153796, intron 1 of 3)	intron (NR_153796, intron 1 of 3)	688.0	NM_001360733	68953.0	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik|mVps2	charged multivesicular body protein 2A	protein-coding	3.33531489205722	3.56991045518267	3.67188856768415	3.2278644734178	3.66090667385248	3.57351955846929	3.70391341916419	3.5671679345202	0.580878630198328	0.248347470502018	0.559438084779516
Merged-chr9-62952885-1	chr9	62952785	62952985	+	571.0	f0_balb.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	27994.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	3.56438206525952	3.64844529560753	3.35747787140313	3.00488229500401	3.46461083486721	3.22262913553498	3.28747574754855	3.03987655966152	-0.517213262625664	0.387659395220975	0.688489915228238
Merged-chr5-148465544-4	chr5	148465464	148465664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65660.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	5.09991865761702	5.35432664228984	5.10077597341505	4.70686801258461	5.71128479155762	5.38010213052567	5.51931649025461	5.61671316004899	0.902582221301238	0.00382007617788197	0.0386486201461508
Merged-chr9-69706076-4	chr9	69705967	69706167	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54873.0	NM_022378	64290.0	Mm.440890	NM_022378	ENSMUSG00000059246	Foxb1	C43|Fkh5|Foxb1a|Foxb1b|Hfh-e5.1|Mf3|Twh	forkhead box B1	protein-coding	5.25585887781718	5.49818497422803	5.58894896204263	5.36697340875814	4.74212864273034	4.71549749217309	4.8228279096464	4.80157472224159	-1.27742983803352	5.01537276059772e-05	0.00113474004363187
Merged-chr16-23452699-2	chr16	23452599	23452799	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008555, intron 15 of 15)	intron (NM_008555, intron 15 of 15)	23566.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	2.96183022855699	2.75348297917728	2.96223944125373	2.83076026149055	2.92389290723477	2.60305303997785	2.7748816599685	2.71759470937898	-0.508298754633932	0.431572344669209	0.721710551668303
Merged-chr5-81022198-7	chr5	81022128	81022328	+	888.4761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 1 of 27)	intron (NM_198702, intron 1 of 27)	635.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	4.52102449533514	3.88242385629322	4.34561872929343	3.89160553060621	3.69435337958145	4.22155214025417	3.98145555564357	3.59395578519377	-0.778542640644122	0.119244245433316	0.382052851354789
Merged-chr2-150218104-6	chr2	150217996	150218196	+	815.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142411)	promoter-TSS (NM_001142411)	-3.0	NM_001142411	245174.0	Mm.378428	NM_001142411	ENSMUSG00000060336	Zfp937	EG245174|Gm4979|ZIPO-I	zinc finger protein 937	protein-coding	4.52356034774428	4.08030011485787	4.60575477381009	4.51027052675956	4.60063189318296	4.61327838951561	4.89421017987431	4.78590367032026	0.611991564727697	0.100686565946282	0.348344323255697
Merged-chr17-87102625-2	chr17	87102534	87102734	+	793.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5045.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	3.533850996853	3.15202254450234	3.26675187651803	2.92209956520639	3.48774286168324	3.60313444019285	3.06559732442227	3.20430886177834	0.459696302664465	0.438302197146167	0.726330030804391
Merged-chr5-88676218-4	chr5	88676087	88676287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178700)	promoter-TSS (NM_178700)	-16.0	NM_178700	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	7.422625564403	7.33629035879228	7.30205575944035	7.56565958356829	7.48762643405023	7.18099744259076	7.67765000336029	7.38938033306528	0.041921607052155	0.827717724155027	0.933903677361406
Merged-chr1-36947659-4	chr1	36947569	36947769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8142.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	5.27671167734191	5.1792741534638	5.06475956610376	5.28048474993677	5.91960990924918	5.42284531840399	5.68725699770602	5.94403621615418	0.959098873569669	0.000805362939194363	0.0113044623642113
Merged-chr2-26930603-4	chr2	26930517	26930717	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011512, intron 1 of 5)	intron (NM_011512, intron 1 of 5)	2894.0	NM_011512	20932.0	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	5.16606342618097	5.25813161752039	4.8891922212159	4.96311635858018	5.28281351154968	5.24345087373601	5.17204601143535	4.84669163554016	0.151931409795097	0.632547450089894	0.843973166742038
Merged-chr5-107923043-4	chr5	107922939	107923139	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 2 of 4)	intron (NM_026062, intron 2 of 4)	22511.0	NM_016980	100503670.0	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	4.77030289542802	4.4602762544389	4.41109054172817	4.63231918802859	4.74334090849323	4.44443557843064	4.78216957439596	4.62047401389372	0.175190294406355	0.625005290610621	0.839667275308094
Merged-chr2-164493696-4	chr2	164493550	164493750	+	968.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026797)	TTS (NM_026797)	-3875.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	6.01627552130978	6.6764558559211	6.14554609922369	5.29672929564388	5.24195388056271	5.20507939631133	5.11055646452094	4.83617565639284	-1.71716214441264	5.03871801565741e-06	0.000148941407656345
Merged-chr15-86274364-3	chr15	86274263	86274463	+	897.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 4 of 12)	intron (NM_145476, intron 4 of 12)	-3312.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	3.5493539716084	3.37026377753744	3.64623987973868	3.62153576214318	3.28038784027508	3.3148162208945	3.2583854516295	3.4964272202883	-0.758037443463415	0.144932641064509	0.424118222368184
Merged-chr13-93355291-4	chr13	93355209	93355409	+	974.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147176, intron 4 of 9)	intron (NM_147176, intron 4 of 9)	47275.0	NM_152134	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	4.94927721469162	4.75922618749359	4.80697608915169	5.34648728714942	4.59996669492494	4.7362362127464	4.92609857021926	4.84107586571952	-0.470690877889148	0.189532535182875	0.488493910337177
Merged-chr3-79180940-2	chr3	79180840	79181040	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31979.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	3.36602369058767	3.48717955211026	3.1705721941788	2.81822683452517	3.41606414016675	4.07359666346405	3.57414316556038	3.42407296870055	1.39112657435011	0.0192051644526124	0.124454151545202
Merged-chr4-122835839-4	chr4	122835750	122835950	+	887.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008917)	promoter-TSS (NM_008917)	-377.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	3.93396941790428	4.19928789827408	3.77274681532153	3.86767551215985	4.04433618433665	4.29151932443587	4.01471122581199	3.82680778556903	0.27182194638872	0.537811524016612	0.791238016328278
Merged-chr2-152692086-4	chr2	152691981	152692181	+	868.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010376, intron 8 of 11)	intron (NM_010376, intron 8 of 11)	4933.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	4.3454619952303	3.83306370110075	3.98217602283582	4.47325431943859	4.03571349491299	3.87456631937802	4.28607540621447	4.34332211061221	-0.124431514964989	0.786244646335238	0.916858200191613
Merged-chr15-99835298-4	chr15	99835164	99835364	+	929.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 2 of 10)	intron (NM_001113545, intron 2 of 10)	-15115.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	4.82612558861074	4.42358478550341	4.474919401896	4.40724485222782	4.37614609911364	4.33165938231351	4.28222553693378	4.25102031932322	-0.515885689957689	0.180140496895285	0.476476660442342
Merged-chr5-63938829-4	chr5	63938701	63938901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145923, intron 1 of 6)	intron (NM_145923, intron 1 of 6)	30096.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	6.22141742414617	5.97923003324666	6.14529271816605	6.6114444669491	5.97498412004941	5.78908685016448	6.19061206815417	5.947754389714	-0.455017292444524	0.0873680198501301	0.322434976502057
Merged-chr4-130795116-4	chr4	130795014	130795214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	MIR|SINE|MIR	2577.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	7.02507168278804	6.54363042481494	7.3634402214391	7.25768145803148	6.99511158097254	6.91081992151623	7.19669805742512	7.41419659404389	0.0760928351960346	0.754875431629757	0.903502242272986
Merged-chr7-44952943-4	chr7	44952831	44953031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077591, intron 6 of 10)	intron (NM_001077591, intron 6 of 10)	9691.0	NM_011651	22116.0	Mm.84502	NM_011651	ENSMUSG00000059891	Tsks	Stk22s1|Tssks1	testis-specific serine kinase substrate	protein-coding	7.65456216265924	7.67549351478849	7.34217814602096	7.50589294165095	7.51702071158809	7.68591646349626	7.32639873493087	7.2390509140979	-0.128718333507574	0.502794196744946	0.769945404189203
Merged-chr12-3897347-3	chr12	3897261	3897461	+	941.738098	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271753, exon 11 of 23)	exon (NM_001271753, exon 11 of 23)	5617.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	4.15924683308246	4.07893166179523	4.64407665834569	4.84791947162767	3.90344505877144	3.88736402104029	4.14191471576843	4.49930454414662	-0.852532976298361	0.0720978819760649	0.288492116522604
Merged-chr2-22806504-3	chr2	22806378	22806578	+	756.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	32151.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	4.14811787215811	3.97397452088351	3.82730431688769	3.78742894033667	3.99262059044771	3.77768312732219	3.70491141409557	4.06313020168206	-0.10162978052319	0.82249221527791	0.932143478460956
Merged-chr16-58479177-4	chr16	58479106	58479306	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	44220.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	4.89807800612513	4.71422579010074	4.52865041709389	4.96389751804772	4.97295673577625	4.79909137903138	5.24159182073169	5.1237983791553	0.481050376744311	0.158135220981112	0.445038229250933
Merged-chr5-3344481-4	chr5	3344359	3344559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009873, exon 2 of 8)	exon (NM_009873, exon 2 of 8)	566.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	5.90895726295239	6.4120037753529	6.19024138108981	5.82259641537353	5.83442020323527	6.40326978338944	6.43344177109215	5.97610787348867	0.126767206768005	0.652963744998129	0.854849388534309
Merged-chr17-51209751-4	chr17	51209661	51209861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30409.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	5.06528435367957	5.14508991521565	5.24042193018993	5.74314270544423	5.74068327113341	5.4164338062558	5.30825323104858	5.44661516628891	0.249445691368975	0.449071242925897	0.734274602596307
Merged-chr15-101974680-4	chr15	101974574	101974774	+	973.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20387.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	4.58722903167957	5.16177097616466	4.94757476652372	5.29332803204741	5.37722618998814	4.89249210462122	4.88854242659272	4.83392555004273	-0.012682986506724	0.972614981275067	0.990142332587394
Merged-chr17-6697358-4	chr17	6697255	6697455	+	960.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183370, intron 1 of 12)	intron (NM_183370, intron 1 of 12)	8283.0	NM_183370	83672.0	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	5.17381333181316	5.40196337946261	5.37302739594453	4.67422639755551	4.82651076519434	5.25315688070007	4.91560610883809	4.82047231367694	-0.410353383850159	0.256862700338682	0.568614484897899
Merged-chr4-11580164-4	chr4	11580047	11580247	+	838.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256142, intron 1 of 1)	intron (NM_001256142, intron 1 of 1)	485.0	NM_001256142	100503583.0	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	3.70002869231249	4.03548053044857	4.12485939526571	3.97979595197084	4.23896936680805	4.2031839624906	4.31251065542411	3.927449732715	0.54580121056998	0.201242137661876	0.503556256669362
Merged-chr19-43530348-4	chr19	43530253	43530453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-5748.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	7.2041779280083	7.44545457179776	7.70102477766452	7.33274944577851	7.08694297494154	7.47126089389972	7.38899805425326	7.49533934630157	-0.0895044640480795	0.659487741210805	0.858318434118141
Merged-chr13-48965128-3	chr13	48965023	48965223	+	842.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033268, intron 1 of 17)	Tigger15a|DNA|TcMar-Tigger	2705.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	3.31328384897474	3.27355585612308	3.49935403800168	3.96005057784843	3.98236589463369	3.55526449719577	3.428053520953	3.75773776985359	0.440200625512387	0.446746205430968	0.732390901385851
Merged-chr9-27023795-4	chr9	27023680	27023880	+	980.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178027, intron 1 of 5)	intron (NM_178027, intron 1 of 5)	6314.0	NM_178027	69091.0	Mm.218717	NM_178027	ENSMUSG00000031988	Vps26b	1810012I05Rik|2310075A12Rik|AI848392	VPS26 retromer complex component B	protein-coding	4.94136859858419	4.75542721238869	4.94218836377049	5.37559772104466	5.24419378540557	4.92762021439356	4.55311737105753	5.16661937714674	-0.0664487023875489	0.857759701166795	0.946392149155271
Merged-chr12-80792325-4	chr12	80792229	80792429	+	871.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	1797.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	4.18551506787139	4.47942131063928	3.76341012953605	4.10809239517224	4.23186823039101	4.21726326481142	4.07512932548096	4.22786765891021	0.0759775950108753	0.860209114742112	0.947128143348069
Merged-chr9-21288627-2	chr9	21288527	21288727	+	888.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145416)	promoter-TSS (NM_145416)	-658.0	NM_145416	215194.0	Mm.290690	NM_145416	ENSMUSG00000035047	Kri1	-	KRI1 homolog	protein-coding	3.2648506917326	3.14579192396776	3.20731663204839	2.8046406173193	3.29682631404137	3.1278306159877	3.55001367317398	3.20561133502733	0.753721926469426	0.196073554868775	0.497090738068263
Merged-chr5-34549401-4	chr5	34549277	34549477	+	578.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145859)	promoter-TSS (NM_001145859)	-199.0	NM_001145859	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	3.81521864462841	3.47830008760689	3.22313525161107	3.46677791141156	3.97800533111168	3.72801302868413	3.70105078316602	3.99087142570911	1.06057190620721	0.033716175930129	0.180973055314882
Merged-chr5-105702077-4	chr5	105701978	105702178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	1268.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	5.58877216433416	5.96295855789959	5.75045653299824	5.80755696854727	5.78544855684784	6.06734561857655	5.77039926455492	5.97573977300701	0.176694270089937	0.489252120490453	0.761640239800318
Merged-chr12-78980880-4	chr12	78980773	78980973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178745, intron 1 of 2)	intron (NM_178745, intron 1 of 2)	2605.0	NM_001170401	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	7.81146431189176	7.38868135735048	7.64177484484203	7.77948660396322	7.47720788460067	7.3960285909973	7.64535730903307	7.40817075065063	-0.24191189269828	0.194761966436022	0.495371163442902
Merged-chr3-37361211-4	chr3	37361099	37361299	+	883.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008006, intron 1 of 2)	intron (NM_008006, intron 1 of 2)	12546.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	4.50091393342885	4.11206538986633	4.54152922521128	4.65491739130244	4.44292893057346	4.59057848542903	4.52040498396946	4.37114155805438	0.0067408888189081	0.986031838992607	0.994822966231818
Merged-chr13-112366905-4	chr13	112366806	112367006	+	808.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 9 of 11)	intron (NM_001168403, intron 9 of 11)	78388.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	4.44962975130193	4.41243044523741	4.24914866781332	4.36321709675902	4.08589470536053	4.2362820862228	3.82840166258796	3.89868437509541	-0.888683760497021	0.0328201186721709	0.177650435510757
Merged-chr4-47262188-4	chr4	47262077	47262277	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 9 of 39)	intron (NM_009928, intron 9 of 39)	54165.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	5.22596957695267	5.11416926562751	4.77929501771195	5.10684283151082	5.22845340803775	4.87351005794452	5.04810914150386	4.96712645858641	-0.0456199492264935	0.887057268323756	0.957632641284625
Merged-chr5-74957862-4	chr5	74957764	74957964	+	847.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045866, intron 2 of 4)	intron (NR_045866, intron 2 of 4)	8670.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	4.00510546788291	3.8512304529348	4.50425365381767	3.9495971401969	4.15514449890512	4.27594659974078	4.08569415746362	4.00334346779789	0.104312824473178	0.812802015339045	0.927656717651261
Merged-chr17-31996435-2	chr17	31996335	31996535	+	835.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028902, intron 6 of 7)	intron (NM_028902, intron 6 of 7)	38073.0	NM_028902	74377.0	Mm.75856	NM_028902	ENSMUSG00000002076	Hsf2bp	4932437G14Rik	heat shock transcription factor 2 binding protein	protein-coding	3.16840321452573	3.1817454055654	3.11343193382706	2.93355371609427	2.65714641026388	2.82791169209499	2.92143593779406	3.22002327942507	-0.766034093884578	0.232365427355269	0.541946192758711
Merged-chr11-69123629-4	chr11	69123552	69123752	+	974.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_033041)	TTS (NM_033041)	-2725.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	4.540862177918	4.75180508806591	4.24882531846163	4.22954490835404	4.88510766575203	5.05748442150225	4.56338172057516	5.20532440743042	1.04038617761205	0.00615456971861898	0.0552752531151469
Merged-chr3-79288284-4	chr3	79288177	79288377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57099.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	6.25216745625169	6.11351126842142	5.70784738989518	6.41525206000791	6.1567209516921	5.6826895338757	5.70584947081321	5.92800880697265	-0.41806772150936	0.138572432746628	0.414119317038113
Merged-chr18-76228149-4	chr18	76228053	76228253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13548.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	5.28567503012515	5.07687189773843	5.3829822745934	5.71714694200972	5.68387664034629	5.75772518538322	5.7035602030537	5.90368874447745	0.593197134955741	0.0470116698985278	0.222995503079761
Merged-chr15-98761320-4	chr15	98761224	98761424	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007478, intron 1 of 4)	intron (NM_007478, intron 1 of 4)	1668.0	NM_001355510	11842.0	Mm.221298	NM_007478	ENSMUSG00000051853	Arf3	5430400P17Rik|AI854770	ADP-ribosylation factor 3	protein-coding	5.55935625620825	5.36587740704041	5.19363746297928	5.29146387790998	5.26547993647952	4.99896085579931	5.03136071611493	5.60429569309684	-0.188259343540244	0.548770842156638	0.797649750024352
Merged-chr8-123028531-2	chr8	123028431	123028631	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	13753.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	3.63562742526384	3.49183835924434	3.23235457360724	3.24722325360938	3.43427172300381	3.47599151380946	3.57053156163512	3.81779048448638	0.583009741021204	0.260934666191493	0.572853883315165
Merged-chr11-87426447-4	chr11	87426375	87426575	+	963.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	intron (NM_031386, intron 1 of 30)	-1116.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	5.09257852188401	4.97451416435258	4.92067958554282	4.43697856378569	5.28639108022421	5.44489417286683	4.93314593026243	5.05723083331162	0.650324422096362	0.0645566871825578	0.270044689525581
Merged-chr17-33897288-4	chr17	33897211	33897411	+	835.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6678.0	NM_001195298	100502766.0	Mm.335713	NM_001195298	ENSMUSG00000079553	Kifc1	100042970|Gm4137|HSET|KNSL2|Kifc5a|Knsl2a|Tctex-7|Tctex-7A|Tctex7|Tctex7a	kinesin family member C1	protein-coding	4.0434518402051	4.27423677489764	3.93769409001606	3.77868719499391	4.23524962781639	4.44849978184967	4.02698426851324	4.57626824459138	0.812973300615017	0.0591540740537334	0.256275370849061
Merged-chr5-140411591-3	chr5	140411493	140411693	+	807.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7712.0	NM_133916	27979.0	Mm.21671	NM_133916	ENSMUSG00000056076	Eif3b	AL033316|AL033334|AL033369|AW208965|D5Wsu45e|EIF3-ETA|EIF3-P110|EIF3-P116|Eif3s9|PRT1	eukaryotic translation initiation factor 3, subunit B	protein-coding	3.54130468286034	3.49331969437972	3.59151103442938	3.5611296880771	3.42590072802099	3.08870974387018	3.3093194927229	3.43428025507881	-0.765130186630935	0.148338792485643	0.430071295027352
Merged-chr3-100440888-4	chr3	100440787	100440987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14482.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	6.73823348707405	6.04059151024332	6.30135807841313	7.0428404189309	7.17251252291536	6.69162869148083	7.30324327680705	7.15792545089025	0.696763103145237	0.0137392704198441	0.098682899012521
Merged-chr5-87204520-7	chr5	87204464	87204664	+	976.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	50224.0	NM_053215	112417.0	Mm.160362	NM_053215	ENSMUSG00000057425	Ugt2b37	0610033E06Rik	UDP glucuronosyltransferase 2 family, polypeptide B37	protein-coding	3.53043760475869	3.90053421851825	4.23600041353995	3.78076773290923	3.81797058996031	3.71503014541087	4.2533911975161	4.06807370047294	0.266632914274429	0.584691836851965	0.817725463637045
Merged-chr16-57211287-4	chr16	57211204	57211404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 4 of 17)	(TC)n|Simple_repeat|Simple_repeat	-9833.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	6.50364642404375	6.44003867541447	6.98287005608241	6.09340627078666	6.50545064176145	6.57778811525513	6.21531305252313	6.76852542486706	-0.000938788782981907	0.997237545063349	0.998908860902246
Merged-chr15-28405367-4	chr15	28405272	28405472	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 61 of 78)	intron (NM_133365, intron 61 of 78)	201606.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	4.77998015795947	4.31635296339798	4.70698856390241	4.99386726554476	4.67559656433004	4.53990519469208	4.60729684243081	4.8805873093748	-0.113799671727461	0.762637110881382	0.907011913026374
Merged-chr9-44568259-3	chr9	44568141	44568341	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36651.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	5.41475322813024	5.10982130246363	4.88022213891866	4.77526170976903	5.75540594002547	5.31894164159231	5.08274004491693	5.68110468936004	0.797986791276317	0.0187446424342743	0.122597161061215
Merged-chr7-102426496-4	chr7	102426427	102426627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 8 of 11)	intron (NM_009287, intron 8 of 11)	-15168.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	5.36369316276155	4.71327793118998	5.39274033119512	5.56095659829175	5.04626285887522	5.10828407453455	5.59205661933767	5.33213264683898	-0.0354319423258196	0.919567345744288	0.970343257381288
Merged-chr8-46756021-4	chr8	46755913	46756113	+	749.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	A-rich|Low_complexity|Low_complexity	16268.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	3.6165334506558	3.3842128042141	3.500660138248	3.61527392852584	4.17133007992389	3.41972571955438	3.93917244542933	3.82024792215815	1.00622747084643	0.0477059194345229	0.225310837995482
Merged-chr15-64075894-4	chr15	64075721	64075921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15373.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	7.76288919034782	7.99770719207756	7.87022700041931	7.75640284189353	7.75882641311285	7.87671548462828	7.71855985852488	7.66883209418633	-0.118413018076832	0.479603893210498	0.755309545209417
Merged-chr17-20945266-4	chr17	20945156	20945356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016891)	promoter-TSS (NM_016891)	-198.0	NM_016891	51792.0	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding	9.76054846669938	9.90536578551239	10.0370395715284	9.86998604268663	9.88465051675508	9.95063079353708	9.90864543338289	9.77124363244803	-0.0198969834216105	0.884150164794319	0.956393500663592
Merged-chr15-68060445-2	chr15	68060348	68060548	+	685.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	198408.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	4.28423443139596	4.37586009663746	4.05404678288975	3.89204969841165	4.19809662401042	4.22889729026524	4.3462552059576	4.05168347832855	0.143100168306034	0.733333498181923	0.894448261374724
Merged-chr10-37259262-4	chr10	37259152	37259352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120326.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	5.7907731275463	6.12307994392043	6.06226571479494	6.04682866256542	6.17237381196035	5.99288884879647	5.90399297694086	5.44445290921266	-0.157369212096284	0.564778269187756	0.806944325796203
Merged-chr17-56668972-4	chr17	56668915	56669115	+	927.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4210.0	NM_001252466	71810.0	Mm.29608	NM_027933	ENSMUSG00000002372	Ranbp3	2610024N24Rik|AA408221	RAN binding protein 3	protein-coding	4.35741945797945	4.39239871180155	3.95308215265556	4.32965822897533	4.36840273482522	4.61306369983364	4.29466081050667	4.6281636834475	0.476137350242026	0.227641916581465	0.53635063762613
Merged-chr12-84009870-2	chr12	84009770	84009970	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_012006, exon 1 of 3)	exon (NM_012006, exon 1 of 3)	368.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	3.93720741488676	3.81686621275414	3.68725546287868	3.47290257103315	3.98293890798941	3.80613654573386	3.77767395369708	3.79120765560706	0.358097417818105	0.444799390481988	0.731081677662176
Merged-chr7-121281043-4	chr7	121280955	121281155	+	955.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111241.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	5.44673391006735	4.54495817298359	4.66659623785236	5.23583870116564	4.85690827740127	4.66503659069412	4.87884825692666	5.00251664110877	-0.349045340614469	0.364521377358488	0.669279814395716
Merged-chr18-61176682-4	chr18	61176605	61176805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178277, exon 1 of 20)	5' UTR (NM_178277, exon 1 of 20)	344.0	NM_178277	106894.0	Mm.22574	NM_134134	ENSMUSG00000024622	Hmgxb3	2510002C16Rik|A630042L21Rik|AI413166|mKIAA0194	HMG box domain containing 3	protein-coding	5.54543499349494	5.44949132256793	5.8078598535601	5.38852303464399	5.29817900930307	5.49130431284317	5.49192146923772	5.37317796670976	-0.233814599437599	0.409488413738722	0.70507210627999
Merged-chr2-145122315-1	chr2	145122215	145122415	+	745.0	f0_balb.idr	Intergenic	IAPEz-int|LTR|ERVK	-45460.0	NM_001356497	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	3.39399301216568	4.4424591051966	3.69910817057534	2.84524890845642	2.79483835000868	2.79131276912045	2.83639682878167	2.84379838534232	-3.84076428989384	9.51684763617194e-06	0.000263230945447856
Merged-chr19-44555455-4	chr19	44555362	44555562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347447)	promoter-TSS (NM_001347447)	-20.0	NM_026061	67264.0	Mm.2060	NM_026061	ENSMUSG00000025204	Ndufb8	2900010I05Rik|AI987932|CI-ASHI	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8	protein-coding	5.81919695929945	5.54499037178521	5.1065860163867	5.5302856343288	5.65844509812157	5.7012614342055	5.52591511381974	5.57662065317419	0.158100181110385	0.581772404709926	0.816420227529328
Merged-chr14-118180414-4	chr14	118180304	118180504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43277.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	5.48622418506612	5.37808386443925	5.73642909507511	5.6243104578863	5.32403567775489	5.31969118412179	5.4867438139961	5.39790897281875	-0.321504344561066	0.246748007291197	0.557996069507865
Merged-chr7-24564810-4	chr7	24564721	24564921	+	846.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360168, intron 4 of 17)	intron (NM_001360168, intron 4 of 17)	13334.0	NM_001360169	22594.0	Mm.4347	NM_009532	ENSMUSG00000051768	Xrcc1	Xrcc-1	X-ray repair complementing defective repair in Chinese hamster cells 1	protein-coding	3.2999624784894	3.50924268241625	3.42661515979497	3.59931499535854	3.73335242617354	3.76523329512342	3.63271765874136	3.64569115315298	0.694647307720888	0.156142234081087	0.442017175944115
Merged-chr2-166018950-4	chr2	166018831	166019031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	26294.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	4.95147645030365	4.99649102664162	5.18036439335595	5.03801997694412	5.22679025419175	4.51282180361911	5.32035328654663	4.83732025964228	-0.0363925203885746	0.91788280418556	0.969760089182615
Merged-chr15-97945444-4	chr15	97945340	97945540	+	805.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18789.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	3.99483786113247	4.12325337274685	4.38685559545085	3.79349606247847	4.12309530875514	4.31085038259652	3.92747340617206	4.0428962000688	0.073814226905788	0.867386289728284	0.950313421774078
Merged-chr2-125775143-4	chr2	125775043	125775243	+	876.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177608, intron 2 of 17)	intron (NM_177608, intron 2 of 17)	7727.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	4.30345683729626	3.87536390032394	4.30414697704932	4.47575036733351	3.73982782394102	3.99185147253179	4.11050393177346	4.34164683616746	-0.528556899075439	0.246624045128366	0.557845724670417
Merged-chr5-21132129-4	chr5	21132046	21132246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44133.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	7.72918726139786	7.61098161293335	7.76919335005784	7.87074921047145	7.46223261762322	7.53450073986565	7.6200771056401	7.45400303311175	-0.312297700794554	0.0680832175797605	0.278559254130584
Merged-chr7-114892841-4	chr7	114892735	114892935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55815.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	5.7617626560141	5.95128131741372	5.76277305815347	5.69750435178889	5.77439561878997	6.1821135023331	5.54875885677502	5.78315545346783	0.0721097304391954	0.788822428416789	0.918193420999835
Merged-chr19-44930221-4	chr19	44930132	44930332	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081225)	promoter-TSS (NM_001081225)	-887.0	NM_172638	226151.0	Mm.212609	NM_172638	ENSMUSG00000036097	Slf2	3632432H19|Fam178a	SMC5-SMC6 complex localization factor 2	protein-coding	4.45155324956469	4.61685423869633	3.94899652611623	3.77705425913848	5.02702099833144	4.95240347229976	4.20531684222738	4.06329035278886	0.87015299996946	0.0831105959362898	0.313299920990847
Merged-chr3-152340197-4	chr3	152340098	152340298	+	988.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162375, intron 1 of 13)	CpG	209.0	NM_174868	215708.0	Mm.135018	NM_174868	ENSMUSG00000054942	Miga1	A930038D06|AI852168|C030011O14Rik|Fam73a|Mita1	mitoguardin 1	protein-coding	5.01285260823174	4.75508368882889	4.81433621164916	4.55407602803395	4.84829692455458	4.57339753890489	4.32331947439008	5.09899783612987	-0.0740232960555671	0.846825917058424	0.942018787399771
Merged-chr5-31468010-4	chr5	31467903	31468103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360001, intron 5 of 12)	ORR1E|LTR|ERVL-MaLR	15567.0	NM_001360000	269639.0	Mm.259127	NM_172993	ENSMUSG00000062761	Zfp512	2500002M11Rik|AI450173|D230008H22|Znf512	zinc finger protein 512	protein-coding	6.93713046939369	6.71842018872208	6.88614818702212	7.2453884384298	6.59947733636575	6.5650757065755	7.01281113204526	7.01979533290108	-0.222577246519449	0.339238905799515	0.64856399441067
Merged-chr3-51197317-4	chr3	51197203	51197403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27144.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	7.62609364882953	7.48675485234709	7.82590882363264	7.39356515950865	7.16010295957156	7.50707662310305	7.45955583734456	7.10734835799802	-0.360383345052839	0.073550318022142	0.292144982505471
Merged-chr2-160214768-4	chr2	160214670	160214870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	112724.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	7.45112135340183	7.45907228879415	7.90893073867068	7.57634083186536	7.23232927370157	7.49750957676593	7.58641487584717	7.53134196145695	-0.194876806783925	0.321153325881383	0.632890516983054
Merged-chr4-150316751-3	chr4	150316646	150316846	+	779.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	MIRb|SINE|MIR	34830.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	3.5177108508087	3.51123950006825	3.35506615079229	3.40432908651941	3.213554493848	3.3457275540521	3.60044372350241	3.23216314374357	-0.327185997528099	0.533889926622602	0.789042708189764
Merged-chr2-105016974-4	chr2	105016767	105016967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145380, intron 1 of 10)	CpG	160.0	NM_145380	98221.0	Mm.379278	NM_145380	ENSMUSG00000027170	Eif3m	Ga17|Pcid1|Tango7	eukaryotic translation initiation factor 3, subunit M	protein-coding	5.71822077509063	5.58703879537838	6.51727516535191	5.70452770876016	5.51201512720664	5.87062317651338	5.4655720531158	6.23783481059713	-0.203502204224976	0.551406737356163	0.79892812604468
Merged-chr12-8924512-4	chr12	8924419	8924619	+	964.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008640, intron 1 of 6)	intron (NM_008640, intron 1 of 6)	3212.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	4.42757819424454	4.48560090590136	4.83537719526765	4.88576459488905	4.83521043561375	4.86080434304949	4.97381252559794	4.47244246681197	0.233450080646179	0.527778261109936	0.784574591591773
Merged-chr13-23572499-4	chr13	23572390	23572590	+	878.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178196)	TTS (NM_178196)	1090.0	NM_178196	319181.0	Mm.261673	NM_178196	ENSMUSG00000058385	Hist1h2bg	-	histone cluster 1, H2bg	protein-coding	3.98698363939804	3.60423927362346	3.73825878781168	4.00556477107446	3.70104453585603	3.96448841119827	3.92438466850712	3.93907655178218	0.0758651488642432	0.869132972558298	0.950890741040292
Merged-chr1-85598315-1	chr1	85598215	85598415	+	643.666687	f1_balb.idr	intron (NM_030194, intron 1 of 11)	intron (NM_030194, intron 1 of 11)	495.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	2.40328836082658	2.37107541799752	2.52229549909924	2.26838552679767	2.06174421836213	2.14843753970078	2.26556009080159	2.20127628160806	-1.49427585805987	0.0640064096595813	0.268748226610458
Merged-chr4-145222190-4	chr4	145222086	145222286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 8 of 9)	intron (NM_011610, intron 8 of 9)	24684.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	6.92019171538055	6.54039894441041	7.62167822030937	7.64006886542223	7.10839516756612	6.88842001278351	7.44050317884934	7.70890921083422	0.0746998731613345	0.802306016412803	0.923812866076434
Merged-chr4-149980108-4	chr4	149980008	149980208	+	866.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173371, exon 5 of 5)	3' UTR (NM_173371, exon 5 of 5)	23128.0	NM_001291004	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	4.15869553412662	4.193642968431	4.393466758658	3.62833824705639	3.76984442761048	3.94014020489373	3.68705160707112	4.06794380941451	-0.658279274008984	0.178052555077869	0.473836973534737
Merged-chr8-126695640-4	chr8	126695553	126695753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102217.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.60067970764169	5.72310406925	5.54976193413954	5.02947509996156	5.66526381176308	5.58531213645806	5.46799664269132	5.28205902614331	0.0479814854098793	0.878486418138192	0.95458033366397
Merged-chr5-139324979-4	chr5	139324883	139325083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 1 of 10)	intron (NM_172723, intron 1 of 10)	481.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	5.72909883093862	5.96622544028076	5.52292307746881	5.55150878207005	5.78959228094762	5.42056790736238	5.24969357169946	5.67738568293824	-0.23244720834002	0.429049664568059	0.720012403024634
Merged-chr8-125066609-2	chr8	125066510	125066710	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 1 of 12)	intron (NM_174854, intron 1 of 12)	12415.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	3.62694763349878	3.74523766189045	3.3976011625986	3.45435800612624	3.46113089616584	3.5730588437971	3.93137913410846	3.77481344273735	0.427548728249245	0.391941859716448	0.691623810217842
Merged-chr18-57965632-2	chr18	57965532	57965732	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86954.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	2.97837413882147	3.04914740258799	2.92154784804424	2.79854027175987	2.66502952090378	2.61625971391671	2.85135603384395	2.79748058551675	-0.95594173250026	0.139206696288019	0.414863232083609
Merged-chr13-113920158-3	chr13	113920050	113920250	+	938.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	125642.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	3.2671493677028	3.37657718231567	3.55090011234503	4.06680151052187	4.17507228547585	3.85324840388213	4.28972934229854	4.23471177087542	1.45098133287082	1	1
Merged-chr9-96196272-4	chr9	96196174	96196374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001184708)	promoter-TSS (NM_001184708)	-1.0	NM_001184706	211586.0	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	8.14319320472412	7.84376795988283	7.96802276178944	8.28716667468656	8.05239325114	7.92349092751725	8.3331899573591	7.97664524870989	0.0050839044222737	0.978217494124211	0.992255358465873
Merged-chr6-117917052-4	chr6	117916970	117917170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166427)	promoter-TSS (NM_001166427)	-224.0	NM_001166427	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	6.8246207058955	7.03357711719407	7.20533220793062	6.91544542062116	6.97654485043625	7.03077926475668	6.88708348694156	7.07866568973663	-0.00490894765354281	0.980036342602756	0.992772119265666
Merged-chr1-87281817-3	chr1	87281703	87281903	+	860.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028889, intron 1 of 3)	intron (NM_028889, intron 1 of 3)	17450.0	NR_151447	98363.0	Mm.247951	NM_028889	ENSMUSG00000026255	Efhd1	4931430I01Rik|AI452351|PP3051|mitocalcin	EF hand domain containing 1	protein-coding	3.95484911619656	4.1183091485688	4.22557484591769	3.9868275614441	3.96560485016461	3.97126806880813	3.83638881705757	4.13961568738987	-0.239132311891653	0.573595523749425	0.811888602285473
Merged-chr12-3778401-3	chr12	3778318	3778518	+	748.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027870, intron 18 of 19)	intron (NR_027870, intron 18 of 19)	-28562.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	4.09837642338711	3.84847313383091	3.95541407370822	4.4494267054687	3.73972607996543	4.1283850764965	3.88800678322572	4.09647010646426	-0.424554690246547	0.361319860845688	0.66667409966046
Merged-chr2-133495648-4	chr2	133495551	133495751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56508.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	7.30693144654058	6.58574194321836	7.21758948897408	7.33589598635605	6.66584630860117	6.44614304004232	7.34673214523965	6.76571075591989	-0.408869033390247	0.134737765440878	0.408602721099257
Merged-chr10-60933950-1	chr10	60933850	60934050	+	634.0	f0_balb.idr	intron (NR_033616, intron 1 of 2)	intron (NR_033616, intron 1 of 2)	4182.0	NR_033616	73616.0	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	3.48597775702785	3.45560344184764	3.5407567864722	3.35026318448176	3.5560651843212	3.35595681722285	3.4729087736721	3.779650606211	0.330563590151174	0.508255671352415	0.773396125844835
Merged-chr17-34959368-4	chr17	34959240	34959440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010478)	promoter-TSS (NM_010478)	-102.0	NM_010478	15511.0	Mm.372314	NM_010478	ENSMUSG00000090877	Hspa1b	Hsp70|Hsp70-1|Hsp70.1|hsp68	heat shock protein 1B	protein-coding	6.72361770368024	7.36842252681474	7.60120958676788	6.1987689252079	7.05813881854076	7.16918746773012	7.04169086522614	6.93518760215228	-0.038420018992783	0.899369780026542	0.962548928270847
Merged-chr5-98692225-1	chr5	98692125	98692325	+	841.0	f0_balb.idr	intron (NM_001024614, intron 3 of 5)	MLT1C|LTR|ERVL-MaLR	-162190.0	NM_173404	110075.0	Mm.136461	NM_173404	ENSMUSG00000029335	Bmp3	9530029I04Rik	bone morphogenetic protein 3	protein-coding	3.07766981382764	3.11479605849109	3.18910746547166	3.30267745111457	2.92395249736875	2.85543906852878	2.66844479496254	3.13308225893873	-1.1618940372112	0.0686252911461499	0.279828116320566
Merged-chr4-150113074-3	chr4	150112974	150113174	+	876.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6270.0	NM_019741	56485.0	Mm.260220	NM_019741	ENSMUSG00000028976	Slc2a5	AI526984|Glut5|Slc5a	solute carrier family 2 (facilitated glucose transporter), member 5	protein-coding	3.11745950180222	3.20803061195075	3.1177940245553	3.04245515288706	3.90364634477784	4.17129985254322	3.4315534039533	3.55534801451033	2.275729881396	3.17100404522829e-05	0.000761102335157894
Merged-chr11-59227554-1	chr11	59227454	59227654	+	1000.0	f1_balb.idr	intron (NM_007476, intron 1 of 4)	CpG	608.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	3.68919255632347	3.79285881067363	3.80122339756909	3.43453430534134	4.08368474332897	4.02704664996138	4.0689944345287	4.08526116314259	1.13643693086869	0.0103802514510096	0.0811127366375463
Merged-chr4-155489433-4	chr4	155489351	155489551	+	852.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1910.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	3.79445068227986	3.79585893963659	3.90125113345121	3.71387142884486	3.96683028209573	4.02377721186901	4.02796049144418	4.32738871536341	0.813259819289914	0.0578947870771366	0.252589881666118
Merged-chr14-64187551-4	chr14	64187450	64187650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 4 of 4)	intron (NM_001253715, intron 4 of 4)	83227.0	NM_028525	73382.0	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	5.15725850007414	5.34130382757532	5.3154222976154	5.60081946858131	5.07316774832334	5.29991033176894	5.28905572775724	5.18763447769543	-0.317357586666377	0.292074308613499	0.604488172040016
Merged-chr1-95674240-3	chr1	95674144	95674344	+	851.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-6650.0	NM_001159745	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	3.54612606190082	3.90571734932554	3.60575343575725	4.37804055933678	3.43879755868906	3.60129370961474	3.85029811476134	3.66041169870434	-0.812921507941346	0.133819412128106	0.40728318877438
Merged-chr8-116268882-4	chr8	116268795	116268995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-236120.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	5.43058263102585	5.23468115150297	5.6229713484038	5.67455295755624	5.72806322676232	5.41954649849655	5.94372455419106	5.23737898162932	0.182000069450349	0.553955606035696	0.800500121223594
Merged-chr10-116513464-4	chr10	116513401	116513601	+	862.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037848, intron 4 of 4)	intron (NM_001037848, intron 4 of 4)	14448.0	NM_001359253	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	4.01758901422476	3.90441505779727	3.75034135448822	4.3093714900434	4.28469644135125	4.14101017686933	4.09346243968755	3.86198707931604	0.205120054533299	0.653622378163575	0.855122647012202
Merged-chr6-54078426-4	chr6	54078343	54078543	+	764.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	38511.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	3.65679487183759	3.83200363170157	3.718293498361	4.40680159847516	4.09259925258476	4.0601064682139	4.19069035464181	4.03286605984297	0.340387125535836	0.49308862512308	0.764001251274968
Merged-chr8-25067507-4	chr8	25067417	25067617	+	890.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 3 of 11)	intron (NM_031257, intron 3 of 11)	-28555.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	4.46633231431137	4.45542272407987	4.69720389099284	4.98256178478325	4.29058400860477	4.50990414770773	4.40432483955991	4.01825554222503	-0.842947506976988	0.0377842613443018	0.194352214064609
Merged-chr8-13965107-3	chr8	13964988	13965188	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361630, intron 2 of 3)	intron (NM_001361630, intron 2 of 3)	9689.0	NM_173744	72148.0	Mm.5727	NM_173744	ENSMUSG00000050052	Tdrp	2610019F03Rik	testis development related protein	protein-coding	3.91386675193943	3.40948256422248	4.45431602673771	3.60395791761275	3.7574731713886	3.76946273934282	3.74578594677533	3.86303542765848	-0.332989310222407	0.534233735054453	0.789066961676578
Merged-chr6-145149240-4	chr6	145149140	145149340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361633, intron 4 of 16)	intron (NM_001361633, intron 4 of 16)	3765.0	NM_001361633	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	6.80763991648018	6.2441069290479	7.14820958152369	7.36492466530792	6.37559608799187	6.21770133094115	6.40273704498888	6.39454806088357	-0.884455427091253	0.00152002757580354	0.0188754436179554
Merged-chr1-135740442-4	chr1	135740347	135740547	+	897.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153810, intron 2 of 3)	(CAAAC)n|Simple_repeat|Simple_repeat	11280.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	4.65472102600362	4.41107926144603	4.98675586311561	4.32197241424534	5.81887225303048	5.51239102324095	5.31035112228163	5.63078590119836	1.88631345897623	1.94321278422126e-08	9.77497828749718e-07
Merged-chr11-83065034-4	chr11	83064942	83065142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011408)	promoter-TSS (NM_011408)	-70.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	7.58849852061591	8.02838710768559	6.9329813245274	6.57081790307891	7.54129108413604	7.82443913257594	7.2724531315517	6.87027855952489	0.0204212576878676	0.967118364972268	0.988455138025123
Merged-chr13-34007436-4	chr13	34007316	34007516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009068, intron 1 of 10)	intron (NM_009068, intron 1 of 10)	4542.0	NM_009068	19766.0	Mm.374799	NM_009068	ENSMUSG00000021408	Ripk1	D330015H01Rik|RIP|RIP-1|Rinp|Rip1	receptor (TNFRSF)-interacting serine-threonine kinase 1	protein-coding	5.16018808730614	5.1860349170877	5.01574412760163	5.60369137345428	5.54473764426832	5.33784981087767	5.38309504887091	5.66107201095737	0.358181976243847	0.254703063742988	0.566151176984747
Merged-chr11-88998484-4	chr11	88998419	88998619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009546)	promoter-TSS (NM_009546)	-884.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	5.6033473132311	5.45997577996863	6.04542362051073	5.92510860420076	5.36317305920474	5.38494069312171	5.34649239457597	5.77287343960577	-0.521991511930529	0.0784359973326744	0.303143609390369
Merged-chr8-105827726-1	chr8	105827626	105827826	+	1000.0	f0_c57.idr	promoter-TSS (NM_024445)	promoter-TSS (NM_024445)	-18.0	NM_024445	72236.0	Mm.386810	NM_024445	ENSMUSG00000031893	Tsnaxip1	1700016K08Rik|TXI1	translin-associated factor X (Tsnax) interacting protein 1	protein-coding	6.34241049145539	6.5087520808162	6.07481729337695	5.96721848130482	6.58787124777011	6.57481577522441	6.83375894560915	6.70753361950346	0.661243695186545	0.00508050631845804	0.0480835111213314
Merged-chr5-124531065-7	chr5	124530909	124531109	+	970.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021430, exon 1 of 7)	5' UTR (NM_021430, exon 1 of 7)	382.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	3.94047859587622	4.22597564940654	3.82998509310578	3.7772933051695	4.29374562494461	4.43865479296139	3.75679970395328	4.42149158637183	0.779237449076162	0.0870146903586486	0.321708480389135
Merged-chr2-23069222-6	chr2	23069119	23069319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001102438, exon 1 of 13)	5' UTR (NM_001102438, exon 1 of 13)	147.0	NM_001355638	74159.0	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	6.12036312401205	5.73115615355196	6.42558140414765	6.1860561389138	6.10061335799146	5.89925073398613	5.8944439998287	6.42097194331449	-0.0601223020818829	0.825623071100896	0.933134099875256
Merged-chr11-5734570-4	chr11	5734458	5734658	+	964.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	intron (NM_001361588, intron 1 of 6)	6618.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	4.77656486434528	5.13162839765878	4.51868980160674	4.60421686517992	5.05777359375438	4.99042528562716	5.00073952412069	5.02198935034589	0.489746765126968	0.151662265328248	0.435394344360064
Merged-chr3-105880466-3	chr3	105880367	105880567	+	830.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	MTE2b|LTR|ERVL-MaLR	9609.0	NM_001174169	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	3.77191367060778	3.27097295071248	3.66978876130413	3.58610362438251	3.67464993825819	3.67596883942871	3.97895570220806	3.81853991496331	0.627235400438235	0.200061150998422	0.502008519065359
Merged-chr3-142570863-3	chr3	142570751	142570951	+	955.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355403, intron 10 of 11)	intron (NM_001355403, intron 10 of 11)	10495.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	4.10781750165395	3.5711540882516	4.15179046291989	4.1268887697583	3.67273063091243	3.81718124191563	4.04550202130928	4.27061540097444	-0.117942038919886	0.80819259924337	0.925984046103139
Merged-chr1-144203107-4	chr1	144203011	144203211	+	956.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25739.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	4.79864352772612	4.36940420461984	4.64598735750704	5.29790773147891	4.54827102606038	4.34706127048891	4.58333387071178	5.1683418165725	-0.285978006443899	0.511544659190415	0.775482659180767
Merged-chr7-123312064-4	chr7	123311969	123312169	+	845.470825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 8 of 19)	intron (NM_001316713, intron 8 of 19)	57846.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	4.64579528429944	4.33404867112223	4.43334678224681	4.58754037442646	4.69352303033677	4.73976506000027	4.96374095683433	4.7915219712989	0.613053736953529	0.0797425739316312	0.305781679246886
Merged-chr7-35683990-4	chr7	35683899	35684099	+	993.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36517.0	NM_019746	56330.0	Mm.371609	NM_019746	ENSMUSG00000030417	Pdcd5	2200003D22Rik|AA408513|Tfar19	programmed cell death 5	protein-coding	5.21789746807421	5.37250481933854	5.18708226278314	5.69888885402285	5.07439672857629	4.44288760279834	5.51931275308509	5.15102172177027	-0.535057077988074	0.154099679376265	0.439255980069809
Merged-chr16-10897530-4	chr16	10897395	10897595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17302.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	5.79715837103148	6.22674004817376	6.69368348626906	6.27213644185434	5.8814795766423	6.00500455059635	6.56288608258861	6.43892555775568	-0.0535644970542093	0.855642963949622	0.945715901857588
Merged-chr9-100499110-3	chr9	100499010	100499210	+	810.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 2 of 3)	L1M4|LINE|L1	7746.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	3.73869633506134	4.25465681943981	4.19082002705335	4.47393856020638	3.77377849204422	4.08236539968197	3.78330706895002	3.95711734340248	-0.815455852338116	0.0807462001431842	0.308231016151519
Merged-chr17-10444748-1	chr17	10444648	10444848	+	705.5	f0_balb.idr	intron (NM_027032, intron 4 of 4)	(TG)n|Simple_repeat|Simple_repeat	-11468.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	2.76662243035301	2.85584887974541	2.82447264508615	2.76126220293662	2.39483734982261	2.61120409465829	2.42812640925249	2.50647709156096	-1.80456321242212	0.0130188617739857	0.0950820400380187
Merged-chr10-51435871-4	chr10	51435751	51435951	+	941.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44761.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	5.0272392416854	4.4601472522907	4.65659090897329	5.09849642946833	4.86571645941787	4.79185707128555	4.9036627100988	5.33616367860462	0.279728823095036	0.452391932759254	0.736755126828417
Merged-chr2-160136993-4	chr2	160136895	160137095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	120342.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	5.70219197954098	6.0951548252138	5.60311616884207	4.98432739462983	5.64406946146555	5.55332830304303	5.18446368462996	5.6248832777137	-0.223624430207059	0.521978789148855	0.7817525755964
Merged-chr6-39781526-4	chr6	39781418	39781618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29418.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	5.15091195418095	5.1773855024044	5.48577915337193	4.717274319739	5.50338415097903	5.76063142065116	5.48415593608707	5.48188542042528	0.754132980815337	0.0182815039722472	0.120576276060099
Merged-chr10-21809708-4	chr10	21809561	21809761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72523.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	5.80013926520065	5.9451321270635	5.98753158013547	5.87391930893478	6.22986479338979	5.7910698758553	6.22694991624515	5.87012496914558	0.243254176210483	0.334565386303815	0.645071328704234
Merged-chr16-21637537-4	chr16	21637390	21637590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	RMER1B|Other|Other	57175.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	6.93682530188696	6.74754632818766	7.66717292064228	7.47585171528195	6.90196081487978	6.87924452841088	7.42509375933648	7.12147081234357	-0.225131958063597	0.392486593394645	0.691933206965634
Merged-chr5-129586187-4	chr5	129586075	129586275	+	953.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011846, intron 1 of 9)	intron (NM_011846, intron 1 of 9)	2006.0	NM_011846	23948.0	Mm.42047	NM_011846	ENSMUSG00000029436	Mmp17	MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding	4.93500918021563	4.89378291617722	5.06730027754823	4.97073338159617	5.06665438748747	4.75751755778604	4.64577946752128	4.93251162772189	-0.189070325532189	0.565717116980837	0.807708329369941
Merged-chr9-89705055-4	chr9	89704977	89705177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025360)	promoter-TSS (NM_025360)	-34.0	NM_025360	66111.0	Mm.27606	NM_025360	ENSMUSG00000032353	Tmed3	1200002G13Rik|AW546672|P24b	transmembrane p24 trafficking protein 3	protein-coding	7.56948624604439	7.71983860657361	7.6327206721858	8.08248314099072	7.74715146403845	7.43048909388776	7.79387942143609	7.64464008363141	-0.151067659816655	0.446419900374301	0.732119961404325
Merged-chr15-5447059-4	chr15	5446949	5447149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49269.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	6.73391687906841	6.57459434134584	6.79217277243608	6.78234576645875	7.17625789634038	6.77335487164206	6.62594916738405	6.4899075915696	0.116410315685729	0.618166732424396	0.835863676650469
Merged-chr5-64092954-4	chr5	64092834	64093034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356964)	promoter-TSS (NM_001356964)	-5.0	NM_025700	66681.0	Mm.2325	NM_025700	ENSMUSG00000029171	Pgm1	3230402E02Rik|Pgm-1|Pgm2	phosphoglucomutase 1	protein-coding	6.22212953505363	6.215703696635	6.2232296812914	6.21238055485811	6.06379834450041	5.95158178130601	6.29966109710908	6.09967247483029	-0.165972972321051	0.467677634193629	0.747089777913468
Merged-chr16-77084287-4	chr16	77084193	77084393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 17 of 23)	intron (NM_013918, intron 17 of 23)	70224.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	7.76030457629254	8.12102873925807	7.83275392906879	7.94430805808677	8.02645451828796	8.04811051288269	8.08124058286296	7.8502992694797	0.102261056896952	0.547975220324105	0.797149098360121
Merged-chr16-49856422-2	chr16	49856322	49856522	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	768.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	5.12430720553456	5.2032628314598	5.24631962167847	5.13095188674154	5.02118046832046	5.01730857584868	4.89518250499742	5.02233064959023	-0.350805859392978	0.244813385078098	0.555884768862855
Merged-chr10-128566180-4	chr10	128566085	128566285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011119)	promoter-TSS (NM_011119)	-251.0	NM_011119	18813.0	Mm.4742	NM_011119	ENSMUSG00000025364	Pa2g4	38kDa|AA672939|Ebp1|Plfap	proliferation-associated 2G4	protein-coding	8.8255935346912	8.99700736452753	9.07510730265722	8.87050598267436	8.65311907162731	8.78789951569534	8.97490063465174	8.69155381529782	-0.203442963125843	0.191451565143954	0.490854206495116
Merged-chr3-123266746-1	chr3	123266646	123266846	+	801.5	f1_balb.idr	promoter-TSS (NM_027135)	promoter-TSS (NM_027135)	-750.0	NM_027135	69608.0	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	2.88562315199597	2.37362338804438	2.5756593962487	2.45255325274665	2.5151161707286	2.8807340924661	2.69861109208035	2.76905326341772	0.683211135147072	0.329632156657872	0.640974929073915
Merged-chr3-135851796-4	chr3	135851699	135851899	+	888.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026228, intron 3 of 8)	Tigger20a|DNA|TcMar-Tigger	-11530.0	NR_040540	71038.0	Mm.410798	NR_040540	ENSMUSG00000106306	4933401H06Rik	-	RIKEN cDNA 4933401H06 gene	ncRNA	3.86868119163833	3.53632659355687	3.5520513707929	4.00812485512291	3.7987928255693	3.54130388348511	3.85252986110915	3.86691992397904	0.00623240592931975	0.989914577119521	0.99600840647023
Merged-chr10-13868945-4	chr10	13868857	13869057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347362)	promoter-TSS (NM_001347362)	0.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	6.83855812849653	7.00023676222744	6.5291520765614	6.50240265028066	6.77867016511204	6.3851595628274	6.63774917025777	6.41963156125249	-0.221027484673718	0.349965251029358	0.657468765915822
Merged-chr3-88245933-4	chr3	88245842	88246042	+	886.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021375, exon 5 of 10)	exon (NM_021375, exon 5 of 10)	8742.0	NM_021375	58176.0	Mm.103777	NM_021375	ENSMUSG00000104445	Rhbg	-	Rhesus blood group-associated B glycoprotein	protein-coding	4.27813405872517	4.10128548233197	4.32177992400025	4.11464852482615	4.23126255275254	4.26656706159542	3.96990573354837	4.61786817706529	0.223056179736747	0.58947524845721	0.820464677958613
Merged-chr18-61083248-4	chr18	61083156	61083356	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001146268, exon 23 of 23)	exon (NM_001146268, exon 23 of 23)	-22316.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	4.80140272744019	4.93395170856846	4.91434637276851	4.59816810751228	5.30824872484753	5.15659836180394	4.89073130625363	4.87478162759276	0.545138270107875	0.102877390042541	0.352197800815195
Merged-chr6-87807302-6	chr6	87807238	87807438	+	898.677795	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	2419.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	3.48253057656166	3.10302025794198	3.38276771464935	2.94099366744514	3.04614452712023	2.99069527589428	3.41875345038695	3.32754353576337	-0.114798168528936	0.848594254777186	0.942786711901439
Merged-chr4-55532962-4	chr4	55532851	55533051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010637)	promoter-TSS (NM_010637)	-476.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	7.91310759543164	7.84181857836275	8.24222981622457	7.98171494284818	7.97615188564439	8.2375768609469	8.32676790614493	8.14293899296355	0.220499113275241	0.21171568302602	0.516457404369891
Merged-chr8-22698215-4	chr8	22698096	22698296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159774, intron 2 of 21)	intron (NM_001159774, intron 2 of 21)	8387.0	NM_010546	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	6.60608676880776	6.82378789654073	6.59178666012263	6.62625613987471	6.33435976520374	6.52958047152999	6.52675119816815	6.20900017086341	-0.384010808771767	0.0757495529825175	0.297346133113253
Merged-chr2-22895434-4	chr2	22895328	22895528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019501)	promoter-TSS (NM_019501)	-94.0	NM_019501	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	7.66226820469572	7.43086807053952	7.62988597887112	7.1924799677305	7.71153435398669	7.60408583561279	7.85952227552777	7.88544410343133	0.383691372525583	0.0458157129097861	0.219559457968468
Merged-chr11-82078234-4	chr11	82078138	82078338	+	806.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20406.0	NM_011330	20292.0	Mm.4686	NM_011330	ENSMUSG00000020676	Ccl11	Scya11|eotaxin	chemokine (C-C motif) ligand 11	protein-coding	4.06036618499355	4.34846552597916	3.96317256076118	3.72731645223208	4.02259839454123	4.08640614513803	4.13313941995228	3.96086583710036	0.044648709127386	0.920187171834822	0.970412997665404
Merged-chr5-99382950-4	chr5	99382853	99383053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-130026.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.2457493828321	7.62127592370101	7.55233135672286	7.4676917874458	7.23642132730037	7.42436538276681	7.35747629419025	7.44715006133453	-0.156305454487941	0.394020374611998	0.693212127255608
Merged-chr17-5187670-4	chr17	5187564	5187764	+	880.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	192590.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	4.16995604433632	4.30617442962986	3.93237254874463	4.17471439075183	4.01614324149459	3.75967039551496	4.1082460315622	4.07809725474349	-0.411787009301487	0.335983110017641	0.646157677121549
Merged-chr1-92693177-4	chr1	92693039	92693239	+	909.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44298.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	4.67625453252001	4.40905023519864	5.19244866215434	5.2810189381692	4.39825482229893	4.59080364590234	5.08743952531914	4.54900265187196	-0.563842880843918	0.18452139401778	0.482036492266729
Merged-chr1-162589687-4	chr1	162589602	162589802	+	912.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356527, intron 6 of 7)	intron (NM_001356527, intron 6 of 7)	18874.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	4.92716951810289	4.67408007996016	4.48441952930316	5.51490101266146	4.59973495126059	4.46457556796308	4.90393089802277	5.05403843387796	-0.412265037385029	0.330410702689027	0.641806882938188
Merged-chr10-111770174-3	chr10	111770092	111770292	+	943.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	104184.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	4.04526915545636	3.54421700385049	3.83015934947326	3.83064310568716	3.62861120610679	3.56445516163536	3.4981800170224	3.62419017492858	-0.742572123108023	0.127244413350176	0.39689439517319
Merged-chr11-20232253-4	chr11	20232098	20232298	+	989.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172260, intron 5 of 6)	intron (NM_172260, intron 5 of 6)	17226.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	5.62909754052194	4.99949157549222	5.86985973495612	5.54789554909714	5.38980607042317	4.86307354796161	5.42180609382654	5.35931794483473	-0.461357804319033	0.173437181616452	0.467492905300771
Merged-chr3-95862031-4	chr3	95861931	95862131	+	949.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001355759)	TTS (NM_001355759)	-6146.0	NR_151629	70767.0	Mm.279872	NM_027541	ENSMUSG00000015748	Prpf3	3632413F13Rik	pre-mRNA processing factor 3	protein-coding	4.94179682798805	4.91655752375268	4.82346272684062	5.07759149613889	5.25847182466448	5.84257228174587	4.99206936943876	5.2421044846127	0.769066294493956	0.0235958551920119	0.142683661261763
Merged-chr13-12461506-4	chr13	12461425	12461625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_018886, exon 1 of 10)	5' UTR (NM_018886, exon 1 of 10)	213.0	NM_001291060	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	7.84983303256403	7.99468903675697	7.67960248170387	7.97631661458702	8.20988241060374	8.02110810968539	8.28326784329522	8.01672810902114	0.325876505874321	0.0568059222673921	0.24965354044645
Merged-chr15-78869984-4	chr15	78869887	78870087	+	844.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7203.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	3.96455645265335	4.25775560369047	3.74898558441493	3.9572881729695	4.04796967728136	4.39929728162769	3.79183711069298	4.14979589215816	0.308430966737695	0.495649288837218	0.765874409085869
Merged-chr10-84722266-4	chr10	84722176	84722376	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027423, intron 27 of 27)	intron (NM_027423, intron 27 of 27)	-33772.0	NM_001024918	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	5.37258865809924	5.15129156144371	5.4819206199582	5.48936034901877	4.96433890745611	5.30005368068725	5.1657270018673	5.34116196932781	-0.35736137413129	0.235678455301324	0.545646525172162
Merged-chr7-133079065-4	chr7	133078921	133079121	+	855.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	2839.0	NM_001347623	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	4.03273020874842	3.78745325221451	3.78586582901684	4.0114765463003	3.82860301052446	4.1091622647026	3.92333309262648	3.93762648174162	0.0877298159881571	0.841076215397583	0.939525416908854
Merged-chr8-68793902-4	chr8	68793791	68793991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293792)	promoter-TSS (NM_001293792)	-38.0	NM_001359129	70885.0	Mm.252421	NM_027590	ENSMUSG00000031864	Ints10	4921521J11Rik|AI462004	integrator complex subunit 10	protein-coding	7.94518170515883	7.87150283437999	7.49526257516184	7.94490310692571	8.16956246885014	8.42186094481788	8.28673636483252	8.3871036442854	0.619850119590376	0.000494377057630948	0.00764941215767558
Merged-chr8-83859762-3	chr8	83859666	83859866	+	824.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-40332.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	2.74029378876026	2.6763361376744	2.74052994025161	2.63947060486368	3.82220791112928	3.63573865205407	3.63264187403245	3.40787488660808	4.07859116518125	1.4116051962461e-07	5.868962982687e-06
Merged-chr3-90446600-4	chr3	90446527	90446727	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12991.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	5.25365173800594	4.82464070833795	4.78337506056326	4.67516149120919	4.70394999722869	4.75587902301617	5.09078255280716	4.5291959656183	-0.219012071392958	0.549806309332132	0.798147832027397
Merged-chr5-135013315-3	chr5	135013218	135013418	+	968.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_026688)	promoter-TSS (NR_026688)	-161.0	NR_026688	69812.0	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	4.50783733219345	4.16704176690244	4.06795028796957	4.3236302444504	4.25668835305499	4.67648432527964	4.15109662138251	4.11699519046105	0.089910848400582	0.828845478957593	0.934301785648316
Merged-chr16-27349503-4	chr16	27349410	27349610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198112, intron 4 of 4)	intron (NM_198112, intron 4 of 4)	20729.0	NM_198166	224065.0	Mm.326918	NM_198166	ENSMUSG00000056423	Uts2b	Gm538|U2B|Urp|Uts2d	urotensin 2B	protein-coding	6.35532255752152	6.6766715012109	6.02747640267626	6.05422040937909	6.81370029699976	6.3798566042161	6.34174615513695	6.387574015762	0.303211038965968	0.250447557627383	0.561574051926647
Merged-chr13-93771709-4	chr13	93771535	93771735	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009712)	promoter-TSS (NM_009712)	-44.0	NM_009712	11881.0	Mm.300178	NM_009712	ENSMUSG00000042082	Arsb	1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1	arylsulfatase B	protein-coding	4.39678410764015	5.13511801949212	5.29253775451591	5.19414315398258	4.61007746949054	4.67769995763057	4.77231463647154	4.7134267123782	-0.736818137530235	0.0493128423407736	0.229734419370164
Merged-chr5-135913403-4	chr5	135913292	135913492	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018871, intron 1 of 1)	MTD|LTR|ERVL-MaLR	21249.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	5.45698092732369	5.24715142785647	5.08079879805484	5.62929102158942	4.98783143861934	4.57499253884001	4.9143954412059	5.11066222518868	-0.881923563879746	0.00888309257451865	0.0724770342000989
Merged-chr6-87750455-4	chr6	87750410	87750610	+	982.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 3 of 7)	intron (NM_001159697, intron 3 of 7)	19641.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	4.96335417002028	5.06717240518085	5.50917573655545	5.80428576992811	5.80964908937102	4.84017786392543	5.19133546849393	5.53105660976707	0.0160680409206021	0.966759359302721	0.98827125057708
Merged-chr15-96715248-4	chr15	96715133	96715333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-15505.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	5.88664931114121	5.3343586229168	5.56696990341764	5.6906818467599	5.96704993874523	5.97127251321976	5.67124642482882	5.64453794074811	0.316393284526403	0.252235823878393	0.56356496866418
Merged-chr10-54112688-6	chr10	54112601	54112801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36779.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	3.98303662929044	3.78562065536072	4.38829333141355	4.68650697275112	4.08743527013793	3.93738212192285	4.4049877622745	3.92755080253309	-0.416780646215825	0.395980698239715	0.6950249619634
Merged-chr1-13293515-4	chr1	13293441	13293641	+	863.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	78888.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	3.17718618991278	3.26275062318873	3.87094486295437	3.60445638956932	3.55919977271066	3.48777909917321	3.47602161333277	3.59420931923992	0.0653073814713668	0.904565547503553	0.964559678221358
Merged-chr11-116096907-3	chr11	116096813	116097013	+	749.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9918.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	3.08566963833607	3.41527411811109	2.79704819399074	2.92024631010573	3.29993835451278	3.19848973188394	3.59716172230348	3.32221046767394	1.06852833195316	0.0785275739801319	0.303249263627235
Merged-chr15-82338942-4	chr15	82338834	82339034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008669)	promoter-TSS (NM_008669)	-108.0	NM_008669	17939.0	Mm.20325	NM_008669	ENSMUSG00000022453	Naga	-	N-acetyl galactosaminidase, alpha	protein-coding	8.01372316051813	8.03803991301088	7.57529517402903	7.56729711311185	8.00204591872259	7.92523194969149	7.79542858620114	7.74247257587111	0.0778398780533254	0.689947029545532	0.873656641328967
Merged-chr11-54149986-4	chr11	54149880	54150080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	49056.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	7.1307326887815	7.0545938114111	6.87931653162762	7.08705662834493	6.50731895148903	6.55775557330986	6.65866960378469	6.92663816668726	-0.530188182528518	0.0105579515106127	0.0821226566029832
Merged-chr14-66183331-4	chr14	66183233	66183433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 5 of 30)	RLTR49|LTR|ERVK	30491.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	6.33910415084299	6.37762885206282	6.44684000899631	6.53719125152773	6.58364765042515	6.3173593549113	6.39683751126713	6.50856941282046	0.0398379956182236	0.853725721919924	0.944903737664624
Merged-chr7-104401316-4	chr7	104401217	104401417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42671.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	6.22247541180979	6.57522903735302	6.10576860535656	6.23374935075697	5.84246455373818	5.75955424716779	6.26405409135829	5.87695795241457	-0.538971217119032	0.0368384064370495	0.191153310188456
Merged-chr11-107341589-4	chr11	107341501	107341701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	129119.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	5.56415381886529	5.28082065696636	5.36102033416066	5.84491437922969	5.78838930396271	5.79172834773676	5.58951415836564	5.44871688804839	0.190726992524312	0.519865819209235	0.78036882925248
Merged-chr16-87652671-3	chr16	87652568	87652768	+	878.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-46286.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	3.43785555967551	3.56500897325748	3.93434721992524	3.57358169983084	3.69647476129041	3.49075112682082	3.74212791086945	3.30998958353508	-0.193169613969675	0.70880064959868	0.88307290901394
Merged-chr10-121693330-5	chr10	121693206	121693406	+	591.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177335, exon 13 of 13)	3' UTR (NM_177335, exon 13 of 13)	-46624.0	NM_001359720	270802.0	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	2.97776833380842	2.81881038602517	2.66287818453258	2.86891704847508	2.66462600853837	2.96888591485869	2.85080769390881	2.8596327025827	-0.0124958591918016	0.984128932083888	0.994237242628259
Merged-chr4-25273456-4	chr4	25273351	25273551	+	872.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026194, intron 6 of 18)	L1MC4|LINE|L1	8370.0	NM_026194	67490.0	Mm.226295	NM_026194	ENSMUSG00000040359	Ufl1	1810074P20Rik|AI429228|Kiaa0776|Maxer|Rcad|mKIAA0776	UFM1 specific ligase 1	protein-coding	4.14769949035889	3.93978789460838	4.28160858003908	4.23980379685209	3.9715008673438	4.06926741729276	4.38136942082292	4.36040729196012	0.102114150189789	0.807333169128404	0.925729780371477
Merged-chr6-38866045-4	chr6	38865939	38866139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	10151.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	5.90214589653885	5.90264854777458	5.71198586097209	6.40781722098078	6.05579125691753	5.63546798022412	5.48974718579379	5.35414637050945	-0.56378411388498	0.0728606637224666	0.290406712005747
Merged-chr19-21896557-4	chr19	21896488	21896688	+	843.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	118248.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	3.76751912411119	3.4314216612182	3.86548331721369	3.97484610642822	3.97928704124987	3.72337801700214	3.75253481448194	3.48487377191865	-0.0836184832213217	0.868349123304739	0.950731730651165
Merged-chr1-152025464-4	chr1	152025355	152025555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 1 of 5)	MTD|LTR|ERVL-MaLR	64865.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	5.82432057328025	6.03408560783044	5.82534369943934	5.98186869279661	6.41456947475286	5.54635181154826	5.77145493517483	5.82120558837047	0.0436726929614601	0.881529559341594	0.955384724180766
Merged-chr2-118961727-4	chr2	118961629	118961829	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35232.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	5.53489636533271	5.78360729602913	5.76211325886755	5.80565839491659	7.29995778367721	7.18305126303996	7.22439681345949	7.27448199525911	2.18091677279223	9.3898627583248e-24	5.18109334321551e-21
Merged-chr10-77130697-4	chr10	77130578	77130778	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009929, intron 2 of 41)	intron (NM_009929, intron 2 of 41)	-16973.0	NM_001109991	12822.0	Mm.4352	NM_009929	ENSMUSG00000001435	Col18a1	-	collagen, type XVIII, alpha 1	protein-coding	3.61244365966082	3.59398049088552	4.18749898700299	4.12710547253898	3.90565565463875	4.00583781739106	3.53906354114298	3.78021943221313	-0.27190058764494	0.59134358948357	0.821549075923235
Merged-chr15-61989374-4	chr15	61989318	61989518	+	844.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010849, exon 3 of 3)	exon (NM_010849, exon 3 of 3)	4077.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	3.30996773307228	3.54334225429828	3.7821539294563	3.55793894454816	3.44389289793443	3.42320334322008	3.57874883213978	3.3704723095351	-0.33982074018145	0.5053513147503	0.771470037762552
Merged-chr2-131239718-5	chr2	131239597	131239797	+	941.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206382, intron 3 of 7)	PB1D10|SINE|Alu	5634.0	NM_144888	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	4.33633261052005	4.11545137533562	4.20831745556509	3.97173276755417	4.43100402744784	4.08369971251822	4.04829197060518	4.37430771456177	0.256210688764066	0.536151173507802	0.790213033830861
Merged-chr2-103084700-2	chr2	103084600	103084800	+	721.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355474, intron 2 of 5)	intron (NM_001355474, intron 2 of 5)	11025.0	NM_019735	56369.0	Mm.24772	NM_019735	ENSMUSG00000010911	Apip	APIP2|CGI-29|Mmrp19	APAF1 interacting protein	protein-coding	2.69687654030607	2.59823978346872	2.69724968084574	2.18938940576721	2.81640361928134	2.46142286706399	2.3515925552601	2.63448161006668	0.0890177623571742	0.90875273218265	0.966100563913989
Merged-chr11-43451493-4	chr11	43451386	43451586	+	882.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A|LTR|ERVK	17755.0	NM_198936	193116.0	Mm.28200	NM_148673	ENSMUSG00000020409	Slu7	AU018913|D11Ertd730e|D3Bwg0878e	SLU7 splicing factor homolog (S. cerevisiae)	protein-coding	4.06622947191015	4.25858840905208	4.16329051743014	4.47047188568951	4.03976528891009	4.13891378444649	4.19047538623594	4.25036355569653	-0.284747076748709	0.487792114443982	0.761057402147961
Merged-chr5-72168161-4	chr5	72168010	72168210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356611)	promoter-TSS (NM_001356611)	79.0	NM_001356611	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	6.6009190330676	6.50768741537607	6.57232183682578	6.10614961395663	6.37555080771612	6.42381560615629	6.09319008397297	6.0079031166453	-0.307942203926669	0.221014492867284	0.529067123644727
Merged-chr7-110179414-4	chr7	110179296	110179496	+	968.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42307.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	4.73577040409218	4.4253204224066	4.22631362963249	4.46941598604015	5.05081601024014	4.45617887105195	4.67843643260158	4.32387462975725	0.430785617674043	0.284504023028771	0.596324963525583
Merged-chr6-116672568-4	chr6	116672453	116672653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	intron (NM_178045, intron 1 of 10)	1283.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	6.74397411289327	7.50990588138505	6.63666172216161	5.8178849911953	7.1835524806738	7.30330772952792	6.95208718281139	6.45892095034695	0.26178066371326	0.615161646971957	0.834301983320473
Merged-chr7-67372296-3	chr7	67372189	67372389	+	969.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 1 of 11)	CpG	569.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	4.44122058864504	4.84624405447062	4.67367697015353	4.15845300726172	4.46777607565607	4.65612362251621	4.19286757125433	4.04768880175747	-0.42298311327479	0.327038406129951	0.63867061868755
Merged-chr2-164047412-2	chr2	164047312	164047512	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114079, intron 11 of 13)	intron (NM_001114079, intron 11 of 13)	22188.0	NM_001114079	381404.0	Mm.82301	NM_001114079	ENSMUSG00000054582	Pabpc1l	1810053B01Rik|Epab	poly(A) binding protein, cytoplasmic 1-like	protein-coding	3.19347605446717	3.17216356867187	3.13654795751919	2.84921474485644	3.07827932359406	3.12359595127339	3.23543388444288	3.07499252019407	0.178415366023212	0.756277307723113	0.904237426702
Merged-chr2-156539378-1	chr2	156539278	156539478	+	756.0	f0_c57.idr	intron (NM_001006664, intron 21 of 21)	intron (NM_001006664, intron 21 of 21)	-8198.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	2.48171100987045	2.42013715345924	2.39786311881098	2.08457363871251	3.27757470358782	2.95793465840636	3.16073016041422	3.01811882891492	5.75911404826753	1.56689406711101e-09	9.72362273782863e-08
Merged-chr4-12500760-4	chr4	12500661	12500861	+	859.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-328746.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	4.38321242467186	4.7554980624381	4.1468697484895	4.47512648327835	4.51234402908544	4.37424099391839	4.48668654938619	4.14450015797025	-0.164862214535939	0.680461696763279	0.868890858294556
Merged-chr17-65641916-3	chr17	65641814	65642014	+	865.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146002, intron 1 of 2)	intron (NM_001146002, intron 1 of 2)	290.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	3.74727798249195	3.74196519570917	3.8960465478845	3.86928677736396	3.96399537443149	3.69634221180837	3.7328849122487	3.69232282272613	-0.0949392548171586	0.834841258853137	0.937111320810386
Merged-chr10-128409922-4	chr10	128409831	128410031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358973)	promoter-TSS (NM_001358973)	-81.0	NM_027257	69917.0	Mm.46614	NM_027257	ENSMUSG00000025374	Nabp2	2610036N15Rik|Obfc2b|SSB1	nucleic acid binding protein 2	protein-coding	8.35718330307182	8.36900655304417	8.24058676381292	8.41505893910924	8.33478228989495	8.42999524532726	8.35638475709174	8.18101707010825	-0.028329266552053	0.853237997315667	0.944740256839571
Merged-chr11-99186310-4	chr11	99186228	99186428	+	894.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31251.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	4.11311034215503	4.34270111639625	4.20548467039236	3.57399233206052	4.62430772718764	4.19141228385902	3.94640661234259	3.96044910730053	0.338324143629634	0.490929119895151	0.762599708110011
Merged-chr4-143216464-3	chr4	143216364	143216564	+	887.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-3755.0	NM_001256380	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	3.48843262029536	3.16233605935509	3.07315632115248	3.54231514251687	3.43276595690444	3.31690830366004	3.47443446618582	3.3812684827257	0.209255508376812	0.704920318922508	0.881540521110812
Merged-chr13-112800733-4	chr13	112800609	112800809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008247)	promoter-TSS (NM_008247)	-68.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	7.93729600354789	7.79689138354155	7.97315596073011	8.14673068889182	7.97505425426698	7.64594703333014	8.12954701425447	7.66917631166395	-0.128485017447817	0.499335302109746	0.76829699895959
Merged-chr13-98890998-4	chr13	98890886	98891086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001048267)	promoter-TSS (NM_001048267)	56.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	5.46269031528683	6.31487013549947	6.01644771264893	5.93686514708969	5.62268852358329	5.84357986353555	5.69038047401421	5.71530910115033	-0.413886565838435	0.14605855577344	0.425990655250878
Merged-chr13-34107195-4	chr13	34107091	34107291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046184, intron 1 of 4)	L1MEf|LINE|L1	6081.0	NR_046184	432745.0	Mm.159104	NR_046184	ENSMUSG00000113591	4930447K03Rik	-	RIKEN cDNA 4930447K03 gene	ncRNA	5.50325585522143	5.61732151969271	5.83190864426879	5.79209676412692	5.43133397708368	5.360033111797	6.02357465814188	5.52877868127119	-0.145333590927868	0.620212864754569	0.837084318577183
Merged-chr13-114460806-3	chr13	114460721	114460921	+	649.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1870.0	NM_008046	14313.0	Mm.4913	NM_008046	ENSMUSG00000021765	Fst	AL033346|FS	follistatin	protein-coding	3.10977793523521	3.41337882377361	3.11010850209299	3.34848673715818	3.25894854788291	3.40923540829289	3.49444838715628	3.40560124903134	0.461223844206965	0.392165588663044	0.691774675781771
Merged-chr8-10006607-4	chr8	10006511	10006711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033622)	promoter-TSS (NM_033622)	-22.0	NM_033622	24099.0	Mm.28835	NM_033622	ENSMUSG00000031497	Tnfsf13b	BAFF|BLyS|D8Ertd387e|TALL-1|TALL1|THANK|TNFSF20|Tnlg7a|zTNF4	tumor necrosis factor (ligand) superfamily, member 13b	protein-coding	7.89191583263734	8.33165288259295	7.84749570591095	7.87138210221206	8.36858500287236	8.36912051053956	8.1408445546547	7.88041333759766	0.263292466187002	0.185447652417296	0.483393181883342
Merged-chr6-146675304-4	chr6	146675225	146675425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18107.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	8.37095349619825	8.58631014234097	8.7274123387494	8.75241443095638	8.84292478839133	8.79004267837847	8.79305538434236	9.00122478085303	0.296269493525988	0.0641641220846492	0.269169783494705
Merged-chr4-109420956-4	chr4	109420845	109421045	+	960.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145948, intron 2 of 17)	intron (NM_001145948, intron 2 of 17)	5298.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	4.5862150288228	4.24463611272397	4.54947993220662	4.62264350290854	4.57091966810849	4.27672589885577	4.32411968246026	4.14827473228741	-0.37705468506515	0.338154799770347	0.647796331490298
Merged-chr17-83312678-4	chr17	83312582	83312782	+	903.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38249.0	NM_001114361	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	4.41964027167442	4.50561877898033	4.78359103787074	4.45604451476603	4.22479928418492	4.41575027413168	4.01478535971798	4.37475526085088	-0.661653438753455	0.0925151983062338	0.332721363887815
Merged-chr7-139220501-4	chr7	139220399	139220599	+	965.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001143755, intron 4 of 8)	intron (NM_001143755, intron 4 of 8)	-7192.0	NM_001162540	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	4.32417174936431	4.56982194171015	4.37830212991205	4.53570846624503	5.03425359378498	4.84164514819842	5.53892094705643	5.40956122409347	1.53521655883125	2.41278796480288e-05	0.000600069303098197
Merged-chr2-150861273-4	chr2	150861180	150861380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	B2_Mm2|SINE|B2	-18710.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	6.5814793591679	6.14960820945476	6.52093732015789	6.69636047904713	6.18571009105881	6.02822152282388	6.53389782740423	6.23386615192579	-0.37450613255849	0.130482340938821	0.402128252667253
Merged-chr10-117375997-2	chr10	117375897	117376097	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013391, intron 1 of 9)	CpG	976.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	4.15239881000214	4.03290121387902	4.45307624810944	4.35076260839831	4.2419700940469	4.22866576875976	4.18226464663985	4.41146050087244	0.0145949002064284	0.970854995417167	0.989540146809868
Merged-chr9-119963436-4	chr9	119963322	119963522	+	947.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028735, intron 21 of 28)	intron (NM_028735, intron 21 of 28)	19601.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	3.9397265366926	4.56083615636238	4.33009315017632	4.23572236115746	4.36648385623647	3.94388495098992	4.26810757752074	4.36864965816525	-0.0795625312228101	0.851612102687694	0.944041393197436
Merged-chr17-80208498-3	chr17	80208418	80208618	+	852.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1213.0	NM_001195485	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	3.3828438506296	3.16124379488861	3.38329819422651	3.23286522780548	3.53759755282824	3.31677412753906	3.37015872904325	3.48764591833127	0.52427757908826	0.308444287741577	0.620793493346942
Merged-chr11-83271192-4	chr11	83271119	83271319	+	851.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15507.0	NM_001166028	237890.0	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding	3.76347097412284	3.91586876269167	3.81641141869057	3.49357675029522	3.7601778391807	3.64909031562534	3.89809937802217	4.24469193947182	0.458551608279751	0.340768604522808	0.649892443944284
Merged-chr13-94743673-4	chr13	94743556	94743756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-45287.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	6.49447103176369	6.34697647084944	6.16339310484069	6.60195425594807	6.22878491838137	6.03540500980481	6.77474794089362	6.44137511321852	-0.0338039390019262	0.895491775664385	0.96091250358065
Merged-chr15-81178053-1	chr15	81177953	81178153	+	849.0	f0_balb.idr	intron (NM_001082536, intron 1 of 13)	intron (NM_001082536, intron 1 of 13)	12704.0	NM_001082536	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	3.30006689018802	3.53417823471967	3.30048754324031	3.60827615173821	3.29361239115053	3.29028770482546	3.28832241348815	2.97494220834791	-0.84185570335358	0.135530481072342	0.409815417471255
Merged-chr16-24637581-4	chr16	24637421	24637621	+	988.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-84334.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	4.84544085083166	5.68589275445936	5.17291548766303	5.23428928087919	5.39484084217615	4.94283280221202	5.35237590637863	4.80123097198577	-0.214659161779742	0.551493234767016	0.798941768998782
Merged-chr11-93736830-4	chr11	93736732	93736932	+	972.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	148934.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	4.61821846129194	4.14122285260756	4.7090305685371	5.10514152058843	5.40553027136251	5.22774988011089	5.68433807015789	5.11404662021332	1.2644779913256	0.00176888951932694	0.0212610245012111
Merged-chr11-79125886-3	chr11	79125767	79125967	+	807.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	20606.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	3.07899826143926	2.86296760474414	3.334309734404	3.14583547207389	2.75453315603258	3.07120408917378	2.82227506042297	2.6084962416534	-1.30900749048417	0.0507600175474174	0.233569332483458
Merged-chr11-5960775-4	chr11	5960675	5960875	+	937.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019661, intron 2 of 6)	intron (NM_019661, intron 2 of 6)	5017.0	NM_019661	56418.0	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	4.50140026176375	4.19277608471156	4.80007907253913	4.69366090391414	4.3691649267912	4.35058297634696	4.60043468218989	4.79679210406908	-0.0705968262393989	0.857705613151879	0.946392149155271
Merged-chr9-106261306-3	chr9	106261200	106261400	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13346.0	NM_020559	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	3.97098177593581	4.65357364193171	3.97153283799124	3.45016296378467	5.29424829910832	5.34278046316454	5.32261676930505	5.3473260977704	2.66942887503037	2.29896161906314e-09	1.38162077191889e-07
Merged-chr8-6572438-2	chr8	6572338	6572538	+	788.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1467151.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	3.5155866805447	3.65442295515158	3.57778040415905	3.81578204126567	3.84959104994171	4.15588196002807	3.88089744558635	3.89551055946489	0.822959384388539	0.0786293535737066	0.303392089246239
Merged-chr8-120110432-4	chr8	120110305	120110505	+	972.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3747.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	4.60880865239204	4.6947557194883	4.91573509323237	4.46440351922384	4.87637924772859	5.15267886647658	4.92506750930903	4.80608267541366	0.571822639189663	0.0944061780260166	0.336138129443942
Merged-chr2-102940381-4	chr2	102940294	102940494	+	907.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-38729.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.15040617701483	3.67790189150994	3.81512810951568	4.30153017260719	4.18243128202734	4.09241840313869	3.80024572784625	3.75717773542839	-0.123959087782017	0.797803276882776	0.921862017583033
Merged-chr9-65193359-3	chr9	65193256	65193456	+	877.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21334.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	3.62311779694325	3.60461932443406	3.52152930139797	3.48933765998764	3.29821927346687	3.11837585207558	3.55875142850831	3.57153980590847	-0.539773454404234	0.306356008732717	0.618841398120897
Merged-chr10-40348735-4	chr10	40348632	40348832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168304)	promoter-TSS (NM_001168304)	-576.0	NM_001291817	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	8.00939767507671	7.77949874008697	7.92773726382791	8.02011337293364	8.1335614647147	8.19445065631712	7.8608760154257	7.94366931439272	0.131433281456243	0.441035662782416	0.728379224700288
Merged-chr13-23544403-4	chr13	23544294	23544494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178197)	promoter-TSS (NM_178197)	342.0	NM_013548	260423.0	Mm.221389	NM_013548	ENSMUSG00000100210	Hist1h3f	H3.2-221|Hist1	histone cluster 1, H3f	protein-coding	7.69470322115084	7.64305704423695	7.31642443991431	7.6061305823135	7.84603542534089	7.90559159351642	7.59994186634981	7.8801690068308	0.311443577302148	0.0838554605493445	0.31487380388488
Merged-chr3-51652440-4	chr3	51652335	51652535	+	905.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8744.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	3.68156333237172	4.28795219016467	3.79666500656852	3.85685223568951	4.12491021276515	3.73911760528292	4.02789512471852	4.04326724155464	0.185292701983517	0.690616996906739	0.874035324365541
Merged-chr4-139574475-4	chr4	139574374	139574574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205173)	promoter-TSS (NM_001205173)	-246.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	9.37491078199878	9.4278810183415	9.35975502907048	9.0953469734539	9.32683966239145	9.37471677777727	9.59440436424668	9.26492730282368	0.0968850359762112	0.53502418551555	0.789545441306942
Merged-chr4-155734518-4	chr4	155734389	155734589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101506)	promoter-TSS (NM_001101506)	-315.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	7.76335167254386	7.56935687917885	7.66828987043992	7.71334608742149	7.92012255532308	7.42337428303046	7.7191625933448	7.62061317177955	0.0154168859108378	0.933098736622057	0.975903066165441
Merged-chr14-75754168-4	chr14	75754083	75754283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177381, intron 1 of 22)	CpG	310.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	5.38974593007866	5.57170743993688	6.2989483168281	5.64201865654833	5.69938114609442	5.63237643846089	5.81863058477898	5.77470424664208	-0.0563244155261467	0.852955805729181	0.944678751070911
Merged-chr9-25253461-3	chr9	25253360	25253560	+	895.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359738, intron 1 of 12)	intron (NM_001359738, intron 1 of 12)	568.0	NM_001359738	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	3.94317430622395	4.15665304640878	3.83458520674742	4.1845330164082	4.25025020235787	4.30745750951176	3.87506460994552	4.13536463713682	0.26846789182681	0.534303887175311	0.789127617239728
Merged-chr9-44087935-6	chr9	44087829	44088029	+	917.305542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198091, intron 1 of 11)	intron (NM_198091, intron 1 of 11)	3009.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	4.53806141194451	5.0240665149087	5.00622675468447	5.09444273917123	4.36526280224072	4.37894873132222	4.71679534769737	4.29917977738663	-1.06820630785574	0.00459725076251904	0.0446361631462751
Merged-chr2-163583974-3	chr2	163583884	163584084	+	845.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18330.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	3.63644330790394	3.99219016982575	3.63694748133201	3.73980713187962	3.46919712575945	3.52036982408204	3.67356516701072	3.40431022813982	-0.774641590601703	0.117282216526284	0.37873291398804
Merged-chr4-53307367-4	chr4	53307268	53307468	+	837.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37136.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	4.5341736655034	4.410049596306	4.41154273831331	4.7751452192311	4.32767249765858	4.40260344141076	4.51386072814829	4.27249113680489	-0.410759846816373	0.280344832144678	0.592346638474506
Merged-chr9-7250816-4	chr9	7250738	7250938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21676.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	6.16934976151936	5.85906037584589	6.38304299881057	6.39210154934061	5.82957961054648	5.96824614891822	6.11945378867338	5.83711300086784	-0.445518738757478	0.0829473201388753	0.312910863142771
Merged-chr4-137175764-4	chr4	137175674	137175874	+	925.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-10708.0	NR_040443	100503595.0	Mm.421314	NR_040443	ENSMUSG00000085833	Gm13003	-	predicted gene 13003	ncRNA	4.17218787136505	4.19939019455699	3.58765168327563	3.91451001399349	4.51721552839514	4.20097870366893	4.65270691129972	4.46550736803352	1.18159107035062	0.00655991441224005	0.0579602964186736
Merged-chr3-96578346-4	chr3	96578248	96578448	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001293701, exon 7 of 7)	3' UTR (NM_001293701, exon 7 of 7)	-11547.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	4.60980153926873	4.70696774163819	3.87474007599635	3.46857701559038	4.85759233366674	4.33087767620213	4.13296313744641	4.0977950949845	0.278189102490267	0.612388363244313	0.832728843392243
Merged-chr12-16870975-4	chr12	16870854	16871054	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24024.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	5.72592919332196	5.67479227843805	5.77647289439105	5.82107840259903	6.00040318286589	6.06628223487226	5.94740463016859	5.23826454521886	0.166698427684063	0.563530734040763	0.806392065423334
Merged-chr5-53929672-4	chr5	53929553	53929753	+	976.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68870.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	5.12194383076721	4.64002884359392	4.99448328559003	5.1737920656993	4.91243252638823	5.09846286376792	4.9702590123399	4.73000482790507	-0.148412437683452	0.660874270501901	0.859137758662627
Merged-chr4-126440789-4	chr4	126440683	126440883	+	933.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153403, intron 16 of 18)	MIRb|SINE|MIR	-11241.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	4.24719610273545	4.15909002526499	4.29336151073056	4.51695889528727	4.61164246191943	4.27702533734802	4.36001418881324	4.19814367953148	0.134451980861324	0.737341291543111	0.896374281276027
Merged-chr8-35565299-3	chr8	35565208	35565408	+	878.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	-22490.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	4.0256278291214	3.96422399985571	4.57724584736781	4.87344106517402	3.99411425351499	3.9811015648792	4.15767121158436	4.17340283935979	-0.87081647634483	0.0659200677627223	0.27337010622715
Merged-chr4-89145586-4	chr4	89145455	89145655	+	952.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024433, intron 1 of 7)	intron (NM_024433, intron 1 of 7)	8185.0	NM_024433	66902.0	Mm.28500	NM_024433	ENSMUSG00000062937	Mtap	1300019I21Rik|MSAP	methylthioadenosine phosphorylase	protein-coding	4.4265550795165	3.90147097572759	4.15568380366167	4.57147064866769	4.33325079611379	4.17645094618633	4.5586777337779	4.61315386127963	0.298968973821436	0.487196793760282	0.760600900973846
Merged-chr19-55098761-4	chr19	55098611	55098811	+	791.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356285, intron 3 of 22)	intron (NM_001356285, intron 3 of 22)	766.0	NM_008149	14732.0	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT-1|GPAT1|P90	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	3.89500440263038	3.82794079718122	3.98886340218747	4.10492433141754	3.93931102089592	3.6184337727687	3.6719838178028	3.84401107903063	-0.523317464524438	0.254336181885845	0.565669587740499
Merged-chr10-128909765-4	chr10	128909659	128909859	+	911.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007653)	promoter-TSS (NM_007653)	-107.0	NM_007653	12512.0	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	5.50946764028889	5.22467452281224	5.74812431190771	5.3211543296269	4.56495730849628	4.92927788064341	4.63638488351949	4.65465154421308	-1.49166870273614	1.06487084031968e-05	0.000291482268968793
Merged-chr7-97148634-3	chr7	97148522	97148722	+	885.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	L1MB3|LINE|L1	66871.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	4.30998042177471	4.25353182108735	4.27151433233902	4.13481482480532	3.70703861122642	3.79428553809111	4.08303525993576	3.67218747122426	-1.15295411171147	0.00975217672116748	0.0775492808780341
Merged-chr17-45591872-3	chr17	45591778	45591978	+	812.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199113, intron 3 of 13)	intron (NM_001199113, intron 3 of 13)	515.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	3.14517451065567	3.15550152485882	3.3758769936704	3.51352950601702	3.26155749692972	3.2551178116057	3.30924774543247	3.20552246882899	-0.222193809669359	0.686063502854992	0.871760528240684
Merged-chr5-67327433-4	chr5	67327334	67327534	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178651, intron 4 of 17)	intron (NM_178651, intron 4 of 17)	20479.0	NM_001310629	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	5.15629397058306	5.67418994320464	5.78837074031779	5.688393594259	5.87958466209982	5.33786922492913	5.45553342817677	5.71461852930492	0.0360430866270776	0.905400884567756	0.964885884722431
Merged-chr5-5421632-3	chr5	5421527	5421727	+	748.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41376.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	3.366694136791	3.44254521327824	3.42635631028	2.71700674761008	3.68574623391652	3.42328886357614	3.29293994746704	3.97957407202023	1.146065583246	0.0674768051050481	0.277209483468326
Merged-chr10-24625179-4	chr10	24625057	24625257	+	880.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29715.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	3.87406934695783	3.90460714720414	4.4928480802909	4.11344660236719	3.85982479844545	4.04954650042062	3.69149554710691	3.8724131147178	-0.668526278031786	0.149143825461891	0.431184018629893
Merged-chr3-96245318-4	chr3	96245243	96245443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013549)	promoter-TSS (NM_013549)	-114.0	NM_178212	319192.0	Mm.5220	NM_178212	ENSMUSG00000063954	Hist2h2aa2	H2a-614|H2a-615	histone cluster 2, H2aa2	protein-coding	6.20696607534661	6.21314733716013	5.78088346308824	5.13754034159427	7.29002322121634	7.27508065179216	7.12381629352564	7.25257417305889	1.95767602542832	5.7863312723603e-12	5.46965834841081e-10
Merged-chr9-118040374-4	chr9	118040260	118040460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001048146)	promoter-TSS (NM_001048146)	-162.0	NM_001286507	27215.0	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	8.83508695742252	8.8105730851242	8.82454183912027	8.71683942429983	8.8228650057392	9.00654063178374	9.25951563699468	8.66182879166362	0.199599287924455	0.24694730973347	0.558168726560377
Merged-chr4-59416633-3	chr4	59416497	59416697	+	624.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 3 of 16)	intron (NM_001163288, intron 3 of 16)	22036.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	2.78944558648647	2.71192458864763	2.85542921363187	2.96156025990481	2.89776407244414	3.0866629983512	2.9075963425987	3.03296671283874	0.602598539886076	0.321670004681398	0.633233286881578
Merged-chr11-86840711-3	chr11	86840623	86840823	+	923.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33063.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	3.9682704233379	3.94513671996458	4.15698772231548	4.28813526258012	3.75145719303025	3.86933405246887	4.37388733861506	4.0161354794985	-0.226219180268212	0.619561805416072	0.836720209857499
Merged-chr8-125052254-4	chr8	125052163	125052363	+	687.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-int|LTR|ERVL	-1932.0	NM_174853	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	3.67495642117381	3.70325605302675	3.72559715541765	3.33059271628	3.93670539573108	3.37117505533706	3.55508242447756	3.62128595352252	0.121572044422626	0.815565825781793	0.928838606005649
Merged-chr1-86599996-4	chr1	86599916	86600116	+	851.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360887, intron 5 of 6)	intron (NM_001360887, intron 5 of 6)	17095.0	NM_001360887	26895.0	Mm.12973	NM_172974	ENSMUSG00000026240	Cops7b	D1Wsu66e|E130114M23	COP9 signalosome subunit 7B	protein-coding	4.18089779886348	4.20732903446458	4.31460084422918	4.66165097242113	3.884860683612	4.04716131681886	4.16337928562629	4.35322470942641	-0.636529952158399	0.139950039488226	0.415963916015219
Merged-chr1-88576379-4	chr1	88576271	88576471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24854.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	5.05587328243226	5.0948710569628	5.31293126005238	5.36796807295232	4.89794327324217	5.2671390466713	5.396519134644	5.33786380769854	0.00613866724813923	0.984453052087986	0.994315323522068
Merged-chr2-124684706-4	chr2	124684610	124684810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31129.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	8.59304944603283	8.69709562017561	8.91198771726098	8.62788746035528	8.52762648002439	8.61364957613563	8.79087396104078	8.41536577169272	-0.148309782667484	0.366598104358521	0.670971624328495
Merged-chr12-44936889-2	chr12	44936793	44936993	+	598.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_144552, intron 2 of 5)	intron (NM_144552, intron 2 of 5)	137590.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	2.96582887048421	2.75291421212053	3.21783574438748	2.84930838356261	3.28175647636353	3.49654428246962	3.20487742464674	3.32565928893567	1.49167088859704	0.0104669529854293	0.0816129858159993
Merged-chr17-56036725-4	chr17	56036629	56036829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252471)	promoter-TSS (NM_001252471)	-70.0	NM_001357649	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	8.15064997304585	8.44627997778462	8.11368641177266	7.98590161853953	8.45018497538965	8.71612486944825	8.3261681361274	8.15285894903505	0.310738376975132	0.103201224033713	0.352873128956895
Merged-chr16-77030615-4	chr16	77030510	77030710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	16541.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	7.69424999587567	7.68032373268701	7.90253962336317	7.63557107956962	7.42532801146166	7.57476958271223	7.50455365006838	7.27451783088167	-0.369263050466957	0.0372921901612346	0.192630053855964
Merged-chr5-113931068-4	chr5	113930978	113931178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22372.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	5.73806282907947	5.48883005966591	5.17736232099745	5.37822530448205	5.16536423120055	5.51883517162022	5.75394640336264	5.56549574051787	0.0909903196011444	0.765536418767189	0.908309649125696
Merged-chr4-55925143-3	chr4	55925035	55925235	+	956.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-392660.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.48362986161456	3.6291609055427	4.03205834305658	4.61450997450617	3.90821868183742	3.61341189380451	3.96497546348076	4.29574048473914	-0.726805743316261	0.171049242394339	0.464162889513089
Merged-chr2-122702469-3	chr2	122702383	122702583	+	832.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290993, exon 1 of 6)	5' UTR (NM_001290993, exon 1 of 6)	180.0	NM_011774	22785.0	Mm.27801	NM_011774	ENSMUSG00000005802	Slc30a4	Znt4|lm|znT-4	solute carrier family 30 (zinc transporter), member 4	protein-coding	3.09865579911972	3.2384518312202	3.51461456162281	2.9960207827317	3.13121574223314	2.93551673619511	3.02601310795587	3.15738947592485	-0.597235671941011	0.316990772549252	0.628905690750891
Merged-chr9-44196567-4	chr9	44196444	44196644	+	932.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	L1MB5|LINE|L1	37502.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	4.449468214841	4.80062863182634	4.35465649356759	4.91855217250238	4.6509411562246	4.71384008685838	4.75154592115876	4.77114820372072	0.0967695342970294	0.794107249286718	0.920358789920322
Merged-chr7-114190914-4	chr7	114190791	114190991	+	713.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63789.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	3.43693201306523	3.67047872635702	3.72670989884911	3.39766236503806	3.4296950199514	3.89964929885432	3.80975295823738	4.12223897115912	0.827028258354642	0.102113268538227	0.350811863834884
Merged-chr10-18237435-3	chr10	18237332	18237532	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2451.0	NM_144820	215814.0	Mm.296565	NM_144820	ENSMUSG00000059554	Ccdc28a	1700009P13Rik|AI480677	coiled-coil domain containing 28A	protein-coding	4.83032673545154	4.90038923840317	5.01250732167666	4.57976450915069	4.38672660249164	4.23410076366519	4.19707780754194	4.10329494187517	-1.34400148694845	0.000664046299041012	0.00967379277925506
Merged-chr3-9031111-2	chr3	9031010	9031210	+	888.0833130000001	f0_c57.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-26387.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	2.46647248562067	2.4085568777973	2.4666884928987	2.34182984731184	2.84368451966552	2.9907731903269	2.92183083089093	3.14047248754155	2.92121855116248	2.3055352329524e-05	0.000578244159077939
Merged-chr9-64703712-4	chr9	64703609	64703809	+	837.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 23 of 24)	MIRc|SINE|MIR	34047.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	4.27196402092714	4.15826214413024	4.10425656245347	4.1285596597275	4.02057231624476	3.73646337971029	3.9450424308719	3.90781306799572	-0.676770907578472	0.113351994742647	0.372273410870064
Merged-chr12-78748836-4	chr12	78748741	78748941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019579)	promoter-TSS (NM_019579)	-106.0	NM_019579	56217.0	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	8.88303854060417	9.08579269575363	8.80494874667925	8.887854230285	8.98818207797096	8.92390525776917	9.19116704513998	8.83976412802223	0.09034979821899	0.56254744890932	0.805707247859895
Merged-chr4-43045885-4	chr4	43045779	43045979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	341.0	NR_045567	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	7.31920943912712	7.12864938589909	7.1715530471973	7.25343515861348	7.26957831241326	7.08594431353231	7.15794258396611	7.07276889580239	-0.0903569793669543	0.62133354608752	0.837770420097813
Merged-chr6-98329591-3	chr6	98329491	98329691	+	631.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128092, intron 2 of 3)	intron (NM_001128092, intron 2 of 3)	13163.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	3.30920363881183	3.3886978311641	3.72943799804097	3.61953611408504	3.94712754277675	3.84954062595268	4.06571483424228	3.62032222421605	1.05736376233088	0.0331997027221603	0.178966115117447
Merged-chr15-25897746-4	chr15	25897649	25897849	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-35803.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	5.31378171262352	4.98491557323364	5.42812379080194	5.81167479714686	5.29126727859216	5.07796897074652	5.25847171070336	5.08451766365197	-0.456509369320757	0.171518734418345	0.464856718469459
Merged-chr12-17682609-6	chr12	17682636	17682836	+	993.595215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-8073.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	3.16448471342522	3.73688737577616	3.23105881491399	3.12610921071921	3.4327923411703	3.73922977655198	3.398714376503	3.35274041529132	0.507614273308029	0.366594554058094	0.670971624328495
Merged-chr1-131275348-4	chr1	131275272	131275472	+	901.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019777, intron 4 of 21)	intron (NM_019777, intron 4 of 21)	4191.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	4.81523738525871	4.76823016148401	4.23742613760784	4.23274955905644	4.70497363267706	4.51551048883913	4.5378929974793	4.70907443505859	0.200330076497237	0.609728733915476	0.831199401158713
Merged-chr10-120665906-4	chr10	120665790	120665990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99842.0	NR_038000	70874.0	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	4.9531188005413	4.93352840420086	5.40496302296632	5.40342646726957	5.41754714541737	5.13206306958025	5.45596703972139	5.16346116807457	0.180919797057759	0.572547891645933	0.811251013052168
Merged-chr7-13024374-4	chr7	13024213	13024413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011588, exon 1 of 17)	5' UTR (NM_011588, exon 1 of 17)	161.0	NM_011588	21849.0	Mm.15701	NM_011588	ENSMUSG00000005566	Trim28	AA408787|KAP-1|KRIP-1|MommeD9|Tif1b|Tif1beta	tripartite motif-containing 28	protein-coding	7.13351664230468	6.97284448609017	7.37124943561347	7.10517138674982	7.41987366064382	7.38080398803819	7.40112491315951	7.28524448968677	0.306494568008309	0.0988062088628804	0.34458256116654
Merged-chr10-51480209-1	chr10	51480109	51480309	+	1000.0	f0_balb.idr	promoter-TSS (NM_001291893)	promoter-TSS (NM_001291893)	-403.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	5.32871395969861	5.1789950598736	4.71162874403623	4.99369331034008	5.25879557676527	5.05363199999102	4.89182754438994	5.21234499285939	0.0931489143563085	0.777206443991404	0.913069887376198
Merged-chr12-70477743-4	chr12	70477631	70477831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	LTR16E2|LTR|ERVL	24577.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	6.05400372132402	6.55715714254231	6.29302950991453	6.32741043875233	6.78355312956991	6.75100639053926	6.92981320680793	6.52204682470542	0.62537624792481	0.00581145069677913	0.0530712716472386
Merged-chr19-26697282-4	chr19	26697187	26697387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 22 of 32)	intron (NM_011416, intron 22 of 32)	-50878.0	NM_001347439	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	7.41907524338434	7.30501018479422	7.41081551465887	7.67716780162511	7.00097338103318	7.04716363752128	7.49221956066996	7.02911367470881	-0.421164270559552	0.0429175047838098	0.210735725235017
Merged-chr10-127676898-4	chr10	127676777	127676977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113211)	promoter-TSS (NM_001113211)	-188.0	NM_173732	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	8.40693278134328	8.31270714699832	8.15663821786532	8.11466736381577	8.56282806545404	8.67616465189979	8.49208782348344	8.24281768908334	0.322521406738615	0.0581349499889789	0.253289319046675
Merged-chr9-121671558-4	chr9	121671464	121671664	+	879.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011703, exon 13 of 13)	3' UTR (NM_011703, exon 13 of 13)	28848.0	NM_011703	22354.0	Mm.282007	NM_011703	ENSMUSG00000032528	Vipr1	AV071699|VIP-R1|VPAC1	vasoactive intestinal peptide receptor 1	protein-coding	3.9350941391443	4.05459530015524	3.82039701086239	3.89121708731364	4.55281554765713	4.44557176203107	4.12192388268396	4.46862187465502	1.21526904076876	0.00274718639057167	0.0297991435681958
Merged-chr5-64883668-4	chr5	64883591	64883791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49008.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	5.22068806650427	5.50678327599555	5.04972322102266	4.72170173480374	5.75823815624165	5.54716127983482	4.91116628707444	5.52994390927933	0.593733820341896	0.0972853216838514	0.341756584351735
Merged-chr6-72535350-4	chr6	72535253	72535453	+	832.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9038.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	4.07074859887433	4.09258593989911	3.8242687542611	3.93700260222309	3.91590016133263	3.82907263291667	4.00822263715838	4.1960439420996	0.0264376695035596	0.951098010095033	0.982556219406068
Merged-chr12-3895431-4	chr12	3895335	3895535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 1 of 17)	intron (NM_153743, intron 1 of 17)	3691.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	5.84622727593745	5.69810195383733	6.10579598866587	6.6738492428065	5.31628645557482	5.73311425335916	5.76890615183707	6.04161170419872	-0.668647062292362	0.0430010901491055	0.210971505081553
Merged-chr10-127177937-4	chr10	127177861	127178061	+	982.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177615, exon 5 of 17)	exon (NM_177615, exon 5 of 17)	2684.0	NM_177615	216441.0	Mm.248373	NM_177615	ENSMUSG00000040441	Slc26a10	C78409|D630010I07	solute carrier family 26, member 10	protein-coding	5.19491604318272	5.13155110244162	4.82521535821545	4.8851142341517	4.86956019593029	5.39495025455442	4.87765841796069	4.65581402005312	-0.0779375347964221	0.824159563210713	0.932482704694281
Merged-chr2-92485846-4	chr2	92485757	92485957	+	907.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25339.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	4.04693088499749	4.00573069308972	3.78954426594724	3.89130283023071	4.22957074629001	3.96621179870184	4.07544724328908	4.13520629868907	0.473074512411993	0.257366826549155	0.569164026189719
Merged-chr6-17629249-4	chr6	17629144	17629344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7766.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	7.16793010611595	7.17042883966434	6.72020670432954	6.76926560001848	6.98485623126729	6.78549284543217	7.07827214899723	6.84698181430783	-0.0494044610029537	0.81949824277235	0.930894367972767
Merged-chr7-38019074-4	chr7	38018964	38019164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011274, intron 1 of 10)	CpG	488.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	6.02201553304427	5.98235552762375	6.28074352330122	5.89556628099804	6.01909292346052	6.08536268439798	6.15607383259221	6.48959935027878	0.238617205676083	0.340090987525064	0.649146882653898
Merged-chr2-60037203-4	chr2	60037189	60037389	+	628.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	88451.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	2.89735276960276	2.95172025337165	3.12122115956959	2.82378311958049	2.84528916706147	2.80543373196872	2.76102380802979	2.83382228285685	-0.609732132583721	0.3246778116415	0.636207624358716
Merged-chr7-19699773-4	chr7	19699682	19699882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009696)	promoter-TSS (NM_009696)	-594.0	NM_009696	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	6.86290652039923	6.8982443075154	6.70653192228181	6.9805846333876	6.83035476330045	7.05366568719654	6.81582087877051	6.60678335672168	-0.0565235071556088	0.784085979629042	0.91594470512568
Merged-chr13-104504262-1	chr13	104504162	104504362	+	611.0	f0_c57.idr	Intergenic	RMER6B|LTR|ERVK	216427.0	NM_001081020	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	2.98813633937222	3.00364403946126	2.7767490394968	2.7455834558721	3.29186148277325	3.16436982528047	3.3168516823009	3.32964768062393	1.65373940244393	0.00393829136724182	0.0395769647365389
Merged-chr18-84671978-3	chr18	84671883	84672083	+	917.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 7 of 11)	intron (NM_023149, intron 7 of 11)	10076.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	4.21512321918223	4.3754953791675	4.3063110051729	4.79319046108456	3.97325869590135	4.13830626337102	4.55812682122202	3.89723658755365	-0.706398333354608	0.116683546833471	0.378010707582057
Merged-chr11-114577077-2	chr11	114576977	114577177	+	888.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-91466.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	3.00562592571659	2.9581557618346	3.23676952334994	2.50670968131679	3.07764631382937	3.1810453386497	3.16933704594662	3.00446607942678	0.649890551297901	0.32389833460059	0.635387963170033
Merged-chr7-125552242-4	chr7	125552144	125552344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008700)	promoter-TSS (NM_001008700)	-38.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	7.24447468566018	7.35446051809573	7.17744248354473	7.06380523115619	7.57738705890127	7.65449850792991	7.5956878395501	7.31586015625862	0.44949609868285	0.0153836571469113	0.106766120520671
Merged-chr2-163756002-3	chr2	163755901	163756101	+	907.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5762.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	3.93325098037883	3.85107097196502	4.44169991340918	5.32485600183533	3.13121698577342	3.34062454142508	3.20241914463071	3.44424345301684	-4.21266606373174	1.36239887819243e-08	7.05780129191112e-07
Merged-chr1-36368808-4	chr1	36368713	36368913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172652, intron 1 of 20)	CpG	368.0	NM_172652	226976.0	Mm.24734	NM_172652	ENSMUSG00000010453	Kansl3	4632411B12Rik|4932435K23|AI431067|AI647574|C85723|Kiaa1310|mKIAA1310	KAT8 regulatory NSL complex subunit 3	protein-coding	5.62680224718494	5.63502537761657	6.16629227549118	5.5324300850805	5.63976342830409	5.74943553204382	5.81939024206104	5.67644173524157	-0.0511038126684181	0.856195804748689	0.945866020935807
Merged-chr4-34495195-4	chr4	34495088	34495288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55427.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	6.59463107376981	6.85879505036804	6.56275711712268	7.24636641333364	6.82671159322873	6.54247325726869	6.72903418403054	6.57468961751905	-0.266172093823521	0.275298843819013	0.58708236946753
Merged-chr4-63899341-4	chr4	63899249	63899449	+	863.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38065.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	4.68306068729964	4.44233005232002	5.15910243243342	5.24038157684448	4.29583771148742	4.30249741204653	4.66152738916782	4.37909423515552	-1.11859827110312	0.0060589736782469	0.0546602763024832
Merged-chr12-111166126-4	chr12	111166007	111166207	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286122)	promoter-TSS (NM_001286122)	-263.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	5.71218749633653	5.44224209399147	5.05426267388061	5.16918146389327	6.04401084029615	6.13090232608831	5.50047970245517	5.97367441942609	0.961741096567972	0.00151829481889729	0.0188605073148848
Merged-chr11-116028504-4	chr11	116028368	116028568	+	945.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1848.0	NM_001286006	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	4.62016766884727	4.93890214180598	4.30933706992374	4.11276364012661	4.72507154629737	4.75478636927357	4.74696492433596	4.61788196728223	0.406079869980763	0.309555453056284	0.621788726195435
Merged-chr19-41278721-3	chr19	41278619	41278819	+	934.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 16 of 16)	intron (NM_031376, intron 16 of 16)	-14715.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	3.21139382214688	3.25707064182696	3.75482950711741	3.50347636639648	2.98523719087867	3.05025294516612	3.31622241118453	3.21018568402795	-1.15022259366645	0.0501659867947694	0.232290188268598
Merged-chr16-38753688-4	chr16	38753579	38753779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152434, intron 2 of 6)	intron (NR_152434, intron 2 of 6)	11420.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	6.02528015681791	5.89842642108737	6.30074331380278	6.18947745304295	6.1554693218243	5.93790382077341	6.4004151622229	6.08606477545932	0.0669750652424733	0.7861645445203	0.916809851799109
Merged-chr2-5682176-4	chr2	5682060	5682260	+	862.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	MER21C|LTR|ERVL	-6114.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	3.62507146793186	3.54428626516354	3.87438037904285	3.81135895590307	3.62817285570287	3.62624243140732	3.71560872387156	3.7288175027393	-0.156894232385472	0.738396433188958	0.89672014039935
Merged-chr8-125725162-4	chr8	125725082	125725282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9021.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	8.04888124565607	7.89237146721317	7.99184051495164	7.83637522408376	7.6896303227325	7.96799642164956	7.73709774944147	7.60076955510429	-0.243305277643372	0.157701496066299	0.444363018325581
Merged-chr10-80741829-1	chr10	80741729	80741929	+	586.0	f0_c57.idr	intron (NM_007460, intron 1 of 30)	CpG	446.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	3.27775849137735	3.46082169076177	3.58988837250615	3.55977125477086	4.09186580516027	3.70757732741865	3.62962270959261	3.8392612490768	1.0771291807156	0.0299575342461883	0.167111859726445
Merged-chr15-93358513-3	chr15	93358434	93358634	+	863.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21599.0	NM_024189	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	3.60502600359804	3.68728434689007	3.60553530519775	3.17125097860268	3.43683329672861	3.66877216551366	3.69315856622843	3.847980356437	0.459115723816595	0.376916765231971	0.679530873900015
Merged-chr12-111820923-2	chr12	111820823	111821023	+	636.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026752, intron 1 of 6)	intron (NM_026752, intron 1 of 6)	6753.0	NM_026752	68520.0	Mm.390497	NM_026752	ENSMUSG00000021286	Zfyve21	1110013H04Rik|AW558780|C85416	zinc finger, FYVE domain containing 21	protein-coding	2.77629112027194	2.56869865930194	2.65857169016161	2.79175776089728	2.20645568426453	2.56203695680381	2.58633934837934	2.52745611947092	-1.26641868251484	0.0973982063454665	0.341999446507374
Merged-chr1-134494122-4	chr1	134493996	134494196	+	836.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145510)	promoter-TSS (NM_145510)	-564.0	NM_145510	98710.0	Mm.198119	NM_145510	ENSMUSG00000042229	Rabif	AI842864|AW549708|E130318E12Rik|MSS4|RASGFR3	RAB interacting factor	protein-coding	3.41336322014086	3.70148690603513	3.28773858351099	3.63217011577666	3.56754950911566	3.46540043053399	3.71576933943376	3.68201142604626	0.261511024202273	0.604978939901873	0.828669218960366
Merged-chr6-29540498-4	chr6	29540398	29540598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347079)	TTS (NM_001347079)	11216.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	6.2944167204645	6.29451479343614	6.38546494450899	6.49257575660046	6.0181229703587	6.05965201652106	6.64399570562737	6.29102509605007	-0.154178832079952	0.533989788565172	0.789042708189764
Merged-chr9-108578713-4	chr9	108578615	108578815	+	999.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031392)	promoter-TSS (NM_031392)	-45.0	NM_031392	83669.0	Mm.335454	NM_031392	ENSMUSG00000066357	Wdr6	mWDR6	WD repeat domain 6	protein-coding	5.59787052586913	5.46886146949785	5.4115738115157	5.66981706774209	5.42019012304255	5.33475047100537	5.46767600957241	5.04364633865116	-0.38387285518473	0.18210323740309	0.478767986184875
Merged-chr2-79696155-4	chr2	79696054	79696254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11626.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	7.98828687889153	7.67653452802946	7.55393112261073	7.67640042878067	7.65438740513778	7.5760529450185	7.82251329289989	7.42391656601497	-0.134543842281231	0.474427989863379	0.75165589989079
Merged-chr7-47051965-4	chr7	47051861	47052061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026436, intron 1 of 2)	intron (NM_026436, intron 1 of 2)	1321.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	7.66806454952802	7.77231007179901	7.95291650843383	7.99971373559463	7.96261209176857	7.86395316403376	7.90094338883092	7.69805654695053	0.00177291897569631	0.991880698001231	0.996882127784068
Merged-chr14-31402839-4	chr14	31402671	31402871	+	965.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	MTD|LTR|ERVL-MaLR	14906.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	5.14761356191995	4.670410376743	5.05593490437768	5.07466168177612	4.97603058861608	4.94559639285287	4.82466802269183	4.8814747845074	-0.179244814340246	0.584254868218768	0.8175571050965
Merged-chr13-110903426-4	chr13	110903326	110903526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131193)	promoter-TSS (NR_131193)	-73.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	6.79344018980662	6.64871654708539	7.1904739593571	7.37305986606631	7.19461737842153	6.89575933370239	7.2788889992797	7.3492955170926	0.198338677881146	0.40588727661661	0.702456276834042
Merged-chr1-86524962-2	chr1	86524862	86525062	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1595.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	4.69361641591066	4.7768705553274	4.80709670793477	4.42716542372772	4.93823327226515	4.97892637603467	4.4150359498019	4.83927919028089	0.301001304961097	0.407645609156771	0.703857141814714
Merged-chr2-80150263-4	chr2	80150158	80150358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20600.0	NM_001355140	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	4.62646818616797	4.86331316267753	5.74910185790986	5.61564733243901	5.05793401884548	5.40504742926503	5.51274583343264	5.53712484332196	0.145183530524702	0.712033132055698	0.884715833326134
Merged-chr16-36725276-4	chr16	36725187	36725387	+	787.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 7 of 7)	intron (NM_001285788, intron 7 of 7)	31309.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	3.53550176454541	3.70950381222012	3.42020154951717	3.44039071031196	3.86341333467907	3.47230966372735	3.81387780133677	3.29193735596067	0.350694367444919	0.501055472763126	0.769095113768232
Merged-chr4-117210555-4	chr4	117210430	117210630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27906.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	5.71431585686932	6.3484733501023	5.42656683239943	5.40645513093643	5.65722947293153	5.99052951865893	6.15316051391841	5.83432497306141	0.218166141749767	0.502591359667574	0.769776320401967
Merged-chr11-55106830-4	chr11	55106639	55106839	+	976.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010299, intron 2 of 3)	intron (NM_010299, intron 2 of 3)	8754.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	5.20340438226996	4.85373688541275	5.02081536239855	5.07528437566963	4.81574904162303	4.72947480804277	4.66222917688466	5.17192781327465	-0.365366106267418	0.276774298501242	0.588783096156196
Merged-chr17-87954831-1	chr17	87954731	87954931	+	699.0	f0_balb.idr	Intergenic	ERVB4_2-LTR_MM|LTR|ERVK	-20219.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	4.13459805394479	4.01911216675363	3.72388720977973	3.61156241433588	3.5432199067148	3.24076789367325	3.70864655852831	4.09291977379823	-0.597063833019509	0.282886690674998	0.595041976860567
Merged-chr13-45962100-2	chr13	45962000	45962200	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 1 of 6)	intron (NM_001199304, intron 1 of 6)	2891.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	2.79971425688067	3.18129952896883	2.66026399150482	2.41577980585995	2.77644448284833	2.97594923947113	3.02907095580343	2.8633965606124	0.513550693322991	0.463010206346191	0.744479160511329
Merged-chr11-117707025-4	chr11	117706920	117707120	+	967.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 3 of 21)	MTC|LTR|ERVL-MaLR	52731.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	4.93781943245715	5.11123456222958	4.75710851760895	4.8377727301799	4.67504437139263	4.67890730367299	5.04207874409934	4.75400067065909	-0.249232425032668	0.461809972716901	0.743501704400988
Merged-chr17-10842364-4	chr17	10842257	10842457	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	1998.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	5.47627004143891	5.0234179758748	5.16266340730781	4.85300381348214	5.95536989289014	5.65260681200025	5.72230843109429	5.7252090047266	1.13680834642826	0.000120823598505225	0.00237309683167865
Merged-chr2-119047016-7	chr2	119046888	119047088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029617)	promoter-TSS (NM_029617)	-131.0	NM_029617	76464.0	Mm.202518	NM_029617	ENSMUSG00000027326	Knl1	2310043D08Rik|5730505K17Rik|Casc5	kinetochore scaffold 1	protein-coding	4.5860507099283	5.01247635252933	5.05709367852516	4.85805346732736	5.58249878883214	5.65619335440857	5.10191064719363	5.92888308306146	1.28479162408334	0.000114211093309371	0.00226888959270658
Merged-chr6-106663923-1	chr6	106663823	106664023	+	558.0	f1_c57bl6.idr	intron (NM_001109749, intron 17 of 25)	intron (NM_001109749, intron 17 of 25)	85114.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	2.83696883508374	3.04067610663051	2.83724612053162	2.83710138085145	3.07493542673277	3.32639138799099	3.25151766695874	3.26366579392855	1.3767918838618	0.0165675172905908	0.112557983336143
Merged-chr1-143803747-4	chr1	143803628	143803828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019562, intron 10 of 10)	intron (NM_019562, intron 10 of 10)	26450.0	NM_019562	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	5.83921516921509	6.24208391558167	5.53635045536948	6.22969297431383	6.20995955709682	5.88904949620631	5.97108151117843	6.10124988486351	0.066641649363354	0.810544942557161	0.926837464115733
Merged-chr1-171839709-4	chr1	171839598	171839798	+	875.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252472)	promoter-TSS (NM_001252472)	1.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	4.22150918511355	4.13334374359995	4.17432711311129	3.99490436433702	4.42993677737703	4.44145018477881	4.2933360642062	4.65242861028636	0.820192019461144	0.0327462230302954	0.177388693719479
Merged-chr13-56168049-3	chr13	56167945	56168145	+	850.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10840.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	3.55059667266301	3.37438273424201	3.75559542492239	3.51096653003254	3.6155797925855	3.72269523713891	3.4813991678841	3.70525014407012	0.266411931476621	0.583328357677121	0.817051076495496
Merged-chr13-60178617-4	chr13	60178504	60178704	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1069.0	NM_008086	14451.0	Mm.22701	NM_008086	ENSMUSG00000052957	Gas1	AW554192|Gas-1	growth arrest specific 1	protein-coding	3.82818271736903	3.98999826331591	3.65339663043429	4.08978476899048	4.17437950750486	4.05588644145291	3.86673571031285	4.2820296578063	0.504879745270752	0.262769228150391	0.574595518453318
Merged-chr13-69509758-4	chr13	69509662	69509862	+	924.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198600, intron 5 of 12)	B2_Mm2|SINE|B2	24102.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	4.84787303460956	4.63481584417683	4.57031430355912	5.02296252962555	4.86182673196168	4.79018539045447	5.10928952579883	4.65317564030002	0.135817696007414	0.701855797270836	0.879887873504074
Merged-chr1-84957878-4	chr1	84957769	84957969	+	979.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-22786.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	4.76213232523562	5.0723334586805	4.8752966970723	4.74998468371963	4.50220192151333	4.81733918311199	5.16472569654047	4.94171092080441	0.00511388926873147	0.988510100243164	0.995465556823073
Merged-chr3-61393743-3	chr3	61393649	61393849	+	633.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29242.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	3.61465350741083	3.38545460644587	3.56348797312054	3.55635456228	3.57684349286361	3.44588761150953	3.49611658502636	3.6130832827885	0.0142443437569933	0.976664313071551	0.991669126988102
Merged-chr18-78014925-4	chr18	78014870	78015070	+	890.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 32 of 43)	intron (NM_001195633, intron 32 of 43)	42298.0	NM_001101038	620235.0	Mm.35607	NM_001101038	ENSMUSG00000091055	Siglec15	Cd33l3|EG620235|SIGLEC-I	sialic acid binding Ig-like lectin 15	protein-coding	3.75363833235408	4.16135934182091	4.00552824772196	3.87609509185905	3.44595905577676	3.92971723195685	3.84452390623046	4.04782231671127	-0.363313491498882	0.450601543178258	0.735357832948579
Merged-chr8-24938812-3	chr8	24938716	24938916	+	964.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153397, intron 1 of 21)	MTD|LTR|ERVL-MaLR	9988.0	NM_001293693	353188.0	Mm.269223	NM_153397	ENSMUSG00000037437	Adam32	-	a disintegrin and metallopeptidase domain 32	protein-coding	4.18919786888202	4.39818597906829	4.80218745303107	4.8476407986491	4.07528466489933	3.7797973506895	4.54762923131001	3.91676171361503	-1.14489701695604	0.0155826000103414	0.107737142898115
Merged-chr11-72697497-4	chr11	72697407	72697607	+	766.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009671, intron 1 of 24)	ORR1E|LTR|ERVL-MaLR	7505.0	NM_009671	11736.0	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	4.29816749782518	4.63012148408706	4.51204745522783	4.34221907660671	4.4165817333829	4.22434464847679	4.52934696466401	4.38566932105674	-0.119416039887887	0.752515946564565	0.902553434256667
Merged-chr1-170867020-4	chr1	170866909	170867109	+	853.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 1 of 15)	intron (NM_001081304, intron 1 of 15)	762.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	4.37969861762661	4.28378421744276	3.82335653002997	3.72282366597123	3.94023007569628	4.34777096092478	4.01941707273668	4.08263431116469	0.0720955453249364	0.876884330014242	0.953815057399122
Merged-chr1-150165040-4	chr1	150164949	150165149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110420)	promoter-TSS (NR_110420)	-101.0	NR_110420	102639566.0	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	7.49922578321262	8.02130077751742	8.13126364928923	7.67273784126082	8.05915900705741	7.57698485265359	8.00106740340761	7.43536519586118	-0.0680907592810155	0.764526743175623	0.907727256922396
Merged-chr6-83572503-4	chr6	83572386	83572586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024239)	promoter-TSS (NM_024239)	18.0	NM_001362078	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	7.01437164248286	6.67564619914443	6.21082385261826	6.5674989530894	6.88308427725244	6.60658546583778	6.62750559516241	6.62607471730202	0.0743750283955374	0.757954622142114	0.904926340425875
Merged-chr4-3629033-4	chr4	3628930	3629130	+	884.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27476.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	4.29308557312979	3.99701601062474	4.60803672158907	4.37152483988839	4.30686507769291	4.11745996749133	4.68317474618126	4.29109672532091	0.0819039707089975	0.845294534753056	0.941471757098182
Merged-chr14-26530533-3	chr14	26530425	26530625	+	625.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 1 of 22)	intron (NM_001310445, intron 1 of 22)	4099.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	3.51113493635359	3.33746160428588	3.39629993161526	3.61274003222224	3.60534999965702	3.51016996047526	3.49804057817935	3.80331008032252	0.424382921651199	0.395869376160071	0.694870790007204
Merged-chr7-30953575-4	chr7	30953488	30953688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011680, intron 7 of 9)	intron (NM_011680, intron 7 of 9)	3215.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	8.14302339885687	8.07591620858921	7.98485026397152	7.95772267372058	8.02099476492769	7.97949539134641	7.91215597810413	7.60092261861682	-0.19025743555747	0.27279219709308	0.584183037393596
Merged-chr12-84970916-4	chr12	84970790	84970990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178065)	promoter-TSS (NM_178065)	-4.0	NM_178065	68497.0	Mm.24446	NM_178065	ENSMUSG00000042350	Arel1	1110018G07Rik|AI649076|AW610792|Kiaa0317|mKIAA0317	apoptosis resistant E3 ubiquitin protein ligase 1	protein-coding	5.42364644808537	5.29847106261044	5.0681378586211	5.29653198484463	5.84822096867266	5.41859481083308	5.34002385905749	5.44872261916266	0.465854107504642	0.117269436594926	0.37872600850228
Merged-chr11-70680111-4	chr11	70680026	70680226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190379, intron 8 of 20)	intron (NM_001190379, intron 8 of 20)	7979.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	7.35528103379133	7.37641439143224	7.32611445741586	7.15238907076128	7.39994430892273	7.46135653699318	7.505227041689	6.94019794264226	0.0639811021328859	0.750888092466997	0.901891036911221
Merged-chr2-24949637-4	chr2	24949510	24949710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_147179)	promoter-TSS (NM_147179)	-167.0	NM_026021	67187.0	Mm.296106	NM_026021	ENSMUSG00000026974	Zmynd19	2700064H14Rik|AA536891|AU014915|mizip	zinc finger, MYND domain containing 19	protein-coding	7.73409654109084	7.60114199923692	8.0725828110947	7.47047785733398	7.99935329332578	7.77679957900475	7.72162537970551	7.87462213822197	0.158324162514876	0.421012048092151	0.713655443512669
Merged-chr7-100991153-4	chr7	100991056	100991256	+	963.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20842.0	NM_001302347	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	4.89873195821711	4.74959859051696	5.03834604359197	5.1281837025504	5.00544838598536	5.17745251074535	5.10790551424386	4.69884613781294	0.0704839932220612	0.831917571553543	0.935667305160871
Merged-chr3-79286271-4	chr3	79286196	79286396	+	821.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59080.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	3.72612912345528	3.4904635568657	3.72666404153749	3.4718917828822	3.75758916757009	3.79313513257119	3.76061925810579	3.77446780644713	0.535251900442212	0.247316691083971	0.558406177784804
Merged-chr2-118760025-3	chr2	118759925	118760125	+	783.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001982, intron 5 of 10)	intron (NM_001001982, intron 5 of 10)	2636.0	NM_001001982	214239.0	Mm.379342	NM_001001982	ENSMUSG00000045838	A430105I19Rik	Ccdc9b|Gm353	RIKEN cDNA A430105I19 gene	protein-coding	3.41584721111824	3.5695248565483	3.41628377450021	3.65243973588446	3.33728491041295	3.27396969084131	3.45922779996389	3.71971360522137	-0.231007018414689	0.65740531720818	0.857274165938024
Merged-chr1-39590390-4	chr1	39590291	39590491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13044.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	6.01376608706176	6.35591650527312	6.16449334153168	6.42248433643099	6.34503586113044	6.23603743008055	6.33614021157644	5.84106911148196	-0.0780167658786159	0.755364622804031	0.903681605194713
Merged-chr5-76430116-4	chr5	76429996	76430196	+	927.962524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53981.0	NR_033501	639545.0	Mm.478255	NR_033501	ENSMUSG00000091204	Gm7271	EG639545	predicted gene 7271	pseudo	4.61695515724683	4.71182674747715	5.06463676436063	5.56012849468008	5.01889054522072	4.79678471846652	4.87334176683881	4.56959365463379	-0.463997686232497	0.245985384822131	0.557185390346692
Merged-chr3-58376939-4	chr3	58376841	58377041	+	884.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37779.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	4.2685691933908	4.17349075783221	4.35642165709894	4.30150995324544	4.03769517008211	4.30216995675363	4.2941765891403	4.61823285587588	0.1083099605985	0.787647215097016	0.917636852222575
Merged-chr18-3282473-3	chr18	3282375	3282575	+	905.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110855)	promoter-TSS (NM_001110855)	-728.0	NM_001110855	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	3.60983273574095	3.18235892365461	3.28944583695157	3.61695135654708	3.42623694073044	3.57520736842488	3.39234852719921	3.02052634442912	-0.256344823351953	0.655773071278862	0.85629437016692
Merged-chr19-45675981-4	chr19	45675874	45676074	+	991.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15781.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	4.84205499742403	5.02453764890599	5.05715591247112	5.44655258145802	4.97258915063768	4.62199968973583	4.89490213777594	5.2367208938668	-0.345130782587426	0.329953237434571	0.641318955991244
Merged-chr3-58507996-1	chr3	58507896	58508096	+	577.0	f1_balb.idr	Intergenic	Intergenic	-17825.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	2.43227346942059	2.29365996339315	2.37476927536656	2.45499402913794	2.1339110665523	2.04851980666771	2.03166574541774	2.24821442264232	-1.97632603160655	0.022502282052591	0.138580663670527
Merged-chr11-61494416-4	chr11	61494306	61494506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291035)	promoter-TSS (NM_001291035)	-140.0	NM_001291034	23939.0	Mm.38172	NM_011841	ENSMUSG00000001034	Mapk7	BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7|b2b2346Clo	mitogen-activated protein kinase 7	protein-coding	8.60406147269386	8.74221377762515	8.47678972355736	8.25572365426607	8.65336750916797	8.77887904098212	8.44257206652765	8.24047250312267	0.0225888804907331	0.904922985427145	0.964695555007872
Merged-chr1-167269471-3	chr1	167269354	167269554	+	907.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030724, intron 1 of 6)	intron (NM_030724, intron 1 of 6)	15673.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	3.75491953185902	3.52096703370528	3.65883982657433	3.85501088908657	3.31398501189208	3.49121689996708	3.54013104224776	3.60537672515493	-0.745967732682924	0.136667718330631	0.411151599640715
Merged-chr10-13470469-4	chr10	13470377	13470577	+	924.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	3919.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	4.86675345508838	4.73573324327309	4.56980993408314	5.22299105815845	4.42835999393686	4.19397858131444	4.54886032938713	4.68669609117061	-0.889978044859231	0.0227729739158888	0.139423790678086
Merged-chr17-65764607-2	chr17	65764507	65764707	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	Lx5|LINE|L1	8145.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	2.44087669049054	2.24543981038379	2.82126081458758	2.39085436182356	2.60624801426536	2.68754096104843	2.63500879949343	2.70491825539724	0.877560839447443	0.227080626415844	0.535725428645169
Merged-chr1-171825659-3	chr1	171825589	171825789	+	829.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14008.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	3.91095080455022	3.40116998382148	3.82622068046727	3.8509050086342	3.28130382639439	3.3978449979795	3.51456383999478	3.28219168201161	-1.3234897046378	0.012847902316674	0.094309033164428
Merged-chr17-26499173-3	chr17	26499034	26499234	+	795.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	9338.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	3.52624974498664	3.34117968457175	3.36833353672816	3.04639130587658	3.36319099492233	3.42526044853423	3.1120382567826	3.52463414591626	0.153189235370251	0.782623266990974	0.91529005173258
Merged-chr15-4024923-4	chr15	4024824	4025024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028266, intron 1 of 1)	intron (NR_028266, intron 1 of 1)	-1504.0	NM_024188	67041.0	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	6.74475876487678	6.46793567269597	6.42199748850867	6.59981774097887	6.9425105019931	6.84865212013031	6.79410937583094	6.66768585450854	0.36532246335212	0.0784419756926575	0.303150254524252
Merged-chr17-8838446-4	chr17	8838339	8838539	+	929.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	-11546.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	4.72965556347351	5.00200100674559	4.69385775442325	4.73124122986217	4.57162339212789	4.48650121968004	4.59574789112302	3.96626379642323	-0.79201181956965	0.0442920824691871	0.214686151724499
Merged-chr7-67759856-4	chr7	67759747	67759947	+	932.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201639)	promoter-TSS (NM_201639)	-105.0	NM_207663	233335.0	Mm.60526	NM_183312	ENSMUSG00000030554	Synm	4930412K21Rik|AI852401|Dmn|E130104F11|Syn|Synemin	synemin, intermediate filament protein	protein-coding	4.86699473163878	4.68759148337332	5.44008695826881	5.50138831066639	5.33519400574292	4.44199932180063	4.76688975556318	4.86455259644095	-0.524158625714569	0.207189535854679	0.511175781726586
Merged-chr10-52294300-3	chr10	52294215	52294415	+	695.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025705, intron 5 of 10)	intron (NM_025705, intron 5 of 10)	60696.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	3.43490150519514	3.34657915104412	3.71206789089631	3.26990750476592	3.16861021776876	3.12274082039649	3.07198604807457	3.14607352357228	-1.19400616804942	0.036469289651175	0.189949331778207
Merged-chr17-46555518-3	chr17	46555428	46555628	+	897.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020493, exon 1 of 7)	exon (NM_020493, exon 1 of 7)	634.0	NM_020493	20807.0	Mm.45044	NM_020493	ENSMUSG00000015605	Srf	AW049942|AW240594	serum response factor	protein-coding	3.87095699085035	3.77766967381253	4.16740962867833	3.95701341433197	3.93264009653264	4.24849618561101	4.0582343672418	4.47497912614811	0.622997590073174	0.154793910726856	0.440177211123282
Merged-chr2-79321837-4	chr2	79321739	79321939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010576, intron 24 of 27)	intron (NM_010576, intron 24 of 27)	66413.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	6.0311683274254	5.67889338451604	6.62969524343773	6.85101730351932	6.15482967523783	6.34154709752346	6.44335384208044	6.50410529239884	-0.0426760456040585	0.891304021445984	0.959325726463795
Merged-chr1-136344502-1	chr1	136344402	136344602	+	806.5	f0_balb.idr	intron (NM_001347109, intron 1 of 17)	intron (NM_001347109, intron 1 of 17)	1602.0	NM_001347109	67886.0	Mm.144143	NM_001081360	ENSMUSG00000041570	Camsap2	1600013L13Rik|4930541M15Rik|Camsap1l1|mKIAA1078	calmodulin regulated spectrin-associated protein family, member 2	protein-coding	3.46907333007681	3.24436614946651	3.30732805570199	3.60708121310918	3.26912425597481	3.35982697837028	3.04517868479242	3.36191837530245	-0.574579041300894	0.298352276734225	0.61047388226355
Merged-chr10-94039007-3	chr10	94038902	94039102	+	821.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 1 of 20)	intron (NM_053072, intron 1 of 20)	3001.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	3.56173652043161	3.70188886056305	3.35192421972513	3.46494281064572	4.02388143272658	4.34963366734176	4.4150594997951	4.13519639026658	1.99310749919809	1.74377771154224e-05	0.000452168866046867
Merged-chr3-152427871-4	chr3	152427751	152427951	+	889.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001287139, exon 4 of 14)	exon (NM_001287139, exon 4 of 14)	31167.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	3.82607258047786	3.96298422234142	3.98740066272349	4.6458607455431	4.24371051015309	3.94759100395989	4.15614485488663	3.82454686324217	-0.283371864521186	0.566625535017838	0.807951645949796
Merged-chr17-94749996-4	chr17	94749898	94750098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024720)	promoter-TSS (NR_024720)	21.0	NM_001357136	76781.0	Mm.139146	NM_176917	ENSMUSG00000055660	Mettl4	2410198H06Rik|A730091E08Rik|AV296509|HsT661	methyltransferase like 4	protein-coding	8.97248875072276	8.98541369311445	9.05106843335233	9.01452396212979	9.09489443149745	8.89958858627753	9.33518875293352	8.8467334911781	0.0671738838045577	0.678316333744172	0.868034533256964
Merged-chr2-102829355-3	chr2	102829230	102829430	+	812.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039151, intron 5 of 8)	MERVL-int|LTR|ERVL	72335.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.09278599658346	3.70553339325628	3.64230248816523	2.99780864006362	3.91172650896322	4.08587463270782	3.98721728394155	4.04773517973939	0.959327177839698	0.0857066025119287	0.318830890571578
Merged-chr19-16086756-4	chr19	16086647	16086847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-46084.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	6.24835023194573	6.32717795519488	5.91260040391302	5.6177124177115	6.50068032667369	6.32904444918888	6.12192814777173	5.97868774982622	0.323426662735673	0.250574635068043	0.561752817307346
Merged-chr10-77605487-4	chr10	77605385	77605585	+	971.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_125904)	promoter-TSS (NR_125904)	-612.0	NM_001301672	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	3.92502745454216	4.82748701234802	4.16237212254964	4.42228907455564	4.70551744187005	4.71281891934665	4.83853473835456	4.65346711989983	0.748680326690702	0.0741468901839618	0.293368621256488
Merged-chr6-87742277-4	chr6	87742164	87742364	+	866.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 2 of 7)	MTD|LTR|ERVL-MaLR	11395.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	3.56493530334051	3.57586450545314	3.5092971806185	3.83011516058736	3.80070092824909	3.29781715504255	3.43850680717803	3.85589991261672	-0.030213928430047	0.954285118568885	0.98373809489276
Merged-chr13-56631524-4	chr13	56631441	56631641	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 10 of 16)	intron (NR_155548, intron 10 of 16)	21955.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	4.96590006441641	5.12892902061793	4.68499419032521	5.08877294554307	5.70524690471378	5.17825557562344	5.2961554768396	5.3739884634682	0.799783887440589	0.0136048074997145	0.0980634524579422
Merged-chr2-29889172-3	chr2	29889072	29889272	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177661)	promoter-TSS (NM_001177661)	158.0	NM_001355137	18286.0	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	4.61799019858455	4.6874961502645	4.177400361571	4.12046304480813	4.77021560591997	4.45613733952515	4.10715413069234	4.78956402756945	0.327987896894931	0.443878718399837	0.730381508552915
Merged-chr2-91280154-3	chr2	91280037	91280237	+	879.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 7 of 8)	intron (NM_175123, intron 7 of 8)	15022.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	4.10774943643074	4.78338903850351	4.10837451283136	3.44091203002432	4.37765192973619	4.66644881810067	4.09028589770447	3.94662724365754	0.217630415521451	0.685669592002104	0.871538346919012
Merged-chr12-51865971-4	chr12	51865874	51866074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36438.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	8.23794280914567	8.08370669356229	8.3046396447412	8.58077225499876	7.60888131939793	7.76400652159291	7.70733125250969	7.66271162856033	-0.823864427820945	4.43200306515059e-06	0.000133276529858198
Merged-chr11-105592086-4	chr11	105591965	105592165	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181071, intron 1 of 25)	intron (NM_181071, intron 1 of 25)	2079.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	5.6283451946932	5.34141944804646	5.12546210986494	5.08002891408573	5.58821034936831	5.5913758949548	5.52563170146095	5.62533088696166	0.504123037020265	0.0826378786859343	0.312228970061368
Merged-chr5-125330272-3	chr5	125330166	125330366	+	754.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	10828.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	3.68454363683723	3.66406453330665	3.73350069496328	3.38292488083716	3.38522944916241	3.58693337544184	3.33751005090539	3.68287821982642	-0.364811161494491	0.475487286612575	0.75230527193466
Merged-chr6-87851131-4	chr6	87851086	87851286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013493)	promoter-TSS (NM_013493)	-80.0	NM_001355195	12785.0	Mm.290251	NM_013493	ENSMUSG00000030057	Cnbp	AA408710|Cnbp1|Znf9	cellular nucleic acid binding protein	protein-coding	7.88928184267668	7.73985182449068	7.67547110410256	7.65000546240339	7.54939238927343	7.66311986108078	7.96006812016733	7.77476431917936	0.00540055715479903	0.975991190774364	0.991438232740523
Merged-chr17-42910628-4	chr17	42910523	42910723	+	958.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-34199.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	5.12007179218023	5.16200612536555	4.83187344205291	4.69286417699156	6.34833630432151	6.15759624951586	5.74853373178952	5.50132532433527	1.78715805645344	3.30881325949653e-08	1.57853900132509e-06
Merged-chr10-53893237-4	chr10	53893134	53893334	+	978.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-142325.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	5.19956726400797	5.13142519815816	4.54030936831117	5.36723266012752	4.7714990399312	5.05084660696956	5.05526467836803	4.33218565156442	-0.534497477825177	0.175811809742425	0.470658653309832
Merged-chr9-120493287-4	chr9	120493148	120493348	+	983.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026892, intron 1 of 3)	intron (NM_026892, intron 1 of 3)	642.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	4.56177447599594	4.9687359598183	4.94550442877781	4.51038939426882	4.6708839395526	4.90401487348965	4.92131688289288	4.90864328336043	0.201428866575705	0.567901021248047	0.808351591137394
Merged-chr19-47510808-4	chr19	47510705	47510905	+	866.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175360, intron 7 of 9)	intron (NM_175360, intron 7 of 9)	-2177.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	3.14128761486695	3.08231232778462	3.30834246843568	2.85691378097503	2.90341505665858	3.12867536462601	3.18690770707937	3.30635073456215	0.149803949849341	0.800444869761329	0.923040237917604
Merged-chr1-152555578-1	chr1	152555478	152555678	+	652.0	f0_balb.idr	intron (NM_016846, intron 5 of 17)	intron (NM_016846, intron 5 of 17)	69639.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	3.50039558621613	3.31872836599467	3.22891552916248	3.29098047336338	3.34127931887392	3.40056528208144	3.09232194450928	3.28642486143683	-0.178114207878316	0.739415520579807	0.897284218525646
Merged-chr4-9246556-3	chr4	9246471	9246671	+	755.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12A|LTR|ERVK	-22722.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	3.98313582318082	3.83003812430289	4.4125189594498	4.60394801224314	3.79392723465155	3.75706486395949	4.196836167125	3.98138270381902	-0.820711019559736	0.0905670431690869	0.328704618172112
Merged-chr3-144698157-4	chr3	144698060	144698260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019464, intron 5 of 8)	intron (NM_019464, intron 5 of 8)	22175.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	6.96311519402947	7.2467927314987	7.29730453637144	7.29651389351663	7.50637129215627	7.20827274555287	7.49722506290549	7.26050379785324	0.224646864029965	0.243427091079214	0.554524091960604
Merged-chr12-35824705-4	chr12	35824625	35824825	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100896.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	4.39431897493225	4.3590995081975	3.90147204493327	4.36664750886514	4.26137922874501	3.7152221837242	3.98989141645415	3.84361701864504	-0.756566700370598	0.102910969907455	0.352236003416174
Merged-chr11-97187155-4	chr11	97187060	97187260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008379, intron 2 of 21)	CpG	732.0	NM_008379	16211.0	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	7.92391246271217	7.95240607033236	8.11698725911788	8.02270082988076	7.85752661008601	7.95082860680655	8.16675985868504	7.79237914210074	-0.0755743355257071	0.655736226248846	0.85629437016692
Merged-chr12-3861890-4	chr12	3861787	3861987	+	951.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045884, exon 2 of 4)	non-coding (NR_045884, exon 2 of 4)	357.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	4.82476452586757	4.6824935565938	5.09693466957668	5.07001755699166	5.29300071529146	4.66293483231646	4.91047425444858	4.70376495846616	-0.00138210588672502	0.996953993715668	0.99882031808529
Merged-chr11-106657093-4	chr11	106656994	106657194	+	960.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001032378, intron 13 of 13)	intron (NM_001032378, intron 13 of 13)	-44164.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	5.16442144925966	4.84643365728195	4.65830517955917	4.94990511598833	4.77533159846503	4.56394036409824	4.71670820604221	4.8476179002852	-0.380990187967412	0.266501542982678	0.578164752957072
Merged-chr8-110266148-4	chr8	110266090	110266290	+	856.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172916)	promoter-TSS (NM_172916)	-787.0	NM_172916	244653.0	Mm.444803	NM_172916	ENSMUSG00000059854	Hydin	1700034M11Rik|4930545D19Rik|4932703P14|672398|A830061H17|AC069308.21gm4|Gm9558|hy-3|hy3|hyrh	HYDIN, axonemal central pair apparatus protein	protein-coding	3.77842189303417	3.73513613807381	4.03327772186631	3.37258190840229	4.21802032225811	3.95710219576282	3.96861739578576	4.31831211698646	1.08990656028136	0.0211645363482387	0.132908798037346
Merged-chr18-39636271-4	chr18	39636178	39636378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137219.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	6.07478930415962	6.50615922390589	5.97004841746474	5.96943535931575	5.97255327065164	5.90537772067398	5.77576462018807	5.64079432471134	-0.49288311857233	0.0660756371402165	0.273775992549245
Merged-chr4-32982850-3	chr4	32982786	32982986	+	906.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027491)	promoter-TSS (NM_027491)	-112.0	NM_027491	52187.0	Mm.300814	NM_027491	ENSMUSG00000028278	Rragd	5730543C08Rik|AI467523|C030003H22Rik|D4Ertd174e	Ras-related GTP binding D	protein-coding	4.36763297635868	4.17370750745569	4.03912053993665	4.05523005675777	3.787831055464	3.95714415002422	3.8207029816007	3.83365646969112	-0.861162398260827	0.0482017371707902	0.226565610297702
Merged-chr14-31195351-4	chr14	31195235	31195435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 3 of 13)	intron (NM_001347583, intron 3 of 13)	11491.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	6.34994639055651	6.52553162850095	6.15911237745309	5.79218911924957	5.74822427804981	5.80693317785175	5.7080791593678	5.4059060390678	-0.871560281499972	0.00254803825523026	0.028134388079669
Merged-chr11-106759220-4	chr11	106759098	106759298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073165, intron 4 of 9)	intron (NR_073165, intron 4 of 9)	7972.0	NM_001033435	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	5.67500999954269	5.86853031373015	5.38765568479971	5.43484807512383	5.84039165979256	6.04067105179744	5.67264999248781	5.84071998955146	0.419400841478215	0.124141593573021	0.390992275271539
Merged-chr16-19963185-4	chr16	19963097	19963297	+	864.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183390, intron 2 of 6)	Lx8|LINE|L1	19852.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	4.25737245844358	4.04288654851057	4.21203825109213	4.78156308581374	4.08162887460162	4.01962941629595	4.23916317817332	4.57290938720293	-0.308468386525881	0.498266454724366	0.76759838054097
Merged-chr17-6656034-4	chr17	6655975	6656175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199948)	promoter-TSS (NM_001199948)	-136.0	NM_001166627	100040531.0	Mm.457987	NM_001166627	ENSMUSG00000095677	Dynlt1f	100040631|Dynlt1e	dynein light chain Tctex-type 1F	protein-coding	5.78940433181251	5.4313048702184	5.35009551187515	5.22610532135586	5.58477428367844	5.67049360750541	5.54835255650143	5.31506799834939	0.149191722822797	0.611788754977796	0.832569290540731
Merged-chr3-130878995-4	chr3	130878896	130879096	+	945.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148598.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	5.02970842053803	4.67363277479534	4.72701784787876	5.46821909806896	5.13610868809289	4.90593034879216	5.30298306330747	4.95776988652818	0.0914380755815616	0.806039214439814	0.925322678935546
Merged-chr11-69424083-4	chr11	69423978	69424178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 77 of 85)	intron (NM_001081330, intron 77 of 85)	-10403.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	7.27078364260479	7.492761303478	7.50002044443639	7.61727974799067	7.37008977911945	7.3239301109691	7.44478397475225	7.09242161944233	-0.224744960637704	0.232352232874105	0.541946192758711
Merged-chr9-70841985-4	chr9	70841884	70842084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	92824.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	5.14538574099384	5.22374953583928	5.08060399920318	4.86884932255423	5.13530151232503	4.9579573780066	5.18289475861936	5.40169190825429	0.201478544784471	0.520839922722763	0.781040425978248
Merged-chr14-56888117-4	chr14	56888017	56888217	+	956.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177627, intron 2 of 2)	intron (NM_177627, intron 2 of 2)	1274.0	NM_001360643	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	5.48902443158371	5.42992924677665	5.35572341110306	5.2498636731733	5.05701815681076	4.88922570828966	5.11484177640871	5.37997760196444	-0.468332869060089	0.123442218517	0.389611406353962
Merged-chr18-54979325-1	chr18	54979225	54979425	+	723.5	f0_balb.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	10855.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.37313948770177	3.35567480572425	3.4300504994618	3.3464310541627	3.44875456719586	3.59879052533285	3.24261113412757	3.58342871360177	0.344608165213411	0.496702805012112	0.766632889345732
Merged-chr7-74668385-4	chr7	74668295	74668495	+	894.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113615.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	4.10722950150174	4.03487953662818	3.94503778090571	4.0276759214674	4.33601601634607	4.70780164320776	4.27827591338592	4.70612573978802	1.17100891129619	0.00337531612593843	0.0350272089995876
Merged-chr11-73186277-4	chr11	73186188	73186388	+	771.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357891, intron 10 of 11)	intron (NM_001357891, intron 10 of 11)	9205.0	NM_029564	76281.0	Mm.371656	NM_029564	ENSMUSG00000040158	Tax1bp3	1300011C24Rik|TIP-1	Tax1 (human T cell leukemia virus type I) binding protein 3	protein-coding	2.96780040447065	2.81693521266871	3.20723807002402	2.73722219572699	3.06957980239473	3.26501587001896	3.13876794872812	3.20535829593867	0.970169848281864	0.102160823593577	0.350866357663075
Merged-chr6-73711002-4	chr6	73710911	73711111	+	920.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-239990.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	5.61408067446098	5.19418493185353	5.37970146138612	5.66555369231815	4.53487545935177	4.5037607351933	4.646747906079	4.52338639972886	-1.8649503582626	4.71166441940834e-08	2.172095606924e-06
Merged-chr5-72723596-4	chr5	72723484	72723684	+	951.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289494, intron 5 of 13)	intron (NM_001289494, intron 5 of 13)	13018.0	NM_013698	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	4.55983960380148	4.90515347839184	5.11236428246851	4.9109364044525	4.70819017553549	4.78383126933696	5.08695059179987	4.95024005316431	-0.00569859393104867	0.986734751970048	0.995165394900193
Merged-chr3-130761147-4	chr3	130760991	130761191	+	867.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30693.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	3.19547444337913	3.41270365459522	3.13413443509297	3.47798902614677	3.08838195218943	3.24385263021181	3.24277722354429	3.30935042228823	-0.389943656510828	0.481494709598235	0.756657499581416
Merged-chr14-20179238-3	chr14	20179131	20179331	+	570.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021542, intron 1 of 4)	intron (NM_021542, intron 1 of 4)	2551.0	NM_021542	16529.0	Mm.68998	NM_021542	ENSMUSG00000023243	Kcnk5	KCNK5b|TASK-2	potassium channel, subfamily K, member 5	protein-coding	3.53448030444858	4.06244110574358	3.79599934549985	3.64154413072162	3.50786835736609	3.46340177269782	3.57757724280703	3.58958779455389	-0.747834130947199	0.134669086097808	0.408506749599654
Merged-chr17-70985710-4	chr17	70985601	70985801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	4815.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	5.30814883673803	5.27734012517945	5.36955434346223	5.25118785278268	5.48686526980134	5.38893804453611	5.62988027405959	5.47867478548334	0.359634788342848	0.188470248890274	0.487043415835056
Merged-chr2-114654774-4	chr2	114654696	114654896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025675, intron 1 of 8)	CpG	168.0	NM_001356438	66632.0	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	7.43090847905877	7.65814457302551	8.26578908815383	7.92096278394417	7.16281412793171	7.54842032276855	7.57245412219879	7.60461700865903	-0.498196855162685	0.0286007339184332	0.162355182995467
Merged-chr5-16541954-4	chr5	16541840	16542040	+	998.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11555.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	5.43248167802962	6.09803589024975	6.37474244998115	6.16526604890809	5.44411435603551	5.78854600207594	5.49736576022255	5.26102357091482	-0.915924197989657	0.0031182941519785	0.0329459788397919
Merged-chr4-59368318-4	chr4	59368202	59368402	+	927.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 9 of 16)	intron (NM_001163288, intron 9 of 16)	70331.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	4.96959839929094	4.80809963746676	5.27035074691967	5.23520521382973	4.76215776251367	4.9639816757696	4.55667296285244	4.70498867317244	-0.679636142512384	0.0475786338847963	0.224963437045697
Merged-chr18-75599237-4	chr18	75599200	75599400	+	660.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 6 of 11)	intron (NM_201354, intron 6 of 11)	84655.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	3.00303860703469	2.96576184224722	3.06630320999751	2.83255829182331	3.42379931912922	3.11323499348091	3.17111775622921	3.18195336880397	1.10873866600128	0.0496655063446687	0.230755758970747
Merged-chr10-69211807-4	chr10	69211719	69211919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081347)	promoter-TSS (NM_001081347)	-838.0	NM_001081347	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	6.72406338437099	6.62295147854828	6.91313333870901	6.9033843881404	6.20430529183142	6.16001674051663	7.01866716236745	6.77703998618676	-0.299002381194324	0.259188983656925	0.57102902607161
Merged-chr14-103719431-4	chr14	103719331	103719531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19999.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	6.73330291113483	6.1586586605371	6.46571468043105	6.49230239296532	6.07507065933522	6.09023996842561	6.46530594034181	6.67480435519574	-0.190871128673188	0.460509373790297	0.742687499720882
Merged-chr15-77933970-4	chr15	77933859	77934059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4965.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	5.54430700936785	5.98776115068506	5.54526900744187	5.70581686596775	5.38306078471553	6.01749459147915	5.54505519809568	5.59637929104628	-0.110970806266502	0.704662140916763	0.88134153098426
Merged-chr17-35314743-2	chr17	35314643	35314843	+	999.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-5804.0	NM_010390	15006.0	Mm.466882	NM_010390	ENSMUSG00000079507	H2-Q1	H-2Q1|Q1|Q1b|Q1d|Q1k|Qa-1|Qa1|Qed-1	histocompatibility 2, Q region locus 1	protein-coding	3.11947561328931	3.3994047310614	3.33493203427365	3.08649520571785	2.96089016101152	2.8181320536014	2.85392842278383	3.11823869914595	-1.23143757073752	0.0462055168366755	0.220743840722043
Merged-chr5-24685750-4	chr5	24685646	24685846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016736)	promoter-TSS (NM_016736)	-69.0	NM_016736	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	9.18647915606376	9.26990566803562	9.32956766207503	9.05231627807979	9.1707911206749	9.42715765931362	9.24376389978649	8.98632119309396	0.00586659414517874	0.97054642219277	0.989436241028349
Merged-chr8-46828922-3	chr8	46828822	46829022	+	956.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	89177.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	3.70946790084122	3.37363385854969	3.75994220272545	3.8620344714515	3.48781680589781	3.47621758996508	3.83711676983461	3.80567187915055	-0.109112786704668	0.829504128444692	0.934573663797877
Merged-chr4-53227926-4	chr4	53227794	53227994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18302.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	8.00874237343594	8.01744346635855	7.9556263504438	7.87032760521372	7.84967041695661	7.98560714064234	7.94488419506725	7.98458391166812	-0.0270744990915539	0.863962009351317	0.948894455369976
Merged-chr17-50189613-6	chr17	50189600	50189800	+	851.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	797.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	3.57747496611206	4.06942952595743	3.74749941971203	3.54953563871576	4.1116654491242	3.81231584887766	3.78371805533009	3.69134693603853	0.345592706885771	0.477101206809624	0.753320087442721
Merged-chr8-72033089-3	chr8	72032978	72033178	+	807.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-23452.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	2.58885658763485	2.52730039250136	2.58908296360029	2.18573207156635	3.6546781293569	3.1637483367062	3.55385453531725	3.57031284377393	7.42088439054002	1.40817238633779e-13	1.78032508502909e-11
Merged-chr14-25483462-4	chr14	25483369	25483569	+	899.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	24284.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	4.31902618844897	4.30719733713874	4.14583154466726	4.41795295637245	4.25780016276337	3.69062411965307	4.17316463689384	4.04678418859429	-0.600873261092937	0.166969998877049	0.458465668815219
Merged-chr5-74470983-4	chr5	74470896	74471096	+	805.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 3 of 8)	L1M2|LINE|L1	60746.0	NM_178672	212986.0	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	4.12045257564935	4.31204612248935	4.26433718743915	4.09553163744036	4.2806047207869	4.08464192981958	4.45133894990183	4.68045215834922	0.47355454373496	0.238908388313889	0.549336483130711
Merged-chr6-6005899-3	chr6	6005803	6006003	+	891.0888669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010063, intron 14 of 16)	CpG	-28510.0	NR_040255	72249.0	Mm.443268	NR_040255	ENSMUSG00000085416	1700019G24Rik	-	RIKEN cDNA 1700019G24 gene	ncRNA	3.93152199026221	4.00385164678622	4.2634263624939	3.99459669997756	3.49534316612593	3.78978924890507	3.65635048771592	3.60919415773589	-1.24769226276692	0.00799137818057403	0.0671480939849962
Merged-chr11-121229151-4	chr11	121229052	121229252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001254735)	promoter-TSS (NM_001254735)	157.0	NM_144832	217370.0	Mm.27182	NM_144832	ENSMUSG00000039294	BC017643	-	cDNA sequence BC017643	protein-coding	5.70345985823721	5.46495595009004	6.15049329038037	5.6704889823859	5.84401929130114	5.85406931403695	5.7256588074245	5.89065840274785	0.111052109034513	0.686293744027426	0.871787672169905
Merged-chr5-74068500-4	chr5	74068466	74068666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177561)	promoter-TSS (NM_177561)	-155.0	NM_177561	69727.0	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	6.10832890376654	6.17266638073594	6.58322894549807	6.15035272519369	5.80992269064091	5.96161453532369	6.26761292179348	5.90500271787745	-0.416123894405953	0.105790746616977	0.358285176450006
Merged-chr3-153571645-11	chr3	153571535	153571735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	153498.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	4.4719404533352	4.61918993932301	4.979012916568	5.01166276275664	4.94585351570777	5.08302196331778	5.48439264336172	5.33790347022102	0.80826670221081	0.0236638649977653	0.143009869814564
Merged-chr15-53346192-4	chr15	53346108	53346308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010162)	promoter-TSS (NM_010162)	-25.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	7.69195780362159	7.90216182228401	7.62558388013922	7.82273572678643	7.68844079023913	7.52205638906214	7.93415239563862	7.48275982535807	-0.128085125508536	0.489987987204197	0.761990704265616
Merged-chr3-65523576-4	chr3	65523480	65523680	+	812.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4867.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	3.89817503243063	4.26937491749437	3.65722856930775	3.77490277560584	4.55112315468758	4.276675362795	4.30049586819737	4.10096807598689	1.0349863796485	0.0198691725087596	0.127549407467622
Merged-chr17-31118852-3	chr17	31118694	31118894	+	934.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009593)	TTS (NM_009593)	10817.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	2.94725374345558	2.82969612476228	2.83200584103853	2.41996325410784	2.53014454437589	2.51515664283272	2.62841521385734	3.05178963305915	-0.332016061702995	0.647839873588276	0.85185825899816
Merged-chr3-146158546-4	chr3	146158459	146158659	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	B4|SINE|B4	8385.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	4.04025141407027	4.36978755181954	4.09446015838017	4.22600787396598	4.46883130596159	4.46338971018273	4.12856779159076	4.83030118352132	0.709996523538971	0.083219287901159	0.313527004367575
Merged-chr16-91618998-4	chr16	91618914	91619114	+	941.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138664)	promoter-TSS (NM_138664)	-15.0	NM_138664	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	4.87417411838202	5.18151399885951	4.83879226577229	4.83304529537834	4.90213534149102	4.63823749037339	4.81583973571937	4.79838746348973	-0.280320346046952	0.402619593364651	0.700086968024978
Merged-chr6-148946485-4	chr6	148946374	148946574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019643)	promoter-TSS (NM_019643)	-4.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	7.97004638999688	8.06326606187703	8.14700093766923	7.7053376558614	8.11583341712753	8.20360862306628	8.16167065173264	8.03396835468873	0.202473928633037	0.244463761821106	0.555701660737218
Merged-chr10-84146293-3	chr10	84146209	84146409	+	636.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-45612.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	3.09036095616889	3.03434441675043	3.20151644364474	3.42780103793093	2.97071560328453	3.01132478919431	2.75714085803956	2.90314502299303	-1.23748219385227	0.0476065661212248	0.225035713238322
Merged-chr5-137331101-4	chr5	137330987	137331187	+	921.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359611, intron 4 of 14)	intron (NM_001359611, intron 4 of 14)	2495.0	NM_031406	83704.0	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding	4.08882467204277	3.79547794759426	3.55347447638609	3.93251185433923	4.14540485587783	4.21409682183286	3.72398283433347	4.0868813928715	0.531288617942219	0.25219126566586	0.563542923002808
Merged-chr16-38197450-3	chr16	38197338	38197538	+	666.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 7 of 11)	intron (NM_001347232, intron 7 of 11)	97386.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	2.99219747726888	3.32039812164203	2.70641450795886	3.02622362054954	2.99165342522159	3.22719093338256	3.1038929836141	3.27882900277793	0.476963095416986	0.443487173408423	0.729973488022342
Merged-chr1-89555566-4	chr1	89555469	89555669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	100758.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	7.24736826917715	7.56350419137005	7.21572623120315	6.91416570984126	7.29404411706984	7.65226974422889	7.29577527849068	6.91112601266953	0.0855064194191688	0.715905376378548	0.886371813543908
Merged-chr17-36273825-2	chr17	36273725	36273925	+	758.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-1821.0	NM_024468	79263.0	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	2.89302755144749	2.90009878617184	3.06675767381593	2.69321478626027	2.73140863886571	2.93824557773149	2.94249352215662	2.82869519748162	-0.120307800195608	0.846836231885094	0.942018787399771
Merged-chr6-121109753-2	chr6	121109680	121109880	+	826.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270475, intron 1 of 31)	CpG	21242.0	NM_001270475	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	3.11963635839532	3.0775329156077	3.41142442769129	2.86038867344685	3.3315410641499	3.29743501563558	3.54263705094723	3.35617388590829	0.990710545137201	0.0798657099086111	0.306060157509693
Merged-chr1-24481804-4	chr1	24481705	24481905	+	860.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 11 of 50)	intron (NM_007733, intron 11 of 50)	105632.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	3.98697893662018	3.69154129603917	3.88213000391204	4.17938578945502	4.36060546916029	4.20972366340438	4.35638521531452	3.93366638592363	0.687164754695352	0.124810111606909	0.392172737029896
Merged-chr10-54117971-4	chr10	54117878	54118078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42056.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	8.32629265081359	8.1825840619061	8.23820341792437	8.39288271219304	8.35055379346917	8.0710024365927	8.20516909470095	7.98354391878948	-0.158949885677896	0.339764715765511	0.64890693883585
Merged-chr12-112629548-4	chr12	112629441	112629641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 2 of 12)	intron (NM_007421, intron 2 of 12)	9494.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	8.69434749332162	8.88695144189619	8.8891444668418	8.85601921640279	8.66656183167337	8.77829511877948	8.65624223643269	8.70750231489506	-0.167364798504067	0.242990355610973	0.553962286914146
Merged-chr4-136129547-4	chr4	136129446	136129646	+	924.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-14276.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	4.45588666981061	4.35177916832712	4.50051356193706	4.72994321206593	4.57774970724725	4.54154092960693	4.910792573698	4.8031456361056	0.391028221437272	0.288651997348366	0.600671262074532
Merged-chr13-67173173-4	chr13	67173080	67173280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013769)	promoter-TSS (NM_001013769)	-2.0	NM_001013769	380855.0	Mm.284988	NM_001013769	ENSMUSG00000058900	Rsl1	rslcan-9	regulator of sex limited protein 1	protein-coding	6.83614893661073	6.76381041920381	6.85166132306038	6.38250616194211	7.49518060617866	7.25010214185554	7.63125093662568	7.09155723882504	0.938712364015199	2.37351283768606e-05	0.000593007397338309
Merged-chr10-67210145-4	chr10	67210073	67210273	+	799.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 3 of 25)	MTC|LTR|ERVL-MaLR	24423.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	3.1910981260894	3.38825484513214	3.25404025812189	3.12587014256977	3.50210344448758	3.36705316901736	3.24246623357432	3.66605600320612	0.771878387797318	0.144050052201955	0.422730928290371
Merged-chr9-89704507-3	chr9	89704419	89704619	+	905.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025360, intron 1 of 2)	intron (NM_025360, intron 1 of 2)	524.0	NM_025360	66111.0	Mm.27606	NM_025360	ENSMUSG00000032353	Tmed3	1200002G13Rik|AW546672|P24b	transmembrane p24 trafficking protein 3	protein-coding	3.75944397512836	3.78459667133166	3.80981415216822	3.60774932094459	3.68220062845073	3.65541563036597	3.63995780455899	3.94610111659382	0.00518650000420683	0.991067089801521	0.996611677733106
Merged-chr7-114086290-4	chr7	114086208	114086408	+	891.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	31473.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	4.17138704545929	4.47243943234263	4.49216539959361	4.5301252894421	4.78888232704794	4.53777985978902	4.34523095381101	4.26922130623452	0.184538155604477	0.638226123451253	0.847061371191777
Merged-chr2-160356386-4	chr2	160356297	160356497	+	871.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	10668.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	4.31356024292068	4.6701634303782	4.31426941762617	3.86472723584145	3.86234252068517	4.17275963471868	3.69648667879442	3.82949461357837	-1.09683614246428	0.0227836240806717	0.13944244010646
Merged-chr13-66905271-4	chr13	66905079	66905279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177750)	promoter-TSS (NM_001177750)	171.0	NM_026219	67530.0	Mm.379136	NM_026219	ENSMUSG00000021520	Uqcrb	2210415M14Rik|QP-C|QPC|UQBC|UQBP|UQPC	ubiquinol-cytochrome c reductase binding protein	protein-coding	6.01515271091914	6.08427516388676	6.81425072588306	6.22075781207533	6.0721623037381	6.32231399411526	6.00789622976022	6.22106824582464	-0.244287936440757	0.36969806412444	0.673890202215512
Merged-chr9-120709443-3	chr9	120709358	120709558	+	863.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	132127.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	4.09578056665415	3.96911720766567	4.20618395875059	4.15416642283371	2.83933418890136	3.07534484938246	3.03224298340567	3.11966863883424	-6.18168565921448	7.21487280804883e-09	3.95036485849313e-07
Merged-chr2-23039154-4	chr2	23039022	23039222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	1119.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	5.93820354454442	6.82341621964282	6.01223973187216	5.55323251840248	6.83309533846907	6.75206115433343	6.58698174919516	6.24464586590449	0.671277283757861	0.0384516629861936	0.196727908616456
Merged-chr2-127079281-4	chr2	127079171	127079371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 1 of 7)	RLTR28|LTR|ERVL	8614.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	5.50636183134871	5.6443856539258	5.16007423381447	5.14647031096686	5.63013787884696	5.50667706739759	5.65842178458629	5.86154779321691	0.514304301233924	0.0778264225070987	0.301672031305638
Merged-chr9-13466596-4	chr9	13466498	13466698	+	899.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35237.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	3.97715068868547	4.15308446935878	4.02853276558191	4.13048067816778	4.17373588885824	4.09968966317252	4.23796597218761	4.29538034897686	0.313507544710053	0.432986938942668	0.722758873865112
Merged-chr2-116976009-4	chr2	116975880	116976080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	75828.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	6.1174481918191	6.94268746682892	6.43228167002816	5.88909529175238	6.56614662066403	6.65952630173553	6.66320581690658	6.29991192151797	0.22174556562172	0.444905798560623	0.73115209509395
Merged-chr2-181487764-5	chr2	181487718	181487918	+	754.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5388.0	NM_183181	241850.0	Mm.87455	NM_183181	ENSMUSG00000055882	Abhd16b	1700095H12	abhydrolase domain containing 16B	protein-coding	3.9034460725278	3.99921661847552	4.17789662295045	3.72848967766166	3.89336566094541	3.67525719679583	4.03035844475464	4.17517883933279	0.0135056453484131	0.976434083958423	0.991537706656775
Merged-chr17-35173531-4	chr17	35173455	35173655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019467, intron 1 of 7)	intron (NM_019467, intron 1 of 7)	2497.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	5.541713808781	5.05660173416828	5.13623717086859	5.16596448926592	5.58818594465446	5.37748468405236	5.20926685016007	5.3808251609425	0.314819488088799	0.297419516247025	0.609542591544931
Merged-chr19-55218609-4	chr19	55218552	55218752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 12 of 20)	intron (NM_001081076, intron 12 of 20)	22584.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	6.4698565317666	6.62600896686654	6.64795785823842	6.4922250746192	6.86290575469575	6.83844269248223	6.38524826298597	6.17671818095276	0.0691627577328778	0.776748710804098	0.913014097434423
Merged-chr13-59011711-4	chr13	59011623	59011823	+	996.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	204026.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	5.49138930315868	5.21175934449725	5.23402825515719	5.69133873129349	5.06474550075938	5.12971560291557	5.29967936484086	5.32243999556181	-0.427372695061209	0.165274706504234	0.455900168074775
Merged-chr17-15829650-3	chr17	15829566	15829766	+	711.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3080.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	3.3263848680031	3.15573418099527	3.66999381327925	3.16947137161505	3.16710049667325	3.32221678700405	3.07015107227861	3.38001767394303	-0.370470614613279	0.514921582757038	0.7773081172237
Merged-chr15-95826119-4	chr15	95825996	95826196	+	967.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	3976.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	4.54745709166308	4.86243828761486	4.78389445991958	4.4154948020553	4.78675864494326	4.72348824328897	4.79603204599802	4.62866509937831	0.184753613921793	0.602092190929018	0.827431600688833
Merged-chr4-116144554-4	chr4	116144436	116144636	+	934.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026547)	promoter-TSS (NM_026547)	80.0	NM_026547	68075.0	Mm.132803	NM_026547	ENSMUSG00000028701	Lurap1	1520402A15Rik|Lrp35a	leucine rich adaptor protein 1	protein-coding	4.70828272563957	5.14295958567795	5.24434475603473	4.95468730459678	5.02297170440055	4.80199390160669	4.98037140697987	4.43023031133697	-0.374303554577522	0.297745710651547	0.60998030561342
Merged-chr6-134877035-3	chr6	134876926	134877126	+	859.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167694, intron 3 of 3)	intron (NM_001167694, intron 3 of 3)	10759.0	NR_074084	14760.0	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	2.72876079722697	2.8683502228044	3.02577089871116	2.73400555921713	3.61986622638516	3.3296076262682	3.63397462001586	3.08950476247141	2.40687121374698	7.23220919790236e-05	0.00154424642365684
Merged-chr18-39854045-3	chr18	39853945	39854145	+	736.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80548.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	3.29189510343902	3.54551054252478	3.29225122141823	3.63677672044223	3.70176294575743	3.64969508640091	3.76677406302624	3.6376544161442	0.707764508224682	0.163137506370322	0.452706698401916
Merged-chr17-45619567-2	chr17	45619467	45619667	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17465.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	3.16358377976834	3.46951477387853	3.16398066756114	2.76561421146614	3.22353259645649	3.50949842573164	3.21264739888666	3.28144419543927	0.552418595478036	0.358571345808101	0.664533804339698
Merged-chr11-22286538-3	chr11	22286412	22286612	+	962.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252515, intron 1 of 24)	intron (NM_001252515, intron 1 of 24)	283.0	NM_153078	216565.0	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	4.14299365022247	4.11955803844797	4.14363732284323	3.90533678836524	3.83044244427395	4.02603996995504	3.98832559790005	4.05064945292657	-0.27145184092013	0.523361898618352	0.782464816143387
Merged-chr2-167713301-7	chr2	167713209	167713409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	22132.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	5.7032226067259	5.43685222828797	5.92121754746292	5.58418444276048	6.01696015978162	6.20110140127722	5.91274361193834	6.04322650093191	0.617389040588813	0.0160351935864103	0.109852651038219
Merged-chr10-96618020-3	chr10	96617874	96618074	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007569, intron 1 of 1)	intron (NM_007569, intron 1 of 1)	973.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	4.96084353920056	5.11036320671454	5.38734639851275	4.88478672237307	5.6122595896366	5.61387275797934	5.27447562421373	5.17219376300929	0.642024633524171	0.0415527610918101	0.206455673722878
Merged-chr12-69574703-8	chr12	69574585	69574785	+	702.510437	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8343.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	3.83696106054348	3.50820075245701	3.64219763288715	3.50804017370344	3.53580876313322	3.58813109359138	3.82063378941657	3.69196781255626	0.123988850884928	0.796980082598555	0.921466077162776
Merged-chr5-64377924-4	chr5	64377823	64378023	+	838.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	90019.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	3.90534172212571	3.75028333900735	3.80830727641365	3.70247432065962	3.97384413744412	3.97872193477113	3.74148770153166	3.58593635484727	0.141129527316254	0.758040964728853	0.904926340425875
Merged-chr1-33883547-4	chr1	33883464	33883664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177235, exon 2 of 7)	5' UTR (NM_177235, exon 2 of 7)	24057.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	6.55534359918288	6.38663032120743	6.198264012028	6.59126212083183	6.21317572176409	6.56598197025472	6.52299418066528	6.36758890194368	-0.0531655658287096	0.817450588328882	0.929864087746691
Merged-chr2-32587913-4	chr2	32587826	32588026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011373, intron 1 of 4)	intron (NM_011373, intron 1 of 4)	848.0	NM_011373	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	6.468114401609	6.29943147798598	6.24915996852255	6.40907566206007	6.54697815588857	6.48454371938718	6.6650790534783	6.51409941677247	0.282383326416733	0.181484321279344	0.478209473377354
Merged-chr11-26387360-4	chr11	26387291	26387491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277273, intron 1 of 13)	CpG	307.0	NR_102382	67030.0	Mm.18875	NM_025923	ENSMUSG00000004018	Fancl	2010322C19Rik|AW554273|B230118H11Rik|Phf9|Pog|gcd	Fanconi anemia, complementation group L	protein-coding	7.44988554585454	7.55575197109084	7.93053400943433	7.51241113206836	7.4022821212155	7.62851821146102	7.45253329122672	7.57533936673633	-0.141779643335392	0.456566164398384	0.739917647952291
Merged-chr19-36792791-4	chr19	36792691	36792891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41441.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	5.09518912060319	4.98849301152208	5.16346647823012	4.96323080306366	5.28224444056828	5.2721076874071	5.61912847591325	5.42530365857784	0.660626004444453	0.0248050115502588	0.147612734481722
Merged-chr9-57433475-4	chr9	57433393	57433593	+	891.3833619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152145, intron 3 of 6)	intron (NR_152145, intron 3 of 6)	6243.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	4.53918850658605	4.37727172901993	4.28726299089973	4.44459923512168	4.36390417632964	3.97410450168208	4.5919438836265	4.61096208025385	-0.0133706639153238	0.973327457209613	0.990485651958264
Merged-chr10-59296464-4	chr10	59296335	59296535	+	921.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26861.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	3.9968124552461	4.69030740745408	4.09897749630415	4.18246544024071	4.1714136665334	3.88974640931234	3.87236005352979	4.47405767248184	-0.359933280332582	0.441223022436525	0.728396857622944
Merged-chr5-114773541-4	chr5	114773449	114773649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019834)	promoter-TSS (NM_019834)	-57.0	NM_001347400	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	7.95335708406508	8.04462195760609	7.53307175582359	7.67316582940219	7.56789862137559	7.65368545084985	7.44879939262774	7.42137577130729	-0.379396028164932	0.0482928004500707	0.226848362913983
Merged-chr17-86536046-4	chr17	86535927	86536127	+	866.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 10 of 14)	intron (NM_011104, intron 10 of 14)	-217837.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	4.21899897924269	4.52698999346947	4.01873774475269	4.26211066151438	4.57033279080079	4.24828820750621	4.10587671255433	4.34941711185545	0.161005311292761	0.695685490796826	0.876816247001811
Merged-chr5-100860847-4	chr5	100860747	100860947	+	963.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172715, intron 3 of 12)	intron (NM_172715, intron 3 of 12)	14618.0	NM_172715	231510.0	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	5.36315744245529	5.23410931020714	5.73878803117367	5.24403746634919	4.90409835385656	4.88086466853406	4.67621790826141	5.12040126396472	-0.940862163022934	0.00445402495275276	0.0435964029306915
Merged-chr12-111071942-4	chr12	111071812	111072012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198023, intron 2 of 11)	intron (NM_198023, intron 2 of 11)	32114.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	6.64953075269594	6.8589940236511	6.38253134444015	6.59670894121003	6.80295740422657	6.48232313746789	6.60165058916501	6.56793268837626	-0.00955625954071585	0.965471904663816	0.987772734750557
Merged-chr4-59837943-4	chr4	59837810	59838010	+	894.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	32260.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	4.38989783209779	4.09194096374916	4.13007973901657	4.43442030967504	4.32740538450587	4.099650111466	4.20446592162386	4.07862922759804	-0.228243294390185	0.576330917551171	0.813496063401474
Merged-chr16-76332300-3	chr16	76332218	76332418	+	892.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358238, intron 2 of 3)	intron (NM_001358238, intron 2 of 3)	40731.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	3.37776887784167	3.6555591860848	3.55918041715315	3.11625015181401	4.12314993298323	3.73394859281338	3.75065995890232	3.4996445086713	1.15913812672193	0.0289828068171756	0.16359771660902
Merged-chr8-81345380-3	chr8	81345269	81345469	+	755.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024617, intron 1 of 24)	intron (NM_001024617, intron 1 of 24)	2807.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	3.98024421183938	3.950925967215	3.35371470809115	4.21661159493714	2.74087270770271	2.95631118433595	2.91680023819444	3.08057596014182	-5.34725984905513	2.43737068681941e-07	9.62761421293668e-06
Merged-chr12-111447211-3	chr12	111447111	111447311	+	857.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009396, intron 3 of 11)	intron (NM_009396, intron 3 of 11)	4550.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	3.62071400332064	3.67204628504683	3.62119843841884	3.70138150479827	3.62415299477652	3.89614078791173	3.80801805252979	3.56306379759289	0.203197997716375	0.662992718021297	0.860346663968351
Merged-chr8-105516200-6	chr8	105516134	105516334	+	933.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2512.0	NM_008289	15484.0	Mm.5079	NM_008289	ENSMUSG00000031891	Hsd11b2	11HSD2	hydroxysteroid 11-beta dehydrogenase 2	protein-coding	3.91448220999943	3.79490517746973	3.48690077534922	3.58669939935921	3.7190681513917	3.89050914176571	3.89766532761467	3.71643267761251	0.315449635496154	0.499573622841474	0.768387448003553
Merged-chr9-102520408-4	chr9	102520300	102520500	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024291, intron 3 of 10)	intron (NM_024291, intron 3 of 10)	14262.0	NM_024291	16716.0	Mm.101692	NM_024291	ENSMUSG00000035606	Ky	CD1|D9Mgc44e|ky	kyphoscoliosis peptidase	protein-coding	4.74809986563567	5.22963965391574	5.00445225256575	4.5706951271886	5.18177881028484	5.00232627782392	5.01230653576112	4.52688771624664	0.109679229890482	0.768731241498421	0.90939721515425
Merged-chr13-8996101-4	chr13	8996003	8996203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027000)	promoter-TSS (NM_027000)	-91.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	8.19034252214838	8.36042919674269	7.95150110071862	8.22188861823873	8.48484432368089	8.39937218906379	8.27959620673417	8.32403502243852	0.233651572224865	0.156176654870046	0.442021137941209
Merged-chr2-154408064-4	chr2	154407975	154408175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009228)	promoter-TSS (NM_009228)	9.0	NM_009228	20648.0	Mm.1541	NM_009228	ENSMUSG00000027488	Snta1	AW228934|Snt1	syntrophin, acidic 1	protein-coding	6.34308943296427	6.21951341627044	6.44826701367251	6.48152852779474	6.3938253566576	6.12247172571392	6.59968553494155	6.14467255077769	-0.0698704645216009	0.766179706676277	0.908538055867635
Merged-chr3-10292784-4	chr3	10292716	10292916	+	905.2374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029310, intron 1 of 5)	intron (NM_029310, intron 1 of 5)	8367.0	NM_001357159	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	4.4805826397204	4.05256295459946	4.6982340402728	4.47793923077641	4.27846266597425	4.07654837259594	4.4603831037449	4.39696397671473	-0.315464865995439	0.440587779159847	0.727944976505159
Merged-chr11-94990918-4	chr11	94990816	94991016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172261)	promoter-TSS (NM_172261)	-296.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	6.27515636053166	6.36652863936353	5.97409115958847	6.08751330203541	6.47600151412315	6.66308860113866	6.5177136420635	6.54656713191231	0.547885460046719	0.014124345987888	0.100604148945831
Merged-chr16-50409568-4	chr16	50409465	50409665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	22824.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	5.64166979000693	5.746360254752	6.03171183853011	6.12679791469469	6.13016024737472	5.97934186404004	6.13866196111297	5.96303365085087	0.221023088611028	0.390271161123242	0.690455897283702
Merged-chr17-29765301-4	chr17	29765198	29765398	+	961.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48281.0	NM_001163741	68597.0	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding	4.05070852260094	5.52414508746919	4.23238733942914	4.74479478874459	4.73024934338505	4.88617375144627	5.35022734817216	4.5794071867808	0.312113165877461	0.699660582211381	0.878885016610616
Merged-chr8-69209003-4	chr8	69208923	69209123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013379)	promoter-TSS (NM_001013379)	-23.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	6.96077470148202	7.12858171600832	6.89466757714613	7.17731279638938	7.06115344577969	7.28675302585193	7.17478786170089	7.00842722106274	0.105473878369319	0.586486301080988	0.818678078435239
Merged-chr2-3657588-3	chr2	3657477	3657677	+	676.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-55881.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	3.4842105117292	3.41319171030579	3.29538311088252	3.34536339471793	3.55209577003706	3.66067192506704	3.98970739869788	3.88401492382622	1.25367730429761	0.010798957475665	0.0834773017115939
Merged-chr3-62497279-1	chr3	62497179	62497379	+	614.0	f0_c57.idr	intron (NM_028136, intron 4 of 24)	MER2|DNA|TcMar-Tigger	9709.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	3.00694138042457	3.22276312717506	3.39623670171012	3.12199970723163	3.77865909163856	3.39275583605077	3.58752504682921	3.50205826622369	1.35553834444691	0.0107982234439309	0.0834773017115939
Merged-chr5-150621811-4	chr5	150621709	150621909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362416, intron 6 of 7)	intron (NM_001362416, intron 6 of 7)	-27284.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	6.18670409367757	6.72484979402035	6.31994010094887	6.4296978539527	6.14133905566455	6.36394698957331	5.9171719557376	5.70671103742974	-0.57479487825948	0.0291027189640432	0.163990880777019
Merged-chr11-63230960-4	chr11	63230862	63231062	+	936.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57D|LTR|ERV1	98159.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	4.10216895458077	4.31055134537169	3.87335879969684	4.2327189758113	4.53423999740999	4.22994305863244	4.5609674400039	4.8988605107485	0.998384752987004	0.0161623053862746	0.110447075181417
Merged-chr13-62785807-7	chr13	62785698	62785898	+	996.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256065)	promoter-TSS (NM_001256065)	10.0	NM_001256065	380850.0	Mm.439823	NM_001256065	ENSMUSG00000091183	Gm5141	-	predicted gene 5141	protein-coding	5.32572848419435	5.18567084352615	5.38517650244582	4.60974603206304	5.11395580485384	5.55962651262098	5.70309681122752	5.56699449379149	0.638758401911821	0.0654192071018824	0.272276560770956
Merged-chr3-127932655-3	chr3	127932554	127932754	+	808.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040552, intron 3 of 4)	intron (NR_040552, intron 3 of 4)	16483.0	NR_040552	329753.0	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	3.95266995542103	3.88867192457543	4.26749937239582	3.91280757201768	3.91104269466691	3.85293229718331	4.39537160769909	4.00075826054305	0.1305785600362	0.770132689378731	0.910056855603697
Merged-chr10-15171309-3	chr10	15171187	15171387	+	750.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	410998.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	4.22072928478753	3.5150116652156	3.95118290075803	4.45681850855881	3.07205134913461	3.10185796855485	3.35071432972879	3.06594798592727	-3.54879207030914	4.36822253336613e-07	1.63903907065086e-05
Merged-chr8-26885530-4	chr8	26885433	26885633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61110.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	5.84488886661877	5.99741666653389	6.44354748977886	6.49880051643178	5.75172525033494	6.0943797960261	5.88762204625065	5.62775518371551	-0.613643434280976	0.0283404665133947	0.161328060297259
Merged-chr14-120363443-4	chr14	120363356	120363556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	57004.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	6.17778847550515	6.28686801178062	6.95176652627219	7.19894082011282	6.0021618591196	5.91741251988863	6.12608849206582	6.33152604587959	-0.940883075091178	0.00173648519605009	0.0209564733417514
Merged-chr10-62505543-3	chr10	62505502	62505702	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	2155.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	4.04435285384142	4.24326101872164	4.26089293150444	3.90308408276075	3.76260230709921	4.01761718032126	3.87959022395188	3.99461262289801	-0.547824372266131	0.212612783010135	0.517599195631657
Merged-chr11-32268134-1	chr11	32268034	32268234	+	643.0	f0_balb.idr	promoter-TSS (NR_104306)	promoter-TSS (NR_104306)	-427.0	NM_001284359	17168.0	Mm.263161	NM_181569	ENSMUSG00000020289	Nprl3	Aag|CGTHBA|HS-26|HS-40|Mare|Phg|Prox1|m(alpha)RE	nitrogen permease regulator-like 3	protein-coding	3.60307190800095	3.07356841940634	3.40934085524165	3.35231551583506	2.72345669867192	3.35652182177137	3.0393783551697	3.40729059377968	-0.784668046534214	0.230361609338186	0.53971870463126
Merged-chr15-41831557-3	chr15	41831437	41831637	+	904.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130164, intron 1 of 5)	intron (NM_001130164, intron 1 of 5)	579.0	NM_001130164	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	3.61144472245674	3.33331018786307	3.30298366274739	3.24991212884295	3.19931860161197	3.22643026870999	3.23187038013012	3.46488250372982	-0.332789246215734	0.537672335874089	0.791199228789559
Merged-chr10-6712474-4	chr10	6712373	6712573	+	950.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46120.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	4.80349104769309	5.0233734600301	4.66983600214978	5.3899590817215	5.3040828440635	5.43930409780749	5.57534526542188	5.23239227637846	0.662897080363627	0.0566825462870644	0.249383443629189
Merged-chr12-28638944-3	chr12	28638835	28639035	+	862.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-2982.0	NM_011300	20115.0	Mm.279839	NM_011300	ENSMUSG00000061477	Rps7	Mtu|Rps7A|S7	ribosomal protein S7	protein-coding	2.37197286207935	2.32076310598335	2.37216186819787	2.0492019859985	3.11966533846406	3.00384247512192	3.09619853168648	3.25626102416847	7.04891204901795	5.46723433899708e-12	5.22352044316071e-10
Merged-chr9-40991113-3	chr9	40991011	40991211	+	639.833313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_019465, intron 3 of 9)	intron (NM_019465, intron 3 of 9)	13517.0	NM_019465	54698.0	Mm.42791	NM_019465	ENSMUSG00000032021	Crtam	-	cytotoxic and regulatory T cell molecule	protein-coding	3.63241411402813	3.55142934063444	3.68660966945061	3.97437764962114	3.69000345373042	3.50684355536805	3.67190893906092	3.92314964138012	-0.0879392889052001	0.858493626846009	0.946576014812915
Merged-chr1-185329291-4	chr1	185329164	185329364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198653, exon 1 of 23)	exon (NM_198653, exon 1 of 23)	137.0	NM_198653	381314.0	Mm.275841	NM_198653	ENSMUSG00000026618	Iars2	2010002H18Rik|C79125	isoleucine-tRNA synthetase 2, mitochondrial	protein-coding	6.60093449578347	6.55058392034563	6.77236651987073	6.31243264693123	6.38355119716113	6.56338574560171	6.26119803386531	6.308157733585	-0.253868386543862	0.26835770795212	0.580107684368438
Merged-chr19-40343202-3	chr19	40343105	40343305	+	807.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034963, intron 12 of 22)	Tigger16a|DNA|TcMar-Tigger	59105.0	NM_001034964	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	3.95404590386271	3.87805229851399	3.95463745808379	3.882501347405	3.7981253154098	3.977874337691	3.62415537122405	3.95224502280338	-0.206230182922817	0.641369921868301	0.848684971999741
Merged-chr2-140863702-4	chr2	140863591	140863791	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-192215.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	4.31205719063158	4.65219613018418	4.96789355484692	4.26968248426166	4.70994041539068	4.79712750410375	4.38990803196424	4.76976196934957	0.230880144257425	0.559435324406257	0.803828312727864
Merged-chr11-21371304-4	chr11	21371195	21371395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139297)	promoter-TSS (NM_139297)	-28.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	7.33824001299136	7.45562106707613	7.19744527140491	7.55454914057804	7.45087769386161	7.49583180709531	7.60352287165839	7.13324437538025	0.0400583887057226	0.837796952693298	0.938468501433934
Merged-chr2-58166961-4	chr2	58166868	58167068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045895, intron 2 of 3)	intron (NR_045895, intron 2 of 3)	2994.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	5.06457549797034	4.80496502141441	5.06544446580528	5.19999341583873	4.69246882265927	4.47572451804891	5.00955683232147	4.44399338811366	-0.753436865411728	0.0355303283399745	0.18709870836066
Merged-chr11-70647107-4	chr11	70646968	70647168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027445)	promoter-TSS (NM_027445)	-29.0	NM_024211	67863.0	Mm.296082	NM_024211	ENSMUSG00000014606	Slc25a11	2310022P18Rik|2oxoc	solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11	protein-coding	7.63765981041831	7.85746170595345	7.27313223714317	6.94502621516443	7.52930550528851	7.67869208481603	6.98520694656843	7.24608131189895	-0.109499963697355	0.671913837479396	0.864972533221387
Merged-chr2-160176314-4	chr2	160176271	160176471	+	823.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	151123.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	4.25983706304488	4.00122317430549	3.68345569148544	3.84351973024765	3.89472105927195	4.2207319358232	3.60898964854412	4.092892140829	0.0311478979785259	0.947832929690055	0.981348536548879
Merged-chr8-117345327-4	chr8	117345177	117345377	+	757.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-3893.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	3.05744736250918	2.9528322395287	3.05784336816034	2.95823310856939	3.06750431982191	3.10709167225404	2.98788079809711	2.86970834221865	0.0388216385390237	0.946340282005676	0.980868358011675
Merged-chr4-54669272-2	chr4	54669171	54669371	+	684.5	f0_balb.idr|f1_balb.idr	Intergenic	L2c|LINE|L2	-278674.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	3.12949833374166	3.22689052929324	3.07388456656823	3.66844977654418	2.6142589185381	2.70453772418472	2.59140687582134	2.59613341450513	-3.89098671928118	2.08207927227949e-05	0.000527215654648102
Merged-chr7-80828636-4	chr7	80828529	80828729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25298.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	6.20659938701019	6.20358471107718	6.32920883913516	6.15248058535017	5.79584220740156	5.76310548583484	5.69548998895316	5.60886914160779	-0.790388884380175	0.00107220542549695	0.0142199571420621
Merged-chr6-53995724-4	chr6	53995634	53995834	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110484, intron 1 of 3)	MLT1H2|LTR|ERVL-MaLR	17043.0	NR_110484	320178.0	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	4930590G02Rik	RIKEN cDNA 4921529L05 gene	ncRNA	4.69851557574418	4.57580355180664	5.13342026788281	4.77067759091202	5.26494280039711	4.87837243322053	5.25134431849314	5.2185129228018	0.706612282505874	0.0339284919700247	0.181759538349104
Merged-chr17-35165807-3	chr17	35165707	35165907	+	958.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020027)	promoter-TSS (NM_020027)	-930.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	4.26126573783035	4.27542437992507	4.34911604367508	3.95887390209052	4.56859828385503	4.34287848625289	4.19765221811511	4.3035550059141	0.402627430674358	0.316999018758252	0.628905690750891
Merged-chr9-48707641-3	chr9	48707539	48707739	+	940.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033324, intron 4 of 6)	intron (NM_001033324, intron 4 of 6)	-102516.0	NM_001311062	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	3.67142161217087	3.58531467144053	3.21112630041215	3.60327835410073	2.94297291769827	3.19350837341082	3.13744141322531	2.93816280576576	-1.91293729777519	0.00160953988728258	0.0197531770567158
Merged-chr13-107021866-5	chr13	107021684	107021884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015471)	promoter-TSS (NR_015471)	330.0	NM_001145779	16563.0	Mm.355686	NM_008442	ENSMUSG00000021693	Kif2a	C530030B14Rik|Kif2|Kns2|M-kinesin	kinesin family member 2A	protein-coding	4.49492692741341	4.91474043869202	4.8298106705876	4.80010913050316	4.73195760197816	5.00284240936874	5.00859390511072	4.96573820545013	0.304487154859318	0.364909880755884	0.669640641603313
Merged-chr5-143470964-4	chr5	143470847	143471047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 2 of 14)	intron (NM_144915, intron 2 of 14)	6454.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	6.68201283325953	6.40936284319659	6.52581752441253	6.76507396206377	6.63917000954467	6.75133925953735	6.52543676319674	6.70764833386479	0.0628852428640475	0.768054483327318	0.909266558474345
Merged-chr9-53635023-3	chr9	53634943	53635143	+	872.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027807, exon 8 of 19)	exon (NM_027807, exon 8 of 19)	-24693.0	NM_144784	110446.0	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	3.66147927650601	3.38376479127058	3.45137213683944	3.74147732301172	3.600747771669	3.44380492188162	3.49392630194598	3.44959776719738	-0.24509438689602	0.627752861465851	0.841310103863188
Merged-chr6-121244607-5	chr6	121244494	121244694	+	615.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1312.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	3.46107323322318	3.0796621662593	3.24510205913502	2.95202361240201	3.38692856406469	3.35880441620817	3.11114203502948	3.40878668755927	0.503006269188502	0.37414871682778	0.677543670561353
Merged-chr4-54794065-1	chr4	54793965	54794165	+	628.0	f0_balb.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-153880.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	2.59909352582526	2.55387325028435	2.7122409540767	2.71856217401989	2.14431525817184	2.20295754284809	2.25934832652454	2.33775344700722	-3.02539091222921	0.00109948731477357	0.0145034113377072
Merged-chr19-5295545-4	chr19	5295447	5295647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030109)	promoter-TSS (NM_030109)	-92.0	NM_030109	319322.0	Mm.196532	NM_030109	ENSMUSG00000024853	Sf3b2	145kDa|2610311M13Rik|2810441F20Rik|B230398H18Rik|SAP145|SF3b1|SF3b145|SF3b150	splicing factor 3b, subunit 2	protein-coding	7.50718584077852	7.72146145080576	7.14937013362744	7.30983665222761	7.88710515322217	7.49809273051519	7.39592908007795	7.46602152699607	0.193675036114165	0.363930310503254	0.668909662018054
Merged-chr2-122743114-4	chr2	122742998	122743198	+	933.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019788, intron 2 of 4)	intron (NM_019788, intron 2 of 4)	4593.0	NM_019788	18457.0	Mm.268921	NM_019788	ENSMUSG00000005804	Bloc1s6	BLOC-1|Pldn|Stx13bp1|pa	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin	protein-coding	4.90548861894907	5.73105438220143	4.90630503133783	4.49902457864081	5.40972792278801	5.38526909217162	4.67800490425891	5.01289834521732	0.113792336917295	0.788555478395062	0.91812687233996
Merged-chr9-85587298-4	chr9	85587239	85587439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161995.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	6.67029576017061	6.82273081882498	6.81158298355405	6.28871141166602	6.60778979390497	6.67349277395184	6.69509672476725	6.14131614545583	-0.150789878329397	0.543845869113391	0.794912862282994
Merged-chr12-82401690-4	chr12	82401598	82401798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 12 of 23)	intron (NM_001167983, intron 12 of 23)	90349.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	6.43627728324793	6.64952881593856	6.12502296980628	6.75480147810263	6.33109389688901	6.44833490584386	6.56575574813136	6.37985531350236	-0.146411030552608	0.540822053354999	0.792982745230616
Merged-chr3-20018226-4	chr3	20018134	20018334	+	990.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 8 of 16)	MTD|LTR|ERVL-MaLR	17076.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	5.46009485097152	5.32729258488679	5.31797078825217	5.44704855825106	5.30622204794596	5.07252019239389	5.69854172754162	5.18709950626781	-0.0930562639427878	0.757382709322268	0.904677695365828
Merged-chr7-35121083-11	chr7	35120935	35121135	+	899.420227	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001287523, exon 1 of 1)	3' UTR (NM_001287523, exon 1 of 1)	1742.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	4.42501097713617	4.33774834539578	4.2099983841962	4.14089496981942	4.02488612918137	3.95545386692929	4.5175533523713	4.57206368270301	0.0417558285146703	0.922049470072039	0.971081737519534
Merged-chr16-4909335-4	chr16	4909225	4909425	+	879.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 2 of 17)	intron (NM_001357062, intron 2 of 17)	23225.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	4.06340837559322	3.73090151959315	3.72686764342275	3.87582858579409	3.66087772201575	3.78911051607152	3.86592799726138	4.01850574678218	-0.0614673257252613	0.89275245938404	0.959854195527341
Merged-chr1-45924790-4	chr1	45924725	45924925	+	931.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016917, intron 1 of 7)	intron (NM_016917, intron 1 of 7)	769.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	4.1878050679251	4.39671690705424	3.94016734964476	4.45509609813265	3.81912653361879	3.94796414422968	4.2973114015661	4.27302833879776	-0.445838070241056	0.31594976269264	0.62781575496774
Merged-chr9-59292306-3	chr9	59292220	59292420	+	661.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359282, intron 1 of 6)	intron (NM_001359282, intron 1 of 6)	748.0	NM_028121	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	3.72121994519761	3.58023457263795	3.37424753732191	3.64113566934045	3.9157804515309	3.89105386126338	3.6551410999609	3.66780736062926	0.611703413396721	0.198649151333821	0.500252890245534
Merged-chr6-83632061-4	chr6	83631965	83632165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24051.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	7.80042185823261	7.29127788370952	8.3374834866555	8.33146055456438	7.42181182975338	7.09017411455702	7.7174223819966	7.86302348052101	-0.594166158006731	0.0287067808567403	0.16271061909555
Merged-chr2-166967143-3	chr2	166967032	166967232	+	959.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	-2415.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	3.90025302232153	3.61202107829199	3.99456604838962	4.06618516496566	3.94441732204471	3.62251222950422	3.73139088152784	4.0791969628711	-0.142032239045869	0.763985895831759	0.907492132891533
Merged-chr9-88956928-4	chr9	88956843	88957043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009742)	promoter-TSS (NM_009742)	23.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	6.69143766376178	6.74175463228098	6.79235653636957	5.93410477780837	6.75304272270471	6.96827790627176	6.811117024444	6.54682936144014	0.298885188192262	0.262209462096116	0.574115106927125
Merged-chr7-19225157-3	chr7	19225053	19225253	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175668)	TTS (NM_175668)	-3236.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	6.46145185475218	6.79563265161156	6.81612107496595	6.47879152328416	4.0622944295368	4.4012723661308	4.54251523293991	4.44312636502224	-4.59962342325743	4.02224814875521e-30	5.02280001719732e-27
Merged-chr17-34895222-4	chr17	34895029	34895229	+	946.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198886, intron 1 of 1)	CpG	570.0	NM_198886	193736.0	Mm.161119	NM_198886	ENSMUSG00000049823	Zbtb12	BC020447|Bat-9|Bat9|G10|NG35	zinc finger and BTB domain containing 12	protein-coding	4.26715398268156	3.86434694292731	3.85252592282698	3.67440359159223	3.77479254715386	3.56973579924767	3.62527894102453	3.74801481112362	-0.697609350532094	0.153080517587599	0.437555330104179
Merged-chr2-157135227-4	chr2	157135128	157135328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018851)	promoter-TSS (NM_018851)	-6.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	7.17410763704953	7.75105844756498	7.35114357594957	7.1992971823993	7.67573175307069	7.42165058104058	7.45912907122135	7.23913170959863	0.100732864710172	0.637588571142559	0.846854206108531
Merged-chr11-29693819-4	chr11	29693715	29693915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194051)	promoter-TSS (NM_194051)	41.0	NM_194051	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	6.63858227389104	6.66509413929119	6.91985937695881	6.49004159190773	6.67517279089183	6.80068259668188	6.94576705021302	6.69623243318244	0.150404050521219	0.481528855595354	0.756666940689708
Merged-chr11-78178626-4	chr11	78178544	78178744	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106113)	promoter-TSS (NR_106113)	-14.0	NM_001291236	68385.0	Mm.390375	NM_026708	ENSMUSG00000019437	Tlcd1	-	TLC domain containing 1	protein-coding	4.80476086762635	5.00025565373478	4.88317179383511	4.93817727777076	5.25625364867755	5.09472673374405	4.96744127142119	5.18021486331213	0.428992164091111	0.164843145339462	0.455081652333615
Merged-chr17-5397626-4	chr17	5397520	5397720	+	941.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21147.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	4.73647840075142	4.34425278725855	4.14555534176241	4.05081593173044	4.70987969644648	5.01405790694893	5.00436181228562	4.83925578798642	1.22651256368765	0.00140425444284676	0.0177066960492316
Merged-chr16-11140805-4	chr16	11140708	11140908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145931, exon 21 of 23)	exon (NM_145931, exon 21 of 23)	-6276.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	7.06538764370759	7.20173633893323	7.50504364621141	7.31488883880029	7.03727974418751	6.74260601685196	7.11340940176217	7.16695015137879	-0.348323263653851	0.0874739251002366	0.322506294142222
Merged-chr1-59316182-4	chr1	59316068	59316268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356389, intron 10 of 13)	intron (NM_001356389, intron 10 of 13)	59262.0	NM_001356389	271697.0	Mm.297713	NM_001033373	ENSMUSG00000026023	Cdk15	Als2cr7|Pftk2	cyclin-dependent kinase 15	protein-coding	6.03792316793543	5.93652512036861	6.12011528174959	6.35245148983992	5.79077471927959	5.85625088208341	5.62129718272465	6.19185439919187	-0.401987894895303	0.129788288237835	0.400998375227054
Merged-chr1-54913629-2	chr1	54913529	54913729	+	762.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	12758.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	3.21665390410107	2.99659321482088	3.10454073402666	2.90619995100909	3.44962253354374	2.95354700611941	2.68897965110743	3.21525158396782	0.218526560797624	0.740676020349405	0.897998236257649
Merged-chr11-94321652-4	chr11	94321561	94321761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361574, intron 1 of 9)	CpG	302.0	NR_155069	67684.0	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	5.93128513440162	6.24015499301679	5.46881387453228	5.76104390444407	6.09452462614911	6.17457867943482	6.01090319063933	6.28412876258178	0.412717028606818	0.126463271887498	0.395324076841466
Merged-chr4-57017398-2	chr4	57017302	57017502	+	624.25	f0_balb.idr|f1_balb.idr	intron (NM_001355492, intron 21 of 24)	intron (NM_001355492, intron 21 of 24)	-27011.0	NM_001142965	230235.0	Mm.207654	NM_001142965	ENSMUSG00000045589	Frrs1l	6430704M03Rik	ferric-chelate reductase 1 like	protein-coding	3.09506815147541	3.14373319202285	2.89971198252422	3.43703368117473	2.92228065944561	3.20514165320848	3.14296078937639	3.20957694112311	-0.195832722107305	0.746874451808369	0.900253617240193
Merged-chr13-43784496-2	chr13	43784396	43784596	+	686.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289915)	promoter-TSS (NM_001289915)	-616.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	2.54342645021956	2.85541581161532	2.89970449266954	2.71866744345083	2.73465410659814	3.01018832512649	3.11500398610436	3.1781394881593	1.12233945003301	0.0822818905876119	0.3113851605185
Merged-chr7-65650829-4	chr7	65650729	65650929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172310, intron 3 of 18)	URR1B|DNA|hAT-Charlie	5931.0	NM_172310	272396.0	Mm.35127	NM_172310	ENSMUSG00000030515	Tarsl2	A530046H20Rik	threonyl-tRNA synthetase-like 2	protein-coding	6.83204405608081	7.29696694033118	6.80450501838693	7.13112439922369	7.01092771051304	7.21927344190411	6.84062087917591	7.01385847890389	-0.0225739806512209	0.915941177032076	0.968877649575957
Merged-chr14-104849438-3	chr14	104849330	104849530	+	763.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015593, intron 2 of 5)	MLTR25C|LTR|ERVK	210283.0	NR_015593	320249.0	Mm.320725	NR_015593	ENSMUSG00000115432	D130009I18Rik	-	RIKEN cDNA D130009I18 gene	ncRNA	3.58636624465497	3.25798963173968	3.53525587213135	3.76762444184361	3.60262006516709	3.41724144128686	3.29421609710486	3.47957756479105	-0.334060490209964	0.529191445479602	0.785521310848194
Merged-chr7-97581007-4	chr7	97580918	97581118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081267, intron 1 of 15)	intron (NM_001081267, intron 1 of 15)	1122.0	NM_001081267	233532.0	Mm.43977	NM_001081267	ENSMUSG00000035623	Rsf1	4832420A03Rik|C030033M12Rik|Gm164|Hbxap|XAP8|p325	remodeling and spacing factor 1	protein-coding	6.22111327946888	6.05363656490339	6.18621401689685	6.18923516450687	5.42308401472314	5.51542823714644	5.91477347036537	5.80072702638004	-0.793891860919078	0.00216998051529796	0.0248949353077073
Merged-chr1-70856098-4	chr1	70856002	70856202	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177164, intron 3 of 3)	intron (NM_177164, intron 3 of 3)	130387.0	NM_177164	320460.0	Mm.360649	NM_177164	ENSMUSG00000045648	Vwc2l	A830006F12Rik|Brl	von Willebrand factor C domain-containing protein 2-like	protein-coding	5.76755711812064	5.28622798505596	5.83488573080157	6.04652841373838	5.23996282874065	5.07551118883973	5.69306978246003	5.36784958858819	-0.700473715260782	0.0289499048867938	0.163476817131067
Merged-chr14-7997381-4	chr14	7997281	7997481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3199.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	6.61831718702991	6.62132131349861	6.40739722415516	6.58229431754711	6.5605732532389	6.37276895886616	6.14231603768367	6.50510803803399	-0.220356173393387	0.320195382444825	0.63203513940766
Merged-chr14-40937777-3	chr14	40937687	40937887	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	10422.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	4.08109302810947	3.71155228590348	3.70663416511827	4.00042432506564	3.51991308552845	3.70894356773255	3.63759147400528	4.11810089943146	-0.373842179715608	0.449707212091663	0.734839862538956
Merged-chr9-109059241-4	chr9	109059129	109059329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001012236)	promoter-TSS (NM_001012236)	22.0	NM_001012236	22040.0	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	7.77816938507748	8.51918391200285	7.90326229853488	7.65626710747862	8.15016503107852	8.45948366890202	8.04926772465353	7.76604350013015	0.154153493198481	0.521605886333351	0.781481095862292
Merged-chr1-154788283-3	chr1	154788192	154788392	+	672.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62372.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	3.61227819169382	3.27709759433861	3.13644870980363	3.15089796779164	3.79292552567131	3.73199675416797	3.32341043132067	3.61062372237381	1.10249873801167	0.0398396153190527	0.201245048527064
Merged-chr6-148831456-4	chr6	148831281	148831481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081113)	promoter-TSS (NM_001081113)	86.0	NM_001081113	320727.0	Mm.260105	NM_001081113	ENSMUSG00000040029	Ipo8	6230418K12Rik|Abcc10|C130009K11Rik|MRP7|OM-1|Om1|Ranbp8	importin 8	protein-coding	6.20132923925408	5.71912204679877	6.06608380840807	6.15438941194225	5.90927959484496	5.94284362327686	5.90589969203114	6.14140616789479	-0.119911590843208	0.633939232201337	0.844935157053758
Merged-chr7-43668829-3	chr7	43668716	43668916	+	955.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-3215.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	3.63537114048458	3.92146874118999	3.50758564403459	3.45758908757958	4.11360355319041	4.26633845865992	4.11984535708573	4.05054415875989	1.41748239270641	0.0017079667670919	0.0206683724098665
Merged-chr12-35392369-4	chr12	35392273	35392473	+	911.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142616.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	4.33011595103563	3.79956284863747	4.45138250811865	4.66018517717407	4.28379103304924	4.00476157962038	4.3918420630479	4.09800103810497	-0.367620031640813	0.42101232559884	0.713655443512669
Merged-chr14-118925452-1	chr14	118925352	118925552	+	672.666687	f0_balb.idr	promoter-TSS (NM_025943)	promoter-TSS (NM_025943)	18.0	NM_025943	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	3.41172578474316	3.81050732342773	3.7327863272928	3.64688477041083	3.2467083354085	3.46418909759631	3.51438429398742	3.63243173639304	-0.639144938463886	0.213285125259279	0.518615172029864
Merged-chr3-142596983-3	chr3	142596870	142597070	+	858.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010259, intron 1 of 10)	Lx9|LINE|L1	2123.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	3.66008771103193	3.48121236919126	3.66055318380021	3.83062398553828	4.23219638231334	4.10694685157363	4.25781385995333	4.11546751419701	1.3705219300024	0.00254935124195879	0.0281421017449417
Merged-chr3-144718015-4	chr3	144717912	144718112	+	868.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 1 of 10)	intron (NM_001282037, intron 1 of 10)	2323.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	4.23427692108709	4.32810516619629	4.52756052296768	3.87598781422648	4.47997096894932	4.40946292069402	4.46839122963035	4.18457954483066	0.354980926641939	0.394586741331635	0.693682147756976
Merged-chr10-71348505-4	chr10	71348395	71348595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	CpG	732.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	5.95270858393574	6.19879525255142	6.47757518154558	6.46765309800854	5.88949232197505	5.90518236129507	6.03375554412759	5.97248992238083	-0.54689671065382	0.0280448651761649	0.160260129044386
Merged-chr6-83349453-4	chr6	83349346	83349546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175277)	promoter-TSS (NM_175277)	-38.0	NM_175277	78653.0	Mm.391470	NM_175277	ENSMUSG00000045160	Bola3	1810056O20Rik	bolA-like 3 (E. coli)	protein-coding	6.20333966832303	6.35629378286531	6.20443757476178	5.83034988488963	6.36885464554281	6.04950740654973	6.45055287181013	6.25729680168253	0.224619988785601	0.369885391123124	0.674093562095216
Merged-chr15-13435408-3	chr15	13435308	13435508	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-261733.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	4.58833111232831	3.87648734759388	4.48041816296749	4.91265577614685	3.7448346985209	4.0464914369762	4.34095954640076	3.85921027197227	-1.25794163555531	0.0105962907649285	0.0823309005956608
Merged-chr1-93125445-4	chr1	93125352	93125552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9788.0	NM_001276710	11611.0	Mm.7457	NM_016702	ENSMUSG00000026272	Agxt	AGT|Agt1|Agxt1|SPT	alanine-glyoxylate aminotransferase	protein-coding	6.19861826349251	5.9233180372159	5.92924609065085	6.30040366509604	5.94466821400028	5.79498284166843	6.18643287480513	6.09809171715403	-0.15193948036604	0.548274086598585	0.797319519674758
Merged-chr4-127242940-4	chr4	127242835	127243035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030252)	promoter-TSS (NM_030252)	-849.0	NM_030252	80284.0	Mm.139607	NM_030252	ENSMUSG00000042380	Smim12	BC003266	small integral membrane protein 12	protein-coding	5.08912403653834	5.36348043882719	5.28596293738774	5.25934116460413	5.46373465910166	5.36629138785406	5.28952961888227	5.15517963004277	0.135113434964961	0.64100844909553	0.848560720572429
Merged-chr14-18331237-4	chr14	18331142	18331342	+	987.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009455, intron 1 of 5)	CpG	602.0	NM_009455	22194.0	Mm.4429	NM_009455	ENSMUSG00000021774	Ube2e1	UbcM3|Ubce5|ubcM2	ubiquitin-conjugating enzyme E2E 1	protein-coding	5.01728226231363	5.11856066962825	5.64055732779239	5.22912607381094	5.27594271746962	5.19499573638003	4.88066068951818	5.33575181117772	-0.152604008464488	0.638740437640846	0.847356362144027
Merged-chr19-53404805-4	chr19	53404726	53404926	+	998.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14192.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	6.59123820937415	7.38176099600757	6.72238719262151	5.81343460755895	6.45447079083097	6.55516373709002	5.9473247295928	5.63946668658458	-0.803382190363884	0.14014152383391	0.416213336303895
Merged-chr2-102942243-4	chr2	102942122	102942322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40557.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	8.01628561030556	8.01522892118683	8.05637928302327	7.82045469313674	7.86106584005564	7.98083990870789	7.72608059541842	7.71765774547319	-0.191547767820986	0.256226674931784	0.567812876264657
Merged-chr9-13847800-3	chr9	13847683	13847883	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20067.0	NM_176836	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	4.99468554636093	5.04994433691254	5.75721108948396	5.82747183290724	4.3122280310101	4.22154451676085	4.93556453336004	4.54006365588051	-1.86996681360246	7.61012145512575e-06	0.000215895111619927
Merged-chr7-99146252-4	chr7	99146144	99146344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5100.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	7.20546884630264	7.02444439577927	7.35433715062953	7.1968895287144	7.35424204568945	7.26681017537176	7.41313498292473	7.3392441538789	0.199957938800916	0.270321136738125	0.582168027784025
Merged-chr17-47851073-2	chr17	47850973	47851173	+	960.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16382.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	2.99872076431231	2.84631703385591	2.80080417802059	2.96463160843433	3.06891435315563	3.28343135305762	2.9883942407287	3.11464327006477	0.849249902258874	0.145849068713543	0.42565232470349
Merged-chr16-89959155-3	chr16	89959043	89959243	+	827.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145886, intron 1 of 27)	intron (NM_001145886, intron 1 of 27)	1684.0	NM_009384	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	3.35178895888235	3.22900352287889	3.24246634791179	3.45214907322273	3.45580271039139	2.94931618480117	3.17274292429484	3.12095844496472	-0.474014630549327	0.4166352594252	0.710633736953261
Merged-chr1-133418329-4	chr1	133418217	133418417	+	897.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011439, intron 1 of 13)	intron (NM_011439, intron 1 of 13)	5895.0	NM_011439	20668.0	Mm.8575	NM_011439	ENSMUSG00000070643	Sox13	AA407916|AW259412|AW540933|Sox-13	SRY (sex determining region Y)-box 13	protein-coding	4.16856933770725	4.50424201772355	4.96395276646387	4.7291556556943	4.32329888547884	4.00392467857936	4.34411360805661	4.56866944600362	-0.684030642651198	0.107735215951672	0.362030890576869
Merged-chr13-23702891-4	chr13	23702787	23702987	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010424, exon 6 of 6)	3' UTR (NM_010424, exon 6 of 6)	-4429.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	5.13290197364642	4.81208324719497	5.40881530134064	4.76348157597269	4.98372483563099	4.95340375594547	5.10850593916767	5.1302436096093	0.0127157259618466	0.970250755842672	0.989328178694086
Merged-chr1-43934768-3	chr1	43934649	43934849	+	899.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009418, intron 1 of 29)	intron (NM_009418, intron 1 of 29)	755.0	NM_009418	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	3.99009102799288	4.12836761392616	3.89204904995246	3.65088628033217	4.1184438201052	4.2940698793715	3.53081159142826	3.83758573077215	0.156512722088915	0.750028608444928	0.901576629816678
Merged-chr5-99245562-5	chr5	99245447	99245647	+	808.286682	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	7380.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.07215512180562	3.94178215713243	3.93308926976182	3.51095691597783	3.97454022953518	4.10501903212715	3.81518823072496	3.97894125175733	0.295401732145019	0.524069821640369	0.782734243333399
Merged-chr8-8459080-4	chr8	8458998	8459198	+	917.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	201675.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	4.77247509173692	5.36208705139675	4.85280364020954	4.05238587855245	5.29010659700028	5.50203472574645	4.86703790004158	4.9952155515804	0.65840229927865	0.124594190703909	0.391942807270675
Merged-chr13-5604366-4	chr13	5604242	5604442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	253750.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	7.28195737438906	7.09562959456609	7.31373108738614	7.22388305593335	7.18209713406086	7.3184271746226	7.13974518724383	6.69998973865144	-0.168240342809768	0.414041164136661	0.70884731629025
Merged-chr2-90538731-4	chr2	90538610	90538810	+	836.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	41937.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.4344426333454	4.82143149881968	4.58913647863468	4.52418273037198	4.20024746792527	4.28984823860147	3.86894275124357	4.10873665124793	-1.14036722415083	0.00521508170083204	0.0490103380490525
Merged-chr19-8798589-4	chr19	8798495	8798695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026329)	promoter-TSS (NM_026329)	-38.0	NM_026329	67710.0	Mm.22117	NM_026329	ENSMUSG00000071662	Polr2g	2410046K11Rik|A230108L04Rik|C76415|RBP7|Rpo2-7l	polymerase (RNA) II (DNA directed) polypeptide G	protein-coding	7.72183632811531	7.87112031037657	7.63970345120086	7.41466145161749	7.80085803615993	7.81710677573162	7.87202291807907	7.70978366839651	0.180133629157148	0.319389584449804	0.631249825944149
Merged-chr18-12738557-4	chr18	12738507	12738707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2748.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	6.01375996518845	5.75077006114025	5.85053031480431	6.3624639711892	5.90595084961887	6.25477664866114	6.42271862758623	6.1944259164596	0.253933584786021	0.356169623418363	0.662704502355483
Merged-chr4-3682109-2	chr4	3682009	3682209	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	3988.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	4.0086402364321	4.16375116991221	4.39112155801187	3.81639691675843	4.23147021194491	4.67930269983772	4.52452818504212	4.42889980287005	0.906281960068813	0.0294542870603798	0.16521092976129
Merged-chr19-59075736-4	chr19	59075636	59075836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175172, exon 1 of 15)	5' UTR (NM_175172, exon 1 of 15)	333.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	4.97577715501395	4.81895377718141	5.58740163120139	5.16745006915418	4.97493164518949	5.07944030298001	5.02155792926706	4.82197420759347	-0.364035898585119	0.287809445890914	0.59974203844105
Merged-chr14-8108359-3	chr14	8108287	8108487	+	915.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	10176.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	3.63186502523325	3.34691667010833	3.73164025219009	3.32639080740675	3.50695081134354	3.85187125968662	3.56515908756426	3.46570415843005	0.300103512068894	0.556849300839118	0.802235069284239
Merged-chr2-102917616-4	chr2	102917506	102917706	+	991.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15941.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	5.01110368459765	4.72277863626835	5.26271978543949	5.52946258635801	4.99220058324614	5.00310472943285	4.91707847442643	5.00855485533928	-0.390739264284547	0.264298573626523	0.576455127446606
Merged-chr11-82570871-4	chr11	82570779	82570979	+	987.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62474.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	5.14823558594148	5.39614308003888	5.39147063286955	5.30875803807607	5.56810130707829	5.03060094064612	5.02179854716947	5.24187455269988	-0.112696582877907	0.719601709475215	0.888022825078143
Merged-chr1-75317736-4	chr1	75317632	75317832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016878)	promoter-TSS (NM_016878)	-95.0	NM_001110831	13437.0	Mm.24680	NM_016878	ENSMUSG00000026209	Dnpep	AA407814	aspartyl aminopeptidase	protein-coding	9.48593615592461	9.64189394646303	9.51775607647993	9.48528594753815	9.4279338357237	9.68070289438214	9.64101886801287	9.38585340091449	0.00563832599129782	0.968999391006483	0.988862740113602
Merged-chr18-10646687-4	chr18	10646550	10646750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134130, intron 8 of 8)	intron (NM_134130, intron 8 of 8)	28854.0	NM_009226	20641.0	Mm.603	NM_009226	ENSMUSG00000002477	Snrpd1	AA407109|AL023031|SMD1	small nuclear ribonucleoprotein D1	protein-coding	5.72654711222319	6.08638648308924	6.04386080993636	5.91710500342085	5.64309064808976	5.76974285402337	5.77288338346787	5.79820778949631	-0.338781628633541	0.178113923186616	0.47385347507328
Merged-chr6-71458520-2	chr6	71458420	71458620	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-17883.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	4.66458960508363	4.07602552921036	4.5910830115004	4.50802724351681	4.62707064542364	4.41948095050362	4.2235068455127	4.76584301884156	0.117795420176724	0.769379962877866	0.909742530773464
Merged-chr12-8682204-4	chr12	8682103	8682303	+	854.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030723, intron 1 of 20)	MTC|LTR|ERVL-MaLR	7522.0	NM_030723	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	4.08803849674432	4.28076924118214	4.18545390247625	3.80127272091057	4.22873752051516	4.77176782204358	4.41877709020648	4.0862578212349	0.782289103620231	0.0738183316312635	0.292677097447941
Merged-chr7-67524241-3	chr7	67524138	67524338	+	775.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028144, intron 8 of 8)	intron (NR_028144, intron 8 of 8)	120998.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	3.77294549425253	4.07905803006241	4.13049778068387	3.94015204150768	3.36574260647552	3.46941257929515	3.41037380734135	3.87022453841052	-1.38060891614144	0.00685553304192437	0.0599757979536543
Merged-chr17-78736700-4	chr17	78736589	78736789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011500)	promoter-TSS (NM_011500)	-129.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	9.53185793343038	9.56127872179107	9.5382486453183	9.67550982720955	9.56310622556683	9.77730177758625	9.82984172126225	9.45287814985455	0.10261162849464	0.492338318843943	0.763405929571789
Merged-chr10-24790015-2	chr10	24789915	24790115	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134005, intron 17 of 24)	intron (NM_134005, intron 17 of 24)	46180.0	NM_134005	209558.0	Mm.338425	NM_134005	ENSMUSG00000019989	Enpp3	AI876438|CD203c	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding	2.93582262086451	2.77670987175764	2.8181896256692	2.89127881562658	2.54058096541789	2.64907921366329	2.53850409620087	3.09287765719015	-0.620826964640816	0.369202995300478	0.673491314105063
Merged-chr7-25267508-4	chr7	25267417	25267617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302811)	promoter-TSS (NM_001302811)	-182.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	8.90547203595963	9.02714556727893	8.95453296647814	8.8773976259585	8.96120204587195	8.80485249134856	8.80969037297624	8.64485204094916	-0.158868846852315	0.285045393714495	0.596830300903192
Merged-chr16-49818136-1	chr16	49818036	49818236	+	715.0	f0_balb.idr	Intergenic	MER21B|LTR|ERVL	-37518.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	3.13631211628183	2.9253142759863	3.02192161718864	3.29707771516036	3.20109938238975	2.93288561600499	2.88718870874168	2.89461661081868	-0.47913985621052	0.437230916684076	0.725557644444268
Merged-chr5-115268456-3	chr5	115268350	115268550	+	870.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302449, intron 1 of 16)	intron (NM_001302449, intron 1 of 16)	4445.0	NM_001302448	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	3.29053149406493	3.34529286484934	3.72245500770879	4.04550155664606	3.19240656672417	3.46783246571985	3.34137917366294	3.41118694467283	-0.999039644637525	0.0824014550204466	0.311633450236458
Merged-chr14-31405906-4	chr14	31405792	31405992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	11785.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	5.83706403993891	5.64257542366071	5.94453742273642	6.11253834459104	5.34612384321956	5.40155414185758	5.29809281293889	5.61625424615933	-0.825729956977697	0.00300541482060688	0.0320339055878971
Merged-chr16-4894769-3	chr16	4894667	4894867	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	8667.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	4.43958442006254	4.52435271298382	4.80225156969992	4.55868287293714	4.38218217360169	4.1777039245769	4.42007572313546	4.15798104240604	-0.67519485903879	0.0787338027428638	0.303647473434478
Merged-chr1-138965211-3	chr1	138965105	138965305	+	957.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166501, intron 1 of 21)	intron (NM_001166501, intron 1 of 21)	1496.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	4.03154903009422	3.74135574607509	4.15707214084707	3.96011722631804	3.72957903909154	3.74085258177714	3.60968184656279	3.89112108846481	-0.669975564561626	0.144760742864739	0.423930146704668
Merged-chr3-59228909-4	chr3	59228813	59229013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 16 of 43)	intron (NM_177855, intron 16 of 43)	-18031.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	7.16406951814177	7.32239522495199	7.66436410740004	7.23407436529749	6.98128846354453	6.74068520339566	6.74145010712293	6.78622218712256	-0.731705478371763	0.000474728497242414	0.00740880056838839
Merged-chr8-75104501-4	chr8	75104336	75104536	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-5073.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	3.95610869536345	4.62982757374275	3.95670738327633	3.42762222452087	3.82175193715577	4.87269543003503	3.64718733860333	3.95428588121126	0.235095651723606	0.78115378966371	0.914785235722602
Merged-chr1-149833143-4	chr1	149833049	149833249	+	757.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 17 of 17)	intron (NM_008869, intron 17 of 17)	89290.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	4.05131592220763	4.12378831864586	4.15683569919601	4.19875234037188	4.55216196621769	4.47374322484928	4.69647209106275	4.50541869150608	0.985729564478341	0.00868507978332978	0.0713192540260303
Merged-chr10-24111417-5	chr10	24111333	24111533	+	741.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1899.0	NM_001010831	503558.0	Mm.300923	NM_001010831	ENSMUSG00000037424	Taar9	Gm231|taR-9	trace amine-associated receptor 9	protein-coding	3.11715216384066	3.4524556247308	3.17689020164941	3.23878058842369	3.05012607277232	2.79780230380504	3.22100228900384	3.2318654398891	-0.653039787531166	0.277080772826456	0.589231030012614
Merged-chr5-129016629-1	chr5	129016529	129016729	+	598.0	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3527.0	NM_009391	19384.0	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	2.95634908366383	2.84769073464744	2.83970796475431	2.96542490314896	2.52045399171736	2.67231438162815	2.70274107336418	2.95509539908391	-0.900936502258213	0.174555322806445	0.469049829139898
Merged-chr3-95662511-4	chr3	95662407	95662607	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008562, exon 3 of 3)	3' UTR (NM_008562, exon 3 of 3)	3786.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	4.41273578267269	4.14891281356596	4.2759620321498	4.67971975412373	4.52013829564647	4.81967791089028	4.20893207225402	4.61109518801319	0.323069364120342	0.429740436980127	0.720593996650296
Merged-chr4-33030499-4	chr4	33030389	33030589	+	948.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019586)	promoter-TSS (NM_019586)	834.0	NR_036602	100504166.0	Mm.426309	NR_036602	ENSMUSG00000085037	4933421O10Rik	-	RIKEN cDNA 4933421O10 gene	ncRNA	4.86658596318497	4.77696674956865	5.0024327297153	5.04576659113255	4.8953214924778	4.63065026618539	4.87898455994086	4.67247607872248	-0.310121207685938	0.352601547183834	0.659679630621423
Merged-chr15-3979579-4	chr15	3979466	3979666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134099)	promoter-TSS (NM_134099)	7.0	NM_134099	106052.0	Mm.234191	NM_134099	ENSMUSG00000022184	Fbxo4	1700096C12Rik|AI851261|AW494535|Fbx4	F-box protein 4	protein-coding	7.92416245652016	7.95103797432867	7.85099358355808	8.19131982542857	7.96315324367376	8.11746712933206	8.41457006603485	7.87601439468794	0.146832469959277	0.439282802152648	0.727189882655551
Merged-chr1-82799160-4	chr1	82799067	82799267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER102a|DNA|hAT-Charlie	-30711.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	6.15393468042052	6.03360905940242	6.01192616382929	5.98188889732892	5.63946733243727	6.14358031633687	6.02353233647764	6.24358992019679	-0.0366190388828421	0.88692542583539	0.957537765592859
Merged-chr13-51964397-6	chr13	51964296	51964496	+	781.486084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117721.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	3.64468912787155	3.58542061554269	3.82889030003468	3.33020352121546	3.34834760985788	3.48565996897786	3.35858261795135	3.42858457797185	-0.656771541819874	0.20966074776654	0.514168095492496
Merged-chr4-130800269-4	chr4	130800177	130800377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	7740.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	8.17325806392175	8.2775359624179	8.4249008205904	8.25162979711196	8.07752194464065	8.33364579455776	8.47777083932264	8.2409819983614	0.00334129141873142	0.984018029622324	0.994232698662932
Merged-chr5-30040036-4	chr5	30039922	30040122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26908.0	NM_031168	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	6.67491605324686	6.97027797284662	6.64573690649356	6.04299436027648	6.6867101755005	6.85235788793815	6.70033297927733	6.62554247632548	0.149491289177001	0.564672877064375	0.806890924206319
Merged-chr19-10862327-2	chr19	10862227	10862427	+	965.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_133804, intron 7 of 10)	intron (NM_133804, intron 7 of 10)	7452.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	2.78232790534692	2.78156231807188	2.72081687080422	2.30825592346448	2.44149934822917	2.62271953980691	2.77162789835529	2.84012764632414	0.0805690773685423	0.91089713024051	0.966904162861598
Merged-chr8-104115170-3	chr8	104115071	104115271	+	662.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 2 of 11)	MTE2b|LTR|ERVL-MaLR	-9298.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	3.22213533902922	3.06493231672206	3.28156537159027	3.44204410407996	3.27606442486083	3.33370840185055	3.37842630888105	3.3901776507155	0.257882582276742	0.633388324191624	0.844651176689519
Merged-chr9-64736874-5	chr9	64736687	64736887	+	999.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017382, intron 1 of 4)	intron (NM_017382, intron 1 of 4)	969.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	4.91522732465965	4.78975986750737	4.84475294266599	4.83781175850724	5.04887985729197	4.73704180361595	4.78494553630201	5.01253794588802	0.133859117335869	0.679984180950944	0.868593041138696
Merged-chr15-102625820-2	chr15	102625712	102625912	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001310070)	promoter-TSS (NM_001310070)	-348.0	NM_001310066	223922.0	Mm.208714	NM_146065	ENSMUSG00000099083	Atf7	1110012F10Rik|9430065F09Rik|AI549878|C130020M04Rik	activating transcription factor 7	protein-coding	6.8239304142333	6.57750597671131	6.26793151762472	6.84045653406466	6.75254971106482	6.4866812073943	6.460558566945	6.84645460974289	-0.00900993795311944	0.969670420105232	0.989068552980959
Merged-chr14-71209205-3	chr14	71209100	71209300	+	857.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42073.0	NR_046075	100043132.0	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	3.92888980855629	4.14826648945438	4.22168879931903	4.70660245787504	2.90705641814345	3.24702222025958	3.11564432879867	3.20360505790748	-5.70900422875788	1.6265424879927e-08	8.29933102170842e-07
Merged-chr5-43879579-4	chr5	43879446	43879646	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	RSINE1|SINE|B4	10737.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	5.06206610204775	4.57470004139421	4.89506201519644	4.54060879326138	5.01735247146827	5.0687350279226	5.09871333367494	4.92712291471464	0.527485812676586	0.119236400631482	0.38204933061581
Merged-chr10-128299951-4	chr10	128299847	128300047	+	925.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1863.0	NM_031252	83430.0	Mm.125482	NM_031252	ENSMUSG00000025383	Il23a	IL-23|p19	interleukin 23, alpha subunit p19	protein-coding	4.93492293395226	5.16519065457126	4.47916038735577	4.55177359934191	5.03781914010815	4.96377461309387	5.34682362774333	4.78433675355066	0.481011118722623	0.191931283213173	0.491437706673996
Merged-chr9-88436868-3	chr9	88436753	88436953	+	832.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359958, intron 1 of 28)	intron (NM_001359958, intron 1 of 28)	2098.0	NM_001359958	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	3.99623893330967	4.21691224077093	3.35459440910187	3.75995494386473	3.53935857802952	4.29724534574823	3.78135432034699	3.99434124253593	0.172720212798106	0.751979249676546	0.902329068825205
Merged-chr19-10291956-4	chr19	10291856	10292056	+	925.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	12921.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	4.53372450003328	4.4743603314341	4.06306171329249	4.32532161496759	4.59299400487326	4.85196641063988	4.47350537560715	4.31717047406939	0.481553278679618	0.216429801142813	0.522992151532601
Merged-chr1-178309047-3	chr1	178308928	178309128	+	867.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-10125.0	NM_025511	66359.0	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	3.56645432063228	3.73487938861496	4.07479277157413	3.11144844632079	3.91990910677621	3.91728080404186	3.9242407107903	4.02945066560224	0.822685647239394	0.12338777198692	0.389524913392336
Merged-chr10-68723278-4	chr10	68723196	68723396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177794)	promoter-TSS (NM_177794)	-450.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	6.79342015056601	6.7623682550676	7.15033901698905	6.74887610319697	7.24286384879008	6.98654464636833	7.15771889172972	7.06544786523664	0.356060126770623	0.0790024679425767	0.304143905332072
Merged-chr12-73594622-4	chr12	73594538	73594738	+	792.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	9842.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	4.32387347265946	4.47888940317109	4.94149483632377	4.55689953791839	4.28186188977805	4.5885070000009	4.35095535376834	4.17398009712904	-0.548808043489364	0.1668631048091	0.45832943340306
Merged-chr10-115315021-4	chr10	115314934	115315134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024454, intron 1 of 6)	intron (NM_024454, intron 1 of 6)	557.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	5.74463858237701	6.50365895690701	6.03203979521102	5.50258040653482	6.41787322162631	6.00130918325861	5.89014225475845	6.11034924766115	0.204218561184034	0.513534855430453	0.776548139505943
Merged-chr7-83568808-4	chr7	83568688	83568888	+	866.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16143.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	3.65686410138133	3.97956040330716	3.72179167741963	4.44463174416472	4.03574892258734	4.02269499709387	4.61344073882823	4.35758883984136	0.679081004830015	0.18769052936062	0.48610501726011
Merged-chr12-85913305-4	chr12	85913213	85913413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 19 of 32)	RSINE1|SINE|B4	88363.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	6.68671184308685	6.29986995494401	6.15447830464359	6.89647842944409	6.75958811458251	6.26619035814367	6.81587306434214	6.51270193029281	0.0774388714478024	0.771206166802781	0.91036734532567
Merged-chr9-73089781-4	chr9	73089675	73089875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301230, intron 6 of 6)	intron (NM_001301230, intron 6 of 6)	-12623.0	NM_025890	66991.0	Mm.471745	NM_025890	ENSMUSG00000092622	Khdc3	2410004A20Rik|AI467128|FILIA|OEEP48	KH domain containing 3, subcortical maternal complex member	protein-coding	7.30121711098283	6.84369025397397	7.22112810022728	7.49538258536784	6.68665227646048	6.94853469241376	6.75112968073291	6.82463970283558	-0.615000388510416	0.00504187807955591	0.0478246055203505
Merged-chr4-119883060-4	chr4	119882963	119883163	+	802.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	68385.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	4.67626424104686	4.02974893979988	4.70989296650123	4.47016317471974	4.28100356328602	3.99078045902897	4.22527871574821	4.24124522638752	-0.717010809728704	0.09121906048986	0.330057010299296
Merged-chr5-117377964-3	chr5	117377864	117378064	+	872.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021539, exon 9 of 9)	3' UTR (NM_021539, exon 9 of 9)	11059.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	3.4868581503399	3.48123937974948	3.32538535998113	3.54968280950529	3.62897792109348	3.2500950158035	3.06368354039238	3.07107581387619	-0.624576343271808	0.286954053017129	0.598607969863316
Merged-chr1-155558234-4	chr1	155558124	155558324	+	998.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028250, exon 1 of 8)	5' UTR (NM_028250, exon 1 of 8)	104.0	NM_028250	72482.0	Mm.288249	NM_026683	ENSMUSG00000033701	Acbd6	0610010G04Rik|2610100E10Rik	acyl-Coenzyme A binding domain containing 6	protein-coding	5.1951436968172	4.84440237794318	4.97395326686951	4.88658084189423	5.00822899181523	5.07690484228721	4.76545102408726	5.10207951672339	0.0433567688670296	0.892794136475654	0.95988450607517
Merged-chr5-118644438-2	chr5	118644336	118644536	+	782.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	83717.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	3.47803026994178	3.1528793171693	3.07751452447979	3.15451242073717	3.57522519711243	3.31704608693667	3.25259129858702	3.20366630495347	0.480885785293939	0.384393251989298	0.685951673034199
Merged-chr5-20470649-4	chr5	20470550	20470750	+	863.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 10 of 22)	RMER13A|LTR|ERVK	411474.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	3.92342009440855	3.58404338402358	3.82263764377408	4.03549755507128	3.94179339522758	4.1409303902426	3.80727516718602	3.96941683192352	0.289957833131474	0.524348880860408	0.782865729438594
Merged-chr11-48813845-4	chr11	48813759	48813959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145377, intron 1 of 5)	MIRb|SINE|MIR	3532.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	6.02509793971752	6.24489413763246	6.58517463364894	6.53381158107464	6.06063743366102	6.0357703016338	6.12402691095514	6.35835433647182	-0.343660517113617	0.167350083514245	0.458940920611074
Merged-chr19-25137732-3	chr19	25137652	25137852	+	737.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 23 of 47)	intron (NM_028785, intron 23 of 47)	-99223.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	3.314325794816	3.41629657770247	3.31471331620029	3.26135793041767	3.88856764728664	3.55261716801964	3.63579181137541	3.69768793089232	1.26018294745403	0.0100510705729757	0.0791956924341313
Merged-chr1-153748522-4	chr1	153748418	153748618	+	990.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011882)	promoter-TSS (NM_011882)	-908.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	4.47802049493844	3.64558238719227	4.17691386631496	4.03163426210044	3.7568736928424	4.01416509199679	3.87500483090264	4.08590564175273	-0.470693530426634	0.322513381864183	0.633993567259619
Merged-chr12-110503585-4	chr12	110503480	110503680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081457, intron 1 of 12)	ORR1B2|LTR|ERVL-MaLR	17841.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	7.43939401513649	7.52241701725485	7.09457614264276	7.42576758248087	7.1163686253971	6.91208268377947	7.14041269499778	6.94920241696719	-0.471933414715133	0.015722079106947	0.108388028948436
Merged-chr19-11786822-3	chr19	11786724	11786924	+	963.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 5 of 10)	intron (NM_011502, intron 5 of 10)	16409.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	3.55637952894215	3.60573792771525	3.34853349104923	3.82404502576327	2.82334613066598	3.21290415552377	3.02178153888255	3.09904561592372	-2.31243944265695	0.000249729971638765	0.00435786345508201
Merged-chr16-90747193-4	chr16	90747032	90747232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029844, intron 1 of 2)	intron (NM_029844, intron 1 of 2)	8808.0	NM_029844	77037.0	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|C21ORF61|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	4.40875881725958	3.96833644828912	4.53070355942976	4.01153336573016	4.60830335078177	4.45127992060158	4.43047727179732	4.63817140783524	0.710586229080545	0.076578419848629	0.299033099978361
Merged-chr1-64616789-4	chr1	64616641	64616841	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_025964, exon 1 of 3)	5' UTR (NM_025964, exon 1 of 3)	427.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	4.64941851585524	4.94632653447637	4.99684775575497	5.09064030730114	5.09094004124577	4.9524061645942	4.71383501905125	5.23773395405732	0.142531093347201	0.673307157511346	0.865717176504662
Merged-chr8-82846251-1	chr8	82846151	82846351	+	879.3333130000001	f0_balb.idr	Intergenic	Intergenic	-17105.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	3.95167908652083	3.74945730262251	3.65934564675025	4.04174505294932	3.68689660318987	3.39437052893595	3.64522016384004	3.81201261317915	-0.668866484260922	0.171883017312621	0.465124394984604
Merged-chr8-40861819-1	chr8	40861719	40861919	+	671.0	f0_c57.idr	promoter-TSS (NM_001044740)	promoter-TSS (NM_001044740)	-548.0	NM_007514	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	2.39097017490743	2.34380899155183	2.55076530026914	2.28928215792792	3.22528173698238	2.87319950841612	3.03646366363603	2.94071253405318	3.50107008321132	1.81069358045269e-06	5.98066628134765e-05
Merged-chr14-26645664-3	chr14	26645567	26645767	+	677.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 1 of 5)	B1_Mus1|SINE|Alu	7533.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	4.09674572533566	3.87718356999544	3.62724618986781	3.22310372636129	3.95717149533227	3.90975697439261	3.22710785299694	3.68062825868664	-0.0649053388320164	0.911860220326396	0.967058605013842
Merged-chr18-23989566-4	chr18	23989439	23989639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011755)	promoter-TSS (NM_011755)	-95.0	NM_011755	22694.0	Mm.290596	NM_011755	ENSMUSG00000063281	Zfp35	Zfp-35|Znf271|mszf13|mszf20-1|mszf28|mszf68	zinc finger protein 35	protein-coding	6.600693766373	6.86421481366313	6.85197783427903	6.78142116192997	6.57676423026397	6.76251207057944	6.74896733172631	6.89933579539758	-0.0502286249331604	0.806350807578585	0.925408958667777
Merged-chr6-146410027-4	chr6	146409922	146410122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 9 of 56)	B3|SINE|B2	92201.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	6.12303416337557	5.73510237017583	5.88306865846568	5.85290326766781	6.10383042397635	6.39420646667558	6.27679751386369	6.03736643045748	0.477603788592377	0.0506757462305532	0.23339651366127
Merged-chr12-59078649-4	chr12	59078552	59078752	+	848.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	11733.0	NM_008891	18949.0	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	3.72557683156317	3.54054080545436	3.7260945352557	3.69833466162603	3.87773188218633	3.67369709824557	3.76234995229913	4.0888666675913	0.549336281396835	0.23121622657327	0.540724853688999
Merged-chr1-130549906-2	chr1	130549806	130550006	+	835.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	79700.0	NM_009581	22789.0	Mm.4644	NM_009581	ENSMUSG00000042554	Zp3r	AV264399|SP56	zona pellucida 3 receptor	protein-coding	3.09604962925874	3.29734350449327	2.8876935516679	3.26609567016958	3.05182476163547	3.27159980854793	3.64380472714317	3.21781586880984	0.586578618745358	0.328190179714113	0.639603778492207
Merged-chr17-26677296-4	chr17	26677183	26677383	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025272, intron 1 of 3)	intron (NM_025272, intron 1 of 3)	887.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	5.81003880613429	5.67956916933254	5.61233947233092	5.64998284298077	5.94909343082036	5.93811963462605	5.2503853252231	5.66102302521942	0.0814862494319026	0.77561384627344	0.912398657432028
Merged-chr11-120631690-3	chr11	120631597	120631797	+	894.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010756, intron 1 of 2)	intron (NM_010756, intron 1 of 2)	1850.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	3.73414662905812	3.63650983482588	3.4509652616201	3.49749209276329	3.9709847675492	3.85396859761356	3.76857056847405	3.68057405178403	0.7578263996651	0.102743570559404	0.352063201683377
Merged-chr11-106664657-4	chr11	106664562	106664762	+	912.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 13 of 14)	intron (NM_001305158, intron 13 of 14)	50619.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	5.46815690826628	5.64291261450323	4.97812959236678	4.1611021303425	5.27414317049318	5.61630340786206	4.8377635068682	5.11600586492908	0.102596328712909	0.817525426744717	0.929907417738328
Merged-chr14-27182322-4	chr14	27182234	27182434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	38341.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	7.29392843590291	6.90531931882785	7.72687553220128	7.88283150091063	6.49067178729725	6.62905434466506	6.84422707578256	6.91591879340487	-1.07967511043938	3.16264650524026e-05	0.000759493979745265
Merged-chr5-33352551-4	chr5	33352448	33352648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021500, intron 1 of 8)	L1MB7|LINE|L1	16976.0	NM_021500	59003.0	Mm.138617	NM_021500	ENSMUSG00000079562	Maea	1110030D19Rik|EMP|Gid9	macrophage erythroblast attacher	protein-coding	5.07140807651937	4.81385872975606	5.19344278236141	4.94451616541257	4.88815549503399	5.14495519949741	4.80381520053821	4.96910684343921	-0.103852709726268	0.7477049499887	0.90068822490119
Merged-chr2-167358679-4	chr2	167358594	167358794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-9516.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	6.27710118861056	6.45673467206064	6.66556432153998	6.8249792781766	6.56222004229515	6.28845756472673	6.42840482724859	6.3501812446695	-0.247837726497927	0.291827319293995	0.604222955379233
Merged-chr5-20973255-2	chr5	20973155	20973355	+	727.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21433.0	NM_001080977	242860.0	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	3.22049738053821	3.21768548983721	3.09280368481332	3.13374906664501	3.39125706729097	3.45159901246828	3.43018485021497	3.44265185780146	0.952437504238739	0.0644134585007729	0.269651565172412
Merged-chr7-67462732-3	chr7	67462624	67462824	+	773.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89866.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	3.1490833136764	3.04232440333353	3.09038781164504	3.11865918805756	3.12272170098827	3.13693585431333	3.13779894789812	3.20418736423744	0.191864131245574	0.725335735423783	0.89087143567597
Merged-chr6-97149906-4	chr6	97149802	97150002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-1019.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	6.91208503194677	6.9673801586691	7.21331323872225	7.44110207708933	6.86130674503667	6.91716692488061	6.85098224216289	7.29078416772079	-0.237542552277783	0.289887363197174	0.601945471019989
Merged-chr9-44552391-4	chr9	44552287	44552487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-25966.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	5.48483895319733	5.60203419535226	5.54631994913032	5.18543301634517	6.18680588411001	6.41029248119351	6.23839807726398	5.83217449152981	1.1931864253607	1.06155942238082e-05	0.000290754356280243
Merged-chr1-107506401-3	chr1	107506288	107506488	+	764.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5035.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	4.04592212982239	3.99772410649893	3.90299958694156	4.1377452659878	3.6293151856587	3.74009480346118	3.98314307817034	4.13129271349301	-0.417247935353237	0.357720011523772	0.663837540417421
Merged-chr11-98414255-3	chr11	98414154	98414354	+	845.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003817, intron 1 of 26)	intron (NM_001003817, intron 1 of 26)	1770.0	NM_001003817	13866.0	Mm.290822	NM_001003817	ENSMUSG00000062312	Erbb2	Erbb-2|HER-2|HER2|Neu|c-erbB2|c-neu|l11Jus8|mKIAA3023	erb-b2 receptor tyrosine kinase 2	protein-coding	3.1955855547289	3.45164975211454	3.41661861574132	3.45038356815967	3.36537660020575	3.03723020548701	2.99347468006668	3.19441133539546	-0.82543830670229	0.152634951145449	0.436970727087718
Merged-chr17-56831208-4	chr17	56831110	56831310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027787)	promoter-TSS (NM_027787)	-202.0	NM_027787	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	9.02897357190533	9.07656671159117	8.88249447246106	8.9071007956423	8.85190767266849	8.86586567766756	9.0138146645083	8.59460492289134	-0.167516772335928	0.285799212537594	0.597477154288458
Merged-chr1-162649421-3	chr1	162649314	162649514	+	837.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010865, exon 3 of 3)	3' UTR (NM_010865, exon 3 of 3)	8805.0	NM_001177581	100038657.0	Mm.416999	NM_001177581	ENSMUSG00000091060	Myocos	7420461P10Rik	myocilin opposite strand	protein-coding	3.89904999297316	3.60293970225605	3.81104014528682	4.45215449647064	2.93635640070531	3.1373191836108	3.23553304410263	3.09820836028269	-3.57483053079138	4.47394076827205e-07	1.674293532833e-05
Merged-chr1-127222300-4	chr1	127222255	127222455	+	879.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	17369.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	4.12877370083635	4.09807947798025	4.65705218807545	4.3613645971097	4.39278181490861	4.20326642810068	4.41978669476499	4.12696047533517	-0.0818214177276543	0.842130165421801	0.940110307562683
Merged-chr10-127428172-3	chr10	127428069	127428269	+	641.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359246, intron 1 of 23)	intron (NM_001359246, intron 1 of 23)	7302.0	NM_001359243	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	3.11682451555412	3.25296110769183	3.117199694562	3.27838096345972	3.39310752187094	3.02964314626497	2.91535048332598	3.1742782374908	-0.182347854237631	0.7561472272183	0.904159100355911
Merged-chr18-38247416-3	chr18	38247339	38247539	+	984.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015475, intron 1 of 3)	Lx8|LINE|L1	2759.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	3.05624438154354	3.18209464321297	3.30011007039338	3.46534504623421	3.0027894745226	3.23216120407005	3.34085470086876	3.4045621375579	-0.0751603998549916	0.895786161310924	0.960967629364294
Merged-chr1-95667677-4	chr1	95667577	95667777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009183)	promoter-TSS (NM_009183)	-83.0	NM_001159745	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	7.66832871235578	7.46854459406855	7.53590561687674	7.9978839906224	7.92184960858386	7.68510034363976	8.14352957288972	7.56778415476498	0.204284396455283	0.336232691606608	0.646323334572005
Merged-chr5-135168846-4	chr5	135168746	135168946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009745, intron 1 of 5)	CpG	474.0	NM_009745	12054.0	Mm.405834	NM_009745	ENSMUSG00000029681	Bcl7b	-	B cell CLL/lymphoma 7B	protein-coding	8.55219833705226	8.4939387756166	8.20591392111971	8.30699596430827	8.55522746633371	8.58808847274346	8.72377179908613	8.1943398542464	0.170050107602417	0.342096283203084	0.651084026125481
Merged-chr14-51062973-4	chr14	51062860	51063060	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5718.0	NM_001011875	497106.0	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	4.59470262546344	4.49614243194197	4.66928787726685	4.71842411855517	4.68301965210848	4.21544334749096	4.17997873154485	4.38674379861384	-0.515649645094965	0.185511894368923	0.483497702336656
Merged-chr11-117168835-4	chr11	117168742	117168942	+	987.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-30819.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	5.82814288845342	5.53311385450515	5.25012719981893	5.6523042179081	5.58129998614731	5.13462696019323	5.38002074367887	5.4886666047072	-0.294111414246744	0.322700418824387	0.634183525539111
Merged-chr6-140614114-4	chr6	140614008	140614208	+	991.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8555.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	5.23715726897041	6.02625458344749	5.64385636074232	4.53092802697177	5.81824093289732	6.0640393547983	5.34041965349776	5.05242198454414	0.2348952943929	0.705518042002932	0.881759346486013
Merged-chr2-24935316-4	chr2	24935196	24935396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162485)	promoter-TSS (NM_001162485)	-15.0	NM_178408	215705.0	Mm.45275	NM_178408	ENSMUSG00000026972	Arrdc1	AI957342|BC004091	arrestin domain containing 1	protein-coding	8.19450990356335	8.29829674927635	8.03856853791303	8.01654188891169	8.13081496315724	8.07421306165787	8.25894075565341	8.05972033573667	-0.00631344311152058	0.96915749935353	0.988873837789174
Merged-chr8-47906305-3	chr8	47906198	47906398	+	723.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 2 of 22)	intron (NM_133791, intron 2 of 22)	81816.0	NM_029383	75677.0	Mm.390033	NM_029383	ENSMUSG00000038064	Cldn22	2210404A22Rik|5330431C14Rik|9530051B05Rik	claudin 22	protein-coding	3.45977655923648	3.57029866924825	3.46027851193326	3.4618035850323	3.08799694035518	3.07747807208882	3.39419655653698	3.03947279038757	-1.25495043170264	0.0256129170330047	0.150994021988756
Merged-chr13-55211066-4	chr13	55210967	55211167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008739, intron 1 of 22)	CpG	1285.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	6.0205517855805	6.15245190259852	6.49182381573439	5.79767095360147	6.10649597333099	6.49967750793934	6.09924888654816	6.71561040099143	0.376924829973904	0.177048058926951	0.472289587325445
Merged-chr7-81859093-4	chr7	81859011	81859211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_111910, exon 1 of 8)	non-coding (NR_111910, exon 1 of 8)	110.0	NM_145375	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	5.90044894279217	5.64103013126735	5.6498332254889	5.59865477635741	5.213503373228	5.575438575477	5.69452395453198	5.512461865556	-0.333820995390989	0.23447344637751	0.544397215634433
Merged-chr12-69893139-4	chr12	69893039	69893239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201519)	promoter-TSS (NM_201519)	24.0	NM_201519	399510.0	Mm.291936	NM_201519	ENSMUSG00000034761	Map4k5	4432415E19Rik|GCKR|KHS|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding	7.07543088921211	6.87210906270483	6.93070044866114	7.04583946729195	6.79229742883977	6.7360873404156	7.11858746490787	6.55326566203443	-0.235672179504525	0.265525111937366	0.577199240856028
Merged-chr10-75282856-4	chr10	75282741	75282941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-34036.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	7.08376981550678	7.10947843315749	7.4340102822431	7.46668673557633	6.97923567385735	6.86588056759574	7.26121458866113	7.47413615444864	-0.171724283938789	0.437500951701899	0.725725477538789
Merged-chr7-122021132-4	chr7	122021004	122021204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028758)	promoter-TSS (NM_028758)	94.0	NM_028758	74105.0	Mm.29619	NM_028758	ENSMUSG00000030872	Gga2	1200007E24Rik|mKIAA1080	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding	6.2195544443568	5.92515855399611	5.87657574354364	5.72377248799062	5.83355737353646	5.90526929295749	5.91424621277022	5.89545237428387	-0.0773260984023698	0.762032246057503	0.906776947564005
Merged-chr9-42944744-6	chr9	42944660	42944860	+	975.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175481)	promoter-TSS (NM_175481)	-389.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	3.47366656137027	3.92756107274747	3.75635229703619	3.71121248223049	3.62202846844057	3.71133740123689	3.78998786601981	3.8516750566127	0.0421811650930472	0.928671038998321	0.974091893381396
Merged-chr3-136742898-4	chr3	136742796	136742996	+	990.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	72830.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	5.17493572076143	5.01926428033686	4.83823081158155	4.88226742114654	5.13893715097691	5.05064865541491	4.92551738668993	4.98083011874793	0.107052135879659	0.733907881138445	0.894686779360896
Merged-chr9-62894303-1	chr9	62894203	62894403	+	636.0	f0_balb.idr	intron (NM_019663, intron 9 of 13)	intron (NM_019663, intron 9 of 13)	-32279.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	3.19684053265796	3.2160209258919	3.64603821186865	3.46163907340331	3.43022688050516	3.37525486309928	3.48127499131729	3.69015248683362	0.345891423554044	0.513427956324013	0.77646733267772
Merged-chr1-134151892-4	chr1	134151792	134151992	+	815.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001284524)	TTS (NM_001284524)	-30512.0	NM_007695	12654.0	Mm.38274	NM_007695	ENSMUSG00000064246	Chil1	AW208766|Brp39|Chi3l1|Gp39	chitinase-like 1	protein-coding	3.46051243808763	4.01297971440333	3.70254999046751	3.7074967329129	3.75372381086204	3.92914070059872	3.97960512162553	3.90430845423574	0.439450171444223	0.347869992768521	0.655739918695498
Merged-chr7-44405792-4	chr7	44405678	44405878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21652.0	NM_016663	20981.0	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	8.05107114479977	8.137676274698	8.08440130145925	7.87914591601305	7.81457404116781	8.10739815052749	7.98120167529839	7.88828103598578	-0.113683851052965	0.498505718584831	0.767684354365973
Merged-chr16-92428329-3	chr16	92428253	92428453	+	917.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-28275.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	3.60084918568453	3.92164903879955	3.49846829542054	3.68267798844796	3.20501867278154	3.16857771504784	3.25329445507015	3.19728742168742	-1.75342150754518	0.00159542503355162	0.0196200342887303
Merged-chr1-191397229-4	chr1	191397126	191397326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144880)	promoter-TSS (NM_144880)	-185.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	8.77517659070441	8.84566342606927	8.71229438202606	8.8576849989594	8.93103078251132	8.93333408869058	9.2844630997937	8.96038681896041	0.291203753674221	0.0612691361072302	0.261910746440246
Merged-chr4-154160223-2	chr4	154160123	154160323	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026388, exon 2 of 4)	exon (NM_026388, exon 2 of 4)	461.0	NR_151647	67808.0	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	3.94318086078575	3.65142454759247	4.16726682838582	3.94084178565243	3.9839220075068	3.85173185878776	3.71779447235808	4.20478340714198	0.050353791038279	0.912799067410559	0.967354887470906
Merged-chr12-75595565-5	chr12	75595505	75595705	+	878.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012024, intron 1 of 13)	CpG	595.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	3.33755237266847	3.33058134491743	3.33796218138185	3.37779281447578	3.49926412898187	3.32277594111493	3.68920852005565	3.74827216018844	0.755635709633117	0.135221525086364	0.409362578007924
Merged-chr7-27537442-4	chr7	27537354	27537554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 10 of 13)	intron (NM_001317355, intron 10 of 13)	14193.0	NM_001033315	233020.0	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	6.63396075650527	6.78598336623118	6.65055706470522	6.82949367932373	6.70416339098977	6.18635270327643	6.64679445500258	6.88244553051024	-0.141974395739475	0.533873918338221	0.789042708189764
Merged-chr15-76239260-4	chr15	76239172	76239372	+	941.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163576, intron 8 of 9)	intron (NM_001163576, intron 8 of 9)	4168.0	NM_001163576	671535.0	Mm.373750	NM_001163575	ENSMUSG00000063268	Parp10	-	poly (ADP-ribose) polymerase family, member 10	protein-coding	4.70888698720209	5.02565402046594	4.70963595362815	4.80870127036914	5.14075494006316	5.03984313542816	4.6461852384889	5.21343737632812	0.414434983405424	0.221400831812999	0.529463056908312
Merged-chr7-139303462-4	chr7	139303369	139303569	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54987.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	4.21732564605423	4.35400337502405	3.92234591620462	4.01219686103958	3.73560965194017	4.43173436745298	4.32326074556347	4.12416694607881	0.0950296788435504	0.833656567428453	0.936446056449671
Merged-chr12-32191152-4	chr12	32191055	32191255	+	952.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020272, intron 10 of 10)	intron (NM_020272, intron 10 of 10)	17183.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	4.58919670531054	4.31040009961611	4.67736183959893	4.41176944448857	5.20106917728221	5.33615311585593	5.16711644916862	5.16132803135655	1.46030709530811	6.63942934705706e-06	0.000190944622825929
Merged-chr11-118163863-4	chr11	118163772	118163972	+	929.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001112699)	TTS (NM_001112699)	-34653.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	5.20820658362904	4.34033351248946	4.7738091111168	4.72882378085555	4.41935065208356	4.75029176758917	4.85685172828252	4.84276880118828	-0.146111867060805	0.707909390291972	0.882657741545225
Merged-chr7-97082441-4	chr7	97082340	97082540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	689.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	5.34795737815321	5.39794588428808	5.50124787842854	5.84051960246581	5.63859967122337	5.70514005389697	5.73093464683811	5.8679253740585	0.290637303132889	0.306239146099364	0.618710686049407
Merged-chr7-3704200-7	chr7	3704165	3704365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029767, intron 1 of 4)	CpG	224.0	NM_029767	76846.0	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	5.40630326602704	5.97042212149271	5.80341414628826	5.06925810713658	5.88397576851219	5.72933570946062	5.46934599098278	5.62976486645093	0.15643762735406	0.630978138802165	0.843124386449892
Merged-chr15-53104192-4	chr15	53104089	53104289	+	989.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 3 of 10)	intron (NM_010162, intron 3 of 10)	241994.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	5.28194408648812	5.46314090203281	6.10439928026779	5.95872136698944	5.58586475116042	5.66174288853721	6.32660993677184	6.00189089472291	0.279434544751013	0.396118638855704	0.695056962841936
Merged-chr16-43448724-4	chr16	43448633	43448833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	-28537.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	6.67376791670122	6.3004731437326	7.00835502554016	6.98570341110362	6.48727673215839	6.59202987410577	6.58083553129849	5.79621823038028	-0.539641272116332	0.0542584507750462	0.243261914848246
Merged-chr6-143751412-4	chr6	143751298	143751498	+	774.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100110.0	NR_045732	73425.0	Mm.417844	NR_045732	ENSMUSG00000086887	1700060C16Rik	-	RIKEN cDNA 1700060C16 gene	ncRNA	4.08690686519718	4.08127152169499	4.03999303151372	4.45377131524298	4.13988986722827	3.69974555522524	3.87078576537226	4.25884023124908	-0.452672585804868	0.323355235831927	0.634804377948553
Merged-chr11-5737330-4	chr11	5737247	5737447	+	808.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	MER44B|DNA|TcMar-Tigger	3829.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	3.58796560354595	4.20231950622618	3.92190858134992	3.67324937864734	4.30890313450247	3.9410543507611	3.85575351434865	3.70714223229478	0.318818953141399	0.518476061756343	0.77953711493731
Merged-chr1-65112662-1	chr1	65112562	65112762	+	1000.0	f0_c57.idr	intron (NM_175293, intron 5 of 7)	intron (NM_175293, intron 5 of 7)	-9299.0	NM_007774	12964.0	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	4.63926341342414	4.93830545468933	4.80661450789754	4.63776262890264	5.12808651404695	5.05723175966086	5.02989541933804	5.31167453309096	0.755682152923769	0.0179131152408335	0.118805269625916
Merged-chr11-6188015-3	chr11	6187951	6188151	+	970.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173748, intron 2 of 5)	intron (NM_173748, intron 2 of 5)	12400.0	NM_173748	209586.0	Mm.25321	NM_173748	ENSMUSG00000053838	Nudcd3	AI427847|BC024322|mKIAA1068	NudC domain containing 3	protein-coding	3.3701320720193	4.10579821041625	3.49184980620646	3.62048681582114	3.58596600294771	3.54782166964078	3.42033008439841	3.54664326110722	-0.484894452033488	0.361447547569616	0.666734221172781
Merged-chr13-51839448-4	chr13	51839354	51839554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7221.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	5.61734857824534	5.56012119714565	5.53682270127014	5.89821081129859	5.68015069407737	5.50206780671321	5.89053411444743	5.47562165679887	-0.0468049598906639	0.867103755987309	0.950262944533036
Merged-chr12-40470531-4	chr12	40470455	40470655	+	945.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	24502.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.66432046537843	4.4969973739159	4.19268702904574	4.40148994844411	5.39921072748093	4.62928252068205	4.82585206698162	4.84632624571357	1.10159567550351	0.00411678566782473	0.0409715725741186
Merged-chr3-58415291-4	chr3	58415187	58415387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081229, exon 1 of 4)	5' UTR (NM_001081229, exon 1 of 4)	567.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	6.6657152688551	6.66548314865112	7.27230286465478	7.18145424541453	6.99923059745451	6.95294460925386	7.14287672131292	6.91113944838719	0.0277603671026519	0.903284783563483	0.964216307632836
Merged-chr6-97397171-4	chr6	97397075	97397275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	62111.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	5.92254886698069	5.90119789281899	5.85671429516396	5.94314001073616	5.58991880813322	5.8867447951526	5.63034903460487	5.70722698824551	-0.34223271993872	0.1708263572329	0.464004933466155
Merged-chr1-152597089-4	chr1	152596993	152597193	+	971.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	28124.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.87192300434246	5.33978955417526	5.03820564229516	5.32358904884886	4.83955535738881	5.06658270307392	4.73786022881264	5.23342680594595	-0.830809261261462	0.0171985666082071	0.115542876130776
Merged-chr11-4294681-3	chr11	4294592	4294792	+	776.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27896.0	NM_001039537	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	3.86669785508719	4.34955289061201	4.13534099679113	3.81551829306431	3.40147579892641	3.58203986821571	3.57851576278442	3.81433337357344	-1.37853876315136	0.00624612358560452	0.0558955029796007
Merged-chr12-81746612-4	chr12	81746556	81746756	+	850.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001174107, intron 2 of 10)	L1MB8|LINE|L1	34514.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	3.63367942171987	3.59783940107886	3.63416703944056	3.88389742692434	3.44958467542603	3.8066319334664	3.72466700652613	3.92634323687702	0.0820154716630895	0.866856580511561	0.950138351466468
Merged-chr13-58388096-4	chr13	58387974	58388174	+	869.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2849.0	NM_027335	70153.0	Mm.296610	NM_027335	ENSMUSG00000021550	2210016F16Rik	-	RIKEN cDNA 2210016F16 gene	protein-coding	3.97723430556937	4.17456988727399	3.92630275379283	3.90291298900127	4.31326679383071	4.24570207567296	3.96133244614868	3.97550081781599	0.379412383436322	0.370209193012692	0.674357518313601
Merged-chr8-92840011-4	chr8	92839912	92840112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008610, intron 8 of 12)	intron (NM_008610, intron 8 of 12)	12715.0	NM_008610	17390.0	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	6.53425027643363	6.44079774275385	6.58349723327102	6.7325292399455	6.64530335603452	6.3790139579312	6.53416891143553	6.57880514054136	-0.0630729673982814	0.768304333584627	0.909356419531329
Merged-chr7-31150689-1	chr7	31150589	31150789	+	1000.0	f0_balb.idr	intron (NR_153431, intron 1 of 18)	CpG	482.0	NM_027898	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	5.2911578188221	5.61388299736926	4.82362649342142	4.82621139923795	5.24970377319447	5.18643923516735	4.8009485798539	4.64856893420059	-0.336406786091976	0.380936694686476	0.683299556249399
Merged-chr1-21166461-3	chr1	21166360	21166560	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52115.0	NM_001290679	75712.0	Mm.304763	NM_029398	ENSMUSG00000025933	Tmem14a	5730496E24Rik|C85783|PTD011	transmembrane protein 14A	protein-coding	5.50013429163914	5.50751363370084	5.79516633349028	5.78184382468671	3.96916685895139	4.04782489489435	4.28571033412236	4.51683070554951	-3.14032518370379	2.64072998285105e-15	4.50754243283826e-13
Merged-chr17-29414778-4	chr17	29414677	29414877	+	905.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD3|LINE|L1	53863.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	4.53391823452958	4.92991064289362	4.24230632461284	4.23631189638103	5.0418381398347	4.7543568624722	5.19960661395618	4.44129660339754	0.797291083218877	0.0523665878355767	0.238376362497258
Merged-chr15-58567621-3	chr15	58567519	58567719	+	839.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	152151.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	3.49364125972362	3.47191142228048	3.37404668135114	3.68787689967785	3.76362257579241	3.72036208665003	3.58963626103988	3.6020026902078	0.463829497162778	0.344710704354609	0.653182920489211
Merged-chr4-137594801-4	chr4	137594695	137594895	+	947.0125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355588, intron 1 of 26)	intron (NM_001355588, intron 1 of 26)	623.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	4.33501505818106	4.1580218487321	4.0328448189716	4.42500603626705	4.47053794271307	4.46473930281503	4.55927169796896	4.78294222054443	0.716685060710383	0.066451018404753	0.27477152544626
Merged-chr12-75684202-6	chr12	75684087	75684287	+	901.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-14650.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	4.06638231293618	4.23772959931084	4.72948388982062	3.59585574132976	3.70751932208397	3.73452498144254	4.14103725356455	4.15755389128564	-0.688932431344229	0.189358034023761	0.488240753999997
Merged-chr10-20725128-4	chr10	20725050	20725250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013875)	promoter-TSS (NM_013875)	-72.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	7.54774519789864	7.5620406237694	7.43729915556311	7.46131502590751	7.53663218277849	7.5444299426543	7.48494729468201	7.49850364324451	0.0207135754308534	0.901266204857836	0.963342914941175
Merged-chr10-45019620-4	chr10	45019518	45019718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47596.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	7.56334369662213	7.6994290420933	7.66006530450816	7.88331187724705	7.71592328407145	7.55804139112046	7.60582888230651	7.4463368534204	-0.166532006894281	0.349454252604989	0.656994301272332
Merged-chr10-11319746-3	chr10	11319635	11319835	+	875.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23710.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	3.66716560332196	3.98760895490271	4.5244044333924	4.41124451846176	3.82721995127837	3.51882129251378	3.76896785337931	3.72506086946876	-1.32673080216078	0.00978413309535316	0.0776826335297426
Merged-chr15-51955824-4	chr15	51955731	51955931	+	692.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35929.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	3.66261761990013	3.3776183229112	3.71524235560725	3.64576396837339	3.69537935219757	3.54657118864279	3.69981203435843	4.0272321556866	0.447915632839471	0.356831444832017	0.66317411451208
Merged-chr7-5016246-4	chr7	5016158	5016358	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025324, intron 1 of 1)	MIRb|SINE|MIR	750.0	NM_025324	66056.0	Mm.19974	NM_025324	ENSMUSG00000051184	Zfp524	0610012F07Rik|2300009P13Rik|Znf524	zinc finger protein 524	protein-coding	5.29022326296619	5.63054977928488	4.64758847554601	4.57518834385327	5.37793326293107	5.07715321271379	4.67142799261106	5.13861162950922	-0.0304343283030466	0.941501080919758	0.978922922650201
Merged-chr18-39490900-4	chr18	39490795	39490995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3650.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	7.40713987524538	7.74895916469501	7.77661001679409	7.60365702292899	7.74777125171798	7.46878019642857	7.5773453135263	7.70907775562005	-0.00859922588482408	0.962147093427879	0.986416651799321
Merged-chr9-121305653-4	chr9	121305535	121305735	+	752.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	8133.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	3.63443885909686	3.60578703433804	3.44698800826146	3.59459235416766	3.94682122884843	4.16024744259162	4.21244633177877	3.74498652568344	1.29822716944025	0.00509029032528686	0.0481234925041298
Merged-chr13-100203575-4	chr13	100203456	100203656	+	993.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1434.0	NM_010872	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	5.36984214610112	5.93889832298621	5.54943316078661	5.04146157298935	5.71428633917613	6.30982641878731	5.34394847282277	5.62621886153137	0.475013169737668	0.176721737365807	0.471902210906975
Merged-chr10-81427158-3	chr10	81427091	81427291	+	934.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008688)	promoter-TSS (NM_008688)	-18.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	4.07481292325502	3.70152435643573	3.80211272391433	3.66983403834635	3.82659300689367	3.86971278905455	3.73515521748049	3.69418875821811	-0.078573392295631	0.864676635623728	0.949239924844402
Merged-chr17-45554601-4	chr17	45554500	45554700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1100.0	NM_008690	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	5.3216677971911	5.15501274069471	5.2321882389026	4.72812677687159	5.51583617759081	5.20699914275862	5.37967201918288	5.34758622113502	0.492864245074738	0.121826267890763	0.386722201409118
Merged-chr18-65580932-8	chr18	65580867	65581067	+	988.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207255, intron 1 of 5)	CpG	737.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	4.25409786297616	4.63307185046916	4.6277018176357	4.5058236982456	4.30974991549126	4.33252791927031	4.3283401174734	4.38878690734565	-0.412323251891918	0.272722246285507	0.584138684652025
Merged-chr2-23088642-4	chr2	23088516	23088716	+	832.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355638, intron 7 of 13)	intron (NM_001355638, intron 7 of 13)	19544.0	NM_001355638	74159.0	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	4.24367507730701	4.06177862361454	3.58805427335105	4.09244458251224	4.25214976207802	3.89117231051195	3.81220446396269	3.97950822952437	-0.0470298249558418	0.920507509492947	0.970515472884726
Merged-chr3-33801065-4	chr3	33800988	33801188	+	854.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290502, intron 2 of 9)	intron (NM_001290502, intron 2 of 9)	905.0	NM_001290500	67120.0	Mm.275710	NM_025978	ENSMUSG00000027677	Ttc14	2700016E08Rik|4930434D01Rik|4931403I22Rik|4933402I15Rik|AI662468|AU014779|AW561908|cI-44|mKIAA1980	tetratricopeptide repeat domain 14	protein-coding	3.85386066420718	3.41042833352144	3.75263489095815	4.05719880191092	3.6352878697619	3.81746153383055	3.97527812396085	3.90006876686229	0.0933428508510568	0.850806449123303	0.943736204490378
Merged-chr15-6415543-3	chr15	6415463	6415663	+	702.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	28815.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	3.33485211798452	3.47500686542559	3.22038236253691	3.52528202784897	3.30355377901616	3.26859739584664	3.20915718118201	3.02535961475883	-0.711197740172295	0.199562265312088	0.501474545095065
Merged-chr12-102282301-4	chr12	102282219	102282419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177620)	promoter-TSS (NM_177620)	-755.0	NM_177620	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	6.61006385564231	7.15063518932285	7.11293558977948	7.16013459020183	6.78136909674852	6.78911793260508	6.73331888034583	6.84822215945388	-0.347940438390469	0.102601532132649	0.351887561707134
Merged-chr8-95335910-4	chr8	95335790	95335990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133954, intron 2 of 6)	intron (NM_133954, intron 2 of 6)	3606.0	NM_133954	101985.0	Mm.29069	NM_133954	ENSMUSG00000031792	Usb1	AA960436	U6 snRNA biogenesis 1	protein-coding	5.35769361108991	5.84432751491722	5.15327808151725	5.67588430386326	5.85733420933001	5.81525538465867	5.45198932587217	5.47556274909608	0.202421829838969	0.509420755590666	0.774010288005379
Merged-chr18-24530259-4	chr18	24530134	24530334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144861)	promoter-TSS (NM_144861)	-30.0	NM_001360807	225283.0	Mm.28427	NM_144861	ENSMUSG00000040446	Rprd1a	C77387|mKIAA4077	regulation of nuclear pre-mRNA domain containing 1A	protein-coding	8.2950866120475	8.29960280776117	8.10450545640709	8.42501466169601	8.29835888898175	8.10857163095955	8.37896047480982	8.09913081744066	-0.0794134511999891	0.632606703132179	0.844017104446961
Merged-chr19-10502763-4	chr19	10502681	10502881	+	806.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025333, exon 4 of 4)	3' UTR (NM_025333, exon 4 of 4)	-19884.0	NM_133689	67752.0	Mm.25939	NM_133689	ENSMUSG00000035179	Ppp1r32	4930579J09Rik|AU015816|IIIG9|IIIG9L|IIIG9S	protein phosphatase 1, regulatory subunit 32	protein-coding	3.44163892874139	3.47846299602481	3.55796082152559	3.42766196222984	3.79634071843955	3.49466007577651	3.74615573574597	3.85126129355046	0.820136885633934	0.0844120841249612	0.316131232844722
Merged-chr9-87043444-4	chr9	87043363	87043563	+	636.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359962, intron 8 of 14)	intron (NM_001359962, intron 8 of 14)	21434.0	NM_001359962	266690.0	Mm.30166	NM_024195	ENSMUSG00000032872	Cyb5r4	2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r	cytochrome b5 reductase 4	protein-coding	3.41899830794121	3.86884832465989	3.76829362980137	3.55465448930453	3.79581522176766	3.78056572241642	3.75263396382726	4.04014893084882	0.551097331353553	0.243866900355308	0.554929734667214
Merged-chr2-125795315-2	chr2	125795220	125795420	+	629.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-12450.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	2.76598288786745	2.69835905280601	2.9296214189323	2.43939131774132	3.954083373296	3.77139178273093	3.53140221777597	3.54631360475782	4.86199434109855	1.34144892537871e-11	1.18759941616332e-09
Merged-chr7-122135278-3	chr7	122135169	122135369	+	750.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021608, intron 3 of 5)	intron (NM_021608, intron 3 of 5)	2228.0	NM_021608	59288.0	Mm.478285	NM_021608	ENSMUSG00000030868	Dctn5	4930427E12Rik|C78178|b2b315Clo	dynactin 5	protein-coding	3.40426430892141	3.35513373861307	3.46497354514295	3.67917897280185	3.93586664537258	3.63766188709107	3.76409258536547	3.77805464317911	0.909103236321421	0.0682532555597637	0.278934287046473
Merged-chr4-26347435-4	chr4	26347336	26347536	+	831.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172865)	promoter-TSS (NM_172865)	-784.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	4.08971842004772	5.00098920946849	4.19271748542294	3.87958503620179	4.5445691253597	4.46339366314326	4.39780422436828	4.03372825264439	0.0112004444392706	0.981692690008598	0.993486848211705
Merged-chr4-130892468-2	chr4	130892368	130892568	+	961.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20866.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	3.15382325210947	2.99155859231815	3.09761681035485	2.97988363105732	3.04273853668587	3.01812290698527	3.08605264206392	3.09599958727886	0.0391091473366169	0.94464803683599	0.980106371692172
Merged-chr9-57652558-4	chr9	57652449	57652649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 1 of 14)	intron (NM_001304761, intron 1 of 14)	1082.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	7.28122934535736	7.20080866339633	7.65576570657184	7.73334753970817	7.36619298016892	7.0087193878688	7.4643336380841	7.72105281538603	-0.105149647009801	0.643966017409116	0.850046908802106
Merged-chr10-25331914-4	chr10	25331817	25332017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27881.0	NM_001358754	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	8.1081665057177	8.12606810059534	8.20190287511054	8.33120025521438	8.25341538134194	8.36164478854918	8.33961809780945	7.77718834070342	0.00684585299312884	0.970559122561996	0.989436241028349
Merged-chr2-145830213-4	chr2	145830098	145830298	+	869.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	44082.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	4.41571211519423	4.23325963810582	4.98979692458539	4.9050895050598	4.27120802997231	4.50140238983695	4.1513715569681	4.86579390129535	-0.451629265301165	0.302080835373258	0.614372586463031
Merged-chr8-14813512-4	chr8	14813421	14813621	+	930.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 9 of 15)	intron (NM_172910, intron 9 of 15)	-75015.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	4.70334292136814	4.70512326132376	4.85604494402644	5.40871469350823	4.64256353598866	4.75488765900282	4.86776555602141	4.66013917761368	-0.503301712082954	0.182234802055295	0.47878218634963
Merged-chr2-120629022-4	chr2	120628929	120629129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19434.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	8.6876637132591	8.70521371112934	8.67587106467526	8.62975651764904	8.79210407917387	8.73812723034519	8.88299895005512	8.76376531177121	0.153346536951382	0.272527726695247	0.58395046219019
Merged-chr2-166712484-4	chr2	166712390	166712590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	1342.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	5.99042523732839	5.74591316535164	5.68920927453807	5.56614310079027	5.88520442750933	5.94100972342237	6.09685935442443	5.6039382826879	0.243695665502353	0.36147999572402	0.666752086050537
Merged-chr7-125588835-2	chr7	125588734	125588934	+	834.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14595.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	2.54636062514033	2.75048932440422	2.70110256353859	2.62863181870641	3.04350990433119	3.07830061951132	3.17230561009685	3.18484518946466	2.06972283083122	0.000909306579769936	0.0124828414737597
Merged-chr10-75298762-4	chr10	75298653	75298853	+	894.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-18124.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	4.0682371909278	4.40584895467304	4.3060049497808	4.34515009372317	4.18664172260337	4.19314743992813	4.44748859701907	4.30331463120666	-0.023818923280045	0.951606820265368	0.982792981377963
Merged-chr15-83100190-4	chr15	83100082	83100282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023475)	promoter-TSS (NM_023475)	-23.0	NM_023475	68607.0	Mm.30056	NM_023475	ENSMUSG00000058586	Serhl	0610008B10Rik|1110019M09Rik|AU019786	serine hydrolase-like	protein-coding	8.23003717116331	8.36539754317582	7.79559436447931	7.88581390970604	8.11252611766022	8.29038278136026	7.74980429383682	7.84522953395106	-0.0909476577694571	0.663250706686299	0.860454250420379
Merged-chr2-124618736-12	chr2	124618759	124618959	+	892.119446	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	8563.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	3.27733725445997	3.35571155614251	3.27782178273119	3.04986117955728	3.14962127455428	2.88912505224635	2.6995677442362	2.92325163651293	-1.2841459635982	0.0490478873604163	0.228944820934295
Merged-chr2-35729704-4	chr2	35729616	35729816	+	992.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001114125, exon 17 of 17)	3' UTR (NM_001114125, exon 17 of 17)	32984.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	4.69126372396409	4.66227316006622	4.94684438478548	5.13854464580073	4.71239925913947	4.45289523677869	5.04699571350825	4.76703223087506	-0.259334207370571	0.479190315996357	0.754958885816523
Merged-chr2-94406545-4	chr2	94406434	94406634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027831)	promoter-TSS (NR_027831)	155.0	NM_183106	74569.0	Mm.248504	NM_183106	ENSMUSG00000027194	Ttc17	9130020K17Rik|D2Bwg1005e	tetratricopeptide repeat domain 17	protein-coding	6.66602633202852	7.13629593722422	7.21720018529058	6.54220070337732	6.73330440610128	7.01921726461168	6.39311136028363	6.83780883267661	-0.21406080906814	0.401405391879869	0.699015960008463
Merged-chr15-59201411-3	chr15	59201303	59201503	+	845.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-105545.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	3.4404421741209	3.41168830045088	3.32501542284361	3.68587304737114	3.24028355522931	3.61073373062945	3.18803838392965	3.5950806680713	-0.22128470605325	0.684447836191697	0.870747319611953
Merged-chr19-41264762-4	chr19	41264634	41264834	+	813.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133352)	promoter-TSS (NM_133352)	-730.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	3.95593126139929	3.61857015072285	3.80718114235499	3.75441781967451	4.08517924679084	3.92743082613036	3.93937628430025	3.95412618283311	0.559923352686053	0.198839580825515	0.500526867107314
Merged-chr2-30093838-4	chr2	30093759	30093959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025428)	promoter-TSS (NM_025428)	-224.0	NM_001037762	66220.0	Mm.22538	NM_025428	ENSMUSG00000015335	Zdhhc12	1190004A01Rik	zinc finger, DHHC domain containing 12	protein-coding	8.20144309337186	8.25083996245229	7.94186257084839	7.92025045051503	8.1691672304603	8.35064914603822	8.1930510114169	8.08023064980018	0.150694965307647	0.377754006966094	0.680424390889998
Merged-chr10-94312402-5	chr10	94312253	94312453	+	824.493347	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	CpG	404.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	3.45081216755647	3.60314635758581	3.66262591130918	3.48592354388424	3.46230843012121	3.56557704309705	3.43852905456679	3.55941580117716	-0.146148223555434	0.764570637709001	0.907749089629854
Merged-chr15-84127084-4	chr15	84126986	84127186	+	846.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3911.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	4.36113872566091	3.98884532821553	3.69238015261937	4.27712627142723	4.07878766668293	4.19431516836589	3.90548110635232	3.91909983216377	-0.217393125103073	0.634017228246029	0.844935157053758
Merged-chr13-113844074-4	chr13	113843980	113844180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	49572.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	5.93901095145321	5.92398097791373	6.0767250470408	6.46507185708086	6.17193170316555	5.96694533819265	6.68677665822224	6.39439200453862	0.292959144596257	0.293180204965986	0.605737825005774
Merged-chr10-8884562-4	chr10	8884451	8884651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	MIRb|SINE|MIR	1519.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.8916765755283	6.17648759364494	6.02690981318873	6.18518882839088	5.97446169908675	6.09152726877292	5.8154407547753	5.9347736655552	-0.204714852856096	0.397268935315619	0.695677554231073
Merged-chr6-115361746-3	chr6	115361599	115361799	+	936.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308354)	promoter-TSS (NM_001308354)	555.0	NM_001308352	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	4.14834326725302	4.26680348890972	4.05529133607032	4.22490232692166	3.75295973850721	3.96637894433364	4.17455071968181	4.23354360279698	-0.374233341512745	0.382735907698366	0.684715087190841
Merged-chr4-86427565-4	chr4	86427468	86427668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029967, exon 28 of 28)	3' UTR (NM_029967, exon 28 of 28)	130735.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	5.15517756260106	4.89266202644863	5.42086000676038	5.23372252445606	5.15699243660474	5.2641316745265	5.22465768451076	5.33490635301753	0.0996377569065287	0.743004887546203	0.898691548174051
Merged-chr10-41953809-2	chr10	41953709	41953909	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 10 of 17)	intron (NM_001034858, intron 10 of 17)	64573.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	3.24672555147686	2.97586720028881	3.08262957393427	2.86683946100152	3.17854650862108	3.00213260717094	2.81682329769161	3.13815058317037	0.0137976315015454	0.981753877329066	0.993492379943959
Merged-chr3-104442176-4	chr3	104442105	104442305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69713.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	7.4541939062444	7.4848989163924	6.79960851731259	7.20504388650952	6.87367864540129	6.90145067132427	7.06607268022715	6.6700940308499	-0.521505954074169	0.0210406329733238	0.132453878881365
Merged-chr2-126477786-4	chr2	126477690	126477890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	13763.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	7.38483286141526	7.6924725082081	7.72908655605444	7.51586482838085	7.26388424198531	6.85586334590959	6.97367931248433	7.39079391095873	-0.592663102201708	0.00396832993832239	0.0398113821958913
Merged-chr8-79375036-4	chr8	79374959	79375159	+	933.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	MIRb|SINE|MIR	24409.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	4.5289799521847	4.6286797604768	4.61551175514196	4.92771109467574	4.92248040625207	4.86866802846489	4.63494001583025	4.76854529625514	0.212552534788034	0.546797290196726	0.796555214156745
Merged-chr17-30112683-3	chr17	30112588	30112788	+	850.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356265, intron 2 of 5)	B4|SINE|B4	107649.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	3.39703303169785	3.28695234711957	3.56684228775247	3.79325261693509	3.90155345856591	3.24262044224517	3.3854510054249	3.71416686388585	0.190227657627069	0.737954967097425	0.896580162228794
Merged-chr2-91950424-4	chr2	91950325	91950525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166597)	promoter-TSS (NM_001166597)	-77.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	5.93680580534822	5.69759877332548	5.84788060258121	6.09935090459948	6.00252184617538	5.52026771884604	5.6177049960408	5.99704274292883	-0.163140541182867	0.552324706013852	0.799567212051495
Merged-chr5-115515582-3	chr5	115515481	115515681	+	772.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	8905.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	3.14804115003832	2.99392564177864	3.27112333263657	3.13854397358065	3.71298378731247	3.38459751026694	3.42139359236057	3.20958811083052	1.1262334632066	0.0397583080186896	0.20103407021825
Merged-chr18-49756343-3	chr18	49756237	49756437	+	938.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170960)	promoter-TSS (NM_001170960)	-736.0	NM_026854	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	3.93663373366525	3.78065188570769	4.39133625572537	3.46367551165355	3.9542764539222	3.90145032596707	3.96835250927792	3.9834578678236	0.0692724009914173	0.889186205201621	0.958467465769678
Merged-chr14-31188897-4	chr14	31188803	31189003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 7 of 13)	intron (NM_001347583, intron 7 of 13)	17923.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	7.3844975457656	7.79009635217142	7.58243001437252	7.45204356881724	7.48661204086571	7.43533650114358	7.41794202196537	7.46870058483459	-0.140815527491932	0.438362237798472	0.72634167615479
Merged-chr5-112249829-4	chr5	112249767	112249967	+	955.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021351, intron 3 of 5)	intron (NM_021351, intron 3 of 5)	2651.0	NM_001312884	12959.0	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	5.19024617909165	4.68799845010439	4.97437750698161	5.12546729180324	4.76616655253559	4.66899347160618	4.98331415847178	4.93678432490199	-0.339016856211445	0.31620747743888	0.628117434672565
Merged-chr11-97659191-4	chr11	97659085	97659285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4227.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	8.07742201366938	8.46899756391207	7.97162574235634	7.55706903430577	8.22011425908196	8.32514461261392	8.04661677610214	7.74516446743491	0.0609416461011286	0.792427863622457	0.919610988558604
Merged-chr18-53904445-4	chr18	53904335	53904535	+	994.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 3 of 12)	Lx8|LINE|L1	42322.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	5.39451847333444	5.09078403005174	5.02890817596721	5.3442338515286	5.7629907023732	5.20910017373638	5.6038400392592	5.69847052347611	0.634493407080328	0.0350932109092485	0.185593257991634
Merged-chr10-99181717-4	chr10	99181620	99181820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	73585.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	8.05001517161853	8.28277660073637	8.5481935279476	8.52800956339372	7.80036932309632	7.79247363348314	8.26634753382464	8.26100380049359	-0.411152749317985	0.0428893998306529	0.210655850851921
Merged-chr6-89000479-3	chr6	89000386	89000586	+	777.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95624.0	NR_134978	232217.0	Mm.281744	NM_175017	ENSMUSG00000055403	4933427D06Rik	-	RIKEN cDNA 4933427D06 gene	ncRNA	3.17817890078945	3.09749621086123	3.07201546719286	3.18606524634567	2.86486872543687	2.86427359611874	2.75108466629177	2.60857625602088	-1.64820215944176	0.0122492212720419	0.0912302313406579
Merged-chr4-125066714-4	chr4	125066629	125066829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175246)	promoter-TSS (NM_175246)	57.0	NM_001356560	76793.0	Mm.22548	NM_175246	ENSMUSG00000050213	Snip1	2410133M08Rik	Smad nuclear interacting protein 1	protein-coding	6.63251555547878	6.45877617069033	6.60262177253534	6.52597595822399	6.58619177270014	6.69788816815907	6.86074353982306	6.53342605122962	0.173108577674734	0.406376653902799	0.70289842445172
Merged-chr12-32344088-2	chr12	32343988	32344188	+	825.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-34701.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	2.57066914926593	2.51185020312682	2.91259017114845	2.59101651373753	2.86807882724438	3.02423037042227	2.90116456675554	3.18145697110775	1.58376803339585	0.0148782667094021	0.10421758474879
Merged-chr16-32698762-4	chr16	32698649	32698849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25595.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	5.85156796207914	6.11156762634265	6.10957786490976	6.30959577764164	5.63955258159435	5.54975968098267	5.91385482180913	5.80005237185985	-0.622644216298682	0.0165942587344594	0.112674114514937
Merged-chr4-136971175-3	chr4	136971058	136971258	+	823.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14342.0	NM_007939	13842.0	Mm.1390	NM_007939	ENSMUSG00000028661	Epha8	AW047546|Eek|Hek3|mKIAA1459	Eph receptor A8	protein-coding	3.64786415511468	3.98199125624017	3.95612142037562	3.70391424761351	3.64053889244224	3.64482226936452	3.74404965764701	4.16274586350719	-0.0356947668187486	0.940803904186453	0.978655497852973
Merged-chr8-123319891-4	chr8	123319724	123319924	+	918.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1248.0	NM_016925	14087.0	Mm.6536	NM_016925	ENSMUSG00000032815	Fanca	AW208693|FACA	Fanconi anemia, complementation group A	protein-coding	4.18671043873188	4.68371447523868	4.13482448040212	3.53903155487741	4.67661550087259	4.51149150463405	4.63562447244264	4.85388946342788	1.08508162894029	0.0199332517568322	0.127753369962143
Merged-chr11-70500418-1	chr11	70500318	70500518	+	625.0	f0_balb.idr	Intergenic	Intergenic	-4856.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	3.53455331423365	3.6882924035832	3.32576788967434	2.98264091056464	3.12944751412674	3.32106161163129	2.99751425282584	3.2659254369621	-0.818852775559617	0.175585294341491	0.47032648424841
Merged-chr5-124582735-4	chr5	124582626	124582826	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181410, intron 2 of 12)	intron (NM_181410, intron 2 of 12)	3578.0	NM_181410	209357.0	Mm.185467	NM_181410	ENSMUSG00000029387	Gtf2h3	34kDa|5033417D07Rik|BTF2|BTF2 p34|C730029A10|D5Ertd679e|TFIIH	general transcription factor IIH, polypeptide 3	protein-coding	5.14747688929996	5.0893636588373	4.80361868249292	5.30679339067601	5.45611059598376	5.14703253572049	5.52077247910244	5.63927855509065	0.609316986390935	0.0522823407171609	0.238124182870924
Merged-chr14-25474157-4	chr14	25474067	25474267	+	979.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	14982.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	5.5878767355264	4.62033787234731	4.78696900256753	5.30933619619792	5.39405576902703	5.42332549742522	5.03215867781061	5.01809749425682	0.174425355972721	0.642566192491052	0.849281743516184
Merged-chr14-60738733-4	chr14	60738659	60738859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310594, intron 1 of 9)	L1MB2|LINE|L1	5855.0	NM_001310594	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	6.13350796244654	5.69212527624749	5.7663894764408	6.15696738901832	5.92814433150977	5.69628294015453	5.65993038723343	5.99152508709254	-0.213577745352679	0.42916585210557	0.720123800603074
Merged-chr3-87961035-4	chr3	87960940	87961140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10053.0	NM_016701	18008.0	Mm.331129	NM_016701	ENSMUSG00000004891	Nes	AA166324|C78523|ESTM46|Ifaprc2|Marc2|RC2	nestin	protein-coding	6.08325470394224	6.16331578552205	6.30953833306916	6.09562282510609	5.88151535250538	6.03679028848882	6.07349810730324	5.7799414765555	-0.338626688300261	0.155928672504277	0.441815949458189
Merged-chr3-19474253-3	chr3	19474150	19474350	+	966.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34345.0	NM_001163536	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	4.81021502730115	4.16866042718554	5.38901552015807	5.69033034149821	3.708702453065	4.28096964260727	4.06969364080434	4.14284545595853	-2.43883195685303	1.68894388338942e-06	5.63078860308081e-05
Merged-chr5-120775880-1	chr5	120775780	120775980	+	919.0	f0_balb.idr	intron (NM_145226, intron 1 of 15)	RLTR11A|LTR|ERVK	1779.0	NM_145226	246727.0	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	4.10606751794952	4.12523358531296	3.62353348114012	3.41278257626522	3.64806853782018	3.80117938875997	3.60970745082848	3.88537778634949	-0.315974370384523	0.541830484095559	0.793491190310592
Merged-chr4-151934496-2	chr4	151934396	151934596	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172704, intron 1 of 15)	CpG	776.0	NM_172704	230935.0	Mm.21353	NM_172704	ENSMUSG00000039768	Dnajc11	E030019A03Rik	DnaJ heat shock protein family (Hsp40) member C11	protein-coding	3.19917701314862	2.984617090933	3.31597763993979	3.33241801260347	3.19222548250499	3.24811079113397	3.45781647520497	3.42069043414619	0.402061158252446	0.465597674621462	0.746044232179574
Merged-chr14-76153501-2	chr14	76153401	76153601	+	972.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	42610.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	3.08420736271187	2.96521159398308	3.08465773833136	2.74547536047045	2.89035631470124	2.57937747005496	2.62905147985729	3.1867568149296	-0.562941598305359	0.420156486483405	0.713141896017796
Merged-chr1-51480623-4	chr1	51480517	51480717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2218.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	6.53939690765057	6.42130315016196	6.28493825034924	6.43826729762245	6.08804375073178	6.27957564316816	6.41149234452574	6.20255129398697	-0.272443897293864	0.222956310415521	0.531069778572449
Merged-chr7-73524617-4	chr7	73524541	73524741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	17105.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	5.00693612400803	5.022212257482	5.52700406520442	4.90311900437647	4.94918815615903	5.2516892496073	5.20975067223843	5.0737418701855	-0.00806540688904276	0.980564576827919	0.99281244474172
Merged-chr15-64447452-4	chr15	64447353	64447553	+	862.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-64534.0	NM_010026	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	4.30502733093282	4.13052297359823	4.05929740578612	4.84006342457055	4.40263201760241	4.28960308533951	4.45289208512351	4.34708816526478	-0.0534252698725283	0.903146344305234	0.964166361786269
Merged-chr11-100441118-4	chr11	100441019	100441219	+	987.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026561)	promoter-TSS (NM_026561)	-30.0	NM_001102650	68106.0	Mm.28738	NM_026561	ENSMUSG00000017176	Nt5c3b	2610037D24Rik|AI841843|C330027I04Rik|Nt5c3l	5'-nucleotidase, cytosolic IIIB	protein-coding	5.61007577822226	5.1221046391817	5.48251846772214	5.27747440066296	5.52407908860447	5.35535146922082	5.67597307060068	5.13971089942674	0.119731925650765	0.693419676103416	0.875305395019895
Merged-chr13-105216575-4	chr13	105216531	105216731	+	753.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 5 of 7)	intron (NM_001360891, intron 5 of 7)	76383.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	3.71115365445208	3.7379075277311	3.71168255969468	3.7454619285282	3.66564047177501	3.26379102743768	3.64536084091933	3.8528144247492	-0.309454707719755	0.532976992968597	0.788398805429988
Merged-chr7-98106790-4	chr7	98106677	98106877	+	960.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 3 of 48)	intron (NM_008663, intron 3 of 48)	2471.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	5.11771345448685	4.3832860278931	4.711047903015	4.48983877560337	5.47391835363939	5.19515319326104	5.44740597950988	5.20680831910177	1.26313862310502	0.000243141490097147	0.00426690535592329
Merged-chr3-37648634-3	chr3	37648523	37648723	+	715.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8676.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	3.04373997162181	3.22581608751669	3.16032653036799	3.1846819549831	2.91153252206629	3.02400335989986	3.20151675410174	2.77442659314139	-0.713274977193218	0.235170901631818	0.545162989977241
Merged-chr4-135282900-4	chr4	135282789	135282989	+	929.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10129.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	4.48471434089292	4.69895503063953	4.27659754795771	4.05894114841456	4.4571214493176	4.15318894500123	3.83852685777775	4.48247516349765	-0.314832403261478	0.485513756285435	0.759349088660037
Merged-chr12-85479600-12	chr12	85479470	85479670	+	915.736084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5680.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	5.46465758683532	5.04079673946958	4.44242340258635	4.45488496984731	5.03766206489973	5.1614066749892	4.74063852442637	5.17383885990292	0.237846922435732	0.559817689539579	0.804069320655764
Merged-chr1-65186585-4	chr1	65186505	65186705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111320)	promoter-TSS (NM_001111320)	-80.0	NM_001310624	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	8.45011355535556	8.69141083475459	8.46173730778945	8.4511795734442	8.60501621796804	8.59256319441396	8.68818111340296	8.64126209009468	0.144241057954204	0.335183490537848	0.645561752117149
Merged-chr11-5629322-4	chr11	5629214	5629414	+	797.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023816, exon 16 of 27)	exon (NM_023816, exon 16 of 27)	59630.0	NM_023816	76389.0	Mm.67300	NM_023816	ENSMUSG00000020481	Ankrd36	1700008J08Rik|1700012M14Rik|Ankrd48	ankyrin repeat domain 36	protein-coding	3.44990581637772	3.71557212956433	3.51056992052689	3.57297647332293	3.96066141517511	3.7409131311522	3.80995570250237	3.77671758776744	0.79918644826456	0.0853159992743555	0.318041894659862
Merged-chr5-129021038-6	chr5	129020998	129021198	+	893.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009391, intron 4 of 6)	intron (NM_009391, intron 4 of 6)	942.0	NM_009391	19384.0	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	3.51472751855458	3.33849013471167	3.62234084342904	3.29249404603162	3.58311020939375	3.74062377912421	3.55541147787787	3.67052520549761	0.658030001251358	0.179604892888883	0.475824186021704
Merged-chr11-44471188-4	chr11	44471106	44471306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024475)	promoter-TSS (NM_024475)	-658.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	5.91168265923105	6.1525155305746	5.68834254835478	5.84282705454302	6.27787011008726	5.94431426564827	5.7883412513674	5.95337012777781	0.168115428369688	0.52348221647398	0.782507755382099
Merged-chr2-132217267-4	chr2	132217166	132217366	+	737.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30522.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	4.14918233402424	4.18622037282123	4.04913287726802	4.23995183595536	4.49879224534264	3.9438519318015	4.39121346429622	4.55725101003697	0.510799635279416	0.213687695239152	0.519186116173799
Merged-chr6-51534019-4	chr6	51533923	51534123	+	944.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361581, intron 1 of 6)	intron (NM_001361581, intron 1 of 6)	9763.0	NM_001361580	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	5.05139107066056	5.21424980251329	5.11381364662549	4.42545820700206	4.9600646688736	5.02188054219747	4.62590073096026	4.60032513524976	-0.312111582663476	0.41974372496303	0.712781243418825
Merged-chr6-115288424-3	chr6	115288327	115288527	+	711.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-36222.0	NM_001356406	110595.0	Mm.255607	NM_080639	ENSMUSG00000030317	Timp4	Timp-4	tissue inhibitor of metalloproteinase 4	protein-coding	3.3054888487553	3.51559180309084	3.37083183256419	3.96899827750132	3.37185961417901	3.72045307079343	3.63999103166136	3.79743698090555	0.167596339938857	0.763943643196005	0.907492132891533
Merged-chr3-88494107-4	chr3	88494007	88494207	+	904.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019390)	promoter-TSS (NM_019390)	-795.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	3.8035352955646	3.56534365857721	3.58278967443691	3.90090937278675	3.66469256455857	3.87176462513887	4.01745341342076	3.99038355662817	0.446948184915225	0.343621487090593	0.652264111594778
Merged-chr3-9605960-4	chr3	9605900	9606100	+	847.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 1 of 8)	intron (NM_133218, intron 1 of 8)	4085.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	3.87764682584493	3.68454297975946	3.92794850739875	4.29107891481929	3.67102528996565	3.71439053482883	4.13181981975386	3.97342612815234	-0.265705034317308	0.584924608679364	0.817899354101612
Merged-chr17-26647353-4	chr17	26647244	26647444	+	892.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 9 of 9)	intron (NM_026170, intron 9 of 9)	-29052.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	4.21586615871552	4.47277787159364	4.88340826746244	5.29051450747039	4.05342393233968	4.12322430158414	3.91821648025083	4.64605297598943	-1.30464868691429	0.00702444233015242	0.0610119317410517
Merged-chr1-172475316-4	chr1	172475209	172475409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029612)	promoter-TSS (NM_029612)	-51.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	6.87440515595993	6.72454416323186	6.99340689693586	7.15327196182113	6.83362997557151	7.15732500274804	6.98272610894829	7.07295158740914	0.0738556657178195	0.722588316659643	0.889246248924026
Merged-chr5-36811708-4	chr5	36811671	36811871	+	744.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008550, intron 15 of 18)	PB1D7|SINE|Alu	-15017.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	2.73988978464104	2.59090284498873	2.79740085095717	2.66984744004422	2.49593627187783	2.58506527229744	2.6088227880603	2.40819695570698	-0.928266243064328	0.17692581550978	0.472175869752565
Merged-chr12-70698499-3	chr12	70698384	70698584	+	729.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127030.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	3.37691590008782	3.00398996003313	3.1197794213388	3.69442425687023	2.70297102382147	2.6687270308848	2.79005554287999	2.72246214650496	-3.03261066155886	9.04353977537864e-05	0.00186582642803384
Merged-chr19-5130691-2	chr19	5130591	5130791	+	744.549988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12283.0	NM_008451	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	2.60476325901172	2.67107362522504	2.8801633346236	2.63101686205867	3.10151672676505	3.05124093763148	3.04147668588888	2.87870089476282	1.48153458424415	0.015923471733471	0.109329294349063
Merged-chr17-5935035-4	chr17	5934929	5935129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6251.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	7.34772993012999	6.76228954482589	6.93816143403889	7.22951343501999	6.83773453855175	6.74716514367937	6.90295886361	6.21073532419242	-0.541502319909924	0.0280167496932548	0.16016418170558
Merged-chr11-79686983-3	chr11	79686889	79687089	+	841.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 10 of 14)	intron (NM_175543, intron 10 of 14)	-11903.0	NR_045898	72218.0	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	3.61783153672765	3.64796238286535	3.5119411623303	3.43809048445253	3.49548118200126	3.51051384316544	3.79020120745354	3.2675761627331	-0.0720287237259034	0.887441608613648	0.957799052224803
Merged-chr11-95347720-3	chr11	95347593	95347793	+	782.650024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172543, intron 1 of 7)	intron (NM_172543, intron 1 of 7)	10675.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	3.42865723876985	3.48724712122541	3.37216704954514	3.40245816760176	3.22827677160584	3.48655644021417	3.23938230455306	3.72350088340776	0.0277035444182341	0.958141457037446	0.98510133856897
Merged-chr4-95775724-3	chr4	95775623	95775823	+	959.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 8 of 10)	intron (NM_029347, intron 8 of 10)	191312.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	3.69741388404066	3.13306619314335	3.23936759157572	3.73115431683028	3.08871640291528	3.35237046839886	3.10117005891747	3.23775395706291	-1.04986705540375	0.0753601103628594	0.29645502904377
Merged-chr11-86993329-2	chr11	86993229	86993429	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005341, intron 1 of 4)	CpG	433.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	4.06343465024714	4.1195148074654	3.81627220892567	4.07445525535619	3.90912438213869	3.69507722455122	4.00085931374307	4.1057417828788	-0.248962398993492	0.570773584032856	0.810192301084349
Merged-chr17-7863921-3	chr17	7863818	7864018	+	797.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58944.0	NM_001081416	68655.0	Mm.379161	NM_001081416	ENSMUSG00000071984	Fndc1	1110027O12Rik|1110051A18Rik|mKIAA1866	fibronectin type III domain containing 1	protein-coding	3.79147597056966	3.68618973586331	3.32520424322985	3.7238329377316	3.79665613167685	4.00811133931409	3.50724450593169	3.8378546051818	0.445823781505554	0.369214298707395	0.673491314105063
Merged-chr10-68721196-4	chr10	68721097	68721297	+	920.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2549.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	4.68796872577168	4.48749681033499	5.21171306038221	5.25166089688574	4.68986688776298	4.69494111940882	4.66693818003558	4.68567650055222	-0.573923184017352	0.13001773736258	0.401393673131985
Merged-chr15-101134533-4	chr15	101134433	101134633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277255, intron 3 of 11)	intron (NM_001277255, intron 3 of 11)	6011.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	6.92982882063072	6.88003090262158	6.54531409317659	6.85662670536523	6.81290647791027	6.83844763187714	6.85718711194137	7.0706748973381	0.113036393823442	0.580631728197747	0.815855375987276
Merged-chr12-41096256-3	chr12	41096151	41096351	+	908.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 3 of 6)	ORR1D2|LTR|ERVL-MaLR	72161.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	3.78460074989824	4.01995379951066	4.00543700954403	4.75631617518443	4.03578434983139	3.84485588372439	4.37501255122092	4.00310097400979	-0.345280664235423	0.498354435471708	0.76759838054097
Merged-chr1-40306307-3	chr1	40306228	40306428	+	780.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123382, intron 8 of 10)	RLTR17|LTR|ERVK	-18261.0	NM_001356478	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	3.24630786098449	3.59086723705391	3.10488878812648	3.38423927583421	3.50673045121226	3.71892923673376	3.68340792442879	3.83300240600067	1.09212596564852	0.038799893660571	0.197866835219038
Merged-chr8-125620455-3	chr8	125620334	125620534	+	923.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35796.0	NR_015535	75930.0	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	3.55781894966475	3.58935449260883	3.87230631893356	3.96264518770149	3.80209783461197	3.61150945599475	3.90061938283322	3.77364913230542	0.0227155708595417	0.962175083624268	0.986416651799321
Merged-chr9-34983605-2	chr9	34983505	34983705	+	763.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190912, intron 3 of 15)	intron (NM_001190912, intron 3 of 15)	-133123.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	2.78626082748521	2.74685473378831	2.78660314756564	2.7775033778707	2.77423183916251	2.69393843613366	2.65192547360473	2.72351110714259	-0.290703527244313	0.643564439741375	0.849787035051413
Merged-chr12-101740699-4	chr12	101740590	101740790	+	926.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-22167.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	3.85698572808844	3.66838978837712	4.10643213441937	4.12667447284245	4.04626313545503	4.08567840631688	4.13225822835874	4.27281932314972	0.448308167209644	0.306309129664109	0.618781823197435
Merged-chr3-52047170-4	chr3	52047069	52047269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	57837.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	8.17379111759472	8.30821919902288	8.3974484781044	8.61563891263462	8.36734720251555	8.3211861712928	8.44876784027809	8.31667607296192	-0.0352315245192046	0.832824592849176	0.936130745214861
Merged-chr6-149174156-4	chr6	149174055	149174255	+	988.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153963, intron 1 of 4)	intron (NR_153963, intron 1 of 4)	14557.0	NM_001356344	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	5.10098450198405	4.84053886944053	4.97005976722813	5.20835206514582	4.57857457862939	4.92007164817409	5.10734559015891	5.06669495866014	-0.241600338620465	0.478120881657238	0.754259447921143
Merged-chr19-53802038-4	chr19	53801942	53802142	+	879.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	-90189.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	3.98722739736347	3.55164494989821	3.62105308003681	3.76701801905361	4.1917057418288	3.6119831727417	3.97009657132285	4.15541086044939	0.74352491923109	0.118702655051813	0.381175506809211
Merged-chr11-3166779-4	chr11	3166681	3166881	+	988.5	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 7 of 32)	B3|SINE|B2	26682.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	4.67924328505895	4.10510545183447	4.62060293688867	4.78318461891894	2.9929888679668	3.28153893295102	3.22953404897333	3.23809689436248	-7.36914590628896	1.07505151386821e-11	9.63741709138857e-10
Merged-chr19-56637334-4	chr19	56637247	56637447	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85025.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	4.18766722764005	4.20161552540865	4.87163822289223	5.20016713237215	4.13383400442363	4.08670743233117	4.7510513293214	4.46965100045218	-0.685951058439385	0.156187550265659	0.442021137941209
Merged-chr11-32349814-4	chr11	32349719	32349919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177364, intron 1 of 12)	intron (NM_177364, intron 1 of 12)	2008.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	6.70066573469451	6.72371648672796	6.63772122959856	6.82917370232847	7.08386182044478	7.19447960525052	7.34736519045503	6.93805884944098	0.575866899735637	0.00405143867097072	0.0404683347124649
Merged-chr17-87275541-4	chr17	87275425	87275625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015506, intron 4 of 4)	intron (NR_015506, intron 4 of 4)	7289.0	NR_015506	74597.0	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	7.07720671584457	7.3774690604397	6.76107946444436	6.92083914644691	6.97735198919659	7.03923075998431	6.72670463298962	6.92486300022769	-0.181209746804466	0.407560581745857	0.70380769632612
Merged-chr5-90900935-4	chr5	90900840	90901040	+	988.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2959.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	5.108414084246	5.14209927834649	5.20191476088552	5.30493225695545	4.70293186687257	4.96055611897488	5.20524405038926	4.77936597280903	-0.543962350723779	0.0925130503918848	0.332721363887815
Merged-chr12-83594864-3	chr12	83594764	83594964	+	946.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183154, exon 2 of 12)	exon (NM_183154, exon 2 of 12)	2358.0	NM_001359167	217695.0	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	3.83646438622092	4.29897942595886	3.69623195194013	3.05913103903382	3.22444750573484	3.19522560133337	3.21421301585243	3.41947714345084	-1.76262328256817	0.00545132949870423	0.0506289382030621
Merged-chr9-99243364-4	chr9	99243262	99243462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023873)	promoter-TSS (NM_023873)	21.0	NM_023873	68121.0	Mm.288739	NM_023873	ENSMUSG00000056267	Cep70	6720484E09Rik|Bite|C030018L16Rik	centrosomal protein 70	protein-coding	8.25707576973745	8.14546744894553	7.6739719069504	8.0351378897256	8.32755291135039	8.22189298648125	8.30620317380556	8.07179999178578	0.244361087303648	0.181721753454583	0.478390065102424
Merged-chr3-129270211-1	chr3	129270111	129270311	+	617.666687	f0_balb.idr	3' UTR (NM_007934, exon 20 of 20)	3' UTR (NM_007934, exon 20 of 20)	56279.0	NM_001042502	18741.0	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	3.60071629300779	3.31917168582109	3.86780761228478	3.53609533853045	3.20416945750306	3.24106269753471	3.42984850222265	3.3246021292636	-1.01641603673423	0.0609475204580082	0.260925815760845
Merged-chr17-21650079-4	chr17	21649913	21650113	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166497)	promoter-TSS (NM_001166497)	-598.0	NM_001166497	73229.0	Mm.296733	NM_001166497	ENSMUSG00000035868	Zfp983	3110052M02Rik|mszf57|mszf71	zinc finger protein 983	protein-coding	4.20938589434233	4.30328791655818	4.11365188181038	4.35096022242529	4.33661998870848	4.42675909528459	4.32259578024206	4.11126986727266	0.114796732245369	0.768890543873174	0.909525202704679
Merged-chr9-71165286-4	chr9	71165190	71165390	+	973.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2001.0	NM_022026	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	4.90985608718428	5.18742842300865	5.02206673461039	5.15923706080611	5.12933174098675	4.83796601069815	5.51193759228634	5.41266074337723	0.309428295602391	0.341497898130868	0.650546636435835
Merged-chr4-101742204-4	chr4	101742126	101742326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146146, intron 4 of 18)	intron (NM_146146, intron 4 of 18)	24819.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	6.52714691284344	6.59383217628214	6.79709205196907	6.71814818697476	7.09745591595681	7.00182991733575	7.04100177479086	7.03707771640868	0.532761364920635	0.00596785334803739	0.0540233795574149
Merged-chr2-148393326-4	chr2	148393246	148393446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2031.0	NM_009219	20608.0	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	6.12372943020351	6.08758595194482	6.22643836001696	6.74999454582056	6.08028343553562	6.23704856261161	6.26994431207766	6.43671074995994	-0.137885987543863	0.605161063658631	0.828698063423653
Merged-chr5-123683846-4	chr5	123683700	123683900	+	968.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 1 of 18)	CpG	561.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	4.73496602893932	4.63262474234895	5.01786428208574	4.44173318064497	4.79132474059986	5.18884214701252	4.54686150851421	5.1346848515405	0.463345695280653	0.213534258928529	0.51900819587754
Merged-chr12-80790453-4	chr12	80790344	80790544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178682)	promoter-TSS (NM_178682)	-88.0	NM_178682	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	8.24787575421315	8.51024641234484	8.04089450191561	8.05757910240181	8.40245583705	8.50039056859571	8.36822105701533	8.23211358966858	0.194346673730813	0.272441980606317	0.58387221080833
Merged-chr3-158062328-4	chr3	158062235	158062435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359763, intron 11 of 13)	intron (NM_001359763, intron 11 of 13)	25653.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	5.67138971168428	6.08491491389087	6.1568687359692	5.87652619304829	5.53272360026658	6.06813844632397	5.50303666606511	5.81986827965863	-0.350631801915086	0.211159483693277	0.515762969934016
Merged-chr9-114592490-4	chr9	114592369	114592569	+	930.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153585, intron 18 of 19)	intron (NM_153585, intron 18 of 19)	-28100.0	NM_001042503	636931.0	Mm.17857	NM_001042503	ENSMUSG00000079259	Trim71	2610206G21Rik|AL022943|Gm1127|Lin41|lin-41|mLin41|mlin-41	tripartite motif-containing 71	protein-coding	4.41137362753073	4.19493463202718	4.4120466208645	4.39986331587428	4.38969051061617	4.82459788661852	4.70501959538377	4.91438582304084	0.79905894599866	0.033347577004013	0.179522552077495
Merged-chr15-72810129-4	chr15	72810079	72810279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002864, exon 1 of 1)	non-coding (NR_002864, exon 1 of 1)	145.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	5.89840004727023	5.9080860043205	6.23983994188512	5.32985026551725	5.67746140058057	6.26535459500124	5.84616893938302	6.12554419164011	0.196310618200335	0.526757585566783	0.783935324603861
Merged-chr3-31095007-4	chr3	31094932	31095132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011386)	promoter-TSS (NM_011386)	-26.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	7.84881828401216	8.2185846880066	8.05615104650144	7.74426141097154	8.15666457782245	8.59050839571447	8.21654526234307	7.69753371391495	0.288990662195532	0.190247921039677	0.489380823666769
Merged-chr6-115847210-4	chr6	115847111	115847311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010774, intron 3 of 7)	B3A|SINE|B2	6130.0	NM_010774	17193.0	Mm.259308	NM_010774	ENSMUSG00000030322	Mbd4	Med1	methyl-CpG binding domain protein 4	protein-coding	6.25185879329116	6.44724261950677	6.21495026575401	5.61906010207204	6.50689863930569	6.24879123376014	6.12412170769223	6.1101846267459	0.167889634572039	0.551232973012198	0.798837168776829
Merged-chr11-23768056-4	chr11	23767962	23768162	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	2908.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	5.09857606031214	4.89878156474731	4.96494682850759	5.17118029995717	4.981772157806	5.06670541968719	5.00963456752481	5.06369703278217	-0.0400227915621783	0.897026177002366	0.9615041483224
Merged-chr12-116405956-2	chr12	116405885	116406085	+	829.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NR_028421)	promoter-TSS (NR_028421)	583.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	3.50998156053328	3.6199256504471	3.62105744573179	3.454103269148	3.73276989626036	3.43850094984624	3.65779512178286	3.85932017036624	0.432828870693567	0.368085415301444	0.672564472502765
Merged-chr5-148494791-4	chr5	148494696	148494896	+	794.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56877.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	3.58529522513674	3.51002037835959	3.69833255745168	3.29025591763912	3.9024402472501	4.02125753129276	3.78557482704668	3.98458333625819	1.25919763342418	0.00722264403434941	0.06230766933959
Merged-chr19-31972186-4	chr19	31972069	31972269	+	819.520874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103408.0	NM_001081074	69865.0	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	4.02040132519624	4.28185562692349	4.07057674060582	4.2754903484436	3.76568589887973	4.09273003501284	4.10046984550816	4.40729503050753	-0.182047447611819	0.678000661360086	0.867963917899731
Merged-chr10-80342939-4	chr10	80342816	80343016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001285435, exon 8 of 13)	exon (NM_001285435, exon 8 of 13)	5532.0	NM_001285435	66548.0	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	6.40551741050166	6.43376199503292	6.15859515823871	6.28151084661594	6.29537342421562	6.47422549968421	6.53531669448102	6.38464072381502	0.144289890140236	0.511663244883977	0.775596356402594
Merged-chr12-111442560-4	chr12	111442463	111442663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009396)	promoter-TSS (NM_009396)	-98.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	9.25343305072308	9.49747219253451	9.39819525305943	9.09590725899054	9.47070427156498	9.65792346631893	9.58234860606102	9.21220441642805	0.213264924905011	0.202686534578209	0.505268676501282
Merged-chr11-72260074-4	chr11	72259968	72260168	+	923.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004148, intron 4 of 11)	intron (NM_001004148, intron 4 of 11)	6536.0	NM_001004148	237831.0	Mm.340778	NM_001004148	ENSMUSG00000020805	Slc13a5	Indy|NaC2/NaCT|Nact|mINDY	solute carrier family 13 (sodium-dependent citrate transporter), member 5	protein-coding	4.46932673253235	4.57194391169308	4.55566179348146	4.78162621224924	4.37232380120822	4.55451896348366	4.85902235303069	4.87929009598822	0.137940740132997	0.712121169165327	0.884727078056288
Merged-chr3-15848577-4	chr3	15848456	15848656	+	969.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001173459)	promoter-TSS (NM_001173459)	-69.0	NM_001173459	100038947.0	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	5.03773059438622	5.34219175602144	5.47096988152797	5.35046666606502	5.78485963683754	5.70030614745413	5.64996867652372	5.62604940909512	0.655199551510386	0.0169352097075804	0.114302227553183
Merged-chr5-100566974-4	chr5	100566867	100567067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139198, intron 1 of 4)	intron (NM_139198, intron 1 of 4)	5238.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	6.49096999544007	6.23219306286304	6.43995314374875	6.5159850306987	6.66500057439189	6.7020736314962	6.93283030030043	6.61676801404854	0.439500977182177	0.0403944447801945	0.203096431801191
Merged-chr9-107771112-4	chr9	107770997	107771197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148930)	promoter-TSS (NM_148930)	-95.0	NM_001359525	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	7.82775262721939	7.81039414287533	7.62368081767649	7.6254321040722	7.64526975553355	7.43522801678294	7.70074304390862	7.38311100171263	-0.222733346428173	0.21345711325973	0.518891563290678
Merged-chr11-4202582-4	chr11	4202481	4202681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	B3|SINE|B2	-15670.0	NM_028022	71962.0	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik|Castor1	GATS protein-like 3	protein-coding	5.91668544470498	5.97017551835615	5.87200753680141	6.10281311989867	5.99527672296182	5.61215068341905	6.09285903233992	5.63906724048717	-0.186089563975322	0.477002345278272	0.753262411469187
Merged-chr1-55822777-4	chr1	55822639	55822839	+	747.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108502.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	4.12101586129664	3.73615185474919	4.0770198333097	4.37458508659548	3.68696153374107	4.15466308998004	4.01322724206188	3.76883217875569	-0.528213255650084	0.264396775466162	0.576455127446606
Merged-chr10-122678774-4	chr10	122678629	122678829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106182)	promoter-TSS (NR_106182)	-33.0	NM_176919	319468.0	Mm.489703	NM_176919	ENSMUSG00000034613	Ppm1h	A430075L18Rik|ARHCL1|C030002B11Rik	protein phosphatase 1H (PP2C domain containing)	protein-coding	6.87418494099982	7.01339958838994	7.09096549012149	6.95692939900266	6.92530782487391	7.05217072076872	7.155573150785	7.08598414078888	0.0941318299479426	0.618449203242845	0.836000920352511
Merged-chr4-6453053-4	chr4	6452939	6453139	+	937.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	1232.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	4.15828833782692	4.44540916567441	4.43091647301096	4.15384524068035	4.63982092686284	4.56101468258014	3.92556879213567	4.46820763137893	0.314312287347066	0.453214147371288	0.737372963856109
Merged-chr18-54937920-3	chr18	54937829	54938029	+	947.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	52251.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	4.54631705202019	4.07662925090273	4.17961630517309	4.37177107134224	3.7276204706878	3.64818081017754	3.70928514580169	3.83692203927584	-1.60834365569365	0.000461073929483891	0.00722721454013078
Merged-chr3-60580098-4	chr3	60579988	60580188	+	977.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	RMER10A|LTR|ERVL	78909.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.78612225350297	4.9210182635726	5.49042838322256	5.47775502400475	5.23187165781601	5.19575787358499	4.88556542196122	5.15161978988847	-0.175836357127316	0.614244348614599	0.833755382254401
Merged-chr5-65846782-3	chr5	65846679	65846879	+	672.472229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16790.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	3.43120356105313	3.14508408929288	3.24171975634618	3.26752868737777	3.71399198192794	3.76871233809375	3.63298315058749	3.83197466944123	1.526035374375	0.00210942187805834	0.0243704820416027
Merged-chr11-76997482-3	chr11	76997366	76997566	+	793.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1131.0	NM_010484	15567.0	Mm.300318	NM_010484	ENSMUSG00000020838	Slc6a4	5-HTT|AI323329|Htt|Sert	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	protein-coding	3.64316699888882	3.45464614692584	3.69228303409027	3.42114924902837	3.44144736082159	3.81174061243537	3.35667955431762	3.17026894768646	-0.290792593882079	0.588192495998899	0.819610917619141
Merged-chr16-30309613-2	chr16	30309513	30309713	+	602.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008148, exon 2 of 2)	exon (NM_008148, exon 2 of 2)	1168.0	NM_008148	14729.0	Mm.3519	NM_008148	ENSMUSG00000047953	Gp5	GPV	glycoprotein 5 (platelet)	protein-coding	3.02427371344665	3.02763151337393	3.0246415035018	3.17706803233519	2.85727910240978	3.00431697880265	3.12811930826948	3.08223721800802	-0.226557449413717	0.697151145241844	0.877632465289818
Merged-chr2-181548419-4	chr2	181548300	181548500	+	867.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271584, intron 4 of 5)	intron (NM_001271584, intron 4 of 5)	27915.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	3.74585883846264	4.08627638336904	4.03960306808025	4.2471507841542	3.89671079309204	3.48379720565298	3.55836817188692	3.89907239915721	-0.913453574625951	0.06413379213719	0.269066320319053
Merged-chr10-116951141-1	chr10	116951041	116951241	+	637.0	f0_balb.idr	promoter-TSS (NM_001003950)	promoter-TSS (NM_001003950)	579.0	NR_038026	71086.0	Mm.214134	NR_038025	ENSMUSG00000112627	4933412E12Rik	-	RIKEN cDNA 4933412E12 gene	ncRNA	3.86538899352435	3.36684113468315	3.38547968113683	3.38515692749265	3.4019957881862	3.31034072793083	3.25229735959873	3.54764155298614	-0.435464411947846	0.419520591627144	0.712640132742369
Merged-chr2-155826703-4	chr2	155826600	155826800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010579, exon 1 of 6)	5' UTR (NM_010579, exon 1 of 6)	225.0	NM_010579	16418.0	Mm.271674	NM_010579	ENSMUSG00000027613	Eif6	1110004P11|AA408895|CAB|Itgb4bp|eIF-6|imc-415|p27(BBP)|p27BBP	eukaryotic translation initiation factor 6	protein-coding	6.69143289045869	6.37537325206196	6.27938244835771	6.61570874745545	7.21579478094797	6.92960140925431	7.04884499650532	7.24721659917406	0.859779223048964	5.25700659573885e-05	0.00118301761769869
Merged-chr3-121330381-4	chr3	121330267	121330467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155539, intron 2 of 2)	intron (NR_155539, intron 2 of 2)	38627.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	5.21999345165905	4.98449789501508	5.37444138006869	5.51365563664901	5.68213369287756	5.11011141205295	5.4037732911019	5.48127728211481	0.257992285835584	0.413375978092765	0.708338880200893
Merged-chr18-66478318-4	chr18	66478239	66478439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19735.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	7.67369353340524	7.9920445926208	7.98215239415379	7.76915410356655	7.92877739760649	8.25156319766279	8.03549890912542	7.94927671368252	0.238784714417748	0.174193868401895	0.468536831756677
Merged-chr10-81402324-1	chr10	81402224	81402424	+	1000.0	f0_balb.idr	intron (NM_026756, intron 8 of 8)	intron (NM_026756, intron 8 of 8)	-7251.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	5.22249332642161	4.6240272780065	5.5456660900574	5.58999705675236	4.9268666998121	4.88545106329216	5.06965524672058	5.36410680672073	-0.432430099051652	0.245591539552182	0.556700748185878
Merged-chr8-94838382-4	chr8	94838290	94838490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026452)	promoter-TSS (NM_026452)	-27.0	NM_026452	67914.0	Mm.169234	NM_026452	ENSMUSG00000031782	Coq9	2310005O14Rik|C78387	coenzyme Q9	protein-coding	7.76427111939378	7.95172046161541	7.70997359714951	7.67920096841565	7.51430301887177	7.61657748104832	7.82462559336052	7.62081076864694	-0.174363747746487	0.321718700087083	0.633233286881578
Merged-chr8-61579012-4	chr8	61578939	61579139	+	860.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	12130.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	4.50050368676947	4.30847225271078	4.41668460464712	4.02086968422027	4.70468143790518	4.5909382041765	4.76853838429751	4.41388740896716	0.746293390436557	0.0514535708853659	0.235631070066877
Merged-chr3-119779407-4	chr3	119779291	119779491	+	980.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310711, intron 2 of 13)	L1ME2z|LINE|L1	3997.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	4.66614739120826	4.82685786120181	4.99507022249171	5.27402604388122	4.58167420743295	4.80130466936111	4.68599851922434	4.8200581590147	-0.534622725292549	0.133266103734927	0.406571115249216
Merged-chr11-115048457-4	chr11	115048352	115048552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199201).2	promoter-TSS (NM_199201).2	-157.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	6.98325947423175	7.26463587605458	7.0416522622787	6.95799432827357	6.2856664502316	6.08888622864188	6.05222811625472	6.277195202581	-1.27041114704486	6.17444653423741e-09	3.42549438706535e-07
Merged-chr10-80848738-3	chr10	80848637	80848837	+	992.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ZP3AR|Satellite|Satellite	-4698.0	NM_001013758	237403.0	Mm.40213	NM_001013758	ENSMUSG00000051067	Lingo3	AI851712|LERN2	leucine rich repeat and Ig domain containing 3	protein-coding	4.57772669453851	4.98291210413717	4.42358340222825	4.23301723470989	4.18846615017308	3.99271714781006	4.13167376461187	4.14681300390493	-1.10725445201353	0.0106708429040102	0.0827746215196753
Merged-chr7-35318369-4	chr7	35318247	35318447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026181)	promoter-TSS (NM_026181)	93.0	NM_026181	67471.0	Mm.358705	NM_026181	ENSMUSG00000063808	Gpatch1	1300003A17Rik|ECGP|Gpatc1	G patch domain containing 1	protein-coding	6.18430333803814	6.0135532240538	6.64792983098991	6.1642184472148	5.94368999955873	5.87640034792523	6.05375430932813	5.99404405195095	-0.461785952693812	0.0712038048023186	0.286259001526362
Merged-chr3-15586785-3	chr3	15586679	15586879	+	660.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-11714.0	NM_001173460	668101.0	Mm.423523	NM_001173460	ENSMUSG00000095028	Sirpb1b	-	signal-regulatory protein beta 1B	protein-coding	2.27782043576536	2.30515745253347	2.5112548748767	2.12676313458287	2.97180040626363	2.82267108913407	2.63739871657248	2.88243738916326	3.23756549406567	2.7884066418148e-05	0.000681111861213919
Merged-chr17-56810443-4	chr17	56810362	56810562	+	965.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009056, intron 1 of 16)	intron (NM_009056, intron 1 of 16)	20546.0	NM_009056	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	4.32089406100748	4.63235141542462	4.52147757923108	4.75918720542856	5.13665831875087	4.60810347307295	5.14102166561054	5.36956267677572	1.02708741817256	0.00577191541808001	0.0528070909438968
Merged-chr2-154890276-3	chr2	154890183	154890383	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026030, intron 1 of 8)	intron (NM_026030, intron 1 of 8)	2623.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	3.15460975784913	3.57590766672437	3.28214924448285	3.34227684382488	3.44710153804075	3.62030174624123	3.27056256334052	3.33970427738278	0.259551284156927	0.626100073224726	0.84026579768959
Merged-chr5-43391920-4	chr5	43391849	43392049	+	906.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123620.0	NM_001135172	109323.0	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding	4.03922233519785	4.19173300000624	4.71087907077159	4.25154449280083	4.10766803906491	4.22036849172232	4.35702988081171	4.73964894562666	0.133746635563798	0.757870773043628	0.90490952828044
Merged-chr13-13553863-4	chr13	13553771	13553971	+	971.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-36538.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	4.83890677732137	4.77383873974217	5.22833001234264	5.38948354004653	5.44899590101165	5.20674592947551	5.00671315675324	5.42147814984956	0.343998531350654	0.314608914073933	0.626540369746015
Merged-chr9-64740842-4	chr9	64740722	64740922	+	934.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3066.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	5.44394347019278	5.21044031514396	5.20088663611768	5.19931515703612	4.76268143645177	5.24888018603819	4.53291732274939	4.77573520692515	-0.803830326040482	0.0180123003258818	0.119220524911284
Merged-chr4-116336470-3	chr4	116336365	116336565	+	686.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042743, intron 6 of 29)	RLTR12B|LTR|ERVK	113718.0	NM_001355586	18710.0	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55|p55pik	phosphoinositide-3-kinase regulatory subunit 3	protein-coding	3.37718815547659	3.33312166831275	3.01882521689193	2.72556015664017	3.35615118435943	3.26298914668539	3.41375814575839	3.14795993178325	0.612215063795954	0.318135988168321	0.63003757714634
Merged-chr1-155412910-4	chr1	155412817	155413017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 1 of 14)	intron (NM_011273, intron 1 of 14)	4527.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	5.74742944643922	5.56398903112203	5.67453281368155	6.24863266916432	5.76333405820766	5.25468704931312	5.81077052028201	5.18295273640167	-0.515513160692575	0.114630309481577	0.374533599886066
Merged-chr11-97660417-4	chr11	97660321	97660521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2991.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	7.1312016512494	7.1582556309902	6.70636690053042	6.63990583346178	7.37628308891308	7.46274940915927	7.58144218754305	7.27046602468898	0.689798947610678	0.00117678500413703	0.0153298645332119
Merged-chr7-122477179-2	chr7	122477079	122477279	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 5 of 16)	intron (NM_001316672, intron 5 of 16)	188054.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	2.72384481758132	2.68511380689502	2.8970243290118	2.48375516315893	2.80988030601373	2.55406216396222	2.71424559884301	2.45008447527328	-0.274735713984385	0.694479813917031	0.87596715638729
Merged-chr7-16167605-4	chr7	16167524	16167724	+	884.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44A|LTR|ERVK	-7771.0	NM_001277988	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	4.00558003891128	4.06981019490023	4.00614483028919	4.18085675299666	4.05704987281041	4.23303808337903	4.31064140286627	4.61837306394237	0.5923718111673	0.155406935604236	0.440985819425086
Merged-chr8-66444384-4	chr8	66444298	66444498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	42132.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	6.26542963477237	5.55870981864893	5.96804286941162	6.2299178662564	5.41749400099019	5.53856699036695	5.85062907893779	5.62780576173329	-0.696967068984572	0.0167310107336865	0.113339537239035
Merged-chr3-30847704-4	chr3	30847608	30847808	+	876.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8242.0	NM_001134386	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	3.30840810580566	3.21637309313582	3.7789881155871	3.75610023124768	4.08669932137584	3.79551522199939	3.66123202592933	3.91671000433007	0.973741938388025	0.071386731737147	0.286751477331737
Merged-chr8-36993575-4	chr8	36993459	36993659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039220)	promoter-TSS (NM_001039220)	-16.0	NM_001039220	621080.0	Mm.373292	NM_001039220	ENSMUSG00000074384	AI429214	-	expressed sequence AI429214	protein-coding	6.80353491028317	6.78273176303426	6.60710956855193	6.89769261599612	7.04587277043189	6.73436280444529	6.92789023857185	6.84138540884753	0.159906306346383	0.43069569816283	0.721216765724688
Merged-chr5-65493393-4	chr5	65493282	65493482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133697)	promoter-TSS (NM_133697)	-547.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	6.25097403548917	6.75853009958951	6.53626866256568	6.86447371680318	6.90571146683339	6.94421004676689	6.86694175713984	6.56508485797543	0.269864419619857	0.247944442477898	0.55911412865941
Merged-chr9-37529779-3	chr9	37529678	37529878	+	937.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136939, intron 1 of 6)	intron (NR_136939, intron 1 of 6)	1689.0	NM_027102	69524.0	Mm.41751	NM_027102	ENSMUSG00000001946	Esam	2310008D05Rik|Esam1|W117m	endothelial cell-specific adhesion molecule	protein-coding	3.95014370368601	3.93349255612169	3.76183406586567	3.56234899311643	3.81474243167105	3.65707590359777	3.4667550309248	3.75965485690982	-0.347264960064174	0.475617207798033	0.752388549309966
Merged-chr17-6816399-4	chr17	6816299	6816499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33619.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	7.5197220731501	7.98280133132128	7.86083165848356	7.30949492624628	7.60748704888407	7.72601026605827	7.62405975242797	7.28144485202014	-0.157003756304317	0.471634358824397	0.750006800577593
Merged-chr2-167717428-4	chr2	167717371	167717571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26294.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	6.6849015317294	6.6288759215913	6.67166675651845	6.76175700757609	6.2626792817577	6.02279440147766	6.46780656231697	6.49642117266938	-0.535478089802745	0.0155065221780455	0.107388474616764
Merged-chr11-114858844-3	chr11	114858746	114858946	+	776.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147217, intron 1 of 3)	intron (NM_147217, intron 1 of 3)	6816.0	NM_147217	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	3.76391059081984	4.07766874265123	3.51917204723125	3.39567645646629	4.26147760913476	3.82877055238062	4.17126148112205	4.18847949575826	1.15222584654395	0.0179145107250026	0.118805269625916
Merged-chr6-30403680-4	chr6	30403596	30403796	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311087, intron 1 of 8)	intron (NM_001311087, intron 1 of 8)	1841.0	NM_001311087	76788.0	Mm.277308	NM_029742	ENSMUSG00000029775	Klhdc10	2410127E18Rik|AI593221|mKIAA0265	kelch domain containing 10	protein-coding	4.43783017242532	4.88020221850145	4.39443452322942	4.49451182694559	4.68856327504345	4.56882472113842	4.46072469814751	4.09128537579373	-0.199089973143677	0.619580941485703	0.836720209857499
Merged-chr7-142342374-4	chr7	142342270	142342470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177265, intron 3 of 3)	L1MB3|LINE|L1	29889.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	5.93761717087282	6.01111636314836	5.96254533429749	5.74565476611289	6.40325387522305	6.60646090059001	6.63463995628391	6.3074780907133	0.893600055424897	0.000118410399113645	0.00233342574709583
Merged-chr3-146445024-4	chr3	146444929	146445129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5438.0	NM_028836	74245.0	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	6.41303081924527	6.20884664569924	6.7724229366581	6.64646492229492	6.31354246572531	6.47890161298988	6.75133825278809	6.82060348845968	0.101528999524366	0.678646170281078	0.8681208945003
Merged-chr7-73451830-4	chr7	73451732	73451932	+	853.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081345, exon 33 of 39)	exon (NM_001081345, exon 33 of 39)	-76058.0	NR_040324	319783.0	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	4.96789659983409	4.80092428941358	5.22986368321473	5.10972524067766	4.55629453046371	4.59220297916985	4.44002232823225	4.54918063074261	-1.05855960801812	0.00230232597338065	0.0260743453395801
Merged-chr16-33251546-5	chr16	33251483	33251683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_080557, exon 1 of 14)	exon (NM_080557, exon 1 of 14)	127.0	NM_080557	69150.0	Mm.28196	NM_080557	ENSMUSG00000022808	Snx4	1810036H14Rik|AI037066	sorting nexin 4	protein-coding	5.96748465751943	6.43156671732418	6.24187719313696	5.92429232130078	5.42271771078588	6.09994113683223	5.44022584908125	5.80169721938505	-0.707344924846946	0.0159797101849128	0.109578014571475
Merged-chr3-95135846-4	chr3	95135761	95135961	+	968.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153121, intron 1 of 2)	intron (NM_153121, intron 1 of 2)	1773.0	NM_153121	217779.0	Mm.341945	NM_153121	ENSMUSG00000053769	Lysmd1	2610022K04Rik|AI415311	LysM, putative peptidoglycan-binding, domain containing 1	protein-coding	4.78572270873562	4.92480841335875	4.40366874181927	4.67795152946495	4.93617351004729	4.76356434171762	4.83467823063384	4.78333353470073	0.256037600657234	0.4566123633804	0.739948846451796
Merged-chr4-97758143-4	chr4	97758033	97758233	+	824.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-19493.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	3.54166751162065	3.41725199399447	3.90069107820571	3.42444043457581	3.48077946141027	4.06857754993603	3.64005850044723	3.80564856404405	0.558814898139437	0.27449111394537	0.586269069180745
Merged-chr1-131294177-4	chr1	131294096	131294296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 21 of 22)	intron (NM_001081011, intron 21 of 22)	-14633.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	5.72103322778303	5.6942073950972	6.22451199729466	6.03491570939287	5.51625195544337	5.70643859052257	5.98798637817172	5.76839484407558	-0.311521962905687	0.261886547031262	0.573846279126284
Merged-chr11-106273047-4	chr11	106272938	106273138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130187)	promoter-TSS (NM_001130187)	-66.0	NM_001130187	83796.0	Mm.21772	NM_031878	ENSMUSG00000078619	Smarcd2	AW322457|Baf60b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding	8.43364416903402	8.71366921011973	8.11369093912503	8.06135652721011	8.75811886379427	8.8037602549054	8.46091256163931	8.42436536039437	0.33842628463904	0.0949548434788729	0.337196875888081
Merged-chr14-25473167-4	chr14	25473120	25473320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	14035.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	7.25313773953288	7.38361494301117	7.32671945178952	7.40130115447168	7.10158947884568	6.8646302576148	7.2495320431846	7.05410359401629	-0.365180099559673	0.050671631536491	0.23339651366127
Merged-chr16-55969324-3	chr16	55969222	55969422	+	921.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024218, intron 3 of 5)	B1_Mm|SINE|Alu	3047.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	3.23556383181903	3.74023608643066	3.23592667015098	2.98891204468649	3.88830067311184	3.54467934528636	3.81400891829181	3.53877783727783	1.23894649746604	0.0282433531202266	0.16093534166668
Merged-chr17-27547427-4	chr17	27547320	27547520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9154.0	NM_001166536	15361.0	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	6.42629990596547	6.6451677593301	6.24823870297396	5.78253498141609	6.45864438593073	6.34550631184762	6.32616665523071	6.03501311401378	0.00438455977278695	0.987412206707467	0.995271042049364
Merged-chr5-123132640-6	chr5	123132467	123132667	+	887.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175092)	promoter-TSS (NM_175092)	62.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	4.26796733708623	4.04924699324973	3.95699634731494	4.05905528612553	3.91502121254664	4.07925349736234	3.98953262816583	3.90335374335889	-0.311343271042869	0.45958450328889	0.742078333053983
Merged-chr17-10370708-7	chr17	10370592	10370792	+	996.517883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46090.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	4.41880573760225	4.41011437242778	4.81436129600016	4.39573793578629	4.09237255644106	4.41488846059924	4.22048586300322	4.41667949124971	-0.54089192591647	0.171855077234254	0.465124394984604
Merged-chr19-8984570-4	chr19	8984484	8984684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4700.0	NR_104460	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	7.8335612819933	8.01602857692302	7.10206084920151	7.02639781007205	8.04610517426098	8.16352449084453	7.5208965583343	7.51600917600233	0.367267978035407	0.186558261776445	0.484582803058514
Merged-chr13-103918600-3	chr13	103918501	103918701	+	743.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	1985.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	3.17081787160144	3.34981350129868	2.90248128053773	3.14510422467864	3.39750513061126	3.28242913979307	3.16000689268045	3.44225091893687	0.640325834636672	0.253949596953692	0.565239500064592
Merged-chr4-147809799-4	chr4	147809703	147809903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127189)	promoter-TSS (NM_001127189)	-15.0	NM_001127189	100041677.0	Mm.327194	NM_001127189	ENSMUSG00000078495	Zfp984	Gm13157	zinc finger protein 984	protein-coding	7.06958091948979	7.33278635963133	6.91574434597058	6.0573892236262	7.44628378533605	7.63206320405058	7.44461237432115	7.02881954821088	0.663579751548855	0.0214692206694672	0.134180967515461
Merged-chr2-122154085-4	chr2	122154005	122154205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026251, intron 2 of 17)	intron (NM_026251, intron 2 of 17)	6418.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	5.24647458218571	5.36502444701121	5.24737370418428	4.68284492035256	5.82770828709892	5.35891823354172	5.6492790303973	5.30629200041044	0.747094847831625	0.0241138469387176	0.144917083466029
Merged-chr3-105841747-4	chr3	105841654	105841854	+	875.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	26187.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	4.00027287173802	3.65279493721045	3.89550663213041	4.26961785661242	4.37271205838467	4.07222992986517	4.40572384310024	4.09583568853308	0.654472633030911	0.152807129021317	0.43723503121918
Merged-chr5-44052758-3	chr5	44052671	44052871	+	916.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163578, intron 3 of 22)	intron (NM_001163578, intron 3 of 22)	41997.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	3.90841932301992	3.82047475532817	4.20214818130885	3.75865320462962	4.94130865426512	4.33721715431115	5.19275509977445	5.3535503938559	2.46318480541435	7.23965031893264e-09	3.95784231990251e-07
Merged-chr16-16983336-4	chr16	16983238	16983438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011949)	promoter-TSS (NM_011949)	-44.0	NM_001357115	26413.0	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	7.28380289043714	7.51701610224416	7.0028261002	7.29579416791002	7.37811252289209	7.12681128189117	7.33976144454714	7.27997915561933	-0.0036295181267556	0.985195631815759	0.994599606799618
Merged-chr8-61553866-2	chr8	61553766	61553966	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	37303.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	2.72337342174418	2.78614513660497	2.7991967117716	2.66926818609709	3.32884205703838	3.11725704250774	3.22179660503684	3.47463418303984	2.35942278381002	7.74419997243904e-05	0.00163325751063182
Merged-chr4-130787721-4	chr4	130787580	130787780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4857.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	7.24176250605831	7.46495302705601	7.28524926986302	7.57829750853174	7.11674720604877	6.66643183444036	7.20676093822869	7.05323347919802	-0.511479698179495	0.0134441498513467	0.0972797745521001
Merged-chr4-32369157-1	chr4	32369057	32369257	+	748.0	f0_balb.idr	Intergenic	Intergenic	-48278.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	2.89196575770392	2.84949840715039	3.11530241487177	3.13783734362161	2.73338119051464	2.56699401223329	2.99675813770752	2.69433499134087	-1.15718360736711	0.0869198325521422	0.321546009107059
Merged-chr15-59647661-4	chr15	59647554	59647754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144549)	promoter-TSS (NM_144549)	-1000.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	6.06750436153749	5.66225270909637	5.96460220552043	5.81374544985801	5.93829806964207	5.95408368926402	6.05718873042833	5.79878785545594	0.102373418396469	0.682630003313908	0.869969330045886
Merged-chr1-64199047-4	chr1	64198937	64199137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77648.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	6.18448196984783	5.8549900334568	5.77961620670545	6.18396422402445	6.1689272683812	6.37929901265481	6.09498030394921	6.23767643082379	0.300127481832611	0.223838803410634	0.532009556162866
Merged-chr12-108937046-4	chr12	108936944	108937144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	42772.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	7.47447066512662	8.07167371314373	7.91232747255997	8.04646907686455	7.30534886394534	7.79310685447965	7.77308425370993	7.53772352163966	-0.381871116407145	0.0697676127398349	0.282704594512622
Merged-chr19-32594124-3	chr19	32594021	32594221	+	963.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1594.0	NM_001201470	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	4.35265099005851	4.42154200650383	4.13920767126517	4.41269295677157	4.20895983217052	3.88415765282574	3.86737662212419	3.988821512527	-0.85966041200547	0.0434401077106491	0.212102032290869
Merged-chr8-124857248-3	chr8	124857178	124857378	+	981.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025615, intron 2 of 6)	MurERV4-int|LTR|ERVK	5751.0	NM_025615	66523.0	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	4.1071403585089	4.33425190312716	3.93830798474133	4.50131117636323	2.87234692206829	3.12111056469525	3.07589064078833	3.08332712273287	-7.07079788861782	8.94388057077319e-11	6.90473400376426e-09
Merged-chr5-92603585-3	chr5	92603499	92603699	+	742.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175096, intron 1 of 1)	intron (NM_175096, intron 1 of 1)	548.0	NM_175096	52331.0	Mm.21965	NM_175096	ENSMUSG00000047963	Stbd1	D530019K15Rik|D5Ertd593e	starch binding domain 1	protein-coding	3.57517773362062	3.617731900012	3.67870277034839	3.37022712915077	3.34483512874415	3.69352438072502	3.33009526180533	3.77161822440786	-0.0405367441538411	0.937406092005387	0.977334367260951
Merged-chr10-111570800-1	chr10	111570700	111570900	+	759.333313	f0_balb.idr	Intergenic	Intergenic	23473.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	3.62102759293588	3.6112898064195	3.71998817426386	3.57166377538004	3.23407447262767	3.45058595976804	3.38655816097519	3.71770390800109	-0.584695007564507	0.253385342637174	0.564721751011949
Merged-chr17-84957798-4	chr17	84957689	84957889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159496)	promoter-TSS (NM_001159496)	-79.0	NR_027930	68531.0	Mm.249695	NR_027929	ENSMUSG00000097047	1110020A21Rik	2600015P10Rik	RIKEN cDNA 1110020A21 gene	ncRNA	9.62161267040204	9.69251273510368	9.72520139220637	9.5979324286865	9.80348566055562	9.90768573493441	9.97792152466736	9.73254775177068	0.243373793954563	0.0720390879592559	0.288395401678958
Merged-chr14-30672118-4	chr14	30671999	30672199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177815, intron 6 of 12)	intron (NM_177815, intron 6 of 12)	17724.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	5.87736467828157	5.92691018589433	5.56269834019529	5.85863830097457	6.09402181559687	6.26571916937267	5.87141065840219	5.87421544323904	0.345566749175409	0.175705508431149	0.470550643100841
Merged-chr19-45236728-4	chr19	45236644	45236844	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1508.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	5.14854008958752	5.74500562871186	5.21256510378306	4.76326027172509	4.61610523705957	5.29222389546177	5.33065842484549	4.93562468409891	-0.35966412123915	0.355502604673236	0.662139415376708
Merged-chr18-34193220-4	chr18	34193112	34193312	+	875.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27772.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	5.0419108922092	4.56218072656397	5.04277567880634	4.91655174780435	4.94005591727241	4.74241096991843	4.8558792480658	4.31850115703166	-0.325061287567085	0.380587748790454	0.682959506520613
Merged-chr19-60820569-2	chr19	60820479	60820679	+	681.833374	f0_balb.idr|f1_c57bl6.idr	intron (NM_026437, intron 3 of 8)	intron (NM_026437, intron 3 of 8)	9024.0	NM_001347464	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	4.11200047059642	3.89369256802704	3.49635934769839	3.70977436098764	3.49461687580788	3.67328733446199	3.54240228314249	3.49460047725756	-0.835479134450685	0.0964923987219607	0.340348486057009
Merged-chr5-74671654-2	chr5	74671553	74671753	+	996.083374	f0_balb.idr|f1_balb.idr	intron (NM_001159578, intron 1 of 12)	intron (NM_001159578, intron 1 of 12)	6219.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	5.51709602867961	5.21713538246243	5.025128905142	5.1596103547948	3.24396823707037	3.6153839470833	3.54931815170169	3.71420544787391	-6.56235621849855	1.74458798988868e-11	1.51436620161325e-09
Merged-chr18-31789079-4	chr18	31788971	31789171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357480)	promoter-TSS (NM_001357480)	-54.0	NM_001357480	69241.0	Mm.279898	NM_027002	ENSMUSG00000024258	Polr2d	2310002G05Rik|2610028L19Rik|HSRBP4|RBP4	polymerase (RNA) II (DNA directed) polypeptide D	protein-coding	7.49599200137813	7.53864269845098	7.25125859338098	7.69492217112074	7.49495843906901	7.68365481457367	7.55837189837251	7.44469391791497	0.0391326307044367	0.833357876433241	0.936258291032288
Merged-chr7-19072343-4	chr7	19072239	19072439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031255, intron 5 of 5)	B1F|SINE|Alu	-3861.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	5.78025484084437	5.85084152766283	5.92911702227681	5.84587386098694	6.32160770823397	6.41131975362885	6.29266576152149	5.94792636671334	0.629276050765829	0.00880468049628912	0.0720106116333866
Merged-chr6-28807218-3	chr6	28807117	28807317	+	798.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	24530.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	3.7961398809	3.83867337766351	4.01725551709538	4.05925898435223	3.0329476622009	3.52420106158544	3.68090621145049	3.19643553495814	-1.86543983882174	0.00123225738836019	0.0159011690801468
Merged-chr2-18608977-4	chr2	18608872	18609072	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63490.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	4.88968784610596	4.82284527008678	4.74332380938694	4.76532933771954	4.81549476575624	4.56870691357809	5.02820637921628	4.95475625168605	0.104965267103321	0.752894417146686	0.902709829162887
Merged-chr14-32168395-4	chr14	32168304	32168504	+	983.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019744, intron 1 of 9)	intron (NM_019744, intron 1 of 9)	2615.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	5.09188895382859	4.83097286454711	5.79359652665126	5.53826110175558	5.16068301042674	5.04657530658758	5.31715032351735	4.98087449435863	-0.433491426110047	0.22245086854434	0.530502983049462
Merged-chr19-41914227-3	chr19	41914127	41914327	+	902.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023418, intron 1 of 3)	intron (NM_023418, intron 1 of 3)	2356.0	NM_023418	18648.0	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	3.93552627328859	3.99748117600731	4.06693158299722	3.53843676995691	3.48979918604304	3.85844906117934	3.61216806938009	3.73562190485561	-0.641622803998644	0.195803798998746	0.496672200168623
Merged-chr19-31834452-4	chr19	31834346	31834546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-34315.0	NM_001081074	69865.0	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	5.64096445851371	5.73852681980867	5.50324331800055	5.68134308254056	6.04127556208865	5.62072012323337	5.68948241205507	5.68942439119416	0.226770234504393	0.396057515098625	0.695037416781232
Merged-chr19-57571948-3	chr19	57571853	57572053	+	695.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-39081.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	3.30645588779552	2.96804782097402	3.4670447346551	2.89073243097965	3.39174763074899	3.4786922300987	3.29374242260211	3.24707980946191	0.688247790815524	0.235218274039233	0.545195411514106
Merged-chr5-99227759-4	chr5	99227721	99227921	+	826.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 10 of 13)	intron (NM_181318, intron 10 of 13)	25106.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.67635824709656	3.74399452516039	3.45204985416727	3.22844415337211	3.76223651539475	3.94483191604259	3.60942923111388	3.51009194022289	0.580516124234282	0.25809380436292	0.569939468890524
Merged-chr8-105606706-4	chr8	105606593	105606793	+	964.589294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081241, intron 1 of 21)	intron (NM_001081241, intron 1 of 21)	1464.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	4.48296586271523	4.40415019048749	4.67719086823858	4.44771738824217	4.4425302946997	4.57116237806667	4.54343541024617	4.48082123597677	0.014807129138257	0.967099655601025	0.988455138025123
Merged-chr17-29371200-4	chr17	29371101	29371301	+	987.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159538, intron 9 of 15)	intron (NM_001159538, intron 9 of 15)	10287.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	4.57566088206283	4.54611635965542	4.26697287387098	4.56314297712485	4.81490375523852	4.7854681179181	4.34409842238988	4.31334745990194	0.20922302401649	0.587615638989246	0.819312312783849
Merged-chr16-57558404-4	chr16	57558279	57558479	+	947.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	9137.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	5.33769382179869	5.722548665782	5.39343894379325	5.0820241890764	5.42060900635038	5.05003678278814	4.58271526426202	4.6002588907578	-0.787699142137144	0.0417241341008341	0.206883044165711
Merged-chr14-74908486-4	chr14	74908401	74908601	+	964.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	39376.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	4.77762067237358	4.75579522345565	5.01266085144205	4.75581529514586	4.72473664559248	4.66839200495705	4.55913020445641	4.73795553976658	-0.307268167319842	0.363632454508697	0.668649715510373
Merged-chr11-69991003-4	chr11	69990911	69991111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019749)	promoter-TSS (NM_019749)	-359.0	NM_019749	56486.0	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	5.99654827258499	6.14984048891316	5.53934264040267	5.49928817834245	5.91731975815561	6.12938944983417	6.19891667880036	6.0558097747639	0.410855596940613	0.141180170769476	0.417999924725474
Merged-chr5-150216262-4	chr5	150216172	150216372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43658.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	5.69369959962091	5.66250096839687	6.0465263198313	5.9760513551351	7.06228131580675	7.12233266398134	7.18165074651327	6.85661764959122	1.73931177796927	3.89817645767427e-14	5.49442182338212e-12
Merged-chr12-4599950-3	chr12	4599873	4600073	+	932.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198969, intron 1 of 16)	intron (NM_001198969, intron 1 of 16)	6965.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	3.70664709183999	3.66765801257162	4.00227381189048	4.28356268067161	3.47940229413635	3.70955771078255	3.74611618208168	3.90889273116966	-0.694350217180203	0.167966343041191	0.459915036621355
Merged-chr19-43520545-4	chr19	43520444	43520644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 1 of 8)	intron (NM_010324, intron 1 of 8)	4061.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	6.32771125804371	6.43493980275109	6.58430395193685	6.78083515835102	6.92454295449741	6.85666737327637	7.03572349005604	7.12119940910266	0.602519283502998	0.00550497421753134	0.0510007236534769
Merged-chr6-120172421-4	chr6	120172333	120172533	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	MLT1F|LTR|ERVL-MaLR	-21390.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	6.9048400527188	6.4643434757099	6.87228844789822	6.73697807362805	5.46307024058163	5.78835830357744	5.34078870066911	5.40019198309531	-1.95223244889439	5.75490942530824e-14	7.89265314034711e-12
Merged-chr11-22617725-4	chr11	22617676	22617876	+	924.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105493.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	4.42652305444753	4.39096945364339	4.6982309560441	4.63728660714138	4.47190535381476	4.36928342879116	4.52939876416481	4.33526035896211	-0.270581462435028	0.463420130539635	0.744717708705228
Merged-chr1-170898607-4	chr1	170898501	170898701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13061.0	NM_023173	80915.0	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	6.26186209914574	6.16205262466586	6.51606208345065	6.65251546424248	5.88883534353264	5.89019985877183	6.15415848004898	6.22054349222916	-0.582056398855295	0.0202883791896516	0.129238101158064
Merged-chr2-43673798-4	chr2	43673700	43673900	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289593, intron 12 of 12)	intron (NM_001289593, intron 12 of 12)	-75024.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	4.84234048166177	5.11250653747422	4.54557546612238	4.67911490017555	5.27471737750771	4.94185094562015	5.36264914655743	4.76164715331718	0.597366455451398	0.0922001598220245	0.33215483226905
Merged-chr1-133118357-3	chr1	133118259	133118459	+	667.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-12807.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	3.93385126063975	3.87478794074611	4.08862133566686	3.3442679793405	4.16650647971824	4.16727579762247	4.75723284066948	4.30822976015572	1.41031422093675	0.00330082929034224	0.0343996673583119
Merged-chr14-69853075-4	chr14	69852985	69853185	+	985.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 3 of 6)	intron (NM_028560, intron 3 of 6)	12678.0	NM_028526	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	5.06325719033068	5.13771563820818	4.67292016908334	4.93293148144541	5.47426066131875	5.02158112307782	5.33621866067213	5.09394654810114	0.549912344750356	0.0885751088314702	0.324772702481544
Merged-chr17-8140435-4	chr17	8140354	8140554	+	975.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026611, intron 4 of 8)	intron (NM_026611, intron 4 of 8)	7334.0	NM_001083938	100037283.0	Mm.426736	NM_001083938	ENSMUSG00000095687	Rnaset2a	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2A	protein-coding	5.5385927637086	5.807339490415	5.49091368919089	5.11307643661558	4.61484412604663	4.95987360224681	4.9530911632403	4.58958125412332	-1.37468380738141	8.95310101422956e-05	0.00185038553162557
Merged-chr5-122061100-3	chr5	122060985	122061185	+	900.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11234.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	3.47562703466891	3.57248813690859	3.52985855223726	3.51218593150457	3.51876056689674	3.34666177748694	3.56668487429575	3.35967954473563	-0.226214789137725	0.64905485305276	0.852536691167674
Merged-chr6-97179160-4	chr6	97179057	97179257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081111)	promoter-TSS (NM_001081111)	-33.0	NM_001081111	232286.0	Mm.30893	NM_001081111	ENSMUSG00000030059	Tmf1	7030402D04Rik|Gm153|Tmf1`	TATA element modulatory factor 1	protein-coding	7.1917521193987	7.44947962399897	6.86132762186276	7.38532605878092	7.26964786076956	7.02492009175441	7.51393566966152	7.05820722373493	-0.0212278455717293	0.92331097337492	0.971648071395079
Merged-chr10-78086786-4	chr10	78086678	78086878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17410.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	6.72044801684846	6.7866397075142	7.14969680843303	6.77328792302976	6.88442959996716	6.57692171094206	6.89431844166203	6.9621323595745	-0.0308997255396626	0.885364608243922	0.956984644600969
Merged-chr4-53469233-4	chr4	53469135	53469335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133891, intron 1 of 15)	L1MB8|LINE|L1	28822.0	NM_133891	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	5.91771990372211	6.08555055419832	5.98542895406332	5.98485617264115	5.75779136809504	5.87227906793989	6.09709607883528	5.98116167780083	-0.110064518987673	0.650472610951999	0.853294802585927
Merged-chr3-51333447-4	chr3	51333355	51333555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	intron (NM_023502, intron 1 of 9)	7189.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	7.50808730394875	7.51252813781958	7.30009792482014	7.79971583885223	7.48501783611447	7.3405717096056	7.65889986497912	7.35842367336649	-0.114869971789992	0.558533686369049	0.803246237161323
Merged-chr2-14207014-4	chr2	14206919	14207119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081310, intron 3 of 3)	intron (NM_001081310, intron 3 of 3)	-22395.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	6.99112571376747	6.68819416212503	6.84961016408231	7.0075053279809	6.91363156698163	7.01231063968647	6.74450306620866	6.88530128465047	-0.00593516847882401	0.976461585426772	0.991548150951441
Merged-chr3-9251450-4	chr3	9251380	9251580	+	844.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177660, exon 1 of 6)	exon (NM_177660, exon 1 of 6)	913.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	3.90063413217183	3.46832280903245	4.26860841573624	4.10518395564553	3.87171852369973	3.80907480003022	3.78536260223087	3.74518783483272	-0.476352562044538	0.337267736724921	0.647019923788997
Merged-chr10-127513008-4	chr10	127512893	127513093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1946.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	6.24945700196008	6.06876680445733	5.74164664397589	5.76727872388091	6.10529337440304	6.46054154339878	6.04383305020017	6.2277517979968	0.388996970109349	0.131977125070236	0.404407457094184
Merged-chr4-149586364-2	chr4	149586264	149586464	+	997.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290989)	promoter-TSS (NM_001290989)	-104.0	NM_001290989	65945.0	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	3.36349275191996	3.50445004585081	3.3639450019781	3.14351272419403	3.38759571593426	3.36000484862608	3.29490481619071	3.2462573082478	-0.0562242870827206	0.915793607018527	0.968807935823848
Merged-chr11-34783179-4	chr11	34783113	34783313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	692.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	5.86141219263306	5.87113226313057	5.40210706683779	5.52656318321652	5.688404069871	5.54823709357864	5.43512450377556	5.51598540172558	-0.200146935410332	0.477180118733879	0.753376001937689
Merged-chr2-29624929-4	chr2	29624844	29625044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	5224.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	6.41183455601686	6.58350996012924	6.21147281430191	5.90169994985642	6.10412826865035	6.57115023423148	6.47721934261894	6.05986295456367	0.0382751318002699	0.887703706350618	0.957854987635003
Merged-chr5-33936447-4	chr5	33936360	33936560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011914)	promoter-TSS (NM_011914)	-202.0	NM_011914	24116.0	Mm.332320	NM_011914	ENSMUSG00000029111	Nelfa	Whsc2|Whsc2h	negative elongation factor complex member A, Whsc2	protein-coding	8.00861351646238	8.15416043499406	7.88919606235386	7.86377995400289	8.32067903128677	8.278687292178	7.94437320523028	8.08346736375025	0.241349908563918	0.167724692604732	0.459674907623916
Merged-chr16-20718601-3	chr16	20718504	20718704	+	629.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001356423, exon 1 of 5)	5' UTR (NM_001356423, exon 1 of 5)	427.0	NM_001356423	245841.0	Mm.288730	NM_145632	ENSMUSG00000021018	Polr2h	-	polymerase (RNA) II (DNA directed) polypeptide H	protein-coding	3.57143487345073	3.39078907246994	3.57194475973987	3.43439007621135	3.42438003263866	3.46400282286511	3.45285343321395	3.46435949455134	-0.130996656819693	0.791069940604252	0.918932146915872
Merged-chr2-131262449-4	chr2	131262356	131262556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355683)	promoter-TSS (NM_001355683)	-44.0	NM_001355683	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	7.75780862958034	7.61256669837612	7.31673873428961	7.57817251575468	7.46654510048503	7.64675468324588	7.72133241298281	7.37495315555954	-0.0260171379818214	0.890142572128095	0.958852987370432
Merged-chr15-81045544-4	chr15	81045434	81045634	+	959.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	59513.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	5.80008494932747	5.28000446629186	5.73488160398134	5.7640617240951	5.52569711697402	4.90259780824841	5.42929697676451	5.270834135867	-0.604320518938726	0.0547342521274509	0.24433548649607
Merged-chr7-116308392-4	chr7	116308340	116308540	+	874.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305185)	promoter-TSS (NM_001305185)	-64.0	NM_001305185	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	4.09040431728731	3.92570696788901	4.04518925002498	4.15630414443687	3.85295507564428	4.01809806323615	3.98077826272091	4.04275112801557	-0.253272232307384	0.54758047721536	0.796923572329989
Merged-chr10-94473563-3	chr10	94473446	94473646	+	759.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-41311.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	3.59327761794226	3.65717449220302	3.85314614910978	3.70557185124686	3.67836797570614	3.7105776513361	3.74007331768052	3.89685117236148	0.155257747059295	0.734432839199494	0.895054085885471
Merged-chr6-87998057-4	chr6	87997931	87998131	+	877.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16348.0	NR_026990	434064.0	Mm.371796	NR_026990	ENSMUSG00000084950	Gm5577	EG434064	predicted gene 5577	ncRNA	4.04148693997621	3.45191453337113	3.95053178271427	3.71955234194246	3.8461564965706	4.12106888833412	3.83578178110838	3.99465656026864	0.42014761881865	0.370685773955944	0.674895580110248
Merged-chr17-27025489-4	chr17	27025384	27025584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001251881, intron 2 of 6)	intron (NM_001251881, intron 2 of 6)	3143.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	6.87423219015272	7.11437513541876	7.06598408194267	7.05134788556277	6.97676369508881	7.01058519256379	6.68061167168695	7.01299032251527	-0.144334239703251	0.463929456002046	0.745115635831257
Merged-chr16-91647047-4	chr16	91646959	91647159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178880)	promoter-TSS (NM_178880)	-87.0	NM_001357351	14450.0	Mm.4505	NM_010256	ENSMUSG00000022962	Gart	Gaps|Prgs	phosphoribosylglycinamide formyltransferase	protein-coding	7.29970659791138	7.50618776754178	7.40331645330257	7.37159315364415	7.36773499486496	7.43468327735576	7.54861320289223	7.39818707569271	0.0525723460826724	0.762546030706203	0.9069792112766
Merged-chr3-41412885-4	chr3	41412785	41412985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80314.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	6.23702570832119	5.92311462424727	6.29468216885286	6.74352067037053	6.05284211103121	5.81569347807297	6.51095632359192	6.46202128348918	-0.161667684108118	0.582202966916634	0.816501953640427
Merged-chr16-4679177-4	chr16	4679056	4679256	+	978.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 1 of 27)	CpG	564.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	4.14788977595738	4.31940571329114	4.66873518621829	3.9644285758459	4.25820634870581	4.69075710381163	4.32615946338197	5.00570801395326	0.705119213405356	0.107629919257827	0.361777012790559
Merged-chr2-170251786-2	chr2	170251704	170251904	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4_19-int|LTR|ERVK	-104557.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	3.62659803436979	3.89069293730735	3.62710818299605	3.14823184659733	3.74012756285653	3.69045762436841	3.61235157348671	3.62504492901461	0.237777344658977	0.653014928616386	0.854895588497363
Merged-chr1-64338101-4	chr1	64338018	64338218	+	911.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-194686.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	4.67707877536759	4.89473690371428	5.10686620147775	4.81428181657594	4.40396566956373	4.64271648700155	4.7314891364277	4.36602056309623	-0.728751752785552	0.0429889588645608	0.210969980497193
Merged-chr4-99224982-4	chr4	99224863	99225063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175029, intron 7 of 10)	intron (NM_175029, intron 7 of 10)	30816.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	5.67539546343928	5.77741065465847	6.02500715003907	5.97077692560441	6.13871780475538	5.65319091727327	5.95315176702243	5.58957115282042	-0.0125070771683523	0.963559810357001	0.986979763151546
Merged-chr16-21216198-4	chr16	21216088	21216288	+	839.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010143, intron 3 of 15)	intron (NM_010143, intron 3 of 15)	11393.0	NM_010143	13845.0	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	3.55474434463363	4.06090122734036	3.9166696894614	4.11979297205126	3.97728283638119	4.28295608118326	4.3008949976712	4.1545725430643	0.614429099518196	0.17895920039286	0.474990468665321
Merged-chr11-53617399-4	chr11	53617290	53617490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027491)	promoter-TSS (NR_027491)	-52.0	NR_027491	16189.0	Mm.276360	NM_021283	ENSMUSG00000000869	Il4	BSF-1|Il-4	interleukin 4	protein-coding	5.99515133479217	6.12554198690378	6.12001069808804	6.45891719162624	5.90334561402682	5.47635891198501	5.89918002096432	5.92519709422523	-0.603211621320543	0.022713179837787	0.139241231411416
Merged-chr19-21384131-4	chr19	21384030	21384230	+	842.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	88531.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	3.93057424523303	3.93377529163213	4.81247680950618	4.2184060502012	4.27867800736141	4.26993822926124	4.21852687116376	4.27946864278023	-0.0246203523134071	0.956585246393892	0.984710341206589
Merged-chr5-43039614-3	chr5	43039540	43039740	+	905.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-193823.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	3.80702370349795	3.61332279523806	3.54806757731798	3.76688833428417	3.52020454793214	3.72111739972779	3.79105461191862	3.54622610766749	-0.148698955785956	0.755232880002394	0.903634896880696
Merged-chr12-84761888-1	chr12	84761788	84761988	+	1000.0	f0_balb.idr	intron (NM_023409, intron 2 of 3)	RSINE1|SINE|B4	11224.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	5.04049971081348	4.81435213730716	4.79532436383225	4.94080298960882	4.91333728547415	4.93094036393237	4.91797303518914	5.00565500088783	0.0742874039104879	0.814070109896411	0.928229016456815
Merged-chr10-67072077-4	chr10	67071966	67072166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 1 of 7)	intron (NM_178606, intron 1 of 7)	24922.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	5.16366513621606	5.20107639442104	4.95156527111836	5.18546578820025	5.28273569762047	5.49059967787495	5.233046456306	5.3146675026462	0.354887407930051	0.224811988117542	0.533254215616452
Merged-chr18-30508152-4	chr18	30508039	30508239	+	889.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	235274.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	4.51510515555228	4.35406029394632	4.06157191440155	4.49144635969434	4.34211169488289	3.94811925847329	4.5318447811295	4.6224524078653	0.0302498554026459	0.942633299872125	0.979213304897811
Merged-chr16-43655412-4	chr16	43655324	43655524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146325, intron 3 of 3)	intron (NM_001146325, intron 3 of 3)	8760.0	NM_001146325	100043314.0	Mm.390896	NM_001146325	ENSMUSG00000071552	Tigit	Vstm3	T cell immunoreceptor with Ig and ITIM domains	protein-coding	4.99947050990506	5.10136758313792	5.20177475939784	5.35238029458933	5.32684438213758	5.06398770436672	5.20664566074233	5.13458934680983	0.0162924923226833	0.957399778291797	0.984815156534365
Merged-chr1-20508113-3	chr1	20508011	20508211	+	932.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153179, intron 34 of 66)	intron (NM_153179, intron 34 of 66)	109946.0	NM_153179	241035.0	Mm.249253	NM_153179	ENSMUSG00000043760	Pkhd1	AI118496|AI182499|FPC|Tigm1	polycystic kidney and hepatic disease 1	protein-coding	4.69454553396846	4.37679644987424	5.03343937120331	5.30098024820067	3.70435515341279	3.74191606405612	4.11198048755646	4.23137888168548	-2.29894457777505	1.71296679417457e-06	5.70054680461123e-05
Merged-chr5-22896009-3	chr5	22895912	22896112	+	844.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359998, intron 1 of 3)	intron (NM_001359998, intron 1 of 3)	-149128.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	2.51837461048925	2.6707527356638	2.6023538624847	2.20398138097656	3.56018017828397	3.01344836281323	3.01067957940981	3.43355159222972	4.39068459284733	1.98988940489924e-07	8.02938423760333e-06
Merged-chr13-23761987-2	chr13	23761887	23762087	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178192)	promoter-TSS (NM_178192)	399.0	NM_013550	360198.0	Mm.221301	NM_013550	ENSMUSG00000069265	Hist1h3a	-	histone cluster 1, H3a	protein-coding	4.59178948298947	4.57372777512678	4.50388776731624	3.87657500036769	4.6421467077062	5.28502844312567	5.08816386621388	5.05246727840292	1.32384829337868	0.00101674004563616	0.0136206359751506
Merged-chr13-100832296-4	chr13	100832170	100832370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022885, intron 1 of 15)	intron (NM_022885, intron 1 of 15)	1157.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	5.04243125998003	4.96349975540322	4.93839386628667	5.14872893830525	5.07110768638177	5.18219825055453	5.08377767200199	4.97096130117231	0.0779204085681616	0.799302350415209	0.922485593889919
Merged-chr3-37754348-3	chr3	37754245	37754445	+	794.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29985.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	3.73880953313847	3.80277775415284	3.73934157452481	3.90238667193114	3.5160997857819	3.4396882008852	3.72395516551305	3.78670616429729	-0.562205286279544	0.23851030666111	0.548910355390594
Merged-chr16-92403177-3	chr16	92403076	92403276	+	716.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-3098.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	3.76739701902569	3.57508221382016	3.44948868605073	3.71914544912667	3.45296536970481	3.68075666258355	3.60405100737638	3.6165053563378	-0.169788624979116	0.726235472532773	0.891034932051019
Merged-chr16-25022738-4	chr16	25022653	25022853	+	953.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36886.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	4.80497647485584	4.59550327165635	5.22300516890644	5.36907893995211	4.72366796493934	4.59264604945856	4.95857066558474	4.68334011083259	-0.607766062779156	0.105825093565848	0.358350348949739
Merged-chr2-27043668-2	chr2	27043568	27043768	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15670.0	NM_001177627	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	3.45928685666548	3.41278910740757	3.23206434852563	3.02703882271563	2.99987128800067	3.28221389213682	3.54413363821799	3.55793810204956	0.266187804020566	0.645729172433767	0.850934142345746
Merged-chr2-165873918-4	chr2	165873783	165873983	+	760.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	4554.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	3.62955592216625	3.69949190053144	3.52144603580347	3.02864313470618	3.64383658743951	3.89953333012861	3.50746621868611	3.46171784442591	0.475256987567407	0.389775788355679	0.690041185689413
Merged-chr14-76505062-1	chr14	76504962	76505162	+	549.0	f0_balb.idr	intron (NM_009366, intron 1 of 2)	intron (NM_009366, intron 1 of 2)	552.0	NM_009366	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	3.34985831632982	3.37872419561156	3.51231639492048	3.41595054087004	3.45453677627288	3.40338469240199	3.44668160759764	3.16384682757266	-0.137255929451245	0.79068066851966	0.918840742585233
Merged-chr2-84532478-3	chr2	84532370	84532570	+	664.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-25597.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	3.42301855283366	3.49334282642089	3.72938761489552	3.536018798049	3.46614015683785	3.28122157538619	3.41079272906136	3.58357047002774	-0.357820099572693	0.480491866267285	0.755982465057009
Merged-chr12-33148659-2	chr12	33148559	33148759	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	973.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	3.35766374187364	3.30767535010626	3.5363880236665	3.82460154092267	3.51776404618666	3.95358342895821	3.46655945209832	3.58879904455124	0.328013333285961	0.543558660104273	0.794683520263773
Merged-chr5-52669677-4	chr5	52669576	52669776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172490)	promoter-TSS (NM_172490)	25.0	NM_172490	211006.0	Mm.244719	NM_172490	ENSMUSG00000029173	Sepsecs	AA986712|D5Ertd135e|SLA|SecS	Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase	protein-coding	6.12672987493439	5.9486306358434	6.51403848682619	5.7520881950486	6.2491791073405	6.30379961510467	6.32046913591079	6.14380371530034	0.241961229806843	0.360187202939947	0.66568674445473
Merged-chr9-47589989-4	chr9	47589856	47590056	+	920.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	MIRb|SINE|MIR	59604.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	5.07758292260831	5.09335064064829	4.73645731347154	5.20978367413996	4.65641713557729	4.6572166772509	4.25328341631329	4.8094241340924	-0.908504234419998	0.0121056111057118	0.0905196502965982
Merged-chr16-10543123-4	chr16	10543010	10543210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021428)	promoter-TSS (NM_021428)	-56.0	NM_021428	58239.0	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	8.31533306472742	8.23871763223261	8.16032200667796	8.51043562672433	8.0928701210969	8.05542555795657	8.46863341523072	7.90291353320448	-0.217833622624661	0.244162279537404	0.555246865661114
Merged-chr1-186749402-4	chr1	186749330	186749530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026041)	promoter-TSS (NM_026041)	-72.0	NM_026041	67223.0	Mm.289841	NM_026041	ENSMUSG00000001305	Rrp15	2810430M08Rik|5430437H21Rik	ribosomal RNA processing 15 homolog (S. cerevisiae)	protein-coding	6.92520873028406	7.00958092855183	6.7901260080797	7.28666448526006	6.80755370381392	6.78220980934081	7.02535032459121	6.38199230090222	-0.360569331343288	0.119819149898275	0.383170422796717
Merged-chr3-87909648-4	chr3	87909558	87909758	+	855.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331051, intron 1 of 6)	intron (NM_001331051, intron 1 of 6)	2808.0	NM_001331052	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	4.35966442730139	4.52591217791148	3.86316833912837	3.69877238596344	4.2939388194264	4.44785726415952	4.29842719540134	4.35752034953931	0.486125076108088	0.286932560161528	0.598607969863316
Merged-chr2-144245714-4	chr2	144245627	144245827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20475.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	6.83082204486135	6.53599291445475	6.7762467706979	7.12993913771047	6.40539222067538	6.83364754088666	6.91391196085388	6.84072603191079	-0.131933266353941	0.57978228996996	0.815474743074892
Merged-chr1-184590844-4	chr1	184590755	184590955	+	980.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33164.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	5.09463379498914	4.98065111092703	5.51207426409377	5.39873287594783	4.76076641510682	4.80688402400634	5.19483420961767	4.95312152584131	-0.639150463150622	0.0558481212502861	0.247408000053491
Merged-chr8-107437286-4	chr8	107437165	107437365	+	777.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025830, intron 1 of 23)	intron (NM_025830, intron 1 of 23)	867.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	3.45524347282343	3.48062056376631	3.51248463607192	3.39002958870888	3.46627371179045	3.57118423862718	3.60403683152552	3.80628257314383	0.518074049687467	0.286117968938784	0.597670374913625
Merged-chr10-14959612-3	chr10	14959520	14959720	+	983.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	199331.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	4.39931921425803	4.09567842031849	4.6940968684352	4.29959205239953	3.60263976618213	3.66399689155101	3.84063141034523	3.73696188801153	-1.89176407144749	6.37961052779992e-05	0.00139030831171809
Merged-chr9-63109466-4	chr9	63109363	63109563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37517.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	6.03577309656262	5.88065225374679	5.97361992731119	5.91438968723147	5.97637514774409	5.86014475040686	5.83083032321854	5.9693655838831	-0.0522380186329437	0.826723464846668	0.933519726891316
Merged-chr2-167253704-4	chr2	167253604	167253804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13167.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	7.25474729575206	6.7752345688347	7.35971801554649	7.57462398603684	7.42326832308405	7.02990838339818	7.31311843205215	7.58139444126723	0.0989280334647234	0.673823834066371	0.865885561790878
Merged-chr15-93274380-3	chr15	93274288	93274488	+	755.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346785, intron 1 of 7)	intron (NM_001346785, intron 1 of 7)	791.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	3.44213659359754	3.05190488121007	3.14259766806732	3.24135267243608	3.59242845376791	3.38426660057352	3.6241658254265	3.44066265438937	1.00949640399637	0.0558577577492978	0.247408000053491
Merged-chr14-73238620-4	chr14	73238478	73238678	+	872.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175116, exon 1 of 1)	5' UTR (NM_175116, exon 1 of 1)	687.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	4.0496437150724	3.69892211083254	4.32313713534966	4.39923232710511	4.05033852021592	4.4091768597425	4.21937867604352	4.23580083207222	0.181532986776008	0.686902069745947	0.871975133399566
Merged-chr13-48625662-4	chr13	48625558	48625758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301781)	promoter-TSS (NM_001301781)	14.0	NM_207232	218232.0	Mm.315089	NM_207232	ENSMUSG00000038042	Ptpdc1	AI843923|AW456874|Naa-1|Ptpcd1	protein tyrosine phosphatase domain containing 1	protein-coding	8.40456543365292	8.34340735569593	7.93918117677975	8.0751451886585	8.47470947499318	8.43127459346659	8.47911248769157	8.1581193589478	0.24380460516596	0.175308263524062	0.469991219938952
Merged-chr4-128796589-4	chr4	128796507	128796707	+	831.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 1 of 8)	intron (NM_001081098, intron 1 of 8)	9505.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	3.59930717385244	3.59940999205046	3.49027159508172	3.58736940947549	3.66217394660927	3.48344206698132	3.58548361371518	3.64914158505163	0.0930743417293883	0.844721809990777	0.941152266745977
Merged-chr15-78773533-4	chr15	78773436	78773636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008595)	promoter-TSS (NM_008595)	-91.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	6.18083208983543	5.75646049629382	5.41388270675374	5.44398165972639	6.09689688479261	6.06695128246882	6.33836304862734	6.28420406262137	0.755177855513223	0.00755842374302973	0.0644853222587934
Merged-chr13-117211596-4	chr13	117211503	117211703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8970.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	6.42845652910209	6.28494988271678	6.67061427276201	6.83806553336464	6.64192664527883	6.4163799849117	6.5617094065983	6.49384447284448	-0.0756605970681361	0.745473446038667	0.89953981175131
Merged-chr11-11812174-4	chr11	11812067	11812267	+	930.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3205.0	NM_001163360	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	4.57719047851831	4.26836450928018	4.31660527728794	4.40181090546606	4.57572831541145	4.49387356269697	4.80360255772713	4.79138097305134	0.614753747238339	0.089807806632121	0.327270892624917
Merged-chr10-81266778-4	chr10	81266664	81266864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025317, intron 1 of 2)	CpG	162.0	NM_025317	66047.0	Mm.43397	NM_025317	ENSMUSG00000034932	Mrpl54	0610008M19Rik|D10Sut1e	mitochondrial ribosomal protein L54	protein-coding	6.99915668938177	7.35543662275735	7.34931608909966	6.78380300227757	7.05664259364132	7.44497528480228	6.84293567053793	7.58454044472536	0.170148705256057	0.490462977442687	0.762224935512173
Merged-chr2-157201644-4	chr2	157201556	157201756	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011249, intron 1 of 21)	intron (NM_011249, intron 1 of 21)	2878.0	NM_011249	19650.0	Mm.244671	NM_011249	ENSMUSG00000027641	Rbl1	AW547426|PRB1|p107	RB transcriptional corepressor like 1	protein-coding	4.86913433690612	4.68704790856714	4.86994041056445	4.68600844301316	4.7735416335275	4.97004239191784	4.98092357772797	4.96953663808348	0.303752008361461	0.349649460114958	0.657170365755395
Merged-chr5-43218339-4	chr5	43218242	43218442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 1 of 7)	intron (NR_028417, intron 1 of 7)	-15121.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	6.12498710716123	6.1326313781488	6.64760470697441	6.53823125355916	6.03243159629285	5.91974297806237	6.32182459831492	6.05755758642316	-0.451958972815398	0.0764041246090878	0.298608407545507
Merged-chr10-59266269-4	chr10	59266174	59266374	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	44352.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	5.33754426553008	5.50822418194661	4.9624195787914	5.20771005716234	5.54419408902003	5.5694045924525	5.2205001978468	5.30480240148891	0.273940113629622	0.365259259684811	0.669970778794554
Merged-chr2-121855596-3	chr2	121855500	121855700	+	933.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11370.0	NM_199038	319996.0	Mm.292109	NM_177054	ENSMUSG00000060227	Casc4	D130060C09Rik|VGFG2573	cancer susceptibility candidate 4	protein-coding	3.58008894207982	3.76679140199327	3.83887556217516	3.93557776454955	3.63820278222849	3.5754951955413	3.82228771501069	3.52032195822023	-0.461982567337665	0.334586377030055	0.645074994735022
Merged-chr2-37772035-4	chr2	37771942	37772142	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4207.0	NM_001163566	241324.0	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	4.46425918957055	4.5858323531472	4.57837508386719	4.25306629245484	4.06075933640254	4.37781290384919	4.13549147708506	4.24743357539385	-0.639455473197354	0.108766278994901	0.364083661238622
Merged-chr10-68277016-4	chr10	68276920	68277120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	CpG	1706.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	5.9085386052571	6.24967405815556	5.74099094192546	5.40138082015076	5.71694160272826	6.08466204426325	6.02716112785006	5.90535810570622	0.135469117218278	0.647522979823143	0.851667779256884
Merged-chr5-130171708-4	chr5	130171609	130171809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199059)	promoter-TSS (NM_001199059)	-110.0	NM_001199059	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	9.18337298730824	9.2208603074638	8.93175577506356	8.843605738995	8.88375183431835	9.10972780929665	9.11985221509777	8.84108028751915	-0.0728762349778008	0.660250124156502	0.858757569392328
Merged-chr7-44857258-4	chr7	44857150	44857350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290767)	promoter-TSS (NM_001290767)	104.0	NM_001290766	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	6.47334820975728	6.29480418967769	6.19515225644617	5.96404555260946	6.29693910472416	6.18253659490242	6.20174757922828	5.90707513659482	-0.106105196951577	0.671467171153084	0.864758938564211
Merged-chr7-25395714-4	chr7	25395647	25395847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073027, exon 2 of 6)	non-coding (NR_073027, exon 2 of 6)	240.0	NM_010719	16890.0	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	7.23890523017493	7.22817261245286	6.79722804479518	6.77599136300118	7.20060315275737	7.56710970439759	7.40916260737067	7.00143185203964	0.390752843113866	0.0831621842324704	0.313348706705095
Merged-chr2-153259789-2	chr2	153259689	153259889	+	828.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_080463, exon 5 of 7)	exon (NM_080463, exon 5 of 7)	18257.0	NM_080463	140484.0	Mm.293761	NM_080463	ENSMUSG00000046020	Pofut1	O-FucT-1|mKIAA0180	protein O-fucosyltransferase 1	protein-coding	2.71141815717004	2.6202429577085	2.77242623661164	2.35366131863058	2.82880527208562	2.68681006669284	2.63910985377454	2.58012704440754	0.373242877786453	0.587298547611681	0.819118136850477
Merged-chr13-37365662-3	chr13	37365564	37365764	+	853.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	RMER15|LTR|ERVL	20319.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.81895322505707	3.75488269829551	3.81950730521948	3.86147786970739	3.77180814107711	3.66698044340238	3.7041700422139	3.60817014541384	-0.373241514469866	0.412045354760135	0.707284739828578
Merged-chr16-33906377-3	chr16	33906292	33906492	+	952.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 8 of 14)	intron (NM_001145884, intron 8 of 14)	60646.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	3.81408056081771	3.52187049459194	3.96049954041126	4.61819241382651	3.64181273690476	3.51187232772546	3.74677395227646	3.70535263047847	-1.16087426071747	0.0351071412901537	0.18561176631448
Merged-chr11-32554193-4	chr11	32554108	32554308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	URR1B|DNA|hAT-Charlie	20942.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	7.01741056679738	7.11504219573558	6.84838799559437	6.79450837659211	7.10540191329623	7.09330282114071	6.93345091621743	6.89838843817362	0.0982566060039064	0.620562130186262	0.837333027459204
Merged-chr19-46321890-1	chr19	46321790	46321990	+	560.0	f0_c57.idr	intron (NM_001347454, intron 6 of 17)	intron (NM_001347454, intron 6 of 17)	4976.0	NM_001347454	73728.0	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	2.79041849071004	2.77940413058057	2.79068531245582	2.92293800615878	3.22857830216243	3.09912901535268	3.2504652967207	3.10516325648556	1.41803764849406	0.0177078547966721	0.117863044377438
Merged-chr13-119406244-3	chr13	119406134	119406334	+	851.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308506, intron 1 of 16)	intron (NM_001308506, intron 1 of 16)	2777.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	4.11931483113993	3.50211407949743	3.94373077095161	4.101451659049	3.67121010485975	3.61455215805922	4.14073077806017	3.79126373637248	-0.345919053331654	0.489914921261518	0.761966459176932
Merged-chr14-105300755-3	chr14	105300660	105300860	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029561, intron 5 of 7)	intron (NM_029561, intron 5 of 7)	42087.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	6.79895594294882	6.96156743429887	7.19552408265993	7.4090959883795	3.82458456590742	4.29719279420073	4.33268918863721	4.21182530647591	-7.38223602932308	1.93454585465594e-22	8.82686149926637e-20
Merged-chr7-82649278-3	chr7	82649154	82649354	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177894)	promoter-TSS (NM_177894)	640.0	NM_175317	101592.0	Mm.238020	NM_175317	ENSMUSG00000038563	Efl1	4932434J20Rik|6030468D11Rik|AI451340|AU019507|AU022896|D7Ertd791e|Eftud1	elongation factor like GPTase 1	protein-coding	4.01315431305727	4.02035048503703	3.4916044635938	3.52837075034465	3.69773147829167	4.13829706458323	3.6566393826518	3.55231836602367	-0.013736107063938	0.978810950695508	0.992516114931184
Merged-chr10-111837001-4	chr10	111836918	111837118	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37358.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	4.30485104673526	3.85729414403055	4.34994734883244	4.5717556721228	4.29492196764954	4.60541811181265	4.6357744369827	4.2092671761631	0.31900904787254	0.460081695290203	0.742386538562328
Merged-chr6-65672857-2	chr6	65672757	65672957	+	730.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172399, intron 1 of 3)	CpG	1246.0	NM_172399	68169.0	Mm.52392	NM_172399	ENSMUSG00000049001	Ndnf	A930038C07Rik|epidermacan	neuron-derived neurotrophic factor	protein-coding	2.80705430149827	2.82792489826249	2.74052331889033	2.56239994429507	2.88652792374458	2.98031708566885	2.92042713343724	3.04335568463122	1.05269435842965	0.0856923512482392	0.318811199534728
Merged-chr19-4000274-4	chr19	4000193	4000393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025529)	promoter-TSS (NM_025529)	-287.0	NM_025529	66387.0	Mm.259222	NM_025529	ENSMUSG00000110949	Nudt8	2310039H17Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 8	protein-coding	7.38985712113005	7.62560446891298	7.08918660197664	7.10175587766989	7.0350446281286	7.36017101696635	6.93911715578376	7.25485682696614	-0.222028738362205	0.307614493681431	0.619940882973771
Merged-chr9-35117542-4	chr9	35117421	35117621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009178)	promoter-TSS (NM_009178)	-657.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	7.31025333331881	7.82949569673859	8.12228794533968	7.89257230315045	7.56717982338571	7.56541195541654	7.9546626304707	7.45387125165324	-0.227431590966617	0.305128849621834	0.617617998085348
Merged-chr10-13968101-4	chr10	13967954	13968154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	1675.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	5.36459230327897	5.39476781908994	5.89973185068789	5.55873238839259	5.34776158425186	5.23996782978624	5.30849815350804	5.531306955002	-0.362871359647258	0.216390556478053	0.522932824728436
Merged-chr15-79511706-4	chr15	79511589	79511789	+	851.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4719.0	NM_134090	105785.0	Mm.298199	NM_134090	ENSMUSG00000010830	Kdelr3	AI173274	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3	protein-coding	4.12862444515047	4.215674676826	4.21658728561972	3.8936311232942	4.06698287616094	4.15920799592235	4.01835885322553	3.87858878057009	-0.192907189857516	0.649996375829505	0.853021044216188
Merged-chr7-98703548-3	chr7	98703447	98703647	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_144495)	promoter-TSS (NR_144495)	300.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	4.67018032360819	4.82568142277814	4.97475976890839	4.53897184355796	4.41187524886376	4.2921381842662	4.53005991171271	4.74192698832356	-0.545506219654183	0.144979261855119	0.424163709136648
Merged-chr15-34342825-1	chr15	34342725	34342925	+	827.0	f0_balb.idr	intron (NM_001358780, intron 2 of 18)	intron (NM_001358780, intron 2 of 18)	15047.0	NM_001256161	77358.0	Mm.402759	NM_001256161	ENSMUSG00000094447	9430069I07Rik	-	RIKEN cDNA 9430069I07 gene	protein-coding	3.23003032786368	3.45328095629133	3.43817193704968	3.63722873377279	2.89392340755402	2.78758758712838	3.03899223344889	2.76128297151546	-2.5716608600748	0.000184360270344714	0.00339875153661393
Merged-chr15-72818819-2	chr15	72818719	72818919	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164641, intron 17 of 17)	intron (NM_001164641, intron 17 of 17)	-8495.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	3.44282209210015	3.32510882039114	3.38397367533464	3.69132797988658	3.42451815164042	3.6709825796813	3.37195369143637	3.83647010232756	0.337828009683881	0.522385818621708	0.781971587334536
Merged-chr5-125177919-4	chr5	125177777	125177977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253905, intron 1 of 42)	CpG	1337.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	4.76661319491495	4.75165600390525	4.91048214165913	4.92492420990646	4.60896893189353	4.78226248720313	4.62718145023803	5.00459377659401	-0.180920008246401	0.593947371951146	0.823228952366238
Merged-chr7-74944882-4	chr7	74944783	74944983	+	873.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEd|LINE|L1	-85328.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	3.79851812644379	3.55988763753241	4.09391143660507	3.82281102458184	4.26692075224401	3.97465779064401	4.031276519907	4.04672489936949	0.714845531885781	0.108743572921296	0.364041895257499
Merged-chr1-92180878-2	chr1	92180777	92180977	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_207225)	promoter-TSS (NM_207225)	-536.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	7.37500310215109	7.23558257865167	7.17867988641567	7.37055981389555	7.5105939591788	7.72391585526472	7.59505223183463	7.73797563875732	0.456269941289564	0.00981356834375767	0.0778295243610392
Merged-chr19-45176486-3	chr19	45176390	45176590	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25775.0	NM_021901	21908.0	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	4.24836531934695	4.2161090884926	4.30600922775764	2.89991157914986	5.59214798902949	5.60321336046754	5.51325445084874	5.56127836827662	3.07375975709058	4.96979452295217e-05	0.00112559168449039
Merged-chr6-142391166-4	chr6	142391075	142391275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025872, intron 1 of 4)	intron (NM_025872, intron 1 of 4)	3932.0	NM_025872	66964.0	Mm.3676	NM_025872	ENSMUSG00000030245	Golt1b	2310061A22Rik|AA407874|AU024291|CGI-141	golgi transport 1B	protein-coding	5.39602250603926	5.51061187532307	5.27043307316203	5.56873612237004	5.6221630275174	5.54239169905439	5.75389588526735	5.53544643986536	0.277934215766396	0.307177426691181	0.619358168218558
Merged-chr8-109750866-4	chr8	109750774	109750974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13135.0	NM_001080930	52335.0	Mm.276770	NM_001080930	ENSMUSG00000069895	Atxn1l	AW558552|Boat|C330011L24Rik|D6Mgi37|D8Ertd587e	ataxin 1-like	protein-coding	7.87193722866495	8.11766399342753	7.56898250536138	7.7785991915927	7.93692104962285	7.90373724075653	7.63850771701168	7.93885598270007	0.0152263571481881	0.935707324300616	0.976639892179174
Merged-chr5-99252948-4	chr5	99252841	99253041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145839)	promoter-TSS (NM_145839)	-14.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	8.54438134815735	8.6477705190552	8.74743515439234	8.27346190259091	8.8816372686198	8.88764107247189	8.80695193816352	8.71258912452702	0.334267786270193	0.044387749470644	0.214842623389839
Merged-chr19-41335023-2	chr19	41334923	41335123	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	B2_Mm1t|SINE|B2	50047.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	3.06446558489049	2.96921246380835	3.18898488111682	2.82693820977181	3.63984605273263	3.24101921506829	3.23400842780268	3.24512451699515	1.36304557579372	0.0171960808002196	0.115537080921166
Merged-chr5-67814661-4	chr5	67814543	67814743	+	906.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009727, exon 2 of 36)	exon (NM_009727, exon 2 of 36)	32788.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	4.51153915718764	4.80545806366728	5.18023431901558	4.96378513455145	4.94957942176516	4.44475963121906	4.49227785083191	4.96964216751909	-0.294094773456793	0.441809483051538	0.728661133373312
Merged-chr15-81301359-4	chr15	81301256	81301456	+	791.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49494.0	NR_077230	78102.0	Mm.296832	NR_077229	ENSMUSG00000115970	8430426J06Rik	-	RIKEN cDNA 8430426J06 gene	ncRNA	3.87835651846266	3.67659890970246	3.33925211654703	3.42165612893994	3.99006654889804	3.5196161040324	3.72338980454431	3.52390250438839	0.37706317178072	0.468594641620839	0.747803507343786
Merged-chr9-35633190-2	chr9	35633090	35633290	+	762.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15012.0	NM_001167592	100312956.0	Mm.475850	NM_001167592	ENSMUSG00000094995	Pate3	Gm17365|Pate-dj	prostate and testis expressed 3	protein-coding	2.91035175960482	2.76687922213374	2.97720655101469	2.88703187910237	3.55408711417755	3.15168924659061	3.08926909613289	3.15707741695907	1.49697782978884	0.0112948189641603	0.0860487979289274
Merged-chr4-32010993-1	chr4	32010893	32011093	+	831.0	f0_balb.idr	intron (NM_009316, intron 14 of 16)	intron (NM_009316, intron 14 of 16)	46886.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	3.69787087172715	3.65221423381522	3.89276697217926	3.91093252393303	3.70076842715845	3.64581579825358	3.6836557387709	3.58698516798048	-0.436056003764157	0.350125269174697	0.657682371679415
Merged-chr10-31600300-3	chr10	31600195	31600395	+	996.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146349, intron 1 of 5)	intron (NM_001146349, intron 1 of 5)	9430.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	4.99597482647273	4.4339907541349	5.32529677778366	5.53157294556728	4.68434819365075	4.08284273618432	4.23853531969384	4.35958334544311	-1.62153285460104	0.000343396378394102	0.00566325551846937
Merged-chr15-76380409-4	chr15	76380309	76380509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175457)	promoter-TSS (NM_175457)	-104.0	NM_175457	223658.0	Mm.123240	NM_175457	ENSMUSG00000022558	Mroh1	D330001F17Rik|Heatr7a	maestro heat-like repeat family member 1	protein-coding	8.80708413938039	8.98518372950948	8.79236745138692	8.71782026910435	8.7011314472179	8.82883409511753	8.86463611961003	8.60442013718004	-0.0936929635724093	0.540507145215488	0.792795047998954
Merged-chr9-119365435-4	chr9	119365328	119365528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359699, intron 3 of 17)	B3A|SINE|B2	8047.0	NM_001359699	102448.0	Mm.219497	NM_001033209	ENSMUSG00000035769	Xylb	AI132223|AI327421	xylulokinase homolog (H. influenzae)	protein-coding	5.18858809640639	5.30307964308806	5.25467601968494	5.50209919632062	5.49135640626607	5.26266883461354	5.67521459716395	5.11731241384723	0.138060525616238	0.649252429103399	0.852656869739189
Merged-chr8-47991143-4	chr8	47991061	47991261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133791)	promoter-TSS (NM_133791)	-610.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	7.24975269331291	7.24186168428288	7.39918111969975	7.55294974472812	6.83095625160637	6.69712246736394	6.99841174558412	6.9518350250062	-0.687871325969175	0.000474740294081393	0.00740880056838839
Merged-chr5-140795420-3	chr5	140795313	140795513	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	35018.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	4.80077278100679	4.78116759393576	4.37066339306888	4.76807173063471	3.95601609900166	3.97918209040112	3.95830505672809	3.91301166303908	-1.87522060150527	7.74533849484142e-06	0.000219294132348575
Merged-chr7-25619385-4	chr7	25619271	25619471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025504)	promoter-TSS (NM_025504)	-43.0	NM_001290487	66349.0	Mm.159956	NM_025504	ENSMUSG00000057229	Dmac2	2310004L02Rik|Atp5sl|C030044E10Rik	distal membrane arm assembly complex 2	protein-coding	6.67963031248817	6.93495860781231	6.41193703665695	6.82895720200103	6.60734353357224	6.90153296754793	6.50328348078483	6.83224966900599	-0.0308214458589563	0.891333334057315	0.959342769643984
Merged-chr17-12755289-4	chr17	12755192	12755392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	13981.0	NR_027784	104103.0	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	8.38400675337664	8.43862992622752	8.32051905060643	8.52714861408881	8.26927742414205	8.37588065504884	8.2593163807668	8.31508195864737	-0.15374755503563	0.306631935195715	0.619051127874117
Merged-chr8-117201713-3	chr8	117201623	117201823	+	943.285706	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081151, intron 9 of 10)	ID_B1|SINE|B4	43588.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	4.17140650805891	3.87941516070214	3.75275734169442	3.99803087366278	3.58884892937944	3.75613653394189	3.89178981254614	4.0000887888187	-0.423528033092309	0.358838227000462	0.664778844045271
Merged-chr5-72219819-4	chr5	72219713	72219913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	16470.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	8.23616809393372	8.43429070652505	8.64463804045568	8.36272937174745	8.18622545731718	8.44461295708629	8.54360075290974	8.15237452551701	-0.109818350927209	0.535287943264711	0.789648104016425
Merged-chr1-55023891-4	chr1	55023779	55023979	+	772.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031179, intron 1 of 24)	(GGAA)n|Simple_repeat|Simple_repeat	3599.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	4.04601291190678	3.91738575390067	3.90776593046906	3.91985617122151	4.20399600085299	3.97910573588012	3.36297717888445	3.6937371693997	-0.248844048317169	0.626494622638176	0.840573424530409
Merged-chr19-32181425-4	chr19	32181309	32181509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	29604.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	7.4712339497897	7.86985899677758	7.77147737199523	7.31039159948638	6.78963705697106	6.94194479015738	6.64758278693347	6.35774043803786	-1.25456955854085	5.12444402163641e-08	2.33965876212994e-06
Merged-chr9-35278080-4	chr9	35277978	35278178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-3027.0	NR_040715	71133.0	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	5.4545584675521	5.62659205299465	5.94745793757456	5.91973345743172	5.53664102758299	5.47503781516992	5.54244518597162	5.76895366402671	-0.300033940471159	0.281076403681309	0.593153291080506
Merged-chr3-60481916-4	chr3	60481831	60482031	+	908.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253713, intron 2 of 9)	intron (NM_001253713, intron 2 of 9)	9101.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.70367966253179	4.39693984597278	4.24824750384743	4.74976322494344	4.5374111527696	4.42512404618465	4.49628701126671	4.38689907207528	-0.201089328712799	0.598860686220329	0.826116548064469
Merged-chr5-123150332-4	chr5	123150181	123150381	+	940.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040398, intron 6 of 16)	intron (NM_001040398, intron 6 of 16)	8088.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	4.40377973207512	4.05735520087835	3.92420316563579	3.70572704336366	4.38016117458898	4.40740088963474	4.38363405691772	4.62163938277528	1.03734818337984	0.0147623990761682	0.103636729839488
Merged-chr19-11770386-4	chr19	11770272	11770472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025606)	promoter-TSS (NM_025606)	-43.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	5.29925484280893	5.3990076469888	4.73663917396802	5.14975877810344	5.304932817374	5.66963877263794	5.36138734838844	5.59349236981516	0.559768013280627	0.0752024813903734	0.29599853035199
Merged-chr16-30550545-4	chr16	30550444	30550644	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172614)	promoter-TSS (NM_172614)	34.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	5.16766132223665	5.29803251528335	5.5593892165685	5.3272410880858	5.08716303594004	5.17097370048647	4.9320487799043	5.34738518985778	-0.375430558219158	0.216411122633639	0.522964769918173
Merged-chr7-142384455-4	chr7	142384384	142384584	+	917.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009983, intron 2 of 8)	intron (NM_009983, intron 2 of 8)	3386.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	3.63846103752367	3.72486901208483	4.23428888576463	4.25736673283099	3.90854309713415	3.93606538013903	3.85335768142573	4.23150569729142	-0.0418463197139715	0.931015695358935	0.97520485035137
Merged-chr16-78577354-4	chr16	78577258	78577458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252440)	promoter-TSS (NM_001252440)	-670.0	NM_025967	67102.0	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	7.97194151295169	8.30231466127491	7.97325949323825	8.3691360259635	8.4230710136394	8.52193046298249	8.35220039913481	8.04466469042467	0.219534616901048	0.24239812226249	0.553125891851433
Merged-chr13-112785185-4	chr13	112785084	112785284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15593.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	5.64730603390534	5.45458212541123	5.48306003367865	5.47180134748729	5.84640193572256	5.94452497525503	5.61974049138459	5.7671034203797	0.484415131189682	0.0616816836635351	0.262743301106329
Merged-chr15-58732197-4	chr15	58732103	58732303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	91224.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	5.53867752066727	5.45019971016417	5.83285957358608	5.95400413583863	5.57399306182044	5.53996725365161	5.48422941752044	5.32717927372792	-0.402249000563932	0.159486574175658	0.447041258562947
Merged-chr2-151994997-3	chr2	151994900	151995100	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1511.0	NM_027172	69698.0	Mm.258262	NM_027172	ENSMUSG00000027463	Slc52a3	2310046K01Rik|RFT2	solute carrier protein family 52, member 3	protein-coding	3.88729112677025	3.68923708204946	3.6391898512819	3.71147658296502	3.55241565522139	3.86326219307353	3.62515532378577	3.74257697254967	-0.117984623878357	0.800497618836197	0.923040237917604
Merged-chr12-98272707-3	chr12	98272619	98272819	+	807.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008152, intron 1 of 1)	L1ME3A|LINE|L1	4084.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	3.34320032351476	3.71310704099107	3.91361468723239	3.68127098462839	3.6152518041797	3.58077181571606	3.62014581129454	3.57902143052601	-0.249627556761039	0.613929746571624	0.833604331777153
Merged-chr19-17247546-4	chr19	17247448	17247648	+	798.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91957.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	4.82020398582062	4.57231626146802	4.40357224052599	4.468208291606	4.4482636949628	4.22927879102523	4.38399576333071	4.81770459745558	-0.180501493776408	0.641548797951101	0.848794290196682
Merged-chr19-45006550-4	chr19	45006465	45006665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153796)	promoter-TSS (NM_153796)	7.0	NM_153796	226153.0	Mm.105585	NM_153796	ENSMUSG00000025209	Twnk	D19Ertd626e|PEO|Peo1|Twinl	twinkle mtDNA helicase	protein-coding	8.22643935552453	8.49220206798908	8.46322733544504	8.15160573744552	8.11121246965426	8.46281693034931	8.21811012594884	8.09240053831186	-0.141992740923872	0.42059447610391	0.713388099239967
Merged-chr11-78194901-4	chr11	78194798	78194998	+	895.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045516, intron 1 of 3)	intron (NM_001045516, intron 1 of 3)	1506.0	NM_001045516	216974.0	Mm.50974	NM_001045516	ENSMUSG00000044122	Proca1	4933404M19Rik	protein interacting with cyclin A1	protein-coding	4.30919104716529	3.9699135645127	4.04504588552578	4.06047333546889	3.89270588640839	4.43812425786683	3.75991194710648	4.22488294105707	0.00186818199382577	0.996684627107122	0.998662899755875
Merged-chr7-92875180-4	chr7	92875077	92875277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028243)	promoter-TSS (NM_028243)	-76.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	8.50904895426818	8.54836183587469	8.62043009057417	8.6785473949356	8.73082550591452	8.83891383429983	8.98027994160949	8.56352231186595	0.241585566304079	0.128321493512544	0.398585626397538
Merged-chr4-136142921-4	chr4	136142845	136143045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008321)	promoter-TSS (NM_008321)	-877.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	4.87677845431262	4.84995027933673	4.94877883432624	4.98120889880587	5.1218302795281	4.72574187163139	4.85444461421099	5.10747993002937	0.104906818772198	0.746217706891103	0.899980178230401
Merged-chr4-62479947-4	chr4	62479845	62480045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138653)	promoter-TSS (NM_138653)	-122.0	NM_138653	192120.0	Mm.29808	NM_138653	ENSMUSG00000028392	Bspry	-	B-box and SPRY domain containing	protein-coding	5.40992571442495	5.35909228815894	5.62324751431517	5.03003473711901	5.5349733313531	5.43389055297488	5.49367764628401	5.51763923523841	0.259513580869606	0.380605541215487	0.682959506520613
Merged-chr7-129331976-4	chr7	129331869	129332069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080963, intron 5 of 6)	intron (NM_001080963, intron 5 of 6)	74875.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	5.2336828760021	5.10863548769665	5.46773253973508	5.87256246257205	5.14911501076248	5.04941147553264	4.964921296284	5.61397553130025	-0.452453815820034	0.198094798383674	0.499581549537682
Merged-chr19-9911464-6	chr19	9911361	9911561	+	860.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11928.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	4.11688843500383	4.18079464087547	3.91667208722461	4.23232810439331	4.40561366656588	4.03824166174301	4.144919635114	3.96763108553487	0.0919691742587425	0.828541171662517	0.934199261424475
Merged-chr12-111670943-4	chr12	111670879	111671079	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021273, exon 5 of 8)	exon (NM_021273, exon 5 of 8)	1359.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	5.10250823248622	4.81152010798957	4.8307830254077	4.52153522328336	4.92862584775083	5.18004385025292	4.95016166533701	5.00446933694642	0.405733875025685	0.232356934005414	0.541946192758711
Merged-chr7-28168856-4	chr7	28168742	28168942	+	976.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007991)	promoter-TSS (NM_007991)	-906.0	NM_007991	14113.0	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	4.46251997712831	4.50085971947842	4.3702341893362	4.41379884145481	4.75138176405767	4.72445869228285	4.72162551233688	5.02924494406099	0.810060402425381	0.0192362680663716	0.124621673313576
Merged-chr9-123923690-4	chr9	123923609	123923809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	44983.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	4.8065068920807	5.15861794269339	4.91897632319236	4.8287885069269	4.85381567221525	4.90375871226826	4.96418183798404	5.11311757141901	0.0530715946235134	0.869753013040416	0.951086918748906
Merged-chr18-39265274-4	chr18	39265167	39265367	+	861.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 17 of 21)	intron (NM_001361073, intron 17 of 21)	221978.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.01149939262521	4.17348789958246	4.47307095022552	4.23036069997902	3.90906266879488	3.91390767684005	4.18092604700768	4.0097462809466	-0.591727271791209	0.163303663048324	0.452922047697813
Merged-chr11-98588292-4	chr11	98588197	98588397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1052.0	NM_025661	66612.0	Mm.180546	NM_025661	ENSMUSG00000038150	Ormdl3	2810011N17Rik|AI315223	ORM1-like 3 (S. cerevisiae)	protein-coding	6.14676899752247	6.07941379874051	5.80991266869197	5.58823966349389	5.83881014411319	5.98538888144651	5.68023209333275	5.78134033531172	-0.136904354094933	0.616143541991196	0.834845587136962
Merged-chr18-52565565-2	chr18	52565465	52565665	+	699.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-35698.0	NM_001286182	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	3.0049030968019	3.05750187555088	3.12414206816271	2.60379329987911	3.4166593873575	3.05189979602224	2.93161259510918	2.94016561041368	0.602027284273352	0.353072834613038	0.659962481484281
Merged-chr1-38012315-4	chr1	38012200	38012400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 1 of 23)	intron (NM_198303, intron 1 of 23)	14290.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	6.92330367706217	6.95257441550224	6.81346875561476	6.87466845027268	7.3041250237517	6.82112215925943	7.31196898006639	7.02157692228992	0.342122551074223	0.0943981830698204	0.33612994079664
Merged-chr13-110561194-4	chr13	110561139	110561339	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	166195.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	4.11680648417499	4.24881924218878	4.4355362063535	4.58413752550582	4.25198662860866	4.29227523275164	4.45453581610179	4.47230336636488	-0.0175536517536744	0.964720904752259	0.987501176055352
Merged-chr9-32466613-3	chr9	32466551	32466751	+	943.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 2 of 8)	intron (NM_008026, intron 2 of 8)	72666.0	NM_001168354	56379.0	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	3.17636616000572	3.10992441585456	3.28342102976958	3.25091657342947	2.96227445011402	2.8974996090071	2.78453206685932	3.22938765804533	-0.945738870514787	0.119431979787402	0.382419223727845
Merged-chr16-3909040-4	chr16	3908964	3909164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029738)	promoter-TSS (NM_029738)	55.0	NM_029738	76779.0	Mm.458921	NM_029738	ENSMUSG00000014232	Cluap1	2310030D15Rik|2610111M03Rik	clusterin associated protein 1	protein-coding	6.65209691437732	6.70779613919976	6.55995920013303	6.50699356281185	6.39096423230081	6.52701357706092	6.85023496643182	6.43694979319558	-0.0650028808401076	0.768556882147054	0.909395764436187
Merged-chr18-4325791-4	chr18	4325689	4325889	+	948.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27164.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	4.23725050773087	5.08919589700867	5.0345207514811	4.11302615677642	4.96945810866321	4.42372213141488	5.03802848778951	4.43781945878499	0.119488468856771	0.796786966770136	0.921363000694201
Merged-chr7-19501135-4	chr7	19501036	19501236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	7195.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	7.64282374435727	7.7262142141998	7.38824060181866	7.46956251965808	7.63599656665076	7.53482895918635	7.23521500742685	7.46168471817871	-0.108315255562153	0.566675143241007	0.807951645949796
Merged-chr4-31963955-4	chr4	31963867	31964067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172688)	promoter-TSS (NM_172688)	-140.0	NM_009316	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	8.06428418866724	8.34506191273206	8.22434620608655	7.56066289253111	8.07219255880071	8.21696823193557	8.19689261598796	7.95150498786452	0.049896148144311	0.811889751387079	0.927317521365569
Merged-chr12-75818794-3	chr12	75818700	75818900	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005510, intron 1 of 115)	CpG	482.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	4.69368745435202	4.73452369053604	4.81301115322668	5.10700391748703	4.84313042799431	4.98657314871397	5.02825574741645	4.84700744809105	0.111954170989516	0.740666358598684	0.897998236257649
Merged-chr9-40832220-3	chr9	40832105	40832305	+	847.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	30932.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	2.94953881661237	2.86906584893706	2.94983377741125	2.59317296033686	4.03210704087003	3.81946227167443	4.28226193824347	4.23606167622879	5.26828335500812	1.11374751020527e-12	1.17794107026598e-10
Merged-chr12-79617511-3	chr12	79617429	79617629	+	805.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	307204.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	3.35572927513268	3.07462368446468	3.35623173686851	2.66917387063063	3.27979554714735	3.4186798113224	3.1148553565822	3.12467405551997	0.374116427113254	0.553561618898464	0.800267334299573
Merged-chr8-10835279-4	chr8	10835223	10835423	+	952.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47131.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	4.29700170163208	4.50191035567105	3.99408091612788	4.57420924629393	4.1931887530432	4.33132683596997	4.78598698653981	4.04745513891259	-0.00486882473917702	0.991207795711753	0.996682766725531
Merged-chr9-66383546-4	chr9	66383442	66383642	+	987.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145617, intron 3 of 77)	T-rich|Low_complexity|Low_complexity	33092.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	5.54718022240049	5.09845701561089	4.93205908981343	5.19576543452343	5.30161401748855	5.24938185099101	4.61649266457013	4.96595554175168	-0.268764103246517	0.44511841082061	0.731221199746133
Merged-chr5-103758703-4	chr5	103758615	103758815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	AT_rich|Low_complexity|Low_complexity	4142.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	6.20410127925868	6.0789895129848	6.12684141012403	5.90035066183587	6.09598388682849	6.36077461273839	5.9463308703073	6.18163605675683	0.126254478086422	0.600919626167096	0.827051492743764
Merged-chr5-33630250-1	chr5	33630150	33630350	+	630.0	f0_balb.idr	promoter-TSS (NM_178390)	promoter-TSS (NM_178390)	-615.0	NM_001359463	74504.0	Mm.294695	NM_178390	ENSMUSG00000037339	Fam53a	2410018C17Rik|5430419M09Rik|Dntnp	family with sequence similarity 53, member A	protein-coding	3.65274280103791	3.3281141530418	3.40200353368743	3.39594320086332	3.60418153407502	3.45887388293975	3.01002050726354	3.22207607206385	-0.333846631060049	0.558685075945679	0.803334108131741
Merged-chr17-43327955-4	chr17	43327874	43328074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-32457.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	6.16234672735462	5.90870905070445	6.60207062600997	6.0509458825652	6.344410152088	5.94339201633203	6.3353916955462	6.34622462614389	0.0924424612174001	0.725250132914107	0.890789164909926
Merged-chr3-101616015-3	chr3	101615903	101616103	+	684.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11296.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	3.66946920004929	3.0568788601963	3.40345583068897	3.1634633676837	3.56172847638821	3.45895569786789	3.78875652154833	3.61874095351014	0.925358172436684	0.0874561893435456	0.322502726855605
Merged-chr8-110950491-1	chr8	110950391	110950591	+	588.0	f0_balb.idr	intron (NM_009179, intron 1 of 6)	intron (NM_009179, intron 1 of 6)	30626.0	NM_009179	20444.0	Mm.200388	NM_009179	ENSMUSG00000031749	St3gal2	AI429591|AW822065|ST3GalII|Siat5	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding	2.72706008643464	2.68807411692906	3.05343854828925	2.84951779985555	2.36607728902525	2.47733455549876	2.58907327315939	2.59597250891019	-1.82208941846535	0.0135565652320634	0.0978048608000244
Merged-chr19-10895177-4	chr19	10895081	10895281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253843)	promoter-TSS (NM_001253843)	-50.0	NM_134129	28000.0	Mm.491104	NM_134129	ENSMUSG00000024735	Prpf19	AA617263|AL024362|D19Wsu55e|NMP200|PSO4|Prp19|Snev	pre-mRNA processing factor 19	protein-coding	8.0413095873302	8.38872924408397	7.71481815231863	7.84964434219512	7.98720938578319	8.25257908560244	7.87338877684314	7.94906512769785	-0.00212169462732925	0.991659734098605	0.996773303789061
Merged-chr19-45032044-3	chr19	45031949	45032149	+	881.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195265, intron 10 of 15)	intron (NM_001195265, intron 10 of 15)	13723.0	NM_001195265	100503041.0	Mm.329877	NM_177605	ENSMUSG00000074818	Pdzd7	9130207N01|EG435601|Pdzk7	PDZ domain containing 7	protein-coding	3.64349455816465	3.50554565424856	3.69384645134152	3.50603220272596	3.72987457385134	3.34061884862016	3.41063311015575	3.73949943522175	-0.0279027302643239	0.955777528016574	0.984292813605202
Merged-chr7-92832616-4	chr7	92832520	92832720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029494, intron 4 of 4)	Lx6|LINE|L1	41627.0	NM_001355126	74041.0	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	6.37037895712811	6.21796227284635	6.60063717010744	6.60562936748817	5.92636205683687	5.73363501697163	5.88045820886546	5.66851129318692	-1.00717556306167	4.54019321690027e-05	0.00104045850929087
Merged-chr16-56075427-4	chr16	56075322	56075522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025483)	promoter-TSS (NM_025483)	18.0	NM_001003973	66315.0	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	6.45913728011726	6.07257493273753	6.03369547658946	6.18890641340944	6.39755945721212	6.36243654818837	6.50644165061792	6.62447604092786	0.415661482190582	0.0694529867291143	0.281862942151299
Merged-chr16-32607766-3	chr16	32607667	32607867	+	902.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-1129.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	3.78462576163641	3.76908482221653	3.83503887045282	3.714679687312	3.61794594111587	3.68103790941876	3.71827529359734	4.05587845636346	0.0105560603688279	0.981778955587073	0.993492379943959
Merged-chr19-47374609-3	chr19	47374529	47374729	+	908.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 3 of 14)	MLT1K|LTR|ERVL-MaLR	89782.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	3.101747188233	3.44660530556084	3.45164042965879	3.37361890493952	3.18687875680787	3.4586714266251	3.21793053101918	3.22771616294765	-0.290698342869604	0.592237745628149	0.822019239498327
Merged-chr7-19326564-4	chr7	19326456	19326656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16511.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	8.11694879088959	8.49089057061214	7.86131817641916	7.97058825419903	8.61315708374427	8.48724092128797	8.65673001852667	8.08022293766043	0.441612346252847	0.0334028314840606	0.1797237202557
Merged-chr12-110446496-4	chr12	110446341	110446541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135001)	promoter-TSS (NM_001135001)	-738.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	7.99649965190903	7.7675416264125	7.68253977307277	7.84279669038067	7.55584230750251	7.68113188264834	7.86550258340311	7.46918857476583	-0.233586597537113	0.195557887141447	0.496384524956887
Merged-chr9-14523833-4	chr9	14523741	14523941	+	909.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23222.0	NM_023153	66070.0	Mm.245938	NM_023153	ENSMUSG00000004096	Cwc15	0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1	CWC15 spliceosome-associated protein	protein-coding	3.87931277558226	4.29997111524031	3.9355635941817	4.05127659556959	4.38957986529625	4.05835950030929	4.29229533295204	4.34945864783834	0.572525414898531	0.167202274640637	0.458712303204699
Merged-chr1-155147442-4	chr1	155147358	155147558	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355062)	promoter-TSS (NM_001355062)	-644.0	NM_008209	15064.0	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	5.84420547278531	5.3143372792063	5.88885184265615	6.04050523391593	5.83107639608963	5.37391768765425	5.37031809968166	5.6753669331558	-0.364736649819327	0.234393276765901	0.544268585576646
Merged-chr7-104244430-4	chr7	104244330	104244530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357679)	promoter-TSS (NM_001357679)	-27.0	NM_001357679	94094.0	Mm.326945	NM_030684	ENSMUSG00000056144	Trim34a	Trim34|Trim34-1	tripartite motif-containing 34A	protein-coding	7.14755026701923	7.0806686615981	7.13741007030271	6.9898159416815	7.24441182898978	7.11682552936584	7.15725752526255	6.9347853919664	0.0555881949106594	0.768114327265209	0.909266558474345
Merged-chr15-27688321-4	chr15	27688264	27688464	+	957.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6822.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	4.18727146438343	3.80108658262289	4.38923194650278	4.2613401326542	3.97978646376863	4.01704691883381	3.9325191725308	4.18529166182102	-0.387182046688953	0.374067441240004	0.677430958681616
Merged-chr11-62007624-4	chr11	62007625	62007825	+	933.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	50962.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	3.68655451124567	3.25809377938169	3.25237324937802	3.20268767996849	3.45178569564173	3.70985115405593	3.47370021813563	3.37362494553594	0.510430640967067	0.335951767815416	0.646132315959185
Merged-chr3-20076834-4	chr3	20076754	20076954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355097, intron 10 of 25)	B2_Mm2|SINE|B2	18563.0	NR_105047	20585.0	Mm.209650	NM_009210	ENSMUSG00000002428	Hltf	AF010600|BC057116|P113|Smarca3|Snf2l3	helicase-like transcription factor	protein-coding	6.05524925693706	6.23270352996912	6.0348891710654	5.8860644843984	6.19700606983165	5.89648800877832	6.40499559114492	6.00880136364407	0.149895436029177	0.549097597057869	0.797838553710581
Merged-chr1-80637330-4	chr1	80637220	80637420	+	926.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	28032.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	4.74723341242502	4.33117575802468	4.87755001620797	4.60460991637671	4.25454605566447	4.16274063745373	4.50346827875526	4.56155785523998	-0.615369968738407	0.116081868897588	0.376977431620652
Merged-chr11-85506490-4	chr11	85506398	85506598	+	877.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 15 of 25)	B1_Mur4|SINE|Alu	153334.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	4.24941764887657	4.07248548301156	4.37025013546951	4.37424444999458	4.12127587269184	3.797247553633	3.90018688734525	4.11471950680236	-0.721542214640637	0.0909174900157562	0.329468283363787
Merged-chr1-138962600-7	chr1	138962510	138962710	+	998.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1099.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	4.4011181260724	4.57042908732103	4.71807054130112	4.56120407450814	4.72907496266627	4.74093362634479	4.1392174291681	4.2573026440404	-0.143671678316973	0.717343773772404	0.886969736012834
Merged-chr10-120149531-2	chr10	120149431	120149631	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 8 of 11)	intron (NM_001359184, intron 8 of 11)	-36566.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	3.38841722627914	3.01203662695456	3.38895366569916	3.01681034149776	2.76055203291438	2.96951201065078	3.10978742318247	3.05935541168467	-0.952839898400023	0.125159607584131	0.392687507570294
Merged-chr17-73939161-3	chr17	73939053	73939253	+	961.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 4 of 35)	MTE2b|LTR|ERVL-MaLR	11043.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	3.80557481519417	4.21054053765249	4.01038004846999	4.17003423236272	3.69976769467542	4.31270905605005	3.61647613863484	3.85804686552553	-0.463631224793595	0.334704809345317	0.645165319599757
Merged-chr16-90220613-4	chr16	90220505	90220705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011434)	promoter-TSS (NM_011434)	-137.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	8.25000601227764	8.25304888064286	8.2513472377463	8.19609443270551	8.31942244035295	8.18223956109363	8.29559425210767	8.06067202168877	-0.0177330388208187	0.908729559560255	0.966100563913989
Merged-chr4-45285541-1	chr4	45285441	45285641	+	719.666687	f0_balb.idr	exon (NM_001081172, exon 16 of 16)	exon (NM_001081172, exon 16 of 16)	-11627.0	NM_027266	69934.0	Mm.46761	NM_027266	ENSMUSG00000035601	Trmt10b	2610042J10Rik|Rg9mtd3|Rnmtd3	tRNA methyltransferase 10B	protein-coding	3.06435048837012	2.89192279910921	2.84887752232094	3.07047343973445	2.51369745183662	2.54064516198773	2.43279999952906	2.58806330994046	-2.5902143927646	0.000836376650329125	0.0116547481585311
Merged-chr10-14082580-4	chr10	14082447	14082647	+	689.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010437, intron 2 of 8)	LTR88b|LTR|Gypsy?	116168.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	3.27525288472283	3.50779820135946	3.45127338120654	3.39952751521404	3.59897707238499	3.44880020356437	3.32501210604681	3.60368334142408	0.311436198115196	0.536967146543591	0.790862119761344
Merged-chr19-42146424-4	chr19	42146320	42146520	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183195)	promoter-TSS (NM_183195)	-969.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	5.97717476838059	6.08088189878072	5.91624201408822	6.02458989681322	5.27372829199398	5.83443986653804	5.1688963608253	5.15297974757264	-1.04664928424843	0.000297161699131245	0.00503491373065053
Merged-chr2-93471397-4	chr2	93471318	93471518	+	987.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8468.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	5.24857900500284	5.03445621960714	4.75914597405448	5.09228677092456	5.17841838935354	5.39154877795588	4.93277821562536	5.05837447837368	0.192388971016967	0.548770086439371	0.797649750024352
Merged-chr16-52056852-3	chr16	52056717	52056917	+	683.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	25268.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	4.01432012474974	3.6807225716135	3.9241861883803	3.9412029951083	3.74244154746255	4.04599394964705	3.70615012967935	3.60376021139248	-0.332064889657315	0.473676403787934	0.751327303514682
Merged-chr8-20297008-4	chr8	20296933	20297133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030708, intron 1 of 4)	CpG	399.0	NR_030708	547150.0	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	5.53295714280535	5.71913323674275	6.4878110467643	5.46066609295761	5.08297872903932	5.05636520953716	4.93149343102859	5.82302032565238	-1.00599006431152	0.0094681673902046	0.0759045103482994
Merged-chr9-94361382-3	chr9	94361301	94361501	+	798.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	176680.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	3.14925474748461	3.06237063385336	3.62860902631677	3.38717064543502	3.51342408443274	3.98050581414115	3.61275682396179	3.46652110856464	1.07131775639803	0.0551697783687529	0.245540527387574
Merged-chr11-103332704-4	chr11	103332595	103332795	+	925.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133715, exon 16 of 16)	3' UTR (NM_133715, exon 16 of 16)	12007.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	4.53741016937839	5.17060026615698	4.49400262645912	4.69403391052205	4.57028445361669	4.53261017930818	4.38191096806288	5.03140977230413	-0.220089344424687	0.582207655560423	0.816501953640427
Merged-chr7-56019650-4	chr7	56019542	56019742	+	900.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153578)	promoter-TSS (NM_153578)	-69.0	NM_153578	233280.0	Mm.389901	NM_153578	ENSMUSG00000047037	Nipa1	1110027G09Rik|A830014A18Rik|FSP3|Spg6	non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)	protein-coding	4.72663176035863	4.75597858810905	4.9863883996019	4.66847400705866	4.52852003679597	4.43435323120372	4.2865842980429	4.35118662605628	-0.827398843934798	0.024002902446834	0.144531138927603
Merged-chr16-46011067-4	chr16	46010944	46011144	+	997.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134480)	promoter-TSS (NM_001134480)	-631.0	NM_001134480	433022.0	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	5.46510758282508	5.41569348725191	5.13493447042641	5.60063717843446	5.28711831815891	4.92025855501797	5.29973494713528	5.322477739815	-0.370406542736169	0.224982418070726	0.533383973104412
Merged-chr16-21815069-4	chr16	21814956	21815156	+	810.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4c|LINE|L1	20709.0	NR_037957	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	3.45178046277944	3.70196047842757	3.51134635933092	3.54184961535591	3.60364542793474	3.84321325227074	3.80162619313511	3.45048662965694	0.390655484725961	0.420943644649267	0.713593114282418
Merged-chr11-96065385-4	chr11	96065266	96065466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172300)	promoter-TSS (NM_172300)	-2.0	NM_172300	268470.0	Mm.38802	NM_172300	ENSMUSG00000014349	Ube2z	AW049199|C030047H17Rik|D11Moh35	ubiquitin-conjugating enzyme E2Z	protein-coding	7.11707568302161	7.02279778850899	6.69348621673337	6.84971095572382	6.82864770121319	7.10037085355108	7.07123771185829	6.95770892609253	0.083882706248567	0.681003162345677	0.869036611076104
Merged-chr10-94960203-4	chr10	94960106	94960306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15628.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	5.48251350220526	5.43661638517518	5.37047083131235	5.86306295791743	5.34041442362586	5.28731024371387	5.11999339022681	5.3062899351387	-0.540614302452713	0.0714693348280592	0.286955505029191
Merged-chr6-137582405-4	chr6	137582310	137582510	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	-11401.0	NM_001271587	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	5.18706761883294	5.26304934726176	5.42008531115269	5.42394206479672	5.10905534062633	5.19397558602796	5.06400503232386	5.01442540623217	-0.44296440484003	0.133245971794108	0.406546145412697
Merged-chr3-144110886-4	chr3	144110795	144110995	+	861.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91437.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	4.49207593184922	4.22198988136503	4.53574456641371	4.56031443847187	4.75707415819681	4.27454801891122	4.70851338233687	5.22842690230913	0.696109464672997	0.0828970704491886	0.3127766009808
Merged-chr2-35732215-4	chr2	35732120	35732320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35488.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	7.35373897742004	7.12766250896833	7.423715319009	7.37797458831923	7.31010204859099	7.30031899206783	7.37736252892942	7.50166768318426	0.0628725975995686	0.729064122896692	0.892424767302202
Merged-chr14-10453527-3	chr14	10453400	10453600	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308286)	promoter-TSS (NM_001308286)	-42.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	5.63342842389214	5.50849161710146	5.44027460292043	5.47399101097816	5.74976974847549	5.8079589524879	5.83825439332277	5.52306698621657	0.378834265082208	0.147935360332847	0.429405880969403
Merged-chr9-59578023-4	chr9	59577940	59578140	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175235)	promoter-TSS (NM_175235)	-297.0	NM_175235	76183.0	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	4.75763208048468	4.81697591698716	5.01307695566336	4.77730833076632	5.29167467750127	4.72109305466486	4.81359321169179	5.22124807186181	0.410969563025791	0.228387324839474	0.537276709348214
Merged-chr5-3462224-4	chr5	3462129	3462329	+	878.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	-81604.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	4.38433373203001	4.33746205155721	4.3434606318528	3.98618041628048	4.27314105267022	4.55506067640945	4.19158162170518	4.11020447354933	0.0809621189817319	0.843856798906254	0.940865963179013
Merged-chr7-90215463-4	chr7	90215413	90215613	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	49919.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	4.58699247909175	4.59487911118333	4.99920183910018	4.67256814928776	4.56073198990544	4.17019429011666	4.75280394989189	4.58476087628462	-0.39723796958479	0.294611243934199	0.606757146262908
Merged-chr3-157764012-4	chr3	157763914	157764114	+	756.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161049.0	NM_145953	107869.0	Mm.28301	NM_145953	ENSMUSG00000028179	Cth	0610010I13Rik|AI314617|BC019483|CSE|Cys3	cystathionase (cystathionine gamma-lyase)	protein-coding	4.25246979837333	3.69542547469616	4.12824382188472	4.36755815043381	3.78650430599434	3.77755201461421	3.97262943196175	4.03504980504299	-0.670713614381852	0.149556202974815	0.431838910046017
Merged-chr6-67102227-3	chr6	67102120	67102320	+	762.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64813.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	3.46556590775219	3.23746949440511	3.51449077091359	3.59848466241576	2.96904443941175	3.10411648237763	3.05406080257349	3.12773516068859	-1.61117079615783	0.00556036985863712	0.051360182477022
Merged-chr15-61983537-4	chr15	61983424	61983624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1817.0	NM_001177354	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	7.38193329566849	7.49371593837754	7.30176787643576	7.54705052940762	7.3802638043848	7.28637599483706	7.27581182166121	7.05390433157909	-0.245797784607243	0.183973202006312	0.48118720311631
Merged-chr2-140395963-3	chr2	140395882	140396082	+	974.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028387, intron 1 of 3)	CpG	547.0	NM_028387	72899.0	Mm.229466	NM_028387	ENSMUSG00000068205	Macrod2	1110033L15Rik|2610107G07Rik|2900006F19Rik	MACRO domain containing 2	protein-coding	4.08458770062811	3.69948767856269	4.39542191316269	4.1709225283277	3.96172006612574	3.96532068366719	3.66011595704121	3.54557816058924	-0.856428222058494	0.0822241487174399	0.311313992635033
Merged-chr6-83008799-4	chr6	83008693	83008893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 7 of 9)	intron (NM_033079, intron 7 of 9)	24678.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	7.06887361833349	7.21194857849408	7.13068901857806	7.34052221628591	7.29414426231291	7.1442961554354	7.34025031186634	7.41942987465352	0.137071100575412	0.461935379801909	0.743501704400988
Merged-chr12-17712733-8	chr12	17712634	17712834	+	965.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	L1MC5a|LINE|L1	21925.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	4.12426676340544	4.05252682837165	4.17425663125375	4.1959651162259	4.38911768501754	4.39527162087896	4.4915695130216	4.5100611670437	0.728742020547	0.0542954325958451	0.243349260851462
Merged-chr8-39644749-4	chr8	39644637	39644837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2059.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	6.615787370873	6.66624343821134	6.15977680297182	6.86253013231425	6.40422454242239	6.61927428525487	5.8466269037294	5.84567711488691	-0.566099577937651	0.0494791177087449	0.230178128110654
Merged-chr9-105642957-4	chr9	105642847	105643047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081309)	promoter-TSS (NM_001081309)	-48.0	NM_001081309	75669.0	Mm.274830	NM_029380	ENSMUSG00000032571	Pik3r4	2210010O15Rik|C730038E05Rik|C85833|D9Ertd418e|Vps15|p150	phosphoinositide-3-kinase regulatory subunit 4	protein-coding	6.92026931712429	6.96557337696306	6.34809512150275	6.72777101337579	7.01121608628777	7.0049150018879	6.83437335037954	6.72343388624325	0.194509120137317	0.384323326998567	0.685943584066575
Merged-chr2-77197296-4	chr2	77197193	77197393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 12 of 17)	intron (NM_175465, intron 12 of 17)	-26658.0	NM_001025576	545428.0	Mm.26579	NM_001025576	ENSMUSG00000044033	Ccdc141	2610301F02Rik|CAMDI	coiled-coil domain containing 141	protein-coding	5.9996588174401	5.93369182721171	6.34748326100189	6.33816130438388	5.68316159296454	5.57366543074168	5.66365223631886	5.57647288122072	-0.882570623022237	0.000695303550167142	0.0100837431534937
Merged-chr4-140699822-4	chr4	140699687	140699887	+	970.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1686.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	4.85785512341648	5.39557468552686	5.0016891918465	5.30070413369796	5.00248932383205	4.83351968315816	4.54268896916874	4.81708907294901	-0.688932332013385	0.0474277377274368	0.224357611502351
Merged-chr9-20740631-4	chr9	20740521	20740721	+	930.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357639, intron 1 of 5)	intron (NM_001357639, intron 1 of 5)	5675.0	NM_001357639	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	5.07553836801598	4.78563866952071	4.86750425785387	4.70623606320559	5.21671709387693	5.1150191830376	4.98615379233937	5.13546067358536	0.528971518686332	0.0939292558342684	0.335277877261288
Merged-chr12-3854704-3	chr12	3854593	3854793	+	819.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 3 of 22)	intron (NM_007872, intron 3 of 22)	7551.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	3.65082792278443	3.23756869917681	4.26924601694625	3.57232378632793	3.52593778416439	3.82861455778696	3.8433826904426	3.95117948669418	0.175483013075931	0.753157367454558	0.902768018969164
Merged-chr1-45882363-3	chr1	45882245	45882445	+	957.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43249.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	3.11727040437719	3.21066160437586	3.33872635589526	3.14234607328418	3.05082277649568	3.02976287619975	3.22072240787721	3.17513407674974	-0.32262842527014	0.561943306482462	0.805238039236207
Merged-chr10-8771028-1	chr10	8770928	8771128	+	648.5	f0_balb.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	115042.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.73467852792403	3.6594670434854	3.59029479268611	3.37821518405704	3.72765682824026	3.41862575853814	3.09116507953754	3.36557245352689	-0.533891235361131	0.341745127456744	0.650733699666772
Merged-chr8-22166405-4	chr8	22166338	22166538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011848)	promoter-TSS (NM_011848)	-3.0	NM_011848	23954.0	Mm.41413	NM_011848	ENSMUSG00000031478	Nek3	-	NIMA (never in mitosis gene a)-related expressed kinase 3	protein-coding	7.8713158121664	8.14704619705945	8.1634575980687	7.87648764959809	8.04726013919858	8.18030461837219	8.35497448196981	8.12752456595872	0.207894185960858	0.227779333966966	0.536465946363434
Merged-chr9-45312019-4	chr9	45311909	45312109	+	897.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7091.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	3.92772788555751	4.06026926479099	3.74477163991667	4.21164443817278	4.64381358459317	4.26667620548318	4.46011890256411	4.58596245070506	1.16957470993495	0.00631880925175983	0.0563405391119896
Merged-chr18-38144855-4	chr18	38144764	38144964	+	930.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64898.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	4.68202925817785	4.58407060088813	4.56025929725199	4.73012958148146	4.50461946096013	4.81645934600304	4.96699998938726	4.86100095714524	0.29913167755645	0.393210143082835	0.692367387227111
Merged-chr15-59426957-3	chr15	59426859	59427059	+	837.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 3 of 4)	intron (NM_001164604, intron 3 of 4)	52761.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	4.48582275384319	4.60264741230606	4.20289705578941	4.11202043543063	3.97762913907306	4.13184601212282	4.09111045292634	3.89515398663442	-0.854548732481825	0.0464676100535698	0.221505358692944
Merged-chr10-22000721-4	chr10	22000558	22000758	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001161850)	TTS (NM_001161850)	5992.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	5.13654120913504	5.31722013015023	4.9780867603211	4.87180637770406	4.68726532321773	5.11701646685161	4.60808057040663	4.6697488793414	-0.600599020059548	0.0856419930821315	0.318707445413073
Merged-chr12-85973733-4	chr12	85973621	85973821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	105320.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	6.31156985316763	5.75978992910712	6.74259761709131	7.05655070183646	5.73229434329433	5.57775425708862	6.57134095544525	6.27100071270603	-0.674103107272251	0.203660906696319	0.506636133147077
Merged-chr2-160304173-4	chr2	160304071	160304271	+	891.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	23323.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	5.10101316178815	4.61057632846549	4.64429833010685	4.9930991486937	4.39830069475037	4.35975423044403	4.76978465106909	4.28057346227215	-0.855720041909916	0.0256478872837523	0.151050055350836
Merged-chr13-98817443-4	chr13	98817333	98817533	+	915.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-1984.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	4.62061459383661	4.34679972437478	4.19269897852733	3.81171254973678	4.67436161241276	4.46705913546518	4.63456088839691	4.50412700755994	0.735715660991198	0.078424069085467	0.3031258989164
Merged-chr6-116694177-4	chr6	116694079	116694279	+	937.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178768, exon 5 of 5)	3' UTR (NM_178768, exon 5 of 5)	-20343.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	4.6597955029124	4.22623834827763	4.25845299459814	4.42608385701818	4.81057884416189	4.49015942383744	4.97072571108028	4.99238740022066	0.923635180870672	0.0127203553662749	0.0936902084660679
Merged-chr2-118660150-4	chr2	118660052	118660252	+	675.604126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3425.0	NM_001033254	214230.0	Mm.241857	NM_001033254	ENSMUSG00000074923	Pak6	4732456M09	p21 (RAC1) activated kinase 6	protein-coding	3.82576363530549	3.99992849507339	3.67657461167902	3.76470969279473	3.7075540172224	3.73996436561798	3.30335295685594	3.50540538257849	-0.746937705414756	0.135712469517582	0.410088886718184
Merged-chr4-144956042-3	chr4	144955943	144956143	+	927.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	62906.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	4.24798156423132	4.14350419148249	4.51507102490903	4.35806451199875	3.76016607954298	4.14114263166931	3.9487074337866	3.85269269848321	-1.05819561766587	0.0140038170902441	0.100017830289633
Merged-chr10-57761506-4	chr10	57761406	57761606	+	928.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23417.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	4.84691027773248	4.53542654302382	4.70812468994432	4.92503370444354	4.56483103495774	4.6831201472851	4.40003968086161	4.32100292183467	-0.589739855436618	0.107075460493075	0.361004367299951
Merged-chr5-38220469-4	chr5	38220375	38220575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025281)	promoter-TSS (NM_025281)	-7.0	NM_025281	17089.0	Mm.28560	NM_025281	ENSMUSG00000067367	Lyar	MLZ-264	Ly1 antibody reactive clone	protein-coding	7.99301510808406	7.87477473039537	7.55673336219589	8.10755343676703	7.98908464203772	8.37361769441212	8.09162187003688	8.25291578934211	0.352092262541836	0.0654283745874939	0.272298794057372
Merged-chr11-101467622-4	chr11	101467531	101467731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009708)	promoter-TSS (NM_009708)	-544.0	NM_009708	11858.0	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn|rho7	Rho family GTPase 2	protein-coding	7.15618276137859	6.96887581201163	6.65221977193924	6.96426661526433	6.81557795920077	6.5327887588876	6.57119255358769	6.48212448360286	-0.474009579417335	0.0303874544005752	0.168677268718595
Merged-chr2-32083321-3	chr2	32083211	32083411	+	917.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151493, exon 2 of 6)	non-coding (NR_151493, exon 2 of 6)	394.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	3.98861816449112	3.88006652095529	4.34246753919217	3.90041369644872	4.09413487986702	3.88986660218701	4.11504016526776	4.41418445164749	0.287147392451903	0.512821229350822	0.776017039843318
Merged-chr18-53265078-4	chr18	53264992	53265192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	RLTR30D2_MM|LTR|ERV1	19430.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	7.74044672397483	7.64147603749457	7.94723845773899	7.28036156817648	7.65599202801356	7.61548190893954	7.35120816634991	7.17183668086112	-0.261362445953516	0.233295547605474	0.542902010102659
Merged-chr9-118479309-2	chr9	118479209	118479409	+	716.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010136, exon 1 of 6)	exon (NM_010136, exon 1 of 6)	1120.0	NM_010136	13813.0	Mm.200692	NM_010136	ENSMUSG00000032446	Eomes	C77258|TBR-2|Tbr2	eomesodermin	protein-coding	2.73246576088144	2.81992979138119	2.51118837976508	2.68280874055199	3.02866743885477	2.97121407237639	2.85223063439498	3.08671897794601	1.3351867286135	0.0346556410890015	0.184298516937481
Merged-chr8-88295240-2	chr8	88295140	88295340	+	963.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037724, intron 2 of 27)	intron (NM_001037724, intron 2 of 27)	1036.0	NM_001037724	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	3.38334717207033	3.34777762072581	3.53492714703081	3.18604752176982	3.29744006663723	3.38514857054594	3.00677380046605	3.14837612697351	-0.525409892792194	0.348892213704109	0.656561941604399
Merged-chr8-107031265-4	chr8	107031199	107031399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_126165)	promoter-TSS (NM_126165)	-27.0	NM_126165	116733.0	Mm.236004	NM_126165	ENSMUSG00000031913	Vps4a	4930589C15Rik|AI325971|AW553189	vacuolar protein sorting 4A	protein-coding	7.37375894908946	7.30031953606471	6.97113095455525	7.25582923674157	7.37716323225203	7.63745379844815	7.35787323210423	7.20126608637904	0.221413323643383	0.258826062761523	0.570600561256928
Merged-chr15-53283149-3	chr15	53283035	53283235	+	993.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	63048.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	4.51976690581796	4.07138154605321	4.25207571441163	4.68219523044174	3.58032799928168	3.9788134478725	3.94977990487172	3.963821011754	-1.4453429915712	0.00174799603431208	0.0210703826801523
Merged-chr7-115616155-4	chr7	115616056	115616256	+	837.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025559, intron 7 of 15)	intron (NM_001025559, intron 7 of 15)	185453.0	NM_001277328	20679.0	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	4.38837080241928	4.23200353268992	3.75617410536964	4.04822649788718	4.06393367919665	4.3068622717814	4.28983354740432	4.13195152092071	0.189088193263193	0.658956046670628	0.858075830194168
Merged-chr2-126607705-4	chr2	126607594	126607794	+	987.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008230, intron 2 of 11)	intron (NM_008230, intron 2 of 11)	10984.0	NM_008230	15186.0	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	4.99023895865497	5.2154246391368	4.83607620521801	5.05666645423327	5.27948546812484	5.3662723649845	5.16778705147152	5.33660805987449	0.466348854325189	0.120227826628861	0.383810790826571
Merged-chr3-109341748-4	chr3	109341646	109341846	+	990.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	1063.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.86455603561174	4.77946639166055	4.93660258424864	5.18868989879155	4.82025460650129	4.96438447037675	4.9797110223154	4.74735417070325	-0.182368264625206	0.584559222500758	0.817677571402378
Merged-chr3-54755562-3	chr3	54755493	54755693	+	882.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019483)	promoter-TSS (NM_019483)	11.0	NM_019483	55994.0	Mm.244353	NM_019483	ENSMUSG00000027796	Smad9	MADH6|Madh8|Madh9|Smad8	SMAD family member 9	protein-coding	3.42986892470099	3.25799401969574	3.48471974666589	3.61701632854995	3.12059585440181	3.3645271633444	3.52213424064028	3.5848407489496	-0.191500898575957	0.723633303869948	0.889715420547812
Merged-chr4-141873860-3	chr4	141873782	141873982	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	1038.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	4.51721592380271	4.50371542009433	4.3372612966232	4.1536736226893	4.75739501112826	4.56220108090847	4.72580385173342	4.97005827174836	0.86943659125847	0.0170930438430059	0.115007634719852
Merged-chr14-63126632-2	chr14	63126532	63126732	+	938.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	4170.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	3.44370516201768	3.39779513861135	3.27776877681591	2.95910726704402	3.10335307571667	3.19964767144109	3.42954178082552	3.54203586740439	0.190870669073812	0.739522452386775	0.897333298757919
Merged-chr2-157448026-3	chr2	157447924	157448124	+	906.0277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 2 of 13)	B3A|SINE|B2	23731.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	4.45672979863258	4.88775835832399	4.53679210383146	4.78670955991207	4.40290571581672	4.15037509588397	4.00854873044577	3.90373149283583	-1.28387223899323	0.00248648815703211	0.0276442474335577
Merged-chr1-170795965-4	chr1	170795868	170796068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 10 of 15)	intron (NM_001081304, intron 10 of 15)	71803.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	6.84108094989548	6.61671951802114	6.85530687973561	6.76812270503895	6.61670611653247	6.65750368219384	6.17708681174321	6.62388464864854	-0.339412919994495	0.122067358151294	0.387242288214953
Merged-chr17-56765076-6	chr17	56764947	56765147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360405, intron 1 of 11)	CpG	296.0	NM_144858	224907.0	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	6.26915466814262	6.59644700741981	6.42322734902795	6.36585543458757	6.57635937496271	6.85840073475707	6.61912801844115	6.91712952685548	0.471660132238848	0.0306946925347938	0.169878138368914
Merged-chr14-47361936-7	chr14	47361791	47361991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-11969.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	5.10263414406139	4.98323631118998	5.1849608159213	5.83217939753331	6.55259925538927	6.25016809090463	6.55802091576788	6.40210771638487	1.72372899736819	1.67754395466787e-07	6.86635429265696e-06
Merged-chr7-27591011-2	chr7	27590911	27591111	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110208)	promoter-TSS (NM_001110208)	-541.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	3.53787450440315	3.57166441853819	3.37114216216096	2.834821619742	3.61056705060773	3.65726315375187	3.41564187281766	3.36934204470098	0.538377739255409	0.361960192095622	0.667270065866573
Merged-chr17-56075067-4	chr17	56074955	56075155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024432, exon 2 of 12)	5' UTR (NM_024432, exon 2 of 12)	4278.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	7.61809048033329	7.69975327427348	7.57498463826489	7.58193326511811	7.83712433910407	7.91303030326265	7.74525596013176	7.77776104601216	0.263773044973549	0.10486466357369	0.35617915806724
Merged-chr7-44055679-3	chr7	44055550	44055750	+	843.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020268, exon 3 of 5)	exon (NM_020268, exon 3 of 5)	3360.0	NM_020268	16619.0	Mm.445911	NM_020268	ENSMUSG00000063177	Klk1b27	Gk27|Klk21l|Klk27|mGK-27	kallikrein 1-related peptidase b27	protein-coding	3.34611984988906	3.15631586777111	3.9276297519506	3.62155119436287	2.52461028714912	2.70837078738623	2.67456111269209	2.68011421307414	-6.43755800961077	1.48437361230267e-08	7.62310457071371e-07
Merged-chr5-146921422-4	chr5	146921333	146921533	+	678.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27224.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	3.3597615259172	3.63271967753923	3.55494488865445	3.70774912805899	3.99040687077305	3.84487619135096	3.90477266184486	4.08990113410123	1.10097757456762	0.0202794862370253	0.129238101158064
Merged-chr3-27461269-4	chr3	27461167	27461367	+	990.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 18 of 26)	intron (NM_001356953, intron 18 of 26)	89916.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	4.72615191339995	4.95352221806369	4.30177878919271	5.08783086757015	4.72323072665098	5.18643819642834	4.8908197602685	5.07459289031853	0.311540594339637	0.413358012077276	0.708338880200893
Merged-chr3-84570632-3	chr3	84570542	84570742	+	729.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293801, intron 1 of 7)	intron (NM_001293801, intron 1 of 7)	11983.0	NM_001293801	99889.0	Mm.316536	NM_001081093	ENSMUSG00000074513	Arfip1	2310030I10Rik|Arfaptin|D3Ertd598e	ADP-ribosylation factor interacting protein 1	protein-coding	3.6277901147034	3.44460189580043	3.68630162321907	3.29831291054352	4.23087661151351	3.68850503620566	4.28431042552543	4.03097513719729	1.69124528783025	0.000408961506735586	0.00655471089572895
Merged-chr8-120737453-4	chr8	120737372	120737572	+	979.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008320, intron 1 of 8)	intron (NM_008320, intron 1 of 8)	1114.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	4.8372906209315	4.99774457780048	5.43851386498234	5.78244377547503	5.35909330066171	5.0601794056129	5.35711740463848	5.13637786591729	-0.181707341757208	0.615062543935788	0.834271521286409
Merged-chr14-79533903-3	chr14	79533787	79533987	+	799.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	18213.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	3.77575282461058	3.49252922478078	3.72663151511978	3.79004589479423	3.65207698194355	3.79263616249166	3.71127752921473	3.56310095242912	-0.0780381992909563	0.868373003341213	0.950731730651165
Merged-chr13-70038454-3	chr13	70038330	70038530	+	864.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131156, intron 2 of 2)	intron (NR_131156, intron 2 of 2)	-10082.0	NR_045965	74280.0	Mm.273343	NR_045965	ENSMUSG00000099639	1700084F23Rik	1700003E18Rik|4930589D02Rik	RIKEN cDNA 1700084F23 gene	ncRNA	2.6198378593458	2.47953817889413	2.53602569834689	2.28752031936777	3.26497269439926	3.22182719146216	3.48179779996941	3.31445734952823	4.78162356779719	6.92964612746233e-10	4.59688053780654e-08
Merged-chr4-141963374-4	chr4	141963264	141963464	+	815.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 9 of 31)	intron (NM_177868, intron 9 of 31)	-19628.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	3.59062949436437	3.91032599881343	3.5296090393691	3.71059113895998	4.10274417660176	3.70849817131805	3.93832289218373	3.99786770156604	0.723484348025698	0.118547004303188	0.380903881376893
Merged-chr8-78510393-4	chr8	78510291	78510491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104094, intron 1 of 9)	intron (NR_104094, intron 1 of 9)	1063.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	5.06403855000798	5.30737969322943	5.38471530287144	5.46260193159542	5.08288086605495	5.31166548079922	5.32943717165221	5.51475976572336	-0.0268590907568969	0.929036749182198	0.974317157505369
Merged-chr8-35104908-2	chr8	35104826	35105026	+	818.599976	f0_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-139236.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	3.79347943524492	3.72290809844228	3.69589893734689	3.67505636782113	3.30208441382385	3.58961385854849	3.72995661819736	3.64178736621682	-0.483998257824221	0.323321926716392	0.634774001427281
Merged-chr17-10394914-7	chr17	10394820	10395020	+	924.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61296.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	3.91786305318795	3.91372429927937	4.2520870779275	4.2824237829802	4.31469184636075	4.0402094362453	4.1906395567807	4.11705892908915	0.155163144850237	0.714319796333729	0.885778225100574
Merged-chr7-128050894-2	chr7	128050794	128050994	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-11746.0	NM_001082960	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	3.2591713833716	3.19083417300905	3.46089530761607	3.10368189869674	3.39449661923032	3.19143634345914	2.94316312179403	3.01692713907664	-0.37698042760154	0.524256722795662	0.782816280431148
Merged-chr4-152178077-4	chr4	152177968	152178168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133348)	promoter-TSS (NM_133348)	-32.0	NM_133348	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	7.76461950703695	7.59585508081012	7.65343218876283	7.60702257299091	7.66022538193883	7.54938100609029	7.85204951225696	7.50592442959669	-0.00364061970858145	0.983363397580423	0.993990503512979
Merged-chr19-16050333-3	chr19	16050226	16050426	+	997.7666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65251.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	3.61420022706648	3.49310149796838	3.90511566042697	3.43485113480054	4.3867490768398	4.22691179592358	4.28546101337617	4.26486677648739	1.91112163361483	1.29477069311518e-05	0.000348301145749227
Merged-chr10-21908160-7	chr10	21908056	21908256	+	759.464294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 1 of 13)	intron (NM_001161845, intron 1 of 13)	25972.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	2.90025620688585	2.8044554195924	2.96103908310244	2.58940811110879	3.03642243704645	2.87814701587194	3.0610261691834	2.83593263603941	0.665580331130537	0.285229353298164	0.596953252281083
Merged-chr6-114892270-4	chr6	114892153	114892353	+	961.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	29568.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	4.56552884487691	4.83811263921771	4.64294561961151	4.83721772878599	4.0617335078215	4.33213958887831	4.18628766276108	4.60214220800768	-0.991410383752807	0.0108548649146412	0.0837493524918862
Merged-chr18-10610276-4	chr18	10610188	10610388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081222)	promoter-TSS (NM_001081222)	64.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	8.15101193558913	8.5235507402247	8.54424550905521	8.35868802618078	8.45633028551005	8.57340524601933	8.52793678647399	8.13411719647133	0.0383656104137311	0.828737976033924	0.9342442458901
Merged-chr6-66896799-1	chr6	66896699	66896899	+	1000.0	f0_balb.idr	promoter-TSS (NM_001177558)	promoter-TSS (NM_001177558)	-92.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	5.42535473448095	5.19820555113097	5.42629990768622	5.34716610316716	4.93875209040183	5.04837747166716	5.13624675108651	5.25243082731866	-0.479067547938192	0.107769564925144	0.36207542064603
Merged-chr2-138258123-4	chr2	138258036	138258236	+	933.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025431, intron 1 of 4)	intron (NM_001025431, intron 1 of 4)	1552.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	4.92547086806089	4.98228271562328	4.57756939351726	4.77936431145385	5.07141438546593	5.09759655329565	4.51229724271711	4.66061741970303	0.0853653077086938	0.813035299636441	0.927762470026167
Merged-chr10-19491982-3	chr10	19491874	19492074	+	740.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152784, intron 2 of 3)	intron (NR_152784, intron 2 of 3)	-2669.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	3.22571869787763	3.11687784116954	3.33634025083308	3.24860638111815	3.22465162322452	3.21474226109125	3.26978855891638	3.16563982444767	-0.0539488255565451	0.919699980975749	0.97038770468675
Merged-chr9-59725746-4	chr9	59725642	59725842	+	937.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17978.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	5.06437968661502	4.55512919439498	4.76261616180973	4.98188362683786	4.90097059595	4.44438297092362	4.53670887689206	5.06172563507016	-0.188949173092426	0.614034533206237	0.833609107549057
Merged-chr16-35734242-4	chr16	35734140	35734340	+	834.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 3 of 8)	intron (NM_153550, intron 3 of 8)	35116.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	4.0484723829537	3.84675152096822	3.89450482064262	4.38973564568915	4.44098584349895	4.01648689273604	4.32983756250022	3.77851035372324	0.245119410113011	0.607583636368646	0.830072719800728
Merged-chr5-100615736-3	chr5	100615641	100615841	+	838.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43536.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	3.52329221615408	3.63574412354651	3.5237606344706	3.277733119955	4.14987680918006	4.1387879570297	3.56754279068039	3.26161693957533	1.03414253617064	0.0618855693112464	0.263185794468412
Merged-chr1-54585403-4	chr1	54585309	54585509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27725.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	5.93530509436543	5.90828641846913	6.40695345946577	6.29696957162043	6.10695366038199	5.77813638817831	5.9060825736189	5.70810187195671	-0.418090876517324	0.116744036895001	0.378058407741095
Merged-chr13-111936147-4	chr13	111936041	111936241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68205.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	8.35097424948006	8.17391183254856	8.49835901078696	8.43939434332878	8.18584804386207	8.02306595402917	8.32917285579505	8.25835062391886	-0.213008241127084	0.196130956425379	0.497142134936562
Merged-chr3-89378695-6	chr3	89378644	89378844	+	980.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001355206, exon 4 of 4)	3' UTR (NM_001355206, exon 4 of 4)	8927.0	NM_001355212	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	4.81719702996169	4.44060304039577	4.15270848303893	4.43789938580037	4.52766793134035	4.85110926023888	4.42368376412386	4.44096072632748	0.198966181542396	0.61132435123046	0.832251855180034
Merged-chr11-49994645-4	chr11	49994528	49994728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30703.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	5.17303084674071	5.54582899458694	5.138244755171	5.55323292222181	5.58633587448873	5.63099540345199	5.65922488104806	5.42462577647726	0.330874372320026	0.254931406190693	0.566453223489023
Merged-chr13-92038216-4	chr13	92038145	92038345	+	852.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50203.0	NM_009027	19418.0	Mm.248630	NM_009027	ENSMUSG00000021708	Rasgrf2	6330417G04Rik|AW048350|Grf2|Ras-GRF2	RAS protein-specific guanine nucleotide-releasing factor 2	protein-coding	4.41913810413655	4.08260910094518	4.12802776234494	4.60421182176744	4.22100585443687	4.0483891520472	4.01391803968375	3.61860646337216	-0.855424603452864	0.067219013256937	0.276624878500418
Merged-chr8-122561393-4	chr8	122561289	122561489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6626.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	6.4567547677881	5.97741260450011	6.83229968219226	7.25661432318696	5.94366413662675	5.82520859343062	6.26454083903858	6.40190729314747	-0.883394543221228	0.00590132603171484	0.0536241296996139
Merged-chr4-8888486-4	chr4	8888403	8888603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137179.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	7.06154096890878	6.8241579670452	7.35793987652895	7.322783936384	7.0884877823503	6.9202199740992	7.51003161590812	7.30318311821546	0.081919366921424	0.715812629946628	0.886371813543908
Merged-chr5-140818806-3	chr5	140818701	140818901	+	708.849976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	11630.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	3.88263866361479	3.84763561116805	3.97378761667086	3.89751253352347	3.5570667561691	3.68183710248279	3.6103145537517	3.73182987181056	-0.783908008316648	0.0872205898975682	0.322122885296477
Merged-chr5-64463822-4	chr5	64463733	64463933	+	904.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040681, intron 1 of 2)	MLT1C|LTR|ERVL-MaLR	4109.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	4.45753206119583	4.62057320342839	4.61572794878831	3.86811726238376	5.82878111077951	6.17510742364303	5.84350107412962	5.57010339989181	2.81479753502959	1.18513814298887e-15	2.09843153929863e-13
Merged-chr15-63704882-4	chr15	63704787	63704987	+	891.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103852.0	NM_031378	83492.0	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	4.33458558269214	4.37084752973546	4.67886237993289	4.94944758030159	4.23499219931444	3.92649869542043	3.85214352692202	4.28797370381479	-1.26651037653762	0.00436757005899119	0.0429272672229956
Merged-chr10-44470548-4	chr10	44470429	44470629	+	804.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11781.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	3.73423857112961	3.40325948045433	3.73480512769439	3.40417153104681	3.62288595331904	3.33079023973955	3.51600314745032	3.73251382379231	-0.0231670930419355	0.963883375479209	0.987183337648521
Merged-chr2-133407980-3	chr2	133407905	133408105	+	847.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144154.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	3.49910549734917	3.58481662216225	3.83033818170554	3.65515738277476	2.95817387750185	3.3780649415774	3.18745789983213	3.44257305524421	-1.44593975098709	0.0110408619163347	0.0846719224458251
Merged-chr7-24608287-4	chr7	24608195	24608395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023154, intron 6 of 7)	intron (NM_023154, intron 6 of 7)	-3033.0	NM_001102613	232970.0	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	6.69652666655952	6.87529327871564	6.42234623870226	6.84259863504581	7.07664233942479	6.85962654896835	7.36416462926231	6.79675540040969	0.44188319666753	0.0524089455539101	0.238487171434712
Merged-chr2-9878614-4	chr2	9878516	9878716	+	869.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008091)	promoter-TSS (NM_008091)	-16.0	NM_001355112	14462.0	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	4.00541664793035	3.88318935893663	4.05044844185472	3.81955963368856	3.88159115295511	3.69872638978896	3.74258065080219	4.00355550934207	-0.266866735778831	0.549646893682851	0.798076705263997
Merged-chr13-63255829-4	chr13	63255673	63255873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	15744.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	5.82325025079706	5.54928498932079	5.46044628063385	6.02973024293238	5.40034720913019	5.44629577576492	5.83861915494145	5.82012211033555	-0.190995916281837	0.521652361739755	0.781517826530151
Merged-chr15-76473740-2	chr15	76473616	76473816	+	703.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_013481, intron 2 of 15)	intron (NM_013481, intron 2 of 15)	3553.0	NM_013481	12181.0	Mm.4283	NM_013481	ENSMUSG00000022557	Bop1	AU020183|AW146150|D18861|Erb1p|Kiaa0124|mKIAA0124	block of proliferation 1	protein-coding	2.07819216815212	2.30484257429646	2.16174170354138	1.89083876129244	2.34924165752598	2.49566155495858	2.62500227325677	2.74499185752499	3.03584476672602	0.000564732509293803	0.0085109242597975
Merged-chr4-72199145-4	chr4	72199065	72199265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285530, intron 2 of 17)	intron (NM_001285530, intron 2 of 17)	1728.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	7.4393561852907	7.48287178502009	7.43070812113545	7.65294224966053	7.57711145141422	7.78414522280911	7.89434821638513	7.53055058380293	0.248477751438425	0.173509234575638	0.467581910161457
Merged-chr11-50211744-4	chr11	50211631	50211831	+	977.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011018)	promoter-TSS (NM_011018)	-911.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	4.48458150680122	4.56732466118112	4.09771342368265	4.45654084118806	4.56544818388098	4.61618393628183	4.50566422580284	4.77953595263793	0.445078123792015	0.231694423274654	0.541246385108847
Merged-chr18-60803723-4	chr18	60803623	60803823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010545)	promoter-TSS (NM_010545)	-126.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	8.11297564136862	8.44597986182445	7.63410980222627	7.51726760201224	8.71729106305494	8.598928224397	8.49655985828474	8.38474043863356	0.732595722886159	0.00143148233434319	0.0179702788494204
Merged-chr11-100545622-4	chr11	100545492	100545692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028918)	promoter-TSS (NM_028918)	-40.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	6.78282065563319	6.4378090953274	6.19683140882679	6.49152491681723	6.45406575101748	6.5892137279411	6.8640729112791	6.54417598769825	0.181186938479434	0.43759040128435	0.725755822849462
Merged-chr7-112225798-4	chr7	112225721	112225921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177282)	promoter-TSS (NM_177282)	-15.0	NM_177282	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	7.39904644938938	7.41912756270783	7.34377433416058	7.69984614940436	6.46418676745956	6.55797381168171	6.8886487815563	6.61605325913611	-1.17061553740319	1.83546701058702e-08	9.27888539393278e-07
Merged-chr6-122308766-4	chr6	122308647	122308847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010749)	promoter-TSS (NM_010749)	27.0	NM_010749	17113.0	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	9.22811003169894	9.30773978092811	9.27143117547196	9.1567221383765	9.19609137969165	9.32233136906862	9.38832099197357	9.24202011102041	0.0585540038167531	0.670471071745349	0.864117122035239
Merged-chr15-28159111-4	chr15	28158991	28159191	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44675.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	5.68901087571987	5.26162449459402	5.4394597499321	5.54781063338048	5.03318639399978	5.07729375224662	5.70516453824167	5.15803483712324	-0.399637381951614	0.212369144986834	0.517342055876223
Merged-chr11-59165873-4	chr11	59165787	59165987	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2142.0	NM_173785	216792.0	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	5.75487583975514	5.28237329369773	5.43317008254081	5.62122820940018	5.03378942636607	5.18046596264216	5.3484477997656	5.63741168288597	-0.397635237856178	0.199391772287215	0.501236339736241
Merged-chr5-137510694-3	chr5	137510591	137510791	+	868.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8189.0	NM_031408	57330.0	Mm.268344	NM_031408	ENSMUSG00000029714	Gigyf1	Perq1|mKIAA4110	GRB10 interacting GYF protein 1	protein-coding	3.41746232077967	3.89158003134101	3.83688726034408	3.18297015401378	3.39018414348283	3.47112157790621	3.77418545332828	3.58915173852505	-0.15287389238479	0.78241536342736	0.91529005173258
Merged-chr11-51935252-4	chr11	51935145	51935345	+	943.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-32386.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	4.61262455695115	4.67528673748604	4.85579997732302	4.70258231197455	5.10362714029467	5.10007959763208	5.06534743518036	5.02439207460782	0.723668892779258	0.0214310516268299	0.134033988555147
Merged-chr1-85985925-4	chr1	85985826	85986026	+	935.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24871.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	4.68268799750712	4.98031756884668	4.81073111737733	4.65995353077267	5.59812558930915	5.24111622656132	5.38530538214387	4.88597317501864	1.01375475157885	0.0024390232600988	0.0272581624478838
Merged-chr10-60779864-4	chr10	60779771	60779971	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029770, intron 3 of 16)	intron (NM_029770, intron 3 of 16)	-27089.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	4.06613380969069	3.85486481798331	3.63005772904757	3.64500180147154	3.86768004844727	3.913046935518	3.4972850235427	3.79056258753084	-0.0724139954201478	0.880217089953083	0.955123602336575
Merged-chr6-149343953-4	chr6	149343831	149344031	+	979.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34517.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	5.26580043954063	5.02417359504226	4.73183778025652	5.07793912697044	5.47621509997761	5.44245072746706	5.7248659135051	5.7290249319917	0.99123283679437	0.000967531800125912	0.0130902767536898
Merged-chr7-28376516-4	chr7	28376398	28376598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011756)	TTS (NM_011756)	2730.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	7.41102406919006	7.20153914440191	7.8445909967353	7.53909034369119	7.63574966173241	7.70567611182194	7.94184770644696	7.56838015303945	0.26454991317412	0.194696463560754	0.495222254852448
Merged-chr2-6323320-4	chr2	6323199	6323399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080548, intron 1 of 14)	CpG	542.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	4.96330949038652	5.07651195551383	5.03717811614029	5.21803768030649	5.14246813241392	5.52166935786683	5.35080264565206	5.10283782394615	0.357414642431695	0.245303371786604	0.556348735036919
Merged-chr5-9073405-2	chr5	9073305	9073505	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27332.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	3.01758209343379	3.05549885403732	3.15451863878307	3.07797845165791	3.41919457971386	3.61423399473349	3.52955865342118	3.4942870693436	1.57518095120603	0.00284528857937313	0.0306809264946523
Merged-chr3-27194519-2	chr3	27194419	27194619	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	PB1D10|SINE|Alu	11515.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	3.24658117495254	3.1855126362357	3.5074786667983	3.17168396266294	3.08022425904327	3.35930605993655	3.1152026055905	3.35644466727776	-0.186713993386571	0.736627305538365	0.896043754662457
Merged-chr5-90862120-4	chr5	90862019	90862219	+	878.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29126.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	4.71486752466187	4.08731559143806	4.26242890274059	4.71728762003105	4.08434983344335	3.82982260238119	4.10118338788191	4.46848106257565	-0.822949328255083	0.0699219096477966	0.283004304313503
Merged-chr9-107295696-2	chr9	107295584	107295784	+	645.0	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_009895)	promoter-TSS (NM_009895)	-975.0	NM_009895	12700.0	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	3.50179067234395	3.31777189684995	3.07346881709833	2.96601482387385	3.95212594262799	3.51007465359722	3.37970118299323	3.27255934011699	1.15737234448904	0.0466858193362605	0.222148923341123
Merged-chr7-28374284-4	chr7	28374211	28374411	+	959.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1649.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	4.83178219059825	4.3959848990801	4.36156559515334	3.91851629728251	4.51315740038108	4.39972046065323	4.20446730832376	4.35879891377598	-0.0652558578329761	0.881264189174322	0.955381813382261
Merged-chr4-88722440-5	chr4	88722281	88722481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172871, exon 1 of 1)	5' UTR (NM_172871, exon 1 of 1)	127.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	7.38771635781809	7.46667203712591	7.84036736824006	7.40240590990139	7.29861242009742	7.47239525718783	7.3422306862828	7.59624414648736	-0.137245534721691	0.482386304288314	0.75723418393445
Merged-chr7-128320639-4	chr7	128320540	128320740	+	791.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	-22509.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	3.79173937631052	4.07989981411664	3.68197547201593	3.63472196193722	4.00725974615327	3.96498443432819	3.97047386136004	3.73623856279898	0.351904450095963	0.441181873533386	0.728396857622944
Merged-chr6-70806107-4	chr6	70806057	70806257	+	883.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13982.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	4.23136283790008	4.32587824121723	3.85222513014432	4.03246081182727	4.31551571332545	4.76753913231153	4.42799756961932	4.52334058944681	0.936126405755491	0.0208198202137674	0.131561570660613
Merged-chr5-117509754-4	chr5	117509657	117509857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 3 of 19)	intron (NM_001312914, intron 3 of 19)	95755.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	5.23165529530914	5.07619283022944	4.59898081616005	4.98856715175809	5.68965173213169	5.46792782711521	5.58066236837835	5.25987953922329	0.944678855812414	0.00272613127710627	0.029629454599656
Merged-chr6-22453304-4	chr6	22453200	22453400	+	870.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97219.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	4.31796512091126	4.28720438045337	4.66048282139374	4.75340005383298	4.19694916306538	3.97524134719941	3.95526715054882	4.27160304709784	-1.02369936387464	0.0150429935383758	0.105036809600555
Merged-chr2-6168038-2	chr2	6167938	6168138	+	787.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25213.0	NR_040333	320132.0	Mm.445891	NR_040333	ENSMUSG00000087125	A230108P19Rik	-	RIKEN cDNA A230108P19 gene	ncRNA	3.08490418954401	2.98309825239385	2.88518860816531	2.94654229763363	3.08632572498808	3.37338376173381	3.39652394386847	3.20192680308212	1.14303539730541	0.0419947489722137	0.207637137891998
Merged-chr1-36065032-4	chr1	36064937	36065137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3363.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	7.49906886884897	7.97579762619549	7.49122989968777	6.67689206668214	7.74248385290585	7.51307315926287	7.26741103426189	6.94533548951151	-0.111010512995964	0.703235616241315	0.880656761361176
Merged-chr18-66469519-3	chr18	66469420	66469620	+	879.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	10916.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	3.4998741146881	3.63647968534691	3.6065616037316	3.36221691354099	3.45542263271008	3.49870778229477	3.48677768938675	3.60446783764196	-0.0358891962962719	0.942121564988532	0.979062797089676
Merged-chr5-139338050-4	chr5	139337933	139338133	+	925.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_197980, exon 3 of 3)	3' UTR (NM_197980, exon 3 of 3)	7133.0	NM_197980	68033.0	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	4.58128524796787	4.56150834615679	4.25505787842386	4.35071201432759	4.14629367330164	4.38241305214559	4.28182339306017	4.20510281494067	-0.455130363536893	0.24113634552517	0.551696954072066
Merged-chr10-70224803-4	chr10	70224727	70224927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20163.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	5.69527258401683	5.80253235027396	6.29366239560017	6.22349266793875	5.78301205885596	6.07333716043766	5.89051573457419	5.96135041442854	-0.180950502065977	0.502264220796931	0.769575778516236
Merged-chr17-49429281-4	chr17	49429175	49429375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020042, intron 1 of 10)	intron (NM_020042, intron 1 of 10)	911.0	NM_020042	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	7.22844842301557	7.46902878953943	7.13992151799417	7.01759161414958	7.44024777871791	7.07470056504688	7.33610964981618	6.83418213430102	-0.0260530244792014	0.906025199827722	0.965129717128666
Merged-chr7-44485313-2	chr7	44485213	44485413	+	851.900024	f1_balb.idr|f1_c57bl6.idr	TTS (NR_131001)	TTS (NR_131001)	796.0	NR_131001	71368.0	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	Gm45123	RIKEN cDNA 5430431A17 gene	ncRNA	2.97473457297657	2.947694745072	2.90582449700152	3.06121990001462	3.38647400741327	3.3333856320346	3.26211869662628	3.2736816041713	1.28870839262515	0.0215129560229258	0.134345560340045
Merged-chr2-156415867-4	chr2	156415764	156415964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-5045.0	NM_001291122	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	6.21860152760816	6.31799962641584	6.03040838786366	6.103316970739	6.41296360402866	6.39551462790031	6.55548641977829	6.02611234435453	0.293396549916098	0.216708619719523	0.523399370330695
Merged-chr15-100457565-4	chr15	100457457	100457657	+	831.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11454.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	4.08581268229775	4.20880431057472	4.13567078040218	4.12959916791222	4.55364834473902	4.15917405928792	4.16504048162101	4.39427037695499	0.48979940589721	0.217719524111046	0.524670033822185
Merged-chr13-110394975-4	chr13	110394819	110395019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152804)	promoter-TSS (NM_152804)	-125.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	8.26324875779524	8.26466415933121	8.05245110778967	8.34929247791353	8.01751153700061	7.95814905065422	8.0401382585081	7.91484327655672	-0.330501330530921	0.0388245308155126	0.197941898662987
Merged-chr14-57772621-4	chr14	57772504	57772704	+	953.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3d|LINE|L1	-25585.0	NM_009119	20220.0	Mm.30173	NM_009119	ENSMUSG00000021963	Sap18	C530046K05Rik|D11Ertd539e|EMegR4|Sap18a|Sinbp1	Sin3-associated polypeptide 18	protein-coding	4.99663156756778	4.80061786093957	4.74981378867986	4.70138434206088	5.01747301314924	5.06892783696925	4.72760566437118	4.62405994025398	0.142350515347594	0.67607044903946	0.867026928482569
Merged-chr1-59584858-4	chr1	59584763	59584963	+	685.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013771, intron 12 of 19)	intron (NM_001013771, intron 12 of 19)	60569.0	NM_001357842	381260.0	Mm.486706	NM_001013771	ENSMUSG00000047361	Gm973	AW554518	predicted gene 973	protein-coding	3.89731282027649	3.86945761013774	4.03598748135367	3.83239312487495	3.89351500059513	3.68425349137492	4.01786292118074	3.68506104456523	-0.207582601253501	0.644139768230174	0.850082962136934
Merged-chr10-117150126-4	chr10	117150072	117150272	+	948.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1698.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	4.68373491549968	4.37681143971658	4.41250478115598	4.67497092501726	4.28084195856034	4.54216968548142	4.15834531576847	4.53336205711999	-0.388300776633936	0.312604383709428	0.62451046865229
Merged-chr17-47441534-4	chr17	47441434	47441634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145489, intron 1 of 4)	MER5A1|DNA|hAT-Charlie	-4159.0	NM_029296	75462.0	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	6.29272564051976	6.75278220013427	6.23641675572857	5.75724145416402	6.58453419769361	6.61068971834123	6.01571842897288	6.19218436128091	0.115460410063684	0.699457372459988	0.8787848398053
Merged-chr9-70851975-4	chr9	70851863	70852063	+	896.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	82845.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	4.28041959474537	4.29363082533386	4.23546482691745	4.60539305126405	4.33866226996171	4.45267076807847	4.01920734007923	4.27843822277025	-0.232701308231615	0.566126136494864	0.807783748011785
Merged-chr8-71559102-4	chr8	71559000	71559200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001100462)	promoter-TSS (NM_001100462)	-229.0	NM_001100462	434325.0	Mm.33613	NM_001100462	ENSMUSG00000043664	Tmem221	-	transmembrane protein 221	protein-coding	7.4906536466782	7.30605889566745	7.39713073119735	7.1485508662839	7.6187652223428	7.55433319273122	7.50834998789608	7.11797913445251	0.181834934249796	0.360541929661589	0.665897913449608
Merged-chr6-135977063-4	chr6	135976926	135977126	+	913.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008171, intron 4 of 14)	intron (NM_008171, intron 4 of 14)	196485.0	NM_008171	14812.0	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	3.86009642873874	4.05674822538042	4.11663828390651	4.0116424455879	5.1657746173735	4.90151497507803	5.16378678298651	5.33409582693196	2.45948707297023	6.41189912685276e-11	5.05978456707597e-09
Merged-chr7-16891763-4	chr7	16891658	16891858	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010320)	promoter-TSS (NM_010320)	-28.0	NM_010320	14709.0	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	5.33872919762266	5.1205219403196	5.3682561111944	5.28773189135594	5.45899121914257	4.94808510457268	5.47441967545866	5.18246087019322	0.0268294040491099	0.929931873699715	0.974727857709636
Merged-chr17-51785101-4	chr17	51784990	51785190	+	957.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357637, intron 6 of 10)	intron (NM_001357637, intron 6 of 10)	26964.0	NM_001163630	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	4.39607399473969	4.66667001755672	4.34976774090746	4.92466665456261	4.78024118473466	4.57223687867669	4.62573362551187	4.34716331973308	-0.0641875118707432	0.870408570058483	0.951350699571469
Merged-chr13-111494473-4	chr13	111494355	111494555	+	928.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-4328.0	NM_001361924	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	4.70355999425964	4.59434165649277	4.21070189081577	4.16653164859831	4.95443624402201	4.94804732586464	4.5657224958472	4.77364618202413	0.859847960180838	0.0230988118508102	0.14075424439079
Merged-chr11-101181054-2	chr11	101180954	101181154	+	880.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_016782, intron 8 of 23)	B3A|SINE|B2	4937.0	NM_016782	53321.0	Mm.474527	NM_016782	ENSMUSG00000017167	Cntnap1	AI841080|Caspr|NCP1|Nrxn4|p190|shm	contactin associated protein-like 1	protein-coding	3.70724349047742	3.42296904880167	3.30671927403706	3.39535578666364	3.76733381344674	3.7230683910856	3.59059366268524	3.80034966289863	0.835197059553192	0.0848770931934534	0.317004230056502
Merged-chr11-76440060-3	chr11	76439983	76440183	+	849.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 15 of 21)	intron (NM_001346670, intron 15 of 21)	28382.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	4.05159792709423	3.96014143779734	4.00761232206204	3.9109484313602	3.71817010396556	3.98480565666187	3.50523996083929	3.95895523621823	-0.507717648769515	0.268527229398936	0.580146289728247
Merged-chr13-8677394-1	chr13	8677294	8677494	+	1000.0	f0_balb.idr	intron (NR_110345, intron 4 of 10)	intron (NR_110345, intron 4 of 10)	193650.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	3.16452119281398	3.1123122776518	3.83097408519517	3.43894426262491	2.85286158437037	3.14633300877239	3.09042971303742	3.1633126510748	-1.35836536219425	0.0293214652047337	0.164738540674697
Merged-chr8-110970360-4	chr8	110970236	110970436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009179, exon 7 of 7)	3' UTR (NM_009179, exon 7 of 7)	27487.0	NM_007916	13680.0	Mm.287901	NM_007916	ENSMUSG00000015023	Ddx19a	DBP5|Ddx19|Eif4a-rs1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a	protein-coding	7.48662071381753	7.82684894447843	7.80539300802799	7.82721330688061	7.7537967604779	7.77740435921143	7.98222931488026	7.52118191335448	0.0260024520756995	0.888743828818238	0.958323567154768
Merged-chr3-8929962-4	chr3	8929856	8930056	+	916.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001025261, exon 8 of 8)	3' UTR (NM_001025261, exon 8 of 8)	-6099.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	4.67374819120837	4.69251918550359	5.00699944135604	4.60772725465407	4.48362803886336	4.40545523192306	4.57474677576621	4.59300545937082	-0.499995093551893	0.164610194774807	0.45485234168206
Merged-chr2-32881880-4	chr2	32881718	32881918	+	929.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 1 of 13)	intron (NM_146119, intron 1 of 13)	5684.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	4.09897499922162	3.96460223905132	4.05664812661496	4.17310964325461	3.75215275729516	3.571625053938	3.5744328904011	3.96361299772009	-1.01122461136934	0.0287734696528166	0.162971814786173
Merged-chr6-87518804-4	chr6	87518727	87518927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	14432.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	6.33684854249424	6.61078968875527	6.42440845790653	6.71331684927795	6.23049713760509	6.16825063359134	5.9593342985397	5.75432195262593	-0.742498467345537	0.00250279866538596	0.0277833291022313
Merged-chr17-55751327-4	chr17	55751213	55751413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139138, intron 1 of 16)	intron (NM_139138, intron 1 of 16)	1329.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	4.8130938940896	5.18098555507765	4.98646803985604	4.80672824184835	4.61570229063085	4.79157537523339	4.99349883525169	4.32407202378823	-0.515689629215482	0.157876325690982	0.444699766708372
Merged-chr3-95217290-4	chr3	95217167	95217367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_108026)	promoter-TSS (NR_108026)	-190.0	NR_108026	100504029.0	Mm.478537	NR_108026	ENSMUSG00000097167	Gm16740	-	predicted gene, 16740	ncRNA	6.74536232754588	7.01466387255571	6.77628022777377	6.93236329705723	7.05109092864975	7.02435089234386	6.9687519250051	6.8971417228439	0.152500859803878	0.431404855990977	0.721684792699752
Merged-chr10-21947121-4	chr10	21947025	21947225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 2 of 13)	intron (NM_001161845, intron 2 of 13)	-31547.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	7.97812126875814	8.50744983563937	8.09029454648861	7.56597510629844	8.01025564330051	8.07255585646048	7.87835437164063	7.38429561597692	-0.273330094631051	0.262628597915742	0.574445092878026
Merged-chr11-76593855-4	chr11	76593774	76593974	+	894.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16135.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	3.99009030709033	3.84301712510885	4.1940545554325	4.21657084814293	4.30285511375153	4.32140548967405	4.38964530112905	4.72160894805253	0.877210125465442	0.0343691885007244	0.183265346310637
Merged-chr14-64876786-4	chr14	64876674	64876874	+	962.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 4 of 9)	Lx5c|LINE|L1	73083.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	4.76381557113242	4.97790527745946	4.65504701767914	4.40707236257284	4.64798092608803	4.4857050467107	4.47223545637867	4.35302327524043	-0.453438445614539	0.23483220690441	0.544694741783141
Merged-chr15-68258957-4	chr15	68258845	68259045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145888)	promoter-TSS (NM_001145888)	-89.0	NM_198644	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	7.66157485842552	7.52235501286845	7.23071284602627	7.53726498767293	7.73857102218851	7.69046004456387	7.95774607941146	7.61541347118539	0.338694256475674	0.0670286140286411	0.27614919939484
Merged-chr7-130547858-3	chr7	130547737	130547937	+	789.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162855)	promoter-TSS (NM_001162855)	-456.0	NM_001162855	67872.0	Mm.21714	NM_001162855	ENSMUSG00000040331	Nsmce4a	2410003A14Rik	NSE4 homolog A, SMC5-SMC6 complex component	protein-coding	3.91927042241968	3.675998883476	3.31580657799067	3.85949519071934	3.68329720481251	3.68557667784581	3.49730956569889	3.91740122943784	-0.044893531674077	0.930083850798938	0.974727857709636
Merged-chr5-99216166-5	chr5	99216111	99216311	+	880.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36716.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.79112443383834	3.55216339142077	3.6284546531941	3.63209544985988	4.1810398146624	4.05914606496276	3.72437407549466	3.68312981574418	0.829078364400398	0.0768863485661848	0.299715677956916
Merged-chr11-54182018-1	chr11	54181918	54182118	+	569.0	f0_balb.idr	intron (NR_045506, intron 2 of 2)	MER3|DNA|hAT-Charlie	31270.0	NR_045506	71056.0	Mm.56332	NR_045506	ENSMUSG00000086209	4933405E24Rik	-	RIKEN cDNA 4933405E24 gene	ncRNA	3.17403047383535	3.22093303826345	3.49894690051299	3.17252222726496	3.321170082388	3.51521606540457	3.163086452712	2.82508038501704	-0.147641553021636	0.808601884310793	0.926123355924103
Merged-chr2-170511322-5	chr2	170511281	170511481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040367, exon 1 of 3)	non-coding (NR_040367, exon 1 of 3)	151.0	NM_001199902	109054.0	Mm.28808	NM_001013369	ENSMUSG00000052033	Pfdn4	0610025M10Rik|1810063B06Rik|C-1|C1|Pfd4	prefoldin 4	protein-coding	5.38538514342608	5.2194033579201	5.72070500726805	5.08612660256647	5.42365861699881	5.88767300517632	5.23734180207346	5.52224549316305	0.311760363598009	0.331459828980136	0.642595786244724
Merged-chr3-121762189-2	chr3	121762089	121762289	+	944.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008991, intron 21 of 22)	MER20|DNA|hAT-Charlie	38652.0	NM_010171	14066.0	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	3.28864380741796	3.01172788438864	2.9590646477986	3.3089907801537	3.45337133928717	3.46066085236088	3.43905833558646	3.55033719888849	1.10919864081466	0.0472204715269757	0.223686007108918
Merged-chr6-17622132-4	chr6	17622042	17622242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14868.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	6.41633018022344	5.9219024341592	6.31182947170131	6.37500391969646	6.30003498143533	6.48732364073463	6.20421920309804	6.41287329875176	0.117504646266956	0.620391069363815	0.837195812179456
Merged-chr5-8347601-3	chr5	8347500	8347700	+	965.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	20560.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	3.77696361338308	3.64198158585181	4.19513549848688	4.27499736353938	4.08559376750182	3.65481725703376	3.81582321606662	3.8805659790497	-0.368303287793795	0.45554294648687	0.739033421948465
Merged-chr18-65583918-4	chr18	65583792	65583992	+	904.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361051, intron 1 of 8)	intron (NM_001361051, intron 1 of 8)	691.0	NM_001361051	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	4.45044537276273	4.14089150622663	4.84875456078014	5.06301352928737	4.17206542580796	3.93487306281034	4.55082480845484	4.44828681995238	-0.876362799002971	0.0558761602375289	0.247408000053491
Merged-chr15-73675627-4	chr15	73675513	73675713	+	894.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31892.0	NM_173365	239530.0	Mm.122997	NM_173365	ENSMUSG00000045281	Gpr20	A430106B11Rik	G protein-coupled receptor 20	protein-coding	4.13621725634418	4.12854995777615	4.38669424506052	4.49154358064976	4.09175167238459	3.7594097851582	4.02440445041912	4.22356676924217	-0.694050644204347	0.109609379067164	0.365582024863954
Merged-chr3-123103420-4	chr3	123103322	123103522	+	852.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080451, intron 4 of 4)	intron (NM_080451, intron 4 of 4)	-68435.0	NM_001355462	59006.0	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	4.14071293107077	4.24875381377909	4.23411112893839	4.18678169048506	4.31699498035681	4.11126919656939	4.34174810570228	4.31791006926337	0.188885424433454	0.624842727316763	0.839659374707287
Merged-chr15-96709220-4	chr15	96709128	96709328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9500.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	5.00362399503319	5.27201835306981	5.00445951553488	4.72779455285732	5.15782373155847	4.95555443051589	5.01418830245141	5.19344865017196	0.164478810955054	0.615112888280009	0.834297914878003
Merged-chr6-145193617-4	chr6	145193524	145193724	+	931.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177222, intron 7 of 15)	intron (NM_177222, intron 7 of 15)	17346.0	NM_177222	320662.0	Mm.207779	NM_177222	ENSMUSG00000043541	Casc1	A230084G12Rik|Las1	cancer susceptibility candidate 1	protein-coding	4.90398152629067	4.71445520391997	4.68972392515771	4.88130341666559	4.65594501515587	4.35444291225861	4.8809217882221	4.72510090155912	-0.285407824969078	0.417306254023828	0.711119029331147
Merged-chr4-80331288-4	chr4	80331185	80331385	+	888.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-502928.0	NM_031202	22178.0	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	3.82747055834022	3.88103529701407	3.88466781997843	3.7817696803411	4.35002882280356	4.00840599469792	4.47127596161272	4.45552399535802	1.2868422049123	0.00184935165108652	0.0220199065193522
Merged-chr6-129097608-4	chr6	129097515	129097715	+	794.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153506, intron 2 of 4)	intron (NM_153506, intron 2 of 4)	3288.0	NM_153506	232409.0	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	4.55996454825505	4.51836912835592	4.118653628969	4.1858529172018	4.27921345222403	4.69295286258068	3.9934625729851	4.59444750917529	0.138149489391857	0.745116118440236	0.899431814827356
Merged-chr5-86804692-4	chr5	86804584	86804784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177680, intron 1 of 16)	CpG	418.0	NM_001359907	231386.0	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	6.62263582811853	6.96003393853674	7.19576610928665	6.93446285939089	6.90093491209939	7.07241704543364	7.28122188160407	6.99465406999208	0.168861971767925	0.428465664523208	0.719507959429316
Merged-chr2-152332575-4	chr2	152332460	152332660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083921)	promoter-TSS (NM_001083921)	79.0	NM_019705	24105.0	Mm.182145	NM_019705	ENSMUSG00000027466	Rbck1	AL033326|HOIL-1|HOIL-1L|UIP28|Ubce7ip3	RanBP-type and C3HC4-type zinc finger containing 1	protein-coding	7.48757267693612	7.50350130412901	7.76071434549385	7.45804901552675	7.66670908592885	7.60779043548563	7.59485338614385	7.70094356013204	0.122405451359051	0.479172307715858	0.754947224111449
Merged-chr3-27650298-4	chr3	27650213	27650413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	60139.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	6.81951486005449	6.9935773637283	7.1844056863692	7.1184798715206	6.508085592395	6.66279674326493	6.85421388703075	6.92359183765482	-0.421163304105179	0.0466814209049387	0.222148923341123
Merged-chr15-25302514-2	chr15	25302414	25302614	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111250.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	3.82875905654606	3.73283342473058	3.82929340421424	3.69340444242165	4.14765688165877	4.05332852576746	4.09417095269186	3.92868858830666	0.83072189937676	0.0501713423559443	0.232299874946579
Merged-chr4-8823339-3	chr4	8823240	8823440	+	886.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 7 of 36)	intron (NM_001355382, intron 7 of 36)	72016.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	3.44631583616452	3.1211013414915	3.49519855360708	3.47530866073494	3.02850490956803	2.85227127133145	3.16133188955166	3.28762151287004	-1.17036287068785	0.051383174968245	0.235414714924351
Merged-chr5-122627372-4	chr5	122627224	122627424	+	687.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12780.0	NM_009879	12589.0	Mm.10125	NM_009879	ENSMUSG00000029469	Ift81	AW060663|Cdv-1|Cdv-1r|Cdv1	intraflagellar transport 81	protein-coding	3.05147783748824	2.95738267844683	3.11502024935358	2.95746519321536	3.23751218866014	3.34644633054792	3.16331190207713	3.43834685530135	1.09605541590516	0.0448405421091816	0.216372106758148
Merged-chr8-80739671-4	chr8	80739566	80739766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053124)	promoter-TSS (NM_053124)	-207.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	8.43046190348836	8.45198754059606	8.57954954147405	7.66791054053195	8.25156657972244	8.61986734551691	8.48968527941242	8.20559056846342	0.100942521749257	0.655453236592508	0.856085154466486
Merged-chr17-57358584-4	chr17	57358495	57358695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355723)	promoter-TSS (NM_001355723)	-91.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	7.79918984585636	7.92016349597677	7.64150913546115	7.36393530158857	7.83757267984348	7.89288132329141	7.48902736980957	7.13193307361024	-0.0875160297066752	0.703981835956296	0.880970535725543
Merged-chr10-52418090-4	chr10	52417986	52418186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030250, exon 1 of 5)	exon (NM_030250, exon 1 of 5)	539.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	5.88524681067531	5.75818004290466	6.41227893362974	5.77739233405518	6.12534737352873	5.85654888777754	6.21003693819816	6.45444677622711	0.317207276443133	0.256124214354137	0.567721270973876
Merged-chr11-101673370-4	chr11	101673268	101673468	+	883.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7827.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	4.35530442585479	3.85838504363159	4.1973592487483	4.06703986503587	3.97507982482443	3.80451546555318	4.219326333902	3.85835067613733	-0.397982832251871	0.370927793455732	0.675068605253279
Merged-chr16-22399478-3	chr16	22399369	22399569	+	772.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358428, intron 8 of 12)	intron (NM_001358428, intron 8 of 12)	38899.0	NM_001358428	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	3.66685636960541	3.62100402424958	4.11727771748477	3.33673914287623	3.87381395609457	3.89252778069317	3.48196580483943	3.43020377743713	-0.0600330673592464	0.911909904539619	0.967058605013842
Merged-chr14-73385333-4	chr14	73385245	73385445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008410)	promoter-TSS (NM_008410)	-56.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	6.73475999654317	6.70399725651688	6.9124635047717	6.78825644315866	6.79098319396457	6.74138173179896	6.77224079939677	6.52582765503439	-0.100221396037915	0.61903804678073	0.836259425541954
Merged-chr9-95575109-4	chr9	95575013	95575213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15296.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	5.07161723964984	5.61549711727948	5.77377646663561	5.798410878647	5.43734700797063	5.09655800153622	5.18842753378477	5.24341195700202	-0.616369627377143	0.0522488363801665	0.238024560530398
Merged-chr9-92303572-3	chr9	92303469	92303669	+	852.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5808.0	NM_001033184	78459.0	Mm.179195	NM_001033184	ENSMUSG00000074139	1700057G04Rik	-	RIKEN cDNA 1700057G04 gene	protein-coding	4.71828871136595	4.80740485613447	5.20704406686801	5.08822158011819	3.14931354230247	3.48636805237702	3.42614910896118	3.51572545526252	-6.99150784645019	2.49386069711618e-11	2.10820083800514e-09
Merged-chr7-83892019-4	chr7	83891922	83892122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023403)	promoter-TSS (NM_023403)	22.0	NM_023403	67943.0	Mm.117365	NM_023403	ENSMUSG00000038503	Mesd	2210015O11Rik|AW537813|Mesdc2|mKIAA0081|mesd|msd	mesoderm development LRP chaperone	protein-coding	8.58057497528474	8.806716631857	8.73817595759063	8.75984021156461	8.73533271907709	8.78304462598497	8.92399887308554	8.62759855317733	0.0565878504367342	0.708537847317752	0.882900028609472
Merged-chr9-21798052-2	chr9	21797952	21798152	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145611, intron 1 of 11)	intron (NM_145611, intron 1 of 11)	494.0	NM_145611	235041.0	Mm.257371	NM_145611	ENSMUSG00000032194	Kank2	AI504612|Ankrd25|BC010245	KN motif and ankyrin repeat domains 2	protein-coding	3.41193940978685	3.47070191804317	3.56866966589094	3.27010196704525	3.51374820480567	3.2115007617499	3.2237713607247	3.51664064414418	-0.15977967242921	0.764085377229067	0.907505974733652
Merged-chr5-43842880-4	chr5	43842777	43842977	+	900.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009763, exon 9 of 9)	3' UTR (NM_009763, exon 9 of 9)	23984.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	4.62761893364307	4.52263041210265	4.73505917590484	4.27341646123907	4.51318451110529	4.6013265644143	4.17275572444904	4.42491410163704	-0.220517370213645	0.571076852057172	0.810348982482694
Merged-chr13-60660097-3	chr13	60659998	60660198	+	851.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	57887.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	3.33279917544113	4.07739084832757	3.70866519471281	3.85017679747219	3.16989607068826	3.17285929422688	2.97463378328806	3.331523410289	-2.20880269625562	0.000341171342243311	0.00563831784758222
Merged-chr11-54812947-4	chr11	54812853	54813053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6966.0	NR_040284	432562.0	Mm.406948	NR_040284	ENSMUSG00000086789	Lyrm7os	Gm12228	LYR motif containing 7, opposite strand	ncRNA	6.84808443388476	7.00768561550213	6.75033585955391	7.18702650916399	6.9297434171632	6.5373617517785	6.67160929636244	6.78885984711695	-0.316946385395864	0.145975619844815	0.425870917490536
Merged-chr18-32693947-4	chr18	32693848	32694048	+	899.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045381, intron 4 of 4)	intron (NR_045381, intron 4 of 4)	-121435.0	NM_021367	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	4.56549968777151	4.96627149112286	4.43276354469687	4.03738418860558	5.08448563919747	4.82266053182001	4.54510085176739	4.75885971636202	0.606814257539018	0.143008871940265	0.421099097995123
Merged-chr3-81037563-4	chr3	81037384	81037584	+	966.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019971, exon 1 of 6)	exon (NM_019971, exon 1 of 6)	1068.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	4.52873627592472	4.33684144839621	4.64572536404424	4.38322597675137	4.7119462788668	4.70131977265318	4.54811127012205	4.25708746683727	0.229534183550319	0.539131933333765	0.791983989773924
Merged-chr19-12469001-4	chr19	12468895	12469095	+	950.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172442, exon 9 of 9)	3' UTR (NM_172442, exon 9 of 9)	8216.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	4.96298602952507	5.2138182348813	5.45442323363243	5.1257855456238	4.6209746925658	4.22808303694717	4.55599952847309	4.48084464356061	-1.47205280878958	5.45802160678022e-05	0.00122053572085771
Merged-chr5-113634412-3	chr5	113634312	113634512	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	9191.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	5.907638374393	6.49081707732611	6.57220196447873	6.14069185717001	6.2228373073385	5.95804857392499	6.33182652175288	6.37715554484358	-0.0995997729278813	0.701627942043649	0.879767652498371
Merged-chr16-3744038-4	chr16	3743931	3744131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148924)	promoter-TSS (NM_148924)	-68.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	8.55149577037338	8.5898207458752	8.40803956911721	8.46846590383396	8.6250146745464	8.53165496101729	8.68465804860188	8.26860907558236	0.04211264032833	0.795118574138276	0.920762027490351
Merged-chr8-35540696-2	chr8	35540586	35540786	+	1000.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45153.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	3.26977208675813	3.2416294857798	3.27014338699082	2.88870424063886	4.8074193282477	4.79257329899628	4.41906413755979	4.79755373666834	4.90055867887277	5.114602445916e-17	1.1376633984308e-14
Merged-chr7-45866208-4	chr7	45866121	45866321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008172, exon 1 of 12)	exon (NM_008172, exon 1 of 12)	460.0	NM_008172	14814.0	Mm.322594	NM_008172	ENSMUSG00000002771	Grin2d	GluN2D|NMDAR2D|NR2D	glutamate receptor, ionotropic, NMDA2D (epsilon 4)	protein-coding	6.6568214689959	6.38481598366378	6.27177134077987	6.48034979603543	6.51272060018744	6.56034103218984	6.36956071187214	6.44980675597908	0.0274939303412579	0.899285085108121	0.962501700242255
Merged-chr10-80694807-4	chr10	80694719	80694919	+	974.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	7001.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	5.67758805033408	6.06716686800137	4.91370304397511	4.95050180199072	5.91891620006171	5.72348221141254	5.49015800892789	6.09685217909151	0.550553533810155	0.143094315038569	0.421263555717193
Merged-chr10-81601045-4	chr10	81600956	81601156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346695)	promoter-TSS (NM_001346695)	-156.0	NM_001346695	114606.0	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	7.26760820476566	7.24031386858244	7.20131353428827	7.39188094112873	7.46678409453901	7.61960172548068	7.64713495990853	7.51151488462839	0.36624853889049	0.0370314176193127	0.191834694485714
Merged-chr7-45461007-4	chr7	45460909	45461109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007527)	TTS (NM_007527)	-1123.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	6.25431734563499	6.62484944600766	7.11789230487002	6.71922592158694	6.60267914811689	6.41338985383028	6.37788533114936	6.65396001590297	-0.281099813942851	0.2594467177382	0.571250530584125
Merged-chr7-75639671-4	chr7	75639504	75639704	+	854.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	184070.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	3.38680788681363	3.50314551034776	3.74484502553136	3.1753752597721	3.37278958907065	3.67094655165098	3.1877459164342	3.49798170671907	-0.0640799074502852	0.907275457604329	0.96565361691694
Merged-chr3-104937918-4	chr3	104937842	104938042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	23767.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	5.44775522756588	5.48287953811101	5.26310506817088	5.84376955641171	5.75872925724693	5.47273763419506	5.30178372846774	5.50114679834209	-0.0347554146664768	0.908994867406603	0.966156082397695
Merged-chr7-129501573-4	chr7	129501477	129501677	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-90286.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	4.90215175459818	4.54675430642087	5.27269178533419	5.27654753414878	4.72431691471176	4.84587853796619	4.94846461351329	4.787607471754	-0.433679325030377	0.229737034242944	0.538813547740569
Merged-chr18-6531378-3	chr18	6531287	6531487	+	844.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-15279.0	NM_007935	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	4.72462762790957	4.43640563588511	5.05275040972666	5.39811466161288	3.56398711733654	3.68151524148476	3.94720540637238	3.76961142293219	-3.25977918926037	3.398514059498e-10	2.39034419210483e-08
Merged-chr17-8195823-4	chr17	8195702	8195902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001197046, exon 13 of 13)	3' UTR (NM_001197046, exon 13 of 13)	30284.0	NM_201230	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	6.42930551434881	6.25355424703783	6.90036671162377	7.02189329220854	6.52328972741289	5.89346781702812	6.66749745120636	6.68254382141035	-0.314081913805529	0.273912798865264	0.585631356194599
Merged-chr9-62828902-4	chr9	62828789	62828989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9898.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	8.66700940747166	8.83437515285287	8.43840304123643	8.51208951531211	8.65249239166701	8.93449566308467	8.70112930327999	8.50428035843511	0.10666028722289	0.53567980226812	0.789809240803911
Merged-chr9-61367805-3	chr9	61367713	61367913	+	952.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4553.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	3.64932370449172	4.67625877070129	3.71053379732709	3.35356877707807	4.06719091720495	4.10555803372502	3.69595723836887	4.024178754143	0.0505243580176057	0.930085297177269	0.974727857709636
Merged-chr7-25706994-4	chr7	25706898	25707098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12055.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	8.02576757370204	7.86187677587714	8.36191356076614	8.14277588911409	7.76270171323777	7.9804605172246	7.88546743806536	7.9537096142756	-0.278475655238204	0.119029326306166	0.381720183060508
Merged-chr8-120741219-4	chr8	120741103	120741303	+	948.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 2 of 8)	intron (NM_001301811, intron 2 of 8)	2564.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	5.18771419910169	5.26404097538971	5.52399367603345	5.24424987728508	4.72555814320365	5.36292386030649	5.16304157510052	5.21661198993454	-0.34036734503108	0.291819967535597	0.604222955379233
Merged-chr13-43164360-1	chr13	43164260	43164460	+	847.0	f0_balb.idr	intron (NM_001252639, intron 4 of 7)	intron (NM_001252639, intron 4 of 7)	7141.0	NM_001252639	67046.0	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding	3.32493889085245	3.42792018375799	3.32545185835513	3.44186821901896	2.70280936669945	2.80102799041287	2.68744994871689	2.84429693345934	-3.21873860485335	2.17734315571301e-05	0.000549188903190985
Merged-chr3-144628201-3	chr3	144628099	144628299	+	731.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR73|LTR|ERV1	57772.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	3.52494051163169	3.5963817598416	3.41886366495479	3.46356100563774	3.18436386336426	3.21756673526313	3.22968560610333	3.62151844497973	-0.628454485466573	0.241447434811574	0.552034276752374
Merged-chr1-157248252-4	chr1	157248159	157248359	+	888.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177644, intron 3 of 17)	intron (NM_177644, intron 3 of 17)	-139579.0	NM_001305063	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	4.60726132105727	4.50713768794666	4.85166528644523	5.10360463251708	4.46653709638729	3.83384726938563	4.33477686124359	4.39715706563158	-1.15187763685743	0.00769314737193104	0.0653605319630794
Merged-chr3-87227055-4	chr3	87226963	87227163	+	644.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	36461.0	NM_030707	80891.0	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	3.14659132885887	3.45036293349861	3.33415390314295	3.1718333772719	3.4407846086505	3.38755825187771	3.58044927856358	3.44364247963303	0.662575325738788	0.199566742684059	0.501474545095065
Merged-chr5-95914284-4	chr5	95914171	95914371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42668.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	7.15559235507664	7.18217386190474	7.03209141882518	6.89387209600389	6.7547515733713	7.00192689594944	6.73302218176786	6.42754942450552	-0.449058589379293	0.0366512276472525	0.190575045947922
Merged-chr15-41447378-4	chr15	41447267	41447467	+	932.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358978)	promoter-TSS (NM_001358978)	-115.0	NR_152565	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	6.19933715723418	5.89616437377512	6.02709514071736	6.52225081837578	4.76678038773428	5.01581290066049	4.60253763230304	4.51011542771015	-2.63922668153785	4.50520175180602e-15	7.40590659334413e-13
Merged-chr6-33401402-4	chr6	33401297	33401497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347089, intron 7 of 9)	Lx8b|LINE|L1	152269.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	6.32227129534268	6.40069355113874	6.21136961534533	6.54813268987047	6.07723269393452	6.15353800302891	6.01379912796691	6.14698767494267	-0.446326696393855	0.05130173026607	0.235117240268405
Merged-chr4-149309464-4	chr4	149309365	149309565	+	851.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGA)n|Simple_repeat|Simple_repeat	-1732.0	NM_001290995	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	4.52722423913332	3.93625280116398	4.19031555630518	4.56036871748059	4.51716278522873	4.26683521790711	4.35047754239004	4.18782225321505	0.00809599473148122	0.984746788348274	0.994414454407789
Merged-chr6-48818020-4	chr6	48817909	48818109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22979.0	NM_023056	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	5.98536010099125	6.09372694770949	6.3287893406484	6.46711238246653	5.98366941955306	6.06865014829415	6.47571138603343	6.19443171591578	-0.0862457392397948	0.736300807016728	0.895944255036988
Merged-chr6-124662184-2	chr6	124662084	124662284	+	578.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145130)	promoter-TSS (NM_145130)	-920.0	NR_149320	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	3.51698843010923	3.60072446917859	3.40645779659461	3.23200859236	3.63693215051138	3.39803311916103	3.60413362098419	3.34552682759365	0.237614761433028	0.645808671474662	0.850980720782851
Merged-chr12-79534353-3	chr12	79534253	79534453	+	623.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	237002.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	3.17765295363715	2.90668610374801	2.9111049002371	2.78734926113333	2.60971856680763	2.89484273266405	2.7769424305829	2.49516451025268	-1.19493188253877	0.0825354974173124	0.311954852226036
Merged-chr16-17928805-4	chr16	17928702	17928902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153150)	promoter-TSS (NM_153150)	-583.0	NM_153150	13358.0	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	6.73783703162352	6.91083144188825	6.56730913497244	6.47345684494679	7.0255969246582	6.72781820172069	6.74755735317254	6.85903814307362	0.25285915249312	0.243489452467812	0.554584996870705
Merged-chr12-75449094-4	chr12	75449017	75449217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32336.0	NM_175644	217674.0	Mm.252250	NM_175644	ENSMUSG00000048982	Gphb5	OGH|Zlut1	glycoprotein hormone beta 5	protein-coding	5.77620813004553	5.63059032876951	5.60184206234565	6.12722520949614	5.55352064858359	5.54467953121263	5.57366564593384	5.54303499847935	-0.451924117498307	0.107340511143707	0.361382260156614
Merged-chr3-133094518-4	chr3	133094397	133094597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027927, intron 1 of 6)	intron (NM_027927, intron 1 of 6)	-2458.0	NM_001356309	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	5.838635413532	5.89635915447907	5.34620575990667	5.95872199436631	5.30944550371639	5.28423622581445	5.46821988677551	5.31041793483144	-0.772307051668872	0.00768837097362316	0.0653560688338556
Merged-chr3-69657806-4	chr3	69657700	69657900	+	964.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58840.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	5.69201525953275	5.42450449577208	5.59718065548723	5.55481928052992	5.61608715438563	5.33242437639732	4.94179312282983	5.21946062307715	-0.443215947400669	0.147916951613192	0.429387467327707
Merged-chr1-95397366-4	chr1	95397259	95397459	+	694.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	83731.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	3.85634049395197	4.19202183014977	3.91041279308428	4.01040291485519	3.97140747016121	3.97792573777435	4.13065780899128	4.23073188674427	0.202861928947456	0.631808323846128	0.843565602967326
Merged-chr4-47280341-4	chr4	47280241	47280441	+	859.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 17 of 39)	intron (NM_009928, intron 17 of 39)	72329.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	4.35314753722375	3.97466270841152	3.83775120351129	3.82013281618921	4.15022465841874	4.3596328774218	4.17025681528296	4.09557171279654	0.500396818959256	0.244570874576651	0.5557618752544
Merged-chr13-111979577-3	chr13	111979485	111979685	+	968.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111649.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	4.39081347399941	3.91180041857	4.03682210059215	4.17112807767217	3.80116615624512	3.59446543834323	3.59638758552317	3.93991832195811	-1.11369781517658	0.0180272612088561	0.119297361991927
Merged-chr4-93467574-1	chr4	93467474	93467674	+	762.0	f0_balb.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-132063.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	3.25584044383031	3.59682859543759	3.38359388178671	3.90473164484099	3.14308418652561	3.61600701932753	3.59155553875637	3.65459119605124	-0.182582707149344	0.750394481144819	0.901747852063193
Merged-chr18-61938451-1	chr18	61938351	61938551	+	638.5	f0_balb.idr	Intergenic	Intergenic	-14624.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	3.09850213756826	3.44350786570327	3.16397967660827	3.24152043170126	3.30958930114466	3.39792167353128	3.32909208714892	3.44643302395852	0.444195678995432	0.402052731384885	0.699617217078065
Merged-chr6-122854787-4	chr6	122854684	122854884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009779, intron 1 of 1)	intron (NM_009779, intron 1 of 1)	1373.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	6.42068752116127	6.64053930058059	6.57411909164198	6.41464917099468	6.74170902004503	6.78135301876303	6.49204207777975	6.52071286574957	0.192160725791716	0.36791165589688	0.672413095509279
Merged-chr14-32184286-4	chr14	32184219	32184419	+	970.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016897, intron 6 of 6)	intron (NM_016897, intron 6 of 6)	17572.0	NM_016897	53600.0	Mm.303703	NM_016897	ENSMUSG00000013701	Timm23	Tim23	translocase of inner mitochondrial membrane 23	protein-coding	4.94628731209842	5.21725471005243	5.13987672738373	4.86862583554288	4.95169680762324	4.6763680413999	4.9232639181419	4.71674021429923	-0.421223917683425	0.206535546562573	0.510555465287703
Merged-chr10-87842304-4	chr10	87842214	87842414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15951.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	5.40544877151834	5.63850198858484	5.67670627043917	5.74345211877351	5.81422795102397	5.3554704299571	5.49385087319683	5.24258047409206	-0.20239745991625	0.490374239501359	0.76218992069439
Merged-chr13-30786291-3	chr13	30786190	30786390	+	954.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37057.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	4.51464822827788	4.44481126733164	4.12475801196832	4.80083208805198	4.14180535127767	3.90368310581266	3.83015855515886	4.58486159347059	-0.844215536893417	0.0703801863747388	0.284199880068505
Merged-chr6-125219159-4	chr6	125219060	125219260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080557, intron 3 of 3)	intron (NM_001080557, intron 3 of 3)	3579.0	NM_009496	22317.0	Mm.32321	NM_009496	ENSMUSG00000030337	Vamp1	Syb-1|Syb1|VAMP-1|lew	vesicle-associated membrane protein 1	protein-coding	5.85999175277674	5.41841651246417	5.30505738797723	5.39308652178635	5.37775266979902	5.27861271955019	5.56022893139493	5.47877727547478	-0.133041081388798	0.650489965613469	0.853294802585927
Merged-chr14-26814084-4	chr14	26813966	26814166	+	963.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80538.0	NM_001170748	142687.0	Mm.138259	NM_080856	ENSMUSG00000021898	Asb14	Asb-14	ankyrin repeat and SOCS box-containing 14	protein-coding	4.49182685524176	4.5637150077087	5.03423174035649	5.16404539090892	5.46257415212509	4.728262185935	5.59379501278609	5.22042168076482	0.818894258452871	0.0361927650771144	0.18911900236169
Merged-chr1-147010850-4	chr1	147010744	147010944	+	927.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	513157.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	4.87489672905927	5.79432315981732	5.34767082599179	4.38439512687457	5.46599590500933	5.13456877640245	5.52646757570137	4.78875678698295	0.0959529805569515	0.824819543385685	0.932805260309978
Merged-chr3-88592154-4	chr3	88592059	88592259	+	793.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	12551.0	NM_025448	66256.0	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|SSR-beta|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	3.47174858031805	3.68015703015526	3.64108264136365	3.51301241234082	3.9092865694666	3.58713548272963	3.62652351601028	3.69068361714234	0.443611676067117	0.350885252115507	0.658345714219092
Merged-chr4-115731795-4	chr4	115731706	115731906	+	939.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6267.0	NM_172698	230648.0	Mm.283565	NM_172698	ENSMUSG00000034210	Efcab14	4732418C07Rik	EF-hand calcium binding domain 14	protein-coding	4.70856858635954	4.89600420912068	5.07147340313554	4.58771429429731	5.32427644328465	5.27390374369369	4.51064325096917	4.9352830470364	0.467940402360744	0.208910946506474	0.513256670626271
Merged-chr6-91515923-4	chr6	91515831	91516031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026309)	promoter-TSS (NM_026309)	-43.0	NM_009531	22591.0	Mm.2806	NM_009531	ENSMUSG00000030094	Xpc	-	xeroderma pigmentosum, complementation group C	protein-coding	8.60652393774795	8.56336204232966	8.17918125116705	8.26543661418587	8.32616196401374	8.53677115678497	8.45275790988119	8.16753882062594	-0.0473172147280205	0.791354321294465	0.919050824109746
Merged-chr11-121744048-10	chr11	121743966	121744166	+	961.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41639.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	4.31562960395828	4.33523936707383	3.9942698454438	4.16579867223028	4.07159375850691	4.16919351086198	4.16963986794131	4.09235616040016	-0.216487414660031	0.592130140524189	0.821965238571176
Merged-chr17-50237532-4	chr17	50237433	50237633	+	830.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1675.0	NR_131975	446210.0	Mm.378184	NM_001004437	ENSMUSG00000067103	AY702103	STDP2	cDNA sequence AY702103	ncRNA	3.9964047964596	4.08739644995277	3.99697569708995	4.15035915828743	4.50365710849365	3.7732136061943	4.20757822695267	3.99466672590937	0.252297539692771	0.574013480826534	0.812038269934451
Merged-chr5-135667007-4	chr5	135666897	135667097	+	967.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-22148.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	4.9588265311184	4.95724251099718	5.1994601474279	4.76580153035914	4.55572537551884	4.66510226178847	4.75994304063949	4.74086416717109	-0.598289678081106	0.0812712542800595	0.309397582949155
Merged-chr10-86886611-4	chr10	86886536	86886736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 42 of 68)	intron (NM_138673, intron 42 of 68)	107631.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	6.72410784255091	6.98113627003435	6.89795969635776	7.3144657844086	7.10742201647548	6.94691980680804	6.84966710473055	7.20299249087321	0.0286439948950065	0.897141677446519	0.961552264820071
Merged-chr12-33110964-4	chr12	33110843	33111043	+	948.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015602)	TTS (NR_015602)	-18068.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	5.04993353726247	4.97357792623251	5.05080469412913	4.94557123786238	4.59038906466078	4.48071026436492	4.64714345583897	4.34688594860009	-1.00648640028634	0.00354720915357773	0.0364233699282328
Merged-chr17-35837686-4	chr17	35837579	35837779	+	910.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011655, intron 1 of 3)	intron (NM_011655, intron 1 of 3)	622.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	4.41730458789057	5.17206189141048	4.71989459853092	4.09073568059749	5.06052746685118	4.59905798792359	4.90771230963769	4.7167465439967	0.366634795394484	0.390601660192015	0.69058015678842
Merged-chr2-154613440-4	chr2	154613347	154613547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199304)	promoter-TSS (NM_199304)	79.0	NM_199304	228807.0	Mm.103555	NM_199304	ENSMUSG00000059842	Zfp341	Znf341	zinc finger protein 341	protein-coding	6.84402258118195	7.15374301453591	6.56285852761791	6.65211229473304	6.96347710486396	7.24046120292861	7.37519655954233	6.93505498033354	0.439799659389541	0.0543229251029817	0.243369302990001
Merged-chr5-149635960-2	chr5	149635860	149636060	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347534, intron 1 of 16)	CpG	355.0	NM_013559	15505.0	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	4.55723293937526	4.28688836587133	4.28724079701709	4.53033958293501	4.65028925539668	4.60538678497356	4.53683973432527	5.05230384501283	0.648822722482271	0.0829538261035141	0.312910863142771
Merged-chr1-34459712-4	chr1	34459617	34459817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011206)	promoter-TSS (NM_011206)	-29.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	6.39367305826037	5.92535800845841	5.90294577456233	6.38711944402599	6.04453496106649	6.12673746689731	6.09194172235761	5.94594792480569	-0.205643165369819	0.4209539430519	0.713593577186672
Merged-chr12-76405480-5	chr12	76405294	76405494	+	881.783325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008301, exon 1 of 1)	exon (NM_008301, exon 1 of 1)	1024.0	NM_008301	15512.0	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	3.60849042313695	3.57308782378252	3.90713676666038	3.57506958241248	3.49060818794836	4.02972113560319	3.47956124390329	3.71407409619604	0.073151366652074	0.883833082295362	0.956344438085205
Merged-chr18-34651375-1	chr18	34651275	34651475	+	961.0	f1_balb.idr	intron (NM_178347, intron 2 of 15)	CpG	361.0	NM_178347	52563.0	Mm.196638	NM_178347	ENSMUSG00000024370	Cdc23	6030435O18|D18Ertd243e	CDC23 cell division cycle 23	protein-coding	3.76562693572564	3.38999045443582	3.28685401119336	3.41111170221724	3.26059895610354	3.52558983172851	3.33763951752076	3.80730938081524	0.0799474549011943	0.882535440552706	0.95575354370667
Merged-chr3-131564677-4	chr3	131564596	131564796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011863)	promoter-TSS (NM_011863)	-72.0	NM_001289479	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	9.78836738219831	9.75508019680023	10.1411705558879	9.83963288567157	9.70013691573957	9.79505008326499	10.020235565291	9.59950189984311	-0.123980506060394	0.447639016241925	0.733162234222692
Merged-chr1-59317597-4	chr1	59317500	59317700	+	977.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356389, intron 10 of 13)	intron (NM_001356389, intron 10 of 13)	60694.0	NM_001356389	271697.0	Mm.297713	NM_001033373	ENSMUSG00000026023	Cdk15	Als2cr7|Pftk2	cyclin-dependent kinase 15	protein-coding	4.38679803655592	4.75416531460284	4.04322522707312	3.57664392205852	4.9812818169271	4.47568725332825	4.60131438722068	3.92428223815085	0.633228464326376	0.227578787033278	0.536243064163191
Merged-chr16-20401796-4	chr16	20401683	20401883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176839, intron 6 of 6)	intron (NM_176839, intron 6 of 6)	24611.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	5.61517213981211	5.75757525018842	5.71930517289392	5.52138846394232	6.11808286411443	5.55947835402946	5.66547952932115	5.66477478037823	0.230889942427575	0.407153999300257	0.703537361109727
Merged-chr3-105910654-4	chr3	105910564	105910764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	6243.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	5.88538522208268	5.84743785374911	5.83902920585381	5.98249450474811	5.83104502019083	5.91536930370913	6.19823517284201	5.99337275994821	0.140992816296017	0.566349310135845	0.807861795964639
Merged-chr12-32764950-4	chr12	32764855	32765055	+	938.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55380.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	4.81821716745426	4.43457165828083	4.74738293809267	5.01102442512358	4.90088679476283	4.493969385588	4.39332959869222	4.74423581712171	-0.255346058586745	0.50344786374959	0.770381746164637
Merged-chr7-139219265-4	chr7	139219168	139219368	+	969.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001143755, intron 4 of 8)	intron (NM_001143755, intron 4 of 8)	-5961.0	NM_001162540	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	5.93351559578593	5.84745316894682	5.78203458430981	6.32867288197948	5.34973002618165	5.02261808935411	5.25061481961128	5.46421538624223	-1.2215933073261	3.91761616453037e-05	0.000915469471356228
Merged-chr9-57561118-7	chr9	57561010	57561210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022813, exon 1 of 9)	exon (NM_022813, exon 1 of 9)	166.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	5.557153357736	5.73695402774611	5.8575311921638	5.32682565969249	5.75632770986326	5.81543406745434	5.44350521640267	6.07621328955932	0.283807805669343	0.330758825773017	0.642078230007842
Merged-chr15-58604779-4	chr15	58604673	58604873	+	932.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	189305.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	4.78936604776034	4.60923090608179	4.71853263176991	4.75722437885738	4.63351810487191	4.30498498132382	4.4991303783554	4.82123198402627	-0.298956446620893	0.404752443605557	0.701827175038001
Merged-chr19-41369968-4	chr19	41369876	41370076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	15094.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	5.57186565341377	5.66123907718227	5.79426679772704	5.83396134726026	5.4747931656952	5.30817473460113	5.54483029783113	5.62155521235885	-0.398714477739982	0.137606390656097	0.412668433979792
Merged-chr11-105990435-4	chr11	105990351	105990551	+	969.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_207624)	TTS (NM_207624)	-4224.0	NM_001101453	217246.0	Mm.296699	NM_001101453	ENSMUSG00000101605	Ace3	EG217246	angiotensin I converting enzyme (peptidyl-dipeptidase A) 3	protein-coding	5.02865386257674	4.73651073761295	5.72665436211865	5.57970314424161	4.96760662379577	4.97640305655678	5.26127429474603	5.02608951732574	-0.50641132198529	0.16862828292008	0.460901334381705
Merged-chr6-17612447-3	chr6	17612345	17612545	+	962.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-24565.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	4.16014254621553	4.08439383423544	4.66477697199222	3.72429463606077	4.40543985682783	4.65081340244497	4.60682118478075	4.5530295612601	0.859690433897059	0.0500835857031701	0.232014288757953
Merged-chr5-135772714-4	chr5	135772605	135772805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029659, intron 1 of 8)	intron (NM_029659, intron 1 of 8)	5596.0	NM_001289554	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	6.00112853814671	5.73862343996534	6.29103584047713	6.07088970409815	6.0597697133754	5.88952351249972	5.76121994190529	6.21584639471727	-0.066225495975074	0.799783544900797	0.922665648246429
Merged-chr3-69157757-4	chr3	69157656	69157856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_126533)	TTS (NR_126533)	26523.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	5.56393394049363	5.68221862201461	7.04164199602756	6.8515254684034	6.04202456555728	5.18024633941156	6.26189474345348	6.15793275078401	-0.72212586822631	0.286739535486954	0.598423544139621
Merged-chr2-155381806-4	chr2	155381682	155381882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178111)	promoter-TSS (NM_178111)	-74.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	6.88166728369422	7.15110219584593	6.97631536262266	6.75554300720172	7.21644726811902	7.23988236237178	6.9020110649066	7.24720355574848	0.301474283123583	0.139428756942712	0.415174648520671
Merged-chr6-28487046-4	chr6	28486948	28487148	+	954.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	intron (NM_019776, intron 1 of 23)	6700.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	4.54884789337837	4.59798361208854	4.54957045072253	4.31874562336235	5.01250686113712	4.87950623021652	4.2513863562897	4.81134107154998	0.598521238464279	0.117129371007478	0.378565658581541
Merged-chr7-139950554-4	chr7	139950485	139950685	+	870.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6729.0	NM_009482	22286.0	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	3.93119765107764	3.82532824898842	4.28509228635372	3.83898450382616	4.08796850661667	3.70386991027381	3.96470203340677	4.28223859527539	0.146618460816339	0.748928425977763	0.901111877221528
Merged-chr16-50763343-4	chr16	50763254	50763454	+	911.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-20055.0	NR_131006	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	4.32124962657831	4.29039106509884	4.18414458836737	4.40284830857031	4.77026327070941	4.04028156376377	4.53757018265048	3.91454798092808	0.169618966105833	0.705138735184012	0.881587544161158
Merged-chr13-105054491-4	chr13	105054382	105054582	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029879, exon 1 of 6)	5' UTR (NM_029879, exon 1 of 6)	448.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	5.6988409177429	5.26745944443955	5.81051769496197	5.79184182899596	5.09680979939497	5.22926661230314	4.98540874028901	5.59963881912804	-0.735954647292319	0.0199530625204872	0.127834296772796
Merged-chr1-149943859-4	chr1	149943756	149943956	+	811.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	Lx8|LINE|L1	17434.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	4.43522486090679	3.88357745441319	4.03468079372018	4.60452183969637	4.22621075107384	4.21071430686359	4.25380008084608	4.18030431421524	-0.174059447089955	0.692825087022795	0.875149902126668
Merged-chr3-67430069-4	chr3	67429911	67430111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138591)	promoter-TSS (NM_138591)	-104.0	NM_138591	28030.0	Mm.122466	NM_138591	ENSMUSG00000027774	Gfm1	AW545374|D3Wsu133e|Gfm	G elongation factor, mitochondrial 1	protein-coding	5.9901812009718	6.0555204239844	6.34036681298566	6.12891145729963	6.02071242122972	5.92396807336495	6.12696813646871	6.13435536678628	-0.123477427398996	0.601543174243238	0.827133488921953
Merged-chr5-64961774-3	chr5	64961676	64961876	+	935.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1680.0	NM_011604	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	4.34103677226289	4.07930590980667	4.34170471599108	4.20815749999282	4.67620298393155	4.42461557245612	4.44982174796791	4.78966575437667	0.825258910329588	0.0276548676345428	0.158668855663318
Merged-chr2-38998108-4	chr2	38998037	38998237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029687)	promoter-TSS (NM_029687)	-172.0	NM_029687	76646.0	Mm.358777	NM_029687	ENSMUSG00000035295	Wdr38	1700123D08Rik	WD repeat domain 38	protein-coding	7.65657080337121	7.82363710083484	8.40894546184301	7.96828586920217	7.61193009961348	7.87850183078126	7.57614011466387	8.09601921125702	-0.245491304002866	0.268066417231406	0.579897015647937
Merged-chr14-20112311-2	chr14	20112211	20112411	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29139.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	2.75687151886829	2.8591027886413	2.89356457828388	2.74716631178788	3.11798388265987	3.18653576170335	2.94624802343737	3.12835917510142	1.23270943748593	0.034592817901877	0.18406834009402
Merged-chr6-39451134-1	chr6	39451034	39451234	+	544.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	30756.0	NR_152168	621427.0	Mm.389742	NR_152168	ENSMUSG00000068601	Gm10244	Anmkrn1	predicted gene 10244	ncRNA	3.23617979253976	3.22808524689698	2.95853134337175	2.73073107403685	2.86550938593481	2.86569211358631	2.75016902352677	3.01758256515972	-0.743338347715333	0.250391126945843	0.56151827425577
Merged-chr19-42744344-3	chr19	42744217	42744417	+	778.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029011, intron 4 of 15)	intron (NM_029011, intron 4 of 15)	8458.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	2.84715994197524	2.98241391786214	3.27732582640635	2.65550200903869	3.60911886610458	3.39681872174503	3.76499179577821	3.82263370630926	2.74456283369995	7.21213674781922e-06	0.000205917642026885
Merged-chr19-61031922-1	chr19	61031822	61032022	+	820.666687	f0_balb.idr	intron (NM_018869, intron 3 of 15)	(T)n|Simple_repeat|Simple_repeat	108918.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	3.23381857779161	3.10041657777534	3.3308525863762	3.34271568502122	2.70551083868565	2.70698897791833	2.59472515122123	2.59939200476199	-3.22785418946455	5.9739611968258e-05	0.00131606494592654
Merged-chr14-60284051-4	chr14	60283967	60284167	+	906.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144843, intron 4 of 13)	L1_Mur3|LINE|L1	18862.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	3.98390708281239	4.22836542620071	4.33188980025401	4.22049706005154	4.57500685493506	4.58637083563606	4.47400173626127	4.19155590335352	0.639742844529979	0.101354865415905	0.349327869353383
Merged-chr15-5446582-4	chr15	5446483	5446683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49735.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	7.43023505387179	7.46445077019793	6.95422615147956	7.40457234149849	7.21256616627963	6.97459643938287	6.94570080482246	7.21590290660072	-0.321195492782973	0.118844641412788	0.3813389862111
Merged-chr4-88725562-4	chr4	88725427	88725627	+	675.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3019.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	3.81835810981071	3.71668936136422	3.86918713868031	3.72568792332885	3.67670977928388	4.21956068647493	3.58286784339534	3.96171343128232	0.280545994593322	0.553112019499807	0.799974396526481
Merged-chr8-106394581-4	chr8	106394490	106394690	+	940.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20749.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	4.47629272120396	4.3785594914225	5.27623302241968	5.24602920545575	4.71751557410865	4.45688245915771	4.86308223319773	5.10790674070816	-0.223440988729431	0.601452826296957	0.827114010857096
Merged-chr16-94206084-4	chr16	94205995	94206195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 6 of 10)	intron (NM_001360045, intron 6 of 10)	84196.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	5.24135458016796	4.94423017988957	5.59299357705654	5.27183209475146	5.22248361738609	5.18116423853315	5.36197528204152	5.23863257257764	-0.0466159043247854	0.879739573353822	0.954974140832096
Merged-chr13-60619816-4	chr13	60619725	60619925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	17614.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	5.95256386286422	5.72876433395613	5.60125908977435	5.60132000974943	5.6303056909235	5.28453388833611	5.25647910699154	5.31034152980217	-0.568399779424758	0.0490165750123665	0.228888722220379
Merged-chr1-93011122-7	chr1	93010994	93011194	+	911.0476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159658, intron 2 of 2)	MER115|DNA|hAT-Tip100	4760.0	NM_177587	208760.0	Mm.235537	NM_177587	ENSMUSG00000045091	Aqp12	AB084104|mAQP12	aquaporin 12	protein-coding	4.32241352428082	4.06487363634821	4.32309757960985	4.02818637076754	4.15012634048838	4.07061154674829	4.34265508386828	4.09933259193463	-0.0210854279045857	0.958919408138669	0.985325253500605
Merged-chr6-140619927-4	chr6	140619805	140620005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2758.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	6.08094483817678	6.03438784102015	6.29906536757879	6.2780841626356	6.24704315852226	6.02497635327735	6.33691954548963	6.43165301306478	0.130078364735772	0.579168856089512	0.815251710931408
Merged-chr3-109480793-4	chr3	109480695	109480895	+	827.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-93212.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.28622546924745	4.03111090644939	4.05018688087682	4.25175924068987	4.26108077130361	4.53743172946113	4.3506953640419	4.24012139626806	0.447058212885798	0.25849189042162	0.570389684111402
Merged-chr7-79877961-3	chr7	79877860	79878060	+	749.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009682, exon 6 of 6)	3' UTR (NM_009682, exon 6 of 6)	-29750.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	3.56256111060695	3.58432290293781	3.16217643053702	3.18440930046489	3.48194772823313	3.40288991495646	3.39288874448655	3.34752159007938	0.0967534535506191	0.856929382342348	0.946159157665131
Merged-chr1-95449943-4	chr1	95449854	95450054	+	856.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136326.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	4.27250333240445	3.84163432811363	3.99109538022654	4.48375056219694	4.04364651560985	4.40032298892114	4.21126865866439	4.04023387014301	-0.0243023845977382	0.95674335726066	0.984724224578049
Merged-chr16-91861527-4	chr16	91861413	91861613	+	981.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 25 of 28)	intron (NM_001110275, intron 25 of 28)	70117.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	5.77636260834685	6.46945950262436	5.66093895593258	5.04706834000608	5.14853764386784	5.44360012430197	5.06068648469033	4.96305461487111	-1.16219824929145	0.0027469226812954	0.0297991435681958
Merged-chr15-36930627-3	chr15	36930535	36930735	+	665.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76767.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	3.04216800974752	3.02482445529295	3.20230610307457	2.70922591903486	2.7191068021254	2.83031200548221	2.91321017306628	2.85875160683417	-0.758486504515059	0.237316337757239	0.547497475293247
Merged-chr4-102511123-4	chr4	102511042	102511242	+	947.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-58918.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.79037059177685	4.36922341014384	4.33373300307695	4.83780577632202	4.86036535992526	4.41257159105367	5.01803351394997	4.5164475839044	0.246234375215156	0.535293378895799	0.789648104016425
Merged-chr12-69296764-4	chr12	69296676	69296876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027117)	promoter-TSS (NM_027117)	95.0	NM_027117	69554.0	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	6.35553215928992	6.35140486134528	6.44135359646781	6.37412691499758	6.17764547988605	6.14669168531339	6.17590885190628	6.20313016151883	-0.30807806119144	0.155114080944415	0.440665143386251
Merged-chr11-104545968-4	chr11	104545875	104546075	+	896.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145436, intron 1 of 18)	B3A|SINE|B2	4645.0	NM_001285990	217232.0	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	3.91331867200283	4.37449585465802	3.91385387943784	3.87952779510997	4.41339116892362	4.0401173150674	4.2504161316555	4.99138006116387	1.05475754038413	0.0228216108726779	0.139554934734221
Merged-chr2-90552600-3	chr2	90552515	90552715	+	842.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	L4_A_Mam|LINE|RTE-X	28032.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.3585333267558	3.62869422608518	3.4115741173171	3.24975868233942	3.0410535763935	3.16903852331311	3.17566560074094	2.9880528227574	-1.25558430295439	0.0292019817969101	0.164313665005712
Merged-chr7-64409040-4	chr7	64408958	64409158	+	736.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028626, intron 2 of 2)	intron (NM_028626, intron 2 of 2)	16436.0	NM_001355124	73724.0	Mm.10093	NM_028626	ENSMUSG00000033429	Mcee	1110007A04Rik	methylmalonyl CoA epimerase	protein-coding	4.07696991914051	3.82747082361155	4.40661002922462	4.23386862409478	3.96175015973629	3.68673829491116	4.10548601236896	4.20859777988439	-0.390592704043063	0.391528310659521	0.691279263407274
Merged-chr1-157077246-4	chr1	157077182	157077382	+	884.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31368.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	4.56423207098697	4.38575353497161	3.68006210279952	3.8572986128991	4.38431426161711	4.20516573412867	3.79207632041195	4.25966797572831	0.0318581571867599	0.949141634950361	0.9816904115743
Merged-chr14-105435426-4	chr14	105435316	105435516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045859, intron 2 of 2)	intron (NR_045859, intron 2 of 2)	7857.0	NR_045859	71362.0	Mm.410781	NR_045859	ENSMUSG00000115548	5430440P10Rik	-	RIKEN cDNA 5430440P10 gene	ncRNA	6.07529140103159	6.51368243813013	6.59126809543974	6.98493824250468	7.12423535259413	7.14670660630619	7.45837603694883	7.24509231507024	0.896324108798531	0.000385596769437424	0.00624065312682729
Merged-chr2-35978759-4	chr2	35978670	35978870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029774, intron 1 of 9)	intron (NM_029774, intron 1 of 9)	854.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	5.77993770809869	5.64300991026327	5.33981664692945	5.31979833618429	5.27690168703572	5.79039745761473	5.28216607873222	5.30472362383981	-0.176441813970643	0.565491285061741	0.807565364947013
Merged-chr8-31097198-4	chr8	31097102	31097302	+	921.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357223)	TTS (NM_001357223)	5552.0	NM_001357223	66959.0	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	4.87138523215986	4.75140732261183	4.50232037545157	5.02164494546254	4.99612807407549	4.97223875535095	4.65835398460754	5.06663355633569	0.234602540362866	0.50213162772014	0.769457185302407
Merged-chr2-165056000-2	chr2	165055900	165056100	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027852, intron 1 of 7)	intron (NR_027852, intron 1 of 7)	364.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	3.39118040634483	3.77026727673607	3.39161664520391	2.74026807226011	4.09218956845326	3.63263316522083	3.70795055564381	3.56655794547746	1.18937163891561	0.0599111937763606	0.258246161315786
Merged-chr5-139344272-4	chr5	139344208	139344408	+	890.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197980, intron 1 of 2)	intron (NM_197980, intron 1 of 2)	858.0	NM_197980	68033.0	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	4.43929007437741	4.2845695897148	4.12884355334009	4.10214452297825	4.37206611948461	4.25456494344989	4.53118884659685	4.26888354463836	0.30980777003354	0.427127215763262	0.718354140121047
Merged-chr11-29526323-4	chr11	29526186	29526386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133767)	promoter-TSS (NM_133767)	-111.0	NM_001282120	76784.0	Mm.285429	NM_133767	ENSMUSG00000020459	Mtif2	2310038D14Rik|2410112O06Rik|IF-2(Mt)|IF-2mt|IF2(mt)	mitochondrial translational initiation factor 2	protein-coding	5.53358166490074	5.34501501737958	5.4559046962363	5.59372122564871	5.00677030194619	5.25856823937275	5.25604972568839	5.2784728173495	-0.537635345247681	0.0627247204052822	0.265385458482464
Merged-chr3-97158757-4	chr3	97158664	97158864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019800)	promoter-TSS (NM_019800)	-13.0	NM_019800	66659.0	Mm.101368	NM_019800	ENSMUSG00000028093	Acp6	5730559A09Rik|ACPL1|AU022842|mPACPL1	acid phosphatase 6, lysophosphatidic	protein-coding	7.35019126542772	7.55681009726188	7.36176461959326	7.53391918919722	7.47084367847696	7.48635531802292	7.68762126105369	7.4555377063116	0.0883735571200378	0.617535596769524	0.8356253800703
Merged-chr6-42396613-4	chr6	42396504	42396704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3634.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	8.23966675330622	8.24157660504767	8.3830323851402	8.41684230586613	8.16199759581831	8.06656462829874	8.10626072083486	8.23558622709128	-0.231328768717807	0.134830000668921	0.408733586780799
Merged-chr2-103495811-2	chr2	103495705	103495905	+	593.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-10652.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	3.14532711960766	3.42793327220684	3.14564032233474	3.49193499379284	3.74818872499063	3.39246846944115	3.82078646282082	3.51031898045599	1.00861528703195	0.0672897636660058	0.276760550559495
Merged-chr13-113877609-4	chr13	113877486	113877686	+	891.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	83078.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	4.14278433136401	3.93719344810243	4.1433925014262	4.26677595443799	4.4189261975045	4.3168325245006	4.38442664022284	4.32085122155332	0.548245905397249	0.163790983707688	0.453549053854485
Merged-chr7-44997655-4	chr7	44997540	44997740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016849)	promoter-TSS (NM_016849)	-8.0	NR_045611	54131.0	Mm.3960	NM_016849	ENSMUSG00000003184	Irf3	C920001K05Rik|IRF-3	interferon regulatory factor 3	protein-coding	6.31459373558579	6.60204489652856	6.21310857470334	6.26306747669043	7.17536716648013	6.87938666921952	6.6250289930764	6.69860452551139	0.743756951219989	0.00148868746377485	0.0185477481155312
Merged-chr14-26526386-4	chr14	26526292	26526492	+	784.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 1 of 22)	intron (NM_001310445, intron 1 of 22)	8232.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	4.10002376686452	3.69916905672981	4.36438665872803	4.24828108071146	4.5082136051545	4.32140565758775	3.87439997896146	4.27965194471372	0.352446033370622	0.442271077461057	0.729012256605129
Merged-chr5-65535574-4	chr5	65535495	65535695	+	952.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1650.0	NM_016786	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	4.7255545409675	4.55190133939099	4.43634821863386	4.47421319102284	4.8983210547412	4.65855160332081	4.41679363039796	5.07573308671609	0.521893256808153	0.155396308186338	0.440985819425086
Merged-chr3-121595495-2	chr3	121595395	121595595	+	927.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47990.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	3.13598762227938	2.979514099178	3.37467476766859	3.14070750653588	3.04965133707766	3.31419744273015	3.60435131603082	3.57351680962997	0.857021911602945	0.134727480149488	0.40859681762081
Merged-chr7-97155302-4	chr7	97155186	97155386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	73535.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	5.69478030027684	5.40572597237307	5.71942821619962	5.72648983750978	5.47620363785653	5.20047236710305	5.5422818952441	5.51256346466993	-0.348155744743506	0.210599499442319	0.515129270474392
Merged-chr10-91032634-3	chr10	91032537	91032737	+	863.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042558, intron 16 of 26)	intron (NM_001042558, intron 16 of 26)	50106.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	3.68525089373325	3.79507642419785	3.61229061503724	3.78556320903838	5.01128611834493	4.49658131712982	5.08617425541656	4.89584213023166	2.77239353195541	8.73443692098936e-10	5.65703808552413e-08
Merged-chr10-81997369-4	chr10	81997263	81997463	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-50760.0	NM_001319203	408062.0	Mm.391409	NM_001024626	ENSMUSG00000061371	Zfp873	-	zinc finger protein 873	protein-coding	5.17257138736095	5.62379251516103	5.13765872796242	5.1549175478585	5.75281858583709	5.65982299973103	5.51169107456697	5.70878112104226	0.657016620712049	0.0228072725643498	0.139503209921617
Merged-chr5-137872829-4	chr5	137872696	137872896	+	866.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1038.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	4.12654971845659	3.95899361454096	4.33566817580291	3.94233054385113	4.08860898244241	3.6901605037855	4.19551123844187	4.21207609925493	-0.0666441941049765	0.880873896522829	0.955289696285915
Merged-chr12-85288638-4	chr12	85288532	85288732	+	977.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172414)	promoter-TSS (NM_172414)	41.0	NM_172414	72350.0	Mm.158810	NM_172414	ENSMUSG00000045064	Zc2hc1c	2810002I04Rik|AV046379|Fam164c	zinc finger, C2HC-type containing 1C	protein-coding	6.43418015855854	6.00448824234636	5.2297881045325	5.7720459826064	6.36502169554482	6.53050962264697	5.83616733150822	5.40770888328611	0.273531358542452	0.623191528434817	0.838922840312846
Merged-chr6-146271314-3	chr6	146271204	146271404	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 37 of 56)	intron (NM_019923, intron 37 of 56)	230919.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	5.20122419648733	5.19899704456995	4.83311011168847	5.4177261054431	4.05054564665898	4.44779507602209	4.29532217617886	4.25757197876397	-2.06639558896429	7.20721677199295e-08	3.17648596045626e-06
Merged-chr16-49854316-4	chr16	49854227	49854427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1327.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	7.25810900587998	7.20212233996803	7.44941501007267	7.55883914064729	7.27577720910001	7.25096156550671	7.49309095797738	6.92253192988633	-0.174629748553815	0.396761617629228	0.695372415340369
Merged-chr5-62933810-4	chr5	62933691	62933891	+	839.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119968.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	3.43525040033177	3.38727794670695	3.68283564150492	3.48156296514849	3.96321872134833	4.01536675014737	4.17001017588068	4.10940123677835	1.65207050414341	0.000298735347491315	0.00505537526777831
Merged-chr11-118103061-4	chr11	118102968	118103168	+	990.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 20 of 80)	intron (NM_001167746, intron 20 of 80)	26151.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	4.95809304293242	5.11297146863623	4.92185943606511	5.04319335488988	5.37923543879405	5.13401332490698	5.22515750718195	4.95560835922153	0.334905450111096	0.278110887054588	0.590263137121939
Merged-chr13-73469584-4	chr13	73469446	73469646	+	977.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 1 of 13)	intron (NM_145376, intron 1 of 13)	2163.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	4.44636602059166	5.22970308073654	4.94401897186858	4.44419837165243	4.66952285449311	4.75567193202775	4.38038892593304	4.53422246739106	-0.449745091498424	0.267498258393852	0.579184214653136
Merged-chr15-38633684-4	chr15	38633536	38633736	+	847.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-28268.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	3.32603783121669	3.21404677377494	3.38282854792457	3.4163648795796	3.25526053570851	3.31668453472007	3.52270890377135	3.43485354411044	0.14724218151968	0.776958115644055	0.913015118902433
Merged-chr8-120682882-4	chr8	120682794	120682994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14574.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	6.18566930038417	6.73392793136313	5.94996326152172	5.81138770398258	6.39930087129014	6.26117704473108	6.1934423689508	5.79541730487261	-0.0486427346779965	0.872097136398403	0.951880791739407
Merged-chr8-122432975-4	chr8	122432884	122433084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007806)	promoter-TSS (NM_007806)	-44.0	NM_007806	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	7.48440471964684	8.24860938668686	7.55921420565048	7.10772946640751	7.79912731789874	7.41330198682922	7.6325782156819	7.14644062320601	-0.189248681610674	0.484813429296101	0.758880279356098
Merged-chr17-24736517-4	chr17	24736422	24736622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346668)	promoter-TSS (NM_001346668)	-71.0	NM_013759	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	8.26657711611008	8.5304768892134	8.05963394492652	7.9239349991605	8.16836334528037	8.27670697441173	8.37243351181078	7.9857778193928	-0.00517657452891204	0.978800736153609	0.992516114931184
Merged-chr14-73381276-2	chr14	73381176	73381376	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	4013.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	4.08873116005357	3.47403260475821	3.76338263023837	3.78020207533399	3.78675770012471	3.82853966031695	3.89642573401963	3.91108132313938	0.185404706312487	0.691806975242828	0.87467626526963
Merged-chr2-153161303-4	chr2	153161203	153161403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133847)	promoter-TSS (NM_133847)	2.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	6.46432739955283	6.89885270447377	5.66958032102315	6.14033585843967	6.68541978691196	6.84361896988461	6.39810335984302	6.44380475114481	0.342656607289187	0.258991078887074	0.57079429993676
Merged-chr1-136581540-6	chr1	136581399	136581599	+	916.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-43402.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	3.76355556983702	3.29717797362063	3.24056232051072	3.22097648238007	3.35123328888677	3.53715163044197	3.29164535593875	3.57749681564719	0.171591728703772	0.752106783567073	0.902358499810157
Merged-chr8-83739389-4	chr8	83739263	83739463	+	974.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	intron (NM_011925, intron 1 of 19)	1948.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	4.33842146198122	4.0205719238687	4.65281602163635	4.37279104600717	4.97966313203374	4.82807257540778	5.06148782708858	5.02606182149136	1.30551219942861	0.000323428570973751	0.00539386934168302
Merged-chr19-12591120-4	chr19	12591031	12591231	+	855.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015503, intron 1 of 1)	intron (NR_015503, intron 1 of 1)	5435.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	3.97113240121211	4.31423045477496	4.29365022252373	3.78051381966021	4.71595721178516	4.42519511908281	4.95450179698171	4.86018379901878	1.53016606894815	0.000156582045812708	0.00295794225345569
Merged-chr5-115845133-4	chr5	115845048	115845248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007708)	promoter-TSS (NM_007708)	-508.0	NM_007708	12704.0	Mm.8321	NM_007708	ENSMUSG00000029516	Cit	C030025P15Rik|CRIK|CRIK-SK|Cit-k	citron	protein-coding	6.63028470508325	6.44354133390814	6.43247076258724	6.69332101109745	6.73215697071872	6.62707746660949	6.59764301655225	6.68657857767897	0.144133760058801	0.489549661462564	0.761848799656158
Merged-chr4-133131410-5	chr4	133131279	133131479	+	865.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	746.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	4.59816482845876	4.90368387726356	4.43492055449591	4.12344149146533	4.540046814917	4.73215410718727	4.1255559607083	4.51659992722322	-0.0960713798810154	0.820635017050593	0.93128375814936
Merged-chr17-84626478-4	chr17	84626376	84626576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172256)	promoter-TSS (NM_172256)	-23.0	NM_172256	213575.0	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	6.2635858886222	6.20280707129315	6.22514825837515	6.41006461924821	6.43749483988346	6.47924841555893	6.70979104709159	6.35390633519073	0.313588116701112	0.159288297547991	0.446711387698217
Merged-chr3-107778165-4	chr3	107778035	107778235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17666.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	5.68186079427337	5.67580119343532	6.23754813839055	6.14139850538791	6.01074759632366	6.15476095478168	6.13203879596533	5.97516935470028	0.154037231881332	0.560767017029231	0.804718362636311
Merged-chr7-141475381-6	chr7	141475299	141475499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252588)	promoter-TSS (NM_001252588)	163.0	NM_053082	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	5.29293362500316	5.35665815121723	5.05346153850486	4.77094571609826	5.42342516478608	5.69632747039206	5.46835546761823	5.87971609314508	0.894425973234523	0.00451585496651958	0.0440562007486153
Merged-chr7-43883797-3	chr7	43883707	43883907	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019928, intron 3 of 5)	intron (NM_019928, intron 3 of 5)	2635.0	NM_019928	56640.0	Mm.42080	NM_019928	ENSMUSG00000006948	Klk4	ESMP1|KLK-L1|PSTS|Prss17	kallikrein related-peptidase 4 (prostase, enamel matrix, prostate)	protein-coding	3.4755343565813	3.74478099886393	3.47594473806701	3.69343621894672	3.70935294266355	3.82704427864611	4.05536030809204	3.90218962181003	0.776764181066062	0.100870782443992	0.348588698527986
Merged-chr4-127027498-4	chr4	127027426	127027626	+	777.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045010, intron 9 of 11)	intron (NR_045010, intron 9 of 11)	6225.0	NM_023603	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	3.81010881781205	3.91943578332253	3.60723693212387	3.58585453647266	3.63945858967291	3.48004847076996	3.64654554405707	3.65915850343715	-0.379176773845566	0.431372537091964	0.721675024613162
Merged-chr17-65854231-4	chr17	65854150	65854350	+	932.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198949, intron 6 of 9)	intron (NM_001198949, intron 6 of 9)	30673.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	5.3310253905815	5.50617131260921	5.27616422038066	5.2350756401954	4.71418433761683	4.75590918857114	4.77436403306245	5.05527516574825	-0.988907077275303	0.00191268238122255	0.0225815306286574
Merged-chr4-11628187-4	chr4	11628076	11628276	+	839.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48514.0	NM_001256142	100503583.0	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	3.55310862686972	3.52899357199889	3.66355035408184	3.71563657322257	3.86485175449499	3.66952575443304	3.88540217056337	3.49316305601727	0.362925967850134	0.448328652881234	0.733633389660061
Merged-chr3-145131457-3	chr3	145131366	145131566	+	743.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162538, intron 7 of 16)	intron (NM_001162538, intron 7 of 16)	12866.0	NM_025714	52184.0	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding	3.78345258670291	3.25988848459244	3.82663997474925	3.33008344953417	3.15601894234872	3.55469268920964	3.10834643270855	3.43520150278726	-0.842298033975908	0.146997197756233	0.427711790830681
Merged-chr10-10120671-4	chr10	10120561	10120761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-219621.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	6.79271594055577	6.55761306887894	7.57536734652464	7.6792966238031	6.23167791022037	5.59551635976008	6.32222269971193	6.11778858032632	-1.64346432387679	2.81043043779937e-07	1.09733202486078e-05
Merged-chr9-44318540-4	chr9	44318488	44318688	+	784.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359259, intron 1 of 13)	intron (NM_001359259, intron 1 of 13)	1694.0	NM_001359259	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	3.71874575846644	3.86982113367263	3.71925790537516	3.72356665343818	3.93798650978294	3.72625650227167	3.65155259734663	3.66368960579276	0.00226758151562351	0.99606511000916	0.998543856884531
Merged-chr11-118275242-4	chr11	118275120	118275320	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033528, intron 9 of 20)	intron (NM_001033528, intron 9 of 20)	15024.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	5.50310609836476	5.5215026479033	5.1196165831428	5.39102241004239	5.18392970908835	5.03375207213635	4.8712009034102	5.57427988471508	-0.364033961034481	0.259791122382901	0.571577407891089
Merged-chr9-66213777-4	chr9	66213667	66213867	+	970.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010019, intron 2 of 11)	intron (NM_010019, intron 2 of 11)	55541.0	NM_010019	13143.0	Mm.304472	NM_010019	ENSMUSG00000032380	Dapk2	-	death-associated protein kinase 2	protein-coding	5.16730243144185	6.14197427171861	5.3918752161507	4.68652397712863	5.69202857857639	5.50889458630113	5.50239539156986	4.9778206886642	-0.0234403935656436	0.954546496876795	0.983787173349859
Merged-chr8-106585829-4	chr8	106585725	106585925	+	920.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1318.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	4.90219550445966	4.6508716002687	5.11567210854666	4.73351666538004	4.88418696672859	4.29184647813818	4.81155935743342	4.37497895891306	-0.47462035274687	0.220657681787382	0.528632261853997
Merged-chr5-145114763-4	chr5	145114673	145114873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	CpG	517.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	6.69561671247031	6.50420806463229	6.86634879689541	6.57582694328112	6.54695777629665	6.84304340105828	7.09179790984908	6.98701851775684	0.305110121147201	0.173238286325385	0.467220322400386
Merged-chr9-100504538-4	chr9	100504441	100504641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 2 of 3)	L3|LINE|CR1	2315.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	5.89363482364881	6.34773420452156	5.75068579485933	5.08154862007061	6.34812883587687	5.9771545317774	5.74629270264872	5.58443800523508	0.176782098196045	0.621083322261621	0.837686925290103
Merged-chr8-82843889-4	chr8	82843785	82843985	+	985.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19471.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	5.84312397033281	5.01379313859556	5.71485550720192	5.61431155243902	5.0721456184129	5.32989725296791	5.40869304581888	5.3441819336685	-0.513049603932373	0.110683747359914	0.367477888583017
Merged-chr4-46565817-4	chr4	46565704	46565904	+	901.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178893, intron 1 of 12)	intron (NM_178893, intron 1 of 12)	636.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	4.7314071436838	3.80932613376923	5.11603176709483	4.99531435654561	4.44463210588821	4.19596478925995	4.10627964803409	4.37161310319983	-1.03554207177253	0.0354413245306902	0.1868832281598
Merged-chr10-61715282-4	chr10	61715158	61715358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284300)	promoter-TSS (NM_001284300)	-5.0	NM_178058	71361.0	Mm.286309	NM_153779	ENSMUSG00000020085	Aifm2	5430437E11Rik|Amid|D730001I10Rik|PRG3	apoptosis-inducing factor, mitochondrion-associated 2	protein-coding	6.3736533875919	6.1182970576153	6.17877756677124	5.81484957202512	6.06076934846451	6.07610268246696	6.12779365046635	5.98764856597418	-0.0837019238366798	0.73936730090674	0.897284218525646
Merged-chr1-132390871-3	chr1	132390763	132390963	+	762.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311107)	promoter-TSS (NM_001311107)	523.0	NM_178874	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	4.01679738586097	3.76813729496254	4.01743898905361	3.9273856507988	3.4519750048398	3.67951280105384	3.42370083060129	3.88037553422425	-0.965317337236468	0.0478616333885572	0.225643505041096
Merged-chr8-41002108-2	chr8	41002011	41002211	+	910.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001005863, intron 8 of 13)	B1F1|SINE|Alu	-15357.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	3.70490358722256	3.52143656968928	4.10484436264191	3.68644448574534	4.25775587494406	3.56839251197011	3.99793444525694	4.33582196028766	0.844368968710766	0.0914986452476701	0.33051418777386
Merged-chr16-18426478-4	chr16	18426375	18426575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013711)	promoter-TSS (NM_013711)	58.0	NM_013711	26462.0	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	5.73794993901224	5.81120147314875	6.11978774801984	6.19052499831118	5.77378042036607	6.01519355579667	5.90230353250498	5.9505290117066	-0.137791376021383	0.594212655411481	0.823393125307614
Merged-chr2-71377636-4	chr2	71377551	71377751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10097.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	5.61388319525557	5.55680065329936	5.61486103408796	5.50464941655255	5.70016280317212	5.7361996500135	5.4774042916516	5.89262927012793	0.239729212239137	0.362243865353584	0.667447285651491
Merged-chr12-38929122-4	chr12	38929013	38929213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	145402.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	5.65013941937567	5.26085157854859	6.13012061193094	5.76745247488557	5.40330150527957	5.51417086553782	5.59697953539027	5.48497042053311	-0.402819434976743	0.182608323550954	0.479233234647102
Merged-chr6-148436607-4	chr6	148436524	148436724	+	962.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198967, intron 1 of 19)	intron (NM_198967, intron 1 of 19)	7728.0	NM_198967	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	4.69785419792372	4.52955150614744	4.69861538455989	4.92156919105007	4.70535848503714	4.62484280950217	4.71352786762975	4.4909869504778	-0.201206844106933	0.569439247806554	0.809366519988776
Merged-chr17-33640176-7	chr17	33640004	33640204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028279, intron 1 of 9)	intron (NR_028279, intron 1 of 9)	2009.0	NR_028279	378460.0	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	6.34140279329683	6.33442405954618	6.39360707517465	6.21189759492386	6.08266170370098	6.15982710612822	5.88138803348082	6.1100284638344	-0.385502145601354	0.09235836222626	0.33242191873498
Merged-chr8-94696164-4	chr8	94696085	94696285	+	760.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026385)	promoter-TSS (NM_026385)	57.0	NM_026385	67801.0	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	3.58455170431957	3.46099548656119	3.79809507072181	3.57978503871934	3.91926231028877	3.70257474542722	3.68102303132631	4.01973427268303	0.703269620812067	0.132746811135082	0.405738749474138
Merged-chr16-30009105-4	chr16	30009015	30009215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033631, intron 1 of 2)	CpG	448.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	5.38495770415402	5.59913947577597	5.61630339034454	5.97323908878532	5.41880503284295	5.59423017307179	5.66412230529632	5.87290979437511	-0.0689218411110192	0.81432048470313	0.928327532350968
Merged-chr14-73225436-2	chr14	73225336	73225536	+	734.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	-12455.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	2.95162993671731	3.00465341105731	2.95199300381477	2.77002905076034	3.11117323021714	2.86045091743583	2.81508243836688	3.12154535816927	0.316498386517291	0.600638817907253	0.826881168058353
Merged-chr12-110908011-3	chr12	110907914	110908114	+	926.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175336, intron 3 of 20)	intron (NM_175336, intron 3 of 20)	18750.0	NM_001081057	104859.0	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	4.10465496902116	4.48569513145972	4.63734259785178	4.33202028085041	3.80366153523795	4.17927000308857	4.39828435515206	4.15251196229954	-0.639875177786242	0.138669857928272	0.414217206658965
Merged-chr18-44827860-3	chr18	44827750	44827950	+	994.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163013)	promoter-TSS (NM_001163013)	-815.0	NM_001163013	240255.0	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	3.8256332845313	3.35608377086864	3.94953118780354	3.14609696748207	5.04267960964141	5.09227043022975	4.67889859312178	4.5947892964047	3.37271636240536	3.58289062579971e-12	3.48873559307521e-10
Merged-chr7-126725325-4	chr7	126725202	126725402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-20486.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	6.19324069971572	6.36673047293896	6.43921406730661	5.65357368091945	6.26266021976567	6.20600122754641	5.86002183370279	6.08947035030885	-0.100838545689251	0.721695584861209	0.888884104579521
Merged-chr3-97294941-3	chr3	97294858	97295058	+	767.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67594.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	3.02962834000658	3.0018854904822	3.15635765903175	3.0477116100744	3.45576617163132	3.38421941037995	3.45962810286666	3.15480818078191	1.20076271510329	0.0267921402505142	0.155557331558948
Merged-chr12-102414668-3	chr12	102414569	102414769	+	946.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 2 of 13)	intron (NM_011175, intron 2 of 13)	25144.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	4.27567879988322	3.74009476805957	4.73046429997892	4.77607518686044	3.73237574132692	3.62205802830067	3.62756226616345	4.23083008178066	-1.60348758137384	0.00314918437123404	0.0331741995654417
Merged-chr10-118795195-4	chr10	118795084	118795284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73719.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	5.56211104279484	5.61963648746058	5.81150122565802	5.80621160552244	5.88088259278724	5.39889511408323	5.63975239309547	5.41407684154677	-0.160795291699635	0.566454982348025	0.807900514541786
Merged-chr10-111516314-5	chr10	111516131	111516331	+	913.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9945.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	5.04191539751926	4.61251746729712	5.46981227299715	5.30339783009703	4.84416147994726	4.78615291974019	5.0513205157559	5.28476769300899	-0.276453020603038	0.448725068368574	0.733910883304383
Merged-chr9-5308174-4	chr9	5308073	5308273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007609)	promoter-TSS (NM_007609)	-676.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	6.25534004153396	5.89470450115488	5.47316337775494	5.48166155747048	5.6898364878851	5.7917959080924	5.50430895305845	5.52820301151544	-0.286177914528965	0.351191519704	0.658644512922243
Merged-chr2-152789683-4	chr2	152789575	152789775	+	976.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	35502.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	4.78635950016465	4.61281506768126	4.53700381595673	4.96376516055718	5.18337599439296	4.88402595241385	4.64666955150823	5.05551201186629	0.431061162299517	0.227088816621981	0.535726994509345
Merged-chr15-98512497-2	chr15	98512397	98512597	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	7337.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	3.35064011049105	3.43661855122362	3.71683288961944	3.44017013145925	3.45397431191797	3.46442749732788	3.3974861803219	3.51882162894381	-0.101197339893782	0.84053758265454	0.939305852792169
Merged-chr16-38695360-3	chr16	38695248	38695448	+	883.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	MLT1D|LTR|ERVL-MaLR	17687.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	3.92460730416668	3.92540644945155	3.6630132603111	3.56853218384888	3.65343400595729	4.09523883210114	3.90802333032251	3.92279917058771	0.36521940576861	0.433807816516633	0.723256357491443
Merged-chr2-75732727-2	chr2	75732630	75732830	+	857.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-28067.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	2.77109161054507	2.56004685769103	2.88126897622597	2.3518844763215	2.46273696578923	2.47683496016683	2.44075604545681	2.64994619962463	-0.744625351419412	0.307633329117143	0.619961289162773
Merged-chr10-21992560-4	chr10	21992482	21992682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161849, intron 1 of 11)	intron (NM_001161849, intron 1 of 11)	359.0	NM_001161849	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	6.32617813387864	6.34954385953806	6.07427905365354	6.00072907194978	6.21429967208327	6.31314803979704	6.32946750860801	5.95746917421912	0.0381030404399816	0.874866544659937	0.952974608345699
Merged-chr3-83863140-4	chr3	83863047	83863247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21539.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	8.39455839426065	8.95569690208605	8.82378768989303	8.61301629206393	8.85249074708098	8.87329341990251	8.98326867152629	8.62721233864996	0.15815130224829	0.375487525670705	0.678466392245199
Merged-chr17-81712612-4	chr17	81712515	81712715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	25772.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	6.29434785280595	6.13471143151855	6.53867274473624	6.4662155323134	6.28358742299333	6.66573671796548	6.35512292552266	6.61051245513019	0.160753511598212	0.490923347054947	0.762599708110011
Merged-chr10-128057913-4	chr10	128057812	128058012	+	891.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1070.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	4.88107268681453	4.97958318365417	4.49869714676186	4.71999682169278	4.97177618137275	4.6306479242278	4.28892354743422	4.49589238150251	-0.308146739647312	0.427280854718153	0.718470808777302
Merged-chr11-4974773-3	chr11	4974677	4974877	+	937.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243043, intron 1 of 22)	intron (NM_001243043, intron 1 of 22)	-12047.0	NM_001355659	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	4.69120945578679	4.41611661206402	4.48561434210298	4.21052239007642	3.92091381553105	4.113335885787	3.97219254530142	4.14128707862414	-1.05250273214994	0.0123146799933002	0.0915265453078194
Merged-chr3-117868977-4	chr3	117868903	117869103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029655)	promoter-TSS (NM_029655)	-67.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	7.72295865015157	7.56695309152373	7.85668367882214	8.06734294479662	7.88576743563777	7.54336007689454	8.28128560033081	7.76733796293956	0.0998945997814519	0.64283075768077	0.84935134647267
Merged-chr11-19925581-4	chr11	19925482	19925682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	CpG	1140.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	6.95880438261126	7.39617290859099	7.08156972861656	6.75928241162274	6.85132012877598	6.89939314270043	6.93744601960877	6.68578673838732	-0.300682796217524	0.177076822913614	0.472313242080796
Merged-chr9-110407302-2	chr9	110407202	110407402	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081043, intron 1 of 24)	intron (NM_001081043, intron 1 of 24)	908.0	NM_001081043	104831.0	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	3.48882047859231	3.0068800281953	2.90900041628788	2.79898632969637	3.1431433355323	3.22481481398471	3.2733279573429	3.39013760699606	0.71868341298297	0.237386055888721	0.54758732450022
Merged-chr17-34325311-3	chr17	34325224	34325424	+	957.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033978)	promoter-TSS (NM_001033978)	-351.0	NM_001033978	381091.0	Mm.139204	NM_001033978	ENSMUSG00000067341	H2-Eb2	A130038H09Rik|H-2Eb2|Ia-5|Ia5|Iebeta2	histocompatibility 2, class II antigen E beta2	protein-coding	3.63291708079647	3.67961178497039	3.481904738912	2.60249999315784	5.09381005059571	4.88287807196468	4.95039169340742	4.76805419578534	4.06298835040572	3.00913987182246e-05	0.000728777022580642
Merged-chr3-145576235-4	chr3	145576128	145576328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346521)	promoter-TSS (NM_001346521)	12.0	NM_001346521	229937.0	Mm.24586	NM_001081094	ENSMUSG00000074182	Znhit6	2410019A14Rik	zinc finger, HIT type 6	protein-coding	6.7834407250777	6.59925964247057	6.61346553539566	6.37104644925596	6.42396570242918	6.45924293562811	6.65384586859652	6.49649076601298	-0.11244560026707	0.609382156578147	0.830967173169002
Merged-chr14-66812446-4	chr14	66812346	66812546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 11 of 13)	intron (NM_009955, intron 11 of 13)	56154.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	5.56968978239983	5.4505579518746	5.67219898277936	6.03051847273331	5.18968682745996	5.45229013058371	5.46124687170171	5.45641974632414	-0.572817959266629	0.0539733984926275	0.242582088230519
Merged-chr10-61146364-4	chr10	61146253	61146453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316674, intron 1 of 14)	CpG	1331.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	6.91499661982558	6.86541274554592	7.24190273742735	6.99907583346441	7.00483178270323	6.99667287335737	6.77063190412388	7.00097223141969	-0.0861349889878027	0.666375636097508	0.862000786313879
Merged-chr10-8817408-2	chr10	8817308	8817508	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	(TG)n|Simple_repeat|Simple_repeat	68662.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.28293607006258	3.28809851555006	3.66569034781742	3.42989124539449	3.58506519937376	3.51891262785094	3.33348937082801	3.6154234612522	0.317680764773962	0.535486199140411	0.789765706629649
Merged-chr11-59209282-4	chr11	59209151	59209351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024210, intron 4 of 6)	intron (NM_024210, intron 4 of 6)	890.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	5.80012460846018	5.83192552712971	5.91125609075763	5.37662009854181	5.35368219588588	5.54474025504892	5.83832404526839	5.7014670850497	-0.19229158207274	0.512460685682398	0.775836940008879
Merged-chr12-99883511-4	chr12	99883418	99883618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028354)	promoter-TSS (NM_028354)	-76.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	7.36480344800943	7.24943010369503	6.79677491483631	7.21944600212771	7.41039210448948	7.23600340710335	7.52640562321179	6.82219483827628	0.138133176466804	0.547188306860282	0.796733486632056
Merged-chr5-107950830-4	chr5	107950721	107950921	+	807.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	36256.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	4.45419056977946	4.10861460939604	4.77620847078583	4.53335675360333	4.3797352788091	4.09116136909178	4.39341565773864	4.36801915804816	-0.399034687510395	0.325609550094429	0.637173865018183
Merged-chr18-55517055-3	chr18	55516956	55517156	+	757.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-524465.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	4.01658339085213	3.58189504292648	4.22582910000757	4.27163302324436	3.94096361093253	3.77105883529803	3.63907929941019	3.76529286405151	-0.751609717879106	0.12529836636455	0.392890414954287
Merged-chr13-113605602-3	chr13	113605525	113605725	+	856.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	12939.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	3.62602804828559	4.03100243986346	3.36456770742038	3.08361523435217	2.91449726240709	3.36037630935249	3.16703850362508	3.10855927786314	-1.55631277953444	0.0148113635046472	0.103888258070288
Merged-chr14-31408038-4	chr14	31407938	31408138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	9639.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	6.12765073227565	5.66727950931928	5.42692540598694	6.31227671792639	5.8851654223474	5.50825462929089	5.57900432956625	6.00784388166848	-0.290452303473633	0.360016684728635	0.665611988334495
Merged-chr8-10711240-4	chr8	10711135	10711335	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	171219.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	5.52504054305045	5.85245102690401	5.92598209603735	6.0946354047628	5.24662835762641	5.20867081464248	5.28953670871246	5.31213679203052	-1.06036232459235	0.0002012420844384	0.00365786780598591
Merged-chr2-174471025-3	chr2	174470918	174471118	+	956.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025531, intron 1 of 5)	intron (NM_025531, intron 1 of 5)	1923.0	NM_025531	66390.0	Mm.182294	NM_025531	ENSMUSG00000016257	Prelid3b	2310042G06Rik|AA407013|Slmo2	PRELI domain containing 3B	protein-coding	4.4360768729866	4.38091889761576	4.3549690628472	4.35438481895978	4.00723851037281	4.19833069767384	3.94797513867237	4.65114928829856	-0.371664347056156	0.37868343904677	0.681198988427369
Merged-chr16-91846617-4	chr16	91846498	91846698	+	935.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 19 of 28)	intron (NM_001110275, intron 19 of 28)	85032.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	4.45825169053379	4.34544446796885	4.23050151709483	4.75020330917079	4.26002648855383	4.50144557095275	4.51894220277609	4.64960907449557	0.00616344569026775	0.987586481692208	0.995315979319888
Merged-chr7-89392996-2	chr7	89392896	89393096	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 1 of 14)	intron (NM_001360746, intron 1 of 14)	11226.0	NM_001360746	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	3.1633177523634	3.15246805014583	2.90791157928957	3.04278453731912	3.25380590799656	3.15130502327338	3.15192341517208	3.32512094556673	0.600257721184753	0.277661109435602	0.589700641340894
Merged-chr15-51920605-4	chr15	51920497	51920697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43156.0	NM_030132	78581.0	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23 small subunit processome component	protein-coding	6.22597688705194	6.45868594760669	6.39366404851606	6.61860740313693	6.47392245480278	6.11860421998795	6.32597073889914	6.05365406575138	-0.268059441490513	0.261698938949259	0.573611813883764
Merged-chr4-41368450-4	chr4	41368370	41368570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355508, intron 2 of 6)	intron (NM_001355508, intron 2 of 6)	16507.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	5.45099543726258	5.40246451973517	5.78587787235757	5.79217694724878	5.66755046951811	5.59819571776756	5.42482748963963	5.53331468884285	-0.115676924140986	0.678514493510825	0.868112820688421
Merged-chr1-173802943-3	chr1	173802846	173803046	+	744.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36027.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	3.01674590997474	2.72480571022952	2.87915650987518	2.28855855222669	3.30157670189949	3.13442555479955	3.2427042364496	3.67324923216479	2.52515057409967	0.00125126163462369	0.0161084376724326
Merged-chr12-4843955-4	chr12	4843850	4844050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170858, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	647.0	NM_001170858	238037.0	Mm.146087	NM_173416	ENSMUSG00000051721	Wdcp	A430092C04	WD repeat and coiled coil containing	protein-coding	5.45429991855869	5.29848625395072	5.34190132741735	5.10301711160416	5.74040754156379	5.14581923500457	5.12530733876878	5.50441496706808	0.226446790294873	0.473265012214681	0.751076459932416
Merged-chr4-75262544-1	chr4	75262444	75262644	+	673.0	f0_balb.idr	Intergenic	Intergenic	15748.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	3.1968653239994	3.36021513316579	3.50872967394704	3.15312785091619	2.99466955164602	3.11826479150747	2.85803957420109	3.3079240940647	-0.901086446531334	0.131227586134615	0.403257278999947
Merged-chr19-32792817-1	chr19	32792717	32792917	+	701.333313	f0_balb.idr	intron (NM_008960, intron 3 of 8)	intron (NM_008960, intron 3 of 8)	35240.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	3.66548208622926	3.62877200744346	3.82052070861794	3.9841275106407	3.77257814740916	3.47301294545734	3.80441902332517	3.86579513817248	-0.160328971273485	0.73877599917578	0.89698683073579
Merged-chr14-17414721-1	chr14	17414621	17414821	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-246239.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	6.61635797342874	6.01711567839114	6.47611908439961	6.74676788353405	6.32874105461201	6.35482732195803	6.56883409654321	6.29319157081391	-0.166036518869171	0.509300981881781	0.773960180154769
Merged-chr1-192745218-4	chr1	192745086	192745286	+	846.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 3 of 11)	intron (NM_144881, intron 3 of 11)	26033.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	3.62307075497001	3.66358926221156	3.62357543604453	3.37885750716141	3.75986387573537	3.56889814389155	3.44103467332211	3.86261700790682	0.331749157623967	0.500294281329853	0.768850577358824
Merged-chr6-82652625-4	chr6	82652519	82652719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025882, intron 1 of 3)	CpG	246.0	NM_025882	66979.0	Mm.195753	NM_025882	ENSMUSG00000030042	Pole4	2400007P05Rik|5830430F06Rik	polymerase (DNA-directed), epsilon 4 (p12 subunit)	protein-coding	7.01908465382748	6.89601797999573	6.72014490652622	6.82276907085286	6.97910556901097	6.98629163713615	7.0439007351997	7.05122054588978	0.206719081465817	0.278603613685687	0.590822005054816
Merged-chr8-120041042-3	chr8	120040948	120041148	+	940.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310635, intron 14 of 14)	intron (NM_001310635, intron 14 of 14)	48610.0	NM_001310635	78892.0	Mm.264680	NM_030209	ENSMUSG00000031825	Crispld2	1810049K24Rik|Lcrisp2|Lgl1|coffeecrisp	cysteine-rich secretory protein LCCL domain containing 2	protein-coding	4.10476176987442	3.81346621686522	4.10541092858597	3.87782736743283	3.78568766078854	3.7103668510203	3.95458791884356	3.87196765294772	-0.397449020862652	0.372797544570156	0.676473676259602
Merged-chr9-7332040-4	chr9	7331959	7332159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12338.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	6.55136166236485	6.74247416855471	7.00628485777265	7.01413131056079	6.45416935973723	6.72943567099881	6.59886413550247	6.16413658232128	-0.503033101867069	0.0322842190626046	0.175873138577769
Merged-chr12-82261770-4	chr12	82261678	82261878	+	954.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-49571.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	4.62313616698501	4.50220839040321	4.66477348842553	5.06290476254168	4.74483472841113	4.71439509826031	4.75754794429345	4.94847261626794	0.0790931477833196	0.828096932904832	0.934048198831045
Merged-chr3-84820457-4	chr3	84820366	84820566	+	904.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 1 of 13)	MER58A|DNA|hAT-Charlie	4889.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	4.35286562785395	4.1783649466359	4.39906423595908	4.65737173261293	4.63967876608101	4.48264151319079	4.62082614954178	4.74585587140127	0.442331126299138	0.244576138755375	0.5557618752544
Merged-chr9-96713325-4	chr9	96713238	96713438	+	856.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359959, intron 2 of 2)	intron (NM_001359959, intron 2 of 2)	6107.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	4.5625475611825	4.98333662816628	3.99648933403527	4.7061112917629	4.93882889311699	4.69620394513676	4.80418346005098	4.47370756203604	0.26967519541333	0.521784643811199	0.781650198081391
Merged-chr1-45917306-4	chr1	45917266	45917466	+	908.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016917, intron 5 of 7)	intron (NM_016917, intron 5 of 7)	8228.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	4.23508406584602	3.93886264280848	4.14588283874838	4.33332615804034	4.21484374522786	4.2706920426679	4.1731948727683	4.04691051131722	-0.00587540709565254	0.988559892014782	0.995479932082398
Merged-chr7-100009934-2	chr7	100009834	100010034	+	806.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291320)	promoter-TSS (NM_001291320)	16.0	NM_001291320	69121.0	Mm.285295	NM_133709	ENSMUSG00000030732	Chrdl2	1810022C01Rik|Chl2	chordin-like 2	protein-coding	2.95742684407478	2.85517183116946	2.8982044429891	2.71057262554798	2.91165368423132	2.65609215816069	2.88788285506586	3.16702592103383	0.305200325181451	0.628797926544592	0.841823003934767
Merged-chr2-49452108-4	chr2	49452001	49452201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172663, intron 1 of 13)	CpG	615.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	7.8019707221648	7.81929801709448	7.73189072568719	7.45916310659494	8.21009444832267	8.03357105383715	7.80328995403518	7.81330845314741	0.362825539395835	0.0546640860229578	0.244137656563039
Merged-chr7-83615968-1	chr7	83615868	83616068	+	835.0	f0_c57.idr	exon (NM_177695, exon 18 of 23)	exon (NM_177695, exon 18 of 23)	-16049.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	3.6118169958994	3.73461173653259	3.49827810858676	3.08655099855392	3.37221291760581	3.93754272257603	3.88610293065848	3.66368762986851	0.71765336964765	0.188888806535918	0.487687851483034
Merged-chr3-79239382-4	chr3	79239287	79239487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	26468.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	6.02078926372048	5.8579141586031	6.14916958323404	6.20687300573193	6.48642094629565	6.24189789065382	6.25088588917305	6.16478356946673	0.344491223685576	0.148779486350973	0.430696887057749
Merged-chr8-84436112-1	chr8	84436012	84436212	+	668.0	f0_balb.idr	intron (NM_001252060, intron 1 of 47)	intron (NM_001252060, intron 1 of 47)	20748.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	3.23706969023791	3.51842637583124	3.48746871974782	3.570111170056	2.61025500993859	2.72728620803826	2.77386099257104	2.78005622561357	-4.34193135081767	5.39536849225687e-06	0.000158824207572519
Merged-chr9-111047466-4	chr9	111047360	111047560	+	995.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9784.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	4.85672473297653	5.06388290536143	4.89579598002732	4.9133330564727	5.22800038112606	4.95534963791888	5.41168696864234	5.00087750599206	0.445136743010088	0.158392966955301	0.445212020688081
Merged-chr5-21056179-4	chr5	21056094	21056294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356591)	promoter-TSS (NM_001356591)	-283.0	NM_011203	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	8.76460510636564	8.85783937330052	8.80731777435359	8.90450281791702	8.85678588292283	9.04875401859624	9.15516932419307	8.81793111081268	0.171647492432814	0.26025194419994	0.572025479749492
Merged-chr2-91723561-4	chr2	91723468	91723668	+	910.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6570.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	4.36843792587112	3.82611510668629	3.81706215298931	4.20701289301107	3.98654628252864	4.10221947320326	3.85793267681943	4.32844739157161	-0.00888534718022955	0.98444010684578	0.994315323522068
Merged-chr9-118679038-4	chr9	118678943	118679143	+	994.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	MTD|LTR|ERVL-MaLR	-32649.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.85275729988628	5.00936167822515	4.85354961446305	4.65966378089086	5.31854109631047	5.42409110076026	5.1980422232948	4.96239715164153	0.773626939108505	0.0151625800158087	0.105685202011873
Merged-chr17-43570638-4	chr17	43570544	43570744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	2193.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	7.19992137163573	7.17183579905256	7.32824439150174	6.76648152427363	6.70947811379725	6.81686278397435	6.43345436416197	6.21904005737681	-0.781232005667455	0.00123602097142157	0.0159410648169624
Merged-chr10-118012146-4	chr10	118012065	118012265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86706.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	6.50682707443459	6.39232191020225	6.52466115280721	6.66312391784731	6.59559678047717	6.52435052249112	6.42355082270964	6.93839032881728	0.14733756574349	0.512276296657538	0.775765685590002
Merged-chr8-123406968-4	chr8	123406845	123407045	+	857.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008559)	promoter-TSS (NM_008559)	-137.0	NM_008559	17199.0	Mm.324942	NM_008559	ENSMUSG00000074037	Mc1r	Mcr1|Mshra|Tob|e	melanocortin 1 receptor	protein-coding	3.93653872594416	4.12797264890947	3.71834455118715	3.18676016671861	4.1611250467268	4.49414677287974	3.81617695943958	3.93472180953143	0.900930570640626	0.0930623327135969	0.333716294940811
Merged-chr19-12463899-4	chr19	12463805	12464005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010821, exon 2 of 2)	3' UTR (NM_010821, exon 2 of 2)	3126.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	7.15040252508475	7.27128093131961	7.31101375414058	7.22728472194484	7.09927096079701	7.09278431489801	7.03408449582592	6.70290747000534	-0.335690310847167	0.0833676116890217	0.313859828920442
Merged-chr7-99091404-4	chr7	99091314	99091514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 4 of 14)	intron (NM_178635, intron 4 of 14)	49730.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	6.23151418972818	6.34370752123435	6.85182804979491	6.34802490343881	6.04449893096603	6.12799800282336	6.25767880633857	6.14751191123697	-0.477706777621111	0.053482609561927	0.24136689487753
Merged-chr17-29093728-4	chr17	29093641	29093841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007669)	promoter-TSS (NM_007669)	-28.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	6.60525095265516	6.13393269183938	6.14811149194146	6.13375628064588	6.22380290377374	6.15017051570607	6.30551711172696	6.10208379631145	-0.0941786790179009	0.697033108376818	0.877582375893756
Merged-chr5-86100869-4	chr5	86100803	86101003	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310639, intron 7 of 7)	intron (NM_001310639, intron 7 of 7)	29157.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	4.27654498475404	4.2984750162424	4.77485410906629	4.65105250598821	3.99704397665541	4.540736623373	4.34792203814665	4.17754100436708	-0.592190827799967	0.154253491666467	0.439448040157191
Merged-chr6-21954931-4	chr6	21954826	21955026	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311061, intron 4 of 11)	MTD|LTR|ERVL-MaLR	5311.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	4.97625382770474	4.7848582560442	5.0746522970994	4.95927241044204	4.87949728205848	4.52005087061838	5.01823570538093	5.16155883228452	-0.0661741356118183	0.845515071323948	0.94153555929146
Merged-chr5-99325995-4	chr5	99325901	99326101	+	992.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-73074.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.32237502969428	4.99305964381585	5.40929044101665	5.65782728479735	5.22513958853819	5.3079583058979	5.5370924662317	4.94341516998441	-0.201677499183803	0.539826585461239	0.792406302070178
Merged-chr5-96161085-3	chr5	96160982	96161182	+	821.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144910, intron 1 of 11)	CpG	465.0	NM_001285511	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	3.68756988134847	3.8560453541631	4.10799439501067	3.74249808924775	3.79368816918133	3.49406749310938	3.61801738292708	3.98045231368258	-0.337572427983997	0.485799704484936	0.75960496387534
Merged-chr2-151001863-3	chr2	151001764	151001964	+	818.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207204, intron 1 of 23)	intron (NM_207204, intron 1 of 23)	7534.0	NM_207204	78177.0	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding	3.9847633999139	4.08836643063821	3.98535996637055	3.94469857708138	3.64848536981595	3.78645926375499	4.01363759342172	3.93521819836658	-0.430552589839439	0.330054856718359	0.641433224839941
Merged-chr12-21315830-3	chr12	21315756	21315956	+	881.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026347)	promoter-TSS (NM_026347)	-536.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	5.0872185096324	5.36997789509836	5.11645715730863	5.49714390684428	3.68463486153832	4.05694211182766	3.69239981256534	4.1094519067339	-3.54429230759925	5.50213003273872e-14	7.57516660735608e-12
Merged-chr1-156264171-4	chr1	156264068	156264268	+	971.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134741, intron 14 of 17)	ORR1F|LTR|ERVL-MaLR	39180.0	NM_001134741	214575.0	Mm.252800	NM_001134741	ENSMUSG00000060985	Tdrd5	Gm103	tudor domain containing 5	protein-coding	4.66135770091549	4.87980686337893	4.24911423646204	4.46300448977115	4.67000874072245	4.7962189460756	4.75206648096177	4.93980034995331	0.442384528358989	0.226179736856635	0.534714293609392
Merged-chr11-46793077-4	chr11	46792983	46793183	+	953.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	-17716.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	5.12249630241331	5.24970422693731	5.58173127724236	5.47898455569489	5.36100645225267	5.07842155837731	4.83387271011704	5.55355263704963	-0.242219653087167	0.461119323357369	0.742937471426379
Merged-chr7-16405762-1	chr7	16405662	16405862	+	1000.0	f0_balb.idr	intron (NM_198631, intron 1 of 13)	intron (NM_198631, intron 1 of 13)	4566.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	4.18639251483431	3.89414092328898	3.95787804325998	4.20130877928719	4.17421904117403	3.91753701659998	3.89103323467466	4.00477593241354	-0.172193388479499	0.690138459563836	0.873739201972435
Merged-chr19-45079907-3	chr19	45079832	45080032	+	794.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001362398)	TTS (NM_001362398)	3845.0	NM_001362397	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	3.44960238443054	3.54878102043531	3.13728431743277	3.43140652282186	3.37855510426579	3.72489457312822	3.32173551358169	3.60501855914296	0.367027355684759	0.487829893269092	0.761057402147961
Merged-chr4-45473339-4	chr4	45473236	45473436	+	966.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 2 of 5)	intron (NM_001033306, intron 2 of 5)	57492.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	5.15877579715442	5.12551372319641	6.10922050916227	6.31249173154611	4.91899775530147	4.80766250785624	4.87021098356332	5.04864977719588	-1.58070999559501	6.43200874369466e-05	0.00139921745222323
Merged-chr19-8953210-4	chr19	8953124	8953324	+	904.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197993)	promoter-TSS (NM_197993)	-608.0	NM_197993	70044.0	Mm.165979	NM_197993	ENSMUSG00000071645	Tut1	2700038E08Rik|PAPD2|Rbm21|TUTase6|U6-TUTase|star-PAP	terminal uridylyl transferase 1, U6 snRNA-specific	protein-coding	4.70925772223905	4.53881765960553	4.85419878847982	4.57721836355037	4.39807864451936	4.8056111425213	4.64938787160653	5.01033285353308	0.123510806303165	0.735978590022657	0.895751244963882
Merged-chr2-70509389-2	chr2	70509280	70509480	+	869.25	f0_balb.idr|f1_balb.idr	exon (NM_025744, exon 1 of 13)	exon (NM_025744, exon 1 of 13)	561.0	NM_025744	66748.0	Mm.423014	NM_025744	ENSMUSG00000075302	Erich2	4933404M02Rik	glutamate rich 2	protein-coding	4.27710111018753	4.12680216847262	4.62521306796846	4.20612878507261	3.80225512082274	3.73161647878708	3.83837588565926	3.67375387976703	-1.52049981618634	0.000936295800169895	0.0127525064600637
Merged-chr12-3871877-4	chr12	3871769	3871969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-9625.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	5.4653959184	5.3846854530338	5.67374775711987	5.47763180271857	5.59462340734554	5.49318798948804	5.64492104395378	5.14451095897147	-0.0200805112122036	0.943922798433044	0.979866422670424
Merged-chr5-77245676-4	chr5	77245555	77245755	+	828.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19839.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	3.61645239581008	3.38477529071562	3.19876991615401	3.41884242753661	3.88166284826806	3.44608601450332	3.65140361125506	3.66490362633848	0.850960182752387	0.0945578026685956	0.336425564138157
Merged-chr2-35232913-4	chr2	35232836	35233036	+	947.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-23423.0	NM_001206367	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	4.35028066715191	4.01324994764993	4.22686539072515	4.16963426419942	4.11540494038907	4.16364582595898	4.07200620257751	4.13432779307564	-0.179195604126962	0.656225198092585	0.856566968788984
Merged-chr6-39120303-4	chr6	39120166	39120366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045813, intron 1 of 3)	RMER16|LTR|ERVK	1793.0	NR_045813	75379.0	Mm.348014	NR_045813	ENSMUSG00000073144	4930599N23Rik	-	RIKEN cDNA 4930599N23 gene	ncRNA	5.99576962860845	5.84224866421255	5.97601442415639	5.63734662745736	5.77049619801026	5.84488162751268	5.92441597529368	5.63748639912335	-0.0919927584445576	0.722988606838683	0.889323714204725
Merged-chr4-8857649-3	chr4	8857522	8857722	+	919.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 31 of 36)	intron (NM_001355382, intron 31 of 36)	106298.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	3.14887610042916	3.13163203834404	3.30980515573718	3.01804774773308	3.82622904297082	4.40940497013859	4.58203399698161	4.51289616767616	3.77013830224859	4.8095007210687e-11	3.86819719576213e-09
Merged-chr12-85599706-4	chr12	85599599	85599799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205053)	promoter-TSS (NM_001205053)	283.0	NM_030887	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	7.30767170635052	7.92057174171467	7.30893275605229	6.75963061899488	7.6814047846014	7.79122074527275	7.90113836941223	7.24873592967214	0.384604003059435	0.153110340932589	0.437555330104179
Merged-chr14-63443622-5	chr14	63443549	63443749	+	918.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177628, intron 2 of 3)	intron (NM_177628, intron 2 of 3)	7255.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	4.64746020451446	4.3387541213155	4.78838039531927	4.41742382992257	4.38201835999569	4.33863204076976	4.55046058893159	4.68162369565255	-0.125641049045068	0.740035215140135	0.897683586969888
Merged-chr11-46834008-1	chr11	46833908	46834108	+	1000.0	f1_balb.idr	intron (NM_178759, intron 5 of 8)	B4A|SINE|B4	23209.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	3.06632600901509	3.2100766182656	3.2024464134067	3.29890660923269	3.43459278551241	3.31590520464782	3.90531074915635	3.43672814766913	1.16131034119318	0.0355816493560493	0.187299676047495
Merged-chr1-154031047-3	chr1	154030945	154031145	+	861.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131116.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	3.63108679177139	3.44747927219448	3.52546952426128	3.40775864216098	3.85300207190977	3.64141827095501	3.45604289478712	3.46713560818483	0.404634000922326	0.415122168784684	0.709504359241972
Merged-chr18-75924934-3	chr18	75924845	75925045	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	104767.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	3.55869121997947	3.5746317430485	3.71576414310312	3.05464762773613	5.5985840479984	5.30899191618812	5.13102903569424	5.2583563828162	4.88034793047213	1.006060861608e-26	7.95671178537735e-24
Merged-chr11-50841583-4	chr11	50841496	50841696	+	991.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290779)	promoter-TSS (NM_001290779)	-44.0	NM_173387	214779.0	Mm.191846	NM_173387	ENSMUSG00000044296	Zfp879	Znf879	zinc finger protein 879	protein-coding	5.61040318558008	5.14979285342806	5.36972728989934	5.80775848865208	5.15375248923494	5.48436555635231	5.31328928849957	5.30544485386997	-0.375460642831069	0.227786429943411	0.536465946363434
Merged-chr10-7211090-2	chr10	7210990	7211190	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172546, intron 1 of 12)	intron (NM_172546, intron 1 of 12)	1147.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	3.86761351940997	3.52498920309934	4.13502951570357	3.73493116844351	3.81517560686321	3.71311625491404	3.51932982799402	4.2467017478401	0.0658549704477056	0.897268230771951	0.961615505271572
Merged-chr16-90187672-4	chr16	90187569	90187769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33073.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	6.37995622459352	6.41738307370379	6.68077096799831	6.194813386773	6.53023928245289	6.48409662887679	6.45051598249414	6.05368228780797	-0.029250588319517	0.903803690703325	0.964379728077172
Merged-chr14-64901236-3	chr14	64901150	64901350	+	590.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 2 of 9)	intron (NM_177338, intron 2 of 9)	48607.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	2.74305867799319	2.80509420621556	2.74330356324331	2.87446758150189	3.09477945649901	3.57193401967642	3.29305689384466	3.19981357782597	2.01056985284859	0.00141875574342305	0.017858198014045
Merged-chr12-102442036-2	chr12	102441936	102442136	+	977.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2223.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	3.00140857413493	3.14664670571703	3.37083475788387	3.07331128771853	3.63777498777988	3.2479071403338	3.30309380184109	3.36891246873317	0.933143020923823	0.0896939973777448	0.327015778279491
Merged-chr15-57694582-4	chr15	57694490	57694690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199449)	promoter-TSS (NM_199449)	-77.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	6.29400243241307	6.63589351226939	5.96900443636826	6.29707087434529	6.81405242049812	6.52774649702027	6.44051200185892	6.36503949087321	0.342816683739348	0.167937487283592	0.459915036621355
Merged-chr11-98342764-4	chr11	98342668	98342868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5638.0	NM_144828	19049.0	Mm.45372	NM_144828	ENSMUSG00000061718	Ppp1r1b	AU040756|DARPP-32|Darpp32	protein phosphatase 1, regulatory (inhibitor) subunit 1B	protein-coding	6.51725326132249	6.45605794706367	5.57328246879692	5.97027942102071	6.24436623635501	6.32834025232397	6.05882618511389	6.30010413958744	0.086294488451982	0.763287161680773	0.90713960302321
Merged-chr5-142747444-2	chr5	142747344	142747544	+	770.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122730, intron 16 of 27)	L1M5|LINE|L1	45343.0	NM_146257	243328.0	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	3.88924462983697	3.47908501750614	3.28486400120337	3.2778753474624	3.45205331700671	3.52319762737996	3.33558693735667	3.51771176941256	-0.134050470341423	0.803439358885812	0.924122552203287
Merged-chr5-88543076-4	chr5	88542967	88543167	+	831.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-11395.0	NM_023054	65961.0	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl-1|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	4.32688170023029	4.3027440354911	4.18497052607755	4.34073247247143	4.24443284955153	4.45619538098519	4.65639197662545	4.60602562410162	0.461959906884144	0.225255615906722	0.533604905018683
Merged-chr2-27075673-3	chr2	27075573	27075773	+	985.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3512.0	NM_025376	66139.0	Mm.330087	NM_025376	ENSMUSG00000009214	Mymk	1110002H13Rik|AI131587|Tmem8c|myomaker	myomaker, myoblast fusion factor	protein-coding	4.55449250738409	4.52586849633356	4.80443132081698	4.68522690511856	4.16882679353344	4.26801851789085	4.5723650505503	4.33875807448596	-0.709972681200909	0.060089281338079	0.258734805779401
Merged-chr2-170319360-4	chr2	170319277	170319477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36984.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	7.04661342552452	7.07365212286903	6.6697203727486	7.2168554279334	7.43655310313588	7.27444495141782	7.51984486710335	7.43819957563973	0.528573703098051	0.00887270299995642	0.0724088657227583
Merged-chr10-36974489-4	chr10	36974394	36974594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008229)	promoter-TSS (NM_008229)	-50.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	7.30411444721048	7.06528613952361	7.30537262232139	7.30755032708545	7.24531849504435	7.57353700334181	7.48058140326832	7.54750050575245	0.282036356867872	0.131349415778673	0.403474886315821
Merged-chr17-25920042-4	chr17	25919946	25920146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139154)	promoter-TSS (NM_139154)	-332.0	NM_139154	224624.0	Mm.328872	NM_139154	ENSMUSG00000025730	Rab40c	RAR3	Rab40C, member RAS oncogene family	protein-coding	9.3481144513828	9.4450093107352	9.26266655256159	9.14298079828848	9.31515527373218	9.51366373572632	9.38758040408762	9.32414601582597	0.103822567184557	0.476708214522148	0.753110052062842
Merged-chr16-35754108-4	chr16	35754007	35754207	+	622.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	intron (NM_153550, intron 1 of 8)	15249.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	3.50014727644526	3.80496777544784	3.7297898684629	3.89737804154715	3.78197607456556	3.79370177403353	3.95085834357622	3.67414425839498	0.146174263479864	0.755105976810978	0.903608318762915
Merged-chr13-20090603-4	chr13	20090454	20090654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080288)	promoter-TSS (NM_080288)	47.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.92529390935645	6.22339393303692	5.74904201608234	5.91801999436188	6.2519952567028	6.46740576070351	6.00853681539654	6.2709863067319	0.448424660969321	0.0717034048749398	0.287646512054419
Merged-chr13-58688427-4	chr13	58688340	58688540	+	991.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73871.0	NR_045469	67585.0	Mm.84751	NR_045469	ENSMUSG00000114384	4930455J16Rik	-	RIKEN cDNA 4930455J16 gene	ncRNA	4.9797795745125	4.75945017521827	5.01471892589294	5.25515433121972	5.16447251583839	4.84779972250737	4.95665239222691	4.97725860891132	-0.0590040434568329	0.858880079992103	0.946576014812915
Merged-chr2-75985247-4	chr2	75985124	75985324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3257.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	5.8426739071106	5.79265306651982	5.77044030268593	5.69959888758834	6.03837254933944	6.042142845468	6.0100498070168	5.90873760899505	0.373556396309774	0.117789833767446	0.379631540762192
Merged-chr7-118798384-4	chr7	118798239	118798439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 19 of 30)	RSINE1|SINE|B4	57274.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	6.07337147309267	6.19666446095256	6.38332684167716	5.75977126132371	6.02917959501169	5.97684187433455	5.66384523558935	6.13040663788306	-0.226490317801095	0.404850126167545	0.701907858494207
Merged-chr5-29258542-4	chr5	29258456	29258656	+	929.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020295, intron 11 of 16)	intron (NM_020295, intron 11 of 16)	62563.0	NR_110371	56874.0	Mm.87352	NM_021470	ENSMUSG00000029130	Rnf32	1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2	ring finger protein 32	protein-coding	4.74673054181219	5.09561015088023	4.57524683812083	4.86501410018488	4.78020825851772	4.70976731230937	5.26930753730703	5.21158219294507	0.342505805978086	0.338008470838418	0.647718939249696
Merged-chr2-104996515-3	chr2	104996422	104996622	+	801.477783	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177600, intron 17 of 17)	intron (NM_177600, intron 17 of 17)	20505.0	NM_145380	98221.0	Mm.379278	NM_145380	ENSMUSG00000027170	Eif3m	Ga17|Pcid1|Tango7	eukaryotic translation initiation factor 3, subunit M	protein-coding	3.46526540841323	3.5012830208942	3.52547688044899	3.45185593433325	3.99360105844524	3.45309356664196	3.56860127372077	4.1194951846533	1.02363265107427	0.0417383897793084	0.206908731460332
Merged-chr17-71662791-4	chr17	71662712	71662912	+	944.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10449.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	4.73120921272737	5.10165464404015	4.44275579476927	4.60215589527174	4.58565227980512	4.70751754505352	4.70948468502804	4.44002501942492	-0.273729334401901	0.463709331992286	0.744976486222937
Merged-chr4-86689513-4	chr4	86689403	86689603	+	793.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19444.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	4.26770253815745	4.85572356781592	4.98757121385746	5.14646607627657	4.18665255164958	4.23627265675457	4.14603044172716	4.45392518447425	-1.3707391668401	0.000984891334277638	0.0132746790915637
Merged-chr3-137947733-4	chr3	137947653	137947853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	29198.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	6.52478025276473	6.77886572192537	6.66693686732275	6.6731599000579	6.6450415327119	6.56299332840763	6.70457856201005	6.04410940264771	-0.21248052315396	0.363810635303658	0.668833841539305
Merged-chr18-82567830-4	chr18	82567727	82567927	+	807.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025251, intron 2 of 6)	intron (NM_001025251, intron 2 of 6)	13319.0	NM_001025254	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	4.30037161113916	4.27051452725973	4.42519005244955	4.19616738751324	4.13276463363757	4.33745451796613	4.14581035692489	4.38231679958269	-0.107476768885141	0.783112841095891	0.915496954483708
Merged-chr4-42877076-4	chr4	42876967	42877167	+	858.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2833.0	NM_177785	277773.0	Mm.212727	NM_177785	ENSMUSG00000050141	Fam205c	4931430D02|FAM205CP	family with sequence similarity 205, member C	protein-coding	4.15495369391752	4.39352519506967	3.92830398738762	4.48075199133552	4.96205313780544	4.33484580647828	4.53627668927694	4.62921991001143	0.840152816265564	0.0468518972842115	0.22251943510687
Merged-chr4-62329109-3	chr4	62329005	62329205	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 13 of 27)	intron (NM_001355385, intron 13 of 27)	31491.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	4.82365030058174	4.74502289157364	4.74638552104303	4.87019156801356	5.19114258529789	5.20449408285317	4.68389224580945	4.96420686368346	0.456366110219977	0.170094233550556	0.46307659016619
Merged-chr8-70544280-4	chr8	70544180	70544380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	4605.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	8.29941176412755	8.28415207240433	8.11607120659174	8.18044372275597	7.85374229878391	7.91948673275753	7.9536385434575	7.78586344053641	-0.44062768422608	0.00518900167024893	0.0488426275967533
Merged-chr7-99090725-4	chr7	99090627	99090827	+	668.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 4 of 14)	intron (NM_178635, intron 4 of 14)	50417.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	4.12124125483231	3.52654392098521	4.24821328653252	3.73542390742484	4.11141590791499	3.88957176400938	3.96452175813373	4.32294492148051	0.411120090686485	0.391894152198361	0.691574667597334
Merged-chr14-33160487-2	chr14	33160387	33160587	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 2 of 58)	intron (NM_001146022, intron 2 of 58)	24579.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	3.03441758336402	3.41228877170656	3.10418187684108	3.14248985513172	3.25531689253807	3.52193514383554	3.54251482895505	3.50754363266534	0.979282808622651	0.0710923929189332	0.285968256816404
Merged-chr12-110706396-4	chr12	110706291	110706491	+	826.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-9996.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	4.08744464566375	3.83741012348653	4.13265986370692	3.78357595440909	3.9806654544039	3.95992669626743	4.15662925298231	4.13005695731511	0.279870251214505	0.514510389770062	0.777082308467222
Merged-chr5-108669238-4	chr5	108669147	108669347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_174870)	TTS (NM_174870)	5549.0	NM_001310692	231583.0	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	7.23820655640089	7.17468260835147	7.25023302080769	6.99956317955169	7.17489251213125	7.61553107740287	7.33609491933891	7.03554004454809	0.193233930824053	0.346376073071019	0.654667431081974
Merged-chr17-69384030-11	chr17	69383933	69384133	+	999.4545289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009547, exon 1 of 3)	5' UTR (NM_009547, exon 1 of 3)	229.0	NM_009547	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	5.53605250916686	5.39616475431262	5.90233333054221	5.4955636953457	5.40568688947328	5.54269633512381	4.91695955493649	5.47896727572594	-0.404375784742181	0.192522860758447	0.492157893412656
Merged-chr4-48043429-4	chr4	48043253	48043453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1952.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	9.24342815765818	9.14661602065429	9.37630781264929	9.19332736399704	9.22979555373118	9.34497929751311	9.44213873039383	9.26898645901658	0.101007646849902	0.476607799708505	0.753093932967774
Merged-chr2-160058345-4	chr2	160058245	160058445	+	931.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	41692.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	4.45991769389412	4.72526936862987	4.31899184580202	4.66351702104699	5.06568990639031	4.63559599645621	4.95414932269775	4.70592163282879	0.635418649866775	0.0805312001946302	0.3077984373438
Merged-chr11-118449250-4	chr11	118449117	118449317	+	875.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001204129, exon 4 of 4)	3' UTR (NM_001204129, exon 4 of 4)	5683.0	NM_001204130	56745.0	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	4.07340376255384	3.99261171498943	4.2071854238146	3.92755580184346	4.17156238839617	3.99323973915813	4.22901260024322	3.86965491049682	0.0910954678471263	0.829449517929883	0.934551281935698
Merged-chr11-119355471-4	chr11	119355378	119355578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018822)	promoter-TSS (NM_018822)	32.0	NM_018822	27029.0	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	5.74050817148553	5.8140475589195	6.49356719808384	5.27879903553698	5.95267808886819	6.0439060640478	5.92841402173707	6.33495561350782	0.279764707251159	0.394853910279187	0.693825698346514
Merged-chr14-75136857-4	chr14	75136756	75136956	+	924.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	431.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	4.40111440530853	4.44777657768305	4.36062219297923	4.31306017062968	4.37379591444894	4.09610002194845	4.34086958870274	4.07869449145358	-0.338081295659551	0.387994227590013	0.688790151530853
Merged-chr2-91196918-4	chr2	91196807	91197007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1791.0	NM_001177730	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	8.28745533193108	8.69600903308355	8.50777663202423	8.1759638732887	8.34901691082854	8.37180874468192	8.31636914368524	8.26036655066783	-0.130682229303026	0.45659962309914	0.739948846451796
Merged-chr11-30026095-4	chr11	30025974	30026174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146016)	promoter-TSS (NM_146016)	-41.0	NM_146016	237711.0	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	8.82610201773443	9.11989652917477	9.03038118466726	9.17165409414674	8.95078563094266	9.11472315414799	9.15849085379	8.9644166289765	0.000768118957442098	0.996009375030176	0.998543856884531
Merged-chr3-69674374-4	chr3	69674289	69674489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47666.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	5.19638675859871	4.99302203760576	5.19726414985267	5.41891395302695	5.65968382575695	5.30611292310275	5.72754143161431	5.43691827194375	0.570232255276521	0.0577196038964087	0.252174299394947
Merged-chr6-113650288-4	chr6	113650178	113650378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	11811.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	6.4873534869132	6.18036856264771	6.35986359971915	6.37571694342301	6.04748701687728	5.77243206371907	6.02343929326067	5.88914953652199	-0.629900077108622	0.00775897632164669	0.0657158704900631
Merged-chr11-6490311-4	chr11	6490186	6490386	+	981.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14210.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	5.31792583372635	5.32236601027309	5.31883640701415	5.28454062772867	5.30912974201394	5.2341105436418	5.37740937584348	5.15847906532981	-0.0609764555886531	0.82923086665119	0.934397133080848
Merged-chr13-59585213-4	chr13	59585124	59585324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045633)	promoter-TSS (NR_045633)	-1.0	NR_045633	319469.0	Mm.437992	NR_045633	ENSMUSG00000021557	A230056J06Rik	-	RIKEN cDNA A230056J06 gene	ncRNA	8.29442795493826	8.54771479334691	8.30706734958916	8.01782847503573	8.61258696254848	8.53447642617023	8.46013995453296	8.23821652956788	0.216466943474723	0.234308501447584	0.544174002366796
Merged-chr8-110619891-4	chr8	110619790	110619990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151675, intron 1 of 17)	MER3|DNA|hAT-Charlie	1323.0	NR_151675	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	5.78914447028667	6.0708559151901	6.00177084949165	6.43222570265667	6.04989934608117	5.65423097726141	6.11338193962626	5.90784226012514	-0.26085683608162	0.34293581895158	0.6516462545027
Merged-chr3-130796691-4	chr3	130796592	130796792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66294.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	5.5125957164687	5.85770964374241	5.90544630064726	6.18067403736852	5.70177712795715	5.91352281332085	5.85280068978809	6.0292340517544	-0.0522491907295743	0.849819028840963	0.943287725008123
Merged-chr15-41685753-4	chr15	41685634	41685834	+	996.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-103261.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	5.64284091948004	5.79733530255567	5.48153043513749	6.19990090212455	5.33722189081387	5.40699379965758	5.48239296301945	5.32482256280148	-0.758458804572344	0.0116072780243011	0.087752994422913
Merged-chr19-41402768-4	chr19	41402665	41402865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17695.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	7.50704428647261	7.46454939737096	7.32959288630554	7.25229155709885	7.20078973320528	7.15987384492969	7.22043847646121	6.88022034655332	-0.353294092875578	0.0643615933255446	0.269604204840032
Merged-chr11-83020867-4	chr11	83020785	83020985	+	963.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167743)	promoter-TSS (NM_001167743)	-75.0	NM_181545	276950.0	Mm.491599	NM_181545	ENSMUSG00000035208	Slfn8	-	schlafen 8	protein-coding	4.92020498782551	4.90075028821693	4.38172402219806	4.83602088962294	5.08065256283204	4.87438476518704	4.55203034374906	4.98361456487577	0.227493041760944	0.5286159416458	0.785158259471775
Merged-chr1-36072110-4	chr1	36072018	36072218	+	991.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	3718.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	6.13759179246083	6.68879124063255	6.50561975254353	5.98680068223504	6.13447631296067	6.27388414616737	5.83838780183479	5.58560849582627	-0.561888490849526	0.0546672980754491	0.244137656563039
Merged-chr15-83016209-3	chr15	83016108	83016308	+	957.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028728, intron 2 of 5)	intron (NM_028728, intron 2 of 5)	6930.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	3.60548569365798	3.65585097301842	3.91718560878673	3.15763019798668	4.74609104498306	4.80338740088684	4.28222655201326	4.30043106445735	2.59945292502841	7.16557579974129e-08	3.16234916794305e-06
Merged-chr9-44767328-1	chr9	44767228	44767428	+	1000.0	f0_balb.idr	intron (NM_145985, intron 1 of 9)	CpG	480.0	NM_145985	213827.0	Mm.371682	NM_145985	ENSMUSG00000032096	Arcn1	4632432M07Rik|nur17	archain 1	protein-coding	5.13958742305403	4.81478113088764	5.07465973427956	5.19542754155072	4.83334424143166	5.28176025808366	5.11517850026376	5.44742604337974	0.204443883659038	0.536508725246396	0.790448637073878
Merged-chr2-120481705-4	chr2	120481604	120481804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109761, intron 2 of 20)	intron (NM_001109761, intron 2 of 20)	4795.0	NM_001109761	12335.0	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	5.45552781814495	5.72060702777416	5.79486150318701	5.67091806191903	4.97098809710228	5.13552586992297	5.15323287747117	5.3058577536394	-0.947399507167441	0.00104243159691753	0.0139027990700754
Merged-chr1-118388243-4	chr1	118388163	118388363	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359346)	promoter-TSS (NM_001359346)	-795.0	NM_001359329	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	5.18591524687899	5.1976354962771	5.45128288033628	5.14472199003742	5.50785287404879	5.11418522039574	5.47535046854104	5.11623796107953	0.156805242054699	0.605262561786258	0.828754691547092
Merged-chr11-11903643-4	chr11	11903535	11903735	+	898.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-5491.0	NM_001190448	13195.0	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	4.59087178231599	4.51375958269761	4.91217346275535	4.15542886680356	5.00284146846953	4.93993085309028	5.37772838053174	5.40192799624501	1.30058867787476	0.000439713979221588	0.00694439789816139
Merged-chr3-15243898-7	chr3	15243796	15243996	+	999.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88406.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	5.37231367396243	4.97382075979013	6.09610889007411	6.30349565932814	5.10818141717173	4.83299697911998	5.22273606040543	4.82824772743074	-1.39495441911789	0.000477259068214548	0.00744158230371158
Merged-chr16-85286602-3	chr16	85286516	85286716	+	823.027771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112909.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	2.39527598031867	2.34488833164571	2.39546236155829	2.17170971802386	3.32032802834353	3.07875057195342	2.94798203201885	3.1226439223283	5.1438114579618	4.30257824037043e-09	2.45198732242856e-07
Merged-chr2-157501547-4	chr2	157501440	157501640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58538.0	NM_001291129	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	6.96450262150311	6.84713366021833	6.65786957844844	6.7956401458407	6.69135527285987	7.24829936544788	6.68552768872862	6.81636961176339	0.0759833710908027	0.731944093514484	0.893842682027583
Merged-chr4-136881156-2	chr4	136881056	136881256	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009777, intron 2 of 2)	intron (NM_009777, intron 2 of 2)	5021.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	2.64635176030497	2.49070913334092	2.52606657009911	2.05926206997137	2.45814638174264	2.42582262930306	2.38544724254217	2.39201863256697	-0.178803209187306	0.82010671286167	0.931144434046049
Merged-chr17-71264952-4	chr17	71264822	71265022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	46089.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	7.48337872972568	7.76674999183714	7.69441591607923	7.85673437768546	6.47114419210686	6.63845831944892	6.49956140447863	6.56519039981943	-1.61592223639108	1.07065807808945e-16	2.26810628989073e-14
Merged-chr1-144243171-2	chr1	144243071	144243271	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5933.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	4.69455145618993	4.55160880233249	4.86367562254901	4.42145690611275	4.47879779468958	4.63240743352538	4.48029400771621	4.16537930400282	-0.405709710677481	0.290019880659289	0.602144651443792
Merged-chr5-30916266-4	chr5	30916146	30916346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133918, intron 3 of 7)	intron (NM_133918, intron 3 of 7)	2460.0	NM_133918	100952.0	Mm.286375	NM_133918	ENSMUSG00000029163	Emilin1	5830419M17Rik|AW229038|BB105748|EMILIN-1|gp115	elastin microfibril interfacer 1	protein-coding	8.49835089828491	8.52903246541042	8.56628542781382	8.59557873372341	8.24502003228991	8.30434760104322	8.49409398993192	8.51840072573493	-0.197669295129219	0.198315141012114	0.499800779736617
Merged-chr2-52993408-4	chr2	52993318	52993518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	135550.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	6.78224329193204	6.46323547743349	6.70121491280572	6.76249434355094	6.39334915906531	6.22682963514729	6.5331551601468	6.15638163404464	-0.50588712277286	0.0235295486246036	0.142440018842547
Merged-chr8-104176111-4	chr8	104176030	104176230	+	975.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141925, intron 1 of 4)	intron (NM_001141925, intron 1 of 4)	5617.0	NM_001141925	65115.0	Mm.41849	NM_001141922	ENSMUSG00000031872	Bean1	Bean	brain expressed, associated with Nedd4, 1	protein-coding	4.71502791409159	5.50316456615987	4.79874958344659	5.07794072640531	4.82472679911779	5.01479596024816	5.15298386587235	4.94700624372166	-0.161326422143614	0.65043716656136	0.853294802585927
Merged-chr14-54448118-3	chr14	54448018	54448218	+	918.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-16029.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	3.70851608754841	4.0069053809947	3.70900613959325	3.4334050405285	4.2219830230725	3.94260151024926	4.12978219215041	4.0610406882017	1.06018087242014	0.0209787454476683	0.132260794358767
Merged-chr16-87594289-3	chr16	87594195	87594395	+	891.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144854, exon 5 of 5)	exon (NM_144854, exon 5 of 5)	40965.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	4.33605518368328	4.47989672517657	4.96980968672213	5.01182309350859	4.14812525299901	3.90555918119711	4.31723597655046	4.08420060265911	-1.45765598579583	0.000777701461839972	0.010983335784188
Merged-chr6-86487973-4	chr6	86487858	86488058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040292, exon 1 of 2)	non-coding (NR_040292, exon 1 of 2)	269.0	NR_040293	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	5.17603029529996	5.35602069215805	5.84739398198287	5.25396774721301	5.35415578741368	5.51856318009599	5.70956955380572	5.56525894939246	0.196821528065801	0.518794011579767	0.779745431679921
Merged-chr9-65195760-4	chr9	65195656	65195856	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18934.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	5.83852129594871	5.35346239108054	6.12249529182178	5.965262159064	5.16056870949048	5.38963794948568	5.83193851492018	5.98471909797628	-0.36647885023497	0.268473101422527	0.580131084080006
Merged-chr17-83395543-4	chr17	83395449	83395649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357886, intron 1 of 21)	MTEa|LTR|ERVL-MaLR	44618.0	NM_001357886	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	5.09568302329281	5.29059599755405	5.23410980658893	5.48841560725284	5.25596909577328	5.56136626488011	5.68722096858338	5.38387077766883	0.304797416404193	0.309263747105022	0.621622697166796
Merged-chr15-79756556-3	chr15	79756455	79756655	+	798.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045069, exon 4 of 4)	non-coding (NR_045069, exon 4 of 4)	13857.0	NR_045069	100504191.0	Mm.421420	NR_045069	ENSMUSG00000087543	Gm16576	-	predicted gene 16576	ncRNA	3.37255158379407	2.99593373383983	3.46831828148818	3.28101867794966	3.03053427497707	3.14492634143019	2.89102095030924	2.8980115668889	-1.18907853065593	0.0507288908746197	0.233529409103904
Merged-chr5-64764621-3	chr5	64764516	64764716	+	743.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38907.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	3.38839453640291	3.50137455521	3.43932135577965	3.23607898197569	3.02058000466608	3.07612134629704	2.95836554547051	3.1628716192355	-1.33527754743173	0.0210902821875929	0.132648687446379
Merged-chr4-148677166-2	chr4	148677066	148677266	+	690.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33849.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	3.60511523826768	3.06375164895822	3.39971286615975	3.23854098789309	3.50295583932203	3.45681885961143	3.44037850710785	3.34085476283744	0.363945907792788	0.496655753744646	0.766593513949695
Merged-chr9-113782818-4	chr9	113782719	113782919	+	930.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 6 of 39)	L1MB8|LINE|L1	-10511.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	5.25485399584299	4.84895985558571	4.91306426763579	4.97827178979986	4.9190577145488	4.76956220571905	4.52274849382705	5.25206308645181	-0.216270038185178	0.54120535455856	0.793100056248944
Merged-chr10-80623735-4	chr10	80623646	80623846	+	930.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134002, intron 1 of 10)	intron (NM_134002, intron 1 of 10)	966.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	4.22226097130756	5.19899962145319	4.56728088479006	4.57714934915483	5.03975716913116	4.74418666527741	4.54647498612665	4.93772038720633	0.291286896808959	0.476756655132012	0.753110052062842
Merged-chr2-30772092-4	chr2	30772030	30772230	+	939.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29607.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	4.89901998163362	4.58502846261231	4.56114384767583	4.6914952128182	4.65105165184762	4.89521206993034	4.582472149626	4.86307267696255	0.126101583106269	0.715712057210959	0.886371710249844
Merged-chr7-4238136-3	chr7	4238038	4238238	+	954.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081239, exon 3 of 6)	exon (NM_001081239, exon 3 of 6)	384.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	4.29326142835396	4.75789484931396	4.4131360526847	4.05466699204099	3.72013518453329	3.97632154286089	3.65203683476206	4.11292992474007	-1.3884789164744	0.00348182339413397	0.0359177836769655
Merged-chr7-142340748-4	chr7	142340640	142340840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177265, intron 3 of 3)	intron (NM_177265, intron 3 of 3)	31519.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	6.26520672067989	6.54398392504527	6.39769818010141	6.05748794990144	6.77158970962971	6.6761223554888	6.6909588089417	6.18021783572149	0.42164276822745	0.0878300627794718	0.323284604703178
Merged-chr13-37290904-4	chr13	37290792	37290992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54453.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.47434756497906	5.36682262378265	5.32930443206165	5.42801995538636	5.34292652799352	5.37644041423706	5.52740439151733	5.69777994685422	0.150543218667363	0.587978004147645	0.819445784289058
Merged-chr6-124911735-3	chr6	124911654	124911854	+	738.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008479)	promoter-TSS (NM_008479)	-49.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	3.33821852527152	3.26752055034247	3.28231582504232	3.53780578592117	3.14830769560751	3.33437321861822	3.15128986029093	3.33686042556517	-0.477938896912991	0.378123594688945	0.680729094848376
Merged-chr17-87550844-4	chr17	87550731	87550931	+	871.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85148.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	4.5538428358472	4.23920011843955	5.05869338916019	5.28723999752036	4.04760368589977	4.35925509471654	4.40446439819317	4.50971712541669	-1.15533160725608	0.00940213611883725	0.0755514390158858
Merged-chr14-44990656-3	chr14	44990540	44990740	+	674.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008964, intron 1 of 1)	intron (NM_008964, intron 1 of 1)	2529.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	3.51720907977713	3.52999715126318	3.51768401624345	3.34896430344873	3.52956761928139	3.84288657675562	3.6591847358713	3.39945170972374	0.460763956273479	0.351244372115553	0.658672265005478
Merged-chr16-17492369-4	chr16	17492259	17492459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291070, intron 1 of 19)	intron (NM_001291070, intron 1 of 19)	438.0	NM_001291070	72168.0	Mm.40038	NM_175178	ENSMUSG00000022763	Aifm3	2810401C16Rik|AI840249|Aifl	apoptosis-inducing factor, mitochondrion-associated 3	protein-coding	5.07750349100836	5.45976773322246	5.24925529472646	5.31185373838656	5.35665093537364	5.39223313115264	5.74164521676371	5.65670184611435	0.45213164063899	0.121086192401299	0.385352503305557
Merged-chr13-42328739-4	chr13	42328641	42328841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27265.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	7.60045320597034	7.29696991039134	7.90413281113163	7.46983406944467	7.30438578737379	7.88822348880886	7.78068622928267	7.93942526829402	0.214336307697302	0.332032781403668	0.64308845362041
Merged-chr12-87386090-4	chr12	87386046	87386246	+	877.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011479, intron 1 of 11)	intron (NM_011479, intron 1 of 11)	2209.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	3.46523022595684	3.55079991406637	3.56816872215911	3.35892307246441	3.2122978668327	3.34496352762149	3.15738029958501	3.51591990673493	-0.608242882770601	0.2523546507009	0.563645884616847
Merged-chr6-8412978-4	chr6	8412870	8413070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302353, intron 4 of 4)	intron (NM_001302353, intron 4 of 4)	96191.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	6.96745150796312	7.03392950934716	7.04064987377118	7.63292227376079	6.5256366156294	6.23088304359943	6.62844102471736	6.37718566765484	-1.07469714657625	1.19088473245781e-05	0.000322549407806752
Merged-chr2-173083872-3	chr2	173083764	173083964	+	792.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	35661.0	NM_001081387	664799.0	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris	CCCTC-binding factor (zinc finger protein)-like	protein-coding	3.39720104628503	3.27206212638515	3.39767455922887	3.40775358504047	3.28114021318854	2.9121954883192	3.38398309627528	3.39575955720559	-0.402930125945327	0.474711554802032	0.751855589262771
Merged-chr14-51098484-3	chr14	51098384	51098584	+	810.833313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_201239, intron 1 of 1)	intron (NM_201239, intron 1 of 1)	2484.0	NM_201239	58809.0	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	3.4840278328917	3.73374033579171	3.55007572471382	3.67192074387618	4.38441560085893	4.32451649921019	3.92017295282337	3.72800531863217	1.3983762651153	0.00382556536848531	0.0386798560378567
Merged-chr14-70769720-4	chr14	70769603	70769803	+	863.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3075.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	4.14395556757758	4.06363631912449	4.04187629083287	3.97342746376565	4.30319978898358	4.92641070473972	4.42996449910335	4.09177817242449	1.00837287348357	0.0172586919815122	0.115826554455219
Merged-chr8-53607274-4	chr8	53607207	53607407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146208, intron 5 of 9)	intron (NM_146208, intron 5 of 9)	31758.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	5.98034123478736	5.77653696397476	5.7478347458421	5.79035938598083	5.86072465322633	5.84569210610269	6.1823331792034	5.97712580054021	0.236807302270055	0.340245937149008	0.649355575941904
Merged-chr13-30714804-4	chr13	30714726	30714926	+	990.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34407.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	5.78601243864569	5.81148538173577	6.04596496138292	6.26775858484134	5.03721677716693	5.40811352952055	5.70891354632577	5.91891255911378	-0.742187621827106	0.0188213352898357	0.12281663225112
Merged-chr18-83830127-4	chr18	83830021	83830221	+	996.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	256441.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	5.5242839353158	5.64645921025981	5.22842187569056	5.7255809390326	5.46267439047431	5.15232109808418	5.64582066595487	5.08399527764425	-0.338355632869065	0.274216434460602	0.58594281749517
Merged-chr10-81136342-6	chr10	81136177	81136377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010731)	promoter-TSS (NM_010731)	6.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	5.77327996923449	5.54736935265516	5.90924038168279	5.56644240107966	5.49163785992286	6.01547810428698	5.64663147930986	5.79375489226965	0.0740651423892291	0.789564316782519	0.918515153062961
Merged-chr13-94382683-2	chr13	94382579	94382779	+	852.5	f0_balb.idr|f0_c57.idr	intron (NM_009680, intron 1 of 26)	intron (NM_009680, intron 1 of 26)	23719.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	3.6891543626949	3.69525606381635	4.02692705809086	3.81209241246853	3.96219176665057	3.69166321339228	3.43758485491508	3.98140473498855	-0.0532229727711938	0.913133300001612	0.967428663410909
Merged-chr19-37048781-3	chr19	37048667	37048867	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 9 of 10)	intron (NM_198300, intron 9 of 10)	122688.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	3.80113019573982	3.47305449118339	4.15135209178893	3.41744638803994	4.63274044957089	4.68814283736869	4.91583049887532	5.04588888239236	2.75942542878319	7.62764941067554e-10	5.01704096014974e-08
Merged-chr11-21009242-3	chr11	21009133	21009333	+	853.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82091.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	3.20456180934522	3.09199574387565	2.86797394804725	2.9621056959628	3.14031911140855	3.59157833078625	3.45767150385034	3.26151703800299	1.26348245547821	0.0263569978047531	0.153939833161937
Merged-chr2-76691004-4	chr2	76690907	76691107	+	969.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031256, intron 6 of 7)	intron (NM_031256, intron 6 of 7)	15692.0	NM_031256	83435.0	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	5.28987194839083	5.253995631706	5.8631560428869	6.10151238057951	5.46519717060409	5.17053801451917	6.19037277599733	5.90202886830589	0.083009636418854	0.822326361943549	0.932143478460956
Merged-chr15-50855178-4	chr15	50855071	50855271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	ORR1F|LTR|ERVL-MaLR	33878.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	6.10922192815234	5.74411426615653	5.96482608416368	6.1172314941131	5.95781526421481	6.11765072176017	5.97745675891629	5.71879762464938	-0.0781644142436712	0.757302234859744	0.904665679942472
Merged-chr12-72694102-3	chr12	72694007	72694207	+	929.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29279.0	NM_025522	66375.0	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	4.32609121715253	4.32252111708906	4.36391146006772	3.8946930205218	3.68231313529172	3.76733992174688	3.86347416504717	3.70660416450495	-1.3352954411134	0.00425696572548799	0.0421076380453737
Merged-chr19-40630270-4	chr19	40630173	40630373	+	985.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	L1M4a1|LINE|L1	17907.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	4.86498996800052	4.9255932154083	4.90633274083191	5.42889819666601	5.19102536808156	5.45805415163321	5.42428162775988	5.54808763786292	0.590393929946978	0.0780910139587564	0.302242859809423
Merged-chr6-136553955-4	chr6	136553862	136554062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	35111.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	6.76629432722195	6.48729184844682	6.3633098877696	6.51274648056781	6.86848788414565	6.6322251274257	6.85111095043362	6.48550878847224	0.270180204997507	0.219888673791422	0.527535673996415
Merged-chr3-54611761-4	chr3	54611656	54611856	+	822.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81059.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	4.82859732457802	4.12923609765857	4.43546453082871	4.59418631912734	4.44133480523065	4.22795403333475	4.18820949360634	4.55278766430829	-0.361297852004691	0.376630491686735	0.679324475274816
Merged-chr3-41564806-5	chr3	41564671	41564871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130186)	promoter-TSS (NM_001130186)	-109.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	4.41335538191941	4.37820882973064	4.75449490312066	4.47106009884108	4.23248993931342	4.58710763285483	4.43641103734823	4.41126592225114	-0.216396002601176	0.567127480035162	0.808124048747935
Merged-chr4-149791725-4	chr4	149791646	149791846	+	836.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17479.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	3.8660495302316	3.71885927712265	3.97032823974553	3.50652346791701	4.05677268702288	4.40845455744139	3.90285273138521	4.35221526731456	1.17196407056898	0.00986634224202142	0.0781348881224792
Merged-chr13-10107052-4	chr13	10106927	10107127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 3 of 4)	intron (NM_033269, intron 3 of 4)	253776.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	5.87461603441498	5.46433864017704	5.7834200434281	6.07567101834267	5.24579234737788	5.54244983032162	6.22358246284032	5.70547260252769	-0.163825956299397	0.616016172613963	0.834791340323451
Merged-chr3-116327415-4	chr3	116327283	116327483	+	909.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173553, intron 7 of 13)	intron (NM_001173553, intron 7 of 13)	26861.0	NM_001355646	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	4.17850326670517	4.22089122174265	4.08879582997599	4.52546333832697	3.89101469208364	4.00833679157105	4.02396962888457	3.70968435998779	-0.976909670864787	0.0265053738104503	0.154464221586216
Merged-chr14-31494147-4	chr14	31494058	31494258	+	876.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028932)	promoter-TSS (NM_028932)	600.0	NM_001359850	67011.0	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	5.01750359622303	4.40999285111116	4.57131786140159	3.96903625476858	5.11734341283295	4.66334908358553	4.5084118860914	4.43862582583305	0.38304797913123	0.391997469648972	0.69167049807001
Merged-chr2-167675361-2	chr2	167675261	167675461	+	830.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13554.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	3.24432645302292	3.42981460884809	3.03905825821401	2.80866708791586	3.23172998279425	3.93180229914324	3.51491324268422	3.4761505312305	1.43862187954413	0.016175864152662	0.110518509744896
Merged-chr9-13761145-3	chr9	13761039	13761239	+	780.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_024025, intron 1 of 15)	ID_B1|SINE|B4	11958.0	NM_023858	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	3.90985992898389	3.92007046357276	4.05047708932089	4.34147255422616	3.27956304108401	3.81683863946606	3.7385438256755	4.00298406362119	-0.99102220435408	0.0544151071671332	0.243534247246073
Merged-chr17-34628292-3	chr17	34628179	34628379	+	765.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302394)	promoter-TSS (NM_001302394)	0.0	NM_001302393	54397.0	Mm.373627	NM_019441	ENSMUSG00000015474	Ppt2	0610007M19Rik|AA672937	palmitoyl-protein thioesterase 2	protein-coding	3.4195003486105	3.29291261895952	3.6148181158876	3.15958913026595	3.20548030625938	3.16381557181603	3.40614887621114	3.41804475950566	-0.258222110636921	0.638524481760489	0.847180399776876
Merged-chr5-43885214-4	chr5	43885127	43885327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	16418.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	6.73288718900394	6.3330357131495	6.63306994023607	7.06159655613888	6.5439790797591	6.1339297374209	6.36997813944137	6.32390362760987	-0.5408680700292	0.0320527063455229	0.174933260617082
Merged-chr7-46999141-4	chr7	46999007	46999207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175318, intron 2 of 5)	intron (NM_175318, intron 2 of 5)	9307.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	5.90914280966603	6.20391440707722	6.05140196560973	6.2138527973118	6.40402014538433	6.43214462746591	6.38366634461094	6.42849363411923	0.448443344212273	0.0459492886058115	0.219991859744945
Merged-chr19-29368617-4	chr19	29368492	29368692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 1 of 6)	intron (NM_021893, intron 1 of 6)	1154.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	6.17387443253673	6.49914877933453	5.67113617764173	5.50548864772545	6.49814270056965	6.16855362477129	5.91726423891271	5.38681701782568	0.0611027315024708	0.864068985028421	0.948953377234741
Merged-chr18-82855827-4	chr18	82855725	82855925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_125720)	promoter-TSS (NR_125720)	-72.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	6.49267241889311	6.4303488342183	6.80527185476741	7.00054322086977	6.69891427318853	6.83577884964786	6.79784856353682	6.8675228708235	0.111185904804286	0.625782655781351	0.840098340545957
Merged-chr1-93071579-4	chr1	93071489	93071689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294150, intron 9 of 46)	intron (NM_001294150, intron 9 of 46)	10891.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	8.55340236132675	8.84681631092987	9.05620305479493	8.66697217517903	8.64585856752842	8.9007344902773	8.60889246753503	8.56855555889299	-0.13329597858911	0.445749394331434	0.731683604435051
Merged-chr6-123049934-4	chr6	123049875	123050075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190310)	promoter-TSS (NM_001190310)	13.0	NM_001190310	69810.0	Mm.333374	NM_027218	ENSMUSG00000030147	Clec4b1	1810046I24Rik|Aplra2|Clec4b|DCAR|DCARbeta|Dcar2	C-type lectin domain family 4, member b1	protein-coding	5.73217573553124	5.72930509626782	6.12777382808088	6.20504837311417	5.43092110568459	5.30253258940312	5.52167046907145	5.36445308780406	-0.954373781431753	0.000718223025317399	0.0103381995387396
Merged-chr3-89354990-4	chr3	89354895	89355095	+	880.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029974, intron 9 of 15)	MamRep564|Unknown|Unknown	-4967.0	NM_009614	11490.0	Mm.274049	NM_009614	ENSMUSG00000028041	Adam15	AD56|MDC15	a disintegrin and metallopeptidase domain 15 (metargidin)	protein-coding	3.99956830086881	4.29387005501572	3.89466842836389	3.91481793953065	4.23605709241504	4.4003225625198	4.12555225616801	3.89252146854631	0.372825228025084	0.387101400308946	0.688085997159096
Merged-chr11-76901792-3	chr11	76901696	76901896	+	597.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2749.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	3.04227220804236	2.97929962384495	2.92601649603981	2.95677467740268	2.68599327262855	2.83416678378094	2.9156045109763	2.98410573443246	-0.544129091889152	0.373301560874531	0.676922319351088
Merged-chr5-142551161-4	chr5	142551037	142551237	+	913.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289588)	promoter-TSS (NM_001289588)	-39.0	NM_001289588	231858.0	Mm.33766	NM_178702	ENSMUSG00000029576	Radil	AI536456|D930005D10Rik	Ras association and DIL domains	protein-coding	4.41691705219522	4.44065199374256	4.13726683032167	4.20536202590981	4.77443746806526	4.45926072020007	4.39750277190059	4.32804349654514	0.49335131270062	0.203216099184619	0.505971099783338
Merged-chr15-59003863-4	chr15	59003771	59003971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	70061.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	4.58742960191113	4.82060520239444	4.82371066708218	5.30938063705021	4.80501427337783	4.84605178744334	4.43278055788523	4.49626535704634	-0.564001011871661	0.143751052760659	0.422232602165596
Merged-chr10-22345941-3	chr10	22345839	22346039	+	910.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-15955.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	3.06935307738295	3.02082595962927	3.65527098060473	3.27372366379955	2.93164448244463	2.97884164212321	2.86146703600477	3.00485242979804	-1.37011118891141	0.029437032434059	0.165166209335006
Merged-chr15-73645771-4	chr15	73645677	73645877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-21033.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	7.532832573668	7.71707876548892	7.27376530422101	7.35296503043414	7.56679073457897	7.4513958683678	7.8276270649037	7.44481953149463	0.13904412109728	0.478473563992673	0.754537308566746
Merged-chr7-27674622-4	chr7	27674562	27674762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290528)	promoter-TSS (NM_001290528)	1.0	NM_198417	112415.0	Mm.145362	NM_198417	ENSMUSG00000057093	Zfp607b	C030039L03Rik	zinc finger protein 607B	protein-coding	6.84858712167314	6.77775874493692	6.76448550552476	6.88828991775961	6.80425404292585	7.02626488370398	7.06257369166152	6.92475640488465	0.176749592968873	0.363541242546969	0.668574361907056
Merged-chr1-60016369-4	chr1	60016266	60016466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357296, intron 3 of 10)	intron (NM_001357296, intron 3 of 10)	26756.0	NM_001357296	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	5.55591694044024	5.17503655490845	5.64992054645402	5.75003624072955	4.93745757953121	4.73104083613378	4.84467455481229	5.15921756562309	-1.16529667463017	0.000336550768317779	0.00557749642330412
Merged-chr11-26637886-4	chr11	26637806	26638006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43986.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	5.66889033344716	5.83374406598067	5.21100731886104	5.30260412426641	5.87449904877164	5.74374177819784	5.25211058276235	4.89848065482896	-0.031919315513883	0.929051118698714	0.974317157505369
Merged-chr8-94772118-4	chr8	94772027	94772227	+	951.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009142)	promoter-TSS (NM_009142)	-53.0	NM_009142	20312.0	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	4.14116293174366	4.22543651972534	4.56566291093296	4.4777339314607	4.51827098747519	4.36556990095454	4.39231393503395	3.86187652092157	-0.128007460995598	0.764256870102703	0.907569734027842
Merged-chr17-10358935-3	chr17	10358847	10359047	+	818.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34345.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	3.21634488284957	3.73670761477319	3.28457011930568	3.69990872077345	3.56539898695897	3.64215556769647	3.56610212258324	3.72785771696664	0.340187030291847	0.523997884672252	0.782704938068323
Merged-chr3-20155668-4	chr3	20155581	20155781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013755)	promoter-TSS (NM_013755)	-565.0	NM_013755	27357.0	Mm.6375	NM_013755	ENSMUSG00000019528	Gyg	AU017667|GN1|Gyg1	glycogenin	protein-coding	5.87577175896378	6.06751246874225	6.52463091017604	6.54385022647592	5.61243130373987	5.84670838988669	5.84682734618768	5.96585509783443	-0.750272601836713	0.0065453928843608	0.0578966720661013
Merged-chr18-9451023-3	chr18	9450880	9451080	+	658.9111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026484)	promoter-TSS (NM_026484)	-826.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	3.10918396863451	3.05273823923005	3.16598627308383	3.12975131182473	2.95432089443865	3.03058120053926	3.03979358631888	3.10796741388448	-0.347816994676453	0.537966584481315	0.79126455418755
Merged-chr5-134617355-3	chr5	134617264	134617464	+	869.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2339.0	NM_020044	56743.0	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	3.53478493762724	3.25911772439215	3.53530969541705	3.59237625193592	3.21858237699944	3.17813006686135	3.19116021967201	3.32107104052655	-0.957393797978909	0.0764151244530185	0.298608407545507
Merged-chr8-84638806-3	chr8	84638721	84638921	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007578, exon 46 of 47)	exon (NM_007578, exon 46 of 47)	24031.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	4.44852727177641	4.35586590777698	4.24199684994671	4.46836110550469	4.32468051005337	4.32235851510357	4.0822443594387	3.75570400493505	-0.585862368815962	0.16772751374434	0.459674907623916
Merged-chr19-32950409-4	chr19	32950300	32950500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	192823.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	7.00296591513488	6.59408123037944	6.80091140274586	6.90310044979652	6.81646927844441	6.6312672552717	6.75251479739326	6.31485402402918	-0.263344200475223	0.239183694822281	0.549614418057695
Merged-chr9-106367843-4	chr9	106367741	106367941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153459)	promoter-TSS (NM_153459)	-791.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	8.34381629626091	8.58009370309375	8.23486231865829	8.37024172701877	8.66003753127583	8.67461321034515	8.74557439529856	8.3993816027089	0.298763602516908	0.0693046962396836	0.281545286012729
Merged-chr14-77864279-4	chr14	77864167	77864367	+	932.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025384, intron 1 of 5)	intron (NM_025384, intron 1 of 5)	10650.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	4.62303454166584	4.4876054811859	4.46695527742217	4.73916980309738	4.38435449271473	4.26195859432298	4.52671042646368	4.33256110104871	-0.489129132975231	0.188032654316614	0.486541939824349
Merged-chr4-45795849-4	chr4	45795724	45795924	+	993.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3198.0	NM_028270	72535.0	Mm.331583	NM_028270	ENSMUSG00000035561	Aldh1b1	2700007F14Rik	aldehyde dehydrogenase 1 family, member B1	protein-coding	4.58253680886973	4.30872421987995	4.74617285540718	4.56188915184968	4.85396978961393	4.99330436870191	4.8325286258312	5.18895177148014	0.859156870877635	0.0128383098942806	0.0942857665994628
Merged-chr4-143389368-4	chr4	143389219	143389419	+	740.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5122.0	NM_031377	83491.0	Mm.190607	NM_031377	ENSMUSG00000041805	Pramel1	-	preferentially expressed antigen in melanoma-like 1	protein-coding	3.69678347534787	3.31811020552821	3.49802537630393	3.13654385199487	3.33943847717168	3.50114018183341	3.42937585126862	3.59942063505713	0.174771345735734	0.744289621253582	0.899239415948819
Merged-chr6-97429931-4	chr6	97429821	97430021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	MTD|LTR|ERVL-MaLR	29365.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	6.27274223334582	5.99274572670218	6.25553600296564	6.36569111295607	5.69063956849243	5.94532589483077	6.14777209956625	6.50087420462442	-0.207734579307941	0.448025754355481	0.73332468018769
Merged-chr16-92695611-4	chr16	92695524	92695724	+	853.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001111021, exon 3 of 8)	exon (NM_001111021, exon 3 of 8)	1705.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	3.99089898738121	4.22130719771726	4.04110734784878	3.93390871747694	4.02322884510507	3.9516681732214	4.07116801276121	4.41452270613551	0.208590410512005	0.623438179607784	0.838952007961678
Merged-chr2-157566802-4	chr2	157566709	157566909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016916)	promoter-TSS (NM_016916)	-448.0	NM_016916	53619.0	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	7.12258318896431	7.41865080939665	6.97827775716171	6.90410210482002	6.96899049396714	7.18055017813562	6.91712731404253	6.93418290333505	-0.157230980623825	0.455640246209185	0.739056515847221
Merged-chr11-110542095-3	chr11	110541991	110542191	+	989.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62751.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	5.0384920627689	4.75100368595212	4.41132673407348	4.71955493674249	4.2414690793186	4.05398519600281	4.63497852126401	4.40856687270317	-0.89111163023946	0.0270560662264624	0.156460518891458
Merged-chr5-114924851-8	chr5	114924487	114924687	+	864.59375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359946, intron 1 of 4)	intron (NM_001359946, intron 1 of 4)	1347.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	3.42155293175074	3.80930307249556	3.59999213293511	3.38266690293662	3.83578962864295	3.82566915030157	3.69113918365249	3.7043978124034	0.651156851460088	0.175831178574925	0.470658653309832
Merged-chr7-80229879-4	chr7	80229791	80229991	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291276, intron 1 of 4)	PB1D10|SINE|Alu	2914.0	NM_001291276	23991.0	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	5.18242222113057	4.76089592711983	5.27358729205939	5.33110314408829	5.33698460711454	4.78613634289444	5.33084859325687	5.08261854019239	-0.00042526049768758	0.998999482193518	0.999515665343703
Merged-chr12-80816619-4	chr12	80816518	80816718	+	994.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	26086.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	6.04140142842282	6.20230796633357	5.24640127526967	5.44339098584843	6.03052227143258	6.4051710843691	5.92733472265195	5.81541054590492	0.432841968729359	0.18255990748364	0.479145709984439
Merged-chr1-136140236-4	chr1	136140170	136140370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	8880.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	6.78318445717467	6.96736949984719	7.24625379265613	6.96403642929751	6.90204863729566	7.1513281278416	6.82100372170458	6.79415692855159	-0.106147072547102	0.610032019145739	0.831414795136035
Merged-chr19-4099268-4	chr19	4099175	4099375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_075078)	promoter-TSS (NR_075078)	-723.0	NR_075078	18739.0	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	5.63446011472355	6.08091684190471	5.46664248904037	5.51559736838341	5.79579241838662	5.67327209547116	5.46893387565181	5.84857447061994	0.0211472640659413	0.941838528952258	0.97898049638905
Merged-chr19-42518322-2	chr19	42518244	42518444	+	750.625	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_177464)	promoter-TSS (NM_177464)	-461.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	4.52303338717523	4.14480063139909	4.08550976935162	4.27327129064967	4.58341261299039	4.2106378253618	4.21499568233242	4.44449191251102	0.277876431859782	0.488715205842888	0.761377570765248
Merged-chr10-39171885-4	chr10	39171791	39171991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8097.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	5.85963285488287	6.17826909696387	5.99997904978365	6.13208206088711	5.89328266160403	6.23926803576613	6.2075730767582	5.92800647803244	0.0170627847428484	0.944858604564303	0.980163337636506
Merged-chr15-93336401-4	chr15	93336314	93336514	+	932.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028315, exon 2 of 5)	non-coding (NR_028315, exon 2 of 5)	521.0	NR_028315	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	4.68219523925909	4.96111598188513	5.00191821428067	4.76863072596174	4.64485725344912	4.81717512261076	4.81159544022579	4.59685305344361	-0.287373821687267	0.396014997415791	0.6950249619634
Merged-chr14-30593895-4	chr14	30593811	30594011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16399.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	7.12209267991271	7.18500163676622	7.24332974350437	7.09570285506452	6.81494884032079	6.69663730858496	7.21740212750066	7.03553131012658	-0.282224022174952	0.165195690312418	0.455772085768736
Merged-chr1-34579682-2	chr1	34579583	34579783	+	603.25	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_213727)	promoter-TSS (NM_213727)	-10.0	NM_213727	211383.0	Mm.330696	NM_213727	ENSMUSG00000045174	Amer3	9430069J07Rik|Fam123c	APC membrane recruitment 3	protein-coding	3.72286606845306	3.85160853016805	3.9276339877176	3.56023670309877	4.17824280870456	3.78581002179612	3.65306218378338	4.01616330255456	0.487928365209179	0.300353000274456	0.612422387893833
Merged-chr1-172426976-4	chr1	172426879	172427079	+	976.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-48381.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	4.90756229672274	4.91400629496062	5.05085506506779	5.10803414038233	5.26594579271125	5.38021700446198	4.84726075651817	5.04742683261947	0.281163953945335	0.379487281033001	0.682018026184129
Merged-chr7-118637634-3	chr7	118637516	118637716	+	902.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028930, intron 1 of 17)	ORR1D2|LTR|ERVL-MaLR	3880.0	NM_028930	74424.0	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	3.2631034892072	3.33230253651063	3.19350725732849	3.20140623684528	3.89358590068068	3.68784604237488	4.00192759434116	3.72002341143812	1.91601193180764	0.000106951242920527	0.00214829344728395
Merged-chr19-5965422-3	chr19	5965344	5965544	+	877.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1238.0	NM_008893	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	3.55301269783405	3.56444784233844	3.49680617135786	3.49579889465013	3.6178529010651	3.92480338874537	3.53967373609512	3.55155848672085	0.439464438398042	0.360458548327717	0.665846910736734
Merged-chr17-78735820-2	chr17	78735757	78735957	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011500, intron 1 of 17)	intron (NM_011500, intron 1 of 17)	703.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	3.12580697174512	3.17417843043505	3.29851791358458	3.02586489962163	3.24732073136911	3.46591568870057	2.91967150076894	3.12463418378322	0.192621123653244	0.738032634138011	0.896580162228794
Merged-chr9-107635496-4	chr9	107635391	107635591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008138)	promoter-TSS (NM_008138)	-149.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	8.60369493030904	8.66043759577732	8.56281016325896	8.38884802933653	8.667481015944	8.84161981901957	8.84870854033444	8.6581335981529	0.253706741008974	0.0994379280926515	0.345819723638386
Merged-chr3-96883591-4	chr3	96883469	96883669	+	856.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026229, intron 7 of 13)	intron (NM_026229, intron 7 of 13)	21729.0	NM_026229	67549.0	Mm.46722	NM_026229	ENSMUSG00000028096	Gpr89	4933412D19Rik|Gpr89a|SH120	G protein-coupled receptor 89	protein-coding	3.80585662864342	4.01489647727367	4.08503312911869	4.45308407514318	4.42994343006168	4.25977060131095	4.37583571145393	4.39346542611515	0.564066269420198	0.197105226188168	0.498410489804912
Merged-chr9-20727083-4	chr9	20726997	20727197	+	736.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357635)	promoter-TSS (NM_001357635)	-94.0	NM_001357635	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	3.90639778651614	3.92574064325662	4.09452329837316	3.97829178172265	3.78729983615594	4.02833672048422	3.93976828360775	3.95415270104971	-0.149674131550657	0.726308269731052	0.891034932051019
Merged-chr5-75871323-4	chr5	75871232	75871432	+	888.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107096.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	4.97727340462096	4.60579440637924	4.49349495558459	5.01921435519177	4.26303318691745	4.23123448380978	4.19460182384681	4.40348809167785	-1.20685593076231	0.00200516251899725	0.0234398855213837
Merged-chr7-4237676-4	chr7	4237605	4237805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081239)	promoter-TSS (NM_001081239)	-49.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	5.3876097258982	5.39380489879156	5.77525969730482	5.5055142036189	5.46510873000691	5.43912363787417	5.52971639541791	5.5537829282228	-0.0426419575782137	0.876756252470139	0.953778173570731
Merged-chr5-103655484-4	chr5	103655399	103655599	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028824, exon 1 of 4)	5' UTR (NM_028824, exon 1 of 4)	225.0	NM_028824	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	5.1803667651106	5.2038756788888	5.18124863130389	5.21022318784432	4.82251592793912	5.19005199595743	5.02566763554176	5.2384362834151	-0.243234538051079	0.428276174446664	0.719325810566156
Merged-chr5-32134579-2	chr5	32134479	32134679	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-1893.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	3.65409452494818	3.41708360739056	3.60164594202049	3.38871971219498	3.43290034666159	3.41512710773655	3.63920610003662	4.12274467035219	0.530971251985347	0.312474596684451	0.624466668091151
Merged-chr8-94802540-4	chr8	94802433	94802633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-7920.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	5.03950000775091	5.19484556738395	5.04034184358644	4.89848435104573	5.1298711703119	4.99261578738869	5.2066198537317	5.39549065779609	0.285783168322624	0.354058356363573	0.660831376621657
Merged-chr2-168579739-3	chr2	168579641	168579841	+	814.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	10624.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	3.26999486011422	3.65972273719428	3.32510669562077	3.49761317370891	3.18171310925966	2.83272240451109	2.87643127647583	3.02404522076775	-1.83077535790206	0.00471310791551394	0.0454818747720129
Merged-chr17-45573318-4	chr17	45573197	45573397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008302)	promoter-TSS (NM_008302)	-36.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	7.32706715969566	7.27256226439386	6.533171223981	6.69260512651535	7.3480098082504	7.41206250750171	7.20942688640713	7.58358695760365	0.539929518935542	0.0260054762075215	0.152489693363845
Merged-chr2-155443536-4	chr2	155443500	155443700	+	926.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2817.0	NM_019825	56406.0	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	3.55442957637263	3.08319735142242	3.43679423788861	3.39497794631256	3.93087810785249	3.55432195341788	3.79333880094961	4.02059042543122	1.442589812601	0.00517592505911915	0.0487324298654817
Merged-chr11-40754795-4	chr11	40754705	40754905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009831, intron 1 of 5)	intron (NM_009831, intron 1 of 5)	481.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	4.93827737275768	4.75121262049169	5.36246053544704	5.09357388521289	4.42758500390402	5.07821495750732	5.17207668303852	5.03908255088793	-0.202084693585386	0.585930083183684	0.818478990587386
Merged-chr5-104005220-4	chr5	104005130	104005330	+	920.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053262, intron 4 of 6)	intron (NM_053262, intron 4 of 6)	16566.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	3.79875354435466	4.43162096786157	3.98202042368684	4.29179729500295	4.5588309527058	4.32058707161478	4.43585825340013	4.76796476782276	0.866853972879461	0.0440469775329686	0.213978966272125
Merged-chr13-23562462-4	chr13	23562343	23562543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178205)	promoter-TSS (NM_178205)	-78.0	NM_178205	319151.0	Mm.261658	NM_178205	ENSMUSG00000069273	Hist1h3e	H3-f|H3.1	histone cluster 1, H3e	protein-coding	7.928682264782	8.2292958272966	8.02782883635321	7.98714311894647	8.2458637190844	8.35702923156491	8.09272990279725	8.06225969448614	0.189146224915744	0.259023114414781	0.570794998659786
Merged-chr8-95055118-4	chr8	95055036	95055236	+	996.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042715)	promoter-TSS (NM_001042715)	33.0	NM_001042715	330830.0	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	4.87420757728995	5.23890155402294	4.99011979844442	4.77173668496847	5.17946339142894	5.23736290986038	5.56407986594496	5.39201737252692	0.705571688316861	0.0253057606236609	0.149766253881397
Merged-chr1-151339046-4	chr1	151338964	151339164	+	889.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5422.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	3.79921926534385	3.50880468567787	4.08390181586545	4.41207297819872	3.92156231305386	3.62141738001648	3.61713816816622	3.99357655981126	-0.567810558256753	0.284502900801062	0.596324963525583
Merged-chr3-78314552-4	chr3	78314456	78314656	+	890.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	830331.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	3.8729752106241	3.7860373673694	4.38635972805703	4.57064494263587	4.13467326649292	4.20914998516498	4.24612867815538	3.98081970651917	-0.165290863261296	0.725938263841588	0.890965767427889
Merged-chr1-161550872-4	chr1	161550774	161550974	+	876.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56217.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	3.86959283711132	3.47463293583304	4.09620853350247	3.73661919579372	3.64655441092412	3.58642317185375	4.07695649231711	4.09351611419593	0.176530510150391	0.72472029697351	0.890422833588412
Merged-chr18-63694064-4	chr18	63693939	63694139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44E|LTR|ERVK	-1680.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	6.16235405844188	6.46147417401949	6.45230978851243	5.55983598554988	5.89568369509962	5.83184395138317	5.65159470028589	5.97408410669698	-0.551428885954363	0.069423400541831	0.281791071348483
Merged-chr5-53999207-4	chr5	53999116	53999316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	693.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	5.02456704518104	4.82914219730405	4.8492701300601	4.73414955660876	5.05663850502446	5.02386477975655	5.00090950223227	5.08604374135705	0.38171298881191	0.222505300942765	0.530576375738864
Merged-chr10-84286315-4	chr10	84286201	84286401	+	972.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	154170.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	4.51088885932205	3.97851830886041	4.59101284295879	4.94903065864265	4.62739873704035	3.88660175809836	4.49063333512244	4.83174678583396	-0.122845791255111	0.801056670686478	0.923337043240231
Merged-chr4-132944307-4	chr4	132944213	132944413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21762.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	6.63238761153227	6.36090334635461	6.7323081596873	6.70912960326995	6.30408300852191	6.33503906050147	6.08232006944296	6.27512347246808	-0.540886959530157	0.0159032127571456	0.109211266844271
Merged-chr19-42092107-2	chr19	42092023	42092223	+	635.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145501, intron 1 of 8)	B1_Mur3|SINE|Alu	1688.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	3.11972343318898	2.79977272507539	2.89519876304275	2.78612523883001	2.77159579169461	2.8022830017773	2.88480704670204	2.95370752798093	-0.211435717842009	0.732135669690525	0.893930797678999
Merged-chr6-127561736-4	chr6	127561641	127561841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-16234.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	5.68076683702617	6.02942716495016	5.25772174546104	5.58670383603909	5.77009375702073	5.85709821625534	5.79804743747415	5.89066790809449	0.259799464284697	0.356714053222053	0.663163726442201
Merged-chr2-61514208-3	chr2	61514103	61514303	+	959.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64383.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	4.25883184171417	4.03797636935134	4.45119607149444	4.53041956350297	3.50985137102194	3.68647804721787	3.91469647486943	4.17119641534692	-1.34662012967574	0.00516378377587401	0.0486567280800911
Merged-chr14-21048067-1	chr14	21047967	21048167	+	580.0	f0_balb.idr	intron (NM_018829, intron 1 of 8)	PB1|SINE|Alu	4375.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	2.87961734610929	3.05713202709456	2.81168338256872	3.32877928151491	2.9478183788099	3.11463565906952	2.99607343359316	3.00513627761801	-0.142497576668898	0.819983905635502	0.931108965912026
Merged-chr2-103606789-1	chr2	103606689	103606889	+	1000.0	f0_balb.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	40479.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	4.31072873558294	4.11308895781746	3.67205533367705	3.37467866037365	3.72117700032245	4.11100451407466	3.71480499191388	3.78287855870724	-0.209191867687002	0.69426432357129	0.875811600777424
Merged-chr13-76098009-2	chr13	76097909	76098109	+	773.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081352)	promoter-TSS (NM_001081352)	651.0	NM_001360843	77041.0	Mm.196399	NM_029847	ENSMUSG00000021592	Arsk	2810429K17Rik|4833414G15Rik	arylsulfatase K	protein-coding	3.11746557445391	3.25745331785668	3.11785166819043	2.90552464183026	3.04881972952921	3.29089542073704	3.16613756799247	3.39253074419594	0.502596654442216	0.374774375872355	0.677891254741963
Merged-chr3-117319846-4	chr3	117319749	117319949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177664, exon 7 of 7)	3' UTR (NM_177664, exon 7 of 7)	41027.0	NM_177664	229791.0	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	6.87925285971629	7.08124040910703	7.10020460790763	7.30667556009252	6.82046811309611	6.47750667463115	6.83214549800322	6.33432751149537	-0.65563551091222	0.00367137533105809	0.0374283621726416
Merged-chr17-26605784-4	chr17	26605679	26605879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	44267.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	7.44799298925365	7.44751425640887	7.45863627098739	7.5680120059438	7.3435142044406	7.28269866378229	7.05706692059464	7.36655379038719	-0.289172094201245	0.10795764786837	0.362559597364667
Merged-chr9-40581962-4	chr9	40581904	40582104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50621.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	7.68659884453254	7.65199099588395	8.14332192956735	7.91217432973943	7.76070992213455	7.83067960922101	7.96921347570664	7.89971034873902	0.00114777050506144	0.995021397296778	0.998190746524986
Merged-chr12-57244355-3	chr12	57244243	57244443	+	959.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164370, intron 1 of 9)	intron (NM_001164370, intron 1 of 9)	13918.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	4.12485852438634	3.7093518273835	4.04336775695423	4.05623672654214	3.60928381966227	3.57890012623961	3.89192213363389	3.46069747280796	-1.0355556491582	0.0331897166963221	0.178966115117447
Merged-chr8-86878735-4	chr8	86878633	86878833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	6525.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	6.43241219732759	6.55399897000924	6.46654754367518	5.74697619611063	6.32407070009264	6.57515746003471	6.43333870685658	5.87105533981108	0.000118406302307302	0.999675025617381	0.99982999537768
Merged-chr6-141066024-4	chr6	141065921	141066121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-183248.0	NM_018779	54611.0	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	6.58916892383699	6.50318361894513	6.69844020590109	6.92551578148808	6.52953532044336	6.28577196376285	7.00952046707964	6.84660272763093	-0.00316639409690081	0.989724187776414	0.99588367712165
Merged-chr13-83655158-3	chr13	83655062	83655262	+	839.0499880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347576, intron 8 of 10)	intron (NM_001347576, intron 8 of 10)	-66219.0	NR_152244	320203.0	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik|ECONEXIN|EyeLinc1|Visc-1	RIKEN cDNA C130071C03 gene	ncRNA	4.11950290170107	4.24210545757317	4.86648321294398	4.57197027081607	4.18733257187232	4.29715528267351	3.88537729401073	4.11767574915118	-0.858472533403616	0.0505241197676336	0.233168183715658
Merged-chr15-59646921-4	chr15	59646823	59647023	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1731.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	5.96302855723628	5.91913274557581	5.85239007276718	6.03822660934158	5.70737700219942	5.41804186621722	5.64867130542812	6.26177377747809	-0.243064549255744	0.393592875579861	0.69271684323366
Merged-chr4-152173213-4	chr4	152173100	152173300	+	831.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4900.0	NM_133348	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	3.63029771129001	3.85319171081995	3.63076348260323	3.80412383105662	4.00051705061415	3.62676497002584	3.77619076900559	3.93230732299818	0.316648653310668	0.493286465860174	0.764102772474043
Merged-chr10-22059581-2	chr10	22059492	22059692	+	918.833374	f0_c57.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	8487.0	NM_053264	114671.0	Mm.288194	NM_053264	ENSMUSG00000069712	4930444G20Rik	-	RIKEN cDNA 4930444G20 gene	protein-coding	3.14897091632956	3.12004466562374	2.99326458324181	2.9870550104242	3.95747834757794	3.76759109902846	3.98282751417725	3.9607536935374	2.95539103555011	3.59265122927688e-08	1.70594610973115e-06
Merged-chr2-132516423-3	chr2	132516305	132516505	+	832.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028286, intron 2 of 3)	ORR1A2|LTR|ERVL-MaLR	25677.0	NR_028286	70371.0	Mm.394667	NR_028286	ENSMUSG00000086379	1700026D11Rik	-	RIKEN cDNA 1700026D11 gene	ncRNA	3.41496151058738	3.36206006476124	3.13638024798711	3.00274662395408	2.82852323558039	3.04628754138219	3.24233383034735	3.46248062859674	-0.271081529171241	0.659078067434701	0.858090014136687
Merged-chr12-4189248-4	chr12	4189150	4189350	+	773.012512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 3 of 21)	intron (NM_001159537, intron 3 of 21)	44715.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	4.41986935851039	4.16007715726887	4.03558213684955	4.20230550097937	3.9320266392064	4.20879091629365	4.24548301057411	3.98246149543758	-0.306549529551598	0.462060454515035	0.743590347997415
Merged-chr5-99215435-4	chr5	99215307	99215507	+	982.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37520.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.77357877995737	5.96504814661743	5.4154157088802	5.41463972361395	5.36482816168831	5.78154102902238	5.29680282197932	4.99613912110665	-0.468969516202432	0.14959897599941	0.43192737243589
Merged-chr10-77591066-3	chr10	77590954	77591154	+	766.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145925, intron 3 of 5)	intron (NM_145925, intron 3 of 5)	9399.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	3.69486010080891	3.41428902037442	3.59388543208079	3.52418365275781	3.75474568807712	3.59861740405642	3.47072231359678	3.53801945437772	0.145688768616756	0.764787725066036	0.907812114625849
Merged-chr17-50292922-4	chr17	50292856	50293056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010021, intron 1 of 10)	CpG	664.0	NM_010021	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	7.36970261413108	7.26508549676722	6.98333933764609	6.8556241962587	7.15686409477732	7.14757734813804	7.35312132822791	6.79733662222744	0.00523661735972046	0.981189051585998	0.993217223471419
Merged-chr16-25967500-3	chr16	25967393	25967593	+	628.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173379, intron 13 of 14)	intron (NM_173379, intron 13 of 14)	138291.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	3.68297248745663	3.62278269027462	3.58131069988782	3.35129163705743	3.47960798998039	3.58584296081216	3.61833408238273	3.5250647150022	-0.00915591303483799	0.985175073767688	0.994598605754949
Merged-chr3-146560617-1	chr3	146560517	146560717	+	750.333313	f0_balb.idr	Intergenic	Intergenic	-36532.0	NM_009474	22262.0	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	2.77185830463484	2.76073749624457	2.77226170340056	3.12789782385533	2.19218802130652	2.3984470770571	2.29064823166095	2.2944168300602	-5.02953551529764	1.14548331186715e-05	0.000311199834562564
Merged-chr12-55421460-4	chr12	55421344	55421544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	22619.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	6.38846614214395	6.14752578664329	5.86533145806345	6.23602201132043	5.89633096443612	6.06759028704874	6.2894700204898	6.16988420736777	-0.108012265281964	0.664780158796364	0.861073297406066
Merged-chr17-29079054-4	chr17	29078913	29079113	+	975.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_036469, exon 1 of 2)	non-coding (NR_036469, exon 1 of 2)	113.0	NR_036469	100504267.0	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	5.12150270795392	5.44741466370102	5.08996424985954	5.02863158669701	5.15915742904196	4.97426872010207	4.77396176830569	5.01916732707348	-0.345075805745234	0.287262696877166	0.598979176834825
Merged-chr2-121271492-4	chr2	121271390	121271590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290830)	promoter-TSS (NM_001290830)	-83.0	NM_013735	27223.0	Mm.215389	NM_013735	ENSMUSG00000043909	Trp53bp1	53BP1|Tp53bp1|m53BP1|p53BP1	transformation related protein 53 binding protein 1	protein-coding	7.58926853229573	7.5100713002308	7.21762540065369	7.65716770573691	7.69915733774134	7.59031977239261	7.7609132224398	7.52281910278376	0.179093585596831	0.33326920386265	0.644083500616735
Merged-chr5-150140673-4	chr5	150140574	150140774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119256.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	5.58686916446101	5.51784179600585	5.41162458668107	6.00483886328515	5.71222858050715	5.84232269269875	5.71348479597641	5.80928185966629	0.148730306753096	0.602121548584396	0.827431600688833
Merged-chr11-110473624-4	chr11	110473510	110473710	+	854.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	-4905.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	3.92992071448548	4.45904066573555	3.61672312326466	3.53106023750327	4.6841610384028	4.40556963197669	4.21176025725433	4.43476082912092	1.25897007160015	0.0105574877715216	0.0821226566029832
Merged-chr16-90283744-4	chr16	90283645	90283845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 1 of 19)	CpG	741.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	5.50037528248545	5.76623077865209	6.05528906381768	5.30414224228945	5.83834469667542	5.41812783216746	6.00453065636565	6.28123057791998	0.401098769514995	0.208496022322159	0.51287456361864
Merged-chr2-91950926-4	chr2	91950934	91951134	+	908.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166597)	promoter-TSS (NM_001166597)	-686.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	3.86633294273232	3.44766433971275	3.82361442333566	3.54498916958914	3.81345455751696	3.46217150298782	3.27179798402231	3.2123263457536	-0.655771705195142	0.244918142561663	0.556041743592563
Merged-chr10-10733368-3	chr10	10733294	10733494	+	934.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114333, intron 6 of 9)	intron (NM_001114333, intron 6 of 9)	-17652.0	NR_046010	78056.0	Mm.271285	NR_046010	ENSMUSG00000112730	4930567K20Rik	1700038H22Rik	RIKEN cDNA 4930567K20 gene	ncRNA	3.58799251948382	3.57934500044168	3.48367076348256	3.72944094838612	3.38053878915774	3.54095857042676	3.23610941809375	3.42607082411767	-0.715206307658962	0.161442740308378	0.450234408667086
Merged-chr18-56433283-4	chr18	56433194	56433394	+	982.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	1162.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	4.98065666767989	4.85524677194076	5.05059214705647	5.08323832533441	5.13872518682612	5.08380200265585	5.21176239946977	5.1126366441837	0.260273595915619	0.390086580000537	0.690245822100553
Merged-chr17-31038577-4	chr17	31038481	31038681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19113.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	7.83960921463962	7.70964169721849	8.0039582183217	7.95638894462026	7.10275515840067	6.80199899946675	6.90760884592919	7.00714485643075	-1.22542312409425	5.53422065498859e-11	4.40768942324445e-09
Merged-chr1-139068413-1	chr1	139068313	139068513	+	975.0	f0_balb.idr	intron (NM_001166501, intron 9 of 21)	GA-rich|Low_complexity|Low_complexity	90756.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	3.64785107477576	3.36924094473705	3.32856225543338	3.7408637456847	3.4040057126454	3.09547457421789	3.25577310287676	3.69230912373176	-0.531777378102229	0.349534839270118	0.657041681836152
Merged-chr9-118651057-4	chr9	118650971	118651171	+	947.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	44362.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.52842643167533	4.99153770075804	5.40283013086395	5.51393320376236	4.87740158672189	4.80321924050441	5.29350155730183	4.95724803598648	-0.722212633246793	0.028682643273769	0.162664478175731
Merged-chr1-152619994-3	chr1	152619868	152620068	+	784.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	5249.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	2.86573301702721	3.04931228655061	2.86608361748384	2.8165954256122	2.7821461570328	2.62514797872935	2.85594554173534	2.86466569167426	-0.532600509953433	0.398601011061285	0.696793179038619
Merged-chr4-40244286-4	chr4	40244165	40244365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57E2|LTR|ERV1	-4440.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	6.75699363820882	6.87114530842823	6.65222716173596	6.71696286084099	6.87751230585884	6.9910413990375	7.06352755187899	6.61570075935894	0.205411326779073	0.319613303878504	0.631524558708573
Merged-chr9-66876719-3	chr9	66876640	66876840	+	954.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	-42034.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	4.09750891108843	4.13362526148117	3.96456634677178	3.98813950421391	3.85998741451987	3.88111152177129	3.50975531731866	3.70332267743466	-0.844175685572741	0.0657080686015141	0.272904342104515
Merged-chr10-13500687-4	chr10	13500618	13500818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330198)	promoter-TSS (NM_001330198)	-310.0	NM_001330198	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	5.1019189839959	4.93151443007717	5.10278090882017	5.1470664874939	5.01272382268873	5.20978094877882	5.46651505489705	4.84621889641134	0.138996158999941	0.666051655909967	0.861861238586864
Merged-chr6-99485395-4	chr6	99485321	99485521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	35572.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	5.88447147328431	6.23475936914946	6.51561361965364	6.87600391030053	5.77751188894476	6.01382035114614	6.36925999657585	6.39757554025123	-0.426116321393279	0.160528724807469	0.448715634744611
Merged-chr10-25279499-4	chr10	25279386	25279586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 3 of 7)	intron (NM_018747, intron 3 of 7)	19677.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	5.49823247018013	5.2434580701555	5.88564429514864	5.92049032157753	5.24812201023404	5.21036785745628	5.62957289438727	5.83919021741049	-0.288918468636304	0.375786483634883	0.678627581343329
Merged-chr18-32285334-4	chr18	32285227	32285427	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44996.0	NM_133658	13872.0	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	4.70757279770481	4.35880516958922	4.32263011904829	4.73373620641498	4.66205551361703	4.64020834633695	4.53008823952078	5.0290211486189	0.368119411122461	0.330381380974821	0.641796043873533
Merged-chr12-99608484-4	chr12	99608399	99608599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136760, intron 2 of 3)	intron (NR_136760, intron 2 of 3)	19475.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	6.38797199624223	6.33594885634448	6.37183782173505	6.4482789329794	6.59916736674075	6.34092186645371	5.95826729187247	5.7250053199256	-0.262169540949167	0.333464624365182	0.644188029374994
Merged-chr5-4935311-4	chr5	4935194	4935394	+	978.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 11 of 14)	intron (NM_011074, intron 11 of 14)	-177078.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	4.88602382991608	5.32626201659634	5.68459568798345	5.92597117326702	5.00790173140228	5.11058511381805	5.34943500782197	5.5102088305724	-0.481400030769069	0.180926149072803	0.477339499790692
Merged-chr15-9748050-3	chr15	9747940	9748140	+	670.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305042, intron 1 of 36)	intron (NM_001305042, intron 1 of 36)	828.0	NM_177123	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	3.4960587600711	3.6620064113572	3.66470506266705	3.85752624860946	3.77211591350152	3.54943079102943	3.48414096089847	3.90112168217534	0.00996415352805981	0.98388391049243	0.994177974055515
Merged-chr13-88459038-4	chr13	88458949	88459149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-362423.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	5.54835784393405	5.62556400022769	6.03087619794072	5.89245521358074	5.80934449640691	5.50772907194531	6.11387273145441	5.96509969348236	0.12163580024302	0.663333761407959	0.860482180927763
Merged-chr17-65783393-2	chr17	65783292	65783492	+	692.5	f0_balb.idr|f0_c57.idr	promoter-TSS (NR_104465)	promoter-TSS (NR_104465)	37.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	4.05509678046183	3.76440340733941	4.0557138462623	3.93322670247347	4.09100028600306	3.92772003932496	3.94546174796682	3.91047209220952	0.0651502862545082	0.879311137379475	0.954835122542429
Merged-chr7-4239370-4	chr7	4239275	4239475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081239, intron 4 of 5)	intron (NM_001081239, intron 4 of 5)	1621.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	6.29835718005605	6.49617244866335	6.80490446413794	6.17697938657511	6.37239968852339	6.39718213162256	6.64801141237738	6.70569170603344	0.121006498591774	0.621615733999525	0.837944554861507
Merged-chr13-100866307-7	chr13	100866148	100866348	+	893.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32821.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	3.28834072011693	3.44998853014931	3.16504443319091	2.92558792235774	3.45494088819672	3.62348706134019	3.27631483234371	3.28702977581586	0.735603064423096	0.190006907423116	0.489103163231511
Merged-chr10-115184908-1	chr10	115184808	115185008	+	565.0	f0_balb.idr	5' UTR (NM_173391, exon 1 of 11)	5' UTR (NM_173391, exon 1 of 11)	114.0	NM_173391	216343.0	Mm.31597	NM_173391	ENSMUSG00000006764	Tph2	AU043594|Ntph	tryptophan hydroxylase 2	protein-coding	3.22987434066176	3.1148459160085	3.23030971852185	3.20852230905524	3.0811594167567	2.95333982686741	3.32238832448042	3.11298073476575	-0.282389535262153	0.615257005157934	0.834366192964669
Merged-chr13-30136454-3	chr13	30136367	30136567	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153546)	promoter-TSS (NM_153546)	-23.0	NM_153546	218121.0	Mm.89682	NM_153546	ENSMUSG00000038732	Mboat1	9130215M02Rik|BC023845|LPEAT1|Moact1|Oact1	membrane bound O-acyltransferase domain containing 1	protein-coding	3.65898477838403	3.26546886880976	3.65953830343347	3.68298267799438	3.08826706264627	3.36542013785992	3.3046629431523	4.11544504201383	-0.133412175166512	0.827116454304511	0.933672322391225
Merged-chr2-157447653-4	chr2	157447563	157447763	+	946.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 2 of 13)	intron (NM_001025395, intron 2 of 13)	23370.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	5.76209696386087	5.80802818218257	5.13402917597295	5.51444587993269	4.94094794914583	4.96982950881879	4.80703307444671	4.94881907874665	-1.2267493041078	0.000150028880035055	0.00285379627258556
Merged-chr15-50762878-4	chr15	50762788	50762988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	126161.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	5.43311689489315	5.31027446502763	5.24760799476749	5.48154842572465	5.26513237109345	5.81905174597505	5.79813572895938	5.45881854160912	0.373860846647513	0.207129367203684	0.511155608923865
Merged-chr11-97799010-4	chr11	97798885	97799085	+	844.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010688)	promoter-TSS (NM_010688)	-580.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	3.22117320660822	3.18533698864573	3.40777505283152	3.51295776421961	3.70872591399885	3.39937704204487	3.65280667011382	3.66666130023902	0.869584107567644	0.0975490368549722	0.342253480558159
Merged-chr6-121272685-4	chr6	121272585	121272785	+	979.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26779.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	5.17760780048152	4.8850113452871	4.80896808178167	5.0698082654222	4.65672284402089	4.77793058095471	5.18120356442981	5.0203270830224	-0.155946686888978	0.646289076741624	0.851295585787822
Merged-chr17-34077775-4	chr17	34077668	34077868	+	953.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14611.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	4.78148950247429	4.5030822682906	3.88240084240019	4.53084735976528	4.88266590738666	4.64938497909096	4.57720725000825	4.70888188118358	0.537481403889479	0.191333219859382	0.490749692363786
Merged-chr7-83586253-4	chr7	83586169	83586369	+	766.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177695, intron 1 of 22)	intron (NM_177695, intron 1 of 22)	1338.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	3.69935298919595	3.62473269837139	4.32176195241369	3.819709950405	3.70648726770761	4.28765678711659	4.14090383543802	4.24075789165986	0.576068308773137	0.238341633630008	0.54879281042504
Merged-chr14-27383633-3	chr14	27383528	27383728	+	790.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 4 of 10)	intron (NM_027871, intron 4 of 10)	22239.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	3.53768234061958	3.48929427226452	3.81365130936456	3.48478134257989	3.22950433821611	3.22909360774705	3.17632952231413	3.42921400931463	-1.12077975429439	0.0377237742151772	0.194160398884647
Merged-chr16-94609388-4	chr16	94609295	94609495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-2024.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	6.08049317865946	5.79353126615182	5.97248576222438	6.00157425981517	6.32365020102672	6.29781975716134	6.34529603150917	5.99079252676629	0.438161384609905	0.06521644198577	0.271798180461685
Merged-chr6-121336781-4	chr6	121336678	121336878	+	796.612488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144512, intron 13 of 14)	intron (NM_144512, intron 13 of 14)	-6298.0	NM_001347433	14411.0	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	3.87065052248996	3.81737740907733	4.11104664570085	3.90336828286393	4.24437788107075	3.627856764689	4.21591306254791	4.01798724818142	0.349015366001472	0.443165021892083	0.729779110682633
Merged-chr3-87376846-4	chr3	87376732	87376932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136236, intron 1 of 8)	intron (NM_001136236, intron 1 of 8)	445.0	NM_178165	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	6.18142028352315	5.9776822112888	5.82899793938817	6.08975823981356	6.15728889158434	6.2366328380956	6.16989299447447	6.17809136999403	0.235858366224261	0.309895444055488	0.622047371258887
Merged-chr11-114906878-4	chr11	114906789	114906989	+	973.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	16848.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	5.76982069717829	5.3697489683026	5.16228302330174	4.95019737424743	5.19141024681033	5.85535200100516	4.7480580432454	5.3179809435555	-0.0129826113558529	0.97299347700136	0.990282195228149
Merged-chr15-51730970-4	chr15	51730870	51731070	+	887.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134491.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	3.79207132729462	3.72643055733916	3.44926592317927	3.2737869435675	3.94114065695357	4.34622738826388	3.61733242489055	3.51107503992114	0.946286192023321	0.0767484512100829	0.299458598770468
Merged-chr14-26652116-3	chr14	26651988	26652188	+	726.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 3 of 5)	B2_Mm2|SINE|B2	13954.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	3.07066894444435	3.90169826159988	3.20707322128039	3.15784532985964	3.38181629558418	3.50454742899222	3.25855321676075	3.44184519448749	0.0580371262103318	0.9225091867897	0.971298693028147
Merged-chr10-87805943-4	chr10	87805854	87806054	+	993.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52311.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	5.5882920329671	6.25833792772901	5.5892738556366	5.01707220037138	5.84316166106278	6.03156262913349	5.41828624848453	5.37964216649533	0.0183731803344773	0.960057990664609	0.985737682958271
Merged-chr8-86881411-4	chr8	86881303	86881503	+	988.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	3855.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	5.8503697870551	5.53268476365593	5.31334228216239	5.22982038069892	5.62837151210645	5.91489847976392	5.37860493844658	4.98584266858193	0.0444897664400939	0.895559551482767	0.960919827429015
Merged-chr13-105054998-1	chr13	105054898	105055098	+	594.0	f0_balb.idr	promoter-TSS (NM_029879)	promoter-TSS (NM_029879)	-68.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	3.42575024508953	3.2032648077896	3.4262264097236	3.45745684300451	3.44949512547783	3.36843014984816	3.05367344856427	3.37038368604949	-0.216768794122563	0.689516613321266	0.873418603891305
Merged-chr13-101797164-4	chr13	101797055	101797255	+	870.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28938.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.15271016689071	4.18925980271528	4.28978323590088	4.54970616853349	4.0739922169285	3.95164140085244	4.4303399172421	4.40993580918076	-0.222150739078917	0.600820244498558	0.826967246454786
Merged-chr16-49858692-4	chr16	49858599	49858799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	3045.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	7.69360878162657	7.53635249963627	7.52056476037953	7.67339875808662	7.815121150811	7.73479225213835	7.87286101536415	7.34548666282672	0.131867776058693	0.482923164934144	0.757463266863053
Merged-chr11-44581450-4	chr11	44581365	44581565	+	908.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4852.0	NR_126460	75389.0	Mm.261421	NR_126460	ENSMUSG00000086501	4930597A21Rik	-	RIKEN cDNA 4930597A21 gene	ncRNA	5.72656778951294	5.72220488268698	5.99854149094015	5.81827589976155	4.62073119055318	4.72444066627293	4.61276164052288	4.63099483938451	-2.23895494429229	2.00668642444928e-12	2.03834502535243e-10
Merged-chr2-32981583-3	chr2	32981507	32981707	+	889.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151460, intron 2 of 8)	CpG-8008	476.0	NR_151461	56017.0	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	3.80686554744014	3.65602080849102	3.85627450206142	3.22765286803283	3.86031624714394	3.82456220218336	3.57766566679302	4.03211349902153	0.554981375837748	0.278742683136637	0.591009603347969
Merged-chr2-129297287-4	chr2	129297166	129297366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040371)	promoter-TSS (NR_040371)	-54.0	NM_181589	70466.0	Mm.45785	NM_181589	ENSMUSG00000048327	Ckap2l	2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm	cytoskeleton associated protein 2-like	protein-coding	8.47075763629691	8.72702068930887	8.24205631639634	8.30176680109178	8.52767102332067	8.69424870963878	8.48662510811472	8.37857943896413	0.0982197571579484	0.57673908743158	0.813726961967382
Merged-chr9-88733334-2	chr9	88733234	88733434	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16B2|LTR|ERVL	-1484.0	NM_007536	12047.0	Mm.378888	NM_007536	ENSMUSG00000099974	Bcl2a1d	A1-d	B cell leukemia/lymphoma 2 related protein A1d	protein-coding	3.20127797555984	3.29317506400975	3.37330285284154	3.00095096998034	3.31705850734709	3.31388778218563	3.3055816083112	3.37138013661464	0.426078804212685	0.428909984787014	0.719857371117313
Merged-chr6-115544638-4	chr6	115544506	115544706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199033)	promoter-TSS (NM_199033)	-98.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	7.26588550909905	7.22146475402943	7.02500692653259	6.68428010301703	7.02176189167638	7.0470388146448	6.69027826963889	6.68851418251365	-0.251708107629817	0.274971145271627	0.58673095357303
Merged-chr9-113727198-4	chr9	113727092	113727292	+	882.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-14281.0	NM_001286599	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	4.26325235330877	4.00693039726493	4.21960516852339	4.45916823500699	4.56241206500902	4.34604808497699	4.05975348734942	3.79585352099349	-0.0525588088080385	0.908084067985953	0.965960244231753
Merged-chr2-174018185-4	chr2	174018079	174018279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58872.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	7.03199018395051	6.9534987730717	7.19645595964686	7.33206344721499	6.98421402292088	7.13332620543991	7.2137027693937	7.05291173130817	-0.0721181513956501	0.714964507149927	0.886010584897636
Merged-chr16-30521920-4	chr16	30521815	30522015	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357415, intron 10 of 11)	intron (NM_001357415, intron 10 of 11)	28663.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	5.75403425152555	5.11198393926385	5.57451099720525	5.91432971261841	4.7146541403709	4.58241278289223	5.27788639497964	5.14108405506247	-1.22764547928698	0.000722514749707782	0.0103875584664665
Merged-chr15-73596073-4	chr15	73595984	73596184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	442.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	6.68634700763961	6.49109519038676	7.02042891730096	6.99864173857743	6.26109480532084	6.05489578465548	6.75163671641331	6.47598040164843	-0.594947767503735	0.0190939227381566	0.124038178933946
Merged-chr10-20774055-4	chr10	20773918	20774118	+	913.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-48940.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	5.00449262237344	4.65859698413175	4.87436956619308	4.69477551717081	4.78330220170901	4.64856387747015	4.8160922594554	4.87109807704863	-0.0416191205513858	0.90163830633264	0.963484657055261
Merged-chr8-95332985-3	chr8	95332893	95333093	+	891.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133954, intron 1 of 6)	intron (NM_133954, intron 1 of 6)	709.0	NM_133954	101985.0	Mm.29069	NM_133954	ENSMUSG00000031792	Usb1	AA960436	U6 snRNA biogenesis 1	protein-coding	3.72731958808378	3.67270503841083	3.50612103817965	3.86110688470363	3.53526124879992	3.49438349382651	4.09875522405072	3.61971974509432	0.0117156725473741	0.98159539862781	0.993444886661864
Merged-chr15-100447127-2	chr15	100447023	100447223	+	815.916687	f0_balb.idr|f1_balb.idr	Intergenic	PB1D10|SINE|Alu	-21888.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	4.01722993130571	4.29330898245568	4.10653915303563	4.05690536886753	3.33117419988111	3.9418296465689	3.69385606934368	3.76293268842051	-1.26276836793908	0.00975317386336084	0.0775492808780341
Merged-chr18-36522254-4	chr18	36522144	36522344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5908.0	NM_172830	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	5.67347949401551	5.66910735230256	5.38644697219808	6.06612801086441	5.5034062678416	5.62737267916697	5.85738922236714	5.94687214777726	-0.00584265830240643	0.984290232173813	0.994294815860951
Merged-chr5-120518318-4	chr5	120518213	120518413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 2 of 13)	intron (NM_001177595, intron 2 of 13)	7121.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	5.57732446149302	5.25089489051828	5.48247790699351	5.11546386915555	5.21248924246809	4.93100273842629	5.00648179721191	5.28787726135981	-0.43023137641531	0.174641340320949	0.469069910997419
Merged-chr19-42795135-4	chr19	42795028	42795228	+	913.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081257, intron 11 of 11)	intron (NM_001081257, intron 11 of 11)	-15150.0	NM_019424	192236.0	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding	4.63985621069988	4.17997788763924	4.2653858862054	4.22643903215878	4.6572830482585	4.65887992177303	4.46651720969514	4.44299900951288	0.535753472566205	0.157066171285429	0.44343221505337
Merged-chr5-92488359-4	chr5	92488259	92488459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	17298.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	6.63495916604746	6.58174674875511	7.27065126274108	6.75322190103794	6.71975470737402	6.73163007173227	6.92171345556106	6.53231346921307	-0.143883158355706	0.547260720720368	0.796773729062879
Merged-chr12-73589295-4	chr12	73589184	73589384	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 1 of 13)	L1ME2|LINE|L1	4488.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	5.00438377311007	4.92243824785365	5.13064569931002	5.27757095835919	4.8018484027342	4.34347582110975	4.9136595790551	4.89893909882325	-0.672986572066343	0.0543964798451575	0.243530224473141
Merged-chr10-120220174-4	chr10	120220083	120220283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026617, intron 3 of 6)	intron (NM_026617, intron 3 of 6)	-6877.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	7.18396367985285	7.1417266129442	7.32404167348232	7.20485820167552	7.08177619266446	7.39519706854054	7.41186924390764	7.1106376504849	0.0529010447391041	0.780929277131353	0.914736041221923
Merged-chr11-106623825-4	chr11	106623737	106623937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-10907.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	6.69489928988595	6.88342795173222	7.0210018257372	7.15845004741569	6.66941085012656	6.58077389296442	6.97361582752913	6.90390521015704	-0.241490318026717	0.267736877619259	0.57947648651629
Merged-chr7-81849409-4	chr7	81849305	81849505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9596.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	8.05284005226598	8.24161721447447	8.14337631716841	8.1924196395276	8.08544283534111	8.26436397932118	8.12302917805025	7.81737103685988	-0.102748103522194	0.542324480244212	0.793792189580563
Merged-chr4-16120861-4	chr4	16120760	16120960	+	972.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42783.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	4.58294028065052	4.68097160634732	4.6999429275656	5.01499284700291	4.82703182890097	4.71634951552395	4.08241494918133	4.26072994918632	-0.534219608166862	0.197919160562358	0.499262427957191
Merged-chr2-6259332-4	chr2	6259229	6259429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	MTC|LTR|ERVL-MaLR	-46335.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	5.57004518822641	5.43917410511302	6.0445627063995	6.29589469202419	5.76985099667453	5.39328376569166	5.91134774624014	5.93754657362214	-0.208221270816522	0.514826336309616	0.777276944122371
Merged-chr5-115480275-4	chr5	115480161	115480361	+	912.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001167691, exon 3 of 5)	exon (NM_001167691, exon 3 of 5)	4036.0	NM_001167691	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	4.45075683254212	4.69088474364737	4.70852177905521	4.36092211337475	4.26418036859029	4.14557563397165	4.16267799321943	4.27447727461198	-0.80245359366504	0.0410707130983649	0.204990694034676
Merged-chr10-67114023-4	chr10	67113923	67114123	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13235.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	4.87113201853429	5.28751732804098	4.41020687216484	5.06353924181201	5.52154564705245	5.01070042537804	5.3531698362351	5.05025395626426	0.568610241856895	0.122631644130796	0.388118578824182
Merged-chr11-120631351-4	chr11	120631266	120631466	+	975.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010756, intron 1 of 2)	intron (NM_010756, intron 1 of 2)	2181.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	5.27875335662167	5.20314090765385	5.06820465859065	5.05691525797316	5.01558720012364	5.20815515257623	4.7099573307762	4.72855378341821	-0.4183409821406	0.200826397089545	0.502977555187782
Merged-chr15-27725198-4	chr15	27725105	27725305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43663.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	6.38408952215186	6.06588693758671	6.33138662924999	6.4685088793573	6.42957674306475	6.37274590855737	6.51612144344446	6.308406654998	0.119995585533056	0.5956997910603	0.824111519487797
Merged-chr10-62509370-4	chr10	62509289	62509489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 1 of 3)	MTE2a|LTR|ERVL-MaLR	-1632.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	7.41328515230538	7.20477805127542	7.63331328627828	7.62997528373328	7.05652192270511	7.06575197361568	7.28885616021043	7.20189332318441	-0.448414188036053	0.0222092421168158	0.137344191540646
Merged-chr17-29514605-4	chr17	29514492	29514692	+	846.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23547.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	4.18408176110447	3.92968094794563	4.00890718807145	3.66195981948735	4.04629447324207	4.08384108180541	3.84343139034181	3.90867945396289	0.0877115468944183	0.845573785901594	0.94155619271138
Merged-chr16-93026435-3	chr16	93026340	93026540	+	945.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-200366.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.422344607159	4.30303585271975	4.1624459171724	4.40104964447153	4.49066226334089	4.23809833901571	3.9935082666069	4.15998157102985	-0.207285318353353	0.611095489296441	0.832179032172634
Merged-chr7-128063500-4	chr7	128063384	128063584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008401, intron 1 of 29)	intron (NM_008401, intron 1 of 29)	844.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	6.8626330094459	6.74635223968654	7.08889375096406	7.07437670186812	6.31079791172412	6.32985159041626	6.22666121522736	6.72196791053526	-0.784508245070086	0.000525760048310428	0.00804105596877696
Merged-chr13-46927029-4	chr13	46926909	46927109	+	835.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010617, intron 2 of 37)	intron (NM_010617, intron 2 of 37)	2709.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	4.37629931268858	4.0422314741701	3.96020766836879	3.55783354092234	4.04647679528242	3.67970176298205	3.94320917267015	4.05275591616196	-0.176269249896266	0.719862908157394	0.888028373825666
Merged-chr3-51408970-4	chr3	51408892	51409092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025523)	promoter-TSS (NM_025523)	-37.0	NM_025523	66377.0	Mm.331007	NM_025523	ENSMUSG00000037152	Ndufc1	2310016K22Rik|KFYI	NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1	protein-coding	7.25555981839667	7.07342677370449	6.53482873167933	7.21759495305399	7.39074880354306	7.35749816391214	7.37849636713134	7.18672600994307	0.370307608185526	0.090107828145144	0.327769066820483
Merged-chr6-17643524-1	chr6	17643424	17643624	+	710.0	f1_c57bl6.idr	intron (NM_007604, intron 1 of 9)	intron (NM_007604, intron 1 of 9)	6514.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	2.83037018853385	3.00165544409761	3.10460012001115	2.89286401929633	3.31298203867688	3.27826581738148	3.46260611927806	3.27665722201368	1.4805629248157	0.00781341149742876	0.0660819106165679
Merged-chr4-148164264-4	chr4	148164143	148164343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_176848, exon 2 of 6)	exon (NM_176848, exon 2 of 6)	3575.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	5.9847843374563	5.68244972286337	5.56777501266913	5.73861450643089	5.21606492602382	5.47208587125471	5.89477394290741	5.66940678268767	-0.289266597533695	0.324415728435996	0.636026748591026
Merged-chr1-171171319-3	chr1	171171177	171171377	+	863.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15759.0	NM_001315500	17528.0	Mm.9986	NM_008623	ENSMUSG00000056569	Mpz	Mpp|P-zero|P0	myelin protein zero	protein-coding	3.17551284798643	3.14981415732844	3.32812447157593	2.67420736972319	4.32175971300739	4.09260606651142	4.15156913398267	4.35181628986983	4.24714545342468	4.52554023982721e-13	5.22080111394912e-11
Merged-chr3-109011019-4	chr3	109010929	109011129	+	953.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163567, intron 1 of 10)	intron (NM_001163567, intron 1 of 10)	16578.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	5.40296709568078	5.31013674037647	5.00909565411909	5.07740526780673	5.27768085219812	5.31753578382565	4.75363492989164	4.81436013172132	-0.247173521303094	0.464546538782285	0.745478379589089
Merged-chr4-139587535-4	chr4	139587437	139587637	+	935.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	12817.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	4.10460625955646	3.77827290275621	4.32176668217154	4.12209796555616	4.91957748770861	4.64543779976291	5.12198863930832	5.40596595864722	2.07632554683197	3.49382486397911e-07	1.33559054776138e-05
Merged-chr11-44441430-3	chr11	44441335	44441535	+	842.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29113.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	3.03617535310511	3.016423889775	3.03650826947122	2.39514964850603	4.28220282092813	3.65300340388022	4.28454968531532	4.05380841196763	5.64483062920203	1.21086570523107e-11	1.08140790505198e-09
Merged-chr8-106958391-4	chr8	106958298	106958498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	22648.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	5.64274139083837	6.07170768470324	5.95190181017882	5.89394110980218	5.43583994777204	5.8460708688701	5.641662242748	5.66628798460551	-0.423931024812886	0.112051605996268	0.369950840582101
Merged-chr11-114917289-4	chr11	114917178	114917378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17108.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	6.15161214925989	6.13808017449401	6.31594002998051	6.44351206558628	5.72785165623409	5.37471752983882	5.93448081019765	6.08882004998664	-0.734125550691276	0.00614972869884569	0.055258317728073
Merged-chr12-73598441-4	chr12	73598340	73598540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	13644.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	6.27668323267772	6.34092539983827	6.29681649301827	6.32679785018142	6.34464372329171	6.63126999535452	6.31973625787886	6.40071589800864	0.165992054944792	0.445399953937116	0.731479858046592
Merged-chr15-27675300-4	chr15	27675196	27675396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	6246.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	7.25397545156186	7.24365139341851	6.88271835077525	7.31608165247112	7.11044360766469	7.0740185146826	6.76136449817204	7.10724979861587	-0.232177052481832	0.257442881919097	0.569250985539994
Merged-chr7-99965308-4	chr7	99965205	99965405	+	732.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	15153.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	4.0250509913858	3.90236718738144	3.97974245781957	3.93559062035603	4.16668865656189	3.51661653540334	3.86661659881689	3.92977456610011	-0.154296444945591	0.740640032958636	0.897985196074791
Merged-chr19-37059796-3	chr19	37059667	37059867	+	810.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 8 of 10)	intron (NM_198300, intron 8 of 10)	-114076.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	3.27871289657443	3.17226887910602	3.50204146215955	3.54569169011374	3.16285303076117	3.56502705774813	3.38217252109146	3.39354107324235	-0.0480513595635828	0.929536804843286	0.974529677606963
Merged-chr7-66392718-4	chr7	66392636	66392836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_053080, exon 13 of 13)	exon (NM_053080, exon 13 of 13)	-4395.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	6.98050158677951	7.11903661521207	7.2551400850218	7.18399807147003	6.94320558920797	6.89089181626495	6.84066269219345	6.95107850712429	-0.321682854131566	0.0880922817012843	0.323779847114309
Merged-chr6-116133969-4	chr6	116133868	116134068	+	906.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177412, exon 3 of 6)	exon (NM_177412, exon 3 of 6)	59406.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	4.76584704857357	4.79726788357132	4.33526741437906	4.46166476132765	4.26684692160309	4.14745711966615	4.40536216522704	4.65970730282125	-0.497808988492849	0.210253351887736	0.514707089490205
Merged-chr1-138160501-1	chr1	138160401	138160601	+	564.0	f0_balb.idr	intron (NM_001268286, intron 2 of 28)	Lx9|LINE|L1	14625.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	3.43735845344171	3.31508887958076	3.43782008815736	3.58718752282235	3.23720087377756	3.60778352638847	3.24883870436726	3.59216882678404	-0.0932933987615125	0.860121951379107	0.947123023003096
Merged-chr7-28386187-4	chr7	28386071	28386271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026042, exon 4 of 4)	3' UTR (NM_026042, exon 4 of 4)	6519.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	8.78670833154735	8.75204708832549	8.84308435817083	8.31146637121887	8.81944388931235	8.9581211222567	8.66115468103443	8.52468317949435	0.0851046508613442	0.646611263828545	0.85139884884082
Merged-chr11-96829540-4	chr11	96829449	96829649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130450)	promoter-TSS (NM_001130450)	-47.0	NM_001130450	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	6.05163050235599	6.11887257298165	5.91613391742548	5.9785140554409	6.14152545017944	6.35095961006093	6.27368407790733	6.26571935008271	0.365167221293606	0.108702271574405	0.36398922653218
Merged-chr4-149726083-2	chr4	149725983	149726183	+	625.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177672, exon 6 of 6)	3' UTR (NM_177672, exon 6 of 6)	11687.0	NM_001284273	230917.0	Mm.266704	NM_177672	ENSMUSG00000044700	Tmem201	AV028368|D4Ertd429e|Net5|Samp1	transmembrane protein 201	protein-coding	2.7529041219476	2.9075006369182	3.07050236244578	2.75204125364312	2.92987104246263	2.99813419840898	3.11255505205403	3.06878246898795	0.676876419374854	0.255749372628982	0.56736522248136
Merged-chr4-136286034-4	chr4	136285965	136286165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009557)	promoter-TSS (NM_009557)	-2.0	NM_009557	22704.0	Mm.1504	NM_009557	ENSMUSG00000051351	Zfp46	AI426962|Mlz-4|Zfp-46|Znf436	zinc finger protein 46	protein-coding	7.21232401909707	7.30292110191097	6.99973377754136	6.96156641242958	7.24414718378673	7.31152928569513	7.0635964295159	7.29293650690319	0.151420778892684	0.434591922693945	0.7238182012175
Merged-chr4-129190671-4	chr4	129190578	129190778	+	891.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347203)	promoter-TSS (NM_001347203)	883.0	NM_134151	107271.0	Mm.145488	NM_134151	ENSMUSG00000028811	Yars	AL024047|AU018965	tyrosyl-tRNA synthetase	protein-coding	4.10851050785443	4.33463679311835	3.73197042065109	4.11319975099405	4.15974632979944	4.18557419488077	3.94441408855942	4.32115131625543	0.166736185215256	0.701384236494804	0.87967443506783
Merged-chr5-122652667-3	chr5	122652565	122652765	+	931.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284402, intron 1 of 12)	intron (NM_001284402, intron 1 of 12)	2241.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	4.01174484540689	3.76515344531657	3.92489267715856	4.0467944848313	3.55259572437781	3.54970885330587	3.66104396495988	3.6171396133861	-1.07801407074023	0.0218029624427558	0.135644879268675
Merged-chr5-124424498-3	chr5	124424396	124424596	+	856.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081203, intron 1 of 31)	intron (NM_001081203, intron 1 of 31)	1106.0	NM_001359979	243272.0	Mm.23879	NM_145631	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch 1	protein-coding	3.31668886617083	3.37773385855063	3.2609088847012	3.28983143465265	3.47381488487967	3.18462259534051	3.19094383370644	3.07462389880986	-0.224393415444056	0.683435861668861	0.870321523309355
Merged-chr4-53145984-3	chr4	53145881	53146081	+	861.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	MIRb|SINE|MIR	13914.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	3.42845267813433	3.71845920263281	3.48814731619806	3.35906682915937	3.63668073845719	3.54404283540658	3.82327966826273	3.6492363394027	0.537234982142451	0.271172629731303	0.582973308151507
Merged-chr1-127278235-4	chr1	127278147	127278347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 2 of 17)	intron (NM_145128, intron 2 of 17)	73261.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	5.65486465110486	5.24788933250086	5.19997263514089	5.59952800068261	5.38631614088314	5.47467470449975	5.39277999947098	5.60313979852854	0.0208215184022775	0.943003377402266	0.97939909270739
Merged-chr3-65930471-3	chr3	65930379	65930579	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27770.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	4.54400091416464	4.76755894661017	4.45778919550758	4.31541799405171	4.63805363836892	4.94532534994719	4.39260232446882	4.83993494463033	0.421021101911129	0.261694037982502	0.573611813883764
Merged-chr16-5306798-4	chr16	5306713	5306913	+	923.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-50857.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	4.68204177247624	4.44365604462684	4.88710750326691	4.6585511679634	4.4131274036331	4.61409597289656	4.58509899429265	4.34359864072633	-0.407308718014182	0.265182929915824	0.576956662317123
Merged-chr15-64096232-4	chr15	64096130	64096330	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 26 of 28)	MIR|SINE|MIR	-35782.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	5.12146963730479	5.13679070695174	5.46542858450972	5.32260865630733	5.2596675420096	5.26354915035506	4.58408058906137	4.98029654094976	-0.39978771587276	0.236312612234697	0.546332838321862
Merged-chr4-134946170-3	chr4	134946069	134946269	+	869.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	15189.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	3.23591339032379	3.66455071979291	3.30284660000637	3.06452961719337	3.58384721254443	3.86312543584836	3.67770294208564	3.59169035394966	1.16069076171083	0.0291863443890943	0.16425164510368
Merged-chr11-67125697-3	chr11	67125592	67125792	+	886.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5612.0	NR_038055	74184.0	Mm.162554	NR_038055	ENSMUSG00000087410	2310065F04Rik	linc-Myh	RIKEN cDNA 2310065F04 gene	ncRNA	4.40932606269361	4.54929618670723	4.80716220254188	5.31983863472321	3.69675825867913	4.03018851896927	3.69038177144152	3.95903478481151	-2.5313129390112	1.81349915195778e-07	7.38884122136248e-06
Merged-chr1-89524638-4	chr1	89524577	89524777	+	920.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	69866.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	5.22973419518166	4.4772144169972	4.42881413909394	4.92878655353755	4.51074125544613	4.46303977862022	4.5404859432412	4.55851432050066	-0.630757450920533	0.108190942714361	0.363028478360698
Merged-chr9-88547411-4	chr9	88547318	88547518	+	822.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142943)	promoter-TSS (NM_001142943)	-602.0	NM_001163061	71640.0	Mm.259988	NM_001142943	ENSMUSG00000032425	Zfp949	4930422I07Rik|Nczf	zinc finger protein 949	protein-coding	4.04475091892718	3.88130124539636	3.90199646190726	3.87666089063343	4.01426710400324	3.73924365646624	3.88588341811871	4.211470697192	0.149138078190863	0.733106107118178	0.894380906323954
Merged-chr3-121491076-4	chr3	121490965	121491165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145394, intron 10 of 14)	intron (NM_145394, intron 10 of 14)	41279.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	6.71243923219867	6.80288916236358	6.74280612871786	6.89112327548028	6.65250321319746	6.435233248575	6.64969738593595	6.88731237427818	-0.183745260200539	0.378839096941586	0.681370295695184
Merged-chr15-25272129-4	chr15	25272037	25272237	+	892.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141627.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	4.05516679366203	4.39597662431278	4.00220982806393	4.16860097038159	4.33270023956064	4.18088815205431	4.27555223291492	4.69819276059337	0.528281031166161	0.197699648881384	0.499044730396766
Merged-chr16-20412146-4	chr16	20412055	20412255	+	870.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176839, intron 2 of 6)	intron (NM_176839, intron 2 of 6)	14239.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	4.19698632088312	3.84720515435135	3.88032402266248	4.2729435125249	4.72681177744484	4.46028641014278	4.26903437789787	4.37032938542214	0.955344779774542	0.0252446965733088	0.149442137174946
Merged-chr4-46485833-4	chr4	46485713	46485913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3516.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	6.06258369683025	5.67588025898633	5.71505787003837	5.88432469068405	5.79942704816813	5.9942346708087	6.35134016621112	6.07943972955533	0.349533340156853	0.18488651211481	0.482566571028884
Merged-chr15-79139803-3	chr15	79139704	79139904	+	891.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138581, intron 2 of 6)	B2_Mm2|SINE|B2	1447.0	NM_001310581	27660.0	Mm.390827	NM_138581	ENSMUSG00000033029	1700088E04Rik	ESTJ0827E04	RIKEN cDNA 1700088E04 gene	protein-coding	3.21225927463873	3.35475067240657	3.05505798261154	2.93506579092028	3.94296544844198	4.3933966379029	3.93250169059061	3.85900922929185	2.99841854655463	2.24675228979367e-08	1.11211113515455e-06
Merged-chr12-79319486-4	chr12	79319388	79319588	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 5 of 10)	L1MEc|LINE|L1	22137.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	5.01689558765833	5.4340363518777	4.9033088086814	5.08607005928239	5.27549977328407	5.48266016530367	5.3673226522438	5.1193766824166	0.342480722541438	0.27095264566146	0.58272879364506
Merged-chr15-34398874-1	chr15	34398774	34398974	+	792.0	f0_balb.idr	intron (NM_001358780, intron 6 of 18)	intron (NM_001358780, intron 6 of 18)	-41002.0	NM_001256161	77358.0	Mm.402759	NM_001256161	ENSMUSG00000094447	9430069I07Rik	-	RIKEN cDNA 9430069I07 gene	protein-coding	2.97385061049725	2.65723658723675	2.64419983881095	3.06541644977404	2.23451424701056	2.30494432524879	2.28198532905072	2.36499635243898	-4.36096236677134	6.81918540607709e-05	0.00146952103548035
Merged-chr7-141327682-4	chr7	141327577	141327777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282076)	promoter-TSS (NM_001282076)	48.0	NM_016874	54006.0	Mm.28392	NM_016874	ENSMUSG00000058886	Deaf1	AU042387|C230009B13Rik|NUDR	DEAF1, transcription factor	protein-coding	7.37498655129173	7.33739627190654	6.68824935679857	6.85258842333364	7.59480771836107	7.72679253586681	7.36851320409982	7.26899170173344	0.553338177369095	0.0170433088995595	0.114827034221924
Merged-chr17-73944945-4	chr17	73944846	73945046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	5250.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	5.36520067090442	4.94276314433688	5.71949492524996	5.83828142478872	5.12345160788031	4.78381280118513	5.24930684380996	5.60043151388867	-0.529701476387594	0.148828133791066	0.430746567150915
Merged-chr7-47014774-4	chr7	47014699	47014899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6385.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	7.30630588198398	7.42518622196362	7.19949717896858	7.46335501370899	7.1786216318811	7.23363523716478	7.27114745048089	7.19446142708588	-0.193730712177439	0.282181416748149	0.594347844668181
Merged-chr15-76817087-4	chr15	76816984	76817184	+	900.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	1086.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	4.45357914455212	4.19060014148217	3.90742305748441	4.33117237403401	4.29533827457526	3.97117548206907	4.14610395684491	4.2940146140588	-0.130384996311944	0.756823638562472	0.904525988468637
Merged-chr2-29004177-4	chr2	29004071	29004271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166705, intron 1 of 5)	intron (NM_001166705, intron 1 of 5)	50895.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	5.16215503990185	5.66150147037113	5.6256647118438	5.33577717782964	5.84658711670895	5.66514867589923	5.89334821086927	5.62168471892427	0.522563027592618	0.0611230974921994	0.261412062512604
Merged-chr15-59314935-4	chr15	59314820	59315020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009270)	promoter-TSS (NM_009270)	-172.0	NM_009270	20775.0	Mm.296169	NM_009270	ENSMUSG00000022351	Sqle	AI323792	squalene epoxidase	protein-coding	8.03125523180219	8.37733783275357	8.27861217221627	8.35805290121497	8.15188924346476	8.16131255798112	8.14116661158767	8.06726416957592	-0.182174410542709	0.259485431606107	0.571275665345678
Merged-chr3-135689148-4	chr3	135689022	135689222	+	867.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	2425.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	3.57578768310479	3.88197390469632	4.09470672210707	3.50054044360823	4.13137573513732	4.03414805051431	3.89455551368633	3.95726632600675	0.667044042286141	0.155235328221117	0.440864849070569
Merged-chr11-61990056-2	chr11	61989956	61990156	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	33293.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	2.98706187582294	2.87541261543786	3.33467365867722	2.82291055628696	2.62445150604319	2.6973887048544	2.65793252229356	2.73513977625059	-1.63343755015602	0.0174270270230533	0.11664031276232
Merged-chr15-98776500-3	chr15	98776415	98776615	+	921.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011718, intron 3 of 4)	CpG	1635.0	NM_011718	22410.0	Mm.4709	NM_011718	ENSMUSG00000022996	Wnt10b	Wnt12	wingless-type MMTV integration site family, member 10B	protein-coding	3.51328397499082	3.41888929611747	3.41337341389184	3.3959352375596	3.29641457646455	3.22810846740013	3.17326385149623	3.18215840892294	-0.775732020370763	0.1446324371989	0.423797463707514
Merged-chr12-100024065-3	chr12	100023949	100024149	+	871.488892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	59550.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	3.69155880126008	3.16721915071086	3.50417730751034	4.04395890422428	2.85540453572327	3.05793360242841	3.01079420896871	3.08925274099062	-2.63535769295871	9.13676427675117e-05	0.00188233211130209
Merged-chr15-27213097-3	chr15	27212998	27213198	+	757.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-253579.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	3.68993946856857	3.68674538807451	3.79232502257446	3.99901683554789	3.34447234854487	3.50947443713195	3.7762005998636	3.88422077747726	-0.507115745846784	0.315149170190065	0.627038475150038
Merged-chr2-153586736-4	chr2	153586636	153586836	+	867.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46045.0	NM_001195390	99311.0	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding	4.26338879048529	4.38854606589236	4.06278957109605	4.21614445798057	4.3859426280591	4.48290982440735	4.49590198388338	4.58835839547623	0.583685286404708	0.120759864956554	0.384726811733174
Merged-chr15-102506612-3	chr15	102506514	102506714	+	802.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009582, intron 1 of 13)	B1F|SINE|Alu	4086.0	NM_001358844	26404.0	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	3.22036043591974	3.17497180136072	3.1545773300107	3.18367164631739	3.78484088893955	3.62713327435237	3.63965835953275	3.28216481301898	1.43671429619773	0.00611068172551082	0.0549945902819743
Merged-chr19-37375803-2	chr19	37375703	37375903	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010615)	promoter-TSS (NM_010615)	-600.0	NM_010615	16551.0	Mm.42203	NM_010615	ENSMUSG00000012443	Kif11	Eg5|Kif8|Kifl1|Knsl1	kinesin family member 11	protein-coding	3.35074553442906	3.18026936553598	3.56935345740428	3.04913804466333	3.37066469174552	3.34163571103765	3.45056053889848	3.83643611929986	0.765047774909819	0.166545108797266	0.457880042451936
Merged-chr12-103164737-4	chr12	103164642	103164842	+	911.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081017, intron 42 of 48)	intron (NM_001081017, intron 42 of 48)	77404.0	NM_133364	170952.0	Mm.217019	NM_133364	ENSMUSG00000041669	Prima1	B230212M13Rik|BB120497|PRiMA	proline rich membrane anchor 1	protein-coding	3.96073062467451	3.81336426070292	4.34411954678283	5.00480671191022	4.1166837745716	3.70307980721665	4.47792345549569	4.21071812471512	-0.532638978690105	0.330953760650067	0.642123909101868
Merged-chr2-167692152-5	chr2	167692144	167692344	+	935.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015500, intron 1 of 1)	intron (NR_015500, intron 1 of 1)	1067.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	4.90470267172883	4.30920828157212	5.84511464631557	5.46632274932997	4.90038995917176	4.78390459420126	5.19439201260316	5.76299430812685	-0.0569831757336489	0.93796871521129	0.977460307804652
Merged-chr2-51022675-4	chr2	51022576	51022776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	112992.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	5.87430809208674	6.4706681243762	5.94460205291328	5.85182746637398	5.9286137593154	6.02771022830995	5.95813254481901	5.69335637207107	-0.239040078562042	0.383040448010309	0.684915619085231
Merged-chr15-25047994-4	chr15	25047859	25048059	+	887.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	365805.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	3.47788532648035	3.60028156505234	4.20910410725226	3.9772046983876	4.0312879333596	4.06710956640582	4.02077723620491	4.08095488755674	0.530596732165909	0.270403607703742	0.582291198797182
Merged-chr5-115007206-4	chr5	115007117	115007317	+	880.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4307.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	3.89612346571451	3.89294475493288	4.05099246183071	4.10876946327404	4.17222434157502	4.1246597926068	4.21240421528485	4.31029725194911	0.52866225580575	0.19656753705768	0.49766951412921
Merged-chr2-166875094-4	chr2	166874971	166875171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085495, intron 30 of 38)	intron (NM_001085495, intron 30 of 38)	-31025.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	6.24141272220255	5.72845920026187	5.99209646905182	6.16165545328369	6.0504997151744	5.55472195142452	5.70356104182295	5.94445137178332	-0.333127327011242	0.221379533741784	0.529463056908312
Merged-chr19-23273902-4	chr19	23273781	23273981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153808)	promoter-TSS (NM_153808)	16.0	NM_153808	226026.0	Mm.23267	NM_153808	ENSMUSG00000024943	Smc5	MLZ-453|SMC-5|Smc5l1|mKIAA0594|mSMC5	structural maintenance of chromosomes 5	protein-coding	7.11745923801552	6.90291615182217	7.04810704406069	7.18575531388636	6.92360419497641	7.16257847276703	6.91231619723871	7.0309849625954	-0.0932975544089611	0.630176634556127	0.842667104605937
Merged-chr1-161877748-2	chr1	161877637	161877837	+	978.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1055.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	3.27203225785547	3.1606121277138	3.48583296658778	3.16141590840937	3.10357100657522	3.26170056064636	3.31640580187051	3.53122977714432	0.14294808631977	0.794980976121496	0.92069281162566
Merged-chr6-97179593-3	chr6	97179505	97179705	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081111)	promoter-TSS (NM_001081111)	-481.0	NM_001081111	232286.0	Mm.30893	NM_001081111	ENSMUSG00000030059	Tmf1	7030402D04Rik|Gm153|Tmf1`	TATA element modulatory factor 1	protein-coding	4.57676368150282	4.54727531825379	4.41052756972561	4.50708071550057	4.75161870402784	4.34608664862071	4.59440406909767	4.4938815130204	0.122038760354545	0.736596912554144	0.896043754662457
Merged-chr5-108461264-4	chr5	108461145	108461345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172716)	promoter-TSS (NM_172716)	-87.0	NM_172716	69587.0	Mm.261218	NM_172716	ENSMUSG00000033623	Pcgf3	2310035N15Rik|AI662857|D630042K08Rik|DONG1|E430039C14|RNF3A|Rnf3	polycomb group ring finger 3	protein-coding	7.3794117685574	7.13688486940682	6.74718681117828	6.87620575626552	7.0290265982366	7.0399870963825	7.14652319266762	6.84442666666392	-0.0442343578458155	0.839977259799277	0.939166584762349
Merged-chr19-40588495-4	chr19	40588401	40588601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019698)	promoter-TSS (NM_019698)	-38.0	NM_153554	56454.0	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	7.13816443884666	7.32957886020602	6.61669070841609	6.88686388242281	7.07269501179052	7.09553924250122	7.08089412474317	7.0041408697038	0.0618149231570555	0.777333956154744	0.91315443730424
Merged-chr15-97361177-4	chr15	97361086	97361286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 3 of 5)	intron (NM_172293, intron 3 of 5)	-113899.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	7.08027887751806	7.19108743412945	6.95885597168091	7.35631297011212	6.9399925039441	6.6947466394521	7.10270377396569	6.56467054603929	-0.439910273728941	0.0436356094449177	0.212619047417839
Merged-chr1-155097426-4	chr1	155097327	155097527	+	730.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010500, exon 1 of 1)	3' UTR (NM_010500, exon 1 of 1)	2209.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	3.771444422351	3.85779063723658	3.82580449732225	3.83168672599624	3.86952851807906	4.04913953421453	3.9105934661915	4.14756687997715	0.474894060835524	0.269429990460844	0.581091333848815
Merged-chr13-4609206-4	chr13	4609121	4609321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018859)	promoter-TSS (NM_018859)	-57.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	8.0380114876623	7.72026633354834	7.97890759078871	8.3305837010665	7.90382931901326	7.88919808808999	8.31684391070653	7.76442217293527	-0.0729897477437873	0.724900069388564	0.890536106990138
Merged-chr15-25862990-2	chr15	25862890	25863090	+	806.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 1 of 8)	HAL1|LINE|L1	19692.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	2.88165193468116	2.72982980394741	2.99260757704465	2.80962899602179	2.63060620035082	2.86588116166627	2.68627315402361	2.69325451372435	-0.659180886401908	0.30407515058388	0.616772060395816
Merged-chr7-44952201-4	chr7	44952091	44952291	+	904.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077591, intron 5 of 10)	intron (NM_001077591, intron 5 of 10)	8951.0	NM_011651	22116.0	Mm.84502	NM_011651	ENSMUSG00000059891	Tsks	Stk22s1|Tssks1	testis-specific serine kinase substrate	protein-coding	4.67830190000418	4.47168888341183	4.30370608893833	4.11937364203426	4.60278070805836	4.48115958902438	4.72615628854775	4.67593349853804	0.52577057316273	0.166254038976552	0.45739103711385
Merged-chr9-63990085-3	chr9	63989982	63990182	+	765.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	31977.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	4.14755187840457	4.03683962118129	4.06556111316695	3.5906405857935	3.65742690756959	3.52999797706547	3.76374280180514	3.92792981357715	-0.696279013858079	0.158046049071853	0.444930535204605
Merged-chr1-151595747-2	chr1	151595647	151595847	+	896.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	MLT1A1|LTR|ERVL-MaLR	24374.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	2.71170000186257	2.67362272026307	2.82868376241603	2.65959079256504	2.56443732913849	2.54354931662132	2.57595603548377	2.64825549293725	-0.690940913019662	0.296369745901877	0.608442275779462
Merged-chr4-62654132-3	chr4	62654001	62654201	+	793.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-19873.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	3.18645298627171	3.33639848192218	3.24813402532205	3.49100326852005	3.386000832779	3.29664505556913	3.34981779480936	3.36092490199323	0.058853307336571	0.911477067296019	0.96695373445261
Merged-chr7-127206510-2	chr7	127206410	127206610	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144522, intron 1 of 8)	intron (NM_144522, intron 1 of 8)	1958.0	NM_144522	68449.0	Mm.41420	NM_144522	ENSMUSG00000042492	Tbc1d10b	1110003P22Rik|C87963	TBC1 domain family, member 10b	protein-coding	2.55818886422563	2.35349204066475	2.49343228542889	2.18073221663834	2.33246270536769	2.66650483747636	2.54874748364398	2.55715951227299	0.733245744220051	0.312538596064364	0.624504855620566
Merged-chr14-55793604-4	chr14	55793498	55793698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4741.0	NM_001164108	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	5.95139120391286	6.11939935386159	5.50745453036373	5.86330351562957	6.04457699822767	6.25238813204903	5.68085630858715	6.03351934578049	0.214929840673375	0.4305755217799	0.721139064549168
Merged-chr19-4417390-2	chr19	4417290	4417490	+	818.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20313.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	4.17469101967006	3.49049486303946	3.61706533795979	3.7103893653288	3.70034331445556	4.00233176651385	3.60335074862712	3.82924079575605	0.0563201847459624	0.910086971364261	0.966671146059764
Merged-chr7-102204726-4	chr7	102204620	102204820	+	944.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287166, intron 1 of 19)	MTD|LTR|ERVL-MaLR	5147.0	NM_001287167	269966.0	Mm.439800	NM_022979	ENSMUSG00000063550	Nup98	4732457F17|AI849286|Nup96	nucleoporin 98	protein-coding	5.13030761263554	4.83563228565942	4.69389136313651	4.26822180123341	5.21090038441224	5.10665093635652	5.27693124831023	5.2168724669067	0.897286838731243	0.0124686750780212	0.0922565304967229
Merged-chr6-115995107-4	chr6	115995049	115995249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026376)	promoter-TSS (NM_026376)	-144.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	6.77466724947645	6.63053668554841	7.00520524725854	6.28045521398766	6.39657587086274	7.07144711362064	6.71315354321278	6.65390899152813	0.054441509764506	0.833273620035505	0.936237948428556
Merged-chr3-144705296-4	chr3	144705180	144705380	+	775.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 5 of 10)	intron (NM_001282037, intron 5 of 10)	15055.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	4.06439707710771	3.76982521968028	3.97334711364603	3.45862131966369	3.99102023263662	4.09718349781534	3.95593462906802	3.92256265883782	0.484787544670302	0.299568666244623	0.611816257004375
Merged-chr11-100298439-3	chr11	100298337	100298537	+	767.472229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21512.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	3.89773878056863	3.76825707769306	3.23895914292103	3.2919532343531	3.64701150978206	3.88334811538697	3.54058328389896	3.49525469375308	0.229407805605295	0.673057892333022	0.865589526337487
Merged-chr8-106683545-4	chr8	106683423	106683623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173037, intron 1 of 17)	intron (NM_173037, intron 1 of 17)	455.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	5.69474399663129	6.24274526971319	5.82304031594722	5.76042737723968	5.69862774226374	5.73348856251418	6.20085957772966	6.01987369272224	0.0455199870378082	0.870724985257007	0.951430072143722
Merged-chr1-152168550-4	chr1	152168421	152168621	+	895.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78201.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	4.47444524521879	4.15966083247387	5.25206444662638	5.12337179413471	4.26802212749325	4.08668145169656	4.06153781004504	4.51441501421397	-1.31040717867933	0.00516028240861566	0.0486430594044304
Merged-chr7-68113374-4	chr7	68113274	68113474	+	817.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	AT_rich|Low_complexity|Low_complexity	150859.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	3.65680001261914	4.04450343654319	3.97507947888786	4.09334647879182	3.70137671256908	3.64899740654886	4.17067414795288	3.97267117213111	-0.201909053521159	0.669821304921465	0.863656126023693
Merged-chr6-72146602-3	chr6	72146496	72146696	+	720.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 4 of 6)	intron (NM_001035228, intron 4 of 6)	-23399.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	3.39903788626104	2.99883943419253	3.28137264073182	3.26196664311434	3.33108758005227	3.39605865593286	3.59155753667866	3.78365628046413	1.00504275027678	0.0639016213030053	0.268535452988937
Merged-chr16-91347587-4	chr16	91347470	91347670	+	957.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25213.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	4.10445453252044	3.99183825938585	4.20159929631816	4.40499539026696	4.38971039336618	4.37381313885987	4.22861338258697	4.37249872487693	0.343963382474812	0.392825483322177	0.692163706131799
Merged-chr1-152531759-6	chr1	152531568	152531768	+	977.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 13 of 17)	intron (NM_016846, intron 13 of 17)	93549.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.75976481594505	4.79669674913225	5.29757186644423	5.30580513782482	4.68307483581372	4.7655784677285	4.96488789433813	5.51791943186361	-0.0958793407131976	0.803355704483798	0.924122552203287
Merged-chr12-100106497-4	chr12	100106410	100106610	+	925.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5821.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	4.4852834770192	4.29088611709423	3.85599756738705	4.34776414566681	4.33646201764992	4.15528509199694	4.30304260692708	4.69378848554721	0.280727212512104	0.50777898234908	0.773066972913507
Merged-chr14-61684376-4	chr14	61684265	61684465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1992.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	5.49436678846722	5.69442836924273	5.30567919415209	5.53124802494461	5.80562655056791	5.8607481369785	5.79970982709047	5.97401160246334	0.563957543430265	0.0302850647408132	0.168305795064518
Merged-chr13-3634070-4	chr13	3633991	3634191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001267724)	promoter-TSS (NM_001267724)	59.0	NM_001267724	142688.0	Mm.253061	NM_178283	ENSMUSG00000033781	Asb13	2210015B19Rik|6430573K02Rik|Asb-13|C85285	ankyrin repeat and SOCS box-containing 13	protein-coding	7.17951316413031	7.14377032249068	7.28821548682949	7.52054429360213	7.18663313885295	6.8391416435086	7.36924485571409	6.87274634389115	-0.285088507802943	0.185713588711014	0.483585287292957
Merged-chr4-53384949-4	chr4	53384833	53385033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55480.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	6.44729018762619	6.70700833948072	6.65276806789415	6.32456852226099	6.32563544346339	6.48057499956084	6.23298382636554	6.37366026980697	-0.263258217611913	0.244234232231289	0.555357263392994
Merged-chr8-123949340-4	chr8	123949246	123949446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172288)	promoter-TSS (NM_172288)	-81.0	NM_172288	234865.0	Mm.267812	NM_172288	ENSMUSG00000039509	Nup133	mermaid	nucleoporin 133	protein-coding	6.80372796976703	6.58018203490069	6.00512437462305	6.27942946979806	6.48691037014791	6.89893705315687	6.19929276419029	6.94860077156243	0.315631613518183	0.26007954219737	0.571876115475783
Merged-chr9-64775666-4	chr9	64775568	64775768	+	965.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35343.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	5.64917847589596	5.40115396167795	6.07322949875661	6.08108375921613	4.392045697698	5.23196424524647	5.26577131985402	4.83998120415207	-1.5594763247838	2.4002724966721e-05	0.000597792148497632
Merged-chr7-25652563-3	chr7	25652462	25652662	+	861.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007533, intron 1 of 8)	intron (NM_007533, intron 1 of 8)	6199.0	NM_007533	12039.0	Mm.25848	NM_007533	ENSMUSG00000060376	Bckdha	-	branched chain ketoacid dehydrogenase E1, alpha polypeptide	protein-coding	3.1151408391985	3.16259738326175	3.17398559851013	3.30980018645067	3.20534237614899	3.02844816649595	2.98159259015369	3.28129310415701	-0.259200131527524	0.647433082592235	0.851667779256884
Merged-chr11-51681773-4	chr11	51681613	51681813	+	848.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6921.0	NM_025319	66050.0	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	3.83564918854674	3.84865378913442	3.6793264534059	3.67744072089608	3.67660769041505	4.18554908939612	3.5503590138038	3.73164085632672	0.129640187715529	0.787025492766039	0.917287870668466
Merged-chr12-104315779-3	chr12	104315675	104315875	+	923.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101472, intron 1 of 3)	intron (NM_001101472, intron 1 of 3)	1205.0	NM_001101472	238395.0	Mm.436975	NM_001101472	ENSMUSG00000079013	Serpina3j	AI506554|EG238395|Gm4931	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3J	protein-coding	4.45031907077606	4.37744056172203	4.12009571974466	4.69909215193584	3.85782060698494	3.72859382091109	4.00511615660414	3.79885033428512	-1.5606118715243	0.000511329872497447	0.00785411070230811
Merged-chr11-6389147-4	chr11	6389050	6389250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5975.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	7.86803385286208	8.24895996311345	8.27182663779732	7.96639809294961	7.84347892634428	7.93677628684828	8.11284903217541	7.88644419243803	-0.194229744483364	0.277511094059603	0.589658263353189
Merged-chr4-136143768-4	chr4	136143675	136143875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008321)	promoter-TSS (NM_008321)	-47.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	8.8077442296844	8.92894533071276	8.97892816917237	8.6135613698819	8.77770648347604	8.92481179417017	9.0723732895064	8.85890675038469	0.0950104825859299	0.55493412708827	0.801177563425742
Merged-chr11-52004240-4	chr11	52004148	52004348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153785)	promoter-TSS (NM_153785)	27.0	NM_001166653	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	7.76416110189986	7.8692329887805	7.24573170673776	7.53073398827778	7.71717626325356	7.76005639360347	8.00326435822363	7.53181991069084	0.18341485239244	0.374380458715304	0.677784078373359
Merged-chr8-111662636-3	chr8	111662545	111662745	+	796.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011742, intron 2 of 3)	MERVL_2A-int|LTR|ERVL	19202.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	3.42287958381237	4.0289176155442	3.81325625097666	3.64011683684785	3.95192107324611	3.71929630785766	3.69767444922822	3.65699119564894	0.0731363424495705	0.882227083569171	0.955654262385787
Merged-chr9-57640641-4	chr9	57640560	57640760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	4993.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	6.7915390868137	6.33097201134595	7.23853719674613	7.24202183083496	6.12694238477072	6.0747616150585	6.73033926523073	6.70267946374947	-0.735093969035703	0.0123116917173401	0.0915231232113367
Merged-chr5-124085005-4	chr5	124084910	124085110	+	824.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019875, intron 2 of 11)	intron (NM_019875, intron 2 of 11)	10788.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	4.08875055714929	4.15495112495786	3.76980498498511	3.84707856271995	3.99755037807388	4.39347583562908	4.36241220984457	4.03878246584188	0.610069959768831	0.158429595009539	0.445250528810519
Merged-chr14-46832118-4	chr14	46832005	46832205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360455)	promoter-TSS (NM_001360455)	-29.0	NM_001360454	68755.0	Mm.343809	NM_026832	ENSMUSG00000055128	Cgrrf1	1110038G02Rik|1810009H17Rik|CGR19	cell growth regulator with ring finger domain 1	protein-coding	7.96065742248677	7.98083566594728	7.97567326239753	7.89093169585172	7.94734965702526	7.84600512920123	8.07855045975203	7.68045936072487	-0.0662688423798529	0.693498181762896	0.875361442068791
Merged-chr2-170326999-4	chr2	170326901	170327101	+	962.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29360.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	5.73501399280897	5.37340523219543	5.75932704024728	5.97997452400897	5.72019117110343	5.25488008300361	4.96757874117138	5.7780640234995	-0.432871915041207	0.191538941734053	0.490934932097934
Merged-chr14-45685447-4	chr14	45685345	45685545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27302.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	7.50778841220948	7.95575357118672	7.71738901290184	7.30495958054186	7.32371179127194	7.36851759397549	7.11919527758217	7.08850918074916	-0.542612793782248	0.0109797305197256	0.0843707479934739
Merged-chr17-6655372-4	chr17	6655242	6655442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166630, intron 1 of 4).2	CpG	489.0	NM_001166630	100040563.0	Mm.457381	NM_001166630	ENSMUSG00000000579	Dynlt1c	100040603|Dynlt1d	dynein light chain Tctex-type 1C	protein-coding	6.34502874635352	6.25431394117775	6.21955713057328	5.56139043234144	6.1640631477967	6.19021392491039	6.45874661493096	6.00896801746204	0.156969669323223	0.579107000980644	0.815233759185512
Merged-chr17-5846196-4	chr17	5846100	5846300	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 1 of 17)	L1MEd|LINE|L1	4820.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	4.89874898242	4.94680504325318	4.93502075139069	5.67952560845532	4.95761937356733	4.45424168420878	4.76434350277762	4.61676531898771	-0.912758073120325	0.0206684816754905	0.130918090263604
Merged-chr4-83306928-4	chr4	83306836	83307036	+	944.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	RSINE1|SINE|B4	17253.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	4.99018540040145	4.62716673435187	5.36911752256827	5.45242719784682	5.45835221935446	4.79618481143761	5.19905168686864	5.36533031982317	0.13667069108651	0.711817804832885	0.884648604581564
Merged-chr12-65172764-4	chr12	65172650	65172850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172578)	promoter-TSS (NM_172578)	-170.0	NM_172578	217653.0	Mm.21144	NM_172578	ENSMUSG00000047534	Mis18bp1	6720403H11|C79407|Knl2|mKIAA1903	MIS18 binding protein 1	protein-coding	8.20384948145078	8.36367266563562	8.48518990570104	8.30484628057194	8.23079300242054	8.30822386159897	8.47911959882626	8.10581363638046	-0.0699901711534188	0.671052715496696	0.864491081523553
Merged-chr10-96686289-4	chr10	96686199	96686399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69298.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	7.8150910924764	7.68217621596083	7.69185954143334	7.63049960819336	7.63157840069191	7.37457449747898	7.82916324046431	7.70286910195565	-0.0732220105567948	0.681858009164333	0.869647747559641
Merged-chr3-89251482-3	chr3	89251441	89251641	+	797.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5068.0	NM_001310625	66059.0	Mm.177991	NM_025327	ENSMUSG00000042747	Krtcap2	0610010I12Rik|Kcp2	keratinocyte associated protein 2	protein-coding	3.5436239934653	3.21618427184071	3.27955304497685	3.24779848360787	2.99209963629674	3.39347457499349	3.4802358544353	3.21783276576998	-0.164691113419053	0.769401693034037	0.909742530773464
Merged-chr2-168170409-4	chr2	168170313	168170513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-15900.0	NR_040327	77017.0	Mm.407822	NR_040327	ENSMUSG00000087648	E130018N17Rik	-	RIKEN cDNA E130018N17 gene	ncRNA	7.91784315267425	7.72508199825908	7.98073814934269	7.90953704643082	7.82881947805453	7.63570703114468	7.9424355131891	7.67504686382529	-0.138732238150957	0.418436268290898	0.711931976817109
Merged-chr17-17624033-4	chr17	17623944	17624144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	CpG	445.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	5.26022351599598	5.24263941847245	5.41420477174389	5.53535516300271	5.46218432897655	5.3374571345551	5.4702963485366	5.73824259006067	0.223556939296751	0.435629768835305	0.724744835370587
Merged-chr10-74104697-4	chr10	74104598	74104798	+	917.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142748, intron 3 of 25)	intron (NM_001142748, intron 3 of 25)	282831.0	NM_001142735	11994.0	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|Gm9815|Ush1f|av|nmf19|roda	protocadherin 15	protein-coding	4.29364745764137	4.8296678068714	4.38447511648605	4.62214706055693	4.20585212551207	4.3747984053855	4.59993483356328	3.97759833007248	-0.579248837216368	0.164206243804909	0.454292452883614
Merged-chr7-80425714-4	chr7	80425605	80425805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-20269.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	6.01762600417809	5.86035337830206	5.99813809555562	6.2179735791227	5.58410140920169	5.0740390798868	5.81410133778625	6.07403995307046	-0.563354025676228	0.0647908222517024	0.270690023892348
Merged-chr1-20939239-4	chr1	20939150	20939350	+	858.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028829, exon 3 of 3)	3' UTR (NM_028829, exon 3 of 3)	-12376.0	NM_027974	71877.0	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	4.71576998357056	5.0864314732045	4.47289342911443	4.74350185735157	4.55155377819485	4.41013819748352	4.40799009662127	4.71341184164139	-0.536852876528541	0.150251827259717	0.432862361299688
Merged-chr3-94431193-4	chr3	94431093	94431293	+	942.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001357711, exon 14 of 14)	3' UTR (NM_001357711, exon 14 of 14)	5458.0	NM_016901	53814.0	Mm.440422	NM_016901	ENSMUSG00000028141	Oaz3	AZ3|Az-3|Oaz-t	ornithine decarboxylase antizyme 3	protein-coding	4.76280976606418	5.05455170801522	5.49115179632584	5.89243778523184	4.88306845215601	4.81054492015256	5.08684229017978	5.53654970429574	-0.500971666407783	0.213872067356176	0.519418016486679
Merged-chr14-27351198-3	chr14	27351103	27351303	+	939.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-10186.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	4.27357089575386	3.80656812693246	4.45889267566555	4.18409533569206	3.77212887349102	3.97544574274001	3.99209322530321	3.79456052780093	-0.849367343009836	0.0613727291354044	0.2621248417572
Merged-chr1-84407093-4	chr1	84406982	84407182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 9 of 12)	intron (NM_152915, intron 9 of 12)	-122437.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	7.80010579088376	7.48495541173396	7.43546364695473	7.63019554502069	7.46253511550084	7.79620156174718	7.67195235290139	7.34868130552486	-0.0246694188540895	0.897697080969053	0.961783547403113
Merged-chr8-128357253-4	chr8	128357161	128357361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1812.0	NM_001358959	18186.0	Mm.271745	NM_008737	ENSMUSG00000025810	Nrp1	C530029I03|NP-1|NPN-1|Npn1|Nrp	neuropilin 1	protein-coding	5.81133879870801	5.65215285438733	6.27024186387871	6.06646346801475	6.03762493121199	6.03788174274753	6.12942453711751	5.95037743142455	0.103040609242051	0.690085228818818	0.873711152914966
Merged-chr4-102605954-3	chr4	102605839	102606039	+	852.572205	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177980, exon 10 of 10)	3' UTR (NM_001177980, exon 10 of 10)	16096.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.93710693752525	3.97063079422975	4.77616995721193	4.78469131231353	3.2058511996525	3.71122623317388	3.42309388858395	3.43298475576683	-3.97552114509161	8.53341073725403e-10	5.54702870198178e-08
Merged-chr4-99120518-4	chr4	99120420	99120620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026082, intron 1 of 47)	CpG	395.0	NM_001290636	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	5.59901278247276	5.72629640374565	6.01069491746365	6.10265357371985	5.83876082817713	5.88550473982432	5.78042849374166	5.96450762762147	-0.0395487508842246	0.880727239568171	0.95522161554859
Merged-chr6-38533151-2	chr6	38533051	38533251	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1710.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	4.05802281879732	4.26797915111078	4.05859873365078	4.16200053751855	4.07716517246936	4.38200846163832	4.47924729007568	4.67146522035394	0.650768299481135	0.11107928864747	0.368207175831894
Merged-chr7-139248746-1	chr7	139248646	139248846	+	991.0	f0_balb.idr	intron (NM_001098636, intron 1 of 2)	CpG	264.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	4.54134364305024	4.62751186540021	4.88006635410095	4.53836791942619	5.63494245406825	5.1950424400438	4.92827354849236	5.1741885577184	1.22670407721056	0.000358863439937748	0.00587342855629547
Merged-chr2-39008069-4	chr2	39007968	39008168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028809)	promoter-TSS (NM_028809)	-71.0	NM_028809	74192.0	Mm.38155	NM_028809	ENSMUSG00000026755	Arpc5l	2010015J01Rik|AI852867|ARC16-2|AW555592|AW742746	actin related protein 2/3 complex, subunit 5-like	protein-coding	8.20867728967475	7.79184149714667	8.06346860303074	8.21480817141973	7.86207268499093	8.06013610824925	8.28117656149034	7.8468965661139	-0.0785882911988363	0.677937940649807	0.867957131403565
Merged-chr7-122189697-2	chr7	122189597	122189797	+	860.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3466.0	NM_001316689	26918.0	Mm.20452	NM_012016	ENSMUSG00000030866	Ern2	Ern1|Ire1|Ire1b|ire1-beta|mIre1	endoplasmic reticulum (ER) to nucleus signalling 2	protein-coding	3.11441208105666	2.95513835196981	3.17202040833394	2.87161943051549	3.34020670687007	3.10158981389649	3.15949409810719	2.92513064052841	0.489800382026291	0.402737802861412	0.700189884709032
Merged-chr4-88033413-4	chr4	88033324	88033524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027326)	promoter-TSS (NM_027326)	-17.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	7.9497866329685	7.7365235700184	7.78851157072353	8.14890077551734	7.82888606738496	7.89303765453899	8.29141437718533	7.587166440695	0.00358569807471659	0.986216655923205	0.994910715477668
Merged-chr3-108086373-2	chr3	108086273	108086473	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346665)	promoter-TSS (NM_001346665)	293.0	NM_028779	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	4.23531670020822	4.53348950010853	4.45912705194841	3.8719150753592	4.59773092791192	4.45942825590893	4.62644655710324	4.37164739322076	0.549885285583629	0.18155717985881	0.478232668725227
Merged-chr9-48494536-4	chr9	48494420	48494620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004191)	promoter-TSS (NM_001004191)	810.0	NM_001326355	67010.0	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	6.49924642485628	6.53696804430852	6.17061277649416	5.91252408290738	5.96901627485575	5.66906440929073	5.49106880377547	5.48308016016289	-0.973220214699597	0.000906862355676846	0.0124564947153073
Merged-chr17-34024738-4	chr17	34024637	34024837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009066)	promoter-TSS (NM_009066)	-57.0	NM_009066	19763.0	Mm.20343	NM_009066	ENSMUSG00000024325	Ring1	Ring1A	ring finger protein 1	protein-coding	6.19662514527611	5.95756723734072	5.86306974464561	5.83262540076531	6.69295580847477	6.39291873668914	6.31296787196626	6.32347328106435	0.747259649432384	0.00185890222986442	0.0221151264949891
Merged-chr1-37868010-6	chr1	37867924	37868124	+	777.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2726.0	NM_001290720	211484.0	Mm.332756	NM_207228	ENSMUSG00000060771	Tsga10	4933432N21Rik|AI843383|Gm217|Mtsga10	testis specific 10	protein-coding	3.34502403029018	3.28052528730256	3.45681421108972	3.31026119693644	3.30368112254966	3.45927214062451	3.63740654848807	3.28435222216693	0.277667857433075	0.590819940467075	0.821283214886845
Merged-chr14-27335957-4	chr14	27335832	27336032	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289687)	promoter-TSS (NM_001289687)	-105.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	5.62778745714947	5.43104459054299	5.60411290532298	5.53531606202965	5.1517755348645	5.50224502601228	5.60016624800378	5.04763314800449	-0.371374500373584	0.208975802489489	0.513362852300236
Merged-chr15-59774214-3	chr15	59774105	59774305	+	940.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20754.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	4.59974067557581	4.28010194758452	5.3959919088422	5.01381490556037	4.15333816020162	4.60073164692454	5.12036961032141	4.55428195510339	-0.485146874380472	0.294141196745636	0.606508581783245
Merged-chr13-104153022-1	chr13	104152922	104153122	+	623.5	f0_balb.idr	intron (NM_025879, intron 7 of 12)	intron (NM_025879, intron 7 of 12)	25444.0	NM_025879	66975.0	Mm.272541	NM_025879	ENSMUSG00000021711	Trappc13	2410002O22Rik|2610524F24Rik|AI451892|AU017229	trafficking protein particle complex 13	protein-coding	2.64238834328509	2.62363848658103	2.46834904535056	2.52738556013671	2.07440464931059	2.2133594712876	2.10894958793082	2.19099959665835	-3.40768719001143	0.000875074136974863	0.0120968929881013
Merged-chr8-91377016-4	chr8	91376918	91377118	+	913.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011936, intron 1 of 8)	intron (NM_011936, intron 1 of 8)	63493.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	3.8098017266888	3.81975619082098	4.32346600117244	4.18905271776681	4.25029932610953	3.67843573921813	4.05152678100468	4.28170657430318	0.0853620954882146	0.856437136859518	0.945966867639044
Merged-chr8-115420612-2	chr8	115420523	115420723	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	286271.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	4.1375248998924	4.56445905176377	4.18943983410485	4.10790804462696	4.54467635407425	4.63257300792166	4.59263739917657	4.41688298886375	0.676195863864678	0.0785295589615849	0.303249263627235
Merged-chr12-76615023-4	chr12	76614913	76615113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 15 of 35)	ORR1D2|LTR|ERVL-MaLR	-67088.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	6.94841775915132	6.43620008775513	7.02468341240527	7.23769418507313	6.98302763197745	6.96183374054698	6.97706205096531	7.06734460602705	0.0591728508970716	0.79773813024676	0.921862017583033
Merged-chr3-121293037-2	chr3	121292937	121293137	+	884.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155539, intron 1 of 2)	intron (NR_155539, intron 1 of 2)	1297.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	2.6817135409622	2.7188154044247	2.74997412320126	2.36616079869812	2.89824952661378	3.04710627098616	2.80424560417672	2.93351050528491	1.42388542987302	0.0316366357417209	0.173450671435062
Merged-chr7-6174635-4	chr7	6174537	6174737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146024, intron 2 of 4)	B2_Mm2|SINE|B2	2124.0	NM_001146024	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	5.6359376867998	5.91274623664457	5.71245626304371	5.02829444764455	5.70838269581563	5.83736863277679	5.38344650713432	5.80243765825402	0.160072271229044	0.619411093105164	0.836564716145537
Merged-chr11-98673331-4	chr11	98673209	98673409	+	910.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021347, intron 9 of 11)	intron (NM_021347, intron 9 of 11)	8958.0	NM_021347	57911.0	Mm.458085	NM_021347	ENSMUSG00000017204	Gsdma	BB149167|Gsdm|Gsdm1|Gsdma1|H312E	gasdermin A	protein-coding	4.28831753785098	4.35814948926626	3.94347485147159	4.28911810426285	4.4258056451368	4.17577009496187	4.2698387707021	4.28630285561748	0.153966133924302	0.699805825045732	0.87891235524103
Merged-chr1-167415060-4	chr1	167414944	167415144	+	692.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21247.0	NM_025569	66447.0	Mm.218286	NM_025569	ENSMUSG00000026688	Mgst3	2010012L10Rik|2010306B17Rik|2700004G04Rik|AA516734|GST-III	microsomal glutathione S-transferase 3	protein-coding	4.02558303538902	4.1617598567376	3.82207658256717	3.60952612422227	4.1711374518222	4.15025806362499	3.91175865216738	4.02373649078892	0.43641634527844	0.333049838533347	0.643946257670112
Merged-chr5-121191421-4	chr5	121191399	121191599	+	993.53125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109992)	promoter-TSS (NM_001109992)	-102.0	NM_011202	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	5.60930070523194	5.76271435515402	5.2465460710353	5.452780209666	5.95130645285612	5.58799343854692	5.55549513361217	5.84561611319686	0.377592752625712	0.181545687813049	0.478232668725227
Merged-chr4-155733394-4	chr4	155733276	155733476	+	617.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026899, intron 4 of 4)	intron (NM_026899, intron 4 of 4)	-1428.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	3.27787426944292	2.93788100392683	3.08822489073245	3.10068933429275	3.4968776173486	3.39275174598862	3.42974513594912	3.63425949375781	1.39983642939781	0.00905966555308331	0.0734532110032242
Merged-chr15-97164839-4	chr15	97164746	97164946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155278, intron 2 of 3)	intron (NR_155278, intron 2 of 3)	2398.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	7.35008205154595	7.24125247952415	7.73383422220589	7.71885672994778	7.40693060195615	7.14334788627628	7.54175955721739	7.77368273163011	-0.0632022844597505	0.772106711940001	0.910726384110984
Merged-chr4-118179708-4	chr4	118179638	118179838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161823, intron 1 of 21)	intron (NM_001161823, intron 1 of 21)	305.0	NM_172382	230674.0	Mm.234234	NM_172382	ENSMUSG00000033326	Kdm4a	D4Ertd222e|JHDM3A|Jmjd2|Jmjd2a|mKIAA0677	lysine (K)-specific demethylase 4A	protein-coding	7.87409910073889	7.72413127558826	7.43630322438712	7.78211177186066	7.94124400829386	7.92291166299369	7.94815866885583	7.95428324179181	0.290427661519446	0.0909400616661951	0.329516526641117
Merged-chr5-110284732-4	chr5	110284615	110284815	+	919.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008993, intron 1 of 4)	MTE2b|LTR|ERVL-MaLR	1453.0	NM_008993	19301.0	Mm.21853	NM_008993	ENSMUSG00000029499	Pxmp2	22kDa|PMP22	peroxisomal membrane protein 2	protein-coding	4.44881001247947	4.18393314765912	4.3167988904467	4.35237563380326	4.51410058817367	4.49193471985089	4.4701355483902	4.80888144485365	0.567072420867929	0.125313812372701	0.392906674142633
Merged-chr18-9494004-3	chr18	9493896	9494096	+	965.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43842.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	4.89967289090745	4.19249540524101	4.80424181691321	4.92273369237662	4.5635931828406	4.18364970210038	4.0401223156678	4.73244552071649	-0.714857970860401	0.104099956716826	0.354583472227925
Merged-chr5-45855730-4	chr5	45855615	45855815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359873, intron 1 of 4)	intron (NM_001359873, intron 1 of 4)	837.0	NM_001359872	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	5.26631310793824	5.52878066229411	5.42388988428808	5.50101617601421	5.80382470960957	5.23179752689084	5.83685205099132	5.55950387197811	0.340955119870954	0.239651285422891	0.550138318609215
Merged-chr15-99702502-4	chr15	99702415	99702615	+	929.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031842, intron 1 of 12)	intron (NM_031842, intron 1 of 12)	228.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	4.75941380211411	4.67469157584242	4.60809717618895	4.62795182979014	4.4500585213784	4.78100793302461	4.70145685648417	4.60512796306894	-0.0750782630735048	0.828875479326921	0.934306559443661
Merged-chr14-63131886-4	chr14	63131792	63131992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	9430.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	6.09172151503831	6.03092675361991	5.87213804665696	6.03574555838198	6.24104090345917	6.24698588684856	5.91221250532618	5.74147355635454	0.0748387419941705	0.767334523312137	0.909004900573458
Merged-chr3-96728439-4	chr3	96728338	96728538	+	941.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028925)	promoter-TSS (NM_028925)	827.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	4.52726305808634	4.36484910532823	4.44869799221463	3.97706019736449	4.49570666226078	4.53725301703523	4.54404402835356	4.12249596588839	0.254041553127301	0.535970299376794	0.790096923254443
Merged-chr9-53387464-5	chr9	53387413	53387613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212445, intron 1 of 7)	URR1A|DNA|hAT-Charlie	3490.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	6.02524779001119	5.80102190539184	6.44534011567944	6.25691085553009	6.09986480676467	5.74279273586112	6.03781478642235	6.12570806609503	-0.219854500370848	0.405008469407743	0.702045584686304
Merged-chr4-59372881-3	chr4	59372806	59373006	+	773.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 8 of 16)	intron (NM_001163288, intron 8 of 16)	65727.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	3.45906840308924	3.23336216572261	3.55773277095922	3.63626901941844	3.12487627327129	3.07786411607746	3.16436881058996	3.29466451765286	-1.19458490929935	0.0331333602663221	0.178761422754229
Merged-chr6-13599937-3	chr6	13599849	13600049	+	723.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155435, intron 1 of 3)	intron (NR_155435, intron 1 of 3)	8149.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	3.0809705219611	3.56207042725622	3.46429568107192	3.39243547953804	3.70865817460183	3.63455807888702	3.50441928571433	3.40584796742207	0.605520073387814	0.249728087274888	0.560773970743009
Merged-chr4-115980864-4	chr4	115980787	115980987	+	904.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37037.0	NM_010173	14073.0	Mm.256025	NM_010173	ENSMUSG00000034171	Faah	AW412498	fatty acid amide hydrolase	protein-coding	4.16035496919791	3.99517441385171	4.25550871738336	3.92646586466659	4.6645973936922	4.07414722611733	4.71766078315426	4.38263694660748	0.998355785317507	0.0154586196307968	0.107140125287291
Merged-chr7-30860110-3	chr7	30860030	30860230	+	716.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_194057)	TTS (NM_194057)	1340.0	NM_194057	233081.0	Mm.425422	NM_194057	ENSMUSG00000044453	Ffar1	Gpr40	free fatty acid receptor 1	protein-coding	3.19309264779225	3.15410482342297	3.19346236304499	2.90861924978691	3.73367653350074	4.0990992665843	3.59793673009228	3.71094458183745	2.42012170459769	4.68772700818159e-06	0.000140020025478538
Merged-chr3-90509540-4	chr3	90509433	90509633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293781)	promoter-TSS (NM_001293781)	-35.0	NM_001293778	66511.0	Mm.154136	NM_023215	ENSMUSG00000001017	Chtop	2500003M10Rik|Fop|Srag	chromatin target of PRMT1	protein-coding	7.57609708676333	7.8210246277446	7.58619184320598	7.28150810628239	7.5740668909637	7.78943227147642	7.400422145159	7.65754561349644	0.050725443839705	0.798266358944726	0.921955533143952
Merged-chr8-94954956-1	chr8	94954856	94955056	+	569.0	f0_balb.idr	Intergenic	Intergenic	-22153.0	NM_001198894	14766.0	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	3.82171299180135	3.87320115926886	3.71909049277009	3.31690152251121	3.66280337737558	3.78415036985562	4.07004836796226	3.76949883871457	0.411587451994004	0.408135841143342	0.704191133871672
Merged-chr15-51449845-4	chr15	51449739	51449939	+	901.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-54229.0	NR_045092	100502643.0	Mm.131987	NR_045092	ENSMUSG00000115654	Gm19303	-	predicted gene, 19303	ncRNA	4.31076587366474	4.30945505338455	4.87343126319115	4.93587489632779	4.25195007192368	4.39028783901668	4.91202543406086	4.87006172386924	-0.0332972667711456	0.938268249716651	0.977575065453423
Merged-chr2-137869759-3	chr2	137869660	137869860	+	728.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-386824.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	3.70608153447491	3.11798977541052	3.33850957096261	3.93595724965004	3.3194616175319	3.45244208332455	3.32664379666438	3.45300173311317	-0.623380013811581	0.2827824718455	0.594980004832718
Merged-chr11-97489777-3	chr11	97489679	97489879	+	813.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021493, intron 15 of 18)	intron (NM_021493, intron 15 of 18)	10561.0	NM_001289118	100141474.0	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	3.45531177703719	3.27777734549346	3.34968060017184	3.11332692865501	3.42894732444432	3.14816553240681	3.09850607547099	3.63888215382784	0.196452363253974	0.727993443670127	0.89177588928748
Merged-chr6-52213407-3	chr6	52213268	52213468	+	790.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010452)	promoter-TSS (NM_010452)	-301.0	NM_010452	15400.0	Mm.71533	NM_010452	ENSMUSG00000079560	Hoxa3	Hox-1.5|Mo-10	homeobox A3	protein-coding	3.07416517336999	2.91155085310798	3.12968460414545	2.73163925776009	3.02961123952905	2.93509865255922	2.74978616830356	3.07286982392972	-0.0308787783713781	0.960453790734416	0.985883800393479
Merged-chr10-79695394-4	chr10	79695276	79695476	+	956.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008504)	TTS (NM_008504)	1550.0	NM_001302499	16904.0	Mm.378960	NM_008504	ENSMUSG00000054206	Gzmm	Lmet1|MMET-1	granzyme M (lymphocyte met-ase 1)	protein-coding	4.4708819340875	4.60530534043888	4.59871601397369	4.60288650677534	4.87070203423768	4.50917395740665	4.86227420300414	4.55481263444525	0.313334588235575	0.373950466608318	0.677365748216336
Merged-chr1-132008127-4	chr1	132008004	132008204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007923, intron 1 of 4)	CpG	499.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	6.29248716906336	6.61049798402233	6.52963924490184	6.55304936466196	6.55702348673424	6.83126966711886	6.66565168276806	6.65088814311111	0.239294861447842	0.258415960969859	0.570332383053971
Merged-chr1-58586277-4	chr1	58586184	58586384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025597)	promoter-TSS (NM_025597)	49.0	NM_001310598	213056.0	Mm.26272	NM_172513	ENSMUSG00000038174	Fam126b	C130065N10Rik|D1Ertd53e|D630010C10	family with sequence similarity 126, member B	protein-coding	5.66978748663629	5.83739220749891	5.37603984888792	5.47844554880502	6.21584864727469	5.73831650260109	5.96355600791117	5.8838685991591	0.61284741584367	0.0243425498562618	0.145799255824542
Merged-chr1-58503993-2	chr1	58503893	58504093	+	763.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008765, intron 1 of 17)	B4A|SINE|B4	1116.0	NM_001271526	18393.0	Mm.3411	NM_008765	ENSMUSG00000026037	Orc2	AU041563|Orc2l	origin recognition complex, subunit 2	protein-coding	2.97073487524419	3.23645848602406	3.46407010259438	3.17694639502052	3.69680182010078	3.28968182481312	3.34393037302191	3.40974494811085	0.815783544730922	0.142370644417484	0.419897244509492
Merged-chr17-64661518-4	chr17	64661426	64661626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 6 of 21)	RLTR9E|LTR|ERVK	59877.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	5.75314721662617	4.94956367027169	5.31328449330102	5.53095179097157	5.43945908349913	5.39346151282528	5.40456553872529	5.48324136020745	0.0151602480035376	0.961049886947095	0.98607960708679
Merged-chr5-30850474-4	chr5	30850380	30850580	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-11327.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	5.22383659459091	5.3426759925932	4.98262956593678	5.07961084950224	5.23473430916762	5.65108594149445	5.31946206324363	5.4527739732503	0.465900545760177	0.119701148133636	0.382930697663104
Merged-chr10-61536565-4	chr10	61536464	61536664	+	770.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153542, intron 3 of 4)	intron (NM_153542, intron 3 of 4)	-58920.0	NM_001177511	237362.0	Mm.131297	NM_001177511	ENSMUSG00000020090	Npffr1	Gm236|Gpr147|NPFF1|NPFF1R|OT7T022	neuropeptide FF receptor 1	protein-coding	3.79982137162132	3.88494171891002	3.95558627897265	3.90871354206931	4.01808830832528	3.67808310777032	4.31109734463798	4.0470761678979	0.394673475706474	0.375525443641992	0.678483235683657
Merged-chr4-55630909-2	chr4	55630794	55630994	+	668.75	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-98419.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	3.05495266644639	3.14876683932253	3.16945087657182	3.25963401180423	3.11960521453418	3.03567973491351	2.8558395007276	2.99281871583372	-0.649249214693247	0.267467448837381	0.579177784876944
Merged-chr3-65957394-4	chr3	65957295	65957495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019937, intron 2 of 10)	intron (NM_019937, intron 2 of 10)	854.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	7.23543429964595	7.5914734026339	7.4905327579895	7.41238033649323	7.3736540881012	7.49034617556611	7.64822014378914	7.13828804344138	-0.020211076538574	0.917739769856428	0.969719335386341
Merged-chr4-132539667-4	chr4	132539577	132539777	+	686.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172400, intron 2 of 8)	intron (NM_172400, intron 2 of 8)	4118.0	NM_172400	68598.0	Mm.29685	NM_172400	ENSMUSG00000054405	Dnajc8	1110021D09Rik|2010009J04Rik|AL024084|AU019262|AU044514	DnaJ heat shock protein family (Hsp40) member C8	protein-coding	3.4697078530559	3.80709431211205	3.4701521615707	3.48522130774547	3.53757724792468	3.5253233725312	3.56614082398329	3.57846909170244	-0.0426906312561727	0.930708394122913	0.975093727980612
Merged-chr16-16438660-3	chr16	16438579	16438779	+	712.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 11 of 16)	MRLTR33|LTR|ERVK	-79648.0	NM_001360009	74006.0	Mm.218820	NM_152816	ENSMUSG00000022789	Dnm1l	6330417M19Rik|AI450666|Dlp1|Dnmlp1|Drp1|python	dynamin 1-like	protein-coding	3.88646036237409	3.51940916473316	3.56955468467949	3.38316578689215	3.2202078105125	3.18615830633833	3.50252089832571	3.45999704117756	-0.84994085598116	0.118632206121252	0.381059370142085
Merged-chr9-41121203-4	chr9	41121091	41121291	+	805.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	36871.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	3.99563394702619	4.00220179173385	4.04371488470428	4.05874950978248	4.05460468328103	4.11854485906379	3.8273227555082	3.99386131976979	-0.0634230952999805	0.879427232252735	0.954842749021429
Merged-chr2-166188229-4	chr2	166188142	166188342	+	895.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32559.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	5.22614756840157	4.8202515565566	5.01586090877206	5.0255764577147	4.86677276835128	4.81417033180127	4.85386878542984	4.83664017531554	-0.363254749735903	0.259454250167328	0.571250530584125
Merged-chr19-29948390-4	chr19	29948286	29948486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164724, intron 1 of 7)	intron (NM_001164724, intron 1 of 7)	2596.0	NM_001164724	77125.0	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	5.30657479387912	5.58425460259273	5.27565650006091	5.21683639269194	5.39349193181964	5.45139781427834	5.7680904398742	5.70587296596788	0.416100320814986	0.148704807140006	0.430638328142662
Merged-chr12-104749782-2	chr12	104749636	104749836	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_148948, intron 1 of 26)	intron (NM_148948, intron 1 of 26)	2216.0	NM_148948	192119.0	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	2.75358800481568	2.60460607336974	2.75395744074627	2.56792677558934	2.6536950950064	2.44712130060607	2.55797604250423	2.69287187203781	-0.374444975256782	0.578388770082892	0.814695658189852
Merged-chr10-69212647-2	chr10	69212565	69212765	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001081347)	promoter-TSS (NM_001081347)	8.0	NM_001081347	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	5.42986636609178	5.42810354045313	5.74272601784634	5.6159542921968	5.31901882636917	5.7952086477685	5.43268194258865	5.51243420562751	-0.0807030960154244	0.775950455958893	0.912621347852849
Merged-chr9-56418209-4	chr9	56418100	56418300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025812)	promoter-TSS (NM_025812)	-150.0	NM_172924	244895.0	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	8.64384458352436	8.87304763216836	8.580210546782	8.53723160044684	8.80996812079606	8.86318151501737	8.83217164614425	8.76029618138816	0.191746429487578	0.209058685641735	0.513442418925301
Merged-chr1-138328042-3	chr1	138327929	138328129	+	848.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54291.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	3.63218803042093	3.4473647010518	3.36268149079905	3.55867354473618	3.52020126189015	3.27961593373517	3.56828704058023	3.52944540307191	-0.0834783191459783	0.868487546472856	0.950757933022268
Merged-chr4-24574467-4	chr4	24574382	24574582	+	874.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_199467, exon 14 of 24)	exon (NM_199467, exon 14 of 24)	78031.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	4.54342688855877	4.02792498707894	4.46472408074876	4.2708172521857	4.25058784690131	4.26795925058883	4.82549935804379	4.57903371518422	0.381992630815838	0.352734478398977	0.659679630621423
Merged-chr18-35752275-4	chr18	35752166	35752366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11712.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	6.17663321469393	6.21890860651604	5.47329955427158	6.02405775385321	6.38069765156593	6.16691469171866	6.22061868965506	6.05178680743945	0.319196343214284	0.232200216240091	0.541823340930811
Merged-chr9-122117325-4	chr9	122117250	122117450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164572)	promoter-TSS (NM_001164572)	84.0	NM_001357774	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	6.57909228350392	6.51648265225647	6.49798833065927	6.6112783941276	6.58751116891389	6.77193522640187	6.69591261734708	6.47624561633011	0.112366277236881	0.586272766043603	0.81856236198936
Merged-chr5-135251162-3	chr5	135251018	135251218	+	828.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010246)	promoter-TSS (NM_010246)	-71.0	NM_010246	14371.0	Mm.6256	NM_010246	ENSMUSG00000049551	Fzd9	mfz9	frizzled class receptor 9	protein-coding	3.55337897171458	3.55516690241482	3.79788878353445	3.32551743893708	3.25365639603124	3.67166991182262	3.4286366578936	3.55185597626	-0.26501898126991	0.613555111509136	0.833337661186734
Merged-chr1-134725457-2	chr1	134725357	134725557	+	606.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355726, intron 1 of 8)	intron (NM_001355726, intron 1 of 8)	16157.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	3.05235718579418	2.94619922777625	3.16549427745468	2.83215438538046	2.89770788436959	3.03854154795639	3.20441593097456	2.86165861415311	0.0379984525921961	0.949533518554179	0.981953047656771
Merged-chr2-94437075-4	chr2	94436973	94437173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007466, intron 1 of 13)	intron (NM_007466, intron 1 of 13)	1113.0	NM_007466	11800.0	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	5.50428853309736	5.93502522657205	5.80427437063686	6.25328109256167	5.60531951005467	6.00335990121568	5.79863236556011	5.89346476561753	-0.159168811320802	0.581126459025076	0.816115543898387
Merged-chr2-169779073-3	chr2	169778925	169779125	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080455, intron 1 of 1)	(TC)n|Simple_repeat|Simple_repeat	145379.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	2.99902879512931	2.99170806489294	3.2360647250804	2.64450089927939	4.15486592702246	3.95665677332105	3.85466750016046	4.36388190634067	4.35759360191011	7.28729338189476e-13	7.95555606794306e-11
Merged-chr1-136131253-4	chr1	136131134	136131334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046167)	promoter-TSS (NR_046167)	-51.0	NR_046167	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	7.54094746733245	7.40060663376781	7.75874650286826	7.67649060485497	7.63542371469152	7.67321966138568	7.68226239818474	7.34066166490819	-0.0154935872556718	0.933230075478264	0.975936701173319
Merged-chr11-120526157-4	chr11	120526069	120526269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-4558.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	6.21432881322731	6.67022932978887	6.04297340299341	5.83717771581325	6.74464968391351	6.5072917176979	6.40376375680769	6.44897708634499	0.470829687143104	0.0794938289357131	0.305325450562007
Merged-chr19-60611960-4	chr19	60611831	60612031	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30908.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	5.02788483037333	4.88698068660808	4.82012571838926	4.9678725584543	5.01514846672207	4.74992734786488	5.1251005442852	4.56809513415992	-0.0787476049636724	0.816079099975048	0.929190254316708
Merged-chr10-60752838-4	chr10	60752727	60752927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023596)	promoter-TSS (NM_023596)	-45.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	7.54894514299318	7.68307051240409	7.36705005907882	7.38421292468946	7.72910415586282	7.52359177616001	7.55699120147354	7.59769879769251	0.146065721727429	0.414470012468872	0.709044594374843
Merged-chr17-66111617-4	chr17	66111524	66111724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037757)	promoter-TSS (NM_001037757)	-21.0	NM_001037757	68767.0	Mm.296545	NM_026833	ENSMUSG00000024101	Washc1	1110049F14Rik|ORF19|Wash|Wash1	WASH complex subunit 1	protein-coding	7.49647289305891	7.46605133018288	7.77406106863296	7.64417884028089	7.47904126137042	7.30837273421851	7.64295142965661	7.65896451666441	-0.0946912111994132	0.606304200560775	0.829368409964156
Merged-chr9-24395023-4	chr9	24394943	24395143	+	859.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108097.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	4.38016776050147	4.11662970799508	4.41895804198532	4.61399841134803	3.62812014913732	3.86572737332599	4.15245316226682	3.91808347526171	-1.3390965082577	0.00301405347047298	0.0321067512683023
Merged-chr7-73422661-4	chr7	73422571	73422771	+	929.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46897.0	NR_040324	319783.0	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	4.36555354368575	4.49461218970911	4.12827305819659	4.22571375116603	4.43792745495811	4.62098490559721	4.54521074667341	4.22618043336458	0.366130289079225	0.341058441526443	0.650197428160039
Merged-chr9-42124385-4	chr9	42124315	42124515	+	896.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011436)	promoter-TSS (NM_011436)	-118.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	4.11100870230394	4.13866968108009	4.56551160821198	4.55981660889048	4.72280634873963	4.29184964785642	4.7841708177764	4.35557424020967	0.430429594295272	0.29480440174773	0.606891558075013
Merged-chr6-90597675-4	chr6	90597583	90597783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356412, intron 21 of 22)	intron (NM_001356412, intron 21 of 22)	-7197.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	7.08869114150427	6.95431346175687	7.55311526716092	7.32482897627977	7.26215630502397	7.07042506519262	7.21364024050188	7.3476816975502	-0.0303688514217348	0.883872624345311	0.956345208303943
Merged-chr2-164835038-4	chr2	164834938	164835138	+	990.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038492, intron 5 of 14)	intron (NM_001038492, intron 5 of 14)	1265.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	4.97756303312318	4.75722884485682	4.87013945467717	5.16885692448617	5.24410368250276	5.04474922888711	4.95443574060825	4.90399376957696	0.162492029018815	0.621939601624229	0.838127168329787
Merged-chr6-99205365-4	chr6	99205264	99205464	+	968.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	61151.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	5.20694366795528	5.46099909320501	5.11080103291517	5.35559000888672	5.06578979007346	5.31793720036899	5.11885006109312	4.84793856896629	-0.379340609955558	0.219819023700286	0.527421906828108
Merged-chr1-186549405-3	chr1	186549303	186549503	+	909.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131124, intron 1 of 2)	L1MB3|LINE|L1	9278.0	NR_131124	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	3.78533085579863	3.64408228549068	4.23169584329568	4.41986177831948	3.60067643040083	3.79438327564414	3.77048363185229	3.55153500745105	-1.12281192430425	0.0280588482754903	0.160288985666222
Merged-chr12-24493606-4	chr12	24493520	24493720	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4961.0	NM_020614	21340.0	Mm.39082	NM_020614	ENSMUSG00000059669	Taf1b	4930408G01Rik|A230108M10Rik|TAFI68|Tafi86|p63	TATA-box binding protein associated factor, RNA polymerase I, B	protein-coding	5.38253612450767	4.89573973278885	4.96244338298076	5.02340767673658	4.85448841078195	4.86481611757782	4.93858825395462	5.30071302202397	-0.145075784296548	0.664138762779414	0.860887107151216
Merged-chr15-64001629-4	chr15	64001518	64001718	+	902.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	-3552.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.4669621324268	4.860899501815	4.46765777573221	4.71532981012614	4.25394191383434	4.6416434983137	4.68164721540123	4.32819384291557	-0.367970143135298	0.335665134168979	0.645927430703489
Merged-chr6-39567737-4	chr6	39567616	39567816	+	738.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6160.0	NM_178873	57869.0	Mm.247957	NM_178873	ENSMUSG00000046947	Adck2	AA408112|BB006057	aarF domain containing kinase 2	protein-coding	3.89224373889665	3.69240860167506	3.80309490641526	3.54058792837951	3.54635090997784	3.71658879042035	3.47280768523702	3.59771422855243	-0.457295755259043	0.346866152059887	0.654983043837928
Merged-chr12-105963270-3	chr12	105963206	105963406	+	736.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-46957.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	3.48491174054793	3.77365655734288	3.88293847617708	3.67760027452177	4.06229079365155	3.8464826074921	4.12766279976375	3.88062773248637	0.788871122983349	0.0802172825107247	0.306961236053485
Merged-chr7-90035252-3	chr7	90035152	90035352	+	855.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	6093.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	3.86652078370375	3.67171467255041	3.77008060697615	4.04193740854646	3.8457810380636	3.66651813776447	3.47803012129218	3.66309574244103	-0.531078074202804	0.271362586089733	0.583156739184864
Merged-chr4-8926833-4	chr4	8926799	8926999	+	906.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	175575.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	3.4466321294314	3.80751895796409	3.32075001567012	3.52072492472189	3.79921835494098	3.67873148430223	3.60194598132115	3.6661881334823	0.476979944245711	0.33416604613775	0.644805241742718
Merged-chr5-115262084-4	chr5	115262003	115262203	+	929.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302449, intron 1 of 16)	intron (NM_001302449, intron 1 of 16)	10792.0	NM_001302448	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	3.98792422226368	4.66288954062831	4.73404023398436	4.45022815735541	4.46187818602291	4.56581484061183	4.28389929534473	4.25264482525106	-0.208011607910169	0.613966897095233	0.833604331777153
Merged-chr15-57976542-4	chr15	57976444	57976644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9359.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	6.03004649930795	6.67575096071634	6.07380648765231	5.69886432616032	5.80823853157072	6.33039953009953	6.06331970618252	5.95998876052754	-0.180116037221029	0.552969275804473	0.799963417797785
Merged-chr3-96256097-4	chr3	96255999	96256199	+	959.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7218.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	4.6546848189097	4.84430817765446	4.32583731083941	4.83069253198253	4.95989546144988	4.78993066028996	4.89449879315213	5.1879599567418	0.552553479402406	0.119129114425001	0.38190374944411
Merged-chr2-49554948-4	chr2	49554784	49554984	+	969.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64430.0	NM_008449	16574.0	Mm.256342	NM_008449	ENSMUSG00000026764	Kif5c	KINN|Khc|NKHC|NKHC2	kinesin family member 5C	protein-coding	4.54199503813166	4.86737874947318	5.03500339646072	4.57305645161815	5.39459698495412	5.42658116810706	5.50770022292774	4.92478133778826	1.10114369155952	0.0010895718820428	0.0144073181995893
Merged-chr8-120537893-7	chr8	120537797	120537997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106159)	promoter-TSS (NR_106159)	-171.0	NR_151732	74227.0	Mm.334856	NR_151732	ENSMUSG00000102737	1700016A09Rik	-	RIKEN cDNA 1700016A09 gene	ncRNA	4.89522180777128	4.74889106600971	5.22663229322092	5.20331983774207	4.8794048189973	4.9954825251306	5.04729697962662	5.33407446756745	0.0507763369530316	0.879556119409532	0.954911763269136
Merged-chr18-90509508-4	chr18	90509412	90509612	+	961.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198295)	promoter-TSS (NM_198295)	-642.0	NM_198295	67988.0	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	4.45310884772593	4.27131238392365	4.65336718046958	4.48061222320318	4.47486481782343	4.82117541860764	4.34595531466105	4.7216067382741	0.29068606204346	0.438317208565434	0.726330030804391
Merged-chr4-134919845-4	chr4	134919747	134919947	+	890.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3778.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	3.95422725685512	3.55973123271024	4.04917692086014	3.93149043341718	3.94526692560075	4.21856956637992	3.88865753561367	4.04666507382462	0.383942560076959	0.391669410483741	0.691351450352092
Merged-chr1-87201640-1	chr1	87201540	87201740	+	687.5	f0_balb.idr	Intergenic	Intergenic	-4171.0	NM_009604	11449.0	Mm.2810	NM_009604	ENSMUSG00000026253	Chrng	Achr-3|Acrg	cholinergic receptor, nicotinic, gamma polypeptide	protein-coding	3.23023767860232	3.12193915988171	3.28668443211004	3.44385696319624	3.22886891651433	3.39754834314781	3.16104302636196	2.97912503362881	-0.321081054435984	0.571754810658753	0.810791045904066
Merged-chr2-30359190-4	chr2	30359067	30359267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001289710, exon 1 of 10)	exon (NM_001289710, exon 1 of 10)	149.0	NM_139302	227700.0	Mm.33343	NM_139302	ENSMUSG00000026860	Sh3glb2	SPAS-1	SH3-domain GRB2-like endophilin B2	protein-coding	5.09749663690181	5.31808964195482	5.33696458219793	5.02639225593242	4.8837654489894	4.85587339062982	5.16752266505365	5.06164605025373	-0.376866491137988	0.23353348844735	0.54320709042822
Merged-chr3-121618790-4	chr3	121618692	121618892	+	829.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	24693.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	3.88812181365478	3.64642358292681	3.44350085787674	3.77952251271647	3.8162802374085	3.68679076817003	3.96157771858778	4.02004432920489	0.500045174170283	0.287381154433412	0.599165295589215
Merged-chr1-45881013-4	chr1	45880902	45881102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	44592.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	5.32155395321825	5.39677866893051	5.38571116320413	5.5884523031315	5.70767882552169	5.81042658775777	5.68172849379551	5.65805252138495	0.458507421569068	0.0867893913758578	0.321280533011347
Merged-chr2-166750799-4	chr2	166750700	166750900	+	873.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36968.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.35641503572855	3.92969322544849	4.04193047567612	4.16007060240377	3.96206197207203	4.40294839191294	3.8644743273966	4.57282766369177	0.245182424112604	0.587268051470297	0.819100437669827
Merged-chr1-72212273-4	chr1	72212175	72212375	+	968.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357488)	promoter-TSS (NM_001357488)	32.0	NM_001005423	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	5.05691075956396	4.94557695326033	4.9904293720412	5.28364873509059	4.92171380744755	4.98099661627168	5.12703841991005	4.80158468550301	-0.253451590941376	0.430694341991635	0.721216765724688
Merged-chr6-108740737-4	chr6	108740621	108740821	+	880.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-42338.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	5.06570232839334	4.47284491718233	5.1828351906083	5.71833374080302	4.69990865874814	4.31847639580973	4.38475476047917	4.40140640035273	-1.50105062104726	0.000551493158837268	0.00834887414114384
Merged-chr13-102690245-4	chr13	102690139	102690339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-3308.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	5.77359646728871	6.32932471989451	6.21962314311325	5.69823288692849	6.07265310825936	6.005059495473	6.42475323820235	6.27015311573934	0.275776167968198	0.314516955665121	0.626465142785405
Merged-chr3-148419815-3	chr3	148419717	148419917	+	813.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	534818.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	3.20790553094646	3.21561182071631	3.89740606654119	3.42973170360794	3.03627321535442	3.4479605867367	3.37680497456162	3.33055051224818	-0.566928046691778	0.332087005520083	0.643114462430911
Merged-chr7-6285548-4	chr7	6285444	6285644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1036.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	7.14775705073481	7.25995000628887	7.27463311150616	7.57858466809818	7.6522955773829	7.39647290977245	7.5272155562746	7.35360392307621	0.205037612752082	0.295450708145226	0.607396411491466
Merged-chr3-95659550-4	chr3	95659447	95659647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008562, intron 1 of 2)	intron (NM_008562, intron 1 of 2)	826.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	7.54117774671976	8.35184063919427	7.4663120931287	7.05277076325898	7.77928290629049	7.97784082555977	7.48670421426649	7.65186969669635	0.0540086777005876	0.845406384633581	0.94153181017389
Merged-chr18-66474034-4	chr18	66473921	66474121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15417.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	6.55899478269001	6.6801098998513	6.24645728228347	6.60459730864114	6.66079498391771	6.84551874979368	6.85391812460832	6.58771541913946	0.284157380200607	0.190343692824844	0.489467980909667
Merged-chr7-30664974-4	chr7	30664810	30665010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027999)	promoter-TSS (NM_027999)	84.0	NM_027999	71909.0	Mm.290410	NM_027999	ENSMUSG00000078762	Haus5	2310022K01Rik	HAUS augmin-like complex, subunit 5	protein-coding	6.09070403578528	6.17833973815039	5.34764496163488	5.87925174924404	5.98315266554798	6.03310755866787	5.48319074182514	5.92183120373994	-0.0617235569414176	0.836890522928318	0.938097898989847
Merged-chr7-47035625-4	chr7	47035508	47035708	+	884.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-15032.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	4.76245784009123	4.55183940115244	4.68892901138418	4.96068984954151	4.10302490376549	4.5679045341802	4.99785720217063	4.6070158902882	-0.334367995193455	0.408561165562382	0.70438176546703
Merged-chr4-10923391-4	chr4	10923285	10923485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48887.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	8.08984693579357	7.9128018809373	8.14728081208205	8.47712909051839	8.08323780182345	8.06123002955929	8.12674035621514	7.72637904560465	-0.22021613264926	0.256500337839105	0.568162252716061
Merged-chr3-107102058-4	chr3	107102062	107102262	+	943.435425	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008417, intron 1 of 2)	CpG	595.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	3.80374952832895	3.5117146191076	4.1720852857161	3.74017875401034	4.0198589006516	4.12522415935514	3.84038187383197	3.80212495580758	0.372205560685265	0.430200822107624	0.720839555480192
Merged-chr19-4397903-3	chr19	4397766	4397966	+	963.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001984)	promoter-TSS (NM_001001984)	-789.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	4.81248791659362	4.36177059659482	4.51503597699124	4.50675593612479	4.71987642222853	4.41529841833098	4.21733712310557	4.93592881716687	0.114231409461302	0.772882755719641	0.911052408089747
Merged-chr18-69346645-4	chr18	69346574	69346774	+	966.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 1 of 19)	intron (NM_001361128, intron 1 of 19)	514.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	4.53426577266766	4.26635461677566	4.13355484642535	4.19771540322779	4.40182922345556	4.54440127802527	4.58718862519093	4.45313452324386	0.494956751968175	0.189392787752111	0.488251009184518
Merged-chr4-145214618-4	chr4	145214526	145214726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011610, exon 10 of 10)	3' UTR (NM_011610, exon 10 of 10)	-19621.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	5.64870814051136	5.63056419842187	5.5958200359865	5.43956375835562	5.99633874396213	5.50121359186512	6.19826679094951	5.74694981605825	0.531331194835232	0.0560431966643461	0.247800888021586
Merged-chr2-156719091-4	chr2	156719049	156719249	+	977.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040505, intron 1 of 3)	MTB_Mm|LTR|ERVL-MaLR	1760.0	NR_040505	74846.0	Mm.443946	NR_040505	ENSMUSG00000086638	4930405A21Rik	-	RIKEN cDNA 4930405A21 gene	ncRNA	5.13011180266199	5.07432742441577	4.97183378466901	4.58457697995989	5.18229971094565	4.96540676295065	4.55755182007804	4.82512266061304	-0.0623739449755554	0.864526415936803	0.949184219382502
Merged-chr6-57823666-4	chr6	57823571	57823771	+	865.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	1454.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	4.16364272327427	3.91019220324999	4.16428060412311	4.21503504472853	3.91595365232669	4.33540527970113	3.89954685789813	4.40775601944613	0.0795709672646609	0.855061899859334	0.945424485789793
Merged-chr6-29529206-4	chr6	29529090	29529290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252382)	promoter-TSS (NM_001252382)	-92.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	7.40213817930939	7.56752310825583	7.41341894064077	7.49729235031582	7.49343629529029	7.64907007022188	7.78078104523753	7.44753962721727	0.160859482119965	0.365343292480375	0.670036077799093
Merged-chr8-94704143-4	chr8	94704022	94704222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7880.0	NM_026385	67801.0	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	7.1066867778987	7.24536556803934	6.91248698045448	7.08730577193267	7.46212887964038	7.27315348522822	7.31212345284869	7.5869231479445	0.434867881905098	0.021389856091381	0.133870444625729
Merged-chr6-48579494-4	chr6	48579337	48579537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-6635.0	NM_001347167	71660.0	Mm.28231	NM_027852	ENSMUSG00000009281	Rarres2	0610007L05Rik|AI303516	retinoic acid receptor responder (tazarotene induced) 2	protein-coding	6.23017591201794	5.95105593903462	6.33341627919993	6.28063628438151	5.53696301166935	5.77852930586118	5.78440507710114	5.59523629301709	-0.862188182157957	0.000659161582026161	0.00961699927184517
Merged-chr11-61193591-3	chr11	61193493	61193693	+	820.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15149.0	NM_007436	11670.0	Mm.4257	NM_007436	ENSMUSG00000019102	Aldh3a1	Ahd-4|Ahd4|Aldh|Aldh3	aldehyde dehydrogenase family 3, subfamily A1	protein-coding	3.75546611636562	3.88151579886992	3.35200931667948	3.24968398393648	3.68621381528308	3.59791096016901	3.87907224307983	3.84928013460434	0.542218740059164	0.298260972082722	0.610388365253329
Merged-chr3-144202298-7	chr3	144202207	144202407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161770)	promoter-TSS (NM_001161770)	25.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	5.3252363946878	5.08142886058213	5.20482330245764	5.2868164036594	5.34447184198144	5.31426994180904	5.0463591337331	5.35100947426716	0.0770602598373796	0.793073335592229	0.919830957220335
Merged-chr10-128083175-4	chr10	128083075	128083275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016774)	promoter-TSS (NM_016774)	-132.0	NM_016774	11947.0	Mm.238973	NM_016774	ENSMUSG00000025393	Atp5b	Atp5f1b	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	protein-coding	8.56644801764583	8.86717886255188	8.55827619328025	8.43387250112918	8.88113588442067	8.94242774125439	8.52384207982877	8.46385746742774	0.134614336918555	0.468958863496562	0.748028481194465
Merged-chr5-142376263-4	chr5	142376166	142376366	+	872.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25231.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	4.90208757182041	4.29137238861677	4.30000952335759	4.6306117792538	4.48085138902622	4.37914157392091	4.57799600075775	4.43425249773427	-0.195599158221154	0.614945729970446	0.834205058216801
Merged-chr9-109023478-4	chr9	109023389	109023589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 9 of 13)	MLT1-int|LTR|ERVL-MaLR	-15078.0	NM_001284332	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	6.24160871258541	6.62577408307001	5.96688769320527	6.30562090423312	6.13680938666052	6.33953636637179	6.091146946603	6.43313265865189	-0.0891780753204352	0.722557543474764	0.889239126977372
Merged-chr18-84589735-4	chr18	84589624	84589824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033341)	promoter-TSS (NM_001033341)	-220.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	6.37744785744836	6.37575110503194	6.44792266749683	6.05428216131724	6.46223227319194	6.67267709173022	6.48030305799577	6.2623372835268	0.251377417946989	0.280373140264367	0.592346638474506
Merged-chr11-79871334-4	chr11	79871242	79871442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91045.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	6.66221855980058	6.86215396248389	6.60012925347895	6.71095683155084	6.95555708538664	6.62219066093573	6.78831350046544	6.83162222050317	0.139123086176258	0.496511162415664	0.766462679028389
Merged-chr1-135766408-3	chr1	135766295	135766495	+	807.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013750, exon 1 of 2)	5' UTR (NM_013750, exon 1 of 2)	310.0	NM_013750	27280.0	Mm.34346	NM_013750	ENSMUSG00000041801	Phlda3	Tih1	pleckstrin homology like domain, family A, member 3	protein-coding	3.51891739258926	3.39203889444759	3.72624105165797	3.40017779797239	3.27210166782347	3.57873732375273	3.66170934240612	3.81580474023882	0.265538051097878	0.607013637408333	0.829747728089716
Merged-chr5-98031156-4	chr5	98031060	98031260	+	994.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133738)	promoter-TSS (NM_133738)	-198.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	5.81267674239891	5.47385152044956	6.02825045887563	5.65225847462041	4.7383662909344	5.47152475097373	5.09727144875828	5.22413534990959	-1.07456701217876	0.000916497428112883	0.0125670141467245
Merged-chr9-47653501-2	chr9	47653424	47653624	+	611.0	f0_balb.idr|f1_balb.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	123172.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	3.08533879250651	3.31631972088749	3.13764069058427	2.90826142464278	2.5656681901115	2.60176504038086	2.48957167715964	2.49402114344443	-3.357795970009	0.000108260315855389	0.00216822200964285
Merged-chr17-6961766-4	chr17	6961660	6961860	+	893.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_147155)	promoter-TSS (NM_147155)	-604.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	4.79022850410851	5.66901100519158	4.8662084650244	4.45256356688539	4.5805750674668	5.17811018614893	4.41873694278297	4.78779861706608	-0.513053918042674	0.247810699291328	0.558985029516948
Merged-chr5-108692497-4	chr5	108692413	108692613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1716.0	NM_001164259	116701.0	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	5.25792329415634	4.93169089593363	4.80853352818829	4.7258617177179	5.22961090555696	5.34128637695814	5.17323236187517	5.36661958965562	0.659979098192484	0.0367567457924194	0.190929607294653
Merged-chr14-62245630-5	chr14	62245602	62245802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47277.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	5.25898261522263	5.716849582878	5.94839813448582	5.40976315472705	5.23131031141964	5.468736675787	5.26600026682757	5.15437631881615	-0.565850574088126	0.0678560260615743	0.277967266071615
Merged-chr8-92855416-4	chr8	92855331	92855531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173014)	promoter-TSS (NM_173014)	98.0	NM_001357374	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	5.05036375502588	5.08980276218158	5.1539203563031	4.74207570003385	5.34250554590846	5.36097720437074	5.44445620416572	5.46838439451503	0.754814778661348	0.0120725016279064	0.0903394231888929
Merged-chr2-3427785-3	chr2	3427728	3427928	+	822.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302674, intron 2 of 13)	intron (NM_001302674, intron 2 of 13)	3697.0	NM_001302684	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	3.14513415303516	3.54160835461987	3.14549519508238	3.28450795696987	3.16688168191371	3.49292265011929	3.19648063829087	3.26561783013496	-0.03617101357927	0.947903389343132	0.981348536548879
Merged-chr3-109323983-4	chr3	109323845	109324045	+	874.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16738.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.36083463339085	3.81813455814856	4.15941316548601	3.92187490565448	4.14548529308473	4.1445542636712	4.09652159607694	3.74809766618634	-0.0664839393824694	0.882468787519885	0.95575354370667
Merged-chr12-3426080-4	chr12	3425945	3426145	+	857.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172421)	promoter-TSS (NM_172421)	702.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	3.66591993000848	3.52700355536514	3.50405915156531	3.59974987169637	3.3176716390274	3.6196038991882	3.65126593429703	3.93358615863764	0.212492910520078	0.674301586657335	0.866093506924868
Merged-chr12-11196416-3	chr12	11196300	11196500	+	998.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131084, exon 3 of 5)	non-coding (NR_131084, exon 3 of 5)	8102.0	NR_131084	77442.0	Mm.159922	NR_131083	ENSMUSG00000112041	9530020I12Rik	-	RIKEN cDNA 9530020I12 gene	ncRNA	4.69037783574153	4.6872596001642	4.72580366164391	4.82173663114534	4.15566208730334	4.07824614497667	4.16200255943102	4.41484991826488	-1.2442756964137	0.00107409293331795	0.0142343811023345
Merged-chr8-85007915-4	chr8	85007834	85008034	+	859.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_052011, exon 10 of 10)	non-coding (NR_052011, exon 10 of 10)	6474.0	NM_001130194	212989.0	Mm.215154	NM_001130194	ENSMUSG00000052819	Best2	Vmd2l1	bestrophin 2	protein-coding	4.24531349309879	4.13610129358561	4.11618659328448	3.75086727267204	4.34818457559284	4.04290851759156	3.61241978904514	4.15831929482585	0.0236741595850947	0.960342420815429	0.985883800393479
Merged-chr16-44779600-2	chr16	44779500	44779700	+	776.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	13864.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	2.91164991944002	3.2891517138593	3.27962751977212	3.05946958942763	3.17078094628247	3.27948825793918	3.09766886231115	3.10711887287811	0.093024108178609	0.869823452643032	0.951114878154095
Merged-chr17-70990117-4	chr17	70990012	70990212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	404.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	6.15814281802423	6.1989044587875	6.2210404073765	6.44992409743206	6.34664642889707	6.33665183207716	6.44201237978263	6.8376505371813	0.339751342496823	0.157051501949424	0.443408387499825
Merged-chr8-120572775-4	chr8	120572689	120572889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198671, exon 11 of 16)	exon (NM_198671, exon 11 of 16)	16286.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	6.02039468463638	5.29720306598348	6.02146545293756	6.01357545098045	5.53454540423048	5.6461537358235	5.44111142587184	5.55186096358733	-0.551058700698744	0.0621407968861611	0.263732864355709
Merged-chr1-144245898-3	chr1	144245769	144245969	+	964.892883	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015811, intron 4 of 4)	intron (NM_015811, intron 4 of 4)	3235.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	3.99134767779794	3.46808483398919	3.94849350673598	3.62054043978942	3.62125117108674	3.97863076966406	3.63629846089193	3.59172267471286	-0.159810994409033	0.748035418756101	0.900798759417346
Merged-chr12-21369185-4	chr12	21369077	21369277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291871, intron 1 of 18)	(CAGA)n|Simple_repeat|Simple_repeat	4455.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	5.79643528298199	5.87252174596397	5.8705762989864	5.81116774153279	6.21026721962248	6.06946899882681	5.99558768238331	6.02207797170786	0.392315230431289	0.0966737910689269	0.340583239680021
Merged-chr5-12206171-4	chr5	12206069	12206269	+	920.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-176997.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	4.26758801618559	4.35568653486756	4.84816848074318	5.26188764871651	4.33655598769784	4.5477096541529	4.56910166103161	4.77648936825951	-0.43031700179052	0.325535139518493	0.637098314429112
Merged-chr11-77216834-5	chr11	77216701	77216901	+	900.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 1 of 14)	intron (NM_177710, intron 1 of 14)	376.0	NM_177710	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	4.07356151924004	3.82293621699649	3.79965416686066	3.56742304048413	3.68925711896562	3.86749986109003	3.83332627802311	3.69123534649108	-0.134263354843824	0.775521254309407	0.912391634160948
Merged-chr19-3905566-7	chr19	3905472	3905672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016921)	promoter-TSS (NM_016921)	-342.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	5.65453132437591	5.89037238640016	6.11412498003104	5.36669733240896	5.61559138164692	5.72262070270503	5.72749087316388	5.77675430544271	-0.0996483708315626	0.732428636174398	0.893963778565797
Merged-chr1-57429903-4	chr1	57429767	57429967	+	857.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23193.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	3.7224325197219	3.83637307010035	3.87139735898737	3.98307040702312	3.6680756503796	3.54442645610212	3.65524500055863	3.77221372433335	-0.608538555937304	0.18955122433929	0.488507335826128
Merged-chr9-14860150-4	chr9	14860094	14860294	+	747.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310734)	promoter-TSS (NM_001310734)	-16.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	3.43232455528352	3.51631027685663	3.54997846908544	3.40596468574622	3.43696426297235	3.97093261421742	3.64224020163459	3.75458500001356	0.742464753524125	0.131822822122718	0.404210211448674
Merged-chr17-31664922-4	chr17	31664823	31665023	+	769.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6159.0	NM_001357907	108121.0	Mm.379289	NM_024187	ENSMUSG00000061613	U2af1	2010107D16Rik	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1	protein-coding	4.20875560245741	4.02196786447148	3.53323249704434	3.65861638387599	3.96096305283792	3.77318636307713	3.801382830836	3.59325436665351	-0.239671015319559	0.630725144617703	0.843039548358656
Merged-chr4-48278780-3	chr4	48278696	48278896	+	700.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010569)	promoter-TSS (NM_010569)	793.0	NM_029572	76299.0	Mm.317701	NM_029572	ENSMUSG00000028343	Erp44	1110001E24Rik|AI849526|AL033348|Txndc4	endoplasmic reticulum protein 44	protein-coding	3.35992119041969	2.92170662238537	3.30787090227217	3.21712318140825	2.99443378720998	3.24735792393685	3.24026103929685	3.19412907095792	-0.159280495026437	0.780890134483928	0.914720297579717
Merged-chr15-59802556-4	chr15	59802457	59802657	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7598.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	5.07835129277345	4.75791922125265	5.01351605844665	4.97975731568924	4.94657294189103	4.96958722599017	5.02220034331529	5.16816627450893	0.127721728313514	0.684234650919253	0.870662844895804
Merged-chr9-43090787-2	chr9	43090687	43090887	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359232, intron 1 of 40)	intron (NM_001359232, intron 1 of 40)	14931.0	NM_001359232	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	2.60552147878712	2.45915035861551	2.24508835997856	2.17015428739146	2.70060563473128	2.64822812396226	2.59599529333321	2.72502788526495	1.63496077164377	0.0263980957751999	0.154079991498369
Merged-chr2-72848637-4	chr2	72848531	72848731	+	904.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34914.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	4.75092200750407	4.71841504133024	5.29989174451569	5.41795886620895	4.85808367869094	4.75973092198874	4.84406651538855	4.66549081145542	-0.622992521883876	0.0897753486078947	0.327195060858235
Merged-chr16-23307645-4	chr16	23307539	23307739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	17169.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	6.37485473097816	6.07348570748562	6.24817542850898	6.67967278732263	6.10237768810921	6.14810473912665	6.39409431190075	6.2437064285323	-0.237056189836877	0.344840557274984	0.653272456984432
Merged-chr9-57234012-4	chr9	57233953	57234153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2503.0	NM_001014398	541610.0	Mm.378036	NM_001014398	ENSMUSG00000070298	Trcg1	-	taste receptor cell gene 1	protein-coding	6.43016726027553	6.62752922357284	6.46502579390521	6.40415550843123	6.23099728385007	6.48189227713623	6.0250894010844	6.47691720788532	-0.252380341720432	0.271912772691606	0.583511087081789
Merged-chr11-46875837-4	chr11	46875751	46875951	+	948.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65052.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	4.2019430996992	4.92003854886021	4.82522027123734	4.2090336228705	5.09692421152288	4.68471468561068	5.16406987491192	4.50289922288289	0.66216769118756	0.115196726127671	0.375505100872834
Merged-chr8-10899881-4	chr8	10899797	10899997	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102285)	promoter-TSS (NR_102285)	-25.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	5.29489376149694	4.94324161485074	4.98236101002729	5.13514661024594	5.16915604687589	5.22486835249502	4.76893750139383	5.01405621134692	-0.0720671924189332	0.822127539723777	0.932041349844687
Merged-chr4-63391459-4	chr4	63391354	63391554	+	983.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 4 of 21)	intron (NM_001045514, intron 4 of 21)	6786.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	6.02964031610175	5.37948359258733	6.33988252348187	6.03535017164141	5.71594060432319	5.59302757097899	5.41747137769736	5.16665322459925	-0.812415976810115	0.0115911996961824	0.0876686859180285
Merged-chr8-46868419-4	chr8	46868319	46868519	+	978.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-118468.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	5.23084297869454	5.08835422929658	4.91763873799818	5.00718089229173	4.73785399661816	4.77476735524485	4.82135620867793	4.94948423034017	-0.484661248748558	0.131679225985863	0.404069478636305
Merged-chr4-132526865-2	chr4	132526765	132526965	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	8549.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	2.572570277217	2.50610121989857	2.49758798966123	2.51245507818611	2.95091372590443	3.06487853991378	2.76622930883622	2.95109293939638	2.01291183286502	0.0020037745540392	0.0234313568230584
Merged-chr10-117764805-4	chr10	117764715	117764915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134010, intron 19 of 27)	intron (NM_134010, intron 19 of 27)	-18457.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	5.6829806837372	5.63415139537157	6.24624417232213	5.87225202252422	5.52990918982332	5.41409429818911	5.68005638465593	5.3655364377528	-0.623956960722344	0.0294931515098368	0.165363767728923
Merged-chr11-63897966-4	chr11	63897890	63898090	+	837.946411	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018805, intron 1 of 1)	intron (NM_018805, intron 1 of 1)	24294.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	3.43888497896759	3.45455623402874	3.25876842448685	3.04440516708979	3.59254803730752	3.37291257250269	3.72164707924822	3.59580328117681	0.960050808176394	0.0682422905984214	0.278910239035486
Merged-chr7-122256850-4	chr7	122256763	122256963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32262.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	6.53332594123219	6.27868060427274	5.82882444133524	6.26156896475142	6.0645837172414	6.19461971012095	5.74748848869059	5.92290837452153	-0.397017385066334	0.132561119782336	0.405499503416001
Merged-chr10-99929399-4	chr10	99929312	99929512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-86409.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	6.85014868093468	7.07876920648912	6.54458109053033	6.93565680241208	6.99796433809342	6.86895906950464	6.84340433770723	6.65589178245725	-0.0301775853393037	0.888602176086814	0.958228889234223
Merged-chr5-53087600-3	chr5	53087488	53087688	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38235.0	NM_011402	20531.0	Mm.284891	NM_011402	ENSMUSG00000029188	Slc34a2	AA536683|D5Ertd227e|NaPi-2b|Npt2b	solute carrier family 34 (sodium phosphate), member 2	protein-coding	3.3729161059948	3.62210308189663	3.55736766966721	3.92347155532399	3.84534118173466	3.55184710169322	3.93100251391219	3.61149861387215	0.289465757504841	0.574793919763501	0.812577088676191
Merged-chr17-5730780-4	chr17	5730641	5730841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 7 of 8)	intron (NM_146073, intron 7 of 8)	-67916.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	7.57343414655618	8.01568930441379	7.95707360037913	7.71807943543321	7.61644836353097	7.91451227689971	7.56453376115006	7.68283834570068	-0.167829358185504	0.372709634203615	0.676451504400639
Merged-chr6-50030109-4	chr6	50030022	50030222	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80119.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	5.35914011817399	5.48379094832875	5.58613026299099	5.93648497991336	5.42627197922481	5.10740300408365	5.55791797843669	5.6328538303797	-0.31281309076386	0.307918992554597	0.620291106895446
Merged-chr6-94700209-3	chr6	94700077	94700277	+	966.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008377)	promoter-TSS (NM_008377)	-32.0	NM_008377	16206.0	Mm.245210	NM_008377	ENSMUSG00000030029	Lrig1	D6Bwg0781e|Img|LIG-1	leucine-rich repeats and immunoglobulin-like domains 1	protein-coding	3.49955403468392	3.17319021303088	3.54838606828251	3.6870433734974	3.07801491432478	3.13957221564371	3.21496548668264	3.09717285558614	-1.38793130140722	0.0156721003517211	0.108135365542376
Merged-chr11-94386496-4	chr11	94386397	94386597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	6479.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	8.47279779732088	8.41494039996046	8.59973680749247	8.41303249106736	8.22041156986815	8.24969254355346	8.35915944207476	8.24925634203197	-0.259571012062715	0.0846667958117729	0.316617519128201
Merged-chr5-96923651-4	chr5	96923462	96923662	+	919.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131152, intron 2 of 2)	intron (NR_131152, intron 2 of 2)	2290.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	3.59925565963136	3.70545138943732	3.41515612492887	3.7740887876253	3.83858360614888	3.88080116478347	3.93201578398803	3.75946469303376	0.61925099631533	0.187435849945688	0.485834323705768
Merged-chr17-8920557-3	chr17	8920467	8920667	+	828.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 3 of 21)	intron (NM_001347321, intron 3 of 21)	-67766.0	NM_025851	66931.0	Mm.67591	NM_025851	ENSMUSG00000023873	1700010I14Rik	-	RIKEN cDNA 1700010I14 gene	protein-coding	3.54480707580739	3.49531393534117	3.94702530885655	3.99836405719502	2.94121771594734	3.22954520247222	3.03264881481629	3.25091072328807	-2.55816883949781	4.44652073398488e-05	0.00102096419136874
Merged-chr8-120686269-4	chr8	120686160	120686360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17940.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	8.22128974867591	8.02958232621676	8.63589323628115	8.49880662056771	7.93006607141425	8.20247085196385	8.28016551944823	8.23479222458774	-0.260472133621176	0.176812705658574	0.472026837478258
Merged-chr3-16210121-4	chr3	16210031	16210231	+	919.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172677, intron 5 of 5)	intron (NM_172677, intron 5 of 5)	26966.0	NM_172677	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	5.14359487408804	4.66589388036286	5.14447811391012	5.11256316865961	5.09601417774574	4.77353799198109	4.66098961693164	4.91321227302605	-0.297510736834099	0.388584201216484	0.688981838974675
Merged-chr17-86293518-4	chr17	86293392	86293592	+	950.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	-6314.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	4.46226218942795	4.60929385740597	5.23739989414556	4.72830598368937	4.73822683817142	4.59497783814113	4.69257793997372	4.54956848888099	-0.292742740893937	0.438189036692808	0.726297851003868
Merged-chr7-97748343-4	chr7	97748264	97748464	+	890.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10117.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	3.87343686401486	4.30858266099634	4.33588005802659	3.62486432792287	4.26147818440308	4.10494794652479	3.802647181868	4.2112014841846	0.122838781125563	0.797882729572621	0.921862017583033
Merged-chr6-57034798-3	chr6	57034697	57034897	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-1116.0	NM_134187	171205.0	Mm.222638	NM_134187	ENSMUSG00000061208	Vmn1r8	V1rc32	vomeronasal 1 receptor 8	protein-coding	5.01309610779029	5.32460308384214	5.22982334563209	5.78878828312423	4.4725318374874	4.7162932070889	4.18848375780626	4.66643662596604	-1.75151305457772	4.66310584025825e-06	0.000139460172522581
Merged-chr7-126799816-2	chr7	126799698	126799898	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_007438)	promoter-TSS (NM_007438)	-544.0	NM_007438	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	6.50495847209325	6.54559740893107	6.06440161968564	6.21888524738332	6.60474392691011	6.50897289414149	6.35456213856965	6.53342266169264	0.241880994612625	0.294229695679653	0.606535224072776
Merged-chr7-12921822-4	chr7	12921743	12921943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009095)	promoter-TSS (NM_009095)	-468.0	NM_009095	20103.0	Mm.5291	NM_009095	ENSMUSG00000012848	Rps5	AA617411	ribosomal protein S5	protein-coding	7.35000570047123	7.54049836844515	7.05911650126617	7.22503835753535	7.16073945679458	7.43461377068628	7.26371936754956	7.32595948675512	-0.0139603889977235	0.94306388575056	0.97939909270739
Merged-chr10-61374308-4	chr10	61374235	61374435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	9188.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	5.72441473744767	5.70348172711191	5.4854782775311	5.74605547532391	5.45477661112075	5.63249351974115	5.85476582306471	5.67187802574449	-0.037876164570944	0.887477486305393	0.957799052224803
Merged-chr17-8225376-4	chr17	8225266	8225466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10677.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	5.8722721206551	5.72430526363915	5.54295413305336	5.38905960698415	5.39236545229984	5.57625396568993	5.31201274517591	5.45544145914396	-0.339718890960967	0.235384157517495	0.545408670462509
Merged-chr12-54981145-4	chr12	54981056	54981256	+	936.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 2 of 26)	MIRb|SINE|MIR	5180.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	4.67049800402173	4.72581245587171	4.50573840144617	4.87828362282877	4.67808930481594	4.8041582702569	4.57020075998674	4.70652884701376	-0.0593426166933071	0.864762624781905	0.949269846298694
Merged-chr5-90366179-2	chr5	90366079	90366279	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030886)	promoter-TSS (NM_030886)	6.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	6.52673261232728	6.5738108688131	6.76854612890573	6.2277620535512	6.66024332742496	6.84452891112367	6.57442027629738	6.47250330478449	0.176489460792205	0.444807516465753	0.731081677662176
Merged-chr15-66803902-3	chr15	66803798	66803998	+	726.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 1 of 7)	intron (NM_001029841, intron 1 of 7)	27931.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	3.74314506592809	3.86647958033273	3.5887520769713	3.8465495083577	3.88864080749206	3.39343888884013	3.46179425981283	3.34702408852919	-0.660415354901793	0.211904975687278	0.516740975730402
Merged-chr3-108850773-4	chr3	108850676	108850876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10274.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	6.44291930135991	6.40143110080964	6.3917408310809	6.23499921345628	6.54679790290157	6.65329158031295	6.12621427986988	6.64373574028428	0.218577834426889	0.342685523493825	0.6516462545027
Merged-chr2-4652121-4	chr2	4652008	4652208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356451)	promoter-TSS (NM_001356451)	27.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	5.37874654479849	5.33426661120645	5.64510049171957	5.26700360431362	5.70254365699699	5.43181601979274	5.26178539728114	5.34607114676283	0.0985113976837175	0.737895614484585	0.896555867875472
Merged-chr7-90043654-4	chr7	90043575	90043775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110364, intron 5 of 5)	intron (NR_110364, intron 5 of 5)	14516.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	7.12650589959781	6.77214693353134	7.60465071092742	7.50552074617239	7.27785567286164	7.0579502321444	7.36639237200884	7.15777169846609	-0.102143168810992	0.663119605945136	0.860406694220876
Merged-chr6-124756179-4	chr6	124756113	124756313	+	868.744446	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007881, intron 1 of 9)	G-rich|Low_complexity|Low_complexity	274.0	NM_007881	13498.0	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	3.86594297890356	3.67393624191502	4.15084511797577	3.72197396700332	4.24216990865118	4.09170619523781	3.9514959174462	4.0603781455262	0.65658826086592	0.135829695520082	0.410243322164528
Merged-chr1-144005836-4	chr1	144005715	144005915	+	979.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1666.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	5.20226127269082	4.81024106478817	5.29538575615459	5.30995230275813	5.35655612887368	5.27927253718665	5.26908503536911	5.40492945205458	0.278711892953814	0.360108884095731	0.665667435232172
Merged-chr13-98955848-3	chr13	98955800	98956000	+	815.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	28665.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	2.83940302701449	2.99127234982113	3.03894871678857	2.80008455638609	3.35195530956139	3.26926788374966	3.08748790439817	3.09759404012156	1.2132885824403	0.0343160160356847	0.183083603349519
Merged-chr6-115995691-3	chr6	115995592	115995792	+	929.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026376)	promoter-TSS (NM_026376)	-687.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	4.45153148587636	3.73668829890941	3.83382435039906	4.1549703291591	3.76675691369452	3.72129229983579	3.86969839703434	3.83165090173005	-0.774602665404538	0.103988069626119	0.354405880197153
Merged-chr3-19895672-3	chr3	19895525	19895725	+	793.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027985, exon 1 of 1)	non-coding (NR_027985, exon 1 of 1)	754.0	NR_027985	70808.0	Mm.427103	NR_027985	ENSMUSG00000048106	4632415L05Rik	AI662792	RRS1 ribosome biogenesis regulator homolog pseudogene	pseudo	3.48833301370256	3.66467786265262	3.87052738335605	3.45293065688443	3.50305009914356	3.28861193065661	3.58060949191873	3.17506493934207	-0.742806516838263	0.169511368200026	0.462161476887795
Merged-chr1-72107287-4	chr1	72107187	72107387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102092.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	7.06416256680289	7.11671483059066	6.92728993988784	7.25402892393306	6.87492706512238	6.85664059749354	6.93128725379168	7.07224362956704	-0.238570320315838	0.221429741924716	0.529466124713094
Merged-chr4-132474800-4	chr4	132474696	132474896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10875.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	6.39291256708287	5.70615546839132	5.92292754307019	6.17189747519141	5.71152316804591	5.82144969718266	6.10166101077413	5.94135553755802	-0.282966133123682	0.300460127551271	0.612432455247845
Merged-chr9-70585385-4	chr9	70585289	70585489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152142, intron 15 of 19)	intron (NR_152142, intron 15 of 19)	42674.0	NM_025690	66660.0	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	5.6876786169145	6.13854095263642	6.21594913927106	5.98873372855338	5.97183851300851	5.86626709659738	5.76393597009469	5.93139354278445	-0.210837981212739	0.407526947158548	0.703805909785231
Merged-chr3-148982528-4	chr3	148982486	148982686	+	965.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27951.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	5.34611982468732	5.60403317605239	5.64812819917744	6.02729127531531	4.67029717552472	4.69125593117195	4.80821422258924	4.49651340129935	-1.95903717075892	9.73259420765554e-09	5.17368426517337e-07
Merged-chr18-46613395-4	chr18	46613298	46613498	+	993.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15694.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	5.49096084442338	5.10724764212584	5.2328476095039	5.9078610042722	5.40959244592151	5.12820210340227	5.20706111619844	4.94486611887046	-0.540116028774987	0.116972067360086	0.378452490119253
Merged-chr9-102714023-2	chr9	102713928	102714128	+	619.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3776.0	NM_019764	56332.0	Mm.21145	NM_019764	ENSMUSG00000032531	Amotl2	AW549739|C79691|Lccp|MASCOT|mKIAA0989	angiomotin-like 2	protein-coding	2.59225295019476	2.49812042252611	2.53279067193799	2.45794076812817	2.31749977310546	2.28305723357966	2.32825485672259	2.46883726383418	-0.994143704218147	0.17210918401921	0.465340712956899
Merged-chr17-31108571-4	chr17	31108462	31108662	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 9 of 14)	intron (NM_009593, intron 9 of 14)	21049.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	3.81081833369365	3.36681760198416	3.47686704944222	4.30964743609119	3.65444120180227	3.8812810885165	3.74560813618439	3.65274636021689	-0.223598663773131	0.688899144873486	0.873037023352908
Merged-chr11-68548598-4	chr11	68548500	68548700	+	930.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004435, intron 18 of 19)	intron (NM_001004435, intron 18 of 19)	-7586.0	NM_146004	215723.0	Mm.131205	NM_146004	ENSMUSG00000048329	Mfsd6l	-	major facilitator superfamily domain containing 6-like	protein-coding	4.42336197141558	4.87840635857413	4.19089155751017	4.10048958946747	4.58747328578477	4.79219336548997	3.76471388614535	4.50379729688532	0.0662153480560218	0.89238625564747	0.959702310634513
Merged-chr3-88335197-3	chr3	88335107	88335307	+	908.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024246)	promoter-TSS (NM_024246)	-774.0	NM_024246	71913.0	Mm.34256	NM_024246	ENSMUSG00000001420	Tmem79	2310042N02Rik|2310074C17Rik|Matt|ma	transmembrane protein 79	protein-coding	3.78272045169749	3.67839472513252	3.68174971985263	3.68199927190285	4.02887362980815	3.28565621487978	3.61377379517122	3.8288227701045	0.0721074696978342	0.888492523958175	0.958180162421076
Merged-chr3-65002784-1	chr3	65002684	65002884	+	543.0	f0_balb.idr	intron (NM_001357358, intron 1 of 13)	intron (NM_001357358, intron 1 of 13)	53572.0	NM_001357358	16497.0	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	2.97426327694147	3.02703229578412	3.14701194895599	2.9689122538961	2.72865085222153	2.8088057435342	2.96399646577814	3.19770383263013	-0.405049826822994	0.511902380476306	0.775668292015302
Merged-chr17-72798025-4	chr17	72797920	72798120	+	880.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38608.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	4.08110411474239	3.74467879899973	4.08173974526579	3.85944366601171	4.1784361288655	3.79174543990563	4.10590327248524	3.6096335387304	0.0220236960120078	0.962600655235574	0.98666971636857
Merged-chr1-179960030-3	chr1	179959856	179960056	+	809.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346805)	promoter-TSS (NM_001346805)	-804.0	NM_001359541	226751.0	Mm.259655	NM_001033285	ENSMUSG00000026490	Cdc42bpa	A930014J19Rik|DMPK-like	CDC42 binding protein kinase alpha	protein-coding	3.76695232466909	4.0512059110491	3.55496725153563	3.84787312191144	3.55663570986381	3.34333640748483	3.8446432057415	3.43257774260569	-0.806243575631843	0.118094988197538	0.380167480661778
Merged-chr4-132308639-4	chr4	132308528	132308728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029468)	promoter-TSS (NR_029468)	-50.0	NR_029468	100039864.0	Mm.258912	NR_029468	ENSMUSG00000086290	Snhg12	2310005L22Rik	small nucleolar RNA host gene 12	ncRNA	6.089420529501	5.92887273292547	5.96241701467671	5.61308153420741	6.16361180986293	6.45215453234707	5.88647650054467	6.0237692098457	0.398580961052528	0.132599066200848	0.405565344042749
Merged-chr2-93943214-3	chr2	93943107	93943307	+	733.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13893.0	NM_001145034	620695.0	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2	predicted gene 13889	protein-coding	3.7042053772825	3.36463082626112	3.75663609792002	3.86456172287397	3.65083942919849	3.82344287097825	3.92755102550775	3.75446178221932	0.279862208503843	0.564541573061143	0.806797378143786
Merged-chr7-97108310-3	chr7	97108205	97108405	+	922.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	26554.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	3.90303312317746	3.83452356729745	3.95188296311012	4.44316101726354	3.47688945108625	3.55372005168408	3.73221746226179	4.08396196648147	-0.964785491547616	0.0610696052285895	0.261214676435657
Merged-chr3-86894666-4	chr3	86894568	86894768	+	976.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195500, intron 2 of 11)	intron (NM_001195500, intron 2 of 11)	26216.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	5.75482219293257	6.0225852335703	6.07351963685342	6.36536462718375	5.08798035519084	5.17692432797069	5.60055727012334	5.29348043306932	-1.32768033127126	7.26176342738268e-06	0.000207168360319708
Merged-chr13-23556591-2	chr13	23556491	23556691	+	720.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145713)	TTS (NM_145713)	1559.0	NM_145713	14957.0	Mm.247046	NM_145713	ENSMUSG00000052565	Hist1h1d	H1.3|H1D|H1f3|H1s-4	histone cluster 1, H1d	protein-coding	4.25392303300194	3.86789699420327	3.91730126444874	3.89487795437174	4.318044195124	4.14734316767074	4.39245129818877	4.25187378897295	0.767179406446201	0.0606926153201308	0.260319879998014
Merged-chr11-84141927-3	chr11	84141835	84142035	+	903.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12367.0	NM_172562	217031.0	Mm.45159	NM_172562	ENSMUSG00000018651	Tada2a	AV319371|D030022J10Rik|Tada2l	transcriptional adaptor 2A	protein-coding	4.23071754002073	4.61245342672975	4.36336164765436	3.46527125805035	4.25152095054478	4.69074669535583	4.11722935410685	4.13281716007435	0.193261946172883	0.703353020662571	0.880690314212345
Merged-chr2-150981562-4	chr2	150981470	150981670	+	950.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207204, intron 1 of 23)	intron (NM_207204, intron 1 of 23)	27828.0	NM_207204	78177.0	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding	4.77783815622155	4.15515063700111	4.46276265809135	4.55340030805522	3.87178770057462	3.85934537646508	4.518343995891	4.45982052191176	-0.696786313299426	0.12812051455519	0.398335376322348
Merged-chr2-38479736-4	chr2	38479649	38479849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-31948.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	6.27797684594806	6.25429920592082	6.38768427052422	6.66780223264022	6.18009154872426	6.13664214139972	6.37213033265958	6.25556438424382	-0.280838097188762	0.233176765633139	0.542798744737379
Merged-chr3-137611347-4	chr3	137611245	137611445	+	807.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12327.0	NM_030143	73284.0	Mm.250841	NM_030143	ENSMUSG00000046818	Ddit4l	1700037B15Rik|1700108M02Rik|REDD2|RTP801L|Smhs1	DNA-damage-inducible transcript 4-like	protein-coding	3.86698666177204	4.08533810706399	4.15120681473787	3.75816531126851	3.85365115607126	3.81833030974185	4.17340562971271	4.06095169568222	0.0488176179311645	0.912867233448376	0.967355963460984
Merged-chr6-149193761-4	chr6	149193658	149193858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30B_MM|LTR|ERV1	-5046.0	NM_001113424	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	8.33962937688223	8.37264945376991	8.16777225605339	7.89718390202411	8.37905843440597	8.60225739079643	8.42477576104318	8.05241560545147	0.225397213633978	0.241112477968793	0.551663395619392
Merged-chr12-32215318-4	chr12	32215224	32215424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6675.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	5.35501918650279	5.28940999237858	5.32901295993671	5.34497418099358	4.96641162494707	4.97346907162648	4.64330631341224	4.70611806593405	-0.951274422612683	0.00261507223406157	0.0287073143967102
Merged-chr11-114973041-2	chr11	114972935	114973135	+	737.625	f0_balb.idr|f1_balb.idr	Intergenic	RLTR44C|LTR|ERVK	-12618.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	3.51101055082055	3.54107148688	3.31841543255608	3.30851249480177	2.94994864607273	2.76282347985014	2.80838663237839	2.81453732646821	-2.62665046530387	0.000175824248992925	0.00326645372081704
Merged-chr7-74647527-4	chr7	74647410	74647610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92730.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	6.2248208100666	5.8478463661704	5.90474753686948	5.8182837614775	7.13641923027339	7.01607861157484	6.58936907634576	6.60384559534822	1.35355584763735	3.78921580183271e-08	1.7944949538167e-06
Merged-chr10-26375202-8	chr10	26375076	26375276	+	954.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172787)	promoter-TSS (NM_172787)	43.0	NM_172787	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	3.7375841768372	3.97702580883895	4.15049617160888	3.86596359910685	3.88951733544448	4.13530779042081	3.99338030473386	4.52577374179935	0.570237159212501	0.205684780112536	0.509409776048371
Merged-chr15-5243708-3	chr15	5243606	5243806	+	690.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008965, exon 1 of 3)	5' UTR (NM_008965, exon 1 of 3)	481.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	3.46461333743754	3.61811274077954	3.67880460638289	3.42212916503901	3.44426598054283	3.79746824243428	3.56192009904778	3.40395675445569	0.0407912886446299	0.934872927798894	0.97635719558922
Merged-chr6-83156411-2	chr6	83156309	83156509	+	744.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_023790)	promoter-TSS (NM_023790)	5.0	NM_027948	71837.0	Mm.17621	NM_027948	ENSMUSG00000030030	1700003E16Rik	AU041756	RIKEN cDNA 1700003E16 gene	protein-coding	3.62358599904976	3.86363269503614	3.73723408459281	3.80290304437029	3.86306312747792	4.06027774284891	4.05334389005926	3.84003114936441	0.539927675971977	0.221998078493746	0.530047563717821
Merged-chr1-119895185-3	chr1	119895091	119895291	+	955.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17977.0	NM_175106	66343.0	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	4.12000535339015	3.44754256103528	4.03551499854164	3.86379210688298	3.73064874818369	3.96738523454002	3.82976711707213	3.89359647468871	-0.0899462752691435	0.851147392538864	0.943894442930937
Merged-chr1-182140552-4	chr1	182140448	182140648	+	838.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15811.0	NM_012058	27058.0	Mm.273196	NM_012058	ENSMUSG00000026511	Srp9	9kDa	signal recognition particle 9	protein-coding	4.05709645600425	3.97704800044089	3.85551935905751	3.87897754511602	4.27796622789167	4.03081014830858	4.08557339075406	4.10111962027261	0.519544103921499	0.208740231467172	0.513049756063598
Merged-chr2-147022210-4	chr2	147022119	147022319	+	991.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356402, intron 1 of 28)	intron (NM_001356402, intron 1 of 28)	9220.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	5.54751369932354	5.19054598147344	5.26493614532028	5.56191545333953	5.37052302126925	5.08207668818257	5.35925743136562	5.59427212757254	-0.0791494688788836	0.792562826005956	0.919627897475503
Merged-chr14-30719305-1	chr14	30719205	30719405	+	805.5	f1_balb.idr	intron (NM_001166532, intron 1 of 20)	Lx3A|LINE|L1	3690.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	3.32369683340282	3.33249789337918	3.15308375611059	3.0287505284238	3.21213917143729	3.26421824868503	3.25683515665756	3.08922681289332	0.00173840527039482	0.997488994488064	0.999004785899535
Merged-chr19-29383578-4	chr19	29383476	29383676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 5 of 6)	intron (NM_021893, intron 5 of 6)	16138.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	7.38602970782199	7.71396293930786	7.23215937534162	6.85299748705352	7.40475623056935	7.51468173597407	7.21769044377091	6.93057959165514	-0.0545122780210326	0.824221853292452	0.932529363166064
Merged-chr11-106751655-4	chr11	106751562	106751762	+	863.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271372, exon 2 of 7)	exon (NM_001271372, exon 2 of 7)	436.0	NM_001033435	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	4.64419725102565	4.37228248959233	4.49191034431803	4.40931499233128	4.87779854985466	4.39877851834104	4.04601998880105	4.36095273798705	-0.0131575773050066	0.974834845656047	0.990970715209252
Merged-chr10-88334132-4	chr10	88334034	88334234	+	958.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 4 of 6)	intron (NM_027878, intron 4 of 6)	22941.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	4.53557228647262	4.55359748701934	4.20567800639282	4.71156696585912	4.89691216917673	4.66778835306118	4.67089604188774	4.53340001852502	0.380417888457906	0.308444084665608	0.620793493346942
Merged-chr4-57948121-4	chr4	57948016	57948216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 3 of 4)	intron (NM_011660, intron 3 of 4)	8295.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	6.6901093418021	7.32435375698049	7.57832641380329	7.41774450950087	7.27607484156548	6.85388454424653	7.44701819995466	7.22304503894388	-0.10438973002513	0.668786702316116	0.863259260919753
Merged-chr11-87466219-4	chr11	87466121	87466321	+	951.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	ORR1B1|LTR|ERVL-MaLR	38630.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	4.85230531291123	4.84857208296074	4.77970577673204	4.7504544362956	4.81363217717551	4.91480118006712	4.89865466273487	4.69894905406897	0.0595119909636292	0.854396909677654	0.945141310652665
Merged-chr4-136123599-4	chr4	136123480	136123680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20242.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	6.82921334535093	7.05926612311552	6.25193079430173	6.69290357000582	6.72905719486711	7.12341542030042	6.76819620633362	6.76977357602107	0.155954076159115	0.520515406247648	0.780787600139836
Merged-chr5-146811223-3	chr5	146811126	146811326	+	837.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16270.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	3.6276812487965	3.60799590641435	3.99690940414031	3.70188640349443	3.76373602089278	4.0736942774668	3.97903912897433	4.2046810032101	0.760346621143116	0.0965387574711371	0.3404276550923
Merged-chr2-164389755-4	chr2	164389651	164389851	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252563, intron 10 of 10)	CpG	-13443.0	NM_009036	19668.0	Mm.473794	NM_009036	ENSMUSG00000017007	Rbpjl	RBP-L|Rbpsuhl	recombination signal binding protein for immunoglobulin kappa J region-like	protein-coding	4.73786476563549	4.82766214120932	4.70129519605022	4.61886821573827	4.8124092428664	4.67170738915835	4.60186817867741	4.44831463794733	-0.146034423074932	0.675677919480072	0.866900613183491
Merged-chr19-28658700-4	chr19	28658585	28658785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175459, intron 2 of 10)	L1MC4|LINE|L1	-19539.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	6.56280656551266	6.30406847305821	6.71433568002452	6.79487695292426	5.47294402579843	5.99154837596641	5.42249581992318	5.80678333416231	-1.44420535534685	6.05086794848015e-08	2.71731690665532e-06
Merged-chr6-58661162-4	chr6	58661071	58661271	+	917.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355477, intron 2 of 15)	intron (NM_001355477, intron 2 of 15)	64499.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	5.06191511195679	4.88917967990204	4.99864180084492	5.13727213689024	4.71889600795412	4.61105372161794	5.03786076258164	4.74142809697598	-0.494181845680416	0.136368345978428	0.41091739052877
Merged-chr4-53125626-2	chr4	53125526	53125726	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	34269.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	5.5947071631499	5.72407005867423	5.41783693184001	4.93166135750966	5.40390875193744	5.28757127308062	4.81880719474294	4.88005239261699	-0.565810012963742	0.117782661747979	0.379631540762192
Merged-chr13-43785198-4	chr13	43785108	43785308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289915)	promoter-TSS (NM_001289915)	96.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	8.83204670034905	8.84995405546776	8.83342049022141	8.55611105716862	8.76503409097188	9.15325712924	8.96271265574287	8.70793187396659	0.17178200161802	0.31180017745803	0.623665218229603
Merged-chr2-44923327-2	chr2	44923227	44923427	+	781.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61705.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	3.16614888312157	2.9465578103314	3.27533435574253	2.82101395939059	2.94793355438408	3.22103450904304	3.20868520691701	2.98276929510315	0.15489504252737	0.796144779661822	0.921052599307061
Merged-chr2-25592013-4	chr2	25591923	25592123	+	982.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024616, intron 7 of 14)	intron (NM_001024616, intron 7 of 14)	-11924.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	4.68846251823412	4.69108143199633	4.94389697926541	5.13585924365487	4.76652602934825	4.39535230894204	4.78186368247825	4.97301185485521	-0.297706381484929	0.414524144815012	0.709094306748084
Merged-chr5-53194621-4	chr5	53194527	53194727	+	917.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172710, intron 2 of 23)	intron (NM_172710, intron 2 of 23)	18825.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	4.86274361845358	4.33481330373534	4.86356589097821	4.99191598530456	4.49348926327629	4.56537873109944	4.36801602024995	4.72045440596688	-0.547342027330131	0.150333430433373	0.4329904560923
Merged-chr12-3872663-2	chr12	3872563	3872763	+	992.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-10419.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	3.84317806749074	3.84715690927036	4.21599999919905	3.47168492414416	3.40882078752432	3.63622078110732	3.37670293707882	3.88858905078506	-0.828681379800469	0.123623934579091	0.389983722558397
Merged-chr4-123353675-2	chr4	123353575	123353775	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 91 of 92)	intron (NM_001199137, intron 91 of 92)	-10423.0	NM_007558	12163.0	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	3.4794282538196	3.40321224971609	3.09593412164119	3.88674347989067	3.27489698571064	3.53804255931867	3.71458055490489	3.53232238547928	0.0384589269912626	0.947624637602271	0.981331257394211
Merged-chr4-62330072-1	chr4	62329972	62330172	+	782.0	f0_balb.idr	intron (NM_001355385, intron 12 of 27)	intron (NM_001355385, intron 12 of 27)	30524.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	3.86326513471009	3.79706503465072	3.53286676775334	3.85557632527112	3.93378597096046	3.98436378536121	3.63905615558185	3.90923767769619	0.283957526185188	0.536945448872601	0.790858067095524
Merged-chr4-142065572-3	chr4	142065472	142065672	+	668.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	MIRc|SINE|MIR	-18726.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	3.32203459097315	3.15692765721581	3.67512076983938	3.46946554674187	3.50897245776368	3.43575959526475	3.1259310733961	3.13427644276893	-0.355248386032075	0.53231966261286	0.788044784116818
Merged-chr9-48558887-4	chr9	48558800	48559000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46223.0	NM_010924	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	7.60437701534752	7.91180715494807	7.49585746731966	7.56278676967919	7.73140388726724	7.85110428220828	7.55959374245678	7.59166462474182	0.0462894653389381	0.802599754327769	0.923936032101707
Merged-chr11-121706622-4	chr11	121706527	121706727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	4200.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	5.90315910286606	5.98322582102207	4.98300571720734	5.39842455392658	5.82562964539396	6.01260364770678	5.56540124189587	5.53450426819835	0.208082633930992	0.535929116738063	0.790052576429015
Merged-chr19-38054475-3	chr19	38054395	38054595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	promoter-TSS (NM_001360663)	promoter-TSS (NM_001360663)	-489.0	NM_028293	74107.0	Mm.9916	NM_028293	ENSMUSG00000024989	Cep55	1200008O12Rik|2700032M20Rik	centrosomal protein 55	protein-coding	6.01183157979652	6.10808020081072	6.58895528277996	5.92255200975536	6.31106484397853	6.60576958201181	6.59892012703822	6.56925031746699	0.52428791570449	0.0377784087986333	0.194345966125051
Merged-chr14-67211919-4	chr14	67211823	67212023	+	952.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21369.0	NM_010095	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	4.57334077896202	4.65134314817962	4.25125937215723	4.54630495239655	4.86963627608494	5.09600309932537	4.7442414146627	4.57115468833146	0.679071722851996	0.0613260712324868	0.262005688734463
Merged-chr18-50014739-4	chr18	50014635	50014835	+	961.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	-16249.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	4.64963946935248	4.87987229438455	4.65038139173185	4.62957372890034	5.03560409754422	4.60974288425963	4.88143386617912	4.47534149447655	0.164816644695926	0.646373605749037	0.851302848618114
Merged-chr1-46078110-3	chr1	46077995	46078195	+	660.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160386, intron 2 of 65)	MTD|LTR|ERVL-MaLR	11357.0	NM_001160386	227058.0	Mm.296880	NM_001160386	ENSMUSG00000041144	Dnah7b	Dnahc7b|Gm107	dynein, axonemal, heavy chain 7B	protein-coding	3.88283979790509	3.77832114756859	3.71987302222812	3.51713148191021	4.17237693915356	4.05697188035314	4.13966500291622	4.07110399593182	1.11966250862422	0.00970027040831068	0.0772321641379358
Merged-chr15-99045086-4	chr15	99045005	99045205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-10069.0	NM_001163588	19132.0	Mm.2477	NM_013639	ENSMUSG00000023484	Prph	Prph1	peripherin	protein-coding	5.27689825845445	5.63839180889884	5.21393836443441	5.44434022129991	5.05691384499505	5.72783742021073	5.12169924236141	5.17723398566965	-0.214084813983712	0.505692463569863	0.771556252339237
Merged-chr7-92630362-2	chr7	92630270	92630470	+	682.25	f0_balb.idr|f1_balb.idr	intron (NM_028665, intron 2 of 11)	intron (NM_028665, intron 2 of 11)	6772.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	3.67620236574296	3.99962833431492	3.72854764648091	3.99689732896059	3.50522129523157	3.68295558549191	3.37067210042727	3.56450349692836	-1.05281800740143	0.0329210849689113	0.178102143877946
Merged-chr5-140396764-3	chr5	140396671	140396871	+	728.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7463.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	3.05071681866871	2.94732528500308	3.2289048111572	2.51136349439602	3.44615526875737	3.34505988027523	2.90859943080793	3.17045804519526	1.07006098708947	0.112656131530141	0.371152547381804
Merged-chr6-72101108-4	chr6	72100989	72101189	+	882.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	3481.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	4.1922676135382	3.72181492304844	4.23339114270414	4.52182099358157	3.982479672077	3.62165679256673	3.62271344268521	3.86438719810448	-1.14198349477057	0.0227444609587343	0.13933453710145
Merged-chr10-85874182-6	chr10	85874085	85874285	+	823.027771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133993, intron 1 of 14)	intron (NM_133993, intron 1 of 14)	2354.0	NM_133993	103136.0	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog, endonuclein	protein-coding	4.38096013180019	4.43226010419519	4.30406521904507	3.67720835985851	4.06941678756642	4.00450908774158	3.86538843473115	3.87871216568602	-0.689316325656776	0.148603232534441	0.430423321537467
Merged-chr2-166327164-4	chr2	166327078	166327278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	53270.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	5.50764363077195	5.37285995169393	5.65997162503162	5.66655060326905	5.41858384597132	5.24200675751777	5.27894653320983	5.50473883894676	-0.341952905014943	0.22301831405477	0.531105777245958
Merged-chr11-77980839-3	chr11	77980731	77980931	+	987.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1985.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	4.15827181774178	3.63861264490261	4.34985361416698	4.13551050199152	3.60727852163578	3.71777797537687	4.01050709430685	3.71760012604905	-0.914521590395456	0.0603143932225804	0.259418586935165
Merged-chr2-147010366-4	chr2	147010252	147010452	+	695.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-2647.0	NM_001356403	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	4.081279517327	3.78565601546834	3.65398801977659	3.90968365055512	4.51712950282483	4.15990476395948	4.10804248258536	3.77254796637596	0.811097429014952	0.0814485033474308	0.309632966036617
Merged-chr12-70783065-3	chr12	70782967	70783167	+	659.783325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42447.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	3.10841443358657	3.10929980637964	3.22466964333255	3.58317699050361	2.9716739680266	2.94740863390184	2.97251987109979	3.27702189106062	-0.932302644212732	0.127956651041748	0.398034545253937
Merged-chr8-34744377-3	chr8	34744283	34744483	+	955.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63227.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	3.39548672074493	3.28926276512554	3.39587803511944	3.38585142970588	4.89106786539847	4.76237146125422	4.4296313898244	4.25265750643705	3.41861822341007	3.3881536830816e-10	2.38777614859471e-08
Merged-chr13-60358901-4	chr13	60358799	60358999	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153428.0	NR_036449	100503759.0	Mm.38101	NM_177810	ENSMUSG00000050765	Gm5084	A030007L22|EG328264	predicted gene 5084	ncRNA	5.45321490660871	5.86043363668606	5.56037568391942	5.56790026243713	5.407828039327	5.28468124354454	4.96853602879757	5.0656568630405	-0.738821547938595	0.0145865025782759	0.102776941894585
Merged-chr12-73967851-3	chr12	73967753	73967953	+	811.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178392, intron 1 of 9)	intron (NM_178392, intron 1 of 9)	3323.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	4.77029411340155	4.67488659014751	4.12667861836809	4.03922090098079	4.28675532609701	4.15053131897238	3.83948813875983	3.85205687513794	-0.94966379964084	0.0469311706512073	0.222775178111523
Merged-chr11-115859751-4	chr11	115859649	115859849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	35691.0	NM_001252532	217325.0	Mm.290450	NM_145438	ENSMUSG00000020782	Llgl2	9130006H11Rik|Llglh2	LLGL2 scribble cell polarity complex component	protein-coding	6.83872059975426	7.09834383892666	6.5291104979299	6.45275585209176	6.82104240632262	6.48804895429378	6.39123926868448	6.4730675694398	-0.267975445089146	0.28247883445549	0.594622374096745
Merged-chr2-181409792-4	chr2	181409678	181409878	+	947.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028125)	TTS (NM_028125)	14610.0	NM_027656	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	4.66778869405655	4.53352686952686	4.32169443419407	4.75902928225428	4.60286599756943	4.68095090371905	4.88557685210832	4.50386335207372	0.170927782627208	0.640629911341965	0.848250394542287
Merged-chr18-39369569-4	chr18	39369469	39369669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 21 of 21)	intron (NM_001361073, intron 21 of 21)	117676.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	6.92295234566337	7.03004563207706	7.03916582004859	7.18688646740196	7.05625067652452	6.92982105258688	7.17402508999506	7.03420976210578	-0.00753809327017341	0.968496918610685	0.988694268692349
Merged-chr17-37050490-10	chr17	37050452	37050652	+	948.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019439, intron 5 of 22)	intron (NM_019439, intron 5 of 22)	4586.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	4.43042983832627	4.1677333878877	4.43114339397038	4.43920138875039	4.11275978904347	4.34358728694799	4.33001432250011	4.01363244671642	-0.420838831547011	0.290272413877226	0.602422956741611
Merged-chr16-44138353-4	chr16	44138253	44138453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	906.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	5.53100106210403	6.21129534420514	5.90167736462469	5.6294209793347	6.18914823270675	6.18588626738016	5.70108414359241	5.98591544740697	0.305626846980749	0.28424647334516	0.596212390359036
Merged-chr2-122569300-2	chr2	122569200	122569400	+	627.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	41977.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	2.49756960178131	2.4350272225638	2.49779839727625	2.0737724328384	3.24552833945976	3.02253048864494	3.19862526081377	4.05375558044627	7.40976504804473	1.06849664564158e-12	1.13176373125182e-10
Merged-chr11-110372774-4	chr11	110372688	110372888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26314.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	6.49938451200844	6.51176253283117	6.44978380514615	6.44634266954043	6.52384121585228	6.33838409063673	6.59277382455828	6.6217800947715	0.0742423721839517	0.722687921817959	0.88928524667289
Merged-chr6-92092250-4	chr6	92092171	92092371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347342)	promoter-TSS (NM_001347342)	-162.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	8.7550346037399	8.56513216342001	8.80505138002158	8.83963964939694	8.60220052754424	8.84430918789385	8.88260492029134	8.55912365955058	-0.0245127709740595	0.879237459507848	0.954784248406626
Merged-chr11-115696788-4	chr11	115696693	115696893	+	817.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	2741.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	3.98997191118086	3.59669507126477	3.6070650217051	3.84749500063585	4.07510610394569	4.33525537219999	3.82391446400245	4.16496771964519	0.911090051319446	0.0465849572523399	0.221901269642261
Merged-chr13-3782707-4	chr13	3782596	3782796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21622.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	6.77772084976841	6.59404355890679	6.87031773393274	6.57330014299465	6.36269704109201	6.65032901199684	6.71709162573206	6.01753303157832	-0.349496602242774	0.149453386602253	0.431699643087482
Merged-chr1-134560534-6	chr1	134560385	134560585	+	912.744446	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_152895, exon 1 of 27)	exon (NM_152895, exon 1 of 27)	307.0	NM_152895	75605.0	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	3.88824797136599	3.95786206719169	3.83500773783868	3.78127349427918	4.26060779272359	4.06286251185753	4.11002056240794	4.12598391079064	0.771711589872802	0.0617639610753004	0.262954452354676
Merged-chr11-77196967-4	chr11	77196873	77197073	+	947.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-8005.0	NM_176965	319634.0	Mm.108786	NM_176965	ENSMUSG00000050944	Efcab5	4930563A03Rik	EF-hand calcium binding domain 5	protein-coding	5.12727089415733	5.0235478497317	4.82727806794831	5.05260817733524	4.8557099054551	4.75740796888774	4.87717381000359	4.74647029244088	-0.406345710280323	0.206349217963607	0.510269223695456
Merged-chr7-100944455-4	chr7	100944365	100944565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	-12304.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	6.33739892013035	6.36403562887952	6.26510479676676	6.55798363329507	6.05142101168569	6.073766347307	6.21416755131535	6.35166923201418	-0.34140679245173	0.138913488822681	0.414457946133613
Merged-chr12-81907772-3	chr12	81907651	81907851	+	834.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 3 of 35)	intron (NM_018814, intron 3 of 35)	47721.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	3.93467550594859	4.01803011347628	3.93529361076998	3.89794001780984	3.58158740342102	3.51219622716148	3.31881301138495	3.5217719402238	-1.43648036716506	0.00368904815891328	0.0375708626274557
Merged-chr13-95883063-4	chr13	95882980	95883180	+	798.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	8842.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	4.49658280695657	4.36570282219718	4.29638490314125	4.66432101737944	4.10279553782921	4.23462206612391	4.14084383815223	3.82845653439472	-0.969309619800932	0.0191650875462019	0.124307614949071
Merged-chr12-81860881-4	chr12	81860756	81860956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 1 of 35)	CpG	826.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	5.79314311392423	5.74411680654726	5.81589832677911	5.24394095770939	5.33302991095462	5.25748415387725	5.05160655527096	5.72251633068646	-0.50485770532712	0.117840832833121	0.379758585566929
Merged-chr2-22748186-4	chr2	22748068	22748268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26159.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	6.54715230056533	6.49852521362251	6.69800596563936	6.3675380927186	6.43948223522263	6.65835827189101	6.43287439079556	6.31755247023876	-0.0829754824933294	0.706086226132696	0.881879743016467
Merged-chr9-7347353-4	chr9	7347228	7347428	+	969.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001320076)	promoter-TSS (NM_001320076)	-46.0	NM_001320076	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	5.30420566795307	5.57277253211204	5.27483737500771	5.85049697051919	5.02575801345924	5.53742222558331	5.01568872230544	4.50215362975372	-0.845235228143234	0.0220999391617232	0.136906141827006
Merged-chr16-57499595-4	chr16	57499473	57499673	+	794.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-49669.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	4.18225347686734	4.23439071468196	4.22758000862506	3.67781665381631	4.250867955839	4.11128755763368	4.25117998672564	4.30970224512947	0.382177926484998	0.379652262798103	0.682157007046657
Merged-chr11-70151273-4	chr11	70151169	70151369	+	762.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-15354.0	NM_001204252	17312.0	Mm.252405	NM_010796	ENSMUSG00000000318	Clec10a	CD301a|M-ASGP-BP-1|Mgl|Mgl1	C-type lectin domain family 10, member A	protein-coding	3.57496020084066	3.78554391035865	3.19226435253121	3.51379830462265	3.74148868058744	3.80071014911591	3.80973176141922	3.57349420322242	0.615477411501777	0.224013214603719	0.532128184797041
Merged-chr2-14324839-4	chr2	14324718	14324918	+	966.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 25 of 29)	RLTR16B_MM|LTR|ERVK	-63580.0	NM_001012305	277468.0	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	5.0192063552999	5.0028667765137	4.43335970848851	4.72913678798768	4.77681282435223	4.87571553418707	4.89844042527313	4.81315508584131	0.05138085363069	0.882376653763477	0.95572901330316
Merged-chr15-103165642-4	chr15	103165557	103165757	+	927.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2373.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	4.91969275323216	4.36403468925183	4.55728764612988	4.27657778159266	4.72302687634033	4.69027690209544	4.79859346349503	4.74871573206825	0.445632180828769	0.23111015858586	0.540647495139858
Merged-chr7-101386104-4	chr7	101386055	101386255	+	920.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027180, exon 2 of 30)	exon (NM_027180, exon 2 of 30)	629.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	4.33567802346018	4.83198819472118	5.04980426053895	4.4564523245744	4.22569579122357	4.03659120880544	4.12265344290672	4.18933269674564	-1.28376842392235	0.00250395932779497	0.027787546147976
Merged-chr9-59760746-4	chr9	59760663	59760863	+	943.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173018, intron 1 of 43)	intron (NM_173018, intron 1 of 43)	9589.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	4.42841563411329	4.78800670549395	4.09117403546598	4.01214409879225	4.39323232067691	4.75974701423427	4.17892666292864	4.65871160798473	0.343523548192834	0.43391027012412	0.723273830118053
Merged-chr8-105362095-4	chr8	105361958	105362158	+	871.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081332, intron 12 of 15)	intron (NM_001081332, intron 12 of 15)	-13323.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	3.6737945693296	3.43875611645998	3.5627228345931	3.53166304883344	3.62258707264386	3.94680499730195	3.89931449853054	3.82318416395441	0.825338864432764	0.0770768959366895	0.300156273983894
Merged-chr17-27165610-4	chr17	27165522	27165722	+	893.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173027, intron 1 of 5)	intron (NM_173027, intron 1 of 5)	2142.0	NM_173027	271424.0	Mm.209679	NM_173027	ENSMUSG00000024210	Ip6k3	D830007E07Rik|Ihpk3	inositol hexaphosphate kinase 3	protein-coding	4.08508085676075	3.96018302606968	3.83816205164085	4.01689025103734	4.16104183745177	3.9021811941547	4.1945468987818	3.88942679681925	0.187505419742194	0.660282620907934	0.858760719807152
Merged-chr16-15986766-1	chr16	15986666	15986866	+	682.0	f0_balb.idr	intron (NM_001355731, intron 7 of 18)	intron (NM_001355731, intron 7 of 18)	99480.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	3.5870802413782	3.36099618224946	3.73599359750739	3.50823929987239	3.85491328827536	3.40606634558337	3.28585497069918	3.77907480566697	0.197722000693657	0.709852537094752	0.883795587508612
Merged-chr2-124579470-4	chr2	124579394	124579594	+	944.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-30802.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.81967573470938	4.37474627671201	4.64774793751018	4.86374096502522	4.42639007566114	4.11078819197364	4.58841854407073	4.30779023369901	-0.727743509638502	0.0636464541158875	0.267937719275772
Merged-chr2-71873129-4	chr2	71872962	71873162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172665)	promoter-TSS (NM_172665)	-162.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	7.71399643614037	7.46116989118051	7.54766988930099	7.61154574080822	7.47021132934584	7.5725678324882	7.60519540850986	7.32782855183273	-0.118892732635533	0.499248595592539	0.768235079100557
Merged-chr15-59829942-4	chr15	59829860	59830060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35001.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	6.23561157164394	6.06431568251713	6.40107852122258	6.76331812732001	6.35802384053483	6.10809293272595	6.20480278885933	6.30791332984227	-0.238726093984212	0.354744298522838	0.661365305978239
Merged-chr10-127609835-5	chr10	127609745	127609945	+	954.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 3 of 88)	intron (NM_008512, intron 3 of 88)	11303.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	3.61913315887407	3.72640330533724	3.85485073581671	4.04172681393487	3.10745727740434	3.16002843183133	3.32036896260486	3.45271298056575	-2.01464064281806	0.000338375164554751	0.00560381708651526
Merged-chr9-119402025-4	chr9	119401917	119402117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313757)	promoter-TSS (NM_001313757)	-161.0	NM_007397	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	7.79958801736447	8.01592746036203	7.78494336608374	7.81047836910214	8.13485178607399	8.28605930745828	8.11836718312435	7.95877822318794	0.351457196674953	0.0349718753466425	0.185190054360943
Merged-chr12-4151209-4	chr12	4151107	4151307	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	17054.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	5.26492335871146	4.29133914124484	5.56427492311331	5.952103850614	4.49386126274133	4.20598290873109	4.6027499311784	5.08153583790432	-1.46027067188699	0.0530047131315719	0.240108920508768
Merged-chr13-58067927-4	chr13	58067817	58068017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 6 of 16)	MIRc|SINE|MIR	34511.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	7.60649331039172	7.58291749282482	7.48133724485835	7.46580438393789	7.63438004724136	7.61012388756444	7.83827208921027	7.32574564185292	0.110658061705634	0.548595424453984	0.797514668901371
Merged-chr8-82398317-4	chr8	82398218	82398418	+	800.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	4268.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	4.12846639844199	3.75292804845943	4.12913051654867	3.91353007667693	3.76881515364728	3.62603841077868	3.73527471255504	3.95119034264002	-0.593603659084599	0.197157788985315	0.498437110190953
Merged-chr1-105780595-4	chr1	105780488	105780688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009399)	promoter-TSS (NM_009399)	-135.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	5.42828186802306	5.64140840549508	5.40010372371111	5.54091329166111	5.62152857348227	5.35311987249316	5.31348921127355	5.42543858744307	-0.116300592716799	0.676470346134971	0.867170024268651
Merged-chr2-37970163-4	chr2	37970106	37970306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 11 of 21)	intron (NM_146122, intron 11 of 21)	193957.0	NM_001163566	241324.0	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	5.64698560816999	5.97309394366351	5.83592435049535	5.70258697186085	5.41553044635381	5.44568834471852	5.33873048395336	5.39275368785555	-0.671714300416226	0.0126777030123455	0.0934340673758272
Merged-chr9-44213693-4	chr9	44213601	44213801	+	943.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 1 of 15)	intron (NM_007619, intron 1 of 15)	20345.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	4.77304675844327	5.24756664798304	5.25200017827901	5.43765547222209	4.77929653315392	5.03053791302477	4.79209215599262	4.96244675788698	-0.632079648179328	0.0605515851489176	0.260052547978977
Merged-chr16-17804700-4	chr16	17804566	17804766	+	943.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153790, intron 8 of 10)	intron (NM_153790, intron 8 of 10)	7384.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	4.85586294339324	4.60679991076321	4.34748254834445	4.58522364349568	4.39121278707875	4.52489138372007	4.54690446113017	4.78725656562815	-0.0978374939354582	0.791658592513924	0.919252187122779
Merged-chr9-90060492-4	chr9	90060396	90060596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007801, exon 2 of 12)	exon (NM_007801, exon 2 of 12)	6229.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	6.95356524819267	7.49838112035396	6.85834305610748	6.96206839883324	7.36563373547354	7.3610618047249	6.85174576362116	7.01445139420054	0.103556147438644	0.661589181099636	0.85945541323944
Merged-chr7-120205757-4	chr7	120205641	120205841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026458, intron 1 of 30)	L1MB5|LINE|L1	1777.0	NM_026458	67928.0	Mm.158178	NM_026458	ENSMUSG00000062017	Abca14	1700110B15Rik|4930539G24Rik	ATP-binding cassette, sub-family A (ABC1), member 14	protein-coding	5.54564823400934	5.33587975870357	5.71397169037449	5.64317809368026	5.24607080480647	5.15028809314952	5.43930834155421	5.31728004837167	-0.494650118370789	0.0832421114842277	0.313579796418938
Merged-chr15-12206774-4	chr15	12206738	12206938	+	862.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 1 of 15)	intron (NM_001356498, intron 1 of 15)	1810.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	3.6171684111291	3.72168644097808	3.92041975612503	3.81102354039997	3.80429480810958	3.73383266958124	3.7118802697615	3.77593261290693	-0.0462103300437539	0.918880526216775	0.970184632138008
Merged-chr6-15758677-4	chr6	15758565	15758765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	38004.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	8.38482697558016	8.39585419145788	8.90874891778679	8.72323852894507	8.56836591863975	8.45663860074331	8.39481217341627	8.47943900080469	-0.184233422844724	0.300107679168858	0.612248910735458
Merged-chr1-87007902-3	chr1	87007798	87007998	+	902.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172157, intron 14 of 21)	MIR|SINE|MIR	82030.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	3.30282184053734	3.33327963641657	3.41379173548236	3.74931509295836	3.167100254028	3.00947900145062	3.23281422907387	3.4118700525686	-0.953429399060763	0.0977729291104654	0.342581788969445
Merged-chr7-90410138-2	chr7	90410038	90410238	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289584, exon 20 of 20)	3' UTR (NM_001289584, exon 20 of 20)	-16174.0	NM_027298	70054.0	Mm.307198	NM_027298	ENSMUSG00000044362	Ccdc89	1700019B01Rik|AU022100|BOIP	coiled-coil domain containing 89	protein-coding	2.93562479844181	2.83943525542263	3.0534280380784	2.77756568945841	3.06883712666545	3.04499171378652	3.04122270427181	2.6631698852626	0.294586958847116	0.635547109594846	0.845768274792969
Merged-chr10-84381738-3	chr10	84381648	84381848	+	663.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 4 of 6)	MER44B|DNA|TcMar-Tigger	58723.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	2.89231386869129	3.03595621409263	3.06344011108972	3.12856478311877	2.6559193575574	2.56750120251239	2.8823824947752	2.76356852867961	-1.51486675241039	0.0235018560037395	0.142345014337149
Merged-chr1-92906959-4	chr1	92906879	92907079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175118)	promoter-TSS (NM_175118)	-10.0	NM_175118	67446.0	Mm.46179	NM_175118	ENSMUSG00000047067	Dusp28	0710001B24Rik|AV005521	dual specificity phosphatase 28	protein-coding	7.10850930175964	7.27360113660269	7.17015268166072	7.38832652200724	7.5356824543999	7.57322535718203	7.61592641276148	7.44880712987793	0.391647786903602	0.0290351335227945	0.163828122791834
Merged-chr10-80603046-7	chr10	80602932	80603132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019575, intron 1 of 6)	CpG	150.0	NM_019575	56214.0	Mm.273170	NM_019575	ENSMUSG00000113949	Scamp4	2410022D05Rik|AI448940|AU022392|AW742369|Sc4	secretory carrier membrane protein 4	protein-coding	6.62189686253632	6.94583851315558	6.99687670709545	6.18662964935784	6.44553481269012	6.59858439418081	6.57362514316775	6.64905592958984	-0.213327090355616	0.405755566582448	0.702456276834042
Merged-chr7-67242184-4	chr7	67242084	67242284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291195, intron 8 of 10)	intron (NM_001291195, intron 8 of 10)	19568.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	6.55390564754404	6.94940361556755	6.76018466657287	6.91095620295546	6.80009845603608	7.02087834311133	6.93865068512618	6.66487195774482	0.0664489692136289	0.752698381626599	0.902626829735826
Merged-chr12-4915694-4	chr12	4915600	4915800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1653.0	NM_001099628	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	5.83610944582276	5.96092223077222	5.97802645594488	6.36345418115309	6.07708143457931	6.21801145887111	5.80799884446923	6.1979781425955	0.0172967210713655	0.947816815297138	0.981348536548879
Merged-chr9-114394921-4	chr9	114394826	114395026	+	896.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4214.0	NM_019922	56693.0	Mm.20904	NM_019922	ENSMUSG00000032431	Crtap	5730529N23Rik|CASP|Leprel3|P3h5	cartilage associated protein	protein-coding	4.27120210266228	3.82622112781545	4.44079101145805	4.48469211373201	4.26492319446097	4.30489182891361	4.20748514342844	4.5866213525214	0.139607017914177	0.74450287244604	0.899296531468148
Merged-chr6-136980523-4	chr6	136980416	136980616	+	941.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25993.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	4.2131935506874	4.26585545135461	4.3613716924588	4.53044319032249	4.62984847389969	4.74707957170764	4.59248371354705	4.85351500366186	0.754371399710265	0.0415858606631966	0.206528240905596
Merged-chr1-151927562-3	chr1	151927504	151927704	+	860.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 3 of 5)	B1_Mur1|SINE|Alu	162716.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	3.2067268979019	3.28459683451557	3.31866309717764	3.23807727920975	2.96854554376785	3.25862111385521	3.01031409699558	3.31677092522802	-0.466525245444483	0.406690905073363	0.703078520686297
Merged-chr7-19824333-4	chr7	19824230	19824430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1575.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	7.84775860954343	7.83512024117548	7.83443397370848	7.51617989622835	7.8709418596563	7.71412207419613	7.825498868546	7.26149049586046	-0.0846470878521007	0.676536666917708	0.867197108600875
Merged-chr15-64278295-4	chr15	64278195	64278395	+	918.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	34378.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	4.30529417775428	4.5343413483822	4.48330430025204	4.70475958656696	4.52426048366607	4.28056497596664	4.50352802027624	4.70704470612884	-0.0350462864593469	0.926089621845119	0.972795068337101
Merged-chr6-13607801-5	chr6	13607628	13607828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028990, intron 1 of 4)	CpG	370.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	7.14529933690876	7.49766961302726	7.20575119820568	7.34262758188229	7.53891902049434	7.80148883044809	7.52806745969908	7.42267240529613	0.356489192091023	0.0593848398785984	0.256848363475649
Merged-chr12-84288681-4	chr12	84288580	84288780	+	679.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252625, intron 1 of 9)	B3|SINE|B2	3384.0	NM_001252626	77219.0	Mm.246127	NM_029880	ENSMUSG00000072946	Ptgr2	1810016I24Rik|9130222H03Rik|9630002F03Rik|AI838763|B830026H24Rik|PGR-2|PRG-2|Zadh1	prostaglandin reductase 2	protein-coding	3.5900133469778	3.24669635478367	3.34623181640592	3.62531796412958	3.91725392376362	3.91726095362393	3.68212353890048	3.84068269431377	1.12753669980918	0.0245364987610505	0.146539719029046
Merged-chr14-66190503-4	chr14	66190392	66190592	+	933.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 2 of 30)	intron (NM_001162366, intron 2 of 30)	23332.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	5.03735976860973	4.97571590316312	4.79135727531905	5.12110356501199	5.06898297210929	5.04027646993733	4.64786323642907	4.62268162431797	-0.250460306156529	0.464657606651743	0.745523090592339
Merged-chr18-36733825-5	chr18	36733773	36733973	+	977.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-1197.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	5.39689478400127	5.25144144937736	5.32112430266124	4.40723644032553	4.85389736859068	5.06031238089349	4.74441810588829	4.54288323698283	-0.642912562578363	0.11137962161681	0.368698618619051
Merged-chr11-50430977-4	chr11	50430878	50431078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172557, exon 1 of 18)	exon (NM_172557, exon 1 of 18)	133.0	NM_172557	216724.0	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding	5.71817499010505	5.55725384053193	5.71918108671936	5.24097407510959	5.681513098159	5.37390481177291	5.53881210325099	5.87203143946285	0.134207516883435	0.64711458866113	0.851605116430591
Merged-chr3-97230352-3	chr3	97230274	97230474	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3010.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	3.14936492880781	2.99290715635327	3.08726517805689	3.25674750915679	3.1132874856132	3.19761928759244	3.35907326890461	3.46966722642245	0.580924742869506	0.300138479942672	0.612251288689364
Merged-chr12-110485714-4	chr12	110485602	110485802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012023)	promoter-TSS (NM_012023)	-37.0	NM_001081457	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	6.06073172188821	6.18183744169968	5.72223783982255	5.80927591463717	6.12163037910491	6.53712099431729	6.11269950806728	6.28989922822276	0.492995719494629	0.0522504356381443	0.238024560530398
Merged-chr4-8645711-3	chr4	8645613	8645813	+	780.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44693.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	4.21555697795988	4.54220047437849	4.62716283989192	4.51624773210722	4.04500956311285	4.52626717174701	4.245155431017	4.16437913310864	-0.571493509636738	0.153754749461355	0.438641655787968
Merged-chr1-34473227-4	chr1	34473159	34473359	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 13 of 14)	intron (NM_011206, intron 13 of 14)	13513.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	5.23334324755837	4.77901327884334	5.00062786396305	5.12445353993556	5.11058929430834	5.43703448376879	5.3510444955408	5.37436022816763	0.495772457687533	0.109350997818187	0.365191500041067
Merged-chr8-123041251-4	chr8	123041137	123041337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	1047.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	6.73625959033433	7.06811069135449	6.28963993523646	6.72563140489295	7.09503315380344	7.19640732724452	7.15281277086518	6.91489058879607	0.494046479328088	0.03008979506992	0.167534537177866
Merged-chr1-172377227-4	chr1	172377111	172377311	+	963.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026234, exon 1 of 1)	exon (NM_026234, exon 1 of 1)	680.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	4.73177349895358	4.11382309778652	4.92272752687614	4.41371211198012	4.31306682908791	4.46297635133925	4.31385977063722	4.54535879841445	-0.366567154589676	0.373116393476243	0.676782538167593
Merged-chr16-33178587-4	chr16	33178484	33178684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6487.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	5.45203615286237	5.24977681849838	5.24840626471691	5.28117758713264	5.38288249946527	5.3911833329817	5.34267793053599	5.33648962221201	0.10375123848793	0.70968403531539	0.883704992355642
Merged-chr2-76673852-4	chr2	76673730	76673930	+	757.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010222)	promoter-TSS (NM_010222)	-732.0	NM_001355080	14231.0	Mm.24720	NM_010222	ENSMUSG00000002732	Fkbp7	23kDa|FKBP-7|FKBP23	FK506 binding protein 7	protein-coding	3.79189423906575	3.64393377505313	3.74243552061523	3.45247643561521	4.07767436173021	3.5090788057715	3.77629983455734	3.68831134144293	0.414498194743949	0.39951448210166	0.697643494012399
Merged-chr15-101155257-4	chr15	101155171	101155371	+	879.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-18801.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	3.51416786478778	3.28046501642984	3.46347530861011	2.84250975027725	3.35042796549741	3.47064066762598	3.22381643834434	3.40814680406689	0.254751727250994	0.664508616531967	0.861009602629657
Merged-chr17-88043024-3	chr17	88042922	88043122	+	920.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	21910.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	4.01217891720569	4.25617219286731	4.16057677206417	4.14245651860191	4.54871833543645	4.08223332363019	4.23148279267602	4.11071200567139	0.309324432467997	0.452824197432317	0.73705030775748
Merged-chr9-114723546-4	chr9	114723434	114723634	+	736.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_146229, exon 13 of 13)	3' UTR (NM_146229, exon 13 of 13)	-7669.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	3.97889244079077	3.68872799369691	3.78955211992515	3.65277453259982	3.62050206653228	4.01010561070199	3.5539303526823	3.93217086875763	0.0359233518336131	0.939850068216086	0.978335278456146
Merged-chr1-161139690-4	chr1	161139578	161139778	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3034.0	NM_028664	73844.0	Mm.38830	NM_028664	ENSMUSG00000044835	Ankrd45	4933409K03Rik	ankyrin repeat domain 45	protein-coding	5.21330441079847	4.80583507352569	4.82116670531214	5.03397300873273	6.06758585426409	5.76912882489841	5.8359123254329	5.73372010600535	1.53321138044908	1.28047887433192e-07	5.37400977571178e-06
Merged-chr14-51084013-4	chr14	51083928	51084128	+	942.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7049.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	5.13886657718389	4.84837200549851	4.66001331744642	4.83101941650626	5.0094688051851	4.91489214725071	4.71850321811566	4.43086565158248	-0.167403709460859	0.641365488012283	0.848684971999741
Merged-chr16-55686641-4	chr16	55686535	55686735	+	930.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135503.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	4.63370784912572	4.57774258605048	3.89636667337947	4.33637413380489	4.43367350707837	4.49047051469128	4.2980013842126	4.31446070117034	-0.00731260169874112	0.985895206175247	0.994788540667462
Merged-chr4-54527863-3	chr4	54527748	54527948	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-420097.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	7.40458252465625	7.54986550467302	7.92858716175918	7.99618789908662	4.35516395707648	5.15615398104998	4.75955436904166	5.04085818153257	-4.94659790434337	1.96883536253798e-47	1.40139732270091e-43
Merged-chr9-120491679-4	chr9	120491590	120491790	+	872.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026892)	promoter-TSS (NM_026892)	-916.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	3.6145716339902	4.06252749948106	3.61500276827117	3.97840573406644	4.09832933001492	4.11661135776037	4.10848540560251	3.89404554823615	0.57295070727715	0.212892390289771	0.517890206713451
Merged-chr7-16452824-4	chr7	16452748	16452948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026938)	promoter-TSS (NM_026938)	69.0	NM_026938	69094.0	Mm.29633	NM_026938	ENSMUSG00000019158	Tmem160	1810008O21Rik	transmembrane protein 160	protein-coding	7.79860457328664	7.65724708717126	7.76937234947906	8.03163354574141	7.51409181248988	7.3437741267827	7.89056774671426	7.54507849408739	-0.313549702326525	0.109188983528133	0.364898007350064
Merged-chr8-83573252-4	chr8	83573114	83573314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134118, intron 5 of 12)	intron (NM_134118, intron 5 of 12)	6456.0	NM_025843	66916.0	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	4.79924929400401	4.85193318719053	4.93602443019836	4.92474356255955	4.46083765436924	4.23367706141472	4.84622119378462	4.72301542805683	-0.62807027286863	0.0824483021388812	0.311757029950663
Merged-chr4-46451962-4	chr4	46451849	46452049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130889, intron 1 of 6)	CpG	1023.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	5.35994666493263	5.11510671331415	5.83284155158343	5.61744559113302	5.46805629794381	5.98339095571717	5.66522559146467	5.64039321368892	0.309376520688354	0.311725048994054	0.623665218229603
Merged-chr13-92354057-4	chr13	92353969	92354169	+	827.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010049)	promoter-TSS (NM_010049)	-714.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	4.24086767182608	3.79920459134375	4.32691273991707	4.02535057168295	4.19737364048777	4.49726459603221	3.81565860638597	4.51493756405063	0.436220635236738	0.335117494784364	0.645470341043074
Merged-chr9-38741588-4	chr9	38741494	38741694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145957, intron 18 of 18)	intron (NM_001145957, intron 18 of 18)	-11202.0	NM_146787	258783.0	Mm.131149	NM_146787	ENSMUSG00000061039	Olfr920	MOR165-6	olfactory receptor 920	protein-coding	5.8430357627204	5.56901580851727	5.98143529342362	6.27892058436796	5.90107925613593	5.72568696234612	6.2384742084608	6.06100139436781	0.0535539368588873	0.850954546093738	0.943782817108763
Merged-chr4-56262226-4	chr4	56262135	56262335	+	763.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	479190.0	NM_025271	11471.0	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Gm26657|Tact1	actin-like 7b	protein-coding	3.49886006213314	3.95889280536021	3.76260649990052	4.29175275552459	4.22155351223876	4.25323677383033	4.35367817132573	4.21279099837457	0.840335530696453	0.0897592293956632	0.327189946514957
Merged-chr6-142747395-4	chr6	142747297	142747497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9289.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	7.00670026847965	6.45991841604407	6.91894570125609	7.05709971716473	7.05462976145553	6.83419601253324	6.81649380368506	7.36267564828222	0.211229940802248	0.370707126228737	0.67489992935098
Merged-chr5-108434428-4	chr5	108434265	108434465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007507)	promoter-TSS (NM_007507)	34.0	NR_154996	11958.0	Mm.136093	NM_007507	ENSMUSG00000050856	Atp5k	2610008D24Rik|Atp5i|Lfm1	ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E	protein-coding	6.62565345811667	6.67196463198202	6.5494378634425	6.79688926851606	6.28063518599438	6.35934341860897	6.3460663282159	6.35571709744081	-0.502206242284748	0.0172238932530312	0.115652881838533
Merged-chr11-76494666-4	chr11	76494567	76494767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346670)	promoter-TSS (NM_001346670)	-172.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	5.7369227724354	5.61294543415968	5.69021129117944	5.6329772026575	5.49256746795044	5.6822067276055	5.47973945673332	5.28994376668435	-0.296863658892491	0.267872120865511	0.579713969205978
Merged-chr15-77846459-4	chr15	77846363	77846563	+	926.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-4288.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	4.55093361149259	4.4843570476499	4.03255520766229	4.16474632069884	4.49730013759237	5.05837334040948	3.89762739777837	4.62412240284358	0.579669003764627	0.212099696420878	0.516916493972183
Merged-chr11-46052475-2	chr11	46052375	46052575	+	794.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-2027.0	NM_001291890	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	2.55143859572903	2.54764442017806	2.47804577343723	2.70719347797662	2.74060100906003	2.79400957404803	3.01282787709388	2.74961225484003	1.16544878934172	0.0831796487658928	0.313394252567621
Merged-chr19-46670874-2	chr19	46670774	46670974	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007809, intron 2 of 7)	intron (NM_007809, intron 2 of 7)	2126.0	NM_007809	13074.0	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	3.33389936636987	3.16047849093875	3.33437257553526	2.91822919783128	3.30944118601372	3.33493352543435	3.08839107607163	3.27754447403374	0.27017019571072	0.633406759559221	0.844651176689519
Merged-chr17-44351556-4	chr17	44351455	44351655	+	929.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	162983.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	4.80142500854713	4.47990576675536	5.38932640026642	5.48229959435906	4.69222889787724	4.7707942272636	4.9263936392137	4.94709603203316	-0.546401028808166	0.166625960869423	0.457960964592688
Merged-chr13-40922510-4	chr13	40922409	40922609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	4875.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	5.35276851743572	5.4937548594996	5.85563022793434	5.91828485180697	5.44734900781408	5.46660877620506	5.75897841525176	5.82948272902712	-0.0974160423738569	0.741312433290027	0.898139463026673
Merged-chr4-144891423-4	chr4	144891322	144891522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-1405.0	NM_001172424	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	6.27071724631788	5.8677458736979	6.3573802786707	6.53617719242789	5.77247039338512	5.70170225420434	5.85009564916094	5.99122052762853	-0.718989641896303	0.0066643750914264	0.0586793115577239
Merged-chr16-45628640-4	chr16	45628549	45628749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145389, intron 5 of 5)	MTE2a|LTR|ERVL-MaLR	18209.0	NM_001159297	14525.0	Mm.4799	NM_008099	ENSMUSG00000022659	Gcsam	Gcet|Gcet2|M17|M17-L	germinal center associated, signaling and motility	protein-coding	5.77436709257523	5.85811823357462	5.45575815562365	5.69550556584955	6.32570573298626	6.22726852574119	6.50873317973685	5.89385410510292	0.870105596264811	0.000874997112437462	0.0120968929881013
Merged-chr11-66906045-2	chr11	66905945	66906145	+	872.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033539, intron 3 of 3)	intron (NR_033539, intron 3 of 3)	-5946.0	NM_178656	193003.0	Mm.440256	NM_178656	ENSMUSG00000048070	Pirt	A530088H08Rik	phosphoinositide-interacting regulator of transient receptor potential channels	protein-coding	3.17633896143919	3.28357352633745	3.17677273013263	3.00388320697211	2.96081511441881	2.81813527892643	2.98699494759189	3.28205424303342	-0.555603711404651	0.355930033415106	0.662610987347058
Merged-chr9-89674355-3	chr9	89674233	89674433	+	838.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30710.0	NM_025360	66111.0	Mm.27606	NM_025360	ENSMUSG00000032353	Tmed3	1200002G13Rik|AW546672|P24b	transmembrane p24 trafficking protein 3	protein-coding	3.47577770434531	3.62756137286873	3.47622297324824	3.66393832318323	3.39171335356446	3.46911127350544	3.62333027214756	3.77977580459185	-0.00372708424693365	0.994021254841672	0.997739983081298
Merged-chr16-77128865-4	chr16	77128772	77128972	+	965.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114803.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	4.49861539652259	4.34760110873513	4.69305906310088	4.74753779155271	4.83386508687337	4.12121338206247	4.70567838139716	4.31743448101058	-0.106789430765576	0.794476781183417	0.920564651199299
Merged-chr10-76344954-3	chr10	76344844	76345044	+	980.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081419, intron 1 of 37)	CpG	347.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	4.24300774078677	4.215635961594	4.36780780989376	4.09675149375681	4.22200641991135	4.18080752302635	4.18094466000484	3.950098100276	-0.210040891197657	0.604011505894316	0.828350269166784
Merged-chr5-74253929-4	chr5	74253872	74254072	+	831.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	58646.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	3.44967049278696	3.39433613179878	3.97416860201171	3.45618520457461	3.68891699385723	3.75013823249799	3.82098395496727	4.09416872160512	0.787383079299946	0.116411411744459	0.377476808870985
Merged-chr3-144207730-3	chr3	144207632	144207832	+	868.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2477.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	3.95383939095203	3.70803932365034	3.2635687929757	3.62691128009415	3.60936793288063	3.63381078553373	3.66522994091801	3.51573317036544	-0.162155558685047	0.750851659066838	0.901886131063948
Merged-chr8-82356621-2	chr8	82356535	82356735	+	701.125	f0_balb.idr|f1_balb.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	45951.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	3.45024386059155	3.16801205342304	3.49866982863581	3.74671178901592	2.61160501108512	3.09906652479754	2.75481334096431	2.98500635569809	-2.84518168846527	0.000153165391252094	0.00290028182599968
Merged-chr2-150783014-3	chr2	150782908	150783108	+	888.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-3788.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	4.24726733911542	4.31999080149288	4.24793200628816	3.73914106446168	4.18030406711812	4.077358196735	4.53587450631225	4.15426278724339	0.260303993483169	0.555805458893052	0.801705036623952
Merged-chr10-14178936-1	chr10	14178836	14179036	+	910.0	f0_balb.idr	Intergenic	Intergenic	212557.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	3.77109637629112	3.39211882707633	3.93891951721759	3.86148850740992	3.1077541115428	3.26616442750598	3.07029969486884	3.41035389623112	-1.95451727271668	0.000765244459116228	0.0108634494127311
Merged-chr15-55557692-1	chr15	55557592	55557792	+	1000.0	f0_balb.idr	promoter-TSS (NM_026759)	promoter-TSS (NM_026759)	284.0	NM_001168250	105837.0	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	4.42559314333978	4.76927436034831	5.24740659940915	4.83613139087268	4.7830358624276	4.55799273040727	4.62494187455388	4.51600959078	-0.460583898750653	0.223526226761331	0.531602771975184
Merged-chr17-66514541-4	chr17	66514412	66514612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024448, intron 1 of 5)	intron (NM_024448, intron 1 of 5)	5158.0	NM_024448	19328.0	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	5.29651967104226	5.50792294044272	4.83792325278173	4.99684805055973	5.35853138464325	5.31487268877154	5.38374537712962	5.2637155101766	0.278081854009411	0.37813749594563	0.680731652897493
Merged-chr4-109123353-4	chr4	109123248	109123448	+	997.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	RLTR19-int|LTR|ERVK	-5312.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	5.26288230783375	4.84951844868921	5.10608385048736	4.95102728812059	5.40417995973961	5.06515155417878	5.56696211554332	5.19944087468147	0.541623274198195	0.08409264438111	0.315348524018915
Merged-chr3-96905260-4	chr3	96905110	96905310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026229)	promoter-TSS (NM_026229)	88.0	NM_026229	67549.0	Mm.46722	NM_026229	ENSMUSG00000028096	Gpr89	4933412D19Rik|Gpr89a|SH120	G protein-coupled receptor 89	protein-coding	5.16089439974468	5.22256186397222	5.47916611486563	4.96232882070166	5.16197831907088	5.16401614477598	5.10353850797606	5.5251890806842	0.0807900988033237	0.79854524801729	0.922092927040374
Merged-chr8-72296753-2	chr8	72296643	72296843	+	902.5	f0_balb.idr|f1_balb.idr	Intergenic	PB1D9|SINE|Alu	-22319.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	3.54084395923885	3.76828111061602	3.80104897028939	3.89154546371512	3.48271864997289	3.65735322425462	3.34581029876198	3.75093136234286	-0.626362497914626	0.207512233399022	0.511496333628133
Merged-chr13-41619715-3	chr13	41619609	41619809	+	758.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163572, intron 1 of 2)	intron (NM_001163572, intron 1 of 2)	13493.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	3.33046739149859	3.00619154183679	3.16700882499248	3.14552286650878	3.00521898493502	3.15458938114782	3.09634502207562	3.27674939284971	-0.123005138983314	0.826927052013221	0.933592020200304
Merged-chr8-128605791-4	chr8	128605617	128605817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-79937.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	6.2754890950172	6.25545984045197	6.05832799816653	6.79654598162867	5.73172878280086	5.74498430359419	6.33180088336768	6.03215901154614	-0.63396629830487	0.0281457691352321	0.160605074657422
Merged-chr2-102887659-4	chr2	102887564	102887764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	14001.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	5.24310897572263	5.15162172364063	5.51531600038472	5.33353043706642	5.58969326046597	5.24586631935367	6.0941699675738	5.59028725328946	0.60526361380867	0.0507191891009852	0.233499848717355
Merged-chr2-174335877-4	chr2	174335788	174335988	+	845.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077507, intron 2 of 10)	intron (NM_001077507, intron 2 of 10)	5799.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	4.19872350503836	4.27970180883424	4.50844187622027	4.55727536833836	4.55042826089544	4.42309205189957	4.23020151856765	4.54407619937007	0.095306437685566	0.804868652154969	0.925078769566449
Merged-chr2-30214958-4	chr2	30214862	30215062	+	892.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9115.0	NM_172404	70266.0	Mm.216089	NM_172404	ENSMUSG00000039648	Kyat1	2010009K05Rik|AI182306|Ccbl1|Gtk|Kat1|KatI	kynurenine aminotransferase 1	protein-coding	5.04323390710598	5.63495199384841	4.85354454487705	4.10237339501592	4.49406205004571	4.49467220488381	4.2372011059037	4.08225149912219	-1.44956369258521	0.00294715112182849	0.0315404104195805
Merged-chr18-20809841-4	chr18	20809727	20809927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	-63423.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	7.44660210117597	7.54734851895266	7.83339462019858	7.52662828866685	7.33613654680342	7.12553935194653	7.24748549001113	7.7404404398251	-0.278675525931737	0.179303935059125	0.475558645945455
Merged-chr1-33814528-4	chr1	33814485	33814685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359275)	promoter-TSS (NM_001359275)	10.0	NM_133817	98403.0	Mm.289103	NM_133817	ENSMUSG00000042197	Zfp451	4930515K21Rik|4933435G09Rik|AI596398|COASTER|Kiaa0576-hp|Znf451|mKIAA1702	zinc finger protein 451	protein-coding	6.80382112793077	6.76951761291741	6.73024272368207	7.09845973948096	6.99927567874316	7.14474728522612	7.24582555862538	7.00092261164688	0.308945502237522	0.133353643969692	0.406663040937973
Merged-chr7-45305510-4	chr7	45305425	45305625	+	806.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175130, intron 20 of 24)	intron (NM_175130, intron 20 of 24)	-19433.0	NR_110499	100040970.0	Mm.289810	NR_110499	ENSMUSG00000046721	Rpl14-ps1	Gm9811	ribosomal protein L14, pseudogene 1	pseudo	3.66993841117765	3.87685219697798	3.72466262469	3.56176129503881	3.66869196385232	3.94750681606886	3.70964423393905	3.9188385037513	0.314757994146714	0.495803557597175	0.76597576511643
Merged-chr12-40626694-4	chr12	40626591	40626791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 4 of 52)	intron (NM_172803, intron 4 of 52)	180638.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	7.46711948156289	7.61443625028711	7.90417086240109	7.86525848653788	7.54419710034994	7.56624048090458	7.31029718426483	7.47285234071062	-0.333009138750748	0.0769655803114793	0.299942664677925
Merged-chr5-105595725-4	chr5	105595630	105595830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	76259.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	6.30371507419677	6.07010430539124	6.21464352229033	6.00799953953381	6.17863443776676	5.78129219574685	6.02436644168124	6.11306668591343	-0.156356184761982	0.522074718480057	0.781821472022301
Merged-chr11-46269136-4	chr11	46269013	46269213	+	855.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 11 of 30)	intron (NM_001252459, intron 11 of 30)	33556.0	NM_177075	320116.0	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	3.99084555171585	4.20082625264803	3.93886566209334	4.09819497093596	4.38697405891546	4.21490888160771	4.16571872564652	4.26787248847934	0.508601896028619	0.20456479774391	0.507837532736251
Merged-chr6-84661261-1	chr6	84661161	84661361	+	842.0	f0_balb.idr	intron (NM_177077, intron 20 of 21)	L1MD3|LINE|L1	-67353.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	3.47824249725996	3.85903933415993	3.47870675141615	3.6489978896096	3.46511261794343	3.28009694573282	3.46528015506079	3.23568487483153	-0.87684198089005	0.0969696777459513	0.341152514478586
Merged-chr12-17000120-4	chr12	17000006	17000206	+	972.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172574)	promoter-TSS (NM_172574)	12.0	NM_172574	217430.0	Mm.379451	NM_172574	ENSMUSG00000045679	Pqlc3	C78076|E030024M05Rik	PQ loop repeat containing	protein-coding	5.93252063109167	6.14478484754249	5.87128164578998	6.08100914642566	5.21500614955188	5.08619668803428	5.11906299198678	5.10262678314776	-1.5197926051133	4.20658383969491e-08	1.96599101198716e-06
Merged-chr18-70531031-4	chr18	70530946	70531146	+	996.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136090)	promoter-TSS (NM_001136090)	-725.0	NM_001289515	26447.0	Mm.244352	NM_011972	ENSMUSG00000038425	Poli	Rad30b	polymerase (DNA directed), iota	protein-coding	4.84766656466558	5.01489477241909	4.8880236566951	4.84151405013526	5.67736026273071	5.10356143649103	5.11025949313699	5.33895842657435	0.841633494997497	0.00870965232022851	0.071438619785843
Merged-chr11-107470285-2	chr11	107470185	107470385	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153311, exon 1 of 10)	non-coding (NR_153311, exon 1 of 10)	435.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	4.38949596347768	4.35537104760507	4.55356065688684	4.10802284599148	4.37543251101039	4.47516386663456	4.4127697446871	4.69497627585997	0.343981664996383	0.371563550055788	0.675614006266856
Merged-chr17-35208426-4	chr17	35208318	35208518	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3067.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	4.99222402965508	5.06541421653848	5.24644258559614	5.22898454739233	5.52760510400723	5.60529366346166	5.45808008686397	6.11109322245904	0.967528234617277	0.00161575887879884	0.0198119037440176
Merged-chr2-30084320-4	chr2	30084214	30084414	+	916.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153805, intron 9 of 21)	MTD|LTR|ERVL-MaLR	5616.0	NM_153805	263803.0	Mm.233843	NM_153805	ENSMUSG00000026785	Pkn3	AW209115|BC034126	protein kinase N3	protein-coding	4.51028920536633	3.89380239499241	4.24903216958743	4.5924949472329	4.47646623714069	4.60153763927748	4.40926618664228	4.58455920464857	0.379366381781504	0.35897409073699	0.664916644232545
Merged-chr2-166980335-4	chr2	166980262	166980462	+	990.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	URR1B|DNA|hAT-Charlie	-15645.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	5.4737336291352	4.93069124432718	5.13247376629485	5.36408291161711	5.26834551599877	5.20559897893948	4.89584858997801	5.02678205558781	-0.248457761886848	0.440830468419189	0.728164773822774
Merged-chr17-81708701-2	chr17	81708601	81708801	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	29686.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	2.8142246716834	2.80305664150467	3.0695565224589	3.35951249475047	2.95090997236746	3.05585675006597	3.05809473243899	3.06795339322162	-0.0566250763705517	0.929118156859535	0.974317157505369
Merged-chr13-100854358-4	chr13	100854214	100854414	+	859.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20887.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	3.98692071222079	3.82490093350061	4.07529659408004	3.78818820336835	3.60742661540211	3.85700166485861	3.82736374837843	3.89089462789959	-0.351870141183987	0.438033143974224	0.726196986801756
Merged-chr7-82881566-3	chr7	82881475	82881675	+	778.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14242.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	2.93235881808253	2.69678522471151	2.76708233945667	2.29764486089721	3.95438610896224	3.52545182630085	3.59183438844878	3.94655042155553	5.82680846145899	8.46301914337072e-06	0.000237067784181812
Merged-chr2-122409166-4	chr2	122409064	122409264	+	970.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31656.0	NM_172980	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	4.40604370364566	4.70807489385456	4.54752266552067	5.06553083820809	4.79015406508316	5.13249939822183	4.73065544714125	4.78733945982597	0.277208180673048	0.464970881847994	0.745711378465558
Merged-chr15-80671611-3	chr15	80671520	80671720	+	939.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145986)	promoter-TSS (NM_145986)	-227.0	NM_145986	213956.0	Mm.132439	NM_145986	ENSMUSG00000022408	Fam83f	AW544981	family with sequence similarity 83, member F	protein-coding	3.97385128892625	4.15077589638824	4.1682645429687	4.53107476798163	3.92184404748511	4.09708289944671	4.1499411194065	4.0725632582551	-0.474068029334541	0.274052750037128	0.585795104252258
Merged-chr3-51185624-4	chr3	51185533	51185733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38814.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	6.67420712543912	6.13070650270997	6.37926444580086	6.88816269616998	7.06774691925597	6.77319865404541	7.2902217196743	7.15418209469118	0.730475525027737	0.00363975453318687	0.037180552226996
Merged-chr14-48457444-4	chr14	48457345	48457545	+	876.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310584, intron 4 of 16)	intron (NM_001310584, intron 4 of 16)	11093.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	4.80018241142222	4.4140692627788	4.60817973662495	5.02310981935894	4.69371119376537	4.6084789809217	4.778043579272	4.86726859855917	-0.0217974261905155	0.952653668058232	0.983236938138431
Merged-chr1-105093989-2	chr1	105093889	105094089	+	853.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-262018.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	3.39935390698961	3.28944619434636	3.33818049838408	3.77028599010978	3.63406028922381	3.51353996256109	3.74748583142482	3.61853527319026	0.471060284207454	0.374009715486748	0.677397508129094
Merged-chr19-7268919-4	chr19	7268828	7269028	+	950.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_054048, exon 2 of 13)	5' UTR (NM_054048, exon 2 of 13)	649.0	NM_001320554	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	4.90207453464242	4.55768458777684	4.46405104139241	4.11755830749537	4.39564359642268	4.59591922393205	4.64335753440865	4.69927580026213	0.131788034134202	0.74250513417769	0.898494026733066
Merged-chr13-113615159-4	chr13	113615035	113615235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	3429.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	6.65351698027654	6.88473316545314	7.05103937187979	6.62052647586281	7.30716690263729	7.26384567351203	7.5874439382441	6.99654426916895	0.68957780067728	0.00158614923087563	0.0195397224133777
Merged-chr13-99187073-4	chr13	99187006	99187206	+	912.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	2283.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	3.64694220104836	3.61851184899009	3.85991793581007	4.20037579709041	3.69893293561151	3.76586604614872	3.51468591610815	4.16046119339136	-0.173180068726307	0.738150155887406	0.896665270093572
Merged-chr15-64060555-5	chr15	64060487	64060687	+	986.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144846)	promoter-TSS (NM_144846)	-139.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.65782040071923	4.55596342089986	4.45267721155633	4.27598648471707	4.65119431037686	5.0613615340665	4.84414331886527	4.31103732091896	0.575912937960702	0.136073662098146	0.410490184889333
Merged-chr17-15724112-3	chr17	15724084	15724284	+	690.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007690, intron 2 of 35)	B2_Mm1t|SINE|B2	19217.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	1.905563161272	1.87084673699658	1.99010802973308	1.7000456397882	2.43338118199714	2.52303058700549	2.27567003121445	2.34850441748375	5.62823414547777	1.25180270443954e-07	5.26607947395404e-06
Merged-chr11-40135215-3	chr11	40135106	40135306	+	972.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	557476.0	NM_134017	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	5.40001763778861	5.3341931513118	5.30409292000633	5.58493971557528	3.81648586669426	4.04760730436041	3.96415263434832	3.97783699196323	-3.60839086580046	5.71747991206039e-16	1.0910576478835e-13
Merged-chr12-40257442-4	chr12	40257336	40257536	+	826.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34072.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	4.41216418692914	3.70138784904872	4.13737873528733	3.80203669963362	4.14731594381373	3.8471495329694	3.98081220198447	4.09001186870137	-0.018931084907424	0.967745351371352	0.98857340124644
Merged-chr8-126566160-4	chr8	126566066	126566266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27270.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	7.8995958252711	7.91029841164671	7.77236703165031	7.85073564042665	7.30615620663948	7.31821887491345	7.1879713427749	7.15943268595429	-0.812308926235875	1.74516774095409e-06	5.79110930691707e-05
Merged-chr6-84017610-4	chr6	84017540	84017740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 1 of 54)	intron (NM_001077694, intron 1 of 54)	-1746.0	NM_001310152	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	6.11115860100003	5.98395592727888	6.02860451408053	6.36035887346677	5.95319473541376	5.77561823809885	6.36724807309614	6.00251555500828	-0.155638828650914	0.55051004283467	0.798659719890699
Merged-chr10-19522378-3	chr10	19522277	19522477	+	964.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27734.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	4.04047150804712	4.39453741511934	4.50439815717497	4.32267805121861	4.0421184385901	3.60420732954453	3.97302473752819	4.39102605440463	-0.740439693224289	0.111794122930683	0.369494973839994
Merged-chr1-44162597-3	chr1	44162499	44162699	+	929.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011729, intron 6 of 14)	intron (NM_011729, intron 6 of 14)	14855.0	NM_011729	22592.0	Mm.2213	NM_011729	ENSMUSG00000026048	Ercc5	Xpg	excision repair cross-complementing rodent repair deficiency, complementation group 5	protein-coding	3.95391885949338	3.61700576003537	3.80532256183373	4.4454876955385	4.083150458218	3.62802076402554	3.73691172277603	3.74946404626047	-0.529077876855136	0.311931520026107	0.623813898793094
Merged-chr4-101182802-4	chr4	101182685	101182885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 5 of 24)	(A)n|Simple_repeat|Simple_repeat	82497.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	6.26589770650106	5.9160709916313	6.5432036121948	6.37661897827778	5.90558251530134	5.7666069849667	6.06040529651233	6.18761402691153	-0.474214161550327	0.0673732731497271	0.276975985302323
Merged-chr12-69372025-4	chr12	69371896	69372096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007481)	promoter-TSS (NM_007481)	-154.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	7.3975966524111	7.36711590497709	7.19130533667623	7.24339224912479	7.62200828552759	7.91739606899781	7.76952859714119	7.60611879480274	0.571459188696639	0.00135614541285111	0.0172311807106978
Merged-chr4-56055275-4	chr4	56055175	56055375	+	954.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-522800.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	5.1408653262364	4.71762513025637	5.14173732526456	5.27442929489933	5.43844694911648	4.86746527297033	5.23735674991932	5.10585562540762	0.180765932657455	0.591383390433663	0.821588335077149
Merged-chr11-94212133-3	chr11	94211997	94212197	+	981.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009427, intron 1 of 1)	intron (NM_009427, intron 1 of 1)	643.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	4.8769983007404	4.59579648794746	4.62190358035944	4.47164051439584	4.52807991566708	4.75526928245373	4.71543996475747	4.84100225706124	0.154348677359293	0.662591459741176	0.860115279097678
Merged-chr5-135106849-4	chr5	135106750	135106950	+	963.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152880)	promoter-TSS (NR_152880)	-41.0	NR_152881	58805.0	Mm.34213	NM_021455	ENSMUSG00000005373	Mlxipl	ChREBP|Mlx|WS-bHLH|Wbscr14|bHLHd14	MLX interacting protein-like	protein-coding	4.97572656001553	5.04549128004364	4.69931422330189	4.97836221767619	5.44631453993006	4.83567147398893	5.14869172046419	5.31453997584158	0.533663079955676	0.103875836144316	0.354209932974813
Merged-chr3-129878571-4	chr3	129878459	129878659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023196)	promoter-TSS (NM_023196)	-47.0	NR_104611	66350.0	Mm.151951	NM_023196	ENSMUSG00000027999	Pla2g12a	2310004B05Rik|GXII|GXII-1|GXII-1-PLA2|Pla2g12|Rossy|mGXII-1	phospholipase A2, group XIIA	protein-coding	6.44466648845649	6.59570513512768	6.25732500791053	6.48853871433054	6.58609903233275	6.830341969759	6.66455687584859	6.44119947882277	0.256919203150141	0.23850670266622	0.548910355390594
Merged-chr9-38815727-3	chr9	38815594	38815794	+	583.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146781, exon 1 of 1)	exon (NM_146781, exon 1 of 1)	286.0	NM_146781	258777.0	Mm.223208	NM_146781	ENSMUSG00000043911	Olfr922	MOR161-3	olfactory receptor 922	protein-coding	3.38314470646283	3.11166711441043	3.2211828492313	3.24436014604529	3.3069839357757	3.00208776943395	3.15101085526922	3.32988468483765	-0.124683823262741	0.822476432882018	0.932143478460956
Merged-chr2-80617165-4	chr2	80617035	80617235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024438)	promoter-TSS (NM_024438)	-79.0	NM_024438	68082.0	Mm.306818	NM_024438	ENSMUSG00000027001	Dusp19	5930436K22Rik|C79103|SKRP1|TS-DSP1	dual specificity phosphatase 19	protein-coding	5.47694225023086	5.49337806875584	5.36476152283466	5.54829708548459	5.0255759002744	5.28131766131666	5.64853168840593	5.2691268272357	-0.286948905199482	0.337896809158971	0.647707372291549
Merged-chr15-67116871-4	chr15	67116739	67116939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 3 of 8)	intron (NM_009177, intron 3 of 8)	60043.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	7.95635638039461	8.35840517513651	8.14907534565905	7.80111651835746	7.73826679143634	7.94186201389445	7.9125196095032	7.35400178894778	-0.419001631875748	0.0456754130542278	0.2190788561851
Merged-chr9-35115980-3	chr9	35115891	35116091	+	865.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029475)	promoter-TSS (NR_029475)	-737.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	3.21887690670711	3.32533783831824	3.40033071611283	3.24346125112953	3.1631705984506	3.67751997750639	3.68330900988817	3.34091088865374	0.631401558162718	0.241034966874084	0.551619163882296
Merged-chr19-15984989-4	chr19	15984875	15985075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045355)	promoter-TSS (NR_045355)	14.0	NM_198019	208518.0	Mm.105652	NM_198019	ENSMUSG00000041491	Cep78	5730599I05Rik|D030027P05	centrosomal protein 78	protein-coding	7.13802196903306	6.8372643833052	6.83533655629558	7.05357306996448	6.80399903619367	6.63074050776412	6.73016398104929	6.68479720034055	-0.362566346083751	0.072192084315719	0.288731829494216
Merged-chr12-8522946-5	chr12	8522871	8523071	+	809.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	16595.0	NM_001038660	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	3.80374928781308	3.65827325109993	3.99427738326122	3.6419880825053	3.57091084512824	3.81729568004075	4.06039614330095	3.85220389340892	0.169897540287796	0.718512230237468	0.887579709565285
Merged-chr9-78521099-4	chr9	78521040	78521240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39416.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	5.4592856912199	5.25560740523411	5.06106951587449	5.5263925164207	5.47965688297142	5.08667890416846	5.23480792262459	5.25702122220555	-0.123493509501754	0.687876063650481	0.872545186536627
Merged-chr18-35745930-4	chr18	35745853	35746053	+	847.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5399.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	3.99940312395532	3.96737851109943	3.78932796122753	3.93565593666876	4.14758922293942	4.02057115249947	3.98304713186964	4.29858829345731	0.514504402488017	0.219155863143671	0.526629593285283
Merged-chr3-84622209-2	chr3	84622109	84622309	+	798.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28635.0	NM_207278	403175.0	Mm.83086	NM_207278	ENSMUSG00000047819	Tigd4	C130063O11Rik|Gm418	tigger transposable element derived 4	protein-coding	3.07026533879653	3.11925289448449	3.0706356589976	3.27667843535766	3.10413073361405	2.98222130729981	2.93554854428676	3.23760009200462	-0.294316808379845	0.610931069282749	0.832066560416303
Merged-chr9-118856832-4	chr9	118856736	118856936	+	904.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-69700.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	4.38451824055718	4.77805559013438	5.23301481304065	5.26596708904319	4.84314669415469	4.35716403896413	4.46155160656261	4.56830738420201	-0.814752947012442	0.0484829443647075	0.227291542971449
Merged-chr8-125528129-4	chr8	125528023	125528223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	-35290.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	6.25111878767513	6.34831261329372	5.7931813469506	6.16398319449329	5.89978967772338	5.63051907180674	5.88298670345233	5.59976691201449	-0.619545527786449	0.0189180242559573	0.123245286831716
Merged-chr5-64885233-4	chr5	64885149	64885349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47450.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	5.88877857291428	6.08715223200303	6.2025969380894	6.15452897823694	5.72359240431462	5.9169619187764	5.92852731365435	6.14157271634135	-0.261655172424322	0.291614232338453	0.603957444239371
Merged-chr14-15066563-4	chr14	15066491	15066691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	245776.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	6.52498034688706	6.83885890328556	7.7356108390159	7.5889031142701	7.2894149146152	6.88061051439993	6.99539835211575	7.3468774297023	-0.17457363712423	0.550973515721174	0.798797129613765
Merged-chr19-8712130-4	chr19	8712025	8712225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 3 of 9)	intron (NM_001161413, intron 3 of 9)	1772.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	5.96267002657927	6.10067295121752	5.61003960918206	5.90386671320578	6.04504984058819	6.20260036616694	5.79442183867495	6.06506407182775	0.195746441208677	0.442848145354887	0.729596522039985
Merged-chr12-99608918-2	chr12	99608818	99609018	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_136760, intron 2 of 3)	intron (NR_136760, intron 2 of 3)	19056.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	3.0673587279521	3.02057446336212	3.06772878074851	3.15006446614595	3.24482240259617	2.97926556576326	3.17039565603164	3.06623218043495	0.170738289061334	0.762239720734737	0.906842184930015
Merged-chr9-85325678-4	chr9	85325592	85325792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160379, intron 2 of 2)	intron (NM_001160379, intron 2 of 2)	1432.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	5.39017726558551	5.1142068045185	5.19958118592128	5.39332187829976	5.29929118552207	5.78133959350144	5.60458517974043	5.78965385971708	0.583550710539135	0.0480803919537577	0.226231727919412
Merged-chr10-115250564-4	chr10	115250461	115250661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025706, intron 1 of 16)	intron (NM_025706, intron 1 of 16)	932.0	NM_025706	66687.0	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	6.17559997688475	6.08852060943165	5.86775563017481	6.38975997131011	5.88707497291213	6.09407430784486	6.23880307278019	6.37082356849791	-0.0112487069821778	0.965289816450254	0.987728412712582
Merged-chr13-20157778-4	chr13	20157664	20157864	+	870.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	67257.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	4.59628578935196	4.06795692349057	4.63090368537955	4.31502294524264	4.03943817450661	3.80838048462302	4.177621561097	4.3691224133816	-0.743263769714955	0.0913340040142411	0.330254664553196
Merged-chr7-126676398-3	chr7	126676296	126676496	+	707.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133670)	promoter-TSS (NM_133670)	22.0	NM_133670	20887.0	Mm.368982	NM_133670	ENSMUSG00000030711	Sult1a1	AI266890|PST|ST1A1|ST1A4|Stp|Stp1|mSTp1	sulfotransferase family 1A, phenol-preferring, member 1	protein-coding	3.35373367573112	3.54878751091038	3.41054209785401	3.51042390661775	3.24769695385231	3.46714220204635	3.39737466202856	3.23200303113807	-0.450011830172489	0.38517747207297	0.686632454724183
Merged-chr10-81431916-4	chr10	81431818	81432018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4745.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	5.23212636566049	4.87722692152473	5.14041960330903	4.85714518446121	5.24678045055948	5.28156985600447	5.26469202883755	5.00202472171113	0.350724389319893	0.260739408391056	0.572566494411889
Merged-chr11-20251420-4	chr11	20251340	20251540	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-2016.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	4.75479217569375	4.88198071863149	4.66989036557783	4.96493818754674	5.40955127604408	5.28701431945283	5.12064838466709	4.90841971318122	0.703423395239796	0.0322528833255797	0.175756238112957
Merged-chr11-120349626-3	chr11	120349515	120349715	+	852.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038126, intron 1 of 1)	CpG	937.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	4.33418928305846	4.41284509926405	4.24099758629638	4.00515302859236	4.42969003928635	4.63592193285066	4.44330357616179	4.71913041184819	0.740320747594434	0.0541556078784521	0.242986763311923
Merged-chr16-32115371-4	chr16	32115256	32115456	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15554.0	NM_025892	66994.0	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	5.56597826343509	5.64315876204114	5.48661422683118	5.502996860896	5.03706150067296	5.76555780156649	5.37390099814949	5.36716593869091	-0.266397866125249	0.375109005862159	0.678186534190177
Merged-chr4-97839681-4	chr4	97839631	97839831	+	996.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	62105.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	4.27136507351269	4.5510338512013	4.86219533429254	4.69177222619286	4.41355366602892	4.24019850965749	4.67184630870404	4.57858875641908	-0.289242380699046	0.453536254282844	0.737576700868181
Merged-chr1-120074841-7	chr1	120074805	120075005	+	916.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1125.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	3.81950346732453	3.67793121324606	3.65082934352689	3.88067908188394	4.15925548591467	3.70751159151133	4.04244446833015	4.25985387144945	0.806141666248326	0.0775094571639966	0.301115907186776
Merged-chr10-82797048-3	chr10	82797005	82797205	+	872.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15018.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	3.72996284650714	4.00442561517336	4.00612069011761	4.12263420732606	3.5043096566532	3.49552545758382	3.30144473818839	3.37828871580842	-1.79379528516256	0.00051658888891713	0.00792292189705504
Merged-chr16-76372429-6	chr16	76372325	76372525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	CpG	624.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	6.00669774420124	6.51579468394726	6.75057664803316	6.26088960827457	6.0845719070858	6.40025747142002	6.5498452986061	6.02675117751694	-0.193837645626026	0.4703646198302	0.749078941154353
Merged-chr1-165651374-4	chr1	165651273	165651473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 5 of 5)	intron (NM_001038846, intron 5 of 5)	-16832.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	6.18308351407301	5.67621843741835	6.29210224955252	6.4605558779518	5.68374054121193	5.68593600757721	5.97180940803194	6.08216557373933	-0.518519971681802	0.0683129706943201	0.279130249199254
Merged-chr19-56744387-4	chr19	56744298	56744498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22026.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	6.14653134923868	6.15700250020315	6.49477590081196	6.70485046092303	6.11082070503243	6.12120603411531	6.49301311810122	6.47411512139049	-0.157066769808896	0.544393112334684	0.795184841840149
Merged-chr3-116437119-4	chr3	116437021	116437221	+	771.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER72|LTR|ERV1	-13089.0	NM_001173553	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	3.80977314784787	3.83299262425533	3.32617316742426	4.00423987467586	4.06050743147263	3.70707962135543	3.69039743016656	4.03873605315938	0.320465554168596	0.534655752265326	0.789286995820758
Merged-chr19-11497433-4	chr19	11497336	11497536	+	871.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164202, intron 1 of 4)	intron (NM_001164202, intron 1 of 4)	5398.0	NM_001164202	666926.0	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	4.52478034591701	4.41829210554551	4.0408111086436	3.76512478179671	4.34459119007298	4.05554834559614	4.0240020597166	4.78549069588896	0.29720328727905	0.534152890536485	0.789066961676578
Merged-chr2-154402165-3	chr2	154402065	154402265	+	923.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009228, intron 2 of 7)	B3|SINE|B2	5919.0	NM_009228	20648.0	Mm.1541	NM_009228	ENSMUSG00000027488	Snta1	AW228934|Snt1	syntrophin, acidic 1	protein-coding	3.71478115138885	3.33749322281947	3.33466937906557	3.76390972439911	3.46601322244062	3.44780977284732	3.49815067994134	3.71307404547199	-0.0957294065632409	0.854624860776082	0.945249640443465
Merged-chr9-32695975-4	chr9	32695856	32696056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011808)	promoter-TSS (NM_011808)	-86.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	8.04227099783254	8.01695926518425	8.11492849342948	8.30752824716649	8.11294958041581	8.10958154203689	8.24655753130574	8.06463979729093	0.00176412359700806	0.991392891365325	0.996745793587504
Merged-chr19-34511280-4	chr19	34511201	34511401	+	965.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	16173.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	5.54077127497892	5.15281606758107	5.21294047219409	5.22829195866843	4.76053548920183	4.71059392453363	4.99681621402561	4.9826853446502	-0.827982922362168	0.0102240878541609	0.080191774035407
Merged-chr18-5345019-6	chr18	5344899	5345099	+	999.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10192.0	NM_001360447	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	4.58128422806865	4.57501751083285	4.46246829740924	4.4756650250294	4.44478425981419	4.50495868546049	4.21690832636893	4.50069345983209	-0.228387936088504	0.532657563249484	0.788200754532765
Merged-chr18-61092625-3	chr18	61092512	61092712	+	772.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	-12960.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	3.10558679478374	3.21736739529864	3.03877116320521	2.93428207412831	3.19719406360494	3.56830760366974	3.15845032611041	3.63488393437399	1.22696628117012	0.0294720970844439	0.165297801463528
Merged-chr6-29524306-4	chr6	29524208	29524408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2317.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	7.93111720728167	8.08068335526474	8.56571822961043	8.2008272637965	8.12985282658267	7.9875777680369	8.2194167405994	7.91979038488025	-0.184913151495082	0.335116844163789	0.645470341043074
Merged-chr2-76070549-4	chr2	76070438	76070638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081033, intron 12 of 19)	intron (NM_001081033, intron 12 of 19)	-88571.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	5.64874407156667	5.45435344197172	5.36721508080569	5.78941424167103	5.57795720191944	5.30619687882197	5.96984015858797	5.67078589541131	0.108827963996305	0.71242936255287	0.884871428029492
Merged-chr7-96951526-4	chr7	96951442	96951642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153591)	promoter-TSS (NM_153591)	15.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	7.94310657242958	8.03058030588116	7.82775911421331	7.86209631027178	7.88153759288599	7.85949770508222	7.99982789910255	7.8300849139551	-0.029112541454028	0.85661820135979	0.946037380962407
Merged-chr19-5930388-4	chr19	5930291	5930491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5575.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	7.65731910437574	8.01633408715591	7.68349337701428	6.92886540451675	7.77629643885024	7.94051848601229	7.94955076766995	7.13142050273862	0.150752859112743	0.579628100847138	0.815450951857779
Merged-chr14-118098463-4	chr14	118098364	118098564	+	956.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	34301.0	NM_029578	76355.0	Mm.251537	NM_029578	ENSMUSG00000022130	Tgds	2610017J16Rik|2610025M23Rik|AI648925	TDP-glucose 4,6-dehydratase	protein-coding	4.63687566848497	4.66464550284726	4.59209549086408	4.77503734881768	5.05471717271008	5.02089083232596	5.56986894530655	5.23269476347184	1.08400659373762	0.00125508296995421	0.016145951693181
Merged-chr13-75797961-4	chr13	75797863	75798063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41922.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	8.29355530108552	8.29673340407188	8.36041287929807	8.49282839722228	8.24808661627054	8.34274616213666	8.42809382916691	7.89770472735347	-0.156216564475409	0.373421103901235	0.677052849217637
Merged-chr15-50779842-4	chr15	50779735	50779935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	109214.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	6.25182547057795	5.86892578893031	6.00200239948699	6.52163808624461	5.86757027835883	5.78299153655197	5.83685729452364	5.44508969814915	-0.717979204423317	0.0107386211857554	0.0831915887441097
Merged-chr8-11430966-4	chr8	11430876	11431076	+	985.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 29 of 47)	intron (NM_009932, intron 29 of 47)	-46953.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	5.3727661072767	5.65165297526137	5.71928317907639	5.25087253362534	4.98128691277749	5.0779647772153	5.19708465774334	5.01144684822332	-0.79896764567936	0.009983136608163	0.0788142946575459
Merged-chr7-99149250-4	chr7	99149132	99149332	+	957.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8088.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	4.84585587631807	4.2243142948933	4.49478474317689	4.42870601993706	5.04207620681584	4.62751662349887	4.92064491018377	4.84336570250349	0.776273939062444	0.0338422176151951	0.181458019407305
Merged-chr1-80676439-4	chr1	80676349	80676549	+	951.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	-11097.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	5.06238139359462	5.26323057213332	4.68421083348684	5.14083018335061	5.19241377941599	4.86342844560934	5.10198805768995	4.8843634707358	-0.0710985639687926	0.831033396685741	0.935217950704842
Merged-chr5-102055174-4	chr5	102055053	102055253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	MLTR11B|LTR|ERVK	14768.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	6.96195532771894	6.8274362163795	7.46674357238104	7.10660998595476	6.53976942013883	6.49639835127706	7.07073863851345	6.8388413509961	-0.496902357651975	0.0393902341097796	0.199868653671229
Merged-chr11-97362266-4	chr11	97362188	97362388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138657)	promoter-TSS (NM_138657)	-263.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	7.22620920503555	7.37141817464816	6.82179633132104	6.96084370790046	7.50474592155091	7.27935081817218	7.27476345268462	7.03595882664071	0.245358972648575	0.254943926742485	0.566463360749286
Merged-chr2-90625147-3	chr2	90625031	90625231	+	733.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44484.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.2494008814947	3.32648508193904	3.06127234416881	3.05073664628044	3.21531122613574	3.23863776162616	3.4001063409827	3.511360611751	0.639568973016906	0.238390247644812	0.548817073412948
Merged-chr7-100534393-4	chr7	100534307	100534507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2693.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	5.57964745226377	5.57027131522881	5.40806191746753	5.51735543058138	5.75980379362965	5.58489112854657	5.87983526950749	5.65484824759034	0.34831000487666	0.181625192652853	0.478261980238889
Merged-chr8-111923682-4	chr8	111923599	111923799	+	982.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033321, intron 2 of 6)	ORR1E|LTR|ERVL-MaLR	10114.0	NM_001357348	234740.0	Mm.87513	NM_001033321	ENSMUSG00000031951	Tmem231	4932417I16Rik|Gm178	transmembrane protein 231	protein-coding	4.94476519612341	4.76249975492382	5.18525887697948	5.34180340996324	5.02889199530163	5.19418120774029	5.24926730884151	5.4091727257255	0.237724233244229	0.471577341008153	0.749969916563203
Merged-chr6-83102182-5	chr6	83102149	83102349	+	915.2999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081266, exon 1 of 9)	exon (NM_001081266, exon 1 of 9)	733.0	NM_001081266	243510.0	Mm.436553	NM_001081266	ENSMUSG00000107499	Ccdc142	A230058J24Rik	coiled-coil domain containing 142	protein-coding	3.87535105211711	3.62965609890892	3.68400753833736	3.18266454955108	3.66665807274543	3.37601431921148	3.71863253063309	3.87347231626497	0.194821697021986	0.71697900319331	0.88685113334428
Merged-chr3-103790966-3	chr3	103790834	103791034	+	998.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301304, intron 1 of 15)	CpG	341.0	NM_001301306	15257.0	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	4.87226923970682	4.97289065306665	4.87307623086016	4.62026727401239	4.83120487923482	5.08035482096527	4.88468531817695	4.71825014769627	0.110082700168342	0.742929145214265	0.898691548174051
Merged-chr11-102424911-4	chr11	102424804	102425004	+	983.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5418.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	5.57384046473526	5.16483391519968	4.73599691606421	5.12639015154963	5.52751278346214	5.59147375493701	5.07841115528817	5.73196178702674	0.575755733057722	0.0882035453581671	0.323971317149955
Merged-chr8-85510946-4	chr8	85510832	85511032	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 5 of 11)	intron (NM_173866, intron 5 of 11)	18315.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	5.24723306503763	5.7258067181267	5.11721171326847	5.43724380934066	5.2276618273736	5.03140268780344	5.25271754855802	5.11374676136223	-0.449181625792754	0.148718694222225	0.430643502544393
Merged-chr2-84094983-1	chr2	84094883	84095083	+	724.0	f0_balb.idr	Intergenic	Intergenic	-153757.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	2.98125730319194	3.03248250233935	2.98161692385332	3.30779673649992	2.98968713709286	2.89207662139868	2.8471472421093	2.85444872073574	-0.835171541771241	0.175583984544018	0.47032648424841
Merged-chr4-56946822-4	chr4	56946717	56946917	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175518, intron 1 of 17)	CpG	612.0	NM_175518	242474.0	Mm.296632	NM_175518	ENSMUSG00000055296	Tmem245	A630051L19Rik|AI957324|D730040F13Rik	transmembrane protein 245	protein-coding	5.39821648114001	5.20138057804037	5.87708225876515	5.75676706432285	5.02736324238214	5.09364038313644	5.11740249106899	5.72569507074456	-0.56347473581333	0.0985167511290538	0.343994301133918
Merged-chr1-149961071-6	chr1	149960973	149961173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	217.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	5.34930508512048	5.15795858676209	5.73050835392822	5.20013733849248	5.44450757023074	5.33570342842151	5.35265533882289	5.2859142153762	-0.00955617901939188	0.974748469509495	0.990966385645806
Merged-chr7-112240941-1	chr7	112240841	112241041	+	978.6666869999999	f0_balb.idr	intron (NM_001193305, intron 2 of 25)	intron (NM_001193305, intron 2 of 25)	15105.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	4.01673242263106	4.22716923879997	4.3383711796456	4.62267732052215	3.26430440295826	3.43476369982819	3.37680764127825	3.31230008626988	-3.39568291360752	1.4234441037391e-08	7.3366638566289e-07
Merged-chr1-191122954-4	chr1	191122909	191123109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24595.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	6.71135346399276	6.56897989065611	6.78503756574699	6.70372185190489	6.68544645142897	6.88895854200373	6.90847789161988	6.87509551408091	0.202624552704764	0.309897635937368	0.622047371258887
Merged-chr2-6165988-4	chr2	6165908	6166108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27243.0	NR_040333	320132.0	Mm.445891	NR_040333	ENSMUSG00000087125	A230108P19Rik	-	RIKEN cDNA A230108P19 gene	ncRNA	5.84463952765426	5.93499674178549	5.79721345112015	6.15383173579345	5.75814638112649	5.70230351128955	5.61135037602321	6.34344228476536	-0.104870075713195	0.713872764623963	0.885517868757269
Merged-chr15-52953568-1	chr15	52953468	52953668	+	584.0	f0_c57.idr	Intergenic	Intergenic	241123.0	NM_027212	69790.0	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	3.37695121374784	3.31796180917034	3.18001722897193	3.70650139220563	3.3542802992872	3.72027121919949	3.93936942916285	3.4925737032017	0.698013899904467	0.216566452471109	0.523180271532754
Merged-chr11-69920925-2	chr11	69920825	69921025	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166594)	promoter-TSS (NM_001166594)	22.0	NM_001166594	276770.0	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	5.23451080071239	6.21011956524233	6.08555662551395	5.76350024470476	6.20897812978533	6.04384145828647	5.81360875559967	6.23182232986199	0.335783140036071	0.266885662434475	0.578496088873363
Merged-chr7-43423228-4	chr7	43423129	43423329	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6872.0	NM_177693	233187.0	Mm.267027	NM_177693	ENSMUSG00000093639	Lim2	19kDa|4833403J20|MP19|To3	lens intrinsic membrane protein 2	protein-coding	5.72367257105477	5.43306171054973	5.63242140164005	5.40505954105914	5.32259288960719	5.17177985511536	5.27979033087348	5.17193001400174	-0.533516301009829	0.0639943541238712	0.268748226610458
Merged-chr13-81072468-4	chr13	81072375	81072575	+	947.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	ERVB5_1-I_MM-int|LTR|ERVK	108401.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	4.77583875402127	4.76687875075053	5.0863203866032	5.32294372044428	5.04111645618824	4.60327820655904	4.75428372318644	4.73397904534831	-0.442377483015378	0.222745326326132	0.53089448487962
Merged-chr11-99177254-3	chr11	99177124	99177324	+	871.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22147.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	3.36720271950641	3.69820714981711	3.64172954903	3.23259955161783	3.4700006827456	3.41918849857474	3.7199367072345	3.42545430107519	0.0789111372200759	0.880623611663132	0.955181994949486
Merged-chr10-89703235-4	chr10	89703144	89703344	+	871.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16881.0	NR_130956	69002.0	Mm.293947	NR_130956	ENSMUSG00000097383	1500026H17Rik	-	RIKEN cDNA 1500026H17 gene	ncRNA	3.67325924230879	3.60220334602687	4.03872128634431	3.8554471520862	4.23816285356067	3.96400934783411	4.10754237982416	3.99003918470028	0.764711604592401	0.0853371558966455	0.318041894659862
Merged-chr12-84589911-4	chr12	84589821	84590021	+	808.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301427, intron 3 of 4)	CpG	20093.0	NM_001301427	12677.0	Mm.4405	NM_007701	ENSMUSG00000021239	Vsx2	Chx10|Hox-10|Hox10|or	visual system homeobox 2	protein-coding	4.42646844848261	4.34455854091749	4.15555804002919	4.00282965515795	4.47597896251289	4.38029684954477	4.44645741396082	4.50327427828707	0.542972962929706	0.160370338103794	0.448561784654588
Merged-chr4-144930494-3	chr4	144930379	144930579	+	860.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37342.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	3.84316686223958	3.90370064635579	4.07536366199412	4.29489928683693	3.54206944437184	3.80042633640839	3.72333235918442	3.67967914287947	-1.09101809720246	0.0207163501524335	0.131107769849743
Merged-chr17-87265106-4	chr17	87265034	87265234	+	609.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176808, intron 1 of 4)	intron (NM_176808, intron 1 of 4)	813.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	3.48014952120108	3.45874505051766	3.35988944766521	3.75718212856584	3.42758048431145	3.70782852230234	3.62792899706363	3.73853771345658	0.277244399617918	0.587152447608115	0.819073308396926
Merged-chr2-164455989-3	chr2	164455895	164456095	+	870.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4976.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	3.95907633668107	3.3121379118662	3.37230832782029	3.1303774239204	3.66688693926332	3.55018797567834	3.36003978309798	3.69738700016653	0.321981341144435	0.568448148007618	0.808665348796528
Merged-chr13-67637376-4	chr13	67637279	67637479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183146, intron 1 of 3)	intron (NM_183146, intron 1 of 3)	374.0	NM_183146	212281.0	Mm.342918	NM_183146	ENSMUSG00000021510	Zfp729a	A530054K11Rik|Rslcan3	zinc finger protein 729a	protein-coding	4.91069579148187	5.1778199435583	5.14521785086683	5.05931023404283	5.92388516853117	5.66344313109984	6.05464989204599	5.33986846336586	1.2207854727895	5.41631414222329e-05	0.00121349645681244
Merged-chr14-54376108-4	chr14	54376000	54376200	+	964.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 6 of 11)	intron (NM_011405, intron 6 of 11)	15259.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	4.99462142130848	4.98525097296032	4.78654656113642	5.1120797875005	4.70736726148225	4.47039595990411	4.93878738839964	4.6646658593027	-0.56628446814329	0.0980961554471041	0.343275576826406
Merged-chr5-129779219-4	chr5	129779088	129779288	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133900, exon 3 of 8)	5' UTR (NM_133900, exon 3 of 8)	8065.0	NM_133900	100678.0	Mm.271784	NM_133900	ENSMUSG00000029446	Psph	AI480570|PSP|PSPase	phosphoserine phosphatase	protein-coding	4.91626654408182	4.88728603207259	5.18036790520472	5.23199859252973	4.93721025925126	4.9786981903571	4.8569696002945	5.08445427091808	-0.213993105042876	0.50393310993664	0.770592637321386
Merged-chr8-83749975-4	chr8	83749865	83750065	+	794.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-8654.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	3.65124233232271	3.80633099831528	3.70379663687436	3.37485232884085	3.89973022306082	3.46955070542153	3.58353327258783	3.75157190555025	0.187289280606142	0.708620233471583	0.882958762044294
Merged-chr19-60805074-3	chr19	60804961	60805161	+	758.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-6494.0	NM_001360619	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	3.33785258030663	3.62911373643799	3.50779405964293	3.61838254136164	3.2528435081566	3.25431206278352	3.6414022150076	3.39550977229473	-0.481271824441196	0.361315889052	0.66667409966046
Merged-chr11-101552730-4	chr11	101552637	101552837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252223)	promoter-TSS (NM_001252223)	83.0	NM_001252223	17966.0	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding	8.34746033011702	8.53854633500236	8.22331638763199	8.20247647566968	8.50905561946354	8.47105085895965	8.25445443957072	8.37549064031079	0.0957194777281404	0.561303365491749	0.804919855922082
Merged-chr7-75669601-4	chr7	75669463	75669663	+	963.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 10 of 36)	intron (NM_029332, intron 10 of 36)	-178775.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	5.75839367327775	5.44545214409018	5.31361479208011	5.32956847241245	5.137382862586	5.3642562642334	4.87237913706945	5.009765778616	-0.655789962297514	0.0366884808656196	0.190700261394329
Merged-chr11-77386538-4	chr11	77386427	77386627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	38247.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	6.21820377380191	5.97281876763967	5.64496604806754	6.39203213389342	5.76271459641279	5.76667270186916	5.91229628701704	5.58393443402737	-0.545082690958271	0.0521145025570645	0.237677345560035
Merged-chr5-21358818-4	chr5	21358712	21358912	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	-13861.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	4.11712811852082	4.38747581028791	4.0173302396408	4.12417468456047	4.39503421017532	4.03084867411544	4.27823834520383	4.25239668951706	0.210080060858626	0.605128814564238	0.828698063423653
Merged-chr17-29442246-4	chr17	29442169	29442369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48776.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	5.92759191561211	6.0278945148708	5.83555811695173	5.80057577298205	6.12421560285835	5.80411728714824	5.82972290795422	6.07225438027222	0.126529849355982	0.610526921334843	0.831780430511034
Merged-chr4-137796397-2	chr4	137796297	137796497	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007431)	promoter-TSS (NM_007431)	-13.0	NM_007431	11647.0	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	3.0002261187881	2.85210328261188	3.12296490877073	3.01365905662301	3.15861893640935	3.23398643514265	3.22145946448118	3.12132472281712	0.730907243751417	0.191303014312771	0.490711638465125
Merged-chr7-19357346-4	chr7	19357243	19357443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007948)	TTS (NM_007948)	2140.0	NM_145822	70333.0	Mm.171370	NM_145822	ENSMUSG00000047649	Cd3eap	1190028F09|2610103M17Rik|ASE-1|Ase1|CAST|PAF49	CD3E antigen, epsilon polypeptide associated protein	protein-coding	5.51545894826956	5.25893804825417	5.03964894296917	5.21423586741895	5.54259762878099	5.39598201479084	5.70547088089665	5.63843353902364	0.549395488895418	0.0541505902902254	0.242986669713085
Merged-chr7-3692263-6	chr7	3692202	3692402	+	889.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029934, intron 1 of 7)	intron (NM_029934, intron 1 of 7)	1223.0	NM_029934	77582.0	Mm.397541	NM_029934	ENSMUSG00000035596	Mboat7	5730589L02Rik|BB1|Leng4|Lpiat|Lpiat1|mBB1	membrane bound O-acyltransferase domain containing 7	protein-coding	2.79670443775397	3.16604028990559	3.13003897884973	2.81685250356125	3.30556316834976	3.11692372546704	3.11818377757116	3.34437570203184	0.976810026621677	0.0964884608146899	0.340348486057009
Merged-chr13-112353647-2	chr13	112353547	112353747	+	975.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 7 of 11)	intron (NM_001168403, intron 7 of 11)	65129.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	3.19795162655879	3.24315050347478	3.19833702619688	3.36551939025706	3.28308961325862	3.18079381464316	3.40451262668284	3.25541973130357	0.0831425576358591	0.876159022442417	0.953434078251473
Merged-chr8-85515613-4	chr8	85515490	85515690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 6 of 11)	intron (NM_173866, intron 6 of 11)	22973.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	5.847762743873	5.72827510016498	6.47048400750798	6.35028717633256	5.85920668068813	5.84039330453997	6.43724492630236	6.19326308761153	-0.0614349752453902	0.835944763283833	0.937569151339979
Merged-chr10-86949293-4	chr10	86949218	86949418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 17 of 68)	intron (NM_138673, intron 17 of 68)	58624.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	5.96612048481918	6.24134246488051	5.73295104396165	5.73838100743901	6.05589438507293	6.03057741920384	5.54058709884779	5.56456196061153	-0.167516200655665	0.561989204161723	0.805287062910723
Merged-chr9-123991706-3	chr9	123991601	123991801	+	685.633362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13293.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	3.52849680996469	3.61078039315175	3.4753014802936	3.62679127230375	3.49039037287362	3.20598349089657	3.46196951912989	3.47343699614866	-0.501762799711093	0.324014967608562	0.635521118198122
Merged-chr10-41580032-3	chr10	41579950	41580150	+	924.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 35 of 47)	intron (NM_001358562, intron 35 of 47)	12034.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	3.64532513614858	3.8521055431635	3.64581373584936	3.83394724135585	3.78029491132469	3.30392101541165	4.08391449305779	3.64383763229074	-0.0468889426152012	0.927484063274891	0.973535482508162
Merged-chr12-108333211-3	chr12	108333093	108333293	+	880.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1123.0	NM_010010	13116.0	Mm.41911	NM_010010	ENSMUSG00000021259	Cyp46a1	CH24H|Cyp46	cytochrome P450, family 46, subfamily a, polypeptide 1	protein-coding	3.74206025080804	4.32494328083893	4.2224220365498	3.68017282331553	3.72404193940316	3.9762480037437	3.93933907835577	4.00225124665348	-0.290632385019037	0.545100155061394	0.795760366239694
Merged-chr7-3286198-4	chr7	3286096	3286296	+	827.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2842.0	NM_001093764	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	3.83706713245406	3.87936947484902	3.83758879680674	3.99087667206597	3.90231020917128	4.01379022290005	4.38499752005332	4.21418925442526	0.639927451057712	0.14166885270711	0.418816599528155
Merged-chr1-156036099-4	chr1	156036022	156036222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160182)	promoter-TSS (NM_001160182)	86.0	NM_001160182	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	8.15098373835924	8.29465931221512	7.99938313257062	7.88608120291544	8.36491583131323	8.59431828114587	8.56017306475426	8.27748292770806	0.466757713451174	0.00763015611142365	0.0649493998869916
Merged-chr9-100458463-4	chr9	100458371	100458571	+	950.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033543, exon 7 of 7)	3' UTR (NM_001033543, exon 7 of 7)	28002.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	5.3374447564853	5.71314524931397	5.88450621974366	5.64280985081715	5.32126742640845	4.99626206819438	5.61225587994617	5.20416164733633	-0.61370004702609	0.0451099181136093	0.217215455378744
Merged-chr9-114691237-4	chr9	114691113	114691313	+	890.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146229, intron 2 of 12)	intron (NM_146229, intron 2 of 12)	2382.0	NM_146229	235661.0	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	4.13873182226896	4.05932265362368	3.98316836780765	4.26922870947281	4.29751240859428	3.99240478457206	4.21511275367068	4.9428872964322	0.693268359967552	0.125087804605964	0.392542105217475
Merged-chr4-126401158-3	chr4	126401053	126401253	+	857.211121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153402, intron 5 of 18)	intron (NM_153402, intron 5 of 18)	28389.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	4.14463017295312	4.30727103506975	4.47296827377108	4.39228548200023	4.04868736723384	3.8257242992756	3.92777429706521	4.23285721308167	-0.813840364126287	0.0531419590925172	0.240444860259687
Merged-chr4-32588419-4	chr4	32588339	32588539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	13943.0	NM_010289	14610.0	Mm.377084	NM_010289	ENSMUSG00000051056	Gja10	Cx-57|Cx59|cx57	gap junction protein, alpha 10	protein-coding	6.52206401360937	6.29362428725791	6.60646232664805	7.08577371225068	7.05248132937546	6.59373195719477	6.7927966293743	6.8493830065752	0.224728630253538	0.378611377999424	0.681182628403749
Merged-chr2-154569229-4	chr2	154569125	154569325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291105, exon 1 of 7)	5' UTR (NM_001291105, exon 1 of 7)	201.0	NM_001291105	13555.0	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|Tg(Wnt1-cre)2Sor|mKIAA4009	E2F transcription factor 1	protein-coding	5.81852861145419	5.88648720310853	5.99011284905121	5.91009526881398	6.2339791917341	6.50291942298435	6.34684553120682	6.50217086891887	0.75179678004777	0.00106258653725881	0.0141320737407411
Merged-chr3-51796573-4	chr3	51796462	51796662	+	924.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	135383.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	4.48608421498634	4.33510227877775	4.75132381970598	4.41841762509377	4.37864198278427	4.53010191311158	4.38032414908705	4.8143439016381	0.0776060745252265	0.838002819524665	0.938474063450959
Merged-chr9-107888569-2	chr9	107888469	107888669	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028369, intron 1 of 5)	intron (NM_028369, intron 1 of 5)	440.0	NM_028369	72825.0	Mm.38037	NM_028369	ENSMUSG00000032583	Mon1a	2810468K17Rik	MON1 homolog A, secretory traffciking associated	protein-coding	2.98833783206569	2.83412582919133	2.92929367817727	2.83831458196726	2.90843887188815	2.83788569745877	2.97748040401161	3.04368139546509	0.219297399555958	0.710262612434479	0.884037714929946
Merged-chr19-10831928-8	chr19	10831828	10832028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1870.0	NM_009852	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	6.46623291695399	6.61285859528084	5.97998062764192	6.2112430303008	6.69882883707092	6.53845026914126	6.62089906726933	6.46274932286061	0.368147187558094	0.12027232923809	0.383878670524338
Merged-chr4-41275466-4	chr4	41275358	41275558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026872)	promoter-TSS (NM_026872)	-323.0	NM_026872	68926.0	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	7.27041909291564	7.06366898742002	6.40697388434109	6.91620130395545	7.14853145635421	7.15437525313923	7.1305746335147	6.95980405449852	0.206758581592038	0.369393836725519	0.673680696515046
Merged-chr4-42880593-4	chr4	42880488	42880688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6354.0	NM_177785	277773.0	Mm.212727	NM_177785	ENSMUSG00000050141	Fam205c	4931430D02|FAM205CP	family with sequence similarity 205, member C	protein-coding	6.24292345246091	6.81547500059394	6.26242269134354	6.01191590159284	5.93352985151517	6.1541468252795	5.82706999669955	5.66383314186177	-0.707844871097911	0.0131183541457703	0.0955928879752034
Merged-chr3-130730379-4	chr3	130730278	130730478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026724)	promoter-TSS (NM_026724)	20.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	8.35431927285992	8.32760087024309	8.08278718273858	8.11317250317269	8.61603503244754	8.58161247883186	8.70560133754811	8.59646425969424	0.511236702034842	0.000987778051780276	0.0133060283776814
Merged-chr9-65493084-4	chr9	65493006	65493206	+	966.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30405.0	NM_001357813	27965.0	Mm.272475	NM_138584	ENSMUSG00000032388	Spg21	ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST	SPG21, maspardin	protein-coding	4.85095493292889	4.53793635109356	4.50258679388955	5.00499000670443	4.80216832371299	4.2156829039186	4.86139673340446	4.74252386556245	-0.14560272281344	0.709806406481315	0.883774219565378
Merged-chr2-152763565-4	chr2	152763542	152763742	+	845.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053091, intron 4 of 4)	B1_Mm|SINE|Alu	9469.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	3.56632605343552	3.18523071100109	3.35260628220432	3.36889016500057	3.40132166056266	3.46677928365373	3.15525465968875	3.65943412079498	0.203531011169223	0.704212450983593	0.881181668809527
Merged-chr14-26643429-4	chr14	26643322	26643522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	5288.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	6.32291587316787	6.53743066364706	5.98480327448292	6.45871812817702	6.4697328273778	6.53658139273767	6.54241449974439	6.28177242809733	0.158559501285539	0.499251886848009	0.768235079100557
Merged-chr12-36205941-3	chr12	36205855	36206055	+	856.7666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	12263.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	4.6644104375504	4.13519681946906	4.1149298745052	4.3421759956657	3.68034463030619	4.04084295256181	3.60566899078111	3.80267362431649	-1.49366000392359	0.00142948560556705	0.0179566683470772
Merged-chr2-32450000-4	chr2	32449903	32450103	+	977.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194335)	promoter-TSS (NM_194335)	-454.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	4.91081573851646	4.86333562621026	5.27922828621716	5.39912271113118	5.4407915089293	5.01069233702951	4.99866380233556	5.27555138851888	0.104078142135129	0.757869616172713	0.90490952828044
Merged-chr2-113399115-3	chr2	113399022	113399222	+	846.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-41942.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	3.50487982416273	3.8638391229446	3.77626147287626	3.63986116498752	3.59470592900037	3.49355102864626	3.85320436262382	3.77401955377494	-0.0495402541867511	0.917960712132189	0.969760089182615
Merged-chr4-95924923-4	chr4	95924814	95925014	+	915.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 15 of 15)	L1_Mus1|LINE|L1	42121.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	4.10175609507735	4.11225246729157	4.28756230720852	4.33689161521624	4.42339279802838	4.12132274221665	4.26848714435619	4.36814636330114	0.2058802617636	0.602591445755745	0.827756460571785
Merged-chr6-97820824-4	chr6	97820738	97820938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	13780.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	7.36989198260936	7.89833386987681	7.54661605423123	7.54778265225572	7.63947889922804	7.94796786395067	7.63035075288693	7.26820970624033	0.0470360249958191	0.825039631555572	0.932930565831813
Merged-chr6-65590346-4	chr6	65590269	65590469	+	969.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001495)	promoter-TSS (NM_001001495)	-29.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	4.47662056467117	5.23964466208778	4.69164652683684	4.27787355242344	5.01235868046871	4.90466103286996	4.58877076833818	4.64846551385077	0.172447519854594	0.675629412571434	0.866888255203643
Merged-chr17-10725073-4	chr17	10724973	10725173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	115118.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	7.32052698022793	6.90552773707932	7.20139952105161	7.49137764597276	6.54603901539808	6.43980743407222	6.97261167602922	6.63452842415331	-0.82407991671309	0.000345443883079336	0.00568911387175012
Merged-chr18-56727426-3	chr18	56727319	56727519	+	902.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010721, intron 1 of 10)	intron (NM_010721, intron 1 of 10)	19606.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	3.30980353157679	3.38323418598214	3.31022307004403	3.60277684250417	3.30270590822014	3.23507770238174	3.24038980255897	3.30852633111726	-0.529759230854914	0.32167156252144	0.633233286881578
Merged-chr11-31871438-4	chr11	31871327	31871527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290676, exon 1 of 9)	5' UTR (NM_001290676, exon 1 of 9)	487.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	6.12734372906065	6.62114910554944	6.16722108292529	5.99825042670484	5.88837225890959	5.89131494662765	5.44610375917842	5.93312423374777	-0.69237040579536	0.0130903222692432	0.0954863751590962
Merged-chr13-22044356-4	chr13	22044265	22044465	+	962.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178198)	TTS (NM_178198)	1135.0	NM_178198	319183.0	Mm.371766	NM_178198	ENSMUSG00000069300	Hist1h2bj	-	histone cluster 1, H2bj	protein-coding	4.42756536266571	4.65307191513371	4.51417868385551	4.51745522588656	4.55195834888706	4.6020882572184	4.64862093229925	4.55224367143251	0.124328308070033	0.722400374650193	0.889150263279452
Merged-chr13-34204489-4	chr13	34204377	34204577	+	840.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 4 of 10)	MIR|SINE|MIR	41513.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	4.09868711830956	4.0555983246071	4.05197818338362	4.19383080473278	4.10505281654508	3.84559956917184	4.32930452330756	4.09683298402354	8.7477206231444e-05	0.999833265149383	0.999903503808524
Merged-chr9-110071246-4	chr9	110071144	110071344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205330, intron 14 of 18)	intron (NM_001205330, intron 14 of 18)	19223.0	NM_001311164	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	5.40202349303952	5.32869336293841	5.68606920999733	5.47887306924353	5.39906787745209	5.05814724072126	5.51166757581011	5.3991895560648	-0.212928362804064	0.463581039087167	0.744892202383526
Merged-chr3-96278188-4	chr3	96278095	96278295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	8495.0	NM_175666	319189.0	Mm.297655	NM_175666	ENSMUSG00000105827	Hist2h2bb	H2b-616	histone cluster 2, H2bb	protein-coding	6.21430328121527	6.20453460437229	5.9679185032465	6.06924402811245	5.88190886449123	6.21018464199789	6.34074298397563	5.81917633722367	-0.0648598304557777	0.797048005772066	0.92148521127958
Merged-chr6-39779406-4	chr6	39779336	39779536	+	894.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31500.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	4.31245071695643	4.05276687477011	4.60353998545437	4.90728095574691	4.5299886543232	4.53273958516536	4.38321388564398	4.21403935519349	-0.233648975332892	0.588075274900013	0.819488296454385
Merged-chr19-6340123-4	chr19	6340025	6340225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001168488, exon 10 of 10)	exon (NM_001168488, exon 10 of 10)	-1035.0	NM_009006	26412.0	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	4.89642834051093	5.19924729314376	5.29569049052947	4.6623002986519	5.51078052372591	5.18490575542283	5.21124428426983	5.00566993020314	0.430329792494287	0.208119477758261	0.512299580071882
Merged-chr15-101973887-4	chr15	101973791	101973991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19604.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	6.42817572829694	6.47620807079953	6.18483629853851	6.10988970152699	6.49774877800947	6.604763833541	6.49449552005196	6.29907058896484	0.267635328397113	0.240774319161507	0.551329427813959
Merged-chr5-130219642-4	chr5	130219541	130219741	+	896.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081394)	promoter-TSS (NM_001081394)	-103.0	NM_001081394	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	4.23659303801206	4.42670222829135	4.3701005292425	4.12560057225115	4.42273643100055	4.316271978696	4.07248061743752	4.56154821511801	0.174250774296572	0.661034740803564	0.859233242450522
Merged-chr3-87804245-3	chr3	87804165	87804365	+	915.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011832, intron 6 of 21)	intron (NM_011832, intron 6 of 21)	7314.0	NM_011832	23920.0	Mm.42041	NM_011832	ENSMUSG00000005640	Insrr	Irr	insulin receptor-related receptor	protein-coding	3.6448105092844	3.6847809891674	3.79645933043673	3.60425874863048	3.37358596606917	3.59080123211207	3.46175105734235	4.01120382364274	-0.159755779729991	0.752962176566769	0.902713603306311
Merged-chr9-66599793-4	chr9	66599710	66599910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6695.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	7.4619921909456	7.34086842768727	7.52578780594378	7.48195864369949	7.1824354841371	7.17913787466534	7.24941261853919	7.13505648129575	-0.361350370139831	0.0392491195155878	0.199351582560299
Merged-chr15-59646396-3	chr15	59646297	59646497	+	855.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2257.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	3.48284038153103	3.48692832649801	3.04323829987716	3.22287315939329	3.58108695030721	3.54399073084256	3.46921340534004	3.53363503290843	0.735895214337944	0.160609170962363	0.448824160022381
Merged-chr11-120633653-4	chr11	120633562	120633762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010756)	promoter-TSS (NM_010756)	-115.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	6.95388251899098	7.32764094731828	6.4149978882342	6.61919467532336	7.08069218217706	6.9996517122295	6.60944125469226	6.74636387183177	0.00244410064293484	0.992564929237231	0.997258162727074
Merged-chr12-55315406-4	chr12	55315306	55315506	+	881.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025373, intron 3 of 6)	B1F|SINE|Alu	-12406.0	NM_021529	59032.0	Mm.427307	NM_021529	ENSMUSG00000021022	Ppp2r3c	4930511A21Rik|5730412A08Rik|G4-1|G5pr	protein phosphatase 2, regulatory subunit B'', gamma	protein-coding	4.28998907950137	4.03571356910085	3.79280101916028	4.58185632497413	4.20428142944048	4.32921755519924	3.99667813878415	4.28795647958639	-0.0485886013180895	0.916125329587775	0.968918528564949
Merged-chr13-33077304-6	chr13	33077236	33077436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-6767.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	5.64587480572377	5.65200643249276	6.35804194040911	5.77475719389742	7.24078698415403	6.93709114210019	7.27123601192937	7.11157672888829	1.84009035655008	7.95525134364576e-14	1.06237680185621e-11
Merged-chr19-5834001-4	chr19	5833917	5834117	+	883.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	11461.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	4.14088144373611	4.25993694036599	4.45976060293045	4.16416114076169	3.95129663317392	3.8375465218485	3.82198102180507	4.09292528850044	-0.861976538473393	0.0443261420868211	0.21472794113475
Merged-chr17-27552824-2	chr17	27552724	27552924	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3750.0	NM_001166536	15361.0	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	3.14335424993111	3.08487010747819	3.14376451209876	2.9018743128683	3.11696411363444	3.13089670968064	3.01054705588808	3.40595938675342	0.43822101936452	0.442114390315313	0.728953187628121
Merged-chr9-121301151-3	chr9	121301059	121301259	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	ORR1D2|LTR|ERVL-MaLR	3657.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	3.27690027272077	3.17464567961365	3.65312313715767	2.73760220903049	4.44179118288252	4.69960620200426	4.94099759322557	4.65478947223338	4.80077234641004	2.04831440660015e-16	4.14195940759637e-14
Merged-chr17-45703477-3	chr17	45703373	45703573	+	844.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17124.0	NM_026732	68463.0	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	3.37735468933266	3.19918940255861	3.45114130927278	3.31170954246449	3.82402574125114	4.67488617640971	4.76962419397631	4.07631117908564	2.97364864379447	6.06167666554392e-08	2.71874028592786e-06
Merged-chr4-43875596-4	chr4	43875488	43875688	+	956.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016678)	promoter-TSS (NM_016678)	58.0	NM_016678	53614.0	Mm.331573	NM_016678	ENSMUSG00000028476	Reck	St15|mRECK	reversion-inducing-cysteine-rich protein with kazal motifs	protein-coding	5.09986863103894	4.86518437074077	5.5388355063637	4.97172206342291	4.41810936885407	4.70907934511489	4.59787111695301	5.06595175492995	-0.85161164257866	0.0237601958815883	0.143412827185494
Merged-chr4-118107460-3	chr4	118107393	118107593	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285520, intron 2 of 11)	intron (NM_001285520, intron 2 of 11)	27453.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	4.89378567639717	4.78905124167397	4.92373411978865	4.817023944896	3.72417779070416	4.17973363779628	3.7899391117885	3.73365016110448	-2.58466919285251	7.16897603860027e-09	3.92825670093556e-07
Merged-chr4-119912425-4	chr4	119912310	119912510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	97732.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	5.63830751524665	6.02383135612939	5.79087556144705	5.73057124809389	5.62471163962797	6.01143935138335	5.66309247241102	5.58054062674204	-0.128656701420253	0.631942283233129	0.843636666383789
Merged-chr13-98997234-4	chr13	98997125	98997325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12660.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	6.41196655313795	6.62103596039683	6.41309847516147	6.64636210963804	6.82954512078354	6.47768570187506	6.54768851094785	6.42637201704813	0.0779886112189428	0.726476047709118	0.891094191532232
Merged-chr7-66080373-4	chr7	66080299	66080499	+	766.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024439, exon 2 of 6)	exon (NM_024439, exon 2 of 6)	750.0	NM_024439	109815.0	Mm.482127	NM_024439	ENSMUSG00000075701	Selenos	1500011E07Rik|C78786|H-4|H-47|H4|H47|Sels|Vimp	selenoprotein S	protein-coding	3.82534460623511	3.80821803353561	3.92372537357218	3.58984846767199	4.0340283697113	3.66047918176915	4.03899678976815	3.77191026899862	0.326635617396578	0.478621008634583	0.7546131390068
Merged-chr3-31084137-4	chr3	31084032	31084232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamRep605|LTR?|LTR?	-10926.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	7.8007968759982	8.2077853901702	8.1859225635528	7.8245342208338	8.12884701579437	8.13513624465096	7.77213406008144	7.62836929363699	-0.100312752922636	0.621429961066339	0.837821066365015
Merged-chr10-58446024-3	chr10	58445910	58446110	+	959.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011240)	promoter-TSS (NM_011240)	-842.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	4.46540085167873	4.34660731186476	4.33662116521569	3.91398984341722	4.38913061315163	4.55534835578175	4.48533527768969	4.75482685528091	0.668336345058931	0.0947178953184784	0.336772146565414
Merged-chr18-9504335-5	chr18	9504220	9504420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54166.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	6.30302679049953	6.05155780592767	6.06102226145291	6.33151077997591	5.95703487689014	5.54845861649624	5.50342329694929	6.17469823750945	-0.573826823229345	0.0373827434024928	0.192960399712849
Merged-chr4-130087543-2	chr4	130087439	130087639	+	741.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_028266, intron 55 of 69)	intron (NM_028266, intron 55 of 69)	-20017.0	NM_026441	67898.0	Mm.20818	NM_026441	ENSMUSG00000028779	Pef1	2600002E23Rik|Peflin	penta-EF hand domain containing 1	protein-coding	3.22892828372639	3.06443853876676	3.03958313473777	3.2109428695878	3.13032524392502	3.65975497452537	3.21714634497959	3.28517367620827	0.70029899047276	0.213474594032473	0.518898614507987
Merged-chr9-40320146-3	chr9	40320068	40320268	+	826.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	1155.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	3.15602741696007	2.94052235719816	3.34839149567391	3.06238336713072	2.70523176576515	2.82239523063387	2.84981878636638	3.04383933719213	-1.25003684562001	0.0506782192808988	0.23339651366127
Merged-chr2-157688685-4	chr2	157688541	157688741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-48760.0	NM_025680	66642.0	Mm.45193	NM_025680	ENSMUSG00000027649	Ctnnbl1	5730471K09Rik|NAP|NYD-SP19|P14L	catenin, beta like 1	protein-coding	4.83643636097173	5.31261169705868	4.79643598905979	4.74079221397919	5.46994493994122	5.26542477365777	5.13045009122838	5.08817526628229	0.601905903021778	0.070961575413953	0.285688573325213
Merged-chr8-84465751-1	chr8	84465651	84465851	+	932.0	f0_balb.idr	intron (NM_001252060, intron 3 of 47)	RLTR12B|LTR|ERVK	50387.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	3.28442271504578	3.660778747159	3.88386579032987	3.80467305053958	2.7407229259605	2.82632898460209	2.7909975553386	2.79679473456081	-5.19806515880762	6.34920097346824e-07	2.31047942786552e-05
Merged-chr13-62383177-4	chr13	62383067	62383267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162910)	promoter-TSS (NM_001162910)	7.0	NM_001162910	100041979.0	Mm.445930	NM_001162910	ENSMUSG00000094942	Gm3604	-	predicted gene 3604	protein-coding	5.79366913993214	5.701320003848	6.15027949977934	5.80210596512154	5.83449851833756	6.20377532880849	6.3306721453396	6.30890068349134	0.48416223208698	0.0648584838425992	0.270857845453165
Merged-chr3-9752430-3	chr3	9752311	9752511	+	825.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	81268.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	3.91334989421135	3.43084016475721	3.60720946177436	4.2612476006363	4.003251189265	3.60276018573572	3.41095526725063	3.76752507399146	-0.384948952720573	0.492245597801597	0.763376447368555
Merged-chr3-84946619-2	chr3	84946519	84946719	+	672.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177774, intron 3 of 12)	intron (NM_001177774, intron 3 of 12)	-5592.0	NM_080428	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	3.17330527592569	3.1821318531105	3.03475642774012	3.17710897659443	3.1917720818366	3.53365169277648	3.28713118161142	4.01571535620442	1.37400382955545	0.0180476010104553	0.119361848121332
Merged-chr14-64070133-2	chr14	64070033	64070233	+	768.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15277.0	NM_001081063	71037.0	Mm.19977	NM_001081063	ENSMUSG00000034623	Prss55	4933401F05Rik	protease, serine 55	protein-coding	3.22723678557324	2.95190648921397	3.33200154376129	2.94105119809273	2.79698478477322	3.16513989257021	3.04236004281714	3.17038517859752	-0.280887362461296	0.643881679472361	0.849978747462225
Merged-chr9-40455606-7	chr9	40455512	40455712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172768, exon 1 of 20)	exon (NM_172768, exon 1 of 20)	152.0	NM_172768	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	4.59738729557187	4.3989454218917	4.63567141925131	4.50317398437957	4.37165111960657	4.52129154444924	4.28051579437098	4.66899256738797	-0.154225941095839	0.676032494607588	0.867014726144001
Merged-chr14-93654007-3	chr14	93653954	93654154	+	927.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081377, intron 2 of 4)	LTR50|LTR|ERVL	236615.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	3.99342641011791	3.70225192538194	4.19172957168209	4.11071922286267	3.4266637910103	3.45461653832013	3.46049394751655	3.53320208503717	-1.73777551744122	0.000595916273399246	0.00888680587141943
Merged-chr7-101884334-4	chr7	101884235	101884435	+	904.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291353, intron 1 of 5)	ORR1E|LTR|ERVL-MaLR	-1525.0	NM_001291352	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	4.50565427632294	4.34883991462201	4.14672235580691	4.47052670316069	4.51111717874874	4.37329962393193	4.40539107528987	4.50345365920106	0.161350334659839	0.66701283679207	0.862204789067879
Merged-chr9-78050572-4	chr9	78050487	78050687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1371.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	7.16055652107913	7.81497160897391	7.69153768821813	7.39239780751932	7.60896219955662	7.5521122729368	7.56298695970111	7.52433539332015	0.0339659542926246	0.866070557894804	0.949847247968355
Merged-chr12-52372965-3	chr12	52372872	52373072	+	933.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	107637.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	3.26088030367248	3.1592170587621	3.26126227942532	3.30431637695838	3.88100260348113	3.71835008490825	3.37137865225247	3.54717341966452	1.32781420263461	0.0110036477834965	0.0845077487493869
Merged-chr19-21284941-1	chr19	21284841	21285041	+	549.0	f1_c57bl6.idr	3' UTR (NM_009551, exon 6 of 6)	3' UTR (NM_009551, exon 6 of 6)	12663.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	3.20122076444475	3.85685366136956	3.01825541737447	2.39878264963565	3.05875446899625	3.06742502577289	2.72123141961718	2.94972033499758	-1.04916915357058	0.183108876763995	0.479931757527872
Merged-chr11-82952800-4	chr11	82952698	82952898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183201, intron 1 of 5)	intron (NM_183201, intron 1 of 5)	696.0	NM_183201	327978.0	Mm.42147	NM_183201	ENSMUSG00000054404	Slfn5	AI956840	schlafen 5	protein-coding	6.84255844266416	6.60653556670366	6.74861001453504	6.67376800508495	6.6390515759843	6.51215856812698	6.32108612479021	6.85191333741632	-0.169915545307626	0.437484144568611	0.725725477538789
Merged-chr13-6639774-3	chr13	6639679	6639879	+	806.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019703, intron 1 of 21)	B1_Mur3|SINE|Alu	8992.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	3.22214485979405	3.74202726993112	3.41666059673774	3.54433819293659	3.85831100932147	3.46847549881249	3.71934595972646	3.53008850239505	0.503378346355755	0.334611758924463	0.64510645689286
Merged-chr17-31291071-4	chr17	31290962	31291162	+	972.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4421.0	NM_153062	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	5.45723016391519	4.8271985723369	5.52979000231423	5.11743968364555	4.92981048827009	4.79925297673612	5.06386692698779	4.87040714273065	-0.633781105877187	0.0644069511431041	0.269640182061817
Merged-chr19-34234109-4	chr19	34234003	34234203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360716, exon 6 of 11)	exon (NM_001360716, exon 6 of 11)	1478.0	NM_001360720	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	5.40196880731925	5.2108485442628	5.57604297825645	6.10935010002721	5.76700019893801	5.34755801095375	5.83417229623928	5.6249118291249	0.0272712979982229	0.934444785471927	0.976356212091203
Merged-chr5-99243507-3	chr5	99243342	99243542	+	915.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	9485.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.57565875916271	3.65754404194046	3.27898637138605	3.35380190839754	3.80746625419833	3.63802127639448	3.45226981358701	3.62614670645437	0.553972004671543	0.270147386451554	0.581968488248999
Merged-chr19-11912912-4	chr19	11912812	11913012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172635, intron 1 of 18)	CpG	513.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	6.35158986719765	7.23833641157297	6.46065272946362	5.70677490174531	7.00095246367106	7.00742635541258	6.11792270942751	5.95626680987638	0.0646291449234628	0.911754526994247	0.967021434294281
Merged-chr16-57559540-3	chr16	57559472	57559672	+	685.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	MIRb|SINE|MIR	10330.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	3.8325697654371	3.93107441406807	3.83316594119143	3.70206178625517	3.16965893471105	3.38102070873219	3.61999525968159	3.57802835241906	-1.25312647847276	0.0160901205553894	0.110091193983664
Merged-chr11-110436307-3	chr11	110436214	110436414	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	MER20|DNA|hAT-Charlie	37212.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	3.52863848999772	3.2962559188905	3.41094746473378	3.28458159672853	4.07868470186503	3.90672315538103	3.3361714092151	3.63542710537846	1.26005895427791	0.0158140565025702	0.108865577367754
Merged-chr12-4592548-2	chr12	4592448	4592648	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198968)	promoter-TSS (NM_001198968)	-460.0	NM_001198969	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	4.03992941797347	3.59147031246815	3.4660133464935	3.75710265152911	3.58800259131566	3.58144469550718	3.5119254522285	3.52322875095563	-0.562022077347723	0.260597718894674	0.572414288943188
Merged-chr14-30593348-4	chr14	30593226	30593426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	16984.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	8.02066158165025	8.00643733248497	8.0087351048516	7.77885306065275	8.00366322609504	7.96053730941665	7.99017491851171	7.80143588258588	-0.0082787977945405	0.960200343474104	0.985822675188496
Merged-chr17-33929919-4	chr17	33929830	33930030	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009059)	promoter-TSS (NM_009059)	36.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	5.2528143693779	5.28281309001575	4.70566672916864	5.12734853684521	5.13305349199585	5.3027342161297	5.07079485310237	5.36354632383518	0.193341011943914	0.543849542245005	0.794912862282994
Merged-chr4-134095136-4	chr4	134095055	134095255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013706)	promoter-TSS (NM_013706)	-82.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	5.74713053852288	5.80139350395914	5.51788837951196	5.31425905588086	6.46809757733987	6.30746813925857	6.2640024916293	6.3089818239052	1.1923841954109	2.37912360433588e-06	7.64876418396675e-05
Merged-chr3-104511964-4	chr3	104511860	104512060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310698)	promoter-TSS (NM_001310698)	-42.0	NM_001310698	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	8.12771324592279	8.31681166313215	8.35781542162268	8.40743318812406	8.39655925724649	8.38772290049562	8.46495191899412	8.19859498188859	0.0698973997647179	0.661045735610383	0.859233242450522
Merged-chr15-58250191-4	chr15	58250074	58250274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-35282.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	7.63686186727564	7.85760577529205	7.75711855395766	7.49015392905342	7.49093014129179	7.48420951174356	7.18057802014871	7.26852952660444	-0.425025305946138	0.0250677042857344	0.14867878704727
Merged-chr17-37028350-1	chr17	37028250	37028450	+	629.0	f0_balb.idr	Intergenic	Intergenic	-4952.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	3.56541622276184	3.33740903093718	3.34482385185186	3.54387693961423	3.38864942803745	3.51749660166189	3.55115727321563	3.45823705135739	0.0636875512334216	0.898997929327292	0.962375626232471
Merged-chr4-107738041-2	chr4	107737904	107738104	+	615.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-53842.0	NM_019872	56296.0	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	3.11076691569254	3.05242224951245	2.9191351352354	2.68684335764866	3.11799242309846	3.28322606184211	3.31508065490155	3.10951221401161	1.08969213426026	0.0657251324767763	0.272927437405313
Merged-chr15-67301854-1	chr15	67301754	67301954	+	765.666687	f0_balb.idr	intron (NR_045140, intron 5 of 8)	intron (NR_045140, intron 5 of 8)	75085.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	3.85381142472416	3.72075493699648	3.85445379727505	3.66236162496463	3.10330959737838	3.10934455593518	3.39487685678133	3.07265818815501	-2.22723112979393	0.000139082733137334	0.00267850916179175
Merged-chr16-10496203-4	chr16	10496131	10496331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302619, intron 2 of 19)	intron (NM_001302619, intron 2 of 19)	6450.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	5.3159902980846	5.63527705821628	4.8990005986564	4.99463067981919	5.26421386504482	5.4305962145931	5.34805167132609	5.39928473578951	0.217568396663633	0.500681078112278	0.768954784856382
Merged-chr1-88567369-4	chr1	88567255	88567455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	15838.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	7.90391915010736	8.08756568372879	7.5716577939492	8.01231450033738	8.02932283000608	8.2407710138149	8.29025866443524	7.95712535948351	0.283025430659494	0.129549924404062	0.400540095089772
Merged-chr15-39785544-7	chr15	39785434	39785634	+	981.9206539999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164466, intron 8 of 9)	intron (NM_001164466, intron 8 of 9)	-11511.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	4.30411449806718	4.20172238315259	4.74490716214148	3.93698670543378	4.40336838888328	4.34162883764997	4.24111097599581	4.06194748557459	-0.110677105856034	0.801287328923078	0.923340719847852
Merged-chr7-113180446-4	chr7	113180368	113180568	+	951.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-26997.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	4.64616103969403	4.51895874333271	4.80002884092763	5.36247618574399	4.80135565358279	4.03428839886095	4.84643347514338	4.76025143590498	-0.487614008789082	0.274107400227891	0.585845782661322
Merged-chr4-41073586-4	chr4	41073505	41073705	+	889.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24578.0	NM_016689	11828.0	Mm.34043	NM_016689	ENSMUSG00000028435	Aqp3	AQP-2	aquaporin 3	protein-coding	4.59851640407682	4.40358452160443	4.78684862704988	5.06838467601774	4.70481864699516	4.69028414129577	4.40706632822358	4.4237408906669	-0.402997993704266	0.29899635768437	0.611295755956218
Merged-chr8-83740737-2	chr8	83740637	83740837	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	B3|SINE|B2	574.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	6.58314412451983	7.3371268059866	5.49217900661823	5.13629057124486	6.70261457244822	7.12996406943335	6.38734348485971	6.10151749250425	0.270334005831123	0.72039344999257	0.888262296532504
Merged-chr13-67527153-6	chr13	67527021	67527221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133228)	promoter-TSS (NM_133228)	-890.0	NM_133228	170763.0	Mm.491205	NM_133228	ENSMUSG00000097333	Zfp87	2210039O17Rik|4631412O18Rik|KRAB4|Mzf22|Zfp72	zinc finger protein 87	protein-coding	4.08112444749687	4.11051102000386	4.61188144296527	4.35427105428083	4.44502018733131	4.41204009042978	4.35408446080457	4.77727519399943	0.459204094204899	0.251639532998303	0.56294436285486
Merged-chr1-127207262-5	chr1	127207048	127207248	+	852.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	2162.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	3.38901141467979	3.3378937740987	3.72365947350598	3.68991372838903	3.60300714301113	3.5041152404761	3.9291540472053	3.72143727440331	0.447388090827838	0.377934906568974	0.680590717873628
Merged-chr5-43094583-4	chr5	43094471	43094671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138892.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	6.03501680883863	6.14010096319139	6.14641610014155	6.82650911175545	6.27632011992488	6.424351946176	6.34493516322692	6.50640866049153	0.0486665638642998	0.859417172722875	0.94678081034563
Merged-chr16-32672443-3	chr16	32672335	32672535	+	988.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347185)	promoter-TSS (NM_001347185)	-719.0	NM_001347185	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	4.33988208803573	4.64646003651335	4.09649207211421	3.52701495998289	4.91063162206344	4.42625161230182	4.5611462355325	4.19697606867664	0.7721061194852	0.116686821492195	0.378010707582057
Merged-chr10-80150473-3	chr10	80150380	80150580	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347117, intron 2 of 7)	CpG-1261	798.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	3.80123568818578	3.33624903385543	3.6345636219315	3.45851152631455	3.92734912863239	4.33194356176002	3.67778932318482	4.20060538611596	1.41988223260165	0.00381580147558342	0.0386296306685468
Merged-chr7-35026077-4	chr7	35025972	35026172	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	30494.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	4.87016678946745	5.24878693386006	4.87095065310208	5.31014143415721	5.19523452683711	5.20325252085176	5.52812679151082	5.59960784109366	0.509557465009245	0.116902080603724	0.378293562110905
Merged-chr19-24999467-4	chr19	24999363	24999563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028785)	promoter-TSS (NM_028785)	-66.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	6.39703845035718	5.83610080915846	5.85704436732325	6.18562161452719	6.160169180859	6.32162031837318	5.96831941027504	6.16191496839158	0.0977804950370202	0.702631976433098	0.880333763717088
Merged-chr7-67458084-4	chr7	67457961	67458161	+	960.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	-85203.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	5.05075911918295	5.16630205607557	5.27800429521315	5.33346045882181	5.39252424750056	4.86952806494863	5.33700989427823	5.21374283403478	0.0160814142025526	0.958672571131343	0.985248919859626
Merged-chr4-3780559-4	chr4	3780444	3780644	+	979.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	B3A|SINE|B2	55111.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	4.79144694270154	5.33323729896172	4.87063896012206	4.61826247241949	5.09254295251857	5.34582026440155	5.23445039446006	4.66210367562971	0.349598637373061	0.342126780323029	0.651094649928157
Merged-chr4-148074751-3	chr4	148074654	148074854	+	720.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	13310.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	4.24197803421988	4.29547646984463	4.06649658651342	3.96910833518123	3.68426984747439	3.98483072509573	3.84710919747035	4.28028853065694	-0.488466872343886	0.280734336134083	0.592861276121877
Merged-chr17-5890566-3	chr17	5890465	5890665	+	939.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 3 of 17)	intron (NM_025664, intron 3 of 17)	49185.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	3.62366134287798	3.71516004909798	3.62414199248921	3.86822583457913	3.68181150278993	3.68385921241896	3.61024057364384	3.7268969793539	-0.147213464483773	0.753023820013392	0.902728126058665
Merged-chr11-69088709-6	chr11	69088670	69088870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009497, intron 1 of 4)	CpG	242.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	4.70146170386886	4.73405783600118	4.78050068103284	4.56977725059964	4.84969052949955	4.99094464422637	4.86601489614805	5.07951141662305	0.530148802872199	0.103971041075469	0.354381781004204
Merged-chr12-84698689-4	chr12	84698541	84698741	+	917.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033334, exon 1 of 4)	5' UTR (NM_001033334, exon 1 of 4)	166.0	NM_001033334	627191.0	Mm.152484	NM_001033334	ENSMUSG00000071234	Syndig1l	DSPC1|Gm261|SynDIG2|Tmem90a	synapse differentiation inducing 1 like	protein-coding	3.96226365814922	3.90453054138931	4.51150007644575	4.09826226998595	4.09293525829219	4.1385436834538	4.26757013417125	3.96056927546234	-0.0458174865466624	0.916117406998966	0.968918528564949
Merged-chr13-9277442-7	chr13	9277299	9277499	+	997.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	874.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	5.09786746382792	5.49005341516466	5.65100514069997	5.06061118012651	5.346223745054	5.53545432005217	5.44676619650735	5.41513969590939	0.175378468548786	0.567512385639323	0.808303453536389
Merged-chr11-32562874-3	chr11	32562781	32562981	+	977.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	29615.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	4.66332816348458	4.69552468128093	4.58960422956998	4.57652142947081	4.33932594917777	4.79770536385427	4.17020868756533	4.01884916498919	-0.612284768094006	0.130371977049055	0.40193242336713
Merged-chr1-155084635-4	chr1	155084536	155084736	+	734.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1372.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	3.52435770177428	3.94533649616151	3.45985978166089	3.56806738874885	4.14229908717037	3.98151891388166	3.98138614981514	3.85743139010035	1.03208150039175	0.0276075241266396	0.158512217456649
Merged-chr16-13780729-4	chr16	13780639	13780839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039521)	promoter-TSS (NM_001039521)	40.0	NM_001039521	106298.0	Mm.288606	NM_001039521	ENSMUSG00000022682	Rrn3	AL023001|E130302O19Rik|R75565|TIF-1A|Tif1a	RRN3 RNA polymerase I transcription factor homolog (yeast)	protein-coding	7.51775265907876	7.2173207275208	7.33668702297977	7.55464465929246	7.33047946212724	7.46111348047689	7.49081019374512	7.23501282672813	-0.0518243270563755	0.781523390570683	0.914926993310043
Merged-chr19-4042317-4	chr19	4042229	4042429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181796)	promoter-TSS (NM_181796)	-108.0	NM_181796	14869.0	Mm.441542	NM_181796	ENSMUSG00000038155	Gstp2	GSTpiA|Gst-3|Gst3	glutathione S-transferase, pi 2	protein-coding	6.6075873848953	6.57152988438275	6.72123824020292	6.29582624114681	6.04182727118901	6.28713630465311	5.91582508660863	6.39650938466398	-0.565735381534525	0.020578780961971	0.130504013728808
Merged-chr12-79642917-4	chr12	79642810	79643010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	281823.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	6.71707140575243	6.5640455543956	6.71825483361245	6.50565213398142	6.32010747438994	6.36405086111066	6.58243158106465	6.32266155783578	-0.323733683570125	0.133359296332754	0.406663040937973
Merged-chr13-101840027-4	chr13	101839943	101840143	+	892.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71826.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.446000708762	4.43535357478674	5.53470282997325	5.12010516705139	4.81150037823515	4.47654015284317	5.29807219943542	4.71501830832111	-0.21218956954407	0.637652189473772	0.846859692033839
Merged-chr1-39408864-4	chr1	39408767	39408967	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018775, intron 2 of 19)	intron (NM_018775, intron 2 of 19)	41016.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	5.31722599474731	4.95386051115922	5.2866931601579	5.96359157318529	5.52033645848357	5.3651300327852	5.5425457518179	5.4042914094843	0.000285592201927711	0.999342671580643	0.999693791219588
Merged-chr10-59324589-4	chr10	59324527	59324727	+	811.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	1331.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	3.17631721252208	3.43598781720075	3.30411355568507	3.40616064244008	3.32030552304025	3.35432683113501	3.56175273997052	3.71408642276073	0.523135188165531	0.319651248715647	0.631524558708573
Merged-chr8-126628826-4	chr8	126628750	126628950	+	933.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35414.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.25658022756113	5.13586498713444	4.941805310579	5.59390466169504	4.71629269865068	4.79905824234803	4.84489578037091	4.61490336250018	-1.04312824077658	0.00248677441825636	0.0276442474335577
Merged-chr5-93264840-4	chr5	93264779	93264979	+	919.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2694.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	4.75617503287306	5.48567433060736	4.63201529444009	4.25911642404003	5.39156266151061	5.01006155721625	4.61057739438531	4.67193397363822	0.191879989904319	0.669318561566087	0.863479905771059
Merged-chr16-50397103-3	chr16	50396998	50397198	+	765.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	MER5A|DNA|hAT-Charlie	35291.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	3.30404720518819	3.33443305687378	3.46674005661596	3.35503794757852	3.35622866611378	3.29431709518733	3.10949791790454	3.41298551919325	-0.233599105502388	0.658183691380772	0.857706321445165
Merged-chr7-140115772-4	chr7	140115654	140115854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053119, intron 1 of 7)	intron (NM_053119, intron 1 of 7)	669.0	NM_053119	93747.0	Mm.24452	NM_053119	ENSMUSG00000025465	Echs1	C80529	enoyl Coenzyme A hydratase, short chain, 1, mitochondrial	protein-coding	6.5797699808301	6.19494622413098	6.62526608428281	6.37115341177378	6.3094637859779	6.37347231408507	6.42132720645526	6.01732759086897	-0.232221470776893	0.325986757608573	0.63752464702773
Merged-chr4-155812974-2	chr4	155812880	155813080	+	947.833374	f0_balb.idr|f0_c57.idr	intron (NM_207678, intron 1 of 10)	CpG	491.0	NM_207678	56036.0	Mm.23492	NM_018856	ENSMUSG00000029068	Ccnl2	1700010A01Rik|1810019L15Rik|2010319M22Rik|AA409936|AW261738|Ania-6b|HCLA-150|Pcee|SB138	cyclin L2	protein-coding	4.46782102088454	4.51213410005967	4.09243778402196	4.06095348039222	4.60557264034673	4.51392699648741	4.5261428036211	4.50575005873042	0.589734184370204	0.1271969202487	0.396763643734704
Merged-chr7-45451483-4	chr7	45451370	45451570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 12 of 15)	intron (NM_030678, intron 12 of 15)	8416.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	6.18747965991659	6.51624544366127	5.85887464998093	6.42435000738663	6.39465039807074	6.67528759988676	6.4826870941086	6.6477321816365	0.390615809772494	0.112487508886109	0.370837311611523
Merged-chr17-24708836-4	chr17	24708761	24708961	+	881.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1208.0	NM_145396	213773.0	Mm.100353	NM_145396	ENSMUSG00000040688	Tbl3	9430070M15Rik	transducin (beta)-like 3	protein-coding	4.15707270281094	4.19458845542708	3.81855280314133	3.4909823130142	4.91668372795572	4.56136935037663	4.44672212449576	4.57840512633119	1.73504863312468	9.06015287216575e-05	0.00186871231900286
Merged-chr15-99772528-4	chr15	99772480	99772680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028015)	promoter-TSS (NM_028015)	-65.0	NM_028015	71949.0	Mm.390821	NM_028015	ENSMUSG00000023021	Cers5	2310081H14Rik|AU045339|AW544927|Lass5|Trh4	ceramide synthase 5	protein-coding	5.68229892772044	5.91471437178071	5.35082854978547	5.65360690854017	5.3136256740824	5.58880028799013	5.60508839452196	5.37837318845842	-0.340310460145981	0.232871246237195	0.542464407511367
Merged-chr1-39001327-3	chr1	39001231	39001431	+	763.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13517.0	NM_026850	68833.0	Mm.28121	NM_026850	ENSMUSG00000026078	Pdcl3	1110061A19Rik|C80025|Viaf1	phosducin-like 3	protein-coding	3.15986590869882	3.37487357077247	3.22513845481397	3.41271417147139	3.39501773178066	3.516740736431	3.54351630841814	3.45496823633458	0.579675997694861	0.26354676481684	0.575605865998708
Merged-chr8-71709859-3	chr8	71709814	71710014	+	883.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028267, intron 24 of 26)	intron (NR_028267, intron 24 of 26)	-8114.0	NM_028189	72297.0	Mm.290837	NM_028189	ENSMUSG00000031803	B3gnt3	2210008L19Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding	3.3468643249369	3.42154697426693	3.0874879593487	3.00613482648135	3.5094547289598	3.57751388112971	3.64385349612433	3.51140910500897	1.20609747010996	0.0227243383105807	0.139269584284961
Merged-chr6-146633801-3	chr6	146633717	146633917	+	755.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026281, intron 1 of 11)	intron (NM_026281, intron 1 of 11)	775.0	NM_026281	67623.0	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	3.39006183316259	3.47461867663292	3.56023572378094	3.5276553709143	3.43041660879554	3.72940443107115	3.59722774550151	3.50417141257167	0.23504443355651	0.63117981040124	0.843275262012373
Merged-chr3-95315758-1	chr3	95315658	95315858	+	1000.0	f0_balb.idr	intron (NM_029789, intron 1 of 10)	intron (NM_029789, intron 1 of 10)	568.0	NM_029789	76893.0	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	4.74367034568008	5.36305806915108	4.90067507712935	4.69893013403238	4.94012784987072	5.0010724781792	5.10977457751498	5.06905320070467	0.157039675337151	0.649356464786975	0.85269354452399
Merged-chr2-50984014-4	chr2	50983913	50984113	+	638.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74329.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	3.83232004013552	3.78823726210079	3.83283597096612	4.23182395587936	4.04661591944542	4.20448677825187	4.01746801823375	4.03244690229159	0.316244139840896	0.481911352261199	0.756900376058604
Merged-chr9-90259535-3	chr9	90259440	90259640	+	703.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	11229.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	3.33741444625723	2.86042929602992	3.0853366248182	2.56523625249226	2.65225752402179	2.73239910592774	2.69106321326792	3.19044708540848	-0.673061280798976	0.347222277059086	0.65535995064671
Merged-chr9-116160293-4	chr9	116160243	116160443	+	932.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	15020.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	4.49946558047314	4.15781435104748	4.19969143202675	4.73424073463749	4.28386246283699	4.27655869631186	3.9751429214931	4.53482751132201	-0.360489038493735	0.401675792938848	0.699204172692155
Merged-chr9-86477034-4	chr9	86476931	86477131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177208, intron 1 of 38)	L1MB2|LINE|L1	9877.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	5.09191397709675	5.14748403281078	5.42556481131743	5.58027464008257	5.062722831413	4.67925336504518	5.39816834191701	5.36745542521227	-0.331046892522467	0.333228014765637	0.644043577251094
Merged-chr13-46907249-4	chr13	46907145	46907345	+	815.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010617, intron 2 of 37)	intron (NM_010617, intron 2 of 37)	22473.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	3.94981652355581	4.00667752130007	3.9503498522997	4.04701705629197	4.80797161005435	4.9819434715313	4.69164014802197	4.60585067817517	1.80180473763423	3.15134066663904e-06	9.8640843144547e-05
Merged-chr13-36557525-3	chr13	36557422	36557622	+	904.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	176955.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	3.61601317212549	3.95072429107446	4.09382075325003	3.75018287944793	3.58130092699394	3.47824692453122	3.86056997338035	3.77711297036991	-0.535343424702319	0.271490032400361	0.583222139604812
Merged-chr1-51494069-4	chr1	51493970	51494170	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15671.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	5.89267280717729	5.59211164611597	6.23661721648026	6.38294853169616	5.4918504502731	5.60103699979534	5.45556146177131	5.17436102918868	-1.045579497341	0.000605876674566987	0.00900891911823764
Merged-chr5-112355673-4	chr5	112355580	112355780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039228, exon 1 of 1)	exon (NM_001039228, exon 1 of 1)	353.0	NM_001039228	625424.0	Mm.389677	NM_001039228	ENSMUSG00000051503	Gm6583	EG625424	predicted gene 6583	protein-coding	5.84952917388342	5.08297132061314	6.1148552030268	6.11086809118001	5.74737437399649	5.47261004134941	5.57281962639001	5.912459081268	-0.274432801488427	0.407550771807868	0.70380769632612
Merged-chr5-123136604-4	chr5	123136518	123136718	+	976.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3989.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	4.89122544518697	5.26851995593391	5.13229954715775	4.73230332124293	5.07939951059156	4.86796519002467	5.10698832520952	5.18972462843441	0.113209103467984	0.732959336762904	0.894278486628958
Merged-chr6-42352115-4	chr6	42352074	42352274	+	936.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289618, intron 4 of 9)	intron (NM_001289618, intron 4 of 9)	2346.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	4.32436714613353	4.06537063254566	4.14437796442736	4.25186955414896	4.09023514256275	4.16817332418182	4.3860285398869	4.5166939297626	0.229878945789883	0.567878912258003	0.808351591137394
Merged-chr6-134218062-3	chr6	134217971	134218171	+	704.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	-178258.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	3.66452144160109	3.18600329314947	3.27496637318784	3.88651452989945	3.6294744351845	3.56907417279697	3.44333966835675	3.61397029241262	0.0509266724388026	0.928365571937857	0.973969592850704
Merged-chr2-154187717-3	chr2	154187650	154187850	+	871.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3068.0	NM_001012392	228801.0	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	3.6332295493586	3.52786851377487	3.48310989207999	3.40767535622729	3.15630493754401	3.42575074029379	3.35920018518758	3.37001568290834	-0.654885711592517	0.209192899259768	0.513577117801228
Merged-chr8-72272942-3	chr8	72272853	72273053	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32935.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	4.66189309557092	5.30459579822782	4.66268127419832	4.47347906686409	3.93669294290381	4.36072562133402	4.21134593175833	4.17494313531458	-1.49110058141934	0.000595283508349858	0.00887922984929475
Merged-chr18-69592583-4	chr18	69592484	69592684	+	881.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	246424.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	4.40477326962373	4.29752043655141	4.96323874541241	4.13781278408636	4.36659067231586	4.53633903073053	4.50930037218594	4.3581715054884	-0.0774289131783768	0.852734446737219	0.944638235507649
Merged-chr11-117810699-5	chr11	117810652	117810852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009304, intron 1 of 3)	intron (NM_009304, intron 1 of 3)	1085.0	NM_009304	20973.0	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	4.93083281140384	4.92935494525864	5.31062578296001	4.59391876707928	5.20021067132482	5.10726578278518	5.04611455131054	5.19288293435776	0.376676563438045	0.264633935998926	0.576566406596513
Merged-chr11-51763674-4	chr11	51763557	51763757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025535)	promoter-TSS (NM_025535)	-6.0	NM_025535	66397.0	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	5.81930144167286	5.91119917196024	5.52685557178675	5.55844207990859	6.24539197332358	6.01892123437899	6.00754696564345	5.55259761639177	0.453257379198061	0.105655952795921	0.357953824607118
Merged-chr2-45246791-4	chr2	45246676	45246876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129334.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.0018414544341	6.73282922202135	7.45532719486955	7.29200550776808	6.85601268922021	6.68788055066504	6.76733815908501	6.9215253523938	-0.471288021132029	0.0382496892817722	0.19602380541344
Merged-chr3-89960635-4	chr3	89960537	89960737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081182, intron 2 of 27)	CpG	2695.0	NM_001081182	54667.0	Mm.30455	NM_001081182	ENSMUSG00000060671	Atp8b2	Id	ATPase, class I, type 8B, member 2	protein-coding	6.54683108594377	6.1882450077862	5.87023543407156	6.50887879226221	6.95996993839348	6.78878916288911	7.15337944345839	6.72636887526497	0.862984591751125	0.000489673317201861	0.00760018688292876
Merged-chr16-93606804-4	chr16	93606691	93606891	+	936.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1046.0	NM_007620	12408.0	Mm.26940	NM_007620	ENSMUSG00000051483	Cbr1	AW261796|CR|Cbr	carbonyl reductase 1	protein-coding	4.19856898769252	4.28231652725668	3.89709260680689	4.20782335273748	4.47458964065092	4.0189517299523	4.22439184987532	4.15098845567262	0.199369564540652	0.633723902765731	0.844842554595481
Merged-chr4-149520240-4	chr4	149520119	149520319	+	901.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023465, intron 1 of 4)	intron (NM_023465, intron 1 of 4)	1978.0	NM_023465	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	4.33096955575351	4.56115003304677	4.23179627763273	4.76351527054453	4.44499854486702	4.8017425974973	4.78489601091689	4.50816824745781	0.284057429798039	0.468194597408831	0.747560138025118
Merged-chr8-25215955-2	chr8	25215855	25216055	+	834.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-14413.0	NM_177089	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	3.21917676709116	3.22663188440013	3.50669310625643	3.09637504756943	3.60341453546131	3.39589977148596	3.44006612539385	3.55502097217091	0.863569066765594	0.0979116428825839	0.342856930621314
Merged-chr2-148530679-4	chr2	148530593	148530793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87158.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	7.45603160287669	6.88343973626143	8.12456319679078	8.00870219105668	6.80888287524395	7.06460934862933	7.61874531795046	6.95186568706391	-0.747725513039406	0.0121908755138718	0.0909098300892492
Merged-chr7-135736543-4	chr7	135736432	135736632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20153.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	5.77783831908317	5.59283945578678	5.28989302679514	5.48265358160685	6.05333598787574	5.82926456433503	5.6760755940693	6.12625604755922	0.649394043387381	0.0170340623659996	0.114784391285571
Merged-chr6-113046221-4	chr6	113046132	113046332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355266)	promoter-TSS (NM_001355266)	-70.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	8.42540725195692	8.59538688570374	8.36385749414489	8.20886641242834	8.47302044760529	8.42316586302301	8.23036249882313	8.35840710681217	-0.0318417059129041	0.847288199909313	0.942256492170064
Merged-chr10-43846384-4	chr10	43846276	43846476	+	741.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20469.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	3.76013736260246	3.62162163586894	3.81244261986464	3.68953661960221	4.19746645400583	3.70909054141492	3.79668687368572	3.90775759436117	0.60278494247972	0.188808285801899	0.487633707369135
Merged-chr8-91425592-4	chr8	91425491	91425691	+	870.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011936, intron 3 of 8)	MTD|LTR|ERVL-MaLR	112066.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	4.47380828511513	4.76821904038395	4.68592270115836	4.91919268972512	4.91328011714845	4.45866681820479	4.80983521318269	4.72123646172201	0.0177618901712965	0.960720785952333	0.986018439623899
Merged-chr5-74792482-3	chr5	74792385	74792585	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89582.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	6.0422145167746	5.62135492622741	6.3435033608388	6.09594351639073	3.84322020460078	4.20845904624586	4.30792555007846	4.44148116550584	-3.98598360885125	1.94196731128542e-20	6.92092846774803e-18
Merged-chr15-97925019-4	chr15	97924940	97925140	+	969.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16744.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	4.50303703141251	4.53077042176412	4.36705428256063	4.59029309632898	4.9794210875494	4.28786207732731	4.81986425978446	4.84022810320639	0.557780456228787	0.136220438400133	0.410674897583299
Merged-chr16-43106444-3	chr16	43106342	43106542	+	730.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285805, intron 2 of 10)	MLT2B4|LTR|ERVL	-140842.0	NM_181058	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	3.95482501737364	3.38197471674488	3.86708538898544	3.8571489866922	3.55896694565846	3.26842905335963	3.60063734334383	3.95289177945602	-0.500309688505252	0.355934880854124	0.662610987347058
Merged-chr1-43554522-3	chr1	43554430	43554630	+	971.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010879, exon 4 of 5)	exon (NM_010879, exon 4 of 5)	108779.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	4.45037092897903	4.32541749799443	4.37225248605911	4.52986059478002	4.17024709610098	3.81430282138032	4.03355979667364	4.3281418787191	-0.798727351473763	0.0535882555653969	0.241629193138818
Merged-chr6-142756664-4	chr6	142756539	142756739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009908)	promoter-TSS (NM_009908)	-47.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	7.09762117100438	6.78918657433593	6.63178346615279	6.93918537011197	7.06700454887713	6.82638217960438	7.27291796822263	7.10527159352398	0.277847427340384	0.186742575530047	0.484806817100395
Merged-chr12-79618119-4	chr12	79618011	79618211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	306622.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	4.98230666615511	4.75383590194321	4.67956451917028	4.83335138580493	4.77676490968932	4.64921201507457	4.2626602300826	4.17047575161651	-0.680990148289017	0.0793631137577209	0.304987964267402
Merged-chr2-39004588-4	chr2	39004517	39004717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025592, intron 2 of 3)	intron (NM_025592, intron 2 of 3)	514.0	NM_025592	66489.0	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	4.81271830759526	5.40883113157668	5.27495170501951	4.84397454405301	5.64064890474387	5.22360218776554	5.33437474770806	5.04357704668238	0.43450367492662	0.203010049997125	0.505600152160438
Merged-chr1-86587145-4	chr1	86587075	86587275	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172974, exon 2 of 8)	5' UTR (NM_172974, exon 2 of 8)	4254.0	NM_001360887	26895.0	Mm.12973	NM_172974	ENSMUSG00000026240	Cops7b	D1Wsu66e|E130114M23	COP9 signalosome subunit 7B	protein-coding	3.96088399475161	4.34602146770341	4.14976730330195	3.94438893862024	4.35472098636012	3.52203536483691	3.94499745513515	4.0566016798252	-0.245569590324955	0.618005260380079	0.835822295464892
Merged-chr3-61306712-4	chr3	61306608	61306808	+	842.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57799.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	4.14098120403819	4.07659677694604	3.91202445216896	4.12132357802303	4.06805506613539	3.87057327672775	3.7924868272025	3.69152519934246	-0.539396732034342	0.224940796961466	0.53334646858495
Merged-chr15-31615615-4	chr15	31615493	31615693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356313, intron 5 of 5)	intron (NM_001356313, intron 5 of 5)	13477.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	5.54880569111612	5.26622543567283	5.57493351036943	5.47067552708284	5.31500087189784	5.20097878417525	5.59516224173	5.01812015823503	-0.294730765372345	0.325495092918003	0.637069259899309
Merged-chr14-25773896-4	chr14	25773778	25773978	+	771.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5022.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	4.28881931562526	4.17416933923113	3.87207457131654	3.97660267732598	4.15050506353904	3.75213253377838	4.00974231658532	4.24662033211568	-0.0649557101537446	0.882800778299339	0.955814918609989
Merged-chr6-113302438-4	chr6	113302345	113302545	+	906.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170673, intron 19 of 19)	intron (NM_170673, intron 19 of 19)	-4692.0	NM_030178	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	4.28273812945435	4.59914267054787	3.92376974780948	4.36305994822986	4.60386752940914	4.26675521419028	4.30816545964371	4.18776734928284	0.0964669385197137	0.819020049786149	0.930681321455107
Merged-chr7-35754489-4	chr7	35754374	35754574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178704)	promoter-TSS (NM_178704)	-20.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	6.91603689844023	6.87409521641472	7.28022439682927	7.04412884118948	6.76428329874399	6.96988343481126	6.9335815442289	6.68196988487952	-0.276150543952021	0.179519987774693	0.475749514329241
Merged-chr12-86082543-4	chr12	86082454	86082654	+	965.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199843)	promoter-TSS (NM_001199843)	-7.0	NM_029601	76411.0	Mm.292345	NM_029601	ENSMUSG00000007867	Ift43	1700019E19Rik|R75064	intraflagellar transport 43	protein-coding	4.80938095711131	4.76232692564677	4.73222516463223	4.89258177586039	5.15069147011922	5.05608595856329	4.96213195875549	4.646343534339	0.334030230034706	0.316000335893237	0.62783028667765
Merged-chr9-65579101-4	chr9	65578982	65579182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 1 of 5)	MIR3|SINE|MIR	1005.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	7.7905848566396	7.76699353699316	7.95696072214804	7.91369648283492	7.57687165130317	7.40842500913288	8.04604353252421	7.57842449109396	-0.241467812539799	0.217123965050523	0.523940289125375
Merged-chr6-46961494-4	chr6	46961413	46961613	+	835.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 15 of 23)	intron (NM_001004357, intron 15 of 23)	-282883.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	3.66732708568126	3.54134772054355	3.77771310377346	3.8865519556627	4.03636317039223	3.94956740936165	3.90984265875693	3.92446108526078	0.627807268721844	0.165248952463931	0.45584835823083
Merged-chr17-28408042-4	chr17	28407933	28408133	+	980.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 8 of 10)	intron (NM_010220, intron 8 of 10)	-42817.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	5.12718315834363	5.21352169247367	4.93015702763381	5.33040948544607	4.95114472431053	4.48950069991413	4.71618917714286	4.96201433967307	-0.721468598862989	0.0343273492747295	0.183093772501009
Merged-chr12-99956598-4	chr12	99956498	99956698	+	879.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7901.0	NM_001164426	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	4.71483794413305	4.53786830361757	4.56771311524612	4.83337980676857	4.42364120066601	4.1084184151255	4.38075381506194	4.52494211966657	-0.693172319952266	0.0666771272417164	0.275280184974339
Merged-chr11-82016620-4	chr11	82016514	82016714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18963.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	7.08851447338955	7.45129536100182	6.80746556176469	6.58331883391936	6.8037438185573	7.01304652859113	6.98336703548186	6.743753897215	-0.18025917041271	0.467950353803325	0.747240341746873
Merged-chr13-89543196-4	chr13	89543106	89543306	+	830.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013500, intron 1 of 4)	intron (NM_013500, intron 1 of 4)	2570.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	3.92146829701951	4.22211279120004	3.61654563017547	4.27683203231058	4.25999817959312	4.09896806649607	4.31919306442931	4.37551977829196	0.542148196358036	0.235377729857051	0.545408670462509
Merged-chr18-56989696-4	chr18	56989603	56989803	+	918.229126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14324.0	NM_029909	77422.0	Mm.256874	NM_029909	ENSMUSG00000024592	C330018D20Rik	AU018666	RIKEN cDNA C330018D20 gene	protein-coding	4.8981914548007	4.51998497060402	4.86642995127545	4.93585645722662	4.51868975294219	4.52159457607334	4.46361372334756	4.52457943345665	-0.68000880510324	0.0562214874525965	0.248280757872463
Merged-chr13-58068796-3	chr13	58068688	58068888	+	888.716675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 6 of 16)	intron (NM_001195075, intron 6 of 16)	33640.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	2.96241311498451	3.06131160703794	3.18725284655047	3.24615268007931	2.63329505458279	2.63684520821736	2.89030896010075	3.07825539602421	-1.36066627286135	0.0433228359131426	0.211726618311997
Merged-chr10-128369023-4	chr10	128368911	128369111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081040, exon 1 of 5)	5' UTR (NM_001081040, exon 1 of 5)	1026.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	7.04082023190023	7.49743114927435	7.0166610782515	7.32199692267744	7.18574992574162	7.23138631359899	7.37481569635633	7.18000937115164	-8.15969744031744e-05	0.999675481687559	0.99982999537768
Merged-chr8-26435567-4	chr8	26435466	26435666	+	914.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	277397.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	4.07979228239515	4.20318260837444	4.50437061668461	4.40898972284589	4.28652204754392	4.04298683619088	4.37099067174622	3.8603218011008	-0.375807544123696	0.378972027194998	0.68151006603453
Merged-chr5-140814610-4	chr5	140814505	140814705	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	RMER17C|LTR|ERVK	15826.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	5.23718740773822	4.85950180994631	4.88777950464117	5.31218175354749	5.04244691487024	4.53760727682426	4.90037073898715	4.84734327309337	-0.48392195736626	0.166265899308022	0.45739103711385
Merged-chr5-43031498-3	chr5	43031399	43031599	+	869.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-201964.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	3.62091045812476	3.53787922379849	4.19978138421751	3.94343104268898	3.39808028805194	3.42241015710556	4.02897285867988	3.37367632120986	-0.798893328854513	0.153183464723908	0.437643326466366
Merged-chr8-70606731-3	chr8	70606652	70606852	+	962.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133772, intron 1 of 16)	intron (NM_133772, intron 1 of 16)	1562.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	3.4120837441951	3.41849174815825	3.04181317640404	2.99784068080598	3.72081034677941	3.41430247699273	3.28770129423271	3.29838872448626	0.790476404279625	0.164027607179019	0.453939387690334
Merged-chr19-7341792-4	chr19	7341701	7341901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007928)	promoter-TSS (NM_007928)	59.0	NM_001080389	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	7.81801317462326	7.88101439360778	7.1952020667519	6.80104106953735	7.69439830012121	7.929847109642	7.43463241819301	7.49477088288075	0.208886295678616	0.4382235463699	0.726297851003868
Merged-chr2-73395675-4	chr2	73395574	73395774	+	733.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-9194.0	NM_001276444	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	4.05260489207812	3.80215375510251	3.59691642099718	3.63080317216078	3.8681519179428	3.51851953048915	3.90119951326619	4.21015087806602	0.346072442746302	0.479516609785582	0.755272349979596
Merged-chr16-38709366-3	chr16	38709289	38709489	+	921.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	3646.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	4.00482457327381	3.70996892552073	3.9099848982939	3.42167762463425	4.26603718142337	3.6269021281108	4.15733734200646	3.95616725447105	0.727763003048043	0.140156752101997	0.416213336303895
Merged-chr13-92678741-4	chr13	92678638	92678838	+	726.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172588, intron 2 of 11)	intron (NM_172588, intron 2 of 11)	67600.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	3.79160727801582	3.87910790074944	3.5803847380694	3.6427129312131	3.74637126481853	3.80878862153904	3.77608706554867	3.45845592838097	-0.0598834242842994	0.89960530758748	0.962670728678352
Merged-chr5-113907163-4	chr5	113907050	113907250	+	991.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 1 of 10)	MTC|LTR|ERVL-MaLR	1556.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	5.86896823214384	5.14110683138246	5.02338356661054	5.02645520361218	5.46862171481817	5.72832291581762	5.42105823235776	5.38785275373268	0.35464699274211	0.294042496867193	0.606445609773701
Merged-chr10-125272203-4	chr10	125272121	125272321	+	882.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 3 of 5)	intron (NM_001358496, intron 3 of 5)	36595.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	4.48318717032735	4.39912231753615	4.67192450154394	4.63697530060908	4.56454129900918	4.48480791897769	4.09379266045095	4.16077617446196	-0.472045383477692	0.231631836316763	0.541195462875407
Merged-chr7-25179810-3	chr7	25179721	25179921	+	871.988892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	24752.0	NR_045848	434147.0	Mm.59171	NM_001033781	ENSMUSG00000074274	D930028M14Rik	EG434147	RIKEN cDNA D930028M14 gene	ncRNA	3.59615572954027	3.80285381506938	3.65020669007039	3.78975576803959	3.78242783874209	3.59674622681369	3.40985367458158	3.59470329138177	-0.335538893903445	0.489953203627346	0.761966459176932
Merged-chr3-27192895-2	chr3	27192795	27192995	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	ORR1A2|LTR|ERVL-MaLR	9891.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	3.83185897543653	3.49308816796634	3.63115088287476	3.03552410021666	3.81894279342453	3.5753901290942	3.61617771358711	4.00353660955501	0.746895779767884	0.175001265486151	0.469690492792
Merged-chr6-72439567-4	chr6	72439434	72439634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145569)	promoter-TSS (NM_145569)	24.0	NM_145569	232087.0	Mm.29815	NM_145569	ENSMUSG00000053907	Mat2a	D630045P18Rik	methionine adenosyltransferase II, alpha	protein-coding	7.82875489759356	8.56827666298761	7.48269861029107	7.25370623515338	8.19743735167526	8.19754305211025	7.73003420224958	7.54564914878635	0.0771344082782494	0.857352067489305	0.946273938640331
Merged-chr10-96459377-4	chr10	96459282	96459482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157619.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	7.48528983160751	7.68642448399396	7.65919010789986	7.58848845548374	7.44343009400317	7.23888428382521	7.33361851268734	7.10668820754425	-0.418301177161869	0.0208303717427672	0.131561570660613
Merged-chr15-5243272-2	chr15	5243172	5243372	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008965, intron 1 of 2)	intron (NM_008965, intron 1 of 2)	915.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	3.29589314278096	3.07438766085456	3.10701296104724	3.1094144057576	3.43441957740262	3.52478632946776	3.54531696207981	3.45972686802125	1.23923217062719	0.0165889612081497	0.11265963837753
Merged-chr7-16222082-4	chr7	16221979	16222179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285931)	promoter-TSS (NM_001285931)	-47.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	7.5738670342989	7.86366092132624	7.32481564200358	7.2657005357454	7.96887314674233	7.93004959075541	8.00130281035805	7.83840083288845	0.540042273281594	0.0060315805871551	0.0544686468679412
Merged-chr1-9892756-2	chr1	9892672	9892872	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133220, intron 17 of 17)	B4|SINE|B4	-15866.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	3.31312823020414	3.25076801140659	3.31354918074293	3.72690991767022	3.33546365910421	3.23830196663829	3.1829921781162	3.36784683821141	-0.523547347367929	0.348573991057213	0.656292768402628
Merged-chr2-148532232-4	chr2	148532140	148532340	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88705.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	5.0087167546413	4.6223787026434	4.90669076015441	5.02324803903598	4.89619092177793	4.96991128926061	5.22219016476373	4.71135297073249	0.109706119447756	0.746475489500964	0.90014206765363
Merged-chr15-83097832-4	chr15	83097731	83097931	+	858.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2374.0	NM_023475	68607.0	Mm.30056	NM_023475	ENSMUSG00000058586	Serhl	0610008B10Rik|1110019M09Rik|AU019786	serine hydrolase-like	protein-coding	3.95603311645739	4.21067119599786	3.65591805373109	3.62120337672746	4.64227043932229	4.65149861423894	4.26883693957031	3.89926203858503	1.32053962984946	0.00545089714092908	0.0506289382030621
Merged-chr12-33138073-2	chr12	33137973	33138173	+	809.333313	f1_balb.idr|f1_c57bl6.idr	intron (NR_015602, intron 3 of 5)	ORR1B1|LTR|ERVL-MaLR	9513.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	3.32440135782125	3.28204088005598	3.03545339636565	2.80561187469252	3.19283098816098	3.27161752811185	3.08759654710522	3.09715320310474	0.173218929687277	0.770667250590462	0.910265273875382
Merged-chr16-33837483-3	chr16	33837403	33837603	+	959.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	7838.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	3.78586239390383	3.39588492840733	3.83482309186378	3.86531543549569	3.68739535681572	4.09292991261295	3.37459344901007	3.5704321840241	-0.0892628025945051	0.865202696767863	0.949535988663619
Merged-chr7-27553164-4	chr7	27553047	27553247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011116)	promoter-TSS (NM_011116)	71.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	7.25923686351316	6.84395215106431	6.75291778394501	7.18078981786853	6.53630778504008	6.75555670173062	6.99679192715793	6.86193615086689	-0.336743256601738	0.135595017963326	0.409916776175686
Merged-chr9-35570229-4	chr9	35570128	35570328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029762)	promoter-TSS (NM_029762)	-159.0	NM_029762	76832.0	Mm.482285	NM_029762	ENSMUSG00000050555	Hyls1	3010015K02Rik	HYLS1, centriolar and ciliogenesis associated	protein-coding	8.58288207419485	8.66151894072855	8.62572119164883	9.00981098461265	8.52883552401655	8.5477275102733	8.80931397449845	8.38115802757293	-0.204299138684211	0.251509468933003	0.56287087730158
Merged-chr12-35890884-4	chr12	35890770	35890970	+	913.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34751.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	4.74104247299091	4.15457530080908	4.57309808316416	4.35405902704316	4.21107571947057	4.32388452984162	4.17860336037323	4.09327975101088	-0.630438455817687	0.122336961233599	0.38758279092208
Merged-chr5-142935794-4	chr5	142935681	142935881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33B|LTR|ERVL	-24574.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	5.60512806070098	6.11142963774974	5.54507310890323	5.82203565708178	6.43358859638963	6.18824170933711	6.50368239811957	6.02941712898455	0.789551337413346	0.00310284233743503	0.0328119469226397
Merged-chr5-102074238-2	chr5	102074138	102074338	+	893.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4317.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.08952395259858	3.24927871619789	3.23217929058566	3.47245822421268	3.60416745425211	3.70602165490454	3.62238750147762	3.94306066899105	1.42993448837378	0.00931893966873728	0.0750523655443597
Merged-chr7-80207422-4	chr7	80207302	80207502	+	989.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	8961.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	5.18938991846461	5.39323748200486	6.33228966169596	6.0518374826545	5.41008223025001	5.05792608388211	5.44888034909047	5.18670674487876	-0.920112052601299	0.0110415260700789	0.0846719224458251
Merged-chr14-51140553-3	chr14	51140461	51140661	+	821.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6206.0	NM_011271	19752.0	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	4.27168903070007	4.01453295454282	4.19056873841967	4.33030660595144	3.67841855053599	3.91873973624864	3.89187678755458	3.95705600511622	-0.974579695124084	0.0253418961864423	0.149917788285803
Merged-chr16-49783546-4	chr16	49783475	49783675	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72079.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	5.22527796130212	5.29202020114123	5.06046565379171	5.62751572650321	5.252341509305	5.23618404287678	5.03616217528007	5.057068394701	-0.346260972375665	0.275048482665839	0.586860789798314
Merged-chr17-74430673-4	chr17	74430570	74430770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 8 of 8)	MLT1J|LTR|ERVL-MaLR	28438.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	5.58851633496621	5.55343231005841	5.89291549958884	5.95721182857798	5.33556141025938	5.40470133523439	5.36303346729021	5.53165753785027	-0.624268066070563	0.0254601514462742	0.150379895427296
Merged-chr3-104639044-3	chr3	104638955	104639155	+	971.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009196, intron 1 of 4)	CpG	391.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	4.52728231804188	4.29811330846471	4.87972537466274	4.59380996974171	4.42347936139254	4.38643730219204	4.38052683761925	4.60366670316759	-0.30915672605902	0.414677720149006	0.70914229032969
Merged-chr7-55847823-4	chr7	55847718	55847918	+	925.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 1 of 30)	intron (NM_011370, intron 1 of 30)	5747.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	3.87926870751206	4.24456670606003	4.03352365231835	4.20905422169443	4.11134524818478	4.00074600374071	4.19435624388178	3.87767972817341	-0.144232801281359	0.735286497735771	0.895484700651417
Merged-chr4-58288969-4	chr4	58288849	58289049	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037128, intron 1 of 14)	intron (NM_001037128, intron 1 of 14)	2987.0	NM_010944	18198.0	Mm.16148	NM_010944	ENSMUSG00000057280	Musk	Mdk4|Mlk|Nsk1|Nsk2|Nsk3	muscle, skeletal, receptor tyrosine kinase	protein-coding	6.14357042348457	5.74482844798278	6.42523642655371	5.9178989271928	4.77467463357211	4.51460394388988	4.77896782686743	4.84443459048892	-2.43692540891747	6.71410475577159e-13	7.36368663191165e-11
Merged-chr2-12085682-4	chr2	12085586	12085786	+	932.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-215560.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	4.45285233806751	4.18749867842907	4.58111680546969	4.98299935699005	4.70652643819115	4.441432184204	4.74595719762016	4.73037962330184	0.123699342996493	0.759808149364044	0.905842932790046
Merged-chr15-100762113-4	chr15	100762006	100762206	+	962.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021530, intron 1 of 24)	CpG	359.0	NM_021530	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	4.87310789000072	4.94903454786857	4.61674541207768	4.24378288469666	4.50103665818128	4.75065013827744	4.6349565545134	4.76681437329203	-0.0491856776752161	0.899095966839916	0.962393017588858
Merged-chr2-60113880-4	chr2	60113772	60113972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 1 of 35)	L1MA5A|LINE|L1	11868.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	6.71731307998522	7.0825115354472	6.24520342795626	6.66035057740753	6.76290308688868	6.67247864337713	6.69872570864502	6.68414959626016	-0.00968384142558787	0.967510025130137	0.988536511573071
Merged-chr6-86524972-2	chr6	86524872	86525072	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011865, exon 1 of 1)	exon (NM_011865, exon 1 of 1)	1217.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	3.25036596263694	2.9063636183401	3.65787216923268	2.91484654255808	3.30874159833671	3.42543781281604	3.23832837833874	3.36332285253343	0.435211259170096	0.47349750426103	0.751223284962802
Merged-chr1-177711197-4	chr1	177711102	177711302	+	977.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25B|LTR|ERVK	-18612.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	5.50798060192603	5.22525877088117	5.33050377974932	5.80446575725335	5.34150359480244	5.76403858067343	5.06123458361543	6.10907534682144	0.22054524625723	0.532016585973095	0.787792726559299
Merged-chr10-80161888-6	chr10	80161815	80162015	+	905.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-5924.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	3.90283656653018	4.3200113778444	4.17764495566511	3.93027836025997	3.6272028116572	3.73945883209723	4.02992241139268	3.84922224447953	-0.770179453578679	0.0953610105720079	0.337948786233754
Merged-chr5-148496176-4	chr5	148496062	148496262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55511.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	5.49351486808627	6.04860546197383	5.96198880276682	5.70698656065864	5.91539137741682	5.97604188703449	6.30236271688545	5.79575909446988	0.3065102734731	0.261349852864642	0.573262724622492
Merged-chr17-47842468-4	chr17	47842357	47842557	+	932.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7766.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	4.36859617512193	4.64058042307876	4.36925256835912	4.53217128889434	4.68821125234433	4.63147393490372	4.59855646525073	4.45567037785285	0.244632213203171	0.495656913349633	0.765874409085869
Merged-chr10-14055574-4	chr10	14055488	14055688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	89209.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	7.28208876252024	7.35723719355957	7.42915156510236	7.59908841984016	6.73151784106803	6.9919191338826	6.82293173267561	7.04062797096193	-0.733440395169769	0.000175853140085853	0.00326645372081704
Merged-chr1-156617420-3	chr1	156617317	156617517	+	649.155579	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	(GGAA)n|Simple_repeat|Simple_repeat	56922.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	3.10152662344638	3.31983826688429	2.96086669316133	3.25648323891049	3.50334907865308	3.34178530427337	3.43830421127401	3.54901479079513	1.01428935442764	0.0643800060790691	0.269619838175437
Merged-chr11-59534907-4	chr11	59534823	59535023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-6646.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	5.48209238751605	5.29717593255041	5.0310120558976	4.96738279861111	5.53429282656053	5.13320522298818	5.14279808077371	5.28858989817292	0.182956517950648	0.567376417048771	0.808229609203301
Merged-chr15-41639885-4	chr15	41639779	41639979	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	-149116.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	5.50169579237966	5.02550028844252	5.62983558151658	6.22556124893888	5.05546559432412	4.90612676715679	5.47464724079757	5.23203691028951	-0.878724009799817	0.0187481367560374	0.122608749187613
Merged-chr12-99647087-4	chr12	99646981	99647181	+	967.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR50A|LTR|ERVK	-19107.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	5.1744896744512	4.65230803592949	5.14060023649207	4.48748448659646	5.76495958315246	5.73356990778341	5.99033157362135	5.67597551795608	1.66609813623615	2.07866267742256e-07	8.35915992747232e-06
Merged-chr19-47408872-4	chr19	47408727	47408927	+	849.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 2 of 14)	intron (NM_008018, intron 2 of 14)	55584.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	4.07186499675711	3.69090737888782	4.07249793464536	3.90052905672373	3.87585929183486	3.84220585612163	4.01025774570481	3.88224511727955	-0.0927782130663604	0.833343461664609	0.936256874087684
Merged-chr19-32651244-4	chr19	32651131	32651331	+	960.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011864, intron 8 of 12)	intron (NM_011864, intron 8 of 12)	31226.0	NM_011864	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	4.56558369578053	4.37498905352657	5.03195284577973	5.04309493803274	4.75041545534263	4.29545018553099	4.91446105474948	4.8347603678359	-0.152434152497762	0.703442053923817	0.880697622926554
Merged-chr13-46735975-4	chr13	46735866	46736066	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8117.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	5.1938027885698	4.87402555951791	4.79755277986398	5.01668693070391	4.98175658716972	4.85253265494321	4.77514891587286	4.9058625907564	-0.188222221426992	0.562450928386846	0.805702122104067
Merged-chr6-26404061-3	chr6	26403973	26404173	+	798.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-int|LTR|ERVL	472647.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	4.15992363348134	4.14334199160329	4.06692341113559	4.64855419148677	3.91396302991884	4.0347704517797	3.84194933923484	4.15799206627968	-0.79574166811788	0.0760608322307575	0.297861684493458
Merged-chr2-153168339-4	chr2	153168235	153168435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	7034.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	6.27354664425967	6.07582194972049	6.6623299733284	6.0533207992085	6.21658448643899	6.21149667033856	5.95945447847464	5.73497973717579	-0.350396332827223	0.197030784913114	0.498363748243862
Merged-chr4-12140873-4	chr4	12140779	12140979	+	757.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028226, intron 1 of 2)	CpG	762.0	NM_028226	72397.0	Mm.430709	NM_028226	ENSMUSG00000046667	Rbm12b1	3000004N20Rik|Rbm12b|Rbm12ba	RNA binding motif protein 12 B1	protein-coding	3.62152268938365	3.68522087591976	4.10537519970636	3.54719956271651	3.55280646069718	3.68122841253907	3.82104840228982	4.18033218962021	0.224078539833626	0.657165163944899	0.857123881679102
Merged-chr14-67933269-4	chr14	67933151	67933351	+	929.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177780, intron 1 of 51)	CpG	321.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	4.64023870366032	4.79605200554346	4.64099137827016	4.53808201615108	4.55865461164307	4.42279565860281	4.54170194892571	4.4326630301618	-0.346766672554518	0.330821411927164	0.642094846510006
Merged-chr14-45667369-4	chr14	45667277	45667477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9234.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	8.10750168592881	8.69990481068213	8.4505923859011	8.47876400730703	8.6718300987949	8.57139040679836	8.3597862678388	8.24797099180914	0.0283476509366553	0.880351913957583	0.95517036814656
Merged-chr9-85327356-4	chr9	85327257	85327457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160378)	promoter-TSS (NM_001160378)	-207.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	7.85552506605317	7.99046396053544	7.8340555777945	7.79474856714554	8.10244870677206	8.18288953701733	8.07615270184635	7.86650465187305	0.251050306059359	0.128226696341334	0.398474045792615
Merged-chr12-52398087-4	chr12	52397984	52398184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82525.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	6.17377162364707	5.80190900714367	6.94240675708467	6.49516288305071	6.1670484090014	5.87707291919354	6.32766347166416	5.71993564580251	-0.564874305024039	0.0736573095463878	0.292391705870387
Merged-chr15-96328887-4	chr15	96328777	96328977	+	889.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175251, intron 3 of 20)	intron (NM_175251, intron 3 of 20)	41355.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	5.02500424920962	4.5670220128493	4.30308347597992	4.32734400290443	4.42057525229561	4.73850896002452	4.3315871715962	4.34809183674071	-0.251916020608125	0.53954187605397	0.792277168643276
Merged-chr14-34490117-4	chr14	34490021	34490221	+	782.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009758, intron 1 of 12)	intron (NM_009758, intron 1 of 12)	12425.0	NM_009758	12166.0	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK-3|ALK3|AU045487|BMPR-1A|BMPR-IA|Bmpr|SKR5	bone morphogenetic protein receptor, type 1A	protein-coding	4.09594471906307	3.7643993968688	3.63066591231038	3.35172863900104	3.81918643246286	3.96019699370154	3.5596812634681	3.44895620655077	-0.0525939874068641	0.921086073733017	0.970769099300258
Merged-chr3-61412736-4	chr3	61412710	61412910	+	709.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48303.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	3.52924025195076	3.25368361994998	3.20875380718909	3.340185465949	3.13390427356782	3.38066354699289	3.25600574631824	3.14505981730118	-0.406594238190531	0.45386205907302	0.73775257491056
Merged-chr8-25201665-4	chr8	25201575	25201775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177089)	promoter-TSS (NM_177089)	-133.0	NM_177089	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	8.09502687171144	8.42116494423755	8.05716613279877	8.11776186742962	8.23723427122911	8.25455131695672	8.20302261351475	7.87393048774535	-0.036999781718786	0.83526194481731	0.937285789387356
Merged-chr11-29707034-4	chr11	29706930	29707130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_194051, exon 3 of 9)	exon (NM_194051, exon 3 of 9)	-11533.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	5.94430894954142	6.13353729442241	5.98946081241911	6.41489162131935	5.78483005097687	5.64106513648073	5.91503503756797	5.941118695014	-0.519158700645126	0.0458139147113477	0.219559457968468
Merged-chr13-34345105-6	chr13	34344989	34345189	+	858.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033167)	promoter-TSS (NM_001033167)	93.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	4.4087290565243	4.25911169859174	4.488000822175	4.46112605103938	4.27372579990234	4.31458685404984	4.07192172014486	4.23336440552063	-0.440303068862547	0.254301913853848	0.565637196531453
Merged-chr10-21827628-4	chr10	21827530	21827730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54554.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	6.36581486091932	6.79066378016898	6.13499007350229	5.81665882034923	6.59142262272261	6.45179062558734	6.35167644210977	5.94868211732265	0.0609558709047681	0.837514078293395	0.938350615124281
Merged-chr7-65371203-1	chr7	65371103	65371303	+	729.0	f0_balb.idr	promoter-TSS (NM_001163574)	promoter-TSS (NM_001163574)	41.0	NM_001163574	21872.0	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	3.70805810898496	3.68704954370018	3.55445157709893	3.75210425278009	3.47591060826548	3.42751488885336	3.48584738566471	3.65726374979094	-0.551801054853916	0.255938653705526	0.567522038383354
Merged-chr1-52331575-4	chr1	52331462	52331662	+	838.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98330.0	NM_001113383	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	5.59226715122526	5.83913036222813	5.52035549730528	5.92239167843751	4.49961175590295	4.35360609116791	4.90162440784979	4.88196970841386	-2.02869288251754	2.80070035631231e-09	1.65711596560228e-07
Merged-chr2-35437962-1	chr2	35437862	35438062	+	657.666687	f0_balb.idr	intron (NM_010283, intron 1 of 8)	MIRb|SINE|MIR	23487.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	3.60967320771264	3.76484415339723	3.56021699579516	2.67544383516754	3.65786151548508	3.11240146918319	3.49301211138291	3.14261078499414	-0.361151781292724	0.603512890386343	0.82815361886668
Merged-chr11-103346860-4	chr11	103346764	103346964	+	981.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045346, exon 3 of 4)	non-coding (NR_045346, exon 3 of 4)	2111.0	NR_045346	653030.0	Mm.440684	NR_045346	ENSMUSG00000085887	Arhgap27os3	F830206d12rik|Gm11648	Rho GTPase activating protein 27, opposite strand 3	ncRNA	4.79272779467417	5.19803682338705	5.32519308266415	5.20781425585194	5.06465497222952	4.97135398625431	5.06220714731625	4.94530514525144	-0.261074530285897	0.410270980699434	0.705668466162555
Merged-chr10-128913419-4	chr10	128913335	128913535	+	830.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001282966)	TTS (NM_001282966)	3569.0	NM_007653	12512.0	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	4.06253100405381	4.15025908472532	4.01206362861765	4.31606912427924	4.27005396422348	4.33076997018662	4.18678747722885	4.20265796702989	0.2293896130301	0.568415274226407	0.808665348796528
Merged-chr11-45852668-4	chr11	45852550	45852750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045520, intron 1 of 11)	intron (NM_001045520, intron 1 of 11)	686.0	NM_001045520	216705.0	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	5.89550407689554	5.77155864267117	5.91813229412082	5.37676009923196	5.60456415321817	5.6666269116147	5.82234746013765	5.8480473281566	-0.00333026322151776	0.990536809704636	0.996288447351841
Merged-chr18-62092757-4	chr18	62092673	62092873	+	992.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87208.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	5.69145083308479	5.42389112109815	5.51952459226996	5.39396000863237	5.49599320017802	5.63899325806469	5.16317123702447	5.03989176675841	-0.25216923523275	0.404902435119196	0.701981450442061
Merged-chr1-156532213-4	chr1	156532115	156532315	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ETnERV-int|LTR|ERVK	-26572.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	4.96175116954819	5.19961610971474	4.7294122281185	5.14221296550444	5.26155397786983	5.10092211480811	4.93882055157626	4.88620003772264	0.0598029672089884	0.855865581387429	0.945782466107742
Merged-chr9-94691947-4	chr9	94691844	94692044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	22052.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	7.91930627149182	8.13894884518926	8.17968157555972	8.3527018288567	8.14855723115409	7.96609514421776	8.28227907023675	8.14392458499984	-0.0302149176440549	0.862057806962309	0.947936227886533
Merged-chr11-101171460-4	chr11	101171313	101171513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346769)	promoter-TSS (NM_001346769)	-41.0	NM_001346769	217198.0	Mm.273254	NM_146030	ENSMUSG00000035172	Plekhh3	BC020025	pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	protein-coding	7.62560570112686	7.50248429436222	7.48516033363245	7.2068117701371	7.66428933374761	7.55480174199435	7.46675338686451	7.57040724721136	0.155933505470754	0.399571760397265	0.697713297652764
Merged-chr10-37222030-4	chr10	37221934	37222134	+	915.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83108.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	4.46559315973012	4.53119840577672	4.2501675938653	4.07874294091978	4.56770264247931	4.55648694362852	4.52168722106992	3.73983911165389	0.125303975733857	0.783377509104861	0.915636043192861
Merged-chr13-42074614-4	chr13	42074556	42074756	+	769.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	22635.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	3.88385754107895	3.79420889063048	4.14682498725112	3.91654893218311	4.12368094993926	4.36742110202518	4.56282142563577	4.58250058057507	1.19418929842547	0.00420375058629903	0.0416797273968769
Merged-chr9-36797356-4	chr9	36797259	36797459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199494)	promoter-TSS (NM_001199494)	34.0	NM_001199494	13663.0	Mm.4337	NM_007915	ENSMUSG00000062762	Ei24	AA536736|AI115355|PIG8	etoposide induced 2.4 mRNA	protein-coding	7.05750762628035	6.70587041735754	7.01107376015016	6.9471892072127	6.80348767654006	6.65255610898472	7.14510870517006	6.94390777226106	-0.0510577968292397	0.809367194283548	0.926399566100386
Merged-chr12-73693565-4	chr12	73693472	73693672	+	982.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 4 of 13)	B3|SINE|B2	108776.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	5.36839845951337	5.6045705237555	4.79261167383527	5.13363060132099	5.17641070177347	5.5995958898236	5.55429542451652	5.44982034514583	0.339428663917691	0.301322432711274	0.613355909344422
Merged-chr10-57799667-4	chr10	57799570	57799770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020561, intron 1 of 7)	ORR1D2|LTR|ERVL-MaLR	5126.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	5.73169134050919	6.3649923851039	6.38186174812327	6.44643705393505	6.1349814528742	6.16497066512286	6.12888220773662	6.27151980633008	-0.150714514696958	0.556772935971557	0.802235069284239
Merged-chr2-174076271-4	chr2	174076205	174076405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172675)	promoter-TSS (NM_172675)	-746.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	7.1521749417008	7.2275346861449	6.91065851827107	7.25857321254585	7.16805568950085	7.41992024063035	7.50286734740719	7.29092886826802	0.261478104777983	0.178067480648515	0.473836973534737
Merged-chr3-121546147-4	chr3	121546063	121546263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13819.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	6.00020528071972	6.15501331487329	5.68759422629785	5.92594801762087	6.55849816599073	6.70032108236225	6.39726117049993	6.52107722022746	0.892997596995681	0.000127257991978863	0.00248371171128694
Merged-chr18-34380780-4	chr18	34380678	34380878	+	913.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7363.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	4.76133305104621	4.89003559018471	4.76211480029017	4.65059872101004	4.71456141169491	4.47324112766375	4.46474850444281	4.52493697121631	-0.444825117945477	0.207761727450017	0.511829637838142
Merged-chr17-16951475-4	chr17	16951384	16951584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112619.0	NM_001005358	449000.0	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	7.54265749385833	7.58337506439176	7.88181207877149	7.80108211985756	7.68746862233423	7.96947331546832	8.14881094141023	7.93981976601404	0.297639487153088	0.110816386092332	0.367761162528682
Merged-chr10-10476734-4	chr10	10476644	10476844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4430.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	6.23388634802339	5.97525443560327	6.49472313097824	6.49890036233471	6.32323584003477	6.26930778586435	6.29526683448874	5.87815790402807	-0.178107547154729	0.484143893999343	0.758281878074622
Merged-chr14-70776126-3	chr14	70776017	70776217	+	653.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010071, intron 3 of 4)	intron (NM_010071, intron 3 of 4)	1736.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	3.22913888573553	3.19770874780832	3.42990016060922	3.03869719552239	2.75665864275279	3.03520779883099	2.84694182796985	3.11450678296213	-1.20458792155611	0.0531845339554462	0.240528739396338
Merged-chr3-97761346-4	chr3	97761243	97761443	+	916.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 8 of 46)	intron (NM_001039376, intron 8 of 46)	6671.0	NM_178080	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	4.40964476367094	4.29043674357888	4.52328431417984	4.33635633359527	4.36543004853305	4.00396959772756	3.92421859121323	4.14619766539657	-0.62818692134403	0.129546974701195	0.400540095089772
Merged-chr18-84294309-4	chr18	84294180	84294380	+	755.895813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	206122.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	3.38476834848321	3.45656420574573	3.49588273947506	3.30757436690356	3.56660755437725	3.49897261495162	3.53309870359899	3.2627723366554	0.232724732372553	0.645584102186692	0.850934142345746
Merged-chr1-36922270-4	chr1	36922184	36922384	+	965.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 1 of 40)	intron (NM_018872, intron 1 of 40)	17243.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	5.16622886069394	5.16627500749342	4.55685951928702	4.84046661296663	4.87296411378597	4.73605860630323	4.78415042472095	4.84096549385428	-0.282762662533793	0.416911044139458	0.710744672757979
Merged-chr13-41249785-4	chr13	41249724	41249924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135577)	promoter-TSS (NM_001135577)	-20.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	7.55049533130082	7.57099843727373	7.41760501477038	7.426180831507	7.52358563165627	7.79113221166738	7.94684270010607	7.78566353370103	0.361194934873359	0.0448035173912847	0.21628142179683
Merged-chr2-167691106-2	chr2	167691006	167691206	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015500)	promoter-TSS (NR_015500)	-71.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	4.39444461605779	4.25511133590883	4.48174202218189	4.6385209076693	4.50310671855138	4.61243111409353	4.33055494234555	4.80828140876535	0.244897808044744	0.52032629547562	0.780730751415725
Merged-chr1-43916233-3	chr1	43916138	43916338	+	627.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-17756.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	3.15807814958594	3.46069416116301	3.60669634526242	3.29197405377506	3.36484482734589	3.45874560489987	3.38868738608057	3.34339776780359	0.0112888724572219	0.982836302233247	0.993865312500427
Merged-chr14-54757236-4	chr14	54757132	54757332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	24654.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	5.5633885142656	5.38761456718708	5.88875647913247	5.80171585380888	6.29402117057532	5.96825629235153	6.64456015016525	6.49677333021233	1.07936671847581	8.36160900116774e-05	0.00174741916351767
Merged-chr5-88770531-4	chr5	88770506	88770706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007832, intron 2 of 6)	MTC|LTR|ERVL-MaLR	5593.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	5.01631915303711	5.03768936615405	5.18801889475165	4.93753658791937	5.36973371324189	5.51080309072852	5.31191042087773	5.30622376971342	0.626440470780255	0.0309203407548658	0.170756376335681
Merged-chr10-80678825-4	chr10	80678778	80678978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2585.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	4.24784602935057	4.43671416562577	4.04800633781957	4.43366981261075	4.26222652822063	4.46616821801951	4.36094423892274	4.41919383385604	0.14211219111544	0.716054495474478	0.886371813543908
Merged-chr5-66076943-4	chr5	66076926	66077126	+	818.59375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	21153.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	2.82011247564412	2.78787017166971	2.94493309270168	2.56340137730986	2.86574895059128	2.92913587715094	3.04553615070229	2.94334507045237	0.778333338780587	0.209620862711093	0.514148979562816
Merged-chr14-69707542-4	chr14	69707443	69707643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301652)	promoter-TSS (NM_001301652)	41.0	NM_001146012	71843.0	Mm.27738	NM_001146012	ENSMUSG00000034194	R3hcc1	1700020M16Rik|AA407796	R3H domain and coiled-coil containing 1	protein-coding	6.25301161152826	6.60051907935004	6.23421471706037	6.58155865537099	6.32461353949762	6.54330173673415	6.50266360313817	6.24965026557211	-0.0540961188576222	0.815009529862366	0.928675353803982
Merged-chr11-32642440-4	chr11	32642347	32642547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271349)	promoter-TSS (NM_001271349)	-108.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	7.43059146619652	7.62326961996213	7.04356198513154	7.44022212366453	7.71716606920831	7.55921120626771	7.69788270282272	7.69915321989872	0.350921780775917	0.0655787547608893	0.272637707209003
Merged-chr1-194985999-4	chr1	194985901	194986101	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-9042.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	5.47546916332491	5.22242636273802	5.2615002114988	5.25579292538558	5.00933179568833	5.21015436314427	4.93991977866476	4.99633141658508	-0.498221358432611	0.0982505470102909	0.343671712892304
Merged-chr19-57393576-4	chr19	57393474	57393674	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	32565.0	NM_145505	226252.0	Mm.358870	NM_145505	ENSMUSG00000033478	Fam160b1	AI450540|mKIAA1600	family with sequence similarity 160, member B1	protein-coding	4.41074273885555	4.1069253329719	4.63567921079155	4.68466546028238	4.15447158318406	3.78191086827483	4.26337843134343	4.48776040458126	-0.689045588152998	0.121440841307422	0.385980694057647
Merged-chr11-106752332-4	chr11	106752233	106752433	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033435, intron 2 of 6)	intron (NM_001033435, intron 2 of 6)	1107.0	NM_001033435	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	5.55702844217266	5.50716268999118	5.80222639272841	5.99469538012651	5.63882812296946	5.36489109992752	5.38861619928622	5.28525947325131	-0.525623290450509	0.0723892754490811	0.28913058959599
Merged-chr18-43492985-4	chr18	43492885	43493085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-54699.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	4.13840660228196	4.49202292341695	4.62899995157844	4.66146307761626	4.64497224325827	4.55892734032048	4.67824986555742	4.08166952001307	0.0250796264260526	0.950874776631448	0.982479120066335
Merged-chr3-57847294-9	chr3	57847163	57847363	+	958.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019410, intron 1 of 2)	CpG	494.0	NM_019410	18645.0	Mm.271744	NM_019410	ENSMUSG00000027805	Pfn2	Pfn	profilin 2	protein-coding	3.91049312184468	4.31117252137853	4.29090048157136	4.04141250977035	3.91218463924165	4.4995070697504	4.09689398219994	3.90885959043586	-0.065459527362396	0.883015655473748	0.955912021732991
Merged-chr2-90612368-4	chr2	90612262	90612462	+	921.462524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31715.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.11707832153452	4.33827676808439	4.49380099024227	4.3416728251252	4.32472030839076	4.74347408105172	4.55131286149738	4.71447371298265	0.579956982011715	0.127680544663858	0.397568009677132
Merged-chr9-40318321-4	chr9	40318218	40318418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	3005.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	5.08324847433729	5.17998079673879	5.45848861997404	5.57809148227315	5.47788557877802	5.39669463211029	5.28933575544559	5.31194640937353	0.0301797488668235	0.920098100326736	0.970409558278764
Merged-chr8-15043027-4	chr8	15042944	15043144	+	774.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037972, exon 2 of 2)	non-coding (NR_037972, exon 2 of 2)	3034.0	NR_037972	434285.0	Mm.334425	NM_001007591	ENSMUSG00000049008	BB014433	-	expressed sequence BB014433	ncRNA	3.87818129799244	3.35395367856965	3.73974125438914	3.62964964105087	3.67201653751968	3.45533269975517	3.7712965195203	3.58159732133053	-0.0976220314224451	0.844967373735214	0.941263794780644
Merged-chr2-75704629-4	chr2	75704541	75704741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010902)	promoter-TSS (NM_010902)	22.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	8.88481042112756	9.01944390900847	9.09050761799865	9.04866317704457	9.28558421200847	9.33741904215592	9.46405045230347	9.26621260019007	0.401937010332574	0.00431303022721416	0.0425203848397336
Merged-chr15-8463029-4	chr15	8462932	8463132	+	903.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18569.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	4.43867254522711	4.73856712808477	4.96224289185496	4.95140901885326	4.62393566051139	4.88227533592669	5.12036308353432	4.92542502248718	0.188969110592188	0.598109700930426	0.825700950899405
Merged-chr17-64602899-4	chr17	64602800	64603000	+	898.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	1251.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	4.47976308344318	4.39621602909062	4.39700834839889	4.68092282351073	4.50443813061143	4.23371501781903	4.24253262267445	4.51730064489325	-0.274075686452355	0.474168087763462	0.751607118426792
Merged-chr11-79254725-4	chr11	79254617	79254817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019653)	promoter-TSS (NM_019653)	-22.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	6.68104443827639	7.42887404739072	6.2122805328177	6.39665804752517	7.25744519726988	7.35816283086062	6.6635595653522	6.95808954413704	0.439790135158885	0.153003312292577	0.437532552556077
Merged-chr10-18056102-3	chr10	18055997	18056197	+	891.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001111065, exon 1 of 19)	exon (NM_001111065, exon 1 of 19)	157.0	NM_001111065	19707.0	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	4.23448243470831	4.06468622900487	4.52695047931029	4.48272366032191	4.10185213199391	4.58033810032316	4.06978266327533	4.44728431838269	-0.084323178847948	0.840843507527844	0.939428850539057
Merged-chr13-107784181-3	chr13	107784086	107784286	+	775.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 3 of 14)	intron (NM_145456, intron 3 of 14)	96789.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	3.29709489818004	3.13057606067142	3.40367373006661	3.48018103904632	3.10959845771488	3.09466700953216	3.38941808155545	3.05342454790045	-0.650584264113759	0.250954654381739	0.562197505562515
Merged-chr14-30137118-4	chr14	30137019	30137219	+	955.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 9 of 46)	intron (NM_001083616, intron 9 of 46)	114486.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	4.79154886364027	4.67530544310326	5.0210802443915	4.77262285432835	4.62734963172294	4.34342667315965	4.83849864287502	4.59616256207298	-0.424466932882202	0.233820491547851	0.543501690545507
Merged-chr1-131473981-4	chr1	131473882	131474082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	53379.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	6.48814828593906	6.45155466904977	6.18604112950403	5.78957586135936	6.33233795381622	6.45876578069418	6.19385426288163	6.29710233013973	0.123218403528817	0.638190520573529	0.847061371191777
Merged-chr16-78376882-4	chr16	78376787	78376987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009770)	promoter-TSS (NM_009770)	-77.0	NM_009770	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	8.5164848508202	8.53614447866758	8.68623436172946	8.57091371935926	8.56127514796713	8.43633202534179	8.74449863481209	8.38440328527563	-0.0475057435530833	0.763309381791496	0.90713960302321
Merged-chr13-47217470-4	chr13	47217359	47217559	+	967.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	23456.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	5.68339675717665	5.68657335061357	5.58815656625049	5.84398813787307	5.08341928832724	5.28658645151975	4.92962254184579	5.1038351326211	-1.09172655408432	0.000146967897256197	0.0028045651364072
Merged-chr12-8437603-2	chr12	8437526	8437726	+	800.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62383.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	3.20740592827789	3.3710119521657	3.47325792578708	2.96115466235558	3.0403675905013	2.98407444626421	3.2525700611504	3.3187986425526	-0.401259688276172	0.497707292697735	0.767160446248674
Merged-chr4-88867580-4	chr4	88867499	88867699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12602.0	NM_177348	230405.0	Mm.246593	NM_177348	ENSMUSG00000045364	Ifne	Ifn-tau-1|Ifne1|Ifnt1|Infe1	interferon epsilon	protein-coding	5.03779756738037	4.90889533755903	5.00266456866321	5.32801361383398	5.26179991118412	5.21416917619899	5.47957831244885	5.20114533836963	0.358170313985052	0.252178177043117	0.563542923002808
Merged-chr16-18089224-4	chr16	18089130	18089330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011172)	promoter-TSS (NM_011172)	-40.0	NM_011172	19125.0	Mm.28456	NM_011172	ENSMUSG00000003526	Prodh	Pro-1|Pro1|Ym24d07	proline dehydrogenase	protein-coding	6.71648271876789	6.11025713859235	6.2615605472004	6.88461500414378	6.78478866022832	6.66138517616345	6.68339054932916	6.31664358707627	0.116277578190882	0.661722397359892	0.859533897618157
Merged-chr3-35751031-4	chr3	35750949	35751149	+	789.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3014.0	NR_151626	76295.0	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	4.37270284652581	4.07284036278697	4.06096226029214	4.44039715977588	4.22655103217304	4.02294140714088	3.76758904141688	4.55381699988927	-0.192336204530194	0.673033421771508	0.865589526337487
Merged-chr19-5693316-2	chr19	5693230	5693430	+	962.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_022012, intron 3 of 11)	intron (NM_022012, intron 3 of 11)	4199.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	2.90972666458673	2.69694445965161	2.8421248952576	2.62879924997094	3.16752067502331	3.14961349626353	3.02467394925695	3.3990890990997	1.85971556411288	0.00198764318529104	0.0232694826128011
Merged-chr1-136673526-4	chr1	136673442	136673642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9854.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	6.43193998274141	6.2356926723691	6.46638154483606	6.45414253141622	6.45645853905935	5.96776763125137	6.62953261023701	6.14604897032791	-0.100142550535092	0.683179773438748	0.870271715831715
Merged-chr11-108425685-3	chr11	108425599	108425799	+	794.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029606, intron 1 of 27)	CpG	433.0	NM_029606	76380.0	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	3.66220995011882	3.43029754369173	3.37985666669702	3.6069370382152	3.67307643988477	3.72784155461628	3.74410940905074	3.55491532116463	0.459212953544033	0.34032742197045	0.649441436151064
Merged-chr6-17065585-4	chr6	17065485	17065685	+	938.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207176, intron 1 of 6)	intron (NM_207176, intron 1 of 6)	436.0	NM_207176	21753.0	Mm.436548	NM_011570	ENSMUSG00000029552	Tes	D6Ertd352e|TESS|Tes1|Tes2|testin2	testis derived transcript	protein-coding	4.50382003912075	3.75871608036325	4.23850189264021	4.24970944242127	4.06183589033346	3.90806556584721	3.88573219096615	4.23579001096993	-0.465096917397841	0.306533342756103	0.619004960575493
Merged-chr11-79520123-4	chr11	79520028	79520228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077496, intron 1 of 1)	intron (NM_001077496, intron 1 of 1)	3634.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	7.18042127802497	7.18241221192195	6.58598382226514	6.79831425614951	7.03444502352423	7.1475620324171	7.13483044785244	6.80282748570084	0.109134720655803	0.626708527962692	0.840727549606008
Merged-chr1-23867560-4	chr1	23867455	23867655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290683, intron 4 of 9)	MTD|LTR|ERVL-MaLR	42181.0	NR_110972	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	6.18077297012773	5.94294906652762	5.74125129743904	6.35328141904191	6.06097482053709	6.07531805825568	6.42847390413363	6.44123032836625	0.257434006419001	0.333764051122266	0.644554544327737
Merged-chr11-59537640-2	chr11	59537540	59537740	+	859.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3929.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	2.68318978022273	2.59376230703963	2.68352849142497	2.57212665366758	2.64342971718812	2.78951704937453	2.40599034635183	2.55342182025509	-0.12838276345323	0.849205265017363	0.943018215212189
Merged-chr9-85573991-3	chr9	85573889	85574089	+	699.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	175345.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	3.34796047298631	3.12870920125899	3.34842656657544	3.56414753048909	3.23595297037723	3.02037389331021	3.16834716683736	3.11638062622132	-0.846743971029102	0.139032806834906	0.414593226669937
Merged-chr6-87399335-2	chr6	87399235	87399435	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10400.0	NM_026860	68888.0	Mm.46387	NM_026860	ENSMUSG00000030048	Gkn3	1190003M12Rik	gastrokine 3	protein-coding	3.34859918354846	3.29051703589097	3.15103450900063	3.33114609014162	3.69104455202643	3.88661940088733	3.50715430817318	3.57218452431715	1.26656576595007	0.0128727876144681	0.0944513091032085
Merged-chr11-103315535-4	chr11	103315436	103315636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29166.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	6.01531551765924	6.76302564149154	6.51824998740344	5.66298245774373	6.45425097409702	6.32325805416597	6.09416621994641	5.94179328328923	-0.123191754522101	0.696070407691638	0.87705290310108
Merged-chr17-34561417-4	chr17	34561322	34561522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2873.0	NM_010929	18132.0	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	6.61623189233284	6.7991026202709	6.41030398410168	6.33413144844298	7.00221735806348	7.01182828385817	6.68987916548118	6.8041187170686	0.488707738366255	0.0275138066058744	0.158234798443676
Merged-chr7-80025203-4	chr7	80025119	80025319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145999, intron 1 of 4)	CpG	405.0	NM_001146000	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	6.77433066270093	6.54537520815703	6.35242254875857	6.86838625058535	6.44311882790399	6.70905449567126	6.62584931271932	6.85090633705811	-0.00614562515965864	0.978742239885076	0.992516114931184
Merged-chr1-155384093-4	chr1	155383985	155384185	+	974.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 2 of 14)	intron (NM_011273, intron 2 of 14)	33359.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	5.16392489288621	5.14630171210387	4.95687295665805	5.0529877808344	5.39934545955954	5.20561047121411	5.49577211824148	4.87621152773128	0.354624693449894	0.259834624837022	0.571637780839291
Merged-chr1-152428473-4	chr1	152428355	152428555	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177756, intron 1 of 11)	intron (NM_177756, intron 1 of 11)	28588.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	4.53112732139615	4.57389129456904	4.74452168746976	4.88945901174603	4.78047186680086	4.84013396713599	4.90310037726096	5.35100722626805	0.561970262188197	0.117193682973209	0.378682551510059
Merged-chr3-36841069-4	chr3	36840910	36841110	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22096.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	4.77586009978079	4.49703887545905	5.14621468475883	5.01926621004644	5.01092563462112	4.78861118263501	4.99937979272205	4.84912686338932	0.0633228680557874	0.855958051846355	0.945801681068115
Merged-chr4-16169047-4	chr4	16168953	16169153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 1 of 6)	intron (NR_045765, intron 1 of 6)	4943.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	5.44904972726178	5.05257775311179	5.8078687276263	5.78495614248425	5.97850509566944	5.33361282876956	5.77812861477606	5.44618427635577	0.176086621363288	0.593021035405042	0.822466861757053
Merged-chr6-71452963-4	chr6	71452862	71453062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-12325.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	6.85991821328088	7.09741731571604	6.75490091380294	6.54393712429589	6.36536290580102	6.48881897182338	6.37273584281039	6.16016952851408	-0.682414940602567	0.00342250897626641	0.0354085416310563
Merged-chr11-4186720-4	chr11	4186616	4186816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134023)	promoter-TSS (NM_134023)	-117.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	7.84772546867284	7.75019921935036	7.36972756640851	7.50074686819387	7.63835937983159	7.86429405145992	7.97954912371651	7.51448202547051	0.172906646563897	0.386248371924093	0.687552275421561
Merged-chr9-120127668-4	chr9	120127564	120127764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011029)	promoter-TSS (NM_011029)	-102.0	NM_011029	16785.0	Mm.4071	NM_011029	ENSMUSG00000032518	Rpsa	67kDa|67lr|AL022858|Lamr|Lamr1|Lamrl1|MLR|P40|P40-3|P40-8	ribosomal protein SA	protein-coding	8.20526562779107	8.57585947406741	8.38060084669745	8.06696049788281	8.79354844487954	8.79470162170016	8.65510911487593	8.63331419770267	0.510893402399215	0.00306865029949631	0.0325519313961025
Merged-chr3-37142037-4	chr3	37141938	37142138	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B5_MM|LTR|ERVK	-16084.0	NM_008366	16183.0	Mm.14190	NM_008366	ENSMUSG00000027720	Il2	Il-2	interleukin 2	protein-coding	5.82604490484624	5.19248865924645	5.33009735403728	5.80041113540802	5.12719869694734	4.90744068538863	5.17650269141119	5.67060938921985	-0.570815025446302	0.09662554664249	0.340574096588254
Merged-chr8-11107418-3	chr8	11107307	11107507	+	959.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98977.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	4.39257150241082	4.31591925151251	5.04943840878067	5.01755376791438	3.97260883446898	4.00052219422263	3.92006325947876	4.15576959248453	-1.77818794227174	7.1119046152767e-05	0.00152337724529275
Merged-chr7-78913140-3	chr7	78913015	78913215	+	961.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291220)	promoter-TSS (NM_001291220)	-309.0	NM_001291221	57444.0	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	3.63468757951754	3.7404642077888	3.63516307814315	3.83866224289807	3.56564431476999	4.24022299098842	3.83254902554036	3.84671601523627	0.469040413648429	0.332020485243295	0.64308845362041
Merged-chr4-47278515-6	chr4	47278353	47278553	+	750.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 14 of 39)	intron (NM_009928, intron 14 of 39)	70441.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	3.23307698018041	3.25070698706559	3.77477408227628	3.37912487088304	3.78947277668884	3.53598926707867	3.40792294283524	3.53029638933342	0.508272985021447	0.340036713780554	0.649078099444502
Merged-chr19-16015354-4	chr19	16015235	16015435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	30260.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	5.47244040350433	5.02386091346102	5.38751537797042	5.25070329493791	5.51567651574155	5.47175298043815	5.75999845210572	5.62537317725747	0.54227813607206	0.0562897920559868	0.248421714232333
Merged-chr10-127380587-4	chr10	127380484	127380684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359244)	promoter-TSS (NM_001359244)	-84.0	NM_001359244	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	7.73667872803285	7.68017077366307	7.40596289151262	7.3906237173428	7.82760249652764	7.99159985626903	7.73895655682007	7.51839640238964	0.293339439327093	0.126260600039912	0.394853444200069
Merged-chr17-35168960-4	chr17	35168859	35169059	+	820.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4082.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	3.57128441811817	3.79432023390659	3.80256117679598	3.78707895984482	3.89946480635037	4.07495593315114	3.93523876419733	4.12548459407432	0.731777651839329	0.0960913088677255	0.339691247772328
Merged-chr8-83739706-2	chr8	83739605	83739805	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	B1_Mur1|SINE|Alu	1606.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	3.93057988968384	4.22725913974286	3.98088465044627	3.74502821006088	3.94370781435773	4.00113546533536	3.9639751043599	4.11688386164177	0.0907840675311331	0.835843107689403	0.937525731479361
Merged-chr1-133685966-4	chr1	133685865	133686065	+	882.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159649, intron 2 of 5)	intron (NM_001159649, intron 2 of 5)	4051.0	NM_172842	240754.0	Mm.36534	NM_172842	ENSMUSG00000051998	Lax1	A530029E09|E430019B13Rik	lymphocyte transmembrane adaptor 1	protein-coding	4.65038535597751	5.37954749175291	5.29017231382212	5.23035119874465	4.1382595631219	4.78786780532433	4.62963357732604	4.99026980557846	-1.01564578212656	0.0113956455494852	0.0866177968520709
Merged-chr1-30873427-1	chr1	30873327	30873527	+	1000.0	f0_c57.idr	Intergenic	CpG	-10171.0	NM_001081080	213109.0	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik	PHD finger protein 3	protein-coding	6.25058943867069	6.44372350669908	6.77645531313684	6.36151138179515	6.6562554244454	6.58144216194049	6.38981794217963	6.71689797520981	0.1868604136141	0.412992186251355	0.707970975029748
Merged-chr6-54595185-4	chr6	54595067	54595267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164361)	promoter-TSS (NM_001164361)	56.0	NM_001164361	231999.0	Mm.35416	NM_001001335	ENSMUSG00000005225	Plekha8	6330400G01|AA517676|BC052360|Fapp-2|Fapp2	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8	protein-coding	7.4810814275271	7.51548689894548	7.42554933767696	7.72710945025221	7.21813437647612	7.28531777960889	7.34952366126744	7.41068757934377	-0.319119996369698	0.0784187084568847	0.3031258989164
Merged-chr11-117968503-5	chr11	117968477	117968677	+	896.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007707, intron 1 of 1)	CpG	789.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	3.84747432914612	4.05456713154271	4.16735302536008	3.28371021114537	3.99138641080797	3.97116639888185	3.60950203157856	3.99223027519095	0.067672401219084	0.89777535318452	0.961796960676705
Merged-chr7-31109497-3	chr7	31109415	31109615	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008281, intron 2 of 12)	intron (NM_008281, intron 2 of 12)	1482.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	2.41772442263087	2.71235334214979	2.3374036689854	2.31900373353483	2.6581139055642	2.93333891833258	2.86591240236972	2.82020244251412	1.88573666938819	0.00768556103003224	0.0653428748873226
Merged-chr9-40415249-4	chr9	40415136	40415336	+	972.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	-38819.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	4.93740129244432	4.96103329619762	4.60743492319912	4.67891109346256	5.85377142641224	6.11895119994534	5.91421855544629	6.08687535179391	2.09607172956501	2.50888146735795e-13	3.01654854670729e-11
Merged-chr2-119972394-4	chr2	119972311	119972511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011941)	promoter-TSS (NM_011941)	-288.0	NM_001355293	26390.0	Mm.330501	NM_011941	ENSMUSG00000033902	Mapkbp1	2810483F24Rik|AW123212|JNKBP-1|Jnkbp1|mKIAA0596	mitogen-activated protein kinase binding protein 1	protein-coding	7.47550724971892	7.72420290224452	7.43813534464654	7.34863942313969	7.61174351835569	7.64447892025863	7.61643483753468	7.54547934628081	0.139824881506535	0.43317139806053	0.722830392839943
Merged-chr10-8883910-4	chr10	8883805	8884005	+	973.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	2165.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.67861311098301	5.78868647365605	5.83531636246586	5.26054713029606	5.28032096107444	5.80473713238638	4.94533006644682	4.92392988647591	-0.635952988016035	0.0703337704222974	0.284060794648701
Merged-chr18-67389376-4	chr18	67389287	67389487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1344.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	6.43884470793663	6.59790112847949	6.07002655649955	6.06613860542872	6.43239244209287	6.43529669452129	6.39010565815175	6.51696773079676	0.20695308274072	0.388548007155944	0.688981838974675
Merged-chr17-73948294-4	chr17	73948194	73948394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	1902.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	7.07805031098152	6.89599175858235	6.9832877588188	6.98219843566573	6.93361213845343	6.92774131167084	6.89724498017518	6.81891206779726	-0.122639880331463	0.514642265884502	0.777149563887325
Merged-chr7-34912834-4	chr7	34912741	34912941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 1 of 14)	intron (NM_008820, intron 1 of 14)	434.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	5.39509453228097	5.61809326348172	5.51294934119327	5.53472009502041	5.75848425215136	5.68763345643091	5.75926690100505	5.45193865666776	0.260748266828704	0.326486286411378	0.637972505574722
Merged-chr9-107747540-4	chr9	107747433	107747633	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153190, intron 16 of 23)	intron (NR_153190, intron 16 of 23)	23469.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	5.05231985334248	4.93339304318472	4.77335809339136	5.42991980823093	4.66811707391355	4.4411686853613	4.89718284461125	4.84605673716679	-0.735113343812746	0.0446152109880477	0.215679871799309
Merged-chr11-17192347-2	chr11	17192247	17192447	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 2 of 5)	intron (NM_024459, intron 2 of 5)	19242.0	NM_025443	66249.0	Mm.27831	NM_025443	ENSMUSG00000020116	Pno1	1810003N24Rik|AA407421|AU015468|AU019495|AU042323|Emi3|Imi3	partner of NOB1 homolog	protein-coding	3.00137146292463	2.84217956354981	2.88496006274833	3.06876554113282	2.60616785693428	2.64068750589299	2.81294580978676	3.05460395601382	-0.768877440366824	0.24341777439026	0.554524091960604
Merged-chr7-13302989-4	chr7	13302904	13303104	+	921.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083188, intron 19 of 28)	intron (NM_001083188, intron 19 of 28)	-22663.0	NM_001168504	232889.0	Mm.223639	NM_001004762	ENSMUSG00000033847	Pla2g4c	D7Ertd445e	phospholipase A2, group IVC (cytosolic, calcium-independent)	protein-coding	4.33299832192069	3.79132965172371	4.49714673784273	4.70329455820618	4.38840233576935	4.05204522565464	4.47590687976256	4.37376353625098	-0.118228278195916	0.795531964380285	0.920897975671128
Merged-chr5-34372723-4	chr5	34372624	34372824	+	844.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243123, intron 1 of 20)	intron (NM_001243123, intron 1 of 20)	2791.0	NM_001243123	231128.0	Mm.286885	NM_001030306	ENSMUSG00000037210	Fam193a	-	family with sequence similarity 193, member A	protein-coding	4.45814584854211	4.59063051353565	4.37453142501856	4.00380266786043	4.54243731412197	4.54740086530679	4.31096276508927	4.32750658344237	0.186575738988228	0.643787268837072	0.849901404168518
Merged-chr19-53535656-3	chr19	53535533	53535733	+	895.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085390, intron 2 of 3)	intron (NM_001085390, intron 2 of 3)	6315.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	4.00821567316263	4.36896267230049	4.62117501363795	4.72740907087777	3.38189856314555	3.59861058074199	3.39067485753404	3.54366391732685	-3.10452147748232	2.30275737842415e-08	1.1358833502346e-06
Merged-chr6-125418953-4	chr6	125418862	125419062	+	961.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38458.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	4.83313001319745	4.78549775087876	4.49441536963959	4.42973045886641	4.70386596777039	4.62576779810156	4.33904822384338	4.57514240520266	-0.139369934973395	0.707800898932298	0.882638079860528
Merged-chr4-129016418-3	chr4	129016303	129016503	+	909.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23179.0	NM_001033966	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	3.78121533863823	4.11880874032911	3.78176465918906	3.40758692983177	3.97508866791479	4.05152522916512	3.65965046310078	3.35877725159402	-0.00871203173337115	0.987115830450685	0.995258250959001
Merged-chr9-123851976-6	chr9	123851888	123852088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148925)	promoter-TSS (NM_148925)	-89.0	NM_001110253	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	6.98984538883311	6.77386932984444	7.70479556339595	7.70261021939882	7.14259594246668	7.11488534483528	7.40859154220746	7.44963803168676	-0.107643383433776	0.68082459696196	0.868956507598538
Merged-chr13-47277460-3	chr13	47277361	47277561	+	805.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83458.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	4.09524489189576	3.98140049086062	3.45169016791333	3.64309880712309	3.33454673168763	3.56890537064482	3.77297604745752	3.78700501670643	-0.574068815082494	0.274812586073031	0.586568461799577
Merged-chr1-132370939-4	chr1	132370857	132371057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178874, intron 2 of 4)	intron (NM_178874, intron 2 of 4)	-3009.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	5.97373618404369	5.84818058206547	6.52089334590119	6.21770850052809	5.82568787962902	5.54752328442906	5.98739230830806	5.99240306449772	-0.494549620414413	0.0728682646465	0.290408186409475
Merged-chr6-123259946-3	chr6	123259842	123260042	+	875.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2165.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	4.19545352359451	3.6041042795001	3.62333482808337	4.2128407095392	4.09225952329619	3.67924177281756	3.66822538492027	3.79007119758217	-0.343923175713661	0.504469911399983	0.770800870451296
Merged-chr11-58096311-4	chr11	58096182	58096382	+	946.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-7688.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	4.78478449177557	5.19975397976037	4.78557949038332	4.96113589458782	4.44702474336379	4.49417312154144	4.34438256002008	4.54592145381334	-1.05950612221894	0.00309831472843014	0.0327738065173026
Merged-chr4-132573540-4	chr4	132573462	132573662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	9495.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	6.20728598463329	6.42898531434644	5.8544515565975	5.93047470431453	6.47315404271694	6.13019659144873	5.87441634169378	6.47972033234478	0.227681201759582	0.40482074331127	0.701891108765569
Merged-chr3-129877966-3	chr3	129877907	129878107	+	823.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023196)	promoter-TSS (NM_023196)	-599.0	NR_104611	66350.0	Mm.151951	NM_023196	ENSMUSG00000027999	Pla2g12a	2310004B05Rik|GXII|GXII-1|GXII-1-PLA2|Pla2g12|Rossy|mGXII-1	phospholipase A2, group XIIA	protein-coding	3.30710119269425	3.25196534074445	3.578919915269	3.66486902467668	3.29159897517934	3.29179527141188	3.61093534533085	3.30587631713614	-0.311898864610447	0.565235096157763	0.807386344031093
Merged-chr9-57651019-4	chr9	57650878	57651078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	2653.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	5.84987891214099	5.95774069866242	6.56017548288105	5.96608529699045	6.06180723776673	5.9782153325472	6.06912673873206	6.32132754309488	0.0104369694711324	0.969123215695779	0.988873837789174
Merged-chr6-114649326-2	chr6	114649226	114649426	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 2 of 19)	intron (NM_001253718, intron 2 of 19)	6229.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	3.52830123443907	3.1966968503304	3.52881258760871	3.60166216943966	3.22116072583036	3.21966281872067	3.23171207898396	3.75983266772182	-0.331947616229675	0.555623935414094	0.801591959543503
Merged-chr8-120619799-7	chr8	120619710	120619910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308449, intron 2 of 3)	intron (NM_001308449, intron 2 of 3)	14572.0	NM_197988	68918.0	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	5.93055709164904	6.3280008032135	6.7750490541884	6.07953657377447	6.19485712607441	6.15795740666391	5.97237116069684	6.53708574441183	-0.120983596898852	0.6681653575815	0.862848418644997
Merged-chr12-98249893-4	chr12	98249811	98250011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008079, intron 5 of 16)	intron (NM_008079, intron 5 of 16)	9548.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	6.63854641617546	5.9221445784105	6.27571458458787	6.50982644631402	6.49000164357727	6.43284448426059	6.2243550952045	6.3988011093709	0.0359947793961593	0.885636005219867	0.957045685546015
Merged-chr3-41039038-4	chr3	41038936	41039136	+	941.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44010.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	4.45137755357386	4.78631352844772	4.26926777402804	4.11118618807538	4.11597027286739	4.78391485307452	4.88709749292206	4.21680031317965	0.258095481828483	0.563454322884564	0.806342969490355
Merged-chr19-14692355-4	chr19	14692253	14692453	+	841.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94170.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	4.18282550920727	4.31081220358024	4.18344877640943	4.1213037483733	4.3529098236569	4.26091194559224	4.33681777189262	4.08495656591676	0.177093795922099	0.650947439012021	0.853575545511158
Merged-chr10-95494426-2	chr10	95494326	95494526	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026065, intron 3 of 5)	RMER16|LTR|ERVK	7523.0	NM_001359476	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	3.00208284499776	3.12914797899404	3.06006617532208	2.75121575239025	2.77715885675202	2.77528562494128	2.99103568802676	3.0008782497846	-0.429066325832921	0.492631309690505	0.763658218913778
Merged-chr11-82571622-4	chr11	82571526	82571726	+	909.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61727.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	4.85290102162887	4.90258625304173	4.57819065668733	4.94599090192496	5.15795471790943	4.61781367100198	4.55824251982011	4.95259756806176	0.0509450327497432	0.888522149760026	0.958180162421076
Merged-chr13-66907118-3	chr13	66907011	66907211	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177750, intron 1 of 2)	intron (NM_001177750, intron 1 of 2)	1696.0	NM_001177750	100038538.0	Mm.405005	NM_001177750	ENSMUSG00000074826	Gm10767	-	predicted gene 10767	protein-coding	3.61335082356725	3.55288733165416	3.84382637030789	2.9189323792449	5.56584402371016	5.77242922538796	5.32324134826146	5.46571450974397	5.44832570249754	2.81959822468767e-30	3.64902149154625e-27
Merged-chr6-17749747-3	chr6	17749663	17749863	+	850.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	593.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	3.59475803022247	3.3051197394821	3.64861345491735	3.01980366418947	3.87605669334849	3.53877936505751	3.86808543476084	3.74678983909695	1.16673019540091	0.0299893071899248	0.167232038427909
Merged-chr17-86166834-6	chr17	86166731	86166931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011104)	promoter-TSS (NM_011104)	-954.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	4.84479464491846	4.59916756704178	4.60388301578061	5.00812472531306	5.03508372384374	5.01863314615769	4.89333254263333	4.98120844352126	0.378899130286228	0.26196441001342	0.573963885257033
Merged-chr15-59685588-3	chr15	59685473	59685673	+	866.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36919.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	3.69878071556691	3.6862517133522	4.27286212032671	3.84423341584618	3.3341391691493	3.24030637388088	3.63142595772031	3.47160459234847	-1.50800054659284	0.00524643273491815	0.0492594427699167
Merged-chr18-64518763-4	chr18	64518649	64518849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2192.0	NM_001142950	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	6.18022656815854	6.01161215809872	6.01401043876056	6.12037942119466	6.03053169610359	6.05031362295803	6.18801323257953	6.61746062896155	0.237422089957611	0.344720949076097	0.653184944344138
Merged-chr1-131679836-4	chr1	131679732	131679932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8863.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	7.44863695182574	7.01514570468636	6.95036130947154	7.16611828651479	7.26870902398831	7.35154173634873	7.25773045191687	7.41699629629355	0.22344045213827	0.254447525205703	0.565837303068506
Merged-chr9-74990152-4	chr9	74989993	74990193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153584, intron 1 of 11)	intron (NM_153584, intron 1 of 11)	13982.0	NM_153584	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	4.88643141346567	4.73766821057338	5.20985304143783	5.14600520291284	4.74262231945196	4.82456317002134	4.86395375863682	5.2062063353466	-0.194279427399611	0.570182257899933	0.809902076092262
Merged-chr4-132588675-4	chr4	132588583	132588783	+	798.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24616.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	4.34064942249486	4.11593583114345	4.00140950649305	4.12940007062445	4.05979333453933	4.12469580033339	3.6577849044062	3.72981183284856	-0.638866949205987	0.1578000213438	0.444551876800061
Merged-chr5-5755216-3	chr5	5755134	5755334	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5917.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	3.10513655235984	3.09599788484328	3.04654682479418	3.53024001737813	3.05045827078729	3.0266039455703	2.84389044889041	2.85054072340935	-1.13161290275297	0.0732560152806182	0.291415073585152
Merged-chr16-20371914-4	chr16	20371796	20371996	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013790, intron 17 of 29)	intron (NM_013790, intron 17 of 29)	-46492.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	5.02046148221499	4.52342948244898	5.28813960332646	4.99385458058273	4.90620221062758	5.16068155453593	4.96354037047467	4.67992156847738	-0.0875737832895829	0.806049165211459	0.925322678935546
Merged-chr12-86819389-4	chr12	86819326	86819526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	65388.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	7.19816651493255	7.54226395695322	7.0329510081377	6.52280301995842	7.46700246888499	7.49317489959244	7.35808280097419	7.0023122514612	0.308300308526674	0.231682146055638	0.541246385108847
Merged-chr16-36061368-3	chr16	36061276	36061476	+	886.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027342, intron 1 of 4)	intron (NM_027342, intron 1 of 4)	10139.0	NM_027342	70186.0	Mm.212991	NM_027342	ENSMUSG00000003955	Fam162a	2310056P07Rik|HGTD-P	family with sequence similarity 162, member A	protein-coding	3.57836249361189	3.57920999329828	3.72864537662127	3.5487528603652	3.41633278907125	3.32675149968373	3.56449897728271	3.67847002820714	-0.34297349729496	0.489285169237892	0.761643200749732
Merged-chr15-3270126-4	chr15	3270024	3270224	+	885.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009155)	promoter-TSS (NM_009155)	-643.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	3.86334863281964	3.91214717507208	3.7091208057959	3.76484496979039	3.8867276129357	3.58487293394225	3.98392222581787	3.81216386820302	0.0493467385275539	0.91340315129808	0.967524531047837
Merged-chr8-120489494-4	chr8	120489361	120489561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	CpG-14576	595.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	6.14658624581982	6.22739898278077	6.00026003041763	5.98983356073025	6.31997794381082	6.15395923294044	6.03460344897228	6.03985462913422	0.0958657803015712	0.685451824613192	0.871409613223223
Merged-chr9-44882205-3	chr9	44882118	44882318	+	915.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357549)	promoter-TSS (NM_001357549)	-944.0	NM_001081049	214162.0	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	4.32392164330209	3.987661824314	3.7255015419807	3.62061200084706	3.73888604622396	3.96086891129427	3.71112332024004	4.3577743368919	0.0814276203186923	0.871705612045708	0.951818337114215
Merged-chr2-72285865-5	chr2	72285847	72286047	+	983.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 1 of 19)	CpG	246.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	4.64564671724383	4.94417072349579	5.02829693670097	4.89145288522644	4.80256283966062	4.98901532378372	4.90141850758108	5.44157866532527	0.325751320615882	0.344813440668042	0.653255859394495
Merged-chr5-90655555-4	chr5	90655464	90655664	+	889.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15037.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	3.8269934254051	4.06194815300803	3.71332388467785	4.24506197169468	3.83854029051037	4.15290103578316	4.0577922195433	4.02735348624108	0.0580584441679601	0.899026988210293	0.962375626232471
Merged-chr19-16109001-2	chr19	16108895	16109095	+	577.0	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-23836.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	3.56497322607325	3.63616696718282	3.340415411706	3.17972246018498	3.63436227760786	3.78412627185367	3.2664832217241	3.2760489638563	0.247081739127285	0.653698705425494	0.855149414296956
Merged-chr8-75083995-4	chr8	75083900	75084100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9618.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	8.30625683775738	8.48567330411914	8.48409110867927	8.30663513922712	8.40683910552732	8.34994398093597	8.15822491478651	8.12261560709683	-0.162282854857186	0.315653847540117	0.627490510363011
Merged-chr3-39175080-1	chr3	39174980	39175180	+	606.25	f0_c57.idr	Intergenic	Intergenic	288140.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	2.68055745925322	2.75968871089824	2.83839499127971	2.62057397487079	3.51750164209743	3.40027521152649	3.26737122405783	3.47891949831817	3.01959262220507	7.64743371131002e-07	2.73811209324616e-05
Merged-chr1-23419160-3	chr1	23419045	23419245	+	820.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35970.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	4.12177958421595	3.91375824705386	4.12240872982294	4.47833048863449	3.82189942668685	4.20059536892714	3.96252936467612	3.87167918837639	-0.596151396005774	0.18565354074526	0.483574244399563
Merged-chr5-8675683-6	chr5	8675550	8675750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011076, intron 6 of 29)	Tigger7|DNA|TcMar-Tigger	-52698.0	NM_198620	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	4.63494933890372	4.51318564002722	5.0567857888299	4.84191665654069	4.86063116993116	4.76935072115824	4.65501213684039	4.86045341402782	0.0253159098193389	0.942127586421203	0.979062797089676
Merged-chr10-21945032-4	chr10	21944956	21945156	+	956.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 2 of 13)	PB1D9|SINE|Alu	-33616.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	4.74604057382421	4.60124568971598	4.42145074399774	4.57792927823251	4.68243912804364	4.91702710328423	4.65092575375	4.41874248582019	0.187810641688272	0.599792010108906	0.826560500894977
Merged-chr4-43218162-4	chr4	43218054	43218254	+	932.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081413, intron 11 of 39)	intron (NM_001081413, intron 11 of 39)	-49005.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	4.57373884590099	4.77888339797327	4.73552864186693	5.16348182217169	4.80923010427986	4.52100843822769	4.67527471147827	4.65451703953334	-0.373205266818809	0.309374540318059	0.621639860131524
Merged-chr7-92893716-4	chr7	92893625	92893825	+	729.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	B2_Mm2|SINE|B2	18472.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	3.91097389800698	4.51276745864127	3.79641063028606	3.79159153171334	4.42702016231436	4.2416100085394	4.18779375509787	4.11312189423686	0.539421343583397	0.240195768601719	0.550710524608932
Merged-chr9-38820343-4	chr9	38820285	38820485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4977.0	NM_146781	258777.0	Mm.223208	NM_146781	ENSMUSG00000043911	Olfr922	MOR161-3	olfactory receptor 922	protein-coding	4.99048561141559	5.16317502363073	5.44108748840604	5.3693735720791	5.34497490082323	5.34617078798337	5.33051519873672	5.49017198501205	0.208767670304194	0.47750918664914	0.753678213550772
Merged-chr8-11558237-4	chr8	11558124	11558324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302459)	promoter-TSS (NM_001302459)	-186.0	NM_001302459	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	9.31374324769292	9.38355641413695	9.69698254146352	9.33813730070806	9.39736915315438	9.50182615457523	9.61470027710008	9.45017688230749	0.0637109133242216	0.678713905701432	0.868137421912153
Merged-chr5-79794969-1	chr5	79794869	79795069	+	829.333313	f0_balb.idr	Intergenic	Intergenic	-1225602.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	3.51809824705632	3.08762243631945	3.65180774819924	3.63567121416669	2.73442779913108	3.04896650152006	2.99834005186678	2.86122839583442	-2.56590240344552	0.000181854797731781	0.00335690940035022
Merged-chr11-83536596-4	chr11	83536492	83536692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6074.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	5.88145271764613	6.15094511532239	6.00927868553333	5.31222295951495	6.12369340421423	5.61326519534692	5.40668875068991	5.55040975065332	-0.244383211608687	0.459935466953369	0.742271214480192
Merged-chr4-9136009-4	chr4	9135949	9136149	+	915.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133244.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	4.0759971387545	3.73491296051031	4.12250823746244	4.5053894573402	4.13007437772512	3.99599823835753	4.05899668966038	3.87252873995538	-0.352110701427529	0.449895926347822	0.734929420530334
Merged-chr10-22307504-2	chr10	22307404	22307604	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015465, intron 2 of 2)	intron (NR_015465, intron 2 of 2)	784.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	3.29051546549142	2.96030219502782	3.44791233212058	3.27256910996342	3.23196088186347	3.34624836122487	3.16325430624986	3.17290866568993	-0.0853541458424434	0.878662158667684	0.954698297745423
Merged-chr9-63129945-3	chr9	63129830	63130030	+	681.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17050.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	3.40600926302638	3.23043266073123	3.3005466808112	3.55046679559049	3.11274041467039	3.16714439438939	2.98164325074747	3.2423779840421	-0.987734568667693	0.0806282137487227	0.308003844062702
Merged-chr10-26797502-4	chr10	26797393	26797593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	24981.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	7.70115694961828	7.42893045877459	7.71843662526	8.10265274236371	7.70270154367717	7.28471539190673	7.56469594656473	7.4092074170803	-0.348647863118135	0.10153072411032	0.349626372612238
Merged-chr6-129747567-1	chr6	129747467	129747667	+	661.0	f0_balb.idr	Intergenic	Intergenic	-7083.0	NM_177155	320407.0	Mm.123265	NM_177155	ENSMUSG00000043932	Klri2	A530090P03Rik	killer cell lectin-like receptor family I member 2	protein-coding	3.22299310627671	3.10240901426785	3.16903280290054	3.6145520086385	2.98995234812639	2.81244206292065	2.84827922251642	2.85502909554484	-1.8067489558418	0.00588715774408892	0.053520113776034
Merged-chr16-36798505-3	chr16	36798404	36798604	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134111, intron 5 of 5)	ORR1A3-int|LTR|ERVL-MaLR	10201.0	NM_001113405	106389.0	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	3.5328684309554	3.50037516708793	3.22119541675917	3.37344470554208	2.80999441847856	3.14241538399893	3.20902437035508	2.96062710076328	-1.53308619340528	0.0116337638162327	0.0879145862870408
Merged-chr18-62228500-4	chr18	62228373	62228573	+	932.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48373.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	4.76614224960599	4.64263305763138	4.98589825284741	4.26770231802695	4.39076437447995	4.34898514925306	4.43814957841948	4.45554711017933	-0.599590462165363	0.132097598968846	0.404600315148309
Merged-chr17-13905782-4	chr17	13905675	13905875	+	963.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010806)	TTS (NM_010806)	-42598.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	5.00172578717638	4.74421545286649	5.53713260301681	5.66855714349826	4.77818181817055	4.86879940158966	4.57430145595041	5.13194706737004	-0.8648096560607	0.0248029465294895	0.147612734481722
Merged-chr5-32725600-1	chr5	32725500	32725700	+	789.5	f1_balb.idr	Intergenic	RMER4A|LTR|ERVK	20742.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	3.07436538416876	3.00102402047739	3.36985181629656	2.66289578672014	2.60337867293073	2.80131320442628	2.82224904251072	2.69080680858681	-1.46451719914156	0.0354902900110129	0.186980772553081
Merged-chr19-32309606-4	chr19	32309505	32309705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	MTD|LTR|ERVL-MaLR	39711.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	6.9723139215893	7.40803778061474	7.13518240760237	6.42224617916625	6.88464955514173	6.58666020088718	6.92580382323058	6.23837708662219	-0.469710807133943	0.0954082971201049	0.338049040804019
Merged-chr11-79460941-2	chr11	79460840	79461040	+	718.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 30 of 57)	intron (NM_010897, intron 30 of 57)	23091.0	NR_045305	104522.0	Mm.436987	NR_045305	ENSMUSG00000091523	AU040972	AU040954	expressed sequence AU040972	ncRNA	3.58541272516946	3.30834576864756	3.38139764098181	3.4760478183101	3.15073956952443	3.37773896308022	3.19261619310613	3.37956043410635	-0.60991954593747	0.251572230018519	0.562892525080843
Merged-chr2-158154197-4	chr2	158154090	158154290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7798.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	5.85833230271227	5.12520477121888	5.2487045364391	5.18279073376351	5.34270633210995	5.45730307016151	5.43186756310328	5.61162584363567	0.148910093373321	0.638060873244895	0.847040716325261
Merged-chr2-127890782-4	chr2	127890690	127890890	+	842.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028765, intron 8 of 17)	intron (NM_028765, intron 8 of 17)	36162.0	NM_028765	74121.0	Mm.244835	NM_028765	ENSMUSG00000027380	Acoxl	1200014P05Rik|AV025673	acyl-Coenzyme A oxidase-like	protein-coding	4.11063161399853	4.5767646115223	4.00542940752337	3.90937096253625	4.37946139320846	4.67219854685697	4.36506631253645	4.15863205356277	0.55917736965909	0.19626325488226	0.497253962689623
Merged-chr15-78583518-3	chr15	78583403	78583603	+	888.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1914.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	3.03301983161561	3.04937871411785	3.03346366901009	3.0543228204617	2.48991489758692	2.69166987767918	2.58035818158492	2.72915224692951	-2.26035167699961	0.00165794281336552	0.0202149580764035
Merged-chr4-42950272-4	chr4	42950175	42950375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355440)	promoter-TSS (NM_001355440)	-121.0	NM_001355440	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	7.20824061778309	7.19085155206333	6.79611564576613	6.86128168272077	6.9722695977797	7.16512540203739	7.2355693397346	6.9180812131178	0.0750705652455689	0.719623388008531	0.888022825078143
Merged-chr5-148595534-4	chr5	148595451	148595651	+	951.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42763.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	4.22346147521861	3.91651422289956	3.954582005859	4.38092799564974	4.79791682033651	4.49311275917586	4.4672290104914	4.76889314830619	1.1325907830613	0.00635384473476797	0.0565749705248998
Merged-chr2-45239034-4	chr2	45238912	45239112	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121570.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	5.23643285044496	5.16670010575123	5.32021286625387	4.62711366302394	5.06609801843338	5.12468928605739	4.775278035479	4.7114984975248	-0.319728078665722	0.378004483313418	0.680636285273186
Merged-chr1-59186523-3	chr1	59186432	59186632	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159948, intron 15 of 33)	intron (NM_001159948, intron 15 of 33)	-23143.0	NM_001164682	227157.0	Mm.474049	NM_145143	ENSMUSG00000079550	Mpp4	Dlg6	membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4)	protein-coding	5.20971712465721	4.97084955824203	5.07764273101513	5.76309082353909	3.27137079739268	3.64599683030404	3.80128714424962	3.66840133843912	-5.64136296668775	7.86343397431793e-13	8.54521170775536e-11
Merged-chr18-5803130-4	chr18	5803028	5803228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	210481.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	8.10637135142056	8.29354896171879	8.29412083010658	8.03445969592229	7.57133439544692	7.66801925407315	7.7286953599215	7.32534136574789	-0.78135701025516	1.2528106669169e-05	0.00033759735327263
Merged-chr18-4266207-4	chr18	4266093	4266293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86760.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	7.20731629966819	7.18641395530923	7.36149951080405	7.48391856464636	7.04146280019425	6.6599673775027	6.94809282683216	7.04170821930663	-0.526823891227533	0.00861904491585877	0.0708778973349093
Merged-chr5-90731653-2	chr5	90731557	90731757	+	744.375	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-27641.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	3.98204105981388	3.81215033141048	4.38850911229393	4.89659789724504	3.22030519896127	3.44228685928491	3.58446798946099	3.39287268744841	-2.95851441046949	8.84445610573842e-07	3.13203751816097e-05
Merged-chr15-83166806-4	chr15	83166706	83166906	+	989.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 1 of 8)	intron (NM_029787, intron 1 of 8)	5402.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	5.14128535469428	4.6814781620052	4.93350278389592	5.03500216037199	5.17691366139261	5.40711033931173	5.20885560269714	5.34508398129763	0.602791786336506	0.0525221148420054	0.238803680123865
Merged-chr16-20316978-4	chr16	20316863	20317063	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183158, intron 2 of 8)	intron (NM_183158, intron 2 of 8)	8441.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	6.37033913912361	5.52702953142571	6.22640921708982	6.24039246963053	5.58090172662285	5.31018148174375	5.72415650702264	5.30798419083421	-1.03154306125747	0.000773261852661117	0.0109510555930294
Merged-chr13-113446331-4	chr13	113446259	113446459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045501)	TTS (NR_045501)	56485.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	6.58066204320265	6.15707801608982	7.34076775431605	7.26447208974295	5.94108867248252	5.65140306745544	6.39986742420059	6.26027916200806	-1.21854533533713	0.000193224863622868	0.00353547284053464
Merged-chr13-12408873-4	chr13	12408760	12408960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144835, intron 13 of 44)	intron (NM_144835, intron 13 of 44)	13485.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	7.87489033009275	7.75458550014946	8.03931732666389	8.12047158212645	7.7986160921692	7.6150854318766	7.83816603216048	7.56860082687695	-0.321152388371159	0.0730514244341691	0.290914139365301
Merged-chr2-28699872-6	chr2	28699761	28699961	+	868.5347289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027283)	promoter-TSS (NM_027283)	-210.0	NM_027283	69987.0	Mm.239376	NM_027283	ENSMUSG00000026809	Spaca9	1700026L06Rik|MAST	sperm acrosome associated 9	protein-coding	3.79106921229294	3.5485987850096	3.35627205747033	3.14398491109832	3.91242081062925	3.7108868430316	3.40683067022809	3.6934998310488	0.711824127550668	0.18516745406267	0.482979743219862
Merged-chr7-123465815-4	chr7	123465722	123465922	+	943.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007474, intron 4 of 5)	intron (NM_007474, intron 4 of 5)	3528.0	NM_001109045	11833.0	Mm.273175	NM_007474	ENSMUSG00000030762	Aqp8	AI255744|AQP-8	aquaporin 8	protein-coding	5.07829253544571	5.06560350626659	4.62735908985658	4.70022844118621	4.67208629341584	4.42771419014691	4.76153566189275	4.74369611640332	-0.452735527501902	0.208014265533246	0.512131970751303
Merged-chr18-39489367-5	chr18	39489287	39489487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2142.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	6.06775773307655	6.29084136261718	6.41139531394893	5.8096271426685	5.81881257534745	5.99276029848763	6.01689821981804	6.1256178582214	-0.255856448829685	0.333207067889591	0.644020579610427
Merged-chr7-66689765-4	chr7	66689672	66689872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003961)	promoter-TSS (NR_003961)	-117.0	NM_152815	72635.0	Mm.289796	NM_152815	ENSMUSG00000053091	Lins1	2700083B01Rik|AW547219|Lins|Lins2|Wins2	lines homolog 1	protein-coding	8.79012856705306	8.91582725052142	8.85869280460887	8.75515224835619	8.74308973155173	8.88972503878203	8.91492490490391	8.55952396923503	-0.0579339179521752	0.707211116665198	0.882410486225344
Merged-chr6-3498388-4	chr6	3498310	3498510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024260)	promoter-TSS (NM_024260)	17.0	NM_001167750	73288.0	Mm.45539	NM_024260	ENSMUSG00000001376	Vps50	1700034M03Rik|8430415E05Rik|BLM|C87205|Ccdc132|mKIAA1861	VPS50 EARP/GARPII complex subunit	protein-coding	6.91052263775565	6.9816155373399	6.52130795171841	7.19786000775627	6.82877459432283	7.23989937278815	7.25480871680978	7.10511829675469	0.236671443061071	0.303010456721949	0.615539788674154
Merged-chr8-61517947-4	chr8	61517829	61518029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 18 of 21)	intron (NM_001293772, intron 18 of 21)	30195.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	7.27476087583468	7.23225428178014	7.67333604745802	7.47807173882286	6.95666469220152	6.73103981279892	7.22920344229373	6.76594898544617	-0.665440361873001	0.0018814486658662	0.0222984957058424
Merged-chr17-50674756-4	chr17	50674663	50674863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 5 of 5)	LTR48B|LTR|ERV1	-23918.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	5.63326883572493	5.86975295959389	5.75941940199036	5.99882478625267	5.58444944876636	5.58209501302013	5.73015744259564	5.30243492006372	-0.46065659036637	0.0903695490728214	0.32831427455258
Merged-chr3-51475916-4	chr3	51475802	51476002	+	920.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053089)	TTS (NM_053089)	-8064.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	4.64876299491457	4.51227450235975	4.57361769775626	4.74090122457475	4.66335375812045	4.34208271925251	4.43056378800744	4.26303979509968	-0.408939386459403	0.27379232597163	0.585497971228284
Merged-chr14-101542565-4	chr14	101542476	101542676	+	954.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	66615.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	4.65458077227539	4.04392620801874	4.92909309429059	4.93403740669013	4.59074230177986	4.48567359597698	4.59492302480824	4.53227114261456	-0.307417557373007	0.45604635763213	0.739437212266054
Merged-chr16-57177442-2	chr16	57177342	57177542	+	627.549988	f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 15 of 17)	intron (NM_026254, intron 15 of 17)	-10110.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	2.88590407465883	3.20878237514653	2.80813762069353	3.04505641336198	3.44612368993312	3.39552573647288	3.69179846429715	3.27852188487629	1.70193603815207	0.00472348329696323	0.0455634662684031
Merged-chr2-6209358-3	chr2	6209266	6209466	+	638.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024208, intron 1 of 4)	intron (NM_024208, intron 1 of 4)	3628.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	3.2877921514018	3.06523156356524	3.3872720007479	3.39617125701165	2.76811532871098	2.89920495017585	2.99047163097705	2.93318651206164	-1.74513715344396	0.00533591319795797	0.0498693494639509
Merged-chr9-15307010-4	chr9	15306948	15307148	+	923.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199484)	promoter-TSS (NM_001199484)	-600.0	NM_001199484	70984.0	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	4.15222046327696	4.26203773815448	4.88155520734073	4.09456616727532	3.95710732997482	4.17727464685846	4.13486337579879	4.41586533127452	-0.491614589261473	0.27641484465976	0.588482268167796
Merged-chr8-70634259-4	chr8	70634128	70634328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1772.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	7.15056719355525	7.10324369973438	6.65671022959158	7.02855899947032	7.07941352112923	6.75063387191505	7.13771939134636	7.04317495899968	0.0185356141156838	0.929897724041089	0.974727857709636
Merged-chr2-151543043-3	chr2	151542961	151543161	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126058, intron 2 of 3)	CpG-8654	578.0	NM_001302078	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	3.77876233567701	3.82418547192025	4.55350099918258	3.69327726891014	3.92939079622013	4.01031294981209	3.70777230808219	3.88447370333609	-0.317939251081782	0.526578648710373	0.783803651205536
Merged-chr17-81536357-4	chr17	81536269	81536469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	202018.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	6.38790443419292	6.43767885506749	6.68842881074228	6.67543173022103	6.3363347019406	6.41493449055609	6.26453166377182	6.17185410551777	-0.386686420356261	0.0813238359382844	0.309417833291006
Merged-chr10-8948459-3	chr10	8948417	8948617	+	774.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62447.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.79917395648218	2.66275002880745	2.94637656657204	2.89709884864798	3.34809611146158	3.25599092773612	3.53437871476171	3.45867432317848	2.24901427083915	0.000310740349160409	0.00521655361153037
Merged-chr2-132695813-4	chr2	132695578	132695778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028637, intron 2 of 2)	intron (NM_028637, intron 2 of 2)	5080.0	NM_028637	73747.0	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	3.70808954400347	3.37970558267963	3.79843264726185	3.34100703019165	3.42872221190546	3.30658148605254	3.43494361832128	3.79605130098132	-0.19320461548364	0.719869987785526	0.888028373825666
Merged-chr8-68590749-3	chr8	68590653	68590853	+	992.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172753, intron 2 of 9)	intron (NM_172753, intron 2 of 9)	144393.0	NM_001252623	234356.0	Mm.334569	NM_172753	ENSMUSG00000036356	Csgalnact1	4732435N03Rik|CSGalNAcT-1	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding	4.27641812689821	3.76182358568087	3.97326748589463	4.03856980289644	5.07506342969892	5.28769796009941	5.22375580470534	5.74110361842417	2.79767379379425	7.23147826311341e-12	6.65025053346447e-10
Merged-chr15-86364049-4	chr15	86363906	86364106	+	965.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358062, intron 6 of 9)	intron (NM_001358062, intron 6 of 9)	86331.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	5.19562522458686	5.00975867145	5.00825738813511	5.31505869522196	4.62744004176832	4.92402478685344	4.63965753399636	5.13328962985944	-0.609264541678621	0.0722641629119717	0.288849187442219
Merged-chr4-43547347-4	chr4	43547257	43547457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011602, intron 19 of 56)	intron (NM_011602, intron 19 of 56)	15226.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	5.56454830619616	5.5963040613331	5.56551479882007	5.80717049620418	5.30747467890352	5.53859947336462	5.73491117913104	5.56160578781174	-0.196532777798384	0.477737942728586	0.753905532102384
Merged-chr5-147418569-4	chr5	147418477	147418677	+	902.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033625)	promoter-TSS (NR_033625)	-43.0	NR_033625	100039805.0	Mm.394705	NR_033625	ENSMUSG00000106820	D5Ertd605e	Gm2433	DNA segment, Chr 5, ERATO Doi 605, expressed	ncRNA	4.73346952017405	4.78892922251141	4.62175274017279	4.80234677060026	4.25496604753207	4.53927617004141	4.52011228173869	4.57896809498142	-0.610644495482433	0.0878727685069754	0.323323638643474
Merged-chr1-168432438-4	chr1	168432318	168432518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291509)	promoter-TSS (NM_001291509)	-249.0	NM_008783	18514.0	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	8.75788293162145	8.74860482877566	8.7633900924518	8.87635258923943	8.71000159999383	8.60681137252712	8.91433707623747	8.74956263088773	-0.0504690438335549	0.734527459632098	0.895080097126908
Merged-chr7-78913901-4	chr7	78913774	78913974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113527)	promoter-TSS (NM_001113527)	109.0	NM_020583	57444.0	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	6.43546000754387	6.96829539498243	6.86460903593997	6.64456462092028	6.58940280275568	6.6672311728504	6.72208572184888	6.50275457584797	-0.173166610180426	0.432137862560934	0.722198138555674
Merged-chr1-86479291-4	chr1	86479196	86479396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47261.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	7.15399990798189	7.34124087312359	6.42248533273158	7.35442421876305	7.2457595515499	7.13668166872509	7.17454218212056	7.16150139786127	0.0699915694145948	0.772388921445168	0.910868516556086
Merged-chr12-32786180-4	chr12	32786054	32786254	+	862.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-34181.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	3.89843215467451	3.99260035940479	3.95665704841754	3.59264313153599	5.06840383052678	4.34377694929223	4.51868843723533	4.25633688516392	1.83630621429677	3.19402865162082e-05	0.000765480691561342
Merged-chr18-67800056-4	chr18	67799968	67800168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045376)	promoter-TSS (NR_045376)	-39.0	NM_027556	70799.0	Mm.30857	NM_027556	ENSMUSG00000024542	Cep192	4631422C13Rik|D430014P18Rik	centrosomal protein 192	protein-coding	7.39401662693973	7.21193113360144	6.90577342669431	7.03533058464208	7.43238132460944	7.41858169593047	7.67148886175783	7.13420858792348	0.382504650590647	0.0667715152002056	0.275536534317087
Merged-chr9-13828095-3	chr9	13828005	13828205	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310721)	promoter-TSS (NM_001310721)	389.0	NM_176836	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	6.11134503393719	5.95377547855991	6.6479096238071	6.02216703203092	6.15679350972445	6.08716620149447	6.14193190058761	6.35367306633002	-0.021558652532177	0.934518646295909	0.976356212091203
Merged-chr5-115003455-3	chr5	115003385	115003585	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8039.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	5.12026781317753	5.21197008795295	4.48893469967217	5.00723713115328	4.45539710646004	4.79451826026631	4.05097120493102	4.23802936082917	-1.23330356445466	0.00315868328915612	0.0332247551114
Merged-chr4-62265631-4	chr4	62265523	62265723	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20806.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	4.95892918041063	5.61900598573303	5.34538484955636	5.24977690869871	5.46680077079571	5.60712008778091	5.58855945464989	5.45736010029484	0.374228792580042	0.206258693929298	0.510210725476936
Merged-chr1-80661900-4	chr1	80661857	80662057	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	3395.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	4.06056303812026	4.23078656506872	3.8730761264516	3.89573960697056	3.75641386923025	3.77123882611704	3.85706783668916	3.76550987992492	-0.66202553729588	0.139948439526603	0.415963916015219
Merged-chr11-33115018-3	chr11	33114916	33115116	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32384.0	NM_008005	14172.0	Mm.339812	NM_008005	ENSMUSG00000057967	Fgf18	D130055P09Rik|FGF-18	fibroblast growth factor 18	protein-coding	3.18787877926477	3.02193996399106	3.29618964154986	3.44277041364181	2.68297088085285	3.18162671220848	3.11892636726591	2.87040237197469	-1.14621413060946	0.0760513946312016	0.297857500740305
Merged-chr4-74252691-4	chr4	74252565	74252765	+	993.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 1 of 20)	intron (NM_001356561, intron 1 of 20)	786.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	4.64809622303786	4.98763799393733	5.28553131630972	5.06984007832879	4.93525478042616	4.95740629850281	5.11274236123085	5.36247753942018	0.151753758153755	0.651371402409232	0.853926973977102
Merged-chr7-127410733-3	chr7	127410626	127410826	+	896.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3904.0	NM_001167832	233893.0	Mm.297097	NM_146203	ENSMUSG00000045757	Zfp764	8030466O12Rik	zinc finger protein 764	protein-coding	3.45433560193924	3.5661079722052	3.33411813423939	3.46665518232965	3.60511501646283	3.68161932027862	3.49763775556119	3.66487365569556	0.497215330401978	0.304276973884175	0.616970451347472
Merged-chr4-141148559-4	chr4	141148456	141148656	+	907.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 1 of 9)	CpG	634.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	4.90328881010702	4.76696854691296	4.52994443457354	4.63976204742302	4.33219062171767	4.74793171727851	4.3250196138111	5.05273940073548	-0.148326672803164	0.705663934059713	0.881790297238375
Merged-chr2-79677839-1	chr2	79677739	79677939	+	915.0	f0_balb.idr	Intergenic	Intergenic	-29941.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	2.9959158471547	2.73408686002369	2.77383468703512	3.09130307556801	2.69491881498128	2.44693415731537	2.49871000978432	2.5761446615717	-1.80650238661387	0.0152670384038455	0.106194911223231
Merged-chr2-180709470-3	chr2	180709370	180709570	+	890.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289651)	promoter-TSS (NM_001289651)	529.0	NM_177852	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	3.4974398855269	3.54163382295085	3.54958789768105	3.36437879986421	3.43312094455913	3.44136164674581	3.31728640685717	3.38590191133731	-0.29936838624499	0.5534307350045	0.80019188459821
Merged-chr10-93444576-4	chr10	93444470	93444670	+	848.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8826.0	NM_001313897	16993.0	Mm.271071	NM_008517	ENSMUSG00000015889	Lta4h	-	leukotriene A4 hydrolase	protein-coding	3.73760240066812	3.83773732744056	4.25058943448718	4.13440451538581	4.0573326369875	3.53314229958734	3.97950138909222	3.99437287012833	-0.267669366575738	0.577137991581568	0.813924639099529
Merged-chr8-26123343-3	chr8	26123240	26123440	+	675.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357292, intron 2 of 6)	intron (NM_001357292, intron 2 of 6)	3530.0	NM_001357294	77733.0	Mm.291906	NM_029965	ENSMUSG00000013878	Rnf170	6720407G21Rik|AI481227	ring finger protein 170	protein-coding	3.7985824413294	3.51165613953942	3.63710464763753	4.0663870868686	3.92032432565824	3.63328887459915	3.62349636204858	4.14835045102165	0.194556774234251	0.702109890460205	0.880010098877197
Merged-chr14-20674272-4	chr14	20674192	20674392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168273)	promoter-TSS (NM_001168273)	-29.0	NM_172596	218811.0	Mm.173119	NM_172596	ENSMUSG00000039367	Sec24c	2610204K03Rik|mKIAA0079	Sec24 related gene family, member C (S. cerevisiae)	protein-coding	7.22124600812733	7.39810412405597	6.90059265524426	7.13634924974857	7.51006119970327	7.23674571769536	7.32033117984666	6.92360244222048	0.128510464196901	0.550272721388094	0.79852929736357
Merged-chr5-124425833-6	chr5	124425740	124425940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359978)	promoter-TSS (NM_001359978)	117.0	NM_001081203	243272.0	Mm.23879	NM_145631	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch 1	protein-coding	6.53335902564138	6.90574874602735	6.72352099355324	6.58271619915618	6.75475173437337	7.07611962689766	6.21813393906651	6.85696292983586	0.097354456678405	0.693395770033082	0.875305395019895
Merged-chr17-47737034-4	chr17	47736932	47737132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161723)	promoter-TSS (NM_001161723)	-5.0	NM_001161722	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	6.94906858322006	6.84624021941623	6.60277782128856	6.62482166639016	6.99903092268963	6.96526854989095	7.12342711781944	6.85360091228934	0.327961844520651	0.106784999214151	0.360348218742401
Merged-chr7-98322646-4	chr7	98322528	98322728	+	939.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1420.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	5.15365716581039	5.17578621742231	4.86645412974592	4.82911603440284	4.58588407445513	5.03971905094828	4.4743167325425	4.6273223221122	-0.648792742349634	0.0695376013539148	0.282077672922454
Merged-chr10-117944088-4	chr10	117943983	117944183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045342, intron 3 of 3)	MTC|LTR|ERVL-MaLR	18624.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	5.07360105008308	5.45188821894863	5.33974821820643	5.42330177487558	6.40388419301634	5.90220646840801	6.21003892208746	6.41177707601865	1.46916491234245	7.71125691425266e-08	3.37564302521273e-06
Merged-chr19-47242445-4	chr19	47242352	47242552	+	872.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163480, intron 3 of 5)	intron (NM_001163480, intron 3 of 5)	13609.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	4.03430432212079	3.74316428287	3.54595360000681	4.02954093503277	4.00470547697236	3.8491725459559	4.14456579464433	4.07682769413815	0.432388629307342	0.347743892649403	0.655579577680152
Merged-chr8-34744879-4	chr8	34744782	34744982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62728.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	4.3082740907033	4.06636861263042	4.84919904782017	4.38883816921709	6.6403392612369	6.07858007873462	6.65227003862339	5.69480962039338	3.41054374850804	5.74962102564119e-08	2.59842714275628e-06
Merged-chr11-43600094-4	chr11	43599976	43600176	+	899.3875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008375, intron 1 of 3)	intron (NM_008375, intron 1 of 3)	1486.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	3.9306624020771	3.84077348730208	4.23510508920313	4.47638591092122	4.45588635844801	4.21722649399908	4.17088124542516	4.58451042203308	0.497422659185757	0.266598755405683	0.578235316865616
Merged-chr4-117682155-3	chr4	117682025	117682225	+	910.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023178)	promoter-TSS (NM_023178)	100.0	NM_023178	66233.0	Mm.29142	NM_023178	ENSMUSG00000009640	Dmap1	1500016M21Rik|DNMAP1|DNMTAP1|Dmtap1|mKIAA1425	DNA methyltransferase 1-associated protein 1	protein-coding	3.40228595952371	3.61600743743838	3.27491126749796	3.25332684627505	3.80718015338092	3.57842530218161	3.70884088586128	3.72295028560357	1.04580493607515	0.0340597817968818	0.182182342612505
Merged-chr16-18249517-4	chr16	18249427	18249627	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011239)	promoter-TSS (NM_011239)	644.0	NM_001081000	15547.0	Mm.271798	NM_008307	ENSMUSG00000022721	Trmt2a	Htf9c	TRM2 tRNA methyltransferase 2A	protein-coding	5.09795851864349	5.10155684617418	5.34881881520706	5.13421711565702	5.21165451800441	5.01222446056817	5.59838278238549	5.34507703486897	0.25421169831089	0.407475961201067	0.703734930905293
Merged-chr15-58818777-6	chr15	58818716	58818916	+	896.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175212, intron 1 of 6)	intron (NM_175212, intron 1 of 6)	4611.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	4.37809464396841	3.9197993196736	4.48637982951589	4.14762899078772	3.85575179207424	3.94599506436493	4.15687316372423	3.70125027902355	-0.848977411699564	0.0624394190105309	0.264544804345272
Merged-chr5-112276521-4	chr5	112276439	112276639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001326590)	promoter-TSS (NM_001326590)	-152.0	NM_001326590	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	8.63519296728414	8.9579557751134	8.88513533242688	8.3968076246976	9.01571443667964	9.22116006091794	9.19815727899542	8.86419971657606	0.434178711019019	0.0177120836876207	0.117880168751861
Merged-chr4_GL456216_random-34502-1	chr4_GL456216_random	34402	34602	+	615.0	f0_c57.idr	intron (NM_001033326, intron 5 of 6)	CpG-10796	18621.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	2.37976115951485	2.32660058071986	2.37995690239492	2.0390819596017	3.16408787892552	2.88798351651945	3.00537927940047	3.52876216986099	7.11368609475647	6.1548015986829e-12	5.78722091139565e-10
Merged-chr2-117327123-4	chr2	117327022	117327222	+	987.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 2 of 16)	intron (NM_011246, intron 2 of 16)	15755.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	4.89362931947959	4.70823148472451	4.53538258824463	4.75818530094141	4.9373909000743	4.99572759173933	4.76295163425032	5.05387992489524	0.424358105107073	0.198564319496192	0.500110034939296
Merged-chr13-52580579-4	chr13	52580489	52580689	+	938.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2848.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	4.61336452214382	4.77662722967108	4.61409178350258	4.96941630226723	4.66033186920772	4.82855544678814	4.50802812354667	4.90623918493529	-0.0811521762631169	0.819249171435575	0.930749804852404
Merged-chr4-74357740-4	chr4	74357640	74357840	+	970.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 15 of 20)	intron (NM_001356561, intron 15 of 20)	105861.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	5.14674183761643	5.04969989237782	4.9451163230299	5.43575263146858	4.83291383150355	4.84081842972447	5.18265647148073	5.08017437514505	-0.360385907096062	0.276575935798555	0.588579924847301
Merged-chr19-46392300-4	chr19	46392182	46392382	+	689.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016860, intron 1 of 10)	B3|SINE|B2	3453.0	NM_016860	54130.0	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	3.77810408033906	3.53991386009553	3.97544597079397	3.60439691398413	4.03958362470828	3.8991527368042	4.04478337794333	3.82849961812344	0.677236876927061	0.135141433309698	0.409283505651115
Merged-chr10-37336974-1	chr10	37336874	37337074	+	898.0	f0_balb.idr	Intergenic	Intergenic	-198048.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	4.30070722460922	4.19995203200656	4.50121446915595	4.52163640016638	4.22931930518243	4.1347586803661	4.14669554012508	4.16187392593348	-0.550596858978593	0.163765344642044	0.453530988494127
Merged-chr13-4279421-2	chr13	4279324	4279524	+	666.25	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_013777)	promoter-TSS (NM_013777)	-25.0	NM_013777	622402.0	Mm.27447	NM_013777	ENSMUSG00000021211	Akr1c12	AI266976|Akra	aldo-keto reductase family 1, member C12	protein-coding	2.59819885119936	2.68138406909942	2.83451440408552	2.32999194613019	3.2049199615224	3.38808389070662	3.445930151263	3.31738689559336	3.69753299298213	2.64909280000319e-07	1.03946955022837e-05
Merged-chr1-60940782-4	chr1	60940687	60940887	+	956.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31762.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	4.97911345822756	4.94000748072446	4.33961797067257	4.57603190360914	4.75867233516509	5.01873401521652	4.67710205650593	4.65620344954106	0.112904895086041	0.760412232289882	0.906091991304471
Merged-chr8-22963267-4	chr8	22963168	22963368	+	852.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11568.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	4.08314569035191	4.54246500769602	4.32344802423051	4.16806559435379	4.20071470812891	4.3122315927147	4.76886551597271	4.08137867172705	0.185345915374309	0.66297601459793	0.860346663968351
Merged-chr4-126815076-4	chr4	126814961	126815161	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035525, intron 4 of 23)	intron (NM_001035525, intron 4 of 23)	61291.0	NM_001035526	100317.0	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	5.41693312603349	5.82790043446893	6.15527574448836	6.00945437270442	5.28547341899467	5.33099128496555	5.16064034352679	5.4140815014583	-1.00355736933438	0.000724655828835609	0.0104097431363652
Merged-chr8-72006079-4	chr8	72005955	72006155	+	875.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024444, intron 2 of 12)	intron (NM_024444, intron 2 of 12)	3571.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	4.10442602384291	3.80780394501681	3.90845047722844	3.7359933035292	4.18013822885061	4.2305007949116	3.99332089261376	4.31176510732445	0.801622079941854	0.0576800647037289	0.252068780036244
Merged-chr1-105663857-4	chr1	105663773	105663973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029349)	promoter-TSS (NM_029349)	12.0	NM_029349	227446.0	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|Relch|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	7.6905619031417	7.81339318328442	7.48507677784294	7.43752892549037	7.84459214453454	8.06082418958285	7.77246734364153	7.78990457817417	0.340107348846159	0.0619238106179349	0.2632705122431
Merged-chr6-137404422-3	chr6	137404309	137404509	+	822.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 12 of 26)	intron (NM_011216, intron 12 of 26)	-6312.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	4.17273089202152	4.951878400205	4.38173837038058	3.86443364281897	3.645963405969	3.81250329640106	4.0123759401579	3.68575959271805	-1.61546199826988	0.00176873145974824	0.0212610245012111
Merged-chr19-44293974-4	chr19	44293877	44294077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009128, exon 1 of 6)	5' UTR (NM_009128, exon 1 of 6)	301.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	6.04927936110985	6.05807533340693	6.15513763134226	6.28928914894653	6.18540712636876	6.18219877880202	6.35998072997205	6.22879721474164	0.130308282508468	0.569310289100931	0.809366519988776
Merged-chr9-89198521-4	chr9	89198435	89198635	+	762.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007534)	promoter-TSS (NM_007534)	-738.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	4.5438467024	4.86838371528316	4.54456202243954	4.55274782836892	4.51772111955546	4.71782647898629	4.52386847523004	4.6224030367748	-0.0873477698037351	0.805864769600854	0.925317663285668
Merged-chr1-92251084-4	chr1	92250966	92251166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-70725.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	5.55352123925995	5.6369872247544	5.52417366996322	5.93310604504809	6.5066421141761	5.84718287420657	6.13094963873297	6.06191836863064	0.75939403593741	0.00703397511120997	0.0610602858984136
Merged-chr18-68220453-4	chr18	68220342	68220542	+	971.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	L1M4b|LINE|L1	-7504.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	5.18390873694806	4.79255689507446	5.24709764439326	5.31660663718567	5.12222836955098	5.29402137807639	5.30847097291181	5.35941704257083	0.200227540669148	0.520759706648758	0.780969495386975
Merged-chr3-14886491-8	chr3	14886379	14886579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009801, exon 1 of 7)	5' UTR (NM_009801, exon 1 of 7)	191.0	NM_009801	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	5.32375269898144	4.41051553622393	5.15653784704261	5.01256787059547	4.72355047485739	5.10164843177908	4.79145516981183	5.15293249248388	-0.123902376696301	0.74250838593026	0.898494026733066
Merged-chr7-47015899-4	chr7	47015809	47016009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-7495.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	6.68915260936477	6.43974566291035	6.70444044304661	6.56155427227684	6.49300095006961	6.0650985804028	6.78993689112955	6.00673950418927	-0.312578974273331	0.225738563956664	0.534241429840117
Merged-chr2-52785258-4	chr2	52785164	52785364	+	794.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43115.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	3.61719023342756	3.93527446129843	3.78629648318283	4.2199456766146	3.66606261332362	3.54039022112362	4.05048259929974	3.97920885923527	-0.278428023549245	0.579524747048335	0.815384290230806
Merged-chr17-71102679-4	chr17	71102581	71102781	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 24 of 36)	intron (NM_001083934, intron 24 of 36)	-80851.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	5.29886515136171	5.18342592260277	4.76836261294539	5.42252732076384	5.26619024521815	5.31981027039651	5.01943979948032	5.23681722187137	0.0160336616504383	0.960435221413476	0.985883800393479
Merged-chr15-78589071-4	chr15	78588978	78589178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7489.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	8.38225905258273	8.22643142725277	8.71553677886279	8.33996586552677	8.10580983202334	8.18047341818384	8.29680037611632	7.99738239485962	-0.352101516685224	0.0467633778271189	0.222349396817401
Merged-chr8-84042630-3	chr8	84042576	84042776	+	645.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016671)	promoter-TSS (NM_016671)	-101.0	NM_016671	50931.0	Mm.38386	NM_016671	ENSMUSG00000005465	Il27ra	CRL1|IL-27R|Tccr|WSX-1|Wsx1|zcytor1	interleukin 27 receptor, alpha	protein-coding	3.90368020632131	3.78896457404225	3.64287522295435	3.57229960105381	4.03794952367358	3.92672664443488	3.50974830094152	4.03619508052816	0.502812088952423	0.289799643961023	0.601880510548017
Merged-chr3-129724197-3	chr3	129724103	129724303	+	823.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010113, intron 6 of 23)	intron (NM_010113, intron 6 of 23)	883.0	NM_001310737	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	2.77777459434976	2.57683673029498	2.90733022819466	2.89091282203982	2.95211896456888	2.95216045357383	2.8968939701886	3.18100648645433	0.866392633970472	0.168093732437462	0.460076653556141
Merged-chr7-135652956-4	chr7	135652851	135653051	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015548)	promoter-TSS (NR_015548)	-637.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	5.37706132893327	5.15344856940569	5.1068300895699	5.08543851587157	5.1583327565617	5.17790375851602	5.01362885664302	5.34683953661208	0.00279981420029322	0.992584408746416	0.997258162727074
Merged-chr2-151741286-4	chr2	151741192	151741392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305244)	promoter-TSS (NM_001305244)	18.0	NM_212446	228769.0	Mm.146984	NM_144889	ENSMUSG00000032869	Psmf1	AW048666|BC012260|PI31	proteasome (prosome, macropain) inhibitor subunit 1	protein-coding	5.8153812838156	5.58508207046971	5.50613062243388	5.72760959323902	5.7489975721934	5.79340938432684	5.76383114419813	5.71714352127239	0.143100477880807	0.57531551837695	0.812959248839691
Merged-chr17-34027363-4	chr17	34027291	34027491	+	967.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008202)	TTS (NM_008202)	664.0	NM_013543	14979.0	Mm.275452	NM_013543	ENSMUSG00000073422	H2-Ke6	D17H6S112E|H-2Ke6|Hsd17b8|Ke-6|Ke6|Ring2	H2-K region expressed gene 6	protein-coding	4.9940484866505	4.7697710954111	4.58733975478118	4.67750255805828	5.51205151575722	5.44762137828126	5.10228710222417	5.09231304072605	1.0578659484536	0.0011000750970634	0.0145084760670513
Merged-chr2-5845108-6	chr2	5845054	5845254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356501)	promoter-TSS (NM_001356501)	23.0	NM_001356502	98828.0	Mm.181490	NM_133837	ENSMUSG00000039128	Cdc123	AA959893|G431001I09Rik	cell division cycle 123	protein-coding	5.39380317862928	5.65528784051741	5.50775216701135	5.17030588361356	5.49661413753967	5.68121311822989	5.30783204625914	5.42015996981243	0.0912998153118495	0.755727526161001	0.903923473017895
Merged-chr13-81041829-4	chr13	81041738	81041938	+	907.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	ORR1E|LTR|ERVL-MaLR	77764.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	4.54638744064326	4.19832353761919	4.33249187059883	4.78572828032255	4.75819365884936	4.41397087193249	3.94316737872546	4.82583498978123	0.0887768785068919	0.843358696996648	0.940504575562964
Merged-chr10-30797095-3	chr10	30797015	30797215	+	998.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	MTB_Mm|LTR|ERVL-MaLR	6211.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	4.00647473935249	4.02213026681211	4.00710198929571	3.99644487216812	3.44706447778669	3.51790473132876	3.85138232050929	3.70959286393408	-1.12001837155697	0.0177621833393966	0.118114204775309
Merged-chr16-44139160-4	chr16	44139064	44139264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028108)	promoter-TSS (NM_028108)	95.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	7.4540919733223	7.64534288431689	7.64105794532819	7.2568278035612	7.37981591518019	7.66070819421605	7.30932142380109	7.39168985620213	-0.0814828892222801	0.674689696319237	0.866288502642047
Merged-chr5-104021927-4	chr5	104021837	104022037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053262)	promoter-TSS (NM_053262)	-141.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	7.89220289427079	8.01630690749225	7.92160968583599	7.92969873939294	7.5372785674689	7.89589901361378	7.53400240267592	7.49996355240617	-0.416468729722566	0.0172738170226086	0.115917132257213
Merged-chr7-142386296-2	chr7	142386200	142386400	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009983, intron 1 of 8)	intron (NM_009983, intron 1 of 8)	1570.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	3.27959639479104	3.22354312605419	3.50725654500087	3.00826749598024	3.5301668892032	3.33087363376901	3.32790272446399	3.82489013399041	0.919062332265546	0.09571501989966	0.338781670882044
Merged-chr17-14943154-4	chr17	14943045	14943245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083880)	promoter-TSS (NM_001083880)	-21.0	NM_175173	71682.0	Mm.122698	NM_175173	ENSMUSG00000046991	Wdr27	0610012K18Rik	WD repeat domain 27	protein-coding	8.00934013212197	7.9471214364981	8.00388750144074	8.08031299487156	8.22529868872139	8.13998426216251	8.08813398052591	7.83939420841812	0.0915786650780531	0.581873637938096	0.816420227529328
Merged-chr4-83433064-4	chr4	83432969	83433169	+	929.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029949, intron 3 of 8)	intron (NM_029949, intron 3 of 8)	15345.0	NM_029949	77634.0	Mm.271985	NM_029949	ENSMUSG00000028483	Snapc3	1810020H02Rik|4930558A07Rik|5031401C21Rik|AI414457|E030018J20Rik	small nuclear RNA activating complex, polypeptide 3	protein-coding	4.77743676008527	5.041106593027	5.26383700378336	5.34286680721118	4.24046607095728	4.55202690694208	5.09611368606735	4.81382194028973	-0.85107257020726	0.0290974150336957	0.163990880777019
Merged-chr17-65635907-4	chr17	65635787	65635987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3869.0	NM_153519	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	7.48902571387854	7.94578834410037	7.82931126497213	7.35403667013327	7.21963781182049	7.72205417499944	7.29581702935618	6.79975138257031	-0.499191857488579	0.0423528866995833	0.208813712336678
Merged-chr16-11455925-4	chr16	11455857	11456057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	50309.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	6.60399742450623	6.12965198050663	6.69730499957804	6.82299957334416	6.62381821401433	7.03898353682402	6.84142056667731	6.60044649405454	0.265638670716208	0.27938575189435	0.591495502480744
Merged-chr12-119470450-4	chr12	119470338	119470538	+	882.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	27028.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	4.18439370117182	4.26647793570653	4.23425141140694	4.57001125002097	4.29172282364433	4.74101750514766	4.55066576427153	4.27911097389723	0.306529018067979	0.448036065984819	0.73332468018769
Merged-chr17-34640930-4	chr17	34640819	34641019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3964.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	6.07401690965288	5.95992226150698	5.81326186051727	5.63677237860094	5.87414578320387	6.24851882328582	5.83097616662046	5.54044252474243	0.0406994495068098	0.884159113280129	0.956393500663592
Merged-chr19-3767905-6	chr19	3767924	3768124	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001167886, exon 2 of 11)	5' UTR (NM_001167886, exon 2 of 11)	603.0	NM_001167885	225888.0	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	4.4221897757593	4.47778024631661	4.5822713866831	4.08135458142854	4.34372726540073	4.67668005883389	3.9565054581936	4.68663898551364	0.118578916909382	0.781998203529664	0.915220002779407
Merged-chr5-19901851-4	chr5	19901736	19901936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 2 of 22)	MIRb|SINE|MIR	-5682.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	5.19850364412802	5.11445424433649	5.44798942008626	5.71701279407066	5.37189732203454	5.47435361514466	5.55355189399897	5.67538262449997	0.184075592798298	0.54995435813605	0.798230041960969
Merged-chr3-36060334-4	chr3	36060266	36060466	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30|LTR|ERV1	-5613.0	NM_172678	229211.0	Mm.260997	NM_172678	ENSMUSG00000027710	Acad9	2600017P15Rik|4732402K02|C630012L17Rik|NPD002	acyl-Coenzyme A dehydrogenase family, member 9	protein-coding	4.06037163483322	3.85279153846611	4.29939766580941	4.11600799795986	3.83846694061653	3.57503921012597	3.69627197106021	3.76448907282853	-1.03462589353126	0.0259940987894342	0.152445740935416
Merged-chr17-23187377-4	chr17	23187272	23187472	+	839.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357697, intron 3 of 5)	intron (NM_001357697, intron 3 of 5)	5856.0	NM_009555	22700.0	Mm.437934	NM_009555	ENSMUSG00000002617	Zfp40	CTfin12|NTfin12|Zfp-40	zinc finger protein 40	protein-coding	3.69034292552362	3.99050183268367	3.6907957319423	3.9139658017663	4.31471105325691	4.29109222091137	4.48697294842271	4.07048722650825	1.19306265047727	0.00600462017144962	0.0542527112444291
Merged-chr9-75436124-4	chr9	75436030	75436230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5394.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	7.90450586479991	8.22036155337386	8.01850342145534	7.94163954752639	8.2223983026062	8.06819124275707	8.251215837806	7.97898495594919	0.143932124447181	0.39463508545031	0.693682147756976
Merged-chr6-115836076-4	chr6	115835976	115836176	+	748.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110506, intron 1 of 8)	ORR1A3|LTR|ERVL-MaLR	2336.0	NM_001110506	212516.0	Mm.333333	NM_198603	ENSMUSG00000030321	Efcab12	BB124106	EF-hand calcium binding domain 12	protein-coding	3.7409788652526	3.64306123481859	3.51959805533691	3.66780307714494	3.77119560768905	3.91163040255288	3.4460159527992	3.97128982567018	0.426070329715065	0.373739432643421	0.677211638825943
Merged-chr3-107357000-3	chr3	107356924	107357124	+	922.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23735.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	4.18379083188547	4.08697729472455	4.2275727344426	3.74573658078473	4.1901242821837	3.89664288395917	4.02828359398762	4.3458476930161	0.182702104414396	0.679438406267614	0.868431457681343
Merged-chr19-3935969-4	chr19	3935882	3936082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019449, intron 2 of 10)	intron (NM_019449, intron 2 of 10)	796.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	6.42497660527293	6.13635636967418	6.13435778821151	5.79710296845597	6.38301111570912	6.18183928017828	6.12321461668442	6.31997251512604	0.210954703199732	0.404754288980036	0.701827175038001
Merged-chr8-106697227-3	chr8	106697088	106697288	+	818.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173037, intron 5 of 17)	MTD|LTR|ERVL-MaLR	14120.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	3.17860543257788	3.06402910904867	3.12190634182392	2.95857641955379	2.99828094969927	3.10880067445663	3.05126776430534	3.23187923895421	0.0898532343727109	0.873563544926798	0.952619493264257
Merged-chr6-88842215-4	chr6	88842120	88842320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030251)	promoter-TSS (NM_030251)	-285.0	NR_155424	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	8.57691621364416	8.92731907458339	8.87755897616329	8.5696284633918	8.81918518370615	9.21623773155445	8.89334197411385	8.68806726053646	0.213578728191355	0.238190158028687	0.548588812759228
Merged-chr17-48043718-4	chr17	48043637	48043837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-5444.0	NM_029689	76651.0	Mm.76918	NM_029689	ENSMUSG00000094928	1700122O11Rik	-	RIKEN cDNA 1700122O11 gene	protein-coding	6.13039375632616	6.18439290519349	6.38951289804461	6.09381678586927	5.52980978263267	5.55086988606299	5.64706187864204	5.80179087008605	-0.909372650009597	0.000312107499147843	0.00523456637178235
Merged-chr9-110464198-4	chr9	110464083	110464283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360306, intron 1 of 9)	intron (NM_001360306, intron 1 of 9)	12511.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	6.24043600918137	5.97752999951182	6.18719210316307	6.46957246775477	5.88407436457688	5.57110134398893	5.58205660297687	5.79566743371277	-0.820688320690585	0.00179729309694942	0.021515224579173
Merged-chr19-21441036-3	chr19	21440912	21441112	+	970.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_010266, intron 1 of 13)	L1MC4|LINE|L1	31649.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	3.95582719456325	4.21861495387529	4.52381107062307	4.42027567258554	4.49191081310608	4.1950947299244	4.6453663860059	4.52082961995184	0.397714628064318	0.326788262172773	0.638357246511911
Merged-chr15-100543902-4	chr15	100543774	100543974	+	960.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355497, intron 2 of 15)	IAPEY3-int|LTR|ERVK	8134.0	NM_033476	21422.0	Mm.219040	NM_033476	ENSMUSG00000009733	Tfcp2	CP-2|CP2|D230015P20Rik|LBP-1c|LBP-1d|LBP1|LSF|Tcfcp2|UBP-1	transcription factor CP2	protein-coding	5.2351664951608	5.22115691434721	4.97062150736113	4.47672132164932	5.44200461049846	5.34848304003733	4.98270614167887	5.26197688822984	0.52501150307303	0.139582832997691	0.415444970518195
Merged-chr16-49819702-3	chr16	49819619	49819819	+	607.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-35935.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	3.48752116561013	3.21523928379473	3.21817203817713	3.34723280374172	3.27190684248535	3.38875627603048	3.32053965910723	3.09127454416514	-0.185875961469788	0.730071111370338	0.892887422737009
Merged-chr5-142909603-2	chr5	142909514	142909714	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-2860.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	6.20188396867844	5.99424661723661	5.81037679181221	5.76401281869414	6.05809670958338	6.15376559314995	6.15239423190956	6.30610327226851	0.352782687041906	0.151493885769179	0.435174272374365
Merged-chr14-122513202-2	chr14	122513102	122513302	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 1 of 24)	intron (NR_153443, intron 1 of 24)	-21126.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	3.08686030700877	3.0883281548983	3.36538109809509	2.79417609753262	3.3234518456125	2.76040116301594	3.24769699190364	3.31238326582556	0.330932262313023	0.606825365374157	0.829617829632128
Merged-chr10-118596157-4	chr10	118596045	118596245	+	961.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39620.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	5.4889749297527	5.2557829580625	4.87784384793044	4.99216380565326	5.54240662678205	4.93183743123699	5.62795047170298	5.23227272451201	0.367113740243667	0.277841940235042	0.589858344900601
Merged-chr2-71866771-3	chr2	71866664	71866864	+	976.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 3 of 3).2	intron (NR_039557, intron 3 of 3).2	-6460.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	3.38173516346191	3.56099982182054	3.45089706273834	3.60976434671328	4.23401859898638	3.97795738184648	4.10365323454199	4.07976600543814	1.69056649924302	0.000341688859831547	0.00564555973861413
Merged-chr5-138187888-4	chr5	138187764	138187964	+	900.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009315)	promoter-TSS (NM_009315)	329.0	NM_178612	66455.0	Mm.24592	NM_178612	ENSMUSG00000036968	Cnpy4	2610019P18Rik	canopy FGF signaling regulator 4	protein-coding	4.00304258661193	4.19870951458847	4.10050745920953	4.07580997630984	4.05864205277031	4.27115559323324	4.08280866819383	4.00130197481236	0.0194897104141971	0.961822889745155	0.98629351085777
Merged-chr6-100416207-4	chr6	100416110	100416310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111190.0	NR_040525	73395.0	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	5.49688217744151	5.49100834568698	6.00076288279242	6.11508903569359	5.69673948531718	5.27051606943786	5.68470025132826	5.75828209706408	-0.332005267687637	0.27736387060079	0.589503820408887
Merged-chr2-164794489-4	chr2	164794400	164794600	+	920.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133240, intron 5 of 5)	intron (NM_133240, intron 5 of 5)	8479.0	NM_133924	101113.0	Mm.295647	NM_133924	ENSMUSG00000050373	Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding	4.72683383917008	4.96575268392013	4.57038582008187	4.5120611273225	5.04255589321599	4.36833790231253	4.46393776299926	4.60855922901875	-0.076635625777703	0.845515572709789	0.94153555929146
Merged-chr8-83772835-3	chr8	83772740	83772940	+	698.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31529.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	3.30485512533583	3.24880861908238	3.76382714081313	3.41327846477325	3.25542051835561	3.59341921232354	3.29345920049379	3.42043472006211	-0.179374028043901	0.73950598878246	0.897328618744404
Merged-chr2-92253987-3	chr2	92253869	92254069	+	951.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109690, intron 3 of 15)	intron (NM_001109690, intron 3 of 15)	32407.0	NM_001109690	192285.0	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	4.17150697249539	3.95329784703734	4.0459396235956	4.50745967899325	3.64735222002346	3.62325745508771	3.61869299434811	3.43503309790014	-1.82155291928117	0.000261865545749069	0.00453769829587898
Merged-chr2-132282215-4	chr2	132282100	132282300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	-3739.0	NM_001291039	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	5.34616590605217	5.47983496144217	5.57871056045715	5.77585445915301	5.17865487751579	5.32210253252786	5.93247086679019	5.81476342693152	0.0501705058098212	0.874987044841529	0.952974613103639
Merged-chr1-105992649-3	chr1	105992550	105992750	+	850.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	2244.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	3.17693333820336	3.25742715393356	3.39563184864442	3.04342895294856	2.81077521514676	3.09716050195795	3.52081362258542	2.9845781314831	-0.349621197628508	0.573815189876628	0.811973307930812
Merged-chr9-106170887-4	chr9	106170812	106171012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029896)	promoter-TSS (NM_029896)	-17.0	NM_029896	77305.0	Mm.265125	NM_029896	ENSMUSG00000020257	Wdr82	9430077D24Rik|CDW5/WDR82	WD repeat domain containing 82	protein-coding	6.93161965009909	7.15547673573555	6.3943617051838	6.93420836550363	7.24527375636405	7.21166585817772	7.14871803894348	7.23291583893884	0.441438480356039	0.0431376885567622	0.211349188035484
Merged-chr14-70889950-4	chr14	70889847	70890047	+	876.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008115)	promoter-TSS (NM_008115)	-160.0	NM_001302095	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	4.85429607685348	4.81129639908866	4.82077577141159	4.83623309356153	4.49489602051942	4.3919924042841	4.68962225909041	4.6702035688845	-0.569757144590354	0.0974627731081131	0.34204233936803
Merged-chr4-138325760-4	chr4	138325696	138325896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026880, intron 1 of 7)	CpG	500.0	NM_026880	68943.0	Mm.18539	NM_026880	ENSMUSG00000028756	Pink1	1190006F07Rik|AU042772|AW557854|BRPK|mFLJ00387	PTEN induced putative kinase 1	protein-coding	6.61729298928797	6.52285890228819	6.55473752542572	6.35612168191296	6.70234207647878	6.7631314462113	6.75768249007785	6.62916812525124	0.303737564437827	0.139664926471229	0.415585042485499
Merged-chr16-91485833-2	chr16	91485733	91485933	+	831.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_010508, intron 1 of 10)	intron (NM_010508, intron 1 of 10)	618.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	2.86657627387492	3.13730052413696	3.19773107034371	3.07014963343178	3.36807402246425	3.1857166183331	3.12660692088269	3.55075306463777	0.924833545197645	0.104054562744437	0.354530645808545
Merged-chr6-88053912-4	chr6	88053819	88054019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8649.0	NM_009005	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	5.4573782223271	5.97299270107763	5.84470155786873	5.92110347130092	5.55231789965546	5.29908926855605	5.85815063709998	5.42409766113735	-0.449130002856055	0.120202458960029	0.383809924022786
Merged-chr4-155894426-4	chr4	155894328	155894528	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207223, intron 1 of 24)	intron (NM_207223, intron 1 of 24)	2553.0	NM_207223	140500.0	Mm.219591	NM_207223	ENSMUSG00000029033	Acap3	Centb5|Kiaa1716-hp|mKIAA1716	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding	5.52950990857685	5.45267506945618	4.93479261721702	5.44926870737858	4.48552809982791	4.86807540009824	5.24098015339559	5.00517695145307	-0.84637712383368	0.0173842855916494	0.116427932266467
Merged-chr9-25592277-4	chr9	25592175	25592375	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 6 of 7)	intron (NM_026189, intron 6 of 7)	110678.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	5.76968813229305	5.45285456226892	5.93016812465301	5.87429690078009	5.91857175871407	5.30559977437787	5.87837652873397	6.00861715733091	0.0648708980936237	0.822767563942277	0.932185203682946
Merged-chr15-100732799-4	chr15	100732695	100732895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045781)	promoter-TSS (NR_045781)	-58.0	NR_045782	619313.0	Mm.123436	NR_045781	ENSMUSG00000116504	I730030J21Rik	-	RIKEN cDNA I730030J21 gene	ncRNA	7.25355460263269	7.37792717353747	7.14542026271783	7.10464953231199	7.0226497955497	6.9540814422364	7.28953410746815	6.8881713865531	-0.235762128362242	0.233268656571067	0.542875602881884
Merged-chr4-134460465-4	chr4	134460375	134460575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-7845.0	NM_019641	16765.0	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	5.01870081166537	5.16108154939259	5.36091131451297	5.45533259622419	5.0295611532731	4.63848172180584	5.03016637724278	5.43602806737881	-0.381070956620012	0.265367008303042	0.577001515467012
Merged-chr9-99171358-4	chr9	99171266	99171466	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31155.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	4.59982476503156	4.58222211396395	4.60055153047536	4.71593632627311	4.86247283187143	4.40006858595908	4.96747471257523	4.95782836688318	0.395068202175754	0.264726740359887	0.576566406596513
Merged-chr9-35051082-2	chr9	35050982	35051182	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 9 of 10)	intron (NM_009178, intron 9 of 10)	-65646.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	3.73777274795281	3.58785215305985	3.41732072960398	3.35618488729424	3.57207423295168	3.59244552861089	3.5196562296198	3.73604750244963	0.269969393254759	0.583925147679307	0.817485282428486
Merged-chr5-145116535-4	chr5	145116430	145116630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	intron (NM_023142, intron 1 of 9)	2274.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	7.9701447955915	8.16564565057373	7.80840315535486	7.96458540340746	8.12562984759304	7.97007644648723	8.17789390796466	7.97994099559787	0.10797473984095	0.5190995791326	0.77984451962357
Merged-chr11-119354980-4	chr11	119354886	119355086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178743)	promoter-TSS (NM_178743)	524.0	NM_018822	27029.0	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	6.05191961510628	5.67113101012008	5.82271562571143	5.76930394838162	5.58562603396092	5.46841261540633	5.39339303811247	6.00985624702217	-0.319776462314596	0.259560594326497	0.571396571681358
Merged-chr12-91765802-4	chr12	91765683	91765883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	B4A|SINE|B4	20653.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	5.05814444198207	4.89289756456222	5.12453697929719	5.34980224290357	5.21828501614474	4.75835471741438	5.03447215713133	5.2132631202138	-0.102720703537546	0.755380774468242	0.903681605194713
Merged-chr11-58009335-2	chr11	58009235	58009435	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028451, exon 1 of 19)	exon (NM_028451, exon 1 of 19)	271.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	3.78449003482528	3.77763299363387	3.6181793054499	3.73164975079936	3.97692000707262	4.05464175385979	3.76989350756271	4.06360871773037	0.689408470073982	0.11710679843327	0.378565658581541
Merged-chr1-172552925-3	chr1	172552812	172553012	+	859.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-2106.0	NR_040558	71319.0	Mm.123774	NR_040558	ENSMUSG00000085184	4933439K11Rik	-	RIKEN cDNA 4933439K11 gene	ncRNA	3.54309651402928	3.22867804284501	3.25804781028257	2.95902870382344	4.33075114334407	4.52115958767	4.25616347506022	4.02830441824807	3.33029568864198	6.03284468077433e-11	4.77655007266781e-09
Merged-chr19-47220420-1	chr19	47220320	47220520	+	1000.0	f0_c57.idr	intron (NM_021360, intron 1 of 5)	(CACAT)n|Simple_repeat|Simple_repeat	-8423.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	2.81865620965509	2.81253740844755	3.11177841464198	2.31878494294948	3.8233199181005	3.53149889761352	3.6751293150934	3.17471484534079	2.94117291715087	0.0168178121948739	0.113695509586701
Merged-chr5-142815500-4	chr5	142815395	142815595	+	829.145874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178242, intron 1 of 15)	CpG-11746	1892.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	3.83828630410904	3.88003439919505	3.83879685889228	3.98116786723757	4.16059015740246	4.16247467701343	3.97550529736678	4.21034241593064	0.632140539897329	0.131252092053918	0.403315172694949
Merged-chr11-88046746-2	chr11	88046657	88046857	+	895.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173374)	promoter-TSS (NM_173374)	-616.0	NM_001078167	110809.0	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	2.96064800847329	3.15136793813631	3.24263107155931	2.66696429636261	2.75035768404737	3.1349346097136	2.74996804170753	3.02081078561981	-0.413962681003438	0.529927111684924	0.786039591610669
Merged-chr14-62808835-4	chr14	62808737	62808937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045503, intron 2 of 6)	LTR16A|LTR|ERVL	-28853.0	NM_175546	268752.0	Mm.1960	NM_175546	ENSMUSG00000014547	Wdfy2	5830485M08|B130024L21Rik|ProF|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding	5.97196150899688	5.9807927140958	5.88299439060618	6.47154280806061	5.73403149002307	5.55681789855479	6.12307475453984	5.70419280285058	-0.509820618560138	0.0748281846144549	0.295048089828979
Merged-chr16-91011180-4	chr16	91011079	91011279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028368)	promoter-TSS (NR_028368)	-70.0	NR_028368	67394.0	Mm.491293	NR_028368	ENSMUSG00000087354	4930404I05Rik	-	RIKEN cDNA 4930404I05 gene	ncRNA	8.13856966076179	8.36555849828036	7.89132635597821	8.05352033248677	8.31143552749449	8.31758820823185	8.46224499238612	8.14075675790867	0.241171482519127	0.168751723623466	0.461132483714477
Merged-chr6-115662366-4	chr6	115662281	115662481	+	687.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029780, intron 1 of 16)	B1_Mur1|SINE|Alu	13507.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	3.68831925131487	3.59294305622897	3.46806963742538	3.52112517907138	3.79499494330095	3.69961199953447	3.62251817332516	3.6867163964731	0.437575289504004	0.34835119938471	0.656203091647814
Merged-chr9-32146429-4	chr9	32146345	32146545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195632, intron 2 of 21)	intron (NM_001195632, intron 2 of 21)	30309.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	6.29740395099494	6.13547448096377	6.53898506265178	6.93795126628061	6.5295004838787	5.94813648205804	6.20844987600673	6.38519548509103	-0.349603983201248	0.210925653110239	0.515590407044667
Merged-chr10-44858893-4	chr10	44858788	44858988	+	970.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-208326.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	5.34355529384856	5.43358641932724	5.43674500559332	5.7538415698339	5.25968133510647	5.07958630193549	6.11259150525824	5.97827936330327	0.287716612795487	0.414421252622172	0.709044594374843
Merged-chr13-119434542-1	chr13	119434442	119434642	+	569.0	f0_balb.idr	intron (NM_145457, intron 2 of 10)	intron (NM_145457, intron 2 of 10)	5640.0	NM_145457	218693.0	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	3.44572396222307	3.37851487329798	3.38746110646334	3.72528227660846	3.5700357003694	3.37329027786258	3.54195158975937	3.74871740633161	0.190705592606288	0.712235923906612	0.884804781356341
Merged-chr7-88304650-4	chr7	88304548	88304748	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 5 of 6)	intron (NM_009982, intron 5 of 6)	26563.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	5.08886625433991	5.17833017662006	5.3566755426282	5.71828861465418	5.03431049789514	4.84553704255587	4.59614050969813	4.79086338653567	-1.0360496224918	0.00300349729064181	0.032018261741889
Merged-chr13-74301376-4	chr13	74301303	74301503	+	842.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9072.0	NM_001317351	11624.0	Mm.290446	NM_009644	ENSMUSG00000021575	Ahrr	mKIAA1234	aryl-hydrocarbon receptor repressor	protein-coding	3.43081889780813	3.58305252393813	3.24888750768492	3.54200847635517	3.58205080169609	3.48537211259616	3.76018757450187	3.37127196000836	0.314347041743476	0.539666776324894	0.792391982250617
Merged-chr4-9118446-4	chr4	9118324	9118524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-150869.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	7.10610161708351	6.79812280070829	7.49560135967116	7.63610352742563	7.00667286238466	6.92854164388836	7.55124251581417	7.1023365806315	-0.186471966451144	0.464502614492199	0.745464276626538
Merged-chr9-44094246-4	chr9	44094148	44094348	+	741.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016808, exon 13 of 13)	3' UTR (NM_016808, exon 13 of 13)	-7522.0	NM_001190314	259172.0	Mm.227110	NM_147126	ENSMUSG00000034739	Mfrp	rd6	membrane frizzled-related protein	protein-coding	3.53913577292553	3.6897822489733	3.59632157948877	3.67099711623264	3.4803641153685	3.76901089744006	3.46785851824346	4.01514910365153	0.21328827217698	0.667132525930491	0.862249892199419
Merged-chr8-90869648-5	chr8	90869555	90869755	+	864.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	40820.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	4.75047917131572	4.47274726606103	4.75129498314162	4.84813542545237	4.26963509329611	4.15147825545861	4.00912127010277	3.90401810690284	-1.47957181405176	0.000318598255960126	0.00532210872118888
Merged-chr5-145200620-3	chr5	145200536	145200736	+	783.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023322, intron 1 of 2)	B3A|SINE|B2	1246.0	NM_023322	67235.0	Mm.432480	NM_023322	ENSMUSG00000029627	Zkscan14	2310046C23Rik|2810437E14Rik|Zfp99|Znf394	zinc finger with KRAB and SCAN domains 14	protein-coding	3.45733239398138	3.28400796411386	3.40405286381431	3.53647561509176	3.24301880114443	3.27335537845473	3.44400375992832	3.45587921378897	-0.268407109257606	0.606047483963224	0.829302994425252
Merged-chr2-71315521-4	chr2	71315432	71315632	+	979.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 5 of 17)	intron (NM_172436, intron 5 of 17)	52022.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	5.34173104302159	4.85939606100063	5.55557064289998	5.52857750852305	5.08756293476237	5.2632890931342	5.19525978199436	5.39558176213662	-0.219785840400014	0.495992267010275	0.766039627500674
Merged-chr11-77214455-3	chr11	77214362	77214562	+	876.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-1963.0	NM_177710	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	3.74833857981267	3.46574474526088	3.48798374708431	3.67499130877711	3.55416995845706	3.86816710239751	3.41665955567267	3.42714174663588	-0.0825047499303513	0.869898355897298	0.951154134365514
Merged-chr13-56135522-4	chr13	56135429	56135629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159514)	promoter-TSS (NM_001159514)	21.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	6.56195499394549	6.5210572013266	6.42310914368584	6.25275487525514	6.87182053806999	6.85066162640898	7.05935639543355	6.98872719421759	0.733629397856698	0.000380966690349305	0.00617976938294739
Merged-chr18-49832602-4	chr18	49832516	49832716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081371)	promoter-TSS (NM_001081371)	-381.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	8.5526807054527	8.57457491524248	8.46945165622238	8.65388499352173	8.57960527198295	8.842424388302	8.91386858652804	8.67642370870662	0.236400979969731	0.129987125504248	0.401334945198567
Merged-chr4-59471559-3	chr4	59471466	59471666	+	789.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178164)	TTS (NM_178164)	-32933.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	3.86875510770865	3.2929043628516	3.82554420506723	4.13898832396702	3.19867111871683	3.24945353903114	3.33248769553712	3.52300689867098	-1.65847933505576	0.00406536590611209	0.0405645107388017
Merged-chr9-57765119-4	chr9	57765054	57765254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007713, exon 1 of 13)	exon (NM_007713, exon 1 of 13)	706.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	7.08402645451437	7.35397527748282	6.73236937038774	6.9624151226957	7.34211413593702	7.38000229389053	7.55694543558878	7.62942401006453	0.577122321520041	0.00548277234005994	0.0508546067752315
Merged-chr4-57958406-4	chr4	57958290	57958490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1979.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	5.53545802023171	5.15227058174928	5.11791945099963	5.19268919215463	5.7024219720064	5.51833123119451	5.28799119682559	5.24854607028302	0.3720003934519	0.218910521006811	0.526306558628109
Merged-chr19-34570207-4	chr19	34570109	34570309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355262, intron 1 of 2)	intron (NM_001355262, intron 1 of 2)	-13320.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	7.09517455331892	6.93491207570693	6.89304636251616	7.09361599898824	7.31433444061749	7.20041184623851	7.09537621745436	7.00637131160201	0.209746411410092	0.275250195309426	0.587027225525982
Merged-chr11-72564487-3	chr11	72564372	72564572	+	883.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14226.0	NM_029932	77577.0	Mm.46185	NM_029932	ENSMUSG00000020798	Spns3	9830002I17Rik	spinster homolog 3	protein-coding	4.10435158547511	4.05399350208784	3.78982094899483	2.92915832349104	3.5346320420122	3.96491789083079	3.55429999851972	3.68147862829241	-0.322746887102827	0.597493710588539	0.825341163732687
Merged-chr11-69630126-2	chr11	69630026	69630226	+	944.9166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2845.0	NM_011814	23879.0	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	3.0916227645022	2.8669617928995	2.95691898758928	2.76832163746955	2.90431575829555	3.49999662792107	3.25844601848217	3.6963986380136	1.72982693492691	0.00493474002194146	0.0471031034540829
Merged-chr10-56174015-4	chr10	56173916	56174116	+	935.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033385, intron 13 of 32)	intron (NM_001033385, intron 13 of 32)	54673.0	NM_001033385	544696.0	Mm.411188	NM_001033385	ENSMUSG00000038122	Tbc1d32	Bromi|C6orf170|D630037F22Rik|b2b2284Clo	TBC1 domain family, member 32	protein-coding	4.00010003832672	3.85262979539666	4.49683523841213	4.77942794915276	4.01907000806827	4.18011584695465	4.39902635242694	4.37655842930426	-0.241689279590713	0.61220606273652	0.832680684364583
Merged-chr17-28224184-4	chr17	28224091	28224291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027185, intron 7 of 10)	intron (NM_027185, intron 7 of 10)	-8563.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	6.03309472958598	5.80437081165624	5.65830358058829	5.87744545989796	6.34044776155883	5.69295549355538	5.87584214053633	5.68134852149915	0.150604393070119	0.594867008557164	0.823614837620898
Merged-chr15-50751201-3	chr15	50751124	50751324	+	942.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	137825.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	4.24832788630376	4.65769035878045	3.78079156849404	3.72294675152821	4.02916359024477	3.78510729174968	3.58756563209767	3.59863704563174	-1.06279644708692	0.0490779644633682	0.229025138172037
Merged-chr3-61595759-4	chr3	61595662	61595862	+	928.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	231255.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	5.4373792845613	4.68970013863416	5.07802255382088	5.18417099728102	5.16307709519634	4.84404983007002	4.76850643188038	4.74693825461538	-0.428465703423135	0.229913382494875	0.539096658041788
Merged-chr16-49818766-4	chr16	49818675	49818875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-36879.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	6.66691806107645	6.35258747071715	6.18014701983147	6.84549537520336	6.87546543711475	6.50385660093449	6.85251957719728	6.72186612754839	0.28286163535097	0.247653223879795	0.558864651022127
Merged-chr2-167798129-4	chr2	167798021	167798221	+	884.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106944.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	3.68269254121893	3.54828172131721	3.8778970632437	3.70320407851654	3.57366520458835	3.56826406024627	3.76853592832224	3.87551723735468	-0.0181089304989708	0.969494943288966	0.98900997240126
Merged-chr19-37208312-4	chr19	37208238	37208438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290828)	promoter-TSS (NM_001290828)	793.0	NM_001164336	69104.0	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	5.69698074264936	6.16697166594382	5.39673667349588	5.46488197536073	6.45808186855147	6.16081660766605	5.91152797459415	5.9813741547368	0.695458238421815	0.0201729562900418	0.12882566443288
Merged-chr8-104253180-3	chr8	104253092	104253292	+	778.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037841, intron 1 of 2)	B3A|SINE|B2	2331.0	NM_001286383	75458.0	Mm.269219	NM_029295	ENSMUSG00000054400	Cklf	1700001C14Rik|1810018M11Rik|A730028G07Rik|C32|CKLF1|CKLF3|CKLF4|CKLF5|Cklf2|Cklf6|HSPC224|UCK-1	chemokine-like factor	protein-coding	3.85250734840646	3.65910324658964	3.53872226513526	3.84109051371452	3.90123811096484	3.76845762681154	3.63798031880297	3.64998981611061	0.0412399371984513	0.930248146605191	0.974833757843968
Merged-chr2-32784503-4	chr2	32784424	32784624	+	947.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025619)	promoter-TSS (NM_025619)	-119.0	NM_025619	227736.0	Mm.441499	NM_025619	ENSMUSG00000038987	Cfap157	1700019L03Rik	cilia and flagella associated protein 157	protein-coding	4.86085440134226	4.49342497764474	3.9241104864874	4.17463341570135	4.42820471491123	4.21881282586646	4.35539434741962	4.14139977079983	-0.2591215794803	0.561910205015572	0.805222493664379
Merged-chr10-53888869-4	chr10	53888701	53888901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137892.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	5.37795393101649	5.3058077330404	5.51584956690319	5.35820276440171	5.18565211079812	5.26560332445753	5.13320806466418	5.70376754929425	-0.0893410016724569	0.766430580140268	0.908638755872086
Merged-chr2-167961236-4	chr2	167961158	167961358	+	854.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	28931.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	3.87046199093399	3.72064506196473	4.05196310629999	4.12375005385002	3.84408792813249	3.5919482353277	3.52833643456772	3.86874041001271	-0.684828871061497	0.152655121047027	0.4369757444304
Merged-chr12-95694132-4	chr12	95694013	95694213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	1887.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	5.46068419753875	5.4576023229002	5.59031033683846	5.57142975356133	4.87178111771729	5.29936515446682	5.19815226607206	5.37382484149829	-0.611282470467181	0.0396255240799796	0.200547865364681
Merged-chr2-52924518-4	chr2	52924410	52924610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	66642.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	6.19817289036713	5.79757610584649	6.08652275228653	5.84078464025278	6.15834586867267	5.8210314450628	5.81925448440392	5.49161746626441	-0.197688027783065	0.478561483673324	0.754569431503965
Merged-chr17-25273496-4	chr17	25273405	25273605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027452)	promoter-TSS (NR_027452)	-74.0	NM_001177610	22196.0	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	6.82564434720367	7.13904861911105	6.94626790783469	6.72172821758579	6.77677433113467	7.0308728746213	6.42448046181986	6.99095048598469	-0.123499665686449	0.588742721753643	0.819855972760938
Merged-chr13-90516116-4	chr13	90516009	90516209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	389246.0	NM_001145879	435376.0	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding	7.50894624924206	7.86175634064262	7.99639298967632	7.97873210780465	7.3136935675408	7.53798148182444	7.65652227944699	7.31172869767666	-0.521476741891044	0.00763831797688032	0.0650111007146197
Merged-chr12-10589871-4	chr12	10589771	10589971	+	851.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143483.0	NR_110487	328061.0	Mm.56067	NR_110487	ENSMUSG00000112792	Gm38407	4931412M21	predicted gene, 38407	ncRNA	3.85893821845667	3.99192557125744	4.00300938472737	3.72820896547175	3.87879524743692	3.69557228764116	3.98533219427261	3.90682736985162	-0.0501872246200749	0.910302854511041	0.966671146059764
Merged-chr6-112718199-4	chr6	112718087	112718287	+	946.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_080448, exon 22 of 22)	3' UTR (NM_080448, exon 22 of 22)	-21517.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	5.12526829518095	4.71009877884246	5.44244840345979	5.22241500682954	4.5416166864196	4.5046150344735	4.76053403352678	4.89275135319437	-0.947588912804112	0.00888043240383149	0.0724636361426484
Merged-chr18-53091030-3	chr18	53090941	53091141	+	900.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-85251.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	3.06594258293871	3.05043962673266	3.14193435120507	3.1869123701517	4.2088732944333	3.46756825594626	4.11686855368774	3.57958492045678	2.51716080231118	2.0356493166064e-05	0.000516745658725846
Merged-chr9-32652438-4	chr9	32652347	32652547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-43595.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	6.18334454030251	6.12880358050913	5.51756227702913	6.41456522078197	5.77994819010336	5.94915635822307	5.86422727056768	5.81821614297554	-0.422109231937175	0.136919196377353	0.411508257743677
Merged-chr10-17727930-4	chr10	17727784	17727984	+	977.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4656.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	4.95574523027234	4.7304674502175	4.75190408838447	4.33901178761776	4.6232507917398	4.76957134645335	4.61414227638179	4.820639074644	0.0266915102771331	0.942251286435824	0.979062797089676
Merged-chr2-59183698-2	chr2	59183598	59183798	+	856.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	22848.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	2.80407131390468	2.70973077556855	2.86557030540456	2.44631129991902	2.72111705710104	2.84864943982127	2.96698203159536	2.73898564937992	0.542910178689478	0.409055401016616	0.704791463679563
Merged-chr13-41521509-4	chr13	41521401	41521601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-34141.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	7.11733842032057	7.2917497990827	6.92220951159739	7.03428947012488	6.76035817790868	6.69761005973929	6.98878445048126	7.14717083552813	-0.263076340243792	0.209246907200265	0.513674275137357
Merged-chr13-54789912-2	chr13	54789796	54789996	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028841, intron 1 of 7)	CpG	491.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	3.47261342290709	3.52883569411329	3.47307452954534	3.48884367921276	3.59439517138596	3.58713446549635	3.34690805434396	3.35695352722248	-0.034041811890476	0.945545223867669	0.980570261396225
Merged-chr4-150523558-2	chr4	150523447	150523647	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 10 of 22)	intron (NM_001085492, intron 10 of 22)	128627.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	2.86363316205055	2.79685633782434	2.69217241640671	2.68678168008015	2.50664756909349	2.36124930762379	2.6823613008587	2.41954855286477	-1.40937827616863	0.0529106921631569	0.239957321279474
Merged-chr7-44858103-4	chr7	44858012	44858212	+	965.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290764, intron 2 of 16)	intron (NM_001290764, intron 2 of 16)	709.0	NM_001290767	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	4.97599071131547	5.13882091359421	4.67999700824021	4.46707875106933	4.93424547299735	4.68245788203168	4.84998570759017	5.1286833578071	0.163723338160938	0.65481602406339	0.855720388544032
Merged-chr11-116785042-1	chr11	116784942	116785142	+	576.0	f0_balb.idr	Intergenic	RLTR24B_MM|LTR|ERV1	-9535.0	NM_011371	20445.0	Mm.436887	NM_011371	ENSMUSG00000009588	St6galnac1	Siat7a	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding	2.80757041635467	2.49450768288831	2.47799752183374	2.40012137202877	2.21717724187104	2.22117049852419	2.11565900118289	2.19844943789405	-2.45121636747941	0.0053591982942477	0.0500326208032183
Merged-chr4-148168532-4	chr4	148168421	148168621	+	957.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7853.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	4.61472375711532	4.3785264425108	4.12321608001547	4.30307365963554	4.91308421709537	4.40560495753552	4.30546568329959	4.64898845998091	0.54101294948222	0.17512359354615	0.469867777338815
Merged-chr9-116111836-3	chr9	116111724	116111924	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 3 of 6)	URR1B|DNA|hAT-Charlie	63539.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	6.23050355081669	5.90629195457826	6.09139027165153	6.08089856701039	3.90708692541493	4.49320773230843	4.26693751660655	4.21929461013868	-4.02385861965329	1.095673681823e-22	5.06421798691425e-20
Merged-chr14-86679049-3	chr14	86678957	86679157	+	735.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019670, intron 27 of 27)	B4|SINE|B4	433087.0	NR_040457	75155.0	Mm.399239	NR_040457	ENSMUSG00000115271	4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA	3.69962767645278	3.58928442799967	3.88170549027155	4.25027439217688	2.88577380087105	3.1290684986453	3.35639066253632	3.2358659863741	-2.78360479554746	1.72855671806406e-05	0.000448876098632184
Merged-chr11-6484570-6	chr11	6484485	6484685	+	874.5361330000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8509.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	3.3387160792579	3.41239653417043	3.33914602271858	3.13393193563304	3.66761286601075	3.4527603837827	3.32671030107807	3.33740716393623	0.562272040245527	0.283858020956919	0.595921842610015
Merged-chr9-21161498-4	chr9	21161416	21161616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4198.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	7.4848772540096	7.62030332377962	7.4086273622389	6.9589694642017	7.97283602248201	7.91754749659525	7.24616654713199	7.49962769130747	0.415197081166878	0.082908076278483	0.312801545713248
Merged-chr8-26687222-4	chr8	26687132	26687332	+	940.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137191.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	4.65405893542729	4.61464116006518	4.355860836927	4.60929347429955	5.00987682409041	4.74892498763636	4.51436648103531	4.25374312806836	0.234618408743581	0.547368441203159	0.796783882293747
Merged-chr6-56798437-2	chr6	56798337	56798537	+	788.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145958)	promoter-TSS (NM_145958)	-624.0	NM_001362213	210973.0	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	3.13015822979835	3.3496307492905	3.13053734245753	3.1999577736116	3.12859644623883	3.17764110609677	3.05861523710059	3.24430288644085	-0.211390431832279	0.700840991479513	0.879374176246616
Merged-chr3-127410422-3	chr3	127410334	127410534	+	994.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	-1376.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	2.59391362729421	2.53866902583218	2.59411840322875	2.63223651504599	3.6283660637833	3.14326678728476	3.43060453338415	3.143995285166	3.47396522403455	2.11777440531041e-05	0.000535682531611903
Merged-chr6-32588169-4	chr6	32588056	32588256	+	954.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175750)	promoter-TSS (NM_175750)	36.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	4.99466175771468	4.99766449166189	5.42235619966622	4.99143692248737	4.70275806308551	5.06421263465792	4.75160404682498	4.7298875894389	-0.583229961175408	0.0845658503050365	0.316446065331575
Merged-chr1-154105006-4	chr1	154104914	154105114	+	931.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-96173.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	5.26062637317959	5.2610812342836	4.85415270543002	5.1001492380987	4.80987177877021	4.32854128175483	4.54511111720469	4.95714447792536	-0.884299678214227	0.0145358863802536	0.10257260401111
Merged-chr18-34663301-4	chr18	34663216	34663416	+	810.920837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11580.0	NM_178347	52563.0	Mm.196638	NM_178347	ENSMUSG00000024370	Cdc23	6030435O18|D18Ertd243e	CDC23 cell division cycle 23	protein-coding	3.83379499633268	4.27579511313894	3.83428041543975	4.13466222804358	4.50214501345064	4.6805161363334	4.28746548128087	4.71515399722927	1.20998276588659	0.00418378599470124	0.0415280579161679
Merged-chr7-19744769-4	chr7	19744668	19744868	+	768.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008990, intron 1 of 8)	intron (NM_008990, intron 1 of 8)	4805.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	4.07977765459258	4.44329371150427	4.08041920892724	3.7267405754561	3.93200353993786	3.90470547705938	3.7119318356606	3.53817570551307	-0.88209957422744	0.0753780453463183	0.296467674557991
Merged-chr15-8451240-4	chr15	8451142	8451342	+	987.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6779.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	5.15428563703708	5.32041285513299	4.74375826902885	4.96534421103348	5.35313689322538	5.39018052705287	5.16117787754418	5.05187531603058	0.351885126252366	0.270830838545339	0.582647290600818
Merged-chr5-134932291-4	chr5	134932199	134932399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024479)	promoter-TSS (NM_024479)	-74.0	NM_001359536	79565.0	Mm.34235	NM_024479	ENSMUSG00000040557	Mettl27	AW492986|BC002286|Wbscr27	methyltransferase like 27	protein-coding	6.69947793601213	6.85209090093356	6.13836481438987	6.52893230324706	6.47983477659526	6.40182820645552	6.32848577982651	6.5771660438026	-0.191736604149672	0.424180195904869	0.71604841147627
Merged-chr3-45284080-3	chr3	45283983	45284183	+	902.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045172, intron 6 of 8)	intron (NR_045172, intron 6 of 8)	94177.0	NR_045172	72511.0	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	3.74023419222487	3.59140150073443	3.59149675760745	3.63971435212838	3.48976908247267	3.40898338643563	3.41039596368168	3.69077425574075	-0.443196117719859	0.365780607937047	0.670417458102074
Merged-chr5-130078294-4	chr5	130078195	130078395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013837, intron 1 of 5)	intron (NM_013837, intron 1 of 5)	-1075.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	4.87149269563863	5.00651779415672	5.04390546577958	5.18397038326769	4.88031691531179	4.35083865436981	5.11114012242654	4.94041567213762	-0.367505545808305	0.299979286417137	0.612179983023751
Merged-chr13-59562697-4	chr13	59562569	59562769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5322.0	NM_023328	67269.0	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	6.19093115235247	5.93421149234417	6.38805348834052	6.23611875042862	5.75071526485547	6.11335704033782	6.32202870479724	6.0873070530721	-0.18871099604859	0.462662065228984	0.744188356253589
Merged-chr3-59175441-4	chr3	59175330	59175530	+	965.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	19674.0	NM_001302203	84111.0	Mm.60267	NM_032399	ENSMUSG00000051431	Gpr87	-	G protein-coupled receptor 87	protein-coding	4.58678809756312	4.47454388325028	4.75483844303941	4.86754807372423	5.31423332941238	4.93013422733606	5.21189929047771	4.62842770722431	0.730725995646485	0.0448334604609531	0.216367271147208
Merged-chr17-26885169-4	chr17	26885064	26885264	+	951.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31927.0	NM_053173	16580.0	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	5.05655298743351	4.91139254056208	4.5216658463325	5.02331658757935	5.08696027033525	4.87466418712227	4.86729177682876	4.77583032628042	0.0199062575601643	0.953629602336646	0.983474137045163
Merged-chr3-126611629-3	chr3	126611483	126611683	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	14632.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	3.20813226299704	3.04891987034469	3.32557046595925	3.4713977254467	3.0230018791245	3.49517568218711	3.19711380431243	3.4811784922267	0.103141253942763	0.858641029799784	0.946576014812915
Merged-chr2-128817962-4	chr2	128817897	128818097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028248)	promoter-TSS (NM_028248)	-306.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	7.88158351667116	7.78487549665453	7.52272379660866	7.22555442776215	7.82785026848618	8.1361292626859	7.71798233886032	7.77385922831761	0.331564793751124	0.117067124849959	0.378533169658281
Merged-chr7-79273056-4	chr7	79272952	79273152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018811)	promoter-TSS (NM_018811)	-214.0	NM_018811	54608.0	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	9.12688021606185	9.29002294310631	9.31246387897525	9.36479436783154	9.20335889250434	9.23420953171816	9.40193687740306	9.31819964990212	0.0141956873904305	0.920278411411965	0.97042261664112
Merged-chr10-81366239-4	chr10	81366121	81366321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014836)	promoter-TSS (NM_001014836)	-401.0	NM_001014836	432479.0	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	6.05056191990392	6.14681283391012	5.82640857199982	6.06918012417086	5.684758424992	5.76240594572625	6.37506792595022	5.82227234425484	-0.149670505684671	0.585879655897254	0.818478990587386
Merged-chr7-102249572-4	chr7	102249485	102249685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	533.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	5.88934655690584	6.21612216634819	6.04256011735912	4.94397485382857	6.14740614311729	5.94701052695714	6.3168494788383	5.60313776549529	0.28468516997567	0.424202776312274	0.71604841147627
Merged-chr15-74955371-9	chr15	74955331	74955531	+	956.8037109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164036, exon 1 of 4)	5' UTR (NM_001164036, exon 1 of 4)	325.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	3.84061249615378	4.00163754719778	4.25775034557999	4.25313980878075	3.87834596723947	3.84643769345887	3.8790345014053	4.1309096466037	-0.462820812530397	0.294198666417205	0.606535224072776
Merged-chr7-101599485-3	chr7	101599388	101599588	+	573.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1ME|LINE|L1	-18327.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	3.65444052974052	3.54799706804345	3.33206875343151	3.32401782556228	3.74146516693887	3.62019332158062	3.37907338069942	2.98534320180477	-0.00725435837914377	0.990169522894231	0.996117897800711
Merged-chr9-66914019-2	chr9	66913919	66914119	+	623.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	5686.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	2.60608255519406	3.02036972876037	2.87639686308677	2.77091147910263	2.89110952950958	2.92050021073875	2.86613685365629	2.87496193263818	0.277759727577583	0.655196902751504	0.855964328774641
Merged-chr2-91206452-4	chr2	91206343	91206543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357067, intron 6 of 10)	intron (NM_001357067, intron 6 of 10)	3531.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	7.88754958379259	8.23757627245448	7.69185533769238	7.72150204693708	8.01329777318938	8.03686448242527	7.89369982689691	7.80068595638377	0.0503530366984106	0.792118092611137	0.919489452110571
Merged-chr16-38562802-4	chr16	38562718	38562918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205287)	promoter-TSS (NM_001205287)	4.0	NM_026407	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	6.99870697602518	6.96737489198357	6.43013400070436	6.80430287403733	7.03204034712738	7.22488018441623	7.24020278576134	6.93149233379949	0.403060824191074	0.061595306778804	0.262642565219463
Merged-chr3-37956805-4	chr3	37956703	37956903	+	886.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040559, intron 2 of 3)	intron (NR_040559, intron 2 of 3)	57990.0	NR_040559	626410.0	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	4.02001567182721	3.7159108138816	4.58922258146062	4.66102846614421	4.35049543813126	4.14613444836388	4.56686839519202	4.31164642776092	0.0888684600486732	0.853886753689676	0.944905950148447
Merged-chr9-78538765-4	chr9	78538616	78538816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172773, intron 10 of 10)	intron (NM_172773, intron 10 of 10)	49329.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	4.73833331031429	4.96532943358437	5.38918322880485	4.77262075995474	4.81069004742857	4.79107872371143	4.54609358265778	5.11740347170955	-0.304054659522027	0.408128982276912	0.704191133871672
Merged-chr4-141182126-4	chr4	141181988	141182188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 4 of 9)	ORR1C2|LTR|ERVL-MaLR	-31868.0	NM_001081174	76166.0	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723|b2b2804Clo|b2b2827Clo	REM2 and RAB-like small GTPase 1	protein-coding	5.86489618839834	5.3918268644012	5.75398823646022	5.80746144155915	5.62095967218884	5.58249767158405	5.65286840450684	5.23778227305872	-0.306895943126471	0.279294462062215	0.591442460155378
Merged-chr9-24499710-4	chr9	24499607	24499807	+	968.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359948, intron 1 of 22)	MTE2a|LTR|ERVL-MaLR	3433.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	4.93685495216639	4.54346774262759	5.04048863810891	5.28336652104875	4.90598183530415	4.92297377529515	4.98281687038214	5.2202730992274	0.0327410652526759	0.926259042661376	0.972866537762017
Merged-chr5-115187393-4	chr5	115187281	115187481	+	991.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310712, intron 1 of 5)	intron (NM_001310712, intron 1 of 5)	-1260.0	NM_001310715	29867.0	Mm.38551	NM_013879	ENSMUSG00000029544	Cabp1	caldendrin	calcium binding protein 1	protein-coding	4.93417858921086	4.78027495283783	4.54916408143743	4.59941175387588	5.41343108633273	5.61922171997385	5.14618165666068	5.34140133622683	1.2896569242674	4.88299523451471e-05	0.00110901952073236
Merged-chr10-98951668-5	chr10	98951553	98951753	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	36501.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	3.71364115350862	3.70959901675444	3.86286714791107	4.13414668538258	3.68791752951822	3.66184869760162	3.69934186893341	3.48319531618072	-0.735925366292169	0.12997288139829	0.401334945198567
Merged-chr9-124121520-4	chr9	124121404	124121604	+	986.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009917)	promoter-TSS (NM_009917)	-39.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	5.5410403298186	5.44501536145852	5.3719142975094	5.09029654619827	5.65848932271708	5.24632750586929	5.48736957415844	5.92274822083976	0.432419760752494	0.155840720381144	0.441705659838286
Merged-chr4-109199609-4	chr4	109199519	109199719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346502, intron 1 of 23)	intron (NM_001346502, intron 1 of 23)	2653.0	NM_133885	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	5.2459946389503	5.44654118191465	5.516531882427	5.89145246216916	5.24882905842111	5.54908269170618	5.4340351344313	5.4575362469466	-0.261531168131072	0.390178607949091	0.690360763011966
Merged-chr18-84684342-5	chr18	84684325	84684525	+	904.6333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 1 of 11)	intron (NM_023149, intron 1 of 11)	1277.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	3.03601461572969	2.95695173436527	3.79127968701366	3.10039855597271	3.62249972349516	3.557353896515	3.36507308845687	4.02860156900808	1.30400177275413	0.0386371461007245	0.197282157295068
Merged-chr6-54644546-3	chr6	54644433	54644633	+	852.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164361, exon 14 of 14)	3' UTR (NM_001164361, exon 14 of 14)	-37091.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	3.94637528311313	3.53644975581613	3.77644083489241	3.81471933696232	3.41487136667941	3.25213455337532	3.33438704442719	3.34412112346355	-1.47199949951447	0.00530978335321906	0.0497329785658019
Merged-chr7-19310239-5	chr7	19310080	19310280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008036)	promoter-TSS (NM_008036)	-135.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	6.95627849621783	7.07584236060565	7.01927235420199	6.27912557369562	6.86212639771544	7.29935516361064	6.77515704819671	6.88762382512854	0.155852778146185	0.544833064334029	0.795533615455646
Merged-chr17-66128846-4	chr17	66128716	66128916	+	883.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003919, intron 2 of 26)	intron (NM_001003919, intron 2 of 26)	5296.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	3.76532984817919	3.80060005862915	3.76585771505431	3.58108635504361	3.98473084918929	4.21833751478469	3.85178749596953	3.59356792880201	0.599414040247509	0.197588901930422	0.49895982014778
Merged-chr15-59520667-4	chr15	59520561	59520761	+	954.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-127993.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	4.31451257627312	4.38357171457465	4.07716634380809	4.43234550670044	4.35083683427308	4.56876874657263	4.33811362809879	3.90859831368291	-0.0116163327724183	0.977747244476425	0.991976269485839
Merged-chr2-6731040-4	chr2	6730939	6731139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-9377.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	5.56809845260252	5.21316352330827	5.35327671452706	5.43327534586141	5.22137047450725	5.30475006160409	5.4651770949407	5.34956545730454	-0.116717688951395	0.682676829983579	0.86997749614016
Merged-chr11-103957090-2	chr11	103956990	103957190	+	905.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-3034.0	NM_008740	18195.0	Mm.260117	NM_008740	ENSMUSG00000034187	Nsf	AI316878|AU020090|AU067812|SKD2	N-ethylmaleimide sensitive fusion protein	protein-coding	3.13698650916676	3.51521642718182	3.31111041816232	2.81721631105804	3.19846855665768	2.97330161266684	3.29742605574293	3.25393099993983	-0.113467433646854	0.853595577472424	0.944871617325935
Merged-chr5-21210617-4	chr5	21210532	21210732	+	946.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 5 of 26)	(CA)n|Simple_repeat|Simple_repeat	24365.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	4.89473537013698	4.50964366574577	4.6734718615295	5.06233176278459	4.43539820894931	4.67924296438584	4.93731343895222	4.95828212948757	-0.109085141818636	0.771362580743262	0.910379161490028
Merged-chr2-3512931-4	chr2	3512851	3513051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177647)	promoter-TSS (NM_177647)	-114.0	NM_177647	227526.0	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	9.34789804461981	9.58522361453694	9.23792873552114	9.33418954945644	9.29663675413399	9.54678337828544	9.44422536248375	9.17291662765956	-0.0143172695422828	0.927931802730029	0.973775694204764
Merged-chr6-87533808-3	chr6	87533699	87533899	+	715.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286610)	promoter-TSS (NM_001286610)	-540.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	3.13643588504778	2.92010331107727	3.24452798392219	3.04510382899417	2.80986114191941	2.9281962453286	2.9464121259001	3.24257728799481	-0.416074290059516	0.492127791058465	0.763346782261791
Merged-chr17-33637901-8	chr17	33637863	33638063	+	876.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028279)	promoter-TSS (NR_028279)	-93.0	NM_001002842	378460.0	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	4.07817809947846	3.78449124103776	3.88322815296308	3.98841618816408	4.044703894749	3.83448501801754	4.4099665531922	3.9326834822581	0.363547679562586	0.412984524794184	0.707970975029748
Merged-chr11-116020235-4	chr11	116020092	116020292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4312.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	4.84989329212048	4.96140339830485	5.02369227608651	4.24342183995774	5.19686599425012	4.87097385475237	4.89882912950018	5.02022441872121	0.4433471041324	0.238243314535255	0.548657981276851
Merged-chr10-51527984-6	chr10	51527868	51528068	+	959.513916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16-int|LTR|ERVK	37070.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	3.98669740193059	3.92166602957342	4.08454851358978	3.92570983262447	4.18130263493209	4.00394098348661	4.31784181941633	4.17233974090526	0.52458071571433	0.197828784932095	0.499140586391181
Merged-chr13-42576107-6	chr13	42575937	42576137	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104762.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	2.91086381328683	3.31848199462738	3.35369746104291	2.99163621943832	3.5780917605611	3.23028735168941	3.28590816680144	3.29705621479384	0.767407624645139	0.181151583435366	0.47765583183706
Merged-chr4-129785383-4	chr4	129785265	129785465	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35114.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	4.86478579558098	4.8197363990677	4.69955622249306	4.96987908139962	5.36606447655198	5.3779313558182	5.02256148193299	5.34343668295703	0.820206268897792	0.00908715419084614	0.0736103958290927
Merged-chr6-30035274-4	chr6	30035181	30035381	+	956.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-12707.0	NM_001164228	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	4.85488396745527	4.92058227258588	4.96412246849339	5.06808057820798	4.76790973779753	4.9140634816955	5.21644567823175	4.99492524002947	0.0257494432564124	0.936809207629322	0.977136048115616
Merged-chr6-57851339-4	chr6	57851224	57851424	+	841.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-6867.0	NM_134183	171201.0	Mm.377179	NM_134183	ENSMUSG00000115343	Vmn1r21	V1rc28	vomeronasal 1 receptor 21	protein-coding	3.95365916810647	4.18615621004228	4.00402365699797	3.79143188445311	4.31199231969122	4.22298985450677	3.7200886940381	4.0016407152647	0.281997871724349	0.532421554833765	0.788161360416007
Merged-chr19-40744835-2	chr19	40744734	40744934	+	957.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85064.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	3.13138261358755	3.15661729372036	3.01293161045122	2.74983022793021	2.84050301480098	3.24475061214151	3.06196881374364	3.01140854562082	0.116684176370121	0.848528189331427	0.942781137137219
Merged-chr3-100176200-4	chr3	100176106	100176306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104341, intron 3 of 13)	intron (NR_104341, intron 3 of 13)	13743.0	NR_104341	14547.0	Mm.279228	NM_010269	ENSMUSG00000027865	Gdap2	C77050|D3Ertd801e	ganglioside-induced differentiation-associated-protein 2	protein-coding	6.4190904093319	6.14650635371142	6.40365302979868	6.53755940059235	5.96761657691735	6.0503252718243	6.0509994170201	6.16104411152506	-0.515384634089295	0.0271872702626253	0.157005693434225
Merged-chr9-108995431-4	chr9	108995331	108995531	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 1 of 13)	intron (NR_153430, intron 1 of 13)	3529.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	4.22253737629744	4.30143840617799	4.44986711504982	4.29073447962559	4.69129499888724	4.4920627842693	4.65536108060605	4.48810756794716	0.634549789433505	0.0800669079583569	0.306517637905012
Merged-chr2-153276356-3	chr2	153276258	153276458	+	927.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-15058.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	3.7086416561544	3.69593007964371	3.80680040261046	3.78407007344755	3.51931543682142	3.77497445631596	3.58951380865621	3.42521628160145	-0.541067516878344	0.257151642381877	0.568869652403216
Merged-chr7-129301691-4	chr7	129301585	129301785	+	826.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080963, intron 1 of 6)	intron (NM_001080963, intron 1 of 6)	44591.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	4.25027746780662	4.49886327944387	4.43627261192464	4.59340121581161	4.84408198208361	4.52161256870966	4.28139109403929	4.55670753954003	0.260106475804793	0.499636451679545	0.768428145331741
Merged-chr16-44988798-4	chr16	44988681	44988881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	45103.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	6.36632119418123	6.08087102924206	6.04526235440353	6.39560561826424	5.84528321309866	6.15523274544368	6.19416810912846	5.85532578679926	-0.349790503933296	0.161755642804974	0.450749199196011
Merged-chr6-129469003-3	chr6	129468884	129469084	+	963.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_132130, exon 3 of 6)	non-coding (NR_132130, exon 3 of 6)	3795.0	NM_001309637	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	3.19865634581529	3.29848898700083	3.34359785811713	3.32148019421942	4.03599085639145	3.87983579650377	4.01013425943879	4.14409472414197	2.2334130524455	6.88103213641637e-06	0.000197334805172434
Merged-chr10-5824196-4	chr10	5824129	5824329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175374)	promoter-TSS (NM_175374)	-286.0	NM_175374	108853.0	Mm.55082	NM_175374	ENSMUSG00000019774	Mtrf1l	9130004K12Rik	mitochondrial translational release factor 1-like	protein-coding	8.87703649055872	9.04517731203767	9.21368512946932	8.84550363101775	8.9693997122008	9.21135050256251	9.26012556538227	9.0311279419901	0.149793702041828	0.353459981461341	0.660273623806948
Merged-chr4-155564081-3	chr4	155563975	155564175	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355599, intron 1 of 10)	CpG	260.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	7.2920696664259	7.16862928030022	6.84600951523946	7.13694272498962	7.37616076442203	7.49091742140596	7.28778705037887	7.55949653839828	0.415400541626862	0.0302392166906345	0.168142164268206
Merged-chr5-3497863-4	chr5	3497737	3497937	+	886.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-45996.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	4.61263327528225	5.02566716113263	4.40567166610703	4.97660707950368	4.26278451990447	4.34047191701459	4.24489020753136	4.30967129607781	-1.15013817014252	0.00335506558844206	0.0348577161756995
Merged-chr4-121016055-4	chr4	121015959	121016159	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	1188.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	4.28736955256991	4.27700284402182	3.78047876050063	3.40803302363493	4.82347897156917	4.41882319402315	3.98987555574165	3.89625179826683	0.855267541088251	0.109692849206064	0.365706543278895
Merged-chr15-102065858-4	chr15	102065763	102065963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7910.0	NM_145625	75705.0	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	5.80208363670496	5.65990875259997	5.91869105804863	5.88063943724849	6.242659472252	5.65266607107508	5.72460822205725	5.89220591352243	0.152748979856036	0.573672465050849	0.811959283950177
Merged-chr12-17783040-1	chr12	17782940	17783140	+	599.0	f0_balb.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	92231.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	3.53816053018713	3.26014960491727	3.42828831537317	3.57973958507267	3.55394787715889	3.35484093940539	3.5756026204516	3.68584296211948	0.278670063036764	0.582782103685031	0.816777579274426
Merged-chr10-6462371-1	chr10	6462271	6462471	+	556.0	f0_balb.idr	Intergenic	L1MCa|LINE|L1	-296222.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	2.4097817027112	2.37743795435487	2.5288629171594	2.76031875996422	1.9710676645714	2.07041781847276	2.05139561862292	2.13323308603659	-4.69719528116402	6.78224574351242e-05	0.00146377643959209
Merged-chr1-151595082-4	chr1	151594977	151595177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	23704.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	6.81934372968359	6.2826758993545	6.42681735822087	6.73247532607065	6.03498044850935	5.80592372168387	5.76718350125505	5.99299308572724	-1.0279790139968	4.36887366134529e-05	0.00100605648120639
Merged-chr10-8000150-3	chr10	8000068	8000268	+	893.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-44045.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	3.6202182664249	3.93574345493985	3.83930703595424	4.10947651505894	3.8602808294454	3.7374321031905	3.77291742738012	3.93375535354127	-0.211068067255641	0.648728350683282	0.852408766190126
Merged-chr15-79723578-1	chr15	79723478	79723678	+	552.0	f1_c57bl6.idr	TTS (NM_001205345)	TTS (NM_001205345)	18958.0	NM_194342	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	2.49122663679983	2.67203287985627	2.63469089530669	2.63563607365839	2.71934448203451	2.80711446949893	2.86980436819221	2.87991499324039	0.984633876025876	0.122489130648669	0.387892237862776
Merged-chr1-36071384-4	chr1	36071281	36071481	+	902.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	2981.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	4.84852369348697	4.88385920511961	4.70542272022497	4.7898705118814	4.41890225291988	4.87783260840299	4.28916682538845	4.66368891569391	-0.506219257880345	0.163240330880337	0.452852268755613
Merged-chr16-84703355-4	chr16	84703241	84703441	+	837.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9682.0	NR_132106	100653389.0	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	3.596424042784	4.047433942298	3.71728157758189	3.7971033215498	4.06251935820918	4.23678143744691	3.81229278123681	4.02155965464279	0.652443501694514	0.149473484646729	0.431740176263827
Merged-chr6-145302447-5	chr6	145302385	145302585	+	995.080017	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	51933.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	4.27671723408112	4.28451916529217	4.60543675649258	3.91215502377309	5.04844408008481	5.07349573093173	4.87656436481327	5.10952828887742	1.65429273699793	8.28117295324856e-06	0.000232798424028151
Merged-chr15-102462077-3	chr15	102461970	102462170	+	619.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025385, intron 4 of 4)	intron (NM_025385, intron 4 of 4)	2900.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	3.11353256995632	3.10398949708949	3.22750711604268	2.93367720712898	2.70933196349834	3.10048744423077	3.2665615290328	3.17019860270533	-0.0774618968731793	0.899834285732826	0.962818053944307
Merged-chr1-182380834-4	chr1	182380727	182380927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28340.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	6.88814736351571	7.07512849591465	7.30112848462051	7.34088273692045	7.12060237207813	7.00910313642839	7.05863606046105	7.1127901716044	-0.131766809192135	0.507814624398473	0.773104700133868
Merged-chr18-23894446-4	chr18	23894329	23894529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001162942)	TTS (NM_001162942)	-60259.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	6.10611936054673	6.20061698851646	6.71257621063048	6.82966084097495	5.72031961187595	6.26327401896446	6.31033750543027	6.16594913527143	-0.578241771077504	0.0419478776102544	0.207491867993071
Merged-chr4-59853337-4	chr4	59853195	59853395	+	854.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	(GA)n|Simple_repeat|Simple_repeat	47645.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	3.43100606339326	3.65925453320233	3.36697617040524	3.82260307333977	3.71993140741461	3.66782105801218	3.9265222003248	3.7611287168073	0.517639615079526	0.303642596415895	0.616281048482662
Merged-chr11-32271395-2	chr11	32271295	32271495	+	923.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-3688.0	NM_001284359	17168.0	Mm.263161	NM_181569	ENSMUSG00000020289	Nprl3	Aag|CGTHBA|HS-26|HS-40|Mare|Phg|Prox1|m(alpha)RE	nitrogen permease regulator-like 3	protein-coding	2.92324539626964	3.21041519207547	2.92363535535499	2.57375584084806	2.91095633030502	2.76870987238566	2.78988649835624	2.58720590163089	-0.692190228735859	0.316726552860783	0.628709891964907
Merged-chr10-117866914-4	chr10	117866861	117867061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20987.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	6.13643103376537	6.46468449539226	5.91728219538536	6.15031428199329	5.99628045766489	6.40939579892877	6.00138338782278	6.04963709916234	-0.101626053866176	0.689234585477718	0.873230947237404
Merged-chr8-106210947-4	chr8	106210847	106211047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007567)	promoter-TSS (NM_001007567)	-14.0	NR_152744	66432.0	Mm.269029	NM_001007567	ENSMUSG00000033106	Slc7a6os	2010007L18Rik|2400002F02Rik	solute carrier family 7, member 6 opposite strand	protein-coding	7.78247376952393	7.83500723687307	7.62099037219973	7.65782178086137	7.74086355511541	7.58082064251641	7.80541002212357	7.49738079581427	-0.0778949147883753	0.654676619970623	0.855659697629251
Merged-chr15-81836640-4	chr15	81836562	81836762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21664.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	6.82303021576595	6.55365375385926	6.46769619544066	6.69852348359686	6.93961005656596	6.76401116004751	6.76239729652702	6.70654986531292	0.22293924320471	0.282469281052071	0.594619849052298
Merged-chr19-5178816-3	chr19	5178726	5178926	+	765.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153129, intron 1 of 23)	RLTR13D3|LTR|ERVK	-60418.0	NM_008451	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	2.40686167388597	2.68248522933891	2.49010490184274	2.2573487126284	2.65610946420294	3.02259959912741	3.16076536023509	3.17453118586033	2.83032620276316	0.000118783055648578	0.00233901629296934
Merged-chr2-164834643-4	chr2	164834494	164834694	+	823.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001082974)	promoter-TSS (NM_001082974)	821.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	3.77125366965594	3.53378390261393	4.15171853302502	3.91372774620352	3.86969955387457	4.05015196551164	3.95851268581566	4.01964696514398	0.30679364243835	0.503222120300213	0.770264661753234
Merged-chr16-77084872-4	chr16	77084770	77084970	+	997.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 17 of 23)	intron (NM_013918, intron 17 of 23)	70801.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	4.83355047523398	4.87277337274934	4.75616732350305	4.61807128778577	4.96491192770871	5.18313972331147	5.08118045856662	5.07202199890767	0.62062657086448	0.0505331860869293	0.233168183715658
Merged-chr8-25090579-4	chr8	25090478	25090678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	11233.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	6.64109100463042	6.57271836863894	6.88398437605688	6.89695634757152	6.84912814122678	6.56025311386412	6.62392380982976	6.86611553592827	-0.0370617397172803	0.862598532225376	0.948225401948674
Merged-chr19-26845447-4	chr19	26845326	26845526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21519.0	NR_045306	70942.0	Mm.411548	NR_045306	ENSMUSG00000093772	4931403E22Rik	-	RIKEN cDNA 4931403E22 gene	ncRNA	5.17228423425475	5.27170376904939	4.88847968589379	5.13687261222149	5.21885451043631	5.31464974402477	5.0828809362686	5.34764857834231	0.212308076925173	0.479986083778784	0.755630297125111
Merged-chr5-122614497-4	chr5	122614384	122614584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358917)	promoter-TSS (NM_001358917)	60.0	NM_001358919	12589.0	Mm.10125	NM_009879	ENSMUSG00000029469	Ift81	AW060663|Cdv-1|Cdv-1r|Cdv1	intraflagellar transport 81	protein-coding	6.38394850916828	6.61621570436278	6.09694434462289	6.18452543011165	6.4942242656218	6.54296159250005	5.75125825853803	6.00330118541419	-0.133016741462933	0.637648462627206	0.846859692033839
Merged-chr1-52847795-4	chr1	52847708	52847908	+	913.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146108, intron 1 of 13)	MTC|LTR|ERVL-MaLR	2770.0	NM_146108	227095.0	Mm.222063	NM_146108	ENSMUSG00000041426	Hibch	2610509I15Rik|HIBYL-COA-H	3-hydroxyisobutyryl-Coenzyme A hydrolase	protein-coding	3.92163407217203	3.87323667151336	4.21386384391791	4.48313422418027	4.35747933707587	4.24844535281979	3.95951633740015	4.02453538104974	-0.00348471347795474	0.993908903214439	0.997721548251943
Merged-chr4-42965534-4	chr4	42965416	42965616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4430.0	NM_026088	67317.0	Mm.478018	NM_026088	ENSMUSG00000028451	1700022I11Rik	-	RIKEN cDNA 1700022I11 gene	protein-coding	5.55076640494093	5.29226059356698	5.14033306938673	5.45193905214009	5.54810935910977	5.61491339337229	6.07865548046982	5.74755048095254	0.655047329322502	0.0239288698870931	0.144182936569322
Merged-chr10-79924075-7	chr10	79924016	79924216	+	943.9523929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	RLTR12A|LTR|ERVK	-2927.0	NM_001288626	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	4.13577791644693	4.16428897965612	3.98741906200979	3.88604625688061	4.40780582061135	4.16336672909756	4.07118964684785	4.42552705815979	0.619355296176722	0.130277847049611	0.401764265429851
Merged-chr6-29523610-4	chr6	29523500	29523700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3025.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	6.73207585066486	6.78365519294526	6.28733530473784	6.56146130601625	6.86571577538753	6.61963419454379	6.72740209266443	6.95252712352289	0.279426229195241	0.202826725481707	0.505367754389162
Merged-chr11-69998955-4	chr11	69998927	69999127	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001291127, exon 3 of 4)	exon (NM_001291127, exon 3 of 4)	1565.0	NM_001291127	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	4.54018239801751	3.77987748021444	4.2264843909408	3.58948333577375	4.22867742663878	4.35554095003893	4.06752205498267	4.42899861724832	0.490078336926613	0.311456830501932	0.623500555132665
Merged-chr15-102406724-4	chr15	102406623	102406823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013672, intron 1 of 5)	CpG-5406	407.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	6.68086035880567	7.01593044761563	6.40276597766503	6.59436390909702	7.03547518398617	6.97849908361588	7.31963296526371	6.90576248767482	0.527025386200002	0.0191823424315158	0.124385529009098
Merged-chr3-96197210-4	chr3	96197126	96197326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026975, exon 2 of 2)	exon (NM_026975, exon 2 of 2)	360.0	NM_026975	69168.0	Mm.104531	NM_026975	ENSMUSG00000015943	Bola1	1810037G04Rik	bolA-like 1 (E. coli)	protein-coding	5.92287189622739	5.99210958759627	5.73008815102128	5.61362294592816	6.07573402457521	6.03013985226164	5.89370803837128	6.0677260983451	0.337157606515032	0.178094034133716	0.473852334381104
Merged-chr5-19951931-4	chr5	19951818	19952018	+	910.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015823, intron 1 of 21)	intron (NM_015823, intron 1 of 21)	44400.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	4.15272072274214	4.37063669363929	4.60549024487285	4.92902404668288	4.37796586514591	4.38530913220052	4.69222333546817	4.56379831382348	-0.13051176270938	0.752354748420036	0.902425600431109
Merged-chr8-88619320-3	chr8	88619194	88619394	+	646.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16834.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	3.17137475038607	2.90403210728795	3.0650649958699	3.26706523998418	2.74679367931708	2.70573047807176	2.74377271676303	2.94699148282234	-1.49716919544157	0.0214540328892942	0.134107017390627
Merged-chr1-131384645-4	chr1	131384549	131384749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-105086.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	6.83703594584067	7.24525046287044	6.86520985121653	6.55875298386448	6.79430322921572	6.6192685251075	6.68988528459859	6.81968141128878	-0.220379057890067	0.339189338445161	0.648487712540904
Merged-chr1-151500972-4	chr1	151500879	151501079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011277)	promoter-TSS (NM_011277)	12.0	NM_001360845	19821.0	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	8.03246203095001	8.04044438802772	7.88054226787567	8.04879454722728	7.74950843405139	8.23083151005762	7.96895545630901	7.79886546873277	-0.0770296020034783	0.666472983452571	0.862000851460164
Merged-chr15-103339547-4	chr15	103339438	103339638	+	908.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013866, intron 1 of 7)	intron (NM_013866, intron 1 of 7)	548.0	NM_013866	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	4.02835295106477	3.82654967172309	4.12304156206219	4.08660344022857	3.90723676516104	3.93901550428597	4.14884789170425	4.43872789592736	0.258552110012009	0.553725695389845	0.800354486026964
Merged-chr18-23903071-4	chr18	23902970	23903170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51618.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	6.89763549432023	6.98872936038696	6.89884435026629	6.89674409618788	6.54906382362818	6.54290528896965	6.59455410957043	6.57508807447419	-0.506687752531498	0.00942767445998186	0.0756797609548944
Merged-chr18-57549221-2	chr18	57549121	57549321	+	687.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027945, exon 2 of 4)	non-coding (NR_027945, exon 2 of 4)	2646.0	NR_027945	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	2.79026698846194	2.69202074624415	2.7906396082859	2.66307630755352	2.61866208326186	2.70662347738946	2.5264924782429	2.6014090811596	-0.594854030019254	0.3643992638673	0.669265956462516
Merged-chr1-78894384-7	chr1	78894291	78894491	+	918.107117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151519, intron 3 of 3)	intron (NR_151519, intron 3 of 3)	77480.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	3.58579326145895	3.25177013367134	3.90260764775607	3.4217620670112	3.52245043258281	3.34776688933507	3.46561283328353	3.42035537198411	-0.369656395615946	0.489883949747744	0.761966459176932
Merged-chr19-23085829-1	chr19	23085729	23085929	+	758.799988	f0_c57.idr	Intergenic	Intergenic	-55397.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	2.71756649111808	2.79554902950164	2.71781294636708	2.3269576904123	3.41882776667709	3.78014557906028	3.67712738703384	3.73659499557584	5.51740452970398	4.74050671954383e-12	4.5536373520973e-10
Merged-chr2-148531758-4	chr2	148531571	148531771	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88136.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	4.52857583247951	4.43622596583821	4.93468346562902	4.65955740784995	3.89561847267746	4.57872549680335	4.46786758294457	4.05134896894005	-0.887538525266761	0.0378906531808761	0.194702483595263
Merged-chr16-56064537-4	chr16	56064434	56064634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360073, intron 1 of 24)	(CAAAA)n|Simple_repeat|Simple_repeat	7004.0	NM_001360073	66315.0	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	6.56296738400833	6.07829529247978	6.86441697097411	6.70053974924407	6.35472285043225	6.04031089436701	6.48353511397174	6.12086693698845	-0.469690355446252	0.0733425239757028	0.291693999780217
Merged-chr2-70885867-4	chr2	70885761	70885961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-60381.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	7.35951981927748	7.34260799943639	7.17198479035832	7.52212486303252	7.00789664716126	6.80761326337327	6.95419339866066	7.30604099332469	-0.450017342146733	0.0263649567051122	0.153973683402788
Merged-chr9-99493466-4	chr9	99493377	99493577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 18 of 21)	L1MD|LINE|L1	23056.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	7.10478191767517	7.55298013080426	7.33505764086371	6.86998064545947	7.23606920187225	7.34144742924671	6.98390021467096	7.15944688425097	-0.0624793409519773	0.778908793768702	0.913802853320572
Merged-chr8-13627777-4	chr8	13627639	13627839	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 2 of 23)	intron (NM_009025, intron 2 of 23)	49848.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	5.32029484422175	4.99694395772244	4.84115478151585	5.32617065954411	5.14310137735818	4.56802584301492	4.85638366882264	5.01879662070371	-0.428254182364954	0.220518323503995	0.528451996377299
Merged-chr1-105742637-4	chr1	105742554	105742754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173187, intron 24 of 28)	intron (NM_173187, intron 24 of 28)	-38069.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	5.92358835476005	5.60127925523123	6.05476702239289	6.17877717612234	5.77459808821679	6.10014618495769	6.14100662047285	6.02967764561976	0.0665431838390021	0.803045065998086	0.923982127240574
Merged-chr12-76804086-2	chr12	76803986	76804186	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347406, intron 2 of 6)	intron (NM_001347406, intron 2 of 6)	-8532.0	NM_030677	14776.0	Mm.441856	NM_030677	ENSMUSG00000042808	Gpx2	GI-GPx|GPx-GI|GSHPx-2|GSHPx-GI	glutathione peroxidase 2	protein-coding	3.31162040803979	2.88328388761522	3.15813887187205	2.64215410175258	3.05535456717011	2.9615116488783	2.90913798732669	2.98151254415871	-0.159325948411903	0.805277270044528	0.925171083261684
Merged-chr11-115536342-4	chr11	115536252	115536452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133354)	promoter-TSS (NM_133354)	-122.0	NM_133354	170930.0	Mm.29923	NM_133354	ENSMUSG00000020738	Sumo2	SUMO-2|Smt3A|Smt3b|Smt3h2	small ubiquitin-like modifier 2	protein-coding	7.50253839569979	7.66027831820392	7.2742172369192	6.99453821045048	7.20730632557621	7.3061923734344	6.95828681508084	7.00105817494309	-0.336998233762331	0.130815293449006	0.402633476278078
Merged-chr5-28317013-4	chr5	28316918	28317118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028234)	promoter-TSS (NM_028234)	-171.0	NM_028234	381626.0	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	6.11851830096917	5.7514314479104	6.1393777752143	6.16959359707519	5.90974826294758	6.16952636706703	6.30592815175365	5.74797282210269	-0.019576423042931	0.940655532232782	0.978654793543509
Merged-chr14-66295935-4	chr14	66295843	66296043	+	894.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038077, intron 2 of 2)	MTD|LTR|ERVL-MaLR	-1082.0	NM_029979	66854.0	Mm.43871	NM_029979	ENSMUSG00000022043	Trim35	0710005M05Rik|A430106H13Rik|AW046487|HLS5|Mair|NC8|mKIAA1098	tripartite motif-containing 35	protein-coding	4.32389123243733	4.63161459913977	4.50043138158086	3.8422841147294	4.68818485934417	4.78930102841775	4.43808448350726	4.4974960124171	0.603937549864162	0.150363202748501	0.433002771293654
Merged-chr18-53236336-4	chr18	53236235	53236435	+	844.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	-9327.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	3.67111445015219	4.1146257302185	4.04828261891615	4.20760186159816	4.03536838062594	4.02122322247028	3.83134581918735	4.2198682691372	-0.0101238047237405	0.982052190060824	0.993573193675204
Merged-chr4-107935429-4	chr4	107935322	107935522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-11833.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	5.70984189591841	5.92529962919465	6.07286536791176	6.24601948077401	5.84021835217845	5.5655885704912	5.87472316669723	5.70680945808591	-0.420294576938659	0.11548004206792	0.376025664618916
Merged-chr2-29650272-3	chr2	29650179	29650379	+	861.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	L2a|LINE|L2	30559.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	3.32367425027964	3.79030618926984	3.18003825634407	3.20475521047958	4.09091220601751	4.00259456059236	3.94653898889545	3.45297067244818	1.52628652623634	0.00569233312324275	0.0523010677374961
Merged-chr10-96625788-3	chr10	96625673	96625873	+	653.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8772.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	3.28525390429694	4.06566227369969	3.71173125973569	3.08886458428316	3.53918539792781	3.33741661091004	3.00004016352924	3.08158558568411	-1.1301833733463	0.0868407727526223	0.321387166004207
Merged-chr8-69037917-4	chr8	69037810	69038010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153054, exon 17 of 17)	3' UTR (NM_153054, exon 17 of 17)	-50826.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	5.60660667052987	6.14828337364927	5.71123737836612	5.50702331175296	5.8477539860436	5.98093760025337	5.17289012990922	5.49090978349184	-0.16570187631385	0.606843992274738	0.82962736053248
Merged-chr2-126515219-4	chr2	126515113	126515313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-15366.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	5.41577050927545	5.48677901995572	5.75773413075154	5.71464258245628	5.76174679912849	5.25577534625172	5.60875491622334	5.55506602923494	-0.0656773784314613	0.817141052842558	0.929675415185979
Merged-chr13-45966197-3	chr13	45966120	45966320	+	900.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1229.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	3.37849406305153	3.38597523212916	2.9336437475668	3.07691880962061	3.16411886067055	3.49453638897555	3.41730470804594	3.37703376594009	0.583755602433563	0.300659021775078	0.612548544835798
Merged-chr3-103851088-4	chr3	103850936	103851136	+	946.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142960, intron 3 of 3)	intron (NM_001142960, intron 3 of 3)	-8759.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	4.79585718401707	4.29283678507612	4.52148005005054	4.4937016450663	4.66629242809631	4.38895353191693	4.19688573880236	4.11075429515001	-0.37857262755976	0.356806479311177	0.66317411451208
Merged-chr19-53142622-4	chr19	53142527	53142727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277100)	promoter-TSS (NM_001277100)	-129.0	NM_001277100	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	9.48805685483696	9.57004623989598	9.3123751638329	9.57968245668698	9.42891597893185	9.5671248423676	9.64339463162207	9.11410212961393	-0.049296196322107	0.766736771051041	0.908716130899153
Merged-chr2-120563803-4	chr2	120563677	120563877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011743)	promoter-TSS (NM_011743)	82.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	5.30232510503168	5.55251080198357	5.13720294539223	4.88999519872277	5.57948567813843	5.38340195986394	5.62573877264172	5.62682288603535	0.586804521076295	0.0559715723522313	0.247622633380538
Merged-chr17-55754577-4	chr17	55754477	55754677	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139138, intron 1 of 16)	L1_Mus2|LINE|L1	4593.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	5.10491984120911	5.18630362072201	5.26656685875211	3.9848570903397	4.48123092891557	4.80325206624546	4.51734410691659	4.12396420612111	-0.989949008463457	0.0377219675117944	0.194160398884647
Merged-chr5-134613893-3	chr5	134613756	134613956	+	711.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020044, intron 1 of 12)	intron (NM_020044, intron 1 of 12)	1169.0	NM_022964	56743.0	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	2.99467918491979	2.94991169810177	3.05395580771164	3.07473834317773	2.97021096094673	2.83305474860892	2.98455090759068	3.16185487717079	-0.122362314167289	0.834654479991555	0.93698515561029
Merged-chr11-102267613-3	chr11	102267491	102267691	+	571.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-1232.0	NM_148953	217217.0	Mm.216432	NM_148953	ENSMUSG00000034768	Asb16	-	ankyrin repeat and SOCS box-containing 16	protein-coding	3.84857975827806	3.69130437399209	3.42005546689041	3.42149248314315	3.87887218973248	3.65811351119037	3.52800251051812	3.80042047236803	0.398082725286675	0.420392916672899	0.713274332060183
Merged-chr5-118466563-4	chr5	118466454	118466654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58A|DNA|hAT-Charlie	-94165.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	6.1239430137696	6.03426646338253	5.60284859636409	5.6277244486919	5.55413696771247	5.63790363467602	5.30745727014178	5.486265653631	-0.596940414156327	0.0383366351569236	0.196352247803855
Merged-chr5-135010726-4	chr5	135010602	135010802	+	942.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145215, intron 2 of 5)	intron (NM_145215, intron 2 of 5)	1246.0	NR_033794	68758.0	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	4.61210969974697	5.0727904018681	4.52311671426622	4.51366972768697	5.46309938625036	4.70336317950739	4.63395856944639	4.98344588649359	0.61000658219512	0.124099757037344	0.390964897713886
Merged-chr11-108350984-4	chr11	108350844	108351044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7056.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	5.63102205030791	5.2677377899816	5.52409629700626	5.83473570175826	5.4800463063289	5.58344360836531	6.03361382858149	5.5752691354381	0.148848576947159	0.620195702960656	0.837084318577183
Merged-chr16-17182349-4	chr16	17182241	17182441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009456, intron 1 of 3)	ORR1D1|LTR|ERVL-MaLR	19151.0	NM_009456	22195.0	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	6.08359500161435	6.24255889246645	5.79892208683414	6.08855586052273	5.73582493543584	5.84655398537668	5.74475746806066	5.63762003413811	-0.524563898741572	0.0372735683699347	0.192582467752362
Merged-chr15-67991692-2	chr15	67991592	67991792	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	267164.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	2.54833130107727	2.45705680730585	2.54867703221471	2.49584291789145	2.35684517172678	2.24482254453471	2.21935919734224	2.22349197536792	-1.5611430534925	0.0454405220909376	0.218325188245342
Merged-chr7-99625882-4	chr7	99625747	99625947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001195529, exon 1 of 1)	exon (NM_001195529, exon 1 of 1)	1256.0	NM_001195529	100503386.0	Mm.180719	NM_001195529	ENSMUSG00000096606	Tpbgl	EG245190|Gm4980	trophoblast glycoprotein-like	protein-coding	4.61903605618424	4.45552870804274	4.57973751168162	4.3203668866538	4.51196725185635	4.58301060272919	4.90788184575181	4.83334083953849	0.504164422368699	0.163693418045947	0.453490592888819
Merged-chr14-26638896-4	chr14	26638801	26639001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	767.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	6.39418103027388	6.82752011676176	6.44971397951969	6.21853389773364	6.71944564870307	6.72846458167738	6.91917949257625	6.57957249928141	0.372777690571834	0.111471085362546	0.368917290310693
Merged-chr12-85602468-2	chr12	85602368	85602568	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	2450.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	3.84930594213741	3.65180910694441	3.8964957175109	3.68063486299454	3.34860048784826	3.8714223108692	3.68391371039501	3.79923031446411	-0.261431018366384	0.594040529250398	0.823266307249001
Merged-chr1-106932164-4	chr1	106932053	106932253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2296.0	NM_027971	71869.0	Mm.321740	NM_027971	ENSMUSG00000059956	Serpinb12	2300003F07Rik|4833409F13Rik	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12	protein-coding	6.05097755502212	5.72609955369487	6.22251138257286	6.26764511070092	5.89995106371167	5.68132985602705	5.7520382032736	5.7259638379368	-0.507032113095966	0.0545682007256376	0.243920031919125
Merged-chr8-106964860-1	chr8	106964760	106964960	+	670.333313	f0_balb.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	29110.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	3.57281735036749	3.48177472751156	3.52171102406069	3.55993658745607	3.61501956153996	3.1221436268423	3.39919152295911	3.51974470700883	-0.332953551221992	0.527155174834455	0.784187929900238
Merged-chr10-111164689-4	chr10	111164588	111164788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175489)	promoter-TSS (NM_175489)	-114.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	8.88383163083963	8.96179205194832	9.05523462529647	8.88744711890672	9.1245016384561	9.11613457701352	9.26470591455953	8.80001155549148	0.174621029822435	0.270426292346463	0.582296242549812
Merged-chr11-79520904-4	chr11	79520773	79520973	+	981.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077496, intron 1 of 1)	intron (NM_001077496, intron 1 of 1)	2889.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	4.80337982939185	4.68171213127397	4.34344250015261	4.21945698773646	4.7556510156363	5.04318021470573	4.59319838889003	4.86935320399868	0.647518153280623	0.0861111021049945	0.319784115236156
Merged-chr18-55197418-4	chr18	55197315	55197515	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-204824.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	4.83059793017722	5.10156471705835	5.14927090969148	5.54159346096113	4.73141197006652	5.04762398019869	4.9585077205008	5.17656236223767	-0.423528893400666	0.225311906042639	0.533672340883311
Merged-chr9-116161148-4	chr9	116161030	116161230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	14233.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	4.90049047408572	5.01743476805909	5.37585446797523	5.44684265811968	5.38983043059336	5.2681215198623	5.50707154913137	5.40006217832368	0.308408918627845	0.322392732867189	0.633942634212845
Merged-chr17-27038447-4	chr17	27038347	27038547	+	953.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9188.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	4.88812627449969	4.39584666747031	4.79775409987155	4.39690023726111	6.24115106307252	6.36326931708418	5.96320646008976	6.15124329329709	2.78463804010703	3.4318045044884e-21	1.34215611442296e-18
Merged-chr4-132573928-3	chr4	132573864	132574064	+	924.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	(TG)n|Simple_repeat|Simple_repeat	9897.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	3.9882902219968	3.83102955899718	4.0346828805401	4.16295584736859	4.15474018184195	3.59800480792701	3.82534065891752	3.83853455766955	-0.366898702504017	0.432694490786501	0.722611204268057
Merged-chr1-170901332-2	chr1	170901232	170901432	+	814.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	11609.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	3.19769972661098	3.18559600284576	3.46460394337211	2.82577570035507	3.198680841714	3.31163087109797	3.18597265222175	3.13595831760838	0.115786827888868	0.844552800809767	0.941096541929621
Merged-chr10-81606212-4	chr10	81606115	81606315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030677)	promoter-TSS (NR_030677)	-93.0	NR_030677	268319.0	Mm.131825	NM_001033363	ENSMUSG00000074862	BC025920	-	zinc finger protein pseudogene	pseudo	8.45419861300143	8.61696517312928	8.30285033328146	8.41097472743184	8.1020983580153	8.26725549997103	8.38627483482371	8.11050450430433	-0.295123241844992	0.0720771921888703	0.288483044467589
Merged-chr4-107367933-7	chr4	107367815	107368015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028355, exon 1 of 18)	5' UTR (NM_028355, exon 1 of 18)	131.0	NM_028355	72787.0	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	5.69179400689499	5.80923909379933	5.96451507437644	5.61974100471245	5.39568397875732	5.79010359503452	5.55932192410412	5.76233969199275	-0.237442001572572	0.383387153023295	0.685301023974684
Merged-chr16-55934805-4	chr16	55934673	55934873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028815)	promoter-TSS (NM_028815)	75.0	NM_001159364	74201.0	Mm.178427	NM_028815	ENSMUSG00000022604	Cep97	2810403B08Rik|4932439K18Rik|AA437768|E130116N02Rik|Lrriq2	centrosomal protein 97	protein-coding	6.94214328510945	7.08064392221164	7.7050930421856	6.97032755463549	6.87038117502651	6.85696384150065	7.05766603775781	7.06464108120406	-0.33388728566622	0.159784903521239	0.447504609393598
Merged-chr1-131511274-4	chr1	131511159	131511359	+	939.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	16102.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	5.11731936964416	4.85581274394647	4.6976439436475	4.96516155999633	5.0575827277684	4.55409979424306	4.71651980351005	5.14405255041197	-0.0412208879236905	0.906660672495674	0.965374636270914
Merged-chr8-105825696-4	chr8	105825604	105825804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145824, intron 2 of 13)	intron (NM_145824, intron 2 of 13)	1646.0	NM_145824	74334.0	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding	5.43555223263014	5.78770589157406	5.10922668587394	5.41327114035048	5.89448665804139	5.55304374752824	5.32024882846397	5.34302705205718	0.172647395530945	0.586087648926705	0.81854474174343
Merged-chr15-96286798-4	chr15	96286682	96286882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175251)	promoter-TSS (NM_175251)	-740.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	7.36881566137336	7.61211861781647	7.2064550788531	7.57182658496068	7.60669604269726	7.60714337953289	7.53109292133585	7.34434925851069	0.0920832417276962	0.624940427568074	0.839659374707287
Merged-chr19-25622717-4	chr19	25622625	25622825	+	821.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177360, exon 2 of 2)	exon (NM_177360, exon 2 of 2)	12188.0	NM_177360	240590.0	Mm.62785	NM_177360	ENSMUSG00000042372	Dmrt3	-	doublesex and mab-3 related transcription factor 3	protein-coding	3.65968575795729	4.26929192946785	3.95443697295181	4.23474309168142	3.90288106446673	4.27668485493474	4.03885322811332	4.50196863644088	0.340856104197449	0.46938067613568	0.748298852057462
Merged-chr9-3403308-4	chr9	3403220	3403420	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027545)	promoter-TSS (NM_027545)	-765.0	NM_027545	244672.0	Mm.245482	NM_027545	ENSMUSG00000025898	Cwf19l2	3230401L03Rik|9030209E10	CWF19-like 2, cell cycle control (S. pombe)	protein-coding	4.57980417007762	4.42277441295221	4.3999808565675	4.36860438434839	5.00036486474005	5.05076785393114	4.55938001394518	5.03309473806661	1.03723376903369	0.00306054261976936	0.0325095303883843
Merged-chr3-115643089-5	chr3	115642930	115643130	+	900.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	72025.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	4.17808867465873	4.18748999493351	4.30384802242074	4.20916091349741	3.63536399682072	3.82912419713062	4.11580156286458	4.17610637753037	-0.719395101644292	0.103954289298931	0.354362372356501
Merged-chr3-59130570-6	chr3	59130513	59130713	+	891.255554	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001287124, exon 1 of 2)	5' UTR (NM_001287124, exon 1 of 2)	149.0	NM_001287124	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	4.38591899456561	4.0005609566407	4.42675181495312	4.50833219556931	3.97113794559798	4.29066401753669	4.23914618125887	4.38378828881072	-0.315900640769604	0.448207027924417	0.733484953227545
Merged-chr6-53462099-4	chr6	53462047	53462247	+	881.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-111227.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	4.46012710561637	4.35011181126099	4.90014009002207	5.25458453330756	4.29666493590432	4.40317156019132	4.39656450246199	4.27067099942814	-1.04526929391006	0.013524055171174	0.0976395905293632
Merged-chr15-7876088-2	chr15	7875988	7876188	+	965.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081402, intron 17 of 17)	intron (NM_001081402, intron 17 of 17)	60538.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	2.89713791778843	2.73492183663714	2.72397996902388	3.02565548899754	2.26617603488474	2.69922485954793	2.44365943234338	2.52251104080701	-2.11729939506572	0.00813216709965437	0.0679482581618952
Merged-chr7-30090889-2	chr7	30090789	30090989	+	895.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152814)	promoter-TSS (NM_152814)	-379.0	NM_152814	72556.0	Mm.441512	NM_152814	ENSMUSG00000078768	Zfp566	2700043M03Rik|mszf4	zinc finger protein 566	protein-coding	4.136352964857	3.37789628248299	4.04792984640965	3.88007953494078	3.74894884676014	3.79857159210513	4.31425281220364	4.25702064125806	0.44188517798911	0.391699530983993	0.691351450352092
Merged-chr12-112761434-4	chr12	112761335	112761535	+	832.270813	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178911, intron 1 of 10)	intron (NM_178911, intron 1 of 10)	780.0	NM_178911	104759.0	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	3.34886887514884	3.27741085625736	3.50560607464259	3.30057374970537	3.28626712690384	3.34515619599818	3.09666978401582	3.3474994271743	-0.305426238432313	0.566277834824186	0.807835530970224
Merged-chr15-42962879-3	chr15	42962785	42962985	+	795.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	207933.0	NM_001357957	239405.0	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	3.44950374356176	3.48629400060556	4.07320224226055	3.79382381638453	3.19674332783538	3.62827436204945	3.37525265415835	3.90949224490195	-0.532134488235039	0.346827434763901	0.654983043837928
Merged-chr11-22990525-4	chr11	22990424	22990624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009837)	promoter-TSS (NM_009837)	-69.0	NM_009837	12464.0	Mm.296985	NM_009837	ENSMUSG00000007739	Cct4	2610204B21Rik|A45|C78323|Cctd	chaperonin containing Tcp1, subunit 4 (delta)	protein-coding	8.27279497297125	8.53318660892277	8.20311885562594	8.34883435191871	8.25293301529948	8.37469587610198	8.552792618521	8.30833278773964	0.0344265028102807	0.834352406278271	0.936829953336994
Merged-chr1-64343442-4	chr1	64343319	64343519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-189385.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	5.29559394685125	5.38057302006631	5.41460133254822	5.6665823517359	5.37054589043113	5.34265205348476	5.23934533670623	5.26155758751042	-0.281099896479167	0.330267616805501	0.641702208238215
Merged-chr7-28832383-3	chr7	28832281	28832481	+	901.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_016772)	TTS (NM_016772)	-1413.0	NM_010706	16855.0	Mm.210336	NM_010706	ENSMUSG00000053964	Lgals4	gal-4	lectin, galactose binding, soluble 4	protein-coding	3.51665098212136	3.44074464532108	3.57055306765382	3.72667146399614	3.58319784268102	3.32227764174663	3.50368438869869	3.66867953642297	-0.160255941660419	0.750138000641103	0.901576629816678
Merged-chr19-6365121-2	chr19	6365021	6365221	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360393, intron 1 of 11)	intron (NM_001360393, intron 1 of 11)	1431.0	NR_122118	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	3.88761564192576	3.55755829569452	3.75279984794777	3.25830288274873	3.58414433321947	3.60599566648343	3.47589739850498	3.54431892925783	-0.220323512834222	0.673278944936601	0.865713857717042
Merged-chr7-27232974-4	chr7	27232878	27233078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133770)	promoter-TSS (NM_133770)	-35.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	8.18931910313234	8.34417868878018	7.68178954825465	8.07346325022665	8.1901409157274	8.26899184078425	8.55546073686972	8.00580008279593	0.221800785524357	0.276598413663331	0.588579924847301
Merged-chr1-78507396-4	chr1	78507275	78507475	+	958.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3685.0	NM_026713	68393.0	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	4.54455841587195	4.06046704552025	4.73439428152851	4.79621618471717	4.63901689441879	4.06029552452427	4.8742557605427	4.62128709950598	0.0291121600327529	0.946964182640702	0.98101762641852
Merged-chr7-30308675-4	chr7	30308580	30308780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198027)	promoter-TSS (NM_198027)	-73.0	NM_198027	233065.0	Mm.276277	NM_198027	ENSMUSG00000042831	Alkbh6	AI839550|Abh6|C130099A02	alkB homolog 6	protein-coding	8.32114240386333	8.44628121660625	8.19456615496336	8.57876998719574	8.23530449671837	8.33500248484524	8.63647846801035	8.01187913187266	-0.0949406652694283	0.616796419523204	0.835164973848009
Merged-chr17-21423199-4	chr17	21423106	21423306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011760)	promoter-TSS (NM_011760)	-21.0	NM_011760	22712.0	Mm.12916	NM_011760	ENSMUSG00000023882	Zfp54	2810034D10Rik|KRAB10|Zfp-54|Zfp76|mszf83	zinc finger protein 54	protein-coding	5.95977122343101	5.84797422102905	6.45331279578725	6.22674633194913	6.17187214914924	6.20926429962335	6.95284405959104	6.27411700845139	0.448066194644874	0.119028485064199	0.381720183060508
Merged-chr16-92700226-4	chr16	92700126	92700326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-2897.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	5.85481871606094	5.26651248417056	5.68704713052755	5.96840852061647	5.83967518384208	5.47933190551952	5.78026861409751	6.09656559849572	0.144951642388601	0.629079320324318	0.841946429147748
Merged-chr13-58622822-3	chr13	58622716	58622916	+	960.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11939.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	3.62622182829106	3.95288266282661	3.68700844128311	3.36806741767226	4.41883624178504	4.17305964393275	4.19414690663938	3.56183473910809	1.26695872841657	0.0124633484526604	0.0922458853604986
Merged-chr6-128856431-4	chr6	128856338	128856538	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254946, intron 2 of 2)	RMER17C-int|LTR|ERVK	-30123.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	5.71256837959915	5.04000427810982	5.48947886883533	6.06237529072258	4.93292456456283	5.09918800917938	5.34852634673766	5.6148663197121	-0.647638071540046	0.0729168854826855	0.29055315410469
Merged-chr14-120479509-4	chr14	120479403	120479603	+	943.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029519, intron 1 of 1)	intron (NM_029519, intron 1 of 1)	1042.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	4.63801868662905	4.55341544540372	4.22820061089481	4.34393494521593	4.16414664871087	4.53823377194059	4.21009941271886	4.3630749422896	-0.299199735087974	0.446721883435967	0.732386500100067
Merged-chr4-12089364-4	chr4	12089243	12089443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356563)	promoter-TSS (NM_001356563)	-27.0	NM_001356563	77604.0	Mm.474129	NM_198957	ENSMUSG00000052137	Rbm12b2	AV299215|C430048L16Rik|Rbm12bb	RNA binding motif protein 12 B2	protein-coding	7.19598757162398	7.30089544026726	7.01035847360149	7.5301652808065	7.58836040778351	7.39768580060425	7.70454081072959	7.49863462064286	0.35419415275853	0.0751981373923876	0.29599780022412
Merged-chr5-99328516-3	chr5	99328411	99328611	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	MTE2a|LTR|ERVL-MaLR	-75584.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.05078455693125	3.35993654412951	3.68616531558353	3.48769680410053	3.39524408003683	3.49230414882043	3.52672040487354	3.43306877624161	0.143550504329787	0.790991896672291	0.918930451102165
Merged-chr6-120151899-4	chr6	120151808	120152008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	ORR1F|LTR|ERVL-MaLR	-41915.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	6.71889767507742	6.73249316091593	6.89681930903234	6.89946935463649	6.65209809355919	6.62110269008671	6.64147871182773	6.402168398553	-0.333912974620456	0.103115663298084	0.352733743669907
Merged-chr13-81136173-4	chr13	81136068	81136268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	172094.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	5.00855478460539	5.35664489709552	5.33786759033872	5.2327222784241	5.24235525847691	5.51048469321912	5.12597636077783	5.33414980692641	0.115350611403104	0.697655074016016	0.877977201438932
Merged-chr7-88242759-4	chr7	88242666	88242866	+	797.987488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35319.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	4.19983413324324	4.5821829678036	4.2478831200608	4.41215731725914	4.16546640191354	4.22553176721568	4.22944044309175	4.60707308682972	-0.143523271221187	0.720378823811504	0.888262296532504
Merged-chr12-99480564-4	chr12	99480495	99480695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-30521.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	5.48791561784054	5.78136042753807	4.93015253456518	4.94447801691077	5.58859226997142	5.46284225095997	5.40707351182067	5.21964393832964	0.173961107851157	0.614826014642595	0.834117577275116
Merged-chr17-34981976-4	chr17	34981879	34982079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030597)	promoter-TSS (NM_030597)	125.0	NM_001204274	27756.0	Mm.165735	NM_030597	ENSMUSG00000007050	Lsm2	D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	6.95426488403509	7.12320413578205	6.77561927453384	6.69121499108506	6.84623321050183	7.38707769324648	7.04249394777976	6.97606681756953	0.251125652371557	0.255665725465746	0.567305651004624
Merged-chr17-71704113-3	chr17	71704011	71704211	+	894.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177087, intron 10 of 19)	intron (NM_177087, intron 10 of 19)	30850.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	3.96712930840745	4.21319110266095	4.01535577533102	4.04341772539534	3.93203455782329	3.6242587317898	3.85124736865732	4.10302370430094	-0.470453838326147	0.290237776013235	0.602406731765695
Merged-chr3-88664306-4	chr3	88664191	88664391	+	960.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	-11149.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	6.01844509251787	6.4583469323283	5.88665969823687	5.15083683371964	4.80433996922309	4.6120815443921	5.01009439443445	4.82298151452315	-2.0424903601881	1.58510888710449e-07	6.52176101012777e-06
Merged-chr7-110787464-3	chr7	110787352	110787552	+	796.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009667, intron 2 of 14)	ORR1D1|LTR|ERVL-MaLR	14848.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	4.11594076559043	3.96718829448042	4.15509982348629	3.94818408235751	3.42204027878031	3.52030130219137	3.25147067090576	3.46680361376564	-2.04201810521785	8.57366021432696e-05	0.00178648875994022
Merged-chr12-5268130-5	chr12	5267960	5268160	+	820.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	107622.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	3.64509514341361	3.30755249868147	3.79562901564201	3.91079734606764	3.47650983049415	3.76345327380738	3.68227425237	3.58947167005097	-0.203180237204874	0.691906344783748	0.87467626526963
Merged-chr14-84442701-3	chr14	84442616	84442816	+	554.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013753)	promoter-TSS (NM_001013753)	-847.0	NM_001013753	219228.0	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding	3.01410341190054	2.90319588844123	3.26869480128352	2.88143713476637	2.84359832080706	2.80334784315253	2.68959893526506	2.62249386515836	-1.27253753228193	0.0556192746256925	0.246846511321996
Merged-chr16-55835976-4	chr16	55835893	55836093	+	962.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030612, intron 2 of 13)	intron (NM_030612, intron 2 of 13)	2648.0	NM_030612	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	4.80476736379092	4.80342847090887	4.73048883937617	3.94375296468748	5.27494919814699	5.04940085509826	4.66893848467809	4.56291403310814	0.651588246605582	0.128908446660088	0.39944165795213
Merged-chr1-63567240-4	chr1	63567138	63567338	+	944.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011780, intron 21 of 25)	intron (NM_011780, intron 21 of 25)	119689.0	NM_001081658	241073.0	Mm.297680	NM_001081658	ENSMUSG00000069085	Dytn	Gm215	dystrotelin	protein-coding	5.27800236617671	4.90185851992596	5.0123810426298	5.12731089439712	4.53185787725617	4.765638826243	4.77456927254526	5.0089542444854	-0.635086275760593	0.0599579541920642	0.258369489129249
Merged-chr13-56004005-4	chr13	56003928	56004128	+	854.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131522.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	4.70565789506639	4.68898405267649	4.56507546363591	4.39222796993827	3.99068391667289	4.40080492131359	3.9395916967728	4.3153292630074	-1.00777939317173	0.0139822055243253	0.0999136037562441
Merged-chr17-78245089-4	chr17	78244993	78245193	+	932.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	44845.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	4.75916543402292	4.67925511371794	4.5611196652086	4.67081603226701	4.8316790984511	4.64932013742153	4.5824233484128	4.99090979250161	0.226676601665533	0.50852118313024	0.773535236506654
Merged-chr15-53409401-4	chr15	53409309	53409509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63226.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	5.92949870255693	5.74682282246169	5.50196654933538	5.95112581976741	6.03184805735668	5.58802283598167	5.96236705510955	5.43683871289111	-0.0215196111648038	0.940496778287173	0.978622053353546
Merged-chr6-142715636-3	chr6	142715548	142715748	+	783.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13374.0	NM_001310143	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	3.8062318256731	3.5685667679945	3.750688887829	4.4220408955505	4.11285155792452	3.9272135723627	4.03780927857526	4.05321340212384	0.218799810114125	0.667591521230564	0.862545549902349
Merged-chr2-166719509-4	chr2	166719403	166719603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-5671.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	6.14824760553208	6.55013258444296	5.97016317439472	5.66300169895927	6.63131217986286	6.66959916791148	6.44527258725156	6.22580707118788	0.588127605026295	0.0350353820866873	0.185383843409777
Merged-chr6-54075665-4	chr6	54075576	54075776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	MLT1D|LTR|ERVL-MaLR	35744.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	6.05694068715122	6.13346510416277	6.19131122996063	6.43683915749135	6.61399130248579	6.83708372241542	6.91109560554806	6.56666651392099	0.737817382124592	0.00143597440111139	0.0180023011811065
Merged-chr4-34614904-4	chr4	34614809	34615009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015824)	promoter-TSS (NM_015824)	33.0	NM_001159563	50793.0	Mm.399624	NM_015824	ENSMUSG00000040044	Orc3	Orc3l	origin recognition complex, subunit 3	protein-coding	7.86234896198195	7.66987777597206	7.55162103750523	8.06124175131496	7.80379108946382	7.61221190107015	7.97568594919229	7.65357460273268	-0.0517419404071383	0.790454296399921	0.918840742585233
Merged-chr16-49700088-4	chr16	49699983	49700183	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028680, intron 1 of 10)	intron (NM_028680, intron 1 of 10)	789.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	6.71138433531652	7.27979340875725	6.54318663509087	6.24876197306616	6.79366731324854	7.05046129069689	6.25611946065363	5.74235162676607	-0.28725905073821	0.577681849875931	0.814201742353153
Merged-chr10-40087843-4	chr10	40087725	40087925	+	819.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	L1MC3|LINE|L1	54429.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	3.82389046861159	3.72833266096969	3.9260311400524	3.68986652056675	4.18236204512079	3.83365089484182	4.00238306444267	4.06219200268829	0.693741757904181	0.110037741205694	0.366324137378052
Merged-chr2-32757723-4	chr2	32757668	32757868	+	911.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290563, intron 14 of 14)	intron (NM_001290563, intron 14 of 14)	534.0	NM_152800	30933.0	Mm.200695	NM_152800	ENSMUSG00000009563	Tor2a	Prosalusin	torsin family 2, member A	protein-coding	4.21675920263566	3.91281152140792	4.02581502879438	3.57656128038193	4.24233104017033	4.62849039558537	4.24143029046714	4.25844830378566	1.05939318781039	0.0164810090942775	0.112183393547057
Merged-chr2-165852683-4	chr2	165852611	165852811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252584, intron 2 of 22)	ORR1E|LTR|ERVL-MaLR	5462.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	6.3493222782743	6.23770813695633	6.07181248049596	6.3122573520182	6.09076890621273	6.27129406299701	6.43646025609676	6.71409122284808	0.210326469801646	0.390950509758166	0.690867352703316
Merged-chr5-140620901-2	chr5	140620801	140621001	+	873.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175274, exon 14 of 14)	3' UTR (NM_175274, exon 14 of 14)	13560.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	3.12790375611081	2.9143560085076	3.18251897344109	2.93689731454873	2.95214153941389	2.84887950630425	3.00130961319612	3.23223752878104	-0.0968020731797614	0.87112310433532	0.951561821974214
Merged-chr1-86041043-4	chr1	86040948	86041148	+	803.829163	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb-int|LTR|ERVL-MaLR	-4815.0	NM_001144993	72792.0	Mm.54981	NM_001144992	ENSMUSG00000026227	2810459M11Rik	-	RIKEN cDNA 2810459M11 gene	protein-coding	4.38985727731529	4.0895168488585	4.02705756846283	4.17184634454717	4.07557270262103	4.15142680515158	4.44590674529482	4.38769797886452	0.234025588034443	0.565208149898099	0.80736405582173
Merged-chr10-128094813-4	chr10	128094714	128094914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054078, intron 1 of 29)	intron (NM_054078, intron 1 of 29)	2031.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	6.50638824109638	6.72127046355404	5.9632703503598	6.66332212018352	6.72461965493689	7.01100590825491	6.78764502049549	6.60110773632012	0.399629614094023	0.10700113105642	0.360805036120372
Merged-chr2-26932692-1	chr2	26932592	26932792	+	737.0	f0_balb.idr	intron (NM_011512, intron 1 of 5)	intron (NM_011512, intron 1 of 5)	819.0	NM_011512	20932.0	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	3.91608211520426	4.26987835592609	3.96623626238903	3.82832144638722	3.70868399269281	4.13676747330168	4.04215251819093	3.86302220804939	-0.171260770563039	0.706410068083363	0.882026349021226
Merged-chr7-4064071-7	chr7	4063993	4064193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113474)	promoter-TSS (NM_001113474)	-889.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	6.0876173870515	5.93952844402952	5.82591932421966	5.19828534495808	5.8306889240483	6.2630563209451	5.84360653444017	6.25049252292958	0.430728186528692	0.163868424048675	0.453728189028694
Merged-chr18-64887218-4	chr18	64887097	64887297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114386)	promoter-TSS (NM_001114386)	-559.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	5.99152784046544	6.04084637869817	5.94700508077497	5.93283885141926	6.27382447519995	6.23360497240789	6.43759528900015	5.89553908507474	0.388910050290658	0.107047799967251	0.360945303357126
Merged-chr13-99334221-4	chr13	99334138	99334338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 4 of 9)	RMER16_Mm|LTR|ERVK	10440.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	5.60449991392141	5.81756727168908	6.10852455868332	5.41144466107445	6.0388183521643	5.96368890824327	5.49082628609959	6.04634442239774	0.259138332301383	0.382152123301154	0.684238214631303
Merged-chr2-45692973-4	chr2	45692887	45693087	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3618.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	4.99917371156455	4.3697833073094	5.00003652423878	5.25718207442737	4.30674731697873	4.6052853076491	4.62472294759171	4.60202323083698	-0.891567800560053	0.0238004274553821	0.143554836526281
Merged-chr8-35433952-4	chr8	35433785	35433985	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58144.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	4.49125740238972	4.56454932993079	4.81407195518894	4.45121579151142	4.32327098254626	4.29695448541026	4.65838412781579	4.00086957524904	-0.552065298299753	0.170636360847019	0.463860583895888
Merged-chr11-106704156-4	chr11	106704050	106704250	+	968.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 2 of 14)	intron (NM_001305158, intron 2 of 14)	11131.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	4.97744181635251	5.00003666913689	4.91033664419086	4.54320885336075	5.11675866265947	5.08288771682201	4.53001943170964	4.71963003582494	0.0707234625064889	0.84679103789026	0.942018787399771
Merged-chr18-55624336-3	chr18	55624260	55624460	+	989.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-631769.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	4.43500925322444	4.38595678403305	4.7580735406934	4.71348068703158	4.01295440528332	4.18476830541507	4.19512312411415	4.16128749847325	-1.10670308066146	0.0052974938022411	0.0496667954886353
Merged-chr17-83682100-4	chr17	83681980	83682180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24083.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	3.93689275794394	3.95715782409315	4.81608267934213	4.64298607044996	4.59134203795859	4.18410029557764	4.85342553433871	4.60606697246973	0.39397493667957	0.405813061812452	0.702456276834042
Merged-chr19-53564418-4	chr19	53564321	53564521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35103.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	7.61461686209325	6.98856904404759	7.64544956961925	7.65794246948942	6.33810515570578	6.206929961144	6.06589862709335	6.09304758956684	-1.86428988046126	9.97107630007769e-15	1.54289399992006e-12
Merged-chr2-30514982-4	chr2	30514872	30515072	+	981.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40773.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	5.29619411431397	4.80165606047271	4.64675685142581	4.76762257748312	5.09111605601731	4.59005947231968	5.34738083484261	5.12174724238479	0.337274925796311	0.357307448572663	0.663494847536382
Merged-chr2-129491870-2	chr2	129491783	129491983	+	754.791626	f0_balb.idr|f1_balb.idr	intron (NM_177653, intron 1 of 6)	RMER13A2|LTR|ERVK	44719.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	3.8504243600843	4.1493368571844	4.05978557870772	3.83977539384197	3.07894496737805	3.18646056304981	3.13935002601652	3.35901520937628	-2.98031663135421	1.30319173623939e-06	4.44678257880075e-05
Merged-chr10-49050176-4	chr10	49050068	49050268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	737769.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	6.22217614131319	6.59602914681334	6.43880546086573	6.13993046471222	5.74240657334971	5.7570765401412	5.35537393277692	5.41262953861472	-1.22557776537741	7.48648041714784e-06	0.000212896599924957
Merged-chr9-41461855-3	chr9	41461745	41461945	+	878.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131928, intron 3 of 4)	intron (NR_131928, intron 3 of 4)	-13048.0	NR_131931	73144.0	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	3.59997823633299	3.41874721753989	3.54886880041724	3.50761387175504	3.50860282343253	3.49327384089349	3.63451339952846	3.37862478015185	-0.03536907106636	0.94253171819157	0.979183918526066
Merged-chr7-43626150-2	chr7	43626050	43626250	+	979.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8589.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	3.35132521595734	3.6310679456932	3.69316699531648	2.97773583902046	3.84735266314419	3.70831270294348	3.62664305762042	3.69092022537697	0.91421276106896	0.0966157017278612	0.340574096588254
Merged-chr6-58772239-3	chr6	58772154	58772354	+	739.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59211.0	NM_001361967	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	3.36164051066136	3.53277995107312	3.58251206154176	3.47632859453672	3.64811680149169	3.47496236827689	3.5167438791055	3.29902411471218	0.024684990755508	0.960893451442493	0.986028483619322
Merged-chr6-72899248-8	chr6	72899122	72899322	+	992.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347231)	promoter-TSS (NM_001347231)	70.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	4.9927151089883	5.19145835027516	5.59844005626264	5.06991009844572	5.44110295011244	5.64449816325569	5.21333906828395	5.385932876583	0.368439028654283	0.236343019877721	0.546367645725116
Merged-chr19-56811713-4	chr19	56811595	56811795	+	820.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170757, intron 1 of 14)	intron (NM_170757, intron 1 of 14)	1988.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	4.26133124517295	3.96414601852905	4.22153706025734	3.82903747280071	3.76128622925817	4.07035831352542	4.16049387612335	3.83861699467483	-0.288219750984243	0.523693404460523	0.782614071626827
Merged-chr5-112342506-1	chr5	112342406	112342606	+	577.0	f0_balb.idr	promoter-TSS (NM_138646)	promoter-TSS (NM_138646)	534.0	NM_001359388	70118.0	Mm.172947	NM_027323	ENSMUSG00000029346	Srrd	2810002G02Rik|Srr1	SRR1 domain containing	protein-coding	3.26287295907799	3.4133344111032	3.64934212547221	3.37354055670513	3.23960305815999	3.66768556833988	3.31399946410925	3.5986208168359	0.11038971320838	0.835040709495636	0.937172631913057
Merged-chr8-33601942-4	chr8	33601822	33602022	+	784.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017374, intron 1 of 6)	intron (NM_017374, intron 1 of 6)	2301.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	3.88364095117858	3.57311235726905	4.10126233761037	3.82473658326175	4.19865816149226	4.46215923658918	4.76008135288471	4.62589532554975	1.66271781103059	0.000135720902825904	0.00262441677322603
Merged-chr8-106972923-5	chr8	106972820	106973020	+	951.675537	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	37170.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	3.97987619452132	3.73388629625427	3.93415654252409	3.56564262143601	4.00033573174216	3.95711915497064	3.8201958499579	3.78201591047977	0.283304198632278	0.536120354774129	0.790213033830861
Merged-chr2-58907361-4	chr2	58907283	58907483	+	770.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	152199.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	3.93246146105587	3.73692433650812	4.0263639332762	4.19764170986583	3.90069353274533	3.84159731568192	3.81702611716902	3.88143744098827	-0.376712097990569	0.401371392871167	0.698995133800492
Merged-chr7-19816464-4	chr7	19816385	19816585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033601, intron 2 of 8)	intron (NM_033601, intron 2 of 8)	6270.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	8.2660112523242	8.40325597933862	8.35509704305262	8.08176877721682	8.23054402990801	8.25495921318803	8.23979521483675	8.1428048524085	-0.0738960284111646	0.645348011730163	0.850872932370267
Merged-chr2-152806234-4	chr2	152806123	152806323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	22266.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	8.14247784186665	8.01848794968497	8.36810636942993	8.2457565103079	7.71368853596904	7.65730974530747	7.6480069158671	7.8573379876321	-0.618493738121376	0.000261124293518285	0.00452903017329896
Merged-chr1-193200704-4	chr1	193200615	193200815	+	976.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153137, intron 2 of 15)	intron (NM_153137, intron 2 of 15)	831.0	NM_153137	215243.0	Mm.261259	NM_153137	ENSMUSG00000037318	Traf3ip3	6030423D04Rik|AI115021|T3jam	TRAF3 interacting protein 3	protein-coding	4.74580387659439	4.39552734713671	4.63057240086028	4.80486993658335	4.59863474015165	4.49240959409013	4.79517588551908	5.0668797990773	0.19643585997022	0.59476806079011	0.823594228119503
Merged-chr12-73737132-3	chr12	73737009	73737209	+	909.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 10 of 13)	intron (NM_008856, intron 10 of 13)	152313.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	3.30515242132967	3.47869579006172	3.47495490442016	3.48011661622333	3.38264451844267	3.07254961643349	3.56127727019081	3.5247345368961	-0.134349719480857	0.801736629023117	0.923515794948237
Merged-chr9-94275159-4	chr9	94275045	94275245	+	793.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	262936.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	3.92830581144151	3.69094127977567	3.53011295416212	3.86922476514677	4.47280425130319	3.88791978357153	4.29354650794968	4.19677894205929	1.27985503538048	0.00586602896669812	0.0533867888787375
Merged-chr11-96822836-3	chr11	96822724	96822924	+	743.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008686, intron 2 of 4)	intron (NM_008686, intron 2 of 4)	1107.0	NM_001361682	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	3.2412003632303	3.70207554425287	3.16743027252442	3.17704325424422	3.78581184182198	4.1238277237513	3.80478903499539	3.8659551284159	1.7542523555312	0.000844218334832608	0.011747921183783
Merged-chr17-42911768-3	chr17	42911682	42911882	+	869.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35358.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	3.67268455148214	3.44087603108491	3.34165447806497	3.60340816038163	3.80125480976702	3.57625828604814	3.44907994272501	3.46007412202145	0.201147471444462	0.690990392266724	0.874245896263794
Merged-chr3-108047138-4	chr3	108047044	108047244	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2285.0	NM_001160411	14865.0	Mm.31203	NM_026764	ENSMUSG00000027890	Gstm4	1110004G14Rik|GSTM7-7|Gstb-4|Gstb4	glutathione S-transferase, mu 4	protein-coding	4.73704736755387	4.85272111274022	3.88765310942556	3.9994445673643	4.4493352376268	4.72542319088768	4.2657667892393	4.92696489444722	0.387868725020986	0.41839182654023	0.711912368071791
Merged-chr9-78489095-4	chr9	78488981	78489181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7357.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	5.22098115971523	6.25203677274153	5.90221781063884	5.54949498225554	6.19038183823097	6.10067808508157	6.0225149361531	6.10895623291777	0.51029211444239	0.0914700937862428	0.330477397154424
Merged-chr1-55404633-3	chr1	55404553	55404753	+	961.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1293.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	3.81731265121053	4.0351945634154	3.91851951494791	4.25724958069521	3.91233903310039	3.76791052876999	3.63743666489667	3.81570997114568	-0.67917930074617	0.14175407213231	0.41887716291538
Merged-chr4-59534053-4	chr4	59533943	59534143	+	880.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178164, intron 1 of 13)	intron (NM_178164, intron 1 of 13)	15321.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	3.44593982000812	3.95414406616096	3.829349105134	3.82464031875243	4.31896096611302	4.25377717564963	3.91981611634913	4.43680034651794	1.22622957748278	0.00795213647601225	0.0669139522669436
Merged-chr5-123076281-4	chr5	123076166	123076366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039723)	promoter-TSS (NM_001039723)	-9.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	6.99162599048699	7.13697305098912	6.99284555359729	6.95791071151823	7.42938107559545	7.24532158852078	7.38993922813158	7.05107904448108	0.373591847981117	0.0508985948967995	0.234007950275112
Merged-chr3-34081290-4	chr3	34081197	34081397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286972)	promoter-TSS (NM_001286972)	57.0	NM_001026211	67713.0	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding	6.99599742654394	7.00342051928632	7.17633579792428	6.94196072267998	7.1725144151998	7.31910715305027	7.11797369516442	7.22570831486396	0.251016983044758	0.174989958648261	0.469686272733684
Merged-chr17-85495532-3	chr17	85495426	85495626	+	989.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122870.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	4.52331558781413	4.21638754711209	4.55851317690298	4.81932393523462	3.75180896403921	3.48917390995551	3.77620598657434	3.84838767484467	-2.27053497377392	2.7861894247113e-06	8.85349004738955e-05
Merged-chr11-70848645-4	chr11	70848525	70848725	+	863.3875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291143, intron 2 of 18)	B1_Mus2|SINE|Alu	3864.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	3.94515055090274	4.17962427904903	3.94572167575083	3.60691287047178	4.00718042164326	4.26161367320755	3.92919886023972	4.2181308377151	0.494105128448378	0.272424933537307	0.583870836296769
Merged-chr10-81298068-4	chr10	81297978	81298178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	5115.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	7.52002349409852	7.55488618579425	7.27005896004227	7.61306888597316	7.58253625129147	7.48044620776394	7.63777016127997	7.3918186956226	0.0332228485067739	0.854211916962088	0.945083547640389
Merged-chr2-163736117-4	chr2	163736014	163736214	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001272052, intron 2 of 11)	intron (NM_001272052, intron 2 of 11)	14125.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	5.38709359096726	5.52814471668082	5.52561007956506	5.8791650658494	4.87853088002834	5.16248850619993	4.99644119996989	5.64555756577729	-0.726067608620206	0.0290730965144302	0.163964340131577
Merged-chr15-64102126-3	chr15	64102052	64102252	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 25 of 28)	intron (NM_001276461, intron 25 of 28)	-41704.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	5.67221213998644	5.661497289817	5.73524719537121	5.77076835604062	4.00925661280397	4.43221188961475	4.27371305486513	4.51065717886364	-2.98822935005814	6.07206277979616e-16	1.14642800159976e-13
Merged-chr8-105497049-4	chr8	105496957	105497157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175160)	promoter-TSS (NM_175160)	-155.0	NM_175160	70796.0	Mm.100917	NM_175160	ENSMUSG00000039199	Zdhhc1	4432412D04Rik|DHHC-1	zinc finger, DHHC domain containing 1	protein-coding	5.87860299497745	5.72113461012642	5.92310986939237	5.72022944881026	5.80905420394015	5.81211562045045	5.40649334621221	5.73531396933527	-0.165162532582183	0.530006489180656	0.786108186984578
Merged-chr5-149053087-4	chr5	149052973	149053173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010439)	promoter-TSS (NM_010439)	-16.0	NM_010439	15289.0	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	7.78157922923299	7.68401021922867	7.73540447775476	7.60989614962329	7.84809611783082	8.0208868706463	8.09982561437337	7.47130287464946	0.235760364336403	0.219116120327446	0.526588317909918
Merged-chr10-17684031-4	chr10	17683935	17684135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39193.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	5.89634253317609	5.83941303277263	5.72272543695315	5.87725391965632	6.44421778678641	6.30484067486891	5.89025866595337	5.74511779223044	0.47188710344	0.0821218986184339	0.311117054891632
Merged-chr16-23136762-4	chr16	23136654	23136854	+	909.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9024.0	NM_145480	106344.0	Mm.386835	NM_145480	ENSMUSG00000022881	Rfc4	A1|AI894123|AU040575|RFC37	replication factor C (activator 1) 4	protein-coding	5.0802652423325	4.50519005302873	4.85745349688548	4.62922730819581	4.52497733206795	4.9214642303863	4.86814001956446	4.70610842506807	-0.038387799710298	0.915845016796353	0.968847922279075
Merged-chr7-140999497-4	chr7	140999398	140999598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11246.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	7.14291668859904	6.98740071348836	7.42208733565579	7.38321691596754	7.16946700766451	6.96477860443192	7.08510484141908	7.17323805765476	-0.200126472046935	0.314420293879906	0.626384801220807
Merged-chr5-142817872-4	chr5	142817780	142817980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122730)	promoter-TSS (NM_001122730)	-493.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	7.91846372443363	8.00039864554549	7.7522753523378	7.49070523963752	7.98612512264444	8.24497165649727	7.97076786646052	7.99044211966934	0.329678282517356	0.0795699690326642	0.305469544564802
Merged-chr7-118448762-4	chr7	118448648	118448848	+	927.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362179)	promoter-TSS (NM_001362179)	-526.0	NM_001362179	110058.0	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk|sytXVII	synaptotagmin XVII	protein-coding	4.26990607314556	4.59576977032334	4.57291755960925	4.30220891365222	4.06152573466516	4.583160723996	4.38887731598992	4.84477098127036	0.123838892646227	0.764514065301737	0.907727256922396
Merged-chr11-55008393-4	chr11	55008299	55008499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 6 of 24)	L2b|LINE|L2	25072.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	7.30805854174904	7.00935934230716	7.21543771964777	7.36959366963013	7.01436449504311	6.91098067050135	7.12413663783125	7.17747727882469	-0.243498352488795	0.210476456186358	0.514969877453898
Merged-chr19-16085273-4	chr19	16085179	16085379	+	988.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47552.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	5.07414662962087	5.10949185121238	4.78851051873747	5.09301414530952	5.21525763494706	5.14816134297359	4.50326897030963	4.93645692598846	-0.078896795434291	0.821285854368511	0.931619087929607
Merged-chr2-35979341-5	chr2	35979292	35979492	+	933.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029774, exon 1 of 10)	exon (NM_029774, exon 1 of 10)	232.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	4.71689182451928	4.67453598214496	4.8610656006163	4.61362438223859	4.70390314406491	4.55099356125393	4.57737521302834	4.95536815051101	-0.00488983624262785	0.988784092313656	0.995492522898152
Merged-chr15-25843169-4	chr15	25843062	25843262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034851)	promoter-TSS (NM_001034851)	-136.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	7.55821068958679	7.64132694069356	7.50486823143573	7.91867164211231	7.28694397904905	7.37891772404456	7.71906502131176	7.39293896943246	-0.297816895212971	0.132653508769701	0.405642655871397
Merged-chr15-67733193-4	chr15	67733122	67733322	+	889.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	506453.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	3.91397301265434	4.09195138523707	3.98007828152029	3.89794478524071	5.1190472809263	5.15702942179115	5.30005355125286	4.98051520073763	2.57985462549145	2.56889996009874e-12	2.55736685678138e-10
Merged-chr9-66895525-4	chr9	66895424	66895624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	24181.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	5.21719800159124	5.04247778869108	5.59253706218116	5.56950501284564	5.33025086283908	5.73974559467806	5.46101782257299	5.34176042642621	0.150780254564392	0.625923210209654	0.840129896434535
Merged-chr11-62693477-2	chr11	62693377	62693577	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35616.0	NM_133208	170740.0	Mm.339982	NM_133208	ENSMUSG00000005267	Zfp287	B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74	zinc finger protein 287	protein-coding	3.4538986205092	3.60728935449387	3.51101475816686	3.29845228036926	3.60534859677622	3.62699341972235	3.55095893455054	3.61530562896482	0.453686502386698	0.351712168571556	0.658976301197647
Merged-chr11-76578054-4	chr11	76577964	76578164	+	807.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198894)	promoter-TSS (NM_198894)	-325.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	3.82607524065927	4.16641461037911	3.58530747056142	3.90111451996839	4.04323973565324	4.37463131117744	3.91632745356673	4.11945211576374	0.610728504553436	0.180619067251946	0.477043671146927
Merged-chr2-29620137-4	chr2	29620018	29620218	+	886.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	CpG	398.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	4.18822499256602	4.47474010865718	4.50184537266381	4.03701115104515	4.38519148088882	4.78474646763295	4.35702065688153	4.45862290041413	0.467982087018466	0.241836969045482	0.55235892759878
Merged-chr18-4351878-4	chr18	4351782	4351982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 1 of 7)	intron (NM_007746, intron 1 of 7)	1071.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	5.61319077433687	5.25664761691572	5.28722576415056	5.07338597993897	5.27681993160779	5.29903655550717	5.60917152821831	5.4021124852265	0.170406650437578	0.573711519466522	0.811967547495324
Merged-chr5-149247283-4	chr5	149247190	149247390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17714.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	6.62165017626014	6.45301578683659	6.96791125614822	7.01973495841663	6.74070352587877	6.59411405139623	6.68052458414057	6.72461744464341	-0.155171316311711	0.493155395811162	0.764057026651923
Merged-chr9-80163525-4	chr9	80163414	80163614	+	988.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1520.0	NM_001039546	17920.0	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	4.82186336550303	4.89934890081056	4.58747917579724	5.12959416929796	4.67417959412709	4.84494636911435	4.79959475273587	4.35026609772236	-0.439014185445047	0.2309078918159	0.540396396919272
Merged-chr17-71288326-4	chr17	71288242	71288442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	22669.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	7.64392965606853	7.86125071515531	7.71673322878499	7.81315114281689	7.21311716070398	7.22759820377736	7.20743161662585	6.91997296374904	-0.820670905732251	5.80048266821807e-06	0.000169348874422106
Merged-chr11-115081093-4	chr11	115081014	115081214	+	911.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-10317.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	4.01887194015886	4.22881170710989	3.85271379971518	4.46570618606093	4.61928431505947	4.08916914236682	4.10247552879105	4.25474463613272	0.283404809120929	0.533654862285494	0.788889292681603
Merged-chr7-98178910-4	chr7	98178811	98179011	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007602)	promoter-TSS (NM_007602)	-637.0	NM_007602	12337.0	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding	4.60345115909932	5.38985897342245	4.24902074452639	3.69586643440463	5.4911227789084	5.26072163988847	5.17715392100292	4.60115537973126	0.967764218209877	0.205562792865247	0.509248774555215
Merged-chr12-46818843-7	chr12	46818717	46818917	+	967.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021361)	promoter-TSS (NM_021361)	-42.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	4.39655635407297	4.13412586795323	4.63416293617761	4.4500270015952	4.68483734981008	4.61176484393289	4.24174898524714	4.30474274531097	0.154016850182055	0.69688852768028	0.877493472584951
Merged-chr14-34312690-4	chr14	34312584	34312784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008133, intron 1 of 12)	intron (NM_008133, intron 1 of 12)	1957.0	NM_008133	14661.0	Mm.10600	NM_008133	ENSMUSG00000021794	Glud1	AI118167|Gdh-X|Glud|Gludl	glutamate dehydrogenase 1	protein-coding	5.07628358600269	4.81835129975439	5.07713809602379	5.24978534907393	5.03991986253993	5.00096332722218	4.95099590674896	5.19823432358134	-0.0514877268388725	0.871292147744766	0.951599337849259
Merged-chr17-6742301-4	chr17	6742206	6742406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 9 of 12)	intron (NM_009510, intron 9 of 12)	36476.0	NM_183368	83672.0	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	7.28629646778144	7.02592248499031	7.12535140284377	7.45262906782594	7.09617711229181	6.69263051313421	7.10097877106594	7.01191509498257	-0.343292169588226	0.101205197024682	0.349224757719099
Merged-chr15-102518067-4	chr15	102517980	102518180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009319)	promoter-TSS (NM_009319)	-112.0	NM_001253795	21357.0	Mm.291485	NM_009319	ENSMUSG00000023051	Tarbp2	Prbp|TRBP	TARBP2, RISC loading complex RNA binding subunit	protein-coding	8.69364215742429	8.8782117865779	8.59939303318702	8.67617567917128	8.85157510350368	9.16906438577116	9.04526432637996	8.86975647120301	0.33947848186544	0.0310708820801241	0.171322568457696
Merged-chr17-71133268-4	chr17	71133170	71133370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50262.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	5.76553046147724	5.47310127955987	5.64148029255701	6.07124460219129	5.77928386013558	5.52609708039912	5.78369153349151	5.5561559455058	-0.171828814843148	0.547595027421534	0.796923572329989
Merged-chr14-40949918-4	chr14	40949830	40950030	+	919.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	L1MC4|LINE|L1	-1721.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	4.03718484232279	4.18393446606221	3.77022357586435	4.44557711913873	4.20257400047182	4.16090865084687	3.92138022566087	3.88172077914454	-0.249971166072692	0.587007252402894	0.819013564908904
Merged-chr5-134522064-4	chr5	134521975	134522175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 3 of 15)	ORR1F|LTR|ERVL-MaLR	30359.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	6.51724137748247	6.53727127603688	6.43370619719529	6.58236895250828	6.54688559918844	6.59240614884758	6.69466168908609	6.11248402998888	-0.0247829511111613	0.912871774900944	0.967355963460984
Merged-chr17-8749584-3	chr17	8749500	8749700	+	711.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290707, intron 1 of 22)	intron (NM_001290707, intron 1 of 22)	-52145.0	NM_011866	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	3.48519895556727	3.25488429513314	3.23345313475946	3.24434990670042	2.93953310721781	3.02754577138669	2.97902945367344	3.11501119388359	-1.19158509630915	0.0402203271592852	0.202478440262449
Merged-chr2-66125122-4	chr2	66125029	66125229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015736)	promoter-TSS (NM_015736)	-336.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	6.27450724326915	6.31148247557537	6.77604432634255	6.69531175403294	6.09599071230949	6.28962788378704	5.96687049812947	6.48275841433299	-0.478189560975424	0.0584609842924219	0.254211888383548
Merged-chr2-148686449-4	chr2	148686349	148686549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355689, intron 2 of 5)	intron (NM_001355689, intron 2 of 5)	5329.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	4.85433684526843	5.56190430655129	5.18987038452093	5.29363539446887	5.07127075089287	5.57349818795715	5.22782317434745	5.47765204751708	0.157886071860354	0.62986841033695	0.842492220865196
Merged-chr6-119483130-3	chr6	119482974	119483174	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133940, exon 1 of 1)	3' UTR (NM_133940, exon 1 of 1)	3406.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	3.24178582937536	3.12591008972512	3.1853954283924	3.18495229854998	2.98690241625712	3.23643545703864	3.22954787187258	3.18373456793672	-0.107114223628784	0.845625660990772	0.941557049643182
Merged-chr12-36188450-3	chr12	36188377	36188577	+	968.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146033, intron 7 of 9)	intron (NM_146033, intron 7 of 9)	29741.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	4.02010199129099	3.88480068279471	4.25849657996528	4.52640287656109	3.43862677970008	3.23857163539885	3.3424350566664	3.42137132629321	-2.74595376589114	1.88261354309843e-06	6.20382173075016e-05
Merged-chr11-94211310-4	chr11	94211216	94211416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009427)	promoter-TSS (NM_009427)	-138.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	8.43660207891834	8.59517115831696	8.30835936280801	8.02538565853516	8.70515034794924	8.70973230057461	8.43907328519658	8.46786580176371	0.297700418089913	0.105172120037901	0.356750206451475
Merged-chr15-97343004-3	chr15	97342878	97343078	+	898.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 3 of 5)	MTD|LTR|ERVL-MaLR	-95691.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	3.16229104119742	2.94257325849619	3.06000571650017	3.08747895674236	2.68955645698537	2.56063831749351	2.75081816390943	2.68876863679952	-1.93596981104373	0.00483933558760516	0.0463855464301303
Merged-chr3-88492633-1	chr3	88492533	88492733	+	825.0	f0_balb.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	679.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	4.16112719124387	3.72471828250464	4.36466049427742	3.98656423541802	3.78366635667991	4.09625622308892	4.14294697474925	4.15914506962677	-0.0640144046295441	0.887580133381272	0.957799052224803
Merged-chr6-136904448-1	chr6	136904348	136904548	+	919.0	f0_c57.idr	Intergenic	Intergenic	17732.0	NM_026983	69187.0	Mm.33692	NM_026983	ENSMUSG00000030219	Erp27	1810033M07Rik|1810047B09Rik	endoplasmic reticulum protein 27	protein-coding	2.65298441695382	2.51078940769887	2.73303114228821	2.30852959324731	3.74500437331986	3.13342251861731	2.93777760847378	3.53309669750869	4.23132507240162	3.97319092041524e-08	1.87042167013384e-06
Merged-chr12-26464577-4	chr12	26464474	26464674	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4641.0	NM_020557	22169.0	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	5.31999785192693	5.63092382070929	4.97677501280245	5.36035277030984	4.8659453226179	5.11695196034173	4.63135442450544	4.55447647941242	-1.03464331478875	0.00313021869936007	0.033017714294414
Merged-chr2-167799763-4	chr2	167799620	167799820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108543.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	5.14489428851035	5.03574308474669	5.45031332018835	5.34583111569768	5.38028033424188	5.25272483901257	5.42291628881468	5.59899590587221	0.286626044841384	0.330642446437196	0.641981554220558
Merged-chr9-90233519-4	chr9	90233424	90233624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	37245.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	7.48035660274996	7.5433740321591	7.54522061031236	7.66633704824338	7.48478760279863	7.29425584133455	7.49027121172584	7.17223070380943	-0.257989098596282	0.15370291762336	0.438564097390891
Merged-chr15-102239412-3	chr15	102239300	102239500	+	825.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011244, exon 8 of 10)	exon (NM_011244, exon 8 of 10)	7100.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	3.63642588439881	3.39975690508685	3.84504575910336	3.25927827183802	3.98581158400359	4.01565759565021	3.87463222824609	3.6900265780011	1.08978335570828	0.0279307583877859	0.159903760257718
Merged-chr12-111430051-4	chr12	111429926	111430126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 13 of 13)	intron (NM_001289487, intron 13 of 13)	12581.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	6.58011440527763	7.17360709462985	6.8202693472336	5.8196399305795	6.99618234030392	7.37973705979125	6.57973566260528	6.23997726077647	0.248182708774725	0.624371880844376	0.839393596001854
Merged-chr19-41375241-2	chr19	41375145	41375345	+	690.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	9825.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	3.5649178757476	3.46126762800653	3.24257964174702	3.41255475167779	2.97420340714968	3.15585009830654	3.50179112841492	3.3006024258811	-0.662354093951031	0.24254059837033	0.553291388378231
Merged-chr2-160359095-1	chr2	160358995	160359195	+	590.666687	f0_balb.idr	Intergenic	Intergenic	7970.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	4.00369900383091	4.22348811168647	3.96041572272531	3.55529346095495	3.5979812693543	3.88972051763418	3.26177910759318	3.47706028163187	-1.14227039614854	0.0361698798154161	0.189080489015849
Merged-chr5-99218465-9	chr5	99218401	99218601	+	887.1851810000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145839, exon 14 of 14)	3' UTR (NM_145839, exon 14 of 14)	34426.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.58467915115975	4.789251870252	4.01941488674302	3.65362795644075	4.83802407048595	5.02982618246982	4.40137851527254	3.89517544831086	0.543697670023821	0.484873928781864	0.758880279356098
Merged-chr12-52783164-3	chr12	52783082	52783282	+	836.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198111, intron 1 of 13)	intron (NM_198111, intron 1 of 13)	83799.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	3.59886159530006	3.54063915142796	3.86812669867462	3.61149621736895	2.99724505370045	3.43736875716098	3.11357301128302	3.32029682776084	-1.60201935485993	0.00488245061581935	0.0467170254581806
Merged-chr11-90249339-4	chr11	90249246	90249446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026178)	promoter-TSS (NM_026178)	-130.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	9.35063717218995	9.3574363918296	9.32973367445435	9.2119682557279	9.16535015513262	9.2832408249773	9.41480126668392	9.03055675877146	-0.100125119396704	0.503447982872045	0.770381746164637
Merged-chr10-34129690-4	chr10	34129644	34129844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-1772.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	5.56387979181739	5.37049153337051	5.43639488935584	5.39557360073996	5.35443266791949	5.04663990766799	5.00035769403402	5.2275030268168	-0.475337131782278	0.107815081626859	0.362194152119983
Merged-chr5-99423183-4	chr5	99423076	99423276	+	916.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-170249.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.15929529676712	3.82048537927858	3.71836584729082	3.72005916063448	4.17351580856248	3.95288691676786	4.3985620696722	3.38987551800292	0.451293181363844	0.392610268222008	0.692052352247535
Merged-chr13-43549959-4	chr13	43549854	43550054	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081059, intron 4 of 8)	intron (NM_001081059, intron 4 of 8)	10237.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	5.67952793500564	4.96408262140283	5.26293668810497	5.03039053514278	4.89073838178156	4.99212145005174	5.11505769632268	4.96522633313365	-0.498093508793589	0.142534652182523	0.420143331819144
Merged-chr5-80706849-3	chr5	80706758	80706958	+	726.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-313713.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	3.13853491481275	3.3180903175497	3.62626623924295	2.8534262675329	4.32006360612914	4.16106121734941	4.13446537037148	4.0711655758876	3.02362346765644	3.85887127652951e-08	1.8238419561228e-06
Merged-chr14-27356343-4	chr14	27356238	27356438	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-5051.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	5.65624372010472	6.26956596556046	5.92278402671065	5.81281784609736	5.72595636323119	5.91102553904828	5.73109692520115	5.38586304262982	-0.380147316091092	0.179441424679488	0.475667183458399
Merged-chr9-21927479-4	chr9	21927380	21927580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253870)	promoter-TSS (NM_001253870)	9.0	NM_025977	67119.0	Mm.154305	NM_025977	ENSMUSG00000006241	Ccdc159	2510048L02Rik	coiled-coil domain containing 159	protein-coding	8.40698503780889	8.55369468985599	7.85387439407456	8.18966952833675	8.09678946538996	8.34854445651227	8.09516514481959	7.91721725731241	-0.198268960922827	0.323560805783274	0.63505031144454
Merged-chr14-70078725-7	chr14	70078626	70078826	+	847.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289925, intron 2 of 2)	CpG-4626	931.0	NM_001289927	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	4.04798217855845	3.91541449070021	3.40338792400429	3.82566236491847	3.8653536191847	3.83040308906398	3.75035467906895	3.91256787335472	0.0621492299647487	0.896300622266497	0.961051021717019
Merged-chr2-79628789-2	chr2	79628683	79628883	+	733.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-6642.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	3.47750712222696	4.01141430524463	3.14040939223026	3.60853488874456	2.72340115855579	2.89032242329707	2.77044635680543	2.93236657636724	-3.73213503843085	5.50705573154951e-06	0.000161577378366019
Merged-chr19-6996155-4	chr19	6996060	6996260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027351)	promoter-TSS (NR_027351)	29.0	NR_027351	107328.0	Mm.391161	NM_153597	ENSMUSG00000047656	Trpt1	AU079016|AW045591|Tpt1|Tpt1h	tRNA phosphotransferase 1	protein-coding	6.16367096088858	6.05865265519911	5.81015090898696	6.09936682918868	6.2847165402881	6.10837969400957	6.3283579527884	5.58360376335764	0.111083149130399	0.68117898701702	0.869167487395749
Merged-chr9-61022720-4	chr9	61022650	61022850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5681.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	7.41843503416237	7.67824348012812	8.06057825027625	7.59821415270193	7.68826647057771	7.86585776818047	7.91914693111928	7.82484727487723	0.15363940793123	0.430956866980189	0.721325279470979
Merged-chr4-137994205-3	chr4	137994086	137994286	+	861.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256195, intron 2 of 34)	CpG-10542	730.0	NM_172703	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	3.36642319782432	3.34868278914244	3.6790378565858	3.08991401359201	3.47238006969919	3.59655042364322	3.23262503271306	3.53034803780704	0.298869591115989	0.584130154565036	0.817543313050016
Merged-chr5-129942588-7	chr5	129942515	129942715	+	893.654785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001327, intron 1 of 1)	CpG	506.0	NM_027121	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	3.67976010074364	3.39826865984334	3.46742824977121	3.60433212088429	3.44663645082253	3.69508734166965	3.39617208679914	3.72611068189407	0.0797932500401179	0.872852796846767	0.952329867778884
Merged-chr16-87746929-4	chr16	87746814	87747014	+	923.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	47960.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	4.68754700563151	4.90423948665612	4.32935982665643	4.56802470081	4.85265690275012	4.60767461693805	5.00482961989443	4.83298508778033	0.410792444034866	0.250920937726	0.562191344368554
Merged-chr10-10460332-3	chr10	10460234	10460434	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	L1MEd|LINE|L1	11980.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	4.33328464431801	3.96928706007766	4.00269175467448	3.96567993597192	6.61088759875404	6.11176807564945	6.04154954799693	5.23593760896567	3.88584160626307	7.97098491436847e-20	2.60259970284327e-17
Merged-chr8-33668400-2	chr8	33668300	33668500	+	802.666626	f0_c57.idr|f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	15162.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	2.72790486805876	2.58036253537961	2.64338763887287	2.25116719323332	3.69683592412099	3.33795028200262	3.55609489694459	3.57216098284503	6.43839251127263	6.69067407689292e-13	7.34931311912286e-11
Merged-chr11-117873433-4	chr11	117873333	117873533	+	971.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027919)	promoter-TSS (NM_027919)	93.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	4.87446011146568	4.72327953205284	4.72334246961133	4.71861989298186	4.73983790820934	4.8989032752671	5.04855745971265	5.15861732655003	0.418187903635813	0.20468886450559	0.508127809669146
Merged-chr15-25144414-4	chr15	25144307	25144507	+	663.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	269357.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	3.5831502476369	3.95116229473679	3.52480422453271	3.59052706344428	3.79965309195403	3.70043623814789	3.73020204639526	3.84101898830605	0.293724702710405	0.533053075188694	0.788425418478432
Merged-chr11-82088154-4	chr11	82088055	82088255	+	807.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13690.0	NM_011331	20293.0	Mm.867	NM_011331	ENSMUSG00000035352	Ccl12	MCP-5|Scya12	chemokine (C-C motif) ligand 12	protein-coding	4.22719569363148	4.41822190994017	4.18017911782375	4.23959155939641	4.09559348649729	4.57263969490001	4.16230443213506	4.51641802764174	0.180445183962313	0.654006413058519	0.855370583745682
Merged-chr14-70520142-2	chr14	70520042	70520242	+	745.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011359)	TTS (NM_011359)	118.0	NM_009755	12153.0	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding	3.2440512410436	3.65204036325678	3.80903271349118	3.73277414825178	3.30767857177952	3.83349378111268	3.54293656023403	3.66161410381602	-0.111428686489006	0.834464108880973	0.936888323107459
Merged-chr19-53568023-4	chr19	53567941	53568141	+	938.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4-int|LTR|ERVK	-32355.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	6.12980366762406	5.44498544917816	6.14743478274482	6.0201477367592	5.11957942666294	4.96516495125792	4.79866096503942	4.7233694005223	-1.85498059267549	2.83805927027943e-08	1.37421918911034e-06
Merged-chr9-64340647-4	chr9	64340548	64340748	+	956.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172519)	promoter-TSS (NM_172519)	125.0	NM_001177784	213550.0	Mm.268341	NM_172519	ENSMUSG00000032396	Dis3l	AV340375	DIS3 like exosome 3'-5' exoribonuclease	protein-coding	5.24189114743725	4.91827323437965	5.21342175334897	5.11425842863262	5.12806278073418	4.70571038691806	5.03075615519181	5.23914293233863	-0.146579723961183	0.648798281984078	0.852432727220627
Merged-chr4-142021407-4	chr4	142021308	142021508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131014, intron 1 of 1)	intron (NR_131014, intron 1 of 1)	3510.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	6.70373099283378	6.41611147166747	6.65920214335611	7.09205069132105	6.64383111378729	6.46198194356448	6.75704732856017	7.19897681820851	0.05684160855525	0.826662899284059	0.933495764252694
Merged-chr13-9261933-4	chr13	9261833	9262033	+	989.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14592.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	5.42389131591167	5.49573002943543	5.70338619101876	5.92988164983272	5.21615153897221	5.13202819874267	5.00550722832086	5.23863997108751	-0.917599355449462	0.00233420769633207	0.0263432011443191
Merged-chr2-122160870-4	chr2	122160775	122160975	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_080510, exon 1 of 7)	5' UTR (NM_080510, exon 1 of 7)	175.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	4.58971094930564	4.43336597927687	4.36228276911189	4.56616499347184	4.99221327012408	4.95588683007824	4.79661238107051	4.85112794036173	0.853783342466663	0.0119343301929415	0.0895502518240967
Merged-chr1-153910607-4	chr1	153910505	153910705	+	924.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008131)	TTS (NM_008131)	10676.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	5.47380035013463	4.85891235402562	5.24163613492229	5.10298798810073	4.7690567920379	4.85655091254603	4.99979089574078	4.79979945053551	-0.633711445102552	0.0577956657977021	0.252382680724825
Merged-chr2-155276390-4	chr2	155276312	155276512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025735)	promoter-TSS (NM_025735)	48.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	7.41817444847795	7.57713844341084	7.16013582307844	7.21233527842108	7.49247923595671	7.63493245659558	7.46730012544677	7.56141432927556	0.253059677054542	0.175359546411063	0.470057887850911
Merged-chr1-92742534-4	chr1	92742401	92742601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89144.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	6.20931535018919	6.16330879148301	6.40631544751918	6.640845227164	5.89933213480603	5.98409069478259	6.01503823211471	6.10577136089394	-0.592645578368248	0.0160340347238751	0.109852651038219
Merged-chr9-21131361-4	chr9	21131251	21131451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018793)	promoter-TSS (NM_018793)	-76.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	8.01854139757578	8.22636215146534	8.14927809926196	8.33456889355145	8.10767845622484	8.27672081219188	8.07961505451352	7.93720597761403	-0.114357836223002	0.496044006220626	0.766048551550322
Merged-chr3-94595957-4	chr3	94595861	94596061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44A|LTR|ERVK	-13245.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	6.50029715105083	6.79051719435397	6.32441723974538	5.80286597297705	6.05913704817863	5.77931251722276	5.76560518916833	5.6816822354022	-0.863699298373436	0.00428744276593675	0.0423443719490235
Merged-chr10-13687400-3	chr10	13687298	13687498	+	649.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 4 of 5)	intron (NM_025446, intron 4 of 5)	-134256.0	NM_001347361	56535.0	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	3.44946101986584	3.57265882738377	3.3395600941275	3.66035742620744	3.23434721248591	3.39254349515456	3.20826653324904	3.15280014363279	-0.984655444007747	0.0676983688947471	0.27778302874037
Merged-chr13-111805093-1	chr13	111804993	111805193	+	1000.0	f0_c57.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	3900.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	5.96673480543577	5.78579135383686	5.96778656072845	6.16121991367497	5.86508026288985	5.73468561428821	6.12036539818014	6.16633942513807	-0.0114281552127563	0.96452894361146	0.987424880903373
Merged-chr7-141476818-3	chr7	141476741	141476941	+	915.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252588, intron 1 of 7)	intron (NM_001252588, intron 1 of 7)	461.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	4.06894812972162	3.77536185408008	4.1572476539426	3.77454794799935	4.01269382664354	3.94097603940427	3.95848345898289	4.15458722446668	0.214095199140197	0.624068697674125	0.839275735925487
Merged-chr7-144915076-4	chr7	144914923	144915123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347537)	promoter-TSS (NM_001347537)	-77.0	NM_001357868	72284.0	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	7.51584565252591	7.46484605249376	7.39526917551667	7.55426094823959	7.1671650224481	7.26167455518844	7.28791316797478	7.4384039790076	-0.268490478640011	0.129999100645637	0.401353545211703
Merged-chr11-103019073-4	chr11	103018953	103019153	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1906.0	NM_026551	68087.0	Mm.277449	NM_026551	ENSMUSG00000020935	Dcakd	3010024O21Rik|6720485C15Rik|AI849483	dephospho-CoA kinase domain containing	protein-coding	5.4169617590532	5.70794178764846	6.12615906950196	6.03202889901375	5.43127887914585	5.28232037001632	5.83636459200189	5.90583299901703	-0.360793457195913	0.246629583299194	0.557845724670417
Merged-chr6-13609471-4	chr6	13609357	13609557	+	829.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1359.0	NM_028990	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	3.71494814002317	3.62998555961858	3.53908126718573	3.87975498514257	3.98580132078114	3.99186462076869	3.80534950773842	4.04987381395711	0.707831986794986	0.124103714238422	0.390964897713886
Merged-chr13-113618507-4	chr13	113618414	113618614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130796)	promoter-TSS (NM_130796)	50.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	8.02902271138129	8.27790056074614	8.17797451920247	7.86058432174322	8.31623639037274	8.39735387371914	8.39006489801318	8.05194357958836	0.263552981039631	0.138425376835127	0.413889099884774
Merged-chr8-69088639-4	chr8	69088528	69088728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007509)	promoter-TSS (NM_007509)	-108.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	7.78569877052486	7.75730246633556	7.65462366471408	7.53126943043549	8.04282878983771	8.21283465983729	7.87566841740789	8.04913859297301	0.480938265267888	0.00491353621499997	0.0469450462077158
Merged-chr4-55364536-3	chr4	55364429	55364629	+	728.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009011, intron 1 of 9)	B3|SINE|B2	14487.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	3.3277339609192	3.44292187328162	3.32815715502991	3.34792124525505	3.53689950449826	3.3184286170789	3.3159186690772	3.26785129003793	0.033768810519518	0.948043896404606	0.981359015857754
Merged-chr2-26962916-4	chr2	26962808	26963008	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207234, intron 1 of 7)	intron (NM_207234, intron 1 of 7)	1478.0	NM_207234	227656.0	Mm.291874	NM_207234	ENSMUSG00000052406	Rexo4	Gm111|Rex4|Xpmc2h	REX4, 3'-5' exonuclease	protein-coding	5.206230006496	5.79828130244675	4.98764331952439	5.15242557822311	5.60426755917438	4.95885738153254	5.76104893721143	5.65259737749643	0.361316316823507	0.304960854114517	0.617495196285301
Merged-chr11-48856971-4	chr11	48856859	48857059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14461.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	5.26610282541111	5.83755962234253	5.266997722019	5.30568070515739	5.40151683972115	5.9106006588153	5.3370662625211	5.84429142489964	0.339669359454471	0.286082707734094	0.597648539968451
Merged-chr2-45105852-4	chr2	45105749	45105949	+	903.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	4428.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	3.64214858790047	3.85964500382287	3.48797153551673	2.84241417680471	3.56257431923897	3.29658556598964	3.52648564292974	3.17988335836092	-0.376670482852917	0.551436768388119	0.79892812604468
Merged-chr3-59264199-4	chr3	59264110	59264310	+	981.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 35 of 43)	intron (NM_177855, intron 35 of 43)	-1225.0	NM_001357010	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	5.48632802738413	5.22963007809415	4.62747394042942	5.0152022691415	5.51715105789483	5.57967802168333	5.53488440016198	5.34562575640607	0.675594942611243	0.0365345034012874	0.190219400014647
Merged-chr11-77493246-4	chr11	77493140	77493340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004144)	promoter-TSS (NM_001004144)	-172.0	NM_001004144	216963.0	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	6.48332654373703	6.68320350987933	6.26453425500061	6.4347917825515	6.31662630522407	6.51901947120675	6.72127265536099	6.57684905376781	0.0855993751321115	0.705105958807966	0.881587544161158
Merged-chr1-154076186-3	chr1	154076085	154076285	+	818.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-125002.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	3.99386099857515	3.83199360777841	4.0820050318978	3.80955175450729	4.17746184816207	3.80753683754857	3.67487551642412	3.56694978312441	-0.240625338409797	0.618765332279909	0.836062966920086
Merged-chr10-80960985-4	chr10	80960871	80961071	+	852.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	30880.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	4.06441448038638	4.38926080983392	4.39761340036088	4.4189104133189	4.29999273405216	4.39252655109424	4.41843402557705	4.51444934616272	0.165166394943422	0.666302959165324	0.861928946104038
Merged-chr18-35117062-4	chr18	35116966	35117166	+	950.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1846.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	4.74547050589974	4.60761416794029	4.95512515765541	5.08939610227606	4.74782782393968	4.53195044482682	4.64665897753978	4.74312378288696	-0.421660148961503	0.232581314445938	0.542164234902269
Merged-chr4-48046769-3	chr4	48046671	48046871	+	851.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015743, intron 1 of 7)	intron (NM_015743, intron 1 of 7)	1466.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	3.24788302155116	3.08025443482624	3.19086037852273	3.1414777638926	2.9889368012023	3.17870558383288	3.05746868237565	3.54482348101514	0.164074720205402	0.775142512341007	0.91224145329603
Merged-chr7-55846356-4	chr7	55846255	55846455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 1 of 30)	ORR1C2|LTR|ERVL-MaLR	4284.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	6.19849190939816	6.58685820869309	6.07594246485946	5.58174457694883	6.36516251159181	6.43285735736922	6.46218691036628	5.91041479096477	0.242410325898377	0.418633770368777	0.711983492809882
Merged-chr2-84888850-1	chr2	84888750	84888950	+	617.0	f0_balb.idr	Intergenic	Intergenic	-2158.0	NM_199223	269295.0	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	3.17647438429341	3.34802467719693	3.58259596901557	3.35686897247142	3.10908024618803	3.35695864218294	3.74956965532966	3.62916274582566	0.368045248786269	0.509222135410114	0.773939794084438
Merged-chr2-102839288-3	chr2	102839187	102839387	+	951.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 6 of 13)	intron (NM_001039150, intron 6 of 13)	62378.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.32077105024887	4.02544398399257	3.99147462861346	4.28082441436094	3.90967158436938	3.85114389534445	3.46800184897558	3.60887436541978	-1.23646852166234	0.0101948595762626	0.0800154272553525
Merged-chr1-43935320-3	chr1	43935184	43935384	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009418, intron 1 of 29)	intron (NM_009418, intron 1 of 29)	1290.0	NM_009418	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	3.19572019973716	3.08516236651481	3.13592095097056	3.04044542281329	3.06558367068228	3.11702547590574	3.29517321452357	3.55065697893938	0.598007257603218	0.285400795170786	0.597105888507119
Merged-chr16-34304069-2	chr16	34303969	34304169	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 9 of 59)	intron (NM_177357, intron 9 of 59)	209958.0	NM_001164268	545156.0	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	3.37105008853349	3.72604744867573	3.37144802048712	3.23919380821513	3.98316409193351	3.48705115227054	3.78729094980473	3.75530669007615	1.06495215690512	0.037425011737163	0.193118378312275
Merged-chr8-14893555-3	chr8	14893464	14893664	+	907.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	5028.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.81562425587067	3.48234568027518	3.86134286613797	3.62305005592173	3.1957297049802	3.5624442294947	3.75280177102	3.56094984554539	-0.550494175070592	0.292615386611866	0.604987499921338
Merged-chr1-37638790-4	chr1	37638663	37638863	+	885.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028096, intron 2 of 9)	intron (NM_028096, intron 2 of 9)	81048.0	NM_028096	72097.0	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	3.78896037926368	3.69525586407533	3.89083901725344	4.41771480858132	3.9114992338099	3.47245528506303	3.92160531799334	3.73363945286098	-0.620442611381571	0.233047173300401	0.542611378295208
Merged-chr5-123524255-4	chr5	123524153	123524353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023232)	promoter-TSS (NM_023232)	-89.0	NM_023232	66593.0	Mm.46716	NM_023232	ENSMUSG00000029433	Diablo	0610041G12Rik|1700006L01Rik|AU040403|Smac	diablo, IAP-binding mitochondrial protein	protein-coding	6.63401021682805	6.93778668176717	6.72807104421095	6.50868915658677	6.91777325287077	7.14731297050127	6.82087422416033	6.83727249130211	0.326867506771687	0.124809482084066	0.392172737029896
Merged-chr12-46857028-3	chr12	46856936	46857136	+	740.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-38261.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	3.1684101970695	3.11776470763412	3.53612616021219	3.52179541302533	3.19569837095575	3.00804824516074	3.37735436067804	2.89928717868806	-0.823439046452838	0.178257532143612	0.474041428694993
Merged-chr17-35808139-4	chr17	35808050	35808250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13563.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	6.76179373254979	6.62186907052809	6.84584662265171	6.51803709424887	6.93063184686049	6.82010597310366	6.3305849455714	7.09395970956945	0.202630656668867	0.392463065868245	0.691933206965634
Merged-chr5-110094512-4	chr5	110094396	110094596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5473.0	NM_207279	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	7.81169896590581	7.74499061126279	7.41245805038492	8.06025103500372	7.87321797645643	8.09524173269232	8.35008964764548	8.17604526989689	0.442929362726491	0.0298865065679239	0.166859491018767
Merged-chr6-145121115-4	chr6	145121023	145121223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008511)	promoter-TSS (NM_008511)	-616.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	6.02664792629075	6.26108888655171	6.70871655513271	6.28506657848209	5.5405006233848	6.13726551442842	5.9292710592631	6.14919325051648	-0.604339097213453	0.0303343782294112	0.168487764962252
Merged-chr5-130842552-4	chr5	130842434	130842634	+	912.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	393742.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	3.86319576495021	3.72332057153263	4.32189368472164	4.48032683845501	3.95216016408852	3.74310529317411	4.09502866903047	4.19821240146822	-0.36187341244079	0.458501571941412	0.741416770167154
Merged-chr2-35397730-4	chr2	35397646	35397846	+	936.2416380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080709)	promoter-TSS (NM_001080709)	-572.0	NM_001272040	74854.0	Mm.159338	NM_001080709	ENSMUSG00000079421	4930402F06Rik	-	RIKEN cDNA 4930402F06 gene	protein-coding	4.72108889251695	4.41104455990981	4.53296038111871	4.25663594726855	4.40525181399907	4.66494603676179	4.76664640169559	4.40179013023525	0.198754271128243	0.601416325551689	0.827096544712114
Merged-chr5-142819596-2	chr5	142819496	142819696	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2209.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	3.52031041617448	3.08885484539612	3.25502914984273	2.99128752388184	3.18720733404968	3.24384813594708	3.45673024828156	3.36612605221591	0.35752665522948	0.525702222540096	0.783367294725902
Merged-chr17-34204509-4	chr17	34204405	34204605	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011530)	promoter-TSS (NM_011530)	26.0	NM_011530	21355.0	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	5.4700009893528	5.62805232182587	5.01051336229845	5.37169668917876	5.65392234111509	5.50016771287222	5.57359133490853	5.25756847200676	0.207313028936996	0.488584011753914	0.761377570765248
Merged-chr18-36328834-4	chr18	36328726	36328926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19798.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	6.9347465592396	7.00965102702767	7.21250246016425	7.10902866698726	6.71015677094255	6.68884212601137	6.8349057381456	6.76595068297848	-0.45124989007919	0.0201214218378015	0.128578004070659
Merged-chr5-65937125-3	chr5	65937037	65937237	+	864.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-29987.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	3.62616838384838	3.52678767429249	3.41361774776121	3.42627810592946	3.30101329456671	3.33952011597666	3.61118212324652	3.57459306575201	-0.123679999354259	0.807574857592438	0.925791122379966
Merged-chr15-99725504-4	chr15	99725392	99725592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183256)	promoter-TSS (NM_183256)	-126.0	NM_183256	66379.0	Mm.5265	NM_183256	ENSMUSG00000023020	Cox14	2310016M24Rik|AA959804	cytochrome c oxidase assembly protein 14	protein-coding	8.12516820459933	8.29808998954825	7.96059225756944	7.84052835491823	8.24154169102443	8.24689756716105	7.90818832374686	8.13960776434814	0.102234933284034	0.575411465217264	0.813026770185778
Merged-chr7-142399493-4	chr7	142399397	142399597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11627.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	8.26281715989409	8.27794902769577	8.28688372665129	8.28362847719047	8.33135766126897	8.38306188938526	8.14879475220163	8.2982221114437	0.0196916614342164	0.895898609734975	0.960979922829742
Merged-chr5-107611807-4	chr5	107611708	107611908	+	816.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359917, intron 6 of 12)	intron (NM_001359917, intron 6 of 12)	13847.0	NM_001359916	231571.0	Mm.482420	NM_144911	ENSMUSG00000033773	Rpap2	AW060207	RNA polymerase II associated protein 2	protein-coding	3.80186815351469	4.27310038127656	4.17797206219416	4.31011698634968	4.1991338074914	4.25569790968274	4.48368554534901	4.26542949862892	0.330656195928703	0.428648581658668	0.71961368508163
Merged-chr7-97336833-4	chr7	97336745	97336945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039039, intron 1 of 1)	MTE2a|LTR|ERVL-MaLR	4522.0	NM_001039039	622320.0	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	6.56309186983895	6.69123504100461	6.12135022930368	6.72352750266633	5.88006004453589	6.04339265216789	6.04704926489239	6.07382107838529	-0.833675728148345	0.000701770186682265	0.0101516002539437
Merged-chr1-58873156-4	chr1	58873061	58873261	+	798.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_1B-I_MM-int|LTR|ERVK	70659.0	NM_001277926	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	3.78521994992177	4.04197947293652	4.30260098610537	3.72054448002414	4.00943790463298	4.07178217716881	3.9318620501349	4.26058182485441	0.269887110056736	0.549507287988062	0.798032733475074
Merged-chr12-84217159-3	chr12	84217047	84217247	+	787.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	1734.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	3.66341686010968	3.47767185362797	3.50897084606638	3.74354748950933	3.40282819965933	3.44528937685721	3.49547850774269	3.5070840364783	-0.500708165829803	0.313253121912192	0.625166179930743
Merged-chr17-6098067-4	chr17	6097951	6098151	+	664.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8779.0	NM_001103181	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	3.9653635807137	3.80837228542139	3.81710204705139	3.78910716828566	3.93647549267911	3.88277520992088	3.99426506348651	3.96355946957036	0.293770079785317	0.491949161993617	0.763262787218927
Merged-chr1-178319468-1	chr1	178319368	178319568	+	1000.0	f0_balb.idr	intron (NM_025511, intron 1 of 3)	PB1D10|SINE|Alu	315.0	NM_025511	66359.0	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	5.22090633218741	4.95523471755572	5.15804428010247	5.39352650149239	5.51636695469454	5.16016256189853	5.03172674338867	5.27882492320246	0.12257513462885	0.698899247834825	0.878535427836279
Merged-chr10-125387794-4	chr10	125387713	125387913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58850.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	5.09688115862988	5.06835882161636	5.57008795551108	5.53126909025444	4.89264611809735	5.01653568385882	5.0390326475968	5.06014041602326	-0.656165421431783	0.0410961405484937	0.205060090298019
Merged-chr17-64531337-4	chr17	64531246	64531446	+	948.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045899, intron 1 of 3)	intron (NR_045899, intron 1 of 3)	24244.0	NR_045899	100043582.0	Mm.11170	NR_045899	ENSMUSG00000073377	AU016765	-	expressed sequence AU016765	ncRNA	5.17020461671399	5.83883660879325	5.5719973672672	5.23530930623158	5.31826340842846	4.87498264086095	5.38820655763772	5.09847983023668	-0.514102745025122	0.124021371368423	0.390814467532894
Merged-chr3-88607597-4	chr3	88607504	88607704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8603.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	6.38147409136377	6.73547167280974	6.5062108034632	6.43997514761215	6.66259635879698	6.9390720357724	6.7293492663028	6.1335612183279	0.181638743264029	0.460748196027768	0.742730753154873
Merged-chr8-36613948-4	chr8	36613814	36614014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015802)	promoter-TSS (NM_015802)	29.0	NM_015802	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	6.84641525174991	6.83039514425961	6.83418020368744	7.16014980913461	6.49488869339319	6.46343501017649	6.99800148985946	6.34051661386792	-0.477806397071648	0.0435695319952122	0.212457060895198
Merged-chr1-60410079-4	chr1	60409973	60410173	+	898.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198127, intron 1 of 8)	CpG	454.0	NM_001198570	329165.0	Mm.212066	NM_198127	ENSMUSG00000026782	Abi2	8430425M24Rik|AI839867|C130078H13	abl-interactor 2	protein-coding	4.48053338556767	4.34986347373597	4.55365769054162	4.22495324940788	4.25429453567901	4.2673036759093	3.97043468455203	3.80944508115029	-0.757140375379795	0.0760270292949056	0.297838946738032
Merged-chr9-65539160-2	chr9	65539060	65539260	+	984.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40927.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	3.21182904243072	3.28880257721695	3.26871062149352	3.13649791863877	3.3788627528956	3.20062295784832	3.08119096770669	3.08991137532635	-0.0832043684326622	0.880230282086435	0.955123602336575
Merged-chr1-23915600-4	chr1	23915515	23915715	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357395, intron 1 of 10)	RSINE1|SINE|B4	-5879.0	NM_001290683	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	4.45474760568937	4.50653712271046	4.88238086902004	5.32758776501542	5.72106400356983	5.06484980007435	5.90334543199714	5.58381600497337	1.33391184402713	0.00100243897273229	0.0134703801472742
Merged-chr6-88068955-4	chr6	88068851	88069051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-15522.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	5.50298301771591	5.65572289779575	5.53229897853219	6.00521744354625	5.61656601921059	5.62162869734338	5.58553311932598	5.55615237831159	-0.20067030166326	0.475450456853226	0.752280444323918
Merged-chr4-119126076-4	chr4	119125974	119126174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 2 of 9)	intron (NM_011400, intron 2 of 9)	17329.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	6.33204245179224	6.35764107172201	5.80966756812461	6.09245661845709	6.81018424487234	6.9452263010088	6.49000460619455	6.51882226421251	0.797072774344739	0.00110318581152034	0.0145387266947244
Merged-chr2-129549940-4	chr2	129549852	129550052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13350.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	6.35495438861589	6.92021917142474	6.47545003553515	6.18741166928528	6.06448407127141	6.27695857049266	6.37573631272275	5.95607852812771	-0.499662647600733	0.0604409173331931	0.259727363852895
Merged-chr6-42353391-4	chr6	42353295	42353495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289618, intron 4 of 9)	intron (NM_001289618, intron 4 of 9)	3567.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	8.03692893517523	7.63040422835472	7.76261655039512	8.00428259663682	7.48573041116102	7.72507258504306	7.94813414986698	7.76522437003404	-0.177769801974954	0.354671348291936	0.661352611863977
Merged-chr13-117034890-4	chr13	117034804	117035004	+	635.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9388.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	4.06367229546631	4.00143382669352	3.83150915961443	3.51484083108597	4.08241683551695	3.60008756293656	3.95856070998608	3.66660004338685	-0.0293474700705876	0.952884842072934	0.983276598943455
Merged-chr8-71676639-4	chr8	71676532	71676732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190830, intron 1 of 23)	CpG	249.0	NM_010589	16453.0	Mm.249645	NM_010589	ENSMUSG00000031805	Jak3	fae|wil	Janus kinase 3	protein-coding	5.80590796867784	6.03975691953823	6.28988892983128	5.7699544512297	6.09291411453517	6.15023940456948	5.98768457629283	6.23200399256783	0.215300516468873	0.395241301378003	0.694150374158478
Merged-chr9-46009851-4	chr9	46009736	46009936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357241, intron 1 of 5)	MIR|SINE|MIR	2854.0	NM_001357241	18475.0	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	2610005M20Rik|AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	6.60059435715312	6.06352456558716	5.67438465265046	5.95286502870609	6.57992402112819	5.96802751805978	6.62340233314646	6.19721634834641	0.398541296091929	0.17924191763887	0.475504470784432
Merged-chr11-106920157-2	chr11	106920057	106920257	+	991.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025481, intron 1 of 18)	CpG	558.0	NM_025481	66313.0	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	3.38970945389491	3.60474388945437	3.27440178811713	3.27645632101949	3.32405117912042	3.25808113815951	3.37702390119837	3.44242414575957	-0.133930819465689	0.798451903024357	0.922050695005043
Merged-chr19-55383427-3	chr19	55383326	55383526	+	917.6555179999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360432, intron 4 of 7)	intron (NM_001360432, intron 4 of 7)	67369.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	3.79605753139347	3.72448889802362	4.01600674042816	4.1284919152167	3.3328468007421	3.76381345733084	3.19204271862273	3.19967210426479	-1.78495701110022	0.00152410081662851	0.018912826364505
Merged-chr5-140619554-4	chr5	140619438	140619638	+	935.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12197.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	3.97534049956564	4.5424412355804	4.35217670515123	4.2320504683105	4.07756856444999	4.25549425841539	4.06367734356128	4.26524346841403	-0.316343428369004	0.445048220482966	0.731198136541277
Merged-chr11-51858820-4	chr11	51858700	51858900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1170.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	5.18052847612793	5.00564889734404	5.73038815455925	5.32115571220652	5.1633975475077	5.25593377877716	5.08928782156887	5.36051732867315	-0.20907463460542	0.512924412968168	0.776070206416572
Merged-chr6-47813519-4	chr6	47813433	47813633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009787)	promoter-TSS (NM_009787)	-21.0	NM_009787	12304.0	Mm.2442	NM_009787	ENSMUSG00000025823	Pdia4	AI987846|Cai|ERp-72|Erp72	protein disulfide isomerase associated 4	protein-coding	8.96796286062839	9.19683504248989	9.41093544397469	9.25545664968176	8.98734272173516	9.12087044954285	9.32003486852244	9.09049130666488	-0.104389305805818	0.518869924718238	0.779745431679921
Merged-chr10-9677131-4	chr10	9677031	9677231	+	967.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1923.0	NM_177271	320825.0	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	5.10953902882149	5.035256447511	4.80084947172608	5.312910279682	4.93562649612561	4.89723236675167	4.52366051665883	4.83601232171185	-0.55654816703277	0.105730455784126	0.358132107749989
Merged-chr11-80081170-4	chr11	80081119	80081319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277106)	promoter-TSS (NM_001277106)	-228.0	NM_018776	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	7.44114264956736	7.48437449629177	7.17381585301647	7.67577719402382	7.62023461851778	7.53983165453325	7.55959428612182	7.43726815894136	0.0981660794866301	0.604142697031048	0.828384601182272
Merged-chr17-78265377-4	chr17	78265291	78265491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	65143.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	6.74344127087597	6.77047837340049	6.34471608381178	6.91360239859082	6.59155743729089	6.59841212801534	6.73840600563297	6.7540142242243	-0.076739032497236	0.729192811838866	0.892482549588669
Merged-chr2-58496786-4	chr2	58496703	58496903	+	918.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355048, intron 3 of 10)	intron (NM_001355048, intron 3 of 10)	64607.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	4.53522168438775	4.27119801371188	4.57561307786253	4.5998186749562	4.8539235376417	4.23856126453696	4.76598591805265	4.36151121021105	0.199477978512349	0.613824872384776	0.833569981513836
Merged-chr8-68822910-4	chr8	68822808	68823008	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027590, intron 16 of 16)	intron (NM_027590, intron 16 of 16)	28979.0	NM_001293792	70885.0	Mm.252421	NM_027590	ENSMUSG00000031864	Ints10	4921521J11Rik|AI462004	integrator complex subunit 10	protein-coding	4.90707668292452	5.17253557960484	5.09298550553554	5.15481667091282	5.44837351694654	5.1623744536553	5.47422567038435	5.33903764221967	0.499637472635594	0.0908525931343197	0.329365971820332
Merged-chr8-116921686-8	chr8	116921569	116921769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028131)	promoter-TSS (NM_028131)	-71.0	NM_028131	72155.0	Mm.23185	NM_028131	ENSMUSG00000031756	Cenpn	2610510J17Rik|AI426416|AW545024	centromere protein N	protein-coding	7.1316867038783	7.19711243421922	7.46559973996043	6.75719953673834	6.89755838626828	7.45126202382961	7.0137770538377	7.09278933232591	-0.0358593519713534	0.878829063215064	0.954708519232108
Merged-chr7-126704755-4	chr7	126704658	126704858	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009898)	promoter-TSS (NM_009898)	58.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	5.01716091919311	5.01280329930806	4.87918632147473	4.72511195396185	4.97113600865436	4.97866018067618	4.92665435395927	4.98132390376314	0.129224031823467	0.685346522544848	0.871330007833379
Merged-chr6-121247167-4	chr6	121247053	121247253	+	820.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011909, intron 1 of 10)	intron (NM_011909, intron 1 of 10)	1247.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	3.66943344273054	3.39132139312635	3.46677384876529	3.54952037213932	3.7091690253124	3.19599981063816	3.27909882988724	3.51874579120587	-0.233864527200703	0.66379600719912	0.860766537254306
Merged-chr6-90575595-4	chr6	90575521	90575721	+	888.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356412, intron 12 of 22)	intron (NM_001356412, intron 12 of 22)	24828.0	NM_027406	107747.0	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	3.55678269550093	3.80106452713899	3.82681093924664	3.91082264684628	3.85265810754072	3.84401474832265	3.42089912949458	3.87220320535423	-0.0743849805621775	0.87784385810103	0.954314763971155
Merged-chr1-192763086-3	chr1	192763024	192763224	+	718.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 1 of 11)	MTE2b|LTR|ERVL-MaLR	8095.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	3.70981752244703	3.69432425950265	3.83086984797602	4.1664197204697	4.36994688214904	4.11844487001012	4.20758348572532	4.59041970589796	1.13917612212862	0.0145521399112356	0.102653748588309
Merged-chr2-72366176-4	chr2	72366082	72366282	+	983.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 4 of 19)	intron (NM_023057, intron 4 of 19)	80481.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	4.78727783314018	4.61438891762922	4.86146308046134	4.89844200052743	4.98623067551806	4.84467849036647	4.72757651363599	4.96078983488291	0.176836604804052	0.592432129906953	0.822184390287336
Merged-chr2-70964956-4	chr2	70964858	70965058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001110512, exon 9 of 9)	3' UTR (NM_001110512, exon 9 of 9)	53416.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	7.37762157144398	7.28978523557748	7.42882429185618	7.53179476887579	7.59944527437592	7.38142450208225	7.72457540846897	7.77900587496801	0.285827087505218	0.118784432605594	0.381317689461668
Merged-chr15-73441182-3	chr15	73441055	73441255	+	636.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17964.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	3.43844714405711	2.82413548176381	3.22331696112856	3.24676261658611	3.12527953172078	3.21168367123596	3.42392133934037	3.27891851625903	0.228485280148795	0.698545537237411	0.87844064975986
Merged-chr15-25354928-4	chr15	25354838	25355038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58826.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	7.66208782803587	7.60864163579904	8.19610475566521	8.1728864221507	7.86854591894162	7.24280927939487	7.89935658879939	7.41455724418392	-0.391015832903492	0.0976844509663072	0.342533205346607
Merged-chr7-79466309-4	chr7	79466213	79466413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017462)	promoter-TSS (NM_017462)	-40.0	NM_017462	18975.0	Mm.3616	NM_017462	ENSMUSG00000039176	Polg	AA409516|PolgA	polymerase (DNA directed), gamma	protein-coding	8.25409860520909	8.52004101223184	8.34023676010295	8.29143471106908	8.2995869120339	8.53410041844642	8.45513009945326	8.31273004949028	0.0584984849037223	0.712604160571487	0.88495186291337
Merged-chr4-141867702-4	chr4	141867601	141867801	+	919.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	7219.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	4.79040254152127	5.17927211733313	4.65914792796493	4.46646579343321	5.33994820990899	5.29775236129419	5.19036619723706	5.684556163444	1.13847987623731	0.00098174113816013	0.0132372328988634
Merged-chr11-88291481-3	chr11	88291351	88291551	+	851.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2592.0	NM_028859	74297.0	Mm.207320	NM_028859	ENSMUSG00000034031	Ccdc182	1700106J16Rik	coiled-coil domain containing 182	protein-coding	3.88304549262849	4.00819699399054	4.47039875511636	4.2398350452825	2.92851643108232	3.11681775364677	3.22702590466247	3.07966424623953	-5.03184034540671	5.75755237495138e-08	2.60036053614635e-06
Merged-chr2-31483167-4	chr2	31483062	31483262	+	901.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_002687, intron 5 of 15)	intron (NR_002687, intron 5 of 15)	12854.0	NR_002687	432466.0	Mm.333323	NR_002687	ENSMUSG00000046687	Gm5424	EG432466	argininosuccinate synthase pseudogene	pseudo	4.10121602999827	4.09497846443614	3.72594208007241	4.1528859070596	4.3557931186952	4.02193060895898	4.25626891052418	4.09935269839312	0.403374008735348	0.346284146372637	0.65459351955967
Merged-chr4-95557451-4	chr4	95557352	95557552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113412)	promoter-TSS (NM_001113412)	-55.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	5.93266336244897	5.93792527842434	5.78055571556296	6.35092278753497	8.01757519106714	7.89313364838715	8.31369749601932	7.93546268995528	2.73433632431611	8.04692379178843e-29	8.67836346326831e-26
Merged-chr6-86004453-4	chr6	86004314	86004514	+	780.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155305)	promoter-TSS (NR_155305)	61.0	NR_155305	75355.0	Mm.142685	NR_155305	ENSMUSG00000106791	4930553P18Rik	-	RIKEN cDNA 4930553P18 gene	ncRNA	3.58898822537623	3.61943941847764	3.64821611530334	3.8198315657484	3.90730797335425	3.82330487260046	4.02324472583686	4.03918945510193	0.759367793753193	0.0946198126275519	0.336545254997827
Merged-chr12-99986963-1	chr12	99986863	99987063	+	811.0	f0_balb.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	22464.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	3.77039883194868	3.44632396803873	3.4940467752578	3.29551555909134	3.18718336443956	3.31892921985134	3.06160709755699	3.32705729682484	-1.01332663530466	0.0700244562225333	0.283229387968161
Merged-chr8-95419334-3	chr8	95419256	95419456	+	926.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008187)	TTS (NM_008187)	15513.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	3.96066033826885	3.50214272340359	3.52577309476393	4.0606985008667	3.64391377674246	3.45424046848695	3.39366956914748	3.52393905511856	-0.892880786284471	0.091020326188906	0.329689032064689
Merged-chr4-10919273-4	chr4	10919190	10919390	+	724.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44792.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	3.75093458768801	3.70275714931914	3.58238599066533	3.82338220457408	3.72151292060165	3.75915867968524	3.97375289903393	4.07369345993677	0.463393471812001	0.312897837166314	0.624821297563783
Merged-chr2-84716156-1	chr2	84716056	84716256	+	873.0	f0_balb.idr	promoter-TSS (NM_144887)	promoter-TSS (NM_144887)	-992.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	4.43134940758243	4.62935344249939	4.4761457767942	4.3815230548441	4.45167677213286	4.8471482354062	4.53901073724204	4.77984105083989	0.39465861782601	0.27663607952075	0.588621934327307
Merged-chr6-97396778-4	chr6	97396674	97396874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	62512.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	6.79582935812379	6.84407732932999	6.99598535993278	6.99150168792935	6.65100875808164	7.00212541166872	7.08826747567473	6.82060421994293	-0.0299682640490231	0.884864103093134	0.956749878708418
Merged-chr15-100038662-4	chr15	100038576	100038776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159361)	promoter-TSS (NM_001159361)	12.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	6.43544357235317	6.67092208508038	6.48873587541477	6.40376978679776	6.46747752061878	6.9104975110157	6.55333395949003	6.58227564400885	0.190776121367612	0.38838169457847	0.688981838974675
Merged-chr19-10240181-3	chr19	10240037	10240237	+	908.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033481, intron 1 of 25)	intron (NM_001033481, intron 1 of 25)	611.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	3.8499848375435	3.92435912014796	3.80259770699531	3.58464566857315	3.70302299633469	3.45201077947752	3.78645433489793	3.69880739139153	-0.360189397711487	0.452953215410322	0.737167480329507
Merged-chr4-150371863-4	chr4	150371766	150371966	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	CpG	89950.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	6.04301418271139	6.44723894910287	5.8361919357427	6.2909688392436	5.92638741668684	5.50467667614212	6.19058769810774	6.21807737886469	-0.298732309093427	0.293036941395802	0.60553679205796
Merged-chr5-130456704-3	chr5	130456614	130456814	+	832.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021371, intron 1 of 5)	intron (NM_021371, intron 1 of 5)	7922.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	3.47825406784371	3.78353968187337	3.75911541162193	4.03588432363153	3.68205928791681	3.59345468920054	3.83952652405734	3.70559617665196	-0.260251149604442	0.594744843630365	0.823592944122747
Merged-chr2-166045221-4	chr2	166045112	166045312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 2 of 22)	intron (NM_008679, intron 2 of 22)	52575.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	6.57494847260207	6.95462477629204	6.654283594008	6.81091661184865	6.40516667373724	6.46571717046867	6.44230545549208	6.72307852596114	-0.364062644324946	0.0940078772875474	0.335413029473367
Merged-chr9-37230824-3	chr9	37230730	37230930	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_020258, exon 18 of 18)	3' UTR (NM_020258, exon 18 of 18)	22514.0	NM_001310096	66279.0	Mm.41451	NM_025464	ENSMUSG00000032121	Tmem218	1810021J13Rik|AV004931	transmembrane protein 218	protein-coding	5.01753689646948	4.03092199033153	5.04539767175368	5.35899293496339	3.92891518057298	3.78410944384563	3.91045919956887	3.79424232427089	-2.69509010977869	1.86249445609923e-07	7.56249246381558e-06
Merged-chr14-66867537-2	chr14	66867437	66867637	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 1 of 13)	CpG	1063.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	2.64536184548851	2.59924987360161	2.70334199835944	2.46945095502383	2.32337183654708	2.33408072263715	2.51337714234099	2.38441453527849	-1.23787578873322	0.0912383510663357	0.330096835052863
Merged-chr15-59041219-4	chr15	59041109	59041309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	40817.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	5.92379102614275	5.91883231484653	5.42543175825674	5.82401863527598	6.00026172591543	5.78206442714348	5.95771364886732	5.6288671785798	0.104964974977029	0.696465752174821	0.877228600292293
Merged-chr7-80781729-3	chr7	80781671	80781871	+	776.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	21560.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	2.95181221293735	3.05137766005073	3.1774689256172	2.80595744296311	2.92954970178294	2.93051385655047	2.67339747155865	3.06808241467662	-0.384866048053992	0.540601970190763	0.792829019929487
Merged-chr5-121392927-2	chr5	121392827	121393027	+	981.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5055.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	2.6709596840435	3.05388171995206	2.67119371610431	2.55845437265975	3.14629695962746	2.99817726734269	3.05993484378352	3.42145232146257	1.80036032095234	0.00558895789405796	0.0515612641443267
Merged-chr1-125428636-4	chr1	125428517	125428717	+	857.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205386, intron 2 of 12)	intron (NM_001205386, intron 2 of 12)	7110.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	3.62779497580314	4.01780217316769	3.68706466334787	3.84757503554834	4.03416132780371	4.20525080213749	3.88258319593151	3.6264160312024	0.406827780566429	0.387304842684024	0.688149856404137
Merged-chr10-57712832-4	chr10	57712712	57712912	+	959.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	61831.0	NM_001190402	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	4.467923844265	4.05232436920642	4.39223747879617	4.39946202671097	4.40734149988645	3.86019364393538	4.15989788302844	4.02758265779377	-0.482506001751524	0.264666272397489	0.576566406596513
Merged-chr4-151861170-6	chr4	151861059	151861259	+	946.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 1 of 23)	CpG	609.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	4.66226886455304	4.19356117602346	4.17022121129598	4.45591387228023	4.6398619153874	4.59332109835644	4.64075889295429	4.9854182577906	0.73359447975196	0.0537165663793396	0.24193188296096
Merged-chr2-103504932-2	chr2	103504832	103505032	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19779.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	3.82364486087351	3.53605496920033	3.87086312765233	3.87301154688359	3.36249353217397	3.49028208161539	3.48946260827347	4.03900884182693	-0.500377678381031	0.338153860701688	0.647796331490298
Merged-chr11-5065777-4	chr11	5065664	5065864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190406)	promoter-TSS (NM_001190406)	-437.0	NM_001190406	78926.0	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	5.48009564455263	5.61893852518522	5.48104484851385	5.48068040740959	5.59461066379049	5.08131180631879	5.60786853116861	5.30013836264039	-0.155691802706357	0.591521277437631	0.821651601325705
Merged-chr19-47133284-4	chr19	47133183	47133383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133746, intron 2 of 2)	intron (NM_133746, intron 2 of 2)	5011.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	6.43736714748738	6.40290677127871	6.77300598722549	6.50402782189443	6.07170771814885	5.95485973058439	6.0858144236497	6.29287333987889	-0.642175310996749	0.00565560403322084	0.0520486164546796
Merged-chr2-30442695-3	chr2	30442607	30442807	+	903.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138748, intron 8 of 9)	intron (NM_138748, intron 8 of 9)	26657.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	4.21177592515338	3.9957481845669	3.8342894938388	3.86692049326232	4.0489166807941	3.89868891941879	4.27124927071603	3.88588804351409	0.160584427322774	0.713264663680003	0.885280331946177
Merged-chr7-31111780-4	chr7	31111681	31111881	+	880.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276269)	promoter-TSS (NM_001276269)	-784.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	3.94022521113798	3.9676705420172	4.1367961964309	3.81497589360021	4.12047911049596	4.39377207903483	4.2052767014666	4.08801096573826	0.642932695066827	0.120092259601632	0.383662362594824
Merged-chr2-157597371-4	chr2	157597275	157597475	+	752.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-31014.0	NM_016916	53619.0	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	3.53993948505126	3.53352967945277	3.97023451633533	3.75722619685029	3.94545832045569	3.94651329335699	4.23426384897888	3.71635351920822	0.735318091916745	0.120429841953491	0.38416970755851
Merged-chr1-58714580-3	chr1	58714431	58714631	+	867.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_149256)	TTS (NR_149256)	1245.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	3.85677039854046	4.06150748633999	3.6533534144826	3.65103327968024	3.65329324643538	3.77146956518577	3.52527778544602	3.7053786713873	-0.443842477374919	0.35445236696277	0.66113010749381
Merged-chr4-145267900-4	chr4	145267796	145267996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21026.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	6.88919707362701	7.10325161662408	7.31279722246927	6.44938469606017	6.88437051020889	7.16832362668815	6.62465384467344	6.30938570718419	-0.256726874923466	0.35602631083519	0.662698660537082
Merged-chr2-73041948-4	chr2	73041853	73042053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61507.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	5.66614050229795	5.57818930180128	5.44704709030303	5.74836330638941	5.81963695084407	5.78993320155525	5.58731328310376	5.47291521731509	0.0924357934575314	0.732030795990075	0.893881045577835
Merged-chr5-138227525-4	chr5	138227423	138227623	+	989.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013773, intron 1 of 5)	URR1B|DNA|hAT-Charlie	1619.0	NM_001013773	381680.0	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	6.6052501832348	6.6926107439859	6.86225845765925	6.52701996157244	5.81002224563688	5.77963198315594	5.32957265531888	5.76691925325403	-1.51061707418789	2.94014280850342e-09	1.73385604777519e-07
Merged-chr7-140941501-4	chr7	140941409	140941609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153832, exon 1 of 12)	non-coding (NR_153832, exon 1 of 12)	118.0	NM_145387	212974.0	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	6.79504674669649	7.21088287002838	7.12739978832219	6.89912293326929	7.25632904230763	7.22023626010894	7.41656169772935	7.25479329489281	0.37426735660031	0.0552797551729444	0.24584552911309
Merged-chr2-34372159-4	chr2	34372075	34372275	+	928.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016768)	promoter-TSS (NM_016768)	-130.0	NM_016768	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	4.29252948784797	4.24375283917419	3.82515015893882	4.04173619452596	4.0406713640842	4.05421893129018	4.01605423092424	4.03067418462161	-0.199216994235971	0.638658343996889	0.84731839493744
Merged-chr1-52170253-4	chr1	52170160	52170360	+	766.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081081, intron 14 of 17)	B3A|SINE|B2	50638.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	4.14007668737566	4.26012489870617	4.46130097743794	4.17196346587141	3.80443631214646	4.21989886074694	4.07636628306859	3.57970831628394	-0.854879894812553	0.0613227046580046	0.262005688734463
Merged-chr19-44591294-4	chr19	44591197	44591397	+	973.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28443.0	NM_176958	319594.0	Mm.145278	NM_176958	ENSMUSG00000036450	Hif1an	2310046M24Rik|A830014H24Rik|FIH|FIH1	hypoxia-inducible factor 1, alpha subunit inhibitor	protein-coding	5.14676908519535	5.03033210094368	5.43907144383531	5.61799470480438	5.2394980346306	5.07357116830153	4.79058149013647	5.207972567108	-0.460426519821566	0.166693368738771	0.458039966547908
Merged-chr1-131021142-4	chr1	131021022	131021222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010548, intron 2 of 4)	intron (NM_010548, intron 2 of 4)	1277.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	5.8580206277697	5.26607069390368	5.4071987568499	5.56862831486054	5.67761453754381	5.3562576846325	5.76458666420388	5.4908173677953	0.07769249843388	0.790284840771921	0.918828686312538
Merged-chr13-60759227-2	chr13	60759144	60759344	+	636.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 25 of 26)	intron (NM_134062, intron 25 of 26)	27120.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	2.53820193017996	2.44218848121694	2.53856520302108	2.06935322496313	2.21280401211089	2.29849381786081	2.46701306314627	2.34205966938863	-0.44076703519003	0.574641293714564	0.812490418444022
Merged-chr2-31715908-4	chr2	31715786	31715986	+	964.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283047, intron 2 of 11)	intron (NM_001283047, intron 2 of 11)	27349.0	NM_001283046	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	5.29423926527283	5.96173287708717	6.2641345719257	6.12293511306451	5.38347819251093	4.71061931088905	5.20143852857894	5.18854070069966	-1.39008948551409	7.45262465166097e-05	0.00158158656000041
Merged-chr6-5292942-3	chr6	5292845	5293045	+	771.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183308, intron 1 of 8)	intron (NM_183308, intron 1 of 8)	5428.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	3.63872716252686	3.94877956106369	3.95696292264286	3.51661661218807	3.42057330587568	3.33120356283752	3.34045156928218	3.35029417873723	-1.36964028961447	0.0103727312190938	0.0810743527055575
Merged-chr7-55852575-4	chr7	55852483	55852683	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 1 of 30)	MTD|LTR|ERVL-MaLR	10512.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	4.90416771635747	5.16939016123013	5.10417208076369	4.4560852707708	4.84091924820982	4.889261736358	5.22242159906353	4.74943085782391	0.0260414475593254	0.943963895191295	0.979871808316036
Merged-chr8-83657012-4	chr8	83656935	83657135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018771, intron 1 of 6)	L2|LINE|L2	4357.0	NM_018771	67903.0	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	5.32347744395294	5.10555093864072	5.353078945128	5.03028190258078	5.16947760916666	5.37695332073877	5.07832430937712	5.48351022229977	0.158783797204044	0.602687540435596	0.827797662188335
Merged-chr8-68926695-4	chr8	68926562	68926762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46107.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	5.9251531149612	6.05938813585225	5.73866921555103	5.30886613225593	5.92436952343287	5.81045136315992	6.05801574228998	5.65651572149048	0.162682711672279	0.580910186327785	0.816043625532665
Merged-chr7-101348015-4	chr7	101347906	101348106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040111)	promoter-TSS (NM_001040111)	-63.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	6.25029774377213	5.75096694620184	5.7064715816437	5.63465235782692	5.64013753547032	5.60330474066379	5.51705320150725	5.75198710074667	-0.356606861650545	0.207252962298359	0.511181071672855
Merged-chr8-26066613-4	chr8	26066547	26066747	+	742.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207659, intron 13 of 21)	intron (NM_207659, intron 13 of 21)	-15962.0	NR_110583	76604.0	Mm.437190	NR_110583	ENSMUSG00000085437	1700047A11Rik	4930554C15Rik	RIKEN cDNA 1700047A11 gene	ncRNA	3.81575642436356	3.87724968290409	3.9601516154706	3.72486826456886	3.83950120050098	3.93652132756015	3.52209034325277	3.86378793428658	-0.115877521002355	0.80076460517521	0.923158042042148
Merged-chr5-31048404-7	chr5	31048312	31048512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177870)	promoter-TSS (NM_177870)	150.0	NM_001177621	330064.0	Mm.205463	NM_177870	ENSMUSG00000006641	Slc5a6	E430023I20	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	protein-coding	6.57034278998932	6.79651536081523	7.07615825126014	6.52661740990538	6.39821962111515	6.91568858680321	6.30631663126893	6.73484103739596	-0.212135405182906	0.394768018979909	0.693738712793082
Merged-chr6-113642956-4	chr6	113642890	113643090	+	971.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 1 of 11)	intron (NM_001113553, intron 1 of 11)	4523.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	5.12726644071561	5.94515253068291	4.79737534521726	4.0324313871002	5.45709817527621	5.69037468167188	4.73200624956039	4.35631125039173	-0.0311613509464859	0.970967619136023	0.989555055159975
Merged-chr6-86694690-3	chr6	86694600	86694800	+	814.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011818, intron 13 of 13)	intron (NM_011818, intron 13 of 13)	-10209.0	NM_025665	66618.0	Mm.182650	NM_025665	ENSMUSG00000001158	Snrnp27	2610209M04Rik|AI449063|AU022368|Ry1	small nuclear ribonucleoprotein 27 (U4/U6.U5)	protein-coding	3.31115657030387	3.18967612754191	3.08183015181512	3.27034623425296	3.23164588547417	3.19022514796231	3.13228556210397	3.14168802225413	-0.165132820390858	0.761923300637643	0.906738536658587
Merged-chr8-34895244-3	chr8	34895151	34895351	+	861.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 3 of 26)	intron (NM_175091, intron 3 of 26)	70439.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	3.55369705658428	3.63121690675505	3.77375454715657	4.14458348174871	4.00487131049224	3.78600787296793	3.59919582988427	3.55236960500093	-0.166381245219856	0.747422711990391	0.900560236507876
Merged-chr10-94344735-3	chr10	94344586	94344786	+	929.1222529999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	32737.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	3.55331163052012	3.20583877671671	3.04023733912228	2.93821889251874	3.5475144591773	3.82841812204682	4.01661835648139	3.38106389841264	1.74010424524591	0.00244974956907466	0.0273265514146944
Merged-chr4-16086733-4	chr4	16086612	16086812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72824.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	6.18406417509088	6.15326208819085	6.12229836478909	6.28296540144673	6.54358582755885	6.58440060236155	6.3064870470638	6.45498785987131	0.421526045849017	0.0551655663153121	0.245537133864282
Merged-chr8-88362162-4	chr8	88362051	88362251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012047)	promoter-TSS (NM_012047)	40.0	NM_012047	26992.0	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding	6.38394730871051	6.57022315672884	6.90717880423047	6.47281032161315	6.86478024433371	6.67165249467444	6.80798926176896	6.82460867561154	0.296135650748111	0.172441047131393	0.465866371646313
Merged-chr1-150099987-4	chr1	150099883	150100083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015466)	promoter-TSS (NR_015466)	-48.0	NM_011198	19225.0	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	5.28940854663473	5.24458495563501	5.38422247147286	5.62854326645049	5.7332046625135	5.72686734969404	5.47199668328133	5.49571908833358	0.346715733305323	0.226193006965041	0.534714293609392
Merged-chr12-84855299-4	chr12	84855213	84855413	+	938.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 2 of 34)	intron (NM_013589, intron 2 of 34)	-20489.0	NR_028577	100303738.0	Mm.479389	NR_028577	ENSMUSG00000092130	D030025P21Rik	-	RIKEN cDNA D030025P21 gene	ncRNA	5.80702652945646	5.48371335365965	6.7152731793212	6.09909221228923	4.84634952188836	5.06132932405523	5.70711397777364	5.2684321111124	-1.41979126908623	0.000173985371160861	0.00324021578593901
Merged-chr2-129315069-4	chr2	129314964	129315164	+	911.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5092.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	4.40895106739891	4.40821872517342	4.32004700113499	4.52427307006636	4.90550519502652	4.40063389853161	4.20613943596035	4.44936346692569	0.2486552647934	0.53397037614213	0.789042708189764
Merged-chr9-124023209-3	chr9	124023099	124023299	+	873.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009914, intron 1 of 1)	intron (NM_009914, intron 1 of 1)	1228.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	3.88919984498398	4.41298177472548	3.88983080225863	4.05788570856186	3.19775079790271	3.22416509207205	3.31902075351349	3.10528449824122	-3.19173183089809	3.9469811524864e-07	1.49516855483145e-05
Merged-chr6-97402723-4	chr6	97402643	97402843	+	882.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	56543.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.07480249220991	4.16213319653443	4.42456063429385	4.47874632905612	4.12294589873078	4.24943993730487	4.00795706682791	4.16952641177577	-0.424456325626954	0.301428513518372	0.613453913648291
Merged-chr7-140955976-4	chr7	140955852	140956052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030694)	promoter-TSS (NM_030694)	9.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	5.66870053495783	5.86228263513948	5.69521532425115	5.46106850522954	5.7369543406902	5.56038843667045	6.01458866934564	5.63966145561845	0.138410209041122	0.613294611068958	0.833244839115811
Merged-chr10-119062203-4	chr10	119062114	119062314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11715.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	5.8408828252742	5.84094743213731	6.38342000414015	6.29092128246491	6.1909247701005	5.83324824009332	6.23177489759157	5.95708891301624	-0.0792813384347653	0.767518967012404	0.909027746453384
Merged-chr10-59230472-2	chr10	59230372	59230572	+	836.083313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8550.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	3.25272593462399	4.09211667127746	3.18149735518493	2.97500449466552	3.68797821580348	4.11620911528363	3.43493484598709	3.5058985070245	0.753593993928214	0.241932552478502	0.552488599341246
Merged-chr2-129562577-3	chr2	129562472	129562672	+	922.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25970.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	3.01417000766296	2.99435886524815	3.01450633708383	2.35634745271111	3.80612779699337	3.697763246657	4.17596442840496	4.50995304263496	5.60283423450561	3.58239826500843e-11	2.94447489728678e-09
Merged-chr7-120843557-1	chr7	120843457	120843657	+	696.0	f0_balb.idr	promoter-TSS (NM_001267710)	promoter-TSS (NM_001267710)	-43.0	NM_001267710	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	3.97955070833813	3.38724208492356	4.02395939593576	3.74179667983989	3.41418468677694	4.0109673983444	3.72019303119679	3.93235689019146	-0.0497956832161637	0.923835616256782	0.971863340184091
Merged-chr11-100611847-4	chr11	100611784	100611984	+	890.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019795, intron 1 of 13)	intron (NM_019795, intron 1 of 13)	8284.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	4.49839657017437	4.30822806513336	4.49911256336178	4.57315663499744	4.37595646340514	4.45423850782703	4.76416952968522	4.22685603068684	-0.0237417806673735	0.950467996093307	0.982264362614525
Merged-chr8-126527473-3	chr8	126527369	126527569	+	940.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52404.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	4.29216780300317	4.22146677482151	4.45139520422123	4.70531679779332	4.15920153458594	3.70158298403438	3.94115482153788	4.05962940556763	-1.16015490407449	0.00943372480504375	0.0757197900200957
Merged-chr7-75655904-4	chr7	75655818	75656018	+	899.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	L1M4|LINE|L1	-192420.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	4.54524665776991	4.48668995777208	3.88205869951322	3.99489041537034	3.93599969503328	4.22128977765078	3.86698713644729	4.3970681552279	-0.338286730854125	0.468350486856921	0.747675629808035
Merged-chr14-75168694-4	chr14	75168620	75168820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	MLTR11B|LTR|ERVK	32295.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	5.8274199130128	5.48534183821639	5.73114985638201	6.27856321228117	5.69838079304452	5.65951670161307	6.17704457106945	5.47676661699098	-0.16408518533341	0.603992301486819	0.828350269166784
Merged-chr11-78262791-3	chr11	78262688	78262888	+	847.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001002004, exon 2 of 39)	exon (NM_001002004, exon 2 of 39)	1034.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	3.90237125374532	3.7396504250419	3.42822335790498	3.40099378792794	3.81866816935708	3.60681391868031	3.59236359143044	3.85572127541521	0.311674115551067	0.531887994631659	0.787748963171131
Merged-chr2-90395166-4	chr2	90395066	90395266	+	926.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F3|LINE|L1	-5474.0	NM_146263	258330.0	Mm.330392	NM_146263	ENSMUSG00000082980	Olfr1274-ps	GA_x5J8B7W2BV0-3116-4045|MOR228-4|MOR228-5|Olfr1274	olfactory receptor 1274, pseudogene	protein-coding	5.37650155744425	5.61099585805803	6.0171272090973	5.93604134951943	5.4664757886268	5.92518221970469	5.59044188901207	6.28221596959642	0.135992383871794	0.668701625152507	0.863196405156422
Merged-chr7-126396873-4	chr7	126396764	126396964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010900)	promoter-TSS (NM_010900)	-127.0	NM_010900	18020.0	Mm.1389	NM_010900	ENSMUSG00000030722	Nfatc2ip	D7Ertd304e|NIP45	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2 interacting protein	protein-coding	8.7110167864974	8.93565035207288	8.36600645954117	8.55836877170401	8.56993840247131	8.76678130489111	8.41259031069199	8.46677403993988	-0.124708237336603	0.491514452119705	0.763059329264072
Merged-chr2-157399823-3	chr2	157399727	157399927	+	808.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24466.0	NM_009271	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	3.2426071356595	3.15320647595182	3.13988347731755	3.02937159466465	2.72149100507634	2.72291049690759	2.82932266160726	2.90288057737508	-1.60029110189533	0.0125414283012475	0.0926407560247508
Merged-chr2-17936699-3	chr2	17936598	17936798	+	782.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60260.0	NM_026627	68231.0	Mm.23887	NM_026627	ENSMUSG00000062651	H2al2a	1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1	H2A histone family member L2A	protein-coding	3.83011028368373	4.01355672641994	3.83064133616422	4.48003835907846	4.01893868044642	3.78081671067454	3.58910278350609	3.77491107149286	-0.769284585307087	0.12429889679811	0.391259263361566
Merged-chr8-95434957-4	chr8	95434845	95435045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008187)	promoter-TSS (NM_008187)	-76.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	8.78734604273537	8.98366508562481	8.56557736017496	8.62273719825457	8.89601958695847	9.14566989914635	8.97925599232035	8.65867879493021	0.226115806225417	0.19830874500762	0.499800779736617
Merged-chr9-75541704-3	chr9	75541583	75541783	+	833.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	17974.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	3.52510472703772	3.50937665960203	3.8046734788768	3.42207411993912	3.4855514198819	4.20229117982116	3.73737775483965	4.11289863162887	1.01409104547431	0.0458008900588684	0.219517982189764
Merged-chr2-168230538-4	chr2	168230508	168230708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310084)	promoter-TSS (NM_001310084)	-14.0	NM_001160330	69372.0	Mm.482182	NM_001160330	ENSMUSG00000074576	Mocs3	1700020H17Rik|Uba4	molybdenum cofactor synthesis 3	protein-coding	6.27528489829281	6.32609311130296	5.87253245909731	6.1236409077381	6.47633563808812	6.6473740474875	6.40556078557533	6.78511545222048	0.626163865941663	0.00738986414608586	0.0633434413088009
Merged-chr6-88033707-4	chr6	88033605	88033805	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	11312.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	5.21980272622501	5.11920900920365	4.94444442738682	5.36355327967269	5.26174830374295	5.23054991594035	5.34029409170367	5.21710073596423	0.138432739185338	0.645570597169365	0.850934142345746
Merged-chr5-66015189-4	chr5	66015097	66015297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10912.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	5.80105206610228	5.65894552012975	5.72727464202417	5.86715711430086	6.03194602573856	5.85134085536871	6.14439055826388	5.67085347000722	0.272964597312173	0.288748237823186	0.600742135877454
Merged-chr10-17485100-1	chr10	17485000	17485200	+	700.666687	f0_balb.idr	Intergenic	Intergenic	-238128.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	3.46806933067779	3.19108170270698	3.5188428753511	3.6086360055767	2.97724715704645	3.22808390750138	3.40235142485433	3.24338848338106	-0.898991222441946	0.113429670797881	0.37240800972418
Merged-chr6-124859960-4	chr6	124859842	124860042	+	959.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013533, intron 3 of 4)	intron (NM_013533, intron 3 of 4)	-2255.0	NM_013534	14789.0	Mm.35708	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	4.48435670002521	4.51290299869449	4.56825723363342	4.58186076775569	4.62155189315208	4.61546935291473	4.54729249580835	4.71667899249639	0.187180468958278	0.588556109979425	0.819781378215106
Merged-chr9-41081089-4	chr9	41080966	41081166	+	907.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	-1560.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	4.04305249953274	4.3503962728882	4.36467678844264	4.33160456878207	4.43717960360777	4.05775429383714	4.02727690085567	4.32073246036037	-0.122676804323477	0.765578739370419	0.908309649125696
Merged-chr12-76403806-1	chr12	76403706	76403906	+	1000.0	f0_c57.idr	promoter-TSS (NM_008301)	promoter-TSS (NM_008301)	-370.0	NM_001002012	15512.0	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	6.9196482814853	6.81546917501697	7.35110429458374	6.72575067108988	6.78064551862112	7.19839328404928	6.93718148837502	6.8343895789144	-0.0321105769378587	0.888949941543599	0.958420116257639
Merged-chr19-29647757-4	chr19	29647679	29647879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362131, intron 1 of 14)	intron (NM_001362131, intron 1 of 14)	636.0	NM_001081213	226090.0	Mm.267131	NM_001081213	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|b2b2633Clo|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	4.9410029902533	5.37241850107134	5.49801637710758	5.24605573532227	4.93300376340169	5.12004518701713	5.44504531348558	5.11868443113209	-0.218454122453511	0.496413044671422	0.766385079853967
Merged-chr5-112950394-4	chr5	112950253	112950453	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 9 of 20)	intron (NM_001285806, intron 9 of 20)	-53991.0	NM_028901	74376.0	Mm.441903	NM_028901	ENSMUSG00000072720	Myo18b	4932408L24Rik|4933411E19Rik|Gm448	myosin XVIIIb	protein-coding	4.93991404016661	4.95210762539055	5.04069051009136	5.14272963025159	4.78626722210014	4.76243428177702	4.65042395362731	5.06882907400517	-0.410684443962632	0.210823872336265	0.515470506828542
Merged-chr18-4302513-2	chr18	4302413	4302613	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50440.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	4.85082383336225	4.46354966595018	4.91970559710318	4.7066759717258	4.54238347955661	4.52627119250032	5.04980717528271	4.94899670524135	0.0899822558862761	0.806607420409386	0.92545113102243
Merged-chr15-3958183-2	chr15	3958083	3958283	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21390.0	NM_134099	106052.0	Mm.234191	NM_134099	ENSMUSG00000022184	Fbxo4	1700096C12Rik|AI851261|AW494535|Fbx4	F-box protein 4	protein-coding	3.12735225852211	3.18745068107739	2.99486870371919	3.36332533191116	3.41238680501704	3.35975064800006	3.34519935352237	3.24671729372453	0.563184252186926	0.310932222003059	0.623003793544621
Merged-chr18-34863522-16	chr18	34863401	34863601	+	971.6145630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007913, exon 2 of 2)	exon (NM_007913, exon 2 of 2)	2294.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	5.52668241895816	6.58819071379963	4.63264195924568	4.18444010312493	6.27053412607758	6.80138345769041	4.94503016525129	5.00890404568302	0.620214302256919	0.550547264022081	0.798665130029057
Merged-chr11-85843334-6	chr11	85843271	85843471	+	928.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10756.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	4.76764721999107	4.74629837831631	4.83998853885891	4.74776256238259	4.48947187323174	4.74501125865097	4.74582717451639	4.76526854061554	-0.19354578609374	0.567288527387406	0.808227183565015
Merged-chr11-20333183-3	chr11	20333103	20333303	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018861)	promoter-TSS (NM_018861)	-490.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	5.57024076181329	5.62735708407491	5.98839156924813	5.8774458311024	5.42634148473928	5.66251413131959	5.48746078014552	5.64709159388147	-0.386803537987585	0.15458330457957	0.439841902649073
Merged-chr11-116615941-5	chr11	116615935	116616135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	8217.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	5.89907456802687	6.70214604780739	6.39936524871885	5.9091965082041	6.23799657068679	6.83630331083933	6.24062580206453	6.16964801640717	0.191286528298939	0.520989511690686	0.78111362380667
Merged-chr4-101356759-4	chr4	101356650	101356850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040708)	promoter-TSS (NR_040708)	-502.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	5.49027883845882	5.52884165991529	5.60370698949013	5.53510681400713	6.10739891107889	5.63870105883193	5.57547614025766	5.90826806951059	0.498062899986966	0.067552281942113	0.27743949433718
Merged-chr1-131085436-4	chr1	131085336	131085536	+	804.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	L2a|LINE|L2	12407.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	3.10638281088745	3.55090504329477	3.57702001119004	2.61307819306518	3.26186251163252	3.3581603622763	3.40499853374422	3.75829625579755	0.596766543390123	0.377984793412022	0.680636285273186
Merged-chr2-102948709-4	chr2	102948611	102948811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47046.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	7.00367431549063	7.41749167541348	6.83426062762273	7.01086215242617	6.67301026092022	6.87856617420515	6.63525946637033	6.97517621256939	-0.408822584894772	0.0645538565598793	0.270044689525581
Merged-chr15-85811358-1	chr15	85811258	85811458	+	1000.0	f1_balb.idr	intron (NM_197998, intron 1 of 4)	CpG	339.0	NM_001164626	72355.0	Mm.33706	NM_197998	ENSMUSG00000064284	Cdpf1	2210021J22Rik	cysteine rich, DPF motif domain containing 1	protein-coding	5.7881761038144	5.7144546307719	5.99651973832981	6.19309494567641	5.99728319417535	5.93985389453484	6.0075085163088	5.83405148419295	-0.0104188954642618	0.96789918657559	0.988636113441207
Merged-chr7-28825165-4	chr7	28825039	28825239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016772)	promoter-TSS (NM_016772)	-199.0	NM_016772	51798.0	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	7.03106971402916	6.65730939914506	6.91045770148276	7.07984757698926	6.46404618535871	6.76884117283414	6.68285634470959	6.65112175072321	-0.421826030441017	0.0483583621371012	0.227006519722794
Merged-chr5-117414091-4	chr5	117413857	117414057	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001312914)	promoter-TSS (NM_001312914)	-45.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	4.16297809947105	3.59238381662741	3.93797329390571	3.56178628683807	4.049030547944	3.95754648191927	4.14415099759501	3.98397069892874	0.59247191629756	0.20271784535519	0.505275565576953
Merged-chr13-20127705-4	chr13	20127589	20127789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	37182.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	6.71062406520327	7.30422460981228	6.75632528238771	6.76651711962105	6.89361017135322	6.76233845796259	6.69256350256126	6.61302793425476	-0.224931576280725	0.327806102983162	0.639171090552293
Merged-chr13-59975423-3	chr13	59975283	59975483	+	910.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54328.0	NR_046142	328263.0	Mm.123405	NR_046142	ENSMUSG00000114531	A530065N20Rik	A530065N20	RIKEN cDNA A530046M15 gene	ncRNA	3.3061377014658	3.37154579570143	3.03216390499646	3.20667940226696	2.82302445242898	2.86792967664806	2.89474437956466	2.90238242789819	-1.61475005081671	0.00941555368235106	0.0756165740218962
Merged-chr1-107503489-3	chr1	107503401	107503601	+	870.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-7922.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	3.58282455267166	3.77139286595136	3.39759133777765	3.52507486702532	3.96076559831651	3.86569018416326	3.82755691553839	3.79392320041983	0.873807331139452	0.0593052346439315	0.256660582458056
Merged-chr10-94360890-4	chr10	94360788	94360988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	L1M4|LINE|L1	48939.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.32788452606965	5.89627558059136	5.47245926979238	5.27168578478984	5.58639460373975	5.31018792508664	5.33210408139868	4.8098688271962	-0.377667605819859	0.268395260703598	0.580107684368438
Merged-chr18-52600701-4	chr18	52600608	52600808	+	794.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15207.0	NM_025749	66758.0	Mm.251599	NM_025749	ENSMUSG00000046886	Zfp474	4933409D10Rik|Znf474	zinc finger protein 474	protein-coding	3.06045359016011	3.43606943739032	3.25856856318625	3.19804588431381	3.24611002763338	3.49086285331096	3.51858589367818	3.58028907761006	0.756924557520922	0.156400674419296	0.442290171016728
Merged-chr2-112232826-4	chr2	112232719	112232919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7022.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	8.00798746777343	7.76082871059113	8.03605999528962	8.28181839451775	8.11820306006697	7.88238021997637	8.12313396776842	8.07615457877518	0.0165023212427449	0.927722717110412	0.973615800862715
Merged-chr10-105273327-4	chr10	105273195	105273395	+	952.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177368, intron 8 of 11)	intron (NM_177368, intron 8 of 11)	301184.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	4.56787682248819	4.55506877852462	5.00120636104841	5.50291368269702	5.5512129283051	5.317096046466	5.68706582069848	5.2635899258674	0.858061944608226	0.0291024405842634	0.163990880777019
Merged-chr2-11740650-3	chr2	11740540	11740740	+	717.016663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	34928.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	3.89799896672879	3.89975279883806	3.74784293498194	3.92416637445683	3.42973860441031	3.69559799445063	3.56446037137353	4.19007331725493	-0.353634754488262	0.482041564401034	0.756971264643616
Merged-chr4-105483464-1	chr4	105483364	105483564	+	640.0	f0_balb.idr	Intergenic	Intergenic	326117.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.58246663381491	3.35094742379025	3.63132022090815	3.41083372792638	3.18990317398967	3.22419347489705	3.41251439487001	3.5306822329068	-0.524989393748355	0.322004454430541	0.633481969373104
Merged-chr6-97420259-4	chr6	97420150	97420350	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 4 of 23)	intron (NM_145148, intron 4 of 23)	39036.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	5.52034999491367	5.23955702055868	5.35185817288488	5.52418161559929	5.6393073522576	5.58482026544735	5.35498887050973	5.18755113568091	0.0715570643874619	0.805963997198124	0.925320965969831
Merged-chr2-119156240-4	chr2	119156133	119156333	+	764.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033136, intron 2 of 12)	intron (NM_001033136, intron 2 of 12)	801.0	NM_001033136	67809.0	Mm.475909	NM_001033136	ENSMUSG00000070730	Rmdn3	1200015F23Rik|AI131757|Fam82a2|Ptpip51|RMD-3|Rmd3	regulator of microtubule dynamics 3	protein-coding	3.65657494193138	3.78832339615883	3.7114482790886	3.42731391891143	3.86523449779001	3.59577245285141	3.84520149800481	4.03588768979866	0.615113962641524	0.193225087438575	0.493470616874602
Merged-chr4-136163678-4	chr4	136163588	136163788	+	845.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8586.0	NM_177733	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	4.19328332830884	4.25529478695266	3.67955988371843	3.8768784288951	4.60486550508929	4.69592687314914	4.30916437307136	4.36842345859684	1.18762208761475	0.00504130919881216	0.0478246055203505
Merged-chr5-8863726-5	chr5	8863573	8863773	+	926.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011075, intron 26 of 27)	intron (NM_011075, intron 26 of 27)	-30048.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	3.8046791168439	3.66197433238616	3.80521788862971	4.04326323798085	3.90155228790419	3.76155101832963	3.78963654705652	3.64282182806251	-0.195123666983015	0.674801757164244	0.866336495905131
Merged-chr12-102747804-3	chr12	102747701	102747901	+	926.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142939, intron 1 of 1)	intron (NM_001142939, intron 1 of 1)	4041.0	NM_177140	320351.0	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	3.98530312502662	3.83434409807155	4.17280720043088	4.26922037864128	4.40952338661324	4.00242489248297	3.86601152785471	4.03284414506181	0.0541163671234765	0.904589770029552	0.964559678221358
Merged-chr10-94462918-4	chr10	94462838	94463038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-51919.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	6.83203420656815	6.61868068320986	7.24300395991335	7.69699926910335	7.09711142506735	6.64177700861984	7.47194011645975	7.387442293951	0.0158480749838982	0.956820444798788	0.984757116793997
Merged-chr14-14349789-10	chr14	14349731	14349931	+	922.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008369, intron 5 of 11)	intron (NM_008369, intron 5 of 11)	3336.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	4.11226964318927	4.06828696116688	3.96440950250481	3.98851263949124	4.32881703046148	4.28404599241443	3.99917091869102	4.20049091428756	0.469508154006952	0.245476036427522	0.556545271440502
Merged-chr4-44910301-3	chr4	44910194	44910394	+	974.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138590, intron 6 of 8)	intron (NM_138590, intron 6 of 8)	-71100.0	NM_080289	76238.0	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	3.99302870709897	4.29067016315988	4.24197094294081	4.67324075374335	4.09333440961455	3.94146823938286	4.66990302403706	4.09624356758146	-0.253248019948738	0.585065968811963	0.817984533677726
Merged-chr2-31127396-4	chr2	31127298	31127498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	RMER10A|LTR|ERVL	14610.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	5.2799455295143	5.12100857218993	5.08458826933659	5.33430598698188	5.60832798767953	5.15223058734594	5.42329799370407	5.18294341445551	0.271660615155128	0.371128305470353	0.675200430811631
Merged-chr19-41347516-3	chr19	41347445	41347645	+	881.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	37525.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	3.35686060843537	3.2430530577997	3.56961607070348	3.3728908537143	3.61386509274268	3.41066109960205	3.40057081636684	3.23490193794787	0.143447886089871	0.784315940310584	0.916033204453207
Merged-chr9-61330936-4	chr9	61330843	61331043	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37134.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	4.86441517158973	5.04547800275076	4.865204543883	5.31987913471343	4.86722719956031	4.96314325002107	5.31765784287612	5.20054529931685	0.0679848418284263	0.840677249307584	0.939386448382246
Merged-chr5-107944965-4	chr5	107944878	107945078	+	750.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	L1MD1|LINE|L1	42099.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	3.67926646336922	3.60610651670191	3.7393449080699	3.68863598481367	4.50676980439563	4.07869271759696	4.24096683535237	4.04735315152917	1.52143144044781	0.000510657873232967	0.00784548170922714
Merged-chr10-96618395-4	chr10	96618313	96618513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007569, exon 2 of 2)	exon (NM_007569, exon 2 of 2)	1412.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	6.37850565505076	6.1886404383067	6.63384954065576	5.98107256765599	6.38577386532552	6.12158534637958	6.73532491582963	6.32110933870586	0.163042198576931	0.535828730652019	0.789968789424294
Merged-chr8-126594660-4	chr8	126594556	126594756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-14677	-1220.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	8.82519668930013	8.81453251734392	8.70985582867596	8.82760316624653	8.76984227988456	8.94747841022146	9.06347770439663	8.901873707815	0.156452227341289	0.285920630182525	0.597555479938986
Merged-chr12-34433595-3	chr12	34433498	34433698	+	968.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 5 of 27)	intron (NM_001271386, intron 5 of 27)	95291.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	3.92190177805625	3.50500352431481	3.51875483795752	3.84963255936326	3.79098362995036	3.63298832713454	3.72169828266405	3.6836034972849	-0.0237398712364281	0.960794237027568	0.986019634156535
Merged-chr7-93080022-3	chr7	93079915	93080115	+	729.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021427, exon 1 of 2)	5' UTR (NM_021427, exon 1 of 2)	136.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	3.88276585608762	3.40324407039869	3.88336137800967	3.82787675821574	3.76919075719167	3.63469638081693	3.56422217957896	3.68571506030286	-0.287021062361903	0.556699500681822	0.802229294226655
Merged-chr13-92337094-4	chr13	92337006	92337206	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311120, intron 8 of 23)	(CACCT)n|Simple_repeat|Simple_repeat	-17677.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	6.09727727633607	6.11117639610517	6.25984806331145	6.0053788175268	5.5145561517266	5.64498542225025	5.19798277821845	5.81651504536789	-0.906088969555947	0.000807427870950139	0.0113288659413688
Merged-chr11-116671285-2	chr11	116671185	116671385	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027819)	promoter-TSS (NR_027819)	-375.0	NR_027821	66293.0	Mm.432051	NM_025472	ENSMUSG00000020812	1810032O08Rik	-	RIKEN cDNA 1810032O08 gene	ncRNA	5.59546162595541	5.46297416272712	5.05303952034684	4.97974820448508	5.54693508835835	5.66740304541559	4.99102829528297	5.61674192122431	0.343015535320956	0.305274253753254	0.617706648559005
Merged-chr8-126589838-2	chr8	126589738	126589938	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164598, exon 2 of 2)	3' UTR (NM_001164598, exon 2 of 2)	3598.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	4.71223654094905	4.80077837316208	4.91787801830722	4.79110748250447	5.52933856336992	5.30144992016215	5.28078070542211	5.35845476265143	1.08227390932573	0.000307590661025069	0.00517746624522363
Merged-chr5-123436956-1	chr5	123436856	123437056	+	612.0	f0_c57.idr	intron (NM_133917, intron 1 of 16)	intron (NM_133917, intron 1 of 16)	42158.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	3.32191236202794	3.52276393634615	3.26197793006041	3.0211663937556	3.78504310805981	3.60565762446563	3.0538840077666	3.26033622559763	0.589777377936515	0.319831152480105	0.631656381031906
Merged-chr1-91179261-4	chr1	91179211	91179411	+	790.016663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178401)	promoter-TSS (NM_178401)	-511.0	NM_016894	51801.0	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	3.80518861326072	3.74809589624339	3.94882723483673	4.10580166096222	3.77829341826041	3.81858662094674	3.51312593914885	3.69856634222939	-0.621504706231325	0.186772298938278	0.484855956312327
Merged-chr11-120232799-4	chr11	120232692	120232892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347621)	promoter-TSS (NM_001347621)	-155.0	NM_001347621	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	6.43471527271707	6.6488714273696	5.99154600251724	6.46387724723022	7.28905244269081	7.34678827182409	7.18566773898222	6.99744866932373	1.11909676689461	6.67869577651516e-07	2.41802078675775e-05
Merged-chr4-120825784-4	chr4	120825681	120825881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277095)	promoter-TSS (NM_001277095)	-40.0	NM_008692	18046.0	Mm.318389	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	7.70953812002019	7.76314268761399	7.37734266955124	7.26264559055166	7.84906199313674	7.97459972973177	7.92229098845129	7.85120028104464	0.473898553737102	0.0127336089379423	0.0937684844085245
Merged-chr10-68058131-1	chr10	68058031	68058231	+	835.666687	f0_balb.idr	Intergenic	Charlie1|DNA|hAT-Charlie	78561.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	3.74805381605845	3.78310566264202	4.18136400665074	3.89744020335514	2.98143570726714	3.12657130115668	3.29117162706309	3.01014413521485	-3.27293172825013	9.86854299072685e-07	3.46196659209929e-05
Merged-chr16-49904530-4	chr16	49904433	49904633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 8 of 9)	Lx8|LINE|L1	48879.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	6.38691258981436	6.04926673702054	6.97594480104121	6.90955060535998	5.89327106517935	6.00799527688019	6.28366215175417	6.02252206383887	-0.875167983872343	0.00220949847417401	0.0252548578007005
Merged-chr1-60657244-4	chr1	60657143	60657343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89145.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	6.23891696413601	6.28210224371115	6.4545383989602	6.54574292371469	6.26933292735497	5.95539570890704	6.35434290959845	6.41664682717227	-0.198888180289161	0.397799928309809	0.696054529321669
Merged-chr4-137871119-3	chr4	137871026	137871226	+	878.2777710000001	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	L2|LINE|L2	8889.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	4.18755863236481	4.51992546906855	4.38106442937247	4.38754395080952	4.56867132720578	4.71961839262057	4.44742244368683	4.62219834036289	0.480867946906793	0.187617211363411	0.486056614654639
Merged-chr9-61277815-4	chr9	61277718	61277918	+	765.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045334, intron 3 of 4)	intron (NR_045334, intron 3 of 4)	15991.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	3.42906919843103	3.70076165887712	3.29623220682342	3.64479591017615	3.69445900498351	3.72554616430552	4.01034572758695	3.85680945543924	0.866704491351979	0.0812698087484707	0.309397582949155
Merged-chr10-117376984-4	chr10	117376884	117377084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310609)	promoter-TSS (NM_001310609)	-11.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	7.26583583592123	7.63061276160222	7.17312565760539	7.57605418733903	7.92281512280383	7.77999360842087	7.71184966165373	7.59751824828833	0.428642088113671	0.0275389359798607	0.158335535065469
Merged-chr15-53139053-4	chr15	53138957	53139157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	207126.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	7.74608452572614	8.34365573434393	8.39073817911039	8.16371899451943	7.95776593052684	7.74852246725626	7.87874550210433	7.5168668010922	-0.510210734937932	0.0122577209760973	0.0912744347063114
Merged-chr13-49242904-4	chr13	49242791	49242991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028340, intron 1 of 4)	intron (NM_028340, intron 1 of 4)	5403.0	NM_001360772	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	6.45671746413555	6.72321054992538	6.17557178266161	6.24293775535728	6.22981159660488	6.04057905610403	5.8364742862975	5.81107841089489	-0.641344527508846	0.014576992258235	0.102760793497961
Merged-chr16-45192773-3	chr16	45192676	45192876	+	824.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-31561.0	NM_001037719	208154.0	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	3.35192912376572	3.32632163836907	3.23755744633924	3.51389675248832	3.62242633566977	3.22067912116381	3.03547098876003	3.23598019655762	-0.207449314157437	0.718867935708848	0.887684154524562
Merged-chr2-68826430-1	chr2	68826330	68826530	+	564.0	f0_balb.idr	Intergenic	Lx5c|LINE|L1	-35011.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	3.42653593851315	3.29853926634459	3.42701936514564	3.08876674197522	3.2426539030988	3.48710349540437	3.46499946061438	3.31302689824158	0.25760227337464	0.629301586052121	0.842116188261833
Merged-chr10-80098783-4	chr10	80098669	80098869	+	982.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359637, intron 1 of 3)	intron (NM_001359637, intron 1 of 3)	2418.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	5.94182697495564	6.03607660309561	5.29414695807852	5.89448120515446	6.06400472826797	5.76676556178234	6.32131770451707	5.9386283598158	0.337168814095217	0.240609823060747	0.551185699479073
Merged-chr4-107314334-4	chr4	107314225	107314425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145550)	promoter-TSS (NM_145550)	-38.0	NM_145550	230584.0	Mm.29118	NM_145550	ENSMUSG00000057375	Yipf1	C030002N13Rik	Yip1 domain family, member 1	protein-coding	7.11678816743563	7.13911982437422	6.99795880830612	7.22632543094471	6.95224479686462	6.796971067765	7.15963001807202	6.87422800491487	-0.241436809222271	0.215647713431999	0.521864093916849
Merged-chr4-129623938-4	chr4	129623849	129624049	+	955.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025455)	promoter-TSS (NM_025455)	-41.0	NM_025455	66264.0	Mm.383215	NM_025455	ENSMUSG00000028795	Ccdc28b	1110002E08Rik|1810010N17Rik	coiled coil domain containing 28B	protein-coding	4.87602221955464	4.59489481391354	4.80531039493894	4.89693568445059	4.69101326876789	4.60321198453441	5.04460527973302	4.87355165034579	0.0165516496495413	0.961564767628151	0.986252328551272
Merged-chr6-72155912-3	chr6	72155845	72156045	+	952.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-32748.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	3.31334879704273	3.41634014398424	3.31379580536641	3.35678174532847	2.93527198180408	3.17974336659064	3.30086900755764	3.31198796812559	-0.636126067382029	0.253593303753456	0.564898241173811
Merged-chr12-98278458-4	chr12	98278353	98278553	+	833.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9818.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	4.10674383024949	4.02506274270984	3.95972271221534	4.47891067026573	4.1352750375527	4.02786847723573	4.13481809032166	4.00852303820265	-0.257838335458448	0.553999616269032	0.800500121223594
Merged-chr12-8927818-4	chr12	8927738	8927938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008640, intron 1 of 6)	MTD|LTR|ERVL-MaLR	6531.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	8.20154199579269	8.13886283635127	8.26233756207371	8.52714884408041	8.47338468847904	8.34972602034455	8.46503059530145	8.41992697405278	0.163344916808151	0.322611584098094	0.634065640719627
Merged-chr8-94333577-2	chr8	94333477	94333677	+	984.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001205311, exon 5 of 25)	exon (NM_001205311, exon 5 of 25)	4369.0	NM_001205311	20497.0	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	3.45665527766268	3.27771890596954	3.1709616890861	3.13044779686862	3.28659078363723	3.3459581803962	3.3909395479277	3.45512527546647	0.408156121344751	0.437887683203779	0.726079330089729
Merged-chr15-67785853-3	chr15	67785726	67785926	+	908.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	473030.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	3.43936652691384	3.55151953336417	3.60203262088947	3.49799376289386	3.66663279493961	3.66613008695811	3.42707292231661	3.25311938828468	-0.00923726600159801	0.985475947388846	0.99468068720618
Merged-chr6-148940563-4	chr6	148940446	148940646	+	598.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361398, intron 1 of 4)	B2_Mm2|SINE|B2	4280.0	NM_001355645	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	3.34006569237347	3.29828880236136	3.58479158225274	3.74812947434892	3.7510727219739	4.004534101573	3.90767689836135	3.46640199099354	0.838699977021191	0.113192590440471	0.371906975057362
Merged-chr16-3718171-4	chr16	3718062	3718262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161790)	promoter-TSS (NM_001161790)	-38.0	NM_001161791	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	5.51321460955935	6.19809666659579	5.87471871306775	5.90781877216248	6.30830668822312	6.42304765169177	6.26939023556497	5.74356740331581	0.483504211005121	0.0853215397207061	0.318041894659862
Merged-chr8-85028829-4	chr8	85028710	85028910	+	841.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026760, intron 1 of 2)	intron (NM_026760, intron 1 of 2)	1977.0	NM_026760	68544.0	Mm.196005	NM_026760	ENSMUSG00000041203	Trir	1110002H14Rik|2310036O22Rik|AI854688	telomerase RNA component interacting RNase	protein-coding	3.80398835268333	4.04261839830666	3.75246146408968	3.58382945599469	3.74986341560211	3.50401151677761	4.01855136516197	3.94671079940576	0.0581881593917952	0.904183233212191	0.964538903811323
Merged-chr11-22436418-4	chr11	22436329	22436529	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-75854.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	5.63146987575281	5.82432079553502	5.48566583890449	5.93904011527065	4.6487168706084	4.82478496737772	4.51281992958714	4.9411229059452	-1.90256295481537	4.6109544505296e-09	2.60685565396542e-07
Merged-chr17-33629392-4	chr17	33629287	33629487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026712, intron 1 of 5)	intron (NM_026712, intron 1 of 5)	295.0	NM_026712	328801.0	Mm.181488	NM_026712	ENSMUSG00000073423	Zfp414	0610030H11Rik|Znf414	zinc finger protein 414	protein-coding	6.74649339000599	6.95995694865821	6.39059623527971	6.5245333478326	6.62428186515949	6.77413535482492	6.64093749779955	6.51089553393924	-0.0449147724270599	0.842458614210052	0.940205423428672
Merged-chr13-74362333-4	chr13	74362266	74362466	+	966.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001168658, exon 4 of 4)	3' UTR (NM_001168658, exon 4 of 4)	1634.0	NM_001033042	432779.0	Mm.324679	NM_001033042	ENSMUSG00000021579	Lrrc14b	AI595366	leucine rich repeat containing 14B	protein-coding	4.66552890700928	4.67655424075181	5.05896424385334	4.6511172504739	4.74516217328305	5.06772490828748	4.64476968976078	5.14414775743862	0.297019909261832	0.399518735904317	0.697643494012399
Merged-chr13-101680040-2	chr13	101679940	101680140	+	953.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001077495)	TTS (NM_001077495)	12590.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	3.06044504550778	3.27865104218037	3.72042621240017	3.10369497356602	3.31748871087419	3.51955196017779	3.65564599908793	4.0477790584274	1.13191450167491	0.0525915134314009	0.238951317153944
Merged-chr11-121706929-4	chr11	121706839	121707039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	4512.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	5.67675798270561	5.87803250833672	5.24404657736601	5.8560170054217	6.23716200189776	5.56355720481782	5.90802813098736	5.93419235831735	0.39468092086692	0.184580787698495	0.482120872173176
Merged-chr2-146134478-3	chr2	146134377	146134577	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87520.0	NM_016889	53626.0	Mm.379070	NM_016889	ENSMUSG00000068154	Insm1	IA-1	insulinoma-associated 1	protein-coding	4.43277558286179	4.79661849290219	4.5506355334663	4.68988558485702	4.12194262273876	3.8751956348187	4.09271085897175	4.25577159552933	-1.29795551510756	0.00137033752420295	0.0173742883212045
Merged-chr9-107338409-4	chr9	107338315	107338515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133984)	promoter-TSS (NM_133984)	-65.0	NM_133984	69536.0	Mm.259467	NM_133984	ENSMUSG00000032579	Hemk1	2310008M14Rik|AW049265	HemK methyltransferase family member 1	protein-coding	6.07423037086368	5.94592533729208	5.56361577419568	5.36061413675227	6.14086091702589	5.93525193958563	6.32795933719144	6.03023220832714	0.584510363588685	0.0398073178707626	0.201167559724744
Merged-chr17-23771672-4	chr17	23771563	23771763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153791)	promoter-TSS (NM_153791)	-61.0	NM_001357994	224613.0	Mm.328835	NM_153791	ENSMUSG00000040097	Flywch1	E030034P13Rik|mKIAA1552	FLYWCH-type zinc finger 1	protein-coding	7.51605940280123	7.58717826573976	7.11509709662932	7.25004781524744	7.54369219907575	7.63888885255307	7.62494119730475	7.36846399076094	0.226142450412639	0.243552913924669	0.554610038028735
Merged-chr8-83783327-4	chr8	83783203	83783403	+	943.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41992.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	4.71757274550287	4.86854569828808	3.96805902506173	4.28009538930799	4.42593859684937	4.46017607377075	4.31125855743462	4.13312551456371	-0.376142270496648	0.393549857992282	0.692658259780245
Merged-chr10-67315275-4	chr10	67315166	67315366	+	779.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29985.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	3.91832695602161	3.76079526298883	3.46947431638731	3.6768510940066	3.96440556768767	3.83344854309907	3.64231517026868	4.31920424640893	0.708911529572484	0.142812160517324	0.420728727017203
Merged-chr16-35904581-4	chr16	35904477	35904677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33195.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	5.97170883439321	6.07051914576407	6.208367405157	6.44708800176595	6.17928552358553	6.02833981544126	6.50010231336555	6.40219418692837	0.129112996375745	0.609178199208313	0.83089280248568
Merged-chr13-54983240-4	chr13	54983143	54983343	+	871.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153131, intron 1 of 15)	intron (NM_153131, intron 1 of 15)	33832.0	NM_001311128	107448.0	Mm.23573	NM_153131	ENSMUSG00000025876	Unc5a	Unc5h1|mKIAA1976	unc-5 netrin receptor A	protein-coding	3.98297355662607	4.13816447606902	3.98352229671256	4.12223774746407	4.20685154571885	4.40523577066085	4.45784356587033	4.58332744402451	0.850236145445662	0.0326889171486352	0.177196286171861
Merged-chr13-42073461-4	chr13	42073339	42073539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	21418.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	6.62646293179122	6.64214354841501	6.7036968999203	6.7112411428518	6.81791647352548	6.72333051238352	6.75478413550962	6.54217854540902	0.0634746144696672	0.752343510907372	0.902425600431109
Merged-chr5-72868507-4	chr5	72868395	72868595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113460)	promoter-TSS (NM_001113460)	-47.0	NM_001113460	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	6.68124075731178	6.54669431514788	5.85147512251516	6.72130442909582	6.51911827015091	6.78349966490218	6.66264466397402	6.49041580776666	0.160493733388523	0.537778913959714	0.791223080787503
Merged-chr1-165193930-4	chr1	165193845	165194045	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151711, intron 1 of 6)	CpG	488.0	NM_145512	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	4.29175331623414	4.35791845525319	4.89789291410928	4.3367323034587	4.45386952582255	4.42154732844095	4.41003728178734	4.7347763565091	0.0566518367797548	0.885868036182615	0.95718457248159
Merged-chr14-99763538-3	chr14	99763437	99763637	+	984.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	386259.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	3.49064496973002	3.75544212951171	3.43680890349725	3.83954988675852	3.23631283386048	3.00626346117994	3.3090615122563	3.37834025342837	-1.46120319283865	0.010178630899889	0.0799209786180763
Merged-chr9-82942072-4	chr9	82941977	82942177	+	914.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081216, intron 7 of 39)	intron (NM_001081216, intron 7 of 39)	33412.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	4.80258458666906	4.80124700567124	4.56747059560635	5.21397367982536	4.41595281473014	4.40948329962035	4.84953828906978	4.76379326393646	-0.558899167955511	0.144878575250319	0.424036712956412
Merged-chr13-34193543-4	chr13	34193439	34193639	+	799.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 7 of 10)	intron (NM_001033167, intron 7 of 10)	30575.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	4.18398382455041	4.33794862994554	4.60980358124178	4.34873825790563	4.08834731278551	4.36188793579943	4.65719423317466	4.53237194325043	0.10124869908474	0.800983800399206	0.923337043240231
Merged-chr19-4811703-4	chr19	4811620	4811820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019869)	promoter-TSS (NM_019869)	-86.0	NM_019869	56275.0	Mm.276338	NM_019869	ENSMUSG00000006456	Rbm14	1300007E16Rik|PSP2|Sytip|p16|p16K	RNA binding motif protein 14	protein-coding	8.01678586424252	8.16485285847763	7.77774569493885	7.96396507950877	8.0961634937474	8.05554253449171	7.72392012049843	7.86527981256029	-0.0545079401396642	0.76122441225915	0.906512173824769
Merged-chr3-52090339-6	chr3	52090202	52090402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	14704.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	4.93018083882209	5.24080747949165	5.00448023214524	4.76389218924923	5.21858185059537	5.40517022377904	4.90750493112944	5.42223165675922	0.502401435119521	0.123884054695842	0.390606561647634
Merged-chr6-17635170-4	chr6	17635061	17635261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1849.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	6.51738452640235	6.69308989052718	6.46581491273373	6.40498964522877	6.95480966062778	6.95764641061362	6.87896735801626	6.80444145293801	0.547374418282737	0.00676220261186092	0.0593644326232916
Merged-chr12-70110931-3	chr12	70110890	70111090	+	958.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286079, intron 1 of 28)	intron (NM_001286079, intron 1 of 28)	639.0	NR_104398	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	3.26311750984919	3.60360548209469	3.32434822321572	3.24654228277015	3.027570734717	3.31429987709929	3.18885545368809	3.88869994827578	0.107915774102456	0.856776143070286	0.94611171751528
Merged-chr9-119982526-4	chr9	119982415	119982615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153287, intron 1 of 4)	intron (NM_153287, intron 1 of 4)	508.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	5.8175735840514	5.86914066564128	5.74235464049538	5.60351607676079	6.14890885091046	6.01923197156546	6.22043842094615	6.15763234058634	0.621169140013999	0.00967033695996116	0.0770800576117666
Merged-chr11-59226427-2	chr11	59226329	59226529	+	764.5	f0_balb.idr|f0_c57.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	1733.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	4.02332541811631	4.12446188970582	3.97645572211716	3.88303250529914	4.12471591986247	3.94240485664865	3.95971892442746	3.82089556838295	-0.0646240299438219	0.880503183202608	0.955181994949486
Merged-chr11-115062205-4	chr11	115062103	115062303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172050)	promoter-TSS (NM_172050)	-164.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	5.21942028327361	5.0956461736382	5.31258527503286	5.19298324871853	5.18493976163058	5.22729578905497	5.31525753055097	5.66715168577907	0.279332924362217	0.350305251927799	0.657881784833351
Merged-chr6-72517122-2	chr6	72517022	72517222	+	599.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27269.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	2.81315039957661	2.66353598627127	2.45843511739354	2.52983605314352	2.95552232819471	2.92253634729273	2.86327896822215	2.98656402392001	1.49799542594546	0.019573526030503	0.126095032068528
Merged-chr4-140987088-7	chr4	140986974	140987174	+	985.9387820000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029097, exon 1 of 29)	exon (NM_029097, exon 1 of 29)	201.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	4.75229986312963	4.60543742168289	4.98476129304187	4.37768318818491	4.90629976489858	4.29641017774626	4.09244073618819	5.06862507052044	-0.0701849840458394	0.874724078930441	0.952925927223413
Merged-chr19-18608113-3	chr19	18608009	18608209	+	917.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	23704.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	3.22473988090099	3.41990447636249	3.28092816050306	3.46710358285009	3.13046429658765	3.14887649858776	3.21335403557698	2.9056289246318	-1.00084094370805	0.0813200753939625	0.309417833291006
Merged-chr5-99293977-4	chr5	99293869	99294069	+	818.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41042.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.0112622418768	4.15065846643115	4.25020794313268	4.0927093367946	4.27103554341026	4.18743696998753	4.46583446844918	4.11006785760424	0.352420053646821	0.376133863560442	0.678996507085181
Merged-chr18-84590398-4	chr18	84590247	84590447	+	934.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033341)	promoter-TSS (NM_001033341)	-843.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	3.95471016271837	4.25241988649272	4.40931319258404	4.34626757506218	4.13313618250994	4.07802991411217	3.9923482106498	4.32778479576178	-0.299980693279959	0.470151862854485	0.748941195669928
Merged-chr8-109692921-4	chr8	109692831	109693031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155034, intron 1 of 10)	CpG	363.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	6.2770276682283	6.52469851360817	6.79708340497733	6.14024942171939	6.36203129311126	6.37535826872919	6.26521604613773	6.65652754837139	-0.0367513050744779	0.883719179172577	0.956342055191766
Merged-chr9-7569161-4	chr9	7569076	7569276	+	897.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008611)	TTS (NM_008611)	-2220.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	4.02040184500083	4.05324980772224	4.92818679102218	4.58080329398961	4.26369440728444	4.14678149723365	4.20578414577128	4.17382303997474	-0.605077690820324	0.181612737346542	0.47824687501256
Merged-chr9-50462557-4	chr9	50462449	50462649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31976.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	6.00762628136451	5.85381449964865	5.59972178839682	5.76322968560624	5.7109070549872	5.8035601374019	6.14859580823393	5.98370200527949	0.171672703620602	0.512419640676943	0.775817701566463
Merged-chr11-54257160-3	chr11	54257067	54257267	+	820.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7268.0	NM_009969	12981.0	Mm.4922	NM_009969	ENSMUSG00000018916	Csf2	CSF|Csfgm|GMCSF|Gm-CSf|MGI-IGM	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding	3.50551628642778	3.62743358518546	3.20978277658803	3.35886036446712	3.52376583499542	3.4494269694326	3.43855548668949	3.50403455766152	0.164484752926143	0.746955967193262	0.900321380242646
Merged-chr6-33824235-4	chr6	33824141	33824341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 12 of 17)	intron (NM_009148, intron 12 of 17)	-205207.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	7.06870189667187	7.48717386180108	7.26664348944518	7.56014459826545	7.29132255439769	7.29637234844121	7.13042042840862	7.20687078989126	-0.186914095915523	0.343531807058153	0.652237361779596
Merged-chr3-96747076-4	chr3	96747015	96747215	+	807.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026406, intron 1 of 8)	intron (NM_026406, intron 1 of 8)	19504.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	3.73061111856657	3.4476510918208	3.44961191076209	4.03671359119217	3.73599876997135	3.56431120551115	3.76478138787178	3.82620110111086	0.0566299569275201	0.912736991957324	0.967332931462455
Merged-chr2-154372705-4	chr2	154372614	154372814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025876)	promoter-TSS (NM_025876)	5.0	NM_025876	66971.0	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding	6.07690247475154	6.29373747610354	5.94376008021929	5.97602427988023	6.31554905789725	6.37425334617818	5.91352016401842	6.28764467716161	0.245660188794854	0.315769826433945	0.627651138259863
Merged-chr2-144555383-2	chr2	144555283	144555483	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019787)	promoter-TSS (NM_019787)	-846.0	NM_001252544	27054.0	Mm.248492	NM_019787	ENSMUSG00000027429	Sec23b	-	SEC23 homolog B, COPII coat complex component	protein-coding	3.07349856735677	3.30082427666279	3.07388201133642	2.66885032885811	3.28460782701894	3.24744605816855	3.00005688032441	3.19085505813282	0.559026628861788	0.367162531031508	0.671555704499222
Merged-chr7-100446492-4	chr7	100446385	100446585	+	993.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 28 of 32)	intron (NM_001017985, intron 28 of 32)	-26506.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	5.00018285484108	5.35115198664627	5.00101891220788	4.76612111212168	4.98256522207746	5.24155089013214	5.04385056709244	4.88913641976357	0.0106914265678216	0.974472779030045	0.990913996665327
Merged-chr8-75151050-4	chr8	75150949	75151149	+	928.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41540.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	4.49288491855563	4.54681555664569	5.09763478645359	5.01676708112933	4.87861866079039	4.80877925726611	5.43171723305511	4.49080229265382	0.252406725427439	0.533160959658794	0.788486680813491
Merged-chr6-24955270-6	chr6	24955161	24955361	+	865.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177013, exon 1 of 1)	exon (NM_177013, exon 1 of 1)	864.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	3.59085532341772	3.4957185906	4.0311626410702	3.49688540209202	2.9811386507928	3.71158642889079	3.22079635852008	3.42155041012749	-1.04583279628972	0.0786699436569536	0.303487503092423
Merged-chr12-69473115-4	chr12	69473000	69473200	+	941.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038060, intron 2 of 4)	intron (NR_038060, intron 2 of 4)	2450.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	4.93366198894569	4.47274633726278	4.86468554811449	5.38243128973194	4.74959370244003	4.52631238329208	4.76815915725036	5.02897759212417	-0.386660534322069	0.323258283732923	0.63472475260819
Merged-chr8-60867848-7	chr8	60867730	60867930	+	912.11908	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22563.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	4.00926818686049	3.76491691856165	4.1368934926992	3.97903299580978	3.78006981184547	3.76577790186175	3.6932914049411	4.00741781428417	-0.460940392454269	0.306395711692172	0.618868909266093
Merged-chr14-122056966-4	chr14	122056854	122057054	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22280.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	5.2509663109584	5.97982447592417	5.31324124515625	4.86477286006539	5.399758624343	5.42767139377652	5.22567710624273	4.75853043181315	-0.330779910885936	0.390943371904291	0.690867352703316
Merged-chr7-141447651-4	chr7	141447545	141447745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360657)	promoter-TSS (NM_001360657)	-6.0	NM_026020	67186.0	Mm.380435	NM_026020	ENSMUSG00000025508	Rplp2	2700049I22Rik	ribosomal protein, large P2	protein-coding	6.76834457257872	6.85710304209844	6.30123357450201	6.52309689123422	6.90537945480064	6.73374487104245	6.66355611789178	6.6167555168063	0.161310672235435	0.473871478712774	0.751419042579231
Merged-chr16-36067950-4	chr16	36067850	36068050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027342, intron 1 of 4)	intron (NM_027342, intron 1 of 4)	3565.0	NM_027342	70186.0	Mm.212991	NM_027342	ENSMUSG00000003955	Fam162a	2310056P07Rik|HGTD-P	family with sequence similarity 162, member A	protein-coding	5.5568694444894	5.32011942880573	5.00293722378323	5.06755101179115	5.42298689767034	5.45448567831668	5.28399653261777	5.57858235877743	0.349176009185694	0.247628753936537	0.558827148043778
Merged-chr12-4159498-3	chr12	4159408	4159608	+	893.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	25355.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	4.27942439067658	3.80927951863967	3.70423101897195	3.6135493839675	3.44309104286201	3.71547266310507	3.46452324695546	3.20369435509114	-1.27846900050709	0.0199590189097011	0.127852753039306
Merged-chr2-101886226-4	chr2	101886161	101886361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029635)	promoter-TSS (NM_029635)	-1.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	6.79839441834412	6.85328569593829	7.09852836049962	6.8080136449687	7.08753754191035	7.20364334942601	7.06280031410407	7.12773695550172	0.320098534897704	0.0943046355042454	0.335973860539208
Merged-chr11-61469500-4	chr11	61469388	61469588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15496.0	NM_001291024	22671.0	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	7.7346815693817	7.6962918170061	7.54023060017674	7.52972900613437	7.77668041053855	7.83183415035873	7.4846247226863	7.63245621538464	0.086530733965895	0.624976583451593	0.839665122417083
Merged-chr9-66831133-4	chr9	66831045	66831245	+	981.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026674, intron 2 of 5)	intron (NM_026674, intron 2 of 5)	3561.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	5.63840430962467	5.75231722392067	5.8243635721003	5.88685205247016	5.35644306842617	5.19057593943124	5.06228446222795	5.41862717312205	-0.893941945243735	0.00141118869426706	0.0177782301007495
Merged-chr4-126024653-4	chr4	126024574	126024774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045561)	promoter-TSS (NR_045561)	15.0	NM_001252651	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	6.25442929056305	6.79936664463438	5.78857692083757	6.07869253596848	6.61493801135648	6.78616472707152	6.45395355724029	6.1062365393725	0.338463621649032	0.253012319142147	0.564267573136322
Merged-chr5-114827625-4	chr5	114827523	114827723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4155.0	NM_181075	330173.0	Mm.482205	NM_181075	ENSMUSG00000092486	2610524H06Rik	-	RIKEN cDNA 2610524H06 gene	protein-coding	5.53482497314753	6.01740949824553	5.79957503751349	5.65429557919141	5.85142235281685	5.42350410931263	6.06391981236598	5.88720694621114	0.112903311254836	0.687606745141111	0.872380452246745
Merged-chr10-40316680-3	chr10	40316590	40316790	+	884.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-14502.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	3.76855813977191	4.01014874307977	3.76910324656942	3.4963850859324	3.8220787626994	3.94102939179042	3.26810116101352	3.91233635483843	-0.0202598751853579	0.969268333712411	0.988899985883694
Merged-chr3-153262938-4	chr3	153262838	153263038	+	932.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	35711.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	5.23470988717613	5.62286758280912	5.72487478739996	5.76155882496636	5.75304836697313	5.26981983689594	5.54469862651028	5.89840389553397	0.0532484949823809	0.858460621089349	0.946576014812915
Merged-chr2-91096729-4	chr2	91096643	91096843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011355)	promoter-TSS (NM_011355)	65.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	7.6396843650651	7.84547045174453	7.8156260939875	7.68675926866209	7.76964508528083	7.43287408285155	7.59504458332321	7.54753971068723	-0.194487161087501	0.267996821313926	0.579836892388985
Merged-chr10-24164322-4	chr10	24164215	24164415	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	14998.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	5.571128538233	5.23823666458914	5.35061796892623	5.59543842529032	5.2600121182451	5.61202347702309	5.5688659337002	5.18610475962937	-0.0761055824761895	0.797380634464045	0.921630258034137
Merged-chr2-103955879-4	chr2	103955791	103955991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-2104.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	6.18449325008674	6.23572026072196	5.95656128722896	6.47861168876479	5.6891183858921	5.76960602894364	6.22736033088529	5.92929690958183	-0.509855591689302	0.0556624777466109	0.246922270048317
Merged-chr12-117831436-3	chr12	117831341	117831541	+	839.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12420.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	4.09447745370674	4.26063772164337	3.96620541007731	3.16848664535738	3.53366959337689	3.46091514549201	3.70206945697486	3.82041983181707	-0.87379675252978	0.12842731910668	0.398731926489329
Merged-chr2-124928559-4	chr2	124928464	124928664	+	960.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139563.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	4.70052050274448	5.05104878562383	5.22293206956209	4.80279517344157	4.77730501857377	4.70782165009755	4.59700182796857	4.69822642644201	-0.519593767938641	0.135430354941002	0.409663730157903
Merged-chr4-125085146-4	chr4	125085082	125085282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290701)	promoter-TSS (NM_001290701)	48.0	NR_151472	70088.0	Mm.291214	NM_027310	ENSMUSG00000028863	Meaf6	2310005N01Rik|2810036M01Rik	MYST/Esa1-associated factor 6	protein-coding	7.05465732407149	6.92182430602542	6.88208712975841	6.79236618741101	6.77105482334108	7.03152063082314	6.77906346149867	6.64386463579952	-0.137847856328231	0.497985102922267	0.767413921949037
Merged-chr17-35780525-4	chr17	35780400	35780600	+	979.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045459, exon 3 of 3)	non-coding (NR_045459, exon 3 of 3)	8050.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	5.31596334843562	5.06887516008547	5.67244418321313	5.99545023082559	4.72432548657291	4.77752493206098	5.03276583532907	5.19009919867114	-1.17080855243263	0.00120802431758604	0.0156454140290767
Merged-chr1-36789612-4	chr1	36789506	36789706	+	954.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	10622.0	NM_001289612	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	4.51046223317334	4.52983049873469	4.46845354173166	4.76161478907919	4.44483130761297	4.00289972452471	4.94024897672211	4.77256532986498	0.0141720654003756	0.973015647655608	0.990282195228149
Merged-chr10-100148296-1	chr10	100148196	100148396	+	614.0	f0_c57.idr	Intergenic	Intergenic	132475.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	3.44838328221136	3.32996240290267	3.3893374389928	3.38407701662467	3.72544345621588	3.83040579385526	3.54588402395648	3.55826495475272	0.921638386304509	0.0572123135025595	0.250696581063696
Merged-chr13-22040428-3	chr13	22040327	22040527	+	822.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175656)	TTS (NM_175656)	935.0	NM_175656	319158.0	Mm.14775	NM_175656	ENSMUSG00000060639	Hist1h4i	-	histone cluster 1, H4i	protein-coding	3.42725383057534	3.35749307819046	3.69646727154769	2.96662580301789	3.66397802813863	3.76779922490557	3.81608514121817	3.30125926775856	0.882997167856832	0.118383686922539	0.380653573456868
Merged-chr2-143847100-4	chr2	143846997	143847197	+	961.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291061, intron 3 of 7)	LTR16E1|LTR|ERVL	16076.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	4.56915211399055	5.05426136084524	4.76341769718262	4.84970386166177	4.49686874228791	4.42107799522975	4.37199433345668	4.72385597682498	-0.68331923360005	0.060816254271604	0.260632197170119
Merged-chr1-170174334-4	chr1	170174264	170174464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 1 of 10)	intron (NM_133806, intron 1 of 10)	600.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	4.90901808769701	5.21944588980046	4.94695100613701	4.90145338360472	5.19855103985743	4.92868311485507	5.09288181164113	5.34718366970723	0.300762193530498	0.339680128263884	0.648832933028295
Merged-chr8-70755967-4	chr8	70755856	70756056	+	968.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009001, exon 2 of 5)	exon (NM_009001, exon 2 of 5)	1277.0	NM_001166399	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	5.05500202598109	5.01753156021667	5.55789064012653	5.4852802498465	4.45903417077278	4.47142880650698	4.78245713969835	4.72075634615501	-1.40175600693239	8.08710884341991e-05	0.00169730177130641
Merged-chr11-97436104-4	chr11	97436052	97436252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14008.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	6.10489767856138	6.11634539698403	6.238496031809	6.19352239200781	5.84185258706216	6.28050412993842	5.65446685203238	5.59281897063655	-0.470442821333401	0.0745963347828237	0.294492097254942
Merged-chr11-44476617-4	chr11	44476513	44476713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6065.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	5.08759705321655	5.60829229844333	5.08846447757421	4.52946423551365	5.70957155510071	5.26503890303504	5.25186332632354	4.59465732255492	0.249908871892706	0.549825720008512	0.798157259896108
Merged-chr5-140419341-4	chr5	140419237	140419437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133916)	promoter-TSS (NM_133916)	32.0	NM_133916	27979.0	Mm.21671	NM_133916	ENSMUSG00000056076	Eif3b	AL033316|AL033334|AL033369|AW208965|D5Wsu45e|EIF3-ETA|EIF3-P110|EIF3-P116|Eif3s9|PRT1	eukaryotic translation initiation factor 3, subunit B	protein-coding	5.52294444383734	5.64129911344554	5.57803125801613	4.99888481186702	5.79752285597734	5.52376423012315	5.49608142628049	5.85722690822612	0.414969106039171	0.175318743548752	0.470001613764326
Merged-chr6-50559038-2	chr6	50558938	50559138	+	949.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7436.0	NM_007808	13063.0	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	2.93411874890452	2.90881797781596	2.99987132598496	3.01972532849046	3.34513816277922	3.10867599142257	3.21977107476382	3.17683477432954	0.989022541841606	0.0782550234682671	0.302674255037102
Merged-chr5-95941905-3	chr5	95941795	95941995	+	760.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15044.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	4.0570632378551	3.6540027899789	3.38115269493615	3.72504642477495	3.50892422345821	3.49589158265483	3.54537564269826	3.44148544068563	-0.723493027734451	0.159487569647613	0.447041258562947
Merged-chr10-79417296-4	chr10	79417191	79417391	+	869.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-51667.0	NM_001104537	625029.0	Mm.469865	NM_001104537	ENSMUSG00000091381	Vmn2r83	EG625029	vomeronasal 2, receptor 83	protein-coding	4.82866255523348	4.4143685748243	4.95339513954215	4.7090097852061	3.93847347846533	4.28862708986835	4.47502807520152	4.61394778821254	-0.888430010315909	0.0311914994293274	0.171827237665823
Merged-chr6-97454625-3	chr6	97454493	97454693	+	717.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	4693.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.67332165281766	3.53029853375345	4.21704432603822	3.40209949880016	3.38105472441555	3.68454749048716	3.43388394941968	3.56306766233275	-0.688526208631032	0.206685778708506	0.510683565856314
Merged-chr2-152398188-4	chr2	152398075	152398275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011438)	promoter-TSS (NM_011438)	-129.0	NM_011438	20667.0	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	5.84818992200341	5.99630592893973	5.72677079551817	5.60535030572278	6.17863756469744	6.02401837475523	5.72307937953603	5.64323596550241	0.205462691684844	0.453334472229732	0.73743388255228
Merged-chr3-34019976-4	chr3	34019871	34020071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113188)	promoter-TSS (NM_001113188)	-108.0	NM_008053	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	7.47120346004036	7.52866914111079	7.70629122749773	7.60553699681082	7.46059584657334	7.80178648702942	7.60400253843975	7.09300161842466	-0.0911463080024316	0.653325977499002	0.854997557892684
Merged-chr7-113186185-2	chr7	113186085	113186285	+	593.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21280.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	2.98269368404773	2.92963712086329	2.9239153672355	3.12636529692347	2.72608785870147	2.90221722173284	2.85250601539206	2.86057994740656	-0.761393064443603	0.214838312531764	0.520826138336515
Merged-chr12-40245673-4	chr12	40245587	40245787	+	927.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22323.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	4.89606262333942	4.87767590104109	4.7900350849848	4.54644636493029	4.55027930383323	4.63318126521624	5.32248430289113	4.54244634281278	0.0587872546934012	0.879486375338174	0.954865172516716
Merged-chr11-117878999-4	chr11	117878914	117879114	+	976.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5488.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	5.65504672230795	5.01699028027198	5.16058858899815	5.58283007463908	4.82373545637235	5.30330152594028	5.43186114956621	5.3444873234284	-0.273557506940918	0.421692491885932	0.714131161968168
Merged-chr13-105051626-1	chr13	105051526	105051726	+	1000.0	f0_balb.idr	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	3304.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	4.08314568690843	3.50223898748128	3.63786386875209	4.06045684297031	3.43525907893856	3.45417945273454	3.32845676981284	3.58130722877959	-1.27993207478984	0.0156928280772476	0.108236415669613
Merged-chr14-70175444-4	chr14	70175345	70175545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145978, intron 1 of 9)	intron (NM_145978, intron 1 of 9)	1370.0	NM_001253736	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	7.84047437818294	7.71553964796861	7.61962624071643	7.73917718965227	7.65733880336756	7.54821762838405	7.76717170388836	7.58810681557849	-0.114213200052974	0.496072573079464	0.766058830608187
Merged-chr3-30995831-4	chr3	30995755	30995955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008857)	promoter-TSS (NM_008857)	84.0	NM_008857	18759.0	Mm.291554	NM_008857	ENSMUSG00000037643	Prkci	2310021H13Rik|AI427505|PKClambda|Pkci|Pkcl|Prkcl|aPKClambda|mKIAA4165	protein kinase C, iota	protein-coding	6.55376075505408	6.83820104441626	7.39132532498932	7.10707714143831	6.37501362428944	6.49209468729322	6.82092831965313	6.60016921646282	-0.613981570905977	0.013936160147694	0.0996867588262076
Merged-chr14-118831739-3	chr14	118831661	118831861	+	905.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160097, intron 1 of 3)	intron (NM_001160097, intron 1 of 3)	-23189.0	NM_021386	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	3.0750947705333	3.47288004615528	3.8384911330575	3.70326934930685	2.5525336517745	2.82117396095821	2.70107695622947	2.70660098013196	-5.69474798152153	3.21313677038416e-07	1.23826671455969e-05
Merged-chr17-46782609-4	chr17	46782476	46782676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025433)	promoter-TSS (NM_025433)	80.0	NM_025433	66229.0	Mm.218533	NM_025433	ENSMUSG00000063888	Rpl7l1	1500016H10Rik	ribosomal protein L7-like 1	protein-coding	5.62756719547721	5.84779705991984	5.4444690201276	5.10802521563061	5.28020297098666	5.30367041002653	5.3299084350426	5.54900583459171	-0.271735229037249	0.390076677810881	0.690245822100553
Merged-chr17-8816832-4	chr17	8816759	8816959	+	847.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	15114.0	NM_011866	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	4.2311337198586	3.63897066285279	3.880124286862	4.13670679144322	4.22344507249992	3.6516970226105	3.75988959635066	3.77254575739103	-0.303962034828761	0.542197434093881	0.793691778334718
Merged-chr6-5411106-4	chr6	5410971	5411171	+	932.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355662, intron 2 of 4)	intron (NM_001355662, intron 2 of 4)	20661.0	NM_001355662	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	4.58421145757996	4.31602610707254	4.4323816744111	4.42802718240536	4.27154455205113	4.23691602209473	4.28558800567122	4.25635552699914	-0.425052478204799	0.261105093110482	0.573005209121725
Merged-chr5-66087207-4	chr5	66087110	66087310	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	10969.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.89808660617837	5.59907492856731	5.18806286224411	5.85241749744113	6.09296773088972	5.95963523240056	5.73177130785853	5.62926499791831	0.323800106247476	0.274559709419074	0.586358723915758
Merged-chr16-52044253-2	chr16	52044153	52044353	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 2 of 17)	intron (NM_001033238, intron 2 of 17)	12704.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	2.99759582866464	3.28453926284994	3.05610886820921	2.59721213540546	3.12877225464321	2.84374704161658	2.65511473790892	2.87201384101574	-0.495690173293764	0.475078455098954	0.75207635957317
Merged-chr3-136165459-2	chr3	136165356	136165556	+	590.75	f0_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 7 of 16)	intron (NM_001033350, intron 7 of 16)	160610.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	3.55501002195254	3.36123101555138	3.2553846673862	3.37757314945317	2.83257943836726	2.81289153937219	2.99829216306015	3.30871196248448	-1.58987748450586	0.0119899019308897	0.089891429275205
Merged-chr13-91599796-3	chr13	91599684	91599884	+	962.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 4 of 15)	MTC|LTR|ERVL-MaLR	138687.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	4.13027652753001	3.8318784248427	4.5206113986545	4.45772576684918	3.76405521672468	3.82409487402523	4.24116859816893	3.82127049949433	-0.901474256279052	0.0575048277884216	0.251661244015574
Merged-chr1-180835384-4	chr1	180835292	180835492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15759.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	6.64216686180878	6.74563456825068	6.68942402221394	6.97433929216354	6.89043292275017	6.67109938808556	6.79734894828194	6.50749639143277	-0.0734470236370226	0.733417807372795	0.894469888645001
Merged-chr15-80707210-4	chr15	80707114	80707314	+	957.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4099.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	3.89155616682878	4.25761460888803	3.71755739740853	4.2825928744986	4.43751139463768	4.06782501328818	4.16532095024427	3.88995384140368	0.233515313677004	0.617549835408405	0.835628419008512
Merged-chr17-7400114-1	chr17	7400014	7400214	+	583.0	f1_c57bl6.idr	Intergenic	RMER12B|LTR|ERVK	-14809.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	3.02179178521446	2.73780395620441	3.30929948712598	2.51496374252108	3.21546632492169	3.478825496128	3.01091302520611	3.02060627808603	1.03826466473628	0.129181187201283	0.399990765782152
Merged-chr6-53064305-4	chr6	53064196	53064396	+	840.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	ORR1E|LTR|ERVL-MaLR	4328.0	NM_173406	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	4.17943582405296	4.38544461599279	4.22744104418199	4.67562993368602	4.14752535112636	3.97573140282185	4.49603159934057	4.31459223609625	-0.367469903754055	0.385929248237955	0.687298864016961
Merged-chr7-112233602-1	chr7	112233502	112233702	+	860.0	f0_balb.idr	intron (NM_001193305, intron 1 of 25)	intron (NM_001193305, intron 1 of 25)	7766.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	3.15902057695067	2.88114561989022	3.35622574654077	3.54685821481955	2.43392614281686	2.67414203074616	2.71352348774919	2.56460497100153	-4.07847050952637	3.15362894283762e-05	0.00075758405171191
Merged-chr7-30194051-4	chr7	30193934	30194134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009795, exon 2 of 11)	exon (NM_009795, exon 2 of 11)	1119.0	NM_009795	12336.0	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|Cdps|Css1|D7Ertd146e	calpain, small subunit 1	protein-coding	5.33996229741608	6.100059001341	5.95169772355665	5.41469272169634	5.7134065543956	5.79239337366112	5.8566903838602	5.96830892284855	0.15990235839722	0.594392621921308	0.823411261518897
Merged-chr13-74040158-3	chr13	74040062	74040262	+	962.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028959, exon 11 of 12)	exon (NM_028959, exon 11 of 12)	22123.0	NM_028959	74470.0	Mm.73234	NM_028959	ENSMUSG00000021572	Cep72	2610029E11Rik|4933440J22Rik	centrosomal protein 72	protein-coding	4.4080657858352	4.25507851499476	4.19493541867326	4.54762057494276	4.04097878191877	4.22302336868471	4.03073127131117	4.28216052001827	-0.566662567941812	0.161760316164359	0.450749199196011
Merged-chr2-34944345-2	chr2	34944245	34944445	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009421, intron 10 of 10)	intron (NM_009421, intron 10 of 10)	17427.0	NM_009421	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	3.30374986225967	3.33433202021532	3.24483108853437	3.24520813270781	3.32700933436024	3.52989809561108	3.23338361077445	3.41336032153163	0.347531425805686	0.501301317044836	0.769160536438844
Merged-chr17-28432232-4	chr17	28432145	28432345	+	982.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 3 of 10)	MER90a|LTR|ERV1	53904.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	4.93755389871529	4.95544063704087	5.01565167734503	5.794514859719	5.42692100294817	5.2304125416748	5.4286817327449	5.47866845957614	0.239001827021082	0.509646851536359	0.774132584192743
Merged-chr7-25649938-4	chr7	25649820	25650020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007533, intron 1 of 8)	intron (NM_007533, intron 1 of 8)	8841.0	NM_007533	12039.0	Mm.25848	NM_007533	ENSMUSG00000060376	Bckdha	-	branched chain ketoacid dehydrogenase E1, alpha polypeptide	protein-coding	6.22799656240927	6.26866122070806	6.49557058871342	6.73011259187246	5.96286771296104	5.47132287228516	5.56363730661823	5.8617934808082	-1.11205924470998	4.50260045829781e-05	0.00103284111511821
Merged-chr9-65201671-4	chr9	65201580	65201780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13010.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	5.59034039268204	6.40305994650917	6.10324966080306	5.84160569970469	5.83207112570322	5.74090595783431	5.74826269545282	5.49854427314853	-0.489229910876079	0.0926476298881474	0.332957133239551
Merged-chr14-27355804-3	chr14	27355700	27355900	+	642.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-5589.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	2.79961659414504	2.70576386564698	2.86089014310532	2.47324198222588	2.99893853889289	2.97058073654078	2.7267701898837	2.52293484450983	0.510018870119356	0.455503762257803	0.738986695850575
Merged-chr11-3932072-4	chr11	3931956	3932156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015749)	promoter-TSS (NM_015749)	-12.0	NM_015749	21452.0	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	6.51871138891149	6.43075590088816	6.63213558912777	6.93991739559042	6.59904972036121	6.39683889297343	6.71487183482869	6.62740783376947	-0.10224201513537	0.656293963219253	0.856578187032112
Merged-chr19-5117997-2	chr19	5117897	5118097	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045528, intron 1 of 15)	CpG	411.0	NR_045528	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	4.27217170373989	4.21387142583954	4.81786774880967	4.06077328675213	4.59799603091342	4.20351205052592	4.16065496872404	4.07482865991702	-0.187766757392433	0.675676325940668	0.866900613183491
Merged-chr2-84820097-3	chr2	84819997	84820197	+	944.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024230, intron 1 of 7)	intron (NM_024230, intron 1 of 7)	2555.0	NM_024230	68678.0	Mm.33452	NM_024230	ENSMUSG00000027077	Smtnl1	1110030K22Rik|CHASM	smoothelin-like 1	protein-coding	3.81748148448977	4.04969152281111	4.28853643958173	3.84840385581423	2.9340950863671	3.27386738691745	3.14623611638129	3.43278858803243	-3.06164144703386	2.00421122296868e-06	6.56199404966366e-05
Merged-chr10-84549301-4	chr10	84549203	84549403	+	954.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040658, exon 3 of 4)	non-coding (NR_040658, exon 3 of 4)	4035.0	NR_040658	442847.0	Mm.128292	NR_040658	ENSMUSG00000097076	Platr7	C330046G13Rik	pluripotency associated transcript 7	ncRNA	5.32640185622211	5.05202398833388	5.4572827952666	5.63216755904334	4.61582308931115	4.54210409106448	4.84721620936768	5.08297301237109	-1.17690023231165	0.000695553329514098	0.0100853107438346
Merged-chr2-142858636-2	chr2	142858536	142858736	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 3 of 26)	intron (NM_001355123, intron 3 of 26)	42828.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	3.19798586352877	3.36723768762578	3.38585776540258	4.09741222792421	3.16809035601773	3.37703460577326	3.42944306269398	3.49553063414522	-0.68593254695704	0.256749747276472	0.568480006866985
Merged-chr5-72188308-4	chr5	72188208	72188408	+	902.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15021.0	NR_003966	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	4.49825600245314	4.76543038499705	4.99372245152868	5.0582570430809	4.33039724912044	4.48395170604753	4.87150867194281	5.13847358144026	-0.233416578400281	0.559665506003479	0.803980525375318
Merged-chr5-117120012-4	chr5	117119904	117120104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199685)	promoter-TSS (NM_001199685)	-125.0	NM_001199685	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	8.36962921503243	8.51351086197853	8.41278232704242	8.13236818970466	8.36227205500538	8.55409864191494	8.37874780937716	8.02574089664212	-0.0203749475852239	0.910426857736483	0.966693616964394
Merged-chr6-38808449-3	chr6	38808350	38808550	+	722.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	28861.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	3.56939278705798	3.48346403354852	3.45863739887109	3.84890312758107	3.15723786881414	3.38527410713077	3.60703171260632	3.80936289141804	-0.321297854844079	0.559521220096937	0.803903048490742
Merged-chr7-135768776-4	chr7	135768669	135768869	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52390.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	5.1740670484632	5.25130577790718	5.10906160143452	4.72123442893701	5.37161433741838	5.38062960970016	5.53089402896844	4.92463041993346	0.480769083249072	0.1467674975019	0.427287975160037
Merged-chr17-57290385-5	chr17	57290293	57290493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	11293.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	5.44726175915996	5.46104584625109	5.86242754115851	5.4510897577697	5.58011105442449	5.70594505023769	5.20290475242557	5.3548436589641	-0.140910737710909	0.632550056889732	0.843973166742038
Merged-chr16-35765538-4	chr16	35765440	35765640	+	922.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	MER57-int|LTR|ERV1	3816.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	6.39821737868848	6.05751201162865	6.73365151528646	6.81761066476251	5.28030956312659	4.93209977672788	5.04013555337234	5.01843263200267	-2.4128685426867	2.15933271556324e-14	3.19540838588515e-12
Merged-chr11-82889927-2	chr11	82889827	82890027	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277941, intron 2 of 8)	intron (NM_001277941, intron 2 of 8)	697.0	NR_102719	19364.0	Mm.9286	NM_011235	ENSMUSG00000018841	Rad51d	R51H3|Rad51l3|TRAD|Trad-d5	RAD51 paralog D	protein-coding	3.27907725510641	3.81561915210073	3.45128034078117	3.18165150327885	3.38920482318825	3.12001569751776	3.32677268658587	3.44931708830696	-0.427635961543635	0.452641142578673	0.736937759721328
Merged-chr9-118512852-3	chr9	118512743	118512943	+	704.383362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018748, intron 1 of 23)	intron (NM_018748, intron 1 of 23)	6525.0	NM_018748	54214.0	Mm.10409	NM_018748	ENSMUSG00000038708	Golga4	AI225887|AU019508|Olp-1	golgi autoantigen, golgin subfamily a, 4	protein-coding	3.61021490178467	3.60996589960404	3.43949785369601	3.39935635463532	3.53560641249378	3.92946861907817	3.69756005661222	3.55414531443179	0.544245943324886	0.263821234700563	0.575887256647185
Merged-chr19-18631403-4	chr19	18631307	18631507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145497)	promoter-TSS (NM_145497)	406.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	6.36283372278422	6.3619092947491	6.21275570506686	6.54755164236055	6.31421052473307	6.2189217650635	6.41700928146464	6.35941072339764	-0.0914651138012208	0.681742853278689	0.869606368114473
Merged-chr7-75786194-4	chr7	75786102	75786302	+	827.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-62136.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	4.14240477297965	4.00712854968544	3.96270616152705	4.03483979570829	4.02411994701122	3.92829544698787	3.8972136713435	3.69267779723226	-0.386279533266093	0.373834801799935	0.677216414469042
Merged-chr3-98046579-4	chr3	98046490	98046690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	MIR3|SINE|MIR	33052.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	7.27058228421334	7.29740470609374	7.01316902522026	7.40925875280107	7.09588759535303	7.13766189975099	7.54359857492123	7.37844406466692	0.0458879438552177	0.82190403514162	0.93193005280262
Merged-chr2-79742155-4	chr2	79742057	79742257	+	996.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110980, intron 2 of 2)	intron (NR_110980, intron 2 of 2)	34377.0	NM_001290743	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	6.11706282166574	5.28197287330697	5.90759076315232	6.20632283640882	5.82908407931682	5.91346290624257	6.08672041600187	6.11375607145253	0.0840403423366647	0.778565366790542	0.913781420202775
Merged-chr1-155083581-4	chr1	155083467	155083667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151545)	promoter-TSS (NR_151545)	-303.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	8.03597438698192	8.07105005546675	7.96118787171101	7.78545638616378	8.21112649177083	8.34248779623363	8.38210387155751	8.24146479530468	0.427176000742349	0.00839563576578966	0.0694310396390313
Merged-chr12-84337461-4	chr12	84337374	84337574	+	792.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144833, intron 8 of 11)	intron (NM_144833, intron 8 of 11)	20615.0	NM_001252583	52708.0	Mm.255150	NM_144833	ENSMUSG00000042472	Zfp410	Apa1|D12Ertd748e|Znf410	zinc finger protein 410	protein-coding	3.74492027414938	3.87074849703755	3.8497887868082	3.94246613063362	3.9878422729729	3.86342847612957	3.92945539729489	3.74341062908987	0.0783130449864065	0.858659829213502	0.946576014812915
Merged-chr11-51584745-4	chr11	51584666	51584866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028398)	promoter-TSS (NM_028398)	9.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	7.8668430452126	7.92984775314235	7.23194786059835	7.75166783654276	7.9157686510609	7.85886061865825	7.793543030889	7.7494687106202	0.138757993660774	0.485944308722165	0.759714246975224
Merged-chr2-157153429-4	chr2	157153343	157153543	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011249, intron 19 of 21)	intron (NM_011249, intron 19 of 21)	-18221.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	5.38121233212092	5.56205033321068	5.46275001174023	4.97271306507279	5.17022130025515	5.17371500724471	5.11291528514574	5.10041524513421	-0.381032122714342	0.231260238008098	0.54072900864524
Merged-chr11-53774261-4	chr11	53774172	53774372	+	855.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159393, intron 6 of 9)	intron (NM_001159393, intron 6 of 9)	3799.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	3.87673150766243	3.81954943275876	3.46711187682927	2.77807278153592	3.89014240299979	3.75821733786224	3.39292262517352	3.46522788982002	0.221845324788671	0.731905209208469	0.893842682027583
Merged-chr2-91237713-6	chr2	91237657	91237857	+	888.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028119)	promoter-TSS (NM_028119)	611.0	NR_015464	606735.0	Mm.246808	NR_015464	ENSMUSG00000097868	A330069E16Rik	-	RIKEN cDNA A330069E16 gene	ncRNA	3.00757887497259	3.27472846896558	2.9386484853298	2.95442650574902	3.51286586936012	3.30883907644721	3.24097904523363	3.25199642218024	1.10418686503392	0.0485679265558408	0.227495159536601
Merged-chr11-115643521-4	chr11	115643442	115643642	+	834.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008163)	TTS (NM_008163)	-15247.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	4.0117298441138	4.22465176060571	4.25338310394419	3.80167641068052	4.25271931795298	4.58678667755773	4.1898519405495	4.25069027769409	0.638039926123532	0.128161742246411	0.398412999816789
Merged-chr1-192932040-4	chr1	192931940	192932140	+	986.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301370, intron 5 of 8)	intron (NM_001301370, intron 5 of 8)	-76288.0	NM_198247	214791.0	Mm.22806	NM_198247	ENSMUSG00000016262	Sertad4	4833404A09|C130018M11Rik	SERTA domain containing 4	protein-coding	5.15632376269026	4.95591908266652	4.84694730243461	5.50316938762855	5.71844265204931	5.60911604660297	5.51387461953566	5.5380984263463	0.758611891548239	0.0183500747096952	0.120916493960507
Merged-chr2-18202050-1	chr2	18201950	18202150	+	561.0	f0_balb.idr	intron (NM_010804, intron 16 of 22)	intron (NM_010804, intron 16 of 22)	137465.0	NM_001252561	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	3.08341513810796	3.08502185719604	3.30856012296837	3.08248830637709	3.01796935637611	3.25545242673837	3.29444892996817	2.8116118432524	-0.132173136641642	0.823622647298735	0.932356535727038
Merged-chr4-116221385-5	chr4	116221367	116221567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355584)	promoter-TSS (NM_001355584)	51.0	NM_001355585	18710.0	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55|p55pik	phosphoinositide-3-kinase regulatory subunit 3	protein-coding	6.1455721959282	6.14396648118902	6.36836104005036	5.81450335699208	6.17799037608347	6.40000755540311	6.05342876767444	6.2205390089021	0.155498745321786	0.53518979116994	0.789648104016425
Merged-chr8-108820760-3	chr8	108820652	108820852	+	990.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	106108.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	4.26178164914759	4.48319071436193	3.98908800713626	4.27840433602426	3.94318223594845	3.88989211795293	4.20148033236143	3.57485707237669	-0.909148948910388	0.0493038039660379	0.229734419370164
Merged-chr2-165792922-3	chr2	165792822	165793022	+	828.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001252585, exon 19 of 22)	exon (NM_001252585, exon 19 of 22)	65251.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	3.13490552006895	3.1821013070383	3.30416052693039	3.30481633924528	3.10076348247688	3.30444556663584	3.06374191444992	3.07233755285481	-0.39655815479315	0.474415620638545	0.75165589989079
Merged-chr12-55642546-4	chr12	55642449	55642649	+	995.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003719, intron 36 of 39)	intron (NM_001003719, intron 36 of 39)	43632.0	NM_020287	56856.0	Mm.114886	NM_020287	ENSMUSG00000045440	Insm2	Mlt1	insulinoma-associated 2	protein-coding	4.90130165654387	5.09438245733378	5.07764128371254	5.19030747043858	5.3615178079054	4.87840800331682	5.1766340951499	4.73912065316006	-0.0022788798861954	0.994577782211458	0.998093408906001
Merged-chr4-107084416-3	chr4	107084310	107084510	+	829.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175471, exon 9 of 9)	3' UTR (NM_175471, exon 9 of 9)	-12481.0	NM_172873	242603.0	Mm.257231	NM_172873	ENSMUSG00000047636	Cdcp2	D030010E02Rik	CUB domain containing protein 2	protein-coding	3.12755530050507	3.39101302556193	3.06995677435468	3.13601188924458	2.5743509153274	2.84221695948036	3.22269478525671	2.80726665017898	-1.321624687781	0.0543737990612079	0.243474625275397
Merged-chr12-108795290-4	chr12	108795153	108795353	+	928.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009537, intron 1 of 4)	intron (NM_009537, intron 1 of 4)	1942.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	4.27331359772178	3.93829084568483	3.8004052675747	3.95911441162321	4.1142028812849	3.9211135885593	4.04138636545116	4.23110952724719	0.222280064783683	0.60462203756793	0.828509474255204
Merged-chr19-42129740-2	chr19	42129640	42129840	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027106)	promoter-TSS (NM_027106)	-747.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	4.82032718513608	4.29487867985327	4.10167496723169	4.21682213166632	4.01469566908434	4.37424253031048	4.03313135539189	4.19706846601672	-0.55022418939778	0.206803561209801	0.510809505458117
Merged-chr8-106151252-4	chr8	106151147	106151347	+	894.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 1 of 5)	intron (NM_001357319, intron 1 of 5)	893.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	3.85240945941103	3.83412161221598	3.80095145506438	3.55222654849956	4.16200896003527	3.80972844605394	3.83694818244197	4.12446640826132	0.702795209437825	0.119517339623793	0.382544521554412
Merged-chr17-3205133-3	chr17	3205034	3205234	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90162.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	4.20141887329837	4.2863328557743	4.55715381890361	4.76690815270886	4.00370806644893	4.076236828246	3.82255061067724	3.77370713000045	-1.4373602493151	0.00127109184925964	0.0163018102231445
Merged-chr9-75050180-2	chr9	75050080	75050280	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357880, intron 2 of 3)	intron (NM_001357880, intron 2 of 3)	12448.0	NM_021548	59046.0	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	3.315189272975	3.45927085987482	3.37061302297697	3.10683128716628	2.97320633063279	3.24715502459212	3.35681654316113	3.31381539339373	-0.324534886689549	0.56477133964717	0.806944325796203
Merged-chr17-44101067-4	chr17	44100954	44101154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357997, intron 3 of 3)	intron (NM_001357997, intron 3 of 3)	4754.0	NM_199016	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	6.82462957619201	7.10394659676768	6.2442491181737	6.24134001022788	7.56429769431379	7.41969313256831	7.11230958835766	6.70248421254188	0.816104151176384	0.00469632424758377	0.0453629615441397
Merged-chr1-154006258-4	chr1	154006136	154006336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	106307.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	5.83846155774732	5.78493780320121	5.58202864922145	5.86985574455655	5.9070436796619	5.84094596717745	5.76264482868235	5.96778146160484	0.146789861287137	0.557140961475379	0.802394360861461
Merged-chr15-76765960-4	chr15	76765855	76766055	+	807.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	-42110.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	3.89405667016607	3.87926135216567	3.53925326018131	3.39087691670001	3.87985631813482	3.24830060260624	3.46696815143505	3.93565188977698	-0.0686643226128489	0.902105269382371	0.963679833251306
Merged-chr9-95858526-4	chr9	95858398	95858598	+	877.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073361)	promoter-TSS (NR_073361)	-616.0	NM_001271569	73410.0	Mm.443314	NM_028533	ENSMUSG00000096655	1700065D16Rik	-	RIKEN cDNA 1700065D16 gene	protein-coding	4.22762962261797	4.17789796685366	4.31898334287543	4.02615604400407	4.51113290802755	4.72577340790359	4.16246127752492	4.27176278172273	0.616333809083124	0.1236927073491	0.390124211999361
Merged-chr16-96082531-4	chr16	96082443	96082643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176928)	promoter-TSS (NM_176928)	-115.0	NM_145125	93871.0	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	7.10759051957374	7.35773549439319	7.15738607519832	7.6124039880338	7.34242944666229	7.56245047200004	7.60702916735793	7.33997333539478	0.166956850370835	0.413810114465222	0.708758605744262
Merged-chr17-13659361-4	chr17	13659315	13659515	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-101126.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	4.4400558354924	4.76701560926158	5.19121958221711	4.6117006415529	4.71897311365105	4.42386032832781	4.42113419801783	4.72772531213803	-0.402185490405275	0.300544581385102	0.612477626586326
Merged-chr4-137609443-3	chr4	137609348	137609548	+	907.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355588, intron 6 of 26)	intron (NM_001355588, intron 6 of 26)	15276.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	3.363082265379	3.29811746808685	3.67130627962008	3.51981403681942	3.18590964402961	3.35432083376679	3.40697053394866	3.47265072523387	-0.412244561652108	0.434286287425333	0.723596995614414
Merged-chr18-24227847-4	chr18	24227746	24227946	+	712.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361200, intron 1 of 12)	ORR1B1-int|LTR|ERVL-MaLR	21852.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	4.12835436236296	4.10535562867008	3.71611868737365	3.68647952533124	4.26300693137524	4.29916955781538	3.64129609508261	4.1697705604844	0.534002369921231	0.261532352311663	0.573476890516299
Merged-chr4-6388694-4	chr4	6388591	6388791	+	913.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 6 of 8)	intron (NM_001098227, intron 6 of 8)	23011.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	3.89914151811346	3.94782156919428	4.15376815364467	4.03191763142756	4.5061001601412	4.45368669091669	4.18107486887074	4.28372317033509	0.897881531488077	0.0250585939974145	0.148664297928677
Merged-chr1-40081231-4	chr1	40081123	40081323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037980, intron 3 of 3)	MTC|LTR|ERVL-MaLR	-3491.0	NM_010555	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	5.71441596640415	5.53727938342889	5.66495960816006	5.98379131742308	5.77693805130251	5.58702930972572	5.75809514283702	5.5253995547647	-0.134552344337995	0.622683427429613	0.838617548681613
Merged-chr6-145802193-1	chr6	145802093	145802293	+	757.75	f0_balb.idr	Intergenic	Intergenic	-6190.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	3.56669477269348	3.38708393021437	3.85206830931773	3.59000560766517	3.37244685271165	3.57148020302007	3.3846224388876	3.56518063364645	-0.44065653469852	0.385340343939472	0.686726426145025
Merged-chr11-69997337-4	chr11	69997241	69997441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291127)	promoter-TSS (NM_001291127)	-121.0	NM_001291127	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	7.59243762433649	7.71502933941984	7.16711739322432	7.34650656517093	7.50538112154795	7.70002598164741	7.47668813247371	7.59708641858026	0.13208326030826	0.498672067183552	0.767768698826212
Merged-chr11-113565802-4	chr11	113565695	113565895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166503)	promoter-TSS (NM_001166503)	20.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	6.52176420762291	6.22806966168752	6.05459829974868	6.19853144337259	6.49363733280262	6.77310934312447	6.28720894269333	6.05027852887983	0.253805462659118	0.320609938266183	0.632430335149585
Merged-chr10-67271863-4	chr10	67271763	67271963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036293, intron 2 of 3)	intron (NM_001036293, intron 2 of 3)	13418.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	6.40405023673278	6.32423934543027	6.61034736046438	6.81636117614037	6.01953279789457	5.83926221890823	6.18890758637752	6.33009544639795	-0.68915252481397	0.00574355533681902	0.0526288008907622
Merged-chr16-62786792-4	chr16	62786684	62786884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178925)	promoter-TSS (NM_178925)	-68.0	NM_178925	106338.0	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	8.57445662117148	8.73271792453327	8.10127926142259	8.65500283150337	8.68181313615294	8.53597517835784	8.55936262790038	8.44849672128944	0.0229075101626225	0.900191811612042	0.963037675111283
Merged-chr2-44504489-4	chr2	44504393	44504593	+	872.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	357129.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	4.35526959061522	4.05286661338366	4.17493765190619	4.30897871854061	4.16749383954013	4.14546900197585	4.45547929067998	4.68447823856029	0.352118528344789	0.389131355170845	0.689374802932542
Merged-chr17-69223653-4	chr17	69223553	69223753	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	53553.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	5.1373057057608	4.96122836084199	5.0742762966608	5.39724343840316	4.9362277641084	4.87504921025507	5.01665477497286	4.9686057415664	-0.425701402372613	0.183332285862108	0.480245118783694
Merged-chr19-6299678-4	chr19	6299568	6299768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010119, exon 5 of 5)	3' UTR (NM_010119, exon 5 of 5)	-6789.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	7.78225389505077	8.16533313955457	8.26314775562549	7.45982447383336	7.88633682555387	8.02286395672909	8.01413903599982	7.46592288288401	-0.109158813284895	0.639055697319797	0.847417964618581
Merged-chr15-94688664-4	chr15	94688572	94688772	+	999.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178789, intron 2 of 7)	intron (NM_178789, intron 2 of 7)	59487.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	4.84349628507875	4.36043997396357	4.95368480372467	4.93844226119414	4.97417847128113	4.94312330649674	5.41224292391832	5.11384743126756	0.627943389259695	0.0762687915918348	0.298263009064823
Merged-chr2-74578976-4	chr2	74578882	74579082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027133)	promoter-TSS (NM_027133)	-34.0	NM_027133	69605.0	Mm.156113	NM_027133	ENSMUSG00000009207	Lnpk	2310011O18Rik|4921514L11Rik|9530051D01Rik|AI666268|Lnp|Lnpk1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding	7.67200017018382	7.75127240316101	8.02086535339321	8.30882466385064	7.73254233919149	7.81577901189864	8.19376327541371	8.03512547414473	-0.0232891326371515	0.912234621067976	0.967199155316195
Merged-chr5-137871795-4	chr5	137871704	137871904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024932)	promoter-TSS (NM_001024932)	-46.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	5.65009760597052	5.67189506389218	5.47745981347222	5.02213293662047	5.05478781155546	5.35539980486877	5.18627657761224	5.20833229124057	-0.480504385495452	0.137868051230669	0.413018098423727
Merged-chr14-26640043-4	chr14	26639918	26640118	+	744.837524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	1884.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	3.57294741856692	3.00645191620231	3.01779703387016	3.2166063257621	3.3735142545809	3.64100182632917	3.78495647855168	3.57129359578518	1.27595960379979	0.0243992765347535	0.146003875953528
Merged-chr19-61152315-3	chr19	61152201	61152401	+	624.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR50A|LTR|ERVK	-11461.0	NR_131954	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	3.33904092709374	3.42767562860212	3.2758299688634	2.92986940123316	3.92223790433984	3.57623116435044	3.55222276506698	3.66566904983347	1.53356143077822	0.00442529493354884	0.0433947218824151
Merged-chr12-111691426-4	chr12	111691325	111691525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13320.0	NM_177374	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	5.62071538145627	5.42897397672174	5.85723523272832	5.92414447537759	5.21051057699724	5.22592926301445	5.82720086677484	5.64333891395285	-0.39143771899602	0.20452285494879	0.507782437802491
Merged-chr10-96435330-4	chr10	96435215	96435415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-181686.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	5.82852323185013	5.8865645578939	5.73599035338842	5.56405633500675	5.7950603619615	5.48631431408253	5.46874255790989	5.70742753169509	-0.194428529305182	0.473496651682575	0.751223284962802
Merged-chr7-84272470-4	chr7	84272385	84272585	+	976.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007488, intron 12 of 18)	intron (NM_007488, intron 12 of 18)	-120592.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	5.55999793515011	5.1095571046977	5.5609810633701	5.32758973788651	6.64796154255995	6.47661343543358	6.74082691794042	6.67128786480616	1.9444071609703	1.52756468120576e-15	2.68470435663074e-13
Merged-chr18-54839209-4	chr18	54839066	54839266	+	973.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	151014.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	5.74635924764605	5.01677954282698	5.48817513484229	5.59525425517823	4.75494922951678	5.58078523147669	5.26363718789719	4.89658184405556	-0.602407296925112	0.0928884875246461	0.333520462748022
Merged-chr15-57924261-4	chr15	57924170	57924370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356310, intron 3 of 19)	L1M2|LINE|L1	12071.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	6.41362678992385	6.28813756296409	6.66306528951316	6.98522209709374	6.36474008427139	6.19069678608187	6.94447301893435	7.02065960822299	0.0728485760668033	0.799547601475114	0.922592992759239
Merged-chr18-5097446-4	chr18	5097332	5097532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153153, exon 24 of 35)	exon (NM_153153, exon 24 of 35)	50843.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	6.72202833172908	7.36007562633583	7.44632761790379	7.37194333416392	6.0840249777013	5.72433565803014	6.02739057479801	5.75837160349644	-1.95333606033788	3.80576199452261e-14	5.38549369797465e-12
Merged-chr6-131264372-4	chr6	131264274	131264474	+	924.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17012.0	NM_008462	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	4.12759117998039	3.96603576311019	4.1782831587112	4.3210378825795	4.00856045286842	4.40241653179545	4.49992505376116	4.90339664422604	0.767354570816871	0.0815398810738363	0.309823690543671
Merged-chr13-5803801-4	chr13	5803704	5803904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54288.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	7.17547579769188	7.00931068379949	7.02699309378913	6.93773661695741	7.00723072734044	6.99134854646862	6.90319340228596	6.98480651639834	-0.0814698911680045	0.665008471098218	0.861182220353476
Merged-chr15-75678440-4	chr15	75678335	75678535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028404, intron 1 of 13)	intron (NM_028404, intron 1 of 13)	365.0	NM_001355589	72960.0	Mm.182401	NM_028404	ENSMUSG00000000934	Top1mt	2900052H09Rik	DNA topoisomerase 1, mitochondrial	protein-coding	5.81427000787544	6.2009308978104	5.55078736620674	5.51726936790088	5.96669389022517	6.01421570381505	6.15317076303932	5.32343539050536	0.169467513715042	0.592070678417137	0.821919268747471
Merged-chr7-63936479-4	chr7	63936351	63936551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	2464.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	6.02696786950461	6.12716885972124	6.63071345214498	6.01234074794795	6.24100513884502	6.62393734340744	6.24286805061243	6.11145936358577	0.152052932470457	0.564824482533852	0.806994155689136
Merged-chr14-48896410-1	chr14	48896310	48896510	+	1000.0	f0_balb.idr	Intergenic	LTR33A_|LTR|ERVL	17537.0	NR_033783	66770.0	Mm.136954	NR_033783	ENSMUSG00000115008	4933429O19Rik	1700031B11Rik	RIKEN cDNA 4933429O19 gene	ncRNA	4.64807664553765	4.66591859760029	4.85847052390386	4.81926863205534	3.17690481510446	3.51350888346407	3.52677475569623	3.38359630046833	-5.12376860239371	8.50095474033647e-11	6.58421607684885e-09
Merged-chr4-136505968-4	chr4	136505868	136506068	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024452, intron 1 of 4)	MTC|LTR|ERVL-MaLR	36207.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	5.10555677137537	5.17827572513074	5.00906549463832	5.28004809180472	4.77717583923349	4.70557238182797	4.80550624362842	5.00567029443623	-0.654211700543667	0.0408643425619072	0.204367281251642
Merged-chr6-34177087-4	chr6	34176984	34177184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021435)	promoter-TSS (NM_021435)	-30.0	NM_021435	58246.0	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	8.29361652759091	8.39175478413998	8.24966931183397	8.39868828477291	8.21982979550907	8.06924180822941	8.31561134079352	8.01732507632676	-0.2226250118565	0.162151569760473	0.45122118081163
Merged-chr12-80113818-3	chr12	80113709	80113909	+	925.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007564)	promoter-TSS (NM_007564)	-796.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	4.60784554232391	4.1264644046043	4.35005534354422	4.05537307667645	3.99307317214632	4.09547481276311	4.10863443516649	4.38756394819433	-0.350039115948726	0.414624272526066	0.70912924922228
Merged-chr10-108300998-4	chr10	108300891	108301091	+	785.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31198.0	NM_054056	114774.0	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	4.18497663737983	4.39395162115848	3.7896920857165	4.57790636215994	3.86115739190354	4.6978734906586	4.46870254934239	4.52518113596986	0.334555421790346	0.488677954187636	0.761377570765248
Merged-chr5-135015677-3	chr5	135015576	135015776	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2519.0	NR_026688	69812.0	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	3.59254797333391	3.93929246147976	3.28342425591897	3.62726200043901	3.85068357229617	3.53066085625082	3.52341265778594	3.84075899444237	0.202630432081119	0.69682763137665	0.877447838621518
Merged-chr4-123016582-4	chr4	123016487	123016687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025873)	promoter-TSS (NM_025873)	-6.0	NM_025873	66966.0	Mm.235030	NM_025873	ENSMUSG00000028653	Trit1	2310075G14Rik|AI314189|AI314635|AV099619|IPPT|IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding	6.58687348471161	6.55123935118148	6.10126643100754	6.48838456843585	7.26032269976062	6.94493491064731	7.03077179371738	6.3726811352802	0.711613641816575	0.00565610711413404	0.0520486164546796
Merged-chr2-67378768-1	chr2	67378668	67378868	+	601.5	f0_balb.idr	Intergenic	Intergenic	-67234.0	NM_001083919	241431.0	Mm.261043	NM_001024618	ENSMUSG00000027022	Xirp2	2310003D02Rik|2310008C07Rik|A530024P18Rik|AI452089|Cmya3|Gm352|Xin2	xin actin-binding repeat containing 2	protein-coding	3.18039580838156	3.2461013582707	3.23538804784866	3.39857818913654	2.77139733285773	3.04430782837024	2.9917415038242	2.86599366445048	-1.55570543295667	0.0112984916126764	0.0860675657639872
Merged-chr1-118472710-4	chr1	118472628	118472828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 8 of 39)	intron (NM_001359330, intron 8 of 39)	-13463.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	5.2521399118738	5.63679232517658	5.94040470874373	6.10586507522556	5.69133689363668	5.43246068427472	5.38432203933729	4.50367888284757	-0.771375430307622	0.202314411946286	0.504746975435225
Merged-chr9-18293277-5	chr9	18293035	18293235	+	854.0150150000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025844, intron 1 of 10)	intron (NM_025844, intron 1 of 10)	868.0	NM_025844	66917.0	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	4.2738448302489	4.23815711993312	4.18718604605798	3.86767391926549	4.21105403010515	4.21834885146903	4.0760330041236	4.22894490605885	0.129063302913964	0.755305975151733	0.903652872648086
Merged-chr9-85497094-4	chr9	85497007	85497207	+	969.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-169957.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	5.65483856119997	5.38792697513109	5.42760542137363	5.57459373735743	4.90521019105428	4.97843604575796	5.73688070521111	5.03736822462281	-0.552826273638791	0.100279242738042	0.347539985336991
Merged-chr10-41477323-4	chr10	41477232	41477432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358838)	promoter-TSS (NM_001358838)	-678.0	NM_001358838	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	6.3202536468386	6.32264736736944	6.2232841658018	6.22780772189869	6.67682580892104	6.73647569518399	6.63189289227365	6.37220644219691	0.503926502114692	0.0192901536775304	0.124887001583732
Merged-chr11-49984134-4	chr11	49984049	49984249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-41182.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	6.06241824674712	6.30795657157571	6.10344067397611	4.70556579046945	6.38943036220898	6.3910823590481	5.42328847063801	5.71160377495058	0.158178929159911	0.797863965611797	0.921862017583033
Merged-chr18-74823685-2	chr18	74823551	74823751	+	831.25	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	44439.0	NM_177470	52538.0	Mm.245724	NM_177470	ENSMUSG00000036880	Acaa2	0610011L04Rik|AI255831|AI265397|D18Ertd240e	acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	protein-coding	3.5654541152524	3.17749095249376	3.6163638578475	3.32598670113061	3.38629934190737	3.45642345514013	3.55103284318503	3.6141842163808	0.262038585797779	0.612642806796386	0.832832725096038
Merged-chr1-51498676-4	chr1	51498551	51498751	+	865.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-20252.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	3.49814784364588	3.7031873673597	3.66533367642042	3.76712049858976	3.81895213070953	3.48670725301127	3.59815351955034	3.85583136938727	0.107068728136977	0.824312866454259	0.932602688135355
Merged-chr19-34193346-4	chr19	34193200	34193400	+	896.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001360717, exon 1 of 12)	5' UTR (NM_001360717, exon 1 of 12)	366.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	3.92548534200382	4.23811332927007	4.02659130097976	4.08832846795546	4.10512925136068	3.87867883725959	4.22843593773844	3.97499625156747	-0.0543463648036472	0.89763008785282	0.961755066043397
Merged-chr18-76326600-3	chr18	76326499	76326699	+	839.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64154.0	NM_001311070	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	4.14812701563256	4.78715386390721	4.27321404771027	4.12954677357618	3.72273611005382	3.45540410398648	3.5411603679767	3.61781880491451	-2.21712827403932	2.35576240128149e-05	0.000589180646383751
Merged-chr5-134313658-4	chr5	134313564	134313764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359066, intron 1 of 32)	CpG	1096.0	NM_001359063	14886.0	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	6.31952492888359	6.14698041803809	6.17368755868108	5.9897987723047	6.1486618288247	6.01787743195566	6.12253575785273	6.12958763804651	-0.0623047500960536	0.789511961577745	0.918515153062961
Merged-chr10-80387783-4	chr10	80387689	80387889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198615)	promoter-TSS (NM_198615)	-138.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	5.87623453317114	6.14987789775334	5.49181340342876	5.6481145271483	6.34236093501404	6.38379165638935	5.89368034788448	6.00821829790824	0.573947116123351	0.0393801443758188	0.19984222686356
Merged-chr6-89338855-4	chr6	89338753	89338953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 9 of 31)	intron (NM_008881, intron 9 of 31)	23760.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	5.39584646067375	6.01813919184988	6.0049472916403	6.47456665272752	5.82943506035999	5.67452302921931	6.03533024223092	5.77088218776492	-0.339232606121294	0.275222468801516	0.587001285462458
Merged-chr7-112023499-7	chr7	112023418	112023618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177249)	promoter-TSS (NM_177249)	12.0	NM_177249	74996.0	Mm.16974	NM_133758	ENSMUSG00000059263	Usp47	4930502N04Rik|A630020C16Rik	ubiquitin specific peptidase 47	protein-coding	5.73083348637173	5.87000463133558	5.67936830106214	5.62977972007457	5.87888164709473	6.18137086829595	5.93531257357496	5.94003843725557	0.416908043646252	0.0941586937778552	0.335643112200218
Merged-chr7-92669097-7	chr7	92668963	92669163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029078, intron 1 of 15)	intron (NM_029078, intron 1 of 15)	849.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	5.28620629575278	5.41757162212769	5.47281918422056	5.37655249593145	5.8706803978106	5.70395771902028	5.63129706479092	5.75156317120194	0.611389367661648	0.0198138606539618	0.127263200459154
Merged-chr11-77442849-4	chr11	77442750	77442950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 13 of 14)	intron (NM_177710, intron 13 of 14)	-21063.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	7.33636439661853	7.3401270953958	7.57404269845665	7.49181943898932	7.49137231986239	7.585510301804	7.50194365821323	7.16589748111087	0.00679007973128288	0.970999976391169	0.989565142300925
Merged-chr5-4758136-4	chr5	4758038	4758238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021457)	promoter-TSS (NM_021457)	78.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	6.00405767857183	5.65940597671752	6.02567260513077	6.4342825113691	5.53505436268617	5.79859700161045	5.95351074437804	5.37054039505084	-0.638359286154222	0.0340719898230836	0.182211261839376
Merged-chr1-161974613-3	chr1	161974457	161974657	+	627.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204904, intron 1 of 6)	intron (NM_001204904, intron 1 of 6)	5079.0	NM_001204904	75368.0	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	3.2892388110398	2.96605954974354	3.23901783449642	3.05187037717921	2.72004434626958	2.9921326754072	3.00217284687222	2.94835123176532	-0.963050191207128	0.117788558211198	0.379631540762192
Merged-chr8-35495569-4	chr8	35495460	35495660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026067)	promoter-TSS (NM_026067)	-27.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	7.64583123080155	7.73596114618661	7.184016664455	7.78596394969953	7.58654285565641	7.65350024329335	7.83895939913882	7.55480275831956	0.0575773639667432	0.773088609693804	0.911199828859751
Merged-chr4-63815868-4	chr4	63815776	63815976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	45408.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	6.0843517099211	5.71358626678441	6.0199829251605	6.39801655673386	6.15163631473655	6.30332280781485	6.0112655940054	6.66480430892181	0.321247700258148	0.251588211465164	0.562892525080843
Merged-chr10-117063466-2	chr10	117063366	117063566	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001358767)	promoter-TSS (NM_001358767)	-91.0	NM_001358767	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	6.31590731178438	6.15129880362801	6.53861007140174	6.31795861124963	6.16826174513479	6.41701311061012	6.22776598662942	6.83720294972859	0.147747230066234	0.558895084059637	0.80342508711059
Merged-chr8-120745452-4	chr8	120745352	120745552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 3 of 8)	intron (NM_001301811, intron 3 of 8)	6813.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	6.55348750850137	5.86638989324626	6.69955642871932	7.17182658452744	5.92966601341669	5.60621186588157	6.37506686301249	6.38616845690599	-0.81419773162126	0.01524153271605	0.106058955635519
Merged-chr4-109257792-4	chr4	109257685	109257885	+	972.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22153.0	NM_001033226	108802.0	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	5.17282459796315	5.35661870248171	5.23916625713399	5.66858910749057	4.91877838949058	5.21046843027895	5.30492546538781	5.6638375097424	-0.171854592866898	0.605684444159013	0.829013403791909
Merged-chr7-133154129-4	chr7	133154045	133154245	+	883.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25894.0	NR_046279	74970.0	Mm.491044	NR_046279	ENSMUSG00000109816	4930483O08Rik	-	RIKEN cDNA 4930483O08 gene	ncRNA	4.19653973850991	3.94828021047549	4.40955472544495	4.54111179521001	4.26090850042384	4.12035426119903	4.08461768739312	4.44487094057557	-0.1705278586815	0.689708511085402	0.873598870214034
Merged-chr3-106486196-5	chr3	106486090	106486290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033207)	promoter-TSS (NR_033207)	150.0	NM_028110	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	5.06124858467702	5.33396513083232	5.06210941406206	4.61089022955371	4.82275356571324	4.91130335992207	4.90266937112724	4.95832876455307	-0.260948787205332	0.458192485747953	0.741119194927503
Merged-chr14-101516258-3	chr14	101516155	101516355	+	937.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	92936.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	4.60704250925451	3.93294971581849	4.14185287459324	4.45249435626374	3.99244451406896	4.11674567584864	4.07654726299478	3.99045018936243	-0.691985955484032	0.11223705708841	0.370303211573928
Merged-chr15-50650030-4	chr15	50649906	50650106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	239043.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	5.95479816304806	6.08083391733987	6.33334829336175	6.07449464030418	6.38951530912249	5.98683805298483	6.09742633611844	6.01919183674333	0.0494105706758883	0.841060710725265	0.939525416908854
Merged-chr6-145247304-4	chr6	145247197	145247397	+	919.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021284, intron 1 of 4)	intron (NM_021284, intron 1 of 4)	2934.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	4.05881803747119	4.13094810653876	4.2142091148734	4.26242128601554	4.31982128160741	4.5681150081928	4.79825028545795	4.51394226879175	0.883329437577233	0.0235503944526237	0.142529846674883
Merged-chr18-68301016-1	chr18	68300916	68301116	+	1000.0	f0_c57.idr	promoter-TSS (NM_153794)	promoter-TSS (NM_153794)	596.0	NM_001361003	67897.0	Mm.27544	NM_026440	ENSMUSG00000009535	Rnmt	2610002P10Rik|AI848273|Rg7mt1|mKIAA0398	RNA (guanine-7-) methyltransferase	protein-coding	3.98278750141142	4.01770777210933	4.18562700534788	4.07005224301476	4.5067285478237	4.44714685084192	4.29931527115727	4.35773186248842	0.842086021887774	0.0291769211540522	0.164211597281907
Merged-chr5-117147707-1	chr5	117147607	117147807	+	860.0	f1_balb.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	14119.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	2.66312085577667	2.85649110409526	2.78149022762057	3.0171688295918	2.30799741167624	2.3296672785039	2.30708490623895	2.46250179463374	-3.32974998870907	0.000341847861335171	0.00564556587516847
Merged-chr14-45329706-4	chr14	45329607	45329807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025959)	promoter-TSS (NM_025959)	-117.0	NM_025959	67089.0	Mm.18472	NM_025959	ENSMUSG00000021832	Psmc6	2300001E01Rik|AI451058	proteasome (prosome, macropain) 26S subunit, ATPase, 6	protein-coding	8.46423096605423	8.66917982088076	8.50983752106948	8.57401530829944	8.27418025662566	8.53900935081253	8.43631527465966	8.11673744347752	-0.26450935786377	0.106991548339134	0.360789815199509
Merged-chr4-53429982-3	chr4	53429885	53430085	+	772.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10428.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	4.30874687463302	3.76601309477097	3.84683505128532	3.46633398912577	3.59485552088976	3.58952320472109	3.18776435247625	3.40526500662355	-1.31510472363995	0.0210390413112975	0.132453878881365
Merged-chr7-67425852-4	chr7	67425761	67425961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53003.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	7.39360583562897	7.53400336130798	7.46245685206243	7.73754807087001	7.20674009135158	7.34470010246308	7.53317251200822	7.16200732998839	-0.310300063360734	0.105974692928467	0.358618078727554
Merged-chr1-6476666-2	chr1	6476566	6476766	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10565.0	NM_001244693	240690.0	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	2.99025869389208	3.1079939866487	2.77395561430119	2.50933664404735	3.70385689304655	3.29381795486619	3.16476499433722	3.11653840129094	1.94961464182964	0.00355642596061725	0.036496949747805
Merged-chr8-60983826-4	chr8	60983727	60983927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007711)	promoter-TSS (NM_007711)	-516.0	NM_173874	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	6.33582201781848	6.59100989727662	6.56632911218783	6.64439275326938	6.4696476409068	6.78973170247029	6.5954500249426	6.79626266339834	0.163473776544719	0.450972790246065	0.735693808143671
Merged-chr11-23307243-2	chr11	23307143	23307343	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190401, intron 1 of 79)	CpG-1781	348.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	4.50015330510604	4.0802261941897	4.11911965212391	3.6485350535914	4.25823908223144	4.47515316629708	4.10126901658367	4.46071360611186	0.549056322171904	0.22671238282161	0.535335744986047
Merged-chr10-44698184-3	chr10	44698086	44698286	+	789.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-239438.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	3.36322838083752	3.24741185848315	3.71906119296104	3.1944569000463	3.41169802018968	3.35442456221124	3.4615724706402	3.52620628418321	0.183684042761738	0.730029826037316	0.892877519245152
Merged-chr13-30625648-2	chr13	30625548	30625748	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	10605.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	2.70527362209486	2.91377799373063	2.96835455320844	2.71018870734794	2.66180813093551	3.07944213334653	3.06928569922456	3.02489883269172	0.614114185028633	0.330215024586134	0.641648008542111
Merged-chr7-39449444-4	chr7	39449368	39449568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243021)	promoter-TSS (NM_001243021)	-50.0	NM_001243021	233147.0	Mm.148946	NM_001243021	ENSMUSG00000030424	Zfp939	9430025M13Rik	zinc finger protein 939	protein-coding	7.84593933415955	8.01266862389031	8.14579665989083	8.42381361462005	8.09624716412145	8.27302617588329	8.3060902755154	8.12173832055988	0.0828874541736579	0.65610126284698	0.856436607826756
Merged-chr14-45005929-4	chr14	45005839	45006039	+	974.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17828.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	4.43289243944289	4.54461357401296	4.08373089953559	4.23838707719331	4.24640583372784	4.15653490738082	4.01611455759633	4.08135836262504	-0.501498391219019	0.223196972807613	0.53121133271385
Merged-chr9-103175001-1	chr9	103174901	103175101	+	658.0	f0_balb.idr	intron (NM_173781, intron 7 of 7)	intron (NM_173781, intron 7 of 7)	27064.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	3.77211758311214	3.95973655361344	3.40811742265621	3.73090895782336	3.74033088431323	3.89313031627483	4.08034244807607	4.05507081996946	0.59777904332037	0.207455171139562	0.511447929091922
Merged-chr3-87906188-4	chr3	87906095	87906295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331052)	promoter-TSS (NM_001331052)	-126.0	NM_008231	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	8.42744822052456	8.9176092511252	8.58261164653895	8.49843195478277	8.17633215725535	8.2129246024246	8.2941685431901	8.04370678700634	-0.551796166552373	0.00165843729475538	0.0202158992215157
Merged-chr14-60273529-4	chr14	60273402	60273602	+	965.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144843, intron 1 of 13)	intron (NM_144843, intron 1 of 13)	8297.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	4.83091714431218	4.69798062068821	4.36802723699594	4.41314041165486	4.34416575126024	4.67411449529128	4.30199465130384	4.65553686692003	-0.190171334907364	0.621211402575491	0.837757076551181
Merged-chr3-107031712-3	chr3	107031644	107031844	+	819.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4418.0	NM_008418	16491.0	Mm.30640	NM_008418	ENSMUSG00000047959	Kcna3	Kca1-3|Kv1.3|Mk-3	potassium voltage-gated channel, shaker-related subfamily, member 3	protein-coding	3.51975773089086	3.29391965375671	3.41467701166965	3.56068096178506	3.31632799890828	3.34920056596937	3.40152449845996	3.35669990186125	-0.360190639275085	0.483267968720314	0.757710267975312
Merged-chr7-67951780-4	chr7	67951654	67951854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010513)	promoter-TSS (NM_010513)	-503.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	7.42738881101928	7.33524361742375	7.17555971076834	7.32889405167632	7.00673225645255	6.88325884846044	7.18350966267056	6.90959387959126	-0.433948762509444	0.0215722615128235	0.134597826281667
Merged-chr17-10343890-2	chr17	10343790	10343990	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19288.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	2.78751259943626	2.68242477728086	2.67044092725349	2.45423815059085	2.63097980967248	2.50007761706653	2.46469742343237	2.60616216628058	-0.480877173350702	0.485775090819514	0.759583163582571
Merged-chr19-55658761-4	chr19	55658651	55658851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	43453.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	7.74651687245464	7.93055994416436	7.74782350246525	7.9377487628983	7.3020563580722	7.09172068133192	7.31026430512737	7.03413886040228	-0.867306264408787	1.66674165441521e-06	5.56197863195593e-05
Merged-chr18-4068841-3	chr18	4068760	4068960	+	682.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96972.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	3.59863608406982	3.5643249086894	3.48409181621771	3.65782418508658	3.659291837621	3.65884494274245	3.78593271466425	3.8462146135792	0.471062825980865	0.31291190521274	0.624831860549224
Merged-chr5-137883529-3	chr5	137883441	137883641	+	961.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11783.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	3.87678999161928	3.7269815517484	3.82784520033094	4.20261274338955	3.716280271342	3.89546562093332	3.70831614388565	3.72069720357385	-0.517168330409577	0.270476269846348	0.582320012375668
Merged-chr13-41432501-4	chr13	41432402	41432602	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	54858.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	5.58412860603824	5.60672725491348	5.04300440578507	5.17694720715964	5.14648820605948	5.29357889672012	5.22447133993804	5.65243195735522	-0.0537339854693172	0.867332526776694	0.950313421774078
Merged-chr16-75592877-4	chr16	75592791	75592991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198302)	promoter-TSS (NM_198302)	0.0	NM_198302	224344.0	Mm.273214	NM_198302	ENSMUSG00000032940	Rbm11	A330018F01	RNA binding motif protein 11	protein-coding	6.1714719644477	6.364007924242	6.2697585781246	6.59960693434132	5.88275581780166	6.15439529401018	6.63294073352052	5.82229567015261	-0.319284074033488	0.251582968501397	0.562892525080843
Merged-chr6-145855869-4	chr6	145855763	145855963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9557.0	NM_024469	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	6.79610374361537	6.73350651795755	7.06442472120602	6.7449399082949	6.42106687736231	6.26980339609477	6.21315920765154	6.77885178532663	-0.569704611987606	0.0140899505511321	0.10043146307621
Merged-chr4-9641164-4	chr4	9641055	9641255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	2562.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	5.74741684173634	5.58770173095651	5.7239424725086	6.00323633439508	5.63385029001709	5.62647479165237	5.61907821997601	5.76834303124791	-0.214420961896794	0.420229562062086	0.713162823854942
Merged-chr10-78028253-4	chr10	78028118	78028318	+	869.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14069.0	NM_001081695	54427.0	Mm.13433	NM_019448	ENSMUSG00000000730	Dnmt3l	D6Ertd14e|ecat7	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding	3.88559823904155	3.46833046602409	3.48071137497862	3.7121863376343	3.681594371361	3.65420163785718	3.52586645934146	3.79477581250143	0.054026443929858	0.911733138405251	0.967021434294281
Merged-chr17-86301410-4	chr17	86301334	86301534	+	804.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	-14256.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	3.795480966303	3.77952052071862	3.44878159711843	3.83130052567249	3.71482408835679	4.06218485485911	3.87697502799299	3.79382701137287	0.382817164089542	0.414680981573511	0.70914229032969
Merged-chr10-117397348-4	chr10	117397227	117397427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-20354.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	6.1441337422927	6.32368549193865	6.2257949625377	6.67189265885877	6.24812196161983	5.96767248014072	6.37438785737214	6.24069421071747	-0.239132641933525	0.339313057683651	0.648670913782522
Merged-chr10-96751725-4	chr10	96751610	96751810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134709.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	5.82114570763276	5.56877253428615	5.70164435023279	6.01723817641664	5.47647435593334	5.32319030905804	6.05875161562188	5.79484098072411	-0.174925217620015	0.558070502285779	0.802983538184281
Merged-chr19-37702895-1	chr19	37702795	37702995	+	581.0	f0_balb.idr	Intergenic	Intergenic	5087.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	3.45923217963202	3.18345945832637	3.26790388382036	3.14125718963611	2.82832375548369	2.95004643286493	2.76080838179146	2.91009548943145	-1.7823411222591	0.00506646512031678	0.0479683321094743
Merged-chr9-49120176-4	chr9	49120065	49120265	+	842.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17386.0	NM_030709	80893.0	Mm.72799	NM_030709	ENSMUSG00000032268	Tmprss5	spinesin	transmembrane protease, serine 5 (spinesin)	protein-coding	3.99084430796033	3.83796675958252	4.45453378884343	4.1470588758779	3.91797520623589	3.89226875305617	4.32361176776424	4.08669808179339	-0.159988196385624	0.721394876335129	0.888753092785481
Merged-chr6-115361115-4	chr6	115361044	115361244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308352)	promoter-TSS (NM_001308352)	0.0	NM_001308352	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	5.95135532512625	5.85747276886498	5.84103493013286	5.86207588497955	5.84595479508642	5.70318176441467	5.83429702906791	5.68892843434548	-0.164858182189888	0.501710741399195	0.769348331159891
Merged-chr9-106230153-4	chr9	106230032	106230232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7534.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	6.70026933445818	6.74986687613287	6.42975835054185	6.82886329357974	7.04551044567861	7.07510160692494	6.83773708705294	6.95769771572262	0.400471231456562	0.0517051562656714	0.236362908323758
Merged-chr7-30421713-4	chr7	30421655	30421855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360906)	promoter-TSS (NM_001360906)	24.0	NM_001360906	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	6.88003496549713	7.4690581080065	6.18639772384589	5.89084407633053	6.88767181072912	7.22805255598677	6.81981836189154	6.42701877154228	0.151407375422724	0.776936887851071	0.913015118902433
Merged-chr4-125102923-4	chr4	125102837	125103037	+	857.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290701, exon 5 of 7)	exon (NM_001290701, exon 5 of 7)	17803.0	NR_151472	70088.0	Mm.291214	NM_027310	ENSMUSG00000028863	Meaf6	2310005N01Rik|2810036M01Rik	MYST/Esa1-associated factor 6	protein-coding	3.99764529907983	3.75217361176014	4.13175349122126	4.17262306855077	3.72220458073313	3.85881268571203	4.11288603500339	3.79322723392647	-0.427101750875377	0.347518305736583	0.655536266603707
Merged-chr16-90259183-4	chr16	90259080	90259280	+	921.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 4 of 19)	intron (NM_001346799, intron 4 of 19)	25306.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	4.78385599100729	5.17428173212959	4.86234977680775	5.0654827804703	5.19753679151688	4.87980736571975	4.68057755523351	5.15962923397803	0.0312283876063785	0.926671758194298	0.973084637621148
Merged-chr11-71849613-4	chr11	71849473	71849673	+	965.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	90549.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	4.40310423287081	4.53302128262619	5.28081595541236	5.22657909098842	4.59407642426854	4.20687487192263	4.60435347916598	4.62294428415726	-0.857519074746941	0.0434959210824849	0.212185331144554
Merged-chr4-99386937-3	chr4	99386837	99387037	+	742.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	192790.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	3.18352790853588	3.09020486084805	3.85840013421058	3.44281780311722	3.36015428397992	3.42821290494777	3.71408169262276	3.31151786209074	0.116710713194808	0.84068217819791	0.939386448382246
Merged-chr3-87361342-4	chr3	87361221	87361421	+	805.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 2 of 5)	intron (NM_009690, intron 2 of 5)	3440.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	3.92508112979417	3.73743752855918	4.28595387821347	4.32968749297515	3.98465414581669	3.99285060582264	3.80410397930116	4.39296341292468	-0.104392176425184	0.82600045150523	0.933214996236359
Merged-chr2-170133520-4	chr2	170133368	170133568	+	989.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159683, intron 1 of 6)	CpG	-2248.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	4.48891903564733	5.03641922067127	4.57867730397226	4.6673053660274	4.89700707274017	4.87522065317248	4.55796861989943	4.88053086478343	0.206825041915357	0.563216037190058	0.806187480040249
Merged-chr11-107511039-4	chr11	107510947	107511147	+	792.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31519.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	4.0183929552355	4.06109951198434	4.15631864792257	4.02569707977242	3.97850591158952	3.92971123332093	4.0489533295964	4.15373159542193	-0.0907803743905301	0.825780022168151	0.933172369962049
Merged-chr13-92861627-3	chr13	92861511	92861711	+	975.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16824.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	2.97172991585617	3.51846286420046	3.12828142959113	2.79575531818863	4.03326474162697	3.9414634158681	3.84057927311524	3.45598633414146	2.41137782833324	6.72854768992091e-05	0.00145439203164555
Merged-chr17-29034391-2	chr17	29034291	29034491	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_036613, intron 1 of 6)	ID4|SINE|ID	1731.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	3.41492826812038	3.36203446421485	3.46463995650279	2.85840554190842	3.02903033144395	3.04633475179194	3.12507082001096	3.19550720749978	-0.735008628566294	0.227647046366527	0.53635063762613
Merged-chr11-85235562-2	chr11	85235462	85235662	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025825)	promoter-TSS (NM_025825)	396.0	NR_028329	654810.0	Mm.209580	NR_028329	ENSMUSG00000085628	Appbp2os	D630032N06Rik	amyloid beta precursor protein (cytoplasmic tail) binding protein 2, opposite strand	ncRNA	3.7629100257541	3.56574828560128	3.4527106158801	3.29404123873624	3.46345756616612	3.78731347030066	3.31885462549518	3.61536535633798	0.109636587375984	0.833287156448473	0.936237948428556
Merged-chr11-16629842-4	chr11	16629717	16629917	+	895.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-121333.0	NM_001109971	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	4.13362923761099	4.00576628233377	4.34264800366788	4.57260207936157	4.02243762158052	3.55234105269149	3.92294407774645	4.08564295081736	-0.987115125635037	0.0371429379475094	0.192262175853812
Merged-chr13-118420611-2	chr13	118420513	118420713	+	1000.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-33361.0	NM_021556	59054.0	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding	3.91199196544259	3.93658277038938	3.76819670366005	3.64120974131693	5.59950572472299	4.95680137155043	5.79149898562967	5.10275839118552	3.52389665472068	3.5007109210376e-17	8.01212548709116e-15
Merged-chr7-43919995-4	chr7	43919914	43920114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13757.0	NM_174865	317652.0	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	6.88271715022495	6.63193584106419	6.38749561545594	6.86099202308862	6.73219868834778	6.63881765540926	6.89901512159978	6.52645889777461	-0.00968786872365542	0.965498405546614	0.987780988183285
Merged-chr11-84918674-3	chr11	84918565	84918765	+	885.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2299.0	NM_001005223	448850.0	Mm.379733	NM_001005223	ENSMUSG00000020526	Znhit3	Myohd1|TRIP-3|Trip3	zinc finger, HIT type 3	protein-coding	3.97344748039853	3.99029000380512	3.62090818245058	3.50381256949358	3.78470786688074	3.95562118415614	3.71692552938357	3.61899886428675	-0.0189288504724579	0.968978404027064	0.988862740113602
Merged-chr7-27933679-4	chr7	27933598	27933798	+	956.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4268.0	NM_028538	73430.0	Mm.379224	NM_028538	ENSMUSG00000070709	Zfp974	1700049G17Rik|AV321011|BB026409	zinc finger protein 974	protein-coding	4.46789860715506	4.9474775584173	4.6416525778713	4.42220850241609	4.83013589468666	4.96570511536889	4.69793016683262	4.71710218087559	0.375750763695551	0.29489461731832	0.607033490837296
Merged-chr11-8589225-2	chr11	8589125	8589325	+	945.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	75310.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	3.24510361440116	3.39320343803888	3.52667128825525	3.5568058494859	3.49481773828543	3.35629167362339	3.40830339963619	3.30518142142201	-0.160353735807101	0.757192375775984	0.90457703435425
Merged-chr12-108700205-3	chr12	108700036	108700236	+	826.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027299, intron 1 of 2)	intron (NM_027299, intron 1 of 2)	2170.0	NM_001171002	70059.0	Mm.207605	NM_027299	ENSMUSG00000021263	Degs2	2210008A03Rik|AI852933|DES2	delta(4)-desaturase, sphingolipid 2	protein-coding	3.56815794545617	3.57898832371113	3.77193225634076	3.68549886890458	3.60411570390246	3.50593589737244	3.38062933596531	3.81564857198829	-0.211772975812707	0.665866999303148	0.861693855669668
Merged-chr5-139378053-4	chr5	139377963	139378163	+	967.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033147, exon 1 of 1)	non-coding (NR_033147, exon 1 of 1)	366.0	NR_033147	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	4.7980505952536	4.58788944506182	4.60640271211499	4.80552818227471	4.88283496448212	4.78043207425959	4.54367134875142	4.75946193054292	0.0894439217198976	0.794593620817808	0.920576505358097
Merged-chr1-128705353-4	chr1	128705260	128705460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113061.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	8.20431063936658	8.39984457353227	8.10013744959948	8.16339003339655	8.30137725114743	8.25139298937205	8.33873945711008	8.08830435208964	0.0360325874655586	0.824154276943129	0.932482704694281
Merged-chr12-16532589-3	chr12	16532488	16532688	+	747.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57182.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	3.8319676086839	4.15555415929734	4.45621249517242	4.44958639017104	3.76456382284878	3.58420149880421	3.58614404153471	3.53197700676799	-1.81096270989222	0.000311190463969177	0.00522164687290477
Merged-chr1-57850042-3	chr1	57849938	57850138	+	981.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164566, intron 1 of 11)	intron (NM_001164566, intron 1 of 11)	4467.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	4.46799041994492	4.61778548129501	4.00860794672824	4.73051327020828	3.66463710941525	3.65484343996082	3.65390411173043	3.45797168650593	-2.52728715362061	7.96893467891408e-07	2.8403645543837e-05
Merged-chr18-4634934-2	chr18	4634850	4635050	+	878.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001081963)	promoter-TSS (NM_001081963)	21.0	NM_001081963	240185.0	Mm.33179	NM_001081963	ENSMUSG00000033960	Jcad	1110056P05Rik|9430020K01Rik|Gm328|mKIAA1462	junctional cadherin 5 associated	protein-coding	4.21471081581066	4.43647396450592	4.57842876340172	4.28698778258288	4.2093531713749	4.19212717894681	3.94299495735478	4.38689042160123	-0.461307913072814	0.255692861211334	0.567330491526232
Merged-chr11-3183374-2	chr11	3183258	3183458	+	994.833374	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 4 of 32)	B3|SINE|B2	10105.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	3.46857733998446	3.22749608001021	3.46917981741697	3.43639838571031	2.48383107305741	2.65044683326293	2.61944283869782	2.62452587370335	-6.26796819061459	2.45135432010388e-08	1.20348169873513e-06
Merged-chr10-58406072-4	chr10	58405967	58406167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359116, intron 2 of 9)	ORR1E|LTR|ERVL-MaLR	11694.0	NM_001346676	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	6.71404239622029	6.62994662426865	6.62349322689863	6.78532469941153	6.76670909852065	6.84634079329428	6.7384764652672	6.71044854625158	0.09710594957219	0.623417074578006	0.8389509982641
Merged-chr7-109083324-3	chr7	109083225	109083425	+	809.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038624)	promoter-TSS (NM_001038624)	-1.0	NM_178780	320360.0	Mm.71007	NM_178780	ENSMUSG00000048330	Ric3	E130307J04Rik	RIC3 acetylcholine receptor chaperone	protein-coding	4.06938756030279	3.69789003661153	3.79783318904147	3.90350165587975	3.68877684712271	3.69441810650786	3.78218223373342	3.69037584584234	-0.476765605912333	0.297975025946217	0.610164772946546
Merged-chr6-129180530-4	chr6	129180427	129180627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053109)	promoter-TSS (NM_053109)	-88.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	7.83522330588892	7.8549866058762	7.62400325207854	7.86068943567307	7.94021433363638	8.01391495322527	7.82091006633086	7.81611515159809	0.128401882432849	0.439200636570366	0.727138420450819
Merged-chr10-80822201-3	chr10	80822109	80822309	+	887.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4447.0	NM_001301034	18245.0	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	4.14245686310124	4.03637233986311	3.5799002743868	3.74109501843179	3.68752080660397	4.31085675491005	3.99413805889119	3.64031783939348	0.115674427681643	0.816766152713238	0.929518098916358
Merged-chr4-124693614-4	chr4	124693488	124693688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026031)	promoter-TSS (NM_026031)	-34.0	NM_026031	67205.0	Mm.259121	NM_026031	ENSMUSG00000028907	Utp11	2700082D03Rik|CGI-94|Cgi94|Utp11l	UTP11 small subunit processome component	protein-coding	6.55327932038754	6.70727639149104	6.32174424549285	6.60829357842372	6.48911113509982	6.57534846097231	6.90933100016385	6.73189439066834	0.172988488427584	0.435394705185736	0.724578796858046
Merged-chr2-98662333-4	chr2	98662233	98662433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	1194676.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	11.4283187286137	10.5422840282715	11.7382760725317	12.01398094746	11.1167773991418	11.2647876130952	10.8284289076375	11.8123398572261	-0.276513954676113	0.495658541431493	0.765874409085869
Merged-chr11-62457398-4	chr11	62457314	62457514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177229)	promoter-TSS (NM_177229)	-82.0	NM_177229	20185.0	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	6.42979885373363	6.57132521758701	6.49735182286505	6.25447927796462	6.39263949935502	6.38418871816361	6.38096503161454	6.22350564404937	-0.124121002711894	0.575455798112648	0.813035162472508
Merged-chr3-107864144-4	chr3	107864061	107864261	+	894.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13069.0	NM_133867	99662.0	Mm.108491	NM_133867	ENSMUSG00000040600	Eps8l3	AI504489|Eps8r3	EPS8-like 3	protein-coding	4.61295948701326	4.65026269860056	4.34461637228618	4.54471135168573	4.85397499423787	5.00585100656936	4.70730871683929	4.56960842124736	0.532153325182039	0.130452998108315	0.402057326362926
Merged-chr16-12473740-4	chr16	12473647	12473847	+	888.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-337643.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	4.6128681749356	4.37666230551405	5.02893340838532	5.43726041765455	4.49750960593281	4.31218422449767	4.41895335187281	4.61059905583189	-1.01988477647477	0.0169821693234426	0.114488902280102
Merged-chr12-8864665-4	chr12	8864566	8864766	+	979.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56641.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	4.71304966977394	5.01291185332886	4.98781424826411	4.3980539150802	4.70040246470818	4.88703152051851	4.48662638637236	4.4112611779435	-0.327763455277508	0.397921154725134	0.696168855159895
Merged-chr10-67536837-4	chr10	67536715	67536915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1054.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	5.03631341330151	4.87159072913574	5.00292498132376	4.8355755119321	5.06584581335815	5.24335930388692	4.94387780070046	5.3057561834541	0.414386909476938	0.183148317726621	0.479983357931603
Merged-chr8-57541614-4	chr8	57541499	57541699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 6 of 11)	intron (NM_001167981, intron 6 of 11)	29756.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	6.31822862227035	6.11733762474941	6.37188699125615	6.64012581101462	6.07335305269459	5.92021473445658	6.37288644879701	5.96712000709635	-0.44357209682206	0.0800451121236463	0.306467163458072
Merged-chr11-29654015-4	chr11	29653907	29654107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-38891.0	NM_194053	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	6.28523978851744	6.52506258046602	6.56903025001286	6.35319697176189	6.26836084504542	6.12448337156124	6.25415925679481	5.8920194482131	-0.428607801500406	0.0666187546529114	0.275145429815457
Merged-chr4-145037167-4	chr4	145037070	145037270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 65 of 69)	intron (NM_001276465, intron 65 of 69)	144033.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	6.46568307398723	6.45842988011563	6.66895464173276	7.03232284573024	6.29188261122895	6.03060359334778	6.29164229605069	6.33826466378348	-0.660824432931428	0.00740666333444769	0.0634415029461676
Merged-chr1-95668542-4	chr1	95668413	95668613	+	885.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009183)	promoter-TSS (NM_009183)	-919.0	NM_001159745	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	3.70193927240257	3.86905991899622	4.12039800666185	3.99028615311944	3.88104746668823	3.50970296730112	3.51437149594269	3.85533341145455	-0.644539090300461	0.185750932733391	0.483633244605678
Merged-chr15-59760309-4	chr15	59760208	59760408	+	872.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34651.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	4.64596925779475	5.00524068515462	4.98391607447174	4.89957408900719	4.68571435670735	4.78097879538129	4.99183511092033	4.98052129675579	-0.067820965360602	0.838755458167644	0.938853173799904
Merged-chr7-100520886-4	chr7	100520792	100520992	+	934.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6077.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	4.6243095108055	4.55982895623022	4.20531397214192	3.9708892883269	4.87952734513897	5.04848242274698	4.78691771016786	4.80730802954965	1.16376722992622	0.00246957303697956	0.0275045750585461
Merged-chr12-33311883-1	chr12	33311783	33311983	+	634.0	f0_balb.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	9368.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	2.92032539828765	3.28267728165868	3.36251938481281	3.27018355911843	3.1166359873235	3.42151016788622	3.498161377859	3.18917514826351	0.328801471468672	0.565036663017808	0.807206529642693
Merged-chr15-25525548-3	chr15	25525447	25525647	+	693.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97003.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	3.6481156818796	3.2554984335049	3.48393372556874	3.49618283473023	3.55107833442708	3.96142800406642	3.73127670208446	3.48209616650421	0.672099473725604	0.18310849761635	0.479931757527872
Merged-chr14-47513844-4	chr14	47513688	47513888	+	922.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027414, intron 4 of 5)	intron (NR_027414, intron 4 of 5)	41227.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	4.14189901051429	3.88768513693439	4.28605205993301	4.29511591423323	4.46546156567722	4.70126056049194	4.26697990225103	4.5294994296598	0.770581988132787	0.0553094825179528	0.245907944643057
Merged-chr4-53122043-4	chr4	53121966	53122166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	37829.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	8.37388193885046	8.21394891685361	8.26638708314566	8.42508261110396	8.18553929365095	8.00582117764297	8.32043160129764	8.14797522272118	-0.196693415218501	0.220287512184694	0.528136509474699
Merged-chr7-64357662-4	chr7	64357560	64357760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177893, intron 8 of 13)	MLTR14|LTR|ERV1	16435.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	6.4164658635819	6.2614502601541	7.13540213445314	7.40493541105492	6.30211363887445	6.13600916403103	7.09932918713462	6.664964580686	-0.406044215546654	0.405826387954229	0.702456276834042
Merged-chr2-102968500-4	chr2	102968402	102968602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66837.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	7.95409053032195	8.26793124372117	8.02283393430902	8.14589109454591	7.67230680221692	7.92226940322387	7.8606374550226	7.52530626999425	-0.460254390517318	0.00969335031988576	0.0772029744230892
Merged-chr1-66816558-1	chr1	66816458	66816658	+	1000.0	f0_c57.idr	intron (NM_001357156, intron 1 of 14)	CpG	1037.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	4.38320231797212	4.24507218826324	4.60040503351382	4.081166956914	4.8091318626656	4.88684057374826	4.49711977739901	5.03138805804728	1.09534457500542	0.00376142585766722	0.0381551277074099
Merged-chr2-68879287-4	chr2	68879171	68879371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	MTEa|LTR|ERVL-MaLR	17830.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	6.20745628439928	6.75079156392622	6.68400290976488	6.152476468956	6.8231126427986	6.97154204122107	6.57461618037975	6.48969368223068	0.378791978282727	0.134309430469991	0.407935723647066
Merged-chr14-14013065-4	chr14	14012997	14013197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_139227, exon 2 of 12)	exon (NM_139227, exon 2 of 12)	606.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	6.62689710461104	6.44143693335437	6.93022322106459	6.79958892746451	6.79877104689371	6.56704055686204	6.75371720821416	6.22511833769274	-0.14578817367432	0.539791394721821	0.792406302070178
Merged-chr7-59229195-4	chr7	59229144	59229344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173010, exon 1 of 9)	5' UTR (NM_173010, exon 1 of 9)	494.0	NM_173010	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	6.14433799401518	6.48226936712139	6.85498828515634	6.63673829265443	6.34028757644721	6.34618221786527	6.44187149362299	6.93525405223124	-0.028750554236074	0.912209002482544	0.967199155316195
Merged-chr16-94488549-3	chr16	94488447	94488647	+	997.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38082.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	4.55918426284089	5.0055317479027	4.5998529227174	4.79303501095964	4.75638530304893	4.31456243826719	4.3205437181779	4.18421619769686	-0.720367025702987	0.0723513330946206	0.289016180803728
Merged-chr16-20694675-4	chr16	20694580	20694780	+	926.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133778)	promoter-TSS (NM_133778)	-377.0	NM_133778	78408.0	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding	5.17475113044679	5.35468758024079	5.14525940247303	4.42404000182046	4.91274331384145	4.93128156722757	5.23602217836065	4.79014541413006	-0.15906478751035	0.677789106557442	0.867844629807921
Merged-chr8-117480695-4	chr8	117480558	117480758	+	941.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17617.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	4.28820728073539	4.24806796383386	4.28884038189065	4.42268100125744	4.65336467099239	4.81259937682393	4.89087945831549	4.94248519404134	1.08812662635437	0.00246683942429257	0.027478429324213
Merged-chr9-21238869-4	chr9	21238880	21239080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_016679, exon 1 of 5)	5' UTR (NM_016679, exon 1 of 5)	352.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	5.56763785571152	5.68360074905811	6.30122272605114	5.46388049950898	5.52135999620877	5.68916933936633	5.29976741602659	5.72037609562258	-0.36866702514983	0.244820583807211	0.555884768862855
Merged-chr7-25756252-4	chr7	25756149	25756349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001190974)	TTS (NM_001190974)	-1490.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	7.87230904323586	8.08237923806306	7.93068680574516	7.68001894287352	7.82972095572461	7.82803221650414	7.89945178714147	7.64524991783685	-0.11455612000449	0.517905709067865	0.779126927276672
Merged-chr1-86516191-4	chr1	86516099	86516299	+	948.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10358.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	5.04725938835959	5.13918362083765	4.8703879116519	4.3864107769746	5.10779529052052	5.43228642884366	5.02326381031588	4.94110782092023	0.505798078636015	0.165247177785537	0.45584835823083
Merged-chr12-3698205-4	chr12	3698110	3698310	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 9 of 17)	B4|SINE|B4	-108770.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	5.56457810883516	5.45163880994858	5.8373955921932	6.08288229753223	5.50537761828861	5.08357774077509	5.87205876305015	5.78800256757196	-0.288438772021212	0.370103866999458	0.674277021263455
Merged-chr14-77897370-3	chr14	77897268	77897468	+	997.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-6871.0	NM_178825	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	3.93722308956662	4.18502225107786	4.32348118604067	3.74691257634866	5.03761030652128	4.67957515580951	4.90206665905525	4.92386987981641	1.95535095376415	4.33465185544527e-07	1.62730055073175e-05
Merged-chr12-106016473-4	chr12	106016366	106016566	+	947.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029843, intron 1 of 13)	L1MD|LINE|L1	6203.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	4.72215002953139	4.64411991214554	4.52417211321139	4.99669873511219	4.51597574490839	4.56561352262708	4.54570604340325	4.68250680290884	-0.383292629319808	0.289426370427149	0.601426348430182
Merged-chr7-127244484-4	chr7	127244386	127244586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177362)	promoter-TSS (NM_177362)	-40.0	NM_177362	244216.0	Mm.41038	NM_177362	ENSMUSG00000054716	Zfp771	G630024C07Rik|Znf771	zinc finger protein 771	protein-coding	7.50786406392437	7.49562956762379	7.12901317631055	7.18986793157052	7.2715944429812	7.29380728471778	7.36142808981762	7.33342651042332	-0.029864317135495	0.874981279631779	0.952974613103639
Merged-chr13-110597673-3	chr13	110597586	110597786	+	964.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	202642.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	3.7562470064337	3.51978504556019	3.60703556963995	4.0757409967622	3.37655961854052	3.42428696915229	3.42528685265945	3.55101089441741	-1.0725080507454	0.0399132873947473	0.20151708635769
Merged-chr5-136246596-4	chr5	136246481	136246681	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1641.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	5.61004312132173	5.84879430342102	5.28091372298847	5.42785663104215	5.75301740717578	6.08732883454384	5.70756859974535	5.31100148197503	0.309171342095573	0.310533212074456	0.622616866559057
Merged-chr5-76951630-4	chr5	76951536	76951736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172146)	promoter-TSS (NM_172146)	-58.0	NM_172146	231327.0	Mm.202337	NM_172146	ENSMUSG00000029246	Ppat	5730454C12Rik|AA408689|AA675351|AI507113|C79945	phosphoribosyl pyrophosphate amidotransferase	protein-coding	7.3191806104299	7.25861332402898	7.32043927133505	7.44251560448112	7.69165863606876	7.52940767388842	7.74163964477726	7.62535635734055	0.409146688157207	0.0178372152003779	0.118494466539416
Merged-chr4-88390696-6	chr4	88390595	88390795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 35 of 43)	intron (NM_001081184, intron 35 of 43)	48231.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	5.26846370329363	5.25875275446992	4.4328188723769	4.85149402149782	5.41610216386169	5.01847302312287	4.92988105435246	4.91413862545737	0.197269473668769	0.600481759057297	0.826836656557895
Merged-chr11-54237193-4	chr11	54237065	54237265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12734.0	NM_009969	12981.0	Mm.4922	NM_009969	ENSMUSG00000018916	Csf2	CSF|Csfgm|GMCSF|Gm-CSf|MGI-IGM	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding	5.34993737822066	5.48854379608947	5.11862932983753	5.08462113249894	5.60573681186714	5.29776540887637	5.68793232126133	5.75762315584591	0.595900248717762	0.0420368072146965	0.207729651536718
Merged-chr16-11322917-4	chr16	11322831	11323031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028964)	promoter-TSS (NM_028964)	27.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	6.91450893941253	7.20777138935282	6.902223560349	7.22293614918279	6.85776396810451	7.14510149892281	7.23861924344319	6.65923234380831	-0.122557124883695	0.578739361539221	0.814949494890204
Merged-chr13-9149630-4	chr13	9149546	9149746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 8 of 17)	intron (NM_172585, intron 8 of 17)	55765.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	6.88839296565736	6.82392516138339	6.81975080333629	7.33506520715386	6.97733293198917	6.53719730583865	7.16470617907412	7.25776228801367	0.0199349987352557	0.934907453469255	0.97635719558922
Merged-chr10-41523415-4	chr10	41523298	41523498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016898, intron 3 of 5)	intron (NM_016898, intron 3 of 5)	3898.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	5.22053474077205	5.6668618390601	5.50369715227148	5.82103305618507	5.62773805192677	5.83549282262403	5.29637056579592	5.58152625602198	0.0134654525166623	0.964129404661504	0.987279399851659
Merged-chr2-130563739-4	chr2	130563655	130563855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040348)	promoter-TSS (NR_040348)	-2.0	NM_207207	99045.0	Mm.30057	NM_207207	ENSMUSG00000037740	Mrps26	AI648866|GI008|MRP-S13|MRP-S26|Rpms13	mitochondrial ribosomal protein S26	protein-coding	7.66108009031101	7.61318559214768	7.47466666480901	7.51170345620741	6.92429027769455	7.07958924437645	7.44681083182819	7.18091284645599	-0.536857258708342	0.00591259253568543	0.0536977489018756
Merged-chr17-33799458-4	chr17	33799368	33799568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-11055.0	NM_001357162	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	6.56528922770166	6.55955040658374	6.2989612311045	6.28472819811492	6.28807586582834	6.1376927913481	6.02199923827956	6.40149591423061	-0.304506414483165	0.19245749131973	0.492094682615385
Merged-chr7-120754853-4	chr7	120754770	120754970	+	993.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177697, intron 3 of 33)	B1_Mus2|SINE|Alu	15313.0	NM_177697	233813.0	Mm.389939	NM_177697	ENSMUSG00000030889	Vwa3a	E030013G06Rik	von Willebrand factor A domain containing 3A	protein-coding	5.16329346029541	5.1940876216687	4.99373461550041	5.18597313299392	5.16637771485185	5.13321410513116	5.00554781448452	5.44460526684856	0.102082377472521	0.736867564225819	0.896086114515881
Merged-chr2-122377984-4	chr2	122377866	122378066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9048.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	6.43001901835897	6.56741402238266	6.43115809217008	6.06781163326529	6.02778790501437	6.14581234581404	6.62786336556566	6.44332295313839	-0.072132985141173	0.780414444782971	0.914508092485582
Merged-chr6-113308501-4	chr6	113308402	113308602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282128, intron 1 of 13)	intron (NM_001282128, intron 1 of 13)	1365.0	NM_001282126	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	6.44821378703536	6.75197167805633	6.73612501147357	6.4959370476897	6.77143439184909	6.92487305985857	6.59822337126851	6.51403767991555	0.147879496716798	0.498016742772419	0.767428122781451
Merged-chr4-130915574-4	chr4	130915481	130915681	+	740.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	2247.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	3.85634296211485	3.38775580242668	3.45754718219096	3.38402425935728	3.33894951947367	3.51343884538631	3.65702515965831	3.71918598515645	0.10673769888067	0.837029513659024	0.938145671742126
Merged-chr11-115660565-2	chr11	115660465	115660665	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	-32270.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	3.32108236123534	3.1023841963291	3.32152803738851	3.37845728303695	3.19818526678313	3.37694676709722	3.1945666819032	3.31972560084729	-0.06821349689867	0.898765438951421	0.962303043708153
Merged-chr19-47441732-4	chr19	47441623	47441823	+	885.1333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	22688.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	4.35292992386445	4.50598984555484	4.2571106090975	4.95466344016854	4.23234983718908	4.38564600504267	4.79307076823681	4.60322039120684	-0.112423455749852	0.79057530705206	0.918840742585233
Merged-chr10-81233111-4	chr10	81232979	81233179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034895)	promoter-TSS (NM_001034895)	-84.0	NM_001034895	103406.0	Mm.158783	NM_001034895	ENSMUSG00000034949	Zfr2	2010013I23Rik|9130206N08Rik|AW045600|mKIAA1086	zinc finger RNA binding protein 2	protein-coding	6.48550834217665	6.49861865581913	6.22949562105411	6.2638827607885	6.7438493763128	6.55904408216348	6.54893971038788	6.32293758308673	0.280846181511821	0.211209323262761	0.515787529171727
Merged-chr4-141445513-4	chr4	141445412	141445612	+	829.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009541, intron 1 of 15)	intron (NM_009541, intron 1 of 15)	839.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	4.4750463704433	5.21803782518968	4.33927396033965	3.59373707350121	5.01161988335723	4.4724992584294	4.41123189357251	4.42894151118496	0.127389484479491	0.807971438680294	0.92593795364266
Merged-chr9-53692136-4	chr9	53692046	53692246	+	756.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175562, intron 1 of 1)	B2_Mm1a|SINE|B2	14086.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	4.0984938934406	3.53120733448716	3.92481677886065	3.08581388934603	3.85529146872735	3.84547896252009	3.76037279864968	3.96813136044438	0.409954354962222	0.461113704119654	0.742937471426379
Merged-chr7-132776629-1	chr7	132776529	132776729	+	710.799988	f0_balb.idr	intron (NM_212473, intron 2 of 4)	intron (NM_212473, intron 2 of 4)	287.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	3.63696057765277	3.57289046519977	3.25818210393874	3.25173215319821	2.77160331370588	2.91246307177742	2.79398535034033	2.72098920745907	-3.06673110155913	3.66166292188084e-05	0.000860978512774654
Merged-chr4-133545488-1	chr4	133545388	133545588	+	862.0	f0_balb.idr	intron (NM_010948, intron 1 of 7)	intron (NM_010948, intron 1 of 7)	539.0	NM_010948	18221.0	Mm.69	NM_010948	ENSMUSG00000028851	Nudc	SIG-92|Silg92	nudC nuclear distribution protein	protein-coding	3.93127859887825	3.78306801800122	4.51940394832749	3.89520145366773	4.13647024134376	4.15941217228129	3.80616434551776	4.33662366026666	0.168824576618083	0.719248135955599	0.887855791496547
Merged-chr4-109136981-3	chr4	109136882	109137082	+	854.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355191, exon 1 of 21)	5' UTR (NM_001355191, exon 1 of 21)	931.0	NM_001355191	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	4.19736298831579	4.334951953914	4.47425898652432	4.60711915229097	3.68316468786857	3.84679326720589	3.93993075784456	3.78448682799832	-1.664640285652	0.000167260050926285	0.00313135275246765
Merged-chr12-84034259-4	chr12	84034152	84034352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-4127.0	NM_134247	171282.0	Mm.482217	NM_134247	ENSMUSG00000052392	Acot4	B430212I04Rik|PTE-Ib|Pte1b|Pte2b	acyl-CoA thioesterase 4	protein-coding	5.47932667728991	6.02211453243014	5.64867897468809	5.87790474654095	5.53122749592772	5.68682259062472	5.67136721618175	5.81635137720303	-0.184169995146348	0.501442416514635	0.769227796661534
Merged-chr18-66471341-8	chr18	66471209	66471409	+	938.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	12705.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	3.58268151327589	3.44204378584958	3.24844368104431	3.3892542667734	3.26106798458989	3.4237281419015	3.41333017236152	3.58106187324596	0.00304785044297381	0.99529133525846	0.998283592902656
Merged-chr1-171849678-4	chr1	171849567	171849767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	9970.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	7.93969182848579	7.74699671574797	8.179412434281	8.1431013871574	8.15658035891448	8.4044853895572	8.53882919575726	8.22709505625151	0.40967734751652	0.0250238672858557	0.148542561049114
Merged-chr14-65358472-4	chr14	65358367	65358567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199029)	promoter-TSS (NM_199029)	-209.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	6.38020941999089	5.97601699821163	6.07175683228411	5.97855934901921	6.51859937326113	6.52157199223215	6.31401660124787	6.23156665038959	0.462875973462065	0.0501826142356292	0.232336951910879
Merged-chr16-30870198-4	chr16	30870101	30870301	+	993.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	211231.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	5.03670683084898	4.92628303775564	4.89889563990888	4.87411803425064	5.21044830815153	4.87917009641335	4.83882111652127	5.12886543732899	0.205241823323692	0.520116097531931	0.780546989378565
Merged-chr11-76407280-2	chr11	76407180	76407380	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023355, exon 1 of 3)	exon (NM_023355, exon 1 of 3)	137.0	NM_019818	56322.0	Mm.18803	NM_019818	ENSMUSG00000020843	Timm22	Tim22	translocase of inner mitochondrial membrane 22	protein-coding	4.49788985175103	4.33791681796522	4.53623884082721	4.24583184018926	4.32697645037206	4.27531181266018	4.18077067770176	4.24344902122331	-0.329379967356432	0.394990844906441	0.693993220517269
Merged-chr8-115678374-4	chr8	115678277	115678477	+	993.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	28517.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.10840560639512	5.49149871993787	5.17634805614882	5.65032727097426	5.23548840739731	4.93794251892351	5.15105975645145	5.26714761912717	-0.433094584264713	0.173379442382717	0.467390369995434
Merged-chr7-27979313-4	chr7	27979125	27979325	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081021)	promoter-TSS (NM_001081021)	-68.0	NM_001081021	338354.0	Mm.389873	NM_001081021	ENSMUSG00000063047	Zfp780b	B230208L21Rik	zinc finger protein 780B	protein-coding	4.3687387747247	4.26042089437184	4.41052124325646	4.2219729974903	4.496868886428	4.36370730924435	4.12458317944432	4.28025202014134	0.0539359365000045	0.889367011111977	0.958519732455951
Merged-chr1-85735918-4	chr1	85735810	85736010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177055, intron 1 of 5)	intron (NM_177055, intron 1 of 5)	696.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	7.16927077297553	6.67196799723906	6.68373277043888	6.62742556906007	6.92125438190146	6.84546903929205	7.18625199063258	6.86744930368613	0.231135676608241	0.300463200186919	0.612432455247845
Merged-chr2-167293509-4	chr2	167293430	167293630	+	966.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52993.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	5.30253647587659	5.51447214878049	5.49657547132899	5.7902696369175	5.37742788702822	4.643399264352	4.86127618652297	5.07213028689711	-0.934287421084186	0.00657503021014524	0.0580578185495507
Merged-chr1-86532554-4	chr1	86532447	86532647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5990.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	5.60451573006533	5.73372226104324	5.24879528803498	5.22385499925402	5.96897542415726	5.75368796438579	5.41235379719642	5.49343020712539	0.379295155972127	0.21438931589444	0.520145105871237
Merged-chr2-34774245-15	chr2	34774006	34774206	+	943.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022310, exon 5 of 8)	exon (NM_022310, exon 5 of 8)	2016.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	4.43138014236434	4.08407831198659	4.1073438814594	4.17242220713833	4.9073397802307	4.5626973696353	4.14139149879738	4.3875770760614	0.792263915760034	0.0568137350752851	0.249672460883109
Merged-chr17-32280709-4	chr17	32280602	32280802	+	868.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286630, intron 1 of 19)	intron (NM_001286630, intron 1 of 19)	3421.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	4.92442937011208	4.42687126421577	4.633987523413	3.90753219024056	4.52354027945174	4.3340353739893	4.41669583928435	4.25217648209293	-0.287551354179808	0.519451776965881	0.780109250414685
Merged-chr17-48285807-1	chr17	48285707	48285907	+	758.333313	f0_c57.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-14231.0	NM_001033405	328833.0	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	2.65555026991396	2.58706196237991	2.65580096192798	2.18846286926586	3.23008659975971	3.7466425202011	3.59761167295716	3.97390621216031	7.57957061104989	5.86360157796343e-14	8.02625570611268e-12
Merged-chr3-119814941-4	chr3	119814845	119815045	+	823.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31557.0	NM_019550	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	4.57510083293389	4.26543651303932	4.72842084740773	5.04672137403225	4.42115455786132	4.4358415636566	4.66967639491544	4.61272189546126	-0.362896289770912	0.361428875286425	0.666724030938332
Merged-chr10-98880909-4	chr10	98880815	98881015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-33727.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	7.51464793665262	7.48971962794288	7.40153959191478	7.59417118941127	7.56998660571423	7.61794703287136	7.41362416038375	7.28156436153556	-0.0366895266108345	0.837756262447724	0.938459467190736
Merged-chr4-53151169-3	chr4	53151080	53151280	+	954.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	8715.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	3.71821486670403	3.9748751595329	3.82015339357094	3.72306722683945	3.84662868756655	3.60421864727394	3.89675237278027	3.42274673229769	-0.290359740198536	0.548797180069449	0.797649750024352
Merged-chr10-8873793-3	chr10	8873690	8873890	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	L2|LINE|L2	12280.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.50132911828174	4.19802720050422	4.4632352415482	4.55186812793736	4.35127809623059	4.46746927918974	3.86011606597259	4.29213741865861	-0.420047998172935	0.309781911023816	0.621966790160335
Merged-chr10-116473381-2	chr10	116473281	116473481	+	746.799988	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_130644, exon 1 of 3)	non-coding (NR_130644, exon 1 of 3)	142.0	NM_021452	58802.0	Mm.440652	NM_021452	ENSMUSG00000054934	Kcnmb4	1700058G18Rik|2900045G12Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 4	protein-coding	3.00083542696593	2.89742231064199	2.94162416381103	2.77056181950414	2.98388065102428	2.92000594433361	2.80534953263524	3.16179907537746	0.341324388855361	0.569902017550457	0.8096279056665
Merged-chr11-20401017-4	chr11	20400901	20401101	+	777.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68288.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	4.18655079049431	3.89470338486491	4.01295301812723	4.21613175994041	3.92993593240769	3.93096013986075	3.7410682074889	3.80888720839988	-0.644593722337333	0.142690201643863	0.420439038904191
Merged-chr13-58401610-4	chr13	58401540	58401740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_031761)	promoter-TSS (NR_031761)	477.0	NM_001360494	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	6.81427948731605	6.74328144138584	6.75660514442351	6.57244900351258	7.11198318089876	7.25084468998349	7.12866445934016	7.31297176779139	0.677662333840589	0.000427127699260999	0.00678324910881273
Merged-chr13-10251957-4	chr13	10251864	10252064	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 1 of 4)	L1MC1|LINE|L1	108839.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	5.04135933107734	4.78506161017493	5.29848527160163	5.45902742158595	5.20744860657808	5.14618054505122	5.38215619180957	5.17324294992367	0.0775649112910194	0.813236671244156	0.927857767644014
Merged-chr5-134452505-4	chr5	134452356	134452556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081462, intron 1 of 29)	intron (NM_001081462, intron 1 of 29)	3806.0	NM_001081465	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	6.21719145590882	6.68235709503215	6.97598755219613	6.77269817790529	6.88938948728608	6.61390691995847	6.73592354367919	6.50248077000929	0.00783731602095367	0.973989235798163	0.990705361897703
Merged-chr15-96654931-4	chr15	96654818	96655018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12005.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	6.14628158278021	6.16515842791324	6.48978971927503	6.57863837517839	6.27030504615179	6.21325366002936	6.94434777471719	6.91728058975916	0.382329783035367	0.165445799075838	0.456120385697813
Merged-chr18-24020420-4	chr18	24020330	24020530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357447)	promoter-TSS (NM_001357447)	-60.0	NM_001357447	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	7.43538056837391	7.67428717329161	7.61400050331047	7.64566037432016	7.67060832503329	7.71981354913821	8.06556334120628	7.47097384949918	0.197568072878271	0.305253879698103	0.617695035856713
Merged-chr5-33336105-2	chr5	33336005	33336205	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021500, intron 1 of 8)	CpG	533.0	NM_021500	59003.0	Mm.138617	NM_021500	ENSMUSG00000079562	Maea	1110030D19Rik|EMP|Gid9	macrophage erythroblast attacher	protein-coding	3.69855096733498	3.3136817293013	3.59678032917997	3.43314686471582	3.63447483873125	3.71420736098634	3.58227622558491	3.64684059443621	0.431206967919899	0.374196787387873	0.677586056340113
Merged-chr1-87035962-4	chr1	87035861	87036061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172157, intron 15 of 21)	intron (NM_001172157, intron 15 of 21)	53967.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	6.30094409697209	5.94732031291492	6.77400526843097	6.95913155537694	5.9164845378553	5.9385155514849	5.98172429411718	6.38667220269743	-0.745859213804386	0.0128185874733331	0.0942012716208603
Merged-chr4-99100918-4	chr4	99100800	99101000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026082, intron 1 of 47)	intron (NM_026082, intron 1 of 47)	20015.0	NM_001290636	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	5.18481161178736	5.14628296394609	5.24931299656105	5.65582326441089	5.35602692490359	5.11316208124728	5.16038102647135	5.30621839569783	-0.1919446813812	0.541895878854688	0.793491190310592
Merged-chr6-113039801-1	chr6	113039701	113039901	+	782.0	f0_balb.idr	Intergenic	RLTR1B|LTR|ERV1	-6501.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	3.26372943971097	2.92309894419179	3.58693911510867	3.43635540106121	3.40362616544671	3.49568668113031	3.47347254808082	3.26250755324348	0.289813959823884	0.613731466806151	0.833487638457432
Merged-chr15-44427515-4	chr15	44427425	44427625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175009)	promoter-TSS (NM_175009)	-586.0	NM_175009	223527.0	Mm.291828	NM_175009	ENSMUSG00000022338	Eny2	1810057B09Rik|6720481I12|DC6|Ey2	ENY2 transcription and export complex 2 subunit	protein-coding	6.02695454254098	6.03276632190328	6.3831180579633	6.17639276288323	6.04409438624226	6.06796710779119	5.97559732879169	5.86279172710442	-0.265129344219996	0.268633259224857	0.580260491970544
Merged-chr11-59163527-4	chr11	59163524	59163724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001270791, exon 1 of 2)	exon (NM_001270791, exon 1 of 2)	121.0	NM_001270791	216792.0	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	7.21823974728057	7.23636888011575	7.62168335779004	6.98379108532571	7.18159552743499	7.51202879107587	7.12711781977294	7.32063057751947	0.0206219278227315	0.923936692143537	0.971874776059645
Merged-chr10-18931630-3	chr10	18931495	18931695	+	874.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80368.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	3.76048028635369	3.41373878318285	3.47980514059046	3.05332248579926	3.71685096601778	4.07492765398536	3.93058938831004	3.85616314648248	1.43116980638695	0.00615644682878971	0.0552752531151469
Merged-chr15-79327484-4	chr15	79327394	79327594	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016915, intron 1 of 15)	intron (NM_016915, intron 1 of 15)	877.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	4.79505206706962	5.03024127100674	4.75850333678944	4.60471232580719	4.82990835468817	4.81451123359452	4.7361141861719	4.67736827870584	-0.0573814872122849	0.866627347980368	0.950019210311976
Merged-chr12-111814018-4	chr12	111813902	111814102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028875)	promoter-TSS (NM_028875)	-123.0	NM_028875	74335.0	Mm.19082	NM_028875	ENSMUSG00000021287	Xrcc3	-	X-ray repair complementing defective repair in Chinese hamster cells 3	protein-coding	8.98261008117784	9.1751320263282	9.26998504011476	9.14990950927009	9.19366240830315	9.28046913431049	9.30282262795411	8.84357272907488	0.0238473039502229	0.884009243029998	0.956390337098447
Merged-chr17-73949774-4	chr17	73949655	73949855	+	900.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	441.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	5.83524008060555	5.81795347388382	5.73951869778423	6.22106692775763	5.64475103804994	5.93909027548488	5.43705197155826	5.85518089722455	-0.343909331598052	0.221401712303869	0.529463056908312
Merged-chr15-6334987-4	chr15	6334871	6335071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	35182.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	6.07767279522906	5.33330897928099	6.78768741951456	6.94106678660289	5.80994628601116	5.61942393350806	6.00448107953183	6.17592525481086	-0.7759264469448	0.160752715826239	0.449048999638783
Merged-chr11-70432491-4	chr11	70432372	70432572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271360)	promoter-TSS (NM_001271360)	-108.0	NM_001271360	216869.0	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872|Arr3	arrestin, beta 2	protein-coding	8.35868856813766	8.47425824773828	8.21101842184241	7.97535132257151	8.60040273646378	8.64652683692882	8.53811898839265	8.33279203972308	0.34649725705745	0.0516967266074192	0.236362908323758
Merged-chr1-181232821-4	chr1	181232720	181232920	+	981.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20842.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	5.01758011588221	4.72873655735588	5.19881110226015	4.45323320845983	4.83878147532292	5.01996393624057	5.0863177274949	4.64258012304457	0.0867923676823891	0.815943499477384	0.929114885045365
Merged-chr7-102223791-6	chr7	102223665	102223865	+	739.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111938, intron 2 of 4)	PB1D10|SINE|Alu	737.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	2.76040612845782	2.97025202275309	2.68514073111213	2.84108733450445	2.86947372654249	3.55691317258939	2.95446127778842	3.08460098288253	1.30581594486569	0.0430275561584715	0.211034090773203
Merged-chr2-112239721-4	chr2	112239628	112239828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207206)	promoter-TSS (NM_207206)	-113.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	6.13888508468584	6.17191182003165	6.39868655982248	5.89461351695027	6.02658842313741	6.33615723104757	6.27992894829209	6.37730565566025	0.163133281188432	0.509341647154128	0.773960180154769
Merged-chr7-141016987-4	chr7	141016909	141017109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033632)	promoter-TSS (NM_001033632)	-117.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	6.82139454178981	6.91962554436285	7.3077359972872	7.35981092355848	6.97245043226024	7.05817760396146	7.26120577194873	7.38055097837277	0.0564010154161241	0.799267743279152	0.922485593889919
Merged-chr2-150829960-5	chr2	150829817	150830017	+	778.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 19 of 19)	intron (NM_153781, intron 19 of 19)	12653.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	3.34128672836222	3.61312305742653	3.62342778670439	3.6645542988418	3.47199551350637	3.45442427151486	3.50443306546966	3.67086353339108	-0.153964632790655	0.756571364769004	0.904386007179465
Merged-chr2-144280178-1	chr2	144280078	144280278	+	669.5	f0_balb.idr	3' UTR (NM_001289630, exon 5 of 5)	3' UTR (NM_001289630, exon 5 of 5)	9274.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	3.32882955884941	3.32238713078473	3.3881732218766	3.79336602565624	3.27871889829032	3.50169824150886	3.37565022835537	3.54831859377494	-0.218308826785907	0.688238896832774	0.87268021244394
Merged-chr11-54808361-4	chr11	54808246	54808446	+	951.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11573.0	NR_040284	432562.0	Mm.406948	NR_040284	ENSMUSG00000086789	Lyrm7os	Gm12228	LYR motif containing 7, opposite strand	ncRNA	4.99182714048943	4.67713527458787	4.67444466672686	4.94803797946135	4.87474343933647	4.58744731233232	4.6920880320163	4.71095233634918	-0.226784092320213	0.509986502973272	0.774423545998518
Merged-chr1-92225486-4	chr1	92225402	92225602	+	836.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45161.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	3.87855454880893	4.13018470590129	4.24409163740357	3.8440120356424	3.83632767271711	3.88951936186597	4.01100243341909	4.07213629905151	-0.200128826777974	0.649130999276665	0.85256823714495
Merged-chr12-69184645-4	chr12	69184525	69184725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025589)	promoter-TSS (NM_025589)	467.0	NM_146035	217664.0	Mm.206642	NM_146035	ENSMUSG00000043998	Mgat2	AA407964|CDGS2|GLCNACTII|GNT-II|GNT2	mannoside acetylglucosaminyltransferase 2	protein-coding	5.99724029203423	5.92440865693009	6.51438161323757	6.01598429919646	6.07565506792678	5.76645017631957	6.01070529789248	6.09951516776979	-0.198198011104684	0.45038546688296	0.735308664325478
Merged-chr14-55781428-4	chr14	55781262	55781462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080435, intron 4 of 25)	intron (NM_080435, intron 4 of 25)	2710.0	NM_080435	104110.0	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	5.49877123379975	5.71741458868231	5.47244321554258	5.5090148418285	5.42412337084924	5.23135494770684	5.17105912465327	5.46861052297403	-0.381510159783259	0.176107501181752	0.471075359571741
Merged-chr16-91365920-4	chr16	91365792	91365992	+	697.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6891.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	3.79879407267523	4.05349609956608	4.16457959763646	3.80488882666017	3.73636999601653	3.86497371887617	3.7840274593818	3.74331520631798	-0.509069735047289	0.262158560108974	0.574100843086496
Merged-chr2-35755961-3	chr2	35755859	35756059	+	939.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029774, intron 9 of 9)	intron (NM_029774, intron 9 of 9)	59227.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	3.95683950923793	3.8867105081175	3.95741981796936	4.12314747040911	3.92254550528328	4.30585119183812	3.78734310372121	3.68565138014395	-0.128662656790262	0.778400646475471	0.913734910277541
Merged-chr9-118662048-2	chr9	118661948	118662148	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 7 of 27)	ORR1E|LTR|ERVL-MaLR	-49644.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.255922453442	2.92828693785626	3.01291166914764	3.28531968131959	3.28725804669799	3.36854279515086	3.18773490170403	3.19797349531514	0.464224086042349	0.413273434980366	0.708282525004032
Merged-chr14-33175332-4	chr14	33175241	33175441	+	995.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 1 of 58)	intron (NM_001146022, intron 1 of 58)	9725.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	5.63283335193666	6.08571121105366	5.74114503703505	5.85448674397249	6.09037872595961	5.86592538211885	5.42697288243808	6.33868113071075	0.21249023083016	0.473137925040339	0.751058973381942
Merged-chr2-35338619-3	chr2	35338557	35338757	+	824.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1648.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	3.74765572848122	4.10697177909237	3.85724376148492	3.9880845230938	4.2093511626242	3.92341491853979	3.89249475990975	3.90630525483122	0.166035542321324	0.707318883820768	0.882431570643223
Merged-chr4-133238133-4	chr4	133238086	133238286	+	830.483337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2632.0	NM_016693	53608.0	Mm.36640	NM_016693	ENSMUSG00000028862	Map3k6	Ask2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding	4.00813801323187	3.4179752893331	3.42909578469786	3.54505612944407	3.52619498412387	3.71853496376587	3.41678418093347	3.59842212680482	-0.160465876681393	0.75665027040353	0.904407301834382
Merged-chr10-9876026-4	chr10	9875958	9876158	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081344, intron 2 of 25)	MTC|LTR|ERVL-MaLR	24982.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	5.34875402594894	4.96387185830248	5.40503460707767	5.48785756706587	5.22752909665779	4.97180110718927	5.23575490123762	5.22745618445984	-0.276305925813268	0.373754487440408	0.677211638825943
Merged-chr3-9500121-2	chr3	9500021	9500221	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 2 of 8)	MIR3|SINE|MIR	97043.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	3.21672256680034	3.00133940286217	3.04802166262693	3.33108715304382	3.08306805032551	2.80983169856929	2.9126967871402	3.16154163833639	-0.653554227866886	0.284294008881204	0.596222858869618
Merged-chr9-65565048-4	chr9	65564916	65565116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 2 of 5)	RMER15|LTR|ERVL	15071.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	7.13054315864199	6.82993863450068	7.09866528645992	7.1034957333538	6.44028871421465	6.67018530647277	6.59515945458706	6.92638406488246	-0.542003494005113	0.0111838624705314	0.0854045860733781
Merged-chr4-106651023-4	chr4	106650926	106651126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285784)	promoter-TSS (NM_001285784)	-43.0	NM_001285783	230577.0	Mm.134029	NM_172272	ENSMUSG00000043572	Pars2	BC027073	prolyl-tRNA synthetase (mitochondrial)(putative)	protein-coding	6.99710172760649	7.03278138127555	6.49850599306512	6.87067429398242	7.15430668068753	7.07116553456104	7.39972629952042	6.9027041408541	0.382665670710458	0.0808020466548628	0.308370000474317
Merged-chr1-87608562-4	chr1	87608460	87608660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11752.0	NM_001110193	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	5.44708442275893	5.43908168319605	5.29525605900212	5.53898139724514	5.39698074286222	5.70531898880167	5.60655590878047	5.63110508159034	0.236842553683414	0.387887905578029	0.688726934413767
Merged-chr10-18195262-3	chr10	18195205	18195405	+	823.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195036, intron 3 of 20)	intron (NM_001195036, intron 3 of 20)	15585.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	3.38147873945484	3.30959078975969	3.48735276839012	3.65452341232594	3.37575656788583	3.31597476866212	3.13140087025297	3.20401926590882	-0.751664099805223	0.167564701702431	0.459317129528914
Merged-chr10-15321739-1	chr10	15321639	15321839	+	865.75	f0_balb.idr	Intergenic	Intergenic	-470038.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	4.52158403038267	4.07074752211781	4.3356501471033	4.85844381161204	3.7220100670533	3.85500985417823	3.77947564961741	3.8511369196862	-1.85862965733306	7.50860584020426e-05	0.00159042612880575
Merged-chr8-13669731-3	chr8	13669642	13669842	+	789.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	7845.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	3.59305037966548	3.79605373828741	3.95624426006408	3.94151176263081	3.83643943388744	3.58368051382646	3.79741953962992	3.99804389945291	-0.063838565877997	0.89113677506466	0.959261758398274
Merged-chr9-113709105-4	chr9	113708986	113709186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164677)	promoter-TSS (NM_001164677)	-827.0	NM_011052	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	6.75280787119691	6.39342378502724	6.4485205503585	6.91692771803178	6.75614103187308	6.74680035817522	6.98717669383076	6.6907922974061	0.196819358360809	0.389450302497399	0.68974080819762
Merged-chr5-112283719-4	chr5	112283635	112283835	+	944.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	7044.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	4.54985722301867	4.04618583733597	4.34404279046379	4.2487231505296	4.57210610956403	4.16982386390238	4.5292421720678	4.87188940208863	0.607112867345357	0.135241113648987	0.409381349004647
Merged-chr5-130089931-6	chr5	130089855	130090055	+	929.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130476, intron 1 of 5)	intron (NM_001130476, intron 1 of 5)	10585.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	3.73125526248144	4.00648315560917	4.04837433986308	4.14014012385506	3.93599667243269	3.96697024130191	3.98372251272182	4.33678907971147	0.166319611739252	0.706464590867467	0.882046011460366
Merged-chr6-28261015-4	chr6	28260931	28261131	+	921.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081678, intron 1 of 5)	CpG	570.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	4.39558481902149	4.35462019860711	4.66156625437639	4.12548997332646	4.40618031536771	4.01133012816637	4.56924812513703	4.35064687878228	-0.0745181458432528	0.856864317476068	0.946159157665131
Merged-chr7-110385663-4	chr7	110385557	110385757	+	938.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	163954.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	4.56999694779956	4.55406795862134	4.72715956358924	4.94812745684692	4.8185056283895	4.47349823321753	4.77562976952123	4.38995477168941	-0.187141506219404	0.615860283415898	0.83467255086626
Merged-chr1-20940284-3	chr1	20940189	20940389	+	752.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028829)	TTS (NM_028829)	-11337.0	NM_027974	71877.0	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	3.56701235717695	3.52575375622019	3.80810349911155	3.74930477435395	3.40593983336554	3.3150575273043	3.6537034208782	3.26981014697187	-0.83093015643319	0.108627673559883	0.363854389177915
Merged-chr3-65533193-4	chr3	65533059	65533259	+	952.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178892, intron 2 of 5)	intron (NM_178892, intron 2 of 5)	-3745.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	3.95044318369419	4.57013231352219	4.16797563397746	4.58918494797596	4.57707524765089	4.52597448525736	4.29116661431187	4.21461381345222	0.121085225217717	0.777076650422899	0.913034573074491
Merged-chr3-100442680-4	chr3	100442594	100442794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	16289.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	6.52186884665239	6.21382156569564	6.48854925408945	6.88643624835107	6.90532354670747	6.57599284367647	6.77590703248021	6.99355687389203	0.367131666186677	0.129397065968867	0.400360889731452
Merged-chr3-101604713-4	chr3	101604602	101604802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144900)	promoter-TSS (NM_144900)	5.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	8.19313624877159	8.5299924100365	8.59119557063359	8.50522849354013	8.44404571455284	8.41498195037501	8.6390317846923	8.33572796761768	-0.00310197057199225	0.985154321973208	0.994598605754949
Merged-chr17-79615276-4	chr17	79615176	79615376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201361, intron 1 of 10)	CpG	376.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	5.70603044351516	5.27048376046471	5.90555451465617	5.65925520251497	5.31298581728846	5.49577565743474	5.60462710299798	5.52351541578239	-0.288936575141792	0.317780992465503	0.629652182463903
Merged-chr13-119428891-4	chr13	119428794	119428994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145457)	promoter-TSS (NM_145457)	-8.0	NM_145457	218693.0	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	6.81206509289953	6.60940999512513	6.93509094848245	7.0642928463858	7.03507209414426	6.99009891150776	7.15474232661502	6.64156371742649	0.134171440371276	0.542011947970898	0.793628495939697
Merged-chr2-124622207-4	chr2	124622091	124622291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	MTE2a|LTR|ERVL-MaLR	11895.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	8.03731886881313	8.14201916238866	8.46626266539906	8.31804198937305	8.04961900880817	7.78871265826132	8.03331108790224	8.24277737117257	-0.272174558251736	0.134339680191234	0.407942154280369
Merged-chr6-108784969-4	chr6	108784871	108785071	+	948.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026011, intron 1 of 6)	intron (NM_026011, intron 1 of 6)	1912.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	4.86997975047198	4.95386456810662	4.37941374384608	4.99674914229711	4.78461942967189	4.86181929453523	4.77785202858321	4.16224613271221	-0.319577707427697	0.423031901958846	0.714964864073543
Merged-chr1-107516089-4	chr1	107515983	107516183	+	798.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011111, intron 2 of 7)	intron (NM_011111, intron 2 of 7)	4573.0	NM_011111	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	3.71407584938375	3.8281967278683	3.76597163834898	3.79610763518771	3.7931488253969	3.60069271266525	3.79930863948457	3.65909573308672	-0.175230834537987	0.700409426432914	0.879143023278345
Merged-chr10-23177503-8	chr10	23177346	23177546	+	927.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010167, intron 3 of 18)	intron (NM_010167, intron 3 of 18)	172444.0	NM_001347372	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	3.485449955151	3.62231504529908	3.54006025428884	3.78566924177452	3.17243035510404	3.543877323585	3.47242451406139	3.36866768982329	-0.79842069479312	0.126685971791452	0.395707424352456
Merged-chr1-167392905-3	chr1	167392808	167393008	+	780.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025569, intron 1 of 5)	intron (NM_025569, intron 1 of 5)	889.0	NM_025569	66447.0	Mm.218286	NM_025569	ENSMUSG00000026688	Mgst3	2010012L10Rik|2010306B17Rik|2700004G04Rik|AA516734|GST-III	microsomal glutathione S-transferase 3	protein-coding	3.45813158557591	3.18153887674284	2.91283361076573	3.22914426007827	3.10979793941776	3.29574052752038	3.34186458670223	3.45654371945614	0.343849046128457	0.547026658653811	0.796677385446651
Merged-chr5-136135581-2	chr5	136135481	136135681	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347492)	promoter-TSS (NM_001347492)	493.0	NM_027891	71735.0	Mm.425292	NM_027891	ENSMUSG00000029703	Lrwd1	1200011O22Rik|AU042569|AW548074|Orca	leucine-rich repeats and WD repeat domain containing 1	protein-coding	3.32175159820921	3.37512759785647	3.65714942044534	3.50691876860714	3.42479510927909	3.72451045421318	3.48679177091386	3.65495886603861	0.326794798722008	0.514226807238168	0.776934259778089
Merged-chr1-128016321-4	chr1	128016223	128016423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 7 of 20)	intron (NM_001285945, intron 7 of 20)	86148.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	7.8612657032722	7.8888611987736	7.59322943433451	7.74206489604976	7.90625457853011	7.85010402345884	7.93657140452346	7.86458832027427	0.148758051803676	0.367086904115147	0.671471106644306
Merged-chr15-39840850-3	chr15	39840749	39840949	+	923.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164466, intron 4 of 9)	intron (NM_001164466, intron 4 of 9)	16621.0	NM_001164466	64705.0	Mm.275974	NM_022722	ENSMUSG00000022304	Dpys	1200017I10Rik|1300004I01Rik|DHP|DHPase	dihydropyrimidinase	protein-coding	3.79142912522891	4.0926565931044	3.62980983662263	3.96121584477262	3.49621900473314	3.6258395591954	3.72510816536136	3.93351362307493	-0.553699524186105	0.252821187356517	0.564053388128433
Merged-chr10-111118551-4	chr10	111118457	111118657	+	871.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-46245.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	4.09550755135029	4.17094132736557	3.99565181231341	4.15425361876272	4.54909008749408	4.00863870566125	4.21456357705954	4.14105439137541	0.372321007399441	0.372223965850524	0.676099595682082
Merged-chr4-99194698-4	chr4	99194612	99194812	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175029, intron 1 of 10)	intron (NM_175029, intron 1 of 10)	565.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	4.88286927869351	5.1223823886676	5.286956565624	5.29105385475329	5.18274041886223	4.97952497436432	5.46915456338493	5.09694761312564	0.0592649509266576	0.851930672464335	0.944203374730843
Merged-chr14-77905962-4	chr14	77905851	77906051	+	814.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 1 of 11)	intron (NM_029495, intron 1 of 11)	1712.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	3.7874907799592	3.17635762752111	3.33611491863884	3.63863272009521	3.6711164180389	3.85985895294508	3.67338670402778	3.92112974905824	0.829994177520164	0.113995563107346	0.373450486813086
Merged-chr17-34605808-4	chr17	34605719	34605919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163379)	promoter-TSS (NM_001163379)	-42.0	NM_001163379	55979.0	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	6.70492701137435	6.8122187890867	6.35351766778235	6.13778722809106	6.97039200035007	6.72732907225143	6.86093904146728	6.64137369388084	0.420534316806606	0.084652662505641	0.316617519128201
Merged-chr19-29251365-4	chr19	29251270	29251470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008413)	promoter-TSS (NM_008413)	-433.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	7.84267962995882	8.32460729625425	7.91632887544525	7.65241389659741	7.78230353442275	8.2334577504972	7.62228452949353	7.13935644259012	-0.264390509189199	0.299294743878327	0.611562066856898
Merged-chr1-120533117-2	chr1	120533023	120533223	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28099.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	3.58139778696647	3.78592584469024	3.58184167701215	3.76484106607245	4.13266658938312	3.63688022143712	4.09640227126546	3.80046313509895	0.719658973249043	0.127449459955463	0.397290229927736
Merged-chr8-123750452-4	chr8	123750336	123750536	+	929.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16478.0	NR_040702	234863.0	Mm.246601	NR_040702	ENSMUSG00000110599	6030466F02Rik	-	RIKEN cDNA 6030466F02 gene	ncRNA	4.49783688982257	5.66950614868641	5.34077368698405	4.65828606965504	4.47836068938352	4.72735794197088	4.73319542976953	4.11729284356858	-1.20975892637621	0.00810525229961367	0.0678334807094887
Merged-chr2-132578214-4	chr2	132578115	132578315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291052)	promoter-TSS (NM_001291052)	33.0	NM_001291050	74182.0	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	8.18867296099557	8.4347135797613	8.25584537247763	8.22950181644291	8.35047555169125	8.63270469936513	8.46990033455601	8.45998016545913	0.251529185146162	0.111537834425191	0.369056876001799
Merged-chr2-152414809-4	chr2	152414698	152414898	+	881.582153	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289738)	promoter-TSS (NM_001289738)	246.0	NM_175126	67917.0	Mm.391810	NM_175126	ENSMUSG00000074682	Zcchc3	2810406K24Rik	zinc finger, CCHC domain containing 3	protein-coding	4.93879834795468	4.20153700360151	4.09198720224274	4.55850971126494	4.49418220894328	4.21864864218647	4.27499270747498	4.50584749851688	-0.247465513310883	0.563864805495714	0.806501535094334
Merged-chr11-6436638-2	chr11	6436538	6436738	+	786.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029938, intron 2 of 4)	B3A|SINE|B2	7805.0	NM_029938	77605.0	Mm.27624	NM_029938	ENSMUSG00000041126	H2afv	C530002L11Rik|H2a.z-2|H2av|Tg(Wnt1-cre)11Rth|Wnt1-Cre|Wnt1::Cre|Wnt1cre	H2A histone family, member V	protein-coding	2.86242676985007	2.85946596823318	2.52995375633684	2.57674017584521	2.8218726449617	2.84621194439211	2.79250317672456	2.80122376182176	0.495468142262041	0.440329816934539	0.727741310566664
Merged-chr16-16526347-4	chr16	16526232	16526432	+	887.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	1079.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	3.73330841789533	3.75674011381136	3.90216598683406	4.07811771795989	4.21395962982342	4.1269123320657	4.03383130111897	4.34069423678438	0.768782182473156	0.079198835484062	0.304538728072237
Merged-chr18-77944887-4	chr18	77944788	77944988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 1 of 43)	L1MC4a|LINE|L1	6421.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	5.69612863387248	5.58541628116792	5.59153044510858	5.35893806422213	5.81557137363496	5.89704226840772	6.14370473675457	5.58759244222717	0.540401839650577	0.0476476304735999	0.225110227630451
Merged-chr2-113397889-4	chr2	113397800	113398000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-43164.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	6.77625524537116	6.73534177936675	6.61181163287385	6.76688552852774	6.88554685548738	6.80464332939234	6.31157498530859	7.03830726902027	0.0902401605115908	0.69208694508103	0.874769982197176
Merged-chr7-101971259-5	chr7	101971217	101971417	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133947, intron 1 of 24)	intron (NM_133947, intron 1 of 24)	1474.0	NM_133947	101706.0	Mm.27259	NM_133947	ENSMUSG00000066306	Numa1	6720401E04Rik|AA764025|AL022610|AU014979|NuMA	nuclear mitotic apparatus protein 1	protein-coding	4.33393064673318	3.99129654834762	4.10492723923488	4.30320271823447	4.60428144179343	4.00967485107329	4.27261294117282	4.45190227759787	0.404142788169704	0.333286907730088	0.644087445843829
Merged-chr6-51544571-4	chr6	51544432	51544632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127348)	promoter-TSS (NM_001127348)	9.0	NM_001127348	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	7.29440932946244	7.61007800375705	7.15182335166618	7.10587982740123	7.52430704598648	7.47262630603706	7.19512640836541	6.87297460011112	-0.00937639479307291	0.967124870783288	0.988455138025123
Merged-chr12-86079541-4	chr12	86079449	86079649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009368)	promoter-TSS (NM_009368)	-508.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	6.39212876590016	6.23403766542682	6.31998104023595	6.34101379210468	6.50490102422474	6.56926546891234	6.72641818875294	6.38868798561274	0.336637489743436	0.117450357402061	0.37901795300908
Merged-chr18-38246167-3	chr18	38246064	38246264	+	775.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015475, intron 1 of 3)	intron (NR_015475, intron 1 of 3)	4034.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	3.6820074744202	3.66161859079957	3.73093452357333	3.97038436931444	3.08125655784936	3.32573287211472	3.51154448864241	3.46653113765938	-1.46162452587784	0.00695955410329255	0.0606433765671008
Merged-chr7-80584227-4	chr7	80584121	80584321	+	855.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49102.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	3.85414101525894	4.12368079406201	4.00961001990884	3.81920078794403	4.17789212463143	4.2279988008897	4.039818422789	4.00723126880791	0.449043018837573	0.284423463436687	0.596317458143151
Merged-chr15-83415531-3	chr15	83415434	83415634	+	897.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	17316.0	NM_011862	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	4.12749110719432	4.30088913609442	3.95078955044691	4.29533907773054	3.43599338926622	3.55084676369268	3.67389731339694	3.6266706659808	-1.87204687081542	0.000109793117927687	0.00219459824234059
Merged-chr1-191351267-4	chr1	191351172	191351372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_144880)	TTS (NM_144880)	25307.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	5.84548459112348	5.97467424890565	6.23782803134319	5.89691242751989	6.07138587678895	6.1147265415731	5.81681956734119	5.68863883338466	-0.0813775062337323	0.752548416944589	0.902553434256667
Merged-chr11-46454868-4	chr11	46454762	46454962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134250)	promoter-TSS (NM_134250)	-69.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	6.51222208281334	6.87786751154292	7.38711485557148	6.91728326761231	6.10244754794046	6.508914489247	6.33607538963819	6.4915169496218	-0.860885050978882	0.000746152204676226	0.0106518988721719
Merged-chr14-27116819-4	chr14	27116726	27116926	+	971.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27167.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	5.63140493617049	5.83694634752112	5.65586601978775	5.58842149472618	5.05652865682525	5.0199343513285	5.15612431728455	4.7418735326578	-1.22090645945087	4.87915218415034e-05	0.00110850039360242
Merged-chr8-106415330-4	chr8	106415220	106415420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011764)	promoter-TSS (NM_011764)	-19.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	7.6750261703425	7.56508326212914	7.44451353786877	7.56473403298448	7.52798484856773	7.59196303177598	7.68656963931312	7.54264139428481	0.0288891655685968	0.864398747155466	0.949154442462998
Merged-chr11-43681861-4	chr11	43681751	43681951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164231)	promoter-TSS (NM_001164231)	-147.0	NM_027557	70802.0	Mm.397449	NM_027557	ENSMUSG00000044950	Pwwp2a	4631424J17Rik|AI891583|AU024105|D930040F23Rik	PWWP domain containing 2A	protein-coding	9.14091249263596	9.13801176836668	9.12275752101039	9.23269560616857	9.18436918329984	9.27413257578302	9.37598592295712	9.02189381139145	0.0726557133356233	0.619833336648696	0.836873177968428
Merged-chr2-166683130-4	chr2	166683038	166683238	+	862.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	30694.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.44656524164624	4.39724883406218	4.52602317628525	4.17808114998207	4.41482025015499	4.3034331338877	4.25491514550253	4.48433827354709	-0.0193027234460571	0.959895548662105	0.985662310124408
Merged-chr8-46932068-4	chr8	46931952	46932152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D5|LTR|ERVK	-54835.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	5.83539805061468	6.27982263661717	5.77039108886796	4.53015263846888	5.49538761881648	5.16976979219997	5.57242376238436	5.2081759479516	-0.634035628987436	0.129914605124578	0.401218710433729
Merged-chr11-116019354-6	chr11	116019221	116019421	+	971.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5183.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	4.24428352982799	4.58017562901049	3.94605630302204	3.72058023794843	4.37075370330563	4.69235788457372	4.13422955713534	3.76551175160329	0.29061642215218	0.564186923722364	0.806599371831898
Merged-chr1-56973257-4	chr1	56973167	56973367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024325, exon 1 of 1)	non-coding (NR_024325, exon 1 of 1)	1798.0	NR_024326	329160.0	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA	6.6511337571286	6.11289894285144	6.91991534249967	6.25706837960749	6.05197638217744	6.14970462040032	6.27852474435829	6.41370016830203	-0.42733766621218	0.113383044738547	0.37231881212317
Merged-chr7-97211319-4	chr7	97211211	97211411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	114653.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	7.25712975214027	7.41208615500438	7.23709652859385	7.27240563507399	7.00131632585695	7.30179284492518	7.10070420903711	6.86002665780545	-0.30764029352472	0.109233130435437	0.364994131596279
Merged-chr8-119840607-4	chr8	119840494	119840694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028071)	promoter-TSS (NM_028071)	-15.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	8.12825516966441	8.37310887305903	8.01767745463608	7.89455018065639	8.37012052666474	8.28822638775652	8.36610181398464	8.0987629620864	0.224535707227957	0.207620347134257	0.511639962909199
Merged-chr7-19844758-4	chr7	19844662	19844862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7241.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	7.41016428617556	8.12800742040396	7.69458908106132	7.10852670360011	7.68041067864817	7.60872229789359	7.27150974986405	6.98599438868088	-0.290763809498091	0.275313031950651	0.58708236946753
Merged-chr10-127587895-4	chr10	127587800	127588000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 15 of 88)	intron (NM_008512, intron 15 of 88)	33248.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	7.13608751460499	6.91715863498767	7.31993855564392	7.16643760611551	6.79426302470323	6.62924978953567	6.80491146181634	6.79202492135739	-0.53442685934762	0.00750254269605651	0.0641161587900836
Merged-chr3-61344717-4	chr3	61344607	61344807	+	974.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-19800.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	5.45493190416696	6.40371410155161	5.54408612603038	5.2300144336494	5.95103931464489	6.06453497844477	5.5711757706859	5.10631164423458	-0.0293494171238864	0.939398195724877	0.978079459562065
Merged-chr7-31195504-3	chr7	31195393	31195593	+	802.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	33135.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	3.90940361578493	4.17388099166457	3.95943032261133	3.99384489787203	3.94954884286434	3.68336039473795	3.84305213393115	4.13740760820897	-0.266625956897795	0.546910384671275	0.796638012378211
Merged-chr9-98296655-4	chr9	98296575	98296775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357446, exon 1 of 4)	5' UTR (NM_001357446, exon 1 of 4)	105.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	7.43272941746644	7.55716654257443	8.11361919136405	7.38089142102694	7.60465093727666	7.75357765085152	7.64989540149514	7.7225181303225	0.0439028001678581	0.837205387563438	0.938189376728559
Merged-chr10-8881958-4	chr10	8881898	8882098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	4072.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	7.90430558115401	8.10602559262433	8.35661818046755	7.79299587165645	8.02492722071222	7.91281271037129	7.73823272014494	7.77069272190983	-0.234207184812817	0.223980704879838	0.53210045864795
Merged-chr9-78113279-4	chr9	78113175	78113375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019987)	promoter-TSS (NM_019987)	37.0	NM_019987	56542.0	Mm.288719	NM_019987	ENSMUSG00000009828	Ick	2210420N10Rik|AI848300|Mrk	intestinal cell kinase	protein-coding	7.15982240052466	6.99675272094478	7.00848213450488	7.29161571898945	7.1826721153291	6.63255736754091	7.09163578557488	6.84410981328723	-0.222583124838834	0.300343817529237	0.612422387893833
Merged-chr18-38440879-2	chr18	38440779	38440979	+	958.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	21972.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	2.81516688356229	2.55074363697876	2.61647813216284	2.94443049573003	2.58120056158816	2.85922204589249	2.86459976258298	2.9862520171696	0.361317048500141	0.594771127833024	0.823594228119503
Merged-chr9-74952916-4	chr9	74952831	74953031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113283)	promoter-TSS (NM_001113283)	51.0	NR_153342	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	7.39223681940681	7.44535753374197	7.50965723307557	7.16534453207891	7.70831861694719	7.6399028002306	7.90438913374751	7.49520367302759	0.427327174525075	0.0231372537204168	0.140904053949824
Merged-chr13-47231277-4	chr13	47231152	47231352	+	965.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 4 of 7)	intron (NM_146042, intron 4 of 7)	37249.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	5.77220866047006	6.02370159955601	6.06329105947629	6.25072838753563	4.97790293905166	5.22485130227214	4.88705945987008	5.59455116705741	-1.46351066833465	2.0703935097958e-06	6.75073475188984e-05
Merged-chr5-113945385-4	chr5	113945277	113945477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198109, intron 14 of 14)	intron (NM_198109, intron 14 of 14)	-36671.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	7.61982413047833	7.54197023782858	7.5873249504463	7.72177066822089	7.08469895013734	7.11938132956923	7.78292105967581	7.17019335746172	-0.400439322347371	0.0643184789000474	0.269491700590209
Merged-chr8-11098596-4	chr8	11098499	11098699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90169.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	8.03035022882986	8.21533698814793	8.02534118242899	7.99043371942828	7.62406428903232	7.40375156114477	7.44814454535939	7.17100531133439	-0.833870456940458	4.76253498742858e-06	0.000141778535286566
Merged-chr16-17409697-3	chr16	17409599	17409799	+	948.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023348, intron 1 of 4)	intron (NM_023348, intron 1 of 4)	-3385.0	NM_001001983	224020.0	Mm.5718	NM_001001983	ENSMUSG00000041720	Pi4ka	Pik4ca	phosphatidylinositol 4-kinase alpha	protein-coding	4.08749744592801	4.44020525741615	4.25809828282279	3.99130160609478	3.9026615106861	3.84332424919031	3.82283049212796	3.72094603454062	-1.02122151949807	0.023511247338459	0.142348129630491
Merged-chr9-44361711-4	chr9	44361587	44361787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357393)	promoter-TSS (NM_001357393)	-17.0	NM_027889	71732.0	Mm.295013	NM_027889	ENSMUSG00000032127	Vps11	1200011A11Rik	VPS11, CORVET/HOPS core subunit	protein-coding	5.80747207198677	5.58047364214721	5.78298406116056	5.68075829134249	6.67038570317518	6.05926130391729	5.92116839141109	6.3976818316807	0.934487741283499	0.00059272963337954	0.00885598787654586
Merged-chr2-142883032-4	chr2	142882930	142883130	+	848.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 1 of 26)	intron (NM_001355123, intron 1 of 26)	18434.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	4.53307755380322	4.26565444055941	4.25167847537311	4.74066368703813	4.07620765585502	3.82112659531391	4.18743470124734	4.24904815749208	-0.944639825581082	0.0274069735764835	0.157816177426445
Merged-chr15-96712588-2	chr15	96712488	96712688	+	816.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-12860.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	3.1162287355792	2.9568398582576	3.11661924433465	2.74914572650419	3.32571831865136	3.35055019897689	3.33069217966776	3.34309452448984	1.43153654311575	0.0114589462078482	0.0869523463980016
Merged-chr12-116433906-4	chr12	116433788	116433988	+	975.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133762, intron 16 of 28)	intron (NM_133762, intron 16 of 28)	28486.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	4.93635257831508	4.57630039154061	5.06925517926443	4.82587948867318	6.52330501730044	6.54019521159818	6.50460176514208	6.73541985133526	2.81135226991899	4.7321153282212e-25	2.96170205380021e-22
Merged-chr4-124709153-4	chr4	124709030	124709230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010213)	TTS (NM_010213)	-5731.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	5.96772298055676	5.86342137015657	5.57724075947888	5.70812166671546	6.4476842642025	6.33125172126951	6.28726361207897	6.07214912493454	0.8036706579923	0.00100224906731523	0.0134703712919997
Merged-chr6-51663385-4	chr6	51663260	51663460	+	926.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	118067.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	4.32623182594424	3.76954026988472	4.37156483270422	4.26819785733791	4.95645136447762	4.45673706418706	4.43575899679208	4.53314032698952	0.961968002516498	0.0225909628236724	0.138812285758028
Merged-chr15-80255546-1	chr15	80255446	80255646	+	1000.0	f0_balb.idr	5' UTR (NM_009716, exon 1 of 3)	5' UTR (NM_009716, exon 1 of 3)	362.0	NM_009716	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	6.4325998242316	6.97058468280062	6.11089648660368	5.78912763661799	6.49357922444568	6.57565919024442	5.94351986001622	6.08471524114751	-0.143077716129076	0.658790493595771	0.858011574025715
Merged-chr2-33430294-3	chr2	33430184	33430384	+	849.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085507, intron 1 of 2)	L2a|LINE|L2	1040.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	3.28606512497653	3.22313914628041	3.50167151616049	3.37289618743725	2.99972879318824	3.51380659072814	3.38473731020796	3.16237866880466	-0.2776391117607	0.620516990997207	0.837304069609261
Merged-chr12-72085080-4	chr12	72085043	72085243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205067)	promoter-TSS (NM_001205067)	170.0	NM_026038	67217.0	Mm.286120	NM_026038	ENSMUSG00000019718	L3hypdh	2810055F11Rik	L-3-hydroxyproline dehydratase (trans-)	protein-coding	4.86678817421934	4.61802152594945	4.79145021883699	4.64187528497696	4.97789852110998	5.21215298678232	4.91551462006543	5.29763753514068	0.759305886699397	0.0195170088035258	0.12590186420393
Merged-chr3-105020510-4	chr3	105020394	105020594	+	823.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	32459.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	5.07101551793622	4.12221961497842	4.67177900501768	4.77411378514732	4.36806848268826	4.37434609053446	4.32309278308562	4.24242366347117	-0.843341132075428	0.0432971877620952	0.21166741938762
Merged-chr3-96269120-4	chr3	96269042	96269242	+	862.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175666)	promoter-TSS (NM_175666)	488.0	NM_178215	319154.0	Mm.383293	NM_178215	ENSMUSG00000074403	Hist2h3b	H3-615|H3-616	histone cluster 2, H3b	protein-coding	3.78786533980149	3.59520463003799	3.55253337835545	3.54110603166915	4.17753364826282	3.73638573911895	3.97063097726101	4.47774491445606	1.41389175264613	0.00254657867093832	0.0281289452543015
Merged-chr5-92256706-4	chr5	92256605	92256805	+	935.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011148)	promoter-TSS (NM_011148)	-427.0	NM_011148	19023.0	Mm.87155	NM_011148	ENSMUSG00000029410	Ppef2	-	protein phosphatase, EF hand calcium-binding domain 2	protein-coding	4.89500122306345	4.64391689334348	5.11420906871758	5.30200000659931	4.505011116778	4.63269905042151	4.38460666871168	4.66984935290922	-0.99795528162542	0.00687068469435244	0.0600870458114403
Merged-chr6-51362786-4	chr6	51362686	51362886	+	927.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16924.0	NR_110455	625167.0	Mm.389772	NR_110455	ENSMUSG00000107660	Gm6559	EG625167	predicted gene 6559	ncRNA	4.72463731325492	4.64641329818739	4.68803116975533	4.8105975733117	4.67748998935675	4.47144272325579	4.8732535977507	4.33929874424792	-0.242681470676803	0.500862628476636	0.769017904448726
Merged-chr3-8989043-4	chr3	8988945	8989145	+	850.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	ORR1E|LTR|ERVL-MaLR	15159.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	4.07129705319386	4.04371536807723	4.07187898776119	4.42702651432427	4.21302171495397	4.19581506099215	4.32202228401253	4.298013770153	0.179108555995327	0.664048593242263	0.860824757192769
Merged-chr8-45333247-4	chr8	45333140	45333340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133969)	promoter-TSS (NM_133969)	-44.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	7.62402013319431	7.92167705714192	7.17061392142109	7.14519491687424	7.50784480435972	7.77730499611227	7.36199809085114	6.98680873826386	-0.0867758695414363	0.733588256931101	0.894541206455181
Merged-chr2-59184689-4	chr2	59184595	59184795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	23845.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	6.89322382539484	6.9430320002504	6.67715500793849	6.8541472092308	7.03902811450023	6.85449550293187	7.05529374278339	6.88955007035316	0.16606453577298	0.39426754909215	0.693393331827644
Merged-chr14-68567656-2	chr14	68567556	68567756	+	726.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_021475, intron 12 of 13)	intron (NM_021475, intron 12 of 13)	14416.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	3.72269817531667	3.62535840233803	3.56016909991323	3.58780647209622	3.49901784822462	3.84248515201265	3.80480486369275	3.81915920312409	0.363204115574725	0.439799993666791	0.727425871224001
Merged-chr18-82822836-2	chr18	82822736	82822936	+	755.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAAA)n|Simple_repeat|Simple_repeat	-33061.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	2.82415991253117	2.80198935000879	2.95340724693498	2.91839888818026	2.86204704959666	3.06252508361639	3.00197996869991	3.1762111805156	0.62926488881997	0.287912284217208	0.599886086244852
Merged-chr6-100833995-3	chr6	100833916	100834116	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182939, intron 1 of 8)	CpG	378.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	5.19254017833419	5.17880890717052	5.76455843041814	5.02460332776381	5.17375592770899	5.19665161508579	5.20004317163707	5.58172768879901	-0.0208925665850673	0.949968763999394	0.982132039459575
Merged-chr10-30600667-4	chr10	30600574	30600774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028604)	promoter-TSS (NM_028604)	26.0	NM_028604	73681.0	Mm.294503	NM_028604	ENSMUSG00000019792	Trmt11	2410075D05Rik|3110045I18Rik|AW213713	tRNA methyltransferase 11	protein-coding	6.48852979492028	6.11758598556656	6.36915732904721	6.77388633663295	6.73782128731966	6.21985550410519	6.35440317724085	6.27092345675697	-0.0712281396326998	0.784972771685311	0.916350853081457
Merged-chr16-91396811-2	chr16	91396739	91396939	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 7 of 7)	intron (NM_001347258, intron 7 of 7)	-9396.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	3.23960975489698	3.17842197810796	3.24002926011013	3.02145859215197	3.29714473431201	3.29213926615875	3.22789598226539	3.45256757520882	0.591038481300884	0.268024391777167	0.579851924935625
Merged-chr4-11454099-4	chr4	11453997	11454197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31861.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	7.52549350487303	7.366841586995	7.13067637588789	7.10370182448595	7.8256564746694	7.57220782138355	7.65614303580056	7.19710215946596	0.402437955401385	0.0578004126537717	0.252387925420699
Merged-chr6-114782146-4	chr6	114782029	114782229	+	815.770813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	139032.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	4.24306766466808	4.47854334449535	4.24373781384998	4.2237025077892	3.90901590277694	4.08420444407271	3.71845661571357	4.01017296679999	-0.966452054457773	0.0237901075812373	0.143518540616419
Merged-chr11-106716794-4	chr11	106716708	106716908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1527.0	NM_001305157	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	7.16612896742855	7.06450682464732	7.16737227107036	6.81347136116378	7.12941010458208	7.12954512946859	6.78092784828757	6.82508277253687	-0.0940449170242789	0.6548231815913	0.855720388544032
Merged-chr13-100197161-4	chr13	100197056	100197256	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 1 of 15)	intron (NM_001126182, intron 1 of 15)	4966.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	5.75421483681609	5.71488042011527	5.50557830802877	5.1427348244583	5.68506235961838	5.30242909635897	5.42186878978126	5.55571202600617	-0.0475515230568254	0.876844902136338	0.953810061776222
Merged-chr2-180070589-4	chr2	180070429	180070629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083328)	promoter-TSS (NM_001083328)	-64.0	NM_001083328	52856.0	Mm.219658	NM_028422	ENSMUSG00000039069	Mtg2	1810011P19Rik|2900056P18Rik|D2Bwg0647e|Gtpbp5	mitochondrial ribosome associated GTPase 2	protein-coding	6.87264321453458	6.80668266082845	6.70102220304454	6.93453669277507	6.673807441549	6.96710794712858	7.03686134552473	7.02076059013508	0.119832178190301	0.558268849648552	0.8030434967081
Merged-chr6-72364284-2	chr6	72364184	72364384	+	952.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331167, intron 1 of 5)	B2_Mm2|SINE|B2	-1852.0	NM_001331173	66510.0	Mm.170023	NM_025607	ENSMUSG00000055850	Rnf181	1700047F16Rik|2500002L14Rik|6230415N01Rik|C77350	ring finger protein 181	protein-coding	3.57139118389257	3.44271240604119	3.67920350958623	3.28612127404554	3.78807169277192	3.89904479823091	3.61191475220422	3.67704936171027	0.825120747060416	0.0891666683197941	0.325794070342109
Merged-chr15-88863221-4	chr15	88863141	88863341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145478, exon 4 of 6)	exon (NM_145478, exon 4 of 6)	1047.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	5.29076385781576	5.40599976396279	5.57569585464585	5.19696166581987	5.58483274616241	5.52907901912602	5.09719956929752	5.76004574503845	0.268229810603586	0.374516807923094	0.677830694759353
Merged-chr11-22858242-4	chr11	22858142	22858342	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	1493.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	6.13931997412485	6.33429735851955	5.88733165961575	5.82521191971516	5.73754678345336	6.27575893072111	5.80998092381557	5.50594774063833	-0.317221506943183	0.273294030003536	0.58486342477733
Merged-chr17-35471044-1	chr17	35470944	35471144	+	761.5	f0_balb.idr	exon (NM_010391, exon 3 of 7)	exon (NM_010391, exon 3 of 7)	955.0	NM_010391	15007.0	Mm.88795	NM_010391	ENSMUSG00000067235	H2-Q10	H-2Q10|Q10|Qa10	histocompatibility 2, Q region locus 10	protein-coding	3.04251834013627	3.28677409997422	3.15491024212241	3.33497755765029	2.77750350483521	2.89168129761024	2.62946784889206	2.78390612771738	-2.08432161488246	0.00202233152429606	0.0235863568028624
Merged-chr1-91299189-4	chr1	91299131	91299331	+	849.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016717, intron 1 of 11)	intron (NM_016717, intron 1 of 11)	893.0	NM_016717	50880.0	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	4.04448767974801	3.97642740472427	4.50727631649419	3.98626480276328	4.23437462620799	4.21995473487972	4.07726453337612	4.27349730323222	0.171676593613948	0.683705628173619	0.870394242877558
Merged-chr14-57366978-4	chr14	57366903	57367103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030004, intron 2 of 7)	intron (NM_030004, intron 2 of 7)	31480.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	6.14807626205345	6.018694866493	6.18898733270562	6.68965435488841	6.08676186626946	5.78405315851074	5.96836488959224	6.49514573405685	-0.293930852844597	0.305408338741332	0.617813594931132
Merged-chr10-67548278-6	chr10	67548213	67548413	+	990.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001005419, exon 1 of 1)	exon (NM_001005419, exon 1 of 1)	642.0	NM_001005419	211488.0	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	4.29514113382694	4.23617512362942	4.74629336751857	4.32313640221558	4.28632065516466	4.22752200658226	4.08475477425339	4.5005462275932	-0.299131650683165	0.461875841069915	0.743501704400988
Merged-chr17-74527381-4	chr17	74527269	74527469	+	946.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007566)	promoter-TSS (NM_007566)	-926.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	4.55222826888444	3.90410992204882	4.10970794398487	4.16937717475301	4.92441853661779	4.33963843131241	4.53113130065099	4.30284979060638	0.835610168399109	0.0506128182410482	0.233296839112781
Merged-chr17-35046839-4	chr17	35046717	35046917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146215)	promoter-TSS (NM_001146215)	-72.0	NM_001146215	17687.0	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	7.70212925083427	7.82129481697061	7.56253844194709	7.50640247146993	7.97294985544886	8.04452706948911	7.99908496319995	7.93964329646574	0.443208008946752	0.00829029181787651	0.06883176032948
Merged-chr11-8610621-4	chr11	8610542	8610742	+	959.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	53893.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	4.19141571460057	4.50998135307934	4.39205799108674	4.66770239428639	4.52060743355538	4.65628912864433	4.73109129033279	4.94459146776067	0.537562776997194	0.157287571728728	0.443782607377631
Merged-chr10-8862140-4	chr10	8862050	8862250	+	974.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	L2|LINE|L2	23920.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.8730865770797	5.51671848000684	4.75808559965126	4.87656327394453	5.03096371794724	5.0117532938289	4.81347078202972	4.53612166722481	-0.347638173627301	0.354558264035343	0.661235338019879
Merged-chr1-40240658-4	chr1	40240560	40240760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008362, intron 1 of 10)	intron (NM_008362, intron 1 of 10)	15580.0	NM_008362	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	5.99200226442103	6.20700763247046	6.40862534110822	6.19131664122149	5.74027318283181	6.19124054312306	6.08937501953907	5.94324259208803	-0.336742756616961	0.176917029254781	0.472170124684143
Merged-chr19-10759734-4	chr19	10759629	10759829	+	667.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027805, intron 1 of 3)	L2a|LINE|L2	18782.0	NR_027805	403202.0	Mm.34482	NM_207529	ENSMUSG00000067577	A430093F15Rik	Gm674	RIKEN cDNA A430093F15 gene	ncRNA	3.66316091172156	3.98134515861796	4.0745431538803	3.77470067101723	3.84989818830618	4.15374092059835	4.14016361078534	3.72060664454902	0.267928388578988	0.5574540324814	0.802650360635047
Merged-chr10-8067082-4	chr10	8066982	8067182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110959.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	6.12631686068	5.71593380817037	6.34944551156135	6.57497829384786	5.95563382786408	6.15377622730789	5.99112336253465	6.03939444157943	-0.324897651175823	0.240363439946624	0.550870712287303
Merged-chr17-29416535-3	chr17	29416450	29416650	+	958.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55636.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	3.59167300455854	3.74169269230923	3.65647618080655	4.12035718686154	4.33658335581211	4.01004387485028	4.34711241583355	4.21116656310208	1.0945193273408	0.023117106321187	0.14083549245805
Merged-chr2-45110389-4	chr2	45110286	45110486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110572)	promoter-TSS (NR_110572)	-9.0	NM_001355291	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	6.32384970814687	6.69901470315415	6.43344914733942	6.00156317954945	6.71771527176118	6.52037964896629	6.56199545230542	6.33916863049551	0.25159612492193	0.315302231226987	0.627105605858262
Merged-chr13-95973591-4	chr13	95973505	95973705	+	921.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029210, intron 12 of 12)	intron (NM_029210, intron 12 of 12)	-81683.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	4.63195453800047	4.58757004993527	4.08757262201979	4.58426811968236	4.51732021605198	4.26958293335953	4.45480628006828	4.80200484024271	0.0659571580107968	0.867856113413739	0.95047283198973
Merged-chr11-79652469-4	chr11	79652365	79652565	+	989.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	intron (NM_175543, intron 3 of 14)	22621.0	NR_045898	72218.0	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	5.14251284477603	5.21262961152252	4.92358356954331	4.98622899562663	5.37566588465749	5.21574895794829	5.6322972729203	5.54052279744018	0.698604792971404	0.0184663037449112	0.121401407061885
Merged-chr10-30771780-1	chr10	30771680	30771880	+	571.0	f0_balb.idr	5' UTR (NM_001358841, exon 2 of 16)	5' UTR (NM_001358841, exon 2 of 16)	31546.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	3.20582823221635	2.93667695486087	3.15389301660137	3.09304134307156	2.85314178398034	3.02781369768062	2.70499428556958	2.91816652264806	-0.964332871686923	0.118517955288801	0.380903881376893
Merged-chr5-65401758-4	chr5	65401645	65401845	+	862.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024471, intron 7 of 10)	intron (NM_024471, intron 7 of 10)	10248.0	NM_001310612	79464.0	Mm.195776	NM_024471	ENSMUSG00000029199	Lias	2900022L22Rik|4933425M12Rik|7a5ex|C77512|LS|lip-syn	lipoic acid synthetase	protein-coding	4.40218871144305	4.75770916446703	3.93580929287255	3.85798948249783	4.45425275135602	4.05597685598872	4.07582064387041	4.36016322301108	-0.098651770083862	0.838006617104476	0.938474063450959
Merged-chr17-50369462-4	chr17	50369353	50369553	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75833.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	5.48484504635974	5.37021138967217	5.31597755182453	5.2647358272272	5.19861991176534	5.57678181956178	5.28965512553472	5.2816738648025	-0.0319260213074222	0.911743105939534	0.967021434294281
Merged-chr13-37803388-4	chr13	37803289	37803489	+	949.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-22649.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.50086334155503	4.80365218528871	4.16899840480482	4.4809669296344	4.72429272968491	4.18314679023033	4.74253848700023	4.69257517166814	0.221034392445935	0.579908587378579	0.815515427067468
Merged-chr7-24463319-2	chr7	24463219	24463419	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011113, intron 1 of 6)	MIR|SINE|MIR	836.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	3.7902136226355	3.59340081853245	3.74429701957371	3.33361085111657	3.57733091742037	3.53815310425685	3.46920547751776	3.53715074274609	-0.263839256843218	0.602526579410069	0.827746549215817
Merged-chr1-64360691-4	chr1	64360604	64360804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-172100.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	5.5687618437599	5.28432043553413	5.97364725536935	5.91830584553833	5.22187233876499	5.38368176379792	5.4878557294783	5.42607092190138	-0.594420426245444	0.0499773020060748	0.231702884093688
Merged-chr12-87407677-4	chr12	87407548	87407748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19293.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	6.42250707049938	6.38520100183109	6.6157502532951	6.34582972962035	6.36092260050653	6.33227323781729	6.53685329004622	6.36608438233957	-0.0545175595814413	0.801621014923491	0.923495023618862
Merged-chr12-55506161-4	chr12	55506055	55506255	+	690.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13508.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	4.08718973841972	4.03705106018114	3.66038383197633	3.69224768509821	4.26540099671488	4.21286335024778	3.97622731732605	4.12997354915428	0.750597490011583	0.0867143555636837	0.321209032577518
Merged-chr11-3162107-3	chr11	3162026	3162226	+	978.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 9 of 32)	intron (NM_030207, intron 9 of 32)	31337.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.05900259501599	5.04269655121807	5.39809610229147	5.16102360974342	3.3376519848226	3.80362225507495	3.65588446504137	3.8120132569265	-4.64780686052175	6.44812802002518e-14	8.7423105588071e-12
Merged-chr9-98979914-4	chr9	98979819	98980019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6454.0	NM_011810	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	5.21750370542755	4.92164444388316	5.12345764154635	5.28396939807801	5.4039711163401	4.58585557114378	5.46330612785645	5.15235612741841	0.102040980878809	0.771161250764078	0.91036734532567
Merged-chr17-24351608-2	chr17	24351510	24351710	+	1000.0	f0_c57.idr|f1_balb.idr	promoter-TSS (NM_013855)	promoter-TSS (NM_013855)	-413.0	NM_013855	27410.0	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	3.75808748733684	3.56460081105403	3.63901768288826	3.20944037010513	4.2086743491151	4.04678694719791	4.36206942022432	4.38124440206378	2.07069273200789	9.2223541849739e-06	0.000256320948274993
Merged-chr11-97416056-3	chr11	97415955	97416155	+	871.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-34105.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	3.73953738519303	3.68375073805422	3.57532585173738	3.45909699829891	3.63415278091244	3.96134783700558	3.50274584047895	4.09463733112391	0.614144941126076	0.210712913795585	0.515327060959003
Merged-chr4-120879663-4	chr4	120879540	120879740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 3 of 7)	MIR3|SINE|MIR	24841.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	7.05678191830667	7.1625781333854	7.40243217177544	6.82293899292843	6.97388467929811	7.27016127447539	7.01036376492251	6.52329522482617	-0.205846022287684	0.386569631855094	0.687719065878874
Merged-chr2-104742776-4	chr2	104742637	104742837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144804)	promoter-TSS (NM_144804)	64.0	NM_144804	211896.0	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding	6.69805680712641	7.13013845117902	7.57744455363178	6.93182193082668	6.49868491884898	6.64302152124883	6.58622356124408	6.51348328525998	-0.791901519848707	0.00120118731600392	0.0155783750533634
Merged-chr3-89714513-3	chr3	89714416	89714616	+	820.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357958)	promoter-TSS (NM_001357958)	-506.0	NM_001038587	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	3.59499621018458	3.75357613829717	3.29555913834102	3.21564168455199	3.85011078616036	3.4765188173845	3.58089214302439	3.83661992598684	0.707541326714358	0.17761597489083	0.473095366416733
Merged-chr9-20831112-4	chr9	20830985	20831185	+	695.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12581.0	NM_001030290	235033.0	Mm.297661	NM_001030290	ENSMUSG00000053773	Rdh8	Gm182|prRDH	retinol dehydrogenase 8	protein-coding	3.62691268139258	3.53261082855505	3.72621754297319	3.35748396592404	3.53205007828278	3.51911733258245	3.2656017798298	3.81535177268885	-0.0349032185852527	0.946362622516777	0.980868358011675
Merged-chr1-36869808-4	chr1	36869708	36869908	+	797.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 4 of 40)	intron (NM_018872, intron 4 of 40)	69719.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	4.09118019950139	4.03459890541156	3.90365104946026	3.93504248710174	4.10519318509783	4.07570811774975	3.48016190109396	3.9510093758654	-0.162804427910623	0.727099805197403	0.891330894084905
Merged-chr3-132029264-4	chr3	132029180	132029380	+	889.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56012.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	4.19313333329477	4.53556884159297	4.28971017803734	4.61803037366864	4.44890269304806	4.26853959634326	4.35951171969652	4.49940450248362	-0.0881696836438777	0.820428746212992	0.931216561407907
Merged-chr9-97020448-5	chr9	97020366	97020566	+	735.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2111.0	NM_145134	211949.0	Mm.491271	NM_145134	ENSMUSG00000046997	Spsb4	D030068E18Rik|SSB-4|Ssb4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding	2.20655803125476	2.28463729822115	2.28219144042925	2.16218853605952	2.45561482368541	2.65498112348694	2.47657432502992	2.48477934389506	1.71225222147226	0.0164332276476624	0.111975043083882
Merged-chr2-15055141-4	chr2	15055031	15055231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029466)	promoter-TSS (NM_029466)	-231.0	NM_029466	75869.0	Mm.174068	NM_029466	ENSMUSG00000017418	Arl5b	4930587A11Rik|AW146430|Arl8	ADP-ribosylation factor-like 5B	protein-coding	8.82217768485351	9.14333327756375	8.98103071292945	8.99697772728682	9.05205992435059	9.15179408951702	9.27962978130232	8.91635353259142	0.141026023526692	0.368100810904031	0.672564472502765
Merged-chr5-114942221-4	chr5	114942122	114942322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028211)	promoter-TSS (NM_028211)	20.0	NM_028211	72357.0	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	6.19999930157025	6.19852325599478	5.87276634099666	5.87062573846019	6.40143546265549	6.25572668049243	6.15001882639736	6.27142436768569	0.372907845234611	0.118473831742193	0.380818680887713
Merged-chr7-96409244-3	chr7	96409160	96409360	+	923.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 2 of 32)	intron (NM_011858, intron 2 of 32)	-67296.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	4.52632479721842	4.00343279500458	4.34592354466861	4.56479924594944	3.51142688637474	3.61838220416287	4.06918857775482	3.98567821614949	-1.53976459894055	0.0015646956924796	0.0193390301606191
Merged-chr15-58140968-1	chr15	58140868	58141068	+	1000.0	f0_balb.idr	promoter-TSS (NM_001326599)	promoter-TSS (NM_001326599)	-398.0	NM_001326602	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	4.83457512188255	4.68158640111977	4.87000460345815	4.8836133483377	4.25248357299076	4.69624140456308	4.40612094828986	5.14112999629468	-0.331245395485447	0.400396368580285	0.698199689340163
Merged-chr5-18000326-4	chr5	18000219	18000419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 4 of 7)	intron (NM_001081143, intron 4 of 7)	37749.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	7.80839432901501	7.55965665224404	7.94771120067551	7.69577245345604	7.48585974768683	7.36755811495371	7.09232831990559	7.46246667333059	-0.517927601391035	0.00665917668952155	0.0586407939605907
Merged-chr8-120113583-1	chr8	120113483	120113683	+	1000.0	f0_balb.idr	promoter-TSS (NM_001163762)	promoter-TSS (NM_001163762)	-569.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	6.30121047228267	6.64763877669	7.38465501000917	7.15677588499286	6.96075481594662	6.89153478606276	6.83703448795037	6.783470420788	-0.104907825149184	0.6949935738266	0.876254496349368
Merged-chr14-66200001-4	chr14	66199907	66200107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 2 of 30)	intron (NM_001162366, intron 2 of 30)	13817.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	6.43650273485611	6.21118938947714	6.17235814436377	6.71120093277678	6.28136629554975	6.2634883231631	6.53380536157894	6.68013583294256	0.0439495999205879	0.860776584703878	0.947426570442475
Merged-chr2-157513823-4	chr2	157513745	157513945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46233.0	NM_001291129	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	6.18895651826585	6.4044513592842	6.25024649011709	6.27302273194098	6.49399007311837	6.44598274125534	6.67277954012819	6.46246818574824	0.354355657115275	0.0993770633643395	0.345722474201968
Merged-chr17-17587901-4	chr17	17587799	17587999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	36590.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	5.11022321056755	5.22073911349659	4.93607475793627	5.29856339940219	5.17772646923074	5.07449691342351	5.23871112724964	4.89483352889464	-0.104420458268106	0.737624154551903	0.896392006995728
Merged-chr12-12318260-3	chr12	12318176	12318376	+	676.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 2 of 11)	intron (NM_001146119, intron 2 of 11)	56137.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	3.3757292967187	3.19307320699424	3.16976650333331	3.1156609853806	2.84071086889274	2.96197240341032	2.84610211939804	3.11076955212635	-1.15561717577593	0.055662550453266	0.246922270048317
Merged-chr7-122298756-4	chr7	122298659	122298859	+	887.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	MIRb|SINE|MIR	9634.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	5.03113684084512	4.07393705981051	4.47605213475328	4.89634093617829	4.35929380686752	4.41894105433345	4.53925747169088	4.74671429493684	-0.337260837377933	0.4303231642531	0.720942722505565
Merged-chr11-3159532-2	chr11	3159433	3159633	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 10 of 32)	MTD|LTR|ERVL-MaLR	33930.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.57215650541451	6.30752640113884	6.20059130352213	6.13419678785899	3.50630777810179	4.00531271975524	3.91770100790099	3.9321595098026	-8.94033321728779	1.51691772063618e-17	3.68507462242875e-15
Merged-chr2-155097027-2	chr2	155096927	155097127	+	766.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040634)	TTS (NR_040634)	3052.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	2.9485525270509	2.91241317527146	2.88204068869223	2.66921653294905	3.42300647191863	3.12377756042156	3.06157495158406	3.18503753733291	1.5445344889418	0.0089876205968999	0.0731119824533415
Merged-chr6-142752200-4	chr6	142752100	142752300	+	742.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-4486.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	4.06538989038282	3.81678306866022	3.92229233510636	3.87316082414653	4.10075434267148	4.04441112309974	3.74643952955583	4.23252935710108	0.345685767234707	0.42650230133265	0.717943860798456
Merged-chr13-23584481-4	chr13	23584363	23584563	+	990.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178194, exon 2 of 2)	3' UTR (NM_178194, exon 2 of 2)	1507.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	4.67569041434633	4.77852167233389	4.71748027412718	4.6664932171625	4.7150279634336	5.11144840855862	5.01264743829122	5.12482258083886	0.574018069390217	0.083375394088498	0.313865939064163
Merged-chr8-83077570-1	chr8	83077470	83077670	+	733.333313	f0_balb.idr	intron (NM_177378, intron 6 of 6)	ORR1F|LTR|ERVL-MaLR	-87782.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	3.28057400239719	3.31054820257917	3.22988240958599	3.20961888874036	2.5658103261081	2.90919644048259	2.71916051064652	2.86954773078738	-2.42856540294295	0.000565481537984695	0.00851860537401325
Merged-chr8-83594596-4	chr8	83594479	83594679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027179)	promoter-TSS (NM_027179)	-88.0	NM_134118	106529.0	Mm.352239	NM_027179	ENSMUSG00000031708	Tecr	2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|SC2	trans-2,3-enoyl-CoA reductase	protein-coding	8.35963964011284	8.55241648404368	8.48203128955438	8.24364578181457	8.6392439698266	8.79761534710626	8.70782439282624	8.60959464180406	0.351437945101536	0.0241614345669875	0.145080711240392
Merged-chr10-80702100-4	chr10	80701987	80702187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027829)	promoter-TSS (NM_027829)	-267.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	9.16974760825598	9.39796136396487	9.43036893270148	9.3374033399891	9.2393793658439	9.64257030800609	9.41330449671578	9.31771431684903	0.0881613409262133	0.57123324344747	0.810459925004484
Merged-chr11-107469122-4	chr11	107469083	107469283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	CpG	1537.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	7.43923091023768	7.06968502560445	7.8020828559111	7.45348841625004	7.67796879712913	7.51658775810549	7.84176644867025	7.37545976196903	0.20263409372634	0.348113983955972	0.655950834707556
Merged-chr5-136244944-4	chr5	136244850	136245050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302939)	promoter-TSS (NM_001302939)	-10.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	6.75258330799537	7.08562013959977	6.91259587515378	6.70257347572271	7.30038305649359	7.39975220723985	7.18721067539034	7.09619349499113	0.531603700714215	0.00790303961458939	0.0666426320017602
Merged-chr7-80901278-4	chr7	80901169	80901369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027976)	promoter-TSS (NR_027976)	0.0	NR_152101	71968.0	Mm.274226	NM_028026	ENSMUSG00000025722	Wdr73	1200011I23Rik|2410008B13Rik|AI848574|C85352	WD repeat domain 73	protein-coding	7.22429008796474	6.85925221103514	6.5592926370987	7.1193313302825	7.09943254653265	6.77229911950903	7.17899620584	6.80819732611307	0.0138040797379661	0.952387736320409	0.983110341498473
Merged-chr3-116166454-4	chr3	116166279	116166479	+	874.020874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER104|DNA|TcMar-Tc2	-36691.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	3.68417278703905	3.72268335678201	4.13077213624311	3.4587969999976	3.71526855900086	3.50215931867543	3.72146212509179	3.68260123118582	-0.305139764876953	0.546024903603976	0.796098046161971
Merged-chr17-40869385-4	chr17	40869272	40869472	+	863.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER67C|LTR|ERV1	11186.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	3.76729092970005	3.7334835947365	4.07299034872704	4.00601150528311	3.99184518978232	4.19706756368761	4.14146929511595	3.97666728329101	0.447817764723116	0.300733674299914	0.612615171792683
Merged-chr4-134534502-4	chr4	134534426	134534626	+	974.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029759, intron 1 of 6)	CpG	570.0	NM_001355188	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	5.39031131838784	4.66064654999212	5.12535802276378	5.1545235014046	5.16078982998638	5.12654226728183	5.10024825693491	5.4647599134448	0.212050494710685	0.522493998159291	0.781971587334536
Merged-chr11-8604947-4	chr11	8604830	8605030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	59605.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	7.39176161404467	7.48983210883062	7.52387940136929	7.73889883769899	7.24113982416074	7.2592700286446	6.99443603257341	7.37801155244308	-0.437959242433724	0.0220909990080453	0.136874583773821
Merged-chr2-48333005-6	chr2	48332868	48333068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-481141.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	4.89094454259681	4.22943321934726	4.85406304343257	4.8241747618554	5.03213871945916	5.301019612197	5.19151436331869	5.37556620044009	0.967258356105578	0.00604952216664514	0.0546098843753499
Merged-chr13-60707515-4	chr13	60707409	60707609	+	851.291626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	78855.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	3.31408888750379	3.14338500254667	3.41672258468103	3.19476960422651	3.17270153734542	3.0559432750039	3.00723610635601	3.25840550828752	-0.528915964471009	0.346662176454604	0.654875847497604
Merged-chr3-27345707-4	chr3	27345616	27345816	+	975.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25635.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	4.80396164751197	5.50398865254068	5.32941371989098	4.57418700661878	5.5324405018686	5.6118320978733	5.38515674141513	4.75795156705773	0.472657687995438	0.229775813831581	0.538856256177995
Merged-chr3-116662371-1	chr3	116662271	116662471	+	1000.0	f0_c57.idr	intron (NM_008246, intron 1 of 11)	CpG	306.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	6.76963624776605	6.77756907064283	6.88112505515465	6.43464750898381	6.72520013985174	6.90360371706688	7.01784968170423	6.98965099527437	0.280176124428087	0.193308064024135	0.493529716199714
Merged-chr1-86492461-3	chr1	86492368	86492568	+	915.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34089.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	4.07978562314558	3.46361789563094	3.15796531919022	3.74337391914395	3.80684875070627	3.47912686739939	3.41419184884375	3.4842244374983	-0.294792127377392	0.612060699576065	0.832680684364583
Merged-chr7-19821991-3	chr7	19821853	19822053	+	816.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033601, intron 1 of 8)	intron (NM_033601, intron 1 of 8)	802.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	3.69704047442403	3.46104002877924	3.69758902894434	3.31317206516796	3.60608010285085	3.41031817836336	3.8199453693891	3.59286480002717	0.247216209813085	0.625350101405511	0.839851429183237
Merged-chr13-12589192-2	chr13	12589105	12589305	+	688.625	f0_balb.idr|f0_c57.idr	intron (NM_026184, intron 6 of 15)	B3|SINE|B2	23322.0	NM_026184	67475.0	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding	4.31194500462694	3.96827769481975	4.22726446855448	3.95810242275039	4.20707178137804	4.67064962418416	4.02037144889639	3.8724461631329	0.272648528217436	0.545200408203536	0.795786194536872
Merged-chr10-22730977-2	chr10	22730877	22731077	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011603, intron 1 of 6)	CpG	470.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	5.09393930114379	4.7179560201077	4.80074224966449	4.6784467523685	4.79923737249506	4.69129659970893	4.70284718650955	4.83379744202815	-0.123526283332348	0.717004111109884	0.886862882314135
Merged-chr2-117343605-6	chr2	117343463	117343663	+	934.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011246)	promoter-TSS (NM_011246)	-686.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	3.51165560626099	3.79972879002249	3.95862977351088	3.68745514741505	3.97737265131959	3.92936013051311	4.19439600444715	4.00258122880182	0.795990509109093	0.0744185526223181	0.294018547796624
Merged-chr8-83131847-4	chr8	83131708	83131908	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33544.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	4.42614230931202	4.16282874206627	4.75722288384326	4.71497211431056	4.37014727713646	4.10543214364429	4.36445585531734	4.38139426290724	-0.535120159152047	0.186077867801832	0.484014101364226
Merged-chr11-106980654-2	chr11	106980558	106980758	+	839.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18867.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	3.51750499462869	3.7095222858328	3.3962030371282	3.40833168859562	3.69094707391605	3.85187725650279	3.8972197074054	3.51611375879066	0.735227897950045	0.130125141848558	0.401547403300569
Merged-chr3-136326060-4	chr3	136325941	136326141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310749)	promoter-TSS (NM_001310749)	25.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	6.85460683882598	6.82364422420189	7.44922650488383	7.39024118672113	7.02370151858427	6.71667619110474	7.19515086084646	6.91933206553398	-0.265030982759956	0.266137155400945	0.577876714690945
Merged-chr19-5801954-5	chr19	5801824	5802024	+	848.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002847, exon 1 of 1)	non-coding (NR_002847, exon 1 of 1)	748.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	4.15758372290335	3.90021146620968	3.80203166538193	3.68469425970398	4.68296000787868	4.14304139837054	3.66686449567602	4.32204320683178	0.955645530286142	0.0505465640441745	0.233187755661436
Merged-chr8-94594425-3	chr8	94594351	94594551	+	620.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028221, intron 1 of 7)	intron (NM_028221, intron 1 of 7)	7275.0	NM_028221	102122.0	Mm.250425	NM_028221	ENSMUSG00000031774	Fam192a	1700001O11Rik|2310065K24Rik|AI596259|Nip30	family with sequence similarity 192, member A	protein-coding	3.39988720320034	3.35597261166294	3.23781828183859	3.41308397724744	3.14054203991811	3.28936635605263	3.10650857834923	2.98234612096604	-0.859598646442052	0.122722825302363	0.388252277087734
Merged-chr12-79011186-2	chr12	79011087	79011287	+	671.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-3910.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	3.30300219510272	3.21847892694944	2.87971928436781	2.86627070729212	3.17332830614222	3.12544895228465	3.06730869868265	3.24892495686146	0.323659794070773	0.582362861239066	0.816519074787564
Merged-chr14-70977393-1	chr14	70977293	70977493	+	695.0	f0_balb.idr	intron (NM_001302094, intron 7 of 7)	intron (NM_001302094, intron 7 of 7)	87286.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	3.41721038312496	3.280599266695	3.31467350857517	3.47180343109529	2.7964720864158	3.1906091888997	3.06954679381192	3.01263222717923	-1.4814418417805	0.0135048381857906	0.097570125581241
Merged-chr11-72429594-4	chr11	72429481	72429681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR55|LTR|ERVL?	-5945.0	NM_027819	71522.0	Mm.23336	NM_027819	ENSMUSG00000040471	Ggt6	9030405D14Rik|AI427679|AW490214	gamma-glutamyltransferase 6	protein-coding	5.67559717085942	5.9665780292704	6.02506431935358	5.83714010976368	5.94756194155774	5.8530409091333	5.56574003502149	5.91505767459953	-0.0754970060136154	0.769567978414582	0.909742530773464
Merged-chr4-115000673-4	chr4	115000571	115000771	+	828.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304551, intron 1 of 15)	intron (NM_001304551, intron 1 of 15)	553.0	NM_001304555	20460.0	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	4.03213573598634	4.41207458521265	4.08203304436405	4.05907167104493	4.30448584461541	3.93549172747719	4.1117060743694	4.2169219953535	0.00876017409134885	0.983355536040034	0.993990503512979
Merged-chr10-68249510-4	chr10	68249424	68249624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	29202.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	7.23510032997428	7.47469665981134	7.40564590374095	6.72767734304784	7.2588233243386	7.29020057467079	6.92811556362108	6.78846281085979	-0.199063523514533	0.415367913733194	0.709616761031467
Merged-chr11-50239301-4	chr11	50239158	50239358	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008521)	promoter-TSS (NM_008521)	-726.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	5.35882432050538	5.56892928958479	6.07097238853726	5.84585620902202	5.05430392057492	4.85657855689841	5.14114537493586	5.12782051153751	-1.23518212147006	9.33504461875563e-05	0.00191597214797695
Merged-chr1-131339916-3	chr1	131339805	131340005	+	987.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 10 of 22)	intron (NM_001081011, intron 10 of 22)	-60342.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	4.29397101621098	4.48525740999647	4.49574614473926	4.48581698556112	3.99301491413783	3.88674552924634	4.09011159006378	4.37614485655291	-0.868537769478234	0.0341817189889189	0.182576960521706
Merged-chr9-100395895-4	chr9	100395805	100396005	+	850.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90568.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	4.10041995181283	4.13968923911789	4.00032667629335	4.28548797781811	4.57082439060195	3.82959115682971	4.41821379175508	4.04929459656721	0.293358686927598	0.512112489447681	0.775701492755237
Merged-chr10-53377209-4	chr10	53377108	53377308	+	923.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204983, intron 1 of 12)	intron (NM_001204983, intron 1 of 12)	2643.0	NM_001204983	100038725.0	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	Gm9766	centrosomal protein 85-like	protein-coding	3.80167330885454	4.22021669846412	3.91732953893059	3.78342260667982	4.37766105288776	4.38385064263472	4.31796567289726	4.25330136294518	1.02050318447568	0.0134291956752664	0.0972110972205619
Merged-chr2-173186567-4	chr2	173186430	173186630	+	841.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32392.0	NM_021394	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	3.44241182275629	3.85181757916017	3.78981819930271	3.72887380028588	3.81533599326228	3.62360070314852	4.00296759362303	3.97589084210432	0.431078911917462	0.359629500168042	0.665443059431823
Merged-chr6-85029118-4	chr6	85029026	85029226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 1 of 21)	intron (NM_177077, intron 1 of 21)	40387.0	NM_177077	75914.0	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	5.43673446266816	5.68678128128181	5.69818627050257	5.87989719706049	4.9843920283526	5.21507525808147	5.3814124641985	5.59638227846296	-0.684776635347728	0.0237607647058617	0.143412827185494
Merged-chr16-37868869-3	chr16	37868745	37868945	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177093, exon 1 of 4)	exon (NM_177093, exon 1 of 4)	445.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	5.5575212681265	5.06277577165794	5.55849529501845	5.32942423583419	5.1999437443595	5.28283627315063	5.42491573170147	5.72091453789023	0.0580546108410149	0.850642561106959	0.943633424218446
Merged-chr17-74853881-3	chr17	74853791	74853991	+	881.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152817, intron 16 of 19)	intron (NM_152817, intron 16 of 19)	136141.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	3.84111299770846	3.65562578911509	3.55542285222854	4.06268526909155	3.95848476166201	3.85110133474076	4.35724583798084	4.16064601987154	0.792200466764644	0.103139426801791	0.352778237671439
Merged-chr9-124037933-4	chr9	124037859	124038059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26B_MM|LTR|ERVK	15988.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	6.89573445708193	7.12199791235938	6.81272424772884	7.26928985377931	6.67752485798828	7.0045010902323	7.33009756439471	6.89205706703771	-0.0791612257634978	0.731455708146429	0.893653675510084
Merged-chr7-69971641-4	chr7	69971548	69971748	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	366174.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	5.55768144227996	5.09213657429174	5.47999367002215	5.75023657091056	5.20063710893625	5.38616823604731	5.50502132031271	5.17212200865743	-0.329238542675858	0.288788824993367	0.600780352892091
Merged-chr10-20060789-3	chr10	20060691	20060891	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 10 of 29)	intron (NM_008580, intron 10 of 29)	-88129.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	4.56141143521682	4.53592368316272	4.4897635352739	4.16275101286415	4.30539318186129	3.94251845092993	3.92352988766358	4.09745508460524	-0.866866176833527	0.044142999984072	0.214299181275833
Merged-chr10-14035042-4	chr10	14034945	14035145	+	979.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	MER20|DNA|hAT-Charlie	68666.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	5.09276374237846	5.16315303619701	5.47001834286741	5.90189766384067	5.31349288745605	4.90425048609289	5.70841274078491	5.41070205646776	-0.175454744900046	0.625786455472642	0.840098340545957
Merged-chr15-66297630-3	chr15	66297525	66297725	+	707.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11401.0	NM_152923	110862.0	Mm.255585	NM_152923	ENSMUSG00000056258	Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding	3.74661224235663	3.19954727315596	3.54124100950716	3.81005675512067	3.29309671415394	3.60070889095334	3.58132641348357	3.8363866149404	-0.0405432440495079	0.940993435776875	0.978676631829834
Merged-chr9-85748905-4	chr9	85748814	85749014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175371, intron 1 of 27)	CpG	420.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	6.08407433777786	6.16919927925214	6.20930912384738	6.21941707893247	6.29361424297212	6.34520892116273	6.47379804724198	6.47085339519192	0.328841599064798	0.133360242604426	0.406663040937973
Merged-chr6-97995943-4	chr6	97995846	97996046	+	952.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001178049, intron 4 of 9)	intron (NM_001178049, intron 4 of 9)	4163.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	4.89947832874817	4.96500390024708	4.86510863873718	4.86247602166997	4.82426590345926	4.96486460692609	4.76913723921482	4.58454644872561	-0.212887492942596	0.516752822863055	0.778437476001976
Merged-chr11-111101932-4	chr11	111101874	111102074	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	35810.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	4.82903229589387	4.83180004932308	4.39838921905569	4.71167765151278	4.06797212207635	4.44034058854316	3.73684874490396	3.8791619454066	-1.57633984567731	0.000387984733337959	0.00627502052584925
Merged-chr5-123125826-3	chr5	123125713	123125913	+	863.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175092, intron 2 of 4)	intron (NM_175092, intron 2 of 4)	6816.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	3.99791670134274	4.00443146849534	3.94876283978734	3.98146994269933	3.88015224272431	4.3058653220955	3.82811521623215	4.17746863550979	0.19312828402045	0.65439585554762	0.855627266515171
Merged-chr8-107588482-4	chr8	107588367	107588567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010817)	promoter-TSS (NM_010817)	15.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	7.60025622458315	7.83558218655108	7.37130122507354	7.71675980743622	7.61884949153624	7.83030251969436	7.76554782119731	7.43777411516976	0.0283136141640445	0.882017349147916	0.955528863141706
Merged-chr11-116409223-2	chr11	116409123	116409323	+	871.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 1 of 18)	L1M4|LINE|L1	3809.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	3.64686166915238	3.64523542072533	3.27499966599747	3.32616666717729	4.36259319106784	3.76768465875778	3.57774979489046	3.59002723724918	1.19233354379926	0.0268590334524976	0.155780738349564
Merged-chr8-3670583-2	chr8	3670479	3670679	+	587.25	f0_balb.idr|f0_c57.idr	TTS (NM_001357661)	TTS (NM_001357661)	1812.0	NM_001357661	100503924.0	Mm.415621	NM_001357661	ENSMUSG00000089665	Fcor	2400009B08Rik	Foxo1 corepressor	protein-coding	3.87645834204088	3.76784438552451	3.77495869727728	3.57698814205225	3.8493876835589	3.72347256715012	3.99813906070023	4.09860462834649	0.528531404073583	0.24148811330626	0.552034276752374
Merged-chr1-105994865-2	chr1	105994765	105994965	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	4459.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	3.17152869767608	3.05509672891268	3.56059749153459	2.88028490981481	3.26546659689344	2.80741015746028	2.77053708914798	3.11214501678073	-0.705569399763986	0.296447184131247	0.608478404731474
Merged-chr15-84324701-4	chr15	84324563	84324763	+	865.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022321)	promoter-TSS (NM_022321)	-57.0	NM_022321	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	3.83761870434985	3.59708139480138	4.12255840254008	3.97820835611806	3.85434468987086	3.7881498941252	3.92333335464013	4.31557742491608	0.234716969470878	0.616768294869727	0.835150401688917
Merged-chr16-91548158-4	chr16	91548059	91548259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008338, intron 1 of 6)	intron (NM_008338, intron 1 of 6)	1065.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	6.33055134177312	6.27187938845416	6.45540280372599	6.62950432810081	6.42295992961402	6.4317291381398	6.42241187996698	6.3455729053081	-0.0550441250251014	0.803993692267153	0.924493051202757
Merged-chr17-40882200-3	chr17	40882074	40882274	+	826.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1616.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	2.93091935103854	2.8558364543115	3.30589174869813	2.61402895650134	3.88917133830623	3.72919147993791	3.95205576548936	4.120985408361	3.94791591800657	4.53042665185326e-10	3.09770642317256e-08
Merged-chr12-95749307-3	chr12	95749213	95749413	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	57087.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	4.81991810538193	4.02783984681879	4.61989457488569	4.74654850068714	4.27499451185252	4.59687041651606	4.12340448592005	4.02886675623697	-0.737470449074441	0.094146290629441	0.335643112200218
Merged-chr9-96384235-3	chr9	96384135	96384335	+	869.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-19804.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	2.92794071653604	2.56074094540195	2.59754052167285	2.95563837938265	2.13929135400908	2.34185411040215	2.31287001479021	2.23810217103113	-4.19953130877589	0.000134570550585434	0.00260503951587979
Merged-chr3-37313624-4	chr3	37313537	37313737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001255992, intron 1 of 1)	L2|LINE|L2	1083.0	NM_001008502	241950.0	Mm.32171	NM_001008502	ENSMUSG00000051444	Bbs12	Gm1805|Gm407|Gm721	Bardet-Biedl syndrome 12 (human)	protein-coding	5.62267274778829	5.68251402242318	6.23257923934997	6.02442414794865	5.77911173964819	5.88121351753401	5.77614426585062	5.82547796931765	-0.170581457084147	0.526167317157376	0.783568247232079
Merged-chr16-92853779-3	chr16	92853670	92853870	+	846.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27696.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	3.76474378027831	3.48203581484462	3.61017280957268	4.0438084796612	3.55599539911722	3.6699767796812	3.7003498075511	3.55217931495404	-0.430369347434068	0.391107759313571	0.690974191471137
Merged-chr11-94549128-4	chr11	94549043	94549243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013381)	promoter-TSS (NM_001013381)	64.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	6.36561134931522	6.26758263647435	6.11024500662692	6.11867023054563	6.32492933551428	6.69291515910633	6.26095643250117	6.71708510654572	0.438911714351211	0.0633043797078513	0.267018811450379
Merged-chr2-117386703-4	chr2	117386578	117386778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43801.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	5.77154176677625	6.33980119209295	5.87111145312897	5.90294167615589	5.95580990870341	6.11544858587118	5.91001737040578	5.79381006438137	-0.069877858318143	0.79029849254166	0.918828686312538
Merged-chr19-36375459-6	chr19	36375340	36375540	+	983.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3627.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	4.35583534897441	5.16355342953887	4.77522017732502	4.17584078655949	4.59632415932953	5.23149071439579	4.60133271375073	3.95799806417142	-0.01714486050719	0.98142962139286	0.993361854006063
Merged-chr7-28377542-4	chr7	28377420	28377620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011756, exon 2 of 2)	3' UTR (NM_011756, exon 2 of 2)	1708.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	5.74939801047115	6.7798101131366	5.9502004286941	5.23006131487857	6.40685737811864	6.69278426338789	5.91943402308506	5.63365038021566	0.248019807822275	0.675213752238383	0.866604873340231
Merged-chr5-148483457-4	chr5	148483359	148483559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68214.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	6.71390310494575	6.8756879287875	6.92950217684372	7.15902721785604	6.97144014897077	7.07964537468258	7.05399770489265	7.01334205324115	0.113662294858377	0.573850189148184	0.811973307930812
Merged-chr16-34416980-3	chr16	34416871	34417071	+	849.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 1 of 59)	intron (NM_177357, intron 1 of 59)	97056.0	NM_001164268	545156.0	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	4.2094206244285	3.52395450066466	4.21014999309972	4.36287261119926	3.35192207589775	3.66189062805549	3.33008260674725	3.33916000677808	-2.19899749790234	9.72609534056194e-05	0.0019842182294235
Merged-chr3-90669101-4	chr3	90669018	90669218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013650)	promoter-TSS (NM_013650)	47.0	NM_013650	20201.0	Mm.21567	NM_013650	ENSMUSG00000056054	S100a8	60B8Ag|AI323541|B8Ag|CFAg|CP-10|Caga|MRP8|p8	S100 calcium binding protein A8 (calgranulin A)	protein-coding	6.34622457670846	6.02798891555799	6.48683148438689	6.37469529019298	5.35667052184783	5.50139865508006	5.69372421670066	5.96261602466481	-1.08238817291563	7.15057575267208e-05	0.00153073934285548
Merged-chr19-10101850-4	chr19	10101744	10101944	+	800.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019699)	promoter-TSS (NM_019699)	-341.0	NM_019699	56473.0	Mm.38901	NM_019699	ENSMUSG00000024665	Fads2	2900042M13Rik|Fadsd2	fatty acid desaturase 2	protein-coding	3.39424661442684	3.37596584040364	3.33553709577735	3.39321973800466	3.57557083846665	3.25137037380379	3.72904720931377	3.55537860012362	0.555495940179316	0.274194087877689	0.585933560930861
Merged-chr10-57570466-4	chr10	57570408	57570608	+	952.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-37979.0	NM_019760	56442.0	Mm.29344	NM_019760	ENSMUSG00000019877	Serinc1	1500011D18Rik|AI315070|AIGP-2|TMS-2|Tde1l|Tde2|Tms2|mKIAA1253	serine incorporator 1	protein-coding	4.95059554502829	4.5865486421757	5.70858045085502	5.51139620351415	5.13129945841106	4.70446335837107	4.77186839995678	5.27288934202309	-0.509007573878421	0.210504193526484	0.514976722960957
Merged-chr9-65361160-4	chr9	65361035	65361235	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111145)	promoter-TSS (NM_001111145)	75.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	5.53761542638603	5.17258093575685	5.85037865653479	6.22292571212778	4.9951607692305	5.231237447254	5.63881046537355	5.53465931153452	-0.678647876870637	0.0568322330942681	0.24972253789238
Merged-chr7-128115708-2	chr7	128115608	128115808	+	783.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_008401, intron 24 of 29)	intron (NM_008401, intron 24 of 29)	-13860.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	2.48687460387662	2.47358141139216	2.41674514367885	2.42146027160298	2.47275132130708	2.72395644688243	2.66757816922995	2.6162380136186	0.909042583052019	0.173802072749941	0.467948602702518
Merged-chr11-100713905-4	chr11	100713837	100714037	+	863.4874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029307)	promoter-TSS (NM_029307)	87.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	4.13033882877093	3.75143203813749	3.84831387847395	4.12015391045167	3.75143496971272	3.96923289636836	3.83282726448978	4.1283528461345	-0.158990434788146	0.725256236879698	0.890789164909926
Merged-chr3-63929337-4	chr3	63929204	63929404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357824)	promoter-TSS (NM_001357824)	168.0	NM_177856	329659.0	Mm.39342	NM_177856	ENSMUSG00000048581	E130311K13Rik	-	RIKEN cDNA E130311K13 gene	protein-coding	7.69631691004193	7.6064104545432	8.09995770944971	7.96426364331145	7.41844589896814	7.55012397976394	7.61005986599258	7.59894006912362	-0.415338667607245	0.027455981906792	0.157973432717124
Merged-chr4-89310646-2	chr4	89310546	89310746	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007670, intron 1 of 1)	CpG	386.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	5.45861522917482	5.78645234954692	5.54495886185582	5.84076908413145	5.35900700782675	5.89741155022308	5.51710792577599	5.395537955756	-0.220810548731063	0.447187758655087	0.732794103490352
Merged-chr13-36282279-2	chr13	36282179	36282379	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 3 of 5)	intron (NM_001039189, intron 3 of 5)	164636.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	3.12393774837963	2.90856396085293	3.06414131220205	2.86968146355106	3.13003095410185	3.23614503825897	3.22356619291292	3.18011665212326	0.831477020239554	0.136874555037494	0.411427913943067
Merged-chr2-38472969-3	chr2	38472895	38473095	+	943.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38702.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	3.79400948714872	3.85618144415536	3.89207282702233	4.15166728871334	3.59659147152097	3.86179159275598	3.56139646745083	3.57238377767027	-0.880934879140487	0.0642439484244207	0.269385567299078
Merged-chr13-120321017-6	chr13	120320915	120321115	+	827.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	4153.0	NM_153523	236219.0	Mm.302175	NM_153523	ENSMUSG00000095821	Tcstv3	-	2-cell-stage, variable group, member 3	protein-coding	3.07212449481831	3.22963247596695	3.36094219336725	3.01193290880049	3.06532104724736	3.42249466431574	3.12430179327964	3.19396788729708	0.136803576025376	0.808577678746224	0.926120373247686
Merged-chr13-9098423-4	chr13	9098311	9098511	+	874.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	4530.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	4.19434279163406	4.47798424909177	4.04559608104335	3.88265697872434	4.25990536321161	4.5409110707484	4.35037991257854	4.23856392933944	0.466149283091783	0.264935798645876	0.576781318605745
Merged-chr1-134513830-6	chr1	134513700	134513900	+	947.14447	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19140.0	NM_145510	98710.0	Mm.198119	NM_145510	ENSMUSG00000042229	Rabif	AI842864|AW549708|E130318E12Rik|MSS4|RASGFR3	RAB interacting factor	protein-coding	3.21466362975964	3.16186331923841	3.58549493479888	3.18152755019166	3.17297831420051	3.19756515089616	3.3191920239022	3.4881119283618	0.0268126673125254	0.96126181748008	0.986118879213657
Merged-chr4-59009902-3	chr4	59009792	59009992	+	693.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033165, intron 1 of 3)	PB1D7|SINE|Alu	6699.0	NM_001033165	72429.0	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	3.93852694468347	3.65264345510623	3.69915411517501	3.86344529368698	3.52571633477755	3.51898322820323	3.78456437352802	3.7984180336362	-0.414312411531309	0.383631141799295	0.685496788167566
Merged-chr2-167349360-4	chr2	167349277	167349477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019835)	promoter-TSS (NM_019835)	-199.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	7.98309789628412	8.25732317733169	7.97024712419335	7.94474855185571	8.28607528259516	8.42203415073018	8.37094763249852	8.11255860952791	0.330275962187421	0.0502838591192089	0.232628556144769
Merged-chr6-87914043-4	chr6	87913941	87914141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173737)	promoter-TSS (NM_173737)	65.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	5.88324599954681	5.78405491329346	6.07061541266475	5.88512004995503	5.71988526701467	5.72973817463383	5.58230565059717	5.88009653337908	-0.285332443702514	0.258723968481867	0.570489393947544
Merged-chr1-59143016-2	chr1	59142916	59143116	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164682, intron 12 of 22)	B3|SINE|B2	18620.0	NM_145143	227157.0	Mm.474049	NM_145143	ENSMUSG00000079550	Mpp4	Dlg6	membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4)	protein-coding	3.10613108912186	3.56912192814112	3.1064646455481	3.19180003382222	3.25651482635853	3.34730482144396	3.44406042949059	3.50683743624261	0.464086083860563	0.398597948420875	0.696793179038619
Merged-chr1-128548897-3	chr1	128548763	128548963	+	849.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	43436.0	NM_009911	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	3.53501117652553	3.74710763176228	3.53546318504391	3.24217091879771	4.12509648906163	4.12598961276471	4.06467675817851	3.53363494811942	1.3898218345846	0.00557553509671919	0.0514735424966764
Merged-chr7-84171473-4	chr7	84171343	84171543	+	899.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19550.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	3.78621208539305	3.5999937907112	3.78671488845031	3.97315038002417	4.3662537796577	3.90880623507084	4.46304724752783	4.26346365838954	1.21060941560903	0.00773985146988996	0.0656129928804598
Merged-chr4-43498882-4	chr4	43498800	43499000	+	832.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001013377, exon 6 of 12)	exon (NM_001013377, exon 6 of 12)	5535.0	NM_001037913	622404.0	Mm.289109	NM_001037913	ENSMUSG00000028461	Ccdc107	-	coiled-coil domain containing 107	protein-coding	3.37233972282493	3.37982406850284	3.57056372583683	3.27914262808795	3.05460268341868	3.25003132253915	3.12821408090178	3.13722030076232	-0.992604771021811	0.0736938401331769	0.292404800462024
Merged-chr14-26858490-4	chr14	26858410	26858610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-36094.0	NM_001170748	142687.0	Mm.138259	NM_080856	ENSMUSG00000021898	Asb14	Asb-14	ankyrin repeat and SOCS box-containing 14	protein-coding	5.44696418586513	5.07614329299624	5.86551854336005	5.86771764248498	5.63377803982973	5.92398551264767	6.00073983223317	5.90497150527505	0.413363114496664	0.181015435750141	0.477433493951134
Merged-chr12-55836269-4	chr12	55836173	55836373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037756)	promoter-TSS (NM_001037756)	-93.0	NM_001037756	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	7.71121485900044	7.83062374038061	7.76983320980707	8.28375439661647	8.00291222286406	7.98662624009587	8.15725919790125	7.90887175095209	0.106935501160769	0.585243426370682	0.818041249764729
Merged-chr2-34108917-3	chr2	34108835	34109035	+	905.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1200.0	NR_130173	329387.0	Mm.125817	NR_130173	ENSMUSG00000087461	C230014O12Rik	-	RIKEN cDNA C230014O12 gene	ncRNA	3.48364739914118	3.64958756254196	3.59827381742812	3.81234688521588	3.93798903551393	3.47184862806093	3.63730457542756	3.64977970166024	0.132582222229647	0.789771729141968	0.918593426288807
Merged-chr14-77524535-2	chr14	77524492	77524692	+	910.333374	f0_c57.idr|f1_balb.idr	intron (NM_001253759, intron 7 of 19)	intron (NM_001253759, intron 7 of 19)	-17724.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	2.34516565752771	2.29557433474338	2.34534889440251	2.05118902917913	3.11597488433803	2.91037949743028	3.16394484570861	3.07921647107686	6.50711911965402	2.4639639519862e-11	2.08785571977248e-09
Merged-chr13-52628740-4	chr13	52628649	52628849	+	935.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 7 of 13)	intron (NM_011518, intron 7 of 13)	31867.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	4.61085891254612	4.59260099692125	4.47988984553282	4.6808648309776	5.25524178116955	4.61201199154757	4.85117730684054	4.76544766834712	0.6429098161656	0.0744374307444834	0.294055367088356
Merged-chr14-101658354-3	chr14	101658275	101658475	+	953.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016723, intron 2 of 8)	intron (NM_016723, intron 2 of 8)	4408.0	NM_016723	50933.0	Mm.275970	NM_016723	ENSMUSG00000022111	Uchl3	-	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	protein-coding	3.71155898065244	3.21866987897107	3.66228377567031	3.79499003634524	3.67265917928216	3.67260057120978	3.48701981754456	3.55447515862709	-0.0678662898275493	0.895581809768288	0.960922197161503
Merged-chr4-129512275-7	chr4	129512172	129512372	+	997.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1309.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	4.89657090432455	6.04233778611342	5.18131560914524	4.37160214761726	5.31233676144684	5.38858544757263	4.83390563597411	5.00775823685476	-0.243160843202185	0.705364448855261	0.881685774219734
Merged-chr1-173409203-4	chr1	173409109	173409309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11395.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	7.22157988166243	6.93496416826023	6.70488738661312	6.90688518316576	6.73251815793765	6.83545856152062	6.77291201790067	6.60503048513308	-0.3019309239519	0.150338247683518	0.4329904560923
Merged-chr17-31834857-3	chr17	31834766	31834966	+	941.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	20938.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	3.36582850541878	3.11963293682882	3.21539166995732	2.87281858551812	4.3823548794317	4.25716378148122	4.32813719019516	4.12174823393926	3.84020329304328	1.27560134356717e-13	1.62135764346014e-11
Merged-chr2-77304743-4	chr2	77304638	77304838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24146.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	6.43716749173807	5.9886972613097	6.11129773885453	6.111275244068	6.29385944586966	6.28690066652374	6.21724725611036	5.99882435668271	0.063878112940327	0.789969883053711	0.918733825235366
Merged-chr2-23023939-4	chr2	23023839	23024039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	16302.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	5.19563034494845	5.36474365623676	5.19650428163514	5.2509499102615	5.56447531973705	5.5913370504279	5.67134380942043	5.67311436009895	0.641709960818112	0.0173939766956414	0.116470918835283
Merged-chr14-57525515-3	chr14	57525376	57525576	+	804.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145837, exon 2 of 3)	exon (NM_145837, exon 2 of 3)	647.0	NM_145837	239114.0	Mm.390726	NM_145837	ENSMUSG00000050222	Il17d	AI462269|IL-17D	interleukin 17D	protein-coding	3.45442510344124	3.2789493513498	3.99654138334048	3.35257820420595	3.41287577697382	3.3218760511566	3.32512929718465	3.50802257473161	-0.504290703038866	0.364050792804097	0.668959979169087
Merged-chr7-101066709-4	chr7	101066606	101066806	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42069.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	4.57727466043461	4.32184521839702	4.17080767851236	3.48805106004681	6.12631696816232	5.76131537947532	5.88935401804872	6.19867515068246	3.68342653512284	3.29805091870746e-22	1.47642746127471e-19
Merged-chr6-124847465-4	chr6	124847352	124847552	+	959.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013534, intron 9 of 14)	intron (NM_013534, intron 9 of 14)	-7177.0	NM_013530	14695.0	Mm.68889	NM_013530	ENSMUSG00000023439	Gnb3	Gnb-3	guanine nucleotide binding protein (G protein), beta 3	protein-coding	5.28503770245361	5.08718651659242	4.49521721313511	4.63438348533082	5.18121303601227	5.05367461088265	4.74067403657166	5.01519139283847	0.207592155451208	0.575546059775372	0.813075180882231
Merged-chr15-10714774-4	chr15	10714634	10714834	+	924.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166408)	promoter-TSS (NM_001166408)	-102.0	NR_045063	75259.0	Mm.33928	NR_045063	ENSMUSG00000096971	4930556M19Rik	1700009D01Rik|C130022M03Rik	RIKEN cDNA 4930556M19 gene	ncRNA	4.99946505982006	4.7426599237215	5.45276543792975	5.36081212376375	4.52299463662188	4.95556028460864	4.62931408795064	5.0631580467085	-0.730522096824268	0.0483941279013977	0.227114500553411
Merged-chr11-100770989-3	chr11	100770896	100771096	+	810.616638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031871)	promoter-TSS (NM_031871)	-39.0	NM_031871	80860.0	Mm.37308	NM_031871	ENSMUSG00000017747	Ghdc	D11Lgp1e	GH3 domain containing	protein-coding	3.57711055062977	3.89130129440396	3.78145909735232	3.6347246161316	3.46427563574651	3.63709998514533	3.50804191973391	3.51931377254033	-0.622099038247267	0.200509810595116	0.502543620512921
Merged-chr12-102296604-4	chr12	102296503	102296703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	12962.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	6.71397454709883	6.97467577188905	6.48973285468602	6.31244444268255	6.52147045615905	6.39263576560715	5.98520526395523	5.93792551867455	-0.588375054043808	0.0306158313187266	0.169521918120236
Merged-chr11-78803941-7	chr11	78803837	78804037	+	991.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22658.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	4.1036863908651	4.22701610218903	4.37776344256529	4.22721536716934	3.83599190099422	4.50732862929017	4.27348127677466	4.5290563481445	0.168437626970777	0.694820569998046	0.876145006942513
Merged-chr16-11000040-4	chr16	10999947	11000147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6926.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	8.34283677530851	8.48211731755866	8.80639270942103	8.50280422999694	8.14127357513767	7.9456837746727	8.44353705320323	8.08684315760631	-0.475768287956596	0.00997459789511791	0.0787905785791363
Merged-chr3-79864974-4	chr3	79864873	79865073	+	968.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20957.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	4.64389617889657	4.31227917215096	4.64463455901082	4.94722174738815	5.39521144952949	5.1162418303008	5.82586330985935	5.54694075396549	1.53512820890945	3.17148700719024e-05	0.000761102335157894
Merged-chr12-8922967-4	chr12	8922874	8923074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008640, intron 1 of 6)	intron (NM_008640, intron 1 of 6)	1667.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	6.25655134591886	6.10668983896718	6.76898259292222	6.65375135413023	6.6483436670029	6.69067563939781	6.54555703655642	6.65088375539912	0.220526255168794	0.358404876857413	0.664380976348606
Merged-chr14-31394987-4	chr14	31394879	31395079	+	899.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	22698.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	5.00298978527877	4.44243721964886	5.06546148157603	4.75178787020448	4.64328696408699	4.5448371122498	4.57694767749826	5.25593717489266	-0.0856465222417224	0.827337237507481	0.933797258511357
Merged-chr1-152761977-4	chr1	152761871	152762071	+	913.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	4334.0	NM_001346119	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.64981265813979	4.26875788407557	4.12280739355592	4.45205770441912	4.53943883094362	4.35482459888324	4.79488932105164	4.49462359642007	0.375342699895285	0.333154521479444	0.64399149963087
Merged-chr9-32211277-1	chr9	32211177	32211377	+	588.0	f0_balb.idr	intron (NM_001195632, intron 10 of 21)	MTC|LTR|ERVL-MaLR	-12972.0	NM_177379	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	3.48324223697342	2.91810586515561	2.92551796396213	3.28788044539573	3.08783703899991	3.25256486484822	3.41739267580129	3.83167679976744	0.872369285159806	0.169580731171675	0.462262058213413
Merged-chr6-128887540-4	chr6	128887429	128887629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289707)	promoter-TSS (NM_001289707)	-58.0	NM_001289706	93675.0	Mm.391513	NM_020257	ENSMUSG00000030365	Clec2i	Clr-g|Clrg|Dcl1|LCL-1|OCILrP2	C-type lectin domain family 2, member i	protein-coding	5.13229041837015	5.39379856586073	5.02531583766407	5.01431161062995	5.48477501473929	5.55600544327162	5.38387988244886	5.43465808060882	0.58169341830663	0.0449913110009905	0.21680566825127
Merged-chr6-135177478-4	chr6	135177315	135177515	+	796.408325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	-9200.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	3.91554790470147	3.83326914216748	3.60301523724385	3.36413236187348	4.00816294895803	4.21548208542566	3.70064294978161	3.34307905747677	0.477175023158238	0.3783037199829	0.680900730731587
Merged-chr13-8785482-3	chr13	8785340	8785540	+	810.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85604.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	3.17221910457343	3.37310169177013	3.17262732721001	3.10824644153911	3.17486450679084	3.16036807860036	2.90938737568649	3.17097635196521	-0.379303160170393	0.50530111840754	0.771429822864883
Merged-chr17-74819861-4	chr17	74819908	74820108	+	905.9541630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152817, intron 13 of 19)	RMER19C|LTR|ERVK	102258.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	3.83514608864767	3.5414703308785	3.53895134037884	4.12010701540039	4.09283304523713	4.37006279295743	4.0593462302524	3.83350456644235	0.810971214191037	0.107173721482892	0.361185644163901
Merged-chr17-8163531-3	chr17	8163424	8163624	+	977.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1994.0	NM_001197046	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	4.06017924965546	4.03268101338158	3.72793017070911	4.06197223680566	3.57208643925661	3.73064088241159	3.81679343599259	3.7259322898451	-0.82109843382955	0.0746154400204755	0.294518516343228
Merged-chr6-146192168-3	chr6	146192100	146192300	+	896.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 46 of 56)	intron (NM_019923, intron 46 of 56)	258078.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	2.68233541939842	2.89848127947099	2.74076776056503	2.80755854324815	2.21821261977805	2.28499417695657	2.34028745813618	2.34500206329418	-3.65598207499913	0.000274475863585818	0.00472134303870831
Merged-chr15-9430077-4	chr15	9429974	9430174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5954.0	NM_029341	75568.0	Mm.82143	NM_029341	ENSMUSG00000039676	Capsl	1700028N11Rik|AW125205	calcyphosine-like	protein-coding	5.55778308960526	6.04447066139431	5.91032195563507	6.37136329208625	6.08797293234656	6.03922383010485	6.26253044004071	6.20006066668258	0.187231114977178	0.498268448125146	0.76759838054097
Merged-chr11-119944807-4	chr11	119944682	119944882	+	948.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	1690.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	5.12013765780901	5.2301748569591	5.01887749079206	5.45876267735194	5.27152711104604	4.83535022318856	4.994826305305	5.18122475994711	-0.268515581390171	0.406444537415394	0.702950099801707
Merged-chr7-109968004-4	chr7	109967907	109968107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7537.0	NM_001311139	19347.0	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	6.86679672943396	6.83226712527535	6.74080193041148	6.94382294754754	6.99510793673737	6.74305779576685	6.84652047403981	6.88973414447348	0.0325113990083871	0.868366768981585	0.950731730651165
Merged-chr10-6983043-4	chr10	6982955	6983155	+	911.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039652, intron 4 of 5)	intron (NM_001039652, intron 4 of 5)	-2590.0	NM_001170801	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	5.01925386339917	4.58466841660874	4.82959088182877	5.29342910203156	4.63040064768933	4.1255430314705	4.69904934783558	4.5152616745309	-0.9947334691785	0.0142256117563166	0.101038821650114
Merged-chr18-12224604-4	chr18	12224519	12224719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008720, intron 1 of 24)	intron (NM_008720, intron 1 of 24)	11767.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	5.63098434830959	5.50593276477878	5.6058946551583	5.62171699544023	5.52068569693065	5.85607764549471	5.72552956228127	5.46303642636603	0.0847495916233676	0.750961694454762	0.90192697966077
Merged-chr16-97536004-4	chr16	97535919	97536119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003508)	promoter-TSS (NR_003508)	-62.0	NR_003508	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	6.70020663282025	6.88876307413553	6.48802631384976	6.87476177694304	6.66119449536263	6.84752052146209	6.84889761167242	6.91747233113969	0.0805832392656748	0.702092744114744	0.880010098877197
Merged-chr15-9070453-4	chr15	9070391	9070591	+	936.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286255)	promoter-TSS (NM_001286255)	-769.0	NM_001286255	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	4.40596507272576	4.50219336206853	4.49045639979493	4.3360532073577	4.86109141160652	4.24299377120563	4.29820246282673	4.44641234729554	0.16895259790265	0.669346167277848	0.863479905771059
Merged-chr10-4120835-3	chr10	4120720	4120920	+	916.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 26 of 27)	intron (NM_001170785, intron 26 of 27)	92300.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	3.31340584582389	3.57361175265111	3.57090696086833	3.79902182962992	2.78812976361185	3.17677109048995	3.05438921736729	2.8407824489719	-2.65287921095514	8.44261445301141e-05	0.00176176151905863
Merged-chr17-70751328-4	chr17	70751249	70751449	+	817.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	95428.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	3.46850553439073	3.71933233922822	3.58523012192228	3.55023436966253	3.70030274324011	4.04769899832258	3.39516048484532	3.63767280840271	0.40095383517349	0.421104834825873	0.713739716236704
Merged-chr7-48923822-1	chr7	48923722	48923922	+	710.333313	f0_balb.idr	Intergenic	Intergenic	-35251.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	3.66192543878044	3.4278877475382	3.84522926747386	3.65598076041097	3.36569132397883	3.1568336437395	3.4358699793534	3.66027321500791	-0.787501034275573	0.13965926687106	0.415585042485499
Merged-chr7-64279727-4	chr7	64279601	64279801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4A|LINE|L1	-7969.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	7.71241414781418	7.50161720433629	7.33220864803907	7.77320049228075	7.39565566586913	7.53013878697857	7.59557598741036	7.42878211600573	-0.150476165101085	0.42286920132803	0.714933300428204
Merged-chr11-82023525-2	chr11	82023425	82023625	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	-12052.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	2.98346908908757	3.40005299341116	2.98375825978386	3.27215434736536	3.26757193558621	3.51842210641241	3.22786794517465	3.29510039902153	0.54368987491232	0.342652889827892	0.6516462545027
Merged-chr15-85832282-4	chr15	85832178	85832378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033337)	promoter-TSS (NM_001033337)	-26.0	NM_001033337	239570.0	Mm.151748	NM_001033337	ENSMUSG00000035944	Ttc38	9030019H09	tetratricopeptide repeat domain 38	protein-coding	6.23374502952742	5.84805014438062	6.21627139300611	6.02638290600908	5.9269700750406	5.97656378848266	6.32507607745024	6.17384318495547	0.0358788405123934	0.885411922566846	0.956984644600969
Merged-chr4-132303348-4	chr4	132303273	132303473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081651)	promoter-TSS (NM_001081651)	-17.0	NM_001081651	242681.0	Mm.331927	NM_001081651	ENSMUSG00000089687	Rab42	9530096D07Rik|Rab42-ps	RAB42, member RAS oncogene family	protein-coding	5.89971369942742	6.33049184284817	5.94716340173345	5.95873083557181	6.06043670042124	5.95421416588637	6.02532163786743	6.09302045937805	-0.0143904435504147	0.953219875216665	0.983345411862723
Merged-chr15-58616197-3	chr15	58616091	58616291	+	924.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	200723.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	4.01242345702571	3.33359523502641	3.51076564179444	4.01678608689376	3.36902767904745	3.37955001508094	3.25493311978634	3.39196627439469	-1.36267028062545	0.0152899900818538	0.106292235964086
Merged-chr1-58773498-4	chr1	58773399	58773599	+	644.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-21875.0	NM_009812	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	4.05117628187158	4.09858109680184	3.96067810051569	3.65416816217351	3.80232908818326	3.63228421078177	3.79510199403973	4.09238692656725	-0.284821694689661	0.545630550035312	0.795970987775933
Merged-chr1-106678396-4	chr1	106678272	106678472	+	967.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	L1MB3|LINE|L1	35918.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	5.21847808779672	5.39128683149496	5.81286083244454	6.03397892360599	5.27345150572499	4.79180817216277	5.09173718592279	5.148281405787	-1.02178401709905	0.00295350220074566	0.0315893813894628
Merged-chr14-103816796-4	chr14	103816702	103816902	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007904, exon 7 of 7)	3' UTR (NM_007904, exon 7 of 7)	26899.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	5.20265114425331	5.44805036610475	5.34791739816269	5.35435659602198	4.99992198748887	5.032532170965	5.14695514646666	4.37443593712402	-0.794962819057466	0.0202132191624083	0.128996516485362
Merged-chr2-6723822-4	chr2	6723729	6723929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-2167.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	7.57374050694328	7.59343062691115	7.74133041455003	7.78012679003607	7.38641060721672	7.44149374402481	7.68799416956773	7.68847191733714	-0.165416330934168	0.357306836274524	0.663494847536382
Merged-chr2-145906069-3	chr2	145905970	145906170	+	713.916687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026425, intron 1 of 5)	B2_Mm1t|SINE|B2	2829.0	NM_001141965	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	3.13140399634559	3.54556470913713	3.13178186881956	2.53516143479554	3.67541697606026	3.31311503355331	3.5631194139123	3.2570386276882	1.0946279809667	0.116874329355909	0.378239423898528
Merged-chr11-105496846-4	chr11	105496728	105496928	+	898.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40093.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	4.1246658820924	4.34775409835119	4.12525845827079	4.43580583195088	4.32649706216408	4.43906634016174	4.05765289543802	4.47117088277405	0.12532551644918	0.756107423344689	0.904159100355911
Merged-chr2-128776645-4	chr2	128776506	128776706	+	890.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 10 of 18)	intron (NM_008587, intron 10 of 18)	-41697.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	3.89600618480036	3.70070106979557	3.8965766156478	3.84082808543422	3.91675498306682	3.86059774725094	3.67143686513628	4.11671309040028	0.191815852141805	0.667942780316515	0.862811446929372
Merged-chr19-14669097-2	chr19	14668997	14669197	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70914.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	3.58366730306796	3.50413403386211	3.63815170143033	3.56661859049152	3.81927348520161	3.58405106991282	3.51468772305283	3.87588179153563	0.435194482845359	0.360063950092312	0.665618946177557
Merged-chr9-20644053-3	chr9	20643950	20644150	+	887.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310746)	promoter-TSS (NM_001310746)	714.0	NM_025401	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	3.39705404618976	3.12038986894697	3.45190162804374	3.50971748985773	3.2002644297666	3.51186613320053	3.38429813686249	3.44995105688368	0.00739774298095035	0.988980001716361	0.995581873678262
Merged-chr11-118235159-4	chr11	118235116	118235316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	13376.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	6.40875528425061	6.81437076372194	6.49811573246194	6.12359577952147	6.70977270523199	6.78826866674673	6.89181519362037	6.51038492912006	0.372654427002505	0.124720654143191	0.392071138182701
Merged-chr6-72439128-4	chr6	72439025	72439225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046011, exon 1 of 1)	non-coding (NR_046011, exon 1 of 1)	433.0	NM_145569	232087.0	Mm.29815	NM_145569	ENSMUSG00000053907	Mat2a	D630045P18Rik	methionine adenosyltransferase II, alpha	protein-coding	7.59077428961846	8.35776874845994	7.55404573450383	7.67942248869521	8.353039283464	8.45817501025045	7.93091053946514	7.92159404367476	0.44631001752196	0.0619313333356396	0.263286769127247
Merged-chr18-82765406-4	chr18	82765292	82765492	+	959.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6353.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	4.86252854900839	4.58181105025383	4.1666962855065	4.30049466258027	4.61703219714943	4.54387893016649	4.47959360564146	4.72722501524496	0.223387666609822	0.566225363610258	0.807835530970224
Merged-chr10-51481597-4	chr10	51481508	51481708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001291893, exon 3 of 8)	exon (NM_001291893, exon 3 of 8)	996.0	NM_001291892	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	5.35656754729705	6.29698995865277	5.98910063936548	5.48161522959363	5.88283352079183	5.98655605591314	5.73320799313418	5.7334085540579	0.00867837611597671	0.977938093739869	0.992127472161317
Merged-chr11-87073446-3	chr11	87073315	87073515	+	898.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025638, intron 1 of 9)	intron (NM_025638, intron 1 of 9)	722.0	NM_025638	66569.0	Mm.281887	NM_025638	ENSMUSG00000061666	Gdpd1	2610020H15Rik	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding	3.47448838171261	3.39194721511691	3.36373270455835	3.22394744573575	3.46800955700882	3.53532354599306	3.29262348577406	3.52511362873743	0.352615000700519	0.488076849493028	0.761126159857708
Merged-chr17-5569287-4	chr17	5569192	5569392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	76692.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	7.68463667718943	7.50918183327697	7.73440545691979	7.95871951856717	7.67809143711444	7.58826744435156	7.72794115376314	7.55063757908521	-0.13339632441318	0.465184532079514	0.745781128683194
Merged-chr16-90323108-4	chr16	90322998	90323198	+	987.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38595.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	4.59112201841128	4.90293526656864	4.67492568486724	4.84932439858867	4.63791817792672	4.92554425853177	4.87238286733922	4.71148200003529	0.0286330373331689	0.933019246687789	0.975869550884564
Merged-chr10-40302271-4	chr10	40302157	40302357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007444)	promoter-TSS (NM_007444)	-69.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	8.34372712306121	8.08581063732883	7.92320082172499	8.12318400311874	8.21864873336502	8.22039548878627	8.36749471955248	7.93982080462143	0.0882640548720326	0.618955783036297	0.836211776956697
Merged-chr15-59392180-3	chr15	59392019	59392219	+	983.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	17921.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	3.97422356615693	3.58357882690458	4.2687527349468	4.25071556219917	3.60300552530151	3.89098503964365	3.80896248728872	3.87429088531862	-0.729214937005799	0.133513520711026	0.406856703942552
Merged-chr13-60644799-4	chr13	60644691	60644891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	ORR1E|LTR|ERVL-MaLR	42580.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	7.29679676753265	6.98048947504499	6.88734613810088	7.22985759619927	6.65713804295788	6.9509628096706	6.83901650387136	6.89594758443335	-0.394975322677226	0.0562310996598858	0.248307800899002
Merged-chr11-50025030-4	chr11	50024941	50025141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290749)	promoter-TSS (NM_001290749)	-290.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	7.06123633951697	7.36809323134468	7.3078016325733	7.00725930206379	7.14061703444879	7.28771404362056	6.96401029876643	7.24045543041651	-0.0357113050972849	0.85768844459204	0.946392149155271
Merged-chr6-136492390-4	chr6	136492297	136492497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26454.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	5.74589930576238	5.89082548534373	5.77276683121133	5.99091521734743	6.09033991930237	6.26225554400553	5.99631425225312	5.91358890815868	0.321190199406086	0.19229501079482	0.491838246913812
Merged-chr15-99457847-4	chr15	99457739	99457939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001884)	promoter-TSS (NM_001001884)	-91.0	NM_001001884	380969.0	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	6.68945586777545	6.89307103130503	6.70618211332136	6.61908645112289	7.04282768158734	7.2989832262887	7.08726326263155	6.81926405778204	0.481404867326937	0.0196065466886336	0.126273469666146
Merged-chr3-100922218-4	chr3	100922129	100922329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165953)	promoter-TSS (NM_001165953)	-264.0	NM_001165952	229644.0	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	9.60798526154864	9.74984292820319	9.7448852819007	9.84739332495731	9.56865837812046	9.78744491120775	9.91045091087776	9.56987331543375	-0.0319861754100603	0.83152653061778	0.935470632572198
Merged-chr13-20508291-2	chr13	20508186	20508386	+	704.583374	f0_balb.idr|f1_balb.idr	intron (NM_198093, intron 1 of 6)	intron (NM_198093, intron 1 of 6)	35296.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.40485808258506	2.97412289752847	3.58132061593684	3.51947862169626	2.6717961937226	2.68744963948355	2.735046810795	2.74115072175549	-3.58419971655807	1.7909260604582e-05	0.000462769614507566
Merged-chr9-62235814-2	chr9	62235714	62235914	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8286.0	NR_040769	330958.0	Mm.411888	NR_040769	ENSMUSG00000111232	A730043L09Rik	A730043L09	RIKEN cDNA A730043L09 gene	ncRNA	2.79391767270725	3.37539795251425	2.93843057603471	2.93208808845238	2.96730257943404	3.18095730936835	3.47268513331837	3.12803336896374	0.654215621877679	0.294767870530235	0.606879813945882
Merged-chr1-128548418-3	chr1	128548298	128548498	+	967.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43901.0	NM_009911	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	3.67354154945083	3.67065129354747	3.81275927349956	3.49668193661436	5.16941700323748	5.0447200371576	4.96123525395092	4.48336796005864	3.14947127556485	9.24640209929019e-14	1.2187956574544e-11
Merged-chr11-60538024-4	chr11	60537939	60538139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172943, exon 1 of 4)	5' UTR (NM_172943, exon 1 of 4)	356.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	6.69633850521579	6.73587623720602	6.12542570600095	6.14792785104793	6.88924677387068	7.28644105246829	6.80300914402126	6.67780200421958	0.687125134409159	0.00790996443814741	0.0666773281315602
Merged-chr11-34054566-4	chr11	34054459	34054659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 3 of 20)	intron (NM_010696, intron 3 of 20)	7631.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	6.12725073338249	6.08379182431645	5.7480730940865	6.11480702979124	6.42978330356057	6.42095346370507	6.4505321470581	5.99436105899384	0.464437106336345	0.0592655810767414	0.256549565357473
Merged-chr18-70476566-4	chr18	70476472	70476672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289650, intron 5 of 8)	intron (NM_001289650, intron 5 of 8)	3906.0	NM_001289650	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	6.08912792357692	6.17920155297983	6.06880434567991	5.96893725079249	6.20960865022895	6.40574720123826	6.52851787146809	5.99807241589667	0.34443695159992	0.152317063347919	0.436288782778331
Merged-chr12-99390914-4	chr12	99390812	99391012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 1 of 5)	intron (NM_183186, intron 1 of 5)	59162.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	6.28721291154667	6.25271870459792	6.3064017858639	5.76240547162989	6.32844686169006	6.18115591091075	5.72359041643107	6.64456870830602	0.15878490833022	0.583889110508453	0.817485282428486
Merged-chr4-95326092-3	chr4	95325984	95326184	+	634.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-231423.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	3.19577892104409	3.38075182041712	3.55875808459729	3.83908008592009	3.51768893106727	3.50331153393733	3.59556304596297	3.60838182039559	0.0752304520337077	0.889369592560932	0.958519732455951
Merged-chr7-4203996-4	chr7	4203918	4204118	+	951.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33736.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	5.04387545564675	4.55394593356161	5.01223071514554	5.1985673731634	5.13280319562322	5.0103377662445	4.73587369171508	4.71411916021446	-0.128672491576559	0.719144026324876	0.887785782541509
Merged-chr14-70931110-3	chr14	70931035	70931235	+	993.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	41028.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	3.64072351362235	3.45980491035153	3.79057760518357	4.04769206115231	3.53505961628491	3.39135496213342	3.72685242360986	3.52919238857479	-0.670338691741535	0.194938941922964	0.495696890112538
Merged-chr16-11001884-4	chr16	11001792	11001992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7006.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	8.16572639968176	8.35437456409044	8.51652609473215	8.38051481181171	8.18227160699548	8.23411062517782	8.42971398882161	8.16168204429025	-0.134941418540665	0.410263198504683	0.705668466162555
Merged-chr1-91539927-2	chr1	91539834	91540034	+	929.8333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039126)	promoter-TSS (NM_001039126)	-631.0	NM_001039126	65247.0	Mm.234152	NM_023046	ENSMUSG00000026311	Asb1	1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146	ankyrin repeat and SOCS box-containing 1	protein-coding	3.67028753458543	3.43455875943756	3.51955336020466	3.23095426337858	3.56344160925296	3.46259215743581	3.20995929222688	3.66858051683472	0.0880427753250747	0.86841411648775	0.950742877146131
Merged-chr5-33658038-4	chr5	33657939	33658139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310541)	promoter-TSS (NM_001310541)	-62.0	NM_001356985	68366.0	Mm.491151	NM_026698	ENSMUSG00000019295	Tmem129	0610039G24Rik|2410015J15Rik|AA409575	transmembrane protein 129	protein-coding	8.43514886342489	8.5497030568637	8.44677820749054	8.36361212199022	8.56304885798584	8.48361041403347	8.69369207335502	8.48160163711641	0.140405767727557	0.350804589952065	0.658298486942027
Merged-chr7-27861064-4	chr7	27860939	27861139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024726, intron 1 of 4)	intron (NM_001024726, intron 1 of 4)	454.0	NM_001024726	545938.0	Mm.458180	NM_001024726	ENSMUSG00000020420	Zfp607a	4732475C15Rik|Zfp607	zinc finger protein 607A	protein-coding	5.2435787084484	5.53322072581297	5.08483348417533	4.67178596525612	5.25734884124508	5.53118850014719	5.15720802597905	4.59301502919448	0.0232765557680894	0.951985301651321	0.982960452974344
Merged-chr4-141637737-3	chr4	141637673	141637873	+	964.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033150, intron 6 of 19)	intron (NM_001033150, intron 6 of 19)	-13939.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	4.23203557004501	3.67137447381681	4.30908870997788	4.68485198789576	3.65691471615682	3.63587258546671	3.36272206133594	3.64222204223063	-2.0290434492569	0.000200674638629666	0.00365128325741845
Merged-chr14-50944534-4	chr14	50944422	50944622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013632, exon 1 of 6)	5' UTR (NM_013632, exon 1 of 6)	219.0	NM_013632	18950.0	Mm.17932	NM_013632	ENSMUSG00000115338	Pnp	AL024301|AU015798|Np|Np-1|Np-2|Pnp1	purine-nucleoside phosphorylase	protein-coding	7.44876532102879	7.44259255035127	7.3701364887848	7.13914466486708	7.71945834455869	7.7986677522872	7.80689144132958	7.44488552487289	0.470586190311089	0.0119098903704172	0.0894045651419452
Merged-chr3-101595399-4	chr3	101595319	101595519	+	912.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	9288.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	4.49109606563378	4.22476855074226	4.68573408686779	4.9703478344763	4.42798986677599	4.2868092367254	4.4291856434834	4.64616954254648	-0.413092384925581	0.308414249073334	0.620793493346942
Merged-chr7-43637300-4	chr7	43637163	43637363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028236, intron 2 of 5)	intron (NM_028236, intron 2 of 5)	2524.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	6.38004762107603	6.53327599592631	6.51788950388453	6.0738163167098	6.68695803689092	6.44503412030339	6.40127858263022	6.57633407184994	0.244014562085664	0.296416450430933	0.608478404731474
Merged-chr5-110269291-3	chr5	110269230	110269430	+	657.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028273, intron 1 of 5)	intron (NM_028273, intron 1 of 5)	569.0	NM_028273	72542.0	Mm.61682	NM_028273	ENSMUSG00000029500	Pgam5	2610528A17Rik	phosphoglycerate mutase family member 5	protein-coding	3.25502279783192	3.28735444845712	3.60986701783348	3.15254700479539	3.31146295688951	3.30777959546764	3.12265866090527	3.06611574510264	-0.446014194451797	0.429870626896348	0.720635978674715
Merged-chr7-90442286-4	chr7	90442130	90442330	+	831.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145151)	promoter-TSS (NM_145151)	-551.0	NR_073436	233490.0	Mm.29496	NM_145151	ENSMUSG00000051451	Crebzf	1110034C16Rik|6330417B10Rik|LAZip|LAZipII|SMILE|Zf	CREB/ATF bZIP transcription factor	protein-coding	3.38168132078265	3.75500339721592	3.62341664251986	3.84500321392792	3.50581655426412	3.74078780762352	3.81043059398501	3.87084786072306	0.178688937439963	0.7189494629622	0.887684154524562
Merged-chr14-7817956-4	chr14	7817866	7818066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134080)	promoter-TSS (NM_134080)	9.0	NM_134080	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	7.68421610182907	7.49498607034484	7.47022612629787	7.83503440530621	7.27835993325086	7.30433124866132	7.54090829498574	7.00491480952771	-0.455110967203473	0.0233786891950577	0.141925093237954
Merged-chr8-61920594-4	chr8	61920475	61920675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7512.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	7.83090458811888	7.60987954662953	7.52320935240199	7.87777108915307	7.82470044426097	7.77420838162364	7.71035515212967	7.72686011768679	0.045565439583618	0.794691419600716	0.920584812443453
Merged-chr16-20622533-4	chr16	20622421	20622621	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177940, intron 2 of 18)	intron (NM_177940, intron 2 of 18)	-1243.0	NM_028420	73047.0	Mm.425977	NM_028420	ENSMUSG00000051146	Camk2n2	2900075A18Rik	calcium/calmodulin-dependent protein kinase II inhibitor 2	protein-coding	5.0579186120586	5.17237029473105	5.16006149251132	5.55826963846969	5.31941373214503	4.88034716393028	5.31515095764156	5.28041131503371	-0.105658414632932	0.744901767170396	0.899383625692019
Merged-chr12-80938839-4	chr12	80938738	80938938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6561.0	NR_045057	100504661.0	Mm.442322	NR_045057	ENSMUSG00000112880	Gm20337	-	predicted gene, 20337	ncRNA	6.33635883802432	6.07034759816818	6.05881521996958	6.34615244397589	6.54664250078066	6.40134465069668	6.02792331248526	6.4023563350383	0.220566674887438	0.362451010238203	0.667648124413267
Merged-chr2-60815031-4	chr2	60814938	60815138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	66400.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	5.96511988402353	5.35551244397533	6.44806824772647	6.20677947694117	5.89800903276259	5.64694073022136	6.03941601599582	5.72308633983593	-0.344336834899073	0.272466704370859	0.583907615776883
Merged-chr4-114665879-3	chr4	114665766	114665966	+	711.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-155854.0	NR_033617	433746.0	Mm.388908	NR_033617	ENSMUSG00000055198	Gm12830	-	predicted gene 12830	ncRNA	3.38458980858019	3.44793563911225	3.45124306924401	3.50181705358419	3.96189594146118	4.26831212125786	3.96014158521997	3.68609150408708	1.57276344423576	0.00116226948599211	0.015188026389468
Merged-chr2-145888166-4	chr2	145888067	145888267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028724)	TTS (NM_028724)	-15074.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	6.05115666544473	5.7448953764629	6.21435869942823	6.60341661043568	5.82724745915942	6.18488985319531	6.27362733883111	6.19075648909131	-0.131329561107749	0.647217249437235	0.851605116430591
Merged-chr11-97988177-4	chr11	97988083	97988283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1737.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	5.52752903022028	5.61968208772583	5.38542716404095	5.10053731515087	5.71406561838254	5.82981424564885	5.32822907863708	5.49727095894007	0.347140896714098	0.247688204564889	0.558888728359504
Merged-chr4-21727739-4	chr4	21727689	21727889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290420)	promoter-TSS (NM_001290420)	88.0	NM_001290420	51813.0	Mm.278584	NM_016746	ENSMUSG00000028252	Ccnc	AI451004|AU020987|CG1C	cyclin C	protein-coding	6.68085192729861	6.67580205002173	7.00299299194826	6.99959245710537	6.60050993778576	6.53157700975157	6.76411872834963	6.86150474912524	-0.23281238297268	0.27927004885265	0.591418369203021
Merged-chr8-94397474-4	chr8	94397362	94397562	+	874.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	11033.0	NM_022331	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	3.88153931374021	4.62110155849034	3.69645493882269	3.85752978480586	4.30169410881441	4.17208043237598	4.17246373777819	4.64555321937019	0.656228422129218	0.179115244395362	0.475256988772739
Merged-chr12-37251190-1	chr12	37251090	37251290	+	690.5	f0_balb.idr	intron (NM_178767, intron 2 of 12)	intron (NM_178767, intron 2 of 12)	9551.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	3.50317579513852	3.57132378975151	3.71789461375476	3.78461683077573	3.15445185861143	3.78643622544797	3.74975868489243	3.55865321267401	-0.234526442086162	0.659845124882492	0.858583021675618
Merged-chr9-108346942-2	chr9	108346842	108347042	+	797.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311157)	promoter-TSS (NM_001311157)	-889.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	2.89551647031494	3.30513488917026	3.26280631957913	2.56102937512828	2.76654398475001	3.14374738410158	3.13848298422297	3.31300045175384	0.239260403891167	0.726363801851246	0.891042483316728
Merged-chr15-27926651-4	chr15	27926555	27926755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	99193.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	6.14850095324077	6.28666512084658	5.56861499223586	5.34477570654026	6.39285012904156	6.28539417556815	6.11791248009453	5.95709476320547	0.491493574437719	0.113800431852664	0.373103335015803
Merged-chr17-34693297-3	chr17	34693221	34693421	+	863.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031176, intron 12 of 32)	intron (NM_031176, intron 12 of 32)	22786.0	NM_031176	81877.0	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding	2.91812351321844	3.0676219999797	2.9184096639659	2.94420499392952	3.54355090172103	3.34980588242323	3.38019787998967	3.17668299590832	1.57645936769685	0.00482738875166171	0.0463271813340338
Merged-chr2-11713646-4	chr2	11713546	11713746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271499, intron 1 of 6)	RLTR17|LTR|ERVK	7934.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	5.63661862098747	5.60299593981998	5.46450100895844	5.26356871588154	6.1070570913525	6.12120700259956	6.1109017547094	5.73716310732165	0.90005310733676	0.000705017938645112	0.0101790003762313
Merged-chr14-21683017-4	chr14	21682903	21683103	+	821.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013826, intron 3 of 3)	intron (NM_001013826, intron 3 of 3)	31573.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	4.05168914676434	3.72126446309562	3.91922978226672	4.00581705692623	3.86942501066299	3.52484747920945	3.85519105767835	3.65885659862874	-0.552675311728197	0.238397135713639	0.548817073412948
Merged-chr11-69408746-4	chr11	69408652	69408852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001017426, exon 2 of 23)	5' UTR (NM_001017426, exon 2 of 23)	4923.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	8.12380552211419	8.48653947404034	8.53815344112664	8.2004963940908	8.4109353730214	8.34712070643671	8.30425020091767	8.10681356514224	-0.0597412353787277	0.733416637738692	0.894469888645001
Merged-chr8-45975866-4	chr8	45975774	45975974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033148)	promoter-TSS (NM_001033148)	346.0	NM_138668	192169.0	Mm.210882	NM_138668	ENSMUSG00000031634	Ufsp2	1810047C23Rik	UFM1-specific peptidase 2	protein-coding	5.55681743669443	4.84198233954334	5.3356386019034	5.45039477048648	5.76234238864438	5.51064143544757	5.39639356455708	5.26980430842656	0.315870786267208	0.324751428270209	0.63626429707804
Merged-chr16-21995465-4	chr16	21995377	21995577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083894)	promoter-TSS (NM_001083894)	65.0	NM_001289582	239759.0	Mm.33192	NM_153404	ENSMUSG00000044626	Liph	C130037N08Rik|D16Wsu119e|H06|Lpdlr|P3|PLA1B|lpd1|lpd2|mPA-PLA1	lipase, member H	protein-coding	7.05921131170576	7.66485912100063	6.48479076389613	6.68709050604242	7.00561468783155	6.99657468295532	6.43324569262593	6.3255520949785	-0.45458465171917	0.143962080480732	0.422642851071835
Merged-chr3-101800595-3	chr3	101800507	101800707	+	806.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35616.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	3.52120179468101	3.43752098580505	3.5216907560412	3.31658769153235	3.56475878469647	3.402754500779	3.55879129673581	3.46569356280263	0.20756751189931	0.675491305364118	0.866777974061798
Merged-chr5-105294120-4	chr5	105294018	105294218	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194336)	promoter-TSS (NM_194336)	-419.0	NM_194336	100702.0	Mm.491210	NM_194336	ENSMUSG00000104713	Gbp6	AI595338|Mpa2l	guanylate binding protein 6	protein-coding	4.68232756681418	4.86477587690709	4.47425168215637	3.94606671445875	5.06801090926158	4.89431364284504	4.62197477686978	4.60052996908601	0.61394021855933	0.143217718424431	0.421348019332587
Merged-chr4-59044967-4	chr4	59044878	59045078	+	911.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	9822.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	4.74893653751209	4.54572205449491	5.04853580986415	5.08984574139534	4.83880430556719	4.58560877495487	4.43837874440145	4.81981574631182	-0.419579909326854	0.256937797612108	0.568647554151895
Merged-chr17-12307918-4	chr17	12307849	12308049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357722, intron 1 of 25)	intron (NM_001357722, intron 1 of 25)	10711.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	6.00205655008649	5.73959071864449	5.93877306658494	6.09795035304733	5.77193057336531	5.76348176782999	5.9515627600831	5.91234152025085	-0.1783321995915	0.476266760206138	0.752835703413562
Merged-chr6-31427462-4	chr6	31427362	31427562	+	995.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 3 of 17)	intron (NM_013791, intron 3 of 17)	28634.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	4.46578952754687	4.89897115563288	5.14016839425893	4.73246451212424	4.27424990804721	4.34134062275892	4.96977516026456	4.86143519588264	-0.387415236878436	0.341620535922247	0.650639445837748
Merged-chr13-42254049-4	chr13	42253953	42254153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47423.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	5.70203657473175	5.71393751549743	5.77274202038091	5.75452835100047	5.27843109217475	5.28457103004503	5.38136675648912	5.51965505564292	-0.641014026464429	0.0164617675540102	0.112095298261446
Merged-chr10-128695831-3	chr10	128695741	128695941	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177411, intron 1 of 5)	intron (NM_177411, intron 1 of 5)	427.0	NM_177411	19344.0	Mm.12815	NM_011229	ENSMUSG00000000711	Rab5b	C030027M18Rik	RAB5B, member RAS oncogene family	protein-coding	5.69063589856536	5.99352463074695	5.92574325859564	5.64105557728782	5.69820529622794	5.73280056186595	5.68818307736198	5.6876122362392	-0.181459996001115	0.484857248004354	0.758880279356098
Merged-chr4-53860193-4	chr4	53860092	53860292	+	944.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028053, exon 6 of 6)	3' UTR (NM_028053, exon 6 of 6)	34147.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	4.83021341897562	4.74222135638469	4.8662527651927	5.13622688706873	4.64178063305291	4.77205077912471	4.48763864780103	4.75431219036421	-0.526153306804402	0.13011132059713	0.401543257404748
Merged-chr4-126256473-4	chr4	126256375	126256575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144941)	promoter-TSS (NM_144941)	-156.0	NM_001145970	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	7.69320134693384	8.07036173143054	7.86717100113897	7.42522182363002	7.30371611314582	7.68101627693797	7.1245379636773	7.48889025895272	-0.485735312523042	0.0264709022155511	0.154351793954347
Merged-chr4-141762814-3	chr4	141762759	141762959	+	847.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172338, exon 15 of 15)	3' UTR (NM_172338, exon 15 of 15)	16184.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	3.60269773832213	3.40655180986659	3.55770839010157	3.69115115200426	2.91367142073246	2.94014519455207	3.04239287727603	2.82916550853765	-2.80792202687003	2.7940372969194e-05	0.000682253107229592
Merged-chr2-10374128-3	chr2	10374014	10374214	+	812.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177386, intron 1 of 22)	CpG	1678.0	NM_177386	353282.0	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding	3.54010735955601	3.16214068692626	3.27581391898035	3.18161562762307	3.13867443216957	3.19811423884505	3.20413279783941	3.63034313240387	0.049019028875408	0.930576317664682	0.975012758004775
Merged-chr5-150594599-4	chr5	150594515	150594715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133898)	promoter-TSS (NM_133898)	-90.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	6.86985925769164	7.3657231314773	7.68758214856993	7.04511917860821	6.78197627023141	7.07652651042692	7.06559691198147	6.54889219149158	-0.539868042964097	0.0305248734028845	0.169149860953205
Merged-chr3-15590901-4	chr3	15590798	15590998	+	865.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15833.0	NM_001173460	668101.0	Mm.423523	NM_001173460	ENSMUSG00000095028	Sirpb1b	-	signal-regulatory protein beta 1B	protein-coding	5.31695558530179	5.62379687951848	5.57119476465232	5.43413252083762	4.99547675701449	4.76616655291673	4.60750552915484	4.52675380879358	-1.4170058760402	2.5731156038543e-05	0.000635502413486279
Merged-chr16-30504252-4	chr16	30504150	30504350	+	911.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR3|LTR|Gypsy	46328.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	4.25726443964594	4.81898259994232	3.99003605866567	4.17700554917456	4.78158786441785	4.52640234460199	4.37618186520871	4.51793204363329	0.486806490387557	0.252055484379868	0.563404638948455
Merged-chr11-90225019-4	chr11	90224928	90225128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24448.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	6.55064332590571	6.69026191689574	6.94594568342175	6.98208006370511	6.97286136385988	6.79575900312246	6.94767446918057	6.62996748171657	0.0482623021668208	0.824079412686792	0.932476232435989
Merged-chr10-61052337-3	chr10	61052209	61052409	+	664.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21006.0	NR_040638	327760.0	Mm.23529	NR_040638	ENSMUSG00000093568	Gm20611	4930565A17	predicted gene 20611	ncRNA	3.11070413316667	3.01920160950716	3.3606379459206	3.12560495810281	3.46900229451854	3.82886622382347	3.34725308959995	3.35876655147601	1.25546991652315	0.0211381493810257	0.132808927071412
Merged-chr18-15150318-2	chr18	15150218	15150418	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134112, intron 1 of 4)	CpG	1128.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	2.67366244215478	2.89980106496147	2.94416911957704	3.09629439113929	2.74249681126956	2.98917681979638	3.10257763792597	3.05922380321365	0.240154960532242	0.706565162260073	0.882113546590814
Merged-chr6-54973036-4	chr6	54972920	54973120	+	956.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172729)	promoter-TSS (NM_172729)	-408.0	NM_172729	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	4.21764679800606	4.03943671208124	3.4977786179149	4.12202455565013	4.43354616599329	3.94459538217468	4.56226030169899	3.76082892718111	0.560499941497591	0.281229122387007	0.59334817221824
Merged-chr9-88599620-4	chr9	88599530	88599730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040766)	promoter-TSS (NR_040766)	-387.0	NR_040766	320692.0	Mm.427378	NR_040766	ENSMUSG00000097073	9430037G07Rik	-	RIKEN cDNA 9430037G07 gene	ncRNA	8.17327617148653	8.36686408480899	8.3552012518652	8.10278614566626	8.16340973173774	8.04376073639724	8.31098127100567	8.08120592048919	-0.12131108776574	0.461833753328446	0.743501704400988
Merged-chr4-101741706-4	chr4	101741609	101741809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146146, intron 4 of 18)	intron (NM_146146, intron 4 of 18)	24302.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	6.81012220741314	6.63352144154751	7.01021123923056	6.8413295145164	7.03551887650827	7.04437244005795	7.2959844264398	6.90317728236557	0.345550360795199	0.0899390048368546	0.327456185436444
Merged-chr5-108447940-4	chr5	108447811	108448011	+	773.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172883, intron 1 of 9)	intron (NM_172883, intron 1 of 9)	1189.0	NM_001359977	243197.0	Mm.106818	NM_172883	ENSMUSG00000029490	Mfsd7a	4732482E20Rik|Mfsd7|Slc49a3	major facilitator superfamily domain containing 7A	protein-coding	4.18051195718064	4.52185715284917	3.8426952559314	3.88881428173801	3.90693946661196	3.96471872701937	3.98164094779138	3.8405752718761	-0.563730155372594	0.22280886225872	0.530983202865467
Merged-chr6-13838742-4	chr6	13838667	13838867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001330666, exon 2 of 4)	5' UTR (NM_001330666, exon 2 of 4)	1175.0	NM_001330666	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	5.0739549333864	5.20389332054153	5.17446107264103	4.90748024407998	5.16020531156154	5.31617774780947	5.32609810435736	5.29252794623016	0.354141900333624	0.23479956121908	0.544674682831863
Merged-chr10-127662256-4	chr10	127662173	127662373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122895, intron 5 of 5)	intron (NM_001122895, intron 5 of 5)	4430.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	6.53568664747769	6.39988942094953	6.2674533601621	6.39198950609525	6.42761727988988	6.67999063863688	6.6968712869933	6.6697694414217	0.312839914617307	0.144028081038043	0.422701306238685
Merged-chr19-59345881-4	chr19	59345790	59345990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033222)	promoter-TSS (NM_001033222)	-110.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	6.8673183870192	6.7993182132991	6.72765123764863	6.83067302845091	6.83458293673208	6.88932551515327	6.97173039039815	6.59767081428503	0.0307375821228925	0.877880578423683	0.954314763971155
Merged-chr12-69365999-4	chr12	69365893	69366093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6157.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	6.5564979146754	6.80752946752798	6.72378158938587	6.42119155757722	6.75378283661734	6.56195301439521	6.37051500855099	6.38029221854384	-0.132525459562417	0.562073342938344	0.805362233049029
Merged-chr10-120125334-4	chr10	120125243	120125443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12378.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	5.91505711326558	5.51185454908528	5.66425649550043	5.98320168818864	5.86812905669036	5.03076723948592	5.44572744222398	5.63465445220502	-0.408249386409491	0.196103799935528	0.497130636206247
Merged-chr5-110780614-4	chr5	110780519	110780719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347390)	promoter-TSS (NM_001347390)	-4.0	NM_001025562	56361.0	Mm.23528	NM_019700	ENSMUSG00000029507	Pus1	A730013B20Rik|MPUS1|mPus1p	pseudouridine synthase 1	protein-coding	6.95709717672751	7.49515116724714	6.87445816934855	6.88338305839429	7.50162290644631	7.70184325607318	7.21074383362554	7.10595163885408	0.437528087770274	0.0649528456677072	0.271096434958469
Merged-chr4-43960501-4	chr4	43960413	43960613	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 1 of 4)	B4A|SINE|B4	2811.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	4.79752191001385	4.94749637190695	4.5462478429014	4.38296280870488	4.8658844301691	5.01041357363171	5.16344329751803	5.12875084935142	0.750085901883432	0.0317968210077716	0.174003684363202
Merged-chr8-119353507-5	chr8	119353405	119353605	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	8967.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	4.46318880796921	4.57598086367615	4.72476125117682	4.54044713019106	4.48701454051526	4.26001176109744	4.26796055402256	4.46106241927987	-0.45373943594387	0.221741353041431	0.529830256279916
Merged-chr8-4238753-4	chr8	4238668	4238868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164172)	promoter-TSS (NM_001164172)	28.0	NM_001164172	26400.0	Mm.3906	NM_011944	ENSMUSG00000002948	Map2k7	5930412N11Rik|JNKK 2|Jnkk2|MAPKK 7|MEK 7|Mapkk7|Mek7|Mkk7|Prkmk7|sek2	mitogen-activated protein kinase kinase 7	protein-coding	8.78756595331171	8.91089524722262	9.00410054449779	8.76056448580262	9.19374207879788	9.2774941324001	9.22103650246644	8.96634965726004	0.376219105476224	0.013095543427897	0.095504885825234
Merged-chr19-12461888-4	chr19	12461868	12462068	+	922.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010821, exon 2 of 2)	exon (NM_010821, exon 2 of 2)	1189.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	4.22914834205791	4.50971088510209	4.32005881256246	4.38684325654633	4.14904188466601	4.65196964541016	4.16429991301852	4.02577363654792	-0.251533506008816	0.540765272776913	0.792977572125833
Merged-chr2-131258926-4	chr2	131258802	131259002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3106.0	NM_001355681	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	6.34772462750513	6.13008961993672	6.1098287980334	5.82526190834823	6.53225558695386	6.70938766283915	6.74084603314676	6.46525064543596	0.772202436067248	0.00103783001418058	0.0138518099717532
Merged-chr6-91679206-4	chr6	91679115	91679315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4852.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	6.41190486096218	6.96358060966859	6.60157630158526	6.97249541401005	6.47868205541974	6.47552571869458	6.65951582758855	6.70356782560922	-0.277500349459982	0.231212052096054	0.540724853688999
Merged-chr14-70022401-4	chr14	70022307	70022507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 4 of 6)	intron (NM_028560, intron 4 of 6)	-55038.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	5.91071718635033	6.04881174066171	6.26739291593514	5.95003407714761	5.84419260456925	5.7526260252956	5.83541305988815	5.93017182739222	-0.320419139087204	0.193714805567597	0.493910062279647
Merged-chr6-31399771-3	chr6	31399658	31399858	+	888.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040300)	promoter-TSS (NR_040300)	930.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	3.89459176052026	3.70015908880464	3.84552064200638	3.7389047926025	3.84052852083918	3.913643464156	4.05696553026656	3.89285761374229	0.388177013244171	0.372830613445883	0.676516435987063
Merged-chr7-130657959-4	chr7	130657841	130658041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004468, intron 3 of 21)	intron (NM_001004468, intron 3 of 21)	-34615.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	6.27435066412252	6.15919409294683	5.80000511702305	6.05337786479638	5.95763261710817	5.70084071506946	6.03923696853968	5.71832819068112	-0.338469533512668	0.187260964235949	0.485540149109376
Merged-chr11-114877299-6	chr11	114877243	114877443	+	866.022217	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-12698.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	3.98479600328187	4.07715815660164	3.57200327137894	4.09196375332797	4.22333190610787	3.88593484092226	4.52759090092668	4.21473251701011	0.709399255660177	0.126534060118076	0.395423798794597
Merged-chr13-96548089-4	chr13	96547986	96548186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023420, intron 1 of 17)	intron (NM_023420, intron 1 of 17)	5351.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	7.1170419641042	6.79638191879148	6.93051085117782	7.04145259509494	6.74302302196856	6.65616527855833	6.38952640717047	6.76365784084492	-0.463724572018574	0.0270381293411811	0.156441798762472
Merged-chr10-58382155-4	chr10	58382066	58382266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201242, intron 1 of 9)	intron (NM_201242, intron 1 of 9)	10712.0	NM_201242	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	5.35511445599719	6.0416252220674	6.09327722845938	6.14849513170463	5.92346313408528	5.16157159974585	5.48477807038428	5.59396035581574	-0.607255130186845	0.0619929267935574	0.263375584113562
Merged-chr1-155158639-4	chr1	155158560	155158760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021433)	promoter-TSS (NM_021433)	-43.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	8.17281513694996	8.31037097516097	8.2099495148889	8.19153587102961	8.19674271677731	8.18353423635392	8.09871697230856	8.00058683449153	-0.124895281049526	0.41840191760979	0.711912368071791
Merged-chr12-101722434-4	chr12	101722349	101722549	+	919.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3926.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	4.49177933151799	4.26584837738568	4.69232779625219	4.74792807172931	4.53004547169833	4.66688422353142	4.47222732842715	4.89324448836023	0.159597218934307	0.672041604710853	0.864997909291221
Merged-chr4-136181655-2	chr4	136181567	136181767	+	616.333374	f0_balb.idr|f1_balb.idr	intron (NM_177733, intron 4 of 6)	intron (NM_177733, intron 4 of 6)	885.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	3.06176426736252	2.99170861504964	3.06219913804318	2.84642139126254	2.8410604603157	2.80108133652524	2.69025826995327	2.69640383242177	-1.06374560432978	0.096850831286225	0.34090261569477
Merged-chr11-74770800-4	chr11	74770703	74770903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026197)	promoter-TSS (NM_026197)	-60.0	NM_026197	67493.0	Mm.45748	NM_026197	ENSMUSG00000010554	Mettl16	2610100D03Rik|2810013M15Rik|A830095F14Rik|AI846133|Mett10d	methyltransferase like 16	protein-coding	6.45967876965011	6.81534309961616	6.352354873524	6.11300468679709	6.76107550658396	6.85825237365871	6.09443283569631	6.80204967158699	0.304738604521948	0.262897616307191	0.574735947525663
Merged-chr12-69372537-4	chr12	69372468	69372668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007481, exon 2 of 2)	5' UTR (NM_007481, exon 2 of 2)	418.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	5.64934947878686	5.78733262005095	6.44272605346187	5.94809820719254	6.24049196929406	6.20937169334669	6.42533169862724	6.4380980241322	0.524097846654279	0.0494751815712371	0.230178128110654
Merged-chr4-63307529-4	chr4	63307420	63307620	+	913.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025685, intron 36 of 60)	intron (NM_025685, intron 36 of 60)	-37036.0	NM_008768	18405.0	Mm.4777	NM_008768	ENSMUSG00000039196	Orm1	Agp-1|Agp-2|Orm-1	orosomucoid 1	protein-coding	4.56105711455908	4.32873590309778	4.404517558809	4.74631736565932	4.23640725164753	4.14125835840657	4.29885001839624	4.26967910026025	-0.704568391400062	0.0718446103894842	0.287919452641609
Merged-chr10-88351880-4	chr10	88351783	88351983	+	821.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 1 of 6)	intron (NM_027878, intron 1 of 6)	5192.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	4.34392591808736	4.27733586473096	4.25512145100765	4.37319167658777	4.29080826948503	4.42787779799776	4.32519683940466	4.46505451651688	0.134230469943555	0.719688369982559	0.888022825078143
Merged-chr13-85189925-3	chr13	85189845	85190045	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023243, intron 1 of 8)	intron (NM_023243, intron 1 of 8)	560.0	NM_023243	66671.0	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	5.54527802208243	5.31191726925354	5.8502065484716	5.31932608632843	5.42777132466362	5.61050979214166	5.28832275736332	5.48830520841242	-0.0946841063818946	0.748888314957405	0.901109312321074
Merged-chr10-14045967-2	chr10	14045930	14046130	+	771.833374	f0_c57.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	79651.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	2.38489264009712	2.39590595112886	2.38510606224736	2.03590947798795	3.05950010130797	3.08999119499065	2.79184325676294	2.67656919913239	4.05429709031616	6.59804795956482e-06	0.00018991669556833
Merged-chr10-84401335-4	chr10	84401229	84401429	+	836.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	39142.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	3.84013240585686	4.12683930880922	4.09751569871223	4.21195417314246	4.27489650710301	3.96140106700795	3.93365033725128	4.30854634477489	0.131619018343306	0.759893912142634	0.905851390428209
Merged-chr3-41599916-4	chr3	41599826	41600026	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130184, intron 6 of 10)	B3|SINE|B2	35046.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	4.66739493824733	4.60760858949891	4.70774329430108	4.95641647807946	4.93312945419649	4.48121982661661	4.76079833920407	4.95155616202757	0.0937573217616169	0.79218476896379	0.919521862791064
Merged-chr1-94711573-2	chr1	94711473	94711673	+	820.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85869.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	3.11318453367719	3.25164794992775	2.98550847526432	3.13287710358827	3.01100914137736	3.16087704033206	3.42010566906548	3.17153783598267	0.26791294578202	0.635669487585171	0.845867874162473
Merged-chr2-145168205-4	chr2	145168109	145168309	+	913.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356497, intron 1 of 16)	CpG	434.0	NM_001356497	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	4.48870333423642	4.63367052124888	4.70154688605569	5.02706677798544	4.68579568469817	4.57408426904869	5.13031551764767	4.73697242190296	0.105340531159715	0.778912975971364	0.913802853320572
Merged-chr2-101783460-4	chr2	101783349	101783549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	14258.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	6.86422363393436	7.24726460867574	7.33896669777845	6.96660774420798	7.43917394233226	7.49551886784959	7.44511558102311	7.49487037361222	0.47997936337865	0.0128899413070281	0.0944960090171883
Merged-chr5-140704521-1	chr5	140704421	140704621	+	1000.0	f0_c57.idr	promoter-TSS (NM_001276287)	promoter-TSS (NM_001276287)	-490.0	NM_181066	231841.0	Mm.271932	NM_172724	ENSMUSG00000000148	Brat1	AA881470|Baat1	BRCA1-associated ATM activator 1	protein-coding	7.07571978969702	7.34916763729978	7.11156897211924	6.40512859366612	6.89419046156565	7.22988370484457	6.8663844871642	6.8273987253831	-0.080466028276254	0.754472375995648	0.903314708466436
Merged-chr19-5846766-4	chr19	5846635	5846835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1255.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	8.05213493087911	8.45685802833654	7.84446653470001	8.16358815511116	8.15650500163784	8.18374725890776	8.15283551250601	8.11903272798295	0.000433453888288344	0.998090588895837	0.99910121404386
Merged-chr2-160086564-4	chr2	160086418	160086618	+	987.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69865.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	5.09148369045655	5.60035820978121	5.49643892777415	4.83610187252446	4.65303535452414	4.86541208140711	4.57354238686441	4.49520158746962	-1.25830072781326	0.000828443849580126	0.0115713902608445
Merged-chr18-34391027-4	chr18	34390931	34391131	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-17616.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	4.78200836630674	5.47220480770657	5.00460903368052	4.85029891803698	4.68900857523555	5.03686981643806	4.79976186466599	5.16029333039393	-0.24737208918658	0.492889042152138	0.763860504939081
Merged-chr9-75361962-4	chr9	75361875	75362075	+	744.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14217.0	NM_013479	12049.0	Mm.25988	NM_013479	ENSMUSG00000032191	Bcl2l10	AA420380|AU023065|Boo|C85687|Diva	Bcl2-like 10	protein-coding	3.21314491314029	3.22075106447377	3.89817796203719	3.3081367569374	3.35725605199923	3.39072669590198	3.32411503351941	3.27489265622704	-0.344435606035847	0.542233577275049	0.793691778334718
Merged-chr9-75404919-4	chr9	75404845	75405045	+	842.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015806, intron 1 of 5)	MTD|LTR|ERVL-MaLR	4414.0	NM_027418	50772.0	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	3.98300702482158	3.78391989694705	3.82858633210781	3.97385184796738	4.02000509414559	4.10640421876279	4.26512805640806	3.98122941140867	0.521605548797698	0.218520675398388	0.525794761576629
Merged-chr12-99464490-4	chr12	99464389	99464589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14415.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	5.32322255862211	5.60238746481423	5.42016639952006	5.50100211252255	6.06531214457169	5.7415320598323	5.61733805007493	5.91898546836514	0.641918123349825	0.0175864528603394	0.117285311360077
Merged-chr4-9649576-4	chr4	9649489	9649689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	-5872.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	6.61424022169541	6.16554044659618	6.67408198024819	6.5882443059937	6.32320728126376	6.2595834813424	6.53594345564311	6.54915704152278	-0.152920960082445	0.510963799321132	0.775080817319045
Merged-chr5-125278561-4	chr5	125278444	125278644	+	989.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205082, intron 11 of 11)	intron (NM_001205082, intron 11 of 11)	62550.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	4.76112686789395	4.58503861979465	4.86884149771437	4.24231763975722	4.83434039265354	4.85972953255649	4.54029611356967	5.05520586955132	0.460422264965407	0.221732355834094	0.529830256279916
Merged-chr7-80069521-7	chr7	80069335	80069535	+	983.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045695, intron 2 of 2)	intron (NR_045695, intron 2 of 2)	5822.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	5.08732898348578	5.03668598669125	4.77783353998641	4.43526076918548	4.69610944321743	4.28578908267648	4.29770406984622	4.31362001919492	-0.932501813086199	0.0231751918504873	0.141050618274975
Merged-chr7-82648526-4	chr7	82648419	82648619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177894)	promoter-TSS (NM_177894)	9.0	NM_177894	330577.0	Mm.222812	NM_177894	ENSMUSG00000038570	Saxo2	1700129I04Rik|D030069K18|Fam154b	stabilizer of axonemal microtubules 2	protein-coding	8.23555375492317	8.30351566391609	7.99460441357967	8.30079826820617	8.26854851504889	8.32442245822085	8.19809440569964	8.0775111771316	0.00175135368964155	0.991457337186658	0.996745793587504
Merged-chr2-72373802-4	chr2	72373693	72373893	+	911.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 7 of 19)	intron (NM_023057, intron 7 of 19)	88092.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	4.48194145335555	4.94756376876133	4.52722290042867	4.05046239313962	5.24936771397668	4.90337939938565	4.50644665994401	4.60905295685927	0.677006021965224	0.111946758618687	0.369743500552577
Merged-chr2-165333371-4	chr2	165333269	165333469	+	918.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-6890.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	4.60713145278599	4.3018728945711	4.71995420443381	4.82251118792546	4.34686564780707	4.42893297529892	4.50662473203613	4.91176698898802	-0.158975413027459	0.685225437618676	0.871269407364411
Merged-chr3-52391287-4	chr3	52391165	52391365	+	899.354126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122928.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	4.26012516364615	4.34308678465063	4.03633952601349	3.79177885415102	4.28573866608097	4.30221280105866	3.75109616954318	3.82180304923808	-0.12511735648448	0.7915144769068	0.919148526825176
Merged-chr8-125720267-4	chr8	125720185	125720385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-13918.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	5.88219043784068	5.6252183334121	5.47523330829972	5.40968737582456	5.71446237536908	5.91947244820968	5.83130289674021	5.78878934602198	0.357287319036457	0.182151317747898	0.47878218634963
Merged-chr7-35067984-4	chr7	35067882	35068082	+	803.924988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-11416.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	4.60680045998728	4.19774060064899	4.16184998252085	4.38445905084357	4.0795707841721	4.23803757908462	4.0444882906825	4.4601822734991	-0.339548786716092	0.409143766238354	0.704831627974249
Merged-chr9-40834870-4	chr9	40834779	40834979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33606.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	5.76321266982693	5.6024665012612	5.92351604831434	5.57455691782519	5.87239637529295	5.86444782395652	5.58143554555892	5.83082270458691	0.141249175628912	0.589870952235922	0.820608949476005
Merged-chr2-148672562-4	chr2	148672461	148672661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019761)	promoter-TSS (NM_019761)	-54.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	8.49064166204672	8.53980650998843	8.72787249560398	8.68255515185052	8.34892245883703	8.58720164219072	8.89314000788438	8.30986417464552	-0.0763437801952075	0.677035059324172	0.867394047439347
Merged-chr12-81719359-4	chr12	81719263	81719463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001174107, exon 11 of 11)	3' UTR (NM_001174107, exon 11 of 11)	61807.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	6.82150054355747	6.60105641250437	6.64934461948136	6.90874230881873	6.74918039445875	6.64365230256795	6.58424327889258	6.71972856570151	-0.117058436211607	0.571642357489487	0.810781529929199
Merged-chr18-46273765-4	chr18	46273669	46273869	+	976.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172627, intron 2 of 8)	intron (NM_172627, intron 2 of 8)	7081.0	NM_172627	225467.0	Mm.262096	NM_172627	ENSMUSG00000024477	Pggt1b	2010207C17Rik|2610100E13|AI451237|AI551093|BGG1|GGT1	protein geranylgeranyltransferase type I, beta subunit	protein-coding	4.8370138942485	4.91606735214614	4.92308524757733	5.39267190404941	5.88800492221844	5.14619780364128	5.86360338268278	5.78948984224661	1.13586850824559	0.00104955506528674	0.013984702357178
Merged-chr13-112602780-4	chr13	112602696	112602896	+	959.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145885, intron 18 of 21)	intron (NM_001145885, intron 18 of 21)	-22134.0	NM_139299	218624.0	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	4.41255442389675	3.93805402300608	4.63664580596095	4.6065652067072	5.18959466460958	4.68657417080706	4.99850642251599	5.16319630913768	1.22887088928633	0.00198181739074643	0.0232280224034151
Merged-chr9-65525894-6	chr9	65525825	65526025	+	860.1555179999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54162.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	3.3825471096819	4.05654931069459	3.66692570293143	2.75754205204672	3.68316240228894	3.68174420472408	3.30652510772309	3.66465322913076	0.0784540841605496	0.905351453201521	0.964874095457733
Merged-chr9-44169323-4	chr9	44169213	44169413	+	913.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 3 of 15)	intron (NM_007619, intron 3 of 15)	34655.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	4.6497200494975	4.8392290477059	4.69140710667227	5.1788890160804	5.08713360832876	4.78455948862878	4.30375003450452	4.8752957687281	-0.144318582599521	0.712104937930706	0.884727078056288
Merged-chr2-148523149-4	chr2	148523047	148523247	+	966.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79612.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	5.03528974015914	5.02172692119616	5.26306797213213	5.30977712658994	5.3143889776937	4.7584936759292	5.40215269340132	5.28871857640946	0.0894558004493683	0.782026858622438	0.915221466378159
Merged-chr4-138464102-3	chr4	138463999	138464199	+	863.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8951.0	NM_025451	66259.0	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	3.67969035045652	4.04901283204124	3.95694161028456	3.5508515597492	3.57994948325023	3.50930949614499	3.24921704045522	3.39170280075682	-1.21085107090176	0.0242986058850197	0.145697472317669
Merged-chr17-25139005-4	chr17	25138892	25139092	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317404, intron 1 of 24)	B4|SINE|B4	2361.0	NM_001317404	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	4.87658924229785	5.13545662355549	4.79119325489717	4.61062882376494	5.89564798877642	5.61876266497078	5.38974915987287	5.70693635332643	1.48907232805883	1.63607940990894e-06	5.4699152803151e-05
Merged-chr15-77956763-4	chr15	77956654	77956854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168260)	promoter-TSS (NM_001168260)	-32.0	NM_001017983	239554.0	Mm.295605	NM_001017983	ENSMUSG00000016552	Foxred2	A430097D04Rik|D15Bwg0759e|Gm304	FAD-dependent oxidoreductase domain containing 2	protein-coding	5.81360590744029	6.4269624186229	5.91461132326952	6.27166537448994	6.33442937404192	6.01847376629019	6.30699607129863	5.98052022929053	0.0503363860840162	0.849221409147884	0.943021430626644
Merged-chr1-135726129-4	chr1	135726037	135726237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360782, intron 1 of 5)	intron (NM_001360782, intron 1 of 5)	-3030.0	NR_153810	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	7.1176804674588	7.0233348485397	6.59524391654859	6.7887158762432	7.1106388539261	6.73921698783809	7.20080723298358	7.07966931277459	0.214714082382759	0.324851926908487	0.63639112966971
Merged-chr5-114699770-2	chr5	114699670	114699870	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR2a2_Mm|LTR|ERVK	-8009.0	NM_029992	77832.0	Mm.239698	NM_029992	ENSMUSG00000002486	Tchp	A930031F18Rik|AV279199	trichoplein, keratin filament binding	protein-coding	4.77482548556553	4.31271548245635	4.0238806555924	3.2656647239168	4.70602501723359	4.69285015330216	4.45226988528532	5.0959499619515	1.1828341822577	0.026288795067638	0.153654963386386
Merged-chr11-102185293-4	chr11	102185167	102185367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172947)	promoter-TSS (NM_172947)	-11.0	NM_172947	268490.0	Mm.259079	NM_172947	ENSMUSG00000020922	Lsm12	1110032E16Rik|1110059P07|2600001B17Rik	LSM12 homolog	protein-coding	6.28901215236547	6.73969090737347	6.22856362169131	6.15321288115996	6.68630840944697	7.01032124511218	6.71999403843472	6.8038874912758	0.633774164790153	0.00735260985167337	0.0631000020053362
Merged-chr11-52098668-4	chr11	52098572	52098772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019411)	promoter-TSS (NM_019411)	-152.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	8.53343352488189	8.70562691817576	8.64687153288484	8.3121417411183	8.79297839900869	8.76058695202073	8.82743480488343	8.68952516541334	0.27243641048016	0.0874581444050038	0.322502726855605
Merged-chr19-21913912-4	chr19	21913808	21914008	+	991.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135568.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	5.55580148982616	5.46628590588968	5.6367288626707	5.98393807406509	5.87579448592691	5.28172921068388	5.84157595252316	5.37629528952109	-0.0994929374723693	0.747764033992607	0.90068822490119
Merged-chr18-69365359-4	chr18	69365250	69365450	+	660.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	(T)n|Simple_repeat|Simple_repeat	19190.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	3.75334600511909	3.56622735231078	3.75387021636008	4.19465880735883	3.54049574456417	3.92666099464785	4.10134656108089	3.58209930131129	-0.133095245723129	0.797695808675229	0.921862017583033
Merged-chr19-3699660-4	chr19	3699544	3699744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8649.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	5.57783884945816	5.49415284892567	5.29501547279175	5.22818364347274	5.26545046467521	5.40694614849916	5.44531626693327	5.78466490245382	0.153929888185856	0.602967807279254	0.82789000124091
Merged-chr3-88631159-4	chr3	88631071	88631271	+	749.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 2 of 21)	intron (NM_001198913, intron 2 of 21)	9777.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	4.72926834613258	4.03860720454942	4.8844236084125	4.44560152976555	3.7721003683278	4.38739551734979	4.08893634145831	4.47288002087149	-0.834931826763368	0.0742120012843369	0.293479417713085
Merged-chr7-97400064-4	chr7	97399959	97400159	+	937.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024220)	promoter-TSS (NM_024220)	56.0	NM_024220	68197.0	Mm.334031	NM_024220	ENSMUSG00000030647	Ndufc2	1810004I06Rik|2010300P09Rik|G1|R75094	NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2	protein-coding	4.60723779101058	4.57590019909849	4.34504402881434	4.20077718303878	4.60262950512553	5.05987381231083	4.46271022037461	4.78902248347379	0.682864711617113	0.0728638147446667	0.290406712005747
Merged-chr12-108204076-4	chr12	108203974	108204174	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009832)	TTS (NM_009832)	24336.0	NM_009832	12454.0	Mm.474441	NM_009832	ENSMUSG00000021258	Ccnk	AW123198|AW413594|CPR4|CycK	cyclin K	protein-coding	5.35897456618682	5.76370300671253	6.31713470534434	6.06443536987933	5.89492848615553	5.40062253742285	5.73530589248705	5.96586836113729	-0.25198624368295	0.422311791080809	0.714626353223175
Merged-chr15-64061338-4	chr15	64061206	64061406	+	980.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144846)	promoter-TSS (NM_144846)	-858.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	5.48530404837224	6.08725701848878	5.39452650520281	5.56558902871084	5.99389378378245	5.90207532847617	5.76910855323495	5.10942699015998	0.127407873017971	0.701175970856427	0.879597990737905
Merged-chr2-60903699-4	chr2	60903591	60903791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-22253.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	5.87056334839069	5.98303600431593	6.28157478050811	6.06314157087841	6.13969856274041	6.40068719253787	6.52753338757536	6.48057766405602	0.501060509567032	0.0364639315064328	0.189935322407346
Merged-chr6-54927038-3	chr6	54926930	54927130	+	737.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 11 of 11)	MTB_Mm|LTR|ERVL-MaLR	44631.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	3.41101283405425	3.62682109628315	3.47172471474469	3.10188390214567	3.86406817099358	3.90636857541239	3.51543563084968	3.58259976946978	1.04237506260264	0.0454227205844216	0.218314618945443
Merged-chr11-98810659-4	chr11	98810549	98810749	+	890.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033551)	promoter-TSS (NR_033551)	-560.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	4.07018327749349	4.3796509986894	3.96122653538757	4.0145630298141	4.57389202419572	4.24878845829247	4.63051541122295	4.43264163297246	0.889874698806845	0.0255089380674028	0.150568098739503
Merged-chr8-84437009-3	chr8	84436855	84437055	+	893.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 1 of 47)	intron (NM_001252060, intron 1 of 47)	21591.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	4.14877727376875	4.12930519480676	4.40890205084351	4.75851176231303	2.93801603836275	3.20465335238925	3.15637784118901	3.24484470516399	-6.48150609233178	1.32724822002561e-09	8.35297975713554e-08
Merged-chr1-162665298-4	chr1	162665196	162665396	+	944.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7077.0	NM_001177581	100038657.0	Mm.416999	NM_001177581	ENSMUSG00000091060	Myocos	7420461P10Rik	myocilin opposite strand	protein-coding	4.96309504713155	4.60795022509067	4.7000578338407	4.68775421959317	5.22891849167275	4.6065941469288	5.41189020452424	4.96054311260515	0.698003962725547	0.0498114330360879	0.231129595311323
Merged-chr18-53176292-4	chr18	53176185	53176385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026386)	promoter-TSS (NM_026386)	-7.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	7.79698271974221	7.69144505315294	7.63369364071413	7.55989142548015	7.90251641202395	8.12798451170108	7.98504203297981	7.80832546884313	0.379414170066645	0.0256445947865154	0.151050055350836
Merged-chr3-65974848-4	chr3	65974732	65974932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16583.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	8.73884425098493	8.69750274584491	8.70602891917734	8.59773815809911	8.79123804312548	9.05405113990803	8.97170515835844	8.64288939615681	0.23666894526582	0.133530772332517	0.406860242524004
Merged-chr16-43409328-4	chr16	43409235	43409435	+	893.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	10861.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	4.66460483631022	4.46418352242394	4.81341097470644	5.2580417777201	4.48724173135954	4.58400489986099	4.56336531994314	4.62249857914115	-0.627256714984321	0.106614881804469	0.360048425865175
Merged-chr7-44848697-1	chr7	44848597	44848797	+	1000.0	f0_c57.idr	promoter-TSS (NM_001290695)	promoter-TSS (NM_001290695)	382.0	NM_001042655	233204.0	Mm.27567	NM_144924	ENSMUSG00000038520	Tbc1d17	BC017607	TBC1 domain family, member 17	protein-coding	6.67099896874412	6.7571968082968	6.68705493829615	6.39020544072252	6.48084618387109	6.72283362326836	6.71053473022087	6.68229222018952	0.0367697492929944	0.865239485612116	0.949535988663619
Merged-chr12-99153627-2	chr12	99153527	99153727	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9181.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	2.92941491568877	2.92477287602275	2.870503504536	2.80720345194574	2.91655808369742	2.84806915801851	2.7991015132144	2.67344072059442	-0.291748231118372	0.636774430572489	0.846451769792625
Merged-chr8-14651598-4	chr8	14651496	14651696	+	866.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-236940.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.80741286338604	3.56069069429888	3.97956639512998	3.90849505636401	4.63044453426366	4.44075338210581	4.29028694410259	4.57016851089942	1.66029324605425	0.000102258088368682	0.00206779217954387
Merged-chr6-118179762-4	chr6	118179673	118179873	+	977.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080780, intron 4 of 18)	intron (NM_001080780, intron 4 of 18)	17971.0	NM_009050	19713.0	Mm.57199	NM_009050	ENSMUSG00000030110	Ret	PTC|RET51|RET9|c-Ret	ret proto-oncogene	protein-coding	5.32158830466207	5.50158406001232	5.49226708893256	5.65991367899009	5.23556106886476	4.99245583696246	5.20265879407167	5.48840032835174	-0.478036919680334	0.106737866144715	0.360292814260666
Merged-chr12-86859478-4	chr12	86859383	86859583	+	866.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25331.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	4.522473399649	4.31321880912067	4.00206045418023	3.57867661005454	3.9619348546409	4.02309820847709	3.98476647881289	3.78517799631321	-0.537995876285995	0.278813113432838	0.591009603347969
Merged-chr8-105348042-4	chr8	105347947	105348147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081332)	promoter-TSS (NM_001081332)	-77.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	8.12670374636609	8.55635690673125	8.27197080550073	8.24703694741886	8.46531083199791	8.18579183258971	8.38704900951921	7.69495980866211	-0.114535197584115	0.583807683697775	0.817445600824705
Merged-chr2-30268676-3	chr2	30268567	30268767	+	736.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252571, intron 1 of 9)	intron (NM_001252571, intron 1 of 9)	1848.0	NM_001252570	227696.0	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	3.61761197240711	3.29196350828212	3.41995851696657	3.18955762696076	3.23656150368306	3.16130422622057	3.23648989455475	3.52084021084043	-0.304947258943719	0.579668787999616	0.815458207278168
Merged-chr7-92878813-4	chr7	92878777	92878977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	intron (NM_028243, intron 1 of 8)	3624.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	6.91615680270822	7.01518414625669	7.41078863315721	7.40212363171179	7.13800137221485	7.037699405129	7.02426869091908	7.34904574805486	-0.0943996501126655	0.657925553990918	0.857591206393311
Merged-chr5-150168942-4	chr5	150168837	150169037	+	900.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90993.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	4.70278351470914	4.72759148269246	4.44475157816192	4.94280553376436	4.6482599061714	4.71351213080982	4.75675280247418	5.07006768034482	0.143804058758524	0.689913410057262	0.873650535087508
Merged-chr15-66092317-4	chr15	66092216	66092416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	-115512.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	7.1245678691631	6.62104349126981	7.03387103830702	7.31628827134552	7.09657024233144	6.63216112288063	6.76380751737925	6.64083861622893	-0.34621865900976	0.149328104807412	0.431547916040876
Merged-chr17-5520153-4	chr17	5520058	5520258	+	982.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	27558.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	4.50692564005987	4.41699698381966	4.03964440587921	4.58875662108224	4.63811909404879	4.27352637334373	4.52495418586722	4.29199170554751	0.0768349651501174	0.848617563286084	0.942786711901439
Merged-chr2-167996584-4	chr2	167996514	167996714	+	917.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 4 of 21)	MLTR14|LTR|ERV1	13979.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	4.6740783871512	4.70590013405421	4.90554462989627	4.75353283443659	4.05627591347426	4.32644975352214	4.32706224610141	4.24664290457095	-1.23156775761091	0.00109249216310891	0.0144325352037731
Merged-chr2-121171117-4	chr2	121170964	121171164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290819)	promoter-TSS (NM_001290819)	61.0	NM_001290819	99334.0	Mm.188422	NM_178889	ENSMUSG00000050619	Zscan29	AW125441|Zfp690	zinc finger SCAN domains 29	protein-coding	5.75247143770709	5.6870565600514	6.01309047448823	5.85968865639897	6.05990768484155	5.79483242663347	6.24872844418539	6.39144858953321	0.486134961217505	0.0597508240402441	0.257804685964753
Merged-chr9-120049572-4	chr9	120049470	120049670	+	953.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009987, exon 2 of 2)	3' UTR (NM_009987, exon 2 of 2)	18726.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	5.2307379432535	5.16571201840151	5.17187952019631	4.57108008304238	5.05530566160123	5.2500552620581	4.94953306017705	5.00539728877626	0.0498973730313481	0.885998094592928	0.957204455938164
Merged-chr7-27166712-6	chr7	27166549	27166749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357767)	promoter-TSS (NM_001357767)	153.0	NM_053208	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	6.53468201566681	7.08853487462086	7.2253368208207	6.56171001368703	6.85184694154594	7.21507093283372	6.35360591748812	7.19971754427002	0.088020914637668	0.751331096707316	0.902096657263128
Merged-chr11-114989398-2	chr11	114989295	114989495	+	842.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145437, intron 1 of 3)	ID_B1|SINE|B4	491.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	3.33829175767012	3.0087408080421	2.98178729736967	2.83202594150866	3.29219672382576	3.28550116854839	3.16036175320352	3.33678441158397	0.89221649829502	0.119987043250658	0.38344891804151
Merged-chr15-89179081-4	chr15	89178974	89179174	+	984.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	1714.0	NM_001284506	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	5.31349341724521	5.14227803314283	4.47917626211388	4.81157205875992	5.5026294639239	5.10257451675188	5.230951047171	5.22409150374562	0.586804491680108	0.0930248594542026	0.3336668813899
Merged-chr9-86016126-3	chr9	86016039	86016239	+	894.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	173287.0	NM_001164792	21983.0	Mm.20864	NM_011627	ENSMUSG00000035274	Tpbg	5T4|AW495680|WAIF1	trophoblast glycoprotein	protein-coding	4.26532397617176	4.00308748352913	4.10406408291125	4.65062371330662	3.58891056134188	3.33349886509138	3.62815312648498	3.57711621724894	-2.24983583470173	2.03076873865415e-05	0.000516058864864919
Merged-chr10-25331558-2	chr10	25331445	25331645	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28253.0	NM_001358754	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	5.74552985300746	4.80601364240678	5.30448790706205	5.61340946793989	5.33569862065976	5.54009322545081	5.50390578380808	5.2693282306113	-0.0115372005486119	0.972544763383039	0.990115073860739
Merged-chr18-60526332-7	chr18	60526239	60526439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357462, exon 1 of 14)	exon (NM_001357462, exon 1 of 14)	185.0	NM_001357462	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	6.88540876608462	6.99827063081163	7.00311718536172	6.84909133160754	6.89306940241609	7.11601302230373	6.89163089398345	7.08173991444649	0.0889889975872716	0.643786199482113	0.849901404168518
Merged-chr11-69235833-4	chr11	69235739	69235939	+	730.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008192, intron 2 of 18)	CpG	1183.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	3.8318750488801	3.63460781406369	3.78396311528965	3.37326731918773	3.71204777275104	3.95394037537253	3.5559476160995	3.73137711729539	0.274227886177973	0.576363079351706	0.813518959828176
Merged-chr11-94149280-3	chr11	94149134	94149334	+	870.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-62220.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	3.94293353969178	3.96978441296058	3.89714550288002	3.78138041349633	3.50084737633194	3.69478295634297	3.56413428562366	3.98576002119438	-0.597132885194285	0.209481270729266	0.514001426082884
Merged-chr1-91051669-4	chr1	91051585	91051785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-1759.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	4.72880174681349	5.00609745775929	5.22432341005303	4.73048837865446	4.68531058887649	4.94427855919038	4.74690507053386	4.91354179253513	-0.217342517409455	0.529047946817421	0.785408513162467
Merged-chr6-82753797-4	chr6	82753713	82753913	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 2 of 17)	intron (NM_013820, intron 2 of 17)	20641.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	3.8809816942635	4.32656538665987	4.37370023323829	4.03473288734443	4.36865836497272	4.12037929795079	4.64142004192276	4.28633342948258	0.501458640731572	0.230867739887716	0.540396396919272
Merged-chr11-96303323-4	chr11	96303206	96303406	+	928.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008268)	promoter-TSS (NM_008268)	-206.0	NM_008268	15413.0	Mm.207	NM_008268	ENSMUSG00000038700	Hoxb5	AI385717|Hox-2.1	homeobox B5	protein-coding	4.08153507426316	4.34007692061447	4.4707100210835	4.20869132221495	4.40918360620772	4.39687298259306	3.84911100767922	4.02842182936288	-0.197638221058989	0.646762195652724	0.851401409677112
Merged-chr10-95357928-4	chr10	95357841	95358041	+	958.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045337, intron 1 of 2)	ORR1F|LTR|ERVL-MaLR	21665.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	4.62679986829162	4.68487051991412	4.10105174712386	4.50839386209077	4.99480455189515	4.87549677964864	4.71786639566511	4.41091601095621	0.584007867958051	0.132243677541893	0.404866393014003
Merged-chr5-43880402-3	chr5	43880306	43880506	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	L1MC5a|LINE|L1	11597.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	5.0248555844013	5.20746798791682	4.68692457552706	4.76852124613918	4.63457517037239	5.13145733828581	5.26602088012184	4.88272298189051	0.115591509614835	0.746686171794825	0.90024329344347
Merged-chr10-40077798-4	chr10	40077703	40077903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 2 of 5)	intron (NM_001114332, intron 2 of 5)	-52535.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	6.39974456907601	6.32549902692126	5.92565481089131	6.55459283069692	6.04439037306041	6.0044066526014	6.1538869464261	5.89720318947619	-0.470995914627084	0.0615292387650531	0.262502378689626
Merged-chr11-69079047-4	chr11	69078949	69079149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	5623.0	NR_028566	100216530.0	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA	7.32294514389102	7.47927665670026	6.94952765069678	7.21552406444494	7.10305041663092	7.20634776016969	7.54221491624521	7.03661481536161	-0.0298811388469328	0.888898080413717	0.958394250474403
Merged-chr13-23533783-4	chr13	23533670	23533870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175661)	promoter-TSS (NM_175661)	-141.0	NM_175661	319173.0	Mm.377878	NM_175661	ENSMUSG00000061991	Hist1h2af	H2a-221	histone cluster 1, H2af	protein-coding	6.21043223291228	5.74296748437271	6.24894337047989	6.27308511915223	6.10157734816378	6.15968584277037	6.33904071659519	5.95593032109958	0.00617653774505368	0.98059668332555	0.99281244474172
Merged-chr17-25833483-4	chr17	25833340	25833540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019719)	promoter-TSS (NM_019719)	-79.0	NM_019719	56424.0	Mm.277599	NM_019719	ENSMUSG00000039615	Stub1	0610033N24Rik|2210017D18Rik|2310040B03Rik|AW046544|Chip	STIP1 homology and U-Box containing protein 1	protein-coding	7.29818451580106	7.86597292847346	7.44598637924141	7.46904415738362	7.72848534271086	7.64308630716547	7.84522028581956	7.66615185727158	0.242675464929867	0.207880097072863	0.512001235043907
Merged-chr10-111165665-4	chr10	111165555	111165755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003717, intron 1 of 22)	CpG	853.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	6.94114267522662	7.29177475744821	6.79885597985269	6.7376740486136	6.51912736040802	6.59211847802114	6.36210743366092	6.51689997280303	-0.651851088706601	0.00404035673846657	0.0403689714047321
Merged-chr7-27454918-4	chr7	27454778	27454978	+	947.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290525, intron 1 of 4)	L1MB8|LINE|L1	2460.0	NM_001290525	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	4.36960024823892	3.7775512464025	3.62995500977254	4.0685281104365	3.9853881440697	4.10176911675275	4.14836927517544	4.40425052240385	0.444466433772132	0.340969604638444	0.650091754977093
Merged-chr9-104574764-4	chr9	104574658	104574858	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	5275.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	5.75764307599502	5.25321461122325	6.21340663829373	6.08888360699293	4.5329575748707	4.83499680973534	4.93698352187396	5.1816857423642	-1.80276767001011	5.77340773188076e-07	2.11065941935049e-05
Merged-chr6-57756880-4	chr6	57756778	57756978	+	903.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 4 of 4)	intron (NM_146168, intron 4 of 4)	54423.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	4.3102588343343	3.82095758879221	4.51226443740441	4.63645634328922	4.36789673969761	3.90318902887578	4.33397243147978	4.43264190256457	-0.204102401472968	0.656882058536896	0.856918486940591
Merged-chr1-191718902-3	chr1	191718757	191718957	+	694.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134829, intron 1 of 7)	CpG	462.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	3.30568336179701	2.85917462903323	3.07093597702395	3.27633795975123	3.0982091712721	3.1817647188871	3.12265766078248	3.54727763564231	0.389475798896333	0.513771435847311	0.776645302351569
Merged-chr18-77663942-4	chr18	77663821	77664021	+	899.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178670, intron 2 of 4)	Tigger7|DNA|TcMar-Tigger	50089.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	4.35331162608631	4.4731184255687	4.56657812705287	4.41006147240371	4.35577653444286	4.73640570124286	4.65657254079248	4.52379656752324	0.265545004700439	0.467012216969125	0.746713897873741
Merged-chr15-62079612-4	chr15	62079534	62079734	+	937.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	40377.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	4.59394578135805	4.28249153959987	4.8839650365604	4.87024500474421	4.31648375012	4.68600622754026	4.57340144852555	4.81436138723092	-0.183566323532737	0.637627124003267	0.846859692033839
Merged-chr4-136518700-2	chr4	136518600	136518800	+	812.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024452, intron 1 of 4)	L2a|LINE|L2	48939.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	2.93621217179099	2.73072784278151	2.93661285382633	2.87450068830346	2.83944728919182	2.65745046644878	2.62098331625259	2.69454350872381	-0.767774716445907	0.237812164126891	0.548019685003496
Merged-chr12-110813270-4	chr12	110813163	110813363	+	864.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011973, intron 7 of 11)	intron (NM_011973, intron 7 of 11)	27676.0	NM_011973	26448.0	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	4.13497604394852	4.00729109122803	4.38139033053116	4.42792182560083	4.24871169392866	3.55481404161044	4.071823545546	3.82896691206619	-0.754976258066656	0.118279565237194	0.380417566943123
Merged-chr6-29998969-4	chr6	29998874	29999074	+	922.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	13645.0	NR_040263	76419.0	Mm.84522	NR_040263	ENSMUSG00000045709	Smkr-ps	1700023L04Rik	smal lysine rich protein 1, pseudogene	ncRNA	5.36347663423536	4.96307438153281	4.95220969875171	5.1777799230633	4.67383225874469	4.63169961125447	5.1201056059998	4.63507331419547	-0.688527161284554	0.046823129679568	0.222470031871168
Merged-chr15-26016525-4	chr15	26016431	26016631	+	826.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32165.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	3.93742251990777	4.2895005898608	3.93794467427896	4.54282138099579	4.21449087465629	4.36777145145883	4.1768838962373	4.51949934299573	0.240748806774881	0.586211571722697	0.818557203798918
Merged-chr10-81129547-4	chr10	81129438	81129638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6733.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	5.92417414113817	5.89386655415761	5.70530839466301	6.20230688344383	6.08566334535246	5.77222236087851	5.91714092897666	5.85191536137504	-0.0678180307294783	0.795945301556335	0.921007780621414
Merged-chr13-42096251-4	chr13	42096146	42096346	+	967.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	44225.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	4.58078198803243	4.76999411599944	5.28240394514469	4.76584474091428	4.95479755831833	4.80225724915156	4.72602984262097	4.78365069731781	-0.0907964303589227	0.798950530161132	0.922381350542369
Merged-chr18-82530302-4	chr18	82530202	82530402	+	985.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 3 of 3)	intron (NM_001025245, intron 3 of 3)	-24161.0	NM_001025258	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	4.94691453433164	4.75925563340447	4.80090875587792	5.02235025155803	4.81130897526151	5.05000605743834	5.11481805041759	4.94440735042677	0.159265192881095	0.623392821893723	0.838941930944268
Merged-chr16-85072804-4	chr16	85072689	85072889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 5 of 15)	intron (NM_001198825, intron 5 of 15)	100578.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	6.45780435156508	6.57016162496266	6.54560426596669	7.09793021404542	6.67040757045769	6.72249962071402	6.76769980105825	6.66819503511531	-0.0158474637491954	0.946926901974254	0.98101762641852
Merged-chr4-32153614-2	chr4	32153520	32153720	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	189513.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	3.21522344254476	3.29285913836155	2.95920659441797	3.17551223738333	3.08516892895548	3.32768505321429	3.36521421816049	3.27082816226263	0.351298728587572	0.525815586365423	0.783367294725902
Merged-chr2-125123638-4	chr2	125123546	125123746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162417)	promoter-TSS (NM_001162417)	14.0	NM_001162417	17876.0	Mm.18535	NM_010852	ENSMUSG00000027201	Myef2	9430071B01|mKIAA1341	myelin basic protein expression factor 2, repressor	protein-coding	5.91339987691267	5.88353250814492	5.89169578124935	5.32278574683707	6.36361852061775	5.89709578307997	5.90639830742243	5.95448262787021	0.479826512886886	0.0956459634228471	0.338592748975116
Merged-chr1-155293625-4	chr1	155293531	155293731	+	884.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 11 of 14)	intron (NM_011273, intron 11 of 14)	123813.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	3.90545648005753	3.5623141562496	4.13726694694687	3.99536992226437	4.26646806749776	3.86416114114229	4.07585413002499	3.79838424460139	0.284752239501829	0.543983505412285	0.795027379566929
Merged-chr11-105181977-3	chr11	105181849	105182049	+	949.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027956)	promoter-TSS (NR_027956)	422.0	NM_001294329	24086.0	Mm.126976	NM_011903	ENSMUSG00000020694	Tlk2	4933403M19Rik|PKU-alpha|PKUalpha|Tlk	tousled-like kinase 2 (Arabidopsis)	protein-coding	4.05433816679505	4.43851083451664	4.49139003752251	4.03157696399433	4.77897588252001	5.01630911199302	4.51057541543772	4.26406690347973	0.930861581890699	0.0246334727307992	0.146923575959909
Merged-chr8-25068287-4	chr8	25068160	25068360	+	838.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 3 of 11)	intron (NM_031257, intron 3 of 11)	-29298.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	3.90181552782495	3.57004696555073	3.85626365561565	3.73295455584558	3.83583775485264	3.65407248619691	3.4644564237736	3.85392269355447	-0.150253125809588	0.753641984049907	0.902798885097597
Merged-chr14-25485755-4	chr14	25485654	25485854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	26569.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	5.27854842706653	5.43713377905169	5.21444511858792	5.49185982690878	5.51290320957911	5.51557692505982	5.42936840582193	5.33761709658968	0.138070946787332	0.622563149628602	0.838522951679646
Merged-chr14-70176745-2	chr14	70176645	70176845	+	751.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253736)	promoter-TSS (NM_001253736)	70.0	NM_001253736	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	3.60355405414174	3.22425291766804	3.02712551125678	3.09249102125216	3.11224797543069	3.62575911511157	3.33370904710789	3.45409567262837	0.495031382243616	0.391045282493141	0.690939565734194
Merged-chr16-45757627-4	chr16	45757529	45757729	+	978.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357078, intron 13 of 16)	intron (NM_001357078, intron 13 of 16)	-14674.0	NM_172511	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	4.78815822819457	5.22796119148048	5.16741174652366	4.99574608306205	5.54919934084152	5.43599277412288	5.4823997170124	5.22782794171429	0.694595408409124	0.0206605703545233	0.13089441364171
Merged-chr11-75533643-2	chr11	75533543	75533743	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	1531.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	2.98856746182146	3.00599817627891	2.87580705658274	2.81600315965147	2.49280968087284	2.56646844455381	2.53455365285813	2.93199628824346	-1.40438526685367	0.0467318981134855	0.222259105694226
Merged-chr14-54392725-4	chr14	54392629	54392829	+	954.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	RSINE1|SINE|B4	16743.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	5.85520907540978	5.78776326215642	6.91405997816051	6.86691883133726	5.10987580868792	4.82392103205801	4.85537297311283	5.21199139104207	-2.43185457104441	1.09155636989218e-10	8.28314401413174e-09
Merged-chr2-129340420-1	chr2	129340320	129340520	+	736.0	f0_balb.idr	Intergenic	Intergenic	-29482.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	3.37115455696178	3.75787865219107	3.73345738785362	2.89627007483588	3.66067445910453	3.42693869982051	3.10027096182011	3.42797428938786	-0.222708499164957	0.722585714820112	0.889246248924026
Merged-chr12-8521610-4	chr12	8521518	8521718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17948.0	NM_001038660	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	8.70661789396116	8.7853268027064	8.91483994046586	8.94517844118734	8.65446159681802	8.9490371894573	8.71508604339722	8.60371514619515	-0.136825569772369	0.384639393267778	0.686137220525467
Merged-chr11-97029928-4	chr11	97029846	97030046	+	987.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146027)	promoter-TSS (NM_146027)	-6.0	NM_146027	217140.0	Mm.46189	NM_146027	ENSMUSG00000020877	Scrn2	AV001119|D11Moh48|SES2	secernin 2	protein-coding	4.8833368084095	5.03263482397657	4.8106297837626	4.64475846764625	4.89341581502815	4.98448140259222	4.96269882017045	4.80745917011848	0.151063427826631	0.646321891036008	0.851295585787822
Merged-chr14-50862711-4	chr14	50862619	50862819	+	857.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 6 of 54)	intron (NM_009351, intron 6 of 54)	7835.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	4.11644774840123	4.28443560609437	4.58642992007636	4.4724206016456	4.34142779550413	4.29207161905367	4.2891181366008	4.47226829984819	-0.0770999295190129	0.842897625479484	0.940323698985438
Merged-chr7-141048434-4	chr7	141048332	141048532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12842.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	5.33001611481317	6.20428072768907	5.43143021172509	6.0601771400738	5.84735164838071	6.25039769262082	5.8806826389234	5.60796701522752	0.141736693079631	0.663958687934054	0.860803735967096
Merged-chr8-105226093-3	chr8	105226008	105226208	+	802.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145604, intron 1 of 15)	intron (NM_145604, intron 1 of 15)	920.0	NM_145604	234678.0	Mm.27186	NM_145604	ENSMUSG00000031889	D230025D16Rik	BC006874|Lin10	RIKEN cDNA D230025D16 gene	protein-coding	3.38601598244592	3.35912055077648	3.59056472225175	3.43521879164066	3.22496782997339	3.38290461439084	3.25920229956701	3.26910569534972	-0.585243572528274	0.26245717470772	0.57424810151607
Merged-chr18-64957673-4	chr18	64957532	64957732	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-65895.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	5.11203998605443	5.13938733270544	4.80957169054204	5.21925028088315	6.17358864650696	5.92420686357371	6.17161799091761	6.19952843102186	1.70980164790782	1.19990025697047e-09	7.62568753490191e-08
Merged-chr13-37845801-4	chr13	37845703	37845903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	18410.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.24179748436997	6.02755470497905	6.18868594879157	6.10997128857477	5.97984965037488	5.60773860269309	5.8218311186089	5.77285797428557	-0.516162431188108	0.0368598701530036	0.191226928107821
Merged-chr19-47461630-3	chr19	47461536	47461736	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	2775.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	6.28301490680482	6.27505340128685	6.48543593820785	6.53642163830246	4.41721402542177	4.59444277664441	4.54216360776607	4.56052012750189	-3.55828412525113	4.4748748135266e-26	3.15363479556445e-23
Merged-chr7-110769417-3	chr7	110769309	110769509	+	928.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276301, intron 1 of 14)	intron (NM_001276301, intron 1 of 14)	1203.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	3.86890524220083	3.96629781344469	4.18451534541275	3.88340094158948	3.62962168943367	4.13796797916562	3.85334614504242	3.6456903680458	-0.428895537610644	0.357062602075502	0.66331987984392
Merged-chr2-79865493-4	chr2	79865399	79865599	+	887.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009978, intron 11 of 12)	intron (NM_001009978, intron 11 of 12)	42900.0	NM_001009979	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	4.99202365023942	4.38302588674993	4.45087465870969	4.88011263988413	4.63211062054201	4.90381519483187	4.47472775658759	4.08947724420069	-0.323859664208683	0.441731440560773	0.72861833833751
Merged-chr3-135607316-4	chr3	135607201	135607401	+	830.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 13 of 24)	intron (NM_008689, intron 13 of 24)	84246.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	3.79320193842059	4.21114684704229	4.47838038352666	3.83727745240666	4.1402231650847	4.13888932862072	4.18435433179795	4.15605381110492	0.139549260798377	0.753726580478149	0.902814735650825
Merged-chr2-35200329-3	chr2	35200220	35200420	+	904.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026697, intron 1 of 7)	CpG	800.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	4.05816314559218	3.80723676057463	4.19360459002702	3.72262681214776	4.15913357526111	4.27654165468964	3.78277469546808	4.27329898791588	0.507966679138099	0.258258364544054	0.570072943307115
Merged-chr1-155972514-4	chr1	155972482	155972682	+	969.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039184, intron 1 of 37)	intron (NM_001039184, intron 1 of 37)	673.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	4.51692636992755	4.68813839811562	4.7501735151916	4.05166788563175	4.79223250211284	5.05379806993507	4.49673161591907	4.1784047245383	0.3260743487585	0.45164653053441	0.73618549960861
Merged-chr13-49191864-4	chr13	49191730	49191930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	4283.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	6.39102044185223	5.98678993094178	6.78198149216524	6.59587248356808	5.92648974796029	6.00348531996484	6.05531795660027	6.10355632099856	-0.688499945935647	0.00833576519544807	0.0691125720264179
Merged-chr16-14352801-4	chr16	14352706	14352906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8752.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	7.13487427415795	7.28930174933873	7.00109199366491	6.88829939200805	7.42467186511334	7.45551274592865	7.18973092976757	7.04692030366603	0.290055696318589	0.156617336483918	0.442624272785975
Merged-chr8-70611397-4	chr8	70611312	70611512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3098.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	4.42300728149832	4.28438648230799	4.55638711067293	4.53169775880081	4.56943716041854	4.92240247219057	4.83123303792889	4.94756004792737	0.771107812235809	0.0310579879812897	0.17129865379832
Merged-chr10-94336340-2	chr10	94336271	94336471	+	718.666626	f0_balb.idr|f1_balb.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	24422.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	3.77928942843703	3.92333038328217	3.77986097001178	3.65301530908949	3.39561066819514	3.44651262715243	3.61485431234577	3.3956738080336	-1.0393867987736	0.0366678170770428	0.190606773660033
Merged-chr19-45081497-3	chr19	45081387	45081587	+	859.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5400.0	NM_001362397	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	3.69818322130194	3.76482816758102	3.27814697347712	3.38722062004893	3.68016766707716	3.76519927823681	3.63138548693786	3.97247594486011	0.692056167707428	0.166466547519424	0.457775001145587
Merged-chr19-12011795-4	chr19	12011717	12011917	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24923.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	5.1568995933447	5.54887153293619	5.47485200846445	5.29477433969852	4.97259564571085	5.04443642689114	5.06584359335588	5.15424437758679	-0.592598445046377	0.0497085449594544	0.230826557092361
Merged-chr16-90279234-4	chr16	90279129	90279329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 1 of 19)	intron (NM_001346799, intron 1 of 19)	5257.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	5.94673605146946	6.11485315974119	5.8322635096054	6.19899129393642	5.5751992962898	5.61996046438545	6.06229812961229	6.00803526079638	-0.342032197768953	0.203389824366621	0.506170662223812
Merged-chr12-80757994-2	chr12	80757894	80758094	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001008423, exon 2 of 2)	exon (NM_001008423, exon 2 of 2)	2721.0	NM_001008423	380768.0	Mm.29367	NM_001008423	ENSMUSG00000062961	Ccdc177	Gm1568	coiled-coil domain containing 177	protein-coding	2.9055626673032	2.92349111294525	2.90589744385354	2.83528892598983	2.94515308802078	3.19736968155615	3.01740213984711	3.02727758700871	0.668964758419107	0.246073120614065	0.557330914569909
Merged-chr10-110794744-2	chr10	110794649	110794849	+	768.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49310.0	NM_178609	52679.0	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e|E2F-7	E2F transcription factor 7	protein-coding	3.35707246602087	3.03365833227483	3.13510561019867	3.11445620575537	3.33677593461971	3.18250693063161	3.238493796659	3.07151585678866	0.210281124784663	0.704310736316439	0.881196215574832
Merged-chr9-44089456-4	chr9	44089352	44089552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198092, intron 3 of 12)	intron (NM_198092, intron 3 of 12)	4532.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	7.77167699846996	7.61839278279914	7.47713575151319	7.80561793670225	7.13972322793443	6.90552693851339	7.37366246934245	7.15747920453173	-0.700690050106624	0.000292022312581375	0.00496437931388338
Merged-chr11-4222530-4	chr11	4222416	4222616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028022)	TTS (NM_028022)	4265.0	NM_028022	71962.0	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik|Castor1	GATS protein-like 3	protein-coding	6.45617157578927	6.35647882995294	6.27191070956246	6.35491027870428	6.08648874434262	5.83186800420097	5.93427451701693	5.83900943747828	-0.652587934037848	0.00517462171276119	0.0487266039016574
Merged-chr1-156735868-4	chr1	156735757	156735957	+	913.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16947.0	NM_145413	215015.0	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	4.67458219150444	5.17341671478346	4.91493919445931	4.26914854536667	3.98446116962757	4.55975307002637	4.49403439866917	4.4239854002507	-0.92612686146212	0.0339957362223513	0.181938534479003
Merged-chr3-75276719-4	chr3	75276576	75276776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6598.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	6.07113058376533	5.9849805818565	6.33519001057578	6.25537898971107	5.91110850965023	6.18363757038039	6.10199947653956	5.76232598164299	-0.277249097614359	0.262861061084047	0.574717656257213
Merged-chr2-129504479-3	chr2	129504373	129504573	+	997.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	RLTR18-int|LTR|ERVK	32129.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	3.99919261841619	4.48513631498086	3.8396212020608	3.35902509754353	4.44486284316322	4.44219740023995	3.57945932879665	3.99734651670522	0.431883811397971	0.444010335311937	0.730462472425057
Merged-chr8-33641890-4	chr8	33641759	33641959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178648, exon 1 of 8)	exon (NM_178648, exon 1 of 8)	117.0	NM_178648	108159.0	Mm.29301	NM_178648	ENSMUSG00000052906	Ubxn8	D0H8S2298E|Rep-8|Rep8h|Ubxd6	UBX domain protein 8	protein-coding	6.21538244120001	6.3992406588003	6.6766103286608	6.30337745895242	5.96109929014291	6.6261921844407	6.16473001360091	6.08705613491159	-0.271431195667374	0.293281445467215	0.605875232443865
Merged-chr15-64276488-4	chr15	64276407	64276607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	36166.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	5.69225139715666	5.44841577372091	5.91578409188808	5.72945724985847	5.35279440915693	5.59904628544842	5.63989822047632	5.29231705877385	-0.395141152420175	0.159974309103709	0.44780601493208
Merged-chr6-113661698-4	chr6	113661623	113661823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	23256.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	6.80237403649178	6.84068392568052	6.09605160098418	6.37457160790923	6.75090319287218	6.96569843909582	6.74166481637815	6.60919851757441	0.302581387288264	0.221949457211899	0.530047563717821
Merged-chr5-139407273-6	chr5	139407161	139407361	+	947.0793460000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	874.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	3.61118779487024	3.71644123153358	4.00262081052404	3.60255693301745	3.74835186525749	3.54293943594662	3.85374622009291	3.95789984406087	0.149008629602736	0.754477623077566	0.903314708466436
Merged-chr14-103785323-4	chr14	103785264	103785464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58337.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	6.34417560028536	6.24208152485008	6.55350820144417	6.65848030722347	5.78418012091405	5.85237549391244	5.99916163160143	6.13284384776712	-0.8073705326343	0.000975483216958471	0.0131678209557912
Merged-chr14-73384812-3	chr14	73384733	73384933	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	CpG	456.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	4.92370570460213	5.2130909198851	5.20955127511231	5.03526329468435	5.32207873109511	5.58753145075621	5.33322825583261	5.41178945635497	0.575305365201543	0.0488230749285411	0.228389698366103
Merged-chr13-58073444-4	chr13	58073341	58073541	+	878.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 5 of 16)	intron (NM_001195075, intron 5 of 16)	28987.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	4.37024334716845	4.41816537787103	4.24295925375107	4.54918037394609	4.09559241210612	4.06396012664826	4.2243021767377	4.04735595688736	-0.752955861431433	0.0588510732492281	0.255408849631535
Merged-chr1-57472398-4	chr1	57472312	57472512	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-65738.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	5.32465711952802	5.33445936659481	5.12986427117684	5.61724134814224	5.39642458535253	5.55797109031298	5.35784472868046	5.22787299809457	0.00782096804514551	0.97911240377207	0.992606608380485
Merged-chr7-130009241-3	chr7	130009147	130009347	+	836.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47082.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	3.56919851312925	3.33643542283685	3.39702833129345	3.64699916082121	3.10892626439083	3.74161386145597	3.65740489032246	3.85562852064166	0.378751019721243	0.496035715620858	0.766048551550322
Merged-chr14-57424097-4	chr14	57424005	57424205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009376)	promoter-TSS (NM_009376)	34.0	NM_009376	21821.0	Mm.4653	NM_009376	ENSMUSG00000040040	Ift88	AW552028|Tg737|Tg737Rpw|TgN737Rpw|Ttc10|flexo|fxo|orpk|polaris	intraflagellar transport 88	protein-coding	7.93692728148882	7.82145708586337	7.70362576069747	7.94423202839042	7.68379133585389	7.6337577829319	8.14880634344873	7.68162245192357	-0.0704719078905286	0.710800401715218	0.884205822880811
Merged-chr11-117878029-1	chr11	117877929	117878129	+	794.5	f0_balb.idr	Intergenic	Intergenic	-4503.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	3.29875721603501	3.0780287763521	3.19276500297417	3.59446689284202	3.04578696514032	2.83699453867693	2.80103038891979	3.01290106148589	-1.5879836388056	0.0139442334531834	0.0997223543619148
Merged-chr17-80175187-4	chr17	80175084	80175284	+	955.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 4 of 6)	intron (NM_176963, intron 4 of 6)	32121.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	4.75793847582807	4.74998333981537	4.6783700496729	5.20336539851842	4.77428936934439	4.77014378220716	4.8472318129001	5.03385196754337	-0.063570732854121	0.857722049781262	0.946392149155271
Merged-chr17-43265393-4	chr17	43265309	43265509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4938.0	NM_133776	77596.0	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	5.21913875295542	5.76894233861492	5.28554709728431	5.72972365904645	5.38788380762099	5.29149510077142	5.49313947841582	5.69177570114741	-0.119908695560994	0.694702117516159	0.876091214911152
Merged-chr12-16210744-3	chr12	16210641	16210841	+	914.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	379029.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	5.64018471969546	6.21604620114904	5.82541067968075	6.02972993586043	3.4518009491331	3.90848685079713	3.90325695925672	4.05980121298786	-6.23792559998534	3.09411829705323e-16	6.13471438066718e-14
Merged-chr6-146642525-4	chr6	146642437	146642637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025315)	promoter-TSS (NM_025315)	-42.0	NM_025315	108098.0	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	8.59225682827464	8.87904887642819	8.80184921245296	8.84799333287281	8.93876379387772	9.18652708241956	9.09913487014376	8.81251948721802	0.28337423266354	0.0760365828831986	0.297838946738032
Merged-chr15-57892536-4	chr15	57892451	57892651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024207)	promoter-TSS (NM_024207)	-133.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	9.16545996957669	9.1831305327443	9.33442940181722	9.16337643964884	9.00854658838217	9.14734715933554	9.21458353252295	8.84002878199409	-0.188705665127707	0.214230997395155	0.519979227175078
Merged-chr17-32528925-4	chr17	32528839	32529039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001101445)	TTS (NM_001101445)	-7618.0	NM_001356302	70101.0	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	5.38959821720082	5.54601484458979	5.7096616786326	5.65195608743858	5.05400439334798	5.5664729079901	5.42236879036724	5.75166185743919	-0.212098119024257	0.481863072518938	0.756857948205431
Merged-chr2-148536810-4	chr2	148536703	148536903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93268.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	6.30722645612433	5.91546244761239	6.60669864585254	7.09263084538738	6.08060655411326	6.17075972497298	6.41661148963925	6.18637213401311	-0.522127426804449	0.0840881882211191	0.315348524018915
Merged-chr2-163788649-3	chr2	163788548	163788748	+	828.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32186.0	NM_016873	22403.0	Mm.13828	NM_016873	ENSMUSG00000027656	Wisp2	Ccn5|Crgr4|Ctgfl|Rcop1	WNT1 inducible signaling pathway protein 2	protein-coding	3.0651531546253	3.30842201296995	3.28002390720297	3.05693010712993	3.01241346894416	2.68142074486944	2.99507810510755	2.73431841035502	-1.34099745850161	0.0421317584522917	0.208081581041366
Merged-chr14-55601315-6	chr14	55601198	55601398	+	729.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_194346, exon 16 of 21)	exon (NM_194346, exon 16 of 21)	-2687.0	NM_008394	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	3.61030585592874	3.27102308003411	3.7107875983175	3.05417790567687	3.72595190029942	3.5008796020763	3.64588084742343	3.65956242424928	0.690425532520741	0.203395570054728	0.506170662223812
Merged-chr10-59702544-4	chr10	59702460	59702660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291443)	promoter-TSS (NM_001291443)	-3.0	NM_001359267	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	8.3241280658211	8.2726474120803	7.83998528443392	8.04273457779851	8.12120106208288	8.16471783877886	8.06763151903438	7.87311153207679	-0.0903425965338417	0.617175202151609	0.835375923972642
Merged-chr11-21006899-4	chr11	21006794	21006994	+	964.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84430.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	4.927197272463	5.20329737345608	5.53268034978234	5.37160526333104	5.27640277601509	5.1057110114395	4.82579860654069	5.20180078774696	-0.300848141001087	0.354723162350202	0.661365305978239
Merged-chr13-42101614-4	chr13	42101500	42101700	+	877.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	49579.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	4.21275734502866	3.86768130759201	4.11966620871924	4.05088109662555	4.47214755332603	4.29343855643586	4.36196671031201	4.25514785599096	0.720070947064393	0.0684932873996036	0.279465961812347
Merged-chr9-114843793-3	chr9	114843682	114843882	+	860.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027294, exon 1 of 4)	exon (NM_027294, exon 1 of 4)	370.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	3.83907416835241	4.13677292564633	3.62034214510698	3.98874320614248	3.90975771037732	3.61114672043966	3.77303485979081	3.93433711970266	-0.282377913296412	0.547869203962659	0.797072704524437
Merged-chr8-104534576-4	chr8	104534474	104534674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301164)	promoter-TSS (NM_001301164)	63.0	NM_144931	234664.0	Mm.237670	NM_144931	ENSMUSG00000031878	Nae1	59kDa|Appbp1	NEDD8 activating enzyme E1 subunit 1	protein-coding	7.02558906804785	6.86182771339445	7.39244364640426	7.12988697720305	6.81755837660506	6.9041237095638	6.7522045311357	6.81092273608742	-0.4086679299242	0.0476333773369535	0.225087709318663
Merged-chr7-68795807-3	chr7	68795710	68795910	+	852.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46572.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	4.08565335834768	3.60549503199705	4.48144740539291	4.19677937976344	3.1640639278654	3.49419010223211	3.56132990876712	3.80140622537122	-1.84216814011381	0.00112337953100962	0.0147638536997293
Merged-chr3-28103838-3	chr3	28103761	28103961	+	661.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 20 of 25)	RSINE1|SINE|B4	119690.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	3.28919749261781	2.9577193080338	2.97540128609442	3.52352924623246	3.06496629070534	3.3450873025188	3.22039931014428	3.49333967831983	0.248050135051336	0.68629541856324	0.871787672169905
Merged-chr2-22746962-4	chr2	22746843	22747043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27384.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	6.90672328281154	7.13171952465303	7.09301744340947	6.9048000928315	7.07725298859255	7.08456296125738	6.71808326231826	6.65399228730926	-0.146343106378576	0.488844420215498	0.761471867524214
Merged-chr7-121734264-3	chr7	121734187	121734387	+	758.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011326)	promoter-TSS (NM_011326)	-192.0	NM_011326	20278.0	Mm.35247	NM_011326	ENSMUSG00000000216	Scnn1g	SCNEG	sodium channel, nonvoltage-gated 1 gamma	protein-coding	3.33728314544911	3.27366409389724	3.27870418480544	3.32190126853459	3.52198020211357	3.32810597804215	3.38103121138491	3.54781099536193	0.513804321992171	0.310686606059591	0.622764346176166
Merged-chr15-81857882-3	chr15	81857778	81857978	+	998.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020507, intron 1 of 1)	CpG	448.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	5.26253463956349	5.17596002152419	4.92214419608651	4.50943639586716	5.52467431868361	5.49490162848309	5.20699978935637	5.28933771502875	0.75933648761796	0.0259009746937826	0.152075020847047
Merged-chr7-132786185-1	chr7	132786085	132786285	+	651.0	f0_balb.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	750.0	NM_175268	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	2.80945579801195	3.53179373577119	3.04593770125093	2.95519910899682	2.37055360897437	2.55097369412421	2.43674360380664	2.44123612677225	-4.63447844102363	2.03471793688797e-05	0.000516693499927751
Merged-chr5-90907714-6	chr5	90907559	90907759	+	885.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3760.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	3.82601282966096	3.62475787933574	3.51291672800995	3.17465073655931	3.88171380421054	3.99539237972884	3.61118949993308	3.3215356771897	0.550932687882804	0.31474473611178	0.62673172609645
Merged-chr10-80999995-4	chr10	80999872	81000072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010319, intron 1 of 3)	intron (NM_010319, intron 1 of 3)	1393.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	6.7222542358059	6.92061483717125	6.1949799267457	6.33806257358434	6.65148379475812	6.47166001780014	6.49395820884956	6.4381740048784	-0.0751006041024107	0.763148455698784	0.907119734280481
Merged-chr15-95885142-3	chr15	95885071	95885271	+	593.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 2 of 19)	intron (NM_175344, intron 2 of 19)	-55099.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	3.23110387483271	3.85761139842171	3.529019370907	3.34664025894758	3.67195073599244	3.40972174122981	3.40520920353343	3.41615898891755	-0.0808591657864364	0.881473058121697	0.955384724180766
Merged-chr6-50596933-4	chr6	50596822	50597022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027564)	promoter-TSS (NM_027564)	-332.0	NM_027564	70821.0	Mm.157323	NM_027564	ENSMUSG00000029828	4921507P07Rik	TISP74	RIKEN cDNA 4921507P07 gene	protein-coding	8.28623446910634	8.11339971981175	7.89322202584183	8.16666404137486	7.9208616426042	8.07083460526413	8.20993152825347	8.03581277039049	-0.0824818934133041	0.628129150688281	0.841427212108636
Merged-chr17-71082122-4	chr17	71082062	71082262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 17 of 36)	intron (NM_001083934, intron 17 of 36)	62605.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	7.00212310906673	6.30444008585898	7.24810439936573	7.24311396515382	6.68543097298711	6.67477929512823	6.99214027327401	7.23288738710205	-0.125324854149557	0.644033246027843	0.850082962136934
Merged-chr11-47199262-4	chr11	47199156	47199356	+	869.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 2 of 7)	intron (NM_011891, intron 2 of 7)	180046.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	4.45484992397498	4.40540146430947	4.18668408829455	4.63316207219062	4.40180925987332	4.36213608038385	4.26417194527434	4.41169499748864	-0.19504465216069	0.612696273857923	0.832832725096038
Merged-chr13-64275806-4	chr13	64275672	64275872	+	954.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172587)	promoter-TSS (NM_172587)	-784.0	NM_172587	218294.0	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	4.18514011890387	4.42031233737097	4.32185293694649	4.41569030237746	4.56065941735068	4.310782637963	4.21450123357545	4.03303889346045	-0.0927374566982603	0.818548300943929	0.930445174876607
Merged-chr15-78574442-4	chr15	78574330	78574530	+	926.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_155437)	TTS (NR_155437)	-1647.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	3.89448856935769	4.01325145662847	3.99850532126953	4.19761840371051	4.18961847804852	3.95935028389726	4.28710303331268	4.18177984828393	0.305183462023953	0.466834633675055	0.746513802802766
Merged-chr16-10979591-4	chr16	10979501	10979701	+	913.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	MLT-int|LTR|ERVL-MaLR	13520.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	4.12713483048479	3.99545196978814	4.36614590856495	4.00107051196138	3.87172253022065	3.89824797556528	3.76328747098314	3.98675802301552	-0.659232624635225	0.13269745152291	0.405729165096937
Merged-chr10-62430634-4	chr10	62430539	62430739	+	977.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359806, intron 13 of 14)	intron (NM_001359806, intron 13 of 14)	-8182.0	NM_145419	216019.0	Mm.213213	NM_145419	ENSMUSG00000020080	Hkdc1	BC016235	hexokinase domain containing 1	protein-coding	5.15053519390983	4.82585603953864	4.94340664092539	5.15207828002589	5.10873155752797	5.19186080019987	5.40884693555543	5.29829368604831	0.407503370315635	0.187008955883785	0.485257937036635
Merged-chr6-113698069-4	chr6	113697876	113698076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033463, exon 2 of 8)	exon (NM_001033463, exon 2 of 8)	926.0	NM_001033463	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	4.83224509554993	4.58407336578233	4.6027880739686	4.53627548406669	4.61023665594644	4.89669927965655	4.45038861272077	5.21840805486342	0.388816923836968	0.29995655453841	0.612179983023751
Merged-chr6-145187626-4	chr6	145187478	145187678	+	961.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177222, intron 9 of 15)	MTEa|LTR|ERVL-MaLR	23392.0	NM_177222	320662.0	Mm.207779	NM_177222	ENSMUSG00000043541	Casc1	A230084G12Rik|Las1	cancer susceptibility candidate 1	protein-coding	4.28039279751842	4.78725238144853	4.41762806253773	4.6844266392886	4.63405573453903	4.25465327618425	4.21440794637739	4.45729383583236	-0.354842946032769	0.373578062016896	0.677113210162732
Merged-chr7-97136624-4	chr7	97136533	97136733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	54882.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	6.14629439939913	5.81218125882891	6.1910464961039	6.83239339113539	6.73094242419576	6.75349981612593	7.0743644472042	6.72129117700509	0.724220050107919	0.0117555828325107	0.0885544110948541
Merged-chr16-21423156-4	chr16	21423056	21423256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285894)	promoter-TSS (NM_001285894)	38.0	NM_001285894	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	7.35973707042689	7.17172188596098	6.79183305413523	7.08103645749851	7.23757444557803	7.42573526183746	7.23386778270056	7.17850025550433	0.209720805346287	0.296443994133286	0.608478404731474
Merged-chr10-61344181-4	chr10	61344041	61344241	+	685.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013753, exon 11 of 20)	exon (NM_013753, exon 11 of 20)	39382.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	3.07070908277496	3.16129228666552	3.20622893041888	3.33742681982345	3.35025944782385	3.66244051688197	3.62379183468599	3.49219071733175	1.12079278591246	0.0379409501674317	0.194890589014045
Merged-chr16-91398277-4	chr16	91398167	91398367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 7 of 7)	intron (NM_001347258, intron 7 of 7)	-7968.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	8.56085176776277	8.50078741895197	8.66145514025014	8.47195431908901	8.49947169185315	8.74949775774786	8.68515366508168	8.17528377354051	-0.0043851751628795	0.980111717437096	0.992782655212549
Merged-chr2-13576042-4	chr2	13575952	13576152	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011701, intron 2 of 8)	intron (NM_011701, intron 2 of 8)	1741.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	5.12094285335569	4.82966257915111	5.27228144948912	5.01948324995273	5.22983909881788	5.0521244949294	4.96310369390711	5.11830190503406	0.0740450605790025	0.813398916751286	0.927857767644014
Merged-chr18-54846630-4	chr18	54846522	54846722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143558.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	6.49203646690637	6.60038485243687	6.60806782863877	6.70397750162953	6.64013414548164	6.70335461291338	6.76256113836433	6.52239623017689	0.0677751586503953	0.741166242078184	0.898139463026673
Merged-chr6-51612683-6	chr6	51612559	51612759	+	802.227783	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	67366.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	4.21299037240158	4.340071442061	4.25935721758066	4.47609737865326	3.97378560510933	4.29194126464173	4.28425963267274	4.38466237939303	-0.255061977071408	0.525796802691529	0.783367294725902
Merged-chr7-88315089-1	chr7	88314989	88315189	+	1000.0	f0_balb.idr	3' UTR (NM_009982, exon 7 of 7)	3' UTR (NM_009982, exon 7 of 7)	37004.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	3.45024566946045	3.70257611174739	3.39349151547596	3.86369080701414	3.05484095420739	3.67560342987911	3.25997491407307	3.2039229367132	-1.07468183653283	0.0636670996172745	0.267977084954053
Merged-chr4-83315525-4	chr4	83315384	83315584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	intron (NM_027238, intron 1 of 19)	8705.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	6.06173208232914	6.17905410060275	6.54776518652923	6.25872512632239	6.16945965424472	6.42137275278579	6.11613158268302	6.03638926025246	-0.123671020241882	0.609126793740164	0.83089280248568
Merged-chr11-121475927-3	chr11	121475819	121476019	+	695.255554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029878, intron 7 of 38)	intron (NM_029878, intron 7 of 38)	23970.0	NM_029878	108903.0	Mm.23686	NM_029878	ENSMUSG00000039230	Tbcd	2310057L06Rik|A030005L14Rik|mKIAA0988	tubulin-specific chaperone d	protein-coding	3.52677058823396	3.35006588747874	3.41689755023761	3.52529795420313	3.80258243043667	3.58800686323926	3.2853614181731	3.35632934252566	0.245241895387379	0.639504800613449	0.847607151813091
Merged-chr2-119360053-3	chr2	119359941	119360141	+	727.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8799.0	NM_026929	69065.0	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	3.84455378560096	3.69955596995985	3.73995598459565	4.07926575797376	3.89052945926336	4.0637626646141	3.87818560822653	3.68210135195853	0.0553006605006223	0.904879477115919	0.964691960037782
Merged-chr7-88117209-3	chr7	88117123	88117323	+	957.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001143834, intron 10 of 10)	intron (NM_001143834, intron 10 of 10)	-160862.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	4.17532726667887	4.27210754994048	4.35191905788111	4.87949408529738	3.96602305516557	3.64230552097406	4.11021870046209	4.3490917420531	-1.04949640238071	0.0288925352517755	0.163334267864834
Merged-chr2-34799826-4	chr2	34799698	34799898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145522, exon 1 of 8)	5' UTR (NM_145522, exon 1 of 8)	114.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	6.41649043151987	6.32831078837272	6.20226162456118	5.84087365482455	6.01796869899216	6.43497499459373	6.40100089609371	6.03073228010196	0.0448255580747422	0.865038119187541	0.949431756702183
Merged-chr10-120882546-4	chr10	120882451	120882651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 1 of 6)	intron (NM_177092, intron 1 of 6)	16420.0	NM_177092	320183.0	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	5.83777095053103	6.10533662768642	5.83880095717406	6.36904022775302	5.49619621845484	5.40278369724873	5.60772578564728	5.88056748993751	-0.762251386730451	0.00718534579528313	0.0621063422419499
Merged-chr11-82871251-4	chr11	82871138	82871338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164571)	promoter-TSS (NM_001164571)	-28.0	NM_001164571	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	7.9323973818245	8.11435943505225	7.91251511348419	7.6495943782877	7.94653945651677	8.02414440334023	7.91633697037492	7.61115319171699	-0.0280982115729433	0.881348822795888	0.955384724180766
Merged-chr9-94433640-4	chr9	94433533	94433733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	104448.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	7.02641856431591	6.92837907323621	6.81059612642491	7.26610036633183	7.1256126857678	7.2768885077694	7.14398552162649	7.16388525402164	0.193400413786709	0.33567356974355	0.645927430703489
Merged-chr3-137948317-4	chr3	137948181	137948381	+	908.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 4 of 8)	B4A|SINE|B4	29726.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	4.11909507679391	4.45833609679334	3.86266606740117	4.16367539082092	4.27540350518288	3.98403558431421	4.14720282654296	4.02055291431704	-0.134620919973064	0.755117759100076	0.903608318762915
Merged-chr3-89863876-4	chr3	89863786	89863986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32516.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	6.76321782853991	6.73604815624479	6.64986242095521	6.83681586997681	6.33648000434349	6.48497102619019	6.45698195663103	6.28291784890191	-0.531981106972318	0.0103507474250901	0.0809350574964873
Merged-chr5-96209471-2	chr5	96209371	96209571	+	935.7999880000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053158)	promoter-TSS (NM_053158)	-644.0	NM_001039084	94061.0	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	3.46715254405015	3.27866726440965	3.09552547524598	2.94882482282701	3.02831741038	3.07596295585034	2.95686613831911	3.21162328772271	-0.531747787344506	0.37226671335488	0.676099595682082
Merged-chr2-90547509-4	chr2	90547402	90547602	+	790.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	33145.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.19370910029433	3.63316866761395	3.40052774724572	3.52826611757351	3.79575791829669	4.00068559434349	3.6200363494021	3.87597616420785	1.13783149296537	0.024867939822519	0.147925379293588
Merged-chr4-95192214-4	chr4	95192111	95192311	+	903.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-139989.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	4.14823776184096	4.06997498950596	4.44887075078972	4.32877158137692	4.28221851639261	4.00436388216485	4.35006903934244	4.36734954839085	0.00316617665074236	0.993744809993277	0.997702270136287
Merged-chr1-119534604-1	chr1	119534504	119534704	+	559.0	f0_balb.idr	intron (NR_126486, intron 3 of 3)	MTD|LTR|ERVL-MaLR	1561.0	NR_126486	320069.0	Mm.406320	NR_126486	ENSMUSG00000101731	3830432H09Rik	-	RIKEN cDNA 3830432H09 gene	ncRNA	3.52072475491578	3.19279312955996	3.24691190420522	3.44671101268059	3.05823185416618	3.23001298860129	3.35059150636515	3.61396209213022	-0.127464332788215	0.820339931266539	0.931216561407907
Merged-chr18-23813578-4	chr18	23813492	23813692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	L1ME1|LINE|L1	9622.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	6.69476690322162	7.15992341280523	6.3142035899992	6.74781160395537	6.75017663459129	6.98639949726695	6.72003358468014	6.3297556024443	-0.0731827714541769	0.777535085920027	0.913253170065039
Merged-chr7-19405601-4	chr7	19405506	19405706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-1502.0	NM_001286039	232943.0	Mm.213403	NM_146182	ENSMUSG00000040714	Klc3	BC017147|Klct	kinesin light chain 3	protein-coding	5.82503227720813	6.09226009749931	5.67763524223182	5.9436843440055	5.6846402465089	5.85333427827085	5.64900683749508	5.56419152134584	-0.345853426004029	0.183271989654947	0.480164787678499
Merged-chr6-5110582-4	chr6	5110482	5110682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 7 of 15)	intron (NM_181595, intron 7 of 15)	83364.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	6.00760991524521	6.30863820261926	5.59668020013665	6.19045844456573	6.06568829926119	6.28921812871984	6.25206262075918	5.91320759829938	0.109024118905019	0.683964199757034	0.870489884572853
Merged-chr6-89297454-4	chr6	89297333	89297533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11708.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	5.17596513272341	5.34213211303064	5.84297149894047	6.36428564717892	5.41425882402395	5.24657641045378	5.38217476521564	5.67791824821127	-0.584377476533618	0.10942356153374	0.365262551996626
Merged-chr9-37656155-1	chr9	37656055	37656255	+	646.0	f0_balb.idr	intron (NM_025289, intron 1 of 8)	intron (NM_025289, intron 1 of 8)	1157.0	NM_025289	21376.0	Mm.28689	NM_025289	ENSMUSG00000011114	Tbrg1	AA408552|AA409675|Niam|Tb-5|mFLJ00213	transforming growth factor beta regulated gene 1	protein-coding	2.9905388742121	2.99484429616121	3.26306540735883	3.03161045241097	3.02986245481171	2.82730221451301	2.85480062248022	2.9894281646151	-0.59194107047753	0.325715567381211	0.637265490488708
Merged-chr11-75644921-4	chr11	75644829	75645029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008916, intron 7 of 11)	MIRc|SINE|MIR	-6580.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	5.80185556884508	5.86077667975658	5.59695875573407	5.90669097684636	5.82228441698729	5.56437619849113	5.96962016148555	5.77479574613784	-0.0206774656599004	0.93643080316901	0.976976301044587
Merged-chr1-157008277-4	chr1	157008137	157008337	+	967.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68611.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	5.02758323632347	5.00267872119676	5.57114745268292	5.30306550618966	4.83132924058542	4.90311168416549	4.47009357980676	5.05848246011418	-0.807321058538127	0.0215860740555644	0.13466040010526
Merged-chr4-106988154-4	chr4	106988042	106988242	+	771.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355532, intron 1 of 14)	intron (NM_001355532, intron 1 of 14)	64957.0	NM_001355532	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	3.85373306351268	3.70809121098241	3.63449346160284	4.1207470379096	4.01573415606423	3.55784118198018	4.14678974926971	3.94922361358069	0.223879801215048	0.648317957157661	0.852130573383589
Merged-chr17-80139067-4	chr17	80139018	80139218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 2 of 6)	intron (NM_176963, intron 2 of 6)	11647.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	5.02431725861192	4.83469045482062	5.27427251060134	5.31126301574203	5.03714013260473	4.85165710723494	4.96646066462608	5.35162855804059	-0.131905517407956	0.69168891900765	0.874644263031543
Merged-chr2-45654874-4	chr2	45654771	45654971	+	882.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-41734.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	4.54536826290671	4.98447470487791	4.98230417755534	4.58362625924097	4.69587199790518	4.38680603418016	4.98759786897109	4.35770286396259	-0.311465709546578	0.425031225852215	0.716641115147179
Merged-chr11-110436862-2	chr11	110436762	110436962	+	912.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	37760.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	2.50905652161394	2.51667310801935	2.58636008304805	2.29843475845923	3.00267027224478	3.09009546097549	2.96249341687069	3.02868801857475	2.94153889791759	1.51905530388387e-05	0.000399869961076737
Merged-chr7-126649503-4	chr7	126649369	126649569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029339, exon 1 of 10)	5' UTR (NM_029339, exon 1 of 10)	160.0	NM_029339	75565.0	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	5.78995504820299	5.76121607654544	5.76691510387912	5.51234918342555	5.7219846940421	6.0995985187937	5.55632371432921	5.85632505953973	0.194600362932516	0.471103256763934	0.749705558503237
Merged-chr6-29912905-3	chr6	29912786	29912986	+	919.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021414)	TTS (NM_021414)	-4127.0	NM_177204	320609.0	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	3.80536729271489	3.85973346800114	3.9154830075125	4.40863771085025	3.950260191868	4.14000805913693	3.95060940404628	4.31548586651055	0.134390522229773	0.775273285448374	0.912320643528997
Merged-chr6-53721814-3	chr6	53721719	53721919	+	623.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99006.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	2.94022240461615	3.2721976895162	3.19503025844927	3.1640981201724	3.22549519502336	3.24597791828275	3.1831780754401	3.24981665712541	0.28568971351065	0.602746265753547	0.82782634442766
Merged-chr10-80880482-4	chr10	80880355	80880555	+	850.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081688, intron 1 of 17)	intron (NM_001081688, intron 1 of 17)	639.0	NM_001081688	432478.0	Mm.235302	NM_001081688	ENSMUSG00000059406	Tmprss9	Serase-1B	transmembrane protease, serine 9	protein-coding	3.42147323626195	3.6168735209646	3.53357714772987	3.16149840544567	3.57636301933565	3.4137557701086	3.71452455574225	3.47704457826259	0.39499521581946	0.447122437316552	0.732764620286541
Merged-chr14-55577994-2	chr14	55577898	55578098	+	737.583374	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_011189)	promoter-TSS (NM_011189)	-496.0	NM_011189	19186.0	Mm.830	NM_011189	ENSMUSG00000022216	Psme1	AW413925|PA28a	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	protein-coding	4.2955932701038	4.29221653498443	4.25349993588199	4.44347999766556	3.95767830772449	4.24077775632833	3.89134481720094	4.20664694494381	-0.650184249665458	0.112312927549906	0.370466603221248
Merged-chr18-32407483-4	chr18	32407330	32407530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 2 of 17)	intron (NM_001360876, intron 2 of 17)	-29146.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	7.76955873863864	7.50268678481747	7.94148083425363	8.01461604298846	7.74409246518673	7.79661076710903	8.12446474468682	8.00359487531358	0.125710931150198	0.517567319672545	0.77894111729988
Merged-chr7-105762242-4	chr7	105762179	105762379	+	883.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162943, exon 10 of 21)	exon (NM_001162943, exon 10 of 21)	-10044.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	3.56417471179763	3.67129467164942	3.67434951842382	3.98537379872057	3.56569374699253	3.62123533918241	3.8519055225733	3.56278662856662	-0.293027211922632	0.550775154258852	0.798696180778043
Merged-chr5-105749297-3	chr5	105749215	105749415	+	737.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122768, intron 2 of 2)	intron (NM_001122768, intron 2 of 2)	48505.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	2.49557271395531	2.4389380572136	2.49578137967673	2.14889251116719	3.59822438747072	3.19148589314855	3.41230603471446	3.06904648741651	6.77632363994384	2.04750956409057e-12	2.07016595543186e-10
Merged-chr3-152265950-3	chr3	152265853	152266053	+	938.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357206)	promoter-TSS (NM_001357206)	-158.0	NM_001357206	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	3.84319314457281	3.96563358399219	4.26053766024535	4.10497580587747	3.49328833782221	3.49064105813167	3.67186482389155	3.44092888431764	-1.63475371554494	0.000919104504310145	0.0125857905949003
Merged-chr11-83463033-3	chr11	83462920	83463120	+	858.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172797)	promoter-TSS (NM_172797)	20.0	NM_172797	118453.0	Mm.264648	NM_080453	ENSMUSG00000020682	Mmp28	D130023P12	matrix metallopeptidase 28 (epilysin)	protein-coding	3.73722751272005	3.68940893026837	3.97889204363692	3.56025101621373	3.7634632421699	3.74521069113629	3.82339942375299	3.93174731161197	0.23582550098337	0.608723548224199	0.830744946680157
Merged-chr3-144242274-3	chr3	144242180	144242380	+	598.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37025.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	3.73707337215649	3.64402200264714	4.10688546583203	3.58231482917554	3.58907687838194	3.6849414858439	3.82396407481456	4.06356447252022	0.0740061871466063	0.879707558047268	0.954974140832096
Merged-chr7-4513416-4	chr7	4513290	4513490	+	878.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360154, intron 4 of 12)	intron (NM_001360154, intron 4 of 12)	2585.0	NM_001277903	21955.0	Mm.358643	NM_011618	ENSMUSG00000064179	Tnnt1	AW146156|Tnt|sTnT|ssTnT	troponin T1, skeletal, slow	protein-coding	4.20493186551642	4.5252845241184	3.95755425210922	4.00046248506267	4.31244873622842	4.2371025476738	4.18699933504687	4.10950795999445	0.0746345651290187	0.859672665855983	0.946955274036401
Merged-chr5-91308101-3	chr5	91307995	91308195	+	798.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25019.0	NR_040428	100503265.0	Mm.125059	NR_040428	ENSMUSG00000107198	Gm19619	-	predicted gene, 19619	ncRNA	4.03469871282264	3.94993436285973	3.89222870740746	4.01311298557162	3.93346355161749	4.11168817392028	3.71728668549606	3.78509403639388	-0.224492043520296	0.608503256236642	0.830675049522223
Merged-chr19-10295377-4	chr19	10295260	10295460	+	868.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	9517.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	4.31948203097083	3.94636163778021	3.86503036691186	4.27702421663451	3.92666543216414	3.92975238824422	4.04943454393489	4.06454118240574	-0.355416495086375	0.413994884115402	0.708838812152508
Merged-chr1-87873219-4	chr1	87873130	87873330	+	921.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177646, intron 1 of 29)	intron (NM_177646, intron 1 of 29)	-18931.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	4.31613373081347	4.57677873585292	4.98706917837355	5.04483883912516	4.56184797552086	4.68505013083782	4.61450688843854	4.82046330211646	-0.229567920856535	0.55035680536559	0.798595515423152
Merged-chr4-156087575-4	chr4	156087482	156087682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22416.0	NM_145557	230996.0	Mm.318925	NM_145557	ENSMUSG00000059939	9430015G10Rik	-	RIKEN cDNA 9430015G10 gene	protein-coding	5.06181226276028	4.95026101828643	4.92429423815233	5.12222135925618	5.20556962105816	4.72757921302236	5.10137571329795	5.09153409009848	0.0558432560384893	0.861421638918695	0.94763968960626
Merged-chr16-48865196-4	chr16	48865074	48865274	+	954.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7434.0	NM_181596	245195.0	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	4.96159049987968	4.70623335785638	5.09216353384074	5.20368840677475	4.5137641219897	4.32802025534065	5.41142070798712	4.92445777194457	-0.285037904577031	0.490398093150835	0.762190664724398
Merged-chr15-78931786-4	chr15	78931681	78931881	+	968.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3152.0	NM_133800	97961.0	Mm.157216	NM_133800	ENSMUSG00000033099	Nol12	C78541|Nop25	nucleolar protein 12	protein-coding	5.56700589014766	6.02561853745682	5.04839002275273	5.183990512498	5.15126017548614	5.43312846824812	5.35185845521679	5.08205331900004	-0.448203256148445	0.201709811027486	0.504156139969769
Merged-chr2-92484743-4	chr2	92484644	92484844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24226.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	5.35632920814353	5.05531320483688	5.54517351485117	5.32395719905025	5.28862459291667	5.27845745100088	5.56557666021985	5.06224277683792	-0.0289912585481313	0.924358700956286	0.971978099765165
Merged-chr5-115488315-4	chr5	115488207	115488407	+	985.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3823.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	5.5092237341221	5.70154487416985	5.23387369000119	5.75287522960344	5.52287160229361	5.15283990019956	5.36784149971187	5.92448438163028	-0.08637837391259	0.784329704280029	0.916033204453207
Merged-chr16-91741124-3	chr16	91741049	91741249	+	650.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	11778.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	3.08510953244988	2.97946723835247	3.14237782525308	2.96891856497691	3.03129625199566	2.86261119471743	3.13000694012832	3.14064742937879	0.0258214885657725	0.964293208193666	0.987309283922085
Merged-chr3-89246420-4	chr3	89246304	89246504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025327)	promoter-TSS (NM_025327)	-34.0	NM_025327	66059.0	Mm.177991	NM_025327	ENSMUSG00000042747	Krtcap2	0610010I12Rik|Kcp2	keratinocyte associated protein 2	protein-coding	6.37898274843679	6.45805455561454	5.76687611513567	6.41576510701501	6.50498296539685	6.30822587668012	6.23926609088896	6.28566123965234	0.075472936372085	0.76575315737465	0.908357650317684
Merged-chr14-70403163-3	chr14	70403057	70403257	+	691.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021308, intron 10 of 22)	intron (NM_021308, intron 10 of 22)	25937.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	3.28378129345387	2.95663238937381	2.91511309553304	3.26228241451526	3.0788573716565	3.16003239772723	3.10156539410326	3.47966481969778	0.3483876864476	0.556793669508734	0.802235069284239
Merged-chr13-24862744-3	chr13	24862666	24862866	+	761.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081051, intron 5 of 20)	intron (NM_001081051, intron 5 of 20)	17635.0	NR_131787	210108.0	Mm.261514	NM_001081051	ENSMUSG00000006711	D130043K22Rik	4930451E12Rik|Kiaa0319	RIKEN cDNA D130043K22 gene	protein-coding	3.05764927986404	3.23153215944953	3.1234105637227	3.17007931111256	3.27253621654441	3.35768346221443	3.49177260247873	3.30043592205747	0.756937168888133	0.154441399928639	0.439771846038484
Merged-chr19-18646608-2	chr19	18646509	18646709	+	888.166626	f0_balb.idr|f1_c57bl6.idr	intron (NM_145497, intron 8 of 8)	B3A|SINE|B2	14593.0	NM_145497	225994.0	Mm.211595	NM_145497	ENSMUSG00000037847	Nmrk1	AA408380|D630020N23Rik|Nrk1	nicotinamide riboside kinase 1	protein-coding	3.34398650295436	3.57414915551014	3.62511229427552	3.8126227715033	3.53159987760583	3.45673338722031	3.5594421646455	3.46228472193459	-0.354075350957931	0.485292601591354	0.759216653544759
Merged-chr16-19979987-4	chr16	19979902	19980102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183390, intron 1 of 6)	intron (NM_183390, intron 1 of 6)	3047.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	6.32400107730055	5.96299762607245	6.01021647144064	5.88255206648911	6.03831550704142	5.95392925629573	5.9365274182374	5.64158466291236	-0.219935196400314	0.396006367679248	0.6950249619634
Merged-chr5-92487451-4	chr5	92487356	92487556	+	969.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	18201.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	5.16238831324075	4.86596339213086	5.35479586289638	5.76089627775876	5.44867374003473	5.34039678569608	5.38561987428206	5.61702160420848	0.17784791271901	0.598908199127512	0.826140708623809
Merged-chr11-21011014-1	chr11	21010914	21011114	+	704.0	f0_balb.idr	Intergenic	Intergenic	-80310.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	2.98151161953039	3.07851526668901	3.15162045650571	3.19822598852571	2.85470453537158	2.74164533876777	3.02966047739726	2.85360695160447	-1.03141651165078	0.093711886359499	0.334855339316405
Merged-chr6-39379469-4	chr6	39379355	39379555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1748.0	NR_155077	72144.0	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	6.64834545961248	6.72527387945513	6.7502563006525	6.65087314504302	6.50700519724244	6.44509756474436	6.29438834942972	6.51884501937969	-0.354901325666375	0.0858711264607067	0.319251772474855
Merged-chr2-62643520-4	chr2	62643415	62643615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164477, intron 1 of 14)	intron (NM_001164477, intron 1 of 14)	2740.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	5.49250972886953	5.45504928175608	5.57525832282496	5.48756392501201	5.38302034816071	5.80035117617018	5.74106876932259	5.43206551934054	0.156010002721521	0.572389778378623	0.811251013052168
Merged-chr3-81149343-4	chr3	81149243	81149443	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357746, intron 3 of 6)	intron (NM_001357746, intron 3 of 6)	112927.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	5.79566623138666	5.03010561184502	5.56069161015245	5.76555522632381	5.19125645763503	5.47880796960247	5.27604083389871	5.53053384303933	-0.362087239487282	0.255369533383877	0.566907550868438
Merged-chr12-29696853-4	chr12	29696773	29696973	+	889.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361657, intron 3 of 24)	intron (NM_001361657, intron 3 of 24)	-10428.0	NR_046080	328075.0	Mm.447832	NR_046080	ENSMUSG00000112663	C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	5.49250413092809	4.9857768336447	4.99806994239853	5.44593103890842	4.82697714634614	5.13790297782236	5.13953617098062	4.7610977427352	-0.551093507206045	0.102827643042915	0.35216269069915
Merged-chr4-149990482-4	chr4	149990349	149990549	+	764.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291004, intron 3 of 4)	intron (NM_001291004, intron 3 of 4)	12787.0	NM_001291004	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	4.02903236521551	3.82178968001425	3.94229657175237	3.84253108269861	3.68940551801289	3.69517610556021	3.67879145084829	3.63503767778571	-0.690732839975403	0.12977994027484	0.400989988662711
Merged-chr1-75254447-4	chr1	75254343	75254543	+	945.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359281, intron 12 of 22)	intron (NM_001359281, intron 12 of 22)	9328.0	NM_001359281	19275.0	Mm.2902	NM_008985	ENSMUSG00000026204	Ptprn	IA-2|mIA-A|mKIAA4064	protein tyrosine phosphatase, receptor type, N	protein-coding	4.93878298252909	5.06051087755944	5.04201369319499	4.98186888649249	5.10139690867169	4.84163869831696	5.11139666603652	4.7857923064694	-0.0553908759835524	0.861272736150961	0.947574515069552
Merged-chr11-8634864-4	chr11	8634752	8634952	+	899.8833619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	29683.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	4.34985354132324	4.45837516343569	4.39085664362395	3.94827547290342	4.26393226928417	4.3484548278971	4.06056839681951	3.91424982892343	-0.323359094264402	0.455628555097568	0.739054394131757
Merged-chr19-12457547-4	chr19	12457435	12457635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3244.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	6.47772399747726	6.40256873490831	6.5592722690458	6.61059094653799	6.33983798571225	6.35785676839226	6.22991572483981	6.49072809293041	-0.242672888657671	0.259766108395738	0.571563806638815
Merged-chr18-12188823-4	chr18	12188711	12188911	+	987.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008720)	TTS (NM_008720)	20081.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	4.94437571504182	4.8140491369894	4.9110025579649	4.95334968017517	4.70174796288417	4.7757414724831	4.88740094186971	4.90770275109209	-0.191532514187429	0.552830132438249	0.799873237323185
Merged-chr12-102456237-1	chr12	102456137	102456337	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-12897.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	4.16742863152517	4.55152647902175	4.76515418940687	4.51405263843914	4.34455548297488	4.54445153059751	4.6725986314744	4.72743030042058	0.128052885671881	0.737539290919571	0.896392006995728
Merged-chr9-66277898-4	chr9	66277787	66277987	+	882.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72563.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	4.468177962798	4.23929922021926	4.11785728056629	3.96324427711235	4.44200917598688	4.3420152940007	4.28601115120926	4.38694942643226	0.42541939058248	0.286597627451254	0.598285260414488
Merged-chr9-108608180-4	chr9	108608157	108608357	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151664, intron 12 of 15)	B1_Mus1|SINE|Alu	-10645.0	NR_151688	74443.0	Mm.226534	NM_028944	ENSMUSG00000006675	P4htm	4933406E20Rik|AI853847|BB128974|HIF-PH4|HPH-4|P4H-TM|Ph-4	prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)	protein-coding	4.7099012104841	4.43126577576122	4.71071184375299	3.64615553023909	4.39510141422026	4.24990956739028	4.34366641116563	4.52663910119371	-0.125596160552894	0.79116427982441	0.918981743723326
Merged-chr11-21288319-3	chr11	21288215	21288415	+	999.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290628, intron 7 of 22)	B2_Mm1t|SINE|B2	49283.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	5.16990037303263	4.77221502542324	4.94503213725005	4.65834523323826	4.20083056008497	4.44857623646314	4.39482078137207	4.36407260778428	-1.20543969187067	0.00151565187772434	0.0188309626469787
Merged-chr17-26231572-2	chr17	26231497	26231697	+	688.0	f0_balb.idr|f1_balb.idr	intron (NM_001206335, intron 1 of 12)	B4A|SINE|B4	12645.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	3.69200549867119	3.36195677443358	3.59097493809995	3.72649293892281	3.45892375135886	3.40826953435126	3.62772566818288	3.69035369169993	-0.18284156172697	0.714880876194863	0.886003030420421
Merged-chr6-92241363-4	chr6	92241262	92241462	+	831.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009426)	TTS (NM_009426)	3288.0	NM_009426	22044.0	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	3.5148152411453	3.63862281468341	3.45357877748603	3.59949057364179	4.01294315455078	3.74828033527448	3.77044001423042	3.87836951917043	0.910944042134353	0.0494470646005469	0.230098889330696
Merged-chr8-110266928-2	chr8	110266828	110267028	+	967.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172916)	promoter-TSS (NM_172916)	-49.0	NM_172916	244653.0	Mm.444803	NM_172916	ENSMUSG00000059854	Hydin	1700034M11Rik|4930545D19Rik|4932703P14|672398|A830061H17|AC069308.21gm4|Gm9558|hy-3|hy3|hyrh	HYDIN, axonemal central pair apparatus protein	protein-coding	3.39562486996784	3.00655973788546	2.89280389284811	3.00582197919362	3.19527880711895	3.45875800579027	3.38155841199509	3.49443294946724	1.11284784193585	0.0505881353657568	0.233289112840458
Merged-chr13-64040070-3	chr13	64039954	64040154	+	742.011108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49147.0	NM_008291	15487.0	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	4.09503182532051	3.57137202964309	4.39176252154197	4.19221547099415	3.3589690763219	3.64721255208261	3.63645772532965	3.64856380930549	-1.5683629484775	0.00259747457575049	0.0285537672320222
Merged-chr11-106562959-4	chr11	106562847	106563047	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198292, intron 2 of 11)	MTEb|LTR|ERVL-MaLR	49983.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	5.77083990622622	5.99882840768364	5.92633632602587	6.04567400634646	5.67230971334182	5.1728339929656	5.36446713363469	5.2889613314179	-0.905660095662231	0.00135365063122441	0.0172025528084132
Merged-chr16-8674344-4	chr16	8674256	8674456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2203.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	6.41562902920705	6.59536298341193	6.43484845117712	6.65726650702809	6.74689618510615	6.76301554145105	6.60000818831047	6.68896129333599	0.230159907292814	0.266814388376914	0.57842963999018
Merged-chr4-142074299-4	chr4	142074247	142074447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	G-rich|Low_complexity|Low_complexity	-9951.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	5.31450372805284	5.40577804434128	5.40708244686808	5.36641378917825	5.75798582408607	5.5223599010757	5.64327168055453	5.43244306992416	0.39879580640428	0.141471941762405	0.418512586455517
Merged-chr19-11045181-4	chr19	11045084	11045284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5382.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	6.15650893910977	5.79147731125198	5.83850794836789	5.76212561104118	5.91736464433094	5.96579698796337	6.34768215001988	5.70730427737074	0.18603905630248	0.490694058697006	0.762400819008103
Merged-chr7-114301692-3	chr7	114301587	114301787	+	962.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_A_Mam|LINE|RTE-X	-25571.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	4.57007655933534	4.26434354841375	4.0285616286404	4.64508254548767	3.49296459747299	3.69493220411076	3.56035513933644	3.6367965287764	-2.4044614223813	1.5799057352018e-06	5.29953394561399e-05
Merged-chr17-87265960-4	chr17	87265869	87266069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139295)	promoter-TSS (NM_139295)	-22.0	NM_139295	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	7.57556358256927	7.56173077982184	7.88824457598054	7.56957409060513	7.69618283063216	7.77231690209444	7.99630902348432	7.75665122723396	0.20568723138007	0.251343948780242	0.562768509915974
Merged-chr7-114356651-4	chr7	114356539	114356739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029438, intron 3 of 4)	intron (NR_029438, intron 3 of 4)	58522.0	NR_029437	71045.0	Mm.235682	NR_029437	ENSMUSG00000087475	4933406I18Rik	4933403D24Rik	RIKEN cDNA 4933406I18 gene	ncRNA	7.71051132365178	7.77033204282285	7.71180922916591	8.0143879021684	7.90984963605599	7.68327112026419	7.94712082215548	7.80199576808226	0.0313342455304885	0.858551337195293	0.946576014812915
Merged-chr9-25289375-4	chr9	25289277	25289477	+	828.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359738, intron 5 of 12)	intron (NM_001359738, intron 5 of 12)	36485.0	NM_001359738	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	4.43768643729458	4.54228275157935	4.43836377887814	4.81820728023021	4.59998155677086	4.47501550657603	4.69463418332596	4.60205884247064	0.0136952738055123	0.970272432856274	0.989328178694086
Merged-chr6-134065283-4	chr6	134065185	134065385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	29585.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	7.56405516395711	7.48737608794045	7.61697205717296	7.57298832305963	7.37494190490216	7.34282087605355	7.49259293567656	7.57758227697716	-0.149196505923821	0.384908267465171	0.686335535913647
Merged-chr17-50576217-4	chr17	50576113	50576313	+	968.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	66666.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	5.10418513472781	5.5146360550637	5.17104444425534	5.78912226420101	4.6378206436603	5.14005105745185	4.97516660671818	5.06728012599063	-0.909047899326153	0.0087500844412941	0.0716876450790599
Merged-chr2-24919630-4	chr2	24919521	24919721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172545)	promoter-TSS (NM_172545)	-12.0	NM_001109686	77683.0	Mm.24176	NM_172545	ENSMUSG00000036893	Ehmt1	9230102N17Rik|D330003E03|Eu-HMTase1|GLP|GLP1|KMT1D|mKIAA1876	euchromatic histone methyltransferase 1	protein-coding	7.46863953220933	7.18486276204256	6.64935447735874	6.75560750813034	7.18796358450953	7.4348992693945	7.39707487395523	7.04853131193711	0.305687966204927	0.207018646986813	0.511049184276
Merged-chr4-9115568-2	chr4	9115468	9115668	+	860.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-153725.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	2.9951040134573	2.98887896529004	3.10837943050981	2.80525560519388	2.69058631228516	2.91312793808997	2.8621668192251	3.05147245257868	-0.402516620416241	0.516919873425723	0.778586893307058
Merged-chr12-102719787-4	chr12	102719691	102719891	+	847.145874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14922.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	3.91631408938681	4.18395401836702	3.86078725918084	4.05517199871462	4.31724914974913	4.5419155328192	4.19179611725307	3.96839722002429	0.643942586879412	0.130385130897638	0.40193242336713
Merged-chr16-57441238-4	chr16	57441150	57441350	+	927.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	87973.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	4.77400980464476	4.75406340732843	5.39565827206793	5.38604934328107	5.0807794256286	4.68211488341348	5.71092955758557	5.06865621161159	0.140907353382513	0.726381302542084	0.891048595151107
Merged-chr2-12382812-4	chr2	12382709	12382909	+	973.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355537, intron 8 of 13)	intron (NM_001355537, intron 8 of 13)	36651.0	NM_001355537	66960.0	Mm.34059	NM_024185	ENSMUSG00000026767	Mindy3	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958|Fam188a	MINDY lysine 48 deubiquitinase 3	protein-coding	5.50579893153481	4.71879728314345	5.60513127633802	5.84678804599478	5.18496881735297	5.15378037341657	5.06080876075929	5.15133067385022	-0.638137640910969	0.076222297818828	0.298247866332052
Merged-chr11-101627870-4	chr11	101627735	101627935	+	948.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025654)	promoter-TSS (NM_025654)	-114.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	4.1081269793609	4.19707931482076	3.96373734593034	3.55524958853134	4.2256451670428	4.18747384231142	3.84195706358127	4.23626834929651	0.440743201079347	0.341992145319915	0.650969323021991
Merged-chr17-33843201-4	chr17	33843104	33843304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305169)	promoter-TSS (NM_001305169)	113.0	NM_019421	54219.0	Mm.11175	NM_019421	ENSMUSG00000002308	Cd320	425O18-1|8D6|D17Ertd716e|NG29|TCblR|VLDL	CD320 antigen	protein-coding	6.03661206458769	6.52431404175745	6.26182520236002	6.14058252234967	6.31334528162432	6.12295894566483	6.02887055249669	6.29410603668613	-0.0772963294627464	0.749916531290728	0.901564247164595
Merged-chr14-120910519-2	chr14	120910427	120910627	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_023579)	promoter-TSS (NM_023579)	-667.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	5.8330120858922	6.24654758103887	6.08373463436951	5.71006439162456	6.09468367053751	6.33804884804239	6.22451920609772	5.87905553154756	0.261670735377232	0.32029244802215	0.632139086587234
Merged-chr12-4595278-4	chr12	4595201	4595401	+	900.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198969, intron 1 of 16)	intron (NM_001198969, intron 1 of 16)	2293.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	4.11316972353313	3.82057926315962	3.87440134117621	4.36316122925557	3.88702841592589	4.047910414201	4.09534178527474	3.64342558524167	-0.397908263144212	0.397808224992584	0.696054529321669
Merged-chr14-70289488-4	chr14	70289386	70289586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008915)	promoter-TSS (NM_008915)	11.0	NM_001360229	19057.0	Mm.439683	NM_008915	ENSMUSG00000022092	Ppp3cc	Calnc|PP2BA gamma	protein phosphatase 3, catalytic subunit, gamma isoform	protein-coding	7.15139408066818	6.9122415243757	6.89629816724497	6.87369630063792	7.04880823961577	6.82010188956282	7.22180362355974	7.0561822365528	0.124961881425768	0.530583237952685	0.786664175174204
Merged-chr4-150117509-3	chr4	150117415	150117615	+	921.744446	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1829.0	NM_019741	56485.0	Mm.260220	NM_019741	ENSMUSG00000028976	Slc2a5	AI526984|Glut5|Slc5a	solute carrier family 2 (facilitated glucose transporter), member 5	protein-coding	3.42381328085829	3.38161294072126	3.50603285421073	3.03658174622351	5.33333533940442	4.39466221473842	5.06671727526882	5.34653299783598	4.81161532602039	1.18842461679222e-18	3.35678078566084e-16
Merged-chr7-122087750-4	chr7	122087648	122087848	+	986.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028177, exon 5 of 5)	3' UTR (NM_028177, exon 5 of 5)	14100.0	NR_153798	70316.0	Mm.3014	NM_028177	ENSMUSG00000030869	Ndufab1	2210401F17Rik|2310039H15Rik|2610003B19Rik|8kDa|9130423F15Rik|ACP|CI-SDAP|SDAP	NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	protein-coding	5.08618416378559	4.82481848943671	5.54902802801046	5.84717758631048	5.15583732942787	4.56078967848664	5.3121474062632	5.33529107476143	-0.494475058921827	0.21465912566683	0.520592671257043
Merged-chr5-64503666-4	chr5	64503565	64503765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	26657.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	5.99393624008445	5.47038399353053	6.22468165996236	6.15814379252837	5.77528637509185	5.66426447382593	5.68472058786922	6.03201113523498	-0.320841600219489	0.263017485455138	0.574802628099824
Merged-chr16-94526584-4	chr16	94526478	94526678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007834)	promoter-TSS (NM_007834)	51.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	7.9755881656794	8.22359666268193	7.94820553650034	7.62140682266806	8.39415202372486	8.67530583267331	8.40054732872605	8.09952482105771	0.579355514364185	0.00391938403504903	0.0394359181154285
Merged-chr8-111596004-4	chr8	111595900	111596100	+	915.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	34322.0	NM_027570	52815.0	Mm.27589	NM_027570	ENSMUSG00000031958	Ldhd	4733401P21Rik|D8Bwg1320e	lactate dehydrogenase D	protein-coding	4.94801699736605	4.72462348189813	5.13379277564611	5.41528025611336	4.4979607376394	4.65247002206986	4.49856598002741	4.56134809435723	-1.13794492411006	0.00186205554517248	0.0221371080796138
Merged-chr19-44389783-3	chr19	44389685	44389885	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17924.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	4.44726044203676	5.01406911339723	5.45491452064814	5.4797366498851	4.30694775630749	3.99730781620734	4.16884609988005	4.62310422323431	-1.86826742204389	3.28473165062472e-05	0.000785240116564676
Merged-chr12-40485463-1	chr12	40485363	40485563	+	699.0	f0_balb.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	39410.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	3.23169864399887	3.2528600122376	3.17624162256409	3.25241175249328	3.23595642161734	3.03064076821748	3.04665245525184	3.05514148308336	-0.507561297669075	0.364905047480419	0.669640641603313
Merged-chr4-32391470-1	chr4	32391370	32391570	+	632.0	f0_balb.idr	Intergenic	Intergenic	-25965.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	2.62971755454056	2.53985840606569	2.95892784989136	2.74017607602269	2.22351767884212	2.45636735595751	2.34719471625041	2.49746817008164	-2.08242903875463	0.00927024035126554	0.0747542779327064
Merged-chr1-74339324-4	chr1	74339246	74339446	+	708.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019999, intron 1 of 8)	intron (NM_019999, intron 1 of 8)	6736.0	NM_019999	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	3.43259516266553	3.57488340490331	3.81449891172194	3.53713935117671	3.74812360932586	3.67052551788799	3.84360808325588	3.7641930617117	0.510237116516128	0.276082953794426	0.588116016284595
Merged-chr10-8890695-3	chr10	8890589	8890789	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4619.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.35348867402835	4.6268255088409	4.31600934677145	4.6109927435049	3.24422103527042	3.36511314345082	3.60007345892608	3.54451621808741	-3.48170627297386	1.8153250545762e-09	1.10912465287278e-07
Merged-chr8-57800024-4	chr8	57799921	57800121	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175032, intron 10 of 11)	intron (NM_175032, intron 10 of 11)	-146966.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	5.07068961813505	4.98428390358695	5.56059700638858	6.00898647525625	5.69936390630867	6.04424136253925	5.55908741538942	5.6607205521226	0.426781530954474	0.233793608714621	0.543492448306542
Merged-chr12-3873028-4	chr12	3872920	3873120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 5 of 22)	intron (NM_007872, intron 5 of 22)	-10776.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	6.80515616933024	6.85960227106737	6.45867521810424	6.40902784423379	7.15867332516188	6.52352744519133	6.9387576000135	6.80151244691924	0.34756988421537	0.145943674079025	0.425830079002702
Merged-chr7-80789263-4	chr7	80789162	80789362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	14069.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	5.89634577859452	5.98302026507918	5.44156419303085	5.48973656047945	6.06146792454297	6.09419070421392	5.95378504302054	5.8704529766582	0.459545594258592	0.0888234739105731	0.325224591022669
Merged-chr1-24005610-4	chr1	24005500	24005700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026503)	promoter-TSS (NM_026503)	40.0	NM_026503	68002.0	Mm.250424	NM_026503	ENSMUSG00000026154	Sdhaf4	1110058L19Rik|1700001E18Rik|C6orf57	succinate dehydrogenase complex assembly factor 4	protein-coding	7.06610029847279	6.84079489199933	7.21635719412484	7.00889873056416	6.27578453945872	6.55489878417574	6.63741285226554	6.6511222686124	-0.721403049670263	0.000775787804226971	0.01097372816317
Merged-chr8-46881478-4	chr8	46881389	46881589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105398.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	6.66181100020908	6.59423397704375	6.84396972780818	6.48359521678365	6.54890235952262	6.51804821259035	6.43596592722078	6.78618634932742	-0.0906057317280966	0.677263818388309	0.867577815694437
Merged-chr3-84598147-4	chr3	84598043	84598243	+	980.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4569.0	NM_207278	403175.0	Mm.83086	NM_207278	ENSMUSG00000047819	Tigd4	C130063O11Rik|Gm418	tigger transposable element derived 4	protein-coding	4.99042229354728	5.1615097890478	4.72967645404636	4.83747920046633	4.80023885939366	5.02303447164241	4.93309925180059	5.11611580516226	0.0591338231534569	0.857052207676439	0.94616653253742
Merged-chr2-84511733-4	chr2	84511585	84511785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-4812.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	5.65240864666038	5.66918567405633	5.7871074924128	5.13385160873142	6.44436322130052	6.40685320710676	6.3024820554073	6.07634187130438	1.20804946041124	1.00823408030174e-05	0.000277085303481844
Merged-chr5-105731757-4	chr5	105731657	105731857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	30947.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	5.85658708888541	5.82829730082989	5.80840604143574	5.80760914901879	6.16997763629508	6.12599525222846	6.16281414255022	6.11404981314063	0.506413189937656	0.0279498932830893	0.159975391430162
Merged-chr4-145239900-4	chr4	145239776	145239976	+	790.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	6994.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	4.22986475461708	3.84751924622237	4.18768786201301	4.44285085438648	4.05571308297595	3.84042929831414	3.87998910520734	4.26920348934781	-0.468029065571086	0.299359648159331	0.611562066856898
Merged-chr2-167942475-3	chr2	167942405	167942605	+	796.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	10178.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	3.27908427299701	3.3226117406969	3.8256334537439	3.07493170111496	3.41943492772202	3.33017574353517	3.26766708544657	3.50394450118057	-0.0479590606933524	0.932882167547642	0.975805604924077
Merged-chr3-149085026-3	chr3	149084927	149085127	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130392.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.99548028495336	4.91178891556492	5.60398422738734	5.83861484172705	4.25398433627114	4.43385996413277	4.66960107256213	4.40445869308491	-1.9732237623054	1.02660729211113e-06	3.59080493588098e-05
Merged-chr5-122536181-3	chr5	122536144	122536344	+	907.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34019.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	3.05580746407301	2.79033870007427	3.00165836828656	2.75672661166235	3.0195853992216	2.71850800944436	2.81287068263919	2.75528860852909	-0.276156788803652	0.665234379720392	0.861320791391846
Merged-chr12-103425935-4	chr12	103425835	103426035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020494)	promoter-TSS (NM_020494)	-68.0	NM_020494	27225.0	Mm.3935	NM_020494	ENSMUSG00000041645	Ddx24	1700055J08Rik|2510027P10Rik|AI649272	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	protein-coding	9.22332891334098	9.06857811051062	9.12494315588752	9.18376936494977	8.9287164917274	9.1620935532258	9.33101879067301	8.88819837751791	-0.0783810674907696	0.624392137895424	0.839393596001854
Merged-chr7-48998254-7	chr7	48998121	48998321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	39148.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	4.87039521836111	4.84369629022127	5.25034364876162	5.3307858954111	4.70787418813067	4.93202337919466	4.95299870368145	4.48584837028531	-0.647319390887483	0.0678210021797611	0.277885742237694
Merged-chr5-99298147-4	chr5	99298056	99298256	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030692, exon 4 of 4)	non-coding (NR_030692, exon 4 of 4)	-45229.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.49388214363539	5.16017402499198	5.28531265424631	5.70164226625161	5.41645642755137	5.4297768079915	5.78059860259669	5.62178611224701	0.210703398566632	0.483660936893099	0.757942401688951
Merged-chr19-45660452-4	chr19	45660365	45660565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013907)	promoter-TSS (NM_013907)	-272.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	5.66563323546247	5.55660023828259	5.21513738352472	5.52753062663558	5.64180756967022	5.56188926544529	6.07875449974483	5.85052184893345	0.488305960899735	0.0835466522716061	0.314261330763656
Merged-chr6-124830091-4	chr6	124829987	124830187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001326594)	promoter-TSS (NM_001326594)	-89.0	NM_013538	14793.0	Mm.285723	NM_013538	ENSMUSG00000023505	Cdca3	2410005A12Rik|C8|Grcc8|Tome-1	cell division cycle associated 3	protein-coding	7.35604824189821	7.43040165571449	7.20373517473933	7.35062707212332	7.73823979126151	7.79439927575609	7.71458725784149	7.18698039445371	0.389215816372515	0.0514844876569837	0.235713077021971
Merged-chr14-74947837-4	chr14	74947744	74947944	+	945.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252132)	promoter-TSS (NM_001252132)	33.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	4.51986597131152	4.64870763522397	4.20082023227102	4.51126104523237	4.52100978587094	4.42869571844715	4.68554077337469	4.47662558661112	0.105439198120072	0.77582163921031	0.912527734959236
Merged-chr11-96969285-3	chr11	96969210	96969410	+	802.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	8378.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	3.20679556254175	3.40012036067542	3.32738079800178	3.56401806874238	3.25627743729951	3.31763809913049	3.42359193973085	3.38172710207353	-0.178264821196565	0.736797213173701	0.896086114515881
Merged-chr4-128660344-4	chr4	128660264	128660464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	5662.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	6.9055068786886	6.58225018222245	6.79887794261792	7.11126264554618	6.75133742396884	6.81073127042715	6.80569635625417	6.72165977593881	-0.148443613184959	0.48842517572907	0.761285866490867
Merged-chr12-112632490-3	chr12	112632393	112632593	+	930.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 3 of 12)	intron (NM_007421, intron 3 of 12)	-12335.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	3.94872192648106	3.86065361333465	3.70759499559172	3.85049683286443	3.43068026058067	3.52635706409033	3.5246578880386	4.03172836901852	-0.597059887016295	0.231224080600338	0.540724853688999
Merged-chr8-72572077-4	chr8	72571973	72572173	+	993.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151663, exon 1 of 3)	non-coding (NR_151663, exon 1 of 3)	250.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	6.12213748346984	5.5958378018393	5.39120641042191	5.9740691179288	5.39638311551868	5.56867618396766	5.39478146620587	5.22262025069222	-0.698110394290833	0.0210421008611609	0.132453878881365
Merged-chr16-43805766-3	chr16	43805735	43805935	+	859.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007877, intron 2 of 6)	intron (NM_007877, intron 2 of 6)	43614.0	NM_007877	13490.0	Mm.439735	NM_007877	ENSMUSG00000022705	Drd3	D3R	dopamine receptor D3	protein-coding	3.61375378878375	3.62287597356401	3.81844601241908	4.09092256146658	3.32440845801883	3.48676657644488	3.70498901162786	3.76812717690108	-0.729403357540697	0.158604036139331	0.445618498595942
Merged-chr10-17772658-4	chr10	17772563	17772763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23556.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	6.66281608659084	6.92835951038715	6.81844707357507	6.48680369428586	7.43306766380325	7.36949227604991	7.31794684927117	7.15511293850299	0.83344254637802	4.14397339268252e-05	0.000960794404292343
Merged-chr3-8986075-4	chr3	8985975	8986175	+	918.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	18129.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	4.78343621664871	4.53806824711703	5.20427619643454	5.51573516632752	4.46003269321102	4.5175597203564	4.72291827120544	4.89093739427168	-0.861624689737509	0.0330886666186487	0.178547358141824
Merged-chr15-25993544-4	chr15	25993434	25993634	+	970.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144523, intron 4 of 5)	intron (NM_144523, intron 4 of 5)	9168.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	4.96823032779525	4.87268929044205	4.55194820361924	5.11968973005241	5.49534649715139	5.21215705113405	5.14146209588008	4.96571462706533	0.600654467570202	0.0800319822946467	0.306433376425533
Merged-chr2-71529708-4	chr2	71529593	71529793	+	987.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_002854)	TTS (NR_002854)	248.0	NM_010053	13390.0	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	5.08236706064496	5.37591246005329	5.04912496950437	5.3193846551742	4.95508928170633	5.0017220938513	5.35434827399758	4.8996799423308	-0.3060712924476	0.336283414619824	0.646333562921219
Merged-chr2-181273948-4	chr2	181273796	181273996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 2 of 9)	MTA_Mm|LTR|ERVL-MaLR	14070.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	7.40840417709035	7.20335423019507	7.50750777774445	6.43970475287045	6.99126020824997	7.24895874910508	7.05997550583863	7.09075647695347	-0.124868452252356	0.634954387611028	0.845499285207272
Merged-chr9-49485401-4	chr9	49485297	49485497	+	928.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172770, intron 1 of 21)	intron (NM_172770, intron 1 of 21)	828.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	4.46604546290528	4.53975527623391	4.29358980695587	4.47070932804116	4.4921278760523	4.46727091153797	4.44625456416016	4.0914437210405	-0.139785671924677	0.714164365518926	0.885697313573214
Merged-chr17-69222518-4	chr17	69222416	69222616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	54690.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	7.56333178924858	7.44336675533937	7.36633055149512	7.45265162605155	7.5026953619123	7.6604673918311	7.50100596977565	7.24336479641777	0.035867128123006	0.842914958636457	0.940323698985438
Merged-chr2-71594682-3	chr2	71594584	71594784	+	858.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-47930.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	2.78888571898866	2.71464246999845	2.78915751058133	2.31747241008925	3.79676500692937	3.61748646993664	3.72178794774967	4.28920364747981	6.88130565234126	1.34159486043568e-14	2.03895213623224e-12
Merged-chr3-9786808-4	chr3	9786698	9786898	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 1 of 7)	intron (NM_053182, intron 1 of 7)	46881.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	5.11704812699241	4.4240387911318	5.33175854117656	5.60172114664757	4.3971919803115	4.18160273640736	4.76322923927349	4.28461988065049	-1.59451280812404	0.000288869584268072	0.00492253965492388
Merged-chr13-73764644-2	chr13	73764544	73764744	+	952.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 1 of 24)	intron (NM_001360694, intron 1 of 24)	947.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	3.26470472990273	3.04251764907119	2.99078220008063	2.8973486005584	2.99842891499657	2.89965818639294	3.0954527216623	2.79190843063957	-0.405172506601643	0.505440280715083	0.771470037762552
Merged-chr13-98814169-4	chr13	98814074	98814274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 1 of 25)	L1MB7|LINE|L1	1275.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	6.09672290898272	6.38218030911143	5.81650323481142	5.87143919332728	5.75359700543363	5.60312704102243	5.83419055631571	5.68509606450385	-0.535245360279612	0.0469613391453729	0.222844310631453
Merged-chr1-174029610-3	chr1	174029448	174029648	+	970.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172648, intron 1 of 6)	intron (NM_172648, intron 1 of 6)	2207.0	NM_172648	226695.0	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	4.05231277931324	3.97851288895826	3.51747469720859	3.77384377532986	3.63478899308371	3.43741664788344	3.61885071670181	3.63099669939412	-0.793691456216676	0.109580734764757	0.365520742294421
Merged-chr3-9896587-3	chr3	9896538	9896738	+	910.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62959.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.2069683359538	3.98252156534937	4.32079168603462	4.54184633875627	3.3376330985526	3.46446481697647	3.54102967771465	3.48575138632282	-2.66211705490862	5.83257116372139e-07	2.13010047646241e-05
Merged-chr11-5098397-4	chr11	5098366	5098566	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290491)	promoter-TSS (NM_001290491)	622.0	NM_001283062	14030.0	Mm.142822	NM_007968	ENSMUSG00000009079	Ewsr1	Ews|Ewsh	Ewing sarcoma breakpoint region 1	protein-coding	5.01046430073572	4.92394341694425	4.5522490292718	4.67573551948942	5.10262479175772	4.97603559188209	4.81651132119293	4.83630719694647	0.300916857180556	0.373321611078684	0.676941431573079
Merged-chr4-134286809-2	chr4	134286709	134286909	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146156, intron 1 of 2)	CpG	444.0	NM_001163794	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	3.26312358527579	3.3960718965617	3.37921645178785	3.26119128267535	3.37324044401055	3.31278331083942	3.31034542481602	3.5331781638914	0.22465305745597	0.661649958380271	0.859502543846942
Merged-chr2-6721184-4	chr2	6721108	6721308	+	979.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	454.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	5.22666444131751	5.01692607755805	4.78458052866441	5.48231964508113	5.01305485521001	5.43217681651098	5.23230188226381	5.62190885519282	0.301340085100048	0.384515029161145	0.686052921759191
Merged-chr1-91034739-4	chr1	91034639	91034839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	Lx7|LINE|L1	-18705.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	7.27030516800744	7.40611803067346	7.36507489009103	7.22269190230367	7.38619381608768	7.53192551984185	7.46088065358953	7.12992810684737	0.0957385059269029	0.605927419062441	0.829218406549364
Merged-chr13-98926445-4	chr13	98926325	98926525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178716)	promoter-TSS (NM_178716)	-41.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	6.75877213259617	7.05412351263803	6.52959701852508	7.09966201667608	7.08920927620223	7.25363019346019	7.05329407337368	6.93685584343465	0.263393664185492	0.229212825174152	0.538064210405535
Merged-chr12-80853824-4	chr12	80853700	80853900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 3 of 6)	intron (NM_001242419, intron 3 of 6)	63268.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	6.42730529458164	6.60186531402392	6.49658012519656	6.39588963661636	6.5704795712018	6.47635151255581	6.47979972666963	6.44121893784355	0.0279192974584532	0.894060481529856	0.960481560907683
Merged-chr4-106376065-2	chr4	106375965	106376165	+	879.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_183225, intron 24 of 67)	intron (NM_183225, intron 24 of 67)	59852.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	3.72383017252777	3.5260421180092	3.11113177018493	3.2394711261447	3.32439854228228	3.35946804698782	3.46662591182529	3.5818015671358	0.0652743416379252	0.905296425632805	0.964857060871205
Merged-chr6-13875161-4	chr6	13875082	13875282	+	966.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045995, intron 1 of 2)	MTE2a|LTR|ERVL-MaLR	3613.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	4.83669717784942	4.95736977883148	4.54140098734518	4.90839531156249	5.09124384632848	5.15269299834323	5.14285853886281	4.79593967881509	0.440802573664411	0.183053397329412	0.479931670936247
Merged-chr6-128379832-2	chr6	128379732	128379932	+	781.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_027697, exon 2 of 3)	exon (NM_027697, exon 2 of 3)	4322.0	NM_027697	71149.0	Mm.483176	NM_027697	ENSMUSG00000079304	Tex52	4933413G19Rik	testis expressed 52	protein-coding	3.17526700530406	3.07252035853957	3.34645764795437	3.60926747086866	2.99465473179288	3.08805045808737	3.16444070908447	3.44670872322478	-0.541341216472597	0.365744510195338	0.670406513516905
Merged-chr10-117307241-4	chr10	117307128	117307328	+	795.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14360.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	4.42174834019189	5.10600343900811	4.70592042123108	4.18830673684891	4.39791638584863	4.55421583922254	4.71863930524612	4.32598454987353	-0.310606296754135	0.464079672079291	0.745211298509957
Merged-chr3-146100167-3	chr3	146100065	146100265	+	775.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172864, intron 3 of 22)	MTEb|LTR|ERVL-MaLR	7871.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	3.96327831920531	3.82507003628912	4.08530446247714	4.30223067780255	3.00263535157268	3.21062130683446	3.23601079489057	3.31544793476089	-3.38885010133418	1.64308344101102e-07	6.74469643873836e-06
Merged-chr17-67343133-4	chr17	67343049	67343249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	11310.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	7.80162482474935	8.00522085983138	8.21142542978984	8.09960461940671	7.80409259170625	7.85784384848552	7.64276653644619	7.75807652599303	-0.352906686531343	0.0409904781065313	0.204748157273319
Merged-chr14-31128399-4	chr14	31128311	31128511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308091, intron 1 of 1)	intron (NM_001308091, intron 1 of 1)	519.0	NM_001308466	66487.0	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	5.2403781537698	5.54864309637404	5.35980183345994	5.30794922260557	5.11180140331822	5.14301797104044	5.15227982870517	5.17402928339424	-0.41259667005814	0.156800755677546	0.442893690014765
Merged-chr17-27911919-4	chr17	27911829	27912029	+	823.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	2623.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	3.99330356270608	3.95428780686431	4.03980952495885	4.12389499888556	3.80656712683042	3.96570474788631	3.66437596964269	3.94393672279663	-0.526753146126244	0.228595793163021	0.53744877323504
Merged-chr8-126596418-4	chr8	126596319	126596519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2983.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	8.66385766512487	8.74364344895664	8.76342909525365	8.6149891250305	8.63902536107281	8.76031069811113	8.76407618027524	8.85641667300461	0.0746219160918415	0.607894745299961	0.830283203337722
Merged-chr2-173538199-4	chr2	173538121	173538321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15629.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	5.19709498412039	5.19052597209832	5.10318166587986	4.85763051108989	4.99613418236554	5.17560010327203	5.11038651125488	5.19438874789091	0.071794512510529	0.817399531614261	0.929835729412061
Merged-chr4-132422142-4	chr4	132422077	132422277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161797, intron 1 of 12)	CpG	269.0	NM_001161797	100169.0	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	6.06350905526048	6.05493991587743	5.88800271659254	5.62918686610651	6.06833558498217	6.11021011828503	6.05385811712188	6.13996685802474	0.299691431594587	0.230211615702877	0.53944668798114
Merged-chr2-52573730-4	chr2	52573670	52573870	+	859.679199	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	-15159.0	NM_001285427	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	3.50209144686624	3.53604834078307	3.81876166886223	3.78994908673644	3.64777765132452	3.88922252905334	3.70644715674368	3.55878412885667	0.0814332582069333	0.865564764548335	0.949717980554339
Merged-chr2-52917032-3	chr2	52916939	52917139	+	589.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	MTC|LTR|ERVL-MaLR	59171.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.27465250938111	4.05125574939373	3.34032192431389	3.44934252823349	3.76128725396893	3.51778243227706	3.50534376457708	3.46032330247149	0.00171236704647185	0.997552517002602	0.999026234737431
Merged-chr12-91590995-4	chr12	91590903	91591103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175335)	promoter-TSS (NM_175335)	-516.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	6.76786518894862	6.59050484071653	6.68148226991216	6.72965951740306	6.77586102439651	6.79601243747964	6.7760576965762	6.59882404313221	0.0642681548587874	0.746982197237312	0.900337749845984
Merged-chr14-54254021-4	chr14	54253921	54254121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113358)	promoter-TSS (NM_001113358)	-92.0	NM_010015	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	8.97747902792127	9.06377044235878	8.92437055851215	8.74395112009689	8.92992976447194	8.97323700025429	8.97731021426049	8.79804719888822	-0.00855610192944263	0.954779944733732	0.983838959554429
Merged-chr4-9097182-4	chr4	9097076	9097276	+	945.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-172117.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	4.23916697145956	4.70516738245841	4.56760037961596	4.36527276356594	4.36430647497922	4.26906929871551	3.96725879682017	4.08922012235458	-0.698543921959481	0.0912402963769608	0.330096835052863
Merged-chr15-96633787-4	chr15	96633705	96633905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	MTD|LTR|ERVL-MaLR	8157.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	6.36620742310347	6.64652050052337	6.54069191943882	7.03493830641523	6.75732132455245	6.56283186434766	6.09093151549278	6.16204198443379	-0.368306711433828	0.174627282996459	0.469069910997419
Merged-chr13-55728096-3	chr13	55727995	55728195	+	802.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028281, intron 1 of 3)	intron (NM_028281, intron 1 of 3)	727.0	NM_028281	72562.0	Mm.28145	NM_028281	ENSMUSG00000021496	Pcbd2	2700061N24Rik|Dcoh2|Dcohm	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2	protein-coding	3.57095785452527	3.79635712415168	3.68110252013915	3.59190249845923	3.73747845196817	3.85082912336983	3.66640362062454	3.67904682422464	0.230035610134438	0.617342738832146	0.835475592876383
Merged-chr11-32568221-3	chr11	32568121	32568321	+	763.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	L1MB1|LINE|L1	34955.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	2.98625436829935	3.1928236798487	2.98664530631371	3.31129669918547	2.64473069148191	2.76111684469773	2.72180231669816	2.72820439490576	-2.08955883779244	0.0022223956618539	0.0253668859549549
Merged-chr6-31210537-2	chr6	31210437	31210637	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	B3|SINE|B2	7937.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	3.48070853395669	3.95504050021657	3.48116246502842	3.38403979170384	3.3939835841203	3.53747815810811	3.46802958586333	3.87805982947265	-0.0398596948512733	0.940229552494016	0.978487036039704
Merged-chr6-128837685-4	chr6	128837567	128837767	+	868.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-11352.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	3.43817164427571	3.4181921047935	3.60184959860277	3.35742919628997	3.59097347874803	3.36494004253077	3.53539701560633	3.78879790738543	0.431372430885038	0.386493771111195	0.687635667106349
Merged-chr6-97439150-4	chr6	97439050	97439250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	20136.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	6.82777301197049	6.70268235196273	6.97197460651574	7.24488735856824	6.77279803877128	6.62402194144178	6.72376616411871	6.67833016796694	-0.371941685873347	0.089035525366915	0.325572042138093
Merged-chr1-58711691-5	chr1	58711604	58711804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289704, intron 1 of 9)	CpG	213.0	NR_149256	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	5.1985316199518	5.62626580145224	5.56798244217787	4.91226099126852	5.39632256810331	5.23928779567071	4.84098296713549	5.63556503934064	-0.0665037475238014	0.851571445453736	0.944028765590514
Merged-chr18-82569051-4	chr18	82568956	82569156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025251, intron 2 of 6)	intron (NM_001025251, intron 2 of 6)	14548.0	NM_001025254	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	5.60858931222231	5.32373796292669	5.21158710465577	5.41577003601637	5.35286662734055	5.35451682241652	5.45383529227695	5.4502419262572	0.00607523636354091	0.982758868364802	0.993865312500427
Merged-chr19-40638743-4	chr19	40638641	40638841	+	975.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-21029.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	5.46529361748227	5.02778585038429	5.46624975843673	5.62909342818251	4.96833872523497	4.93542197736483	5.3307256958645	5.17110610875295	-0.581818959738544	0.0698334259386423	0.282826368414601
Merged-chr7-80919115-4	chr7	80919005	80919205	+	885.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019951, intron 4 of 5)	intron (NM_019951, intron 4 of 5)	-14043.0	NM_001291280	68039.0	Mm.22246	NM_026523	ENSMUSG00000025723	Nmb	3110023K12Rik	neuromedin B	protein-coding	4.47365279437515	4.35196834795405	4.16447795366711	4.45457563230854	4.25003566004064	4.23890856950304	4.60012697569551	4.30388105511741	-0.0446932329915236	0.908483298864955	0.966056631308673
Merged-chr17-56613439-4	chr17	56613371	56613571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018730)	promoter-TSS (NM_018730)	76.0	NM_018730	54217.0	Mm.11376	NM_018730	ENSMUSG00000057863	Rpl36	-	ribosomal protein L36	protein-coding	6.55346552728589	6.85159322452142	7.10294335042322	6.36494117631592	6.4706121654414	7.0146637985212	6.57020249628116	6.80679342548216	-0.0176426118754375	0.945046515676151	0.980260935841461
Merged-chr3-52268797-1	chr3	52268697	52268897	+	1000.0	f0_c57.idr	5' UTR (NM_019739, exon 1 of 3)	5' UTR (NM_019739, exon 1 of 3)	460.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	5.0947125652678	4.95590379279444	5.31215202088735	4.86896517770435	5.25155193050493	4.97325836226476	5.34070606875749	5.4429023176253	0.398272362023418	0.206856566247697	0.510854331029935
Merged-chr1-36572364-3	chr1	36572269	36572469	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-13988.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	4.31559441252698	3.97415680658501	4.27354018113294	4.22859043582419	4.27079701841883	4.26127247317511	4.1184690225507	4.39476019015495	0.152885718901252	0.700100439561399	0.879044875360757
Merged-chr14-118662836-1	chr14	118662736	118662936	+	668.0	f0_c57.idr	intron (NM_001033336, intron 3 of 30)	MTE2b|LTR|ERVL-MaLR	14095.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	4.07544324079338	4.24749058389975	4.35627993335438	4.24892296195343	4.26282672984576	4.39654481991785	4.45527605382386	4.31089490760356	0.283828617566275	0.458144941532714	0.741119194927503
Merged-chr4-101214226-4	chr4	101214140	101214340	+	856.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 1 of 24)	intron (NM_146145, intron 1 of 24)	51042.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	4.14722264412622	4.01974777322794	4.10206166464622	4.4242485193303	4.06008723917736	4.2261597123442	3.98872203571719	3.84302394030843	-0.420164827490388	0.329902086037165	0.64124355690967
Merged-chr7-79368880-4	chr7	79368788	79368988	+	738.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18139.0	NM_020599	19771.0	Mm.41653	NM_020599	ENSMUSG00000039194	Rlbp1	3110056M11Rik|CRALBP	retinaldehyde binding protein 1	protein-coding	3.82089660520821	3.77691977555499	4.11544636572842	3.98186506945607	4.03749990052198	4.09975813512895	3.75099693467508	4.27649368982681	0.326141315774015	0.461847610372161	0.743501704400988
Merged-chr2-46662061-3	chr2	46661963	46662163	+	813.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	965458.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	4.24146864223173	3.40291740227121	3.51764475176498	3.96191778760481	3.50070040893538	4.21176384054603	3.68351217524891	3.90399231673925	0.0705967162589797	0.898792147958929	0.962303043708153
Merged-chr3-61415423-4	chr3	61415299	61415499	+	969.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50892.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	4.06723936959184	4.55592468356447	4.39283764472813	4.09378775923418	4.67029634809502	4.48043743313136	4.24438880470411	3.77312812205986	0.119923519854999	0.795993362370939	0.921021739807616
Merged-chr13-60826228-4	chr13	60826138	60826338	+	725.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23394.0	NM_027344	70202.0	Mm.158337	NM_027344	ENSMUSG00000056728	Ctsll3	2310051M13Rik	cathepsin L-like 3	protein-coding	3.47410437974797	3.46196707343482	3.47453053880551	3.6448982802811	3.89097055887641	3.58973761631792	3.82231521803297	3.79092602357573	0.783860725851356	0.101352915580184	0.349327869353383
Merged-chr2-26445426-4	chr2	26445304	26445504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153125)	promoter-TSS (NM_153125)	-188.0	NM_153125	227648.0	Mm.206371	NM_153125	ENSMUSG00000026924	Sec16a	AU024582|C230052J16Rik	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding	8.78205834828105	9.16959257518789	8.71977330818925	8.4682513711974	8.95573804805843	9.19841540611142	8.98000287382705	8.80650767364568	0.229464918341797	0.230702974703286	0.540207357674242
Merged-chr5-90898676-4	chr5	90898544	90898744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5255.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	6.25880735071542	6.17731603283672	6.3153888642707	6.29986239145776	6.20001867555371	6.18714556411034	6.38653893917976	6.27419563150879	-0.00492812482953431	0.982148781687063	0.99359030804712
Merged-chr5-34525808-4	chr5	34525700	34525900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011893)	promoter-TSS (NM_011893)	16.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	6.9625232956003	6.53361788670872	6.88399125666373	7.18537386196755	7.14261043367908	6.99083478251504	7.25410050948021	7.06960777985804	0.268341229761029	0.221499330800277	0.52953443039545
Merged-chr5-137786822-4	chr5	137786718	137786918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144913)	promoter-TSS (NM_144913)	-117.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	8.31756807575475	8.36327293119259	7.67411572617846	7.47659435666454	8.24367493131891	8.54879497804745	7.96903390047968	7.86562081321462	0.220146885168389	0.385952226050572	0.687307818315077
Merged-chr16-58475036-4	chr16	58474930	58475130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 7 of 10)	intron (NM_001357433, intron 7 of 10)	48396.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	6.63491595845892	7.02225148671888	7.040059808197	6.85735619659762	6.40113086707077	6.8596431906444	6.77894763477291	6.54936314278328	-0.352020061272832	0.112852564307778	0.371420623567672
Merged-chr18-60932493-4	chr18	60932426	60932626	+	936.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177407, intron 1 of 17)	intron (NM_177407, intron 1 of 17)	6894.0	NM_177407	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	3.87726201411815	3.99941481691162	4.17322046104534	4.67898473829826	3.76265921065985	3.61777586547816	4.23849760091715	4.21377594183999	-0.638500627829437	0.212524394226505	0.517487068679264
Merged-chr6-134539636-4	chr6	134539496	134539696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	27317.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	6.27703610946238	6.02752285537398	6.09278860616665	6.21234267722474	5.97974470379194	5.67149643691548	5.39800535281384	6.08841986111082	-0.532688464808443	0.0489907670186125	0.228867081212017
Merged-chr15-101224653-2	chr15	101224553	101224753	+	805.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045326)	promoter-TSS (NR_045326)	124.0	NR_045327	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	3.08407922691216	2.93095241865437	3.37411768889634	3.00647580690371	3.20794660273025	3.43605218568102	3.25292092441153	3.31922073417514	0.764863198863295	0.170550219485163	0.463747304290085
Merged-chr2-156418571-4	chr2	156418475	156418675	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-2334.0	NM_001291122	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	3.97289556895667	3.82319807817764	4.49053831371556	4.54688088935024	3.69922898264908	4.09789905634399	4.23855302259901	4.2121559021548	-0.45430271953558	0.346909468860657	0.654996695461728
Merged-chr12-100924853-2	chr12	100924753	100924953	+	917.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026681, intron 25 of 29)	intron (NM_026681, intron 25 of 29)	-16655.0	NM_001177673	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	4.43811649745264	4.41447528562804	4.02190757232921	4.40025754755761	3.98105959142793	4.39760852927106	4.15836965029612	4.54912584841053	-0.126207987385569	0.763419996504281	0.907170333361858
Merged-chr4-129062904-3	chr4	129062782	129062982	+	946.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	4611.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	4.06313149641544	4.37289060213381	3.90601010911019	3.73937140574661	4.39103899994136	4.68507857346851	3.99618685686399	3.7875779700262	0.556790538236776	0.252934495524347	0.564182396569443
Merged-chr9-61056914-4	chr9	61056820	61057020	+	868.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39851.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	4.15694706617034	3.94645690137468	4.10945207260424	3.97580302709206	4.05833565361969	4.58220701181146	4.27233072315606	4.41072739220393	0.73250307633713	0.0740296066107965	0.293176672443019
Merged-chr6-134659481-4	chr6	134659347	134659547	+	818.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170479, intron 2 of 3)	RSINE1|SINE|B4	18507.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	3.50455469694099	3.32872790280503	3.55684249676362	3.52614632805003	3.46809692810466	3.56544048428717	3.3240838308708	3.33416164010105	-0.190608291728972	0.706722508040861	0.882215762445699
Merged-chr6-38761448-4	chr6	38761354	38761554	+	876.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	75857.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	4.28291253954033	4.40619324168192	4.37288244117102	4.60678339324391	4.3815882154947	4.41066175072318	4.43596655881261	4.23395356614381	-0.164625141107639	0.664932044594101	0.861125832432654
Merged-chr4-139493821-4	chr4	139493728	139493928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36720.0	NM_183148	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	7.58825721190685	7.7669754370844	7.67085965751208	7.22962653525785	7.12425921928135	7.16408495920173	7.20693697689005	7.15805201196886	-0.546994300498395	0.00624331696909602	0.0558844389516204
Merged-chr2-92066877-4	chr2	92066783	92066983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42713.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	5.4011324598744	6.11450015426422	5.34593677958735	4.16464583026961	5.50321917054815	5.60487641300362	4.41160318762502	4.68552737923858	-0.533633663706129	0.517514111338517	0.778934386631695
Merged-chr5-134552398-4	chr5	134552307	134552507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009990)	promoter-TSS (NM_009990)	27.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	7.24069329032054	7.51302110558955	6.96455693575592	7.02393812585272	7.3331508735054	7.4295763614129	7.36729768968243	7.02533038037271	0.131794124718396	0.535071007978009	0.789572503459381
Merged-chr5-86805632-3	chr5	86805522	86805722	+	571.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177680, intron 1 of 16)	B1_Mur4|SINE|Alu	1356.0	NM_001359907	231386.0	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	2.90689416382839	3.19739626662505	3.04035964966818	2.95158990211554	3.06987053741431	3.4885064913734	3.20713933224345	3.27258419080134	0.937993617377956	0.100022321158021	0.346947474381213
Merged-chr4-86948969-3	chr4	86948869	86949069	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	74555.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	5.04827225673969	5.13951151380198	4.96244774954245	5.39076326248141	3.9417679735449	3.84357494486606	3.69820289278634	3.63356050782732	-3.520237581263	2.94573920215751e-12	2.91214959264402e-10
Merged-chr7-100458336-4	chr7	100458248	100458448	+	939.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 31 of 32)	intron (NM_001017985, intron 31 of 32)	-14643.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	6.0147984263373	5.74407029990206	5.42269182921707	5.86087036988402	5.00757016742966	4.89331157502407	5.58320568944072	5.08893493999247	-1.07281803480104	0.000871802286891065	0.0120633777174609
Merged-chr4-149989232-4	chr4	149989138	149989338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291004, intron 3 of 4)	intron (NM_001291004, intron 3 of 4)	13998.0	NM_001291004	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	5.96081276116065	5.67963385200675	6.16540364397935	6.31472987222493	5.58681532433815	5.99843869835723	5.74223279158967	6.19796314337744	-0.265810314022617	0.35475248854647	0.661365305978239
Merged-chr16-24936051-4	chr16	24935938	24936138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-123601.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	5.96852476927557	5.94485267077469	5.68008707723052	6.27889754049475	5.81425116417962	5.62300155248926	5.96048056474049	6.08850638546195	-0.196814260772358	0.472830199812852	0.75087191094728
Merged-chr16-33180125-4	chr16	33179999	33180199	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4972.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	5.23493009903671	4.93845256557339	5.2952976927933	5.52026729567179	4.97612665038252	4.94388698079005	5.04908077672996	5.47976590552251	-0.275738187802131	0.409410433369622	0.705006053872415
Merged-chr4-100998347-4	chr4	100998240	100998440	+	714.233337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198037, intron 26 of 26)	intron (NM_198037, intron 26 of 26)	-70698.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	3.65657968358607	4.03720628798257	3.81438029601624	3.43277845067607	3.76630651078075	3.98469347317425	3.52784992297396	3.70954667653403	0.0272273143623236	0.956657604820655	0.984720649427078
Merged-chr6-6280995-3	chr6	6280927	6281127	+	969.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_136906, exon 3 of 3)	non-coding (NR_136906, exon 3 of 3)	32368.0	NR_136905	101056138.0	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	4.3843479686339	4.40048671812529	5.03617973218741	5.21065237272388	3.98956378386955	4.41850238369977	4.72871716113555	4.38229281998475	-0.91398273530451	0.0418286753587241	0.207204626860507
Merged-chr18-38403551-4	chr18	38403470	38403670	+	891.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-15337.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	4.80049433910853	4.41607275055207	4.69178577699523	5.21220169844664	4.40687424528758	4.47424166485309	4.59180606334595	4.68869062015442	-0.624801765163966	0.1114852823808	0.368917290310693
Merged-chr2-103485173-4	chr2	103485055	103485255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009804)	promoter-TSS (NM_009804)	-2.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	7.3339811089714	7.42784390349129	7.32494217948885	7.29402602171137	7.41246228913847	7.40541777453933	7.54810023440875	7.04344784908803	0.0307702507960481	0.871222981726853	0.951579960696581
Merged-chr6-29242429-2	chr6	29242329	29242529	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-26065.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	3.14434283746247	3.04015194245848	3.31900425150093	2.78359671309865	3.52616486721253	3.31927822210461	3.13338555116292	3.31708172899767	0.993879249133867	0.0897663635275716	0.327189946514957
Merged-chr17-36892477-4	chr17	36892365	36892565	+	729.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2340.0	NM_001172168	195359.0	Mm.32606	NM_001033235	ENSMUSG00000073399	Trim40	Gm319|Gm35|Gm865	tripartite motif-containing 40	protein-coding	4.13175292763122	3.71792225494867	3.40494769158391	4.08412631734291	3.81647875769504	3.65365669466094	3.80330685819368	3.96059878065506	-0.173983200106612	0.731400135564495	0.893601507910283
Merged-chr7-127478896-4	chr7	127478791	127478991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6330.0	NM_010183	14123.0	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	8.14688564908525	8.45589533429023	8.27266230110592	7.86173254486489	8.33452770482754	8.47831835258842	8.14636674513554	8.05909558570006	0.0875445327634694	0.652281442757517	0.854506217359982
Merged-chr3-107205333-4	chr3	107205227	107205427	+	979.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	16405.0	NM_001111143	229697.0	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	4.10998368085734	4.36676488565065	3.87396090488309	4.68862711008443	4.58589400812422	4.57560966748056	4.65291280299326	4.67239988112993	0.677195782116685	0.120619129706539	0.384502173558232
Merged-chr5-114620459-4	chr5	114620297	114620497	+	890.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38024.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	4.05510078115192	4.17806396342433	3.91112816030031	3.60282990914187	4.11349371994836	4.08441146918898	4.03769585384601	3.68761532473441	0.137449145383098	0.769468043984755	0.909742530773464
Merged-chr9-120118391-4	chr9	120118297	120118497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144793, intron 3 of 6)	Tigger7|DNA|TcMar-Tigger	7998.0	NM_144793	208638.0	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	6.00355991013136	6.35524277092447	5.86515230249343	5.91370931226944	5.97219292065738	5.88759870955625	6.21236863170013	6.3276230181516	0.0979734239046349	0.705663966601379	0.881790297238375
Merged-chr7-97332252-4	chr7	97332152	97332352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039039)	promoter-TSS (NM_001039039)	-71.0	NM_001039039	622320.0	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	8.21896866361949	8.23000306317361	8.18406966446382	8.33428786914165	8.35513182813684	8.43902140481069	8.56676217540196	8.04973404988268	0.152128934938586	0.373982938955174	0.677397508129094
Merged-chr5-125106428-3	chr5	125106357	125106557	+	967.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 5 of 46)	intron (NM_011424, intron 5 of 46)	72757.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	4.56558702080233	4.5118849246106	4.2450958041029	4.86787252334859	3.76236990778555	4.12006162152012	3.92250801100003	4.04602901540611	-1.58192270217778	0.000283575808765293	0.00484741654469375
Merged-chr14-46788346-4	chr14	46788223	46788423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009919)	promoter-TSS (NM_009919)	34.0	NM_001355011	12793.0	Mm.3261	NM_009919	ENSMUSG00000015759	Cnih1	0610007J15|CNIH-1|Cnih	cornichon family AMPA receptor auxiliary protein 1	protein-coding	7.11636922485913	6.91263937718533	7.1629600117263	7.24269355385361	6.85264848614531	7.09486989399988	7.21275675324885	6.97874756049603	-0.116409300140524	0.559662482418789	0.803980525375318
Merged-chr3-19694169-4	chr3	19694080	19694280	+	891.50415	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_205769, exon 2 of 2)	exon (NM_205769, exon 2 of 2)	1216.0	NM_205769	12918.0	Mm.290689	NM_205769	ENSMUSG00000049796	Crh	CRF|Gm1347	corticotropin releasing hormone	protein-coding	3.96370823282177	4.10576606795663	4.40492145060636	3.98825136682489	4.04504230396464	4.18976074470876	4.09529610569535	4.15661043949312	0.00367913589668835	0.992957116627793	0.997455796658417
Merged-chr18-6501448-3	chr18	6501374	6501574	+	921.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007935, intron 1 of 13)	B3|SINE|B2	-10617.0	NM_001276350	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	4.40422384003693	4.66238746040322	4.17298454077041	3.89928525927458	4.28182686516309	4.65856299957459	4.50488217858198	4.40209079832223	0.370345991799487	0.383614751619971	0.685494800932842
Merged-chr1-91074806-4	chr1	91074695	91074895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 3 of 22)	intron (NM_008515, intron 3 of 22)	21351.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	7.32018408483976	7.60178173233886	7.81153510572074	7.70912295853376	7.73521384007678	7.48822584034426	7.8310912726274	7.46032786341807	0.0201022640519981	0.917742169424118	0.969719335386341
Merged-chr11-97641962-3	chr11	97641891	97642091	+	602.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-12275.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	3.30699547127074	3.18512517336199	3.13833992774213	3.16617222070129	3.22748588278888	3.11981048562878	3.3448653894163	3.01110094933158	-0.0536270809780323	0.922688078597977	0.97138061478939
Merged-chr10-123075983-2	chr10	123075883	123076083	+	936.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153395, exon 1 of 34)	5' UTR (NM_153395, exon 1 of 34)	522.0	NM_001163024	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	4.53162620700353	4.30324565369871	4.93673328493738	4.95923857162829	4.62586062705902	4.31750702272512	4.8483873401426	4.80093356217463	-0.120551533822944	0.76144836947565	0.906546472680028
Merged-chr4-93598686-2	chr4	93598583	93598783	+	552.0	f0_balb.idr|f1_balb.idr	Intergenic	L1MEc|LINE|L1	-263172.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	3.03181021324872	3.03496958454718	3.53357142184321	3.13795813286511	3.00409048404424	2.86726842005219	2.89414790376286	2.90182854136336	-1.15854661868389	0.0635383205268366	0.267617718518883
Merged-chr11-82820909-4	chr11	82820824	82821024	+	926.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007465, intron 1 of 6)	intron (NM_001007465, intron 1 of 6)	8119.0	NM_026097	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	4.99715045505365	5.02558351915799	5.37547356192674	5.32997728248008	4.74637291157009	4.78535883151997	4.83166649032265	4.60191505945321	-0.908910069041386	0.00597599138805789	0.0540764163501872
Merged-chr5-139793626-4	chr5	139793529	139793729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010757, intron 1 of 2)	intron (NM_010757, intron 1 of 2)	2093.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	7.06759749736266	6.98910794745929	6.78294088813507	6.9343888023654	6.48598465046099	6.60864306280667	6.36039217914361	6.4801794885518	-0.661222907543699	0.00121546791868896	0.0157187120247749
Merged-chr1-74380559-4	chr1	74380459	74380659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013612, intron 6 of 14)	intron (NM_013612, intron 6 of 14)	5356.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	5.09499548476606	5.23277483667361	5.0598947161918	5.25156397336947	5.14570506323998	5.46689812757081	5.43560114949413	5.69986332663539	0.4877018577034	0.106903990445774	0.360562885516477
Merged-chr12-3823492-2	chr12	3823392	3823592	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	16332.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	5.03069819087104	4.2666562037374	4.53054703250273	4.79307834635739	4.39607129499988	4.70345426221985	4.28804559234605	4.68431808893138	-0.36395688156827	0.36668115654419	0.671068852337092
Merged-chr1-172334870-4	chr1	172334759	172334959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5537.0	NM_001360808	16524.0	Mm.261168	NM_008429	ENSMUSG00000038026	Kcnj9	1700085N21Rik|Girk3|Kir3.3|mbGIRK3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding	7.56784500241058	8.01591008793748	8.11904058350614	7.89675399378546	6.31080366237447	6.20505816665586	6.3213513518335	6.1675009647537	-2.29594283636053	9.98921091908387e-27	7.95671178537735e-24
Merged-chr15-64057163-4	chr15	64057082	64057282	+	999.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	2582.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	5.41055189060584	4.89781056181461	5.25140824299017	5.25711230952531	4.87508266924298	4.73083284085225	4.70866808972578	5.12840529372106	-0.665862447332483	0.0460059146386644	0.220189281741897
Merged-chr9-40765770-4	chr9	40765661	40765861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 2 of 6)	intron (NM_133733, intron 2 of 6)	-35512.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	6.03342933819499	6.08626541841533	6.11800913953384	6.21233902133062	6.06915239029884	5.84046963216048	6.04591605618942	6.30079993939282	-0.0704944792768709	0.768370733699442	0.909356419531329
Merged-chr6-127236715-4	chr6	127236571	127236771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71296.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	7.60189674355432	7.87828642540363	7.68114050488479	7.37408983823525	7.9456388019729	8.12246595986896	7.95340850825144	7.53382465744669	0.347199598811619	0.087537799712121	0.322623114301038
Merged-chr2-153357003-4	chr2	153356905	153357105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039939, intron 2 of 11)	intron (NM_001039939, intron 2 of 11)	10866.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	6.02037736534486	6.14857730226529	5.51003984862957	5.80650152055574	5.94584123926248	5.74596859848767	5.6232932440901	5.50620235070608	-0.272645087876078	0.33665492806202	0.646601494744927
Merged-chr1-171222031-2	chr1	171221929	171222129	+	882.724976	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001037170, exon 2 of 10)	5' UTR (NM_001037170, exon 2 of 10)	465.0	NM_001305585	11807.0	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	3.00717552710339	2.791612158327	2.68661143036494	2.5834751060241	2.86964273724916	3.06017740634668	2.99536788785282	2.94776711361266	0.904233316023772	0.146731058494562	0.427220370158867
Merged-chr4-149398438-3	chr4	149398336	149398536	+	947.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022022, intron 2 of 26)	intron (NM_022022, intron 2 of 26)	28195.0	NM_022022	63958.0	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	4.16607698802927	4.35999435875875	4.49558425711073	4.53499114416935	4.04127269622842	3.77965031841045	4.40016172725228	3.84797046145699	-0.904964055394073	0.0411397000104412	0.205191136363478
Merged-chr3-27194179-4	chr3	27194067	27194267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	L3|LINE|CR1	11163.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	6.80568642200846	7.15475602701034	7.07810988932828	7.30298288418404	7.2515779027799	7.19292414665993	7.16949677189371	7.51952809615613	0.244122638586378	0.235223185034887	0.545195411514106
Merged-chr11-119089298-4	chr11	119089177	119089377	+	793.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3040.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	3.87690896851018	4.20272222870556	3.72562160547735	3.34575901581371	3.72539411295921	3.79082023383375	3.59984138929819	3.82652679184821	-0.241316263802613	0.642628148913026	0.849309266102231
Merged-chr6-58770950-3	chr6	58770853	58771053	+	875.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60512.0	NM_001361967	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	3.54484133654207	3.59882499026378	3.70039741824663	3.49563425654102	3.58266543083394	3.54448725567495	3.58480704597729	3.5971769494589	-0.0073622750151696	0.987659265078096	0.995315979319888
Merged-chr12-73765314-3	chr12	73765205	73765405	+	822.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 12 of 13)	intron (NM_008856, intron 12 of 13)	-136019.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	3.96302155906337	4.32712913461505	3.96360180363681	4.08112683665958	3.73425084914504	3.87239440297533	3.84685775251649	3.91172549190839	-0.717612569980075	0.10319904501189	0.352873128956895
Merged-chr4-150545010-4	chr4	150544887	150545087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	107187.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	7.09124711053563	7.20736013260827	7.03422956661667	7.2064408231416	6.53788635144671	6.75749055166961	6.59574575833562	6.80819519047348	-0.659365514415717	0.00080738597929986	0.0113288659413688
Merged-chr5-122698822-4	chr5	122698731	122698931	+	898.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8713.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	5.0146146282695	5.12270451464225	5.10896465496647	5.4303306571679	4.63968641599801	4.53978816913396	4.28213607053172	4.80158549166709	-1.24955125200602	0.000467340700169008	0.00730613742528659
Merged-chr11-116493976-4	chr11	116493876	116494076	+	943.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3630.0	NM_026364	67763.0	Mm.25125	NM_026364	ENSMUSG00000015869	Prpsap1	5730409F23Rik|PAP39	phosphoribosyl pyrophosphate synthetase-associated protein 1	protein-coding	5.01255085252016	5.02750766550688	4.77898920986526	4.78512926118665	5.66088549592251	5.3230570151488	5.27377553764938	5.17718406922219	0.910357799945496	0.0035634273674309	0.0365635284108929
Merged-chr10-61336282-3	chr10	61336213	61336413	+	765.255554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 18 of 19)	intron (NM_013753, intron 18 of 19)	38477.0	NM_011073	18646.0	Mm.240313	NM_011073	ENSMUSG00000037202	Prf1	Pfn|Pfp|Prf-1	perforin 1 (pore forming protein)	protein-coding	3.98258202916545	3.96489179082628	3.50668338457789	3.43286674122668	3.81817929933581	3.8606313404268	3.67094179084299	4.02410651049827	0.322774407221862	0.515025927729333	0.777349615340575
Merged-chr8-94381394-3	chr8	94381293	94381493	+	696.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-5036.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	3.27315233453647	3.48965018862707	3.49596539083818	3.34637545726362	3.2273659861456	3.25719659590825	3.57823100261295	3.27193639837576	-0.222638361987027	0.674127095760074	0.866008871206355
Merged-chr11-51677938-4	chr11	51677845	51678045	+	969.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	10689.0	NM_025319	66050.0	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	4.66812613737111	5.19109567576493	4.89715738929973	4.58364066430725	4.80316745704047	4.84497473582195	4.80252219962318	4.89385277165346	-0.0255118349414161	0.942232129573726	0.979062797089676
Merged-chr14-56811151-4	chr14	56811012	56811212	+	956.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152252)	promoter-TSS (NR_152252)	352.0	NM_001253753	219105.0	Mm.473172	NM_144842	ENSMUSG00000040123	Zmym5	9830124H08Rik	zinc finger, MYM-type 5	protein-coding	4.19704735252084	4.58677689905938	4.28756245391169	4.28016611829912	4.2834590490187	4.06424986673058	4.03349076177534	4.28488146674678	-0.415422535675731	0.306045251200077	0.61854718993612
Merged-chr8-121927509-4	chr8	121927413	121927613	+	847.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007608, intron 2 of 6)	intron (NM_007608, intron 2 of 6)	17399.0	NM_007608	12352.0	Mm.116761	NM_007608	ENSMUSG00000025317	Car5a	CAV|Ca5a|Car5	carbonic anhydrase 5a, mitochondrial	protein-coding	3.91025825806851	3.96757227854981	4.00760479007709	3.879402742199	4.08836794676729	3.81086745693189	3.94345822347353	4.05082123835516	0.129546502938993	0.76069280394388	0.906304556047092
Merged-chr10-118042845-3	chr10	118042744	118042944	+	943.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-98943.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	4.66643199443521	4.41417508488453	4.93985423777407	5.1573530739877	3.52031644837859	3.70034050346398	3.70170586440033	3.71356175985442	-3.34510442709657	1.50907994944931e-10	1.12476232169479e-08
Merged-chr9-61368560-4	chr9	61368470	61368670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3796.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	5.6320583229802	6.12495483518669	5.84833450162373	4.96474960269207	5.86498463689648	5.90801677441041	5.14173924019029	5.46229579262708	-0.118862181995289	0.747805535029846	0.90068822490119
Merged-chr13-54580428-2	chr13	54580328	54580528	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019968, intron 3 of 3)	intron (NM_019968, intron 3 of 3)	5415.0	NM_019968	56795.0	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	2.09686956436771	1.97588530533169	2.09707830183229	1.8505106131128	2.31620828932609	2.34380149238096	2.29477245513671	2.30273593927645	2.29496780858769	0.00483383489747093	0.0463577922618005
Merged-chr1-55053229-4	chr1	55053138	55053338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026424, intron 1 of 3)	CpG	468.0	NM_001039710	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	7.16496538749787	7.89743657813115	7.63348921935721	7.4658926821814	7.65335358785212	7.72304619607071	7.80566256805573	7.47517694072033	0.133427548523962	0.522593377380597	0.781990067507927
Merged-chr11-69662312-1	chr11	69662212	69662412	+	1000.0	f0_c57.idr	promoter-TSS (NR_035455)	promoter-TSS (NR_035455)	337.0	NR_125917	24070.0	Mm.89579	NM_011900	ENSMUSG00000018761	Mpdu1	LEC35|SL15|Supl15h	mannose-P-dolichol utilization defect 1	protein-coding	5.82786350471033	6.15311760821141	5.7222157105405	5.83808317997125	6.47262655461076	6.57103268029068	5.9880249537337	6.27278379302874	0.693132564942572	0.00694787548303451	0.0605908881410087
Merged-chr14-51164536-4	chr14	51164431	51164631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2271.0	NM_019398	54159.0	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	5.86488956291953	6.39158192668796	6.23268351010653	5.81207835929894	6.3734437712657	6.13923259339407	6.30771634638771	5.95798731253385	0.186901713820728	0.481423250290605	0.756601212877503
Merged-chr19-8819432-4	chr19	8819352	8819552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081196)	promoter-TSS (NM_001081196)	51.0	NM_001081196	68693.0	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	7.72724630199884	7.84442920202339	7.82928547531489	7.30333695646375	7.90765167593049	7.98410175927203	7.73826060164815	7.69059298689111	0.200400000124218	0.311638736216981	0.623654228665894
Merged-chr5-24453038-4	chr5	24452957	24453157	+	826.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359881, intron 1 of 15)	intron (NM_001359881, intron 1 of 15)	880.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	3.81561032972849	3.52310438704032	3.76183358194878	3.93797340641146	3.96115411184028	3.99034390256229	3.80066006487351	4.3655664086874	0.732973313863971	0.119304351833757	0.382176618324707
Merged-chr11-97793370-4	chr11	97793262	97793462	+	853.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6203.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	4.42344482072102	4.35701798007463	4.08199263572911	3.73264774531755	4.13291500686761	3.93366152108299	4.15791483644261	4.34404198722858	-0.0380860285765695	0.933323635910536	0.975967471696899
Merged-chr1-36001098-4	chr1	36000974	36001174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-67326.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	5.42418761481359	5.74361193567616	6.21567907528486	5.91435861583867	5.88320436377606	5.50629085722147	6.07626723272708	5.70869112883646	-0.0684435994549891	0.816843165937211	0.929559373732889
Merged-chr4-47314125-4	chr4	47314044	47314244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009928)	TTS (NM_009928)	-39078.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	7.12826800770473	7.55157776682355	7.17601461457019	7.05203842320565	7.55243636177485	7.40879614659006	7.17367185527248	6.87666966176464	0.0604908416995988	0.790668517970518	0.918840742585233
Merged-chr10-70201744-4	chr10	70201614	70201814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2950.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	4.99590157976168	5.03136670696049	5.15968412892307	4.75506064285205	5.01216242653894	4.86370962834245	4.93760337383806	5.45346773758682	0.208473313642507	0.536029759077459	0.79016821068994
Merged-chr2-151973485-4	chr2	151973382	151973582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289151)	promoter-TSS (NM_001289151)	-88.0	NM_001289151	73847.0	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	5.49767265465047	5.26661468545559	5.35850322753844	5.39629760856872	5.05645937100933	5.23854273509301	5.77316986264372	5.41264048427719	0.0167481621289962	0.956876219324671	0.984757116793997
Merged-chr17-34005644-4	chr17	34005530	34005730	+	790.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV-int|LTR|ERVK	-5283.0	NM_001347346	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	3.86328557593146	3.96255058780383	4.01089698910488	3.17592235403686	4.13767717947629	3.8782668662699	3.89776391230834	4.18111132480988	0.668559131214058	0.200250573092427	0.502259964838292
Merged-chr2-71327961-4	chr2	71327887	71328087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 4 of 17)	intron (NM_172436, intron 4 of 17)	39567.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	6.22990123309095	6.24514508110649	6.23100181218413	6.28330725606308	6.42276661042169	6.19690129631142	6.53696637377872	6.16671280734057	0.143479644170296	0.524228012043562	0.782789831107843
Merged-chr14-57399039-4	chr14	57398952	57399152	+	982.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030004)	promoter-TSS (NM_030004)	-569.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	5.42350773476158	4.98470010668425	5.47649866495155	5.22604637661498	5.12800952050196	5.39680644319527	5.19729912996645	4.90310121962397	-0.219758789897672	0.487091762138832	0.760577292750831
Merged-chr7-19635560-3	chr7	19635481	19635681	+	956.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019649, intron 10 of 13)	intron (NM_019649, intron 10 of 13)	-6143.0	NM_009046	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	3.86759966905945	4.80967801969877	3.92608177810635	3.38188880147697	4.31847983829346	4.64698838483017	4.21008224457263	4.08398261522618	0.504910885619076	0.359877241543425	0.665567650786485
Merged-chr8-94634250-4	chr8	94634146	94634346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359093, intron 6 of 14)	intron (NM_001359093, intron 6 of 14)	32305.0	NM_026274	67610.0	Mm.109074	NM_026274	ENSMUSG00000050079	Rspry1	4930470D19Rik|AI608258	ring finger and SPRY domain containing 1	protein-coding	5.57023927325606	5.53662270344041	6.03486035055471	6.46559797195241	5.48332336868883	5.46010381278302	6.10142669293918	6.30440871343165	-0.132775162255956	0.709066022154562	0.88326595109779
Merged-chr15-95792479-4	chr15	95792383	95792583	+	879.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	1640.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	3.5485702340819	3.67135576499066	4.00371352210489	3.75810385209499	3.74643637708666	3.72611687213946	3.47523424119316	4.08312529250703	0.060963768528714	0.90144301982022	0.963377215857896
Merged-chr16-93607869-4	chr16	93607785	93607985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007620)	promoter-TSS (NM_007620)	48.0	NM_007620	12408.0	Mm.26940	NM_007620	ENSMUSG00000051483	Cbr1	AW261796|CR|Cbr	carbonyl reductase 1	protein-coding	5.6836497476473	6.05574296592065	5.90101374587086	5.94923917953331	5.88081433910027	5.60307980634378	5.7799004846942	5.57129821898843	-0.301770791071819	0.246249748835048	0.55750034581202
Merged-chr19-17166609-4	chr19	17166549	17166749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 9 of 19)	ORR1F|LTR|ERVL-MaLR	172856.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	6.94638669636025	7.19349936370443	7.39911361590477	7.26829508737225	7.03292849360745	7.11149536981661	6.72786135954022	6.98183425364487	-0.33371109521666	0.101288814845254	0.349273541514549
Merged-chr9-65364366-3	chr9	65364265	65364465	+	970.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111145, intron 1 of 6)	intron (NM_001111145, intron 1 of 6)	3305.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	3.96823761974815	4.402001429463	4.65411854633155	4.47281659542299	3.48074515663984	3.7495623659385	3.5476582818768	3.48890715163936	-2.48503309740189	1.2180205674622e-06	4.19639331904124e-05
Merged-chr5-136170214-4	chr5	136170121	136170321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178751, intron 1 of 2)	intron (NM_178751, intron 1 of 2)	435.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	6.30284689444947	6.46688741999521	6.48686871159381	6.13498195983137	6.1915274149769	6.17889391045258	5.90144464767602	5.77456455833287	-0.483196234873962	0.0530889987941286	0.24029135477345
Merged-chr17-48557996-4	chr17	48557896	48558096	+	790.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103095.0	NM_152823	76589.0	Mm.311629	NM_152823	ENSMUSG00000043592	Unc5cl	2510009H09Rik|BB155270|Zud	unc-5 family C-terminal like	protein-coding	4.59696719028783	5.08803196403394	4.33628442846279	4.44557598597907	4.68605501022915	4.60503117579932	4.31754701827282	4.42663223368594	-0.27860668892888	0.490297071298497	0.762174753407996
Merged-chr11-26639675-4	chr11	26639587	26639787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-45767.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	6.6559987148793	6.15124707313525	6.33781088530307	5.6671976180798	6.69313302798703	6.58440521267743	6.53588812180522	5.97922369784772	0.359113683463971	0.230316283151225	0.539674185022254
Merged-chr17-5402862-4	chr17	5402746	5402946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15921.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	5.01835809786754	5.05958549303713	4.98314265547172	5.0534655197633	5.14217155561056	5.41849565941214	5.06364597022542	5.38316534844782	0.4164609986912	0.166995978701273	0.45848209395888
Merged-chr18-46958996-4	chr18	46958909	46959109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178377, intron 1 of 6)	CpG	133.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	7.74150857878291	7.87448883162777	8.83190053974013	7.83724982391399	7.4666877021633	7.63157173288612	7.46591203973803	7.65399116026901	-0.775992768162213	0.00271784714353079	0.0295665049410634
Merged-chr2-166744658-4	chr2	166744561	166744761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30829.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	5.02120404048843	4.91111715011378	4.76735855355253	4.94795979959454	5.05375763029979	4.98267164121908	4.52908827189486	5.3367415407023	0.180657906973208	0.603968688928249	0.828350269166784
Merged-chr6-140609759-4	chr6	140609645	140609845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14_RN|LTR|ERV1	-12918.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	5.64063571074646	5.20309457761592	5.39572768135019	5.68445806292858	5.64436213328207	5.44653287425917	5.68489410210665	5.47927934047886	0.111012812627638	0.698352086182565	0.878310860365559
Merged-chr5-139024659-4	chr5	139024558	139024758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359099, intron 9 of 10)	intron (NM_001359099, intron 9 of 10)	-29705.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	7.6378200548167	7.81096326432784	8.02561796623109	7.90543456638658	7.7581055438422	7.91673373035375	7.61915477817971	7.70985266012203	-0.131376013018993	0.455861891110317	0.739247569027891
Merged-chr17-73970557-4	chr17	73970477	73970677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20381.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	6.66297555663072	6.34862578380516	6.7660806397763	7.11076705447631	6.34447986399083	6.39275316620966	6.86360726431769	6.78890645656586	-0.213954780098096	0.41132931564725	0.706737378001197
Merged-chr7-112180340-4	chr7	112180230	112180430	+	726.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20848.0	NM_001360257	50781.0	Mm.55143	NM_015814	ENSMUSG00000030772	Dkk3	AW061014|C87148|dkk-3|mDkk-3	dickkopf WNT signaling pathway inhibitor 3	protein-coding	3.85924222946779	3.71367450214432	3.69880280768555	4.06927787014678	3.85352856113828	3.92800414608295	4.0712945721313	3.85757082428241	0.189559735732952	0.676820546485291	0.867294132510235
Merged-chr19-43815965-7	chr19	43815798	43815998	+	910.003967	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013806, intron 16 of 31)	PB1D11|SINE|Alu	-22905.0	NR_033472	100038628.0	Mm.212585	NR_033472	ENSMUSG00000025194	Gm10768	-	predicted gene 10768	ncRNA	3.16400177703762	2.83516234046588	2.91790806869653	2.91616293421074	3.20181008415647	3.15744437946429	3.09529473772126	3.27007121161599	0.904618265405698	0.11153422052914	0.369056876001799
Merged-chr10-88503630-2	chr10	88503530	88503730	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001146690, exon 1 of 9)	exon (NM_001146690, exon 1 of 9)	340.0	NR_027477	212862.0	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	4.13701966370766	4.66511966368276	4.82365365842749	4.60180739360663	4.38955258206951	4.42612956639826	4.80001790359661	4.78676353403661	0.0635357219970114	0.871925566302228	0.95183223179801
Merged-chr4-88727438-4	chr4	88727344	88727544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4936.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	5.75611681402519	5.59540273816604	6.18523930946712	6.04777211882636	5.74786386993502	5.54086593860281	5.45989684182818	5.54208960440262	-0.554610156289255	0.0484683968951256	0.2272532786113
Merged-chr4-155235865-2	chr4	155235765	155235965	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13330.0	NM_001357191	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	4.12538740879102	4.01542305438749	3.52364222511485	3.51504722945811	3.75372402425765	3.93075340298967	3.68767491510075	3.90574345127563	0.0131762791146927	0.978851048090788	0.992516114931184
Merged-chr19-9062896-2	chr19	9062796	9062996	+	906.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286518, intron 6 of 6)	intron (NM_001286518, intron 6 of 6)	25060.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	3.56542955065297	3.01300059988052	3.18685644712104	2.66517858236042	3.04909391527766	2.75945281933194	2.86745334155591	3.06963667029034	-0.822094522983307	0.231950697990201	0.541542911150474
Merged-chr10-96738177-4	chr10	96738070	96738270	+	915.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121169.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	4.50280541558413	4.75281689428982	4.22525304015632	4.88353720318729	4.50212075491014	4.35286142353299	4.6012628680843	4.50065242724824	-0.311955844651883	0.42437204931949	0.716123917662497
Merged-chr4-80311302-4	chr4	80311199	80311399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-522914.0	NM_031202	22178.0	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	7.36694705327746	6.96072708634273	7.15839315537422	7.23865903392227	7.03434513276103	7.04157143812077	7.47678962106184	7.13032896717506	-0.01087169457922	0.957941592857776	0.984986374576903
Merged-chr11-72205632-4	chr11	72205557	72205757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155065, intron 1 of 19)	intron (NR_155065, intron 1 of 19)	1825.0	NR_155065	74477.0	Mm.289697	NM_028963	ENSMUSG00000020807	4933427D14Rik	C85113|Kiaa0753|MNR	RIKEN cDNA 4933427D14 gene	protein-coding	5.32767098908562	5.89311772650313	5.19199856865203	5.6329938217684	5.76724658068771	5.59865274953032	5.66390992294185	5.58750531824368	0.181616170873149	0.537407372890251	0.79105218369913
Merged-chr16-31837626-4	chr16	31837530	31837730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 12 of 22)	intron (NM_001357281, intron 12 of 22)	-41180.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	5.8224879841154	5.48509702517842	5.25449607022527	5.42523263483482	5.76055494550833	5.59096595482489	5.60717105741134	5.58004098787738	0.232147309606729	0.405907448268017	0.702456276834042
Merged-chr7-45526296-4	chr7	45526198	45526398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148927)	promoter-TSS (NM_148927)	-30.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	8.27379457014185	8.68182107811383	8.53411716926082	8.0868439372945	8.51834613200968	8.85203928958373	8.59536713027989	8.41374720932304	0.243635615045629	0.207001634708424	0.511049184276
Merged-chr14-101943149-2	chr14	101943049	101943249	+	812.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102526.0	NM_001347628	380928.0	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	3.14903670243708	3.03898569325526	3.41655480322238	3.06049053504579	2.98547249113524	2.84435753781101	2.94894509593545	3.55087300740123	-0.223672684790172	0.724216017891167	0.890108631350396
Merged-chr13-69528606-2	chr13	69528534	69528734	+	671.5	f0_balb.idr|f1_balb.idr	intron (NM_198600, intron 1 of 12)	intron (NM_198600, intron 1 of 12)	5230.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	3.00398566211866	2.95909722896169	3.11923673986805	3.29893771680891	3.01100303893349	2.9149909659787	2.93321543760527	2.87695158200465	-0.73644288455833	0.223051548843104	0.531132387537557
Merged-chr10-12868295-4	chr10	12868200	12868400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6565.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	5.76615331602089	5.8152030695715	5.96836433695564	5.75844975747875	5.68680622182455	5.48542413101826	5.68880762147925	5.90059770590263	-0.203391736907564	0.431568129787151	0.721710551668303
Merged-chr15-36727896-7	chr15	36727753	36727953	+	931.261902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	63079.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	4.31836047950944	4.46138503072556	4.27312222474263	4.36561220142461	4.02414777868453	4.35314622269318	4.54269779070036	4.66807857497889	0.123158412185786	0.759593450374588	0.905741537670396
Merged-chr18-46859680-3	chr18	46859578	46859778	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029008, intron 1 of 19)	intron (NM_029008, intron 1 of 19)	9639.0	NM_029008	74574.0	Mm.26379	NM_029008	ENSMUSG00000024481	Lvrn	4833403I15Rik|APQ|Aqpep	laeverin	protein-coding	5.52174788375089	5.46076152360756	4.83794486048073	4.96020002895169	3.60407675798697	3.74756391292917	3.67650549357571	3.76211191869113	-4.28370654964731	1.00233568158249e-13	1.31633305312472e-11
Merged-chr19-36932814-4	chr19	36932718	36932918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080706, intron 1 of 37)	intron (NM_001080706, intron 1 of 37)	6739.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	6.17690831600459	6.51223495107052	6.45457177096554	6.79576186726363	6.85723030816767	6.42150008225881	7.14056462924026	6.60032491537611	0.385048346428681	0.134434238286664	0.4081057574053
Merged-chr11-116130619-4	chr11	116130515	116130715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178802, exon 1 of 6)	exon (NM_178802, exon 1 of 6)	513.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	6.47929311058409	6.31202163352282	5.6876686447308	6.01027388587154	6.15861039089824	6.41749689420147	6.19167871492807	6.03543903609212	0.0819501093653678	0.760248069237354	0.90597557094845
Merged-chr7-90034108-4	chr7	90033992	90034192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	4933.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	7.64596891926273	7.38575256097254	7.36705976584407	8.04162452261153	7.46081154464736	7.43575082827696	7.54119516148913	7.84249217764764	-0.0974715852493341	0.66156202263241	0.859452900113265
Merged-chr5-20265561-2	chr5	20265461	20265661	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 6 of 22)	intron (NM_001170746, intron 6 of 22)	358043.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	2.9691295586429	2.88412989498055	3.21739851070014	3.06981701374614	3.13158391594766	3.14695394030595	3.58590396129187	3.0976745850293	0.819097890240087	0.161311100105094	0.450029320380696
Merged-chr1-147054741-3	chr1	147054636	147054836	+	845.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	557049.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	3.11782270847713	3.01664266451719	3.11820458318196	3.473477355529	2.86216555664764	3.16562457927552	3.42496428753501	3.11666013072438	-0.185598338249264	0.762783754654711	0.907011913026374
Merged-chr18-82872323-3	chr18	82872237	82872437	+	693.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16440.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	3.30136445541742	3.0823894913697	3.19109630480364	3.37158453345491	3.19205874249082	3.04397829690108	3.38884096122232	2.86353942010195	-0.407332084952424	0.493330666902481	0.76412898854184
Merged-chr6-24663652-3	chr6	24663493	24663693	+	800.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028459, intron 1 of 10)	intron (NM_028459, intron 1 of 10)	1402.0	NM_001167745	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	3.30615294074684	3.18151855966848	3.25146695267478	3.09918712617051	2.91345936706601	3.30676882697893	2.99476427907129	3.40814770124756	-0.153571073216488	0.791673703896776	0.919252187122779
Merged-chr10-51414746-4	chr10	51414655	51414855	+	969.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65857.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	4.60787536703277	4.57334951465955	4.74081487095239	4.62568745560352	5.43751444730592	5.21386293351158	5.47878059014183	5.1322959664693	1.34399629330804	1.82879896066556e-05	0.000470614899570549
Merged-chr11-9373326-4	chr11	9373240	9373440	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178259, exon 30 of 62)	exon (NM_178259, exon 30 of 62)	181398.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	5.28720362464875	4.72596192481766	5.3181591509261	5.48144520315765	5.3363879660178	5.46211247683225	5.50764676747463	5.18989474039368	0.238946135143543	0.464519022171391	0.74546949672923
Merged-chr1-93635136-6	chr1	93635007	93635207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021537, intron 2 of 11)	CpG	620.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	4.46655526673861	4.73434072458006	5.02124241053479	4.61399430861243	4.70457530735758	4.5514882998366	4.93553994417779	4.63701159868168	-0.00301161704038132	0.993335237026217	0.997671773391494
Merged-chr4-19850820-3	chr4	19850614	19850814	+	833.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	31987.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	2.69471104879136	2.66605210243842	2.69502622439587	2.63707978776334	2.52638562024016	2.92751054067056	2.74840972293433	2.75707071523826	0.343042757926162	0.594841044936825	0.823614837620898
Merged-chr4-117928962-2	chr4	117928864	117929064	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001284193, intron 2 of 4)	intron (NM_001284193, intron 2 of 4)	799.0	NM_001284191	11876.0	Mm.56897	NM_009711	ENSMUSG00000028539	Artn	neublastin	artemin	protein-coding	2.9083694148376	2.76616518942279	3.09792549499234	3.03014311331258	3.04229786698007	3.26747831770093	3.14284545448352	3.20848157847306	0.818799223790852	0.160549902065396	0.448729001418025
Merged-chr13-110684623-4	chr13	110684522	110684722	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-218877.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	5.11184306382399	5.03317467844395	5.30415625493616	5.33133575753863	5.44109194465959	5.0268031188648	5.46824455324587	5.35829849853512	0.239730688131515	0.428068839251949	0.719151653480075
Merged-chr18-12955793-4	chr18	12955728	12955928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13987.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	5.65310619643513	5.63480696630534	5.77907106085002	5.81109392458636	5.52241992121248	5.80304809637064	5.70153184788757	5.93125777975609	0.0169558579180441	0.948471577956969	0.981468586232336
Merged-chr5-65107451-4	chr5	65107385	65107585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347355)	promoter-TSS (NM_001347355)	-83.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	7.00585082181808	7.18866857808478	6.94242215480307	6.73159670454875	7.32457551049304	7.32631064726513	6.95907045848919	7.03935798584632	0.286143437047921	0.175224946571046	0.469912833953675
Merged-chr5-25089752-3	chr5	25089659	25089859	+	582.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 1 of 15)	intron (NM_145401, intron 1 of 15)	10883.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	3.27062859468524	3.18742041442017	3.27111102936398	3.17238690415318	2.87631215903142	2.95730864136064	2.84218513600475	2.98341892373022	-1.3387380602459	0.025445078202579	0.150315812215235
Merged-chr17-44734708-3	chr17	44734587	44734787	+	660.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073392, intron 2 of 7)	CpG	1489.0	NR_073425	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	3.42286403340283	3.71553547112278	4.00405839525378	3.85036650030204	3.13474555262608	3.40978431056365	3.58046117776923	3.48123080613757	-1.19753320088889	0.0274009623720077	0.157816177426445
Merged-chr17-78891227-4	chr17	78891140	78891340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163625, intron 4 of 6)	MTE2a|LTR|ERVL-MaLR	-8668.0	NM_011163	19106.0	Mm.378990	NM_011163	ENSMUSG00000024079	Eif2ak2	2310047A08Rik|4732414G15Rik|AI467567|AI747578|Pkr|Prkr|Tik	eukaryotic translation initiation factor 2-alpha kinase 2	protein-coding	6.00277370600562	5.55866037235066	6.80086020239877	6.42514529487552	7.24292301017012	7.47328086451852	7.11912678316849	7.54052180539837	1.50212458786314	3.61468000348953e-07	1.37808949099294e-05
Merged-chr14-45047471-5	chr14	45047352	45047552	+	866.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	59341.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	3.66397234769923	3.42970175506206	3.81551138759895	3.38934781940803	4.07450518064087	3.54746928229547	3.7509915137004	3.71466040653767	0.67466641613272	0.176886858308797	0.472125007033219
Merged-chr15-57926144-4	chr15	57926020	57926220	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356310, intron 3 of 19)	RSINE1|SINE|B4	13921.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	4.8089820978723	5.01851550509698	4.95651867487654	4.7550603955849	5.05532523647879	4.90623534840204	5.06304436161121	5.02058791105026	0.270280115547301	0.391532945170124	0.691279263407274
Merged-chr19-41774617-1	chr19	41774517	41774717	+	1000.0	f0_c57.idr	intron (NM_027667, intron 9 of 11)	intron (NM_027667, intron 9 of 11)	27467.0	NM_001163495	71085.0	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	5.48420512306321	4.81783833760302	4.96247704649612	4.97268267482269	5.96619054286517	5.89604164223766	5.92832875655708	6.20462636384793	1.58784934802299	5.17128943146785e-08	2.35802184780558e-06
Merged-chr6-128843788-4	chr6	128843662	128843862	+	999.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17447.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	5.20253598643615	5.07028848449991	5.07850839687504	4.95656696939227	5.13413940643055	5.25120361848633	4.8027120592777	4.93661771099021	-0.0486597861392683	0.877948753992968	0.954314763971155
Merged-chr14-55879803-4	chr14	55879708	55879908	+	904.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019820, exon 3 of 3)	3' UTR (NM_019820, exon 3 of 3)	4448.0	NM_019820	56410.0	Mm.97163	NM_019820	ENSMUSG00000040380	Cbln3	-	cerebellin 3 precursor protein	protein-coding	4.29229431397945	4.16118489533023	4.24543308231354	4.32931052784407	4.67255706728927	4.51255495299066	4.76510693889263	4.29032202867505	0.720774825784723	0.0571112027244277	0.25044999472715
Merged-chr6-100143947-4	chr6	100143858	100144058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143400.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	5.58591025753961	5.8572522885624	5.7123242540752	5.60447007740939	5.51708622743834	5.65205601912269	5.29791888537605	5.3523886389972	-0.389591517020846	0.155578733373061	0.441227933013032
Merged-chr6-59209439-4	chr6	59209357	59209557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081145, exon 2 of 2)	5' UTR (NM_001081145, exon 2 of 2)	587.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	5.57112052348873	5.47399559693521	5.4328664192326	5.40392577422046	5.79111088650877	5.57873344396317	5.54404463984098	5.51435640352331	0.267520016099718	0.318205024965673	0.630071136298021
Merged-chr16-24778577-4	chr16	24778477	24778677	+	768.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 8 of 12)	intron (NM_178665, intron 8 of 12)	56722.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	3.60444474343749	3.65631310521459	3.36414836876035	3.71642387257142	3.88282367948421	3.66470230828913	3.53554086733664	3.89604524226179	0.474876945846333	0.332424049597703	0.643468166711489
Merged-chr13-113500781-4	chr13	113500681	113500881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	ORR1F|LTR|ERVL-MaLR	2063.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	6.19459653643985	6.48472466469001	6.5455349489527	6.73108502642591	6.4271587597591	5.77204108991391	6.24172010627445	6.01887159518398	-0.542090938070783	0.0386610615360189	0.197334107699754
Merged-chr13-100104043-4	chr13	100103917	100104117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081061)	promoter-TSS (NM_001081061)	53.0	NM_001081061	544971.0	Mm.288546	NM_001081061	ENSMUSG00000049658	Bdp1	AI662220|AW049390|AW456745|B130055N23Rik|G630013P12Rik|TAF3B1|TFC5|TFIIIB150|TFIIIB90|Tfnr|mKIAA1241	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	protein-coding	6.32875009763593	6.49836534175997	5.85511100267375	6.03603845021794	6.16768911281671	6.00798194538771	5.72181980786104	6.23635153025732	-0.228265681612528	0.399987559293712	0.698016583884129
Merged-chr7-80857376-4	chr7	80857283	80857483	+	864.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4725.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	4.29443715063712	4.56948136503901	3.8885633832664	4.03509779509729	4.45168051650056	4.23315921363789	4.43767321228682	4.20209692404494	0.293583925831294	0.489478010972246	0.761790645218583
Merged-chr6-38636891-8	chr6	38636929	38637129	+	839.1726070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033171, exon 1 of 5)	exon (NM_001033171, exon 1 of 5)	210.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	3.67531593500719	3.73533164810178	4.06659519184079	3.81784318709397	3.72415742482957	4.0070329244327	3.82085920713884	3.93173637232717	0.112920483001489	0.802819719984717	0.923936032101707
Merged-chr14-31664353-3	chr14	31664258	31664458	+	660.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025295, intron 2 of 3)	LTR37B|LTR|ERV1	23301.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	3.74618729096253	3.46624834575313	3.38202128244759	3.66070645952319	3.56559719125989	3.61237887468971	3.42818534727408	3.25433770548123	-0.331735670543787	0.520438950458126	0.780787600139836
Merged-chr4-10973785-4	chr4	10973687	10973887	+	658.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	33832.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	3.78382344638721	3.63419232207543	3.63584808290857	3.48055966864533	3.81537337812714	3.45541892256194	3.62134853513688	3.63382033590597	0.0576561184362595	0.905594415059314	0.964916319169902
Merged-chr17-70709381-3	chr17	70709261	70709461	+	985.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360665, intron 9 of 14)	intron (NM_001360665, intron 9 of 14)	137416.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	4.8790877157329	4.70808888305354	4.16591834327362	4.24534152478537	3.55802498695544	3.66343882698168	3.5263749212885	3.67346999252276	-2.66203951173022	3.43672599675948e-07	1.31659160238613e-05
Merged-chr10-117629414-4	chr10	117629347	117629547	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027468)	promoter-TSS (NM_027468)	-53.0	NM_027468	70574.0	Mm.339332	NM_027468	ENSMUSG00000020183	Cpm	1110060I01Rik|5730456K23Rik|AA589379|E030045M14Rik	carboxypeptidase M	protein-coding	4.49328024697573	4.6736437495046	4.40579064636631	4.85559954044376	4.64784169093194	4.2266484077284	4.5155824285861	4.94846452123055	-0.0422147015238981	0.915162854254795	0.968483970989646
Merged-chr5-149336064-4	chr5	149335961	149336161	+	801.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71057.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	4.01432747310988	4.04797645235162	3.69588323074432	3.7672695838971	3.95619522737205	4.08998886002433	3.90067569246277	4.26741244717946	0.473044182194885	0.281478816911913	0.59356128849354
Merged-chr9-65676519-4	chr9	65676435	65676635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010952)	promoter-TSS (NM_010952)	-13.0	NM_010952	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	7.25087808666834	7.21941915291374	6.93159481484301	7.00472582116583	7.29922113171309	7.05383599738718	7.24679426570719	6.95344384714517	0.0656450777842279	0.741781588697515	0.898388354542756
Merged-chr15-34428923-3	chr15	34428788	34428988	+	879.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358780, intron 14 of 18)	intron (NM_001358780, intron 14 of 18)	14337.0	NM_009083	19946.0	Mm.358632	NM_009083	ENSMUSG00000058600	Rpl30	-	ribosomal protein L30	protein-coding	3.566481350045	3.37890417100831	3.46833975888832	3.4242776817994	3.16609298817913	3.47560402496183	3.03896170246546	3.11514853864487	-0.93321253304318	0.0928134514999794	0.333351935831922
Merged-chr14-58322771-3	chr14	58322621	58322821	+	739.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	250035.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	3.4843778118975	3.30660267179956	3.2637990167951	3.40270533017082	3.37312404622892	3.37542723548436	3.1915669750972	3.43115369836045	-0.0790710344956097	0.879099480539124	0.954746715269166
Merged-chr10-20666757-4	chr10	20666653	20666853	+	972.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	58325.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	5.28155025895117	5.14561332780762	5.19032369492022	5.473779592514	5.38383640675821	4.82790464719328	5.13289933671659	5.27879415009727	-0.196869077788459	0.534149494879429	0.789066961676578
Merged-chr16-4878313-10	chr16	4878258	4878458	+	927.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145359, intron 1 of 2)	intron (NM_145359, intron 1 of 2)	1493.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	4.94883021562323	4.91772912237488	4.87400510089448	4.88642454975316	5.09772842440329	5.01252612015481	5.45369559259706	5.40350474026136	0.660339896513893	0.0339186743458545	0.18175843719518
Merged-chr1-120019650-4	chr1	120019533	120019733	+	974.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 1 of 13)	intron (NM_001012322, intron 1 of 13)	12653.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	4.92248235450763	4.60074158029813	4.95951797387595	5.00370605257632	5.39671792506092	4.86175054123154	5.16193438700255	5.27045944553194	0.593213200021641	0.0730102199542776	0.290811104987438
Merged-chr6-97419486-2	chr6	97419386	97419586	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 4 of 23)	intron (NM_145148, intron 4 of 23)	39800.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	2.20845245283941	2.17972850640681	2.20875760379552	2.10573540643481	1.92524120316135	1.95415007515802	1.93105966159324	1.93481740482633	-1.90007642673418	0.0327398228949232	0.177377671931629
Merged-chr5-31154322-4	chr5	31154213	31154413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008622)	promoter-TSS (NM_008622)	-62.0	NM_008622	17527.0	Mm.271923	NM_008622	ENSMUSG00000107283	Mpv17	Tg.Mpv17	MpV17 mitochondrial inner membrane protein	protein-coding	5.04423794763811	4.81728481029984	4.94515752851039	4.78822487468505	5.01428758987678	4.97317741263958	4.88653440216642	4.94183008627877	0.133368384841875	0.673787101153282	0.865875007454402
Merged-chr10-68176496-3	chr10	68176397	68176597	+	865.511108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	102229.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	3.70890425818376	3.63323602897942	4.07149532190199	3.56575828943296	3.16810412285203	3.01022805576088	3.25733189899449	3.20025712774637	-2.17762510710588	0.000269128304607597	0.00464057257598454
Merged-chr13-43171535-4	chr13	43171481	43171681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025935)	promoter-TSS (NM_025935)	-80.0	NM_001252640	67046.0	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding	6.33729948614249	6.36011231653969	6.18892889563704	6.00047468834484	6.19760083942426	6.26211131028155	6.40691209863875	6.05957093317084	0.0298918505302841	0.900029353913943	0.962949822613742
Merged-chr9-40392558-4	chr9	40392421	40392621	+	986.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	-16104.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	5.04971231962756	4.75777222182818	5.47880240461715	5.41765248662016	4.66116609642782	4.74644463202527	4.9565934820545	5.45050592081248	-0.425085618808635	0.264739879273295	0.576566406596513
Merged-chr10-127542698-5	chr10	127542731	127542931	+	898.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 77 of 88)	intron (NM_008512, intron 77 of 88)	-8272.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	2.81881683282441	2.66672295279014	2.75887932733948	2.63060452168161	2.567714361304	2.66376073326976	2.6210648641195	2.93011317696801	-0.07470597073751	0.908980436877252	0.966156082397695
Merged-chr2-38287296-4	chr2	38287195	38287395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146122)	promoter-TSS (NM_146122)	89.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	7.51647484968931	7.55596783789672	7.89706845181992	7.57410120504386	7.48866068991965	7.42909248555836	7.63624647810207	7.41671530829669	-0.191381868511987	0.294730871237918	0.606845492734849
Merged-chr9-61977478-4	chr9	61977433	61977633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 2 of 7)	MER20|DNA|hAT-Charlie	-30734.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	7.25907054751149	7.14226996306359	7.17498891852155	7.33317643281553	6.73971257464342	6.98300738139234	6.96201305893745	7.00506233808668	-0.436122247040667	0.022265631248816	0.137573382522524
Merged-chr1-180858938-1	chr1	180858838	180859038	+	629.833313	f0_c57.idr	intron (NM_145943, intron 3 of 6)	ORR1B1|LTR|ERVL-MaLR	7787.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	3.24892870829488	3.78126319725283	3.44844982144215	3.16256546519907	3.78611839806781	3.94540903406176	3.71019317210231	3.82039150364398	1.22399795888573	0.0179414139467646	0.118906136249233
Merged-chr1-106815482-4	chr1	106815410	106815610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18785.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	7.14318723972585	7.23198921997993	7.22265670944438	7.6466387597174	7.05429125360758	7.09520509682942	6.94948396802619	6.9928525087799	-0.434862095871164	0.034827726446625	0.184738262221054
Merged-chr7-29908648-4	chr7	29908553	29908753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243908, intron 1 of 4)	intron (NM_001243908, intron 1 of 4)	136.0	NM_001243908	73729.0	Mm.333743	NM_001243908	ENSMUSG00000099689	Zfp383	1110003H10Rik	zinc finger protein 383	protein-coding	5.82814086668175	5.81118727788259	5.96211085667893	5.80066947935964	5.31821811423213	5.80353246404036	5.91051235402671	5.91511332217357	-0.167797446295764	0.542770670533296	0.793922846530958
Merged-chr2-69017125-2	chr2	69017020	69017220	+	640.0	f0_balb.idr|f0_c57.idr	intron (NM_001347161, intron 4 of 10)	intron (NM_001347161, intron 4 of 10)	-118680.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	3.79410851220605	3.64754301013712	3.74514399065078	3.69699454895073	3.74884803390744	3.64088178777977	3.513751794891	3.9291029571129	5.90713511686163e-05	0.999899247030712	0.999927343164212
Merged-chr11-17159970-4	chr11	17159857	17160057	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 1 of 5)	CpG	659.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	4.61744560699379	4.78424791376225	4.53756218808044	4.64140196592851	4.46919849441743	4.58170116799381	4.43226548397804	4.72695578805154	-0.214177741823116	0.545240536952279	0.795802087018665
Merged-chr11-121234107-3	chr11	121234027	121234227	+	869.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3109.0	NM_026272	67608.0	Mm.291832	NM_026272	ENSMUSG00000000056	Narf	4430402O11Rik	nuclear prelamin A recognition factor	protein-coding	2.99866600477676	3.21852217149655	3.1849048510268	3.13137834468774	3.244898714185	3.23565682202577	3.17310014762175	3.18325387557966	0.285028674782873	0.599331044598293	0.826316125212269
Merged-chr15-99972781-4	chr15	99972645	99972845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284523)	promoter-TSS (NM_001284523)	-35.0	NM_001024526	207214.0	Mm.28811	NM_001024526	ENSMUSG00000023025	Larp4	DXErtd793|DXErtd793e	La ribonucleoprotein domain family, member 4	protein-coding	6.67199637373708	6.61560703658088	6.54729870048598	6.40814388030739	6.76129811669787	6.81892510123962	6.48049516079567	6.82304216701522	0.25138825531182	0.235964513850383	0.545918160675954
Merged-chr19-55850820-3	chr19	55850746	55850946	+	787.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-44475.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.06047910999144	2.90265634550255	3.22548230570983	2.93318270220105	2.97512847720552	2.83589098944628	2.928338015996	3.22354384428339	-0.130847603571621	0.828008767534126	0.934007956519098
Merged-chr5-62521230-3	chr5	62521136	62521336	+	844.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	244941.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	3.34117093409448	3.30933493601319	3.48785352243355	3.53480573890549	4.43819068262465	4.51227996900639	3.83762265386411	4.54272307394828	2.58431268553205	1.12863254178719e-06	3.90924261274308e-05
Merged-chr3-28050232-4	chr3	28050148	28050348	+	841.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 11 of 25)	intron (NM_008875, intron 11 of 25)	66077.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	3.94683072923912	3.97384987662081	3.94737949021929	4.12293042740686	4.34978232086258	4.21950225600099	4.03089034656692	4.13875906963862	0.477850557510822	0.247856446696879	0.559021353152095
Merged-chr8-10832165-6	chr8	10832106	10832306	+	944.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCCCCA)n|Simple_repeat|Simple_repeat	50248.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	4.05478793488134	3.76034547934332	4.23582769597541	4.22443172114781	4.23979369162016	4.12905587362808	4.17430552705527	4.00367943147907	0.137978924810048	0.746825609815425	0.900253617240193
Merged-chr4-58999896-4	chr4	58999799	58999999	+	873.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3294.0	NM_001033165	72429.0	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	4.2088115049478	3.79238942685139	3.89667631859922	3.93844913426391	4.16104629355907	3.85463672509097	3.60280936429607	4.03782831640016	-0.0686526278132834	0.882704493724502	0.955814918609989
Merged-chr12-104742452-4	chr12	104742357	104742557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148948, intron 1 of 26)	intron (NM_148948, intron 1 of 26)	9495.0	NM_148948	192119.0	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	6.32132719583468	6.43608189407728	6.15950107226058	6.68484773283876	6.58105094919506	6.69264226264764	6.57779675399107	6.52853798292609	0.230966045160773	0.31398924621764	0.62599967947245
Merged-chr3-104995898-4	chr3	104995757	104995957	+	858.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34148.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	4.1943406234382	3.5834424910187	4.02378703298561	3.78956542681934	3.72952442462245	3.77533711905044	3.9117766563508	4.26965816276445	0.0734688797512526	0.879164828533485	0.954746715269166
Merged-chr1-140180895-1	chr1	140180795	140180995	+	540.0	f0_balb.idr	intron (NM_009888, intron 1 of 21)	intron (NM_009888, intron 1 of 21)	2516.0	NM_009888	12628.0	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	2.57545059402628	2.58962898455905	2.57577978938472	2.62952541807141	2.2301908353645	2.40496670324063	2.37111356277665	2.51179895028283	-1.28079846682355	0.0828080020924636	0.312629084254364
Merged-chr16-13373167-4	chr16	13373063	13373263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153588, intron 1 of 14)	intron (NM_153588, intron 1 of 14)	14742.0	NM_153588	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	5.21238437699722	5.00570174917553	5.21326950052516	5.31084762407653	5.19432543328734	5.14650509977495	5.49473028521022	5.51881862377129	0.268292006663427	0.373069492676795	0.676742868555304
Merged-chr1-184484780-5	chr1	184484643	184484843	+	916.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72948.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	3.27944741115433	3.46390935958626	3.8021252151511	3.46068847075243	3.59985279941459	3.76945931244093	3.78532281012491	4.0579644127317	0.91314538205023	0.0678054920247526	0.277838185299054
Merged-chr13-24095008-4	chr13	24094916	24095116	+	883.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026825, intron 21 of 37)	MIR|SINE|MIR	-103802.0	NM_145399	214189.0	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	4.6206429572617	4.78829575474994	4.31322836979223	4.62722831301275	4.75846400020493	4.75390235720542	4.4779575928626	4.49534514302974	0.0639009930052487	0.861015529622667	0.947515986982142
Merged-chr9-44435964-4	chr9	44435868	44436068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033469, exon 3 of 5)	exon (NM_001033469, exon 3 of 5)	4900.0	NM_001033469	382074.0	Mm.335103	NM_001033469	ENSMUSG00000074397	Foxr1	Foxn5|Gm1115	forkhead box R1	protein-coding	5.65404610072294	5.49891849213609	5.22412811487154	5.44737135547309	5.57558510077881	5.55978972966784	5.41628001324883	5.60141074645837	0.133931704242899	0.626041467263	0.840227887296901
Merged-chr9-88546368-4	chr9	88546272	88546472	+	942.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-1648.0	NM_001163061	71640.0	Mm.259988	NM_001142943	ENSMUSG00000032425	Zfp949	4930422I07Rik|Nczf	zinc finger protein 949	protein-coding	5.23133642348691	5.14302084118819	4.9391768158227	5.12693255143179	5.42150283431538	4.694207267515	5.08522217216715	4.7806476525555	-0.129165371058038	0.710685082523285	0.884203816607274
Merged-chr1-10232431-4	chr1	10232277	10232477	+	985.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001102430, exon 1 of 38)	exon (NM_001102430, exon 1 of 38)	293.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	5.15474711591952	4.97911489952679	5.36202723282064	5.247600901345	4.90491942565394	4.83630131364679	5.51075129563042	5.15207882955064	-0.127963591905181	0.700824530723361	0.879374176246616
Merged-chr5-103719953-4	chr5	103719851	103720051	+	911.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34211.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	4.53366372365419	4.61585403622342	4.01875421725263	3.96608614217339	5.15085206604042	5.07531253873043	4.8796370847864	4.53143178885703	1.35310433950224	0.000969894017512324	0.0131122670982924
Merged-chr3-37140770-3	chr3	37140687	37140887	+	968.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14833.0	NM_008366	16183.0	Mm.14190	NM_008366	ENSMUSG00000027720	Il2	Il-2	interleukin 2	protein-coding	3.77298750036564	3.48883126344521	3.66831488648043	4.17008232870206	3.8727892080115	3.54313112277671	3.80692447365828	3.71991690455062	-0.210768621815661	0.681001270749157	0.869036611076104
Merged-chr4-55631331-4	chr4	55631208	55631408	+	979.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-98833.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	5.18990556918179	5.19356299799179	5.04143778235786	5.54899191517607	5.81938186788979	5.65028810647928	5.65445561687415	5.93839841923968	0.834156394032166	0.00499855373278387	0.0475441812958729
Merged-chr5-121450096-4	chr5	121450011	121450211	+	977.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026129, intron 1 of 2)	intron (NM_026129, intron 1 of 2)	2363.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	4.98593869732675	5.44783101770605	4.91080408817575	4.61165684988951	5.31921909024548	5.16451893065603	5.06798348698165	5.69729271911078	0.590535128374972	0.101005183480141	0.348816066902768
Merged-chr7-5062244-4	chr7	5062149	5062349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133671, exon 1 of 12)	5' UTR (NM_133671, exon 1 of 12)	106.0	NM_001205231	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	7.04197622344137	7.58121441787438	7.40053174849078	6.98156535277068	7.38690237478424	7.72378947176018	7.13019667130824	7.4050664537493	0.210136399818065	0.354234382844882	0.661005351593023
Merged-chr8-53511780-4	chr8	53511696	53511896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205054)	promoter-TSS (NM_001205054)	94.0	NM_001005847	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	8.3067062315726	8.31491122382232	8.39489057134362	8.27507190976978	8.49977525582927	8.49699309513286	8.61891560865111	8.14086961453101	0.16545365103387	0.318696319961173	0.630539142678577
Merged-chr17-47408498-4	chr17	47408428	47408628	+	978.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6183.0	NM_001172091	75462.0	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	4.42229105859372	4.82239627982723	4.64379542827356	4.42274788461937	4.78100286523255	4.96886375535662	4.58133269825542	5.08183222466103	0.592906651016263	0.0990999587577066	0.345116491238064
Merged-chr4-47333734-4	chr4	47333630	47333830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19492.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	5.84954906092305	5.7387004195001	6.14171090589621	6.41592504968189	5.46206173897348	5.85237337218755	5.72410261636231	5.58803449823713	-0.686312412133112	0.0170488025771513	0.11484023077875
Merged-chr1-161286929-3	chr1	161286823	161287023	+	774.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35713.0	NM_001303408	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	3.23332977098344	2.75550378551872	3.10799657501808	2.88157069849325	3.60303094894582	3.46564972701305	3.33465376388589	3.50163839236132	1.83359281069057	0.0014546702072246	0.0182035813431856
Merged-chr15-50870924-4	chr15	50870829	50871029	+	929.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	18120.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	4.32155658279778	3.98243977000534	4.14232160924276	4.1123407082655	4.41718786130164	4.315446248983	4.07652257153094	4.54609779701474	0.527214537980916	0.189687977797177	0.48866451580258
Merged-chr5-34501030-4	chr5	34500925	34501125	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139064, intron 2 of 5)	intron (NM_139064, intron 2 of 5)	12954.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	5.04765272174214	5.09874956876546	5.26655498043056	5.13349337533798	4.7889013896803	4.42265495314117	5.58467421216476	5.14301613582074	-0.154894986124977	0.68777611241331	0.872494020965841
Merged-chr8-119436588-2	chr8	119436488	119436688	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027950)	promoter-TSS (NM_027950)	-574.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	3.56506295162511	3.58607556931008	3.621663354033	3.73528259611865	3.70639124731559	3.6222779579546	3.76079704860976	3.91245540059202	0.353785948170837	0.447661790910898	0.733172822443065
Merged-chr3-145924123-4	chr3	145924034	145924234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009740)	promoter-TSS (NM_009740)	-128.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	9.92772246364016	10.0273535501812	10.2098279359666	10.0524414650754	9.9689954671492	10.0719242039157	10.2642881270622	9.83014749618193	-0.0180905931489877	0.905910059953984	0.965064837126805
Merged-chr2-22986503-1	chr2	22986403	22986603	+	613.666687	f0_balb.idr	intron (NM_001077190, intron 2 of 10)	intron (NM_001077190, intron 2 of 10)	53738.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	3.56204692321331	3.28404780692545	3.41143761510911	3.52171168143211	3.16183324653309	3.00279000592826	3.0342732391416	3.60687013941487	-0.813312188453465	0.168036922887304	0.460010318306836
Merged-chr5-105032526-2	chr5	105032430	105032630	+	881.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029509, intron 3 of 9)	RLTR13C2|LTR|ERVK	21031.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	2.68843203698617	2.61002974052721	2.68872657847767	2.48280919623184	2.73627587870246	2.93276969057381	2.93088929663553	3.20122870870113	1.63844121061924	0.0106138709271338	0.0824135403085091
Merged-chr6-83456003-4	chr6	83455888	83456088	+	953.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 1 of 11)	CpG	404.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	4.89958612235994	5.19987792929996	5.04033051288039	4.46370022232518	5.13027993176319	5.33786746578924	5.01556456778049	4.74034596498104	0.307190709654031	0.401483565769603	0.699068828443655
Merged-chr4-53412167-4	chr4	53412054	53412254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28259.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	6.97547970286404	7.63833790432949	7.12619806905054	7.06831620173561	7.12837166498383	7.18031513254119	7.07862175248895	7.28594047867199	-0.081467096436943	0.708408080767845	0.88284651634377
Merged-chr2-72838249-4	chr2	72838135	72838335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24518.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	6.12518673037715	6.66830603760309	6.93624555059923	6.12996085745446	7.15383574074623	7.44567681599395	7.13186246862885	6.98120541210696	0.961353687576401	0.00020146838479502	0.00366011183290574
Merged-chr11-29570931-3	chr11	29570834	29571034	+	784.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163521, intron 9 of 11)	RLTR20C2_MM|LTR|ERVK	-22894.0	NM_001033865	78294.0	Mm.180003	NM_024277	ENSMUSG00000020460	Rps27a	0610006J14Rik|Uba52|Ubb|Ubc	ribosomal protein S27A	protein-coding	3.73642058864466	3.45522808409256	3.63575945694303	3.75156179206651	3.69568386484365	3.69808519208726	3.62125849151522	3.46560076244879	-0.0917338907488632	0.849010247755435	0.942992906686184
Merged-chr1-33878404-4	chr1	33878319	33878519	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177235, exon 3 of 7)	exon (NM_177235, exon 3 of 7)	29202.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	5.2655514702013	4.87609099619857	5.10743090994693	4.72730031802913	5.4809984277099	5.5794225659028	5.29808855325625	5.10393363020054	0.724736858248824	0.024305809748406	0.145714076651376
Merged-chr1-87327392-3	chr1	87327291	87327491	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146112, intron 1 of 28)	CpG	393.0	NM_001110212	227331.0	Mm.23065	NM_146112	ENSMUSG00000048000	Gigyf2	2610016F01Rik|A830080H02Rik|AI852361|AW259676|BC006835|Tnrc15|mKIAA0642	GRB10 interacting GYF protein 2	protein-coding	5.04089651013187	5.21559955449307	5.27450590125277	5.31011275106555	5.11357254143606	5.3221683327394	5.12162125973723	5.68130272628093	0.187365334694627	0.548263165811383	0.797319519674758
Merged-chr6-54655912-1	chr6	54655812	54656012	+	729.666687	f0_balb.idr	Intergenic	Intergenic	-25712.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	3.88812076575563	3.63444050812009	3.68673038105212	3.36617553776333	2.8404013328244	3.04524171413366	2.92327125074772	2.93012392053856	-3.22245165374306	7.15417742026677e-06	0.000204426814370602
Merged-chr18-65430815-4	chr18	65430691	65430891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172833)	promoter-TSS (NM_172833)	-206.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	8.67345378240823	9.11979959372114	8.86948855927175	8.84540766608116	8.96827842358272	9.1988023394714	9.25338404792472	9.01155579672913	0.277543983460198	0.0908508996717603	0.329365971820332
Merged-chr12-26449656-4	chr12	26449564	26449764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021384, intron 3 of 5)	intron (NM_021384, intron 3 of 5)	6788.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	5.51037166470746	5.71996191175378	5.26924256597883	5.61801835607029	5.35971480988264	5.34468058110186	5.56318257247828	5.80075426380478	-0.0382443969552997	0.895105010870055	0.96073210268323
Merged-chr5-98055017-3	chr5	98054909	98055109	+	848.305542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24047.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	3.56068330510709	3.438082077429	3.34742439883638	3.34052547875021	4.726326139913	4.13938885378608	4.35891314169936	4.14355194590424	2.69367639671624	1.49048407591152e-08	7.64896654933716e-07
Merged-chr10-22301768-4	chr10	22301662	22301862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	ORR1C1|LTR|ERVL-MaLR	-4958.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	6.21001022005404	6.1792688949896	6.07649321656254	6.29378201873366	5.6622149550122	5.43479579561584	6.00429644140861	5.96637344366723	-0.653347565144808	0.01148872144582	0.0870786608233436
Merged-chr5-112251486-4	chr5	112251426	112251626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312884, intron 1 of 4)	intron (NM_001312884, intron 1 of 4)	992.0	NM_001312884	12959.0	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	5.63325773691595	5.29605843488581	5.8904747115364	5.57197240853096	5.65959472380407	5.42418462870036	5.63116333995615	5.86503696034966	0.0815980498168225	0.774231299002467	0.911768711917431
Merged-chr3-65863502-4	chr3	65863423	65863623	+	943.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94726.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	4.53079957282447	4.83566131078555	4.17630425941178	4.93910247132317	4.97162383846268	4.75124552297631	4.92249290125039	4.80772055181525	0.402802260075325	0.295545891870775	0.607486818489414
Merged-chr7-46830920-4	chr7	46830827	46831027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14877.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	6.8821800344345	6.89893556940414	7.2661985529592	7.40818354917549	7.12643721368541	6.98921090079509	7.06545735018052	7.130963374115	-0.0907860695536808	0.669358257620462	0.863479905771059
Merged-chr9-106891318-3	chr9	106891162	106891362	+	874.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_029103, intron 1 of 3)	intron (NM_029103, intron 1 of 3)	676.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	3.47716415716472	3.24787406792883	3.80290096294991	3.41491314576095	3.83486480711819	3.71438778980591	3.63539220756738	4.09738634120945	1.03637001386533	0.0395044603049201	0.200165115022177
Merged-chr5-113643677-4	chr5	113643566	113643766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359060)	promoter-TSS (NM_001359060)	-63.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	6.16907228184767	6.64646605042239	6.19050642571007	6.10287304604325	6.57172418732333	6.60379948743951	6.09710476617168	5.91770536137965	0.0645404821628721	0.815194067523011	0.928710624683246
Merged-chr3-130946154-3	chr3	130945993	130946193	+	766.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164204.0	NM_010703	16842.0	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	3.11356514185656	3.15064097497141	3.42736582098864	3.15774501779304	2.7978198189938	3.28500721965951	2.77235275070913	2.92193138468625	-1.08629753394819	0.0863001882015592	0.320285786328734
Merged-chr2-85560413-4	chr2	85560287	85560487	+	911.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18828.0	NM_146437	258429.0	Mm.377497	NM_146437	ENSMUSG00000111179	Olfr996	MOR175-4	olfactory receptor 996	protein-coding	4.46799517659449	4.32106863263253	4.51136871481564	4.75561970066438	4.75019879378918	4.00363062296383	4.75249059646129	4.87057353965246	0.231390641180638	0.581334471937229	0.816253350773532
Merged-chr5-21654514-3	chr5	21654403	21654603	+	861.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026034, intron 4 of 5)	intron (NM_026034, intron 4 of 5)	8519.0	NM_026034	67211.0	Mm.260782	NM_026034	ENSMUSG00000038525	Armc10	2810037C14Rik|Svh	armadillo repeat containing 10	protein-coding	3.57542317899998	3.39335124947216	3.24590674381024	3.44459285877328	3.49500805399695	3.41866341076677	3.29546618175482	3.41978665532316	-0.0306670075926964	0.95232380989643	0.983110341498473
Merged-chr13-119453799-1	chr13	119453699	119453899	+	654.0	f0_balb.idr	intron (NM_145457, intron 9 of 10)	intron (NM_145457, intron 9 of 10)	-8960.0	NR_153825	67392.0	Mm.390641	NM_026127	ENSMUSG00000062822	4833420G17Rik	2210017J06Rik|5730533D17Rik|AW107518|C85193	RIKEN cDNA 4833420G17 gene	protein-coding	3.6897337032575	3.80638724386787	4.01676087849922	3.68392737636112	3.60838025322369	3.86194881301641	3.62177559056134	3.39186153444908	-0.523704580177691	0.284147908546372	0.59612603107823
Merged-chr8-70625232-4	chr8	70625115	70625315	+	696.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVK26-int|LTR|ERVK	6880.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	4.06135476528994	4.23334651503913	4.105341980471	3.68447263762834	3.72464389848253	3.88646421655278	3.63639131553115	3.86983109017844	-0.700703753342633	0.138903536675333	0.414457946133613
Merged-chr15-76657004-4	chr15	76656917	76657117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276321)	promoter-TSS (NM_001276321)	-116.0	NM_001276321	54151.0	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	6.28792969971818	6.38203074774068	6.13030265566051	6.06666909613091	6.27930731214714	6.50111551388054	6.477331862031	6.20772034881175	0.23170923639055	0.314236593163602	0.626303588947018
Merged-chr16-10844252-4	chr16	10844136	10844336	+	874.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9177.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	4.11667332310027	4.04563292965451	4.50435213329654	4.54627579264458	4.16023748163748	4.19076439522297	4.40737044978861	4.25712316935064	-0.194207188105057	0.639697254833429	0.847661979704159
Merged-chr15-61999787-4	chr15	61999681	61999881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14440.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	7.97675987148414	8.26772568926727	8.24377981629954	8.19836504562186	7.84270674057848	8.30816713919305	8.19923356371316	8.0871395836095	-0.0820287777301603	0.64327274054873	0.849555525470532
Merged-chr2-6366822-4	chr2	6366722	6366922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181399, intron 1 of 13)	intron (NM_181399, intron 1 of 13)	14086.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	6.93935599099619	6.68484333538997	7.01364351148034	7.22481327593726	6.53257495719273	6.63528279540141	6.73142710104509	6.60798323205338	-0.518328225558535	0.0169228167671179	0.114240247976734
Merged-chr11-43715502-4	chr11	43715419	43715619	+	945.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164231, intron 2 of 3)	intron (NM_001164231, intron 2 of 3)	32454.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	4.58408577469035	4.65287675920082	4.93694657152689	4.32942699098397	4.55810803800411	4.44484528548585	4.71496886986023	4.66047988088667	-0.0635606577106347	0.865797536962532	0.949727926552738
Merged-chr11-98963402-2	chr11	98963302	98963502	+	751.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001176528, intron 1 of 7)	intron (NM_001176528, intron 1 of 7)	-1470.0	NM_001361954	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	3.07703692659946	3.03649017346925	3.25994151189893	2.91319824175749	3.23292614973408	3.18974050226777	3.18965476725704	3.64602521145378	0.984900892398959	0.0822251374919376	0.311313992635033
Merged-chr8-107576865-4	chr8	107576750	107576950	+	715.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11632.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	3.3383506784386	3.52691608917591	3.45861688830243	3.86886768435512	3.52667553363256	3.62948412596962	3.501171190865	3.45683693538078	-0.17253163627443	0.741332786224122	0.898139463026673
Merged-chr16-52060535-4	chr16	52060420	52060620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	28971.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	8.88331702720357	9.14707971842034	8.97426904742383	9.00947594151078	9.12886959264244	8.97843325134586	9.0244583466799	8.77845700472569	-0.0269554585461531	0.860800841746497	0.947426570442475
Merged-chr2-122147593-4	chr2	122147501	122147701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009735)	promoter-TSS (NM_009735)	-86.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	8.45811785897133	8.41923679567032	8.0700720547502	8.18387009764492	8.49455939441519	8.41131345656883	8.18894479421926	8.20438566842775	0.055811038486516	0.749491190949771	0.901354058272243
Merged-chr15-86225281-4	chr15	86225195	86225395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	10836.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	8.25627907506239	8.09578079073068	8.47557392631672	8.34632622441718	7.80466042475796	7.84492741611652	8.26319891825057	8.32912871213097	-0.282595745983205	0.145253478961991	0.424703750063573
Merged-chr15-96475603-4	chr15	96475520	96475720	+	932.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14777.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	4.71385831992242	4.84167326607414	5.07785085704762	4.76362719833919	4.15548733438395	4.54658576049824	4.65381689636052	4.85583351535924	-0.609580911413368	0.109435062586454	0.365262551996626
Merged-chr11-54100964-4	chr11	54100876	54101076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011031)	promoter-TSS (NM_011031)	52.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	5.14466439235261	5.49451180862161	5.63988351234439	5.22850039945856	5.14512321234622	5.28751657085793	5.12044533357787	5.00019861959839	-0.445453146378448	0.148357170127661	0.430071295027352
Merged-chr3-103745502-4	chr3	103745398	103745598	+	888.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010432, intron 14 of 15)	intron (NM_010432, intron 14 of 15)	-7497.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	4.93956138908158	4.41545651199998	5.29746740532791	5.10680805900073	4.24973874729873	4.36922937615743	4.42018901404432	4.52784448704999	-1.27807601755055	0.00130478732469454	0.0166888512101406
Merged-chr1-178336603-4	chr1	178336480	178336680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149827, intron 1 of 16)	CpG	1235.0	NM_016805	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	8.13099768117408	8.21868989753003	8.22333132795952	8.02348081127418	8.30305813672386	8.34717227430515	8.24160484720217	8.14567526140762	0.147796367809948	0.344790096627467	0.653255859394495
Merged-chr8-123283144-3	chr8	123283041	123283241	+	964.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016925, intron 28 of 42)	B1F1|SINE|Alu	-28919.0	NM_028200	72325.0	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	3.98759815360332	3.86855203723447	4.28444667878631	4.53459762693485	3.46709517166022	3.51647781940114	3.97067428119853	3.7799236720708	-1.44714557930061	0.00449699499758131	0.0439278559853066
Merged-chr11-105460087-4	chr11	105459990	105460190	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3355.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	5.1489360675468	4.82269648278181	5.14980705838218	5.33332592716043	5.40254304512943	4.90957813854535	5.27754449193611	5.53730232076099	0.310650692400977	0.343004563213685	0.651719657385802
Merged-chr8-4166320-4	chr8	4166172	4166372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039578)	promoter-TSS (NM_001039578)	-295.0	NM_001039578	213027.0	Mm.437106	NM_153536	ENSMUSG00000011832	Evi5l	1700084G18Rik|2310039H16Rik|3110007G05Rik|B130050I23Rik	ecotropic viral integration site 5 like	protein-coding	9.56692120725057	9.6615956084171	9.84259877439866	9.80504242311363	9.7881364249473	9.91964596724208	9.84655154881808	9.57497863028265	0.0772734099427857	0.604540644875152	0.828499336931889
Merged-chr1-36272314-3	chr1	36272231	36272431	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153408, intron 1 of 3)	intron (NM_153408, intron 1 of 3)	1094.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	3.99978819990402	4.29764625214508	4.29369857186849	4.15831784843415	3.99077122136901	4.46549193782187	4.35807601827003	4.52926892720229	0.367564800679823	0.371971892868097	0.675938343451834
Merged-chr1-149947833-4	chr1	149947739	149947939	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	13451.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	5.25086914661433	5.31644881079383	5.37056299880397	5.70111564850352	4.84129810159287	5.29691258893654	5.28612851607196	5.15124632809417	-0.538115627181162	0.0899116710198461	0.327423658626912
Merged-chr3-41743714-4	chr3	41743608	41743808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291048, intron 1 of 4)	intron (NM_001291048, intron 1 of 4)	1090.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	4.64668536163009	4.76158229752375	4.91987163289301	4.63380707746775	4.60016350374707	5.05851731309852	4.99615860137833	5.40395587622338	0.597414454992162	0.0964629099414126	0.340328796367772
Merged-chr17-4996515-4	chr17	4996462	4996662	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 1 of 19)	CpG-5917	1488.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	3.99878981643523	4.10035480752641	3.89276938635716	4.32508572957431	4.35659644058499	4.17282503582227	4.08158584164412	4.42998610002208	0.410506284744308	0.334828822299918	0.645239354575747
Merged-chr3-51360356-3	chr3	51360241	51360441	+	882.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-19697.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	3.20024951269291	3.03886706151275	3.12895887469799	3.02523468510118	3.78362191143651	3.93451987440177	3.65287043483555	3.89262938287312	2.48925799304553	1.57919740901854e-06	5.29953394561399e-05
Merged-chr1-16060303-1	chr1	16060203	16060403	+	861.0	f1_c57bl6.idr	Intergenic	MER5B|DNA|hAT-Charlie	33022.0	NM_001243238	75799.0	Mm.78557	NM_001243238	ENSMUSG00000067795	4930444P10Rik	-	RIKEN cDNA 4930444P10 gene	protein-coding	2.65113421591984	2.44349265881716	2.43341528472078	2.21905194871707	2.92649238787718	2.89076717774073	2.88337802941638	2.7779586266642	2.39234048907523	0.00079648599698285	0.0111997385972426
Merged-chr9-90253732-4	chr9	90253633	90253833	+	959.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	17036.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	5.16960359910072	4.81477352316655	5.07522563981285	5.63763605727972	5.29822579913503	4.58722793407758	4.75771355577999	5.03837470135208	-0.501842634364833	0.193271192582826	0.493524757598945
Merged-chr15-100637133-8	chr15	100636982	100637182	+	830.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174992)	promoter-TSS (NM_174992)	-142.0	NM_001033872	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	3.90896983033508	3.75093208499748	4.4457654540583	3.94706486492623	3.57356655240417	3.57569377991156	3.51065396145626	3.75534294795672	-1.27471075061061	0.0110856884706391	0.0849190938066744
Merged-chr6-37441151-4	chr6	37441046	37441246	+	931.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	1002.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	4.2556500368312	4.20517448337957	4.00040371531236	4.76958288497494	4.58676336705372	4.38341146539423	4.19102503243739	4.38592425884819	0.0814032126562058	0.853489054195037	0.944808512609138
Merged-chr3-108151882-4	chr3	108151812	108152012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001305461, exon 2 of 3)	5' UTR (NM_001305461, exon 2 of 3)	3020.0	NM_001305461	229714.0	Mm.73666	NM_175470	ENSMUSG00000046793	Gpr61	-	G protein-coupled receptor 61	protein-coding	5.67011238943301	5.57511447962968	5.33887938153789	5.40693511620756	5.43497314833233	5.60572515533681	5.59302773022393	5.64252504488875	0.116837689504384	0.667611092607344	0.862555179712084
Merged-chr14-17479119-3	chr14	17479022	17479222	+	994.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-181838.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	3.41775331596002	3.19630528921812	3.63972929465983	3.89269428294145	3.62594524741206	3.704539335065	3.40606321311541	3.63762110705793	0.0661585891684008	0.903835662060055	0.964384928642972
Merged-chr2-3336062-4	chr2	3335933	3336133	+	926.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030063)	promoter-TSS (NM_030063)	-135.0	NM_030063	78245.0	Mm.99733	NM_030063	ENSMUSG00000026644	Acbd7	9230116B18Rik	acyl-Coenzyme A binding domain containing 7	protein-coding	4.3023374275149	4.42295048057158	4.34449451637692	4.1139577405965	4.09575316714661	3.85076982017225	4.15166882563913	4.38178554470866	-0.397657739481842	0.342737311557395	0.6516462545027
Merged-chr9-96478678-4	chr9	96478572	96478772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011279)	promoter-TSS (NM_011279)	3.0	NM_011279	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	7.69617758466557	7.56438791640705	7.32297847896582	7.3450976179347	7.69847773008036	7.96814356860226	7.82580286607586	7.59119220128205	0.382028278768675	0.0416957718032638	0.206776516490247
Merged-chr3-95758632-3	chr3	95758528	95758728	+	936.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3651.0	NR_151588	71807.0	Mm.271754	NM_027931	ENSMUSG00000028107	Tars2	2610024N01Rik|AI429208|Tarsl1|thrRS	threonyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding	3.98151304810492	4.04694007276207	4.56475806215454	4.07356708344575	4.0356676634573	4.10599650169049	4.06605106867939	4.3040281670376	-0.130524848171003	0.761598536371033	0.906564246038326
Merged-chr18-35662238-4	chr18	35662124	35662324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027733)	promoter-TSS (NM_027733)	-38.0	NM_029485	71242.0	Mm.151498	NM_027733	ENSMUSG00000024352	Spata24	2700012K08Rik|4930583E11Rik|5133400G04Rik|AU016220|TIPT|TIPT2	spermatogenesis associated 24	protein-coding	5.89388238366958	6.06571835638017	6.29749787084462	6.14118437729227	6.16569818325284	6.25673959081737	6.49525245507524	6.38049093934123	0.327902948691496	0.163272906439479	0.452904298729887
Merged-chr13-60892466-4	chr13	60892381	60892581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	4966.0	NM_007797	13025.0	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	6.81899039583408	6.9586827183616	6.40834077899374	6.51507394522053	6.70781862508918	6.6932169460006	6.85101203285224	6.65731411951979	0.0572529707896597	0.79780064349241	0.921862017583033
Merged-chr11-120916669-4	chr11	120916557	120916757	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 3 of 18)	intron (NM_027745, intron 3 of 18)	16215.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	4.82098768125565	5.42045320334433	5.02035755838325	4.73452540702166	5.79803951811386	5.65260515601769	5.03208279626751	5.28244520350179	0.837524798760505	0.018311102677038	0.120739342797694
Merged-chr15-25623143-4	chr15	25623030	25623230	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	CpG	580.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	4.82555615216716	5.48053048815522	5.24762532341463	4.65037135026204	5.34084470504062	5.42066155408078	5.22138795507608	4.94188329054493	0.298699327295349	0.406389228023176	0.70289842445172
Merged-chr10-119050155-4	chr10	119050050	119050250	+	952.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152787, exon 2 of 4)	non-coding (NR_152787, exon 2 of 4)	349.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	4.66602119369046	4.49027926072029	4.10229758707026	4.23773749762359	4.76244849334518	4.56676381549727	4.28472578577814	4.30090624184629	0.270453780501076	0.505547891202978	0.771488881809541
Merged-chr2-11439489-4	chr2	11439380	11439580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-40980.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	5.89238004370949	5.52858353324442	5.93691827252642	5.53515995617778	5.86368182423661	5.7721032278899	5.74823779602751	5.99515424326652	0.212622880078068	0.424812396328072	0.716499728880997
Merged-chr11-51262475-1	chr11	51262375	51262575	+	767.5	f0_balb.idr	promoter-TSS (NM_007714)	promoter-TSS (NM_007714)	582.0	NM_001358282	193286.0	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	4.48412889818388	4.31940099752178	4.3245532132187	3.79286008181935	3.88619727438256	4.41022407676295	4.38641990302324	4.32176337360002	0.0438663422384778	0.922621794497403	0.971339565894047
Merged-chr2-84429926-3	chr2	84429828	84430028	+	859.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4662.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	3.55915128703215	3.37902516060749	3.21267048548604	3.51864184647322	3.57739340414171	3.51121182337751	3.54493586254182	3.33722477634412	0.228921178734036	0.655020563077579	0.855853767547996
Merged-chr7-28809140-4	chr7	28809062	28809262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1728.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	6.55820168675422	6.75248038342652	6.9875961037748	6.73234144910228	7.12994975373154	7.27173956045206	7.30780111623885	6.89187633379384	0.547942339100595	0.00834394654795056	0.0691562379292703
Merged-chr19-47089838-3	chr19	47089740	47089940	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011053)	promoter-TSS (NM_011053)	785.0	NM_023211	66477.0	Mm.29722	NM_023211	ENSMUSG00000071528	Usmg5	2010301L15Rik	upregulated during skeletal muscle growth 5	protein-coding	3.09337814056064	3.20339773622753	3.02790695603075	3.26307749799254	3.01327668312214	3.26819046638538	3.26072014001453	3.56901559119641	0.487989110849152	0.394954059846015	0.693962849315713
Merged-chr18-69400155-4	chr18	69400081	69400281	+	901.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	54021.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	3.46758669420569	3.91417269002181	3.76364878292656	3.76533387411449	3.8640319488525	4.035515417605	4.07033445162853	3.65117170759946	0.492422226957656	0.294597868662025	0.60675402729387
Merged-chr2-102672137-3	chr2	102672030	102672230	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 1 of 10)	MTC|LTR|ERVL-MaLR	13441.0	NM_001361018	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	6.38199233188437	6.14631826622854	6.66551643043865	6.39629256859459	4.10550622876037	4.63841608753929	4.40947884804991	4.75533408002734	-3.73083602401071	2.89154509110084e-24	1.67331128487371e-21
Merged-chr6-88066867-4	chr6	88066772	88066972	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-17601.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	4.24135994038084	4.30002033747491	4.28773746088996	4.31255149690687	4.18515176574136	4.54512492545415	4.43517456071325	4.28509206117156	0.175517693339052	0.64646461900765	0.851366985708531
Merged-chr12-105001114-1	chr12	105001014	105001214	+	636.666687	f0_balb.idr	intron (NM_172500, intron 1 of 16)	intron (NM_172500, intron 1 of 16)	-2437.0	NM_001042699	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	3.21723388173861	3.08600953826593	3.16732472895676	3.13718093129632	2.77849710083103	2.69833001496986	2.73661775465477	2.67005869355799	-2.06846933362695	0.00223026150853566	0.0254362736606409
Merged-chr15-81848501-4	chr15	81848407	81848607	+	952.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_020507, exon 2 of 2)	3' UTR (NM_020507, exon 2 of 2)	9819.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	4.89950726476849	4.97447299388896	4.42160109119315	4.33265292556799	5.04671315344397	4.93267544017402	4.73690219976481	4.3698933718826	0.253789917280476	0.528420321230874	0.785064288142191
Merged-chr19-56773701-3	chr19	56773637	56773837	+	962.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	39946.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	3.31890511715694	3.03688662207085	3.54466595351449	3.57953321881717	3.23303598595517	3.55310159094974	3.36664612722855	3.81934443167402	0.386231981110578	0.502274721009712	0.769575778516236
Merged-chr7-51861797-4	chr7	51861701	51861901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330608)	promoter-TSS (NM_001330608)	-214.0	NM_001330608	14453.0	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	6.9620001624104	6.76355932350938	6.82999423883737	6.82068111645069	6.91516409995467	6.99275288365964	7.30521367652743	6.72276136957335	0.218397329741974	0.300398095546195	0.612422387893833
Merged-chr9-106212117-4	chr9	106212013	106212213	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011876, intron 3 of 8)	intron (NM_011876, intron 3 of 8)	9005.0	NM_011876	23999.0	Mm.274346	NM_011876	ENSMUSG00000023277	Twf2	A6-related|AU014993|Ptk9l|Ptk9r	twinfilin actin binding protein 2	protein-coding	4.93645574907338	6.2316050762838	5.65516904843488	5.40910309267052	5.73502000614858	5.64321510795892	5.5227687925584	5.27597160876855	-0.145298200416138	0.689846866571197	0.873623035418265
Merged-chr3-127762647-4	chr3	127762539	127762739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	17888.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	6.1914401482354	5.86323131670724	5.53558524671066	6.12469625844524	5.21942517185832	4.9046303667364	5.26495427038942	5.53165895980607	-1.21078435826208	9.92624230131329e-05	0.00201753284056305
Merged-chr5-27995362-4	chr5	27995266	27995466	+	688.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76046.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	4.17336138078252	3.87260490734618	4.08200412388825	3.58714509432393	3.96368209531635	4.34570169315684	4.19814735034753	4.33734903502502	0.744298338808752	0.0980829515928941	0.34325416251687
Merged-chr4-133614595-4	chr4	133614469	133614669	+	924.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 3 of 7)	intron (NM_001017968, intron 3 of 7)	-12401.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	6.75877929989854	6.77072679301443	6.77187267777812	6.75596108650373	4.88071271566781	5.20100571459019	4.93328240748142	4.85732429381609	-3.02293870009045	1.43346334806595e-27	1.29155047660742e-24
Merged-chr15-59049024-4	chr15	59048924	59049124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	33002.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	6.45689508856183	6.40581699636056	6.42474617330994	6.36072485902047	6.32327106202447	5.95920120234757	6.40854595353192	6.25844071872835	-0.23024077079384	0.307764752265389	0.620120797755142
Merged-chr3-87332200-4	chr3	87332062	87332262	+	986.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B2|LTR|ERVK	-25719.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	4.56770463249671	4.85843168840266	5.41392546186172	4.86920352261638	5.16069950234316	4.74851715757234	4.79627479618637	4.73769073533822	-0.150187904851154	0.688659377403462	0.872934600557885
Merged-chr13-43775454-4	chr13	43775325	43775525	+	931.145874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9687.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	4.92256852772562	4.77046218620655	5.30414378255484	4.57230947620914	5.59424767105156	5.06281453399497	4.93583184903659	5.02634895882696	0.552847387330369	0.133392550566822	0.406697008343862
Merged-chr5-136199094-4	chr5	136199007	136199207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025774)	promoter-TSS (NM_025774)	-153.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	7.95847927793938	8.23917475101468	7.84790453745784	8.08365398512148	8.16326087404101	8.52148303329405	8.00423435458815	8.16408537256321	0.231449988149434	0.211595949766042	0.516324583764041
Merged-chr3-157925179-4	chr3	157925090	157925290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145953)	promoter-TSS (NM_145953)	-127.0	NM_145953	107869.0	Mm.28301	NM_145953	ENSMUSG00000028179	Cth	0610010I13Rik|AI314617|BC019483|CSE|Cys3	cystathionase (cystathionine gamma-lyase)	protein-coding	5.83515497557739	6.09039451839307	6.37813786723361	6.43958346308678	6.03916543887656	5.6433772715741	6.07487097360909	5.95147803268507	-0.429219727219632	0.109135957497331	0.364788932180249
Merged-chr12-110686995-4	chr12	110686892	110687092	+	875.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-4373.0	NM_025488	66323.0	Mm.273316	NM_025488	ENSMUSG00000056508	1700001K19Rik	-	RIKEN cDNA 1700001K19 gene	protein-coding	4.36340408598519	4.14139054712957	4.32109509860077	4.41699473246333	3.95638329618507	4.15345756151654	4.73570796291469	4.36130333875129	0.0285606449672495	0.946759209406269	0.98095209334417
Merged-chr13-52929642-4	chr13	52929533	52929733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016709)	promoter-TSS (NM_016709)	44.0	NM_016709	11992.0	Mm.252034	NM_016709	ENSMUSG00000021460	Auh	C77140|W91705	AU RNA binding protein/enoyl-coenzyme A hydratase	protein-coding	7.01774750067614	7.09406180121916	6.84194671650192	7.13570862885041	7.31160152680563	7.40556856349132	7.36266612175795	7.03916135398811	0.342719129078649	0.077961423142951	0.301965290193835
Merged-chr4-120825277-4	chr4	120825182	120825382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357194)	promoter-TSS (NM_001357194)	-73.0	NM_001357194	18046.0	Mm.318389	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	6.60697639194089	6.76700534816886	6.76456734449681	6.82165922559892	7.05641661822072	7.06689040801075	7.01702562009681	6.99997127205481	0.398941737528044	0.0362947214867608	0.189469892241008
Merged-chr3-65319477-1	chr3	65319377	65319577	+	910.0	f0_c57.idr	exon (NM_001289450, exon 9 of 15)	exon (NM_001289450, exon 9 of 15)	-16792.0	NR_126080	102637797.0	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA	4.26072026316069	4.45116364297359	4.05866961549171	4.02386144668977	4.46568994853736	4.52530375789225	4.76751474368389	4.30483505009923	0.762629464379674	0.0542590314234659	0.243261914848246
Merged-chr7-28807867-3	chr7	28807742	28807942	+	867.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3048.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	3.43698359625507	3.31300348346667	3.64464369983581	3.37447883873287	3.16068303444521	3.23434791824402	3.804097968994	3.49047930403296	0.00429367168157827	0.99380170515909	0.997702270136287
Merged-chr2-72786031-3	chr2	72785927	72786127	+	995.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102349, intron 5 of 5)	intron (NR_102349, intron 5 of 5)	27690.0	NR_102348	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	3.9187772068321	3.92798611880841	3.85472364854902	3.31488079251945	5.26086521240125	5.19944682623198	4.54386797266488	4.84673407815299	3.01708978278164	5.61824750976843e-12	5.3391353738025e-10
Merged-chr19-4409276-4	chr19	4409186	4409386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-12209.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	5.68807904769538	5.81236823364305	5.55326455713419	5.59247905297687	5.69595984257887	5.70163696185016	5.84995976313921	6.11640899169129	0.305728038971588	0.246359075803902	0.55762669839908
Merged-chr2-21139420-4	chr2	21139319	21139519	+	956.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65946.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	4.69229474151158	4.93440062334014	4.8207354001446	4.51902097553566	5.27645663847349	5.59568034660313	5.34592333662119	5.23052862132104	1.20954609009458	0.000140593660651617	0.00270175922557274
Merged-chr1-43804344-4	chr1	43804248	43804448	+	787.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026430, intron 4 of 14)	Lx8|LINE|L1	23360.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	3.87887989408035	3.68527734791295	3.9270648408726	3.87326604878277	3.90091537181691	3.84329001945414	3.76344174496141	3.82777583941924	-0.0197416975007846	0.964316108465467	0.987309283922085
Merged-chr16-95612197-4	chr16	95612088	95612288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25595.0	NM_001302152	13876.0	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	ETS transcription factor	protein-coding	6.55920521407325	6.67158202204102	6.65263379786188	6.82268173759339	6.36863327709346	6.4723565094017	6.55821251617639	6.14453677740827	-0.432491385204838	0.04853471904574	0.227369538433377
Merged-chr18-60894373-4	chr18	60894280	60894480	+	873.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1O|LTR|ERVL-MaLR	-17860.0	NM_001038499	545260.0	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	3.74915338357161	4.00526805333082	4.30692511033339	3.86723037460558	4.38603633012792	3.99325313873397	4.3658290916835	4.49451136316077	0.846118576369414	0.0498177074673611	0.231133036842627
Merged-chr2-157081987-6	chr2	157081848	157082048	+	954.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2683.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	4.64921066743236	4.61627422018065	4.83165345588807	5.01617357017167	4.6591401977292	4.52112483456544	4.46335719709235	4.48045951302209	-0.56983233530737	0.114597420460049	0.37446310383904
Merged-chr11-60811211-4	chr11	60811087	60811287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009171)	promoter-TSS (NM_009171)	78.0	NM_009171	20425.0	Mm.364956	NM_009171	ENSMUSG00000020534	Shmt1	AI324848|AI385541|C81125|Shmt|mshmt|mshmt1|mshmt2	serine hydroxymethyltransferase 1 (soluble)	protein-coding	7.71546966027391	7.95607470941596	7.85975258078289	7.68943233143966	8.25302764873435	8.1655600046805	7.91549425751351	7.99615696433771	0.371060040983208	0.0323340701218614	0.176050392197963
Merged-chr9-44288299-2	chr9	44288199	44288399	+	814.299988	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138955)	promoter-TSS (NM_138955)	-55.0	NM_138955	192663.0	Mm.101876	NM_138955	ENSMUSG00000032131	Abcg4	6430517O04Rik	ATP binding cassette subfamily G member 4	protein-coding	2.87948945896715	2.88702464298724	2.87985255276693	2.79198772109298	2.54936469676546	2.63054850251532	3.24014228878368	2.99741867013911	0.115382531590587	0.865494603850095	0.949683830603923
Merged-chr8-91411858-3	chr8	91411756	91411956	+	994.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011936, intron 3 of 8)	intron (NM_011936, intron 3 of 8)	98331.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	4.10875898694738	4.06456504168187	4.59859495832781	4.71126286918528	2.99069735157341	3.20300610600406	3.15435316049538	3.16236038784441	-6.50428324763851	1.28948886888324e-09	8.13692625870922e-08
Merged-chr11-79291386-4	chr11	79291299	79291499	+	906.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-36704.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	4.69259821543074	4.35413180145619	3.96889211239075	4.0773377199464	4.43447967314552	4.44657025249656	4.20877922446314	4.22467224272371	0.0988954649891602	0.815931499686414	0.929114885045365
Merged-chr10-122562171-4	chr10	122562089	122562289	+	775.983337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7702.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	4.15923764001115	4.11999039527945	4.49804584476965	4.43118736738044	4.07813155487727	4.13006591462186	4.47665128960178	4.25056296660201	-0.193888864045445	0.635208526034422	0.845633612363053
Merged-chr1-64127016-4	chr1	64126927	64127127	+	896.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5638.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	4.0381512174786	4.49030675232919	4.67163632839203	4.72120505089585	4.34353526237933	4.04911307474895	4.22177895407398	4.03645882271666	-0.813429239900911	0.0578363082543954	0.252491638129905
Merged-chr11-59559807-4	chr11	59559691	59559891	+	857.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 7 of 9)	intron (NR_153314, intron 7 of 9)	11947.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	4.51149085313503	4.70820800504199	4.87378486074006	4.83438984778515	4.44607868543612	4.25255476315046	4.26588645647453	4.55045836890764	-0.798624744219171	0.0316070522649849	0.173338344492593
Merged-chr1-135523267-4	chr1	135523152	135523352	+	902.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 3 of 28)	ORR1E|LTR|ERVL-MaLR	62103.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	3.62227697521265	3.9476393207125	3.68743833853783	3.91675520604479	4.274196582866	4.45697240994164	4.22798121782366	4.28569984104122	1.28863454569089	0.00307901812006992	0.0326327323955415
Merged-chr7-5059657-4	chr7	5059540	5059740	+	883.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290432, exon 5 of 6)	exon (NM_001290432, exon 5 of 6)	-2503.0	NM_133671	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	3.90935006731214	4.22940111398149	3.79854762599228	3.684057544502	4.0223389345222	4.44788538527202	3.89384846245879	4.31604167822841	0.704233694449825	0.123548129683799	0.389840957654186
Merged-chr3-59208190-4	chr3	59208101	59208301	+	905.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028808, exon 2 of 2)	3' UTR (NM_028808, exon 2 of 2)	2681.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	4.39279830712861	4.41774962356746	4.72553960975297	4.2610701148051	4.27251792616591	4.5231874565056	3.98688839185399	4.25753661934681	-0.426279944665155	0.296755190551595	0.608706887647964
Merged-chr15-102405980-7	chr15	102405869	102406069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013672)	promoter-TSS (NM_013672)	-347.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	8.95916832279958	9.16957342304997	8.96054287237078	8.96305067567927	9.24384870227867	9.45145446219193	9.40851029707158	9.29046695941094	0.411581329612449	0.00432758056311343	0.0426284053282384
Merged-chr2-153345674-4	chr2	153345589	153345789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039939)	promoter-TSS (NM_001039939)	121.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	7.88969320707721	7.93663820168585	7.73767417954108	7.44385868800262	8.00190997543618	7.93141155671576	8.05201634832758	7.87118054673474	0.274360063652507	0.13715131780277	0.411824241716235
Merged-chr17-71669698-4	chr17	71669603	71669803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3558.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	5.68987340428774	5.93146771202961	5.79751296788782	6.0021488952226	6.21667440020502	6.28753167867518	6.26574688862728	5.98305748750338	0.496120022221696	0.0419816865320513	0.207615817804828
Merged-chr18-23809020-4	chr18	23808900	23809100	+	970.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	5030.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	4.90601203454814	4.9198957202762	4.79804705573306	4.70910097822122	5.04090251855096	4.58554612736251	4.77543505394485	5.09618443512036	0.144987646945058	0.669578669929004	0.86357079102718
Merged-chr11-75531046-2	chr11	75530946	75531146	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173388)	promoter-TSS (NM_173388)	-648.0	NM_001199284	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	4.03074800117702	3.4570158782128	3.49786734217719	3.02114144875834	3.19364253700714	3.56052470116317	3.24513022153028	3.49582517866932	-0.55784371759445	0.354857492828593	0.661526412499252
Merged-chr7-67307306-4	chr7	67307220	67307420	+	709.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 3 of 11)	intron (NM_001357324, intron 3 of 11)	65538.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	3.89243922168523	3.86475882166784	3.56228167570055	4.13277798991823	3.8124523450003	3.91144833817553	3.61047485421642	4.07145241047497	-0.0916940264735154	0.849390279591184	0.943120119372541
Merged-chr4-148818658-2	chr4	148818558	148818758	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027195, intron 1 of 15)	intron (NM_027195, intron 1 of 15)	14266.0	NM_027195	69743.0	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	3.1824478862062	3.51646625642708	3.29897984250131	3.12279460960386	3.26956468023849	3.23099898297764	3.11031643636736	3.24052482404365	-0.254517203920026	0.64526507549527	0.850810862839743
Merged-chr13-97584355-4	chr13	97584259	97584459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_046157)	TTS (NR_046157)	24359.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	5.87739156675653	5.99245855887956	6.38833861774666	5.95578231693047	5.73018834375193	5.71196379444903	5.82509695265275	5.85072943734156	-0.451469583601408	0.0803124784588708	0.307176888996452
Merged-chr2-117114111-3	chr2	117114032	117114232	+	728.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6939.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	3.65053148437601	3.80362142620082	3.65103315769767	3.86113855825666	3.65739454185464	3.59759851576203	3.4709573643734	3.53976330786611	-0.570549018572069	0.233790813860454	0.543492448306542
Merged-chr3-81058710-4	chr3	81058616	81058816	+	973.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	22300.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	5.06501230301518	4.9534799368523	5.30208331226219	5.30984845752775	5.0137664915596	5.02797744199796	4.71257656384296	4.84997510914711	-0.515861545912426	0.111943766797526	0.369743500552577
Merged-chr1-134458331-4	chr1	134458232	134458432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311136, intron 1 of 11)	intron (NM_001311136, intron 1 of 11)	2801.0	NM_001311136	240756.0	Mm.87398	NM_153128	ENSMUSG00000026455	Klhl12	C3ip1	kelch-like 12	protein-coding	5.83430312865252	6.05077837721694	5.92684143060889	5.84878809005854	5.85091011761437	5.56560053375233	5.85198248769848	6.00783943802352	-0.133333938599575	0.598008172687447	0.825699282724289
Merged-chr9-114785551-4	chr9	114785460	114785660	+	954.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-3567.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	5.48224053587105	5.29797216451033	5.31693654253129	5.35820090787831	5.40193801950338	4.86392697956691	5.48100993057254	5.08713287507031	-0.219308729077813	0.479048866656749	0.754876095045917
Merged-chr10-96274188-4	chr10	96274104	96274304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47997.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	5.7336524904	5.94817708569332	5.73465821714242	6.00283358879329	5.50439852159124	5.45093239273745	5.52419656857137	5.54812314400695	-0.613049253665809	0.0191387684271366	0.124250127496822
Merged-chr2-159843478-4	chr2	159843367	159843567	+	929.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103874.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	4.04597321015632	3.66719566785346	3.57843979743432	4.09900977036928	4.1450720049702	3.81633529364745	3.93921974032002	3.75184501808976	0.139587979721049	0.773393841219975	0.911353556456469
Merged-chr3-51270615-4	chr3	51270518	51270718	+	959.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 4 of 9)	intron (NM_023502, intron 4 of 9)	-6143.0	NR_073429	67746.0	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	4.54623088508419	4.42524588783867	4.6253962879449	4.4139488213926	4.7272976447863	4.35516948264117	4.67680791175635	4.58379831280618	0.234345567103834	0.515657741984952	0.777658847799081
Merged-chr8-46617965-4	chr8	46617863	46618063	+	926.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151680)	promoter-TSS (NR_151680)	672.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	4.93359893144449	4.41609615295377	4.86985625614628	4.50924310977093	4.54178574766305	4.47437459244828	4.77853005602487	4.76305019410039	-0.0921013886808033	0.804332580846857	0.924725235367916
Merged-chr6-73221766-4	chr6	73221671	73221871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164669)	promoter-TSS (NM_001164669)	-140.0	NM_001164669	330355.0	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	7.07967780234847	7.2998647653269	6.74536057451559	7.0567769096983	7.13837568990532	6.81125997549623	7.10257701117855	6.96524048919145	-0.0649838932275974	0.757002641858655	0.904554066545557
Merged-chr8-40994080-4	chr8	40993927	40994127	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 13 of 13)	B1_Mus1|SINE|Alu	-23441.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	5.84908791494726	5.80286574312295	5.82904494141167	5.85599590835368	4.77705481709425	5.1272713602151	5.11377646237566	5.42820579116193	-1.26958400600836	1.91728202344621e-05	0.0004900187330229
Merged-chr9-21165219-4	chr9	21165123	21165323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183408)	promoter-TSS (NM_183408)	-491.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	6.6652099853946	6.26075568568203	6.43404326021557	6.63792585790915	6.87608031570444	6.84259632189072	6.7475891296185	6.87038486826966	0.456679263181788	0.0310706168471481	0.171322568457696
Merged-chr4-133056717-4	chr4	133056576	133056776	+	786.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146155, intron 3 of 6)	intron (NM_146155, intron 3 of 6)	45170.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	3.95057398987199	4.16738778676841	4.08989663571838	3.73281442718622	3.8098391921192	3.91622194829938	3.93436613119423	3.94880696321856	-0.234035462889785	0.599884617854036	0.826616767892885
Merged-chr19-40587207-4	chr19	40587097	40587297	+	969.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153554, intron 1 of 18)	intron (NM_153554, intron 1 of 18)	1266.0	NM_019698	56454.0	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	4.959971872177	5.23443683100182	5.43501006173885	5.55884635593244	5.46845183137208	5.14280011935021	5.70651026212485	5.81775681864567	0.396593905764629	0.219223391163449	0.526720734502047
Merged-chr1-78488785-4	chr1	78488694	78488894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_102757, exon 1 of 17)	non-coding (NR_102757, exon 1 of 17)	103.0	NR_102758	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	7.02849422233271	7.41640400542318	7.49035070152793	7.11502958876284	6.8859828282944	6.96084277222494	7.13491628714189	6.76568124020417	-0.456523140801028	0.0300321844775665	0.167410201184799
Merged-chr13-102899452-4	chr13	102899362	102899562	+	979.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	139207.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	5.45718916069014	4.88046274336538	5.51249031556867	5.77343399430791	5.70799482001968	4.96649716931286	5.18844538093187	5.7495475269822	-0.00257153299964114	0.994382566436513	0.997969705205021
Merged-chr9-108290370-4	chr9	108290261	108290461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025449)	promoter-TSS (NM_025449)	-96.0	NM_025449	66257.0	Mm.10407	NM_025449	ENSMUSG00000032606	Nicn1	1500032A17Rik	nicolin 1	protein-coding	6.85119965429718	7.07675976315593	7.07480125338012	7.14174146385558	7.18383936478543	7.04411247428219	7.417420425004	6.90349276755839	0.146113047039642	0.475110984123037	0.752077675107718
Merged-chr16-25011146-4	chr16	25011047	25011247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48492.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	6.46454521369874	6.68131625244855	6.51579458789087	6.45192796973164	6.61442271285971	6.49826398953569	6.25056588421038	6.47798349455013	-0.0808185804154625	0.710921262707036	0.884240356833917
Merged-chr16-17646446-4	chr16	17646338	17646538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166164)	promoter-TSS (NM_001166164)	-32.0	NM_001166164	72315.0	Mm.297777	NM_001166164	ENSMUSG00000041617	Ccdc74a	2310015A05Rik	coiled-coil domain containing 74A	protein-coding	7.53515575955203	7.51994529492818	7.36711576132526	7.89590143115818	7.23045133847621	7.01841098201917	7.3797641190523	7.19015872770315	-0.532271473453988	0.00913052778221973	0.0739280897520894
Merged-chr8-36994373-4	chr8	36994286	36994486	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039220, exon 1 of 1)	exon (NM_001039220, exon 1 of 1)	811.0	NM_001039220	621080.0	Mm.373292	NM_001039220	ENSMUSG00000074384	AI429214	-	expressed sequence AI429214	protein-coding	5.98531992109016	5.63947224710394	6.1143895715832	6.49962406294172	5.0146451596206	4.90445799359414	5.04173423802151	4.75684848318753	-2.05588413760502	4.66712380974813e-10	3.1789589057805e-08
Merged-chr7-129307176-4	chr7	129307106	129307306	+	770.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080963, intron 1 of 6)	intron (NM_001080963, intron 1 of 6)	50112.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	3.84668913992345	3.73934747191196	3.69103969357145	3.66536820928728	3.68732242913153	4.06408133705228	3.73012718047018	3.8930031823142	0.332263855764867	0.464613690676682	0.745523090592339
Merged-chr9-3199771-3	chr9	3199652	3199852	+	821.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027988)	promoter-TSS (NR_027988)	61.0	NR_027988	114673.0	Mm.422774	NM_053265	ENSMUSG00000042360	4930433N12Rik	-	RIKEN cDNA 4930433N12 gene	ncRNA	4.76380518452434	4.897267653088	4.23029014637871	4.42600701343616	3.44790374738401	3.60787194905344	3.47096337430708	3.8165648145525	-2.97947581549658	2.45163385712912e-08	1.20348169873513e-06
Merged-chr1-134079190-4	chr1	134079107	134079307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007570)	promoter-TSS (NM_007570)	-52.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	8.97153316745074	8.99627664277743	9.01865132134209	8.68723571278137	9.01182132228291	9.07328216358542	9.0555037278727	8.76552781422493	0.0776051992024089	0.628444435820796	0.841555602537691
Merged-chr15-63545854-4	chr15	63545716	63545916	+	961.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-66208.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	4.68188073016823	4.6267106346471	5.07256366869326	5.18484223019637	4.96713938178607	4.77454844640343	4.85151466840837	4.72037345305515	-0.18668786139136	0.599259733653505	0.826297287085189
Merged-chr13-38635110-4	chr13	38635017	38635217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139063)	promoter-TSS (NM_139063)	-8.0	NM_139063	17828.0	Mm.261554	NM_139063	ENSMUSG00000038982	Bloc1s5	1810074A19Rik|Muted|mu	biogenesis of lysosomal organelles complex-1, subunit 5, muted	protein-coding	6.70902974528766	6.591772399103	6.69520801572159	6.71537516830578	6.92939664929931	6.77801294245721	6.85559012951242	6.79185251193973	0.233497368164157	0.231629063230153	0.541195462875407
Merged-chr7-71875460-3	chr7	71875365	71875565	+	868.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-34230.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	4.10858006317707	3.93220720104108	4.56406179434136	4.8724042544079	3.34471753216181	3.74363202531639	3.66906028475442	3.48060942014748	-2.55955639443092	3.17393858771683e-06	9.9173737811719e-05
Merged-chr16-95648043-4	chr16	95647963	95648163	+	762.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54344.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	3.43889307811194	3.46460626236821	3.4953973197617	3.4254952283725	3.68812364838734	3.29897355837539	3.63465197093829	3.64789194674797	0.423737639732792	0.392251576136078	0.691857527785958
Merged-chr6-38950520-4	chr6	38950408	38950608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 2 of 12)	intron (NM_011539, intron 2 of 12)	31522.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	5.33525472195198	5.70320499017492	5.43412605587583	6.11095468404386	5.99936852632207	5.70269451656297	5.93611499169277	5.80867421700842	0.261162900061523	0.391046848507005	0.690939565734194
Merged-chr9-107713613-4	chr9	107713517	107713717	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3142.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	5.54686495060571	5.81267802694078	5.4671377977311	4.91995167733337	5.43261520764062	5.36730825402607	5.73317683281619	5.11454975981142	-0.0587261337116426	0.864118102386892	0.948954560889149
Merged-chr4-133353598-4	chr4	133353483	133353683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14268.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	5.53642819395774	6.01877278878665	5.35898013855765	5.41111103305122	5.7590648771388	5.65599787313169	5.76109807397115	5.66627549465009	0.180597854209045	0.533069718663083	0.788433652046121
Merged-chr3-90111852-4	chr3	90111754	90111954	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029937, intron 2 of 39)	intron (NM_029937, intron 2 of 39)	7722.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	5.08612873446164	4.96497781936342	4.88215996455792	5.32202546022424	4.35386827627034	4.63234420625318	5.38965489905555	4.91534152865425	-0.4000339918028	0.312417936298635	0.624388496077511
Merged-chr2-159811855-4	chr2	159811741	159811941	+	886.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135500.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	4.80636320191886	4.36685818997867	4.26482719047475	4.38905129676048	4.50980497862783	4.392904159352	4.5807013362038	4.21318639852201	-0.0737609151036745	0.850567664956493	0.943633424218446
Merged-chr17-13945430-4	chr17	13945301	13945501	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2972.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	6.16363476664146	5.49580274229729	6.48016575795381	6.30897518337515	5.84615311310342	5.12484297896002	6.1880258166716	5.99938953091268	-0.492176218804665	0.156351038540996	0.442219656874513
Merged-chr17-25785416-4	chr17	25785323	25785523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026897)	promoter-TSS (NM_026897)	-85.0	NM_026897	68977.0	Mm.29230	NM_026897	ENSMUSG00000061046	Haghl	1500017E18Rik|2810014I23Rik|C330022E15Rik	hydroxyacylglutathione hydrolase-like	protein-coding	6.1685861873366	6.06592569757503	6.33477659314379	5.92705085509362	5.96842094215579	6.47413820337396	5.85506746344081	6.16525864244845	0.0138206031505471	0.95769594151789	0.984870901124062
Merged-chr9-103230449-4	chr9	103230330	103230530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133977)	promoter-TSS (NM_133977)	-144.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	7.41886625273291	6.98317132141477	7.5957768096438	7.63521096524642	7.04979027747545	7.12199704651504	7.16840088446079	7.11850024757817	-0.439673504807575	0.0372492415725693	0.192532406208257
Merged-chr2-27405173-7	chr2	27405052	27405252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	22456.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	5.16395265199838	5.56308459312049	5.61929916416989	4.70848735641091	5.08792580593609	5.05711709680855	4.9687258713744	5.12868586279686	-0.445874266634001	0.217817525921305	0.524748202531498
Merged-chr2-127831929-4	chr2	127831834	127832034	+	981.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113179)	promoter-TSS (NM_001113179)	-75.0	NM_009772	12235.0	Mm.2185	NM_009772	ENSMUSG00000027379	Bub1	AL022991|Bub1a|C80208|D2Xrf87	BUB1, mitotic checkpoint serine/threonine kinase	protein-coding	5.03142542712162	4.71016986087103	4.46036538946879	4.91965282914608	5.24639425020098	4.99313012706487	5.16143709531364	5.18374866480572	0.673297232833396	0.0432017251156299	0.211533025521457
Merged-chr2-33329114-2	chr2	33329014	33329214	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175211, intron 3 of 19)	intron (NM_175211, intron 3 of 19)	42380.0	NM_001290570	241308.0	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	2.61980431264959	2.89915368396777	2.76314883446347	2.67793071167482	3.08379382199979	2.93712043220278	2.9413441246146	3.06324710797486	1.19912751323753	0.0488903411508563	0.228614215791407
Merged-chr9-108474769-3	chr9	108474683	108474883	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5079.0	NM_008483	16779.0	Mm.27560	NM_008483	ENSMUSG00000052911	Lamb2	AW211941|Lamb-2|Lams|npht	laminin, beta 2	protein-coding	4.21365239705513	4.24603695175713	3.87620799276176	3.95088668816712	3.8814517649327	4.42432029331011	3.96548407217098	3.9797889914293	-0.00881210433573122	0.984154469626742	0.994237242628259
Merged-chr1-154104388-4	chr1	154104285	154104485	+	981.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-96802.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	5.05883025495466	4.64714035301051	4.86170450363386	5.1395537103658	4.97121574079107	4.41735493901806	4.76559294658672	4.82225392489921	-0.364094351239973	0.31395803560055	0.625990056192373
Merged-chr4-132944922-4	chr4	132944786	132944986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MARNA|DNA|TcMar-Mariner	-22335.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	5.75784146887966	5.56909683439138	5.86708673644795	5.5919129532265	5.48318878103439	5.19240440196411	5.42567542224645	5.26334227472097	-0.58304869396568	0.0380334640871729	0.195253078994654
Merged-chr1-59464833-3	chr1	59464736	59464936	+	749.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17311.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	4.18340666505532	3.81062087458765	4.14481434966294	4.07693363880848	3.49020639617955	3.78459056883761	3.53127775685355	3.66301571970834	-1.33763951075219	0.00505862931946536	0.0479214034338571
Merged-chr11-52396694-7	chr11	52396660	52396860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153117, intron 1 of 2)	CpG	332.0	NM_153117	213673.0	Mm.291979	NM_153117	ENSMUSG00000036275	9530068E07Rik	C85061|Kct2	RIKEN cDNA 9530068E07 gene	protein-coding	5.64195783677755	5.9683240504812	5.37408026938684	5.25526243157972	6.00567146539074	6.06177521907412	5.78918767504012	6.04942149937134	0.656778362332635	0.0225136461211438	0.138588499287113
Merged-chr6-134036873-6	chr6	134036740	134036940	+	807.972229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	1140.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	3.10306724701705	3.43348289956735	2.96587601146023	2.81717634196603	3.22662755241782	3.40207791016808	3.43201213263836	3.44513551203941	1.04779993836063	0.0738927304255473	0.292883988136765
Merged-chr17-74711017-4	chr17	74710931	74711131	+	939.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6719.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	4.60884323795059	5.04774112648342	4.60959100285143	4.4698237827485	6.45287524238674	6.55889929547394	6.05013348669291	6.66829169930101	2.98201922389614	1.0805208519495e-22	5.02682311901396e-20
Merged-chr2-163804432-3	chr2	163804331	163804531	+	761.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16403.0	NM_016873	22403.0	Mm.13828	NM_016873	ENSMUSG00000027656	Wisp2	Ccn5|Crgr4|Ctgfl|Rcop1	WNT1 inducible signaling pathway protein 2	protein-coding	3.32831531513013	3.32811407523376	3.69827844929542	2.67333166765553	2.86699286250146	3.00162928575588	3.14487210282718	3.02777098320543	-1.13808087594876	0.0925886563268787	0.332830057506737
Merged-chr19-40993555-4	chr19	40993449	40993649	+	870.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008528, intron 1 of 16)	RSINE1|SINE|B4	986.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	4.31182116030501	4.20506888121421	4.22512838256562	4.85622310401171	4.12878766215025	3.98554546797509	3.84838124401179	4.22251324580584	-0.97475935708095	0.0306968714887955	0.169878138368914
Merged-chr3-22091945-4	chr3	22091851	22092051	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	RLTR23|LTR|ERV1	15299.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.25535224703751	4.47384714862795	4.42907537724733	4.55884528565115	4.35697320957671	4.18043199161971	4.40877971875523	4.10664838309292	-0.404259586644796	0.299026514477048	0.611311162969898
Merged-chr3-103913484-4	chr3	103913381	103913581	+	907.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356556)	promoter-TSS (NM_001356556)	-639.0	NM_001356557	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	4.83816799338702	4.68367049583351	4.44549510806631	4.98099276028607	4.60757868354342	4.5761620328679	4.5559165954276	4.65433225327703	-0.363618883514659	0.313180671194792	0.625137156187603
Merged-chr14-61683069-2	chr14	61682969	61683169	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028264)	promoter-TSS (NR_028264)	-696.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	4.59793093232206	4.47342118225876	4.82197061790331	4.24688607809465	4.64921507085045	4.81179912198367	4.69273398923067	4.78414386001294	0.438435633907713	0.231123193924135	0.540647495139858
Merged-chr2-78995328-4	chr2	78995222	78995422	+	992.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125644.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	5.63956193773299	5.35220320242076	5.99197339727899	5.79451868579322	5.66582245098671	5.13753293314258	5.58651948506683	5.44542390509268	-0.393372894532545	0.193343314446486	0.493529716199714
Merged-chr2-38481963-4	chr2	38481860	38482060	+	851.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1C|DNA|hAT-Tip100	-29737.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	3.73982003273726	3.3932262719968	3.84350726252462	4.04006615613176	3.55876502844666	3.74797667968468	3.61455744385745	4.3276284688713	0.194205260815169	0.719238899312567	0.887855791496547
Merged-chr9-78443237-4	chr9	78443141	78443341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173386)	promoter-TSS (NM_173386)	-4.0	NM_173386	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	7.01122625194709	7.39117378405004	7.14738741151669	7.29422669574686	7.26593144578406	7.55696637096486	7.31554371778771	7.10691498261816	0.125583579997489	0.527202975134313	0.784221449229593
Merged-chr10-96185855-4	chr10	96185746	96185946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40361.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	5.7777236044555	5.84370547431026	5.68319327340954	5.60100047344685	5.27115357895832	5.52178859575132	5.74928367577894	5.49244915584577	-0.360969672338544	0.191086941521332	0.490417410029363
Merged-chr2-5116455-4	chr2	5116365	5116565	+	991.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21311.0	NM_028804	74186.0	Mm.274715	NM_028804	ENSMUSG00000026676	Ccdc3	2310045O21Rik	coiled-coil domain containing 3	protein-coding	5.3336661146822	5.39445342663229	5.27106968435512	5.35949732909442	5.70601663735099	5.70794297103174	5.6317757750108	5.23452351577142	0.426960820445027	0.129856997560926	0.401141013340386
Merged-chr12-73905198-3	chr12	73905106	73905306	+	909.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313920, intron 1 of 14)	intron (NM_001313920, intron 1 of 14)	-2661.0	NM_010431	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	3.81824678849275	3.58013425092962	4.00029250979966	3.86623410401157	3.63352124827005	3.78125805243285	3.64912150972012	3.66133697066944	-0.437667330651678	0.349111215141923	0.656765556493198
Merged-chr14-13971875-3	chr14	13971819	13972019	+	845.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10067.0	NM_001359901	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	3.34263979516433	3.06163271380349	3.60819807850976	3.21068337537336	3.39300361408242	3.51650048218362	3.27109076798003	3.65283804427425	0.519840330618496	0.340445991980592	0.649580626274939
Merged-chr12-119372560-4	chr12	119372454	119372654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70856.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	6.45882592877488	6.63196074452549	6.84827397017399	6.71649278992592	6.54835706104725	6.79971180771991	6.51112444300524	6.1392073397573	-0.222881700884191	0.339978918873612	0.649037400201283
Merged-chr8-46794131-2	chr8	46794031	46794231	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 2 of 7)	intron (NR_152560, intron 2 of 7)	54386.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	3.16971825773328	2.94910254865737	2.7751449579254	2.95268460571198	2.87470138378463	3.34040672499856	3.21241428664295	3.32849360019908	0.908588999407052	0.132940513522333	0.406097877964367
Merged-chr4-99194148-4	chr4	99194020	99194220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145967)	promoter-TSS (NM_001145967)	-27.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	6.78878166712572	6.22604273627711	6.58454441243799	6.48646317675781	6.55515071654986	6.85252530972005	6.550900358271	6.79859634157404	0.232215971227893	0.307839056776261	0.620200289337036
Merged-chr17-56479550-4	chr17	56479438	56479638	+	774.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3058.0	NM_011218	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	4.03300595207664	3.82766040345235	3.75340471713355	3.9299418600282	3.60799428979716	3.87202212195214	3.63088881004092	3.75131277685969	-0.534357153893711	0.243803375635431	0.554820655871679
Merged-chr9-88959152-3	chr9	88959046	88959246	+	605.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009742, intron 1 of 1)	intron (NM_009742, intron 1 of 1)	2226.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	3.32373463394309	3.1545386012486	3.32417172985991	2.91374681172596	3.66106947094237	3.31414084290949	3.52654642484032	3.6361801087607	1.32567044567808	0.0148788139228874	0.10421758474879
Merged-chr2-158146400-4	chr2	158146293	158146493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009373)	promoter-TSS (NM_009373)	-1.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	7.00530915457736	7.62585270472889	7.45989651891971	7.18154846277222	7.53943908741133	7.19779894416805	7.58731537841155	7.12810538885627	0.0611146634007224	0.782943408854273	0.915438160534164
Merged-chr2-27757242-2	chr2	27757142	27757342	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 8 of 9)	intron (NM_001290481, intron 8 of 9)	46659.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	3.17861617752606	3.31368847911473	3.11722213546936	3.41735911752392	3.10744641078564	3.22676970365222	3.16787901789565	3.39815605456701	-0.173299282348172	0.754438232192375	0.903310665426823
Merged-chr18-67449327-4	chr18	67449225	67449425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027130)	promoter-TSS (NM_027130)	-189.0	NM_027130	69597.0	Mm.426052	NM_027130	ENSMUSG00000024527	Afg3l2	2310036I02Rik|AW260507|Emv66|par	AFG3-like AAA ATPase 2	protein-coding	8.64766786619482	8.72530063396783	8.38298577402392	8.01231902608377	8.72166572795422	8.78275428168078	8.49094994847781	8.22886280882065	0.136905550691733	0.51926741402936	0.779947567224373
Merged-chr5-77013372-4	chr5	77013278	77013478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_077218, intron 2 of 3)	intron (NR_077218, intron 2 of 3)	-2645.0	NM_027970	71868.0	Mm.151092	NM_027970	ENSMUSG00000029248	Thegl	1700023E05Rik	theg spermatid protein like	protein-coding	6.93400031674963	6.90806879038576	6.68644570178264	6.90984090291752	6.73607269514504	6.45401900639928	6.84914794943252	6.7558409563481	-0.221635710797533	0.282090690272463	0.594254538219845
Merged-chr13-106690253-2	chr13	106690153	106690353	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	246705.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	3.51091652136646	3.556202215295	3.45601963747956	3.10395697761131	3.21235066304334	3.62942884200456	3.73989676666986	3.45410578584581	0.367113702217131	0.500400277388509	0.768850577358824
Merged-chr5-139465104-4	chr5	139464998	139465198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4564.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	5.56900971546961	5.30842649659096	5.01507286327197	5.24822978390024	5.40739616665296	5.26840906191998	5.2655058371867	5.81380859074727	0.288009958681782	0.354916009781191	0.661579026385505
Merged-chr4-155235455-4	chr4	155235369	155235569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12934.0	NM_001357191	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	6.44070135847055	6.08916584598685	5.58990895954616	6.08969636034708	6.12432890883129	6.39128553399038	6.37676433410175	6.02788128226351	0.228009462724457	0.399983130957008	0.698016583884129
Merged-chr9-70542744-4	chr9	70542627	70542827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025690)	promoter-TSS (NM_025690)	12.0	NM_025690	66660.0	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	8.01368741550068	7.89146015914726	7.81611658051113	7.47025211772041	8.02558774236036	8.0315535640902	8.10709274861856	7.74767539638432	0.237073321636979	0.2180955701393	0.525127683747555
Merged-chr11-69689228-4	chr11	69689123	69689323	+	794.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011614, intron 5 of 6)	intron (NM_011614, intron 5 of 6)	-3669.0	NM_023517	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	3.74246272898344	3.36446467140491	3.37334691906694	3.33891480682532	3.44555933009558	3.35882516070086	3.77061960405907	3.64565813419872	0.348130634297551	0.500730957706806	0.76900937297172
Merged-chr2-173770852-2	chr2	173770767	173770967	+	808.875	f0_balb.idr|f0_c57.idr	intron (NM_019806, intron 2 of 5)	intron (NM_019806, intron 2 of 5)	33296.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	4.26278300321667	4.52891563486352	4.35706988781626	4.21503424376246	4.22012675905089	4.44041347505953	4.75312353927095	4.74065126183526	0.480890568011013	0.220168012818666	0.527992284101607
Merged-chr13-28958659-6	chr13	28958548	28958748	+	877.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4949.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	4.91104040062726	4.43521595140733	4.8487720838004	4.90928033749546	4.28410318491256	4.31203696146227	4.21886662796679	4.59568290731822	-0.977188832303308	0.0108881200147237	0.0838994857710797
Merged-chr15-38259446-4	chr15	38259347	38259547	+	989.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	40244.0	NM_008757	18285.0	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	5.21600072634968	5.51676287501764	6.02708998196266	5.82162769273503	6.33512697258076	6.04516710732061	6.6349155673309	6.49973458414575	1.09948535784455	0.000152371222997922	0.00288908664937909
Merged-chr1-156559357-4	chr1	156559273	156559473	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	CpG	586.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	4.68719071690005	4.67045519405742	4.96096271717342	4.42171539539725	5.01351348068532	5.20343994288939	5.27161508847498	5.42253086724897	1.08943591416106	0.00114455700687961	0.0150061564178824
Merged-chr19-18600434-3	chr19	18600333	18600533	+	782.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 2 of 9)	intron (NM_017375, intron 2 of 9)	31380.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	3.57698018078274	3.34559375142641	3.96094657492754	4.19548036874295	3.46234582821785	3.37861803305114	3.76699497502193	3.33132676761042	-1.00691896583827	0.0776638307368585	0.301386643115192
Merged-chr5-122268198-4	chr5	122268085	122268285	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3725.0	NM_001039153	654470.0	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	4.74712962312044	4.64521814344069	4.82376785073874	4.90633009639914	4.81967461323709	5.10095453756963	4.56078991002674	5.05488745299082	0.211897833829577	0.538904489440614	0.791863971715973
Merged-chr16-38679587-5	chr16	38679561	38679761	+	955.080017	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	33374.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	4.73060232490531	4.93240038667941	4.61245991699224	4.84627162354408	4.5985200420535	4.65849200349023	4.6711218668084	4.80169254497771	-0.238809492175755	0.482635074330159	0.757421686487144
Merged-chr1-43936132-3	chr1	43936040	43936240	+	617.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009418, intron 1 of 29)	intron (NM_009418, intron 1 of 29)	2146.0	NM_009418	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	3.2154215184407	2.95039112474779	2.97614939446621	3.27325416126874	3.30116901642076	3.14766475931324	3.14832980473307	3.09989769860436	0.232516302998977	0.686246915057357	0.871787672169905
Merged-chr1-127135501-3	chr1	127135423	127135623	+	937.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69463.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	4.32168736865827	4.24950593660037	4.55389028428237	4.7021440596091	3.79204413145241	3.93306101766862	4.21587453359639	4.13813170898965	-1.15474035862051	0.00724171617746629	0.0624343648008567
Merged-chr6-72152822-4	chr6	72152684	72152884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 6 of 6)	intron (NM_001035228, intron 6 of 6)	-29587.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	6.63763587200497	6.19775235117244	7.38048175563994	7.46200743613172	6.04812880713116	6.01769173246908	6.6045825874029	6.28321984371276	-1.10377912765053	0.000621634117783778	0.00919028470882333
Merged-chr18-62227773-4	chr18	62227698	62227898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47698.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	6.14420178729282	6.62946958664378	5.81985640780079	5.94054647031786	5.75357811311198	5.86830259352695	5.88488490523164	5.57142214112898	-0.628670922130365	0.0295430349379643	0.165542257431915
Merged-chr1-80340924-4	chr1	80340842	80341042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313728)	promoter-TSS (NM_001313728)	-252.0	NM_016716	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	7.93580061502634	7.90541102722444	7.97167647714504	7.36877171808801	8.02314552861466	8.13548487804879	7.99313428705443	7.88902751553982	0.26794761514163	0.175873361352036	0.470708403371934
Merged-chr3-96098315-4	chr3	96098226	96098426	+	822.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6201.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	3.81926027788113	3.48793888966541	3.25628521794576	3.53611978945411	3.806534872886	3.84446127468724	3.70909614333032	3.45016219751806	0.539837378561773	0.288235684179126	0.60028251087905
Merged-chr19-44562810-4	chr19	44562748	44562948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176958)	promoter-TSS (NM_176958)	-6.0	NM_176958	319594.0	Mm.145278	NM_176958	ENSMUSG00000036450	Hif1an	2310046M24Rik|A830014H24Rik|FIH|FIH1	hypoxia-inducible factor 1, alpha subunit inhibitor	protein-coding	6.37181539440809	6.63501099035079	6.46345613946765	6.62177096274734	6.64306643913138	6.64006207806067	6.73734950609219	6.62235571426024	0.177349860205763	0.391875828740422	0.691574667597334
Merged-chr5-120613004-4	chr5	120612903	120613103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028041)	promoter-TSS (NM_028041)	-127.0	NM_028041	71990.0	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	9.12197520877069	9.28501242144003	8.77300407237091	8.72759341109489	9.0122036512112	9.20231395689703	8.86122352867546	8.67568722416886	-0.0546747089839889	0.777814069676327	0.913396205812139
Merged-chr11-48913803-4	chr11	48913707	48913907	+	860.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045540, intron 2 of 2)	intron (NM_001045540, intron 2 of 2)	-11655.0	NM_001024230	432555.0	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	4.35224364778272	4.08828379611431	3.83231405852314	3.95599393069392	4.02750965831938	4.66591587910259	4.02898258716146	3.77103199622533	0.244332748983532	0.608520618542509	0.830675049522223
Merged-chr1-43911988-4	chr1	43911870	43912070	+	845.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22024.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	3.53531295990266	3.61397211077383	3.75675729346869	3.85582330371986	3.65113897376543	3.52465739009253	3.88339254277704	4.02713911209724	0.232816778188953	0.632361186931188	0.843863531835525
Merged-chr4-141538003-4	chr4	141537808	141538008	+	882.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 1 of 14)	CpG	689.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	3.9893776468118	4.05870801645871	3.98997422389315	3.79280250915775	3.93390222044994	4.01387308965144	3.82563657451829	3.83890007371928	-0.128046488480743	0.768441405403429	0.909356419531329
Merged-chr7-90476857-1	chr7	90476757	90476957	+	812.5	f0_balb.idr	promoter-TSS (NM_026734)	promoter-TSS (NM_026734)	-862.0	NM_026734	68472.0	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	3.40839730065458	3.44662434991413	4.02486105704871	3.72734620636812	3.44714381294519	3.46101518278851	3.33525445731961	3.57768597420886	-0.708933574211247	0.179818845301587	0.476076830564317
Merged-chr7-137404874-2	chr7	137404774	137404974	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029886, intron 1 of 3)	RMER5|LTR|ERV1	5882.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	2.81340728111778	2.54444702993534	2.53696030043661	2.63790646958971	2.76540730598582	3.04405767108624	2.92109872482198	2.93145306007461	1.29499100192193	0.0429691975957796	0.210913016926852
Merged-chr10-99266142-5	chr10	99266119	99266319	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026268, exon 3 of 3)	exon (NM_026268, exon 3 of 3)	2988.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	4.61382792996818	4.58246422416348	4.69080647560967	4.73758738485998	4.24800407627385	4.82449320215167	4.55355052237869	4.48810135395106	-0.287107932954981	0.437057104202691	0.725451385050576
Merged-chr4-132803748-3	chr4	132803644	132803844	+	808.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-7380.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	3.29255805329094	3.45855872327753	3.09785641623755	2.57249606504009	3.66315692517435	3.63598166935584	3.39468780209178	3.40702483575225	1.31453009903904	0.0486719298511219	0.22783230664922
Merged-chr8-40647960-4	chr8	40647880	40648080	+	895.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-13188.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	4.62751220371534	4.39137642010111	4.87315665460341	4.846600426811	5.12199853948705	4.67109312617816	5.49781488459919	5.3825788590618	0.973961695680657	0.0085371912586813	0.070323890360106
Merged-chr5-74951513-4	chr5	74951416	74951616	+	869.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045866, intron 1 of 4)	intron (NR_045866, intron 1 of 4)	2322.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	4.22940177747167	4.19993742738765	4.37766495116756	4.96722816252468	4.48720629782667	4.55436969993347	4.9397886239006	4.66537715757537	0.352009397110214	0.414711929299357	0.709144904739707
Merged-chr11-102246450-4	chr11	102246345	102246545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2437.0	NM_153544	217216.0	Mm.247335	NM_153544	ENSMUSG00000034773	BC030867	-	cDNA sequence BC030867	protein-coding	5.73900202704002	5.60261207341909	6.13929283247958	5.7366820272744	5.5969945100881	5.75864577686908	5.66074590688712	5.78445209117832	-0.188791664463836	0.48240693475616	0.75723418393445
Merged-chr14-63436493-4	chr14	63436383	63436583	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177628)	promoter-TSS (NM_177628)	89.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	5.93525058117447	5.98351271907346	5.73088630895258	5.69723481573109	5.79085212526672	5.95382533795292	5.2997996098745	5.45134092112984	-0.30310198120903	0.288846794178745	0.600813149118904
Merged-chr17-35232241-4	chr17	35232127	35232327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010909, intron 2 of 3)	intron (NM_010909, intron 2 of 3)	-2783.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	5.68155464831063	5.91339852514376	5.23501931298224	5.23755276727045	5.2699139939902	5.53822243035159	5.27415196051457	5.44661608455861	-0.280633450691936	0.376087789589248	0.678936009694858
Merged-chr18-66461175-4	chr18	66461049	66461249	+	801.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021451, intron 2 of 2)	intron (NM_021451, intron 2 of 2)	2545.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	3.6284219748848	3.80635402642845	3.46470326391426	3.21000931716699	3.61605357590289	3.69417530983473	3.45168597812004	3.51985807308756	0.11841927639625	0.820954077630065	0.931443689364036
Merged-chr7-142386835-4	chr7	142386737	142386937	+	915.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009983, intron 1 of 8)	intron (NM_009983, intron 1 of 8)	1033.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	3.53384335993587	3.53610652949414	4.43008361123716	3.78501908169692	3.87875368896267	3.95895968310748	3.9220692944914	4.3574719831946	0.454553528873635	0.386362294752282	0.687552275421561
Merged-chr4-95047205-6	chr4	95047151	95047351	+	732.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4971.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	3.85563096200269	4.32933869096084	3.90626770442488	3.79327639705618	3.90118774866925	3.75321486794141	3.42945256788567	4.04316259947288	-0.51491135034615	0.303552168282707	0.616171939285553
Merged-chr15-96722462-4	chr15	96722365	96722565	+	839.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_Mus|LTR|ERVK	-22737.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	3.9727183655651	4.00825125867298	3.72939561800178	3.83785663170159	4.70631671128803	4.72162406248639	4.56484197378972	4.26997871309514	1.69021204335345	2.97800562739057e-05	0.000721973646294392
Merged-chr15-61985280-7	chr15	61985198	61985398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010849)	promoter-TSS (NM_010849)	-43.0	NM_001177354	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	5.75022215788415	6.05396303799947	6.36065824043571	5.94694574569283	4.91191770689455	5.54556479657462	4.88673405739732	5.36144043788634	-1.45241598827147	5.00609581332512e-06	0.000148100122151566
Merged-chr8-53626323-4	chr8	53626257	53626457	+	975.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146208, intron 1 of 9)	intron (NM_146208, intron 1 of 9)	12708.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	4.66273330957059	4.94769341199671	4.83547477565288	4.85956339922433	5.5788958816017	5.23236613379249	5.52751114823113	4.98421334850927	0.991214256378936	0.00226814518919445	0.0257815883777822
Merged-chr1-74308820-4	chr1	74308735	74308935	+	990.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039509, intron 2 of 9)	RMER2|LTR|ERV1	-4499.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	5.69826694033446	5.7245908088972	5.07732405838086	5.16061020699156	5.47379688771064	5.18203454206204	5.22188597425563	5.14471881622314	-0.305088074202609	0.354045304411327	0.660831376621657
Merged-chr2-173812092-3	chr2	173811986	173812186	+	728.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74515.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	3.63084238031501	3.61211469045607	3.41879655339988	3.57205590500426	3.37120284119874	3.59045459793838	3.51531931615434	3.16360467917281	-0.489037918475055	0.344730640610243	0.653185919927502
Merged-chr7-29128982-4	chr7	29128859	29129059	+	843.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-3808.0	NM_009109	20190.0	Mm.439745	NM_009109	ENSMUSG00000030592	Ryr1	AI528790|RYR-1|Ryr|skrr	ryanodine receptor 1, skeletal muscle	protein-coding	4.28278437124788	3.81162929716705	4.15456217327188	4.12123981951305	3.98969079380997	4.02840022630828	4.22260529028507	4.28070048086924	0.0800612300564928	0.849951262989779	0.943355890616948
Merged-chr10-19669104-4	chr10	19668998	19669198	+	915.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43489.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	4.47685091444024	4.8628100346622	4.79299479223177	4.65654829725048	4.40027451499942	4.51547321776762	4.90105272768468	4.56106043697508	-0.219651028683668	0.549590616713567	0.798066561323089
Merged-chr7-98314160-3	chr7	98314062	98314262	+	789.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360615, intron 1 of 10)	intron (NM_001360615, intron 1 of 10)	-4620.0	NM_025408	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	4.22770951165936	4.18671055013713	4.22839553592989	4.68490727953918	3.4809141838754	3.58069005397195	3.88283512450207	3.89663247889453	-1.81555963551021	0.000188609553265037	0.00346371360005172
Merged-chr18-39763678-4	chr18	39763594	39763794	+	981.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9803.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	4.80422477374833	5.39944160958666	5.22814519814016	4.95757458491653	5.57075975104971	5.74464297764019	5.63937286601054	5.56798491171798	0.919292456773268	0.00205425469177567	0.0238570394364334
Merged-chr16-38812686-3	chr16	38812582	38812782	+	987.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029042, intron 3 of 3)	B3A|SINE|B2	-12479.0	NM_178924	22268.0	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	3.75559790949109	3.75894522996948	3.80969803985297	4.11887515834682	4.25873471948314	3.92939181330969	3.62881649920091	3.80756807801811	0.152554318811695	0.75366994955902	0.90280327392103
Merged-chr2-12745495-3	chr2	12745387	12745587	+	931.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-178554.0	NM_008961	19212.0	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	3.6611128063665	3.27995054639975	3.45498685934962	3.91667105563249	3.01510551357521	3.45253134498599	3.59744161225945	3.27352699900586	-0.877259957125289	0.135468819490053	0.409710435627045
Merged-chr11-3331937-1	chr11	3331837	3332037	+	904.0	f0_balb.idr	exon (NM_178149, exon 2 of 6)	exon (NM_178149, exon 2 of 6)	1206.0	NM_178149	216505.0	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	4.1793178025957	4.46453076337198	4.80344114478007	4.55956591808017	4.35462065065705	4.40474614715586	4.05920022440622	4.22668128315714	-0.592210745724416	0.142976657072659	0.421021656204484
Merged-chr17-34862676-4	chr17	34862573	34862773	+	948.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142706)	promoter-TSS (NM_001142706)	-159.0	NM_008198	14962.0	Mm.653	NM_008198	ENSMUSG00000090231	Cfb	AI195813|AI255840|B|Bf|C2|Fb|H2-Bf	complement factor B	protein-coding	4.51515539239765	5.50966039302985	4.65650677009729	3.82058049057295	5.24567712655947	5.72526090649595	5.14094076818226	4.65341298253656	0.846396660098674	0.253314845164493	0.564641510787067
Merged-chr3-98057141-4	chr3	98057029	98057229	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	43591.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	4.86461467652886	4.83578385407737	4.95901421481143	4.64285968675976	4.46455293476518	4.38286286102387	4.51297982251423	4.08520443114515	-0.989568289269918	0.00900282052393786	0.073185445645657
Merged-chr4-141642258-4	chr4	141642172	141642372	+	949.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 3 of 18)	intron (NM_001347237, intron 3 of 18)	-18438.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	5.31324900200068	4.88998578132597	4.6344315884236	4.67037998478129	5.58965085880757	5.51746251029476	5.42538675702655	5.68818361458541	1.22966678278314	0.000117217621194931	0.00231470519430306
Merged-chr11-100343831-4	chr11	100343752	100343952	+	989.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	9445.0	NM_010257	14459.0	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	4.84702301301605	4.7976484285975	4.99115302428095	4.72485796468642	5.07128873391842	5.3498203987498	5.00001770460661	4.80617456208818	0.465789795026528	0.154250231872228	0.439448040157191
Merged-chr15-83295096-4	chr15	83295009	83295209	+	936.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43335.0	NM_001004150	239559.0	Mm.323805	NM_001004150	ENSMUSG00000047878	A4galt	-	alpha 1,4-galactosyltransferase	protein-coding	4.68388041289328	4.82238685887324	4.90024212370065	4.83419392535739	4.56977865626246	4.34833587706203	4.58275518961514	4.99210486009573	-0.358221377706889	0.320500419433648	0.632352050768202
Merged-chr8-35136797-3	chr8	35136690	35136890	+	999.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-171100.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	3.87556224764447	3.72792874640836	3.58521866601158	3.56454256402186	5.16698736029236	4.77280344859653	5.23256433511926	5.28059384348876	3.40006578821662	8.86810951662509e-16	1.61026318184658e-13
Merged-chr9-40345321-3	chr9	40345215	40345415	+	710.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	930.0	NM_001357623	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	4.20725061184409	4.24836957783216	4.02099829248199	4.50692754728234	4.02451032444358	3.79816042824961	3.95371404524878	4.24793200980632	-0.657204524387822	0.133442619574596	0.406762546302092
Merged-chr2-6713723-4	chr2	6713641	6713841	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	7921.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	5.25806345624569	4.63001536582315	4.72299344357171	5.40780041450008	5.05124519633867	4.85918188671776	4.52520573935264	5.04827643507771	-0.330926943724462	0.393324934246688	0.692447094058087
Merged-chr8-126595644-4	chr8	126595504	126595704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2168.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.56191002015387	5.41052787882656	4.77309069605356	5.15957384882133	5.17555235994009	5.40294182740416	5.35139835220459	5.50897816340323	0.188040004809856	0.561100377190832	0.804849597634179
Merged-chr7-109987029-3	chr7	109986959	109987159	+	956.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153525)	promoter-TSS (NM_153525)	-829.0	NM_153525	233724.0	Mm.43212	NM_153525	ENSMUSG00000047554	Tmem41b	1500015G02Rik|1500031M19Rik|AU018901|D7Ertd70e|D7Ertd743e	transmembrane protein 41B	protein-coding	2.99925939643295	3.33700345200374	3.19932875188484	2.97026570644307	3.31637205686219	3.37416922396529	3.30453423896257	3.659978205223	1.06744195721296	0.0533438692478319	0.240989299217192
Merged-chr7-128738177-4	chr7	128738076	128738276	+	945.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145955, intron 1 of 15)	intron (NM_145955, intron 1 of 15)	2253.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	4.80600837227049	4.6638437287488	4.88074009057143	4.98623925191537	4.70440101766837	4.73572873982515	4.74573911322103	5.44469721846416	0.197634331119586	0.592853719423969	0.822423445862576
Merged-chr13-80881917-4	chr13	80881809	80882009	+	955.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1475.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	4.55874346712505	5.0504347687408	4.73643046505807	4.97022931511687	5.17792370632439	5.17042976947097	5.07038376589857	4.9603839939387	0.471501497390608	0.153431912473675	0.438089377751363
Merged-chr15-73423903-4	chr15	73423801	73424001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358045)	promoter-TSS (NM_001358045)	-710.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	6.23624763834266	6.46238760864257	6.31518108093472	6.40514996292427	6.34423584280898	6.77566849154491	6.35580530255482	6.46987457065972	0.187743691742865	0.406624582285114	0.703049240732416
Merged-chr16-81200654-6	chr16	81200484	81200684	+	941.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010954)	promoter-TSS (NM_010954)	-113.0	NM_001113208	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	4.43680698187457	4.17133681041364	4.64427881049151	4.52907420354367	4.6195307880223	4.73835280500634	4.83085917668644	4.64121576115297	0.541667310098132	0.13569163864732	0.410053288073261
Merged-chr12-111164650-4	chr12	111164541	111164741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130987, intron 2 of 3)	intron (NR_130987, intron 2 of 3)	-1729.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	6.83061025838115	6.89581155754143	5.79034630119192	6.35379832448609	6.7210558458698	6.98106434073365	6.83564017086572	6.46372945606775	0.322361506514257	0.267564100797124	0.579225825141073
Merged-chr11-117960192-4	chr11	117960085	117960285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9181.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	7.90937882967447	8.0789807176174	7.49371667365622	7.36500665875227	7.86593233729523	7.87654533440858	7.62822293571756	7.64345217824174	0.0270121393306869	0.900582738631156	0.963161804192488
Merged-chr15-100729471-4	chr15	100729345	100729545	+	972.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161767)	promoter-TSS (NM_001161767)	-69.0	NM_172451	207839.0	Mm.22969	NM_172451	ENSMUSG00000037280	Galnt6	4632410F13|AW047994|GalNAc-T6	polypeptide N-acetylgalactosaminyltransferase 6	protein-coding	4.70719697073431	4.56435190851086	4.33555190401311	4.4083953558688	4.76840893709081	4.60272344151021	4.53467798685055	4.55271862433547	0.267982894595571	0.456898647905165	0.740203679425567
Merged-chr5-31887728-4	chr5	31887625	31887825	+	993.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 6 of 11)	intron (NM_144541, intron 6 of 11)	189675.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	5.77333579756444	5.00919735948723	5.27989704465219	5.29530271099807	5.4767764746715	5.3581736075023	5.4577243613692	5.58535151756014	0.197255317040404	0.52091293075677	0.781067630728995
Merged-chr7-98360670-1	chr7	98360570	98360770	+	1000.0	f1_balb.idr	intron (NM_001168540, intron 1 of 2)	intron (NM_001168540, intron 1 of 2)	618.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	3.54092301484616	3.5528206146088	3.88105524227738	3.61450515711811	3.29462050822868	3.65818442112153	3.52760274949629	3.53947085453233	-0.480493796562241	0.33950795902283	0.648774648981312
Merged-chr11-69260933-4	chr11	69260816	69261016	+	882.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23894.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	3.87118629213453	3.77352386833308	3.97323637007559	4.11755531249735	4.03425337093664	3.88198628878566	3.74744352215123	4.41748084075331	0.259088643616478	0.576210937000863	0.813446739194192
Merged-chr14-47472546-4	chr14	47472435	47472635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030236)	promoter-TSS (NM_030236)	-26.0	NR_027414	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	7.73102127241201	7.62296786145839	7.54218694426122	7.71391950820751	8.02279161784878	7.65272865904111	7.75703696786087	7.84183580009948	0.229372818906747	0.188869845243167	0.487687851483034
Merged-chr7-126667701-3	chr7	126667598	126667798	+	768.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029339, intron 4 of 9)	L1MC4|LINE|L1	8720.0	NM_133670	20887.0	Mm.368982	NM_133670	ENSMUSG00000030711	Sult1a1	AI266890|PST|ST1A1|ST1A4|Stp|Stp1|mSTp1	sulfotransferase family 1A, phenol-preferring, member 1	protein-coding	4.03621628711678	4.45301523216407	3.8443936377826	3.35028934269044	4.05592336021946	3.73961780849922	3.60546535425229	3.78929599754536	-0.473652675519922	0.38881180768928	0.689124393912233
Merged-chr2-83729540-4	chr2	83729444	83729644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 1 of 29)	intron (NM_008402, intron 1 of 29)	5147.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	5.48393549527105	6.04619914584384	6.13471942377834	6.06015904118452	6.81044752291959	6.73929095825173	6.67259965041092	6.51300902278998	1.07901508038473	1.23447026869023e-05	0.000333466259032644
Merged-chr1-57639267-3	chr1	57639162	57639362	+	970.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135599.0	NM_144882	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	4.47285021193535	3.91843310055354	4.71015604819466	5.47459188423288	4.09892255774347	3.94902930709183	4.91463077069899	4.38129484121014	-0.774702295633974	0.348092130915599	0.655950834707556
Merged-chr5-76525936-3	chr5	76525851	76526051	+	950.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-3356.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	3.74858706175191	3.73443917711974	3.93725312744224	3.89929463861014	3.64442523488892	3.81558346175016	3.51595134882991	3.46543095171716	-0.671319328724973	0.158874308704014	0.446064231358103
Merged-chr17-87985040-4	chr17	87984940	87985140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010830, exon 4 of 10)	exon (NM_010830, exon 4 of 10)	9990.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	7.6244632333378	7.85500777907039	7.55510125695496	7.38694479899324	7.67643759610221	7.67682851762719	7.9175577118291	7.42591549113797	0.0991606809904449	0.614931334661518	0.834205058216801
Merged-chr8-125560992-4	chr8	125560894	125561094	+	995.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	8869.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	5.62088973908138	5.52106047612459	5.77719974435108	5.59123266276306	5.04840479685031	5.05205201456493	4.804012165333	5.09895267656286	-1.13030517011051	0.000135920567547159	0.00262756384504052
Merged-chr13-11904789-4	chr13	11904658	11904858	+	848.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023868, intron 3 of 104)	(TG)n|Simple_repeat|Simple_repeat	202187.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	3.46970508340589	3.19098888984555	3.36264762420441	3.05059914368161	3.38678424489193	3.47749783522244	3.2928845578041	3.41560686140136	0.465955223979695	0.383833326250029	0.685555904565125
Merged-chr2-155098885-2	chr2	155098767	155098967	+	634.0	f0_balb.idr|f1_balb.idr	non-coding (NR_040634, exon 3 of 3)	non-coding (NR_040634, exon 3 of 3)	1212.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	3.34557421901446	2.98280728002659	2.88010805919206	3.1641080335441	2.50251621437074	2.71008112030332	2.6704907216365	2.60248367215288	-2.59747856727291	0.000573624236148328	0.00861756004744657
Merged-chr10-62261312-4	chr10	62261211	62261411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009314, exon 3 of 5)	exon (NM_009314, exon 3 of 5)	8873.0	NM_009314	21337.0	Mm.8054	NM_009314	ENSMUSG00000020081	Tacr2	Nk2r|Skr|Tac2r	tachykinin receptor 2	protein-coding	5.87163669665679	6.40139824442784	5.80068559862023	5.71837043990062	5.8630445062746	5.7648030159668	5.97464216333812	5.82099826984081	-0.181712275283161	0.514190009514877	0.776911645062715
Merged-chr5-95898162-4	chr5	95898043	95898243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58796.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	7.37352693082924	7.67768085710546	7.49868358029572	6.76672211958905	6.68681832068755	7.14993582456563	6.6021065803007	6.15043730274044	-0.928883004965424	0.00117204819122977	0.0152849428734965
Merged-chr8-80032746-2	chr8	80032646	80032846	+	757.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_020259, intron 4 of 12)	intron (NM_020259, intron 4 of 12)	25262.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	3.34102922841974	3.06465730439384	3.16202390739477	3.23394974533638	3.33830364544879	3.56432137183918	3.43411935632218	3.28263363884691	0.721543332316896	0.172652611033709	0.466172528668856
Merged-chr2-112265623-4	chr2	112265526	112265726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133649)	promoter-TSS (NM_133649)	-688.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	8.3375276459426	8.33809855750531	8.42895892705352	8.63473890510078	8.2785915904395	8.34605237628999	8.56554410490904	8.23040934236227	-0.109757429612873	0.512738093675737	0.776017039843318
Merged-chr14-40932440-3	chr14	40932329	40932529	+	904.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	15780.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	3.2547439860143	3.13661315590787	3.46304570502271	3.82548925408248	2.87506034163539	2.81265330792811	3.12586708928697	3.00616312669389	-2.04924930324555	0.00197982220294259	0.0232199315510382
Merged-chr11-97555468-4	chr11	97555361	97555561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 1 of 19)	intron (NM_018873, intron 1 of 19)	19665.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	5.27608722914996	5.03286924125887	5.0259610028968	4.70772141065294	5.41320495878902	5.09382056282236	4.96675976903029	5.15414664778532	0.323263736933923	0.331047696671044	0.642253645543575
Merged-chr5-118615645-3	chr5	118615560	118615760	+	666.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	54941.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	3.20113864454682	3.47672815025845	3.31264512023418	3.51813241850499	3.00193362169591	2.82290973669946	3.06982248170498	3.14063585152184	-1.51688535001174	0.0121706539945528	0.090825642763501
Merged-chr15-75873824-4	chr15	75873727	75873927	+	918.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	11488.0	NM_026960	69146.0	Mm.27385	NM_026960	ENSMUSG00000022575	Gsdmd	1810036L03Rik|AW558049|DF5L|Dfna5l|Gsdmdc1|M2-4	gasdermin D	protein-coding	4.32221994277288	4.52072670289354	4.14291556656987	3.38516126123507	4.45949451973781	4.65088259418931	3.91831810815902	3.93218462894613	0.274421399944639	0.609068207365218	0.83089280248568
Merged-chr10-44630517-6	chr10	44630390	44630590	+	839.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-171742.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	3.72374760307772	3.44552734836328	3.8129335418512	3.78175763442729	3.38428737911786	3.39457118125605	3.27466762774131	3.57415516750983	-0.986552816109277	0.0560298598384886	0.247757308408013
Merged-chr1-105169880-4	chr1	105169782	105169982	+	955.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186125.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	4.28548758635571	4.81458220615111	4.76060869899915	4.42999899791924	4.83319434925629	4.85895335084704	4.93565918331535	4.28360031383682	0.357044313552297	0.360119034288394	0.665667917361943
Merged-chr3-65397397-4	chr3	65397292	65397492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4839.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	6.26952861515574	5.74130362994087	5.77668333724465	6.3679136569411	5.80836113304545	5.95320554423084	5.79646140533533	5.52326451942778	-0.485413392884544	0.0898099488001026	0.327270892624917
Merged-chr1-171378116-1	chr1	171378016	171378216	+	626.0	f0_balb.idr	intron (NM_001122680, intron 1 of 7)	L2c|LINE|L2	7943.0	NM_001122680	71740.0	Mm.263414	NM_027893	ENSMUSG00000006411	Nectin4	1200017F15Rik|Prr4|Pvrl4	nectin cell adhesion molecule 4	protein-coding	3.61647448689279	4.07530179561262	3.85305979400679	3.46309131152895	3.492224077264	3.30672944096223	3.25136601811138	3.19112044030239	-1.50448517197464	0.00822140105781586	0.0684113988653583
Merged-chr19-43511271-3	chr19	43511157	43511357	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 2 of 8)	intron (NM_010324, intron 2 of 8)	13348.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	3.8207618088691	3.47979303815484	4.13560269374188	4.04224866186671	3.61918967777266	3.7774312735241	3.85480424829174	3.86897574678634	-0.339191672271462	0.485990101062499	0.759731583591333
Merged-chr12-34751714-1	chr12	34751614	34751814	+	584.333313	f0_balb.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	165381.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	3.14532757096927	2.87845894912877	2.8712706629651	3.17578444717908	2.59274364817268	2.70434080772311	2.73421694575296	2.67217279380474	-1.77734682869027	0.00901155179423063	0.0732062594340952
Merged-chr10-50690486-4	chr10	50690403	50690603	+	992.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 14 of 41)	MTC|LTR|ERVL-MaLR	97834.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	5.07169385294094	5.12836557282211	5.0725422274129	5.10242634901674	5.36818299841306	5.14145194942202	5.57238227561788	4.96116413897068	0.355701676877999	0.251287061278573	0.562694237730757
Merged-chr11-3180811-2	chr11	3180712	3180912	+	954.25	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 4 of 32)	PB1D10|SINE|Alu	12651.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	4.1540884757977	3.4740339453839	4.29323842057499	4.12560006562451	3.12769319103858	3.19578823905762	3.14725496965923	3.30175065136395	-3.12551235087306	1.22372740901467e-06	4.21231818906155e-05
Merged-chr19-11081151-3	chr19	11081034	11081234	+	845.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022430)	promoter-TSS (NM_022430)	-31.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	3.41856298439075	3.24559794759675	3.30860454084903	3.34773510566714	3.63599412996338	3.36112398608023	3.23822932299899	3.12171875873292	0.117399261322337	0.82985216546711	0.934660310209363
Merged-chr7-110772724-4	chr7	110772634	110772834	+	982.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009667, exon 1 of 15)	5' UTR (NM_009667, exon 1 of 15)	130.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	5.69944624625403	6.45619882040055	5.70046215260664	4.66434066379344	5.77617799133869	6.08419830953792	5.61993042260905	5.24901218076688	-0.126667107122375	0.835882183946715	0.937525731479361
Merged-chr6-72599343-4	chr6	72599242	72599442	+	863.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144917)	promoter-TSS (NM_144917)	714.0	NM_026159	67442.0	Mm.305108	NM_026159	ENSMUSG00000056666	Retsat	0610039N19Rik|C80029|MMT-7|Ppsig	retinol saturase (all trans retinol 13,14 reductase)	protein-coding	4.08068969557971	3.96543128715882	4.30223857670975	4.17925831213986	4.05959680749346	4.15532019782872	4.321815631349	4.07887689376702	0.0412181096474731	0.919620122766655	0.970343257381288
Merged-chr5-137076297-4	chr5	137076207	137076407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4035.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	7.4103294028887	7.27480844745277	7.29123551587954	7.40343239688726	6.9780933221051	7.46816081066505	7.43981572008705	7.14126926252216	-0.113879575416942	0.566276782813306	0.807835530970224
Merged-chr7-24884051-4	chr7	24884015	24884215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360119)	promoter-TSS (NM_001360119)	-477.0	NM_001360128	20085.0	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	6.94952781580542	7.10955264234943	7.06367902022848	6.67551672337213	7.16895029050018	7.04668785000924	7.21635696487842	7.15114696636432	0.279149415458954	0.166217527479811	0.457368075942688
Merged-chr15-59486301-4	chr15	59486202	59486402	+	885.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	112104.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	4.13723047002777	4.379128650952	4.2396783335502	3.95906699270244	4.40878878946018	4.89332774647895	4.70133980584188	4.50211087167643	1.06355839411716	0.00671383272563796	0.0590344533141673
Merged-chr6-29164746-4	chr6	29164654	29164854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133925)	promoter-TSS (NM_133925)	-30.0	NM_133925	68272.0	Mm.40802	NM_026650	ENSMUSG00000029701	Rbm28	2810480G15Rik|AI503051	RNA binding motif protein 28	protein-coding	6.48353768168101	6.76379042328406	6.21042946109051	6.38229979045706	6.02424030803009	6.48510877646533	6.38432441317315	6.48004475371938	-0.19169547472684	0.437536282326166	0.725737614792881
Merged-chr15-100747162-3	chr15	100747060	100747260	+	952.666626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-14423.0	NR_045782	619313.0	Mm.123436	NR_045781	ENSMUSG00000116504	I730030J21Rik	-	RIKEN cDNA I730030J21 gene	ncRNA	4.16037053584941	4.31355365947502	4.65298472709134	4.65727002051727	3.490177131849	3.9745189435089	3.64967462615245	4.06265084619298	-1.79289681005941	0.00019889371805215	0.00362258340768526
Merged-chr1-54888696-4	chr1	54888558	54888758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	MLT1J|LTR|ERVL-MaLR	37729.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	6.12662314972862	5.95578581736706	6.652637236504	6.25483953982699	5.4790232474605	5.39958558086623	5.6680093585826	5.69295359697803	-1.13564635467033	4.50632708103361e-05	0.00103336293589205
Merged-chr3-79253295-3	chr3	79253218	79253418	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 2 of 2)	intron (NR_045502, intron 2 of 2)	40399.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	5.03112380190472	4.35989083768146	4.55194990478125	4.57264117043043	5.83763231346689	5.28383512856314	5.94466181423494	5.82388632803358	2.02766390911368	1.71239312594371e-09	1.05255984724998e-07
Merged-chr4-118437925-2	chr4	118437827	118438027	+	684.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023223)	promoter-TSS (NM_023223)	-584.0	NM_023223	107995.0	Mm.261764	NM_023223	ENSMUSG00000006398	Cdc20	2310042N09Rik|C87100|p55CDC	cell division cycle 20	protein-coding	3.05338455464833	3.13658790597503	3.11150977248521	2.73642424868843	3.03301696260272	2.74844790687809	2.92020833988994	3.2684031309434	-0.0245965046472161	0.969086493298108	0.988869722693227
Merged-chr10-115328781-4	chr10	115328691	115328891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER70B|LTR|ERVL	-13200.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	6.00215194387876	5.75997995224517	5.95920160742766	6.05067141750096	6.14259151126587	5.94333133848207	6.17095205171131	6.02035322419189	0.193093407108647	0.421513659781824	0.714001052191097
Merged-chr9-44460788-4	chr9	44460703	44460903	+	939.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6036.0	NM_009476	22269.0	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	4.37456309753059	4.9991360527148	4.00041775233514	4.37240315355695	4.64340993160002	4.55245911904741	4.71640284397638	4.73619695001685	0.377173129560006	0.369450655400968	0.673692529630015
Merged-chr10-108163002-5	chr10	108162847	108163047	+	970.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027892, intron 1 of 25)	intron (NM_027892, intron 1 of 25)	547.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	4.2519886602925	4.25404018461649	4.6802591060679	4.31307791383827	4.42010599409105	4.57273943954581	4.46331929638147	5.1035436573203	0.633444935165837	0.115067602796981	0.375410067073572
Merged-chr8-70152646-2	chr8	70152561	70152761	+	773.5	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_001045484)	promoter-TSS (NM_001045484)	-100.0	NM_001045484	17259.0	Mm.432505	NM_008578	ENSMUSG00000079033	Mef2b	AI451606	myocyte enhancer factor 2B	protein-coding	4.29765292592706	3.82431467386787	4.02525667981764	4.1500554048169	4.10264292489073	3.92712634793979	4.53372727973109	4.21098261829058	0.31711086550456	0.468257814424382	0.747580364545871
Merged-chr7-24462996-4	chr7	24462894	24463094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011113, intron 1 of 6)	intron (NM_011113, intron 1 of 6)	511.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	5.77007919622065	5.79328575195827	6.04205790126537	5.89999273033357	5.95265160513136	6.29393552978335	5.55349182379121	5.8163483590027	0.0780571994385402	0.774043471556639	0.911716359199097
Merged-chr11-55033416-4	chr11	55033285	55033485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110211)	promoter-TSS (NM_001110211)	86.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	6.5394025990965	6.73167426766215	6.12287997529376	6.11337077057019	6.55863073751227	6.46060419242391	6.19426723174387	5.93375129033598	-0.124214011818214	0.650583768724772	0.853334477197202
Merged-chr2-92024546-4	chr2	92024459	92024659	+	948.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011957)	promoter-TSS (NM_011957)	-389.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	4.98967425771991	5.21500844901348	4.84403313017546	5.3464350791747	5.02283532016885	4.67385224092901	5.06535491717752	4.95211260657851	-0.364783669110812	0.276794892619516	0.58879965876495
Merged-chr2-150749575-1	chr2	150749475	150749675	+	1000.0	f0_balb.idr	intron (NM_001355068, intron 1 of 13)	intron (NM_001355068, intron 1 of 13)	494.0	NM_172117	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	5.57134385568624	5.55752942961598	5.43266186040951	5.22799218319966	5.42294523500103	5.79761475618241	5.76066148595471	5.54168330668289	0.329363868171315	0.24448857866083	0.555708779858777
Merged-chr3-9598211-4	chr3	9598108	9598308	+	893.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 1 of 8)	intron (NM_133218, intron 1 of 8)	11877.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	4.44578641771262	4.44313394193752	4.04088436584273	4.47102010189362	4.60793101965	4.48656585491287	5.10938738490443	4.52806970172506	0.745486761002056	0.0616721088089452	0.262733961749576
Merged-chr3-28236874-4	chr3	28236793	28236993	+	718.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26321.0	NM_001163007	665113.0	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	3.67615477322971	3.7023333782436	3.73609306159778	3.76838403341089	4.32147785478012	3.79752441455962	4.07242081622765	4.46743205186069	1.26324077620905	0.00520462425278617	0.0489508390181113
Merged-chr10-17721172-4	chr10	17721122	17721322	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2006.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	4.84038230326225	4.48678661977898	4.94687687034683	4.95196198883017	5.06075307747521	4.73313276083354	4.88896055310758	5.00929159713891	0.21966740456757	0.520308173538908	0.780730751415725
Merged-chr6-57812579-4	chr6	57812493	57812693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	L2a|LINE|L2	12532.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	6.90474193990468	6.60670006925771	6.71989685402032	6.95679053370687	7.1209784088903	7.20858366919061	7.0206154818018	6.97839549863389	0.377312845483844	0.0605658440096819	0.260052547978977
Merged-chr2-5793985-4	chr2	5793876	5794076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356501)	TTS (NM_001356501)	-51058.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	7.68096727123338	7.62322195298443	7.75072789380593	7.25732280612891	7.22626063386303	7.15431721603431	7.17706159698157	7.14992609451643	-0.537750908454377	0.00629616765815016	0.0561949740112188
Merged-chr12-32964004-1	chr12	32963904	32964104	+	641.0	f0_balb.idr	intron (NM_198710, intron 1 of 4)	intron (NM_198710, intron 1 of 4)	9818.0	NM_198710	19027.0	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding	2.68389734358583	2.8970221755734	2.68426290699339	2.731539426711	2.44224439317986	2.29146446255778	2.34623668467564	2.27328500344813	-2.53650897978474	0.00274444760208964	0.0297830516647565
Merged-chr6-140766544-4	chr6	140766429	140766629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	139644.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	5.71485241915166	5.77081654867539	5.63485901697945	5.92318248719782	6.07190691377383	5.96757148796208	5.90165226356437	6.05342968010103	0.355514522466838	0.151214451646677	0.434599590315708
Merged-chr15-78369118-4	chr15	78369030	78369230	+	868.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19639.0	NM_001163613	73376.0	Mm.73222	NM_028522	ENSMUSG00000062154	Tex33	1700061J05Rik|Ean57	testis expressed 33	protein-coding	4.81585631155177	4.41399752925696	4.33668683488388	4.46926218294727	4.3228187826033	4.32137989057049	4.31749776461798	4.24103333469403	-0.506228264546271	0.188921371794782	0.48774879662607
Merged-chr6-89580042-3	chr6	89579939	89580139	+	885.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 1 of 6)	intron (NM_001167736, intron 1 of 6)	15613.0	NM_025351	66098.0	Mm.20313	NM_025351	ENSMUSG00000030086	Chchd6	0710001P09Rik|1700021B03Rik	coiled-coil-helix-coiled-coil-helix domain containing 6	protein-coding	3.46780194786065	3.7867266237161	3.62505487969046	3.54682408521383	3.19232629681271	3.26793627858149	3.56000200458861	3.35039823457468	-0.916307345634737	0.0827694162253839	0.312543462997698
Merged-chr3-21959095-4	chr3	21958998	21959198	+	738.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117554.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.99174160142567	4.14095498344854	3.89120088127302	3.78926413343366	4.118974668338	4.01275159982278	3.97541761902408	4.12788506330065	0.304291285388183	0.473204068955794	0.751076459932416
Merged-chr9-99390675-3	chr9	99390512	99390712	+	653.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008624, intron 4 of 5)	intron (NM_008624, intron 4 of 5)	-32082.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	3.17773222249054	3.13441465035877	3.46548359994408	3.31326276435476	3.12668487380931	3.4727010998328	3.34485581627418	3.56231433754508	0.360352366427901	0.508501793151557	0.773535236506654
Merged-chr3-105705324-1	chr3	105705224	105705424	+	850.5	f0_balb.idr	promoter-TSS (NM_001163356)	promoter-TSS (NM_001163356)	-134.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	3.60101423557173	3.37107073305565	3.28360126786808	3.56893296873807	3.36220429128206	3.1266679634668	3.38556046810042	3.34068534252057	-0.55400068402131	0.300404754057039	0.612422387893833
Merged-chr7-142394439-4	chr7	142394312	142394512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6542.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	5.237649952314	5.43585314511029	5.43333420421278	5.74374226106098	5.58184370414324	5.85296019743015	5.83365397944142	5.74754623366645	0.42484705084884	0.135370689540981	0.409617955029463
Merged-chr18-36345477-3	chr18	36345346	36345546	+	902.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-3178.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	3.13964115682452	3.51704218779419	3.51320165767208	3.15558009488961	2.87754494850331	3.18838384037522	3.00088971312751	3.13845478384211	-1.14823085153366	0.0555709903304535	0.246756147489906
Merged-chr11-119711003-4	chr11	119710910	119711110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 3 of 33)	intron (NM_028898, intron 3 of 33)	108105.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	5.50458054155588	5.41063270349589	5.53176462035799	5.47248023886898	5.29226938472107	4.86774512871213	5.367871084355	5.67444722243327	-0.256550655751422	0.403324613187397	0.700700507615324
Merged-chr8-91082153-4	chr8	91082088	91082288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282000, intron 4 of 20)	intron (NM_001282000, intron 4 of 20)	12131.0	NM_001282000	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	7.21247436744507	7.54646664617677	7.08158781054093	6.52419479576895	6.83185436258975	7.14941797595434	6.83178103819918	6.38198001737226	-0.430939467028696	0.121143368659492	0.385390724845415
Merged-chr2-160210725-4	chr2	160210636	160210836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116758.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	6.71326984167093	6.80744330427673	6.74391714322665	6.94412962536659	6.79183711141956	6.60965579982619	6.88516646381004	6.67954801152326	-0.0947145314832218	0.640559635178713	0.848234068144109
Merged-chr2-50705127-1	chr2	50705027	50705227	+	761.0	f0_balb.idr	Intergenic	Intergenic	-204557.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	3.36801570980812	3.36027394354362	3.63812380277849	3.54878434288349	3.49772399178969	3.65213181069738	3.46977680402881	3.42522915622828	0.0829357821439181	0.868035166588506	0.950566549063882
Merged-chr1-138124216-3	chr1	138124110	138124310	+	916.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111316, intron 2 of 31)	intron (NM_001111316, intron 2 of 31)	50916.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	3.96669855782271	3.31491451445987	3.30057209458956	3.64227580211009	3.58245888309684	3.71699774801732	3.63628452783498	3.48582180774473	0.0663577559823577	0.900177234847797	0.963037675111283
Merged-chr8-109694079-4	chr8	109693993	109694193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028018)	promoter-TSS (NM_028018)	-799.0	NM_001361562	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	6.32504894910576	6.43136698201961	6.63422065174722	6.41558377444347	6.64260207370827	6.64900161931251	6.52243049376813	6.91318660920886	0.341497069189839	0.113868646741767	0.373212525046379
Merged-chr13-24806283-3	chr13	24806181	24806381	+	887.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024473, intron 3 of 4)	intron (NM_024473, intron 3 of 4)	4624.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	3.62460146329455	3.34238446968614	3.77492978326271	3.58780539413161	3.78437114244032	3.50815914155169	3.80413951165012	3.51269759405121	0.240460369661134	0.627092236852632	0.841002239063709
Merged-chr1-162388727-4	chr1	162388628	162388828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038619, intron 2 of 20)	intron (NM_001038619, intron 2 of 20)	89306.0	NM_172646	103967.0	Mm.441620	NM_172646	ENSMUSG00000040265	Dnm3	9630020E24Rik|AW061159|B230343F03Rik|C530045C17|Dyna III|mKIAA0820	dynamin 3	protein-coding	5.92522197824703	6.69505879039835	6.1055927009564	6.12448535695588	6.42093875267753	6.15089561039373	6.13517712493291	5.76900208484862	-0.153421182241823	0.591675322062202	0.821737288034682
Merged-chr7-35735455-3	chr7	35735352	35735552	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	19002.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	7.44763005991801	6.7386699850639	7.72223446846958	7.839371016631	3.77225875896338	4.46071340653938	4.34905485215555	4.29805195548833	-8.70215573993619	1.59631819190601e-19	5.02762533547248e-17
Merged-chr14-64186018-4	chr14	64185931	64186131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 4 of 4)	AmnSINE1|SINE|Deu	81708.0	NM_028525	73382.0	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	7.10632686803683	7.35885411240128	7.38737897934618	7.44935818120209	7.31304995592691	7.24816132156715	7.10738008332996	7.00227394223955	-0.218121171681892	0.256249577960615	0.567812876264657
Merged-chr19-44297638-2	chr19	44297538	44297738	+	564.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_009128, intron 2 of 5)	intron (NM_009128, intron 2 of 5)	3962.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	3.40106232727425	3.2757065095391	3.29084704951901	3.21592215257735	3.28462542700909	3.34323608715485	3.38784219398753	3.28914219546092	0.12532438134658	0.808650793374609	0.926138274128125
Merged-chr5-72291681-3	chr5	72291588	72291788	+	899.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 21 of 22)	intron (NR_003966, intron 21 of 22)	88345.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	3.46796834192153	3.6429714845169	3.46843075586817	3.80696309046856	3.30070242344165	3.19765335785208	3.34147570629824	3.57206804716174	-0.875606157561027	0.100275906863168	0.347539985336991
Merged-chr11-114866370-2	chr11	114866270	114866470	+	913.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110338, intron 2 of 3)	(TG)n|Simple_repeat|Simple_repeat	14340.0	NM_147217	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	4.36045423454645	3.44060222488508	3.62185519455391	3.60184665261348	4.00314222519658	3.80019141226356	3.48668695550092	3.8847432749002	0.0146555994822453	0.978590616906333	0.992449975361913
Merged-chr11-61794969-4	chr11	61794873	61795073	+	994.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013881, intron 20 of 26)	intron (NM_013881, intron 20 of 26)	-32885.0	NM_001164243	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	5.19904773178186	4.87265900471825	5.47896499078949	5.58742329357425	4.93464069868551	5.02149522071402	4.9732325009474	5.28666103932265	-0.499716911034793	0.138426276174952	0.413889099884774
Merged-chr19-11559811-4	chr19	11559684	11559884	+	971.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22935.0	NM_025658	66607.0	Mm.441056	NM_025658	ENSMUSG00000024678	Ms4a4d	2210417J23Rik	membrane-spanning 4-domains, subfamily A, member 4D	protein-coding	5.31217417782246	4.9837855210051	4.88178975523403	3.72069496084621	5.08500307548371	5.22721365182914	4.92849023005994	4.8413009010964	0.337104196784972	0.472455086636494	0.750627901424053
Merged-chr13-67553074-4	chr13	67552930	67553130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131100)	promoter-TSS (NR_131100)	122.0	NM_001035231	212276.0	Mm.422831	NM_183145	ENSMUSG00000095432	Zfp748	KRAB-O|Rslcan20/21|Zfp208|mszf54	zinc finger protein 748	protein-coding	6.88620493343556	6.76034311869362	7.22825246934367	6.87779448319862	6.5844987146986	6.55795643202615	6.78563848149071	6.6381612619004	-0.426210950912909	0.0448972651032392	0.216528384903006
Merged-chr6-124202352-4	chr6	124202267	124202467	+	982.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001104642, intron 3 of 5)	intron (NM_001104642, intron 3 of 5)	29417.0	NM_001104642	232367.0	Mm.469872	NM_001104642	ENSMUSG00000072778	Vmn2r27	EG232367	vomeronasal 2, receptor27	protein-coding	5.14718810244828	4.82690667014284	4.64282301918404	5.27027862331822	4.81798402609515	4.94501923644194	4.96548392495017	4.95211181523056	-0.189482117688129	0.582887618505224	0.816813129774452
Merged-chr4-9110538-4	chr4	9110424	9110624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-158769.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	6.93826493387815	6.67198258494782	6.58268817752093	6.91715291648789	7.00892669355543	6.42389373626216	6.80124986477878	6.67326384471942	-0.0517188726814284	0.820355159949385	0.931216561407907
Merged-chr17-86063698-4	chr17	86063586	86063786	+	874.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030133, intron 14 of 20)	intron (NM_030133, intron 14 of 20)	81489.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	3.72309309537451	4.24284417806651	3.83901514289046	3.66114462126364	4.26765521289926	4.11933742192409	4.24032884641143	3.9929206972901	0.749061429305147	0.095422247796227	0.338064813891177
Merged-chr2-74825889-4	chr2	74825811	74826011	+	986.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016804)	promoter-TSS (NM_016804)	99.0	NM_016804	53375.0	Mm.292613	NM_016804	ENSMUSG00000027099	Mtx2	1500012G02Rik	metaxin 2	protein-coding	5.05705145808939	4.66471147885835	5.35701163606585	5.34787255773335	5.00249279929817	4.93428779983528	4.99938985648306	5.27083927012906	-0.166318810464171	0.628215939547901	0.841427212108636
Merged-chr5-99411082-2	chr5	99410982	99411182	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	L1_Mur3|LINE|L1	-158155.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.13990544723385	3.0466054910826	3.37130885832517	3.15922628327766	3.52064252149774	3.37249125526433	3.35774666770454	3.20027971920496	0.709774545449942	0.187662600716333	0.48610501726011
Merged-chr14-73473797-4	chr14	73473685	73473885	+	881.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-36264.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	3.27659761668909	3.39382638284595	3.40359699179388	3.65754386733046	3.8041470392962	3.57774968287479	3.39154136384146	3.85459639615122	0.69275114629703	0.188994110319319	0.48779670955222
Merged-chr17-46893257-4	chr17	46893153	46893353	+	879.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178385)	TTS (NM_178385)	2632.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	4.33067300817097	4.64959597747798	4.00774762151627	4.34021124821469	4.15664292809613	3.769508726901	4.18392937147028	4.05687105310823	-0.748622099514277	0.0895792020368523	0.326714389310366
Merged-chr18-32369985-4	chr18	32369902	32370102	+	861.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045403, intron 2 of 2)	Lx9|LINE|L1	-7215.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	4.44670924119708	4.50063475857543	4.31470501572761	4.31721931320159	4.55057760341312	4.24043411845591	4.87626448682817	4.31207116326349	0.297006795698937	0.446365231055845	0.73208670202825
Merged-chr5-90689946-4	chr5	90689849	90690049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49422.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	8.22414384185656	8.1589268078705	8.69885246907629	7.97685392543855	7.81847378982021	7.85584934001354	7.98774622935496	8.15507499991765	-0.420445679160939	0.0406069574795826	0.203647053226182
Merged-chr17-57249442-4	chr17	57249327	57249527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134125)	promoter-TSS (NM_134125)	-24.0	NM_001242391	106628.0	Mm.37368	NM_134125	ENSMUSG00000019487	Trip10	AI646975|Cip4	thyroid hormone receptor interactor 10	protein-coding	7.11415524589607	7.33544448895608	6.28120441161836	6.86104776225463	7.02946837340046	7.31425603671215	7.20775615632319	6.40125440672842	0.106393552352727	0.714771793745671	0.886003030420421
Merged-chr6-121130238-4	chr6	121130134	121130334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270475, intron 1 of 31)	intron (NM_001270475, intron 1 of 31)	788.0	NM_001270475	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	5.33459260868377	5.75055641270861	5.42899318011148	5.58342063618264	5.71862001252926	5.57513529913303	5.64568580273822	5.74256555425117	0.222961302000631	0.407920889798484	0.704075086986739
Merged-chr2-178414477-4	chr2	178414464	178414664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085501)	promoter-TSS (NM_001085501)	30.0	NM_001081289	71532.0	Mm.40216	NM_001081289	ENSMUSG00000070476	Fam217b	9030418K01Rik|AI851938	family with sequence similarity 217, member B	protein-coding	6.18787081381967	6.47322675831232	6.67491347452215	6.66803471890031	6.00560157052063	6.2379590181632	6.31035729994895	6.16393279046671	-0.520997655099408	0.028320100566303	0.161276617186085
Merged-chr2-164917052-4	chr2	164916948	164917148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-5298.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	6.29825891781167	6.14662250804175	6.22466511277145	5.94178276238104	6.27276624229131	6.12369584565649	6.26710839160757	6.46405329337524	0.221226881401129	0.347039947986718	0.655120046086739
Merged-chr16-90285359-4	chr16	90285239	90285439	+	905.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178923)	promoter-TSS (NM_178923)	-836.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	4.02388187748926	3.91026559737965	4.07205606140386	4.27082507580819	3.95759714472914	3.8761897431928	4.00745888024972	4.32227072632984	-0.0985969848903343	0.821129383213901	0.93149474715163
Merged-chr6-108611871-4	chr6	108611765	108611965	+	890.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040757, intron 4 of 4)	ORR1E|LTR|ERVL-MaLR	11302.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	4.29702187132336	4.444221103017	4.6075134043765	4.81389329818381	4.52225458533212	4.20884113315121	4.92515622271718	4.82069329082446	0.171434308570572	0.671843622757716	0.86496205661858
Merged-chr2-91136730-3	chr2	91136633	91136833	+	800.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177720)	TTS (NM_001177720)	18589.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	3.3474538117605	3.17056080267367	3.05923597439884	2.87734670253232	3.18417671554568	3.295138646507	3.17050391416411	3.23827117873514	0.419545684189621	0.459982698258087	0.742300655594817
Merged-chr5-77140311-3	chr5	77140206	77140406	+	712.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25183.0	NM_175606	74318.0	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding	2.7920628112764	3.06653713620194	3.23764004810722	2.85419344513583	3.27405453312589	3.17576780447524	3.05376812296839	3.28847324872742	0.838587011878364	0.153046861287471	0.437555330104179
Merged-chr7-19272921-3	chr7	19272808	19273008	+	912.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1054.0	NM_001282022	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	3.37103624730688	3.30372757026089	3.24687679330735	2.98419796473161	3.68379035529582	3.70987275556205	3.29855085514915	3.77448508678467	1.40829133729207	0.00830166358454218	0.068897506250439
Merged-chr19-11329648-4	chr19	11329566	11329766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027836, intron 2 of 6)	L1MA4|LINE|L1	5029.0	NM_001276398	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	7.2371812354651	7.08449964030562	6.89217577727333	6.25261885879387	6.65116964436995	7.01616273422672	6.6781845758088	5.93585568021957	-0.404604092801839	0.18928328918041	0.48816968877758
Merged-chr18-68031076-3	chr18	68030983	68031183	+	832.716675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	MTD|LTR|ERVL-MaLR	97910.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	4.17738454367951	4.0388466935233	4.26052197259915	4.1685788955875	3.55669020688556	4.01574537202913	3.64826402069537	4.21720934847602	-0.769908882318963	0.101792723420317	0.350149062993244
Merged-chr9-50532153-4	chr9	50532047	50532247	+	794.012512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133217)	TTS (NM_133217)	-3506.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	4.29268025187619	4.11022125721763	3.6748729844083	3.91446459874449	4.39144918981988	4.14445604045181	4.18965931067535	4.29058549553235	0.637106481756874	0.137335539310562	0.412168754588966
Merged-chr10-17178073-2	chr10	17177961	17178161	+	831.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-82279.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	3.86115201915056	3.86855414924972	4.16535043559345	4.38981461094548	4.33490898181818	4.19599794565706	4.35223962141791	3.85960674485852	0.24447334590795	0.59204111312169	0.821919268747471
Merged-chr5-105730733-3	chr5	105730617	105730817	+	852.322205	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	MIRb|SINE|MIR	29907.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	4.10260239747516	4.11483297257058	4.10324169047268	4.1296495128297	3.56968840868327	3.68665148513098	3.9476015039541	4.05612842139897	-0.814332132730706	0.0718371675620459	0.287919452641609
Merged-chr11-58282726-4	chr11	58282627	58282827	+	770.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24342.0	NM_182996	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	4.41194226357056	4.58336308118221	4.54263162310301	3.77575307483166	4.91642865610763	4.67637901201843	4.52133017627559	4.86496870114707	0.89334525930442	0.0338982586669466	0.181676391360183
Merged-chr2-155787111-3	chr2	155787032	155787232	+	561.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010808, intron 1 of 8)	MTD|LTR|ERVL-MaLR	11790.0	NM_010808	17391.0	Mm.389325	NM_010808	ENSMUSG00000027612	Mmp24	AU040325|MMP-21|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding	3.36061898739179	3.65250717585377	3.68156743389692	3.29750920348227	3.67393277534053	3.4121179359802	3.5170656040396	3.29745361467704	-0.0397994902740608	0.939847324008077	0.978335278456146
Merged-chr13-13538774-4	chr13	13538702	13538902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51607.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	5.38550417087074	5.0824464012582	5.23261074760527	5.6721063525522	5.28479683307533	5.47163298178978	5.07023203143812	5.77676198016069	0.0798615239326344	0.808834740146065	0.92615112212231
Merged-chr7-132304649-3	chr7	132304603	132304803	+	861.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 1 of 7)	intron (NM_029935, intron 1 of 7)	-10961.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	2.76304123102352	3.2329168896106	3.22074957859628	2.62054678776791	2.97772899441363	3.09123639613785	3.15133185290813	3.46879299988214	0.772791126966452	0.24150869467215	0.552034276752374
Merged-chr16-57545954-4	chr16	57545784	57545984	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-3358.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	3.04950851424775	2.9008737576422	3.33463493580935	3.28121522522048	3.11138050700092	3.22223098000457	3.15963184788239	3.1697947860841	0.0213682533690447	0.970302865268096	0.989345036412465
Merged-chr10-120876421-4	chr10	120876328	120876528	+	925.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 1 of 6)	MLT1I|LTR|ERVL-MaLR	18799.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	4.81852255741267	4.74574100505924	4.99760729555284	4.70764942694955	4.34399055925433	4.2688016519749	4.32860559769633	4.39053655766872	-1.09966313047942	0.00277802030452211	0.0300831746927703
Merged-chr18-9810363-1	chr18	9810263	9810463	+	923.0	f0_balb.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	102715.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	3.69705927300463	3.13862392591293	3.51881281984184	3.58038476100958	3.0044444458114	3.24103730969156	2.98307130886638	2.91698158796204	-1.82332795820506	0.00316990821720245	0.0333132876114356
Merged-chr19-5815259-4	chr19	5815138	5815338	+	992.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12566.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	6.32446769223217	6.27537088870777	6.44072839081554	6.38308329912625	5.87129318785488	6.23380278805771	5.71585222576169	5.50268379509245	-0.779908462189656	0.00256413881680935	0.0282746455215605
Merged-chr9-123957022-4	chr9	123956912	123957112	+	925.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11680.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	4.69211101011577	4.86675769826941	4.27566447066847	3.81397687819365	4.65533753621702	4.75418114242878	4.59726548128247	4.06092306323537	0.153364044175048	0.746411219279185	0.900106805202424
Merged-chr2-26498881-4	chr2	26498817	26499017	+	847.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	4905.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	3.50303973544554	3.61388460074023	3.9823680012308	3.4413977213911	3.70282319322469	3.49691170408285	3.70134526133014	3.38034585911974	-0.194957023221559	0.705817494865393	0.881856827576335
Merged-chr7-41633894-1	chr7	41633794	41633994	+	1000.0	f0_c57.idr	promoter-TSS (NM_001360684)	promoter-TSS (NM_001360684)	363.0	NM_001360674	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	6.61871345804605	6.30739445045917	6.49555691034227	6.37479524942759	6.48997994806966	6.2941784383111	6.61530146553378	6.27752749580515	-0.0223734118131223	0.920324022760536	0.97043423951189
Merged-chr10-86685505-4	chr10	86685407	86685607	+	971.65625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015572)	promoter-TSS (NR_015572)	-20.0	NR_015572	66263.0	Mm.392261	NR_015572	ENSMUSG00000097412	1810014B01Rik	-	RIKEN cDNA 1810014B01 gene	pseudo	4.567874750784	4.80292657466255	4.43195834933988	4.56676164761799	4.80587583082613	5.11128826780685	4.58996249267547	4.96989521184071	0.581054404794936	0.0993602304928252	0.345718426272122
Merged-chr5-93206483-4	chr5	93206398	93206598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017367)	promoter-TSS (NM_017367)	-3.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	7.09551980664304	6.93183701950089	6.51873782193752	6.62925410294094	7.23669956327456	7.21417818962311	7.40213850171823	6.95741960066828	0.56134900927006	0.011037373336874	0.0846719224458251
Merged-chr2-167765355-4	chr2	167765258	167765458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74181.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	7.98428986613922	7.77335764746284	8.01902522378838	8.16232642777069	7.78785187423672	7.71153368713638	7.92689058137582	8.10269283301238	-0.139342952732374	0.441742589424085	0.72861833833751
Merged-chr7-121269502-4	chr7	121269392	121269592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122804.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	7.30635189515322	7.46556500701744	7.39877216720133	7.3009117886201	7.4935500536238	7.43100247717785	7.26075215446931	7.23796878698864	-0.00245715831637638	0.989116077480955	0.995648451168357
Merged-chr4-127061139-4	chr4	127061062	127061262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356311)	promoter-TSS (NM_001356311)	-8.0	NM_001356311	68310.0	Mm.273806	NM_026670	ENSMUSG00000043872	Zmym1	5830412B09Rik|AW209050	zinc finger, MYM domain containing 1	protein-coding	4.93842860955752	5.52717191539081	5.26486249280344	4.92887522106625	5.75653258479349	5.6715625392121	5.57189849680636	5.32361583999885	0.734244063322126	0.0190923601200353	0.124038178933946
Merged-chr1-60904721-2	chr1	60904621	60904821	+	740.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4304.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	2.9652575037811	2.7506630787621	2.90110828461077	2.64210965894451	2.94142225145009	3.31120242353999	3.12886006153911	3.08420015362445	1.33286712340867	0.0273684529862592	0.15770937318763
Merged-chr18-61229841-3	chr18	61229735	61229935	+	970.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146086, intron 1 of 21)	intron (NM_146086, intron 1 of 21)	9336.0	NM_146086	225600.0	Mm.391106	NM_146086	ENSMUSG00000024575	Pde6a	Pdea|nmf282	phosphodiesterase 6A, cGMP-specific, rod, alpha	protein-coding	3.52276505953863	3.47736716299822	3.86286095673723	3.58152869824925	4.22565545457743	3.87691463233184	4.03348176260001	4.49696160649497	1.65183120007994	0.000475132228254677	0.00741166707756732
Merged-chr17-25678158-4	chr17	25678144	25678344	+	975.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38928.0	NM_022422	64337.0	Mm.171123	NM_022422	ENSMUSG00000025739	Gng13	1500031D04Rik|AB030194|Ggamma13	guanine nucleotide binding protein (G protein), gamma 13	protein-coding	4.31868931755379	4.13560288266221	4.58787876146763	3.68464590151757	4.27308160122279	4.26346020183499	4.11814188322084	4.47672295775627	0.19152826730377	0.676046956528434	0.867017645064726
Merged-chr9-98614197-3	chr9	98614097	98614297	+	701.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12518.0	NM_025485	64655.0	Mm.17949	NM_025485	ENSMUSG00000032459	Mrps22	3100002P07Rik|Rpms22	mitochondrial ribosomal protein S22	protein-coding	3.09910744372352	3.55755515065042	3.2982287986252	3.32627761736033	3.10183043548848	3.47401227319674	3.65428805529356	3.7139469474342	0.580213200464695	0.305092178783526	0.617575766195705
Merged-chr19-59315389-2	chr19	59315289	59315489	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033222, intron 2 of 4)	intron (NM_001033222, intron 2 of 4)	30391.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	2.81477356772404	2.77481505392416	2.81511758793149	3.09000779214793	2.80118680550469	2.57361240905036	2.80517170456173	2.54810485897318	-0.935364150933408	0.171395328517409	0.464641920346332
Merged-chr8-33666409-1	chr8	33666309	33666509	+	1000.0	f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	13171.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	2.36824703100204	2.39220035899181	2.36842426148107	2.20236264567784	3.23724744615506	2.78821009251709	3.02198248831562	3.08599264881575	4.28513450489892	1.24182036634885e-07	5.23026815718015e-06
Merged-chr3-9407187-4	chr3	9407130	9407330	+	917.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015499, intron 1 of 1)	intron (NR_015499, intron 1 of 1)	4152.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	4.14771269937118	4.03864337351466	4.25363002973693	5.00012670347233	4.35258203309462	4.5743920477198	4.65938142474549	5.053316511624	0.523996055851741	0.272210248076859	0.583744674857276
Merged-chr15-97833425-3	chr15	97833335	97833535	+	769.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	-1668.0	NM_001204276	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	3.80339768259404	3.72589934650738	3.49491226608081	3.81050149625671	3.10438079688885	3.48816004019843	3.64347404130739	3.65660240078134	-0.753627955706916	0.160070544622069	0.447934622737694
Merged-chr10-9900618-3	chr10	9900527	9900727	+	740.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081344, exon 1 of 26)	exon (NM_001081344, exon 1 of 26)	413.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	3.83135136086341	3.64282052471695	4.12682681059254	4.10652226125961	3.81347177746565	4.20688921514576	4.23211021042391	4.03334438413684	0.335215735311468	0.464176194263179	0.745275846107104
Merged-chr11-102156346-4	chr11	102156235	102156435	+	982.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029649)	promoter-TSS (NM_029649)	72.0	NM_029649	76547.0	Mm.46529	NM_029649	ENSMUSG00000020921	Tmem101	2610511E22Rik	transmembrane protein 101	protein-coding	4.94261934571724	4.9547574758647	4.6291900492418	4.5551022358688	5.14656868209375	5.00937347583932	4.95360231227523	5.19173021508408	0.623769344016644	0.0588722038225009	0.25547668145248
Merged-chr1-57393077-3	chr1	57392986	57393186	+	924.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037742, intron 5 of 7)	intron (NM_001037742, intron 5 of 7)	-13462.0	NM_001081181	68115.0	Mm.275428	NM_001081181	ENSMUSG00000025971	Maip1	9430016H08Rik|AA409999|C78988	matrix AAA peptidase interacting protein 1	protein-coding	3.03665338747169	3.6313979210365	3.60130138372421	3.56951161923813	3.50870922206587	3.61061759718058	3.58634505294123	3.54726966743441	0.248689339376035	0.646177968279119	0.851257641060492
Merged-chr9-70007154-3	chr9	70007053	70007253	+	767.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016787, exon 11 of 11)	3' UTR (NM_016787, exon 11 of 11)	-5395.0	NM_001282084	235459.0	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	4.24817401278236	4.44195863329002	4.33352048186031	4.68521774131052	3.79910363345887	3.96345856837408	4.09269659217886	3.95298585110721	-1.305664561536	0.00220163546643314	0.0251864691200971
Merged-chr19-34196778-4	chr19	34196671	34196871	+	901.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	3837.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	4.91707046651219	4.51031186298353	4.44745610359086	4.55300698857284	4.4904302178609	4.92676737446875	3.90316493048263	4.40016634515727	-0.30800758088343	0.481733764117532	0.756755039529514
Merged-chr5-142478970-3	chr5	142478870	142479070	+	789.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172725)	TTS (NM_172725)	15039.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	2.94763360206222	2.98830086373173	2.94792322892649	3.17394647118017	3.50241658824561	3.58971970799221	3.13581387463346	3.3182809237477	1.36486095409613	0.0203217939414254	0.129358341169444
Merged-chr11-116016431-6	chr11	116016332	116016532	+	891.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-3713.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	3.47276612265376	3.83704760730424	3.18929980796661	2.76298315776751	3.24760822284063	3.23969096023481	2.90179092170995	3.41913998655442	-0.585224065090973	0.386974907948575	0.688010165427041
Merged-chr8-104116635-4	chr8	104116517	104116717	+	979.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 2 of 11)	intron (NM_009868, intron 2 of 11)	-10744.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	4.67530445661774	5.02803180446019	5.56110865514704	5.38637002846935	5.23767975323057	5.18360871846685	5.32972873464593	5.10867210985632	0.00721357562278805	0.983189396333855	0.99395664486631
Merged-chr16-45736913-3	chr16	45736814	45737014	+	821.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001272070, exon 4 of 6)	exon (NM_001272070, exon 4 of 6)	6041.0	NM_001272070	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	3.28373097220077	3.5797799137154	3.28413473152113	3.86485593825417	3.0117554998317	3.33423401825389	3.14623965885866	3.55613556672818	-0.915628552954577	0.126396741234753	0.395202883564616
Merged-chr4-33033037-3	chr4	33032926	33033126	+	751.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355494, intron 1 of 6)	intron (NM_001355494, intron 1 of 6)	1646.0	NM_001355494	56228.0	Mm.259095	NM_019586	ENSMUSG00000028277	Ube2j1	0710008M05Rik|1110030I22Rik|NCUBE-1|Ncube|Ncube1|Ubc6p	ubiquitin-conjugating enzyme E2J 1	protein-coding	3.75756178604746	3.41725954455515	4.02656183233913	4.05991095097546	3.22471232611706	3.66035883481356	3.27368819246683	3.85165434127047	-0.978471578965421	0.085318224125712	0.318041894659862
Merged-chr6-50874076-4	chr6	50873983	50874183	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97968.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	3.83953428242188	3.54963196264667	3.61863803294676	3.78036772181335	4.27812259246165	3.85373206369758	3.87348308752953	4.02658364259028	0.903357329387114	0.0488356417100817	0.228403452347848
Merged-chr9-89228313-4	chr9	89228201	89228401	+	954.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359993, intron 2 of 2)	L1MB2|LINE|L1	16917.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	4.77192683637452	5.07029308225719	5.23784131710565	5.08509507465372	4.96228048278495	4.98744328511602	4.86447910156807	4.64356696888696	-0.355266854974047	0.282107846248321	0.594254538219845
Merged-chr16-36656154-4	chr16	36656048	36656248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	9929.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	8.16241381927782	8.3472394798255	8.12021376391064	8.04871835111689	8.26874424306809	8.28511803439463	8.21336632903949	7.98141652076971	0.0290004178012442	0.862054970719472	0.947936227886533
Merged-chr12-108767052-2	chr12	108766952	108767152	+	718.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26259.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	2.87927659980835	2.7220995734717	2.87968332476097	2.64099848994546	2.71744166575552	2.8051451948034	2.48338016407757	2.56181413654472	-0.639873261907088	0.343557461658457	0.65224333888351
Merged-chr17-33940516-6	chr17	33940452	33940652	+	988.8095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020603)	promoter-TSS (NM_020603)	-171.0	NM_020603	57315.0	Mm.2437	NM_020603	ENSMUSG00000024312	Wdr46	2310007I04Rik|Bing4|C78447|C78559	WD repeat domain 46	protein-coding	4.45281386533964	4.67976712204127	4.62207078358205	4.25391376667234	4.65331161833694	5.04105515073968	4.56066541582976	4.57897145250939	0.479350745011386	0.199924225416859	0.50185984431534
Merged-chr10-125213995-4	chr10	125213883	125214083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94833.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	5.59983463674934	5.26300875959513	5.60081159901592	6.11391816257866	5.6648531749142	5.27107801637616	5.64882219281968	5.67360130291276	-0.207604929774113	0.515164457018528	0.777410339342814
Merged-chr5-150840309-4	chr5	150840193	150840393	+	947.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112314.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	4.70990658443731	4.47043065733636	5.01384366251042	4.80021543371333	4.7344540541735	4.27699680733854	4.95884034204666	4.58804902301282	-0.198497821669777	0.602453910752386	0.827695321535719
Merged-chr2-168207453-4	chr2	168207357	168207557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009628)	promoter-TSS (NM_009628)	-345.0	NM_001310088	11538.0	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	7.62458820548477	7.93066873191023	7.6079196128265	7.60326427014806	7.93909292924613	8.21057643457064	7.95555965279747	7.96170943798149	0.416279500489224	0.0184073517193356	0.121181732152293
Merged-chr15-94543646-4	chr15	94543546	94543746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029926)	promoter-TSS (NM_029926)	-14.0	NM_029926	266632.0	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	8.2042524019221	8.06611714381493	8.38456155107014	8.03724619651369	8.25357062179619	8.29617145917673	8.76141514141273	8.27598527147789	0.303201744871173	0.106626853588019	0.360051212976317
Merged-chr1-181016691-4	chr1	181016603	181016803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010145, intron 1 of 8)	intron (NM_010145, intron 1 of 8)	866.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	6.14749225080513	6.06272652713286	6.7113441829029	6.85450777081697	6.33113128846403	6.04204614738773	6.40276488338464	6.69274753107096	-0.167050440151466	0.558728910628969	0.803345041538902
Merged-chr12-44276168-3	chr12	44276042	44276242	+	760.209534	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026164, intron 1 of 9)	L1MA4|LINE|L1	6988.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	3.24060254946634	3.40956519111028	3.43012219810309	3.17907359332267	3.9826361672695	3.66076717481883	3.41714086624238	3.69297578997739	1.31933794866263	0.0100117956132512	0.0789879849208165
Merged-chr15-86186805-3	chr15	86186720	86186920	+	761.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145475)	promoter-TSS (NM_145475)	-679.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	3.08800080296264	2.87663556171777	3.25979284180205	3.26140667849977	2.91396383228511	3.13538021607837	3.24643208612433	3.20339965664372	-0.0348089825940308	0.952955737082949	0.983277820010102
Merged-chr14-61052380-4	chr14	61052274	61052474	+	952.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1-int|LTR|ERVL-MaLR	-5519.0	NM_013869	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	4.49720624030936	4.39801881936123	4.83540304412075	4.64365787557367	5.22296869352774	5.01021306367928	4.88378411777301	5.34380281710327	1.05357343047102	0.00205116109404519	0.0238327775894617
Merged-chr3-59120134-4	chr3	59120027	59120227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287119, intron 1 of 2)	intron (NM_001287119, intron 1 of 2)	10635.0	NM_001287124	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	6.77739868958865	6.50927902523994	6.77859239570185	7.073374157256	6.52992535383427	6.10088837820871	6.38732101951128	6.39746041868617	-0.638009650152215	0.00717957849927529	0.0620866502247498
Merged-chr1-74808319-4	chr1	74808220	74808420	+	973.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16301.0	NM_009518	22409.0	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	5.50732504972565	5.43066753816591	4.88250295854836	5.39454193454514	5.24088008059089	5.45581932636937	5.75713734689751	5.03827012549029	0.120343968565239	0.716713684564107	0.886677037517834
Merged-chr14-25769166-4	chr14	25769062	25769262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101433)	promoter-TSS (NM_001101433)	-306.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	5.44512999268643	5.41038304556466	5.29713818843306	5.61464360294937	5.28306242902685	5.53317041017295	5.55123202409939	5.38475901869395	-0.0467967341438081	0.868606951650537	0.950762137632278
Merged-chr4-24585072-4	chr4	24584975	24585175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149739, intron 17 of 24)	intron (NR_149739, intron 17 of 24)	88624.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	5.15867498771406	4.95646529465554	5.22334618335986	5.39716349444597	5.04550231910059	5.36559591887384	5.34312490886416	5.25044833559162	0.0750966097080428	0.808112155769661	0.925959677004648
Merged-chr2-90445745-2	chr2	90445645	90445845	+	826.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 20 of 23)	intron (NM_008982, intron 20 of 23)	33429.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.10083168690456	3.21202664289597	3.39222437594373	3.01179987425457	2.93968109704181	3.27810133063275	3.52325883036543	3.33706285477083	0.378815107835411	0.514104840832294	0.776898400611478
Merged-chr5-36720915-4	chr5	36720807	36721007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-24886.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	6.25398761182333	6.81606718353583	6.43416154472915	6.2958294611012	6.09821182778307	6.3726427059876	6.20374487396225	5.94803824432121	-0.46097233403396	0.0668917078834591	0.275840616154147
Merged-chr18-4336440-7	chr18	4336357	4336557	+	989.5064699999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 5 of 7)	intron (NM_007746, intron 5 of 7)	16496.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	4.7296061488604	5.03548337486315	4.53102871468247	4.60835535921431	4.58456275523515	4.57280273601555	4.51059580731375	4.72724372042869	-0.295108250467989	0.413437010259476	0.708401031686854
Merged-chr16-55691225-4	chr16	55691108	55691308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAGCC)n|Simple_repeat|Simple_repeat	130930.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	6.68613281877392	6.96194331404363	6.14557811872564	6.2308570506325	6.92187532476765	6.94820176335587	6.65310632930204	6.18537415058382	0.24103667755453	0.399998905464443	0.698016583884129
Merged-chr7-19747496-4	chr7	19747381	19747581	+	969.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008990, intron 1 of 8)	intron (NM_008990, intron 1 of 8)	2092.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	5.42371942076082	5.92263487950128	5.13706625060706	4.64756147737903	5.93465083746356	5.65571126069344	5.24651167719856	5.16879171040613	0.309138822151542	0.437379311143891	0.725658989975083
Merged-chr2-113433984-4	chr2	113433885	113434085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010230, intron 3 of 19)	MTD|LTR|ERVL-MaLR	-7079.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	5.97360277713378	5.90211387688997	5.92978503588168	6.51909268954603	5.84869761861175	5.80034208760485	5.94416155780259	5.99222687228897	-0.369807434861482	0.178391954305876	0.474235309662659
Merged-chr8-117233424-4	chr8	117233329	117233529	+	935.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-23590.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.83721105317554	4.80049290057713	4.80258213507056	4.50123142824112	4.48581274779885	4.86354964751247	4.9144185868475	4.60594324124377	-0.0156221248325026	0.965259154553239	0.987724662415875
Merged-chr2-22743690-2	chr2	22743590	22743790	+	947.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TGAG)n|Simple_repeat|Simple_repeat	-30637.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	3.32348216050695	3.09931707153951	3.32393745080804	3.11169997469665	3.05594495782782	3.3804853342061	3.31076856555598	3.62237752031333	0.511365806180684	0.358392122815029	0.664380976348606
Merged-chr1-95598867-3	chr1	95598761	95598961	+	657.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009183, intron 4 of 4)	intron (NM_009183, intron 4 of 4)	68733.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	3.66163529277439	3.38205007505452	3.56055926743275	3.74680514829081	3.62646598380137	3.56471923739596	3.11760744407979	3.55856467949879	-0.372097169162074	0.489308213706578	0.761644273605242
Merged-chr4-95905455-4	chr4	95905345	95905545	+	896.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 14 of 15)	intron (NM_001113412, intron 14 of 15)	61590.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	4.05929484005133	4.07183717348318	4.05987405443208	4.42615685678752	4.24579793380386	4.0780398694837	4.34931971671951	4.19937014523808	0.0974881532175846	0.815208542414589	0.928710624683246
Merged-chr5-121660567-4	chr5	121660528	121660728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028227)	promoter-TSS (NM_028227)	65.0	NM_001289543	72399.0	Mm.153372	NM_028227	ENSMUSG00000029458	Brap	3010002G07Rik|BRAP2|IMP	BRCA1 associated protein	protein-coding	6.06393365627072	5.86711447413033	5.77928419508674	5.74558322385019	6.09601559476297	5.68385561146988	5.77427597901518	5.77519189635234	-0.00802758149153556	0.975516897304809	0.991324270933399
Merged-chr16-45038810-3	chr16	45038719	45038919	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55192.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	4.83695110320126	4.82756958976613	5.45030421505358	5.5095339754222	4.08404676442112	4.55408977846788	4.29767023803952	4.20366194077385	-1.9978980387946	9.80806802287311e-07	3.44244809566117e-05
Merged-chr19-24989088-4	chr19	24988990	24989190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10439.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	7.10370660997779	7.30801940561278	7.11681915179668	7.13097275391659	7.19126724066739	7.26981093596462	7.2465265652761	7.18086101956828	0.0727018832530296	0.686424625314505	0.871787672169905
Merged-chr9-41069119-2	chr9	41069020	41069220	+	885.75	f0_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	10386.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	3.82299332851495	4.19891138112945	4.05077797173143	3.99667494223277	3.19755461779502	3.39446170309587	3.65054123422722	3.71792647507816	-1.65718249180198	0.00159955950810394	0.01965050849626
Merged-chr1-170903562-4	chr1	170903472	170903672	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	9369.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	5.48625237995583	5.01057130656475	5.61593976647747	5.95298744631884	5.39920940475601	5.05707242645357	5.3172548713485	5.42797724020956	-0.46209280464891	0.169628841347437	0.462321889663741
Merged-chr3-116186616-4	chr3	116186519	116186719	+	730.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56931.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	3.76815065001433	3.53035670417768	3.59152639242781	4.08113836862478	4.08013969414811	4.18862933364037	3.80736653478405	4.18691092163788	0.797590772675857	0.104528475789076	0.355556643135185
Merged-chr1-156014952-3	chr1	156014863	156015063	+	733.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160018, intron 8 of 9)	intron (NM_001160018, intron 8 of 9)	19854.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	3.8317260788903	3.36590265884518	3.83234611750889	3.7371299669321	3.38469289201855	3.36032106412572	3.16893872729638	3.37312101552884	-1.28878691366973	0.0172447476109231	0.115754799151065
Merged-chr8-126667056-4	chr8	126666962	126667162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73626.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.31163380560358	5.01346422890601	5.2838650769434	5.4986330612485	5.16454434247456	4.69922951502961	5.25753043269654	5.02398884432979	-0.445380730598915	0.174814305856719	0.469409516997715
Merged-chr3-41580072-4	chr3	41579974	41580174	+	937.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130186, intron 1 of 10)	intron (NM_001130186, intron 1 of 10)	15194.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	4.79491833730531	4.13616522367436	4.63146665517052	4.37642909123425	4.47023453683587	4.01516340654307	4.33786631979075	4.16744435753898	-0.545600177364971	0.199238003713656	0.501062144166142
Merged-chr5-99965640-4	chr5	99965559	99965759	+	746.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077265, intron 4 of 8)	intron (NM_001077265, intron 4 of 8)	13279.0	NM_001077266	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	4.41255435887215	4.25866417702612	4.56212338950495	4.18150160632178	4.21747042818534	4.27675701885388	3.92551404596059	4.19583673050896	-0.467278788948531	0.254209044176382	0.565571827007563
Merged-chr7-19218086-3	chr7	19218024	19218224	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175668, intron 1 of 1)	intron (NM_175668, intron 1 of 1)	5586.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	3.71938554927281	3.82141066602725	3.81760593117189	3.68056858436405	3.61771436331741	3.78594099422551	3.48654328103212	3.49724434492807	-0.484581529685992	0.308153863051239	0.620500829390482
Merged-chr1-106901618-4	chr1	106901510	106901710	+	958.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32839.0	NM_027971	71869.0	Mm.321740	NM_027971	ENSMUSG00000059956	Serpinb12	2300003F07Rik|4833409F13Rik	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12	protein-coding	4.75920586920426	4.73190609105798	5.15889894983471	4.4584879644523	4.39975545905402	4.41516781474389	4.58509290949185	4.68245957235914	-0.573989403802289	0.136377337741689	0.41091739052877
Merged-chr4-44973615-4	chr4	44973521	44973721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7773.0	NM_080289	76238.0	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	5.42788783002068	5.61463441212006	5.27901218124503	5.43177255333378	5.04946314767752	5.35711646631649	5.63160587237895	5.42502896559609	-0.129867087342443	0.664518675869625	0.861009602629657
Merged-chr7-127713258-4	chr7	127713164	127713364	+	975.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301283, intron 1 of 2)	intron (NM_001301283, intron 1 of 2)	327.0	NM_001301283	13019.0	Mm.389954	NM_007795	ENSMUSG00000042340	Ctf1	CT-1	cardiotrophin 1	protein-coding	5.78747629022392	6.52332110924426	5.76336841867415	5.35320263050597	6.20000314679328	6.16988333693586	5.80739610317791	5.37881507283961	0.00633682078345895	0.985807067935442	0.994788540667462
Merged-chr4-88390131-4	chr4	88389959	88390159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 35 of 43)	intron (NM_001081184, intron 35 of 43)	48867.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	4.97106931238671	4.96889676362009	4.97190778239344	4.65171603094958	5.12418932260133	4.58245397833318	4.65480501193337	4.86564789803028	-0.0939063662589446	0.791918976911672	0.919401124049459
Merged-chr11-116306766-4	chr11	116306651	116306851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016857)	promoter-TSS (NM_016857)	-1.0	NM_001347636	53413.0	Mm.22530	NM_016857	ENSMUSG00000020792	Exoc7	Exo70|sec70	exocyst complex component 7	protein-coding	6.23972007129454	6.27536982582764	5.58790895449245	5.85460801259514	6.26977667701271	6.13217834878595	5.80648930036716	6.28978357336591	0.19642513098061	0.479580784380833	0.755306574874285
Merged-chr10-84571305-4	chr10	84571211	84571411	+	981.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5636.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	5.62267540099176	4.93847568843916	5.27465066936823	5.53207436560239	5.72895736979506	5.77205418760991	5.73815055860076	5.6936737498864	0.605724186476679	0.0395500916719444	0.200274574643416
Merged-chr9-15301581-4	chr9	15301483	15301683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133732)	promoter-TSS (NM_133732)	24.0	NM_133732	70984.0	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	6.7101443292548	7.1221524721419	7.2952951833258	7.72726924114156	7.03274824537843	6.82425980703271	7.02599040682479	7.26974304679591	-0.315973214780853	0.215082539907927	0.521046864244511
Merged-chr5-113773490-2	chr5	113773390	113773590	+	835.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025526, intron 1 of 4)	intron (NM_025526, intron 1 of 4)	678.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	3.24819517669696	2.97703814391792	3.02396825555628	2.89700725334933	3.09221487684746	3.07025015452493	2.81787921235435	3.19426262955986	0.0668946142753711	0.910522928595134	0.96669834733672
Merged-chr15-78579648-4	chr15	78579557	78579757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155437, intron 1 of 1)	intron (NR_155437, intron 1 of 1)	1932.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	5.07913127747074	4.90807856472668	4.90902064473577	4.88532582017144	5.01369506533947	5.28096502359432	4.73342119070632	5.13871129486173	0.217793903590524	0.500423802556281	0.768850577358824
Merged-chr13-98946746-4	chr13	98946663	98946863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-20379.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	5.23459192427923	5.352775899029	5.544377549148	5.46307608181614	5.06617502266806	5.24289562849504	5.24094591471484	5.32381474410301	-0.352108672141827	0.224446100815554	0.532794697680518
Merged-chr8-115632378-4	chr8	115632273	115632473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74521.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.91869635010736	5.17390658121468	5.12052694638254	4.98955138910101	5.47676073018284	5.51844051795087	5.37372590004508	4.66561822611878	-0.0841279724006532	0.82826043077721	0.934114195210036
Merged-chr2-93566359-4	chr2	93566215	93566415	+	956.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-76119.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	4.05627978980456	4.16835143081237	4.16160731314557	4.22947007262186	4.752182470972	4.33847076709173	4.49125153068937	4.61949830891551	0.947131810651644	0.0133985361753713	0.0970909399635035
Merged-chr3-9879676-4	chr3	9879584	9879784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46005.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	5.14168197498402	5.02568797916675	5.43366232207091	5.21526145959326	5.14513538349993	5.34833543418711	4.98046282287719	5.17133191554428	-0.0843887109397611	0.782254196224685	0.91529005173258
Merged-chr8-117340431-4	chr8	117340344	117340544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-8726.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	7.64275128375157	7.4119167766751	7.73233670122347	7.87120022402122	7.45872523281311	7.10102945789726	7.56441037146254	7.57046142040287	-0.319343534836823	0.110461952499263	0.367014238608783
Merged-chr8-86827390-1	chr8	86827290	86827490	+	673.0	f0_balb.idr	Intergenic	RMER19C|LTR|ERVK	57868.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	2.78934669769727	2.63013270568226	2.61693813386176	2.87885740623811	2.26539945376058	2.28298055455941	2.26122573964898	2.55247911272209	-2.49226212631747	0.00332380026903057	0.0346035950488997
Merged-chr12-44265982-4	chr12	44265869	44266069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-3185.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	6.42213482998043	6.31895665393432	6.55621104254934	6.58084638027084	6.70513229085523	6.41194457244008	6.58395897979157	6.18875571499872	0.0263011223554555	0.909050271068511	0.966183205082657
Merged-chr8-108721035-4	chr8	108720918	108721118	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	6374.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	5.03774949576549	4.64309745447254	5.03859190231903	5.36442729938515	5.21696667002025	5.06916415977902	5.08108727201188	5.41984615183977	0.262903348933093	0.442152342168251	0.728953187628121
Merged-chr17-6779001-4	chr17	6778894	6779094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	3786.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	5.96553164109074	6.17480635550649	5.58229675459788	5.62199000207472	5.58412531207099	5.73108497596236	5.58181519837585	5.78490497519674	-0.301777670466516	0.284076459587612	0.596035490823689
Merged-chr1-87828501-4	chr1	87828375	87828575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009118, intron 10 of 15)	intron (NM_009118, intron 10 of 15)	24795.0	NM_009118	20215.0	Mm.1276	NM_009118	ENSMUSG00000056055	Sag	A930001K18Rik|Arr1|Irbp|arrestin	S-antigen, retina and pineal gland (arrestin)	protein-coding	7.27399035349695	6.97703567755681	7.57017976446307	7.64902833090963	6.92574380115015	6.78408563988281	6.92217655582006	7.21708706662225	-0.584714096676139	0.00992506933525539	0.0785126150493602
Merged-chr9-78586987-3	chr9	78586862	78587062	+	865.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172773, intron 1 of 10)	intron (NM_172773, intron 1 of 10)	1083.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	3.38320245720888	3.20570420705348	3.66017866572278	3.28730782692981	3.15437228418971	2.91863812620672	3.02050616796955	3.09443148042971	-1.31331971662799	0.0281446655368057	0.160605074657422
Merged-chr2-128739547-5	chr2	128739489	128739689	+	821.286682	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	40674.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	3.91294813925673	3.86970811409454	3.66549254667688	4.02824875239381	3.71969410554106	3.66695665834151	3.53856556266909	3.60769549395387	-0.746418781017113	0.114032170522532	0.373507701699108
Merged-chr5-121999790-4	chr5	121999685	121999885	+	862.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007804, intron 2 of 22)	intron (NM_007804, intron 2 of 22)	48040.0	NM_007804	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	3.69443254817102	4.12826245972507	4.53593683070899	4.59704274047547	4.18484229667283	4.00060364677268	4.11870021505573	3.98536281570874	-0.548544515262584	0.249728337355286	0.560773970743009
Merged-chr5-64376017-4	chr5	64375908	64376108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR79|LTR|ERVL	91934.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	5.77617919817952	5.80711380037394	5.56624394424883	5.39851373107921	5.97294160758131	6.08885472552772	5.90632602732645	5.74857789604534	0.495968408656318	0.0609580830060423	0.260925815760845
Merged-chr11-106419692-4	chr11	106419617	106419817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 9 of 21)	intron (NM_023913, intron 9 of 21)	-36936.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	6.33627572149699	6.17146644212526	6.26849412848359	6.15358648740583	5.85228643308585	5.75957000887763	5.48896994546267	6.24616373364966	-0.568814859090753	0.0321615987177418	0.175352771744937
Merged-chr16-57390471-4	chr16	57390307	57390507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	37130.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	5.27589416129084	5.44438883243458	5.94587686956577	5.26911587167883	5.26173124493298	5.28268400918803	5.70817331195406	5.56371226513107	-0.0681819135037058	0.830716474631025	0.935017440942484
Merged-chr2-160451634-4	chr2	160451555	160451755	+	909.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84590.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	4.40836297082312	4.14885637199086	4.08013241674081	4.32069932275067	4.71489583003652	4.53760143691621	4.42977274909912	4.40626111615475	0.668910146768457	0.0805904674179303	0.307896356216376
Merged-chr10-111189335-4	chr10	111189218	111189418	+	948.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003717, intron 1 of 22)	MTC|LTR|ERVL-MaLR	24516.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	5.03555653048605	4.52068364738936	5.09622758922133	5.15940199846912	4.7632837032161	4.49804619651023	4.74118615602508	4.50981875052528	-0.706531399861422	0.0546316618516393	0.244047928702865
Merged-chr1-92675984-4	chr1	92675891	92676091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27150.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	5.44009912942326	5.53075990638967	5.35342789943169	5.49534031612472	5.09671235216773	5.52825804656923	5.52113009418632	5.46511330687254	-0.104499133183309	0.716393408179236	0.8866074790069
Merged-chr2-101830685-4	chr2	101830547	101830747	+	786.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	8333.0	NM_001110849	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	3.41040938183481	3.70238616116327	3.63437530407489	3.28871899034847	3.53845223523484	3.64427086268734	3.45737463820487	3.77734694175578	0.315240820726564	0.53276850153872	0.788274148708907
Merged-chr12-76345949-3	chr12	76345856	76346056	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21065.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	3.43055601917495	3.30959182492082	3.37473315663247	3.42085504117214	3.58100001467117	3.48784932063692	3.47097826685472	3.31428097650764	0.290158510200727	0.56369781495647	0.806436603504976
Merged-chr1-93124227-3	chr1	93124123	93124323	+	819.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11017.0	NM_001276710	11611.0	Mm.7457	NM_016702	ENSMUSG00000026272	Agxt	AGT|Agt1|Agxt1|SPT	alanine-glyoxylate aminotransferase	protein-coding	4.10160494330657	3.93200485238493	4.49588168525529	4.76901659951578	3.66778069079329	3.58408474095796	3.88699087828573	3.78902986927499	-1.76167491359276	0.000417027281751738	0.00665118120115487
Merged-chr18-82843746-4	chr18	82843658	82843858	+	853.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-12139.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	4.05375621816331	4.24689923407534	4.05433548941032	4.14756722575341	4.19732587101075	4.17802866680223	4.26404922618385	4.28074687029279	0.246404333628629	0.530851330797594	0.786869282179433
Merged-chr14-57417368-4	chr14	57417260	57417460	+	937.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	-6711.0	NM_009376	21821.0	Mm.4653	NM_009376	ENSMUSG00000040040	Ift88	AW552028|Tg737|Tg737Rpw|TgN737Rpw|Ttc10|flexo|fxo|orpk|polaris	intraflagellar transport 88	protein-coding	4.50122993350021	4.38308190688563	4.32990695015299	4.60689289197183	4.61600195451363	4.25729166196741	4.63100399251855	4.41595576552547	0.0587590964969926	0.876085512292644	0.953397811847021
Merged-chr2-61645649-3	chr2	61645547	61645747	+	777.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149323, intron 8 of 9)	intron (NR_149323, intron 8 of 9)	52550.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	3.46216324876679	3.33647374836675	3.96880556783044	3.71120744489567	3.14250689294352	3.63591049969115	3.13604445383792	3.34281603244199	-1.07936559649682	0.0607274038869566	0.2603611541543
Merged-chr1-89043136-4	chr1	89043038	89043238	+	814.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	27025.0	NR_040471	73475.0	Mm.491040	NR_040471	ENSMUSG00000099378	1700067G17Rik	-	RIKEN cDNA 1700067G17 gene	ncRNA	3.80288890080786	3.91440097504042	3.69422180273771	3.65270999112138	3.87474316644834	3.86888937167548	4.02466179043764	4.16268813238341	0.638456911061649	0.147874081977462	0.429315547623028
Merged-chr16-13286671-4	chr16	13286559	13286759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122667, intron 2 of 16)	RMER19A|LTR|ERVK	21580.0	NM_181860	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	6.7800940052754	7.16375665614562	6.8666454050043	6.44776921686181	7.22235509976489	7.04367653501084	7.2375764500014	6.79108930306287	0.360720901234945	0.127105054118283	0.396598748337947
Merged-chr5-116011876-4	chr5	116011778	116011978	+	960.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12550.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	5.58235369977352	5.56312271944587	5.90369531442636	6.12417258387058	5.02848138024764	4.96722326593098	5.38921233816328	5.47064296496058	-1.04262982083016	0.000932444493609167	0.0127195221561148
Merged-chr3-115715038-4	chr3	115714901	115715101	+	950.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007901)	promoter-TSS (NM_007901)	54.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	4.58566842019839	4.6166375577065	5.22594228108074	4.61963738766466	4.34575604681657	4.24138506427097	4.20409958729999	4.50144151229372	-1.01949087324525	0.0112415173609631	0.0857528629553094
Merged-chr17-46904036-4	chr17	46903942	46904142	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6443.0	NM_008938	19133.0	Mm.291370	NM_008938	ENSMUSG00000023978	Prph2	AOFMD|AVMD|Nmf193|PRPH|RP7|Rd-2|Rd2|Rds|Tspan22|rds	peripherin 2	protein-coding	5.2547818630691	5.30406935839941	4.93190532833939	5.41772446329233	5.3486399701879	5.46181465913787	5.58505209305156	5.51003918768724	0.386809140070896	0.191259124925384	0.490669787459502
Merged-chr7-19335847-4	chr7	19335753	19335953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-9218.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	5.62227487741883	6.12939777732234	5.56357776488204	5.65480751287878	6.30519274448197	6.19695547037946	6.24015470326668	6.26793492582288	0.770668062206672	0.00252702861281339	0.0279911873064806
Merged-chr5-103763162-4	chr5	103763069	103763269	+	891.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	8596.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	4.42052040361792	4.43596559396344	4.33730833585656	4.14381921023771	4.48907668608722	4.27680076081971	4.18228438137468	4.3771772775032	0.0395669339564584	0.919123333532382	0.970285021467879
Merged-chr6-114843051-4	chr6	114842939	114843139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	78782.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	5.77884233877002	5.76891708714628	5.62821661745491	5.52592775137094	5.83387932863896	5.93010648603288	5.51732625178257	5.86749555303505	0.211119479128954	0.42281519500451	0.714924316998129
Merged-chr9-107634160-4	chr9	107634065	107634265	+	768.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	1177.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	3.50822923266916	3.49415825966612	3.67974855141997	3.55390623713187	3.59829598209495	3.90319695103854	3.8602431184889	3.96346147774201	0.823984145515188	0.0783600743306143	0.303002727744027
Merged-chr7-101310833-4	chr7	101310722	101310922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6264.0	NM_001360460	56018.0	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	7.6314079865935	7.8162593705486	7.37116762987736	7.14951745863019	7.6152395409389	7.83489525668594	7.66869197625461	7.43670075629652	0.179396180527509	0.399226050914118	0.697288631090116
Merged-chr2-59042846-4	chr2	59042754	59042954	+	921.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	intron (NM_001362394, intron 1 of 13)	117829.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	4.32962954770804	4.49733682624863	4.74249465172799	4.1903790296139	4.75169161329458	4.7264878393605	4.26262516466229	4.93427581718848	0.547675355224008	0.166031509391902	0.457050578450949
Merged-chr6-113837957-4	chr6	113837870	113838070	+	820.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 2 of 19)	intron (NM_001036684, intron 2 of 19)	53569.0	NM_001036684	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	4.09766897189039	4.02732782346482	4.24117727274885	4.70525143703615	4.14337642278274	3.94147984789256	4.3496115536865	4.48346097027877	-0.171972136507864	0.705095853551937	0.881587544161158
Merged-chr6-56909098-4	chr6	56909023	56909223	+	914.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360963, intron 1 of 9)	intron (NM_001360963, intron 1 of 9)	-7237.0	NM_001252374	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	4.1967323383033	4.5875246729759	4.38935861849593	4.52943432507934	4.63025091024359	4.51843740655383	4.53538987316536	4.55357689508657	0.26499123403542	0.470210146270653	0.748973227079762
Merged-chr3-107630746-4	chr3	107630647	107630847	+	880.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153563, intron 1 of 20)	intron (NM_153563, intron 1 of 20)	963.0	NM_153563	229707.0	Mm.278643	NM_153563	ENSMUSG00000014601	Strip1	6330569M22Rik|6530401O14Rik|Fam40a	striatin interacting protein 1	protein-coding	4.12813888148285	4.05042820051711	3.97438309346493	4.12835999667292	4.62945670915671	4.2542541037948	4.40918801773199	4.17386477520118	0.767780377958654	0.0562781785514092	0.248413779489107
Merged-chr18-65534254-3	chr18	65534084	65534284	+	924.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 1 of 6)	intron (NR_105742, intron 1 of 6)	-46046.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	2.64964768633651	2.5812443907736	2.57508124475382	2.868348598999	2.72906879177622	2.96243526881973	3.30273519734073	2.91214577193467	1.3527579723422	0.0510949849247142	0.234622923163424
Merged-chr4-133650188-4	chr4	133650083	133650283	+	908.3916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	-16754.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	4.51338101253113	4.54053255611008	4.42480198124896	4.52469664790413	4.88564032132249	4.80948236498284	4.72714485206713	4.63439253107426	0.577066822685963	0.0915862205394486	0.330713047472474
Merged-chr1-172619425-4	chr1	172619334	172619534	+	773.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13540.0	NM_026725	68440.0	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	4.29018747072677	4.25359739907699	3.89603734011289	3.77772201160373	4.71963461195688	4.13150399641858	4.22835417751301	4.20018210412846	0.72027881212934	0.106520205937177	0.35983112991326
Merged-chr19-57355637-4	chr19	57355558	57355758	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040316, intron 1 of 2)	intron (NR_040316, intron 1 of 2)	5241.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	4.51605635915121	4.16937263737176	4.73415717291696	4.40449275926149	4.18669770434684	4.52219899106136	4.60791867520887	4.2517931594662	-0.155581221796811	0.697421012782693	0.877825471129288
Merged-chr15-91254329-4	chr15	91254239	91254439	+	866.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62332.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	4.48581938342163	4.06716903123389	4.44874052893596	4.79070305960822	4.11741053645555	4.00114876059111	4.07990879047768	3.98970659191661	-1.08439508110696	0.0123529108243804	0.0916572333543802
Merged-chr2-90504945-4	chr2	90504848	90505048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-25774.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	8.43431409331614	8.66655406222273	8.63874497561913	8.53990893170217	8.36745129089875	8.5503511222835	8.41176707473592	7.99244413096314	-0.286418061467442	0.100740663121275	0.348426611288108
Merged-chr6-24160001-3	chr6	24159901	24160101	+	929.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019481, intron 1 of 14)	intron (NM_019481, intron 1 of 14)	8091.0	NM_019481	55961.0	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	3.33784258948085	3.98329453376874	3.9923128152064	3.6232206030671	2.84705022787224	3.03100322653817	3.06168175590614	3.14134651269814	-3.0761212803698	8.19948088345833e-06	0.000230684130357186
Merged-chr9-44603653-4	chr9	44603552	44603752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER89|LTR|ERV1	-1240.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	5.70321568607852	6.41701695118884	5.8149459504931	6.11361065177624	6.31929052823217	6.64027959973787	6.18913826136492	6.46130520515389	0.538934422433061	0.0439406677358872	0.213637485571907
Merged-chr10-78373031-7	chr10	78372896	78373096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21296.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	5.6872883519531	5.85639079449883	5.87650852802922	5.46222649704971	5.13693344490501	5.88828346598628	5.68433444640036	5.91521110305174	-0.0692254894433331	0.823098224945588	0.932185203682946
Merged-chr18-65376246-3	chr18	65376164	65376364	+	955.35553	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037294, intron 2 of 12)	intron (NM_001037294, intron 2 of 12)	17624.0	NM_001037294	225638.0	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	4.11157588835731	5.05681957699894	4.42044173862698	4.28434368528679	3.94871075536595	3.96287669956482	3.88167946689214	3.89492007146788	-1.5150963917675	0.00132638663160261	0.0169255779940556
Merged-chr8-111237478-4	chr8	111237382	111237582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	21720.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	5.5017355456491	5.55474296952285	5.93601691048072	5.91660495297843	5.51330908031249	5.52834575760837	5.63566128348848	5.46982095877001	-0.364400804154244	0.187485002837052	0.485890952737612
Merged-chr4-108406575-4	chr4	108406475	108406675	+	974.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024198, exon 1 of 3)	exon (NM_024198, exon 1 of 3)	138.0	NM_024198	67305.0	Mm.20164	NM_024198	ENSMUSG00000028597	Gpx7	3110050F08Rik|AI327032|GPX6	glutathione peroxidase 7	protein-coding	4.61118408238402	4.66515919150602	5.04475828405599	4.72809158180316	4.9884983540164	4.82949671709649	4.75064822280286	4.84347219677524	0.193380825069551	0.566727782752238	0.807979871732933
Merged-chr8-124744866-2	chr8	124744736	124744936	+	631.75	f0_balb.idr|f1_balb.idr	intron (NM_001081120, intron 1 of 1)	intron (NM_001081120, intron 1 of 1)	6973.0	NM_001081120	69627.0	Mm.271600	NM_001081120	ENSMUSG00000043068	Fam89a	2310031A18Rik	family with sequence similarity 89, member A	protein-coding	2.949586975093	2.96804330323407	3.0542948198697	2.75495246913204	2.497846938299	2.52473373138779	2.49326867296974	2.57272199013581	-2.27729024566495	0.00238915544179235	0.0267723071774776
Merged-chr19-55740844-6	chr19	55740759	55740959	+	842.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331147)	promoter-TSS (NM_001331147)	-951.0	NM_001331147	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.33071923635013	3.66943262062194	3.33113900221045	2.9527755122138	3.49667762860284	3.78049338587259	3.37898934100016	3.65759741934676	0.813524906986421	0.148401326528731	0.430130539643714
Merged-chr8-72586223-1	chr8	72586123	72586323	+	1000.0	f1_c57bl6.idr	non-coding (NR_151663, exon 3 of 3)	non-coding (NR_151663, exon 3 of 3)	14400.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	2.6388215611622	2.87345789679374	2.9187110019948	2.43730242370198	3.40675963486048	2.96479809123783	2.96880976974487	3.03764605027236	1.72451792134361	0.0105889040331707	0.0823004586347521
Merged-chr1-171466769-4	chr1	171466643	171466843	+	970.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	29182.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	5.11686671750323	4.82557686071746	4.53363551668283	5.13069673720756	5.265120234858	5.25811861421739	4.96184627345754	4.94741218867674	0.352363197598413	0.306628527926159	0.619051127874117
Merged-chr3-79234269-4	chr3	79234163	79234363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	21344.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	5.88201152908204	5.44244667206935	6.16976079632051	6.36595262735562	5.96566797223952	5.1824011466722	5.91970707816411	6.03024706336197	-0.316001309841749	0.345696487639971	0.65400622724127
Merged-chr6-54936743-3	chr6	54936642	54936842	+	751.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 7 of 11)	intron (NM_001171007, intron 7 of 11)	34919.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	2.93856012225	3.10252738045271	3.32195843084004	3.34794762597283	3.45471356037916	3.31738081488581	3.41380816744098	3.32015444867126	0.65263403112434	0.243702946002343	0.554713292984908
Merged-chr3-130691546-4	chr3	130691445	130691645	+	896.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	17899.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	3.76418100670669	4.01740190850781	4.14186584518362	4.18634686521277	4.21169041073729	4.26738022233076	4.44866959091351	4.27250069088575	0.62730654583152	0.131631595803228	0.403958151145899
Merged-chr17-8233946-3	chr17	8233851	8234051	+	664.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2092.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	3.9860542487499	3.73913156265952	3.80415254721719	3.64081206658653	3.4942502119393	3.76608454168716	3.63348944359755	3.75190580366603	-0.39705559478466	0.403036273014168	0.700554795528095
Merged-chr11-68440238-4	chr11	68440125	68440325	+	986.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	8100.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	5.21769594965539	5.73057267691127	5.08708407424971	5.13636395951089	5.0231488674005	5.32931749784866	5.1614115140043	4.97548430418763	-0.357968939824824	0.277604076143178	0.589700641340894
Merged-chr16-44765777-4	chr16	44765692	44765892	+	949.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021325)	promoter-TSS (NM_021325)	56.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	4.65084415461321	4.72657880067554	4.49005745219981	4.77125108559906	4.60718976084784	4.5764592865108	4.28727244674365	4.61010024142628	-0.314997798425444	0.382419033173354	0.684492276567159
Merged-chr17-47757289-4	chr17	47757192	47757392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	19361.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	7.18562793745445	7.28806846180109	7.2722398302818	7.15063490667065	7.57243303306478	6.9803548509947	6.65857003416771	6.82698575805099	-0.204327252217433	0.404599446684086	0.701678337731807
Merged-chr3-105789989-4	chr3	105789880	105790080	+	965.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145541, intron 1 of 7)	MTD|LTR|ERVL-MaLR	11401.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	4.78012375446183	5.24538603833828	4.98445713711376	5.22747986405447	4.99218201928214	5.30321625169699	5.68242484530111	5.54984163026918	0.575014730704766	0.0881857236433552	0.323966948145952
Merged-chr9-7567531-4	chr9	7567434	7567634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008611, exon 10 of 10)	exon (NM_008611, exon 10 of 10)	-3862.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	8.15686840092358	8.04057033967097	8.22879359008534	8.11075117584746	7.99503044251016	7.97277875543031	8.19573753419683	8.09705913798058	-0.0856241191315691	0.588324932775736	0.819675135431917
Merged-chr10-120151806-4	chr10	120151697	120151897	+	848.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 8 of 11)	intron (NM_001359184, intron 8 of 11)	-38832.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	3.91833809041119	3.84406824458887	3.71708588093771	4.08391159019148	4.00691737457273	3.59339678321363	3.9020448430652	3.54040116114961	-0.346769628983395	0.474165812676245	0.751607118426792
Merged-chr2-73037885-4	chr2	73037782	73037982	+	982.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57436.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	4.680796165821	4.71453621721263	5.03250117946155	5.0418603426298	4.64340919806308	4.32924661236434	4.73745314991816	5.08871408617659	-0.324480048126687	0.385965025651883	0.687313416248664
Merged-chr11-80290329-1	chr11	80290229	80290429	+	547.0	f1_balb.idr	Intergenic	Intergenic	-10583.0	NM_139228	246104.0	Mm.194148	NM_139228	ENSMUSG00000017692	Rhbdl3	AI847581|Rhbdl4|Rhomr1|Vrho	rhomboid like 3	protein-coding	3.66181491021274	3.78056397969489	3.81405956432106	3.26676475213368	3.55202600489272	3.72626950034323	3.79726744054972	3.76318311781397	0.226568863990092	0.653380810817063	0.854997557892684
Merged-chr13-43481295-7	chr13	43481177	43481377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019930)	promoter-TSS (NM_019930)	-304.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	5.33120443088125	5.35125053993172	5.11077105255355	5.08213225945999	5.17621430763069	5.64067414879521	5.21603215835703	5.14133488772377	0.156609711989506	0.610652218845004	0.831845944368992
Merged-chr19-6293486-4	chr19	6293382	6293582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	-12975.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	7.70965581549322	8.25562771056694	8.09258288035847	7.75094831972127	7.83583538740624	8.01648600357717	8.04157274619557	7.65415126192411	-0.096989408335773	0.627932399667284	0.841376459393803
Merged-chr11-98918407-4	chr11	98918308	98918508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025779, intron 9 of 11)	intron (NM_001025779, intron 9 of 11)	10257.0	NM_011799	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	7.01772589045333	6.87005559002779	6.85498294696398	6.95183076614281	6.55319541188612	6.81176430044148	6.95972699293267	6.49440707702587	-0.301639708328531	0.152067793163916	0.435908076582271
Merged-chr10-120208771-4	chr10	120208664	120208864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026617)	promoter-TSS (NM_026617)	-62.0	NM_026617	68212.0	Mm.157426	NM_026617	ENSMUSG00000020225	Tmbim4	0610007H07Rik|AU022431	transmembrane BAX inhibitor motif containing 4	protein-coding	7.11792529802924	7.26394538973475	7.0187941627068	7.01329025677669	7.4439655818051	7.58535603182663	7.55755433886873	7.31425386860426	0.504565983382465	0.0061459669209099	0.0552423007277997
Merged-chr9-71952736-4	chr9	71952633	71952833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011544, intron 5 of 20)	MIRc|SINE|MIR	-56637.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	5.91383413854135	5.88794343795545	5.54509786817676	6.12300703928351	5.9432178813279	5.8680542871409	5.73993883198916	6.58492370503452	0.286482489865562	0.342383815019526	0.651392231825163
Merged-chr8-25044298-4	chr8	25044190	25044390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 10 of 11)	intron (NM_031257, intron 10 of 11)	-5328.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	4.97175457990325	5.34956669144107	5.37676798712081	5.58377448329651	5.42902421573592	5.29877938663101	5.2913440184196	5.50956979150175	0.0515901642995069	0.865395367578089	0.949618858397941
Merged-chr6-16892094-4	chr6	16892013	16892213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 1 of 6)	intron (NM_031198, intron 1 of 6)	6328.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	6.97618668008603	7.08084332076094	6.8759687957385	7.05026085856432	6.69339140782766	6.83742684507444	6.51203473397332	6.33643907209461	-0.555001548097592	0.00858621849192807	0.0706704956101929
Merged-chr12-79156995-4	chr12	79156882	79157082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009705)	TTS (NM_009705)	15476.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	7.03210889595251	6.93696972933052	6.99934406179922	7.18782589802738	5.94871905743914	6.02435013199091	6.33833723194718	6.26830973729517	-1.31261497626678	2.55105785016035e-09	1.5246158414489e-07
Merged-chr11-20561451-3	chr11	20561341	20561541	+	855.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021372, intron 1 of 1)	intron (NM_021372, intron 1 of 1)	18188.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	3.87449579417643	3.79516654805527	3.56885535835017	3.86760215599252	3.4751050356821	3.84995662100755	3.55555197647842	3.56699546584387	-0.539859823853089	0.263938714694643	0.576002384512201
Merged-chr10-67025683-4	chr10	67025560	67025760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110511, intron 2 of 6)	MTD|LTR|ERVL-MaLR	20585.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	7.0552911074476	7.0941227536936	7.13770308146651	7.00990015563834	6.90834727771288	7.09390712531885	6.98461242644154	6.89886233724601	-0.139833913594671	0.453126668915254	0.737264341937022
Merged-chr8-83989444-4	chr8	83989350	83989550	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008854, intron 5 of 9)	intron (NM_008854, intron 5 of 9)	-8222.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	5.38211131243612	4.94663255359178	5.08502130390789	5.19562302262972	5.22743455959496	5.15550350772937	4.99193009647781	5.08157309994885	-0.0747793506706309	0.808198469550815	0.925984046103139
Merged-chr19-23116432-4	chr19	23116326	23116526	+	713.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24800.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	4.03354826680022	3.74123158985751	3.88532482858653	4.25944065011822	3.81383792582763	4.05891094251119	4.06216528890296	4.12195425209098	0.00939015879232401	0.983448919981619	0.994020486145972
Merged-chr4-106828080-3	chr4	106827953	106828153	+	757.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-23046.0	NM_001347159	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	3.48123186845535	3.05643080687748	3.21910991673796	3.32924861685208	3.05297927931702	3.07125875713638	3.08659594791212	3.43135645279705	-0.426454957304552	0.459053334987594	0.74170765693035
Merged-chr11-57517208-4	chr11	57517065	57517265	+	818.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026342, intron 1 of 13)	MTE2a|LTR|ERVL-MaLR	1479.0	NM_001168667	67726.0	Mm.25632	NM_026342	ENSMUSG00000020523	Fam114a2	1810073G14Rik|9030624B09Rik	family with sequence similarity 114, member A2	protein-coding	3.16426957481619	3.23617929363779	3.29078950679279	3.52506008507918	3.55734690446014	3.34023183865044	3.54592147647768	3.45783436817685	0.526910090894172	0.324618777073029	0.636161998108012
Merged-chr19-53783808-3	chr19	53783695	53783895	+	777.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 1 of 13)	Lx9|LINE|L1	106489.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	3.57002530987027	3.70786264401146	3.63308250085606	3.76683175971955	3.76886119467618	3.92795374226353	4.2346194711546	4.42835141155519	1.18985925569348	0.012288751697158	0.0914194248591148
Merged-chr4-63372127-4	chr4	63372013	63372213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 18 of 21)	intron (NM_001045514, intron 18 of 21)	9664.0	NM_011016	18406.0	Mm.14173	NM_011016	ENSMUSG00000061540	Orm2	Agp1|Orm-2	orosomucoid 2	protein-coding	5.36705921672469	5.82331978486219	5.48600892053903	5.82682335462851	5.31688474857501	5.23649769124404	5.486206280812	5.68939682157043	-0.370193538320588	0.210367709004256	0.514845384376768
Merged-chr11-87025538-4	chr11	87025442	87025642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31780.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	6.56110672703429	6.72453168956101	5.91941001688097	5.64555903436826	6.33880120036828	6.62915413229491	5.83925565060151	6.07669997883002	-0.044348554729838	0.89370578339493	0.960342451030612
Merged-chr5-41337173-2	chr5	41337075	41337275	+	738.5	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	370516.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	2.5863953437996	2.53072173528782	2.58660153148339	2.5838311076767	3.60796216739363	3.13868068309593	3.12772479350393	3.48694640328599	3.64038766457297	9.12096524486309e-06	0.000253800306944531
Merged-chr11-94031450-4	chr11	94031353	94031553	+	969.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027569, intron 2 of 28)	intron (NM_027569, intron 2 of 28)	-12752.0	NM_001025430	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	4.55499624132769	4.93593915518114	4.28556248598251	4.60989477169575	4.71908253754239	4.36329403007996	4.16475126437904	4.84174909426415	-0.140070245846325	0.733852267325117	0.894677831870624
Merged-chr5-102046178-4	chr5	102046073	102046273	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	23748.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.38482857477846	5.19121424067258	5.62764777413456	5.43665580328367	5.46308340921442	5.0698758382116	5.41635591135297	5.88672374246458	0.1332125954192	0.670667153638378	0.864213664580603
Merged-chr1-51478465-4	chr1	51478374	51478574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310549)	promoter-TSS (NM_001310549)	-75.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	8.8985622506501	9.09592956844733	8.98891293139468	9.03900857171209	9.05663763123657	9.17409646737283	9.10958744196271	8.86325843256087	0.0573019651367443	0.697842003322965	0.878035052717631
Merged-chr15-83510896-4	chr15	83510769	83510969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178869)	promoter-TSS (NM_178869)	38.0	NM_178869	319953.0	Mm.235007	NM_178869	ENSMUSG00000022442	Ttll1	6330444E16Rik|AV014541	tubulin tyrosine ligase-like 1	protein-coding	7.39839453773041	7.1978474402999	6.96030177646033	7.09664852249854	7.36408783451612	7.22861234142144	7.32445122077906	7.19965597131048	0.156604304763311	0.411317608060712	0.706734322023691
Merged-chr10-40128688-4	chr10	40128591	40128791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	13563.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	8.1114778058831	8.40458661608164	8.18113846063652	8.24198862638828	8.20840816416581	8.17672699331149	8.24104630327994	8.04874828355596	-0.089258925009109	0.575701146818004	0.813185666420437
Merged-chr5-62761453-4	chr5	62761343	62761543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	4734.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	5.41012678486433	5.55678511504045	5.72276576485522	5.5369806971615	5.36157715047791	5.39844444875105	5.41307341152372	5.51986699396992	-0.239609494302406	0.378416510908705	0.681010033120215
Merged-chr1-62722500-6	chr1	62722425	62722625	+	904.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	19208.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	3.58059043721229	3.59095457596574	3.63494265458573	3.60154095045234	3.81578369738232	3.75198057633629	3.67144910677536	3.40306890818538	0.22938379588387	0.63184164650529	0.843565602967326
Merged-chr11-83271681-4	chr11	83271592	83271792	+	973.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15034.0	NM_001166028	237890.0	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding	5.0710671570206	5.70231835757732	4.77379980538098	4.4521801680461	5.15905227759782	5.17947814820115	5.17243388468328	4.81182009050795	0.00654305236699077	0.987262408957573	0.995258250959001
Merged-chr16-17760865-3	chr16	17760769	17760969	+	848.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145479, intron 1 of 6)	intron (NM_145479, intron 1 of 6)	1248.0	NM_001359068	224023.0	Mm.282807	NM_145479	ENSMUSG00000022750	Klhl22	2610318I18Rik|Kelchl	kelch-like 22	protein-coding	2.74333176040512	2.79200375959113	2.66710979846012	2.47230550859422	3.20425461594838	3.30205418873546	3.32084712903668	3.07159464617005	2.61985018796226	3.20126447747118e-05	0.000766698533788429
Merged-chr8-46109750-1	chr8	46109650	46109850	+	544.0	f1_balb.idr	intron (NM_207213, intron 2 of 17)	intron (NM_207213, intron 2 of 17)	14396.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	2.90667842452081	2.74299656968855	3.30419514936172	2.62352374516498	2.45165837692504	2.52821490092683	2.49531583069471	2.84587290337559	-1.63048068706259	0.0309835850578096	0.170972990218609
Merged-chr4-97746122-3	chr4	97746004	97746204	+	840.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	CpG	-31522.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	3.19900869012453	3.33306633170127	3.19939449217994	3.31991651175878	3.51906091401017	3.30976400971841	3.18823650002599	3.07191309695879	0.0864706368685935	0.875599371265292	0.9532510799291
Merged-chr2-72262998-4	chr2	72262875	72263075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-22662.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	6.39198080306264	6.95049361019297	6.87166738343534	6.97717307828008	7.17056237994857	7.00692057064569	7.18144294320247	7.13745069365083	0.411357898267531	0.0540595307886888	0.242754611192233
Merged-chr15-73487764-3	chr15	73487665	73487865	+	862.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24795.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	3.47458252639559	3.77628308356906	3.68639109612008	3.64359281138424	3.62316729487878	3.18683546766602	3.51762373904845	3.58307023981058	-0.503310639516688	0.330221692478324	0.641648008542111
Merged-chr12-46710224-3	chr12	46710135	46710335	+	948.788879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021361, intron 4 of 4)	L2a|LINE|L2	108540.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	3.80949942003549	4.39985428226812	4.26344432534081	4.49686680129588	3.31338303223322	3.62806876079448	3.49545996166129	3.69485959906585	-2.27201862100978	1.44506219968362e-05	0.000383655659497503
Merged-chr12-40140933-3	chr12	40140828	40141028	+	871.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6700.0	NM_001146196	20259.0	Mm.2416	NM_009132	ENSMUSG00000002565	Scin	AW545522|adseverin	scinderin	protein-coding	3.52937916218139	3.65172627979825	3.58828456027997	4.16971544539413	3.85046012551075	3.45059383382484	3.82996230015183	3.69586057992065	-0.178323754255842	0.736349205713692	0.895957197789619
Merged-chr13-44768022-2	chr13	44767922	44768122	+	964.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	B4A|SINE|B4	36751.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	3.22993802460256	3.0696891539861	3.17145478180927	3.53289878769805	3.62497191237841	3.0121012688617	3.03580954495043	3.16990573395473	-0.0887459065507075	0.887244789258829	0.957722765118124
Merged-chr15-61986650-3	chr15	61986503	61986703	+	894.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177353, intron 1 of 2)	CpG	1262.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	3.99987689571552	4.21267775474357	4.51551925522284	4.40162656578453	4.02587967386567	3.89298246515055	3.81777418404797	4.54710249159444	-0.488087746030015	0.290064238019694	0.602184458822498
Merged-chr5-23787632-4	chr5	23787533	23787733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177323)	promoter-TSS (NM_177323)	-78.0	NM_177323	72772.0	Mm.133300	NM_177323	ENSMUSG00000028999	Rint1	1500019C06Rik|2810450M21Rik|Rint-1	RAD50 interactor 1	protein-coding	6.86225351712818	6.90328506118823	6.94504888644716	7.14590998673567	7.29533552216729	7.32758009486825	7.14925788261727	6.95328961000971	0.291492291768031	0.145160018695004	0.424570388342032
Merged-chr17-28621893-4	chr17	28621790	28621990	+	804.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016795, intron 2 of 15)	CpG	631.0	NM_016795	20815.0	Mm.15252	NM_016795	ENSMUSG00000004865	Srpk1	AU017960	serine/arginine-rich protein specific kinase 1	protein-coding	3.65842602310395	3.84976859396564	3.65893597319825	3.35180917928414	3.74328353985662	3.66488101397122	3.79271545375274	3.60265161803317	0.229368131207517	0.639206510024887	0.847516581794602
Merged-chr4-88707314-4	chr4	88707218	88707418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15190.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	6.71664374477461	6.8387449684269	6.61236859383053	6.89846649079811	6.66443995322848	6.32155140358666	6.57863477104993	6.50969421647289	-0.356304701958629	0.0945374204750129	0.336403492075736
Merged-chr8-41006473-3	chr8	41006386	41006586	+	922.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 7 of 13)	intron (NM_001005863, intron 7 of 13)	-10982.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	3.94692495842923	4.00743055506748	3.75181674575543	4.16369403072843	3.60421136795155	3.572768997441	3.44583334872912	3.89898525978001	-1.02936032411603	0.0346667907791851	0.184333086350499
Merged-chr5-110841209-3	chr5	110841105	110841305	+	826.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016681, intron 1 of 14)	intron (NM_016681, intron 1 of 14)	1188.0	NM_016681	50883.0	Mm.279308	NM_016681	ENSMUSG00000029521	Chek2	CHK2|Cds1|HUCDS1|Rad53	checkpoint kinase 2	protein-coding	3.28985933917497	3.29932053269617	3.17999411643788	3.52368213930492	3.08744220069752	2.96061939619541	2.98541996722389	2.99319449796664	-1.32580074011627	0.0249916940142958	0.148425395703022
Merged-chr1-172047152-4	chr1	172047128	172047328	+	806.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10368.0	NM_010916	18071.0	Mm.2474	NM_010916	ENSMUSG00000051251	Nhlh1	Hen1|Nscl|Tal2|bHLHa35	nescient helix loop helix 1	protein-coding	3.70069887329669	3.27191952103849	3.70125842908888	3.59585890048084	3.66808636675136	3.43317164667583	3.42818923752916	3.31860038806439	-0.330047602779487	0.529301494532986	0.785586368892852
Merged-chr11-101316177-4	chr11	101316095	101316295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011192)	promoter-TSS (NM_011192)	-18.0	NM_011192	19192.0	Mm.288477	NM_011192	ENSMUSG00000078652	Psme3	AA410043|AU020960|Ki|PA28gamma|REGgamma|pa28g	proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)	protein-coding	5.78153100054445	5.44377432203586	4.80872764588031	5.21980716475248	5.7549543960164	5.66164713593998	5.2495077450466	5.82152533486678	0.493238681096349	0.143682282279748	0.422069298435482
Merged-chr11-32620167-4	chr11	32620067	32620267	+	936.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 18 of 18)	intron (NM_009288, intron 18 of 18)	-22388.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	4.41487062285115	4.29467411081296	3.94121739769041	4.33679204314198	4.01609248842565	3.94506295322117	4.50742562198166	4.5965240267553	0.0804656614398901	0.855886551109475	0.945789651489937
Merged-chr3-108537483-4	chr3	108537387	108537587	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029314)	promoter-TSS (NM_029314)	-97.0	NM_029314	75504.0	Mm.271255	NM_029314	ENSMUSG00000027886	1700013F07Rik	-	RIKEN cDNA 1700013F07 gene	protein-coding	4.7615622448921	4.92845387028466	4.96135044102582	4.99451012443931	4.95798116485828	5.24294482379761	5.78395491937958	5.16220265644312	0.748803749977204	0.0292935069442556	0.164620442980039
Merged-chr6-113226920-3	chr6	113226821	113227021	+	784.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-10922.0	NM_001362183	97287.0	Mm.197816	NM_026849	ENSMUSG00000030269	Mtmr14	1110061O04Rik|AW553738|C76151	myotubularin related protein 14	protein-coding	3.26016238691139	3.25579722731161	3.13128177885085	3.02077192096259	3.60924632816617	3.43563874519179	3.47171999444059	3.63079245174335	1.36785073123256	0.00806555391005459	0.0675970455012211
Merged-chr9-31931887-4	chr9	31931778	31931978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18593.0	NM_013800	12023.0	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	6.26829776150433	6.46255424024685	6.26940815422012	6.71673662937983	5.99503999434302	6.08229462248537	5.96905879027475	6.12693291444601	-0.638130915531717	0.00814450940654931	0.0680021155482432
Merged-chr8-6119655-3	chr8	6119572	6119772	+	972.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1014385.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	3.70615719411613	3.75914577265825	3.84400352012057	3.60595017634164	4.90291125875676	4.6898341458715	5.13638760197973	5.03311923803403	2.94220334544585	2.76334332405473e-13	3.29467360909366e-11
Merged-chr10-19583222-4	chr10	19583116	19583316	+	907.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8733.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	4.66567950231643	4.82590597142283	4.92779049328288	5.05356876466949	4.98341651649642	4.62130512122451	4.93696733122616	4.62140129081527	-0.155815200993743	0.653551206558925	0.855088323999316
Merged-chr4-155122065-3	chr4	155121970	155122170	+	934.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356327, intron 10 of 12)	intron (NM_001356327, intron 10 of 12)	35466.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	3.29179932869535	3.29185772913427	3.29228894332039	3.62384219390386	2.72252955500789	2.73902144315758	2.85769450966187	2.93447716619167	-2.75156569271641	9.52936441208138e-05	0.00195135393983757
Merged-chr11-114893968-5	chr11	114893886	114894086	+	950.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347654, intron 2 of 6)	intron (NM_001347654, intron 2 of 6)	3945.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	3.8544636450248	3.48772695290962	3.63073594802848	3.51608346079745	3.48932099818844	3.12431797226852	3.28439881167436	3.47200525304389	-0.908083044039245	0.0943991558819995	0.33612994079664
Merged-chr14-65262451-4	chr14	65262350	65262550	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021458)	promoter-TSS (NM_021458)	13.0	NM_021458	14365.0	Mm.214687	NM_021458	ENSMUSG00000007989	Fzd3	AU020229|D930050A07Rik|Fz3	frizzled class receptor 3	protein-coding	4.66335061047637	4.87900545596289	4.85654819993119	4.7427307479849	4.96655176063542	4.66599816329974	4.72242393019446	5.11051065213972	0.201381799017237	0.549608316153374	0.798066561323089
Merged-chr14-76402756-4	chr14	76402657	76402857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12204.0	NM_001310646	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	5.59741299716161	5.56194695528195	5.57178487909403	5.92333246433327	5.54027911226668	5.37969869315701	5.59608451831356	5.62047547832274	-0.259699610682214	0.347698515818536	0.655546119710951
Merged-chr10-7924433-4	chr10	7924320	7924520	+	812.983337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359534, intron 2 of 6)	intron (NM_001359534, intron 2 of 6)	28645.0	NM_001359534	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	4.77300830712593	4.49641291579299	4.4131788662777	4.61721933979813	4.61865450489312	4.8725852215557	4.52427512809938	4.58314923648841	0.150762564814967	0.672590955587907	0.865267714888623
Merged-chr9-35183545-4	chr9	35183474	35183674	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177847)	TTS (NM_001177847)	-7587.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	5.40359868358108	5.55439727548378	5.40453351995297	5.79612948582907	5.23032955292926	4.89520677131951	5.25985296045796	5.25089802357223	-0.706406976926932	0.019626971141605	0.126347850130081
Merged-chr11-118404658-4	chr11	118404568	118404768	+	868.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2709.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	4.1878103939266	5.0325599768098	3.87940689576466	3.91431482716782	5.08924899041967	5.01050367009918	4.59242819619788	5.02331675986812	1.24741997095796	0.00978935130545366	0.0777067287354618
Merged-chr12-84784704-4	chr12	84784594	84784794	+	930.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 34 of 34)	intron (NM_013589, intron 34 of 34)	11424.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	4.39001392667075	4.49746012585695	4.3451333591041	4.40726494194205	4.87253598354476	4.32543977823089	4.45687509321609	4.66778611975926	0.446871509188716	0.233960743121923	0.543650161095435
Merged-chr2-118295629-3	chr2	118295494	118295694	+	744.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201367, intron 1 of 2)	intron (NM_201367, intron 1 of 2)	-9320.0	NR_045919	73358.0	Mm.437192	NR_045919	ENSMUSG00000085889	1700054M17Rik	-	RIKEN cDNA 1700054M17 gene	ncRNA	2.69688598648428	2.56006276069456	2.84749743896728	2.61055706554194	3.12173471945308	3.16234060856697	3.49131596939022	3.41767375609363	2.74000655548939	1.84582497995899e-05	0.000474481676592637
Merged-chr11-58307737-4	chr11	58307600	58307800	+	953.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_182996, exon 2 of 12)	exon (NM_182996, exon 2 of 12)	631.0	NM_001040686	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	4.64504748826293	4.25070248043555	5.0761802705144	4.55693487081123	4.81538308737592	4.60967922168515	4.36526365825953	4.85960932161956	0.048337949541218	0.903603106428765	0.964287824952031
Merged-chr17-78733622-3	chr17	78733524	78733724	+	667.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011500, intron 1 of 17)	intron (NM_011500, intron 1 of 17)	2936.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	3.30709437925877	3.54152842357767	3.73652523924004	3.53620277741474	3.28043542820075	3.42078371457394	3.62642630894199	3.53783694481634	-0.234797873211456	0.648484481213657	0.852229919284865
Merged-chr12-77058806-3	chr12	77058723	77058923	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96575.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	4.46098788359346	3.76957476567319	4.2178397592153	5.05929609067361	3.75978528875562	3.65465807272533	4.10665986093344	4.07355417720161	-1.4100952288954	0.00835411021221624	0.0692162973804377
Merged-chr4-34778390-4	chr4	34778310	34778510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330756)	promoter-TSS (NM_001330756)	-44.0	NM_025471	66291.0	Mm.28071	NM_025471	ENSMUSG00000028295	Smim8	1810030N24Rik|2810406B13Rik	small integral membrane protein 8	protein-coding	8.22547380069502	8.36117157055186	8.29084302967736	8.58652019579607	8.37359462993905	8.31791003991782	8.30734063259391	8.36772141451238	-0.0506153075432075	0.753329644345626	0.902798885097597
Merged-chr18-53921169-4	chr18	53921076	53921276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 6 of 12)	intron (NM_152809, intron 6 of 12)	59063.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	5.87671148194884	5.75303865633395	5.85294311885946	6.27716402902625	6.38457471371707	6.19337177820534	6.45546059198495	6.01290514715062	0.459334142103447	0.083247133785926	0.313582119800404
Merged-chr17-27909785-3	chr17	27909668	27909868	+	872.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr	promoter-TSS (NM_026836)	promoter-TSS (NM_026836)	462.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	3.94973680711779	4.66057182546109	4.48506018932971	4.26281351501293	4.23179933774317	4.34905560096989	4.10155733137997	4.91538322326483	0.167905332384678	0.710722349853533	0.884203816607274
Merged-chr2-102990902-4	chr2	102990805	102991005	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82608.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	4.95816809867826	4.83730664778218	5.03002825687111	5.49726325269758	5.29073410099516	5.02173833115942	5.10455631102978	4.99165175661401	-0.0318402655640605	0.926401601760792	0.97297319854411
Merged-chr6-91441405-4	chr6	91441298	91441498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045980)	promoter-TSS (NR_045980)	411.0	NR_038153	69798.0	Mm.229265	NR_038153	ENSMUSG00000100680	1810044D09Rik	-	RIKEN cDNA 1810044D09 gene	ncRNA	5.34096822804701	5.30820084556615	5.31054786773979	5.63689035112401	5.66904296347232	5.28430588269486	5.3754540147696	5.84132732030021	0.249170141307488	0.406327268400644	0.702851363948501
Merged-chr19-56749635-4	chr19	56749525	56749725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27253.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	6.22971027178817	6.26486162126289	6.23081257157668	6.50950589569327	6.16511307505479	5.87667342814277	6.27216141549542	5.90432057938861	-0.389517347309786	0.109003600347561	0.364500952228652
Merged-chr16-76363207-4	chr16	76363132	76363332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	9817.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	5.9149211871675	6.38722182495301	6.23794669003792	6.36313960536007	5.88064677774544	5.56671305169438	5.76631801973792	5.51148571377013	-0.868129835388751	0.0010129122440069	0.0135827505555763
Merged-chr12-32230259-4	chr12	32230163	32230363	+	746.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21614.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	4.78282136098658	4.71018090694816	4.9105055787188	4.20938976903816	4.37448448795751	4.03659462073815	4.54377775487084	4.48036085780254	-0.661304643905425	0.116369225838393	0.377462865746944
Merged-chr3-145105120-3	chr3	145105021	145105221	+	947.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6015.0	NM_178697	229933.0	Mm.331420	NM_178697	ENSMUSG00000036960	Clca2	4732440A06|AI586120|Clca5	chloride channel accessory 2	protein-coding	4.03796819825482	4.31470203299155	4.25048614625274	3.466875193361	4.1204890348265	3.78905289499754	3.52807496473197	3.94050385916232	-0.511241817496255	0.335317018715209	0.645696625774534
Merged-chr4-44981448-4	chr4	44981353	44981553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001312880)	promoter-TSS (NM_001312880)	59.0	NM_001312880	76238.0	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	7.36321008487195	7.26800783407812	7.50068381938884	7.208854962817	6.90405964863401	7.11086212087426	6.81458297853798	6.84447461732659	-0.563978484214647	0.00358803355333425	0.0367788940513794
Merged-chr16-30968626-4	chr16	30968550	30968750	+	976.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	112782.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	7.19301393340795	7.54328678548856	7.21344526457641	7.22398941859132	5.58524629647986	5.38166537751207	5.78651846965361	5.30623893018903	-2.65974503314493	1.06045389486324e-25	7.25788920985296e-23
Merged-chr11-50208270-3	chr11	50208161	50208361	+	822.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290769, intron 1 of 7)	intron (NM_001290769, intron 1 of 7)	2559.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	3.80447622433421	3.60710408531473	3.80506602242858	3.40423579695603	3.53315299086291	3.61276716727831	3.42473068375579	3.55134264510137	-0.391455401434895	0.435785993446528	0.724840193193682
Merged-chr13-42051684-4	chr13	42051544	42051744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007772)	promoter-TSS (NM_007772)	-377.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	8.12406572451749	8.29317358228244	8.0543954294407	7.53750640880703	8.48079673442565	8.35839921741826	8.23422288220875	8.08179154348213	0.352369974847323	0.091244184300548	0.330096835052863
Merged-chr15-58344096-4	chr15	58344030	58344230	+	910.179199	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027211, intron 8 of 8)	intron (NM_027211, intron 8 of 8)	-19961.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	4.89319525934002	4.41961350083939	5.31855432996896	4.84108743537864	4.56317147581957	5.06835767587051	5.0374347692681	5.02713253937282	0.064292645517097	0.866190526417062	0.949861736890724
Merged-chr1-64633268-3	chr1	64633204	64633404	+	907.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16136.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	3.67220250825862	3.34658066602917	3.62346140671716	3.83717767686824	3.31564546014576	3.32324649814097	3.5578462168506	3.67057650311214	-0.560036402247777	0.288970032486578	0.600929003808641
Merged-chr13-101907903-4	chr13	101907783	101907983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139666.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	7.18004739939828	7.40799884497248	7.70984047725223	6.91162699550728	7.17701168222952	7.17934619013205	7.06486921601721	6.46032726091004	-0.44182089576804	0.0868952667098921	0.321509972577922
Merged-chr8-60954801-4	chr8	60954711	60954911	+	982.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173876)	promoter-TSS (NM_173876)	-12.0	NM_173876	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	5.13062975664937	5.41185891601674	4.6120662320011	5.46033737422298	5.32268323526758	5.16942953682473	5.52012973718334	4.65715650316332	0.00442726316381718	0.99081161712342	0.996425161706009
Merged-chr7-126896938-2	chr7	126896838	126897038	+	728.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_028389, exon 3 of 6)	exon (NM_028389, exon 3 of 6)	1340.0	NM_026827	68742.0	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	2.5836287310156	2.49231015533045	2.70679302086086	2.1618947336205	2.43527157997268	2.87618105119718	2.29277717291322	2.37458176436383	0.0608198369279925	0.93812972544555	0.977502279650557
Merged-chr3-148322129-4	chr3	148322035	148322235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	632500.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	6.14324708630886	6.59629960955386	6.30993045228575	5.91048057049742	6.14065677757415	5.85314131261166	5.87680945818531	5.58115043037742	-0.574404759682752	0.0426302181551891	0.209788184324406
Merged-chr5-3387387-4	chr5	3387293	3387493	+	938.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	43500.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	5.67575965052756	5.61151295022496	5.49966992453982	5.86547319852687	4.94354161317851	5.5905589141774	4.94563838336784	5.35227391435958	-0.80235933595214	0.0105508148422636	0.0820929057599287
Merged-chr5-150599682-4	chr5	150599587	150599787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001362416)	TTS (NM_001362416)	-5162.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	5.96398381225237	5.662232694429	6.19820846658931	5.55397558634675	5.91955739552928	5.88147319867751	5.82357264203303	5.82568077428103	0.0239895785868659	0.930513765248701	0.974975921814689
Merged-chr2-148520937-4	chr2	148520821	148521021	+	899.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77386.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	4.48328520305499	4.29029476364635	4.03144994738372	4.3543257184318	4.37707734647273	4.26081884250791	4.25874729070553	4.40261208454862	0.0600387618200969	0.877690826333892	0.954269407909636
Merged-chr9-113026261-3	chr9	113026166	113026366	+	875.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	560886.0	NR_040760	102688.0	Mm.394901	NR_040760	ENSMUSG00000109890	AU023762	-	expressed sequence AU023762	ncRNA	3.44673589659727	3.76961614048635	3.56177149036241	3.98900770617103	3.62474602053558	3.62058219117127	3.43502868038604	3.38429087450037	-0.634673370579667	0.222690516166289	0.530822418880823
Merged-chr2-167348081-4	chr2	167347977	167348177	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	1101.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	4.9860291197572	4.70092206716368	4.98686858392494	4.80148337431783	4.95952380543991	4.74022507110778	4.86078405781571	4.98347344652282	0.0583187332282076	0.858081220229224	0.946507493877689
Merged-chr11-69465847-4	chr11	69465702	69465902	+	761.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 39 of 85)	intron (NM_001081330, intron 39 of 85)	-52127.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	3.46363198944658	4.18157876850906	3.638812204656	3.01728860171073	3.82666084213945	3.7597644090885	3.56872288524865	3.63670817323679	0.149905532255868	0.799740166083395	0.922665648246429
Merged-chr10-60274077-4	chr10	60273980	60274180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3548.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	6.14071808517719	5.92629313069481	5.96618117844373	6.31871923080096	6.28640186014804	6.43416505924395	6.29927428722033	6.29145137468957	0.320988941435616	0.175567728756075	0.47032648424841
Merged-chr6-122602404-4	chr6	122602298	122602498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031159)	promoter-TSS (NM_031159)	46.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	7.37939705364959	7.24114085294908	7.19342830157315	7.3305906760674	7.67811447807072	7.90409401291829	7.77881058122006	7.67434640045302	0.619977171535771	0.000336906612365838	0.00558079491775378
Merged-chr10-43910812-3	chr10	43910742	43910942	+	907.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_130892, exon 4 of 9)	exon (NM_130892, exon 4 of 9)	9035.0	NM_130892	170728.0	Mm.390253	NM_130892	ENSMUSG00000019864	Rtn4ip1	D10Ertd690e|NIMP	reticulon 4 interacting protein 1	protein-coding	4.42118306061353	4.0359510689416	4.73647475539407	4.3343847699632	3.99251338235938	4.1822038346575	4.09083230191261	4.33701027154115	-0.608778287767735	0.152836828473428	0.437291867803211
Merged-chr8-39636216-3	chr8	39636122	39636322	+	996.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	6456.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	4.48174369796622	5.04482302785108	4.48248884592228	4.15855731359512	3.84690037408708	4.25301809031299	3.88594990846916	4.2207939735169	-1.27238933585999	0.00596092353575443	0.0539949829920418
Merged-chr11-17005095-4	chr11	17004997	17005197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	RSINE1|SINE|B4	3621.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	8.45755112681954	8.23707010333105	8.29448410349423	8.47206096553612	8.21737520965995	8.30224578455426	8.59475503153504	8.38711869451931	0.0109816874807807	0.947347594208219	0.981132208243319
Merged-chr4-133659658-4	chr4	133659596	133659796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12951.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	6.11616174302716	5.20711989405107	5.91536959426589	5.98576438400018	4.9348367030947	5.35762709023493	5.04079657890296	5.27586744977078	-1.21501253750181	0.000247181328603196	0.00431863519603506
Merged-chr4-108762189-1	chr4	108762089	108762289	+	732.0	f0_balb.idr	intron (NM_001347163, intron 1 of 18)	intron (NM_001347163, intron 1 of 18)	18899.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	3.29022231969732	3.26630804473204	3.44674413271339	3.45627882134088	3.13689218799771	3.15681721582525	2.90020270394341	3.23237532309289	-0.998279940045593	0.080148513444844	0.306764050034444
Merged-chr6-83599100-4	chr6	83598984	83599184	+	944.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26580.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	4.57476422923174	4.55862015155236	4.69444561250823	4.88061205960476	4.66452567429508	4.47854095378769	4.78015210969187	4.69136976783478	-0.0834984598898276	0.813426050089665	0.927857767644014
Merged-chr3-81110922-3	chr3	81110815	81111015	+	638.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	74499.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	3.93857860396992	3.43285041010332	3.44425189190944	3.6971826378384	3.75037432573963	3.29033907279166	3.54598534101863	3.7135715017698	-0.1632110014797	0.756617574587027	0.904386007179465
Merged-chr11-97243153-3	chr11	97243061	97243261	+	864.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008942, intron 5 of 22)	intron (NM_008942, intron 5 of 22)	37415.0	NM_008942	19155.0	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	3.79636835569097	3.72545944577698	3.27984807574715	3.44158111912514	3.78121266005277	3.59172371915572	3.63138131664993	3.92911315154657	0.523271460951744	0.296798062969081	0.608759741926525
Merged-chr18-43393573-1	chr18	43393473	43393673	+	644.0	f0_balb.idr	promoter-TSS (NM_009468)	promoter-TSS (NM_009468)	-196.0	NM_009468	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	3.39233246147372	3.22348962113863	3.39278592482371	3.38258773622501	3.32668766649752	3.44912181429028	3.53284148344016	3.27586145233038	0.165473955491351	0.747536721715046	0.90062485299518
Merged-chr5-125376066-4	chr5	125375975	125376175	+	985.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13942.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	4.2593737393637	4.44249270006444	4.75175304895365	4.70861210928933	4.86828934966453	4.22784022967507	4.54804013995442	4.3063605101556	-0.0773579591228295	0.850385739679534	0.943605803779211
Merged-chr6-26206222-4	chr6	26206103	26206303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	274777.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	7.06190012091685	6.86667246941368	7.01326487138651	7.68209703647825	7.01733765782982	7.24019497404215	7.19799242183737	6.96959467279825	-0.14461398620286	0.551054022394043	0.798799956417849
Merged-chr4-126430480-4	chr4	126430374	126430574	+	960.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153402)	promoter-TSS (NM_153402)	-932.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	4.70511157959486	5.49475097992896	4.86713672879779	4.9349816739479	5.18996340706383	5.18383822530644	4.76661904511223	4.74500843951021	-0.0868707713057853	0.814472227089658	0.928390081704136
Merged-chr2-133554931-3	chr2	133554827	133555027	+	996.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007553, intron 2 of 2)	intron (NM_007553, intron 2 of 2)	2768.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	4.94495571014172	4.73945149617916	4.68972764130974	4.43279018636131	3.99984811612613	4.63121085128515	4.30247823910174	3.94000396941722	-1.08529262055996	0.0112915392872512	0.0860330202234267
Merged-chr5-142960351-3	chr5	142960260	142960460	+	660.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007984)	promoter-TSS (NM_007984)	5.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	3.64099231028331	3.4114007111538	3.64151040889776	3.74208698969605	3.57421031687949	3.53523308496854	3.52264397146185	3.4783806009711	-0.296915727120218	0.544587743197601	0.795354633236109
Merged-chr9-107576923-4	chr9	107576827	107577027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331161)	promoter-TSS (NM_001331161)	0.0	NM_008317	15586.0	Mm.475658	NM_008317	ENSMUSG00000010051	Hyal1	Hya1|Hyal-1	hyaluronoglucosaminidase 1	protein-coding	5.77793038489844	6.19844664603567	5.44116822403785	5.99576151607921	5.92771776798775	5.74227513943519	6.19914225601372	5.50012286250996	-0.0340020943019659	0.910255589059046	0.966671146059764
Merged-chr9-14275127-4	chr9	14275034	14275234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1167.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	7.90333536608822	8.06881522459198	7.69285065111841	8.02387153207616	7.60551497651895	7.40783090476392	7.81692908388687	7.13804959394019	-0.54261407324465	0.00820556378671831	0.0683115584531956
Merged-chr16-20693273-4	chr16	20693155	20693355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001304432)	TTS (NM_001304432)	-1802.0	NM_133778	78408.0	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding	6.38831812542364	6.78476307586501	6.29466839066528	6.48635004054217	6.61831288332411	6.61947234340589	6.64751190510573	6.40300582784497	0.103042677766537	0.645549227934783	0.850934142345746
Merged-chr18-60210767-4	chr18	60210686	60210886	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1291.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	4.72579205388819	4.76483264166866	4.80725781283084	4.65008023005081	5.32594522279911	4.94447870579434	5.28932793046465	5.05205991350335	0.869497947685329	0.00615739869835204	0.0552752531151469
Merged-chr16-33886803-4	chr16	33886698	33886898	+	922.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	57133.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	4.04196113750306	4.25048884977745	4.36389658070311	4.67739076111012	4.29795043398904	3.93735720517689	4.26089228415274	4.09125971705957	-0.516556611738429	0.234568945378058	0.544447848974703
Merged-chr7-46919929-4	chr7	46919839	46920039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348089)	promoter-TSS (NM_001348089)	30.0	NM_001348089	22088.0	Mm.241334	NM_021884	ENSMUSG00000014402	Tsg101	AI255943|CC2	tumor susceptibility gene 101	protein-coding	6.96869917910458	6.90727550029693	6.86359616651279	6.94450739792773	6.89097750760981	7.02661289643318	7.02052072091738	7.21780735501234	0.160401955067381	0.403188330721122	0.700665108825868
Merged-chr5-120907603-4	chr5	120907531	120907731	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145211)	promoter-TSS (NM_145211)	-106.0	NM_145211	246730.0	Mm.14301	NM_145211	ENSMUSG00000052776	Oas1a	L3	2'-5' oligoadenylate synthetase 1A	protein-coding	4.52282622027697	4.54945684279214	4.86213842082808	4.59876179573113	4.7294295434042	4.77976735909327	4.58570299565903	4.56299356609767	0.0737618665004433	0.832702536969701	0.936050879841843
Merged-chr5-151651207-4	chr5	151651123	151651323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027009)	promoter-TSS (NM_027009)	-15.0	NM_027009	69263.0	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	8.02896374115981	8.16270979293933	7.99617965073851	8.15770336447773	8.1239350270585	8.28603905823523	8.28421703878411	7.97697070442623	0.101886690269089	0.533749506639935	0.788963661027618
Merged-chr13-69534109-4	chr13	69534003	69534203	+	928.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001169131)	promoter-TSS (NM_001169131)	-239.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	5.17109368522106	5.27081644209982	5.60108174989675	5.37910025827519	5.14251198720957	4.8073045311232	5.08148048985305	4.96075411178411	-0.657002723147799	0.0355071552488145	0.187025689012385
Merged-chr11-116633133-3	chr11	116633007	116633207	+	839.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6088.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	3.21608485559358	3.48165255637301	3.65112273591351	3.59011078195117	2.74111304768272	2.84876114551889	2.73222360639288	2.81650721696905	-3.65825438569227	6.11840177297375e-06	0.000177755803999387
Merged-chr4-134779529-6	chr4	134779420	134779620	+	964.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11516.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	4.38383246720881	4.01755500042361	4.02961569570155	3.89138883977875	3.76590064224307	3.78267184349629	3.76378816371893	3.72013799554038	-0.925241412746044	0.0441183083173917	0.214237758747689
Merged-chr9-63780726-4	chr9	63780609	63780809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22715.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	7.15506552294158	7.22843234206455	6.92653392726365	7.04680659486782	6.98060502215474	6.82330275393628	6.90464332051531	7.01122105615072	-0.219056266713477	0.254520977605347	0.565927925672817
Merged-chr13-59840947-4	chr13	59840829	59841029	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17782.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	5.40156007107489	5.29426250153394	4.91255786816541	5.12757179460422	5.26870547434591	5.30637093037369	5.32040450877229	5.19339252877625	0.147009648426765	0.623093290523757	0.838884054759699
Merged-chr1-131126645-3	chr1	131126554	131126754	+	938.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11580.0	NM_145508	226419.0	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	4.22486752759263	3.85252880764851	3.86317723614853	4.21805298133224	4.02524329455714	3.81424775173904	3.89843752036527	3.80763394255553	-0.451988466224938	0.314303837856048	0.626354487695056
Merged-chr2-98667155-4	chr2	98667083	98667283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	1199526.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	12.1236988885095	11.4157008834191	12.1595938442579	11.8852170710789	12.1569356949897	12.4268313987512	12.0738284340393	12.7195934793373	0.528198420531247	0.0102007321933334	0.0800435663601782
Merged-chr4-53158100-4	chr4	53157974	53158174	+	919.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	1821.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	4.45636445078921	4.19162682343805	4.21874437932184	3.91765765416375	4.32437693489667	4.0483497811259	3.85448904667589	4.12559893752389	-0.228993862951521	0.603777305775813	0.828350269166784
Merged-chr12-3860857-3	chr12	3860743	3860943	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045884, intron 3 of 3)	intron (NR_045884, intron 3 of 3)	1401.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	4.69668832640926	4.71465282068727	4.9100115797341	5.46580101842449	4.40803556512515	4.06771297187401	4.32678798510373	4.76910156788889	-1.24835072972951	0.00348687400448865	0.0359646724772493
Merged-chr8-84981758-3	chr8	84981685	84981885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3037.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	4.52340324470659	4.18391679064706	3.99240219609074	3.9853194869906	4.28177427905926	4.27356459575853	4.4659752005185	4.28295190929232	0.369436908231697	0.367997136288484	0.672498811587355
Merged-chr9-123259873-4	chr9	123259830	123260030	+	895.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001002267, exon 1 of 1)	exon (NM_001002267, exon 1 of 1)	859.0	NM_001002267	72309.0	Mm.8569	NM_001002267	ENSMUSG00000054871	Tmem158	2310037P21Rik|Ris1	transmembrane protein 158	protein-coding	4.43018351606853	4.31032357954134	4.21717891904437	4.61070051785164	4.08723001742831	4.02602395487229	4.19892655605538	4.38812028961796	-0.573239104512089	0.158112063388456	0.44500824673495
Merged-chr15-36163980-4	chr15	36163942	36164142	+	811.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081253, intron 1 of 4)	intron (NM_001081253, intron 1 of 4)	842.0	NM_001081253	78803.0	Mm.26393	NM_175281	ENSMUSG00000048230	Fbxo43	4930533G20Rik|Emi2	F-box protein 43	protein-coding	3.17345110416992	3.32620579353758	3.40711579425314	3.16046450175027	3.31922048746143	3.46652393804635	3.28339654458004	3.40518350142046	0.377254995242898	0.469771195246468	0.748623217976184
Merged-chr1-135730481-4	chr1	135730392	135730592	+	988.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007791, intron 1 of 5)	intron (NM_007791, intron 1 of 5)	1325.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	4.84892375535685	5.32047552921157	5.20888092115611	5.11149958042035	5.33449773731729	5.14636076407375	5.76783961239384	4.76129049781113	0.315031125754047	0.375732345419406	0.67859868094207
Merged-chr6-28867752-4	chr6	28867650	28867850	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	-36003.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	4.92396006480608	5.42237971716427	5.31347543860116	4.63258257404455	5.19894006120311	5.24253898630809	5.14009636868727	4.92149057268076	0.0644243464190784	0.855920060710534	0.945801681068115
Merged-chr17-24073514-4	chr17	24073404	24073604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027008)	promoter-TSS (NM_027008)	-19.0	NM_027008	69259.0	Mm.28171	NM_027008	ENSMUSG00000016946	Kctd5	2610030N08Rik|mKIAA0176	potassium channel tetramerisation domain containing 5	protein-coding	7.19023799162076	7.50930412712643	7.01234038475763	6.78788802607167	7.33495295450829	7.45416880957848	6.91131455392309	7.18644240263727	0.12533310188772	0.593048696220873	0.822473173336168
Merged-chr3-135438677-2	chr3	135438577	135438777	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030689)	promoter-TSS (NR_030689)	-12.0	NR_030689	319587.0	Mm.358971	NR_030689	ENSMUSG00000097032	4930539J05Rik	8030475D13Rik	RIKEN cDNA 4930539J05 gene	ncRNA	7.36724149096641	7.67831573471619	7.59177461329467	7.22916924756055	7.84446814706102	8.06112053302566	7.82446084477825	7.83555303390701	0.555074488863463	0.00298671004354488	0.0318774980041207
Merged-chr4-125131485-7	chr4	125131420	125131620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3639.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	5.0622201539521	4.67444306458387	5.24294877673317	4.85092390168193	4.6823218662378	5.06574739693041	4.83023524325044	5.2668302607916	0.0145124430694235	0.967270096767382	0.988492656396979
Merged-chr14-31205893-9	chr14	31205723	31205923	+	856.962952	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 1 of 13)	intron (NM_001347583, intron 1 of 13)	1003.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	3.45656310007695	3.33284371441971	3.51165375926992	3.43167784840462	3.32102486156371	3.45462041267436	3.32848235498842	3.83682485066377	0.221476342707094	0.670820421161931	0.864301326054577
Merged-chr1-157101302-4	chr1	157101199	157101399	+	974.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305061, intron 5 of 8)	intron (NM_001305061, intron 5 of 8)	7351.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	4.59507598134568	4.68652445693322	4.73743359818124	4.89097776561613	5.4591451414429	5.33396001706821	5.9721413044933	5.49482545160815	1.54496555806539	3.34283208649781e-06	0.00010367731811975
Merged-chr6-13838014-3	chr6	13837923	13838123	+	864.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001330666, exon 3 of 4)	5' UTR (NM_001330666, exon 3 of 4)	1919.0	NM_001330666	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	3.56096721318371	3.46833430129045	3.20720690979438	3.14539310775026	3.55382006604666	3.62597768932486	3.32407868426774	3.75070093109229	0.754112419990064	0.152766801774197	0.437172362943173
Merged-chr13-119596463-4	chr13	119596348	119596548	+	842.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-27371.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	4.3383310469983	4.29582158719376	4.48059807675902	4.9374541308762	5.06696991633585	4.4692836975116	4.90485850212367	4.72150703929291	0.534042478862856	0.191616121987907	0.490978459689893
Merged-chr14-70950134-4	chr14	70950051	70950251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	60044.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	5.75075568529484	5.80723636301167	5.4914616985318	6.22326612073846	5.4624619372515	5.69613290063564	5.3437401199254	5.08471029366414	-0.759151662009429	0.0153796600114555	0.106749349114969
Merged-chr16-91441656-4	chr16	91441550	91441750	+	905.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-23454.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	4.01143161430629	4.32542889028391	4.06738243796888	4.38487765188086	4.5459055331418	4.44273508603784	4.53767437798768	4.62832471344097	0.732631609336206	0.0614392398819958	0.262291348621159
Merged-chr11-76845718-4	chr11	76845607	76845807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007754, intron 1 of 20)	intron (NM_007754, intron 1 of 20)	1301.0	NM_007754	12874.0	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	6.18717589742571	6.29447515418647	6.07192071495669	5.6345956759005	5.61766577563682	6.14141149824301	5.91327671929671	5.87011363879944	-0.265391261954027	0.350576416290397	0.658165288155673
Merged-chr3-146404595-4	chr3	146404515	146404715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253768)	promoter-TSS (NM_001253768)	-27.0	NM_001253769	99167.0	Mm.200783	NM_138744	ENSMUSG00000036825	Ssx2ip	AU014939|AU042321|Adip	synovial sarcoma, X 2 interacting protein	protein-coding	7.3941353146244	7.35225245585612	7.27026943216428	7.38210145211903	7.55552244493402	7.29686419125928	7.8965182839564	7.24308219792552	0.23483934650833	0.253582781381974	0.564898241173811
Merged-chr11-98031617-3	chr11	98031490	98031690	+	808.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4666.0	NM_009078	19921.0	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	3.45348803578801	3.32697870188508	3.28501715976094	3.44666025457805	3.36346960895753	3.56760554758489	3.21322431696128	3.39823507949792	0.0179523761890214	0.972379968639137	0.990058845736756
Merged-chr9-15357787-4	chr9	15357667	15357867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176976)	promoter-TSS (NM_176976)	21.0	NM_176976	319675.0	Mm.218317	NM_176976	ENSMUSG00000046111	Cep295	5830418K08Rik|5832426L23Rik|Gm1131|Kiaa1731	centrosomal protein 295	protein-coding	8.48213667064025	8.3554701791886	8.27664300175311	8.5506500390013	8.67087862051137	8.79004525490989	8.88974090868675	8.43204560461933	0.353724287147508	0.0362640553832709	0.189379251513268
Merged-chr13-23401812-4	chr13	23401720	23401920	+	924.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	22046.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	4.97061632444297	5.12060537125876	4.90171444344992	5.30958273745447	4.68191751658787	5.14391805087609	4.7275732602951	4.42953388556103	-0.666440623529699	0.062744948164079	0.265439184115214
Merged-chr11-16670478-4	chr11	16670336	16670536	+	896.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81767.0	NM_207655	13649.0	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	3.90972645467618	4.22743569760474	4.21182794212741	4.48220869020254	4.18845931157951	4.19355384597288	4.14823524842188	4.25323539573108	-0.116952338463673	0.779937215631437	0.914266087044516
Merged-chr2-6295242-3	chr2	6295146	6295346	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 4 of 6)	intron (NR_040333, intron 4 of 6)	-27511.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	3.52017825373605	3.49707660410949	3.46148624689851	3.66455787331503	3.58402675289325	3.63690731173924	4.01721017989027	3.62943752787444	0.553905109641568	0.258934061346365	0.57071491771143
Merged-chr3-65315930-4	chr3	65315810	65316010	+	916.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357358, intron 7 of 13)	(TTTTG)n|Simple_repeat|Simple_repeat	-13225.0	NR_126080	102637797.0	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA	5.65209978993581	5.77660068010483	5.78185193276558	5.51419161229065	4.62485786244937	4.8247642426653	4.79788479613692	4.81740859628772	-1.74016539490629	2.75814734209771e-08	1.34099842666102e-06
Merged-chr16-45029664-3	chr16	45029569	45029769	+	859.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64342.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	3.87507135610086	3.8201288320616	4.24725667315123	4.34102554558148	3.57347230577951	4.52940718840765	3.62836016743677	3.87339005295749	-0.354856775512692	0.504685783198006	0.770946634094146
Merged-chr14-17660136-4	chr14	17660039	17660239	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113417)	promoter-TSS (NM_001113417)	-821.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	5.44209828893052	5.19032139924604	5.5715168556149	5.63741903780611	5.24616235032565	5.17184993572811	5.11357820563142	5.13499566942625	-0.559136421770421	0.0598146373916435	0.257939299339621
Merged-chr14-13551339-4	chr14	13551225	13551425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163032, intron 2 of 4)	intron (NM_001163032, intron 2 of 4)	97367.0	NM_001163032	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	6.04865676471686	6.43360028871017	6.19448418421949	6.13420926427567	6.29622058077543	6.08864072755467	6.23820766211293	6.06711698291205	-0.040502622338552	0.86336705172765	0.948591391532472
Merged-chr5-88631082-4	chr5	88630963	88631163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 9 of 13)	intron (NM_001359208, intron 9 of 13)	44517.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	8.95572648645709	8.96656702830265	9.13393555222672	9.02396390009925	8.95942221451032	9.00810598678347	9.12806462827813	8.78780952102285	-0.0561265615125863	0.706597931733044	0.882135125542863
Merged-chr7-127184987-4	chr7	127184882	127185082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11095.0	NM_001285907	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	5.59795330308254	6.33247113561326	5.760777024186	5.31615336160574	6.12161250096092	6.22793966248861	5.54181687123975	6.02903016256028	0.322362032506509	0.327092833333067	0.63867529942819
Merged-chr17-56674241-4	chr17	56674138	56674338	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252467, intron 1 of 13)	URR1B|DNA|hAT-Charlie	1013.0	NM_027933	71810.0	Mm.29608	NM_027933	ENSMUSG00000002372	Ranbp3	2610024N24Rik|AA408221	RAN binding protein 3	protein-coding	4.45919385567594	4.50647322779498	4.6339826420043	4.51633142527941	4.53784359888022	4.84833605779019	4.89996831563569	5.1827185153572	0.737412952395508	0.0401730588573508	0.202326339517963
Merged-chr4-45015801-3	chr4	45015704	45015904	+	897.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2805.0	NM_022811	64424.0	Mm.282932	NM_022811	ENSMUSG00000028318	Polr1e	53kDa|AU042259|D030019D19Rik|Paf53|Praf1	polymerase (RNA) I polypeptide E	protein-coding	3.9183103046676	3.72510615363381	4.02012976089886	4.09186704935463	4.51330802473192	3.87107066419501	4.05030069197479	4.19879434352544	0.618055168768169	0.171704811219739	0.465087374685055
Merged-chr14-52314501-5	chr14	52314272	52314472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_015772, exon 2 of 2)	exon (NM_015772, exon 2 of 2)	1951.0	NM_001244916	50524.0	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	spalt like transcription factor 2	protein-coding	3.82706627569446	3.83574354112356	3.76829356305353	3.84527379189248	4.54092777974771	4.16737962158498	4.11833121902629	4.5585257568961	1.40076322763913	0.000912895453537442	0.0125248622758947
Merged-chr16-89872423-6	chr16	89872311	89872511	+	937.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 6 of 27)	intron (NM_009384, intron 6 of 27)	-54059.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	3.49440668077336	3.54028922813914	4.01320310012688	3.55061599748968	3.97146725240619	3.95128294849918	3.8136227928963	3.77755698999992	0.660656298872318	0.163188757286042	0.452762134276484
Merged-chr10-42504472-4	chr10	42504354	42504554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017472, intron 1 of 3)	intron (NM_017472, intron 1 of 3)	2400.0	NM_017472	54198.0	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	5.69074871401502	5.42547670576048	5.61363907986472	5.98362632732991	5.95906471323231	5.55691105720536	5.55845918904292	5.78477290413718	0.0396598327689302	0.890720940500637	0.959104227034594
Merged-chr18-34080195-4	chr18	34080092	34080292	+	898.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72986.0	NM_013512	13824.0	Mm.3465	NM_013512	ENSMUSG00000024376	Epb41l4a	Epb4.1l4|Epb4.1l4a|NBL4	erythrocyte membrane protein band 4.1 like 4a	protein-coding	4.28791741898444	4.15356008123667	4.0414436355764	4.40089994148323	4.59255069103012	4.62623971468437	4.12860396190264	4.37281393624648	0.490101478855538	0.22698221016504	0.535617515493216
Merged-chr4-138288870-4	chr4	138288767	138288967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010623, intron 8 of 14)	intron (NM_010623, intron 8 of 14)	-15871.0	NM_007838	13200.0	Mm.7236	NM_007838	ENSMUSG00000028757	Ddost	-	dolichyl-di-phosphooligosaccharide-protein glycotransferase	protein-coding	6.15813037304784	6.59323875048338	6.21922774313515	6.12619163148835	6.39734608546912	6.06499116585072	6.46502782688635	6.02563447120854	-0.0371250678776904	0.88321164480601	0.956033847067461
Merged-chr15-79039107-4	chr15	79039007	79039207	+	967.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013847)	TTS (NM_013847)	-2778.0	NM_015738	14429.0	Mm.390805	NM_015738	ENSMUSG00000114755	Galr3	Galnr3	galanin receptor 3	protein-coding	5.34180637936992	5.34985223239581	4.83742048391086	5.18843268174973	4.85367831166161	5.36874514664355	5.31588858618259	5.02543449308419	-0.0912160923990921	0.782103099132951	0.915237231838361
Merged-chr16-17452428-2	chr16	17452328	17452528	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001277231, exon 1 of 2)	5' UTR (NM_001277231, exon 1 of 2)	443.0	NM_007764	12929.0	Mm.21048	NM_007764	ENSMUSG00000006134	Crkl	1110025F07Rik|AA589403|AI325100|Crkol	v-crk avian sarcoma virus CT10 oncogene homolog-like	protein-coding	3.9059078269801	3.83794378047732	4.04489333580736	3.70932664098385	3.94970972671818	3.92520307465954	3.84086798895998	3.8029853048982	0.046225917393124	0.916756084746682	0.9691923324053
Merged-chr11-54984310-2	chr11	54984210	54984410	+	869.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 22 of 24)	Kanga1a|DNA|TcMar-Tc2	-21370.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	3.2814481957348	2.95172143349841	3.04584671253771	3.15325156859682	3.00529580139214	3.50105393810477	3.15724528782316	3.10742220755192	0.332160220570443	0.566614819877166	0.807951645949796
Merged-chr10-41584697-4	chr10	41584589	41584789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 33 of 47)	MLT1L|LTR|ERVL-MaLR	16673.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	5.80804111660035	5.79655666529773	5.90073032138639	5.8661584445271	5.73800088253071	5.6338702043899	5.57489831448672	6.09983038469603	-0.107928427780972	0.680531430825428	0.868928920613391
Merged-chr7-114254489-8	chr7	114254411	114254611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033370, intron 1 of 21)	CpG	169.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	5.84562225816839	5.78734494614129	6.19512400200406	6.01919070444965	6.18677535919959	5.92126401448863	6.18211997523074	6.53702149048805	0.39283003012746	0.126512181737945	0.3953901463853
Merged-chr1-162550026-4	chr1	162549939	162550139	+	920.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1694.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	4.49746123949387	4.37269225454614	3.7709163832409	4.03590851641953	4.63255077396456	4.74634992518876	4.66059698520632	4.41284548823003	0.983644691347203	0.0178326837408033	0.118483393632656
Merged-chr5-99254024-4	chr5	99253905	99254105	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1078.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.68844300329313	4.30703340624043	4.5367997420827	4.49882541015605	4.68397477106913	4.34448830727459	4.43313112759559	4.72141631494794	0.11659212449184	0.753299192301083	0.902798885097597
Merged-chr2-166031229-4	chr2	166031128	166031328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	38591.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	5.74703037887142	5.76928447419423	5.27017578309631	5.70274088998081	5.70875117712507	5.72005991384742	5.48982688976129	5.39600476214665	-0.0912736503466372	0.746532885769387	0.900192520221911
Merged-chr1-36068784-2	chr1	36068684	36068884	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_015818, exon 1 of 2)	exon (NM_015818, exon 1 of 2)	384.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	3.90993975387259	3.8418467368648	4.09173426846637	3.78768282060309	4.06549266728301	3.92930495817605	3.68545744735089	3.75337402137763	-0.0817476885138378	0.857012703905971	0.946159157665131
Merged-chr17-26467790-3	chr17	26467685	26467885	+	901.255554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40687.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	3.5634585120198	3.77679425034434	3.70922598217073	3.5069575876579	3.38479756084793	3.45458363428009	3.1348152890378	3.14264274997642	-1.22489537909536	0.0251814886813147	0.149157547947258
Merged-chr6-29263770-4	chr6	29263682	29263882	+	979.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8706.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	4.59999339871917	4.78130373284617	4.85823945263059	5.12615961866971	5.5080014140453	5.07298883596387	5.36466132216918	5.03641314489106	0.744657387548269	0.0304352111693685	0.168873695979874
Merged-chr1-55529710-3	chr1	55529624	55529824	+	864.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	123778.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	3.70017673611462	3.72752683037758	3.88978206862082	3.90984384118487	3.37900491010658	3.46648627277629	3.78221997229011	3.35070525117527	-0.994237369272796	0.0483842417987055	0.227098051235744
Merged-chr1-91483457-4	chr1	91483300	91483500	+	888.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11268.0	NM_028718	74019.0	Mm.318430	NM_028718	ENSMUSG00000034292	Traf3ip1	3930402D05Rik|AU041749|MIP-T3	TRAF3 interacting protein 1	protein-coding	3.39967404085298	3.17869566010686	3.2899881047839	3.40468168432431	3.37081520565139	3.27962190441801	3.38649556288883	3.1681115385831	-0.067694328630148	0.898386148689414	0.962161683958468
Merged-chr2-101856305-4	chr2	101856183	101856383	+	780.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	-17303.0	NM_001110849	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	3.47893653888807	3.60393902152239	3.84419674304483	3.75418295395085	3.47990265295605	3.71133006631094	3.68507314919387	3.64649805643166	-0.168530309300821	0.726277356337448	0.891034932051019
Merged-chr11-102496358-4	chr11	102496247	102496447	+	828.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159492, intron 6 of 7)	intron (NM_001159492, intron 6 of 7)	-26464.0	NM_010575	16399.0	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	4.27917473611293	3.91281019536598	3.6324559265406	3.91583672484225	3.8731481616328	3.62361073312453	3.8372664879626	3.90070805960953	-0.38575915293904	0.41344210593483	0.708401031686854
Merged-chr1-172162207-2	chr1	172162107	172162307	+	726.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_151641, intron 2 of 13)	B3|SINE|B2	14192.0	NM_001357204	98193.0	Mm.159915	NM_153555	ENSMUSG00000026554	Dcaf8	AA408877|AA433120|AA792214|AU018973|C76055|D1Dau35e|D1Ucla4|H326|Wdr42a	DDB1 and CUL4 associated factor 8	protein-coding	2.62350019066525	2.78122522993592	2.62374729796307	2.87712728220548	2.58803502570882	2.93030777681723	2.87163950105321	2.99321631805595	0.511351693877797	0.439703320945324	0.727425871224001
Merged-chr6-72598495-4	chr6	72598400	72598600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026159)	promoter-TSS (NM_026159)	-87.0	NM_001253692	232089.0	Mm.167232	NM_144917	ENSMUSG00000056698	Elmod3	AI844780|C330008I15Rik|RBM29|Rbed1	ELMO/CED-12 domain containing 3	protein-coding	7.84181878528409	7.77142751846682	7.96230761183633	7.75468276120377	7.64572339618536	7.95244338504664	7.56305346173565	7.50249850119194	-0.203979648411764	0.258742121902517	0.570503856480368
Merged-chr13-42515132-3	chr13	42515024	42515224	+	923.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-165675.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	3.80146316111351	4.07325302352819	3.68736363714937	4.30359808325441	3.66565863486666	3.92239215149915	4.11957416149981	4.04853777450448	-0.162100669389501	0.737246623450743	0.896374281276027
Merged-chr13-117094953-2	chr13	117094853	117095053	+	857.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-35072.0	NR_046023	623312.0	Mm.131279	NR_046023	ENSMUSG00000114792	Gm6416	-	predicted gene 6416	ncRNA	3.49200361592195	3.49583480686855	3.54504886673022	3.11957567730705	3.39743194728321	3.55348534136058	3.36780821809762	3.49050941074946	0.141207894097924	0.788751459232586	0.91812687233996
Merged-chr3-10213442-1	chr3	10213342	10213542	+	896.0	f0_balb.idr	Intergenic	Intergenic	-4826.0	NM_024406	11770.0	Mm.582	NM_024406	ENSMUSG00000062515	Fabp4	422/aP2|AFABP|ALBP|ALBP/Ap2|Ap2|Lbpl|P15	fatty acid binding protein 4, adipocyte	protein-coding	3.20398389609449	3.10155903747236	3.26321964760116	3.70007656666292	3.22850925846347	3.18690710269926	3.30667541506524	3.20280620242958	-0.451116895964921	0.43822032591586	0.726297851003868
Merged-chr11-53430433-4	chr11	53430354	53430554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025352, intron 1 of 1)	intron (NM_025352, intron 1 of 1)	377.0	NM_025352	22272.0	Mm.251621	NM_025352	ENSMUSG00000044894	Uqcrq	1100001F06Rik|1500040F11Rik|5830407L17Rik|9.5kDa|AA959903|QP-C|Qpc|Uqcrb|c1502	ubiquinol-cytochrome c reductase, complex III subunit VII	protein-coding	5.46281771876769	5.879984733706	5.7634835511574	5.50019607754125	5.97918731262576	5.75757875718481	5.75810427553048	5.89707009152954	0.332800777924478	0.209025418693492	0.513413860974639
Merged-chr1-64308212-3	chr1	64308074	64308274	+	896.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186785.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	3.73157522687966	3.74528872992758	3.78842279451598	4.22157718184156	3.80333709818341	3.90915005295935	3.87820513769485	4.38967634567006	0.293191573651935	0.549865079170629	0.798182929229814
Merged-chr1-160234781-3	chr1	160234680	160234880	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038621, intron 6 of 8)	RMER6A|LTR|ERVK	-21888.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	4.65977413322478	4.7853598013713	4.62671136459618	4.7880294446352	3.34548220025593	3.97834481438291	3.70780420896823	3.90862504959749	-2.73109242694615	2.76462738992148e-08	1.34323148796738e-06
Merged-chr9-108344956-2	chr9	108344858	108345058	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-2873.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	3.07183376894699	3.45182994425297	2.94202305438374	2.78235337061909	3.1380381749844	3.30415452283606	3.06115243423783	3.07066940428754	0.243504663708355	0.692392231690661	0.874911888150356
Merged-chr11-116103718-4	chr11	116103629	116103829	+	861.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6506.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	4.18960920735033	4.12922661599594	4.14584312817979	3.93269811614028	4.40948472352785	4.01955038059801	3.76933504658223	4.18762944374724	0.0911395133234277	0.83624356883695	0.93770267971445
Merged-chr15-103239502-4	chr15	103239413	103239613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002885)	promoter-TSS (NR_002885)	339.0	NM_001358950	12419.0	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	7.55686258351573	7.81947565219193	7.36849717555532	7.87863812688826	7.79803759355537	8.00900403276827	8.00487343598718	7.6678903629071	0.251411525982162	0.199118504273371	0.500933329503325
Merged-chr10-12875065-4	chr10	12874943	12875143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13308.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	7.61761706290745	7.41943270101958	7.46567816067281	7.56008877482897	7.74836058542027	7.50122020717435	7.72517033649447	7.31860678948525	0.0956791842395102	0.606355099737576	0.829368409964156
Merged-chr6-108723438-3	chr6	108723361	108723561	+	912.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59598.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	3.84791329985176	3.85216461083384	4.33413338708577	4.55626311540084	3.15201858043815	3.35623506971694	3.30035916942941	3.30950494698629	-3.23708985175863	1.85130581514895e-07	7.52564800779482e-06
Merged-chr4-88315243-4	chr4	88315174	88315374	+	808.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 21 of 43)	(TCCC)n|Simple_repeat|Simple_repeat	123652.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	4.05027199139489	3.97036533831086	4.09690520346326	3.79767373562481	4.30975751825354	3.9694688284692	3.93717777392806	4.04842635331964	0.306015320121279	0.478033920185609	0.754192228775143
Merged-chr3-79539916-4	chr3	79539851	79540051	+	938.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	27728.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	4.21805149272077	4.12016568620822	4.30318949225796	4.70162341859993	4.00721439478971	3.80722031659	3.85496278608061	4.12569574129809	-1.07150796168595	0.0167943131558341	0.113609809553233
Merged-chr2-158375618-3	chr2	158375532	158375732	+	562.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175692)	promoter-TSS (NM_175692)	-6.0	NM_175692	319317.0	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	3.63274401078021	3.09443135844501	3.53516589370445	3.45110975558272	3.50263933894553	3.36305343090387	3.41547127592056	3.37033893643763	-0.0806922601473029	0.879904458006189	0.955027743464815
Merged-chr16-44832493-4	chr16	44832401	44832601	+	952.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207244, intron 2 of 5)	intron (NM_207244, intron 2 of 5)	11773.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	4.58932861231299	4.28116581640738	4.83859533821858	4.56728572983511	4.73044633181546	4.35821441975613	4.44640897403653	4.58707907200635	-0.0695573807191903	0.854394230249382	0.945141310652665
Merged-chr14-54937011-3	chr14	54936905	54937105	+	635.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029390, intron 1 of 3)	intron (NM_029390, intron 1 of 3)	508.0	NM_029390	67272.0	Mm.41614	NM_026066	ENSMUSG00000040759	Cmtm5	1500005P16Rik|2900052H21Rik|Cklfsf5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding	3.26931321706015	3.15921462792501	3.32608580409343	3.28646362050664	3.35215344028677	2.90112860726582	3.31323110453043	3.65377178316239	0.265268218362833	0.652677236778796	0.854764223296605
Merged-chr11-80378022-4	chr11	80377923	80378123	+	766.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027472)	promoter-TSS (NM_027472)	-8.0	NM_027472	70591.0	Mm.86860	NM_027472	ENSMUSG00000057181	5730455P16Rik	-	RIKEN cDNA 5730455P16 gene	protein-coding	3.96730167792698	4.0626135567098	3.53243343462473	3.34021840000739	3.8442995173069	4.22617955760045	3.75249705957215	3.86945590789271	0.50501469533488	0.326603360353749	0.638101135996362
Merged-chr2-132816129-4	chr2	132816016	132816216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356443)	promoter-TSS (NM_001356443)	-25.0	NM_025676	66634.0	Mm.157070	NM_025676	ENSMUSG00000027353	Mcm8	5730432L01Rik	minichromosome maintenance 8 homologous recombination repair factor	protein-coding	8.48664881175008	8.35962163185668	8.26058132829379	8.2783026830254	8.31789229299512	8.37262622887448	8.45838835085706	8.23766227873849	0.00237612256223851	0.987749584157936	0.995345704315685
Merged-chr4-11455014-2	chr4	11454914	11455114	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-30944.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	4.35747219886493	4.64896395167835	4.69730958629476	4.1517551331321	4.55387915509228	4.86924040664949	4.84702974604554	4.69416691741481	0.601193928716246	0.112130024873602	0.37008731524057
Merged-chr2-144338307-3	chr2	144338209	144338409	+	737.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-6229.0	NM_026924	107586.0	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	3.49935394744083	3.36646164606946	3.32473821440899	3.00286945567259	3.57334526096113	3.56200354853523	3.2496143162249	3.95189631524644	1.02497038474479	0.0649706514816094	0.271138954139861
Merged-chr19-4112346-4	chr19	4112229	4112429	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_075078, exon 22 of 24)	non-coding (NR_075078, exon 22 of 24)	9246.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	3.71649817890904	4.1990165285982	3.98544096868942	3.95240200285692	4.15501896190181	4.05775653073964	4.01565821148691	3.88237256254234	0.160535913590243	0.71247897163985	0.884883193843292
Merged-chr7-5053139-2	chr7	5053039	5053239	+	850.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_026900, exon 2 of 2)	exon (NM_026900, exon 2 of 2)	1607.0	NM_026900	68992.0	Mm.41484	NM_026900	ENSMUSG00000055633	Zfp580	1500015O20Rik|AI838225|Znf580	zinc finger protein 580	protein-coding	3.22117939451964	2.82794662870972	3.37676242285791	2.77997838741224	2.86765107810905	3.15821097093366	3.0947730032497	3.21975151001802	0.0779433388303107	0.901737653183913	0.963514762035143
Merged-chr10-77537857-3	chr10	77537778	77537978	+	965.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	7530.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	3.27420213504551	3.25981424783999	3.71479776598418	3.40885550917186	3.103318180269	3.26386600815398	3.14165960117925	3.15072301533393	-0.982796004845488	0.0796535276001736	0.305658442021282
Merged-chr5-105145921-4	chr5	105145811	105146011	+	959.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6325.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	4.86102700183026	4.64629363880807	4.56236275152296	4.71040154532517	5.22930149470363	5.63043543693406	5.07977776184467	5.10167271275274	1.11398643616836	0.00075143609545426	0.0107116483032923
Merged-chr10-17723150-4	chr10	17723051	17723251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010828)	promoter-TSS (NM_010828)	-77.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	7.820809231937	7.78715941777605	7.37120273397938	7.66455574053801	8.10300708931999	8.08725854500783	7.77663558462779	7.92549311612649	0.400722989932419	0.0297278859280445	0.166261452027722
Merged-chr14-76505961-3	chr14	76505871	76506071	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310647, intron 2 of 2)	intron (NM_001310647, intron 2 of 2)	1461.0	NM_009366	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	4.99106370448513	4.87962942869666	4.90351138218351	4.95518642361999	3.97469220847956	3.87791504596007	4.05598841023856	4.23306924281546	-2.15229957124031	9.33064382376134e-08	4.01539236234286e-06
Merged-chr11-116534440-4	chr11	116534355	116534555	+	873.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011451)	promoter-TSS (NM_011451)	-285.0	NM_011451	20698.0	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	4.43373900723243	4.62676796016973	3.79414105991647	3.68515462099054	4.53858063489729	4.30486503297776	4.20453438028066	4.17423359059013	0.290227885008525	0.553009437873425	0.799974396526481
Merged-chr9-100507756-4	chr9	100507654	100507854	+	933.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324530)	promoter-TSS (NM_001324530)	-898.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	4.69356577932697	4.70410435754791	4.76613735787311	4.98050814008492	4.51114855504003	4.33414316767442	4.59667938514017	4.20361838097862	-0.832380173958864	0.0247147218152989	0.147334102520198
Merged-chr7-143287463-4	chr7	143287373	143287573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_001461, exon 1 of 1)	non-coding (NR_001461, exon 1 of 1)	9074.0	NR_001461	63830.0	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	5.30204356942138	5.36867424354954	5.49289873043479	6.02260131633333	5.85583907310532	5.44905333268136	5.88458361141187	6.05004678479028	0.370228253417499	0.245582832037039	0.556700748185878
Merged-chr1-58770327-4	chr1	58770236	58770436	+	956.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25038.0	NM_009812	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	5.80393118750997	5.4894160756866	5.13854513193042	5.07679763551423	5.20173904312639	5.28099622854392	4.89500041123321	5.06572913013626	-0.511332553107137	0.130670930772258	0.402380539971383
Merged-chr2-90749850-4	chr2	90749765	90749965	+	970.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018828, intron 2 of 16)	ORR1B1|LTR|ERVL-MaLR	4495.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	4.39532722043867	5.04088830860778	4.54682963665901	5.10198318762847	5.22353852493601	5.01947423082915	4.89420343749857	5.31084840592623	0.577037965917213	0.124919387468942	0.392255032673894
Merged-chr10-60246714-4	chr10	60246600	60246800	+	892.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27440.0	NM_016803	53374.0	Mm.12866	NM_016803	ENSMUSG00000057337	Chst3	C6ST|C6ST-1|GST-0	carbohydrate (chondroitin 6/keratan) sulfotransferase 3	protein-coding	5.02462685417263	4.94949471881752	4.64468442083734	4.74453361727239	4.7271822585549	4.60383266323787	4.66259252684028	4.37393955195564	-0.507930475986412	0.15348894297845	0.438150323094907
Merged-chr16-22439812-4	chr16	22439712	22439912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023794)	promoter-TSS (NM_023794)	-242.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	8.88608734524651	9.17073909638416	9.09809808556803	8.91869738061269	9.06964001041113	9.08463291805016	9.14960999076022	8.96828247952441	0.0587094516070538	0.692030389529884	0.87471864571853
Merged-chr8-22060619-4	chr8	22060522	22060722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243161)	promoter-TSS (NM_001243161)	-99.0	NR_040650	207958.0	Mm.267439	NM_183142	ENSMUSG00000063362	Alg11	AI849156|AW492253|B230397C21|Mmat-4(5)	asparagine-linked glycosylation 11 (alpha-1,2-mannosyltransferase)	protein-coding	8.71556531872799	8.83433195949772	8.89613229870066	9.04891820493044	8.814362517685	8.99981588353782	9.20423130681207	8.79604716679683	0.0982579736908288	0.556332589927411	0.801921676291934
Merged-chr4-95054703-4	chr4	95054588	95054788	+	910.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2466.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	4.40874072627433	4.1867293960636	4.17200150684922	4.59490868784832	4.93398476698082	4.49454982560353	4.3007163670315	4.53047507508057	0.518500269846144	0.205711808200526	0.509441263513508
Merged-chr4-129495918-4	chr4	129495827	129496027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4737.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	7.80783051894685	8.19522671268205	7.63788894536868	7.57962567038546	7.7184410728081	7.87512152495563	7.9010619890344	7.64137108281661	-0.0506563850240113	0.80139737932083	0.923365533732052
Merged-chr9-54501929-4	chr9	54501850	54502050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172771)	promoter-TSS (NM_172771)	-324.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	7.74874131901893	8.14648037237128	7.75004305218228	7.73779963165252	8.01437724925328	7.9595645861686	8.06834170401395	7.58060253831179	0.0831670037945728	0.669571710433778	0.86357079102718
Merged-chr2-166907126-4	chr2	166907030	166907230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023565, intron 1 of 24)	intron (NM_023565, intron 1 of 24)	1034.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	5.94122093501844	5.81023815306706	5.52246735264179	6.01770879710367	5.74075247860752	5.72804726828368	5.63250104669624	5.57580139689512	-0.290512369128133	0.27609213576313	0.588117974905995
Merged-chr10-115385671-4	chr10	115385559	115385759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033261, exon 1 of 35)	exon (NM_001033261, exon 1 of 35)	700.0	NM_001033261	216345.0	Mm.207621	NM_001033261	ENSMUSG00000034163	Zfc3h1	BC033596|Ccdc131|Psrc2	zinc finger, C3H1-type containing	protein-coding	6.16134892016334	6.24197524236777	6.95922448533442	6.43025239858955	6.2921730786919	6.5949077643291	6.5967043067502	6.79435177333562	0.134661864449949	0.61000822074042	0.831398279446287
Merged-chr8-40926655-2	chr8	40926548	40926748	+	718.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_026840, intron 1 of 5)	intron (NM_026840, intron 1 of 5)	415.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	3.08500340522422	3.30564745634074	3.43919394363742	3.08480326217818	3.20536166981844	3.44602309976301	3.47457044642707	3.27245788489907	0.441058544268405	0.417099974630246	0.710869626812717
Merged-chr17-6314213-3	chr17	6314110	6314310	+	745.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166629, intron 2 of 4)	B2_Mm1t|SINE|B2	3264.0	NM_001166629	100310872.0	Mm.381893	NM_001166629	ENSMUSG00000092074	Dynlt1a	-	dynein light chain Tctex-type 1A	protein-coding	2.74742101704937	2.95015450911113	2.82988563471515	2.50947474302836	3.6628799606329	3.73281008548637	3.44839827099678	3.46247173055666	3.65315340634943	1.07249957089212e-08	5.65477384863188e-07
Merged-chr6-42692279-4	chr6	42692182	42692382	+	993.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355769, intron 1 of 8)	intron (NM_001355769, intron 1 of 8)	818.0	NM_029930	77574.0	Mm.24652	NM_029930	ENSMUSG00000036667	Tcaf1	2810407D09Rik|3321401G04Rik|A230020K05Rik|AI848529|Fam115a	TRPM8 channel-associated factor 1	protein-coding	5.62123254268725	5.57982177512064	6.05706307618288	6.19911775014107	5.29254723000117	5.30243287618449	5.39879984046595	5.29498309546972	-0.996829975111494	0.000801602367810775	0.0112627822618245
Merged-chr9-78149990-4	chr9	78149909	78150109	+	912.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163780, intron 5 of 13)	intron (NM_001163780, intron 5 of 13)	-25905.0	NR_040401	320295.0	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	4.52476310031678	4.40126322307891	4.19656022425044	3.80185988960138	5.07951466226423	4.61721179335284	4.37432846910098	5.05702636142174	1.27348743793336	0.00285851490444752	0.0307977470171432
Merged-chr11-83224391-4	chr11	83224281	83224481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015519, intron 2 of 3)	intron (NR_015519, intron 2 of 3)	805.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	6.59065166417811	6.5398195803377	6.59181409650842	6.44398813433668	6.90949744528351	6.68624077764187	6.50970976546493	6.75095304846236	0.281188254082174	0.182182700782	0.47878218634963
Merged-chr2-166301412-3	chr2	166301312	166301512	+	906.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27504.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	3.64121867753021	3.51659479127917	4.00626539914583	3.36812939999024	4.38066037031691	4.70238235167132	4.87428370058468	4.41459256019282	2.54238458406492	2.15902316179138e-08	1.07614300288988e-06
Merged-chr15-63932895-3	chr15	63932788	63932988	+	842.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 11 of 11)	intron (NM_001360037, intron 11 of 11)	18427.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	3.47556728387474	3.68337194840113	3.83942051015086	3.76800279605312	3.62428112974327	3.3953919285039	3.7298862808358	3.64247851090231	-0.301196141148782	0.537219440051966	0.790977285921248
Merged-chr11-60699705-4	chr11	60699606	60699806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159405)	promoter-TSS (NM_001159405)	16.0	NM_008502	16897.0	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	LLGL1 scribble cell polarity complex component	protein-coding	6.32043176504692	6.07105269856195	6.33904902787411	6.16657233148908	6.20924382500778	6.03645354795043	6.0160787118537	6.28130513834065	-0.117157461025991	0.614382192032101	0.833834687279607
Merged-chr4-136020819-4	chr4	136020706	136020906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013736, intron 1 of 10)	intron (NM_013736, intron 1 of 10)	843.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	5.67720325385716	5.58861346515473	5.75177156294719	5.94080864629434	5.49852020915755	5.60491952092755	5.46045600002145	5.79440487038937	-0.282031595151747	0.298100431282537	0.610270372983396
Merged-chr2-132212414-3	chr2	132212289	132212489	+	901.4523929999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35399.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	3.3921021904367	4.04529995466679	3.74158351269659	3.69854696854175	3.57774831890761	3.91197328494378	3.56504032692772	3.73940950358489	-0.118510898331048	0.813380183495146	0.927857767644014
Merged-chr2-131491906-4	chr2	131491814	131492014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177836)	promoter-TSS (NM_001177836)	52.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	5.6861946252396	5.46665335339705	5.68718903747101	5.88521342617052	5.64987994604097	5.61838207691805	5.55600425219426	5.46796387819135	-0.211184031705909	0.435737239735191	0.724813945806151
Merged-chr17-31905955-4	chr17	31905868	31906068	+	983.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50164.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	5.72057722738231	5.70909886410611	6.20596228267797	5.81691958972987	4.91420919329801	5.02639687051774	5.46037749480778	5.42608311108613	-1.13346404972646	0.000262801120408356	0.00454580331938008
Merged-chr2-28793126-3	chr2	28793040	28793240	+	896.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033874, intron 11 of 12)	RLTR34C_MM|LTR|ERVK	47220.0	NM_172977	269252.0	Mm.26043	NM_172977	ENSMUSG00000035666	Gtf3c4	5330400C03|AI426938|AU014771|AU017413|KAT12|TFIIIC90	general transcription factor IIIC, polypeptide 4	protein-coding	4.50961838120634	4.27266161081189	4.02556399354492	3.97455507670884	3.81613530397415	3.9348526150641	3.67850702017122	4.24795457628197	-0.722330005493742	0.12146614293538	0.385992168757419
Merged-chr17-35380340-4	chr17	35380323	35380523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001143689, exon 3 of 6)	exon (NM_001143689, exon 3 of 6)	806.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	6.3216697054159	6.62665094147145	6.38839304822255	6.06301396637158	5.80226223874033	5.61449128875754	5.56186935257794	5.55581793018313	-1.12533165560972	2.76671254458589e-05	0.000677906479211977
Merged-chr2-84788490-4	chr2	84788375	84788575	+	957.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10353.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	4.47747004932904	4.54135618096537	4.86190012745955	4.82514559806575	5.25756492811665	5.14087888344949	5.13138808429894	4.99830771794296	0.869500253512504	0.00889403442910311	0.0725496764415689
Merged-chr13-95390393-3	chr13	95390278	95390478	+	702.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15021.0	NM_025630	66549.0	Mm.36785	NM_025630	ENSMUSG00000021681	Aggf1	2010009L17Rik|2310029P06Rik|AW112072|Peg3|VG5Q	angiogenic factor with G patch and FHA domains 1	protein-coding	3.41086152520151	3.33827369195454	3.35532910890203	3.48577795081592	3.48514192992745	3.40819394938321	3.39823431232705	3.29528643361109	-0.00998148279028973	0.984340515174724	0.994305370135138
Merged-chr9-70651135-3	chr9	70651021	70651221	+	928.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172772, intron 1 of 8)	RMER5|LTR|ERV1	6053.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	3.98998428593763	4.08186702699558	4.26358821304614	4.532580406197	3.77013482152468	3.82972956737569	3.86972470132163	4.30105384719786	-0.761735566198615	0.0998042819515614	0.34656888403894
Merged-chr8-120436911-4	chr8	120436826	120437026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51940.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	5.87368220477726	6.19163590952621	5.96927161060538	6.06866982421866	6.41049655264854	6.2327983789587	6.22155625047417	5.76852251551179	0.234447959602831	0.360042445837319	0.665611988334495
Merged-chr17-64201832-4	chr17	64201727	64201927	+	906.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	130056.0	NM_144859	224938.0	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja ring finger ubiquitin ligase 2	protein-coding	4.43227977516183	4.25426177014313	4.80640038229969	5.18630698590133	4.71675729035684	4.51571669717821	4.95010408365851	5.00236907103153	0.142354386671056	0.7352472337745	0.895458265225432
Merged-chr11-54998453-4	chr11	54998324	54998524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 13 of 24)	intron (NR_138556, intron 13 of 24)	35047.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	4.63826004626951	4.71258327212453	4.59711612961184	4.68481944585595	4.79403600235222	4.96635513947546	4.87686261832021	4.96260692520297	0.485304467758679	0.137616213288107	0.412680504113337
Merged-chr17-8856628-4	chr17	8856526	8856726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 1 of 21)	intron (NM_001347321, intron 1 of 21)	6641.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	5.38983699699673	5.31577594146098	5.81187666171709	5.75277203866252	6.19244168585102	6.22453563767691	6.18524321874211	5.60048127626063	0.777148352214867	0.00758664897592688	0.0646920507581164
Merged-chr19-41333114-4	chr19	41333009	41333209	+	942.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	MTE2a|LTR|ERVL-MaLR	51961.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	4.43692440838281	4.66045050777821	4.69658148002188	5.08081336543365	4.58038474289968	4.70637297522934	5.01233682014366	4.73200108644494	0.0022791705624451	0.995178243108077	0.998253678348653
Merged-chr8-83109966-4	chr8	83109874	83110074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55378.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	6.67801277425247	6.74603174993471	6.72234555798072	6.59533350450491	6.37088419976687	6.40425635966666	6.45680929253344	6.56761259993216	-0.338061974601701	0.102173339278823	0.350892411296311
Merged-chr6-97447193-4	chr6	97447083	97447283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	12103.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	6.66172972027236	6.40016023272822	6.32666099716664	6.72592715198653	6.18897079868276	6.07285563277702	6.31239228367252	6.08012159955454	-0.569589169053176	0.0143906566716501	0.101860834450217
Merged-chr19-41265817-4	chr19	41265695	41265895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1791.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	4.76508681267144	4.6281196034433	4.68484992968748	4.50583156417881	5.01827860118836	5.08709105243172	5.14081316741432	5.10467997839588	0.914070989146323	0.00409834908771326	0.0408394777704525
Merged-chr3-79126860-3	chr3	79126756	79126956	+	701.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	18031.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	2.53807033168439	2.47857436301559	2.53829234955766	2.44562655731394	3.05606515958979	3.1728159153958	2.98961106529338	3.05563935315612	2.81895943224146	2.26783762733761e-05	0.000569391232720508
Merged-chr18-46313317-4	chr18	46313228	46313428	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1400.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	5.79206570044466	5.57143642400538	5.79310792549678	5.85004634535763	4.90310768101016	4.86097697106582	4.91512123957559	4.66905177421504	-1.68774189615277	3.11662408684313e-08	1.4938598375583e-06
Merged-chr9-90233969-4	chr9	90233864	90234064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	36805.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	5.48940595560551	4.94401396582643	5.35860848635665	5.04016227568094	4.96300074840158	5.35383551308113	5.21618016964576	5.17614127502105	-0.0680579307333537	0.832712987854077	0.936050879841843
Merged-chr2-48930492-4	chr2	48930390	48930590	+	655.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149356, intron 6 of 13)	intron (NR_149356, intron 6 of 13)	18777.0	NM_001177313	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	3.60731286525612	3.32776413244231	3.70566052920657	3.60929359841469	3.59645795142163	3.3721168492609	3.68946591040023	3.25837767818827	-0.243208898903861	0.641261776692662	0.84863530101299
Merged-chr13-34643116-4	chr13	34643018	34643218	+	753.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025831, intron 1 of 4)	intron (NM_025831, intron 1 of 4)	9563.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	3.89412669398656	4.0264663932337	3.48033704085003	3.90422295482473	4.16031577860695	4.1627300528464	3.71832958876324	4.12400536054032	0.566380238737485	0.229062357754741	0.538010661957944
Merged-chr3-10351424-4	chr3	10351308	10351508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331015)	promoter-TSS (NM_001331015)	-91.0	NM_001331014	66361.0	Mm.371617	NM_025512	ENSMUSG00000039795	Zfand1	2310008M20Rik|AW048890	zinc finger, AN1-type domain 1	protein-coding	8.56944477351921	8.76241895479931	8.97149409662516	8.66098996311914	8.74573534359065	8.51227028312422	8.94876340216771	8.54129601093705	-0.0589055982181661	0.736566419252025	0.896043754662457
Merged-chr10-127634677-4	chr10	127634581	127634781	+	890.4874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-8305.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	4.38130044846424	5.04417902398082	4.63433292228583	4.7430848102647	4.35649190110814	4.309866118812	4.45151759399589	4.55265172487927	-0.689012845427909	0.0718146452366367	0.28789488040294
Merged-chr1-127776247-3	chr1	127776141	127776341	+	851.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028399, intron 2 of 8)	intron (NM_028399, intron 2 of 8)	2077.0	NM_028399	72949.0	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	3.66230813290537	3.81573140150245	3.43292111735382	3.74774834859085	3.72064101691364	3.60938656548536	3.88453145915298	3.49253533826647	0.0248269062166321	0.959386966403585	0.985513818852278
Merged-chr8-111643963-4	chr8	111643887	111644087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358993, intron 1 of 3)	intron (NM_001358993, intron 1 of 3)	544.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	7.4299349833914	7.39505401125609	6.98290312731606	7.18512676231115	7.37998557857207	7.5793805944587	7.40371199933152	7.0688459900066	0.149569225487107	0.465837799069613	0.74623053314012
Merged-chr13-86046776-4	chr13	86046610	86046810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007749)	promoter-TSS (NM_007749)	85.0	NM_007749	12867.0	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	7.11708732071231	7.40802153431594	7.92719216123312	6.98876235367001	7.5624918673196	7.53406324890538	7.60423072394094	7.61158222207421	0.230371834659319	0.330411658191137	0.641806882938188
Merged-chr17-64332162-4	chr17	64332053	64332253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144859)	promoter-TSS (NM_144859)	-270.0	NM_001025309	224938.0	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja ring finger ubiquitin ligase 2	protein-coding	10.1090854843354	10.1315507601144	10.2135967631909	10.2596688593018	10.2475244194673	10.4413517025111	10.4820885568248	10.1744531800427	0.195268092069448	0.163543600555476	0.453287252986186
Merged-chr10-19547033-4	chr10	19546911	19547111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44938.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	5.09843782744779	5.69246704041664	5.31034371233204	5.54906631813094	5.75151024344166	5.48781264659421	5.82634952821171	5.62146068612024	0.401514437260595	0.168037318398629	0.460010318306836
Merged-chr15-59599058-4	chr15	59598959	59599159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 6 of 6)	intron (NM_026746, intron 6 of 6)	-49595.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	6.58249520284455	6.46457921826088	6.46972185417422	6.69898832967608	6.39471165708224	6.62865168720311	6.55004572707612	6.2623945619738	-0.153448069211829	0.483403622014856	0.757806109710285
Merged-chr19-7235028-4	chr19	7234915	7235115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027643, intron 2 of 7)	intron (NM_027643, intron 2 of 7)	6207.0	NM_027643	70999.0	Mm.329605	NM_027643	ENSMUSG00000024764	Naa40	4931433E08Rik|AU023197|Nat11|NatD	N(alpha)-acetyltransferase 40, NatD catalytic subunit	protein-coding	6.20696273300986	5.91299332098698	5.53574759172959	5.76500034538875	5.98442228763434	5.9360703640061	5.98340792881293	6.0712200014676	0.196792265596386	0.451772055311033	0.736246988273402
Merged-chr8-46791979-5	chr8	46791876	46792076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	52231.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	5.26807027874053	4.62789607312532	5.58805300869909	5.19623664233338	4.76613968756175	4.89665707754508	4.89237331039341	4.83666150632512	-0.705811347448393	0.0500084823985828	0.231802146955504
Merged-chr5-23432945-4	chr5	23432844	23433044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040469, exon 1 of 1)	non-coding (NR_040469, exon 1 of 1)	1409.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	8.29993412985991	8.16207924319298	8.02277419131131	8.17970219025733	8.0873610894304	8.24697251131816	8.07575989191436	7.91869509272755	-0.107494389823106	0.512055983570715	0.775675608570773
Merged-chr4-6369938-4	chr4	6369836	6370036	+	963.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	4256.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	4.57036195404418	4.45215361880309	4.61209013785489	5.098927900093	4.64174162182086	4.42271793501368	4.74132938643496	4.72462450064131	-0.197330164311928	0.60928151730927	0.830965237885955
Merged-chr5-115559878-4	chr5	115559728	115559928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007475, exon 2 of 7)	5' UTR (NM_007475, exon 2 of 7)	361.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	7.26819378401457	7.79889468876788	7.30153235219179	6.44313650045839	7.40199194384496	7.88133185468356	7.32659122329169	7.29642724246638	0.282939121580304	0.328811122842517	0.640144325858488
Merged-chr3-60219208-3	chr3	60219116	60219316	+	805.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137347.0	NM_032400	84112.0	Mm.125110	NM_032400	ENSMUSG00000027762	Sucnr1	Gpr91	succinate receptor 1	protein-coding	3.6572751261214	3.9540391270493	3.98755158217165	3.41569404915184	3.66372514631586	3.72171930255088	3.69487761542035	3.21520577435099	-0.548337835476353	0.311664168074281	0.623665218229603
Merged-chr9-48495339-4	chr9	48495235	48495435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001326356)	promoter-TSS (NM_001326356)	-5.0	NR_136937	67010.0	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	7.68923527499071	7.70294956184333	7.34590671012882	7.43307234710455	7.72409076262494	7.84310248978373	7.86858136483463	7.44363542855586	0.238297544835119	0.212707068548064	0.517670706102327
Merged-chr2-78923129-4	chr2	78923033	78923233	+	910.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151457, intron 6 of 6)	intron (NR_151457, intron 6 of 6)	53455.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	4.78594560947627	4.60958568757599	5.13899134805891	5.16500459417752	4.63386172700904	4.80525231220603	4.47799984128446	4.49510234226832	-0.725710650949137	0.0474547935066377	0.224452438501493
Merged-chr11-69919882-4	chr11	69919761	69919961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166593, intron 1 of 6)	intron (NM_001166593, intron 1 of 6)	769.0	NM_001166590	276770.0	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	6.61087913118512	6.90506065078174	6.61204713249868	6.05866000886127	6.79259401935144	6.90805953507163	6.63943405633982	6.60732298852353	0.249698721405879	0.326239465226936	0.637796455613789
Merged-chr1-121135856-4	chr1	121135740	121135940	+	896.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	48435.0	NR_110450	98452.0	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	4.06616227290369	3.86194637476821	4.11679679780141	3.95977294275794	4.33970022473421	4.14027784907426	4.70461934595797	4.41856707889745	1.03363690730678	0.0111217091770354	0.0851034334027311
Merged-chr5-102055872-8	chr5	102055793	102055993	+	962.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	14028.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.95607867752574	3.84383439415058	4.0962317566493	3.68786262208682	4.01965052162772	3.80472902663643	3.83878062534044	4.36878101325132	0.372334705930063	0.416642086999445	0.710633736953261
Merged-chr19-41334714-4	chr19	41334599	41334799	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	50371.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	5.57707763584184	5.29060018535341	6.00708722856249	5.51734377609148	5.32315700634139	4.97854653101198	4.90135908970596	5.86899954969222	-0.50430756058651	0.165342257957067	0.45599971246953
Merged-chr4-126153063-4	chr4	126152969	126153169	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025856, intron 6 of 11)	intron (NM_025856, intron 6 of 11)	5066.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	5.0904005433977	5.34436819834383	5.58316965414915	5.61684544698621	5.28353100930793	5.03113215146958	5.62854265911013	5.98798709297683	0.171094613689415	0.61716315696955	0.835375923972642
Merged-chr5-5334142-4	chr5	5334046	5334246	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	ORR1D2|LTR|ERVL-MaLR	46105.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	4.76043607276656	4.65716924245057	4.72134231654385	4.54152975694381	4.90145967908389	4.93669074482186	5.07800914899556	5.26764995554033	0.789109954319267	0.015945687992994	0.109428206643611
Merged-chr9-77737730-6	chr9	77737768	77737968	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-16667.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	4.22797315096022	4.34434003146075	4.22859135481585	4.48748561463218	4.44125803723596	4.89253183853945	4.76707944048602	4.32291140715792	0.631983060409033	0.107735966004008	0.362030890576869
Merged-chr11-62810585-4	chr11	62810480	62810680	+	978.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9673.0	NM_053169	94092.0	Mm.117087	NM_053169	ENSMUSG00000047821	Trim16	9130006M08Rik|AI482483|EBBP	tripartite motif-containing 16	protein-coding	4.62303024124032	4.49095226324913	4.32539469705742	4.75979248054965	4.79105984432453	4.35357631932794	4.25859950553342	4.72974939328747	-0.0167288253444621	0.966076571728213	0.988022131369328
Merged-chr1-51938579-4	chr1	51938487	51938687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22609.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	6.82039361657017	6.51340239741913	6.83529300886733	6.73776411038326	6.83503201185461	6.6163181443957	7.03494620589544	6.95971439172352	0.200566451708286	0.339524697656153	0.648774648981312
Merged-chr1-23382199-3	chr1	23382078	23382278	+	854.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081079, intron 1 of 6)	intron (NM_001081079, intron 1 of 6)	997.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	3.68410439695542	3.34598798088057	3.73645713927505	3.80325559080029	3.6881758583029	3.80281419502326	3.77021084327891	3.78403264096885	0.292880453303323	0.542082544695048	0.793666559339493
Merged-chr3-79794349-4	chr3	79794227	79794427	+	682.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	48335.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	3.61733526571783	3.53544436036944	3.61782489019526	3.36029376267975	4.0043848844942	3.67859761202024	3.93999286748501	3.7225451585093	1.00376756681656	0.0327603992048867	0.177418312688904
Merged-chr13-30545364-4	chr13	30545271	30545471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025710)	promoter-TSS (NM_025710)	-55.0	NM_025710	66694.0	Mm.181933	NM_025710	ENSMUSG00000038462	Uqcrfs1	4430402G14Rik|AI875505	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	7.33640871500535	7.70171992639816	7.62131100012024	7.68574242254522	7.97869074914971	7.97012015498281	7.90530317990058	7.6160915000078	0.362258873031882	0.0489692721592744	0.228832971574645
Merged-chr4-129035276-4	chr4	129035185	129035385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-22986.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	6.47779393793667	6.66797113289512	5.97190912836303	5.95343390249331	6.43109678244585	6.44580527160132	6.29299970155588	6.0821225730643	0.0374033604188239	0.890618246748962	0.95908070116107
Merged-chr13-99100674-4	chr13	99100557	99100757	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12736.0	NR_045495	69603.0	Mm.390632	NR_045495	ENSMUSG00000100410	2310020H05Rik	-	RIKEN cDNA 2310020H05 gene	ncRNA	5.80649819651308	5.32649016620273	5.66596806488731	6.21349178858916	4.99670052189192	5.56565457248742	5.50654704219502	5.53059383416277	-0.675752166283847	0.0419373048977356	0.20746840598526
Merged-chr2-152737441-5	chr2	152737311	152737511	+	921.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010495)	TTS (NM_010495)	1160.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	3.55335760475719	3.63677755524093	3.18508495672212	3.25060501440521	3.62150448037434	3.67136987112082	3.77978358363235	3.44007209729798	0.714927638116762	0.166835011296498	0.458273771972873
Merged-chr1-156559906-2	chr1	156559806	156560006	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	1119.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	3.35560963722022	2.79858233495092	2.88495147227037	2.57223162797048	2.99051200026812	3.31512648803304	3.00803659007193	3.35395403464896	0.970065577304573	0.143990350222566	0.422642851071835
Merged-chr1-73902466-4	chr1	73902354	73902554	+	815.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37988.0	NR_045311	109198.0	Mm.359721	NR_045311	ENSMUSG00000100301	6030407O03Rik	-	RIKEN cDNA 6030407O03 gene	ncRNA	3.92161346163767	3.77282013285684	3.87058562732558	4.23665038959425	3.82897080731218	3.99179401661185	3.90595843781594	4.27056588921229	0.072737483332328	0.874294303732593	0.952841261958902
Merged-chr8-103632665-4	chr8	103632565	103632765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045730, intron 1 of 4)	intron (NR_045730, intron 1 of 4)	28866.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	5.05164275994426	5.02555826209875	5.32516550093967	5.55557278702038	4.92767016631882	4.48877345812199	5.12464627202173	5.04905276653865	-0.667515085486562	0.0582557834913105	0.253707073735193
Merged-chr8-94804739-4	chr8	94804621	94804821	+	897.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5732.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	3.86774586119096	4.00280079260284	4.02926229206534	4.1013815653982	4.26198460578791	4.04692157857573	4.46868570181565	4.33882869786405	0.698827542718946	0.0890458478877607	0.325572042138093
Merged-chr5-102066900-3	chr5	102066688	102066888	+	750.518494	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	3133.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	2.83259677646501	2.76191544677211	3.0284679974076	3.37572104898011	3.12498211527109	3.13714637228736	3.01782276892382	3.08604602681571	0.217314253192703	0.73663138994003	0.896043754662457
Merged-chr3-50406125-4	chr3	50406038	50406238	+	961.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011990, intron 6 of 11)	intron (NM_011990, intron 6 of 11)	37475.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	6.27918142824092	5.89535240645998	6.497068259968	6.31050453923751	4.98861034381098	5.42447416515363	5.8086776457184	5.81028128238486	-1.16460169668343	0.000186612216080873	0.00343404108800943
Merged-chr8-22140944-2	chr8	22140811	22141011	+	789.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011848, intron 11 of 15)	RLTR44A|LTR|ERVK	-15844.0	NM_001347318	330721.0	Mm.113940	NM_177898	ENSMUSG00000037738	Nek5	6530411J22|BB049667	NIMA (never in mitosis gene a)-related expressed kinase 5	protein-coding	2.48833044037881	2.38806441174295	2.43068245037948	2.55266839534926	1.93279344841518	2.02937817168364	2.08858952050883	2.01389435490595	-4.60956803832313	8.48669959612976e-05	0.00177044194183154
Merged-chr17-73971538-4	chr17	73971451	73971651	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21355.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	5.08845205443356	5.57571201725401	5.75744602739696	6.12958393672669	5.75829536842249	6.11631356974679	5.72809669305333	6.20697672580023	0.410116341905278	0.214139957489887	0.519788161034397
Merged-chr1-182125204-4	chr1	182125110	182125310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012058, intron 1 of 2)	CpG	473.0	NM_012058	27058.0	Mm.273196	NM_012058	ENSMUSG00000026511	Srp9	9kDa	signal recognition particle 9	protein-coding	7.21962092746649	7.18401934292511	7.2742461357442	7.13335608582587	7.0791986463642	7.11842850127961	7.37560655355048	7.21582113272352	0.000428199604041234	0.998148976866606	0.999131558936114
Merged-chr5-143254357-2	chr5	143254257	143254457	+	560.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_017467, exon 7 of 7)	exon (NM_017467, exon 7 of 7)	15665.0	NM_017467	54201.0	Mm.6666	NM_017467	ENSMUSG00000046658	Zfp316	Emzf1|Mzf3|Znf316	zinc finger protein 316	protein-coding	3.17424164363579	2.89409540234046	3.17470988960909	2.390915290209	3.13116143102089	3.17273548152702	3.04657971655765	3.05686513714306	0.593136801065951	0.407319325256744	0.703609042149807
Merged-chr7-128059303-4	chr7	128059203	128059403	+	918.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-3337.0	NM_001082960	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	4.43080231487326	4.43665398374115	4.19281823885989	4.71626682207405	4.84587448529707	4.41883411928248	4.90914507378986	4.55514784630851	0.504305169511949	0.199264785565799	0.501101497961657
Merged-chr8-125461770-4	chr8	125461674	125461874	+	989.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 10 of 21)	intron (NM_001357372, intron 10 of 21)	31059.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	5.0199683322954	5.26605162278555	5.16636288559673	5.62432861578301	5.24000932002198	5.30935157451798	5.79333569492711	5.5714125554418	0.319868140934033	0.327806525247776	0.639171090552293
Merged-chr17-43077773-4	chr17	43077659	43077859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	61204.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	6.10971972065521	6.28623542723577	6.20668224708511	5.8815759675138	5.96545564515128	5.7527726829941	6.0595387804539	5.86575072882817	-0.310555034939159	0.21748875213934	0.524411649340314
Merged-chr2-102878220-4	chr2	102878111	102878311	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	23454.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.63369650558722	4.62513045706381	4.81156248161234	4.78333407301036	4.47017436006541	4.19801432688957	4.3638207021925	4.59282975709539	-0.672445359332183	0.0664199041587393	0.274700389356906
Merged-chr2-170328750-4	chr2	170328673	170328873	+	925.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27588.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	4.02710250201046	4.18853813705608	3.92252326623772	3.94214074444542	4.28114149963241	4.34185395991361	4.31982890160861	4.07483333292233	0.609585889412206	0.130715671068871	0.402410609652443
Merged-chr15-97786834-4	chr15	97786725	97786925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026353, intron 1 of 2)	intron (NM_026353, intron 1 of 2)	2460.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	7.04445400743594	7.08397671222902	7.27074549222487	6.32654538847854	7.09605232660591	7.2337605319025	6.4244295415111	6.41495102669136	-0.168761848545645	0.57061986109343	0.810180501736883
Merged-chr12-79843304-2	chr12	79843204	79843404	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81429.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	3.26695525138124	3.27269687817035	3.44568019288881	3.45499165841906	3.40510044389355	3.71977760514532	3.48595857165982	3.49811141675113	0.531099229274369	0.296558883438571	0.608507761092495
Merged-chr19-34548155-4	chr19	34548059	34548259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2535.0	NM_008332	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	5.30401764320655	5.58078722449204	4.95840981751035	5.09152698373493	5.5982277979296	5.1768399308875	5.52417874036464	5.36052322657495	0.325105974750987	0.300389862021499	0.612422387893833
Merged-chr10-59283378-4	chr10	59283273	59283473	+	915.895874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-39923.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	5.02455684748786	4.64488280952833	4.63267587087052	4.78431973706988	4.45936947990494	5.03343530810239	4.6521097668697	4.9264559608739	-0.00700576405730647	0.984586591193952	0.994337324592363
Merged-chr15-50695728-4	chr15	50695622	50695822	+	939.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	193327.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	4.95317706348991	5.09854028161801	4.88926913139088	4.7980265874518	4.4922280988749	4.72462807264675	4.29308810720778	4.30866550670853	-1.01330538405146	0.00544755630399752	0.0506201931949839
Merged-chr4-95008393-3	chr4	95008297	95008497	+	713.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29297.0	NM_177239	320713.0	Mm.208868	NM_177239	ENSMUSG00000062627	Mysm1	C130067A03Rik|C530050H10Rik	myb-like, SWIRM and MPN domains 1	protein-coding	3.6274090918986	3.77467569967411	4.10633341876211	3.61430847598364	3.65217392305283	3.85882231549764	3.72379075821306	3.88708991776063	-0.0195960670285547	0.967024117995285	0.988445106003556
Merged-chr17-81636965-4	chr17	81636868	81637068	+	935.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	101419.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	4.85628202603869	4.92570433424359	5.4900761071701	6.15083221287207	5.00194072873367	4.95463416771262	5.3242163897909	5.65773377098031	-0.380222392858374	0.369928553416213	0.674103184854781
Merged-chr11-87421977-4	chr11	87421897	87422097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	RMER15|LTR|ERVL	-5594.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	4.9798856730724	5.02345535404724	4.46114690002533	4.93787151251293	5.29306814586701	5.28950949897442	5.32333195140671	5.2056708471408	0.759664740815878	0.0180097348557559	0.119216221748016
Merged-chr2-167660079-4	chr2	167659920	167660120	+	818.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 1 of 5)	intron (NM_145538, intron 1 of 5)	1524.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	3.55512956386801	3.38031957071055	4.14852888615382	4.05141654240906	3.69884758420476	3.48430486156405	3.4836880054133	3.61041423322157	-0.76756081010391	0.156152847969776	0.442021137941209
Merged-chr15-97964687-4	chr15	97964554	97964754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201359, intron 1 of 7)	intron (NM_201359, intron 1 of 7)	425.0	NM_001252153	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	5.97029499735858	6.19045913778878	5.83654995258332	5.58410757907687	6.00364739879329	5.8082335089228	5.75902137045996	5.80850701046948	-0.0752505796035691	0.782822750228102	0.915388590183887
Merged-chr3-144123648-4	chr3	144123584	144123784	+	994.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78648.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	4.87800541947222	4.88615322880268	4.98663100563478	5.07007023661892	5.27553608258549	4.62524919844334	4.96267187744571	5.36314448954706	0.259585492898087	0.449783130714005	0.734839862538956
Merged-chr14-120279075-4	chr14	120278971	120279171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	3402.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	6.40399497208199	6.2399809844138	6.47175113550016	6.55687032038714	6.1518574893259	6.39744093533938	6.02115104891292	6.29353211333721	-0.318679538452674	0.16627113516567	0.45739103711385
Merged-chr5-140767898-4	chr5	140767811	140768011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 2 of 3)	intron (NM_010302, intron 2 of 3)	43784.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	5.88981189951631	5.65368176076833	6.01696957877815	6.11604411685717	5.65704541365373	5.65398130086019	5.59227553021554	5.64364720313649	-0.498275500280146	0.0577663963698047	0.252294773771411
Merged-chr6-86364602-4	chr6	86364500	86364700	+	922.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1083.0	NM_025591	66488.0	Mm.422972	NM_025591	ENSMUSG00000057497	Fam136a	2010309E21Rik|AW124904|Hyccin	family with sequence similarity 136, member A	protein-coding	4.80983114560695	4.34329312437761	4.69802762732623	4.59456024521046	4.98654520834831	4.90969812140567	4.67603845186264	4.91067278581322	0.550304056163708	0.111373650493963	0.368698618619051
Merged-chr17-31305074-4	chr17	31304960	31305160	+	958.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242427, intron 2 of 19)	intron (NM_001242427, intron 2 of 19)	8836.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	5.17554664310284	5.15736930614519	5.11103933971442	5.34176396732801	5.31917324276105	4.85964286264131	5.38134189525383	5.14064569178967	-0.0202178375365735	0.948088510135491	0.981359015857754
Merged-chr18-83828550-4	chr18	83828420	83828620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	258042.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	5.72105429112566	6.36843015616385	6.46981391356366	6.08497422425824	6.33279225083815	6.19977382550285	6.23405978430968	5.99614784391134	0.0177402745017879	0.94628654114578	0.980861070514278
Merged-chr17-87949228-4	chr17	87949164	87949364	+	778.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25786.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	3.49547576151723	3.51928214373358	3.44558546458778	3.14052334758923	3.17884977901387	3.06065624243606	3.20985217081427	3.33648424594203	-0.743654490001938	0.186105892771636	0.484014101364226
Merged-chr7-105412042-1	chr7	105411942	105412142	+	598.0	f0_c57.idr	Intergenic	Intergenic	7474.0	NM_001033317	233649.0	Mm.99556	NM_001033317	ENSMUSG00000030897	Cnga4	-	cyclic nucleotide gated channel alpha 4	protein-coding	3.70977830327649	3.79829297972875	3.65432994143367	3.8050339220274	4.08432876288704	3.82846367073344	3.94106705852366	3.70826954614053	0.450696615045235	0.317889083020658	0.629770576423708
Merged-chr1-184478185-4	chr1	184478097	184478297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79494.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	7.49123853723953	7.57161277205326	7.44453279971563	7.72387259048481	7.563745401598	7.66019385276587	7.6469347201403	7.49673879342753	0.0253557369788435	0.884557900894559	0.956624037971431
Merged-chr8-126583215-3	chr8	126583090	126583290	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10246.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	4.15993031926402	4.03503147094182	3.6195259918139	3.554338526551	3.62232238765161	3.4904994948434	3.29497209164464	3.72501515149969	-0.975115711449468	0.069197553640594	0.281259289092271
Merged-chr9-21015361-4	chr9	21015288	21015488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010493)	promoter-TSS (NM_010493)	-552.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	7.11898711784323	7.48423804121061	7.2592271285443	7.4203758976716	7.41190816952585	7.51077727340202	7.47010343435579	7.37925391002498	0.140768868895744	0.440616005906821	0.727974715297377
Merged-chr9-31198803-4	chr9	31198715	31198915	+	928.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357698, intron 1 of 17)	intron (NM_001357698, intron 1 of 17)	13033.0	NM_001357698	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	4.13629515774837	4.29081002893374	4.13688232786233	4.28470065427621	4.47413059053902	4.4492464477115	4.46285263183778	4.23007645640652	0.45216327591718	0.236567305383782	0.546577661329488
Merged-chr5-121385666-4	chr5	121385591	121385791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163470)	promoter-TSS (NM_001163470)	-76.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	7.59751764564813	7.61860709239258	7.2048838643102	7.07769830064476	7.44935201318771	7.75013540947124	7.42824990060644	7.33148670215433	0.144956763530271	0.497569574632148	0.767090702736496
Merged-chr2-31162250-3	chr2	31162152	31162352	+	887.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178760, intron 1 of 17)	intron (NM_178760, intron 1 of 17)	9936.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	3.42840979337046	3.29717503002407	3.26583394503563	3.3590111719801	3.09712605096015	3.04683636248892	3.46387878407335	3.26413733045734	-0.420444758295968	0.445609408507547	0.73158879225369
Merged-chr4-155250490-1	chr4	155250390	155250590	+	786.0	f1_c57bl6.idr	non-coding (NR_033802, exon 1 of 3)	non-coding (NR_033802, exon 1 of 3)	524.0	NR_033802	67513.0	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding	3.02764359793171	2.87566858027154	2.89103521943066	2.91321528159072	3.37948561942266	3.38046999452801	3.14030863515795	3.41699943657849	1.59988941593686	0.0042867789141996	0.0423436908595356
Merged-chr3-107097568-4	chr3	107097486	107097686	+	967.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3981.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	5.11764787028952	4.64647890393523	4.58272811169553	5.17112591391128	4.88970149612341	4.71613465407377	4.76488559125427	4.78428143719912	-0.258543390937118	0.473013231848511	0.751004143563305
Merged-chr10-78090242-4	chr10	78090152	78090352	+	908.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20884.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	4.68051544291642	4.36942120838993	4.60279057556719	4.66475632482107	4.7609488431	4.46379085575253	4.58153815927253	5.01009747648334	0.290490413267633	0.425199327229482	0.716745286615087
Merged-chr17-24851605-4	chr17	24851501	24851701	+	965.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159626, intron 1 of 8)	intron (NM_001159626, intron 1 of 8)	934.0	NM_001159626	14651.0	Mm.43784	NM_024284	ENSMUSG00000024158	Hagh	BC019817|Glo-2|Glo2|Rsp29	hydroxyacyl glutathione hydrolase	protein-coding	6.04949105264039	6.00293311140502	6.20158037916197	6.12916828007257	6.22581165727843	5.49209866061411	5.53968910646742	5.23193855694849	-0.635274262655031	0.0443400339481123	0.214735383811362
Merged-chr9-21134816-3	chr9	21134716	21134916	+	931.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-3541.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	3.29398958387333	3.62390308178749	3.09941681146897	3.475901213312	3.31145580411831	3.34415536348521	3.55074508081004	3.46224300041129	0.0800208588735264	0.882722547984371	0.955814918609989
Merged-chr8-120369118-4	chr8	120369028	120369228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119738.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	5.38401414006421	5.88123523911818	5.72305077226072	5.70727103366936	5.76180188321314	5.87255845455479	5.64393383444383	5.71899942453323	0.0982050664135797	0.710991589108929	0.884240356833917
Merged-chr3-109123233-5	chr3	109123125	109123325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172685)	promoter-TSS (NM_172685)	76.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	4.74753733952535	4.74697361844868	4.96814807627004	4.96922326358004	4.92336974266136	4.99922071929323	4.7653030754217	5.12188228351818	0.172503039729563	0.596944902721326	0.825000496540423
Merged-chr9-13577879-2	chr9	13577779	13577979	+	874.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42110.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	3.07220767201401	2.97183619678465	3.29755922782736	2.9232146092304	3.0746204863607	3.11961131268528	3.12081199636147	3.24305073679515	0.300424452609085	0.597799642961774	0.825587520108189
Merged-chr1-131526594-4	chr1	131526473	131526673	+	994.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 1 of 22)	CpG	788.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	5.13229064683917	4.65679424889934	4.79964929189822	4.55368068329001	4.79493265765888	4.63487029421194	5.04791776730218	5.24139908991084	0.319942136102718	0.38007374619478	0.682560090334256
Merged-chr14-55392612-3	chr14	55392510	55392710	+	844.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86148.0	NM_001037938	28200.0	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding	3.50767060184104	3.99296535357865	3.70810068576094	3.81833884898335	3.17298268511028	3.09773166357179	3.12670596702641	3.20409280896338	-2.32318099817416	8.14259143284868e-05	0.00170665935099746
Merged-chr4-133493962-4	chr4	133493883	133494083	+	941.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081156, intron 1 of 1)	intron (NM_001081156, intron 1 of 1)	4567.0	NM_001081156	69539.0	Mm.151594	NM_001081156	ENSMUSG00000056596	Trnp1	2300002D11Rik|Trnp	TMF1-regulated nuclear protein 1	protein-coding	5.18150721925512	5.32361883500553	4.7012815637099	4.67007375241771	5.01701853004836	4.95786827755622	4.75962217467875	4.56699652605301	-0.301731626906686	0.419082121405657	0.712251159515261
Merged-chr6-145139998-4	chr6	145139863	145140063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008511, intron 3 of 18)	intron (NM_008511, intron 3 of 18)	-5512.0	NM_001361633	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	6.31182969062167	5.97937771494674	6.25889457854338	6.4271363874027	6.21026130530763	5.9759657479696	5.86909773296696	6.2170647272576	-0.275619775435582	0.26562653743728	0.577313837051198
Merged-chr3-144562149-3	chr3	144562059	144562259	+	757.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355234, intron 1 of 6)	L1MA8|LINE|L1	8057.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	3.17742322735009	3.02394353692261	3.46279219888252	3.44929108043213	3.26144424422241	3.35214993055009	3.34315431692605	3.51076895581423	0.243062929230967	0.660218959495328	0.858756378815452
Merged-chr7-27473521-7	chr7	27473404	27473604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133210)	promoter-TSS (NM_133210)	-336.0	NM_133210	170742.0	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	7.26436885323679	7.37471113245079	7.73250315729892	7.15481704458968	7.15151730391025	7.51669998818585	7.22933055163669	7.49771631767806	-0.0517443665298685	0.807223814699827	0.925716696309193
Merged-chr13-55432509-4	chr13	55432389	55432589	+	990.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-5685.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	5.16231548874018	4.9799931761334	4.7832318671156	4.66635949956323	5.02095187451694	5.17727106768505	5.10756087380731	4.89529383205268	0.3077994005923	0.350480763661762	0.658055137870761
Merged-chr19-55827968-5	chr19	55827862	55828062	+	863.1199949999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-67359.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.69301517856543	3.80846208452733	3.93297596351498	3.69190987086811	3.77423181926589	3.44546063206072	3.67876758118858	3.69146176958355	-0.365657428116437	0.441494605726084	0.72851318019698
Merged-chr8-13531170-4	chr8	13531063	13531263	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31298.0	NM_025601	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	6.24305023634833	5.37459366235756	6.03724907410775	6.25985088071756	5.09099049857701	5.21575399296761	5.00573239181474	5.41484805892546	-1.43922733918893	9.74080514638623e-06	0.000268632611202877
Merged-chr11-4803581-3	chr11	4803494	4803694	+	933.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010898, intron 7 of 15)	intron (NM_010898, intron 7 of 15)	29541.0	NM_001252253	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	3.38669524816991	3.10436492176075	3.61062908836343	3.64547869922566	3.45801050606895	3.77958742858756	3.59554684817725	3.60851989640499	0.478305467560539	0.372267800927634	0.676099595682082
Merged-chr6-42325412-4	chr6	42325309	42325509	+	880.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113327)	promoter-TSS (NM_001113327)	-769.0	NM_001113327	76156.0	Mm.234314	NM_029528	ENSMUSG00000029861	Fam131b	6330503C03Rik|6530406I18Rik|AV277466	family with sequence similarity 131, member B	protein-coding	4.17899016239724	3.75912322473263	3.62703232735851	4.09145044093706	4.04231171709497	4.02914400659729	3.94049858192484	3.95489656553936	0.13837120414049	0.760656633377994	0.906276631301466
Merged-chr14-22101741-2	chr14	22101641	22101841	+	974.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 2 of 6)	intron (NM_028275, intron 2 of 6)	82029.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	3.11303245918782	3.42312562411817	3.11337352832159	2.95378235271224	3.44243936162459	3.41899196568084	3.60104885747403	3.56821495916468	1.27527203428769	0.0184896522971253	0.121498796238652
Merged-chr4-142077584-4	chr4	142077470	142077670	+	911.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-6728.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	4.3679974625426	4.66578379617518	4.32446514831241	4.23222619853314	4.67530378935102	4.35862603771995	4.43223561517495	4.02015590177981	0.00110340420733798	0.997869689446428	0.999062742638019
Merged-chr5-115516806-4	chr5	115516710	115516910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	10134.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	7.46344641270382	7.53863785459819	7.70495616167377	7.58256816231712	7.30606072325434	7.34491683694364	7.5617939377865	7.23208513520477	-0.279442680419675	0.120233422253247	0.383810790826571
Merged-chr4-150217292-4	chr4	150217209	150217409	+	984.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-16174.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	4.85848069225068	5.06516083856929	5.07310000216732	5.10713693482001	4.86214120834575	4.95693231191769	5.17218656625765	5.25239347851405	0.0518364741544564	0.870076338390668	0.951206667234585
Merged-chr17-34398834-4	chr17	34398740	34398940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001177)	promoter-TSS (NM_001001177)	20.0	NM_001163855	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	6.2503411958903	6.43964019001795	5.81121957358888	5.70952278959735	6.800501341908	6.78295767110597	6.60287864581315	6.39471278239426	0.862582215919085	0.00120894390415294	0.0156538206998463
Merged-chr11-99024259-4	chr11	99024123	99024323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011623)	promoter-TSS (NM_011623)	-34.0	NM_011623	21973.0	Mm.4237	NM_011623	ENSMUSG00000020914	Top2a	Top-2	topoisomerase (DNA) II alpha	protein-coding	6.36644917300506	6.60745292667942	6.330316555679	6.05977576912805	6.67915853143055	6.97323474468305	6.11617116961795	6.59675758671081	0.408121125881053	0.122147655716698	0.387327089801111
Merged-chr12-9030148-4	chr12	9030069	9030269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029321, exon 1 of 3)	exon (NM_029321, exon 1 of 3)	172.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	7.99232591750737	8.12933871576413	7.94470333948766	8.09884640560051	8.02142977411271	8.21811207464731	8.07914123844523	7.96756591534983	0.0319148502948593	0.842146691350402	0.940110307562683
Merged-chr12-54791645-3	chr12	54791555	54791755	+	996.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026998, intron 2 of 13)	intron (NM_026998, intron 2 of 13)	4007.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	4.51060124507585	4.68422209406996	4.62468387497506	4.68734672019326	4.10140150262112	3.98255125203416	4.18194557295223	4.54725397959344	-0.978625511610634	0.01387380750808	0.0993739071293334
Merged-chr19-16874635-3	chr19	16874554	16874754	+	741.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008023)	promoter-TSS (NM_008023)	-824.0	NM_008023	14240.0	Mm.7971	NM_008023	ENSMUSG00000056829	Foxb2	Fkh4	forkhead box B2	protein-coding	3.92807435513811	3.85190843070687	4.36636423663878	3.9016341624736	3.68556952550057	3.66228257474281	3.32856795924748	3.9729850202738	-0.991942803671762	0.0536319877262515	0.241749810294906
Merged-chr8-125518514-4	chr8	125518422	125518622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 2 of 21)	intron (NM_001357372, intron 2 of 21)	-25689.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	5.20630901253937	5.18647641213555	5.03732598651765	5.35072985303321	5.41151825639129	5.0626577457531	5.38518467436063	5.35331731687222	0.188395986487333	0.527642899578248	0.784498766534655
Merged-chr10-86881707-4	chr10	86881627	86881827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 44 of 68)	MTE2a|LTR|ERVL-MaLR	102722.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	5.91720711374223	5.94272874789992	6.02766060798206	6.43770461913289	5.80431672561518	5.72957360739678	6.09687813836651	5.71674890850537	-0.432430281710532	0.111620531929004	0.369193208279488
Merged-chr2-144368947-4	chr2	144368878	144369078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164813)	promoter-TSS (NM_001164813)	-5.0	NM_001164813	100048644.0	Mm.227925	NM_001164813	ENSMUSG00000098387	Pet117	Gm20571	PET117 homolog	protein-coding	6.96552055849719	6.66357700255179	7.03901381193039	6.84366153660266	6.60631318781385	6.89779696263809	6.74538673192425	6.9741459037155	-0.104688742090733	0.618876624980177	0.836120703985271
Merged-chr7-118279711-4	chr7	118279625	118279825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35818.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	5.82759101803805	5.92482232228588	5.40166225990029	5.83595885062379	6.0184030244803	6.11903802335974	5.97808982266451	6.1803541725897	0.479387979433423	0.0608769540259915	0.2608028074037
Merged-chr16-30733920-1	chr16	30733820	30734020	+	747.0	f0_c57.idr	Intergenic	Intergenic	134197.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	3.17945685400064	3.21594457082557	2.8342149900906	2.48238872598446	3.66813087349268	3.5239102014469	3.22640996311361	3.1781441327108	1.70171642165469	0.014738816866559	0.103532443081496
Merged-chr2-91065774-4	chr2	91065699	91065899	+	973.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290765, intron 3 of 9)	intron (NM_001290765, intron 3 of 9)	4516.0	NM_026721	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	4.21992122930923	4.36661919945887	4.26480824333742	4.20908839729617	4.47761430370119	4.09660025484903	3.78587236608374	4.30482672176918	-0.150625594754023	0.726652597265907	0.891197084976652
Merged-chr10-80939413-1	chr10	80939313	80939513	+	565.0	f0_balb.idr	Intergenic	Intergenic	9322.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	3.88784891703811	3.47058900180675	3.33621501222618	3.01945432928125	3.31564986326222	3.73726717331554	3.49709288539742	3.39546755640678	0.103377190304661	0.858409500164412	0.946576014812915
Merged-chr18-34409431-4	chr18	34409334	34409534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163004)	promoter-TSS (NM_001163004)	11.0	NM_016927	53871.0	Mm.445792	NM_016927	ENSMUSG00000014503	Pkd2l2	TRPP5	polycystic kidney disease 2-like 2	protein-coding	6.80681063197577	6.56878493455338	6.30171257637532	6.57691199916111	6.16173942097303	6.20728445826126	6.23125361821875	6.19901988910439	-0.562908634903427	0.0127963679619996	0.0940942846247076
Merged-chr2-166730361-4	chr2	166730272	166730472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16540.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	7.42898105988985	7.62147636332608	7.54277857597938	7.38409099049831	7.54303910371533	7.51596071390273	7.59199890062443	7.52859060382616	0.0702276758916493	0.681995624508062	0.869682098720609
Merged-chr13-116949704-4	chr13	116949612	116949812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	75804.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	6.45971839058514	6.50149778607973	6.38886092262433	6.63719068234472	6.90241348171666	6.63761717606047	6.83953893940613	6.30801402542663	0.275649455701247	0.231349603738025	0.540831366410565
Merged-chr14-8173151-4	chr14	8173073	8173273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024221)	promoter-TSS (NM_024221)	-181.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	9.57906876136501	9.78368066925783	9.86212606338876	9.84737995053437	9.69355876316142	9.7534617303978	9.80753677194655	9.67140584641752	-0.0519570340438476	0.70802051320433	0.882703520735834
Merged-chr6-87535216-7	chr6	87535113	87535313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1954.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	6.5363044534048	6.44557222296124	6.73893678799335	6.22904975785655	6.02492604298116	6.31359628515465	6.20710418716591	6.45218561973807	-0.35250255996017	0.147951227628506	0.429416915322518
Merged-chr3-95994682-4	chr3	95994570	95994770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023320, intron 2 of 5)	intron (NM_023320, intron 2 of 5)	1169.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	5.07643857529275	4.91246109490103	5.29835999182111	5.34001279302025	5.13117192704969	5.14620061328905	5.18264764176564	5.40537971144079	0.0716310095156652	0.817189817928222	0.929714396168039
Merged-chr15-78185075-3	chr15	78184939	78185139	+	911.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-10931.0	NM_025931	67042.0	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	4.02327500608708	4.61540799861585	4.16723958163131	4.19757278485139	4.05224827691375	3.98487574329531	4.14882350169254	3.86071672103149	-0.654949592503201	0.133046495155634	0.406163856522683
Merged-chr6-115284316-4	chr6	115284212	115284412	+	895.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32107.0	NM_001356406	110595.0	Mm.255607	NM_080639	ENSMUSG00000030317	Timp4	Timp-4	tissue inhibitor of metalloproteinase 4	protein-coding	5.11202109597784	5.09140946261319	5.46607231330037	5.13210560049775	4.58552062505906	4.97078325377455	4.73028775553175	4.86821897369192	-0.827679016559759	0.012529274462424	0.0925940801640076
Merged-chr6-122658482-4	chr6	122658398	122658598	+	902.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32074.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	3.80589001713313	3.66071972206214	3.80643720575869	3.60326677169705	3.97342633207179	3.63981186209829	3.73915864417077	4.19557017833056	0.564893528820331	0.224913202814405	0.53334646858495
Merged-chr1-88631673-4	chr1	88631567	88631767	+	962.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70524.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	4.36102119563896	4.14197747667177	4.66802730123443	4.48811155422368	4.43357816901602	4.19662632904331	4.42512031595513	4.2693557259754	-0.209356087372587	0.594666395083222	0.823531813292476
Merged-chr18-50126296-4	chr18	50126176	50126376	+	989.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1925.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	5.40542325968722	5.23504129598953	5.46284321233159	5.82812132715103	5.67915771912766	5.01852832608151	5.32072409289687	5.37339883109636	-0.236470255158235	0.466400412105596	0.746420287776482
Merged-chr9-50593161-4	chr9	50593064	50593264	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10685.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	4.78176542970408	4.94610229678294	4.44777237796249	4.82505190493172	4.65095226941766	4.95458641125002	4.86482948175212	4.58071955518175	-0.0088313837126052	0.980062668317067	0.992782655212549
Merged-chr17-86977388-4	chr17	86977297	86977497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	HAL1ME|LINE|L1	14286.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	6.59145634023716	6.59252045297303	6.56249989825235	6.44874113082628	6.15245950529058	6.38998311376605	5.86475626363522	6.20866734216028	-0.569614997276289	0.0132515057348388	0.0962674960910482
Merged-chr10-22148895-5	chr10	22148855	22149055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001254744, exon 1 of 2)	exon (NM_001254744, exon 1 of 2)	315.0	NM_001254744	319887.0	Mm.177746	NM_001254744	ENSMUSG00000097327	E030030I06Rik	-	RIKEN cDNA E030030I06 gene	protein-coding	4.97260538646021	4.80341386724912	4.76923226467719	4.45316792707689	4.67827938615816	4.56511533053803	4.70940778610954	4.90565176571025	-0.0542823323936519	0.88002899236666	0.955065788432447
Merged-chr11-3203218-8	chr11	3203095	3203295	+	830.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001166549, exon 1 of 18)	5' UTR (NM_001166549, exon 1 of 18)	176.0	NM_001166549	74203.0	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	3.43184304946875	3.54638831771536	3.24347334585302	3.20455323682214	3.61350216013683	3.60686383246043	3.47600282254483	3.91307047921149	1.00275523075363	0.0491335662344204	0.229164413275657
Merged-chr1-80785311-4	chr1	80785215	80785415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26762.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	6.634201990053	6.49168789581777	6.60568933982208	6.48339417331921	6.55521393066433	6.20322612742231	6.1903482597418	6.31560816651783	-0.312805999132315	0.161776228242015	0.450760346423824
Merged-chr3-121651912-3	chr3	121651798	121651998	+	869.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5445.0	NR_036458	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	3.11934908993082	3.29740198543279	3.11972471686111	3.20676804200944	3.29355892695262	3.10094194738822	3.04824159077092	3.11820556739154	-0.155977405557938	0.779509832011157	0.913990879529571
Merged-chr16-21595873-4	chr16	21595786	21595986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 44 of 46)	intron (NM_001081366, intron 44 of 46)	98779.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	6.93494751406979	7.20117764353384	7.36886420428938	7.26684584247129	6.42946317206292	6.68847532424868	6.62885850154501	6.75093057184398	-0.819391688829045	8.13145613504244e-05	0.00170482744104915
Merged-chr1-136008100-4	chr1	136007997	136008197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160145)	promoter-TSS (NM_001160145)	-122.0	NM_001160145	66241.0	Mm.41773	NM_025439	ENSMUSG00000026411	Tmem9	1500015G18Rik|AW545782	transmembrane protein 9	protein-coding	5.91022682383973	6.25420404463258	5.73732356357054	6.20630383051029	5.9703821860589	5.91489724642444	6.03318950517411	5.97482458739258	-0.135141874211832	0.594369834826921	0.823411261518897
Merged-chr12-99627337-3	chr12	99627229	99627429	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045288, intron 1 of 1)	intron (NR_045288, intron 1 of 1)	645.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	3.14230131365481	2.92664538682604	2.89693092715211	3.07445416637244	2.85556800994448	3.07184624329407	3.28577791672063	3.08387186200612	0.253789046859618	0.668201174445965	0.862850737330936
Merged-chr2-5811676-4	chr2	5811624	5811824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133837, intron 6 of 12)	intron (NM_133837, intron 6 of 12)	-33310.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	5.24836810054266	4.64031628343221	5.16087868942509	5.24594970439162	4.79685619168677	4.90785152235909	5.0732397086325	5.15730355023094	-0.223830366653316	0.512390697065574	0.775817701566463
Merged-chr2-60892379-4	chr2	60892274	60892474	+	995.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-10936.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	4.8610220827413	5.35203199864348	5.18817406236502	5.16496336661437	5.15666290124037	5.26422577307408	5.71764238894892	4.97660954507257	0.27522326008972	0.408324594370544	0.704294465750557
Merged-chr1-191183475-4	chr1	191183351	191183551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007498)	promoter-TSS (NM_007498)	-118.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	8.77226744015023	9.00011831293951	8.59120116471196	8.67526437817914	8.87934861477886	8.97620729462921	8.94620120108432	8.85210892799741	0.18073451128782	0.248313354429837	0.559414345781337
Merged-chr5-30849944-4	chr5	30849849	30850049	+	939.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-11858.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	4.81506348191912	4.63231612625119	4.85046037640967	4.70808794430327	4.71211203240079	4.43695012712112	4.1817436067202	5.14821104681716	-0.162891790265494	0.684723497362173	0.870914954532591
Merged-chr14-46912696-4	chr14	46912590	46912790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	29725.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	6.67950989170702	6.59894967119047	6.30295615246388	6.49003995971895	6.21756378055641	6.673334107788	6.17165678632135	6.39070853789242	-0.227804143269369	0.330795652924871	0.642094846510006
Merged-chr8-104251319-3	chr8	104251228	104251428	+	993.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037841, intron 1 of 2)	intron (NM_001037841, intron 1 of 2)	467.0	NM_001286383	75458.0	Mm.269219	NM_029295	ENSMUSG00000054400	Cklf	1700001C14Rik|1810018M11Rik|A730028G07Rik|C32|CKLF1|CKLF3|CKLF4|CKLF5|Cklf2|Cklf6|HSPC224|UCK-1	chemokine-like factor	protein-coding	4.65618221980808	4.49057304245853	5.2196970719673	4.88405081186257	4.45614734074793	4.5271768293798	4.71087236106942	4.39301770419722	-0.67809253831608	0.0757062558984288	0.297192565000787
Merged-chr3-108226659-4	chr3	108226560	108226760	+	919.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008596)	promoter-TSS (NM_008596)	-61.0	NM_008596	17306.0	Mm.316885	NM_008596	ENSMUSG00000027887	Sypl2	AI552439|Mg29	synaptophysin-like 2	protein-coding	4.15322808765746	4.55641734989113	4.34015018265584	4.37340951904877	4.45357250981768	4.4682728332834	4.36290009423844	3.99223837827038	-0.071147984042986	0.859399035366103	0.946775482716667
Merged-chr14-76504410-4	chr14	76504290	76504490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009366)	promoter-TSS (NM_009366)	-120.0	NM_009366	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	6.40594973606769	6.73403047881251	6.6369264904793	6.84301355709867	6.41750232524087	6.28242377278052	6.35627427697547	6.5548989592823	-0.39386059127874	0.0760045114135895	0.297838946738032
Merged-chr4-149683047-4	chr4	149682955	149683155	+	752.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 1 of 23)	MTB_Mm|LTR|ERVL-MaLR	-6966.0	NM_001164051	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	3.90011773324425	3.96301015723359	3.53168276984881	3.3903891084302	4.07308145875134	3.45144957415498	3.92774287133845	3.58929673335943	0.226609051560966	0.670634422453167	0.8642024686037
Merged-chr18-11718363-4	chr18	11718269	11718469	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 8 of 18)	intron (NM_001081223, intron 8 of 18)	61020.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	4.89738492317664	5.42334078961881	5.52269579462398	5.52099136686599	5.08999612689955	5.37527255432032	5.44204434417014	5.6884574157964	0.0611184748081346	0.850366721134741	0.943601360079346
Merged-chr1-186932121-3	chr1	186932034	186932234	+	725.527771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51B_Mm|LTR|ERVK?	-35282.0	NM_033077	110957.0	Mm.108054	NM_033077	ENSMUSG00000039224	D1Pas1	Pl10	DNA segment, Chr 1, Pasteur Institute 1	protein-coding	2.21060815101627	2.16805134661972	2.21076619047706	2.07637824872623	2.96905539917777	2.82477404769575	2.63914889138914	2.8241555363388	4.42809191265676	1.3741022096945e-06	4.67079870695505e-05
Merged-chr15-97884409-4	chr15	97884297	97884497	+	903.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009504, intron 3 of 9)	intron (NM_009504, intron 3 of 9)	23899.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	4.55845691193845	4.63791918496324	4.51645789582113	4.22733738350888	4.70671260396613	4.64901292996785	4.98838540059617	4.82069375340762	0.691729941956597	0.0541897552516362	0.24307868597531
Merged-chr2-166728435-4	chr2	166728341	166728541	+	902.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-14609.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.50521942688991	4.68797361419646	4.5903184876813	4.0778888596894	4.92751895625928	4.84238140456901	4.48541589145428	4.84498663695704	0.695003123568743	0.0709794312439204	0.285711979670362
Merged-chr9-100546128-5	chr9	100545995	100546195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010878)	promoter-TSS (NM_010878)	39.0	NM_010878	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	7.79729285897244	7.90268696143387	8.4303967107917	7.99092473320118	8.09226661601571	8.21078685445465	8.04700485945432	8.17862922256776	0.104242851655918	0.58225154598971	0.816501953640427
Merged-chr17-26514865-4	chr17	26514760	26514960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6388.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	5.68977520019731	5.28744932132927	5.26298163784444	5.18407675647183	5.28313617617322	5.43833985874442	5.4135909362794	5.38056191932703	0.0335670379947348	0.909463347877784	0.966320459266825
Merged-chr4-131873473-4	chr4	131873338	131873538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020587)	promoter-TSS (NM_020587)	-201.0	NM_020587	57317.0	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	7.52220095071241	7.58916836926303	7.27193167169051	7.11902368473862	7.65132843094918	7.94779171566803	7.66393620159466	7.35293279494859	0.381166407289822	0.0687694024313568	0.280191030089384
Merged-chr11-55099014-6	chr11	55098912	55099112	+	778.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010299, intron 1 of 3)	B1_Mm|SINE|Alu	1027.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	3.31486415880491	3.03854591760841	2.73607670046729	2.99910020709684	3.02092389739438	3.32042576032648	3.19394529603222	3.36428234398566	0.745301269280032	0.219017570764583	0.526421681280888
Merged-chr6-49073860-4	chr6	49073794	49073994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029353)	promoter-TSS (NM_029353)	99.0	NM_029353	75593.0	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	6.92735171296618	7.06539560468748	7.71684982164219	7.20673677652184	6.7482045676166	6.96346974688473	6.97196601259886	7.28601110009058	-0.356533727368264	0.140643015944927	0.417117884664332
Merged-chr4-142103485-2	chr4	142103385	142103585	+	843.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144531, exon 14 of 14)	3' UTR (NM_144531, exon 14 of 14)	-19181.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	3.27611264617361	3.29678911253634	3.1595470599664	3.04744418305033	3.12211898145916	3.14113321986224	3.20729871782022	3.48043294044341	0.196336382400004	0.722784204390355	0.88928524667289
Merged-chr4-46489244-4	chr4	46489107	46489307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053179)	promoter-TSS (NM_053179)	-122.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	7.74224261403313	7.95730902310742	7.92525111412329	7.83082722157631	8.02996542250543	7.99226791329531	7.93535544902886	7.64532262989085	0.0601472434798328	0.728241712075559	0.891839868274082
Merged-chr3-138519418-4	chr3	138519329	138519529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6762.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	6.67648572708699	6.46832414209595	6.25068408458703	6.48186744416285	6.55168495566104	6.38734453248859	6.62911140009384	6.70151576913684	0.138889181402459	0.52542861450371	0.783252235625498
Merged-chr19-3378789-4	chr19	3378681	3378881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 15 of 18)	intron (NM_013495, intron 15 of 18)	-10076.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	6.71703503124983	6.93796213129904	7.01558352042697	6.8257730811362	6.96389852863558	7.02499924984437	6.99208960134078	6.58528081947895	0.0396113600006383	0.848905976528161	0.942921233783246
Merged-chr4-72199975-7	chr4	72199940	72200140	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001285529, exon 1 of 20)	5' UTR (NM_001285529, exon 1 of 20)	853.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	5.10870837793943	4.81272619278135	5.80451579333461	5.4915007025947	5.08992309464254	5.54099510159113	5.31054419528135	5.47422503346514	-0.00238058246615963	0.994605216134508	0.998093408906001
Merged-chr17-56858422-3	chr17	56858352	56858552	+	898.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039114, intron 6 of 14)	intron (NM_001039114, intron 6 of 14)	15995.0	NM_001039114	328845.0	Mm.179421	NM_001039114	ENSMUSG00000024207	Acsbg2	Bgr	acyl-CoA synthetase bubblegum family member 2	protein-coding	3.29815122475219	3.55939337372357	3.36529011021299	3.36715531403205	3.46530307801404	3.97515492765807	3.53385644343975	4.12979428993778	1.24251533513018	0.0178179935004086	0.118418950454303
Merged-chr1-173437736-3	chr1	173437633	173437833	+	777.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 2 of 8)	MIRb|SINE|MIR	17129.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	3.7634572324755	3.57670752148997	3.90681081195211	3.77601486886367	3.65838668349212	3.59838281782225	3.74851043861813	3.90441705898896	-0.086512486188719	0.852499277390758	0.944562676072226
Merged-chr2-59244547-4	chr2	59244448	59244648	+	828.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	83698.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	3.88436345093828	3.97969942086113	3.98175111053931	4.23539303960649	3.87637568912754	3.59081084252714	3.91769995934803	3.8826853259296	-0.597084107799609	0.189039493564416	0.487836866980549
Merged-chr13-94296583-3	chr13	94296488	94296688	+	763.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10757.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	4.19434014496841	4.0932259261053	4.01482915635293	4.02672027389388	3.89619038485073	4.18569023513764	3.89865725030261	4.01245812894332	-0.223022076522389	0.595125453205504	0.823780378703952
Merged-chr5-99251533-4	chr5	99251422	99251622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	1405.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.74283035664076	7.9448465272982	7.85883446163463	7.83166401700996	7.59551295732957	7.78643304439573	7.85675237121066	7.6561297363923	-0.16155688188298	0.33572865934135	0.645934307404376
Merged-chr1-171658678-4	chr1	171658562	171658762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5625.0	NM_144539	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	6.11246256525032	5.85962534722139	5.88039665714049	6.27313619335782	5.71984435960849	5.90920352778547	5.65035567101915	5.96600570838056	-0.391081874093327	0.133537412443031	0.406860242524004
Merged-chr15-73060278-4	chr15	73060184	73060384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164641, intron 1 of 17)	intron (NM_001164641, intron 1 of 17)	920.0	NM_001164641	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	6.00298936276696	5.27235124113488	5.63956506961096	5.62049404298692	5.61424256226565	5.58739819412399	5.66241901751647	6.16575246072037	0.205537862642446	0.498995261834497	0.768056044938103
Merged-chr11-77361170-3	chr11	77361059	77361259	+	821.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	12879.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	3.73668959435398	3.2664815775872	3.64580331708429	3.43391677650715	3.39972911247695	3.49774826754972	3.18545658764038	3.32172958259043	-0.585728711798108	0.275992565716174	0.58804666193048
Merged-chr5-65309093-4	chr5	65308968	65309168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011258, intron 4 of 24)	MTE2b|LTR|ERVL-MaLR	26571.0	NM_011258	19687.0	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	6.21136169215503	6.22764732135471	6.32457461751573	6.44439872807231	6.15520192603034	5.77916562585342	6.54840960561995	6.20801561223728	-0.164990271736767	0.515765332960748	0.777739987602761
Merged-chr2-126167361-2	chr2	126167261	126167461	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15220.0	NM_026981	69185.0	Mm.29019	NM_026981	ENSMUSG00000023330	Dtwd1	1810033A06Rik	DTW domain containing 1	protein-coding	3.34199724749543	3.3256091909476	3.34242444313944	3.40397738067105	3.30141134206581	3.33290184372318	3.49019821945537	3.50272638989513	0.172691490898832	0.734308920831913	0.894973967498754
Merged-chr11-34048192-1	chr11	34048092	34048292	+	826.0	f0_balb.idr	intron (NM_010696, intron 1 of 20)	intron (NM_010696, intron 1 of 20)	1264.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	3.21691175119848	4.23630276673782	3.89895559974504	3.00950141304119	3.35569357019659	3.93211290095011	3.58559615765012	3.42037686602814	-0.296093293311769	0.646850263147875	0.851434183012844
Merged-chr3-84513026-3	chr3	84512914	84513114	+	768.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293801, intron 6 of 7)	intron (NM_001293801, intron 6 of 7)	-32575.0	NM_001033301	229474.0	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	3.52386002278573	3.71293991646764	3.87354551840134	3.88690408735974	3.58701431371328	3.31311243401123	3.5666554669876	3.57851886423441	-0.773420953326651	0.122741768816041	0.388294949446977
Merged-chr14-51128972-4	chr14	51128872	51129072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030098)	promoter-TSS (NM_030098)	-65.0	NM_030098	78416.0	Mm.103835	NM_030098	ENSMUSG00000021880	Rnase6	9530043P15Rik|BB119466	ribonuclease, RNase A family, 6	protein-coding	7.07219744286497	6.81721512835327	6.9028599392272	7.2013510372012	6.67105111105483	6.47374849788462	6.91880955035813	6.66963335113201	-0.452623740621288	0.0352541851418327	0.18617379555576
Merged-chr5-129787213-4	chr5	129787042	129787242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009838)	promoter-TSS (NM_009838)	111.0	NM_133900	100678.0	Mm.271784	NM_133900	ENSMUSG00000029446	Psph	AI480570|PSP|PSPase	phosphoserine phosphatase	protein-coding	7.44710818444267	7.51729044471254	7.81467762187468	7.23348837247013	7.32198687005198	7.71870592420814	7.4588217937156	7.606191383235	0.0254727187074848	0.901138434391799	0.963342914941175
Merged-chr11-6366097-4	chr11	6365988	6366188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29037.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	7.10549166302909	7.14965205481734	6.27699204186086	6.49006577107098	6.94955317905185	6.99142829563575	6.60500802550946	6.25142464470572	-0.101607232909949	0.725971937173565	0.890989643736271
Merged-chr9-59680162-4	chr9	59680086	59680286	+	852.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011099)	TTS (NM_011099)	23818.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	4.43855975743613	4.30918624880233	4.19211900293139	3.91374758611215	4.12312953486434	4.31902650997393	4.30167657946093	3.7643998630289	-0.184476593978946	0.678492648837116	0.868112820688421
Merged-chr7-80535127-4	chr7	80534967	80535167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007550)	promoter-TSS (NM_007550)	52.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	7.49198659943861	7.51709381659259	7.42725891330094	7.35134835922669	7.47441359038022	7.37128381179665	7.55311617565657	7.27870590812625	-0.0230911146541947	0.895983681091351	0.960994089571403
Merged-chr2-167240576-4	chr2	167240476	167240676	+	788.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008968)	promoter-TSS (NM_008968)	-39.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	3.65217006599213	3.56899950208796	3.80954151797047	3.55883770461141	3.62333346375614	3.879503304649	3.79325933998662	3.99000366696732	0.537175362932027	0.246360398215146	0.55762669839908
Merged-chr7-46987761-3	chr7	46987654	46987854	+	987.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_033461)	TTS (NR_033461)	11122.0	NR_033461	629141.0	Mm.229259	NR_033461	ENSMUSG00000056509	Gm9999	-	predicted gene 9999	ncRNA	3.93294774609309	3.53660154654336	4.19945303849614	4.21781476692896	3.67282063801752	4.24248670351813	3.70566455676704	3.82883850261923	-0.346607622330781	0.492215435349615	0.763365053005715
Merged-chr6-56797032-4	chr6	56796942	56797142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001362209, exon 1 of 4)	5' UTR (NM_001362209, exon 1 of 4)	171.0	NM_001362211	210973.0	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	5.63929735571964	5.30380243354992	5.56335865058686	5.39914340857052	5.2973443333849	5.68375017199028	5.50876056000321	5.75473733921457	0.152874816225303	0.592233931170993	0.822019239498327
Merged-chr1-86406495-4	chr1	86406393	86406593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17132.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	6.48345369687186	6.23834729192295	6.48459988573142	6.81156194083634	6.2959939421474	6.19129330769391	6.3669823190839	6.34137063333124	-0.349657342271442	0.1407702044135	0.41732231461186
Merged-chr2-122164494-4	chr2	122164395	122164595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080510, intron 1 of 6)	intron (NM_080510, intron 1 of 6)	3795.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	6.65595400106477	6.3704439832408	6.51613119004364	6.72028501683164	6.84622423898742	6.45742495652929	6.49923009712893	6.29508487491361	-0.0371192453133208	0.874360083992282	0.952845802230489
Merged-chr3-89308304-4	chr3	89308187	89308387	+	749.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14592.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	3.81057737394639	4.35778782811637	3.62716123536607	4.04665071241785	4.00661889167767	4.14674423396863	4.14279225692366	4.28382309496998	0.384906036569272	0.403305054547332	0.700700507615324
Merged-chr7-59163092-3	chr7	59162996	59163196	+	886.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-65654.0	NM_001033962	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	4.03042562751155	3.94530109440287	4.07565014760484	3.73826966072935	4.17293777818218	3.9562078093054	3.92009834620378	3.53886878994424	-0.0515840686427835	0.912977012797165	0.96737778834115
Merged-chr14-30200513-4	chr14	30200417	30200617	+	974.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	152969.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	4.83298566072695	4.79087624706979	4.29259550729785	4.56971311492939	4.64149014810758	4.70311836726658	4.7052067793167	4.72450713305035	0.120075642989096	0.736972177326952	0.896163707353808
Merged-chr13-23574376-4	chr13	23574313	23574513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178188)	promoter-TSS (NM_178188)	32.0	NM_178188	319165.0	Mm.390553	NM_178188	ENSMUSG00000071478	Hist1h2ad	-	histone cluster 1, H2ad	protein-coding	7.87888360415604	8.11991100226907	8.02982025541933	7.84241089223655	8.2661033022471	8.20742842598054	8.21752029259325	8.20536822411279	0.330236286601049	0.0383491889837858	0.196378195876035
Merged-chr6-85369629-4	chr6	85369519	85369719	+	971.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003955, intron 1 of 5)	intron (NM_001003955, intron 1 of 5)	5015.0	NM_177466	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	5.34166026841349	5.01541615914246	5.34259159455537	5.25588600017235	4.6802495389659	4.90422502480709	4.97645915764201	5.31132966979827	-0.504332400270608	0.127160851472612	0.396685902921902
Merged-chr8-91176365-3	chr8	91176260	91176460	+	996.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40866.0	NM_010241	14339.0	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	3.54355793283426	3.28351444145269	3.23861736287918	2.76121324185234	4.8760013801998	4.24558388084454	4.64354775126935	4.43479546211428	4.46990172555198	2.25134173952425e-15	3.87073076515933e-13
Merged-chr16-36709014-3	chr16	36708914	36709114	+	981.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 2 of 7)	intron (NM_001285788, intron 2 of 7)	15036.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	3.95709088758599	4.17191047632817	3.68939764224132	4.09906411544965	4.04238242611148	4.02936089324574	3.73357497912915	3.90600809114315	-0.174760468897152	0.69879815990943	0.878505428649175
Merged-chr19-40631458-4	chr19	40631374	40631574	+	924.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	19108.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	4.93083318694487	4.59031920558336	4.35857499859601	4.08907315343934	4.55026318768207	4.3938583776715	4.46692506416324	4.16125706565353	-0.25846771711073	0.545711141935195	0.795980613958413
Merged-chr5-118376633-4	chr5	118376539	118376739	+	979.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131412.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	4.91071303112618	5.59615650102587	4.72301357301781	5.03710873670365	4.85132545533276	4.4833846127724	4.70091953734176	4.59228595610856	-0.889333572036871	0.0203742321183581	0.129610999012657
Merged-chr6-87038399-4	chr6	87038301	87038501	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4445.0	NM_013528	14583.0	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	4.65122171327594	4.88094366599745	4.39780943016138	4.85149981251753	5.84568298452281	5.04610983961566	5.27238493625617	5.57300477114392	1.41634034617301	8.42232417572152e-05	0.00175855855823902
Merged-chr10-93911560-3	chr10	93911452	93911652	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20350.0	NM_019648	56307.0	Mm.289329	NM_019648	ENSMUSG00000036112	Metap2	4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2	methionine aminopeptidase 2	protein-coding	3.46180291399466	4.06412337015446	3.62323958390575	4.00022231281522	2.91680321389772	3.2566561413475	3.13220114439882	3.27743784336239	-2.56422319843995	4.24834611198033e-05	0.000981476883819045
Merged-chr8-22125023-4	chr8	22124947	22125147	+	850.9249880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347318)	promoter-TSS (NM_001347318)	20.0	NM_177898	330721.0	Mm.113940	NM_177898	ENSMUSG00000037738	Nek5	6530411J22|BB049667	NIMA (never in mitosis gene a)-related expressed kinase 5	protein-coding	4.49471337176302	4.33466022941412	5.18636498219549	4.46160737373561	4.13591183961508	4.14385149963788	4.25836794895875	4.07021355290823	-1.18896225355165	0.00638763925670871	0.0568403268725178
Merged-chr3-79559313-4	chr3	79559213	79559413	+	955.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	8366.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	4.17931795047258	4.8137418888253	4.95901639796049	4.85549123924911	4.51523138435034	4.69883097795597	4.70105947278637	4.47684392915138	-0.306169944685133	0.428277192866052	0.719325810566156
Merged-chr3-22143438-4	chr3	22143301	22143501	+	860.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	66749.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.03112036344913	3.99043722818163	3.88260359202722	3.80425474791948	4.15438708351917	4.10677486452248	3.81386200402694	4.16258604011737	0.402062104669425	0.346018846324744	0.654337817814796
Merged-chr5-3516908-4	chr5	3516779	3516979	+	989.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 6 of 7)	intron (NM_009873, intron 6 of 7)	-26954.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	4.9929585015253	5.27138301095941	4.60095638404922	4.88452123583061	5.01153505014992	5.09799255304958	5.12699474331168	4.64306732183951	0.0470374322170122	0.893323766445302	0.96013087495735
Merged-chr7-80530924-1	chr7	80530824	80531024	+	571.0	f0_balb.idr	intron (NM_001042527, intron 1 of 21)	intron (NM_001042527, intron 1 of 21)	4074.0	NM_007550	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	3.56137322638935	3.2865895470444	3.19572219830116	3.25093790660422	3.39325210479129	3.10880471302145	3.24287658929881	3.06727459549657	-0.406251583009249	0.470323472012044	0.749078941154353
Merged-chr7-141466246-4	chr7	141466149	141466349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001025103, exon 10 of 10)	3' UTR (NM_001025103, exon 10 of 10)	-1113.0	NM_009842	12476.0	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	6.23968282212878	6.00926747395934	5.60970241883963	5.95255625760336	5.73303868631404	5.9510778271175	6.40395243623538	5.79509315803037	0.036560985514775	0.898347649931933	0.962134928897157
Merged-chr8-122454568-4	chr8	122454432	122454632	+	853.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013914, exon 3 of 3)	3' UTR (NM_013914, exon 3 of 3)	-3210.0	NR_015497	319574.0	Mm.271989	NR_015497	ENSMUSG00000110656	Gm20735	-	predicted gene, 20735	ncRNA	3.35545343862743	3.18458277854024	3.18649544301505	3.19571983398242	3.27246279493097	3.16872685414405	3.28917101325069	3.3540325026211	0.166387513305117	0.753262221287972	0.902798885097597
Merged-chr17-59189751-4	chr17	59189660	59189860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-176438.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	5.6066503183519	6.00350639731578	5.75458280870113	5.7531739294951	5.17998803699315	5.61786276292907	5.57917814400512	4.98183916234765	-0.737222559292644	0.0144125184269664	0.101969593828798
Merged-chr9-104140523-4	chr9	104140418	104140618	+	859.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13875.0	NM_145700	252837.0	Mm.269254	NM_145700	ENSMUSG00000079355	Ackr4	A630091E18Rik|CCBP2|CCR11|CCX-CKR|CCX-CKR1|Ccrl1|Cmkbrl1|PPR1|VSHK1	atypical chemokine receptor 4	protein-coding	4.02715614830745	4.06917206901657	5.04541480416287	4.79425557930458	4.27260674657034	4.26571749529949	4.35835492465418	4.37549233965173	-0.560910747831056	0.225902575139518	0.534540927024594
Merged-chr17-43557315-4	chr17	43557214	43557414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11137.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	7.33706368293962	7.78149945360379	7.6564946856041	7.20723420369007	7.15417004094875	7.74197544279963	7.45679071041242	6.86184042991485	-0.228044081756925	0.354111265516508	0.660862238285252
Merged-chr19-36538710-3	chr19	36538608	36538808	+	757.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15931.0	NM_001163471	226098.0	Mm.61107	NM_172637	ENSMUSG00000041180	Hectd2	4921524L07|A630025O09Rik|AW212605	HECT domain E3 ubiquitin protein ligase 2	protein-coding	3.85849505992858	3.661533057263	3.76085219974439	3.52435740919558	3.71018138661997	3.93144542948426	3.79466759832947	3.65251184285343	0.2377250731761	0.609165575181776	0.83089280248568
Merged-chr18-6335472-3	chr18	6335355	6335555	+	914.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-93931.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	3.56504374014153	3.3900786676658	3.6709798908272	3.66826936977492	3.73041736470343	3.68142177743656	3.60488698438118	3.56359843453174	0.20814739326429	0.664322919369091	0.860955946242955
Merged-chr15-8633773-4	chr15	8633655	8633855	+	901.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_148938)	TTS (NM_148938)	77052.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	3.57249815337584	3.55549867124641	4.0721532537916	3.62329889472067	3.74198343728084	4.06476447228564	3.83010469200547	3.84428400389562	0.450754802653032	0.342850873267122	0.6516462545027
Merged-chr6-148444867-3	chr6	148444732	148444932	+	968.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347518)	promoter-TSS (NM_001347518)	-480.0	NM_001347518	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	3.83416573248915	3.59469760566751	4.02348997940075	4.24726795167697	3.72142555792654	3.7316527192256	3.53982498221566	4.06397282528064	-0.515101614042411	0.30452100470355	0.617066911687048
Merged-chr12-111944599-4	chr12	111944507	111944707	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029464)	promoter-TSS (NR_029464)	-125.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	5.39943645050243	5.07186492368072	5.00427042874913	4.78996283191826	4.89028920982381	5.43444829229684	5.26462618290334	5.03611098978949	0.178193488319113	0.599926607924125	0.826630462424748
Merged-chr8-13164538-3	chr8	13164432	13164632	+	851.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010684, intron 1 of 8)	intron (NM_010684, intron 1 of 8)	5371.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	3.64061316961721	3.31365182699713	3.32032168501946	3.36883681504023	3.36633201946337	3.37074661412134	3.47669219322226	3.59084849191842	0.13351378550017	0.794045259801519	0.920330677187069
Merged-chr2-174415770-4	chr2	174415663	174415863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020580)	promoter-TSS (NM_020580)	-41.0	NM_020580	57314.0	Mm.271709	NM_020580	ENSMUSG00000016253	Nelfcd	2410003I03Rik|C77797|Th1|Th1l	negative elongation factor complex member C/D, Th1l	protein-coding	7.48639996661966	7.87556409941251	6.75292046934094	7.06376698589597	7.77856407988704	7.71941371807884	7.53116000018665	7.36599446804622	0.32633040472035	0.211290544945977	0.515897698226869
Merged-chr1-153981039-3	chr1	153980914	153981114	+	963.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81085.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	4.25123710491175	4.22352877099906	4.25189470971037	4.60783582427552	4.0380094517209	4.18925266006462	4.09695412270386	3.90292678944628	-0.766090258777351	0.067321318875904	0.27683253065211
Merged-chr2-11333084-4	chr2	11332964	11333164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6425.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	5.42436663344459	5.14754063485264	5.4532799155457	5.26537916798423	5.37983240761463	5.38679673398862	5.31098293146316	5.78650615678358	0.277506840434573	0.343685633827424	0.652283741246884
Merged-chr1-136126377-4	chr1	136126273	136126473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	4810.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	5.4903865862234	5.03231602780874	5.40165604518899	5.92035093575654	5.72294744874895	5.69589802768057	6.04886854109416	5.54390922236369	0.407280110236778	0.211430747210857	0.516045302462765
Merged-chr9-53594929-2	chr9	53594829	53595029	+	839.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_144784, intron 3 of 11)	B3|SINE|B2	15421.0	NM_144784	110446.0	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	3.25911355041487	3.19505658164079	2.84020318344357	2.88095110163505	3.25532003603857	3.54749708929106	3.51462921724248	3.66710293930364	1.6625186301165	0.00387001013243455	0.0390506735492711
Merged-chr4-101296977-4	chr4	101296892	101297092	+	926.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-31710.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	4.52265345521606	4.22022356256221	4.08517820693666	4.42829374594191	4.51299537889118	4.26202023238141	3.9612722206364	4.48283784160693	0.000429730598780306	0.999178981205027	0.999578096120658
Merged-chr14-78733585-3	chr14	78733445	78733645	+	865.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081336)	promoter-TSS (NM_001081336)	-816.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	3.30093071760152	3.0294851381887	3.30137358965704	3.29796401390683	3.30090352163684	3.29649921908692	3.28856765547282	3.18421524594959	0.110389082320516	0.837535195941163	0.938358606299218
Merged-chr5-110230991-4	chr5	110230876	110231076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253814)	promoter-TSS (NM_001253814)	-28.0	NM_001253814	71782.0	Mm.288442	NM_027922	ENSMUSG00000029501	Ankle2	1110001J12Rik|AI661024|D5Ertd585e	ankyrin repeat and LEM domain containing 2	protein-coding	7.78972909467357	7.78369759388709	7.415469381317	7.66558334963544	7.65864292245911	7.72787635953004	7.76069509200833	7.46022957704523	-0.0219935618035931	0.903459689157045	0.964287824952031
Merged-chr2-13237792-3	chr2	13237705	13237905	+	740.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009105, intron 3 of 8)	intron (NM_009105, intron 3 of 8)	33610.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	3.18396591758368	3.31802302225241	3.24295848255852	3.3576550590862	3.38030873662671	3.02595902638444	3.1732838363383	3.29722587726596	-0.183288364639798	0.739725023670876	0.897502598777303
Merged-chr2-84267014-3	chr2	84266934	84267134	+	839.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	158232.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	3.7739596024573	3.57414894285294	3.4944849163353	3.3463637027838	4.68521000524533	4.29665058134156	4.96412539489654	4.82590170764193	3.08105185330391	4.51172247706765e-12	4.33972829993511e-10
Merged-chr7-34230324-4	chr7	34230200	34230400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008155)	promoter-TSS (NM_008155)	36.0	NM_008155	14751.0	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	7.79847466193108	7.7525987932738	7.7379575720526	7.9279234249945	7.5015214817717	7.47397185756405	7.7916420028145	7.56332134325732	-0.295173416972406	0.090104268151308	0.327769066820483
Merged-chr9-106223241-4	chr9	106223150	106223350	+	940.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031178, intron 1 of 1)	intron (NM_031178, intron 1 of 1)	652.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	4.90810846282354	4.90795792639682	4.9450767072466	4.86221277857906	5.40560033179551	4.75784580464944	5.0867101048521	5.07676027837669	0.418661404355914	0.201666735986893	0.504156139969769
Merged-chr19-5956882-4	chr19	5956779	5956979	+	765.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 4 of 17)	intron (NM_001164057, intron 4 of 17)	7327.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	4.27392900755924	4.25649655557704	3.85635210702477	3.96395102794818	3.99651316084572	3.86209423412032	3.84122128910019	4.23166514315441	-0.270127848541812	0.542544887309809	0.793895630500676
Merged-chr17-79569815-4	chr17	79569718	79569918	+	837.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45082.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	3.31314470383345	3.41443925405997	3.10875279842151	3.63816740005562	3.63814957793825	3.71457224001774	3.67941391789761	3.54350582076928	0.79026537418198	0.144856677725085	0.424036712956412
Merged-chr4-11126730-2	chr4	11126630	11126830	+	976.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151526, exon 3 of 3)	non-coding (NR_151526, exon 3 of 3)	2772.0	NR_151526	100503518.0	Mm.102270	NR_151526	ENSMUSG00000086765	Gm11827	-	predicted gene 11827	ncRNA	3.27060165701537	3.5302780733246	3.90429769373895	3.22534115736747	3.50043492315473	3.69168341491845	3.50396520280195	3.72343857443868	0.333195203406484	0.534536253881554	0.789286995820758
Merged-chr18-31761027-4	chr18	31760930	31761130	+	977.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001242430, exon 1 of 8)	5' UTR (NM_001242430, exon 1 of 8)	414.0	NM_001242430	225339.0	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	5.05895981844684	5.48873393913598	5.05979740268197	5.11555120123147	5.66441662055415	5.37857891415252	5.7539528588183	5.49588489016166	0.692982010302334	0.0188003084467035	0.12275820153453
Merged-chr3-132227833-4	chr3	132227734	132227934	+	804.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	142542.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	4.19243449885886	4.34585344559612	4.87757109299509	4.5415792469985	4.27551529825458	4.32047911063738	4.17540021023077	4.5016527550604	-0.448676611388634	0.26844316801571	0.580131084080006
Merged-chr17-27976510-1	chr17	27976410	27976610	+	1000.0	f0_balb.idr	intron (NM_181413, intron 2 of 24)	intron (NM_181413, intron 2 of 24)	67204.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	4.11309824601172	4.29543270549121	4.22835369014822	4.07701489042596	3.10469769088628	3.27690276463957	3.22643965280578	3.38001315405439	-3.52259096982988	3.19627214781693e-08	1.52894795167649e-06
Merged-chr18-88924507-3	chr18	88924388	88924588	+	972.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30281.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	4.41498864537493	3.98674562167762	4.56295583771902	4.99160700180354	3.85506873689959	3.76258980340082	3.87824860556513	4.05525797520479	-1.68945744714722	0.000446335036833328	0.00703491620610263
Merged-chr11-55022748-1	chr11	55022648	55022848	+	599.0	f0_balb.idr	intron (NR_138556, intron 1 of 24)	intron (NR_138556, intron 1 of 24)	10723.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	3.45637941937431	3.22670933916931	3.24052850353789	3.23840384433389	2.99549383085938	3.2291349320478	2.97278849217916	3.59544941811486	-0.261370556159573	0.657155494408129	0.857123881679102
Merged-chr8-27022562-4	chr8	27022455	27022655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1244.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	5.73591420366753	5.51239069759309	5.43686656940786	5.90795164344149	6.0361380661563	5.7576428962974	5.58100520525477	5.52208732376666	0.123167629850843	0.671694766467161	0.864905117611895
Merged-chr6-128788694-2	chr6	128788594	128788794	+	718.916626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008527)	promoter-TSS (NM_008527)	-53.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	2.15861295605547	2.11321267691568	2.15878037110414	1.87433439401224	2.66118394149865	2.73434625310059	2.60660981134134	3.23099247510628	6.79812757592229	1.90272046752464e-10	1.39335123619276e-08
Merged-chr4-59804955-4	chr4	59804859	59805059	+	807.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172468)	promoter-TSS (NM_172468)	-691.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	3.73650790049056	3.70448908314198	3.99502751272535	4.09052195627289	4.03310999473297	3.79704294910209	4.02316217006838	4.12541261864266	0.264473550191014	0.557604741689888	0.802786163202762
Merged-chr9-21136104-4	chr9	21135996	21136196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4821.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	6.74588386906485	7.21285858238929	5.96918077284063	5.47972090029532	7.11855098107068	6.83818272726059	6.58170792302507	6.10915505830017	0.253146227206321	0.673410198377603	0.865721645311197
Merged-chr5-151187168-4	chr5	151187075	151187275	+	923.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153382, intron 1 of 13)	intron (NR_153382, intron 1 of 13)	3018.0	NM_001163493	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	4.38721543601144	4.12167954582804	4.83232030599423	4.84649872527928	4.65842239548113	4.65767546757511	4.70302018277452	5.01834209281371	0.36406989905024	0.364534158588755	0.669279814395716
Merged-chr7-100988239-3	chr7	100988132	100988332	+	888.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23766.0	NM_001302347	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	3.81415011653178	4.18576705799322	3.86858577125274	3.83023941837166	3.98384555509807	4.27729127617527	3.95329545549173	3.86640033768071	0.257765970240583	0.559254289629593	0.803673813331301
Merged-chr14-118706335-4	chr14	118706225	118706425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033336)	promoter-TSS (NM_001033336)	-106.0	NM_001033336	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	7.28099849028908	7.19617048676972	7.66927639620933	7.40538830074104	6.64854822414112	7.13167613623384	6.85014926923828	7.03943562671123	-0.654223344880984	0.00216507591701909	0.0248601288429588
Merged-chr12-16805626-2	chr12	16805526	16805726	+	962.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-4740.0	NM_015764	268527.0	Mm.428062	NM_015764	ENSMUSG00000036523	Greb1	5730583K22Rik|9130004E13|AF180470|AU023194|mKIAA0575	gene regulated by estrogen in breast cancer protein	protein-coding	2.91224202891542	3.05765810757559	2.97296420986002	2.6857334944437	2.78708538483363	3.02182599678816	2.90211317719686	2.8479816169379	-0.0769561020530583	0.901223219680696	0.963342914941175
Merged-chr4-132747815-4	chr4	132747710	132747910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133888, intron 1 of 7)	intron (NM_133888, intron 1 of 7)	9361.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	7.55657447384752	7.38919227489904	7.21725204580683	7.17006079621003	7.42368830706892	7.30182726334016	7.41432555405393	6.99285496992832	-0.0491330058625018	0.807468662617315	0.925758841834255
Merged-chr14-66147767-4	chr14	66147677	66147877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144803, intron 5 of 6)	intron (NM_144803, intron 5 of 6)	6817.0	NM_144803	110902.0	Mm.57350	NM_144803	ENSMUSG00000022041	Chrna2	Acra-2|Acra2|BC011490	cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)	protein-coding	6.33201673092911	6.63591646466348	6.31439518133114	6.24118805492853	6.68316804436601	6.66571891313294	6.26315685852919	6.21183882224507	0.140156751100307	0.564005917440582	0.806558370465832
Merged-chr11-86201264-4	chr11	86201160	86201360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_130958)	promoter-TSS (NR_130958)	-67.0	NM_178309	237911.0	Mm.186143	NM_178309	ENSMUSG00000034329	Brip1	3110009N10Rik|8030460J03Rik|Bach1|FACJ|Fancj|OF	BRCA1 interacting protein C-terminal helicase 1	protein-coding	7.74195400291481	7.66432023852136	7.03501133011349	7.20941154359104	7.67884664751871	7.73166153152671	7.58600443070064	7.31632463283192	0.194242901061439	0.38533643672599	0.686726426145025
Merged-chr18-69403655-3	chr18	69403550	69403750	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	57490.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	4.83311469297166	5.11642833380167	4.99477630359539	5.55475895846178	3.94381910807751	3.92992870158858	4.10636034339595	4.17817331938305	-2.65249156791494	7.60448386099478e-10	5.01184774760877e-08
Merged-chr12-57196869-3	chr12	57196771	57196971	+	931.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172577, intron 1 of 9)	CpG	601.0	NM_172577	217593.0	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding	3.34317078315335	3.84147559922188	3.77548152526577	3.9415550603197	3.12037811799466	3.58192754740385	3.39379552762136	3.40429897951918	-1.25305852481541	0.0235095820042464	0.142348129630491
Merged-chr2-164084196-4	chr2	164084089	164084289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021420, intron 3 of 10)	intron (NM_021420, intron 3 of 10)	10011.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	6.54393161705031	6.06509684449309	5.93664175414337	6.48947742279039	6.3670486210126	6.04049390603445	6.35184121953245	6.27279558412193	-0.0391113201055865	0.878831198107525	0.954708519232108
Merged-chr19-32210624-4	chr19	32210533	32210733	+	939.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	380.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	4.92427177308072	4.98257497059913	4.42925888085529	4.2994913461176	4.59456129165254	4.73678638887772	4.65999162079888	4.51627471066625	-0.118289782770042	0.762812268308896	0.907011913026374
Merged-chr17-65763721-3	chr17	65763618	65763818	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	B2_Mm1a|SINE|B2	9034.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	3.57504263711166	3.44101747789965	3.65696321267528	2.73526211778412	5.69418038274535	5.21796912185364	5.87743853352543	5.49952415400109	6.54554049017856	1.18742244969045e-28	1.20742203637881e-25
Merged-chr13-113623062-4	chr13	113622885	113623085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4421.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	6.39608050298261	6.25347317367089	6.51583477375562	6.38906299568312	6.44048662528996	6.32002374598486	6.61931205816017	6.63385836625043	0.176885494441125	0.416672847360179	0.71063511686235
Merged-chr2-118729336-3	chr2	118729245	118729445	+	640.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290790)	promoter-TSS (NM_001290790)	-907.0	NM_001290790	18796.0	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	3.2344555720625	3.47286213296871	3.29176309321871	3.13579300907223	3.10311183697482	3.08772629022934	3.27890804495918	3.28996526420454	-0.352650760488422	0.524012945215574	0.782704938068323
Merged-chr11-76847057-4	chr11	76846979	76847179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007754)	promoter-TSS (NM_007754)	-71.0	NM_007754	12874.0	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	6.65770193298785	6.36929808767861	5.8584115720906	6.05709492689827	6.22365465728213	6.50556333268996	6.35006722515856	6.00105812848815	0.0239569034391025	0.929935469013436	0.974727857709636
Merged-chr8-33654153-1	chr8	33654053	33654253	+	573.0	f0_balb.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	915.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	3.6896631904283	3.6360670130721	3.74052170135598	3.30401022227895	3.64543664752697	3.80943797177544	3.56921798377603	3.68804211484749	0.284207772021502	0.564167429249382	0.806599371831898
Merged-chr15-5185609-6	chr15	5185513	5185713	+	856.538879	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026213)	promoter-TSS (NM_026213)	53.0	NM_001355621	67515.0	Mm.254979	NM_026213	ENSMUSG00000022151	Ttc33	2410099M07Rik|2900001O04Rik|AI507072|AW538342|Osrf	tetratricopeptide repeat domain 33	protein-coding	3.67826623419022	3.79493377195445	4.29114867936056	3.93669763880215	3.8082636021792	3.91481713630505	3.98052606744459	4.12944448033922	0.0439490632043326	0.923630350101622	0.971826408223083
Merged-chr15-59721757-4	chr15	59721669	59721869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73115.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	6.84812306952912	6.85589812202047	7.04323733818988	7.04597390139702	6.43995580890563	6.18558635793097	6.55407200251496	6.3535868258418	-0.806243712353316	0.000137923003324181	0.00266249134611067
Merged-chr4-138091979-3	chr4	138091880	138092080	+	696.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172703, intron 5 of 34)	intron (NM_172703, intron 5 of 34)	46538.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	3.24518540569093	3.3518010788659	2.95604784296321	3.04407769277536	3.79512029517721	3.75977120293669	3.57396163004135	3.63690421710708	1.87255983329284	0.000406655661516747	0.00653098901875012
Merged-chr15-40047400-3	chr15	40047296	40047496	+	848.68335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155348, intron 1 of 2)	MLT1A1|LTR|ERVL-MaLR	2208.0	NR_155348	102636079.0	Mm.421381	NR_155348	ENSMUSG00000115142	Gm33251	-	predicted gene, 33251	ncRNA	3.62018476352345	3.63892901356998	3.78172595131937	4.10145787826634	3.67459421906002	3.67828738019489	3.76619428897391	3.87651409975825	-0.204956488540233	0.672134557616055	0.865054980138381
Merged-chr1-131021685-4	chr1	131021588	131021788	+	869.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010548, intron 3 of 4)	intron (NM_010548, intron 3 of 4)	1843.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	4.55446450969344	4.20409335695009	4.03740767315866	3.8948260941623	4.85490075823168	4.47571223035079	4.86881958755766	4.47212616416217	1.16661582944667	0.00427146347512904	0.0422217051376489
Merged-chr11-50213641-4	chr11	50213541	50213741	+	924.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2821.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	4.79011166357504	4.51162029235305	4.26219763885163	4.37701735201589	4.51234420490302	4.92610057341912	4.38518839056269	4.40210050764661	0.173929639490071	0.656802474069381	0.856896207738269
Merged-chr16-36724359-4	chr16	36724257	36724457	+	898.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 7 of 7)	intron (NM_001285788, intron 7 of 7)	30379.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	4.25171648113567	4.14313436778102	4.12378548212414	4.1410925583263	4.03808200714524	3.88181509151062	4.23277528519044	3.69897365383988	-0.481811026459801	0.267195105182022	0.578889139572816
Merged-chr15-64052237-4	chr15	64052120	64052320	+	962.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	7544.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.87675649686757	4.68583424315217	4.36847232848623	4.44203814396326	4.86298506087018	4.7215440990379	4.56767987459974	4.41292259747385	0.130447700650148	0.728391940324715	0.89196275508999
Merged-chr14-103469296-2	chr14	103469201	103469401	+	755.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-44040.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	4.35846725898292	4.20750532330723	3.99714868274853	4.06709367432102	4.33848183660436	4.06636573210484	4.17252548535752	4.14266445917455	0.0851909691644909	0.83443381347061	0.936888323107459
Merged-chr17-26504538-7	chr17	26504412	26504612	+	998.5476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3960.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	5.28899621484189	5.10821096245135	4.46732011481933	4.89394747573181	4.72799447436339	4.6940098661963	4.3493703131042	4.83742599089626	-0.628248745701746	0.101454901244755	0.349490825767668
Merged-chr8-122160330-1	chr8	122160230	122160430	+	892.0	f0_balb.idr	Intergenic	Intergenic	-121811.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	2.86362248538399	2.81231898806177	3.13079613551219	3.16328098167765	2.38608889445418	2.46956367125785	2.59470768171402	2.67127310292669	-2.71617080451143	0.000738446175413562	0.0105609524452003
Merged-chr1-171451189-4	chr1	171451061	171451261	+	861.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172647, intron 1 of 9)	intron (NM_172647, intron 1 of 9)	13600.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	3.96855553534882	3.94526965036505	3.80702449753034	3.88978919885169	4.24920569753035	4.45035723008289	4.00185765784001	4.0645555617118	0.785064775556675	0.0613744589376852	0.2621248417572
Merged-chr3-108958124-4	chr3	108958025	108958225	+	990.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001078646, intron 6 of 7)	intron (NM_001078646, intron 6 of 7)	17568.0	NM_001078646	66715.0	Mm.158124	NM_025723	ENSMUSG00000045662	Henmt1	4921515J06Rik|Hen1|mHEN1	HEN1 methyltransferase homolog 1 (Arabidopsis)	protein-coding	4.92147413201848	5.23088354733242	5.16168677317113	5.25289722039306	5.33006604234853	4.89923847104584	5.22573541049888	4.71626783562986	-0.144282929539239	0.666162397749424	0.861911413823008
Merged-chr7-114890293-4	chr7	114890196	114890396	+	981.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58354.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	5.67061098402463	5.20211775533067	5.16555392996888	5.44592169879406	5.45379621826566	4.88101158544978	4.92861977325483	5.09477172109505	-0.478312457086808	0.152272292115144	0.436230760704494
Merged-chr10-59735280-1	chr10	59735180	59735380	+	933.0	f0_balb.idr	intron (NM_001359267, intron 3 of 11)	RSINE1|SINE|B4	32717.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	4.28490508830418	4.57606172117622	4.2855627796266	4.26583793129726	4.18241174738811	4.21688616662703	4.0212561509099	4.73358651300234	-0.100448612853508	0.811320767541577	0.926950255422823
Merged-chr1-92679014-4	chr1	92678929	92679129	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30188.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	5.29520092944619	5.60489091565985	5.32491220129124	5.48236351348959	4.71240900081044	4.94370925116727	5.08310259193667	4.99915834839442	-0.95862033229665	0.0019808804330374	0.0232231649104982
Merged-chr19-4300445-4	chr19	4300344	4300544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	5778.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	7.89143190271909	7.83730417110871	7.88566427288093	7.90670643453843	7.64119503228414	7.63550712542409	7.64826414820866	7.52076900760877	-0.350577567291992	0.0290328259252935	0.163828122791834
Merged-chr8-116275727-4	chr8	116275640	116275840	+	884.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-229275.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	3.8388814940052	3.54509528427323	4.20723731547599	3.97974502968935	4.17921656398859	4.06491957563509	4.14722877004192	3.47341574782694	0.227072198115867	0.657510021393366	0.857348630564516
Merged-chr2-32288196-4	chr2	32288096	32288296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133852)	promoter-TSS (NM_133852)	-57.0	NM_133852	99412.0	Mm.106376	NM_133852	ENSMUSG00000002546	Golga2	AW555139|GM130|mKIAA4150	golgi autoantigen, golgin subfamily a, 2	protein-coding	8.54474345228663	8.8379698223033	8.37373572983831	8.21861170502819	8.44953169240742	8.77056974889038	8.52549134280459	8.32964766121831	0.0196243563720023	0.919191850063555	0.970285021467879
Merged-chr5-8055855-4	chr5	8055749	8055949	+	816.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080974)	promoter-TSS (NM_001080974)	-693.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	4.44323635252543	3.9428542719542	4.0030321830036	4.67865212282143	4.0016375196479	4.2294263615308	4.08667328308172	4.05221185228246	-0.572563449082008	0.207266079683991	0.511181071672855
Merged-chr4-137367926-4	chr4	137367833	137368033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10174.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	6.84269839558791	6.85068167141962	6.67595272791495	6.57815123299832	6.27806585208589	6.51208810539945	6.58078745449257	6.8776970778798	-0.234892188342003	0.306104635617251	0.618593623499989
Merged-chr17-79662045-4	chr17	79661948	79662148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201361, intron 5 of 10)	intron (NM_201361, intron 5 of 10)	47148.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	6.33526611147684	6.149275262823	6.28162572915839	6.64504515133687	6.07852071283127	6.01925231806685	6.17294397187675	6.48297411235637	-0.275620357625095	0.272788817648273	0.584183037393596
Merged-chr17-84188054-4	chr17	84187959	84188159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001806)	promoter-TSS (NM_001001806)	-112.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	8.31991577261346	8.16497407436639	7.90757927757737	7.93243573385599	8.22127628069139	8.28400998785648	8.1533585428784	7.95320504999626	0.0918080713181693	0.60656564320298	0.829492720591086
Merged-chr7-132686664-4	chr7	132686540	132686740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	75997.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	6.38961212442739	6.40599572930821	6.1425054075082	6.51715391255855	6.356154608153	6.27675851427706	6.11118330937975	6.40337154901632	-0.132718687822759	0.561352586981167	0.80494560024742
Merged-chr5-106574711-4	chr5	106574595	106574795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-116529.0	NM_001005477	104382.0	Mm.271593	NM_001005477	ENSMUSG00000034384	Barhl2	E130309B19Rik|MBH1	BarH like homeobox 2	protein-coding	4.84013147338959	5.02570059225037	4.9465216829819	4.93160031044166	4.90403504562614	4.43420210836662	4.88866326561488	4.94317438561732	-0.248206528460999	0.462756977205626	0.744223296516398
Merged-chr4-150239692-3	chr4	150239566	150239766	+	917.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023119, intron 2 of 11)	PB1D10|SINE|Alu	2342.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	3.48724091808687	3.06605875687467	3.22739219653964	3.3453309258645	3.22581842555504	3.08095077136718	3.15712354887357	3.22571921213103	-0.435904027775414	0.434820361076698	0.724046191013856
Merged-chr8-10831002-4	chr8	10830882	10831082	+	981.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51472.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	4.71784564837381	4.08297176749394	4.43818066211108	4.76330931126058	4.65705838297823	4.65645508445294	4.62272711993309	4.67904602631971	0.246238221215146	0.525858367064701	0.783367294725902
Merged-chr19-60467367-4	chr19	60467283	60467483	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_201615, exon 1 of 1)	exon (NM_201615, exon 1 of 1)	921.0	NM_201615	226278.0	Mm.377241	NM_201615	ENSMUSG00000045052	Prlhr	Gm339|Gpr10|Gr3|Prrpr	prolactin releasing hormone receptor	protein-coding	5.00098971886843	4.93306404694155	4.96574775908903	5.07161185854003	5.09577344162667	5.10489531264692	5.20326405041546	5.46774055053816	0.420006493218256	0.170447308846149	0.463612250997748
Merged-chr16-4212396-4	chr16	4212294	4212494	+	917.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025432, intron 1 of 30)	intron (NM_001025432, intron 1 of 30)	1010.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	4.26346985789173	4.32104078428514	4.11656797537768	4.35795133758073	4.5589643615055	4.18853041784942	4.41741769481182	4.65723298872108	0.459015437646765	0.23587818416942	0.545896142740888
Merged-chr3-146159578-4	chr3	146159466	146159666	+	854.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	ORR1B1|LTR|ERVL-MaLR	9392.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	4.63105486070407	4.7617204235477	4.06804053051234	4.54488353962068	4.64552449697105	4.55581553073717	4.68326902575417	4.55029737952262	0.178097258918788	0.640836219595526	0.848397308185435
Merged-chr8-25841449-2	chr8	25841349	25841549	+	809.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011791)	promoter-TSS (NM_011791)	-662.0	NM_011791	23808.0	Mm.27706	NM_011791	ENSMUSG00000031575	Ash2l	-	ASH2 like histone lysine methyltransferase complex subunit	protein-coding	3.18617677817085	3.12745485555738	3.39874000100004	3.33366417370402	3.12578005934098	3.03962372278492	2.99157816574907	3.18493376336962	-0.703994487908249	0.213711117229394	0.519202846315107
Merged-chr2-72962342-3	chr2	72962230	72962430	+	737.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001018042, intron 4 of 6)	intron (NM_001018042, intron 4 of 6)	16951.0	NM_001098425	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	4.31543579220034	3.93101028113937	4.23129743469956	4.55131418574223	3.87680979000999	4.44439835575716	4.1223544876841	3.82044713982556	-0.511883268064063	0.265759544331645	0.577438760598551
Merged-chr15-90084513-3	chr15	90084400	90084600	+	859.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139811.0	NM_001033441	380959.0	Mm.17853	NM_001033441	ENSMUSG00000075470	Alg10b	AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5	asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)	protein-coding	3.01874291431471	3.1456142305721	3.08419852695135	3.23639794956188	3.17476978656629	3.25670567511061	3.30295958591632	3.3664320277807	0.530833048807629	0.332189451608627	0.643223965616171
Merged-chr5-146248904-4	chr5	146248812	146249012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153599, intron 1 of 12)	MMAR1|DNA|TcMar-Mariner	17662.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	6.26391527155731	5.69347274291691	5.83868255418212	6.07947840848696	5.78482487407273	5.88898274352427	5.92372034095066	6.0143003491484	-0.142339026091288	0.584721989915495	0.817725463637045
Merged-chr7-132793722-3	chr7	132793624	132793824	+	999.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	-6789.0	NM_175268	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	3.98601394044943	4.21955513260147	4.38078822615245	4.81038863530855	3.76338148157774	3.75879539609224	3.7500385103149	3.93207755769072	-1.61398303953269	0.000724487530505879	0.0104094263088167
Merged-chr10-77984844-4	chr10	77984756	77984956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026431, exon 7 of 7)	3' UTR (NM_026431, exon 7 of 7)	6206.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	4.93027733725661	5.00266386330733	4.51245559059494	4.80703614741509	4.96882128681884	5.03288918960928	5.32590628916915	5.15623511715252	0.579266678976081	0.0790260492712979	0.304168883419765
Merged-chr7-114294131-3	chr7	114294032	114294232	+	814.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18016.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	3.58955776113851	3.25960934643034	3.63342322742501	3.59344063161334	2.60264718817512	2.94710400853176	2.82719587661666	2.83366685608619	-3.85554708740672	5.48053987430237e-06	0.000161064966025173
Merged-chr3-116191579-4	chr3	116191466	116191666	+	893.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61878.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	4.08670531179195	4.48501178122519	4.0340473714712	4.28294332582717	4.45948085944591	4.31412276421282	4.60967271106206	4.23263227195913	0.409934893576517	0.307169396174205	0.619358168218558
Merged-chr11-53735783-4	chr11	53735690	53735890	+	937.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14996.0	NM_010558	16191.0	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	4.53751692996744	4.80068826402574	4.49431250693462	4.4077340959563	4.8286713336911	4.7135302789457	4.71531335544336	4.90686742911932	0.503831434346689	0.147326783824399	0.428303101855779
Merged-chr6-128107949-4	chr6	128107846	128108046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	35632.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	5.06609459659042	5.33181394584395	5.32879625701333	5.21949160693372	5.46309462026252	5.20806794826515	5.33136008963813	5.54173019973951	0.281828033376945	0.327790931797505	0.639171090552293
Merged-chr5-104023711-4	chr5	104023608	104023808	+	930.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1912.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	4.5943065297014	4.53228687690942	4.18126751136912	4.415451397155	4.89291115467022	4.80492092596746	4.53401364597294	4.51090541771583	0.57976736586727	0.116700298751342	0.378037162190952
Merged-chr11-31864045-2	chr11	31863945	31864145	+	597.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6895.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	2.92918194761941	3.07320605196836	2.98952636550713	2.8017751193417	2.80381522244856	2.68512273143223	3.08871395703379	2.98793868230522	-0.20806009904535	0.739010019523122	0.897102750030299
Merged-chr1-120057231-4	chr1	120057121	120057321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 12 of 13)	HAL1|LINE|L1	16559.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	6.02330855109743	6.16655641935513	6.61344540793344	6.36791156650343	6.50696695671657	6.5988069610607	6.22713210774574	6.45251645580944	0.207661538651023	0.388148232818707	0.688854325766231
Merged-chr5-63821375-4	chr5	63821265	63821465	+	877.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	8870.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	4.13108183132252	4.13167716256359	4.08259687064608	4.02781775286095	4.24511021868859	4.48009352604076	4.29239020163358	4.39023842561564	0.654635114062268	0.0905464429443626	0.328692638838065
Merged-chr9-56041877-4	chr9	56041780	56041980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011992)	promoter-TSS (NM_011992)	35.0	NM_011992	26611.0	Mm.1782	NM_011992	ENSMUSG00000032320	Rcn2	AA408742|Tcbp49	reticulocalbin 2	protein-coding	7.50681157117564	7.79273020924868	7.57077273914776	7.5025656934528	7.19707541134195	7.49770961176206	7.71169652565013	7.14398425593909	-0.257188982315415	0.208288684910751	0.512541668507999
Merged-chr3-69156642-4	chr3	69156531	69156731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126533, intron 2 of 2)	intron (NR_126533, intron 2 of 2)	25398.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	7.61872307532739	7.83427964397079	7.338180031284	7.72928161766808	7.6797688498244	7.49428466504566	8.19955960789158	7.59727100792291	0.165751843735822	0.448588973946201	0.733856919708496
Merged-chr12-55648303-4	chr12	55648209	55648409	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003719, intron 36 of 39)	intron (NM_001003719, intron 36 of 39)	49392.0	NM_020287	56856.0	Mm.114886	NM_020287	ENSMUSG00000045440	Insm2	Mlt1	insulinoma-associated 2	protein-coding	5.44299246966417	4.85516739795238	5.08378730744437	4.81890261925071	5.46607546689332	5.42011476059244	5.25030783113954	5.27296052864304	0.561323796759698	0.0791974812424185	0.304538728072237
Merged-chr7-98289752-3	chr7	98289648	98289848	+	874.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360615, intron 1 of 10)	B2_Mm2|SINE|B2	19794.0	NM_001360616	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	3.64310141249289	3.7624529486443	4.01302712116064	3.5381897675269	4.21715521447845	4.18337474689447	3.68890793337569	4.09909533768397	0.910155520826485	0.0509038013928905	0.234016771901089
Merged-chr2-91078847-3	chr2	91078735	91078935	+	772.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CGGGGG)n|Simple_repeat|Simple_repeat	-8520.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	3.47636717765768	3.06400400477573	3.22935346018093	3.20227226431934	2.90215493808232	3.16021878128439	2.97714968818021	3.22758784707846	-0.729956540569942	0.215014454506625	0.521004727057943
Merged-chr3-89482494-2	chr3	89482394	89482594	+	713.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22923.0	NM_027348	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	2.8637328675098	2.78902381235156	3.00091272562032	3.0066153250098	3.16144545853176	3.45842827128809	3.2251111000789	3.23669888949838	1.36486595560106	0.019557175182383	0.126035325695504
Merged-chr6-124415930-4	chr6	124415834	124416034	+	919.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175933)	promoter-TSS (NM_175933)	-79.0	NM_001360570	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	4.22052063743497	4.24511693486629	4.31131014616405	4.26341599673436	4.80226371712048	4.08800737291981	4.37525353218524	4.01738919145426	0.279316969276747	0.517621905055763	0.778953152798512
Merged-chr10-69351339-4	chr10	69351234	69351434	+	742.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007659, intron 1 of 7)	MTC|LTR|ERVL-MaLR	1578.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	4.3502048172237	3.87775750166485	4.30953053685355	4.37063227598487	4.12691031211666	4.20439619700225	4.20389283983337	4.30679190210528	-0.0956479716725897	0.816487893717262	0.929363095066699
Merged-chr2-173785096-4	chr2	173784998	173785198	+	895.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019806)	TTS (NM_019806)	47527.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	4.86070379193784	4.48781795154769	4.46698949844281	4.94151357549681	4.31435267888276	4.31400965786428	4.0615239496996	4.37718265316118	-1.02338001177799	0.00985372057034846	0.0780609879217399
Merged-chr17-27935251-4	chr17	27935147	27935347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	MTC|LTR|ERVL-MaLR	25941.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	6.75298494282516	6.88450501999177	6.98576057477985	6.76987008375891	6.39015019744394	6.21133785515725	6.78822216583881	6.55077383676745	-0.497030700095447	0.0256537344610577	0.151071991826228
Merged-chr11-60836674-4	chr11	60836573	60836773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172112, intron 1 of 6)	ORR1C1-int|LTR|ERVL-MaLR	6042.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	6.80646001475058	6.52482990928399	6.37616839741097	6.46312763609872	6.72911905332572	6.69714257350746	6.59996311317507	7.09108263844712	0.351304050714077	0.119767906808879	0.383092609479583
Merged-chr6-48410114-4	chr6	48410002	48410202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362145, intron 9 of 15)	intron (NM_001362145, intron 9 of 15)	14516.0	NM_001362144	77827.0	Mm.107646	NM_133922	ENSMUSG00000042810	Krba1	A930040G15Rik|AI448780	KRAB-A domain containing 1	protein-coding	7.11872795802475	6.93827826577686	7.50485075885943	7.60705571156397	6.90498704584752	6.91347881971296	7.39620438541793	7.26029077253947	-0.264352873172073	0.264767834640371	0.576600386978718
Merged-chr5-8350963-3	chr5	8350862	8351062	+	693.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	17198.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	4.12863601580186	3.6915571174547	4.50814357648029	4.33382742873744	3.75297662668022	4.0627477662754	3.76092479299965	3.77340566219387	-0.97889569058326	0.0420801815271657	0.207871832946223
Merged-chr14-54754764-4	chr14	54754679	54754879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	27107.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	6.76853037350135	6.98617028149902	6.91028839610576	6.660993424673	7.06386248815392	6.88643139085241	7.13719027553261	7.22089203634871	0.355175207771717	0.0773137800586	0.300748815442531
Merged-chr7-126625586-4	chr7	126625481	126625681	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019738)	promoter-TSS (NM_019738)	-111.0	NM_019738	56312.0	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	5.1626619132732	6.50482768154489	5.27230576577837	4.73749628511944	5.91867754650703	6.15369770343805	5.6821611934678	5.54938521353142	0.360723342651915	0.581941382290382	0.816461587735577
Merged-chr19-5692775-4	chr19	5692666	5692866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022012, intron 3 of 11)	intron (NM_022012, intron 3 of 11)	3635.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	6.24870031498228	5.50565829066447	5.70438631976483	5.5213456901968	5.92365738513414	5.53737507387882	5.6241078265771	5.74994887807478	-0.0732738210154614	0.80892458906433	0.926189832628403
Merged-chr12-79642078-4	chr12	79641975	79642175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	282658.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	5.70748114451741	5.84421419467407	5.75618419965319	5.79316328643481	5.61083568230376	5.52274459518351	5.28615050848285	5.43468817383023	-0.511149463354202	0.0544107018456772	0.243534247246073
Merged-chr12-70235358-4	chr12	70235254	70235454	+	860.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7513.0	NR_045174	414124.0	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	4.16143708843098	4.22423016626353	4.37791579635101	4.04113714389003	3.9545471792287	4.50700588427034	4.1895722901583	4.1117058859296	-0.000257939261895119	0.999509676134962	0.999758432962781
Merged-chr3-55227141-4	chr3	55227130	55227330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15134.0	NM_019978	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	4.65740067681485	4.20851164587456	4.69927462233343	5.01381938949575	5.0679096834232	4.7930692036936	5.14199322128786	4.95194229719676	0.607888598729482	0.11124901889244	0.368537125696065
Merged-chr14-122068093-4	chr14	122067991	122068191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33417.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	5.50633042159482	5.84441422691552	5.29264719893153	5.21615873703297	6.04662141780733	5.65474226405867	5.5870355981012	5.47489617467237	0.405410012365139	0.190975036581836	0.490311892807621
Merged-chr5-96163008-3	chr5	96162914	96163114	+	983.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1024.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	4.70334802302652	4.69827249415667	4.98307761080008	4.88156030740268	4.72604821471119	4.75673583810883	4.60255852635	4.66149115776307	-0.286027719252942	0.396601695469627	0.695284556331027
Merged-chr4-129861571-3	chr4	129861449	129861649	+	924.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40841.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	2.84669125856359	2.77039414970715	2.93249954517286	2.32173583717614	4.25762660319095	3.67015386608052	3.7266434663556	4.11103209939782	7.26735731392569	6.04908122632823e-15	9.69746740109948e-13
Merged-chr6-38354477-4	chr6	38354376	38354576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347122, exon 1 of 13)	5' UTR (NM_001347122, exon 1 of 13)	127.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	8.12160933437413	8.67375104003424	8.46703472267775	7.8801459381596	8.20236341848721	8.54395607938146	8.1765255106124	7.91702471332469	-0.114505655335587	0.609983706179034	0.831398279446287
Merged-chr2-181931238-4	chr2	181931126	181931326	+	739.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60000.0	NM_001205282	672125.0	Mm.489571	NM_001205282	ENSMUSG00000098505	Gm14496	-	predicted gene 14496	protein-coding	5.10461383107625	4.65273792618095	5.30449450541001	4.87265056814981	4.42387342864418	4.80523026761664	4.88187569605797	5.30070901646949	-0.225962885108619	0.559081061810417	0.803611286320753
Merged-chr3-8667183-4	chr3	8667077	8667277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010423)	promoter-TSS (NM_010423)	-139.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	7.72841894434022	8.18733483039566	8.22950011596456	8.41269515894281	8.16983503444975	8.18558917368077	8.40789469808706	8.1150642270236	0.0668788685848808	0.72983200415202	0.892804127302382
Merged-chr19-6552541-2	chr19	6552441	6552641	+	722.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9471.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	3.27513452102082	3.1555954101484	3.09317924834689	2.87528920543788	3.11860270034599	3.39042377484688	3.42037805746332	3.38238817019907	0.885371906217701	0.114308876364764	0.373897868239856
Merged-chr13-105380093-4	chr13	105379967	105380167	+	874.392822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-63626.0	NM_008308	15550.0	Mm.4716	NM_008308	ENSMUSG00000021721	Htr1a	Gpcr18	5-hydroxytryptamine (serotonin) receptor 1A	protein-coding	3.50222618284838	3.85745062437654	3.50270296321013	3.19182343224785	3.36110232494778	3.67582410253241	3.64542140059662	3.44342910185797	0.0158934890304041	0.97643280808565	0.991537706656775
Merged-chr19-10520602-4	chr19	10520502	10520702	+	782.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025333, intron 1 of 3)	B2_Mm2|SINE|B2	4607.0	NM_025333	66072.0	Mm.180063	NM_025333	ENSMUSG00000024668	Sdhaf2	0610038F07Rik|AA407634|AW049997	succinate dehydrogenase complex assembly factor 2	protein-coding	4.00159914837325	4.02681340384071	3.63235350945864	3.41176763111547	3.92657925349852	4.17251985222772	3.88996139112437	3.95295018229169	0.575207244497695	0.233709690531519	0.543421601409349
Merged-chr13-58113341-4	chr13	58113261	58113461	+	827.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001362415, exon 1 of 15)	5' UTR (NM_001362415, exon 1 of 15)	286.0	NM_001362415	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	3.93026867691642	3.59501159288167	3.83349639654863	3.91215436120928	3.85510505683626	3.79017174325432	4.04555156342835	3.77977614379566	0.125569098644697	0.781037078949054	0.914773964552732
Merged-chr14-27344735-4	chr14	27344636	27344836	+	939.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	8699.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	4.86293891425742	4.70688648957736	4.75769752335013	4.52409991937411	4.70621899844547	4.5044451508855	4.73511504691713	4.89386493640048	0.030530972083914	0.930364312739193	0.974862379161828
Merged-chr15-78895872-4	chr15	78895777	78895977	+	923.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3891.0	NR_133564	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	4.83412743694563	5.03815789212451	4.38451741059023	3.85513648797872	5.15267018216107	4.61281927666032	4.66614187192162	4.68547945276978	0.412185316356588	0.367874485086469	0.672391391879664
Merged-chr11-49060268-2	chr11	49060168	49060368	+	728.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145164, intron 1 of 1)	intron (NM_001145164, intron 1 of 1)	3944.0	NM_001145164	100039796.0	Mm.482363	NM_001145164	ENSMUSG00000078921	Tgtp2	TGTP	T cell specific GTPase 2	protein-coding	3.36985312807869	3.28855964497226	3.13054175129683	2.83602095934805	3.18681344435811	3.64418882880315	3.40928673446276	3.25410191643408	0.797555881958953	0.170320608294443	0.463462442762831
Merged-chr1-93115338-4	chr1	93115254	93115454	+	930.337524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13480.0	NM_001110315	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	4.29597165200162	4.12428551210992	4.54890022390419	4.54250296782027	4.55219676456917	4.6003425206997	4.44966423793726	4.19775747872699	0.145159342338756	0.711763626826546	0.884643056346134
Merged-chr3-142527634-4	chr3	142527536	142527736	+	971.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2700.0	NM_001083312	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	4.63106659777574	4.68420467399379	4.49492553074784	4.46991198706671	5.27006359653793	5.17782512141405	5.16053296710032	4.90133836438465	1.16019656769499	0.000361747384882093	0.00591169526439592
Merged-chr13-5868970-3	chr13	5868848	5869048	+	666.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011803, exon 4 of 4)	3' UTR (NM_011803, exon 4 of 4)	7459.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	4.36006391250406	4.51096233649538	4.11408731353531	3.32391361076417	3.95890657201164	4.28795867463973	3.47858321256862	3.7488674448529	-0.666167854839917	0.250571886925077	0.561752817307346
Merged-chr10-10471292-4	chr10	10471200	10471400	+	841.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	1014.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	4.26781787817358	4.16301880061178	4.26849066939532	4.57001848922518	3.90308062588622	4.26050337362216	3.91716208136093	3.87475343518349	-0.899228138730631	0.0368130145547327	0.191119892066653
Merged-chr2-19666030-4	chr2	19665924	19666124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7962.0	NM_027715	71198.0	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding	5.52419734577612	5.46764256829535	5.75944890624198	5.71548398854297	5.79444186597136	5.41913731566561	5.75364850775195	6.02880503361349	0.239267385940573	0.387208658634913	0.688133554203897
Merged-chr7-127615186-4	chr7	127615099	127615299	+	967.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177226)	promoter-TSS (NM_177226)	73.0	NR_155450	320683.0	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	4.48683216983668	4.37612501472795	4.72478507445311	4.22710641466174	4.73367777224898	4.61932642176638	4.7373087742258	4.79166497274868	0.609083678218344	0.0926056108934982	0.332861866093081
Merged-chr1-173940529-3	chr1	173940426	173940626	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302649, intron 2 of 9)	Lx8b|LINE|L1	1966.0	NM_001302649	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	5.3031589604829	5.39164825114153	5.57100311385436	6.11995449509829	3.91047683265053	4.19334086858722	3.96924077450927	4.11663507894509	-3.69030211527981	4.77254051723853e-16	9.181207066933e-14
Merged-chr8-68368768-1	chr8	68368668	68368868	+	552.0	f0_balb.idr	intron (NR_038181, intron 1 of 3)	MER63A|DNA|hAT-Blackjack	309.0	NR_038181	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	2.91931682530727	2.55253496889085	2.70285357556582	2.73839773717721	2.33208532768182	2.47016521161777	2.36182548962048	2.44060341888543	-1.98186686441442	0.00963844389055486	0.0769205962199579
Merged-chr10-42269552-4	chr10	42269464	42269664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	7178.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	5.88548076754367	6.66473881586849	6.86682377499641	6.96479119391701	6.28791824051369	6.19176289216436	6.23890615969246	6.1437001914008	-0.6639942620681	0.0182034080332317	0.120194795444481
Merged-chr12-88360588-4	chr12	88360539	88360739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028105)	promoter-TSS (NM_028105)	125.0	NM_001361599	72113.0	Mm.181387	NM_028105	ENSMUSG00000021044	Adck1	2610005A10Rik	aarF domain containing kinase 1	protein-coding	7.2217597192771	7.50330242230785	8.02477927264394	7.59324821071671	7.22009747089139	7.48914563452236	7.52523531762214	7.08511630062448	-0.369628807767514	0.102654887468648	0.351917942259349
Merged-chr12-102743734-4	chr12	102743630	102743830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324515)	promoter-TSS (NM_001324515)	11.0	NM_001324515	320351.0	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	7.70221417757972	7.98653717743866	7.8772595595229	7.74465832749109	8.058491143393	7.90624783269739	8.01714351719968	8.09418133035398	0.249216175617421	0.131540695038533	0.403857870485267
Merged-chr5-114567895-4	chr5	114567805	114568005	+	928.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004180)	promoter-TSS (NM_001004180)	-346.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	4.58055746144581	3.86997688849115	4.4176508633857	4.50349080788276	4.44286469355641	4.67444855369699	4.5596203573732	4.68834802326197	0.486497949591778	0.230934406379938	0.540396396919272
Merged-chr10-30618437-4	chr10	30618334	30618534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025798)	promoter-TSS (NM_025798)	-68.0	NM_025798	66847.0	Mm.46218	NM_025798	ENSMUSG00000019791	Hint3	0610010I17Rik|AV009015|HINT-3|HINT-4|HINT4	histidine triad nucleotide binding protein 3	protein-coding	8.46327791661147	8.38391209847925	8.71248781253296	8.305803345147	8.44254470480372	8.73548264743256	8.70155405477318	8.56144857327289	0.179301372022271	0.286880139175925	0.598559033457516
Merged-chr6-29621438-3	chr6	29621336	29621536	+	950.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11587.0	NM_001347079	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	3.7380770818107	3.97961019275464	4.41265001032054	3.88675328984504	3.78640357854031	3.67914927262997	3.777571110863	3.62082032758853	-0.868262376340162	0.072264717648003	0.288849187442219
Merged-chr15-8589852-3	chr15	8589752	8589952	+	968.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	120955.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	3.80803606833473	3.86920882379478	3.6484625063613	3.96481169222941	3.69948572379034	3.82144266093655	3.68971715222162	3.94843079129649	-0.141767141842514	0.756785301733106	0.904495357099501
Merged-chr2-180726215-4	chr2	180726118	180726318	+	873.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183161, intron 1 of 12)	intron (NM_183161, intron 1 of 12)	879.0	NM_183161	228993.0	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	4.41533092956668	3.95780820584157	3.80553653966558	4.26165292260161	3.94839583619652	4.04328452552376	4.19508445325022	4.44979351411938	0.082244511981624	0.854818127386842	0.945298752280211
Merged-chr5-124541312-4	chr5	124541233	124541433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019770, intron 1 of 3)	CpG	542.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	5.48770998675618	6.19000759546987	6.3080082145721	5.69227847055463	6.2171484561541	6.05842805273038	6.18679644032739	6.23264793025401	0.346053765108766	0.217498122637901	0.524416478819929
Merged-chr6-66952002-4	chr6	66951917	66952117	+	941.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177560, intron 3 of 4)	ORR1D1|LTR|ERVL-MaLR	55126.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	5.03855495148298	4.61987979811007	4.71171450212023	5.28701677257306	5.07016678359071	4.66801856324486	5.13586089933924	4.78897846804055	-0.047738957255832	0.897402606933607	0.961709001699535
Merged-chr3-130060840-4	chr3	130060746	130060946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207209)	promoter-TSS (NM_207209)	61.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	7.1385478329383	7.29128818984495	7.87410892848263	7.35425270162465	7.16729359389922	7.37608963271007	7.4837550547084	7.23864096934155	-0.165344568189137	0.451837731601172	0.736277967483341
Merged-chr10-68239819-4	chr10	68239658	68239858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	38968.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	6.07576184486949	6.55940094378471	6.03480945894974	5.58991138876061	6.39188271836898	6.12296437760194	5.79658010865757	5.68977289726475	-0.103419738263554	0.745157555732269	0.899431814827356
Merged-chr1-152809103-4	chr1	152809021	152809221	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 2 of 15)	RSINE1|SINE|B4	8968.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	5.3246602669827	5.48114986861969	5.00286782699213	5.48702377101607	5.5420851046493	5.62197902191857	5.72374958518513	5.8573481619106	0.571313718227377	0.0480951847542155	0.226278265478334
Merged-chr7-143769746-3	chr7	143769657	143769857	+	787.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2764.0	NM_203492	381974.0	Mm.297839	NM_203492	ENSMUSG00000050276	Mrgprg	Gm1098|Mrgg	MAS-related GPR, member G	protein-coding	3.79693618329268	3.88223264840494	4.17599098823049	4.29077989675716	3.72389654921483	4.12378767412914	3.72716320101871	3.84915000791939	-0.563036936134488	0.227778936426893	0.536465946363434
Merged-chr1-161351144-4	chr1	161351055	161351255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-int|LTR|ERVL	-44283.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	6.59588081668949	6.35225048656925	5.62541051505243	6.10803958559364	6.43286628912966	6.6644856629122	6.50312095249675	6.27554154783307	0.386778460372377	0.157494994762624	0.444059226672193
Merged-chr11-76027801-4	chr11	76027694	76027894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029658)	promoter-TSS (NM_029658)	-12.0	NM_029658	76566.0	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	6.39015959282756	6.21810002502543	5.67246763283705	5.90586070608876	6.05561964085904	6.25755780249308	6.13063128645167	5.7509490945387	-0.0149807419000619	0.956678828104461	0.984721227233449
Merged-chr10-5080220-5	chr10	5080092	5080292	+	931.4733279999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079686, intron 37 of 54)	intron (NM_001079686, intron 37 of 54)	-11129.0	NM_022027	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	4.2524516501964	4.32029203948854	4.43225033344445	4.58706335027422	4.37524587151266	4.27934336975296	4.63856357789546	4.47051128653998	0.0647255304698109	0.865692862158493	0.949726204279319
Merged-chr12-85943041-4	chr12	85942946	85943146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 28 of 32)	intron (NM_001347395, intron 28 of 32)	118096.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	6.37749960291095	6.5887612618211	6.30428214458214	6.6827793991713	6.21879129463022	6.59015932118757	6.23337719830833	6.55826798461696	-0.158528996954101	0.499682779485503	0.768441125779794
Merged-chr7-98656738-4	chr7	98656639	98656839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172280)	promoter-TSS (NM_172280)	-170.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	8.2355700745046	8.50558364756497	8.21940419210164	8.06785926511549	8.04887104035971	8.37910167418232	7.99852815542328	8.24874716161183	-0.114363430812347	0.527169424208354	0.784187929900238
Merged-chr8-124021339-4	chr8	124021223	124021423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133966)	promoter-TSS (NM_133966)	74.0	NM_133966	102162.0	Mm.291777	NM_133966	ENSMUSG00000038697	Taf5l	1110005N04Rik|AI849020	TATA-box binding protein associated factor 5 like	protein-coding	6.70407687708527	7.13778150078645	7.02094875956104	6.57048751255709	6.81482346803635	6.67185232469994	6.29167381119895	6.73003123997599	-0.318442617818628	0.187606370716312	0.486046220470858
Merged-chr2-105676289-3	chr2	105676173	105676373	+	844.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013627, exon 1 of 13)	5' UTR (NM_013627, exon 1 of 13)	144.0	NM_001244202	18508.0	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	3.52113738951819	3.28744010096785	3.42575523013836	3.39735048592709	2.79785057582518	2.98491337142	2.94055020206143	3.26481995605895	-1.67502014487009	0.00665190534213066	0.0585912597880854
Merged-chr6-123244406-4	chr6	123244280	123244480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190321, intron 3 of 4)	intron (NM_001190321, intron 3 of 4)	14537.0	NM_001190321	56620.0	Mm.271782	NM_020001	ENSMUSG00000023349	Clec4n	Clec6a|Clecsf10|Nkcl	C-type lectin domain family 4, member n	protein-coding	6.71481915049021	6.63270286586999	6.53345731410357	6.27215783182887	6.48595169559498	6.84818506021283	6.41580722424797	6.47871066509315	0.0414265513176834	0.858559343919044	0.946576014812915
Merged-chr10-127481450-4	chr10	127481362	127481562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359246, intron 13 of 23)	intron (NM_001359246, intron 13 of 23)	-20224.0	NM_001359751	237611.0	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	6.73473862753939	7.27811643147447	6.94195375883317	6.66540970621664	6.79847864226938	6.83642977568833	6.43816799456218	7.04606343870201	-0.176810288798948	0.464778632853234	0.745554240368249
Merged-chr5-53590449-4	chr5	53590374	53590574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080927)	promoter-TSS (NM_001080927)	-12.0	NM_001359152	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	7.33937740298938	7.39027164243825	7.53935207055807	7.39826204636095	7.15785687668521	7.62551933557141	7.35419701534813	7.14790994878049	-0.118691473487546	0.540373011502247	0.792761667540263
Merged-chr16-33529925-4	chr16	33529817	33530017	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 1 of 11)	intron (NM_001083902, intron 1 of 11)	11322.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	6.22757271931401	6.16720904611219	7.41792196637468	7.41394056374024	5.50916797807906	5.50631621314467	5.90783470832724	6.14172116093938	-1.70863452246545	0.0013903555445128	0.0175686343516557
Merged-chr1-72710855-3	chr1	72710769	72710969	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009084)	promoter-TSS (NM_009084)	-391.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	4.41803158654499	4.60087573482444	4.41871107285674	4.118938754556	4.87106446104252	5.1188254031466	4.76087430289899	4.70831715353307	1.0586687758635	0.00373660439004985	0.0379611043663281
Merged-chr4-125145387-4	chr4	125145297	125145497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17516.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	8.26539492409064	8.39825697105061	8.45149462587476	8.12355580920948	7.75950297751441	7.80036382127409	8.00474228919486	7.73202718233861	-0.621305647366891	0.000287840100679353	0.00490667813923474
Merged-chr8-20424831-4	chr8	20424728	20424928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028428)	promoter-TSS (NR_028428)	-14.0	NR_028428	381598.0	Mm.359054	NM_001024708	ENSMUSG00000071793	2610005L07Rik	2810038F24Rik|6720476A01Rik	cadherin 11 pseudogene	pseudo	8.1158280310296	8.17927691630067	7.23085452196142	6.48706950440953	7.41598418474098	7.68640897479497	7.5685059166167	7.24856791880071	-0.251747000092866	0.615876564808024	0.83467255086626
Merged-chr10-117899603-4	chr10	117899522	117899722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25837.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	7.81683687205414	7.88806995880854	7.98371230704122	8.05198891628952	7.84406222763533	7.55851112234665	8.19995201922866	7.828149948726	-0.0805733602849976	0.671941087793383	0.864972601452772
Merged-chr5-65577051-3	chr5	65576964	65577164	+	886.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016786, intron 3 of 6)	B1_Mur4|SINE|Alu	39819.0	NM_001310619	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	3.66145031281972	3.56225425051969	3.45178057582086	3.65463089440518	3.46283591992413	3.44423519154496	3.3817063925002	3.61067701306817	-0.375227782049467	0.447576661612473	0.733082010437389
Merged-chr15-65737474-1	chr15	65737374	65737574	+	773.0	f0_balb.idr	Intergenic	Intergenic	-49546.0	NM_133766	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	2.76149980523487	2.49721560959623	2.53253909570698	2.96027254555095	2.08013230679844	2.27649301697703	2.17027363432013	2.17373327013104	-4.87274072229397	3.01717772078079e-05	0.000730475146215837
Merged-chr18-23873366-4	chr18	23873272	23873472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	69402.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	6.49201372186832	6.08562951793366	6.97118100753657	6.73916697001159	6.39357948003682	6.45330573769977	6.18323131375636	6.48851396753007	-0.336584800834689	0.196092767573267	0.497121740324734
Merged-chr10-8513435-4	chr10	8513322	8513522	+	864.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	5403.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	4.43400128091354	4.51828412989147	4.3485604381886	4.47442864905792	4.55620218867763	4.38294124886053	4.28482753733644	4.38960070516584	-0.0785809352063442	0.831817050532097	0.935649586596462
Merged-chr6-115814255-4	chr6	115814127	115814327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110506, intron 7 of 8)	intron (NM_001110506, intron 7 of 8)	-5484.0	NM_172086	19951.0	Mm.104368	NM_172086	ENSMUSG00000057841	Rpl32	AU020185|rpL32-3A	ribosomal protein L32	protein-coding	5.54451587076335	5.74378808693588	5.37250063208074	5.86163507088927	5.68481985728787	5.54871570492224	5.21717203116124	5.33756999938084	-0.326270816142074	0.270796992919718	0.582604942081796
Merged-chr18-63691919-3	chr18	63691830	63692030	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016792, intron 1 of 7)	CpG	429.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	5.25216625814901	5.33206256235064	5.80139224288335	5.12626202856206	5.34643778432823	5.29432511517043	5.51591468959256	5.66358362939768	0.126715622689567	0.684593479193846	0.870839217519815
Merged-chr1-37300852-4	chr1	37300768	37300968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	1030.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	6.40774404795399	6.811504307884	6.09026400494363	6.89293234837209	6.22275156292304	6.74912263228833	6.10332529014589	6.15198716549603	-0.401364719046858	0.155488697007172	0.441078077821691
Merged-chr1-131110937-4	chr1	131110832	131111032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13089.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	7.73605266930296	7.96964950969808	7.37392935986307	7.17823033311925	7.75439518815582	7.89882374835913	7.77587451509949	7.58149263658567	0.212021876320122	0.338712990546439	0.648133016670386
Merged-chr14-20734576-4	chr14	20734480	20734680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010811)	promoter-TSS (NM_010811)	-18.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	8.20744608072303	8.59919151276084	8.34636768957404	8.4447906022995	8.23201893187393	8.32432989658552	8.47438020511482	8.20337803000108	-0.126145324875019	0.449089930891256	0.734288291431988
Merged-chr1-78657798-4	chr1	78657709	78657909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028817)	promoter-TSS (NM_028817)	-16.0	NM_001136222	74205.0	Mm.276016	NM_028817	ENSMUSG00000032883	Acsl3	2610510B12Rik|Acs3|C85929|Facl3|Pro2194	acyl-CoA synthetase long-chain family member 3	protein-coding	8.69875672381682	8.80967974152085	8.78849367212093	9.0035413505152	8.82152690492101	8.66940159400312	8.96079169858697	8.55643482159081	-0.0898565156505556	0.583941689903177	0.817485282428486
Merged-chr6-86594840-4	chr6	86594735	86594935	+	952.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-33339.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	4.64763662924476	5.21578725051563	4.42018137338424	4.7341096020059	4.71026924568707	5.0157578273133	4.4960966258548	5.15605576526025	0.151839017572946	0.699779997094378	0.87891093332123
Merged-chr6-128446279-4	chr6	128446178	128446378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028593, intron 2 of 4)	intron (NR_028593, intron 2 of 4)	7521.0	NR_028593	791299.0	Mm.297516	NR_028592	ENSMUSG00000059659	Gm10069	-	predicted gene 10069	ncRNA	5.25190986419929	4.89378949551312	5.36909248386058	4.97917163146632	5.31877238748188	5.19652120020363	5.52141211092667	5.18682269646138	0.354458126406531	0.252996258582578	0.564249434110899
Merged-chr2-119336094-4	chr2	119335998	119336198	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019454)	TTS (NM_019454)	-9901.0	NR_030683	100043609.0	Mm.185068	NR_030683	ENSMUSG00000074912	Gm14207	Dll4	predicted gene 14207	ncRNA	4.63098568288856	4.75391323452655	4.90155752932948	3.97474554481021	4.4736928163356	4.68778035361378	4.45097090873594	4.01681216674409	-0.392477292938935	0.386741929132945	0.687797608117846
Merged-chr2-152740626-4	chr2	152740528	152740728	+	819.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4377.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	4.14475679442911	3.92722512049309	3.87846887155038	3.50133868174625	3.7704998323984	4.05035741565897	3.52948471970105	3.87613820249478	-0.159110929664719	0.748859676412394	0.901109312321074
Merged-chr5-123398040-4	chr5	123397920	123398120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133917, intron 1 of 16)	intron (NM_133917, intron 1 of 16)	3222.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	5.8623735845248	5.66562891454784	5.37535273107883	5.66335015251519	5.80870415248898	5.45488075241285	5.46728631601888	5.60025335732194	-0.0869844655695165	0.755555588805572	0.903814786743389
Merged-chr17-70853715-4	chr17	70853626	70853826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164074)	promoter-TSS (NM_001164074)	-194.0	NM_001164074	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	7.20469086018587	7.25559117592826	7.21727125801593	7.68927791239671	7.35185158433694	6.98664366799418	7.70576030905463	7.39060479823458	0.0194494037744073	0.931792531477533	0.975357890284199
Merged-chr3-135720089-4	chr3	135719999	135720199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28552.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	5.8304822690048	5.8811794053463	5.80666470686502	6.03264851909595	6.28216029528926	6.03196308546426	5.80193696681723	6.16966153679163	0.298183579412967	0.236715835799245	0.546714574657013
Merged-chr16-92867887-4	chr16	92867771	92867971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-41797.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	5.55639227535676	5.52762786165477	5.32123225108152	5.54416525165957	5.87102788789434	5.32852476378014	5.7718234992051	5.60616084258208	0.299725691496628	0.284654610569502	0.596415593009731
Merged-chr1-173878493-2	chr1	173878393	173878593	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170853, intron 2 of 9)	intron (NM_001170853, intron 2 of 9)	1694.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	2.97344278831129	3.02581144148338	3.09041515441275	3.00493127431861	2.77022512625357	2.95262497253541	2.90167609062275	3.08870352091655	-0.411738672654817	0.489229017317835	0.761620931360531
Merged-chr9-82888881-4	chr9	82888781	82888981	+	942.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081216, intron 29 of 39)	intron (NM_001081216, intron 29 of 39)	59075.0	NM_001168240	65099.0	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	4.99030367215916	4.76988654869405	4.75046425850197	5.62354688301285	5.48144745366319	5.16776872648248	5.13700727940018	5.33775313722356	0.32695011271185	0.384085971979066	0.685682711732786
Merged-chr16-3908687-4	chr16	3908584	3908784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029738)	promoter-TSS (NM_029738)	5.0	NM_028484	73261.0	Mm.486226	NM_028484	ENSMUSG00000005983	1700037C18Rik	2810022L20Rik	RIKEN cDNA 1700037C18 gene	protein-coding	5.32356642559714	5.51045458448253	5.56172725294746	5.32398977808728	5.83735730151684	6.06490885208248	5.73210778501281	5.25406781695428	0.552979708339411	0.0616156624440668	0.262663326080378
Merged-chr1-92910717-4	chr1	92910625	92910825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_138577)	promoter-TSS (NR_138577)	-36.0	NR_138577	75995.0	Mm.46179	NR_138577	ENSMUSG00000097251	5033417F24Rik	6330419D11Rik	RIKEN cDNA 5033417F24 gene	ncRNA	5.87704778450796	5.80286553659578	5.85457005977524	6.14495710896877	5.87859361261695	5.68133303475534	6.30771083783386	5.77720527666601	-0.00711777778559352	0.979194478675671	0.992606608380485
Merged-chr14-65381729-4	chr14	65381632	65381832	+	998.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199029, intron 1 of 9)	intron (NM_199029, intron 1 of 9)	23056.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	5.16214571345166	5.51656206477974	4.91098800521776	5.27680138523667	5.29528983952081	5.12799167892158	5.13780520350401	5.36963711773236	-0.00558391184773793	0.985678725232948	0.994721627180638
Merged-chr13-5858984-4	chr13	5858856	5859056	+	905.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045891)	promoter-TSS (NR_045891)	-864.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	3.56898806758608	3.44700912214355	3.91989745568313	3.78095566487941	3.78665362766374	3.62647061584382	3.55615629268756	3.87298868169046	0.0730578197870679	0.881004306603602	0.955322489265647
Merged-chr7-45054334-4	chr7	45054207	45054407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022999, intron 6 of 6)	intron (NM_022999, intron 6 of 6)	-1426.0	NM_175022	233210.0	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	8.20391199205947	8.18306840927871	8.24080914165663	8.23592374349868	8.30495991011655	8.31498848513721	8.64402890792045	8.13824797754051	0.187133089426545	0.269183554801545	0.580753412406101
Merged-chr16-93915630-1	chr16	93915530	93915730	+	637.666687	f0_c57.idr	Intergenic	B4|SINE|B4	13937.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	2.62838399055447	2.6314043234077	2.70625763229415	2.37185423050801	3.22974774977911	3.27190092352419	3.02799535813886	3.35291026578535	3.23491040668803	1.35836821085805e-06	4.62176342641802e-05
Merged-chr12-77241031-4	chr12	77240917	77241117	+	756.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045554, intron 1 of 11)	(T)n|Simple_repeat|Simple_repeat	2278.0	NR_045554	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	3.53116132522142	3.35345087231465	3.35179330565212	3.34539330557382	3.57080541321545	3.75817856366413	3.85590536025772	3.73613966714933	1.08359825627429	0.0244097480946197	0.146029707482513
Merged-chr7-75686294-4	chr7	75686200	75686400	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 13 of 36)	intron (NM_029332, intron 13 of 36)	-162038.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	5.30857673104959	5.61363929402489	5.53607519128589	5.64502074657265	5.44905712168685	5.45366214968877	5.2832563361971	4.91039558195629	-0.428573310358455	0.155210151706843	0.440817750658429
Merged-chr8-105346622-3	chr8	105346518	105346718	+	850.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	1352.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	3.60959804752488	3.41977525092632	3.40341918339065	3.06768698983296	3.39558252254027	3.46078781068632	3.27440061850069	3.45635109149625	0.0731035646828591	0.892853780069978	0.95990513407345
Merged-chr5-118459273-3	chr5	118459208	118459408	+	964.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	-101411.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	3.33337791698219	3.56744567510673	3.44430701581702	3.3009705019796	3.38345566895885	3.32413472132275	3.32147991252408	3.27319384510345	-0.29281580330061	0.573539218638738	0.811888602285473
Merged-chr11-116767910-2	chr11	116767806	116768006	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_011371, intron 3 of 8)	intron (NM_011371, intron 3 of 8)	7601.0	NM_011371	20445.0	Mm.436887	NM_011371	ENSMUSG00000009588	St6galnac1	Siat7a	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding	5.35232372680483	5.34141803337879	4.87382196415276	5.35739299353136	3.24707574624765	3.77989469138554	3.5520765952333	3.56295983041339	-6.57955749904066	1.46851587415787e-11	1.29205799019386e-09
Merged-chr17-34072269-4	chr17	34072171	34072371	+	971.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-20108.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	4.10839767513075	4.47575596570892	5.08873797390227	4.38688641842421	5.77460204750046	5.65533890589647	5.90043926620759	5.77407312681571	2.27418643409052	1.57853723341324e-10	1.1711433541546e-08
Merged-chr2-68430841-4	chr2	68430722	68430922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	41159.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	5.57519070276817	6.26434441466444	6.08706183426921	5.6255885295101	6.26645094795639	6.30066122266243	5.79084919412685	5.71352357170941	0.210458888878187	0.487217531199293	0.760600900973846
Merged-chr6-5200093-3	chr6	5200018	5200218	+	936.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6172.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	3.71705387205663	3.80742767477072	3.56121409292623	4.0273052181756	3.23850363721986	3.43236104013407	3.43311799297754	3.61345183832474	-1.22191265504233	0.0191504634153686	0.124301389447788
Merged-chr10-84340327-4	chr10	84340213	84340413	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100158.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	5.61626251628271	5.22385529697524	6.17605466981045	6.18800492873568	5.3030397648642	5.29613176485013	5.66401708025443	5.18418671197758	-0.838010924608181	0.0141168601838089	0.100578212195073
Merged-chr2-25279342-3	chr2	25279243	25279443	+	888.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175300, intron 8 of 12)	intron (NM_175300, intron 8 of 12)	6877.0	NM_175300	99152.0	Mm.291624	NM_175300	ENSMUSG00000026965	Anapc2	9230107K09Rik|AL024279|Apc2|Emi4|Imi4|mKIAA1406	anaphase promoting complex subunit 2	protein-coding	3.34720725220323	3.56459732104911	3.07634366835079	3.14615522093245	3.75919892333693	3.69155066518759	3.55817925126099	3.62180840536465	1.23364668971422	0.0181837757295781	0.120098633446751
Merged-chr12-32911052-3	chr12	32910945	32911145	+	745.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	42744.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	3.47418784181984	3.52097097401992	3.5364584123987	3.67663827481368	3.90661363265319	3.87841133957307	3.88583670455646	3.98860049616015	1.03043778590308	0.0257406680485627	0.151408562187311
Merged-chr3-108881132-4	chr3	108881032	108881232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177091, intron 4 of 12)	intron (NM_177091, intron 4 of 12)	8876.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	5.92240449342622	5.96437714168601	6.42568238854149	6.08512117700359	5.83167883627992	5.57531032980127	6.17694434627096	5.79943036159347	-0.388422757018768	0.152057384884695	0.435906076000675
Merged-chr1-13256410-4	chr1	13256332	13256532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 2 of 22)	intron (NM_008678, intron 2 of 22)	115997.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	5.83225471943505	5.60576464253174	5.94212412166817	5.93807592380746	7.23329385930365	7.24552645440698	7.29406936139207	7.01989222699323	1.95907894444665	8.41293447415557e-19	2.43319261137637e-16
Merged-chr11-108378231-4	chr11	108378126	108378326	+	884.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17071.0	NM_013475	11818.0	Mm.2266	NM_013475	ENSMUSG00000000049	Apoh	B2GPI|beta-2-GPI|beta2-GPI	apolipoprotein H	protein-coding	4.49549935480037	4.33420526497097	4.80209576590171	4.29618465971666	4.10643615031256	4.21853571201403	3.96687129470454	4.37226230144839	-0.764994562192993	0.0656473819603634	0.272782648208898
Merged-chr15-91260701-3	chr15	91260603	91260803	+	646.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68696.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	3.65533412220275	3.86231137781324	4.11474132422496	3.76487819481081	3.65552745971946	3.46092043437258	3.79561838190694	3.59748512932166	-0.66751376526944	0.168970840240326	0.461518627684809
Merged-chr12-102517841-4	chr12	102517758	102517958	+	924.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37083.0	NM_007693	12652.0	Mm.4137	NM_007693	ENSMUSG00000021194	Chga	ChrA|cgA	chromogranin A	protein-coding	4.74846695648149	4.33776248056972	4.11790132477756	4.73627590214745	4.45548627390677	4.29816763686947	4.20430052430203	4.71247736547079	-0.200859379260114	0.630180712206099	0.842667104605937
Merged-chr8-123477323-2	chr8	123477223	123477423	+	823.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054070)	promoter-TSS (NM_054070)	-539.0	NM_054070	114896.0	Mm.287475	NM_054070	ENSMUSG00000031967	Afg3l1	1700047G05Rik|3110061K15Rik	AFG3-like AAA ATPase 1	protein-coding	2.81145177839883	2.60053040144884	2.69854896505682	2.47035455173043	2.45285793530227	2.38591762300369	2.35685728723909	2.69705324581831	-0.896814350416153	0.217920268461353	0.524812112221229
Merged-chr2-122145946-4	chr2	122145864	122146064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026251, intron 2 of 17)	intron (NM_026251, intron 2 of 17)	-1723.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	5.61966840085245	5.55052709342194	5.43345888964025	5.32845865378701	5.39829256206063	5.28646848168738	5.59218358310006	5.59159946776252	-0.00696903361652613	0.980139047678412	0.992782655212549
Merged-chr11-32450397-2	chr11	32450312	32450512	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-4958.0	NM_001361561	327900.0	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	3.25711430270528	3.37708310167671	3.36989252484548	2.92217891015432	3.2841258995413	3.31014894597914	3.30189052901783	3.31311200491691	0.255112885845088	0.647784455614333	0.85185825899816
Merged-chr7-79780945-7	chr7	79780833	79781033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037927, intron 17 of 17)	intron (NM_001037927, intron 17 of 17)	12657.0	NM_008588	17292.0	Mm.1404	NM_008588	ENSMUSG00000030544	Mesp1	bHLHc5	mesoderm posterior 1	protein-coding	4.49382393720346	4.42373315089499	4.84797903460547	4.40548480559882	4.86522445871959	5.26441385697575	4.47423248553939	4.66059671671576	0.636522931387734	0.0979711808837252	0.342997918652436
Merged-chr1-192727210-3	chr1	192727099	192727299	+	831.138916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 5 of 11)	intron (NM_144881, intron 5 of 11)	44020.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	3.50284057989833	3.584037123486	3.50328173745898	3.35122600307049	4.01073929790797	3.4915193857744	4.02781228468303	4.0445308457881	1.32521414088034	0.00600071274243013	0.0542406026578678
Merged-chr15-55390340-3	chr15	55390236	55390436	+	988.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 14 of 47)	intron (NM_181277, intron 14 of 47)	82586.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	4.65039437972932	5.09569713614407	5.03475208118145	5.2464134010988	4.38938293570978	4.35281437987173	4.58854444167217	4.47451478659979	-1.25335515651976	0.000608135199640811	0.00903033361106692
Merged-chr14-20479950-4	chr14	20479859	20480059	+	953.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009674, exon 1 of 13)	5' UTR (NM_009674, exon 1 of 13)	174.0	NM_001110794	11750.0	Mm.280231	NM_009674	ENSMUSG00000021814	Anxa7	AI265384|AI316497|Anx7|synexin	annexin A7	protein-coding	4.75868279059176	4.94856554557173	4.47110275491694	4.82129906181093	4.4101146288748	4.777261422244	4.73686431877222	4.79262052237553	-0.190228807470972	0.596767780114701	0.824946763915719
Merged-chr17-13008215-2	chr17	13008115	13008315	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013671, exon 2 of 5)	exon (NM_013671, exon 2 of 5)	376.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	7.06624911557644	7.42383815093285	7.13873160674246	6.77839869964979	7.1494861734531	7.50742038597911	7.20229119113687	6.90667618589645	0.125361164404755	0.585295301853605	0.818064137977413
Merged-chr3-10301990-3	chr3	10301886	10302086	+	742.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029310)	promoter-TSS (NM_029310)	-803.0	NM_029310	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	3.46311308198298	3.61028088250351	3.23941175773844	3.58794636776764	3.01189808888289	3.152576694192	3.54662013539972	2.96846144724281	-1.09420090603069	0.0682055031658966	0.278803164867935
Merged-chr12-12287481-6	chr12	12287342	12287542	+	939.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	25303.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	3.93149255447666	3.77049476344413	3.78677630410096	3.4297985713006	3.7056447560298	3.74190118377823	4.0433517797307	3.78456629259611	0.282575257125139	0.556150674389439	0.801835080198288
Merged-chr5-100550479-3	chr5	100550372	100550572	+	849.833374	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21733.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	3.12502676500784	3.44782775360266	3.20153156703195	2.77527721463932	4.15940769434725	3.92419645410792	3.91572439732319	3.97493435536557	2.94569692015319	1.6460366704986e-07	6.75292473598962e-06
Merged-chr6-17520852-4	chr6	17520760	17520960	+	970.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008591, intron 4 of 21)	intron (NM_008591, intron 4 of 21)	56903.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	5.11785097107036	5.84482196420874	5.76380823669065	5.97614659514568	5.29088331346997	5.10636058049288	5.23096360878658	5.07832691949021	-0.954540332536246	0.00300722987536715	0.0320484526573976
Merged-chr5-114926385-4	chr5	114926299	114926499	+	903.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359946, intron 1 of 4)	intron (NM_001359946, intron 1 of 4)	3159.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	3.98188788703482	4.55594499262268	3.92833999168794	4.10592685432978	4.57784664628985	4.43777671188777	3.73822878911386	3.86986315093221	0.105791535232392	0.833016071876936	0.936221000578989
Merged-chr10-67202282-3	chr10	67202176	67202376	+	693.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 3 of 25)	MLT2D|LTR|ERVL	16526.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	3.51693974558914	3.65358710636277	3.62406603224059	3.34954052541342	3.55741297648944	3.74189277715704	3.32782667945348	3.56982826398314	0.0772708965320801	0.877993071972449	0.954314763971155
Merged-chr17-24141672-4	chr17	24141573	24141773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011062)	promoter-TSS (NM_011062)	-79.0	NM_001080773	18607.0	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	8.53949475183867	8.6975056573063	8.40495524619524	8.5078005703715	8.50995573031366	8.7793281212026	8.61946870762315	8.15346837328878	-0.00963475582601499	0.957551808391929	0.984850737934993
Merged-chr2-73547430-4	chr2	73547336	73547536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-17949.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	6.0080544039315	6.44761740162056	6.72898770560425	6.25833716307984	6.08582835892039	5.96268548755402	6.24668230207427	6.36443507231993	-0.316808260047406	0.219899422373229	0.527543679983285
Merged-chr2-4919012-4	chr2	4918902	4919102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010726)	promoter-TSS (NM_010726)	6.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	6.37390186561514	6.59657886236245	6.44522269901546	6.43008269846107	6.20635120122364	6.43868830451202	6.64410634367438	6.33387808477486	-0.0823322413940414	0.713613498784605	0.885457948749053
Merged-chr14-60290541-4	chr14	60290451	60290651	+	882.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144843, intron 6 of 13)	intron (NM_144843, intron 6 of 13)	25346.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	4.11569109662585	4.30998565632121	3.91507789108358	4.22779182865786	4.02328373869208	4.14264407540476	4.18744184071842	4.06644877120017	-0.144509760129088	0.72627239429121	0.891034932051019
Merged-chr7-64388911-3	chr7	64388814	64389014	+	893.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026483, exon 3 of 11)	exon (NM_026483, exon 3 of 11)	3322.0	NM_026483	67973.0	Mm.26973	NM_026483	ENSMUSG00000030521	Mphosph10	2810453H10Rik|5730405D16Rik|AI326008	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding	3.69532172767518	3.8622563309509	3.69581541913313	3.79298706203562	4.1848194138326	3.7571158522388	3.62627460400205	3.74741235464856	0.273990236481683	0.56396557988909	0.806551268713802
Merged-chr3-62458550-4	chr3	62458436	62458636	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081295, intron 12 of 13)	intron (NM_001081295, intron 12 of 13)	48452.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	4.52718200065274	4.64811899098137	5.18623843797694	5.31757163628787	4.79865567502253	4.75474363383834	5.18818094758981	4.82191261234372	-0.152025254189762	0.692939509859635	0.875187765226167
Merged-chr15-93917088-4	chr15	93916965	93917165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045737, intron 2 of 3)	intron (NR_045737, intron 2 of 3)	10046.0	NR_045737	77248.0	Mm.410768	NR_045737	ENSMUSG00000116360	9430014N10Rik	-	RIKEN cDNA 9430014N10 gene	ncRNA	5.18638015045598	4.89042734963074	5.24975917900329	5.72409391875559	4.87356438711418	5.04110836326748	5.36648282629437	5.33432860703136	-0.281104322027283	0.428657868726631	0.71961368508163
Merged-chr9-121669610-2	chr9	121669478	121669678	+	860.458374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011703, exon 13 of 13)	3' UTR (NM_011703, exon 13 of 13)	26862.0	NM_011703	22354.0	Mm.282007	NM_011703	ENSMUSG00000032528	Vipr1	AV071699|VIP-R1|VPAC1	vasoactive intestinal peptide receptor 1	protein-coding	3.09419283870867	2.88055950884551	3.21809593784485	3.05835433024395	3.27740630815698	3.38993079330941	3.31726329190462	3.48133320260657	1.12836451647097	0.0391865022791648	0.199132768515756
Merged-chr17-35135284-5	chr17	35135171	35135371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252468)	promoter-TSS (NM_001252468)	93.0	NM_057171	224727.0	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	6.06358221525505	6.78513618817736	6.41347809171246	6.00839783252292	6.4239689245904	6.32792545505061	5.91766788571401	6.39184805003584	-0.10145273399505	0.717504416691634	0.887023184585483
Merged-chr1-45858232-4	chr1	45858113	45858313	+	964.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63047.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	6.19952310336725	6.49832792201145	6.20062889866013	6.26584671440749	5.8340902822973	5.78282941404696	5.57451186109419	5.22949992043963	-1.05428664971131	0.000100543361755649	0.00203949157777296
Merged-chr9-16238162-4	chr9	16238059	16238259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	Lx10|LINE|L1	140072.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	5.27044576182088	5.09084630425284	5.33486110617017	5.73924504061754	5.84624384849557	5.3822509602463	5.39750687424876	5.58302368431788	0.298189210813593	0.350467269390286	0.658055137870761
Merged-chr14-101481381-4	chr14	101481290	101481490	+	838.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 8 of 18)	HAL1|LINE|L1	127801.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	3.43048478307291	3.50020800782614	3.37230584909464	3.66843876584345	3.65703169395452	3.6014287585027	3.52662166800819	3.24523307856521	0.041458938864945	0.936272507336461	0.97690766292493
Merged-chr4-122838610-4	chr4	122838518	122838718	+	961.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008917, intron 1 of 8)	L2b|LINE|L2	2391.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	4.97954459613359	4.87991183078596	4.83396370799416	5.08910256325784	5.06112374938719	5.08321658947526	4.88594736380824	5.13890575890938	0.162971896077867	0.604475166020177	0.828485859893348
Merged-chr15-50363123-3	chr15	50363025	50363225	+	645.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	525924.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	3.07808038655336	3.21571680201498	3.13735899197865	3.13715341926824	3.17137522193901	3.05900271505642	2.94312181083611	3.13573484580609	-0.237605342577481	0.67315447544802	0.865631998986751
Merged-chr1-171871909-1	chr1	171871809	171872009	+	542.0	f0_balb.idr	intron (NM_001289470, intron 3 of 8)	MER63C|DNA|hAT-Blackjack	32212.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	3.23186893830024	3.48974104320704	3.1046901405411	3.17074839635409	3.31551020328341	3.34436085670156	3.44070976026559	3.4010622062501	0.429086367786625	0.418839160884677	0.712112541828539
Merged-chr6-13874501-2	chr6	13874401	13874601	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045995, intron 1 of 2)	intron (NR_045995, intron 1 of 2)	2932.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	4.54709576815325	4.03942116845283	3.99596760666481	4.2694593254331	4.6065441362918	4.71714885549966	4.08859010284109	4.50689797734444	0.629566841598998	0.134598959256409	0.408398453510889
Merged-chr2-156258278-3	chr2	156258199	156258399	+	987.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 4 of 17)	B1_Mur4|SINE|Alu	-54174.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	4.33805655918922	4.20733140998506	4.22354284151484	4.2362513549512	3.39892943397589	3.8624980225943	3.54104429537216	3.79545920595385	-1.76712974263299	0.000224411250273006	0.00400234737739472
Merged-chr5-66138825-4	chr5	66138737	66138937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	12141.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	6.93327895287991	6.88590974177427	6.84431398881499	7.08692713678801	6.51592453278002	6.43935107391267	6.72704965696106	6.45142306344147	-0.585613473973217	0.00455866619070713	0.0443515395689385
Merged-chr10-14531245-4	chr10	14531122	14531322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002268, intron 2 of 24)	intron (NM_001002268, intron 2 of 24)	13814.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	6.02301204411693	6.10219679934719	6.37273616224253	6.26392309149755	6.22608334346183	6.30663330841166	6.2530074064685	5.87844786442479	-0.0358444441346154	0.881617940191417	0.955384724180766
Merged-chr10-61475715-4	chr10	61475616	61475816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153542)	promoter-TSS (NM_153542)	-117.0	NM_153542	216011.0	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	7.76511622071337	7.90184436564827	7.86679388284972	7.97104225206955	7.87963393169232	7.82612557311197	8.20312622431011	7.8688814970519	0.09038941552193	0.601475676281125	0.827117659280427
Merged-chr4-63385977-4	chr4	63385868	63386068	+	969.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 6 of 21)	intron (NM_001045514, intron 6 of 21)	12272.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	4.93587040733921	4.83408664315431	4.63238287607601	4.68389315001884	5.18896166878871	4.92939751445895	4.80792795419697	4.75200326754488	0.349266495194969	0.301928474343985	0.614185558438755
Merged-chr7-19715705-4	chr7	19715572	19715772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016871)	promoter-TSS (NM_016871)	-243.0	NM_016871	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	9.36560510713138	9.57943538983853	9.56072843200948	9.35300509497635	9.32237735604029	9.56166698934905	9.43870398062981	9.41066726263609	-0.0406545675454923	0.778384965490416	0.913734910277541
Merged-chr19-53449368-4	chr19	53449290	53449490	+	854.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028427, exon 5 of 10)	non-coding (NR_028427, exon 5 of 10)	15406.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	4.74950704022095	4.59297973647656	4.1417682422633	4.69820671993752	3.36504409660819	3.48307128932716	3.56817427908453	3.50878672008414	-3.46476686822786	1.0290937574746e-09	6.6050373817209e-08
Merged-chr11-63131494-4	chr11	63131378	63131578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008885)	promoter-TSS (NM_008885)	21.0	NM_001302255	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	6.84471309697415	7.08400911771102	6.679131736836	7.01764467593099	6.77903797946267	6.88942187240656	7.6314607190896	7.20776501097244	0.340075196484913	0.170912279194889	0.464043527647734
Merged-chr5-67306999-4	chr5	67306911	67307111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310629)	promoter-TSS (NM_001310629)	56.0	NM_001310629	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	7.73162753478302	7.94915001975073	8.01844158453697	7.8811132046575	7.65449720272374	7.47411038289671	7.62113566243572	7.57435047907953	-0.409144471504684	0.0154108531990914	0.10691480072816
Merged-chr7-19217719-4	chr7	19217624	19217824	+	973.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175668, intron 1 of 1)	ID4_|SINE|ID	5186.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	5.24167279919285	5.29182683123913	5.71607736837937	5.51821323230367	5.12307401460505	4.88178110126598	5.24799962986829	5.57331020298053	-0.408534107958607	0.202730649170573	0.505275565576953
Merged-chr7-27691306-2	chr7	27691206	27691406	+	728.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112731, intron 2 of 5)	B3|SINE|B2	1966.0	NM_001112731	112415.0	Mm.145362	NM_198417	ENSMUSG00000057093	Zfp607b	C030039L03Rik	zinc finger protein 607B	protein-coding	2.93384860292742	2.83676139738493	2.99480821624714	2.57816106179077	3.2296233305394	2.97971833255103	2.98333376854018	2.86933317145569	0.837426098887149	0.183557179027279	0.480611235827945
Merged-chr19-4058776-4	chr19	4058661	4058861	+	858.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001362043, exon 2 of 6)	exon (NM_001362043, exon 2 of 6)	686.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	4.66937688089794	4.22596924128468	4.37735407299639	4.05517444562278	3.86548265022328	4.37577162971515	4.08530403991601	4.4150171732512	-0.353557667768123	0.423847124766862	0.715728070732825
Merged-chr13-55513470-4	chr13	55513371	55513571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026131)	promoter-TSS (NM_026131)	-25.0	NM_001114088	67399.0	Mm.275648	NM_026131	ENSMUSG00000021493	Pdlim7	LMP	PDZ and LIM domain 7	protein-coding	5.57648511590685	5.62735757476409	5.30832024661149	5.42811296230562	5.88966743146723	5.94948638929378	5.4663807410877	5.65186839880024	0.45252544533836	0.101854936353849	0.350255222713201
Merged-chr11-87578427-4	chr11	87578321	87578521	+	909.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361936)	promoter-TSS (NM_001361936)	32.0	NM_001284398	18952.0	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|Pnutl2	septin 4	protein-coding	4.56306066669149	4.46577137640648	4.35737904604969	4.26306138906097	4.60203935756109	4.48613791377834	4.29305455857197	4.482314959123	0.163007353625363	0.662413264183594	0.860025750147184
Merged-chr18-60806704-4	chr18	60806603	60806803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042605, intron 1 of 8)	intron (NM_001042605, intron 1 of 8)	2854.0	NM_010545	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	7.0918556875464	7.33434312617512	6.63547648676412	6.90182719136955	7.39359214870587	7.61342026712779	7.25581258286593	6.98833473091675	0.430765498246672	0.064373807895471	0.269612431432288
Merged-chr10-80313809-3	chr10	80313715	80313915	+	967.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011789, exon 14 of 14)	exon (NM_011789, exon 14 of 14)	6733.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	4.25592650485761	4.24648528370992	4.17220387657204	4.26941002801922	3.82676035243012	4.05534148369291	3.75126883439175	3.98213270629994	-0.904038443531171	0.0325933301464907	0.176880195676812
Merged-chr4-46544523-2	chr4	46544423	46544623	+	934.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 6 of 11)	B3|SINE|B2	-8382.0	NM_029077	74735.0	Mm.240252	NM_029077	ENSMUSG00000039853	Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding	3.28275883965854	3.5401875682258	3.41125896345579	3.38887479493649	3.62218506671542	3.75430919920892	3.51438797434786	3.94994439351235	0.983043650943459	0.0469073076525193	0.222691606176127
Merged-chr1-191138557-4	chr1	191138430	191138630	+	886.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26287.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	4.48546708388721	4.4056525597848	4.75193969692504	5.15588166160115	4.12092932502008	4.22349859208754	4.37919711334109	4.56495360274862	-0.956514333143614	0.022774079115131	0.139423790678086
Merged-chr15-84131651-4	chr15	84131538	84131738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8463.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	5.98312993712205	5.50816702751452	6.19410074427342	6.38585688385816	5.29849034791947	5.629298041604	5.4832281533141	5.8715113781342	-0.793978651053037	0.0108205656620397	0.0835721020919862
Merged-chr11-100343224-4	chr11	100343082	100343282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	8775.0	NM_010257	14459.0	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	6.41294930583	6.30928423530252	6.49294951200072	5.84616027158066	6.26073130400283	5.89346456975516	6.04896947150531	5.96484448771677	-0.327786116870949	0.223064697949077	0.531132387537557
Merged-chr1-161528339-4	chr1	161528245	161528445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33688.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	5.08791372190025	5.54473163933094	5.50866183175106	5.18708350109861	5.40148380100341	5.5471700979938	5.22908507667298	4.76563914603501	-0.130313201383868	0.697009459575541	0.877568124016122
Merged-chr10-88357166-4	chr10	88357058	88357258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027878)	promoter-TSS (NM_027878)	-83.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	7.86182468010752	8.04037882033866	7.95558906475932	7.8401179909034	7.89169911082463	7.77895617398181	7.91736322803987	7.62313048136404	-0.146867917900958	0.383635124919639	0.685496788167566
Merged-chr4-86666965-2	chr4	86666871	86667071	+	582.0	f0_balb.idr|f1_balb.idr	intron (NM_007408, intron 3 of 7)	B1F|SINE|Alu	3088.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	3.37158663924942	3.04511712989072	3.37214285902035	2.75167168731708	2.93032747253417	3.10423045817313	2.70538944440887	2.71132417821604	-1.19780302847224	0.08220869546457	0.31128485660563
Merged-chr15-86185928-6	chr15	86185840	86186040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145475, exon 1 of 13)	5' UTR (NM_145475, exon 1 of 13)	201.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	6.00594973325719	6.05257484282469	6.99975664345029	6.729632005852	6.14366746166849	5.87103921557362	6.24956394005109	6.54969228685998	-0.439209658956912	0.157738096705875	0.444412602336425
Merged-chr5-150259355-4	chr5	150259274	150259474	+	776.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172887)	promoter-TSS (NM_172887)	-556.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	3.62849313679375	3.79268389717197	3.80118197304692	3.65488814036914	3.5782986127093	4.25892421537802	4.23051477803379	4.04345756234184	0.916412567831635	0.0536703386248084	0.241815485059833
Merged-chr7-113378507-4	chr7	113378398	113378598	+	936.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9159.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	5.0824655515087	5.29249477755862	5.08331794017087	5.41462435843334	4.99070093691816	5.0415375647871	5.2726497536931	4.86074576074716	-0.365548354737385	0.24675092771505	0.557996069507865
Merged-chr14-32932372-4	chr14	32932276	32932476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178791, intron 7 of 7)	intron (NM_178791, intron 7 of 7)	-59006.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	5.9788233039307	6.202233749945	6.19607525198211	5.62491945629196	5.91194415639682	6.08941920348037	6.03166173771879	5.0844270802651	-0.281705614862561	0.388254104354305	0.688915268263078
Merged-chr4-9099342-4	chr4	9099246	9099446	+	938.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-169947.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	3.998632354087	4.45502260639449	4.15415846434005	4.12995615552054	4.67093391805179	4.58714197255328	4.08726410998838	3.9969525400477	0.436152508509391	0.321585216932084	0.633215694929564
Merged-chr7-96999124-4	chr7	96999017	96999217	+	830.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153591, intron 5 of 13)	L1Md_F2|LINE|L1	47590.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	4.23083231526604	4.01798737268492	3.94047996042678	4.25663983208003	4.27473700105471	4.06278601113751	4.16893762441793	4.35252472768184	0.235647532749155	0.565420078873585	0.807541819254018
Merged-chr1-131084065-1	chr1	131083965	131084165	+	1000.0	f1_balb.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	13778.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	5.4188368159536	6.00205104918809	4.92757008954636	4.88601712024772	5.74834193725618	6.01199005130262	5.44918574451539	5.12161159008046	0.395826790094282	0.315816555692735	0.627691246688442
Merged-chr3-8964990-4	chr3	8964907	8965107	+	952.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025261)	promoter-TSS (NM_001025261)	-861.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	4.9361397505715	5.00002711053552	4.57885125501485	5.16157555239276	4.70360312660523	4.84479272825787	5.16201579616711	4.89846761589243	-0.088796473241069	0.800031847738311	0.922854364184118
Merged-chr1-16667852-1	chr1	16667752	16667952	+	554.0	f0_c57.idr	intron (NM_027415, intron 2 of 2)	Lx9|LINE|L1	2661.0	NM_026392	70397.0	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	2.96510139948564	2.9928811328165	2.74612143829954	3.11619038871379	3.4951393073502	3.37975550234967	3.14230042711106	3.20971121601826	1.32229203991468	0.030917078158278	0.170751606628497
Merged-chr4-43957385-4	chr4	43957291	43957491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027450)	promoter-TSS (NM_027450)	-311.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	6.73321488115015	6.93937166797582	6.59380346698372	6.29284853150827	6.83373771783232	7.08934615734043	7.1923519777704	6.6376886435022	0.428002322823299	0.0780500418946331	0.302144119868281
Merged-chr14-102982671-5	chr14	102982573	102982773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039592)	promoter-TSS (NR_039592)	-36.0	NM_177715	239217.0	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	8.57173517468479	8.50582479093195	8.74627519519623	8.54772727421428	8.73625615799203	8.89456606536759	8.95312871867863	8.66374607534699	0.278474306178637	0.0717065385843241	0.287646512054419
Merged-chr7-96976208-4	chr7	96976113	96976313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153591, intron 5 of 13)	ORR1D2|LTR|ERVL-MaLR	24686.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	6.43693030955385	6.05179699382031	6.61779021250957	6.70882335116421	5.89668280272474	5.7207644027059	5.84925428829211	6.1037661372206	-0.895768007926855	0.000628780497219505	0.00927008430231714
Merged-chr4-101354615-4	chr4	101354515	101354715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040640, intron 1 of 3)	intron (NR_040640, intron 1 of 3)	832.0	NR_040640	68400.0	Mm.272098	NR_040640	ENSMUSG00000087361	0610043K17Rik	-	RIKEN cDNA 0610043K17 gene	ncRNA	5.9302886140988	6.60202420336509	6.16189489317821	6.46720163216468	6.42860791616374	6.47787884889553	6.49258812435085	6.48931986984235	0.205922779853491	0.39698370794807	0.695569405558829
Merged-chr13-58188661-4	chr13	58188577	58188777	+	635.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026842, intron 6 of 10)	MTE-int|LTR|ERVL-MaLR	26976.0	NM_152234	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	3.82398958526743	3.89916587251509	3.37936273817106	3.57471219050304	3.78232286820125	3.55909266241198	3.76056295055873	3.72459661177208	0.0937174417413888	0.848202125927431	0.942625689889496
Merged-chr6-89364574-3	chr6	89364472	89364672	+	938.0277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1959.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	4.48049936137498	4.42346332451197	4.73149890170169	4.31613198102271	4.27784898877515	4.52928197708648	4.1514667696659	4.00637415110209	-0.55458137468003	0.172289359574598	0.465607080487109
Merged-chr5-17842259-4	chr5	17842154	17842354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	-6358.0	NM_007643	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	6.37873219082542	6.33021703154229	6.41411887361832	6.76102998095962	6.06541358461891	6.05367088818593	6.20073017455588	6.14763132815728	-0.578493241564628	0.0145481922957716	0.10263909004071
Merged-chr2-48690804-4	chr2	48690697	48690897	+	979.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123312.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	4.66087720270118	4.35870455548645	5.10798154908623	5.3558463801621	4.81335942193571	4.46887559138264	4.82962012726037	4.95184649849153	-0.342688614110306	0.410923386989427	0.706273206869081
Merged-chr5-63811976-4	chr5	63811886	63812086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029554)	promoter-TSS (NM_029554)	-509.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	5.11480603137423	5.2659016867449	4.84867229090083	5.33646796021428	5.41926086844884	5.59268697655557	5.18952331169725	5.36169564711246	0.407480814487886	0.187085210335192	0.485314267518811
Merged-chr2-93046225-4	chr2	93046163	93046363	+	828.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177536)	promoter-TSS (NM_001177536)	-119.0	NM_001177536	100042784.0	Mm.102816	NM_001177536	ENSMUSG00000075028	Prdm11	8030443D09Rik|AA163972|Gm707	PR domain containing 11	protein-coding	4.50153757952361	4.37875027391172	4.24190343187332	4.50200341492378	4.42849280573857	4.36892551244011	4.17541980380449	4.61169369463511	-0.0245495901222012	0.94880365916239	0.981597588051333
Merged-chr2-140170643-4	chr2	140170530	140170730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081090)	promoter-TSS (NM_001081090)	-16.0	NM_027093	69487.0	Mm.287921	NM_027093	ENSMUSG00000027384	Ndufaf5	2310003L22Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 5	protein-coding	7.15508323551777	7.35587045620297	7.26936034479954	7.59366127188885	7.34519636647213	7.44636839221887	7.31681185405861	7.54497839524113	0.0612025564855136	0.750892676449721	0.901891036911221
Merged-chr9-44510227-4	chr9	44510123	44510323	+	948.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030256, exon 9 of 9)	3' UTR (NM_030256, exon 9 of 9)	11087.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	3.98150531214996	4.06229051473355	3.82680872280704	3.90615560081839	3.97000233701916	4.3311878712353	3.91605109729516	3.93007915386006	0.26382146118348	0.540811674893805	0.792982745230616
Merged-chr17-80553397-4	chr17	80553296	80553496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360144, intron 3 of 9)	intron (NM_001360144, intron 3 of 9)	10438.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	5.62040902436961	5.73744345439679	5.25836106111823	5.79029258871868	5.97000517943122	5.76977906696588	5.45503646073381	5.61742708570625	0.158600203859925	0.584951907614359	0.817912135003528
Merged-chr17-6008038-6	chr17	6007950	6008150	+	824.972229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001113351, exon 7 of 25)	exon (NM_001113351, exon 7 of 25)	470.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	3.97498683133137	3.26519079859923	3.55106263347988	3.61305392117789	3.43826673241757	3.55037319443652	3.48068544196552	3.8469844216571	-0.112454972990906	0.83255538687793	0.935918062519097
Merged-chr5-65490015-4	chr5	65489913	65490113	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133697, intron 1 of 4)	intron (NM_133697, intron 1 of 4)	2822.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	5.51200707558499	6.1379695091635	5.94927111195312	5.89477020118324	6.10344656571634	5.53207324927506	5.96130822983553	5.85510110625479	-0.00961828959137326	0.972594316365206	0.990135456456978
Merged-chr8-35469169-3	chr8	35469064	35469264	+	898.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026067, exon 7 of 7)	exon (NM_026067, exon 7 of 7)	26369.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	4.26088551799011	4.27448544816705	3.99820550760525	4.40220827703532	3.95933304305778	3.90760751927134	3.59126241218127	3.72644848893072	-1.20363623318325	0.00853599417102813	0.0703221677198624
Merged-chr11-71996127-4	chr11	71996006	71996206	+	858.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41403.0	NM_053245	114230.0	Mm.95707	NM_053245	ENSMUSG00000040554	Aipl1	A930007I01Rik	aryl hydrocarbon receptor-interacting protein-like 1	protein-coding	3.77547860080454	3.88754816579344	3.9244890576809	4.2145426890419	3.74411626330894	3.59873758949555	3.86055505080525	3.66465406545931	-0.737611210157057	0.116834641267548	0.378196958969613
Merged-chr2-152105511-4	chr2	152105408	152105608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029688)	promoter-TSS (NM_029688)	-16.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	7.52239171101427	7.48964573643417	7.48768198494855	7.27578905148723	7.32655224505412	7.45673208097715	7.31629575655852	7.13804239898354	-0.168068612585219	0.360194148216882	0.66568674445473
Merged-chr15-101318318-4	chr15	101318201	101318401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25089.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	5.68959743721662	5.90652920484978	5.69059219965565	5.56043218437004	5.67492026397742	5.733526876236	5.44342937623548	5.85184231747926	-0.0444333896888757	0.868547025127816	0.950762137632278
Merged-chr17-50415475-4	chr17	50415393	50415593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16E1|LTR|ERVL	-94054.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	6.31502318943938	6.08267737932025	6.33388599618537	6.54882466056666	6.09050389131784	6.14594593435571	5.93808143707336	6.25686497408398	-0.353332926038208	0.143201998470395	0.421329340516185
Merged-chr11-102309105-4	chr11	102308992	102309192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001044383, intron 12 of 19)	CpG	8195.0	NM_001044383	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	7.06557907908554	7.36446945137683	6.79989036338509	7.0820741423667	7.59548547390605	7.66931823649289	7.38124474435496	7.63979891177559	0.642375482664637	0.00123249206899015	0.0159013146598967
Merged-chr4-133209566-4	chr4	133209458	133209658	+	841.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008154, exon 2 of 2)	3' UTR (NM_008154, exon 2 of 2)	2978.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	4.18632718576701	4.35188280339501	3.94845907191057	4.02778497294062	4.07931765688802	4.12280944705199	4.03209779023726	3.99751022483234	-0.196036619936236	0.63889911911079	0.847409779354821
Merged-chr6-148609109-4	chr6	148608969	148609169	+	945.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045867, exon 3 of 3)	non-coding (NR_045867, exon 3 of 3)	5240.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	4.61324708207992	4.51362074167871	4.75785164864508	4.55176713763381	4.43016396836389	4.23387881571903	4.7347529139377	4.35937564967614	-0.342702930602182	0.359687710288182	0.665443059431823
Merged-chr3-67512998-4	chr3	67512900	67513100	+	963.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164763, intron 1 of 5)	intron (NM_001164763, intron 1 of 5)	2523.0	NM_001164763	109222.0	Mm.38002	NM_001164763	ENSMUSG00000049404	Rarres1	5430417P09Rik|AI662122	retinoic acid receptor responder (tazarotene induced) 1	protein-coding	5.08093547449852	5.17801682032992	4.86255224677914	5.26196560275742	5.23851591520924	4.91740238016554	5.29874399303587	5.17518651806026	0.0969000027624439	0.757358323941208	0.904677695365828
Merged-chr19-43673787-4	chr19	43673697	43673897	+	791.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145156, intron 1 of 3)	intron (NM_145156, intron 1 of 3)	1084.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	3.6835377503006	3.40043168568466	3.73571200015415	3.80225974863975	3.97000590930428	3.56889366806145	3.61620325828372	3.83082155599049	0.281707556876733	0.566355522445621	0.807861795964639
Merged-chr5-123128594-4	chr5	123128530	123128730	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175092, intron 2 of 4)	intron (NM_175092, intron 2 of 4)	3999.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	5.10552085720544	4.89560995548042	4.29316379818444	4.68048178283606	4.60847442230358	4.95460598929025	4.72170981733637	4.77856163370261	-0.0147382003448155	0.968709983671132	0.988762939668968
Merged-chr11-72041937-4	chr11	72041823	72042023	+	822.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144526)	promoter-TSS (NM_144526)	-579.0	NM_144526	109212.0	Mm.33118	NM_144526	ENSMUSG00000020808	Pimreg	2610008F03Rik|6720460F02Rik|AI115087|CATS|Fam64a	PICALM interacting mitotic regulator	protein-coding	4.02026622781937	4.08850601451663	3.81815158780993	3.78492783570641	4.01044228283487	3.93875372963528	4.1353174122091	4.01843436995167	0.27877770190643	0.514263171415702	0.776963161444587
Merged-chr2-73491721-4	chr2	73491639	73491839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-5986.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	5.41935612762997	6.09940012997009	6.14222729165835	5.46357673558935	6.06261364938739	6.05282839993277	5.77863684432308	5.38384314565621	0.053199343783323	0.869740722055518	0.951086918748906
Merged-chr18-53845615-1	chr18	53845515	53845715	+	694.666687	f0_balb.idr	Intergenic	Intergenic	-16498.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	3.23666634481127	3.2052005093888	3.23712805596548	3.21023015815673	2.72536129128434	2.9006513381446	2.99190280099797	3.23526078306046	-1.04756474942823	0.0887286056693731	0.325094632364251
Merged-chr15-77931829-4	chr15	77931731	77931931	+	956.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2837.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	4.86641018052905	5.18406660728227	4.86719822893746	5.34654787544758	4.9400750116415	4.96492810207494	5.38586977387661	5.55658099902016	0.251245389931111	0.471897192591362	0.750160136489651
Merged-chr2-128855607-4	chr2	128855512	128855712	+	949.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8320.0	NM_024237	70370.0	Mm.5107	NM_024237	ENSMUSG00000027386	Fbln7	1600015H20Rik|AI464334|TM14	fibulin 7	protein-coding	5.01856285006062	4.76232907236011	4.98687486655372	5.26367575270637	4.64604043994201	4.69405860484603	4.62798575873418	5.01597163888995	-0.570745158408896	0.101289588491223	0.349273541514549
Merged-chr9-45959818-4	chr9	45959730	45959930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4581.0	NM_172257	214597.0	Mm.379345	NM_172257	ENSMUSG00000034908	Sidt2	B930096O19|BC023957|CGI-40	SID1 transmembrane family, member 2	protein-coding	7.26339578221095	7.07100729434161	6.8163873713686	7.30437522551458	7.18903855155509	7.44116863961043	7.06115354543296	7.17293592605345	0.113775042307398	0.58224126337901	0.816501953640427
Merged-chr4-11031934-4	chr4	11031850	11032050	+	741.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24331.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	3.68929813727788	3.89435489496785	3.79547420549616	4.24743221382859	3.68637094340053	3.56460215535283	3.4379464500649	3.98123977746832	-0.743823383201254	0.145283107718716	0.424709585455561
Merged-chr5-103802699-3	chr5	103802596	103802796	+	778.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133919, intron 3 of 19)	intron (NM_133919, intron 3 of 19)	48123.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	3.36123380813947	3.48954960535654	3.30045314441792	3.81096993784047	3.62188452621258	3.4739641441992	3.46270342079949	3.36000004387437	-0.120691040146973	0.822478635490255	0.932143478460956
Merged-chr7-106760194-4	chr7	106760109	106760309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6823.0	NM_146602	258595.0	Mm.377585	NM_146602	ENSMUSG00000059087	Olfr698	MOR283-3	olfactory receptor 698	protein-coding	6.49072762560293	6.26218031801516	6.69329687064048	6.46727972905744	6.66932433857564	6.40930998496468	6.58582546963918	6.5996237300626	0.135337228205389	0.534991464294244	0.789536966618979
Merged-chr1-60668488-3	chr1	60668382	60668582	+	842.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77906.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	2.82072095533339	2.96665452220655	2.93796456411303	2.94289691533431	2.50376450836344	2.72758645936511	2.68433866871807	2.69137066454827	-1.37554656131917	0.0393708747398041	0.199827402531697
Merged-chr8-94917613-4	chr8	94917498	94917698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033533, intron 1 of 8)	CpG	500.0	NM_001033533	234582.0	Mm.277871	NM_001033533	ENSMUSG00000063605	Ccdc102a	BC027663|Gm586	coiled-coil domain containing 102A	protein-coding	7.42434887487694	7.08396867162972	7.30449647454022	7.45433049149251	7.3879396113545	7.40539115923806	7.67841567649256	7.38140945080631	0.185054341965181	0.332850129668001	0.643767713157944
Merged-chr14-52257889-4	chr14	52257773	52257973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-20301.0	NM_201637	67772.0	Mm.289934	NM_201637	ENSMUSG00000053754	Chd8	5830451P18Rik|AU015341|Duplin|HELSNF1|mKIAA1564	chromodomain helicase DNA binding protein 8	protein-coding	8.19256600683711	8.08125074615003	8.17556010922687	8.2941953527016	8.35524839287733	8.371582415562	8.50642393977297	8.3153086761346	0.249218443543944	0.105924780844369	0.358534403714934
Merged-chr3-87033605-4	chr3	87033497	87033697	+	930.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34257.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	4.210061714933	4.32671426320981	3.7861512711864	4.12296419586693	4.21002745667858	4.38281734639571	3.99886609700723	4.56129188444394	0.428422272339542	0.320641105428685	0.632430335149585
Merged-chr6-148534612-4	chr6	148534555	148534755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79654.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	7.81675220348299	7.75147579996596	8.12223205668197	8.0101785194235	7.7373475316981	7.86672045308789	7.84706813762298	7.75803210228609	-0.174764651146896	0.30949767859659	0.621751158573599
Merged-chr4-117042703-4	chr4	117042608	117042808	+	929.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111277, intron 3 of 11)	intron (NM_001111277, intron 3 of 11)	23306.0	NM_001111277	108067.0	Mm.34612	NM_175135	ENSMUSG00000028683	Eif2b3	1190002P15Rik	eukaryotic translation initiation factor 2B, subunit 3	protein-coding	4.05370166541659	3.8474980714893	4.752892045119	3.93678863405871	3.97129645860027	3.9554997107637	4.39156349307709	4.5570097587529	0.118765607485456	0.809381084542503	0.926399566100386
Merged-chr11-94564584-4	chr11	94564460	94564660	+	872.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007689)	promoter-TSS (NM_007689)	-487.0	NM_007689	12643.0	Mm.440523	NM_007689	ENSMUSG00000039084	Chad	SLRR4A	chondroadherin	protein-coding	4.67089069985342	4.74626082241126	4.26219821628961	4.42933582591828	4.44721865485225	4.1794462482041	4.54062319240331	4.21059826510776	-0.412714119066335	0.296576316989174	0.608515340202715
Merged-chr14-45677415-4	chr14	45677290	45677490	+	989.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19247.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	7.05617413738809	7.25746687851254	7.66516825878636	7.29500683454345	5.97279398249212	6.02758727268589	5.99711510821355	5.68435113684579	-2.04261751237057	1.77849331436365e-17	4.24803273902987e-15
Merged-chr17-29488707-3	chr17	29488606	29488806	+	966.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2339.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	4.30027959559009	4.76805262542413	4.42950880631327	4.2656588838469	4.14588748085172	4.28468761854568	4.36806738502063	4.2049707177575	-0.48514846838047	0.227255670027307	0.535942990420572
Merged-chr17-69396415-4	chr17	69396337	69396537	+	972.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12633.0	NM_009547	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	4.73012742455388	4.67562110261388	4.86734981751984	4.45345405571857	4.57213172182835	4.6257172803038	4.13250139377685	4.72773689362613	-0.316935345992047	0.409632600448706	0.705214871926678
Merged-chr11-106613221-4	chr11	106613107	106613307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198292)	promoter-TSS (NM_198292)	-277.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	7.73886570957655	7.72569848633918	7.66679235886097	7.62681669715376	7.66142733185984	7.75720592069037	7.65420114778202	7.78908334959829	0.0361703267276404	0.824348243194606	0.932613065076433
Merged-chr16-50299232-4	chr16	50299117	50299317	+	928.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 3 of 16)	intron (NM_027444, intron 3 of 16)	133172.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	4.69320403272146	4.92164295814297	4.80313650495106	4.75872490873813	4.43334734122291	4.70699738451235	4.46829221527745	4.52925414142946	-0.575237478624433	0.0990225581969463	0.344998858047011
Merged-chr3-108771246-2	chr3	108771146	108771346	+	587.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177859, intron 6 of 11)	intron (NM_177859, intron 6 of 11)	31588.0	NM_177859	329738.0	Mm.72322	NM_177859	ENSMUSG00000049565	Aknad1	4921525H12Rik	AKNA domain containing 1	protein-coding	3.23432654042499	2.74847771612195	2.82868243243387	2.81059187672478	3.00010953678376	3.00391656321931	3.00710521253938	3.01699393259646	0.398793845009969	0.512417799125777	0.775817701566463
Merged-chr13-91636198-4	chr13	91636094	91636294	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 4 of 15)	T-rich|Low_complexity|Low_complexity	-105327.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	5.50922413241759	5.22880471162519	5.39966196656357	5.45398377722285	5.31146251851907	5.13676150729139	5.58327437982095	5.58316590562123	0.0215244227242281	0.940958988009795	0.978676631829834
Merged-chr9-7871871-4	chr9	7871771	7871971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	1299.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	6.79880632090709	6.8366593231996	7.05917618289697	6.61995697739524	7.39095792958331	6.96271815398852	7.04664867655031	6.55853418590014	0.284305877721499	0.239111322322464	0.549600505217823
Merged-chr2-51073295-3	chr2	51073195	51073395	+	776.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75816.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	3.52681985290634	3.62315455767603	3.47055241749822	3.50220543382152	3.56644585606938	3.8984736887639	3.33789776543556	3.52537587104556	0.205064227888033	0.682218198514829	0.869682098720609
Merged-chr1-128359716-4	chr1	128359618	128359818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313695)	promoter-TSS (NM_001313695)	-13.0	NM_008567	17219.0	Mm.4933	NM_008567	ENSMUSG00000026355	Mcm6	ASP-l1|D1Wsu22e|Mcmd6	minichromosome maintenance complex component 6	protein-coding	7.31576729555989	7.42033002117314	6.98742671423982	7.36740130657239	7.41376688706698	7.30484182043911	7.59765637678437	7.14623781764277	0.118991093546336	0.552815609081208	0.799873237323185
Merged-chr11-117725117-4	chr11	117725014	117725214	+	871.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 5 of 21)	intron (NM_198022, intron 5 of 21)	54534.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	4.32280101614137	4.25072737666234	4.55449177396947	4.58173798781304	4.00768663214283	4.31664723754406	3.7989117815947	4.09016402060943	-0.953990999888107	0.0236939514493276	0.143130931868937
Merged-chr1-143702426-2	chr1	143702326	143702526	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145991, intron 1 of 16)	intron (NM_145991, intron 1 of 16)	467.0	NM_145991	214498.0	Mm.156727	NM_145991	ENSMUSG00000026361	Cdc73	8430414L16Rik|C130030P16Rik|C81219|Hrpt2	cell division cycle 73, Paf1/RNA polymerase II complex component	protein-coding	4.83796502011091	5.02173155983295	5.54139288716714	4.87929849299069	4.76549393829649	4.76302607325948	5.09350157021207	5.14632267341081	-0.274406538489961	0.443115547610969	0.729779110682633
Merged-chr12-102426530-4	chr12	102426435	102426635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	13278.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	7.80193508560272	7.80451056171071	7.97399314975022	8.13789538744191	7.73082045160432	7.60095945070152	7.7345876843606	7.37591097753224	-0.420521762637171	0.0227717457822973	0.139423790678086
Merged-chr1-160792316-3	chr1	160792138	160792338	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013862, intron 1 of 20)	CpG	700.0	NM_013862	29809.0	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	3.80873068874777	3.74415622245437	4.07361360911081	3.762704816494	3.49932234848771	3.59184816787921	3.6388316157823	3.75710948810653	-0.696919352493715	0.14263978393625	0.420382582450082
Merged-chr16-57502434-4	chr16	57502317	57502517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-46825.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	8.3491948378985	8.6404837473648	8.5854801124885	8.36562024736563	8.14820226293606	8.3736742171359	8.17535388345876	7.9492126268417	-0.407256392426844	0.0177523885937855	0.118093202590379
Merged-chr8-105254284-4	chr8	105254178	105254378	+	989.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271915, exon 1 of 1)	exon (NM_001271915, exon 1 of 1)	875.0	NM_001271915	97440.0	Mm.489600	NM_178879	ENSMUSG00000069920	B3gnt9	3-Gn-T9|B3gnt9-ps|BGnT-9|C76565|C76566|beta-1|beta3Gn-T9	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9	protein-coding	5.0899244762679	5.02570711330369	4.84427917295969	4.87722568918099	4.99047044318991	5.05768175988567	5.2431356520746	4.98753946356118	0.222391549601646	0.475261913233549	0.752170333885464
Merged-chr11-69901017-4	chr11	69900936	69901136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316696)	promoter-TSS (NM_001316696)	-50.0	NM_027419	70419.0	Mm.272859	NM_027419	ENSMUSG00000018570	2810408A11Rik	1700019L01Rik|4930470J18Rik	RIKEN cDNA 2810408A11 gene	protein-coding	6.7939488033661	6.56296800241369	6.3770690025282	6.39778350565813	6.69740480670524	7.13656585460607	6.58538686496938	6.76266537925882	0.38856132449972	0.0921512850748986	0.331998961472196
Merged-chr17-34188229-2	chr17	34188129	34188329	+	933.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013585)	promoter-TSS (NM_013585)	673.0	NM_013683	21354.0	Mm.482076	NM_013683	ENSMUSG00000037321	Tap1	ABC17|APT1|Abcb2|Ham-1|Ham1|MTP1|PSF1|RING4|TAP|Tap-1|Y3	transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	3.48407045312782	3.49820897718925	3.16757159040122	3.1435552370864	3.60934297077204	3.81309888089212	3.52532398957853	3.73752653174814	1.15772310345727	0.0237499790105642	0.143372042743868
Merged-chr3-153797763-1	chr3	153797663	153797863	+	855.3333130000001	f0_balb.idr	Intergenic	Intergenic	-5676.0	NR_045801	70594.0	Mm.491050	NR_045801	ENSMUSG00000062046	5730460C07Rik	-	RIKEN cDNA 5730460C07 gene	ncRNA	4.18599213017175	4.11931068443672	4.34596578580257	4.337832710959	3.70512791796462	3.51268173562061	3.98719963556804	4.00190452047403	-1.20330612017963	0.00870029710090967	0.071403026328335
Merged-chr17-84328659-3	chr17	84328561	84328761	+	951.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 28 of 37)	intron (NM_183021, intron 28 of 37)	137547.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	4.00121509252664	3.70391211666403	4.31583181889479	4.52396944534555	3.87029742207913	4.17636319812088	4.29555342498289	3.89388594746307	-0.298750687742937	0.535503114187063	0.789765706629649
Merged-chr13-47225524-4	chr13	47225414	47225614	+	922.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 3 of 7)	intron (NM_146042, intron 3 of 7)	31511.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	4.0211395774196	4.20206396685911	4.02172807440101	4.12589876054442	4.22970769666306	3.74734164748723	3.73955101814918	4.31993530630259	-0.136373370854307	0.764468348735261	0.907688206355961
Merged-chr8-69938499-4	chr8	69938395	69938595	+	850.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 2 of 12)	intron (NM_001286450, intron 2 of 12)	35888.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	4.16898592248792	4.03583305545813	4.12517374748376	3.8901304466561	3.96334707118998	3.94165953473397	4.2344419299664	4.16701435572894	0.086932546870132	0.836323945767969	0.937720204739175
Merged-chr16-32333357-3	chr16	32333252	32333452	+	792.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177633, intron 1 of 10)	UCON11|Unknown|Unknown	1100.0	NM_177633	224111.0	Mm.31275	NM_177633	ENSMUSG00000053774	Ubxn7	A630090P18|AI196514|Ubxd7|mKIAA0794	UBX domain protein 7	protein-coding	3.28101133537813	3.1649095328095	3.22509797113251	3.24210330312742	3.51157225096602	2.93021409477722	3.21318603469641	3.2234320279608	0.067223345154855	0.906869952608235	0.965451635607263
Merged-chr6-122593521-4	chr6	122593425	122593625	+	984.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031159, intron 3 of 7)	intron (NM_031159, intron 3 of 7)	8919.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	5.25105200832104	4.98317885912647	4.86431235078315	5.28220746501544	5.38373452827166	5.29901312383164	5.5201492114833	5.12061073031231	0.403689406913699	0.194478847065914	0.494891206434022
Merged-chr10-127591148-4	chr10	127591048	127591248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 11 of 88)	intron (NM_008512, intron 11 of 88)	30000.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	8.63887821888223	8.78915196868656	8.8332546078635	8.8318501584063	8.2336627283776	8.28253981950606	8.54635246960435	8.51356657434513	-0.476462750991855	0.00269678489065093	0.0293912803141391
Merged-chr8-81806980-4	chr8	81806881	81807081	+	989.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024617, intron 7 of 24)	intron (NM_001024617, intron 7 of 24)	464419.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	5.54580054354347	5.28604520018156	5.3337518068854	5.32209505655189	4.83387951038636	5.06700692389857	5.41731363495503	5.27066812897873	-0.395684912714289	0.205237287597046	0.508859472252119
Merged-chr2-10010455-3	chr2	10010371	10010571	+	942.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027748, intron 2 of 6)	intron (NM_027748, intron 2 of 6)	38138.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	3.78024653224505	3.54232798448263	3.35317711710158	3.63899177055535	3.4830956714362	3.46689117425198	3.80798555379928	3.41329624792547	-0.122808779012682	0.809208510136	0.926362488588753
Merged-chr1-93445588-4	chr1	93445479	93445679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133808, intron 1 of 27)	CpG	122.0	NM_001301364	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	7.13466608267378	7.70982976454106	7.42533262499656	6.83509227440674	7.6057973908361	7.78033154848298	7.14717210450434	7.17818873661146	0.194924344804759	0.446225678889933	0.731975884902898
Merged-chr17-8868088-4	chr17	8867980	8868180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 1 of 21)	intron (NM_001347321, intron 1 of 21)	18095.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	6.38830669326786	5.95441971055427	6.15721750551613	6.52772750902333	6.08752927635021	5.55264468015257	6.10596220339287	5.91617503879237	-0.531579019795186	0.0508513138517648	0.233881214051096
Merged-chr15-89355699-4	chr15	89355604	89355804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271601)	promoter-TSS (NM_001271601)	-15.0	NR_073376	52683.0	Mm.143167	NM_001115132	ENSMUSG00000008690	Ncaph2	-	non-SMC condensin II complex, subunit H2	protein-coding	7.34256517779998	7.42630384990978	7.12171705346216	7.10041203458975	7.41099343532902	7.55088785292194	7.459856747997	7.32850643830933	0.25449614208451	0.171696965908836	0.465087374685055
Merged-chr7-16052039-4	chr7	16051964	16052164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19781.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	5.45888333130925	5.61084779764384	5.45982251292385	5.66479892864328	5.54044188928809	6.04087733598816	5.8807126226422	5.70141692240372	0.384743040046827	0.16022378580427	0.448239942214445
Merged-chr9-65200790-4	chr9	65200693	65200893	+	995.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-13897.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	5.21840218327461	5.25007489280468	5.12665492113335	4.84321134861407	4.91711064725578	5.26751845144939	4.96754987574083	5.0907178272636	-0.0842406995176154	0.793962568848596	0.920260968707275
Merged-chr8-68092881-4	chr8	68092780	68092980	+	754.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118306.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	3.99989735685595	3.70586270582218	3.60523446931766	4.31330487754718	4.08213988233923	4.12389421625118	4.32000349661131	3.99810715570074	0.467365067088201	0.336165340011922	0.646244323954596
Merged-chr15-88733332-4	chr15	88733234	88733434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033274, intron 1 of 12)	intron (NM_001033274, intron 1 of 12)	885.0	NM_001033274	223770.0	Mm.254438	NM_001033274	ENSMUSG00000022387	Brd1	1110059H06Rik|AI316859|mKIAA4191	bromodomain containing 1	protein-coding	4.97754936586761	5.47364077205973	5.27133953064848	4.87794628380836	5.15331962899701	4.9611009129922	5.18602318961495	5.14585174946907	-0.0831658451577263	0.7997158604097	0.922665648246429
Merged-chr8-3661038-4	chr8	3660952	3661152	+	871.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-4710.0	NM_026985	69189.0	Mm.175176	NM_026985	ENSMUSG00000013974	Mcemp1	1810033B17Rik	mast cell expressed membrane protein 1	protein-coding	3.53897224844677	3.72090371584504	3.77059207280991	3.68605804232572	3.98784988495235	4.08963927070696	3.94932698509333	3.87022337508808	0.839548179085548	0.0566903161625885	0.249383443629189
Merged-chr19-28664059-3	chr19	28663948	28664148	+	588.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175459, intron 2 of 10)	intron (NM_175459, intron 2 of 10)	-14176.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	3.316149622135	3.14181326928186	3.26433577336359	3.14495892504754	2.95606182966444	2.93049726722677	3.25097589815706	3.02925462657674	-0.679706079692733	0.239807467500521	0.550319364516864
Merged-chr7-113770534-4	chr7	113770439	113770639	+	958.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145584, intron 1 of 15)	intron (NM_145584, intron 1 of 15)	4541.0	NM_145584	233744.0	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	4.59124131703913	4.3984143338681	4.88825402377866	5.02707106836725	4.85464695241887	4.33614365074266	4.79722610787671	4.66971720221416	-0.159250611055827	0.681477325490891	0.86940916653104
Merged-chr5-113772734-4	chr5	113772644	113772844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016926)	promoter-TSS (NM_016926)	-68.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	7.21481696343774	7.42732652792485	6.9392747624427	6.92517745650109	7.67822092443611	7.6839740210569	7.61307505672921	7.28764711437236	0.589226193042606	0.00473267135483806	0.0456335429918746
Merged-chr15-31350128-4	chr15	31350035	31350235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	17624.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	7.22972559106617	6.81782297908871	7.73420348956654	8.00830469645417	6.83033886573273	6.95728688548052	6.96985015042099	7.02612550867167	-0.800162107900791	0.00303259482003557	0.0322511678911269
Merged-chr2-14242581-4	chr2	14242449	14242649	+	960.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 2 of 29)	intron (NM_008625, intron 2 of 29)	13135.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	4.99296568524983	4.70428862582304	5.43090207326075	5.19542159400228	4.62047584649996	5.09772568268413	5.13141388914498	4.99041661466081	-0.276228718083985	0.437500025379285	0.725725477538789
Merged-chr3-31138649-4	chr3	31138566	31138766	+	884.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-11254.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	4.11649384331218	4.35701098531742	4.16844464008587	4.19874962172921	4.91285568301308	4.34549831453829	4.29235708180134	4.51648737849098	0.793917467495316	0.048057114669827	0.226204031548976
Merged-chr3-96294022-4	chr3	96293920	96294120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010186)	promoter-TSS (NM_010186)	-51.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	6.46075871707673	6.25056658102564	6.78075228667137	6.60308259326424	6.20710724722411	6.62109856032942	6.79848024536616	6.55688296433662	0.0231961996775103	0.924180814003111	0.97193147601914
Merged-chr14-32939379-3	chr14	32939267	32939467	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001361602, exon 6 of 6)	3' UTR (NM_001361602, exon 6 of 6)	-52015.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	2.91846826959861	2.91420858936372	3.08495723001326	2.95633170776444	2.43927855685611	2.76422258484074	2.9076164808151	2.65699032920449	-1.32374221622369	0.0564049369563469	0.248689730402367
Merged-chr6-140624794-4	chr6	140624687	140624887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309437)	promoter-TSS (NM_001309437)	-122.0	NM_001309437	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	5.37734206210409	6.70284751661014	5.75454392594018	5.09156902400234	6.3112544099417	5.98099571023953	5.62097121753584	5.47132801489809	-0.0224295924498248	0.971345196938012	0.989667458652484
Merged-chr1-191085104-4	chr1	191084919	191085119	+	971.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_198654)	TTS (NM_198654)	-13395.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	3.58334167423755	3.73716912366572	3.80428303095587	3.07021692869527	3.70076894254352	4.20543291296884	3.56982362337905	4.11530438710883	1.01410549420506	0.0647076294501412	0.27045357349569
Merged-chr4-118360963-1	chr4	118360863	118361063	+	549.0	f0_balb.idr	intron (NM_026601, intron 3 of 8)	intron (NM_026601, intron 3 of 8)	964.0	NR_003946	68180.0	Mm.193212	NM_026601	ENSMUSG00000006395	Hyi	2700033B16Rik|6430559E15Rik|HT036	hydroxypyruvate isomerase (putative)	protein-coding	3.10613587553662	3.06087802200125	3.00292652759918	2.7961746810139	2.78043133709116	2.58105557240489	2.54893827017253	2.47626446136806	-1.94170410760145	0.00927920223686877	0.0748085101390964
Merged-chr5-45669815-4	chr5	45669699	45669899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019438)	promoter-TSS (NM_019438)	-91.0	NR_073433	69788.0	Mm.381492	NR_073433	ENSMUSG00000104986	1600023N17Rik	AV119442	RIKEN cDNA 1600023N17 gene	ncRNA	8.78988729942284	8.66212928485376	8.39216754101442	8.82116054344896	8.63710727782151	8.43288667119408	8.72770549851121	8.07523680362496	-0.232935172402641	0.231279096673009	0.540752717408527
Merged-chr4-117134039-4	chr4	117133937	117134137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013807)	promoter-TSS (NM_013807)	-74.0	NM_001313916	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	8.05377791511754	8.14366337297054	8.09289411715585	7.92700396940576	7.95665578125556	7.93844292208384	7.8312861163971	7.42407151117991	-0.31705127265611	0.0868518374218272	0.321411403548312
Merged-chr9-58249760-4	chr9	58249604	58249804	+	978.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311088)	promoter-TSS (NM_001311088)	82.0	NM_008884	18854.0	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	4.52442324168133	4.89868963546316	4.43862351042761	4.51868581093126	4.43543007315369	4.73872232343625	4.54524588883258	4.52225175080829	-0.106839495651831	0.771834136588606	0.910562259162493
Merged-chr15-94544484-3	chr15	94544377	94544577	+	701.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172437)	promoter-TSS (NM_172437)	817.0	NM_029926	266632.0	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	3.35296495843948	3.28785890788799	3.16555972543335	3.30443949972137	3.34205356573765	3.40730300939743	3.69090294910975	3.61425649880718	0.811536350477337	0.116266493233937	0.377232779738281
Merged-chr14-55098197-4	chr14	55098086	55098286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001303502)	TTS (NM_001303502)	3402.0	NM_153083	105663.0	Mm.319204	NM_153083	ENSMUSG00000045691	Thtpa	AW122966	thiamine triphosphatase	protein-coding	5.6974190311888	6.07434412823991	6.03196303964464	5.99649881834968	6.19881581427044	5.90286868149491	6.19364611296663	5.66690262027156	0.0879937195977239	0.738198494686797	0.896701754212797
Merged-chr3-68709468-4	chr3	68709359	68709559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18035.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	6.24670545803414	6.51961234586622	6.68743118498606	6.30546698681087	6.22304681238127	6.4241290916537	6.23508193550466	6.05457701763091	-0.308392257018974	0.191138146261706	0.490483167955944
Merged-chr3-152122820-3	chr3	152122710	152122910	+	961.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016867, intron 3 of 5)	ORR1C1|LTR|ERVL-MaLR	43090.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	3.72463555400168	3.96809428648841	3.90395229916547	3.46995397787772	3.30445170894604	3.3852629987707	3.38696553660477	3.19933435873828	-1.55157200474141	0.00460708180260878	0.0447194157408823
Merged-chr11-34771393-4	chr11	34771285	34771485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	12520.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	6.45398826495941	6.59154625021848	6.11770025351405	6.51229314242915	6.12244426262719	6.37730712196493	6.28385333730996	6.06965024331882	-0.338347365137826	0.150080168174513	0.432544693302574
Merged-chr4-33282545-4	chr4	33282451	33282651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27760.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	7.46304087538721	7.73993681340021	7.93011770192052	7.14985584711935	7.78148076696816	7.822538180208	7.49353193330943	7.54378334915291	0.0987307027149524	0.656363311800845	0.85658929556191
Merged-chr15-86170853-4	chr15	86170746	86170946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-14882.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	5.45381240092787	5.55096412291165	5.70547416450159	5.72913963566081	5.63929125938815	6.14991383848844	5.90551608292389	5.70143133934463	0.38136100836744	0.162307507483808	0.451478607026065
Merged-chr13-49173253-4	chr13	49173167	49173367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-14280.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	5.56423874008815	5.38230719215812	6.14266525300112	5.37887938256794	5.71731006252252	5.89895690353891	5.7192148360048	5.90432686376734	0.277728208238268	0.354157708474015	0.660907483798357
Merged-chr3-19216465-4	chr3	19216369	19216569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 5 of 7)	intron (NM_001356295, intron 5 of 7)	28174.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	6.14756977603944	6.22915816586433	6.08151840414525	6.79810786782687	6.72984962665338	6.83685615250017	6.65618313351858	6.26871855202176	0.392434676028597	0.150201739162604	0.432790043591146
Merged-chr13-47043390-4	chr13	47043264	47043464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172262)	promoter-TSS (NM_172262)	-135.0	NM_172262	218214.0	Mm.31259	NM_172262	ENSMUSG00000038080	Kdm1b	4632428N09Rik|AI482520|Aof1	lysine (K)-specific demethylase 1B	protein-coding	9.21458057790661	9.38702024576293	9.24024864747103	8.77044039231497	9.27372679053332	9.55798044285135	9.22963368399148	9.13129413424994	0.170816770830506	0.354574071666586	0.661240511610667
Merged-chr12-82240868-4	chr12	82240762	82240962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-70487.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	6.72439006320522	6.32256105575939	6.36339459043687	6.80202513435468	6.84009287438048	6.90123204097804	6.38651414817463	6.63194398496549	0.181069941924318	0.452730159453409	0.737006678705841
Merged-chr2-26561837-4	chr2	26561748	26561948	+	873.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19208.0	NM_178444	353156.0	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	4.3102715876327	4.29880884708543	3.81856242326473	4.02541294258012	4.1379603235067	4.4388387611009	4.11772902986479	4.08544947974844	0.188299773420605	0.657851284460207	0.857579088863969
Merged-chr8-23035456-4	chr8	23035371	23035571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277284, intron 1 of 42)	intron (NM_001277284, intron 1 of 42)	372.0	NM_001277284	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	4.06948558124669	4.0792651961718	4.58258972823037	4.65171824121448	4.8185746411583	5.27126472313802	4.86115185207891	5.12607688467137	1.32517971778425	0.00121049466825357	0.0156686306585962
Merged-chr11-115078526-4	chr11	115078453	115078653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-12878.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	6.2481223812687	6.03613885448754	5.84586017619319	6.05867189048997	6.27719110703739	6.04760203893773	6.21720788117695	5.91450941188178	0.116391609403329	0.633105962643828	0.844432636352907
Merged-chr11-55469454-4	chr11	55469382	55469582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013716)	promoter-TSS (NM_013716)	-270.0	NM_013716	27041.0	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	9.31258645285175	9.6045572392772	9.48402742251001	9.29370740624089	9.48106823081113	9.76817004928724	9.58381041820001	9.48858345954521	0.190606310113262	0.212812559531108	0.517784487262509
Merged-chr10-95514994-4	chr10	95514897	95515097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080560)	promoter-TSS (NM_080560)	-165.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	8.8186690212551	8.66242198028925	8.7023901849261	8.6873528885823	8.41086229597018	8.7264603066538	8.49483053766155	8.55272246158203	-0.213706750712973	0.160438770605056	0.448621443584546
Merged-chr5-115528282-3	chr5	115528159	115528359	+	896.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	21583.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	3.12726020932144	3.02046644607859	2.87187898098327	3.17925155938134	3.03806017399026	3.29582567400777	3.11598446547867	3.12603063983504	0.317784988547006	0.580995679114054	0.81606068836647
Merged-chr7-4078447-4	chr7	4078317	4078517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033568, intron 6 of 8)	intron (NR_033568, intron 6 of 8)	-15213.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	4.31575726860751	4.61435068603478	3.81891262733146	3.75672488106375	4.55328519548951	4.217496857532	4.07341764344199	3.93223454931587	0.115250739880394	0.815958109949341	0.929116658264024
Merged-chr17-78205211-3	chr17	78205116	78205316	+	805.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 1 of 16)	intron (NM_015800, intron 1 of 16)	4968.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	3.21009596545488	3.39665259344034	3.94665954857742	3.72639226842685	3.41376055929158	3.69572793948176	3.61535718415358	3.40512791263453	-0.216019795669797	0.693377442380629	0.875305395019895
Merged-chr10-25395553-3	chr10	25395451	25395651	+	863.8999630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	-12817.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	3.69636353819949	4.14608050946782	4.18202057459463	3.79748350990505	3.51997501335319	3.44447244542758	3.51230745002691	3.46093876058153	-1.51154229774626	0.00310073138126252	0.0327944961347526
Merged-chr10-44752317-3	chr10	44752214	44752414	+	841.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-293566.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	3.31451933756756	3.44643384026076	2.97109576467785	3.53921794561611	3.58277153205495	3.36532369343042	3.36176065268856	3.80955118304047	0.666439103545442	0.253646122981331	0.56492756397914
Merged-chr14-51913463-3	chr14	51913366	51913566	+	912.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145959)	promoter-TSS (NM_001145959)	22.0	NM_001145959	29811.0	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	4.18493740653818	3.71813527563052	4.01057529424826	4.03959933328559	3.82069279504302	3.87143397967253	3.94595906761545	4.09855701435228	-0.174838838773476	0.692578368827862	0.874991759226099
Merged-chr19-36736716-4	chr19	36736627	36736827	+	794.483337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016854)	promoter-TSS (NM_016854)	-123.0	NM_016854	53412.0	Mm.24724	NM_016854	ENSMUSG00000067279	Ppp1r3c	PTG|Ppp1r5	protein phosphatase 1, regulatory (inhibitor) subunit 3C	protein-coding	4.28827228142627	4.15762841406891	4.37888955557749	4.60436787622849	4.17594211643933	4.59320975440526	4.40147902132067	4.61291713809586	0.153795021530113	0.701837438004328	0.879887873504074
Merged-chr14-31215706-2	chr14	31215606	31215806	+	827.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2167.0	NM_001025379	218877.0	Mm.27812	NM_001025379	ENSMUSG00000021904	Sema3g	AK129018	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	protein-coding	3.07037656198925	2.85563057321282	2.88028444076417	2.79131413281566	3.04887058265717	3.18235420537421	3.17062757428513	3.18204443610699	1.04380377251551	0.0684504887765387	0.27938742706722
Merged-chr10-41530158-4	chr10	41530071	41530271	+	971.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016898, exon 6 of 6)	3' UTR (NM_016898, exon 6 of 6)	10671.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	5.57649731351361	5.00163285958518	5.77737882174124	6.1312831148745	5.5186644721304	5.48669144621254	5.97771761931848	5.430604832946	-0.127088245390066	0.716897341236703	0.886811766425459
Merged-chr6-87838907-4	chr6	87838815	87839015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133934)	promoter-TSS (NM_133934)	-156.0	NM_133934	57905.0	Mm.241546	NM_133934	ENSMUSG00000030056	Isy1	5830446M03Rik|AI181014|AU020769	ISY1 splicing factor homolog	protein-coding	8.38068106238329	8.58331006958837	8.26478772521902	8.28624208408185	8.3636175254904	8.71040051559652	8.342979719113	8.42361865344719	0.103519656623105	0.542685872202964	0.793917205662524
Merged-chr6-100850792-4	chr6	100850688	100850888	+	887.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182939, intron 2 of 8)	ORR1C1|LTR|ERVL-MaLR	17150.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	3.64166469786542	4.31462877417252	4.05410752988946	4.02310502268933	4.57751343730791	4.27804928879679	4.22348851809829	4.32461501393178	0.82000842477378	0.059880915037694	0.25815058353323
Merged-chr14-74732252-4	chr14	74732153	74732353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285423)	promoter-TSS (NM_001285423)	-44.0	NM_001285423	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	7.58284873853843	7.3333201833673	7.33049570586606	7.42287626154108	7.38366201428193	7.32930538077902	7.60480987908181	7.28305214690392	-0.0185210531432426	0.919367137418755	0.970286153940659
Merged-chr7-45182388-4	chr7	45182270	45182470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053256)	TTS (NM_053256)	1375.0	NM_053256	114640.0	Mm.207078	NM_053256	ENSMUSG00000038300	Pth2	Tifp39|Tip39	parathyroid hormone 2	protein-coding	6.75913027236163	6.80925426256311	6.2292398934198	6.64544877958643	6.90265397093324	6.56672546618718	6.81968278096431	6.40306136390549	0.090620358469297	0.704699646034217	0.881357466001362
Merged-chr2-173089643-4	chr2	173089546	173089746	+	908.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29879.0	NM_001081387	664799.0	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris	CCCTC-binding factor (zinc finger protein)-like	protein-coding	4.00964145206249	3.66314232412371	3.90814900520931	3.89257761573917	4.4090947892259	4.27576968828316	3.83872232026029	4.27252259816562	0.911986467339293	0.0376083790057609	0.193825704818699
Merged-chr10-96371123-4	chr10	96371024	96371224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144917.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	5.96016923019693	5.52059220967588	5.34513537767987	5.57314835841641	5.60824333105484	5.03720198996339	5.82987246217488	5.51880694478135	-0.138769642749845	0.660535447803637	0.858948291634818
Merged-chr2-164909757-4	chr2	164909644	164909844	+	836.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199027, intron 2 of 27)	intron (NM_199027, intron 2 of 27)	2006.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	3.98970597215447	4.26634856042546	3.77930727202565	3.80395946676529	4.13893123391848	3.8996513153567	4.11006020028403	4.03563736000033	0.225227550114481	0.609117054505192	0.83089280248568
Merged-chr2-24306829-4	chr2	24306723	24306923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15627.0	NM_153077	215274.0	Mm.218750	NM_153077	ENSMUSG00000046845	Il1f10	-	interleukin 1 family, member 10	protein-coding	5.44174010398843	5.598197894886	5.70421230036708	6.37315142789937	5.7671609777661	5.7727081061766	5.9342707838618	6.22897709040521	0.127345090201935	0.693928060908895	0.875656793802988
Merged-chr14-60841474-2	chr14	60841374	60841574	+	801.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027436, intron 14 of 18)	intron (NM_027436, intron 14 of 18)	56908.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	3.22853692662944	3.19032193100598	3.78044981974689	3.31845042857696	3.40210247361141	3.53720453133645	3.46402688690139	3.98407538688392	0.706802044837887	0.203756812149435	0.506768445158274
Merged-chr2-60821863-4	chr2	60821769	60821969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	59569.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	7.68046489097316	7.51359329430107	7.81516003296677	7.89750734590071	7.65985531409141	7.65247343075699	7.64426148988445	7.70112583013837	-0.101178640268686	0.563823635472539	0.806486928766928
Merged-chr1-185224854-4	chr1	185224759	185224959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 2 of 34)	MT2A|LTR|ERVL	-18067.0	NR_034044	100217449.0	Mm.429560	NR_034044	ENSMUSG00000077571	Snora36b	MBI-87	small nucleolar RNA, H/ACA box 36B	snoRNA	6.66315862080662	6.26449999141751	6.18646001436688	6.70161117086936	6.31866050316038	6.01093505531083	6.48039711941456	6.50907465085235	-0.20593651106809	0.414333539498625	0.709044594374843
Merged-chr12-102501230-4	chr12	102501136	102501336	+	860.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	31326.0	NM_013747	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	4.86303189873176	4.79354450979568	4.43482687533706	4.96677992726817	4.12983591912971	4.10937856840949	4.23385566279796	3.85614255273928	-1.66465553499691	5.66906033704033e-05	0.00126020626399186
Merged-chr11-90029570-3	chr11	90029452	90029652	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026433)	promoter-TSS (NM_026433)	-796.0	NM_026433	67888.0	Mm.212428	NM_026433	ENSMUSG00000069763	Tmem100	1810057C19Rik|AV011897	transmembrane protein 100	protein-coding	3.71726308601005	3.5244124087544	3.97029462331357	3.46117611629767	4.8479851440479	4.91418172663226	4.74935311876796	4.70630712197326	2.89223553241939	2.19721971867586e-12	2.21210611535543e-10
Merged-chr3-36318806-4	chr3	36318692	36318892	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-96517.0	NM_198192	229214.0	Mm.330975	NM_198192	ENSMUSG00000058400	Qrfpr	AQ27|Gpr103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding	5.0324442249603	5.00163247564943	4.995148753402	5.23612571381057	5.71481821872335	5.62074626477326	5.30721837431104	5.66729309797898	0.896615454889399	0.0025032607635008	0.0277841256643106
Merged-chr3-115819602-3	chr3	115819502	115819702	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68457.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	3.11406551427711	3.11480939914297	3.28305144042582	3.20226214192195	3.20490300453103	2.95509647859389	3.04303594969974	3.33226517133327	-0.138559363618346	0.806854983461877	0.92554367415935
Merged-chr7-63752224-2	chr7	63752124	63752324	+	826.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_130880, intron 11 of 13)	intron (NM_130880, intron 11 of 13)	-164633.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	2.68912760839997	2.77752162047834	2.81890744195971	2.5485107066658	2.86889321428195	2.8627041401621	2.86804708925697	2.81748204723385	0.72027699024161	0.246505180134171	0.557730549523328
Merged-chr9-4309690-4	chr9	4309600	4309800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026276)	promoter-TSS (NM_026276)	-43.0	NM_001164574	69149.0	Mm.25946	NM_026962	ENSMUSG00000025893	Kbtbd3	2200003A07Rik|Bklhd3	kelch repeat and BTB (POZ) domain containing 3	protein-coding	9.53221194112347	9.68235334022762	9.65156086607857	9.74186510784111	9.76032856334631	9.87265268043368	9.81797743038079	9.62502442146062	0.141068017748603	0.307078731154888	0.619334608547937
Merged-chr12-3344411-4	chr12	3344317	3344517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20715.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	7.71925535478643	8.01223390553302	7.76808267808942	7.67035530151138	7.54897663916937	7.73441819515189	7.88328749212877	7.42601102989954	-0.1829603814376	0.33277321995478	0.643671431918293
Merged-chr4-47011158-4	chr4	47011050	47011250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19436.0	NM_001081141	242425.0	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	7.33400107073415	7.18104170811033	7.48323818719749	7.32122866400967	6.91640254844747	6.80779351985415	7.00171700342998	6.96837526114752	-0.555154146827297	0.0031604697844758	0.0332386345728728
Merged-chr2-165917411-4	chr2	165917309	165917509	+	976.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-32571.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	5.14150050032464	5.09017165871789	4.79377247636779	4.96246818130666	4.99729982640583	5.15310026989402	4.7312165019037	5.07642480424593	-0.00918261677060985	0.977289137217586	0.991888117862217
Merged-chr10-80139030-6	chr10	80138939	80139139	+	954.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036582, intron 1 of 10)	CpG	328.0	NR_036582	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	4.51581362420844	3.98350032075131	4.00106130979174	4.25807078878246	3.91516544901413	4.32388739812215	3.98469567628094	4.44101796558002	-0.0736563550913212	0.868080359776308	0.950586789872738
Merged-chr10-41473917-4	chr10	41473813	41474013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2401.0	NM_001164433	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	6.56699914259114	6.69154298066527	6.18935863686108	6.35357850871406	6.46003269217035	6.36701076277155	6.47099842083628	6.57893931738919	0.0151929652434899	0.946577884214237	0.980948783875449
Merged-chr7-19304385-2	chr7	19304285	19304485	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008036, exon 4 of 4)	3' UTR (NM_008036, exon 4 of 4)	5660.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	4.80462544930268	4.66012460807469	3.78059111002244	3.68961632990856	4.44454808466225	4.77709566360851	4.11482361660398	4.22985608537789	0.187554759327896	0.722533208253707	0.889239126977372
Merged-chr4-41129599-4	chr4	41129498	41129698	+	723.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5259.0	NM_139236	230082.0	Mm.285797	NM_139236	ENSMUSG00000028430	Nol6	AA410091|Nrap	nucleolar protein family 6 (RNA-associated)	protein-coding	3.50854082678584	3.43803126042297	3.38780438302971	3.51735669251985	3.87036306427319	3.84123411452087	3.75383304765957	3.56372637056637	0.926339390426074	0.0520709771296914	0.237572623216372
Merged-chr8-123373743-4	chr8	123373653	123373853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037877)	promoter-TSS (NM_001037877)	42.0	NM_001286363	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	8.02707826800388	7.9315925868824	7.3039995451701	7.60350050335473	7.86764588129789	7.89132204002507	7.74715748745298	7.43746823817662	0.00561008194844745	0.979406381267012	0.99269129061727
Merged-chr7-98815330-4	chr7	98815210	98815410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-19802.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	6.30653339017609	6.1848576634674	6.0470931327829	6.30616950334904	6.33747967313997	6.1325195706643	6.22015314039385	6.39047787302894	0.0836249268776712	0.712602483784857	0.88495186291337
Merged-chr2-32494633-4	chr2	32494540	32494740	+	926.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-40719.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	4.85498870345324	4.72933128308252	4.50939910283896	4.9032680335562	4.56228676626089	4.64002369985919	4.57382651776813	4.8185377835615	-0.257882102229122	0.46267703211909	0.744191285656537
Merged-chr9-62894673-4	chr9	62894586	62894786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 9 of 13)	intron (NM_019663, intron 9 of 13)	-32662.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	5.57173407580959	5.41460746178605	5.68016532552529	5.92801863591975	5.75741310132626	5.92944343253832	5.62561987290329	5.93150926699203	0.217835161757498	0.431775880079464	0.721875955368174
Merged-chr8-72136894-4	chr8	72136816	72137016	+	897.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001491, intron 1 of 7)	(TG)n|Simple_repeat|Simple_repeat	1624.0	NM_001001491	326618.0	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	4.13922873932811	4.75969484277825	4.04057263979413	3.54659328253507	4.14161846077755	4.26782080043214	4.12151306756932	4.27315883849503	0.00802581767163401	0.987213265507717	0.995258250959001
Merged-chr9-94703638-4	chr9	94703544	94703744	+	819.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	33752.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	3.55404615512581	3.53934971882785	3.99919824679196	3.96693937294612	3.84714781086673	3.5438095889692	3.80518860862773	3.76982901034956	-0.123215841205753	0.802720277588089	0.923936032101707
Merged-chr8-122913392-3	chr8	122913298	122913498	+	959.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 3 of 12)	intron (NM_001081379, intron 3 of 12)	65024.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	4.07614737564136	4.04057858718129	3.51824659171845	3.89107167866863	3.50336087661201	3.87012903589878	3.62549658833122	3.85002802436627	-0.543589481515672	0.267351405732843	0.579029536243968
Merged-chr17-73395004-3	chr17	73394905	73395105	+	868.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033444, intron 1 of 22)	intron (NM_001033444, intron 1 of 22)	4291.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	4.2505996076601	3.87422339035807	4.21189330235257	4.25958161440609	3.43439691243066	3.59544025177962	4.06703834373318	3.78603568801491	-1.1995808810427	0.0145542791221006	0.102653748588309
Merged-chr5-32930964-4	chr5	32930851	32931051	+	962.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025426, intron 25 of 42)	intron (NM_001025426, intron 25 of 42)	67230.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	4.91830946490369	4.54164874690222	4.18913646382283	4.52092663587752	4.51974408340458	5.02472034326721	4.37101948052531	4.52065150133947	0.138935501186533	0.731642044540124	0.893712980527561
Merged-chr6-124997521-3	chr6	124997439	124997639	+	682.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145927)	promoter-TSS (NM_001145927)	819.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	3.22119751597976	3.05314585660914	3.60887787424101	3.16045171563278	2.9239712911434	2.93830204887508	2.96377348504384	3.27515344026561	-0.958935045069902	0.118046012712181	0.380130163718798
Merged-chr5-105292423-3	chr5	105292322	105292522	+	750.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194336, intron 1 of 10)	intron (NM_194336, intron 1 of 10)	1277.0	NM_194336	100702.0	Mm.491210	NM_194336	ENSMUSG00000104713	Gbp6	AI595338|Mpa2l	guanylate binding protein 6	protein-coding	3.40651330972893	3.38779972833485	3.61959946872903	3.42068563921299	3.89486424611679	3.33286189887711	3.33600595306532	3.34617496349235	0.188008755787078	0.728923966171997	0.892306934065225
Merged-chr11-70038278-4	chr11	70038168	70038368	+	905.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007864, intron 8 of 19)	intron (NM_007864, intron 8 of 19)	-15856.0	NM_001291131	11889.0	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	4.34399448520074	3.92076965099395	3.75074812290727	4.02487754754386	4.40146150955158	4.20622001751345	4.28448985061868	4.21711794777069	0.650636326751821	0.122388164232412	0.387658737179549
Merged-chr7-55784729-4	chr7	55784635	55784835	+	979.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-9390.0	NM_001360874	233276.0	Mm.284306	NM_146190	ENSMUSG00000033790	Tubgcp5	B130010C12Rik|GCP5|mKIAA1899	tubulin, gamma complex associated protein 5	protein-coding	5.47952943688902	5.22263020614391	5.42700547735423	5.98907896666016	4.7254892659433	4.90181356439876	5.12835151329246	5.33850547836729	-0.98619310615543	0.00475610766126632	0.0458218607312377
Merged-chr19-12012432-4	chr19	12012353	12012553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24287.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	6.54063078271205	6.67532717388074	6.33392662521481	6.35495139653438	6.65533617046766	6.41346225665296	6.37434352797032	6.45469569469565	0.0131670514861798	0.952913121450407	0.983276598943455
Merged-chr9-31082421-3	chr9	31082332	31082532	+	889.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49367.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	3.16255066605209	3.24885583169543	3.35919210834734	3.41897296187869	3.76575024510298	3.53394927205828	3.71104705686826	3.67901742419577	1.20154746993477	0.0186116015312621	0.12205225588665
Merged-chr13-54818968-4	chr13	54818847	54819047	+	905.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29542.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	4.34696954715456	4.51947112228051	4.43478447482698	4.27221009977932	4.26193416332588	4.79839110501586	4.45553406456615	4.29912792529905	0.167859417895777	0.665503654004757	0.861482624541591
Merged-chr5-140502468-4	chr5	140502353	140502553	+	935.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3156.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	4.88395036783491	4.47171340701192	4.85214066155241	4.66617929453502	4.48384421762413	4.45693940682067	4.761101967231	4.46582667120199	-0.380109542955334	0.295558337435347	0.60749485706932
Merged-chr2-52965223-3	chr2	52965124	52965324	+	879.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	107356.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	4.04884702727138	4.03667321153274	4.04946282278997	3.99957169410354	3.92144941224293	3.61245930216888	3.98631566502092	3.95364177535008	-0.417578847573213	0.339738804133731	0.648878079497473
Merged-chr2-148731839-3	chr2	148731727	148731927	+	802.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019632, intron 1 of 10)	intron (NM_019632, intron 1 of 10)	593.0	NM_019632	17957.0	Mm.274308	NM_019632	ENSMUSG00000027438	Napb	Brp14|E161|I47|SNARE|b-SNAP	N-ethylmaleimide sensitive fusion protein attachment protein beta	protein-coding	3.63125342585301	3.30415670483809	3.33025514735706	3.47831225336497	2.70531889620785	3.26138127793495	3.20010021671218	3.38378268736132	-1.05066456891597	0.104981702506775	0.356374561821901
Merged-chr19-10173655-4	chr19	10173569	10173769	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9219.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	5.00361253803412	5.06594728471864	5.06732646407884	4.63127011553041	4.73352026981291	5.0414611997231	4.65357233633289	4.586026955046	-0.363780609505463	0.306318123454135	0.618782430166361
Merged-chr16-17559147-3	chr16	17558991	17559191	+	815.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145435, intron 3 of 7)	intron (NM_001145435, intron 3 of 7)	2156.0	NM_029053	74685.0	Mm.38634	NM_029053	ENSMUSG00000022759	Lrrc74b	4930451C15Rik|mCG12354|mCP17390	leucine rich repeat containing 74B	protein-coding	3.35587447552575	2.97949371976281	3.30582055414289	3.28144303282147	2.82552155551972	2.91656757378304	3.29169612349492	2.95026932470131	-0.944240851224638	0.125903438632726	0.394127929388635
Merged-chr5-29569086-4	chr5	29568981	29569181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133907)	promoter-TSS (NM_133907)	-161.0	NM_133907	100763.0	Mm.137746	NM_133907	ENSMUSG00000039000	Ube3c	AI853514|mKIAA0010	ubiquitin protein ligase E3C	protein-coding	8.75389061412142	8.69319863207734	8.66112836673187	8.54768496087844	8.69646912574586	8.92456772788205	8.80674237269496	8.56357483146755	0.113483675422034	0.465984505413588	0.74626088086293
Merged-chr11-97985488-4	chr11	97985374	97985574	+	951.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163608, intron 1 of 13)	intron (NM_001163608, intron 1 of 13)	972.0	NM_028199	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	4.63554510315869	4.20446181279625	4.47295198219743	4.39966198506553	4.57362017237951	4.91634246155865	4.8236378048188	4.47011760164091	0.59839394436168	0.106499174496738	0.359811312962945
Merged-chr5-148542399-4	chr5	148542309	148542509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	9264.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	6.37673479763044	6.32674062484879	6.67046271803863	6.56174795139836	6.22451554739919	6.44056658791213	6.87229301171491	6.49523323457491	0.0439835723704747	0.855556408441325	0.945674414504706
Merged-chr4-124802080-4	chr4	124801984	124802184	+	972.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008636)	promoter-TSS (NM_008636)	-465.0	NM_008636	17764.0	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	5.36333195678801	5.20701866364189	4.692915574719	5.11199427757113	5.05173406736249	5.03459019209215	4.87337869625142	5.00158578005763	-0.236972423996733	0.471406457434949	0.749832180244525
Merged-chr13-104817075-4	chr13	104816967	104817167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026072)	promoter-TSS (NM_026072)	-103.0	NM_026075	67288.0	Mm.125465	NM_026075	ENSMUSG00000021716	Srek1ip1	3110031B13Rik|AI462702|AV348305|AW121048|Sfrs12ip1|Srsf12ip1	splicing regulatory glutamine/lysine-rich protein 1interacting protein 1	protein-coding	6.32469037508577	6.33697365561184	7.06478700141952	6.43467271991938	6.25014551632923	6.34495068167056	6.0484055316641	6.37600257921597	-0.463158309845659	0.0785234288330544	0.303249263627235
Merged-chr2-121414436-4	chr2	121414341	121414541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153075)	promoter-TSS (NM_153075)	539.0	NM_007952	14827.0	Mm.263177	NM_007952	ENSMUSG00000027248	Pdia3	58kDa|ERp57|ERp60|ERp61|Erp|Grp58|PDI|PDI-Q2|PI-PLC|PLC[a]|Plca	protein disulfide isomerase associated 3	protein-coding	5.14132184199922	5.33534080899817	5.39023501045399	5.21464775586983	5.52566925203844	5.31752985472077	5.21509369485016	5.41431185812057	0.202003188138706	0.481598283146211	0.756719381598145
Merged-chr7-68718259-2	chr7	68718159	68718359	+	842.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30979.0	NM_001042592	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	2.65830931680947	2.45447117736257	2.51146820531731	2.48731834377122	2.96586652107414	3.02378873985375	2.89996665640782	2.96661265104215	2.1391648622707	0.000934263257412275	0.0127345699730655
Merged-chr6-88821086-4	chr6	88820984	88821184	+	892.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166249, intron 6 of 7)	intron (NM_001166249, intron 6 of 7)	20851.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	4.45920849857685	4.7126575265284	4.58017579001882	4.59186116030932	4.25992604614635	4.67296416202159	4.43955315143005	4.01137818613343	-0.525152345424254	0.181865113165528	0.478521990611014
Merged-chr5-24602719-3	chr5	24602640	24602840	+	943.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025891)	promoter-TSS (NM_025891)	-738.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	4.19286280510791	3.98046538347774	4.10308343065285	4.46649509097894	3.87494221350326	3.71422254107112	4.25815422816694	4.23372149380027	-0.443419136687761	0.33245570979869	0.64346986397225
Merged-chr17-35821167-4	chr17	35821044	35821244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133662)	promoter-TSS (NM_133662)	-569.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	5.31602148417782	5.65697470217279	5.34758024919621	5.35325097967421	5.48143966955648	5.74154853489022	5.32104963684169	5.112449791148	0.0152828190756337	0.95948414746827	0.985513818852278
Merged-chr6-119472869-4	chr6	119472750	119472950	+	858.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	ERVL-int|LTR|ERVL	-5639.0	NM_001271758	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	4.31872096517183	3.48462278157169	4.12186117062905	4.07393995815975	3.576054213889	3.95755604523763	3.92103368479648	3.93559121855715	-0.497369199196554	0.320553998303057	0.632409796424881
Merged-chr5-41519141-3	chr5	41519036	41519236	+	900.8110960000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	188555.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	3.31662351537574	3.13642013183546	3.47022519409512	2.81649223303185	4.86848208785559	4.78272554521505	4.30348206463575	4.32296491439367	4.56795469247235	1.03289341409159e-16	2.1946364275112e-14
Merged-chr7-118699035-4	chr7	118698912	118699112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019580, intron 1 of 5)	intron (NM_019580, intron 1 of 5)	6726.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	5.86798358334494	5.89458656069009	6.72414333626221	6.68350346585265	6.20625976559496	5.91417420553979	6.49082472169919	6.48830574850691	-0.104424532249274	0.734559473911845	0.895080097126908
Merged-chr16-87495918-4	chr16	87495843	87496043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009840)	promoter-TSS (NM_009840)	-74.0	NM_009840	12469.0	Mm.328673	NM_009840	ENSMUSG00000025613	Cct8	AI132397|Cctq|Tcpq	chaperonin containing Tcp1, subunit 8 (theta)	protein-coding	7.80971586098899	8.05857536177375	7.93047243058531	7.50877352701467	8.03657380926239	8.29913405310444	7.95464321903978	8.12223701144585	0.3524207793283	0.0648018823814673	0.270704453666909
Merged-chr17-25117427-3	chr17	25117330	25117530	+	832.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1463.0	NM_001163661	71718.0	Mm.288702	NM_027880	ENSMUSG00000024170	Telo2	1200003M09Rik|AI415602|Tel2|mKIAA0683	telomere maintenance 2	protein-coding	4.19700947641135	4.74933604085914	3.91838367660275	3.85715974363883	3.87854075225698	3.98977821395292	3.61689501578163	3.56254244549564	-1.23467654177406	0.0179564336707145	0.118982250251335
Merged-chr14-120278454-4	chr14	120278346	120278546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	2777.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	6.79791856004872	6.56975806087388	6.74214378170184	6.99554412725085	6.81505238979143	6.66201070316894	6.63332440174688	6.91347014052984	-0.0478418413175462	0.823051906817021	0.932185203682946
Merged-chr6-129727457-3	chr6	129727361	129727561	+	911.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-10329.0	NM_001012520	503550.0	Mm.376476	NM_001012520	ENSMUSG00000067610	Klri1	-	killer cell lectin-like receptor family I member 1	protein-coding	4.56898696712254	4.66785812142325	4.80858407287268	4.31509239761753	3.99169945476625	4.58333207591598	4.15926687871437	3.95436075643997	-0.965637720877869	0.024474634659987	0.146270362759296
Merged-chr17-80479845-4	chr17	80479734	80479934	+	986.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009231, intron 1 of 21)	CpG	619.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	4.01199960358554	4.59546488942178	5.17406104087835	4.88301635330756	4.68879857568774	4.53209462987586	4.71586555050088	4.80755464546526	-0.0952589138831742	0.824605829168162	0.932696938095671
Merged-chr3-136347518-4	chr3	136347411	136347611	+	808.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-21445.0	NM_001033350	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	4.22655953179117	4.41125413127235	4.17634205134412	4.62871382595776	4.83740676133668	4.49769955391076	4.435114999701	4.45251465885305	0.41351021941385	0.299550080406605	0.611816257004375
Merged-chr11-6519806-4	chr11	6519697	6519897	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178440, intron 1 of 21)	intron (NM_178440, intron 1 of 21)	1161.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	5.44711448116771	5.12371827180969	5.17247457818789	5.1030254108827	4.87587190271832	4.82439121042904	5.39651789579618	4.96735821500366	-0.339736639486257	0.303142885762335	0.615670331523426
Merged-chr17-67339793-4	chr17	67339670	67339870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	14689.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	4.93659970129611	5.07702341007486	5.01029090703639	5.32448355694307	5.35531986693305	5.07584303664212	5.15071692188223	5.04184056582826	0.105189711089195	0.73977934942142	0.897537913555384
Merged-chr3-84229126-4	chr3	84229011	84229211	+	925.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271726, intron 1 of 11)	intron (NM_001271726, intron 1 of 11)	-8234.0	NM_030706	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	4.56615098912664	5.00979318344834	4.83154536340396	4.47667964499401	4.3528102168796	4.41728447147657	4.66491251792063	4.89461146845515	-0.291981150657672	0.451183641802322	0.735800313712694
Merged-chr3-28814588-2	chr3	28814488	28814688	+	855.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9080.0	NM_026517	68028.0	Mm.21724	NM_026517	ENSMUSG00000039221	Rpl22l1	3110001N18Rik|AU041196	ribosomal protein L22 like 1	protein-coding	3.58763592234445	4.090332979127	3.53125416842704	3.45758086747696	3.67671219402075	3.70585900977193	3.67951693590176	3.40802948708097	-0.202301813702315	0.696494753282708	0.877228600292293
Merged-chr15-98937032-4	chr15	98936979	98937179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2689.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	6.48051026242807	6.09713485721457	6.03548955178153	6.13406963741461	6.22751078171546	6.45323376251372	6.13120962824331	6.1173502819835	0.0671884432429847	0.779952711853271	0.914269195299957
Merged-chr2-35162814-4	chr2	35162714	35162914	+	876.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_012018, exon 31 of 44)	exon (NM_012018, exon 31 of 44)	30580.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	4.28733049528407	5.1058064989686	4.59082293228766	4.39592380738561	4.33914032984	4.41787440346896	4.06134415642153	4.6625150822683	-0.557278123154242	0.198234202795093	0.499738350301112
Merged-chr16-91851835-7	chr16	91851715	91851915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 21 of 28)	intron (NM_001110275, intron 21 of 28)	79815.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	5.70350612394546	5.38878337913752	5.86487517703571	5.64634965791144	5.2330041545909	5.51764335329933	5.40589921084817	6.11245587366741	-0.0871906870812795	0.785025109776614	0.916374873074418
Merged-chr5-124616664-4	chr5	124616566	124616766	+	795.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026486, intron 11 of 18)	intron (NM_026486, intron 11 of 18)	-12386.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	3.93762681636273	3.73694240968194	3.72346728083782	3.67666839855391	3.87842427982068	4.06210832813911	3.92125526730845	4.45563746103567	0.906628103504854	0.0449506582643795	0.21667685533352
Merged-chr11-63136393-1	chr11	63136293	63136493	+	791.0	f0_balb.idr	intron (NM_001302255, intron 3 of 4)	intron (NM_001302255, intron 3 of 4)	3590.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	3.80470348645328	3.99798419354229	3.6072346932217	3.71587826183361	3.33893950607442	3.67004777136027	3.22976377320454	3.37181112413404	-1.26009397365445	0.0165215176460431	0.112351686684599
Merged-chr11-67563362-4	chr11	67563251	67563451	+	991.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	-23149.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	4.98161505259788	6.14730374114081	5.22749425512107	5.07221809743511	6.23774441103963	6.3973161527148	6.13841433361309	5.95077846189816	1.18613692428442	0.000848635799934282	0.0117978608600629
Merged-chr6-122804643-4	chr6	122804547	122804747	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15537.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	5.41842527600277	5.25964435027343	4.91431456867964	4.98860113431819	5.1165795405353	5.23541404775617	5.16626477056037	5.12441111941118	0.0156913879262845	0.959864677697359	0.985662310124408
Merged-chr15-12012649-3	chr15	12012553	12012753	+	798.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-16646.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	3.84290091662309	3.8927777243448	3.68769697312505	4.20394260023658	3.46283658504801	3.68967796359541	3.55965203298624	3.93524151801844	-0.788766947605084	0.112973983740445	0.371460420762248
Merged-chr2-153291382-4	chr2	153291283	153291483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008444)	promoter-TSS (NM_008444)	-33.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	6.60917449404298	6.40552101932725	6.03483740135681	6.03377249483693	6.76414265717043	6.87145005592983	6.15773666928575	6.34134426946801	0.417992804507283	0.12573023016841	0.393811271471296
Merged-chr9-105130990-1	chr9	105130890	105131090	+	589.0	f1_c57bl6.idr	intron (NM_029385, intron 2 of 2)	intron (NM_029385, intron 2 of 2)	815.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	2.70860767312981	2.61046827095741	2.64810762006952	2.40584151605686	2.461889732393	2.47527230916999	2.43967197262633	2.82089699487381	-0.17835493584638	0.799960735225147	0.922799254061175
Merged-chr16-30188204-4	chr16	30188095	30188295	+	975.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79337.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	5.1179337890001	5.18936902625367	5.44381672318035	5.71120066704166	4.96733051093448	4.82019133433979	5.22085077422163	5.14851496483599	-0.663066735116847	0.0441892208687981	0.214435816213538
Merged-chr7-75667218-3	chr7	75667113	75667313	+	651.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 10 of 36)	intron (NM_029332, intron 10 of 36)	-181125.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	3.60188242111878	3.59277635584435	3.74715322340102	3.40075902348015	3.42064833985143	3.43123414268047	3.30646127407093	3.60030348310665	-0.464628321000905	0.362557159806762	0.667713422802286
Merged-chr14-73451827-3	chr14	73451722	73451922	+	661.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58227.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	3.65541879747023	3.83310185071174	3.49129590070445	3.25225215555724	3.76662587974674	3.72177782167368	3.73853213261035	3.2330734256079	0.202288460775298	0.708968564791659	0.883216904245951
Merged-chr14-32086447-2	chr14	32086347	32086547	+	729.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104303)	promoter-TSS (NR_104303)	719.0	NM_145460	218885.0	Mm.202257	NM_145460	ENSMUSG00000021906	Oxnad1	2410002F01Rik|AW492292|BC019806	oxidoreductase NAD-binding domain containing 1	protein-coding	3.27645093108593	3.1115904060804	3.63200968676649	3.29853212179739	3.10514544186704	3.26614330092364	3.26458621779612	3.3869719048203	-0.305864892891147	0.581882501338742	0.816420227529328
Merged-chr15-97059830-4	chr15	97059729	97059929	+	935.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3873.0	NM_027052	69354.0	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	4.33614982568841	4.52511691063009	4.53721739714212	4.55588279777287	4.37031613986687	4.27622678279493	3.85862975659474	4.19696593712433	-0.717257117909291	0.0773268197084041	0.300748815442531
Merged-chr3-40950791-4	chr3	40950692	40950892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040399, intron 1 of 9)	CpG-9127	161.0	NM_001040399	214048.0	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	5.01452025100847	4.81793411384361	4.55708211080379	5.11677660668351	4.85518514706303	4.59455033925089	4.95860760319718	5.04356136720277	-0.0675884590232342	0.848076298170542	0.942612651933043
Merged-chr8-106507901-1	chr8	106507801	106508001	+	598.5	f0_balb.idr	Intergenic	CpG	-2951.0	NM_007665	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	3.15022258943288	2.88224787041988	3.20296682504415	2.93482017027447	3.07981441801611	2.73703583250131	3.02763031964853	2.84994508352502	-0.454925902170506	0.466373745328752	0.746420287776482
Merged-chr11-75152737-7	chr11	75152616	75152816	+	823.904785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 15 of 18)	intron (NM_001002764, intron 15 of 18)	15436.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	3.72716091592144	3.68766423392409	3.93052328204888	3.79521376331024	3.85474416047046	3.90098477996382	3.86630636967051	3.97412912678516	0.317141388824564	0.468382543730903	0.747695644222162
Merged-chr11-115248181-3	chr11	115248053	115248253	+	634.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19090.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	3.19843369021318	3.02778754094588	2.9297575160029	3.00046507632724	2.7698879749881	2.97423826122744	2.72746907260774	2.7337025729545	-1.10862920613225	0.0793503977981098	0.304966940006417
Merged-chr1-186182750-3	chr1	186182645	186182845	+	958.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65435.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	3.97404636667778	3.64592513091864	3.85517066830962	3.80236607733046	3.10059480857992	3.10699957892199	3.0629383931535	3.21376447812267	-2.72941176726199	8.36326348410401e-06	0.00023473530423306
Merged-chr14-19418182-4	chr14	19418088	19418288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	184399.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	7.73872749986332	7.23493040435762	8.52557495129278	8.43981776837642	7.32278167635793	8.03665478629322	7.62565065242617	8.59294357311782	-0.128228200775444	0.801251735777622	0.923340719847852
Merged-chr2-29200052-4	chr2	29199970	29200170	+	927.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305805, intron 4 of 7)	intron (NM_001305805, intron 4 of 7)	48029.0	NM_001305805	171171.0	Mm.442448	NM_133500	ENSMUSG00000035513	Ntng2	2610016D08Rik|Lmnt2	netrin G2	protein-coding	4.4900285307373	4.32866931274997	4.13742371498904	3.99236811493381	4.1780554019066	4.66058367103826	4.5435812698138	4.18469493813746	0.392696548887238	0.346133066320667	0.65437996089346
Merged-chr15-81859610-3	chr15	81859487	81859687	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-1261.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	5.71354952880588	5.78749610914426	6.21928320403766	5.09811567309841	6.60386683170555	6.14729540652657	6.57311801494899	6.61629371990137	1.16011733018474	0.000162954108495416	0.00306282294391213
Merged-chr12-84409010-4	chr12	84408919	84409119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007647)	promoter-TSS (NM_007647)	10.0	NM_007647	12499.0	Mm.10211	NM_007647	ENSMUSG00000021236	Entpd5	AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase	ectonucleoside triphosphate diphosphohydrolase 5	protein-coding	6.42974522576422	6.39190228083817	5.73168507432482	6.36260893810619	6.46243956111387	6.76903290680462	6.87937012427997	6.51017082472588	0.580377654955955	0.0231333808914282	0.140892523185674
Merged-chr5-105627295-4	chr5	105627207	105627407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72662.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	5.41097729725427	5.26745943940874	5.18610177717848	5.50740728186927	5.49905248092897	5.69918551654714	5.96253361329598	5.40813560193795	0.506591804243746	0.0848575986220735	0.317004230056502
Merged-chr12-8384087-2	chr12	8383986	8384186	+	997.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70653.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	3.58917692281796	3.40791186754079	3.47810057537456	3.60936964385514	3.60128638905303	3.26281573682081	3.52126925014272	4.06954537043475	0.381447720955432	0.474178285178393	0.751607118426792
Merged-chr17-10350701-2	chr17	10350601	10350801	+	646.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26099.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	3.1784811100261	3.22463811195163	3.23812108240298	3.1197108423275	3.40372713270123	3.09162423279288	3.43604601627535	3.23643988276229	0.439248845092467	0.41456651764949	0.709115664810829
Merged-chr14-16366502-1	chr14	16366402	16366602	+	569.0	f0_balb.idr	intron (NM_009409, intron 1 of 35)	intron (NM_009409, intron 1 of 35)	1296.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	3.38384668124127	3.31774968937852	3.82361589934018	3.31180836598226	3.61758711490879	3.23974730514175	3.31285224574537	3.49391125792586	-0.130816036631258	0.811304564600889	0.926950255422823
Merged-chr14-32931904-4	chr14	32931818	32932018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178791, intron 7 of 7)	intron (NM_178791, intron 7 of 7)	-59464.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	6.596793793399	7.01630909253887	6.82121433234573	6.64941474237455	6.72096681891178	6.8380558925484	6.6877251269809	6.65672966362711	-0.0726801214655824	0.729882018119468	0.892804127302382
Merged-chr4-130916860-4	chr4	130916777	130916977	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	3543.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	5.38514944275328	5.02901992006675	5.03754948808106	5.57539191415201	5.12630912336304	5.21448525319132	5.15025687067388	5.48833831237423	-0.0860865447802176	0.790268288357991	0.918828686312538
Merged-chr5-143499886-3	chr5	143499788	143499988	+	846.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 11 of 14)	intron (NM_144915, intron 11 of 14)	28105.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	3.96058154262454	4.10551540457371	3.48646846874033	3.76797847856195	3.44012637595201	3.78360501442571	3.65022946167439	3.81917818593084	-0.519632239274214	0.298978645869569	0.61127710215287
Merged-chr1-95591267-4	chr1	95591168	95591368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009183, exon 5 of 5)	3' UTR (NM_009183, exon 5 of 5)	76326.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	5.23080194710974	5.02184685047335	5.37838064902967	5.54976070409633	5.35391133801183	4.78990880241756	5.29522611089055	5.25878756119959	-0.220270998387682	0.500543215925095	0.768850577358824
Merged-chr10-83198111-4	chr10	83198009	83198209	+	891.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	139708.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	3.61310463373416	4.0632425776925	3.73386569315596	3.99188259473456	3.85986736042017	4.20970143419434	4.22919215537554	3.78814521084685	0.432290985223995	0.356816303130359	0.66317411451208
Merged-chr1-64597763-4	chr1	64597716	64597916	+	775.982117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009952, exon 9 of 9)	3' UTR (NM_009952, exon 9 of 9)	19352.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	3.15396450731015	3.04883797723947	3.09045332706767	2.78791861108955	3.46529173754516	3.49968877775528	3.2605532752146	3.38089268780543	1.52327515859948	0.00631401139647338	0.0563064897518362
Merged-chr13-58128113-4	chr13	58127959	58128159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029872, exon 1 of 1)	exon (NM_029872, exon 1 of 1)	497.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	4.91377359942155	5.21555670837445	5.34102316954686	4.70785619328711	5.11759283720864	5.30374010869003	5.22832277503267	5.41807547966526	0.404706918912562	0.218959178204659	0.526352426390726
Merged-chr2-101177982-4	chr2	101177879	101178079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-446769.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	6.84258428909423	6.57488174525551	7.06444562262494	7.41824531184096	7.09886109142698	6.96333399505128	6.89108234076052	7.21580051991747	0.0296177922646859	0.902962758930591	0.964017132155217
Merged-chr17-25834189-2	chr17	25834089	25834289	+	960.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019719)	promoter-TSS (NM_019719)	-828.0	NM_019719	56424.0	Mm.277599	NM_019719	ENSMUSG00000039615	Stub1	0610033N24Rik|2210017D18Rik|2310040B03Rik|AW046544|Chip	STIP1 homology and U-Box containing protein 1	protein-coding	2.34641000592744	2.21048593197482	2.3466795645496	1.90718546610154	2.33901588071701	2.65909567852392	2.47445591196968	2.66553977679251	1.99072041190492	0.0196580747470637	0.126502314657015
Merged-chr2-31069718-4	chr2	31069643	31069843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	MTB_Mm|LTR|ERVL-MaLR	26757.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	5.94136921851829	5.5984910499941	6.08586433931738	5.88568721127496	5.63222991240925	5.77236239902339	5.93346116241573	5.95968516001368	-0.0987835642351101	0.706901317994629	0.882299855212431
Merged-chr7-84605932-4	chr7	84605853	84606053	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010176)	promoter-TSS (NM_010176)	-11.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	5.24515231671907	5.05714539269242	5.71627322017513	5.70847822835573	4.69006216602053	4.68377287224147	5.09453307050458	4.90042888802883	-1.17769092080872	0.000722673675184282	0.0103875584664665
Merged-chr17-46523261-4	chr17	46523149	46523349	+	888.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081335, intron 17 of 40)	intron (NM_001081335, intron 17 of 40)	23139.0	NM_001081335	78309.0	Mm.329076	NM_001081335	ENSMUSG00000040327	Cul9	1810035I07Rik|Cul-9|Parc|mKIAA0708	cullin 9	protein-coding	4.05337605335134	4.20144122250001	4.39590874992191	4.02635359543269	3.68102141129523	3.96433071168119	4.29837715609245	4.19055217588126	-0.320223596113376	0.476894982508883	0.753208576524599
Merged-chr11-44470574-4	chr11	44470458	44470658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024475)	promoter-TSS (NM_024475)	-10.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	7.63562641277305	7.87860958920485	7.75216442823783	7.60292921958306	7.71591836423177	7.85643629405499	7.7606530703746	7.55183836662062	0.00842601488600828	0.961487461966317	0.986233713131014
Merged-chr2-6256436-4	chr2	6256330	6256530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-43436.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	6.22433071322684	5.85782775263077	5.78886330879518	6.3479827830504	6.05198196640327	5.85946766546278	6.2117337065697	6.18355830835769	-0.0123274003570283	0.962859904011583	0.986716902231301
Merged-chr11-5369328-3	chr11	5369235	5369435	+	939.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080924, intron 1 of 8)	intron (NM_001080924, intron 1 of 8)	12405.0	NM_001290501	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	4.19494399593277	3.69695747298884	3.94110311636337	4.0604775931008	3.75774925685942	3.54539502006557	3.7230446440454	3.93871163582344	-0.680963357380058	0.149371359302142	0.431576920047058
Merged-chr14-70076853-4	chr14	70076770	70076970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289925)	promoter-TSS (NM_001289925)	-575.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	7.30107990682027	7.84903548372937	7.14028564290421	7.06599732148052	7.66351642497389	7.75186487494167	7.81010819778844	7.45992093351144	0.400292871529203	0.0789930347485113	0.304143905332072
Merged-chr7-15922480-4	chr7	15922372	15922572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009156)	promoter-TSS (NM_009156)	-101.0	NM_009156	20364.0	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	6.91633304986163	7.00575597357174	7.46377765848618	6.96590718612432	6.82749316680786	7.05392124924399	6.69534972189828	7.27192646839965	-0.171905186674377	0.457149155728088	0.740364738964964
Merged-chr5-90413462-1	chr5	90413362	90413562	+	595.0	f0_balb.idr	Intergenic	Lx6|LINE|L1	46465.0	NR_045618	791294.0	Mm.30508	NR_045618	ENSMUSG00000054945	Gm9958	-	predicted gene 9958	ncRNA	3.21943239433253	3.29654735680012	3.2198463205902	3.02889076658007	3.46162445295953	3.14224374171475	3.14940147625583	3.21817226878289	0.268180507902309	0.628584673097425	0.841592736581755
Merged-chr14-55689739-4	chr14	55689662	55689862	+	845.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-7945.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	3.66111356470396	4.47794861247341	4.00864069275375	3.95151667672413	4.08808787545695	4.41139088711101	3.99182534933005	4.28050007746349	0.355632109863629	0.444230319906954	0.73065602044221
Merged-chr11-95258683-4	chr11	95258598	95258798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2831.0	NM_053093	93670.0	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	5.71942400431365	5.45104300950123	5.37863156588433	5.43809729328092	5.5212176823497	5.36169456249022	5.69127131168625	5.31314609704708	-0.0233194022207614	0.934071395756457	0.976260486007208
Merged-chr15-5539569-4	chr15	5539517	5539717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045274, intron 1 of 4)	intron (NR_045274, intron 1 of 4)	43299.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	6.46826821287146	6.64864427051323	6.5166767705414	6.00630484983743	6.19090584770239	6.2098312794576	5.90761390348492	6.15713626465234	-0.445929470388564	0.084763800120711	0.316813827388789
Merged-chr12-55415910-3	chr12	55415805	55416005	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310583, intron 6 of 6)	intron (NM_001310583, intron 6 of 6)	17080.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	4.55227236842308	4.74994311741407	4.76986350219638	4.80369624032662	4.2193189797681	4.1513027321179	4.45113817241353	4.18870251870034	-1.09148345053925	0.00381055949288003	0.0385820503760608
Merged-chr18-20888185-3	chr18	20888092	20888292	+	803.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177038, intron 1 of 28)	MTEa-int|LTR|ERVL-MaLR	7886.0	NM_029491	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	3.62588792596753	3.34405400157666	3.33079180353653	3.95572400829376	3.57958781185934	3.63170644553577	3.71223463338564	3.77371029136868	0.202446874541478	0.705553654576643	0.881759346486013
Merged-chr4-86676233-3	chr4	86676189	86676389	+	750.766663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR34B_MM|LTR|ERVK	-6230.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	3.25479881831217	3.39188962171052	3.57720330297989	3.21224905472129	3.58372337323917	3.91285039146024	3.86520642297592	4.23342262028853	1.73552147680596	0.000643475386949129	0.00943202935907167
Merged-chr8-57530826-4	chr8	57530745	57530945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 11 of 11)	Lx7|LINE|L1	19002.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	6.83346762945802	6.65784646806446	6.7939310484683	6.93085595698393	6.37510664861486	6.56863227051359	6.91426868098926	6.5629612820028	-0.285505780848958	0.196566927508936	0.49766951412921
Merged-chr1-64297023-4	chr1	64296921	64297121	+	947.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	-175632.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	5.31036932002348	5.1117058895993	4.74871406120924	5.29213398900404	4.71630361398689	4.60692396491248	5.28441045079969	4.82608605911566	-0.502440359034038	0.163915392305163	0.453822930059092
Merged-chr7-44823594-2	chr7	44823505	44823705	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171024, intron 1 of 8)	intron (NM_001171024, intron 1 of 8)	-6947.0	NR_033136	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	1.83179044548924	2.00206259496106	1.83190833714443	1.73699033745071	2.03400175675967	2.24471587426991	2.3185486840375	2.3280633860909	3.03947006136939	0.000774206200195116	0.0109587113803081
Merged-chr1-94658426-4	chr1	94658282	94658482	+	903.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-139060.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	4.8713404235892	4.86663646328156	5.1317440481975	5.53227868227303	4.67596040140106	4.36744040789779	4.84865452557889	4.5433518891887	-1.063669262043	0.00503687963761578	0.0478090486365987
Merged-chr15-80097692-4	chr15	80097589	80097789	+	883.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207708, intron 1 of 3)	intron (NM_207708, intron 1 of 3)	6355.0	NM_207708	20972.0	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	4.66579563050201	4.35814994090132	4.37821296581604	4.80916321257878	4.6962918234126	4.55337536132227	4.35916011987188	4.58763443053016	-0.050502622989433	0.894299289702845	0.960481560907683
Merged-chr11-69414192-3	chr11	69414113	69414313	+	898.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001017426)	promoter-TSS (NM_001017426)	-538.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	3.83537645978647	3.3639476529967	3.48362319769915	3.72186621209268	3.36431148817693	3.65677682940086	3.63154968299161	3.53836984687214	-0.228607780219803	0.653392515835787	0.854997557892684
Merged-chr5-92489234-3	chr5	92489163	92489363	+	945.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	16394.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	3.89563814151831	3.56342197680042	3.70580625981589	3.6982429934716	3.34474727824016	3.32816478204106	3.92136344599836	3.80227267795525	-0.29212779878117	0.576755060601835	0.813733368851894
Merged-chr1-171247665-3	chr1	171247585	171247785	+	997.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153064)	promoter-TSS (NM_153064)	-563.0	NM_153064	226646.0	Mm.21669	NM_153064	ENSMUSG00000013593	Ndufs2	CI-49kD	NADH dehydrogenase (ubiquinone) Fe-S protein 2	protein-coding	4.94854908436855	4.98967516436846	4.61970369455852	4.52587017814866	4.86392092037735	4.62036768521988	4.42158552766122	4.97777913724883	-0.0691268328451895	0.853077760943051	0.944678751070911
Merged-chr2-49472874-3	chr2	49472769	49472969	+	909.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172663, intron 1 of 13)	ORR1D2|LTR|ERVL-MaLR	21383.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	3.70826775511258	3.68727257243736	3.55483519719571	3.56367629948259	3.85233238183021	3.29100036554754	3.54124607655405	3.55293450652906	-0.125631248696894	0.805696837465122	0.925247575004516
Merged-chr9-63916093-3	chr9	63916026	63916226	+	937.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105933.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	4.13540162360937	4.06506534133955	3.64463853219836	4.09987333614894	3.80460007748524	3.70069449845039	3.89727159828805	3.75699241967827	-0.606541632752837	0.187140431911749	0.485386758118514
Merged-chr6-34689220-2	chr6	34689120	34689320	+	878.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 3 of 13)	intron (NM_001347100, intron 3 of 13)	-20224.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	2.65929784235747	2.70968229666816	2.79613748920789	2.86148269923564	2.62057770570563	2.90392535185506	3.07214316216227	3.03103602342899	0.671061452109009	0.298690846790157	0.610899252447462
Merged-chr11-3330695-4	chr11	3330608	3330808	+	906.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178149)	promoter-TSS (NM_178149)	-23.0	NM_178149	216505.0	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	4.08009527217511	3.8284410910481	4.0806875931561	4.374200461577	4.28872584323589	4.71098499585487	4.06354977805351	4.35144646904968	0.606988747043634	0.170678557198196	0.463886709030905
Merged-chr18-67252498-1	chr18	67252398	67252598	+	857.0	f0_balb.idr	Intergenic	Lx8|LINE|L1	-6668.0	NM_001357518	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	4.00517297148914	4.24986881795875	4.00578672722549	3.92302443295856	4.08836873676921	3.49246378242447	3.50345865506854	3.807682207652	-0.814399223436674	0.107535197833182	0.361609678518616
Merged-chr7-47150859-3	chr7	47150764	47150964	+	817.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17180.0	NM_013643	19259.0	Mm.4654	NM_013643	ENSMUSG00000030854	Ptpn5	Step	protein tyrosine phosphatase, non-receptor type 5	protein-coding	3.17834481555452	3.07296321542083	3.29744278981756	2.86684322246682	3.60335432855579	3.1604627267022	3.16726481651217	3.59679387283074	1.11866793221295	0.0530048394604345	0.240108920508768
Merged-chr4-148655164-4	chr4	148655078	148655278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085505, intron 3 of 10)	intron (NM_001085505, intron 3 of 10)	11861.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	5.019232606348	5.28087703553376	5.17211403833255	4.62844079481503	6.01418804836362	6.16638170831855	5.86498536977872	5.644175524411	1.57847914741201	2.79678931008774e-07	1.09260519375815e-05
Merged-chr14-105501095-4	chr14	105500997	105501197	+	984.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045921, intron 1 of 2)	intron (NR_045921, intron 1 of 2)	2309.0	NR_045921	74864.0	Mm.159344	NR_045921	ENSMUSG00000022116	4930449E01Rik	-	RIKEN cDNA 4930449E01 gene	ncRNA	4.70208862527781	5.23910113269551	5.0150998431782	4.90213095367499	5.19613877015506	5.15466947391015	5.34756704193107	4.94048996765421	0.364925996474152	0.259375338747331	0.571231383736746
Merged-chr2-160211875-4	chr2	160211794	160211994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	115600.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	5.01286218759107	5.11482832257445	5.33664874028919	5.83880518469798	4.91017950234429	4.66917337921127	5.3919513474169	5.36106792201503	-0.488423733807208	0.19710528214106	0.498410489804912
Merged-chr9-73001734-4	chr9	73001614	73001814	+	948.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001114328, exon 5 of 8)	exon (NM_001114328, exon 5 of 8)	16210.0	NM_001286544	72278.0	Mm.268475	NM_028181	ENSMUSG00000034563	Ccpg1	1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e	cell cycle progression 1	protein-coding	4.56011802055819	4.75632997983709	4.63695740993202	4.67404965296435	4.56032745024181	4.32830659122917	4.1838467936617	4.29819424084944	-0.680564636329682	0.0699445372682252	0.283004304313503
Merged-chr18-65416408-4	chr18	65416281	65416481	+	859.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	-14616.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	3.7259452362727	3.44542306895566	3.72652336676479	3.54303658928844	3.49106285703752	3.12750133996949	3.46236924973995	3.35835944220636	-0.803812634394416	0.131394463938779	0.403595846403071
Merged-chr17-64821092-4	chr17	64821065	64821265	+	905.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14906.0	NM_030031	78057.0	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	3.45826769852588	3.28288129339933	3.75837140521839	3.54491549608404	3.01647444742549	3.51718794925958	3.49946050626728	3.61515951622195	-0.314232125965266	0.577003188911296	0.813891082840518
Merged-chr5-107611432-3	chr5	107611339	107611539	+	780.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359917, intron 6 of 12)	intron (NM_001359917, intron 6 of 12)	13478.0	NM_001359916	231571.0	Mm.482420	NM_144911	ENSMUSG00000033773	Rpap2	AW060207	RNA polymerase II associated protein 2	protein-coding	3.31441287248111	3.5138565171657	3.17569868862954	2.95388642448657	3.80138180888587	4.14564494087789	3.64734813128458	3.60925453144532	1.87745155019154	0.000546059117434679	0.00828210993391925
Merged-chr6-59214142-6	chr6	59214054	59214254	+	830.194458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5284.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	3.91975140146857	3.63112559401214	3.6511148997402	3.46578946919541	3.12742913802443	3.66554876245102	3.16453341721714	3.43193086473134	-1.05959264189177	0.0578597862922199	0.252507769987365
Merged-chr15-99698839-4	chr15	99698757	99698957	+	858.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001289791, exon 9 of 10)	exon (NM_001289791, exon 9 of 10)	-3430.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	4.29490268847713	4.04211889303396	3.73572039861307	4.18956517803218	4.29978622820362	3.85213975107295	3.98268978784804	3.7339012256131	-0.236433152687131	0.617848559114351	0.835731112257238
Merged-chr2-93458861-4	chr2	93458762	93458962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	2989.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	7.19677396058623	7.6569712860192	7.78069389332927	6.77957350483331	7.68967983944458	7.43138944952108	7.18442717686656	6.85469246782837	-0.101415681588283	0.716369275453819	0.886605380747103
Merged-chr3-116184102-3	chr3	116183987	116184187	+	913.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54399.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	3.75552444693654	3.39522506474043	3.67153048785495	3.54583536558411	3.19302263529452	3.15385137298179	3.41047631024423	3.18235361155688	-1.31831653075896	0.0165317832712667	0.112389283807593
Merged-chr12-45011613-4	chr12	45011531	45011731	+	976.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144552, intron 2 of 5)	intron (NM_144552, intron 2 of 5)	62852.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	5.02315212697849	4.80124984916258	5.30187179928795	5.5626642193761	5.4033883255151	5.38228936798079	5.95373722570244	5.65042692358144	0.685731259671204	0.0456007186011688	0.218823808353846
Merged-chr2-155819950-2	chr2	155819850	155820050	+	969.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015528)	promoter-TSS (NR_015528)	-747.0	NR_015528	613262.0	Mm.330707	NR_015528	ENSMUSG00000074649	BC029722	-	cDNA sequence BC029722	ncRNA	3.31037720234155	2.9724755029543	3.19214017131865	2.97146323019966	3.33920876332451	3.24155819515098	3.40499717678471	3.65402336970684	1.14168174420147	0.0385297805134626	0.196920460053691
Merged-chr9-64793079-4	chr9	64792971	64793171	+	790.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17940.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	4.46245785104819	3.8317191904743	3.9444728255833	4.08713583712805	3.7437904852067	3.44713044399803	3.82618344222776	4.12538038108664	-0.809945267844476	0.107111598726222	0.361091999892665
Merged-chr19-32935769-3	chr19	32935700	32935900	+	825.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	178223.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	3.96984795308891	3.95254940748529	3.61981971821581	3.91571664858756	3.67398045239804	3.61563053429453	3.4240313137626	3.9679602587551	-0.561441449175111	0.25092820931158	0.562191344368554
Merged-chr9-51977600-4	chr9	51977506	51977706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14004.0	NM_007996	14148.0	Mm.1061	NM_007996	ENSMUSG00000032051	Fdx1	-	ferredoxin 1	protein-coding	5.64549284658438	6.33182386411672	5.52589765559364	5.20745824308211	6.55630123262329	6.64181197897599	6.07101474806092	5.94853849574496	0.924141406466988	0.00622413254272402	0.0557618036826373
Merged-chr7-4494309-4	chr7	4494193	4494393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029834, intron 3 of 21)	intron (NM_029834, intron 3 of 21)	7387.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	5.63627810182026	5.60976788588489	5.88870357281994	5.64450129697954	5.44877570369613	5.33011153508469	5.38961876989904	5.60772460729741	-0.418892156474548	0.122253963432641	0.38741395063409
Merged-chr1-153901462-4	chr1	153901282	153901482	+	892.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008131, intron 1 of 6)	intron (NM_008131, intron 1 of 6)	1453.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	4.31565756165768	3.85714607447598	4.06204883474184	4.09951033456488	3.89437360270483	4.18617198554917	4.04443013249688	3.85701794547658	-0.252282964996517	0.560308920308948	0.804393115014757
Merged-chr2-129588141-4	chr2	129588016	129588216	+	834.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4723.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	4.13657731072085	4.4962303195885	3.68743105125263	3.35455237812814	3.95188572536227	4.22210932644011	3.73045350039931	3.42516709996559	-0.357438664757319	0.541703325666621	0.793401254763463
Merged-chr2-159784881-4	chr2	159784814	159785014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-162427.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	6.72182466659766	6.49687676303337	6.85700662196202	6.65144715031667	6.53002367294826	6.68376430072513	6.35128841501839	6.26310611251213	-0.312971865912611	0.158320070881917	0.445153637183645
Merged-chr2-128828673-4	chr2	128828562	128828762	+	905.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355629, intron 5 of 18)	intron (NM_001355629, intron 5 of 18)	10359.0	NM_001355629	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	4.74156625258676	4.90769731658061	4.94616938502847	4.67372654554385	4.74711654145389	4.43752537815355	4.4344418479804	4.58260684600171	-0.527984369660494	0.139926634697174	0.415958856554476
Merged-chr17-35214814-4	chr17	35214736	35214936	+	859.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9485.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	4.41053501826282	4.35614753823672	4.19428867633694	3.6648231984593	4.53526959182386	4.36898665904932	4.12827669940872	4.32603975202442	0.428004378719734	0.34028817103185	0.649402624290582
Merged-chr1-60565559-2	chr1	60565459	60565659	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045513, intron 1 of 13)	intron (NM_001045513, intron 1 of 13)	1206.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	2.51722891780729	2.53314702630359	2.57863745468293	2.12407681063381	2.51937159451466	2.41834474299135	2.30863896720779	2.31415494093449	-0.292680802105271	0.70390914735377	0.880925455128412
Merged-chr11-93987184-3	chr11	93987043	93987243	+	854.650024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8948.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	3.20017714213187	3.4079275149006	3.34295530564463	3.43626043343429	4.10137073532211	4.01583662885481	3.87432191321048	3.79703924196127	1.82328689946354	0.00027970860119455	0.00479282102176862
Merged-chr2-148468271-2	chr2	148468171	148468371	+	725.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24736.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	3.34683516440906	3.11657726739882	3.45336405782531	2.68589057657074	3.4059838409761	3.15152840601289	3.66697448130833	3.03628820140542	0.545319931858724	0.401816069716195	0.699361618043386
Merged-chr7-101051457-4	chr7	101051341	101051541	+	947.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39388.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	4.56965362783689	5.07619639855061	4.57037575233861	4.67183355369298	4.86771445676606	4.70298457865276	4.27408062040461	4.52502251913728	-0.257684573429478	0.505733711499697	0.771570460847431
Merged-chr14-20253484-3	chr14	20253388	20253588	+	869.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15674.0	NM_029006	74571.0	Mm.105571	NM_029006	ENSMUSG00000023387	Kcnk16	4731413G05Rik|TALK-1|TALK1	potassium channel, subfamily K, member 16	protein-coding	4.00277161302393	4.50609861227485	4.34829224784148	4.14544973823956	3.52225248579404	3.91165816181823	3.65436389492711	4.09616000172745	-1.2508566631023	0.0089900693965497	0.073120281442626
Merged-chr2-163766407-4	chr2	163766262	163766462	+	852.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16123.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	4.47353234702274	4.20316106179243	4.24566533322377	4.62603316692982	3.31499687098997	3.86515124367249	3.89768934400553	3.73971490557417	-1.95842288606867	8.17569731493487e-05	0.00171236906217308
Merged-chr4-6444029-4	chr4	6443910	6444110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	10261.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	5.10078359182964	5.01448911601526	5.13392323582825	5.16153610508274	5.10902650547725	5.13845159339806	5.04399716371865	5.09817180721714	-0.0194648377575753	0.947828524483565	0.981348536548879
Merged-chr3-88382102-2	chr3	88382002	88382202	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2364.0	NM_007541	12096.0	Mm.389459	NM_007541	ENSMUSG00000074483	Bglap	BGP|Bglap1|OC|OG1|mOC-A	bone gamma carboxyglutamate protein	protein-coding	2.89004918945624	2.83841055295431	2.83007962125792	2.5991869829169	2.74634669049868	2.93829834134057	2.81983321184085	2.69913322664283	0.0771583723140791	0.902887284139196	0.963965471174667
Merged-chr11-107321713-4	chr11	107321629	107321829	+	753.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	polypurine|Low_complexity|Low_complexity	-132348.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	3.78665188935998	3.63960440917378	3.32293232637226	3.68524321876798	3.9082450807986	3.63247754208245	3.81845654660534	3.83278199332221	0.544372081846028	0.257861777094732	0.569693582005417
Merged-chr7-108930192-4	chr7	108930071	108930271	+	847.8583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175532)	promoter-TSS (NM_175532)	-13.0	NM_175532	244202.0	Mm.37991	NM_175532	ENSMUSG00000049709	Nlrp10	6430548I20Rik|Nalp10|Napl10|PAN5|Pynod	NLR family, pyrin domain containing 10	protein-coding	3.82644664984931	3.85342566921142	4.00542152379355	4.03467500394266	4.5203500956637	4.43525662766549	4.90055178600532	4.65038229548274	1.65363949102203	5.44679079766848e-05	0.00121840704647154
Merged-chr6-51432802-2	chr6	51432702	51432902	+	787.25	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010903, exon 1 of 4)	5' UTR (NM_010903, exon 1 of 4)	133.0	NM_010903	18025.0	Mm.42138	NM_010903	ENSMUSG00000029832	Nfe2l3	Nrf3	nuclear factor, erythroid derived 2, like 3	protein-coding	3.06695458709227	3.1632075754034	3.34268757560912	2.8335955375499	3.19224360991817	3.04740275231916	3.05640128271313	3.06580404928116	-0.0392707734048837	0.947216608200591	0.981107020262516
Merged-chr17-84203340-3	chr17	84203274	84203474	+	783.31665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 36 of 37)	intron (NM_183021, intron 36 of 37)	-15427.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	3.12555254109188	3.60489200786279	3.45132867078337	3.27548802025959	3.05631469532179	3.17395291212275	2.91852642564758	2.77519408823868	-1.55805154307976	0.0142579015486856	0.101182769126011
Merged-chr17-83830736-4	chr17	83830634	83830834	+	943.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025325)	TTS (NM_025325)	16056.0	NM_025325	107766.0	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	4.8229203149768	4.57766861129546	4.74550318170369	5.19864964197324	4.77847816115412	4.70774351171144	5.26669361078605	5.12260403474159	0.218803464658288	0.555954221980364	0.801730133825154
Merged-chr17-56884506-4	chr17	56884396	56884596	+	864.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030141, intron 10 of 13)	PB1D7|SINE|Alu	8863.0	NM_030141	78625.0	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	3.714843355823	4.05117826265329	4.14173724411282	4.15238333598644	3.97717336044542	4.06913993574513	4.03007202111637	4.59179329086354	0.398153126292213	0.381128868037399	0.683465744746471
Merged-chr18-35740047-4	chr18	35739876	35740076	+	809.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001289592, exon 2 of 8)	5' UTR (NM_001289592, exon 2 of 8)	578.0	NM_028261	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	3.48775306146544	3.20955314247561	3.43385905686052	3.28111675474484	3.58512777543461	3.3681292060521	3.62264922882693	3.43199251458785	0.546201622240716	0.282001742888968	0.594145218360581
Merged-chr4-118428712-4	chr4	118428597	118428797	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039175, intron 1 of 6)	intron (NM_001039175, intron 1 of 6)	604.0	NM_019422	54325.0	Mm.282096	NM_019422	ENSMUSG00000006390	Elovl1	AA407424|BB151133|Ssc1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	protein-coding	4.2876174765798	4.55044366994929	4.42513000403962	4.41542855289947	4.69299891083573	4.26206425362851	4.40525987747034	4.79418029557893	0.314460850051015	0.407348733722967	0.703634710550806
Merged-chr14-105923028-3	chr14	105922925	105923125	+	977.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26206.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	4.12142464286622	4.52147682040025	4.41780133064857	4.25474513520511	3.50400357166914	3.79667352447558	4.15005677357568	4.29655850816903	-0.953114934553385	0.048262645753255	0.226721677802992
Merged-chr17-57105321-4	chr17	57105237	57105437	+	936.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009404)	promoter-TSS (NM_009404)	-48.0	NM_009404	21950.0	Mm.41171	NM_009404	ENSMUSG00000035678	Tnfsf9	4-1BB-L|4-1BBL|AI848817|Cd137l|Ly63l	tumor necrosis factor (ligand) superfamily, member 9	protein-coding	4.68908543550204	4.78083891078323	4.26503607990125	4.35292462940544	5.80190622726206	6.02721706370071	5.55805644716418	5.04672971748374	2.10974615528285	7.99392071587564e-09	4.30733749156179e-07
Merged-chr6-121336316-2	chr6	121336216	121336416	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144512, intron 13 of 14)	intron (NM_144512, intron 13 of 14)	-6760.0	NM_001347433	14411.0	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	2.72834924984099	2.52407289887145	2.59057007535543	2.48467749195376	3.01964728100871	2.83673588382772	2.7824598950512	3.01929936941723	1.67371264839505	0.00876523987817816	0.0717787631487395
Merged-chr2-167690674-4	chr2	167690566	167690766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110334)	promoter-TSS (NR_110334)	-93.0	NR_110334	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	6.11944664080249	6.07302384899129	5.99300179886836	6.29542620167167	5.8841750953542	5.87107815226089	6.18588481554451	6.33770514169336	-0.0874608306681161	0.728019670515689	0.891779294267982
Merged-chr4-124657515-4	chr4	124657399	124657599	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011141)	promoter-TSS (NM_011141)	-147.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	4.8616092612199	5.1551337994582	5.11584056905761	4.91429291256516	5.50203986122834	5.1886928744315	5.35433583448998	4.93673474255968	0.48939430820372	0.123987136127902	0.390765284926741
Merged-chr11-17000577-4	chr11	17000457	17000657	+	926.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	8161.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	4.44914459221481	4.55365075191264	4.20488743222216	4.88686576264785	4.99731779804844	4.33309754262177	4.55635191198598	4.79655037416798	0.296312749096332	0.474614208369388	0.751809608045503
Merged-chr12-34723272-4	chr12	34723164	34723364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	193831.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	6.64861419264526	6.75039256572139	6.83301258831138	7.08180508037486	6.53554432977325	6.50044425435483	6.27024083224318	6.2979660815535	-0.636867666718679	0.00438432431572275	0.043074095302806
Merged-chr2-23006426-4	chr2	23006317	23006517	+	975.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	Lx8|LINE|L1	33824.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	4.69948071134903	4.6764593194225	4.89207616304953	4.98900707783512	4.96655243685406	4.95477870841624	5.00256150688551	4.95806336625161	0.269449015580896	0.407323988688025	0.703609042149807
Merged-chr16-56771531-3	chr16	56771422	56771622	+	878.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172825, intron 4 of 15)	intron (NM_172825, intron 4 of 15)	24336.0	NM_172825	239853.0	Mm.258979	NM_172825	ENSMUSG00000022755	Adgrg7	9130020O16Rik|Gpr128	adhesion G protein-coupled receptor G7	protein-coding	3.70955074361294	4.06415104689123	3.59948165917996	3.69019586332698	3.53468227252502	3.65727686916855	3.84319969522798	3.8096848812756	-0.19577264464881	0.684055344425471	0.87054362269333
Merged-chr15-54929626-4	chr15	54929490	54929690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9444.0	NM_001285994	18606.0	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	8.37426832368191	8.21387257593786	8.52556379701798	8.27735925610192	8.30956532836099	8.28797218802282	8.5941698144112	8.33788921412429	0.0489463995171648	0.766750861563386	0.908716130899153
Merged-chr17-29070799-4	chr17	29070712	29070912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036469, intron 1 of 1)	intron (NR_036469, intron 1 of 1)	8314.0	NR_036469	100504267.0	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	6.72458307584515	7.02366320911272	7.08001851900693	6.87395147027994	6.53292823136613	6.69716124044078	6.61645285626635	6.15997871188933	-0.5919523095458	0.00788886467334429	0.0665388669965604
Merged-chr10-80506458-4	chr10	80506365	80506565	+	779.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139226, intron 1 of 1)	intron (NM_139226, intron 1 of 1)	11559.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	3.72606233185777	3.80287672127813	3.67221997559645	3.41093123009633	3.92561271708412	3.79125438596557	3.76304187734063	4.00922478682128	0.687044511633273	0.13981042094014	0.41578065905212
Merged-chr11-5522146-4	chr11	5522007	5522207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013842, intron 2 of 4)	intron (NM_013842, intron 2 of 4)	1466.0	NM_001271730	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	5.19454999017693	5.75136796916151	5.19542496864376	5.31121155768638	5.43362773559291	5.37156185239498	5.38341409752948	5.25703863142506	-0.0371950903197157	0.901939798168615	0.963609230228517
Merged-chr4-3875156-4	chr4	3875014	3875214	+	878.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3009.0	NM_020021	17451.0	Mm.459300	NM_020021	ENSMUSG00000078365	Mos	c-mos	Moloney sarcoma oncogene	protein-coding	3.85310525236315	3.75579684392144	4.33392734657398	3.83358019833057	4.01846031254769	3.74180493110285	3.88935451489307	4.17700420761962	0.0337603202300798	0.942070554484041	0.979058454594117
Merged-chr13-67778665-3	chr13	67778571	67778771	+	966.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-1022.0	NM_028402	72958.0	Mm.53849	NM_028402	ENSMUSG00000090659	Zfp493	2900054J07Rik|Rslcan12	zinc finger protein 493	protein-coding	3.5470379157376	3.75335343137328	3.54749003855145	3.01520876082279	5.54586146751589	5.02952314078906	5.46819641095702	5.14580672185406	4.86570604267711	2.74667789938816e-25	1.79363106606009e-22
Merged-chr1-172016224-2	chr1	172016124	172016324	+	893.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033509, intron 1 of 7)	intron (NM_033509, intron 1 of 7)	11071.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	2.96600362115092	3.27937760978336	3.40630960096653	3.1925811921334	3.43142278047446	3.40798146439069	3.44410214405331	3.4043762875652	0.725797498969952	0.173728691662456	0.467906559098001
Merged-chr9-89204451-4	chr9	89204352	89204552	+	782.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007534, intron 1 of 1)	intron (NM_007534, intron 1 of 1)	5179.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	4.2828099154661	4.47572750378648	4.14469127956359	3.8808970088436	4.08984941944551	4.45540564841673	4.30677954474564	4.32383223605889	0.226052815264217	0.592907484664401	0.822423445862576
Merged-chr4-128840568-4	chr4	128840436	128840636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34424.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	5.88987035312421	5.3048560214053	6.15045058997953	5.91602294975589	5.78588209765097	5.38528446747238	6.06381349584095	5.72106759960062	-0.138123446658741	0.655029512843847	0.855853767547996
Merged-chr7-139684744-3	chr7	139684616	139684816	+	918.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302546)	promoter-TSS (NM_001302546)	-901.0	NM_001302546	212124.0	Mm.425507	NM_177212	ENSMUSG00000049571	Cfap46	9330101J02Rik|E030019B06Rik|Gm170|Ttc40	cilia and flagella associated protein 46	protein-coding	3.98109651098358	3.73518499882203	3.93707576552264	4.14853224663644	3.42594228229035	3.62638808047981	3.67240581696773	3.73876794695693	-1.07409018707555	0.0256182482755664	0.151000438390737
Merged-chr5-76565529-4	chr5	76565432	76565632	+	971.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359370, intron 17 of 19)	B3A|SINE|B2	-26182.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	5.46945418456177	5.28549661088861	4.96588175654874	5.24955910588356	5.5589567796271	5.25350102228428	5.44274841260743	4.84152117726293	0.104217952937386	0.750648333048344	0.901855648088396
Merged-chr6-31224659-3	chr6	31224555	31224755	+	971.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040260, intron 1 of 5)	L2c|LINE|L2	4304.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	4.19834291420635	4.20672355175469	3.7410703987886	4.48966388697702	3.88487360445067	4.32322727851178	4.04506815310852	4.01085978739742	-0.342267341562135	0.460939216085804	0.742827215671333
Merged-chr2-30171632-4	chr2	30171592	30171792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007931, exon 1 of 3)	exon (NM_007931, exon 1 of 3)	168.0	NM_007931	13804.0	Mm.474473	NM_007931	ENSMUSG00000015337	Endog	-	endonuclease G	protein-coding	5.18706792631205	5.62311300328683	5.76012151797349	5.04113960984634	5.49599311876957	5.33146576510121	5.41004468708487	5.51563458261781	0.0357875627031307	0.91028067786569	0.966671146059764
Merged-chr2-25588773-4	chr2	25588663	25588863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024616, intron 7 of 14)	intron (NM_001024616, intron 7 of 14)	-8664.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	6.84281391856713	6.84551066713583	6.99883443775251	6.88649167129772	6.76691391919198	6.90578107980417	6.9874895056496	6.70928196723151	-0.0704204435515265	0.71927851545553	0.887864356028823
Merged-chr19-38021457-1	chr19	38021357	38021557	+	1000.0	f0_balb.idr	intron (NM_001302140, intron 3 of 53)	intron (NM_001302140, intron 3 of 53)	22120.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	2.94856341884395	3.04718903984408	3.27040948843164	3.27578546294133	2.9592166945478	2.70635917486025	2.59725804646106	2.75082131568313	-1.72722830169871	0.0138745681879672	0.0993739071293334
Merged-chr9-63043708-3	chr9	63043531	63043731	+	718.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62752.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	3.03650636503193	2.94384883430621	3.15942121690459	2.9757566745661	3.2505432460779	3.21040487980688	3.20395706221164	3.32189658117361	0.871635250440047	0.110139578222607	0.366543156831258
Merged-chr13-37557914-4	chr13	37557825	37558025	+	892.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	212580.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	4.26566418651668	3.89167437835042	3.90414548747818	4.16992145358307	4.12979728960266	3.85622017454718	4.08016163002517	3.90195650880294	-0.183990956163352	0.672825777178474	0.865428204737913
Merged-chr10-96263839-3	chr10	96263735	96263935	+	971.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37628.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	3.90817149585911	4.03463529502787	3.54468049286595	3.90076977834849	3.6302074781233	3.46559163210421	3.69857772070913	3.76298470811356	-0.660134295717654	0.172689658296104	0.466237186612744
Merged-chr7-101882472-4	chr7	101882390	101882590	+	969.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291353, intron 1 of 5)	intron (NM_001291353, intron 1 of 5)	1165.0	NM_001291353	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	4.11554243361492	3.99667944515419	4.37969726515314	4.48442715127257	3.8365151773547	3.96954043131686	4.31929501531895	4.49031164589007	-0.225869441377994	0.617760514758766	0.835707307283226
Merged-chr9-41154199-4	chr9	41154094	41154294	+	934.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	3868.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	4.61977991469701	4.85180920016868	4.84254842810627	4.42883035667881	4.90662262826392	4.48219037964929	4.67680939521911	4.57651123181508	-0.00601854755356997	0.986991352304084	0.995254964946625
Merged-chr10-58393232-4	chr10	58393136	58393336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201242, intron 1 of 9)	intron (NM_201242, intron 1 of 9)	-1137.0	NM_001193303	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	7.16133709920308	7.26148100258732	7.4766735217631	7.49958774572067	7.57367831729526	7.58709291098614	7.30329302628742	7.37534232848846	0.137771311967019	0.467551423823218	0.747026558181345
Merged-chr2-84655982-4	chr2	84655887	84656087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355064, intron 1 of 18)	B1_Mur2|SINE|Alu	2990.0	NM_001355064	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	6.62819681145663	6.59687961122804	6.6906298100199	6.91173341705241	6.73889551353628	6.40544910313015	6.72882963266687	6.86641141164267	-0.036420851289048	0.867521451408523	0.950331199983684
Merged-chr2-164009233-3	chr2	164009120	164009320	+	873.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018753, intron 1 of 5)	intron (NM_018753, intron 1 of 5)	14023.0	NM_018753	54401.0	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	3.4820203037276	3.25483601795337	3.26933821773198	3.31405544589691	3.23377404647056	3.32154752716989	3.00567619716329	3.37849806873639	-0.330865547975549	0.545087164995927	0.795757723347317
Merged-chr1-58720223-4	chr1	58720113	58720313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	6927.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	6.74645006800588	7.15910925882792	6.81783057784966	6.60417028824535	6.71118481058763	6.89485248543299	6.49390890412201	6.46995549166075	-0.268375887622986	0.248364449097445	0.559458625978892
Merged-chr4-53109458-1	chr4	53109358	53109558	+	772.0	f0_balb.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	50437.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	3.80276507777012	3.52178632359752	3.60852473520423	3.86387267665898	3.72025189398339	3.49195940663904	3.36739825363603	3.37707689401557	-0.658921073993919	0.200432814730987	0.502485838102051
Merged-chr2-52577833-4	chr2	52577714	52577914	+	841.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	-19203.0	NM_001285427	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	4.49434546645734	3.95203295975954	4.53100643577339	4.41474379745095	3.69769804208183	4.24208553165778	4.09781802915406	4.16114498343672	-0.782440548885391	0.0816458686803513	0.310077435001533
Merged-chr1-156986432-4	chr1	156986317	156986517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46791.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	6.72605354790549	7.06274197136087	6.74226525660837	6.82429167093504	7.01506334780803	6.88864043600317	7.13444450513403	6.89254273216956	0.196293328017439	0.328528940349927	0.6400186508243
Merged-chr6-42352864-2	chr6	42352764	42352964	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289618, intron 4 of 9)	intron (NM_001289618, intron 4 of 9)	3036.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	3.87959671295476	3.37491813586274	3.40400358483703	2.97447984672771	3.15998190072351	3.33534934677403	3.20775264931815	3.7526896506948	-0.20756567663635	0.735208247581571	0.895431262597044
Merged-chr11-3452375-4	chr11	3452266	3452466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028317)	promoter-TSS (NR_028317)	-71.0	NR_028317	71523.0	Mm.72795	NM_027820	ENSMUSG00000034587	8430429K09Rik	-	RIKEN cDNA 8430429K09 gene	ncRNA	7.93199667512215	8.18872148910341	7.68938213510158	7.95849877219244	8.18299139715733	8.08194253536623	8.08654413076338	7.94220103549508	0.15617943087078	0.376389780369213	0.679172347306585
Merged-chr10-12923193-4	chr10	12923093	12923293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038027)	promoter-TSS (NR_038027)	-66.0	NR_038028	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	5.5338194875249	5.6371790617681	5.45292505710295	5.66921649490607	5.15945078927898	5.31301914778726	5.42566923724946	5.44911502659637	-0.441962080421618	0.112830061110169	0.371420623567672
Merged-chr4-102646359-6	chr4	102646239	102646439	+	803.986084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56496.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.10611724398022	3.59927158067625	3.98104716779642	3.68153622015416	3.91412556065305	3.48915846351411	3.49417543843331	3.97851669462714	-0.310112743964222	0.544891574218085	0.795575389591555
Merged-chr7-19496388-4	chr7	19496304	19496504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11927.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	6.61479315812546	6.54001758251155	6.87573172240842	6.80750595601421	6.42816166321571	6.32046763298082	6.23586266023609	6.26343706725062	-0.586304899945038	0.00723194991072895	0.0623728296008453
Merged-chr15-31465959-1	chr15	31465859	31466059	+	742.0	f0_balb.idr	intron (NM_172606, intron 23 of 25)	intron (NM_172606, intron 23 of 25)	-12270.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	3.70169348676908	3.46816121738772	3.38414085909256	3.67541234486305	3.45470337630114	3.36989929277503	3.43021790066418	3.65229579081471	-0.295224383197423	0.559633459960889	0.803980525375318
Merged-chr14-103070212-4	chr14	103070136	103070336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033242)	promoter-TSS (NM_001033242)	20.0	NM_001033242	211286.0	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	8.51338705225935	8.33111761249981	8.06019697015953	8.39721135510863	8.42657640824289	8.53539594762796	8.50359034569446	8.27991376355325	0.127867200295042	0.447153695679513	0.732772024974607
Merged-chr7-141017522-2	chr7	141017422	141017622	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033632)	promoter-TSS (NM_001033632)	-630.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	3.93618410880544	3.77627973474653	3.78405613141692	3.36018819542579	3.69076051687905	3.96010109570389	4.25131026396162	4.02684052665711	0.782790790371601	0.10880126902165	0.364112826505448
Merged-chr1-97319788-4	chr1	97319703	97319903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-191500.0	NM_028942	74441.0	Mm.60362	NM_028942	ENSMUSG00000026331	Slco6c1	4933404A18Rik|C79179	solute carrier organic anion transporter family, member 6c1	protein-coding	6.67807179859194	6.34853462605062	6.65107924947096	6.98852733164603	6.04987034974485	5.96625671835985	6.27664451079897	5.83518407753513	-0.9789868213289	0.000111544540830822	0.00222274044563189
Merged-chr2-103567120-4	chr2	103567019	103567219	+	869.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178890, exon 1 of 17)	exon (NM_178890, exon 1 of 17)	809.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	4.25487488875513	4.24150512814554	4.5094067312513	4.11964160805371	4.2684229943367	4.51825871213063	4.28238847324112	4.58076863370728	0.328503612223499	0.399894393708889	0.697931153338137
Merged-chr12-85437744-4	chr12	85437649	85437849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36141.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	6.77853889650885	6.96790782308066	6.54010100562704	6.77793180877183	7.17967047833367	6.94207398216681	6.86930307125403	7.05983607801537	0.343408238761937	0.0950851187705823	0.337391010417312
Merged-chr14-54606035-4	chr14	54605937	54606137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028890)	promoter-TSS (NM_028890)	-129.0	NM_028890	74359.0	Mm.79815	NM_028890	ENSMUSG00000022179	4931414P19Rik	Rtfc	RIKEN cDNA 4931414P19 gene	protein-coding	5.78123008809932	5.78909611720897	5.73373589292432	5.58411007175044	5.60485634397285	6.0013308433366	5.88703579609104	5.51584013795591	0.0733165832479842	0.784875427714218	0.91629732769018
Merged-chr13-56703672-4	chr13	56703578	56703778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164042)	promoter-TSS (NM_001164042)	10.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	5.93806176598834	6.05107363912103	5.77955449556628	5.44039492885283	5.93644518401114	5.97847417332051	5.77406328371935	5.4128888661101	-0.0195299396770866	0.946975092282697	0.98101762641852
Merged-chr14-103051588-4	chr14	103051482	103051682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008392, intron 4 of 4)	intron (NM_008392, intron 4 of 4)	4570.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	6.14539096718196	6.12035958744654	5.641836616033	6.41420121627103	6.30915740868626	6.38408604686203	6.7008249482045	6.51781306792554	0.529699510195238	0.0459093997534694	0.219919588468417
Merged-chr1-156674373-4	chr1	156674283	156674483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023141)	promoter-TSS (NM_023141)	-44.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	6.94157656504552	7.05307877485254	6.80945916548597	7.03358869935322	6.6147956947823	6.65119230829028	6.84302661386305	6.81860773775261	-0.334940590245266	0.0929161925561821	0.333552636168877
Merged-chr3-95994010-4	chr3	95993909	95994109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023320, intron 2 of 5)	intron (NM_023320, intron 2 of 5)	1830.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	5.96704388366929	6.01279201893525	5.9458729538348	6.04645937961176	5.98087000672299	6.2477880030645	5.74915625919467	5.82437264514401	-0.0562121755027847	0.821081092271692	0.931492956341952
Merged-chr16-49888370-4	chr16	49888281	49888481	+	936.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 4 of 9)	Tigger6a|DNA|TcMar-Tigger	32727.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	5.4126416934126	4.95564531197969	5.00146279612139	5.59447408496609	4.83823895034757	4.73199365303588	4.75146064290366	4.99807176435523	-0.872184627245294	0.012111683522686	0.0905374418673875
Merged-chr3-126695538-4	chr3	126695439	126695639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 3 of 18)	intron (NM_001025438, intron 3 of 18)	98588.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	5.98920565971328	5.95622968209898	6.25342473463923	6.82291913605747	6.49795555329504	6.39081168109322	6.54921423901162	6.82620685050849	0.361180365220369	0.207688633748214	0.511718150926314
Merged-chr15-72838434-4	chr15	72838324	72838524	+	992.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164641, intron 17 of 17)	MTEa|LTR|ERVL-MaLR	-28100.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	4.78132702751888	4.86838589919709	5.00280942825177	4.82979773354638	5.24911920697279	4.74562534096724	5.16486745420906	5.12762896330216	0.442379836853921	0.170080215264515	0.46307659016619
Merged-chr10-121471756-4	chr10	121471676	121471876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	4474.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	6.37439727926306	6.05359159767798	6.91474591733754	6.90196285171262	5.84142767284827	5.53256899363505	5.91709725341295	6.2998480001708	-1.04280411615288	0.000631177899799112	0.00929003551071154
Merged-chr2-164681686-4	chr2	164681584	164681784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-3423.0	NM_001012704	408190.0	Mm.376205	NM_001012704	ENSMUSG00000067704	Wfdc13	Wfdc13l1	WAP four-disulfide core domain 13	protein-coding	6.54466464978933	6.1891663683277	6.56168663327844	6.77209483650019	6.38080017728052	6.3342271645058	6.55915816229335	6.5570014289475	-0.125351794789549	0.592866106736356	0.822423445862576
Merged-chr1-164061450-4	chr1	164061337	164061537	+	847.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011346)	promoter-TSS (NM_011346)	-639.0	NM_001164059	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	3.78442446799092	3.89652495772659	3.61664511161311	3.88802819788279	3.88280980116454	3.79328954897719	3.76979062465844	4.14594767076368	0.277319511822647	0.541450812131741	0.793272720948538
Merged-chr1-72123814-4	chr1	72123713	72123913	+	791.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88494.0	NM_001005423	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	4.35389162359253	4.21221122081475	4.62831622444017	4.16017619100876	4.20420920696771	4.52722918643485	4.4968320949679	4.30749081257915	0.109602701555667	0.782437354347635	0.91529005173258
Merged-chr13-97442508-4	chr13	97442403	97442603	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110432, intron 1 of 1)	intron (NR_110432, intron 1 of 1)	7533.0	NR_110432	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	4.81832787146484	4.97579046486071	4.99984983797705	5.26299995242196	5.25861786230803	4.64786151805231	4.83446533697349	4.92729899822166	-0.169382409220383	0.629036749569293	0.84192111463855
Merged-chr10-94478018-4	chr10	94477929	94478129	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-36828.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.50892667948142	5.25300784924147	6.03469066666135	6.1956857241138	5.35170472572001	5.26030205248982	5.56373249933907	5.50600613455918	-0.663457926220044	0.0446860076543802	0.215845910615576
Merged-chr3-19310232-4	chr3	19310151	19310351	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122759, intron 1 of 12)	intron (NM_001122759, intron 1 of 12)	1071.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	4.32444010390312	4.32763282257852	4.36794107772784	4.75322543078399	4.33878297658565	4.15823533747546	4.50452842448154	3.72816725481146	-0.596262671703626	0.186628882545213	0.484625049457725
Merged-chr16-95929779-4	chr16	95929718	95929918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040484)	promoter-TSS (NR_040484)	-741.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	5.91471428056571	5.37802865882337	5.64293564677175	5.70830571092817	5.27317254202854	5.29808057942166	5.96396394807808	5.47670430394084	-0.241980921995151	0.435316390426052	0.724523208691715
Merged-chr3-100999155-3	chr3	100999063	100999263	+	867.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167906, intron 8 of 8)	intron (NM_001167906, intron 8 of 8)	-29500.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	3.98450773482795	3.69436778881977	3.73500783501476	3.74999816015785	3.7553872615707	3.96187756796142	3.9217320846814	4.02720598519728	0.353907658541979	0.424932486163429	0.716567599871949
Merged-chr9-48532903-4	chr9	48532789	48532989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	37546.0	NM_001004191	434402.0	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding	6.61436944278185	6.25788118697306	6.28748307952334	6.50631782134554	6.54189092384925	6.36319818443728	6.86464044328287	6.640822655568	0.272336125983335	0.234678505963285	0.544535838308798
Merged-chr1-153895182-4	chr1	153895093	153895293	+	743.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3547.0	NM_178244	240819.0	Mm.453236	NM_178244	ENSMUSG00000047053	Teddm1a	Epdd1|Teddm1|e9-1	transmembrane epididymal protein 1A	protein-coding	4.21787788650889	3.80275046304357	3.44678852509039	3.75682887870122	4.02649732412679	3.87786484708827	3.79600394546203	4.17656930287893	0.409120298229274	0.400123089953476	0.698065183455439
Merged-chr18-84682038-4	chr18	84681938	84682138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289531)	promoter-TSS (NM_001289531)	21.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	7.89555455202881	8.15413379066046	7.69768492702113	7.87330022889108	8.20817135315083	8.24624156050834	8.27362557988168	7.70959372338007	0.274785443052099	0.162340112880794	0.45151636819092
Merged-chr11-70446877-4	chr11	70446779	70446979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5052.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	7.22355937585991	7.30947146502868	6.91441418529082	6.98684038745745	7.01057445376338	7.02219909399413	7.07857146724617	6.93631210957442	-0.139948091167056	0.478183186211175	0.754290422199389
Merged-chr15-6403605-3	chr15	6403510	6403710	+	715.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	(TTTTG)n|Simple_repeat|Simple_repeat	16862.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	3.59632783712055	3.46410891909606	3.69866538001015	4.08207447804936	3.36721607091829	3.34504819221327	3.47325196335574	3.59480820587463	-0.974802300642363	0.0674364276586977	0.277127699291684
Merged-chr6-72155246-4	chr6	72155086	72155286	+	836.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011375)	TTS (NM_011375)	-31989.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	3.07211744317357	3.46241855342795	3.37383669664359	3.08841521676916	3.12586033476122	3.48895104313751	3.30579211139441	3.25971839345329	0.152417731333915	0.784703794188586	0.916232203647404
Merged-chr7-24300948-4	chr7	24300819	24301019	+	963.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001199321)	TTS (NM_001199321)	-1370.0	NM_009561	22719.0	Mm.12832	NM_009561	ENSMUSG00000050605	Zfp61	-	zinc finger protein 61	protein-coding	4.22484926046212	4.13607736537403	4.92983233409976	4.27950563496046	4.56320054314689	3.9705771174893	4.15946516170502	4.12520314712273	-0.458388866107746	0.32168885938781	0.633233286881578
Merged-chr1-156558716-4	chr1	156558620	156558820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009595)	promoter-TSS (NM_009595)	-67.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	7.04036650170361	6.86418767281954	6.33380482833792	6.86888792508126	7.25661350774302	6.99566499537425	7.39436051693779	7.01232883888456	0.514481397754482	0.0240561871407158	0.144754023542904
Merged-chr4-147337031-2	chr4	147336931	147337131	+	973.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	L1_Mus1|LINE|L1	161165.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	3.34934495100071	2.82784482911312	3.34985443369399	2.73014994621496	2.88534236586079	3.52192781827298	3.22457396551596	3.40029276003957	0.679358482326069	0.299619945379512	0.611867683034523
Merged-chr6-21958278-4	chr6	21958178	21958378	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311061, intron 4 of 11)	intron (NM_001311061, intron 4 of 11)	8663.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	4.1697755517891	4.11678854184153	3.80966280084356	4.20781126013781	4.35800895385198	4.29557855403595	4.05986909356091	4.07470249933954	0.288964467013065	0.491837569037618	0.763211244010156
Merged-chr4-148449150-4	chr4	148449024	148449224	+	798.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020009, intron 1 of 57)	intron (NM_020009, intron 1 of 57)	542.0	NM_020009	56717.0	Mm.21158	NM_020009	ENSMUSG00000028991	Mtor	2610315D21Rik|AI327068|FRAP|FRAP2|Frap1|RAFT1|RAPT1|flat	mechanistic target of rapamycin kinase	protein-coding	3.74226688531583	3.83013535094778	3.7968439666402	3.61358353160435	4.05549116879665	3.7459504646308	4.10327378179443	4.03512111571218	0.731539485332149	0.0967625508061323	0.340736345623376
Merged-chr18-60740578-4	chr18	60740489	60740689	+	880.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	6157.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	4.42070018115884	4.70543336975916	4.654473227711	3.71776803563178	4.44960050528023	4.36813983591197	4.55938632763022	4.33051734434464	0.0129876969118072	0.977306505610568	0.991888117862217
Merged-chr10-93268524-4	chr10	93268435	93268635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001322265, intron 2 of 4)	L1MB3|LINE|L1	42624.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	6.9544806332763	6.86159356992411	7.00524540777511	7.00177299864412	6.64113417473377	6.99910765679401	6.81554689593409	6.83162377560632	-0.196295685726673	0.32137036511751	0.633111551190032
Merged-chr13-113515281-4	chr13	113515188	113515388	+	990.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12444.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	4.93128728506913	4.95071394671551	5.12979359929788	5.40207776959152	4.88336013906333	4.54627202088783	4.97723634562753	4.92880041585501	-0.56360724256285	0.100912514225543	0.348699055782316
Merged-chr10-121366671-3	chr10	121366582	121366782	+	941.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	PB1D9|SINE|Alu	1592.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	3.7991592983514	3.5582098451889	3.44837859772181	3.50697141506442	4.17260294501483	3.81267560135395	4.01544695913967	4.0315340334529	1.2864483016469	0.004758932540759	0.0458246833493892
Merged-chr5-147825798-4	chr5	147825699	147825899	+	722.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34829.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	3.78093025532686	3.59091053209006	3.61027428208428	3.72112218584082	4.06566656342911	3.9560174747724	3.65581168824727	4.36783803826575	1.00035978135603	0.0332423021962454	0.179131942465482
Merged-chr3-58692265-4	chr3	58692146	58692346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045167)	promoter-TSS (NR_045167)	142.0	NM_009174	20439.0	Mm.2847	NM_009174	ENSMUSG00000036432	Siah2	AA415433|Sinh2	siah E3 ubiquitin protein ligase 2	protein-coding	7.73256488206657	7.99356134762663	8.31161841960047	7.84818164856468	7.72592601696747	7.9836001980404	7.81398637625412	7.87631438628047	-0.176526058508672	0.351528986580876	0.658893189148013
Merged-chr5-117417619-4	chr5	117417527	117417727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	3625.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	7.24615573208619	7.61470296427933	7.41939647620385	7.85943942230609	7.51613863946826	7.49249682662797	7.94529750910875	7.65965465406405	0.127160993627714	0.550173780743322	0.798450832678075
Merged-chr13-23430932-4	chr13	23430826	23431026	+	985.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015492)	promoter-TSS (NR_015492)	91.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	4.93458523111207	5.37126262888933	5.17512738675159	4.88732196175033	5.02003134795869	5.18377680677998	5.11826290319401	5.26178617026911	0.0884355245973483	0.781164053972256	0.914785235722602
Merged-chr2-6580320-4	chr2	6580266	6580466	+	907.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 11 of 15)	intron (NM_001110232, intron 11 of 15)	141296.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	3.91256873235498	4.04476542877857	4.1699245213618	4.57571097694086	4.2145350274973	4.09171856787255	4.19716190842693	4.45737468131402	0.0591031638105969	0.894259202847464	0.960481560907683
Merged-chr14-33246675-3	chr14	33246581	33246781	+	903.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	29858.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	3.51288667893392	3.89863396408999	3.79864630141369	3.57742506220973	3.65836777865973	4.11270717502615	3.83248085464481	3.94158263952627	0.548593295522642	0.244671812336684	0.555808536831526
Merged-chr8-125184079-3	chr8	125183960	125184160	+	728.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	129865.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	4.2875135696093	3.95282541973349	4.07930960874834	3.92775957343581	3.72071622127848	4.00540433967022	4.10536490385654	3.88108583620096	-0.35926279381892	0.417125945594892	0.710879846801198
Merged-chr2-137114506-4	chr2	137114446	137114646	+	847.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013822, intron 2 of 25)	CpG	1974.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	4.76311378010404	4.08050931817663	4.69726533168967	4.77364183131562	4.1290418104812	4.37855505283415	4.13172740260484	4.38539267033667	-0.829208607504929	0.0468627960735419	0.222538049774561
Merged-chr17-45953739-3	chr17	45953642	45953842	+	945.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71421.0	NM_001110267	22339.0	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	4.19600278347844	4.19329269129146	4.86322150708654	4.73286770783469	4.30406258848332	3.92715716824159	4.27143591367645	4.14458266633934	-0.861876520020048	0.0490391804489497	0.22892448702357
Merged-chr19-37561695-4	chr19	37561594	37561794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175353, intron 1 of 21)	intron (NM_175353, intron 1 of 21)	11276.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	5.75301256588864	5.39098122358917	5.62891496966313	5.9298372712891	5.87199932656164	5.66647984393698	5.51967854475793	5.59839753282553	-0.0425458682775268	0.880401551327043	0.95517036814656
Merged-chr16-76053751-4	chr16	76053632	76053832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52948.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	6.78930573522788	6.64632179054685	6.96169113102798	7.33167765671321	6.43936462366526	6.47565144619579	6.81090501169978	6.8135614328347	-0.466444175963174	0.0565360906706567	0.249021187985562
Merged-chr10-89599886-1	chr10	89599786	89599986	+	816.0	f1_balb.idr	promoter-TSS (NM_001310710)	promoter-TSS (NM_001310710)	-71.0	NM_001310710	216227.0	Mm.233921	NM_182959	ENSMUSG00000019935	Slc17a8	BC042593|Vglut3	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8	protein-coding	3.70087503708666	3.62056247357674	3.70136611044707	3.52886748642923	4.1977444915185	4.04021971446829	4.0820714896982	4.25921683529559	1.46913887207776	0.000606429676491835	0.00901525855117216
Merged-chr5-141084929-4	chr5	141084810	141085010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84314.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	6.29678021310721	6.0482078894772	5.46700281121362	6.12823806927779	6.33666168596974	6.59183345337586	6.17292629823852	6.25698500016128	0.487969536257826	0.0720301616110848	0.288383108599292
Merged-chr15-89429481-4	chr15	89429377	89429577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_004843, exon 1 of 27)	non-coding (NR_004843, exon 1 of 27)	450.0	NR_037154	12651.0	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	7.82260981788094	7.75713044743799	7.56719127473885	7.76876576731831	7.73606185308127	7.74475602168504	8.11833015861975	7.58023976945692	0.0988869567758451	0.597589815292423	0.825429034783496
Merged-chr3-75277650-4	chr3	75277562	75277762	+	966.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-7584.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	4.99827402553501	4.57434639973164	4.37176944855064	4.97594859892784	4.98651881331552	4.79507940750879	5.0996213484057	5.38990878523892	0.622284627830144	0.0940985687301408	0.335575592411038
Merged-chr12-76191166-4	chr12	76191070	76191270	+	891.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13911.0	NR_104386	13983.0	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	4.23113366640741	4.61111747997102	4.13178977434612	4.40422837669296	4.41948863916026	4.35863104267765	4.391205800129	4.52798335931535	0.141076783731017	0.714332059697708	0.885778225100574
Merged-chr12-100203588-4	chr12	100203473	100203673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313934, intron 2 of 5)	intron (NM_001313934, intron 2 of 5)	3429.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	6.08496219975795	6.55471898532595	6.10677290466208	6.37813532144084	5.87829674861397	6.01042244980587	5.82784782441027	6.06062215902262	-0.560808246548264	0.0235551982859957	0.142534681526727
Merged-chr12-76473868-1	chr12	76473768	76473968	+	714.0	f0_balb.idr	Intergenic	Intergenic	29371.0	NR_028520	100041694.0	Mm.259350	NR_028520	ENSMUSG00000073000	Gm10451	-	predicted gene 10451	ncRNA	3.49266711552501	3.49646311728368	3.54564909982912	3.39317007925662	3.20029103252133	3.71393408278158	3.24803516156405	3.37952123192093	-0.291789368077089	0.581698914449702	0.816420227529328
Merged-chr5-124477342-4	chr5	124477246	124477446	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	B3|SINE|B2	889.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	4.48529471786138	5.17150605194952	5.02467900409775	4.76059102593114	5.00650026677336	5.09418330675243	5.27141326539896	5.2944515555295	0.550261889795903	0.105657705994683	0.357953824607118
Merged-chr11-50276080-4	chr11	50275965	50276165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	B4A|SINE|B4	16271.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	6.60278637838282	6.37754222096108	6.22589627035702	6.9022983844916	6.47644667453999	6.69991507510562	6.64533193515481	6.61468631086665	0.04958565653168	0.838107047293522	0.938557000665591
Merged-chr1-16079243-4	chr1	16079135	16079335	+	793.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305227, intron 3 of 5)	intron (NM_001305227, intron 3 of 5)	14090.0	NM_001243238	75799.0	Mm.78557	NM_001243238	ENSMUSG00000067795	4930444P10Rik	-	RIKEN cDNA 4930444P10 gene	protein-coding	3.99687749457701	3.9379611338827	4.19153948804255	4.27929436155708	4.099187933859	4.31729625811134	4.25914099508211	4.27586300274229	0.284919862120134	0.487339960024824	0.760659847260201
Merged-chr4-3649204-4	chr4	3649109	3649309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7297.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	7.16188572176278	7.21741241820268	7.20737506630195	7.54296362980109	6.66811754122192	6.4040901767132	7.43386240908423	7.25548211662086	-0.396868257477258	0.135744388433125	0.410143043733825
Merged-chr10-25200173-4	chr10	25200079	25200279	+	790.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347460)	promoter-TSS (NM_001347460)	-9.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	4.31490688641611	4.28442392799901	4.47837040385627	4.45311187301372	4.09445574940347	4.35228243829042	4.37935372464528	4.02235301740122	-0.423765043097456	0.2839003366328	0.595969718026818
Merged-chr12-38864211-4	chr12	38864176	38864376	+	980.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347379, intron 11 of 11)	intron (NM_001347379, intron 11 of 11)	80565.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	4.55277647835885	4.49841728852982	4.46958530448051	4.58401423485918	4.35463313722869	4.94508980971726	4.44942197261956	4.59048894818722	0.140538079719926	0.706568253913776	0.882113546590814
Merged-chr11-100712454-4	chr11	100712388	100712588	+	881.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020004)	promoter-TSS (NM_020004)	-21.0	NM_020004	14534.0	Mm.218837	NM_020004	ENSMUSG00000020918	Kat2a	1110051E14Rik|AW212720|Gcn5|Gcn5l2|mmGCN5	K(lysine) acetyltransferase 2A	protein-coding	4.02916806372466	4.03434953957564	3.81793098897036	3.77612311508214	4.39082186411493	4.24947571337846	4.23378775059448	3.97759528745978	0.831841477101448	0.0476199805596026	0.225054285655133
Merged-chr8-35666008-3	chr8	35665915	35666115	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 2 of 2)	intron (NM_001081279, intron 2 of 2)	-76995.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	6.21985538805695	6.29522202978872	6.4166391806882	6.65617387707193	4.28879289575064	4.5657739284707	4.51414789479221	4.3521167235864	-3.88099065778389	1.26824409888945e-26	9.70670394783359e-24
Merged-chr5-103678333-4	chr5	103678221	103678421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22589.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	5.41787942407205	5.38908057467622	5.23140500046114	4.91408624473498	5.77541544412004	5.27012775695892	5.6745573414679	5.872399020895	0.76357392655983	0.0128502434138627	0.0943150624825051
Merged-chr12-108637201-4	chr12	108637097	108637297	+	918.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	1444.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	4.39152004999973	4.44246658503304	4.56520723891957	4.78544516163081	4.47832431164627	4.37385055809338	4.89174121903903	4.67806746053329	0.104166549554776	0.784492880258756	0.916076100794651
Merged-chr5-41525153-4	chr5	41525052	41525252	+	907.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16B_MM|LTR|ERVK	182539.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	4.48371485027068	4.43912333478841	4.58836581857345	4.88272390738523	5.79167978279557	5.69637494483213	5.71762554742293	5.51914121501069	1.92484485174166	1.85650636533274e-08	9.3652917489737e-07
Merged-chr11-6299681-4	chr11	6299613	6299813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010956, intron 2 of 22)	B3|SINE|B2	7134.0	NM_001361902	18293.0	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	7.52943889244817	7.04193152354306	7.2023134062367	7.38581078630039	7.46749422737014	7.3908468936809	7.31571072537777	7.35722079857201	0.109665390511466	0.56770470682568	0.808331754798167
Merged-chr12-111454226-3	chr12	111454150	111454350	+	709.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009396, exon 12 of 12)	3' UTR (NM_009396, exon 12 of 12)	11589.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	3.5743701757694	3.44123222356309	3.67795334648697	3.17601206820927	3.85228012356178	3.63724175536914	3.6122462544698	3.40137496354101	0.56160847056454	0.282352867768306	0.594517682403819
Merged-chr9-54699613-2	chr9	54699513	54699713	+	751.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021422)	promoter-TSS (NM_021422)	54.0	NM_021422	58233.0	Mm.489676	NM_021422	ENSMUSG00000032285	Dnaja4	1110021L12Rik|AV358213|Dj4|Hsj4|mmDjA4	DnaJ heat shock protein family (Hsp40) member A4	protein-coding	2.85542151799934	2.70272069062207	3.03259341925709	2.38849771298021	2.9052971812167	2.96646619402319	2.90600820640868	2.85431273051934	0.668165802640542	0.327625623519377	0.639080960714874
Merged-chr5-121838829-4	chr5	121838748	121838948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1989.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	6.68520452396328	6.92817647811965	7.03339138558671	7.23438771153595	6.89818630027301	7.02797828425045	6.9360072866882	7.13301064595233	-0.00270796851266615	0.98978051698055	0.995922920810836
Merged-chr11-101708641-4	chr11	101708530	101708730	+	955.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24326.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	5.16826136245233	4.81323941096534	5.00284934821141	5.27086521261313	5.23005770580184	4.8633664846363	5.34322583159487	5.16558329534624	0.149794680819778	0.644418570383502	0.850224984568163
Merged-chr10-121506808-4	chr10	121506687	121506887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30537.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	5.86327936777934	5.45897998554185	6.24186227996622	6.70399795764569	5.73094767623857	5.37077459621708	5.90203433947969	5.7638854386575	-0.748401059319141	0.0316308706723437	0.173442242014232
Merged-chr19-41337046-4	chr19	41336925	41337125	+	841.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	48045.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	4.10803647908457	4.11814602267523	4.25174859627824	4.19178248281629	4.17694269625082	4.28432480164053	4.36029155890339	4.63461388347691	0.486518866010863	0.217854264065711	0.524759683990972
Merged-chr7-34198545-4	chr7	34198435	34198635	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-1865.0	NM_001360710	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	4.62903289785768	4.64214133038768	4.54347412511178	4.54575261851772	4.87278824512039	4.95937769285309	4.99714138167269	4.92321444141942	0.724738415801432	0.0258193864286123	0.151758720611247
Merged-chr17-84204297-3	chr17	84204202	84204402	+	757.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 36 of 37)	ORR1D2|LTR|ERVL-MaLR	-16355.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	3.77758686255783	4.02138432658148	3.56884204663946	3.14468074451722	3.48448471020617	3.3668902415283	3.60946795530449	3.95541256145477	-0.13705029655937	0.810612310442181	0.926854276252049
Merged-chr4-102576552-2	chr4	102576452	102576652	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	ID4|SINE|ID	6492.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	3.25169154515687	3.70319552196602	3.06181253479748	2.87896599475709	3.39401224568804	3.24087630068067	3.23979148163048	3.3081004146358	0.131065458286172	0.829535395021917	0.934573663797877
Merged-chr15-27922383-4	chr15	27922270	27922470	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	103478.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	5.36999514967793	5.31104299284587	5.83208489595124	5.68757298507855	5.54137930552856	5.23955979726014	5.73664407651272	5.56684450834992	-0.06408530426171	0.828349972136773	0.934164461367054
Merged-chr13-59556775-2	chr13	59556675	59556875	+	866.833374	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001284219, exon 1 of 25)	5' UTR (NM_001284219, exon 1 of 25)	147.0	NM_001284219	67269.0	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	3.48716181326902	3.20917352968088	3.48762738783463	3.62498564093229	3.58313011146901	3.65741599261298	3.4741624361908	3.48574444438524	0.267718822551359	0.599564459480846	0.82646936617904
Merged-chr16-91456781-4	chr16	91456640	91456840	+	786.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-8364.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	3.83847307893067	3.9488593047491	3.78510465660055	3.73030249552994	4.00444074409145	4.15817433577056	3.97116238641631	3.98604701859052	0.578227246559923	0.174040728395815	0.468303973329516
Merged-chr16-20651671-4	chr16	20651587	20651787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027485)	promoter-TSS (NR_027485)	35.0	NM_134101	21762.0	Mm.243234	NM_134101	ENSMUSG00000006998	Psmd2	9430095H01Rik|AA407121|TEG-190|Tex190	proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	protein-coding	6.54608644877284	6.55257431406674	6.1687430730073	6.64781790737746	6.92025812795561	6.56795854925098	6.70930739010349	6.60630309930137	0.307889673582777	0.174199675685367	0.468536831756677
Merged-chr16-44032582-4	chr16	44032435	44032635	+	905.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359085, intron 2 of 16)	MTE2a|LTR|ERVL-MaLR	-4590.0	NM_001172107	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	3.62613566241841	3.39651411133329	3.6827927126191	4.17558623467198	3.8869236715086	3.74405013256864	3.77275252549216	3.92959715913476	0.17990260042381	0.73059947121244	0.893175201577217
Merged-chr15-83221915-3	chr15	83221830	83222030	+	884.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29801.0	NM_001170954	239559.0	Mm.323805	NM_001004150	ENSMUSG00000047878	A4galt	-	alpha 1,4-galactosyltransferase	protein-coding	3.71326212566818	3.98499495602711	3.66200407677574	3.88877915162486	3.42674689742364	3.48090171850562	3.59408837380074	3.60609284479402	-0.952076985255816	0.0503693067061499	0.232872874139775
Merged-chr4-116175898-4	chr4	116175800	116176000	+	955.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2528.0	NM_001099295	67323.0	Mm.45442	NM_001099295	ENSMUSG00000078593	1700042G07Rik	-	RIKEN cDNA 1700042G07 gene	protein-coding	4.64078858022961	4.81929698125319	4.46882892353256	4.66854817053121	4.84621941439935	5.06656781951854	4.53743781995297	4.63853019675872	0.271428913778212	0.445394300348859	0.731479858046592
Merged-chr12-32735461-4	chr12	32735349	32735549	+	972.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	FordPrefect|DNA|hAT-Tip100	-84886.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	5.13590305840913	4.43564001328365	5.07550762959534	5.325350440997	4.93147814162014	4.57152931847795	5.11118286188769	4.7923632453614	-0.340801167208614	0.374659538536486	0.677891254741963
Merged-chr5-135394574-4	chr5	135394479	135394679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148932)	promoter-TSS (NM_148932)	-33.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	7.15429391274154	7.36898021245823	6.47230701854851	6.62597750667104	6.95818549066315	7.16824375806686	7.00505155018714	6.98658446332196	0.105312507327844	0.676358792631436	0.867097153109958
Merged-chr7-122258160-3	chr7	122258072	122258272	+	878.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30953.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	3.42584458638529	3.20122703579062	3.31490997344596	3.4177911393843	3.14107172662094	3.42830560013035	3.2438686724534	3.57482419894305	0.021402350252929	0.968298409512862	0.988694268692349
Merged-chr10-8875413-4	chr10	8875302	8875502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	10668.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	8.18648907471665	8.26416749754257	8.27062553765615	8.17952310880831	7.66758353850775	7.6751098705042	7.49876834773245	7.19087278882711	-0.906620106874439	4.49165524909473e-07	1.68003956371683e-05
Merged-chr4-152448796-4	chr4	152448697	152448897	+	938.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252655)	promoter-TSS (NM_001252655)	58.0	NM_001252655	16498.0	Mm.388924	NM_010598	ENSMUSG00000028931	Kcnab2	F5|I2rf5|Kcnb3|kv-beta-2	potassium voltage-gated channel, shaker-related subfamily, beta member 2	protein-coding	5.88144608384474	5.33363773622132	5.71539982222529	5.62516037712036	4.85267216501291	5.03555273051074	5.2674070926374	5.22602648802033	-0.994109008753771	0.0013130536047127	0.0167795049425216
Merged-chr15-76640023-4	chr15	76639923	76640123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183091)	promoter-TSS (NM_183091)	-94.0	NM_183091	72749.0	Mm.358749	NM_183091	ENSMUSG00000059323	Tonsl	2810439M11Rik|Nfkbil2	tonsoku-like, DNA repair protein	protein-coding	6.89864031561751	6.9356004584778	6.5559484704299	6.77230217494378	7.2794806876004	7.13922214799786	6.79760300383636	6.61754469147884	0.273324828442536	0.2399077139982	0.550399004463438
Merged-chr13-34255414-4	chr13	34255317	34255517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	89765.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	6.11984863168575	5.81216728941269	6.08165956005821	5.99719887621595	5.98989985537168	5.86416901402286	6.08956872299504	5.56876707190909	-0.169344438975632	0.510432850805856	0.774754235792943
Merged-chr7-43564776-4	chr7	43564663	43564863	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001008549, exon 2 of 5)	5' UTR (NM_001008549, exon 2 of 5)	2393.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	5.80981211873068	5.8361973996208	5.97986971378577	5.29435851009018	5.65422290982979	5.32377827597596	5.44846112389893	5.76063050394136	-0.295565342958169	0.333252443821687	0.644073303613562
Merged-chr11-94133547-4	chr11	94133520	94133720	+	959.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-77834.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	4.48285024672973	4.35224462240648	4.19166225644433	4.29918281438291	3.92307922857637	4.31828900415296	3.97350145777983	4.40395241018281	-0.425187002165476	0.3066317656652	0.619051127874117
Merged-chr12-110777252-3	chr12	110777162	110777362	+	641.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347428, intron 1 of 2)	B3|SINE|B2	39330.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	3.37795182433572	3.4245716037337	3.26960304329328	3.46396947837082	3.37769703056645	3.05563798497604	3.14056431749591	3.14927101428785	-0.730130916871927	0.190384624483389	0.489544881684295
Merged-chr10-69186451-4	chr10	69186361	69186561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22091.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	5.24193709488665	5.24450280294259	5.50031458421505	5.16370253719177	5.25061652421196	5.35312882363677	5.39330002033414	5.44384684143551	0.136822870680107	0.634087162062497	0.84499447903032
Merged-chr4-151860774-2	chr4	151860683	151860883	+	946.666626	f0_balb.idr|f0_c57.idr	intron (NM_001081557, intron 1 of 23)	intron (NM_001081557, intron 1 of 23)	985.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	4.86062313166753	4.79515011851876	4.89574027213721	4.80322307821812	4.63742734619393	4.92520956700503	4.57055175201199	4.67140646780489	-0.279272411134591	0.405598984832094	0.702341680428793
Merged-chr12-73773099-4	chr12	73772996	73773196	+	934.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 12 of 13)	intron (NM_008856, intron 12 of 13)	-128228.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	4.17957527680875	4.32912808205573	3.75494797290499	4.10276042150381	4.36907888334157	3.93833665128614	4.60940505877518	3.92848977584484	0.347494841316872	0.453308489729957	0.737415719616292
Merged-chr4-138283014-4	chr4	138282924	138283124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190978, intron 6 of 11)	intron (NM_001190978, intron 6 of 11)	20773.0	NM_010623	16559.0	Mm.271936	NM_010623	ENSMUSG00000028758	Kif17	5930435E01Rik|AW492270|Kif17b|mKIAA1405	kinesin family member 17	protein-coding	6.45395309534918	6.77796347090298	5.63646462918768	5.94437025327723	6.47576351972624	6.33979016727101	6.37228961936203	6.13765150877296	0.0947018158649285	0.756159220247365	0.904159100355911
Merged-chr12-3424337-4	chr12	3424246	3424446	+	950.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	intron (NR_030694, intron 1 of 2)	2401.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	4.30203834104159	4.34837350640988	4.20958120266718	4.44813134999596	4.49785401233927	3.87634172111937	4.56167115252353	4.54412178842472	0.157877839629128	0.703925473522296	0.880925455128412
Merged-chr13-91908389-4	chr13	91908299	91908499	+	777.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009027, intron 6 of 14)	intron (NM_009027, intron 6 of 14)	-31514.0	NM_198415	76722.0	Mm.316438	NM_198415	ENSMUSG00000021622	Ckmt2	2300008A19Rik|ScCKmit	creatine kinase, mitochondrial 2	protein-coding	4.29542763439689	4.36510857134884	4.49623132467737	4.47290923371983	4.15346861966547	3.95384136273707	4.14119850460386	4.24933750683604	-0.699806174216878	0.0772553557452435	0.300604546361487
Merged-chr7-88277388-4	chr7	88277307	88277507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311790)	promoter-TSS (NM_001311790)	-678.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.79618494366993	7.35540967251423	7.00622630578881	7.27240608510085	7.35936304016435	7.03437529981315	7.17121296100674	7.21314751114718	0.0927513878599829	0.659856497249793	0.858583021675618
Merged-chr5-123863208-4	chr5	123863090	123863290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030701)	TTS (NM_030701)	2326.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	6.8306853285504	7.29576834343654	6.64071881092823	6.70449651252898	6.80738626979239	6.57493628241745	6.74161822636309	6.66733328695428	-0.266095218646221	0.252853873363164	0.564090950044401
Merged-chr1-60409571-4	chr1	60409474	60409674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198571)	promoter-TSS (NM_001198571)	-45.0	NM_001198571	329165.0	Mm.212066	NM_198127	ENSMUSG00000026782	Abi2	8430425M24Rik|AI839867|C130078H13	abl-interactor 2	protein-coding	6.08936998863338	6.26329129458403	6.52949266531564	6.09496024018362	6.11759973992317	6.44932351767497	6.40032577821076	6.46155453025429	0.16445874166898	0.493718771752667	0.764438087754564
Merged-chr3-8734045-4	chr3	8733978	8734178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67040.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	4.84855874958542	4.78886973408464	4.8131723492059	5.07588291203656	4.86239551102763	4.40519691673987	4.8262178950009	4.88125720037893	-0.275569429550021	0.429644785405461	0.720569406479001
Merged-chr8-22858966-2	chr8	22858866	22859066	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081149)	promoter-TSS (NM_001081149)	-573.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	6.25677455494601	6.49963892992465	6.57083991585304	6.49230589550172	6.24908558165601	6.39482640730548	6.44183486990248	6.47030570368098	-0.115327584619118	0.596965185120318	0.825011356626265
Merged-chr2-11299529-4	chr2	11299389	11299589	+	939.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 17 of 17)	intron (NM_008859, intron 17 of 17)	-40000.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	4.66284585691218	4.42528016875046	4.54739049683911	4.52566213092847	4.37306299302526	4.40645336264881	4.87466759988727	4.5444571734809	0.0473021936145333	0.898612806192662	0.962274122641605
Merged-chr3-108148065-4	chr3	108147971	108148171	+	965.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001305461)	TTS (NM_001305461)	-1919.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	4.87690557727201	5.03756546287653	4.54244062014785	4.58390579602484	5.01889090482714	5.12329672733391	4.95972784238889	5.33361417926516	0.683234151337036	0.0434820820945457	0.212161442377822
Merged-chr5-135191841-4	chr5	135191751	135191951	+	864.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011714, intron 1 of 18)	B3|SINE|B2	4528.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	3.87763799526617	3.98681766483036	3.70884434267239	3.88406375303628	4.2529621477141	3.76699234653318	3.96311220311903	4.45979758448438	0.72186862793077	0.112076319157959	0.369995840700542
Merged-chr11-19924348-4	chr11	19924242	19924442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033523)	promoter-TSS (NM_033523)	-100.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	6.8610640229125	7.45613765833082	6.66935526058867	6.7206345140395	6.83428671355208	7.18159702576078	6.867858452145	6.84357062425044	-0.0420293089440834	0.865421894678183	0.949633327289661
Merged-chr5-108248727-4	chr5	108248627	108248827	+	912.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-20170.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	4.75344959493276	4.57079137575841	5.0017531849075	4.39857682990335	4.424117476093	3.97625972895	4.54860510330948	4.44243056577136	-0.722252132927394	0.0808941588644107	0.308560375187203
Merged-chr3-94583135-4	chr3	94583051	94583251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029721)	promoter-TSS (NM_029721)	-435.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	6.80942945947957	7.06471019720667	6.79588781007493	7.15028982836789	7.17726840275481	7.22666454167789	6.96534970073574	7.14961594556485	0.212788817321226	0.290220117457915	0.602406731765695
Merged-chr7-113207280-4	chr7	113207167	113207367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007489)	promoter-TSS (NM_007489)	-198.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	9.06163812707187	9.35424382350859	9.20748689852186	9.4199158639019	9.29411150459693	9.47547653937773	9.29374222336151	8.98582305477469	0.00252840023052588	0.987923715725975	0.995370064932717
Merged-chr11-16669931-4	chr11	16669843	16670043	+	909.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82260.0	NM_207655	13649.0	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	4.72238490718879	4.72311716201111	5.04202407753569	5.0552773987201	4.70019639386128	4.6375558527319	5.16338938534287	4.83533853885545	-0.11481125336831	0.743518880779097	0.898960594151983
Merged-chr17-47522659-1	chr17	47522559	47522759	+	931.0	f0_balb.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	17608.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	3.43965867435947	3.36574376489371	3.64297540746789	3.67860575491527	3.42959592654388	3.24122057222851	3.25283979112604	3.43826479312322	-0.680293643194423	0.196772853819468	0.4979362662321
Merged-chr19-5631225-3	chr19	5631138	5631338	+	647.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4-int|LTR|ERVK	-6252.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	3.29371802062474	3.23602120760972	3.34219137789708	3.38468624628235	2.5202940258844	2.62536050982364	2.59591443314036	2.68021394555496	-4.7799008097342	4.67762416970984e-06	0.000139776914683366
Merged-chr10-118862924-4	chr10	118862819	118863019	+	791.270813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	5984.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	3.98998473007274	3.61171143710156	3.99062539369279	3.68466598268458	3.67787444516832	3.92806585164883	3.25533294758391	3.70179527747484	-0.489391260176069	0.346377097943876	0.654667431081974
Merged-chr2-24409409-4	chr2	24409287	24409487	+	934.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177611)	TTS (NM_177611)	22771.0	NM_001355232	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	3.86843871828365	4.18847209624407	4.02880388038512	4.28006643024611	4.23908788992309	4.1519438114077	4.31887980003827	4.02647968337883	0.189043101629723	0.652717768538892	0.854764223296605
Merged-chr18-79284187-4	chr18	79284060	79284260	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-174769.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	5.09154999418554	5.28125430509749	5.18492284192218	5.04194969213324	4.905676298176	4.85994133105891	4.93371112114409	4.84279882660751	-0.507887394527099	0.103697051469849	0.353905467327021
Merged-chr17-4840330-3	chr17	4840220	4840420	+	703.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-154754.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	3.50156392995531	3.42536013810136	3.44577289764153	3.49221612642603	3.62201848765227	3.43809303670612	3.68905399196174	3.55395043956312	0.372372868877326	0.441585772804558	0.72855020254378
Merged-chr1-152540004-4	chr1	152539903	152540103	+	899.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001346119, exon 10 of 18)	exon (NM_001346119, exon 10 of 18)	85214.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.17180610382612	4.29015576151848	4.52009984827181	4.59440121767612	4.40985033892246	4.34779461275299	4.20344948897562	4.39776674881592	-0.173813793929546	0.656500246001928	0.856674629405306
Merged-chr10-49075626-4	chr10	49075516	49075716	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	712321.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	6.94123572246609	7.08779437331585	7.08729945041245	7.37582304082655	5.80606367649838	6.03370778737396	5.9245827570331	5.53381390264486	-1.93796190486104	5.31942945054294e-16	1.02057053601131e-13
Merged-chr13-30949412-4	chr13	30949302	30949502	+	930.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360093, intron 1 of 28)	intron (NM_001360093, intron 1 of 28)	896.0	NM_001360093	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	4.45869994256404	4.07024204195426	4.4594113377484	4.47549497416614	4.36218422034687	4.15408080499378	4.43883411698729	4.74566859622581	0.144818677326363	0.718732409134906	0.887667216205288
Merged-chr1-153931415-1	chr1	153931315	153931515	+	623.0	f0_balb.idr	Intergenic	Lx7|LINE|L1	31486.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	3.10634442831525	2.89420675655887	2.99090217043917	3.22127941760508	2.8627859953542	2.82750327877394	2.91918953483379	3.15913539853017	-0.503333713629609	0.410437842489746	0.705836076119295
Merged-chr1-106797548-4	chr1	106797493	106797693	+	904.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009190)	promoter-TSS (NM_009190)	-868.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	3.61557872236958	3.87633950135885	3.67709751745605	4.14688311111393	4.18054761168199	4.01813712272696	4.18929051067693	3.7894667084595	0.517278827907988	0.281613133872362	0.593713087373404
Merged-chr15-59819330-4	chr15	59819193	59819393	+	989.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24334.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	4.97980032325057	5.57940245533958	5.56306894661097	5.7949453165485	5.9678058045453	5.50018039938869	6.11672211173393	5.63931944297686	0.506286889256182	0.115092640963583	0.375422103710937
Merged-chr7-24662733-4	chr7	24662624	24662824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030681, exon 2 of 2)	non-coding (NR_030681, exon 2 of 2)	1430.0	NR_030681	100043706.0	Mm.483825	NR_030681	ENSMUSG00000108470	Gm4598	-	predicted gene 4598	ncRNA	5.50027811929895	5.26905821061456	4.94491717231846	5.3983708259325	5.77760690899366	5.62037757925459	5.33439479284767	5.20002520998148	0.372006635292784	0.237153428522176	0.547299026968193
Merged-chr9-85357615-4	chr9	85357522	85357722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30472.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	6.15146964483335	5.82562368810118	5.88955429963602	6.02014292108579	6.44148670238428	6.11314020936834	6.44747701339911	6.12814713903262	0.497859687876478	0.0393799201550141	0.19984222686356
Merged-chr19-61229144-4	chr19	61229031	61229231	+	917.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009970)	promoter-TSS (NM_009970)	-713.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	4.03561540759367	3.99497896415607	3.83457390365539	3.99616957027889	4.07067730902896	3.83968244579291	4.10782537646537	4.12369413162973	0.196108016979175	0.641418991782184	0.848711053575939
Merged-chr4-137879788-4	chr4	137879645	137879845	+	966.9166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	17508.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	3.26513788422185	3.23813709946459	3.34771480685682	2.92471309466734	4.51350824272709	4.78166184428292	4.48188433191142	4.84189563888412	4.56721710489167	4.79850886055248e-17	1.07745445484311e-14
Merged-chr6-128437893-4	chr6	128437789	128437989	+	996.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028592)	promoter-TSS (NR_028592)	767.0	NM_010219	14228.0	Mm.12758	NM_010219	ENSMUSG00000030357	Fkbp4	AL022792|AW208983|FKBP-4|FKBP-52|FKBP52|FKPB52|p59	FK506 binding protein 4	protein-coding	4.95410348865749	4.66948359098809	4.92064838220096	4.98938869358161	4.68925465316852	4.78532451414599	4.86201584522655	5.16817562450574	-0.0225765201516994	0.946929742348873	0.98101762641852
Merged-chr3-75281026-2	chr3	75280926	75281126	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10948.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	3.20554661816458	2.93196068682568	2.88866772329302	2.61526254418414	2.5853417626025	2.73119875055293	2.54224136343899	2.82573304347066	-1.1912056169893	0.0884910825269571	0.324591948631089
Merged-chr11-69575433-3	chr11	69575343	69575543	+	786.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144824, intron 3 of 9)	B3|SINE|B2	3881.0	NM_144824	216853.0	Mm.31586	NM_144824	ENSMUSG00000041346	Wrap53	BC021790|Wdr79	WD repeat containing, antisense to Trp53	protein-coding	3.25283514265959	2.9838664608061	3.0305197166404	2.9923987431352	3.12742125430454	3.076501269194	2.89398640116319	3.02902299977194	-0.108111798247938	0.852184960804251	0.944338164574063
Merged-chr1-95339820-4	chr1	95339724	95339924	+	985.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	26196.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	5.28937222859819	5.01727400673981	5.46174955675408	5.79991328523185	4.75606024386057	4.95545395341551	5.32316624029391	5.74294631310369	-0.332524591254844	0.381407289798064	0.683644065385822
Merged-chr12-28675375-4	chr12	28675297	28675497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134052, intron 1 of 3)	CpG	190.0	NM_134052	104923.0	Mm.291504	NM_134052	ENSMUSG00000020629	Adi1	AL024210|Fe-ARD|MTCBP-1|Ni-ARD	acireductone dioxygenase 1	protein-coding	5.47093407065108	5.60308905587838	6.09450591847667	6.02279611774574	6.18230512352899	5.82927768929734	6.04352773443148	6.12883839099762	0.351535089142458	0.202757066257781	0.505320783254999
Merged-chr16-93191471-2	chr16	93191371	93191571	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161718.0	NR_040486	69857.0	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	3.5475843687546	3.58016562119059	3.49567970551767	3.13889952053245	3.61751939946499	3.43834246346284	3.18636762267225	3.49369788185911	0.0173817995838988	0.974568515051597	0.990926408960312
Merged-chr11-73138336-4	chr11	73138246	73138446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010353)	promoter-TSS (NM_010353)	-52.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	6.98032807388085	7.12819846086182	6.7486101645616	6.71498602548615	6.99408492331321	7.1199176325493	7.05361352601152	6.7286854074614	0.117194335720596	0.581140581392001	0.816119274793356
Merged-chr5-72204733-4	chr5	72204648	72204848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	1405.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	5.06375073859044	6.18619516063334	5.54278655719398	5.35699374477041	5.61385475778805	5.42274577037212	5.21853374463518	5.36842547896024	-0.325031985855919	0.356128765615744	0.662704502355483
Merged-chr15-89591900-4	chr15	89591776	89591976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026817)	promoter-TSS (NM_026817)	47.0	NM_026817	68708.0	Mm.23258	NM_026817	ENSMUSG00000022621	Rabl2	1110031N17Rik|AW549303|Rabl2a	RAB, member RAS oncogene family-like 2	protein-coding	5.65386427067166	5.25893773954174	6.11505819362606	5.47068573698117	5.65243678846656	5.57160878136521	6.02756745246801	6.11064670547653	0.336906207839675	0.283552704928641	0.595670507139694
Merged-chr6-97818307-4	chr6	97818198	97818398	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	11240.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	4.72944216110242	5.24816452052663	4.68493379136447	4.57288318568157	5.48217367034902	5.47228882541356	5.32815872500143	5.48180683004289	1.15322167555665	0.000441062222136958	0.00696105718613893
Merged-chr11-88205113-3	chr11	88204957	88205157	+	713.633362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291271, intron 1 of 4)	intron (NM_001291271, intron 1 of 4)	669.0	NM_001291271	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	3.38390387179559	3.41165453586083	3.54652010239669	3.46649431071314	3.24249466406123	3.37555037499534	3.42743953410811	3.64120197743352	-0.100919804265378	0.844176182322339	0.94088019607581
Merged-chr16-50397475-4	chr16	50397402	50397602	+	912.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	34887.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	4.24097514417164	4.132920396692	3.62699324722369	4.32125863312529	4.02860092896818	3.87120114213453	4.09508725500423	4.06483249774967	-0.260584025340684	0.570101016443439	0.80984538785845
Merged-chr10-127041294-6	chr10	127041141	127041341	+	883.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010792)	promoter-TSS (NM_010792)	153.0	NM_001205036	100504608.0	Mm.486142	NM_001205036	ENSMUSG00000080115	Mettl21b	Fam119b|eef1akmt3	methyltransferase like 21B	protein-coding	3.96214372475391	3.95321237383254	3.76372975504187	3.28146401528042	3.78723896236118	3.9899266576845	3.98970700344918	3.81417830255572	0.397009544743297	0.428680642813629	0.71961368508163
Merged-chr12-91869506-3	chr12	91869386	91869586	+	870.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20329.0	NM_011344	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	3.41498293795242	3.33480872649805	3.30478960117755	3.35544002886741	3.2666670670583	3.22886152694426	3.54945418614869	3.18229878461384	-0.137656781826205	0.794744563751996	0.92060153793945
Merged-chr7-19360088-4	chr7	19359984	19360184	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145822)	promoter-TSS (NM_145822)	-601.0	NM_145822	70333.0	Mm.171370	NM_145822	ENSMUSG00000047649	Cd3eap	1190028F09|2610103M17Rik|ASE-1|Ase1|CAST|PAF49	CD3E antigen, epsilon polypeptide associated protein	protein-coding	4.90369543177727	4.93159588777731	4.94062366731326	4.92266727179603	5.17451840634928	4.88493426556678	4.84435592204688	5.27805508032722	0.27514572572184	0.388070892889685	0.688846544177653
Merged-chr6-136659456-4	chr6	136659354	136659554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	2439.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	6.92888448767886	7.11123615478861	6.67074751192619	6.95971459420738	7.09892420672725	6.86412757398443	6.78673845573571	7.03715106551116	0.0372206653134297	0.856923097814548	0.946159157665131
Merged-chr5-100569521-4	chr5	100569419	100569619	+	817.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139198, intron 1 of 4)	intron (NM_139198, intron 1 of 4)	2686.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	4.25487952980714	3.91740378923727	3.99019596670062	3.56809172228109	4.22381179276035	4.06352052223161	3.92360781098333	4.08239366271497	0.380576782157207	0.408668582757649	0.704461422360426
Merged-chr13-67360599-4	chr13	67360513	67360713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038651)	promoter-TSS (NM_001038651)	-41.0	NM_001038651	629016.0	Mm.440800	NM_001038651	ENSMUSG00000098905	Zfp953	E130120F12Rik	zinc finger protein 953	protein-coding	6.84387975285105	6.84203778067307	6.64797690454543	7.09358780313902	7.08213298850331	7.15459539980887	7.17195003175097	6.88161947587201	0.269672387354704	0.193285601635987	0.493524757598945
Merged-chr12-76538083-4	chr12	76537982	76538182	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	4522.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	5.0264293170241	4.70712180457583	5.14976729931765	5.02476054331787	4.86526848159431	4.3314865430015	5.00258416234413	5.02382994375812	-0.296040320134338	0.413537576911279	0.708462289086549
Merged-chr18-44757895-4	chr18	44757803	44758003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085373, intron 2 of 18)	MTD|LTR|ERVL-MaLR	54279.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	6.8992874991194	6.66159040146583	6.70077947802265	7.46255312792303	6.75580473346354	6.90854118865341	6.75574112060945	6.86896128031028	-0.240303352765841	0.336150375150906	0.646244323954596
Merged-chr10-8124297-3	chr10	8124194	8124394	+	793.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168171.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	3.82452555084876	4.2492222742505	4.18311868354784	4.11325133671708	3.2876617538571	3.59100602986206	3.85901371811404	3.53622097760575	-1.59816625994989	0.00169883466449993	0.0205788551028659
Merged-chr10-89407065-5	chr10	89406964	89407164	+	702.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36903.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	3.06567903439685	3.01847842619586	3.33814656700425	3.35415428753372	2.93217419859921	3.04630777158404	2.99404511772046	3.00253954812278	-0.898596886461036	0.128119846555255	0.398335376322348
Merged-chr9-58204292-4	chr9	58204181	58204381	+	742.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161541)	promoter-TSS (NM_001161541)	38.0	NM_001161541	320563.0	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	3.98931321303868	4.12617421346089	3.61031752336456	3.99256327955202	3.80170927702884	4.20482517666789	3.82495116979773	3.88995227054335	-0.0357194444539491	0.938085346399125	0.977479276803853
Merged-chr2-11192499-4	chr2	11192410	11192610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	20128.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	5.8445971014916	6.11456506764831	5.91867699711848	5.77348511203812	6.40015556165577	6.40592488518043	6.06393442193027	6.13127667933001	0.546110906034631	0.0253210874245684	0.149844502975836
Merged-chr10-37339797-4	chr10	37339698	37339898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-200872.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	6.72917227790761	7.18249166053741	6.38627140681691	6.44798403486031	6.95064394309744	6.84811467691233	6.47829347439752	6.0629469184539	-0.127951721615622	0.661441425392748	0.859388493319773
Merged-chr17-29171259-4	chr17	29171144	29171344	+	934.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360239, intron 13 of 21)	intron (NM_001360239, intron 13 of 21)	36188.0	NM_001002786	442827.0	Mm.440341	NM_001002786	ENSMUSG00000064147	Rab44	9830134C10Rik	RAB44, member RAS oncogene family	protein-coding	5.35620046018733	5.97790768666132	4.87862514350867	4.82847390291191	4.32297395639312	4.31768251165547	4.384390440146	4.29451218470664	-2.1194113752896	1.22382641157916e-06	4.21231818906155e-05
Merged-chr15-6389648-3	chr15	6389577	6389777	+	939.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	2929.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	3.3656600519578	3.19137894035957	3.20376204521743	3.3871815332484	3.07567707794928	3.19201485131368	3.00872174022351	3.14315045827117	-0.746115232057331	0.181193522323948	0.477681655017768
Merged-chr3-121603009-4	chr3	121602912	121603112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	40473.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	5.41833945143674	5.39971450520774	5.56145967922801	5.64642753650652	5.59391389342477	5.73559432980402	5.63606777079924	5.61019696956271	0.202460730982503	0.446724493245829	0.732386500100067
Merged-chr9-110333302-4	chr9	110333203	110333403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001103162)	promoter-TSS (NM_001103162)	15.0	NM_001103162	235623.0	Mm.288741	NM_001001144	ENSMUSG00000032485	Scap	9530044G19|mKIAA0199	SREBF chaperone	protein-coding	6.83642890993412	7.00042051775582	6.59009541524204	6.79560111823831	7.24343929853361	7.04222222692493	6.92287935226384	7.08612844909693	0.373934577651865	0.0651032143827637	0.271503994924383
Merged-chr9-42094891-4	chr9	42094796	42094996	+	995.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011436, intron 3 of 47)	intron (NM_011436, intron 3 of 47)	-17683.0	NM_001357261	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	5.63952492106715	5.64693958028302	5.58507493679824	5.36044575013259	6.11211093124716	6.52106053985376	6.02246920076449	5.22551841691341	0.795094215885092	0.0155819509212996	0.107737142898115
Merged-chr18-80706804-4	chr18	80706702	80706902	+	922.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	1371.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	4.72023346371698	4.26435093230272	4.53287123473305	4.56715328325596	4.33685278023015	4.62261484212731	4.62702179481456	4.48877860283103	-0.0312087227569825	0.933177306592247	0.975927880958692
Merged-chr7-19696585-3	chr7	19696469	19696669	+	959.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009696, exon 4 of 4)	exon (NM_009696, exon 4 of 4)	1829.0	NM_001305819	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	4.08659144192823	3.56270545808613	3.99920820522336	4.26638913153372	3.58365301134223	3.92339925973135	3.61943126332228	3.95036739964165	-0.672650981735388	0.175808940403322	0.470658653309832
Merged-chr15-37007466-4	chr15	37007383	37007583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026521)	promoter-TSS (NM_026521)	-81.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	8.88265158768335	9.01407766481215	8.98785350474436	9.0090393426876	9.03116040687288	8.99416119275418	9.16849397288138	8.80707947070764	0.0391821331009315	0.792436351957412	0.919610988558604
Merged-chr14-63123831-4	chr14	63123713	63123913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	1351.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	7.31940448365923	7.46676102531723	7.7448525034077	7.36861884787914	7.64091551598481	7.57104984654442	7.49100097032607	7.66063030165644	0.152042483413183	0.40709537614441	0.703504376862341
Merged-chr19-16142668-4	chr19	16142575	16142775	+	970.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	9844.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	4.63192930258873	4.63038979860004	4.32538147479234	4.78747697373487	4.69881160864035	4.64079635153758	4.64925069770513	4.62966674088296	0.0772498553620617	0.828988815662481	0.934333879868872
Merged-chr16-91456067-4	chr16	91455955	91456155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9049.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	6.02571171130594	5.83665311705944	5.87083184894476	5.88984326744831	6.25885570792782	5.72871760119358	5.79295789422446	6.25138487368167	0.218068848638693	0.405601618492411	0.702341680428793
Merged-chr5-123393975-4	chr5	123393872	123394072	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177582)	promoter-TSS (NM_177582)	-826.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	4.39889072465042	5.00204637857965	4.49297556467658	4.50240731869176	5.25540673389319	4.98316881763168	4.33155453192205	4.4443232809476	0.41078450435093	0.338178390105922	0.647818742407743
Merged-chr5-73257315-4	chr5	73257251	73257451	+	919.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028194)	promoter-TSS (NM_028194)	-733.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	4.08585876018049	4.18617853487234	3.88295706727558	4.02328858751003	4.16182780244026	3.94867794261281	4.56227044327544	3.76618759253369	0.253413878463164	0.578336376418492	0.814656447271811
Merged-chr6-83632982-4	chr6	83632854	83633054	+	949.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	23162.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	5.06333842032872	4.09721469503158	5.33111111223863	5.32983509149409	4.21316741048414	4.50407771474231	4.49360540416695	4.72155904420102	-1.14684484774521	0.011372864064043	0.0864752739464364
Merged-chr9-84569741-3	chr9	84569640	84569840	+	906.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-204658.0	NR_040739	75253.0	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA	2.84558180788882	2.6938174517605	3.00134534203491	2.60449878162299	3.33691945258526	3.19462549744395	4.11061491168311	3.81221520220157	3.47727194421901	1.72993539603908e-07	7.06860341875235e-06
Merged-chr5-124532143-3	chr5	124532036	124532236	+	884.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021430)	promoter-TSS (NM_021430)	-745.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	3.98036417555291	3.73497806685328	3.6303881077959	3.69462833813863	3.71171593243547	3.74811072554927	3.87330536759005	3.88783277994727	0.128698024858184	0.777201991924835	0.913069887376198
Merged-chr18-77065792-4	chr18	77065702	77065902	+	980.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164168, exon 1 of 14)	5' UTR (NM_001164168, exon 1 of 14)	122.0	NM_001164170	17344.0	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	4.39213745615898	4.60575867396243	5.09132408437168	4.46864221617162	4.69424128920138	4.52347278301319	4.37349106887534	4.47985506725827	-0.286201808112212	0.46658864713127	0.746420287776482
Merged-chr11-54988151-3	chr11	54988060	54988260	+	729.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 19 of 24)	B3A|SINE|B2	-25220.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	3.24370303428465	3.65301637682806	3.04533227007603	2.99969116772162	3.46880690032632	3.41884232342001	3.50532834982587	3.30258212635848	0.586589650132846	0.306249128787546	0.618713292971411
Merged-chr19-3931922-4	chr19	3931802	3932002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2186.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	7.91703520991843	8.12307231827956	8.03891524513609	7.86810345914059	7.69167574886483	7.78550740631456	7.762418477868	7.63898475939924	-0.348472647766732	0.0356368206024544	0.187437615729114
Merged-chr8-116975940-4	chr8	116975835	116976035	+	982.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027103, intron 1 of 2)	intron (NM_027103, intron 1 of 2)	2718.0	NM_001357254	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	5.5471577838797	5.31134962317577	5.36034105381317	5.59746149686508	5.13702213840446	5.05476645363223	5.08019017200906	5.44046637996329	-0.509447845668581	0.0869765095968515	0.321652322622117
Merged-chr16-52091079-4	chr16	52090998	52091198	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	59549.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	4.85052413905046	4.94192227768705	5.40952914303066	5.2065236490714	5.34638188431541	5.14617581170882	5.21320561281786	5.37891064670113	0.282357519203885	0.36683689492593	0.671218820696969
Merged-chr5-100664239-6	chr5	100664145	100664345	+	844.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027978, intron 2 of 6)	intron (NM_027978, intron 2 of 6)	10011.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	3.26925086898864	3.40240785739538	3.54224284531988	3.25999101858684	3.28871268439984	3.38210186589289	3.42613858860821	3.32723123366969	-0.0421280170635957	0.935254232756352	0.976536028067543
Merged-chr3-27302543-4	chr3	27302442	27302642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14535.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	6.19440838934185	5.91864101754488	5.68640182894622	6.08363456088092	6.0564316115898	5.91661217634493	5.92517556679468	5.73571396826194	-0.112677058461819	0.661133432673556	0.859233242450522
Merged-chr1-45907561-1	chr1	45907461	45907661	+	1000.0	f0_balb.idr	TTS (NM_016917)	TTS (NM_016917)	18033.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	3.72406473290388	3.83872654741519	3.61439369776288	3.84172206607228	3.77747108127045	3.61008012952485	3.54293309672435	4.12534530657877	0.0641145092596556	0.894487356290382	0.960584583257403
Merged-chr6-87394049-4	chr6	87393959	87394159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-5124.0	NM_026860	68888.0	Mm.46387	NM_026860	ENSMUSG00000030048	Gkn3	1190003M12Rik	gastrokine 3	protein-coding	5.58967956617332	5.71224460504178	5.1740522079157	5.7682997510393	5.46170351299345	5.24424681562192	5.28144280148272	5.48105086473633	-0.381818436187467	0.198411962905753	0.499938585708116
Merged-chr16-92402722-3	chr16	92402612	92402812	+	655.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-2634.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	2.91783631823589	2.75097973192107	2.80209862296973	2.20506902990595	2.65915208822619	2.7839980620382	2.72959150513291	2.604814877302	-0.026008278300603	0.972672803324706	0.990158712105621
Merged-chr7-127750719-4	chr7	127750619	127750819	+	915.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172748, intron 5 of 10)	intron (NM_172748, intron 5 of 10)	3944.0	NM_172748	233902.0	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	4.43755508309699	4.49175650353003	4.25851454410339	4.29328958820842	4.64940350943086	4.33659480157288	4.71252107513268	4.25596951461667	0.325603327485291	0.394493086702034	0.693649450813075
Merged-chr5-74632606-3	chr5	74632530	74632730	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159577, intron 2 of 10)	Kanga1c|DNA|TcMar-Tc2	45242.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	5.41108346705026	5.58150323196733	5.1737545413001	5.34950550824321	4.59020889450356	4.24159787639173	4.15356003617035	4.44673774595679	-2.08872370335781	3.60852934460413e-08	1.71234340146385e-06
Merged-chr6-71438228-4	chr6	71438105	71438305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355745, intron 1 of 9)	intron (NM_001355745, intron 1 of 9)	2432.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	6.27667854309335	6.38444080250816	6.71507080038145	6.5486694172797	6.03373442635308	5.75555981910389	6.20782189046594	6.15588202833676	-0.669289192139046	0.00584617424271173	0.0532673881748564
Merged-chr7-127761206-3	chr7	127761123	127761323	+	891.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172748, intron 7 of 10)	intron (NM_172748, intron 7 of 10)	-8592.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	3.51647328149383	3.43624077419052	3.45849389498096	2.94508017638398	3.74263822680028	3.89853841781954	3.89014818710436	3.45662907608885	1.33665061193718	0.0141183773433022	0.100578212195073
Merged-chr19-47937078-4	chr19	47936959	47937159	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163267)	promoter-TSS (NM_001163267)	-653.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	5.06930843433331	4.78128648981101	4.5626568693147	4.9644696888509	4.54353815809682	4.82422819123078	4.95286805103121	4.68662289456945	-0.230118423917943	0.514129361921303	0.776902467989904
Merged-chr5-72559244-3	chr5	72559151	72559351	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133921, exon 2 of 23)	exon (NM_133921, exon 2 of 23)	394.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	4.71269687892751	4.73720630807776	5.05765926881162	4.4112667230044	4.43267497362144	4.80889122191665	4.80353362425724	5.19602477675073	0.196372561615809	0.613445275638659	0.83329826063945
Merged-chr19-24953839-1	chr19	24953739	24953939	+	623.0	f0_c57.idr	intron (NM_146097, intron 3 of 14)	intron (NM_146097, intron 3 of 14)	7777.0	NR_033744	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	2.11777538422162	2.07738427088667	2.1179253175103	1.95824528847232	2.86039798764989	2.53880129167305	2.486085414166	2.89099835363071	4.79854945238257	4.73451550772323e-07	1.76531209703631e-05
Merged-chr8-13339159-4	chr8	13339106	13339306	+	834.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358991, intron 1 of 12)	CpG	402.0	NM_009361	21781.0	Mm.925	NM_009361	ENSMUSG00000038482	Tfdp1	Dp1|Drtf1	transcription factor Dp 1	protein-coding	3.45346457971214	3.72783156893536	3.63445602258069	3.46551546276775	3.60612084997547	4.22811288300361	3.67449007408952	3.88700364390392	0.876053308263016	0.0746941855532163	0.294714935337715
Merged-chr11-95827687-4	chr11	95827588	95827788	+	991.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153104, intron 1 of 2)	intron (NM_153104, intron 1 of 2)	3188.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	4.89882652883968	4.74159304916091	4.59581468881026	4.81582325417845	4.75716180517536	4.8126071835065	4.77131821743602	4.82699277199824	0.038334893650022	0.907611668444529	0.96572638861679
Merged-chr17-46772738-4	chr17	46772604	46772804	+	964.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025966)	promoter-TSS (NM_025966)	69.0	NM_025966	67101.0	Mm.358702	NM_025966	ENSMUSG00000062619	2310039H08Rik	-	RIKEN cDNA 2310039H08 gene	protein-coding	5.1698309581778	5.14273040457174	4.61987134825977	4.76502720029662	4.83317425432386	4.61678215765162	4.86708862354734	4.57324001457407	-0.419461194205044	0.242979003382353	0.553954148866228
Merged-chr9-59291522-4	chr9	59291422	59291622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028121)	promoter-TSS (NM_028121)	-50.0	NM_001359282	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	8.2350028685786	8.29676770563066	7.82059835097272	7.83712111032028	8.22171657611278	8.41405147877104	8.0592282319454	7.97207743872197	0.147756113363591	0.451483737809273	0.736071851703571
Merged-chr5-117348458-4	chr5	117348338	117348538	+	937.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033311, intron 7 of 9)	intron (NM_001033311, intron 7 of 9)	-8867.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	4.42510605807965	4.39567882427674	4.17850097595149	4.24752529460724	4.89465775807341	4.68745493603204	4.82148317197088	4.80926178545551	1.10098703873558	0.00164981369874334	0.0201363425166717
Merged-chr13-23575274-2	chr13	23575174	23575374	+	743.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178204)	promoter-TSS (NM_178204)	-489.0	NM_178204	319149.0	Mm.347699	NM_178204	ENSMUSG00000099583	Hist1h3d	H3-b	histone cluster 1, H3d	protein-coding	3.22605814742325	3.33285443573207	3.28997446650849	2.94300494750029	3.75244066912132	3.68761569580783	3.39511346815073	3.51538367445729	1.42542923864354	0.00761296474835095	0.0648340772700254
Merged-chr12-102380326-4	chr12	102380233	102380433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	59480.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.88958830124856	5.96587746863674	5.91325379495815	5.98889711746308	5.88002120249854	5.73083049886845	5.92696349782905	5.8160642902329	-0.16219433853827	0.500829707384844	0.769017904448726
Merged-chr9-55307756-1	chr9	55307656	55307856	+	703.333313	f0_balb.idr	Intergenic	B3|SINE|B2	-19157.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	3.96548309205265	3.83510743938855	3.83164033709311	3.63430841235821	3.62911818340237	3.79996509713114	3.49827486037785	3.38248714058167	-0.702902956433078	0.154235175639075	0.439444149764552
Merged-chr10-128058947-4	chr10	128058872	128059072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019766)	promoter-TSS (NM_019766)	-10.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	7.44672091485204	7.60430021254125	7.45769861718635	7.30589023588927	7.77972931777282	7.84758821645589	7.3100561686013	7.65709309489753	0.282352075983923	0.145784260810313	0.425569903895265
Merged-chr5-147992746-4	chr5	147992656	147992856	+	992.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029920, intron 1 of 14)	ORR1D2|LTR|ERVL-MaLR	35436.0	NM_029920	77521.0	Mm.244177	NM_029920	ENSMUSG00000029651	Mtus2	5730592G18Rik|A730013O20Rik|AU067634|C130038G02Rik|Cazip|Gm763|mKIAA0774	microtubule associated tumor suppressor candidate 2	protein-coding	5.07444953044563	5.26372059385754	5.20351130273684	5.20590372624408	5.01776900455477	5.4629035059657	4.7922328529756	4.89130300003659	-0.243614349605959	0.454071082138649	0.737923823729923
Merged-chr7-145034207-3	chr7	145034098	145034298	+	868.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9D|LTR|ERVK	-94273.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	3.66134394663047	3.47481180272719	3.1965643776574	3.58371909070549	3.57391076696407	3.6215499944735	3.49263699109743	3.6099813046178	0.254282646727361	0.615218884550316	0.834330392550527
Merged-chr11-95421263-2	chr11	95421163	95421363	+	853.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359107, intron 1 of 9)	intron (NM_001359107, intron 1 of 9)	7180.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	3.21958160333819	3.05703011972512	3.16022625884055	3.04818838498574	3.43932844817829	3.44586307060149	3.14900953975576	3.21831186123133	0.77521293043092	0.151674484928872	0.435394344360064
Merged-chr11-82048254-4	chr11	82048143	82048343	+	869.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013654)	TTS (NM_013654)	2531.0	NM_013654	20306.0	Mm.341574	NM_013654	ENSMUSG00000035373	Ccl7	MCP-3|Scya7|fic|marc|mcp3	chemokine (C-C motif) ligand 7	protein-coding	4.14138213914669	4.14130115201299	3.92947906154447	3.83934169915873	4.3626544544159	4.53792226336776	4.4256188652985	4.55482846502608	1.14242490014865	0.00362015627481755	0.037022859696155
Merged-chr19-8724023-3	chr19	8723870	8724070	+	887.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161413)	promoter-TSS (NM_001161413)	483.0	NR_002896	83673.0	Mm.292489	NR_002896	ENSMUSG00000108414	Snhg1	-	small nucleolar RNA host gene 1	ncRNA	3.26613366597214	3.25186749597172	3.20626451464011	2.90952184790769	3.60441528935606	3.38061110734541	3.13249296330456	3.48099210355276	0.953470300660227	0.0884001186366877	0.324442200909601
Merged-chr16-31029924-4	chr16	31029822	31030022	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 2 of 3)	intron (NM_198626, intron 2 of 3)	51510.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	6.71283280424379	6.66682959063044	6.5835566169058	6.45035130518295	5.95801201416264	5.67895717300895	6.8096518572499	6.43327326476332	-0.458601240734809	0.118190353583534	0.380285289653847
Merged-chr5-149015561-1	chr5	149015461	149015661	+	908.0	f1_balb.idr	Intergenic	CpG	8599.0	NR_040429	100503307.0	Mm.188008	NR_040429	ENSMUSG00000086610	Gm15408	-	predicted gene 15408	ncRNA	2.91691291487885	2.83751574195076	3.79610787086811	3.07327488999712	3.01284657684308	3.3587852309123	3.17110294574314	3.18172151540905	-0.0996376975103777	0.88045486854825	0.955181994949486
Merged-chr10-26751054-3	chr10	26750963	26751163	+	926.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21449.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	4.04621161283063	3.99805588257629	4.13410982381358	4.3307072993022	3.7549021325991	3.67617093555474	3.78342281687164	3.84974844648747	-1.06716674449813	0.0171384145817548	0.115225768538276
Merged-chr11-115105347-4	chr11	115105244	115105444	+	839.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	13913.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	4.18449184003231	4.20890052742761	3.86090308570148	3.85017213550989	3.90121541108849	3.92763950347121	3.94545288578599	3.80503006531186	-0.368494028816505	0.405467815155646	0.702294527678884
Merged-chr10-63174619-3	chr10	63174506	63174706	+	735.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182992, intron 2 of 19)	intron (NM_182992, intron 2 of 19)	29346.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	3.90068358020475	3.57466722560805	3.35877261723766	3.93633243552524	3.07625281258979	3.27412294339643	3.40583343419649	3.35708622014941	-1.54708866945596	0.00624495385273064	0.0558920621505739
Merged-chr11-116814706-3	chr11	116814597	116814797	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347633, intron 2 of 4)	intron (NM_001347633, intron 2 of 4)	13349.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	5.97291965863412	5.91662945956917	5.97402183541247	6.36074536006157	4.79102060665888	4.30884959479021	4.3420888031605	4.47601904932804	-2.97110449025655	4.3326617704354e-15	7.15532557210723e-13
Merged-chr13-91681680-3	chr13	91681580	91681780	+	802.883362	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 9 of 15)	intron (NM_001360776, intron 9 of 15)	-59841.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	3.64988168570493	3.57444043787239	3.70630929372139	4.12832461206201	4.13908235891212	3.58206093545004	3.84471433808146	3.85872492047896	0.22042454573534	0.66531936601426	0.86134534655382
Merged-chr2-24927171-3	chr2	24927096	24927296	+	811.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178408, intron 2 of 7)	intron (NM_178408, intron 2 of 7)	-7587.0	NM_001109686	77683.0	Mm.24176	NM_172545	ENSMUSG00000036893	Ehmt1	9230102N17Rik|D330003E03|Eu-HMTase1|GLP|GLP1|KMT1D|mKIAA1876	euchromatic histone methyltransferase 1	protein-coding	3.59508798469507	3.59535433689253	3.79139334966096	3.56819423102524	3.68424671225022	3.65752058675337	3.35321644799092	3.36290715594981	-0.34187136812752	0.496044392159287	0.766048551550322
Merged-chr7-75910163-3	chr7	75910074	75910274	+	798.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61836.0	NM_029652	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	3.35324594357341	3.19028881369706	3.41639227416061	3.38620571919498	3.86612516198177	3.76056873045282	3.81526957989998	3.73847762989054	1.45057299082328	0.00287480240794715	0.0309445867556568
Merged-chr10-39450513-4	chr10	39450406	39450606	+	863.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	L2a|LINE|L2	80707.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	4.1279660399511	4.24899936616419	4.55217493930874	4.35293956985077	4.21825633490327	4.25409051633275	4.49421472147742	4.12615595687382	-0.124379877667055	0.754658190934477	0.903394260200158
Merged-chr3-108044913-4	chr3	108044799	108044999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026764)	promoter-TSS (NM_026764)	-40.0	NM_001160411	14865.0	Mm.31203	NM_026764	ENSMUSG00000027890	Gstm4	1110004G14Rik|GSTM7-7|Gstb-4|Gstb4	glutathione S-transferase, mu 4	protein-coding	6.78944499769285	7.0267822939021	6.67252060226451	6.95886052703018	6.82617155456302	6.57544383216369	6.97439304103176	6.448696886509	-0.209529855832055	0.345205772190459	0.65351210560772
Merged-chr19-40305604-3	chr19	40305508	40305708	+	980.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034962, intron 20 of 22)	MIR3|SINE|MIR	-33992.0	NM_016861	54132.0	Mm.5567	NM_016861	ENSMUSG00000055044	Pdlim1	CLP36|Clim1|mClim1	PDZ and LIM domain 1 (elfin)	protein-coding	5.15781209628878	4.32822418749027	5.21000763375231	5.25773788821749	4.20179999889726	4.3156646175893	4.05127729457407	4.12421841409708	-1.94803549630022	6.66603151032042e-06	0.00019163225237201
Merged-chr4-116177141-4	chr4	116177076	116177276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3804.0	NM_001099295	67323.0	Mm.45442	NM_001099295	ENSMUSG00000078593	1700042G07Rik	-	RIKEN cDNA 1700042G07 gene	protein-coding	5.60651725397801	6.29450855703208	6.00717138770009	5.20041777505117	5.4004005506642	5.46196425629387	5.2887315790069	5.20927970785949	-0.835782399135686	0.0155812329136119	0.107737142898115
Merged-chr17-80798542-2	chr17	80798442	80798642	+	866.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70517.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	3.16076066344525	3.10892266613299	3.03065586293196	2.88708622393221	3.31063164848197	3.50543630379092	3.26694877129721	3.48706608423652	1.349509175122	0.0131075243813517	0.0955433157132858
Merged-chr15-103552300-4	chr15	103552207	103552407	+	834.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12774.0	NM_001289587	14663.0	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	4.04429429082873	3.84126458151294	3.94322854237127	3.97611673055792	4.07560945389659	4.39608926360993	4.07505802910561	4.34526478113732	0.702623565812889	0.0896125564503971	0.326791509371688
Merged-chr9-109054880-4	chr9	109054772	109054972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026381)	promoter-TSS (NM_026381)	6.0	NM_026381	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	8.44015308249737	8.77886517620832	8.75536474142609	8.33457324895859	8.47146836878177	8.87486321835542	8.42295758528479	8.31734569505872	-0.0632321638333526	0.744288428341944	0.899239415948819
Merged-chr9-83540414-6	chr9	83540312	83540512	+	869.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7926.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	4.13558750088877	3.75147001046321	4.09174415318317	4.0391237787698	4.00885768270969	3.96398412781994	3.82767598119974	4.29703899647957	0.0643850994795152	0.883483707557623	0.956229651788882
Merged-chr1-82927330-4	chr1	82927239	82927439	+	843.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	87879.0	NM_001347077	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	3.72375192169327	4.2016431621281	4.27815027983703	3.95976505225562	4.03558776944135	4.12907984178536	4.21718385597653	4.27537988428708	0.284041704392901	0.50826266194018	0.773396125844835
Merged-chr2-167361817-4	chr2	167361711	167361911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12633.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	6.17753783377396	6.00403257290685	5.86062918656767	6.04778950545564	6.14641140605609	6.08357790217544	5.83090021388394	5.7820953286817	-0.0798907546616341	0.747940752326167	0.900777917633449
Merged-chr14-27381595-4	chr14	27381483	27381683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 4 of 10)	URR1A|DNA|hAT-Charlie	20194.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	6.38640170546244	6.46588864738022	6.87472969722657	6.68712525373564	6.37579034605923	6.16781802314861	6.42468719629874	6.38296286356937	-0.405093923745173	0.0760333310554964	0.297838946738032
Merged-chr10-80933833-4	chr10	80933729	80933929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3738.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	7.47271619117992	7.51131151790209	6.75113339179364	6.66582430927643	7.1049477115869	7.5776866777482	7.24648138898258	6.90858228538635	0.102742865736882	0.705632796605517	0.881790297238375
Merged-chr17-47010548-4	chr17	47010465	47010665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177374)	promoter-TSS (NM_001177374)	-33.0	NM_001177374	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	7.27724662347574	7.39962856074564	6.72709194863722	7.17164377728504	7.60922925013307	7.3903032631611	7.58300308190781	7.1853940760491	0.385283984157429	0.0762612794433734	0.298263009064823
Merged-chr2-126876269-4	chr2	126876153	126876353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021450)	promoter-TSS (NM_021450)	8.0	NM_001164325	58800.0	Mm.244705	NM_021450	ENSMUSG00000027365	Trpm7	2310022G15Rik|4833414K03Rik|5033407O22Rik|CHAK|CHAK1|LTrpC-7|Ltpr7|Ltrpc7|TRPPLIK	transient receptor potential cation channel, subfamily M, member 7	protein-coding	7.41869698011831	7.73164924124301	7.2144968846753	7.43103149213956	7.55967182736096	7.9433263976088	7.46030889004789	7.6990166338163	0.277445781015261	0.168859319287437	0.461341589819388
Merged-chr3-40744394-4	chr3	40744327	40744527	+	932.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1186.0	NM_011020	18415.0	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	4.5001244147294	3.92512200216154	4.84835537775416	4.58585965068907	4.02848793324429	3.96520708080733	4.69726532744444	4.61242658228555	-0.31464743606328	0.511961976921129	0.775668292015302
Merged-chr14-67097127-1	chr14	67097027	67097227	+	770.5	f0_balb.idr	Intergenic	Intergenic	-24656.0	NM_001205188	71978.0	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	3.77095237164706	3.13395474886189	3.63126021040788	3.58655250191863	3.26736625010016	3.58980294648164	3.40345334215414	3.4715665911115	-0.387493893916793	0.476120928574705	0.752752032426828
Merged-chr11-79202702-3	chr11	79202616	79202816	+	793.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40308.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	3.81725784495261	4.13745956253122	4.12748978653386	3.32220357827855	3.53257796915704	3.835225158046	3.58665715215977	3.59857139001068	-0.730561648445338	0.17384742629607	0.468013841010893
Merged-chr17-50530354-4	chr17	50530239	50530439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	20792.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	5.9903108565997	6.07520621729189	5.76544391480226	6.22199161779496	5.4958042864812	5.75689756518782	5.63383400905438	5.57535469469574	-0.698352944054351	0.00772301258273284	0.0655126102522156
Merged-chr3-51914049-3	chr3	51913937	51914137	+	718.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	190969.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	3.03355305732195	3.10323310079072	2.97665865977351	2.89914675632711	2.63390655982127	2.82419323674565	2.9062231082682	2.85243385949407	-0.917581117731204	0.144405191969309	0.423506982340208
Merged-chr7-92698862-4	chr7	92698764	92698964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28952.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	6.44010387117227	7.58527211076901	6.96588540990432	6.54120419530182	7.72646363459174	7.79015610027817	7.41348623173085	7.12446654964265	0.774313889823809	0.00791258618892244	0.0666915301765909
Merged-chr13-117311699-4	chr13	117311582	117311782	+	868.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91109.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	3.80032765037491	3.82397815334954	3.57984840280224	3.83997286358126	3.94495667747495	3.97147295955691	4.0140031120344	3.38491447480596	0.245296705529453	0.617527992704729	0.8356253800703
Merged-chr7-66839593-4	chr7	66839495	66839695	+	977.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033877)	promoter-TSS (NM_001033877)	-140.0	NM_001033877	233332.0	Mm.445763	NM_001033877	ENSMUSG00000058145	Adamts17	AU023434	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17	protein-coding	5.37591087151671	5.65114629173602	4.92351158501956	5.48710384316914	4.9171772974136	4.89634894543366	5.1761657218357	4.95846476311945	-0.757682632596858	0.0210188874342381	0.132406582852884
Merged-chr7-63858687-4	chr7	63858578	63858778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58179.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	5.96104650565829	6.35639372523352	6.03072900488468	6.61329650284829	6.38102312721559	6.11409847665102	6.38370709025848	6.19461596452957	-0.0191619765622922	0.941647917786806	0.978976588280915
Merged-chr3-52017929-4	chr3	52017836	52018036	+	946.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	87070.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	5.60942171212296	6.36113096205828	5.49822297989354	4.60701303836444	5.89065087119068	6.13473460190634	5.75583530782563	5.16299496707033	0.161968539857634	0.797664576154435	0.921862017583033
Merged-chr9-37421461-3	chr9	37421371	37421571	+	739.31665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164767, exon 16 of 28)	exon (NM_001164767, exon 16 of 28)	11704.0	NM_001164767	19649.0	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	3.43861584309728	3.16595516924958	3.17762323904275	3.4885436129664	2.97972935127113	2.95652023089949	3.16577705152644	2.92076330465177	-1.31206879652549	0.0281132273873125	0.160483712583328
Merged-chr6-54019421-3	chr6	54019388	54019588	+	611.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20444.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	2.58001724002648	2.52296566382992	3.08196218253985	2.85755133727607	2.73275369255272	2.89948235021531	2.96143924743742	2.97182798986527	0.49692764046511	0.464222008397263	0.745287689550157
Merged-chr9-114581579-3	chr9	114581483	114581683	+	761.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17214.0	NM_001042503	636931.0	Mm.17857	NM_001042503	ENSMUSG00000079259	Trim71	2610206G21Rik|AL022943|Gm1127|Lin41|lin-41|mLin41|mlin-41	tripartite motif-containing 71	protein-coding	3.04576813723383	3.05935215981939	3.16827068866907	3.27913095775192	2.89391462272203	3.1558721655993	3.21262902039261	3.38034558142413	0.0740151434732473	0.898957035463606	0.962375626232471
Merged-chr15-98881470-4	chr15	98881363	98881563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026967)	promoter-TSS (NM_026967)	-49.0	NM_026967	69159.0	Mm.259708	NM_026967	ENSMUSG00000023755	Rhebl1	1810036J22Rik|Rheb2	Ras homolog enriched in brain like 1	protein-coding	7.48242045240777	7.44869400823078	7.38739582621001	6.91890023673115	7.76175829113231	7.46066116442241	7.83963797202049	7.15228468933481	0.355832431656567	0.12323110073291	0.389185665057583
Merged-chr10-98946283-4	chr10	98946194	98946394	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	31142.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	5.25455966747709	4.58998293956001	5.3692804778	5.41502415762085	5.0865653385522	5.01575229601696	5.3422164083922	5.19085756448549	-0.0744697803479788	0.830597550130759	0.93499882818844
Merged-chr15-79347825-1	chr15	79347725	79347925	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_001304831)	promoter-TSS (NM_001304831)	-236.0	NM_001304831	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	4.83995380430696	5.79666108768151	4.97091012917645	4.77701392255721	5.95248437233917	6.01664187655906	5.68105106926566	5.58372004299582	1.12120696988672	0.00188890092707352	0.022363619276142
Merged-chr8-120510188-4	chr8	120510059	120510259	+	924.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	21293.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	4.78102218461041	4.6611289192699	4.97582880246637	4.63706588296957	4.31568498253169	4.59713430290826	4.44568890276021	4.59053976481628	-0.610749390360862	0.0919007570871766	0.331546071399298
Merged-chr1-135811468-3	chr1	135811353	135811553	+	860.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001112702)	TTS (NM_001112702)	-7145.0	NM_133664	16763.0	Mm.36726	NM_133664	ENSMUSG00000041782	Lad1	LADA|lad-1	ladinin	protein-coding	3.13501339012955	3.29113982536986	3.19862128310898	2.97875924466775	3.28563569530659	3.59287918650187	3.24666202095991	3.42290415795772	0.898092047930223	0.0971999676534858	0.341632274227805
Merged-chr5-134232275-4	chr5	134232182	134232382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2657.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	6.00204511709816	6.97736986590606	5.8869584644788	5.90573673390666	6.26575259025362	6.22363344259608	5.70290714935009	5.55235968018731	-0.471672122175583	0.181441306836742	0.478113830124851
Merged-chr4-139287630-3	chr4	139287536	139287736	+	894.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 7 of 9)	intron (NM_001037761, intron 7 of 9)	23072.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	4.13209786041602	3.88060166837826	3.84961247834763	3.70994663830007	4.22475609245821	3.97075898995567	3.93434647373119	3.84744243186041	0.333507108004215	0.455081615464902	0.738746012503745
Merged-chr15-67172869-4	chr15	67172772	67172972	+	916.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 1 of 8)	intron (NM_009177, intron 1 of 8)	4010.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	4.48769536703341	4.58959754040446	4.5282641345466	4.42605117488305	4.38860954153707	4.24135094598044	4.58258282516383	4.31262862282563	-0.265596269223567	0.474757842648737	0.751855589262771
Merged-chr11-49243910-4	chr11	49243788	49243988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010794)	promoter-TSS (NM_010794)	-303.0	NM_010794	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	8.5041896162097	8.5077390184247	8.33041387144568	8.41647143017048	8.73225363435685	8.88446049534159	8.68756724068144	8.65357606129933	0.376980254581803	0.0114949071031915	0.0870917716168665
Merged-chr16-70104158-3	chr16	70104056	70104256	+	914.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-209793.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	3.39804915251359	3.119723158137	3.21923702752895	4.02004452279029	3.16443772834181	3.33181260805333	3.38522516428038	3.39665095726362	-0.627904283035595	0.306942815729768	0.619284645348604
Merged-chr13-114885360-3	chr13	114885256	114885456	+	983.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008396, intron 3 of 29)	intron (NM_008396, intron 3 of 29)	46744.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	4.62627576681775	4.52449736067379	5.15589126748596	5.10889563683513	4.13378125024563	4.18277229683414	4.30422517670419	4.32050629552344	-1.49650177210156	0.000200990485685804	0.0036551614155927
Merged-chr7-72162482-1	chr7	72162382	72162582	+	766.75	f0_balb.idr	intron (NM_001024703, intron 16 of 22)	intron (NM_001024703, intron 16 of 22)	144113.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	3.49907424168593	3.47572345049127	3.72265535928761	3.63954098280449	2.80494336331676	3.07680706271119	2.80353960592995	2.809129209193	-3.41379838803188	5.4513972371019e-06	0.000160274681511638
Merged-chr7-143473675-4	chr7	143473579	143473779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008767)	promoter-TSS (NM_008767)	-76.0	NM_008767	18400.0	Mm.271740	NM_008767	ENSMUSG00000000154	Slc22a18	AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A	solute carrier family 22 (organic cation transporter), member 18	protein-coding	6.26908233668	6.18695802101236	6.06536949447474	6.38465657883174	6.45327024632085	6.15127439743559	6.44562775451454	6.37425283080792	0.184919692323491	0.419364373547956	0.712515966395674
Merged-chr17-56626927-4	chr17	56626809	56627009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028782)	promoter-TSS (NM_028782)	-6.0	NM_028782	74142.0	Mm.329136	NM_028782	ENSMUSG00000041168	Lonp1	1200017E13Rik|LON|Prss15	lon peptidase 1, mitochondrial	protein-coding	6.79388964593325	6.69734100071383	6.57615241785539	6.34134638362022	6.78047272175999	6.56447111623438	6.21848879586446	6.66361742957697	-0.0303155578064697	0.898699362759097	0.962303043708153
Merged-chr2-118790823-3	chr2	118790692	118790892	+	950.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_170593, exon 8 of 8)	exon (NM_170593, exon 8 of 8)	11073.0	NM_170593	214240.0	Mm.221499	NM_170593	ENSMUSG00000040035	Disp2	AI840597|B230210L08Rik|DispB|mKIAA1742	dispatched RND tramsporter family member 2	protein-coding	3.999435886687	4.05808529343406	3.5748976587908	4.02022400704813	3.68260431214673	3.75420514340949	4.0687738548144	3.85418956127186	-0.250609461694383	0.592784763231432	0.822397929572839
Merged-chr10-21777350-4	chr10	21777245	21777445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	86500.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	7.22582374955741	7.2306691891827	7.56055163763525	7.53194734375755	6.94645259130293	6.83602667145989	7.11228206181415	7.33667207661136	-0.450193142466976	0.0301570784837941	0.167843513128312
Merged-chr16-32651195-4	chr16	32651116	32651316	+	917.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110147, intron 1 of 13)	intron (NM_001110147, intron 1 of 13)	6573.0	NM_016788	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	3.82242002276238	4.5663223471331	4.51291509975289	4.60423451000814	4.44319542930904	4.33959181183029	4.19474563747019	4.34735752110935	-0.199801384427772	0.643969140664184	0.850046908802106
Merged-chr7-25577063-1	chr7	25576963	25577163	+	786.75	f0_balb.idr	Intergenic	Intergenic	-37059.0	NM_001113369	26367.0	Mm.439731	NM_007543	ENSMUSG00000054385	Ceacam2	AI267129|Bgp2|Ceacam2-L	carcinoembryonic antigen-related cell adhesion molecule 2	protein-coding	3.09141159169562	3.0544481204728	3.03720752324986	2.26628707290189	2.84074646246976	2.90366587719626	2.64309787579448	2.79087875723961	-0.514531287604675	0.509282491424952	0.773960180154769
Merged-chr2-11391101-4	chr2	11391011	11391211	+	996.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040615, intron 1 of 2)	intron (NR_040615, intron 1 of 2)	7389.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	5.50277487723214	5.05933888142359	5.53003459916262	5.85469928816943	5.36233690865573	5.6502657895032	4.92317110201813	5.20194606985662	-0.387266223250119	0.256525940280695	0.568162252716061
Merged-chr6-123095470-8	chr6	123095366	123095566	+	902.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27224.0	NM_001170332	26888.0	Mm.47384	NM_011999	ENSMUSG00000030148	Clec4a2	Clec4a|Clecsf6|DCIR|Dcir1	C-type lectin domain family 4, member a2	protein-coding	3.66852886264084	3.60859160679255	3.85230826680424	3.34416205061694	3.46542889682477	3.4472709254034	3.38311152739822	3.50987263422446	-0.552097118403041	0.285973007389121	0.59757930169056
Merged-chr11-69684493-4	chr11	69684390	69684590	+	895.895874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001034097, exon 10 of 13)	exon (NM_001034097, exon 10 of 13)	1064.0	NM_001159505	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	4.41033611102927	4.06756718561828	4.32701659074464	4.64287158444205	4.20502445575774	4.31597672426109	4.07261085506522	4.48685940281871	-0.27894258757699	0.501821241176624	0.769427527857117
Merged-chr8-3672136-4	chr8	3672061	3672261	+	955.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357661, intron 1 of 1)	intron (NM_001357661, intron 1 of 1)	230.0	NM_001357661	100503924.0	Mm.415621	NM_001357661	ENSMUSG00000089665	Fcor	2400009B08Rik	Foxo1 corepressor	protein-coding	4.91175574994879	4.77812483676653	5.25883438506036	4.67576110401596	4.36702206798175	4.61428477606637	4.85500239160139	4.43106196018454	-0.717354855175646	0.0582018937219375	0.253518915196976
Merged-chr15-103552747-4	chr15	103552634	103552834	+	918.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12347.0	NM_001289587	14663.0	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	4.58220813529763	4.92919610860538	4.54058389004114	4.98941243499718	4.55157801749259	4.4349800676046	4.56203783728774	4.84224793437982	-0.397994028926903	0.281080943932136	0.593153291080506
Merged-chr11-108252123-4	chr11	108252007	108252207	+	932.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	91781.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	4.33872015648421	4.55339477729294	4.59050920969796	4.32871996247047	4.66104134264136	4.79463128012756	4.22706964961813	4.38192471697146	0.19884850424285	0.606136283476362	0.829351704182035
Merged-chr5-119058586-7	chr5	119058466	119058666	+	987.127014	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49670.0	NR_040693	73477.0	Mm.410863	NR_040693	ENSMUSG00000100573	1700081H04Rik	-	RIKEN cDNA 1700081H04 gene	ncRNA	4.02907117646091	4.11821418438614	4.12605962657593	4.22798329902891	4.32018834436603	4.15253085324121	4.10832049337838	4.02732567191062	0.0731628350719699	0.857096377274941	0.94616653253742
Merged-chr6-22359199-4	chr6	22359097	22359297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-3116.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	6.70005155065743	6.71010599822697	6.73078658144439	6.95215157257284	6.6192895743619	6.4374890349403	7.13354165281414	6.55421878305212	-0.0993352469248432	0.673472572984532	0.865743878067327
Merged-chr7-19501874-4	chr7	19501766	19501966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6465.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	5.80655299430082	5.85853906552478	5.92481421261564	5.96979272455846	6.11127494054711	6.00712487715786	5.93844123515546	5.72795148087261	0.101134554895562	0.682077575915854	0.869682098720609
Merged-chr2-71368453-4	chr2	71368343	71368543	+	894.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172436)	promoter-TSS (NM_172436)	-889.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	4.32347179597574	4.45303578513899	4.4855766393609	4.26606901902824	4.45723221439595	4.10373742779836	4.17008807653017	4.23218228091288	-0.287829339407751	0.466543667878128	0.746420287776482
Merged-chr12-103345241-4	chr12	103345161	103345361	+	940.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	10740.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	4.37803814421284	4.24257359196548	4.51112942489429	4.52965627932864	4.68109946992765	4.55498656839738	4.5709644668523	4.96092233965228	0.603653093765442	0.0997610180623971	0.346500478934587
Merged-chr11-87122090-4	chr11	87121985	87122185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025377, exon 4 of 4)	3' UTR (NM_025377, exon 4 of 4)	-4990.0	NM_197987	68729.0	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	5.76043759624165	6.22565846318531	5.73508329275296	6.10261447623907	6.11199569653459	6.06156811555441	5.90191901338297	6.05773506231944	0.0787516466699909	0.758228650727868	0.905050260433306
Merged-chr10-89686289-4	chr10	89686210	89686410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_130956)	promoter-TSS (NR_130956)	-16.0	NM_001310704	213326.0	Mm.27651	NM_198021	ENSMUSG00000069539	Scyl2	AU015688|AW536445|BC030932|CVAK104|D10Ertd802e	SCY1-like 2 (S. cerevisiae)	protein-coding	7.86030845780792	7.83094276420245	7.65714907351366	8.00619771182882	8.10985732526721	8.03166739561312	8.34982748374984	8.02535696391981	0.365470325611039	0.0367892085186859	0.191042465393707
Merged-chr16-23346979-4	chr16	23346870	23347070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 5 of 7)	MTEa|LTR|ERVL-MaLR	56500.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	5.70988458756314	6.45998636678148	6.19533015334712	5.59440924613359	6.05580489792608	5.62569236745315	6.0885322470223	5.75932225312151	-0.20531035498892	0.508300534106681	0.773414359067538
Merged-chr11-63130719-4	chr11	63130595	63130795	+	855.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008885)	promoter-TSS (NM_008885)	-762.0	NM_008885	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	3.53221073555246	3.50868853199888	3.79329300222376	3.90863967121982	3.37454802064981	3.46118656894957	3.72930642550759	3.83717742342863	-0.297399286349256	0.562988040124058	0.805971957119676
Merged-chr11-106122899-4	chr11	106122777	106122977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 5 of 15)	intron (NM_011947, intron 5 of 15)	37050.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	6.34734656694841	6.52648883511025	6.19911843383784	6.38981088327653	6.14204491069587	6.1612263596903	6.22521392888143	6.04785575093351	-0.348537123074307	0.121961600390928	0.387048230158539
Merged-chr9-97105587-4	chr9	97105489	97105689	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138756, intron 1 of 6)	intron (NM_138756, intron 1 of 6)	5452.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	5.47215289951929	5.21933503373788	5.36292051620981	5.30886187409396	5.33625902614162	5.24948811535597	5.41927609829755	5.20629500212052	-0.0554347082731901	0.845207027895284	0.941451408856064
Merged-chr15-89315346-4	chr15	89315259	89315459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170561)	promoter-TSS (NM_001170561)	-48.0	NM_001170561	77980.0	Mm.35483	NM_030019	ENSMUSG00000036529	Sbf1	2610510A08Rik|B230113C15Rik|Mtmr5|mKIAA3020	SET binding factor 1	protein-coding	8.16228940268713	8.13555839572251	7.83731962211511	8.16652968220449	8.10631986086869	7.9512968825906	8.29740984864306	7.69251301676284	-0.0673814585510443	0.724071335506409	0.889978822137985
Merged-chr12-83582239-3	chr12	83582139	83582339	+	720.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359167, intron 3 of 12)	intron (NM_001359167, intron 3 of 12)	14983.0	NM_001359167	217695.0	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	3.33332465733797	3.60586150347263	3.44491224635405	3.30646920126608	3.22801620655175	3.38701679323452	3.2015228290689	3.44296554507058	-0.387996819677773	0.463646115042107	0.744929502563814
Merged-chr18-84439004-3	chr18	84438885	84439085	+	849.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 3 of 8)	L1_Mus3|LINE|L1	150519.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	3.38911061255066	3.16287664957499	3.67791557383571	3.22059054359733	3.0282773329458	3.26600335956459	3.26442365085596	3.33258069514887	-0.543413025594466	0.337908169019997	0.647707372291549
Merged-chr10-68275548-4	chr10	68275472	68275672	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	3154.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	5.75150470654706	6.75330153632683	5.31373573090924	5.12486866423952	6.38139375872645	6.85188876446208	5.89607091699955	5.80059189014104	0.586373258532349	0.378759643868643	0.681300262589424
Merged-chr11-8579519-4	chr11	8579422	8579622	+	992.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	85013.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.4114675142439	5.55431115124784	5.32630322255025	5.09991497507233	5.54536725833239	5.52913045925972	5.07470609343343	4.90566335637609	-0.0860599162086977	0.793790690759492	0.92022175040272
Merged-chr9-100506866-4	chr9	100506754	100506954	+	923.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324530)	promoter-TSS (NM_001324530)	2.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	4.81845162294355	5.22983910813003	4.70247338444224	4.51737716158502	5.31777809704533	4.61532914048531	5.11959682212643	4.27152505916207	0.123609944198669	0.774312014763819	0.911799562721906
Merged-chr4-132563499-4	chr4	132563419	132563619	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081211)	promoter-TSS (NM_001081211)	-548.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	4.94309314400745	5.04514100522388	4.70183444937965	4.82580918148901	4.74455191279244	4.58161743166159	4.33543404612094	4.24818003045336	-0.814355497741334	0.0295690443959928	0.165619689255774
Merged-chr18-54848913-4	chr18	54848818	54849018	+	933.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141262.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	4.57622266552593	4.49244619201135	4.77047275156633	4.4852520788041	4.77471573083844	4.62232214985715	4.97454186197999	4.65487228193148	0.407628666238412	0.241582213063178	0.552095946305271
Merged-chr4-147848481-4	chr4	147848425	147848625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355730)	promoter-TSS (NM_001355730)	-107.0	NM_198619	242747.0	Mm.332053	NM_198619	ENSMUSG00000059423	Zfp933	2810408P10Rik	zinc finger protein 933	protein-coding	6.069189468073	6.33157408097123	5.66465889711735	5.37179359464093	6.23850079075899	6.51793460561227	5.88815101090887	5.60332221801564	0.316217194449814	0.347030509606195	0.655119603322089
Merged-chr10-96333457-4	chr10	96333381	96333581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	107274.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	7.2152439280116	7.30402694312595	7.19410042296355	7.2764016873742	7.35741307228397	7.30165270835843	7.52583837296544	6.94012301935931	0.0682511207440965	0.729295432578229	0.892556704127014
Merged-chr15-6601513-4	chr15	6601393	6601593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	21646.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	6.35574977825217	6.57421598195237	6.84893422326619	6.70740342786482	6.53010656285103	6.62422239109501	6.12182301797795	6.59145850331559	-0.225940025634286	0.33585739834308	0.646029943887149
Merged-chr3-79525228-4	chr3	79525139	79525339	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	42440.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	4.89733049505225	5.07921932783793	5.08173599311828	6.13873391847733	4.72889230157819	4.62410033976707	5.12277935618947	5.35406244259031	-0.789342419743738	0.0689560340698809	0.280646208991941
Merged-chr5-103722746-4	chr5	103722646	103722846	+	699.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-31416.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	3.65952984897693	3.42273982617957	3.0642960376836	3.19727859243529	3.55303460543543	3.38668821635963	3.73487904195522	3.60915352066211	0.762010937192407	0.158860868853691	0.446064231358103
Merged-chr17-74807509-3	chr17	74807434	74807634	+	951.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152817, intron 13 of 19)	intron (NM_152817, intron 13 of 19)	89784.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	3.04106064484221	2.8825398800814	2.89088127448126	2.71064135746855	3.87151752948214	3.78690674414965	3.16562521693495	3.61433321449215	2.96408901664027	7.39396325158081e-07	2.6500247244928e-05
Merged-chr14-30325245-4	chr14	30325172	30325372	+	854.8583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 3 of 46)	MLT1K|LTR|ERVL-MaLR	28214.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	4.33335159167967	4.18774883535633	4.06520508222676	4.30585341510837	4.22848785944869	4.08335843721295	4.18837242096753	4.15874537342549	-0.161055387360388	0.685324072947388	0.871330007833379
Merged-chr16-4879838-4	chr16	4879740	4879940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145359)	promoter-TSS (NM_145359)	11.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	6.63548752099098	7.0529865706582	6.44388440263342	6.74973184831587	6.84460207740856	7.24806199049826	7.02494074683399	6.99623359950539	0.398332406279675	0.0745184674269746	0.294266296420784
Merged-chr9-21446407-4	chr9	21446289	21446489	+	924.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 1 of 19)	intron (NM_001357721, intron 1 of 19)	21481.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	4.0284426067611	3.86758419971982	3.82520124587975	3.98080169485103	3.86406309382305	3.76818682500746	4.18535168406799	4.39162941235756	0.382347161105436	0.396454859021703	0.69519327480908
Merged-chr18-61092095-2	chr18	61091995	61092195	+	799.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13477.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	2.87383722387107	2.78049820015767	2.93361027992893	2.90454100140879	2.85673880163166	2.54918782617662	2.86397367656296	3.04290874157071	-0.148883806042234	0.817606447501687	0.929973193387846
Merged-chr15-81860990-4	chr15	81860880	81861080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2654.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	5.0857763305058	4.99971376461535	4.70676336724047	4.97494050756367	5.08013981294624	5.19336918258475	5.09396085313504	5.42600141522427	0.474049177099144	0.131185425540221	0.403179939746434
Merged-chr9-41129446-4	chr9	41129338	41129538	+	663.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	RSINE1|SINE|B4	28624.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	3.69892024484138	3.74705776988985	3.64336406795511	3.75680914366645	4.01320276357674	3.81761389560307	3.738149590203	3.98994344922576	0.530299968264396	0.235101211413549	0.545090199583224
Merged-chr10-121505452-4	chr10	121505350	121505550	+	935.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29200.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	4.46144099937482	4.15529592918198	4.23323367506014	4.4754561991384	4.68836390273956	4.50479637516328	4.48266339284329	4.7565633167824	0.60322651419325	0.107516640428021	0.361601159942644
Merged-chr13-37658743-4	chr13	37658661	37658861	+	726.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167277.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.71447487782026	3.7734437612668	3.87764830948706	3.72999334960889	3.86953576780675	4.14603962182802	4.04857975615665	4.10755559031438	0.751073330799377	0.0809356823683803	0.308664859370925
Merged-chr5-113644697-4	chr5	113644629	113644829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	-1126.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	7.86532062902458	8.27144324450765	8.11110708596975	7.90283945301067	8.01238843167016	8.1311118508963	7.88711823376175	7.60414792352702	-0.157367005036291	0.412135148490315	0.707370638142127
Merged-chr8-119782905-4	chr8	119782798	119782998	+	865.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4482.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	4.11898897644999	4.28919208911984	4.35750248515189	4.17295405438584	4.56280359205468	4.52958327094294	4.3802179356763	4.51751973008637	0.634367354925465	0.0871614889176952	0.321966452605956
Merged-chr15-100666424-3	chr15	100666306	100666506	+	893.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270537, intron 1 of 10)	intron (NM_001270537, intron 1 of 10)	3094.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	3.53291907151269	3.35099262084112	3.18114516487918	3.4702888734974	3.1892027710911	3.59717168324796	3.7067359623706	3.307660528582	0.231901575118027	0.670255997441412	0.863963841647699
Merged-chr7-134689276-4	chr7	134689171	134689371	+	911.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033420, intron 1 of 51)	intron (NM_001033420, intron 1 of 51)	18584.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	4.39774195605943	4.5853146749611	3.99290076496218	4.15941250019526	4.7364994588557	4.28724658020113	4.68397128472484	4.6335065311202	0.691870411405251	0.0831357412491914	0.313342462701748
Merged-chr10-14086367-4	chr10	14086256	14086456	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010437, intron 2 of 8)	intron (NM_010437, intron 2 of 8)	119977.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.92630178136808	5.64223970708323	5.3194156351005	4.47251803929815	5.45175608911376	5.37586538577596	5.04660729508728	4.62558724598266	0.00932981271120493	0.982269231652911	0.993659734511288
Merged-chr5-138171200-4	chr5	138171098	138171298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021392)	promoter-TSS (NM_021392)	68.0	NM_001356577	17220.0	Mm.378965	NM_008568	ENSMUSG00000029730	Mcm7	AI747533|Mcmd7|mCDC47	minichromosome maintenance complex component 7	protein-coding	6.92215323459281	6.89220310774691	6.81662479685012	6.60950024803832	7.00761861385445	7.08655575263713	6.75393552362388	6.4971502077572	0.0753753486477343	0.736286121101087	0.895944255036988
Merged-chr5-65984257-4	chr5	65984158	65984358	+	937.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17134.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	4.62381456091199	4.42768484367857	4.40504506577079	4.81727353883602	4.89454213172031	4.8368400256664	4.85598238592813	4.5805952247085	0.426912662267135	0.238693993634933	0.549054538941201
Merged-chr11-73007931-2	chr11	73007831	73008031	+	980.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_008771, intron 1 of 11)	intron (NM_008771, intron 1 of 11)	8786.0	NM_008771	18436.0	Mm.25722	NM_008771	ENSMUSG00000020787	P2rx1	AI323649|BB122383|P2x|Pdcd3|RP-2	purinergic receptor P2X, ligand-gated ion channel, 1	protein-coding	2.68344949030342	2.77278458943121	2.75069394108125	2.46786776663819	2.9265121330389	2.98479514469465	2.80415752080132	2.81299012303502	1.05350781512923	0.0978688810534023	0.342808389838201
Merged-chr9-99353113-4	chr9	99353006	99353206	+	901.7958369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177775, intron 1 of 22)	ORR1E|LTR|ERVL-MaLR	5424.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	4.34925755717739	4.79250873856783	4.34989293213307	5.02207031601447	4.50258271396182	4.96042939690296	5.05799556324782	5.07996758761584	0.476380116623824	0.241567113738464	0.552079164835131
Merged-chr15-84351462-4	chr15	84351340	84351540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25321.0	NM_001162500	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	5.4063074853379	5.06673655220467	5.96392239925644	6.30613365974132	5.61347444765294	5.81493201225424	5.52873471297474	5.8529976927275	-0.13668177359407	0.702172170801263	0.880036500016958
Merged-chr18-67245635-7	chr18	67245520	67245720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357518, exon 1 of 11)	5' UTR (NM_001357518, exon 1 of 11)	210.0	NM_172630	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	4.93764681886464	4.72154964777162	5.3531918882312	5.15637910527198	5.10459831893981	5.11520699290919	5.21335972719982	5.4025777734902	0.272340446606635	0.402171227324756	0.69973468075651
Merged-chr13-55016694-4	chr13	55016591	55016791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206392, intron 1 of 17)	intron (NM_001206392, intron 1 of 17)	4128.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	5.67116930626801	6.11346791851337	5.69873405898394	5.63531146537408	6.03069991148519	6.06811877622311	5.37793326197418	6.11541501781889	0.225298590756453	0.443592157874117	0.730095641439217
Merged-chr9-66593579-3	chr9	66593495	66593695	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302116)	promoter-TSS (NM_001302116)	-480.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	5.05230069132358	4.73594818718127	4.75086920249483	4.67562206827106	4.85723464082218	4.84694622071431	4.76552636454812	4.45073901092675	-0.118848602690745	0.734607352933638	0.895082097863042
Merged-chr1-152686094-4	chr1	152686015	152686215	+	929.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-60898.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.37056711367059	5.11147483655245	5.24211049226262	5.12251296626247	4.6918804191794	4.86700141256882	4.45108719360716	4.56043735660682	-0.731426971371098	0.0586808286149334	0.254965370527551
Merged-chr2-136892122-4	chr2	136892024	136892224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141946)	promoter-TSS (NM_001141946)	-44.0	NM_028834	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	8.15332050942817	8.03735287546417	8.08452832034219	8.14381530506818	8.50829227926522	8.14545555039967	8.51038759963855	8.17986760178772	0.313862649985314	0.063112269019427	0.266492744648146
Merged-chr5-66083527-4	chr5	66083442	66083642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	B3|SINE|B2	14637.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.86428897943363	5.93698176480025	5.60187638790118	5.48247170371441	6.18220317338306	6.27764737537656	5.90443154507204	6.29875820278288	0.719305721418009	0.00582762055765889	0.0531663937033584
Merged-chr4-132593092-4	chr4	132593010	132593210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29043.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	7.33511642072318	7.49510316325229	6.70199185645143	6.86208376232037	7.25233130199352	7.4323288129524	6.73063374804327	6.9457979175381	-0.0238625146150969	0.926989468165939	0.973231608398357
Merged-chr9-18292168-4	chr9	18292057	18292257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025844)	promoter-TSS (NM_025844)	-110.0	NM_025844	66917.0	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	7.85187567863174	8.21210536099569	8.2770180638582	8.04445504573063	8.43826659312565	8.37354587102213	8.46769626487834	8.04439847989277	0.303164266601206	0.0938845915061146	0.335232650049258
Merged-chr7-84150846-4	chr7	84150765	84150965	+	872.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133722, intron 1 of 2)	intron (NM_133722, intron 1 of 2)	1028.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	4.10670898659575	4.21789826582547	4.20159387543822	3.97476961894821	4.1072117855603	4.23323835441575	3.98930186988631	4.65164060339159	0.365178870401462	0.390642466308426	0.690614974650227
Merged-chr2-132145263-6	chr2	132145235	132145435	+	793.049988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355430)	promoter-TSS (NM_001355430)	-15.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	3.21233010462203	3.40853570868093	3.32222741597682	3.3595427252998	3.11851967757393	3.13596990054603	3.14321751213488	2.96118629392132	-0.943947608396484	0.0929052758228552	0.333552636168877
Merged-chr3-59342230-4	chr3	59342144	59342344	+	843.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162884, intron 1 of 6)	L1MA4A|LINE|L1	2012.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	4.52118925748666	4.77121328978846	4.7855366912154	4.56713574111522	4.45463940472468	4.69512474627645	4.54203802930921	4.24047658209979	-0.381599764714823	0.299554210294153	0.611816257004375
Merged-chr9-20699364-3	chr9	20699278	20699478	+	664.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357639, intron 1 of 5)	LTR33A_|LTR|ERVL	27625.0	NM_001357635	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	3.27664045664835	2.78306402793144	3.05328793248543	3.11608142563653	3.02394429530893	3.09979931363806	3.15761312243173	3.11138759630541	0.111544358207396	0.849626803011118	0.943176062710257
Merged-chr16-18090298-4	chr16	18090173	18090373	+	799.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1083.0	NM_011172	19125.0	Mm.28456	NM_011172	ENSMUSG00000003526	Prodh	Pro-1|Pro1|Ym24d07	proline dehydrogenase	protein-coding	4.26933484861376	3.9355266557628	3.90718929142076	4.13819148320056	3.91650930555298	4.0287404959248	4.03814057273161	4.00566952044529	-0.214317935680825	0.613133068848104	0.833119630742334
Merged-chr2-48537106-3	chr2	48536996	48537196	+	942.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-277013.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	4.26657352571792	4.46383440161583	4.30803532658914	4.12744845847036	3.59367379139278	3.82819355378366	4.36458333678775	3.70414872619308	-1.0287567518851	0.0325159505176975	0.176581432967055
Merged-chr8-126944961-3	chr8	126944928	126945128	+	825.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024214, intron 1 of 4)	intron (NM_024214, intron 1 of 4)	893.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	3.5052230197745	3.27955698253053	3.65520660314519	3.37587799594156	3.28487665979873	3.32066642830476	3.49159413443068	3.69851370361966	0.00423886365933466	0.993569369547485	0.997702270136287
Merged-chr4-141477814-4	chr4	141477702	141477902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019763, exon 12 of 16)	exon (NM_019763, exon 12 of 16)	33129.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	7.23133323395285	7.2432490789652	7.00003103479284	7.39380632400059	7.5829116748031	7.59601394278488	7.5098944593745	7.3649035382677	0.376716512650486	0.0442295043264395	0.214499685797618
Merged-chr1-171610215-3	chr1	171610111	171610311	+	824.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2801.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	3.25220790015523	3.34388739094349	3.31335081787269	2.88545957319096	3.58080295467301	3.30311770441718	3.30073063142191	3.75771521785475	1.06452719085455	0.0594037840574995	0.25685226250934
Merged-chr8-90877120-4	chr8	90877043	90877243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	48308.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	6.7646591362768	6.45791697623336	6.61684467293138	6.14425054571859	6.20920421135901	6.26488216723855	5.94203158587741	5.94403636609086	-0.602744344733368	0.0191611939070175	0.124305014683522
Merged-chr11-29515035-4	chr11	29514902	29515102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026465)	promoter-TSS (NM_026465)	31.0	NM_026465	67939.0	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	6.51813494260577	6.53653442509013	6.63261201650158	6.61293852963349	6.82028438072432	6.67877654895379	6.79796473674478	6.65850307104811	0.239432400270805	0.231231395522243	0.540724853688999
Merged-chr2-32547831-1	chr2	32547731	32547931	+	921.0	f0_balb.idr	intron (NM_153560, intron 1 of 10)	intron (NM_153560, intron 1 of 10)	12472.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	4.46555007170211	4.96649696112161	4.37744498597668	4.23413998874098	4.69558464614395	4.63963627369131	4.31274861986789	4.69879983117661	0.133580603707665	0.742132539591396	0.898417179766546
Merged-chr14-10134052-4	chr14	10133934	10134134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	249939.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	6.35531354521901	6.46309512921979	6.51527798846309	6.81403829490614	6.68831997362762	6.35334514532398	6.76172101825962	6.38893540135564	0.00300228184175271	0.98984664412863	0.995968409833926
Merged-chr9-21724321-4	chr9	21724166	21724366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252659, intron 1 of 17)	intron (NM_001252659, intron 1 of 17)	690.0	NM_010700	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	6.17186137739092	6.25636065621696	6.11091595809477	6.06018361563797	6.73445441630058	6.00682950579438	6.39485485370738	6.16853673300622	0.339084395029754	0.185831046730778	0.483735666883048
Merged-chr11-106994464-4	chr11	106994341	106994541	+	970.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010655, intron 3 of 10)	Lx8|LINE|L1	5084.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	4.88442943456547	4.91256525477338	4.70653446342054	4.71875913069586	5.68007737948635	5.89362155366976	5.60151237611818	5.78119890411091	1.6913917543821	4.10012667109943e-09	2.34600415049989e-07
Merged-chr3-104638568-4	chr3	104638435	104638635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009196)	promoter-TSS (NM_009196)	-129.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	5.61651139930482	5.95391826031548	5.78672947639276	5.53427017684474	5.25771177822538	5.47371381391697	5.42464539058665	5.61352165791765	-0.486838474935157	0.0851668307689997	0.317690075773987
Merged-chr4-83485906-4	chr4	83485859	83486059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355203, intron 1 of 10)	CpG-10005	504.0	NM_001290527	101739.0	Mm.105331	NM_133948	ENSMUSG00000028484	Psip1	AA408851|AU015605|Dfs70|Ledgfa|Ledgfb|Psip2	PC4 and SFRS1 interacting protein 1	protein-coding	5.70486055071973	5.6350820013734	5.65437940025492	5.62796367542902	5.75753072556725	5.69266012104428	5.79640292412032	5.97280794610619	0.256299403089213	0.308338885202609	0.620732910310164
Merged-chr2-76610878-4	chr2	76610778	76610978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37116.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	7.09589223671596	7.10061093540275	7.4430044016874	7.54398601290147	7.11865077777135	7.1477827991455	7.03714362652735	7.18513630079294	-0.271131655483803	0.179438743887008	0.475667183458399
Merged-chr4-74311306-3	chr4	74311200	74311400	+	801.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 5 of 20)	intron (NM_001356561, intron 5 of 20)	59421.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	3.65161649662219	3.96994059965329	3.82152435871675	4.01947241948319	3.91680521060817	3.77115329788552	4.41633510460116	3.65022047470779	0.256219001699508	0.601261763178721	0.827071740947179
Merged-chr2-32534520-4	chr2	32534442	32534642	+	908.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153560)	promoter-TSS (NM_153560)	-817.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	4.9036717656442	4.79104947682563	4.15395504183448	4.39023645423614	4.72649219774509	4.67415831722497	4.52088271197261	4.69639655573152	0.156049705339413	0.68922110977661	0.873230141915082
Merged-chr6-39241780-4	chr6	39241651	39241851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34978.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	5.91449331890147	5.52264301903755	5.93825650647306	6.47930879555176	5.97429101829075	5.66460006813407	5.79073984506157	6.33491230707822	-0.093687647588602	0.768091492489317	0.909266558474345
Merged-chr8-71511863-4	chr8	71511780	71511980	+	889.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032398)	promoter-TSS (NM_032398)	-111.0	NM_032398	84094.0	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	3.83579740684004	4.67819364004545	4.16444180217838	4.47254380140811	4.29672486635422	4.29061212582906	4.40599078402778	4.06140477320872	-0.157183706725124	0.724276987742905	0.890108631350396
Merged-chr3-101010810-4	chr3	101010710	101010910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167906, intron 6 of 8)	intron (NM_001167906, intron 6 of 8)	18685.0	NM_001167906	630146.0	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	5.67649940219231	5.47616488969983	5.57804861275323	5.68344232205553	5.13939530378515	5.39980135224965	5.47035106380981	5.52132078557858	-0.401868590020718	0.151299095073765	0.434790192912733
Merged-chr10-21601100-4	chr10	21601007	21601207	+	786.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	7962.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	3.94413155516895	3.94423696474898	3.35481469144057	3.73060778109149	3.86660868592757	3.74182903579224	3.92740893919015	4.37918007593601	0.658887382862321	0.191948875449811	0.491465072145399
Merged-chr11-119085627-6	chr11	119085552	119085752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007625, intron 2 of 4)	C-rich|Low_complexity|Low_complexity	585.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	5.32494824727174	5.98641884509587	5.18494709412796	5.26892130079108	5.81798907765889	6.14219944374173	5.56801447594553	5.96508952383396	0.669305848752517	0.035852177521906	0.188070023128583
Merged-chr7-41393399-4	chr7	41393320	41393520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183167)	promoter-TSS (NM_183167)	-41.0	NM_001199330	233168.0	Mm.379390	NM_183167	ENSMUSG00000056383	AI987944	-	expressed sequence AI987944	protein-coding	7.24768572092375	7.28316491596672	6.94179609149524	7.33638413166797	7.34039127514446	7.35904558518424	7.69336005715979	7.22189544269008	0.263850618442985	0.19121170306399	0.49061886061756
Merged-chr16-33885102-4	chr16	33884988	33885188	+	904.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010580, exon 5 of 15)	exon (NM_010580, exon 5 of 15)	55423.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	4.13064184036552	3.96708714696785	4.30519518435981	4.3385674793694	4.2016612099976	3.8123081243728	4.15867421607181	4.26120213831691	-0.193742259655618	0.64973198360273	0.852877323390663
Merged-chr5-129715505-4	chr5	129715403	129715603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356954)	promoter-TSS (NM_001356954)	6.0	NM_001356959	66258.0	Mm.249809	NM_025450	ENSMUSG00000034211	Mrps17	1810006P02Rik|Mprs17	mitochondrial ribosomal protein S17	protein-coding	7.08013127931087	7.1206725077201	6.80596515706931	6.95665486187542	7.31883590453545	6.99788312796364	7.04571031536177	6.88611001773996	0.118802989423784	0.561277219202877	0.804900484135968
Merged-chr19-44280952-1	chr19	44280852	44281052	+	793.799988	f0_balb.idr	Intergenic	Intergenic	-12724.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	3.77832285646457	3.86729755779859	3.68665778578766	3.78224692541447	3.15911240343532	3.2032418595005	3.08218054158749	3.35990279045365	-2.1318146333883	0.000155958038057188	0.00294767317867035
Merged-chr7-112183394-3	chr7	112183315	112183515	+	944.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23933.0	NM_001360257	50781.0	Mm.55143	NM_015814	ENSMUSG00000030772	Dkk3	AW061014|C87148|dkk-3|mDkk-3	dickkopf WNT signaling pathway inhibitor 3	protein-coding	4.00998611093577	3.7224241367806	3.47847179324181	4.01064783551518	4.05093087472051	3.72051529738956	3.75654822757947	3.87039163094748	0.0837899351504517	0.862826052799396	0.948353262475307
Merged-chr5-43916142-4	chr5	43916057	43916257	+	814.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47348.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	4.04736054491269	4.1371773472402	3.60835039139333	3.51887471695262	3.69238743513122	3.66685738699726	3.80616968183686	3.54709658138196	-0.497203566675211	0.326797225384559	0.638357246511911
Merged-chr14-67899010-4	chr14	67898918	67899118	+	956.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177780, intron 1 of 51)	intron (NM_177780, intron 1 of 51)	34554.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	4.43713972750166	3.96052154978221	4.35376967771967	4.52553537858845	4.46618804820189	4.18806368073009	4.29050437183327	4.6576749737495	0.164762491940006	0.689850325639851	0.873623035418265
Merged-chr1-86339603-3	chr1	86339492	86339692	+	720.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11693.0	NR_028478	100303740.0	Mm.154378	NR_028478	ENSMUSG00000064837	Snora75	MBI-55	small nucleolar RNA, H/ACA box 75	snoRNA	3.73458478777059	3.63223076125445	3.63381662080193	3.5848139827748	3.7915339590484	3.63924900830679	3.61930581277362	3.40210711173494	-0.0465494590602646	0.923030993633073	0.971488790221253
Merged-chr5-142401443-4	chr5	142401346	142401546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199068)	promoter-TSS (NM_199068)	-51.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	5.58716483478408	5.46151134825814	5.27310561776308	5.33309144502114	5.56023987596003	5.51190938365849	5.60924550043114	5.33280452126202	0.171146766327635	0.536616967546279	0.790559021690502
Merged-chr2-30985433-4	chr2	30985339	30985539	+	825.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028846, intron 1 of 24)	intron (NM_028846, intron 1 of 24)	3160.0	NM_028846	74270.0	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	3.75973168503998	3.81276491598642	3.54687544834577	3.55993300918004	3.63629839711032	3.66390435832176	3.34987641085335	3.9821655088925	0.0173441970565471	0.972419408788913	0.990070677988643
Merged-chr7-28593592-4	chr7	28593466	28593666	+	926.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027470, intron 1 of 9)	intron (NM_027470, intron 1 of 9)	4618.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	4.075845777699	4.53816796681612	4.07643190734226	4.056128464078	4.38432604952536	4.29928063285861	4.10829176152268	4.17089336619868	0.122723981325749	0.76846774370584	0.909356419531329
Merged-chr11-60537612-4	chr11	60537522	60537722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172943)	promoter-TSS (NM_172943)	-61.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	7.27541206047238	7.47311428503386	6.51781001383008	6.6940818777002	7.16709503676863	7.53189750910023	6.98212986724048	6.82419702713756	0.144012744757952	0.60408274592098	0.828350269166784
Merged-chr19-5414969-4	chr19	5414870	5415070	+	907.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027938, intron 1 of 3)	AT_rich|Low_complexity|Low_complexity	8155.0	NR_027938	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	4.666384444813	4.42687904403469	4.33913400833407	4.46866805057829	4.59202430617769	4.46885519882084	4.00942785880577	4.92353665869781	0.138228048326612	0.73809356143662	0.89663887511302
Merged-chr19-43786443-3	chr19	43786343	43786543	+	806.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013806, intron 2 of 31)	intron (NM_013806, intron 2 of 31)	4135.0	NM_013806	12780.0	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	3.11381309974412	3.20356431152308	3.69394870281611	2.96644605019663	3.59193370016339	3.61027189891863	3.76618097622945	3.48940602778219	1.19765072406038	0.0335690476881432	0.180395327707135
Merged-chr5-110808222-4	chr5	110808137	110808337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347394, intron 3 of 27)	intron (NM_001347394, intron 3 of 27)	1844.0	NM_009469	22241.0	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	7.35002793698468	7.38103317819911	6.81802328537649	7.12070152106979	7.47880327665694	7.65302941519313	7.49273071538057	7.36621828677702	0.421919349294413	0.0362377936446524	0.189269879206979
Merged-chr7-80370193-4	chr7	80370037	80370237	+	911.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172903, intron 2 of 23)	RSINE1|SINE|B4	1238.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	4.18039068110914	3.44817766014933	3.98382818052968	4.11174350061058	4.56483772309912	4.2124119600349	4.29130173946647	4.42666677092859	1.04141102031118	0.0263983126529258	0.154079991498369
Merged-chr4-94515507-2	chr4	94515407	94515607	+	817.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026368, intron 5 of 5)	intron (NM_026368, intron 5 of 5)	41289.0	NM_026368	67770.0	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	2.58227183739373	2.52387466963492	2.58249055858993	2.72322175837999	3.0011444991063	3.09233528916123	3.17589138451994	2.97872191191057	2.03394951125984	0.00284101376745888	0.0306441156166019
Merged-chr9-45405354-4	chr9	45405259	45405459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007503)	promoter-TSS (NM_007503)	-718.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	5.84571351253467	5.86768868713367	6.08371664630125	6.00099726722177	5.75937129618153	5.92429223812572	5.81705957352026	5.86605521229896	-0.18992440729859	0.435522884597779	0.724661571578343
Merged-chr12-32343684-3	chr12	32343595	32343795	+	921.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-35094.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	3.76686870193458	3.79205382890644	3.6035277668261	3.36314199724544	4.04466873046458	3.98813027922247	3.7516789311827	3.65844933226043	0.728553552262234	0.131026184601437	0.402938651772802
Merged-chr9-69987771-4	chr9	69987668	69987868	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1698.0	NM_016787	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	4.90201119045163	5.27860949887608	5.14292428518684	4.83163292091036	4.99162974204049	5.1152089029184	4.91642593687103	5.25841450731993	0.0622347372167934	0.848082037881753	0.942612651933043
Merged-chr7-68112795-4	chr7	68112722	68112922	+	970.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	151411.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	4.31796898695073	4.28064308996283	4.27601780909496	4.63910745213167	4.22912490508575	3.86963299922647	4.12132330086864	4.13639809635718	-0.744410517581081	0.0755494301510973	0.296888030073701
Merged-chr11-58301221-4	chr11	58301082	58301282	+	928.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5887.0	NM_182996	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	4.82586448198489	5.03120803840866	4.2706072474132	4.62198416460373	3.69920606771493	3.75723828951687	4.10568051474799	4.06825337452581	-2.03031615123582	1.09781623879267e-05	0.00029950732871224
Merged-chr9-21155010-4	chr9	21154901	21155101	+	824.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-5095.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	3.884674154329	3.86518750288668	3.77971239427209	4.06095558157319	4.26510005587637	4.10541757613221	3.46188549192402	3.93260116241901	0.199964262573243	0.684747676130138	0.870914954532591
Merged-chr2-73060034-4	chr2	73059940	73060140	+	897.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79594.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	4.48311047843661	4.38863019047988	3.85275574874412	4.20186657022803	4.35547362799145	4.44866800085284	4.11493443083672	4.59091622921572	0.325013558251108	0.438203761069994	0.726297851003868
Merged-chr17-51179401-4	chr17	51179306	51179506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285991)	promoter-TSS (NM_001285991)	-54.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	8.15122115899964	8.25460523665686	8.33517896710581	8.28632298316849	8.06847574835968	7.94460425547213	8.33266606518962	7.87353504437184	-0.244373286298575	0.15462602024078	0.439910687666113
Merged-chr18-44380394-4	chr18	44380282	44380482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027490)	promoter-TSS (NM_027490)	-118.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	8.87443531421691	9.21520635660722	9.14237677976274	9.04726758332503	8.97871640081866	8.92992643758704	9.06053625735402	8.93493410329465	-0.122976992413308	0.407048396426904	0.703457348417477
Merged-chr11-75510123-5	chr11	75510083	75510283	+	814.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029938)	promoter-TSS (NM_001029938)	89.0	NM_001029938	280408.0	Mm.41416	NM_001029938	ENSMUSG00000038195	Rilp	AI835553|Gm857	Rab interacting lysosomal protein	protein-coding	3.70636164818787	3.82267118529112	3.59573272905433	3.52834342030955	3.593227849842	3.97899101733925	3.84069360489694	3.80699832707693	0.432335654847579	0.355478861287194	0.662112517795661
Merged-chr8-104340326-4	chr8	104340242	104340442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024217)	promoter-TSS (NM_024217)	-252.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	7.12823455030614	6.95250611850207	7.66931741153971	7.7675568662823	7.40775224977805	7.06595338192362	7.80918811822996	7.54720855520601	0.0701674184361379	0.784190108801107	0.915967437099313
Merged-chr2-11777623-4	chr2	11777502	11777702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348237)	promoter-TSS (NM_001348237)	-17.0	NM_001348236	50755.0	Mm.24088	NM_015792	ENSMUSG00000058594	Fbxo18	AU015756|Fbh1|Fbx18	F-box protein 18	protein-coding	8.383500621984	8.52666944481925	8.26717959710697	8.39954998501488	8.47908801815194	8.47967035480045	8.77112019428864	8.35237523246478	0.16515044268494	0.317668116462623	0.629592752581639
Merged-chr12-111743521-4	chr12	111743421	111743621	+	857.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163388, intron 4 of 5)	L1MB3|LINE|L1	-15328.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	4.09253982314341	4.07870704978775	3.99978886530927	3.99639389279968	4.08082370859814	3.72535856036661	4.02988761088508	4.13480226034999	-0.0859435230080967	0.840160916957301	0.939232419857578
Merged-chr15-86161125-4	chr15	86161019	86161219	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 3 of 12)	L1M4|LINE|L1	-24609.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	5.70664528748033	5.13507148242703	5.41249891720357	5.92496967271312	5.84065995862876	5.2118712819962	5.67859228433476	5.57800733404075	0.0198511653625318	0.951549863176696	0.982792981377963
Merged-chr19-56535221-3	chr19	56535116	56535316	+	899.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153440, intron 8 of 9)	L1MB7|LINE|L1	12906.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	4.64793016716964	4.02673156085985	4.98080443994504	4.37859498171754	3.96310981357984	4.32485544117255	4.12780487289577	4.19319340773098	-0.943376348426372	0.0356667897485312	0.187538776525962
Merged-chr2-91083088-4	chr2	91082983	91083183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12768.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	7.37744220526918	7.50370361429482	7.60281554256214	7.70749854785297	7.75475624674428	7.1220654725912	7.69487867530419	7.35297672566756	-0.0581464361272603	0.781064466987346	0.914773964552732
Merged-chr2-25196000-4	chr2	25195907	25196107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146115, intron 1 of 1)	intron (NM_146115, intron 1 of 1)	806.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	7.84655519719028	7.82473537876397	7.71690156904965	7.47767705349825	7.75176611678124	7.92629762166537	7.8171578441899	7.54701065521953	0.0665189648072002	0.71893856203457	0.887684154524562
Merged-chr16-32877741-4	chr16	32877645	32877845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027226)	promoter-TSS (NM_027226)	-39.0	NM_001356387	69823.0	Mm.12831	NM_027226	ENSMUSG00000022800	Fyttd1	2010005M05Rik|3830411L18Rik|3830421F13Rik|4933423A17Rik|AI098218|AW539567|C85190	forty-two-three domain containing 1	protein-coding	6.9414143847597	7.07971650507939	7.04445710916031	6.80454089993182	7.16362938803549	7.20887593517552	7.17944765726498	7.09914699434184	0.277175577317372	0.141369839035745	0.418332242983507
Merged-chr15-6581089-4	chr15	6580960	6581160	+	864.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	1213.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	3.98903129864713	4.47984700815895	4.39378148756519	3.87585344329016	4.31467759744463	4.16599721134496	4.12088001140089	3.93362557144808	-0.139656713355588	0.754858228620045	0.903502242272986
Merged-chr19-32780500-4	chr19	32780426	32780626	+	932.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 2 of 8)	intron (NM_008960, intron 2 of 8)	22949.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	4.92344958520578	4.32601781744707	4.35221741512339	4.38844113985958	4.465580389168	4.57034391890317	4.0327936031153	4.39385990163933	-0.305432083705057	0.461999134252132	0.743525587973039
Merged-chr13-9281475-3	chr13	9281388	9281588	+	716.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	4963.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	3.49617575258252	3.41321505888718	3.38585452381908	3.59996335819593	3.34103088112582	3.66489116439655	3.48259413679111	3.13033972578042	-0.228089508743375	0.668186653946551	0.862850737330936
Merged-chr10-121256615-3	chr10	121256515	121256715	+	937.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53966.0	NR_152796	74647.0	Mm.370609	NR_152796	ENSMUSG00000112846	4930432O09Rik	-	RIKEN cDNA 4930432O09 gene	ncRNA	3.8389854721767	4.18807110521998	3.94084022013387	4.391590324197	4.13543114734438	3.78981250333201	3.59744669421453	3.54419554127858	-0.872935329416838	0.0870165991731414	0.321708480389135
Merged-chr17-30004813-4	chr17	30004725	30004925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148926)	promoter-TSS (NM_148926)	-214.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	7.10371588724353	7.4820175689741	7.72706727135796	7.03741724560902	7.19984858498791	7.57872995316351	7.23117898628921	7.61977983540402	0.0752315320491555	0.744520424990162	0.899296531468148
Merged-chr5-137850462-4	chr5	137850378	137850578	+	978.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7571.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	4.96375881364157	5.11618888222734	5.57774916786285	4.27983354967179	4.75382675975165	4.79248369219115	4.75730522106877	4.9263764334563	-0.493640731963527	0.23691344466089	0.54700150657517
Merged-chr9-35063230-4	chr9	35063100	35063300	+	770.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	MYSERV6-int|LTR|ERVK	-53528.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	3.29967540687014	3.29413381017249	3.03209768219468	3.45618141864166	3.6411499150447	3.6899911033425	3.34696909439046	3.46875395838218	0.856565913575686	0.118121644235673	0.380170508884494
Merged-chr8-105605113-4	chr8	105604933	105605133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081241)	promoter-TSS (NM_001081241)	-196.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	4.68559604897168	4.63845658247899	5.01331922444711	4.20680496548074	4.41334136480259	4.74330588769394	4.27853937368177	4.68323156505798	-0.252166605824006	0.539076836636034	0.791983989773924
Merged-chr6-91712963-4	chr6	91712860	91713060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	28893.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	8.68141107079801	8.81330572860973	8.48566557452493	8.74730996581552	8.58854486460784	8.67353873787594	8.75105225891957	8.55419753859075	-0.0604081378950879	0.695376456033567	0.876597491570085
Merged-chr7-98427357-4	chr7	98427262	98427462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-13054.0	NM_001130693	14918.0	Mm.389928	NM_001034890	ENSMUSG00000074003	Gucy2d	-	guanylate cyclase 2d	protein-coding	6.86700168815823	6.89935900833857	6.64161931533057	6.97720924411985	6.66981520812951	6.26639738851571	6.40714137841726	6.75522302400943	-0.447254578278504	0.0443501384582153	0.214748197640633
Merged-chr13-100195651-4	chr13	100195541	100195741	+	925.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 2 of 15)	intron (NM_001126182, intron 2 of 15)	6481.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	4.79671663123141	4.58493066397946	4.42437129736187	4.83189985230665	4.40985018783609	4.77890049258519	5.11533994505597	4.79429162683105	0.234998745167728	0.534206742398482	0.789066961676578
Merged-chr8-123034321-4	chr8	123034214	123034414	+	939.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	7970.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	5.17143117734936	5.08558503339119	5.33612199303838	4.83752022526734	4.7734425404713	4.77033070755806	4.69922396317082	4.79850988025634	-0.688065055097409	0.0416518501815847	0.206691644296975
Merged-chr2-180692798-4	chr2	180692704	180692904	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_111965)	promoter-TSS (NR_111965)	-756.0	NR_111965	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	5.78176645812995	5.03410436378988	5.88802416841169	5.87391464937098	5.108635669736	5.16646536798567	5.68575780816373	5.20478603746263	-0.659937403003806	0.0538779670881719	0.242276248234519
Merged-chr12-101740250-4	chr12	101740142	101740342	+	981.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21719.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	5.62607564988806	4.8717840698219	6.20499110944718	6.07343531757401	5.50638270176723	5.43538564158724	6.15565064051218	5.97583699719774	0.0173676935539859	0.963838943856988	0.9871662400506
Merged-chr3-27439344-4	chr3	27439257	27439457	+	990.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 24 of 26)	intron (NM_001356953, intron 24 of 26)	68006.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	5.26939189855023	4.81799128690095	5.56101356678197	5.55476073127667	5.1158679665937	5.07104041425064	5.1522456525434	4.96632288317951	-0.487564737381428	0.144598354832293	0.423763434560599
Merged-chr16-24625741-4	chr16	24625607	24625807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-96148.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	7.3885904349051	7.60674663228342	7.13583425407073	7.14909735914742	7.28369592673425	7.16409789050203	6.92459228462445	7.10714437766789	-0.271336055161736	0.190851334888931	0.490284569083293
Merged-chr15-84245976-4	chr15	84245872	84246072	+	729.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	L1MB8|LINE|L1	13929.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	3.65306995615566	3.9499406806792	3.59477988007462	3.64154798841468	4.00269231954908	3.88333295407293	3.84897161040163	3.95701739575495	0.610497981026682	0.174168351073642	0.468536831756677
Merged-chr12-69423016-4	chr12	69422875	69423075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50825.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	6.16762050567752	6.19636608191154	6.41378222609415	6.4462161769971	6.15392662228836	5.67872039097967	5.7585469308582	5.70304100030677	-0.718329476220084	0.0056807250200479	0.0522346371530797
Merged-chr13-81144694-4	chr13	81144609	81144809	+	778.487488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	180635.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	3.91701769565524	4.011707408578	4.23013330793114	3.89423540587565	3.87942443317334	3.75508230860299	3.99763409938242	4.05857817076984	-0.232703924457192	0.594860218487452	0.823614837620898
Merged-chr11-83789433-4	chr11	83789319	83789519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35782.0	NM_145432	217026.0	Mm.117874	NM_145432	ENSMUSG00000000976	Heatr6	2700008B19Rik|BB135312|BB249351	HEAT repeat containing 6	protein-coding	6.39302238002912	6.51654153622303	6.24321845725711	6.39207708958005	6.59720178813826	6.55224691263167	6.34365064464909	6.45872698703224	0.152174247315332	0.480523262042813	0.755988004087823
Merged-chr17-43060889-3	chr17	43060777	43060977	+	985.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	44322.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	4.77183214099678	4.01607782034298	4.94622538158535	5.08413965471876	3.94017802909112	3.64196101592048	3.71969601637479	3.8607365499962	-2.4754235326823	1.7138720917501e-06	5.70054680461123e-05
Merged-chr11-80476771-4	chr11	80476694	80476894	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009871)	promoter-TSS (NM_009871)	-229.0	NM_009871	12569.0	Mm.142275	NM_009871	ENSMUSG00000048895	Cdk5r1	Cdk5r|D11Bwg0379e|p25|p35	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	protein-coding	6.09984856785051	6.13620535006624	5.95528001032127	5.9541645975407	5.93916585714756	6.0855807919103	5.8339771112116	5.50712209568157	-0.278204655716807	0.279207713997427	0.591374334185052
Merged-chr19-32953529-4	chr19	32953430	32953630	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	195953.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	4.92065452645235	4.63808728527218	4.29607410247659	4.94779267140407	4.9630833154661	4.71620871326418	4.6448795486121	4.91812872622597	0.17063839042863	0.64654235262852	0.851366985708531
Merged-chr3-86884174-1	chr3	86884074	86884274	+	871.0	f0_balb.idr	intron (NM_001195500, intron 2 of 11)	intron (NM_001195500, intron 2 of 11)	36710.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	3.58935272982613	3.60027708444787	3.30425115337517	3.38196195165607	2.56121518963824	2.73546596039116	2.7819168834196	2.86398808056069	-4.27694225259974	6.53784693439289e-06	0.000188480116218368
Merged-chr13-13526081-4	chr13	13526001	13526201	+	860.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64308.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	3.93427647015703	3.83634567310701	3.9348257947209	3.82983612006403	4.72526257706957	4.1155266877864	4.65434595881034	4.27407197259103	1.49024663095264	0.000360995855735104	0.00590290007244865
Merged-chr1-172206728-4	chr1	172206631	172206831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329869)	promoter-TSS (NM_001329869)	73.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	5.88128521106097	6.10343106436462	5.59528432194436	5.40612545646065	6.27273579306208	5.96216836132405	6.00515585889799	6.18710956356379	0.568096780546489	0.0414980710144671	0.206313557081704
Merged-chr14-100934770-4	chr14	100934655	100934855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	265314.0	NM_029680	76627.0	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding	6.72741731911366	6.45060086270101	6.65575715108856	6.94704539906286	6.7826087168171	6.27919199216207	6.70830607421708	6.14059693894138	-0.286713560905702	0.257128278732264	0.568866246600685
Merged-chr2-146402942-2	chr2	146402852	146403052	+	970.833374	f0_balb.idr|f1_balb.idr	intron (NM_001033348, intron 21 of 40)	intron (NM_001033348, intron 21 of 40)	109052.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	3.45826843065851	3.81546013753613	4.18605376168049	4.38163815920861	2.99963065787411	3.15437816262599	3.10701886685178	3.26157960264127	-3.41341587187242	7.09721921866036e-07	2.55525021125455e-05
Merged-chr9-21969416-4	chr9	21969265	21969465	+	914.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-5789.0	NM_010149	13857.0	Mm.2653	NM_010149	ENSMUSG00000006235	Epor	-	erythropoietin receptor	protein-coding	3.92247875626838	4.17354267486782	4.43935637759314	3.81797675182782	3.98306731033021	4.09878373247154	3.85365660853361	4.16152718139052	-0.190406879929214	0.673109286057773	0.865589526337487
Merged-chr12-110606338-4	chr12	110606244	110606444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030238, intron 1 of 76)	Lx7|LINE|L1	4949.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	5.7526306569384	5.74866362551552	5.21830880170639	5.72801638121769	6.06029444638197	5.80169148478854	5.90401760692561	5.59477876406871	0.361136346627903	0.200244902054968	0.502259964838292
Merged-chr1-59764707-6	chr1	59764602	59764802	+	868.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007561, exon 1 of 13)	exon (NM_007561, exon 1 of 13)	423.0	NM_007561	12168.0	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	3.74265456032158	3.68769234751198	3.58122071928824	3.72000854962239	3.58054019209104	3.86209453982456	3.72773841546983	3.79070381966719	0.152696869519602	0.740468735315753	0.897915160840914
Merged-chr8-105304118-4	chr8	105304011	105304211	+	783.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148952, intron 7 of 9)	intron (NM_148952, intron 7 of 9)	-1490.0	NM_172760	234683.0	Mm.237966	NM_172760	ENSMUSG00000014791	Elmo3	9930107J06|BC058752|CED-12|Ced12	engulfment and cell motility 3	protein-coding	3.87098840876757	3.76710684782763	3.81929733571672	3.64143034359516	3.98802256990942	3.64055877306451	4.24429016490746	4.22404995948195	0.77290026876174	0.0898789317938855	0.327399682181301
Merged-chr6-13070582-4	chr6	13070470	13070670	+	862.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027992, intron 2 of 8)	intron (NM_027992, intron 2 of 8)	811.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	4.03400338011583	3.74158854345541	4.28835027284345	4.15547529276794	3.92355433647623	3.83720437370868	4.01715394973596	3.98451158319867	-0.351097380745249	0.427302859900006	0.718486966475066
Merged-chr10-78164113-4	chr10	78164025	78164225	+	884.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138601, intron 5 of 6)	intron (NM_138601, intron 5 of 6)	5643.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	4.21541022709421	4.30916667512466	4.21604049461582	4.28332499833112	4.42224354244195	4.0249837527313	4.24296507721645	4.5391977602304	0.165970963009442	0.675203659756504	0.866604873340231
Merged-chr12-78894321-4	chr12	78894226	78894426	+	939.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013738, intron 5 of 8)	intron (NM_013738, intron 5 of 8)	12612.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	5.07710127879077	4.51763129146303	5.01371669028251	5.24544859039306	4.77108558573809	4.76738997515244	4.95613187779744	5.07446595236195	-0.210797871203639	0.554827714854734	0.801072677247919
Merged-chr11-116274546-2	chr11	116274452	116274652	+	972.5	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146032)	promoter-TSS (NM_146032)	-335.0	NM_146032	217337.0	Mm.29655	NM_146032	ENSMUSG00000020780	Srp68	2610024I03Rik	signal recognition particle 68	protein-coding	3.90419794654257	3.53654171566332	3.40866311351201	3.64844986018575	3.44699568730851	3.46059892258621	3.3354404745126	3.67873811612463	-0.492750593088109	0.337425764960772	0.647131231452897
Merged-chr9-56950867-4	chr9	56950762	56950962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178374)	promoter-TSS (NM_178374)	-62.0	NM_178374	66069.0	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	8.10075369838086	8.38009925522976	7.87082854874918	8.0120552183679	8.16460280533172	8.04077819121122	8.28519380810139	8.38141617528707	0.152721790759403	0.40049452715322	0.698297047011029
Merged-chr5-149242646-1	chr5	149242546	149242746	+	698.0	f0_balb.idr	Intergenic	Intergenic	-22358.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	3.35105743505109	3.23274628029604	3.50620056831872	3.39927380659367	3.19399998507777	3.2848528750845	3.39176277014236	3.17339600529515	-0.421812826271068	0.427939106198628	0.719041213150412
Merged-chr1-152386624-4	chr1	152386528	152386728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025677)	promoter-TSS (NM_025677)	54.0	NM_025677	66637.0	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	5.49872496778182	5.49886081239429	5.15345193195584	5.4566297485812	5.5262649926125	5.70062121190351	5.67387582922125	5.46797671560843	0.304120484693772	0.270179143410331	0.582001672027478
Merged-chr3-90267286-4	chr3	90267189	90267389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201407, intron 1 of 27)	intron (NM_201407, intron 1 of 27)	775.0	NM_201407	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	5.04396655924147	5.2285696137858	5.21965129153115	5.18396092370033	5.48967795935275	5.7083161671889	5.34668794353787	5.53253339497584	0.620978510980184	0.0281860945752712	0.160809396102375
Merged-chr11-86996560-4	chr11	86996441	86996641	+	774.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2779.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	4.29746677550334	3.87598868012011	3.76432305115324	4.09967751930976	3.91202069938417	4.20710432868503	4.15432897434117	4.2550937134798	0.270015324277532	0.537628419701395	0.791181220764258
Merged-chr8-40580505-4	chr8	40580426	40580626	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040699, intron 7 of 13)	intron (NM_001040699, intron 7 of 13)	54266.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	5.63960599873344	5.32782837647753	5.87155874024968	6.04345349329264	5.49218955272819	5.25823438351033	5.50700380127135	5.47461339703141	-0.547154670640776	0.0686955371402093	0.279986236721425
Merged-chr12-44858309-4	chr12	44858202	44858402	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144552, intron 5 of 5)	intron (NM_144552, intron 5 of 5)	216181.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	4.79151505996404	4.80166140288576	5.22393110207941	5.51310432831696	5.05206974736691	5.09252626804155	5.60736052400223	5.15776009572081	0.197893788049348	0.58699181229252	0.819013564908904
Merged-chr3-89459165-4	chr3	89459053	89459253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026784)	promoter-TSS (NM_026784)	35.0	NM_026784	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	6.75754075251454	6.27011173066239	5.90351230476639	6.1751521301115	6.47295047233611	6.28727411819297	5.94579112404022	6.08467744250203	-0.134146400169955	0.631051703897296	0.843206856236261
Merged-chr9-3403846-7	chr9	3403758	3403958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027545)	promoter-TSS (NM_027545)	-227.0	NM_027545	244672.0	Mm.245482	NM_027545	ENSMUSG00000025898	Cwf19l2	3230401L03Rik|9030209E10	CWF19-like 2, cell cycle control (S. pombe)	protein-coding	6.78128397421256	6.80015827892623	6.91470998307995	6.80552962635864	6.48609784109961	6.71381314480787	6.55304376420661	6.64547257950853	-0.327311768026959	0.10192774291792	0.350454777951629
Merged-chr2-20962016-3	chr2	20961916	20962116	+	946.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128084, intron 1 of 24)	intron (NM_001128084, intron 1 of 24)	5705.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	4.17808504704259	4.5158020211463	4.03059072774021	4.4501002616168	4.4813146139058	3.9859421226517	4.33287179352934	3.80142636289711	-0.308576947281012	0.499733526313666	0.768477411297785
Merged-chr7-16048321-4	chr7	16048202	16048402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23543.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	8.14254293612911	8.29738858086095	7.56786835951914	7.64944053794093	8.01520267631348	7.94454940501441	7.79898129967948	7.6177015184005	-0.121860783528081	0.581155981562443	0.816124799976978
Merged-chr9-8004626-3	chr9	8004498	8004698	+	742.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171147)	promoter-TSS (NM_001171147)	-2.0	NM_001171147	22601.0	Mm.221992	NM_009534	ENSMUSG00000053110	Yap1	AI325207|Yap|Yap65|Yki|Yorkie	yes-associated protein 1	protein-coding	2.80608058244109	3.07707108295342	3.01317282991922	3.11190515573897	3.22715245838003	3.35900826757025	3.12339428718442	3.13348140033656	0.772422023106357	0.182214097187665	0.47878218634963
Merged-chr2-137969397-3	chr2	137969318	137969518	+	970.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-287166.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	3.27791435360784	3.11468183237497	3.4914640433164	3.53201274297529	3.07229760372438	3.26770907170154	3.26615416325759	3.33324140873836	-0.507989484435507	0.361739691504917	0.667036333297803
Merged-chr10-7140513-2	chr10	7140420	7140620	+	709.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172546, intron 5 of 12)	intron (NM_172546, intron 5 of 12)	71717.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	2.82021068428392	2.77006275635561	2.75993368627813	3.35198162437643	2.3475938797983	2.51000928639856	2.62132191291022	2.48404691425083	-2.69204780421336	0.0011800772967945	0.0153558906596957
Merged-chr7-140125620-4	chr7	140125503	140125703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346725)	promoter-TSS (NM_001346725)	-54.0	NM_001346725	212503.0	Mm.486735	NM_153783	ENSMUSG00000025464	Paox	2410012F02Rik|AI118225|Pao	polyamine oxidase (exo-N4-amino)	protein-coding	7.36676727138716	7.18689909733006	7.25621297411896	7.27878199932995	7.3398053465446	7.174675697634	7.23050474208087	6.85433292375571	-0.140778838023487	0.470031575638093	0.74885746888454
Merged-chr10-10462611-1	chr10	10462511	10462711	+	1000.0	f0_c57.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	9703.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	3.01821641080943	3.26116618861116	3.17367363134252	3.13687663103452	4.29946013564909	4.02725372056767	3.6993450638089	3.55628672949199	2.5324464458423	7.01212248914491e-06	0.000200770662371217
Merged-chr9-58542035-3	chr9	58541945	58542145	+	971.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1105.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	4.57318858687584	5.08463172638034	4.8962250280403	4.8728226316764	4.44110173641246	4.32786342265314	4.2846104700554	4.24937133940303	-1.2007158274141	0.00140581807475939	0.0177199795897465
Merged-chr11-69850133-3	chr11	69850036	69850236	+	952.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_031880)	TTS (NM_031880)	3492.0	NR_033133	70310.0	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	4.06332912617195	4.22201512121236	3.97587416313543	3.97141293186093	3.62714677365669	3.72744786356592	3.40400888222686	3.72258356022278	-1.29735409292196	0.00646304904482622	0.0573464682076396
Merged-chr11-109611744-4	chr11	109611644	109611844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145940)	promoter-TSS (NM_145940)	-355.0	NM_145940	52639.0	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding	8.89654252496285	8.93209490898551	8.73568892342336	8.80756016586824	8.97573166717676	9.10230883052925	9.14197891409598	8.94082344751467	0.244524619542742	0.0905829938368566	0.328704618172112
Merged-chr7-128049002-4	chr7	128048886	128049086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-13654.0	NM_001082960	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	5.42069560406118	5.16897698011943	5.64502042483793	5.56777928197078	4.87749618051278	4.89892348193727	5.25157695992711	5.30421149068758	-0.686179931388411	0.0302930771499739	0.168337179987352
Merged-chr14-20845513-3	chr14	20845392	20845592	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8830.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	3.35315984919387	3.6480996602648	3.67710774183074	3.28972534329734	3.42757648648993	3.74708089861891	3.45702572526936	3.22385004152265	-0.073514459361369	0.890796726156253	0.959156811349589
Merged-chr11-44540443-4	chr11	44540320	44540520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 3 of 5)	MTD|LTR|ERVL-MaLR	21043.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	5.21067263114485	5.23893893364944	4.88708682798804	5.38430697953348	5.1928433650823	5.38570453227055	5.46789824641096	5.30005054850282	0.226798256718676	0.457623249610735	0.740689110061175
Merged-chr1-38129937-4	chr1	38129833	38130033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359287)	promoter-TSS (NM_001359287)	-267.0	NM_001359288	56210.0	Mm.389103	NM_019570	ENSMUSG00000026082	Rev1	1110027I23Rik|AU022044|Rev1l	REV1, DNA directed polymerase	protein-coding	7.09053008090036	7.4437198323236	7.16163362925453	6.90318936789921	7.20882084184648	7.19493416897176	7.26439000499107	6.9069068148534	-0.00655247251189338	0.97521641943113	0.991193161400585
Merged-chr2-181864346-4	chr2	181864244	181864444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025901)	promoter-TSS (NM_025901)	-16.0	NM_025901	67005.0	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	8.54732473124252	8.51503634696487	8.47640950504423	8.71919185189946	8.31271440398034	8.22671505005911	8.46170320952016	8.35675279906222	-0.292674697540011	0.059514529818496	0.257143663830929
Merged-chr13-58618731-3	chr13	58618628	58618828	+	880.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7851.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	3.46514247025591	3.71908075404753	3.46557850870076	3.29885123894733	4.05503987037711	4.0509842252153	3.45295991857451	3.58128867845532	1.00007293848225	0.0534499351201361	0.241295930228716
Merged-chr10-60817040-4	chr10	60816943	60817143	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029770, intron 1 of 16)	intron (NM_029770, intron 1 of 16)	14538.0	NM_029770	107449.0	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	4.84847001885783	5.32224365512232	4.92686489350859	5.43048555307515	4.82925200143567	5.17511523255411	5.28718223338513	4.99673225560406	-0.186442076145505	0.586839324747901	0.818903628768642
Merged-chr10-80115649-4	chr10	80115535	80115735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011492)	promoter-TSS (NM_011492)	-168.0	NM_001301853	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	8.91703127104165	9.12589666598036	9.023504383926	8.85566579085073	9.04127242464332	9.24900389808561	9.11513344559078	8.87066057656818	0.115045881439104	0.461704641635617	0.74347158986905
Merged-chr1-60627613-4	chr1	60627505	60627705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60840.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	6.41696503210298	6.40539218745674	6.55857474948149	6.72724675415928	6.00705297433026	5.85714895963813	5.83763141355023	5.86330524451503	-0.985613030774679	2.95435392403384e-05	0.000717461473759142
Merged-chr5-110603431-4	chr5	110603236	110603436	+	992.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122639)	promoter-TSS (NM_001122639)	-169.0	NM_001122639	231605.0	Mm.275748	NM_198306	ENSMUSG00000033316	Galnt9	GalNAc-T9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding	4.58655263347074	4.24642687516896	4.43445053880212	4.36286005398774	4.20154742333444	4.29021515991667	4.24205054302919	4.47153481216118	-0.253615248717558	0.509664396152223	0.774132584192743
Merged-chr3-121580114-4	chr3	121579997	121580197	+	991.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47753.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	5.41180516809129	5.00554774620091	4.94587278796422	5.18542285998797	5.01203211792513	5.00673261859596	5.27766314616551	5.27181551100181	-0.0106805216277963	0.972896167767985	0.99024447070808
Merged-chr4-130807034-4	chr4	130806917	130807117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	14480.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	5.84335343086125	5.48208526774467	5.77609351101559	6.02755926214206	5.57830855651301	5.37389927964391	5.57245216329925	5.67482138130815	-0.423289540239353	0.129305069395243	0.400165458021043
Merged-chr2-166696815-4	chr2	166696694	166696894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	MTD|LTR|ERVL-MaLR	17038.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	6.85124424562229	6.83944951271109	6.65390298866233	6.0486889816854	6.96175215912287	6.70195187859219	6.95354270897604	6.39481523419638	0.218482077019674	0.418593207625058	0.711970738842506
Merged-chr4-97814687-3	chr4	97814561	97814761	+	884.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	37035.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	3.97260799393004	3.81492592668961	4.14823482228954	4.15804558261252	3.63750699433859	3.83318588385676	3.90874121211513	3.76813247882162	-0.720029292918229	0.11089564848392	0.367873264659147
Merged-chr2-18688974-4	chr2	18688911	18689111	+	887.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10011.0	NM_001001334	381350.0	Mm.330024	NM_001001334	ENSMUSG00000037708	Spag6	Spag6l	sperm associated antigen 6	protein-coding	3.77938794163694	4.05277667211376	3.94784587005861	4.04119741036145	4.35261631556403	4.39879908530797	4.07904636661025	4.09433254752997	0.702299090041668	0.0936529684480232	0.33476244870998
Merged-chr7-30423033-7	chr7	30422897	30423097	+	977.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172142)	promoter-TSS (NM_172142)	-278.0	NM_172142	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	5.01340328428088	5.17561221406931	4.58392243343059	4.41313740248172	5.1503680265989	5.37035302435621	4.73491776137926	4.97713459353308	0.499102463225656	0.190132597487155	0.489225613871894
Merged-chr16-25053739-3	chr16	25053630	25053830	+	885.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5909.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	3.36924628262341	3.6037588857351	3.11447521178013	3.24232405210505	3.65061561849021	3.42355085579045	3.56776832522541	3.36792561866939	0.574299400993369	0.279427111416786	0.591495502480744
Merged-chr4-117677076-2	chr4	117676976	117677176	+	778.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_023178, intron 4 of 10)	intron (NM_023178, intron 4 of 10)	5149.0	NM_023178	66233.0	Mm.29142	NM_023178	ENSMUSG00000009640	Dmap1	1500016M21Rik|DNMAP1|DNMTAP1|Dmtap1|mKIAA1425	DNA methyltransferase 1-associated protein 1	protein-coding	3.19946979635999	3.48418327450052	3.13335921844448	2.96956925080517	3.40466772152926	3.49773132966256	3.62073355765925	3.5390016115822	1.11088382608593	0.0404497363209111	0.203222473744177
Merged-chr15-80255134-4	chr15	80255043	80255243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287180)	promoter-TSS (NM_001287180)	-41.0	NM_001287180	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	7.68315107761928	7.79110596705952	7.38018525125189	7.72880239187039	7.98258704383537	8.00527265905203	8.01585699438026	7.88849256987363	0.40639197365848	0.0187081875943846	0.122448743428111
Merged-chr7-141568509-4	chr7	141568405	141568605	+	854.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 1 of 21)	intron (NM_001357068, intron 1 of 21)	6325.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	3.69250013994062	3.50913021748599	3.69302279378579	3.85870443948907	3.59409756598623	3.58812336026273	3.40307756758156	3.78725558677347	-0.326751969938238	0.506927888527059	0.772597481478011
Merged-chr11-86908046-4	chr11	86907964	86908164	+	992.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	85698.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	5.13631735797968	4.87364583994136	4.90889061385851	4.63143591743296	4.99783087213363	4.89335537071561	4.84942595374293	5.10348170164567	0.170540328200642	0.609733847512624	0.831199401158713
Merged-chr2-76115905-2	chr2	76115805	76116005	+	924.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081033, intron 9 of 19)	intron (NM_001081033, intron 9 of 19)	-133938.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	3.17761403588229	3.22373834342588	3.17799981893361	3.22982738663408	3.63364105095606	3.16003488923893	3.33437698614849	2.98147957339146	0.392551220947545	0.496737221509511	0.766669384835108
Merged-chr7-101378573-2	chr7	101378473	101378673	+	965.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	451.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	2.84999830205509	2.93873463752378	2.85038236184887	2.40706917605281	2.77689942399068	2.69392789013903	2.65032046396294	2.78808093249923	-0.20687589013869	0.764153483673617	0.907541434842314
Merged-chr2-109917577-4	chr2	109917475	109917675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172671)	promoter-TSS (NM_172671)	-72.0	NM_172671	107515.0	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	8.40826985549839	8.20543390575294	8.39415607373808	8.77827945952179	8.33804897687171	7.84744575346212	8.48747956511842	7.98140779434644	-0.350256655105433	0.0955524424742641	0.338453622470034
Merged-chr16-93034158-4	chr16	93034069	93034269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-208095.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	6.00282603901223	5.68062053082611	5.68154547178514	5.90097069403516	5.79253616948289	5.501349914249	5.88970461814129	5.91569649119309	-0.0654939690170883	0.803180802331795	0.924024146497742
Merged-chr4-145200249-4	chr4	145200193	145200393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5288.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	5.56364977708024	5.98942167399635	6.27092063258548	6.23185952555861	5.97909510435222	5.80327416153526	6.07196436642486	6.05835436032971	-0.110663315426309	0.681886441568478	0.869647747559641
Merged-chr17-34250747-3	chr17	34250657	34250857	+	876.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11852.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	4.34684492480334	4.04796311749227	3.83660630823448	4.04039355355438	3.32339660069306	3.19156519946763	3.43183735215124	3.37578678373143	-2.51381591680093	7.36021502929731e-06	0.000209640954609985
Merged-chr7-126862450-4	chr7	126862376	126862576	+	913.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172746, exon 1 of 7)	exon (NM_172746, exon 1 of 7)	504.0	NM_172746	233876.0	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding	4.28039614911962	4.26586821002701	4.57140983906076	4.18366024427883	4.67716753800874	4.40893722597607	4.35133599178318	4.3682175077601	0.343198016164639	0.373785622835309	0.677216414469042
Merged-chr8-85492497-4	chr8	85492441	85492641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173866)	promoter-TSS (NM_173866)	-76.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	6.29220022735215	6.73085615063281	6.52937002692012	6.60837086759841	6.43396409946144	6.72200613676025	6.76233707985051	6.60487676878951	0.10462968993541	0.636143065218206	0.846055181135049
Merged-chr13-95844478-4	chr13	95844379	95844579	+	985.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	47443.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	5.50349589646667	5.53045280150167	5.19192692878181	5.54642323148312	6.45054143464119	6.34065798480077	6.20574823904876	6.08624315667079	1.30609628963289	4.44708512104667e-07	1.6659951148999e-05
Merged-chr5-90700367-4	chr5	90700247	90700447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58951.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	7.24097930626872	7.02373566231459	7.46590118967004	7.51701249985279	7.04147660043638	6.93206040656391	7.09506547929506	6.96469595400163	-0.439474767967773	0.0299837391449502	0.167218723544497
Merged-chr1-157140620-2	chr1	157140519	157140719	+	921.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177644, exon 18 of 18)	3' UTR (NM_177644, exon 18 of 18)	-31939.0	NM_001305063	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	2.70642727243952	3.13807753127768	2.82807388748665	2.44055385632223	2.42749760129689	2.60823128716036	2.34011556428236	2.64037035973717	-1.53116360690064	0.0477997038721354	0.22552930676884
Merged-chr4-63558681-4	chr4	63558564	63558764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356354)	promoter-TSS (NM_001356354)	-99.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	7.17766089516276	7.15507247780141	7.59258428918113	7.4279147477588	7.16517788958432	7.30962209829168	7.0237917320463	7.1508670218967	-0.255135149931803	0.196765525277462	0.4979362662321
Merged-chr8-24987659-7	chr8	24987553	24987753	+	923.334534	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270996, intron 11 of 21)	Lx4A|LINE|L1	29269.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	4.12690679611227	3.60936225080163	3.9973000880104	3.8546794295449	3.58029928804294	4.02495814660941	3.73068855681847	4.03967430551088	-0.152453574291927	0.749750618556043	0.901461136456091
Merged-chr9-72797252-4	chr9	72797146	72797346	+	990.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10028.0	NM_175485	235472.0	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	5.02860860946693	4.77218570648489	5.36290358786264	5.32204692861832	4.88217264494129	5.16942358692742	5.30911817197434	4.87943516115071	-0.157194626645564	0.644135590656126	0.850082962136934
Merged-chr14-54409419-4	chr14	54409316	54409516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253680)	promoter-TSS (NM_001253680)	56.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	6.42693460380813	6.49950632523446	6.92970151395201	6.78283974955018	6.25461431136215	6.20725958331477	6.08736511720447	5.87459630455942	-0.832899548397476	0.000595129152165424	0.00887922984929475
Merged-chr11-68458322-4	chr11	68458401	68458601	+	999.392822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	26376.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	4.69039781229641	4.19339946031374	4.93818870300865	3.68054873479287	4.21106399431271	4.75660041612737	4.07606838310604	4.14390044345345	-0.317569244940894	0.536149284195985	0.790213033830861
Merged-chr1-172207386-4	chr1	172207268	172207468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329869)	promoter-TSS (NM_001329869)	-564.0	NM_011063	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	7.60660336405412	7.85960564801765	7.46025650778924	7.49393975379497	7.80598473557006	7.6571210384149	7.60481178800395	7.61134809977513	0.0840195344633474	0.645011561105436	0.850602647668807
Merged-chr11-116368305-3	chr11	116368211	116368411	+	860.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 2 of 18)	intron (NM_027258, intron 2 of 18)	-32957.0	NM_008240	15223.0	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	3.67538089119014	3.57338389039215	3.13109896698919	3.27940218195095	3.71429898171333	3.45324548650518	3.70809099375811	3.81402866698846	0.814573557098629	0.120195493281186	0.383804899567609
Merged-chr13-102689865-4	chr13	102689749	102689949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3698.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	6.52233940891995	6.70874184594393	7.00368570863082	7.15272039269442	6.70783384267553	6.63061755840022	6.4729311740905	6.60198316164287	-0.391155100343797	0.0905962161124553	0.328722438021535
Merged-chr8-18568760-4	chr8	18568657	18568857	+	865.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26374.0	NM_173189	244329.0	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge	microcephaly, primary autosomal recessive 1	protein-coding	4.42231772905477	4.63682672567238	5.1296225410641	5.39302984619594	4.1175103538811	4.35149383922538	4.61748364512605	4.42023633830811	-1.25861408287903	0.00332599102985801	0.0346162765776083
Merged-chr6-82835808-3	chr6	82835710	82835910	+	914.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	46043.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	4.04764908561822	4.2931651496791	4.04824718158337	4.02648655161153	3.83756926866736	3.89924505005801	4.54096143498233	4.04582821161279	0.00702707446657958	0.98757967067674	0.995315979319888
Merged-chr8-117258073-4	chr8	117257977	117258177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	(T)n|Simple_repeat|Simple_repeat	1058.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	7.56053456893272	7.62502658461956	7.75144718789006	7.53969073160147	7.61376718665317	7.66572168739713	7.32278798106767	7.39536808566974	-0.142784971656413	0.428296929959739	0.719325810566156
Merged-chr19-23246755-4	chr19	23246660	23246860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252684, intron 8 of 24)	L2|LINE|L2	25839.0	NM_001252685	226026.0	Mm.23267	NM_153808	ENSMUSG00000024943	Smc5	MLZ-453|SMC-5|Smc5l1|mKIAA0594|mSMC5	structural maintenance of chromosomes 5	protein-coding	7.11843633649163	7.25050866529793	7.59713754789056	7.58225017932454	7.68319750364169	7.44830607017692	7.38861046506115	7.34028973245736	0.0893023089400887	0.660611257465739	0.858992355066736
Merged-chr11-106305535-3	chr11	106305437	106305637	+	727.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3641.0	NM_008117	14599.0	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	4.11776715812816	4.21884692862586	4.01870770407349	3.51185142597688	4.12241705449463	4.69395147501214	4.31789433392861	4.0163097383332	0.818365296002104	0.0842167307852873	0.315697423665787
Merged-chr16-95709414-2	chr16	95709314	95709514	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011809, intron 2 of 9)	intron (NM_011809, intron 2 of 9)	7007.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	4.53325313263342	4.34140318258172	4.573873687133	4.58171747445594	4.42894036562896	4.39278278028672	4.4723309837665	4.85090038517479	0.0730542823505964	0.844369190457792	0.940965596937549
Merged-chr15-89175636-4	chr15	89175540	89175740	+	987.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	-1689.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	6.07079585516236	6.34341458896894	5.78341113727036	5.35173377298311	6.11159345546416	6.34118465837768	5.65074078956259	5.22948224728676	-0.0502209948531405	0.889617432969701	0.95860823232862
Merged-chr5-145167112-4	chr5	145166999	145167199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133735)	promoter-TSS (NM_133735)	5.0	NM_133735	71799.0	Mm.277413	NM_133735	ENSMUSG00000029624	Ptcd1	1110069M14Rik	pentatricopeptide repeat domain 1	protein-coding	7.57823649990617	7.97001054019955	7.4364878430587	7.60737733325706	7.77087415221972	7.86888925503203	7.3895950978301	7.99157487594357	0.141910027560026	0.495675132592927	0.765874409085869
Merged-chr13-21975018-4	chr13	21974912	21975112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6169.0	NM_001162928	195236.0	Mm.204664	NM_001162928	ENSMUSG00000016982	Pom121l2	Gm24	POM121 membrane glycoprotein-like 2 (rat)	protein-coding	5.06223742285471	4.80297405974198	4.68241841100071	4.74186593223614	4.81459429726159	4.49542120017179	4.6201549941092	5.05958615139008	-0.113940035658538	0.748415914404049	0.900999421474581
Merged-chr2-83742969-1	chr2	83742869	83743069	+	788.333313	f0_balb.idr	intron (NM_008402, intron 2 of 29)	intron (NM_008402, intron 2 of 29)	18572.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	3.6403276677262	3.69076009496842	3.93400491408981	3.78865647613158	3.67002737931694	3.64180045274416	3.77976525193058	3.58287693774734	-0.297383495880008	0.522585676893344	0.781990067507927
Merged-chr15-103324155-4	chr15	103324062	103324262	+	973.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356627, intron 2 of 7)	intron (NM_001356627, intron 2 of 7)	10176.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	5.03883765868591	4.78057026314588	4.94426491093884	4.45762257027328	4.80264595189009	4.69493703864684	4.81774852447932	4.83772384530383	-0.0264226972648227	0.9408612317415	0.978676631829834
Merged-chr3-59220666-3	chr3	59220592	59220792	+	680.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357010, intron 1 of 3)	intron (NM_001357010, intron 1 of 3)	-9810.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	3.16760370430492	3.16671220779148	3.22671119262966	3.28694660119349	3.44123648307457	3.0812583130509	3.1569552347154	3.28108989268172	0.143704060663468	0.793696615802688	0.920181308188282
Merged-chr10-128232187-4	chr10	128232095	128232295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008600)	TTS (NM_008600)	132.0	NM_001136082	21853.0	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	6.20570728944508	6.09576463829308	6.36751511914512	5.8591280687875	5.75834456615387	6.34351202248133	5.80299625816122	6.49014593783866	-0.00489011770027072	0.986433056124918	0.995010290574724
Merged-chr1-172501861-4	chr1	172501762	172501962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178598, intron 1 of 4)	intron (NM_178598, intron 1 of 4)	1616.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	6.37197181618354	6.43548877818693	6.13804052738071	5.82826826793589	6.57240725133348	6.84827397162695	6.44279505853647	6.3685297740686	0.54896592942279	0.0313169062741442	0.172318032752575
Merged-chr11-54921103-4	chr11	54921049	54921249	+	710.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271456, intron 12 of 18)	intron (NM_001271456, intron 12 of 18)	18295.0	NM_008161	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	3.65110526190338	3.6064199413135	4.01970657034282	3.59879130523153	3.51229396719498	3.59729346572213	3.40694973650543	3.84671124973278	-0.389581591699545	0.438138131220555	0.726291577403942
Merged-chr1-127981228-4	chr1	127981104	127981304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 12 of 20)	intron (NM_001285945, intron 12 of 20)	112431.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	7.33541338741248	7.20465256510412	7.82313930726701	7.67779299448317	7.42460707872575	7.26031713560496	7.55435893745294	7.48872893958251	-0.134598777657934	0.517407913085268	0.778863864766761
Merged-chr1-183637142-1	chr1	183637042	183637242	+	566.0	f0_c57.idr	Intergenic	Intergenic	-111835.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	2.77198523841969	2.87649045345341	2.69615678085754	2.49779242681974	3.28167939169801	3.32853938867275	3.24940303751248	3.15552482938065	2.49148187888981	6.40079357283461e-05	0.0013937047590113
Merged-chr12-101718196-2	chr12	101718096	101718296	+	960.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082976, intron 1 of 11)	CpG	327.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	3.30504608538903	3.08838928305382	3.4689895864339	3.1499185853823	3.32826297433868	3.35837853128411	3.29316125385729	3.65311771682137	0.58855029920991	0.275128741241041	0.586927419764657
Merged-chr1-155812894-4	chr1	155812789	155812989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023268)	promoter-TSS (NM_023268)	10.0	NM_023268	104009.0	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo	quiescin Q6 sulfhydryl oxidase 1	protein-coding	7.40221046800382	7.1921813943262	7.04615573793628	6.89457240830071	6.5454277116922	6.55481416996801	6.91256397476416	6.68868130180146	-0.640263397800591	0.00365786871066306	0.0373227403893759
Merged-chr18-10726973-3	chr18	10726872	10727072	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144860, intron 1 of 20)	intron (NM_144860, intron 1 of 20)	1347.0	NM_144860	225164.0	Mm.21500	NM_144860	ENSMUSG00000024294	Mib1	DIP-1|E430019M12Rik|Mib|mKIAA1323	mindbomb E3 ubiquitin protein ligase 1	protein-coding	3.2159674106557	3.35288964777452	3.91706427272112	3.45265484549897	3.45195244606071	3.70521410253013	3.62413922097713	3.78352668265065	0.428161708348743	0.421459113668564	0.714001052191097
Merged-chr4-40156296-4	chr4	40156212	40156412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 1 of 20)	intron (NM_007386, intron 1 of 20)	13047.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	5.951517748746	6.3419118759612	5.66241735262791	6.07717233375251	6.34756067431932	6.19850589024239	6.59634242434332	6.20397420970775	0.469900172895814	0.0698323479823939	0.282826368414601
Merged-chr10-116580638-2	chr10	116580538	116580738	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359248)	promoter-TSS (NM_001359248)	-102.0	NM_001359248	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	4.00851625335554	3.80735077730787	4.00910673791524	3.81208399384704	4.09012824090141	4.132885636788	4.08515105143686	4.30929611334979	0.674887798805018	0.103450986357909	0.353438502350466
Merged-chr4-3624147-4	chr4	3624042	3624242	+	913.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32364.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	3.47186690061295	3.83007008479375	3.78544571105471	3.77860704932214	4.22313563875706	3.9633803055911	4.56601609550718	3.83808287349176	1.21461359908158	0.0109563599389934	0.0842542624161684
Merged-chr13-20207259-4	chr13	20207151	20207351	+	714.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 2 of 21)	intron (NM_080288, intron 2 of 21)	116744.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	4.03721107841576	4.08902624734101	4.03778659271411	4.40725228978409	4.13669600556898	4.25869380358759	4.16162251710304	4.08453224086883	-0.0319874302251974	0.938939916913312	0.977881364615113
Merged-chr5-149246197-4	chr5	149246080	149246280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18824.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	7.53986413383573	7.32931458373936	7.63678717155548	7.77456934530315	7.47665023843049	7.25455057626848	7.69568069516918	7.68077323708358	-0.0627823055076266	0.75098853822544	0.901928782667397
Merged-chr2-129490085-4	chr2	129489970	129490170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	46532.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	6.78616786272108	7.13142802773637	6.66894446712042	6.30995616420757	7.08140748266112	7.10988136580113	6.43436192371226	6.66418321389091	0.149516597192473	0.578833985833566	0.814986435843799
Merged-chr19-60811628-4	chr19	60811548	60811748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347464)	promoter-TSS (NM_001347464)	93.0	NM_001347464	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	7.20025099575622	7.19477717281045	7.93685530161178	7.28249729401649	6.93062081618601	7.06524064611009	7.02461224996864	7.04274979712033	-0.576263409075808	0.0123249557698525	0.0915643488928436
Merged-chr4-132960929-2	chr4	132960829	132961029	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13166.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	2.59581852105206	2.50730900608858	2.71478861317335	2.34448425387439	2.45229476377494	2.34364309273916	2.457818807647	2.65537080898221	-0.319501533536046	0.656040017592874	0.856430271691361
Merged-chr18-37655729-4	chr18	37655629	37655829	+	970.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301259, intron 1 of 3)	intron (NM_001301259, intron 1 of 3)	-6216.0	NM_033584	93709.0	Mm.247203	NM_033584	ENSMUSG00000103144	Pcdhga1	-	protocadherin gamma subfamily A, 1	protein-coding	4.93597838368308	4.41494719416374	5.14063393192938	4.79880062337585	4.2508730015458	4.36860885524657	4.55112772704951	4.83472170855925	-0.70600247428619	0.0762154796170306	0.298247866332052
Merged-chr16-11006230-4	chr16	11006131	11006331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2667.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	8.3298668022975	8.36131096775876	8.96539816671551	8.81799261636504	8.07729641251023	8.03598517846007	8.33039431073685	8.36936578064746	-0.557107436183391	0.00591427215442533	0.0537022550937416
Merged-chr8-88244499-4	chr8	88244400	88244600	+	775.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164499, intron 3 of 11)	intron (NM_001164499, intron 3 of 11)	-27903.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	3.71455454110245	3.52738482370307	3.6088100885548	3.47541943687361	3.74690046421895	3.83405877063394	3.74906076356124	3.71293240272237	0.575340840310637	0.211364846746388	0.515972920864297
Merged-chr11-75573341-4	chr11	75573241	75573441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173388, exon 14 of 14)	3' UTR (NM_173388, exon 14 of 14)	-14738.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	7.18510832034137	7.08446240129761	7.28190696375377	7.15859481252409	6.75693892507861	6.90320921412729	7.29544481114459	7.25622251636101	-0.151441759583363	0.470525870855451	0.749241586333353
Merged-chr4-126114203-4	chr4	126114110	126114310	+	851.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	10253.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	4.09769824625988	4.29467932037848	3.81190633926127	3.75010143054795	4.19317436100345	4.70425168552828	4.7744031740861	4.41499427496078	1.30130153847409	0.00278422843460637	0.0301366477717224
Merged-chr9-94668871-4	chr9	94668777	94668977	+	993.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1015.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	5.3935838310889	5.22177547828014	5.2760634037787	5.71050948177752	5.19054978834208	5.45039586876478	5.31016818421014	5.07140272369062	-0.316362983666509	0.305472694025725	0.617899566472771
Merged-chr4-70621526-4	chr4	70621407	70621607	+	854.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86579.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	4.35463278115109	4.01169580874434	4.22275425967261	4.59838723659462	4.30607143996145	4.39555000071209	4.05846421494127	4.39377464120039	-0.0873176124139993	0.83485639940751	0.937113537712534
Merged-chr11-79673898-4	chr11	79673803	79674003	+	747.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045898, intron 2 of 2)	intron (NR_045898, intron 2 of 2)	1183.0	NR_045898	72218.0	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	3.96195208131664	4.27845437904522	4.11298608003989	3.59920782588469	4.37043484853827	4.13968673211573	4.42316826819117	4.06228246941722	0.667564541059695	0.138803211706638	0.414381792154761
Merged-chr5-115273989-3	chr5	115273861	115274061	+	833.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-1066.0	NM_001302449	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	3.46824706415867	3.28242550332443	3.42009679308485	3.24714953669082	2.88252718102231	3.19210319185483	3.13265050950394	2.94398427308001	-1.27353476962059	0.0304674189850631	0.16894626968434
Merged-chr1-74748938-4	chr1	74748831	74749031	+	754.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153744)	promoter-TSS (NM_153744)	24.0	NM_153744	241113.0	Mm.166501	NM_153744	ENSMUSG00000006542	Prkag3	AMPKg3L|AMPKg3S|Amkg3|Ampkg3	protein kinase, AMP-activated, gamma 3 non-catalytic subunit	protein-coding	4.30689901598639	4.00885511720027	4.3466795593239	3.8104429658027	4.2097129917859	3.8947008549334	4.1635956924606	3.93977563567442	-0.148562294860056	0.740724485381712	0.898040260084917
Merged-chr15-39778292-4	chr15	39778187	39778387	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022722, intron 9 of 9)	intron (NM_022722, intron 9 of 9)	-18758.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	4.4046643218285	4.34140521233157	4.44904638484214	4.61995846966796	4.49133013141053	4.66301555657757	4.69649086885062	4.48855015697564	0.252165994504527	0.489087482489124	0.761571656414145
Merged-chr19-3955266-3	chr19	3955164	3955364	+	729.8222049999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3544.0	NM_028545	73458.0	Mm.482922	NM_028545	ENSMUSG00000037263	Aldh3b3	1700055N04Rik	aldehyde dehydrogenase 3 family, member B3	protein-coding	3.42571575337768	3.37305543047939	3.02356530233834	3.11546956425769	3.04587114285292	3.19987781638132	3.25594149428195	3.20995676662216	-0.243878541027972	0.66568696209371	0.861582866462235
Merged-chr9-48493936-3	chr9	48493842	48494042	+	903.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144948, intron 2 of 4)	ID_B1|SINE|B4	1388.0	NM_001326355	67010.0	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	3.41065791993518	3.38222693350252	3.3531037588526	2.99925139694433	3.93223939563955	3.34359094353768	3.08307630891993	3.66531567353156	0.87285606690418	0.139595937107975	0.415449228891941
Merged-chr6-120453383-4	chr6	120453290	120453490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9807.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	6.87853878842933	6.77335996929353	7.39122107857827	7.37747292681698	6.95222383560435	6.84928851091293	6.66895504233606	7.01745980373948	-0.36377462596055	0.118249609454283	0.380389973848529
Merged-chr11-119087498-4	chr11	119087406	119087606	+	883.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1269.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	3.68548622735966	3.49797970819158	3.78487613867742	3.33621580962485	3.66853644553969	3.57876677573811	3.5649063104251	3.91744337718124	0.365272806251718	0.463121337405145	0.744590569099224
Merged-chr2-38433920-3	chr2	38433820	38434020	+	837.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-77777.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	2.95779554724715	2.90532831518175	2.89894750693609	2.87744464235587	2.81264891771854	2.8768807004193	2.88868309607479	2.8355095750573	-0.253619074031361	0.670946063479643	0.86442506506053
Merged-chr13-47230524-4	chr13	47230395	47230595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 4 of 7)	intron (NM_146042, intron 4 of 7)	36492.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	4.97796606397101	5.04855835568058	4.80270015677579	5.04030768054854	4.81606214446685	4.48778227163187	4.85281445437117	4.87284859423238	-0.41843044710058	0.210160273912847	0.514589641224702
Merged-chr9-118776762-2	chr9	118776662	118776862	+	877.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 2 of 13)	ORR1C2|LTR|ERVL-MaLR	65070.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.04444219604484	2.83372406582466	3.10776445858559	3.39673135926202	2.89093960500063	3.21915675028562	3.26677751512783	3.42998401129309	0.349366997124127	0.579635714463576	0.815450951857779
Merged-chr1-37496199-4	chr1	37496098	37496298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290801, intron 2 of 14)	intron (NM_001290801, intron 2 of 14)	-7593.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	6.27101562745799	5.72333133383287	5.64591123316836	5.78640491643213	6.10935294837371	6.14007601626653	5.72388891584123	5.87122258751369	0.162544425945381	0.555886016105535	0.801730133825154
Merged-chr12-79089570-4	chr12	79089441	79089641	+	937.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029988, exon 1 of 4)	exon (NM_029988, exon 1 of 4)	129.0	NM_029988	110417.0	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	4.34388746445668	4.46674317434738	5.20452276530504	4.25723133537928	4.24761724974032	4.52291167204097	4.27764093343596	4.67323321385423	-0.400602416164704	0.36399398717047	0.668957604255278
Merged-chr8-56328399-4	chr8	56328301	56328501	+	965.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33849.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	5.92791593652252	5.02340652583476	5.86241760792643	6.28223313940344	5.1946303570671	5.44751184888979	6.09656961546318	6.24656334459091	-0.0373782664409799	0.948075034181586	0.981359015857754
Merged-chr13-74808314-1	chr13	74808214	74808414	+	1000.0	f1_balb.idr	promoter-TSS (NM_009817)	promoter-TSS (NM_009817)	-354.0	NM_009817	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	4.46648952116584	4.24014232189845	4.98073224448242	4.64273470923702	4.5042925627542	5.08810044802535	4.44709698278148	4.67206817507518	0.187601226502388	0.642596442170749	0.849305954085447
Merged-chr10-94521103-2	chr10	94521003	94521203	+	988.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	6246.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	2.86097298035764	2.83767500960581	3.10736998211131	2.86821754189544	3.06048041902618	3.09964327123099	2.97945334921215	3.16036075826371	0.661188702755285	0.253105460849508	0.56440456133481
Merged-chr10-60262581-4	chr10	60262464	60262664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15064.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	6.95383250278895	6.57746797607281	7.05502815166829	7.05144522684176	7.08044718622667	7.14483162203977	6.91985699421198	7.35713060805206	0.28434826828066	0.184814725140158	0.48251943369223
Merged-chr13-17795335-1	chr13	17795235	17795435	+	676.0	f0_balb.idr	intron (NM_027118, intron 1 of 13)	intron (NM_027118, intron 1 of 13)	9762.0	NM_001081058	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	3.32901086079048	3.32223800217075	3.55361964166029	3.34037649300635	3.95773853944379	3.17115367124566	3.68251718089125	3.19981064261864	0.550443656712799	0.341327982391282	0.65042659113402
Merged-chr7-80501101-4	chr7	80500997	80501197	+	927.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042527, intron 7 of 21)	intron (NM_001042527, intron 7 of 21)	33901.0	NM_007550	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	5.01525504600975	5.38557098306848	5.23858878827039	4.92856722097649	5.19735473127026	4.74776567300705	4.68195280407167	5.31932197457137	-0.236027097421861	0.502979573446439	0.770096714963506
Merged-chr12-73054061-4	chr12	73053986	73054186	+	979.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7374.0	NM_009189	20471.0	Mm.4645	NM_009189	ENSMUSG00000051367	Six1	BB138287	sine oculis-related homeobox 1	protein-coding	5.23271968043623	5.16321602470969	4.79454544777008	5.59244016463717	4.69924190247023	4.66253577020611	4.88658002678703	4.94306989138	-0.871745360572365	0.0140556346528043	0.100291759559711
Merged-chr4-117002789-2	chr4	117002689	117002889	+	635.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_175244, exon 18 of 21)	exon (NM_175244, exon 18 of 21)	7441.0	NM_175244	76608.0	Mm.251420	NM_175244	ENSMUSG00000046861	Hectd3	1700064K09Rik|AI467540|AW743312	HECT domain E3 ubiquitin protein ligase 3	protein-coding	2.99995432434519	3.03884080534687	3.05685013997146	2.92727832386461	3.0712861282251	2.7002851684391	2.80568343148067	2.87789550377685	-0.540236449989219	0.387294755214444	0.688149110868919
Merged-chr12-85381819-4	chr12	85381715	85381915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-7098.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	7.18302924133172	7.16315791993833	7.05877952683414	7.14164281061537	6.72849733719711	6.96991991241024	7.12641775667541	6.8735275774968	-0.294635268204652	0.130626247011641	0.402295155591969
Merged-chr1-74238331-4	chr1	74238226	74238426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	1809.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	5.71803115145751	5.81095286573946	5.81957839107134	6.17669420987645	5.89009496783681	5.70040446454035	5.96880223682467	6.01592028703118	-0.0238037754873451	0.928244103566101	0.97394547454608
Merged-chr17-26243768-4	chr17	26243651	26243851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	491.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	5.37945278710324	5.72247085312563	5.54968702679494	5.27688252196189	5.6077171690168	5.32851135613787	5.49524249571321	5.545780155878	0.0385500852736412	0.892736510120338	0.959851546084039
Merged-chr9-56258583-4	chr9	56258453	56258653	+	817.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172924, exon 4 of 7)	exon (NM_172924, exon 4 of 7)	-97483.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	3.6504980716253	4.0909805472589	3.59436904084131	3.54599380250326	3.85920401840433	3.71209929876116	3.9288625966796	3.47169623702568	0.0619448930782341	0.901884041833765	0.963588121068215
Merged-chr9-65718366-4	chr9	65718254	65718454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 3 of 9)	intron (NM_172536, intron 3 of 9)	41806.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	5.97322162979811	5.8046826611585	5.79364585523815	5.93110728879216	5.32820398094377	6.08376794785011	5.98479059249727	5.68859812211784	-0.145748086984701	0.609365126379093	0.830967173169002
Merged-chr1-173350126-3	chr1	173350021	173350221	+	906.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053199, intron 1 of 8)	intron (NM_053199, intron 1 of 8)	-16618.0	NM_010045	13349.0	Mm.6393	NM_010045	ENSMUSG00000037872	Ackr1	AA162249|CCBP1|CD234|Darc|Dfy|ESTM35|FY|GPD	atypical chemokine receptor 1 (Duffy blood group)	protein-coding	4.19597203333986	4.11735191509634	3.77572818027897	4.41555583507861	3.60809365529417	3.51214899435682	3.86575842112617	3.82772893489536	-1.27833262673801	0.00857372592290399	0.0705758341004259
Merged-chr7-30445537-4	chr7	30445481	30445681	+	893.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007467)	promoter-TSS (NM_007467)	1.0	NM_007467	11803.0	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	4.56355233604736	4.63419635128267	4.27463866835584	4.53052848197109	4.41565273395653	4.08553692347112	4.11045992472819	4.40414522902611	-0.56339487113376	0.154168656932471	0.439364623310231
Merged-chr5-32744786-4	chr5	32744680	32744880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347332, intron 2 of 8)	intron (NM_001347332, intron 2 of 8)	1562.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	5.64250209448316	5.54549744404409	5.34815984729986	5.42578639412635	5.22660173705468	5.52292494744505	5.19557999520475	5.43201229721811	-0.260228776819191	0.360683127885576	0.665936747041206
Merged-chr11-116464052-4	chr11	116463962	116464162	+	870.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-9715.0	NM_001033267	217341.0	Mm.387352	NM_001033267	ENSMUSG00000070331	Qrich2	Gm66	glutamine rich 2	protein-coding	3.82588995443458	3.72967218665018	3.82642590334955	3.69610467422542	4.1257230012315	3.71374165060797	4.09225181905146	4.2676014994769	0.844673200274824	0.0557724125486786	0.24721768439441
Merged-chr8-46163668-4	chr8	46163560	46163760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357215)	promoter-TSS (NM_001357215)	9.0	NM_025747	66756.0	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430	cilia and flagella associated protein 97	protein-coding	7.55339737608137	7.43376806845067	7.23821980291861	7.56951309361664	7.51357535517954	7.33453432588042	7.56029198615104	7.22187556018055	-0.0568172129892794	0.763088681620244	0.907078979109007
Merged-chr5-18009342-4	chr5	18009220	18009420	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	46750.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	4.61682905670044	4.604952865861	4.52851170325506	4.83738141389644	4.86582809003365	5.06032425601127	4.93209676105164	5.10791363638407	0.647913047762282	0.0553423563676572	0.245992010951455
Merged-chr11-98777028-4	chr11	98776919	98777119	+	810.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1642.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	3.83887661938198	3.93739764788087	3.67651937794988	3.54114882788772	3.91054867831066	4.06031927405917	4.01067884615301	3.83719532484951	0.601180316822469	0.182239274511041	0.47878218634963
Merged-chr17-57341757-4	chr17	57341662	57341862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16924.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	6.69213572860079	6.20967470457303	6.8724158292427	6.97432137384021	6.72808084162551	6.20796847429947	6.74463956641829	6.82844665774155	-0.104325279386512	0.689340537151836	0.873332932172549
Merged-chr2-27745016-3	chr2	27744918	27745118	+	972.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 4 of 9)	intron (NM_001290481, intron 4 of 9)	34435.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	3.72754062795249	3.85668857495792	4.30048104230592	4.07436066485466	3.46001072181078	3.84832342572079	3.65737220309551	3.83247343915004	-0.899014599711171	0.0646783744843751	0.270378928608876
Merged-chr18-32352819-4	chr18	32352722	32352922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-24395.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	7.02409773294504	7.52851533090777	7.25464384376245	7.13476921623139	7.03914736688982	6.8912817171479	7.17588738272694	6.98206345696621	-0.301494194715915	0.140362638448927	0.416558988115225
Merged-chr19-5800255-7	chr19	5800134	5800334	+	957.5238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002847, exon 1 of 1)	non-coding (NR_002847, exon 1 of 1)	2438.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	4.93054649630301	4.73660237984115	4.60073142010097	4.33345759529673	4.60848677267948	4.89390658183793	4.6983995517606	4.89527952743408	0.260839913353675	0.476951123163143	0.753241702412926
Merged-chr4-117251964-4	chr4	117251906	117252106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285812)	promoter-TSS (NM_001285812)	55.0	NM_001285815	68777.0	Mm.331805	NM_026837	ENSMUSG00000048772	Tmem53	1110038M16Rik|1500001P22Rik|1700012A05Rik	transmembrane protein 53	protein-coding	6.00142678069661	6.34933209766783	5.78319052123502	6.00384450604284	6.11766715866402	6.36437413696747	6.41678160039161	5.92926188643826	0.253801756592171	0.327686927291034	0.639130025464207
Merged-chr3-94581416-3	chr3	94581317	94581517	+	868.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082484, intron 1 of 11)	intron (NM_001082484, intron 1 of 11)	1299.0	NM_001082484	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	3.26463919493912	3.19611711664706	3.26507735273627	3.45030726696044	3.29514508089107	3.25968182137293	2.80137676573802	3.08635148581437	-0.660908482228714	0.274650846014099	0.586399081181761
Merged-chr9-114933997-4	chr9	114933890	114934090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175380)	promoter-TSS (NM_175380)	-3.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	7.8638641300645	7.8916077766671	7.72904938131465	8.02222751459133	8.07626491614106	7.89844799437473	8.61822297979765	8.15562873170231	0.424219970998845	0.034720209602279	0.184454036276042
Merged-chr16-16829380-4	chr16	16829297	16829497	+	893.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015773)	promoter-TSS (NM_015773)	-34.0	NM_015773	50525.0	Mm.31701	NM_015773	ENSMUSG00000022783	Spag6l	PF16|Spag6|Spag6l1	sperm associated antigen 6-like	protein-coding	4.04150416411751	4.43201024126054	4.28883477046295	4.22184779347188	4.52221136713424	4.54626972257292	4.31360015166062	4.2404954394598	0.384871063848864	0.32276334986897	0.634237155407433
Merged-chr18-21000432-3	chr18	21000343	21000543	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303005)	promoter-TSS (NM_001303005)	-857.0	NM_019706	56515.0	Mm.253542	NM_019706	ENSMUSG00000024317	Rnf138	2410015A17Rik|2810480D20Rik|STRIN|Trif|Trif-d	ring finger protein 138	protein-coding	3.70161242900838	3.42222535594866	3.44255535606061	3.56238170016548	3.56703900450001	3.36943953575352	3.68602496598071	3.3820290448529	-0.0843270487905705	0.866936263295125	0.95017995041061
Merged-chr2-145675396-3	chr2	145675391	145675591	+	714.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25704.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	3.18380186047286	2.96938472444854	3.18419158785826	3.35076242469614	3.20998000804372	3.41408921801511	3.17291835042651	3.50401822348707	0.512536308946012	0.362966508925182	0.668158239901494
Merged-chr4-62283590-4	chr4	62283463	62283663	+	950.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2866.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	4.00369830930603	3.89879192783486	4.33042487509444	3.9414326678689	4.1779656175173	4.4169653751081	4.18185915454875	4.51781889349348	0.708429067543831	0.0866085795144461	0.321062032251381
Merged-chr5-90366556-4	chr5	90366463	90366663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030886)	promoter-TSS (NM_030886)	-378.0	NM_198010	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	7.62137239054393	7.60459353366321	7.28017909894342	7.50503085792744	7.82261395325135	8.2597326246331	7.96832521319875	8.08896965132698	0.689161094606018	0.000188053641287239	0.00345609866593967
Merged-chr2-52513856-4	chr2	52513764	52513964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	44747.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	5.72264693706877	5.76707904380489	6.05436612670219	5.63518525328604	5.78439085455016	5.68180089565576	5.59029460378336	5.94928623672035	-0.0525478404895098	0.843278071597743	0.940459539910433
Merged-chr8-77388391-3	chr8	77388281	77388481	+	734.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 11 of 22)	intron (NM_030113, intron 11 of 22)	-128675.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	3.05386521677851	3.11618685341838	3.28496382494554	3.23097043135751	3.08269199407286	3.16268507096615	3.10498581394332	3.22943031452779	-0.134380936787301	0.807661189368688	0.92582798360164
Merged-chr4-95867295-3	chr4	95867183	95867383	+	882.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 14 of 15)	MIRb|SINE|MIR	99752.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	4.54526457839083	4.20301976128196	4.34475961803332	4.39993235481386	4.0921584871253	4.17821434118145	4.28130994227133	4.71604024296477	-0.101095457248179	0.805059946649404	0.925171083261684
Merged-chr8-79680692-4	chr8	79680638	79680838	+	883.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31002.0	NM_015751	24015.0	Mm.5831	NM_015751	ENSMUSG00000058355	Abce1	C79080|Oabp|RLI|RNS41|RNS4I|Rnaseli	ATP-binding cassette, sub-family E (OABP), member 1	protein-coding	4.20715916773627	4.32321190065067	4.48955155538209	4.20683559563144	4.03761652584916	4.18932765652501	3.99720981502814	4.11183457489699	-0.566806477502917	0.161203424525581	0.449892286675443
Merged-chr2-150831239-4	chr2	150831126	150831326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153781, exon 20 of 20)	3' UTR (NM_153781, exon 20 of 20)	11344.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	6.5720675874137	6.30608171677934	6.93227877698317	7.19070247578701	6.31868940433505	6.15227765492415	6.5073090809738	6.58440723273557	-0.587514722313419	0.0288131186338213	0.163084795368314
Merged-chr14-54423534-3	chr14	54423452	54423652	+	687.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3357.0	NM_026851	68836.0	Mm.248163	NM_026851	ENSMUSG00000010406	Mrpl52	1110047B07Rik	mitochondrial ribosomal protein L52	protein-coding	3.31298185061853	3.66410205603486	3.1893586241199	2.85812069250395	3.55561718981004	3.48744096771002	3.35797810929506	3.31165699226692	0.506717434409834	0.392904015236772	0.692205902019298
Merged-chr18-38297466-4	chr18	38297355	38297555	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164621, intron 1 of 9)	MIR|SINE|MIR	650.0	NM_001164621	56736.0	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding	6.01073567911346	6.05606389480564	5.23221277080628	5.68271782036057	5.80277840646269	5.81743017277087	6.13109348491875	5.36834081499301	0.0396331991107508	0.901094279896132	0.963342914941175
Merged-chr16-23609901-4	chr16	23609806	23610006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023386)	promoter-TSS (NM_023386)	-13.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	7.00372792985636	7.18662490143425	6.69176553437878	6.99844313769183	7.31828811678582	7.29001981768121	6.98206879388808	6.98734786830715	0.236810399838906	0.258438484522251	0.57036440809281
Merged-chr13-24801277-5	chr13	24801239	24801439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024473)	promoter-TSS (NM_024473)	-318.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	6.77339865258276	7.26419794207668	7.28841569699812	7.05095970447383	7.46866290021698	7.75547321555709	7.26246311268636	7.45997226969919	0.521164972153229	0.0126258655602419	0.0931581304770871
Merged-chr14-56875937-6	chr14	56875816	56876016	+	913.0277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6C|LTR|ERVK	-10687.0	NM_177627	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	4.31256107021327	4.21908616880095	4.15313082050802	3.61346870777925	3.90699795846859	3.75501073507241	3.79755603271996	4.01557515637299	-0.593449809009038	0.218607619987387	0.525898059452555
Merged-chr8-72239979-5	chr8	72239828	72240028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007456)	promoter-TSS (NM_007456)	-90.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	7.53658662424066	7.58110941430638	7.26112520122006	7.0784229130847	7.46980543064758	7.74110071219741	7.31007543846669	7.4690455373014	0.177457663821701	0.390383935662894	0.690569565001966
Merged-chr3-27195370-4	chr3	27195295	27195495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	RMER1A|Other|Other	12391.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	5.83250708367323	5.82414062122944	5.99192920000034	5.98960117870935	6.04073838095848	5.88351268058111	5.82772409858049	5.98766225960943	0.0408106797199193	0.866183967988924	0.949861736890724
Merged-chr11-119079269-4	chr11	119079170	119079370	+	778.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007625, exon 5 of 5)	3' UTR (NM_007625, exon 5 of 5)	6967.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	4.04301075872952	4.35667115474328	3.85263211488057	3.5541122396247	3.6757216274269	3.80900838910947	3.73060450131486	3.94926001644634	-0.528210353574	0.289156452331653	0.601163318084731
Merged-chr10-19942106-4	chr10	19942024	19942224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	7598.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	6.92868334688238	7.07829798436905	6.94261372914169	6.81110058176301	6.76053327399049	7.05394774979693	6.59404975802501	6.59020050695275	-0.249585994035997	0.239180398793784	0.549614418057695
Merged-chr7-120201587-4	chr7	120201494	120201694	+	823.849976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016669, intron 1 of 7)	intron (NM_016669, intron 1 of 7)	394.0	NM_016669	12971.0	Mm.9114	NM_016669	ENSMUSG00000030905	Crym	-	crystallin, mu	protein-coding	2.90526713298238	2.75151947449731	2.90565213552572	2.74295601868218	2.64955962730711	2.82249315174487	2.83531297324233	2.90409508989113	-0.0988392627976679	0.873801472314476	0.952718075588848
Merged-chr7-101584491-3	chr7	101584387	101584587	+	872.4111330000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3326.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	3.80662814374507	3.49940754275218	3.6875267807565	3.38271736065781	4.19234636809168	4.19567847972786	4.37584777233474	4.62646488975335	2.12494019459423	2.04514054235331e-06	6.67145090119918e-05
Merged-chr1-165237023-4	chr1	165236922	165237122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145513)	promoter-TSS (NM_145513)	-62.0	NM_001357410	226591.0	Mm.21520	NM_145513	ENSMUSG00000040843	Tiprl	1810011K17Rik	TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	protein-coding	8.88581616666428	8.92498936556657	8.81310134793972	8.91568824163443	8.89501492185959	8.81413073526161	8.85862796845491	8.6940856555285	-0.0841431352505475	0.552126290221913	0.799371172712563
Merged-chr11-101465165-4	chr11	101465064	101465264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012037, intron 1 of 5)	intron (NM_012037, intron 1 of 5)	1035.0	NM_012037	26949.0	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	6.43775820803138	6.68901562736289	6.95001922917497	6.65332826671059	6.45398265791844	6.38703439257741	6.15596449420622	6.4166452627608	-0.483232694194039	0.0330037568873849	0.17828275805871
Merged-chr5-32464861-3	chr5	32464760	32464960	+	626.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172707, intron 1 of 7)	intron (NM_172707, intron 1 of 7)	5890.0	NM_172707	19046.0	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	3.62693926513071	4.09571513026741	4.06762248841444	3.59553095517297	3.59036620293299	3.80423613589922	3.96395520992706	3.50397174223973	-0.400245317138878	0.427318052733325	0.718495539543744
Merged-chr10-51597446-4	chr10	51597331	51597531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-6971.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	6.56304653514286	6.60860821524355	6.82305610676921	6.84736261629699	6.21886455021327	6.03798359717348	6.63725567619112	6.6065183599408	-0.472555933185962	0.0484496137663637	0.227195141858884
Merged-chr17-72944138-4	chr17	72944022	72944222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	25817.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	4.57099266696771	4.1791790452804	4.97491599528164	4.95847614497939	4.74887006713219	3.97831092569544	4.24140372640372	4.48702717674185	-0.682277020106378	0.13662799207127	0.411137391039188
Merged-chr12-8306709-6	chr12	8306666	8306866	+	681.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4812.0	NM_013527	238057.0	Mm.271308	NM_013527	ENSMUSG00000037660	Gdf7	BMP12	growth differentiation factor 7	protein-coding	3.47345231607802	3.58491349633466	3.414733195383	3.37400317994683	3.69937677752256	3.64671229259729	3.76432214039509	3.52859692276397	0.663302163245879	0.166077010939086	0.457138132665884
Merged-chr13-58687838-4	chr13	58687709	58687909	+	959.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	74502.0	NR_045469	67585.0	Mm.84751	NR_045469	ENSMUSG00000114384	4930455J16Rik	-	RIKEN cDNA 4930455J16 gene	ncRNA	4.50781324790969	4.53524835697414	4.77957080226811	4.57242145080298	4.58474944195865	4.80372560739392	4.53020223212244	4.66732145940298	0.101821210606175	0.770717966306944	0.910265273875382
Merged-chr6-116266816-4	chr6	116266732	116266932	+	972.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290339, intron 1 of 6)	L1MC1|LINE|L1	300.0	NM_001290339	67492.0	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	5.8468201529821	5.85924195941853	5.3142211748335	5.71024198284182	6.09843715320209	5.90290376375823	5.88463043039895	5.64550876328593	0.320656092141221	0.243770034359996	0.554780255650025
Merged-chr19-6910111-4	chr19	6910001	6910201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358444)	promoter-TSS (NM_001358444)	5.0	NM_012021	54683.0	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|PLP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	7.03525638038735	7.19436924261512	6.71111497357411	6.1855147682512	7.14833614702728	7.06127757443023	6.83581563295924	7.12352291740495	0.310011692401101	0.240537717900472	0.551124516269802
Merged-chr7-68739191-4	chr7	68739105	68739305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001042592, exon 8 of 8)	3' UTR (NM_001042592, exon 8 of 8)	10033.0	NM_001042592	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	6.45013327827858	6.35960567074449	6.46865013098263	6.85490663881986	6.71120450826051	6.44082203850181	6.72554946121364	6.42905673771678	0.0341862579648734	0.884724737688019	0.956700019808816
Merged-chr5-53588619-4	chr5	53588513	53588713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080928, intron 1 of 10)	intron (NM_001080928, intron 1 of 10)	-1733.0	NM_009035	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	6.40215267638162	6.49942670765677	6.21941311027275	6.27671019858067	6.22441958665422	6.49017165625631	6.1677849596873	6.21497029481414	-0.112897964647813	0.618580959488464	0.836022749315106
Merged-chr15-59845383-5	chr15	59845287	59845487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50428.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	4.55630152190424	4.56577489355243	5.16285444869107	4.74917062193568	4.25525632252307	4.13408889871488	4.36253680302362	4.70798928291369	-0.885705885486621	0.028943687701257	0.163467646345138
Merged-chr8-25615972-3	chr8	25615884	25616084	+	660.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001735, intron 1 of 9)	B3|SINE|B2	13700.0	NM_001308482	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	3.74915953750824	3.42197088349007	3.13787860633725	3.2944180028337	3.52476067230781	3.50986876283118	3.32301943693033	3.65580304077177	0.315617490958358	0.556887958606333	0.802235069284239
Merged-chr13-99211188-4	chr13	99211067	99211267	+	974.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	26344.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	4.81612794430014	4.84179966233132	4.81688804942991	5.2390537918823	5.22359879447373	4.99207402549972	5.04373904051805	5.30087717452226	0.353777038104573	0.289158719864945	0.601163318084731
Merged-chr17-27634807-2	chr17	27634707	27634907	+	717.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025963, intron 1 of 5)	intron (NM_025963, intron 1 of 5)	435.0	NM_025963	67097.0	Mm.275810	NM_025963	ENSMUSG00000052146	Rps10	2210402A09Rik	ribosomal protein S10	protein-coding	3.27625614119909	3.15278075679847	3.38012280861604	2.96373123268859	3.07054811922397	3.01422564691734	2.96556457244865	3.32749647444411	-0.360167793218574	0.541197861766387	0.793100056248944
Merged-chr4-141500770-4	chr4	141500665	141500865	+	951.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	37832.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	3.88283185619695	4.27791558932533	3.81519704129993	3.97177546978185	5.04147087805712	4.88696394319499	4.9187295268445	5.13587298829218	2.22204428679585	1.283262530514e-08	6.67699880551577e-07
Merged-chr6-122595847-4	chr6	122595755	122595955	+	939.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031159, intron 3 of 7)	intron (NM_031159, intron 3 of 7)	6589.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	4.90884896319694	4.98296262898763	4.48695122383548	4.32835191167871	5.23156772517157	5.21947539464196	5.08429521126896	5.16645018977661	0.967561737713709	0.00584614528406499	0.0532673881748564
Merged-chr5-8082891-3	chr5	8082787	8082987	+	824.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310440, intron 29 of 30)	intron (NM_001310440, intron 29 of 30)	26345.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	3.77905842102495	3.84218315060614	3.92405970037589	4.37340669405792	3.61242873897198	3.5472486530647	3.60328957913562	3.42981724315495	-1.41735194260764	0.00543325368829295	0.0505071913646342
Merged-chr9-83546508-4	chr9	83546406	83546606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1832.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	6.4599461748131	6.94479967905157	6.87999812676346	7.06113748910496	6.91562811462412	6.54465451536082	6.95808606197134	6.7059554284167	-0.098873475985503	0.66582939834039	0.861676528508039
Merged-chr6-145214204-3	chr6	145214096	145214296	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163628, intron 1 of 2)	URR1A|DNA|hAT-Charlie	3049.0	NM_001362057	67636.0	Mm.486359	NM_133688	ENSMUSG00000040370	Etfrf1	4930469P12Rik|AL022899|Ghiso|Lyrm5	electron transfer flavoprotein regulatory factor 1	protein-coding	3.95118724953502	3.62207711158916	3.764329709017	4.02681861667292	3.91012218831887	3.53363802855227	3.47162178666121	3.65710442832745	-0.572752005068351	0.251409968370947	0.562842767366097
Merged-chr1-133033977-7	chr1	133033788	133033988	+	944.7698359999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3301.0	NM_001302802	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	4.64794280104942	4.91767028501189	4.60634094335533	4.51505615042716	5.11346770714739	4.82435363088575	4.8535556818468	4.90812851335879	0.548185686246801	0.106401137126209	0.359565424654914
Merged-chr14-8098245-4	chr14	8098168	8098368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178279)	promoter-TSS (NM_178279)	57.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	6.11221301652778	5.9333968844277	6.38511254274872	6.19264386866211	5.80788939532727	6.24744595804731	6.06170965348523	5.86419351785393	-0.260573705013827	0.302846369686551	0.615349311978505
Merged-chr13-60602585-4	chr13	60602452	60602652	+	931.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001285917, exon 2 of 27)	exon (NM_001285917, exon 2 of 27)	341.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	4.3392302682868	4.47215395966595	4.63980935492673	4.83088514135077	4.1522510586741	4.6084059831395	4.69139148498488	4.81439496514897	-0.0331258286593186	0.934246952688985	0.976332045936076
Merged-chr19-45311118-4	chr19	45311004	45311204	+	811.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52630.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	3.69197674040456	3.32173200913291	3.69253939653199	3.35805290700238	3.43301322432604	3.24504933828136	3.58426880176047	3.20201907414826	-0.493240597526923	0.366057884933165	0.670655432077881
Merged-chr5-33629771-4	chr5	33629702	33629902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178390)	promoter-TSS (NM_178390)	-167.0	NM_001359463	74504.0	Mm.294695	NM_178390	ENSMUSG00000037339	Fam53a	2410018C17Rik|5430419M09Rik|Dntnp	family with sequence similarity 53, member A	protein-coding	8.44879641472093	8.59533670994816	8.3819771292172	8.37436427110473	8.61102441132579	8.79511522777333	8.51825839313856	8.22794996110917	0.128699476919944	0.460585398915529	0.742687499720882
Merged-chr11-3162662-4	chr11	3162531	3162731	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 9 of 32)	intron (NM_030207, intron 9 of 32)	30832.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.11732555921302	4.82475368158463	5.45144899484067	5.05119113105247	4.66256126748632	4.56774502334801	4.46331207305073	4.48032507269979	-1.18427161420186	0.00102400642804435	0.013700705552964
Merged-chr5-136568103-4	chr5	136567982	136568182	+	788.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009986)	promoter-TSS (NM_009986)	-592.0	NM_001291238	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	3.6348990559966	3.19693525175773	3.73034465442284	3.36128146727714	3.62707225943197	3.47622110247634	3.34977741077244	3.53082044466009	0.0486647672978999	0.926633470808587	0.97306526146631
Merged-chr11-69008453-4	chr11	69008319	69008519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159519)	promoter-TSS (NM_001159519)	41.0	NM_001159519	237823.0	Mm.340288	NM_001159519	ENSMUSG00000020899	Pfas	4432409B16Rik|FGAMS|FGAR-AT|FGARAT|Gm18|PURL|Sofa	phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)	protein-coding	5.51323421112044	5.79571196152311	4.92971163798222	5.18591623091057	5.27606506767944	5.36619392647964	5.1301036887808	5.61026463414266	-0.0696281790219443	0.836250729891033	0.93770267971445
Merged-chr11-114989948-4	chr11	114989840	114990040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145437)	promoter-TSS (NM_145437)	-54.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	6.04453082729241	6.37671613023332	6.13180447125586	6.43328553243545	5.88356148035808	6.42643911325004	6.18070647113978	6.42293720901302	-0.0509019821471241	0.842214409298183	0.940124508977126
Merged-chr6-122740083-3	chr6	122739989	122740189	+	837.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011401, intron 2 of 9)	intron (NM_011401, intron 2 of 9)	2656.0	NM_011401	20527.0	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	3.59465287733479	3.46252238335093	3.47639375487634	3.50871699306028	3.4418989613101	4.27004684610448	3.58078220600527	3.89559620797476	0.96082625381101	0.0636577854008583	0.267969572833857
Merged-chr2-124928097-4	chr2	124928008	124928208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140019.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	6.80030196199027	6.90062214654023	6.60459729867781	7.06189237728206	6.76672931272443	6.8603727099978	6.82176768007329	6.73918276337691	-0.102226935354688	0.623182248837818	0.838922840312846
Merged-chr5-140608132-6	chr5	140608108	140608308	+	979.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008494, intron 1 of 7)	intron (NM_008494, intron 1 of 7)	867.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	4.43292290158623	4.62523255040021	5.06287228084988	5.0168469885412	4.90448373033356	4.6122813147478	4.67071443728438	4.5229344252666	-0.263906652547617	0.484293739634221	0.758449815036836
Merged-chr13-58487427-4	chr13	58487341	58487541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84098.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	5.81057621598499	5.40193151948711	5.7176830073709	6.078506912954	5.15763215634639	5.68228993223745	5.68858861286331	5.58554608632826	-0.424940079969387	0.166017006665439	0.457028330655912
Merged-chr7-137478449-4	chr7	137478353	137478553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40779.0	NR_033611	620016.0	Mm.388932	NR_033611	ENSMUSG00000100863	Gm12669	-	glutaredoxin 3 pseudogene	pseudo	6.37566789415992	6.60472935455587	6.66878471892847	6.95152794842265	6.58820655998433	6.9195620970736	7.19185124947415	6.48305572356985	0.202791974917526	0.42450347342401	0.716216287447796
Merged-chr2-170217710-4	chr2	170217616	170217816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-75041.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	5.30548720093985	5.60674088237185	4.96919752325616	5.3774006136578	5.46768398687052	5.18478975551354	5.05549887133652	5.14534411132095	-0.194831969856948	0.54099439252565	0.793009827469438
Merged-chr5-23751391-4	chr5	23751260	23751460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178403, intron 9 of 15)	intron (NM_178403, intron 9 of 15)	28303.0	NM_001289781	78697.0	Mm.58660	NM_178403	ENSMUSG00000057541	Pus7	C330017I15Rik	pseudouridylate synthase 7	protein-coding	5.93645391416177	6.19372475456279	6.09600633507871	5.89596902007129	5.32685603620278	5.57112434700966	5.5443756412978	5.28655218497371	-0.998884831994022	0.000189956048392459	0.0034840178983888
Merged-chr11-116029495-4	chr11	116029394	116029594	+	955.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172569)	promoter-TSS (NM_172569)	-822.0	NM_001286006	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	4.66443021378624	4.93497367488795	4.74638916990644	4.33893140982595	5.31943439209535	4.99693124766788	4.68443525805777	4.95976122842948	0.698575981603165	0.0574978755067386	0.251653525222539
Merged-chr7-99050096-4	chr7	99049964	99050164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	intron (NM_178635, intron 6 of 14)	91080.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	7.64255702957346	7.85836255969911	7.79433576861261	7.66922901486828	7.32519770385366	7.56031935248641	7.42616854199076	7.60450237605261	-0.349061917011738	0.0467876930286363	0.222405583149813
Merged-chr3-60538728-4	chr3	60538622	60538822	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	37543.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.77733311791651	4.71016852705822	4.650459409508	4.59428486127858	5.30178700274331	5.47345849240056	5.13545666040913	5.09614060174518	1.14133495310096	0.000279825617546811	0.00479285965572616
Merged-chr14-31685762-4	chr14	31685631	31685831	+	844.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44B|DNA|TcMar-Tigger	44674.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	3.29384651357305	3.38383192132678	3.46819318241942	3.10917816993167	3.1355417927704	3.52944923679787	3.69700852360763	3.57026640191366	0.628121122953456	0.248985695727916	0.560207151982062
Merged-chr2-121448405-4	chr2	121448298	121448498	+	767.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011354)	promoter-TSS (NM_011354)	-800.0	NM_011354	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	4.04443267649954	4.06764262268771	3.84888983793373	3.70858457956968	3.89047786620329	3.7992014316168	3.933881917629	4.25117027668627	0.174360744883959	0.698845412928999	0.878505428649175
Merged-chr1-86470704-4	chr1	86470617	86470817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44388.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	5.36472606867593	5.30624142817777	5.425937197071	5.55749469167968	5.5737408874483	5.65795674351841	5.6134580734491	5.68667574604065	0.343916150682367	0.201068658099939	0.503307188847283
Merged-chr5-38509014-4	chr5	38508921	38509121	+	964.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-6869.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	4.95792118552764	4.67178495244296	5.11808585968554	4.56186308482082	5.1972652546989	5.06241500610653	4.82935019741822	4.69263556301441	0.277745140079095	0.438356519147396	0.72634167615479
Merged-chr14-70096528-4	chr14	70096368	70096568	+	844.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3625.0	NM_021328	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	3.555708292874	3.53950782956045	3.92483505891164	3.56210459791275	3.72675248980896	3.84719411774015	4.07630563838424	3.87580530075824	0.696624765768306	0.135714941422801	0.410088886718184
Merged-chr7-27929490-4	chr7	27929383	27929583	+	960.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028538)	promoter-TSS (NM_028538)	-53.0	NM_028538	73430.0	Mm.379224	NM_028538	ENSMUSG00000070709	Zfp974	1700049G17Rik|AV321011|BB026409	zinc finger protein 974	protein-coding	4.7201794428505	4.44387337381062	5.07394248553041	4.69627504788379	4.46845090511909	4.36040861442349	4.83737510057091	4.56034604510538	-0.386924264790656	0.308535664332818	0.620845739286685
Merged-chr10-121473839-4	chr10	121473742	121473942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	2408.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	5.53954219912935	5.23502545226696	5.24062975209629	5.81545628456655	5.81489722532865	5.31241048389217	5.8967609399121	5.36464396656421	0.22881698496998	0.48041868452804	0.755947743876719
Merged-chr7-120831311-4	chr7	120831209	120831409	+	939.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11522.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	4.40403237979055	4.26351347545314	4.35894973574456	4.43413739826688	4.69875495605852	4.44091490061484	4.59017830246734	4.97100578666491	0.711116015714753	0.053561265484766	0.241590069220998
Merged-chr5-91302935-2	chr5	91302835	91303035	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19859.0	NR_040428	100503265.0	Mm.125059	NR_040428	ENSMUSG00000107198	Gm19619	-	predicted gene, 19619	ncRNA	3.47343778147168	3.94925383500369	3.19020612427481	3.04232483724319	2.95630838499078	3.36860395093398	3.11455376645464	2.9847369169655	-1.27901695415894	0.0471765384598171	0.223610797980573
Merged-chr2-112216123-4	chr2	112216014	112216214	+	910.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23727.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	4.15145749756458	3.98444585730681	4.10636124989166	4.22309999028925	4.30249270220257	3.97058541762612	3.8900085760522	4.23617850500324	-0.0111727325944009	0.978925082264653	0.992534627160032
Merged-chr1-86513199-2	chr1	86513099	86513299	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13358.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	2.86106312058781	3.17528102866723	2.92274609228389	2.47171472720989	2.7740560734555	2.83807927276944	2.96909366252945	2.65741607872063	-0.300215386475453	0.664629477625051	0.86104731513002
Merged-chr7-44125319-2	chr7	44125219	44125419	+	877.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45-int|LTR|ERVK	-11971.0	NM_008454	16615.0	Mm.440887	NM_008454	ENSMUSG00000038968	Klk1b16	Klk16|mGk-16	kallikrein 1-related peptidase b16	protein-coding	2.5014402179234	2.66096178458419	2.56414756428591	2.00731596450921	2.31910695304169	2.24108703683672	2.55353289838259	2.29395913334381	-0.580252984118065	0.488685851345988	0.761377570765248
Merged-chr7-35086782-4	chr7	35086671	35086871	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30205.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	5.84774143405157	5.46643370275866	5.1509987273945	5.67988140659989	5.75318926582275	5.59451017433957	5.77547247638907	5.32060735375262	0.102227498316528	0.734186601207569	0.894886177155566
Merged-chr15-50803639-3	chr15	50803539	50803739	+	943.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	85410.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	4.26025461260113	4.08000182588425	4.17659104098034	4.15623218937037	3.88866200285181	3.89023750737022	4.28095759851536	3.8817427345495	-0.457667907105445	0.282624375286529	0.594770434571737
Merged-chr5-107901008-1	chr5	107900908	107901108	+	1000.0	f1_balb.idr	intron (NM_016980, intron 1 of 7)	intron (NM_016980, intron 1 of 7)	480.0	NM_016980	100503670.0	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	4.82271515807814	4.73917848801467	5.17576217558994	4.5774040477911	4.68640148473233	4.99696898087388	4.83657917146395	4.82029376437044	0.00498232764766621	0.988733400515775	0.995492522898152
Merged-chr11-74497499-3	chr11	74497401	74497601	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	92657.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	3.87559350772264	3.90531196439477	3.78034940507057	3.22539024435855	3.53323384067586	3.62247968171382	3.85871597073429	3.72740526231804	-0.084251310026633	0.87293946762508	0.952362067441497
Merged-chr2-3961590-4	chr2	3961486	3961686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-56097.0	NM_001347086	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	6.29686909306383	5.94681665007132	6.24311086474278	6.29325359551516	5.93962566994839	5.97868463118623	6.13443418974857	6.47611882857288	-0.0925355141813969	0.714574277074278	0.885908809291798
Merged-chr4-133240713-2	chr4	133240625	133240825	+	889.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016693)	promoter-TSS (NM_016693)	-93.0	NM_016693	53608.0	Mm.36640	NM_016693	ENSMUSG00000028862	Map3k6	Ask2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding	2.44739949177391	2.81973298037912	2.60421659849459	2.41972168320003	2.83047660281865	3.04493547923315	3.17820258357902	2.80896563151321	1.87571221230279	0.00585127078017001	0.0532797240452503
Merged-chr6-113245763-4	chr6	113245664	113245864	+	699.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155434, intron 2 of 17)	intron (NR_155434, intron 2 of 17)	7921.0	NR_155433	97287.0	Mm.197816	NM_026849	ENSMUSG00000030269	Mtmr14	1110061O04Rik|AW553738|C76151	myotubularin related protein 14	protein-coding	3.31508721251404	3.63346243274873	3.4480165612056	3.81687723091211	4.17492985813434	3.68571128471096	3.85839610660429	3.62328897501835	0.82553149333906	0.119033158420476	0.381720183060508
Merged-chr18-60802053-3	chr18	60801949	60802149	+	809.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30|LTR|ERV1	-1800.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	3.20276913945297	3.80620170590299	3.13019523792239	3.33397345344789	4.10141761908901	3.45416211310142	3.71030442799606	3.62502860064798	1.09979451679123	0.0572046089139126	0.250678252655506
Merged-chr7-101357024-4	chr7	101356929	101357129	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	8960.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	4.99519179025811	4.80161083468737	4.74230329945795	5.12030291411107	4.7565080138775	4.91740772747435	4.97172396401866	4.85405037990229	-0.13484200455134	0.68435871130008	0.870717436816212
Merged-chr12-100529420-4	chr12	100529313	100529513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8591.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	5.97376436431676	6.2370617417845	5.97481737782605	5.94159537642507	6.0548183755236	6.10544036517486	5.67725831495834	5.94835911404775	-0.117908114148276	0.638377266187166	0.847153284197798
Merged-chr10-20349670-4	chr10	20349562	20349762	+	889.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027930, intron 2 of 6)	MTC|LTR|ERVL-MaLR	1843.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	4.48119740325394	4.35870117083652	4.31341442084114	4.25424087994511	4.58083765820423	4.48655709799059	3.93831698335002	4.5177868653674	0.146052446306421	0.718093612513436	0.887335796877561
Merged-chr9-106475118-2	chr9	106475025	106475225	+	646.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001311150, exon 3 of 11)	exon (NM_001311150, exon 3 of 11)	1824.0	NM_001311150	235587.0	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	3.07786913576656	3.34426050850429	3.02400344793062	2.7818769871465	2.4123836798184	2.67228559386054	2.63242391212455	2.56308849046919	-2.76675600693919	0.000551420791995635	0.00834887414114384
Merged-chr17-81658026-4	chr17	81657939	81658139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	80348.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	5.63307644680036	5.46376517763917	5.78022182715832	5.88684759515149	5.9581332470673	5.38924415791461	5.25316090240824	5.6040072689204	-0.188198807754345	0.53728721733313	0.790999096078477
Merged-chr1-13332786-4	chr1	13332688	13332888	+	928.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	L1M4|LINE|L1	39641.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	4.78523831387997	4.36960440541814	4.2436922091935	4.99642804919581	4.63648388229134	4.47284331566316	4.69364040941005	4.38781986429659	-0.210581650905288	0.605631471270432	0.82897585326498
Merged-chr13-22015868-4	chr13	22015756	22015956	+	921.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Val-GTY|tRNA|tRNA	-6115.0	NM_019429	54373.0	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	5.34033201313568	5.34683861006241	5.44046278711627	4.54530711535912	4.66843811282007	4.81387112240365	4.65488226858536	4.67350732375391	-0.99613851670583	0.00988523776264452	0.0782497040377307
Merged-chr10-13497339-4	chr10	13497242	13497442	+	903.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3686.0	NM_001330198	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	4.82557203085354	4.32429789026303	4.55468023131672	5.28711946261074	4.64556863455074	4.64316935142212	4.7679541864032	4.59424827608606	-0.330470483809305	0.418148712301492	0.711685688838332
Merged-chr12-55443333-4	chr12	55443215	55443415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44490.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	6.07392889835212	6.37328125850814	6.35499542562262	5.93515552759755	5.91341926236328	5.77948183555011	6.14380207995868	6.09138494201806	-0.306990711771193	0.230384263592833	0.539744634924437
Merged-chr10-13935875-2	chr10	13935790	13935990	+	1000.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-30185.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	3.22381226209866	3.56994097946273	3.30523189238524	2.84495972774651	4.48562652615978	4.50822715893027	4.51918829890161	4.29319124995193	3.86488800738355	3.18060768023503e-13	3.75443572257793e-11
Merged-chr6-30211000-4	chr6	30210903	30211103	+	868.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001169577)	TTS (NM_001169577)	32800.0	NM_001169577	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	3.84503691687924	3.75848618878922	3.90197277972231	4.05749670495753	4.45402328007477	4.02551383757343	4.58422114716409	4.23824067417554	1.10997580271387	0.010816132227842	0.0835646885754443
Merged-chr14-52190871-1	chr14	52190771	52190971	+	698.0	f0_balb.idr	intron (NM_033618, intron 1 of 25)	B3|SINE|B2	6368.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	3.07787141529673	3.09297705822158	3.02348871071457	3.21716832018613	2.58082064982097	2.66128472437473	2.62820042789578	2.84194074703167	-2.19830432404129	0.00171070315544546	0.0206872780726663
Merged-chr4-43454254-4	chr4	43454157	43454357	+	875.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007654, exon 2 of 9)	exon (NM_007654, exon 2 of 9)	369.0	NM_001110320	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	4.00637421434731	3.88172784489771	3.63610037843562	3.52446038621564	3.74238617744901	4.1777981749027	3.84436152402992	4.25425678930296	0.701441587055549	0.14084578949844	0.417402079106144
Merged-chr9-44379387-4	chr9	44379277	44379477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021395)	promoter-TSS (NM_021395)	-113.0	NM_021395	12282.0	Mm.116721	NM_021395	ENSMUSG00000032115	Hyou1	AI415631|CBP-140|Cab140|Grp170|Orp150	hypoxia up-regulated 1	protein-coding	8.43731539108028	8.57769657049769	8.0384151493857	8.10126722602684	8.66105061054154	8.76585191952525	8.5437839328793	8.39690874997265	0.370527738778451	0.0481706154521564	0.226483667168838
Merged-chr11-32644240-4	chr11	32644141	32644341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	1686.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	6.68547952640896	7.04919212495005	6.79388835087794	7.06768900782581	7.18656065641548	6.94169139278503	7.31654553648661	6.84644837583034	0.235081173117454	0.276100759530106	0.588118744391711
Merged-chr12-17544775-4	chr12	17544657	17544857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013614)	promoter-TSS (NM_013614)	-116.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	8.63682976919561	8.81155241527779	8.52983280579378	8.554625264381	8.73945483390986	8.77941496776635	8.85798183971467	8.54387872941532	0.123114678146724	0.434755230715776	0.723971611620771
Merged-chr2-128122557-3	chr2	128122433	128122633	+	743.955566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028765, intron 17 of 17)	intron (NM_028765, intron 17 of 17)	-3505.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	3.80391868806511	3.79996840890712	3.31363928351533	3.61036346434151	3.64532657526454	3.49196431361901	3.48567181327421	3.60692867559824	-0.264852678554219	0.599107721073016	0.826191775225346
Merged-chr2-4651726-2	chr2	4651626	4651826	+	969.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026045, intron 1 of 9)	intron (NM_026045, intron 1 of 9)	409.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	2.888171874993	2.98471030013367	3.02229008167801	3.2307290138494	3.17774353362552	3.31191550071608	3.07360121722514	3.2529330981005	0.598696406571899	0.304582558751534	0.617126795138548
Merged-chr14-32812622-4	chr14	32812525	32812725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163616, intron 4 of 4)	intron (NM_001163616, intron 4 of 4)	-21337.0	NM_001164485	105511.0	Mm.32231	NM_001164485	ENSMUSG00000078127	Fam170b	4922501K12Rik|AI449756	family with sequence similarity 170, member B	protein-coding	5.42737265413741	5.54742579264852	4.88154641921879	5.54965205786912	5.10723051293317	5.09947260638341	5.17404349308801	4.56397705272112	-0.700140609156244	0.0457901278714852	0.219492080223989
Merged-chr11-78328391-4	chr11	78328287	78328487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201406)	promoter-TSS (NM_201406)	-35.0	NM_201406	276846.0	Mm.295908	NM_201406	ENSMUSG00000041958	Pigs	BC058979|Gm393|Gm689	phosphatidylinositol glycan anchor biosynthesis, class S	protein-coding	7.29023029148088	7.27939302599282	6.69156719807832	6.82298178305652	7.14091286395967	7.22269681335238	7.07014636279315	7.38387388917786	0.226247243968937	0.308749092725231	0.621101988838968
Merged-chr16-11175702-4	chr16	11175612	11175812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027502, intron 1 of 22)	intron (NR_027502, intron 1 of 22)	681.0	NR_027502	106205.0	Mm.226860	NM_145931	ENSMUSG00000037965	Zc3h7a	A430104C18Rik|AI447294|AW556219|HSPC055|Zc3h7|Zc3hdc7	zinc finger CCCH type containing 7 A	protein-coding	6.94051505012897	7.96294531720197	7.08424974838527	6.55688587725725	7.45333786524144	7.64834277489517	7.2612232857592	6.76062236859015	0.0924079842372338	0.844839881637771	0.941218991545198
Merged-chr1-190910059-4	chr1	190909950	190910150	+	923.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178775, intron 1 of 14)	intron (NM_178775, intron 1 of 14)	1720.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	4.34832607742087	4.63360636575508	4.34901472867889	4.20781149300612	4.10988700042617	3.96065908869127	3.99622134313739	4.64587314326875	-0.438433282451677	0.316565600430102	0.628499815121202
Merged-chr4-132809872-4	chr4	132809725	132809925	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13461.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	4.62480624913616	4.78861244462921	4.78295894818281	4.86178398239226	4.49993627444663	4.31267225521411	5.1099191162963	5.07513028097118	0.044051926147941	0.909506774302627	0.966320459266825
Merged-chr11-61760730-4	chr11	61760671	61760871	+	795.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144806, intron 1 of 11)	B3|SINE|B2	1317.0	NM_144806	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	3.64709908484324	3.93988769447104	3.5934872634329	3.44474841922202	3.80529524789549	3.59357841068953	3.52383826973144	3.64555753221818	-0.0314845563535762	0.949429451218863	0.981872090911877
Merged-chr1-180974580-4	chr1	180974475	180974675	+	920.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144794, exon 23 of 23)	3' UTR (NM_144794, exon 23 of 23)	32057.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	4.86517131121057	4.42088857327604	3.99469176192446	4.47349233587274	4.83887939858368	4.63405184627941	4.34984992597155	4.72957941624763	0.398626021823333	0.333800421114358	0.644557528456154
Merged-chr16-10786561-4	chr16	10786466	10786666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1030.0	NM_001271603	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	5.86269431553099	5.26956191237753	5.28427187027709	5.41492052916721	5.81984448936927	5.39533162007926	5.79099294999452	5.62858441803713	0.343848858892214	0.24546745824977	0.55654355006563
Merged-chr19-11111758-2	chr19	11111658	11111858	+	750.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027058, intron 3 of 6)	LTR87|LTR|ERVL?	19120.0	NM_027058	69369.0	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	3.27139958555522	3.42087334940038	3.27177919621853	3.40935416505426	3.43908184882106	3.62138517437057	3.38096206325096	3.78815763513833	0.708923018426046	0.167177859659323	0.458682830533957
Merged-chr10-37261288-4	chr10	37261188	37261388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122362.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	6.67916951599179	6.63448152502939	6.49534909787272	6.49644960874619	6.54108167969728	6.28858326639092	6.6883360004746	6.03612051852595	-0.228552584159831	0.334510821297978	0.645068635248264
Merged-chr8-79399468-4	chr8	79399368	79399568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008539)	promoter-TSS (NM_008539)	0.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	6.89362885013151	7.10753556911735	7.33054880876345	7.33196259208135	6.90650037033442	6.67456878114153	7.21431840732499	6.86223967063186	-0.350246711111701	0.106842843066097	0.360442045907469
Merged-chr11-75150880-4	chr11	75150797	75150997	+	983.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 15 of 18)	B4A|SINE|B4	17255.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	4.00330609051573	4.50968521409595	4.11255278187087	4.34359764212114	4.46355359641362	4.47944092286254	4.66870146844445	4.25799409011634	0.485938128241	0.226974110965573	0.535616160342754
Merged-chr3-107333191-4	chr3	107333100	107333300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045807)	promoter-TSS (NM_001045807)	89.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	8.89836475589097	9.20573543699408	9.09108376713208	8.99204354523648	9.04835094992611	8.98185377561198	9.0075874521672	8.83556162120874	-0.0985657821086133	0.509344282990627	0.773960180154769
Merged-chr9-69702734-4	chr9	69702622	69702822	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58218.0	NM_022378	64290.0	Mm.440890	NM_022378	ENSMUSG00000059246	Foxb1	C43|Fkh5|Foxb1a|Foxb1b|Hfh-e5.1|Mf3|Twh	forkhead box B1	protein-coding	5.15001727716508	5.64351804442656	5.24780957606662	5.64499093775641	5.25698788378682	5.0717560101325	4.98527685395295	5.1473779890258	-0.60390715882507	0.0544377313239306	0.243534247246073
Merged-chr14-66296972-4	chr14	66296897	66297097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029979)	promoter-TSS (NM_029979)	-28.0	NM_029979	66854.0	Mm.43871	NM_029979	ENSMUSG00000022043	Trim35	0710005M05Rik|A430106H13Rik|AW046487|HLS5|Mair|NC8|mKIAA1098	tripartite motif-containing 35	protein-coding	6.73084201396869	6.61066181895332	6.48911459723666	6.45192705256473	6.55748661255384	6.50493948433694	6.31516400694394	6.45047015949619	-0.150892981915806	0.482717264985713	0.757421686487144
Merged-chr14-99298585-4	chr14	99298485	99298685	+	890.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009769)	promoter-TSS (NM_009769)	-106.0	NM_009769	12224.0	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	5.16933079589029	5.26364210678737	5.70813827886203	6.07163385160938	4.8236722984706	4.49681459700531	4.6493081537738	4.66785968659579	-1.80982418383193	1.53431799230734e-06	5.17098581318389e-05
Merged-chr1-91095523-4	chr1	91095421	91095621	+	860.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 10 of 22)	intron (NM_008515, intron 10 of 22)	42077.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	3.88372014703995	4.24679409067229	4.08421951758959	4.28548830604341	3.8896408056395	4.05808136612965	3.97149796138381	4.17120907696511	-0.333356782146402	0.436495038556013	0.725138410805641
Merged-chr4-58986900-3	chr4	58986796	58986996	+	940.6555789999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025968, intron 1 of 9)	intron (NM_025968, intron 1 of 9)	182.0	NM_025968	67103.0	Mm.34497	NM_025968	ENSMUSG00000028378	Ptgr1	2510002C21Rik|Ltb4dh|Zadh3	prostaglandin reductase 1	protein-coding	3.6148567589571	3.67214516891547	3.56535579516711	3.37022931442208	3.35591029230951	3.32793845122225	3.33117587906761	3.45708059463997	-0.633619162279698	0.218938664443814	0.526338665105586
Merged-chr11-109495811-2	chr11	109495711	109495911	+	900.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361977, intron 1 of 10)	intron (NM_001361977, intron 1 of 10)	472.0	NM_001361977	74008.0	Mm.482224	NM_028710	ENSMUSG00000020604	Arsg	6330406P08Rik|AI846872|ASG	arylsulfatase G	protein-coding	3.04523873422768	2.83132201930881	3.35087719660126	3.08620012892428	3.29560670311181	3.6230311521331	3.33699124154612	3.34893543201385	1.15754650680461	0.0433022766959779	0.21166741938762
Merged-chr5-43870595-9	chr5	43870422	43870622	+	886.992615	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	RSINE1|SINE|B4	1713.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	3.13181654509847	2.78423858221786	3.46445888681398	2.85751648670225	3.12937413275048	3.18137628502173	3.39942747999561	3.51003776851452	0.865836647353266	0.163333083562931	0.452950697585456
Merged-chr7-19203165-4	chr7	19203060	19203260	+	969.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347582, intron 20 of 21)	intron (NM_001347582, intron 20 of 21)	-9378.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	4.93830945667196	6.23618426075808	5.14249376897229	4.74553031807734	6.06879319243996	5.93798634098314	5.82259567145071	5.68625414366668	0.760602431479559	0.20278039906054	0.505320783254999
Merged-chr4-53826459-4	chr4	53826365	53826565	+	949.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028053, intron 1 of 5)	intron (NM_028053, intron 1 of 5)	420.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	4.5774190126225	4.84857640472546	4.73422258840348	4.76073535608444	4.54769771686618	4.53048019259963	4.55740709722952	4.80222983504559	-0.272368208819051	0.432722968410976	0.722611204268057
Merged-chr9-118489808-4	chr9	118489658	118489858	+	959.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11569.0	NM_010136	13813.0	Mm.200692	NM_010136	ENSMUSG00000032446	Eomes	C77258|TBR-2|Tbr2	eomesodermin	protein-coding	3.99621535320595	4.22494992837911	4.52970616233165	4.05566473578326	4.14693248956112	4.06518600529059	4.50781924611146	4.52664554192427	0.281515764302209	0.507224116145412	0.772710503440438
Merged-chr8-34808210-6	chr8	34808093	34808293	+	877.569458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176933, intron 1 of 3)	CpG-13950	583.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	4.06393710593531	3.85700706286502	4.32168529735552	3.62067032738816	4.14262717598497	3.98241536535951	3.9989212784772	4.35691750853908	0.402983498605796	0.382634444301929	0.684637549504146
Merged-chr15-85037000-4	chr15	85036886	85037086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133750)	promoter-TSS (NM_133750)	-76.0	NM_001356617	73225.0	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	8.73732420440372	8.54367423077588	8.46797065029364	8.48169100190765	8.48671873292476	8.58903496177948	8.40337721092367	8.34088326403899	-0.12735360475387	0.41551389207813	0.709763938666409
Merged-chr1-30872227-3	chr1	30872088	30872288	+	844.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8932.0	NM_001081080	213109.0	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik	PHD finger protein 3	protein-coding	3.68864494008969	3.5498618450233	3.58384988424916	3.58278185687707	3.72246485897334	3.64308453149411	3.67400358986327	3.63556289186647	0.226428779992742	0.625063412578295	0.839729510294066
Merged-chr1-136051678-3	chr1	136051588	136051788	+	757.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001270609)	TTS (NM_001270609)	884.0	NM_001270609	226439.0	Mm.491831	NM_001270609	ENSMUSG00000097918	Ascl5	Ascl5-ps|Gm197|bHLHa47	achaete-scute family bHLH transcription factor 5	protein-coding	3.38700221425862	3.54301814122205	3.26576710002465	3.37530780068632	3.30993794875731	3.37865903749991	3.53616864512996	3.73821913351838	0.339777643957698	0.511360468057061	0.775335536390107
Merged-chr2-112501394-3	chr2	112501236	112501436	+	627.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028844, intron 1 of 5)	intron (NM_028844, intron 1 of 5)	8372.0	NM_028844	74268.0	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	3.31625104001401	3.4723583751517	3.37292272422387	3.38679498878251	3.21407011765827	3.17314773436439	3.51248029454964	3.31496536119342	-0.291316458527264	0.581254483295312	0.816214817149224
Merged-chr7-133637610-4	chr7	133637515	133637715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178115)	promoter-TSS (NM_178115)	-60.0	NM_178115	214764.0	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	8.54521447710206	8.5920933664108	8.59808558474637	8.41437888732299	8.59383836647922	8.64028906748673	8.70532849422729	8.52181130894903	0.102503799018485	0.488827464393229	0.761462119491523
Merged-chr13-45625954-3	chr13	45625846	45626046	+	966.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 5 of 6)	MIRb|SINE|MIR	118502.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	4.3267056428986	4.19776135663113	3.94958602124147	3.96830661423426	3.80809304976519	3.67090164643823	3.93277142752089	3.67670746265403	-0.942623952869141	0.0395480768433776	0.200274574643416
Merged-chr5-64677177-4	chr5	64677077	64677277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66478.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	6.35573822225812	6.40733433593394	6.04726066019639	6.16382467127618	5.9120381387748	6.17946768583271	6.12097201448413	6.26356508480648	-0.202265773558325	0.398771750379504	0.696903297902299
Merged-chr2-61593623-4	chr2	61593508	61593708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149324, intron 1 of 9)	intron (NR_149324, intron 1 of 9)	511.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	7.64797517571753	7.85598566131016	7.88273110117056	7.57084847453196	7.70507171608625	7.80061231427057	7.71030499282988	7.70253749211221	-0.0133101118151702	0.938555960188306	0.977731712064681
Merged-chr17-31079372-3	chr17	31079297	31079497	+	686.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	21703.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	2.80660530591629	3.06581040891777	2.94733913580084	2.57117824326359	3.05217440470107	3.51486088738401	3.17731135262003	3.07301902765382	1.49191826788928	0.017935381792031	0.118888297688115
Merged-chr4-152333190-4	chr4	152333090	152333290	+	827.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_102292, exon 5 of 5)	non-coding (NR_102292, exon 5 of 5)	-5461.0	NM_029216	269610.0	Mm.40192	NM_029216	ENSMUSG00000005045	Chd5	4930532L22Rik|AW060752|B230399N07Rik|CHD-5	chromodomain helicase DNA binding protein 5	protein-coding	3.73136264194847	3.64638683161818	3.73186101742986	4.11168534653384	3.90719234302802	3.90456996367043	3.77031941879736	3.97732499709072	0.150523632551019	0.748761417511799	0.901063951017401
Merged-chr15-53128766-3	chr15	53128667	53128867	+	607.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	217416.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	3.38172175612634	3.26623432900574	3.54554390499428	3.34724245920349	3.53879026664099	3.23807065387574	3.42558087680643	3.73257736392464	0.38516258643647	0.458616281585814	0.74144172337427
Merged-chr7-128739722-4	chr7	128739631	128739831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145955, intron 1 of 15)	intron (NM_145955, intron 1 of 15)	698.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	6.12140247031801	6.29148819109709	5.97688318594841	6.16311298265455	5.85056503063263	5.96416210780958	6.09110302794753	5.49766993539362	-0.439132395236049	0.0880316236406285	0.323660227834844
Merged-chr4-63089663-3	chr4	63089557	63089757	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028326, intron 4 of 14)	intron (NM_028326, intron 4 of 14)	64515.0	NM_007443	11699.0	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	4.46026687554346	4.47337140942029	4.42371321723623	4.68202666469773	3.54419384872055	3.65889134896828	3.95808927513223	3.91767406468436	-2.05671312478159	6.9483405184478e-06	0.000199184828740474
Merged-chr10-41887384-4	chr10	41887275	41887475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013370)	promoter-TSS (NM_001013370)	-64.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	7.39926985345056	7.56134248227719	7.5072607816033	7.49448257764812	7.5601687931933	7.59797890318025	7.81617572362988	7.53872976648234	0.182934487561106	0.290310202137878	0.602462038492102
Merged-chr1-89463295-3	chr1	89463211	89463411	+	748.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	8500.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	3.55650621457589	3.37437968358245	3.50767749332641	3.39604909043061	3.30466828115522	3.2709921082136	3.44222096706387	3.22421099156026	-0.510248449619867	0.32649725510441	0.637972505574722
Merged-chr12-111430621-4	chr12	111430526	111430726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 13 of 13)	intron (NM_001289487, intron 13 of 13)	-12035.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	7.60775992874995	7.69485037730031	7.70815320073821	7.46534783089393	7.59427115886988	7.64067793261774	7.61383987892492	7.2599833994853	-0.10391958326419	0.570642802216335	0.81018438622405
Merged-chr15-58239205-3	chr15	58239059	58239259	+	806.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-24267.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	2.64012417764256	2.37847096489929	2.46518153631204	2.1645707931141	2.28828840093955	2.28917475151129	2.25592456699428	2.33234848964252	-0.751937275666346	0.327126225773231	0.63867529942819
Merged-chr5-24842784-4	chr5	24842685	24842885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053075)	promoter-TSS (NM_053075)	-424.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	9.24856161705939	9.23719002785612	9.32892221835514	9.16018501468553	9.38374515963783	9.50405671002585	9.45018518656035	9.27120394531566	0.199606468774212	0.14999167157819	0.432369154794288
Merged-chr6-38349216-3	chr6	38349103	38349303	+	853.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 1 of 8)	B2_Mm1a|SINE|B2	5400.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	3.59517401903568	3.97859515786908	3.47883864827097	3.3121717814379	3.65697879052165	3.8227570949749	3.58154126200029	3.799662333585	0.329483702637344	0.519540244813749	0.780161932409124
Merged-chr19-8771028-4	chr19	8770944	8771144	+	897.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025791)	promoter-TSS (NM_025791)	48.0	NM_025791	66836.0	Mm.440071	NM_025791	ENSMUSG00000010097	Tmem223	0610006I08Rik	transmembrane protein 223	protein-coding	4.70289574723704	4.52920268190863	4.51062946202871	4.38958945924441	4.58787213898977	4.5542415825578	4.81432454936725	4.33038765166498	0.128757464080316	0.726484155223465	0.891094191532232
Merged-chr3-69044434-2	chr3	69044334	69044534	+	904.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025863, intron 1 of 2)	CpG	308.0	NM_025863	66949.0	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	2.94894194513669	2.72998765380978	2.80729628593872	2.71773788100674	2.83466308526135	3.47328323319422	3.47741713407999	3.24865865007133	1.96078394950709	0.00178307539870417	0.021388190732114
Merged-chr3-121819988-4	chr3	121819879	121820079	+	830.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4677.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	4.08589376976005	3.93384769267364	4.2410017847364	4.43955523528783	4.75107142912329	4.67530926327405	4.44322771724487	4.65053091734629	0.980135869137491	0.0153137482151775	0.106390214793101
Merged-chr14-70077940-3	chr14	70077874	70078074	+	878.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289927, intron 1 of 1)	CpG	179.0	NM_001289927	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	3.00993591403689	2.97241054560794	2.9442165656045	2.88579822191091	3.40712406534212	3.24495471776652	3.12146650857662	3.24374919962974	1.25588871842461	0.0235602392246687	0.142540949236948
Merged-chr4-129788901-4	chr4	129788811	129789011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31568.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	6.1697974825408	6.45256604306227	6.3314990052128	6.24992304463455	6.73551171250793	6.61591822553397	6.62735013168605	6.5664868918293	0.497194844210117	0.0188326653766971	0.122856776541831
Merged-chr4-148709638-3	chr4	148709532	148709732	+	620.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	66315.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	3.28842177291588	3.22671816379309	3.28884063613833	3.39350656739456	3.68031434308204	3.14427388450337	3.27672755060692	3.1669823693009	0.158207684690515	0.778615678342465	0.913781420202775
Merged-chr2-148491338-4	chr2	148491257	148491457	+	946.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47822.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	5.01944880069745	4.18339708778499	4.65772793909856	4.69801393711631	4.57300133763169	4.6267527305097	4.38564409805023	4.65465106280175	-0.231257138411898	0.555746522817808	0.801683759553509
Merged-chr4-46375156-4	chr4	46375056	46375256	+	911.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14267.0	NM_029086	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	4.72738499613174	4.51955389280683	4.86418196170987	4.72915122162906	4.42102719695764	4.70791863050796	4.38313595188202	4.39972024388294	-0.519309498698039	0.15154004139901	0.435236597939721
Merged-chr11-76945638-4	chr11	76945490	76945690	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178645)	promoter-TSS (NM_178645)	-66.0	NM_178645	104184.0	Mm.399785	NM_178645	ENSMUSG00000020840	Blmh	AI035728|Bh|Bmh	bleomycin hydrolase	protein-coding	4.46658203469543	4.53779046646551	4.63459647876416	4.63795006616567	4.68270759298549	4.68575205139805	4.40245816332063	4.97246078310447	0.269262068357087	0.454323988981769	0.738183144898953
Merged-chr15-27931596-2	chr15	27931496	27931696	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	B1_Mus2|SINE|Alu	94252.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	3.06851114057727	2.95901924646579	3.56375742714824	2.61341539728992	3.11008601501857	2.83722053272004	2.93212907360305	3.0672553782323	-0.420399352589133	0.538586270220891	0.791674213779382
Merged-chr1-59482032-4	chr1	59481933	59482133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008057)	promoter-TSS (NM_008057)	-114.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	8.6015965000688	8.7316772864829	8.67490969392824	8.65794490871764	8.61743759376059	8.73352769343141	8.73184526117844	8.57881973225681	-0.00252410827483323	0.985957899971624	0.994788540667462
Merged-chr14-121318446-3	chr14	121318360	121318560	+	933.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145465, intron 2 of 10)	intron (NM_145465, intron 2 of 10)	60770.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	3.67590927305919	3.77930620124205	3.57063900099293	3.99952387524857	3.3588279701374	3.37412073486688	3.50126224361016	3.67431068408527	-0.964989956848663	0.0588167277158598	0.255330416978394
Merged-chr15-77830897-4	chr15	77830803	77831003	+	849.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	11272.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	4.27595718549477	4.25849331818806	3.96158583819971	3.59895049556243	4.11555940304563	3.97787165260713	3.99445269897795	4.10366916110115	0.0277999964969825	0.9522817543574	0.983110341498473
Merged-chr13-100409276-3	chr13	100409135	100409335	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008670, intron 15 of 15)	intron (NM_008670, intron 15 of 15)	43629.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	4.73139971950776	4.75528142727506	4.84873792721381	4.35833078353498	3.50822764251843	3.63171399937942	3.49332454021342	3.64729924976813	-3.32067718108143	9.48863548146099e-10	6.12878026256726e-08
Merged-chr13-101914892-4	chr13	101914810	101915010	+	903.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146693.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.05562766714189	3.67109094242458	4.10061455106558	4.28494991769912	3.87541115666819	3.75066298587499	4.03837121746266	3.91073901328937	-0.436814712450548	0.343982392051161	0.652549843655808
Merged-chr7-16999877-4	chr7	16999788	16999988	+	870.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5300.0	NM_001101535	434130.0	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	-	coiled-coil domain containing 8	protein-coding	3.77013682828225	4.08555104718913	3.99334775268309	3.63254008998057	4.40746369071192	4.01049705254009	4.32888042491216	4.45805599518785	1.16038316150991	0.00725970776820566	0.0625288890649941
Merged-chr17-49422260-4	chr17	49422167	49422367	+	879.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	-6097.0	NM_028464	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	4.43783024590205	5.53531925228748	4.39183576277238	4.22029168346201	4.82035643898808	4.61812460145465	4.46288984522928	4.18457469774689	-0.473051687655031	0.336848250208935	0.646755546008356
Merged-chr2-124642375-4	chr2	124642274	124642474	+	973.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	-11207.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	5.29424477333486	4.83971570221798	5.06699764892135	5.49447756990644	5.35686756134401	5.13475969089001	4.8927224737483	5.83808197309522	0.265810676770114	0.467467282840018	0.747012132863453
Merged-chr5-53591229-4	chr5	53591169	53591369	+	872.9208369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359152, intron 1 of 9)	intron (NM_001359152, intron 1 of 9)	783.0	NM_001080927	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	3.74727892091694	3.7941162082003	3.69061748137968	3.56164189054684	3.79484521241973	4.02935824814521	4.0282546541876	4.35683594750205	1.03984842552688	0.02172361939464	0.135248217364679
Merged-chr17-36058499-1	chr17	36058399	36058599	+	820.75	f0_balb.idr	promoter-TSS (NM_001199967)	promoter-TSS (NM_001199967)	-128.0	NM_001199967	100529082.0	Mm.484641	NM_001199967	ENSMUSG00000079492	Gm11127	-	predicted gene 11127	protein-coding	4.09678269763249	3.68646343974402	3.89633620327086	4.21849193370481	3.25193945614615	3.10772516197131	3.06671393958959	3.36213616706743	-2.87052206430164	4.2378040408195e-06	0.000128086052578128
Merged-chr5-86935451-4	chr5	86935357	86935557	+	977.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-8954.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	5.66285251188409	5.39617566222188	6.04346285570283	6.57090236712187	5.59948205109223	5.30711021583302	5.75810006161306	5.19504789553355	-0.861493608378168	0.0157129678853786	0.108343828452326
Merged-chr2-152398914-4	chr2	152398816	152399016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011438)	promoter-TSS (NM_011438)	-870.0	NM_011438	20667.0	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	7.38399172539591	7.53718585623461	7.36499047169635	7.44583471472246	7.46454285900895	7.36719528324588	7.58534868887636	7.54037999403661	0.0732526142634753	0.671638689932253	0.864901586834458
Merged-chr16-10412125-4	chr16	10412041	10412241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011955, exon 2 of 11)	exon (NM_011955, exon 2 of 11)	203.0	NM_011955	26425.0	Mm.29037	NM_011955	ENSMUSG00000022503	Nubp1	-	nucleotide binding protein 1	protein-coding	6.79577472152853	7.13723418195945	7.15240031387284	7.01630816602492	6.80725056483639	7.09930155855503	6.97681869810517	6.9823042015445	-0.0973426491166971	0.624768547286679	0.839634476763812
Merged-chr12-111744227-4	chr12	111744122	111744322	+	983.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163388, intron 4 of 5)	intron (NM_001163388, intron 4 of 5)	-14627.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	4.8477700984124	4.76326279356748	4.36432492369639	5.22976934877617	5.06769258628032	4.9852518155433	4.96343651228012	4.80807490165538	0.198614958127619	0.597945708226953	0.825677101788393
Merged-chr2-152757231-4	chr2	152757150	152757350	+	909.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053091, intron 3 of 4)	intron (NM_053091, intron 3 of 4)	3077.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	4.48935953294092	4.71267067047291	4.4446899851679	5.0136808532856	4.56656090444035	4.70877303913429	4.47007531115886	4.93358224188176	-0.0619431555121198	0.872054862149888	0.951877155217282
Merged-chr10-117393419-4	chr10	117393327	117393527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16454.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	6.49726640230716	7.00582360301055	6.62223456822321	6.89038711505692	7.23955659602364	7.25980398606848	7.36467768468187	7.05466757438559	0.623963003801794	0.00312378773930902	0.0329746533436567
Merged-chr11-20169166-4	chr11	20169061	20169261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32251.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	6.20928630569663	6.27239606317556	5.95994679657349	6.31762156661968	6.15616208846056	5.99083688443339	6.018141815529	6.08689738259159	-0.214031892137491	0.36351344856545	0.668574361907056
Merged-chr14-33245092-4	chr14	33244997	33245197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	28274.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	6.23399956214468	6.16009402302392	6.06043208378266	6.3452081425588	5.9649695665135	5.98413825783996	5.80395657309545	5.80409495537462	-0.503697302105508	0.0353717581779063	0.186632090544438
Merged-chr7-25705890-4	chr7	25705771	25705971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011577)	TTS (NM_011577)	13182.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	7.14008493825247	7.00530284243364	7.57854777332048	6.98179337450955	7.13146369187494	7.31834596709567	7.10544868269399	7.31983748868351	0.0411519539697139	0.8476703271751	0.942372258426209
Merged-chr2-166270218-3	chr2	166270094	166270294	+	768.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-3714.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	3.12472145510949	2.73192067577486	3.12512728863364	3.22566570592021	3.0351192169831	3.11206916656999	3.05447993258258	3.33757301431256	0.266992540649886	0.662116591399111	0.859826258104016
Merged-chr8-26917765-4	chr8	26917670	26917870	+	913.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-59566.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	4.43034474609315	4.27973726919789	4.11025572546893	4.51603637710367	4.62142086609279	4.23552916721467	4.09353642800489	4.50665676884434	0.088131693708378	0.82982633815509	0.934651068478086
Merged-chr2-113305566-4	chr2	113305462	113305662	+	880.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	19830.0	NM_029232	75275.0	Mm.159484	NM_029232	ENSMUSG00000041255	Tmco5b	4930563P21Rik	transmembrane and coiled-coil domains 5B	protein-coding	3.63828195199084	3.95393635957097	3.63873180743937	4.15493942531035	3.87729264830985	3.97815782928835	3.98325962366857	3.80434398531794	0.0730367210902639	0.877836824991216	0.954314763971155
Merged-chr5-30961060-1	chr5	30960960	30961160	+	1000.0	f0_c57.idr	promoter-TSS (NM_016703)	promoter-TSS (NM_016703)	-733.0	NM_016703	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	4.35149556854931	4.64279095248342	4.25185276900337	4.28687289708547	4.80325285782762	4.70699500890943	4.96240960293628	4.72424649662066	0.906106949413539	0.0112135704604334	0.085591044724418
Merged-chr6-37223169-4	chr6	37223062	37223262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	76814.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	7.56233902078468	7.13771774057887	7.70652469804314	7.74601346160514	7.47658827000498	7.48530259354717	7.66888880454465	7.74801408517313	0.0445601545259011	0.827114868176889	0.933672322391225
Merged-chr11-5707701-4	chr11	5707600	5707800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026080)	promoter-TSS (NM_026080)	-1.0	NM_026080	64660.0	Mm.7328	NM_026080	ENSMUSG00000020477	Mrps24	3110030K20Rik|AI414579|Rpms24	mitochondrial ribosomal protein S24	protein-coding	6.75025286782729	6.87485043852176	6.2361724260063	6.65767939462777	6.7732703947256	6.99880292237538	7.13341888789453	6.94833731700487	0.43696455695588	0.0524724371556191	0.23868453503961
Merged-chr9-71162312-3	chr9	71162207	71162407	+	847.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073483, intron 1 of 6)	RSINE1|SINE|B4	326.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	3.61499459718816	3.51802867239588	3.31966230442777	2.7870642330259	4.0311556651177	3.88932997436136	3.4906808390702	3.5592690358596	1.31538896971122	0.0298100266229577	0.16652957192491
Merged-chr4-86428336-4	chr4	86428273	86428473	+	868.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029967)	TTS (NM_029967)	129930.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	3.15922335231565	3.06132360784288	3.59476350036001	3.33763337048162	3.1449997150758	3.6162166502396	3.21110195123593	3.28111655413824	0.0654868129085237	0.908829053922241	0.966100563913989
Merged-chr1-173447336-2	chr1	173447234	173447434	+	959.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 2 of 8)	L1MC1|LINE|L1	26730.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	3.20979729660855	3.10720687237123	3.26901521054775	3.72287711100029	3.48160950216901	3.19282108481362	3.25697036848732	3.01483034240472	-0.392397503617114	0.520681833096911	0.780877030797574
Merged-chr3-144049358-2	chr3	144049258	144049458	+	630.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152974.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	3.11999445669895	3.06241248004842	3.33544716479589	2.89110487903771	3.24179278423642	2.89648369527105	3.21917323072403	2.93048311463804	-0.068231255924267	0.910357235624877	0.966671146059764
Merged-chr13-99955742-3	chr13	99955603	99955803	+	622.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030026, intron 13 of 16)	intron (NM_030026, intron 13 of 16)	-55020.0	NM_001081493	27220.0	Mm.75498	NM_013732	ENSMUSG00000021647	Cartpt	Cart	CART prepropeptide	protein-coding	3.23759173060395	3.25912369305418	3.29236779581151	3.16390914164686	3.05422665963495	3.10303033206226	2.98543932415771	3.23626038947574	-0.549965189778435	0.324613024950652	0.636161998108012
Merged-chr18-67478716-4	chr18	67478606	67478806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144867, intron 6 of 6)	intron (NM_144867, intron 6 of 6)	13857.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	5.75656751767755	5.81727283933153	5.8070024433215	5.90702110794845	5.73349654227772	5.65654299581337	6.34738974122766	5.82686380490523	0.145606831783839	0.596627223390405	0.824854959359042
Merged-chr12-98238656-4	chr12	98238554	98238754	+	829.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008079, intron 7 of 16)	MTC|LTR|ERVL-MaLR	20805.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	4.21913409533323	3.63772098746723	4.17658085192523	3.99404435410594	3.99422172984882	4.05894358104434	4.39460267390008	4.1292688961112	0.338074124880376	0.44790469163759	0.73332468018769
Merged-chr11-94989849-4	chr11	94989746	94989946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1366.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	6.02561213445249	5.851253151029	5.67820486893825	5.71804777221898	5.96860782859198	5.68554156141851	5.99583332411172	5.89439905671107	0.129375846261935	0.610345884943643	0.831595076242652
Merged-chr16-33186298-4	chr16	33186188	33186388	+	902.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176840, intron 1 of 12)	intron (NM_176840, intron 1 of 12)	1217.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	4.36767712257133	4.18579651639583	4.36836245508607	4.53974998613365	4.22778772540025	4.0453779097889	4.21755630175319	4.55922747902729	-0.252042836087128	0.532711445584044	0.788231326997748
Merged-chr1-160906849-1	chr1	160906749	160906949	+	1000.0	f0_c57.idr	intron (NM_001024952, intron 1 of 19)	CpG	438.0	NM_001024952	381305.0	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	5.53825966979093	5.49786394961644	5.92576339416063	5.21094745592238	5.43638598032602	5.65888507865577	5.87442601285402	6.07746781210681	0.376661234609071	0.225119909279071	0.533502988868384
Merged-chr13-64369051-6	chr13	64368850	64369050	+	935.0277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009984, intron 2 of 7)	intron (NM_009984, intron 2 of 7)	1570.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	3.52683021886269	3.62346409728498	3.82417755675707	3.42637523395135	3.56657204781479	3.69929701475758	3.20549630498004	3.57980976270947	-0.244945934340079	0.63784177498635	0.84700085261284
Merged-chr14-27337345-3	chr14	27337246	27337446	+	847.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	1309.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	3.08233916240495	3.45683502834363	3.15172370597216	3.20937923320351	3.50109937674517	3.39390161526843	3.49003397931674	3.73656746629846	1.04082392264877	0.0499186874736372	0.23152161697309
Merged-chr2-17896211-4	chr2	17896117	17896317	+	969.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	100741.0	NM_026627	68231.0	Mm.23887	NM_026627	ENSMUSG00000062651	H2al2a	1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1	H2A histone family member L2A	protein-coding	4.33651624766932	4.48853903522001	4.58681647934579	4.64381266343908	4.75366319431869	4.21054431166814	4.52750587237625	4.28815883338818	-0.110121905614757	0.778763711682364	0.913793413129342
Merged-chr7-110184857-4	chr7	110184768	110184968	+	920.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEi|LINE|L1	-36835.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	4.21747993360583	4.21371476811707	4.16865223920739	4.23943134188668	4.8866886455922	4.39394010664085	4.2000033480406	4.59112627973527	0.800936055035599	0.0448620668767821	0.216446624972716
Merged-chr5-124536920-4	chr5	124536792	124536992	+	862.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3899.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	4.16426455947943	3.9122056668675	3.97730266646056	4.01857047966534	4.03507395661346	3.99373987524397	4.34503392309149	4.02445342632002	0.229171879974543	0.583954650740846	0.817485282428486
Merged-chr2-117378473-4	chr2	117378378	117378578	+	997.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-35601.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	4.96762604454963	4.77290624628858	4.75905841766478	4.61618267113806	4.88121073888547	4.49382281703644	4.73662698679481	5.02767868852693	0.0660831962562286	0.850219717787078	0.943497073561262
Merged-chr9-113704924-3	chr9	113704842	113705042	+	931.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164678, intron 1 of 17)	intron (NM_001164678, intron 1 of 17)	3317.0	NM_001164678	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	3.44766336858564	3.32505544629007	3.55454635093152	3.58688287346364	3.24663048378659	3.50563827294678	3.25916930259215	3.65047127123758	-0.223028394816045	0.671336853656276	0.864653685088213
Merged-chr10-99467556-8	chr10	99467466	99467666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141605.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	4.58284027692158	4.68035228137901	5.38938662997035	4.65739308071256	4.84162757088945	5.14150915594775	4.47085502738859	4.96570107763573	0.0223037290732624	0.955076951750518	0.983997312788949
Merged-chr2-157071760-3	chr2	157071669	157071869	+	986.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	7496.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	4.13813962071182	4.64140590918873	4.46105572926501	4.2960968677004	3.9184538268159	3.89331775596646	3.6954195904151	3.64222728343393	-1.6160604870939	0.000466472366877925	0.00729576721643679
Merged-chr13-45507485-4	chr13	45507396	45507596	+	922.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025508)	promoter-TSS (NM_025508)	52.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	4.56791818902325	4.5693788849734	4.88040349403974	4.57748288641021	4.35655660998013	4.33570339112441	4.28935476228446	4.52577896664373	-0.615482132675227	0.0966991083308266	0.340621855390702
Merged-chr4-134286367-4	chr4	134286301	134286501	+	920.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146156, intron 1 of 2)	intron (NM_146156, intron 1 of 2)	852.0	NM_001163794	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	4.67317901501413	4.24675787888504	4.47331452387877	4.44136596823195	4.8352259718985	4.88069981901528	4.61437190734967	4.33343030858292	0.494011488727831	0.189202654533387	0.488066531391588
Merged-chr15-86184315-4	chr15	86184253	86184453	+	854.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-1375.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	3.77025441400947	3.48785518840368	3.55991073801469	3.92166821032716	3.70101601786088	3.78701479849447	3.60203435569452	3.61401200740917	-0.0984780968352845	0.839958162101616	0.939166584762349
Merged-chr2-91483668-4	chr2	91483553	91483753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 16 of 37)	B3|SINE|B2	26122.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	5.5321927711026	5.17615674819272	5.15052429018933	5.4216773882682	5.59217290591242	5.22133975786684	5.40010350956165	5.21386425098907	0.0767379688497096	0.798137559689086	0.921955533143952
Merged-chr14-100286126-6	chr14	100286038	100286238	+	868.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136342.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	3.55342488554038	3.81777458782906	3.90452594850975	3.80338701038767	3.58534579954389	3.54830434919191	3.35820571957272	3.81151585102734	-0.595097893670981	0.2285386303229	0.537401756450403
Merged-chr10-117879369-6	chr10	117879251	117879451	+	947.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33377.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	3.81849430217807	3.76781855555353	4.10078637759291	4.00306236034742	4.03044014962361	3.7072402032707	3.69559727893229	4.05543708962767	-0.11698593684592	0.798256932432944	0.921955533143952
Merged-chr15-87071107-3	chr15	87071033	87071233	+	677.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-473166.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	2.85927146288138	2.77282189672885	2.92204591555472	2.95913841795935	2.79795437769816	2.96667473081732	3.02647229230271	2.9800469460964	0.247763830263352	0.679257586245146	0.868329272937217
Merged-chr10-37257731-4	chr10	37257625	37257825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-118799.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	5.76847903557817	6.4589371647467	6.33083614738917	6.41298315360402	6.22769417178378	6.14727091050377	6.28087351248197	5.62235308167327	-0.274970715901281	0.328682910020329	0.640138323335519
Merged-chr2-58574262-3	chr2	58574173	58574373	+	759.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289660, intron 1 of 7)	MIR3|SINE|MIR	6939.0	NM_001289660	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	3.52729522848387	3.34979718678176	3.29588214248969	3.50520275268527	3.40060956325529	3.58876729492074	3.66169136164144	3.52580176240146	0.37945704969125	0.448563229868191	0.733856919708496
Merged-chr8-126585694-4	chr8	126585519	126585719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7817.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.01000783115474	4.47392680250943	4.4626934641559	4.66203592210396	4.91659225651035	4.88284510981758	4.48752705872291	4.67004945346018	0.184488120428462	0.618456281560379	0.836000920352511
Merged-chr11-75458824-4	chr11	75458696	75458896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2743.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	7.1759143227515	7.03832170774778	7.17715848240999	7.21503128235913	7.11305123089925	7.10015156541763	6.65387397060213	6.87734651671155	-0.276665862125936	0.171065370577129	0.464162889513089
Merged-chr2-72786397-2	chr2	72786297	72786497	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_102349, intron 5 of 5)	intron (NR_102349, intron 5 of 5)	27320.0	NR_102348	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	3.19604234196855	3.03789484562246	2.99954502728133	3.20393529244764	3.54480235594751	3.36878759586594	3.30013991491021	3.4681986879915	1.11502995022325	0.0401437286171716	0.202227527764948
Merged-chr2-35718243-4	chr2	35718201	35718401	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001602, intron 8 of 13)	intron (NM_001001602, intron 8 of 13)	21569.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	4.88067106215658	4.34212881360555	5.23522294792342	5.05630852081451	4.55942680964753	4.57002594801555	4.63667930027632	4.65532830772984	-0.663084484880183	0.0839175948097818	0.315007408552128
Merged-chr6-38974045-4	chr6	38973945	38974145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	55059.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	7.06568042713822	6.77998001975796	7.40374029414453	7.17554222724886	6.55304746056357	6.54394256603155	6.60419042705402	7.35307742368191	-0.435680452214904	0.0993400137236986	0.345698779546257
Merged-chr6-140750686-4	chr6	140750590	140750790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123805.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	5.10163102532914	4.80853411095329	5.59839796464933	5.41766974233079	5.10749927422509	5.24385107905879	4.81902560592067	5.25734208836102	-0.28445328308863	0.409166283774759	0.704831627974249
Merged-chr5-54013442-4	chr5	54013360	54013560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	14937.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	6.20079351252038	6.60619681694396	6.06889370883915	6.63242370231383	6.83870328126193	6.88936954342139	6.43386425036558	6.31782308217653	0.337235700687798	0.197071385641031	0.498379618699314
Merged-chr1-39918944-4	chr1	39918848	39919048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	18035.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	5.0181028078928	5.06674198332352	5.39757860108709	5.93476722142036	5.12678245873696	4.6747649488981	5.16488316244777	5.33804839134274	-0.597857124688917	0.114334887028128	0.373931396975516
Merged-chr7-96476919-4	chr7	96476803	96477003	+	930.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-134939.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	4.2271641706416	3.97334376207902	4.59427792878307	4.19500069327455	3.79141478018714	4.00245632868267	4.11958296957541	4.34905465022522	-0.48774620037453	0.27848832098231	0.59065912393325
Merged-chr8-18950890-5	chr8	18950761	18950961	+	946.909973	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286469)	promoter-TSS (NM_001286469)	10.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	4.43607460044621	4.50197130461303	4.02176415810545	4.4608654462608	4.16810049556345	4.03161610567927	4.24975228842066	4.47261037584148	-0.330127599825083	0.422044360964275	0.714425732757276
Merged-chr2-28513192-4	chr2	28513085	28513285	+	903.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145834)	promoter-TSS (NM_001145834)	18.0	NM_001145834	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	4.33282916780095	4.32047786966206	4.20475439943944	3.90953078311549	4.37134536090375	4.2362805659305	4.1407162957247	4.0078557911454	0.0342495041736637	0.935223873305645	0.97651865331782
Merged-chr4-105640971-3	chr4	105640833	105641033	+	967.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	483586.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.03360957240401	4.12513621183594	4.16433781850087	4.48904102143066	3.61362658533578	3.72451709731456	3.59264876799334	3.66519719790412	-1.69900184341745	0.000321922049709058	0.00537132901459003
Merged-chr11-29219272-3	chr11	29219183	29219383	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_134034, exon 16 of 16)	3' UTR (NM_134034, exon 16 of 16)	27989.0	NM_025740	216618.0	Mm.128663	NM_025740	ENSMUSG00000020462	Cfap36	2300003H10|4931428D14Rik|Ccdc104	cilia and flagella associated protein 36	protein-coding	5.59359597024157	5.25466807951404	5.31000989609163	5.46896738808485	3.56613200824764	3.74384603064281	3.75010119236579	3.90587335460523	-4.75435117187266	5.86107403740487e-16	1.11546895430065e-13
Merged-chr7-24445719-3	chr7	24445618	24445818	+	811.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199013)	promoter-TSS (NM_199013)	-36.0	NM_199013	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	3.29262041073396	3.35852665959299	3.01802616370399	3.04997714596207	2.88580780111198	2.69299033151631	2.94532767166086	3.01652185158209	-1.2662659354802	0.046525835148465	0.221678989225021
Merged-chr19-34662230-4	chr19	34662144	34662344	+	973.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	21355.0	NM_008331	15957.0	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	4.75457701765536	4.96993090708887	5.54946256392897	4.8685618879299	4.60803606985507	4.93172409712869	4.47413441050613	4.62815442667922	-0.811249995315041	0.0329095702512719	0.178080454684148
Merged-chr12-76329183-4	chr12	76329042	76329242	+	808.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001101471, exon 2 of 2)	exon (NM_001101471, exon 2 of 2)	4251.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	3.97157831016266	4.01689294580974	3.75915732226175	3.6998606019121	4.20711135586372	3.62476746207825	4.33039269698831	4.19420305469338	0.691400744720099	0.134752582973729	0.408602721099257
Merged-chr1-39469216-4	chr1	39469113	39469313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357521, intron 1 of 19)	intron (NM_001357521, intron 1 of 19)	9534.0	NM_018775	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	5.42187167652183	5.47083089606137	5.97590384926031	5.8640727508363	5.4402879220946	5.22277433842451	5.58983937007032	5.68954059063694	-0.365138017311989	0.219549959871879	0.527167271411432
Merged-chr14-30190580-4	chr14	30190487	30190687	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 4 of 46)	L1VL4|LINE|L1	162899.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	4.7706593590308	4.59246219177772	4.87515275873402	4.25670630693649	4.64756144658008	4.6673323605836	4.81794807921793	4.73174275796914	0.198927331604223	0.592920365744069	0.822423445862576
Merged-chr8-111537284-3	chr8	111537202	111537402	+	905.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001168621, exon 1 of 5)	exon (NM_001168621, exon 1 of 5)	662.0	NM_001168621	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	3.37665801085543	3.15548623696573	3.43384430357689	3.38399697385606	3.50743963844429	3.60383333709043	3.42050129213408	3.53828489411664	0.594349841149523	0.23909491824216	0.549600505217823
Merged-chr17-71094017-4	chr17	71093921	71094121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 21 of 36)	intron (NM_001083934, intron 21 of 36)	74464.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	6.23711752699295	6.56764216449981	6.11530587792684	6.37682596238051	6.43703704603781	6.66019612534616	6.06249140396486	6.02192695973851	-0.0244717800809306	0.924341244415607	0.971978099765165
Merged-chr7-10494193-4	chr7	10494089	10494289	+	928.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009577, intron 2 of 3)	intron (NM_009577, intron 2 of 3)	1192.0	NM_009577	22775.0	Mm.49441	NM_009577	ENSMUSG00000030393	Zik1	-	zinc finger protein interacting with K protein 1	protein-coding	4.03043099707318	4.48110989729905	4.27740369427361	4.5911256136348	4.59807896660208	4.26063292892509	4.30219215852965	3.91597987587506	-0.170072301671198	0.699358305409823	0.878772573452614
Merged-chr13-44491078-4	chr13	44490989	44491189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51362.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	5.68343348060497	5.70297096519441	5.73582519633393	5.6642579259431	5.96046198569158	5.83402950023819	6.03515055933701	5.80509548845715	0.361337705937875	0.141067643598905	0.417798729724146
Merged-chr5-137684848-4	chr5	137684766	137684966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303266)	promoter-TSS (NM_001303266)	-113.0	NM_001303266	231801.0	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	8.23954019058177	8.30894538755404	8.26393677832616	8.09297864677604	8.41460298637702	8.34051660013658	8.30241323444558	8.09396884113018	0.0918791699970081	0.569323575991307	0.809366519988776
Merged-chr3-106545760-4	chr3	106545662	106545862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293694, intron 1 of 8)	intron (NM_001293694, intron 1 of 8)	1863.0	NM_001357818	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	6.31899800219023	6.64018603190469	6.77749748469104	6.1541870797352	6.81304500769741	6.8829055548009	6.53585968273266	6.74500209246127	0.388006559423934	0.104808126949296	0.356075493681636
Merged-chr5-122264501-4	chr5	122264398	122264598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039153)	promoter-TSS (NM_001039153)	-38.0	NM_001039153	654470.0	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	7.91756208301611	7.91254069876961	7.29962618046987	7.5488807208878	7.73824941238924	7.91921279817797	7.93438622244016	7.40251068450792	0.0932594486906536	0.667908655248169	0.862783023699855
Merged-chr9-41044773-2	chr9	41044677	41044877	+	744.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 4 of 13)	intron (NM_176860, intron 4 of 13)	34729.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	3.66297312936241	3.17624504848368	3.66355643211193	2.97464012322056	3.751593959792	3.46427506829681	3.33493349809787	3.08446793547509	0.105205969510524	0.865021235313311	0.949427865543572
Merged-chr5-140505967-2	chr5	140505867	140506067	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	intron (NM_021528, intron 1 of 1)	358.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	3.3126658221439	3.29678742400791	3.57882854268385	2.9805723278209	3.71436937705256	3.48646469409377	3.24104638047927	3.12186499176701	0.39802340095146	0.497668637233473	0.767160446248674
Merged-chr4-132786231-1	chr4	132786131	132786331	+	657.5	f0_c57.idr	exon (NM_001033308, exon 4 of 6)	exon (NM_001033308, exon 4 of 6)	10133.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	2.85767078112959	2.71066467284122	3.06711627047184	2.52600256143416	3.54024304948544	3.1165510248159	3.28927700120267	3.67486242004475	2.67854749476083	3.76404946135333e-05	0.000882190571648563
Merged-chr7-97356930-4	chr7	97356821	97357021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14696.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	6.36618445155534	6.47156458857444	6.34915305400301	6.65379086220305	6.30763621117907	6.17213079970512	6.53334824184884	6.43285662271382	-0.167185323995198	0.460613719383364	0.742687499720882
Merged-chr12-25097980-4	chr12	25097874	25098074	+	847.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1882.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	3.58114487218712	3.80534231888799	3.86655501116188	3.73116776670323	3.83278490571352	4.08889613949401	3.90006112340466	4.3304327974043	0.826874078811148	0.0676532102973884	0.277637254843169
Merged-chr3-144617936-4	chr3	144617832	144618032	+	912.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47505.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	4.01260026407977	4.08124850297395	4.26750041573335	4.00773502331499	4.0946038618607	3.68819879955032	3.55853532389604	4.01076927109486	-0.615889164343127	0.189944778789871	0.489060568257705
Merged-chr10-22001350-2	chr10	22001250	22001450	+	918.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	6684.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	3.04808168561726	3.52290590895632	3.10801660675147	3.17294009049063	3.14443761598451	2.88519444170273	2.91161908609302	2.77808708894889	-1.16489251527095	0.0700923521366621	0.283375186455496
Merged-chr17-45471943-2	chr17	45471843	45472043	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357832, intron 1 of 6)	intron (NM_001357832, intron 1 of 6)	2995.0	NM_027649	71020.0	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	2.7723467525488	2.83122622744904	2.83374386771074	2.41104966946802	2.76107706841151	2.7483125116532	2.93506125083257	2.49503870073928	0.120299348199614	0.862847590190722	0.948358249906354
Merged-chr2-120742561-4	chr2	120742460	120742660	+	951.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024856, intron 15 of 15)	intron (NM_001024856, intron 15 of 15)	-11043.0	NM_026891	68968.0	Mm.2289	NM_026891	ENSMUSG00000027284	Cdan1	1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI	congenital dyserythropoietic anemia, type I (human)	protein-coding	4.6886962657904	4.86493754328474	5.10011207267828	5.242839269893	4.5871614558948	4.39472273170342	4.66769597256685	4.83840772902512	-0.774111970975781	0.0326197176504889	0.176978666607601
Merged-chr2-103967060-4	chr2	103966990	103967190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142337, intron 1 of 3)	intron (NM_001142337, intron 1 of 3)	-2467.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	6.46219563589318	6.72118219542466	6.62334827065166	6.87899339562886	6.24996973941475	6.22160737554802	6.44713236052325	6.29504677913814	-0.572144563594677	0.0101649367876171	0.0798333924314021
Merged-chr5-66005490-4	chr5	66005381	66005581	+	919.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1196.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	4.63364480280036	4.66184373761897	4.37513821866799	4.713189058753	5.02536389058832	4.45573535826283	4.68802837630774	4.46466607824588	0.184144430524325	0.626821495977097	0.84078253767509
Merged-chr19-41092095-4	chr19	41091983	41092183	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011904, intron 17 of 20)	intron (NM_011904, intron 17 of 20)	-14970.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	4.07894256861093	3.83076559688753	3.97888531103598	4.53558282188304	4.3023618376669	4.04776149790837	4.3210440323494	4.02785296319858	0.074000280802477	0.872498705782498	0.952143892355576
Merged-chr2-4601472-3	chr2	4601361	4601561	+	778.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 8 of 11)	intron (NM_001177844, intron 8 of 11)	41707.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	3.72224760332866	3.53447030817146	3.86747581229835	3.52988162010429	3.64789838908172	3.78922336674759	3.54635039964067	3.81872429246848	0.129702991005838	0.785499229210623	0.916512566674706
Merged-chr13-23816315-4	chr13	23816201	23816401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144836, intron 5 of 11)	intron (NM_144836, intron 5 of 11)	9274.0	NM_144836	218103.0	Mm.24030	NM_144836	ENSMUSG00000036110	Slc17a2	C730032N17Rik|NPT3	solute carrier family 17 (sodium phosphate), member 2	protein-coding	5.91487702117862	5.78747411538615	5.6553585818165	6.16141013506142	5.45251105075471	5.60390296568236	5.77457199795108	5.51266561485337	-0.537847058598093	0.0511213472935954	0.234638017733481
Merged-chr8-70903274-4	chr8	70903180	70903380	+	848.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2694.0	NM_173013	270058.0	Mm.248559	NM_173013	ENSMUSG00000019261	Map1s	6430517J16Rik|Bpy2ip1|Map8|Mtap1s|VCY2IP1	microtubule-associated protein 1S	protein-coding	3.88337108956352	3.73794600916145	3.77312074495435	3.75823440968507	4.43759824675014	4.15892369901245	4.01673185344682	4.20819125114726	1.16853503621609	0.00567882259479966	0.0522238906298766
Merged-chr7-126643413-4	chr7	126643315	126643515	+	990.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-5894.0	NM_029339	75565.0	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	5.02675645873225	5.08212225989185	4.99520683342806	3.69246251678619	5.04702440299032	5.03249692033972	4.79602889776657	4.92435935539742	0.26943690264153	0.563100016653624	0.806099836800376
Merged-chr3-149110268-3	chr3	149110182	149110382	+	670.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-155647.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	3.57477655524115	3.59749438912669	4.03685207585446	3.32810040263954	3.00839139317726	3.27716472081475	3.28133152368865	3.08959191337148	-1.79419759175527	0.00279147091627136	0.0302058541120826
Merged-chr1-53784440-4	chr1	53784331	53784531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133810, intron 1 of 7)	intron (NM_133810, intron 1 of 7)	784.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	5.58775362669695	5.3801340066978	5.77134355683568	5.64226626545621	6.00506421718977	5.73767575864043	6.07855770867239	5.94783675015233	0.57055403135877	0.0274016986981188	0.157816177426445
Merged-chr10-94148266-4	chr10	94148214	94148414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011629, intron 1 of 13)	CpG	383.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	6.00304239854051	5.88366116063975	5.6756277694725	5.48973561443117	6.06024983082866	5.8785035587757	5.86627309259034	5.91443259710133	0.287079813973413	0.277618558144029	0.589700641340894
Merged-chr1-62706404-6	chr1	62706326	62706526	+	832.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 1 of 16)	CpG	3109.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	3.94453903301905	3.7847465191765	3.63955899815231	3.88952670271435	3.60253679005345	3.63578932499158	3.88211977593405	3.98711437812572	-0.119530483345161	0.797865551490111	0.921862017583033
Merged-chr1-91168187-3	chr1	91168060	91168260	+	772.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033408, intron 13 of 15)	intron (NM_001033408, intron 13 of 15)	-11662.0	NM_016894	51801.0	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	3.57743980539239	3.47878630291914	3.52746181815428	3.94929516751389	2.98437038366687	3.28698077768001	3.29107551598014	3.17302328323542	-1.76955043110579	0.00226251522087218	0.0257340317843498
Merged-chr7-63910415-2	chr7	63910303	63910503	+	736.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-6454.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	2.77925141870378	2.67755656110552	3.00187653916934	2.35491425544924	2.43731855366204	2.69199931589619	2.57568490129452	2.71611380438143	-0.558180547949972	0.441129237457796	0.728396857622944
Merged-chr6-29527049-4	chr6	29526958	29527158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311083, intron 1 of 9)	CpG	433.0	NM_012057	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	6.4894927100503	7.35942988624127	6.83305302100782	6.06958166841887	7.41100646173019	7.60254826082913	7.34363052566625	6.69261056171109	0.727727271513724	0.019963254174615	0.127852753039306
Merged-chr7-15948552-4	chr7	15948461	15948661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153068)	TTS (NM_153068)	-2453.0	NM_133831	68077.0	Mm.277634	NM_133831	ENSMUSG00000041560	Nop53	5330430H08Rik|9430097C02Rik|AU041936|AW536441|Gltscr2|PICT-1|R74911	NOP53 ribosome biogenesis factor	protein-coding	5.80444672441931	5.73087656626737	5.55270171041792	5.71106701077588	5.55860160849002	5.85909744767524	5.60558293967708	5.62994750453724	-0.0718113988139703	0.782682948374269	0.915314048834832
Merged-chr12-59130356-4	chr12	59130240	59130440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146034, intron 1 of 24)	intron (NM_146034, intron 1 of 24)	592.0	NM_001165254	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	7.26852779877331	7.37995937540516	7.41143992702998	7.22699277218487	7.09269435212401	7.5194941033699	7.55208664044707	6.94990650516871	-0.028203567959726	0.893667734423179	0.960319159696255
Merged-chr5-143471729-4	chr5	143471630	143471830	+	763.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 2 of 14)	intron (NM_144915, intron 2 of 14)	7237.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	3.19856634541096	3.62016200176238	3.06888130438852	3.38823212724823	3.39715532626642	3.43036208571763	3.36168364730868	3.31686825410444	0.123186951142564	0.822640312169221	0.932143478460956
Merged-chr2-91096244-2	chr2	91096144	91096344	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011355)	promoter-TSS (NM_011355)	-434.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	3.14035960105575	2.92452208307141	3.02924178954442	2.8725562610269	3.07054204673228	2.87836506966039	2.76471709444597	3.08454228694078	-0.120972191147023	0.842188479210645	0.940110307562683
Merged-chr6-87537046-4	chr6	87536916	87537116	+	964.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3757.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	4.47053763767229	4.31849578997026	4.38768327271372	4.44925101290582	4.35160292479277	4.47186791837246	4.41008898703951	4.46838098651349	0.0281035830631828	0.938673900562126	0.977759950372676
Merged-chr17-46835626-4	chr17	46835519	46835719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-4206.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	5.61803417483785	5.67389360514021	5.76521944098942	5.4589497065036	5.69213301158298	5.47549875891628	5.78071469430342	5.2255147890647	-0.0931744538795587	0.743792639604727	0.899081536799267
Merged-chr10-30773566-3	chr10	30773446	30773646	+	828.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	29780.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	3.38983406290968	3.42888825070608	3.76012110992565	4.09304049228533	3.18658161301626	3.50562324196405	3.25179011294476	3.61229512430327	-1.03322645196116	0.0717270457635848	0.287680136947439
Merged-chr2-90521302-2	chr2	90521202	90521402	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-42128.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	2.77443146246984	3.01102884793666	2.70309072911249	2.36826561587404	3.21126190305829	3.08187979910103	3.01604748964817	2.96782940449013	1.52024416375307	0.028590209484998	0.162321330536227
Merged-chr14-66847298-3	chr14	66847215	66847415	+	932.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	21285.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	4.5960951526274	4.10785272325363	3.96747172525679	3.71795574846537	3.83311749300011	3.49104603285481	3.7988910703546	3.64000748366858	-1.20831559278604	0.0205232481814363	0.130233888644012
Merged-chr1-58797552-4	chr1	58797434	58797634	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009812, intron 1 of 8)	intron (NM_009812, intron 1 of 8)	2160.0	NM_009812	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	5.77018500503798	5.35294663484225	5.47153848760559	5.27283052170865	4.95270962866795	5.06631160257579	4.97954010830241	5.20809929723445	-0.769748566530326	0.0134196210619856	0.0971813213522304
Merged-chr5-35106142-3	chr5	35106068	35106268	+	856.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013587)	promoter-TSS (NM_013587)	-471.0	NM_013587	16976.0	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	3.36163271567766	3.61160401264397	3.89580725442091	3.83009605027682	3.68884125262254	3.66219600961155	3.64175118120989	3.60058484641598	-0.149860882536801	0.761301000004507	0.906512173824769
Merged-chr2-27306911-3	chr2	27306812	27307012	+	943.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 3 of 29)	L1MD|LINE|L1	-59609.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	3.79005089050537	3.46109666908417	3.69337865914153	3.85387347397837	3.72641133491229	3.39282927592236	3.51895529477668	3.69125477524544	-0.369369708965832	0.459254840217556	0.741876410408855
Merged-chr3-69126052-4	chr3	69125932	69126132	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008467, intron 1 of 16)	intron (NM_008467, intron 1 of 16)	1060.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	4.76131811091616	5.15499683279432	5.6489476389439	5.03254219994498	5.12849681874844	5.24980011198228	5.17996707852298	5.29256514796031	0.0539130399430235	0.872900473140252	0.952341117683231
Merged-chr4-117019421-4	chr4	117019330	117019530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355225)	promoter-TSS (NM_001355225)	28.0	NM_001111277	108067.0	Mm.34612	NM_175135	ENSMUSG00000028683	Eif2b3	1190002P15Rik	eukaryotic translation initiation factor 2B, subunit 3	protein-coding	6.39676796111242	6.24388734368049	5.94036574940525	6.28352585953734	6.23360525624458	6.25279822144247	6.06679609967556	6.19513792356953	-0.0630953513923528	0.787191490227004	0.917436275385072
Merged-chr5-135149137-2	chr5	135149037	135149237	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_013763)	promoter-TSS (NM_013763)	-574.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	8.04014572162069	8.28014418339725	7.64132927523193	7.7852962733013	8.10629518205887	8.28950458531833	8.13387779577242	7.9684823413163	0.21836315316474	0.26415722702813	0.576312589873508
Merged-chr4-11489250-4	chr4	11489149	11489349	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081183, intron 1 of 24)	intron (NM_001081183, intron 1 of 24)	3291.0	NM_001347055	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	4.09749963771484	4.01603686925267	4.27202239082692	4.16575562291119	4.08053593075222	3.96204366920482	4.1693435587877	3.99906595545628	-0.219574980157849	0.592546142945301	0.822240801417361
Merged-chr2-77946485-4	chr2	77946377	77946577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290740)	promoter-TSS (NM_001290740)	-121.0	NM_030560	80744.0	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein	protein-coding	5.04947142482449	4.82377726754622	5.52266327161506	4.8229827440359	5.35571051331401	5.19190331946666	5.63293606257391	5.24496260120298	0.546938079994186	0.104365861321772	0.35521721623021
Merged-chr3-121766160-3	chr3	121766068	121766268	+	954.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008991, intron 20 of 22)	intron (NM_008991, intron 20 of 22)	42631.0	NM_010171	14066.0	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	3.20751735303237	3.34272396054314	3.43060712402601	3.6179386587107	2.94525873160392	3.12100199622393	3.19659188407761	3.37655204409619	-0.954017585612145	0.0992816628612351	0.345630904861579
Merged-chr3-132154449-3	chr3	132154356	132154556	+	970.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	69164.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.84847894830235	3.81084920977295	4.05909888749377	4.47770256257373	4.22261119070866	3.91158534075513	4.22051724396492	4.31846930695434	0.201030647864914	0.6684444556339	0.862958336946864
Merged-chr4-134760998-5	chr4	134760915	134761115	+	901.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	6989.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	4.85207454055241	4.50574413840697	4.88561405226235	4.80671035759604	4.29220329848646	4.35202816720216	4.53423654330256	4.81601614054249	-0.569765505881575	0.128856803013358	0.399380073270456
Merged-chr7-30232260-1	chr7	30232160	30232360	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_001360648)	promoter-TSS (NM_001360648)	-63.0	NM_025548	66411.0	Mm.27947	NM_025548	ENSMUSG00000006095	Tbcb	2410007D12Rik|AU041393|CG22|CKAPI|Ckap1	tubulin folding cofactor B	protein-coding	6.36067395584276	6.14254497493182	6.28713164649114	5.98263866412081	6.56462702786609	6.76807382291806	6.23559452404279	6.82114801181603	0.633641521063221	0.00883341973828376	0.0721602150878911
Merged-chr19-59072048-4	chr19	59071945	59072145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 1 of 16)	intron (NM_001114312, intron 1 of 16)	4024.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	6.46915801399988	6.13309828444407	5.94574330819091	6.19320290704038	6.27319636650856	6.31450652363231	5.68854536100322	5.71333566134461	-0.247540944411134	0.376572186843601	0.679270057030434
Merged-chr2-102057575-1	chr2	102057475	102057675	+	633.0	f0_balb.idr	intron (NM_178886, intron 4 of 5)	intron (NM_178886, intron 4 of 5)	128885.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	3.08747687857556	2.91564150262782	3.13925368482685	3.30465929022588	2.4343553529679	2.60901936468682	2.57584622363192	2.58126240190586	-3.52773736871382	6.34975261832671e-05	0.00138555806750422
Merged-chr10-87859641-2	chr10	87859541	87859741	+	809.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111275, intron 1 of 3)	intron (NM_001111275, intron 1 of 3)	589.0	NM_010512	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	3.30773514911474	3.23707005986311	3.19137134384404	3.03822407153913	3.27798712555684	3.36386410938005	3.40086353289983	3.24938774645445	0.508349657821938	0.338790322554173	0.648145150521291
Merged-chr9-58627395-4	chr9	58627287	58627487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357751, intron 3 of 8)	intron (NM_001357751, intron 3 of 8)	45147.0	NM_001357751	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	5.12962794751055	4.86857277194314	5.13049026803048	5.53267528619662	5.41444906925631	5.20220571040418	5.1055406103524	5.42451639627003	0.160219790027732	0.625914043436066	0.840129896434535
Merged-chr11-54091862-4	chr11	54091750	54091950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9074.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	7.18974836967	7.44564882076676	7.20242426847485	7.19360773794897	7.39677144500467	7.62628372415485	7.24333357577162	7.39676596956806	0.21389837844646	0.254812862150892	0.566310450490533
Merged-chr1-162571579-4	chr1	162571445	162571645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016796, intron 1 of 7)	CpG	717.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	7.6967903531198	7.61682438244332	7.6736072257974	7.58040581476898	7.42708487663901	7.40068503807989	7.94591917445107	7.69283971927383	-0.00782565593397348	0.967587060195819	0.988556045979739
Merged-chr11-117177476-4	chr11	117177380	117177580	+	939.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22181.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	4.64731643179717	4.7876128399768	4.72418590546391	4.36189613292964	4.84868543069352	4.41827677949808	4.70175443528389	4.72104960351386	0.139241638093735	0.704160376345216	0.881131997747589
Merged-chr9-118589468-4	chr9	118589341	118589541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17268.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.02397476700341	4.76823314529093	4.88597420548007	4.8509860978559	4.92706910907721	5.02325958780075	5.00033232020939	5.11625178363819	0.265675995731368	0.39645244255592	0.69519327480908
Merged-chr13-105306196-3	chr13	105306104	105306304	+	796.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11719.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	4.17841308204627	4.01212253659937	4.35335663431947	4.46993744887593	3.97132543615076	4.15493834415005	4.25004885295591	4.39056002463863	-0.203748805612868	0.627434222782739	0.841152306163645
Merged-chr3-31134845-4	chr3	31134737	31134937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-15083.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	7.15370204671878	7.75435033618443	7.5649310335204	7.36048754484649	7.50304716228517	7.32077317617298	7.36440195281596	6.64857369115364	-0.300014355139175	0.217720505071047	0.524670033822185
Merged-chr4-152140632-4	chr4	152140514	152140714	+	793.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207687, intron 2 of 15)	intron (NM_207687, intron 2 of 15)	-4289.0	NM_207690	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	3.77639691698111	4.2886815818244	3.89095246599888	4.02003319910059	4.16742637688453	4.16931327456159	4.16479798628293	4.22373411433659	0.431463163555566	0.307275422834549	0.619485563981771
Merged-chr9-116077665-4	chr9	116077572	116077772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	97691.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.43195655248781	5.63565656891058	5.8547917624253	5.37610333947329	5.65109597523038	5.27922717808909	5.5701822314109	5.51450578860009	-0.0975357786824941	0.735337315033768	0.895522007062614
Merged-chr1-155810243-3	chr1	155810152	155810352	+	691.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024945, intron 1 of 11)	intron (NM_001024945, intron 1 of 11)	2647.0	NM_023268	104009.0	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo	quiescin Q6 sulfhydryl oxidase 1	protein-coding	3.38652424491405	3.20958404455985	3.63343308057192	3.89768816628853	2.89784522958943	2.97128044857574	3.37302199093927	2.9374712232278	-1.96532174851016	0.00269479267344451	0.029378354108957
Merged-chr11-108353139-3	chr11	108353017	108353217	+	757.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9229.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	3.56891969461075	3.42060253884543	3.75055817520089	3.99851368992786	2.95991418689702	2.91172732370043	2.87600097994457	3.10531482765872	-3.19692761818245	6.45445797654229e-06	0.00018637803826057
Merged-chr13-51741023-4	chr13	51740928	51741128	+	940.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281880, intron 2 of 16)	intron (NM_001281880, intron 2 of 16)	52719.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	4.50092072731534	5.34488283151889	4.45277257819794	4.51069627982943	5.13252387554327	5.0134149763094	4.98727367031077	4.94214375596644	0.518151421714323	0.185500080358326	0.483492995709299
Merged-chr17-15829371-1	chr17	15829271	15829471	+	564.0	f0_balb.idr	Intergenic	Intergenic	-2785.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	3.16317988422325	3.10495104024938	3.2202507860738	3.08805560719272	3.22517706588821	2.8658504127217	3.20768019324455	3.2726330246403	0.0588149808054593	0.917772274795042	0.969719335386341
Merged-chr4-63508411-3	chr4	63508330	63508530	+	897.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-12439.0	NM_001008791	73750.0	Mm.300397	NM_028640	ENSMUSG00000039137	Whrn	1110035G07Rik|AW122018|AW742671|C430046P22Rik|Dfnb31|Ush2d|wi	whirlin	protein-coding	3.88437453871347	3.68972169525582	3.66324893456263	4.03768127552169	3.87611417324409	3.84238138722755	4.42850595029275	3.93261153834962	0.548666614096829	0.249270552134194	0.560328612484111
Merged-chr9-124071704-4	chr9	124071608	124071808	+	990.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30475.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	5.51642282583601	5.47739292210649	5.96453939119424	5.74364143714529	5.00688366653408	5.66518239028636	5.6225904198535	5.81354052020025	-0.237101298690032	0.454650877565456	0.738427719663014
Merged-chr6-114395520-4	chr6	114395400	114395600	+	910.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2436.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	4.16088863895749	3.99215569209173	4.44397734279978	4.05177006017058	4.16558503676496	3.97897483650516	3.89747455656494	4.28767968457951	-0.17986332415988	0.675328783274874	0.866674373732913
Merged-chr7-118740709-4	chr7	118740633	118740833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027815, exon 1 of 31)	exon (NM_027815, exon 1 of 31)	462.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	6.93797590057487	7.25306832370302	7.06649454491033	6.74684822122719	7.33358390571575	7.24333110072621	7.23104107240731	6.98673467392111	0.279521364738343	0.180825207994529	0.477214692812375
Merged-chr2-38944938-3	chr2	38944836	38945036	+	978.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172854, intron 2 of 7)	intron (NM_172854, intron 2 of 7)	12956.0	NM_172854	241327.0	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	4.42337013650752	4.29900694491165	4.4985732852475	3.99246908746552	4.34240324522342	4.03471062037053	4.00452471767187	4.07007194843699	-0.43563421143332	0.313233161135993	0.625166179930743
Merged-chr4-108428460-4	chr4	108428340	108428540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21727.0	NM_024198	67305.0	Mm.20164	NM_024198	ENSMUSG00000028597	Gpx7	3110050F08Rik|AI327032|GPX6	glutathione peroxidase 7	protein-coding	6.38193104023705	6.57369918051292	6.75277474648237	6.89255927825626	6.6644686325705	6.54062460764598	6.45702897547038	6.69100001287994	-0.121725609478465	0.587240849823343	0.819100437669827
Merged-chr10-117417518-4	chr10	117417392	117417592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29943.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	6.67304633455119	6.93522708956509	6.61001990059231	6.68283844152196	6.7192754458067	7.052527405765	7.00301568691484	7.04523381682831	0.31240132929226	0.133288291576752	0.406588124888216
Merged-chr17-28693293-4	chr17	28693202	28693402	+	879.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	734.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	4.15365962561082	4.03335167510548	4.20194768096821	4.17995633271321	4.66908971699033	4.50561410412948	4.087632599791	4.2452991430626	0.631385778309038	0.120552449406204	0.38436217160966
Merged-chr13-81350355-4	chr13	81350243	81350443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 83 of 89)	intron (NM_054053, intron 83 of 89)	282801.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	5.79114772310935	5.51865000258212	6.09383631513765	6.52876518714458	5.91807790690974	5.60911772583927	5.52389078612354	5.57688423653087	-0.616413745351144	0.0556342800676272	0.246897713132592
Merged-chr9-124103432-4	chr9	124103310	124103510	+	851.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009915, intron 1 of 2)	intron (NM_009915, intron 1 of 2)	1227.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	3.79506011536567	3.95825306040684	3.84923734092121	3.96433272805467	3.89063913197988	4.12081360048146	3.8337835421599	4.12880533227699	0.25980825409363	0.548491667842554	0.79747300484854
Merged-chr2-131909935-4	chr2	131909852	131910052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011170)	promoter-TSS (NM_011170)	24.0	NM_001278256	19122.0	Mm.648	NM_011170	ENSMUSG00000079037	Prnp	AA960666|AI325101|CD230|PrP|PrP<C>|PrPC|PrPSc|Prn-i|Prn-p|Sinc|prP27-30|prP33-35C	prion protein	protein-coding	7.04386711228736	7.07750156088578	7.21492347662232	6.56202879945426	6.92061118606643	7.14701114592072	7.15747934024276	7.07597112260468	0.12881679548306	0.563665613873264	0.806428731514002
Merged-chr1-36962443-7	chr1	36962363	36962563	+	971.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22936.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	4.27279838160862	4.15312807247369	4.59588039070423	4.61474472267113	4.73871533567304	5.05624589708431	4.86251396173796	4.74640614272579	0.88414845574675	0.0184098835058763	0.12118719116478
Merged-chr14-65167065-1	chr14	65166965	65167165	+	550.0	f0_balb.idr	Intergenic	Intergenic	-68959.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	3.54641046085727	3.43759015273842	3.40108767454722	3.1549990134031	3.17037116905007	2.93638867107645	2.96950648113713	3.29168622842103	-1.08729370182376	0.0680093630077755	0.278385096873337
Merged-chr2-117412311-4	chr2	117412309	117412509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69532.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	4.65520919785281	4.68257173934345	4.48789585117573	4.23366996242156	4.8885090608349	4.86742103741252	4.67255741677837	4.83580657048242	0.671311949392411	0.0599245501847028	0.258288092382037
Merged-chr3-139049062-4	chr3	139048994	139049194	+	840.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 2 of 13)	intron (NM_001356388, intron 2 of 13)	26107.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	4.17905114595017	4.0887219966298	4.30759911810212	4.45751660428252	4.22562185847098	3.99904496431865	4.02078694918517	3.93098277361111	-0.560198549747291	0.184233428301834	0.481566019629658
Merged-chr7-28374872-4	chr7	28374756	28374956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-2194.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	5.87851581918434	5.89863860711774	5.78087506985729	5.69585190729079	6.10718537308073	6.29110692967839	5.87296589764317	6.31181988690525	0.547150694180366	0.0269008822914412	0.155947005160655
Merged-chr16-33530768-3	chr16	33530671	33530871	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 1 of 11)	intron (NM_001083902, intron 1 of 11)	12176.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	3.60255392776186	3.46892014351601	4.29488878426832	4.38667713934101	3.21913514237339	3.60348907933174	3.47046386531772	3.2806318707718	-1.92345865229655	0.00117328956538953	0.015295527101623
Merged-chr16-92301657-2	chr16	92301557	92301757	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138743, intron 1 of 3)	intron (NM_138743, intron 1 of 3)	354.0	NM_138743	68936.0	Mm.21698	NM_138743	ENSMUSG00000051989	Smim11	1190017O12Rik|C21orf51|Fam165b|Smim11a	small integral membrane protein 11	protein-coding	3.88915443334329	4.15567522696301	3.47683302971241	3.8810352968358	4.07084937381566	3.84749617803918	3.97002217616819	4.11830004412714	0.360007344860618	0.441252587804012	0.728396857622944
Merged-chr7-90442754-4	chr7	90442699	90442899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145151)	promoter-TSS (NM_145151)	18.0	NR_073438	233490.0	Mm.29496	NM_145151	ENSMUSG00000051451	Crebzf	1110034C16Rik|6330417B10Rik|LAZip|LAZipII|SMILE|Zf	CREB/ATF bZIP transcription factor	protein-coding	7.85727249784081	8.03345845344771	8.02827947452168	7.81545063162617	8.19905126656778	8.16521495951594	7.9766450708823	7.94090582618971	0.187864051994761	0.262148279072393	0.574100843086496
Merged-chr17-34079791-4	chr17	34079715	34079915	+	956.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12564.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	5.14869561867799	5.0462559102974	4.47522341132781	4.28937687318075	5.42786315175134	5.19468416885199	5.29553473260219	5.14597804934105	0.956418998392789	0.0105605480984536	0.0821288616850633
Merged-chr19-57611775-4	chr19	57611705	57611905	+	962.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181415, intron 1 of 28)	CpG	771.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	4.66402648155794	4.80394672131118	5.06551450456905	4.40490009370628	4.65316961661303	4.67378263490081	4.60341708745709	4.58070199438013	-0.239189788204851	0.520048788365422	0.780488058121568
Merged-chr7-90133471-4	chr7	90133376	90133576	+	921.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	3263.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	4.06083792722614	4.04873953766367	4.51676432681343	4.45053578013906	4.34256099988502	4.68602897705386	4.33373924204717	4.43481512723299	0.364619074101192	0.369464156267453	0.673692529630015
Merged-chr13-52071373-4	chr13	52071256	52071456	+	824.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-25385.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	4.03144110995875	3.85793688847373	3.4712151215941	3.46129091968219	3.81036480233716	3.87684127471128	3.57922541469966	3.7543342208579	0.119712850636027	0.810482675824799	0.926833751678515
Merged-chr8-123224849-4	chr8	123224737	123224937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194446)	promoter-TSS (NM_194446)	-4.0	NM_194446	234854.0	Mm.190984	NM_194444	ENSMUSG00000033862	Cdk10	BC017131	cyclin-dependent kinase 10	protein-coding	5.31516155610962	5.27403393728901	5.08924370478626	4.94730629527671	5.38830483824672	5.51852142442233	5.42885085532086	5.31237750113499	0.479704241278906	0.101853550673521	0.350255222713201
Merged-chr1-170924712-4	chr1	170924607	170924807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160215, intron 1 of 4)	intron (NM_001160215, intron 1 of 4)	2876.0	NM_145141	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	5.73043828497615	5.75589079865203	5.68020526819007	5.91303356448744	5.92672414543616	5.85548006013514	5.8215516700777	5.64988944235732	0.0597240267456015	0.813910494902468	0.928109035433692
Merged-chr3-115887913-4	chr3	115887851	115888051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027193)	promoter-TSS (NM_027193)	108.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	7.07852018873155	7.42341746102439	7.19243545212375	6.62575111011394	6.92539638346208	7.13291683313051	7.03225479672301	6.75425165859204	-0.186604453369006	0.433878622415103	0.723256357491443
Merged-chr19-44343681-2	chr19	44343578	44343778	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183216, intron 5 of 5)	intron (NM_183216, intron 5 of 5)	10352.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	2.65819836995213	2.56189807994716	2.65856343005315	2.30476582288167	2.62818530593168	2.42609940956498	2.46058618367497	2.39718797455072	-0.332900807981308	0.645559287797934	0.850934142345746
Merged-chr4-124703965-7	chr4	124703942	124704142	+	849.5618900000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010213, intron 1 of 5)	(TG)n|Simple_repeat|Simple_repeat	3343.0	NM_010213	14201.0	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	3.63345457252416	3.50544208143966	3.6912951748836	3.58749007805611	4.03489034777044	4.02196608087783	3.56089598034235	4.3015713189593	1.15459902580008	0.0154294612318718	0.106969282265842
Merged-chr4-150265123-2	chr4	150265051	150265251	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16765.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	2.34982266235474	2.43979374888693	2.34997928173719	2.60444677238975	2.79501353609929	2.74968976841306	2.81437921140523	3.03369023241799	2.01099136642368	0.00969845361775709	0.0772277611130224
Merged-chr11-70650595-4	chr11	70650500	70650700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316728, intron 8 of 9)	intron (NM_001316728, intron 8 of 9)	3313.0	NM_027445	70510.0	Mm.261818	NM_027445	ENSMUSG00000040746	Rnf167	0610010G05Rik|5730408C10Rik|AU019305|AV328608	ring finger protein 167	protein-coding	5.03900062490899	4.94678480753804	4.63690690963483	4.72324995004201	4.98109368335212	5.07989084519005	4.98347206911325	4.44997238211896	0.11547445212778	0.745219675458258	0.899431814827356
Merged-chr13-119818029-4	chr13	119817937	119818137	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	12180.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	5.32000108097628	4.93883534497214	5.2348459230393	5.24383547860212	4.9496543307122	4.99521426961811	5.0522579573064	5.20119888772143	-0.273490027789272	0.375965121025127	0.67884684177082
Merged-chr10-57760909-4	chr10	57760789	57760989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-24034.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	6.31089777687906	6.4195260793334	6.39956503339489	6.69700424048001	6.06264875451513	6.11277848286206	6.06367552003509	5.95428472424188	-0.655216052104432	0.00497736756444266	0.0473831812049571
Merged-chr11-69580340-4	chr11	69580248	69580448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011640)	promoter-TSS (NM_011640)	-11.0	NM_011640	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	6.12132578313601	6.44277260125975	5.89418521230746	5.77436623344249	6.35260255631772	6.59343240840612	6.17150855177786	6.34653608957155	0.452189187246704	0.0847279899009482	0.316759958323353
Merged-chr15-80225397-4	chr15	80225269	80225469	+	918.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8711.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	4.1097823585366	4.52633975956866	4.26315267793675	4.42600445354724	4.66982752111894	4.43853406796227	4.46313335771661	4.59677220113188	0.45571693401429	0.2284169512133	0.537286714307472
Merged-chr5-143065378-3	chr5	143065284	143065484	+	889.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	47636.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	3.18549044280716	3.08217207966392	3.64224623132722	3.41686993246034	3.17957686426655	3.02508721010713	3.17460715489209	3.30062044150058	-0.655252455447023	0.257635796875108	0.569440392056059
Merged-chr5-77217444-3	chr5	77217332	77217532	+	881.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5961.0	NM_001289768	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	3.68201138836684	3.70796569607438	3.55623184049542	3.97694003161041	4.35691077505044	4.07771187017695	3.93755013293079	4.29387154748045	1.13299609197895	0.0161924515699441	0.110599991392098
Merged-chr2-181659804-4	chr2	181659745	181659945	+	914.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11795.0	NM_009236	20672.0	Mm.264904	NM_009236	ENSMUSG00000046470	Sox18	AI385749|Ra|Ragl	SRY (sex determining region Y)-box 18	protein-coding	4.8685489939923	4.93587923898684	5.14953366051966	4.63165066827946	4.7601066474307	4.64190628463211	4.48915436930166	4.7943832776088	-0.446904290820778	0.210062906827144	0.514524007056066
Merged-chr19-29366367-4	chr19	29366267	29366467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1071.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	6.89406309639	7.41659353497085	6.96078147678747	6.81833910642766	7.09845892453951	6.9890519775027	6.79147476011817	6.62168521474661	-0.205574391060336	0.378074270261608	0.680676787078483
Merged-chr17-65540849-8	chr17	65540725	65540925	+	865.8978880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289486)	promoter-TSS (NM_001289486)	-43.0	NM_001289486	381107.0	Mm.141275	NM_001008973	ENSMUSG00000045036	Tmem232	E130009J12Rik|Gm940|Tes13-L|Tes13-S	transmembrane protein 232	protein-coding	3.6119346963035	3.71797649641654	3.96375989063175	3.81808202905768	3.51380009466825	3.67043941798378	3.98841535536492	3.77270047908786	-0.126680965221259	0.790553734713177	0.918840742585233
Merged-chr18-68189950-4	chr18	68189852	68190052	+	949.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-37994.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	4.63699646429023	4.51097839506616	4.67758989904735	4.53236816237304	5.11934804758466	4.81173030740925	4.83642682350918	4.50741513246945	0.556365696239858	0.116349563406601	0.377416286456659
Merged-chr1-180231833-4	chr1	180231735	180231935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128605, intron 7 of 10)	L1MB3|LINE|L1	14115.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	5.81824910429216	6.21993601869123	5.74383765265566	6.06869650261127	6.11300249233894	5.94530277211142	5.71524410870215	5.95431076881033	-0.0650729333166105	0.803403998595155	0.924122552203287
Merged-chr1-92906138-4	chr1	92906026	92906226	+	779.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175118)	promoter-TSS (NM_175118)	-863.0	NM_175118	67446.0	Mm.46179	NM_175118	ENSMUSG00000047067	Dusp28	0710001B24Rik|AV005521	dual specificity phosphatase 28	protein-coding	3.4254698217812	3.55319230765672	3.23074001789507	3.51440202138628	3.80399841757755	3.47818106938615	3.86267520484438	3.74416271853932	0.909518581063575	0.0695804236402169	0.282187053403623
Merged-chr9-124312282-3	chr9	124312195	124312395	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243117, intron 1 of 4)	intron (NM_001243117, intron 1 of 4)	399.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	6.17932242643129	6.02211521635098	6.19886268986352	5.88007522247919	5.85210580652901	6.06259153681294	5.80951084913494	5.97372347272929	-0.219812920284561	0.373129394137468	0.676782538167593
Merged-chr13-37325685-4	chr13	37325570	37325770	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19675.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.20136534881231	5.44903250485751	4.80821860905876	4.33076239416058	5.35422649085356	5.54714878734649	5.1134343552213	5.06893928091847	0.513488811266251	0.191022913143759	0.490378651086737
Merged-chr10-111119424-4	chr10	111119322	111119522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45380.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	5.94154909317061	5.660812197754	5.66568461819481	6.12671008235984	5.79950282552904	5.34993560653146	5.71167142278596	5.30739184410101	-0.504756495281794	0.0867998770432021	0.321302639141821
Merged-chr4-151842812-4	chr4	151842724	151842924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 1 of 23)	intron (NM_001081557, intron 1 of 23)	18944.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	6.03333834510941	6.19796834836744	5.90002628246569	6.13403205841355	6.00120389086165	5.7890467332994	6.10498820418628	6.09222018918127	-0.115496402797635	0.632028596954673	0.84364113460172
Merged-chr13-34256818-4	chr13	34256707	34256907	+	877.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	L1MB1|LINE|L1	88375.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	4.24564096731332	4.03346212114279	4.15680282257842	4.32363289895282	4.26716999395605	4.13234001502756	4.0923462817234	4.24365448161239	-0.0339755056066645	0.932493645404753	0.975664181402534
Merged-chr10-6715813-4	chr10	6715723	6715923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-42770.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	6.06345822018723	5.55842850875499	5.19006216656135	6.19064911357795	5.86150006545371	5.61058681786255	5.73383766937393	5.78314585276128	-0.118967966922305	0.711269151298625	0.884400328622447
Merged-chr17-87796523-4	chr17	87796415	87796615	+	752.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199251, intron 1 of 1)	intron (NM_199251, intron 1 of 1)	1479.0	NM_199251	210741.0	Mm.312046	NM_199251	ENSMUSG00000050138	Kcnk12	mntk1	potassium channel, subfamily K, member 12	protein-coding	4.29130095287781	4.37375861522213	4.33271118335445	4.21350912403507	3.49796548368421	4.19237640789515	3.77936835197176	4.28918862942173	-0.864145882857217	0.0700899205988837	0.283375186455496
Merged-chr5-135479389-4	chr5	135479280	135479480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	65742.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	7.30337811828057	7.55210977055092	7.41616132443645	7.41956386660083	6.91224478410081	7.53371510079271	7.34008081816854	7.64866536564075	-0.064023462381589	0.766627637328576	0.908660493187862
Merged-chr2-153076032-5	chr2	153075942	153076142	+	837.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145536, intron 6 of 8)	intron (NM_145536, intron 6 of 8)	10087.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	4.44663845219639	4.72604315970521	4.44733868880908	4.58436584431221	4.1726380597907	4.61928966633855	4.24918850576882	4.31219546164212	-0.512812752551168	0.181560311425586	0.478232668725227
Merged-chr4-40313202-4	chr4	40313097	40313297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040663)	promoter-TSS (NR_040663)	-35.0	NR_040663	75819.0	Mm.399244	NR_040663	ENSMUSG00000087137	4930509K18Rik	-	RIKEN cDNA 4930509K18 gene	ncRNA	6.15218296157824	6.2655766960095	6.02592377379097	6.2382262471663	6.39668589010692	6.20264872906509	5.75138102192286	6.43609217793174	0.0780224702967246	0.760046362032825	0.905851390428209
Merged-chr10-39415776-4	chr10	39415674	39415874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	MIR3|SINE|MIR	45975.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	6.25690299254213	6.83685975711648	6.15357950287946	6.52987825259231	6.80476731822484	6.47472596538429	6.54189035396778	6.25353543689033	0.0910055181307078	0.723705470237272	0.889731469259882
Merged-chr19-45333177-1	chr19	45333077	45333277	+	596.0	f0_balb.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-30557.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	3.86160028115866	3.53562154970089	3.42174436811727	3.37353739871675	3.27236453221482	3.34724272082253	3.5711551964558	3.53165335326463	-0.407013080052256	0.441069617128309	0.728379224700288
Merged-chr12-32464611-2	chr12	32464511	32464711	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	85822.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	2.95216625414111	2.63099027126556	2.72365403484905	2.46054690335	2.60868238356389	2.83206207726	2.65031486646071	2.4451989762121	-0.288094242068424	0.680421628506376	0.868886456682011
Merged-chr8-22838900-4	chr8	22838791	22838991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-20648.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	7.55532360078262	7.67645500973991	7.57464047618697	7.98315987467466	7.64481205717138	7.57976409545643	7.45441749483443	7.69693133566865	-0.163374240112348	0.385671020911012	0.687082084332605
Merged-chr8-111937322-4	chr8	111937231	111937431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	-3372.0	NM_026693	93739.0	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	5.97234315869044	5.69082952472699	5.66017831614505	6.0628178320388	5.71594001452339	5.72463606259034	6.12044593300838	6.05162046965418	0.0650645667551229	0.809992900219932	0.926763756021251
Merged-chr11-99182678-4	chr11	99182606	99182806	+	952.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27629.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	4.66707318723581	5.03405361129917	4.31958880795337	4.5253322982008	4.56198249520652	4.7623555236331	4.52713242311102	4.5450253609143	-0.134713992813977	0.723280461240869	0.889557768663126
Merged-chr11-106329328-4	chr11	106329210	106329410	+	768.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133199, intron 14 of 23)	intron (NM_133199, intron 14 of 23)	-14748.0	NM_001313939	15985.0	Mm.2987	NM_008339	ENSMUSG00000040592	Cd79b	B29|Ig-beta|Igb|Igbeta	CD79B antigen	protein-coding	3.35356507429642	3.73434890445598	3.4823218485007	3.64877826568791	3.34323327066234	3.7741638015377	3.83627777742578	4.10041239587206	0.660879177587222	0.210849630458397	0.515475385416391
Merged-chr17-29434799-4	chr17	29434694	29434894	+	907.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56251.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	4.34799832147009	4.08643035199893	4.05612435214009	4.17901206343623	4.73727901724287	4.60411085705276	4.41265654197754	4.38881911154903	0.890143144168354	0.0201791470370116	0.128839108941421
Merged-chr2-25451376-4	chr2	25451259	25451459	+	989.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5484.0	NM_027085	69454.0	Mm.44194	NM_027085	ENSMUSG00000015093	Clic3	2300003G24Rik	chloride intracellular channel 3	protein-coding	4.71454671795817	5.61508982340691	4.0436425128439	3.57197576264317	4.87979821892812	4.96501871094531	4.57435947166528	4.10155577801784	-0.161287920755051	0.861132079999105	0.947555464347648
Merged-chr3-145938827-2	chr3	145938727	145938927	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151446, intron 2 of 3)	intron (NR_151446, intron 2 of 3)	813.0	NR_151446	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	3.79394315561551	3.40802851180415	3.97195345417888	3.47522832545044	3.47182744205277	3.64860327776336	3.72984842819853	3.64084559927769	-0.153953417698508	0.761496192837586	0.906556667566817
Merged-chr16-94332023-3	chr16	94331920	94332120	+	701.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133229, intron 2 of 3)	intron (NM_133229, intron 2 of 3)	3598.0	NM_133229	170765.0	Mm.42604	NM_133229	ENSMUSG00000022941	Ripply3	Dscr6	ripply transcriptional repressor 3	protein-coding	3.64686921854637	3.8333258274051	3.90879675336201	3.55699054513161	3.83434942856978	3.8785311706567	3.68948518734932	4.12289419760422	0.451861504618334	0.329186786523755	0.640453018367131
Merged-chr10-41571705-2	chr10	41571605	41571805	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 36 of 47)	B4|SINE|B4	3689.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	3.2655941698801	2.75587750790432	3.21097653882117	3.04522880847006	3.093725709669	3.20460886631347	3.1982557693391	3.26417536799424	0.429373418836602	0.465360543785955	0.745811792142008
Merged-chr2-103656151-4	chr2	103656048	103656248	+	845.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	89838.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	4.18289571270968	4.4806965632764	3.81688826195394	4.04911619931499	4.01339852707133	4.59981218574744	4.29370749502316	3.81489107608808	0.139361413950177	0.767544333330255	0.909027746453384
Merged-chr9-50944926-4	chr9	50944766	50944966	+	859.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 3 of 15)	Lx7|LINE|L1	64207.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	3.0581437545564	2.95859152836172	3.4280409617237	3.09125044987414	3.1243534204945	3.16877297101527	2.85279284732534	2.99440395322512	-0.400617973453207	0.505058213070671	0.77121840557206
Merged-chr7-126144000-4	chr7	126143885	126144085	+	728.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 8 of 23)	intron (NM_028816, intron 8 of 23)	56516.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	3.42889014527389	3.66298964591296	3.10065140845417	3.30988215089022	3.77652975426834	3.42131020604352	3.47279163097099	3.82496000789701	0.808248458308649	0.13367956699902	0.407083849551777
Merged-chr1-120258982-2	chr1	120258867	120259067	+	744.875	f0_balb.idr|f1_c57bl6.idr	intron (NM_001085409, intron 2 of 5)	intron (NM_001085409, intron 2 of 5)	6313.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	3.54283573506345	3.47921755008483	3.63597831310355	3.71638341010084	2.90281598586184	2.9759940960115	3.07703387818084	3.0156846976008	-2.5927114776871	4.19406896223759e-05	0.000971143899359496
Merged-chr6-86365572-4	chr6	86365474	86365674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025591)	promoter-TSS (NM_025591)	-109.0	NM_025591	66488.0	Mm.422972	NM_025591	ENSMUSG00000057497	Fam136a	2010309E21Rik|AW124904|Hyccin	family with sequence similarity 136, member A	protein-coding	8.30875142264249	8.48816923510437	8.21071147555739	8.21699015178527	8.39931955786763	8.57471352275535	8.48688438821371	8.43774317300131	0.208444202018472	0.182828328462883	0.47956727563604
Merged-chr3-96230616-4	chr3	96230507	96230707	+	917.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	8520.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	4.08980153608887	4.10970874935131	4.23771845976046	4.48598696122273	4.44174160050132	4.41042653644871	4.39090698388526	4.3671907087378	0.339056326374953	0.392753514568893	0.692117979418531
Merged-chr14-122261444-4	chr14	122261354	122261554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	-27816.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	6.52699440246895	6.52642426858299	7.18077206641539	7.44125655119996	6.65172516495403	6.30257842581576	6.93080206014319	6.81778993004414	-0.416229867786065	0.144714327264735	0.42389387244348
Merged-chr3-136329219-3	chr3	136329134	136329334	+	736.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3168.0	NM_001033350	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	4.03794870665544	4.01834881530323	3.99399791536966	3.76281000413626	3.73532597645159	3.91846375094159	3.67404652125475	3.79603760594355	-0.48225510533239	0.285962523076316	0.59757930169056
Merged-chr13-59510153-4	chr13	59510064	59510264	+	906.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048008, intron 11 of 17)	intron (NM_001048008, intron 11 of 17)	34287.0	NM_001284221	67269.0	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	4.29354459535054	3.99229784500992	3.82712804640971	4.32447961540789	4.50568720041774	4.54835700977175	4.27489283057054	4.33437032387646	0.678454791415256	0.104589310578115	0.355647598530454
Merged-chr8-86921107-4	chr8	86920979	86921179	+	994.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35821.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	4.53976108867078	4.52536783281352	4.65972912800429	4.56406854454739	4.59509975801097	4.58476013462833	4.74579616765047	4.61820449019	0.142061533231618	0.679763303542814	0.86857902618052
Merged-chr15-93298392-4	chr15	93298316	93298516	+	797.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024189, intron 2 of 3)	intron (NM_024189, intron 2 of 3)	-23237.0	NM_001346785	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	3.73938520751553	3.97850098699253	4.07649987817027	3.96131939373739	3.75982897337935	3.68095606358529	3.61208374027785	4.07389212418464	-0.434385413711831	0.348620924526259	0.656307354205775
Merged-chr6-17385655-4	chr6	17385554	17385754	+	868.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamRep605|LTR?|LTR?	78014.0	NM_001243064	12389.0	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	3.46365028326924	3.53296264852345	3.57514745722672	3.35274617167857	3.95061991705244	3.39095872638865	3.70921978521337	3.40313045758076	0.54155198251277	0.294247851507566	0.606535224072776
Merged-chr5-45669045-3	chr5	45668957	45669157	+	858.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019438)	promoter-TSS (NM_019438)	651.0	NR_073433	69788.0	Mm.381492	NR_073433	ENSMUSG00000104986	1600023N17Rik	AV119442	RIKEN cDNA 1600023N17 gene	ncRNA	3.61569000932433	3.48138017341085	3.7189693781133	3.32977282460943	3.59803267396421	3.73444456667203	3.54763621216679	3.81166508261498	0.458237239474412	0.348955081647708	0.656628169207238
Merged-chr13-33045863-3	chr13	33045783	33045983	+	611.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18469.0	NM_011452	20706.0	Mm.45371	NM_011452	ENSMUSG00000021403	Serpinb9b	1600019A21Rik|R86|SPI-CI|Spi10|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9b	protein-coding	3.07616158803443	2.97343081025821	3.07654833481475	2.81617074600108	3.00940202950476	3.25137619796635	3.12567610017023	3.54149072879284	1.04017281772365	0.0745953895959871	0.294492097254942
Merged-chr11-103247747-4	chr11	103247646	103247846	+	846.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	19655.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	4.17590122307722	4.1292878060524	4.07997061499698	4.31578297308619	4.36675968785982	4.15244160053928	4.0630808143948	4.46333096261712	0.214391761887323	0.59631658182238	0.824641303041601
Merged-chr16-30689852-3	chr16	30689764	30689964	+	760.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	90141.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	3.48188286924448	3.39753446388178	3.10877641668165	3.05594087445022	3.44648370909583	3.7056831188577	3.66611383373672	3.48037610248733	1.07560254387351	0.0428238039913567	0.210423459851721
Merged-chr7-27357606-7	chr7	27357479	27357679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199236, intron 18 of 18)	intron (NM_001199236, intron 18 of 18)	-1571.0	NM_138676	192192.0	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	5.59072664191719	5.62111919967336	6.00243379386064	5.27351371658529	5.5044144224563	5.53399786235995	5.78410969953681	5.85409353408749	0.0737109694785154	0.805581280067634	0.92521045259115
Merged-chr7-127422037-4	chr7	127421924	127422124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026999)	promoter-TSS (NM_026999)	10.0	NM_026999	69234.0	Mm.20301	NM_026999	ENSMUSG00000045251	Zfp688	2810407K09Rik|AI326029	zinc finger protein 688	protein-coding	7.30355955615636	7.28250063529422	6.89179934478271	7.16004435567734	7.16905287019914	7.15011797392337	7.14198202986733	6.90081062432336	-0.100324881214272	0.611624736623825	0.83242197992595
Merged-chr6-35539231-2	chr6	35539131	35539331	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008098, intron 1 of 3)	CpG	657.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	3.7211111891722	3.92819547516156	3.97488093227924	3.75453124187214	3.55781631560524	3.5263939744244	3.86274204588821	4.36354332580355	0.0729718081705544	0.886279157919936	0.957289664078144
Merged-chr7-127931718-4	chr7	127931618	127931818	+	883.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001319147)	TTS (NM_001319147)	-1605.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	5.1008478250851	4.53607223289593	4.85367550564689	5.27532037442214	4.23545519002563	4.67867514571646	4.43469927303791	4.40429211122042	-1.17063236430168	0.0027326101175018	0.0296817420347415
Merged-chr8-94098502-4	chr8	94098400	94098600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026116, exon 1 of 17)	5' UTR (NM_026116, exon 1 of 17)	311.0	NM_026116	67378.0	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	8.24281649117164	8.54158858641246	7.91136189969981	8.27749725934904	8.48310867094428	8.39831464679079	8.47666108232314	8.05669765997817	0.12875352533424	0.505229977448179	0.77136407551927
Merged-chr15-7906676-4	chr15	7906561	7906761	+	937.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081402, intron 13 of 17)	intron (NM_001081402, intron 13 of 17)	91111.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	4.41228353108067	4.18780712082211	5.2698342593	5.40156129887652	4.58186262565181	4.59457947630344	4.76767612706321	4.41023373762234	-0.692620488528085	0.133223117347181	0.406528692002701
Merged-chr17-87331294-4	chr17	87331188	87331388	+	852.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 10 of 19)	intron (NM_028639, intron 10 of 19)	48402.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	4.14163377371583	3.89059015787722	4.09631930071097	4.53180670650416	3.95270330167281	3.77505360685402	4.16784658660687	4.18398530401789	-0.44932956027615	0.327167000004722	0.638693944031598
Merged-chr6-120451672-4	chr6	120451571	120451771	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11526.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	3.94697630852704	4.39418398490179	3.66254343408849	3.56318709328496	4.29114342049756	4.07173802617938	4.2443516456895	3.94522890921583	0.568460382186825	0.244123603485506	0.555192606359545
Merged-chr2-168473083-3	chr2	168473029	168473229	+	963.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117236.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	4.17914266893336	4.0020445379334	4.09542697567107	3.99211099811518	3.87045280219625	3.80669250382892	3.67444364982986	4.00253847620421	-0.609059780991501	0.165386050370026	0.456032140671267
Merged-chr11-113326540-1	chr11	113326440	113326640	+	876.3333130000001	f1_c57bl6.idr	intron (NM_027216, intron 6 of 9)	intron (NM_027216, intron 6 of 9)	-116871.0	NR_040276	319871.0	Mm.383743	NR_040276	ENSMUSG00000085421	4732490B19Rik	-	RIKEN cDNA 4732490B19 gene	ncRNA	3.24802570721254	2.97351603057311	2.72428672854669	3.06849472120301	3.00924816776703	3.24781116696225	3.1805339502147	3.39893445910139	0.75925965307419	0.21348235808816	0.518899766642438
Merged-chr3-14832981-3	chr3	14832861	14833061	+	969.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24596.0	NM_009799	12346.0	Mm.273195	NM_009799	ENSMUSG00000027556	Car1	AW555628|Ca1|Car-1	carbonic anhydrase 1	protein-coding	5.52309605586673	4.61999125439818	6.34393022311307	6.50534575976363	4.2176347123984	4.37788946522497	4.60089992149428	4.23046786238889	-3.04366758486722	1.38545033168746e-05	0.000369650694849517
Merged-chr3-105981185-2	chr3	105981087	105981287	+	726.25	f0_balb.idr|f1_balb.idr	intron (NM_007696, intron 8 of 10)	intron (NM_007696, intron 8 of 10)	7385.0	NM_007696	12659.0	Mm.431947	NM_007696	ENSMUSG00000074340	Ovgp1	120kDa|AU016433|AU019448|Chit5|MOGP|OGP|muc9	oviductal glycoprotein 1	protein-coding	3.80246478977215	3.80752162417579	3.52272733590068	3.60832226542378	2.87707157921989	3.13326774795089	3.28276847290964	3.16288038673911	-2.25109855328206	0.000210696863518211	0.00380156959400829
Merged-chr11-83221594-4	chr11	83221490	83221690	+	911.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1986.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	4.14712851371568	3.98174976030569	4.28113383809404	4.0304667370037	4.45403630062844	3.82764658775605	4.34244008727239	4.31985866257246	0.395498118742525	0.35252181030835	0.659608052783524
Merged-chr15-101244136-4	chr15	101244018	101244218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18932.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	7.37613801828785	7.21358263407796	7.34768341630109	7.00396084321247	7.21799949362465	7.40922560629077	7.21778000867879	7.46649592620358	0.132623814682993	0.494844247999454	0.765380871135718
Merged-chr19-6292242-4	chr19	6292122	6292322	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	-14235.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	5.40815730366828	5.85905229711432	5.52056706383504	4.788965830441	5.6947858283651	5.58459887059758	5.51873530129147	4.99824816452863	0.0616219871592536	0.866409809974617	0.949955850585857
Merged-chr16-91778144-4	chr16	91778057	91778257	+	866.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	48786.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	3.72783785918471	4.17908185568904	3.89632897159047	4.33862890416339	3.93307164759207	3.72182373702674	3.98055013722273	4.33387779578125	-0.157872902737517	0.74256453052622	0.898514054068236
Merged-chr8-70804130-4	chr8	70804016	70804216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4333.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	5.46246302035282	5.5255704801309	5.54368098871004	5.57510779704337	5.56732360621203	5.49242518890638	5.29085973238901	4.87552046899376	-0.328843216740504	0.278959970775262	0.591154591011528
Merged-chr16-3718563-2	chr16	3718463	3718663	+	834.916687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161790)	promoter-TSS (NM_001161790)	-439.0	NM_001161791	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	2.79138636134095	3.04674397507915	2.99386489708577	2.66863376424174	2.96784866167007	3.2833671590195	3.20878717931806	3.05336175558884	1.07006530541282	0.0770135898476745	0.300004021432683
Merged-chr15-40060442-3	chr15	40060332	40060532	+	986.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155348, intron 2 of 2)	intron (NR_155348, intron 2 of 2)	15244.0	NR_155348	102636079.0	Mm.421381	NR_155348	ENSMUSG00000115142	Gm33251	-	predicted gene, 33251	ncRNA	3.43393360956031	3.32083246373627	3.75643229402219	4.06317168785484	3.26519522595294	3.48710166992427	3.78595836760671	3.60334945307507	-0.441728977966363	0.434577826218645	0.7238182012175
Merged-chr5-114922079-4	chr5	114921980	114922180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1160.0	NM_001359946	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	7.23530671600212	7.68705843607836	7.39494762231561	7.28984384065361	7.61484767208717	7.52152134737852	7.36809441232869	7.26480378366857	0.05550971574654	0.778672077545352	0.913781420202775
Merged-chr17-43558038-4	chr17	43557926	43558126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10425.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	7.34206800557851	7.30628887489675	7.55671394655919	7.3363526064719	7.02539235761871	7.45829740638116	7.67131119847199	6.7248685499464	-0.159450463878823	0.507144460062192	0.772710503440438
Merged-chr19-5803227-1	chr19	5803127	5803327	+	1000.0	f0_balb.idr	promoter-TSS (NR_002847)	promoter-TSS (NR_002847)	-555.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	5.95653910880345	5.92430707630747	6.325286103941	5.57987567458635	6.08763622016095	6.06485722142698	5.76020886208658	6.32073962511951	0.183886153960664	0.515956734153241	0.777920536992964
Merged-chr12-17777201-4	chr12	17777091	17777291	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	86382.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	4.51659035103208	4.27663521246274	4.15739541268162	3.58662436398887	5.32061495207688	5.37647331850325	5.12366628464091	4.83403084105362	2.21226953620256	9.59760924984668e-08	4.1252912366838e-06
Merged-chr5-59996857-4	chr5	59996729	59996929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10827.0	NR_040682	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	6.1675050950426	6.21215378626432	6.64450086960139	6.62434216589471	6.49837053425021	6.68057459521326	6.58101930021352	6.28643145154374	0.11184453627619	0.641643929567077	0.848835113142923
Merged-chr2-145161306-4	chr2	145161219	145161419	+	793.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6456.0	NM_001356497	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	3.61637971569846	3.43563573902463	3.32061839688867	3.60690441745049	3.86665364450221	3.49968767367109	3.60235633147073	3.89818035598778	0.698934445173645	0.161302879057173	0.450029320380696
Merged-chr11-73133223-4	chr11	73133109	73133309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 24 of 30)	intron (NM_001361245, intron 24 of 30)	5085.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	5.84322757267702	6.16932517507584	5.38302874899038	6.11229616416707	6.28092864949156	6.04445687766323	5.57707300734804	6.19624172968306	0.20921802414531	0.49241134668309	0.763456691756969
Merged-chr13-24463941-4	chr13	24463821	24464021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111110, intron 13 of 16)	intron (NM_001111110, intron 13 of 16)	48799.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	6.41390072587825	6.60474735138423	6.50537381800016	6.85656027062192	7.081367537583	6.78279199346364	6.9675137764434	6.56858579779181	0.353927763138676	0.124523587523459	0.39182460706124
Merged-chr17-72814137-4	chr17	72814053	72814253	+	715.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22475.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	3.41774890163857	3.40776095670049	3.91406616635101	3.55659695835969	3.59980502146012	3.4702454327459	3.52024146394679	3.63814765557039	-0.0839294846996418	0.868077665310193	0.950586789872738
Merged-chr11-110538402-4	chr11	110538311	110538511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59071.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	5.98850568229461	6.00085687481511	6.05415129914569	6.20875890785332	5.81518507735329	5.69526129903455	5.81981003249909	6.64019878845233	-0.0297782951765244	0.920527229511208	0.970515472884726
Merged-chr17-25875535-4	chr17	25875456	25875656	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026686)	promoter-TSS (NM_026686)	56.0	NM_026686	68347.0	Mm.35098	NM_026686	ENSMUSG00000025731	Mettl26	0610011F06Rik	methyltransferase like 26	protein-coding	5.60986191369042	5.65457636004333	5.45219230781696	5.51514039822681	5.54600536370938	5.12191743736869	5.30782092821846	5.41991552417137	-0.328311389557438	0.246822053955581	0.558085990422626
Merged-chr1-52166889-3	chr1	52166775	52166975	+	768.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081081, intron 17 of 17)	intron (NM_001081081, intron 17 of 17)	47253.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	3.61216759146782	3.50587457481402	3.79199207922049	3.3748113167096	2.96335983679032	3.12416281771083	3.49760196619487	3.22035643514098	-1.3191719452169	0.0239208687434658	0.144159132697583
Merged-chr1-24699522-4	chr1	24699416	24699616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026719, intron 3 of 15)	intron (NM_026719, intron 3 of 15)	20598.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	7.51292225855503	7.89820510507443	7.70284628987208	8.40519234760841	6.63879664667151	6.29667553890582	7.11050686265841	6.54912958348135	-1.68500238727155	2.54056388088044e-10	1.82846103616976e-08
Merged-chr14-70028529-3	chr14	70028429	70028629	+	789.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 4 of 6)	intron (NM_028560, intron 4 of 6)	-48916.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	3.05247617945601	2.89421517356784	3.05284504456756	2.70318291657418	3.18264665728546	3.47041991356298	3.28324309861779	3.67768532814467	1.94851040248805	0.000913726486642355	0.0125338480618069
Merged-chr1-20933642-3	chr1	20933544	20933744	+	966.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355122, intron 2 of 2)	intron (NM_001355122, intron 2 of 2)	15804.0	NM_001355122	74229.0	Mm.40780	NM_028829	ENSMUSG00000025931	Paqr8	1700019B16Rik|3110001D06Rik	progestin and adipoQ receptor family member VIII	protein-coding	5.06841115791642	4.45981467135913	4.47179940746522	4.95253627868186	4.16257193946453	3.95644076056982	4.53255788660158	4.2872253163406	-1.19094930456948	0.0049770335669091	0.0473831812049571
Merged-chr13-3523655-4	chr13	3523540	3523740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A_|LTR|ERVL	-14435.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	5.52986864045132	5.00497553190607	5.21264046118905	6.01862566966191	4.94199260036187	5.32279072297904	5.21912893432341	5.39221448931463	-0.526810003147994	0.145043231979712	0.424333424130041
Merged-chr17-43326874-4	chr17	43326769	43326969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33562.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	6.16982078522245	5.84152802404436	5.75151799401313	5.76431907846718	6.12186333653466	6.16448490776557	6.22922178789695	5.72104483194811	0.302190566635367	0.247094883686465	0.558168726560377
Merged-chr2-103606017-4	chr2	103605915	103606115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	MIRb|SINE|MIR	39705.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	7.57347910414768	7.88549548904861	7.8010663260353	7.79330645814455	7.87926095024834	8.14332591630023	7.64292426359139	7.62349103606953	0.0892405995721583	0.639842296871589	0.847775261983635
Merged-chr9-44514289-4	chr9	44514191	44514391	+	977.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007551, exon 2 of 2)	exon (NM_007551, exon 2 of 2)	12130.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	5.83892276469117	5.99366264387551	5.32254934231976	5.14319667473629	5.46239902503598	5.64861982658683	5.01445723522352	5.57782063450019	-0.289319155685834	0.403713116611661	0.700922982752502
Merged-chr4-28424553-4	chr4	28424433	28424633	+	885.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-388598.0	NM_001290434	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	5.34413125306367	4.99518141096403	4.84198130296803	5.48135079209845	4.41772690737581	4.44448388526039	4.34571420494357	4.50973463980507	-1.63172420546162	1.07849318656731e-05	0.000294913816852381
Merged-chr12-41315152-4	chr12	41315066	41315266	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	170891.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	4.93946772008006	4.93114769933735	5.63906536056952	5.16156380199252	5.17649528568507	4.75140721524875	4.76539744007849	4.51718118853138	-0.697165343662945	0.0664034095736994	0.274680167100387
Merged-chr15-76368929-4	chr15	76368847	76369047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021555)	promoter-TSS (NM_021555)	49.0	NM_021555	59053.0	Mm.133202	NM_021555	ENSMUSG00000022554	Hgh1	Brp16|D15Ertd741e|Fam203a|MNCb-5873	HGH1 homolog	protein-coding	5.83777890640015	6.38002408976031	5.99780998905905	6.28386660637757	5.77304214602821	5.6266672167999	5.73483980918963	5.85860884117363	-0.641576383620417	0.0140710168344448	0.100356804334564
Merged-chr6-4054626-4	chr6	4054523	4054723	+	965.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7039.0	NR_131108	78034.0	Mm.243851	NR_131108	ENSMUSG00000107681	4930528H21Rik	Gm43986	RIKEN cDNA 4930528H21 gene	ncRNA	4.50876519285332	4.46869015573381	4.22016632997323	4.88768899201414	4.56563118754955	4.80576522500023	4.57203606603364	4.97198291659932	0.361737177095226	0.360892931638467	0.666130694735743
Merged-chr17-85562686-3	chr17	85562586	85562786	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55710.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	3.99551253378238	4.05086558376906	4.94181326092167	4.4604043469786	3.70002225469934	3.83174886244916	3.81532265435118	3.94080032871411	-1.5730625935217	0.00133355407014148	0.0169926683062299
Merged-chr15-101981511-4	chr15	101981409	101981609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22833.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	5.91133246537492	5.69246303343974	6.14966670791221	6.08155861955351	5.43793199634281	5.42186099909856	5.72062271257423	5.79432550686525	-0.616055557350882	0.0240731751349086	0.144811001625477
Merged-chr3-95136538-4	chr3	95136427	95136627	+	877.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153121, intron 1 of 2)	intron (NM_153121, intron 1 of 2)	2439.0	NM_153121	217779.0	Mm.341945	NM_153121	ENSMUSG00000053769	Lysmd1	2610022K04Rik|AI415311	LysM, putative peptidoglycan-binding, domain containing 1	protein-coding	3.98332179342358	3.58133024810831	4.0816631540485	4.06009265835703	4.44623481001201	4.0005990190719	4.10960108567366	4.29481988378417	0.73401780780058	0.10097455872436	0.348744146510806
Merged-chr8-115530208-4	chr8	115530101	115530301	+	970.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	176693.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.08483596356522	4.60914641162938	5.11542757852621	5.16643804519822	4.7908249953439	4.87290894842641	4.67678289902947	4.77444980272421	-0.485310088042671	0.158180953695935	0.445096541078547
Merged-chr8-34816322-4	chr8	34816226	34816426	+	986.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176933, intron 1 of 3)	intron (NM_176933, intron 1 of 3)	8716.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	5.43970956807336	5.66170267554282	5.06763814729079	5.61559666706875	5.81864519699079	5.6450377617719	5.60324363526337	5.60218686722479	0.330016021911788	0.252448192637589	0.563698274735734
Merged-chr1-185224383-3	chr1	185224286	185224486	+	817.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 2 of 34)	L1M4|LINE|L1	-18540.0	NR_034044	100217449.0	Mm.429560	NR_034044	ENSMUSG00000077571	Snora36b	MBI-87	small nucleolar RNA, H/ACA box 36B	snoRNA	3.86983335551549	3.70996911035838	3.4626406937697	3.79534343901417	3.58423625956479	3.44997408957842	3.61670992907741	3.51946254593478	-0.558471591009225	0.254480440576086	0.565875141510941
Merged-chr13-97441357-4	chr13	97441202	97441402	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110432, intron 1 of 1)	MLT1D|LTR|ERVL-MaLR	6332.0	NR_110432	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	4.43172978976752	4.46292915935501	4.55553350117743	4.62548978973464	4.49678729113786	4.27037045154617	4.57254678083753	4.51290966212161	-0.131890743750983	0.717682332004968	0.887135277942824
Merged-chr5-19656163-4	chr5	19656069	19656269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 1 of 22)	intron (NM_001170746, intron 1 of 22)	-251349.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	6.60259060191433	6.30707482137945	7.22570463416662	7.24343109847074	7.10380742801124	6.95702977248917	7.10336485978523	7.35867954846866	0.307754473538833	0.248104334784108	0.559186294982657
Merged-chr7-90130948-2	chr7	90130848	90131048	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	735.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	5.38593966919863	6.18947944237823	5.18995801875934	5.17835048239813	5.25864784986815	5.65092016372615	5.5555554860317	5.63106761056148	-0.0523664829307971	0.882760657882057	0.955814918609989
Merged-chr10-51483494-2	chr10	51483394	51483594	+	999.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008147, intron 5 of 8)	intron (NM_008147, intron 5 of 8)	2882.0	NM_001291892	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	2.93572966781038	3.0337470148446	2.93608724597751	3.09706962383149	2.77567390411961	2.91457981958347	2.92574761814709	2.80794708128844	-0.6917372510063	0.25376751314821	0.565032649092237
Merged-chr6-88041364-1	chr6	88041264	88041464	+	603.0	f0_balb.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	3653.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	3.27395089972778	3.3052253332756	3.21547547169935	3.25618189243955	3.41056692186502	3.26374329468349	3.20423730793604	3.38272923752876	0.215684024092271	0.679737618968454	0.86857902618052
Merged-chr10-41958847-4	chr10	41958734	41958934	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 10 of 17)	intron (NM_001034858, intron 10 of 17)	59548.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	4.24599356222708	4.78816014619947	5.10880995584812	5.01800136565339	5.22742695700025	4.94260842192147	4.82037277704342	4.80285732477656	0.255357629578452	0.507117954286923	0.772710503440438
Merged-chr17-50528693-4	chr17	50528596	50528796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	MTEa|LTR|ERVL-MaLR	19149.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	5.96934602011908	6.23319723768761	5.46251798921396	6.0189374384548	6.17636450700558	6.12351744098177	5.93991454446448	5.89823685318058	0.133332993635384	0.623911834247445	0.839195335242146
Merged-chr4-86676850-3	chr4	86676767	86676967	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR34B_MM|LTR|ERVK	-6808.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	3.7079533514721	3.45189569409898	3.34882958378272	3.27746458283467	4.60716616761253	4.53316787945568	4.5190513159164	4.66924913573318	3.15312051400093	1.99049895895334e-12	2.02692024891759e-10
Merged-chr10-34113465-4	chr10	34113357	34113557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	14515.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	6.41465117948594	6.46760498494045	6.77616301993519	6.08547493222499	5.92124849276007	6.24919116530076	6.06231465874561	6.02273323854618	-0.580365502441077	0.025076957927308	0.148709972640121
Merged-chr17-35425803-2	chr17	35425701	35425901	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023124, exon 3 of 5)	exon (NM_023124, exon 3 of 5)	924.0	NM_207648	110557.0	Mm.439827	NM_207648	ENSMUSG00000073409	H2-Q6	0610037M15Rik|H-2Q6|Qa-6|Qa6	histocompatibility 2, Q region locus 6	protein-coding	3.23784258991821	3.12243002130484	3.29739269231136	2.67660159203609	3.26727784530308	3.41449094061026	3.22572047342496	3.69008951425764	1.14776182683236	0.0611604487537833	0.261556091194757
Merged-chr11-61868237-4	chr11	61868122	61868322	+	891.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13130.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	4.47941485940419	4.17532732915625	4.06445005570354	4.27844857876809	4.59669270192675	4.43993521712489	4.24716615394235	4.62566732278719	0.542093019529318	0.162857701300943	0.452372617400969
Merged-chr13-91093836-3	chr13	91093748	91093948	+	806.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 3 of 7)	intron (NM_025770, intron 3 of 7)	130139.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	3.74926904034064	3.55536008537977	4.01845442413236	4.29999553879349	3.25736761064988	3.39081345760382	3.63111565743602	3.27356951596713	-1.79748883480426	0.00133855373848642	0.0170380752059593
Merged-chr6-116458981-4	chr6	116458875	116459075	+	915.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009662, intron 1 of 13)	intron (NM_009662, intron 1 of 13)	2203.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	4.91491048282607	4.52613376253734	4.950047317321	5.31660291152198	4.72497305355816	4.73605502855518	4.99139387211904	4.80366341105116	-0.321480992623628	0.381225490603585	0.683526515664875
Merged-chr6-135116693-1	chr6	135116593	135116793	+	629.0	f0_balb.idr	exon (NM_001205396, exon 2 of 4)	exon (NM_001205396, exon 2 of 4)	1590.0	NM_053118	93746.0	Mm.49902	NM_053118	ENSMUSG00000030205	Gprc5d	-	G protein-coupled receptor, family C, group 5, member D	protein-coding	3.16949188422326	3.11145474028474	3.22621380926005	3.55239239052372	3.04482053139795	3.02305793553544	3.03930535949855	3.04787259522047	-1.00423874598879	0.0887424384776986	0.325111844583051
Merged-chr7-114194483-4	chr7	114194374	114194574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	60206.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	5.38685402627442	5.27669341372578	5.44802360515137	5.7385211749441	5.70934674404674	5.56427714243759	5.70709098237564	5.75536701635803	0.324385193495376	0.248849965587216	0.56007881897978
Merged-chr10-67549252-7	chr10	67549162	67549362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005419)	promoter-TSS (NM_001005419)	-307.0	NM_001005419	211488.0	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	5.54231968608262	5.69212136641495	5.59891368884006	5.58475250733411	5.79961899188647	5.95034439920634	5.7479664058118	5.88646306883989	0.396761590468577	0.11353584347695	0.372557114452502
Merged-chr13-12264915-4	chr13	12264811	12265011	+	833.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6798.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	4.12101569046115	4.71186529113742	3.91029101978391	4.22163551034334	4.28056017768783	4.38815203408044	4.24116327384542	3.78885267579448	-0.205338011302476	0.65920647906435	0.858145103575869
Merged-chr15-76802105-4	chr15	76802011	76802211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	16059.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	5.65408484765174	5.71462076551941	5.65507511941888	5.89276972341447	5.4143981702995	5.32245148199781	5.52370513840013	5.2452416128064	-0.622042137859917	0.0227088771825722	0.139241231411416
Merged-chr2-139381869-3	chr2	139381767	139381967	+	918.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112046.0	NM_001356507	228677.0	Mm.100450	NM_175467	ENSMUSG00000039092	Sptlc3	C130053K05Rik	serine palmitoyltransferase, long chain base subunit 3	protein-coding	3.99422490767808	3.66057251792229	3.8557859375663	3.73677021367165	3.66609615959596	3.6396234905596	4.06062592008432	3.80362685188295	-0.028966151969773	0.950469351565425	0.982264362614525
Merged-chr2-120970691-4	chr2	120970577	120970777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009461)	promoter-TSS (NM_009461)	38.0	NM_009461	22222.0	Mm.389330	NM_009461	ENSMUSG00000027272	Ubr1	AI504731	ubiquitin protein ligase E3 component n-recognin 1	protein-coding	5.53254449816292	5.84832384556355	5.58643859385823	5.1710138446087	5.64051906184936	5.62487533203996	5.33345507640819	5.35629940248338	-0.0738781765629367	0.809501336042934	0.926477611239388
Merged-chr7-99182844-4	chr7	99182752	99182952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026384)	promoter-TSS (NM_026384)	-139.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	6.87023379116159	6.95045831744467	6.80619159806698	6.25662661378892	6.61484373114555	6.62979081528156	6.22923740490986	6.55010474969203	-0.313785457487754	0.213976782307042	0.519622441671486
Merged-chr10-19614546-4	chr10	19614440	19614640	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-7488.0	NM_178258	237310.0	Mm.331979	NM_178258	ENSMUSG00000039760	Il22ra2	CRF2-10|CRF2-s1|CRF2X|Il-22bp	interleukin 22 receptor, alpha 2	protein-coding	4.63549955136571	5.15016735240246	5.12473693619814	5.43403360152744	5.1330510586069	4.72460178540879	5.06814150481148	4.88151486813215	-0.319021294481546	0.372378719554448	0.676179108629457
Merged-chr1-165724922-1	chr1	165724822	165725022	+	788.333313	f0_balb.idr	Intergenic	Intergenic	-16828.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	3.75925631699886	3.78432901335672	3.65425049250965	3.78187378313357	3.53417071885981	3.77182130321449	3.84058578047482	3.75762498723582	-0.0763108396770602	0.868499072301367	0.950757933022268
Merged-chr9-44305772-4	chr9	44305646	44305846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172162)	promoter-TSS (NM_172162)	-75.0	NM_172162	102423.0	Mm.24570	NM_172162	ENSMUSG00000032119	Hinfp	AA589481|HiNF-P|Mizf	histone H4 transcription factor	protein-coding	8.45105452178692	8.74140726243159	8.51298902945024	8.49753851299507	8.54204181816136	8.83068425523716	8.67806480326502	8.74113813533804	0.179705477876212	0.255046077066632	0.566584211464242
Merged-chr11-58948814-4	chr11	58948700	58948900	+	895.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030082)	promoter-TSS (NM_030082)	-111.0	NM_030082	78303.0	Mm.28022	NM_030082	ENSMUSG00000056895	Hist3h2ba	1500011O09Rik|AI413321	histone cluster 3, H2ba	protein-coding	3.5893882620177	3.94585884740251	3.99790356982726	3.77191105117485	5.1326359131866	4.89245877541831	4.91522068549313	4.74998222614361	2.57030258406935	2.17815753664275e-10	1.58203138061933e-08
Merged-chr10-89547988-1	chr10	89547888	89548088	+	569.0	f0_balb.idr	Intergenic	Intergenic	-14366.0	NM_001163504	20186.0	Mm.3095	NM_009108	ENSMUSG00000047638	Nr1h4	AI957360|Fxr|HRR1|RIP14|Rxrip14	nuclear receptor subfamily 1, group H, member 4	protein-coding	2.03848286050632	2.25610276100805	2.22291932167461	1.68527470315561	1.58854456215015	1.67459198912543	1.65838167695411	1.66103682437794	-5.09967241883492	7.58521532538923e-05	0.00160162575391836
Merged-chr2-30967705-7	chr2	30967600	30967800	+	962.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144884, exon 1 of 5)	exon (NM_144884, exon 1 of 5)	218.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	4.56399157312868	4.72704088702488	4.88544193149422	3.95970791336594	5.18033532735281	5.25441076727516	4.75120255392022	5.16691659828787	1.09383735724813	0.00616164550826942	0.0552994282729932
Merged-chr13-74260197-7	chr13	74260087	74260287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317351, intron 2 of 9)	CpG	32144.0	NM_009644	11624.0	Mm.290446	NM_009644	ENSMUSG00000021575	Ahrr	mKIAA1234	aryl-hydrocarbon receptor repressor	protein-coding	5.69244214703795	5.4021836851936	6.13276597952852	5.80518711766643	5.79196222333554	5.76151527006472	5.96511288177944	6.05203272032951	0.184867784798979	0.50588343116064	0.771699636668378
Merged-chr5-62845010-4	chr5	62844894	62845094	+	868.195801	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 6 of 8)	intron (NM_001170705, intron 6 of 8)	31171.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	4.35782680484642	4.52826554770689	4.31305226195038	4.65326117603053	4.36470202458417	4.53129438737682	4.46533130544931	4.31044094158956	-0.159694870059795	0.671912574792357	0.864972533221387
Merged-chr9-107340524-4	chr9	107340404	107340604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175486)	promoter-TSS (NM_175486)	-136.0	NM_175486	235599.0	Mm.71039	NM_175486	ENSMUSG00000037977	6430571L13Rik	-	RIKEN cDNA 6430571L13 gene	protein-coding	6.74281590592406	6.66875469210773	6.74400261990102	6.47626483526912	7.09386822068936	6.93541664734862	7.16091807693128	6.73920277665147	0.489016809598096	0.0194735844273495	0.125701484171063
Merged-chr11-53466742-4	chr11	53466596	53466796	+	951.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027917, intron 7 of 7)	CpG	9491.0	NM_027917	71774.0	Mm.274370	NM_027917	ENSMUSG00000018387	Shroom1	Apx|Shrm1	shroom family member 1	protein-coding	3.72561180514627	4.24552906402738	3.88786677006837	3.76151251957573	4.00170461174401	3.72430832518783	4.05782750540818	3.98308097080126	0.0886748635774864	0.84695258549193	0.942078137957895
Merged-chr13-20489908-2	chr13	20489808	20490008	+	867.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198093, intron 1 of 6)	intron (NM_198093, intron 1 of 6)	16918.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.42796936557244	3.14727091530416	3.5397940453716	3.42132353305535	3.5819619362659	3.60125578968328	3.5770879847642	3.68832026209632	0.725086320696759	0.146987201151722	0.42770298360772
Merged-chr5-123142282-4	chr5	123142179	123142379	+	835.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040398)	promoter-TSS (NM_001040398)	86.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	3.56839318218405	4.02146189078673	3.99703977089584	3.59033365163722	3.97001774373927	3.80910880369893	3.88580262763367	4.12415498726762	0.423944082176147	0.36352371848579	0.668574361907056
Merged-chr1-71811465-4	chr1	71811392	71811592	+	903.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76620.0	NR_027659	667931.0	Mm.214128	NR_027658	ENSMUSG00000099707	Gm8883	EG667931|Gm554	predicted gene 8883	ncRNA	4.74191270996541	4.11422352448845	4.93740297155169	4.71506538473706	4.40055112530066	4.55618978248327	4.31298213316458	4.66729234690503	-0.37791286953894	0.349962883956121	0.657468765915822
Merged-chr10-8925450-4	chr10	8925346	8925546	+	845.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39376.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.98496986869182	3.8374405142714	4.3243304335346	3.97338215406303	4.36205781584931	4.36441742403832	4.63574835001561	4.44315815161517	1.02922455076309	0.0105492008815058	0.0820904744227288
Merged-chr3-9610159-4	chr3	9610068	9610268	+	897.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133218)	promoter-TSS (NM_133218)	-83.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	4.14516217373031	4.52997631324047	4.34594123616434	4.87105951512765	4.30109983170275	4.47514221048988	4.75242861802049	4.55653347274086	0.00931825208087872	0.982113021545681	0.993573193675204
Merged-chr8-91051807-4	chr8	91051728	91051928	+	664.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001310530, exon 38 of 38)	exon (NM_001310530, exon 38 of 38)	-18229.0	NM_001282001	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	3.5122127740738	3.57895984311107	3.56863646322886	3.69410763401367	3.84753734519795	3.44133358792476	3.7545200365237	3.51085050594261	0.191311654794894	0.697196282669747	0.87764810066762
Merged-chr2-163939815-3	chr2	163939721	163939921	+	985.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21138.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	4.95381578134756	4.31663047487533	4.77455998053484	5.40875859735553	3.59124925178501	3.81273453794311	3.86793388166067	3.60699137274364	-3.25507243930922	7.33687531582363e-10	4.84444757054741e-08
Merged-chr8-26698746-4	chr8	26698681	26698881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125642.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	8.29803411102393	8.21320557841373	8.50623164402709	8.33661873743557	8.47063611424093	8.42539988249589	8.37309244107296	8.10619464216225	0.0156138840881974	0.925011698070766	0.972345566012628
Merged-chr11-59578357-3	chr11	59578297	59578497	+	894.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6659.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	3.72040144290488	3.20837684140596	3.26314307551345	3.32637605859738	3.2504346902024	3.43688467436258	3.25152838096909	3.3782058363597	-0.218405982493132	0.687285246541082	0.872193208407699
Merged-chr9-38718293-4	chr9	38718190	38718390	+	969.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172767)	promoter-TSS (NM_172767)	22.0	NM_172767	67776.0	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	4.73686105532431	4.53521553104613	4.81819730603492	5.12735508123063	4.89944115170723	5.20607963259922	5.2466691637764	5.15555700989095	0.550391301645428	0.115703500382741	0.376388305895016
Merged-chr1-82839460-4	chr1	82839357	82839557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010472)	promoter-TSS (NM_010472)	-3.0	NM_010472	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	7.25282738746886	7.25960399689686	7.36678151155645	7.47297373496088	6.99348257588917	7.4093156041164	7.03403308325415	7.14864860914576	-0.269485350602499	0.165135600432942	0.455712282526902
Merged-chr10-80757923-3	chr10	80757799	80757999	+	860.577759	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199322, intron 1 of 27)	intron (NM_199322, intron 1 of 27)	2696.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	3.60805895336876	3.71743842566167	3.31647755430995	2.91566677720561	3.51295519565837	3.67459037676035	3.69275471786204	3.7070556838601	0.723135243907185	0.205693692866999	0.509414124928853
Merged-chr2-11568125-4	chr2	11568033	11568233	+	876.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-14204.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	4.20860547309134	3.90981652011088	4.41710263943793	4.13560692158011	4.29525975357097	4.24087531019254	3.99830245628576	4.37532792174663	0.157190697858746	0.704631485522411	0.881318675569763
Merged-chr4-155992511-4	chr4	155992400	155992600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011341)	promoter-TSS (NM_011341)	178.0	NM_080445	117592.0	Mm.440185	NM_080445	ENSMUSG00000050796	B3galt6	BB129894|GalTII	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	protein-coding	6.994206903329	7.54341280655677	7.09344113071105	6.81813582180051	6.83209287998292	7.2702466713885	6.75359836505375	7.24334336063178	-0.132529832823982	0.588697253344831	0.819824733836119
Merged-chr2-3769439-3	chr2	3769343	3769543	+	795.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	55985.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	3.60365528621337	3.78117352065774	3.77936725047001	4.13205862951045	4.04329547786895	3.84232198022173	4.00989621907038	4.15347009254408	0.433463169989008	0.355663610308767	0.66236996646174
Merged-chr15-27919708-4	chr15	27919616	27919816	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	106132.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	5.14725872626642	5.16117210846204	5.44002590587524	4.81769114301301	5.43834857501566	5.28991993786228	5.02130370098998	5.23936879713142	0.224226754015347	0.490207431480014	0.762160607354927
Merged-chr5-125348628-4	chr5	125348533	125348733	+	981.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-7539.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	5.41131302482342	5.60823526717102	5.02738589269396	5.38443462882778	5.37077725606516	5.0079900920037	5.176562602189	5.46254789392522	-0.190728209262837	0.539794015866961	0.792406302070178
Merged-chr13-104789887-4	chr13	104789786	104789986	+	822.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360094, intron 10 of 13)	intron (NM_001360094, intron 10 of 13)	27067.0	NM_026072	67285.0	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	4.65797345232307	4.16188173140615	4.03669438735611	4.33449112272901	4.92745198582476	4.21911920098117	4.44853236198866	4.50653670234763	0.559768223770138	0.186661726877867	0.484657293989922
Merged-chr1-133133671-4	chr1	133133572	133133772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133819, intron 1 of 1)	intron (NM_133819, intron 1 of 1)	2506.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	8.0210885239635	8.10173617195744	7.86622660685581	8.06258172084573	8.23804707632263	8.06598916077463	7.97740337651854	7.9413443901659	0.0604042800027639	0.716414871222774	0.8866074790069
Merged-chr2-148573348-4	chr2	148573248	148573448	+	944.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99267.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	4.49375865933021	4.73283098890496	4.49447828026066	4.20775483789731	4.7626956663852	4.62583133605217	4.04698157264718	4.26970962422528	-0.0509258585921591	0.904247094958718	0.964559678221358
Merged-chr7-84196445-3	chr7	84196340	84196540	+	944.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44547.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	3.4605871486435	3.60874861451352	3.46102793988023	2.93131155632579	3.96645472254277	4.49015157649131	4.15337136848303	3.81182568658974	2.25921474315175	2.88036504555915e-05	0.000700928217360188
Merged-chr2-128796669-4	chr2	128796552	128796752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 18 of 18)	intron (NM_008587, intron 18 of 18)	-21651.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	6.39975134955916	6.57832717572835	6.52837189385203	6.7884272162781	5.73419284570013	5.73313068223416	6.00237301501092	5.88686628512075	-1.15636734000636	1.34034628661406e-06	4.56480901123935e-05
Merged-chr10-77613682-4	chr10	77613575	77613775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_125903)	promoter-TSS (NR_125903)	-34.0	NR_125903	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	6.52762957979264	6.43778586281305	6.21160762102959	6.29494690711392	6.47736493675324	6.40753700290507	6.18006183950007	6.22702633378295	-0.0510498149124473	0.821911532822002	0.93193005280262
Merged-chr5-102640012-3	chr5	102639908	102640108	+	645.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029270, intron 2 of 9)	intron (NM_029270, intron 2 of 9)	-128802.0	NM_001286468	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	3.31051237820991	3.39779765375519	3.53243029373408	3.50992254196822	3.32662446517799	3.59558156512744	3.35747357882835	3.30928693352152	-0.161402746209056	0.753460593272906	0.902798885097597
Merged-chr2-164444600-4	chr2	164444476	164444676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1388.0	NM_011521	20971.0	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	6.04180115375121	6.17508444382816	5.66608914050151	5.47036368704522	6.0213999227069	6.27618640343149	5.79111954472283	5.68917926055367	0.168207258483924	0.572660929632965	0.811269650313368
Merged-chr3-146329057-2	chr3	146328957	146329157	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	49887.0	NR_033542	100038607.0	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	-	predicted gene 10636	ncRNA	3.07172320848877	3.06339128386012	3.01131994119616	2.676543768754	2.94974209893942	3.12261306718611	3.06037289720183	3.23713279458681	0.57494088922104	0.341406825466672	0.650445218284962
Merged-chr4-133672591-4	chr4	133672499	133672699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145956)	promoter-TSS (NM_001145956)	48.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	6.72715637287167	6.98159720182666	6.69937658751471	6.36858848245885	6.25310639578918	6.95999912711213	6.49348000776072	6.55536671747876	-0.176225212242722	0.490255899918613	0.76216937207179
Merged-chr18-56799844-1	chr18	56799744	56799944	+	661.0	f0_balb.idr	intron (NM_177115, intron 3 of 4)	L1MC1|LINE|L1	92031.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	2.96816643754105	2.96259237950698	2.96855373917955	3.25934841642586	2.67148938500211	2.58458179669012	2.77294978077464	2.96698740282186	-1.3925617237184	0.0388298222954116	0.197942270369197
Merged-chr13-9457202-4	chr13	9457101	9457301	+	938.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	ORR1F|LTR|ERVL-MaLR	180676.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	5.12035019418282	4.79798212574079	5.18232621076389	5.29095628219797	4.7891147365791	4.81229590096484	4.78032820269529	5.31938573414203	-0.340133109846663	0.325557540609536	0.637107120396079
Merged-chr11-99187001-4	chr11	99186896	99187096	+	981.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31919.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	6.06122260747761	6.65973090241158	5.52620256899274	5.21411311780597	6.47947633383406	6.31915378645124	6.25804399592734	5.42407289858637	0.276748785527105	0.637988544930745	0.847040716325261
Merged-chr11-97557144-4	chr11	97557047	97557247	+	899.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 1 of 19)	intron (NM_018873, intron 1 of 19)	17979.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	3.71815760296049	4.28717384712434	4.15804049925508	4.25542826223712	4.40805558390061	4.18537280067244	4.09300943132617	4.40839651013537	0.374639999851758	0.386174313090048	0.687523230791116
Merged-chr2-167815316-4	chr2	167815158	167815358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117069.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	7.20168900470387	6.97653891106859	7.05589420701322	6.77946212505797	7.07598047036757	6.95208638900073	7.19832913303475	6.92482125792192	0.0634527989468955	0.754683087978757	0.903394260200158
Merged-chr11-107473311-4	chr11	107473213	107473413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2593.0	NM_145823	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	5.72527873582142	5.74362517467481	5.07887451878464	5.47048731553954	5.53882381597242	5.40153777583386	5.41606752344288	5.6015051759897	-0.0619657036797866	0.834543421884373	0.936929006230221
Merged-chr16-55687708-4	chr16	55687605	55687805	+	909.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134433.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	4.93864159830552	4.91984138824253	4.70288279571228	4.40062747886775	4.47410343151707	4.75998263471656	4.3924132729539	4.31271547136236	-0.554983031618593	0.153367432946831	0.4379840964534
Merged-chr1-91282750-3	chr1	91282648	91282848	+	875.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355764, intron 9 of 10)	intron (NM_001355764, intron 9 of 10)	-15590.0	NM_016717	50880.0	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	3.57688614830235	3.92785292409648	3.52031842930872	4.19751259949573	3.16826652981749	3.37865992588263	3.6173133426763	3.62998270745551	-1.23845102944733	0.0273065945904311	0.157444803268716
Merged-chr6-28319297-4	chr6	28319193	28319393	+	920.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57692.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	4.4458273911254	4.05194948122058	4.48801671713042	4.23585278469022	4.56892415337455	4.39445952068579	4.61927039423721	4.74231270758548	0.644904316188711	0.0882655949455471	0.324115599599108
Merged-chr8-119781735-2	chr8	119781635	119781835	+	740.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-3319.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	3.28821069065926	3.47091592066945	3.23145404999906	2.9200711603025	3.47501690515211	3.08347684924066	3.21933700789803	3.17004299858118	0.0570610181757551	0.922791843824789	0.971413012934631
Merged-chr3-137981592-4	chr3	137981509	137981709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310753)	promoter-TSS (NM_001310753)	-60.0	NM_011932	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	7.42768040328671	7.45093937767909	7.22775444766289	7.39786387398847	7.29412214474001	6.87058176876151	7.20240790911401	6.92900572066405	-0.385251114946373	0.0507370651628928	0.233532538295682
Merged-chr4-128706732-4	chr4	128706615	128706815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 2 of 14)	intron (NM_018774, intron 2 of 14)	17977.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	7.20539337129534	7.7642836797915	7.3224472912127	6.94736000807956	7.18991560745321	7.05918420813968	7.12574148940245	6.89037964136692	-0.361218300812483	0.121594103952912	0.386243714577393
Merged-chr5-118404620-4	chr5	118404513	118404713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-156106.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	7.89066476145644	8.6363369564538	8.52122997034679	8.24115149488117	8.07194612919572	7.85358788201647	8.31956896992965	8.17845594815986	-0.300763209021163	0.148839008964396	0.430746567150915
Merged-chr9-50818293-4	chr9	50818214	50818414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045601, intron 12 of 13)	intron (NR_045601, intron 12 of 13)	-38610.0	NM_001034085	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	5.45035868286108	5.89387142072546	5.29435641470597	5.32070657920372	5.81943097373713	5.65665281330181	5.96421563858231	5.25695708138537	0.327244963765744	0.296706703806126	0.608626834590017
Merged-chr4-66822698-4	chr4	66822612	66822812	+	938.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4839.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	4.91744040001255	4.6027254023919	4.8862943217936	5.15648182025076	4.39062822433892	4.04797939647932	4.57459781564671	4.46471269091944	-1.16097874192261	0.00291508261497051	0.0312583105530259
Merged-chr4-86672017-4	chr4	86671937	86672137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1978.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	7.47892998453077	7.29960264145074	7.61348242421005	7.27097799443942	7.55957974825672	7.80586115175127	7.51591586818299	7.37768113610829	0.210941432379747	0.269608539450142	0.581265068287797
Merged-chr9-106308763-4	chr9	106308646	106308846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	27685.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	6.06334891460283	5.49132937024077	5.76227501781883	5.68287745737664	6.18470872458484	6.41195517549656	6.20584150522117	6.19696383864296	0.775838447251377	0.00204468656926297	0.0237847271308333
Merged-chr14-66225785-3	chr14	66225725	66225925	+	847.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-12001.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	3.55680729926291	3.52396981477379	3.50082850215456	3.48202899859862	3.69896804995137	3.67363900318493	3.54350925563018	3.80500330793641	0.542283485127324	0.248450443785551	0.559563793766983
Merged-chr2-160360645-4	chr2	160360539	160360739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6426.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	6.63322013211823	6.98735993555683	7.27163078150187	7.38706238875582	6.43274068936851	6.87419156742417	6.55177816650181	5.97799986545698	-0.868183799890913	0.00139685104209137	0.0176319312511122
Merged-chr18-11352533-4	chr18	11352416	11352616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-280760.0	NM_001252495	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	6.0482487681969	6.11966633205674	5.88537587210896	6.16116097432572	5.31812306575982	5.19556361244907	5.35442058645645	5.58677311076299	-1.16248986028477	1.37857092703693e-05	0.000368061890530989
Merged-chr19-32775017-1	chr19	32774917	32775117	+	563.0	f0_balb.idr	intron (NM_008960, intron 1 of 8)	B3A|SINE|B2	17440.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	2.60244339864517	2.6499450716925	2.54323593552093	2.58740125450336	2.36747311429532	2.29467803244311	2.19190696327598	2.34497210909006	-1.81290582789645	0.0211643032551797	0.132908798037346
Merged-chr6-124682430-4	chr6	124682342	124682542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 1 of 11)	intron (NR_149320, intron 1 of 11)	19338.0	NM_145130	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	5.55199776521231	5.5844503189638	5.65633888732862	5.41214978519771	5.78765855015112	5.61584375081534	5.52505745062456	5.31323000634045	0.0655938387014825	0.813751757580264	0.92808902984787
Merged-chr7-127080271-4	chr7	127080188	127080388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-11148.0	NM_178901	101602.0	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	5.99857645140439	5.94910006127716	6.34595001120238	6.21007342753485	6.82837522878443	6.69987174973601	7.27795371570414	6.81093646819792	1.13801202106681	1.96450934857521e-06	6.44980677685584e-05
Merged-chr1-173809482-4	chr1	173809388	173809588	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-42569.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	5.4077258393982	5.76805016929581	5.53616007215497	5.29228045738884	4.75270290496028	4.59925557277635	5.2403151005136	4.84071773127626	-1.18239591190103	0.000505421551537158	0.00777902433275142
Merged-chr1-131942991-4	chr1	131942860	131943060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19955.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	5.97225358683359	5.77117269103115	6.28459360015654	6.45389337273217	5.89156559563481	5.51099378064384	5.96452504981665	6.03354710255353	-0.45985216733487	0.105329428194375	0.357130632565496
Merged-chr15-34083809-2	chr15	34083710	34083910	+	929.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357925, intron 1 of 10)	intron (NM_001357925, intron 1 of 10)	1091.0	NM_001357925	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	4.00480293665766	4.20452402572801	3.95753612527717	4.02689034232249	3.63309299502337	3.86600627409478	3.84056990389029	4.09347421837337	-0.534215986649032	0.231609342625261	0.541189724861251
Merged-chr5-98319929-3	chr5	98319797	98319997	+	963.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9407.0	NM_001024614	75784.0	Mm.443240	NM_001024614	ENSMUSG00000057816	1700007G11Rik	4930428O21Rik	RIKEN cDNA 1700007G11 gene	protein-coding	3.77834970697337	3.63395389061391	4.44569060889581	5.06253958195016	3.52547476545912	3.34372933514191	3.70492268604724	3.93968576362975	-1.8899751758105	0.0497926582977284	0.231072605618334
Merged-chr8-105714361-4	chr8	105714270	105714470	+	889.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6081.0	NM_027655	71046.0	Mm.280888	NM_027655	ENSMUSG00000013158	4933405L10Rik	-	RIKEN cDNA 4933405L10 gene	protein-coding	4.25330418117977	3.81976344213943	3.91559130195239	4.10429090833351	3.97173029700253	4.38163803490202	4.10158845440095	4.48308771364862	0.526409187208695	0.226788115815515	0.535435155136788
Merged-chr5-64970085-4	chr5	64969987	64970187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026667)	promoter-TSS (NM_026667)	12.0	NM_026667	68303.0	Mm.258545	NM_026667	ENSMUSG00000029185	Fam114a1	1190001N04Rik|9130005N14Rik|Noxp20	family with sequence similarity 114, member A1	protein-coding	6.02357908113828	6.3439927514475	6.06848798899159	6.0229775760001	6.25218173210031	6.08560335540389	6.30650836231948	6.33444165429924	0.201049298657071	0.388573546938579	0.688981838974675
Merged-chr9-53356964-3	chr9	53356866	53357066	+	863.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176846, intron 4 of 5)	intron (NM_176846, intron 4 of 5)	-27057.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	3.66205401642176	3.28259399794028	3.34016201462122	3.51714309824555	3.32080356819481	3.32499915699579	3.38706356055796	3.83670574545935	0.0799661209776496	0.881928245196462	0.955514518623761
Merged-chr9-50528681-4	chr9	50528570	50528770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011220)	promoter-TSS (NM_011220)	-29.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	7.45527635262393	7.45521212022794	7.73820124933871	7.50608374691647	7.64483390296326	8.04262554820704	7.6605690359346	7.79440913244781	0.327626223284841	0.0754933350228416	0.296749508150588
Merged-chr11-29808740-4	chr11	29808653	29808853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 17 of 41)	intron (NM_146016, intron 17 of 41)	16915.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	7.78117490388619	7.64409728073865	8.1517475759104	8.60389601453219	7.67743806427232	7.2824416363454	8.22041908185154	7.93394972268532	-0.36606204074217	0.172604821132798	0.466114218203635
Merged-chr4-145239444-4	chr4	145239323	145239523	+	893.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	7447.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	3.78738447261231	3.90996078808637	3.39134066961062	3.81792333081304	3.74248991892655	3.90746977339969	3.56279358314759	3.51555344107482	-0.165178699755719	0.740240234508827	0.897756475187998
Merged-chr10-67311609-4	chr10	67311496	67311696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26315.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	4.79362446192854	5.33540274606485	5.32976440499658	4.92033295113138	4.6211403001808	4.76279944427838	4.77182583066663	4.8297922382631	-0.737426723730528	0.033816984132648	0.181377372735871
Merged-chr2-90496497-3	chr2	90496388	90496588	+	906.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-17314.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.82443407073857	4.09268117948702	3.6633232039632	3.8032330987887	3.82183970849382	3.83825371732427	3.99495995059926	3.60289315106111	-0.0960836590757195	0.835655904753547	0.937516254002898
Merged-chr10-111508786-2	chr10	111508686	111508886	+	560.416626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009344)	TTS (NM_009344)	2500.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	2.45041355854749	2.44939048047184	2.37727560412729	2.57625591660007	2.64408167164036	2.69088148995378	2.63944247145047	2.76468361024885	1.07848908962823	0.114328999772381	0.373929323843142
Merged-chr17-34301409-2	chr17	34301329	34301529	+	883.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4438.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	3.76004633635769	4.33038194727119	3.37966731967983	3.12663983167734	3.65312773617943	3.29357629487491	3.36711104071965	3.24610016283692	-1.04208542998729	0.100245814648973	0.347474888770357
Merged-chr7-35163845-4	chr7	35163750	35163950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22535.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	5.50107469324843	6.11379120733696	5.28698699488843	5.15915690936009	5.69618584708599	5.64959578654089	5.68109793189537	5.44035943066649	0.0935476623031672	0.777210670792637	0.913069887376198
Merged-chr7-30353590-4	chr7	30353527	30353727	+	846.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9145.0	NM_175478	233067.0	Mm.23157	NM_175478	ENSMUSG00000036957	Lrfn3	A530045B06Rik|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding	4.94126318668184	4.73519952180285	4.29322876480141	4.7300739981579	4.15162587474761	4.21774384772196	4.07382833684483	4.14166026118223	-1.30887928500068	0.00117532787670191	0.0153164890032525
Merged-chr19-45560665-4	chr19	45560583	45560783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020032)	promoter-TSS (NM_020032)	98.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	6.19277245091514	6.23858799764424	6.66185938688535	6.10931679660019	6.04152116558748	6.20353287227137	5.97347034991954	6.06622986357067	-0.361096424011491	0.147150774384549	0.427939308793208
Merged-chr6-146222808-3	chr6	146222698	146222898	+	997.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	279425.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	4.51078854389367	4.62671632749353	4.39781873597195	4.37675329179573	4.15558811097025	3.98801900128724	3.79022562766334	3.97687744435986	-1.23116550520667	0.00364705120202127	0.0372390557321291
Merged-chr16-57570729-4	chr16	57570633	57570833	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001177871, exon 2 of 2)	exon (NM_001177871, exon 2 of 2)	21491.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	5.6268331556186	5.56894737349016	5.8887194279765	5.96451844034869	5.47151717422622	5.66542093614264	5.85858486331041	5.29547400502874	-0.3302921408851	0.248785679638507	0.560019054692692
Merged-chr4-35166031-4	chr4	35165940	35166140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-8556.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	6.57503752771341	6.19217686339741	6.05474135430394	6.53971370080721	6.29548410654259	6.20967680126582	6.2278888825568	6.00512053421535	-0.265555601451291	0.280821086111666	0.592995625513841
Merged-chr8-36172452-3	chr8	36172359	36172559	+	835.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16449.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	4.31996986477414	4.18520014516387	4.28429062415628	4.21006443128857	3.46150854333612	3.61114844566713	3.41069185999017	3.42006111434886	-2.44192065762795	1.76865546700464e-06	5.85812598817699e-05
Merged-chr4-155068165-4	chr4	155068070	155068270	+	985.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042407, intron 2 of 5)	intron (NM_001042407, intron 2 of 5)	1140.0	NM_001042407	668173.0	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	5.67619033127172	5.31737580965883	4.88652684931483	5.24449842956339	5.59973640826316	5.70074255405328	5.55091286285265	5.52332335872622	0.501944677957689	0.0958997002687283	0.33919920321148
Merged-chr6-33501243-3	chr6	33501160	33501360	+	823.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	252132.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	3.49595348575333	3.21470209973649	3.38006624920658	3.51959221453364	3.61832989265657	3.7208500318495	3.36802159714725	3.79066900422674	0.706557512121678	0.167526107596451	0.459229023053524
Merged-chr10-42762690-2	chr10	42762590	42762790	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359285, intron 1 of 19)	intron (NM_001359285, intron 1 of 19)	1194.0	NM_153055	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	3.25984147408591	3.19000499190537	3.56018504181946	2.91726476679338	3.23334521969114	3.12347026610652	3.06871432746517	3.20092602151525	-0.314842449085929	0.594914327688232	0.823648310326784
Merged-chr2-126500724-4	chr2	126500617	126500817	+	870.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359975)	promoter-TSS (NM_001359975)	-870.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	3.87642672929362	3.99668695882119	3.98113351180432	3.97516388430251	4.03836442321245	4.24802206630073	4.14961096244893	4.2492052258864	0.548624339542086	0.17874760982045	0.474670799858595
Merged-chr14-54463269-4	chr14	54463158	54463358	+	923.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022993)	promoter-TSS (NM_022993)	-889.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	4.79102516230144	4.64059432878982	4.42992109038199	4.31038129785456	4.86111278648811	4.69496192191101	4.90017576842701	4.51671379406249	0.46415212340245	0.204870615669929	0.508383961538483
Merged-chr18-52270614-3	chr18	52270519	52270719	+	978.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-60917.0	NM_026286	67634.0	Mm.179144	NM_026286	ENSMUSG00000024510	Ftmt	4930447C24Rik|FerH|Fth3|MtF	ferritin mitochondrial	protein-coding	4.66012495554679	4.34497281062852	4.88091948484306	5.02020119543495	3.37368895193552	3.74204388258072	4.28667531857542	3.94312783873715	-2.2502601766665	1.64869984662556e-05	0.000430968807869851
Merged-chr13-20171240-1	chr13	20171140	20171340	+	802.25	f0_balb.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	80733.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.87313546488087	3.54383998528645	3.78004035622223	4.02889047066683	3.83310579431289	3.43062133306538	3.61110429826301	3.44748953424748	-0.684958450553252	0.181652427139244	0.478311096108792
Merged-chr15-67903165-4	chr15	67903073	67903273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	355683.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	6.52811929657381	6.21981787506438	6.31071647244557	6.29232115999121	6.20276466666562	6.50428706887572	6.26001436926904	6.08623866939797	-0.105531993230455	0.647511115650714	0.851667779256884
Merged-chr2-13785457-4	chr2	13785359	13785559	+	910.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145838, intron 2 of 7)	intron (NM_145838, intron 2 of 7)	8061.0	NM_145838	241230.0	Mm.330004	NM_145838	ENSMUSG00000003418	St8sia6	1700007J08Rik|AI314453|AI875066|ST8SiaVI|Siat8f	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding	4.51862985676296	4.45436712501589	4.31170572969825	4.2910692437608	4.85862192675995	4.18996644714094	4.3364202487976	3.9487152696689	0.00662483929516926	0.988011661912272	0.995370064932717
Merged-chr18-31911229-4	chr18	31911075	31911275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026006, exon 1 of 1)	exon (NM_026006, exon 1 of 1)	728.0	NM_026006	67158.0	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	6.98814024611388	7.05394339914688	7.2399318890344	7.00609343289344	6.79605535650709	7.07473259003935	7.01533511194611	6.85160785409432	-0.191896000588938	0.32615526394268	0.637702349643975
Merged-chr2-167505422-4	chr2	167505324	167505524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153838, intron 1 of 4)	intron (NR_153838, intron 1 of 4)	1981.0	NM_001360930	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	5.95524029485153	6.02822193298856	5.51804502637317	5.39623068968173	5.96112962682957	6.36725710175284	5.73917609356949	6.11526728559113	0.511232787938294	0.0826552655968072	0.312270312845927
Merged-chr1-170545561-4	chr1	170545457	170545657	+	923.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 1 of 9)	L1MC4|LINE|L1	11553.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	4.32455557896292	4.25265077891753	3.99040787481575	4.11820929294879	4.36215369039607	3.99948944129694	4.4981902226105	4.40390350449046	0.387671015093564	0.338248912710943	0.647837136956523
Merged-chr1-59762830-3	chr1	59762708	59762908	+	874.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1471.0	NM_007561	12168.0	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	3.66690950569951	3.69535991671064	3.50475400838817	3.46747414220321	3.5110655718461	3.62057712582619	3.60092240550102	3.76316978439512	0.136189563421336	0.776479099910745	0.912932991254018
Merged-chr7-83616439-4	chr7	83616333	83616533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177695, intron 18 of 22)	intron (NM_177695, intron 18 of 22)	-15584.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	7.27201861815888	7.22777747337102	7.53176562423842	7.77224599424627	7.15014956594208	6.99542135798785	7.3676218540518	6.87145238642017	-0.497308599994958	0.0235830000355911	0.142654402951758
Merged-chr16-29561035-3	chr16	29560949	29561149	+	825.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16185.0	NM_001164613	224079.0	Mm.54954	NM_172613	ENSMUSG00000038094	Atp13a4	4631413J11Rik|4832416L12|9330174J19Rik	ATPase type 13A4	protein-coding	3.33596609651261	3.45195288797763	3.08174890127477	3.28482747229755	3.52145077718548	3.32674255781675	3.37988051572804	3.59515632094763	0.576871626853227	0.271850113169871	0.583446983425847
Merged-chr1-143917314-2	chr1	143917214	143917414	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86835.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	3.27161349827898	3.10299940164623	3.57127688017173	3.01289778055109	3.35801893572078	3.20273568221729	2.94720590870035	3.21283656348216	-0.214346965033174	0.71900500179567	0.887712867262946
Merged-chr13-113487232-4	chr13	113487127	113487327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	15617.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	8.10368388280747	8.56673889674087	8.72264395944805	8.33065971438213	8.25350086095731	8.4142913531458	8.26138717245017	8.317232663722	-0.175721603741403	0.334426821303183	0.645011968934814
Merged-chr5-72793812-3	chr5	72793727	72793927	+	937.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	-41050.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	3.74985810106632	3.7752894462448	3.75039299265838	4.07556784316648	3.52538711348637	3.45030586426762	3.92074503030098	3.52803913817995	-0.724223041629147	0.146198159710125	0.426226056266237
Merged-chr15-25605588-4	chr15	25605531	25605731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16919.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	6.56519988787345	6.65987929917776	7.24816250856835	6.83040053490328	6.47714918717345	6.30560428239572	6.65546620024351	6.05055859475629	-0.658761600710094	0.00998590937813313	0.0788274419015347
Merged-chr18-82526052-4	chr18	82525971	82526171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 3 of 3)	intron (NM_001025245, intron 3 of 3)	-28392.0	NM_001025258	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	7.88645856094052	7.76701802742402	7.82804230462532	8.06761705731799	7.73216052142607	7.94284896904274	8.16876030270293	7.85296016980041	0.0403945982576659	0.823636267760588	0.932356535727038
Merged-chr5-64381017-4	chr5	64380936	64381136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	86906.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	7.55723583738043	7.65917917115517	7.5413604690946	7.35949262468418	7.0949838322917	7.22807566340735	7.10087528490756	6.93862270382084	-0.58544709434907	0.00173003730199448	0.0208892833110543
Merged-chr5-31194111-4	chr5	31194038	31194238	+	938.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127355)	promoter-TSS (NM_001127355)	834.0	NM_153680	266781.0	Mm.6118	NM_153680	ENSMUSG00000029146	Snx17	5830447M19Rik|AI790646|D5Ertd260e|b2b1625.1Clo|mKIAA0064	sorting nexin 17	protein-coding	4.1686212445344	4.37450574631694	4.1201994728632	4.4744318486986	4.18693450637467	4.3424605903168	4.28688090295222	4.30340465065908	-0.0786577846281319	0.842366798474939	0.940176660530117
Merged-chr8-85025615-4	chr8	85025497	85025697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357202)	promoter-TSS (NM_001357202)	-310.0	NM_001357202	56495.0	Mm.41475	NM_019652	ENSMUSG00000052456	Asna1	1810048H22Rik|ArsA	arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	protein-coding	7.47769251733005	7.36039081368691	7.03734719935696	7.27009335020918	7.60570510281106	7.33756237624063	7.28812570634302	7.0953140732732	0.0769694147590308	0.706757068014073	0.882215762445699
Merged-chr4-134704396-4	chr4	134704292	134704492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207237)	promoter-TSS (NM_207237)	-102.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	8.49206355992495	8.46622370740406	8.18806328903119	8.28920085898368	8.55090789303603	8.39626203190081	8.34839884021768	8.23704624573231	0.0363313361482307	0.825334042725383	0.933075791409626
Merged-chr1-59912924-4	chr1	59912821	59913021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037725)	promoter-TSS (NM_001037725)	-85.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	7.89962473167284	7.8988629283044	7.81631380489339	8.03026807224299	8.27183193808414	8.17862079392147	8.44500067987714	8.1684020819223	0.450752061198202	0.00573738334147108	0.0525925574839112
Merged-chr13-21832143-4	chr13	21832034	21832234	+	964.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175657).2	promoter-TSS (NM_175657).2	24.0	NM_175657	319161.0	Mm.261664	NM_175657	ENSMUSG00000069305	Hist1h4n	-	histone cluster 1, H4n	protein-coding	5.81378801251338	6.002307473969	6.45526719940626	5.80416181718598	5.43572694711356	5.57532578642167	5.63399835992924	5.81066263427673	-0.687720808326364	0.0168747890699122	0.114013347053373
Merged-chr2-150672169-4	chr2	150672070	150672270	+	895.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3930.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	4.75228173270805	4.79587445681923	5.05654158841374	5.35010150361474	4.55192760916405	4.37837896904899	4.65277667445516	4.63036308072287	-0.984804238483432	0.00764111446400471	0.0650271265463165
Merged-chr15-66742743-4	chr15	66742645	66742845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 34 of 47)	intron (NM_009375, intron 34 of 47)	71975.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	6.25368776757421	6.27940951778404	6.27310981943259	6.18064839955811	5.93323097826273	5.94466067804058	6.53003550577642	5.76123490624043	-0.258793323928026	0.326861030150322	0.63844683913915
Merged-chr8-45410284-4	chr8	45410182	45410382	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357316)	promoter-TSS (NM_001357316)	98.0	NM_001357316	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	5.33261318391089	5.08615066335103	5.15918431697199	5.20228952416616	5.2350524966241	4.85294319768924	4.7380718268172	5.09176045150742	-0.359692911576831	0.26434608389494	0.576455127446606
Merged-chr11-3182008-1	chr11	3181908	3182108	+	1000.0	f1_balb.idr	intron (NM_030207, intron 4 of 32)	intron (NM_030207, intron 4 of 32)	11455.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	4.62400045840917	4.26459666119856	5.44452972470122	4.73631234629705	3.10689082165728	3.41757872872402	3.4393541901754	3.52553628332494	-5.64404418032508	8.58831090773115e-10	5.57762209946529e-08
Merged-chr5-122379965-4	chr5	122379871	122380071	+	952.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024216, intron 3 of 7)	intron (NM_024216, intron 3 of 7)	7463.0	NM_024216	68080.0	Mm.266328	NM_024216	ENSMUSG00000029464	Gpn3	A930018B01Rik|Atpbd1c|D5Ertd708e	GPN-loop GTPase 3	protein-coding	4.80433023127049	5.17225083114727	4.60566730248448	4.63731512753623	5.14068504617585	4.60215302493419	4.95310508213154	4.46679349310471	0.0174466570785131	0.963918192738862	0.987192577581959
Merged-chr13-92053235-4	chr13	92053094	92053294	+	902.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65152.0	NM_009027	19418.0	Mm.248630	NM_009027	ENSMUSG00000021708	Rasgrf2	6330417G04Rik|AW048350|Grf2|Ras-GRF2	RAS protein-specific guanine nucleotide-releasing factor 2	protein-coding	4.34753184965276	4.59389476297473	4.34823216729236	4.48715605491869	3.59067715746629	4.25031588507082	4.00506819663902	4.07119041801871	-1.19195462318818	0.00709314525870374	0.061486996559835
Merged-chr16-92301226-4	chr16	92301130	92301330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138743)	promoter-TSS (NM_138743)	-73.0	NM_138743	68936.0	Mm.21698	NM_138743	ENSMUSG00000051989	Smim11	1190017O12Rik|C21orf51|Fam165b|Smim11a	small integral membrane protein 11	protein-coding	6.65597658464142	6.5245946173954	6.09321902697639	6.38966509492056	6.78681333653539	6.53762828396325	6.45133780768419	6.56124977460076	0.2439014858644	0.290910512921502	0.603202033303413
Merged-chr7-110891699-4	chr7	110891650	110891850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194464, intron 15 of 20)	L1MEd|LINE|L1	-13235.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	5.51043647391992	5.30928154426438	6.09221239011934	5.40308947394052	5.7090555582619	5.95130369913402	5.96474682019213	5.84219187191618	0.434258568701363	0.142908681198991	0.42092597116043
Merged-chr16-10417501-3	chr16	10417406	10417606	+	889.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011955, intron 3 of 10)	intron (NM_011955, intron 3 of 10)	5568.0	NM_011955	26425.0	Mm.29037	NM_011955	ENSMUSG00000022503	Nubp1	-	nucleotide binding protein 1	protein-coding	3.9679010512119	4.02309958061276	3.96846886788431	4.00677469578947	4.54100001243935	4.03897314654656	3.90116659031568	3.91475088065126	0.39432344074275	0.379363913128719	0.681941469992802
Merged-chr14-33240604-4	chr14	33240504	33240704	+	927.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	23781.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	5.30098372609001	5.25087043633592	5.46282624593513	5.79324787090155	4.75586665193419	4.68209033457227	4.79851871464564	5.01061096750119	-1.27936200121505	0.000115600112127739	0.00228961685723601
Merged-chr1-128643676-4	chr1	128643547	128643747	+	952.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51348.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	4.41157068882985	4.33011326725147	4.76613461013183	4.21666641533803	4.22861932951796	4.21440135066513	4.39184281177369	3.97682408364421	-0.541177103623539	0.193428962595018	0.493656512318064
Merged-chr14-65147211-3	chr14	65147100	65147300	+	624.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-49094.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	3.42859251301477	3.25031068523383	3.53917968817064	2.77886250827838	3.56054342681063	3.60444866090417	3.47076595619244	3.73225663217167	1.08787423829536	0.0650143274334939	0.271241709887384
Merged-chr11-78360456-7	chr11	78360368	78360568	+	819.428589	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008238, intron 8 of 8)	intron (NM_008238, intron 8 of 8)	13758.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	2.71993886310845	2.62873033992932	2.78083216263003	2.49533791452212	2.6068839039516	2.69548310706123	2.51285134232151	2.83700367608784	0.0705522641408359	0.915599214377108	0.968753005542634
Merged-chr17-28294592-4	chr17	28294496	28294696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 3 of 7)	intron (NM_011145, intron 3 of 7)	-18934.0	NR_028297	72775.0	Mm.201859	NM_028348	ENSMUSG00000007570	Fance	2810451D06Rik|AI415634|AW209126	Fanconi anemia, complementation group E	protein-coding	6.61459939079068	6.17639706330452	5.96401716512842	6.52139343320531	6.29456358593443	6.01678728710644	6.10902247860678	6.38018286778663	-0.21456831401142	0.405289607359557	0.702237410904421
Merged-chr16-20302404-4	chr16	20302276	20302476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005767)	promoter-TSS (NM_001005767)	-14.0	NM_001005767	381038.0	Mm.371737	NM_001005767	ENSMUSG00000033918	Parl	D16Ertd607e|PRO2207|PSARL1|PSENIP2|Psarl	presenilin associated, rhomboid-like	protein-coding	6.85871820743604	7.10614490568563	6.56303464766211	6.82781688295136	6.85100602034664	6.44177786607345	6.38866690930181	6.90680601904555	-0.254914780403111	0.282703770109909	0.594870751791803
Merged-chr4-133967315-4	chr4	133967232	133967432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016957, intron 1 of 5)	CpG	659.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	7.11327368685278	7.56776129965059	6.863499320457	6.7633129033122	7.43764570972603	7.6881980303981	7.04235673050763	7.35843501359793	0.390064125159918	0.116506688672899	0.377635281883107
Merged-chr13-30888682-2	chr13	30888582	30888782	+	734.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025588, intron 11 of 27)	intron (NM_025588, intron 11 of 27)	59079.0	NM_153072	210554.0	Mm.450571	NM_153072	ENSMUSG00000076430	Hus1b	-	HUS1 checkpoint clamp component B	protein-coding	2.99300067243188	3.04544572404388	2.99337166838823	2.85540998228827	2.89861213262771	2.74900929856414	3.20521338496227	3.26772706864326	0.319043401720458	0.602343088557409	0.827606962656652
Merged-chr11-116424257-4	chr11	116424161	116424361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9833.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	7.42315496311952	7.42580291819616	7.17310778738542	7.31075512896911	7.61034948671736	7.21629805107978	7.22633672884757	7.12085355351828	-0.0243129024773551	0.90326482288676	0.964209460531744
Merged-chr4-10977191-4	chr4	10977110	10977310	+	884.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30409.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	4.32188732060941	3.92287110313689	4.32255221549305	4.32445568365707	4.37638540722361	4.49659426155426	4.65281347537361	4.63784326995275	0.704773505387359	0.0706926228010026	0.285073378185517
Merged-chr7-140953358-4	chr7	140953266	140953466	+	898.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2595.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	4.03301090089609	3.96574877234787	3.87268196400502	4.16899869825964	4.24485100036773	4.39114300943924	4.11292944296687	4.38185528467881	0.646385874586554	0.116677972883996	0.378010707582057
Merged-chr1-152533959-4	chr1	152533875	152534075	+	878.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 12 of 17)	intron (NM_016846, intron 12 of 17)	91242.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	3.86464196617485	3.94960452826772	3.76380748565013	3.87038362239207	3.88803234441456	3.65033960931388	3.45845349859136	4.0853480656135	-0.196517435442171	0.681996253980798	0.869682098720609
Merged-chr19-44422347-6	chr19	44422236	44422436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14627.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	5.32979799468305	6.18262563364659	6.63808664394877	6.35504488013511	5.19024057843026	5.40851350154749	5.49485577024424	5.45807385008032	-1.34707399103833	6.34506496843322e-05	0.00138495976506626
Merged-chr13-77045505-1	chr13	77045405	77045605	+	683.0	f0_balb.idr	intron (NM_134071, intron 20 of 20)	intron (NM_134071, intron 20 of 20)	89963.0	NM_134071	105377.0	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	3.56480984136183	3.88586561315878	3.40788360795785	3.58505757520113	3.39972060525181	3.05512686862832	3.21777736607504	3.02061844762558	-1.55801843130226	0.00924157141953924	0.074601819292146
Merged-chr4-150472718-3	chr4	150472620	150472820	+	962.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 6 of 22)	intron (NM_001085492, intron 6 of 22)	179454.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	4.79376700990814	4.66962831052633	4.53047980254324	5.10980664069701	4.46202515941491	4.15296289805814	4.33214188571877	4.64738989576432	-0.872092552617344	0.0267768491922451	0.155498845447892
Merged-chr6-29694149-4	chr6	29694060	29694260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146173)	promoter-TSS (NM_146173)	-54.0	NM_001301407	232670.0	Mm.225289	NM_146173	ENSMUSG00000001763	Tspan33	1300010A20Rik|Pen	tetraspanin 33	protein-coding	6.59447399175335	6.76340269283665	6.31469425125896	6.9093463090394	6.66298809809336	6.34814341598151	6.70954927061813	6.42290250174624	-0.186056732382551	0.432120060890774	0.722198138555674
Merged-chr10-17624350-4	chr10	17624258	17624458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98870.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	5.84059829701586	5.91968963195082	5.56012336174236	5.96877713194945	5.79346043546508	5.67940528116913	6.04033151405857	5.338640401103	-0.164154638447285	0.5629231865693	0.805927740950101
Merged-chr5-139457562-4	chr5	139457384	139457584	+	926.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 1 of 4)	LTR106_Mam|LTR|LTR	3050.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	4.21483674266772	4.22271664937578	4.17103176943434	3.90483539251762	4.05559291384613	4.04522815896541	4.10705740623046	4.37625488247108	0.075175049278981	0.857235074835356	0.946239174364937
Merged-chr2-180126344-3	chr2	180126238	180126438	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144500, intron 1 of 13)	intron (NM_144500, intron 1 of 13)	6972.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	5.70011649444216	5.4162510347574	6.25299163109671	6.50988389575972	4.03111798667944	4.22269814384359	4.3798490760709	4.56195612249227	-3.54485659807472	1.67179779007864e-16	3.40965314899736e-14
Merged-chr12-52024682-3	chr12	52024582	52024782	+	705.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008159, intron 1 of 1)	intron (NM_008159, intron 1 of 1)	3381.0	NM_008159	14762.0	Mm.12890	NM_008159	ENSMUSG00000035148	Gpr33	-	G protein-coupled receptor 33	protein-coding	3.60881785577478	3.51637276474253	3.50369952110715	3.63864722748092	3.871696848828	3.30595262803521	3.18568627185833	3.5556202210538	-0.159904721336167	0.771212075735053	0.91036734532567
Merged-chr14-13901872-4	chr14	13901773	13901973	+	869.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59440.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	3.96606462390834	4.31904207653696	4.72412976285434	4.60169894112694	3.92066398901538	4.2544470115004	4.15952703105838	4.43827517563972	-0.576329933340441	0.192079426453422	0.491589934451005
Merged-chr3-137947038-4	chr3	137946914	137947114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	28459.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	6.80674335209376	6.77910598549648	6.45685455257574	6.37559955632973	6.22887085882822	6.54588456311982	6.18377406888255	5.96408524653899	-0.542341020323187	0.0287957896697665	0.163024057552824
Merged-chr7-145026925-4	chr7	145026832	145027032	+	877.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87007.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	4.45729018552676	4.76383618982324	4.41503691054881	3.9340625833396	4.70313894709873	4.45431864571843	4.43754483378946	4.53685327724619	0.287786409751542	0.490826364291387	0.762545540982874
Merged-chr2-27715403-4	chr2	27715300	27715500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	4817.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	6.16747496022449	5.49043660858248	6.22224210521657	6.35268607708288	5.70043117191563	5.59715134090963	5.75724273098957	5.65239241574549	-0.686119197949783	0.018415307518193	0.121194317174071
Merged-chr13-37592274-4	chr13	37592177	37592377	+	913.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-233761.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.49741527509234	5.02761193894283	4.45402994142391	4.44045263981419	4.57582249739321	4.33714394293509	4.81489698657997	4.69529010852668	-0.0193380264988873	0.960403803214291	0.985883800393479
Merged-chr11-11808963-4	chr11	11808856	11809056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163359)	promoter-TSS (NM_001163359)	6.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	8.61852521517204	8.42139797821846	8.38875857204228	8.71054108925275	9.18554353971185	9.17218189581885	8.96060095075682	9.2530795722028	0.747389455133112	2.89603027792833e-06	9.15755393836787e-05
Merged-chr11-60698988-3	chr11	60698882	60699082	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159405)	promoter-TSS (NM_001159405)	-708.0	NM_001159405	16897.0	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	LLGL1 scribble cell polarity complex component	protein-coding	3.66574121303045	3.18001732254208	3.2903973777794	3.33181573965763	3.05191484968005	3.78681649597727	3.55398325763388	3.28872573279554	0.23332601994967	0.687240290462753	0.872179806633532
Merged-chr16-35907622-4	chr16	35907538	35907738	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30832.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	5.28108066033457	5.27617903212863	4.84608481599735	5.05327588990893	5.18189004767523	4.98380406238472	5.2556018343708	4.88220809758181	-0.0633548617279244	0.843147038390211	0.940459539910433
Merged-chr2-126476287-4	chr2	126476194	126476394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	15259.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	7.31223593592587	7.47085627120793	7.75047837915528	7.8225567611032	7.2320903925138	7.34430204643837	7.29816081149764	7.48708377128011	-0.364703067909366	0.0652411164416144	0.271853262334485
Merged-chr13-98956466-4	chr13	98956385	98956585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	28080.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	6.1974266465894	6.4259857920905	6.52502855281976	6.45784772399711	6.41083016291384	6.31262467898545	6.50748669768372	6.56736969995056	0.0603666180802064	0.782077735180787	0.915222792194418
Merged-chr5-148907825-2	chr5	148907725	148907925	+	993.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153572, intron 3 of 10)	intron (NM_153572, intron 3 of 10)	20822.0	NM_153572	231912.0	Mm.397405	NM_153572	ENSMUSG00000041298	Katnal1	-	katanin p60 subunit A-like 1	protein-coding	3.04222565869843	2.89248296694712	3.27696892780444	3.00188922937577	3.31052121184882	3.15258530601653	3.20955945004673	3.27508979912925	0.7236158709121	0.195111656191661	0.495879585259548
Merged-chr4-144896519-4	chr4	144896363	144896563	+	858.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	3326.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	3.74508237585976	3.51029491156329	3.74563133154175	3.60406520062615	3.70362538102765	3.52812475023749	3.72975785955035	3.58838486191742	-0.0170894824779316	0.971196807094636	0.989661202321986
Merged-chr2-156967325-6	chr2	156967224	156967424	+	819.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355394, intron 1 of 15)	intron (NM_001355394, intron 1 of 15)	24379.0	NM_001355391	29812.0	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	3.90613945915566	4.23025830240436	3.58414244473821	3.52670939098696	3.72436672314176	4.02955399711943	3.7400356260066	3.69863278305205	-0.106222660916656	0.832896119871725	0.936153248426439
Merged-chr10-83095030-4	chr10	83094929	83095129	+	893.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021439, intron 2 of 2)	MIRb|SINE|MIR	109532.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	4.77571097015324	5.16571221914555	5.01211305105593	4.95748387380767	4.51734473664768	4.36363719537585	4.51241032952708	4.65732974395419	-0.994428850596049	0.00457774185275914	0.0444689676930605
Merged-chr11-120348516-4	chr11	120348423	120348623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038126)	promoter-TSS (NR_038126)	-28.0	NM_009609	11465.0	Mm.196173	NM_009609	ENSMUSG00000062825	Actg1	AL023024|Actg|Actl|E51	actin, gamma, cytoplasmic 1	protein-coding	7.54664816389108	7.9660622123572	7.01861064562361	6.89253930188031	7.95137583461008	8.0205347812338	7.38822878308626	7.53369938948776	0.427668201249565	0.121737416446001	0.386491862855037
Merged-chr7-19302691-4	chr7	19302579	19302779	+	923.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008036)	TTS (NM_008036)	7366.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	4.70602936963688	4.86786687723214	3.91122766671633	3.05166254697915	4.97908580380889	5.10440027887088	3.69498260428064	4.43039657324642	0.603610073488648	0.5786323532895	0.814850274099854
Merged-chr5-96998305-6	chr5	96998140	96998340	+	985.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	551.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	4.41865893053432	4.67483637307484	4.89570024669796	4.69779446673024	4.47661601216847	4.89093166103669	4.61806359913028	4.98781916009307	0.14217817535541	0.697258653524942	0.877685183651429
Merged-chr17-7399162-3	chr17	7399067	7399267	+	989.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS_Mus|LTR|ERV1	-13862.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	3.3278420733078	3.43187810500166	3.76423153141655	2.81579884933609	4.82077003982243	5.09770440337223	4.42761348702073	4.44769850466852	4.03749865941093	4.72004750053619e-13	5.40141898779205e-11
Merged-chr11-106789946-3	chr11	106789859	106790059	+	918.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355677)	promoter-TSS (NM_001355677)	707.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	3.80444823452899	3.70981086420876	4.24671314439348	3.83438578256312	3.97332641443911	3.75437884889089	3.78966516004911	3.90423234528388	-0.128588493513019	0.780345362552472	0.914468274591605
Merged-chr11-117066886-3	chr11	117066794	117066994	+	928.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9889.0	NR_027059	76972.0	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	3.90783305503266	4.20043991197347	3.86036271489678	3.76611583667789	3.78229074867286	3.64437618438592	3.45160787576489	3.8580670682695	-0.714775726041553	0.140233581249668	0.416336910539243
Merged-chr9-66350407-4	chr9	66350321	66350521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145617)	promoter-TSS (NM_145617)	-29.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	5.5343980077188	5.34726505348627	4.75199790056877	4.91804044282638	5.84045456334853	5.78717320438168	5.6804974033574	5.77367673419149	1.05820041552805	0.000638552308856493	0.00938305425105208
Merged-chr19-55792094-4	chr19	55792012	55792212	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	50302.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	5.07923093133478	5.11682508171171	5.2461527079895	5.38715399903085	5.40613407770172	5.2567654673479	5.70136605817724	4.92668968893329	0.239168179513047	0.459304751594049	0.741906524615641
Merged-chr10-20785357-3	chr10	20785260	20785460	+	795.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60282.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	3.55564552518675	3.66405084716926	3.81698702909484	3.81503304632763	3.49556040661	3.55058365505373	3.48451905313547	4.0303689807266	-0.192863748825817	0.700708936592655	0.879330200638978
Merged-chr2-148492395-4	chr2	148492268	148492468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48833.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	7.555243533982	7.13363079080968	7.5982311151872	7.81187184846134	7.12784163870892	6.62621146684237	7.21421219666346	7.08389420387971	-0.697597130053874	0.00232441461431367	0.0262493269605319
Merged-chr18-4347798-3	chr18	4347663	4347863	+	750.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	5190.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	2.73951976893107	2.6641364964657	2.80544894145443	2.72801242992458	2.88341447165258	2.97566198752018	2.85785481021909	3.08859524531383	0.999402762801066	0.098546757897434	0.34406532007561
Merged-chr18-68219157-2	chr18	68219060	68219260	+	759.166626	f0_balb.idr|f0_c57.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-8786.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	4.22381134463605	4.19725276987575	4.26717597330849	4.34142998758001	3.98725104408581	3.81547703077764	4.20558038987193	4.17768977647711	-0.536909416973419	0.194132976524751	0.494566611884583
Merged-chr4-133011470-4	chr4	133011351	133011551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146155)	promoter-TSS (NM_146155)	-55.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	5.8526284676925	6.25126012645172	5.77624137274498	5.83179877114886	6.29297430428425	6.2370148956806	6.18890845008707	6.3908208387093	0.524690553731695	0.0316546964147258	0.173484354066276
Merged-chr19-41442623-6	chr19	41442528	41442728	+	998.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57558.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	5.04002162841454	4.95668826576421	4.90239898270952	5.28691032037462	4.99154372469574	5.03973630316439	4.80453383200985	4.82393390331315	-0.298011005197762	0.361482501871201	0.666752086050537
Merged-chr18-12741793-3	chr18	12741702	12741902	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042419, intron 1 of 5)	intron (NM_001042419, intron 1 of 5)	447.0	NM_027687	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	4.85054608760208	4.83704064670968	4.59294833840269	4.96203686210181	5.40250308167544	4.86567094484263	5.54749195041309	5.18928056514704	0.860529365829783	0.010957469298339	0.0842542624161684
Merged-chr2-105399237-11	chr2	105399267	105399467	+	925.8485109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009037)	promoter-TSS (NM_009037)	-48.0	NM_009037	19672.0	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	4.56195608393694	4.55322528577002	5.11429134063222	4.92090684111504	4.48269875659806	4.73856053353799	4.62473392177526	4.75907018825612	-0.348844571175929	0.339948759854768	0.648997231458602
Merged-chr17-86677087-3	chr17	86676987	86677187	+	950.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76777.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	3.92646497282999	3.92713025502094	4.10293157606805	4.22036033358505	3.59437082318742	3.84243127029473	3.46998965682596	3.60566547792443	-1.27498862325814	0.00734891660763567	0.0630759116381164
Merged-chr10-40317008-4	chr10	40316918	40317118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	-14830.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	5.6522889492172	5.74346129808765	5.90127612697746	5.79836706547875	6.07381245756238	6.31875676480253	5.6780350142868	5.70285914645204	0.312311905145125	0.251449987808843	0.56287087730158
Merged-chr11-6033329-2	chr11	6033229	6033429	+	875.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001174054, intron 1 of 20)	intron (NM_001174054, intron 1 of 20)	32419.0	NM_001174054	12323.0	Mm.439733	NM_007595	ENSMUSG00000057897	Camk2b	CaMKII	calcium/calmodulin-dependent protein kinase II, beta	protein-coding	2.87443529562536	2.77984599673002	2.8747928454314	2.65489616109631	3.03945443108614	2.98317950320422	2.66848232480801	2.93336339462365	0.56751950441409	0.362120454225975	0.667358097800552
Merged-chr5-64371780-4	chr5	64371698	64371898	+	920.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96144.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	4.66645532506431	4.3563195480889	4.58876633271373	5.0458157924748	4.45536116219205	4.63664632222268	4.48490368290564	4.70157121234386	-0.304552876709511	0.431388878001107	0.721675024613162
Merged-chr2-59462270-4	chr2	59462152	59462352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B2|LTR|ERVL	-22401.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	5.79960482123019	5.97384141831517	5.65461334235508	5.94279087542297	5.47225594748076	5.33851326191775	5.57373044451076	5.5979874921232	-0.601331614104858	0.0234470891256744	0.142146355240302
Merged-chr11-77216170-4	chr11	77216082	77216282	+	891.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177710)	promoter-TSS (NM_177710)	-243.0	NM_177710	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	4.11910984292628	4.30981830426003	4.01524362522736	4.191826559184	4.63374279599282	4.19330499578686	4.37034817129838	4.42770335703006	0.619695441492232	0.116910338024417	0.378293562110905
Merged-chr17-35837054-4	chr17	35836879	35837079	+	976.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011655, intron 1 of 3)	intron (NM_011655, intron 1 of 3)	1322.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	4.32166421279277	3.82928673254855	4.59714899136822	4.12451682463014	4.35766191058837	4.40624346750927	4.34542702029116	4.48364086668106	0.38467849894042	0.357502867051018	0.663619560848277
Merged-chr11-61861917-4	chr11	61861818	61862018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6826.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	6.12970073523992	5.97643963963035	5.80686149551298	6.17802009931104	5.81296356868817	5.82744458253573	5.75274032727223	5.85102316318935	-0.369469009367971	0.13620064406387	0.410658011622976
Merged-chr12-85348524-4	chr12	85348427	85348627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-9165.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	7.47642321401893	7.37788764955695	7.37504381271299	7.4624910992134	7.26452529532002	7.2328539825066	6.91554618773106	6.78611225509079	-0.478093383359865	0.01607912739522	0.11002655343822
Merged-chr1-106232628-3	chr1	106232526	106232726	+	949.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	60757.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	4.29859153967031	4.11957994064844	5.30887553321936	5.08038406143943	3.94082119746353	4.0423336877864	4.4153043485554	4.19695656688523	-1.45789393230588	0.00290689785179583	0.0312081571935106
Merged-chr11-69059630-4	chr11	69059522	69059722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028005)	promoter-TSS (NM_028005)	-153.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	8.03033875009002	8.22831154620379	7.63314909488944	7.50522446801239	8.06914238230994	8.37501068278662	7.95332972748212	7.88033390597526	0.263529865687472	0.231885856968741	0.541480329807035
Merged-chr16-10495155-4	chr16	10495047	10495247	+	911.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302619, intron 2 of 19)	RLTR35B_MM|LTR|ERVL	5366.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	3.7503621253683	3.8258263917541	3.58157975344405	3.71877584926476	4.17096338965101	3.75858911171445	4.0572210662068	3.51831485126435	0.538106093712834	0.265492606697303	0.577154640086122
Merged-chr11-105125800-2	chr11	105125700	105125900	+	860.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172567)	promoter-TSS (NM_172567)	-625.0	NM_172567	52686.0	Mm.270091	NM_172567	ENSMUSG00000020691	Mettl2	2810438F06Rik|AW493404|C130031G21Rik|D11Ertd768e|METL|PSENIP1	methyltransferase like 2	protein-coding	3.150635893038	3.6180086066479	3.01684170569555	3.15470003800636	3.56012878357958	3.32532539894304	3.2606883622871	3.21176950605909	0.339506066177439	0.557159155888183	0.80240432900949
Merged-chr2-32084716-4	chr2	32084547	32084747	+	918.3988039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175511)	promoter-TSS (NM_175511)	22.0	NR_151493	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	3.93969516708602	3.91028337255295	3.89089723110957	3.84826571629371	4.02622886737737	3.84902028426059	3.97062927719467	3.98538677393383	0.195583201029653	0.64405132179493	0.850082962136934
Merged-chr12-119483463-4	chr12	119483355	119483555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	40045.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	5.44721312376712	5.11048064896261	5.61433228842484	5.33180822484935	6.07891031816996	5.70943459813935	5.50604895877141	5.80239661811337	0.713047424830452	0.0140665925379231	0.100335303162324
Merged-chr11-8610072-4	chr11	8609955	8610155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	54480.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	8.2275529781668	8.40154755595442	8.25179125981425	7.81585167288312	8.20038365722677	8.27893009202984	8.14309006021872	7.88748945889395	-0.0621879268259887	0.747246821758651	0.900488970405293
Merged-chr3-117995581-4	chr3	117995489	117995689	+	961.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126653.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	4.62628615441258	5.71749962802318	5.49593765132447	4.81191537754244	5.72339307590011	5.94987863248497	5.10659505188396	5.01897494851621	0.471465674192642	0.261201150154835	0.57310306916775
Merged-chr2-66144963-4	chr2	66144881	66145081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20188.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	6.22739043041021	6.32632250610315	6.24787303270276	6.74896130901284	6.31005320191405	5.79635972933021	6.37719066132852	6.22403536826236	-0.333363070975229	0.205378921913355	0.508935603776308
Merged-chr6-125685618-4	chr6	125685527	125685727	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 50 of 51)	intron (NM_011708, intron 50 of 51)	-4792.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	5.14611679501877	5.50756711426657	5.11215908494619	5.69066600052453	5.54347310078778	5.06244286079617	5.28190953112342	5.30450175252423	-0.157643288175133	0.626219407112238	0.840349205482018
Merged-chr8-11411904-3	chr8	11411825	11412025	+	733.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 16 of 47)	intron (NM_009932, intron 16 of 47)	-66004.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	3.32700182148028	3.36694907562957	3.47575994868953	3.23768808862802	2.59969479714897	2.85325787919777	3.02429879826452	3.2162945202233	-1.75330655754573	0.0107373964545923	0.0831911551367611
Merged-chr13-98693020-7	chr13	98692833	98693033	+	928.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025606, intron 1 of 3)	intron (NM_001025606, intron 1 of 3)	1898.0	NM_001025606	380863.0	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	3.58971676477291	3.950314159016	3.22272087561286	3.4082047929711	3.72981238932302	3.76111987087336	3.406767395965	3.4767681533473	0.10785504943819	0.842974124843856	0.940323698985438
Merged-chr15-36609142-4	chr15	36609057	36609257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008774)	promoter-TSS (NM_008774)	-184.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	9.11035454961721	9.29770090315325	9.18017191506276	9.00535901249449	9.39771363778879	9.42622547211379	9.45200185496859	9.26030821504176	0.291073385790608	0.0443928073360788	0.214846418732334
Merged-chr15-67146874-4	chr15	67146756	67146956	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 2 of 8)	intron (NM_009177, intron 2 of 8)	30026.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	4.26096145062406	4.96477809243193	4.73746407914878	4.88156223994554	4.22594159339091	4.22410112807528	4.64086522322754	4.93420689384771	-0.442217276715764	0.297022012238252	0.609078672729295
Merged-chr9-32118079-3	chr9	32117981	32118181	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195632, intron 1 of 21)	intron (NM_001195632, intron 1 of 21)	1945.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	3.8468341477057	3.85488726301105	4.28110353381349	4.57213111912761	4.03858457429866	4.27763019622171	4.08819382276597	3.90114863955796	-0.284635465349223	0.546899342483849	0.796638012378211
Merged-chr11-9317512-4	chr11	9317358	9317558	+	791.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 23 of 61)	intron (NM_178259, intron 23 of 61)	125516.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	4.1264572315322	4.00205816155596	3.74622674474518	3.85894544710826	4.50718966212076	4.25339675232859	4.50666147257375	4.12455514823058	1.08574756457524	0.0088351378143971	0.0721602150878911
Merged-chr5-121996935-4	chr5	121996854	121997054	+	939.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007804, intron 2 of 22)	L1MC4a|LINE|L1	50871.0	NM_007804	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	5.32824369576778	5.51227085161456	5.35677369858567	5.262623819518	4.64361379007311	4.91773846688057	4.75727893320748	5.26838344042122	-0.868522618145742	0.00834955965024389	0.0691947032651892
Merged-chr12-119238605-5	chr12	119238534	119238734	+	942.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177290)	promoter-TSS (NM_177290)	-358.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	3.97478078711313	3.91674737596781	4.29872114245998	4.02610074535537	4.30016253231913	4.29561757213624	4.15158387084582	4.12150741044369	0.421706970421461	0.300492219350218	0.612471670612485
Merged-chr5-124015974-4	chr5	124015890	124016090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	16270.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	6.90363479308152	6.92788249749887	6.73770161339498	6.83995195047263	6.93752329025674	6.83806619935066	7.00511916708317	6.59127656299945	0.00272570364464418	0.989288032249991	0.995680733682901
Merged-chr4-101717779-4	chr4	101717654	101717854	+	893.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001122899, exon 1 of 19)	5' UTR (NM_001122899, exon 1 of 19)	347.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	4.41156477115933	3.75027176640256	4.86422037830339	4.29718566798203	4.08010254435483	3.82906926836743	4.13575897341006	4.10309917470075	-0.847664845894171	0.0814692382504351	0.309637916992083
Merged-chr18-9489679-6	chr18	9489681	9489881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39627.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	6.62550978482805	6.4277509308421	7.03071924256795	6.76837516685072	6.80911831529284	6.38750799432465	6.37567475411646	6.68249321170513	-0.208965101052658	0.383901914058911	0.685555904565125
Merged-chr5-125390761-2	chr5	125390661	125390861	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019639)	promoter-TSS (NM_019639)	-744.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	3.66864990277207	3.60158424825792	3.40499977344688	3.23438050522356	3.35750146151776	3.3299516744681	3.33304691102196	3.80223698448418	-0.0339768499652542	0.949935962438624	0.982126657618726
Merged-chr6-85451401-4	chr6	85451306	85451506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163427)	promoter-TSS (NM_001163427)	-99.0	NM_007638	12468.0	Mm.289900	NM_007638	ENSMUSG00000030007	Cct7	AA408524|AL022769|Ccth|Cctz	chaperonin containing Tcp1, subunit 7 (eta)	protein-coding	8.97984317469259	8.93733892267657	9.05335031963095	8.97353047355601	8.9491343305223	8.87419621184714	8.82669996356539	8.60356221535595	-0.203458647769227	0.17301373212461	0.46686422165811
Merged-chr2-48766755-4	chr2	48766668	48766868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47341.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	7.18929635242669	7.44391173150625	7.7658200986	7.62704402927161	7.45720259269651	7.56683569079482	7.697501079391	7.69858433079986	0.102089397476539	0.601652965395761	0.827140308199285
Merged-chr15-78326619-3	chr15	78326519	78326719	+	958.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	629.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	3.6017459802386	4.36354156958312	3.92812319908769	3.3276553051445	4.04131175843529	4.05248573084224	3.64822620092571	3.71786568248989	0.0327124407306207	0.95245925958086	0.983110341498473
Merged-chr5-90339783-4	chr5	90339690	90339890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198010, intron 1 of 32)	intron (NM_198010, intron 1 of 32)	26395.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	6.01643768569354	5.63278971389811	6.03824498424676	6.2807521579611	5.74929966312162	5.77849554756491	6.34209055324356	5.62723324413633	-0.187412307810963	0.528465145332628	0.785098108608097
Merged-chr19-61227254-4	chr19	61227143	61227343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009970, intron 2 of 11)	CpG-7695	1175.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	8.09174538254806	8.31464077936738	8.12633077620454	8.1285895961016	8.70981088563399	8.56407117399158	8.85183017058889	8.72334141224322	0.692731998588481	8.23244229148908e-06	0.000231519956485935
Merged-chr15-97849639-7	chr15	97849544	97849744	+	936.357117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5142.0	NM_001204278	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	4.23012012937935	4.23728421836616	4.09334826081195	4.04984544176126	4.11899341979956	4.31179821687124	4.21187356441112	4.04187252387308	0.0601773141122302	0.880726451598092	0.95522161554859
Merged-chr3-89266570-4	chr3	89266458	89266658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026767)	promoter-TSS (NM_026767)	97.0	NM_026767	68563.0	Mm.272927	NM_026767	ENSMUSG00000042737	Dpm3	1110001H19Rik|AV117483	dolichyl-phosphate mannosyltransferase polypeptide 3	protein-coding	5.41942712970077	5.42918250848887	5.10063733816604	5.13997864621352	5.38920165533825	5.56563818838396	5.52624390421725	5.49858990463817	0.390060807622143	0.170369705384879	0.463556181168789
Merged-chr4-151995186-7	chr4	151995101	151995301	+	884.3095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172705, intron 1 of 3)	CpG	978.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	3.37281152686463	3.64709065881984	4.07053458492363	3.50160424543647	4.00737215696694	3.9663249320114	3.72583366620645	3.9822401326525	0.751979449963918	0.127280185629795	0.396936397342411
Merged-chr4-132843228-4	chr4	132843142	132843342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146154)	promoter-TSS (NM_146154)	-73.0	NM_146154	100336.0	Mm.105230	NM_146154	ENSMUSG00000028882	Ppp1r8	6330548N22Rik|AU044684|NIPP1	protein phosphatase 1, regulatory (inhibitor) subunit 8	protein-coding	5.7407938626362	6.01524018038714	5.378055240819	5.39096806718726	5.67626317894144	5.84171080087106	5.84984778221782	5.68813345229981	0.186358508275694	0.518178626036014	0.779362628036693
Merged-chr1-33873772-4	chr1	33873663	33873863	+	983.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 3 of 6)	intron (NM_177235, intron 3 of 6)	33858.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	4.87320640395372	4.48889533369833	4.90755945132005	4.63398593065197	4.48731826827227	4.82604168251884	4.78110797769815	4.83630340448794	0.00958868078094539	0.978476477811038	0.992419060033797
Merged-chr13-112137049-4	chr13	112136953	112137153	+	912.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-151398.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	4.35077135062022	4.32364284808843	3.7150752981249	3.8065071691329	4.14803011657101	4.26809153107005	4.12359299857134	3.99522469557198	0.163487060645882	0.719795388871614	0.888028373825666
Merged-chr10-117224398-4	chr10	117224307	117224507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026570)	promoter-TSS (NM_026570)	100.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	6.62995680030943	7.04803493563082	7.2584807194863	6.62482454326552	6.67510834023967	7.20800725980023	6.73524092659993	6.67427363803976	-0.103632035129719	0.678077057454245	0.867974866493993
Merged-chr4-135874643-3	chr4	135874561	135874761	+	882.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026383)	promoter-TSS (NM_026383)	-815.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	3.38134116171795	3.15872585927834	3.57854838263594	3.31522230632805	3.29594402311825	3.25983994408762	3.07418501152903	3.20960727413136	-0.543508666130422	0.324981564492019	0.636488090877592
Merged-chr7-19500493-5	chr7	19500392	19500592	+	987.8444210000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7839.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	4.10602951933901	3.75208899493991	4.33792108700199	4.20334429885448	4.5070561640542	4.50895230520418	4.275478360904	4.41699920741464	0.752529783667379	0.0674171283001862	0.27709226095848
Merged-chr12-91779164-4	chr12	91779052	91779252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	CpG	7284.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	7.24578904282555	7.2393618452127	6.92870203454577	7.05668891288057	7.32437501461955	7.41311867405844	7.52366991098651	7.31543718858746	0.369115332007016	0.0476127625572638	0.225050058175409
Merged-chr3-60616333-4	chr3	60616236	60616436	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 6 of 7)	intron (NM_001253711, intron 6 of 7)	115157.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	5.20562695040432	5.6960648694719	5.13778445456475	5.27063649077313	5.44353587066784	5.50844942555674	5.27696339897996	5.55162507344079	0.176660363162474	0.555008361209639	0.801191516655959
Merged-chr16-32703526-4	chr16	32703437	32703637	+	883.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30383.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	4.42884284766934	4.0177758518077	4.53272247722993	4.39643029480029	3.91250452188181	3.94864858006909	3.87254434689039	4.18407697656332	-0.987671448598754	0.0223423888881433	0.137832284509374
Merged-chr4-82876891-1	chr4	82876791	82876991	+	658.0	f0_balb.idr	Intergenic	Intergenic	8260.0	NM_009887	12622.0	Mm.6780	NM_009887	ENSMUSG00000038192	Cer1	Cerl|Cerl1|Cerr1|cer-1	cerberus 1, DAN family BMP antagonist	protein-coding	3.01120787275692	2.74006004417858	3.25928606710547	3.12506392187955	2.5067889831508	2.74029039978572	2.4738759791117	2.5571635948237	-2.59358904009837	0.000898849503064601	0.0123750887386142
Merged-chr17-32165053-4	chr17	32164966	32165166	+	816.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008716, intron 1 of 32)	intron (NM_008716, intron 1 of 32)	1786.0	NM_008716	18131.0	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	3.60342778654999	3.32075151731164	3.65607796527545	3.62133736792226	3.78871850490851	3.48607329685414	3.29609914129695	3.927816307199	0.295080772256387	0.574609822880164	0.81246206040379
Merged-chr7-43351368-3	chr7	43351271	43351471	+	897.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271019)	promoter-TSS (NM_001271019)	30.0	NM_145581	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	3.82109041196993	3.95544468049511	3.71617470354837	3.81499501348754	3.68135155790284	3.94170394155933	3.75486908459178	3.91673735495707	-0.0254599348116023	0.954679279051052	0.983838959554429
Merged-chr11-96967761-4	chr11	96967668	96967868	+	972.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	9920.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	5.09916161114524	4.74698131572026	4.69902429151216	4.99706049868905	4.91952273853024	5.10674823713325	5.16460309884629	5.03245159144092	0.293935152093469	0.364279513187205	0.669205891424975
Merged-chr3-88151011-3	chr3	88150937	88151137	+	867.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	8665.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	3.84990386682358	3.79079817898758	3.74498949879816	3.88610429380299	3.7644362889544	3.86422935148156	4.1434119492411	3.89781338073144	0.273399573629122	0.537370982502129	0.791031334812405
Merged-chr4-154899159-4	chr4	154899035	154899235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025582)	promoter-TSS (NM_025582)	-92.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	8.04598010869231	7.84820630536852	7.89801672227591	7.87365553219241	7.73543541692321	7.99356085752527	8.03411426143989	7.672651411402	-0.0666849604991871	0.701717332163575	0.879838256549721
Merged-chr3-84686936-4	chr3	84686819	84687019	+	855.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177260, intron 3 of 6)	intron (NM_177260, intron 3 of 6)	20727.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	4.38670282590295	4.40361118392652	3.95605112230397	4.68071426778769	4.02913012954177	4.18981513615029	4.14779170836653	4.42459278857579	-0.478204721204282	0.268862222240989	0.580429593184657
Merged-chr4-133854931-3	chr4	133854815	133855015	+	890.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009097, intron 17 of 21)	intron (NM_009097, intron 17 of 21)	19816.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	3.3672484985512	3.67148291934336	3.47117288242159	3.51136988899405	2.92890262053406	3.17713568490039	2.98790457158792	2.99526266260088	-2.01974692722278	0.000804784481541988	0.0113007998839371
Merged-chr9-89224794-4	chr9	89224678	89224878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359993, intron 2 of 2)	(TTTG)n|Simple_repeat|Simple_repeat	13394.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	7.84664838223056	7.89466961188537	7.60491964144011	7.33122803915263	7.62109154822355	7.34151703167483	7.55892231590381	7.52849547307135	-0.210308897970209	0.297726330337088	0.60997819547129
Merged-chr19-37523882-3	chr19	37523776	37523976	+	912.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26542.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	4.46254647813018	4.43789446927165	4.53994919068095	4.86835588798036	4.35105719358374	4.05732394301669	3.9755381890271	3.98886460963879	-1.17485286299072	0.00555035602291457	0.0513123315915095
Merged-chr7-16016149-2	chr7	16016049	16016249	+	953.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER91B|DNA|hAT-Tip100	-16654.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	3.24197462132501	3.32209634477634	3.24245912935848	2.83553279404576	2.98860040826083	2.92409402096658	2.94244907725704	2.7410633248251	-1.11708285220118	0.0822500496042251	0.311342069813824
Merged-chr16-20498851-4	chr16	20498744	20498944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172265)	promoter-TSS (NM_172265)	27.0	NM_172265	224045.0	Mm.233855	NM_172265	ENSMUSG00000003235	Eif2b5	C81315	eukaryotic translation initiation factor 2B, subunit 5 epsilon	protein-coding	6.55092009687466	6.31243899327673	6.03107731049054	6.37626701557392	6.2888854190624	6.45689427317942	6.30415360858537	6.25757833230867	-0.0119571030368814	0.958639286918694	0.985248919859626
Merged-chr1-87149496-4	chr1	87149392	87149592	+	772.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021306, intron 14 of 17)	intron (NM_021306, intron 14 of 17)	6644.0	NM_001277925	13599.0	Mm.140765	NM_021306	ENSMUSG00000026247	Ecel1	DINE|xce	endothelin converting enzyme-like 1	protein-coding	3.5171302855808	3.86150828301485	4.07298127803214	4.25199754658026	3.69025556734951	3.69624018644474	3.56620637106041	3.69212594703384	-0.894873064018727	0.0741267408549727	0.293305202474629
Merged-chr5-63969000-4	chr5	63968902	63969102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145923)	promoter-TSS (NM_145923)	-105.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	8.52890052068896	8.70764518044246	8.7312075100669	8.74341989683104	8.86726110846794	8.83970717218001	8.87521793348817	8.55415111595802	0.136355694729841	0.381672850533235	0.683861748681093
Merged-chr7-24300258-2	chr7	24300158	24300358	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009561)	promoter-TSS (NM_009561)	-709.0	NM_009561	22719.0	Mm.12832	NM_009561	ENSMUSG00000050605	Zfp61	-	zinc finger protein 61	protein-coding	3.48972115159347	3.30850724796987	3.38253353221504	3.13361707130344	3.37630803841806	3.02729384892629	3.70735441594421	3.43554788646114	0.285769414525227	0.612207671024313	0.832680684364583
Merged-chr19-53107086-4	chr19	53107002	53107202	+	797.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30850.0	NR_045320	78457.0	Mm.76932	NR_045320	ENSMUSG00000099988	1700054A03Rik	-	RIKEN cDNA 1700054A03 gene	ncRNA	3.6680060092857	4.01980563121649	3.98588448505485	3.91778048667383	3.87943885490042	3.90298799717474	3.82138427787716	4.19819113412782	0.137319533117917	0.757583568226117	0.904796147568153
Merged-chr2-127453962-4	chr2	127453844	127454044	+	824.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9379.0	NM_029629	68126.0	Mm.288676	NM_029629	ENSMUSG00000027371	Fahd2a	1500003K14Rik|B430104H02Rik|Cgi-105|Fahd2	fumarylacetoacetate hydrolase domain containing 2A	protein-coding	3.88133466900753	4.10306822304929	3.88188884655749	3.69842112056486	3.74692861920136	4.60699010689408	4.01638970872192	4.03174160754479	0.632965724604164	0.183245554863333	0.480113201664416
Merged-chr10-26791994-4	chr10	26791895	26792095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	19483.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	5.46986771076389	5.69157432932019	5.83719174729752	5.9613784590505	5.66864927229508	4.76396908183632	5.38574083978218	5.1828746560937	-0.777053882628343	0.0206716392409538	0.130918090263604
Merged-chr9-20581411-4	chr9	20581287	20581487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172919)	promoter-TSS (NM_172919)	59.0	NM_172919	244721.0	Mm.86627	NM_172919	ENSMUSG00000058192	Zfp846	2210010B09Rik|9130221F13|Znf846	zinc finger protein 846	protein-coding	7.69154867611344	7.63874763263134	7.90651714416723	7.89585362292966	7.74590932688402	7.68205487001754	7.92313097332293	7.71231168585162	-0.0304067115977295	0.860373251357505	0.947136163196139
Merged-chr15-80710732-4	chr15	80710637	80710837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144812)	promoter-TSS (NM_144812)	-576.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	7.3272700532291	7.25922538171111	6.73625720639456	7.03691352181914	7.348581509517	7.45402300990689	7.40668287286134	7.11643853707556	0.310553119943551	0.137034962580187	0.411631144560059
Merged-chr8-123361470-4	chr8	123361360	123361560	+	886.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172287, intron 10 of 14)	intron (NM_172287, intron 10 of 14)	-12251.0	NM_001359076	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	4.1089654772724	4.20729811888858	4.19954401918972	4.04752570656797	4.13737306215483	3.91515934654888	4.09185726158453	4.19692044600688	-0.111743898181187	0.784236602698896	0.915972189024067
Merged-chr7-115124961-3	chr7	115124870	115125070	+	900.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	173696.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	3.77428929456746	3.33043875767735	3.91478197666935	3.8885691135336	3.4663548874582	3.55537015252304	3.54736298407355	3.9974243612887	-0.280274285953336	0.594945074045524	0.823658836610386
Merged-chr9-49050191-3	chr9	49050081	49050281	+	779.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-5400.0	NM_012039	26951.0	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	2.88778224807414	2.98651273289949	3.24465129281585	3.14962759570305	2.57700011401869	2.72464088822941	2.54541964153252	2.82516043435808	-2.16284355376715	0.00271974873110155	0.0295799336921426
Merged-chr2-178416665-4	chr2	178416568	178416768	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081289, exon 2 of 4)	5' UTR (NM_001081289, exon 2 of 4)	2134.0	NM_001081289	71532.0	Mm.40216	NM_001081289	ENSMUSG00000070476	Fam217b	9030418K01Rik|AI851938	family with sequence similarity 217, member B	protein-coding	5.6329974751765	5.87104152465404	6.20090416740774	6.44155865516199	5.6176515453309	5.40004858736217	5.85292150589604	5.48470864346474	-0.78901092745681	0.00890311275819007	0.0725904539536324
Merged-chr5-121451384-4	chr5	121451263	121451463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026129, intron 1 of 2)	intron (NM_026129, intron 1 of 2)	1111.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	6.67799458101104	6.45782729271725	6.4197432407995	6.26460414549469	6.58745390326468	6.74820736867474	6.56997443528921	6.81282269064611	0.334533612161167	0.125593258361215	0.393520382836331
Merged-chr9-37255682-4	chr9	37255587	37255787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020258)	promoter-TSS (NM_020258)	51.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	6.7893180052013	7.15255801620428	6.95224324143261	6.97047724313771	6.97899352398926	6.95287278962506	6.60393361188366	6.61669534929799	-0.236585507584722	0.266330024637797	0.578066256744946
Merged-chr16-7420066-6	chr16	7419947	7420147	+	870.9722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	350212.0	NM_183188	268859.0	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	3.87244521124928	3.515528696522	3.92607448567099	3.68346729789977	3.85731234893536	4.33463406286017	4.14388904666829	4.53207960882007	1.28855325030219	0.00534182488077366	0.0499180455807521
Merged-chr6-126910498-1	chr6	126910398	126910598	+	597.5	f0_balb.idr	intron (NM_207210, intron 2 of 14)	intron (NM_207210, intron 2 of 14)	11341.0	NM_207210	101320.0	Mm.44896	NM_207210	ENSMUSG00000030345	Dyrk4	AW049118|Dyrk4a|Dyrk4b	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4	protein-coding	3.29711529136855	3.12490458991103	3.49634926870975	3.25265599166675	2.86570427570317	3.10593782147367	2.98659812484133	3.24078434707173	-0.978142809448355	0.0976551955273839	0.342493259956485
Merged-chr5-66140172-4	chr5	66140097	66140297	+	982.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	10781.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.31909222075582	4.91402571250538	5.17939506286636	5.13117203657563	4.76714692518144	4.93722698211697	4.92775726125013	4.87490437103076	-0.525115859915432	0.0992900199551842	0.345643093382406
Merged-chr1-85572389-3	chr1	85572290	85572490	+	605.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	26420.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	3.53592144340704	3.78507370132738	3.63588623813539	3.19921880205594	3.26017980542267	3.29523485200484	3.46941492835798	3.18067895909916	-0.855796719961657	0.126252945699404	0.394853444200069
Merged-chr2-160362848-1	chr2	160362748	160362948	+	748.0	f0_balb.idr	TTS (NM_010658)	TTS (NM_010658)	4217.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	3.16215735196264	3.11132233493695	3.5769705511945	3.2227846928551	3.12489648226722	3.21074945284249	3.32063788852183	3.03283339796802	-0.385247892542864	0.498330789395438	0.76759838054097
Merged-chr2-181364905-1	chr2	181364805	181365005	+	570.0	f0_c57.idr	promoter-TSS (NM_144894)	promoter-TSS (NM_144894)	-26.0	NM_144894	229007.0	Mm.87720	NM_144894	ENSMUSG00000027582	Zgpat	1500006I01Rik|BC021513	zinc finger, CCCH-type with G patch domain	protein-coding	3.27455641325	3.55465511429357	3.88972366153074	3.3125894587178	3.8527973764274	3.52662121652434	3.78061424640489	3.97309001940908	0.834437715644174	0.107329998204621	0.361382260156614
Merged-chr18-56975349-4	chr18	56975250	56975450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029909)	promoter-TSS (NM_029909)	29.0	NM_029909	77422.0	Mm.256874	NM_029909	ENSMUSG00000024592	C330018D20Rik	AU018666	RIKEN cDNA C330018D20 gene	protein-coding	6.38512649983953	6.30065162201211	6.36833758341635	6.57878703546002	6.33392861679064	6.35094323302127	6.59435789516004	6.39934458039177	-0.00531185670801409	0.980862044084035	0.99298505811204
Merged-chr17-74523581-4	chr17	74523439	74523639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4756.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	6.37763917156008	6.62244762824839	6.79047668677432	6.36217977355434	6.30018443754244	6.44255897004587	6.38154572449103	6.28061387777374	-0.2817763945696	0.214806608293207	0.520802492393971
Merged-chr15-99341242-4	chr15	99341143	99341343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310622, intron 1 of 25)	MTD|LTR|ERVL-MaLR	29239.0	NM_001310623	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	5.88402250756276	6.11792696916508	5.50695839184285	5.59710985391421	5.60730291978338	5.71267601086391	5.66865805809404	5.58820694254645	-0.249904228524571	0.372498669367698	0.676285177888533
Merged-chr11-20204513-4	chr11	20204418	20204618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	B1F|SINE|Alu	3106.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	5.94699096795829	6.49932080869449	6.76769571625292	6.91728063621959	6.82767539621144	6.73588070453684	6.37199151743466	6.55481059903496	0.0604233041385677	0.825100717107432	0.932930809630366
Merged-chr18-56459156-6	chr18	56459019	56459219	+	827.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	26987.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	3.98726713533251	3.81557872517711	3.81140151819072	3.64880243540024	3.58127042546091	3.33651895558296	3.35208220348521	3.80906781452093	-0.869601330086066	0.090567353962664	0.328704618172112
Merged-chr8-105477185-3	chr8	105477087	105477287	+	800.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175160, intron 6 of 13)	intron (NM_175160, intron 6 of 13)	-5765.0	NM_026481	67971.0	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	3.57669478436995	3.14583936430188	3.31297903851432	3.20650782652162	3.17301974895512	3.42725404783752	3.41133077150931	3.47595639185636	0.210029897901628	0.696990584178282	0.877559881683723
Merged-chr14-63410689-4	chr14	63410592	63410792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	6495.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	5.40041927808349	5.23056438245207	6.11161545749755	6.09895633258285	5.30743791609079	4.9019544095179	5.37419965283212	5.3365542766382	-0.92086146068468	0.00862781529073257	0.0709144647319924
Merged-chr8-108765001-4	chr8	108764904	108765104	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	50360.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	5.68835100460088	5.92119927896303	5.6893458942114	5.80720586491233	5.649807409382	5.73226158684689	5.80274071330229	5.23632983131927	-0.267062817009648	0.330066097110279	0.641433224839941
Merged-chr14-121873347-4	chr14	121873249	121873449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4921.0	NR_131002	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	6.72622743053082	6.00380237423292	6.30357266266681	6.4588986567163	5.82667293942385	6.44218224687039	6.56766818771867	6.33584072743265	-0.127404896088288	0.647218907819694	0.851605116430591
Merged-chr11-68483373-4	chr11	68483276	68483476	+	901.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 5 of 18)	intron (NM_177320, intron 5 of 18)	-19643.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	4.95315139031851	4.52996084673054	4.09752191778138	4.32184129718413	4.05590088849299	4.37657405130588	4.36194621403893	3.98509761069608	-0.72904212359198	0.0996051812384332	0.346200968037306
Merged-chr19-17144356-4	chr19	17144254	17144454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	188236.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	6.3048154999064	5.34943170003909	6.12113336901371	6.18055223797175	5.36144288401206	5.5882031686819	5.38120088218897	5.30547809601484	-1.04542474655685	0.00085600743327148	0.0118748300707134
Merged-chr9-88692448-3	chr9	88692353	88692553	+	602.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359992, intron 2 of 2)	intron (NM_001359992, intron 2 of 2)	27134.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	3.07724979601622	3.25839677056608	3.24812298408359	3.10766239387649	3.01318171443988	2.91531898980844	3.00545481457045	3.24626767396945	-0.493411066050576	0.392549515257997	0.691992717483506
Merged-chr4-66894815-3	chr4	66894727	66894927	+	985.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67276.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	4.09688503421841	4.09340768703034	4.21722066289071	4.44093677613807	3.43701108149325	3.36156154759645	3.45069098164172	3.46068984100809	-2.57636368914305	1.13711508917316e-06	3.93479411435373e-05
Merged-chr1-136465371-2	chr1	136465271	136465471	+	903.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2477.0	NM_001287179	381293.0	Mm.458468	NM_001081258	ENSMUSG00000041498	Kif14	D1Ertd367e|E130203M01	kinesin family member 14	protein-coding	2.73003719069458	2.788893307466	2.73038128448259	2.42026077612232	2.81565016975623	2.63507191865554	2.59289114923565	2.66596748688271	0.0804136880752241	0.905430294023031	0.964885884722431
Merged-chr3-54102395-4	chr3	54102270	54102470	+	777.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-53687.0	NM_001253683	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	3.90256632998701	4.40902932558286	3.90307616479037	3.91814269362604	5.21670994095136	4.9054630752568	5.10457523705718	4.83189962802647	2.16593685438181	3.0549097695955e-08	1.4672430667344e-06
Merged-chr2-118804692-4	chr2	118804585	118804785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9318.0	NM_026412	51944.0	Mm.252695	NM_026412	ENSMUSG00000027331	Knstrn	1700025D04Rik|C15orf23|D2Ertd750e|SKAP|Traf4af1	kinetochore-localized astrin/SPAG5 binding	protein-coding	6.42340226849233	6.32646257391596	5.98364338753882	6.96953837469778	6.20035512223994	6.20908527018599	6.08853031382787	6.38566560006654	-0.407206200171705	0.14852613433132	0.430331001569952
Merged-chr11-83577598-2	chr11	83577498	83577698	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011338, intron 1 of 3)	MER74B|LTR|ERVL	1038.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	3.74582904241732	3.55927210982888	3.46528522256467	4.18266880007219	3.87085270366119	3.64207501451532	3.57176673898651	3.69274116227024	-0.249851910718811	0.636210275581837	0.846064411527807
Merged-chr10-24670812-3	chr10	24670709	24670909	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308329, intron 6 of 24)	intron (NM_001308329, intron 6 of 24)	41350.0	NM_001308327	18605.0	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	4.00124848087174	3.82641110780483	5.10734311236628	5.50445695238822	3.16732296326291	3.54524561618303	3.47710712726897	3.56243234891948	-3.91063425704544	1.49773576844473e-05	0.000395281180059797
Merged-chr13-112666828-4	chr13	112666699	112666899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 1 of 14)	intron (NM_178746, intron 1 of 14)	6033.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	7.06441161392746	6.599121059841	6.40894802922403	6.67988540935779	6.85771521402172	6.38606629168571	6.90193239748019	6.73243103073922	0.0459378662672366	0.847784658898191	0.942466137407908
Merged-chr17-69215897-4	chr17	69215823	69216023	+	907.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	56567.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	4.02446095957523	3.77759665176106	4.28802914319076	4.38534933417627	4.17075994559447	3.87618997478058	3.68183678307595	4.24509399369877	-0.339568650380841	0.476612744568433	0.753093932967774
Merged-chr5-121204680-6	chr5	121204631	121204831	+	923.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011290, intron 1 of 6)	CpG	230.0	NM_011290	19988.0	Mm.262021	NM_011290	ENSMUSG00000029614	Rpl6	Taxreb107	ribosomal protein L6	protein-coding	4.50896579371616	4.65085232386037	5.0512647192606	4.35572869257249	4.42071495138828	4.40927788868742	4.21028877922993	4.80621854161635	-0.395555322729901	0.33478499759264	0.645218356192842
Merged-chr13-58215690-4	chr13	58215589	58215789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152234)	promoter-TSS (NM_152234)	-36.0	NM_026842	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	6.86102353593719	7.04241526205955	6.54171770107131	6.58534838832828	6.86515459029509	6.89662223687418	7.00237343253648	6.91009033930545	0.211267180090338	0.322953475770793	0.634440486410161
Merged-chr1-180199687-3	chr1	180199580	180199780	+	899.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-3660.0	NM_001359268	67426.0	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	3.79033092128453	3.82558606052496	3.48288531645751	3.14747079131502	4.64017145746512	4.21524536018747	4.11003674803366	3.67369650118441	1.73043737652279	0.0012517801993572	0.0161121994231548
Merged-chr7-29169561-3	chr7	29169479	29169679	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182696)	promoter-TSS (NM_182696)	-631.0	NM_001358852	243897.0	Mm.389886	NM_182694	ENSMUSG00000031493	Ggn	AI593290	gametogenetin	protein-coding	3.5795286031676	3.62109516098169	3.57998076162853	3.48373572455029	4.30943684981625	4.44886866632539	3.69044036767925	4.52082510997523	1.96421803741351	3.49479741282764e-05	0.000826432508463982
Merged-chr9-31130480-2	chr9	31130380	31130580	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011176, intron 1 of 18)	intron (NM_011176, intron 1 of 18)	1319.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	3.28927323135324	3.24231421374673	3.52207924495377	3.51070278513054	3.42541482848209	3.52559840763258	3.55932590286439	3.71645215630563	0.50754069780189	0.319666343026439	0.631524558708573
Merged-chr1-36271665-4	chr1	36271575	36271775	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153408, intron 1 of 3)	intron (NM_153408, intron 1 of 3)	1750.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	5.20494700222791	4.85168815181325	5.0169717700497	4.69787753843885	4.91410354375959	5.04956454137658	4.81205847274985	5.44050634844088	0.255790626884198	0.462856427019255	0.744315966355727
Merged-chr11-61470263-3	chr11	61470161	61470361	+	872.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15170.0	NM_001347545	76293.0	Mm.272278	NM_029568	ENSMUSG00000042436	Mfap4	1110007F23Rik	microfibrillar-associated protein 4	protein-coding	2.8657279341186	2.87346842456353	2.86608493953382	3.00651296026569	2.49715028655999	2.61973606400327	3.12778015803919	2.86464108963793	-0.483142137298895	0.485320693852365	0.759216653544759
Merged-chr8-22895828-4	chr8	22895728	22895928	+	820.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 3 of 17)	intron (NM_001081149, intron 3 of 17)	36289.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	4.00423653305724	3.80135686776028	3.68540215288766	3.97429056237789	3.72614947475859	4.1754674566775	4.20138739978719	4.04868507191857	0.447290445231777	0.323304282828363	0.634756869516193
Merged-chr2-31108405-4	chr2	31108302	31108502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	MTD|LTR|ERVL-MaLR	-11902.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	5.68610599198147	5.93466556688087	5.68710041583666	5.89273787655184	5.44999953945126	5.34601830789008	5.73143566434982	5.75661634946275	-0.390661505587149	0.149452721357044	0.431699643087482
Merged-chr1-156450322-2	chr1	156450214	156450414	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_009230, intron 3 of 15)	intron (NM_009230, intron 3 of 15)	24014.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	4.33904757488232	4.27520419998249	3.85568020351537	4.14632691344813	3.06477724651935	3.28648558869579	3.30934669530949	3.52071869657587	-3.10120516236529	3.16862937136478e-07	1.22310124742068e-05
Merged-chr6-124806157-4	chr6	124806057	124806257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-2504.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	6.57885258809164	6.58544928425492	6.19602370709395	6.27859847310706	6.68204084539382	6.80203852104609	6.70804572671372	6.51066348122736	0.384841708084908	0.082162825816854	0.311210503342798
Merged-chr18-60753013-4	chr18	60752883	60753083	+	874.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4318.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	4.25181029466861	3.87897395475516	3.89971226764814	3.93184405449904	3.72045661448147	3.73612554583611	4.02588475220405	4.08584407501403	-0.265675305560126	0.556976504164544	0.802252160011434
Merged-chr5-29893972-3	chr5	29893861	29894061	+	627.966675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119153.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	2.60852040213999	2.40831588836148	2.46286263240415	2.46613023113125	2.97056609737368	2.84913111286652	2.90339152726017	2.80018988330162	1.99471484965415	0.00248572997325167	0.0276412707024028
Merged-chr17-83274108-6	chr17	83273875	83274075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58692.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	4.59319015686372	5.20356960884109	5.43934532765838	4.97104683188731	4.83426071788895	4.81882273326054	4.66139245849501	5.01819890837944	-0.483582508204679	0.180791949307892	0.477197691986
Merged-chr16-45032829-4	chr16	45032743	45032943	+	901.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-61168.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	4.56853940482621	4.59983700746789	4.20891063635358	5.04108148793469	4.5679252434721	4.5313557447865	4.33697323442118	4.25726751791661	-0.504131553211564	0.22467607555629	0.533198359017809
Merged-chr4-130797987-3	chr4	130797890	130798090	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	5453.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	2.85786704213514	3.00835345799485	3.1161900662073	3.04615386469643	2.95745201479709	3.22742808593047	3.16092934660216	3.27889487751071	0.573657876189739	0.318208983093908	0.630071136298021
Merged-chr10-94355243-4	chr10	94355137	94355337	+	987.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	43288.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	4.83314050516691	5.55427288194099	5.08839530028888	5.13040413497111	5.08168577919053	5.32543994283391	4.96137996579982	4.6133374862307	-0.305163915377701	0.394218944515098	0.693379056693329
Merged-chr10-40847400-4	chr10	40847296	40847496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027879, intron 7 of 14)	intron (NM_027879, intron 7 of 14)	35747.0	NM_027879	71713.0	Mm.46063	NM_027879	ENSMUSG00000038446	Cdc40	1200003H23Rik|EHB3|PRP17	cell division cycle 40	protein-coding	6.1109339115436	5.78085394717646	6.67624473569709	6.71032953753158	5.87684746595979	5.78737149043674	6.35974958735747	6.1689327924867	-0.483952598507654	0.114663572044786	0.374533599886066
Merged-chr7-96483064-4	chr7	96482960	96483160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-141096.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	6.55405988358622	5.6339130101166	7.05044575090843	7.03395849085858	6.00534695687027	5.96581837774416	6.0043913086544	5.98454237281183	-1.03829505387934	0.00164672893540513	0.0201085124194891
Merged-chr3-32397654-4	chr3	32397552	32397752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-31987.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	5.45081597088309	5.52766632461527	5.84531307470855	5.60963515449453	5.21592099242379	5.41028618660166	5.27251465717256	5.79823488074401	-0.306033142194066	0.303019573353695	0.615539788674154
Merged-chr11-100704335-4	chr11	100704208	100704408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030150)	promoter-TSS (NM_030150)	-37.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	6.84495272012289	6.96922362317226	6.80460941563225	6.58202268806756	6.7823367952208	6.92372367291382	6.6213578057496	7.10975532145867	0.0994883954642221	0.647866575712028	0.85185825899816
Merged-chr2-166746684-3	chr2	166746589	166746789	+	888.4166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTRETN_Mm|LTR|ERVK	-32857.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	2.93246598436703	3.361555318448	3.31010210820698	2.66840336569724	3.3701969379809	3.18351148488867	3.24115352335478	3.4129921315654	0.780140082424501	0.216864224832391	0.523576380620064
Merged-chr18-74207865-4	chr18	74207749	74207949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164355)	promoter-TSS (NM_001164355)	-31.0	NM_025581	66468.0	Mm.283406	NM_025581	ENSMUSG00000036223	Ska1	2810433K01Rik|AV117428	spindle and kinetochore associated complex subunit 1	protein-coding	6.9534664482766	7.22874707497022	6.90258590494249	7.02150050665553	6.95350586989241	6.8148491466006	6.85431086695959	6.69634490847916	-0.27414290169336	0.169191677492175	0.46170705970244
Merged-chr6-99096244-4	chr6	99096157	99096357	+	862.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053202, intron 4 of 18)	intron (NM_053202, intron 4 of 18)	-67959.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	4.87552372700208	4.33041977822613	4.60244275930535	4.82109126796152	4.22823183718917	4.16199874059343	4.61804556806292	4.39232601097874	-0.725554973681355	0.0674854252839146	0.277226335817012
Merged-chr19-46395770-4	chr19	46395685	46395885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016860)	promoter-TSS (NM_016860)	-50.0	NM_016860	54130.0	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	5.37458848581042	5.7229659795703	5.40669911213652	5.52555094168391	5.64591095752757	5.69978035040634	5.87875674764554	5.67872930523724	0.346659257208117	0.194184700350434	0.494609868894025
Merged-chr6-136654615-4	chr6	136654519	136654719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	7274.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	6.93581011072834	6.53274753065787	6.97587998043699	7.04108524907776	7.07082694594327	6.97561709993705	7.03829943376651	7.43416982388528	0.346350980226119	0.115390819029078	0.375801776900946
Merged-chr13-81208227-4	chr13	81208107	81208307	+	964.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	244133.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	5.01931918096132	4.22297522765291	4.82059713226651	5.33606648293838	4.7663308900483	4.4790231549306	4.64590997033542	4.78084095446876	-0.509541004565627	0.221552933198437	0.529600571989508
Merged-chr18-73703186-4	chr18	73703052	73703252	+	956.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155448)	promoter-TSS (NR_155448)	589.0	NM_008540	17128.0	Mm.100399	NM_008540	ENSMUSG00000024515	Smad4	AW743858|D18Wsu70e|DPC4|Madh4	SMAD family member 4	protein-coding	4.69952026148031	4.42324146856687	5.21216421043342	4.77628726137101	4.51499741931249	4.44282378926972	4.34265475993217	4.45210964185465	-0.792415854241263	0.0416843639513084	0.206734346550319
Merged-chr17-6962543-2	chr17	6962443	6962643	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1387.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	2.18905523583199	2.1441221324103	2.18922127357139	1.91043714853875	2.68233396568376	2.94030664182344	2.86360824490636	2.87607140305998	6.77855610630272	9.71796619863931e-11	7.45382668160503e-09
Merged-chr11-79340228-4	chr11	79340124	79340324	+	896.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 1 of 57)	CpG	332.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	4.14047133287986	4.36631638580315	3.92042674519968	3.90644835522579	4.61097513263071	4.62717702843386	4.39494830198026	4.60330497018656	1.1347563203798	0.00401696696884156	0.0402029937957218
Merged-chr13-64120969-3	chr13	64120879	64121079	+	837.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001321, intron 2 of 11)	intron (NM_001001321, intron 2 of 11)	8351.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	3.21454292549964	3.59913034477215	3.46017174773955	3.24738765933187	3.38738079210107	3.394440173979	3.74099196842137	3.66429282352146	0.564345847580365	0.280482537282551	0.592505312991087
Merged-chr13-34216815-1	chr13	34216715	34216915	+	638.0	f0_c57.idr	intron (NM_001033167, intron 4 of 10)	MTC-int|LTR|ERVL-MaLR	53851.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	2.28658373526846	2.15875670950576	2.20244714956239	1.93719611279261	2.97107416718937	2.69510230580878	2.91650015216344	2.70755888619295	6.09752522451355	1.81127688846454e-09	1.10760204161527e-07
Merged-chr15-91180819-1	chr15	91180719	91180919	+	688.5	f0_balb.idr	intron (NM_011994, intron 3 of 9)	MTD|LTR|ERVL-MaLR	11188.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	3.44176531312914	2.99277446040585	3.59336587589355	3.29744408085726	3.68309464015583	3.32073550827973	3.25924457135991	3.32879622405	0.245532490467455	0.667666667554337	0.862592523649587
Merged-chr4-22402271-3	chr4	22402208	22402408	+	964.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172988, intron 5 of 8)	ORR1B1|LTR|ERVL-MaLR	44765.0	NR_104380	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	3.45995053763412	3.28913602753467	3.27354908628218	3.68001230611714	3.47055344158166	3.51593433723155	3.83914755695835	3.81142356742137	0.686340507989674	0.197141294790599	0.498437110190953
Merged-chr17-65735224-2	chr17	65735124	65735324	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	L1MA6|LINE|L1	37528.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	2.99656272827026	3.16321388311257	2.93726045496544	2.84454004249036	2.97982889101968	2.98216813471857	2.66068854699552	2.87334993304762	-0.454444165427256	0.469032422715965	0.748076114999735
Merged-chr18-67392347-4	chr18	67392253	67392453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026473, intron 2 of 3)	intron (NM_026473, intron 2 of 3)	1622.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	7.55469394324505	7.30571358696823	7.31200253186289	7.7229901016501	6.90309239128463	7.29967882553002	7.06209191668695	7.24316090530736	-0.495167311132486	0.0159266801328557	0.109340775962243
Merged-chr18-39021039-4	chr18	39020942	39021142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 1 of 21)	intron (NM_001361073, intron 1 of 21)	27897.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	6.74000228627341	6.59408524468878	6.67069039069759	6.9132541926516	6.34122108148521	6.0485273953094	6.32686365531265	6.33617105112475	-0.689280497029815	0.00186309631296852	0.0221392328333211
Merged-chr18-75218980-1	chr18	75218880	75219080	+	643.5	f0_balb.idr	intron (NM_027727, intron 14 of 16)	L1MC5a|LINE|L1	78337.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	3.18863925145655	3.16735227938716	3.24447687123485	3.2330979614112	2.6315151802517	3.18233177265118	2.86231419808823	3.2955876667565	-0.776203423379911	0.237649426365944	0.547822026015335
Merged-chr6-124894208-4	chr6	124894113	124894313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-6013.0	NM_013488	12504.0	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	5.68507467307816	5.67064266507904	5.97416467471282	5.13518320400516	5.53612714877627	5.61678901255881	5.44186657034389	5.92967817993609	0.0142875316803147	0.964045997107462	0.987264657623366
Merged-chr2-13559511-4	chr2	13559403	13559603	+	894.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14808.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	4.36999462639869	4.4362502249438	4.41315545208793	4.47091596749524	4.26820263473864	4.2598146922334	4.47324232804938	4.41036142322759	-0.175624039165983	0.636517267459098	0.846283673250294
Merged-chr1-33765738-4	chr1	33765625	33765825	+	947.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359275, intron 14 of 15)	intron (NM_001359275, intron 14 of 15)	-7975.0	NM_145392	213539.0	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	4.54490638668815	4.80767491222018	4.90468120325723	5.07628248564872	5.21693561544498	4.5828428188474	4.5701711101771	5.09430979312321	0.103937227506687	0.78445060635838	0.916076100794651
Merged-chr15-86228399-4	chr15	86228312	86228512	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	Tigger5b|DNA|TcMar-Tigger	13953.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	4.79367483499119	4.75903820271571	4.64695771889446	4.52483908911335	4.7117631347422	4.61118327041776	4.50356836863833	4.64393610512166	-0.107720764946769	0.757714407566291	0.904815773586341
Merged-chr15-3271475-3	chr15	3271391	3271591	+	930.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009155, intron 1 of 4)	intron (NM_009155, intron 1 of 4)	514.0	NM_009155	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	3.98944241384876	4.07026303815407	4.17234024365649	3.89213760735893	3.69275244590114	4.16234348452808	3.87239759775063	4.16966488731094	-0.12711854319349	0.775583629422282	0.912391634160948
Merged-chr12-111525064-3	chr12	111524898	111525098	+	643.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13103.0	NM_178041	217869.0	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	3.05250793602835	3.48946092644389	3.2767572571681	2.55038345594287	2.77253258654389	2.8955415811319	2.77568408335436	3.16774993114644	-0.928501710462757	0.191872489278014	0.491357867037947
Merged-chr19-11494730-4	chr19	11494622	11494822	+	904.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164202, intron 1 of 4)	intron (NM_001164202, intron 1 of 4)	2684.0	NM_001164202	666926.0	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	4.61215526416333	4.2310034649591	4.49363125151482	4.4785946832707	4.86746970478517	4.53676737515436	4.69884120830426	4.26566245636195	0.366928292536375	0.340046150814061	0.649078706591421
Merged-chr12-111377765-4	chr12	111377679	111377879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183016)	promoter-TSS (NM_183016)	-61.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	7.95800082101331	8.10744167862932	8.12293101543739	7.64064979756635	8.08562903938073	8.15767762839987	8.05959929187588	7.85206848420401	0.105271313531729	0.571520252969178	0.81067017568588
Merged-chr2-156393904-4	chr2	156393807	156394007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024329)	promoter-TSS (NR_024329)	-928.0	NR_024329	347740.0	Mm.324242	NR_024329	ENSMUSG00000102869	2900097C17Rik	1810005K14Rik|4930563C06Rik	RIKEN cDNA 2900097C17 gene	ncRNA	5.34903753890507	5.9762720191861	5.38275250959969	5.37790248265702	6.07265462283024	5.99240014129845	5.7885528599552	5.74310471113378	0.597064561332979	0.0400839726975991	0.201992006558755
Merged-chr14-52009015-4	chr14	52008911	52009111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001253695, exon 3 of 5)	exon (NM_001253695, exon 3 of 5)	5547.0	NM_001253695	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	5.88301528986039	5.98164426728855	5.50754376406488	6.11596188835831	5.94654163493877	5.71796150430727	6.1049668043338	6.18786308836204	0.148436555990212	0.586429090476323	0.818630554682073
Merged-chr10-5600343-4	chr10	5600211	5600411	+	859.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026793, intron 1 of 1)	intron (NM_026793, intron 1 of 1)	6583.0	NM_026793	68632.0	Mm.338242	NM_026793	ENSMUSG00000046916	Myct1	1110020B04Rik|AI225941|AI642973|Mtmc1	myc target 1	protein-coding	4.0942695674223	4.07273767876356	4.45727443652002	4.27687948505358	4.40797614968191	4.41657533417048	4.31356364297108	4.56728639819289	0.458233550475353	0.236657483400407	0.546655618028751
Merged-chr5-108268820-4	chr5	108268718	108268918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026106)	promoter-TSS (NM_026106)	-79.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	7.20082747392317	7.46594184412966	7.19063380278859	7.57242374875597	7.38794032189309	7.01326570992926	7.71667921577739	7.13879095795689	-0.0410651002429016	0.853985517338164	0.944993161871772
Merged-chr15-36367528-4	chr15	36367400	36367600	+	876.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-84353.0	NM_001357631	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	4.24695397038532	4.82809884338584	4.42739499040938	4.40607162364215	4.3922251798644	4.42299767833813	4.32142244230856	4.24504421730329	-0.343420639977751	0.381590315117348	0.683817146015552
Merged-chr17-83219502-3	chr17	83219397	83219597	+	778.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134117, intron 1 of 6)	intron (NM_134117, intron 1 of 6)	4214.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	3.1583924700862	3.14768244468096	3.2700744176952	3.36258486961572	3.06684164911486	2.77858975505874	2.89482046651531	3.4182841639644	-0.691364305271644	0.274702954732604	0.586422385955434
Merged-chr18-39623366-4	chr18	39623278	39623478	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-136133.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.77138438041135	4.65579649187318	4.57829893618357	4.50614311899743	5.19010989839836	4.71129108421189	4.42665486822948	4.53287692623093	0.302191124258525	0.432795058441993	0.722617800775084
Merged-chr16-55812016-4	chr16	55811909	55812109	+	892.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159394, exon 12 of 12)	3' UTR (NM_001159394, exon 12 of 12)	10129.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	4.58238567471988	5.18989532780632	4.36213026062153	4.57241052920319	4.69089095042565	4.44299925686301	4.52103038499776	4.49632685987271	-0.368721722076679	0.355229147290497	0.661813745489821
Merged-chr4-155562242-5	chr4	155562075	155562275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138671)	promoter-TSS (NM_138671)	-206.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	6.09390556356169	6.39237969813043	6.81743311386269	6.00990726824198	6.71688867332027	6.67533724117908	5.99441625855693	6.85027553539837	0.351047302105806	0.230743707362472	0.540242548931978
Merged-chr10-98941059-3	chr10	98940938	98941138	+	660.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	25886.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	3.2693036211876	3.37192376997005	3.55282730114659	3.41230534295806	3.51906060577546	3.56136604317346	3.48689198642937	3.38866532936515	0.290177347318325	0.561464517811996	0.80494560024742
Merged-chr8-13869711-4	chr8	13869597	13869797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181854)	promoter-TSS (NM_181854)	56.0	NM_181854	101994.0	Mm.289346	NM_181854	ENSMUSG00000047710	Champ1	AA675043|AI116001|D8Ertd457e|D8Ertd569e|Zfp828|Znf828|mKIAA1802	chromosome alignment maintaining phosphoprotein 1	protein-coding	6.78256620584156	6.83155360805943	6.90343589444312	6.75084615477656	6.46279294381798	6.68090872329684	6.9300214565196	6.38973500169053	-0.266415407742449	0.223146995095642	0.531181190686666
Merged-chr6-118562298-4	chr6	118562167	118562367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081112)	promoter-TSS (NM_001081112)	-11.0	NM_001081112	232339.0	Mm.276116	NM_001081112	ENSMUSG00000007827	Ankrd26	5730521P14Rik|BC008111|mKIAA1074	ankyrin repeat domain 26	protein-coding	5.82531223708831	5.88306896698967	5.64790628137094	5.86378160483918	5.56311651400711	5.76971458370402	6.12699364679131	6.07911235023363	0.134307879420968	0.618775159771142	0.836062966920086
Merged-chr7-49923604-4	chr7	49923496	49923696	+	897.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146013, intron 5 of 15)	intron (NM_001146013, intron 5 of 15)	11896.0	NM_148931	104245.0	Mm.207053	NM_148931	ENSMUSG00000039728	Slc6a5	Glyt2|prestin	solute carrier family 6 (neurotransmitter transporter, glycine), member 5	protein-coding	4.83026543304626	5.16125825493227	4.55202017495862	5.09993903435854	4.75765789835285	4.68498050097706	4.73490520970891	4.40874560592991	-0.595226264108311	0.10337207463141	0.353254142575597
Merged-chr7-27526677-4	chr7	27526579	27526779	+	761.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033315, intron 1 of 3)	intron (NM_001033315, intron 1 of 3)	3418.0	NM_001033315	233020.0	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	4.42165339160573	4.37935718875535	4.42235406914724	4.03381986920412	4.343566607486	4.55286658020394	4.31555616543923	4.75170332841381	0.4451849503408	0.260462146620271	0.572275439384006
Merged-chr14-34570484-3	chr14	34570383	34570583	+	802.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039073, intron 6 of 14)	intron (NM_001039073, intron 6 of 14)	18124.0	NM_001039074	24131.0	Mm.29733	NM_011918	ENSMUSG00000021798	Ldb3	AW742271|PDLIM6|ZASP	LIM domain binding 3	protein-coding	3.65765756242547	3.46900971781477	3.07335830784701	3.56817325962294	3.60340843484589	3.38967267912736	3.32750602387278	3.55845643917727	0.0462635676300749	0.932632352000721	0.975722604390767
Merged-chr13-56626706-4	chr13	56626600	56626800	+	880.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 6 of 16)	L3b|LINE|CR1	17114.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	4.87533743861496	4.624574978083	5.03219047415464	5.16820240408017	4.33653374619243	4.37491614157591	4.51432111985876	4.44232417972544	-1.16868529046609	0.00151383121884229	0.0188148250813353
Merged-chr2-170170391-4	chr2	170170291	170170491	+	878.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27716.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	4.57411121595349	4.72257881254598	4.73682181443611	4.52416446642403	4.81084816874726	5.08413041715218	4.82273900953833	4.65534980489415	0.450549083119489	0.185982472672044	0.483915587117665
Merged-chr3-51778470-3	chr3	51778364	51778564	+	856.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	117285.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	4.09503146547382	4.50783209407429	4.23309654954341	4.37613703344279	4.29674658342373	3.94952501948345	3.92633222241473	3.93963550487375	-0.677851817758578	0.1165816399383	0.377755931586846
Merged-chr10-112163635-4	chr10	112163486	112163686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310675)	promoter-TSS (NM_001310675)	-35.0	NM_001310675	353025.0	Mm.194428	NM_178278	ENSMUSG00000035694	Caps2	D630005B03Rik	calcyphosphine 2	protein-coding	5.80019471418662	5.3000876280044	5.54057922027186	5.39304822751903	4.82193742406441	4.60539915670734	5.01756190985883	5.03866944837711	-1.18751023130481	0.000289062540625299	0.00492464877433417
Merged-chr11-111312352-2	chr11	111312252	111312452	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	246188.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	2.60733335405095	2.69769783631775	2.386517606797	2.57476249818824	2.75983057687781	2.77982771730904	2.84292062105572	2.79565238818349	1.07998940023068	0.100782891930554	0.348474099968014
Merged-chr1-33877953-2	chr1	33877853	33878053	+	940.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 3 of 6)	intron (NM_177235, intron 3 of 6)	29668.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	3.18693075213827	3.07318388821908	2.87605519014034	3.08432465925928	3.1654459314799	3.11791706007855	3.17490631179364	3.12913179906688	0.342186706055371	0.541834389162804	0.793491190310592
Merged-chr11-31733141-4	chr11	31733035	31733235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61273.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	7.19724108169423	7.58515987624152	7.94035889375259	7.99120184629882	8.55578703765539	8.35045827543485	8.04241450869761	8.15532994394166	0.732252190053888	0.00114299070132147	0.0149911433811242
Merged-chr10-127592626-4	chr10	127592532	127592732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 10 of 88)	intron (NM_008512, intron 10 of 88)	28516.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	5.2354121744944	4.96972236790913	5.14425907640478	5.2848403557505	4.98725952365007	5.14906744305902	5.05428880372091	5.14074232453857	-0.177038993817185	0.560815132536949	0.804731028246143
Merged-chr4-40776606-4	chr4	40776514	40776714	+	929.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-18729.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	4.84396913051118	4.41952367546105	3.9924603989674	4.36093278442803	4.39398925488405	4.27645249910832	4.60058573630204	4.42649261500495	-0.0148795826813547	0.971594987869531	0.989698355367312
Merged-chr8-13287519-4	chr8	13287463	13287663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172282)	promoter-TSS (NM_172282)	-450.0	NM_172282	234076.0	Mm.219813	NM_172282	ENSMUSG00000038497	Tmco3	B230339H12Rik|C87304	transmembrane and coiled-coil domains 3	protein-coding	7.70765158770196	7.89656237277041	7.43412530850884	7.86086820101283	7.80694799380272	7.87813440630086	8.02586824624104	7.57386186135961	0.112731957155313	0.557367627678725	0.802589488416607
Merged-chr3-41405025-4	chr3	41404918	41405118	+	952.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88181.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	5.07161608443079	4.55525060552551	4.9436059149173	5.3844028521146	4.71883249125006	4.81589448397416	4.73919665996708	4.63551945438402	-0.632218025597937	0.086604016207982	0.321061836961872
Merged-chr8-34107523-2	chr8	34107424	34107624	+	624.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011722, intron 1 of 6)	MTD|LTR|ERVL-MaLR	290.0	NM_001293758	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	3.21681298622063	3.10812434797153	2.96363736671361	3.3307711392428	3.3030360460573	3.20570334719185	3.36516560208636	3.21556163288389	0.378773866841716	0.498202017289991	0.767539498804104
Merged-chr13-64257167-1	chr13	64257067	64257267	+	559.0	f0_balb.idr	intron (NR_045798, intron 1 of 2)	ORR1B1|LTR|ERVL-MaLR	8467.0	NR_045798	66503.0	Mm.443331	NR_045798	ENSMUSG00000097101	1810034E14Rik	-	RIKEN cDNA 1810034E14 gene	ncRNA	2.53074826326843	2.54608089232855	2.64916715520071	2.55976153420621	2.18399197078075	2.27882253150043	2.17451313887934	2.52974827399481	-1.72099642811971	0.0327488851401334	0.177388693719479
Merged-chr17-37524765-4	chr17	37524668	37524868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5189.0	NM_001005485	545205.0	Mm.383371	NM_001005485	ENSMUSG00000090675	Olfr111	-	olfactory receptor 111	protein-coding	6.21028702461316	6.08970607389067	6.44253530936027	6.15085263744153	6.1636165992399	6.24341636114037	6.25497208899277	6.31885730784742	0.0322581234153006	0.887407552880433	0.957799052224803
Merged-chr10-60282828-4	chr10	60282738	60282938	+	991.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 1 of 14)	intron (NM_011179, intron 1 of 14)	-1623.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	6.03132031533288	5.4070434498211	6.60090328998032	6.5007731656729	6.3891852649178	5.79464589612837	6.38353126882355	6.52269071809847	0.124538227258833	0.708126878029558	0.882710273980338
Merged-chr10-94147900-4	chr10	94147787	94147987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011629)	promoter-TSS (NM_011629)	-44.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	6.85861845876626	6.90707157538092	6.53555033529621	6.59291811613087	7.04275843610044	7.12786334745084	7.00169407186065	6.93403787120242	0.421898957052372	0.0378830738500623	0.194691647189428
Merged-chr4-94901859-3	chr4	94901754	94901954	+	617.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26989.0	NM_027089	67753.0	Mm.25097	NM_027089	ENSMUSG00000028575	Eqtn	1700028B15Rik|4930579C15Rik|Afaf|C81058|Eqtl|Eqts	equatorin, sperm acrosome associated	protein-coding	2.91841374257679	3.15888735220466	2.98572407503199	3.112928443487	3.3859059680064	3.22049687205861	3.26684071288338	3.16858602815073	0.825899995578324	0.140429220680409	0.416699473728646
Merged-chr18-4279348-4	chr18	4279242	4279442	+	785.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	73611.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	3.70950722927005	3.78676529985143	3.54006115329478	3.57968951990728	3.76448112786379	4.02853435777567	3.64151602519936	3.85795013380578	0.516506506437268	0.263863610031369	0.575926770059883
Merged-chr1-125438154-4	chr1	125438060	125438260	+	984.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2433.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	5.19926630564149	5.09566961602446	5.20015610313874	4.95211119901281	4.99789719543429	5.3418004065159	4.90620656960779	5.16575823496592	0.00658150802944936	0.983235705766544	0.993973908402019
Merged-chr3-51859385-4	chr3	51859298	51859498	+	899.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	198219.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	4.53700950633896	4.10938843886623	4.61246605906973	5.00879853767646	4.06010421435589	4.09234612232387	4.35385802780664	4.37088906779676	-0.930362571235725	0.0333873098938055	0.179682090649568
Merged-chr15-59041809-4	chr15	59041682	59041882	+	968.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	40244.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	5.30106224732296	5.23729596103878	5.35986458716541	5.57472342523035	5.17586244297998	4.89450914861496	5.38800860952134	5.10703086850161	-0.422128910893392	0.169661557680085	0.462340735609141
Merged-chr14-25487184-4	chr14	25487100	25487300	+	972.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	28015.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	4.93888362192865	5.1988002854067	4.90370688357081	5.11541812196232	4.81700235781302	5.1126486773194	4.80638523443754	4.97139068142819	-0.252804503844495	0.430820275283794	0.721309079893587
Merged-chr15-58803099-3	chr15	58803005	58803205	+	874.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175212, intron 1 of 6)	intron (NM_175212, intron 1 of 6)	20322.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	3.56273141495312	3.44415998577806	3.67920123928974	3.85959207854441	3.78616448975003	3.68105885398684	3.95766693262643	4.21268779796768	0.761897913848858	0.122505072800523	0.387908206631453
Merged-chr1-133025923-1	chr1	133025823	133026023	+	745.0	f0_balb.idr	promoter-TSS (NM_001302803)	promoter-TSS (NM_001302803)	-507.0	NM_001302801	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	3.74698454159213	3.82208577311183	3.45408265449467	3.98984673879879	3.91960773097577	3.75507324982174	3.62426126943586	4.02682660829251	0.17765776443118	0.716423726650467	0.8866074790069
Merged-chr7-139213290-4	chr7	139213170	139213370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162540)	promoter-TSS (NM_001162540)	-5.0	NM_001143755	76612.0	Mm.17757	NM_027164	ENSMUSG00000015980	Lrrc27	1700071K18Rik|2310044E02Rik	leucine rich repeat containing 27	protein-coding	7.96563728804292	7.99075424541507	7.26251035083123	7.75653274386572	8.27916211563986	8.51212777446834	8.30541238084118	8.17935587149798	0.701713143587063	0.000562431971085625	0.00848343828563334
Merged-chr5-45856641-4	chr5	45856510	45856710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172153)	promoter-TSS (NM_172153)	-58.0	NM_172153	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	6.85540173125214	6.50890459078251	6.50321535654788	6.73418326644628	6.69448554068022	6.39710021231175	6.40044050885463	6.77233499101184	-0.113653193969075	0.612138147177941	0.832680684364583
Merged-chr5-72552879-3	chr5	72552736	72552936	+	919.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153351, intron 3 of 21)	intron (NR_153351, intron 3 of 21)	6809.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	3.36560925642126	3.29369337503266	3.57015453101085	3.55912562612963	3.17237837131844	3.36216880524716	3.1777554480987	3.18682822142518	-0.858287624461267	0.112052293121701	0.369950840582101
Merged-chr7-16738354-4	chr7	16738253	16738453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198613)	promoter-TSS (NM_198613)	-91.0	NM_198613	232910.0	Mm.333597	NM_198613	ENSMUSG00000008036	Ap2s1	AI043088	adaptor-related protein complex 2, sigma 1 subunit	protein-coding	7.79592158366599	7.90845551057412	8.13379001996217	8.15932629125445	7.79954411886161	7.87650256382086	8.05856680394808	7.78404352561364	-0.170141263923992	0.336452352558887	0.646448793467285
Merged-chr10-58399589-4	chr10	58399491	58399691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359116, intron 2 of 9)	intron (NM_001359116, intron 2 of 9)	5218.0	NM_001346676	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	6.13750273181479	6.15981944198481	6.45040751160449	6.51703442266705	6.074049436057	6.13815691758406	6.48038051459669	6.09190793073283	-0.202951661376769	0.408404289440454	0.704329923147872
Merged-chr11-98121893-6	chr11	98121729	98121929	+	972.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028149, intron 2 of 14)	intron (NM_028149, intron 2 of 14)	27787.0	NM_028149	72194.0	Mm.218350	NM_028149	ENSMUSG00000020883	Fbxl20	2610511F20Rik|4632423N09Rik|AI849362|AL117906|C86145|Fbl2|Scr|mKIAA4147	F-box and leucine-rich repeat protein 20	protein-coding	4.63466911180971	4.49916649841832	4.15305238127635	4.50730236141034	4.83871053756338	4.42856446069622	4.32941895442717	4.59521084184981	0.253982331277436	0.514926583592049	0.7773081172237
Merged-chr19-17359660-5	chr19	17359519	17359719	+	909.4933470000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	-2952.0	NM_173442	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	4.90338632517065	4.68491526535185	5.39041496183563	5.07686095136232	4.67348136422403	4.58091711305433	4.61157108860093	4.86548660321968	-0.714715526186654	0.0463117100726405	0.221144315243523
Merged-chr17-65674772-4	chr17	65674655	65674855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 5 of 6)	intron (NM_133685, intron 5 of 6)	-32551.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	6.36733866803854	6.3460278715631	6.45671448345847	6.55978152696617	6.46999634971069	6.43081490501581	6.64112157620159	6.46902267626367	0.0878189942619238	0.680966041448047	0.869036611076104
Merged-chr6-134706662-3	chr6	134706569	134706769	+	898.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170479, intron 3 of 3)	intron (NM_001170479, intron 3 of 3)	65729.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	4.10984259034392	4.21948257530527	4.20350536009473	4.53810436528829	4.47839344403625	3.96504462564613	3.88677196872389	4.10801419663565	-0.36231369650368	0.41869620771274	0.712026139364466
Merged-chr4-8690687-6	chr4	8690611	8690811	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001277149, exon 1 of 38)	5' UTR (NM_001277149, exon 1 of 38)	305.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	4.97543547375451	4.86777857881865	4.72166024595267	4.71744862422687	4.83145349278649	4.77283867923728	4.8140693079851	5.15619723417342	0.171252682252894	0.60658235714869	0.829492720591086
Merged-chr7-138389243-4	chr7	138389151	138389351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183289, intron 3 of 11)	intron (NM_183289, intron 3 of 11)	8479.0	NM_183289	70571.0	Mm.334297	NM_183289	ENSMUSG00000091002	Tcerg1l	5730476P14Rik	transcription elongation regulator 1-like	protein-coding	6.07950643986179	6.24188704932334	6.50836957008183	6.48094110572354	5.88042436322534	6.16953791896364	5.98449631221237	5.89397737979486	-0.565611252550552	0.020311692115981	0.129317167542345
Merged-chr1-93825403-4	chr1	93825288	93825488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310767, exon 1 of 10)	5' UTR (NM_001310767, exon 1 of 10)	148.0	NM_001310767	98314.0	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	7.17899392920552	7.42321250229387	8.20825524592192	7.51877292803058	6.86320851654562	7.35834249740269	7.02153953721798	7.51236630136155	-0.574896401849845	0.0311891254046888	0.171827237665823
Merged-chr11-59965406-4	chr11	59965315	59965515	+	803.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009026)	promoter-TSS (NM_009026)	-471.0	NM_009026	19416.0	Mm.3903	NM_009026	ENSMUSG00000049892	Rasd1	Dexras1	RAS, dexamethasone-induced 1	protein-coding	4.23383030642374	3.77912796043681	3.6751549702836	3.56383441084571	3.88633097805623	3.67232696952135	3.77144215949696	4.2316602270868	0.220482397535293	0.657773493392998	0.857518626462393
Merged-chr3-79128953-3	chr3	79128868	79129068	+	920.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	15919.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	3.57076803556714	3.33585824014207	3.62242590124063	3.03921389646966	3.71333954049894	3.7920276283675	3.448785697831	3.21252555673488	0.520916595214334	0.357807163546405	0.663866486000028
Merged-chr4-6223242-3	chr4	6223140	6223340	+	952.5833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32135.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	3.33592224589394	3.03825917002238	3.04295234165619	3.26151235844961	3.93189695483593	3.70092397037396	4.02095030414019	4.07659731492321	2.44157574004957	1.46976551165687e-05	0.000389193930587958
Merged-chr12-38767357-4	chr12	38767266	38767466	+	949.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11C_MM|LTR|ERVK	-12716.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	4.87084070415518	5.53789939363171	5.60356609497564	5.40880567520949	5.29735248861127	5.05169500353545	5.03809976704208	5.02313979108354	-0.498235298916358	0.128556321701035	0.39892363860659
Merged-chr5-141056189-4	chr5	141056077	141056277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55581.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	6.58070522986981	6.73883456773369	6.61365286578269	6.63384556010649	6.63821445763944	6.65812123871925	6.57995948582781	6.72854817779414	0.0103488498621301	0.958754473177293	0.985261963592726
Merged-chr16-13644664-3	chr16	13644581	13644781	+	888.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358452, intron 11 of 22)	L1MC4|LINE|L1	23489.0	NM_001358452	74108.0	Mm.182350	NM_028761	ENSMUSG00000022685	Parn	1200003I18Rik|DAN	poly(A)-specific ribonuclease (deadenylation nuclease)	protein-coding	3.72302213072659	3.44067679726145	3.72356959192099	3.96959007585083	3.54662882937358	3.68423051000113	3.24867379186773	3.5658212579682	-0.688710964192393	0.18782738769382	0.486264844280875
Merged-chr17-44436740-4	chr17	44436642	44436842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	248170.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	5.87016269909986	5.46502111797193	5.2097658101516	5.55753955733277	6.03957033092886	5.39053792101601	5.86224647304433	5.60568788937771	0.356121817226774	0.241629059504188	0.552132097157258
Merged-chr8-41133635-5	chr8	41133460	41133660	+	877.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001005863, exon 1 of 14)	5' UTR (NM_001005863, exon 1 of 14)	166.0	NM_001005863	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	4.04306175084027	3.53690761238755	4.26284635068513	3.84121047320086	3.78700189524034	4.01587326427509	4.1170152126407	4.48029469331502	0.473646059701832	0.331872518691526	0.642938752527011
Merged-chr9-32032228-4	chr9	32032103	32032303	+	986.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-83933.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	5.00124037645364	4.74655302287614	5.036295595924	5.58762329897613	5.016847434256	4.91196795690057	5.13904947656793	4.85205890857659	-0.32459554695713	0.370622037103056	0.674860859945465
Merged-chr15-84995284-4	chr15	84995168	84995368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7297.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	6.8212329648069	6.660565777839	6.59913102445885	6.75461167797916	6.76109108635595	6.63946037636751	6.67413043134082	7.10804441427718	0.13563633926813	0.524828845988706	0.78311175823405
Merged-chr2-72852725-4	chr2	72852620	72852820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39003.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	7.46093748276746	7.40514900985482	7.30117359613816	7.49854448318747	7.46358339105293	7.55113741429011	7.56763356987686	7.40888308613574	0.0981927903004562	0.569357823680578	0.809366519988776
Merged-chr1-106232019-3	chr1	106231923	106232123	+	906.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	60154.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	3.96618507365798	3.85021966078049	3.96677696646548	3.84024840183607	3.75411196038715	3.88365309986475	4.03867491520531	3.86729544757725	-0.0459096645746399	0.916042346555465	0.968912323381988
Merged-chr15-93276449-3	chr15	93276341	93276541	+	931.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1262.0	NM_001346785	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	3.94233138452955	3.92825798815977	4.45811175060049	4.33896096835127	3.83459827259249	4.0662109146596	3.81810212427532	4.30581881489423	-0.456777374819054	0.319487042623703	0.631354790719135
Merged-chr2-165993794-4	chr2	165993675	165993875	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	1138.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	4.8448693493912	4.69893961700194	4.98443727030464	4.9496926508542	4.87417540920234	4.86557807389648	4.78585176913587	4.98104744251963	-0.000513676929697971	0.998734428999001	0.999449015879545
Merged-chr7-7210018-4	chr7	7209910	7210110	+	969.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145577)	promoter-TSS (NM_145577)	-12.0	NM_145577	232855.0	Mm.360403	NM_145577	ENSMUSG00000066838	Zfp772	-	zinc finger protein 772	protein-coding	5.38179570280748	5.32795790728121	5.20004080005266	4.93253170853046	5.60016548247337	5.30940310518089	5.53865420845432	5.12935033560579	0.380978321003571	0.219812684083438	0.527421906828108
Merged-chr17-10318259-4	chr17	10318161	10318361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021881, intron 1 of 6)	CpG	1100.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	6.59700009094857	7.04550400038317	6.89258186043203	6.73745704326276	7.02522549548482	7.20342397914865	6.62879705659314	6.67326507718907	0.111900322256025	0.627082985069987	0.841002239063709
Merged-chr12-69417835-3	chr12	69417773	69417973	+	869.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45723.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	3.66173771669206	3.82287781623907	3.61217866851383	3.87705912618118	3.22633215125939	3.30639013985028	3.37758370519636	3.32599391088728	-1.57190831331065	0.00272990386016786	0.0296568722318206
Merged-chr2-30066345-4	chr2	30066284	30066484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204875)	promoter-TSS (NM_001204875)	-90.0	NM_001204875	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	7.82990487339277	7.84088986257986	7.52961018917274	7.70199118128394	7.83713366801696	7.98604229517515	7.97912330797865	7.38431625110623	0.113619368019803	0.565935251731907	0.807783748011785
Merged-chr2-6705774-4	chr2	6705652	6705852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	15910.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	5.99024644876242	5.52396712205658	5.53829488235286	6.04504973646559	5.72949414377866	5.56505937751418	5.53874861476621	5.79271432242805	-0.242992643581493	0.393048205546213	0.692266411611797
Merged-chr19-5511338-3	chr19	5511218	5511418	+	869.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024560)	promoter-TSS (NM_001024560)	-801.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	3.38557225543865	3.41373222483059	3.26296958929198	3.34944234276561	3.27366852003488	3.55992099717693	3.37323359254068	3.90653824288373	0.643117405696341	0.226430157147231	0.535042066048626
Merged-chr1-166137702-4	chr1	166137607	166137807	+	976.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360925, intron 1 of 5)	intron (NM_001360925, intron 1 of 5)	7486.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	5.93478609790662	5.49108410059421	5.69242644581821	6.03476476706542	5.43866503265053	5.40543334235578	5.01310320149305	5.63858544154156	-0.715046627224303	0.0185380443814652	0.121738118002427
Merged-chr11-67537562-4	chr11	67537455	67537655	+	862.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	4557.0	NM_008088	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	3.93883474567842	4.24255314028274	4.05364708766548	4.2450999596617	4.46201568578087	4.38555142384225	4.85243008276926	4.61985738337077	1.05258432818921	0.00862137477522365	0.0708778973349093
Merged-chr4-135495698-4	chr4	135495602	135495802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030189)	promoter-TSS (NM_030189)	-285.0	NM_030189	78806.0	Mm.374844	NM_030189	ENSMUSG00000028801	Stpg1	4930403G18Rik|4930555I21Rik|Mapo2	sperm tail PG rich repeat containing 1	protein-coding	5.55625788442516	5.46621525678126	5.21042161133068	5.27016555390368	5.81731765483409	6.0464125662753	5.75480756554514	5.91161441997315	0.854115661572931	0.00131761797793496	0.0168227318477906
Merged-chr8-94810190-4	chr8	94810081	94810281	+	920.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011332)	promoter-TSS (NM_011332)	-272.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	4.47016585816217	4.3263549326168	4.85509383048462	4.4576030994613	4.74034581005011	4.69007817563466	4.86373888354798	4.67433156922572	0.457501198445357	0.201439577705835	0.503839612816206
Merged-chr6-83637319-4	chr6	83637183	83637383	+	872.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18833.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	4.14593960566926	3.89145055487539	4.53613787040837	4.39342769111033	3.745550048613	3.84024416483841	3.8800198508387	4.35364109287423	-0.759744587065299	0.107496003935225	0.361596709531563
Merged-chr15-58595006-3	chr15	58594883	58595083	+	931.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	179515.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	3.87323665745639	4.03396959479451	4.40724572508209	4.55646882914854	3.82121130220409	3.68546606178033	4.14947389103962	3.97720498090738	-0.894705504006979	0.0594913851776987	0.257113428866919
Merged-chr4-53133624-4	chr4	53133524	53133724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 2 of 49)	intron (NM_013454, intron 2 of 49)	26271.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	6.72480869182695	6.63726761945545	6.58671575467178	6.24968129869074	6.15243560535669	5.85870267911805	6.11867623457948	5.99079808087297	-0.764075482194411	0.00185193718648508	0.0220463460588164
Merged-chr1-54832882-3	chr1	54832721	54832921	+	728.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	(GGGA)n|Simple_repeat|Simple_repeat	93566.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	3.33523574127963	3.06481882185807	3.17300160365129	3.19677873344943	3.28947358031691	3.22367006732539	2.97761272783367	2.98540586349097	-0.241984055741067	0.672642297405151	0.865286020512565
Merged-chr11-94401347-1	chr11	94401247	94401447	+	586.0	f0_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-8371.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	3.12251422210332	3.60537043771641	3.40144809741639	3.14713412181397	2.86020172318736	3.03272893149441	3.33598208459871	2.84742250820802	-1.18673679399568	0.0612835323068504	0.261955521065466
Merged-chr11-113865867-1	chr11	113865767	113865967	+	543.0	f0_balb.idr	intron (NM_172800, intron 12 of 44)	intron (NM_172800, intron 12 of 44)	-114052.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	3.05124849219046	3.1316934942785	3.05164012261264	3.10517376627675	2.90111483178766	2.97215197145422	2.92163902184046	2.86546123537303	-0.75399198062461	0.199144990266618	0.500934419273691
Merged-chr11-5505996-4	chr11	5505910	5506110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14631.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	6.63422111613319	6.67946887297354	6.89542491211231	6.97349292216017	6.73971438612747	6.74699146906615	6.97226919007159	6.89054199763803	0.0339876718941616	0.869908020526568	0.951154134365514
Merged-chr4-70265401-1	chr4	70265301	70265501	+	761.0	f0_balb.idr	intron (NM_001313762, intron 21 of 33)	intron (NM_001313762, intron 21 of 33)	145034.0	NM_001313762	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	3.04903958775329	3.35758868245209	3.72756996775895	3.54455979520058	3.50585287983722	3.42949280425456	3.30472304685472	3.48460789626986	-0.0374939235611663	0.946192225401324	0.980814540550536
Merged-chr18-50038539-4	chr18	50038447	50038647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360935, intron 1 of 1)	intron (NM_001360935, intron 1 of 1)	7563.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	5.63379911639885	5.57567949981793	5.75980037464162	5.92000560277066	5.72898978776019	5.4862865960619	5.84353154001307	5.52119559759095	-0.139254095969099	0.608027578738357	0.83032239482552
Merged-chr1-87187148-4	chr1	87187054	87187254	+	942.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027084, exon 11 of 13)	exon (NM_027084, exon 11 of 13)	-3443.0	NM_021600	11447.0	Mm.2811	NM_021600	ENSMUSG00000026251	Chrnd	Achr-4|Acrd|L10076	cholinergic receptor, nicotinic, delta polypeptide	protein-coding	4.61356212963883	4.58240735638321	4.61430144087453	4.72695025038803	4.48732098965082	4.43582910418483	4.55367640418599	4.72293527903395	-0.199769550803462	0.570571927704823	0.810162536555677
Merged-chr16-32124537-4	chr16	32124457	32124657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24755.0	NM_025892	66994.0	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	6.39791412204761	7.04333337378344	5.84118991081076	6.50403717169313	6.81848754105747	6.57611548017712	6.45309864016393	6.4124007726207	0.0832317792319831	0.775527019388214	0.912391634160948
Merged-chr7-100868737-4	chr7	100868640	100868840	+	905.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5327.0	NM_177073	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	4.43703450686448	4.21320061554178	4.81137467866432	4.69103362616106	4.20090638129834	4.47735577280246	4.57898465235494	4.5976538406922	-0.219011516857291	0.579936343531584	0.815517916470182
Merged-chr10-75326775-4	chr10	75326660	75326860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009630, intron 2 of 2)	MIR3|SINE|MIR	1902.0	NM_001331096	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	5.63342190358195	5.73909093283579	5.7439917172862	5.61349406154112	6.39999095568429	6.32011809266357	6.24075875677527	5.93427028504046	0.889250302674941	0.000303691598846719	0.0051267152060673
Merged-chr14-21981643-4	chr14	21981529	21981729	+	891.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7972.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	3.97810514389623	4.17057683833505	4.03222374053148	4.14537565347048	4.46691502328882	3.98748884415387	4.55738777610399	4.46994525503171	0.739625972281774	0.0710850666176812	0.285968256816404
Merged-chr4-19867764-4	chr4	19867675	19867875	+	855.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49048.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	3.91895718995431	3.83464811530642	4.5642527266169	4.72411605284541	4.53504348770845	4.2647812731897	4.3489843559433	4.32326935158587	0.0982113974622797	0.835832687196761	0.937525731479361
Merged-chr6-54058941-4	chr6	54058860	54059060	+	988.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	19028.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	5.34800526331804	4.90661457884286	5.13833837857365	5.56963104880565	5.25950266144999	5.02446470162981	5.11325714560824	5.03275964136423	-0.30440440801308	0.354933185448229	0.661579026385505
Merged-chr18-66410642-4	chr18	66410539	66410739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47965.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	5.83132224739494	5.78570844320166	5.59353391678911	6.10665381456997	5.81384618152337	6.16574732795652	5.82651847987959	6.237350276401	0.248748100291647	0.362882079696857	0.668104382989125
Merged-chr12-69361497-4	chr12	69361386	69361586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4310.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	8.71030108637989	8.88179004602446	8.97403086553319	7.86595002652127	8.69733723006914	9.13498405228001	8.75494822837554	8.89684118362054	0.261996959742384	0.275339465073609	0.587094475599858
Merged-chr17-33684826-4	chr17	33684741	33684941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145486)	TTS (NM_145486)	617.0	NM_001109913	76936.0	Mm.311439	NM_029804	ENSMUSG00000059208	Hnrnpm	2610023M21Rik|AA409009|Hnrpm|mKIAA4193	heterogeneous nuclear ribonucleoprotein M	protein-coding	5.57222475465909	5.55183322803775	5.73135149329864	5.59049276461004	5.70055250067026	6.00057618505717	5.65204828891446	6.05257366510949	0.405188294767372	0.123165705015283	0.389134628312082
Merged-chr16-97478836-4	chr16	97478747	97478947	+	969.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020622, intron 3 of 7)	intron (NM_020622, intron 3 of 7)	-15941.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	4.87835715579786	4.94272447447246	5.05488941314776	5.12376362678657	5.15672103585485	4.85472122607846	5.29331397738371	4.75781931533479	0.0573285252723517	0.861925687440173	0.947901186692584
Merged-chr15-74922466-4	chr15	74922370	74922570	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32581.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	4.54684976444212	5.13193744921194	5.06619170200046	5.14596061500283	5.18123299676343	5.17228012020901	4.86717265129163	5.12671877307707	0.168456549819533	0.616988454356592	0.835291303503194
Merged-chr1-51931511-3	chr1	51931437	51931637	+	769.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15559.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	3.36632943194642	3.31419884196578	3.30034611789191	3.33467649769953	3.90494483136569	3.92730301242287	3.53441824161158	4.01521822314968	1.66230833696111	0.000751266912554683	0.0107116483032923
Merged-chr3-135212480-4	chr3	135212350	135212550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173762)	promoter-TSS (NM_173762)	-113.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	7.45098116480115	7.2619646844672	7.3855997244371	7.37815776533892	7.23533720160156	7.32673179454072	7.33913733656548	7.1206325012317	-0.152148959788817	0.392987948063899	0.692234134852143
Merged-chr15-81804881-1	chr15	81804781	81804981	+	577.0	f0_balb.idr	intron (NM_153484, intron 1 of 3)	intron (NM_153484, intron 1 of 3)	2208.0	NM_153484	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	3.44948967798011	3.57585764525812	3.6714255600463	3.46501932986882	3.70652203852731	3.73678564941714	3.55155095379356	3.71912492392773	0.454330766496922	0.335599053220285	0.645927430703489
Merged-chr3-51648542-4	chr3	51648485	51648685	+	949.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12594.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	4.0142989420976	4.03851422355693	3.38637205542558	3.9125511041446	4.13783511261824	3.99227786848003	3.99714154715109	3.70703702587876	0.291726880744351	0.553692194385642	0.800354486026964
Merged-chr2-6450899-4	chr2	6450813	6451013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98177.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	5.80556632052838	5.89295127914923	6.37292185942936	6.09655511342569	5.90028292322764	5.5858303958028	5.98044186377578	5.69981526614644	-0.404439234077897	0.132928639783761	0.406097877964367
Merged-chr17-47646869-3	chr17	47646791	47646991	+	950.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198421, intron 1 of 6)	B3|SINE|B2	16201.0	NM_198421	224836.0	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	3.82291414503691	4.05799225514674	3.60421483822208	3.98284042622267	3.98676244458565	3.65925200805647	3.59137563173138	3.91815368350617	-0.224591543907187	0.639308079231978	0.847559309975212
Merged-chr19-37436642-4	chr19	37436524	37436724	+	984.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008245, intron 1 of 3)	intron (NM_008245, intron 1 of 3)	1783.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	4.85605256330074	5.48682982440023	5.4930436825161	5.35679436091988	4.90943768426314	5.15223384073345	5.15723063248987	5.17915992601397	-0.427181069482571	0.184391649809374	0.481798343290737
Merged-chr11-94410078-3	chr11	94409975	94410175	+	749.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009783, intron 35 of 35)	intron (NM_009783, intron 35 of 35)	-17099.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	3.20793592529169	3.29940839162377	3.37955869939641	3.35098937200977	3.02374356398884	3.32038613399196	3.13539801709033	3.52827604476612	-0.191058669910646	0.731379723612668	0.893597464662159
Merged-chr6-148478771-3	chr6	148478682	148478882	+	800.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34430.0	NM_001347518	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	3.56762686819046	3.53418325936488	3.51139642300639	3.68605589520769	3.54675341410039	3.62772234832774	4.04652770216663	3.38851239353658	0.28630400249684	0.573446686785382	0.811885495065
Merged-chr7-29769904-4	chr7	29769786	29769986	+	990.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023750, intron 1 of 4)	intron (NM_023750, intron 1 of 4)	1334.0	NM_023750	74352.0	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	4.92544096907808	5.1656649485875	5.25595542021019	5.06679982745339	4.99495545182149	4.98653703888722	5.0439404240971	5.36315592931109	-0.00615156990795878	0.984293058486495	0.994294815860951
Merged-chr13-8871789-3	chr13	8871694	8871894	+	727.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172445)	promoter-TSS (NM_172445)	-58.0	NM_001039388	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	3.93058971623552	3.7317176181282	3.97737766792224	3.84394357310485	3.66170526774635	3.9540376685119	3.71321324217138	3.92879395295426	-0.163202511842853	0.717086811139199	0.886892011087159
Merged-chr17-70968371-4	chr17	70968257	70968457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22159.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	4.89507538243576	5.1730711599663	5.07633649159473	5.09826906051604	5.10041741780731	5.40600817285846	4.9474000901946	5.23076530352062	0.20173547706973	0.515069721392847	0.777349780527563
Merged-chr15-6587024-4	chr15	6586914	6587114	+	897.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	7167.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	4.41223688017688	4.02240428025194	4.07981707006295	4.60281371285044	4.60913444710689	4.40818963897249	4.51161404456589	4.45134309411229	0.413202443428514	0.315113257256675	0.62702878136683
Merged-chr11-118242854-4	chr11	118242737	118242937	+	817.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	5755.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	4.01151256659058	3.57634015197375	3.76186727610879	3.87253806935332	4.13560634136203	3.88206229970865	3.69149479054163	4.21819336191347	0.515493897400677	0.268482152893388	0.580131084080006
Merged-chr10-127313025-4	chr10	127312928	127313128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1242.0	NM_001171582	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	6.10628164088747	5.85578874360418	6.02372025878778	6.16102309040823	6.37766829576456	5.88487570254737	5.83280093069091	6.23705165407446	0.107358005238986	0.679215494652515	0.868329272937217
Merged-chr15-75086839-4	chr15	75086765	75086965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25072.0	NM_001357693	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	8.31082244887912	7.98961227190273	8.88012540941994	6.96802149685305	7.7359760831621	8.24672602421245	7.82350177634545	9.00780725634173	0.123264663898319	0.834875758135234	0.937120489305156
Merged-chr5-132426073-3	chr5	132425970	132426170	+	944.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177047, intron 1 of 19)	ORR1E|LTR|ERVL-MaLR	116273.0	NM_177047	319974.0	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	4.70057664389959	4.44114179736297	4.40426117450306	4.82674313147711	3.12340546653373	3.44193577792828	3.38386641467781	3.39340287016887	-5.00083064630704	3.60026717325348e-10	2.51979761184866e-08
Merged-chr6-39538430-4	chr6	39538337	39538537	+	968.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172477, intron 1 of 18)	intron (NM_172477, intron 1 of 18)	19397.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	4.95379499892351	4.93868365089329	5.26164160585177	5.29638871368023	5.00718881357431	4.68370800493025	4.96468672289148	4.44862637441528	-0.641866072219819	0.0693198249670638	0.281553394067301
Merged-chr13-59003443-4	chr13	59003349	59003549	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	195752.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	4.34747168457439	3.59023010074448	4.1835844418152	4.34625129140636	3.92042756201658	3.83321813799986	4.16468352885951	4.30617809132964	-0.223520971918363	0.643569309929635	0.849787035051413
Merged-chr12-59032287-3	chr12	59032170	59032370	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	18879.0	NM_025656	66603.0	Mm.35353	NM_025656	ENSMUSG00000060121	Gemin2	Sip1|gemin-2	gem nuclear organelle associated protein 2	protein-coding	4.5013293149151	4.85528971305974	4.19848231133874	4.39815858856747	3.87380813898489	4.22389216710983	4.51830979847735	4.09459442626054	-0.761621007624973	0.0820649975122301	0.31103857603424
Merged-chr19-3908087-4	chr19	3908002	3908202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136091)	promoter-TSS (NM_001136091)	-969.0	NM_001136091	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	7.79034159918834	7.84730179255035	7.3238437620492	7.65221341127423	7.49111130648226	7.71159577425365	7.44069621835069	7.77883584432621	-0.0795998244831216	0.684074689434754	0.870552676808917
Merged-chr9-120926407-3	chr9	120926308	120926508	+	872.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040753, intron 2 of 2)	intron (NR_040753, intron 2 of 2)	4394.0	NR_040753	78060.0	Mm.463884	NR_040753	ENSMUSG00000086365	4930593C16Rik	-	RIKEN cDNA 4930593C16 gene	ncRNA	3.95527877028466	4.17020223284452	3.85503957082671	3.87071328002399	4.1065144623398	3.80589819818775	3.93917457842955	3.90418586238544	-0.0376332474281999	0.931561722486989	0.975349664377662
Merged-chr13-40940256-1	chr13	40940156	40940356	+	738.0	f0_balb.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	22622.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	2.98998576014417	3.07441656525075	3.15566898108012	3.36219842979448	2.60112238433134	2.60202875206679	2.65108761398837	2.92869657824181	-2.28042089621636	0.00159108145841344	0.0195767652771668
Merged-chr5-138158057-4	chr5	138157965	138158165	+	826.016663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2321.0	NM_019747	56314.0	Mm.19274	NM_019747	ENSMUSG00000037007	Zfp113	4732456B05Rik|mKIAA4229	zinc finger protein 113	protein-coding	3.90855543544404	3.81460888590685	4.47560529148578	4.2361857598567	4.18430777000903	3.97506239089862	4.09378796942284	4.24234280983823	-0.0209474527441312	0.962329981958124	0.986517687358511
Merged-chr15-96593291-4	chr15	96593250	96593450	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166456, intron 4 of 15)	intron (NM_001166456, intron 4 of 15)	48612.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	4.59230222820583	4.96441324399591	4.26180924850056	4.49728271530978	5.03656090086033	4.68335067502979	4.76387733455034	4.78363200526526	0.478821899095675	0.199274772071856	0.501101497961657
Merged-chr10-62132810-4	chr10	62132717	62132917	+	876.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009719)	promoter-TSS (NM_009719)	-273.0	NM_009719	11925.0	Mm.57236	NM_009719	ENSMUSG00000044312	Neurog3	Atoh5|Math4B|bHLHa7|ngn3	neurogenin 3	protein-coding	4.40457482566441	4.25783146041223	4.31835045672012	4.65072382519276	4.10888543795689	4.35234995503869	4.6800763038676	4.22262637767271	-0.179539785010033	0.661069463642918	0.859233242450522
Merged-chr2-150656288-2	chr2	150656188	150656388	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080575, intron 2 of 13)	intron (NM_080575, intron 2 of 13)	-11206.0	NR_040331	109344.0	Mm.440012	NR_040331	ENSMUSG00000087406	E130215H24Rik	-	RIKEN cDNA E130215H24 gene	ncRNA	3.19011314149748	3.08028991027687	3.13058325172571	3.60990821733134	2.91239618311548	2.9678200364389	2.99258133311192	3.54360082160007	-0.554632020687455	0.389464842999224	0.689744795214979
Merged-chr5-53997084-4	chr5	53996980	53997180	+	992.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1443.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	4.37702727747675	3.98699923528488	4.60825742724686	4.41007330760694	4.52467669133433	3.99225247643825	4.58592004475446	4.14508013423085	-0.0467882974444113	0.91413492377127	0.967873172075434
Merged-chr3-8991046-4	chr3	8990939	8991139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	13165.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	5.69109405797072	6.12498644321617	5.40329224472047	5.30761426728342	6.20483294651649	5.86815886694803	5.78550709406301	5.68805345142857	0.397051996443402	0.203993390082685	0.507166844960185
Merged-chr1-191179409-2	chr1	191179309	191179509	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007498, intron 1 of 3)	intron (NM_007498, intron 1 of 3)	3924.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	2.87903738791674	3.0129145716909	2.87934594811129	2.83001953344482	2.98267392660052	3.29646064551294	3.05828984208733	3.23427400730327	1.01498166109913	0.0791224140355035	0.304408102731371
Merged-chr6-17754626-3	chr6	17754534	17754734	+	928.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	5464.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	3.83170361578663	3.50324028259562	3.96318124770042	3.88532092762162	3.63275764353731	3.43867860335616	3.66941587929809	3.68201421035766	-0.61368761739572	0.209662616984501	0.514168095492496
Merged-chr15-77775710-3	chr15	77775604	77775804	+	778.266663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 21 of 40)	intron (NM_022410, intron 21 of 40)	-18694.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	3.09283931474667	3.0354856973616	2.96926155529548	2.69649860453775	3.13151803760405	3.14381805814877	3.13850258316767	3.20457547136384	0.868672643445418	0.138964850563407	0.414552151873265
Merged-chr16-30236599-4	chr16	30236520	30236720	+	879.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5B|DNA|hAT-Charlie	30912.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	3.96859483810632	3.92275949439097	3.65904136120634	3.38011547288358	4.03467414721088	3.77906495244309	3.70141526665129	4.17747811899295	0.559852334106547	0.25820350686633	0.570006300594682
Merged-chr14-54579844-3	chr14	54579731	54579931	+	840.505554	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2170.0	NM_010590	16475.0	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	3.70435008164469	4.12497288324226	3.70481990266653	3.46406619408761	4.43310682854702	4.48718135223146	4.48189504830814	4.31295790096233	1.75001034289762	7.58084982490608e-05	0.00160117896049552
Merged-chr7-141395028-4	chr7	141394928	141395128	+	965.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011528, intron 1 of 7)	intron (NM_011528, intron 1 of 7)	2868.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	4.83753692740622	5.09592949613565	4.75789420437008	4.76875872643692	5.23893738890018	5.25821819541	4.81555003221335	5.26157639195162	0.562177478297348	0.0840832452410604	0.315348524018915
Merged-chr6-113695929-4	chr6	113695831	113696031	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172161)	TTS (NM_172161)	-1119.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	4.09098464994416	4.60692015440728	4.3639233811414	3.97566531505105	4.37967627351572	4.1107692590213	4.34374277287334	4.03776351641778	-0.106909277482716	0.805563440839644	0.92521045259115
Merged-chr18-61090852-4	chr18	61090766	61090966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14706.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	5.53014363717013	5.30042317187514	5.32774182350294	5.66077004224049	5.74578199929039	5.47167386855257	5.63011637972114	5.38533064619697	0.16719385007092	0.559070287910986	0.803611286320753
Merged-chr2-131505910-4	chr2	131505805	131506005	+	879.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177840, intron 1 of 3)	intron (NM_001177840, intron 1 of 3)	14043.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	4.36894774704229	3.90599229830956	3.79588849167077	4.44535567034155	4.23056094310743	3.72365362661125	3.9484543045692	4.54541021137855	-0.0386370844206287	0.938647207200749	0.977759950372676
Merged-chr4-130896583-4	chr4	130896503	130896703	+	831.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16731.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	3.94944535025782	3.49435335419028	3.79210699204991	3.58864967252115	4.24805325080351	4.21693112052187	4.15716211413444	4.08825103191312	1.31348606559174	0.00265265953892914	0.0290393191820113
Merged-chr12-41275021-3	chr12	41274916	41275116	+	814.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	211041.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	3.42356216378456	3.46133236550786	3.96653197009433	4.1701065372022	3.254270216503	3.26763063002417	3.52725134280471	3.53922448475517	-1.30639352758804	0.022042797197349	0.136707977413708
Merged-chr11-102407091-1	chr11	102406991	102407191	+	1000.0	f0_balb.idr	intron (NM_026542, intron 1 of 11)	intron (NM_026542, intron 1 of 11)	426.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	4.11597485744946	4.48259181598583	4.21678400952388	4.3960640018669	4.29897718457455	4.56747752822226	4.29084093789807	4.51370631727421	0.228954530106524	0.555433606723632	0.801541008291732
Merged-chr16-35768545-4	chr16	35768418	35768618	+	981.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	intron (NM_153550, intron 1 of 8)	838.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	5.51285128441477	5.75579056246163	4.84332253405824	4.77921554529121	5.09529638415835	5.73386870411452	4.97637255822931	4.7540296947322	-0.17804731877498	0.668903975179389	0.863340847602282
Merged-chr11-3963838-7	chr11	3963676	3963876	+	984.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022889)	promoter-TSS (NM_022889)	-199.0	NM_022889	64934.0	Mm.28659	NM_022889	ENSMUSG00000020430	Pes1	-	pescadillo ribosomal biogenesis factor 1	protein-coding	4.54536345582877	4.31415410620175	4.58755358447695	4.3013785043761	4.60060298561195	4.72105369031697	4.85404165417837	4.99800795640772	0.798703720128711	0.0255418420537461	0.150712324922788
Merged-chr2-58167859-4	chr2	58167764	58167964	+	878.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045895, intron 2 of 3)	intron (NR_045895, intron 2 of 3)	3890.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	4.61541765883121	4.15179466527555	4.68817427446404	4.61626804260228	4.61558333207949	4.5457273441899	4.35231534813271	4.12319883819643	-0.240064551568161	0.55059946255225	0.798673593705145
Merged-chr2-120446603-3	chr2	120446500	120446700	+	956.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172672, intron 17 of 23)	intron (NM_172672, intron 17 of 23)	-16993.0	NM_001177799	12335.0	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	4.43411612236897	4.36751352923552	4.8872632205113	5.01348338654541	4.02891594406785	4.47205469608623	4.50137342628802	4.88385929073727	-0.46257070676904	0.287361189821027	0.599141220606077
Merged-chr2-145823007-4	chr2	145822929	145823129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	36913.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	5.83344084787754	6.08137406797628	6.41752049454233	6.43439615758886	6.1981672018582	5.82286094372341	6.38458275836368	5.77828082313483	-0.226075339157733	0.420619187439009	0.713388099239967
Merged-chr12-71114078-4	chr12	71113982	71114182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029227, intron 2 of 4)	intron (NM_029227, intron 2 of 4)	2654.0	NM_029227	75266.0	Mm.402075	NM_029227	ENSMUSG00000021078	Tomm20l	4930553D19Rik	translocase of outer mitochondrial membrane 20-like	protein-coding	6.07045726549335	5.97852952405955	5.69706573332992	6.28755499876543	6.0931842524822	5.8198180258038	5.91347044776155	5.87046839033528	-0.169939053505065	0.51849864394844	0.779547160714285
Merged-chr7-19094017-4	chr7	19093904	19094104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011383)	promoter-TSS (NM_011383)	-540.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	7.07582032670274	7.46235894327728	7.02640569896693	7.17066833473557	7.41416199207121	7.41678071642854	7.46711523977589	7.12074268846903	0.222613181126678	0.262662527540773	0.574445092878026
Merged-chr1-125430976-3	chr1	125430882	125431082	+	931.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205386, intron 2 of 12)	B1F1|SINE|Alu	4745.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	3.5660329876063	4.06150400560975	3.80187700942538	3.31331678878566	4.02088885959051	4.21765564884595	4.11411304204987	3.90329751108862	1.00799781933434	0.0406857251784571	0.203888823550815
Merged-chr3-105775884-3	chr3	105775746	105775946	+	698.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145541, intron 1 of 7)	MTA_Mm|LTR|ERVL-MaLR	25535.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	3.65226832385692	4.37488070932725	3.965202491974	2.61400366013548	3.8735508521775	3.71758697668161	3.63763838406623	4.09451003784364	-0.0194126570451705	0.988351899616782	0.9954423231665
Merged-chr2-116065763-2	chr2	116065666	116065866	+	683.75	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001159568)	promoter-TSS (NM_001159568)	-708.0	NM_010825	17536.0	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	3.54446556864423	3.7495567783619	3.60343670743147	3.76244035612458	3.88796033200023	3.88360688662731	3.69838192050614	3.81209708714636	0.434440412266222	0.342906750496774	0.6516462545027
Merged-chr16-35938947-4	chr16	35938856	35939056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013371)	promoter-TSS (NM_001013371)	71.0	NM_001013371	209200.0	Mm.390852	NM_001013371	ENSMUSG00000049502	Dtx3l	AU042200|BC023741	deltex 3-like, E3 ubiquitin ligase	protein-coding	5.67391379251769	5.66010732221149	5.33572846068086	5.61560823233328	5.79401705019705	5.3067514557095	5.80763984808917	5.59428320966424	0.115026594953469	0.682065346943226	0.869682098720609
Merged-chr17-71292120-3	chr17	71292042	71292242	+	973.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	18869.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	4.3170264836692	4.15669699360489	3.6673794668143	4.06958557610117	3.76967916455089	4.01124010887928	3.87285029857357	3.53959306288776	-0.743321021068175	0.121750774454604	0.386517032019279
Merged-chr6-31285428-4	chr6	31285289	31285489	+	931.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040261, intron 3 of 4)	L2c|LINE|L2	65038.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	4.64510416299698	4.53972461928314	4.56967858845758	4.36715212722199	4.58728460298912	4.22825402655561	4.69496160023318	4.48576052486689	-0.0149385631036038	0.968043637704281	0.98865348920078
Merged-chr14-16379518-4	chr14	16379416	16379616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009409, intron 1 of 35)	L1M4|LINE|L1	14310.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	5.33195948343949	5.27528415838216	5.55922905033096	5.40721275912366	5.46959999004358	5.59692041364679	5.24353505432775	5.72444813518357	0.21134002860739	0.457390283554132	0.740504919348528
Merged-chr10-70199980-4	chr10	70199882	70200082	+	887.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-4682.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	4.27623949785958	4.1769589629004	4.14038196033251	4.43130067848469	4.25216866546062	4.26479908472229	4.02512133916005	4.31658022245515	-0.135175444182304	0.735976175246797	0.895751244963882
Merged-chr10-4174956-3	chr10	4174845	4175045	+	896.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38175.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	3.92233755743065	4.07583181607388	4.20977796892503	4.46436213147999	2.98088543683434	3.16955647740219	3.27693723535153	3.35730255477664	-3.96081791527768	2.20133958853322e-08	1.09191045694917e-06
Merged-chr10-94277932-1	chr10	94277832	94278032	+	611.5	f0_balb.idr	Intergenic	Intergenic	20771.0	NR_033209	215472.0	Mm.255656	NM_174999	ENSMUSG00000053420	Gm4792	E130012K09|EG215472	predicted gene 4792	ncRNA	2.9203278807666	2.99604502518364	3.22899732492918	2.81551626183566	2.36839230680761	2.84388116205532	2.43090015748347	2.43524056397272	-2.63159893390665	0.00163746921810357	0.0200263610782463
Merged-chr17-25320833-4	chr17	25320742	25320942	+	911.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053260, intron 3 of 5)	intron (NM_053260, intron 3 of 5)	2188.0	NM_053260	114662.0	Mm.207082	NM_053260	ENSMUSG00000034039	Prss29	D19363|Isp2|mISP-2	protease, serine 29	protein-coding	5.10658265337784	4.95228638326227	5.16605574451664	5.34912664214877	4.45343017585178	4.68645820527955	4.48523614716778	4.72192097760591	-1.19372701376868	0.000496143594138861	0.00766717431333261
Merged-chr19-47890924-5	chr19	47890816	47891016	+	887.6333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25122.0	NM_026619	68214.0	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	4.46044797034433	4.11570021656553	4.46115746781689	4.40379409240768	4.48717842699721	4.50616502228408	4.51848209495011	4.23768637277302	0.178325207455441	0.63887428323149	0.847409779354821
Merged-chr1-175691884-1	chr1	175691784	175691984	+	846.3333130000001	f0_balb.idr	intron (NM_010098, intron 1 of 3)	intron (NM_010098, intron 1 of 3)	748.0	NM_010098	13603.0	Mm.32744	NM_010098	ENSMUSG00000026525	Opn3	ERO|Ecpn	opsin 3	protein-coding	3.77434294692575	3.67071343303177	3.86859072321124	3.77072011189013	3.67823545736059	3.55859299405497	3.55079189856686	3.61807196599483	-0.512372352356085	0.274028309753868	0.585772750915087
Merged-chr13-5845836-4	chr13	5845731	5845931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12261.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	6.95472484834721	6.83599389229159	6.40991865628035	7.10839621540014	6.77110291643164	6.69660140821339	6.83189939534901	6.51430045940165	-0.219054853189747	0.346095460192559	0.654364893116659
Merged-chr10-7064310-4	chr10	7064215	7064415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41130.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	7.20302848142672	7.2270118238169	7.46823623908036	7.79183168547218	7.05965379563764	6.82457484533352	7.32661328005266	7.51677966965074	-0.333382273882241	0.158246604170436	0.445134872270402
Merged-chr2-61578583-4	chr2	61578489	61578689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011529)	promoter-TSS (NM_011529)	3.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	7.46650502609604	7.73418917590216	7.81940493816397	6.97978761007455	7.86209603854381	7.89010820614894	7.5146874138043	7.4626185041487	0.221750476040908	0.348723428717458	0.656400500665871
Merged-chr4-34960301-1	chr4	34960201	34960401	+	602.0	f0_balb.idr	intron (NM_178061, intron 3 of 3)	intron (NM_178061, intron 3 of 3)	-48820.0	NR_040652	73696.0	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	3.61763386318683	3.38775923487226	3.7157684714103	3.65103844329036	3.60598807426106	3.31458669663144	3.32443530248405	3.6657264272917	-0.347464415381526	0.499670441285541	0.768441125779794
Merged-chr10-24931681-3	chr10	24931583	24931783	+	643.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4213.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	3.61807173623652	3.58289295185515	3.77476007932749	3.377621145812	3.82892575270015	4.07431686463895	3.60452820907515	3.61659467386041	0.660657837166967	0.177371371072523	0.472726881400799
Merged-chr2-30772963-7	chr2	30772863	30773063	+	945.8095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28774.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	3.89803029851509	4.16309679982601	4.05150591150312	4.162450515224	4.00782818475473	4.31304375589174	4.03442825515278	4.14215220465784	0.109893966102895	0.791493355823552	0.919138995238761
Merged-chr16-62814023-3	chr16	62813910	62814110	+	900.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026588)	promoter-TSS (NM_026588)	-666.0	NM_026588	68159.0	Mm.386793	NM_026588	ENSMUSG00000047854	Stx19	A030009B12Rik	syntaxin 19	protein-coding	3.95250453687179	3.91502182784877	3.80431524915907	4.13616233105054	3.68275268943428	3.75391313930221	4.06758307963362	3.69275567266197	-0.463529236688985	0.313818024340246	0.625783310940766
Merged-chr14-47360631-1	chr14	47360531	47360731	+	858.0	f0_balb.idr	Intergenic	Intergenic	-13229.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	3.70910784543269	3.70511527629876	4.1174138698393	4.16049450449754	3.31921102741725	3.65647184690188	3.58463537737786	3.6531006751702	-1.22369362842757	0.0160407985794852	0.109864334672351
Merged-chr4-103321905-5	chr4	103321708	103321908	+	904.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025909, exon 3 of 9)	exon (NM_025909, exon 3 of 9)	7962.0	NM_025909	67013.0	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	3.822339532703	3.90752894457852	3.61340750232688	3.86871523262962	3.69552018850251	3.60902103079642	3.70752701504711	3.82065079082682	-0.310478189321763	0.500379068135077	0.768850577358824
Merged-chr14-9468847-4	chr14	9468753	9468953	+	925.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-415242.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	4.64440048130711	4.33166480493724	4.47252055194172	4.94109672481642	5.03151613770471	4.69442184325414	4.94042711087301	4.68186886107445	0.442586217029808	0.243290538553521	0.554291570440467
Merged-chr6-72109714-4	chr6	72109618	72109818	+	924.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	12110.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	4.90241892334161	4.5917515248288	4.4685973560362	4.72167101787114	4.58841326289665	4.25169429884023	4.3134045033842	4.58912830240978	-0.510123804799342	0.175745746072697	0.470579184430218
Merged-chr15-89400849-3	chr15	89400733	89400933	+	887.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162880, intron 1 of 2)	MTE-int|LTR|ERVL-MaLR	9430.0	NM_001162882	75459.0	Mm.45462	NM_001162880	ENSMUSG00000078938	Syce3	1700007E06Rik|TSEG-2|TSEG2	synaptonemal complex central element protein 3	protein-coding	3.85687614861625	3.66582977287356	3.95456636988549	4.02428008410888	3.82527952518457	3.81469360982682	4.02664781797952	3.85520591780708	-0.0256180958127399	0.954326438627571	0.98373809489276
Merged-chr11-115603894-4	chr11	115603796	115603996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025305)	promoter-TSS (NM_025305)	20.0	NM_001252067	260302.0	Mm.119479	NM_173048	ENSMUSG00000020740	Gga3	C230037M19Rik|mKIAA0154	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding	6.71492131111473	6.94972226837199	6.12269247002125	6.3990674560422	6.8235496593765	7.16955188417615	6.80793451883241	6.8512103463104	0.477326591791117	0.0555688693763292	0.246756147489906
Merged-chr3-79629506-2	chr3	79629396	79629596	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_025794)	promoter-TSS (NM_025794)	417.0	NM_029482	75939.0	Mm.221520	NM_029482	ENSMUSG00000027811	4930579G24Rik	-	RIKEN cDNA 4930579G24 gene	protein-coding	5.11152121168655	5.09661661761359	5.07996168597207	4.80451548931132	5.07423445967791	4.88049871138509	5.2367386852714	5.17126342305914	0.164367392557657	0.603432822554803	0.82809560771388
Merged-chr9-90040515-4	chr9	90040413	90040613	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-13754.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	5.0994716334569	4.94811045201685	5.18936562189755	5.52421840620368	4.54611044046821	4.45508485422817	4.72597196131439	4.7849259028961	-1.19757657825347	0.000697799917768665	0.0101117060966726
Merged-chr13-5635192-4	chr13	5635096	5635296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	222896.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	5.07975940926061	5.41138563761831	5.51021269812215	4.88711048822108	5.42585334350966	5.51780696804052	5.40228570455671	5.50631079773641	0.419939810151665	0.175083300355335	0.469830508425727
Merged-chr3-95229994-4	chr3	95229928	95230128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038708, intron 1 of 4)	intron (NM_001038708, intron 1 of 4)	1085.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	4.78613581835148	5.1212092451284	4.94192151176349	5.2499829765504	5.04266717985368	5.18639366476901	5.0555025488914	5.07677820427462	0.0599035949777354	0.851170945210075	0.943894442930937
Merged-chr12-12265212-3	chr12	12265086	12265286	+	898.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	3047.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	3.29586790274349	3.63049838996522	3.29627548931434	3.05126375327931	3.64094598874881	3.58482484098594	3.34359792688933	3.35445324308413	0.556710055940876	0.309966997454531	0.622114309925992
Merged-chr17-6272180-3	chr17	6272078	6272278	+	981.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033178, intron 1 of 16)	intron (NM_001033178, intron 1 of 16)	1708.0	NM_001033178	77106.0	Mm.381893	NM_001033178	ENSMUSG00000038141	Tmem181a	5930418K15Rik|C76977|Gpr178|Tmem181|mKIAA1423	transmembrane protein 181A	protein-coding	2.94630578586095	2.86192576615479	2.94661401882765	2.34668513127523	4.55074120547571	4.03426600085612	3.83342767759459	4.29273004098423	8.09362663227983	9.93102681952724e-17	2.1219480392214e-14
Merged-chr8-88274290-3	chr8	88274198	88274398	+	871.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007406, intron 1 of 27)	intron (NM_007406, intron 1 of 27)	1895.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	4.01577015450671	4.43587359620681	4.06444641557869	3.83380606434875	3.867478531814	3.80433461072398	4.26076265182868	4.06196850308819	-0.242758332056241	0.59682827294645	0.824985875654518
Merged-chr10-122570055-4	chr10	122570001	122570201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040616)	promoter-TSS (NR_040616)	-210.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	7.22477948090904	7.57994846513864	7.59607851016235	7.4971388395255	7.8065833242564	7.49342443528255	7.65827974264316	7.59086568279249	0.216165592706575	0.239457394271358	0.549870563823627
Merged-chr10-82900307-4	chr10	82900199	82900399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	33673.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	6.91803603632263	6.85311733580378	7.85784447791885	7.47385625829843	7.86756115560121	7.60811775527286	8.26237155093597	7.94818856945775	0.783836851314746	0.00294924757606079	0.0315581018064389
Merged-chr8-4404415-3	chr8	4404322	4404522	+	960.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	54834.0	NM_009138	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	4.26979189955345	4.21156744112806	4.75548253014553	4.59272337286435	3.78685977876853	4.20103020385063	4.37961217072815	4.17368877856951	-0.817415061563653	0.0605670064676711	0.260052547978977
Merged-chr13-104178381-4	chr13	104178270	104178470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361539)	promoter-TSS (NM_001361539)	96.0	NM_025879	66975.0	Mm.272541	NM_025879	ENSMUSG00000021711	Trappc13	2410002O22Rik|2610524F24Rik|AI451892|AU017229	trafficking protein particle complex 13	protein-coding	4.99164785238151	5.13494626265908	5.2486430647901	5.16121259940442	5.16320876246169	4.80775693847953	5.19347325677736	4.98913237569059	-0.158703738348455	0.60998521760454	0.831398279446287
Merged-chr13-113617433-4	chr13	113617324	113617524	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_130796, exon 1 of 2)	exon (NM_130796, exon 1 of 2)	1140.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	5.2211614281427	5.87603687200368	6.07393638256022	5.61269313478905	6.02154975430224	6.16611880792863	6.17499132193361	6.20251255827431	0.652175856845652	0.0193219189577874	0.125005617089521
Merged-chr5-136085016-4	chr5	136084915	136085115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	1099.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	6.56943703875769	6.81526329101536	6.39585648051951	6.61901712178786	6.70335801399607	6.84096754480125	6.5370617488786	6.81645848915116	0.164098556200607	0.44319371462647	0.729794230634283
Merged-chr17-56958051-4	chr17	56957971	56958171	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175731, intron 4 of 5)	intron (NM_175731, intron 4 of 5)	-22683.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	4.29108483806081	4.03422128379054	3.88986939318908	4.03311605037347	4.11733667627937	4.01117235095433	3.8742388857158	3.7784748998148	-0.292084095807782	0.504899345296011	0.771119418797875
Merged-chr8-69749699-4	chr8	69749593	69749793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001200023, intron 1 of 3)	CpG	269.0	NM_001200023	620419.0	Mm.460423	NM_001200023	ENSMUSG00000092260	Zfp963	-	zinc finger protein 963	protein-coding	7.38155104232042	7.30887743252902	7.20749471311404	7.37407704994581	7.65137437361628	7.79260377378201	7.83703976278581	7.69235829588601	0.554024099362359	0.00117824271624182	0.0153432341667233
Merged-chr18-75370591-2	chr18	75370491	75370691	+	990.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042660, intron 1 of 3)	intron (NM_001042660, intron 1 of 3)	3226.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	3.9258331788003	3.49863894660712	3.88249059241257	3.34670215460155	3.5576183111612	4.00581538355949	3.45010862646294	3.39793228110642	-0.171952403846694	0.751965474175166	0.902329068825205
Merged-chr14-51984919-3	chr14	51984895	51985095	+	776.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145921, intron 1 of 23)	CpG	162.0	NM_198249	268739.0	Mm.9239	NM_198249	ENSMUSG00000004562	Arhgef40	E130112L23Rik|Gm669|Solo	Rho guanine nucleotide exchange factor (GEF) 40	protein-coding	3.20390194685993	3.26841826186579	3.2584975985605	3.09910675495769	3.31836620643925	2.9269626430387	3.01660471073886	2.89191276077472	-0.572118187299439	0.342030593185917	0.650998625354451
Merged-chr11-69118895-4	chr11	69118810	69119010	+	891.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1543.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	4.2791072286104	4.37115621299935	3.76755062501244	4.02363957259012	4.37978482307124	4.2719886704746	3.87202921158381	4.39787328443092	0.303038127631163	0.496678209890906	0.766611551344974
Merged-chr3-121570879-4	chr3	121570740	121570940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38496.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	7.34952230600808	7.57486245123788	7.21194981108484	6.87619518393237	7.37367123558367	7.76604281727899	7.23085634240047	7.26210774689838	0.207463444841023	0.367186478609304	0.671582248398685
Merged-chr1-138458297-4	chr1	138458176	138458376	+	948.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161481.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	5.00370673557232	5.09746100045122	5.34614472532902	5.46873215611839	4.77141547996432	4.77282510248715	5.11440172019006	5.31491637423813	-0.464255209891668	0.170820234625032	0.464004933466155
Merged-chr7-101851919-4	chr7	101851813	101852013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303239, intron 2 of 5)	intron (NM_001303239, intron 2 of 5)	5277.0	NM_001303239	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	5.18545167591792	5.22828446701048	5.45651484079598	5.22012477509188	5.57138222492396	5.39461850203889	5.37427806201128	5.30987314062444	0.274818630784375	0.333449056764539	0.644188029374994
Merged-chr13-20493888-2	chr13	20493781	20493981	+	624.0	f0_balb.idr|f0_c57.idr	intron (NM_198093, intron 1 of 6)	intron (NM_198093, intron 1 of 6)	20891.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.77404245440548	3.68165537632234	3.87531019006941	4.10514996396441	3.8970561226757	3.89334361126231	3.70672322125334	3.719060747702	-0.21258298244744	0.647426919751792	0.851667779256884
Merged-chr7-80403019-4	chr7	80402921	80403121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011046)	promoter-TSS (NM_011046)	-209.0	NM_011046	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	4.47354476159957	4.60895398071056	4.64261859726493	4.43895455339817	4.44354667207549	4.9621792008542	4.58115152480348	4.98256246667011	0.465475150588998	0.205899632499041	0.509711332440066
Merged-chr8-84984822-4	chr8	84984663	84984863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5832.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	6.93810001663957	6.57430572507282	7.41893721269875	7.37469598249575	6.95760227037023	7.08982431125461	7.22865356805967	6.85211480539291	-0.122615455260008	0.619254022122666	0.836426662841336
Merged-chr5-67394134-3	chr5	67394037	67394237	+	783.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164806, exon 5 of 5)	3' UTR (NM_001164806, exon 5 of 5)	33662.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	3.35834059898944	3.45814212481696	3.91825946438838	3.54318297230048	3.48862778716929	3.47316693878398	3.62846491212722	3.69158187179025	-0.036014149389302	0.943517942774154	0.97960330307221
Merged-chr7-98818745-4	chr7	98818641	98818841	+	982.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16371.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	5.10776490707031	5.1047558080981	5.10862266889504	5.16748560999308	5.2625701271538	5.37856115469594	4.94310946739024	5.37598778555639	0.231149371086711	0.441973133402685	0.728813816856128
Merged-chr6-52306075-4	chr6	52305975	52306175	+	876.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7423.0	NM_007966	14028.0	Mm.389754	NM_007966	ENSMUSG00000005503	Evx1	Evx-1	even-skipped homeobox 1	protein-coding	4.55286476993746	4.34794755577377	4.00459501302841	4.40451926820993	3.94744394215436	3.6948830401333	4.22542628308808	4.28486940410792	-0.723529938269599	0.107340083409228	0.361382260156614
Merged-chr13-58999292-4	chr13	58999178	58999378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	191581.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	4.03715397389831	4.13785888155087	4.08890670911626	4.45883980904659	4.5886181635286	4.40249925063501	4.16751621891633	3.98227291384036	0.258437719410359	0.553935209907799	0.800500121223594
Merged-chr5-115490089-6	chr5	115490050	115490250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5666.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	6.34351489571834	6.93594574008667	6.71771495748882	6.14782407853803	6.46671811514105	6.66371862932905	6.10892665150805	6.68455745074043	-0.0975838022155416	0.720837931217719	0.88846247810902
Merged-chr7-141131274-4	chr7	141131183	141131383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013782)	promoter-TSS (NM_013782)	-3.0	NM_013782	27388.0	Mm.293591	NM_013782	ENSMUSG00000025495	Ptdss2	AI481134|AI988017|PSS2	phosphatidylserine synthase 2	protein-coding	6.36896104129849	6.56961920380703	6.01802723434044	6.26894940107452	6.27482911741227	6.74538332469044	6.639683921269	6.46953335539034	0.31508351503118	0.192777536495021	0.492665240204621
Merged-chr16-30835938-3	chr16	30835838	30836038	+	915.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER77|LTR|ERVL	236215.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	3.87090297196409	4.54501239871688	4.08184715873399	3.18634311824831	4.29014353023583	4.55508449106847	4.15633483410018	3.86922987109182	0.531525996658507	0.345881997982871	0.654200694454941
Merged-chr9-66088682-2	chr9	66088582	66088782	+	986.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019727, intron 14 of 14)	intron (NM_019727, intron 14 of 14)	-18951.0	NM_001025612	382083.0	Mm.477103	NM_001025612	ENSMUSG00000039452	Snx22	Gm1120	sorting nexin 22	protein-coding	2.83617565463669	3.02123815571394	2.95224133979503	2.80951503220163	2.60614343828642	2.6708098706195	2.8264269945341	2.70793083517988	-0.99795574389737	0.124152636924053	0.390992275271539
Merged-chr16-13818697-4	chr16	13818616	13818816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010946)	promoter-TSS (NM_010946)	-535.0	NM_010946	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	7.5476690919357	7.46549117331765	7.20583695283584	7.55043961609766	7.87672888149306	7.63212311875235	8.08354755423851	7.56181250576802	0.464984928944888	0.0183762012579262	0.121043830218206
Merged-chr8-90961781-4	chr8	90961667	90961867	+	831.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 4 of 39)	intron (NM_177224, intron 4 of 39)	29518.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	4.94856021975487	4.63244274118419	4.84867853998232	5.13207729999642	4.56182691851253	4.98516564934076	4.46779570280343	4.38917687904099	-0.622088769634527	0.0958710896761995	0.33914856578014
Merged-chr15-25984303-4	chr15	25984193	25984393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144523)	promoter-TSS (NM_144523)	-73.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	9.11863706262117	9.28218130522865	9.22095435571523	9.1157996496015	9.22548896012516	9.16628660498939	9.36585832990042	8.88419488837677	-0.0149414756418634	0.92483694471951	0.972242873959408
Merged-chr10-70097988-4	chr10	70097897	70098097	+	823.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111121, intron 1 of 8)	CpG	876.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	4.26063960926291	4.04307451297074	4.45705285125944	3.86112820670457	4.26333409185215	4.20460398133816	3.96175990408346	4.07702990855897	-0.0608432798801423	0.889397072869607	0.958519732455951
Merged-chr2-11441992-4	chr2	11441882	11442082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43482.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	7.47423810582445	7.859264491045	8.00492947016886	7.89521877664435	7.92184560282252	7.7212439696423	7.68209483821377	7.97980612512177	0.0109865821129068	0.953507750313804	0.983444766711298
Merged-chr6-73772136-3	chr6	73772035	73772235	+	826.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-301114.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	3.18230002221418	2.95673366042333	3.18278631578446	3.71037260640005	2.51175864738559	2.70042302747421	2.6648452481001	2.67066070849095	-3.74672946418587	2.77160957539747e-05	0.00067887267022442
Merged-chr11-83063351-4	chr11	83063250	83063450	+	893.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1762.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	4.53083991410732	4.07650866841908	4.2496646038845	4.19887492137388	4.33179239379857	4.18022302460663	4.03884833526336	4.49200362055021	0.0176056037943159	0.965697275963389	0.987903913620461
Merged-chr10-40347919-3	chr10	40347870	40348070	+	896.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1338.0	NM_001291817	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	3.91524703023262	3.62242866300667	4.0078791670199	3.51940067769235	3.91482804680272	4.21921162813544	3.63827920266342	3.7072828831896	0.338878514292415	0.490182058283573	0.762137805298524
Merged-chr15-88505266-3	chr15	88505162	88505362	+	938.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95040.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	3.16011821139149	3.06610037169526	3.01603011554821	3.18689280093306	3.73458481794949	3.74111464715534	3.7405492384152	3.51792826251603	1.95875112952686	0.000303503393387704	0.00512528304577542
Merged-chr13-119809123-4	chr13	119809047	119809247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-18025.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	6.95657102334926	7.03108888247596	6.95778535442666	7.36471430523859	7.21108230293816	7.0103208828312	7.28628785829211	7.12567857953643	0.0806727411879634	0.693329458662637	0.875305395019895
Merged-chr14-57395084-4	chr14	57394991	57395191	+	834.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030004, intron 1 of 7)	intron (NM_030004, intron 1 of 7)	3392.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	3.83255002216013	4.00998082421265	4.04481040113943	3.96625292065717	4.02641946566193	4.43681523040725	4.28866612166639	4.09030660292009	0.639446199974675	0.125230872865006	0.392747986414269
Merged-chr8-124845336-1	chr8	124845236	124845436	+	789.0	f0_balb.idr	intron (NM_025615, intron 2 of 6)	intron (NM_025615, intron 2 of 6)	17693.0	NM_025615	66523.0	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	3.12752368135222	3.19451944994475	3.01132676667473	3.48920888242624	2.76467515769246	2.92079342741342	2.73487238266094	2.94745662066195	-1.73220582992477	0.00795202960246887	0.0669139522669436
Merged-chr13-13590279-4	chr13	13590201	13590401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010748)	promoter-TSS (NM_010748)	-108.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	8.51788077839857	8.40663607978629	8.70317729115292	8.73712532882255	8.41538832544593	8.33452034706773	8.64690562396161	8.35960690750376	-0.197030667935052	0.235948594439548	0.545918160675954
Merged-chr6-90435370-3	chr6	90435258	90435458	+	874.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6878.0	NM_173775	243538.0	Mm.386876	NM_173775	ENSMUSG00000048794	Cfap100	AW048498|C030041G11Rik|C230069K22Rik|Ccdc37	cilia and flagella associated protein 100	protein-coding	3.27012675968403	2.93814167148283	3.21133538267295	3.45196011506403	3.32493343784114	3.38270821279477	3.3677211387275	3.32535734900597	0.381733047212871	0.497832320808967	0.767244922872393
Merged-chr15-44624997-3	chr15	44624904	44625104	+	819.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357690, intron 2 of 6)	B3|SINE|B2	5363.0	NM_019480	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	3.9003916267585	4.03153852840319	3.84943543080123	3.85614488799445	4.26021120426869	3.67382023196853	3.88486190418288	4.08591505478748	0.265875265855481	0.5561501450426	0.801835080198288
Merged-chr6-114874384-7	chr6	114874288	114874488	+	972.2958980000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	47433.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	4.07721999664933	4.23007197528044	4.12238449823194	3.78717061266408	3.94632990135836	3.89282203883844	3.81347695316719	4.07532149491451	-0.318483768350895	0.473324152552147	0.751120075233185
Merged-chr8-69271022-4	chr8	69270940	69271140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172491)	promoter-TSS (NM_172491)	-40.0	NM_172491	211135.0	Mm.294970	NM_172491	ENSMUSG00000079038	D130040H23Rik	-	RIKEN cDNA D130040H23 gene	protein-coding	7.05139401857135	7.23562210883606	7.0028450055046	7.13068482371587	7.19996481246842	7.01776555192755	7.08803597966075	7.02302753460745	-0.0302324192423108	0.871424505282231	0.951627503185851
Merged-chr2-6459681-4	chr2	6459497	6459697	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106861.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	3.90258908703204	4.37681976734073	4.3080662964283	4.46728598488759	4.11336752802022	4.24664962566022	4.28873791465261	4.5777709848828	0.0489489146832995	0.907676362094241	0.965746814189597
Merged-chr14-16248717-4	chr14	16248622	16248822	+	959.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362433)	promoter-TSS (NM_001362433)	454.0	NM_001359882	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	4.70939773160257	4.86307771746346	4.20406098395093	4.64308783549091	4.87044276956552	5.05761827922886	4.61003933986028	4.58736104645341	0.348122236051019	0.356977975545771	0.663238634370609
Merged-chr2-57102706-2	chr2	57102606	57102806	+	895.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	12332.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	3.05867323214941	3.55717920983195	3.48380777444638	3.11940628089548	3.17688717947038	3.5472259367828	3.46905426498365	3.37385172813621	0.269386043105638	0.631400708289753	0.843388211517721
Merged-chr13-4667023-4	chr13	4666972	4667172	+	766.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57908.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	3.6160961867054	3.6065550039489	3.33557931613117	3.36091870659011	3.7709551833868	3.62612680638263	3.44223049816738	3.5092052262578	0.395065792166597	0.430368854728366	0.720985330227602
Merged-chr6-37419764-4	chr6	37419679	37419879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	22369.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	5.80708427261237	5.94497790847344	5.5940628364968	5.90222579267539	6.07714990514818	6.05508782728037	6.08163274425414	5.8987874672659	0.322204730240721	0.190047451750177	0.489130299686355
Merged-chr19-46444448-3	chr19	46444344	46444544	+	906.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 3 of 11)	intron (NM_001025391, intron 3 of 11)	47548.0	NM_015752	24069.0	Mm.41210	NM_015752	ENSMUSG00000025231	Sufu	Su(fu)	SUFU negative regulator of hedgehog signaling	protein-coding	3.79841487709745	3.74182997437564	3.63881810584111	3.89489347694978	3.84804761406863	3.8116346869842	3.96718606165301	3.63695055878719	0.121246390052913	0.790606733358628	0.918840742585233
Merged-chr15-9123666-2	chr15	9123566	9123766	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 5 of 9)	intron (NM_013787, intron 5 of 9)	16788.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	3.53384098719147	3.06659493505376	3.28992300664633	3.28869846293719	2.85717208382539	3.16470490155304	2.90932499831616	3.1754301591491	-1.10079758242993	0.068443515258949	0.279374984093172
Merged-chr18-60268766-3	chr18	60268666	60268866	+	968.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001034859, exon 2 of 2)	3' UTR (NM_001034859, exon 2 of 2)	4501.0	NM_001034859	225594.0	Mm.329460	NM_001034859	ENSMUSG00000068606	Gm4841	EG225594|Ifgga3	predicted gene 4841	protein-coding	4.36025321720533	4.33277497768859	4.57378901794396	4.20442371343495	3.92983038339891	3.90636881027344	3.57882252005411	3.951344697052	-1.37550906881894	0.00229300804153541	0.0259936326466713
Merged-chr11-100736217-4	chr11	100736110	100736310	+	769.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	2005.0	NM_024456	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	4.0578934245863	3.7670615003338	3.66345763276525	3.6662525577958	3.76950181712418	3.72265360915235	3.95299058357332	4.05592859610192	0.259488793655695	0.572558843909418	0.811251013052168
Merged-chr15-97672320-3	chr15	97672207	97672407	+	759.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33515.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	2.99634316547089	2.89348253700943	2.93737269991333	2.94241063453065	2.9160487781738	2.84615741901393	2.80137747185742	3.10598671653757	-0.0837151429309045	0.888506970638091	0.958180162421076
Merged-chr12-119069962-3	chr12	119069849	119070049	+	914.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103528.0	NM_029961	77706.0	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	3.48932687043835	3.52409889193959	3.80822257218994	3.77193737018642	3.76726640177138	3.87938088580166	3.47736625010683	3.60290496008233	0.0904087021416184	0.853368506236044	0.944782811386362
Merged-chr6-129501146-3	chr6	129501034	129501234	+	895.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138648, intron 2 of 7)	intron (NM_138648, intron 2 of 7)	6031.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	5.01213688760829	4.76285504027239	5.54075158861814	5.30602008504824	3.51172748460691	3.61057159047891	3.54570421980816	3.63477410217448	-5.05324904634722	3.77606765782007e-13	4.41341083441666e-11
Merged-chr3-96576857-4	chr3	96576718	96576918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10017.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	7.43323066565983	7.52798989237353	7.50004299133894	7.41627947460707	7.19708133865891	7.63996579088951	7.36859706547077	7.30839081404322	-0.116392150128855	0.529497406060509	0.785664169310228
Merged-chr17-70119004-3	chr17	70118904	70119104	+	877.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 2 of 14)	intron (NM_001347411, intron 2 of 14)	149931.0	NM_001347411	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	3.61621679968201	4.32400256714551	4.10631587182148	4.46512887460607	3.40460218857243	3.47528609603189	3.2735846299623	3.49088027058263	-2.42875506957575	1.55443029877912e-05	0.000408728460424083
Merged-chr8-70892845-3	chr8	70892679	70892879	+	924.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053248)	promoter-TSS (NM_053248)	-22.0	NM_053248	114479.0	Mm.172923	NM_053248	ENSMUSG00000000792	Slc5a5	NIS	solute carrier family 5 (sodium iodide symporter), member 5	protein-coding	3.30044826994635	3.54576113531927	3.10723175085933	2.73857647776213	3.41405185209422	3.6920828480632	3.28814477178318	3.51970811223605	0.972757901064684	0.112884876522286	0.371420623567672
Merged-chr11-70459484-2	chr11	70459384	70459584	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348337)	promoter-TSS (NM_001348337)	51.0	NM_001029929	574428.0	Mm.425692	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	3.99791647866508	4.98745719490738	4.53208532694905	4.10065801985649	4.59155568356957	4.53785413272131	4.19995247749925	4.64319419789	0.0894576823684071	0.84424662922358	0.940887937958057
Merged-chr10-69260180-4	chr10	69260068	69260268	+	951.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252637, intron 4 of 10)	intron (NM_001252637, intron 4 of 10)	46974.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	4.900199161643	4.77482131680112	4.6726593381486	4.52854311557103	5.07974253484624	4.92803542203618	5.06909248144768	4.78874743129096	0.542677499655399	0.103001313720225	0.352477428331342
Merged-chr8-91344862-4	chr8	91344763	91344963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011936, intron 1 of 8)	intron (NM_011936, intron 1 of 8)	31338.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	5.89205418520732	5.97316285183031	5.56707807070717	5.87421216345664	5.56901507327451	5.8260072868889	5.81832243926682	5.74887423571607	-0.171700776802637	0.508930832822396	0.773827521189954
Merged-chr2-84799342-4	chr2	84799228	84799428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019949, intron 1 of 3)	intron (NM_019949, intron 1 of 3)	500.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	7.13326902834763	7.49903209847316	6.72886714227055	6.82886038050894	7.17829677385691	7.14419854597118	6.76917132182548	6.48731356126054	-0.210380776419313	0.42404600377061	0.715935710784696
Merged-chr2-52860451-3	chr2	52860413	52860613	+	671.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	2645.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.29586525704566	3.49609511905829	3.46124223129569	3.01169256284971	3.37845258006456	3.34948273156282	3.09786390106004	3.45919817678216	0.0261855226088116	0.962995637418253	0.986785288222419
Merged-chr14-46993395-3	chr14	46993294	46993494	+	908.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-7946.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	3.61109923099123	3.47959646065169	3.66307844399851	3.96778300238253	3.6982775992926	3.4953568161116	3.43139144188447	3.44179160950053	-0.567148360768318	0.271569301001968	0.583247666197459
Merged-chr10-108191698-4	chr10	108191602	108191802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027892, intron 1 of 25)	intron (NM_027892, intron 1 of 25)	29302.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	7.79750411447819	7.93613603942225	8.31978192019917	8.17261676401083	7.75534892265211	7.72426615043782	8.00324118966354	7.86252509306746	-0.304031475711944	0.102453517385272	0.351572369808042
Merged-chr9-58630650-4	chr9	58630528	58630728	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357751, intron 4 of 8)	intron (NM_001357751, intron 4 of 8)	48388.0	NM_001357751	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	4.85596114579665	4.13925878867981	4.75817398750606	4.54376110555252	4.40581595172547	4.70708854373018	4.19365490331692	4.57126822744036	-0.258980706458873	0.524873038767622	0.783112942735533
Merged-chr5-102640818-3	chr5	102640725	102640925	+	728.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029270, intron 2 of 9)	intron (NM_029270, intron 2 of 9)	-127985.0	NM_001286468	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	3.60923004544444	3.37532204265744	3.81677476128936	3.63607207153614	3.35234210883978	3.98609370217858	3.75179691202057	3.86127662673679	0.408412000406239	0.424938058693421	0.716567599871949
Merged-chr4-133844425-3	chr4	133844385	133844585	+	951.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	30246.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	3.56234592580665	3.59365139628049	3.34315967056346	3.68072750724032	3.50164838472704	3.32816658334787	3.27107880491423	3.39995886894206	-0.597388930218346	0.250423618467482	0.561555753855993
Merged-chr6-124309128-4	chr6	124309003	124309203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_053094, exon 4 of 17)	exon (NM_053094, exon 4 of 17)	4452.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	6.94925329668307	6.17536085078076	6.98653316366725	6.7887536064396	6.56902718742098	6.64266888318889	6.67479687359436	6.87017283861955	-0.0973362728752869	0.69411771377656	0.87574740044461
Merged-chr12-36041870-4	chr12	36041756	36041956	+	868.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	622.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	4.49942884412911	4.26884143642281	4.0261093561299	4.38497843603548	4.26186903542415	4.03983516106611	4.06035668656929	4.17132728174084	-0.419341968757551	0.307232790517292	0.619449859505348
Merged-chr2-121442646-4	chr2	121442651	121442851	+	855.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145973)	promoter-TSS (NM_145973)	-150.0	NM_145973	269344.0	Mm.330522	NM_145973	ENSMUSG00000027246	Ell3	A930015D22Rik	elongation factor RNA polymerase II-like 3	protein-coding	3.02282289539642	3.15133006784185	2.95363873217601	3.14737726484013	3.27194594801729	3.59384969109908	3.14104379219123	3.37576564381868	1.01830022748941	0.0707901335746647	0.285242270926058
Merged-chr17-57167182-3	chr17	57167080	57167280	+	757.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17403.0	NM_011617	21948.0	Mm.42228	NM_011617	ENSMUSG00000019489	Cd70	CD27LG|Cd27l|Tnfsf7|Tnlg8a	CD70 antigen	protein-coding	3.2655045519949	3.38305922225814	3.37637992964243	3.28874369335219	3.2308913897229	3.04809119858415	3.30948232205663	3.32054319264838	-0.351226944648375	0.513370007773427	0.77646733267772
Merged-chr2-119897218-4	chr2	119897127	119897327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164274)	promoter-TSS (NM_001164274)	-1.0	NM_001164274	29808.0	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	7.7835432265307	7.43313894470894	7.28167681433412	7.49493643331807	7.35643275332756	7.62157013961597	7.20125695208431	7.23237428423636	-0.198202757951751	0.324122143378651	0.635660043706099
Merged-chr6-128845516-4	chr6	128845412	128845612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19197.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	6.98979654444545	6.7884235212566	6.70069418267276	6.97454473378965	7.15013751176162	6.72978015631359	7.20002455948828	6.85591369634148	0.18418699271961	0.387009715867703	0.688039112029745
Merged-chr11-17003030-4	chr11	17002910	17003110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	5708.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	7.42639813498902	7.88637762229474	7.74914093566609	7.83361363646492	7.8410752335031	7.55362180153643	8.003988593346	7.3599461602035	-0.0295271489555798	0.888068976809292	0.95799613184499
Merged-chr17-33524110-4	chr17	33524002	33524202	+	967.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172619)	promoter-TSS (NM_172619)	17.0	NM_001329147	224697.0	Mm.29304	NM_172619	ENSMUSG00000024299	Adamts10	9430006O18|AW045948|Adam-ts10|Adamts-10|Znmp	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	protein-coding	5.120829349497	5.2450299004411	4.79570420843806	5.04265465004811	5.15851233228834	5.26212185389334	5.03156390712555	4.94756925135184	0.0827155942931899	0.79261327215648	0.919627897475503
Merged-chr19-12430630-3	chr19	12430528	12430728	+	740.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019540, exon 2 of 2)	3' UTR (NM_019540, exon 2 of 2)	2723.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	3.40851101003908	3.56190492550781	3.57052683746033	3.4820348917273	3.68405643151729	3.19495871572043	3.39639211534086	3.46324127481606	-0.16311960887871	0.755017194112968	0.903550369208227
Merged-chr16-10438214-4	chr16	10438117	10438317	+	867.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013778, intron 1 of 6)	intron (NM_001013778, intron 1 of 6)	9145.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	4.03418309297291	3.7852242333885	4.0796083467827	4.54486666028263	3.85422617433766	3.78796005582282	3.39321600309789	3.93781695308693	-1.08825971589704	0.035627704643375	0.187417366699489
Merged-chr10-123076447-4	chr10	123076340	123076540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153395)	promoter-TSS (NM_153395)	65.0	NM_001163024	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	8.04480984895134	8.02381901125454	7.86416495917951	8.20073746123016	8.32224031129028	8.39461790035904	8.7494449646273	8.22315451119301	0.499277031069831	0.00652899430501119	0.0577879447704482
Merged-chr5-117505351-4	chr5	117505270	117505470	+	971.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 2 of 19)	intron (NM_001312914, intron 2 of 19)	91368.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	4.63701790572622	5.25074184316663	4.59060645604766	4.54429840138344	5.04853425971827	5.58798079713898	5.22845282131322	5.38768752292884	1.02042054044318	0.00470520545310465	0.0454361255450199
Merged-chr3-51427969-4	chr3	51427863	51428063	+	801.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053089, intron 1 of 19)	intron (NM_053089, intron 1 of 19)	11947.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	3.86183298204635	4.04378899029327	3.96329553710564	3.87171554295389	4.07010565501419	4.08534147026135	3.99362602821287	3.8067471213728	0.171648059305142	0.687030729362204	0.872037964629308
Merged-chr2-91485921-4	chr2	91485816	91486016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172668, exon 17 of 38)	exon (NM_172668, exon 17 of 38)	28385.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	5.64432275815456	5.57783043916079	5.42499594593687	5.88578173863352	5.48344299122897	5.50881121377655	5.61679822910193	5.56320629613812	-0.207511678445111	0.45282944419762	0.73705030775748
Merged-chr2-126499906-4	chr2	126499821	126500021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359975)	promoter-TSS (NM_001359975)	-74.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	6.28353892652127	6.22425870570681	6.14892850101401	6.16000266953308	6.17064862271756	6.21897419320638	6.17715382986964	6.43540771027917	0.0760537538912402	0.734856980334632	0.895289350322449
Merged-chr17-81544652-1	chr17	81544552	81544752	+	551.0	f0_balb.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	193735.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	3.16546762336284	3.15456497510084	3.22263612887055	3.15051695084998	3.19843144134261	3.33442958069217	2.90231457956037	3.04287531619376	-0.161420103022454	0.776606102988853	0.912947295655479
Merged-chr10-117302041-4	chr10	117301926	117302126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9158.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	6.79616516087484	6.78241507071164	6.6999400435271	6.55677715557309	6.83571714713198	6.47137332344195	6.28088399476842	6.26870800105423	-0.296881041864205	0.209614023108695	0.514148979562816
Merged-chr1-181540621-4	chr1	181540506	181540706	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29155.0	NM_207280	403180.0	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding	5.17749952896809	5.80544776558008	5.17837466657069	6.20181149032272	5.09437948041311	5.04576865910957	5.69132332555683	5.64499403734331	-0.477121072659636	0.211804831185606	0.516586351389811
Merged-chr10-13323441-4	chr10	13323317	13323517	+	881.854126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	872.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	3.91681723631223	3.90423217922866	4.19873365610364	4.04713955451765	4.37674105234631	3.8082461047758	4.04823168214549	4.06332944713381	0.212834390216847	0.628197570348581	0.841427212108636
Merged-chr17-34627484-4	chr17	34627324	34627524	+	843.8988039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019441)	promoter-TSS (NM_019441)	11.0	NM_001302396	54397.0	Mm.373627	NM_019441	ENSMUSG00000015474	Ppt2	0610007M19Rik|AA672937	palmitoyl-protein thioesterase 2	protein-coding	3.99655500460953	3.94339144069185	3.858708438197	3.93026141917139	3.57787082477011	3.76504142194851	3.57560002925846	3.80677594334035	-0.756842705107341	0.0976056966674544	0.342391990690096
Merged-chr16-90222449-6	chr16	90222362	90222562	+	985.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011434, intron 1 of 4)	intron (NM_011434, intron 1 of 4)	1720.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	4.99385133851732	4.70572501220323	5.38917841404622	5.22637555356793	5.1803955596532	4.8546206226646	5.2540264518525	5.12618885674771	0.0166910343968994	0.960436785711978	0.985883800393479
Merged-chr18-39582095-3	chr18	39581994	39582194	+	896.0277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94849.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	3.91389759274615	4.21426568040585	4.10471974745157	3.6989983805481	3.63497803485186	3.98483343099688	4.2496871437497	3.91217157270141	-0.0848316091225038	0.858085249414694	0.946507493877689
Merged-chr15-90224236-4	chr15	90224131	90224331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033441)	promoter-TSS (NM_001033441)	-80.0	NM_001033441	380959.0	Mm.17853	NM_001033441	ENSMUSG00000075470	Alg10b	AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5	asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)	protein-coding	8.40504934484885	8.40636796315583	8.5981932087517	8.74655303668252	8.67751889614904	8.35731047348434	8.68413174526604	8.39026800974933	-0.0155850572476862	0.928310764408932	0.973969592850704
Merged-chr4-39611235-4	chr4	39611153	39611353	+	956.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	160960.0	NM_001081095	75471.0	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	4.5311319733492	3.88261745683161	4.7631241475001	4.78924500228155	4.71874729634316	4.38035574156086	5.04761564881747	4.61064672108182	0.359310555832972	0.419148103574172	0.712251159515261
Merged-chr1-171017945-4	chr1	171017776	171017976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1050.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	5.83022451826479	5.99700292329034	6.27841792772379	6.20314768574383	6.13264075639172	6.17485211307518	5.77608447156895	6.48732635012893	0.109925852383689	0.678803991989238	0.868160228299888
Merged-chr11-46812628-4	chr11	46812510	46812710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 1 of 8)	intron (NM_178759, intron 1 of 8)	1811.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	7.10134073410611	7.37349516320778	7.42053456914997	7.19929711960029	7.08607131436793	6.99298464961777	6.94464115798444	6.35664195069543	-0.546085383921054	0.0162064044800225	0.11068467323772
Merged-chr10-128498800-4	chr10	128498678	128498878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131150)	promoter-TSS (NR_131150)	-93.0	NM_172259	216459.0	Mm.291688	NM_172259	ENSMUSG00000039824	Myl6b	5730437E04Rik|BC037527|MLC1SA	myosin, light polypeptide 6B	protein-coding	8.12669172193323	8.64761148879685	8.0482245320525	8.22511013480455	8.36373210095514	8.47426842299259	8.51078494941235	8.22757612503362	0.14203760999191	0.45069306067807	0.735430242357605
Merged-chr2-32744827-4	chr2	32744752	32744952	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001252547, exon 3 of 11)	exon (NM_001252547, exon 3 of 11)	-3836.0	NM_027529	70730.0	Mm.401360	NM_027529	ENSMUSG00000009551	6330409D20Rik	AA517851	RIKEN cDNA 6330409D20 gene	protein-coding	4.13838982697282	4.00535217150297	3.84299056427311	4.3637979095301	3.63235501802448	3.58126906242308	4.39326585386257	4.17968393034138	-0.300751899056169	0.557798498354712	0.802870244163836
Merged-chr7-141414195-4	chr7	141414098	141414298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172116)	promoter-TSS (NM_172116)	-73.0	NM_172116	213350.0	Mm.290953	NM_172116	ENSMUSG00000051007	Gatd1	BC023835|D230016J19Rik|Pddc1	glutamine amidotransferase like class 1 domain containing 1	protein-coding	8.25070394201749	8.58093618010541	8.01705995304916	8.17105055153269	8.3929902536558	8.50837956900628	8.22472366513502	8.10585478195789	0.0577462196866064	0.759104624219077	0.905467910117288
Merged-chr8-13640477-3	chr8	13640383	13640583	+	903.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	37104.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	3.75063416693998	3.83799809922619	3.65038826365683	3.7135372661653	3.57352943437822	3.47078844500503	3.52802867568334	3.69970400833506	-0.533218244651292	0.262299594895968	0.574184293693129
Merged-chr18-60515720-3	chr18	60515594	60515794	+	598.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-10460.0	NM_026302	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	3.28031929513317	3.01566026939748	3.01232880897045	3.1390459385469	2.9190912142286	2.77505640052665	2.87745760800194	3.17935224543352	-0.726520825139665	0.23636076854054	0.546390930594886
Merged-chr19-29448560-4	chr19	29448463	29448663	+	998.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 4 of 5)	RLTR14-int|LTR|ERV1	37644.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	5.32344204065255	5.13551557835071	5.49409654647715	5.6127737346213	5.55804940887983	4.99444490511597	5.51789249757406	5.29005778088419	-0.0804720381136843	0.79737490127257	0.921630258034137
Merged-chr10-51455597-3	chr10	51455492	51455692	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25020.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	5.09875064210396	4.73226616993312	4.89258468877849	4.55337333024057	4.93623319350271	4.59736559971162	4.40316454840772	4.41909413206512	-0.434555978161967	0.263977215943755	0.576033423883642
Merged-chr5-97009239-4	chr5	97009147	97009347	+	936.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	11558.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	4.20705316551327	4.28758384427042	4.59304247581199	4.47562382789726	4.44163348284037	4.43167452056113	4.53415509210514	4.43304191113196	0.12850059094596	0.7307066920536	0.893244019160978
Merged-chr11-79140338-4	chr11	79140254	79140454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	6119.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	6.34308042115623	6.13444789743367	5.99922299246845	6.34598412548241	5.80006629330914	5.53893306708353	5.92392371646801	6.3396503911076	-0.446825147717759	0.103431586765841	0.35340614988507
Merged-chr15-57980908-4	chr15	57980835	57981035	+	976.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4968.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	5.03313008590256	5.73351888183232	5.24103409446859	5.4594805101805	5.3902962776202	4.97154544438488	5.21524110098565	5.52145713396853	-0.188463225672191	0.563603744332748	0.806428731514002
Merged-chr10-128493902-4	chr10	128493811	128494011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010860)	promoter-TSS (NM_010860)	-25.0	NM_010860	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	6.83168694564267	7.03648172632543	6.47383118129234	6.76071231357622	7.12470794831293	7.20632985527259	7.34067286507557	7.00029770575862	0.524907599828238	0.0128219133963184	0.0942042706065799
Merged-chr12-52502321-4	chr12	52502228	52502428	+	961.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13749.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	5.32879750968811	4.82496053655808	4.73930566354877	5.58109816867243	5.26992402964355	5.15588078527709	4.9917169982366	5.1789228702972	-0.0578963717560168	0.872755694920679	0.952278341515429
Merged-chr10-78574689-7	chr10	78574614	78574814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359303)	promoter-TSS (NM_001359303)	201.0	NM_001359301	216136.0	Mm.2644	NM_173751	ENSMUSG00000032763	Ilvbl	5830463I21|AI415009	ilvB (bacterial acetolactate synthase)-like	protein-coding	6.57676588874881	6.72157629869113	6.69117286812211	6.58935995259623	6.91414587843332	7.09344352603682	6.9448663009206	7.229901182836	0.567145846976509	0.00436686213050355	0.0429262366506162
Merged-chr15-96627390-4	chr15	96627262	96627462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	intron (NM_001166458, intron 1 of 15)	14600.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	6.07868889580653	6.12890627702741	6.18309457590384	6.60644593701112	6.27052139899547	5.97038754935215	6.228022665869	6.21771843990704	-0.162794800864019	0.521412283868745	0.781404854166528
Merged-chr4-49688768-4	chr4	49688688	49688888	+	678.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033351, intron 6 of 8)	intron (NM_001033351, intron 6 of 8)	-6805.0	NM_001004025	19059.0	Mm.46125	NM_001004025	ENSMUSG00000028310	Ppp3r2	CaNB2|CnB2	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type II)	protein-coding	3.67993581872737	3.95829164940599	3.68039656978523	3.95541896560767	3.96584660106582	4.07272548023449	4.23237660532468	3.99582953057962	0.623147982643407	0.159882445866186	0.447689717321371
Merged-chr10-12929911-3	chr10	12929795	12929995	+	908.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6768.0	NR_038028	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	3.84197342475444	4.14815350952471	4.44919037983652	4.2175773519421	3.49738809949604	3.73775636457684	3.54174982757708	3.41816796031156	-1.91540890960253	0.00014203981664071	0.0027251353392639
Merged-chr15-89180840-4	chr15	89180742	89180942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138749)	promoter-TSS (NM_138749)	-54.0	NM_138749	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	7.10452719240247	7.09867705881637	7.08224487144897	6.94583000961356	7.04090884034662	7.08107392469361	7.14872180535688	7.06534471323811	0.0432228830602597	0.814145000549736	0.928273613135402
Merged-chr13-111555477-3	chr13	111555367	111555567	+	918.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-5558.0	NR_151444	102636218.0	Mm.343364	NR_151444	ENSMUSG00000085634	Gm15290	-	predicted gene 15290	ncRNA	3.98072245937639	4.34570934723873	4.2047262536616	4.2768263952161	3.71798419560019	3.70413273811913	3.75535812580613	3.92923351987494	-1.22382407690231	0.00605561191910289	0.0546509954088785
Merged-chr14-63132486-4	chr14	63132377	63132577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	10015.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	7.90269759849988	7.94777989664371	7.75810952538323	7.82687813902218	7.58820410533567	7.6882960861593	7.21334652715743	7.25601122082156	-0.532776109950203	0.00475574434087321	0.0458218607312377
Merged-chr14-66186266-4	chr14	66186163	66186363	+	919.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 5 of 30)	intron (NM_001162366, intron 5 of 30)	27561.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	4.47077010161575	4.44490883748982	4.562106155383	4.15318726860894	5.29355727199624	4.97533571504426	4.97805921524822	4.90298901420838	1.39346318340448	6.51852090643718e-05	0.00141414751477992
Merged-chr10-59887560-4	chr10	59887411	59887611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019965, intron 1 of 8)	ID4|SINE|ID	7920.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	5.60426034750164	5.61777685306084	5.60523979788065	5.38435220456745	5.37855638531529	5.58905814549996	5.32728210987367	5.46787925366289	-0.181980222509887	0.509265015341146	0.773959348649789
Merged-chr19-24997367-4	chr19	24997293	24997493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2136.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	5.29950684387487	5.4218331165944	5.45328396584161	5.89473824420201	5.54760940726278	5.73720645827436	5.24177529871321	5.55968886551332	-0.0503984547659447	0.869865351778445	0.951136701756424
Merged-chr4-11481296-4	chr4	11481201	11481401	+	893.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4657.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	4.01353928092539	3.76393852874198	4.25502331834011	4.03702232805515	4.27580031700445	4.51007804502507	4.35992127497266	4.37764832006877	0.875976955366035	0.0310360703721748	0.171222791274301
Merged-chr11-119363763-4	chr11	119363663	119363863	+	858.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178743, intron 6 of 16)	intron (NM_178743, intron 6 of 16)	8206.0	NM_178743	268512.0	Mm.31869	NM_178743	ENSMUSG00000039908	Slc26a11	F630021I08Rik	solute carrier family 26, member 11	protein-coding	3.91144550733228	4.03025467942488	4.0062936175629	3.5993195746468	4.00149125237191	3.9834533467959	3.7949002142472	3.75419107545251	0.0188683954493129	0.967315336314608	0.988506166892638
Merged-chr7-118479992-3	chr7	118479902	118480102	+	797.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	11973.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	3.27802705596867	3.81935738786899	3.14886243619036	3.04216972462812	3.38925055828963	3.45422500979698	3.3261778191559	3.55366155635206	0.252694497514573	0.66313942308683	0.860416722796578
Merged-chr13-107676578-4	chr13	107676469	107676669	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER121|DNA|TcMar?	-10828.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	5.01264435847324	5.24884289697872	5.35515910914776	5.46464751977342	4.62124244868717	5.00106920783316	5.1853249242268	5.14508731548715	-0.560977001768053	0.0922564879843704	0.332223239817844
Merged-chr11-101232279-3	chr11	101232186	101232386	+	891.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5823.0	NM_007970	14055.0	Mm.5027	NM_007970	ENSMUSG00000006920	Ezh1	ENX-2	enhancer of zeste 1 polycomb repressive complex 2 subunit	protein-coding	3.69909001707566	3.3763014463027	3.41332057515584	3.29635314427322	3.12756393086803	3.22452287759961	3.28897632665126	3.17739235357438	-0.905428481883925	0.0997102481272063	0.346360634007438
Merged-chr7-80246353-4	chr7	80246244	80246444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177765)	promoter-TSS (NM_177765)	-32.0	NM_177765	269954.0	Mm.276780	NM_177765	ENSMUSG00000045467	Ttll13	1700111A04Rik|4921538O11|BC024578	tubulin tyrosine ligase-like family, member 13	protein-coding	7.81978227960234	7.83831752826016	7.29812072851178	7.49975638972533	7.75432210535856	7.73719505733131	7.81220816251678	7.50834732008469	0.102509362867038	0.602936374166214	0.82789000124091
Merged-chr14-66847756-4	chr14	66847667	66847867	+	874.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	20833.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	4.37887731444101	4.50757065366393	4.46381684879426	4.06332845580971	4.77991929773332	4.26809397929673	4.52139416249162	4.23930765203647	0.304762309030875	0.456175134201227	0.73955513964784
Merged-chr6-70875408-4	chr6	70875320	70875520	+	945.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010121, intron 2 of 16)	intron (NM_010121, intron 2 of 16)	30905.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	4.90347956785846	4.77543025436138	5.0312573507849	5.10506300705192	4.6464304876239	4.44920906482863	4.62262303570914	4.75867425789859	-0.72167106902864	0.0357136750634688	0.187703143863446
Merged-chr2-52959243-4	chr2	52959139	52959339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	101371.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	6.2287846078352	6.39905263136939	6.7436558234578	6.82031630669971	6.09009402388766	6.21601275265129	6.25579794644693	5.98622947935257	-0.664015452519219	0.00732556511989214	0.0629286024220134
Merged-chr16-90259957-4	chr16	90259866	90260066	+	967.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 4 of 19)	intron (NM_001346799, intron 4 of 19)	24520.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	5.53402438616537	5.50181234254413	5.68451561577324	5.76198201346388	5.60640429784905	5.12198143401566	5.45338825848133	4.97720628003719	-0.524715974081691	0.0873626540800472	0.322434976502057
Merged-chr19-34445789-4	chr19	34445614	34445814	+	845.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29421.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	3.93939744582799	3.73302618574499	3.5606586176707	3.7025477488695	3.48014843135038	3.36342722469042	3.60027726434095	3.44343947449129	-0.85228525905651	0.0873963802337841	0.322459895085463
Merged-chr7-16244291-4	chr7	16244204	16244404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176912)	promoter-TSS (NM_176912)	-150.0	NM_176912	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	7.37682509028843	7.33766392926482	7.39793365971815	7.3053495871493	7.58270665941134	7.50413851128932	7.25905995105916	7.40260485876993	0.12878456531265	0.469658932249396	0.748495910704808
Merged-chr10-77962874-4	chr10	77962746	77962946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 4 of 33)	L1MDa|LINE|L1	7026.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	6.56913440656148	6.30038458579012	6.15534964998489	6.11985942160355	6.44625591561646	6.31106464878694	5.99530971894138	6.06628256762574	-0.0948591198255778	0.704583115514729	0.881307709007534
Merged-chr8-119440592-4	chr8	119440494	119440694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027950, intron 1 of 5)	intron (NM_027950, intron 1 of 5)	3432.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	6.46913277724303	6.73327787862524	6.61667610065405	6.45211540000202	6.52727709612528	6.71343893638598	6.53620922057754	6.43069712708332	-0.0204193346240963	0.923870621390015	0.971863340184091
Merged-chr15-8625580-4	chr15	8625481	8625681	+	853.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85226.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	3.99876871721704	4.05233580197251	4.14168499546802	4.39334249919995	4.05468644454636	4.12185771551709	3.87973403421564	4.09350968246366	-0.344271779500516	0.419718237099855	0.712781243418825
Merged-chr7-118802043-3	chr7	118801937	118802137	+	733.733337	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 21 of 30)	intron (NM_027815, intron 21 of 30)	53576.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	3.55316480239708	3.32330968064231	3.33042787571953	3.2782903597466	3.546388563066	3.24571970801971	3.58841232243271	3.69638115142272	0.550449413277612	0.284480632569298	0.596324963525583
Merged-chr6-37197015-3	chr6	37196914	37197114	+	923.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	102962.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	4.23873180905427	3.84840959027874	4.47828864313929	4.55248993981485	3.85375594834833	4.06915835154373	4.03392867773582	4.32137452257636	-0.605825240322383	0.181770629558219	0.478446672285694
Merged-chr8-120704412-3	chr8	120704327	120704527	+	846.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31931.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	3.5092540844605	3.6071553091092	3.45243710575351	3.23643059462745	3.63162477852382	3.68251652863696	3.87556829074199	3.26270720345112	0.586955361207367	0.261195171249224	0.57310306916775
Merged-chr8-46311370-4	chr8	46311223	46311423	+	880.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-16652.0	NM_173789	234219.0	Mm.145631	NM_173789	ENSMUSG00000047171	Helt	A830086M02|Hesl|Heslike|Mgn|megane	helt bHLH transcription factor	protein-coding	4.53341547397553	3.70479973403419	3.84066351241949	4.30421365781932	4.1293232570224	3.96286661384064	4.08244840790524	4.23161290932519	-0.095489078512749	0.839859913409156	0.939131078101489
Merged-chr19-4756495-4	chr19	4756384	4756584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025717)	promoter-TSS (NM_025717)	-41.0	NM_025717	66704.0	Mm.396734	NM_025717	ENSMUSG00000033760	Rbm4b	4921506I22Rik|AI504630|AI506404|Lark2|Neosin	RNA binding motif protein 4B	protein-coding	7.59986404653656	7.48430692768275	7.0643748174246	7.04848389066278	7.44794976292698	7.5076832155132	7.55539179977592	7.56191619836935	0.271989548309533	0.184133120830193	0.48141088733048
Merged-chr10-91168346-3	chr10	91168318	91168518	+	884.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080129, intron 1 of 8)	B1_Mus1|SINE|Alu	2132.0	NM_001283048	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	3.38607780950638	3.16072389998073	3.38659005687529	3.32799389536396	2.93618091020322	3.02359633548561	3.10155157042193	2.91424367257345	-1.33798574106565	0.0226943867840242	0.139207493700453
Merged-chr3-55549593-3	chr3	55549505	55549705	+	972.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87877.0	NM_001357476	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	4.38596585583064	4.2749896998799	4.61908918361833	5.02773716172765	3.87808072085687	4.17555903010898	4.0857532594118	4.29602128625758	-1.24689729645458	0.0045698535856869	0.0444246938508069
Merged-chr4-150569426-6	chr4	150569262	150569462	+	991.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	CpG	82812.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	4.64531109660592	4.79052947974662	5.35815506788079	4.47584835744448	4.80283823949168	5.12629873444289	4.78580955737012	5.01626599620328	0.175574533830859	0.644738370320975	0.850510257257065
Merged-chr17-35379517-4	chr17	35379438	35379638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001143689)	promoter-TSS (NM_001143689)	-79.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	8.14501147534955	8.61118435350507	8.18303600019284	8.04960639609248	8.26979755185295	8.33026179657579	8.07638083836597	7.80077422755628	-0.162928804485989	0.420324995054463	0.713229765679466
Merged-chr4-135206433-4	chr4	135206328	135206528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	66332.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	6.31163169561082	6.82338590397259	6.4049893765342	6.5116627834272	6.28098069642043	6.66666086857323	6.35439413793697	6.40040945954599	-0.15459504409704	0.510135837314466	0.774534646534979
Merged-chr9-40727773-3	chr9	40727666	40727866	+	989.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	MTC|LTR|ERVL-MaLR	41802.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	4.69801359490479	4.24371836704938	5.01569389694483	5.01578450708373	3.60946198407667	3.62615947973041	3.89354919503058	3.7164570708918	-2.91375323921527	8.32815147569092e-09	4.47388297274116e-07
Merged-chr11-11685575-4	chr11	11685483	11685683	+	974.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301868)	promoter-TSS (NM_001301868)	-342.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	6.0536580985041	5.97237397224233	6.16777212105199	5.88488822387692	5.92812774314225	5.20541579163879	5.83336061035697	5.51895805276169	-0.566591928459455	0.0482414564916505	0.226681979906205
Merged-chr19-7482843-1	chr19	7482743	7482943	+	1000.0	f0_c57.idr	intron (NM_001003934, intron 1 of 8)	CpG	448.0	NM_001271486	20168.0	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	5.64790118185878	5.55717673344105	5.1713832938279	5.50768256394265	5.68493211795344	5.42033123872642	5.34520300183798	5.97101468880599	0.251165396864199	0.401212769914784	0.698869974053897
Merged-chr19-60666027-4	chr19	60665946	60666146	+	954.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58A|DNA|hAT-Charlie	-85023.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	4.52314329351318	4.33514859822084	4.47988785777814	5.06284459277382	4.95504962617707	4.69896527209932	4.32001385822877	4.82670294160681	0.154892073805796	0.709593201735604	0.883642724791171
Merged-chr16-21590499-3	chr16	21590415	21590615	+	687.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 44 of 46)	intron (NM_001081366, intron 44 of 46)	104150.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	3.4004760313006	2.98138187318404	3.19689883010075	3.36313900727545	3.08247646487522	2.91895268887685	2.94465127212511	3.01742377392305	-1.02758567535101	0.0873655795173219	0.322434976502057
Merged-chr6-90653951-2	chr6	90653851	90654051	+	757.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34705.0	NM_001037493	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	2.79542652106542	2.76358431030591	2.65732890513635	2.47158261821178	3.00027176975964	2.96998653332687	2.90982082480768	3.0872243494203	1.53829673464013	0.0146133595830497	0.10284401045698
Merged-chr7-118488334-4	chr7	118488263	118488463	+	966.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033380, exon 1 of 1)	3' UTR (NM_001033380, exon 1 of 1)	3612.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	4.57569382381915	4.60742537461732	4.27466330608855	4.53943460368726	5.13352686569473	4.92228170382139	5.35800563822125	5.23007110140563	1.3259326707324	8.98997254526419e-05	0.00185692761404341
Merged-chr10-82666633-4	chr10	82666549	82666749	+	970.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029102, intron 3 of 9)	L2c|LINE|L2	24001.0	NM_029102	74782.0	Mm.191281	NM_029102	ENSMUSG00000020251	Glt8d2	1110021D20Rik	glycosyltransferase 8 domain containing 2	protein-coding	4.77549413152574	5.00158210905619	4.21387043518663	4.67677121960721	4.77436321205888	5.0923735163571	4.9622085644057	5.01523303377398	0.528462333234909	0.149994963954753	0.432369154794288
Merged-chr11-116782812-4	chr11	116782722	116782922	+	932.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CGGGG)n|Simple_repeat|Simple_repeat	-7315.0	NM_011371	20445.0	Mm.436887	NM_011371	ENSMUSG00000009588	St6galnac1	Siat7a	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding	6.15409362124127	6.47429225460901	5.43236009257905	5.29969539188638	5.41040235431388	5.24400484444959	5.03429242717876	4.74986520569322	-1.36148857196024	0.000535993990279684	0.00816702818435025
Merged-chr4-32343421-4	chr4	32343317	32343517	+	986.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74018.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	5.80493620609818	5.41061646298481	6.45925974071929	6.60676338208039	4.9528084464301	4.57116133037291	5.37331664694722	5.75459717218466	-1.5218882836313	0.026926956620943	0.155985763516539
Merged-chr19-24990152-4	chr19	24990054	24990254	+	796.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	-9375.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	3.8095251066351	3.7193676015095	4.06114946937421	3.67715129917622	4.05176133816137	4.13880379374316	4.1302124960927	4.14662323512884	0.831225127722671	0.0517380737727126	0.236460228840705
Merged-chr14-70981264-3	chr14	70981159	70981359	+	910.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91152.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	5.62088479206044	5.15090929024625	5.60124696409402	5.87682380291946	3.59665003541029	4.07718443430802	4.17891880321419	3.86327148208092	-4.1271381699815	1.52958286377687e-16	3.13758439944594e-14
Merged-chr15-76511978-4	chr15	76511881	76512081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010046)	promoter-TSS (NM_010046)	13.0	NM_010046	13350.0	Mm.22633	NM_010046	ENSMUSG00000022555	Dgat1	ARAT|C75990|D15Ertd23e|Dgat	diacylglycerol O-acyltransferase 1	protein-coding	8.63755556974736	9.04441841753021	8.48595782161757	8.4591069530277	8.54966654714091	8.79871978976073	8.69448703298943	8.6378921993455	-0.0082521549100524	0.964225786252106	0.987306728614525
Merged-chr4-88514638-4	chr4	88514543	88514743	+	809.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8151.0	NM_010510	15977.0	Mm.1245	NM_010510	ENSMUSG00000048806	Ifnb1	IFN-beta|IFNB|Ifb	interferon beta 1, fibroblast	protein-coding	4.01585590241257	3.85040165839877	3.66686988104904	3.81583666604387	3.77203643089476	3.84176760923563	3.99839488675004	3.72094064426277	-0.016128639533617	0.971383797627069	0.989667458652484
Merged-chr15-99030055-7	chr15	99029979	99030179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009448, exon 1 of 4)	5' UTR (NM_009448, exon 1 of 4)	188.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	6.58310158366801	6.91732115569713	6.77714838090615	6.43420160950341	7.0502275468007	7.43152786226612	7.17746784384588	7.48169582691424	0.845712054811644	0.000115254452022799	0.00228397155452107
Merged-chr18-76242216-4	chr18	76242112	76242312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010754, intron 1 of 10)	G-rich|Low_complexity|Low_complexity	511.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	6.03800798673342	5.88043901028948	6.15525011847599	5.94512089926769	5.84573696390022	5.69855575686683	5.71413366075732	5.78932627011864	-0.375352460918387	0.128321205063954	0.398585626397538
Merged-chr7-135651910-4	chr7	135651795	135651995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316681)	promoter-TSS (NM_001316681)	-4.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	5.67875854249856	5.55600899023902	5.83160940967189	5.43070985936728	6.20941216950124	5.88345748904876	6.2707873422017	6.00503128125021	0.793870820894017	0.00210741207934236	0.0243512149992711
Merged-chr15-94589188-2	chr15	94589088	94589288	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008971, intron 1 of 8)	intron (NM_008971, intron 1 of 8)	636.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	2.91116265844625	2.94072124724565	3.15733478345474	2.93942109316155	3.04449578413359	3.08663247810862	3.14484467562131	3.26268856901428	0.603217665259151	0.287009297773937	0.598688122563992
Merged-chr16-91562184-4	chr16	91562076	91562276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008338, intron 6 of 6)	intron (NM_008338, intron 6 of 6)	15082.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	6.40048402926099	6.46228990206653	5.93337980564678	6.55649967812837	6.63103790536993	6.74345853096121	6.36884231328412	6.57891609321496	0.312235550112561	0.195653501619619	0.496467883204978
Merged-chr7-43396983-4	chr7	43396900	43397100	+	953.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11280.0	NM_172900	243958.0	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	4.73806481137973	4.97720664043494	4.98702815210494	5.30625978111379	4.52866229654327	4.45976052861434	4.75482765077365	4.77423854240307	-0.831539242330813	0.0199638644664162	0.127852753039306
Merged-chr11-21453895-4	chr11	21453797	21453997	+	970.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57283.0	NR_028259	237694.0	Mm.72926	NM_172792	ENSMUSG00000078962	4932414J04Rik	-	RIKEN cDNA 4932414J04 gene	ncRNA	4.66344256195586	4.57778160361824	4.20431605857298	4.31912497879551	4.62907785277845	4.64666357810268	4.18663024302688	4.15074785762207	-0.0426902692155562	0.916865419871926	0.969282812937318
Merged-chr12-55774494-4	chr12	55774368	55774568	+	770.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003719, intron 9 of 39)	Lx7|LINE|L1	47048.0	NM_019994	56784.0	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	3.81888739898327	3.53014340842758	3.53645720795126	3.95663214232911	3.86751394687154	3.7159398916233	4.18992091222266	3.96124913455398	0.58518548666555	0.228946338715428	0.537898450073456
Merged-chr1-127225275-4	chr1	127225165	127225365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	20279.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	5.95643641135093	5.77902892081109	6.10500745307823	6.26157424512746	6.0868764755553	5.83463269076527	5.94921951361225	6.03961535290856	-0.103054141667456	0.685190186543889	0.871242613005331
Merged-chr19-47090752-4	chr19	47090654	47090854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011053)	promoter-TSS (NM_011053)	-12.0	NM_011053	18572.0	Mm.41166	NM_011053	ENSMUSG00000025047	Pdcd11	1110021I22Rik|ALG-4|Pdcd7|mKIAA0185	programmed cell death 11	protein-coding	8.01542691226362	8.0835266684206	7.63181772612116	8.07627654941	8.12436690407437	8.0317333840107	7.87507494881745	7.77908068951522	-0.00937659082931945	0.959606573246622	0.985551429297447
Merged-chr15-25404022-4	chr15	25403918	25404118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	9746.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	6.17388236522646	6.39720137117312	6.15497465541796	6.10525679922573	6.26327021189498	6.13629302643665	6.12353245363584	6.1505800655399	-0.0508222515920826	0.824578447335031	0.932696938095671
Merged-chr11-103308084-4	chr11	103307990	103308190	+	959.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	36612.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	4.74128813908711	5.07956747285625	4.96888512639563	5.43007995516574	4.86684569958805	4.91896969729475	4.87435171586543	4.89437761185725	-0.42505491258274	0.217748288463904	0.524691528498242
Merged-chr12-111437348-4	chr12	111437260	111437460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5301.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	6.88882289817841	6.97472147318944	7.30318075997762	7.22045675133031	7.37654227551892	7.17423608318497	6.9228815308362	7.0908825057833	0.0629002576082766	0.763556725923873	0.907249475784712
Merged-chr7-138848488-2	chr7	138848388	138848588	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026391, intron 2 of 8)	intron (NM_026391, intron 2 of 8)	2102.0	NM_026391	52432.0	Mm.258739	NM_026391	ENSMUSG00000041769	Ppp2r2d	1300017E19Rik|D7Ertd753e|MDS026	protein phosphatase 2, regulatory subunit B, delta	protein-coding	2.6740242268475	2.5342334226076	2.46416822916441	2.64059335972957	2.65959467484357	2.78048916362894	2.78700026357881	2.90875433746006	0.967406506880062	0.138768300792675	0.414381792154761
Merged-chr14-121894685-4	chr14	121894569	121894769	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 1 of 8)	intron (NM_026861, intron 1 of 8)	-15261.0	NR_130999	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	5.25441582283423	5.15533929634648	5.15606377723504	5.43331850083425	5.75482256928353	5.5502001538765	5.13104218055857	5.37292526476095	0.381793655614209	0.214949692340664	0.520943309804269
Merged-chr2-91265743-2	chr2	91265698	91265898	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023854, intron 2 of 15)	intron (NM_023854, intron 2 of 15)	683.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	2.68131711988354	2.5428068141961	2.6104416727225	2.64440081388767	2.76501009100876	3.15614606640174	2.80322733501374	2.98774856722484	1.43725654423315	0.025172533107413	0.149138982358295
Merged-chr1-95653726-3	chr1	95653596	95653796	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009183, exon 3 of 5)	exon (NM_009183, exon 3 of 5)	13898.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	3.75182677405276	4.20507124293235	4.02923554910338	4.04855574712306	3.42060825897143	3.29820381413671	3.45364980322736	3.58593029635419	-1.85442762140671	0.000326937425613075	0.0054435272556054
Merged-chr11-49845374-4	chr11	49845286	49845486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1365.0	NM_001163671	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	5.43830382599054	5.46403176357289	5.24382140609385	5.43862497945131	5.67223320420461	5.64614525441733	6.03789466267109	6.04639476465239	0.764484784881077	0.00530404967821876	0.0496973839331986
Merged-chr1-89876817-4	chr1	89876722	89876922	+	876.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 15 of 16)	intron (NM_001037136, intron 15 of 16)	54354.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	4.25914746703642	4.38475284522362	4.350059934906	5.05773264063999	4.20046248406037	4.12759788934818	4.24120450924981	4.20966183974569	-0.908743703148172	0.0380299415927302	0.195249077656444
Merged-chr6-35597255-4	chr6	35597136	35597336	+	880.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57348.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	3.39886396676546	4.17558851782818	3.7084626050665	3.8090251265416	3.9803873102912	3.82767911382419	4.02807824121942	3.59126403200993	0.181208328985058	0.722859512429281	0.88928524667289
Merged-chr2-144698193-4	chr2	144698092	144698292	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	98239.0	NM_025314	66044.0	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DTD|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	5.7504039425678	5.646681521058	6.36900534368747	6.36497856118172	4.93420533134338	5.16990816030686	5.45546736886824	5.59333406699802	-1.30336570942646	8.19429980003545e-05	0.00171547666313742
Merged-chr12-119484144-4	chr12	119484030	119484230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40720.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	7.22062288250499	7.46872258577577	7.25634191103015	7.53242467192951	7.86273690745529	7.99125608554662	7.42781030308783	7.56974271203483	0.460675385322395	0.023207383884478	0.141174119948146
Merged-chr4-53049630-2	chr4	53049530	53049730	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 36 of 49)	intron (NM_013454, intron 36 of 49)	37750.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	2.52175368876922	2.44920922197023	2.45091713309254	2.42571817244143	2.50518415301652	2.69635576290093	2.92014171058398	2.6524251262346	1.23519005549982	0.0664266681461353	0.274700389356906
Merged-chr7-43667239-5	chr7	43667171	43667371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAT)n|Simple_repeat|Simple_repeat	-4760.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	5.02016920436141	5.58294538878818	6.00283654536252	5.07707908534996	5.7566930960553	5.42562990795508	5.62648175034899	5.92034570509055	0.375176955915211	0.275320211290117	0.58708236946753
Merged-chr16-93914449-4	chr16	93914389	93914589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15078.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	6.36674734612848	6.51636056490727	6.00356009404944	5.63741401642866	7.66943722219142	7.31302406175	7.47873278676872	7.20419674166824	1.79406406637297	3.46273427077376e-12	3.39028834469608e-10
Merged-chr1-156442288-4	chr1	156442169	156442369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 6 of 15)	intron (NM_009230, intron 6 of 15)	-21354.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	5.26624940173483	5.50779649340114	6.16287342311563	6.1739800147444	5.55585870837056	5.34055455891529	5.67958329260127	5.72921570615257	-0.437548382091955	0.183460546798821	0.480499623232633
Merged-chr18-75895944-4	chr18	75895854	75896054	+	856.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 1 of 4)	intron (NM_145356, intron 1 of 4)	75776.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	4.38939675300411	4.55205088084642	4.76187877498466	5.10407743068206	4.51768821055835	4.52038233315249	4.73911876880415	4.64647331194747	-0.311469529261078	0.420452811466747	0.713274332060183
Merged-chr2-158163248-4	chr2	158163157	158163357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR67B|LTR|ERVL	-16865.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	5.18330981410512	5.29041768637783	5.46696569380589	5.68839314022898	5.6415375345714	5.36254441088334	5.49436289746015	5.76236660726337	0.23417856583521	0.430091188564702	0.720740306563559
Merged-chr5-22549428-4	chr5	22549340	22549540	+	908.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102315)	promoter-TSS (NR_102315)	891.0	NM_011959	26429.0	Mm.412217	NM_011959	ENSMUSG00000029012	Orc5	AL033327|MmORC5|Orc5l	origin recognition complex, subunit 5	protein-coding	4.22383332042092	4.09866026089027	4.22446500549624	4.9497349679976	3.89554115439367	4.40162535160609	4.54418875327245	4.6705442206529	-0.0707631286900175	0.883104297007907	0.955978902205615
Merged-chr7-25127946-2	chr7	25127846	25128046	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 1 of 13)	intron (NM_001163556, intron 1 of 13)	4514.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	2.96406938721726	2.85977799327747	2.70301959427136	2.6680996925579	2.91723684010196	3.19005507830439	2.89326320457506	2.90231221122544	0.80609295863936	0.187997061397304	0.486491777546671
Merged-chr2-152802380-4	chr2	152802281	152802481	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	B2_Mm2|SINE|B2	26108.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	6.21328760382873	6.1926858183757	6.54573393295823	6.27026831469567	5.97874837682532	5.33519834045266	5.44685032375829	5.50221081008781	-1.11091384360672	0.000102586281461371	0.00207207404317223
Merged-chr7-141263910-2	chr7	141263810	141264010	+	621.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252600, exon 7 of 9)	exon (NM_001252600, exon 7 of 9)	2514.0	NM_001252601	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	2.52231040660684	2.43383184201988	2.52264474742905	2.07769450961947	2.41809884590375	2.42222010293518	2.31105216438576	2.64188882863405	0.308091869772932	0.689044355493052	0.873083901729238
Merged-chr14-93674950-4	chr14	93674854	93675054	+	939.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	215715.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	4.99473641213332	5.08088807940278	5.11870614094047	5.35261322556879	4.7247847695513	4.3537462589145	4.68425882489042	4.33152238278709	-1.25155301794867	0.000523720130748493	0.00801502369093678
Merged-chr13-59820340-4	chr13	59820241	59820441	+	830.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 2 of 27)	intron (NM_153538, intron 2 of 27)	2806.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	3.94267376205914	3.8665550517804	3.73881791063735	3.54583822452243	4.23014882255886	3.8588449805543	4.01617569504244	3.68034483611988	0.56861468775	0.225948759218348	0.534543381939136
Merged-chr6-145126548-3	chr6	145126455	145126655	+	623.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008511, intron 1 of 18)	Lx9|LINE|L1	4816.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	3.81541523821114	3.44494654311905	3.6328706096587	3.6117584727823	3.27013773640184	3.1251133598318	3.34703141690628	3.63068595069863	-0.937644182420504	0.0837412763765855	0.31462121220434
Merged-chr11-16967966-4	chr11	16967823	16968023	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16513.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	4.63422592348047	4.61238465939202	4.21273464954512	4.71809781112805	4.36120780154149	4.48331637006804	4.24356490735472	4.21027025438256	-0.558024215414778	0.151628240259303	0.435362001118241
Merged-chr6-124857608-3	chr6	124857507	124857707	+	872.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013534)	promoter-TSS (NM_013534)	80.0	NM_013534	14789.0	Mm.35708	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	3.41879740686331	3.4767454898596	3.30449609268457	3.56422237137166	3.32082144461334	3.35400983287445	3.40611465546137	3.41741438859879	-0.281179436196078	0.58265230298023	0.816711466597672
Merged-chr8-122407837-4	chr8	122407761	122407961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029993, intron 10 of 18)	intron (NM_001029993, intron 10 of 18)	-14159.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	6.68469701883996	6.58426891199533	7.32190407178167	7.15877520576303	6.3764263498269	6.22313531199801	6.87506221565903	7.00394164148639	-0.449264617624826	0.107187786614654	0.361194880625122
Merged-chr8-24438411-3	chr8	24438303	24438503	+	991.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026931, exon 1 of 1)	3' UTR (NM_026931, exon 1 of 1)	543.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	4.24329368448881	4.73705413196094	4.67851907688111	4.20392557845704	4.02564740813519	4.41906815467829	4.17792710498197	4.14382594793274	-0.695935546480566	0.0999815196355081	0.346845919979327
Merged-chr8-111034482-2	chr8	111034382	111034582	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146217, intron 1 of 20)	B1F|SINE|Alu	640.0	NM_146217	234734.0	Mm.24174	NM_146217	ENSMUSG00000031960	Aars	AI316495|C76919|sti	alanyl-tRNA synthetase	protein-coding	3.47129568435015	3.55280458471027	4.0075359074888	3.81449272812238	3.47279618155168	3.64716441060448	3.57343056197638	3.58541313280435	-0.516291330119381	0.300457317048414	0.612432455247845
Merged-chr12-12263580-4	chr12	12263484	12263684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	1445.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	5.56217425462522	5.20197734431804	5.33642065285334	5.17162776700544	5.80996522165445	5.51238326116333	5.6575835857809	5.42246350978317	0.533243897518347	0.0625791194606298	0.265011848172785
Merged-chr15-101173967-4	chr15	101173910	101174110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007395)	promoter-TSS (NM_007395)	-62.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	6.36810068993258	6.87171433729495	5.77114281047887	6.25130676425432	6.80859383810579	6.6345383179706	6.81673141816171	6.24938175611402	0.3967475068481	0.173667389810489	0.467759153113134
Merged-chr7-30992341-3	chr7	30992233	30992433	+	806.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	10412.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	2.96198925394401	3.10278464230061	3.02138344554308	3.27570265725792	2.83686291038744	2.64101017222704	2.89099038260807	2.96089331610036	-1.17902845149467	0.0664579801453318	0.274775961874103
Merged-chr15-81046338-4	chr15	81046261	81046461	+	866.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	58686.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	4.10874383982334	4.67410905259673	4.39154061111132	4.2636532644162	4.01007945955303	4.28788113535653	4.49104594290212	4.5838908578301	-0.0467152144258625	0.911536044603579	0.96695373445261
Merged-chr4-101174553-4	chr4	101174457	101174657	+	779.912476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 9 of 24)	intron (NM_146145, intron 9 of 24)	90725.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	4.35153585676647	4.13073593791081	4.17817865511912	4.44936433714163	4.10362462409941	4.04406117177337	4.48345688567467	4.02790324220834	-0.285982612955352	0.492654628314243	0.763658218913778
Merged-chr3-105712054-3	chr3	105711958	105712158	+	649.399963	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163356, intron 1 of 1)	intron (NM_001163356, intron 1 of 1)	6600.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	3.98002512346831	3.29119339726949	3.63841554863593	3.63813229948317	3.63946165324296	3.69990495116346	3.73013752156114	4.1001609862115	0.437549931759556	0.39242151671271	0.691933206965634
Merged-chr2-48694741-4	chr2	48694639	48694839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119370.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	5.91820783495094	5.51049753881317	5.68097254394063	5.98060046703123	5.91809774236816	5.72000513739838	5.79964825985746	5.82513428291351	0.0391564609710462	0.882582101928446	0.95575354370667
Merged-chr12-32199611-4	chr12	32199523	32199723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020272, intron 4 of 10)	intron (NM_020272, intron 4 of 10)	8715.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	5.73202067144931	5.63681642636935	5.95946708690663	6.30481070593683	5.59058637651544	5.75150064827714	5.51847426460632	5.39028301209326	-0.636017957212537	0.0298110370399585	0.16652957192491
Merged-chr2-113848845-6	chr2	113848738	113848938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181416)	promoter-TSS (NM_181416)	-177.0	NM_181416	228482.0	Mm.45753	NM_181416	ENSMUSG00000041219	Arhgap11a	6530401L14Rik|mKIAA0013	Rho GTPase activating protein 11A	protein-coding	5.6128160307406	5.58742497138426	5.96637795161507	5.2130378595554	5.16328670923083	5.59775427177282	5.39456269388422	5.5841150203603	-0.291166696473009	0.357161589889731	0.663385811659022
Merged-chr3-65952081-4	chr3	65951960	65952160	+	771.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019937, intron 3 of 10)	intron (NM_019937, intron 3 of 10)	6189.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	4.06175477747051	3.62701364635206	4.23131550860914	4.13613056049451	4.05275694540162	3.93414395699897	3.85181606911125	3.86519960153922	-0.279503160419775	0.540626338256154	0.792829019929487
Merged-chr13-42301416-4	chr13	42301302	42301502	+	982.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010104)	promoter-TSS (NM_010104)	-74.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	4.63710915477705	4.57879142901855	4.46553141434731	4.83684642729572	4.62537452379655	4.72963602253656	4.83584532014391	4.92194658367377	0.260675114494764	0.459469290669768	0.742003916884095
Merged-chr17-43016519-4	chr17	43016429	43016629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178589)	promoter-TSS (NM_178589)	-26.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	6.97776257174872	7.34763402460836	7.10684429784071	7.46301235356169	7.35446399593809	7.24728979209048	7.46324168017333	7.34430353778712	0.137603375578975	0.488128023261376	0.761138813698771
Merged-chr4-42987582-4	chr4	42987491	42987691	+	952.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009503, intron 7 of 16)	RLTR12B|LTR|ERVK	12916.0	NM_009503	269523.0	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	4.24804240517552	4.6743659404499	4.51815414316264	4.56189412238459	4.71802915796558	4.03496287438225	4.64834895077693	4.55508397110529	0.0225157310095808	0.955406899168425	0.984123580734412
Merged-chr12-79190980-4	chr12	79190906	79191106	+	998.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362269)	promoter-TSS (NM_001362269)	-45.0	NM_001362269	17252.0	Mm.291799	NM_021557	ENSMUSG00000066441	Rdh11	2610319N22Rik|AI428145|AU045252|Arsdr1|C85936|CGI-82|HCBP12|M42C60|Mdt1|Psdr1|SCALD|UBE-1c1|Ube-1c|ralR1	retinol dehydrogenase 11	protein-coding	5.45474244471798	5.79449768141217	5.58940864604778	5.40842934792663	5.53697602348971	5.12517342944229	5.5097076928142	5.27041618540719	-0.318353386250781	0.279191351728766	0.591369431345506
Merged-chr5-77194129-3	chr5	77194026	77194226	+	795.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	17079.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	3.29672928209635	3.31096026690281	3.48829327829165	3.2424367756706	3.69385042197239	4.10323346525717	3.78673089485969	3.75418382331168	1.62450294416779	0.000896210329319854	0.0123459173661037
Merged-chr2-18816198-4	chr2	18816082	18816282	+	932.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14364.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	4.32828230004163	4.06611545394696	4.7168820836327	4.80107926870138	4.11579909963665	4.03076500361321	4.75800293216192	4.32624808521355	-0.414788258581443	0.362943555674909	0.668158239901494
Merged-chr10-118867386-3	chr10	118867267	118867467	+	912.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	1536.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	3.84033952683832	3.79478758674794	4.18074739205355	3.80102211836181	3.95826727115551	4.39102980855795	4.20298758856479	3.94505315788464	0.60216339746556	0.171663470248035	0.465054203729348
Merged-chr11-69095871-4	chr11	69095736	69095936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3113.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	5.06517855055676	4.77799102304389	4.8906918619667	4.8934812540975	5.10799296139215	5.10200134423712	5.07346064077574	5.32547821525617	0.481716857282983	0.118454108993312	0.380772479972676
Merged-chr10-88376939-4	chr10	88376847	88377047	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41B|LTR|ERVL	-2465.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	5.0853345259856	5.36999735186727	5.08618450492596	5.12441172458525	5.45418511540984	5.32750589417406	4.91698876758116	5.27430120513609	0.173622375382751	0.575761396253541	0.813185666420437
Merged-chr7-127270482-4	chr7	127270410	127270610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3549.0	NM_009266	20768.0	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	6.31604904222793	6.26316327767582	6.2991850271891	6.27106879057356	6.31382931252453	6.12371809290833	6.02971672350764	6.12022894790627	-0.190701445283561	0.397540821249228	0.695931089908973
Merged-chr3-135691497-4	chr3	135691399	135691599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008689)	promoter-TSS (NM_008689)	48.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	7.23738214675708	7.46581203729622	7.32508256517892	6.80189029267688	7.61822373467901	7.83870730558904	7.67100626945059	7.15275775645607	0.498203077040326	0.0315305105135034	0.173084267517225
Merged-chr11-97309534-4	chr11	97309422	97309622	+	971.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6194.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	6.19875380263554	6.05471910965087	6.40559486017452	6.04968637409022	5.09926299521373	5.31455479740793	5.02242622638876	5.55937918363309	-1.54658816556143	7.17938497590541e-08	3.1661799454769e-06
Merged-chr14-26765085-4	chr14	26764981	26765181	+	923.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR50A|LTR|ERVK	-95235.0	NM_178668	211948.0	Mm.290758	NM_178668	ENSMUSG00000043702	Pde12	2'-PDE|E430028B21Rik	phosphodiesterase 12	protein-coding	4.59332777402933	4.93499362844489	4.86769357648634	4.31643590321079	4.50842663057507	5.20306619994873	4.91190158870503	4.89906529523018	0.424184919782554	0.271499537726091	0.583222139604812
Merged-chr15-58135144-4	chr15	58135042	58135242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027435)	promoter-TSS (NM_027435)	-60.0	NM_027435	70472.0	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	8.03713397010507	8.14631738468454	8.25925747238501	7.93104693472038	8.28124003837915	8.26862306986067	8.12724720450408	8.01961370502571	0.112437414678257	0.503089133644483	0.770193604415207
Merged-chr10-8842984-3	chr10	8842888	8843088	+	937.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	43082.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.93362303461909	3.93394245945897	3.93421062348814	4.14065877273637	3.95451786710413	3.8504306393405	3.54407751353869	3.49063390475754	-0.753305410181494	0.117691409141789	0.37943458697814
Merged-chr11-34737417-4	chr11	34737308	34737508	+	860.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 2 of 51)	L1M3|LINE|L1	46497.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	3.93394039631835	4.23302268648787	3.98788713881135	4.62322307803213	3.98846893478954	4.00074132105	4.29060053574756	4.17945270385737	-0.320948781028934	0.48182222821525	0.75682719589834
Merged-chr4-150015592-2	chr4	150015487	150015687	+	694.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6564.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	3.0222486167749	2.97658786965128	2.89608661169499	3.09945541124021	3.02810877238364	3.1905608844791	3.07021016208334	3.02113249489537	0.282397798259819	0.621977486521089	0.838130618172061
Merged-chr2-181659366-4	chr2	181659286	181659486	+	930.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12254.0	NM_009236	20672.0	Mm.264904	NM_009236	ENSMUSG00000046470	Sox18	AI385749|Ra|Ragl	SRY (sex determining region Y)-box 18	protein-coding	4.52311890992435	4.7844453171755	4.15108760748999	4.66102861086294	4.58186251446546	4.57017474064767	4.28514538171194	4.4798470438354	-0.164516795557696	0.672815245574154	0.865428204737913
Merged-chr4-154864407-4	chr4	154864302	154864502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_154548, exon 5 of 5)	non-coding (NR_154548, exon 5 of 5)	-5183.0	NM_013783	27390.0	Mm.116944	NM_013783	ENSMUSG00000058183	Mmel1	Mell1|NEP2|NEPII|Nl1|SEP	membrane metallo-endopeptidase-like 1	protein-coding	5.8341279486749	6.14587667520155	5.56717749060529	5.95559277741418	5.81633219882287	6.08075721355048	6.00499139781997	6.01078771774913	0.116126906903884	0.654831254212688	0.855720388544032
Merged-chr6-71823746-4	chr6	71823653	71823853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025430)	promoter-TSS (NM_025430)	31.0	NM_025430	66223.0	Mm.28579	NM_025430	ENSMUSG00000052962	Mrpl35	1110066C01Rik	mitochondrial ribosomal protein L35	protein-coding	5.83047359521664	5.5774207989447	5.76195299550684	5.67521349653986	5.95624061519464	5.81177937435641	5.31580506119786	5.57905408062221	-0.0181112005148193	0.948752463943125	0.981573157037278
Merged-chr12-104131253-4	chr12	104131163	104131363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173024, intron 2 of 4)	intron (NM_173024, intron 2 of 4)	3267.0	NM_173024	271047.0	Mm.120265	NM_173024	ENSMUSG00000066364	Serpina3b	6A1|A030003A19Rik	serine (or cysteine) peptidase inhibitor, clade A, member 3B	protein-coding	6.74640964734104	6.8109481441436	6.83209015385026	6.83203530792863	6.57638009455893	6.59498978739797	7.06377122463039	6.81356185778781	-0.0484004218247762	0.819913363291883	0.93105857001616
Merged-chr15-4821317-4	chr15	4821186	4821386	+	814.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-77451.0	NM_001166066	223825.0	Mm.159281	NM_001166066	ENSMUSG00000022155	Mroh2b	4930455B06Rik|Heatr7b2|SPIF	maestro heat-like repeat family member 2B	protein-coding	4.16746267383576	4.54436409025923	4.37754736318122	4.16599523808758	3.85958366951568	4.24773632739461	3.95557378608615	3.73962895148415	-0.944997886065963	0.0323806724786744	0.176196306578974
Merged-chr17-43576534-4	chr17	43576436	43576636	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	8085.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	6.03121975315162	5.47621794322997	5.91878102813575	5.5580768607194	5.30183721437663	5.05343849966644	5.26124988547947	5.34748369315233	-0.878672617330402	0.00374929672621236	0.0380700701390969
Merged-chr17-28800883-4	chr17	28800710	28800910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081315)	promoter-TSS (NM_001081315)	-316.0	NM_001081315	268936.0	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	5.52469875802044	5.45587894172163	5.39654247083306	4.85736775614236	5.29113338077428	4.87202225737677	5.06532805424942	5.24889212180804	-0.335383438269578	0.324975256330908	0.636488090877592
Merged-chr5-29972964-4	chr5	29972870	29973070	+	944.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40144.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	4.86702518598827	5.15551562336591	4.86783480060177	4.37681593909103	4.92930910944756	4.62910908541086	4.9469641742119	5.00057246378968	0.107973418273292	0.772267498223447	0.910810383351782
Merged-chr11-20631909-4	chr11	20631777	20631977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038625)	promoter-TSS (NM_001038625)	-100.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	8.35269877704792	8.52101882870121	8.53366652147996	8.33408615887627	8.53700462532998	8.59087522313854	8.76706775944364	8.48435112758911	0.205636354629568	0.188321449591235	0.486898830868141
Merged-chr4-36158421-3	chr4	36158330	36158530	+	733.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 4 of 8)	intron (NM_001166000, intron 4 of 8)	-313226.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	3.93360331098013	3.90400239577963	4.11701091405798	4.44073138132614	3.46677767409504	3.58558614735553	3.91737843235592	3.97997806403881	-1.06835111891901	0.0317421084388516	0.173784442471273
Merged-chr10-128298961-4	chr10	128298860	128299060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031252)	promoter-TSS (NM_031252)	-876.0	NM_031252	83430.0	Mm.125482	NM_031252	ENSMUSG00000025383	Il23a	IL-23|p19	interleukin 23, alpha subunit p19	protein-coding	6.38516800704352	6.68986403260445	5.86064686935194	5.79087846372668	6.91400663182487	7.12921550019079	6.24133564999103	6.30780797723177	0.69091573279468	0.030594560215075	0.169443682037724
Merged-chr6-119472398-3	chr6	119472294	119472494	+	611.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	ERVL-int|LTR|ERVL	-5183.0	NM_001271758	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	3.64791269396305	3.62858608332141	3.30958032099945	3.05769890120547	3.781897829669	3.54888884346917	3.63267212107292	3.43068293849634	0.599923168991544	0.271539402467761	0.583247666197459
Merged-chr19-55774589-3	chr19	55774498	55774698	+	818.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	32788.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.33165959166034	2.88356219176173	3.2196801222978	3.06758134985864	3.36261339555915	3.44670353130498	3.26420765868003	3.15800372610037	0.684952039017854	0.222142371628684	0.530130494377319
Merged-chr11-54860713-4	chr11	54860597	54860797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029327)	promoter-TSS (NM_029327)	-106.0	NM_029327	75530.0	Mm.83578	NM_029327	ENSMUSG00000020268	Lyrm7	1700024C24Rik|9330147L21Rik	LYR motif containing 7	protein-coding	8.29165086698313	8.13856558401817	8.22525111854635	7.99980317611241	8.22783655018318	8.33125420409146	8.12110246703044	7.94884338002421	0.00485730475454234	0.977229680057936	0.991888117862217
Merged-chr17-26663108-4	chr17	26662991	26663191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13305.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	6.90222557306452	7.03996824450499	6.40193008876315	6.78285372261674	6.79330230577322	6.80730202089863	6.76099130012509	6.91139317536345	0.0184445764684337	0.932665737893747	0.975722604390767
Merged-chr5-90900386-4	chr5	90900274	90900474	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3525.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	4.77326031938451	5.03398937965185	5.05262107558643	4.93575971626671	5.06814345104199	4.82844689662531	4.54300326152873	4.80921545721373	-0.232467929356188	0.494732608064919	0.76526357035537
Merged-chr10-79857697-4	chr10	79857660	79857860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077363, intron 2 of 13)	intron (NM_001077363, intron 2 of 13)	-2789.0	NR_029447	414101.0	Mm.401339	NR_029447	ENSMUSG00000091994	E130317F20Rik	-	RIKEN cDNA E130317F20 gene	ncRNA	7.40206479385717	7.60210826442414	7.48777525678456	7.14883959578769	7.31821547658415	7.42575500654715	7.40469140142251	6.94772937186407	-0.167735206233541	0.417891351075446	0.711553919053636
Merged-chr14-47335020-3	chr14	47334937	47335137	+	850.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36763.0	NM_001360542	218975.0	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	3.88684514889641	3.97092600990224	3.61774202131798	3.7688236342712	3.85901985091224	3.79451624384126	3.87097309355718	4.02311441264997	0.208277400548118	0.64024577508016	0.848037046355902
Merged-chr5-91000133-4	chr5	91000021	91000221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026788, intron 6 of 7)	intron (NM_026788, intron 6 of 7)	-27396.0	NM_053087	71920.0	Mm.197319	NM_053087	ENSMUSG00000035020	Epgn	2310069M11Rik|epigen	epithelial mitogen	protein-coding	5.68843277948906	5.63104073496676	5.95378273065383	6.10953246611485	5.8873765897467	5.81219097547141	6.00675132705371	5.94953648305142	0.0601790312643634	0.818923417335098	0.930617375351155
Merged-chr3-97238683-4	chr3	97238575	97238775	+	951.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-11311.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	4.52619486165869	4.59411527512057	4.52689425414192	4.75561930038953	4.77204253369554	4.90549764228915	4.67214519732731	5.11848747965118	0.532209795616173	0.127765962910255	0.397718218286463
Merged-chr5-137825271-4	chr5	137825157	137825357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153510, intron 4 of 6)	intron (NM_153510, intron 4 of 6)	11021.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	6.3467930624423	6.47286182024696	6.11334232677761	6.45115196745555	6.38113972938691	6.43120055638843	6.0387615126808	6.19203736450941	-0.134212403437964	0.567403778809606	0.808229609203301
Merged-chr15-89453516-4	chr15	89453426	89453626	+	837.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021921)	promoter-TSS (NM_021921)	-385.0	NM_021921	60597.0	Mm.173337	NM_021921	ENSMUSG00000022619	Mapk8ip2	3230402N03Rik|AI847694|AW049958|IB2|Jip2|R75148	mitogen-activated protein kinase 8 interacting protein 2	protein-coding	3.99859849150942	3.84685999443074	4.22899672984129	4.11931793564162	4.3690337390716	3.95971172265039	4.03143395460949	4.18361868987389	0.252098119443634	0.554643051693603	0.800968527998113
Merged-chr1-60960719-4	chr1	60960631	60960831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17183.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	5.57782557917374	5.52692375579756	5.46645898302729	5.93866056533666	5.82071494571166	5.52088742278963	5.57718043684927	5.49165593372051	-0.0732020537013347	0.799036846696325	0.922381586635156
Merged-chr16-43966504-2	chr16	43966404	43966604	+	997.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12546.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	2.55577918515281	2.46809759392364	2.78322386658167	2.3900888775629	2.33561296083562	2.38248399304834	2.41776577713126	2.35386221677561	-1.04139096018509	0.157396977602997	0.443925960645233
Merged-chr17-86788520-3	chr17	86788428	86788628	+	902.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010137, intron 1 of 15)	intron (NM_010137, intron 1 of 15)	34664.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	3.37236022868025	3.10137834068138	3.27090225858211	3.32521045009305	3.03458779297808	3.01197693060846	3.08971592177716	2.90358514371509	-1.05767021153352	0.0690062546132277	0.280754283916258
Merged-chr15-62104800-4	chr15	62104697	62104897	+	976.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	65540.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	5.90120200750996	5.43053139259175	6.1275948337231	6.19551446758598	5.31955932980723	5.02979738205198	5.10790709416431	5.23734661397816	-1.32032758837275	2.63796190251973e-05	0.000650164439956552
Merged-chr10-42762334-4	chr10	42762225	42762425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359285, intron 1 of 19)	intron (NM_001359285, intron 1 of 19)	829.0	NM_153055	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	5.60322623706007	6.39530878967046	5.95710345353928	5.17125240475848	5.50082865736406	5.66906911774636	5.65409100070777	5.45702024665402	-0.47037735634116	0.175043875719928	0.469760133841147
Merged-chr19-6857486-4	chr19	6857355	6857555	+	866.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081291, exon 3 of 27)	exon (NM_001081291, exon 3 of 27)	756.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	3.13708688006534	3.42908230809959	3.43309252016038	2.58791404955837	3.61017390891075	3.43976178598858	3.19027642103113	3.377044974116	0.747630475097881	0.26473405529166	0.576566406596513
Merged-chr1-156681393-1	chr1	156681293	156681493	+	1000.0	f1_c57bl6.idr	3' UTR (NM_145413, exon 8 of 8)	3' UTR (NM_145413, exon 8 of 8)	-7054.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	3.07540702468252	2.91210076613151	3.33070881552027	3.00941820485172	2.66817667030696	2.93580093921388	2.88434261528253	2.82623093836308	-1.16959605390098	0.0664895676198154	0.27483512971027
Merged-chr2-147014431-3	chr2	147014321	147014521	+	693.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356402, intron 1 of 28)	B1_Mur1|SINE|Alu	1422.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	3.68117980263723	4.04907779476429	3.68171125612505	3.45874191171659	3.52264405651383	3.69243277305656	3.38429861804083	3.51588177562253	-0.628048494787713	0.222989826478471	0.531069778572449
Merged-chr10-56163171-3	chr10	56163062	56163262	+	646.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033385, intron 15 of 32)	intron (NM_001033385, intron 15 of 32)	56245.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	3.23648134746152	3.319581791468	3.60528953488272	3.43226611061668	3.76824543306936	3.72364964129665	3.87407464203385	3.75458246965332	1.17872785224616	0.0155091441724268	0.107396183777524
Merged-chr7-126746275-4	chr7	126746163	126746363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-13363.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	7.25293962863726	7.05982069188786	6.80963655298727	6.98033981771699	6.90100486189202	7.27613261690108	7.29815053650363	7.14063354262817	0.168856600219809	0.413037990851194	0.708015392322443
Merged-chr17-86978670-4	chr17	86978581	86978781	+	980.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	ORR1A4|LTR|ERVL-MaLR	15570.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	5.56680693790388	5.37659630271731	5.31561529405535	5.43814783301057	5.42812684564777	5.06046465052751	5.74796478535753	5.37241772801233	0.00285139036994123	0.992362702808987	0.997181969693525
Merged-chr12-84614739-4	chr12	84614629	84614829	+	950.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008992, intron 3 of 18)	intron (NM_008992, intron 3 of 18)	2737.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	5.22217440561436	4.90124287024742	4.9438283567989	4.98590050571279	4.89787554711759	5.0818045321669	4.77420827413831	4.58274310729667	-0.335875321223598	0.314752651944672	0.62673172609645
Merged-chr4-122995581-4	chr4	122995471	122995671	+	853.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303121)	promoter-TSS (NM_001303121)	-360.0	NM_001303121	16918.0	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	3.86265385048807	4.06014260449158	4.1558327138484	4.12673881350909	3.87030580764304	3.86903010966062	4.13720107069192	4.27744614385467	-0.038508051409519	0.929044833891703	0.974317157505369
Merged-chr12-100022250-4	chr12	100022152	100022352	+	862.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	ID2|SINE|ID	57753.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	4.45939655676334	4.08437004351249	4.03232285507242	3.80391980395972	4.40320943842507	4.15706254989755	4.24466217689214	3.97826683462881	0.274783982445677	0.534111920356315	0.789066961676578
Merged-chr11-60333338-3	chr11	60333255	60333455	+	907.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359810, intron 1 of 12)	intron (NM_001359810, intron 1 of 12)	19550.0	NM_153080	216810.0	Mm.218875	NM_153080	ENSMUSG00000000538	Tom1l2	2900016I08Rik|A730055F12Rik|AU042072|Srebf1	target of myb1-like 2 (chicken)	protein-coding	3.66105919593524	3.57808797838576	3.66155164904604	3.85236785013718	3.93689975043083	3.39485932013222	4.17457220324169	3.71358274793895	0.409535701212313	0.420839360576112	0.71358627963331
Merged-chr12-70969960-4	chr12	70969861	70970061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4662.0	NM_001310595	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	5.55425457053395	5.66370947461077	5.55522238032361	5.1365990268444	5.48611525498632	5.83239462976173	5.63016718437027	5.62977918430273	0.290394789922509	0.317684131219809	0.629592752581639
Merged-chr9-114730342-4	chr9	114730223	114730423	+	913.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026036)	promoter-TSS (NM_026036)	-880.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	4.0342427292037	4.34238345621588	4.31505967076705	4.15149683799586	4.24800709525469	4.21031460852928	4.20965328431046	4.31232335570597	0.0812483194369327	0.835973584328848	0.937569151339979
Merged-chr6-17542633-3	chr6	17542543	17542743	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008591, intron 12 of 21)	intron (NM_008591, intron 12 of 21)	78686.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	4.95644582276556	5.10040584990629	5.21824655938071	5.80053319289758	3.94691616776333	3.78656497543962	4.11824086309255	4.01039545751921	-3.20421771995393	6.52080612725684e-12	6.08315149845366e-10
Merged-chr1-153969361-3	chr1	153969264	153969464	+	611.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	69435.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	3.54711236550112	3.35750418995538	3.7267774412635	3.50005297438865	2.90507112605792	3.13195202665394	2.93868286422777	3.27910803253644	-1.8636833408751	0.00209476844428004	0.0242365934810483
Merged-chr4-95303517-4	chr4	95303410	95303610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-251288.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	6.09126275965684	5.57559121006384	5.72401489939559	6.00912444465522	6.35358963490878	5.92781379668444	6.11928423272039	5.93995226233121	0.368431331280813	0.169048443557901	0.46161486940974
Merged-chr14-75185980-4	chr14	75185904	75186104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	49579.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	6.00462905096478	6.57334112449681	6.02761483477216	5.55947283251254	6.43358220515779	6.34650780256522	5.75990566349545	5.86140744132654	0.0789023324711747	0.805871077973582	0.925317663285668
Merged-chr5-103691712-4	chr5	103691607	103691807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35975.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	6.06363759132556	5.93805796687277	5.99486372436485	6.42537947049455	6.67671756497481	6.57694512881971	6.54540023387808	6.61878608093828	0.685405844195026	0.00423705848162637	0.0419515350763226
Merged-chr12-34779529-3	chr12	34779438	34779638	+	771.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	137557.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	3.3391837382109	3.43870958304639	3.45954293087398	3.83637068624296	3.55525848260163	3.57368180750928	3.44679848146083	3.66832647856136	0.0349157009055319	0.946759698446214	0.98095209334417
Merged-chr13-23581028-2	chr13	23580928	23581128	+	988.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175654)	promoter-TSS (NM_175654)	-574.0	NM_175654	319156.0	Mm.260530	NM_175654	ENSMUSG00000061482	Hist1h4d	-	histone cluster 1, H4d	protein-coding	3.65028200061946	3.895176282532	3.65077617731789	3.37160065198938	3.81121457448945	3.92866804738215	3.79148672115945	3.75533845475181	0.536927044236057	0.261001820906906	0.572926972283513
Merged-chr15-58933293-4	chr15	58933205	58933405	+	873.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023172)	promoter-TSS (NM_023172)	425.0	NM_175151	69694.0	Mm.383230	NM_175151	ENSMUSG00000050891	Tatdn1	2310079P03Rik|CDA11	TatD DNase domain containing 1	protein-coding	4.36868237918718	4.39452838685714	4.45077234240947	4.11577556976835	4.251621986431	4.31556801463873	4.21821767569228	4.40788238190343	-0.0631271939171614	0.871442772537243	0.951627503185851
Merged-chr8-22124424-3	chr8	22124337	22124537	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177898, intron 1 of 19)	intron (NM_177898, intron 1 of 19)	630.0	NM_177898	330721.0	Mm.113940	NM_177898	ENSMUSG00000037738	Nek5	6530411J22|BB049667	NIMA (never in mitosis gene a)-related expressed kinase 5	protein-coding	4.50313299366763	4.4230909761618	4.22803498150484	4.30370696479519	3.7445820395412	4.31027843469578	3.86120856721114	3.87410845389327	-1.07350025672828	0.0142841604470425	0.101348909136766
Merged-chr1-52500027-4	chr1	52499924	52500124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008667, intron 1 of 7)	intron (NM_008667, intron 1 of 7)	424.0	NM_008667	17936.0	Mm.25903	NM_008667	ENSMUSG00000002881	Nab1	-	Ngfi-A binding protein 1	protein-coding	5.9999165278276	6.00366565580942	6.24762678761484	6.25615943132136	6.33259464339814	6.13182273986253	6.15869072928257	6.27991891307905	0.140819907221675	0.544439007992418	0.795235561549986
Merged-chr17-83215139-4	chr17	83215035	83215235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134117)	promoter-TSS (NM_134117)	-148.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	6.94288991826393	7.04194440776837	6.84907306086164	7.3087210039447	6.97879214151619	7.02576072077568	7.33510410846332	6.7118286376419	-0.0406163422436279	0.856625742819834	0.946037380962407
Merged-chr11-98774869-1	chr11	98774769	98774969	+	1000.0	f0_c57.idr	5' UTR (NM_145434, exon 1 of 8)	5' UTR (NM_145434, exon 1 of 8)	508.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	3.71527498473285	4.06925945269008	4.08343250946462	3.63443072815588	4.26235483206362	4.34102393732506	3.81641726740219	4.08088386389093	0.696243260476552	0.127870682367015	0.397906238532909
Merged-chr19-32276454-2	chr19	32276354	32276554	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168525, intron 2 of 9)	intron (NM_001168525, intron 2 of 9)	-65441.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	2.79562190830118	2.70438900591319	2.79596752816121	2.95044855196368	2.5666966190635	2.70278781263547	2.66025509616758	2.85382333680389	-0.606310721845029	0.353125290963472	0.660043199639951
Merged-chr1-131698968-4	chr1	131698882	131699082	+	958.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311096, intron 4 of 4)	intron (NM_001311096, intron 4 of 4)	10287.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	4.71694495511483	4.55689994060794	4.51937700827805	5.25255401237231	5.53885161230418	5.59255496495391	5.63413540421154	5.76586085640955	1.45383676074692	8.02389675257193e-05	0.00168529381871823
Merged-chr7-65500893-3	chr7	65500882	65501082	+	851.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81049.0	NR_131060	407810.0	Mm.249337	NR_131060	ENSMUSG00000086662	BC046251	-	cDNA sequence BC046251	ncRNA	3.50850741132516	3.27812067169457	3.74411636321682	3.84855150638919	3.04986819912221	2.96431697473183	3.38784957630358	3.28204821181339	-1.60313837031873	0.00781562677876854	0.0660855902216638
Merged-chr11-61934818-3	chr11	61934725	61934925	+	975.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-4568.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	4.3384528022154	4.36537405526003	4.11069834230602	4.39152348790567	4.50568640108458	4.13007470531922	4.04333585568162	4.24997563867236	-0.13421803729811	0.742151177323226	0.898417179766546
Merged-chr7-143784222-1	chr7	143784122	143784322	+	677.5	f0_balb.idr	5' UTR (NM_175534, exon 1 of 2)	5' UTR (NM_175534, exon 1 of 2)	278.0	NM_175534	244238.0	Mm.183561	NM_175534	ENSMUSG00000048965	Mrgpre	C130069N09Rik|Ebrt3|Mgrf|MrgE	MAS-related GPR, member E	protein-coding	3.27541776915091	2.9526741149341	3.3767134470161	3.20113072940443	3.0052153024457	3.15273210014664	3.09490272652612	3.10429011525317	-0.482525330538427	0.399947519719802	0.697998394167851
Merged-chr19-6058432-2	chr19	6058332	6058532	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026246)	promoter-TSS (NM_026246)	465.0	NM_001190436	14109.0	Mm.329631	NM_007990	ENSMUSG00000038274	Fau	MNSFbeta	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)	protein-coding	3.20860201536413	3.04687038286116	3.44977888947675	2.86228466370591	3.67596905762762	3.51149509309789	3.43539663438318	3.78423120294673	1.65479847707929	0.00316304904140419	0.0332608461690218
Merged-chr18-67933194-4	chr18	67933064	67933264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172631)	promoter-TSS (NM_172631)	-9.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	5.75103153660185	6.1537600890364	5.99118753703582	5.78585313813213	5.33503771167317	5.63448319060943	5.27015313193586	5.39107859214743	-0.87267791974544	0.00168188972349601	0.0204214072706328
Merged-chr8-36094951-5	chr8	36094818	36095018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172911)	promoter-TSS (NM_172911)	90.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	6.4116953143522	6.48999231746167	7.33194498708016	6.51393766708739	6.18009865465848	6.51642731148539	6.2865494298298	6.65383941880468	-0.467637384266577	0.0993808222178797	0.345722474201968
Merged-chr15-73148919-4	chr15	73148816	73149016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	36031.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	5.85323348368114	6.24734797633517	5.9041981080964	6.0201717014254	6.49995583773633	6.24137033662522	6.28599993756108	6.31387103415425	0.49721002142542	0.0352223243307585	0.186068711855355
Merged-chr10-94082491-4	chr10	94082384	94082584	+	917.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 3 of 20)	LTR48|LTR|ERV1	46483.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	3.91974120475785	4.64488092903702	4.38175883292311	4.30884473866361	5.28471522380476	4.46514846905575	5.24295986080025	4.9630410447779	1.44801439258974	0.000536974233203285	0.00817567677971692
Merged-chr17-45629292-3	chr17	45629195	45629395	+	919.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013767)	TTS (NM_001013767)	-27193.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	3.76116157670717	3.98280424529204	3.70776605323712	3.72257326312711	4.28506962748505	3.6480316167915	3.6933600473633	3.70575195751716	0.230426708250435	0.640605664130638	0.848234068144109
Merged-chr5-25499114-4	chr5	25499034	25499234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081383)	promoter-TSS (NM_001081383)	-351.0	NM_001081383	231051.0	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	5.87103165514392	5.78474514592316	5.91943683985237	5.84452115602517	6.11233927729739	6.267575747273	6.26573926453934	6.10868514753333	0.522403245489375	0.0243490692551851	0.145812116969252
Merged-chr9-106367183-4	chr9	106367101	106367301	+	924.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1431.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	4.11253964867712	4.35515471233876	4.6647217536017	3.94227937833491	4.20221598299092	4.5278951867928	4.64177752695954	4.43615793827852	0.405241818130564	0.339580989079863	0.648774648981312
Merged-chr2-52084354-2	chr2	52084254	52084454	+	820.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355414, intron 9 of 35)	intron (NM_001355414, intron 9 of 35)	11517.0	NM_175238	51869.0	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	2.18696123336672	2.21710495949442	2.4202588506218	2.10098054759723	2.55742772214523	2.59904021933224	2.77943247634056	2.79086763667169	2.78338148184721	0.000246315280304737	0.00430857170532954
Merged-chr8-120576494-3	chr8	120576387	120576587	+	743.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198671, exon 14 of 16)	exon (NM_198671, exon 14 of 16)	12588.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	4.08802119135696	4.08443286719301	4.00346575696319	3.80326695748948	3.47769919924927	3.70937508427921	3.63638374839979	3.7048895300536	-1.09777496125655	0.0204087719229121	0.129761141286375
Merged-chr1-153900754-2	chr1	153900654	153900854	+	984.3333130000001	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106194)	TTS (NR_106194)	825.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	3.80494700590603	3.68791839236867	3.6063936147189	3.14811004745279	3.67030959740304	3.77866686155671	3.53741462300122	3.49216233139631	0.157000698495606	0.767749102826131	0.909141948627679
Merged-chr3-96161651-2	chr3	96161551	96161751	+	855.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181409)	promoter-TSS (NM_181409)	-319.0	NM_181409	194126.0	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	3.14684443939132	2.82333181453999	2.97526681034493	3.02436719634409	2.77015426992535	3.08457339297268	2.96465271792085	3.0336063703416	-0.145929804661897	0.808639372043207	0.926138274128125
Merged-chr1-173739712-4	chr1	173739623	173739823	+	745.041687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204910, intron 1 of 7)	intron (NM_001204910, intron 1 of 7)	2086.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	2.84915436760473	2.64236221978914	2.92010188046049	2.92352937505754	3.46261713542853	3.22556871797959	3.15804685636342	3.42599291892185	1.93074967166812	0.00192000227857383	0.0226452099729257
Merged-chr7-29229432-6	chr7	29229393	29229593	+	880.236084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033525, intron 1 of 2)	intron (NM_001033525, intron 1 of 2)	3029.0	NM_001033525	52150.0	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	3.44970423823388	3.55126895695871	3.26733768960714	2.88104699629238	3.83538483568797	3.73078455190755	3.37897691575056	3.50391385379232	1.07000038643358	0.0625108285828179	0.264769905843285
Merged-chr3-107895840-4	chr3	107895758	107895958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010360)	promoter-TSS (NM_010360)	4.0	NM_010360	14866.0	Mm.282351	NM_010360	ENSMUSG00000004032	Gstm5	-	glutathione S-transferase, mu 5	protein-coding	6.04944318466435	5.95848559367278	6.12911337856172	5.99157692213095	5.64042774002508	5.68000219633778	5.99921638549081	5.84909535854155	-0.376769138376829	0.129976209986856	0.401334945198567
Merged-chr3-144569757-3	chr3	144569611	144569811	+	949.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053102)	promoter-TSS (NM_053102)	505.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	3.9520012320712	4.45433660565451	4.51916451309661	4.58193338502324	4.36679756407473	4.07659786357539	4.33679162849964	4.62564293017172	-0.097023741691559	0.818392331632535	0.930382675088584
Merged-chr13-42337227-4	chr13	42337130	42337330	+	879.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35754.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	4.26983768988942	4.27552978066074	3.66753014028929	4.00804698890821	4.83699053330516	4.25797676834712	4.20682942879098	4.26779974352011	0.858125753484513	0.0599646478965646	0.258382691000035
Merged-chr11-5542883-4	chr11	5542771	5542971	+	929.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134033)	promoter-TSS (NM_134033)	-654.0	NM_134033	104479.0	Mm.210403	NM_134033	ENSMUSG00000020482	Ccdc117	1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601	coiled-coil domain containing 117	protein-coding	5.08542995676996	4.9822150926334	4.42942996791367	4.11725279058835	5.24652129806768	4.9930229287495	4.83113505986577	4.88715207156982	0.601176435683783	0.142966405591719	0.421008886004425
Merged-chr17-67405797-4	chr17	67405693	67405893	+	821.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51302.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	4.97465368300978	5.04692085310761	5.2526378257691	4.73863663400266	4.62853929506386	4.19756372785094	4.0517585406038	4.48681661525724	-1.37324185389554	0.000761028516313057	0.0108165432832762
Merged-chr8-80808332-3	chr8	80808229	80808429	+	727.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021356, intron 1 of 9)	intron (NM_021356, intron 1 of 9)	-68870.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	3.79379008757634	3.80775197525967	3.19886713052358	3.18917605865619	3.16617706121013	3.44526254131007	3.31697904778846	3.65500573357284	-0.410919137410951	0.483150186606766	0.757653604981722
Merged-chr4-133918594-3	chr4	133918503	133918703	+	739.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10-int|LTR|ERVK	-30806.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	2.66101355484342	2.59523112954921	2.66125509407934	2.2230379239924	3.96480213979632	3.42422230069963	3.39272423342642	3.69001112755016	7.56469911763521	3.71588470771726e-14	5.26878401614755e-12
Merged-chr7-19318325-2	chr7	19318225	19318425	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8280.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	2.83969064198467	2.62672183936368	2.71981121520914	2.3216986476339	2.60438054798511	2.54609619225512	2.70968518556749	2.8945043416612	0.292623097472256	0.678625743041143	0.8681208945003
Merged-chr3-90081666-5	chr3	90081535	90081735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357581, intron 1 of 8)	intron (NM_001357581, intron 1 of 8)	2114.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	6.45182477082538	6.42617932899794	6.3139520788443	6.05203116088912	6.07030036691207	6.48957366561144	6.22554240462107	6.44834766180654	0.00471324491126635	0.984561487423707	0.994329309355676
Merged-chr3-88685399-4	chr3	88685291	88685491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028814)	promoter-TSS (NM_028814)	-396.0	NM_028814	74200.0	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	7.19355445893186	7.36725779804312	7.15957281092669	7.22569620402727	7.46514472888768	7.50376097642491	7.52603854778158	7.71197195164164	0.418048371239964	0.0185723511032215	0.121874942433843
Merged-chr15-97312086-4	chr15	97311993	97312193	+	942.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 3 of 5)	intron (NM_172293, intron 3 of 5)	-64806.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	4.61743547504281	5.39708363061617	5.46452086212313	5.73851242736523	5.23522587997924	4.7554267974589	4.89224007030998	4.56687357361121	-0.899050230551152	0.0255397682511743	0.150712324922788
Merged-chr17-34306593-4	chr17	34306485	34306685	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010382, intron 1 of 5)	intron (NM_010382, intron 1 of 5)	718.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	5.50655879328406	5.26678066401126	4.53966201686987	4.55371337513966	5.18095880599767	5.13648890710056	5.13442288019139	4.88318388253832	0.114556400871679	0.770661724130039	0.910265273875382
Merged-chr1-40356139-3	chr1	40356042	40356242	+	955.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356478, intron 8 of 10)	intron (NM_001356478, intron 8 of 10)	31553.0	NM_133193	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	4.76242172868472	4.80168120799233	4.8299355316676	4.76302572393126	4.00837411055247	4.29083943405445	4.24869417132888	4.53588277894901	-1.1870366454913	0.00188408319801065	0.0223233012131462
Merged-chr15-98934548-4	chr15	98934452	98934652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011654)	promoter-TSS (NM_011654)	-162.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	7.41491617186526	7.373432736238	6.79349333972453	7.04300652021572	7.39189821647299	7.27267052958364	7.69357681447648	6.98866738277228	0.249901042558322	0.287262815631956	0.598979176834825
Merged-chr10-51531037-4	chr10	51530948	51531148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS3|LTR|ERV1	40150.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	7.91967432059196	7.99727627152937	8.43657218263048	8.07916845941362	7.98652306082152	8.38291855836279	8.27374602603464	8.32879941395039	0.160099131496913	0.394349945086812	0.693493392798635
Merged-chr12-55467049-4	chr12	55466964	55467164	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25583.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	5.35930934014967	5.10952043275815	5.5342513039842	5.19916962793127	5.02098355382974	5.09374559709944	4.7339479999188	4.61802340671189	-0.798525282314006	0.0168044155440214	0.113639518065852
Merged-chr12-70999750-4	chr12	70999649	70999849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045055, intron 3 of 3)	intron (NR_045055, intron 3 of 3)	16074.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	8.02134835439441	7.98166372894122	8.11289430647891	8.02584404968366	7.99925103746934	8.0437395348643	8.06813640155968	8.03060994583164	-0.000688468212978024	0.996400779592273	0.998602617451138
Merged-chr7-110557191-4	chr7	110557097	110557297	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 2 of 40)	intron (NM_177324, intron 2 of 40)	57723.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	4.83106352643267	4.45980075547748	4.01098339433538	4.11912939486061	4.78104279181272	4.39904692260712	4.15467153508929	4.21953863621066	0.0746462301542732	0.86961914636823	0.951054729822361
Merged-chr16-36697802-3	chr16	36697704	36697904	+	893.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 1 of 7)	intron (NM_001285788, intron 1 of 7)	3826.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	3.57112496237194	3.17451930142583	4.01955027354941	3.72607467145673	3.37432301083359	3.51540882477472	3.55709692285469	3.39787440593682	-0.631984936788279	0.252403121320929	0.563668364211162
Merged-chr5-21379115-3	chr5	21379000	21379200	+	731.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008013)	TTS (NM_008013)	6427.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	3.46628275920415	3.24107152860751	3.46676623602115	3.32516821035251	3.78847997323867	3.21137261694543	3.22364276154891	3.46481091508482	0.278824607967927	0.612785233032816	0.832838923509562
Merged-chr19-37963904-2	chr19	37963812	37964012	+	1000.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 19 of 53)	intron (NM_001302140, intron 19 of 53)	79665.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	5.04149120682569	5.20582347721153	5.11121953322489	5.4123660876886	5.17735190020007	5.34977592809605	5.01815235994104	5.17304631573485	-0.0678409976158037	0.825203039163267	0.932986961125265
Merged-chr5-121377170-2	chr5	121377070	121377270	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359947, intron 6 of 11)	B2_Mm1t|SINE|B2	8239.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	3.66886894759532	3.64880789237673	3.45154600312936	3.01883903056253	3.57902252519956	3.88781232224528	3.49555472226702	3.50755081312544	0.514582995646956	0.351518108006714	0.658893189148013
Merged-chr17-25801228-4	chr17	25801172	25801372	+	992.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4227.0	NM_133719	70083.0	Mm.41925	NM_133719	ENSMUSG00000002274	Metrn	1810034B16Rik|EyeLinc16|Hyrac	meteorin, glial cell differentiation regulator	protein-coding	5.18731089439373	5.14745233171284	4.6955917511314	4.79623976678699	5.06378974416759	5.13889916279985	4.63104016393535	5.06233902910598	0.0458404002018577	0.8946495838246	0.960655379918931
Merged-chr2-45280532-4	chr2	45280433	45280633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163091.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	5.53122325883404	5.22579107099666	5.21667946545518	5.49073016438859	5.29997484095164	5.22055627691545	5.37151427832211	5.33700736914608	-0.131957917718197	0.646873159791124	0.851448575933806
Merged-chr2-14234211-4	chr2	14234119	14234319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 1 of 29)	LTR16C|LTR|ERVL	4805.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	6.38564083741415	6.56898716169627	5.80096387323509	6.31169795230136	6.40780383594737	6.50920827888521	6.5006382456617	6.02310584416373	0.110594856854094	0.674280748256314	0.866093506924868
Merged-chr10-121454270-3	chr10	121454180	121454380	+	938.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	21970.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	4.22520397271103	4.65766089050374	4.08609506102209	4.76905544743326	3.95647443224801	3.93741148432192	3.96745448321037	3.61892928368863	-1.5536637077945	0.000966938979100716	0.0130847432687091
Merged-chr1-91412649-2	chr1	91412549	91412749	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360900, intron 3 of 3)	CpG	573.0	NM_019479	55927.0	Mm.280029	NM_019479	ENSMUSG00000067071	Hes6	AI326893|bHLHb41	hairy and enhancer of split 6	protein-coding	3.36761673574195	3.38524849681383	3.5240111342106	3.38271606843303	3.20843069603546	3.23579315521874	3.35502714208356	3.25088564933104	-0.55559889822264	0.288674674987807	0.600681913986027
Merged-chr11-117076807-4	chr11	117076702	117076902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027059)	promoter-TSS (NR_027059)	19.0	NR_027059	76972.0	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	6.12696447570079	5.86785571347821	5.34923171383365	5.66300712386425	5.17144729335331	5.78891333650719	5.82392660787891	5.27882106656778	-0.399448891301601	0.220605574070971	0.528550421367638
Merged-chr5-139775735-4	chr5	139775644	139775844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026748)	promoter-TSS (NM_026748)	-66.0	NM_026748	68510.0	Mm.292942	NM_026748	ENSMUSG00000029547	Ints1	1110015K06Rik	integrator complex subunit 1	protein-coding	6.64194130394091	6.35575352802781	6.18580078681089	6.44643734220786	6.40524341185103	6.11749451237079	6.19419143505188	6.29829508386733	-0.228247148752188	0.324084020928463	0.635604015255477
Merged-chr14-103346036-3	chr14	103345937	103346137	+	849.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207215, intron 1 of 84)	(CA)n|Simple_repeat|Simple_repeat	763.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	4.15262845316834	3.81368225976388	4.0627124231557	3.96680664493827	3.99965008007906	4.18679298158866	3.94880780698059	4.1935577658613	0.221781669554675	0.5981013297511	0.825700950899405
Merged-chr1-144308474-4	chr1	144308393	144308593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59389.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	5.71911220092601	6.00832812661939	6.1287630509524	6.44590975052631	5.50045755672426	6.24378761145171	5.91046569334373	5.71606659082893	-0.402451707285907	0.179370507995591	0.47560913362456
Merged-chr16-36670495-2	chr16	36670395	36670595	+	836.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-4418.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	3.13198903886497	2.97115579437126	3.07220234318124	2.90721776121808	3.04112057274364	3.11934439248448	3.3336123621667	3.24311146234522	0.684833264222867	0.223128696638226	0.531181190686666
Merged-chr12-98320210-4	chr12	98320086	98320286	+	836.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51551.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	4.30699577784483	4.13345057533634	4.70611028831121	4.97386176345197	4.16538207164942	4.28683210956773	4.50127934052908	4.39513537568688	-0.571189176258261	0.1861170183651	0.484014101364226
Merged-chr10-80755083-4	chr10	80754980	80755180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199322)	promoter-TSS (NM_199322)	-123.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	8.48221757303553	8.72723213195555	8.54193617509836	8.27930797395053	8.53580936195624	8.66639637606248	8.5491211952089	8.29044228891713	0.00512755000447268	0.976392665329353	0.991537706656775
Merged-chr3-144137686-3	chr3	144137612	144137812	+	992.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64620.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	3.09236957866929	3.3651581677006	3.55592521290872	2.64466962639636	4.01600367266289	3.73454562574767	3.79281549466087	3.94020022283412	2.2094294790988	0.000571526466252202	0.00859693202480251
Merged-chr18-50128234-4	chr18	50128118	50128318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008292)	promoter-TSS (NM_008292)	17.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	5.90269670945379	5.70686867666127	5.57114161071415	5.96813019747416	5.74829024778495	5.77798580103633	5.960013941599	6.28359539378826	0.237372443349402	0.384926203573389	0.686339234572901
Merged-chr7-43921294-4	chr7	43921194	43921394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12477.0	NM_174865	317652.0	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	6.63403988158946	6.97726543539719	6.77505300498153	6.88697660396054	7.22079534593945	6.95216021947589	7.1492539142742	6.78485422363946	0.297846127180477	0.154562835293027	0.439801241388062
Merged-chr17-29603447-3	chr17	29603351	29603551	+	763.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198647, intron 12 of 12)	intron (NM_198647, intron 12 of 12)	-7146.0	NR_045447	74092.0	Mm.396264	NR_045447	ENSMUSG00000089900	Tbc1d22bos	0610038L08Rik	TBC1 domain family, member 22B, opposite strand	ncRNA	3.29531220226305	3.28933018966196	3.62599143791082	2.81942629811102	3.62344965403535	3.27953257918329	3.6096309681117	3.67130225120756	0.9214523414452	0.120380343672618	0.384085009739267
Merged-chr7-125472126-4	chr7	125472031	125472231	+	892.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026330, exon 3 of 8)	exon (NM_026330, exon 3 of 8)	19411.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	4.00007802271911	3.89672356929304	4.28227099208375	4.13734947630166	4.2822553873975	4.22636467690443	4.17656523934879	4.39978976204323	0.465215474832471	0.249009342559884	0.560207151982062
Merged-chr3-122274962-2	chr3	122274861	122275061	+	650.5	f0_balb.idr|f0_c57.idr	intron (NM_153806, intron 1 of 6)	intron (NM_153806, intron 1 of 6)	547.0	NM_153806	99480.0	Mm.398647	NM_153806	ENSMUSG00000039756	Dnttip2	4930588M11Rik|AA408582|AU014960|HSU15552	deoxynucleotidyltransferase, terminal, interacting protein 2	protein-coding	3.92222160122117	4.00506218633073	3.92279557280884	3.7501754844179	3.94067623197608	4.04443622216877	3.80619600783782	3.81939026635523	0.0356506325421728	0.9350774748381	0.976465285317276
Merged-chr11-105311769-3	chr11	105311660	105311860	+	835.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008626, intron 1 of 29)	intron (NM_008626, intron 1 of 29)	19114.0	NM_008626	17534.0	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	3.58058586944633	3.25448301418599	3.37560750700905	3.19926700384512	3.27891432327015	3.30861150601651	3.3624291167308	3.42824641117933	-0.0225239541496799	0.966012105357294	0.988022131369328
Merged-chr2-124612495-4	chr2	124612444	124612644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	2248.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	6.57529155171379	6.17591868541999	7.665097683031	7.20306634587826	7.3694275044644	6.41829195872584	7.31824697159249	7.42377297205489	0.214530375896313	0.691229564941919	0.874374075048886
Merged-chr9-61169214-2	chr9	61169114	61169314	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30699.0	NR_045705	619328.0	Mm.325722	NR_045705	ENSMUSG00000110998	I730028E13Rik	-	RIKEN cDNA I730028E13 gene	ncRNA	3.51999171747797	3.44363093197505	3.40611040313107	3.83568123959061	3.75768868301423	3.3923186571677	3.61056972779193	3.40444531444455	-0.0637414497087114	0.903980277585696	0.964481400879459
Merged-chr9-63782860-4	chr9	63782767	63782967	+	674.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24873.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	3.63883873805752	3.45818489825553	3.58254198201451	3.57752047288882	3.96152396212054	3.57759300561069	3.82770561054849	4.09793639706461	0.948836112963832	0.0437281722597597	0.212866063006253
Merged-chr17-88368070-4	chr17	88367963	88368163	+	959.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72641.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	4.97147545266407	4.93891786907751	5.66361373612581	5.56866773632813	4.93133721356904	4.72758791349057	5.01932650622989	5.1406842710191	-0.700976129145101	0.0486021895879086	0.227595740307746
Merged-chr2-144527518-4	chr2	144527421	144527621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029763)	promoter-TSS (NM_029763)	-107.0	NM_001360362	241688.0	Mm.442156	NM_172859	ENSMUSG00000037259	Dzank1	2810039F03Rik|6330439K17Rik|Ankrd64	double zinc ribbon and ankyrin repeat domains 1	protein-coding	7.59979970539103	7.63546559634903	8.06810079718615	7.88403089937849	7.76296797363596	7.78756559034764	7.79245593226154	7.77937692937212	-0.0430501943037102	0.811161880127611	0.926883359837906
Merged-chr17-10848973-4	chr17	10848859	10849059	+	985.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	8600.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	4.91359762978821	4.79073184536055	4.84060077117759	5.00509709507699	4.64987579191581	4.85758328664745	5.47594113360625	4.94643369249907	0.234935600667672	0.51297881755548	0.776079955542303
Merged-chr3-87488106-4	chr3	87487967	87488167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113238, intron 11 of 11)	intron (NM_001113238, intron 11 of 11)	-37511.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	5.18424214064518	4.91902721844436	5.27997020531192	4.97260197802428	5.34298747356674	5.42367740946654	5.52454149667712	5.52414664183678	0.673126449555934	0.0210788784867247	0.132623839106035
Merged-chr11-3199713-4	chr11	3199598	3199798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2655.0	NM_001166548	74203.0	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	4.3984423203039	4.33862830100732	4.80237737200188	4.09529682135703	4.36979408277203	4.75161139835943	4.84544138966737	5.15717958479638	0.832681443614139	0.0432091439205437	0.211540247274254
Merged-chr13-52115075-2	chr13	52114975	52115175	+	840.416626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045061, intron 3 of 7)	ORR1E|LTR|ERVL-MaLR	18334.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	3.27782349377324	3.36605068930711	3.21680352153022	3.16484725464815	3.5934109750901	3.39012617412125	3.3804477408565	3.59395089331469	0.872150406144152	0.0878457659758412	0.323291404512771
Merged-chr16-49857723-4	chr16	49857648	49857848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	2094.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	5.92484164212348	6.14421243638891	6.75999625872209	6.46800261167276	5.83581405655963	5.89761680559009	6.48030385868128	5.8213981042136	-0.499258060552967	0.0936346255402998	0.334750249505744
Merged-chr10-11350354-3	chr10	11350266	11350466	+	789.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010146, intron 1 of 3)	intron (NM_010146, intron 1 of 3)	6921.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	3.17633936208913	3.05227300560739	2.9547099972565	3.29186584978258	2.86464852835282	2.631950186368	2.75126089618684	2.89124508471918	-1.54029300876517	0.0199649243461117	0.127852753039306
Merged-chr1-136138544-4	chr1	136138557	136138757	+	997.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	7267.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	3.75624935927195	3.75048392500277	3.85828450312227	3.65879360774369	3.88172465562859	3.76456892806086	3.74169528920007	4.03719142727795	0.33108653935391	0.458605235171039	0.74144172337427
Merged-chr12-34663926-2	chr12	34663832	34664032	+	833.583374	f0_c57.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-135043.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	3.12889074866377	2.81346775797	2.8894310060135	2.4329583884739	3.8875544707509	4.03739728603752	3.88589091574273	3.94483379470346	5.38032717271101	2.0074458235885e-12	2.03834502535243e-10
Merged-chr3-58417035-3	chr3	58416958	58417158	+	986.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081229, exon 1 of 4)	exon (NM_001081229, exon 1 of 4)	2338.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	4.54098150774402	4.55873473628575	4.73485737215011	4.74370356337746	4.51520629264317	4.75508116010715	4.34432179796019	4.65802673215165	-0.179446948596211	0.616741357257329	0.835150401688917
Merged-chr10-50894602-4	chr10	50894443	50894643	+	836.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1108.0	NM_011376	20464.0	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded family bHLH transcription factor 1	protein-coding	4.52286623870087	4.50930302453426	5.17217906929866	4.91952801193126	4.27125101912967	4.21318257936134	4.1323464424323	4.84856575212869	-0.947179429405107	0.0294883102353991	0.165362675037066
Merged-chr3-19301471-6	chr3	19301353	19301553	+	748.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122759, intron 1 of 12)	intron (NM_001122759, intron 1 of 12)	9869.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	3.46919246924167	3.39424295446033	3.52350450197995	3.9064379745816	3.39765359823616	3.19937016294355	3.50942626192626	3.41168693662952	-0.736232005124217	0.175422578029721	0.470137395912276
Merged-chr4-155869521-4	chr4	155869417	155869617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028020)	promoter-TSS (NM_028020)	-50.0	NM_028020	71957.0	Mm.475640	NM_028020	ENSMUSG00000029034	Ints11	2410006F12Rik|AU044035|Cpsf3l	integrator complex subunit 11	protein-coding	7.75023364348872	7.65101538262133	7.30289391835984	7.41327698047115	7.80493411155013	7.66422018133913	7.46872078211231	7.66688257079054	0.162656726521797	0.392256081162681	0.691857527785958
Merged-chr2-77268731-1	chr2	77268631	77268831	+	616.0	f0_balb.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	11861.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	3.56291335744767	3.43487162329019	3.17827366812142	3.86593902798948	3.38348588603654	3.73643319575935	3.75281929147101	3.94385239779066	0.521440499539656	0.355249344983412	0.661813745489821
Merged-chr3-38206094-4	chr3	38206000	38206200	+	852.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040541, intron 2 of 2)	intron (NR_040541, intron 2 of 2)	2019.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	3.63912848499658	3.83973037157439	3.75362628200031	4.01685345637767	4.10370992258012	3.75692351740268	4.069646707367	3.85630750991354	0.350928992041589	0.445873885985482	0.73171921081227
Merged-chr19-46306169-2	chr19	46306101	46306301	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NR_152247)	promoter-TSS (NR_152247)	271.0	NM_001177370	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	4.71386066528096	5.27897958030279	4.67213670041677	4.59147483470946	4.84384076108778	5.21726913641097	5.27957825556693	4.79249574748845	0.405088128869361	0.273697581339641	0.585380302951494
Merged-chr10-8945299-3	chr10	8945197	8945397	+	838.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59227.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.42751434402658	3.77048657375678	3.42790073843511	3.87857276392167	3.57801040700932	3.71743984575682	3.58786277469576	3.88932995574255	0.121611777276145	0.81169613571825	0.927200527094129
Merged-chr10-117825067-4	chr10	117824955	117825155	+	814.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	20919.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	4.87531106984739	4.62524523745755	4.47239301819535	4.47640412235387	4.51222610602077	4.51269438115969	4.45227900263695	4.55312128342699	-0.233003936929901	0.521898490737109	0.781722031779144
Merged-chr2-26498383-4	chr2	26498282	26498482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	5440.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	5.38402993782065	5.50519664618206	5.38496125052313	4.94378234656254	5.39678262930863	5.74526716458079	5.29909163044185	5.29114002840954	0.245875058071586	0.433974367058931	0.723327995916111
Merged-chr4-141663148-4	chr4	141663052	141663252	+	857.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	PB1D10|SINE|Alu	963.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	4.46386180207682	3.76655010351327	4.10994776863604	4.05398257152049	3.8082833036424	3.9818328905628	4.13592549278503	4.01305349998384	-0.346595405794237	0.444020383723726	0.730462472425057
Merged-chr12-84192517-4	chr12	84192478	84192678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	1437.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	5.09671555744389	5.20872334934882	5.56251322647956	5.3603166035201	5.39373440742179	5.49504494513334	5.07337118720994	5.19504840732689	-0.0339101336362159	0.911184047914628	0.966911184949593
Merged-chr7-141372347-4	chr7	141372240	141372440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7230.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	7.31107646834598	7.54702185435354	7.67394594216383	7.74866965044789	7.45713241780891	7.36592085689491	7.48282341530762	7.42019341252789	-0.207349977013771	0.259396588057579	0.571239086113186
Merged-chr9-113792820-4	chr9	113792715	113792915	+	931.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286603)	promoter-TSS (NM_001286603)	-515.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	4.89086873771141	4.54753509714941	4.52985688288827	4.94073774808127	4.39382064539483	4.15276028932507	4.66500378800227	4.56811929057729	-0.642946566279163	0.0953285818551447	0.337917984455545
Merged-chr10-22058720-4	chr10	22058623	22058823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	9356.0	NM_053264	114671.0	Mm.288194	NM_053264	ENSMUSG00000069712	4930444G20Rik	-	RIKEN cDNA 4930444G20 gene	protein-coding	6.84353708803416	7.06210552208565	6.44221894384865	6.68543764727618	7.74928291434282	7.78720801496896	8.03105693036992	7.60445423318706	1.37693444303923	5.87717578112491e-11	4.67409491535967e-09
Merged-chr6-39778141-3	chr6	39778014	39778214	+	680.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32822.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	3.42387930711344	3.5768466801541	3.68261317889349	3.5313637564847	3.37691297069336	3.35124785739404	3.35404187049495	3.63318438400962	-0.416337218050784	0.410826347624367	0.706258832381003
Merged-chr4-138041283-3	chr4	138041156	138041356	+	783.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355699, intron 1 of 32)	B3A|SINE|B2	43431.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	3.47429642816661	3.19658213594172	3.71627924710846	3.51023037407521	3.32044357746318	3.35442100533852	3.4607524973753	3.24058052119909	-0.487104584822149	0.361762177096831	0.667060515091843
Merged-chr10-81407758-4	chr10	81407661	81407861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 5 of 8)	intron (NM_026756, intron 5 of 8)	-1814.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	8.32066267006251	8.22387388130852	7.98459675259891	8.1695563494289	8.23960248161423	8.09717354608075	8.26136086730828	8.05440515210295	-0.0149336823461749	0.927089604082731	0.973308027094864
Merged-chr8-119844827-4	chr8	119844736	119844936	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4257.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	6.27252586380417	5.80763225751842	6.05510980303064	6.79003622019323	5.92148578749589	5.64383209545006	6.16659888348556	6.50129621143285	-0.30901411705494	0.338350634663065	0.647974082462358
Merged-chr4-94052915-3	chr4	94052817	94053017	+	704.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	503879.0	NM_026368	67770.0	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	3.5118833766353	3.71080395713646	3.80133453708503	3.98451832850059	3.0134095333736	3.18001976231055	3.26496889732136	3.20854041359406	-2.30140635669452	8.65873591920703e-05	0.00180000047895221
Merged-chr10-80140857-2	chr10	80140757	80140957	+	781.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1418.0	NM_001347092	66043.0	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|Atp5f1d|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	2.66779128876393	2.52672883810478	2.86476057625184	2.53727046830181	2.55780098322474	3.2032030607099	2.79185553181526	2.92262760812341	1.0816627870731	0.110875144457801	0.367844213342608
Merged-chr2-103970114-4	chr2	103970029	103970229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142335)	promoter-TSS (NM_001142335)	-158.0	NM_008505	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	7.03107380352026	6.87467510669994	6.753699573393	6.99435365455102	6.83904897718555	7.10903030304124	6.70479776243162	6.88917919360903	-0.0462636311001843	0.819821994693993	0.931038192981049
Merged-chr10-78159449-3	chr10	78159356	78159556	+	834.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10312.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	3.54012699120039	3.36218352420727	3.48941162387935	3.49733390994204	3.6308008243643	3.23874163219504	3.25040210821982	3.4340623413211	-0.220405248937802	0.675815803067883	0.866929785285144
Merged-chr10-95300413-4	chr10	95300297	95300497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	ORR1E|LTR|ERVL-MaLR	23312.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	7.19049941613985	7.28806348572487	7.04449155133547	6.70477899701526	7.0175808422752	7.09499162782651	6.63496678391609	6.87268785734226	-0.20350310436179	0.371428203270255	0.675452545427391
Merged-chr10-51422737-4	chr10	51422637	51422837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-57875.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	6.4007913708593	6.56059972872308	6.5333954088271	6.43876640294261	6.29973590195782	6.19879600636541	6.10124676524169	6.32610337250311	-0.365370054516782	0.0938234893676304	0.335119537821084
Merged-chr17-47611546-4	chr17	47611437	47611637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020048)	promoter-TSS (NM_020048)	-45.0	NM_016859	53414.0	Mm.472101	NM_016859	ENSMUSG00000023988	Bysl	Bys|Enp1	bystin-like	protein-coding	6.62612111871214	6.67602155648718	6.03681989132699	6.49847285036607	7.13918337901622	6.80415567294552	6.86054134350263	6.87792165280377	0.636461025891838	0.00582019338196783	0.0531190594608397
Merged-chr4-134759746-4	chr4	134759655	134759855	+	925.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	8249.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	4.38867325755337	4.68701908030792	4.84642545956586	4.70071301033007	4.47515552903187	4.65096110841359	4.32472501597683	4.47507757621006	-0.412993573578579	0.260442748240648	0.572268147713191
Merged-chr14-17873825-3	chr14	17873725	17873925	+	797.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-107819.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	3.85616227077251	3.86354813021771	4.48299710007993	4.39368318344882	3.88501296926732	4.03636551807504	4.46108592233202	4.01644193900326	-0.179978291959083	0.70373207220307	0.880846429903092
Merged-chr6-87812641-4	chr6	87812529	87812729	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104478)	promoter-TSS (NR_104478)	-465.0	NR_104478	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	4.56030455927168	4.60835793054869	4.47506828495088	4.85734698671552	4.79300874355498	4.69266869681388	4.45526747621603	4.67695522034829	0.0291775292280731	0.935752878517712	0.976655534473331
Merged-chr5-23225175-3	chr5	23225087	23225287	+	693.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081231, intron 3 of 3)	intron (NM_001081231, intron 3 of 3)	209166.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	3.34956297164482	3.02282997505295	3.49576505811361	3.16115163016072	3.05617214445959	3.1730152889981	3.05216809159524	3.06096363814632	-0.698836467235057	0.226939305978258	0.535604327821614
Merged-chr17-29842427-4	chr17	29842315	29842515	+	944.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081160, intron 8 of 15)	intron (NM_001081160, intron 8 of 15)	45467.0	NM_001081160	74762.0	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	4.85418505515054	4.43114432002115	4.95537406749769	4.89343983238484	4.63135494980874	4.58012273012992	4.86564254753119	4.85172277015334	-0.1368949952696	0.700163408253834	0.879054781621322
Merged-chr9-22475710-4	chr9	22475619	22475819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181316)	promoter-TSS (NM_181316)	4.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	7.70916603200659	7.49279289742566	7.52232868044021	7.920460547745	7.55365395552041	7.51105740596854	7.5994703004339	7.34962030310838	-0.231323040384176	0.22200725757786	0.530047563717821
Merged-chr13-19377392-4	chr13	19377302	19377502	+	853.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347485, intron 1 of 7)	intron (NM_001347485, intron 1 of 7)	18411.0	NM_024270	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	4.05164202231184	4.07348645490123	4.10388657883133	4.05698971407872	4.67100270974136	4.50654747053328	4.50942497804178	4.10147599927891	0.969370938146276	0.0147287167509902	0.103492135204218
Merged-chr5-113649846-4	chr5	113649723	113649923	+	978.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	567.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	5.07945707700337	4.99300876444499	4.67708663437964	4.42065310681572	4.32478955861458	4.44633619105124	4.73108297716604	4.95633527175079	-0.37045431780159	0.35627810004472	0.662747123269611
Merged-chr16-62782456-3	chr16	62782377	62782577	+	795.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178925, intron 2 of 5)	intron (NM_178925, intron 2 of 5)	4239.0	NM_178925	106338.0	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	3.33642809335176	3.80430212553163	3.45293107817664	3.5676154024417	3.17887013220175	3.51057577037702	3.3835261538363	3.39440439227166	-0.653553721617527	0.219200538767701	0.526701385711987
Merged-chr4-67447994-3	chr4	67447875	67448075	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	620424.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	5.46677336869757	6.08925735359131	5.72074844890107	6.12560987073564	4.13084064782186	4.21767402210703	4.1894256985155	4.00249861747978	-3.81688941113442	8.44348157476169e-19	2.43319261137637e-16
Merged-chr2-90679282-4	chr2	90679216	90679416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021512, exon 2 of 37)	5' UTR (NM_021512, exon 2 of 37)	2101.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	6.35585940819469	6.4741649530712	6.28259324875251	6.31634035364186	6.45885538987613	6.45877937951361	6.2118009773171	6.48908429547663	0.0788988913276283	0.717063720488729	0.886878862913419
Merged-chr5-148495368-4	chr5	148495269	148495469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56304.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	8.7479550184971	8.82550986785051	8.7902577276586	8.43578470371818	8.90079795239721	8.73392579300156	8.81322726501949	8.65320654340893	0.0979119396670784	0.549442173905555	0.798017111469724
Merged-chr7-17090318-4	chr7	17090241	17090441	+	968.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310628, intron 1 of 5)	intron (NM_001310628, intron 1 of 5)	16301.0	NM_007676	26436.0	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	5.12685646122363	4.70270227249711	4.48697304825018	4.61803661059826	5.38879828830406	5.39145781419367	5.16337703277033	5.30066042895729	1.09909984638869	0.000795935835916103	0.0111952868462491
Merged-chr13-56641965-2	chr13	56641865	56642065	+	755.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32379.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	3.45056016458551	3.57802849614577	3.45105275773449	2.97716040804181	3.26176155284443	3.56862300834423	3.6355768498913	3.07457635262791	0.0784254649812521	0.894123031212767	0.960481560907683
Merged-chr18-89089183-4	chr18	89089086	89089286	+	930.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175542, intron 35 of 48)	ORR1E|LTR|ERVL-MaLR	-108241.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	4.01378578988876	4.17575810320043	4.11920460612051	4.68202283660155	4.42593992599286	4.48124157122821	4.29086625369106	4.68557543389602	0.414889120053468	0.342820322065524	0.6516462545027
Merged-chr19-56801476-4	chr19	56801379	56801579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170757, intron 6 of 14)	intron (NM_170757, intron 6 of 14)	12204.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	6.51854066906215	6.73527474375229	6.29028315181603	6.1643050528297	5.75281601457476	6.11809113849923	5.75981573236514	5.78511248975791	-0.900217113610143	0.000608204938696172	0.00903033361106692
Merged-chr12-100925200-4	chr12	100925100	100925300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026681, intron 25 of 29)	intron (NM_026681, intron 25 of 29)	-17002.0	NM_001177673	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	5.84991682646971	5.7984755378363	5.4728274307355	5.81466473891691	5.60256188201437	5.64895629599356	5.35498300392535	5.49803354619921	-0.364057390276097	0.178488197924301	0.474282728191057
Merged-chr15-53239793-2	chr15	53239693	53239893	+	909.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	106390.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	3.12220367138956	2.847941815768	3.28884295494173	2.99120769464123	2.8866579812353	3.23493074626958	3.11074319246925	3.23391879243176	0.209195174177449	0.724295985159727	0.890116609880768
Merged-chr19-37419748-4	chr19	37419647	37419847	+	821.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010615, intron 21 of 21)	intron (NM_010615, intron 21 of 21)	-15094.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	4.28932620006682	4.21261280750525	3.96324378635545	3.77710674950309	3.91030220528177	4.08755945145701	4.38668491765194	4.3277052306729	0.314345437788496	0.478854608853285	0.7547139675738
Merged-chr4-3646228-4	chr4	3646150	3646350	+	861.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10256.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	3.75625970005762	3.56880601181686	3.94471706390802	3.82925709624008	3.67957582270342	3.52537323478877	3.74131547648662	3.80421196950097	-0.271891582665025	0.563423117946506	0.806335332803489
Merged-chr14-70599663-4	chr14	70599544	70599744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194345, intron 1 of 16)	CpG	191.0	NM_194345	239170.0	Mm.247582	NM_194345	ENSMUSG00000022095	Fam160b2	G430067P06Rik|Rai16	family with sequence similarity 160, member B2	protein-coding	6.78750579599895	6.88858858454462	6.80270629438505	6.63646337368375	6.57390873207646	6.80028118291854	6.94864055661102	6.78387613598805	0.00291525827242656	0.988787494552658	0.995492522898152
Merged-chr16-91043990-4	chr16	91043905	91044105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152264, intron 1 of 17)	CpG	374.0	NM_026110	67367.0	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	5.43500070321073	5.65809027052168	5.43594974448795	5.21618860380319	4.92908275538038	4.81892489014825	5.29551066781688	5.58544515962212	-0.451839656240131	0.178504614185384	0.474308643164904
Merged-chr7-99141287-4	chr7	99141189	99141389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178635)	promoter-TSS (NM_178635)	-145.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	9.17962883493856	9.28908847879195	9.27537558579436	9.09643883109411	9.28522048182348	9.40248544429868	9.30342502048913	9.2004380252027	0.11036339124919	0.430278392322571	0.720911233069582
Merged-chr10-75798459-3	chr10	75798350	75798550	+	742.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358778)	promoter-TSS (NM_001358778)	134.0	NM_008185	14871.0	Mm.2746	NM_008185	ENSMUSG00000001663	Gstt1	AI255817|Gstt1-1	glutathione S-transferase, theta 1	protein-coding	3.82470947149683	3.62852822578967	4.20803231098449	3.88222973360845	3.28603475200855	3.60546973389384	3.65254744175293	3.9636674810587	-0.76243273350817	0.14484991813628	0.424036712956412
Merged-chr5-96792602-4	chr5	96792513	96792713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013470)	promoter-TSS (NM_013470)	-772.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	5.46604714143745	5.50159125194564	5.99877927805182	5.82087332806217	6.15051214995901	5.76460557352036	5.90482153403778	6.05495455498062	0.424172556663723	0.119171183662949	0.381921912739533
Merged-chr1-150373058-4	chr1	150372948	150373148	+	660.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357579, intron 11 of 13)	intron (NM_001357579, intron 11 of 13)	-19790.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	3.63602266549216	4.1843657581524	4.10736854968264	3.93340125255069	3.8530036241426	4.18696422508847	3.79786881186221	4.06022137948357	-0.00628743371087325	0.989013347336093	0.995597494443074
Merged-chr5-32748190-3	chr5	32748097	32748297	+	954.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177298, intron 3 of 7)	intron (NM_177298, intron 3 of 7)	-1855.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	3.78910890516442	3.82290626283203	3.93786998178898	4.12185730600589	3.86182429063629	3.79800918393573	3.60926900005856	3.88805994760335	-0.404021692148081	0.377919533524941	0.680580252416743
Merged-chr14-45388847-4	chr14	45388741	45388941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019425)	promoter-TSS (NM_019425)	-45.0	NM_019425	54342.0	Mm.312945	NM_019425	ENSMUSG00000037722	Gnpnat1	AU017428|AU040593|EMeg32|Gpnat1|Gsnpat	glucosamine-phosphate N-acetyltransferase 1	protein-coding	6.45653052780605	6.40111179989532	6.66199268174852	6.89843813027823	6.22642946729636	6.1919174836001	6.47457566941614	6.45305401584767	-0.432838748819644	0.0677959586124478	0.277838185299054
Merged-chr16-44118223-4	chr16	44118119	44118319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	21040.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	6.43639516775005	6.10047203557461	6.18633066034532	6.47919057428982	6.43801282599963	6.21605277874076	6.19355755386621	5.70616591752267	-0.215598697696685	0.413930635077446	0.708836580295662
Merged-chr13-113242373-4	chr13	113242321	113242521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32762.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	4.18068614171737	4.39651949065909	4.51261779394063	4.67340083518091	4.87571940667585	4.68539830646435	4.53278084569732	4.5906076046133	0.468435185702569	0.216330556028064	0.522871496934719
Merged-chr2-131423770-3	chr2	131423674	131423874	+	809.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-68088.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	4.37854636790241	3.9096821812825	3.58633124780885	3.86212871751504	3.75426694093102	3.87837251830512	3.57325070569215	3.52236519081481	-0.787073835107082	0.121150504543946	0.385390724845415
Merged-chr13-52595010-4	chr13	52594908	52595108	+	952.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198977, intron 1 of 13)	intron (NM_001198977, intron 1 of 13)	-1874.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	4.68937918393459	5.25065455276004	4.35347751296236	3.75861501123226	4.98472009581269	4.78929268236789	4.07306704550683	4.25141418412383	-0.153077963075696	0.840293384058579	0.939246943014465
Merged-chr9-99200511-3	chr9	99200423	99200623	+	697.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36716.0	NM_001244762	623459.0	Mm.260891	NM_001244762	ENSMUSG00000096316	Faiml	EG623459|Gm6432	Fas apoptotic inhibitory molecule like	protein-coding	3.4831137366235	3.20887393687756	3.48361423285093	3.41202913553254	3.53137819162727	3.24609514370688	3.25115745934947	3.19940392449486	-0.271296129303174	0.615432914206264	0.834461661846382
Merged-chr11-99189358-4	chr11	99189253	99189453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34276.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	6.89063089422012	7.32520212264196	6.77797795643562	6.29570522313261	7.31268646156103	7.21005091358157	7.09102354041457	6.96601264411255	0.39721743145974	0.124767419767941	0.392136995346126
Merged-chr7-19175847-4	chr7	19175748	19175948	+	863.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347582)	promoter-TSS (NM_001347582)	-573.0	NM_001347582	72205.0	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	4.12939963890039	4.07762350373628	4.13003305434347	3.66713484589333	4.18123534926918	4.16013543118173	4.06597819870247	4.1720518757597	0.395440862976529	0.360538252245639	0.665897913449608
Merged-chr18-56759332-4	chr18	56759225	56759425	+	878.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51512.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	4.10803332978594	4.59556492583275	4.16030035843681	4.20122862911897	4.09377625662236	4.2357356925551	4.76507295360097	4.6557479620842	0.425246793074725	0.322005192184342	0.633481969373104
Merged-chr10-80577640-7	chr10	80577557	80577757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_078477)	promoter-TSS (NM_078477)	-361.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	6.71346782672779	6.80396634773018	7.06098211840688	6.5405517320762	6.61798962615174	6.79949700284681	6.40152422091326	6.86264011850787	-0.146363781522462	0.523330780422648	0.782464816143387
Merged-chr4-111886783-1	chr4	111886683	111886883	+	566.0	f0_balb.idr	intron (NM_145551, intron 11 of 14)	intron (NM_145551, intron 11 of 14)	16013.0	NM_145551	230612.0	Mm.26630	NM_145551	ENSMUSG00000028544	Slc5a9	AI159731|SGLT4	solute carrier family 5 (sodium/glucose cotransporter), member 9	protein-coding	3.44161040659874	3.3291445358015	3.55776769724302	3.73229316708198	3.72462126697491	3.88163073868739	3.74570409025522	3.37855395584982	0.493934210226968	0.337967239288759	0.647718939249696
Merged-chr1-70858753-3	chr1	70858675	70858875	+	895.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177164, intron 3 of 3)	RMER15|LTR|ERVL	133060.0	NM_177164	320460.0	Mm.360649	NM_177164	ENSMUSG00000045648	Vwc2l	A830006F12Rik|Brl	von Willebrand factor C domain-containing protein 2-like	protein-coding	3.70749663782421	3.42951859523825	3.70802013405866	3.91653517194038	3.68896430702809	3.4113281668303	3.83277814910212	3.60152308623758	-0.209299934426029	0.678646943839679	0.8681208945003
Merged-chr5-64029930-4	chr5	64029829	64030029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15044.0	NR_045384	74757.0	Mm.159329	NR_045384	ENSMUSG00000106219	5830416I19Rik	-	RIKEN cDNA 5830416I19 gene	ncRNA	6.05991376748596	5.66935262739301	6.1027868099394	6.07819784754331	6.18379897373602	6.25751579563883	6.34576469981775	6.11879856478474	0.362969308224193	0.13409956490739	0.407769691154439
Merged-chr4-139599108-4	chr4	139598984	139599184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	-23810.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	7.16137076674886	7.38112462946583	7.39876063174776	7.19391607282155	7.31830577227935	7.82307610875437	7.4827342015122	7.13375695911567	0.234539000764611	0.264284100711026	0.576455127446606
Merged-chr7-81842048-1	chr7	81841948	81842148	+	849.0	f0_balb.idr	Intergenic	Intergenic	-12617.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	3.77479992580748	3.09228554810298	3.32023632481159	3.52175287489022	2.73975654724729	3.0539157454163	3.00331110128129	3.07878547059892	-1.98670880844374	0.00235584306869267	0.0265326825611512
Merged-chr18-36508648-3	chr18	36508575	36508775	+	742.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010415, intron 3 of 5)	intron (NM_010415, intron 3 of 5)	7130.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	3.14696164571359	3.72378797441038	3.26599896768895	3.06966211687589	3.14361802680211	3.38057891882909	3.00759260436052	2.87208245502107	-0.802161686393224	0.202545408117392	0.505008393035863
Merged-chr2-29130260-3	chr2	29130137	29130337	+	960.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198033, exon 4 of 26)	exon (NM_198033, exon 4 of 26)	5245.0	NM_198033	269254.0	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	3.70716968183067	3.68602713930355	3.65786574503929	3.76589331879436	3.40896217903332	3.206791406763	3.53817387509821	3.75337979117378	-0.700407725941771	0.171149591082479	0.464245140949651
Merged-chr10-80102636-4	chr10	80102509	80102709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183426)	promoter-TSS (NM_183426)	93.0	NM_183426	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	5.88042238814186	6.09434581282499	5.99089075056169	5.87053538829298	5.72514423309852	5.77863785111966	5.7571943203997	5.83072957281541	-0.30168691324313	0.219086331097089	0.526569169716687
Merged-chr16-91464070-4	chr16	91463979	91464179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1025.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	6.23482688697561	5.31660045338039	6.00273937530515	5.96604424457974	6.01258651095489	6.15627528770079	5.88406578088509	6.01960341183677	0.159895620631595	0.576417882887542	0.813520896079505
Merged-chr8-46931401-4	chr8	46931306	46931506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3G|LINE|L1	-55481.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	6.80277686232937	6.96855615751771	7.06932887207354	7.0298779606444	6.72940167209627	6.62708072860241	6.69730263290362	6.6966055428279	-0.401915776695876	0.040427737022313	0.203163364410563
Merged-chr16-17132433-4	chr16	17132325	17132525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022324)	promoter-TSS (NM_022324)	-42.0	NM_022324	64136.0	Mm.30222	NM_022324	ENSMUSG00000022769	Sdf2l1	-	stromal cell-derived factor 2-like 1	protein-coding	8.62851915184031	8.75035841203525	8.84740109705388	8.90342233010707	8.60787814269359	8.59894439581045	8.73258626786189	8.76264773656044	-0.14281646519589	0.342921109847185	0.6516462545027
Merged-chr4-102574427-4	chr4	102574329	102574529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	4369.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	8.47441680440094	8.37229367981259	8.59372827995819	8.32364983253961	8.46842342976963	8.44386111213472	8.74928736982222	7.97960767407352	-0.00232719506262433	0.990433153036633	0.99622753338507
Merged-chr10-11281014-6	chr10	11281068	11281268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027968)	promoter-TSS (NM_027968)	-162.0	NM_027968	71865.0	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	7.57407850321591	7.96120135878883	8.32472348645162	7.83707318307488	7.72338092849868	7.76233783849559	7.83258020193149	7.65073156524791	-0.269022441963434	0.180962560149464	0.477382479759793
Merged-chr19-45047671-4	chr19	45047598	45047798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_155547, exon 1 of 11)	non-coding (NR_155547, exon 1 of 11)	122.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	6.80378874885656	6.77713847129949	6.91733560956674	6.42005661640068	6.47752010705536	6.32096141341448	6.31616266255514	6.5365305579907	-0.450739989512945	0.0496167984898852	0.230687719222147
Merged-chr14-64627346-4	chr14	64627254	64627454	+	962.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-25177.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	5.63826323455226	5.75717879572593	5.49800130762686	5.68943415639	4.81995106367706	4.39765458203367	4.66958772932951	4.68819674965539	-1.89082934756364	1.1513137690638e-08	6.03900978394933e-07
Merged-chr9-77733939-4	chr9	77733846	77734046	+	948.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-20589.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	4.81990615768889	4.57540888093738	4.74716136924766	5.05912271876872	4.71135425326209	4.76149633156844	4.86653763530877	4.53955581317088	-0.217770475887082	0.538079273816124	0.791344330116582
Merged-chr17-34033092-4	chr17	34032994	34033194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205214, intron 2 of 9)	intron (NM_001205214, intron 2 of 9)	744.0	NM_001205215	20182.0	Mm.1243	NM_011306	ENSMUSG00000039656	Rxrb	AL023085|H-2RIIBP|Nr2b2|RCoR-1|Rub	retinoid X receptor beta	protein-coding	5.61635579967335	5.44194824399114	5.0781831043656	5.3621142586369	5.44128284077114	5.39569900699955	5.53945555016656	5.43006819534113	0.115079855418228	0.687297215894986	0.872193208407699
Merged-chr12-111669385-4	chr12	111669340	111669540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021273)	TTS (NM_021273)	2898.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	6.22147253934091	6.18621656166386	5.92379579916879	5.74025020580097	6.22850520927277	6.43486060618243	6.1906601787964	6.34444961851081	0.43486280713214	0.0784892389722853	0.303220863572603
Merged-chr16-90284554-4	chr16	90284439	90284639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178923)	promoter-TSS (NM_178923)	-36.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	8.08617556325161	8.26247973040574	8.24809427577046	8.30921288707681	8.23687026438994	8.32276059289499	8.52017588835342	8.33234098347134	0.154829782813809	0.329494051391064	0.640831837145777
Merged-chr10-68091976-4	chr10	68091888	68092088	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112418.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	5.69440245062584	5.5105191731438	5.41216867005267	5.51465809791676	5.19857691133692	5.14973760327194	5.59574506078764	5.34934492949916	-0.358148817672092	0.213874812780385	0.519418016486679
Merged-chr14-20928269-4	chr14	20928162	20928362	+	946.357178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1136.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	4.77399454645927	4.7286534749473	4.73623387104615	5.4218022310001	4.71633186430522	4.56085188477013	4.63415250647885	4.91489810021408	-0.534769377146482	0.164001458209508	0.453904654629629
Merged-chr15-101231208-3	chr15	101231108	101231308	+	691.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019518, intron 7 of 7)	intron (NM_019518, intron 7 of 7)	-6022.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	3.91505886511578	3.66961482742186	3.39756583738367	3.5788319227519	4.04950460966984	4.08591954855778	3.80079739697255	4.04832087130152	1.01310415130456	0.0286597657494033	0.162587131069853
Merged-chr9-35211682-1	chr9	35211582	35211782	+	966.0	f0_c57.idr	promoter-TSS (NM_001291449)	promoter-TSS (NM_001291449)	479.0	NM_026130	67398.0	Mm.284688	NM_026130	ENSMUSG00000032042	Srpr	1300011P19Rik|D11Mgi27|Srpra	signal recognition particle receptor ('docking protein')	protein-coding	3.72042760918195	3.9773332081996	4.35596732092935	4.08884362728189	4.19664074494337	4.07448269124945	3.88156465904557	4.49799479328255	0.32500971693319	0.475265491332541	0.752170333885464
Merged-chr7-16102681-2	chr7	16102581	16102781	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025898, intron 1 of 10)	intron (NM_025898, intron 1 of 10)	4101.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	3.06720102999622	3.41442160232148	3.06758674179637	2.77346398421707	2.92770148075982	3.35831227713346	2.92685462662937	3.24129464195777	0.101846282769416	0.871317878095894	0.951599337849259
Merged-chr12-108333645-3	chr12	108333539	108333739	+	951.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010010)	promoter-TSS (NM_010010)	-677.0	NM_010010	13116.0	Mm.41911	NM_010010	ENSMUSG00000021259	Cyp46a1	CH24H|Cyp46	cytochrome P450, family 46, subfamily a, polypeptide 1	protein-coding	4.16446742438189	4.40359735510584	4.29407170901527	4.52511774505333	3.85929627555343	3.86205399155909	3.84574619628	4.06883511135432	-1.20372644840528	0.00476101643097333	0.0458261512562882
Merged-chr10-122447498-3	chr10	122447399	122447599	+	628.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016847)	promoter-TSS (NM_016847)	-1000.0	NM_016847	54140.0	Mm.4351	NM_016847	ENSMUSG00000020123	Avpr1a	AVPR|Avpr1|V1a|V1aR	arginine vasopressin receptor 1A	protein-coding	3.04402653827415	2.98896332056915	3.10135743927143	2.9841447106614	2.92675550331744	2.8204560607746	2.84814238076689	3.20613550359523	-0.287790044608289	0.631134147692471	0.843254641427651
Merged-chr3-81102786-2	chr3	81102686	81102886	+	764.583374	f0_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	66370.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	4.46654330372231	4.43510174667988	4.5050488131517	4.57779741995799	4.00047278538465	4.24196739675636	3.88282336319777	4.11367669454874	-1.1038725831818	0.0059561733577045	0.0539755921131391
Merged-chr2-32236562-4	chr2	32236445	32236645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145145)	promoter-TSS (NM_145145)	-138.0	NM_145145	99011.0	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	6.94282986086341	6.8484139517094	6.91872696282863	6.60839531748206	6.88068034949964	6.80983194628108	6.51638927046785	6.93913176590081	-0.0345530437879518	0.872037600857537	0.951877155217282
Merged-chr4-55811840-4	chr4	55811746	55811946	+	837.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-279371.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	3.8279433911085	3.82809240934551	4.07588568895198	4.35485687970275	3.97054963888687	3.83342513586625	4.05798834262645	3.98020852834784	-0.256315876866922	0.574598546044402	0.81246206040379
Merged-chr3-20033794-4	chr3	20033751	20033951	+	809.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 1 of 16)	intron (NM_080634, intron 1 of 16)	1459.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	3.87905640335303	3.88126120198417	3.83203503875616	4.0495745507659	3.8084409193814	3.41372182224261	3.60819758560446	3.67554334200947	-0.828742977288114	0.0847144805082583	0.316759958323353
Merged-chr1-171326816-3	chr1	171326703	171326903	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2005.0	NM_001357550	21945.0	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	3.3227778249108	3.21023381829927	3.32318741137796	2.55987717573409	5.0233146940769	4.66666919538863	5.23525312216215	5.02400082881543	7.24167855843291	8.67837896305597e-22	3.65513808409089e-19
Merged-chr7-80032975-4	chr7	80032869	80033069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	6741.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	6.38944825541721	6.47253711695621	6.76786183555401	6.62587662050754	5.78762668757302	6.1811934151543	6.30409441388446	6.47105706853299	-0.559138815514925	0.0263025151483491	0.153697292976303
Merged-chr6-108709677-4	chr6	108709545	108709745	+	789.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48711.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	3.79902384676356	3.89988278960506	4.0762920276507	3.33876863173023	3.74481301241096	3.7547990944096	3.83351702230095	3.89625007189519	0.0368690107709126	0.941348331931405	0.978864193635527
Merged-chr1-184235788-4	chr1	184235687	184235887	+	965.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	201406.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	4.64530898461336	4.5305905635826	4.37128659246455	3.86927121458606	4.68041203218522	4.31105515953071	4.4752892871519	4.23017481840489	0.158034059415999	0.716695611588164	0.886676884514573
Merged-chr3-137997465-3	chr3	137997370	137997570	+	766.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-15921.0	NM_011932	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	4.55308780029754	4.15357282807423	4.20117364986092	4.35401608923322	3.36601291246466	3.49892347306167	3.50879552785414	3.64863872886215	-2.56347160973964	6.5874019501395e-07	2.38983019066758e-05
Merged-chr12-84803867-4	chr12	84803764	84803964	+	833.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 16 of 34)	intron (NM_013589, intron 16 of 34)	30594.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	4.33053801119834	4.80411406975596	4.28659376421585	4.01863101508371	4.13189198711267	4.16337524335108	4.35427138307886	4.49261977286481	-0.227127547519454	0.600957681451009	0.827051492743764
Merged-chr13-45372406-2	chr13	45372291	45372491	+	603.833374	f0_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-17351.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	3.3589806248829	3.36696851770061	3.04572034630057	3.08076464396548	2.7757023463996	2.81772399652913	2.84571099028017	2.63131799927741	-2.09872998695847	0.00213274531121522	0.0245800969085149
Merged-chr19-4182043-4	chr19	4181955	4182155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6576.0	NM_134148	107239.0	Mm.482310	NM_134148	ENSMUSG00000075289	Carns1	AI790298|Atpgd1|mKIAA1394	carnosine synthase 1	protein-coding	7.6152531542942	7.39810669872586	6.58480598634596	6.8105164129398	7.34250797729632	7.12967392155306	6.99382449277121	6.92032389205428	-0.0750341566185023	0.780021005152284	0.914273965875713
Merged-chr16-62832644-4	chr16	62832544	62832744	+	842.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026577, intron 1 of 9)	intron (NM_026577, intron 1 of 9)	14396.0	NM_026577	68146.0	Mm.96833	NM_026577	ENSMUSG00000022911	Arl13b	A530097K21Rik|A930014M17Rik|Arl2l1|C530009C10Rik|hnn	ADP-ribosylation factor-like 13B	protein-coding	4.16419366902396	3.99328297075835	4.0197960404137	3.80988269651379	4.25620098484262	3.9207656658986	4.68832741388705	4.16223503485551	0.753683228246306	0.0859904243267877	0.319577250946843
Merged-chr2-118727029-4	chr2	118726971	118727171	+	837.712524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177568, intron 1 of 31)	intron (NM_177568, intron 1 of 31)	1367.0	NM_177568	18796.0	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	3.83431984439454	3.73943753240937	3.98301393458941	4.05633045178586	4.04423715128158	3.95468313540672	3.91894377498861	3.83270918712015	0.0688082089636141	0.875520423578104	0.953234646198388
Merged-chr14-72604321-4	chr14	72604213	72604413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	105690.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	7.29508761776969	7.2051897405598	7.2752843745352	7.61031303945033	7.17275736680208	7.24532232106924	7.23897192892534	7.20484727021447	-0.211039051373513	0.271890743204473	0.583498996308113
Merged-chr7-3295861-4	chr7	3295756	3295956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001093766, intron 1 of 1)	intron (NM_001093766, intron 1 of 1)	2828.0	NM_001093766	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	6.89837027010442	6.80995986098979	6.54730713915731	6.89925283334995	6.83968793733875	6.67292659330321	6.77206236053513	6.52560489410845	-0.127461758619871	0.545213544316624	0.795786194536872
Merged-chr16-13671360-4	chr16	13671253	13671453	+	851.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025653)	promoter-TSS (NM_025653)	-505.0	NM_025976	67118.0	Mm.223689	NM_025653	ENSMUSG00000022684	Bfar	3010001A07Rik|3110001I22Rik|AI666707|AW107665|Bar|Rnf47	bifunctional apoptosis regulator	protein-coding	3.33952192565217	3.34248760541612	3.72099389537255	3.55271050003447	3.68644214830148	3.57559385377626	3.44784034790716	3.67083690161167	0.324915392008415	0.516226362266939	0.778022424546552
Merged-chr5-137116233-4	chr5	137116144	137116344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201373)	promoter-TSS (NM_201373)	-37.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	5.90442226641693	6.02146111095755	5.57335113475982	5.72540799644738	5.93513177229457	5.83505295383992	6.08082819711042	5.87859847076009	0.197656665185723	0.438176510541863	0.726297851003868
Merged-chr1-171380053-4	chr1	171379932	171380132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122680, intron 1 of 7)	intron (NM_001122680, intron 1 of 7)	-8928.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	6.95156862285625	7.2429507377632	6.90209094209793	6.64424241217273	6.58592038612704	6.75692848591927	6.68728381217104	6.5912703150045	-0.41077339458711	0.0655555821250063	0.272573209888184
Merged-chr4-108405936-4	chr4	108405847	108406047	+	954.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024198, intron 1 of 2)	intron (NM_024198, intron 1 of 2)	766.0	NM_024198	67305.0	Mm.20164	NM_024198	ENSMUSG00000028597	Gpx7	3110050F08Rik|AI327032|GPX6	glutathione peroxidase 7	protein-coding	4.20622243399528	4.70540074170759	4.53838071947552	4.49486002315355	4.70524337976736	4.58280946536535	4.7094667662557	4.86481627440097	0.473875732844355	0.189044581996438	0.487836866980549
Merged-chr13-119488457-4	chr13	119488364	119488564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027974)	promoter-TSS (NR_027974)	-80.0	NR_027974	67304.0	Mm.474382	NM_026084	ENSMUSG00000074635	3110070M22Rik	-	RIKEN cDNA 3110070M22 gene	ncRNA	7.69732038830969	7.67743086229616	7.78763279067876	8.07269628018696	8.11205752633068	7.46369513914632	8.32578166419753	7.53256733821446	0.119942552103063	0.612183247114966	0.832680684364583
Merged-chr19-34637066-4	chr19	34636972	34637172	+	873.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053217, intron 1 of 2)	Lx5|LINE|L1	3671.0	NM_053217	112419.0	Mm.440727	NM_053217	ENSMUSG00000067297	Ifit1bl2	2010002M12Rik|AW412491|Ifit1b	interferon induced protein with tetratricopeptide repeats 1B like 2	protein-coding	4.00141899231888	4.06986330821959	3.90501251288272	3.82964344178217	3.96941720704523	3.97401998999748	3.93775595128667	3.90276716734105	0.000727237256164564	0.998638285015488	0.99941052934477
Merged-chr4-150546922-3	chr4	150546824	150547024	+	880.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	105250.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	3.91632403096159	3.53667122243697	3.91694276280316	4.21241143718006	3.36264529328743	3.27260259278653	3.60509324807803	3.67184511021404	-1.38350313320789	0.00997797555554509	0.0788058741338016
Merged-chr1-43322263-4	chr1	43322146	43322346	+	927.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-123505.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	4.64903203090099	4.65371204813105	4.90724900501026	4.2820875928732	5.02485603853868	5.11058640317856	4.66780423519715	4.5186048188726	0.481987582616341	0.207417074410172	0.511447929091922
Merged-chr2-132109599-4	chr2	132109466	132109666	+	969.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	B3A|SINE|B2	35542.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	4.27167013154468	4.24321060064023	4.18276375630292	4.33162900208027	4.39132887272768	4.15888463443078	4.01931877499532	4.22574041690375	-0.120266575365899	0.762904574434476	0.907015239695587
Merged-chr12-17762315-3	chr12	17762184	17762384	+	733.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	71475.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	3.88828196862968	3.23280151990342	3.40436922875957	3.74737401397456	3.38838026636831	3.78957211467419	3.06433455415859	3.21351879619853	-0.669484200296038	0.271122222924538	0.582921787758886
Merged-chr16-90386930-3	chr16	90386842	90387042	+	920.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 1 of 10)	CpG	545.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	3.36349919672238	3.65420193730084	3.53353822734318	3.5754722632691	3.34305206332202	3.47742463896393	3.29110839987061	3.68102507533976	-0.288610030967778	0.573955266593447	0.811973307930812
Merged-chr2-117444501-3	chr2	117444402	117444602	+	760.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101625.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	3.6691651598613	3.53342284361887	3.72183520014763	3.82230493450119	3.32421645391235	3.61586861769308	3.84937054910301	3.90893026973751	-0.0219296332927678	0.965410371581822	0.987769412779284
Merged-chr7-102015061-4	chr7	102014966	102015166	+	783.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133947)	TTS (NM_133947)	3089.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	4.05675078048307	4.01512213659126	4.23192732984282	4.2338035381408	4.1346762615943	4.13270736412284	3.8400610392195	3.61475102909176	-0.49793534506813	0.269959733528965	0.581767511754897
Merged-chr11-50114552-4	chr11	50114450	50114650	+	946.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 7 of 7)	B3|SINE|B2	-16810.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	4.9771353341558	4.83019779765695	4.069574714149	4.14724388639239	4.66993356250571	4.79769476531074	5.04211363045084	4.87777481020663	0.609882701948667	0.151850713735789	0.435619134007727
Merged-chr16-76370822-4	chr16	76370723	76370923	+	848.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	2226.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	3.7904739695892	4.04507071536072	3.90071176053279	3.85097424476432	4.39787344624256	3.9682519886858	4.03222734522705	4.18059645426837	0.708989012804744	0.0969581561907076	0.341129187855191
Merged-chr16-57607231-3	chr16	57607144	57607344	+	706.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025599)	promoter-TSS (NM_025599)	-377.0	NM_025599	66497.0	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	3.91237110661671	3.89697443581318	3.91298872077776	3.58078419275865	3.49707905654298	3.73407172315479	3.36086850781302	3.55682059861858	-0.891591828732341	0.0749783884470896	0.295426886868275
Merged-chr5-21786727-4	chr5	21786629	21786829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011188, exon 2 of 13)	exon (NM_011188, exon 2 of 13)	1446.0	NM_011188	19181.0	Mm.2462	NM_011188	ENSMUSG00000028932	Psmc2	-	proteasome (prosome, macropain) 26S subunit, ATPase 2	protein-coding	6.62228659943482	6.54966288492382	6.16533228109412	6.45601591081151	6.55531537732218	6.60108759560042	6.82583369490195	6.86845568548919	0.368552109659958	0.0974234558988622	0.342005234621681
Merged-chr8-116974388-4	chr8	116974366	116974566	+	948.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027103, intron 1 of 2)	intron (NM_027103, intron 1 of 2)	4187.0	NM_001357254	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	4.31386521894146	4.56268756285729	4.8130542568363	4.44925364354469	3.96600146406885	4.23983695155359	4.65676352030925	4.56604563607342	-0.376996882184539	0.369046017659552	0.673408697984754
Merged-chr17-11353000-3	chr17	11352888	11353088	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 4 of 6)	MLTR25A|LTR|ERVK	512629.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	4.4054762380385	3.84036041768688	4.62154789211094	4.93681298205324	3.84513242193774	3.60333674289871	4.07996745503867	4.04474655774742	-1.55070594910012	0.00238656339312786	0.0267559661096146
Merged-chr1-181210696-4	chr1	181210617	181210817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145514, intron 1 of 13)	intron (NM_145514, intron 1 of 13)	1261.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	5.27248518052487	5.08541041488404	5.14881956799483	5.02977527090224	5.22591260265766	5.11333755113183	5.33250575361722	5.35560686110288	0.249326050737293	0.396475080345464	0.69519327480908
Merged-chr8-71464802-4	chr8	71464712	71464912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053162)	promoter-TSS (NM_053162)	-114.0	NM_053162	94065.0	Mm.29489	NM_053162	ENSMUSG00000034880	Mrpl34	0610007O17Rik|D8Bwg1484e	mitochondrial ribosomal protein L34	protein-coding	8.45674903487057	8.51747774237478	8.48289663552618	8.14819032117456	8.42859104029093	8.62589885263816	8.24198485442682	8.40152371093379	0.0350596224364796	0.838841662555653	0.938853173799904
Merged-chr11-101910412-2	chr11	101910312	101910512	+	999.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16058.0	NM_010791	17285.0	Mm.3404	NM_010791	ENSMUSG00000001493	Meox1	AI385561|D330041M02Rik|Mox-1|Mox1	mesenchyme homeobox 1	protein-coding	3.36519854133936	3.1994320324323	3.11168223883752	3.50133065761232	3.6452795507012	3.53636419430636	3.51354123128809	3.42029204181124	0.732384855091729	0.17165231505372	0.465041682838228
Merged-chr1-165667104-4	chr1	165666999	165667199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-32558.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	7.6005218484491	7.43312003929075	8.0604973490989	8.12110607712079	7.57300593507214	7.55534993469888	8.02811151323095	7.67453523430173	-0.158869092435625	0.479129132549447	0.754929330951568
Merged-chr5-135471924-4	chr5	135471828	135472028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	73194.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	7.56575960882698	7.26866163416871	7.44418444626177	7.51495949537265	6.85744702551794	7.03271024615912	7.09555686300085	7.19547978243708	-0.556726670081454	0.00350267809764943	0.0360806258050056
Merged-chr10-80114728-4	chr10	80114623	80114823	+	981.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1080.0	NM_001301853	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	4.95340951324948	4.73177506000156	4.88000704344375	4.49688561650445	5.5298657224519	5.2964034301602	5.37728088498131	4.83801976450105	1.03118742006091	0.00254342621355428	0.0281042748499373
Merged-chr12-44919831-4	chr12	44919728	44919928	+	867.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144552, intron 2 of 5)	intron (NM_144552, intron 2 of 5)	154655.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	4.46306341190266	4.35348568349316	5.09962620986156	4.74339997963844	4.44062419734129	4.45615596900514	4.30755041121165	4.50366164025998	-0.596076290913693	0.130954451428033	0.402847904555962
Merged-chr6-37441791-1	chr6	37441691	37441891	+	1000.0	f0_balb.idr	exon (NM_178661, exon 1 of 12)	exon (NM_178661, exon 1 of 12)	357.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	4.70698298596119	4.81747421736905	5.2851358350901	4.80194110340283	4.94498619841082	5.08116606380941	5.02083674966287	5.25388536951285	0.317125105962216	0.34194128681905	0.650915673258802
Merged-chr6-135198049-4	chr6	135197949	135198149	+	972.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028982)	promoter-TSS (NM_028982)	-51.0	NM_001362111	74525.0	Mm.34182	NM_028982	ENSMUSG00000030207	Fam234b	8430419L09Rik|mKIAA1467	family with sequence similarity 234, member B	protein-coding	5.1723153515814	4.96541229419226	4.48802644031776	5.25576875875668	5.06774770040431	5.25014397493927	5.37424561099774	5.34454422931749	0.45042511379088	0.193537809620452	0.493731393226286
Merged-chr14-34502770-4	chr14	34502693	34502893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009758)	promoter-TSS (NM_009758)	-247.0	NM_009758	12166.0	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK-3|ALK3|AU045487|BMPR-1A|BMPR-IA|Bmpr|SKR5	bone morphogenetic protein receptor, type 1A	protein-coding	6.468647032172	6.31033004988902	5.84430354683477	6.15744117793611	6.67112257873091	6.5604368687723	6.38654316668307	6.46515905207347	0.471261481903271	0.0477628079070411	0.225459838451839
Merged-chr3-126612948-4	chr3	126612867	126613067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	Lx5c|LINE|L1	16016.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	5.25620697486012	5.07894566713084	5.18620892256286	5.42045106191638	5.62046892014611	5.81800499387563	6.02239705763804	6.23684127242416	1.14719034379521	0.000107643435964055	0.00215910963972006
Merged-chr4-102955705-3	chr4	102955601	102955801	+	909.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285859, intron 17 of 23)	intron (NM_001285859, intron 17 of 23)	-30678.0	NM_001163767	67344.0	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	3.74698370116682	3.70857786583735	3.79276878146139	3.71063891576153	3.13318418741768	3.21873208641205	3.1693238113619	3.59924311537313	-1.57980158300929	0.00410199847791507	0.0408529662319178
Merged-chr14-70470424-3	chr14	70470340	70470540	+	781.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12923.0	NM_145981	105653.0	Mm.192598	NM_145981	ENSMUSG00000003469	Phyhip	AW049870|C630010D02Rik|Lnap1ip|PAHX-AP#1|PAHX-AP1	phytanoyl-CoA hydroxylase interacting protein	protein-coding	3.04202623700227	3.19729710014564	3.04236919231056	3.08185581395926	3.25226668264432	3.2731876097418	3.09323870958407	3.16148094133784	0.412324809837592	0.451410212239629	0.736036273812354
Merged-chr11-121236772-1	chr11	121236672	121236872	+	1000.0	f0_c57.idr	promoter-TSS (NM_026272)	promoter-TSS (NM_026272)	-464.0	NM_026272	67608.0	Mm.291832	NM_026272	ENSMUSG00000000056	Narf	4430402O11Rik	nuclear prelamin A recognition factor	protein-coding	6.55725649815287	6.68080717856938	6.10081812628645	6.11681223454768	6.44016123609274	6.92608428490851	6.68875982249329	6.689942722678	0.44955741430854	0.072750617115357	0.290150511327058
Merged-chr13-91362134-3	chr13	91362047	91362247	+	810.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25938.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	4.45287903841944	4.05264464250279	3.9219792131912	4.05599753328665	3.93544119527887	3.88038924391328	3.80117177292353	3.69924904392002	-0.813201498919859	0.0735967315055983	0.292280407958321
Merged-chr11-32348314-3	chr11	32348216	32348416	+	912.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177364, intron 1 of 12)	intron (NM_177364, intron 1 of 12)	505.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	3.18492226119878	2.89992746579322	2.91778906243334	2.62119576305334	3.62793279053525	3.47428448716239	3.28761310622995	3.35399802241426	2.16884322227733	0.000358967453939618	0.00587378032275128
Merged-chr1-128102759-4	chr1	128102646	128102846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027678)	promoter-TSS (NM_027678)	255.0	NM_001357573	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	7.38313424372853	7.58849317399658	7.25123775436555	7.72932323537758	7.86815396672621	8.09415981128601	7.64531336495427	8.04196603106163	0.53422811575416	0.00719915462786887	0.0621772240563211
Merged-chr7-64049885-4	chr7	64049768	64049968	+	939.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103967.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	5.20282059422068	4.60015582940452	4.84987208453871	4.75612917587633	4.46477246185264	4.6311683125068	4.5220418638594	4.45017952478378	-0.746987903987615	0.0417259722958027	0.206883044165711
Merged-chr8-45416104-4	chr8	45415991	45416191	+	807.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	-5472.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	3.7603430408833	3.65142149283646	3.61118272185374	3.45242507433201	3.62088242493497	3.42868566138762	3.59670413749489	3.66094746404923	-0.0985595423811664	0.839479119361294	0.938941281871456
Merged-chr4-132079764-4	chr4	132079635	132079835	+	912.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4422.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	4.17144597515915	4.21708967557695	4.06654886264628	4.13374492322032	4.41329830169087	4.80510730280814	4.46518891327455	4.70190363833756	1.05179730656649	0.00571570382220063	0.0524653682636671
Merged-chr15-101327447-4	chr15	101327340	101327540	+	978.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34228.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	4.83696067871999	4.8615101605751	4.7112664452071	5.09577239638209	5.10103829572526	5.58152727077124	5.22139019096279	5.24400011887689	0.732825766963868	0.0256225651755559	0.151000874865946
Merged-chr15-7931791-1	chr15	7931691	7931891	+	1000.0	f0_balb.idr	intron (NM_001081402, intron 10 of 17)	intron (NM_001081402, intron 10 of 17)	116241.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	3.43550238114085	3.36780821259034	3.95302235478222	3.70685090722109	3.58854281455874	3.22047196616302	3.30340779278697	3.49079471605619	-0.728987201486819	0.186190809777869	0.484113766444254
Merged-chr13-9428135-2	chr13	9428035	9428235	+	967.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	151610.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	2.81717718114227	2.77668803908596	2.87699925595762	2.72660583362513	2.77022097484432	2.65092184462713	2.80745910157363	2.81611737271767	-0.150536983164076	0.808893396593864	0.92618391500289
Merged-chr4-128884503-2	chr4	128884403	128884603	+	671.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178110, exon 1 of 5)	exon (NM_178110, exon 1 of 5)	363.0	NM_178110	67525.0	Mm.30653	NM_178110	ENSMUSG00000041000	Trim62	6330414G21Rik|AI450348|Dear1	tripartite motif-containing 62	protein-coding	3.25322947971997	3.19115812268165	2.99496423834193	3.22576177487919	3.18633708372707	3.36720932599019	3.18210332013	3.69356620800914	0.714332349040183	0.204148436102144	0.50737576212243
Merged-chr19-4989198-4	chr19	4989074	4989274	+	847.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153553, intron 1 of 7)	intron (NM_153553, intron 1 of 7)	797.0	NM_153553	225872.0	Mm.287867	NM_153553	ENSMUSG00000045903	Npas4	LE-PAS|Nxf	neuronal PAS domain protein 4	protein-coding	3.71880177292424	3.9965617693887	3.7192725689316	3.84045946656311	4.18218205872976	4.20947963508688	4.0665341410321	4.29093418931303	0.959502390250611	0.0232994718989413	0.141540762165635
Merged-chr4-131904733-2	chr4	131904633	131904833	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_102393, intron 4 of 4)	RSINE1|SINE|B4	15296.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	2.57507732580889	2.48020419613272	2.51484408009472	2.20333950938708	2.64041554459344	2.3411451544124	2.15724586831985	2.38334043689211	-0.289220477103864	0.714900995513158	0.886003030420421
Merged-chr10-85194696-4	chr10	85194608	85194808	+	988.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-9654.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	5.42713400225507	5.3884332736178	5.11486387925954	4.87077266027802	5.78033102325547	5.39328200123362	5.40075912968035	5.33818823058435	0.533592070679311	0.0924942732101458	0.332721363887815
Merged-chr5-104860152-3	chr5	104860039	104860239	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039231)	promoter-TSS (NM_001039231)	-71.0	NM_001039231	626391.0	Mm.385405	NM_001039231	ENSMUSG00000072774	Zfp951	C230055K05Rik|Gm38611	zinc finger protein 951	protein-coding	3.40655564935686	3.28517206175076	3.3230523520642	2.45821100542377	4.96126859326079	4.91505316144248	5.31909038506595	4.69940241789638	7.72240666022476	2.22424577359074e-20	7.83760346130768e-18
Merged-chr15-77358876-4	chr15	77358830	77359030	+	973.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40180.0	NM_029419	75761.0	Mm.232636	NM_029419	ENSMUSG00000010601	Apol7a	9130022K13Rik|Apol3	apolipoprotein L 7a	protein-coding	3.67603326583555	4.25251392202478	3.79091836073187	3.91489889938063	4.11894698482834	3.965255554729	3.77616144657866	3.99111287438437	0.11622376120029	0.800519773063567	0.923040237917604
Merged-chr15-55356187-4	chr15	55356106	55356306	+	851.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 5 of 47)	intron (NM_181277, intron 5 of 47)	48456.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	3.99216436338884	4.08430939559701	4.42128361218126	4.20817140499122	3.67161785068957	4.11688053060088	3.87140084426903	4.30446566170294	-0.473534132402956	0.298176610962711	0.610320314800708
Merged-chr2-58814665-4	chr2	58814571	58814771	+	980.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M8|LINE|L1	59487.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	4.85954958351398	4.35055861541701	4.89568470772398	5.16011819044837	4.68719337230872	4.84345964714263	4.93926994184549	4.92670725476036	-0.031247187788666	0.933143365249536	0.97591593099567
Merged-chr7-130074066-4	chr7	130073959	130074159	+	826.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111894.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	3.77061528673338	3.86912205338184	3.82700123748045	4.09221884822246	4.25183605473147	3.77034710668329	4.05737949248144	4.28004172950138	0.534185798607492	0.237306521846337	0.547492574824985
Merged-chr1-59764055-4	chr1	59763901	59764101	+	993.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007561)	promoter-TSS (NM_007561)	-278.0	NM_007561	12168.0	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	4.7979102914156	4.71627615917424	4.83488693036265	4.7689142665909	4.68557193597575	4.77612614853493	4.91345191827643	4.79551903039588	0.02608045536815	0.936586983923709	0.977053317827757
Merged-chr17-28013424-4	chr17	28013319	28013519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 12 of 24)	intron (NM_181413, intron 12 of 24)	67165.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	6.09974801415492	6.28344793685235	5.76503123287034	5.8542098103749	5.7973402388055	5.77996152981383	6.06956386770783	5.85948901278414	-0.210090199091985	0.422701688798219	0.71487373429267
Merged-chr1-171283467-4	chr1	171283383	171283583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013919, intron 8 of 12)	intron (NM_013919, intron 8 of 12)	-2297.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	5.45150413928256	5.71790010428453	5.42241142555694	5.73685101461389	5.69328609213275	5.93999345321036	5.64304346872408	5.58970096727471	0.19297846667428	0.478406778100604	0.754532850325209
Merged-chr12-24600985-4	chr12	24600811	24601011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145890, intron 6 of 13)	intron (NM_145890, intron 6 of 13)	20192.0	NM_145890	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	5.86398343465914	6.46171323092445	5.91245615391234	5.80704139647578	5.94052539443127	6.24056327169888	5.99299520422101	5.81161081922105	-0.0536085426732216	0.846719552430557	0.941987667932478
Merged-chr5-24445238-4	chr5	24445116	24445316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023229)	promoter-TSS (NM_023229)	19.0	NM_023229	66587.0	Mm.28123	NM_023229	ENSMUSG00000028959	Fastk	0610011K02Rik|610011K02Rik	Fas-activated serine/threonine kinase	protein-coding	7.34027890740173	7.22866185829958	7.6963085333969	7.54692673930472	7.12118210610985	7.43395079401492	7.44049654477176	7.17234950791254	-0.231643773740867	0.247719494156259	0.558890166868946
Merged-chr15-25282113-4	chr15	25282008	25282208	+	930.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	131656.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	4.5597444783378	4.25195446057841	4.60025907472809	4.62682252088451	4.68764167810608	4.60760700811679	4.69012837968648	4.5165253537694	0.232978745821559	0.51771658599084	0.779011829301328
Merged-chr6-54039549-3	chr6	54039465	54039665	+	969.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163640)	promoter-TSS (NM_001163640)	-367.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	4.31955834733197	4.17321219788478	4.36032446679157	4.09485698120475	4.12344632921107	4.17290947919647	4.17325851595639	3.94187452946308	-0.316634549152478	0.437092058755295	0.72545296017682
Merged-chr1-151345257-4	chr1	151345155	151345355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039511, intron 1 of 7)	CpG	757.0	NM_001039511	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	6.1885394660124	6.18765166126646	6.13046699478694	6.08898124326514	6.08971356991448	6.11100983572688	6.31947735228907	5.85735696084476	-0.0628448671064441	0.790236948326908	0.918828686312538
Merged-chr7-66125601-4	chr7	66125525	66125725	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081163, exon 2 of 3)	exon (NM_001081163, exon 2 of 3)	16110.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	5.20496800169885	5.07892206677653	4.9668031325011	5.71403658729317	5.20525198691333	5.02820730928212	5.14893996290846	5.10534791943446	-0.322896936338694	0.343499049725589	0.652223940577205
Merged-chr7-3614162-3	chr7	3614070	3614270	+	688.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175632, intron 2 of 4)	intron (NM_175632, intron 2 of 4)	1987.0	NM_175632	232790.0	Mm.358882	NM_175632	ENSMUSG00000054594	Oscar	mOSCAR|mOSCAR-M1|mOSCAR-M2|mOSCAR-M3	osteoclast associated receptor	protein-coding	3.91996339613906	4.12245458187968	4.01126853960441	3.88571904388138	3.96505540207948	3.6575469431862	3.64711013355831	3.40745701122981	-0.83825908695916	0.0889254271690046	0.325381910896163
Merged-chr19-17393489-1	chr19	17393389	17393589	+	622.0	f0_balb.idr	promoter-TSS (NM_019437)	promoter-TSS (NM_019437)	-554.0	NM_019437	54391.0	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	2.70036900829243	2.71174850600776	2.81661004787355	2.78810889644712	2.62611518117385	2.53299065780279	2.3510488151595	2.57209726407064	-1.20650730185881	0.0891159874915098	0.325695519388084
Merged-chr1-85114877-2	chr1	85114770	85114970	+	642.25	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-5017.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	3.2962997215998	3.28658871893328	3.139249980022	3.05954062528042	2.88996229132571	2.85768768186317	2.94960189028274	2.82320557454668	-1.36832531681686	0.0261470408772233	0.15309041890268
Merged-chr1-191278517-4	chr1	191278379	191278579	+	798.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39639.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	4.18750514122918	4.39743341930248	3.95694049681338	4.04648779581813	3.94110510868164	4.07974663993172	3.94051637261908	3.67393172415761	-0.643644872810361	0.148239180388442	0.429986395112813
Merged-chr1-67033426-4	chr1	67033296	67033496	+	902.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190984, intron 3 of 9)	intron (NM_001190984, intron 3 of 9)	5438.0	NM_001190984	14768.0	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	4.5426967289778	4.35357609376649	4.78840973560948	5.47682989620422	4.45586709469367	4.72209626898325	4.93744482475081	4.85741073539942	-0.2716794962604	0.534268925779034	0.789092355072849
Merged-chr11-115099685-3	chr11	115099590	115099790	+	897.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	8259.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	3.8139400593848	3.75548811886634	4.31613150287984	3.93252773543029	3.47743965026002	3.77018086946312	3.69304037534345	3.76001330771892	-0.874324364480926	0.0710876764593603	0.285968256816404
Merged-chr4-3650572-5	chr4	3650468	3650668	+	944.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5938.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	3.61779090452311	3.43416008439196	3.51759538108203	3.50675509750729	3.47984213600045	3.33444049030731	3.3952493630539	3.46199007815475	-0.327830425977069	0.511302187722856	0.775329749039735
Merged-chr17-27908192-3	chr17	27908097	27908297	+	626.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026836, exon 2 of 6)	5' UTR (NM_026836, exon 2 of 6)	1045.0	NM_026836	68776.0	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	3.59642104768105	3.71343650317354	3.27297030942384	3.09593944038682	3.41234714758104	3.32312818311452	3.19937386834445	3.33117089234782	-0.40786908455829	0.47260908753826	0.750726068237093
Merged-chr1-127213701-3	chr1	127213642	127213842	+	950.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	8756.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	3.51332466569339	3.44808544725092	3.63111768619194	3.36653033106115	3.89078254223742	3.96070415078644	4.03818200589076	3.78734507343959	1.34142291270955	0.00347305639044364	0.0358481265683567
Merged-chr14-19968906-4	chr14	19968805	19969005	+	986.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285908, intron 1 of 3)	B1F|SINE|Alu	7788.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	4.98384785075788	4.69391891730349	5.51721678656651	5.2362348345311	5.1896304474284	5.50765231984112	4.84663255705685	5.18455964724587	0.104703377960284	0.768659058683643	0.90939721515425
Merged-chr1-152902872-4	chr1	152902764	152902964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359257)	promoter-TSS (NM_001359257)	-218.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	7.46303647900836	7.77205184426488	7.3114128950393	7.18568787481466	7.58264403676677	7.75162757334975	7.54593397648949	7.70242069023659	0.264887735967577	0.184203604430079	0.481506733739574
Merged-chr12-86893901-4	chr12	86893807	86894007	+	955.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9093.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	4.3722366724436	4.15087881645338	4.28584621087871	4.16068874614277	4.36437477359064	4.16350419814167	4.58078231616936	4.49031349360585	0.413353356234441	0.284115184066136	0.596080237800185
Merged-chr19-36921844-3	chr19	36921745	36921945	+	850.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2246.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	3.47787264383172	3.24902272030294	3.14762228799449	3.41293488298303	3.99012321501461	3.76314215021815	3.81792661905177	3.69225579585045	1.54793250470451	0.00236855667219623	0.0266169080155124
Merged-chr1-130717513-4	chr1	130717407	130717607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178691, exon 1 of 2)	exon (NM_178691, exon 1 of 2)	180.0	NM_178691	226418.0	Mm.106553	NM_178691	ENSMUSG00000046404	Yod1	6330564D18Rik|9930028C20Rik|Hshin7	YOD1 deubiquitinase	protein-coding	6.95580679761467	6.99944689822522	6.65534746305575	6.7978827668115	7.09002784704158	7.37587861325438	6.99588308100506	6.61774821171491	0.262889542187166	0.247864031603143	0.559021353152095
Merged-chr1-136142884-4	chr1	136142772	136142972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	MIR|SINE|MIR	11482.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	6.82127575816876	6.81660074885204	7.62532146429476	7.59080551358804	7.0922315721594	6.75539543206891	7.5148367869594	7.29751412812946	-0.11423559423809	0.678035720992066	0.867974866493993
Merged-chr2-142610812-4	chr2	142610722	142610922	+	803.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	290642.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	3.77105613150823	3.85748894814892	3.77156495422474	3.94487923331696	4.01500373350788	4.09754177510293	4.20926324121987	3.59362459663742	0.421761282605997	0.358455229279525	0.664413367722986
Merged-chr13-93997182-4	chr13	93997105	93997305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60591.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	4.95514028101089	4.63320343502971	5.18434092014701	5.25209911952091	5.24393206749059	5.23180939129691	4.56622142610598	5.05545827269281	0.0370199472640731	0.919283942488473	0.970285021467879
Merged-chr10-94225573-2	chr10	94225474	94225674	+	933.125	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	26565.0	NM_025551	66414.0	Mm.27886	NM_025551	ENSMUSG00000020022	Ndufa12	2410011G03Rik|AW112974	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12	protein-coding	3.97900742397398	4.74028210194332	3.77979144004048	4.40684855808752	3.01900549521602	3.30657297907606	3.32831571387882	3.54319526213474	-3.37718377035673	2.54585355852621e-07	1.00250720443433e-05
Merged-chr9-64811148-4	chr9	64811066	64811266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162917, intron 1 of 34)	CpG	155.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	8.62654876042832	8.90481504197293	8.71196772157193	8.26243980899975	8.86682208839989	8.95263455394358	8.83990298841322	8.59464171121855	0.223099952579432	0.231508782904312	0.541094889386075
Merged-chr9-96537041-4	chr9	96536942	96537142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-58367.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	5.46703661856589	4.89109431840206	5.58738776473842	5.01551413629995	5.08063421628438	4.74067108569555	5.22305717061489	5.15275942315606	-0.366532481372848	0.294395815984021	0.606634274221694
Merged-chr15-100304848-4	chr15	100304817	100305017	+	979.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027334)	promoter-TSS (NM_027334)	100.0	NM_027334	70152.0	Mm.488086	NM_027334	ENSMUSG00000054619	Mettl7a1	2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1	methyltransferase like 7A1	protein-coding	4.6624197207106	4.35775838787286	4.29326164371987	4.52894105097471	4.72591035126155	4.26752519537262	4.49127281105674	4.5486609893494	0.131930125380485	0.728117077588587	0.891779294267982
Merged-chr11-78983133-4	chr11	78983007	78983207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010708, intron 1 of 10)	intron (NM_010708, intron 1 of 10)	1817.0	NM_001159301	16859.0	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	6.35877674309125	6.34128459437577	6.23042334311787	6.36882690540507	6.10451383903847	6.17341162944906	6.217835811354	6.50362308573338	-0.114855917669416	0.614128164726419	0.833658125917707
Merged-chr18-76380341-1	chr18	76380241	76380441	+	634.333313	f1_c57bl6.idr	Intergenic	Intergenic	117896.0	NM_001311070	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	2.17526196637471	2.3136506326539	2.2516542867192	1.99708341465761	2.46275862808723	2.49855419278078	2.50912485613533	2.51813496812571	2.01036611198016	0.00861996739311889	0.0708778973349093
Merged-chr5-139466567-3	chr5	139466456	139466656	+	742.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-6022.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	3.45760002939329	3.42816215855305	3.3418609801983	3.24790858222565	3.55657340436859	3.39272540919489	3.59932608718597	3.66080531541657	0.658376405311448	0.184862142283204	0.482566571028884
Merged-chr10-121446025-4	chr10	121445925	121446125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	30225.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	5.7393424903437	6.14523988405667	5.6168896464654	5.336627598518	5.493571555937	5.59788486451587	5.36350684802443	5.35523170430108	-0.472986329264534	0.127468887823361	0.397298592914087
Merged-chr7-44467975-4	chr7	44467874	44468074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205070)	promoter-TSS (NM_001205070)	-6.0	NM_001360604	66124.0	Mm.358691	NM_025368	ENSMUSG00000038695	Josd2	1110007C05Rik	Josephin domain containing 2	protein-coding	7.85917045692713	7.96757786107249	7.55300371179028	7.88499252905407	7.95150154376688	7.83720578378192	8.28441201542313	7.7307331918777	0.183263490712287	0.347493232020799	0.655506340921964
Merged-chr9-5309531-4	chr9	5309412	5309612	+	946.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007609, intron 1 of 8)	intron (NM_007609, intron 1 of 8)	663.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	4.50600238919468	5.00515334114815	5.1684390469129	4.86490941540289	4.68249792704955	5.12262111875269	5.19796379628796	4.40470626412177	-0.0387016085298254	0.920914222339349	0.970697193120266
Merged-chr17-25579121-4	chr17	25579039	25579239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029624)	promoter-TSS (NM_029624)	-35.0	NM_029624	76483.0	Mm.12787	NM_029624	ENSMUSG00000002279	Lmf1	2400010G15Rik|AW822050|Tmem112|cld	lipase maturation factor 1	protein-coding	7.91553731600699	7.73617196781896	7.50754151382754	7.4693888479928	7.76431999299243	8.02371073948298	7.57053306603572	7.39335442277337	0.0585270128302551	0.77925420744805	0.913841690258744
Merged-chr9-16319182-4	chr9	16319080	16319280	+	792.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	59051.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	3.58048422121686	3.18738012437973	3.21484230802433	3.60182740321188	3.87666167601236	3.58551463254545	3.71523142424531	3.68114991015274	0.948862931004659	0.0731512650845487	0.29111226084385
Merged-chr16-44190294-4	chr16	44190213	44190413	+	879.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029889, intron 1 of 7)	intron (NM_001029889, intron 1 of 7)	16916.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	4.49557973751165	4.19166379152034	4.32829176149011	4.56682562239983	4.77155097514008	3.96953554665463	4.30916843639244	4.49337711428804	0.0509171333800629	0.905041020129343	0.964702139535866
Merged-chr1-84935881-4	chr1	84935773	84935973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027921)	promoter-TSS (NM_027921)	-790.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	5.68256841571361	5.50302587032141	5.5580321734354	5.87081997774098	5.29316934263903	5.37215251853994	5.3317399692354	5.44393085689707	-0.553353553131611	0.0472912015919047	0.223872069573702
Merged-chr5-146792347-4	chr5	146792263	146792463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	2593.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	5.90753404845259	5.60922003747988	5.54547777140499	5.9233555157979	5.69933394638304	5.63519401713108	5.46078666317572	5.54159872851221	-0.294952400504909	0.277824897645766	0.589858344900601
Merged-chr8-13675807-3	chr8	13675772	13675972	+	903.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	1715.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	3.32585253244616	3.05346580741842	3.21935409699343	3.11118213648742	3.03576739449001	3.14979212508387	2.96526275592042	3.27210346650658	-0.268862590027162	0.635716697952462	0.845870456193819
Merged-chr2-27504668-3	chr2	27504553	27504753	+	940.422241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10494.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	3.80720587357593	3.96626381704286	4.19078369625516	3.78998832420594	3.26990095522599	3.37843766647662	3.6891900484822	3.75487041426055	-1.27535238338396	0.0142514597501314	0.101167313608717
Merged-chr9-45181916-4	chr9	45181821	45182021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145403, intron 5 of 12)	intron (NM_145403, intron 5 of 12)	-13845.0	NM_001198971	408059.0	Mm.249297	NM_001198971	ENSMUSG00000091996	BC049352	SMIM35	cDNA sequence BC049352	protein-coding	6.04152503257254	6.40523416679152	5.65000024171006	5.33480767659714	6.58108654751756	6.3761212632455	5.96872441796468	5.61701878852881	0.426400913702233	0.220926410531891	0.52902341133927
Merged-chr9-66114116-4	chr9	66114007	66114207	+	855.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019727, intron 1 of 14)	intron (NM_019727, intron 1 of 14)	10779.0	NM_019727	56440.0	Mm.271891	NM_019727	ENSMUSG00000032382	Snx1	-	sorting nexin 1	protein-coding	4.11719784325919	4.39020670124128	4.53094432532155	3.89620944995997	4.16485979544235	4.03016955520957	4.32107324985064	4.16315650765161	-0.173787507823419	0.688835817754237	0.872980495973815
Merged-chr18-34777542-6	chr18	34777471	34777671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081256, intron 1 of 23)	CpG	563.0	NM_001081256	277250.0	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	5.28069398897244	5.40416989499969	5.49093967401915	5.2949004631512	5.60350437915811	5.52067549179871	5.71101182052264	5.51434387869797	0.396089528854844	0.141664767405887	0.418816599528155
Merged-chr2-126934238-4	chr2	126934122	126934322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023220)	promoter-TSS (NM_023220)	-987.0	NM_023220	66552.0	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	6.70825601845714	7.12930011321286	6.75260129659368	6.45907350256156	6.83416001573425	6.71416278880389	6.36242354495998	6.33299772783308	-0.275752635230168	0.274600087383659	0.586378652382967
Merged-chr11-32217094-4	chr11	32217022	32217222	+	771.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010117, intron 1 of 17)	intron (NM_010117, intron 1 of 17)	5171.0	NM_010117	13650.0	Mm.11545	NM_010117	ENSMUSG00000020282	Rhbdf1	C16ORF8|Dist|Dist1|Egfr-rs|mKIAA4242	rhomboid 5 homolog 1	protein-coding	4.32301183916557	3.7425924394439	3.67006806774646	3.74647823983061	3.82912999773283	3.96283751100829	4.1893546834104	3.98912893424534	0.289232430198689	0.539423770389252	0.792185453341103
Merged-chr11-110967847-4	chr11	110967743	110967943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252207)	promoter-TSS (NM_001252207)	-190.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	5.77300241375874	5.82531974230252	5.60681045917625	6.09628987960894	6.26830380717859	6.20874738641538	6.44406405346168	6.00752851464249	0.595730202510982	0.0221512893354939	0.137128772274406
Merged-chr14-33247324-3	chr14	33247228	33247428	+	672.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	30505.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	3.62571080590603	3.48328457328365	3.46928290578468	3.43651994969435	3.19282138113752	3.46709277376539	3.5095323594714	3.62407167185385	-0.17085423639397	0.73953935949814	0.89733851675221
Merged-chr16-30155208-3	chr16	30155103	30155303	+	999.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89846.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	3.47102155326141	3.42628218771212	3.47144927362911	3.12884944864974	5.18481000920155	5.01992679298302	4.99409937472916	5.33645517035646	4.80525180420619	3.50191658382146e-18	9.09718688028567e-16
Merged-chr4-155611507-3	chr4	155611414	155611614	+	657.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177186, intron 3 of 8)	intron (NM_177186, intron 3 of 8)	10098.0	NM_177186	320541.0	Mm.306018	NM_177186	ENSMUSG00000042202	Slc35e2	A530082C11Rik|AI957035	solute carrier family 35, member E2	protein-coding	3.07765333807509	3.46802914543268	3.07798558866692	3.21264065755979	3.13091926942698	3.25614435829229	3.69128224531723	3.32269778220716	0.515303789509726	0.368222599797341	0.672699461808298
Merged-chr12-83487830-4	chr12	83487727	83487927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001267626)	promoter-TSS (NM_001267626)	-91.0	NM_058212	70127.0	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	6.46720036553114	6.9034505923095	6.33957393654068	6.96662103171411	6.41557960691474	6.53647580603379	6.71493495732747	6.51509627892055	-0.242221058818071	0.317926022570429	0.629791171116012
Merged-chr14-55479011-7	chr14	55478921	55479121	+	948.257141	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030686, exon 1 of 5)	exon (NM_030686, exon 1 of 5)	263.0	NM_030686	28200.0	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding	3.97607613697561	4.05728126689511	4.07092037433806	3.85610194957649	3.93979595353982	4.04934774962173	3.6319201689377	4.27688627963989	0.0189471476219307	0.966452738918479	0.988139972127125
Merged-chr9-37406574-3	chr9	37406484	37406684	+	730.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001309390, intron 10 of 17)	intron (NM_001309390, intron 10 of 17)	4687.0	NM_001309390	74144.0	Mm.485070	NM_028783	ENSMUSG00000032125	Robo4	1200012D01Rik|AI593217	roundabout guidance receptor 4	protein-coding	3.36281980477517	3.49270748650222	3.47910002438796	3.3811506149008	3.62693357542808	3.34855193589816	3.40972052780207	3.81507853209726	0.459595056603906	0.36348832170273	0.668574361907056
Merged-chr11-105126402-4	chr11	105126300	105126500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172567)	promoter-TSS (NM_172567)	-25.0	NM_172567	52686.0	Mm.270091	NM_172567	ENSMUSG00000020691	Mettl2	2810438F06Rik|AW493404|C130031G21Rik|D11Ertd768e|METL|PSENIP1	methyltransferase like 2	protein-coding	6.82117662046152	6.82618133200212	6.48719846069014	6.41575337042704	6.71737086393005	6.88651219982302	6.58586686371857	6.58311411411022	0.0822069290771249	0.713269433376711	0.885280331946177
Merged-chr2-9879693-4	chr2	9879556	9879756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1056.0	NM_001355112	14462.0	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	6.74365713992811	7.11292570410989	6.74484270630154	7.06210228056667	6.7347139644227	6.54918226740446	6.83608317386223	6.79762370228946	-0.286153944539751	0.176526341648562	0.471675681226884
Merged-chr7-44305304-4	chr7	44305198	44305398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009131, intron 3 of 3)	intron (NM_009131, intron 3 of 3)	1661.0	NM_009131	20256.0	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding	7.89358949640942	7.90568006400423	7.67437595168516	7.68069815463136	8.36601128984301	8.44556151283663	8.45613576655482	8.34290588772546	0.78699704400331	7.79210357635547e-07	2.78570638102163e-05
Merged-chr6-149141522-4	chr6	149141439	149141639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177101)	promoter-TSS (NM_177101)	26.0	NM_001252095	320204.0	Mm.274099	NM_177101	ENSMUSG00000039958	Etfbkmt	4833442J19Rik|AI256744|ETFB-KMT|Mettl20	electron transfer flavoprotein beta subunit lysine methyltransferase	protein-coding	7.64485238159555	7.57115171554995	7.1930643313259	7.73570349483351	7.4948361269987	7.42872473581229	7.66505744567727	7.42506942185528	-0.0714623495958305	0.713326024133667	0.88532630847175
Merged-chr16-91869806-4	chr16	91869720	91869920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	61810.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	8.08638524316602	8.40408613790354	8.35742708263903	8.1401604768979	8.0877881692913	8.29106092846188	8.27013039047648	8.23021783741007	-0.042039220442932	0.798672081664464	0.922179542886722
Merged-chr14-103016109-4	chr14	103016007	103016207	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	17696.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	6.0338043235846	6.81344983792576	6.51419133250871	5.90104952357098	6.2707907877822	6.37893727897384	6.06909167020321	5.70043983838007	-0.35181148772123	0.252352374798851	0.563645884616847
Merged-chr4-126753607-4	chr4	126753577	126753777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011986)	promoter-TSS (NM_011986)	88.0	NM_001355412	26562.0	Mm.206206	NM_011986	ENSMUSG00000028833	Ncdn	AU042419|MMS10-AE|Ms10ae|mKIAA0607|norbin	neurochondrin	protein-coding	6.87567403502515	6.87104464506062	7.08701628115026	6.67040831399142	6.902032290558	7.11867444839299	6.60680737388088	6.96279698401439	0.0494782077733052	0.818983142794324	0.930670388443846
Merged-chr9-42306557-4	chr9	42306463	42306663	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42263.0	NM_172769	235293.0	Mm.32700	NM_172769	ENSMUSG00000032018	Sc5d	A830037K02|A830073K23Rik|Sc5dl	sterol-C5-desaturase	protein-coding	4.91159673872258	4.79066324334348	4.83559724380158	4.3391224802155	5.29504158679666	4.84969779340609	5.39925951020574	5.6075017095019	1.15883189368083	0.00109732963844975	0.014480316339491
Merged-chr9-105034168-4	chr9	105034066	105034266	+	993.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001357439, exon 16 of 16)	3' UTR (NM_001357439, exon 16 of 16)	-19102.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	5.52296116128813	5.13726244558384	5.73856602465194	5.43472037196629	4.99877357103909	5.58917761037326	5.17390868292306	5.38280605928058	-0.314349535670176	0.322436088770481	0.633955214699031
Merged-chr1-120121675-2	chr1	120121575	120121775	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007830)	promoter-TSS (NM_007830)	488.0	NM_001172074	73103.0	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	3.6196394666835	3.3887839844602	3.28712453636039	3.39870833868613	3.58746333422822	3.39953471553781	3.50433476523679	3.56826534545313	0.315440912448824	0.527872750398906	0.784584092112251
Merged-chr7-16229210-3	chr7	16229116	16229316	+	798.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7184.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	3.76184080387858	3.26700326939596	3.23921824812734	3.4654267178721	3.64719582961961	3.97716733814461	3.64735374379449	3.76008679025628	0.972831932178532	0.0578949817824972	0.252589881666118
Merged-chr10-30678285-4	chr10	30678176	30678376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 9 of 14)	intron (NM_001358842, intron 9 of 14)	-22409.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	5.92708974064339	5.42756753915868	6.01081563147827	5.78861420515159	5.735319548742	5.73513273410896	5.66508296068301	5.81230779401148	-0.103333979423758	0.70070313025975	0.879330200638978
Merged-chr7-135602464-4	chr7	135602343	135602543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316680, intron 2 of 20)	intron (NM_001316680, intron 2 of 20)	-3385.0	NM_001316679	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	5.46383588972493	5.39740937713889	5.12699825912468	5.57676057394145	4.692114546042	4.43534084708826	5.0017679509775	4.9874804834148	-1.17862363003589	0.00051866969420734	0.00794798496533568
Merged-chr16-78264758-3	chr16	78264670	78264870	+	937.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-9316.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	3.19129268229506	3.18954834047652	3.36190315721093	3.27594898107546	3.08448769911666	3.47473665811264	3.18046934435774	3.30586439395944	0.0223139714253205	0.96728696384544	0.988493062647944
Merged-chr15-87624147-1	chr15	87624047	87624247	+	808.0	f0_balb.idr	intron (NM_001252310, intron 1 of 3)	CpG	-1083.0	NM_134096	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	2.75111427779158	3.02477690500548	2.75146235797884	3.19927460801957	2.34035301383864	2.50165407612886	2.39374085682433	2.61997785072225	-2.97394844549333	0.000554398122253286	0.00838179777907109
Merged-chr2-164443223-4	chr2	164443105	164443305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011521)	promoter-TSS (NM_011521)	-17.0	NM_011521	20971.0	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	7.02696378508696	8.02022185245796	7.28900758602515	5.80191843812393	7.61745616491078	7.54614538937707	7.05360453163537	6.423126835404	-0.0383676950885222	0.953246294175076	0.983345411862723
Merged-chr12-76377335-4	chr12	76377230	76377430	+	932.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	7064.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	4.01191132396731	4.32113545601621	3.95922048862526	4.27997283956161	4.24969817029771	4.37660301451658	4.0954880797776	4.24760004098375	0.197452448256793	0.62990197310377	0.842508832582694
Merged-chr11-57801540-4	chr11	57801439	57801639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131042)	promoter-TSS (NR_131042)	-72.0	NR_131042	76516.0	Mm.28485	NR_131042	ENSMUSG00000087165	2010001A14Rik	-	RIKEN cDNA 2010001A14 gene	ncRNA	7.87947306819932	7.67629880817502	7.63115199354302	7.9543359069394	7.89182338163067	7.46337866184197	7.59377278430599	7.47960835806989	-0.222490594776529	0.246464055550302	0.557701710643913
Merged-chr14-77841670-2	chr14	77841571	77841771	+	668.875	f0_c57.idr|f1_c57bl6.idr	intron (NM_025384, intron 4 of 5)	intron (NM_025384, intron 4 of 5)	33246.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	2.55213882495807	2.49234057029398	2.55235883774103	2.16284234459058	3.59889475530069	3.5229077535499	3.17320758384825	3.39559360839808	7.35471296222202	2.61808811454723e-13	3.1372541061508e-11
Merged-chr19-29708255-4	chr19	29708166	29708366	+	931.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029993)	TTS (NM_029993)	10325.0	NM_029993	77836.0	Mm.138437	NM_029993	ENSMUSG00000024806	Mlana	A930034P04Rik|Mart1	melan-A	protein-coding	4.14755555453995	5.1253084505692	4.43150465077035	4.2944422698152	4.35133663836927	4.42714671464748	4.36840078187688	4.19730769678357	-0.504249781453421	0.254032043968753	0.565354934110368
Merged-chr16-17722774-4	chr16	17722618	17722818	+	987.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285886, intron 1 of 16)	CpG	182.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	5.74543006753755	6.46378359428439	6.62959865996917	5.96867351722207	6.08556697670644	6.19729672847351	5.89698073062061	6.36557647968199	-0.15080260660624	0.602585835687562	0.827756460571785
Merged-chr2-61812004-4	chr2	61811887	61812087	+	902.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009322, exon 6 of 6)	exon (NM_009322, exon 6 of 6)	7534.0	NM_009322	21375.0	Mm.308525	NM_009322	ENSMUSG00000035033	Tbr1	-	T-box brain gene 1	protein-coding	4.07572751577958	3.87264114234669	4.72665663854543	4.47374484020653	4.14465851957126	4.0326694988977	4.67116574864331	4.39933464173913	0.00683122823813716	0.988333152387849	0.995437526762246
Merged-chr9-107545797-3	chr9	107545699	107545899	+	835.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_018879)	TTS (NM_018879)	-1511.0	NM_053253	114602.0	Mm.28331	NM_053253	ENSMUSG00000010044	Zmynd10	Blu	zinc finger, MYND domain containing 10	protein-coding	3.40720056058661	4.02451488118067	3.11431951876246	2.94655395915752	3.79220966382118	4.07517622084749	3.8385362773996	4.03115820488575	1.4421920211161	0.0201946989273925	0.128906687736784
Merged-chr10-25366907-4	chr10	25366807	25367007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	7109.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	7.88859275397987	8.13861676257218	7.88251856705748	8.20341288043977	7.98379303230786	7.89401571485205	8.11573881945396	7.71113548011107	-0.139472976091127	0.439229862204128	0.727165989364937
Merged-chr13-74029209-4	chr13	74029119	74029319	+	781.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182839, intron 2 of 3)	intron (NM_182839, intron 2 of 3)	19800.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	4.15727305315001	4.31149537310847	4.34383287654975	4.57959162407155	4.31230807040813	4.55661030229158	4.23578140185033	4.25161927907223	-0.0751305187762945	0.849684340427999	0.943211766306273
Merged-chr7-140959349-3	chr7	140959252	140959452	+	794.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3391.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	3.64532548851089	3.46088771302375	3.42377989613929	3.52364576683497	3.54957446655287	3.8143875853139	3.52581571185572	3.64373265935154	0.377645667080088	0.433471835607935	0.723001565008487
Merged-chr15-100631675-4	chr15	100631586	100631786	+	887.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033872, intron 2 of 3)	intron (NM_001033872, intron 2 of 3)	3873.0	NM_001285414	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	3.58511449128706	3.55141087437637	3.63942079335251	3.78124016127051	3.84234410577065	3.3899734436291	3.90362055559267	3.40775438693635	0.050980808030023	0.920768627565508	0.970622554300086
Merged-chr12-37279047-4	chr12	37278954	37279154	+	927.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178767, intron 3 of 12)	intron (NM_178767, intron 3 of 12)	37415.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	4.79541710004085	4.12181188691071	4.83073676019138	5.06193998809858	4.78315331700387	4.56583717994845	4.66447378094744	4.38457243840829	-0.307076622359433	0.458158964963414	0.741119194927503
Merged-chr12-100006040-4	chr12	100005937	100006137	+	924.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	Charlie2b|DNA|hAT-Charlie	41538.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	4.77648880583769	4.53436164450205	4.91184462637378	4.49272105005139	4.79773612433073	4.67410560421686	4.64345003030932	4.6224967094652	0.0373187916213601	0.916189290740288	0.968918528564949
Merged-chr9-21022033-4	chr9	21021919	21022119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010493, intron 2 of 6)	intron (NM_010493, intron 2 of 6)	6079.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	4.96323924339651	4.99111992059278	4.27693273030343	3.85278315304617	4.99040457674903	4.9706425759786	4.90754675940475	4.22045416389443	0.407806528020275	0.398123771662568	0.696335068389275
Merged-chr10-30723191-4	chr10	30723098	30723298	+	789.983337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 2 of 14)	ID4|SINE|ID	-67331.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	4.20266677644435	3.73261333604949	3.76719820441631	3.97029597206515	3.83468365761541	3.99967379655233	4.18380298001773	4.2006098656199	0.338443440054042	0.449340191546486	0.734545622481451
Merged-chr13-58402393-7	chr13	58402289	58402489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301343)	promoter-TSS (NM_001301343)	123.0	NR_153504	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	7.05827698565701	7.34873394196235	7.43356642736282	6.87375286269773	6.94230091203721	7.69915711217335	6.98611779362892	7.3123884704648	0.101494314401238	0.679866322669197	0.86857902618052
Merged-chr10-75513375-4	chr10	75513279	75513479	+	947.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347201, intron 1 of 5)	intron (NM_001347201, intron 1 of 5)	4002.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	5.19134587450547	5.86160784522281	5.09108437920988	4.62500066792169	5.51248504303099	5.67937081406892	5.06601317921536	4.72734742542385	0.0494585089363396	0.906414711767362	0.965342382154129
Merged-chr19-18620022-4	chr19	18619900	18620100	+	769.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	11813.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	3.15757719124101	3.23625580996744	3.21459561272796	3.09572397128622	3.1305862906344	3.07953705183101	2.96264452742171	3.21284119890648	-0.286403675063001	0.608791539103644	0.830789949229438
Merged-chr11-100848218-4	chr11	100848077	100848277	+	952.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	2408.0	NM_001113563	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	4.84678146076953	4.75335366137299	4.3921292341979	4.65870501648973	5.05901174163263	4.91115168800293	4.59798035823836	4.73533993608805	0.35936207045971	0.310499527779035	0.622616866559057
Merged-chr14-50991313-4	chr14	50991227	50991427	+	818.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-16424.0	NM_001162863	75019.0	Mm.318775	NM_029145	ENSMUSG00000021872	Rnase10	4930474F22Rik|Rah1	ribonuclease, RNase A family, 10 (non-active)	protein-coding	3.60045538883573	3.78849105964286	3.4799412479469	3.65432255697947	3.93393485071844	4.11955822355627	3.69682602126749	3.65553566044393	0.666305940269516	0.159835085397478	0.447574709607265
Merged-chr7-101566848-4	chr7	101566754	101566954	+	816.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	-5989.0	NR_033804	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	4.13366370672759	4.50429198618282	3.89888016672137	3.48003943800606	4.03745093609701	3.96945680047602	3.66083586866075	3.84399516318109	-0.456289198474771	0.382205315367167	0.684281815592715
Merged-chr10-88802445-4	chr10	88802337	88802537	+	974.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175158, intron 18 of 61)	MIR|SINE|MIR	24377.0	NM_175158	70683.0	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	5.21078166385947	4.88811336121085	4.63197231014625	4.96392513115852	5.15896314017653	5.05633382840302	5.26936525102457	4.91483181181268	0.324940059479413	0.320922315023675	0.632680500237368
Merged-chr15-86204128-4	chr15	86204061	86204261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10298.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	6.84568585609637	6.69004179549714	7.33445632681379	7.23639560433422	6.68225989481522	6.98122421784294	7.15597474392158	7.22937748153295	-0.0491104782569091	0.837577819837397	0.938377719267248
Merged-chr17-71301510-4	chr17	71301416	71301616	+	956.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	9495.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	4.7763695698717	4.49597600096693	5.36252480107527	5.27245502168561	5.01251045149399	4.74500255927045	4.83003849032867	4.60724760280609	-0.433907059940804	0.262152234218562	0.574100843086496
Merged-chr7-100496487-2	chr7	100496387	100496587	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011671, intron 2 of 7)	intron (NM_011671, intron 2 of 7)	3129.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	3.44076878795853	2.94719260855717	3.2246691918125	3.30385531215016	2.89992197399746	3.21300641206328	3.269351809147	3.48793169502045	-0.0366798741081409	0.951226273423051	0.982613432096075
Merged-chr13-81402581-3	chr13	81402497	81402697	+	951.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 77 of 89)	L1MDa|LINE|L1	230547.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	3.90477409043373	3.51911673767915	3.95160032679532	4.28330296786706	3.72523388282855	3.57644115295581	3.57348099999134	3.90298798415447	-0.73351477472495	0.150517822280501	0.433192142653395
Merged-chr11-44526861-4	chr11	44526758	44526958	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 2 of 5)	intron (NM_001166553, intron 2 of 5)	7481.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	4.911112137064	5.39929180019187	4.87139274198816	4.07065222471477	5.99527256167233	5.80309269937612	5.35002795232137	4.90858899804691	1.22447713635538	0.00490482615114468	0.046888656790347
Merged-chr9-114743647-3	chr9	114743548	114743748	+	932.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026036, intron 3 of 3)	intron (NM_026036, intron 3 of 3)	12445.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	5.02489283608303	4.78124568733612	5.0258088781702	5.19971892789247	3.53138465904846	3.82703324336118	3.75503849105058	4.24379869952598	-3.02345650585886	2.97974657343231e-10	2.12520422194728e-08
Merged-chr13-6548140-4	chr13	6548054	6548254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145131)	promoter-TSS (NM_145131)	-3.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	9.14285179896789	9.33048620739826	9.44040306180278	9.50979051817874	9.2956640756682	9.11158323999494	9.6300809780365	8.91678170410241	-0.120279567692126	0.523523949900366	0.782507755382099
Merged-chr7-19506529-4	chr7	19506406	19506606	+	914.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177692, exon 2 of 2)	3' UTR (NM_177692, exon 2 of 2)	1825.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	4.27696095092822	4.29867869243167	4.13228887601461	4.61517904615093	4.21764045812287	4.40449138682467	4.57978913288507	4.52550442851613	0.163896652187516	0.684669849752314	0.870914954532591
Merged-chr11-86745758-4	chr11	86745654	86745854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	11813.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	5.43101724135127	5.12775497474175	5.60866610397723	5.64127405838575	5.15834013499796	5.26866825227973	5.10181155234037	4.97754820691789	-0.628153469698564	0.0408609676744402	0.204367281251642
Merged-chr9-116060833-4	chr9	116060761	116060961	+	840.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028638, intron 14 of 14)	intron (NM_028638, intron 14 of 14)	114502.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	4.39787016011502	3.97625541016842	4.23409382537336	3.90060853045144	4.63251145880547	3.8856426951328	4.25766340613621	4.04288508856227	0.289509970036558	0.528694464759901	0.785209349980073
Merged-chr13-95955673-4	chr13	95955574	95955774	+	983.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER63B|DNA|hAT-Blackjack	-63752.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	5.31268756211221	5.06734857193244	5.63747541283389	5.23605806675745	4.81132689177331	4.93197190622249	5.13714204633109	5.1265684586745	-0.602551483310517	0.0622725552234244	0.264063682435562
Merged-chr13-112386717-4	chr13	112386602	112386802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77368.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	5.32314824191392	5.20946745504746	5.06118968764287	5.07998587412624	5.72462916720221	5.55514036867207	5.32666890527765	5.12862971251974	0.535901268033826	0.0787947754140584	0.30375505411597
Merged-chr18-20736029-4	chr18	20735948	20736148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	10356.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	5.73714423763607	6.14095289165355	5.86713422905509	6.3750912099251	6.29819403102948	5.889616581811	6.10057855323921	6.16673495891228	0.0818775992914146	0.762041894667394	0.906776947564005
Merged-chr7-104446146-4	chr7	104446049	104446249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357467)	promoter-TSS (NM_001357467)	-24.0	NM_001357467	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	7.39596298886175	7.29358806898087	6.97767976791323	7.31150779024818	7.35326280841477	7.36499136251709	7.34115091017312	7.22762848291286	0.0877951917368402	0.638407618076973	0.847153284197798
Merged-chr11-8630028-4	chr11	8629943	8630143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	34492.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	6.07525115918559	5.90382393563988	6.29034552020842	6.33545489247553	6.28171955274584	5.86176809697632	6.14653819867958	6.24957593661961	-0.0291744213445661	0.907168160303603	0.965624681953793
Merged-chr14-121346732-4	chr14	121346619	121346819	+	905.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	32511.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	4.4979598167894	4.89274988215929	5.13500359807457	4.5684987939817	4.57652268661817	4.4920255590749	4.43447068773211	4.2584378150204	-0.745068249718432	0.056387054576221	0.248641689857566
Merged-chr8-46341007-4	chr8	46340854	46341054	+	905.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46283.0	NM_173789	234219.0	Mm.145631	NM_173789	ENSMUSG00000047171	Helt	A830086M02|Hesl|Heslike|Mgn|megane	helt bHLH transcription factor	protein-coding	4.05067341907727	4.08180090693026	4.34472516696833	4.52623162238291	4.57072676737617	4.12101453072795	4.13894370169412	4.92614735992858	0.483529465317491	0.283212916688879	0.59534411429271
Merged-chr12-105795093-3	chr12	105794990	105795190	+	767.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011112, intron 1 of 21)	intron (NM_011112, intron 1 of 21)	10393.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	3.86662994067455	3.66941604277519	3.56258607703063	3.92032293623291	3.97900742612668	3.49221377034463	3.36789084672898	3.61670711135937	-0.362821191825754	0.48825261641847	0.76118893988362
Merged-chr16-94312787-4	chr16	94312683	94312883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139145, intron 1 of 10)	intron (NM_139145, intron 1 of 10)	780.0	NM_139145	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	6.81620095532643	6.70090946866672	6.73272893677096	6.3911860560349	6.8548914966657	6.78702750037051	6.98313655987027	6.62141206595992	0.236353302338474	0.277682157378228	0.589710979467901
Merged-chr8-119827335-8	chr8	119827239	119827439	+	962.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	13240.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	3.52907231807693	3.29948484198784	3.3654118563109	3.1896561262512	3.49741414173361	3.59320141907543	3.29396642754061	3.52751470627278	0.490561088511154	0.340478731498056	0.649625680300759
Merged-chr9-108999281-4	chr9	108999195	108999395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 3 of 13)	intron (NR_153430, intron 3 of 13)	7393.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	5.95428623948734	5.94785176827572	6.06613473182165	6.25635523308762	6.15265870225838	6.10870902794427	6.39878613420708	6.04042529659675	0.161885921315277	0.505386499337068	0.771470037762552
Merged-chr9-104271884-4	chr9	104271765	104271965	+	941.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8935.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	4.67374161130558	4.92756246019633	5.16285755223048	5.52790440629225	5.0749677123867	4.85602004575223	5.31074425094515	5.22022955064602	-0.013842081069797	0.96961138464669	0.989034602712618
Merged-chr5-76974731-5	chr5	76974723	76974923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025691, exon 1 of 19)	exon (NM_025691, exon 1 of 19)	122.0	NM_025691	66661.0	Mm.296976	NM_025691	ENSMUSG00000036323	Srp72	5730576P14Rik|72kDa|AI132477|BC019196|C77589	signal recognition particle 72	protein-coding	5.71598742202647	5.96471277267553	6.50361042010279	5.76801578969046	5.90303965768524	6.11775874176034	5.99899832685257	6.18547823745166	0.0545259090739573	0.846600132013007	0.941967608044389
Merged-chr10-62311596-4	chr10	62311513	62311713	+	937.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 5 of 21)	intron (NM_010438, intron 5 of 21)	28808.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	4.82515318052775	4.39161351468983	4.99861409351825	5.19709366869591	4.64719068386321	4.5233584848367	5.17989820001746	4.92898726636991	-0.108197953986002	0.784184588557108	0.915967437099313
Merged-chr6-35538917-2	chr6	35538817	35539017	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008098, intron 1 of 3)	intron (NM_008098, intron 1 of 3)	971.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	3.11606710684346	3.06686734696562	3.2879350393719	3.07240296149735	3.11535902174504	3.34585206269074	3.22056291345607	3.05247033352399	0.200196730362558	0.717440179186946	0.887001463253648
Merged-chr9-37245718-4	chr9	37245597	37245797	+	931.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145960, intron 1 of 18)	intron (NM_001145960, intron 1 of 18)	10041.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	4.4099581171207	4.1888014615223	4.57852334664178	4.64843583139689	4.49656884873991	4.82481149620513	4.47681099777525	4.61421923680654	0.278020875023999	0.462777373269214	0.744239282691581
Merged-chr17-29009380-4	chr17	29009258	29009458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1363.0	NM_001357173	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	6.90156790872894	7.14662428232223	6.68783524250372	6.87254696823552	7.09115371174853	6.80133418865376	6.80044389953177	6.7734469959076	-0.0441204742376258	0.835020005345172	0.937170920808922
Merged-chr12-41350031-4	chr12	41349939	41350139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	136018.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	7.11425938552832	7.00166216239584	7.17285642089678	7.31517986721614	7.17947575488238	7.14323780981993	7.23358158802498	7.01308090287892	-0.0257321110784954	0.892249417647259	0.959628855154721
Merged-chr5-92398378-4	chr5	92398274	92398474	+	973.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181728, intron 2 of 7)	intron (NM_181728, intron 2 of 7)	10240.0	NM_001310665	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	4.6173726176625	4.92788850990721	4.85272386436176	4.74314098946282	5.03842897183449	4.83567826028486	4.96366419616918	4.57163603963289	0.171167852314037	0.615595013520349	0.834522482523234
Merged-chr16-58480449-3	chr16	58480265	58480465	+	791.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	43061.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	2.89666220330808	2.80351503451168	2.89701520331178	2.85687492916288	3.05565759227141	2.87503461753065	2.69547144849189	2.95439735738243	0.199626647846865	0.744198146846899	0.89923574268619
Merged-chr10-94098289-3	chr10	94098169	94098369	+	827.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 5 of 20)	intron (NM_053072, intron 5 of 20)	-49662.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	3.43664169965188	3.47454788968619	3.37203820509764	2.78271430114984	3.96776120338945	3.73863248650425	3.93811477109712	4.11528439681271	2.14081041803454	0.000181673147106662	0.00335582981897626
Merged-chr8-72365970-3	chr8	72365846	72366046	+	781.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007944, intron 21 of 23)	X3_LINE|LINE|RTE-BovB	46884.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	3.36543610112234	3.24001473790516	3.19440833176766	3.17719191346801	3.18736128687271	3.03342856133327	3.59159510760577	3.30942318324234	0.197283233246225	0.722801767609115	0.88928524667289
Merged-chr19-34231751-3	chr19	34231626	34231826	+	727.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360720)	promoter-TSS (NM_001360720)	-899.0	NM_001360720	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	3.75344168813167	3.3698682448267	3.42217930829668	4.07081673659733	3.8549224841231	3.65832898270203	3.63794213820294	3.48193126946087	-0.0968416242729908	0.858793927191872	0.946576014812915
Merged-chr9-65541858-4	chr9	65541760	65541960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38227.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	7.49780758452699	7.76588042510738	7.42009799615117	7.28729764004298	7.74829171121858	7.93483899648274	7.92664618339738	7.8350156832279	0.475034272603294	0.0102561074946735	0.0804163334835169
Merged-chr12-72085668-4	chr12	72085565	72085765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205067)	promoter-TSS (NM_001205067)	-174.0	NM_001205067	104771.0	Mm.258935	NM_024205	ENSMUSG00000005078	Jkamp	1200003C05Rik|2310047L11Rik|Jamp	JNK1/MAPK8-associated membrane protein	protein-coding	9.48897581909594	9.60810409373552	9.64005845129687	9.49593020268648	9.43320864134747	9.61594834202364	9.66786756612061	9.44567795904615	-0.0192182585660142	0.89108382427063	0.959258016639054
Merged-chr5-30651633-4	chr5	30651530	30651730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175675, intron 1 of 5)	intron (NM_175675, intron 1 of 5)	3691.0	NM_175675	74919.0	Mm.247985	NM_175675	ENSMUSG00000029175	Slc35f6	4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9	solute carrier family 35, member F6	protein-coding	6.50257275548192	6.45791364385689	7.01406337027342	6.93218939729776	6.54173024469615	6.55618803428831	6.24879394086675	6.62832255240252	-0.367733714606745	0.124912956743761	0.392252144000713
Merged-chr13-21783395-4	chr13	21783293	21783493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178207)	promoter-TSS (NM_178207)	4.0	NM_178207	319153.0	Mm.390558	NM_178207	ENSMUSG00000101972	Hist1h3i	H3-H	histone cluster 1, H3i	protein-coding	7.08542670173113	7.04988019188529	6.8084052591031	6.67914359225625	7.27290042305969	7.33260840782197	7.26779836627309	7.19515274077705	0.49954589192218	0.0115010121795933	0.0871161589795966
Merged-chr14-52133814-4	chr14	52133706	52133906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023879, exon 10 of 25)	exon (NM_023879, exon 10 of 25)	22903.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	6.16474052384593	6.27210267763585	5.99599888347167	6.44495592254686	6.16820325298836	6.23842188004646	6.17318944078651	5.84769709525009	-0.198253656372956	0.421382749310708	0.713997398428558
Merged-chr8-75089736-4	chr8	75089637	75089837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3881.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	7.26403906498867	7.32140158228882	7.17726427935209	7.23053119264734	7.26173933169198	7.38784993105815	7.2706644639076	7.04020489827965	-0.0050038324674864	0.978193524212636	0.992253549176538
Merged-chr2-164075239-4	chr2	164075143	164075343	+	968.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021420, intron 1 of 10)	intron (NM_021420, intron 1 of 10)	1065.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	5.01813527620318	5.19721082188144	5.15010065832635	5.07691814201343	5.04797348849944	5.01036059138541	5.18506784786437	4.86963486053573	-0.14634298992917	0.63252432821299	0.843973166742038
Merged-chr7-114347170-4	chr7	114347065	114347265	+	884.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029437, intron 1 of 3)	intron (NR_029437, intron 1 of 3)	67996.0	NR_029437	71045.0	Mm.235682	NR_029437	ENSMUSG00000087475	4933406I18Rik	4933403D24Rik	RIKEN cDNA 4933406I18 gene	ncRNA	4.57473746195227	4.37498868977995	4.4589007820137	4.87568174421001	4.24707298704243	3.90441168668471	4.26603238039745	4.45602408984351	-0.855007398218594	0.0397790020418452	0.201053013302315
Merged-chr19-16029541-7	chr19	16029444	16029644	+	955.839294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44469.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	3.8545784727577	3.70412707436552	4.29204808980359	3.39517786825314	3.76559338573624	4.12824239733377	3.73173987574718	4.13211329550936	0.291558252347551	0.571659125582601	0.810781529929199
Merged-chr10-83638942-2	chr10	83638842	83639042	+	832.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145220, intron 2 of 20)	ORR1F|LTR|ERVL-MaLR	9722.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	2.95981467111833	2.79571855878289	2.9048414046402	2.64605623427382	2.50919447625676	2.61582763496064	2.64748898625847	2.84535095800106	-0.83554136715493	0.215507052692857	0.521712540836435
Merged-chr11-46795817-4	chr11	46795707	46795907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14992.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	6.64410425312062	6.85870418948366	6.57120448092017	6.53353518935956	6.31366750190676	6.03104186475427	6.20938809914582	5.84579823452518	-0.791356978094293	0.000904454563582504	0.01243542039429
Merged-chr11-3998128-4	chr11	3998023	3998223	+	811.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001177703, exon 3 of 3)	exon (NM_001177703, exon 3 of 3)	8190.0	NM_001177691	53897.0	Mm.103414	NM_016922	ENSMUSG00000049721	Gal3st1	Cst|Gcst	galactose-3-O-sulfotransferase 1	protein-coding	4.07169365021131	4.00254170097234	4.53319941335231	4.50326259512347	3.96222428057427	4.09095108372101	4.2831247772114	4.21284158544178	-0.426427887593827	0.322754213381926	0.634236711233839
Merged-chr12-40223978-4	chr12	40223879	40224079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013562)	promoter-TSS (NM_013562)	615.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	5.7574372582164	6.07889813319315	5.37051475562004	5.55552270342855	5.7612182454412	5.34286695370207	5.84243751917615	5.73026993607096	-0.0461800237256149	0.876958320761084	0.953880962628604
Merged-chr13-64432791-1	chr13	64432691	64432891	+	1000.0	f0_c57.idr	intron (NM_053180, intron 1 of 7)	CpG	238.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	6.78064962812407	6.66908264309492	6.76798946301153	6.56670139282301	6.50514242390019	6.61169613425947	6.86491030221998	6.56749541764331	-0.0707368232349677	0.737878384949174	0.896555867875472
Merged-chr14-79552984-3	chr14	79552881	79553081	+	857.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	L1_Mur2|LINE|L1	-34679.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	4.16519719029411	4.11319892817218	3.6973673782575	3.28548447066745	3.63172212288825	3.92842248837175	3.78954943112859	3.80340474101157	-0.197450866036183	0.710474586872609	0.884137043585535
Merged-chr1-172027387-4	chr1	172027273	172027473	+	906.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033509)	promoter-TSS (NM_033509)	-78.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	4.78171794571042	5.07287881878605	4.8179244709014	4.8014509641171	4.53524580086717	4.63462767067865	4.29262702559754	4.58597846321886	-0.764272192334304	0.0314093506827252	0.172609573873879
Merged-chr3-9947885-4	chr3	9947783	9947983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64702.0	NM_001272097	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	5.70231175037278	5.5449355300881	5.37209685883918	5.74680846269121	5.75515224493747	5.54905096731047	5.67441662635336	5.51684360646091	0.0378591600627907	0.889127707049489	0.958460693333562
Merged-chr9-61024917-4	chr9	61024810	61025010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7841.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	5.35186632785214	5.33190620533456	5.49264324428374	5.33877298879525	5.18866455072649	5.49712486625076	5.54142784016886	5.15821918450654	-0.0466912789417655	0.871905245186266	0.95183223179801
Merged-chr12-3297806-4	chr12	3297666	3297866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	B1_Mm|SINE|Alu	12203.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	6.52222291449511	6.83857520784429	6.96439721127054	5.96557584113313	6.77059410018825	6.87467858808776	6.97592911215856	6.46656089578763	0.241647948716252	0.386666021399272	0.687770216087633
Merged-chr7-19221573-3	chr7	19221446	19221646	+	935.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175668, exon 2 of 2)	5' UTR (NM_175668, exon 2 of 2)	-6843.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	4.24730998629769	4.34765339119363	3.64648359997031	3.50558114051203	3.88714134582594	3.76735524510817	3.44602037257933	3.64452174006543	-0.815469842144008	0.136409490170834	0.41091739052877
Merged-chr13-80968698-3	chr13	80968613	80968813	+	663.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	RLTR16|LTR|ERVK	4639.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	3.56027187753363	3.33214012065108	3.6626507527244	3.80031977093089	3.334471811196	3.44246412465866	3.37899069909326	3.70839592594109	-0.452785108156762	0.387576603080599	0.688440782422787
Merged-chr4-109118065-4	chr4	109117950	109118150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134791)	promoter-TSS (NM_001134791)	-14.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	7.43109184508278	7.43605903975416	7.1619816001849	7.04639738112086	7.4232526007302	7.31576408200798	7.26804285813993	7.09757579671065	0.0198678588910986	0.920599405067217	0.970534411124792
Merged-chr3-27984585-4	chr3	27984502	27984702	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	431.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	5.11235698926837	5.033443391686	5.27502920484939	5.80788108637102	5.3652619516082	4.98514648919472	5.12217510079077	5.38730834459668	-0.249117467989946	0.474221790388895	0.751607118426792
Merged-chr15-89374055-4	chr15	89373923	89374123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111288)	promoter-TSS (NM_001111288)	-205.0	NM_001111288	100126824.0	Mm.287977	NM_001111288	ENSMUSG00000091780	Sco2	-	SCO2 cytochrome c oxidase assembly protein	protein-coding	5.89413015627932	5.72046929874266	5.98348730230352	5.80380118325095	5.95612949508171	5.8205968777988	5.79504235695662	6.22932635462958	0.184724317607748	0.466030287777365	0.746267038328572
Merged-chr1-170912449-4	chr1	170912340	170912540	+	978.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029984, intron 2 of 5)	intron (NM_001029984, intron 2 of 5)	501.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	4.79857251310836	4.93359768515019	4.49092976317191	4.37010003717669	4.16213195104914	4.74921702498976	4.63238595955822	4.61245408812682	-0.246254909338829	0.538569607708913	0.791666974563585
Merged-chr3-15428103-4	chr3	15427982	15428182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1655.0	NM_001002898	320832.0	Mm.330924	NM_178792	ENSMUSG00000095788	Sirpb1a	9930027N05Rik|SIRP-beta|Sirpb|Sirpb1	signal-regulatory protein beta 1A	protein-coding	6.09208346316727	6.40427240747763	6.21567530123032	6.32155096239419	6.23043412781435	6.31116913086476	6.22211708838933	6.1716808791522	-0.0574008875180943	0.798230166992592	0.921955533143952
Merged-chr9-104581762-3	chr9	104581656	104581856	+	855.783325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	12273.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	4.20412156869577	3.67912386507644	4.35866718254861	4.7436023564669	3.27737614379945	3.64443902055057	3.69856868213975	3.71113673213681	-2.0941750735232	0.000147224324886166	0.00280795289953709
Merged-chr7-114415932-6	chr7	114415882	114416082	+	834.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029437)	promoter-TSS (NR_029437)	728.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	3.2859301426454	3.60563052963413	3.596300197293	3.66071239471602	3.8081357839744	3.71349508775512	3.58233744789289	3.97350073851242	0.682277016151413	0.166737838163906	0.45810154395954
Merged-chr14-77790965-1	chr14	77790865	77791065	+	845.0	f0_balb.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	8003.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	3.52763741434461	3.47888785318472	4.00188092520118	3.86433302047631	3.21399241466811	3.06045633376538	2.94101274388193	3.16832945478558	-2.3985188275935	0.000150310841111294	0.00285763230754829
Merged-chr6-84058792-3	chr6	84058696	84058896	+	893.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 4 of 54)	intron (NM_001077694, intron 4 of 54)	39410.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	3.65615065902326	3.31377738573265	3.81253571429071	4.20405557977484	3.81542444963946	3.77476512093986	3.52860852537762	3.81027032627191	-0.18410637206138	0.73444912478992	0.895054085885471
Merged-chr8-11253720-3	chr8	11253632	11253832	+	871.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009931, intron 2 of 51)	intron (NM_009931, intron 2 of 51)	-59073.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	3.62116724380253	3.63000584879212	3.77920629436281	3.44499373616524	3.59507170771648	3.62235385988479	4.1027357761514	3.72661238492481	0.491452404020784	0.312787402250448	0.624670870760772
Merged-chr2-35506833-4	chr2	35506730	35506930	+	964.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45381.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	5.01470038513952	4.58701572208021	5.01554510549518	5.64680498505095	4.89515474561661	4.80345723140008	4.99110655100267	5.01212864793612	-0.421775984241867	0.2729036013115	0.584364672732811
Merged-chr11-61843647-3	chr11	61843536	61843736	+	822.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013881, intron 3 of 26)	intron (NM_013881, intron 3 of 26)	11456.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	3.41733783640071	3.48730396759681	3.52727189110043	3.60684071151348	3.59483424657968	3.34465296894126	3.4052424544726	3.47182985086025	-0.179678697598532	0.720419618802195	0.888266695191696
Merged-chr11-29823383-4	chr11	29823307	29823507	+	841.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_176829, exon 1 of 1)	3' UTR (NM_176829, exon 1 of 1)	2261.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	3.76669637817928	3.5314525558827	3.81688068995711	4.0154625148839	3.66106584345298	3.46805517483015	3.84792645376368	3.8623177037034	-0.254445820551512	0.604171278504771	0.828391875497295
Merged-chr4-83303667-4	chr4	83303549	83303749	+	923.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	intron (NM_027238, intron 1 of 19)	20540.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	4.55098936938791	4.79958781517491	4.71856504995797	4.82258605998367	5.10348994483439	4.49164210135443	5.14743660319929	4.59255054806739	0.294708336869089	0.425527474772951	0.716992238586874
Merged-chr13-92581168-2	chr13	92581068	92581268	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4936.0	NM_030237	79401.0	Mm.23520	NM_030237	ENSMUSG00000046957	Spz1	1700027M20Rik|AI429130	spermatogenic leucine zipper 1	protein-coding	3.48986331444152	3.46763303011092	3.6021666626145	3.72529738195297	3.43520398226024	3.48347392087105	3.3566617532679	4.11886186056302	0.172763043773602	0.74920046326032	0.901219204917164
Merged-chr10-82863453-4	chr10	82863349	82863549	+	690.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042513, intron 2 of 14)	intron (NM_001042513, intron 2 of 14)	3108.0	NM_001042514	50493.0	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	3.20159569316388	3.55228305274173	3.74486265075813	3.52862778640717	3.59308967793323	3.76079414072432	3.910344420951	3.83768771903002	0.785761296216998	0.116539252818181	0.37767267801734
Merged-chr6-51466338-3	chr6	51466241	51466441	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_182650, exon 5 of 10)	exon (NM_182650, exon 5 of 10)	3553.0	NR_104468	53379.0	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	3.30626822673904	3.13604145476041	3.25243712825009	3.15258583119343	3.46257383122955	3.11772884452744	2.86127651898364	3.19406185269899	-0.0906935000249178	0.878429317627739	0.954545606389742
Merged-chr2-129186355-4	chr2	129186217	129186417	+	775.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5644.0	NR_045264	100048701.0	Mm.428544	NR_045264	ENSMUSG00000084826	AI847159	-	expressed sequence AI847159	ncRNA	3.57335112972733	3.98129486106025	3.57381997567684	3.45132372876905	3.66143095148212	3.8592089694253	3.43955273068683	4.09305734475442	0.373847520819439	0.467812555053497	0.747154393523299
Merged-chr1-9945345-4	chr1	9945252	9945452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1234.0	NR_024067	73824.0	Mm.28311	NR_024067	ENSMUSG00000098234	Snhg6	1110008H02Rik	small nucleolar RNA host gene 6	ncRNA	6.13408879059534	6.17632008167991	6.00160555103056	6.6436323062339	6.34180965607849	6.31200915739587	6.40179837112058	6.43013404963616	0.123495966969372	0.62565220426915	0.840029015876445
Merged-chr13-41788251-3	chr13	41788144	41788344	+	775.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145875, intron 4 of 6)	intron (NM_001145875, intron 4 of 6)	59244.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	3.63804632831295	3.93171481307651	3.3608154070074	3.16240320683111	3.55086133778543	3.75833341048103	3.28621943296234	3.22975275769268	-0.264244441453394	0.65015721092625	0.853073663849719
Merged-chr8-117498454-6	chr8	117498401	117498601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 1 of 32)	CpG	226.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	5.25946306302485	5.0728698674424	5.28971425986194	5.29110827673172	5.00720080968381	5.37248614297958	4.86011384578289	5.19595119489471	-0.220993217242605	0.475917501506516	0.752603574391689
Merged-chr5-143509961-3	chr5	143509875	143510075	+	884.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347530, intron 3 of 6)	intron (NM_001347530, intron 3 of 6)	18018.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	3.27308515663514	3.33619083789255	3.38021153760556	3.4004847271199	2.89861348401584	2.99599936804603	3.14598549200452	3.27173844955523	-1.06999903211667	0.0632474305682594	0.266889308775085
Merged-chr8-105172197-4	chr8	105172077	105172277	+	895.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161456, intron 2 of 4)	intron (NM_001161456, intron 2 of 4)	1503.0	NM_001161458	12400.0	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	5.19036427402835	4.83076860459325	5.52645104167035	5.63374433054995	5.22027919915178	5.00445286193236	4.95951322276928	5.36624758919456	-0.354216424470643	0.306022716754407	0.61851920821938
Merged-chr8-22498128-3	chr8	22498038	22498238	+	980.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011394, intron 1 of 10)	intron (NM_011394, intron 1 of 10)	-21259.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	3.16911814805397	2.92913772792396	3.09125471713792	2.89005083697478	4.49208039341855	4.09658752975432	3.55229127312503	4.04607343887758	3.66344179265069	8.64758007873727e-10	5.61099455263847e-08
Merged-chr8-117303778-4	chr8	117303683	117303883	+	985.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-45387.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.98425839596196	5.07068637198129	4.58131320784019	5.09595915165724	4.91676968808811	4.93558866672556	5.23760456263874	5.20355486243576	0.224349768637656	0.502788372622333	0.769945404189203
Merged-chr11-74832297-4	chr11	74832198	74832398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 1 of 5)	CpG-2219	1374.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	8.92443071446422	9.23858921064122	8.8610299396381	8.74128690883513	8.83501412316915	8.90253495019734	8.97529727598793	8.96758258566804	-0.0403706043887599	0.806687728548112	0.925483423510202
Merged-chr16-36985810-4	chr16	36985717	36985917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358217, intron 1 of 3)	ORR1D1|LTR|ERVL-MaLR	4650.0	NM_001358217	207215.0	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	7.60547463447203	7.71927291247002	7.66517680654533	7.45603909390218	7.52964395928878	7.38548239126589	7.3047975010843	7.57566292999936	-0.201506989127116	0.261063922848464	0.572963652746366
Merged-chr12-21508680-1	chr12	21508580	21508780	+	629.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-91244.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	2.78341037134627	2.98140619146388	2.83982913507309	2.92931553507272	2.25229958116433	2.32465411378182	2.30132772872283	2.3051411367364	-5.04907331681134	8.98933742004144e-06	0.00025033335219919
Merged-chr11-96963768-4	chr11	96963671	96963871	+	791.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003293, exon 6 of 6)	non-coding (NR_003293, exon 6 of 6)	13917.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	4.17335919806276	4.06685793873729	3.61597383623276	3.71833717334083	3.9151032535718	4.16846284275889	4.02614116988819	3.84518891272971	0.233240304683978	0.612864535225035	0.832898992893228
Merged-chr12-10068224-3	chr12	10068126	10068326	+	941.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-301745.0	NM_027588	70881.0	Mm.272843	NM_027588	ENSMUSG00000020622	Nt5c1b	4921514H13Rik|AIRP|CN-IB|cN1B	5'-nucleotidase, cytosolic IB	protein-coding	3.8249718795459	3.74659943451139	3.91408500084056	3.92475916415341	3.16412853091128	3.37387826651374	3.50243938437231	3.51383305548894	-1.58041383872684	0.00234378181485403	0.0264295912196703
Merged-chr10-8879499-2	chr10	8879375	8879575	+	870.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	6595.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.31409919611274	3.79508539303046	3.37224085642635	2.99016871360084	3.55557409163233	3.30436968321255	3.0461743793164	3.3703775537454	-0.224502485140278	0.71243220328347	0.884871428029492
Merged-chr10-20788977-1	chr10	20788877	20789077	+	779.5	f0_balb.idr	Intergenic	RLTR45|LTR|ERVK	-63899.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	3.62306092257185	3.39041994110984	3.47327148285534	3.76917695673703	3.2540752494623	3.4759950438842	3.16575121618817	3.10594785985169	-1.15551255918393	0.0366378419282871	0.190534445138712
Merged-chr18-65466315-4	chr18	65466230	65466430	+	947.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172833, intron 12 of 15)	intron (NM_172833, intron 12 of 15)	35333.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	5.02080350099316	4.79694554516829	4.87914794601196	5.22220335688367	5.27858718255157	4.85471376375582	5.2117120615343	4.79838065228027	0.113634951471649	0.739258374461672	0.897216910233871
Merged-chr11-86634591-4	chr11	86634471	86634671	+	888.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 7 of 11)	intron (NM_001356531, intron 7 of 11)	36704.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	4.65925886815203	4.15196543325538	4.69647062669347	4.61345350734525	4.75807246148182	4.50018708875657	4.35151039952244	4.58081838934001	0.0362790068652682	0.925068356557824	0.972377995573636
Merged-chr3-80958818-3	chr3	80958713	80958913	+	818.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45153.0	NM_001345955	14658.0	Mm.275639	NM_010298	ENSMUSG00000028020	Glrb	AI853901|Glyrb|spa|spastic	glycine receptor, beta subunit	protein-coding	3.91827279842538	3.53440047731853	3.91885844482713	3.95309802841995	4.1103059860323	3.59211432516087	3.75489053434787	3.81934917889214	-0.00303039421561622	0.99500332232077	0.998190746524986
Merged-chr2-79253935-2	chr2	79253835	79254035	+	846.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1491.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	3.59395526406392	3.73642037906639	3.5423931183215	3.28674828814826	3.58413039614587	3.42348232144557	3.41867728303247	3.42966081588615	-0.233595567775686	0.651320053550556	0.853894409112639
Merged-chr10-60362337-4	chr10	60362229	60362429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 3 of 6)	intron (NM_028732, intron 3 of 6)	15478.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	6.06206056003864	5.59134410986076	7.02594880734727	7.0708710763272	5.92309564696181	5.52993394756104	6.15786738736538	6.48812929233377	-0.760634896608187	0.200481414137101	0.502537912975936
Merged-chr7-101379120-6	chr7	101379017	101379217	+	899.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	995.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	4.02627505764296	3.9849255636866	3.57415543251221	3.64077250828877	4.21606912776971	4.59991660830985	3.85839517822961	3.97559344678671	0.997917993430936	0.0358041926855349	0.187974822719522
Merged-chr10-26564633-3	chr10	26564529	26564729	+	762.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110022.0	NR_033633	667572.0	Mm.482728	NR_033633	ENSMUSG00000098179	Gm8709	EG667572	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	3.27363350353995	3.2331876546245	3.6836674933809	3.09134397438976	3.83936218273188	3.75278022491744	3.80851188443615	3.73068091257677	1.50744095939209	0.0034084316179819	0.0352936796823296
Merged-chr11-69121108-2	chr11	69121008	69121208	+	727.041626	f1_balb.idr|f1_c57bl6.idr	intron (NM_033041, intron 1 of 3)	intron (NM_033041, intron 1 of 3)	655.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	2.4918669013692	2.2951258242499	2.35464221249364	2.40528732086768	2.37562087522808	2.6617909337696	2.54628440078219	2.5545361006532	0.798065380458281	0.251507227052324	0.56287087730158
Merged-chr5-145140941-4	chr5	145140827	145141027	+	832.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033313)	promoter-TSS (NM_001033313)	490.0	NM_001310770	231889.0	Mm.277413	NM_001008705	ENSMUSG00000038722	Bud31	C77604|EDG-2|EDG2|G10	BUD31 homolog	protein-coding	3.42368713092768	3.69738790700923	3.42409358742797	3.44953687163115	3.84093388835475	3.88200541557056	3.53289383052091	4.06471871640533	1.03499988281622	0.0332644593230965	0.179203181261166
Merged-chr18-80280586-4	chr18	80280499	80280699	+	798.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025861, intron 4 of 5)	intron (NM_025861, intron 4 of 5)	24293.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	3.65230073167545	3.78461673563897	3.85843362436552	3.31933006150223	3.88551833885303	3.88012616941211	3.79370094177778	3.70524338223232	0.49373156967628	0.310208602174264	0.622367047019616
Merged-chr5-129584027-4	chr5	129583937	129584137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011846)	promoter-TSS (NM_011846)	-132.0	NM_011846	23948.0	Mm.42047	NM_011846	ENSMUSG00000029436	Mmp17	MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding	5.95753989529991	6.29525626312958	6.71709951003694	6.14730243781494	5.68979224977101	6.20499426126765	6.08285290420615	6.42292083118545	-0.284394567718585	0.322498993257266	0.633993567259619
Merged-chr5-67297222-4	chr5	67297104	67297304	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9751.0	NM_178651	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	5.1710143322493	5.23875565361033	5.13828440753473	5.5846613552243	5.44978045758037	5.01364042751324	5.56383863429922	5.32475584950451	0.0762469032339024	0.810112213708347	0.926776956547369
Merged-chr11-20742471-4	chr11	20742376	20742576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290545)	promoter-TSS (NM_001290545)	-920.0	NM_181411	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	5.4188427750586	5.2498552984969	5.32806665085998	5.76099232960243	5.639537806708	5.22751794608853	5.72528305819431	5.72775662990417	0.212200438848872	0.485738088415643	0.759541990231482
Merged-chr16-11008404-4	chr16	11008297	11008497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040518)	promoter-TSS (NR_040518)	-501.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	7.59551889392293	7.40160308251414	8.01503870800649	7.38527862840635	7.6766049660677	7.36636344912915	7.76716493945599	7.5381860085613	-0.024284615947748	0.909191544852761	0.966244025263977
Merged-chr1-182937853-4	chr1	182937747	182937947	+	914.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16941.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	4.37291557277271	4.7747981030845	4.78255723179876	4.40494038920482	4.14245845871449	4.54755134006219	4.21653454961099	3.90297470016006	-0.886839127374159	0.0355209083483923	0.187062942832955
Merged-chr17-56476106-1	chr17	56476006	56476206	+	941.0	f0_c57.idr	intron (NM_001252455, intron 1 of 27)	CpG	374.0	NM_001252455	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	3.8250210712798	3.89752106754418	3.59501324027725	3.86598898708637	4.08171459538928	4.19021941905356	3.7012207965217	4.10660728580226	0.621581096485603	0.169631050143736	0.462321889663741
Merged-chr4-149696889-4	chr4	149696776	149696976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 1 of 23)	intron (NM_001029837, intron 1 of 23)	1832.0	NM_001164050	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	5.82834193486237	6.01411644229058	5.87776761047676	6.01485050944024	6.44776467590219	5.47049318376184	5.87119248107517	6.27622730705916	0.224706801041431	0.445866223600623	0.73171921081227
Merged-chr16-31124481-3	chr16	31124370	31124570	+	735.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030138, intron 10 of 22)	intron (NM_030138, intron 10 of 22)	-43038.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	3.32900173945194	3.19963599512037	3.42835416869289	3.1070399404476	3.00251303839488	3.08571171741824	3.03212960760609	2.97511046638156	-0.977510890673715	0.0922726372644494	0.332264584805294
Merged-chr5-136664731-2	chr5	136664631	136664831	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28415.0	NM_001303019	59310.0	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	3.31654741786166	3.6171303344979	3.25335872450823	3.06078872426842	3.33167293198293	3.71556702435359	3.36481478256392	3.77996334227678	0.798507328410462	0.148066106948293	0.429610200002956
Merged-chr6-15764326-4	chr6	15764237	15764437	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	43676.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	4.12186741022649	4.37648817088921	4.41211691080165	4.46201003235254	4.80778186836406	4.35361651897217	4.5901440971661	4.53285037322676	0.525928441939311	0.167456420737395	0.459121129537113
Merged-chr10-84556360-4	chr10	84556255	84556455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3017.0	NR_040658	442847.0	Mm.128292	NR_040658	ENSMUSG00000097076	Platr7	C330046G13Rik	pluripotency associated transcript 7	ncRNA	6.3070145351588	6.03885879247631	5.90082775938027	5.8177853678743	5.77721549451133	6.1849202652027	5.61967287368214	5.67174336138621	-0.305794109068288	0.267619651885431	0.579310844886353
Merged-chr12-79627549-4	chr12	79627464	79627664	+	914.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	297169.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	4.68013891667584	4.75463990790414	4.33471119334144	4.66445949352451	4.65238711843094	4.56069590508716	4.73189078272408	4.75140420928855	0.111721947258742	0.751176299377343	0.902050378109251
Merged-chr17-34604761-2	chr17	34604667	34604867	+	926.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-1094.0	NM_001163379	55979.0	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	4.9582113949523	4.98864262982834	4.73683166958338	4.46449023502268	5.12990709195913	4.87301904544743	4.71474650295853	5.22912229840317	0.437839290938615	0.219449590992713	0.526993886166704
Merged-chr11-82045527-4	chr11	82045445	82045645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013654)	promoter-TSS (NM_013654)	-167.0	NM_013654	20306.0	Mm.341574	NM_013654	ENSMUSG00000035373	Ccl7	MCP-3|Scya7|fic|marc|mcp3	chemokine (C-C motif) ligand 7	protein-coding	5.44379910198733	5.76514897788342	5.80791021581498	5.65649888898719	5.73232012352986	5.4968712974216	5.63621433356267	5.52791958546896	-0.111220690888797	0.677135427166347	0.867444568692716
Merged-chr11-26587756-4	chr11	26587660	26587860	+	978.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	6160.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	4.51886214544256	5.24432823257816	5.16762725588083	5.47513047205195	5.02455782955384	5.07745915550381	4.87877098204384	4.46675432794697	-0.529841502935596	0.174462925908473	0.468918013274924
Merged-chr14-77923679-4	chr14	77923568	77923768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 1 of 11)	intron (NM_029495, intron 1 of 11)	19429.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	6.07123001813869	5.6260278702838	5.85859085721571	5.98341492916124	5.77246441898625	5.93750172327263	5.80544288426549	5.87748900236045	-0.0863550286709672	0.734019421776433	0.894723473099637
Merged-chr4-115825450-4	chr4	115825342	115825542	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-2650.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	5.11338465762564	5.11673439566496	4.87372344359853	4.82667585455757	4.76315643284684	5.04914411965427	5.26256141189482	4.97904955429255	0.0726122500594423	0.825792308871706	0.933172369962049
Merged-chr12-70107113-4	chr12	70106994	70107194	+	883.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286079, intron 1 of 28)	MIRb|SINE|MIR	-4240.0	NM_001081453	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	4.75853758069004	4.88965348937243	4.52279436690882	4.9815472736497	4.24804530407373	4.78016938638105	4.62479494783049	4.38340126693527	-0.643876266360085	0.088522980983009	0.324658762540684
Merged-chr7-127717196-4	chr7	127717068	127717268	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001301283, exon 3 of 3)	exon (NM_001301283, exon 3 of 3)	4231.0	NM_001301283	13019.0	Mm.389954	NM_007795	ENSMUSG00000042340	Ctf1	CT-1	cardiotrophin 1	protein-coding	5.04585334055683	5.42512604552235	4.70956803800819	5.11997087684572	5.14976352580989	5.04570800429378	4.72974384332634	4.70656358548595	-0.339061600276472	0.338872510170318	0.648184761990371
Merged-chr19-53800226-3	chr19	53800119	53800319	+	778.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	-92012.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	3.11513471787028	3.37920444123177	3.32567446280142	3.19792753655431	3.82482169453587	3.62675113459357	3.83672364869702	3.93615516388552	1.81476004862297	0.00027394929935578	0.00471342450540128
Merged-chr1-39527646-4	chr1	39527542	39527742	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8059.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	4.88585928283157	4.67138145680395	4.85052238753041	5.00104201746201	4.96170240955851	4.74299623583931	4.86333118513069	5.08069148353911	0.107314638854443	0.744945425817094	0.899421081932268
Merged-chr4-127235995-4	chr4	127235932	127236132	+	957.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198618, intron 11 of 11)	CpG	-7752.0	NM_030252	80284.0	Mm.139607	NM_030252	ENSMUSG00000042380	Smim12	BC003266	small integral membrane protein 12	protein-coding	4.72978051705936	4.65618044595833	4.80423418490373	4.67713483713663	4.6579580146251	4.65749056757609	5.00758624014345	4.64933386913238	0.0774454479935753	0.820474353955938	0.931220206656085
Merged-chr1-89078903-4	chr1	89078821	89079021	+	932.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133816, intron 1 of 5)	intron (NM_133816, intron 1 of 5)	8506.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	4.76769275456624	5.33320808411059	5.10009293625844	4.33361230335721	5.696481895171	4.98937958833954	4.86514437869473	5.15985556199189	0.55812541246545	0.171780585561551	0.465089336091783
Merged-chr3-94841629-1	chr3	94841529	94841729	+	542.0	f0_balb.idr	intron (NM_001165948, intron 1 of 18)	intron (NM_001165948, intron 1 of 18)	4062.0	NM_172683	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	2.97015055094396	2.87312324756181	3.08775904622967	2.97160008534354	3.04208563271428	2.72691659004972	2.76462449818898	3.33821759593747	0.0727600654770757	0.909510090063516	0.966320459266825
Merged-chr2-13557503-8	chr2	13557402	13557602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12838.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	4.92854503655332	5.26436502261285	5.54766521279753	5.27155119846368	5.19461334924421	5.25564087252768	5.2794400799949	5.35998025460933	-0.000839034813757552	0.997791777534372	0.999049532170228
Merged-chr4-58503227-4	chr4	58503119	58503319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172989, intron 2 of 3)	ORR1D2|LTR|ERVL-MaLR	-3816.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	5.69473512178521	5.88686000853691	5.69573748169165	5.16258421284128	6.59536500379782	6.24267843367071	5.86496296869059	6.06331528405072	0.965283739332845	0.00136774823676164	0.0173445486806444
Merged-chr4-66793614-4	chr4	66793505	66793705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-33946.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	6.13421237204868	6.03498515581977	5.8254394926027	6.22826821085387	5.67121571408493	5.62555596870813	5.48006950333327	5.27463930161518	-0.893898320495945	0.000917177010935395	0.0125690686294514
Merged-chr16-75886479-4	chr16	75886395	75886595	+	928.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 2 of 7)	intron (NM_023380, intron 2 of 7)	22771.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	4.42593018439407	4.85757969808861	4.55851909164132	4.55635562574002	4.52991782586995	4.84984937700582	4.7985720272013	4.51316810983035	0.141245443103092	0.696491477605464	0.877228600292293
Merged-chr14-25841950-6	chr14	25841837	25842037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013469)	promoter-TSS (NM_013469)	-218.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	5.03902529047039	5.58782388797497	5.51009730606212	5.31354935682668	5.16048232246607	4.98735406561281	4.82606922804787	5.03646839082649	-0.676942078606128	0.0343445473000112	0.183158972735824
Merged-chr1-133132160-4	chr1	133132076	133132276	+	965.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133819, exon 1 of 2)	exon (NM_133819, exon 1 of 2)	1010.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	4.8316904979347	4.61453346030798	4.47979051494456	4.26221989436771	4.47097386659835	4.7831046517348	5.0542776248124	4.72222048877357	0.471191661217006	0.217102360691946	0.523905917130866
Merged-chr2-117405635-4	chr2	117405526	117405726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEd|LINE|L1	-62749.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	5.57088642037505	5.83583282172629	5.33603504323364	5.74020894242006	5.63919543978125	5.34382294077028	5.78603836881715	5.54076719017528	-0.0905282535022518	0.749687070151501	0.901415182376325
Merged-chr4-48149390-4	chr4	48149262	48149462	+	843.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026343, intron 3 of 7)	intron (NM_026343, intron 3 of 7)	24443.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	3.37490952438966	3.35717902794289	3.11977734191784	3.29842292997444	3.70206918208324	3.60252390017639	3.57370145131026	3.37358443900664	0.94631089279674	0.0643231967841216	0.269495604443875
Merged-chr4-119667574-1	chr4	119667474	119667674	+	595.5	f0_balb.idr	Intergenic	Intergenic	-8629.0	NM_008191	14916.0	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	3.37462645488394	3.3819871899047	3.37510064450068	3.16639755703409	3.19632537419445	3.37630734718271	3.06671260534469	3.26191316269577	-0.343816721820959	0.527615781312102	0.784498766534655
Merged-chr9-58273141-4	chr9	58273034	58273234	+	949.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19970.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	5.37775271108267	4.9968178322857	4.81796092972561	5.32397083737733	4.83703428096	4.8700401321487	5.37765751052073	5.37489083345227	-0.0385345750846568	0.912272414174572	0.967207481621882
Merged-chr5-124328004-4	chr5	124327910	124328110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028310)	promoter-TSS (NM_028310)	-38.0	NM_001277867	269702.0	Mm.60224	NM_001081323	ENSMUSG00000038126	Mphosph9	4930548D04Rik|9630025B04Rik|AW413446|AW547060|B930097C17Rik|C87456|MPP-9|MPP9	M-phase phosphoprotein 9	protein-coding	8.62132518539046	8.78078762970991	8.31457483166803	8.48141746936726	8.46778290938919	8.5967047663852	8.54693725965573	8.52912317787745	-0.0334547470448849	0.838284082012983	0.938633191613918
Merged-chr10-8768870-4	chr10	8768775	8768975	+	980.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	117195.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	6.37911023008211	6.71802255683799	6.47223623993736	5.31998147073713	5.40077668913634	5.90767536418421	5.82422390245033	5.32222588784485	-1.07505194753131	0.00315080279240626	0.0331761822427049
Merged-chr13-95325807-3	chr13	95325681	95325881	+	867.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302539)	promoter-TSS (NM_001302539)	956.0	NM_028106	72114.0	Mm.3774	NM_028106	ENSMUSG00000041995	Zbed3	0610037K01Rik|2610005H11Rik|AU018975|AU024588	zinc finger, BED type containing 3	protein-coding	3.73952859218379	3.90693836725488	3.5622291252224	3.66428144637501	3.94144863424697	4.06811054022794	3.77901392528661	4.23667495231505	0.821572930764958	0.0698232104078566	0.282826368414601
Merged-chr5-21424807-4	chr5	21424711	21424911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029195)	promoter-TSS (NM_029195)	-92.0	NM_177869	330050.0	Mm.40655	NM_177869	ENSMUSG00000047221	Fam185a	4631428I10|AI847670	family with sequence similarity 185, member A	protein-coding	7.99216704069551	7.71931477880016	7.6674974835495	8.10539895871254	7.93883447148643	7.84516874822116	8.19641440709981	7.58181350997265	0.0259444734536423	0.898233338180762	0.962070404152649
Merged-chr10-123112943-4	chr10	123112842	123113042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027604, exon 22 of 22)	3' UTR (NM_027604, exon 22 of 22)	-36437.0	NM_001163025	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	5.63757517246291	5.63034980703163	5.35530593292257	5.94170928635692	5.13237974557916	5.33063439218679	5.83962155646487	5.70844181884257	-0.246444969132678	0.438313715689408	0.726330030804391
Merged-chr19-6922653-2	chr19	6922553	6922753	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007953)	promoter-TSS (NM_007953)	-845.0	NM_007953	26379.0	Mm.386776	NM_007953	ENSMUSG00000024955	Esrra	ERRalpha|Err1|Estrra|Nr3b1	estrogen related receptor, alpha	protein-coding	4.05437507527986	4.1117192938041	3.62649037573216	3.7323048228263	3.97497426606572	4.31137762415782	3.84237800269068	4.00606411531993	0.407760242930774	0.373612349957075	0.677129891634905
Merged-chr2-28840439-4	chr2	28840375	28840575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166033)	promoter-TSS (NM_001166033)	69.0	NM_001033294	227674.0	Mm.44179	NM_001033294	ENSMUSG00000026806	Ddx31	5830444G11Rik|Gm997	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31	protein-coding	5.87801594219709	5.80458098273088	5.71923587920829	5.2136807307699	5.73676261301299	5.6258544757314	5.61542605513773	5.56004807388399	-0.0329175936010752	0.911283889315037	0.96695373445261
Merged-chr2-79698420-4	chr2	79698313	79698513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9367.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	6.86791850282769	6.42599951355318	7.02992344937023	6.90165692469521	6.68741437205394	6.68170262213071	6.76673799560565	6.82402943005533	-0.121577901423841	0.579135630357485	0.815233759185512
Merged-chr11-120989793-3	chr11	120989659	120989859	+	879.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027874, intron 1 of 9)	intron (NM_027874, intron 1 of 9)	1574.0	NM_139059	104318.0	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	3.12271684146654	3.63059088310735	3.12306141845235	2.92313072788496	3.62970507749678	3.65142167572002	3.24175495277568	3.4261779789336	0.944216077474341	0.108241956391683	0.363129274120989
Merged-chr4-56026833-3	chr4	56026738	56026938	+	822.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-494363.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	3.78821614685706	3.45418585863976	3.9273170363859	3.90690336377245	3.66316321886624	3.50662697454015	3.56360029324113	3.83434313633525	-0.416401233286671	0.398123080235794	0.696335068389275
Merged-chr17-85395703-4	chr17	85395604	85395804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028576, intron 6 of 10)	intron (NM_028576, intron 6 of 10)	222692.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	7.38132126227489	7.89719800516263	7.68471985577187	7.96254105041838	7.90960010921321	7.75734720274811	7.86886427246178	7.74482390506146	0.0813477391155147	0.671386340623266	0.86470177576129
Merged-chr11-69877057-4	chr11	69876957	69877157	+	900.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195710, intron 4 of 6)	intron (NM_001195710, intron 4 of 6)	961.0	NM_001195710	100503361.0	Mm.340490	NM_001195710	ENSMUSG00000094845	Tmem95	432576	transmembrane protein 95	protein-coding	4.64409533088992	4.49933546950365	3.83870738368261	4.15664838920456	4.40056859345842	4.40844444831078	4.47414170385002	4.67644283797427	0.411757035990192	0.33072454864695	0.642064222347296
Merged-chr3-60472903-6	chr3	60472720	60472920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253713)	promoter-TSS (NM_001253713)	-10.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.51457641847427	4.36031981864794	4.43177822032805	4.48152879694446	4.76326398105645	4.32270369353899	4.49456741515737	4.55212368513256	0.237861211268424	0.518188169747602	0.779362628036693
Merged-chr14-75178838-7	chr14	75178680	75178880	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	42355.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	4.85049227087667	4.69924677822626	4.88692912095175	4.33653592729873	4.93127035083552	5.12731916236905	5.17039046579833	4.5213828350116	0.543498026901112	0.14537777892168	0.424835609165878
Merged-chr13-56178743-4	chr13	56178636	56178836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001168615, exon 1 of 3)	5' UTR (NM_001168615, exon 1 of 3)	149.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	6.58614522143105	7.01426233584373	6.7427756894441	7.40532605664155	6.32872195824512	6.40678472671339	6.89724696919918	6.76686547561892	-0.527252616460052	0.0476813219338484	0.225209609418009
Merged-chr11-96978350-2	chr11	96978250	96978450	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080964)	promoter-TSS (NM_001080964)	-662.0	NM_001080964	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	3.09185683588074	2.93616516428868	2.95441440304477	2.95593268924235	3.41683891077321	3.65267402805529	3.31782621140448	3.38325202947417	1.74724137062683	0.00143605650692371	0.0180023011811065
Merged-chr1-54564150-4	chr1	54564049	54564249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	-6465.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	6.95917556740558	7.44523086079469	6.90625883739901	7.32058089857441	7.16969373691924	7.29852192570203	6.95132116129602	6.96864411174179	-0.113746525542011	0.59990365668305	0.826616767892885
Merged-chr6-99784991-4	chr6	99784874	99785074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-58582.0	NM_001037539	50501.0	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	5.51902121805539	5.95194583160353	5.60014110007022	5.26688759034794	5.5691915904853	5.48811878709493	5.3776960822624	5.57005020404814	-0.156692348973009	0.600116345620595	0.826731739315186
Merged-chr18-36471721-4	chr18	36471642	36471842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-17247.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	6.5286456363213	6.76207763213198	6.33312321682121	6.70037783800342	6.72676751619566	6.63835647537525	6.51283110274266	6.49160082346139	-0.00226417808678329	0.991752307903525	0.996850067418838
Merged-chr4-116708460-4	chr4	116708362	116708562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025962)	promoter-TSS (NM_025962)	-77.0	NM_025962	67096.0	Mm.252785	NM_025962	ENSMUSG00000028690	Mmachc	1810037K07Rik|CblC	methylmalonic aciduria cblC type, with homocystinuria	protein-coding	8.09424236129905	7.83406926220304	8.31784580465711	8.25064557101977	7.97292608231342	7.88625136228608	8.32086687743913	8.32835774730194	0.00308166728386252	0.987316085699033	0.995258250959001
Merged-chr5-5481902-3	chr5	5481810	5482010	+	895.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2767.0	NM_001200025	381716.0	Mm.276086	NM_001200025	ENSMUSG00000079666	1700015F17Rik	Gm1686	RIKEN cDNA 1700015F17 gene	protein-coding	3.35332892037318	3.12991602190558	3.68232933669175	3.33916270048596	3.14260214662782	3.09386594538283	3.10873508098716	3.1176994715043	-1.0306238489587	0.0730254148068189	0.290855352276569
Merged-chr10-120136332-4	chr10	120136242	120136442	+	829.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-23377.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	4.66156473517371	4.06968301843159	4.28748463893409	4.49947211916549	3.95714959450335	4.1190763360298	4.17869882941886	4.24040068836726	-0.692160623858519	0.0984028242102424	0.343967717156649
Merged-chr8-104099519-4	chr8	104099432	104099632	+	835.741638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131138, intron 1 of 2)	intron (NR_131138, intron 1 of 2)	-2093.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	4.38210039793226	4.39918518586815	4.00706456733523	4.22407515489502	4.10505649457664	4.38143536940852	4.32166834943542	4.33865408480365	0.0544095799176339	0.891294380317991	0.959325726463795
Merged-chr8-46130580-2	chr8	46130480	46130680	+	830.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6434.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	3.2850894265306	3.11339900685611	3.06418941690737	2.98248226145403	3.09838543034659	2.90274094837486	3.05341615528371	3.23224422426204	-0.12333140946671	0.831329602046802	0.935323002356585
Merged-chr2-164470418-3	chr2	164470276	164470476	+	753.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001271575)	TTS (NM_001271575)	3348.0	NM_001271575	73603.0	Mm.472883	NM_001271575	ENSMUSG00000017720	Trp53tg5	1700126L10Rik	transformation related protein 53 target 5	protein-coding	3.72719733104938	3.49405453395873	3.42449899394351	3.46864425627913	3.62659282043276	3.53812537013397	3.41191055606655	3.24031042208378	-0.207193131454973	0.688058667284616	0.872614457715549
Merged-chr1-144283990-3	chr1	144283891	144284091	+	791.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-34887.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	3.79778485127605	3.64886402410404	3.84670144252919	3.5313495674781	3.55215213697669	3.51378480085098	3.87587649303007	3.97897255211978	0.122636453748715	0.801249360448326	0.923340719847852
Merged-chr17-29492937-4	chr17	29492834	29493034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008842, intron 4 of 5)	intron (NM_008842, intron 4 of 5)	1889.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	6.69220405953434	6.6578745055165	6.63469320720621	6.13595972669997	6.28713016786961	6.44928620412235	6.49146384341516	6.82420318736341	-0.0169242755935039	0.94636533514449	0.980868358011675
Merged-chr8-116980283-4	chr8	116980193	116980393	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1334.0	NM_001357255	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	5.09772349174345	5.31829411655949	4.80464544639164	4.9844545628226	5.19596345993306	4.89980453403528	5.3886193192245	5.06187479287966	0.169804822471822	0.601138999252727	0.827071740947179
Merged-chr1-171184513-4	chr1	171184417	171184617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025557, intron 1 of 2)	URR1B|DNA|hAT-Charlie	11751.0	NM_025557	66425.0	Mm.482117	NM_025557	ENSMUSG00000038370	Pcp4l1	1500036F01Rik	Purkinje cell protein 4-like 1	protein-coding	7.00433164319705	6.85850093997038	6.3646895228389	6.39316147645486	6.91564004524035	7.05623683816341	6.79118729920783	7.08153486396979	0.406819841400574	0.0849861131802681	0.31722830510558
Merged-chr17-66076271-6	chr17	66076134	66076334	+	945.486084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025572, intron 1 of 12)	intron (NM_001025572, intron 1 of 12)	812.0	NM_001025572	106585.0	Mm.34706	NM_001025572	ENSMUSG00000034647	Ankrd12	2900001A12Rik|AI447928|ANCO-2|AV347965|GAC-1|mKIAA0874	ankyrin repeat domain 12	protein-coding	3.55586142415153	3.42560296015646	3.50238947970581	3.58032003820707	3.48688737419306	3.43839016930193	3.43332199956541	3.74944858520495	0.0390111202013133	0.937095186909616	0.977210490892393
Merged-chr12-78861676-4	chr12	78861589	78861789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026114)	promoter-TSS (NM_026114)	-51.0	NM_023721	73834.0	Mm.311549	NM_023721	ENSMUSG00000021114	Atp6v1d	1110004P10Rik|Atp6m|VATD|Vma8	ATPase, H+ transporting, lysosomal V1 subunit D	protein-coding	8.15174452931136	8.4516061698435	8.40779063526355	8.35164768360616	8.43868645017273	8.70548370405189	8.61878423607457	8.40232758492628	0.249525337626295	0.124841751340473	0.39218277534506
Merged-chr7-121469601-4	chr7	121469495	121469695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081327, intron 1 of 1)	G-rich|Low_complexity|Low_complexity	77299.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	5.54736029870549	5.09467300382562	5.54832693456572	5.94924040131362	5.83966851269853	5.51731976087023	6.06716795935993	5.30213338161429	0.222836907404879	0.508386834220753	0.773487228743275
Merged-chr4-149340910-4	chr4	149340821	149341021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022022, intron 22 of 26)	intron (NM_022022, intron 22 of 26)	6282.0	NR_131918	74310.0	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	5.89415370390759	5.82682089382773	6.06071466892124	6.09391534769461	5.54327605858743	5.56447562309782	5.6497892451659	5.67444438037025	-0.616154516594383	0.0152744853427273	0.106228491042462
Merged-chr10-93161698-8	chr10	93161549	93161749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146239, intron 1 of 16)	CpG	773.0	NM_146239	237459.0	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	5.78015227963828	6.05283150456636	5.59840892704164	5.3331797431878	5.86706360757489	6.04924412788118	6.01255278575926	5.64935906850964	0.320062596431545	0.270193724295003	0.582015467304019
Merged-chr16-3743122-2	chr16	3743010	3743210	+	696.5	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_148924)	promoter-TSS (NM_148924)	-989.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	4.13141869727397	4.4308080247443	3.70340092799878	3.80305547446227	3.96760866068966	4.2583707095068	3.97030346385371	4.3393787937119	0.245533673650283	0.599644603435352	0.826531820835107
Merged-chr15-66729647-4	chr15	66729541	66729741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009375, exon 27 of 48)	exon (NM_009375, exon 27 of 48)	58871.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	6.19507561681607	6.03571139083643	6.40401207370151	6.53414596698709	5.34461459840327	5.52923026749126	6.18283713175129	6.05248618059852	-0.773452814133209	0.0100971767485948	0.0794766055278367
Merged-chr15-98763262-4	chr15	98763166	98763366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007478)	promoter-TSS (NM_007478)	-148.0	NM_007478	11842.0	Mm.221298	NM_007478	ENSMUSG00000051853	Arf3	5430400P17Rik|AI854770	ADP-ribosylation factor 3	protein-coding	6.68371509302338	6.53521597349306	5.99566371237398	6.12188652752971	6.67476959529591	6.74030089731759	6.53087947950968	6.68012157972348	0.442786600236833	0.0700686492693971	0.28332843374232
Merged-chr6-5159520-4	chr6	5159424	5159624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 15 of 15)	intron (NM_181595, intron 15 of 15)	34422.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	6.55824846229877	6.27821144878991	6.93037881837261	7.06766182201184	6.29773227087858	6.2116045724315	6.44357653429932	6.43752014136627	-0.591557920741773	0.0206805068083416	0.130950786772614
Merged-chr2-145741793-4	chr2	145741704	145741904	+	984.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	40609.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	4.52626695064827	4.83039484770053	4.76926762703027	4.83209084005455	4.9204622315573	4.74588709748523	4.85147902780823	4.38388512869636	-0.00685960364786866	0.984695747988489	0.994405235884352
Merged-chr4-109245834-3	chr4	109245715	109245915	+	668.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033226, intron 5 of 7)	intron (NM_001033226, intron 5 of 7)	10183.0	NM_001033226	108802.0	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	3.53759531027426	4.08239083278092	3.53811686048414	3.5207750466905	2.98274799995962	3.2230983375454	3.23496025074684	3.24458080291072	-1.93067423668899	0.00111392312026402	0.0146558103100319
Merged-chr7-141458551-4	chr7	141458453	141458653	+	919.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025802, intron 5 of 7)	intron (NM_025802, intron 5 of 7)	-2541.0	NM_001025103	213573.0	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	5.01717130955866	4.45807081261904	4.32440499511005	4.32604706986162	4.54427913978407	4.67920818499041	4.67766437559859	4.32178517967062	0.0195613536541465	0.961119512599722	0.98607960708679
Merged-chr7-6398720-4	chr7	6398630	6398830	+	886.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15412.0	NM_175247	22690.0	Mm.127014	NM_175247	ENSMUSG00000062861	Zfp28	2810438M17Rik|Zfp-28|mkr-5	zinc finger protein 28	protein-coding	4.3004177900902	3.6372272129733	4.17572264284511	4.14754746667076	3.9675094005627	3.8871977452169	4.06684346485468	4.41205431482653	0.0266829386965919	0.95413588746717	0.983682715111683
Merged-chr6-97278573-4	chr6	97278477	97278677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-25797.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	5.31608753157746	5.38635054050183	5.6765902058167	4.90818257323461	5.1072206643314	5.23161841919644	5.31965716241668	5.34266706523085	-0.151118853035532	0.644213000661621	0.850114377563949
Merged-chr6-33835423-4	chr6	33835316	33835516	+	991.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 12 of 17)	intron (NM_009148, intron 12 of 17)	-194032.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	5.24810863748244	5.66798399130692	5.90455880244909	6.42750365041603	6.17092826577551	5.85396949227715	6.31959102773148	6.28056616062953	0.409530493929539	0.216620833284368	0.523258366727119
Merged-chr11-19823687-3	chr11	19823549	19823749	+	836.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100793.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	3.62738823457026	3.44199215748457	3.27595707690239	3.3894127396855	3.58822248209553	3.74635006925252	3.45058285059873	3.8594522963085	0.744055711248366	0.135417609724671	0.409658271465803
Merged-chr10-81430682-10	chr10	81430519	81430719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3446.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	5.44924592539302	5.66186064721743	5.70997106620136	5.17175581945606	5.67470778005813	5.56693855613569	5.47895393678186	5.38741131404476	0.0671860581941251	0.819820217582278	0.931038192981049
Merged-chr2-11771921-4	chr2	11771820	11772020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348235, intron 1 of 20)	intron (NM_001348235, intron 1 of 20)	5665.0	NM_001348234	50755.0	Mm.24088	NM_015792	ENSMUSG00000058594	Fbxo18	AU015756|Fbh1|Fbx18	F-box protein 18	protein-coding	5.42776724286774	5.30885838578927	5.59404494284651	5.8179634668052	5.62389702040502	5.31191271821025	5.64049608027297	5.5102104929585	-0.0611192756170466	0.833892219810805	0.936577740653464
Merged-chr11-62251235-4	chr11	62251124	62251324	+	979.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007413, intron 1 of 1)	intron (NM_007413, intron 1 of 1)	2240.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	5.30158780473155	5.43442786219496	5.59250513211182	5.44926068188661	5.23692181365279	4.98259764843565	4.94139785173038	5.10725214549135	-0.671155992676325	0.0247748285896659	0.147556482652818
Merged-chr13-37322947-4	chr13	37322866	37323066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22379.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	4.9272652495596	5.15670743996661	5.03384250395852	4.66387303988195	5.03097438172138	5.3341305732459	5.04243519807922	5.06376763993735	0.342697457596133	0.295501794877637	0.607448803142013
Merged-chr19-43511735-4	chr19	43511641	43511841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 2 of 8)	intron (NM_010324, intron 2 of 8)	12864.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	7.03420144706513	6.99858783644941	6.89816596697638	7.14648827016667	6.41091809586354	6.60235971197532	7.03472476053081	6.82557356100774	-0.415778051832913	0.060750346694767	0.260428145470177
Merged-chr15-82218976-4	chr15	82218871	82219071	+	923.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5409.0	NM_028075	72049.0	Mm.240047	NM_028075	ENSMUSG00000068105	Tnfrsf13c	2010006P15Rik|BAFF-R|Baffr|Bcmd|Bcmd-1|Bcmd1|Lvis22	tumor necrosis factor receptor superfamily, member 13c	protein-coding	4.02524367048377	4.47059735814632	4.57408278766276	4.23060254155797	4.29261328954838	4.45756124363504	4.47641112827154	4.60762170210892	0.284280921681902	0.470360079439556	0.749078941154353
Merged-chr8-109681626-3	chr8	109681495	109681695	+	769.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155034, intron 4 of 10)	MTB_Mm|LTR|ERVL-MaLR	11699.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	2.79129904758592	2.78012098503792	2.9908500368377	2.86783212379602	3.30605559303508	3.27637702900966	2.98012654338028	2.98935059978995	1.19995184733855	0.0434020612777883	0.211930803299149
Merged-chr5-3461020-4	chr5	3460947	3461147	+	847.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	-82786.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	4.03892334909141	3.83141739199841	3.75702151224883	3.98696111584318	3.80700038906544	3.92852724859542	3.57561966351532	3.52547710503111	-0.558306040363181	0.236120457478645	0.546101444075659
Merged-chr19-53423939-2	chr19	53423839	53424039	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33305.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	2.87971918195818	2.66716964423098	2.98404181406401	2.71867703897647	2.43445984918061	2.45509833552334	2.56745759442	2.429860566899	-1.92369918377341	0.00968001318006183	0.0771312726008755
Merged-chr1-85853489-4	chr1	85853403	85853603	+	995.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41007.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	5.49048445058583	5.45133632457406	4.84059634067813	5.27138346876969	5.44927068667943	5.17736005640501	5.24320319182442	5.06920115192771	-0.0678390023346674	0.832390594140458	0.935835439369668
Merged-chr7-98355462-4	chr7	98355359	98355559	+	920.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168541, intron 2 of 3)	intron (NM_001168541, intron 2 of 3)	5829.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	4.54198144172252	4.08229417381241	4.5051352420201	4.53194251501942	4.24252986886264	4.12062946722214	4.32294390360383	4.3823044968785	-0.385731047978562	0.332581088232137	0.643531688755946
Merged-chr10-75591719-4	chr10	75591620	75591820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359425, intron 1 of 7)	intron (NM_001359425, intron 1 of 7)	2339.0	NR_153110	23887.0	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	7.23386786218247	7.11423650044546	6.93818736749832	7.44755448078081	7.04739832878876	6.61512186468379	7.18831175213443	7.1870538073085	-0.239482078731196	0.28363419185385	0.595722718088449
Merged-chr10-75512663-4	chr10	75512549	75512749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347201, intron 1 of 5)	intron (NM_001347201, intron 1 of 5)	4732.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	6.36667271283523	6.56138264456535	6.27273384035414	6.31306912151768	6.52173853044781	6.48857436024656	6.89780060914575	6.30710719884405	0.279692779920571	0.230918391418666	0.540396396919272
Merged-chr9-64105488-4	chr9	64105418	64105618	+	916.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11629.0	NM_145835	235435.0	Mm.436581	NM_145835	ENSMUSG00000032401	Lctl	E130104I05Rik|KLPH	lactase-like	protein-coding	5.0650385211706	4.94233335780217	5.06590510737141	4.90667554012176	4.63216889111604	4.67748208538231	4.77159917588117	4.7130642378185	-0.603402963603596	0.0654717142125453	0.272402550939455
Merged-chr11-103249706-4	chr11	103249619	103249819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	17682.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	6.53856289840497	6.49968255768913	6.44131918970301	6.43350328131515	6.47141965051581	6.24507182149328	6.47451932904443	6.27308177297396	-0.145377696242843	0.49833939599648	0.76759838054097
Merged-chr12-87407069-4	chr12	87406970	87407170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-18715.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	6.07341129394329	6.88372826490175	6.67629213802448	6.39038370220883	6.62032902020389	6.57861188887624	6.48884687585563	6.39729561676005	-0.0192772803678798	0.938518421207171	0.97772122507289
Merged-chr11-103272168-4	chr11	103272103	103272303	+	775.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4802.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	3.84091406640355	4.0259805839639	3.8414532783242	3.65945273128363	3.93513987861224	4.29440424649814	3.82585358751438	4.03586118493284	0.526154077522227	0.23845956207111	0.548836356743826
Merged-chr8-72323260-4	chr8	72323168	72323368	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4206.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	4.63681891087297	4.32598084675859	4.4245923229867	4.55849732083876	4.77353481409314	4.73046839867644	4.82985751147561	4.78238220199198	0.609727025896657	0.0775698024564312	0.301202387706416
Merged-chr1-162570579-4	chr1	162570487	162570687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347125)	promoter-TSS (NM_001347125)	72.0	NM_001356526	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	8.59886697147461	8.86031862121637	8.89927172804661	8.48743967253695	8.58599730874871	8.81508608964287	8.93443789076546	8.76139090748331	0.0736476444949126	0.667819062284703	0.86269860316448
Merged-chr18-34778277-2	chr18	34778177	34778377	+	865.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081256, intron 1 of 23)	intron (NM_001081256, intron 1 of 23)	1269.0	NM_001081256	277250.0	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	2.96468243254221	2.85700481307046	2.9650892712023	2.78184958670376	2.80025425290077	2.75695879133988	2.64656465944886	2.78585114411707	-0.65450315607039	0.300187078086039	0.61225295942824
Merged-chr2-45116051-7	chr2	45115836	45116036	+	924.31427	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355288, intron 1 of 10)	intron (NM_001355288, intron 1 of 10)	1506.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	3.91742748548234	3.53033136773503	3.66403583512958	3.33927306510771	3.84958046090573	4.04137464557409	3.80586006380109	3.86869513397265	0.83220040935104	0.0837237148113212	0.314594852798133
Merged-chr14-13549044-2	chr14	13548944	13549144	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163032, intron 2 of 4)	intron (NM_001163032, intron 2 of 4)	95086.0	NM_001163032	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	3.01676624845312	2.97065112551613	3.01713644744333	2.88491032994557	3.20018038257635	2.92658297174644	2.94476326666183	3.28904747752806	0.558799386680011	0.336359795629751	0.646393096280408
Merged-chr19-38022898-4	chr19	38022790	38022990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 2 of 53)	intron (NM_001302140, intron 2 of 53)	20687.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	7.12791458444097	7.23803904416768	7.6991900346552	7.17397370377527	6.61992020869836	7.03955017008441	6.99828432878898	6.67400796236276	-0.669299728204681	0.00319689075294186	0.0335324914387929
Merged-chr6-37143880-5	chr6	37143817	37144017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 2 of 32)	intron (NM_001347104, intron 2 of 32)	156059.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	5.04689616954735	5.02078067183611	5.57659113296904	5.75382673656222	5.60888247329925	5.33672861864996	5.32786962990945	5.78274777339435	0.214135353300194	0.525414490928053	0.783252235625498
Merged-chr11-120046933-2	chr11	120046847	120047047	+	946.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001198785, exon 1 of 14)	exon (NM_001198785, exon 1 of 14)	198.0	NM_001198785	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	3.33336055770724	3.29083262932666	3.38449360100066	2.95998953075072	3.00492236920094	3.01866395897243	3.09725808940683	3.10681229582296	-0.746041748254639	0.204516894048605	0.507782437802491
Merged-chr14-30828323-3	chr14	30828218	30828418	+	777.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028839, intron 1 of 7)	intron (NM_028839, intron 1 of 7)	2724.0	NM_028839	69179.0	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	3.74325731530668	3.87122817281437	3.69261255352424	3.14671423920039	3.61874382808331	4.05473593032704	3.38988387754788	3.58175489200172	0.132670392711055	0.811505183189383	0.927071669409641
Merged-chr9-53603560-4	chr9	53603468	53603668	+	897.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144784, intron 1 of 11)	intron (NM_144784, intron 1 of 11)	6782.0	NM_144784	110446.0	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	4.28227091319108	3.82087578008479	3.86703802891341	4.26084897716725	4.16648683246944	3.98808233264537	4.09654117545791	3.91828142571498	-0.0903717415530784	0.838298014144477	0.938633191613918
Merged-chr2-166676649-4	chr2	166676557	166676757	+	955.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	37175.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.07244095594469	4.40232935333445	4.51983107761943	4.60434061339249	5.15031546013857	4.60884678359906	4.41290597213067	4.78181369139814	0.761690216451184	0.061827254367799	0.263095721805797
Merged-chr16-58690579-4	chr16	58690453	58690653	+	838.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20345.0	NM_007757	12892.0	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	4.28271737807745	3.86161800435283	4.32247775409775	4.34029610606114	3.71938901344201	3.98602086324371	3.90194498729389	3.96732768821477	-0.889146072464588	0.0452813796901008	0.217849498138674
Merged-chr11-105485147-4	chr11	105485058	105485258	+	958.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-28423.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	4.73607178940663	4.61828708442837	4.06244828684505	4.45854747497741	4.69508350674438	4.50490875636291	4.56712643432246	4.73366458326894	0.308496664239886	0.419138279452353	0.712251159515261
Merged-chr14-46886126-4	chr14	46886013	46886213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	3148.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	5.57686682019475	5.29299806690818	5.55269183724441	5.62042671557232	5.04080671674924	5.24120675965439	5.41937648417135	5.29663955163755	-0.489755265477718	0.0932241638890043	0.333999476247635
Merged-chr6-113662093-4	chr6	113662035	113662235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	23668.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	5.07553864571136	4.81685093617661	5.13889967019198	5.17749404886759	5.33136385710554	4.84310203144458	4.64300157318059	4.86469427109788	-0.192892295518628	0.584210973976446	0.817552638829506
Merged-chr2-152962335-4	chr2	152962222	152962422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083618)	promoter-TSS (NM_001083618)	-163.0	NM_029064	74711.0	Mm.44746	NM_029064	ENSMUSG00000074673	Ttll9	1700016F23Rik|4930509O20Rik|AW046572	tubulin tyrosine ligase-like family, member 9	protein-coding	8.17125932654994	8.00843147861195	8.1162717999357	8.03870182568907	8.53043188270642	8.35014239498585	8.51934302717783	8.22700584124942	0.427056343710432	0.00767225471333751	0.0652609247419516
Merged-chr2-92004882-3	chr2	92004795	92004995	+	736.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011957, intron 1 of 11)	Charlie9|DNA|hAT-Charlie	19275.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	3.63432428411171	3.85058565374854	3.68230497458341	3.65425124224573	2.88781165560755	3.29060741561664	3.29452462034616	3.03120351215368	-2.25545654073166	0.000208123787128638	0.00376277445873236
Merged-chr13-4650413-4	chr13	4650305	4650505	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41241.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	4.80607871061683	4.73332098108678	4.98812298120164	5.01642444132776	4.77822743937476	5.09199096725176	5.17879864430205	4.95053324342615	0.197505384392768	0.548395777099972	0.797382448842745
Merged-chr1-13360855-4	chr1	13360761	13360961	+	894.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	RLTR12BD_Mm|LTR|ERVK	11568.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	4.18255711080449	4.66024084448751	4.37575232598825	4.4111649584707	4.48569684862363	4.50486092631176	4.56052044517436	4.5790323898449	0.247643604318841	0.5043387299691	0.770655921364685
Merged-chr2-176708452-2	chr2	176708352	176708552	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099327)	promoter-TSS (NM_001099327)	99.0	NM_001099327	100043387.0	Mm.444048	NM_001099327	ENSMUSG00000078878	Gm14305	-	predicted gene 14305	protein-coding	4.70559603029873	4.39383025440376	4.92740693234672	4.16278527175844	3.91934028204258	4.38510617210039	4.45900064606227	4.47704369824094	-0.569523910864539	0.195983020493691	0.496914343164112
Merged-chr7-118118585-4	chr7	118118498	118118698	+	958.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019419)	TTS (NM_019419)	-2451.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	5.50386620479967	5.145435284111	5.39419100073506	5.72077469537689	5.50780136271479	4.91506967622854	5.47708187900236	5.44690010325883	-0.184151333312679	0.565196791411714	0.807364033311814
Merged-chr9-105121384-4	chr9	105121297	105121497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10408.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	6.19480389862456	6.33781733427652	6.65393082936295	6.36576022939018	5.64219332203205	5.83782954331266	5.71251277373292	5.93887565437452	-0.962829031788933	0.000103367862362474	0.00208726839009888
Merged-chr12-26415282-4	chr12	26415197	26415397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081977)	promoter-TSS (NM_001081977)	-35.0	NM_080563	108089.0	Mm.214932	NM_080563	ENSMUSG00000020642	Rnf144a	Rnf144|UIP4|Ubce7ip4	ring finger protein 144A	protein-coding	6.26259742138846	6.2090681950326	5.89641887745442	6.35743618050759	5.967771722938	5.94987201336469	6.00028235513826	5.54045026551382	-0.504627033373642	0.0514916104422879	0.235727030248731
Merged-chr10-118604149-3	chr10	118604057	118604257	+	739.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-47632.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	3.15417900976698	3.43847199756546	3.37493359896128	3.51270196132171	4.1554737020029	4.09783956857743	3.66478222416861	4.17009782247592	1.94001749584951	0.000284680671826947	0.00485930108872188
Merged-chr15-74752975-4	chr15	74752876	74753076	+	837.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011838)	promoter-TSS (NM_011838)	3.0	NM_011838	23936.0	Mm.257067	NM_011838	ENSMUSG00000022594	Lynx1	AI838844|SLURP-2	Ly6/neurotoxin 1	protein-coding	4.12098442896271	3.73923932943283	3.72576537966182	3.75519894431088	4.11454652648901	4.28941877078432	3.82102479900537	3.83442183687428	0.526032665988759	0.248056861905883	0.559137354284593
Merged-chr19-53906316-4	chr19	53906242	53906442	+	889.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168491, intron 1 of 11)	intron (NM_001168491, intron 1 of 11)	2991.0	NM_001168491	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	4.30830584136013	3.82693373305466	4.42986020985126	4.48127430157554	3.96673565088986	4.39355108169969	4.15718818533593	4.17283487804614	-0.292284905562488	0.505305554464832	0.771429822864883
Merged-chr1-74362078-4	chr1	74361989	74362189	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033345)	promoter-TSS (NM_001033345)	-19.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	5.0124291194715	5.21394049580825	4.72748618764648	4.97710183086221	5.28687321438916	5.66751627599692	5.46854043700404	5.27413273818099	0.790761693204492	0.0108339630527905	0.0836479722458594
Merged-chr4-85374229-2	chr4	85374134	85374334	+	674.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_019535, intron 3 of 8)	intron (NM_019535, intron 3 of 8)	168778.0	NM_019535	20404.0	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	2.32092869540246	2.34620896026274	2.40522858539858	2.04387392336874	3.00573510742512	3.0027551664605	3.08365325717207	2.82543984031576	5.31055545010939	7.49685073486461e-09	4.07653428920495e-07
Merged-chr17-56673242-4	chr17	56673133	56673333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027933)	promoter-TSS (NM_027933)	8.0	NM_027933	71810.0	Mm.29608	NM_027933	ENSMUSG00000002372	Ranbp3	2610024N24Rik|AA408221	RAN binding protein 3	protein-coding	8.51300633389569	8.70964564037985	8.09346461213875	8.34083962555998	8.2109408039227	8.46839259346296	8.4166266748756	8.27948799111885	-0.112700699930812	0.540015039770067	0.792463821677907
Merged-chr2-164833606-4	chr2	164833439	164833639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008906)	promoter-TSS (NM_008906)	57.0	NM_001082974	415115.0	Mm.474586	NM_001082974	ENSMUSG00000039873	Neurl2	Neur2|Ozz|Ozz-E3	neuralized E3 ubiquitin protein ligase 2	protein-coding	6.72963445798935	6.60505984515874	6.80100404246482	6.57462488705112	6.59204371488666	6.7377394095408	6.52753369189153	6.90081492612033	0.0300062215327212	0.886805509016327	0.957513044740158
Merged-chr3-19215896-4	chr3	19215789	19215989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 5 of 7)	intron (NM_001356295, intron 5 of 7)	27594.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	6.56530000021531	6.19532835792747	6.48784620383764	6.73300857367293	6.38390180260807	5.82694029099205	6.42189353291957	6.29077446322279	-0.385504359079937	0.12987991837183	0.401176996605992
Merged-chr13-108044452-4	chr13	108044344	108044544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001048250)	promoter-TSS (NM_001048250)	-30.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	8.0059630150785	7.86560077289637	7.91752003156545	7.73550304299145	8.10843632720645	7.9827553283231	8.0586813037758	7.84606197363503	0.166769988765129	0.318176610825637	0.63005001767612
Merged-chr11-20638966-2	chr11	20638866	20639066	+	894.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038625, intron 1 of 1)	intron (NM_001038625, intron 1 of 1)	6989.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	3.04503063775025	3.16852641027768	2.98597411685966	2.86681041165131	2.8935978433221	2.89545218220745	2.975416394416	3.10043063924324	-0.205972794061838	0.728647965379108	0.892183883708104
Merged-chr16-32638692-3	chr16	32638589	32638789	+	833.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5954.0	NM_001110147	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	3.73313374845073	3.44979246210156	3.63518009165605	3.56252162807833	3.31834479029484	3.58747504216238	3.39995210290103	3.77784153304177	-0.221823089637458	0.661797800259929	0.859584781750361
Merged-chr2-103604397-4	chr2	103604280	103604480	+	990.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	38070.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	5.21503676600598	5.70950517789633	5.72711572367849	5.9467959968346	5.63631062810146	5.59876404865873	6.09550649289862	5.84120769095387	0.185080786392473	0.537180435362301	0.790977285921248
Merged-chr4-131920366-4	chr4	131920330	131920530	+	956.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102393)	promoter-TSS (NR_102393)	-401.0	NR_102393	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	4.70529985074126	4.67525153749331	5.30763522334778	5.31467409859738	4.74401269456703	4.61943009693152	4.83531950107327	4.43460016262926	-0.769497017384842	0.0433064896745095	0.21166741938762
Merged-chr11-74533198-2	chr11	74533098	74533298	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	56960.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	2.97304984704707	2.81106511652585	2.91893928599663	2.92012560330988	2.57091048630696	2.55674881306813	2.66570569052493	2.67267841762458	-1.49347400375287	0.0266291508145939	0.154919192957252
Merged-chr11-74522774-4	chr11	74522711	74522911	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	CpG	67347.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	4.9168345172096	4.69785224178746	4.69637634515851	4.78907259922641	5.18427467780157	4.65713346194771	4.59235686636252	4.94767632141319	0.214806766293126	0.543202367361445	0.794367638237739
Merged-chr17-79347436-4	chr17	79347350	79347550	+	672.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026514, intron 1 of 1)	intron (NM_026514, intron 1 of 1)	7641.0	NM_026514	260409.0	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	3.54294228831785	3.93134616062855	3.84913134933455	4.42654397392398	4.19318138980995	4.07671001878434	3.9869095721243	4.1822103027657	0.29676801947073	0.554044491161457	0.800510731013571
Merged-chr10-87862210-4	chr10	87862113	87862313	+	774.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111274, intron 1 of 4)	intron (NM_001111274, intron 1 of 4)	1102.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	3.41535662343227	3.35542415194751	3.63872806159311	3.4602786271471	3.59829011196729	3.648685000521	3.51825411581392	3.86925424553913	0.621060271013745	0.203175594149935	0.505906234380403
Merged-chr4-19856282-1	chr4	19856182	19856382	+	825.5	f0_balb.idr	Intergenic	Intergenic	37555.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	3.8637519776983	3.74610900785561	3.99376064817972	3.8374301228272	3.55866790245495	3.26972628381995	3.54394874152868	3.61181393684414	-1.12053361842433	0.0245804458492503	0.146732843796412
Merged-chr18-12655275-4	chr18	12655173	12655373	+	777.641663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 1 of 13)	intron (NM_028341, intron 1 of 13)	11740.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	3.91007339898549	3.66311195962052	4.2077909070989	3.87125216653355	4.31605176927107	4.14289624991044	4.62706912387868	4.24857838865009	1.08398596832997	0.0118659489998538	0.0891969990348074
Merged-chr16-21392840-4	chr16	21392696	21392896	+	880.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30322.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	3.34957431189875	3.42229814910776	3.35000175867902	3.33242229123989	3.42675153685534	3.46286016651799	3.2192982042516	3.55924921972071	0.210590792323469	0.68002310357692	0.868593041138696
Merged-chr1-91494574-4	chr1	91494443	91494643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028718)	promoter-TSS (NM_028718)	-125.0	NM_028718	74019.0	Mm.318430	NM_028718	ENSMUSG00000034292	Traf3ip1	3930402D05Rik|AU041749|MIP-T3	TRAF3 interacting protein 1	protein-coding	6.46694451013572	6.58634500326143	6.39512298108199	6.85631328688989	6.73569212323956	6.39334073012978	7.18260645221687	6.67498318864864	0.254373737255464	0.311618846999854	0.623631959698671
Merged-chr19-5018944-4	chr19	5018836	5019036	+	848.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5070.0	NM_007854	13340.0	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	4.99086673142107	4.76131743006228	4.52405016399572	4.2271516660164	4.78396657182944	4.78240296823706	4.45977923116946	4.68400365838268	0.0949643747363017	0.808490317236022	0.926092305157072
Merged-chr9-122950399-4	chr9	122950307	122950507	+	822.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010620)	promoter-TSS (NM_010620)	593.0	NM_025419	66202.0	Mm.268307	NM_025419	ENSMUSG00000032551	1110059G10Rik	-	RIKEN cDNA 1110059G10 gene	protein-coding	3.39882253274658	3.79863887659703	3.13176372409901	3.40473141669399	3.84520216998813	3.51403397845098	3.55541294120905	3.66998053081723	0.636528546851138	0.236495868977794	0.546570557203369
Merged-chr5-139380566-4	chr5	139380464	139380664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030258)	promoter-TSS (NM_030258)	-75.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	7.86483479628747	7.89373967630023	7.6564090982346	7.84526221568015	7.58721008506575	7.57160113991449	7.60197898693412	7.53612970481888	-0.32290622938575	0.0511584914854224	0.234706899586286
Merged-chr11-75541151-4	chr11	75541067	75541267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	9055.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	7.09316235396781	7.07279710558678	7.16305787237556	6.90456877617424	7.11005387717368	7.27093147182054	6.89625187244934	7.06566873827334	0.0541743721701777	0.781061674661894	0.914773964552732
Merged-chr6-120836676-3	chr6	120836569	120836769	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153516, intron 1 of 6)	intron (NM_153516, intron 1 of 6)	439.0	NM_153516	94044.0	Mm.27990	NM_153516	ENSMUSG00000009112	Bcl2l13	BCL-RAMBO|E430016C20Rik|Mil-1|Mil1	BCL2-like 13 (apoptosis facilitator)	protein-coding	4.96077389989727	4.99107585940184	4.73943885502566	4.67550587719373	4.65168006369466	5.10021195116477	4.75674966238244	5.2586103177131	0.232210793161888	0.510110463201777	0.774513270041275
Merged-chr5-3490040-2	chr5	3489940	3490140	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	L1_Mur3|LINE|L1	-53793.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	3.21535615344875	3.15549131496478	3.15648214369288	3.26736261113899	3.35664829512123	3.0688050033635	2.95249864519139	3.52065804460407	0.171302025469388	0.76677671136057	0.908716130899153
Merged-chr10-117885546-4	chr10	117885453	117885653	+	853.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39579.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	4.16597734327864	3.95681922013957	4.25361388944415	4.21252167781615	4.10093397465155	4.24538234963508	4.19202287320357	3.91700477733901	-0.0933363408686275	0.820715730421355	0.931351590202649
Merged-chr4-119541947-4	chr4	119541836	119542036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357177)	promoter-TSS (NM_001357177)	-400.0	NM_001357177	230700.0	Mm.259227	NM_172699	ENSMUSG00000032998	Foxj3	C330039G02Rik|Fhd6	forkhead box J3	protein-coding	6.3005307579446	6.13882006422249	6.50998080197333	6.6710985871878	6.58021768652066	6.38043278572558	6.26941374823458	6.19908446479893	-0.0896450657779241	0.714108186711658	0.885697313573214
Merged-chr10-42780926-1	chr10	42780826	42781026	+	729.5	f0_balb.idr	intron (NM_001359285, intron 1 of 19)	MLT1D|LTR|ERVL-MaLR	19430.0	NM_153055	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	3.38803760777282	3.10808321196244	3.50016715917169	3.50230868827091	3.40474130465403	3.44291328434286	3.37579145850825	3.82541563761012	0.449513160904129	0.403716625645052	0.700922982752502
Merged-chr19-34527519-4	chr19	34527410	34527610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021460)	promoter-TSS (NM_021460)	-36.0	NM_021460	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	8.35327441081797	8.37162036548183	8.41202947758154	8.40197410172983	8.28995245437454	8.03349441449422	8.34715579267439	8.13409900844119	-0.221757312566929	0.156355720370835	0.442219656874513
Merged-chr10-81378651-4	chr10	81378558	81378758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019757)	promoter-TSS (NM_019757)	-288.0	NM_019757	56371.0	Mm.24202	NM_019757	ENSMUSG00000020235	Fzr1	AW108046|Cdh1|FZR|FZR2|Fyr|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding	9.08471829053494	9.24214070641308	8.64655404310024	8.74827667034602	9.27253624656429	9.45031417346805	9.29838881559424	8.92433527293318	0.368488815309948	0.0560659507367716	0.247864446578555
Merged-chr10-95291340-4	chr10	95291245	95291445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	32364.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	6.22354204279529	6.09752706636355	6.0629741775287	6.23695384589973	6.26410528479193	6.1274368262953	6.43226156997574	5.87343262386608	0.0493498598834788	0.83861455108227	0.9387708599746
Merged-chr11-114706512-4	chr11	114706420	114706620	+	872.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 6 of 13)	intron (NM_053273, intron 6 of 13)	-20892.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	3.97121362727373	3.72233351869601	4.06722120009425	3.74471209189683	3.73656370964403	3.87927641834987	4.4029137006424	4.27562860543968	0.596865918803386	0.20172195263124	0.504156139969769
Merged-chr8-3516826-4	chr8	3516710	3516910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359123)	promoter-TSS (NM_001359123)	-53.0	NM_001359124	50767.0	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	6.46670504667186	6.31060719398904	6.23080047610064	6.51601596725156	6.29591983901723	6.34641597899787	6.49923632692009	6.54362389957523	0.0371333805865297	0.867082626210118	0.950254418867265
Merged-chr15-8443719-4	chr15	8443598	8443798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 1 of 45)	CpG	765.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	5.91516107231239	6.43788086205585	6.26933860924304	5.74338659993958	6.51403882865343	6.60768858447952	6.5116188707951	6.75332057472394	0.731667892816395	0.00414929153053271	0.041260466869487
Merged-chr6-135188342-4	chr6	135188243	135188443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040296)	promoter-TSS (NR_040296)	-137.0	NR_040296	100502888.0	Mm.437844	NR_040296	ENSMUSG00000108239	Gm19434	-	predicted gene, 19434	ncRNA	6.55747792177495	7.077490539466	7.00987143685856	6.7271351037847	6.42224763318382	6.51620219863597	6.83741193746632	7.11795541474087	-0.153868670774677	0.536759628471307	0.790687367445346
Merged-chr7-35119255-4	chr7	35119145	35119345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287523)	promoter-TSS (NM_001287523)	-48.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	8.71178690084769	8.8895764931407	8.89556927007042	8.65010553571451	8.56636798929341	8.7650560411369	8.73598917244747	8.59136315101931	-0.153889724092035	0.31574350759618	0.627633688761966
Merged-chr12-108179490-4	chr12	108179364	108179564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028262)	promoter-TSS (NM_028262)	-180.0	NM_028262	52690.0	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	9.14626124088817	9.31070262544636	9.25290852502787	9.24125474103416	9.11310858665529	9.2994584520981	9.26771242264968	9.07921745301519	-0.0594849048096526	0.67310125474583	0.865589526337487
Merged-chr5-108065625-4	chr5	108065453	108065653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253877)	promoter-TSS (NM_001253877)	-121.0	NM_001359088	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	7.14432944230269	7.25793430549769	6.74873152384913	7.17400027477467	7.2508177118836	7.3445456240531	6.99123912200732	6.80461055872768	0.0224331462708692	0.918760360903871	0.970129709668842
Merged-chr5-147751841-4	chr5	147751731	147751931	+	770.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-25843.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	3.83129844380752	3.96893341943073	4.09196443267401	3.79821905561621	4.34982504489689	4.353229350823	4.02660953014127	4.2652147461484	0.885922563664256	0.0320304407130704	0.174878786493491
Merged-chr5-24876756-4	chr5	24876678	24876878	+	938.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 9 of 15)	intron (NM_145401, intron 9 of 15)	-25791.0	NR_040684	71161.0	Mm.443533	NR_040684	ENSMUSG00000086446	Prkag2os1	4933426D04Rik	protein kinase, AMP-activated, gamma 2 non-catalytic subunit, opposite strand 1	ncRNA	4.26355533745116	4.73201889693515	5.16120674626608	4.88093185089191	4.54110944079464	4.811685660028	4.73087651669503	4.50647277488394	-0.318904809673902	0.411736807038405	0.707123186245418
Merged-chr12-100626795-4	chr12	100626683	100626883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153587, intron 3 of 17)	L1M4b|LINE|L1	98337.0	NM_001330702	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	6.7731597187552	6.97657960145992	7.07384178114866	7.30959928577699	6.82569927466218	6.8123450575426	6.86523374092731	6.72465294277281	-0.355049854992439	0.0920986698749529	0.331889997115698
Merged-chr2-102009816-4	chr2	102009693	102009893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178886, intron 4 of 5)	intron (NM_178886, intron 4 of 5)	123531.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	5.4908319227002	5.64076410140591	6.15507288751303	6.03071943174736	5.90083662235545	5.47876405739522	5.37167324620857	5.89560843637117	-0.281227232946657	0.357188285110318	0.6634042622343
Merged-chr17-51221302-4	chr17	51221215	51221415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41963.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	6.1121922175197	6.68135128525086	6.15754617356543	6.55624902306283	6.54436579982688	6.87337543810125	6.56124156206129	6.46068008866467	0.293787391233234	0.232014903164041	0.541621692185733
Merged-chr12-113014517-8	chr12	113014438	113014638	+	927.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291444)	promoter-TSS (NM_001291444)	30.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	4.29137684547941	3.78380592635062	3.83820116505584	3.3055165557418	4.07822777197699	4.21232699044375	4.27102812621688	3.66268049524885	0.60953822552541	0.24768954299627	0.558888728359504
Merged-chr7-114817713-4	chr7	114817613	114817813	+	756.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173767, intron 7 of 12)	intron (NM_173767, intron 7 of 12)	71947.0	NM_173767	233752.0	Mm.83037	NM_173767	ENSMUSG00000048782	Insc	3830422K02Rik|C730020D23	INSC spindle orientation adaptor protein	protein-coding	4.09299763326269	3.8859741706757	3.99559169998281	3.73845226304986	4.33261219818748	4.06727438865148	4.20854103582638	4.38437029464391	0.887277240640418	0.0325317573308319	0.17662988689156
Merged-chr1-144242001-4	chr1	144241895	144242095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	7109.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	5.86326024283105	6.15932724999549	5.67279869844987	5.30889995556677	5.70531498757392	5.71360318143352	5.50875343802987	5.76807013809356	-0.163020901083165	0.592608770994638	0.822268734360933
Merged-chr5-105723583-3	chr5	105723485	105723685	+	914.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	22775.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	5.45390624947295	5.59161917318218	4.77488165573963	5.30341221592258	3.39419825084548	3.74386111050485	3.74528757878815	3.60509001802933	-5.35617641572644	1.26551830787831e-13	1.61252090519668e-11
Merged-chr6-57703909-3	chr6	57703827	57704027	+	797.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133737, intron 1 of 8)	Lx8|LINE|L1	1472.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	3.66247392720237	3.56775857208172	3.85167937750594	3.82872459518063	3.38013966921486	3.28754966657514	3.64783314290933	3.55502794271319	-0.855051827618764	0.090956526938761	0.329559411095651
Merged-chr11-115047237-3	chr11	115047163	115047363	+	848.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199201, intron 1 of 3).2	B4A|SINE|B4	1032.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	3.48893091508124	3.44165205934901	3.48944314098852	3.23996997450349	3.10764490455886	3.65861093029436	2.98195840526388	3.4343933185619	-0.337774786577487	0.560596832857391	0.804563871297431
Merged-chr3-142278243-4	chr3	142278115	142278315	+	926.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190854, intron 7 of 12)	intron (NM_001190854, intron 7 of 12)	-108790.0	NM_001277216	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	4.05584079538911	3.89274242600039	4.38351833573611	4.0213910824983	6.34936452158125	6.20305514644507	5.90246903959136	6.20228706618026	3.96057865718917	3.04923582413562e-25	1.97310506114681e-22
Merged-chr2-165857717-4	chr2	165857650	165857850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	423.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	6.03058326002618	6.16399129203573	5.81007988891037	6.04388201339738	5.52782925338742	5.8328952003238	5.62726476241376	5.87655209698326	-0.499598017700817	0.0519999413487735	0.237392493617953
Merged-chr12-75726531-3	chr12	75726459	75726659	+	954.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030750, intron 1 of 2)	intron (NM_030750, intron 1 of 2)	9170.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	4.00142375006802	3.7102579516889	4.13540866613153	4.4314865665084	3.94481338586774	3.67718470102706	3.78446881087714	3.90236614029174	-0.752957381012089	0.117218739479638	0.378682551510059
Merged-chr17-79095832-4	chr17	79095756	79095956	+	882.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16D|LTR|ERVL	43950.0	NM_001316729	70536.0	Mm.293870	NM_027455	ENSMUSG00000024084	Qpct	5730422A13Rik	glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	protein-coding	4.4228631109414	4.1972986551736	4.17112454824176	4.43307870433477	4.19293608220552	3.85379211638059	4.1062473040417	4.30093229157705	-0.475122211243193	0.251552093097234	0.562880428625212
Merged-chr14-70056334-4	chr14	70056299	70056499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-21046.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	4.68600064865548	5.09734222481031	4.7670130220021	4.97530847851198	4.85403150303553	4.97873613074417	4.85542613579385	4.7244473281096	-0.0958202719049795	0.773589597188652	0.91153187499357
Merged-chr6-97487935-4	chr6	97487826	97488026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346637)	promoter-TSS (NM_001346637)	-106.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.11639326410745	7.06131886450222	7.28378442295962	7.25448616753788	7.06726866228566	7.04756594141653	7.30795406838646	7.43446732810481	0.0493721746781004	0.800239181611321	0.923003066841943
Merged-chr11-21048187-4	chr11	21048102	21048302	+	696.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43122.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	4.05559855831501	4.30351402153127	4.05620473990251	3.73525944788007	4.34545039618659	4.6411907361276	3.98884421856261	3.71887213812916	0.434547422930313	0.3696508179931	0.673855851404263
Merged-chr9-13495742-3	chr9	13495646	13495846	+	898.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64385.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	4.3274577287067	4.31534786339566	4.44617187150751	4.77199948912509	3.68667786818713	4.0147570590209	3.98477118493009	3.88856429920305	-1.58685172394457	0.000317751674258923	0.00531045936183984
Merged-chr5-93193603-4	chr5	93193503	93193703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017367, intron 2 of 6)	intron (NM_017367, intron 2 of 6)	12892.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	5.93978246431444	5.93830178681564	6.00542236117961	6.12319592481419	5.64973198270404	5.95214099763975	5.46841707875049	6.13990599067407	-0.302763548031074	0.262158772159686	0.574100843086496
Merged-chr17-88517749-4	chr17	88517643	88517843	+	969.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-12381.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	5.19641829469442	5.15194401256432	5.06237909460809	5.41569014319565	4.77767811475942	5.20364027198587	5.59819187379963	5.42671328667499	0.099286356074436	0.770234165071226	0.910083821330452
Merged-chr2-25427088-4	chr2	25426985	25427185	+	973.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013524)	TTS (NM_013524)	-1589.0	NM_007379	11305.0	Mm.2210	NM_007379	ENSMUSG00000026944	Abca2	AI413825|Abc2|D2H0S1474E|mKIAA1062	ATP-binding cassette, sub-family A (ABC1), member 2	protein-coding	4.52244211496217	5.10998700034528	4.90403799316621	4.99413410362585	5.11736214242232	5.182408703727	4.88066949886869	5.16463844490714	0.349801569081278	0.294630076668256	0.606767041413815
Merged-chr18-31920826-2	chr18	31920726	31920926	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-8923.0	NM_026006	67158.0	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	2.76689313237277	2.905150286693	2.62187567319771	2.68616826257705	2.80899560134717	3.1297545645457	2.94808576497638	3.17628036952348	1.19866922857462	0.0542996395007314	0.243349260851462
Merged-chr6-113664512-3	chr6	113664402	113664602	+	896.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	26035.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	3.19294230214695	3.2015166855642	3.05989355378815	3.53270950911082	3.66520880245186	3.5927315578519	3.24386838955053	3.25373019295467	0.631046987716656	0.279098348220505	0.591318648886395
Merged-chr9-52174793-4	chr9	52174691	52174891	+	855.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6680.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	4.60361768922548	5.4911046193099	4.75708231122852	4.05369085723287	4.91115498128493	4.56616208759613	4.26631951810537	3.93421917857523	-0.805202536473474	0.288863463858267	0.600818869479177
Merged-chr4-83269841-4	chr4	83269751	83269951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 3 of 19)	B4|SINE|B4	54338.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	7.15289561763384	6.93776581372092	7.10719859025747	7.37054118526419	7.18345388960526	7.22316865032902	7.41325490847581	7.22721231909224	0.135238845342572	0.492029243642714	0.763302174677456
Merged-chr4-53051482-2	chr4	53051382	53051582	+	909.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 34 of 49)	B3|SINE|B2	39602.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	2.62634262846825	2.902778790388	2.69925870715847	3.02625266243405	2.80959144498431	3.06443266153169	2.88597865168405	3.01107464305066	0.474329632847243	0.466194108759333	0.74629927630325
Merged-chr13-59835336-4	chr13	59835249	59835449	+	871.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12202.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	4.21135697973011	4.22670358339423	3.99586500473516	3.96683633961302	3.77799121578482	3.45437253014558	3.93101797830204	3.94547382832618	-0.863969029802964	0.0655184178508523	0.272466432823429
Merged-chr12-16830054-1	chr12	16829954	16830154	+	695.75	f0_balb.idr	Intergenic	Intergenic	19089.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	3.41651223585997	3.70546231065704	3.6983717084717	3.26348226060098	2.9160246439149	2.94423914002644	3.0468687011697	3.05526053200608	-2.22359141517749	0.000450616297693127	0.00709502910571729
Merged-chr8-70752527-4	chr8	70752411	70752611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2168.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	6.84323858880667	6.62162649776413	7.00854368181847	7.13602725176734	6.87877449552006	6.64816826674348	6.41883599668594	6.681742381117	-0.353996428704061	0.119507248604001	0.382544521554412
Merged-chr1-24695870-4	chr1	24695845	24696045	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026719, intron 3 of 15)	intron (NM_026719, intron 3 of 15)	17027.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	4.04882933946456	3.3544984816065	3.88411950953003	3.99884695290195	3.53321057305016	3.31527347258852	3.45733877567507	3.52756624193282	-1.2256860747914	0.023053301231113	0.140580906367575
Merged-chr10-89443926-4	chr10	89443824	89444024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284344)	promoter-TSS (NM_001284344)	43.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	7.28253742923586	7.44260365854488	7.22915291549136	7.4122497405592	7.39616509381697	7.36095815661652	7.51500828410029	7.17863722549298	0.0256197438970728	0.888482545911389	0.958180162421076
Merged-chr18-53265714-4	chr18	53265675	53265875	+	914.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	B1_Mur2|SINE|Alu	20113.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	3.32990718901727	3.32302342028642	3.605833378613	3.22947746688056	3.34408698419719	3.50574413563433	3.48828467542665	3.74403168107697	0.523224889557106	0.312178167045661	0.624102060221972
Merged-chr15-78406686-4	chr15	78406636	78406836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162493)	promoter-TSS (NM_001162493)	24.0	NM_001162493	246221.0	Mm.294215	NM_138670	ENSMUSG00000071711	Mpst	Mst	mercaptopyruvate sulfurtransferase	protein-coding	5.95454241416578	5.75590837531141	5.68093328918787	5.79692539321685	6.16606504177209	6.27817623217691	6.13062636892805	6.21368086155911	0.622185057137112	0.00803638865474709	0.0674156874550669
Merged-chr1-7100744-4	chr1	7100646	7100846	+	962.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183028, intron 1 of 5)	intron (NM_183028, intron 1 of 5)	11826.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	4.55852455470249	4.90593110828598	4.60461416480125	4.6620823664936	5.39865799637372	5.19265865638497	4.78780529662228	4.91683796421107	0.824645884978957	0.0177988429644939	0.118313769459256
Merged-chr11-34773745-4	chr11	34773560	34773760	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	10245.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	4.76721573263869	4.34768012813136	4.4523389348293	4.8266774151793	4.61328318522875	4.28025035997468	4.59837432104385	4.92799260367747	0.00408334791515282	0.991661933077432	0.996773303789061
Merged-chr13-37998306-3	chr13	37998210	37998410	+	763.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4102.0	NM_001360842	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	3.50081155855325	3.43780213776233	3.56022176557171	4.05232349337243	3.67553537250565	3.4893970765682	3.70730342688152	4.03377642588411	0.182618295373502	0.734617957770695	0.895082097863042
Merged-chr4-128618743-4	chr4	128618658	128618858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_205823)	promoter-TSS (NM_205823)	-139.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	4.83716908717986	4.63050121586145	5.16723317043011	4.79627623602654	5.23868939669921	4.85466611725133	4.73885922700103	5.16368058310527	0.320755412276763	0.356426017090563	0.66287574006242
Merged-chr17-5589139-4	chr17	5589024	5589224	+	960.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	96524.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	4.98636383883542	4.60723537450991	4.85517511387653	4.70329214446908	4.76600003347075	4.88104120075287	4.68569362798797	4.58177530091464	-0.110493053156209	0.747383588714617	0.900560236507876
Merged-chr3-9725569-8	chr3	9725429	9725629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	108150.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	5.8977152489351	6.05381455349051	5.96341489833261	5.71904411199737	5.8041584129286	5.60030445925881	5.89043318821028	5.4488408722374	-0.327475067633436	0.220962152209852	0.529040790359911
Merged-chr12-87441448-4	chr12	87441367	87441567	+	899.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102565, intron 1 of 5)	intron (NM_001102565, intron 1 of 5)	2372.0	NM_001102565	211064.0	Mm.486235	NM_001102565	ENSMUSG00000079036	Alkbh1	2700073G19Rik|Abh|Alkbh|alkB|hABH	alkB homolog 1, histone H2A dioxygenase	protein-coding	4.47652412349117	4.78911040603964	4.22864780942632	4.08985159147233	5.26747321297866	4.82226116221223	4.84231172311485	4.68333608525288	1.09906819537073	0.00551328357062819	0.0510511267430394
Merged-chr4-53521714-4	chr4	53521592	53521792	+	977.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133891, intron 4 of 15)	L1MB3|LINE|L1	81279.0	NM_133891	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	4.77197186725768	5.48065150925984	5.25050688077339	4.50351530473996	4.58768238883735	4.87113350209927	4.85983544703243	4.14116516190912	-0.834254437932655	0.0559389385634354	0.247555191992463
Merged-chr7-16299801-4	chr7	16299694	16299894	+	963.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9789.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	4.67110381550575	4.86698926213713	4.80270171601256	4.96803653355574	5.2114804910835	5.30561397837553	5.62248776179765	5.30789594326829	0.978156888966908	0.00204831831508034	0.023815297182147
Merged-chr4-45949306-4	chr4	45949193	45949393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198660, intron 36 of 37)	intron (NM_198660, intron 36 of 37)	-16042.0	NM_001290475	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	6.52131151456952	6.45430732007827	6.43784007577785	6.63077053505992	6.80841389745518	6.32205317945923	6.47275465865155	6.46775399453709	0.0345714107176478	0.878062668396062	0.954352985597021
Merged-chr4-123139610-4	chr4	123139516	123139716	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019489, intron 1 of 9)	intron (NM_019489, intron 1 of 9)	325.0	NM_019489	56031.0	Mm.126873	NM_019489	ENSMUSG00000028651	Ppie	2010010D16Rik|Cyp33	peptidylprolyl isomerase E (cyclophilin E)	protein-coding	5.03143555184779	5.62052486491209	4.91969829553519	4.87422101810063	5.45471087516952	5.57664126456388	5.42888781718212	4.45404916229789	0.271832505123435	0.505645672986133	0.771518828670524
Merged-chr7-90216708-4	chr7	90216601	90216801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48731.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	5.96434118267418	5.5827539555205	5.58863680396542	5.75873149094088	5.72442758122152	5.49399873603225	5.56057272315589	5.94064398348433	-0.0632408339291835	0.816742320318821	0.929518098916358
Merged-chr1-171377312-4	chr1	171377236	171377436	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122680, intron 1 of 7)	intron (NM_001122680, intron 1 of 7)	7163.0	NM_001122680	71740.0	Mm.263414	NM_027893	ENSMUSG00000006411	Nectin4	1200017F15Rik|Prr4|Pvrl4	nectin cell adhesion molecule 4	protein-coding	4.74401827498073	4.8913185239068	4.4748133310379	4.38815961787266	5.23463760247049	5.07326945552866	5.39526520635061	5.03181147238585	1.13018489271045	0.000866061589867283	0.011999817796982
Merged-chr6-146127011-4	chr6	146126848	146127048	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 55 of 56)	intron (NM_019923, intron 55 of 56)	192826.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	3.99326552512452	3.98311790852978	3.79891350169035	4.36816969718626	3.84507027552637	3.48262948134726	3.78369124701601	3.68722013342842	-1.01575910034726	0.0382318568707095	0.195960635140796
Merged-chr18-84584439-4	chr18	84584329	84584529	+	762.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 1 of 8)	intron (NM_001033341, intron 1 of 8)	5075.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	3.95626545961914	3.96452573784313	3.6858568208996	3.6835096192508	4.04262547176334	4.02920544768008	4.1200452435574	4.13636608228806	0.719827084454896	0.0928488243458451	0.333411687423716
Merged-chr2-59132455-3	chr2	59132359	59132559	+	857.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	RLTR13B4|LTR|ERVK	28224.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	3.78925832757405	4.26932644970083	3.48803294613346	3.46431028921045	3.63315050930374	4.16152951380406	4.01710025630369	4.03306130552063	0.490781152184878	0.348413377998043	0.656235052875883
Merged-chr3-108151493-4	chr3	108151410	108151610	+	943.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001305461, exon 2 of 3)	5' UTR (NM_001305461, exon 2 of 3)	3422.0	NM_001305461	229714.0	Mm.73666	NM_175470	ENSMUSG00000046793	Gpr61	-	G protein-coupled receptor 61	protein-coding	4.22106556808637	4.45608297149404	4.40101609815488	4.24262616094473	4.18490863485282	4.3481115443171	4.60682247621329	4.47920772506431	0.186982534320196	0.628355719437275	0.841497308108383
Merged-chr13-81155547-3	chr13	81155455	81155655	+	835.0888669999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 86 of 89)	intron (NM_054053, intron 86 of 89)	191481.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	3.59849565753167	3.76525013427882	3.32736664758549	3.38826191624609	4.22161218407362	4.00114626418862	4.16694345820411	4.18448241606561	1.79700605229679	9.56513351511091e-05	0.00195755215201863
Merged-chr11-116143972-2	chr11	116143872	116144072	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172571, intron 30 of 30)	intron (NM_172571, intron 30 of 30)	-5104.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	3.12566323359263	3.2696366612651	3.41069973491129	2.65932111303824	2.97819778804975	3.24125869436014	3.114513278725	3.59785532004724	0.391121329247271	0.547167765312868	0.796732576490316
Merged-chr11-43470358-3	chr11	43470256	43470456	+	775.272217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3950.0	NM_026979	69183.0	Mm.390374	NM_026979	ENSMUSG00000046491	C1qtnf2	1810033K05Rik|CTRP2	C1q and tumor necrosis factor related protein 2	protein-coding	3.79468995164248	3.91710809219745	3.84316726032931	3.83737706236287	3.61204805575907	3.44479433291943	3.87207882216519	3.39698374840564	-0.771286140954043	0.115247419008817	0.375535814673078
Merged-chr11-3539333-4	chr11	3539255	3539455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284429)	promoter-TSS (NM_001284429)	-63.0	NM_001284428	29856.0	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	7.41984379948919	7.26313445830166	7.11734603553841	7.44300393104706	7.03922721554075	6.72161872522678	7.43867657655829	7.12413837687101	-0.29174639950298	0.178046368049842	0.473836973534737
Merged-chr16-75933499-1	chr16	75933399	75933599	+	641.5	f0_balb.idr	Intergenic	Intergenic	-24233.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	3.82296344681045	3.35175557871244	3.90700041373256	3.48303989272679	3.30432946982964	3.59614896813736	3.15188250828702	3.29562689130934	-1.05023252310096	0.0607031479538494	0.260319879998014
Merged-chr7-114281854-4	chr7	114281732	114281932	+	956.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-5716.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	4.41484533743875	4.55557128527026	4.46470931555012	4.72494698381729	5.16977758606103	4.49767027940473	5.40778620736622	5.12753707864702	1.07967888646215	0.0044404604297567	0.043493536938166
Merged-chr2-168541390-4	chr2	168541198	168541398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	49067.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	5.4752115164227	5.4207671882006	5.42284940485118	5.78213474649274	4.77052681943702	4.85267170677134	5.09125816668956	5.33462672436592	-0.963276904073057	0.00266834659427551	0.0291651216122139
Merged-chr5-64923149-4	chr5	64923048	64923248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9551.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	6.56095072608225	6.63972336201987	7.0331150331155	6.69093635051486	6.10465047731168	5.95450620336267	6.06866236131648	6.09556316357887	-1.01181104668297	1.25308336355707e-05	0.00033759735327263
Merged-chr13-20092536-4	chr13	20092442	20092642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	2035.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	7.41609869866714	7.12109944279303	7.24464419272333	7.38601051152124	7.29096133927169	7.35461899511841	7.41785160653399	7.06458376155326	-0.0161565019723019	0.932158666891342	0.975507553379482
Merged-chr5-7980836-4	chr5	7980741	7980941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_054098, exon 5 of 5)	3' UTR (NM_054098, exon 5 of 5)	20369.0	NM_054098	117167.0	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	6.43558327249272	6.61819876292144	7.1102349361042	7.08892983611972	6.83829958863846	6.75770902137937	7.13898364245207	6.82019269159604	0.0579080274171153	0.810366882806428	0.92679579587174
Merged-chr6-137302749-4	chr6	137302657	137302857	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 1 of 26)	intron (NM_011216, intron 1 of 26)	50458.0	NM_001164401	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	4.2895773473059	4.6541582988509	4.67734188520111	4.83027932322474	5.11661667889017	4.58263668389126	5.27111467124208	5.41672478771001	0.977184138359116	0.0104792014328507	0.0816707630339295
Merged-chr13-9380932-4	chr13	9380841	9381041	+	921.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	104416.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	4.47654685347952	4.61086696554251	4.43185650863593	4.62163281046982	5.06160753821798	4.69569142799054	4.54269531378654	4.7172489714157	0.503499918976749	0.162627613349887	0.451998082414354
Merged-chr10-59310853-4	chr10	59310740	59310940	+	881.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12456.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	4.3166389302773	4.2238298177968	4.71584312119395	4.39721675048392	4.27546937439588	4.3984701146316	4.43007852849013	4.8420701505885	0.176745908738605	0.657234663578467	0.857136941226236
Merged-chr1-127270647-5	chr1	127270535	127270735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 2 of 17)	C-rich|Low_complexity|Low_complexity	65649.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	6.93166542172714	6.4396133815973	6.95739989654674	7.60749726306895	6.46101424218398	6.21552228129634	6.42382801843826	6.45239700332978	-0.959004771746863	0.000671250433455472	0.00977074327258222
Merged-chr17-34293726-4	chr17	34293588	34293788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5917.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	7.05559918567095	7.19119840503723	6.33256245322495	6.6647164641337	7.35317338921218	6.91589436833413	6.59405020713563	7.0978423772895	0.241846681548463	0.368968954287082	0.673345513613766
Merged-chr15-73061138-4	chr15	73061034	73061234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_180662)	promoter-TSS (NM_180662)	70.0	NM_001164641	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	8.80390637149139	8.78704279117534	8.73649311933901	8.58173026011263	8.62908532501254	8.72090171474831	8.52334977486171	8.61771141887181	-0.127404716233996	0.392437529515441	0.691933206965634
Merged-chr15-53400537-4	chr15	53400413	53400613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-54330.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	7.17471119985341	6.76584119246614	7.22913728909135	7.29585327361419	6.9952416527725	6.8205397857535	7.10701100928087	6.62073880006168	-0.323191211552438	0.145408457105811	0.424895462389035
Merged-chr17-34264869-7	chr17	34264813	34265013	+	948.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_207105, exon 2 of 6)	exon (NM_207105, exon 2 of 6)	1686.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	5.01250096805797	5.05351910857812	4.85262219164225	4.26494334820961	4.46486650985778	4.53836716028574	4.43359912576707	4.88309521498847	-0.491121425400404	0.228284858756112	0.537124420249944
Merged-chr1-78674848-4	chr1	78674749	78674949	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028817, intron 2 of 15)	intron (NM_028817, intron 2 of 15)	16409.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	4.02189314954828	4.43469882924076	4.70924965963293	4.77990881242245	4.31192311961262	4.14748117977337	4.3053184566597	4.36590689538192	-0.572391543076551	0.172487434435291	0.465974005452768
Merged-chr16-3929348-4	chr16	3929254	3929454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029738, intron 8 of 11)	intron (NM_029738, intron 8 of 11)	20345.0	NM_029738	76779.0	Mm.458921	NM_029738	ENSMUSG00000014232	Cluap1	2310030D15Rik|2610111M03Rik	clusterin associated protein 1	protein-coding	6.54691515382101	6.32321646170425	6.4520121882271	6.58491150332257	6.08436797075727	6.17443013897145	6.38543352488192	6.28801176201686	-0.380090488278456	0.0900340598656344	0.327651431421647
Merged-chr13-75845403-4	chr13	75845323	75845523	+	883.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053108, intron 1 of 2)	intron (NM_053108, intron 1 of 2)	5537.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	4.6108420174745	4.23816510412809	4.25974590365353	4.38434568687391	4.59978296088119	3.89691708898462	4.28473173987649	3.95449556696016	-0.357728503241387	0.422826648619034	0.714924316998129
Merged-chr17-23925317-3	chr17	23925232	23925432	+	988.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7874.0	NM_001077633	620253.0	Mm.390964	NM_001077633	ENSMUSG00000057417	Dcpp3	Dcpp-3|EG620253|SPT-3	demilune cell and parotid protein 3	protein-coding	4.59460839244736	4.36036938945817	4.63183792944897	4.34751469453003	4.38005016478659	4.2310753310403	4.5363586646831	4.34842986241789	-0.228262916622411	0.547094728049552	0.796695015197509
Merged-chr11-101581437-7	chr11	101581311	101581511	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144830)	promoter-TSS (NM_144830)	-831.0	NM_001359326	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	4.76983145525227	4.4594202472176	4.77064242458139	4.43343766582029	4.40928558786961	4.20823448665359	4.06496083505465	4.76736255922561	-0.49258523058604	0.230111960322613	0.539284183583671
Merged-chr3-87360586-4	chr3	87360474	87360674	+	951.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 1 of 5)	intron (NM_009690, intron 1 of 5)	2693.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	4.82126457349167	4.82873350280624	4.77829490483796	5.24991862697293	5.52644298074741	5.04719118510134	5.48102716114183	6.06527339310573	1.12822189497044	0.00197118449172404	0.0231606043143653
Merged-chr19-29419623-4	chr19	29419517	29419717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 1 of 5)	L1MB7|LINE|L1	8698.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	6.94738074310526	6.90676254843865	6.67548885735528	6.82071096149989	6.75871180669971	6.54394584113081	6.62629176774943	6.67074518660195	-0.260574970537575	0.197391158898467	0.498787070539606
Merged-chr2-27595459-4	chr2	27595359	27595559	+	857.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80312.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	3.52992661256097	3.79864180651315	3.81614214128457	3.48615842881691	4.14989099289656	3.98888119790574	3.63818860818115	4.13039415764822	0.97447430217299	0.038495996820158	0.196830388408558
Merged-chr8-124922207-4	chr8	124922137	124922337	+	920.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053207, intron 1 of 4)	intron (NM_053207, intron 1 of 4)	24351.0	NM_001111141	244666.0	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	4.76652072195138	4.49087711189108	4.42776792192927	4.42146920504301	4.69525144298634	4.41922955339416	4.4078946649548	4.23950805876374	-0.144455642759987	0.706391740721664	0.882026349021226
Merged-chr10-14537311-2	chr10	14537205	14537405	+	793.25	f0_balb.idr|f0_c57.idr	intron (NM_001002268, intron 1 of 24)	RLTR40|LTR|ERVK	7731.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	4.08872298463841	4.61442687728305	3.52772528263092	4.16834265562007	3.9554950151211	3.84322783380733	4.15844900168936	3.72007262472724	-0.597372739013463	0.249952065215209	0.561063722054524
Merged-chr2-79056285-4	chr2	79056184	79056384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	186606.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	6.27240008337761	6.05801083056057	5.92488374002168	6.4856005449366	5.98219116728508	6.16990969928452	5.94084296854205	5.94405288484775	-0.327101277217043	0.199990596833974	0.501890868104413
Merged-chr6-29828992-4	chr6	29828915	29829115	+	759.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	-24726.0	NM_001347084	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	3.83534657094343	4.0532704815083	3.72645262236966	3.87922904922169	3.97727662164035	4.00825299051442	3.87134062314157	4.02794963052192	0.250743786515668	0.561229230305233	0.804894831534649
Merged-chr12-32132075-4	chr12	32131986	32132186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70807.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	6.15857676895418	5.90356808201525	5.83055702496793	6.22230792926175	5.91060959869411	5.82149494107406	6.1659300538985	6.31781533755038	0.0244136922433477	0.925229775229427	0.97241738811813
Merged-chr9-44396897-4	chr9	44396800	44397000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293630)	promoter-TSS (NM_001293630)	-27.0	NM_001293631	14385.0	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	8.94592124142669	9.06497355239279	8.6916626822899	8.73392445237867	8.87294476373151	9.09624607213109	8.99097390478201	8.44210353132918	0.00747570301981746	0.968339496696034	0.988694268692349
Merged-chr4-101355166-4	chr4	101355087	101355287	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040640, intron 1 of 3)	intron (NR_040640, intron 1 of 3)	1061.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	4.54432248107526	4.63484656888663	4.12897223822526	4.31627854933908	4.60262955871005	4.67708605292487	4.11229264020091	4.75914947224203	0.322236975446282	0.425660998454514	0.717115365893346
Merged-chr2-150648122-4	chr2	150648024	150648224	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080575, intron 2 of 13)	B3A|SINE|B2	-19370.0	NR_040331	109344.0	Mm.440012	NR_040331	ENSMUSG00000087406	E130215H24Rik	-	RIKEN cDNA E130215H24 gene	ncRNA	5.02728387445912	4.83419628692952	5.25080469917226	5.71970607110347	4.78153726428557	4.93864142906535	5.16529099250915	4.98951550114639	-0.571703491019813	0.11709343815765	0.378552656339346
Merged-chr12-112866675-4	chr12	112866571	112866771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5755.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	6.91810492122346	7.52217254026117	6.86670439106983	5.71448749401176	7.11682668690387	7.13439523748784	6.65984154093751	6.52530717346877	-0.0381280273008647	0.941845283190628	0.97898049638905
Merged-chr14-51255022-3	chr14	51254901	51255101	+	916.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053113)	TTS (NM_053113)	1111.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	3.55568832493692	3.80369346872571	4.2102508586211	3.93640508321565	3.44627026077001	3.84730169906676	3.48187482866516	3.82755859257647	-0.713275406308651	0.16048964079139	0.448666279481968
Merged-chr1-171114074-4	chr1	171113987	171114187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7574.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	7.11720090248394	6.54243007735575	6.81114014614361	6.78522572475236	7.01328558509697	6.8864305047198	6.83082209548934	6.45520333375468	-0.00940064014960497	0.967629152943811	0.988556045979739
Merged-chr2-51089518-4	chr2	51089470	51089670	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59541.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	4.9758316225578	5.81591850481562	5.85156050063269	5.89216630387891	5.66291491153415	5.67777519508863	5.55699025832942	5.60787041561272	-0.113219989187597	0.718053481432631	0.887335796877561
Merged-chr15-33359243-2	chr15	33359143	33359343	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176073, intron 4 of 7)	Lx6|LINE|L1	46696.0	NR_033608	73486.0	Mm.483393	NM_028551	ENSMUSG00000058101	1700084J12Rik	-	ribosomal protein L7-like 1 pseudogene	pseudo	3.13298882912054	3.0756078216173	3.24439499420827	3.31576336917366	2.93941976451649	3.18361103578041	2.87011378448618	3.0725425343152	-0.748792369492874	0.201163287357708	0.503396204149708
Merged-chr16-91010106-3	chr16	91009975	91010175	+	793.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164483, exon 2 of 32)	exon (NM_001164483, exon 2 of 32)	1020.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	3.3350621182794	2.98527443974694	3.75603848774822	3.18732466748661	3.7732992137317	3.51286054568382	3.38314366569164	3.7080466630646	0.871507986675217	0.129764186977959	0.400958719608618
Merged-chr1-59904191-3	chr1	59904088	59904288	+	986.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8818.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	3.6229614358406	3.49407419641765	3.91802931415426	4.13033672880275	3.5371229341755	3.56174511591481	3.76320144690348	3.50638019126581	-0.715345934312149	0.164320574745426	0.454467445982463
Merged-chr4-62275037-4	chr4	62274924	62275124	+	861.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-11405.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	4.02682173893007	4.00144137791636	4.29755582853787	4.01752340025676	4.23786693844413	4.09866744777116	4.23726491981251	4.16721170910875	0.272175891674833	0.499559279225202	0.768387448003553
Merged-chr7-107045978-1	chr7	107045878	107046078	+	550.0	f1_balb.idr	Intergenic	Intergenic	9842.0	NM_147034	259036.0	Mm.377801	NM_147034	ENSMUSG00000073898	Olfr713	MOR263-1|P3	olfactory receptor 713	protein-coding	3.26725436798941	2.99390113414002	3.09539441897154	3.10492612496893	2.91909801159179	3.32555413573858	3.20010919725329	3.15376286879931	0.135711377241352	0.812148835633772	0.927419976441895
Merged-chr12-8974004-4	chr12	8973981	8974181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159527)	promoter-TSS (NM_001159527)	80.0	NM_172470	74682.0	Mm.87389	NM_172470	ENSMUSG00000066643	Wdr35	4930459M12Rik|4931430C06|mKIAA1336	WD repeat domain 35	protein-coding	6.08116165404702	6.36475543741933	6.72118826360803	6.21935104955912	6.11047314428964	6.16965080969746	6.50369469755568	6.05580848118464	-0.214627221363182	0.403642564149759	0.700922982752502
Merged-chr8-117209321-4	chr8	117209218	117209418	+	988.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47701.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	5.03498750229743	4.87843210973433	5.03581748574154	5.15610334416388	5.352505626963	5.48914872364147	5.40032177488894	5.03246095884048	0.540207068190029	0.0784990442824849	0.303220863572603
Merged-chr3-27183871-5	chr3	27183735	27183935	+	996.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	831.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	5.11740946300312	4.79680310267228	4.78419138401864	4.44487241375909	4.64294318115466	4.75664056298698	4.83498549919859	5.25313911579201	0.196157827007527	0.60173240813896	0.827201131888227
Merged-chr2-166116157-3	chr2	166116058	166116258	+	732.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 3 of 20)	intron (NM_001252579, intron 3 of 20)	39127.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	3.04719554774346	2.89648024503087	3.04753099099062	2.92434672634692	3.71240695673648	3.47084330399716	3.44399408951008	3.40581013753131	2.05094909725406	0.000170115037223449	0.00317894939210498
Merged-chr7-67480379-2	chr7	67480279	67480479	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-107521.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	2.96900421061809	3.13326643284909	2.96935607054008	2.80447224376955	2.77470736343475	3.48294851718892	3.14137782681226	3.15236972959955	0.746032890792158	0.228297038962855	0.537135323317921
Merged-chr7-143119411-4	chr7	143119262	143119462	+	901.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008434, intron 1 of 15)	intron (NM_008434, intron 1 of 15)	12108.0	NM_008434	16535.0	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	4.46524365473269	4.19915572681304	3.78082436962383	4.06587721758215	3.92685048359308	4.07355714000298	3.88039243605007	4.3904487663688	-0.171653206926355	0.706958085522174	0.882312931718287
Merged-chr11-114907792-4	chr11	114907687	114907887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17746.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	7.98379970352391	7.88302446487484	7.80521473367294	7.86821473123194	7.9003106218273	7.84360529228692	7.84232186542911	7.86771313736873	-0.0264155287795238	0.866952549898353	0.95017995041061
Merged-chr10-8858401-4	chr10	8858300	8858500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	27670.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.81657673230824	5.45661729356731	5.60028293132717	5.9222716775804	5.47541097459124	5.4832163635297	5.37417493060651	5.69750082387418	-0.360890454963452	0.199484078843185	0.501450672693145
Merged-chr11-21092900-3	chr11	21092796	21092996	+	828.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023324, intron 1 of 6)	intron (NM_023324, intron 1 of 6)	1572.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	3.03443860410217	3.08491030079701	3.03480852795271	3.09360657267033	3.1312602855583	3.26171393636122	3.02411032836414	2.76539617242153	-0.0189018772052422	0.974637667416842	0.990954254989692
Merged-chr8-70614625-4	chr8	70614517	70614717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2227.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	6.42546268280242	5.95093116680752	6.28545228748983	6.72471490789776	6.1689291646312	5.91425117992958	6.34282415696898	6.438560256769	-0.239651775512749	0.377854124334431	0.680558922477594
Merged-chr1-171817163-4	chr1	171817065	171817265	+	969.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22532.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	5.14978836325931	5.38847636051191	5.72251757405373	5.47097346471802	5.30107681724475	5.06612523041839	5.50610158416178	5.1123193213686	-0.335089293993312	0.276420238468117	0.588482268167796
Merged-chr9-107526787-3	chr9	107526667	107526867	+	972.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020263, exon 36 of 39)	exon (NM_020263, exon 36 of 39)	-7178.0	NM_019704	56395.0	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	4.26534097592788	4.23432042542897	4.06306835010929	4.02823300708435	3.69549610965775	3.70801659357551	3.5127782934781	3.70811455011824	-1.42500083022988	0.0022341197207662	0.025455804002628
Merged-chr8-128358743-12	chr8	128358687	128358887	+	853.272217	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008737)	promoter-TSS (NM_008737)	-286.0	NM_001358959	18186.0	Mm.271745	NM_008737	ENSMUSG00000025810	Nrp1	C530029I03|NP-1|NPN-1|Npn1|Nrp	neuropilin 1	protein-coding	4.06155897974574	4.11269656554237	4.48911211291131	4.10551673190984	4.08639532511994	4.08067267637226	4.04515482887388	4.55633115625159	0.0265818291401371	0.950448467930743	0.982264362614525
Merged-chr18-69571210-4	chr18	69571136	69571336	+	900.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	225076.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	4.42406801869693	4.38183684823313	4.03504347230631	4.25563965318976	4.82615213923682	4.59674370917198	4.44555823709534	4.28917982748636	0.651023003410027	0.0972478345144408	0.341688658763981
Merged-chr6-57823229-4	chr6	57823138	57823338	+	996.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	1887.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	5.13107925422626	5.20861895640483	5.02606087511742	4.95570634209321	5.75376865825044	5.49550615459628	5.38136286566446	5.43193083234236	0.841671535586873	0.00392321538442819	0.0394644640825628
Merged-chr6-57770635-4	chr6	57770524	57770724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	54501.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	6.32610141807319	5.80143703967856	6.13040162382648	6.43007072979602	5.96800117195069	5.57107390059246	5.93434807208898	5.54661701502531	-0.667470966580253	0.0174679908924731	0.116801702558511
Merged-chr11-71159967-3	chr11	71159866	71160066	+	935.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040696, intron 12 of 14)	intron (NM_001040696, intron 12 of 14)	-15262.0	NM_001004142	195046.0	Mm.240227	NM_001004142	ENSMUSG00000069830	Nlrp1a	CARD7|DEFCAP|Gm14|Gm15|NAC|Nalp1|Nalp1a|Nlrp1|PP1044	NLR family, pyrin domain containing 1A	protein-coding	4.91834562084032	4.58035189553904	4.28737833167243	4.30841230456392	4.34534286645791	4.10694379682716	3.71820603766548	4.32943718084793	-0.932484778636656	0.0428623150616513	0.210551878797328
Merged-chr9-27109672-4	chr9	27109565	27109765	+	977.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023277, intron 1 of 8)	intron (NM_023277, intron 1 of 8)	45756.0	NM_023277	83964.0	Mm.28770	NM_023277	ENSMUSG00000031990	Jam3	1110002N23Rik|JAM-3|JAM-C|Jcam3	junction adhesion molecule 3	protein-coding	5.51343174989492	5.40705599135641	5.59603356280552	5.90424993267689	5.81260386715708	5.22773422819354	5.66838314165711	5.61815239306477	-0.0445480529990111	0.881421309069916	0.955384724180766
Merged-chr19-34284584-2	chr19	34284488	34284688	+	687.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-6071.0	NM_007987	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	3.67683053151138	3.16494969003946	3.51250710797964	3.40250760130742	3.87790985541392	3.63004816571069	3.89406925017973	3.77431733639424	1.10953002733711	0.0253815761222555	0.150098038072202
Merged-chr16-38902319-4	chr16	38902241	38902441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170599)	promoter-TSS (NM_170599)	-4.0	NM_170599	207683.0	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding	6.84068533669693	6.83612372901194	7.35841622481324	6.97332088638845	6.69581591021631	6.85639148900474	6.97533657011614	6.7206222859696	-0.2843270901687	0.190964281718924	0.490311892807621
Merged-chr15-58791510-6	chr15	58791429	58791629	+	842.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175212, intron 3 of 6)	intron (NM_175212, intron 3 of 6)	31898.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	3.86615857265084	3.30469898051653	3.30096213129227	3.38702287804202	3.34178588197522	3.59845387191634	3.41100792794527	3.73336919179854	0.149378544415919	0.781290614154667	0.914858982946737
Merged-chr4-97924059-4	chr4	97923956	97924156	+	986.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	146430.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	5.15183782584895	4.75838747180365	5.41797255554125	5.16805085718277	5.51264192620604	5.1910564849447	5.28042960385741	5.14918410718763	0.2919737569881	0.362448501913957	0.667648124413267
Merged-chr4-128724362-4	chr4	128724279	128724479	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 9 of 14)	intron (NM_018774, intron 9 of 14)	-3192.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	5.74802953100166	5.4301773274587	6.05645782639073	6.399566074084	5.50896754620613	5.26688808874646	5.94529379647229	5.84061647441029	-0.496576018985029	0.13609095646271	0.410493185441953
Merged-chr8-70538856-4	chr8	70538751	70538951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007924)	promoter-TSS (NM_007924)	-824.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	7.67457390380325	8.02257565551748	7.63152137939076	7.50673054382985	8.2189984015103	8.37363420361961	8.22406640389681	7.97119419334275	0.626050982043567	0.000970878749697448	0.0131205958847
Merged-chr5-28321911-4	chr5	28321820	28322020	+	875.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028234, intron 1 of 18)	intron (NM_028234, intron 1 of 18)	4731.0	NM_028234	381626.0	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	4.3386505635001	4.26577298697582	4.33933696741103	4.08029571230548	4.04857451471229	4.01241312694557	4.43921888781694	4.60223510807033	0.111490416424068	0.790527060074683	0.918840742585233
Merged-chr9-116083734-4	chr9	116083631	116083831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91632.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.89828552229233	6.32651627389059	6.25383644714144	6.04391511749056	6.29732470920562	5.89776367872677	6.20357583042567	5.82086983689107	-0.0882346709050485	0.732494582673473	0.893963778565797
Merged-chr13-54593829-1	chr13	54593729	54593929	+	565.0	f0_balb.idr	3' UTR (NM_001347512, exon 6 of 6)	3' UTR (NM_001347512, exon 6 of 6)	3598.0	NM_025933	67044.0	Mm.29353	NM_025933	ENSMUSG00000025868	Higd2a	2010110M21Rik|AA690237	HIG1 domain family, member 2A	protein-coding	3.47177624971299	3.87563192631038	3.58253981617182	3.61268159236658	3.76727976364609	3.18329598003166	3.61931955844447	3.35016603551663	-0.433041469819766	0.42867652708485	0.71961368508163
Merged-chr9-106203142-4	chr9	106203034	106203234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011876)	promoter-TSS (NM_011876)	26.0	NM_011876	23999.0	Mm.274346	NM_011876	ENSMUSG00000023277	Twf2	A6-related|AU014993|Ptk9l|Ptk9r	twinfilin actin binding protein 2	protein-coding	7.37450184714252	7.07131831408843	6.81227549756346	7.20388857947623	6.96338674347527	7.3473602913183	7.15682443021589	6.86532345707677	-0.0588375763580898	0.786222797824709	0.916858200191613
Merged-chr11-59542579-4	chr11	59542463	59542663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145827)	promoter-TSS (NM_145827)	-123.0	NM_145827	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	7.98716519570807	7.96307526178992	8.29474880330496	7.82642650017267	7.77935131753053	8.01430622757144	7.82911584086615	8.10612773834473	-0.112442435942926	0.542024279949154	0.793630226945485
Merged-chr12-80918058-4	chr12	80917956	80918156	+	874.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6391.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	4.21663369915459	4.14900271148867	3.76626011184005	4.07929551362479	3.9135856523534	4.20825309123696	4.31753289875244	3.93226904087535	0.0883455948272046	0.839633115361915	0.93897785072825
Merged-chr7-88203034-3	chr7	88202937	88203137	+	724.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-75048.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	3.44363189896159	3.21848773855009	3.54653677928328	3.53614395917147	3.08320510128584	3.18747605750909	3.43017389700663	3.49431559883313	-0.496960214512843	0.36639610745212	0.670851034632856
Merged-chr9-83925073-4	chr9	83924918	83925118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305935)	promoter-TSS (NM_001305935)	-119.0	NM_001305935	12040.0	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	7.34713067110037	7.05633015675053	7.38790141876686	7.51212408809535	7.2855961713152	7.3989770053229	7.56439990874967	6.71985317908356	-0.0826744922426685	0.721893782410371	0.889006341600854
Merged-chr3-84314740-4	chr3	84314638	84314838	+	973.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9963.0	NM_001271726	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	5.31178693979196	5.23864506441177	4.83475146486181	5.7007063875861	4.76841575816075	4.97342911793639	5.16768598512474	5.25079285342162	-0.521808780821417	0.141738261869256	0.41884783250682
Merged-chr15-28420917-4	chr15	28420799	28420999	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 66 of 78)	intron (NM_133365, intron 66 of 78)	217133.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	3.98668497958362	4.71735620078897	4.80082983046373	4.4837352217938	4.13372341718422	4.52356606646717	4.41593471625418	4.34613143418144	-0.405322956453825	0.337185705420158	0.647002057584619
Merged-chr17-32268865-4	chr17	32268767	32268967	+	975.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286630, intron 1 of 19)	intron (NM_001286630, intron 1 of 19)	15256.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	4.91991132011425	4.90050938618773	4.88652372446707	4.86646603134605	4.88101146642768	4.75051876223886	4.75552839589144	4.57092220968747	-0.28676621234875	0.384545830673107	0.686058353293141
Merged-chr11-20112446-4	chr11	20112358	20112558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146243, intron 1 of 8)	CpG	493.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	7.3876934440341	7.40242055559835	7.16955196096893	7.4412588936649	7.66700235804403	7.68133259372334	7.49440709816103	7.56175379458563	0.32344140803148	0.0663176081339567	0.274490959432861
Merged-chr10-59220923-3	chr10	59220779	59220979	+	802.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024910, intron 1 of 9)	intron (NM_001024910, intron 1 of 9)	968.0	NM_001024911	103080.0	Mm.346842	NM_001024910	ENSMUSG00000019917	Sept10	4921515A04Rik|9430099J10Rik|AA408298|AI874685	septin 10	protein-coding	2.85237366510568	2.83823376697945	2.92351695055057	2.91112244492194	3.18373125601212	3.55111756907638	3.10433614054921	3.28247838090366	1.59687564300151	0.00622509398214691	0.0557633985093424
Merged-chr3-21988304-4	chr3	21988117	21988317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88435.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.49499491245346	4.72948541064014	5.83789942723398	5.90636382619093	4.89076791871192	5.2055796752871	5.24017752989102	5.16498119084705	-0.800219343502418	0.0322955091494767	0.17592117898145
Merged-chr17-87972210-4	chr17	87972098	87972298	+	995.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-2852.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	5.51556129000089	5.48557014774165	5.41181792285647	3.65192424480038	5.63315304543567	5.31804496842829	4.97187573612984	5.43488597957432	0.204877382362854	0.780949342265134	0.914744491065857
Merged-chr2-90631025-4	chr2	90630930	90631130	+	871.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46185.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	4.66479004573799	4.73985246723725	4.46044474714491	4.7561511971936	4.69378826342554	4.59083567106439	4.64369005340204	4.36570298356825	-0.183623846128326	0.607328404896744	0.82995485412866
Merged-chr11-79286533-4	chr11	79286422	79286622	+	834.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31827.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	3.36539690020415	3.46726477132299	3.30881650129163	3.10793942922027	3.38955458875655	3.29864716114678	3.1760627028627	3.56928054566878	0.20394635672591	0.705888788308531	0.881859110549825
Merged-chr4-155197863-4	chr4	155197763	155197963	+	835.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	24672.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	4.59730852540794	4.51172957517261	4.86290441230508	4.95720185577911	4.32801737295123	5.19171851033333	4.57685645514712	4.63637417932979	-0.0812321063519012	0.838846363311545	0.938853173799904
Merged-chr16-43841512-3	chr16	43841414	43841614	+	859.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48162.0	NM_029128	106248.0	Mm.275354	NM_029128	ENSMUSG00000022704	Qtrt2	3110012M05Rik|4930470H18Rik|AI648807|Qrtr2|Qtrtd1	queuine tRNA-ribosyltransferase accessory subunit 2	protein-coding	3.67119786329508	3.83803407730158	3.77633813421095	3.98008083756823	3.87476124796439	3.61165666498538	3.71029897191539	3.61412990566015	-0.346973898808559	0.460446903664667	0.742687499720882
Merged-chr9-58275318-4	chr9	58275219	58275419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22155.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	8.56573662429923	8.75018825418264	8.39829730016254	8.27814788735337	8.54940776431592	8.59179785038182	8.41121082773063	8.41390873285772	-0.0150532393501608	0.92978102957302	0.974681648070368
Merged-chr3-22077443-4	chr3	22077336	22077536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	784.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	6.66167108231798	6.54403089231483	6.60207976225572	6.51147475656296	6.49014652099679	6.73064149535268	6.08303982862978	6.87517478045409	-0.00318362081480713	0.989489485061629	0.995756769410891
Merged-chr9-104281148-4	chr9	104281044	104281244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18214.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	7.31495782618365	7.31510466516845	7.17504119930715	7.41698096208274	7.29796385285398	7.04185654108197	7.28996207905645	7.37124010059522	-0.0758171612507909	0.682167674407974	0.869682098720609
Merged-chr16-44130671-4	chr16	44130575	44130775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	8584.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	5.89070985280199	6.15778354827993	6.23978300312227	6.71734224544415	6.22645022857822	5.6687868415771	6.10939753442253	6.63802936348351	-0.140789868101218	0.649023848640742	0.852515405735303
Merged-chr10-34207805-4	chr10	34207696	34207896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172508)	promoter-TSS (NM_172508)	-245.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	4.91689746447508	5.19291422574456	4.69716261095171	3.81277690351435	5.06551293799468	5.05749638211468	4.85930984948041	4.3275115164056	0.209967370841731	0.659987066553244	0.858674430353202
Merged-chr5-99374649-4	chr5	99374538	99374738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-121711.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.3855563430417	5.51681277732203	5.50749487350332	5.22433103419819	5.83352779548773	5.6555731401378	6.11788870772089	5.91818373293514	0.825803235534068	0.00222623034824838	0.0253984372428227
Merged-chr12-51704141-4	chr12	51704055	51704255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-12241.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	6.30152077021841	6.03888226590047	6.33990316486091	6.75905416604659	6.84253824315642	6.20822181382598	6.3255521177302	6.25975285809524	0.0689723835266921	0.804414503253853	0.924756680030242
Merged-chr7-88097922-4	chr7	88097819	88098019	+	977.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081414, intron 9 of 9)	intron (NM_001081414, intron 9 of 9)	-180166.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	5.00715892372809	5.16429357030628	4.65113045623807	5.16883120569012	5.07026525978749	5.37158825166779	5.01769789878544	4.93344557546951	0.148316083951103	0.656027119694834	0.856430271691361
Merged-chr11-80154031-4	chr11	80153941	80154141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172133)	promoter-TSS (NM_172133)	-121.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	7.70663491879765	7.58778285598456	7.29288068552974	7.43871405366992	7.67843217176514	7.5750171221158	7.47590710303562	7.32016980961041	0.0141492249281302	0.940450270603693	0.978605877642248
Merged-chr9-124126596-4	chr9	124126512	124126712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009917, exon 2 of 2)	3' UTR (NM_009917, exon 2 of 2)	5069.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	5.54585066503906	5.16134195458684	5.35129921174062	5.542609813789	5.47162878304851	5.36760166882406	5.38337016108194	5.56849157921578	0.0590896521672082	0.835584988103915	0.937473068238396
Merged-chr6-125436861-4	chr6	125436742	125436942	+	670.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-56338.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	3.29160842159046	3.13403999364084	4.00309797008186	3.57075674664484	3.60433769317078	3.59762273053555	3.72843843403422	3.64345370790499	0.318637386829132	0.568955078917668	0.809160094353148
Merged-chr17-27754263-3	chr17	27754159	27754359	+	807.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271511, intron 3 of 3)	intron (NM_001271511, intron 3 of 3)	-23256.0	NM_001357728	30051.0	Mm.26768	NM_013891	ENSMUSG00000024215	Spdef	PDEF|Pse	SAM pointed domain containing ets transcription factor	protein-coding	3.29401929307449	3.32476584879621	3.40502726605095	3.74850022137814	3.2254381072076	3.21838448400619	2.96121035485909	3.34911453891302	-0.995351319643372	0.0870138596104719	0.321708480389135
Merged-chr7-16294980-4	chr7	16294882	16295082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8187.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	7.51629682679808	7.88608518192538	7.64450402106422	7.84600036090802	7.80852013707072	7.90521397575792	7.65765621351515	7.73865469808431	0.0526890376968226	0.766874553048839	0.908757742622047
Merged-chr13-9191382-4	chr13	9191272	9191472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85153.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	6.65751676082979	6.41425447706575	6.8017862102332	6.96832416293751	6.40057088254069	6.78867344606465	6.41140633987771	6.69858715460161	-0.22716931589877	0.33411715214371	0.644805241742718
Merged-chr18-36287612-4	chr18	36287502	36287702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008989, exon 2 of 2)	exon (NM_008989, exon 2 of 2)	6440.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	5.71961965355239	5.79457898574286	5.41338146381861	5.66850109571706	5.64293593479772	5.65267728337975	5.53428983259856	6.21979318687716	0.215088638896858	0.45953570070812	0.742043821250074
Merged-chr7-88047560-3	chr7	88047465	88047665	+	672.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081414, intron 8 of 9)	intron (NM_001081414, intron 8 of 9)	-230520.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	3.05416178259927	3.12962607287242	3.45054546685381	3.23756239346249	3.26681754053561	3.22823945077149	3.22745350108446	3.34795297226657	0.158822126361471	0.770351033448347	0.910151645456233
Merged-chr19-46045207-4	chr19	46045079	46045279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001113408, exon 1 of 11)	5' UTR (NM_001113408, exon 1 of 11)	132.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	6.36304793176402	6.46532677879018	6.64491309461833	6.48957945986965	6.53432276426939	6.54053338085829	6.56614199172898	6.46588782920504	0.0494599451007936	0.812500104002829	0.927620601323096
Merged-chr13-35079792-4	chr13	35079677	35079877	+	947.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85633.0	NM_001110331	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	5.55633739816414	5.84715119847539	4.80610678855587	4.46877857194132	5.54951328249991	5.49888258184911	4.65110605924391	4.52229308916959	-0.297207873919262	0.686542888799739	0.871787672169905
Merged-chr7-142894803-3	chr7	142894697	142894897	+	698.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009377, intron 9 of 12)	intron (NM_009377, intron 9 of 12)	5169.0	NM_009377	21823.0	Mm.1292	NM_009377	ENSMUSG00000000214	Th	-	tyrosine hydroxylase	protein-coding	3.14701429202357	3.1937495717054	3.20613300269898	3.35959271742289	3.39717961114296	3.25690211951078	3.01220198498677	3.02002489622431	-0.174337932537047	0.760923087682766	0.906431126096988
Merged-chr18-74780066-4	chr18	74779934	74780134	+	963.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177470, intron 1 of 9)	intron (NM_177470, intron 1 of 9)	822.0	NM_177470	52538.0	Mm.245724	NM_177470	ENSMUSG00000036880	Acaa2	0610011L04Rik|AI255831|AI265397|D18Ertd240e	acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	protein-coding	4.36757598106222	4.61241620036129	4.07645619678078	4.28813975194613	4.28839955157739	4.62357632480154	4.21229013498903	4.60293542174966	0.206326115794631	0.607209639621557	0.829834769802161
Merged-chr4-53149071-4	chr4	53148967	53149167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	10828.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	6.25256262436394	6.24105449423212	6.72622498199342	6.27117548706351	6.42981642376769	6.19425774861847	6.421359687736	6.74825400168285	0.122791498430275	0.617632774830619	0.835645674307982
Merged-chr12-69401207-4	chr12	69401103	69401303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29053.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	7.25081868290765	7.27622332568007	7.1775876425846	7.44632896708857	6.70300730656513	6.49566225623017	7.06259925638683	6.94480021164114	-0.6622160426416	0.00163490285771911	0.0200052863176188
Merged-chr7-100159249-2	chr7	100159156	100159356	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_026010)	promoter-TSS (NM_026010)	-21.0	NM_026010	67164.0	Mm.46777	NM_026010	ENSMUSG00000030725	Lipt2	2610209A20Rik	lipoyl(octanoyl) transferase 2 (putative)	protein-coding	5.02783526155477	4.89219142971428	4.68036725824028	4.75626098258501	5.08965318857418	5.41714956464298	5.03733086290021	5.27081560751593	0.709703241991703	0.0253829090641214	0.150098038072202
Merged-chr10-81627696-4	chr10	81627574	81627774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027480)	promoter-TSS (NM_027480)	-66.0	NM_181586	50721.0	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	6.3016800637942	6.40427737636342	6.39476605173334	6.62276443421158	6.30752422433094	6.47904129273218	6.55799405722421	6.44237654531967	-0.0111356506261132	0.959905009521062	0.985662310124408
Merged-chr19-32681099-4	chr19	32680999	32681199	+	889.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026487, intron 8 of 9)	intron (NM_026487, intron 8 of 9)	31199.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	4.42212842630647	4.7695928986564	4.33283127621197	4.19889537570402	4.72525324230637	4.59635832021126	4.52576379600375	4.23369900968421	0.220697855545872	0.579442034428303	0.815384290230806
Merged-chr1-105997484-4	chr1	105997387	105997587	+	989.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	7081.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	4.7759656953328	5.14535471215537	4.34103789185864	4.70093203497335	5.04688600281567	4.91247311492495	4.51265090429954	4.53013438373302	0.0120328355984564	0.975696848889083	0.991347073148764
Merged-chr11-85713686-4	chr11	85713599	85713799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045875, intron 1 of 5)	intron (NR_045875, intron 1 of 5)	6045.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	7.66109713590628	7.35429968060039	7.81181780779362	7.93730270085187	7.48333725222946	7.67012125229536	7.73639323759063	7.55269125333622	-0.1381842249167	0.482122291652108	0.757067585271902
Merged-chr10-42144963-3	chr10	42144843	42145043	+	816.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126561.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	4.25595604860815	3.78936118706269	4.33392072102298	4.31776961642102	3.59056639957694	3.84037088266683	3.87338222724914	4.03714727747872	-0.978092900934101	0.0362067757458382	0.189140696518958
Merged-chr11-4639020-4	chr11	4638935	4639135	+	918.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029291, intron 1 of 19)	intron (NM_029291, intron 1 of 19)	1242.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	4.45466396180284	4.41725399524187	3.65548118510636	4.28722372192571	4.27452033559612	4.33606131430521	4.14522684234046	4.01215626407605	-0.107152661864327	0.814583877883695	0.92840582625946
Merged-chr5-123023350-3	chr5	123023242	123023442	+	942.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	8268.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	4.16426786595077	4.16589525890551	3.93425688276218	4.17176001591778	3.81143243345678	3.83406785039258	3.70117952863746	4.16226930371026	-0.630259393775169	0.154874553536965	0.440269481011378
Merged-chr18-16686808-2	chr18	16686708	16686908	+	932.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007664, intron 2 of 15)	ORR1F|LTR|ERVL-MaLR	122438.0	NM_007664	12558.0	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding	2.57061925201297	2.98756887100271	2.64398731954352	2.75431865645458	2.79302542854087	2.88602490240538	2.8909687067825	2.95759365590026	0.586581917410546	0.359924299603008	0.665587912953958
Merged-chr4-130792830-14	chr4	130792676	130792876	+	912.619019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011520, exon 1 of 5)	exon (NM_011520, exon 1 of 5)	239.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	4.16385256640017	4.13097997248127	4.69477776934839	4.10896851328113	4.48491243660964	4.43659351375582	4.28860789627855	4.55089131596796	0.375502402794148	0.352889770668358	0.659776233521658
Merged-chr8-35850547-4	chr8	35850444	35850644	+	938.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23985.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	4.50802131337049	4.57826256074034	4.7035863938534	4.43444837479952	5.74227735695427	5.4302070645161	5.41985378909648	5.87418146257774	2.05102743190638	5.13180272738528e-11	4.10423130710738e-09
Merged-chr3-116614511-3	chr3	116614390	116614590	+	853.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030016)	promoter-TSS (NM_030016)	97.0	NM_030016	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	3.76820426723933	4.04320296408	4.18986036402748	4.45067173146402	3.6017710787197	3.8321808449031	3.6981208282935	3.65132346376018	-1.31402073592394	0.00645401043904215	0.0572805497556834
Merged-chr5-100570224-4	chr5	100570126	100570326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139198, intron 1 of 4)	intron (NM_139198, intron 1 of 4)	1979.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	6.45856892551541	6.36707240736997	6.22911451923488	6.00293009753165	7.03794317382579	6.63722291004816	6.95979464557616	6.96721237950729	0.949693986564521	2.49617263995607e-05	0.00061800025161542
Merged-chr19-10240792-4	chr19	10240718	10240918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033481)	promoter-TSS (NM_001033481)	-70.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	6.35642521390183	6.29028968268494	6.18322091111574	6.37156113984551	6.20940154757171	6.8497469828212	6.39498722601776	6.40609885999024	0.251741913073158	0.29493026483561	0.607045321864955
Merged-chr13-111944978-4	chr13	111944895	111945095	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	77059.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	4.25589725559044	4.07372732697789	3.89347555691637	3.94561298492832	4.12062864192445	4.01484691011416	3.87782741652776	3.89128780996826	-0.153471759607144	0.721945239065428	0.889042534026745
Merged-chr1-144247110-4	chr1	144247015	144247215	+	903.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015811, intron 3 of 4)	intron (NM_015811, intron 3 of 4)	1989.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	4.44430036917935	4.02919574322161	3.95205836003767	4.27130537369224	4.15435520628882	4.37080476080359	4.13592841266381	4.10387561653806	-0.000569835747417876	0.998906457039746	0.999496221454828
Merged-chr4-144998416-1	chr4	144998316	144998516	+	852.0	f0_balb.idr	intron (NM_001276465, intron 67 of 69)	intron (NM_001276465, intron 67 of 69)	105279.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	3.91936269189103	4.07196826315778	4.2606083588129	4.0366025465243	3.66324018518313	3.76787216628551	3.69393912044512	3.76217247263952	-1.03246505240569	0.0219911837489869	0.136500307087123
Merged-chr7-18873527-4	chr7	18873433	18873633	+	948.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11157.0	NM_009402	21946.0	Mm.21855	NM_009402	ENSMUSG00000030413	Pglyrp1	PGRP|PGRP-S|Pglyrp|Tag7|Tasg7|Tnfsf3l	peptidoglycan recognition protein 1	protein-coding	4.81104566375918	4.76887668608601	4.50357438588054	4.92213510838911	4.94640676107253	5.35534240126663	4.86463270688832	5.46698523203896	0.786633083601071	0.0258007377187094	0.15167399970538
Merged-chr15-57923084-4	chr15	57922981	57923181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001167679, exon 4 of 18)	exon (NM_001167679, exon 4 of 18)	10882.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	6.11856858557708	5.99581019706449	5.96462093211169	6.52901105467105	6.34174354948877	5.94073332879905	6.41496208840765	6.32578131055821	0.118892330297842	0.653554701394158	0.855088323999316
Merged-chr4-138969300-4	chr4	138969177	138969377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025786)	TTS (NM_025786)	2165.0	NM_025786	66825.0	Mm.252312	NM_025786	ENSMUSG00000070661	Rnf186	9130020G10Rik	ring finger protein 186	protein-coding	6.90149760258398	6.94281366978937	6.77867852675826	6.33500326051284	6.34878525400212	6.27041371175459	6.1917699401605	6.15652164070132	-0.742911028836194	0.00254159078958179	0.0281039818882328
Merged-chr8-11602186-3	chr8	11602098	11602298	+	772.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32838.0	NR_030781	102334.0	Mm.12459	NM_133971	ENSMUSG00000031508	Ankrd10	4833425P12Rik|AW549277	ankyrin repeat domain 10	protein-coding	3.69301682998007	3.50742843928794	3.47234306161206	3.74386408154909	3.53521135447952	3.81175964530664	3.57375492109737	3.78901696339347	0.184521791073941	0.703297118244793	0.880690314212345
Merged-chr9-7814084-4	chr9	7813983	7814183	+	783.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	22723.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	3.77682895840203	4.1616300099729	4.27257913243654	3.90735180249474	4.63362977589564	4.17322715066706	3.98166122123475	3.83403150651561	0.419056326986673	0.377007083306633	0.67962484950444
Merged-chr12-85395902-3	chr12	85395787	85395987	+	909.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21170.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	3.58977636378912	3.50452391702826	3.59026977205837	3.78747070858539	3.5469071311091	3.47374199810269	3.52312998359814	3.53478637746707	-0.363528920984101	0.457274150208505	0.740407569101255
Merged-chr8-84925753-2	chr8	84925653	84925853	+	922.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019945, intron 7 of 25)	intron (NM_019945, intron 7 of 25)	11600.0	NM_019945	56527.0	Mm.154614	NM_019945	ENSMUSG00000053693	Mast1	9430008B02Rik|SAST|SAST170	microtubule associated serine/threonine kinase 1	protein-coding	3.06340460342501	2.91416477132485	3.06375423308744	3.18496784088781	3.40512589385965	3.17332562584954	3.17354756272114	3.39667883481466	0.857901965628916	0.128286687833055	0.398556071462137
Merged-chr1-191062957-4	chr1	191062874	191063074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163421)	promoter-TSS (NM_001163421)	-42.0	NM_026895	68972.0	Mm.237188	NM_026895	ENSMUSG00000026632	Tatdn3	1500010M24Rik	TatD DNase domain containing 3	protein-coding	5.30837950200913	5.75798483621135	5.16901358244928	5.61061510147251	5.64518911088211	5.72653654876714	5.8364642610222	5.8623160019846	0.450601948132801	0.11458818866605	0.37446310383904
Merged-chr2-93214402-4	chr2	93214290	93214490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183180, intron 5 of 9)	intron (NM_183180, intron 5 of 9)	26842.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	6.4157274901236	7.35131717630664	6.69721131308552	6.09076666858921	7.33986122080444	7.47512228723656	7.31888714921371	6.67659563491168	0.705900377906193	0.0225025150015652	0.138580663670527
Merged-chr1-131492629-4	chr1	131492516	131492716	+	880.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	34745.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	4.03239816708	4.10030982503977	3.82997144142381	3.85309335925594	4.33015025441707	4.05779644286669	4.10509060256833	3.65241864228462	0.303110381613312	0.506042820039015	0.771810449925155
Merged-chr13-4770555-3	chr13	4770461	4770661	+	905.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-161397.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	4.16715470113503	4.51964183560431	4.48922107667159	4.33433829165317	3.97248202929791	4.24772731416493	3.78670791947252	3.53491661686544	-1.23645058385412	0.00836433135022195	0.0692606725427464
Merged-chr12-86800949-4	chr12	86800846	86801046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66577.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	6.57588771958584	6.52396970815893	6.23312984620448	6.3093771583411	6.34781189081625	6.32846014983738	6.20128138241651	6.28661232940835	-0.176423309246932	0.430592328951014	0.721139064549168
Merged-chr2-60285385-4	chr2	60285259	60285459	+	840.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290660)	promoter-TSS (NM_001290660)	-875.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	4.23613351751641	3.93610343404452	4.51889382198398	4.65965932922564	4.16365019570826	4.16697401702031	3.97303948836009	4.27845630197343	-0.563038129340062	0.198909277683928	0.500571470664132
Merged-chr9-66592287-4	chr9	66592168	66592368	+	902.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144937, intron 1 of 14)	CpG	847.0	NM_001302122	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	3.46489934469132	3.61768315721603	3.57614043332417	3.39233557186472	3.5614008636006	3.45802131751836	3.79970153029322	3.52001679067662	0.269890824656901	0.582311440287834	0.816519074787564
Merged-chr9-32032931-4	chr9	32032885	32033085	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-83151.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	3.80213868081425	3.42022017662054	3.48295637123733	3.73985984209486	3.68573018915531	3.71576745308739	3.47053636042057	3.93418583521442	0.257093712709176	0.604722852659028	0.828509474255204
Merged-chr16-35872579-4	chr16	35872470	35872670	+	908.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1188.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	4.68453745620495	4.67515471624146	4.32929430445385	3.89966307072487	4.16830462553911	4.67197050020989	4.39702780643509	4.32657593324608	-0.0644213753733394	0.884055872728141	0.956390337098447
Merged-chr2-109231478-1	chr2	109231378	109231578	+	582.5	f0_balb.idr	intron (NM_029790, intron 2 of 5)	intron (NM_029790, intron 2 of 5)	46812.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	3.2516160671427	3.22895254932156	3.13703181390725	3.33611871647613	3.28273112715588	2.82055876492461	3.29254920880031	3.13550251918086	-0.352872157475645	0.551274069708977	0.798837168776829
Merged-chr9-90162864-2	chr9	90162782	90162982	+	638.75	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_001326294)	promoter-TSS (NM_001326294)	-96.0	NM_001003911	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	3.59517779025827	3.60497381033982	3.53981366929536	3.79739243140088	3.75741061970024	3.5339317437853	3.63469304552257	3.74774694199945	0.0784989633745594	0.869499116641621	0.951054729822361
Merged-chr17-53567579-4	chr17	53567505	53567705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151733, intron 1 of 16)	CpG	634.0	NR_151733	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	5.34860156271532	4.79113316760985	5.4517482539632	5.08010510047151	4.90722069926242	4.92580630459321	5.02530630041893	4.97705659822133	-0.430647913108853	0.19538248067785	0.496204716600731
Merged-chr9-32516892-4	chr9	32516843	32517043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	24509.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	6.92153049709864	7.10479172319197	7.15573512128444	7.18061411007462	6.49899520068653	6.44563581745955	6.70971612491418	6.54845015246845	-0.772855088007981	0.000122416366299974	0.00239986736941336
Merged-chr17-32349142-4	chr17	32349042	32349242	+	789.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017476, intron 1 of 13)	MER20|DNA|hAT-Charlie	1435.0	NM_017476	54194.0	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	3.6792908012451	3.78282959977593	3.49422019644291	3.77712182712211	4.1132647367553	4.20005250352313	3.77528149653558	4.02972396970368	0.958611720126092	0.036346547093775	0.189601383333662
Merged-chr16-17146899-4	chr16	17146794	17146994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026940)	promoter-TSS (NM_026940)	-73.0	NM_026940	69101.0	Mm.101656	NM_026940	ENSMUSG00000041774	Ydjc	1810015A11Rik|4930521M19Rik	YdjC homolog (bacterial)	protein-coding	5.6111334002798	5.57049879511854	5.75832790981721	5.36603372400863	5.80378386851674	5.65115804158018	5.41956173938649	5.38266822348452	0.0279947403605717	0.921789120680803	0.970959215211546
Merged-chr11-113334658-4	chr11	113334546	113334746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 6 of 9)	intron (NM_027216, intron 6 of 9)	-124977.0	NR_040276	319871.0	Mm.383743	NR_040276	ENSMUSG00000085421	4732490B19Rik	-	RIKEN cDNA 4732490B19 gene	ncRNA	7.17754316233356	6.84152435698564	6.88848626645415	6.95085216759434	5.74049387400643	5.87396144709664	6.00783591060368	5.91063450693915	-1.62518584438673	8.42075841201363e-13	9.09531355096689e-11
Merged-chr7-38018659-4	chr7	38018552	38018752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011274, intron 1 of 10)	(TG)n|Simple_repeat|Simple_repeat	900.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	5.67770207388989	5.55516086615348	5.53690620461681	5.62665144417123	6.09947800029103	6.0748588350531	6.16759155192753	6.10304062153256	0.816898991573511	0.000660852452109166	0.00963515294729174
Merged-chr6-5103973-4	chr6	5103889	5104089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 7 of 15)	intron (NM_181595, intron 7 of 15)	89957.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	6.56369265537239	6.20758569056498	6.48336716694037	6.90510381525076	6.52350113557138	6.10161478148735	6.69307776926524	6.49544470179364	-0.151987845664361	0.556073607568141	0.801817592418236
Merged-chr18-4910048-1	chr18	4909948	4910148	+	804.0	f0_balb.idr	Intergenic	LTR40b|LTR|ERVL	97562.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	2.92387439774045	2.82895116034863	3.14720948785467	3.15266638838671	2.72478571350185	2.75901214265529	2.78782093401525	2.98219355253672	-0.95125743738193	0.134872403449903	0.408839148894254
Merged-chr17-24021870-2	chr17	24021768	24021968	+	653.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-16375.0	NM_175440	213171.0	Mm.133083	NM_175440	ENSMUSG00000050762	Prss27	CAPH2|Mpn|marapsin	protease, serine 27	protein-coding	2.56580996973097	2.28597185858759	2.49214366293906	2.16612192786088	2.88921653769883	2.94122983933746	2.69274218388113	3.04344883128363	2.98147777432343	8.66277617947887e-05	0.00180031458592446
Merged-chr11-80489934-3	chr11	80489835	80490035	+	954.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177390, intron 21 of 21)	intron (NM_177390, intron 21 of 21)	12912.0	NM_009871	12569.0	Mm.142275	NM_009871	ENSMUSG00000048895	Cdk5r1	Cdk5r|D11Bwg0379e|p25|p35	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	protein-coding	3.47989662192949	3.25418123507512	3.63060330649573	3.72530339058947	3.19142691189	3.225269312412	3.2984022872083	3.53041271596597	-0.791197217735514	0.148323548192875	0.430071295027352
Merged-chr15-73622068-4	chr15	73621968	73622168	+	969.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	A-rich|Low_complexity|Low_complexity	2676.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	5.31022860585509	5.32086213631004	4.7951931720196	5.3754483887785	5.52344588595255	5.54430193149756	5.15803410652337	5.67368251733371	0.454015649449531	0.150598502496167	0.433371773162509
Merged-chr7-48882493-4	chr7	48882454	48882654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360812)	promoter-TSS (NM_001360812)	-958.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	6.72342750826376	6.70753307607082	7.46168627004258	7.28932848483553	6.89064937046701	6.66702783254775	6.91493139405999	6.99577573048133	-0.305629978892894	0.21306197206413	0.51819647746712
Merged-chr17-6008801-4	chr17	6008698	6008898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357667, intron 7 of 24)	intron (NM_001357667, intron 7 of 24)	1218.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	7.18768339445104	6.95339958163058	6.96739119872405	7.33946649224578	6.7676138426027	6.82794502890531	6.63217174517416	7.09539256003804	-0.40618555042971	0.0582818883580885	0.253797274241673
Merged-chr5-21332340-4	chr5	21332249	21332449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 3 of 18)	intron (NM_029195, intron 3 of 18)	-40324.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	6.64110908185892	6.42033284774402	6.33441011273264	6.73163427022487	6.27707889168846	6.51049943159794	6.0611447746207	5.97173904539247	-0.491013296025409	0.0441415856326676	0.214299181275833
Merged-chr7-4659088-4	chr7	4658973	4659173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172894)	promoter-TSS (NM_172894)	-123.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	7.9443148236743	7.80165210197788	7.70153820873129	7.89000497121293	7.86332282169968	7.83627748474934	8.11102082626174	7.8908461226378	0.115579754669912	0.491366536037578	0.762962820807111
Merged-chr10-20590295-4	chr10	20590201	20590401	+	931.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	-41973.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	5.38000037353255	5.35793626507177	5.43985684452116	6.41207950048933	4.77544967963269	4.97024917099055	5.99620240862247	5.07332249726618	-0.717434497075003	0.261679254704217	0.573611813883764
Merged-chr10-68737518-4	chr10	68737420	68737620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	13774.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	6.02360939736224	5.71373443724071	7.0344186358304	6.89765540443823	6.96630486117542	6.34908767501318	7.31729614451288	7.02941849259698	0.598356777263492	0.265496486047007	0.577154640086122
Merged-chr12-112617395-4	chr12	112617311	112617511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2636.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	7.7404260885661	7.8275303945334	7.39378983985321	7.8118245527309	7.49155231610777	7.66052184044223	7.66456506074493	7.31456035601048	-0.227257826723393	0.233898806910939	0.543577222708428
Merged-chr3-61605709-4	chr3	61605616	61605816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	241209.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	5.97248747798662	5.67011013359886	6.01493726409532	6.29737709795883	5.8128356975887	5.89396792745205	5.30374681011539	5.60633501748322	-0.556810807388224	0.0556640967869075	0.246922270048317
Merged-chr8-70562932-4	chr8	70562832	70563032	+	918.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	23257.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	4.65408394861329	4.88676685000339	5.09822014736544	5.20332103892613	4.04006096352784	4.56605797801353	4.74886631285324	4.6919029032377	-0.963578687831051	0.0152384880345024	0.106048136469285
Merged-chr1-143918559-4	chr1	143918473	143918673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85576.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	6.71326987459779	6.71780173868551	6.78853731830924	7.27001402915477	6.81246262350767	7.03495640704322	6.69537365062884	6.93269310525505	-0.0586899071455097	0.799488165081468	0.922568099838429
Merged-chr3-48080830-4	chr3	48080708	48080908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54049.0	NR_040408	666202.0	Mm.465057	NR_040408	ENSMUSG00000103257	Gm7977	EG666202	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide pseudogene	pseudo	6.68282736534478	6.31028817966029	6.40639223767613	6.32993786520948	6.86873250155456	6.84497378719461	6.70691405458616	6.50685240389963	0.452340640815949	0.0399513569674199	0.201652080384625
Merged-chr2-118546379-4	chr2	118546270	118546470	+	943.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 2 of 3)	intron (NM_001331221, intron 2 of 3)	1229.0	NM_001331221	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	4.5851453030274	5.33327215720689	4.04146931988592	3.77915770724143	4.73267641225088	5.04798248825142	4.43701587799853	4.36224943203977	0.15639236493291	0.83925943761656	0.938895262970456
Merged-chr4-130838115-4	chr4	130838017	130838217	+	779.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45580.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	4.46646661283419	4.13307218602416	4.05619242292699	4.38950359076163	4.01162463814077	3.84698331820145	4.08610333174299	3.84380979161485	-0.846983230310017	0.0497426869684253	0.230900920550772
Merged-chr4-42933844-3	chr4	42933745	42933945	+	836.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001346526, exon 3 of 9)	exon (NM_001346526, exon 3 of 9)	-16022.0	NM_001355438	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	3.81385241978946	3.74207658318812	4.10970560104416	3.79564000441402	3.31536241072133	3.33749679570759	3.59410686844747	3.66089264332041	-1.24121588761854	0.0150889263084701	0.105285235340711
Merged-chr5-64812716-4	chr5	64812621	64812821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	9198.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	6.2516353452941	6.62464164262668	6.21315703670396	6.6905467742322	6.30622376413823	6.04914224649499	6.36694652064852	6.30536877000602	-0.318454250790961	0.189166731406244	0.488066531391588
Merged-chr8-22708732-3	chr8	22708635	22708835	+	987.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-2152.0	NM_001159774	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	4.28155063883199	4.19494920990268	3.76923155786684	4.0070642119453	4.19229373875164	3.94611334135199	3.86339036072419	3.64785671476895	-0.371387234104124	0.427836849249821	0.718960244888755
Merged-chr1-180296221-4	chr1	180296109	180296309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-34267.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	6.3691462484165	6.23707644714438	6.79483631512475	6.62935642992782	5.92553761324047	5.96284414906612	6.48466827608932	5.72126289106332	-0.714086124876935	0.00932638369046774	0.0750953240615162
Merged-chr15-75909554-9	chr15	75909523	75909723	+	945.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285430)	promoter-TSS (NM_001285430)	-67.0	NM_001285429	66656.0	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	7.23383626107563	7.1808299529183	6.76352817475265	6.84178968267715	7.54827410373063	7.49655204092962	7.59635575367337	7.35464216874137	0.662172129372714	0.000918601674479143	0.0125813254931212
Merged-chr17-71251346-4	chr17	71251213	71251413	+	930.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357336)	TTS (NM_001357336)	46659.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	6.0066150384034	6.32415957516853	6.1673164303404	5.64826470167526	5.095968583801	5.00454230582214	4.74313706913175	5.02789120712231	-1.88008925220136	6.91844150593949e-09	3.80562401817053e-07
Merged-chr6-146643279-3	chr6	146643123	146643323	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025315, intron 1 of 3)	intron (NM_025315, intron 1 of 3)	644.0	NM_025315	108098.0	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	3.74051105050747	3.73538827153991	3.74102915293888	3.83293505647878	3.59502014006278	3.85995574673813	3.82617295280193	3.9339523596356	0.10012888702137	0.825678106850286	0.933159928336386
Merged-chr8-25994182-4	chr8	25994183	25994383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029037)	promoter-TSS (NM_029037)	-162.0	NM_029037	74653.0	Mm.17631	NM_029037	ENSMUSG00000037251	Pomk	4930444A02Rik|Sgk196	protein-O-mannose kinase	protein-coding	5.6175764511624	5.59663870799436	5.59250298741726	5.64591299599556	5.48241175822095	5.44230514090931	5.64042439839451	5.66508750341	-0.0980786621071078	0.708093392525135	0.882710273980338
Merged-chr3-69005935-4	chr3	69005830	69006030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356976, intron 1 of 23)	CpG	1192.0	NM_133786	70099.0	Mm.206841	NM_133786	ENSMUSG00000034349	Smc4	2500002A22Rik|C79747|SMC-4|Smc4l1	structural maintenance of chromosomes 4	protein-coding	6.41825066263596	6.74588644731454	6.489466435756	6.19563499754077	6.81250030204779	6.82498222370581	6.63018035897007	6.4147948909624	0.315055265354045	0.181608796811876	0.47824687501256
Merged-chr15-103177230-4	chr15	103177133	103177333	+	831.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13949.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	4.13619454802835	4.36083505486419	4.28033907948694	4.05191789514247	4.1524627780065	4.49731922493448	4.38909109921608	4.63079312660338	0.522007864075124	0.189633355125014	0.488608489167945
Merged-chr7-98338483-3	chr7	98338376	98338576	+	925.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17268.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	3.74334358022625	3.7791617289327	3.98378642671585	4.04096351428798	3.59735367679905	3.4966957036813	3.67565748708493	3.98127503876271	-0.595286187319703	0.215461229347536	0.521625619663558
Merged-chr11-121748130-4	chr11	121748005	121748205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	45678.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	6.55903233009273	6.72845664837291	6.05356280135852	5.79372895365556	5.75742657606296	6.64550533806242	5.73591932965968	5.3912156039138	-0.557242671728332	0.299401628290734	0.611597316691237
Merged-chr7-28436489-4	chr7	28436407	28436607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022024)	promoter-TSS (NM_022024)	-316.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	9.30948605129458	9.40594722627695	9.12438281070962	9.20142247560998	9.35405546205397	9.48033400355233	9.6565749027743	9.25519031625473	0.221681318194544	0.156868793223847	0.443018796374986
Merged-chr11-3671375-4	chr11	3671279	3671479	+	926.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198162, intron 5 of 25)	intron (NM_198162, intron 5 of 25)	12679.0	NM_198162	74522.0	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	4.62174842740982	4.57553046417994	4.99319040557914	5.00453541983935	4.72439906118667	4.88072524868742	5.11855937582348	4.70264344574591	0.0772600763693947	0.827786315250473	0.933903677361406
Merged-chr13-98255212-4	chr13	98255136	98255336	+	977.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178918, intron 6 of 12)	intron (NM_178918, intron 6 of 12)	7756.0	NM_178918	105372.0	Mm.28221	NM_178918	ENSMUSG00000041747	Utp15	AW544865	UTP15 small subunit processome component	protein-coding	4.62794869524124	4.73234864081864	4.53277075723381	4.75844723844526	5.68003787860331	5.16697648352599	5.27465942852957	5.35170426362851	1.36702182902947	2.87499375915773e-05	0.000699860399394966
Merged-chr7-113197354-4	chr7	113197186	113197386	+	972.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10179.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	4.85039624999708	4.40565929816991	4.47969769107598	4.84746908549329	4.45506704450517	4.52012755001924	4.50157565364581	4.51927551931389	-0.389174223787032	0.293745438023221	0.606184232084391
Merged-chr15-31410222-4	chr15	31410101	31410301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42442.0	NM_027496	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	6.73699762407279	6.79153848633716	6.76612637267776	6.74175689746001	6.4749016224597	6.40004027959745	6.45576994534046	6.56755761314234	-0.407274979435887	0.0430316356436908	0.211034090773203
Merged-chr2-29640686-6	chr2	29640594	29640794	+	881.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	20974.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	3.42942107105022	3.43513549402967	3.06291815572624	3.32275093313377	3.27902448636396	3.4319397829576	3.24758594343024	3.57828211167777	0.231737374862609	0.667006952226438	0.862204789067879
Merged-chr3-35754562-4	chr3	35754463	35754663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151627, intron 1 of 31)	CpG	500.0	NM_029570	76295.0	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	6.20025931557518	5.9915477767969	6.1054451111266	5.97715212664866	5.88645810117306	6.25974395034475	5.83466533705722	5.75999872778173	-0.188705804941727	0.452895679282096	0.737124403896835
Merged-chr5-138683611-3	chr5	138683505	138683705	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60746.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	5.0324222763131	4.77360145027108	4.93751671063223	4.30622666548526	5.03751755389415	4.77451126799555	4.81058762496202	4.59434922947442	0.0973671943850616	0.799052103442249	0.922381586635156
Merged-chr2-18672335-4	chr2	18672223	18672423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_147778)	promoter-TSS (NM_147778)	-139.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	7.63430662730939	7.55595862707844	7.39787848262009	6.96738114105719	7.8916004944904	7.63423653205651	7.47613661866616	7.52627263495834	0.325478698750253	0.136143684861061	0.410600031554827
Merged-chr19-29512215-7	chr19	29512104	29512304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015567, intron 2 of 3)	(GGGAGA)n|Simple_repeat|Simple_repeat	9783.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	5.24477924676932	5.00532122966599	5.1559175193241	5.00697178729118	5.08498595638999	5.12869307953928	4.96609886785469	5.05548694722086	-0.0693596232353164	0.819787526604784	0.931034501646647
Merged-chr6-31220372-4	chr6	31220263	31220463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040257)	promoter-TSS (NR_040257)	12.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	5.74292442553441	5.83436708333078	5.91497257583162	5.88422960029705	5.83574652298597	6.11274032556633	6.01422652082808	6.26631982483933	0.330836442148758	0.181832984418418	0.47847282801917
Merged-chr11-118095197-4	chr11	118095106	118095306	+	907.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 27 of 80)	ORR1E|LTR|ERVL-MaLR	34013.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	4.3422219625698	4.71755860263534	4.29396325681913	4.54932710771714	4.5788704698558	4.77471331067238	4.7623718053727	4.56029107196188	0.377721082610133	0.300859698435326	0.612761385269876
Merged-chr6-16977534-3	chr6	16977430	16977630	+	825.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79089.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	3.30186321344623	3.59752402596822	3.30226969684351	3.45359281246821	3.21853862247503	3.14359237100714	3.82365477908881	3.41717633497478	0.0203786588997914	0.971152613644966	0.989658571278133
Merged-chr11-103310098-4	chr11	103309990	103310190	+	796.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34612.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	4.10059471750033	4.16527203420844	4.14695258296341	4.18805331386859	4.08333944022846	3.90669903262577	3.93744067984837	4.27231553904974	-0.242705111936097	0.557377928762833	0.802589488416607
Merged-chr1-58618436-4	chr1	58618334	58618534	+	951.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32037.0	NM_025597	66495.0	Mm.2033	NM_025597	ENSMUSG00000026032	Ndufb3	2700033I16Rik|CI-B12	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3	protein-coding	4.72924084377234	4.68043907108612	4.18688867815346	4.79721747654778	4.60414275074655	4.82657394929694	4.94070744496497	4.52741543183435	0.212283559331785	0.576484353582773	0.813528813094395
Merged-chr19-24703850-1	chr19	24703750	24703950	+	901.0	f0_balb.idr	intron (NM_175013, intron 10 of 10)	L3b|LINE|CR1	29842.0	NM_183160	226040.0	Mm.391170	NM_183160	ENSMUSG00000048572	Tmem252	E030010A14Rik	transmembrane protein 252	protein-coding	3.4036638474396	2.91846547669092	3.49533406044436	3.68795578436283	2.71605215143838	2.68569650926522	2.7333455443799	2.65972157029454	-3.70005328932517	1.99798849851824e-05	0.000508636707210406
Merged-chr8-79163069-4	chr8	79162968	79163168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	85515.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	6.59649109974091	6.68133191956725	6.9408758443073	7.28614401091168	6.4998525088802	6.25867751299154	6.18120977787541	6.33076009319877	-0.853158192719688	0.000616524983662613	0.00913481095173213
Merged-chr10-21992154-4	chr10	21992049	21992249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161849)	promoter-TSS (NM_001161849)	-74.0	NM_001161849	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	5.82209166741834	5.72899797945178	5.89008924514165	6.00676745891739	5.52000527144471	5.59984687117875	5.56960300197531	5.64739903003769	-0.489822857390534	0.0566833522838084	0.249383443629189
Merged-chr7-141057206-4	chr7	141057101	141057301	+	958.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4073.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	4.60446453898239	4.99986077764602	4.70341068585367	5.372655456809	5.62938554056385	5.14298150664646	5.86316867099335	5.75080861797302	1.1457060811799	0.00209020061465837	0.0241876751017344
Merged-chr6-116004910-4	chr6	116004815	116005015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9910.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	6.06357258557357	6.26123624291955	5.8852083630099	6.25744815617512	5.8711541726974	6.21879222079481	6.13348727358995	5.75461494250523	-0.211823829621093	0.405993316323965	0.702509821356576
Merged-chr15-101141325-4	chr15	101141218	101141418	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277255, intron 11 of 11)	(CTGGGG)n|Simple_repeat|Simple_repeat	12796.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	4.16658846598392	4.14709006057947	4.16718297325853	4.40216485368012	5.17866597243198	4.83778812643353	4.91003805284534	4.54399808966412	1.42211209487856	0.000261905597016753	0.00453769829587898
Merged-chr14-66230142-3	chr14	66230055	66230255	+	807.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-16331.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	3.73603934489159	3.49466890093588	4.17334069179177	3.60102651321652	3.36548501062972	4.05394346050815	3.61360087997786	3.56834630194155	-0.303034974730011	0.572882996242504	0.81147119041502
Merged-chr11-23762862-4	chr11	23762772	23762972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	8098.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	6.38495939209244	6.67891929925932	6.7069730803011	6.81185333698742	6.47028090040927	6.3239640504297	6.5390517258138	6.24674127930735	-0.38205411050302	0.0866876619639615	0.321204637737263
Merged-chr4-115857485-4	chr4	115857368	115857568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355174, intron 3 of 11)	intron (NM_001355174, intron 3 of 11)	18270.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	6.88686220112028	6.66544469735747	7.06677910086311	7.37273699930297	7.01595072124355	7.05147133607272	7.24815966551087	6.82711574517723	0.00714150982910381	0.975474129411716	0.991324270933399
Merged-chr5-150900886-3	chr5	150900795	150900995	+	638.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-51712.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	3.7928646168514	3.1984539951243	4.34983565988878	4.38596790036001	3.91735004180537	3.67881746206315	3.77788283418759	3.7912316345704	-0.608348724810275	0.526266745671344	0.783582066523179
Merged-chr13-20209066-4	chr13	20208978	20209178	+	877.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 3 of 21)	intron (NM_080288, intron 3 of 21)	118571.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	4.53810700086574	4.22891410448884	4.69213855010276	4.78473916072901	4.16062394727458	4.78898959981509	4.59598499304467	4.45185582747261	-0.169716894801097	0.674128879807271	0.866008871206355
Merged-chr3-123509385-2	chr3	123509286	123509486	+	811.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1050.0	NR_028574	69895.0	Mm.260791	NR_028574	ENSMUSG00000104960	Snhg8	1110065M07Rik|2010109N14Rik	small nucleolar RNA host gene 8	ncRNA	3.38959705745439	3.60275872486531	3.71107916333996	3.58928346728076	3.26322184282844	3.30673591880107	3.59768284874744	3.75515291467232	-0.280582891358121	0.591809481878961	0.821848634889742
Merged-chr12-100053805-4	chr12	100053711	100053911	+	947.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	ORR1F|LTR|ERVL-MaLR	-58520.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	4.82621109831264	5.49361409374031	4.78729073430812	4.90248698825855	5.36789613007275	4.49729288979142	4.95053437727184	5.03910849849847	-0.0504009604081121	0.897520252443723	0.961755066043397
Merged-chr16-92697930-3	chr16	92697961	92698161	+	925.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009821)	promoter-TSS (NM_009821)	-732.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	3.25832523920276	3.57601186519996	3.12489021210087	3.351652902695	3.48353086919272	3.55238721492472	3.42387849391229	3.68653287166593	0.66033563037998	0.207451025976663	0.511447929091922
Merged-chr2-161177902-1	chr2	161177802	161178002	+	688.5	f0_balb.idr	Intergenic	Intergenic	-68816.0	NR_126509	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	3.37175206441445	3.48653244608613	3.42878623837205	3.4351174036561	3.26354955355751	3.22835806421265	3.52030319812621	3.63076041535638	-0.0452490115871014	0.930571410199456	0.975012758004775
Merged-chr15-79323636-4	chr15	79323587	79323787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016915, intron 1 of 15)	intron (NM_016915, intron 1 of 15)	4684.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	6.77443098916644	7.00050904402315	6.68510225024824	6.58544529030575	6.93385067510931	7.1153835180202	7.07056734056619	6.84151882556008	0.320933754615181	0.122050417986005	0.387226507770263
Merged-chr15-58415466-4	chr15	58415354	58415554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145959)	promoter-TSS (NM_145959)	-14.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	6.84381840398882	6.85361206127774	6.65430254977848	6.84172516576146	6.93163020176299	6.9514872793976	6.65156752518004	6.88032182211543	0.0789286594734735	0.692437117696181	0.87491802620234
Merged-chr1-92956812-4	chr1	92956706	92956906	+	960.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-6216.0	NR_015525	100037260.0	Mm.442236	NR_015525	ENSMUSG00000100632	9430060I03Rik	-	RIKEN cDNA 9430060I03 gene	ncRNA	4.74776978101275	4.85856571739742	4.67195152872479	3.21424333171396	4.98260331407896	4.72788092557502	4.76142334420373	5.01255738387923	0.639247544860796	0.410724503042212	0.706124327376495
Merged-chr16-24433616-4	chr16	24433509	24433709	+	939.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-14482.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	5.02325441546807	5.37943331543242	5.43914259461332	5.44486857483388	4.5743951641217	4.69208351741617	4.43840081115794	4.0506376804418	-1.79858165375241	1.846883289465e-06	6.09737039243179e-05
Merged-chr11-109302496-2	chr11	109302396	109302596	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4315.0	NM_011268	19739.0	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	2.7760426627625	2.64224325280781	2.7763306332216	2.88176694567693	2.94829767307865	3.01137091141297	2.89360347350578	3.17201707708486	1.01481154835622	0.101322331042087	0.349327869353383
Merged-chr18-32375615-4	chr18	32375512	32375712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045403, intron 1 of 2)	intron (NR_045403, intron 1 of 2)	-1605.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	5.4065412025252	5.26861716724055	5.37720534481456	5.48145942880463	5.7315821032246	5.55280614666659	5.8670957508601	5.69720907519313	0.557943619135788	0.0375077602647615	0.193419174663874
Merged-chr17-37203768-4	chr17	37203665	37203865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5799.0	NM_001011518	258219.0	Mm.377382	NM_001011518	ENSMUSG00000043827	Olfr94	MOR256-32P	olfactory receptor 94	protein-coding	5.85268589839232	6.21387949181025	5.64039312114969	6.29070901737055	6.2544278718006	6.00598066044349	6.02655821708861	6.01069102925961	0.0603410939328606	0.822954237898729	0.932185203682946
Merged-chr11-117139334-4	chr11	117139274	117139474	+	745.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	24202.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	3.57045098446215	3.23883971808805	3.57096559265738	3.69905302613852	3.18905777653783	3.52225108365898	3.39491291394371	3.56888436926142	-0.392342576641342	0.463321735241493	0.744647770407916
Merged-chr4-149702844-5	chr4	149702676	149702876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1147.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	6.49251567544806	6.84520381012822	6.66727749040198	6.75373822342464	7.4055795396995	7.13322250624227	7.15483201209504	7.36495109075692	0.790134424752649	7.57085579798667e-05	0.00160014632664309
Merged-chr11-4989328-3	chr11	4989211	4989411	+	968.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243044, intron 1 of 21)	intron (NM_001243044, intron 1 of 21)	2487.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	4.02227998730244	3.77485338376827	3.79116634117023	4.31718925359412	3.68218037191612	3.41955482730737	3.67090609099182	3.56820088870651	-1.24507936597606	0.0136376611470349	0.09819030971159
Merged-chr10-68063653-4	chr10	68063575	68063775	+	780.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie2b|DNA|hAT-Charlie	84105.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	3.50759574575392	3.66197707741934	3.74941503734339	4.06018730551614	3.84950429817816	3.86945207130432	4.2625246923782	4.04200029200944	0.649295183643623	0.185528355277486	0.483497702336656
Merged-chr9-14998785-3	chr9	14998687	14998887	+	896.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46691.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	3.97990411072573	3.90718979919126	4.36445248372525	4.78797783548866	3.57439586510967	3.55679666346763	3.86105399821645	3.87481708190384	-1.65404241646485	0.00133754400981187	0.0170313139667977
Merged-chr2-154593271-4	chr2	154593163	154593363	+	861.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021534, intron 2 of 3)	intron (NM_021534, intron 2 of 3)	10410.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	4.42270610182063	4.91314637634968	4.28004728506192	4.02513291172086	4.71783767892568	4.60021303102106	4.88329645906021	4.58994863209113	0.565365322859514	0.171212079785309	0.464308478189451
Merged-chr9-31029870-3	chr9	31029708	31029908	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172765)	promoter-TSS (NM_172765)	-836.0	NM_001115130	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	4.36957774040014	3.93532579321518	4.37026530216839	4.42520289459024	4.55307656375278	4.45569134450386	4.39130902198596	4.03389798911757	0.198849965489395	0.633107968243573	0.844432636352907
Merged-chr4-55488808-4	chr4	55488706	55488906	+	960.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16B|LTR|ERVL	43669.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	5.09832886449337	4.75223024068911	5.06948401636109	5.03430768097898	4.61755657782907	4.8561508586056	4.70003706325288	4.71866131988964	-0.570624343677575	0.0867766240874323	0.321249977943483
Merged-chr7-120982380-4	chr7	120982283	120982483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007672)	promoter-TSS (NM_007672)	-71.0	NM_001354986	12585.0	Mm.1640	NM_007672	ENSMUSG00000030878	Cdr2	AA617262	cerebellar degeneration-related 2	protein-coding	8.03761032549002	8.00174954766075	7.92227969607166	7.8597357757389	8.06750602734799	8.12117927729374	7.84037954987789	8.07859108512932	0.101773204658807	0.532598144746589	0.788200754532765
Merged-chr10-14188087-4	chr10	14187880	14188080	+	917.0125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	221601.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	3.1554242229409	3.04946683498792	3.09724845505739	3.24456757908193	3.21685113101691	3.00972166332551	3.08649699361205	3.21002526541546	-0.0306243610488868	0.956429112686319	0.984663539759604
Merged-chr9-49484929-3	chr9	49484880	49485080	+	792.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172770, intron 1 of 21)	intron (NM_172770, intron 1 of 21)	1245.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	4.06946984802039	3.92183335581989	4.45952509631545	4.48133066010421	2.99005170756495	3.18080207056346	3.21352541492578	3.29697844444696	-4.67943692623893	1.27052877727257e-08	6.6204222428612e-07
Merged-chr2-11535585-4	chr2	11535471	11535671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	CpG	18358.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	7.75299577507194	7.79102932080748	7.53902347282499	7.79707685223959	7.72514312836989	7.77162462096577	7.82963481896698	7.87670069514082	0.0915455724518095	0.583767121234854	0.817404884966276
Merged-chr4-45013233-4	chr4	45013131	45013331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163284)	promoter-TSS (NM_001163284)	-819.0	NM_173399	230119.0	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	4.96709650099372	5.1258930891397	5.00207858081575	4.90413998578348	5.03454425543231	5.0705452217595	4.79881958056137	4.85638899782863	-0.0946327585199467	0.765400140330391	0.908220654138999
Merged-chr10-80420823-4	chr10	80420748	80420948	+	986.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164153, intron 5 of 18)	intron (NM_001164153, intron 5 of 18)	12805.0	NM_001164150	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	4.57081657547232	4.52713279053985	4.80833572795931	5.33622684055158	4.71844455182001	4.17770200838216	4.74899602733632	5.00437926724508	-0.355987395615412	0.408080398230358	0.704163749470029
Merged-chr4-53051082-2	chr4	53050982	53051182	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 34 of 49)	intron (NM_013454, intron 34 of 49)	39202.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	2.4400482574493	2.10890297430177	2.30087301892744	2.32620722432806	2.28407433546023	2.54613540474098	2.55596756850667	2.62359547239254	1.16285906431178	0.121546938873769	0.386162719250847
Merged-chr7-128298047-4	chr7	128297923	128298123	+	876.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145590, exon 1 of 13)	exon (NM_145590, exon 1 of 13)	108.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	4.51885347993094	4.1291831781568	4.55867615938762	4.3295813008684	4.16137420567097	4.83806041058947	4.49836155382432	4.3917921855478	0.224971438298836	0.579265876220864	0.815292704330909
Merged-chr3-100921649-2	chr3	100921549	100921749	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165953)	promoter-TSS (NM_001165953)	-844.0	NM_001165952	229644.0	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	3.52684021570425	3.7583520679324	3.58449710301439	3.36749908803618	3.82347838268611	3.81163516117954	3.26092564753684	3.96600777469752	0.556145001038439	0.286662492429009	0.598350475018457
Merged-chr1-123934526-4	chr1	123934418	123934618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199021, intron 1 of 25)	intron (NM_199021, intron 1 of 25)	111041.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	7.63225183421114	7.71803646923187	7.95210673130297	8.14224627613994	7.93484906847682	7.97653484262099	7.85073674009582	7.58331704172805	-0.0516732080109482	0.791543482866146	0.919167214286894
Merged-chr1-33670431-4	chr1	33670334	33670534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008922)	promoter-TSS (NM_008922)	610.0	NR_033199	67503.0	Mm.87069	NM_026204	ENSMUSG00000103746	1700001G17Rik	-	RIKEN cDNA 1700001G17 gene	ncRNA	6.23550957380877	5.94008651919412	6.03683196468436	6.40890528957323	5.91707821665055	5.55619542246759	6.32697796568858	6.33823878753771	-0.161263440599438	0.571069588402616	0.810348982482694
Merged-chr4-26346847-4	chr4	26346736	26346936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172865)	promoter-TSS (NM_172865)	-184.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	7.78823412817385	8.01600743881185	8.66805926780371	8.23991477851357	7.86641372102697	8.09091944052974	7.93941664057831	8.01353956345783	-0.310851419904341	0.145242612072145	0.424703750063573
Merged-chr8-4109058-4	chr8	4108936	4109136	+	823.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3272.0	NM_026956	69142.0	Mm.171061	NM_026956	ENSMUSG00000051906	Cd209f	1810029C22Rik|AI647041|SIGNR8	CD209f antigen	protein-coding	4.03779720045377	3.964415985484	4.21918006695758	4.62495684244518	4.02087979485547	3.89024521583118	3.86868197696102	3.98659027986206	-0.817865009650646	0.0740324746131699	0.293176672443019
Merged-chr1-133131159-4	chr1	133131064	133131264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133819)	promoter-TSS (NM_133819)	-2.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	8.67439904209414	8.76254942931583	8.60843843210168	8.56078521280203	8.65726525039836	8.73919446232521	8.76454783178313	8.59368764351033	0.047804113491458	0.744576946697936	0.899296531468148
Merged-chr1-52817338-4	chr1	52817223	52817423	+	850.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008384, intron 1 of 5)	CpG	365.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	4.23072753662545	4.26171775534767	4.27241575286943	4.02960089449942	3.98202554620556	3.96292030875042	3.93532584990456	4.09636873852013	-0.524137250934577	0.208990289529769	0.513380722613176
Merged-chr14-16373980-3	chr14	16373881	16374081	+	755.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009409, intron 1 of 35)	intron (NM_009409, intron 1 of 35)	8775.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	3.05752358657416	3.03747901429727	3.42316696986322	3.4841190303718	3.6408430125767	3.30228540218333	3.30005349108952	3.47313572787746	0.570510816327746	0.32200524219065	0.633481969373104
Merged-chr16-97922577-4	chr16	97922478	97922678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174847)	promoter-TSS (NM_174847)	55.0	NM_174847	207781.0	Mm.1465	NM_174847	ENSMUSG00000045975	C2cd2	5730563M15|5830404H04Rik|AI314146|AI449533|BF168443|ORF25|mKIAA4045	C2 calcium-dependent domain containing 2	protein-coding	8.06164618207143	7.8288882813914	7.95735069761818	8.03703163577426	7.55605953750735	7.87555257629308	8.01179091533794	7.87385766929609	-0.184419124918651	0.302005031724545	0.61430617989659
Merged-chr13-83731351-1	chr13	83731251	83731451	+	544.0	f1_c57bl6.idr	intron (NR_152244, intron 2 of 4)	CpG	-1142.0	NR_152246	320203.0	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik|ECONEXIN|EyeLinc1|Visc-1	RIKEN cDNA C130071C03 gene	ncRNA	2.46713186495546	2.6239511424913	2.52873587571176	2.19311744930369	2.20766503384034	2.36736259479529	2.25790416307075	2.1882898504441	-1.26122317911058	0.110872904419498	0.367844213342608
Merged-chr13-35087890-3	chr13	35087794	35087994	+	672.477783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79910.0	NR_153831	75197.0	Mm.234091	NR_153831	ENSMUSG00000113906	4930529N20Rik	-	RIKEN cDNA 4930529N20 gene	ncRNA	3.76179178447749	3.43613240948549	3.67383839496672	3.24149217917067	3.54872609831225	3.14388226955641	3.16453636487042	3.30144414680715	-0.789323098506501	0.171287956469222	0.46444346704974
Merged-chr6-115343791-4	chr6	115343689	115343889	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17162.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	4.88250907415844	4.6326427124495	4.55413218322225	4.80189369794026	4.73668784069552	4.2965497760356	4.30825234063312	4.81400907507452	-0.340571109421422	0.369347702470184	0.673651951566863
Merged-chr9-21291358-4	chr9	21291256	21291456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009878)	promoter-TSS (NM_009878)	-147.0	NM_009878	12581.0	Mm.29020	NM_009878	ENSMUSG00000096472	Cdkn2d	INK4d|p19|p19INK4d	cyclin dependent kinase inhibitor 2D	protein-coding	9.40102482840021	9.63347116130944	9.52984475615774	9.63553291563478	9.33120228637741	9.64465818715575	9.54481639017559	9.31766629693038	-0.11088726617186	0.464209045428135	0.745287689550157
Merged-chr11-88187974-4	chr11	88187839	88188039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172099, intron 6 of 9)	intron (NM_001172099, intron 6 of 9)	-6167.0	NM_001291270	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	5.07800099196189	4.90805512004232	5.42327972321387	4.69951855630941	4.88443061175962	5.18577108292092	5.08626281451329	5.17064024386764	0.0856264151734704	0.80356965901259	0.924206385064264
Merged-chr16-22070735-3	chr16	22070632	22070832	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 10 of 15)	intron (NM_183029, intron 10 of 15)	61248.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	3.26332841787639	3.21720790483199	3.7387010822092	3.36180386057727	3.61803339049252	3.49986610049797	3.37278631904559	3.44041422942261	0.27821641658514	0.598646553955395	0.825987886019831
Merged-chr5-81058360-4	chr5	81058259	81058459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 1 of 27)	intron (NM_198702, intron 1 of 27)	36766.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	6.51126119092301	6.25226548689587	6.90791939495335	6.91971885325786	6.6779331892313	6.67239715699419	6.79547862121155	6.7846102126346	0.064055850269721	0.787865006346028	0.91781547416088
Merged-chr2-59286512-4	chr2	59286336	59286536	+	892.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 3 of 20)	intron (NM_175464, intron 3 of 20)	100246.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	4.12311015124086	4.28306370522985	4.85115745484034	5.01459018737927	3.70419916177143	3.96480924717356	4.20400983571265	4.22017070126607	-1.44912323312884	0.00244958153382188	0.0273265514146944
Merged-chr13-12370116-4	chr13	12370024	12370224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25251.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	6.18098621237436	6.6179799128513	6.45369367573282	6.74927821440159	6.17262398265071	6.27587601239821	5.88298103363775	5.77786102591084	-0.730987958515178	0.00452942229284625	0.0441341203809039
Merged-chr14-31434222-5	chr14	31434184	31434384	+	911.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 1 of 8)	intron (NM_011894, intron 1 of 8)	1816.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	3.96883107923139	3.892328261368	3.87210814830669	3.99209099535546	3.69711911597315	3.77046926561334	3.90511529768277	4.10004637454025	-0.180497686254776	0.684151369727457	0.870625464432953
Merged-chr1-150266697-2	chr1	150266597	150266797	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52720.0	NM_024458	20028.0	Mm.440883	NM_024458	ENSMUSG00000006007	Pdc	Rpr-1|Rpr1	phosducin	protein-coding	3.20077882349209	3.23579845386194	2.86226437690006	2.7523959453266	3.40271517961685	3.58977936685364	3.35526021978457	3.13821606828905	1.36122856241531	0.0230364613284083	0.140523782378677
Merged-chr4-145209486-3	chr4	145209411	145209611	+	805.964294	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-14506.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	3.41006854259183	3.68227693712928	3.69507756471746	3.54181960195237	3.65005071529208	3.9608337130257	3.72921770089591	3.47076327862826	0.388751698454612	0.424416664386555	0.716123917662497
Merged-chr10-94917372-4	chr10	94917262	94917462	+	846.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 2 of 30)	intron (NM_018797, intron 2 of 30)	27216.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	4.13183290874872	4.40259542298563	4.36903594573979	4.40076182523512	4.51746622487567	4.30948305574536	4.58304065854676	4.36630511075414	0.268216854038765	0.477441632743987	0.753617106887338
Merged-chr7-129859860-3	chr7	129859764	129859964	+	952.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102301.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	4.13343215077025	4.35301881632831	4.46382810907498	5.08046100615975	3.65039553910238	3.53147729489026	3.91489702263639	3.4830449044107	-2.53325664154809	2.5281659674046e-06	8.09866450917605e-05
Merged-chr12-17691470-4	chr12	17691342	17691542	+	916.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	CpG	633.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	4.4408614867518	4.21328241061755	4.62573263629777	4.04550729679809	4.30958735451193	4.09219266885295	4.11108612847971	4.55223486347332	-0.130980653808796	0.758093974495026	0.904926340425875
Merged-chr6-101545805-2	chr6	101545698	101545898	+	705.375	f0_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-167901.0	NM_018884	55983.0	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	4.19738380446137	3.74151589208012	4.19807825407636	4.1184846258244	3.83931258737833	3.54503221940333	3.60935871543089	3.62065568499346	-1.18661574250136	0.014604578769116	0.102822879545688
Merged-chr3-103914398-4	chr3	103914241	103914441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001356556, exon 1 of 8)	5' UTR (NM_001356556, exon 1 of 8)	221.0	NM_172684	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	8.45283986157712	8.33489071121535	8.61880565332993	8.4767945451332	8.26560675459872	8.52162606035908	8.46898824656414	8.20528598649265	-0.132139777039888	0.416604321935043	0.71062040861306
Merged-chr8-124750288-3	chr8	124750157	124750357	+	785.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081120, intron 1 of 1)	intron (NM_001081120, intron 1 of 1)	1552.0	NM_001081120	69627.0	Mm.271600	NM_001081120	ENSMUSG00000043068	Fam89a	2310031A18Rik	family with sequence similarity 89, member A	protein-coding	2.99307714525999	3.52511066383848	3.31457739046765	3.1101955374401	2.53977104761307	2.67836650817497	2.56388551185114	2.64866339060578	-3.73204786724819	3.09122607949612e-05	0.000745612948534241
Merged-chr9-58588863-4	chr9	58588766	58588966	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151824, intron 1 of 7)	intron (NR_151824, intron 1 of 7)	6626.0	NM_001357751	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	5.5973790152865	5.00207816131167	5.36166894110777	5.46296723367812	5.3350891545659	5.01417702490581	5.36332792390741	5.41447103559892	-0.145748398935367	0.637892102580387	0.847011595650305
Merged-chr6-112760846-4	chr6	112760740	112760940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 10 of 21)	intron (NM_080448, intron 10 of 21)	-64170.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	6.08262390471289	5.92662153228965	5.16746421361527	5.36065796355445	6.0783710655555	5.81788176406068	5.73818321843823	5.43788361861592	0.183728964568485	0.581570236931692	0.816384410021712
Merged-chr9-95189024-2	chr9	95188924	95189124	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 14 of 15)	MIRb|SINE|MIR	218246.0	NM_018763	54371.0	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	2.90927294097128	2.75676389866374	2.8500784597095	3.21403141713927	2.5748645397607	2.82727209417294	2.64579677935381	2.78631729524756	-1.1786199800332	0.0817811781905183	0.310376032120656
Merged-chr2-27030822-4	chr2	27030720	27030920	+	771.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2822.0	NM_001177627	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	3.24155717628688	3.98194150316201	3.72035300276544	3.12939307000622	3.53873491344309	3.55978573419967	3.84483335041831	3.81460396803068	0.398155279449629	0.485293084286999	0.759216653544759
Merged-chr7-46795818-4	chr7	46795782	46795982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291075)	promoter-TSS (NM_001291075)	-1.0	NM_001005247	246694.0	Mm.379442	NM_178742	ENSMUSG00000014418	Hps5	AI646796|AL022647|C85120|haze|hz|maroon|mr|ru-2|ru2	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	protein-coding	6.89687179311807	6.81267227793641	6.92392075783751	6.66371280230952	6.75515260977172	7.16206287871308	6.58794853630505	6.79835795921878	0.0267254859336307	0.902166683282043	0.963687586843739
Merged-chr18-80932752-4	chr18	80932656	80932856	+	897.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015805, intron 1 of 28)	MIR|SINE|MIR	1302.0	NM_001201569	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	4.52176275729317	5.07361527449836	4.60652493213265	4.34011617780432	4.92611875102682	4.46693689495518	4.87221210664609	4.38263729052698	0.0674846156062394	0.868140476235764	0.95061428059965
Merged-chr12-65037714-4	chr12	65037600	65037800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177806, intron 1 of 13)	intron (NM_177806, intron 1 of 13)	1366.0	NM_177806	328110.0	Mm.283339	NM_177806	ENSMUSG00000035597	Prpf39	Srcs1	pre-mRNA processing factor 39	protein-coding	5.64253827318066	6.00255615183707	5.72005199737252	5.58869051653391	5.65483954338222	5.68151517541969	5.53421291745414	5.81121996039274	-0.114977423802299	0.668116303515608	0.862837936034118
Merged-chr12-54999206-4	chr12	54999121	54999321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12885.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	6.04159554721449	5.97377631404924	5.81413728641152	6.2513158808379	6.10410037044876	6.01523195441701	5.83352591295786	5.95190149251041	-0.0975443480421392	0.697633409153906	0.877977201438932
Merged-chr19-55820430-4	chr19	55820322	55820522	+	977.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-74899.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	5.73385791022007	5.56360895527068	5.48943847267335	5.86510246619584	5.08917400489177	5.05939781901577	5.25774876327841	5.24795694175056	-0.925156060540694	0.00138619888913264	0.0175379045022347
Merged-chr13-49684164-4	chr13	49684056	49684256	+	981.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172015, intron 1 of 33)	intron (NM_172015, intron 1 of 33)	2026.0	NM_172015	105148.0	Mm.21118	NM_172015	ENSMUSG00000037851	Iars	2510016L12Rik|AI327140|AU044614|E430001P04Rik|ILRS	isoleucine-tRNA synthetase	protein-coding	4.96313282956991	4.77068973075255	4.44253694781762	4.93866031033564	4.85571661164551	4.92313885989535	5.03405714783264	4.74594169103991	0.175521670990469	0.610878669300816	0.832042955321816
Merged-chr10-128412329-2	chr10	128412229	128412429	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026259, intron 1 of 7)	intron (NM_026259, intron 1 of 7)	713.0	NM_026259	67588.0	Mm.294120	NM_026259	ENSMUSG00000025373	Rnf41	2210404G21Rik|4930511A05Rik|4933415P08Rik|D10Ertd722e|FLRF|Nrdp1	ring finger protein 41	protein-coding	2.68720770547393	2.69940251423103	2.68755089145973	2.46574269710995	2.45886217013111	2.7301954738037	2.47939230119486	2.74681032016039	-0.131184546279288	0.847431993819132	0.94229862509259
Merged-chr4-134758661-4	chr4	134758571	134758771	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 2 of 8)	intron (NM_145554, intron 2 of 8)	9333.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	5.18203002987394	5.36744264478138	5.15057799444749	5.2545524102914	4.89085791114937	5.15248441311747	5.15746860341311	5.43787712677394	-0.148873095448026	0.630440356272653	0.842864652876243
Merged-chr5-105711641-3	chr5	105711564	105711764	+	862.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	10854.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	3.48367764994794	3.03786927608024	3.43003510747654	3.6917461214931	3.42023620836673	3.36453494180136	3.41676470597924	3.53402699956834	-0.0262743905925864	0.962403079472728	0.986542881001127
Merged-chr6-120470884-4	chr6	120470814	120471014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	7717.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	7.55968702779304	7.95493735338064	7.93017428498271	7.74017317702797	7.61937131718777	7.70139008601228	7.61174209565444	7.48049558648139	-0.261890212667145	0.143281609599183	0.421483724827882
Merged-chr11-74831388-4	chr11	74831303	74831503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 1 of 5)	CpG-2219	479.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	4.76705417561931	5.18147865660168	4.84578803817941	4.78460556145883	4.94155209232024	4.82026826697253	5.26148363855383	4.95118572136245	0.200120787487802	0.54991767540425	0.79819307525845
Merged-chr11-120539163-4	chr11	120539052	120539252	+	916.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008101)	TTS (NM_008101)	8425.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	4.36669863657666	4.66957509735008	4.31994628229644	4.20472308532561	4.68911114150557	4.71411373380098	4.77497989833486	4.53852110176992	0.646931762912518	0.0784588393743866	0.303198964538219
Merged-chr17-84187198-4	chr17	84187102	84187302	+	878.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001806, intron 1 of 1)	CpG	745.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	4.35511005764677	4.30338587297096	4.04435511873271	4.29794335085921	3.99297459550751	4.16831926086257	3.86910262263008	4.27162701746233	-0.457324147027168	0.271659471590163	0.583251143082263
Merged-chr11-20247211-1	chr11	20247111	20247311	+	743.75	f0_balb.idr	intron (NM_172260, intron 1 of 6)	intron (NM_172260, intron 1 of 6)	2213.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	3.76164562776196	3.47590066391777	3.30488785342712	3.20698039877686	2.81561861459115	2.88150957258628	2.84220044954479	3.12654166808765	-2.26303692363351	0.000692265461611901	0.0100417288143618
Merged-chr1-172513123-4	chr1	172513010	172513210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8020.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	5.93168776614406	5.67440439738211	6.16141088459223	6.16163830700239	6.74743296204804	6.76005539371107	6.9545224210982	6.1981563742674	1.0239164769857	0.000109019131717879	0.00218157795236067
Merged-chr14-31397287-2	chr14	31397187	31397387	+	843.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	20390.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	3.42944748538123	3.15496548149032	3.17624368249927	3.11537735336943	2.92261431089515	3.16939627396342	2.85174501892561	2.85862374263794	-1.11312973013069	0.0672724627032164	0.276752029995885
Merged-chr11-21265615-4	chr11	21265525	21265725	+	793.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290628, intron 3 of 22)	intron (NM_001290628, intron 3 of 22)	26593.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	4.30773310256246	4.44212176245832	4.25935123553995	4.43145901287936	4.65985235320395	4.53115043201248	4.72871664210407	4.74857449583375	0.667028197885941	0.0620939349365912	0.263553022948815
Merged-chr11-76771416-4	chr11	76771323	76771523	+	870.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7845.0	NM_001356321	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	3.90175642089748	4.24477795630032	4.81281120617383	4.60526092298079	4.21374937412047	4.34877767881191	3.76421903882904	4.43439753834215	-0.534986646425625	0.265388513244288	0.577001515467012
Merged-chr8-56293450-4	chr8	56293350	56293550	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1102.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	5.20938354109047	4.84142341517901	5.70694148999613	6.08239796070582	5.09893555913318	5.28482213274089	5.3996880055261	5.55807669555589	-0.379783797956559	0.317695358542697	0.629592752581639
Merged-chr17-83563991-4	chr17	83563892	83564092	+	998.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49659.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	5.1560933047225	5.30930575184038	5.22082838198307	5.52344601841051	4.8962769321428	5.29862884281377	4.95813382238604	5.33589528087062	-0.367515829528523	0.246088280012309	0.557347514413776
Merged-chr2-167959601-2	chr2	167959501	167959701	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	27274.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	3.00371829889537	3.00765395982015	3.00408406300643	3.36627357475306	2.79991202698448	2.76385971711633	3.0518845666002	3.11822971273864	-0.737038510669547	0.245000740740022	0.556141241317481
Merged-chr17-4997424-2	chr17	4997324	4997524	+	929.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 1 of 19)	intron (NM_001085355, intron 1 of 19)	2350.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	3.1351249142	3.07694857765451	3.30053984953916	3.01031369442783	3.22856053159242	3.36122528289751	2.93737141944888	2.80288279114364	-0.106125042995441	0.861956857075073	0.947920819630224
Merged-chr19-21644185-3	chr19	21644113	21644313	+	811.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025423, intron 1 of 3)	intron (NM_025423, intron 1 of 3)	8578.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	3.23580716631171	3.07150418967264	2.9774104820357	3.26368286031475	3.17027251198419	3.34956184648586	3.16471690574231	3.67623839426483	0.746963627672635	0.193807721743915	0.494091684312683
Merged-chr10-99171490-3	chr10	99171364	99171564	+	914.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	63329.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	3.44678094402651	3.17388517953204	3.3416392418409	3.31653752194822	3.21705632887549	3.20909021650422	3.32870453982237	3.39374229782677	-0.122946036815176	0.816060627107862	0.929190254316708
Merged-chr7-59230584-4	chr7	59230466	59230666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033962, intron 1 of 10)	intron (NM_001033962, intron 1 of 10)	1816.0	NM_173010	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	5.53742401947604	5.0848296220115	5.56575163834489	5.97953356536173	5.25752790129417	5.79343073817176	5.51045419529341	5.95362483148546	0.0893411006807089	0.791938666131814	0.919401124049459
Merged-chr9-21936931-4	chr9	21936831	21937031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290299)	promoter-TSS (NM_001290299)	-79.0	NM_001290299	235044.0	Mm.277521	NM_144935	ENSMUSG00000040563	Plppr2	Lppr2|PRG-4	phospholipid phosphatase related 2	protein-coding	7.34945778679226	7.84447662989725	7.19712767148288	7.38932297880466	7.57607717883448	7.33941421070136	7.45971200899418	7.41584954040215	-0.0219546140137025	0.915208236064393	0.968505352722599
Merged-chr3-132064166-4	chr3	132064068	132064268	+	935.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21124.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	4.44815603313149	4.41103986976493	4.35867156688447	5.24833636798156	4.3116677305528	4.53525694961724	4.59044159366122	4.25931139676892	-0.593752543250305	0.177845760363987	0.473512507553984
Merged-chr19-23125426-4	chr19	23125322	23125522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15804.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	6.67411516369077	6.28925281295278	6.43960749570495	6.68289317022973	6.47005485044849	6.34882710164079	6.47366536587635	6.36394439387971	-0.178561799561341	0.422674666184011	0.714868700610295
Merged-chr6-124904248-4	chr6	124904142	124904342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008479)	TTS (NM_008479)	7463.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	5.74930062930076	5.60746781412448	5.77392218776849	5.54960043898641	5.66267846116507	5.79982113716825	5.39928763504725	5.74622691424456	-0.00521253039195594	0.98440858428231	0.994312737627793
Merged-chr11-101226341-4	chr11	101226233	101226433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007970, intron 1 of 20)	CpG	130.0	NM_007970	14055.0	Mm.5027	NM_007970	ENSMUSG00000006920	Ezh1	ENX-2	enhancer of zeste 1 polycomb repressive complex 2 subunit	protein-coding	5.6850102810037	5.86081888155891	5.73646036496748	5.64096829252645	5.58105440114733	5.95905708334666	5.77901465349307	5.70744477002538	0.0427898617664014	0.868985853074445	0.950890741040292
Merged-chr16-37654466-4	chr16	37654358	37654558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026610)	promoter-TSS (NM_026610)	-90.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	8.21950499963248	8.09614151772248	7.74404848845551	7.75245721548163	7.9891140999804	8.04773347954192	8.17633004230685	7.87974101641207	0.0805239791263651	0.667676352442068	0.862592523649587
Merged-chr5-72225293-4	chr5	72225211	72225411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	21968.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	6.55872123022235	6.04052002278706	6.62007235017616	6.73439875154469	6.22972167973449	6.25546017627884	6.43067797588895	6.2417392766524	-0.344424882473556	0.164420328562375	0.454619685613227
Merged-chr11-70002081-2	chr11	70001981	70002181	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007888, intron 1 of 14)	B3|SINE|B2	1455.0	NM_007888	13543.0	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	3.57310566463193	3.44019860556843	3.27404187896502	3.24493364754419	3.85061731161094	3.69134060978854	3.66073981259216	3.62399440953056	1.09098024575134	0.0259615276816762	0.152342586879969
Merged-chr2-124690573-4	chr2	124690464	124690664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	36983.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	7.43947204096852	7.27440933785022	7.8386724594968	8.09396863604338	7.2095840981954	7.1523332127937	7.77197146459224	7.40597305077025	-0.401028941047455	0.103823200958605	0.35414921268187
Merged-chr1-86234019-4	chr1	86233936	86234136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	-69185.0	NM_145222	227327.0	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	5.29388528830498	5.32818846802178	5.5431589445083	6.00259508147669	5.07955242756169	5.04686077801833	5.10742702818946	5.02087358399162	-0.964945343659809	0.00321089030005996	0.0336578210970392
Merged-chr11-106779552-4	chr11	106779476	106779676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027785)	promoter-TSS (NR_027785)	-39.0	NM_015810	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	7.19205150899243	7.57469482859543	6.46615921080773	6.83199357386428	7.21680813755557	7.43471359890759	7.29268973341977	7.10844186031752	0.252464929103342	0.333103304263713	0.64399149963087
Merged-chr8-37049538-3	chr8	37049431	37049631	+	758.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	-25293.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	3.80570125490995	3.82939341255389	4.20010297465197	4.39952653005146	3.60397835758022	3.43188380304905	3.5700574059584	3.58126684609543	-1.64089333355915	0.00132764671265956	0.0169355851900349
Merged-chr4-94979669-3	chr4	94979585	94979785	+	883.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177239)	promoter-TSS (NM_177239)	-585.0	NM_177239	320713.0	Mm.208868	NM_177239	ENSMUSG00000062627	Mysm1	C130067A03Rik|C530050H10Rik	myb-like, SWIRM and MPN domains 1	protein-coding	3.7014465805953	3.73905113931164	3.70196190544636	3.57336695008846	3.75704572372899	3.97303217199256	3.51949855758245	3.84973906330009	0.327928811459118	0.481415974224049	0.756601212877503
Merged-chr1-178527327-2	chr1	178527227	178527427	+	804.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1798.0	NM_001161665	269152.0	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	3.4264438322512	3.25938913496656	3.36814414498938	3.63418143404459	3.62928213009178	3.48114259389325	3.57376466613598	3.58650206945848	0.415537183185738	0.415754986787515	0.709886482687489
Merged-chr9-59653555-4	chr9	59653448	59653648	+	946.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2820.0	NM_001253883	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	5.00921552326006	4.98540989264829	4.78930592898139	4.98863678939103	5.1177044430476	5.30936663075135	4.64201537879757	5.03996149092718	0.193995219088008	0.559721178532969	0.803989779751616
Merged-chr11-95309730-4	chr11	95309622	95309822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155298)	promoter-TSS (NR_155298)	524.0	NM_001195004	217127.0	Mm.90213	NM_177619	ENSMUSG00000038909	Kat7	Hbo1|Hboa|Myst2	K(lysine) acetyltransferase 7	protein-coding	8.21456605680429	8.46173076740979	8.18012016537692	8.05583671493089	8.16021265885196	8.12571246354426	8.22320950288744	8.15643745211832	-0.0838398109706094	0.613342068228182	0.833250529002088
Merged-chr5-43866779-4	chr5	43866647	43866847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2062.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	6.51123956732267	6.40087328577161	6.47996259932003	6.34381005048313	6.30897303648909	6.58809627193342	6.54120507103864	5.9294377857889	-0.0978510911920347	0.683844934872396	0.87046260876057
Merged-chr12-37241761-4	chr12	37241665	37241865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178767, exon 1 of 13)	5' UTR (NM_178767, exon 1 of 13)	126.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	8.14193037694393	8.1069098459168	7.78837508942292	8.03900213223512	8.30200439506379	8.38711140271899	8.24442771683168	8.1254548793987	0.307447107538289	0.0642831354338384	0.269435038569791
Merged-chr5-24918655-1	chr5	24918555	24918755	+	654.5	f0_balb.idr	intron (NM_145401, intron 4 of 15)	CT-rich|Low_complexity|Low_complexity	-10146.0	NM_001170555	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	3.36943280701617	3.23433316183214	3.09514582594971	3.16441427361217	3.09557731249219	3.32474274932784	2.74178583715587	3.03099118792365	-0.609095353921075	0.321579794578226	0.633215694929564
Merged-chr1-135259259-4	chr1	135259182	135259382	+	889.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163131)	promoter-TSS (NM_001163131)	-810.0	NM_007921	13710.0	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	4.02215160422933	4.24970148477237	3.91899936153664	4.00417644445513	4.19096451116448	4.37703710632927	4.14689765373598	4.11691384373558	0.402186296829779	0.323800908951109	0.635324498514402
Merged-chr2-120099111-4	chr2	120099006	120099206	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 4 of 5)	intron (NM_133838, intron 4 of 5)	55469.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	5.25259024302382	5.23535699619235	5.43571534936457	5.99815481937443	5.51947087646067	5.3641258463597	5.0171888702033	5.51398148055512	-0.296665522509148	0.385208049918512	0.686669766720506
Merged-chr4-149705541-4	chr4	149705443	149705643	+	901.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3914.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	4.62015473855366	4.34990432210146	4.5811808681498	4.78658274454288	4.61416688348677	4.62873804946088	4.71050371979532	4.5373047210446	0.0347141504855094	0.923243518840186	0.971591738656735
Merged-chr6-114644732-4	chr6	114644623	114644823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028835, intron 1 of 18)	intron (NM_028835, intron 1 of 18)	1626.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	6.75871355219417	6.84550685589752	6.49069777953664	6.70829199278166	6.82947000461496	6.66807953628757	6.84715047963381	6.69677321786743	0.0807100201806201	0.693034636900983	0.875211530726656
Merged-chr13-9382029-4	chr13	9381936	9382136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	105511.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	6.15223662930843	5.64887018106221	5.38960684691273	5.85080480946176	5.69435906363947	5.39876958770549	5.71957056045612	5.86015619527353	-0.186502240701187	0.526817131291252	0.78394239517028
Merged-chr17-63400862-3	chr17	63400778	63400978	+	712.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 4 of 8)	Lx7|LINE|L1	-87905.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	2.77016319809436	3.07346087156573	3.06074079530215	2.83839401686062	3.576807876477	3.17338066789899	3.53061633099595	3.35156610310459	1.88019669398503	0.00118313541197634	0.01538443468927
Merged-chr1-156040846-4	chr1	156040755	156040955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358627)	promoter-TSS (NM_001358627)	-6.0	NM_001160181	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	7.35203098187077	7.15900850880811	6.97261015564365	7.38533977670625	7.37932567493506	7.43726252426697	7.04041754372328	7.39694082368982	0.118327369529238	0.55675449414849	0.802235069284239
Merged-chr19-6046124-2	chr19	6046040	6046240	+	805.25	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_028769)	promoter-TSS (NM_028769)	-436.0	NM_028769	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	3.50446952413052	3.65850020859123	3.50492983780443	3.15455978314515	3.70673863842873	3.68108483833356	3.65503839059963	3.98701231946724	0.974914748349661	0.0538874049675373	0.242302690978164
Merged-chr14-20836200-3	chr14	20836095	20836295	+	930.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008873)	promoter-TSS (NM_008873)	-467.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	3.38636710034031	3.32075866789958	3.59967320895829	3.47413430440386	3.37297259430973	3.61321192573411	3.31588957400835	3.44154386029404	-0.0431332698819816	0.932500235474148	0.975664181402534
Merged-chr7-143626431-2	chr7	143626331	143626531	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175649, intron 1 of 7)	intron (NM_175649, intron 1 of 7)	1414.0	NM_175649	244237.0	Mm.247498	NM_175649	ENSMUSG00000045362	Tnfrsf26	Tnfrh3|Tnfrsf24	tumor necrosis factor receptor superfamily, member 26	protein-coding	2.74132007236788	2.72213619660917	2.74160437151824	3.06158183904088	2.78454393879572	2.97553652721886	2.85866674782368	2.86740767133148	0.14330844490179	0.822807076525778	0.932185203682946
Merged-chr14-17756988-4	chr14	17756870	17757070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	96010.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	6.73525252936335	6.84088875211676	7.09026152543576	7.08294146638286	6.60982104297486	6.69097516130223	6.61168185754907	6.32128251490856	-0.549765677707768	0.0106170322849486	0.0824290729723336
Merged-chr10-10457210-4	chr10	10457111	10457311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	15103.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	8.26527616687914	8.47867287849478	8.69952247520398	8.53704392774106	8.59389224337377	8.53603550016322	8.67239547243703	8.50851936018965	0.0935161935230887	0.559921193231755	0.804120626536794
Merged-chr11-46062041-4	chr11	46061945	46062145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291890, intron 2 of 22)	intron (NM_001291890, intron 2 of 22)	6061.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	6.44549731107689	6.49654185955414	6.33848028997287	6.38117457491878	6.60591127268522	6.58776880205533	6.52857734102312	6.52550562363592	0.218454529019585	0.289501573153616	0.601517859389756
Merged-chr17-28207725-4	chr17	28207634	28207834	+	981.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027185)	promoter-TSS (NM_027185)	-44.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	4.83916406097456	5.18991879829407	5.02105428434665	5.55532298613911	4.98686391799858	4.85377781976211	4.89206013860597	4.71469264055488	-0.644435435887147	0.0661533690689718	0.273986422492747
Merged-chr14-16380325-4	chr14	16380232	16380432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009409, intron 1 of 35)	intron (NM_009409, intron 1 of 35)	15126.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	5.57060347398192	5.74906580802006	6.03552794401532	5.81951085127768	5.54840731188369	5.85407815347402	5.70050728350519	5.53934792294802	-0.239508658867367	0.370349421123625	0.674524742103796
Merged-chr8-110618615-4	chr8	110618555	110618755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146216)	promoter-TSS (NM_146216)	88.0	NR_151675	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	6.69296284990737	6.95659426356908	6.8502880355145	6.63435348702571	6.48984351147872	6.88560740062957	6.8418125060937	6.68937558207614	-0.0809618206677549	0.707280461532928	0.882414568664592
Merged-chr2-152808737-4	chr2	152808674	152808874	+	786.729126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	RLTR31D_MM|LTR|ERVK	19715.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	3.96310805922352	4.10454331396709	3.96366003770681	4.09820468107132	4.30797905795754	4.08617994732243	4.04710573036443	4.36179599568261	0.439504780551644	0.282623900889381	0.594770434571737
Merged-chr17-26531757-4	chr17	26531629	26531829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23257.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	6.52628347028662	6.46157970718126	6.92269332661479	6.88199173285225	6.61217587406019	5.96627976131266	6.64920135928461	6.61854330330335	-0.321076677339559	0.206033263221451	0.509917998707916
Merged-chr8-34147171-4	chr8	34147031	34147231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026609)	promoter-TSS (NM_026609)	-392.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	5.71579559317404	5.98804947875849	5.74318055937676	6.2324893766636	6.18256440411538	5.84018752511864	5.90640498431601	5.97645071334702	0.050320724891295	0.851510468795149	0.944007369647391
Merged-chr15-64178664-1	chr15	64178564	64178764	+	788.333313	f0_balb.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	-118216.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.33294757342502	3.48850561928841	3.38951275348041	3.64911644899833	3.35382435335705	3.32373133517835	3.07245148858714	3.33165754791063	-0.724423535161416	0.182554468488275	0.479145709984439
Merged-chr11-82035455-4	chr11	82035373	82035573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011333)	promoter-TSS (NM_011333)	-104.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	7.41425341084675	7.73856738328975	7.46440965352992	7.52874507107264	7.47876041283994	7.65116321370464	7.63001113791027	7.41038979370687	-0.00152989688068873	0.993206596620242	0.997607455596305
Merged-chr6-37390502-4	chr6	37390398	37390598	+	764.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	51650.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	3.49652573880716	3.50990845462439	3.65246134954548	3.49868521619192	3.66717439751421	3.15100540433824	3.58783296724018	3.54896510417562	-0.0896725185144674	0.863011558308041	0.94845059534652
Merged-chr10-67318183-3	chr10	67318067	67318267	+	804.916687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32886.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	3.63675896899011	3.60920680602611	3.5175572777954	4.13048397097756	3.84791924319216	3.86564320215834	3.87893091754387	3.84579167078762	0.25310431625086	0.613451025547364	0.83329826063945
Merged-chr1-120256066-4	chr1	120255963	120256163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085409, intron 2 of 5)	intron (NM_001085409, intron 2 of 5)	9217.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	6.04424358617314	5.50493677004456	6.33114816727132	5.85299567346651	5.82124137775342	5.41389613311811	5.53392462913793	6.26112076299974	-0.254141634277869	0.432134568967236	0.722198138555674
Merged-chr2-84936643-4	chr2	84936546	84936746	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021398)	promoter-TSS (NM_021398)	0.0	NM_021398	58207.0	Mm.290729	NM_021398	ENSMUSG00000027074	Slc43a3	Eeg1|SEEEG-1	solute carrier family 43, member 3	protein-coding	4.75380722532966	4.69015362754807	5.24366603063914	5.0948424760177	4.70825983264349	5.00576921259214	4.77152016562807	5.06816431031323	-0.164238509503466	0.63821088951232	0.847061371191777
Merged-chr14-78924824-3	chr14	78924708	78924908	+	878.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027906, intron 4 of 44)	intron (NM_027906, intron 4 of 44)	75630.0	NM_173758	219189.0	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding	4.94820644706122	4.56160210875451	5.00583527106987	5.54773988748475	3.49691429305309	3.7449506405571	3.5990835358343	3.61017851370689	-4.30884787612026	1.12356941846688e-12	1.18656598868033e-10
Merged-chr8-84975003-4	chr8	84974905	84975105	+	987.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011563)	TTS (NM_011563)	3743.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	5.63416065925049	5.64108468661447	5.50453854255198	5.62641643964215	5.46580322687658	5.18819702557776	5.5304559288005	5.47288535908358	-0.310634369759256	0.25395635246443	0.565239500064592
Merged-chr10-99211143-4	chr10	99211065	99211265	+	932.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	-52066.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	4.54606284699758	5.18054885843447	5.0000372046669	4.97208141892361	5.55543941861784	5.06738680582467	4.75009131019126	5.18977805575108	0.450701090739333	0.215523795874924	0.521712540836435
Merged-chr16-19973654-4	chr16	19973540	19973740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183390, intron 1 of 6)	intron (NM_183390, intron 1 of 6)	9409.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	6.18567583464912	5.54614545439919	5.98374801371339	6.3362645624602	6.11818001118721	5.996294596919	5.95320268024693	5.97947869984497	-0.0666035442216446	0.809171407900228	0.926362488588753
Merged-chr7-19468505-4	chr7	19468406	19468606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10012.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	6.2852214103557	6.27843283249158	5.75076044291645	5.83236643986	6.17375387869575	6.59835101176814	6.43878703242853	6.08540733254841	0.431550697201903	0.105747431855135	0.358172564930604
Merged-chr10-79097687-4	chr10	79097580	79097780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359717)	promoter-TSS (NM_001359717)	-80.0	NM_001004362	72128.0	Mm.297854	NM_001004362	ENSMUSG00000060301	2610008E11Rik	-	RIKEN cDNA 2610008E11 gene	protein-coding	8.4196703803355	8.62867301670652	8.6028040201416	8.8549332190666	8.6137534743147	8.63015546440205	8.63859773197795	8.22758018340463	-0.128677074161523	0.467062797771294	0.746744449293867
Merged-chr1-106241624-3	chr1	106241531	106241731	+	856.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	69762.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	3.86043286571003	3.61686448219	3.99172888924828	3.85634785371389	3.27605997617487	3.26037869757435	3.84369130606077	3.66062348907941	-0.955443709645773	0.0738199740159723	0.292677097447941
Merged-chr8-57463018-4	chr8	57462922	57463122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009136, intron 1 of 2)	intron (NM_009136, intron 1 of 2)	7099.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	6.54845235940731	6.09526380769958	6.58079314916538	6.83541282277002	6.28439603446522	6.29965227690883	6.43497295704655	6.52905088767725	-0.244300882275288	0.326286591704993	0.637829440170333
Merged-chr9-44335152-4	chr9	44335052	44335252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010436, exon 1 of 1)	exon (NM_010436, exon 1 of 1)	437.0	NM_010436	15270.0	Mm.245931	NM_010436	ENSMUSG00000049932	H2afx	AW228881|H2A.X|H2ax|Hist5-2ax|gammaH2ax	H2A histone family, member X	protein-coding	5.29887354868343	5.33285737361802	4.91198858644408	5.01064493863092	5.62718628931617	5.47432086215145	5.21153894360203	5.63993464875417	0.64676700471022	0.0326476373350516	0.17702644761725
Merged-chr11-51935852-2	chr11	51935752	51935952	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31779.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	3.0270513807328	3.10498377505841	3.09333855339411	3.05108756357537	3.24575353915645	3.3289556617117	3.41662888837861	3.42953869560409	1.0766230017603	0.0434724368141149	0.212131565735569
Merged-chr3-65516013-4	chr3	65515908	65516108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12439.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	6.95403771575775	6.90116913475216	6.52284855367895	7.00119016487888	6.79701612562167	6.78294569103356	6.47229009252983	6.35319958818525	-0.348387297537018	0.129199806455234	0.400031015863113
Merged-chr15-84981722-2	chr15	84981622	84981822	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	6249.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	3.50004075590843	4.11196216913024	3.69262009217124	4.12301759995617	4.13416353288097	4.03417804051469	3.94531532026416	4.14064404825043	0.448463658390747	0.353210135128063	0.660106772056838
Merged-chr4-66821976-1	chr4	66821876	66822076	+	662.0	f0_balb.idr	Intergenic	Intergenic	-5575.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	3.23851028045707	2.82172396160654	2.92539452111758	3.14313330497832	2.491293929714	2.77036916322967	2.72564503055585	2.58865072201776	-2.05165617019379	0.00434703369133425	0.0427845009838883
Merged-chr2-122150083-3	chr2	122149980	122150180	+	810.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_009735, intron 1 of 3)	intron (NM_009735, intron 1 of 3)	2393.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	3.29643954377379	3.24820941430042	3.58475823934407	3.2387627118816	3.67679721240333	3.80375153001536	3.46336687301996	3.58264953560621	0.986497836671705	0.0504858239058228	0.233108364151967
Merged-chr15-59735875-2	chr15	59735775	59735975	+	743.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	59084.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	3.37683141485265	3.2562844590545	3.26084908904247	3.20100797161372	3.37145601168084	3.54686367764526	3.41789336724361	3.37544542282178	0.562442284106935	0.26922510533761	0.580772632222867
Merged-chr2-25180016-2	chr2	25179916	25180116	+	827.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025980)	promoter-TSS (NM_025980)	-742.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	2.61803777603309	2.46956253250333	2.55763988303954	2.30180055464535	2.45301829193112	2.5989309435132	2.2764559524225	2.42577210664467	-0.237778060076553	0.742300384229839	0.898494026733066
Merged-chr6-72362521-4	chr6	72362428	72362628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331173)	promoter-TSS (NM_001331173)	-96.0	NM_001331173	66510.0	Mm.170023	NM_025607	ENSMUSG00000055850	Rnf181	1700047F16Rik|2500002L14Rik|6230415N01Rik|C77350	ring finger protein 181	protein-coding	8.430048581209	8.72116356896175	8.31355635399977	8.40363666149611	8.33245781958381	8.41600128988383	8.37167037210775	8.26236502423711	-0.165329444255118	0.311785697977186	0.623665218229603
Merged-chr2-153199307-4	chr2	153199191	153199391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 13 of 17)	intron (NM_133847, intron 13 of 17)	26150.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	6.90904816874845	7.07517766932975	6.69319229898388	6.90871241385253	6.80275011334432	7.00482816958436	7.12629800323008	7.11301354934939	0.145583741617926	0.474296369339602	0.75165330690546
Merged-chr5-87143314-4	chr5	87143215	87143415	+	920.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-2975.0	NM_009467	22238.0	Mm.291575	NM_009467	ENSMUSG00000054630	Ugt2b5	AI118071|M-1|Udpgt-3|Udpgt2b5|Ugt2b17	UDP glucuronosyltransferase 2 family, polypeptide B5	protein-coding	4.0072295485199	3.80492648018647	3.67424191613693	4.11163878813882	3.88739262346571	3.97395246092884	4.29185802971626	4.48894136651946	0.671052899142626	0.149938308269734	0.432360854406563
Merged-chr5-46347577-4	chr5	46347490	46347690	+	714.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-415181.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	3.47570916872145	3.45466096235488	3.41748215310399	3.67694092161193	3.64979561319633	3.53122967731453	3.51870524892085	3.77863162650684	0.325543725211945	0.509879102698674	0.774306608029494
Merged-chr1-86466088-4	chr1	86465982	86466182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	39753.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	5.48727620909144	5.13109689921272	4.74626761906161	5.33863893435877	4.9446771975816	5.20894771331158	5.60392190818524	5.45854159127989	0.203633853670099	0.556893748919337	0.802235069284239
Merged-chr15-77772966-4	chr15	77772881	77773081	+	911.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 25 of 40)	G-rich|Low_complexity|Low_complexity	-15971.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	4.68478123268693	4.07481838924252	4.24193011647187	4.62244187203393	4.52700634407069	4.41716037912538	4.35940969190772	4.28666042177384	-0.0810224549241848	0.841802368837287	0.93994803474123
Merged-chr6-120469911-4	chr6	120469766	120469966	+	961.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	6669.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	4.6639126777926	4.84265172925765	5.24298987212927	5.31993762559261	4.66864360838008	4.57634911109938	4.37543957758916	4.34093079892959	-1.15948086594527	0.00245670685754115	0.0273955722094504
Merged-chr11-55097873-4	chr11	55097731	55097931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010299)	promoter-TSS (NM_010299)	-154.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	8.55689080147765	8.64329723058117	8.2884292165888	8.18938961323693	8.46742303039792	8.7501658882931	8.51418278414977	8.38844605835552	0.134525727923941	0.452470671143443	0.73682017619124
Merged-chr4-129189794-4	chr4	129189702	129189902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029036)	promoter-TSS (NM_029036)	7.0	NM_134151	107271.0	Mm.145488	NM_134151	ENSMUSG00000028811	Yars	AL024047|AU018965	tyrosyl-tRNA synthetase	protein-coding	7.87314322319926	8.20652942183679	7.70150272130403	7.47081095941895	7.9047969747358	8.19078980269442	7.76871686657357	7.9265156062313	0.153620245342062	0.468604316856011	0.747803507343786
Merged-chr1-131934737-4	chr1	131934644	131934844	+	889.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175294, exon 7 of 7)	3' UTR (NM_175294, exon 7 of 7)	24286.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	4.04048563561898	4.20078287479526	4.46535385810874	4.34143311130326	4.11644440553827	3.75158999713648	4.20925225961788	4.13552681324988	-0.523965900859126	0.221697172444393	0.529820811087143
Merged-chr6-76513209-4	chr6	76513105	76513305	+	942.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-729272.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	5.56929479838329	5.83076029618582	6.09233473114017	6.51180512722534	5.03204866287853	5.10931872745418	4.8531071367856	5.26452298920538	-1.71933483174627	2.34064086473023e-07	9.27641849168334e-06
Merged-chr13-117242254-4	chr13	117242157	117242357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010330, intron 2 of 8)	intron (NM_010330, intron 2 of 8)	21684.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	6.68706516171548	6.6040219937856	7.02382847820709	6.95309353116451	6.47373712401338	6.25121001586342	6.5302581742745	6.60720621144502	-0.517316923369134	0.0198963153737458	0.127635798609275
Merged-chr16-95836198-4	chr16	95836119	95836319	+	958.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040485, intron 3 of 3)	intron (NR_040485, intron 3 of 3)	62494.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	5.05917337286765	5.23940180927337	4.95008596617713	4.22832379529362	5.42513204044021	5.43004297529413	5.65614443006504	5.25163354188371	1.0000844952312	0.00695849956513668	0.0606433765671008
Merged-chr3-136761767-4	chr3	136761632	136761832	+	750.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	91666.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	3.75142284163688	3.89154657223461	3.64395983656706	3.15050354259654	3.85615663393581	3.92488218547752	3.92609001734587	3.64193989346094	0.628889984327563	0.228132550490601	0.536996819053888
Merged-chr5-90414784-4	chr5	90414671	90414871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46099.0	NM_009654	11657.0	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	5.1866780784934	5.21619327378841	5.39276570035703	5.27287966268544	5.20205009721734	5.12009946403616	5.19333634878895	5.08485423086995	-0.212496628895542	0.465247648018449	0.745807997310006
Merged-chr4-141514465-4	chr4	141514358	141514558	+	952.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	24139.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	4.6255116682707	4.5711884144294	4.23092802163312	4.23979840414754	5.23746161017009	5.13809319364257	4.51671103727876	5.55370291320937	1.5107840544572	0.000114486382611828	0.00227188263260083
Merged-chr9-89211443-3	chr9	89211321	89211521	+	731.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359993)	promoter-TSS (NM_001359993)	37.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	3.16241687448931	3.38424470120785	3.10004825674559	3.0137753355372	3.12503006849701	3.27466971012779	3.37301315087323	3.33289083216166	0.413185119461117	0.453601674755853	0.737598830499322
Merged-chr2-158046514-4	chr2	158046426	158046626	+	950.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027434, intron 3 of 6)	intron (NM_027434, intron 3 of 6)	18029.0	NM_001291135	70470.0	Mm.290810	NM_027434	ENSMUSG00000027651	Rprd1b	2610304G08Rik|2810446G03Rik|Crept	regulation of nuclear pre-mRNA domain containing 1B	protein-coding	4.72408730397943	4.74788288942173	5.31097422777742	5.11866557290658	4.56096437499883	4.59768906437482	4.58038314921244	4.68192493901553	-0.832269196240853	0.0201121599432507	0.128541207919605
Merged-chr10-19078292-4	chr10	19078203	19078403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62893.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	7.31237548180858	7.34236043224275	7.04039658474944	6.42131596589022	6.80507588218465	6.95752691660952	6.67143268015818	6.2004306827345	-0.535290955728175	0.0580544135724806	0.253030101638363
Merged-chr13-93951167-2	chr13	93951067	93951267	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106629.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	3.23231088372458	2.86168071465033	3.13297192400022	2.82904198192867	2.77985284205106	2.88324796031151	2.6244610816	2.77406804890994	-1.15030079100598	0.0810091953555455	0.3087963110487
Merged-chr17-74123185-4	chr17	74123098	74123298	+	925.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75282.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	4.47842515366874	4.95335922169019	4.32731215503429	4.96834301254744	4.963333295141	4.70577101392924	4.79240799571355	5.34605029837178	0.498752478914685	0.205670089892071	0.509406965297798
Merged-chr16-4939566-3	chr16	4939459	4939659	+	911.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037666)	promoter-TSS (NR_037666)	26.0	NR_037666	100503704.0	Mm.480572	NR_037666	ENSMUSG00000097397	Gm16861	-	predicted gene, 16861	ncRNA	3.7529624154805	3.84009885823526	3.85906716827103	3.92064522884847	3.68479675424445	3.92758495856333	4.15239489964207	3.90648433277416	0.201841816395116	0.652720770684383	0.854764223296605
Merged-chr10-39418547-4	chr10	39418439	39418639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	48740.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	6.32449980922791	5.76332398203503	6.92037578344277	7.32105943831345	6.4583522611266	6.03062806308164	6.3841733033709	6.43018102098213	-0.559225192274838	0.103263663462529	0.353035749356358
Merged-chr11-94653873-4	chr11	94653749	94653949	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177752)	promoter-TSS (NM_177752)	58.0	NM_053161	94064.0	Mm.34951	NM_053161	ENSMUSG00000024414	Mrpl27	A630055F16Rik|D11Moh47|D18Ertd643e	mitochondrial ribosomal protein L27	protein-coding	5.18074521182652	5.10690088742863	4.97785051201324	4.57061876016912	5.48275633229527	5.35535888193285	5.02485222654601	5.35341730850937	0.677014929955772	0.0428243476223609	0.210423459851721
Merged-chr12-35579030-4	chr12	35578935	35579135	+	967.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44046.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	5.29675941399036	5.15694775225268	5.48569941934448	5.39295442223459	5.13046258487796	5.10802442079566	4.90719963015306	5.00215292840882	-0.55356768641335	0.0668770132519731	0.275795998045318
Merged-chr17-8807553-2	chr17	8807454	8807654	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	5809.0	NM_011866	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	3.06975250245919	3.2084565136629	3.34209887421994	3.14732422204444	3.03994702967212	2.98105296162991	2.99814590552479	3.00664716518759	-0.759513344581039	0.186888744552701	0.485112429701521
Merged-chr8-122611537-4	chr8	122611425	122611625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021502)	promoter-TSS (NM_021502)	-38.0	NM_016722	50917.0	Mm.1786	NM_016722	ENSMUSG00000015027	Galns	mFLJ00319	galactosamine (N-acetyl)-6-sulfate sulfatase	protein-coding	8.24493717364513	8.41624341239106	8.12156671415655	7.89105621708197	7.89456131203524	8.16064721193178	8.22420638180572	7.85302505412842	-0.17574238917507	0.357716588052151	0.663837540417421
Merged-chr14-73390403-4	chr14	73390305	73390505	+	887.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-5116.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	3.96473069772864	3.94209134062167	4.10778996312712	3.98112754684684	4.11656757976537	3.92519728899857	4.17539921476244	4.10527168982954	0.237298862792074	0.564406944520524	0.806779626043352
Merged-chr7-80294335-4	chr7	80294244	80294444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285998)	promoter-TSS (NM_001285998)	-107.0	NM_145150	233406.0	Mm.227274	NM_145150	ENSMUSG00000038943	Prc1	D7Ertd348e	protein regulator of cytokinesis 1	protein-coding	8.1334077819682	8.38862043736558	7.6627489626452	8.13932182238621	8.28420248546309	8.29990750833779	8.3888189312944	7.97694439263361	0.174531751859706	0.383182396003244	0.685091024076536
Merged-chr6-131247424-4	chr6	131247337	131247537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170851)	promoter-TSS (NM_001170851)	-75.0	NM_008462	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	7.42221046408915	7.41791381652915	7.23984273046034	7.6217135175168	7.28720976072344	7.31419426690549	7.18155393397978	6.99329600794733	-0.324274205490829	0.0922305843203842	0.332162566488162
Merged-chr7-45370689-4	chr7	45370574	45370774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011698)	promoter-TSS (NM_011698)	-110.0	NM_011698	22342.0	Mm.20472	NM_011698	ENSMUSG00000003872	Lin7b	LIN-7B|MALS-2|Veli2	lin-7 homolog B (C. elegans)	protein-coding	6.06381171301547	5.77977753915137	5.38907439033456	5.77029721318785	5.59625054899278	5.79618133837056	5.67015447329427	5.64353589329395	-0.163708161443001	0.552493109161644	0.799724417703446
Merged-chr9-50670893-3	chr9	50670784	50670984	+	906.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178118, intron 17 of 19)	B3|SINE|B2	-11104.0	NM_145614	235339.0	Mm.285076	NM_145614	ENSMUSG00000000168	Dlat	6332404G05Rik|DLTA|PDC-E2	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	protein-coding	3.76635493819461	3.80167260082967	3.65538192566788	3.46809003970568	3.9168312928512	3.77502769879517	4.22952871717945	3.96233628326052	0.908794150360079	0.0477453514848702	0.22539238449009
Merged-chr12-4917313-4	chr12	4917217	4917417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099628)	promoter-TSS (NM_001099628)	-36.0	NM_001099628	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	7.84515620001811	7.76012585352859	7.94638894366674	7.72670208885039	7.83820013168592	7.76943116150293	7.98768205182377	7.72445597293479	0.0237988025080326	0.887067120505493	0.957632641284625
Merged-chr19-8997740-3	chr19	8997632	8997832	+	906.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039959, intron 1 of 5)	intron (NM_001039959, intron 1 of 5)	8448.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	4.64853548481976	4.21070708719222	4.51532445815936	4.46371192214992	3.85011513328682	3.95090512464275	3.98049947897642	3.76402472772368	-1.5246328824691	0.000416199490305042	0.00664415200729634
Merged-chr11-75461465-4	chr11	75461386	75461586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030711)	promoter-TSS (NR_030711)	-53.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	9.03443278207779	9.30995437697926	9.20956946716095	8.79654166124241	9.23790972266872	9.56479487151502	9.26059796116053	8.99816490650706	0.223944543725165	0.22549036605915	0.533926073971919
Merged-chr4-132639004-4	chr4	132638921	132639121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_211357)	promoter-TSS (NM_211357)	-25.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	6.60295531495709	6.88175795492148	6.58754419667564	6.69911282803798	7.02270852419669	6.96419729056053	6.99718002090052	6.81105680054279	0.354884605981306	0.0756352568169765	0.297110482614546
Merged-chr14-76913998-3	chr14	76913872	76914072	+	748.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122645.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	3.24858854712995	3.29251306711497	3.47138931206866	3.78084249587891	3.0995741847052	3.01344007299711	3.35192084866074	3.41737289847689	-0.891361467265981	0.129905155501027	0.401218710433729
Merged-chr2-155541261-4	chr2	155541139	155541339	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019811, intron 2 of 17)	MIRc|SINE|MIR	15691.0	NR_040613	74945.0	Mm.401956	NR_040613	ENSMUSG00000086529	Acss2os	4930471I20Rik	acyl-CoA synthetase short-chain family member 2, opposite strand	ncRNA	4.59752811019123	4.70469722209576	5.02141417701188	5.24936055024431	4.75900341172289	4.28433389033365	4.44659851538216	4.59530947704913	-0.823825188168629	0.035328897302872	0.186465637039977
Merged-chr7-25120609-4	chr7	25120499	25120699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163555, intron 4 of 13)	intron (NM_001163555, intron 4 of 13)	11861.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	7.50440008223663	7.64072967834067	7.57088495121324	7.38244343044008	7.74733056351104	8.07390663466655	7.80141453691449	7.90521157045211	0.473945488881378	0.00704621040805797	0.0611562261474404
Merged-chr7-81209209-3	chr7	81209151	81209351	+	810.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4553.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	2.74480492019787	2.99518474725359	2.74506330152862	2.90900591076892	2.95305413690046	2.987279038253	2.99065655271143	3.16386700003996	0.706929165435151	0.241060389130944	0.551619163882296
Merged-chr17-87260968-3	chr17	87260816	87261016	+	975.4166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139295, intron 1 of 3)	ORR1A2-int|LTR|ERVL-MaLR	5031.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	3.65821797177332	3.53097547562111	4.28196785021948	3.34453589947153	4.29007323727074	3.84954860137767	4.73392803201657	4.53998891257673	1.65248754495795	0.00181394849903952	0.0216745073381121
Merged-chr4-126137978-3	chr4	126137893	126138093	+	915.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 10 of 10)	intron (NM_028800, intron 10 of 10)	-10010.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	4.38702533967892	4.82988305105766	4.53917504540689	3.86908350748243	4.16761341378911	3.97192757145443	4.05267098678955	3.84494774069251	-1.06641237180526	0.0258316820320398	0.151793386886697
Merged-chr5-29892525-4	chr5	29892414	29892614	+	950.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120600.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	4.85856259146664	4.7984147444435	4.9287150302403	4.8669311832077	4.85421155345081	4.62235006101446	4.9378865449668	4.78285190854368	-0.110486620712128	0.735212482332697	0.895431262597044
Merged-chr11-119227673-4	chr11	119227567	119227767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175430)	promoter-TSS (NM_175430)	832.0	NM_001347625	207592.0	Mm.205263	NM_172443	ENSMUSG00000039976	Tbc1d16	B930087K01|BC026530|Tcd1d16	TBC1 domain family, member 16	protein-coding	5.65087990019987	5.82283582581798	5.11278020617045	5.47004503124294	5.45837594973297	5.32874291563571	5.69380119393101	5.37693736068651	-0.115875975712655	0.701968548238793	0.879948527177235
Merged-chr4-104697965-3	chr4	104697875	104698075	+	858.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177259, intron 9 of 14)	intron (NM_177259, intron 9 of 14)	-68342.0	NM_133882	110382.0	Mm.87072	NM_133882	ENSMUSG00000029656	C8b	4930439B20Rik|AI595927	complement component 8, beta polypeptide	protein-coding	4.19249509408503	3.97695187650575	4.38971744913971	4.50912526033349	3.77299053494544	3.73265116028944	4.0867703203875	3.61093054155402	-1.29978629609572	0.00558498387440618	0.0515370109729677
Merged-chr13-52258636-4	chr13	52258549	52258749	+	858.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	161908.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	4.14146035657517	3.93081278137911	4.00927287883148	4.24688749343201	3.84811928242708	3.75036160203086	3.94499151858733	3.80533266263661	-0.71426206051932	0.103925529052318	0.354311487327088
Merged-chr8-69007227-4	chr8	69007137	69007337	+	853.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81499.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	4.29647932285631	3.65816097391845	4.2540165751102	4.30654118581109	4.11419662344794	4.02730029322474	4.47145381067827	4.45337790355942	0.296842586026992	0.514036743678912	0.776850822111233
Merged-chr16-30064171-4	chr16	30064052	30064252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1205.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	7.9129167193005	8.08176521252482	8.19059557054124	8.23290297945464	8.33263521285638	8.55870879328536	8.37246870765131	8.27271472245259	0.344322316972537	0.0371044722815183	0.192118951955058
Merged-chr10-8848748-1	chr10	8848648	8848848	+	600.0	f1_balb.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	37322.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.25772876845853	3.36200146442591	3.25816840273221	3.1013034668496	3.17089756689319	3.18958179047149	3.18950709432376	3.01341126326037	-0.379615242798494	0.494142281951884	0.764870142156206
Merged-chr6-47621761-2	chr6	47621661	47621861	+	595.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26731.0	NM_007971	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	2.69114322266913	2.86260442282047	2.89590491337391	3.17462906622771	3.11361560105698	3.00211526178472	2.94720670849862	2.95611657371267	0.321223357052131	0.613885336837243	0.833585997266986
Merged-chr3-122924318-4	chr3	122924229	122924429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046036)	promoter-TSS (NR_046036)	-68.0	NM_024461	67704.0	Mm.24219	NM_024461	ENSMUSG00000054091	1810037I17Rik	5730414I01Rik|Aln	RIKEN cDNA 1810037I17 gene	protein-coding	7.11364690221498	6.9199374971425	7.42974497853779	7.03950964547428	6.89388443765395	7.00838048693223	7.16794503124096	6.92344762165753	-0.182957093414519	0.376488150191736	0.679190359379999
Merged-chr12-106016829-3	chr12	106016725	106016925	+	969.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029843, intron 1 of 13)	intron (NM_001029843, intron 1 of 13)	6562.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	4.41926488454839	4.08210593657721	4.38125356518378	4.31570857026396	4.277396284073	4.03306794293569	4.05380328926111	4.06831246195097	-0.459454634409064	0.260768614649411	0.572612963817072
Merged-chr10-34282101-4	chr10	34281970	34282170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009433)	promoter-TSS (NM_009433)	-120.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	8.03911530621553	8.09193779361085	8.22218566928017	8.02817146172582	7.9761077288259	7.94184954413764	7.79749838655171	7.65743668361538	-0.312159338583162	0.0626987221028492	0.265313140750176
Merged-chr1-120073099-4	chr1	120072986	120073186	+	925.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019432, intron 1 of 1)	intron (NM_019432, intron 1 of 1)	694.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	4.70780424581465	4.32861939257531	4.43678063735913	4.40086089714486	4.61607859303166	4.65167466102687	4.37328757847202	4.47650802088695	0.154499985892108	0.674934582803107	0.86644892455821
Merged-chr9-31926035-4	chr9	31925946	31926146	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12761.0	NM_013800	12023.0	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	5.67153673213728	5.53084164559937	5.08508585549014	5.82382160455882	5.47365860524012	5.10952344571875	5.35645185692939	5.37949449681497	-0.399163888729061	0.20282018633057	0.505367754389162
Merged-chr10-43475593-2	chr10	43475493	43475693	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3547.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	3.06050360312692	3.28482420953787	3.12076845167366	3.02456757729552	2.84909468472584	2.97077601411249	3.27126498783758	3.11912600556017	-0.264009146707981	0.65463185967052	0.855659697629251
Merged-chr5-25007046-3	chr5	25006959	25007159	+	779.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 3 of 15)	intron (NM_145401, intron 3 of 15)	-11306.0	NM_001310480	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	3.40491651069382	3.0728086921008	3.35058232802119	3.41527091671274	3.04544583324004	3.34637706758192	3.2809850531292	3.60132919469348	0.0304913143696194	0.956911012323301	0.984757116793997
Merged-chr4-101716825-4	chr4	101716727	101716927	+	844.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122899)	promoter-TSS (NM_001122899)	-580.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	3.86956904674311	4.23952179506707	4.07363619697222	3.89002622002475	4.35080323975211	4.33409249197449	4.00849032147096	3.69217716869599	0.275700973656185	0.547977709475558	0.797149098360121
Merged-chr11-22851535-1	chr11	22851435	22851635	+	661.0	f0_balb.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	8200.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	3.40099400939014	3.70597334898497	3.34242248529102	3.38163455690576	3.58140065578602	3.39293245518587	3.59823297420202	3.27912484392487	0.0324523866000569	0.950236723806491	0.982218805887075
Merged-chr3-131862157-2	chr3	131862032	131862232	+	872.5	f0_c57.idr|f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-223160.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.10127194135327	2.65074099293246	2.85470015526566	2.92491447629016	3.05507445396989	3.0298980232237	3.19558708737969	3.09996977364301	0.844373310945517	0.163057948577112	0.452663873703988
Merged-chr1-176074791-3	chr1	176074665	176074865	+	907.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357846, intron 2 of 8)	intron (NM_001357846, intron 2 of 8)	139177.0	NM_001357845	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	3.39316374415015	3.51965248881399	3.44608291710148	3.72137462688311	2.95573119698513	3.0616493065804	3.01632735709464	3.2801210976153	-1.79491320783492	0.00238806224832516	0.0267647778475312
Merged-chr10-96075612-4	chr10	96075516	96075716	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134953.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	5.23587953971424	5.91382445812001	5.05785808014858	5.45464705728981	5.52123779690305	5.50920676517391	5.47933574946487	5.44794700501355	0.0448839534409585	0.886802658036545	0.957513044740158
Merged-chr18-15063000-2	chr18	15062900	15063100	+	683.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001142731, exon 1 of 5)	exon (NM_001142731, exon 1 of 5)	582.0	NM_001142731	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	2.94993946575699	2.83553728008921	2.8383483163666	2.73824348869636	2.62570136339758	2.53155869431741	2.82741943736408	2.50579221208884	-1.04596960442786	0.124655438071153	0.391979564696352
Merged-chr17-10856067-4	chr17	10855972	10856172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	15713.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	5.89796889578656	5.99074663302395	5.87470257032914	6.16934138646078	6.39590987173246	6.37223355924389	6.04723001800617	5.98755248700174	0.333689617671333	0.182130497777771	0.47878218634963
Merged-chr6-82044665-3	chr6	82044556	82044756	+	997.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	3028.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	4.93771498121287	4.83743733723467	5.2723597035916	5.8118767246902	3.64276729443085	4.0145720677753	3.7941078718573	3.80669029383759	-3.79549612181732	3.88358459368773e-13	4.53163389826392e-11
Merged-chr8-70375376-4	chr8	70375276	70375476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016685, intron 4 of 18)	CpG-14087	1828.0	NM_016685	12845.0	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	6.889129287843	6.98404086177504	6.6641516307191	6.89465102516548	6.79404127487841	6.85617264901393	6.63018162157654	6.34460796826376	-0.272939490214977	0.209548535958456	0.514046766302012
Merged-chr4-144971220-4	chr4	144971137	144971337	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78100.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	5.33178489359125	5.24987529501134	4.99189796970394	5.18405018084004	4.9535813397655	5.16650383975255	4.96794826281153	4.83806294173562	-0.40649126503796	0.190728534624049	0.490156564465653
Merged-chr7-66175969-4	chr7	66175863	66176063	+	970.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66448.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	4.07888306172737	4.2972071709564	4.52661977276135	4.44146290213236	4.69762280071187	4.14688487605903	4.6123479030091	4.22678991251758	0.241868269466478	0.55790406886791	0.802941013768505
Merged-chr15-39232894-3	chr15	39232795	39232995	+	867.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256383, intron 1 of 25)	MERV1_I-int|LTR|ERV1	34609.0	NM_053271	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	4.02097625177449	3.52023631941236	3.70748637232498	3.95748325992685	3.48535660605864	3.40478013588294	3.58729234024738	3.59932710713062	-0.946881404356197	0.0597633574203626	0.257827505777562
Merged-chr11-79528173-4	chr11	79528075	79528275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033711, exon 2 of 2)	5' UTR (NM_001033711, exon 2 of 2)	2434.0	NM_146023	101488212.0	Mm.439665	NM_146023	ENSMUSG00000070354	Evi2	Evi2a-evi2b|Gm21975	ecotropic viral integration site 2	protein-coding	7.44502096995306	7.7079014041209	7.31847396628758	7.39394234963386	7.08211895546339	7.2697884818088	7.29227440845496	7.08717343104242	-0.393531739214706	0.0388445085022121	0.197988776990974
Merged-chr13-102906300-8	chr13	102906200	102906400	+	971.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	146045.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	4.19479333159381	4.41502399343639	4.68888453158072	4.36887406513021	4.25360087665826	4.46642437002715	4.3622260835649	4.50302131544227	-0.0713880070830567	0.852572420852505	0.944576352517829
Merged-chr1-131481623-4	chr1	131481537	131481737	+	828.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	45724.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	4.36985958457714	4.55751540973592	4.67741027588782	4.3112738372847	4.37952162831744	4.40849544256499	4.16653321010056	4.23070463814443	-0.412629295667877	0.28806550605468	0.600012134008312
Merged-chr6-22474270-4	chr6	22474171	22474371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118190.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	5.66999227938056	5.54819698566998	5.84605530090363	6.35448209465345	6.01056964210497	5.9495253048131	5.71983940244833	5.58399080549032	-0.135828394283229	0.658114333739147	0.857677183558236
Merged-chr11-116643440-4	chr11	116643326	116643526	+	956.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10887.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	4.69262628146043	4.72352037396646	4.16520806681223	4.26216273485451	4.75575164797944	4.34683393986111	4.51909963965393	4.79394644640116	0.321246068304952	0.418505124513232	0.711949966908158
Merged-chr18-35562152-4	chr18	35562046	35562246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010771)	promoter-TSS (NM_010771)	-12.0	NM_010771	17184.0	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	7.79854163517734	7.84161089523532	7.72889027624551	7.60022254792543	7.86546728603542	7.93827401623899	7.82171259438907	7.70730760237152	0.126597539942775	0.450820719513898	0.735530015684777
Merged-chr7-13009261-4	chr7	13009145	13009345	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024699, intron 1 of 2)	intron (NM_001024699, intron 1 of 2)	607.0	NM_001024699	232879.0	Mm.279272	NM_001024699	ENSMUSG00000049600	Zbtb45	BB161562|Gm157|Zfp499	zinc finger and BTB domain containing 45	protein-coding	4.42690459245899	4.32015901123172	4.4700868963103	4.4670769944505	4.85089776064982	4.41905449925745	4.52990837405084	4.38093215404812	0.336427411134098	0.369916819626143	0.674099060526606
Merged-chr17-15705596-4	chr17	15705468	15705668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007690, intron 1 of 35)	intron (NM_007690, intron 1 of 35)	601.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	5.48160443044336	5.77109817987667	5.6903059328963	5.09805814793264	5.70045833163966	5.44586580388503	5.56242987225972	5.42102942296504	0.0417311268305325	0.891849849919835	0.95952862608333
Merged-chr8-106581662-4	chr8	106581562	106581762	+	916.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-5481.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	4.33861600689526	4.47106667529341	4.63787403137105	4.77765313752084	4.61382943756528	4.36786830674909	4.41219534812447	4.90687448876789	0.0331534284805862	0.931450881795854	0.975308419949524
Merged-chr19-6278302-4	chr19	6278196	6278396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 1 of 4)	intron (NM_010119, intron 1 of 4)	1400.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	8.01503399347704	8.15495982011708	8.13534792253803	7.74125926771609	7.73645022619307	8.03293545964809	8.13188969787009	7.19830006911356	-0.253405849724535	0.27212852829626	0.583692527214087
Merged-chr5-139345279-4	chr5	139345176	139345376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197980)	promoter-TSS (NM_197980)	-110.0	NM_197980	68033.0	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	6.58374099478759	7.19561353118755	6.68025487003689	6.67444576694171	6.76946948754905	6.77841096235416	6.83009157144259	6.56359932711237	-0.0956078420059336	0.677074483066177	0.867413330276592
Merged-chr11-4973441-3	chr11	4973349	4973549	+	844.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243043, intron 1 of 22)	intron (NM_001243043, intron 1 of 22)	-13375.0	NM_001355659	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	3.99159913536604	4.11885122594932	4.30335890802292	4.07080340076119	4.07237341720448	3.95254215485659	4.20281735295217	3.93860862759533	-0.19339598098097	0.642830504839944	0.84935134647267
Merged-chr2-119325642-2	chr2	119325542	119325742	+	617.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019454)	promoter-TSS (NM_019454)	-142.0	NM_019454	54485.0	Mm.143719	NM_019454	ENSMUSG00000027314	Dll4	Delta4	delta like canonical Notch ligand 4	protein-coding	3.5788947308621	3.48009936121498	3.36397927626545	3.07365692284124	3.38228233477972	3.4182615592185	3.40787530257403	3.57726276767537	0.247509396019325	0.643961456996084	0.850046908802106
Merged-chr11-89002485-6	chr11	89002436	89002636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	3133.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	4.86419064928156	4.6519589258551	5.16697295395929	4.87322962550266	5.35415790686371	4.84003954524719	4.8788976020969	5.22160912912781	0.402271891821238	0.239336224725303	0.549703033561985
Merged-chr19-32954448-4	chr19	32954342	32954542	+	955.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	196865.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	4.29361385482689	4.41725913564076	4.24682382491669	4.17461821724735	4.51306998642115	4.42254926645245	4.63437516231432	4.58177621428708	0.610215278972636	0.0963786823902119	0.340183389559302
Merged-chr2-122029022-4	chr2	122028985	122029185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256055, intron 2 of 7)	CpG-8471	502.0	NM_001256055	100042807.0	Mm.329403	NM_001256055	ENSMUSG00000043424	Eif3j2	Eif3j-2|Gm9781|eIF3 p35|eIF3j-B	eukaryotic translation initiation factor 3, subunit J2	protein-coding	5.37335485864438	5.63521987090018	5.82806887872231	5.51240129078448	5.37720718631582	5.61186933215539	6.00277998050155	6.10108488294854	0.345430425604309	0.25374704807771	0.565032649092237
Merged-chr2-181930874-4	chr2	181930761	181930961	+	958.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-60365.0	NM_001205282	672125.0	Mm.489571	NM_001205282	ENSMUSG00000098505	Gm14496	-	predicted gene 14496	protein-coding	6.01934082514432	5.7106683364998	6.32988817084325	5.20520985615047	5.35439110878878	5.64171286598265	5.60909862230432	6.75628402901571	0.132043860650789	0.827120948042275	0.933672322391225
Merged-chr19-57356452-3	chr19	57356421	57356621	+	855.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040316, intron 1 of 2)	B3|SINE|B2	4378.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	2.86778763312694	2.77519924094289	2.86813837530897	3.23504056896576	2.74886329351451	2.84575697895678	2.66559612865713	2.74001300377964	-0.978050799878793	0.139190590186874	0.414849904413086
Merged-chr1-93818353-4	chr1	93818250	93818450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025454, exon 8 of 8)	3' UTR (NM_025454, exon 8 of 8)	-6890.0	NM_178882	98314.0	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	5.69020160121732	5.62936421466912	5.61745213077654	5.6264174024276	5.33068390799122	5.30961080108186	5.45662858440537	5.53522046299926	-0.400752536353528	0.134191899420282	0.407825042139404
Merged-chr5-134229652-4	chr5	134229617	134229817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286037)	promoter-TSS (NM_001286037)	-92.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	6.66156950995264	6.64534389647261	6.60268579411685	6.19318566643897	6.53679474868744	6.74721018376443	6.40565428496306	6.34322437929344	-0.0113063924273657	0.96199329612973	0.986368781694296
Merged-chr6-134830857-2	chr6	134830775	134830975	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177687, intron 1 of 4)	intron (NM_177687, intron 1 of 4)	676.0	NM_177687	232430.0	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	3.28050030165783	3.12219996697543	3.34021820910168	3.32951883986677	3.16612627881564	3.51158261793115	3.53857936312157	3.73020778158712	0.784475195200099	0.148386365009279	0.430130539643714
Merged-chr4-150914560-4	chr4	150914481	150914681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4660.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	8.00577131521325	8.29995003972397	7.78336190279348	8.03783811399947	8.16066591496758	8.33870356616239	8.16964859610815	7.88745749266118	0.129506642252846	0.487198948335718	0.760600900973846
Merged-chr14-55713600-4	chr14	55713480	55713680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161715)	promoter-TSS (NM_001161715)	-88.0	NM_001161715	21816.0	Mm.41964	NM_019984	ENSMUSG00000022218	Tgm1	2310004J08Rik|Tgase1	transglutaminase 1, K polypeptide	protein-coding	6.36636964213956	6.2776226010979	6.09804798933837	6.21420301885232	6.36718832204092	6.48862152306612	6.08821641885975	6.17651991784683	0.0759026672846936	0.742333439111448	0.898494026733066
Merged-chr12-116054548-4	chr12	116054452	116054652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019565, intron 1 of 2)	intron (NM_019565, intron 1 of 2)	6828.0	NM_019565	56220.0	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	8.21273658441206	7.72114210091889	8.49034974675747	8.54421746343072	8.06146141613021	7.87109741277101	8.10337498469114	8.08616414944409	-0.320424446067556	0.129950309260152	0.401307347946913
Merged-chr11-114683949-4	chr11	114683860	114684060	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	ORR1B2|LTR|ERVL-MaLR	8492.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	5.85606726090375	6.00461238360056	5.30955811270785	5.33953455449733	6.38970490476507	6.12273366622118	5.95977659140105	5.92136291300508	0.742425457679885	0.0124769356368611	0.0922888705908904
Merged-chr17-35752785-4	chr17	35752684	35752884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19666.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	7.09377253305851	7.29499567503818	6.75371567635719	6.43578755679418	7.15406331501369	7.23655030033062	7.05921591019688	6.58845522454321	0.146186767338003	0.578443633587713	0.814701124579464
Merged-chr12-30584425-4	chr12	30584370	30584570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172049)	promoter-TSS (NM_172049)	27.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	7.35187450595239	7.34597809607332	7.80567493099638	7.41299341152737	7.02291612872769	7.34591285153755	7.15557709913412	7.27526434387785	-0.390305932715602	0.0521623051094805	0.237770620699502
Merged-chr2-91091586-4	chr2	91091444	91091644	+	801.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-5134.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	3.38454399591177	3.30566620500164	3.4856441952775	3.31298024863127	3.26982985940809	3.26419241658237	3.20473341594831	3.08909897350568	-0.594464439897979	0.269320402845794	0.58089018375688
Merged-chr11-21036371-4	chr11	21036288	21036488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54936.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	5.60232838104908	6.17032982361592	5.33372802727341	5.19884426246341	5.9234095950905	5.75236679584257	5.72649361592946	5.67785285862427	0.245403955978591	0.448827485807712	0.734061524604378
Merged-chr6-148354658-4	chr6	148354574	148354774	+	917.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003634)	promoter-TSS (NR_003634)	18.0	NR_003634	66184.0	Mm.391542	NM_025405	ENSMUSG00000063171	Rps4l	1110033J19Rik|AA407494|Rps4y2	ribosomal protein S4-like	pseudo	3.46520174329022	3.63307491163384	3.33958728074643	3.70063741592793	3.94482109868705	3.58057892706866	3.51136741193176	3.87218710279004	0.591543708249625	0.244704888951335	0.555808536831526
Merged-chr1-56971117-3	chr1	56970969	56971169	+	773.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024325)	promoter-TSS (NR_024325)	265.0	NM_139146	212712.0	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	2.86244540437759	3.00886639962236	2.66324710590464	2.63559937116295	2.77703285934082	2.90719143734188	2.91189393714705	2.9215408224473	0.37385000292947	0.551473400840649	0.798936033510473
Merged-chr17-6601680-4	chr17	6601589	6601789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166627)	promoter-TSS (NM_001166627)	18.0	NM_001166627	100040531.0	Mm.457987	NM_001166627	ENSMUSG00000095677	Dynlt1f	100040631|Dynlt1e	dynein light chain Tctex-type 1F	protein-coding	7.22536542697353	7.10067128987033	7.00455175234985	6.09693195584166	6.23734392247482	5.96105302764003	6.20317908186699	5.55257231149519	-1.32002937414715	3.68342737365488e-05	0.00086528936313327
Merged-chr12-85525202-2	chr12	85525102	85525302	+	865.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTRETN_Mm|LTR|ERVK	51312.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	2.98529773939639	2.76560447638114	2.86992433197247	2.34514420904924	2.72305059805893	2.91861661700062	2.59514292620702	2.92742758193747	0.16044476138705	0.821967408939523	0.931941461548501
Merged-chr3-14874617-4	chr3	14874618	14874818	+	826.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11180.0	NM_007606	12350.0	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	2.54813179864506	2.78223677666395	2.76036732566907	2.52178841305628	2.93601248414575	3.05392791275188	2.81389160848389	2.88350472562041	1.28508979509049	0.0421641478510475	0.208199922295506
Merged-chr17-48331064-3	chr17	48330963	48331163	+	688.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14901.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	3.32890430785721	3.05735340773737	3.11500171133506	3.22179859307926	2.84460776422489	3.16528233940363	2.91796158460618	2.99124866120099	-0.860792706421623	0.146617032860839	0.427055299038717
Merged-chr15-102625353-6	chr15	102625226	102625426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310070, exon 1 of 12)	5' UTR (NM_001310070, exon 1 of 12)	138.0	NM_001310070	223922.0	Mm.208714	NM_146065	ENSMUSG00000099083	Atf7	1110012F10Rik|9430065F09Rik|AI549878|C130020M04Rik	activating transcription factor 7	protein-coding	7.38561883993418	7.48677505373938	7.7980200605444	7.23493117406118	6.96283766116376	7.52378027258747	7.12270124586883	7.61650256441727	-0.212089176273352	0.357242983174783	0.663450889042078
Merged-chr6-39778677-4	chr6	39778589	39778789	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32247.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	5.95965210132024	5.29774629360326	5.47926598263151	6.2090756387071	4.90348749561699	5.27283156049509	5.06639918396974	5.41831839255256	-1.09787063081058	0.00147525378636826	0.0184122910511021
Merged-chr3-105704675-4	chr3	105704626	105704826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163356)	promoter-TSS (NM_001163356)	127.0	NM_175398	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	5.31925604412289	5.18287371484637	5.29415832615899	4.80483985317684	4.41333862394583	4.87841503758203	4.71890232771564	4.56460983583797	-1.0344642437687	0.00428227428768364	0.0423109385789886
Merged-chr5-100798655-4	chr5	100798537	100798737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081107)	promoter-TSS (NM_001081107)	-37.0	NM_001081107	191578.0	Mm.21469	NM_180984	ENSMUSG00000035266	Helq	AU021725|D430018E21Rik|Hel308	helicase, POLQ-like	protein-coding	5.42178123764334	5.63550099296422	5.53305375461742	5.5651691809634	5.31697194940128	5.16118480125215	5.39569482640511	5.58084853758707	-0.302853945985225	0.279480649430111	0.591495502480744
Merged-chr3-144605973-4	chr3	144605860	144606060	+	824.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	35533.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	3.66625543885368	3.78345092406713	3.90779866438696	3.49102850722507	3.89167014348686	3.48504704947417	3.75270075582094	3.43356254806436	-0.148607118106033	0.769192133268682	0.909730768720927
Merged-chr17-48267765-4	chr17	48267662	48267862	+	766.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033922, intron 2 of 5)	intron (NM_001033922, intron 2 of 5)	3467.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	5.09472428001483	5.12554820118725	4.36332199320164	4.63609545504718	5.09613800085245	4.8980009595176	4.57845047738364	4.5071134921269	-0.0793116994986996	0.843398572505524	0.940517052807233
Merged-chr18-39416597-3	chr18	39416489	39416689	+	978.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 6 of 7)	intron (NM_008173, intron 6 of 7)	70656.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	5.35134724391282	5.02873408559073	4.64316314930536	5.20457551370343	4.52842193436052	4.64083984120166	4.78235818837714	4.76337398340337	-0.837621195226421	0.0184057418259454	0.121181732152293
Merged-chr13-94322646-4	chr13	94322526	94322726	+	966.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	36297.0	NR_045619	328309.0	Mm.174191	NM_183205	ENSMUSG00000042857	Gm9776	A530089L17	predicted gene 9776	ncRNA	5.66139317321423	5.69865846709791	5.41923029066309	6.26848245230148	4.9061414118497	5.10329913119061	5.39199522295721	5.6335415863202	-0.9222653427104	0.00753210881840873	0.0643147761019092
Merged-chr10-99261119-4	chr10	99261042	99261242	+	888.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2089.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	4.08422894448463	3.79531136182609	3.66500493916699	3.71826745859969	3.77264307912086	3.83814504010867	3.47606343714968	3.66301155209913	-0.369158616024731	0.441625307079291	0.72857683932314
Merged-chr16-94648125-4	chr16	94648023	94648223	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	36704.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	5.3389733784874	5.53131773050547	4.90181085330848	4.68763456166125	5.42208856153834	5.42535341911041	5.36840635519843	5.01350905786563	0.313779712237047	0.375663226354427	0.678595291948235
Merged-chr15-50920107-4	chr15	50920020	50920220	+	872.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-30079.0	NM_032000	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	3.91885887546299	4.05176037057246	4.76960231855386	4.44305329623326	4.2228787313597	3.92266787318485	4.37425456431923	4.07862662540509	-0.433912588448183	0.347591499351656	0.655546119710951
Merged-chr1-21068659-3	chr1	21068566	21068766	+	672.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177409, intron 1 of 10)	intron (NM_177409, intron 1 of 10)	10559.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	3.52242518301689	3.23981150731486	3.72170494160555	3.20301073308449	3.66812762203822	3.26591112009616	3.45437796599466	3.71934658423909	0.375104435122259	0.491328341723402	0.762953445515293
Merged-chr2-11630175-3	chr2	11630081	11630281	+	811.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12611.0	NM_008367	16184.0	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	3.76127429893933	3.57540398193289	3.64610966466393	3.91509148558403	4.09561219611638	3.70299559156927	4.16363448165801	4.29446184305797	0.932200695441062	0.0481150199340886	0.226297013604367
Merged-chr11-44523954-4	chr11	44523864	44524064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 1 of 5)	intron (NM_001166553, intron 1 of 5)	4587.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	6.18418235528382	6.39465849942169	6.46828509824638	6.33615795841614	6.25555611877776	6.07507672454557	5.96223665796136	6.05589637487666	-0.379245240333302	0.100671654294631	0.348323336624419
Merged-chr19-15999487-3	chr19	15999393	15999593	+	772.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045355, intron 2 of 2)	L1_Rod|LINE|L1	14418.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	3.01754965277394	2.79734751415698	2.942124533634	3.03483858640499	4.00659615909222	3.40382882267028	3.63756866502339	3.60599891969074	2.63686784412123	2.75871108258852e-05	0.000676178705742315
Merged-chr6-8691426-4	chr6	8691341	8691541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252266, intron 5 of 11)	intron (NM_001252266, intron 5 of 11)	67017.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	7.02746696098785	6.99967050673907	6.61536265788651	7.4414066132318	7.34849852511181	7.03136644647965	7.47604722100792	7.18856734176923	0.27598563078764	0.245931583425704	0.557134442287021
Merged-chr15-96599080-3	chr15	96598979	96599179	+	874.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166456, intron 4 of 15)	intron (NM_001166456, intron 4 of 15)	42883.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	3.81368380138543	4.36278121963354	3.92004039800352	4.01606667667285	3.79785087964506	3.69201993447617	3.90374799476845	4.27013933430333	-0.308407848615609	0.513426635770206	0.77646733267772
Merged-chr17-27856452-4	chr17	27856330	27856530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080769)	promoter-TSS (NM_001080769)	-77.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	6.49259698697759	6.50681078346701	6.01169955610341	6.13949680370861	6.24004322365978	6.46108526077575	6.3781535406796	6.44013655660322	0.117134731494099	0.623740259424902	0.839108068902005
Merged-chr11-114680463-4	chr11	114680377	114680577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	5009.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	5.64372874698036	5.35538924799357	5.38723286653565	5.55539831775544	5.88378329012929	5.36374257542271	6.16824159058137	5.81000498307545	0.580441705495176	0.0460919114626853	0.220408207322975
Merged-chr6-148896989-3	chr6	148896889	148897089	+	719.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301351)	promoter-TSS (NM_001301351)	-752.0	NM_181541	232560.0	Mm.150568	NM_181541	ENSMUSG00000030309	Caprin2	C1qdc1|Eeg1|rng140	caprin family member 2	protein-coding	3.43548233179913	3.50541310116601	3.64789688898459	3.43379042886925	3.47757927822753	3.71421943274979	3.53216735920025	3.31447994940052	0.0373746309479224	0.940483948879076	0.978622053353546
Merged-chr6-48086131-4	chr6	48086008	48086208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362062, intron 1 of 5)	CpG	485.0	NM_001347142	69228.0	Mm.207555	NM_001163475	ENSMUSG00000057691	Zfp746	2810407L07Rik|AI317225|Znf746	zinc finger protein 746	protein-coding	5.02689719030514	4.99662767699058	5.70894990669317	5.41988525629083	5.27368956528587	5.0911186217641	5.38656738901166	5.56615059939211	0.0284736805376597	0.931138742661832	0.975254729027921
Merged-chr4-154911393-4	chr4	154911307	154911507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12364.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	8.41842365591211	8.58424822222478	8.2716450511252	8.23176583679626	8.46809057959744	8.53385726601129	8.544836804764	8.33971993656026	0.117390718339535	0.470355549195355	0.749078941154353
Merged-chr15-27215920-4	chr15	27215808	27216008	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-250769.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	4.92271417106038	4.92829113885732	4.92351833039349	5.43220173303905	5.25177315787401	5.13559934194941	5.1677870854272	4.99319312683458	0.0864901202799356	0.796167751082934	0.921052599307061
Merged-chr17-87044588-4	chr17	87044508	87044708	+	992.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19047.0	NM_019936	56724.0	Mm.109329	NM_019936	ENSMUSG00000024146	Cript	1200020A08Rik|AA589469	cysteine-rich PDZ-binding protein	protein-coding	4.70561068057769	5.41257317512249	5.20792051205719	5.01783043012439	5.61138585487148	5.31805639763982	5.43979689266269	5.29681013567027	0.579413645951249	0.0689340703793761	0.28057286113527
Merged-chr12-87275088-4	chr12	87274985	87275185	+	796.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8357.0	NM_146036	217737.0	Mm.22626	NM_146036	ENSMUSG00000021037	Ahsa1	BC023857|p38	AHA1, activator of heat shock protein ATPase 1	protein-coding	4.29107953168568	4.48171567415825	4.10507050147479	4.48242648351487	3.96322283973876	4.23004829445162	4.2725333331788	4.24493563268102	-0.457261743151246	0.261155327434737	0.573037857254451
Merged-chr14-74976509-3	chr14	74976412	74976612	+	899.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046078, intron 2 of 2)	intron (NR_046078, intron 2 of 2)	1426.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	3.36316342979588	3.63193483598721	3.52519831403677	3.66018902184325	3.46660828022641	3.14855779502926	3.16916240797428	3.3032473492063	-0.944774028715278	0.0846108980621579	0.316549077161418
Merged-chr7-142462746-4	chr7	142462670	142462870	+	917.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136071, intron 1 of 10)	intron (NM_001136071, intron 1 of 10)	1958.0	NM_001136071	16985.0	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	4.33523004740848	4.41047995995959	4.28215652993493	3.34034347675848	5.3894768846573	5.66511237036285	4.99859100744284	5.02116857719121	2.41949449722728	1.10108624587837e-07	4.68185292087077e-06
Merged-chr4-63765243-4	chr4	63765124	63765324	+	965.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20111.0	NM_177371	326623.0	Mm.208152	NM_177371	ENSMUSG00000050395	Tnfsf15	Tl1|Tl1a|Tnlg1b|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding	4.73634640285004	5.02656422285657	5.09672684752491	5.34078991441426	4.82572627494414	4.83072731544765	4.58589345688318	5.26807677071071	-0.356777148572703	0.323204959222763	0.634693600413583
Merged-chr19-5723043-4	chr19	5722946	5723146	+	988.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114595, intron 1 of 17)	intron (NM_001114595, intron 1 of 17)	3271.0	NM_001114595	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	5.58796852315356	5.64567473126354	5.12409066585883	5.07189439785308	5.93675083618586	5.50788882752544	5.72930536108635	5.53197737850694	0.558824842795678	0.0698181442823725	0.282826368414601
Merged-chr8-79501425-4	chr8	79501314	79501514	+	924.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101946.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	4.45738073566704	4.70943624385594	4.80515371877151	4.68877747635625	4.53791133689397	4.54227641748739	4.43850849313854	4.69693775822221	-0.257418721385531	0.467326898461672	0.746968519290045
Merged-chr9-44286608-4	chr9	44286510	44286710	+	930.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138955, intron 2 of 14)	MIRc|SINE|MIR	1634.0	NM_138955	192663.0	Mm.101876	NM_138955	ENSMUSG00000032131	Abcg4	6430517O04Rik	ATP binding cassette subfamily G member 4	protein-coding	4.59165817214559	5.27944227656573	4.15840592997384	4.27221344030352	4.71874838579574	4.88347627198931	4.72413681847867	4.3660949057731	0.0623286613304928	0.89020990663501	0.958902102669088
Merged-chr2-11598457-4	chr2	11598344	11598544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 2 of 11)	ID_B1|SINE|B4	4755.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	5.63000811457412	5.78933646926086	6.19705314830274	6.23742120659229	6.17095397326813	6.07506414283638	6.40538920326592	6.21147458837767	0.333727028776141	0.209058111186241	0.513442418925301
Merged-chr1-165134015-4	chr1	165133920	165134120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	26753.0	NM_032005	83993.0	Mm.190649	NM_032005	ENSMUSG00000026572	Tbx19	AU019250|D1Ertd754e|Tpit	T-box 19	protein-coding	5.90701271028567	6.03251749489038	5.61132849160088	6.29307601504666	6.337049682074	6.01192939247575	6.52013877663898	6.22161235285643	0.433627554483071	0.110105100334234	0.366485761293531
Merged-chr7-127208236-3	chr7	127208104	127208304	+	975.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347655)	promoter-TSS (NM_001347655)	264.0	NM_144522	68449.0	Mm.41420	NM_144522	ENSMUSG00000042492	Tbc1d10b	1110003P22Rik|C87963	TBC1 domain family, member 10b	protein-coding	4.19015370777257	4.309770346652	4.19077289818387	4.06290345246826	4.40995793207641	4.99111766313143	4.360408746902	4.72316661490234	1.04776862728142	0.00798961464842205	0.0671480939849962
Merged-chr13-93007293-4	chr13	93007188	93007388	+	988.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-66016.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	5.04163586116252	5.49373413151525	5.36859652989001	5.2731743554538	6.94052607903505	6.94565430432618	6.78270763073905	6.53626128885414	2.31841719168722	5.33727842675202e-20	1.80048408122171e-17
Merged-chr9-32541417-4	chr9	32541344	32541544	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008026)	promoter-TSS (NM_008026)	8.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	5.30530632333695	5.30480799383729	5.24678421876856	5.09463681228315	4.85181599910621	5.35833668770421	5.30821977702385	5.14851712805136	-0.117520991585542	0.706185836968127	0.8819145499606
Merged-chr3-113630903-4	chr3	113630819	113631019	+	757.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026043)	promoter-TSS (NM_026043)	-770.0	NM_001038696	67225.0	Mm.316928	NM_026043	ENSMUSG00000027981	Rnpc3	2810441O16Rik|AI447568|C030014B17Rik	RNA-binding region (RNP1, RRM) containing 3	protein-coding	3.2423475383982	3.36070908027817	3.36905084609724	3.82550798202928	3.52660991903035	3.65408512037192	3.35718448974302	3.63779188538482	0.192166253010512	0.727714888679702	0.891608883059343
Merged-chr10-14047102-2	chr10	14047008	14047208	+	732.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	B3A|SINE|B2	80729.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	2.34080372495842	2.41546307067451	2.48777192172159	2.32500365393761	2.58280343111789	2.84980914562267	2.6102708256371	2.68010557318133	1.57464189954924	0.0204161719441462	0.129773415146667
Merged-chr7-16880874-3	chr7	16880766	16880966	+	815.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081655, intron 1 of 3)	intron (NM_001081655, intron 1 of 3)	5549.0	NM_001081655	629378.0	Mm.491123	NM_001081655	ENSMUSG00000078794	Dact3	EG666671|naa-3	dishevelled-binding antagonist of beta-catenin 3	protein-coding	3.78976100444654	3.89038840009434	3.79030724547117	3.52757309500331	3.79025038012591	3.62284210596448	4.19939262173684	3.62490623214076	0.248226501990827	0.610348420025624	0.831595076242652
Merged-chr4-3679021-4	chr4	3678919	3679119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	898.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	8.1438592298534	8.06501458778878	7.91637101156047	8.21385823391621	8.06446258247323	7.97808264660383	8.45721544554341	8.14592906000112	0.102148398517974	0.5684160870321	0.808665348796528
Merged-chr2-91498430-4	chr2	91498351	91498551	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 31 of 37)	intron (NM_172668, intron 31 of 37)	-28311.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	4.17556796596197	4.54493800703783	4.45137656916116	3.72560612259075	5.42468941034947	5.62613283659467	5.08394330797771	5.3035409369745	2.34528135820191	1.63529832729411e-09	1.01040711491725e-07
Merged-chr11-60726869-3	chr11	60726766	60726966	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022009, intron 1 of 29)	CpG	397.0	NM_022009	14248.0	Mm.339755	NM_022009	ENSMUSG00000002812	Flii	3632430F08Rik|Fliih	flightless I actin binding protein	protein-coding	4.85283552409548	4.75940157878129	4.85364198388024	4.8892535289142	4.58946072750445	4.53063772819688	4.8303149523167	4.74176185146697	-0.350561554400325	0.297456402739616	0.609583084979792
Merged-chr16-57530727-4	chr16	57530628	57530828	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-18514.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	5.05349029274433	4.94560435371371	5.18263878613381	5.53469394440732	4.94740609598159	4.88823631144317	4.72955487172715	5.29533145094807	-0.448492858853934	0.197078068695183	0.498379618699314
Merged-chr5-34187921-4	chr5	34187826	34188026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010753)	promoter-TSS (NM_010753)	-216.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	9.44951014405368	9.56110172877242	9.76933804665089	9.48526397846267	9.42581577796137	9.54099153282683	9.65464293882451	9.49458385852513	-0.049307857430821	0.736844688254491	0.896086114515881
Merged-chr19-21778334-4	chr19	21778249	21778449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031997)	promoter-TSS (NM_031997)	9.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	8.32769268925252	8.4656075054044	8.539489893767	8.49949699953819	8.13500188466684	8.11951334086383	8.21138048257833	8.09684717548627	-0.408006721096383	0.00696081271896013	0.0606433765671008
Merged-chr4-9643720-4	chr4	9643616	9643816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177852)	promoter-TSS (NM_001177852)	1.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	6.52246099579527	6.10301260517891	6.26036192642618	6.62211981917848	6.52983222507265	5.73415722054956	6.66621465991547	6.5501922745535	0.033681340042261	0.904862271533843	0.964691960037782
Merged-chr5-138257192-4	chr5	138257100	138257300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081108, intron 2 of 3)	intron (NM_001081108, intron 2 of 3)	1718.0	NM_001081108	66096.0	Mm.206901	NM_001081108	ENSMUSG00000050552	Lamtor4	0910001L09Rik|AV006840	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein-coding	5.66577421472079	6.01738378573389	6.11999235891772	6.20019116720317	5.21180137511621	5.34908510094315	5.21388603807597	5.80959677848948	-1.01867572016063	0.000612540658446301	0.00908533070465332
Merged-chr5-76705627-4	chr5	76705523	76705723	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	113909.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	5.25093926822286	4.98259227889927	5.11744065748569	5.43760380828329	5.69235214816982	5.70830596631714	5.34659689874545	5.21594615575728	0.512381795147998	0.101624173071325	0.349867328418083
Merged-chr16-17209192-4	chr16	17209077	17209277	+	987.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033338, exon 1 of 1)	exon (NM_001033338, exon 1 of 1)	1042.0	NM_001033338	239731.0	Mm.86671	NM_001033338	ENSMUSG00000071636	Rimbp3	Gm1759|Gm603|RIM-BP3|mKIAA1666	RIMS binding protein 3	protein-coding	5.21888462446918	5.37239462789976	5.30981302868357	5.06855305209558	5.14126925741323	5.26398791984604	5.02961364919214	5.27684414388822	-0.105895574587488	0.723735473803412	0.88974079900073
Merged-chr5-124059835-4	chr5	124059728	124059928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27568.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	5.99629581682846	6.26264055835032	5.84092820608733	5.59089156380163	5.70563382128238	6.08522803995851	5.8575886166621	5.71198294730103	-0.14771603825712	0.600634705987211	0.826881168058353
Merged-chr9-106474559-5	chr9	106474388	106474588	+	792.313354	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001311150, exon 5 of 11)	exon (NM_001311150, exon 5 of 11)	2461.0	NM_001311150	235587.0	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	2.78485895607793	2.51811837429107	2.60861829912853	2.33209401398917	2.42209870353179	2.35244885207627	2.3231927186417	2.83724063259699	-0.353326566745089	0.641307558420861	0.848674042070361
Merged-chr11-100397895-4	chr11	100397807	100398007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132425)	promoter-TSS (NR_132425)	-117.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	8.26754776318731	8.47957857747467	8.00719154081154	8.06374635649801	8.40776881528382	8.61863633179379	8.54777792142849	8.26346204871524	0.315548234592187	0.080026118618267	0.306427408528142
Merged-chr14-118663149-4	chr14	118663043	118663243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033336, intron 3 of 30)	intron (NM_001033336, intron 3 of 30)	13788.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	5.99758137173283	6.23404848308851	6.51546279983042	6.76725207932185	6.06690020004885	5.95487374549146	6.21439846111623	5.62772356697629	-0.669915357508537	0.0175616982703739	0.117164131707465
Merged-chr2-132595922-4	chr2	132595822	132596022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2274.0	NR_033468	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	6.87908914228904	6.93793526707806	6.29840391116699	6.67149897371179	6.39736288152267	6.6608207861873	6.36186564988824	6.61027779540941	-0.305998635187576	0.19400108790195	0.49433215631272
Merged-chr4-41503166-4	chr4	41503033	41503233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085515)	promoter-TSS (NM_001085515)	-58.0	NM_001085515	329828.0	Mm.27054	NM_001085515	ENSMUSG00000046312	AI464131	AA408153|AI604836|Gm762|Kiaa1161|Myorg|NET37	expressed sequence AI464131	protein-coding	5.41980968007927	5.08175874877065	5.79345679173655	5.55709975527239	5.73955559851904	5.84729860601539	5.93483217525931	5.83456571799743	0.581935125975886	0.0403269686204495	0.202840320941816
Merged-chr4-150138267-4	chr4	150138159	150138359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019741, intron 7 of 13)	intron (NM_019741, intron 7 of 13)	-10713.0	NM_001085529	435818.0	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	-	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	5.68993069836759	6.08046489377262	5.71741918620379	5.71680886757814	6.34170417995874	6.13265807145016	5.81365168468249	6.07953559868468	0.485733534134615	0.0646858433827738	0.270394270973834
Merged-chr17-34235139-4	chr17	34235029	34235229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3776.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	5.2225372537128	5.15934226931618	5.22342719641572	4.8879106717455	5.85675405416573	5.84635040870551	5.62078402851134	5.59652681195168	1.1080672189921	8.66627331600681e-05	0.00180051566946891
Merged-chr3-157634584-3	chr3	157634478	157634678	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011196, intron 2 of 2)	intron (NM_011196, intron 2 of 2)	67686.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	3.33099967218343	3.40517193817476	3.00270517175745	3.54482509800424	3.25848649048236	3.32164906918929	3.79250261317293	3.27019063755595	0.295315769582805	0.61459425158954	0.83400766846304
Merged-chr11-9531848-4	chr11	9531750	9531950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 45 of 61)	intron (NM_178259, intron 45 of 61)	339908.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	6.33469846571921	6.05232199165217	6.33581959469281	6.32063068596691	6.21785283644488	6.16165733663255	6.50270499953847	6.63494089645864	0.184777901610101	0.436741335859553	0.725278104435332
Merged-chr1-153553716-4	chr1	153553622	153553822	+	954.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4008.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	4.86836925463601	4.92905805578501	4.64315011476232	3.77789405907214	4.93266634432869	5.00769140617564	4.77480602286085	4.79491200694952	0.526132524572668	0.231853081198932	0.54142155659784
Merged-chr19-57361644-3	chr19	57361538	57361738	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040316)	promoter-TSS (NR_040316)	629.0	NM_145505	226252.0	Mm.358870	NM_145505	ENSMUSG00000033478	Fam160b1	AI450540|mKIAA1600	family with sequence similarity 160, member B1	protein-coding	4.96969933320673	4.68266460514681	5.33130367659485	4.77519630395857	5.00533547131822	5.03709324034091	4.83851577566598	5.16028344160983	0.127137651026876	0.710419578400305	0.88411496059018
Merged-chr10-94464977-4	chr10	94464906	94465106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	ID_B1|SINE|B4	-49851.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.30930783374249	5.20708401323607	5.54167819113118	5.87312751730894	5.27867599654573	5.42236423172646	5.53972551208419	5.58952327024278	-0.12671782667221	0.684307260670269	0.87068468799904
Merged-chr19-47580372-4	chr19	47580311	47580511	+	886.473206	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164639, intron 1 of 17)	CpG	392.0	NM_001164639	20874.0	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	4.18157685593655	4.37631758229189	4.13792620082139	4.1284198995038	4.1662029366477	3.95539930270186	4.02730181295793	3.71367349049953	-0.584249189938191	0.178602161562544	0.474403912720026
Merged-chr18-5401693-4	chr18	5401609	5401809	+	965.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66902.0	NM_001360447	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	5.2331260344584	5.35423879394405	4.79363628127618	5.62528014084342	5.06292418509119	4.55791048852899	4.77115438567116	4.57159834849661	-1.02617619410533	0.0065113727476798	0.0576817673686498
Merged-chr1-74435764-4	chr1	74435653	74435853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009509)	TTS (NM_009509)	26369.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	6.70697924441875	6.58918812327385	6.46134241768501	6.47832167602085	6.49673222009231	6.47469587604613	6.4944028748356	6.14958226060923	-0.208110385507134	0.344312039439554	0.652844609889931
Merged-chr11-88161816-3	chr11	88161697	88161897	+	858.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198013, intron 1 of 10)	intron (NM_198013, intron 1 of 10)	-7768.0	NM_001172099	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	4.18401400498341	4.38095941751891	3.85947569908172	3.97339500140595	3.92579687486456	3.54389083876549	3.84387867706304	3.95877555624808	-0.770391033984555	0.102080059229512	0.350783967080574
Merged-chr8-104570638-4	chr8	104570532	104570732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20836.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	5.10962502921322	5.5966374431501	5.11047243974351	5.5455709247185	5.57363535938207	5.25263570407019	5.56012339437265	5.48092006958193	0.17408321758468	0.567552514221954	0.808307057069209
Merged-chr4-120027461-3	chr4	120027349	120027549	+	917.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-133757.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	3.664558584842	4.05091740177315	3.90605317688076	3.67804946679403	3.77357070688456	3.34259870283756	3.48282828110918	3.49356419247716	-0.893972791897727	0.084297107665652	0.315882275679571
Merged-chr18-20745711-5	chr18	20745592	20745792	+	897.1333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019737, exon 1 of 9)	5' UTR (NM_019737, exon 1 of 9)	712.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	4.03377489433403	4.18634951344943	4.53016369787497	4.15276172412866	4.51949171429819	4.10369242902276	4.21864700329431	4.79466484652061	0.49053782027225	0.246490971616767	0.557727155849382
Merged-chr2-58189118-3	chr2	58189012	58189212	+	778.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	25138.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	3.60973058922726	3.42339082152149	3.5077188595995	3.21548656663179	3.44147637358394	3.38763414177033	3.59474557496132	3.45130540816791	0.126030132575424	0.806359424594138	0.925408958667777
Merged-chr2-165878248-4	chr2	165878115	165878315	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291158, exon 1 of 24)	5' UTR (NM_001291158, exon 1 of 24)	222.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	5.34350260477632	5.31542857392995	5.7487191909491	5.7353411233982	5.89305274533101	5.08074517595909	5.82891003264437	5.43243137321673	0.0870637458530233	0.788847329703732	0.918193420999835
Merged-chr10-20003252-4	chr10	20003131	20003331	+	843.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 2 of 29)	intron (NM_008580, intron 2 of 29)	68705.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	3.58965848619014	3.59969214820311	3.47497049601594	3.64523403271583	3.93341169799059	3.59015584346136	3.9090331791349	3.41179471727738	0.471358823204366	0.341784993543138	0.650755862859763
Merged-chr7-73541196-2	chr7	73541096	73541296	+	996.3333130000001	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037569, exon 5 of 5)	non-coding (NR_037569, exon 5 of 5)	550.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	3.5975199798096	3.7191059716896	3.75052013338751	3.20636330702867	3.93828756363768	3.47847253940841	3.14574578503562	3.79515116609363	0.141637117548401	0.807197832954691	0.925701815004462
Merged-chr10-36892493-3	chr10	36892384	36892584	+	731.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-82060.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	3.71800680452073	3.89540971494571	4.11676823497699	3.41223297882832	3.35063505174406	3.33687610310227	3.75317239256809	3.8161696408569	-0.686900743937733	0.209099563145295	0.51350737666019
Merged-chr6-120471314-2	chr6	120471214	120471414	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 1 of 12)	B2_Mm2|SINE|B2	8117.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	3.06988893329672	3.15307380833098	3.00962386991353	2.78973936902018	2.79843910346059	3.12065028039283	2.9987647847045	3.23492020077558	0.157498305492304	0.7956536276106	0.920897975671128
Merged-chr15-73620388-4	chr15	73620288	73620488	+	872.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	-3064.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	4.79784867827917	4.16955936672845	4.20511846165427	4.29422502418732	4.61288414921557	4.22722290317658	4.49561475853726	4.59035851414922	0.253588636281726	0.530990413672859	0.786946322008893
Merged-chr18-69300701-4	chr18	69300616	69300816	+	745.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43776.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	3.81004435531003	3.47712846605494	3.65593913648599	3.94079797740538	3.90696776990482	3.71641269759023	3.7945288695328	3.59810935129923	0.0592477787030031	0.902642549561631	0.963848753135321
Merged-chr13-100408465-4	chr13	100408366	100408566	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008670, exon 16 of 16)	3' UTR (NM_008670, exon 16 of 16)	44398.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	6.4144694705337	6.81319877863392	6.64332652356403	6.85092315035349	5.57134196847038	5.44094528683262	6.04209597164215	5.80375410759772	-1.48612542810427	1.00921733781287e-08	5.34487208989453e-07
Merged-chr12-117378628-1	chr12	117378528	117378728	+	861.6666869999999	f0_balb.idr	Intergenic	Intergenic	-41616.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	3.60168843575451	3.57538666589363	3.90423555418974	3.72349665088523	2.79960816031195	3.02795020448589	3.31914270357357	2.99222848607119	-2.75088217420624	3.74999347886139e-05	0.00087947540636532
Merged-chr4-135433869-4	chr4	135433787	135433987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022980)	promoter-TSS (NM_022980)	-82.0	NM_022980	53902.0	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	7.10044523465206	7.26733494599979	6.95228170592508	6.96693446290797	7.2010467988003	6.8987854610896	7.05421941361477	7.34058869368014	0.0870767848749923	0.666490757582532	0.862000851460164
Merged-chr15-76303879-4	chr15	76303780	76303980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153122, intron 10 of 26)	RLTR20C2_MM|LTR|ERVK	3365.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	7.36573212215518	7.37182492283976	7.17247883472594	7.27229878691407	7.46765956283569	7.52373422505144	7.38885073299243	7.26843536004675	0.159984160361688	0.36946206874743	0.673692529630015
Merged-chr12-117534511-2	chr12	117534411	117534611	+	940.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 3 of 27)	intron (NM_175930, intron 3 of 27)	18032.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	3.49002499350059	3.37928076826181	4.13111659505842	3.8052473253837	3.69561552910872	3.78815123277992	3.90348017994743	3.87201273115341	0.23170280734213	0.648325084668066	0.852130573383589
Merged-chr14-8215371-4	chr14	8215284	8215484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305937)	promoter-TSS (NM_001305937)	-864.0	NM_001305937	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	6.23866479796532	6.19919146184027	5.84828370550612	6.31910022479381	6.23556652374689	6.33794208901193	5.76704976200063	6.29013728908064	0.00512510359124718	0.984156262464346	0.994237242628259
Merged-chr14-48138053-1	chr14	48137953	48138153	+	931.6666869999999	f0_balb.idr	intron (NM_033602, intron 1 of 5)	intron (NM_033602, intron 1 of 5)	17184.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	3.7727451224356	3.30537950212556	3.64259085181232	4.01381882969338	2.68107648696968	3.04274201842822	2.84092420129948	3.00257673620943	-4.06096366251756	1.95597083241181e-06	6.42473686572404e-05
Merged-chr1-182341628-4	chr1	182341514	182341714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175127)	promoter-TSS (NM_175127)	-8.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	6.22541664559885	6.04961364948233	5.97941938770926	6.07333844392003	6.21520483506796	6.10988415199208	6.36796403503993	5.92889363210383	0.131597011564031	0.580128898706956	0.815645397153596
Merged-chr1-138619296-4	chr1	138619205	138619405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 1 of 9)	CpG	452.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	7.05328431975915	7.20517659444107	7.18410467556227	7.3379818265825	7.29808851179444	7.2063707661978	7.04356453133792	7.167826545029	-0.0306352531412941	0.870432057955909	0.951361762994343
Merged-chr6-117879496-5	chr6	117879334	117879534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	16553.0	NM_001001792	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	6.97158167027064	7.12673603904833	6.97280068218733	6.68849757362829	6.98712788291773	7.48869372479872	6.98827949414049	7.41175514225192	0.402357861207515	0.0703927365168032	0.284234433431446
Merged-chr16-21640994-7	chr16	21640860	21641060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 46 of 46)	intron (NM_001081366, intron 46 of 46)	53705.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	5.87231033546792	5.9152510272611	6.13398296932336	6.44192811760534	5.75480657524698	6.09675516643053	6.0219972036882	5.96207838703385	-0.272512552660357	0.308760082157357	0.621106542162516
Merged-chr13-100786625-4	chr13	100786534	100786734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172301)	promoter-TSS (NM_172301)	-148.0	NM_172301	268697.0	Mm.260114	NM_172301	ENSMUSG00000041431	Ccnb1	Ccnb1-rs1|Ccnb1-rs13|CycB1|Cycb-4|Cycb-5|Cycb1-rs1	cyclin B1	protein-coding	8.46895034485362	8.36451898901212	8.27182189990186	8.22133450921017	8.16667678883689	8.32454358272623	8.1451975093364	7.96724773350958	-0.222936511917579	0.173750308278144	0.46792963502147
Merged-chr10-81303515-4	chr10	81303411	81303611	+	997.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	10548.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	4.78418467546024	5.13805847663048	4.70448319737551	4.77074627276941	4.97117755324072	5.07000457846888	4.6828623735935	5.09156003612711	0.206407902349811	0.541136253580786	0.793064103805526
Merged-chr16-76283507-4	chr16	76283407	76283607	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89542.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	3.9522782741843	4.09419653131451	4.23379991633831	4.18415546461542	4.25832910815418	3.8448175536716	4.33334836761023	3.89730594477255	-0.0368040569617501	0.93237100994565	0.97563407274323
Merged-chr4-135307688-3	chr4	135307589	135307789	+	974.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34929.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	3.89315060969509	5.13312554916124	3.71133481318442	3.79299931184349	4.37090705691283	4.2339705628904	3.93280272814033	3.77274194065359	-0.470514468026981	0.577924504481752	0.814391164493464
Merged-chr5-66299109-4	chr5	66299006	66299206	+	920.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001201413, exon 17 of 17)	3' UTR (NM_001201413, exon 17 of 17)	38265.0	NM_027602	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	4.26471337517732	3.9598473282735	3.90024455510648	4.24085502994558	4.32557222459428	4.24808486064375	4.52815989328204	4.83772477460344	0.932080897891242	0.0269828778890443	0.156223707927793
Merged-chr4-128729917-4	chr4	128729821	128730021	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	2350.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	4.88660858671686	5.05536686224743	4.88740455464389	5.02728333656961	5.24622189685576	4.98620962126328	5.03814716050514	5.05933126788866	0.234027851699027	0.44956383629667	0.734725605670348
Merged-chr1-106351173-3	chr1	106351064	106351264	+	776.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 10 of 16)	MTE2a|LTR|ERVL-MaLR	179295.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	3.4132406799424	3.84180790418233	3.70113569426569	3.2783569388285	3.68235390120961	3.92193228810173	3.83006159640323	3.53432811371717	0.548051656050255	0.28337975720495	0.595462234695965
Merged-chr6-142346343-3	chr6	142346223	142346423	+	839.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183165, intron 1 of 11)	intron (NM_183165, intron 1 of 11)	626.0	NM_183165	232491.0	Mm.490474	NM_183165	ENSMUSG00000041671	Pyroxd1	-	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding	3.31320009245137	3.04122434012293	3.36579901132653	3.17037573676569	3.29006756045376	3.05500659010017	3.00631088353958	3.31178138470334	-0.175918478475629	0.756997693962798	0.904554066545557
Merged-chr11-62756965-4	chr11	62756859	62757059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-27866.0	NM_133208	170740.0	Mm.339982	NM_133208	ENSMUSG00000005267	Zfp287	B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74	zinc finger protein 287	protein-coding	6.34954755134596	6.46340007389647	6.42003479315325	6.46087531315062	6.13091871047046	6.11047573042488	6.28219560089992	6.27275949869614	-0.344752263039693	0.113649920818275	0.372821813712048
Merged-chr6-54948356-1	chr6	54948256	54948456	+	570.0	f0_c57.idr	intron (NM_001171007, intron 2 of 11)	intron (NM_001171007, intron 2 of 11)	23305.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	3.48162205884178	3.84803079318985	3.5420510743462	3.5837979479667	3.34264220892027	3.66041798939338	3.63955969708946	4.17427762583192	0.348091119173065	0.510887080479013	0.775063547069689
Merged-chr4-132078550-4	chr4	132078461	132078661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3248.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	7.37622325469682	7.33511616876728	7.39718808341861	7.21647209858706	7.37533352510385	7.32684120240426	7.40825915770381	7.4114435630039	0.0756017491587438	0.663982891359824	0.860805009181497
Merged-chr14-67072079-4	chr14	67071968	67072168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360034, intron 1 of 8)	CpG	403.0	NM_001360034	71978.0	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	6.13767817961181	6.5786510224465	6.70144149671612	6.07153267522337	6.10063813533258	6.49513082406628	6.40992814121506	6.52001772159037	-0.00895367124953197	0.97265112679051	0.990158712105621
Merged-chr2-30545258-4	chr2	30545157	30545357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-49787.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	5.49659394640566	5.53478943566146	5.58293432526447	5.42473858037876	6.10591133018422	5.86346721776876	5.52717965963423	5.97680057464739	0.647753460436132	0.0164186097714781	0.111927475746378
Merged-chr13-49292120-4	chr13	49292020	49292220	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 3 of 17)	L1M4c|LINE|L1	17088.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	5.2381940387338	5.39548624479091	5.48193004126478	5.84964979049593	5.79918969605561	5.0812979750612	5.17988708562644	5.63369215290272	-0.0973226088130341	0.772099114917543	0.910726384110984
Merged-chr10-75935816-4	chr10	75935732	75935932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175329, exon 2 of 5)	5' UTR (NM_175329, exon 2 of 5)	2702.0	NM_175329	103172.0	Mm.333849	NM_175329	ENSMUSG00000049422	Chchd10	1620401E04Rik|AI267078|Ndg2	coiled-coil-helix-coiled-coil-helix domain containing 10	protein-coding	6.78064702364002	6.79236961325135	6.67914889881194	6.95040208097242	6.67578082673969	6.72765486332857	6.7045844859445	6.73406424029999	-0.152463573154518	0.44487954574278	0.73115209509395
Merged-chr4-126305619-4	chr4	126305518	126305718	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199473, intron 2 of 3)	L1MB8|LINE|L1	16085.0	NM_133883	100206.0	Mm.11285	NM_133883	ENSMUSG00000042558	Adprhl2	AI836109|Arh3	ADP-ribosylhydrolase like 2	protein-coding	4.83333734637664	4.68731989210856	5.00607086864041	4.61420296212184	4.84659214173758	5.00733725850317	4.91609753563896	4.90242783466302	0.282021638786485	0.393661167544918	0.692785646162283
Merged-chr14-26612691-4	chr14	26612577	26612777	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285467, intron 12 of 19)	intron (NM_001285467, intron 12 of 19)	-25457.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	5.44288605613257	5.62888938519214	5.35611377325398	5.18153879130332	5.52654067441522	5.67240433811685	5.20337669339852	5.46792779746677	0.135772167609216	0.645333416972568	0.850869450526821
Merged-chr9-13555834-4	chr9	13555710	13555910	+	964.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64179.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	4.93774328454219	4.97907987024259	4.43190912434349	4.7267671020274	4.76887404063816	4.7004090711205	4.58903794397864	4.68772182164317	-0.197374414919114	0.577422610854337	0.814142662242752
Merged-chr13-60608675-3	chr13	60608597	60608797	+	753.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	ORR1E|LTR|ERVL-MaLR	6486.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	2.65286173426312	2.66561672236649	2.82597048267096	2.67672066549078	2.29950418528866	2.40331638354921	2.58118512674556	2.52245840926298	-1.43958191006862	0.0489887292030268	0.228867081212017
Merged-chr19-32884664-3	chr19	32884559	32884759	+	987.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	127082.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	3.92781874425755	4.39668469314976	4.51578156950089	4.5259004506796	3.85033457667934	3.81812489231156	3.85865801215905	3.63038099539949	-1.55810430853468	0.000777609042029677	0.010983335784188
Merged-chr1-180812626-4	chr1	180812523	180812723	+	919.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008210, intron 1 of 3)	CpG	982.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	3.99423715071884	4.07053572798851	4.4963458909542	3.64766689026652	4.56040491993075	4.32881978984588	4.43666788644691	4.53045449444748	0.970101317377624	0.0272188771177518	0.157142708602844
Merged-chr4-35096260-4	chr4	35096182	35096382	+	913.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-55773.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	4.81323043715284	4.85796608698115	4.94744279796155	5.27189892033402	4.20400294976738	4.48533581301666	4.33500623816542	4.53754887769373	-1.34278681171098	0.000308684414700834	0.00518938307841064
Merged-chr19-23015675-1	chr19	23015575	23015775	+	790.333313	f0_c57.idr	Intergenic	Intergenic	-125551.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	3.58270813569149	3.56512308631545	3.64270720499003	3.58933872370435	4.17930486009993	4.02864969334098	4.14332313236065	3.69767996147527	1.252464144983	0.0059254595739851	0.0537832551666266
Merged-chr7-28716783-4	chr7	28716655	28716855	+	890.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015796)	promoter-TSS (NM_015796)	-27.0	NM_001310687	50760.0	Mm.358659	NM_015796	ENSMUSG00000030598	Fbxo17	Fbg4|Fbx17|Fbxo26	F-box protein 17	protein-coding	5.95313612233887	5.76666996908813	5.83708118985646	5.90345813501581	4.63995622345754	5.25535147565071	4.71501604168055	4.63535015220019	-1.9234868090182	1.77305920669382e-09	1.0870334304329e-07
Merged-chr5-115300339-4	chr5	115300302	115300502	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131932)	promoter-TSS (NR_131932)	588.0	NM_019682	56455.0	Mm.256858	NM_019682	ENSMUSG00000009013	Dynll1	Dlc8|Dnclc1|Pin	dynein light chain LC8-type 1	protein-coding	4.34668057752014	4.69524812745745	4.52716416337069	4.32589744507302	4.62224001032589	4.57146186696932	4.5869527762012	4.97737934609689	0.49205781683207	0.180915914772392	0.477330191177408
Merged-chr6-40325487-4	chr6	40325256	40325456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023538)	promoter-TSS (NM_023538)	-122.0	NM_023538	69923.0	Mm.32840	NM_023538	ENSMUSG00000029916	Agk	2610037M15Rik|6720408I04Rik|AI465370|Mulk	acylglycerol kinase	protein-coding	4.98522028511975	4.40057111441493	4.5909819939947	4.84874106967989	5.29938900832392	5.12544798695225	5.0274326531397	5.22890537418537	0.871178507255019	0.0103436788800583	0.0809029910082074
Merged-chr6-137697028-4	chr6	137696936	137697136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38046.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	6.49467780800764	6.11000839190792	6.4309077636943	6.41040207607903	6.26300397784694	6.10413618246075	6.41445415668817	6.1269863188407	-0.199921873416915	0.389039096741253	0.689372746818333
Merged-chr17-35059046-4	chr17	35058956	35059156	+	850.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190449)	promoter-TSS (NM_001190449)	21.0	NM_016765	51793.0	Mm.1457	NM_016765	ENSMUSG00000007039	Ddah2	1110003M04Rik|AU019324|AW413173|DDAH-2|DDAHII|Ddah|G6a|NG30	dimethylarginine dimethylaminohydrolase 2	protein-coding	4.18158066981537	4.37770175118522	3.77351005310302	3.83358679981642	4.18806995932753	4.16786641585646	3.97711384758876	4.17959769401735	0.189679956752721	0.669059161514842	0.863360443391315
Merged-chr17-6986277-3	chr17	6986178	6986378	+	901.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026611, intron 4 of 8).2	intron (NM_026611, intron 4 of 8).2	7418.0	NM_026611	68195.0	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	4.03543183092781	4.40161574811696	4.03607043261698	3.82339328173797	3.72763150671076	4.01843908634736	3.47987170660556	3.34953089450679	-1.21321913398605	0.0216397393263087	0.134900596033222
Merged-chr5-107869160-4	chr5	107869061	107869261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 1 of 17)	CpG	5946.0	NM_007964	14020.0	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	6.80566655795029	6.58994219655433	6.80686084883481	6.89457373365297	6.82219073164514	6.94050113532504	6.96649981660573	6.8704230773464	0.157563557928814	0.42743130183579	0.718573105661953
Merged-chr3-36551924-4	chr3	36551818	36552018	+	862.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019393)	promoter-TSS (NM_019393)	-688.0	NM_019393	50911.0	Mm.116711	NM_019393	ENSMUSG00000027714	Exosc9	PM/Scl-75|Pmscl1|RRP45|p5|p6	exosome component 9	protein-coding	4.08615514775275	4.41854337501489	4.26801490554476	4.00023799127551	4.08893039387871	4.35167870133361	3.969413239363	4.03480636516899	-0.202437454544053	0.632447083455995	0.843914870804309
Merged-chr7-101608061-4	chr7	101607990	101608190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26929.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	8.001387295208	8.21348080940683	7.94794410435777	8.00487502116698	8.02165336112186	7.90409299564662	7.69722733979112	7.80206967311354	-0.232279433348311	0.173832110089501	0.467990308410324
Merged-chr5-124497017-4	chr5	124496919	124497119	+	909.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021430, intron 6 of 6)	intron (NM_021430, intron 6 of 6)	13864.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	4.87159482998128	5.3617704439674	4.68383672196467	4.78292675731609	4.44262360438046	4.49573516835948	4.70159505351283	4.97002147290391	-0.592578121432118	0.120956351336123	0.385159463368462
Merged-chr13-113613398-5	chr13	113613239	113613439	+	932.580017	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	5225.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	3.75892811468785	3.23023438897143	3.45929876436335	3.10874844343815	3.61142892779924	3.57621402934747	3.38881402780909	3.56529821797797	0.460628171589236	0.396434371666246	0.69519327480908
Merged-chr10-44069301-4	chr10	44069200	44069400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64454.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	5.71047771173625	5.89203492016237	5.88252439911643	5.93172471629124	5.89389148338345	5.69259271056758	5.89722102882151	6.04889402842057	0.0434311562401969	0.861173928914664	0.947574515069552
Merged-chr2-91965634-4	chr2	91965544	91965744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2081.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	6.68866938002599	6.74606217729079	7.00589653035893	7.15342808776609	7.08285084814311	6.80337895590445	6.8432644518093	6.80417184590763	-0.040779885960683	0.851022208473155	0.943813742025066
Merged-chr5-129941807-4	chr5	129941645	129941845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001327)	promoter-TSS (NM_001001327)	-364.0	NM_001001327	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	8.70681139190037	8.97382727108139	8.66351372349146	8.32476224790184	9.03298897256199	9.37738805677413	8.95662925041002	8.93413959318122	0.501790517241329	0.00895307488887677	0.0729142926218947
Merged-chr8-120109937-2	chr8	120109837	120110037	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4215.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	2.99938301441901	3.11326743965877	3.18120736967418	2.81070475160787	3.09797899316828	3.35023536211244	3.11161573887642	3.06151476420444	0.540583568270553	0.35112615629541	0.658624098847102
Merged-chr14-84443474-4	chr14	84443392	84443592	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013753)	promoter-TSS (NM_001013753)	-71.0	NM_001013753	219228.0	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding	5.9874656076279	6.17684418075871	6.36782864850174	6.19006120138729	5.5658239209794	5.26200431731311	5.50923612258912	5.8031120684755	-1.02819548828382	0.000114990908560195	0.00228056224029148
Merged-chr4-139614683-4	chr4	139614566	139614766	+	991.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 7 of 8)	intron (NM_001205173, intron 7 of 8)	-8228.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	4.91700464785736	4.80096515884494	4.87936787872767	4.78405522726596	5.47320269651193	5.42169712318179	5.16414642168521	5.24610504307115	0.945657313801282	0.00167560866234636	0.0203529264466129
Merged-chr2-127079655-4	chr2	127079569	127079769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 1 of 7)	MTA_Mm|LTR|ERVL-MaLR	9012.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	6.55678811794949	6.13618940511997	6.15851740669892	5.93759756471596	5.67314369501036	5.77826583640796	5.65479569934107	5.59465686524344	-0.844801718196188	0.00168541784962323	0.0204476490742
Merged-chr1-140183316-4	chr1	140183166	140183366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009888, exon 1 of 22)	exon (NM_009888, exon 1 of 22)	145.0	NM_009888	12628.0	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	7.15728024516436	6.7165063324151	7.21061334381235	7.38590606334805	6.39887208432217	6.44757661718287	6.72653452940357	6.58434778376299	-0.854366960803272	0.00021115120325761	0.00380783671058358
Merged-chr9-96725928-3	chr9	96725819	96726019	+	896.81665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175537, intron 1 of 2)	intron (NM_175537, intron 1 of 2)	5756.0	NM_175537	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	4.46445058227838	4.05568845852249	4.49922370216399	4.24825894708287	3.67530099023399	3.6643056506925	3.78345110642242	3.90730433624156	-1.56898953034133	0.000624363940020504	0.00921642490392357
Merged-chr6-136742984-3	chr6	136742894	136743094	+	828.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145067, intron 10 of 25)	intron (NM_145067, intron 10 of 25)	38748.0	NM_145067	14917.0	Mm.222729	NM_145067	ENSMUSG00000042638	Gucy2c	AI893437|GC-C|Gcc	guanylate cyclase 2c	protein-coding	3.69090062284266	3.78078693746963	4.18772125961401	3.82311905253292	3.77043265199744	3.49762297982509	3.87829652591673	3.68938854794472	-0.472147145903205	0.326421846578572	0.637923349237677
Merged-chr10-50609687-3	chr10	50609590	50609790	+	728.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 3 of 41)	intron (NM_198007, intron 3 of 41)	17021.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	3.47340858904985	2.98896070728187	3.26149341706734	3.43412909352248	3.31641929558386	3.25062741579869	3.19112907190335	3.25980417233037	-0.186010749895585	0.739569940630229	0.897360325999677
Merged-chr3-95217956-4	chr3	95217866	95218066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172512)	promoter-TSS (NM_172512)	-24.0	NM_029885	213054.0	Mm.224820	NM_029885	ENSMUSG00000038766	Gabpb2	1810015F01Rik|5830427M07|9430006E19Rik|A430024B14Rik|AV050852|Gabpb2-1	GA repeat binding protein, beta 2	protein-coding	5.7375637552989	5.67427012813015	5.21387761045541	5.52399978283599	5.86838720110631	5.81368335387249	5.82270151302697	5.40978802467968	0.323819752183853	0.253771034056896	0.565032649092237
Merged-chr13-56134326-2	chr13	56134226	56134426	+	950.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159513, intron 1 of 8)	intron (NM_001159513, intron 1 of 8)	1224.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	3.1404198323904	3.13026333351286	3.1408240285169	2.99717503118529	3.28608831891243	3.12811532848173	3.07074975953729	3.01812672928347	0.155736834594992	0.781329525011599	0.914858982946737
Merged-chr12-100089452-4	chr12	100089323	100089523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22908.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	7.32353931577493	7.21405135680292	7.74334727886337	7.58348785840074	6.83497329273441	7.09019015015303	7.59758181231854	7.39990083567779	-0.30301294293197	0.197816330100704	0.499140586391181
Merged-chr16-3743453-1	chr16	3743353	3743553	+	1000.0	f0_balb.idr	promoter-TSS (NM_148924)	promoter-TSS (NM_148924)	-646.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	5.61339112513654	5.65633444521547	5.5043537291657	5.92448107074336	5.52805018115191	5.76259624737404	5.29322712682578	5.80509943145164	-0.155929094247131	0.586370050336663	0.818595756960672
Merged-chr9-110411707-4	chr9	110411608	110411808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3498.0	NM_001081043	104831.0	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	5.49037932203588	5.6173708255161	5.13671951426144	5.59972036213756	5.55602583964136	5.69362887818334	5.80451314353762	5.42992382468815	0.236127862589625	0.4089583407914	0.70476365964588
Merged-chr2-91723215-4	chr2	91723103	91723303	+	959.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6935.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	4.61385989899901	4.53508419472273	4.65020483327771	4.51868516592223	4.40653097551124	4.21165172456885	3.83532071006701	4.41701751020768	-0.779390915232511	0.0561707125508141	0.248087313766095
Merged-chr7-17063111-4	chr7	17062997	17063197	+	957.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162950)	promoter-TSS (NM_001162950)	-670.0	NM_001162950	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	4.23835545352279	4.17638936444051	3.94868597845084	4.32522761078784	4.23944975560759	4.070868529273	4.30293329854954	4.09957465660554	-0.0150552466259513	0.970619911812631	0.989469869568928
Merged-chr15-59412874-4	chr15	59412754	59412954	+	827.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	38656.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	4.37308947660432	3.83604793492345	4.17698525715619	3.86874735330398	3.72653882834872	3.84267379126377	4.07046435198745	4.1742965073009	-0.298960110321031	0.519069649854455	0.77984451962357
Merged-chr7-19399977-2	chr7	19399877	19400077	+	701.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286038)	promoter-TSS (NM_001286038)	-56.0	NM_146182	232943.0	Mm.213403	NM_146182	ENSMUSG00000040714	Klc3	BC017147|Klct	kinesin light chain 3	protein-coding	3.34351327842254	3.33619670333277	3.61844807394419	3.18400382655935	3.58587806043392	3.63230315735889	3.50125621423794	3.5135292399121	0.65270780781485	0.198302947834345	0.499800779736617
Merged-chr4-130784960-4	chr4	130784867	130785067	+	935.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7570.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	4.66127239845884	4.73661972406874	4.54275481709917	4.75342577592712	4.61649104763861	4.28527184259819	4.81516952705343	4.45382894753189	-0.260597351491929	0.475439445070409	0.752279743484865
Merged-chr2-5145968-4	chr2	5145869	5146069	+	954.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028804, intron 2 of 2)	MTD|LTR|ERVL-MaLR	8193.0	NM_028804	74186.0	Mm.274715	NM_028804	ENSMUSG00000026676	Ccdc3	2310045O21Rik	coiled-coil domain containing 3	protein-coding	4.34466300894171	4.6028219748409	4.77885621333372	4.86368637584205	4.89781196160584	4.66872348118642	4.89423558425861	4.947361760402	0.373247303148673	0.293505036525738	0.606008746948365
Merged-chr13-37847776-4	chr13	37847687	37847887	+	925.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	20394.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.76683498345184	4.67708377688485	4.69584101152998	4.765671767489	4.49126905799895	4.62755158054122	4.63644364458806	4.15056726576068	-0.52655777481612	0.148754130673401	0.430682693175785
Merged-chr16-95731144-2	chr16	95731044	95731244	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28737.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	3.01759865701809	2.84940906697177	2.90276776405266	2.29331208750913	3.04116031857314	2.81727933516614	2.76677170423096	2.77499244634402	0.245600675068454	0.74096925974415	0.898139463026673
Merged-chr18-46311922-4	chr18	46311814	46312014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160399)	promoter-TSS (NM_001160399)	14.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	7.24792171140232	6.90262288597286	6.98377892256593	7.05642808070459	7.16544426583341	7.22316860094116	7.21290962758065	6.78484849381656	0.0793914725764668	0.69706242925148	0.877588245780482
Merged-chr11-107417419-4	chr11	107417328	107417528	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	53292.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	5.28217449835119	5.11459437062865	5.00587342239247	4.9587974058367	4.8253100542669	5.14478163062167	5.01556781833033	5.00250274099082	-0.182573661983544	0.563794373296067	0.806486928766928
Merged-chr5-90703063-3	chr5	90702961	90703161	+	741.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56237.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	3.57469699450349	3.73744206141923	3.86802782258449	2.85883218553766	3.74447163938593	3.63877388871461	3.6133674271361	3.33429858528665	0.0626524838698613	0.918716024720675	0.970112625083531
Merged-chr7-63911065-4	chr7	63910968	63911168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-5789.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	7.02720888432782	6.92545170686786	6.75427614021351	6.84790277920752	6.59617816885504	6.94546882290515	7.09380731299518	6.25643429425401	-0.186539284166016	0.441244325072603	0.728396857622944
Merged-chr1-132139723-4	chr1	132139570	132139770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008795)	promoter-TSS (NM_008795)	15.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	5.7232270721062	5.71616448304545	5.83858829589304	5.72190904143758	5.046886627479	5.44764442742431	5.87215795148169	5.42506531943052	-0.472229199798387	0.116154840708698	0.377075323577067
Merged-chr9-83599646-4	chr9	83599540	83599740	+	970.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172507, exon 4 of 4)	3' UTR (NM_172507, exon 4 of 4)	51302.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	4.96564464004956	4.30661765642274	4.78844705437967	5.44485153181515	4.92493812863372	4.29745230246368	5.03718126359289	4.92944800674201	-0.248736807209328	0.572232715166679	0.811143909621735
Merged-chr11-117194645-4	chr11	117194589	117194789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4972.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	7.43284153098344	7.48116491143947	7.5465848769429	7.37388864751064	7.68404854288887	7.58152054374593	7.65278509709471	7.52333530917231	0.212909218931681	0.208194380956273	0.512415900487087
Merged-chr6-34994836-1	chr6	34994736	34994936	+	541.0	f0_balb.idr	Intergenic	Intergenic	-16837.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	2.66636014343461	2.57692487271378	2.78443680454907	2.61863740992259	2.35721193302481	2.4959028426207	2.65690744967277	2.60227236377137	-0.70636500923046	0.308292509100671	0.620692213194451
Merged-chr17-31039822-4	chr17	31039716	31039916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17878.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	7.55368189308452	7.58457544062943	7.25239687829159	7.35302715032358	7.59360494694542	7.34974563526101	7.22730004461766	7.25831829530097	-0.0903004503085392	0.641082348676524	0.848590400530615
Merged-chr12-31826052-1	chr12	31825952	31826152	+	634.0	f0_balb.idr	intron (NM_001163126, intron 11 of 22)	intron (NM_001163126, intron 11 of 22)	-112126.0	NM_175191	73010.0	Mm.441517	NM_175191	ENSMUSG00000044067	Gpr22	2900068K05Rik|AW061316	G protein-coupled receptor 22	protein-coding	2.73334855552078	2.85897465949207	2.78897282934055	2.89785486929402	2.33772366277888	2.35449079985608	2.4065686245843	2.48158855070939	-2.91621344221498	0.000624932321605245	0.00922099040620641
Merged-chr13-60724190-4	chr13	60723955	60724155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 11 of 26)	(CA)n|Simple_repeat|Simple_repeat	62309.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	6.83323445206761	6.71113729823527	6.90450962560786	6.52475439796711	5.76256799881058	5.91763946064711	5.42178877657674	5.73057079616855	-1.56474923549194	5.20017548399936e-10	3.51179592766215e-08
Merged-chr5-146777251-4	chr5	146777133	146777333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	17723.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	6.48042480932933	6.11067303183721	6.36256496707674	6.09348556485631	6.45544161184101	6.50214107005013	6.32999241047392	6.42734472652246	0.26039274094222	0.25255478136827	0.563830153467744
Merged-chr6-135166848-4	chr6	135166781	135166981	+	911.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013546, intron 1 of 3)	intron (NM_013546, intron 1 of 3)	1334.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	3.88563251304619	4.16835631358485	3.94060452728572	4.00685004088891	4.33442617406132	4.51829809672985	4.21196532791013	4.22824825299593	0.814385992834757	0.0438912573862235	0.213455575942471
Merged-chr12-110816988-4	chr12	110816882	110817082	+	888.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011973, intron 4 of 11)	intron (NM_011973, intron 4 of 11)	23957.0	NM_011973	26448.0	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	4.44469909910276	4.4983217242635	4.56481397142221	4.62921600480542	4.38706529289098	4.18424217450085	4.33985678768288	4.48359197341298	-0.433186715856718	0.243535577468788	0.554604088569207
Merged-chr6-47877595-4	chr6	47877524	47877724	+	978.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146175)	promoter-TSS (NM_146175)	69.0	NM_146175	101095.0	Mm.440186	NM_146175	ENSMUSG00000025821	Zfp282	AI449432|C81429|E430019K09Rik|HUB1	zinc finger protein 282	protein-coding	5.68479452681324	5.8162976662372	6.02927858517853	6.27746528000562	5.57645853167154	5.28280014134939	5.95783695933143	5.83043154320949	-0.486253465788316	0.101236952316474	0.349260615981692
Merged-chr12-98628175-4	chr12	98628061	98628261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289572)	promoter-TSS (NM_001289572)	19.0	NM_001289574	104871.0	Mm.210053	NM_178914	ENSMUSG00000021007	Spata7	AI661438|B230306G18Rik|HSD3	spermatogenesis associated 7	protein-coding	6.42329607073269	6.44686503955225	6.50711725133399	6.17814112731581	6.11008130584246	6.47484819370775	6.47382714081465	6.36751352951321	-0.0400099243419884	0.863424789953602	0.948591391532472
Merged-chr5-136971016-3	chr5	136970929	136971129	+	600.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021719, intron 1 of 4)	intron (NM_021719, intron 1 of 4)	3160.0	NM_021719	60363.0	Mm.87202	NM_021719	ENSMUSG00000001739	Cldn15	2210009B08Rik|BB107105	claudin 15	protein-coding	3.68921740822317	3.54069921081393	3.24053205828866	3.27566758234101	3.6326488916522	3.54275445877077	3.41472952893315	3.63928495062188	0.401077411098562	0.435327844875213	0.724523208691715
Merged-chr15-83033356-4	chr15	83033252	83033452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271411)	promoter-TSS (NM_001271411)	45.0	NM_001271412	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	7.41971692287081	7.36187085011585	7.26152635719899	7.36360738987274	7.05913910886199	7.07150953555776	7.1260822223395	7.17977970536788	-0.333768767547946	0.0599434250475696	0.258322519311071
Merged-chr11-98359518-3	chr11	98359421	98359621	+	943.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021547, intron 1 of 14)	intron (NM_021547, intron 1 of 14)	1153.0	NM_021547	59045.0	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	3.85106907879673	3.8726729089631	4.12385201590237	4.09678993818467	3.81989178171185	3.74941134875175	3.49500507697082	3.94664815272853	-0.662794132167704	0.154860521326478	0.440269481011378
Merged-chr14-57701989-4	chr14	57701892	57702092	+	813.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015771, intron 3 of 7)	intron (NM_015771, intron 3 of 7)	32426.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	3.76708316603251	4.05766685273963	3.70933233704689	4.31367215761783	3.94116942464596	4.1482659961737	4.00802279983782	3.92606174262097	0.00012889025787315	0.999780218147108	0.999878549815841
Merged-chr9-22117172-4	chr9	22117081	22117281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357309)	promoter-TSS (NM_001357309)	14.0	NM_001357311	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	6.86944610886513	6.97042676545003	6.55049679495553	6.96581495096918	7.08116460289919	6.93488376853489	6.66366800685619	6.89239879251533	0.0680599693564387	0.750893755594105	0.901891036911221
Merged-chr15-12211680-4	chr15	12211574	12211774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 1 of 15)	intron (NM_001356498, intron 1 of 15)	6646.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	7.43990270734692	7.78121578178082	7.66248431921698	7.40477567110199	7.44959305127015	7.72943481480859	7.4972912236883	6.93045511671613	-0.194055242813624	0.377998697257766	0.680636285273186
Merged-chr12-76553189-4	chr12	76553081	76553281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	-5256.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	6.92875817518004	6.69715133996116	7.16912110612103	7.02607349330745	6.38155293890065	6.6421675421264	6.58411547892719	6.66055816181623	-0.573522335013157	0.00767764942919312	0.0652990092867173
Merged-chr3-100703417-4	chr3	100703294	100703494	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17921.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	5.04077826793702	4.59672637377297	5.30566586984449	5.36356033113597	5.6691607098149	5.41939571344408	5.15492394748863	5.54500257193516	0.618029223129559	0.0719985027690414	0.28833022553154
Merged-chr10-41682933-4	chr10	41682838	41683038	+	941.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 5 of 47)	B3A|SINE|B2	33525.0	NM_001358562	75973.0	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	4.77905411206049	4.84029573557727	4.62397679956914	4.75376832062415	4.6882827305641	4.79806363574504	4.68234946371302	4.84788890740311	-0.00250955712764345	0.993972805119482	0.997739983081298
Merged-chr10-13201075-4	chr10	13201004	13201204	+	895.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-7967.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	4.14115375223354	4.23732428482556	4.24325145848436	4.24963977427398	4.47337027304166	4.42092237124851	5.07275457238178	4.42258552080687	0.929097596359533	0.0198876996918066	0.127621365501317
Merged-chr10-87696645-3	chr10	87696556	87696756	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-161609.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	4.34193188251159	4.36502363340053	4.34263776683249	3.49706041926431	6.34897371747362	6.40798670704979	6.67286163587432	6.48697026722146	4.54926154979332	6.78529862325763e-41	3.01856731690534e-37
Merged-chr6-7753357-4	chr6	7753243	7753443	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60161.0	NM_012055	27053.0	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	5.49513828769021	5.18969601961927	5.54703945794437	5.76426799324154	5.30434069634285	5.24472553649015	4.96825699457396	4.98860961081702	-0.695776704086047	0.0270268349176171	0.156414593267832
Merged-chr5-111330663-4	chr5	111330593	111330793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301666)	promoter-TSS (NM_001301666)	-4.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	7.59533292333174	7.80242419550337	7.69372427863624	7.35536568875119	8.10190069805515	8.31086710325866	8.2352601367262	7.97551745346863	0.709732247069097	0.000109848541099886	0.00219508964260213
Merged-chr8-112927037-4	chr8	112926935	112927135	+	921.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140227.0	NR_033584	791378.0	Mm.350576	NR_033584	ENSMUSG00000110541	Gm10280	-	predicted gene 10280	ncRNA	4.50545853729784	4.63910827759745	4.69091450416599	5.30376797557507	5.17889446093104	4.82762950244878	4.97272101922985	5.5592121359035	0.609460368084109	0.129144569370719	0.399912177118176
Merged-chr5-90853375-3	chr5	90853264	90853464	+	915.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37881.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	4.51310916872397	4.70453541264314	5.13402079749548	5.4364749890411	4.09495737568431	3.71956584879246	4.05247367067997	4.23151610482357	-2.26068500036976	1.58241159743881e-06	5.30543924136113e-05
Merged-chr10-17669624-4	chr10	17669501	17669701	+	976.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53627.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	5.29477492908501	5.22689156476701	4.96618495566823	5.5164840572864	5.1126618449735	5.40900270304886	5.11641691150329	4.80348993997027	-0.290748597471123	0.377205266749469	0.679896016256279
Merged-chr19-10904989-3	chr19	10904885	10905085	+	824.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134129, intron 15 of 15)	intron (NM_134129, intron 15 of 15)	6340.0	NM_001253844	28000.0	Mm.491104	NM_134129	ENSMUSG00000024735	Prpf19	AA617263|AL024362|D19Wsu55e|NMP200|PSO4|Prp19|Snev	pre-mRNA processing factor 19	protein-coding	4.07571229989943	3.70277747153847	4.03480096502733	3.92985624330793	3.94709361920385	3.43253317647083	3.56956132528435	3.69549018951562	-0.741270909981877	0.136574111473191	0.411042630338623
Merged-chr16-21411891-4	chr16	21411772	21411972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11246.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	5.79860822161257	5.76125749326726	5.79962820144627	5.64328915594504	5.75621771670627	5.5754908549245	5.51862816784995	5.48522099086989	-0.244061295647222	0.35229973366178	0.659472457927471
Merged-chr5-141038561-4	chr5	141038459	141038659	+	861.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37963.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	5.85475942572511	5.28341236768308	5.93800324128591	5.92318681203193	4.80090988053776	5.1971587743363	5.71526862430707	5.56681980383728	-0.712802525407538	0.0403305557745748	0.202840320941816
Merged-chr15-68175890-4	chr15	68175786	68175986	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152182, intron 6 of 13)	intron (NR_152182, intron 6 of 13)	82970.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	6.27160024076022	6.04271156046597	6.47647274916023	6.56010522167454	6.18704736494616	5.56009774818723	6.1649178172843	6.28650687783879	-0.41772855582908	0.124631285429191	0.391951700865256
Merged-chr11-101543677-4	chr11	101543565	101543765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009764, intron 2 of 22)	intron (NM_009764, intron 2 of 22)	8290.0	NM_009764	12189.0	Mm.244975	NM_009764	ENSMUSG00000017146	Brca1	-	breast cancer 1, early onset	protein-coding	6.35980590762023	6.3184946443816	6.0143390697399	6.21694519326512	6.51215665021467	6.46344039354428	6.38048811052311	6.45896352810687	0.332306703539068	0.130129588107928	0.401547403300569
Merged-chr3-27213166-4	chr3	27213056	27213256	+	941.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	30152.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	4.37645925405241	3.97364793349489	4.76465819321313	4.58007373381254	4.28724554533178	4.31088927871534	4.67324552428052	4.82629234584256	0.189404298642389	0.658300866011772	0.85775055542674
Merged-chr11-110430803-4	chr11	110430714	110430914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	31712.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	6.47354046240878	6.78489524865258	6.34588863549546	6.24236406330558	6.90967508303418	6.87441949702313	6.67882041699901	6.70827947439852	0.474519605370619	0.0361723123242644	0.189080489015849
Merged-chr9-83536286-4	chr9	83536167	83536367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12071.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	6.37372920442173	6.05575664416546	5.86648771781695	6.67814576444452	6.1040606914991	5.80038267311017	6.12457535871604	6.09055890190932	-0.398847760121313	0.153774237839479	0.438666140818199
Merged-chr7-67953197-4	chr7	67953090	67953290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 1 of 20)	CpG-13221	933.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	5.38504210466098	5.54744782514551	5.17512708118655	5.30394452686551	5.00567291577507	5.50203007176988	5.04838792187053	5.03350722110488	-0.375550798478497	0.227664097577246	0.536373057111438
Merged-chr15-80561317-4	chr15	80561212	80561412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163189)	promoter-TSS (NM_001163189)	-842.0	NM_001163189	383075.0	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding	5.59769847092305	6.0402217632792	5.67841136993386	5.77626656060689	5.73323930632711	5.92764911264591	5.45667833019657	5.59473927432319	-0.163369963517466	0.55084729523853	0.79871086511744
Merged-chr16-33261798-3	chr16	33261715	33261915	+	823.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080557, intron 1 of 13)	RMER4A|LTR|ERVK	10359.0	NM_080557	69150.0	Mm.28196	NM_080557	ENSMUSG00000022808	Snx4	1810036H14Rik|AI037066	sorting nexin 4	protein-coding	3.4424774920684	3.16722171179982	3.49309842160647	3.36072224099527	3.2111041521383	3.39222410983198	3.08291797533898	3.21845208877777	-0.517164562212214	0.343154498214238	0.651847936494656
Merged-chr4-135856039-4	chr4	135855969	135856169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010178)	promoter-TSS (NM_010178)	-2.0	NM_001284196	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	7.52219908624909	7.90271997177912	7.32215494335094	7.26841528570605	7.78675246975095	8.01193712936169	7.40002517584564	7.77760897280834	0.309747580536198	0.161951281002422	0.451016480710175
Merged-chr8-35639218-3	chr8	35639122	35639322	+	920.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	MLT1A|LTR|ERVL-MaLR	-50202.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	3.48861478086952	3.35741026997137	3.48909086359567	2.4265587764642	5.43208154735018	5.06267898586772	5.91953852920373	5.51077528023995	9.27135552282023	6.30905243236404e-23	3.01390632941772e-20
Merged-chr16-20671963-4	chr16	20671858	20672058	+	797.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304432)	promoter-TSS (NM_001304432)	-769.0	NM_145941	208643.0	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	3.9820396750046	3.90472144475367	3.66442278161318	3.82757090215069	3.87623659323207	4.15222019562788	3.96536066081436	3.98022113415624	0.397421386925267	0.360193009403407	0.66568674445473
Merged-chr4-108623855-3	chr4	108623780	108623980	+	757.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177045, intron 3 of 24)	intron (NM_177045, intron 3 of 24)	3924.0	NM_177045	319965.0	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	3.14442037204643	3.03776920293499	3.35697113929015	3.46443232871268	3.11838400089722	2.92437852143766	2.94993705780582	2.95762004807037	-1.11019496182077	0.0680280369052534	0.278429511752
Merged-chr8-121652107-4	chr8	121651923	121652123	+	824.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080855)	promoter-TSS (NM_080855)	-90.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	2.80516301122674	3.01602121398732	2.66834151787072	2.57000792055433	2.8175674428871	2.91383207979945	3.03027145869118	2.92821146402572	0.691161725455989	0.276477203945593	0.588504895079849
Merged-chr7-4149934-4	chr7	4149843	4150043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175529)	promoter-TSS (NM_175529)	-71.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	7.60938833439398	7.44747426752947	7.23762048863854	7.38666617400234	7.50931010668074	7.81292159496837	7.53026054357941	7.5622904679914	0.238926477184198	0.193093005898683	0.493223536455264
Merged-chr8-70605802-4	chr8	70605698	70605898	+	927.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133772, intron 1 of 16)	intron (NM_133772, intron 1 of 16)	2516.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	4.31770034771337	4.1002483538222	4.1698083454649	4.27129436795034	4.77799628238323	4.5394518862625	4.66028164572537	4.7810871711786	1.07837547477611	0.00316712230065587	0.033288924725101
Merged-chr8-117264734-4	chr8	117264630	117264830	+	869.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	7711.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.52622861880538	4.10650751350663	4.28142588783942	4.33114921029114	4.02014004670159	4.40935427662775	4.42951072395352	4.40729386776068	0.000414909385402595	0.999178639060657	0.999578096120658
Merged-chr3-109747792-4	chr3	109747694	109747894	+	833.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	173787.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	3.25270692385897	3.73628075771089	3.6178660111244	3.43873524473495	3.88941358957128	3.50050277776852	3.70406866527626	3.71771270221534	0.608191950505162	0.226752715787364	0.535390087036827
Merged-chr5-45491595-4	chr5	45491486	45491686	+	877.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	-1788.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	4.42457249537944	4.76248380796181	4.42525358109727	4.58392877066655	4.20163155779779	4.64374982823604	4.85047219758397	4.55042052988657	0.0276919948926959	0.943011491074082	0.97939909270739
Merged-chr13-15853292-4	chr13	15853163	15853363	+	832.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155430, intron 3 of 3)	MLT1A1|LTR|ERVL-MaLR	46020.0	NR_046131	328190.0	Mm.446957	NR_046131	ENSMUSG00000113338	A530046M15Rik	A530046M15	RIKEN cDNA A530046M15 gene	ncRNA	3.38366336979251	3.75882419905028	3.38403822435337	3.65018283298258	4.21177125378449	3.68733552285108	3.71758051343583	3.78090835076656	0.932038135849529	0.0674910821928848	0.277226335817012
Merged-chr7-110018264-4	chr7	110018144	110018344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362172)	promoter-TSS (NM_001362172)	-7.0	NM_181517	233726.0	Mm.222328	NM_181517	ENSMUSG00000066232	Ipo7	A330055O14Rik|C330016G14|Imp7|Ranbp7	importin 7	protein-coding	6.99757568128029	6.83934048586274	6.78111276207289	6.89684485776701	6.98178453675854	7.30540827743749	7.16945710985622	6.96863395398063	0.313307659727482	0.110276920800623	0.366691625977182
Merged-chr1-172206345-2	chr1	172206255	172206455	+	883.0	f0_balb.idr|f0_c57.idr	intron (NM_001329871, intron 1 of 3)	intron (NM_001329871, intron 1 of 3)	449.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	4.53037625871487	5.28036464767649	4.69472397121735	4.47723477693518	4.43071034666275	4.74985639144858	4.81611606731381	4.34145528676966	-0.402653294595111	0.326601477514155	0.638101135996362
Merged-chr8-124242382-4	chr8	124242255	124242455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139272, intron 1 of 15)	MIR|SINE|MIR	10961.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	7.71376900272534	7.6666049570974	8.08790830010958	7.93654369043709	8.05995357939765	8.1872593714084	8.26849708818505	8.14415513931952	0.386897889851216	0.0265433381260621	0.154606010124944
Merged-chr12-83922081-4	chr12	83922020	83922220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073563)	promoter-TSS (NR_073563)	-186.0	NR_073564	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	8.57232830447196	8.63839085118655	8.42436616762333	8.34727702443803	8.49957487694125	8.9589368871408	8.69648523823727	8.60515003299204	0.251398202233786	0.141383847152342	0.41833891155872
Merged-chr11-110537820-3	chr11	110537706	110537906	+	826.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58466.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	3.71963352248014	3.38714054833974	3.20010527958966	3.31158560102595	3.82465423560168	3.73961949377058	3.55416998623953	3.56663175398092	0.864660391508069	0.0901266521704446	0.327789265702753
Merged-chr8-126593367-4	chr8	126593266	126593466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164598)	promoter-TSS (NM_001164598)	70.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.82377488312862	6.17810214617069	6.23624651935619	5.70825336596704	6.2821483405807	6.42899650425689	6.22246157052233	5.87076284522958	0.34639908796255	0.195576263767171	0.49638795965428
Merged-chr1-36447101-1	chr1	36447001	36447201	+	615.333313	f0_balb.idr	Intergenic	Intergenic	-1830.0	NM_001310517	214895.0	Mm.287854	NM_001013374	ENSMUSG00000001143	Lman2l	A630028F14Rik|VIP36-like|VIPL	lectin, mannose-binding 2-like	protein-coding	3.27639660712999	3.35229796762893	3.58594677096618	3.23380912523308	3.2083497082347	3.38985928981595	3.20576690688433	3.08781856631588	-0.506213942617616	0.356475246877496	0.662883007207157
Merged-chr4-59096592-4	chr4	59096496	59096696	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61440.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	5.17171788591319	4.64086940703104	4.70396615097237	4.8116006358809	4.46090507473881	4.95670449657352	4.86822968338318	4.98920938689885	-0.0393091715684725	0.913803131392928	0.967694418307962
Merged-chr7-42642620-4	chr7	42642544	42642744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242388)	promoter-TSS (NM_001242388)	-40.0	NM_001242388	208111.0	Mm.387841	NM_001034857	ENSMUSG00000074158	Zfp976	9830147E19Rik|C330019L16Rik	zinc finger protein 976	protein-coding	6.22383189026193	5.27617791967787	5.67719142131696	5.95685865933424	6.00249557069599	6.12307348404069	6.24475814148053	5.8517212638529	0.363700518050199	0.221927344651364	0.530047563717821
Merged-chr2-91948255-1	chr2	91948155	91948355	+	1000.0	f0_c57.idr	intron (NM_001166597, intron 1 of 31)	intron (NM_001166597, intron 1 of 31)	2093.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	5.50760067695654	5.08441404564027	5.35920350679693	5.91640497563863	5.88706653552961	5.4727359845726	5.77859706694826	5.63822437149847	0.308324212883374	0.335646689121307	0.645927430703489
Merged-chr12-91766480-4	chr12	91766379	91766579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	19957.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	8.92566735904479	8.85834388272495	9.4811406220599	9.42167926548561	8.9856271059422	9.02199851245342	9.41828293467871	8.89839473265537	-0.132969618971365	0.515667822774538	0.777658847799081
Merged-chr17-26512598-4	chr17	26512478	26512678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4106.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	5.57236122205462	5.33520151028274	5.49627647129651	5.4605647610869	5.05497027973952	5.08109140285683	5.46856622108428	5.49240275375569	-0.325868155639532	0.273041826534099	0.584471435428565
Merged-chr13-23622558-4	chr13	23622491	23622691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015787)	promoter-TSS (NM_015787)	-33.0	NM_015787	50709.0	Mm.170587	NM_015787	ENSMUSG00000051627	Hist1h1e	H1-4|H1.4|H1e|H1f4|H1s-4|H1var2	histone cluster 1, H1e	protein-coding	7.3047325977164	7.1891960964925	6.79785576884353	7.25905982192149	7.30286034268382	7.31614473862284	7.7760417710782	7.5888326200384	0.470888748047551	0.0266981088357148	0.155203409876426
Merged-chr6-17409881-4	chr6	17409790	17409990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54067.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	7.89250236318041	8.15778158982438	7.83348887501548	7.89492683295202	8.22381061185715	8.29342314245715	8.06568648579058	7.83592477045644	0.215119147699255	0.233866093786826	0.543572188141735
Merged-chr11-3197794-8	chr11	3197694	3197894	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4331.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	4.23646868651751	4.32728783643362	4.85920101390458	4.01207556594985	4.61972074802615	4.69928360721373	4.62241147694794	5.2227501060389	0.930024924520532	0.0274533254942273	0.157970917975231
Merged-chr15-97520181-4	chr15	97520057	97520257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	185665.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	6.15866893898475	5.91783565015002	6.89392272097768	6.75879548969315	5.40732727444263	5.29051947079537	6.047361710981	5.82156634266152	-1.27974170478663	0.000117807983963548	0.00232412818473986
Merged-chr4-101650587-4	chr4	101650468	101650668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175036, intron 1 of 3)	intron (NM_175036, intron 1 of 3)	2785.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	6.00121063075866	5.87918351487348	5.38455198884899	5.9303706724529	5.68575953583963	6.19545198900699	5.62385074191589	5.62126699622866	-0.0449986539125806	0.877969205956117	0.954314763971155
Merged-chr14-55677701-4	chr14	55677585	55677785	+	983.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177992, intron 8 of 9)	intron (NM_177992, intron 8 of 9)	4132.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	5.65564788913085	5.32173265068492	5.44901413720207	5.59213777468474	5.31487318319352	5.11816172219167	5.67450121412804	5.44520388859054	-0.193865987498493	0.508262831983392	0.773396125844835
Merged-chr10-59235371-4	chr10	59235276	59235476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	13454.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	5.66145997094372	5.96949262180328	6.0317100492073	5.82612346825226	5.60606869813309	5.96484348407116	5.55146492852321	5.90138410208979	-0.191920847831976	0.469816363036825	0.748648947719156
Merged-chr19-29572476-4	chr19	29572363	29572563	+	908.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081319, intron 8 of 25)	Tigger7|DNA|TcMar-Tigger	50181.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	4.0906812556953	3.709857622365	3.7427039495248	4.12269054699134	4.03863997587149	3.86200819560466	3.83679831994395	4.17286211473623	0.124502089905837	0.785260642815792	0.916435002431157
Merged-chr9-120571502-4	chr9	120571384	120571584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025974)	promoter-TSS (NM_025974)	-33.0	NM_025974	67115.0	Mm.289810	NM_025974	ENSMUSG00000025794	Rpl14	3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14	ribosomal protein L14	protein-coding	7.6763904593112	7.66978910864042	7.06056352908813	7.53141959718902	8.06668446468747	8.05660420185595	7.88308733844861	8.03459964572749	0.654637333663559	0.000722615510259865	0.0103875584664665
Merged-chr8-109564086-4	chr8	109563990	109564190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151644, intron 1 of 26)	intron (NR_151644, intron 1 of 26)	1771.0	NR_151644	64340.0	Mm.23705	NM_178380	ENSMUSG00000037993	Dhx38	5730550P09Rik|AI325984|AW540902|Ddx38|KIAA0224|Prp16	DEAH (Asp-Glu-Ala-His) box polypeptide 38	protein-coding	6.57378338085343	6.86606103717714	6.14165279670566	6.59869944789249	6.46299072598749	6.6690686785812	6.67663174444809	6.61717630621634	0.0400348511969747	0.864795825516721	0.949269846298694
Merged-chr15-64059229-4	chr15	64059133	64059333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	531.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	7.07597777960562	7.1311854091548	7.18329738296594	7.3709139145054	7.17917045643319	7.24207790695267	7.14730216347208	7.46924305764141	0.0773242870668428	0.688183459420987	0.872645510806949
Merged-chr11-87639338-4	chr11	87639237	87639437	+	932.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045527, intron 5 of 5)	CpG	22173.0	NM_001045527	327992.0	Mm.390371	NM_001045527	ENSMUSG00000070345	Hsf5	Gm739|MLZ-220	heat shock transcription factor family member 5	protein-coding	4.3809733196168	4.62480830117977	4.99618549794145	4.64949045454174	4.33212294554924	4.36297314205504	4.61226449752051	4.5111749402553	-0.496730597098251	0.18985704548273	0.488976178326708
Merged-chr1-45795365-7	chr1	45795242	45795442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028599, exon 1 of 21)	5' UTR (NM_028599, exon 1 of 21)	176.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	5.88363762343992	5.77126929093376	6.09840194309721	5.80371870665284	5.68591651485531	6.03683505018057	6.12441856155128	6.05413330880619	0.141759866563041	0.581673394087906	0.816420227529328
Merged-chr4-122853813-4	chr4	122853691	122853891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008917, intron 6 of 8)	intron (NM_008917, intron 6 of 8)	17564.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	6.67955870932095	6.75497519123011	6.33883546639474	6.46824378487249	6.75557980146404	6.99765308451391	6.67612535231747	6.64568695353921	0.295679306754706	0.176014398025521	0.470961914031223
Merged-chr5-114604495-3	chr5	114604393	114604593	+	736.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004180, intron 2 of 2)	intron (NM_001004180, intron 2 of 2)	36242.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	4.25830593747444	3.84513146464163	3.95696046279306	4.17477743344934	3.75787014534649	3.80624049157182	4.07698377178946	3.74371962504902	-0.616608531168618	0.17234191179617	0.465704602700716
Merged-chr10-51422441-1	chr10	51422341	51422541	+	1000.0	f0_balb.idr	Intergenic	RLTR13D3|LTR|ERVK	-58171.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	4.3310149203417	4.35817407149569	4.24514147303431	4.27756363843079	4.1718564558226	4.27731331872314	4.18146277365535	4.19702208486337	-0.242029958759139	0.529053718389069	0.785408513162467
Merged-chr11-95841531-4	chr11	95841474	95841674	+	878.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284393)	promoter-TSS (NM_001284393)	-721.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	3.84812631192359	4.12257131119604	3.62292950333743	3.41614393577633	3.60603978113604	4.12109172662493	4.02277321391038	4.16609033270401	0.607725919348702	0.229029952938978	0.53796264588342
Merged-chr1-160211842-4	chr1	160211759	160211959	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009786, intron 1 of 5)	intron (NM_009786, intron 1 of 5)	1033.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	5.27710368204036	5.25056239488751	5.1266906802476	5.67741427586055	4.69392744240502	4.85038976152159	4.96702786247656	4.83640062254682	-1.03346725254689	0.00180294508068244	0.0215635211358617
Merged-chr1-165661908-4	chr1	165661797	165661997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 2 of 5)	intron (NM_001038846, intron 2 of 5)	-27356.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	8.58938196407281	8.8273788828795	8.80600084555667	8.6801886910295	8.51299433035006	8.40147607198558	8.51397340884256	8.17433810133139	-0.399951719247575	0.012967314906057	0.0948613060327058
Merged-chr13-3769598-1	chr13	3769498	3769698	+	742.5	f0_balb.idr	Intergenic	Intergenic	34720.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	3.21717770600003	2.94929254154189	2.94404489140304	3.26752134829863	2.74263140207102	2.77883249194309	2.93358117616781	2.67312250537451	-1.49061578077618	0.0228092477179446	0.139503303257912
Merged-chr3-105894848-4	chr3	105894716	105894916	+	965.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-9605.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	4.11644191142431	4.28662215249908	4.31053896627003	4.48943847069801	4.34384796851251	4.13318893546232	4.73601553787034	4.47585639966036	0.280157127573049	0.488704951148218	0.761377570765248
Merged-chr5-121593634-4	chr5	121593539	121593739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001308450, exon 1 of 11)	5' UTR (NM_001308450, exon 1 of 11)	185.0	NM_009656	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	6.17789969318733	5.40383650567472	6.10381797455294	6.06836438475667	5.83898660277061	5.79069592604111	6.01331143563107	5.76915080357672	-0.185725311452994	0.510941362655834	0.775074357160952
Merged-chr9-123935580-4	chr9	123935473	123935673	+	959.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33119.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	5.40253636109288	5.4465255478182	5.88930555546597	5.95410884686116	5.68220638818551	4.9547976197727	5.22023634570387	5.24238134544683	-0.669159016798298	0.0446607652992237	0.215767909674434
Merged-chr8-33593858-1	chr8	33593758	33593958	+	830.0	f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-5763.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	2.22746596081703	2.18731789352681	2.38497513026247	2.27535281897895	2.71918364340766	2.63429414969309	2.70195880480578	2.8751942421502	2.61167457866991	0.000587931612079287	0.00880092202233262
Merged-chr16-30922791-4	chr16	30922683	30922883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	158649.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	6.17584121339553	6.04738679536296	5.95505471145028	5.91690539560858	5.99900607814958	6.10782479452946	5.54381506318707	5.76084619247982	-0.233123641184995	0.371095653730082	0.675168812423656
Merged-chr1-75218580-6	chr1	75218481	75218681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313723, intron 1 of 3)	intron (NM_001313723, intron 1 of 3)	713.0	NM_001313723	22145.0	Mm.1155	NM_009447	ENSMUSG00000026202	Tuba4a	M[a]4|Tuba4	tubulin, alpha 4A	protein-coding	4.7820609380454	4.65453463333077	5.41147000392768	5.37583282273732	5.2145015498073	5.19217651281762	5.30389621014082	5.1480855230108	0.190465054355476	0.58765024157496	0.819326924567384
Merged-chr11-110373227-4	chr11	110373129	110373329	+	783.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1b|LINE|L1	-25873.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	3.90234532715737	4.08303959252283	3.67403553072705	3.97216699195188	4.38187778151471	3.91378654977228	4.12351000763377	4.13949033943114	0.623267323866823	0.155692457108169	0.44149768553055
Merged-chr1-55029012-4	chr1	55028924	55029124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-1546.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	7.22478226550621	7.05837991023403	7.23688878352042	7.44078282391866	7.23644549472912	7.0542993862912	7.33337233864386	7.16526981003316	-0.0728594273389717	0.706381250887755	0.882026349021226
Merged-chr15-90323443-4	chr15	90323391	90323591	+	965.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-30219.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	4.7744221831103	4.19237376449514	4.37788195169881	4.81621770304869	3.99593847424594	3.98957690482257	4.02410425953143	4.45718174655709	-1.07246528707884	0.0144495099896258	0.102135220610881
Merged-chr9-44267084-4	chr9	44266998	44267198	+	901.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163742, intron 1 of 9)	intron (NM_001163742, intron 1 of 9)	1089.0	NM_001163743	270151.0	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	4.37099967112156	4.22915990608996	4.49577083195801	4.5306276757374	4.19518611794019	4.15060204936913	4.43520114988174	4.70907354905585	-0.0687662547598928	0.863406268197614	0.948591391532472
Merged-chr4-139430366-4	chr4	139430292	139430492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160319, intron 48 of 105)	intron (NM_001160319, intron 48 of 105)	49733.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	6.22134948844702	6.28423075593241	6.0527407283745	6.0401742388804	6.40262119751497	6.72714276521636	6.7281448193383	6.11468320275277	0.545330738498983	0.0265361767931256	0.154580450769939
Merged-chr5-146768956-4	chr5	146768858	146769058	+	643.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011669, exon 2 of 9)	exon (NM_011669, exon 2 of 9)	25998.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	3.366388990402	3.55750667791866	3.36678566384859	3.37766794711815	3.63870738215368	3.92034609990171	3.68809451257466	3.75027930948106	1.04978571216485	0.0287922595534421	0.163024057552824
Merged-chr11-22818601-4	chr11	22818480	22818680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41155.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	5.88249299140442	6.17135792697575	6.44825903070275	6.57056928308502	6.10679260846704	5.7922956490508	5.8536173049119	6.10366348122932	-0.509383787678814	0.0575514998058945	0.251779852777121
Merged-chr15-86169241-4	chr15	86169146	86169346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-16482.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	6.08583601359092	6.25230697726473	5.70341537071291	5.57127961136107	6.08963777719464	6.16006666278435	5.44604469126537	5.50055382035073	-0.130851172299682	0.683003864812813	0.870163506023883
Merged-chr9-123845328-2	chr9	123845228	123845428	+	605.849976	f1_balb.idr|f1_c57bl6.idr	intron (NM_148925, intron 1 of 18)	intron (NM_148925, intron 1 of 18)	6333.0	NM_148925	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	2.78433584828415	2.57960670907901	2.7177437409965	2.72207171730927	2.79808774947101	3.13422525793922	2.89785504612122	2.90752960873774	1.05488871998093	0.0901599402924166	0.327810749114653
Merged-chr7-67442523-4	chr7	67442428	67442628	+	998.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-69670.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	6.03227646410866	5.61334500616193	5.01540372164099	5.48839187198647	5.82642227010805	5.91005370156465	5.6582610938603	5.46652688230655	0.241182355949537	0.451775583165018	0.736246988273402
Merged-chr11-17013139-4	chr11	17013032	17013232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4414.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	4.90175638262923	5.12033189885635	5.17423961063547	5.00499158254086	5.17888672378385	4.53736004880068	5.51359575331907	5.0079290600656	0.112637499179338	0.751679706576575	0.902264711867851
Merged-chr16-91597802-4	chr16	91597705	91597905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030018)	promoter-TSS (NM_030018)	-125.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	8.17007434060141	8.38833934999571	7.93914834234225	8.06200191866982	8.24238551036445	8.25473232040679	8.22583114069799	7.98383908469748	0.0412138313781915	0.813691852344413	0.928035577529251
Merged-chr19-53476985-3	chr19	53476882	53477082	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12186.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	4.25677470961202	4.37274690054098	4.71215238920439	4.72895658124415	3.44973037275926	3.74280739193247	3.60622930521622	3.61715350637046	-2.79408480889751	3.2785304740845e-08	1.5651409833324e-06
Merged-chr4-134799476-4	chr4	134799389	134799589	+	942.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31485.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	4.66202364684777	4.78149453421881	4.4187253954412	4.35000458653364	4.46163276294211	4.50289813869953	4.71186730632343	4.45995820493748	-0.0422728681557662	0.909771288037968	0.966502185320198
Merged-chr13-5824384-4	chr13	5824283	5824483	+	871.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33709.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	4.4110482111961	4.06648690531818	4.23695595944262	4.74058442125813	4.04929680027813	4.5820970660498	4.30784689970344	4.13739081155866	-0.300397806091362	0.492290305870597	0.763381370780429
Merged-chr3-103805395-4	chr3	103805303	103805503	+	836.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040412, intron 4 of 4)	intron (NR_040412, intron 4 of 4)	2274.0	NR_040412	100503157.0	Mm.445554	NR_040412	ENSMUSG00000084997	Gm15471	-	predicted gene 15471	ncRNA	3.97576735453433	4.16747982251262	4.54014011350703	4.39906788649322	4.19885431359686	4.20541168826047	4.24861176684353	4.02733714772717	-0.298890933604681	0.471970495135819	0.750243152290688
Merged-chr15-9123206-4	chr15	9123118	9123318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 5 of 9)	intron (NM_013787, intron 5 of 9)	17236.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	5.81734673386239	6.37735210961663	6.37646664574551	6.57195904943909	6.56338654988881	6.47891092086517	6.68759385405014	6.63200625161078	0.38098110610741	0.123914194690614	0.390666338995867
Merged-chr10-8519042-4	chr10	8518947	8519147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177387)	promoter-TSS (NM_177387)	-222.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	6.7933162829231	6.70068690411188	6.86445256307905	6.96358240990378	6.66307528788127	7.10701489427032	6.82962153301177	7.20232252023133	0.166631988685407	0.444422755990299	0.730803662815541
Merged-chr17-15812596-4	chr17	15812483	15812683	+	906.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178615, intron 2 of 2)	intron (NM_178615, intron 2 of 2)	14003.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	4.83802996054597	4.36941744387196	5.0379226851694	5.30061437320435	4.96691054401245	4.77973965091193	4.53833473927288	4.51061309579545	-0.454773670037582	0.25885082789115	0.570619811033607
Merged-chr2-52742370-4	chr2	52742283	52742483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019667)	promoter-TSS (NM_019667)	-234.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	6.48815073667377	6.39919720337424	6.75749097432516	6.25671996381161	6.42245212806206	6.52539314608453	6.3163640895533	6.54936769493895	-0.0276329054400923	0.90408283890738	0.964516711899835
Merged-chr5-99729098-3	chr5	99729003	99729203	+	843.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030692)	promoter-TSS (NR_030692)	-43.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	3.81302406443578	3.48552358568819	3.61840774417184	3.67232754360826	3.88782475831967	3.50182153609443	3.43738881508045	3.44786766370352	-0.175032030082429	0.731489755173866	0.893664983754773
Merged-chr10-76237941-4	chr10	76237852	76238052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126571)	promoter-TSS (NR_126571)	-87.0	NM_133182	15468.0	Mm.32020	NM_133182	ENSMUSG00000020230	Prmt2	AI504737|Hrmt1l1	protein arginine N-methyltransferase 2	protein-coding	6.89881521215938	7.20071083874539	7.05168937639686	7.21272288404957	6.83748886326179	6.8740178849984	7.01613164939853	6.62675423295032	-0.361301710115346	0.0748471725892278	0.295089558974667
Merged-chr11-103101626-4	chr11	103101525	103101725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025988)	promoter-TSS (NM_025988)	33.0	NM_152813	72469.0	Mm.264743	NM_152813	ENSMUSG00000020937	Plcd3	2610205J15Rik|mKIAA1964	phospholipase C, delta 3	protein-coding	5.40139300992472	5.52896955343552	5.9457139094941	5.44970143691643	5.5533207137575	5.24707494249449	5.18600212678282	5.45629944187531	-0.369960200791775	0.219799398351976	0.527410375380775
Merged-chr2-124574115-8	chr2	124574027	124574227	+	908.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-36169.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.21097327850838	3.87384667677542	4.12886568433246	3.52426816955257	3.83055529584751	3.85205636016213	3.92808240998937	4.12619730877266	-0.0286230381753407	0.952528774923943	0.983136546703469
Merged-chr9-22388095-3	chr9	22387983	22388183	+	780.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028390, intron 1 of 23)	intron (NM_028390, intron 1 of 23)	1123.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	3.03602349888133	3.29815017773077	3.03634169089638	3.24498869559107	3.4378751514605	3.33302154426941	3.15190968223294	3.22030203359664	0.473915688044294	0.393895492400163	0.693084615297837
Merged-chr8-84639429-7	chr8	84639321	84639521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007578, exon 47 of 47)	exon (NM_007578, exon 47 of 47)	23431.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	7.26897776327902	7.61646630354462	6.41524750740979	6.89957948070995	7.77876899037291	8.27885013262944	8.00375913513184	7.49780396662686	1.04987453135844	0.000190258112326756	0.00348850648565331
Merged-chr19-47508877-4	chr19	47508793	47508993	+	917.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175360, intron 8 of 9)	intron (NM_175360, intron 8 of 9)	-4089.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	4.62038430157436	4.45471916545937	4.50120371836117	4.8547732854369	4.24596545708351	4.63244560715129	4.25460708331587	4.72748118368054	-0.347122515063755	0.374973336288413	0.678070908583733
Merged-chr18-79622468-4	chr18	79622374	79622574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-424421.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	5.57345510744834	5.51300582276083	6.04705228622877	6.12059982185118	5.67801377919037	5.57030021428239	5.95585386365272	5.9614103298718	-0.0892946000422717	0.759984214482111	0.905851390428209
Merged-chr13-112661247-6	chr13	112661103	112661303	+	829.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 1 of 14)	intron (NM_178746, intron 1 of 14)	437.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	3.65973002028388	3.52658042701504	3.91441843893035	3.47339772109808	3.82139454069256	3.66176383110007	3.64574516970607	4.26999284100192	0.674556017811435	0.174750975339325	0.469274868847725
Merged-chr10-96408038-3	chr10	96407923	96408123	+	777.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	181816.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	3.50554169507226	3.52882330548901	3.76404703217059	3.89567455047356	3.65112589896281	3.43454956277161	3.49308023124934	3.5600303038689	-0.486938538816718	0.332369507274652	0.643434879668289
Merged-chr16-35844125-4	chr16	35844053	35844253	+	925.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039530, intron 12 of 16)	intron (NM_001039530, intron 12 of 16)	27229.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	4.34809096284691	4.24986081282525	4.25601027535909	4.77010296495482	4.42043848928521	4.2289190216941	4.57064256849663	4.55192335291812	0.00605298262930393	0.988120946698214	0.995370064932717
Merged-chr10-14085997-4	chr10	14085870	14086070	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010437, intron 2 of 8)	intron (NM_010437, intron 2 of 8)	119591.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.12287481125374	4.65370801361139	4.41295999146645	4.50247407000745	4.51919133653527	4.54243637057536	4.30458350894731	4.60969584782297	0.122384677508885	0.749308601129903	0.901249377647905
Merged-chr15-34047145-4	chr15	34047014	34047214	+	993.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35605.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	5.40959816041467	5.61798952916712	5.08682963478958	4.72301939767406	5.64969878490473	5.97243409996521	5.38315635998826	5.04613220620867	0.545210752622087	0.140046817717496	0.416132430781438
Merged-chr6-72549139-4	chr6	72549069	72549269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271395)	promoter-TSS (NM_001271395)	-104.0	NM_001042534	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	6.31734690377309	6.54359164282714	6.40605775065608	6.14150890254327	6.22924776056099	6.61416240951755	6.02639488290971	5.8866515947498	-0.205893215933639	0.429847744779306	0.720635978674715
Merged-chr18-70531485-4	chr18	70531376	70531576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1155.0	NM_001289515	26447.0	Mm.244352	NM_011972	ENSMUSG00000038425	Poli	Rad30b	polymerase (DNA directed), iota	protein-coding	5.59311126009475	5.77254747028485	5.30962390360001	4.9874167814072	6.40752254461475	6.29595999525417	6.26370513925091	5.67255738478365	1.22430357788323	9.06939850467345e-05	0.00187007739329129
Merged-chr14-101640528-8	chr14	101640440	101640640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033132)	promoter-TSS (NM_001033132)	-69.0	NM_001168592	66200.0	Mm.250474	NM_001033132	ENSMUSG00000075486	Commd6	1110059J08Rik|1700063H17Rik	COMM domain containing 6	protein-coding	6.36638411602979	6.56137411972011	6.96788947404539	6.3171475720421	6.10647132368938	6.4300429274421	6.33487292886302	6.64132170076354	-0.271612346099743	0.292110047184609	0.604491831856997
Merged-chr6-86684515-4	chr6	86684420	86684620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025665)	promoter-TSS (NM_025665)	-29.0	NM_025665	66618.0	Mm.182650	NM_025665	ENSMUSG00000001158	Snrnp27	2610209M04Rik|AI449063|AU022368|Ry1	small nuclear ribonucleoprotein 27 (U4/U6.U5)	protein-coding	6.58471666485369	6.61812788104841	6.26692088545923	6.41056826661679	6.21399698558781	6.07112858252612	6.37882731461989	6.14250776004013	-0.401799902673927	0.079020597759665	0.304168883419765
Merged-chr11-99230496-5	chr11	99230429	99230629	+	970.5904539999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_020618, exon 1 of 11)	5' UTR (NM_020618, exon 1 of 11)	488.0	NM_020618	57376.0	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	4.40610518270963	4.51344411166412	4.68884413642963	4.21439064707621	4.42940109206615	4.58228429677507	4.47330598196298	4.88531742599308	0.331712403977469	0.386380380699283	0.687552275421561
Merged-chr2-132103564-4	chr2	132103474	132103674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	41534.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	6.39776046665608	7.1951468357883	6.50425202168373	6.29024776871262	6.71321198231207	6.69761973088763	6.38417446017729	6.29935122097818	-0.156369434816312	0.575719134205666	0.813185666420437
Merged-chr3-101288214-1	chr3	101288114	101288314	+	637.0	f0_balb.idr	promoter-TSS (NM_013486)	promoter-TSS (NM_013486)	-275.0	NM_013486	12481.0	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	3.0460875231052	2.97554497200544	3.04652803943246	3.05454621197273	2.71736033854045	2.631450789061	2.5992381462577	2.74607124629428	-1.75478251500958	0.00910989636872507	0.0737778261041623
Merged-chr13-106836349-4	chr13	106836244	106836444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360897, intron 28 of 30)	intron (NM_001360897, intron 28 of 30)	100614.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	7.17523086561667	6.28520377695432	6.54967156995001	7.19395595552337	6.4432941969468	6.34507145404274	6.65665821268094	6.54498150754468	-0.52466855422758	0.0546299669594618	0.244047928702865
Merged-chr10-95324100-4	chr10	95323997	95324197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330175)	promoter-TSS (NM_001330175)	40.0	NM_001330141	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	6.30936573515151	6.66066288631443	6.21099496638691	6.37542123276012	6.77541369487595	6.34688583834329	6.48809788070175	6.53284748399294	0.22347263662575	0.335750286520712	0.64593679777982
Merged-chr14-25745966-4	chr14	25745817	25746017	+	905.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	22939.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	4.29265786991381	4.45499609262477	4.37772692137083	4.50414413146102	3.80651381354543	4.23138646269831	4.08862771720453	4.33346213243383	-0.742294338623585	0.0731658186070277	0.291121348461603
Merged-chr10-68842484-4	chr10	68842292	68842492	+	883.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	118646.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	3.2119125302057	3.20940864246419	3.32892314912866	3.30543182339199	3.10152660798053	3.19482331656932	3.60879407638869	3.32710387959342	0.19008057968668	0.728776338334638	0.892202937450701
Merged-chr2-156547592-4	chr2	156547438	156547638	+	887.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164818)	promoter-TSS (NM_001164818)	-38.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	3.68542593441913	3.73400294116046	3.5122350923054	3.542015234603	4.07926029423014	3.85828802950881	3.77557685373405	4.05880877954371	1.00709744814625	0.0262331606088106	0.153443186701827
Merged-chr10-93564811-3	chr10	93564719	93564919	+	943.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359749, intron 4 of 13)	intron (NM_001359749, intron 4 of 13)	9938.0	NM_001359749	237465.0	Mm.477086	NM_175488	ENSMUSG00000036168	Ccdc38	4933417K05Rik	coiled-coil domain containing 38	protein-coding	4.88997418641085	5.01786702272649	4.82533679769475	5.17139909321368	4.20534807658144	3.93922160353006	4.32172749173479	4.23680189990297	-1.84183901742648	2.38648853003877e-06	7.66897819772595e-05
Merged-chr6-65150964-3	chr6	65150871	65151071	+	744.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6241.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	3.23059416947181	3.12821258516685	3.49994551656929	3.32025278360799	3.47518310848089	3.14575980719574	3.38595847452383	3.28796721911306	0.124931268871143	0.817872934270733	0.930047250350777
Merged-chr11-98774522-2	chr11	98774422	98774622	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145434, intron 1 of 7)	intron (NM_145434, intron 1 of 7)	855.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	4.24257474137436	4.30128233193181	4.09517505728068	4.28535094949437	4.38789937441521	4.62673461346311	4.17779558234967	4.49339482196328	0.44904829551633	0.246448947781148	0.557685253667598
Merged-chr17-24037468-4	chr17	24037356	24037556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175440)	promoter-TSS (NM_175440)	-787.0	NM_175440	213171.0	Mm.133083	NM_175440	ENSMUSG00000050762	Prss27	CAPH2|Mpn|marapsin	protease, serine 27	protein-coding	5.43897113234226	5.86977445909733	5.21997340326425	5.68809708515178	5.38976316000557	5.17869263578578	5.41273207691764	5.71906053489782	-0.255915375391381	0.40583847340568	0.702456276834042
Merged-chr4-43287553-4	chr4	43287440	43287640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177195, intron 2 of 28)	MTE2b|LTR|ERVL-MaLR	20381.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	5.71997107463102	5.66840748423045	5.34827831525891	5.75017083288675	5.26889679597842	5.17676368439255	5.35217043378628	5.59619532044202	-0.49487214127414	0.0856147406497862	0.318707445413073
Merged-chr1-88214772-2	chr1	88214672	88214872	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201645, intron 1 of 4)	intron (NM_201645, intron 1 of 4)	2813.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	2.54259848232363	2.77200677035284	2.68468177704159	2.81964073373409	2.73134314068403	2.85612436030893	2.91752693887385	2.87086671099216	0.582793605664723	0.362657425200843	0.667846239997174
Merged-chr4-116597601-4	chr4	116597518	116597718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029450)	promoter-TSS (NR_029450)	12.0	NR_029450	654318.0	Mm.255685	NR_029450	ENSMUSG00000085408	C530005A16Rik	D930044c15rik	RIKEN cDNA C530005A16 gene	ncRNA	6.54283400093547	6.56150345644673	6.49404359353193	6.71234417863507	6.81508619874482	6.71980317968621	6.42682989439565	6.36520264246649	0.0212954630211579	0.924091236483737	0.971902425063881
Merged-chr15-61998997-4	chr15	61998914	61999114	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13673.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	5.81754530862741	6.10511574671795	6.31258111262284	6.31571399895603	5.63242409992425	6.30447274997279	5.44727061302847	6.16402078749391	-0.361676889065392	0.229728437584286	0.538813547740569
Merged-chr19-29463819-4	chr19	29463743	29463943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	MTC|LTR|ERVL-MaLR	52924.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	6.57287004673018	6.7477728028147	6.70992645923786	6.9342263997619	6.64442377755121	6.2975683605825	6.33388158746196	6.34295332748298	-0.485225473843579	0.0302438096787794	0.168142164268206
Merged-chr14-47365242-4	chr14	47365135	47365335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8625.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	5.86194337510588	5.78593161296862	6.13733348753328	6.34001228208796	6.40878929795845	5.90946958344158	6.5913011710677	6.53409096175271	0.490580383640786	0.0739083977162103	0.292913465536867
Merged-chr16-4679800-4	chr16	4679691	4679891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030205)	promoter-TSS (NM_030205)	-71.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	8.04806173386669	8.1838931023543	7.8164023527193	8.00730350917264	8.38702616597798	8.22039838646344	8.41966438254699	7.90361960944976	0.294053856879121	0.111325913125832	0.368681299510704
Merged-chr9-120826400-3	chr9	120826264	120826464	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88886.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	6.51502254663918	6.42659099136508	6.19384747154422	6.32683701434202	3.73593489000541	4.22914253836184	3.98858767587276	4.07716689156002	-6.06820009443454	1.17291586181305e-21	4.82583688601104e-19
Merged-chr11-117847636-4	chr11	117847543	117847743	+	884.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	-1594.0	NM_001012273	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	4.11762488624016	3.86733500632864	4.0705863448939	4.06335667294147	4.25409096122993	4.33454192197438	4.18967192635704	4.11574806623088	0.492970378834917	0.220194722950909	0.528002970789744
Merged-chr7-56131744-3	chr7	56131640	56131840	+	840.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360080, intron 24 of 92)	intron (NM_001360080, intron 24 of 92)	81351.0	NM_001360080	15204.0	Mm.20929	NM_010418	ENSMUSG00000030451	Herc2	D15F32S1h|D7H15F32S1|D7H15F37S1|jdf2|mKIAA0393|rjs	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding	4.09612302539913	3.62225180495732	4.2559319231647	4.16449380473991	3.71834640318369	3.76168200013134	3.8482459118607	3.64084332605025	-0.897360759566583	0.0595040687543136	0.257114072109712
Merged-chr10-99393254-4	chr10	99393164	99393364	+	929.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	130033.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	4.94142406649855	5.18906002836493	4.69921423741658	4.7351999616064	4.48175929634665	4.62462904140459	4.47184917352632	4.24355968583603	-0.95339412182865	0.0106114206779223	0.0824135403085091
Merged-chr2-133552165-4	chr2	133552062	133552262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007553)	promoter-TSS (NM_007553)	3.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	5.91232115759607	5.85065858110172	6.07148984893968	5.61584755954971	5.5421015424756	5.6391848379799	5.43446425019505	5.33153369358339	-0.613063644753154	0.0270030001710388	0.156314781162522
Merged-chr7-136321541-4	chr7	136321440	136321640	+	921.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27875.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	4.32828055951506	4.25439232247089	5.05568798630402	5.18867606763929	5.02851844729527	4.66295718839441	5.25369586167723	4.81572902567605	0.345968465328401	0.424837897495494	0.716525761339995
Merged-chr10-93487573-2	chr10	93487473	93487673	+	865.583374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-1195.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	4.64940508666273	4.16030490343454	4.13234439118982	4.45256252670985	3.32800884364231	3.29930991657337	3.4012921871987	3.48157987637059	-3.30075860439629	1.84899395733656e-08	9.33400999214605e-07
Merged-chr11-87436443-3	chr11	87436320	87436520	+	812.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	8829.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	2.92516429733721	2.71581090457051	2.78826324442211	2.76396298887978	3.25753517784864	3.10014192148397	3.25322804952773	3.16174705311775	1.69244076180492	0.00366643945589371	0.0373833969389856
Merged-chr7-80402202-4	chr7	80402087	80402287	+	977.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081454, intron 1 of 15)	CpG	625.0	NM_011046	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	4.60187691797476	4.59769906108916	4.91766214573366	4.65303524232095	4.95841633820809	5.22107586390573	4.99363216739819	5.04670134592029	0.724565477215457	0.0258976473116896	0.152068028213064
Merged-chr8-120490934-3	chr8	120490833	120491033	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	2067.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	3.92273258475761	3.87887676818527	3.6728512128954	3.57003950957912	4.18542709934289	3.54677764754698	3.6028026331027	3.72490155847166	0.122902470096783	0.808003077357725	0.92593795364266
Merged-chr7-35066840-4	chr7	35066737	35066937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-10271.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	7.44989106093931	7.04716398800342	6.33555864015629	6.69992478759436	7.13645696969476	6.98344398636958	7.28658107130953	6.8853011802302	0.191220836299152	0.475498832844214	0.75230681773363
Merged-chr17-28308944-4	chr17	28308848	28309048	+	779.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4582.0	NR_028297	72775.0	Mm.201859	NM_028348	ENSMUSG00000007570	Fance	2810451D06Rik|AI415634|AW209126	Fanconi anemia, complementation group E	protein-coding	4.26918220029994	4.04867197930091	3.91844501563987	3.86010230514702	3.95735709125655	3.93362639511818	3.90223685485556	3.86464629164039	-0.293801156811965	0.501627814671768	0.76929666732428
Merged-chr13-24800750-4	chr13	24800624	24800824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024473)	promoter-TSS (NM_024473)	-933.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	7.60422105058174	7.86987058333028	7.38112171936411	7.64799280709594	7.80976089239668	8.0034468480352	8.0973408226229	7.75150319943663	0.364392796101803	0.0520739206486576	0.237572623216372
Merged-chr6-92989242-2	chr6	92989222	92989422	+	662.75	f0_balb.idr|f1_balb.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	48740.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	3.04228469601442	2.77121458351461	2.8132088805905	3.30627564726954	2.33928842928501	2.47694043274895	2.45094633656209	2.98731309467848	-1.96738495791479	0.212058702111416	0.516872762448566
Merged-chr9-66624528-1	chr9	66624428	66624628	+	578.0	f0_balb.idr	Intergenic	Intergenic	-31413.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	3.31071763665861	3.4584004801294	3.37325063187366	3.39536387337846	3.66175698147684	3.81315431780583	3.47584279465126	3.54183278137948	0.791276313215751	0.107751573169627	0.36205500709194
Merged-chr2-28593035-4	chr2	28592944	28593144	+	907.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9765.0	NM_001290484	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	4.38310068844952	4.96077354142604	4.72141540015996	4.38021251267978	4.67363544184874	4.46530333751387	5.02109611543101	4.56062328517673	0.151395139887361	0.69812367398731	0.878180583445566
Merged-chr10-30772459-1	chr10	30772359	30772559	+	608.0	f0_balb.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	30867.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	2.87857927588221	2.97776834208907	2.93792498989545	3.18568717949543	2.75916433791674	2.55624651185452	2.80786316835052	2.75098843559364	-1.34539801635724	0.0441545073506165	0.214340426836905
Merged-chr1-180196047-4	chr1	180195916	180196116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359268)	promoter-TSS (NM_001359268)	4.0	NM_023341	67426.0	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	8.48985431807664	8.51779620296459	8.56859495189028	8.62325801537222	8.58025177216246	8.58099082774634	8.77831098384786	8.40874350456833	0.0510098099908453	0.742070325422757	0.898417179766546
Merged-chr13-9642108-1	chr13	9642008	9642208	+	846.0	f0_balb.idr	intron (NM_001081426, intron 31 of 36)	intron (NM_001081426, intron 31 of 36)	121702.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	3.44461016619856	3.53982841991907	3.77553417710249	3.88638552163017	3.73124152056521	3.73738766440474	3.710691870811	3.67241461394147	0.0773785820151161	0.873133493185492	0.952434161906071
Merged-chr5-100582629-4	chr5	100582533	100582733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10428.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	5.66641779791306	5.30681011365269	5.36632365426406	5.80981632483067	5.71233748693375	5.48004964069006	5.2444077779227	5.61377594274584	-0.0641596011578096	0.830799445238344	0.935077092131695
Merged-chr11-89098288-4	chr11	89098192	89098392	+	940.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	24451.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	4.19685796893143	4.54278419292584	4.47963967501125	4.13831951154537	5.59407797970411	5.62696770269433	5.4255315232671	5.49811066704434	2.38178418844721	1.69917661619544e-13	2.11443518119188e-11
Merged-chr5-25081744-4	chr5	25081652	25081852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 1 of 15)	intron (NM_145401, intron 1 of 15)	18890.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	7.05089342805501	6.98102579628661	6.83931101947375	7.2957900954011	6.62589317313998	6.28281373595748	6.66069085260684	6.72030585566905	-0.674064050358989	0.00225197044260047	0.0256304771560376
Merged-chr16-24902589-4	chr16	24902492	24902692	+	892.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-157047.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	4.11055139503049	4.58209000278147	4.58133200856291	5.15286068566926	4.07650819460756	3.74672621802956	4.19156861650844	3.75940070278111	-1.74525951559357	0.000413538306145112	0.00661020505122456
Merged-chr16-59559203-4	chr16	59559113	59559313	+	924.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3461.0	NM_174848	224273.0	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	4.48101108977299	4.03512916316931	4.34755622026666	4.16601318632659	4.80758882901533	4.8848476069544	4.46101514941628	4.84512211982754	1.1282898573565	0.00260389762084508	0.0286048864573894
Merged-chr14-7964665-4	chr14	7964569	7964769	+	962.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007870)	TTS (NM_007870)	29513.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	4.74069089421428	4.98015113081387	4.48199539202913	4.66173757121855	4.68118509826193	5.02677108052997	5.14387448364492	4.8507626937808	0.411217071653034	0.240808560728467	0.55135462378061
Merged-chr8-35707095-3	chr8	35706991	35707191	+	757.377747	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118071.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	3.23875975700603	3.20477660587743	3.23912190823694	2.9727167313944	4.19354640607576	4.09983740868566	4.07438212466054	3.92481078540793	3.07805342783096	6.64855456216629e-10	4.42691735435393e-08
Merged-chr2-164861645-2	chr2	164861555	164861755	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3947.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	3.00397408927913	2.85380554405645	3.00433939795782	3.01953124566425	3.13100079314986	3.04974684768701	2.99377548169613	3.06190891727333	0.364823820727634	0.523094949765807	0.782359002463945
Merged-chr10-37280082-4	chr10	37279971	37280171	+	855.8875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141145.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	4.34944576570737	4.01275964205527	4.0812775825608	4.41619258893897	4.22090744895764	4.20479483549775	4.20429014852767	4.26409177816429	-0.0396424639662792	0.922255768130942	0.971198415785778
Merged-chr5-129864614-3	chr5	129864513	129864713	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026445)	TTS (NM_026445)	14475.0	NR_145486	18682.0	Mm.3159	NM_011079	ENSMUSG00000025537	Phkg1	Phkg	phosphorylase kinase gamma 1	protein-coding	4.77133830642229	4.70443470580823	4.80267760676615	4.77568383451474	3.70883988447088	3.72475416263317	3.7260245695979	3.80331283624111	-2.80167813707307	1.3479474523488e-09	8.46080702916539e-08
Merged-chr10-61134230-4	chr10	61134111	61134311	+	995.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 2 of 14)	RLTR17|LTR|ERVK	13473.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	4.93945617558641	4.78508409006235	4.74818621674067	4.85508277098683	5.13201705335084	5.14876688774524	5.22822883386184	5.03963531501847	0.590951261928354	0.054624409790253	0.244047928702865
Merged-chr2-91082300-5	chr2	91082174	91082374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11959.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	5.1918374797564	5.61280928828329	5.66275712485127	5.3141637123818	5.32242625903468	5.26608094953844	5.29371015257147	5.18917409194429	-0.325353854687257	0.271606915599354	0.583248237956304
Merged-chr6-116181014-3	chr6	116180918	116181118	+	718.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 1 of 5)	RLTR34D_MM|LTR|ERVK	12356.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	3.34095717300763	3.37004478635182	3.34138221044974	3.7745523076702	3.39024160159623	3.39420194830783	3.32909006183348	3.08770361365462	-0.619679459613101	0.268704522165043	0.580332587130134
Merged-chr11-70074865-4	chr11	70074749	70074949	+	918.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17795.0	NM_007493	11890.0	Mm.1357	NM_007493	ENSMUSG00000040963	Asgr2	ASGPR2|Asgr|Asgr-2|HL-2	asialoglycoprotein receptor 2	protein-coding	3.70365537841865	3.78158178514073	3.40584418809391	3.60285648502999	4.16753579895594	4.06993982506185	3.52044626507343	3.59079488881181	0.713099681732545	0.162004625967971	0.451094443992264
Merged-chr1-152697626-3	chr1	152697523	152697723	+	909.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	ORR1D1|LTR|ERVL-MaLR	-52928.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	3.55325281393047	3.78039491749972	3.81359414622577	3.69690800297318	3.46160257244776	3.61045090383717	3.70052084452679	3.76343999006122	-0.252820356178988	0.595099001145897	0.823775803239281
Merged-chr6-91703496-4	chr6	91703387	91703587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	MIRb|SINE|MIR	19420.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	5.52818049013327	6.16789164644365	5.87571320911683	5.65702906386998	6.37659612212574	6.00419651118047	5.86872849243677	5.79953554875283	0.344419291220578	0.231475385549109	0.541040114030533
Merged-chr1-74237080-4	chr1	74237006	74237206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	CpG	589.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	6.0195189366986	6.16306423158496	6.19560515427115	6.30584342693496	6.48927944038117	6.50712156648609	6.64717158529903	6.54500306581654	0.532499614137731	0.0151973918491912	0.105855284708247
Merged-chr17-51220756-4	chr17	51220670	51220870	+	981.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41418.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	4.11014016065147	3.55939591008808	3.68089032345758	3.96643602126376	4.32614212697357	4.45035493942957	4.13691519273668	4.108205888492	1.06259482247422	0.0190159388045028	0.123657221236359
Merged-chr11-46265093-2	chr11	46264993	46265193	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 13 of 30)	MTC|LTR|ERVL-MaLR	29536.0	NM_177075	320116.0	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	4.32834499205745	4.81095384380189	4.59017395552129	4.27035293403739	4.50678357463015	4.55266667342072	4.56872415490041	4.76999349668101	0.204267811634118	0.590498926915239	0.821000549250899
Merged-chr4-47080566-5	chr4	47080486	47080686	+	894.8666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11367.0	NM_172693	230145.0	Mm.132246	NM_172693	ENSMUSG00000039774	Galnt12	9130206E10|A630062B03Rik	polypeptide N-acetylgalactosaminyltransferase 12	protein-coding	4.02055393448675	4.56222541507705	4.07260391591721	4.40043665143199	3.90416853779877	4.38756198232101	4.1045702134265	4.21328184585306	-0.34129294290099	0.432340218412194	0.722400629272084
Merged-chr14-55783314-9	chr14	55783152	55783352	+	884.815735	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080435, intron 2 of 25)	intron (NM_080435, intron 2 of 25)	820.0	NM_080435	104110.0	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	3.72836383023827	3.29062197975259	3.40411930589619	3.19857828627222	3.7425333212288	3.63928659634784	3.61417030065848	3.77351501584422	0.938259625706988	0.0639878987684309	0.268748226610458
Merged-chr14-66182773-4	chr14	66182668	66182868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 5 of 30)	intron (NM_001162366, intron 5 of 30)	31056.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	5.64983779578286	6.33758803173222	5.62311125103266	6.01696879041138	5.9296576648957	5.34248720451443	5.82334739646748	6.1021330552671	-0.184836692933048	0.550218546837784	0.798490514293755
Merged-chr2-168574092-3	chr2	168574005	168574205	+	830.077759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	16260.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	3.92451079396188	4.15812086881944	3.97142828247349	4.14189092661948	3.4917010939422	3.72367719961995	3.59255620725	3.66259074523408	-1.34872708108245	0.00392494756259765	0.0394763095320246
Merged-chr14-87190879-4	chr14	87190789	87190989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49665.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	6.09052865414325	5.59551776594169	6.11375970085413	6.34164461544549	6.76713545308802	6.6506319181527	6.90309986512012	6.5025223315175	0.94023948003383	0.000287111140003302	0.00489609100007069
Merged-chr17-34980764-4	chr17	34980686	34980886	+	889.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1068.0	NM_001110101	27756.0	Mm.165735	NM_030597	ENSMUSG00000007050	Lsm2	D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	4.0737148407987	4.45838140048992	4.42688624103657	3.92505528129754	4.89056690789712	4.46702027345717	5.1227384860336	4.50956953483986	1.23353824316478	0.00268146086678169	0.0292801949784915
Merged-chr14-31385092-4	chr14	31384967	31385167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	32610.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	7.01926547331495	7.01339443217121	7.31356662715883	7.18321020875262	7.11071873593175	6.88338720754507	7.41894246435933	7.30846887520513	0.0776880288394599	0.705315209206059	0.881662591339926
Merged-chr4-10972808-1	chr4	10972708	10972908	+	585.0	f0_balb.idr	Intergenic	Intergenic	34811.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	3.49112291245521	3.26403337219322	3.64884932521082	3.32774710136134	3.5879704127167	3.36058031238316	3.63317229427944	3.74144785289122	0.516565060266093	0.30870409346549	0.621064122916341
Merged-chr11-90240863-1	chr11	90240763	90240963	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-8613.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	5.88061385616949	6.19773071380668	6.03068123296049	5.56814065455646	5.80850254706326	6.03379024190526	5.78227893869227	5.17280989837341	-0.315908622532856	0.30990069869219	0.622047371258887
Merged-chr7-45023898-1	chr7	45023798	45023998	+	714.666687	f0_c57.idr	Intergenic	B2_Mm1t|SINE|B2	4301.0	NM_001360133	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	2.4415542344908	2.46191840395536	2.44175122120653	2.12062392830014	3.39582506759963	3.29878033041838	3.16207899009664	2.95108892895346	6.11357740892337	3.59848328988527e-11	2.95428422249993e-09
Merged-chr10-83646542-4	chr10	83646436	83646636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145220, intron 1 of 20)	Lx8|LINE|L1	2128.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	6.01656679207648	5.51081205398549	6.28625057302057	6.63088141953076	5.85883819750364	5.7400730643162	5.70176930984639	6.15469611558085	-0.48769837256679	0.125601753697487	0.393529678071725
Merged-chr16-20325517-3	chr16	20325435	20325635	+	982.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183158)	promoter-TSS (NM_183158)	-131.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	4.40384576830627	3.91844131311981	4.33325402037026	4.27591874371747	3.54797039685122	3.52506352947113	3.98078267497399	3.54477422210711	-1.67582778881956	0.000704000922363303	0.0101725703720864
Merged-chr2-170155644-4	chr2	170155536	170155736	+	999.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12961.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	4.93261786562815	5.15129838244102	4.56216171179066	4.55030485182393	5.28970135134047	5.20981255508252	5.01209994473941	5.06599567109478	0.66193919988546	0.0544051671714354	0.243534247246073
Merged-chr2-144720629-3	chr2	144720520	144720720	+	988.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	-103046.0	NM_025490	66328.0	Mm.45377	NM_025490	ENSMUSG00000027431	Scp2d1	1700010M22Rik	SCP2 sterol-binding domain containing 1	protein-coding	4.73117085393875	4.70483170290549	5.36027656919625	5.29931498365265	3.76349421123625	4.26528027074341	4.32759348956234	4.29388966976019	-2.03582792118066	2.70601648201985e-06	8.60641408282802e-05
Merged-chr7-101070566-4	chr7	101070460	101070660	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38215.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	4.70341682923373	4.95619531976039	4.78220145460387	4.86707091819259	4.76113690137582	4.66518967604711	4.72163901054346	5.13837412240972	-0.00264609453968037	0.993794278897856	0.997702270136287
Merged-chr2-93217258-4	chr2	93217179	93217379	+	933.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183180, intron 5 of 9)	intron (NM_183180, intron 5 of 9)	29731.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	4.44476684382803	4.99808337861859	4.82062875283394	4.25095954476785	5.06942617217593	5.02891270750091	4.96494534877323	4.49002492391976	0.530428424515952	0.179309869643692	0.475558645945455
Merged-chr10-98725335-4	chr10	98725233	98725433	+	958.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-189309.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	5.13672660903653	4.95600473715753	4.90961413121643	5.08131565111619	4.66874015352517	5.08272339062693	4.77531749165072	4.79463758323325	-0.397300757299999	0.224913910482081	0.53334646858495
Merged-chr17-87459452-4	chr17	87459346	87459546	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12511.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	4.89465158251252	4.54761719571231	4.67989429617642	5.09462832429394	4.50036766557403	4.64495340107091	4.83843393836977	4.46476385023336	-0.466518102834048	0.207354098124173	0.511353145509943
Merged-chr1-85809460-4	chr1	85809352	85809552	+	811.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355046, intron 2 of 9)	intron (NM_001355046, intron 2 of 9)	15435.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	4.78955149540663	4.95937948406522	4.82974839815066	5.2588761409693	5.17502352713417	4.92670918295803	4.72783326632662	5.22318418342708	0.0785712576187809	0.820598050968435	0.93125665518538
Merged-chr8-109799474-4	chr8	109799364	109799564	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301211, intron 1 of 22)	intron (NM_001301211, intron 1 of 22)	20881.0	NM_001301211	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	4.49920097350786	4.77718264895072	4.66626516574888	4.92668385400426	4.69237824927848	4.75928885829121	4.56491921070102	4.582851004933	-0.194751135891919	0.581494154124194	0.816358107264275
Merged-chr2-162930012-3	chr2	162929873	162930073	+	958.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1535.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	3.7133158788488	3.80392075181305	3.66377219827866	4.16059064929263	3.41285645306989	3.28683850826062	3.3679163310982	3.37773751751917	-1.66804783365997	0.0017954460079882	0.0214967285790735
Merged-chr2-124605528-4	chr2	124605423	124605623	+	726.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-4773.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.20116847611213	3.86084357680609	3.80682626735854	3.73682166772847	4.16664710324345	4.14365026391623	4.22390550607296	4.24089013063551	0.779666852893854	0.0651232902164732	0.271536086844931
Merged-chr2-165453506-4	chr2	165453414	165453614	+	980.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054055, intron 1 of 12)	intron (NM_054055, intron 1 of 12)	19683.0	NM_054055	114644.0	Mm.250738	NM_054055	ENSMUSG00000018459	Slc13a3	NaDC-3|NaDC3|SDCT2	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	protein-coding	5.59192312931111	4.80334284170311	5.13373949098301	5.4027736014597	5.66609389383063	5.04831431058114	5.56436535931398	5.22983874339907	0.251171563734318	0.466118414198253	0.74629927630325
Merged-chr2-151009311-4	chr2	151009210	151009410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207204)	promoter-TSS (NM_207204)	88.0	NM_207204	78177.0	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding	5.06945989809178	5.15166985755641	5.57882475358556	4.89557654192214	4.85806634650303	5.49440477776438	5.14504592955435	5.19873053367128	-0.00363908310513409	0.991588414444309	0.996772106195311
Merged-chr15-76660208-4	chr15	76660112	76660312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358912)	promoter-TSS (NM_001358912)	-4.0	NM_019396	54151.0	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	7.96603677528683	8.28585533492875	7.65266747371898	7.84150748407076	8.01870178890637	8.17246927319136	8.24593892025235	7.83784879117997	0.153447519003888	0.438944809954455	0.726833216111016
Merged-chr1-54798636-4	chr1	54798522	54798722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 2 of 27)	intron (NM_001081433, intron 2 of 27)	127765.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	6.3765216459902	6.33755339722143	6.413199337536	6.64273392193653	6.50680899515501	6.3605511495395	6.43168117996082	6.46009310193379	-0.0273175767568619	0.900708617857062	0.963199752264056
Merged-chr12-33040971-4	chr12	33040878	33041078	+	974.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024478, intron 15 of 19)	intron (NM_001024478, intron 15 of 19)	51897.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	5.24778157218648	5.481204073656	4.97126978190943	5.41188690958893	5.80633910164241	5.29381107830564	5.02215303856393	4.92878655347367	0.0513217681972549	0.88547832802168	0.957020588391011
Merged-chr13-104108701-4	chr13	104108556	104108756	+	907.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029447, intron 1 of 12)	intron (NM_029447, intron 1 of 12)	958.0	NM_029447	75805.0	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	4.80353709012085	4.72007129223222	5.43673699530751	5.37920252063599	4.49183870252123	4.54949083377129	4.34597821298722	4.64255423860839	-1.29439133426466	0.000762487816106418	0.0108351208350247
Merged-chr1-107489831-4	chr1	107489742	107489942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-21581.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	5.71710302254107	5.45030922060038	5.8896847495604	6.35452770446214	6.21073683530371	5.94586528109851	5.83663843976247	5.68757164575364	0.0392207172736734	0.899908462540086	0.962872767772365
Merged-chr14-20846339-4	chr14	20846219	20846419	+	880.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9657.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	3.82132858741095	4.27571760478777	4.21302306751204	4.02296677980598	3.96435145109813	4.05343991802111	4.06221465814479	4.12327788625215	-0.116505043173049	0.783495482852952	0.915649203519514
Merged-chr12-98746319-4	chr12	98746228	98746428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160107)	promoter-TSS (NM_001160107)	-640.0	NM_001160107	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	5.85343950447379	5.84833493262362	5.68305985334373	5.73805756278489	5.71340768939724	5.69301005870544	6.01429590612694	5.85030485264822	0.0669442239460381	0.791029750346758	0.918930451102165
Merged-chr6-116265790-4	chr6	116265687	116265887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290339)	promoter-TSS (NM_001290339)	-745.0	NM_001290339	67492.0	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	5.81245197841379	5.39035330912363	5.2336717555293	5.25624687789871	5.50576962997796	5.44323276366506	5.47609164703652	5.44470844665727	0.0658207768194121	0.823039879427668	0.932185203682946
Merged-chr7-35118421-7	chr7	35118329	35118529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287523)	promoter-TSS (NM_001287523)	-864.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	5.22355908973753	4.95649423112133	4.93818996056435	5.10490153826955	4.64981020876401	4.79589576831122	4.98333252015512	5.19207356232274	-0.29355989381359	0.378832133590558	0.681370295695184
Merged-chr9-116137009-4	chr9	116136912	116137112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	38351.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	6.82899301461618	6.53259091275767	6.63592286599443	6.58525521860971	6.21403455465381	6.16245665384126	6.54076138727233	6.70404648360782	-0.328444953758644	0.159925569816268	0.447715346594711
Merged-chr13-43779182-4	chr13	43779058	43779258	+	972.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5954.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	5.64264724870929	5.77307910103601	5.53997934253345	5.51480788312971	5.69133157254666	5.02711288166796	5.75505066525993	5.26665419031012	-0.233558613334627	0.447283878571846	0.732855493043594
Merged-chr11-82781335-6	chr11	82781225	82781425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126067)	promoter-TSS (NR_126067)	216.0	NM_010716	16882.0	Mm.277136	NM_010716	ENSMUSG00000020697	Lig3	D11Wsu78e	ligase III, DNA, ATP-dependent	protein-coding	5.90551684082955	6.34347979136386	6.43871227497154	5.86727081381599	6.16373633401545	6.32674410868421	6.05772438479294	6.31635257165314	0.101596079791138	0.695036853469575	0.876293541751291
Merged-chr11-115161861-5	chr11	115161834	115162034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163753, exon 9 of 9)	3' UTR (NM_001163753, exon 9 of 9)	-1407.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	4.77302926694846	5.23742282822355	5.63703265518791	5.14869928130497	5.21470506730171	5.26082635576025	5.3089192133968	5.04657030095628	-0.0353773581873902	0.915035750981377	0.968396474535973
Merged-chr9-41191291-4	chr9	41191188	41191388	+	886.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14867.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	3.78766239405695	4.27292761655972	3.90334491990857	3.80926555796488	4.2033435800673	4.36970137065476	4.13554287119624	4.39884231707704	0.832362057331083	0.0507578503941891	0.233569332483458
Merged-chr9-99062730-4	chr9	99062634	99062834	+	865.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 14 of 23)	intron (NM_029094, intron 14 of 23)	-27044.0	NM_001080776	382097.0	Mm.293727	NM_001080776	ENSMUSG00000044860	Gm1123	AV052824|CLSP	predicted gene 1123	protein-coding	3.55215701054365	3.7965713377187	4.13706933689701	3.70123867025464	4.17073049426313	4.34720150799817	4.07489767648121	3.79374439183614	0.822567588339052	0.0767983118170164	0.29957252758993
Merged-chr9-94513002-4	chr9	94512887	94513087	+	960.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	25094.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	5.17319548346021	5.13586365372542	4.86793524320859	3.90195334269575	4.62740363882304	4.8585597860593	4.77322563432213	4.36397636228733	-0.397842752393676	0.38909293424186	0.689374802932542
Merged-chr8-125054697-4	chr8	125054559	125054759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 1 of 12)	CpG	464.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	6.25097112668827	6.69186665630885	6.02994178522948	6.38760855654032	6.90794152441617	6.3683312805242	7.0813444234773	6.48828391940117	0.553541349529912	0.0371906688898178	0.192345761897203
Merged-chr3-105824405-4	chr3	105824279	105824479	+	818.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8812.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	3.7789477007166	3.68054952258966	3.92266127740677	3.77005740309993	3.90149162650233	3.67592971197898	3.60488463262812	3.77731247884795	-0.104976974659745	0.819447192331588	0.930870772003545
Merged-chr13-56703001-4	chr13	56702948	56703148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164042)	promoter-TSS (NM_001164042)	-4.0	NM_001164041	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	6.63320419062794	7.03140068009738	6.43018155779161	6.40704133806974	6.78152820426617	6.71366331134041	6.96432319941773	6.73500477393248	0.223469994170133	0.339514314674488	0.648774648981312
Merged-chr5-103819853-4	chr5	103819756	103819956	+	887.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133919, intron 7 of 19)	intron (NM_133919, intron 7 of 19)	65283.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	4.07736460332532	4.00848541081492	4.22026778645558	4.25708808333796	4.54508877997264	4.15041350242866	4.2453522080039	4.21767392813633	0.389385744896687	0.337371140183538	0.647065507846796
Merged-chr19-17165164-3	chr19	17165040	17165240	+	708.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	174365.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	2.87633839629961	2.77698376320569	2.87671524915197	2.82973653127836	2.95397041979517	2.57470140970038	2.80757910575099	2.54892712922673	-0.462394160416852	0.491223856430665	0.762874410945788
Merged-chr10-75710407-4	chr10	75710311	75710511	+	930.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 26 of 36)	intron (NM_172549, intron 26 of 36)	53946.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	4.57415075939659	4.38112983468714	4.61771919738579	4.98559794806962	4.60234777036622	4.36022827512779	5.33377434600454	5.09941069232962	0.476204272019224	0.260159984781492	0.571924258091621
Merged-chr6-108832427-4	chr6	108832320	108832520	+	984.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138677, intron 1 of 11)	intron (NM_138677, intron 1 of 11)	3779.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	5.03812417896086	4.72051618414685	4.83568471285367	5.05778503708233	4.8825480133469	4.72742844476061	5.07469820378705	4.49929563427252	-0.222931006944956	0.523485248028081	0.782507755382099
Merged-chr2-61137041-3	chr2	61136934	61137134	+	845.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-161883.0	NR_045335	100038493.0	Mm.388076	NR_045335	ENSMUSG00000075325	Gm13582	-	predicted gene 13582	ncRNA	3.48132387439796	3.25665269640314	3.63137211702614	3.66462012447158	3.38889902388556	3.2278454444622	3.5190014352137	3.18436621678282	-0.635720522899098	0.241249311912793	0.551836536802638
Merged-chr17-24285898-3	chr17	24285790	24285990	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001031621, intron 21 of 29)	intron (NM_001031621, intron 21 of 29)	-34481.0	NM_007634	12449.0	Mm.77695	NM_007634	ENSMUSG00000072082	Ccnf	CycF|Fbxo1	cyclin F	protein-coding	5.00386377035349	5.36610450941577	5.24339531691617	4.8602701241122	3.80832668187418	3.85849035680465	3.98084194349637	3.7242367695464	-3.27668456453702	6.60262448586003e-12	6.13535519946516e-10
Merged-chr10-80317214-4	chr10	80317131	80317331	+	926.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011789, exon 14 of 14)	3' UTR (NM_011789, exon 14 of 14)	3317.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	4.1471807380806	4.16361839084113	4.1995408171324	4.07052350122203	4.59378437850027	4.83407897514069	4.67634358669456	4.66133893954767	1.27309697477166	0.00046274126290652	0.00724235735370012
Merged-chr7-44373922-4	chr7	44373814	44374014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027049, intron 2 of 5)	intron (NM_027049, intron 2 of 5)	1116.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	6.55733109901314	6.63830433663658	6.7342819841767	7.16419864728362	6.88265887730632	6.6298345743682	7.10280849540284	6.98488581201595	0.136860682882809	0.564543913580701	0.806797378143786
Merged-chr12-110458883-4	chr12	110458700	110458900	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135001, intron 2 of 13)	L1MA5A|LINE|L1	11621.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	4.95683101272025	4.60487866234	5.19823662362821	4.79668316622218	4.52965931101677	4.66203786922691	4.6794220991417	5.13871076957514	-0.266496658562578	0.472454629465727	0.750627901424053
Merged-chr14-76964210-4	chr14	76964093	76964293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72424.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	6.14319653976196	6.40922594693528	6.81851561380657	6.98154814969083	5.83808987105988	6.14185145789085	6.30798614873918	6.02915179679788	-0.834272852022748	0.00252142011542734	0.0279430113857989
Merged-chr2-170218600-4	chr2	170218470	170218670	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75895.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	4.66576644390058	4.63202714119732	4.81370569154065	4.5521305043706	4.78186795870345	4.83846648366793	4.60559586449662	4.58309178266872	0.1085906925041	0.752234903397037	0.902363969099289
Merged-chr13-113600855-4	chr13	113600761	113600961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	17703.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	7.22305019858937	7.81760590025047	7.43478977299423	7.08796716359523	7.59490445576561	7.59252925323333	7.32844821891353	7.61804966987176	0.163570808633815	0.455319801286064	0.738890340972614
Merged-chr6-85117968-3	chr6	85117837	85118037	+	836.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034902, intron 2 of 2)	intron (NM_001034902, intron 2 of 2)	8157.0	NM_001034902	545861.0	Mm.321419	NM_001034902	ENSMUSG00000072952	Gm5878	EG545861	predicted gene 5878	protein-coding	3.15958839836731	3.00047213375405	3.21670130039231	3.22920230086766	2.99995663890879	3.1475477476067	3.25767500220763	3.09915492252013	-0.128338714530069	0.819172515893376	0.930746026231085
Merged-chr16-10945949-4	chr16	10945851	10946051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31154.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	5.66059324450424	5.64185776412378	5.73802045260833	5.82627106745828	5.64610891568352	5.61040943741536	6.05061128535713	5.80596623852123	0.0986800603519677	0.708081201128763	0.882710273980338
Merged-chr12-85524614-4	chr12	85524523	85524723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50733.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	7.24089108694583	7.55278647200379	7.41625971173824	7.12754765332029	7.44685326581521	7.48337331087729	7.26996891868628	7.00884117112936	-0.0271284517733172	0.895309760502908	0.960823579379062
Merged-chr9-106888856-4	chr9	106888771	106888971	+	818.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029103, exon 4 of 4)	3' UTR (NM_029103, exon 4 of 4)	-1871.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	3.866981284917	3.80040716303178	3.71216362893394	3.61591238003834	3.76219544460243	4.08241893457874	3.8511415252458	3.86525442040723	0.43265983151328	0.334843388673704	0.645239354575747
Merged-chr16-85305206-3	chr16	85305093	85305293	+	851.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-131486.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	3.20587665064796	2.90783621522167	3.20624789041245	3.20456381976822	3.50886896344138	3.69583332112423	4.14187950056256	3.85846650294424	2.24331516776478	9.78264338164652e-05	0.00199420381453118
Merged-chr4-139232246-3	chr4	139232143	139232343	+	879.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	38132.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	3.06800628375267	3.24815057341397	2.72580520231643	3.36341637844582	3.07081393333926	3.11454453900339	3.05763504392211	3.12576621945837	-0.159769669033346	0.8005023298389	0.923040237917604
Merged-chr2-155074397-5	chr2	155074276	155074476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016661, exon 1 of 10)	exon (NM_016661, exon 1 of 10)	121.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	6.59261933921006	6.72485495855453	6.98747229717053	6.12820711967792	6.57064222560389	6.48719344904903	6.70956172040298	6.87314127039895	0.0535290852708408	0.83573040728481	0.937516254002898
Merged-chr1-171018886-4	chr1	171018784	171018984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144559)	promoter-TSS (NM_144559)	-42.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	5.56603113194382	5.69470301760471	5.86958093210052	5.81336969034935	5.73040419532209	5.65564249063578	5.90489272758079	6.01268529097616	0.138589679338882	0.592176981918324	0.821984933324838
Merged-chr7-73584230-4	chr7	73584117	73584317	+	886.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25822.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	4.01989118645067	3.99457498653488	3.80192384266763	4.14951238908899	4.40701521683699	4.19389140320281	4.23106776434593	4.20496594944594	0.650291116542564	0.116714663943459	0.378049286226687
Merged-chr11-23256935-2	chr11	23256835	23257035	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035226, intron 2 of 25)	intron (NM_001035226, intron 2 of 25)	894.0	NM_134014	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	4.08397359876259	4.64127699268506	4.89457972209313	4.44870184559359	4.75181679031499	4.86056520737897	4.378723706118	4.64832148378816	0.275578816277139	0.491053933157897	0.762710365248565
Merged-chr14-63050980-4	chr14	63050873	63051073	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3982.0	NM_001034910	619548.0	Mm.387101	NM_001034910	ENSMUSG00000054763	Defb42	BD-42|Defb44|mBD-42	defensin beta 42	protein-coding	5.11538264551921	5.92107859616772	5.7054677637747	5.29046933436213	5.15751076609031	5.43602259100648	5.69948478142485	5.6776176201606	-0.0663388369285473	0.841618959857717	0.939882709487764
Merged-chr17-32164073-4	chr17	32163974	32164174	+	955.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008716, intron 2 of 32)	intron (NM_008716, intron 2 of 32)	2778.0	NM_008716	18131.0	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	4.52955693444211	4.9768984814038	4.57729358428667	4.77078116104386	4.82077260185065	4.88761143775532	5.37504988586837	5.37455406713047	0.792756444968018	0.0272524581947607	0.157283389905517
Merged-chr14-55015303-4	chr14	55015204	55015404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026890)	promoter-TSS (NM_026890)	-150.0	NM_026890	68966.0	Mm.21214	NM_026890	ENSMUSG00000022204	Ngdn	1500001L15Rik|Ngd|neuroguidin	neuroguidin, EIF4E binding protein	protein-coding	8.29371670697797	8.53149109642908	8.07966105839928	7.99346448489894	8.42864528297661	8.70451985256032	8.42961076404234	8.31756277162814	0.302229724036813	0.106553551639203	0.359909611926484
Merged-chr15-79328287-4	chr15	79328205	79328405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199024)	promoter-TSS (NM_001199024)	66.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	8.74011396698765	8.96930653389691	8.45312352010898	8.47020252223877	8.77266025078882	8.81101434549357	8.67669382900802	8.5384306005489	0.0380112739353955	0.831362807359046	0.935330792751506
Merged-chr11-6520938-4	chr11	6520809	6521009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178440)	promoter-TSS (NM_178440)	49.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	6.08339625078047	5.79524316625387	5.98513976404122	5.84158723427432	5.41585683208005	5.53580174853214	5.95446428494045	5.77953803506888	-0.398318744155735	0.142830917558566	0.420766570685422
Merged-chr17-27190024-2	chr17	27189948	27190148	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_146075, exon 9 of 9)	3' UTR (NM_146075, exon 9 of 9)	14390.0	NM_146075	224640.0	Mm.29689	NM_146075	ENSMUSG00000044857	Lemd2	BC026588|Lem2|NET25	LEM domain containing 2	protein-coding	3.18056444791534	3.07558466577132	3.35453253914405	3.13225705037388	3.07062033043167	3.6250608969928	3.28613277686568	3.23969813717757	0.476040179235766	0.394719430186101	0.693696530342229
Merged-chr15-98477888-3	chr15	98477801	98478001	+	943.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4782.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	3.84166394625079	3.44669990974768	3.94004580825594	4.16480302253345	3.8374851235173	3.73937908487143	3.72178323093922	4.15308558748253	-0.0291016209976452	0.953863719816474	0.983588075847329
Merged-chr6-57825050-4	chr6	57824935	57825135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146168)	promoter-TSS (NM_146168)	90.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	5.88563358864287	5.90146790026154	6.50590080222154	6.13005191775124	6.28908780962572	6.24867944666713	6.41024935427176	6.15128873395576	0.22962999771358	0.362045550051339	0.667306442775501
Merged-chr14-75180243-2	chr14	75180143	75180343	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	43818.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	3.96694797449187	4.64574994328937	4.44309879838267	4.03481050560248	4.37447004581663	4.65186718280389	4.11161172684667	4.17630411607264	0.109918966160302	0.803534576625239	0.924180969017854
Merged-chr18-60625403-5	chr18	60625273	60625473	+	787.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1068.0	NM_177340	104027.0	Mm.252321	NM_177340	ENSMUSG00000043079	Synpo	9030217H17Rik|9130229N11|9330140I15Rik|AW046661	synaptopodin	protein-coding	3.24526265055448	3.17704205780245	3.40081379393947	3.08456060211489	3.12779415526954	2.96968017627597	3.05776536938925	3.34956687773118	-0.352880987102575	0.538134084756426	0.791352726460709
Merged-chr17-14990258-3	chr17	14990158	14990358	+	982.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123370, intron 11 of 11)	intron (NM_001123370, intron 11 of 11)	11394.0	NM_001123370	100041574.0	Mm.393767	NM_001123370	ENSMUSG00000036552	9030025P20Rik	D17Zt9e	RIKEN cDNA 9030025P20 gene	protein-coding	4.59499162749896	4.56828407144375	4.66445927566639	4.29083786400167	3.89159820566937	4.09537659268201	4.25661640355564	4.07751486920676	-1.11114198047874	0.00725637313135858	0.0625152969156345
Merged-chr2-71898648-2	chr2	71898548	71898748	+	791.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360002, intron 10 of 10)	intron (NM_001360002, intron 10 of 10)	23744.0	NM_001360002	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	2.41447485846993	2.41363562691374	2.68318863094522	2.15549391224249	2.54742682701185	2.66373167314707	2.73083421966615	2.68166787526885	1.26415130802154	0.0847322444139142	0.316759958323353
Merged-chr2-167685370-4	chr2	167685276	167685476	+	924.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3539.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	4.59980606153489	4.90662278637291	4.60053793828572	4.73366128294158	4.50978908176354	4.46187602593554	4.53878947334313	4.74930753223721	-0.332897421579206	0.346979736924246	0.655058501830912
Merged-chr19-53143336-4	chr19	53143242	53143442	+	882.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013758)	promoter-TSS (NM_013758)	586.0	NM_001164100	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	4.35441560823554	3.97516391988614	4.39397936628752	4.22132484806767	4.01849131296729	4.11540128063297	4.12250673471998	4.09037623646957	-0.402720584820564	0.327147355747964	0.638690628782587
Merged-chr7-43407805-3	chr7	43407716	43407916	+	764.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172900)	promoter-TSS (NM_172900)	-464.0	NM_172900	243958.0	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	3.29248851155854	3.48948163154324	3.47538918123106	2.91142179623291	3.70241982905777	3.70401941477577	3.6198318881628	3.68272506531002	1.27027536767801	0.0195362335067059	0.125968798330811
Merged-chr10-30660753-4	chr10	30660649	30660849	+	959.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 10 of 14)	intron (NM_001358842, intron 10 of 14)	-4882.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	4.56568286773272	4.93709254196452	4.69720396466258	4.84141631300426	5.28467409813268	4.99017999455795	4.83032013320304	4.95582692743459	0.517686893493831	0.125492696797805	0.393291857404497
Merged-chr7-19028277-3	chr7	19028189	19028389	+	997.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360713, intron 1 of 22)	intron (NM_001360713, intron 1 of 22)	3912.0	NM_026605	68188.0	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	5.02167802317724	5.25719042554923	4.86441111259392	5.06930008952372	4.11905464125697	4.11518132956146	4.15048448156568	4.55856004822212	-1.83406686851079	2.16727885819259e-06	7.01522245781222e-05
Merged-chr7-30592596-4	chr7	30592511	30592711	+	927.520874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021397, intron 1 of 5)	intron (NM_021397, intron 1 of 5)	331.0	NM_021397	58206.0	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	4.16592903303415	4.33318648768779	4.6035990463406	4.48417188937464	4.51085422590325	4.44220674913786	4.29504855783401	4.70673258550578	0.197257763145426	0.606219099143418	0.829351704182035
Merged-chr18-11695619-1	chr18	11695519	11695719	+	683.0	f0_balb.idr	intron (NM_001081223, intron 5 of 18)	Lx7|LINE|L1	38270.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	3.58372826499988	3.45333233258759	3.53059774587389	3.67035355553296	3.67284883569979	3.52949952104142	3.56996727621254	3.47285855133406	-0.00269248535175489	0.995578298946607	0.998377456742254
Merged-chr13-34994203-4	chr13	34994104	34994304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073427)	promoter-TSS (NR_073427)	-60.0	NM_001110331	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	7.27264515687035	6.80821660457086	6.69909161623016	6.66760029093394	6.82541252016044	7.07605598644451	7.00260369814119	6.99691967836427	0.137430384271664	0.538220185000336	0.791430288562139
Merged-chr6-146686157-4	chr6	146686103	146686303	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28985.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	5.68607786055445	6.23929679447177	5.7799704393032	5.39800125865392	5.26083335630646	5.30137371992672	5.23560445051284	5.18899191924856	-0.966320737098918	0.00238656947737315	0.0267559661096146
Merged-chr5-64396391-3	chr5	64396277	64396477	+	644.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	71565.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	3.39897773412866	3.30013992371102	3.24877777104536	3.2717903944789	3.01272255947789	2.75549169390145	3.00506875989267	2.87937186763107	-1.62341089199277	0.00940640112671571	0.0755642334917714
Merged-chr15-33340793-3	chr15	33340696	33340896	+	678.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176073, intron 4 of 7)	MLT1B|LTR|ERVL-MaLR	65143.0	NR_033608	73486.0	Mm.483393	NM_028551	ENSMUSG00000058101	1700084J12Rik	-	ribosomal protein L7-like 1 pseudogene	pseudo	3.04392012712964	3.01488925542175	3.10951936161376	3.4176301986502	3.19840776158513	3.45580095153812	3.32870671154106	3.28611306481402	0.528092708964786	0.359651150797082	0.665443059431823
Merged-chr17-45566389-3	chr17	45566365	45566565	+	869.125	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357105, exon 4 of 4)	exon (NM_001357105, exon 4 of 4)	2529.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	2.70050818637398	2.66248767671551	2.76082823643443	2.57309807543619	2.6253773431745	2.53120561835042	2.42322998035919	2.81647892607699	-0.321796714665934	0.63663825282738	0.846365854167836
Merged-chr11-79089837-3	chr11	79089714	79089914	+	688.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	IMPB_01|Satellite|Satellite	-29978.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	3.30296296051108	3.3336529916895	3.30338881706537	3.36007448236154	3.35572402428518	3.68249695985175	3.1709516552569	3.11481578074707	0.0766982269090423	0.888489594100258	0.958180162421076
Merged-chr11-74993250-4	chr11	74993150	74993350	+	860.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 10 of 18)	intron (NM_001002764, intron 10 of 18)	67378.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	3.79516480217022	3.95777031157611	4.04348283609766	3.91830568226152	3.78207158872604	3.60955817785453	4.29966782924186	4.12761825410888	0.141772066534704	0.762439006849684	0.906949030953117
Merged-chr12-76537620-4	chr12	76537516	76537716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	4056.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	8.46469862234896	8.66720702813778	8.77017415630943	8.90283678278998	8.48302169214071	8.51899287830698	8.76225002788438	8.54966531369898	-0.169466464768207	0.311142275758218	0.623203873320601
Merged-chr13-23621209-4	chr13	23621094	23621294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178194)	promoter-TSS (NM_178194)	-70.0	NM_178194	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	7.15229897715811	7.28171781748325	6.87715270126295	7.51501056740201	7.41591277289161	7.29515772982501	7.61593310219081	7.46974346933572	0.28337577186313	0.177322373312209	0.472667086469301
Merged-chr16-91355876-2	chr16	91355776	91355976	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3A1|LTR|ERVK	-16907.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	3.79016522302864	3.60424505579867	3.99416886761823	3.84189373672613	4.23946987227766	3.9657780575112	3.92945469881673	4.12537771861733	0.719386371109897	0.101266733500579	0.349273541514549
Merged-chr11-77980426-4	chr11	77980331	77980531	+	885.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2385.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	4.07128425813369	4.0430205006805	3.4899653179208	3.58542344735639	4.11001792778486	3.96035475918727	3.87240070177675	3.67378458423382	0.284737992550556	0.563867838744146	0.806501535094334
Merged-chr18-25883562-4	chr18	25883452	25883652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129395.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	7.39488239648069	7.52899513276447	7.80246992227796	8.07816873074046	7.56553104715826	7.61495995002934	7.84468597498702	7.8046926395099	-0.0387650666824821	0.853866339733493	0.944905950148447
Merged-chr16-22120273-2	chr16	22120173	22120373	+	897.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	43026.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	2.89874464614682	3.048275361634	3.32297233341453	2.91350680257931	3.22089343913874	3.20895901372302	3.20253160167495	3.26836715696896	0.693887064345472	0.221047706080078	0.529103630866391
Merged-chr2-5951893-4	chr2	5951756	5951956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081132, intron 1 of 21)	CpG	387.0	NM_001081132	326622.0	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	5.4106462006862	5.05962018048945	5.06087795450485	5.00826224853135	4.95327850121396	5.16636811066617	5.06927097726485	4.95222678203426	-0.192556074395701	0.540321220902982	0.792751044701598
Merged-chr2-102945284-3	chr2	102945186	102945386	+	848.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43621.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.69466419400723	3.26550651614322	3.12472294971056	3.32854849605436	3.3047530110781	3.55722652331738	3.48159198891572	3.73808181089875	0.531217471313191	0.327213324909464	0.638738585322506
Merged-chr17-5758674-2	chr17	5758574	5758774	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39983.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	2.95608641288269	2.95086819979517	2.95647780566323	2.77183675089057	2.61279815778818	2.87362438588245	2.94515948095021	2.95489489616528	-0.257391850807197	0.681661262754446	0.869549042484609
Merged-chr1-30950016-7	chr1	30949926	30950126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002688)	promoter-TSS (NR_002688)	-271.0	NM_011200	19243.0	Mm.491181	NM_011200	ENSMUSG00000026064	Ptp4a1	AA415290|AU019864|C130021B01|Prl-1	protein tyrosine phosphatase 4a1	protein-coding	8.3777816426045	8.47664781828563	8.70436102578742	8.28964468318348	7.81623810128094	8.47590927624473	7.97912781275085	8.15084518407	-0.438284937816705	0.0268644538967403	0.155780738349564
Merged-chr10-69254591-4	chr10	69254489	69254689	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252637, intron 4 of 10)	MIRb|SINE|MIR	41395.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	5.84912149808491	5.34620244344546	5.7826639441253	6.23752165013953	5.25506025053957	5.11515539006237	5.72986067244448	5.68257235660794	-0.646425328789387	0.0517301633990075	0.236441360083346
Merged-chr7-110121846-4	chr7	110121741	110121941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355058)	promoter-TSS (NM_001355058)	-218.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	8.92158999381708	9.14035427323692	9.05352194130808	9.1291757197039	9.04513494225224	9.29870092790871	9.37493046589064	9.03408715265251	0.159114804562332	0.308175943143317	0.620527735700089
Merged-chr7-24530534-4	chr7	24530447	24530647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153134)	promoter-TSS (NM_153134)	-101.0	NM_153134	210146.0	Mm.41108	NM_153134	ENSMUSG00000041037	Irgq	AF322649|FKSG27|Irgq1	immunity-related GTPase family, Q	protein-coding	7.44032435255103	7.82070032842227	7.5292291233808	7.63260778626881	7.93657397828062	7.71613185445333	7.80571311956243	7.88855515334809	0.294421866009867	0.0940999342341642	0.335575592411038
Merged-chr12-32897699-4	chr12	32897619	32897819	+	923.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56070.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	4.44586423148512	4.63287571680289	4.5252629373631	4.26294708965425	4.45442230387506	4.19752237562659	4.20749004475546	4.27026344271086	-0.398904060086309	0.309297519079648	0.621622697166796
Merged-chr3-89228315-4	chr3	89228212	89228412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013605)	promoter-TSS (NM_013605)	-744.0	NM_013605	17829.0	Mm.16193	NM_013605	ENSMUSG00000042784	Muc1	CD227|EMA|Muc-1	mucin 1, transmembrane	protein-coding	5.77552366507961	5.82231524424545	5.552384542069	5.83423741547056	6.63408550100148	6.14299980084589	6.10144335688254	5.8948466029558	0.752304595128249	0.00615319036242023	0.0552723292285095
Merged-chr8-111990118-4	chr8	111990030	111990230	+	979.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357185, intron 2 of 8)	intron (NM_001357185, intron 2 of 8)	2172.0	NM_001357184	30947.0	Mm.282162	NM_013925	ENSMUSG00000031949	Adat1	MMADAT1	adenosine deaminase, tRNA-specific 1	protein-coding	5.15325398206566	4.57086498132972	4.31237208161162	4.69769483148671	4.98528146742028	5.13755937817794	4.93958510872535	5.36587682240047	0.786322276908602	0.0329405811350669	0.178139425681195
Merged-chr2-153156263-4	chr2	153156146	153156346	+	795.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5055.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	3.48549543397713	3.4896154032838	3.43083953670831	2.99318816335611	3.65833963900869	3.65673569276984	3.36050874218516	3.31138479703878	0.520750556144316	0.34725922625593	0.65539695498867
Merged-chr16-25059192-4	chr16	25059067	25059267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040374)	promoter-TSS (NR_040374)	-472.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	5.68884717372768	5.82752525167201	5.91357641242437	5.72898739100239	5.05556645737739	5.25564596480949	5.19602422366293	5.92961189027036	-0.664495745614774	0.0366452441837753	0.190559017808076
Merged-chr13-112532907-3	chr13	112532801	112533001	+	800.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139299, intron 12 of 16)	intron (NM_139299, intron 12 of 16)	47761.0	NM_139299	218624.0	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	3.75926359631581	3.2941525865561	4.04765190430226	3.84581221680709	3.69935513428468	3.64427781691099	4.29490435194409	3.90937492269104	0.416420801201224	0.434222108012439	0.723549984221041
Merged-chr16-33985547-4	chr16	33985444	33985644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 56 of 59)	intron (NM_177357, intron 56 of 59)	-18506.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	5.73946813996664	5.76725439802411	5.64101482724406	5.1374385802188	5.8300730030948	5.81570598745346	5.63788839343611	5.52917688652678	0.229481183312876	0.440277223610761	0.727741310566664
Merged-chr12-85541386-4	chr12	85541291	85541491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57714.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	7.60140431637226	7.55546505760559	7.56738901351432	7.75111869007055	7.53765998834485	7.68035193317365	7.77990016946222	7.45988965938573	-0.0137763415312695	0.937718781851397	0.977446111551425
Merged-chr7-107610989-3	chr7	107610878	107611078	+	913.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163557, intron 1 of 25)	RMER19B|LTR|ERVK	4134.0	NM_001163557	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	3.53564288964023	3.15169477056133	3.6343356786096	3.47798004952573	3.3602350744551	3.42684620965641	3.36044627130954	3.42784677424295	-0.231136664657338	0.659332856549318	0.858234860598338
Merged-chr17-47688998-4	chr17	47688947	47689147	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025365)	promoter-TSS (NM_025365)	-661.0	NM_001164729	66119.0	Mm.89912	NM_025365	ENSMUSG00000033475	Tomm6	1110002E23Rik|AI663970	translocase of outer mitochondrial membrane 6	protein-coding	4.54829543952588	5.03405323198391	4.3700116904332	4.60305663281746	4.56294369649121	4.68107676483669	4.56896718631413	4.58718881508085	-0.145091844843124	0.697049856045851	0.877587938720243
Merged-chr18-20815559-4	chr18	20815447	20815647	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69143.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	5.33490242092929	5.56272936247565	5.66159422591233	5.5079586457632	5.2101751353938	5.48051543973744	5.63281481688755	5.2687354238795	-0.211258016254143	0.461060399373141	0.7429215866116
Merged-chr15-73645311-4	chr15	73645175	73645375	+	979.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-20531.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	4.37277536703377	4.53593662219996	4.67076529590606	4.68899685870572	4.71632370895567	4.72466017484855	4.61075309960921	4.66770302632506	0.211914041220712	0.544313953523433	0.795184841840149
Merged-chr5-123891864-4	chr5	123891782	123891982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11862.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	5.80270013625695	6.05801893397748	5.35904854632942	5.42204998526122	6.05449625111437	6.00116802529423	5.70214899739452	5.45117879957074	0.234523577148322	0.449673929546593	0.734839862538956
Merged-chr13-76638467-2	chr13	76638353	76638553	+	702.333374	f0_c57.idr|f1_balb.idr	intron (NM_030174, intron 1 of 20)	MIR|SINE|MIR	253492.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	3.11086264968184	2.95813301904755	3.03640154815919	3.27349463308412	3.96378877533383	3.36692952396022	3.85210772528412	3.86859545442234	2.25960667313404	0.000220278956062258	0.00393950648581796
Merged-chr17-35121387-4	chr17	35121280	35121480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303476)	promoter-TSS (NM_001303476)	49.0	NM_001303445	13001.0	Mm.378901	NM_009975	ENSMUSG00000024387	Csnk2b	CK II beta	casein kinase 2, beta polypeptide	protein-coding	8.42168074758505	8.63291666320427	7.8076581201596	7.79188989564662	8.4664846668795	8.4745273691093	8.06680641619776	8.15057618481435	0.11247339605594	0.632326664978476	0.843849104495996
Merged-chr11-23810988-3	chr11	23810893	23811093	+	818.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40023.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	3.30100998496975	3.2858752816036	3.41257702545898	3.27308555444825	3.05910649436127	3.22530843510178	3.63404921283578	3.41064884466421	0.1079099146463	0.844913930847188	0.941218991545198
Merged-chr11-88235583-4	chr11	88235489	88235689	+	952.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	31201.0	NM_001291271	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	4.40946874579936	4.303120311758	4.32031175052654	4.30454121137527	4.62822898779839	4.74272784224011	4.47340797212084	4.44999496989938	0.567536738543486	0.116847252245596	0.378220580608879
Merged-chr17-80295401-2	chr17	80295301	80295501	+	714.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360440, intron 2 of 3)	intron (NM_001360440, intron 2 of 3)	-4925.0	NM_001163759	106794.0	Mm.12412	NM_198942	ENSMUSG00000035051	Dhx57	AW494914	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	protein-coding	3.45584266815109	3.44436623439018	3.51529942607253	3.91593978679494	3.60711722398626	3.37477725148855	4.01113198788467	3.62389546085914	0.19086794798934	0.723512274498912	0.889624450832197
Merged-chr11-11668497-4	chr11	11668397	11668597	+	950.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17428.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	4.52401780037581	4.48346487724373	4.79514490993897	4.80610407189946	4.63809761675286	4.46965922138704	4.80608452274354	4.68314555016136	-0.0316538956337176	0.929278665209727	0.974391484333367
Merged-chr15-55090302-6	chr15	55090237	55090437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001355594, exon 1 of 10)	exon (NM_001355594, exon 1 of 10)	154.0	NM_183089	72107.0	Mm.486550	NM_183089	ENSMUSG00000022422	Dscc1	2010006I05Rik|2600005O03Rik|Dcc1	DNA replication and sister chromatid cohesion 1	protein-coding	4.92231187610605	5.09073833378016	5.67410066701191	4.92732900569026	4.82486852792203	5.10063022839403	4.89959745006997	5.33668306542231	-0.249809535910456	0.488341967993165	0.76118893988362
Merged-chr12-69403057-2	chr12	69402957	69403157	+	898.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_LTR|LTR|ERV1	30907.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	3.68787219930132	4.03079408917874	3.58554476234857	2.70149057132735	3.49009649798481	3.65236112994388	3.56996449384767	3.14559880454897	-0.392311002879242	0.566646258208206	0.807951645949796
Merged-chr7-45204590-4	chr7	45204496	45204696	+	973.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_201374, exon 1 of 20)	exon (NM_201374, exon 1 of 20)	296.0	NM_201374	384619.0	Mm.214931	NM_201374	ENSMUSG00000038292	Ccdc155	Gm1434|KASH5	coiled-coil domain containing 155	protein-coding	4.99822362295332	4.82943517286801	4.48920313752677	4.7218087487995	5.00411093626147	5.32057489692976	4.94190028469551	4.38719042173974	0.369395598965527	0.332122841778885	0.643147475446289
Merged-chr3-61344262-4	chr3	61344154	61344354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20253.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	6.4180070495458	6.55664758847528	6.46908327003053	5.81740898889705	6.47386879452054	6.89404180111173	6.06011205307023	5.7639610015359	0.0448440119184268	0.888487326589997	0.958180162421076
Merged-chr3-105811299-3	chr3	105811185	105811385	+	714.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4282.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	3.34791471548963	3.40814305447188	3.34836194900167	3.28863296431554	3.25506595954265	3.28165774962561	3.27985612979848	3.29030515793732	-0.256165754361746	0.621727478686077	0.837999133509723
Merged-chr10-25464454-4	chr10	25464370	25464570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 4 of 16)	intron (NM_001358754, intron 4 of 16)	56102.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	6.50901409986065	6.6191743148761	6.60693323999472	6.78209026752769	6.7174463218439	6.42856568600784	6.5732516947565	6.38288509189084	-0.147973208663166	0.494923858943841	0.765380871135718
Merged-chr11-51617976-6	chr11	51617907	51618107	+	775.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1766.0	NM_026631	52530.0	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	3.47480946139879	3.66936046547377	3.35275750580899	3.16871362593184	3.77540345611906	3.75898707379463	3.67469919435171	3.63790358596405	0.957245091047987	0.0566294493707635	0.249267976637354
Merged-chr8-88697549-3	chr8	88697440	88697640	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128170, intron 1 of 17)	intron (NM_001128170, intron 1 of 17)	512.0	NM_001128171	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	5.23112946666371	5.34160370062918	5.40604841347692	5.05996173604838	5.1199887200226	5.17067466603321	5.29552724559888	5.25910396769129	-0.0780483188126867	0.793474491522398	0.92004938450921
Merged-chr14-30548306-8	chr14	30548237	30548437	+	917.5520630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009388)	promoter-TSS (NM_009388)	-794.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	3.10739023599209	3.24942427282559	3.36673498191874	3.33318542074511	3.57893358504775	3.42134689274053	3.29457942293943	3.9634611129755	1.06325113294648	0.0517710403629538	0.236567431597528
Merged-chr12-24974987-4	chr12	24974892	24975092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081378)	promoter-TSS (NM_001081378)	60.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	6.27741916735797	6.56637101396554	6.66567051201077	6.45914493303359	6.4894906585873	6.53149135208151	6.42861764233104	6.43987347060665	-0.0366742984055917	0.86451105837747	0.949184219382502
Merged-chr1-151817075-4	chr1	151816962	151817162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311165, intron 20 of 20)	intron (NM_001311165, intron 20 of 20)	61688.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	5.87827147141962	6.13757108225324	6.31148790871393	6.04561803508701	6.04514802267232	5.81747363171019	6.3628314939491	6.23535630339343	0.0492040413263992	0.845625296944963	0.941557049643182
Merged-chr7-29984237-2	chr7	29984137	29984337	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_001033355, intron 1 of 9)	intron (NM_001033355, intron 1 of 9)	282.0	NM_001167872	243905.0	Mm.322432	NM_001033355	ENSMUSG00000074221	Zfp568	C80731|Gm1691|Znf568|chato	zinc finger protein 568	protein-coding	6.17052302968954	6.47564696273154	5.60765553536429	5.28545671697304	4.38628604086312	4.87780044508392	4.56136768247064	4.68103007345467	-2.48969249954163	5.06511208818865e-10	3.42708757913669e-08
Merged-chr5-74641227-3	chr5	74641128	74641328	+	894.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159577, intron 2 of 10)	intron (NM_001159577, intron 2 of 10)	36644.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	4.57052957345227	4.36540979096061	4.60621149637319	4.75739805715395	3.80226678500822	3.81538105711912	4.0883299758226	4.1032652093705	-1.62331092525534	0.000133314669250493	0.00258420611181395
Merged-chr2-160011527-4	chr2	160011419	160011619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5134.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	6.40357336580241	5.52341444462055	6.17457964435465	6.15036891838864	5.36222769494114	5.48087928666975	5.86162244303105	5.71842925869202	-0.784241777348002	0.00982995830102962	0.0779161026624707
Merged-chr12-85078030-3	chr12	85077938	85078138	+	797.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17577.0	NM_001361239	73422.0	Mm.311944	NM_175198	ENSMUSG00000042320	Prox2	1700058C01Rik	prospero homeobox 2	protein-coding	3.44944661910389	3.51290575019396	3.63574660080087	3.06882851998898	3.13226109023356	2.92940173117547	3.03180021582458	3.10658342906175	-1.44370908202604	0.0188647124276666	0.123025372253782
Merged-chr12-117379268-3	chr12	117379092	117379292	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42180.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	3.73663880064539	3.75322735539747	3.83245221762986	4.29100314142273	3.39772741222614	3.30787698668572	3.32418422819017	3.39872023208906	-1.92328989608114	0.000417545780368422	0.0066563249945899
Merged-chr9-44074567-2	chr9	44074467	44074667	+	933.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016808, intron 1 of 12)	intron (NM_016808, intron 1 of 12)	5138.0	NM_016808	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	2.56924068864884	2.87094504075886	2.49621204327838	2.62497460535396	2.78885873181491	2.87466929664928	2.75785540162389	2.76646140883751	0.703594252087557	0.279836281361058	0.591913068586334
Merged-chr5-35795508-2	chr5	35795444	35795644	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177678, intron 1 of 19)	intron (NM_177678, intron 1 of 19)	37664.0	NM_001177698	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	2.78442088493968	2.70556796465575	3.03306192075651	2.78008762361628	2.82517009179261	3.0856219566615	2.96387258622005	3.03135246739204	0.652380715645163	0.282124346353108	0.594262809217208
Merged-chr14-51090432-7	chr14	51090258	51090458	+	839.404785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021472)	promoter-TSS (NM_021472)	-719.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	3.61873909222774	3.6276626338403	3.56291906733429	3.63349461669019	3.98115637395725	3.89407596714781	3.6052153955383	3.56106542137904	0.506357284148278	0.285822603110782	0.597484395056184
Merged-chr16-4626711-4	chr16	4626614	4626814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030205)	TTS (NM_030205)	-1768.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	5.98458229359436	5.36957606702134	6.33095388967045	6.23918398413347	5.9450333296407	5.94758025235983	6.15728518074074	6.16573307987947	0.0304461501294007	0.917687227323914	0.969715853936325
Merged-chr15-89210696-4	chr15	89210604	89210804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027805)	promoter-TSS (NM_027805)	-855.0	NM_026813	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	5.32834261019531	5.05510910406229	5.13219243031984	5.01856392260099	5.58708343901098	5.69923023057968	5.54896441095398	5.64622034854209	0.877478163846965	0.00157960641892836	0.0194759752802532
Merged-chr5-65987003-4	chr5	65986898	65987098	+	897.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_027961)	TTS (NR_027961)	17287.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	4.51242106197088	4.60300405489873	4.7832254829882	4.60446925178058	4.48484881131206	4.72848783414001	4.65260553819305	4.67147191971702	0.00664645100649461	0.984770114824471	0.994423901984608
Merged-chr6-32511123-4	chr6	32511014	32511214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040277)	promoter-TSS (NR_040277)	-27.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	6.18720877400897	5.94604405736502	6.16937106859827	6.49350901709773	5.87943795813389	5.28981782449617	6.17504190702214	5.98042484695787	-0.547060710027855	0.0618748411552229	0.263183184335241
Merged-chr14-27382107-2	chr14	27382007	27382207	+	912.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 4 of 10)	MER21B|LTR|ERVL	20718.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	3.42577861898499	3.10176589195626	3.08998436654035	3.1096693018764	3.2116269568712	3.200384361687	3.14130985376163	3.37406041032146	0.192123208413455	0.72726157832382	0.89142174034391
Merged-chr5-129895674-4	chr5	129895576	129895776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183088)	promoter-TSS (NM_183088)	-47.0	NM_001359408	71970.0	Mm.422716	NM_183088	ENSMUSG00000034173	Zbed5	2410018M08Rik|Scand3	zinc finger, BED type containing 5	protein-coding	7.92096614600748	7.90369905716722	7.87044217308904	8.34101064597167	8.33763323963652	8.14257428164269	8.11587985093887	8.03499431095652	0.166976745491073	0.373569200793309	0.677113210162732
Merged-chr4-41640292-4	chr4	41640204	41640404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027147)	promoter-TSS (NM_027147)	-2.0	NM_027147	69638.0	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	7.47548358444784	7.51259244732558	7.92850341639752	7.46487251650184	7.84426548502341	7.85140918369799	7.77727349152071	7.46185431918304	0.185084651590394	0.347591697631153	0.655546119710951
Merged-chr15-63895760-2	chr15	63895660	63895860	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028992, intron 5 of 11)	B3|SINE|B2	15053.0	NR_108053	665769.0	Mm.290602	NR_108053	ENSMUSG00000093867	Gsdmcl2	4921501E01Rik|4930453O09Rik|Gm7779	gasdermin C-like 2	pseudo	3.15256646061903	3.14188033196953	3.1529802989431	2.98904822382186	2.83396406768867	3.20437408848175	3.14101031967546	3.41679671412231	0.214619523807492	0.715108658039578	0.886010584897636
Merged-chr15-51734412-4	chr15	51734304	51734504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131057.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	6.72028908121275	6.28867513117337	6.85695559901634	6.78137589605391	6.75217325246307	6.72975542353124	6.61384607641926	6.12540023353753	-0.140768284456537	0.572175871881601	0.811128321794733
Merged-chr9-25504920-4	chr9	25504825	25505025	+	957.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	23328.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	4.55102877796522	4.72945857407353	4.50796282611012	4.71720317471144	4.60277272680722	4.76831976903221	4.76420347499973	4.95101028882745	0.277198391518386	0.422703405904971	0.71487373429267
Merged-chr4-66852234-4	chr4	66852132	66852332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24681.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	7.05998721638173	6.88506403283024	7.29696091719	6.76933058729056	6.1136459251504	6.3280841402479	5.9250504051708	5.92524157944916	-1.35472226153645	2.20841022351477e-08	1.09465481406377e-06
Merged-chr2-119277149-1	chr2	119277049	119277249	+	727.75	f0_balb.idr	Intergenic	Intergenic	-5923.0	NM_145530	228543.0	Mm.120274	NM_145530	ENSMUSG00000034226	Rhov	A030005A06Rik|Arhv	ras homolog family member V	protein-coding	3.26143573576633	3.32869669706343	3.10308301497878	3.38229005554364	2.77711820769295	2.65711197458703	2.6284828652818	2.7842508304259	-2.79624877850313	0.000168953632606625	0.00316056520770223
Merged-chr8-43367871-4	chr8	43367766	43367966	+	765.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60857.0	NM_009556	22702.0	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	3.66405112906424	4.04908135097647	4.07845601334887	4.32233735985415	4.07504694152914	4.44038211897936	4.62287382793058	4.50517032047461	0.865201895321417	0.059439866570742	0.256977056768637
Merged-chr14-120452423-4	chr14	120452327	120452527	+	848.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26034.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	4.50832391691221	4.59029032257315	4.4702925972501	4.2498019880681	4.29206053485242	4.18053070107291	4.28313300107955	4.20647384256804	-0.493704572640962	0.205045813943477	0.508640526245844
Merged-chr2-170507925-4	chr2	170507826	170508026	+	942.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040367, intron 1 of 2)	intron (NR_040367, intron 1 of 2)	-3304.0	NM_001110152	109054.0	Mm.28808	NM_001013369	ENSMUSG00000052033	Pfdn4	0610025M10Rik|1810063B06Rik|C-1|C1|Pfd4	prefoldin 4	protein-coding	4.94188070285924	4.7823118477371	4.45523505934268	5.13502689833511	5.0857824403085	4.85674075898627	4.65949090700018	4.93936115449813	0.0621856171462316	0.864453567065929	0.949170626350062
Merged-chr2-165933985-3	chr2	165933898	165934098	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49160.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	4.6226729558416	4.48603397390461	4.68612038469928	4.69303802682387	3.28589006199851	3.42233943844894	3.51898890387929	3.66735274918571	-3.78100144377497	1.32239403860816e-10	9.93945990222707e-09
Merged-chr7-125608023-4	chr7	125607952	125608152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021887, intron 1 of 8)	intron (NM_021887, intron 1 of 8)	4623.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	6.82051883864908	7.46360921496442	6.76402467580228	6.48013269658665	7.13201454471268	6.99886084292032	6.9935951247251	6.44246263141553	-0.0168065399315212	0.951880314317524	0.982868085362717
Merged-chr1-87555216-4	chr1	87555090	87555290	+	993.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111314, intron 1 of 14)	MTE2a|LTR|ERVL-MaLR	18680.0	NM_001111314	53972.0	Mm.435439	NM_019867	ENSMUSG00000026259	Ngef	Tims2|ephexin	neuronal guanine nucleotide exchange factor	protein-coding	5.54534100834594	5.45641996396406	5.62630275416266	5.66834992225095	5.85663911978093	5.15039885250008	5.87312046563886	5.6478831138916	0.155932735845259	0.594415046335159	0.823411261518897
Merged-chr1-16619351-4	chr1	16619250	16619450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025773)	promoter-TSS (NM_025773)	-12.0	NM_001271017	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	7.81892966425881	7.70757405138671	7.38293351933685	7.6323541570599	7.99000145481648	7.87930969133435	8.0813742873444	7.72925354357697	0.369281898385846	0.0423083957739	0.208723960548269
Merged-chr17-31558194-4	chr17	31558135	31558335	+	897.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-6538.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	4.25979673084536	3.78656252587536	4.34008105993476	4.06228306127126	4.06793182664681	4.30183696963648	3.69091381891854	4.0819144744233	-0.184778379615913	0.686566338450503	0.871790805704445
Merged-chr17-43569990-1	chr17	43569890	43570090	+	1000.0	f0_balb.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	1539.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	3.84068601713241	4.05872348320255	4.24360438623335	4.01376160747033	3.93400674317032	3.8507401784778	3.71757650032544	3.78548408402319	-0.603778226126373	0.17534959564234	0.470052303676838
Merged-chr18-67725199-2	chr18	67725099	67725299	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127177)	promoter-TSS (NM_001127177)	-578.0	NM_008977	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	3.40781357858796	3.9698087585584	3.53020001227783	3.34259776845219	3.91439111185461	3.8138795832742	3.45808453049419	3.69222829328998	0.458868253755654	0.381418803706547	0.683647487636692
Merged-chr13-17836937-4	chr13	17836850	17837050	+	913.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31853.0	NM_027118	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	5.33711323523352	4.98053455367283	5.54683624182841	5.52074538916126	4.98793962155863	5.29688076789574	4.87880251349502	5.11816127950726	-0.550702849561573	0.0874701668425548	0.322506294142222
Merged-chr10-20056493-4	chr10	20056404	20056604	+	982.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008580, exon 9 of 30)	exon (NM_008580, exon 9 of 30)	-92416.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	5.21397822003823	4.94824545954555	4.91450898889085	5.29072429428239	5.0184896251477	4.891211512357	5.35426640147891	4.98430043397622	-0.0766292240136142	0.814234067774508	0.928326740082999
Merged-chr1-97630257-4	chr1	97630161	97630361	+	852.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31415.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	4.29039469618073	4.29508372301073	4.24674924810503	4.70749568538389	4.0182038950611	3.81650600154175	4.31415514076339	4.37248630237954	-0.653617318685459	0.135413878251843	0.409658271465803
Merged-chr10-10449269-4	chr10	10449189	10449389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 2 of 36)	intron (NM_001127353, intron 2 of 36)	23025.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	7.04512906607459	7.04188663152798	6.666633356101	6.64374578590926	6.8425065420362	6.97827006231754	6.87554273583089	6.83873705022857	0.0394315101359934	0.852003725283088	0.94421936565126
Merged-chr5-136088024-4	chr5	136087931	136088131	+	989.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	4115.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	5.4753306080385	5.83111396336498	4.87341089371408	4.81815240725972	5.28168914070934	5.33790662226067	5.03661161903007	4.6030187276183	-0.405591048952773	0.316900404944661	0.628905690750891
Merged-chr16-38457370-4	chr16	38457268	38457468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1565.0	NM_001359898	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	7.69692663933897	7.94037910417674	7.9408076928916	7.8101230983337	7.8196900157483	8.08253278104023	7.64415972109416	7.70957173979493	-0.0351459706647334	0.84467053373446	0.941125889580383
Merged-chr8-12672148-4	chr8	12672036	12672236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198031)	promoter-TSS (NM_198031)	-36.0	NM_198031	259279.0	Mm.142095	NM_198031	ENSMUSG00000000759	Tubgcp3	GCP3|Spc98p	tubulin, gamma complex associated protein 3	protein-coding	7.0091573063503	7.06800577402249	6.91865061700317	7.35378242986855	7.07506211614256	7.21221300538692	7.11820174014785	7.20438230880473	0.0485683925400408	0.807852080996116	0.925894979224023
Merged-chr4-139188122-4	chr4	139188039	139188239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4760.0	NM_009798	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	6.90853543445155	6.48898133769904	6.9097281872166	6.87300694060783	6.40971497847656	6.32564201841586	6.28295069448258	6.47381624346072	-0.628166499618546	0.00435705546462084	0.0428653560354176
Merged-chr17-24779682-3	chr17	24779589	24779789	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-24693.0	NM_029197	75178.0	Mm.52592	NM_029197	ENSMUSG00000024155	Meiob	4930528F23Rik|MLZ-675	meiosis specific with OB domains	protein-coding	6.47004712685296	6.60186572667593	6.58364970072774	6.15517435294213	3.73592446135651	4.08699312081641	3.99622468046039	4.08520085427803	-6.7659516223591	1.48662852072786e-18	4.10142370065459e-16
Merged-chr4-99200208-4	chr4	99200117	99200317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175029, intron 1 of 10)	intron (NM_175029, intron 1 of 10)	6070.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	6.76517992789698	6.9933739384022	6.70110050037606	6.99729917644751	7.74231710585494	7.58959077791833	7.6008138694633	7.739753432461	1.06032622799753	1.53064419649362e-08	7.82684793550426e-07
Merged-chr4-9060318-4	chr4	9060177	9060377	+	918.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-209016.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	3.94523144978751	3.97240775361863	4.09506960354213	4.24880506456551	3.77631544290255	4.01445056641523	4.25065216115068	4.42124386547121	0.133884551018217	0.765141898304576	0.908063811848429
Merged-chr4-120925042-4	chr4	120924947	120925147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160043)	promoter-TSS (NM_001160043)	-42.0	NM_001160043	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	6.74700971736943	6.94285058101419	6.5226953353055	6.60948143182748	7.03687814668065	7.21256278379893	6.91675573651452	6.68300531269689	0.370605751419079	0.091108006339695	0.329806071466875
Merged-chr11-103028430-4	chr11	103028320	103028520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008707)	promoter-TSS (NM_008707)	-123.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	8.14400783013158	8.44479304594008	8.2300483978328	7.87661510109015	8.21003348646387	8.5089204669313	8.12534796197138	8.33641924577426	0.148690277217265	0.430557165269256	0.721131075972996
Merged-chr17-21733737-5	chr17	21733649	21733849	+	859.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164676)	promoter-TSS (NM_001164676)	25.0	NM_001164676	381067.0	Mm.482723	NM_001164676	ENSMUSG00000061544	Zfp229	-	zinc finger protein 229	protein-coding	3.76640134926208	3.94671929575708	4.31911896762079	3.90316395997579	3.88929572209736	3.88739136156132	4.05469622131006	4.11471877548639	-0.0154967192035631	0.972154228107996	0.989936735419783
Merged-chr5-21326692-3	chr5	21326596	21326796	+	900.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 4 of 18)	intron (NM_029195, intron 4 of 18)	-45977.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	4.08765857325598	4.25363718580867	3.88475186602192	3.88568335320552	3.97098980860046	4.26013758062483	4.36029543065328	3.9364290886951	0.282437063386119	0.514818529895027	0.777276944122371
Merged-chr7-143624777-4	chr7	143624692	143624892	+	906.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175649, intron 1 of 7)	intron (NM_175649, intron 1 of 7)	3053.0	NM_175649	244237.0	Mm.247498	NM_175649	ENSMUSG00000045362	Tnfrsf26	Tnfrh3|Tnfrsf24	tumor necrosis factor receptor superfamily, member 26	protein-coding	4.16971433966826	4.72826226904528	4.27443392382368	4.39900502716866	5.0228477561208	4.59221499193949	4.48312996068302	4.65864940550644	0.662313973114929	0.0918400395269665	0.331427812486815
Merged-chr5-139075333-3	chr5	139075226	139075426	+	614.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359099, intron 4 of 10)	intron (NM_001359099, intron 4 of 10)	54426.0	NM_008923	19085.0	Mm.306163	NM_008923	ENSMUSG00000025855	Prkar1b	AI385716|RIbeta	protein kinase, cAMP dependent regulatory, type I beta	protein-coding	3.40143100880858	3.67394442268396	3.3368070528235	3.51748574401281	4.11679580677243	3.69721291079877	3.72060576105713	3.57794182395276	0.954325864503593	0.0583268791048487	0.253858527750845
Merged-chr12-103333078-4	chr12	103332980	103333180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 6 of 9)	MIR3|SINE|MIR	18121.0	NM_001195726	100504156.0	Mm.425749	NM_001195726	ENSMUSG00000096753	Fam181a	EG544888	family with sequence similarity 181, member A	protein-coding	6.55845964456889	6.45261840766541	6.79971423772434	7.05453422107876	6.80302997923194	6.59756203216027	6.45851676881466	6.71019292462707	-0.141830872333453	0.548999601844702	0.797790253922268
Merged-chr2-35196068-4	chr2	35195977	35196177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026697, intron 1 of 7)	B1F1|SINE|Alu	5043.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	5.00757996571086	4.92567791415674	4.86952503128618	4.76751181625984	5.07143114687524	5.00644111415492	4.69212170503107	5.00501180716792	0.142900641141057	0.660058612864524	0.858704732057902
Merged-chr6-50378668-4	chr6	50378563	50378763	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	4174.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	5.29822927160903	4.96675652601902	5.10142286712505	4.90466084912003	5.81713003870565	5.53303599089953	5.33190610945822	5.54392798199526	0.93055413465836	0.0018623049379835	0.0221371080796138
Merged-chr9-108991789-4	chr9	108991680	108991880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173019)	promoter-TSS (NM_173019)	-122.0	NM_173019	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	8.42347826418249	8.50503974979329	8.45558486763342	8.33099657515642	8.40433151359431	8.64349790891602	8.62949522332935	8.38250821524125	0.114245074879386	0.46464259521388	0.745523090592339
Merged-chr6-120915434-4	chr6	120915350	120915550	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007544, intron 1 of 5)	intron (NM_007544, intron 1 of 5)	1374.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	4.0474635305384	4.17532529567054	3.82427137435686	3.69651391253575	4.32580126062041	4.00911930565163	4.56527537804237	4.74289634873497	1.24275731290912	0.00493412725283958	0.0471031034540829
Merged-chr10-59252144-3	chr10	59252033	59252233	+	703.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30211.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	3.41288321414863	3.51355645911405	3.09938086200457	3.31287006635878	3.24755263704351	3.6373300954784	3.45398457117075	3.51849232058538	0.421032720642812	0.42907811023317	0.720043163152745
Merged-chr6-103525844-4	chr6	103525746	103525946	+	825.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007697, intron 1 of 26)	intron (NM_007697, intron 1 of 26)	14970.0	NM_007697	12661.0	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	4.29950998754783	4.00173679151553	4.1253795860291	4.07358228848028	4.19672956534518	3.8046438915212	4.43213276938236	4.16881271736337	0.123841418300341	0.771594694178945	0.910424181300673
Merged-chr3-95635769-4	chr3	95635668	95635868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10788.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	7.4120068291225	7.40656560075978	7.84477519758695	7.86086091621229	7.45094530124738	7.36361974301735	7.50768353581409	7.09465164446192	-0.385616409645574	0.0634184059084064	0.267293860383376
Merged-chr15-58691611-2	chr15	58691511	58691711	+	942.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131816.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	3.44785696879395	3.36003141018541	3.39627744632488	3.37075062453743	3.24849611445054	3.20876808443739	2.95077843329634	3.44633772798372	-0.610876476701122	0.272531492112845	0.58395046219019
Merged-chr13-100452595-4	chr13	100452517	100452717	+	980.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008670, intron 1 of 15)	intron (NM_008670, intron 1 of 15)	247.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	4.97112112333294	4.84974267369281	5.36512482375872	4.29114761627296	5.64852339484717	5.64632504576226	5.3925658835854	5.44315475693409	1.16472017367224	0.00129676965614324	0.0165982318566121
Merged-chr5-5367122-4	chr5	5366967	5367167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	13184.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	4.18171576008647	3.94661040635121	4.24399688633792	3.38249509436936	5.73466843952371	5.53762049161933	5.55059925556987	6.24716765339469	3.96282129564834	6.01300000170229e-23	2.91156004844331e-20
Merged-chr8-126683732-3	chr8	126683631	126683831	+	875.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90295.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	3.1635431355187	3.19785911707113	3.10529796200303	3.26762379868	3.19607755667745	3.08632027751292	3.09450281009142	3.04247924311523	-0.317861372991133	0.567799842281199	0.808331754798167
Merged-chr2-60020044-4	chr2	60019928	60020128	+	979.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 2 of 35)	MTE2b|LTR|ERVL-MaLR	105712.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	4.79190295806295	5.12201613875587	4.58196124210557	4.96524088392699	4.92829613761581	4.88876906759876	5.07681814837199	4.97040532681934	0.149102587480888	0.65445567661256	0.855635636382923
Merged-chr17-48118802-4	chr17	48118722	48118922	+	815.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27485.0	NM_001177897	328829.0	Mm.466999	NM_177824	ENSMUSG00000073386	9830107B12Rik	Trem5	RIKEN cDNA 9830107B12 gene	protein-coding	4.15855885922404	4.26629486568341	4.45939510013401	4.57591383641001	3.99603391207532	4.28485421117113	4.18840601961716	4.20408055375266	-0.551742430692335	0.174486840067132	0.468954794938014
Merged-chr12-101102885-3	chr12	101102797	101102997	+	814.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-19195.0	NM_001160214	68734.0	Mm.87077	NM_211355	ENSMUSG00000041846	Ppp4r3a	1110034C04Rik|BC064465|Smek1|mKIAA2010	protein phosphatase 4 regulatory subunit 3A	protein-coding	3.26031225600103	3.44500051777658	3.68149529929196	3.40678830356846	4.09766400122428	3.7476843523855	3.71592514061057	3.62690101410167	1.13034438498581	0.0232874967752492	0.141490018984101
Merged-chr4-47347230-4	chr4	47347122	47347322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6000.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	6.40281875197362	6.31217496353576	6.61106124036712	6.539982252205	6.23125763330271	6.20093540700673	6.33623851733573	6.27194602271342	-0.320007580314529	0.144814027127096	0.424036712956412
Merged-chr15-6384196-3	chr15	6384087	6384287	+	971.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	-2561.0	NM_023118	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	4.65808583854798	4.51045856990595	4.26153104350424	4.61793029456589	4.12573245662355	4.01044088182874	4.45491590763021	4.21152507761007	-0.758494625544124	0.0585513515450586	0.254540774419169
Merged-chr10-78054823-4	chr10	78054740	78054940	+	871.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284199)	promoter-TSS (NM_001284199)	-495.0	NM_001284198	54427.0	Mm.13433	NM_019448	ENSMUSG00000000730	Dnmt3l	D6Ertd14e|ecat7	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding	3.68326147700398	3.87914722529481	3.89943701766243	4.16213312607065	4.03324416332673	3.79965230175295	4.02360365054869	4.03874377758881	0.122848865857021	0.786609386450837	0.91705817011472
Merged-chr10-94047266-1	chr10	94047166	94047366	+	576.0	f0_c57.idr	intron (NM_053072, intron 2 of 20)	intron (NM_053072, intron 2 of 20)	11265.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	2.99367890207379	3.19563668591318	3.26050289448574	2.73666305691404	3.25615542017256	3.49470061985793	3.65451348648705	3.57881507330851	1.67623380664632	0.00419456112815151	0.0416118002147312
Merged-chr9-67840361-4	chr9	67840276	67840476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177184)	promoter-TSS (NM_177184)	-20.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	5.85161269057683	5.96836776451197	5.85264511778657	5.30242000723301	5.88804922886226	5.93171010458998	6.21805725043902	5.80083854683869	0.351367038805024	0.220984290015045	0.529040790359911
Merged-chr15-27467038-3	chr15	27466930	27467130	+	790.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020332, exon 1 of 12)	exon (NM_020332, exon 1 of 12)	353.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	3.92827643026327	3.6468125858287	4.08005837693082	3.97688296177299	3.35229938161653	3.33282837903687	3.52652886345132	3.35735267912943	-1.80653682709384	0.000585306768035345	0.0087671612882971
Merged-chr1-153910072-3	chr1	153909931	153910131	+	811.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008131)	TTS (NM_008131)	10102.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	3.78380591433725	3.58349858614425	3.2014403637	3.43274749482402	3.34293560981782	3.37950092121983	3.37563340897757	3.44321290179333	-0.442499156028684	0.404308080059902	0.701411705444497
Merged-chr10-82623062-8	chr10	82622908	82623108	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001135567, exon 1 of 3)	5' UTR (NM_001135567, exon 1 of 3)	220.0	NM_001135569	544717.0	Mm.334867	NM_001135567	ENSMUSG00000063320	1190007I07Rik	-	RIKEN cDNA 1190007I07 gene	protein-coding	5.64327343123621	5.85310692229127	6.2353869457773	5.8396558254049	5.80833505063055	6.07159061952552	5.91122051642009	5.86932267946681	0.0124882981801057	0.961878439703249	0.986301121135992
Merged-chr1-190944501-4	chr1	190944379	190944579	+	854.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357133, intron 8 of 8)	intron (NM_001357133, intron 8 of 8)	15657.0	NM_001357133	52477.0	Mm.289914	NM_021421	ENSMUSG00000026634	Angel2	2610307I21Rik|5730410O10Rik|AI845692|D1Ertd396e|D1Ertd654e	angel homolog 2	protein-coding	3.30169246389495	3.46481924119959	3.79215138183151	3.72697323199472	3.63414625487017	3.47987315732705	3.68262894480107	3.54111099246265	-0.0144793282869774	0.977245088803443	0.991888117862217
Merged-chr18-62250708-4	chr18	62250602	62250802	+	883.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70602.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	5.01185712068867	4.88370500639801	4.11032983790527	4.36072259962567	4.94952602052475	4.55601544245011	4.49368765354229	4.71234883522711	0.12551971357348	0.766618747568317	0.908660493187862
Merged-chr7-123200977-4	chr7	123200859	123201059	+	800.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13907.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	4.16166549576314	3.63320960393013	3.82695053831607	3.50993494738822	3.69735936317305	3.89686158602976	3.85817904825427	3.49444139749901	-0.160226336929009	0.751898476133751	0.902329068825205
Merged-chr17-29397110-4	chr17	29397051	29397251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36237.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	5.04511883926447	5.26820100798115	5.0801199676255	4.79263578122005	5.27891146162247	4.99838542513738	5.35173752115527	5.17384453082361	0.31941828601168	0.313601469210757	0.625522943764707
Merged-chr2-167624515-2	chr2	167624415	167624615	+	839.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_023230, intron 1 of 3)	intron (NM_023230, intron 1 of 3)	7490.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	3.1980619418811	2.75605845751854	2.69272494960102	2.66724874714846	3.21476408127857	3.0808737744773	2.95876109747663	3.19658823717922	1.17896327773007	0.0619538940401021	0.263296145912079
Merged-chr1-64301447-7	chr1	64301363	64301563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-180074.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	6.52762451794065	7.03624797286475	7.42238450439876	6.91467252393407	6.74696593517318	7.26526990370206	6.86670219192699	6.98759514864425	-0.0504451070329665	0.838897735263709	0.938856878340637
Merged-chr16-23287488-4	chr16	23287386	23287586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-2984.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	7.25889702100157	7.32741859124623	7.32431638406374	7.79886429534845	7.26753754218132	7.26158409638405	7.59076540130138	7.25508306868878	-0.148493946005908	0.484672710326198	0.758776203059615
Merged-chr9-75314225-4	chr9	75314126	75314326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073186, exon 1 of 12)	non-coding (NR_073186, exon 1 of 12)	158.0	NM_138719	14697.0	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	6.6187286003737	7.12870557548967	7.58467381991739	6.78391319916767	6.51296639519094	6.67780735570939	6.79733487808287	6.89512724556723	-0.494104373804082	0.0596290570702442	0.257432415435883
Merged-chr5-105662874-3	chr5	105662833	105663033	+	843.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-37036.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	3.25443030522004	3.47839511370207	3.46367259737803	3.71197195220051	2.78478021070742	2.81038109109373	2.85474738247103	3.13468250412946	-2.64627604322689	0.000119406431873937	0.00234915157942371
Merged-chr7-59163434-4	chr7	59163326	59163526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65324.0	NM_001033962	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	4.91905099785506	5.03478115045375	5.45051562620832	5.85136614554376	5.56647366905495	5.21613448918964	5.44969684672871	5.14164152666116	-0.0513612375547575	0.886503054982622	0.957444179369024
Merged-chr2-19528987-4	chr2	19528880	19529080	+	631.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027600, intron 4 of 16)	intron (NM_027600, intron 4 of 16)	24930.0	NM_027600	70909.0	Mm.158488	NM_027600	ENSMUSG00000026734	4921504E06Rik	4921522E24Rik	RIKEN cDNA 4921504E06 gene	protein-coding	3.47604427754942	3.54541753771084	3.21989851905736	3.46683126019136	3.72860679529312	3.99726662808195	3.67556719514921	3.41503663111667	0.891139969089815	0.0813174340231417	0.309417833291006
Merged-chr4-53414182-4	chr4	53414078	53414278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26235.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	6.84515342008916	6.92976569521198	6.32896916595349	6.57587490608324	6.38132744953562	6.4067156758506	6.71864882967277	6.41778767671338	-0.293787304283426	0.214777592450686	0.520767620011151
Merged-chr2-14336036-1	chr2	14335936	14336136	+	897.3333130000001	f0_balb.idr	Intergenic	Intergenic	-52362.0	NM_001012305	277468.0	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	4.03115938050473	3.5932881917344	4.35203442610439	4.06412527599356	3.70795046442585	3.78467868950508	4.01383577572363	3.83268405673785	-0.551271324350985	0.248973291113953	0.560207151982062
Merged-chr1-161252019-4	chr1	161251922	161252122	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007453)	promoter-TSS (NM_007453)	-812.0	NM_001303408	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	5.33165861113404	5.46256362614627	5.17549326499568	5.39616180178946	5.45384025840282	5.01516651006001	5.39113312406313	5.32887610833671	-0.0613588255284729	0.834989349480937	0.937161709816312
Merged-chr14-45219555-4	chr14	45219474	45219674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027518)	promoter-TSS (NM_027518)	-143.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	9.05656061957734	9.15158049032259	9.16972054266687	9.12074462018017	9.08034928245764	9.21499662084745	9.30209800343446	9.07955283956597	0.0565232110267376	0.687269060122033	0.872193208407699
Merged-chr9-110709931-4	chr9	110709810	110710010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028312, exon 4 of 7)	exon (NM_028312, exon 4 of 7)	32700.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	6.49627149554969	6.48744320295616	6.46337477177846	6.4678331358665	6.71271492670922	6.47503030454487	6.65023518923667	6.55817486829477	0.19079301707412	0.353675228670447	0.660498743284194
Merged-chr12-85177311-4	chr12	85177164	85177364	+	972.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008827)	promoter-TSS (NM_008827)	49.0	NM_008827	18654.0	Mm.4809	NM_008827	ENSMUSG00000004791	Pgf	AI854365|PIGF|Plgf	placental growth factor	protein-coding	5.0632135807054	5.95438784795366	5.62148114155272	5.63845547147469	4.78479731392209	5.2068710274128	4.92549912454188	5.29496273155145	-0.99770540586197	0.00349874696686557	0.0360453481479989
Merged-chr16-43951813-4	chr16	43951701	43951901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027801, intron 12 of 15)	intron (NM_027801, intron 12 of 15)	27249.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	7.00000925957348	7.03553824987719	6.86958623645222	7.37569034429191	6.80178210721002	6.97572427117215	7.3115530793427	6.63734040612332	-0.197355594473479	0.400151241312894	0.69809718640712
Merged-chr18-34181381-3	chr18	34181254	34181454	+	901.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39630.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	3.38851334728709	3.15012477933116	3.45718309582023	3.15630512123811	4.31175257154797	4.03548884345142	4.32622181482471	3.99787298047322	2.76437085808525	1.25895299720501e-08	6.56490955223851e-07
Merged-chr5-23969091-4	chr5	23968980	23969180	+	955.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053090, intron 10 of 10)	intron (NM_053090, intron 10 of 10)	61232.0	NM_001310471	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	4.44608426565146	4.42176234201713	4.62234673969548	4.78861583282705	4.89741212500697	5.20868542374962	5.09873687956301	3.94003534128367	0.592001368040189	0.197750700673838	0.499070386139272
Merged-chr13-113914451-4	chr13	113914360	113914560	+	820.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	119952.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	3.55183945427507	3.37681900581133	3.70775532929719	3.64273820784189	3.71856903928166	3.5516176295897	3.4250575517288	3.75331690856572	0.141611714883444	0.773854230784848	0.91166330938482
Merged-chr1-23397788-1	chr1	23397688	23397888	+	578.0	f0_balb.idr	Intergenic	Intergenic	-14613.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	3.23797708722834	2.96909385441132	3.06823910166426	3.52757940128886	2.93420216167942	2.97909694175279	2.93199500007621	3.12589573553851	-0.965564134292203	0.117929661606398	0.379892984408118
Merged-chr13-73718445-4	chr13	73718334	73718534	+	804.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17654.0	NM_028878	74338.0	Mm.271635	NM_028878	ENSMUSG00000021565	Slc6a19	4632401C08Rik|B<0>AT1	solute carrier family 6 (neurotransmitter transporter), member 19	protein-coding	3.83191805812367	3.64021230592878	3.5635822996848	3.97543355259381	3.83357874450322	3.67962637781848	3.95239859950614	3.67592848337964	0.0473399538578907	0.920773483042704	0.970622554300086
Merged-chr5-148379683-3	chr5	148379580	148379780	+	940.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007513, intron 1 of 12)	intron (NM_007513, intron 1 of 12)	13135.0	NM_001301424	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	3.62055310849862	4.01871229366143	3.35113644969011	3.49005632769782	4.013307096387	4.02134137956553	4.10585589840369	4.27909182075391	1.30342806058456	0.0071615568719103	0.0619684484057505
Merged-chr13-37346034-4	chr13	37345918	37346118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	673.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.58381671679868	5.86322723484209	5.11960870635656	5.08532621827247	5.46530709357175	5.75878993099817	5.65568685496119	5.52779524122613	0.268178805261474	0.403529776245446	0.700922982752502
Merged-chr18-12731563-4	chr18	12731481	12731681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 10 of 13)	intron (NM_028341, intron 10 of 13)	-9774.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	6.15660198892137	5.65470705112946	6.46286303685093	6.31065531429519	5.86839709513697	5.76053113194777	6.74934592901861	6.60805857653272	0.207590211095094	0.527418607746536	0.784361896301674
Merged-chr11-51539808-4	chr11	51539715	51539915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153393, intron 5 of 28)	intron (NM_153393, intron 5 of 28)	-44942.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	6.55796223309235	6.60036739651689	5.7536162450288	6.35707061597763	6.13908346184843	6.63932963273584	6.59926209076906	6.07755404544749	0.0354360395026079	0.901032339341729	0.96332884045309
Merged-chr6-83053802-4	chr6	83053678	83053878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007517)	promoter-TSS (NM_007517)	-743.0	NM_007517	11993.0	Mm.386752	NM_007517	ENSMUSG00000068328	Aup1	AA589454	ancient ubiquitous protein 1	protein-coding	5.63986962706923	6.4377214732898	5.58336911698493	5.40183102137714	6.33281000119839	6.22192862465319	6.03601116037172	5.54974056501811	0.377149257303143	0.269603331465658	0.581265068287797
Merged-chr8-122556808-4	chr8	122556729	122556929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5500.0	NM_001357349	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	5.89373300444323	5.88628876245242	6.01044904010401	6.34463239165649	6.06703026844061	6.11827880863766	6.46722742941832	6.33695743756782	0.286390038420543	0.269305108586853	0.580874797700108
Merged-chr8-31135823-3	chr8	31135712	31135912	+	755.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14504.0	NM_144927	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	2.96133145555918	3.3173796631197	3.04197209394596	3.03011432333458	3.58252296220962	3.62849251796424	4.26123327968579	3.75917685048742	2.48340482512582	1.82953909419449e-05	0.000470635212091326
Merged-chr3-144569314-2	chr3	144569214	144569414	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355234, intron 1 of 6)	intron (NM_001355234, intron 1 of 6)	902.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	3.08927062384623	3.0906661349217	3.20806043093723	2.76066977213007	3.40163487408847	3.1373301143159	2.95037277832623	3.36538211851651	0.749131033634142	0.212757631839396	0.517686236512371
Merged-chr12-73554347-4	chr12	73554224	73554424	+	952.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5841.0	NR_044985	73644.0	Mm.369885	NR_044985	ENSMUSG00000113800	2210039B01Rik	-	RIKEN cDNA 2210039B01 gene	ncRNA	4.35413078215204	3.91739102426802	4.62102255643049	4.07230441906539	4.40937320532239	4.44045388119392	4.24821781999696	4.26454479730379	0.213837754666322	0.610988630369716	0.832113112679589
Merged-chr18-62188939-4	chr18	62188812	62189012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8812.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	6.33873733377183	6.43352434007801	5.88742759365179	6.21111094615348	6.13668994374998	6.63576199706101	6.53725017755713	6.47241086683519	0.31926981637132	0.198497719110279	0.500030759787321
Merged-chr4-101656261-4	chr4	101656168	101656368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175036, exon 3 of 4)	exon (NM_175036, exon 3 of 4)	8485.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	7.91333832590496	7.7343463934829	8.12912697993704	7.94027822253416	7.92977940334979	7.37614734359544	8.04186674629872	7.87336972747126	-0.132066361860873	0.508923771870545	0.773827521189954
Merged-chr11-107466138-4	chr11	107466031	107466231	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	B4|SINE|B4	4589.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	5.20421996001467	4.99562087641801	5.20510825158457	5.2488185048308	5.17728564007555	4.91284208048179	5.26665942625697	4.93216339645633	-0.157123585512396	0.612066868480321	0.832680684364583
Merged-chr15-59389439-4	chr15	59389335	59389535	+	909.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	15237.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	4.41474694808587	4.50064643402385	4.13518471872992	4.25773243578799	4.33801491147767	4.36280496936629	4.55142269531471	4.57011156063508	0.292729130431953	0.440469603400971	0.727884890777928
Merged-chr6-122811884-4	chr6	122811784	122811984	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8300.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	5.55992615549218	5.61162631658355	5.15181346255728	5.56881650640421	5.85488264720289	5.62400518611615	5.58530953627302	5.63523369540652	0.325440935542513	0.242113554340587	0.55277779973084
Merged-chr7-110372700-4	chr7	110372619	110372819	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 19 of 40)	intron (NM_177324, intron 19 of 40)	151016.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	5.41017003353407	5.04377177849525	5.58089029659006	6.0277523056956	5.67049789498646	5.28720816995266	5.52607978460419	5.92180628675677	0.0671663648007002	0.845232404015803	0.941451408856064
Merged-chr5-92509859-3	chr5	92509770	92509970	+	666.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4213.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	3.36784450398109	3.40782909763638	3.91081481691778	3.46109403515411	3.31228298797249	3.54427047632175	3.2942894345302	3.69008313911225	-0.27594409331154	0.607902031304336	0.830283203337722
Merged-chr11-85324102-3	chr11	85323987	85324187	+	983.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016910, intron 1 of 5)	intron (NM_016910, intron 1 of 5)	12833.0	NM_016910	53892.0	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding	4.66495429111682	4.17101020722449	3.74696052351553	4.40749685530113	3.74810842965563	4.04217586677163	4.00340465517737	3.6181948312295	-1.14060498204053	0.0208284143565369	0.131561570660613
Merged-chr8-66341012-3	chr8	66340921	66341121	+	993.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 4 of 7)	intron (NM_175188, intron 4 of 7)	-45280.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	3.89960963971877	4.17281477010975	4.82726528602602	5.17930838781223	3.84481977927436	3.83068474526276	4.15712456735102	4.48197366420411	-1.20827830737803	0.0238097484272617	0.14358672229976
Merged-chr9-88481346-3	chr9	88481209	88481409	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284328, intron 1 of 11)	CpG	1088.0	NM_001311113	56403.0	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	4.41020911805511	4.54797089142013	4.31831297812517	4.43520088643104	4.65014687660723	4.66976977581604	4.51757087198936	4.68770585247402	0.44604180737675	0.206578559575721	0.510575203723748
Merged-chr8-125734222-4	chr8	125734120	125734320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310688)	promoter-TSS (NM_001310688)	17.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	6.06787584212514	6.27794751271099	6.02363713495992	6.17470861662493	6.62806425550021	6.44983639891826	6.35006124353224	6.44572228765514	0.499019909937417	0.0253945188479605	0.150141744088295
Merged-chr4-43556116-4	chr4	43556031	43556231	+	960.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011602, intron 3 of 56)	intron (NM_011602, intron 3 of 56)	6452.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	6.0892993495848	5.66930083104079	6.19725117126414	6.06406404767795	5.6469361738582	5.15762737440227	5.566222193724	5.3486472462449	-0.931845019053985	0.00125860454144788	0.0161824806097758
Merged-chr19-28678125-6	chr19	28678044	28678244	+	914.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045330)	promoter-TSS (NR_045330)	-80.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	3.62498167585653	3.38918177785427	3.77245787396287	3.32527511658048	3.26831866626708	3.45219788438821	3.61020803624866	3.90138950115504	0.140957055125058	0.792945916331245	0.919802981990661
Merged-chr17-66235340-4	chr17	66235245	66235445	+	938.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111825.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	4.37713680742154	4.11589249789341	4.68454300804053	4.63373847830067	4.44820332597316	4.03833567226532	4.44123172063378	4.45890498545455	-0.266907870872053	0.515579900901513	0.777592155234004
Merged-chr2-130411950-4	chr2	130411857	130412057	+	714.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5435.0	NM_025753	66766.0	Mm.174834	NM_025753	ENSMUSG00000049692	Tmem239	4933425O20Rik	transmembrane 239	protein-coding	3.89860822194408	4.24599705781228	3.73080409682454	3.85489940575637	4.37969109270168	4.02115586095008	4.12036889124604	3.89695063595304	0.475584022502236	0.290721429188707	0.603000359025403
Merged-chr8-25990226-6	chr8	25990083	25990283	+	923.288879	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029037, intron 1 of 4)	intron (NM_029037, intron 1 of 4)	3938.0	NM_029037	74653.0	Mm.17631	NM_029037	ENSMUSG00000037251	Pomk	4930444A02Rik|Sgk196	protein-O-mannose kinase	protein-coding	3.95042645536651	4.16599900991142	3.51820724546843	4.01125805785354	4.19717847386088	4.22657359179085	4.33608773953069	4.39188081968309	0.886598896655409	0.0473386115598146	0.224022008657406
Merged-chr2-173022413-4	chr2	173022328	173022528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019547, intron 1 of 3)	CpG	526.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	5.03568087449376	5.32449158074858	5.16845896131135	4.59094402864918	5.33719363867793	5.21158364620899	4.9771694444569	5.19579552741956	0.28232714542612	0.412745647465222	0.707787832411092
Merged-chr7-99139959-6	chr7	99139884	99140084	+	904.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	1160.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	4.1610419128981	3.86590960626209	3.92942672580384	3.675831050235	4.06325689564025	3.94495670158547	4.00990922436445	4.24106046802131	0.452035932139795	0.30331604396782	0.615934402989429
Merged-chr9-72662390-2	chr9	72662290	72662490	+	608.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010890)	promoter-TSS (NM_010890)	59.0	NM_010890	17999.0	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|EG639396|Gm7265|KIAA0093|Nedd4-1|Nedd4a	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	3.38002956713642	3.04092554862669	3.68125710729291	3.29002208245652	3.21542415925971	3.65789162295458	3.25054748381872	3.32096044066087	0.0221221144276603	0.96899878717333	0.988862740113602
Merged-chr15-76477833-2	chr15	76477733	76477933	+	971.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013481)	promoter-TSS (NM_013481)	471.0	NR_138589	15499.0	Mm.347444	NM_008296	ENSMUSG00000022556	Hsf1	AA960185|HSTF|HSTF 1|Hsf1alpha|Hsf1beta	heat shock factor 1	protein-coding	3.80363529557292	4.10889059735524	4.05279606808823	4.00231205328482	3.81759739647387	4.03099868343432	3.73406044707266	4.09463039278888	-0.209146146306703	0.634535173741168	0.845243363558016
Merged-chr13-6647873-4	chr13	6647766	6647966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019703, intron 1 of 21)	intron (NM_019703, intron 1 of 21)	905.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	6.3674836816415	6.31496181547759	6.42166900396747	6.2151698745423	6.58380662419157	6.43214506571377	6.73296646812072	6.25080940643213	0.286436572095283	0.20380414463612	0.506815330714963
Merged-chr10-82083391-5	chr10	82083318	82083518	+	789.609558	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	35291.0	NM_001024626	408062.0	Mm.391409	NM_001024626	ENSMUSG00000061371	Zfp873	-	zinc finger protein 873	protein-coding	3.54928670348041	3.41814300040785	3.43859391523889	3.57508819193353	3.28897410490935	3.61131154150723	3.42576426774621	3.78908394380711	0.115873369075494	0.820929467389225	0.931443689364036
Merged-chr3-98087738-4	chr3	98087649	98087849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 5 of 33)	intron (NM_010928, intron 5 of 33)	-72885.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	5.45696514205464	5.07169432059368	5.08308690095996	5.66258077649289	5.41361683991331	5.3960301142961	5.43049563139104	5.24921522407869	0.0193499853803234	0.950900094696207	0.982481279708254
Merged-chr11-69980695-4	chr11	69980604	69980804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026017)	promoter-TSS (NM_026017)	-374.0	NM_001253700	54351.0	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	7.53439366846197	7.86973830374281	7.30317617316675	7.31076389783914	7.75596769672314	8.00745894462287	7.50770628594787	7.79544121789826	0.334038922319732	0.111426085602002	0.368824281392527
Merged-chr15-63540416-4	chr15	63540333	63540533	+	893.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-60825.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	5.84676138103416	5.29876844226335	6.26768447418349	6.50456932087582	4.57271298639662	4.60749659896775	4.92805268964254	4.72575356816515	-2.46585795888334	7.42600595405939e-11	5.80214794515909e-09
Merged-chr5-65717590-4	chr5	65717492	65717692	+	959.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19736.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	4.52676705441702	4.79010050577881	4.65833140602316	4.93855066346557	4.89714370977344	4.70563264827666	4.92946263031515	5.07522723128926	0.311567125812957	0.365607283773796	0.670295715323899
Merged-chr6-86398216-2	chr6	86398116	86398316	+	959.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1066.0	NM_025823	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	3.48456746710891	3.58306575461587	3.73808928420052	3.18798028666531	3.55544749938768	3.60155619290512	3.29434154973873	3.53780201570488	0.00163367251226512	0.997545047675221	0.999026234737431
Merged-chr15-96655689-4	chr15	96655577	96655777	+	974.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-12764.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	4.91863387041335	5.23869122357785	4.58585718580305	5.23122893707457	5.17514224236169	4.45878979812918	5.21636857090269	5.29468676204104	0.0930580929264556	0.808851744975502	0.92615112212231
Merged-chr4-6469097-3	chr4	6468996	6469196	+	839.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14825.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	3.51673933196839	3.4939566843302	3.77787489143487	3.51287002533905	3.42925113566876	3.89621551021767	3.66466610651502	3.67780238156863	0.299896541721761	0.541472544828504	0.793272720948538
Merged-chr15-58215449-4	chr15	58215358	58215558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026346)	promoter-TSS (NM_026346)	-566.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	6.98451869362889	6.57486994937942	6.72062602910422	6.60854371685689	6.70648907436098	6.77354472084946	6.91419300427812	6.67078461925272	0.0647470083351807	0.759421177036376	0.905638317712331
Merged-chr9-20998511-4	chr9	20998364	20998564	+	956.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4273.0	NM_023167	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	4.28932814795312	4.18721374533882	4.70057143418422	3.79411892596946	4.19418536532481	4.27790501699465	4.22614135442729	4.37243683665377	-0.00543106820271814	0.990316574255613	0.996152503306016
Merged-chr4-9682723-4	chr4	9682646	9682846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13402.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	7.13671626849763	7.39235332296137	7.55421026348326	7.74949135802706	7.4214229553238	7.62999775585323	7.57731550697984	7.49475585838094	0.0523944943549251	0.793972187713826	0.920260968707275
Merged-chr12-82276032-4	chr12	82275931	82276131	+	933.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 3 of 23)	intron (NM_001167983, intron 3 of 23)	-35318.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	4.35284165607253	4.82695888691206	4.73764624658481	4.74825144701217	4.48443401907572	4.67050263494442	4.88570088817013	4.69710901756051	-0.000317906346127446	0.999298632090851	0.999663785554997
Merged-chr17-24781066-3	chr17	24780949	24781149	+	931.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23333.0	NM_029197	75178.0	Mm.52592	NM_029197	ENSMUSG00000024155	Meiob	4930528F23Rik|MLZ-675	meiosis specific with OB domains	protein-coding	5.15340737558953	4.45320830447643	5.29603479349072	4.98365353068919	3.56788853794639	3.89087294445141	3.94243865061364	4.01703021593052	-2.93697749047661	1.23716319205086e-09	7.83452302909149e-08
Merged-chr2-128749754-2	chr2	128749654	128749854	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	B1_Mur3|SINE|Alu	50839.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	3.0872806596874	2.93170610385556	3.0876613688231	3.02069894083953	3.12066746464198	3.19870163066493	3.0766490784418	3.45629915096735	0.734895933764564	0.190341540139918	0.489467980909667
Merged-chr12-79525719-4	chr12	79525619	79525819	+	889.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	228368.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	3.5908462803208	3.41416349269297	4.11015750555307	3.6785270916449	3.88102595584248	3.5865605667463	3.57776684972247	3.98593813134099	0.156449434149097	0.760188675352709	0.90596172057279
Merged-chr8-111941361-1	chr8	111941261	111941461	+	788.0	f0_c57.idr	intron (NM_026693, intron 2 of 3)	intron (NM_026693, intron 2 of 3)	658.0	NM_026693	93739.0	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	3.91293690487833	3.61949953236997	4.01460718165214	4.19806948474801	4.33875306646508	4.13789971761113	3.94860852913495	4.15017792812705	0.492545478832671	0.279402768895566	0.591495502480744
Merged-chr10-16593087-4	chr10	16592986	16593186	+	953.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	502696.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	5.35539119252995	5.20786642426577	5.356311855959	5.63661476587837	5.00065634214968	4.86593428737773	5.24471303521731	4.85539766716501	-0.776683325933977	0.0145840706253002	0.102769979510765
Merged-chr7-35396922-4	chr7	35396793	35396993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178643)	promoter-TSS (NM_178643)	-126.0	NM_178643	101831.0	Mm.389855	NM_178643	ENSMUSG00000030493	Faap24	AW124591|AW538696|C230052I12Rik	Fanconi anemia core complex associated protein 24	protein-coding	7.91604070415943	7.95684616048955	7.94580096610772	8.02921967941843	7.90535967573817	8.03589071205465	8.00216149351351	7.96827624964154	0.0119576417463492	0.938707217136612	0.977759950372676
Merged-chr7-128399704-4	chr7	128399602	128399802	+	818.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 3 of 4)	MTC|LTR|ERVL-MaLR	18470.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	4.24358494086382	4.46345432029021	4.33407236494492	4.2401237977496	4.36780273041846	4.27346014577116	4.13037526955093	4.56769830802402	0.0640630451811708	0.869172837403777	0.950890741040292
Merged-chr1-58720941-4	chr1	58720828	58721028	+	860.1166380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	7642.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	4.67197372749446	4.3994718398016	4.32136756094474	4.22978378505994	4.39622131139266	4.49453692955193	4.34597034710159	4.17643575315075	-0.107149883635646	0.783599869494835	0.91572436110875
Merged-chr5-38516437-1	chr5	38516337	38516537	+	542.0	f0_c57.idr	Intergenic	Intergenic	-14285.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	3.44369622465	3.16659853248168	3.33281186119241	3.22459481971839	3.49312278003945	3.25694246505423	3.43023747057526	3.59262505071681	0.568581306767359	0.272986949059055	0.584406690338791
Merged-chr2-152707740-4	chr2	152707587	152707787	+	933.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159551, exon 13 of 13)	3' UTR (NM_001159551, exon 13 of 13)	20539.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	4.51767312424281	4.75229530677406	4.20139925134141	4.31678401074656	4.5386998289779	4.37723631974894	4.45695124402941	4.80072037417122	0.214995030506137	0.58054257994894	0.815794529409622
Merged-chr2-25372267-4	chr2	25372180	25372380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290407, exon 1 of 6)	5' UTR (NM_001290407, exon 1 of 6)	245.0	NM_001081085	72080.0	Mm.250293	NM_001081085	ENSMUSG00000026955	Sapcd2	2010317E24Rik|6030458L21Rik|AL033337|ang	suppressor APC domain containing 2	protein-coding	6.95681664231222	6.79739095963818	6.80112162231105	6.90624318910313	6.91129519921927	6.552647586571	6.7385119708029	6.51682043287701	-0.236858198482976	0.257176870699905	0.568885340280581
Merged-chr11-120749606-4	chr11	120749516	120749716	+	878.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17595.0	NM_007621	12409.0	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	4.39565663925068	4.50163578639201	4.26806509417689	4.05508059283462	4.44767706897952	4.1992583535959	4.24923033405768	4.21971060616381	-0.0314196677345428	0.937970589206007	0.977460307804652
Merged-chr2-79265834-4	chr2	79265747	79265947	+	741.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010576, intron 2 of 27)	intron (NM_010576, intron 2 of 27)	10421.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	3.97344141345922	3.80809531745633	3.36655019818649	3.54826184544962	4.01815716748017	3.61668317372101	3.81797835763825	4.01479111047439	0.560386082993705	0.258012151569493	0.569823559230946
Merged-chr10-19570955-4	chr10	19570872	19571072	+	955.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-20977.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	4.88519495648882	4.95145278393152	4.77725175436186	4.91018957970873	4.63865426178189	4.98696445914411	4.71673470400224	4.65541573309085	-0.282622619427127	0.396226235174527	0.695104735895268
Merged-chr7-7278300-4	chr7	7278186	7278386	+	973.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003555)	promoter-TSS (NR_003555)	3.0	NR_003555	76229.0	Mm.387947	NM_001113468	ENSMUSG00000095730	Vmn2r29	6430701C03Rik	vomeronasal 2, receptor 29	protein-coding	4.63843788947354	4.77796390943075	5.11911217616763	3.48459169934706	5.43420239881545	5.95849178855257	5.30735869096389	5.80101538860651	1.79506606433228	0.00761991063688276	0.0648699460857167
Merged-chr7-92876788-4	chr7	92876708	92876908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	intron (NM_028243, intron 1 of 8)	1555.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	5.25969246861099	5.51216300404727	5.19374175258928	5.26532171096144	5.69666960676771	5.404500101459	5.71307294917515	5.41010049375939	0.452577248611977	0.110444840780503	0.366978089078026
Merged-chr2-19038365-4	chr2	19038273	19038473	+	942.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40054.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	5.01512365295953	4.69574184115171	4.45979053044907	5.02895309345176	5.24045238242121	4.68930637245818	4.57976307141881	5.24663941890865	0.30390786682037	0.43229836477995	0.722377468409878
Merged-chr4-135018230-4	chr4	135018121	135018321	+	926.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87241.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	4.6280191642571	4.78011086386443	4.94903110741483	4.51354433389688	4.57645700417241	4.76223796497704	4.48114175799079	4.81337148590146	-0.116330366545105	0.74577762225907	0.899723819911497
Merged-chr15-100613829-4	chr15	100613776	100613976	+	979.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045701)	TTS (NR_045701)	1234.0	NR_045701	78445.0	Mm.44383	NR_045701	ENSMUSG00000097093	C330013E15Rik	-	RIKEN cDNA C330013E15 gene	ncRNA	4.92948967293477	4.57991283477717	4.6799851195154	4.27501158422659	4.86299838930936	5.13219504136311	4.65794598111023	4.55274752539675	0.419889056811277	0.272260640834661	0.583764802661998
Merged-chr1-54926421-4	chr1	54926327	54926527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081433)	promoter-TSS (NM_001081433)	-40.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	5.49323689711212	5.58769401629682	5.49418310365707	5.90049616907004	6.01652697537377	5.89545531679387	6.35108458005105	5.8608994853586	0.634429855974703	0.0227470072766605	0.139338143799089
Merged-chr7-44378500-4	chr7	44378402	44378602	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3472.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	5.4281341758219	4.94574163761324	5.58864529582023	5.88120038269648	5.06663803132034	5.45500340489476	5.37336629056856	5.48067558534807	-0.302485250651384	0.372513142492529	0.676285177888533
Merged-chr1-74240361-4	chr1	74240314	74240514	+	708.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	3897.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	3.90308083415084	4.07628752833143	4.33694747962723	4.12554754218923	4.31490363627004	4.287965761137	3.99672005957046	4.52311471673987	0.435395556586775	0.295026526656876	0.607120562632912
Merged-chr9-77910732-4	chr9	77910657	77910857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6608.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	8.89314915954704	9.25627254001121	9.01661300136286	9.1807199591492	9.13537725103312	9.02779110413836	9.40248064546828	9.00040258437843	0.0681467283598762	0.682226418305506	0.869682098720609
Merged-chr3-35931903-3	chr3	35931805	35932005	+	756.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205361, intron 1 of 6)	intron (NM_001205361, intron 1 of 6)	429.0	NM_001205362	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	3.6736317089287	3.27909800969202	3.5636283980167	3.82524443943075	3.89809060858766	3.73750177544751	3.60601036912541	3.91228448885058	0.550809896724861	0.276642964484629	0.588621934327307
Merged-chr11-58092886-6	chr11	58092818	58093018	+	884.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11052.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	3.74483371694575	3.55411680057667	3.69529380925318	3.56465487170132	3.40784930241796	3.70622220645508	3.77699482157493	3.69314690257123	0.0322102635579132	0.946643672449659	0.98095209334417
Merged-chr14-20067509-4	chr14	20067421	20067621	+	900.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15651.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	4.29714082908726	3.94863104155614	4.20437562123301	4.47926712316491	4.33250532479538	4.63598443712781	4.44559315540406	4.38211455059527	0.440353477190979	0.277546301896668	0.589700641340894
Merged-chr8-46921320-3	chr8	46921218	46921418	+	597.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65569.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	2.50939447925649	2.47518055532793	2.7362874762264	2.57658593677967	2.16258516936516	2.25641826446742	2.15201385697288	2.37818148141069	-2.28794131990057	0.00696302420801698	0.060648690663539
Merged-chr5-3421411-4	chr5	3421311	3421511	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 3 of 7)	L1_Mus1|LINE|L1	77518.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	4.94388926296855	4.71751468784823	5.01437619768172	3.74569253415985	4.91508803033626	5.25575156011988	5.41356935643583	5.38881871298434	1.09060220433951	0.0130286889790621	0.0951245310124794
Merged-chr2-167483304-4	chr2	167483222	167483422	+	883.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_170756, exon 3 of 3)	3' UTR (NM_170756, exon 3 of 3)	-9323.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	4.72125649925521	4.54745971927623	4.35322343297334	4.68976740841242	4.85715178611739	4.57376202718824	4.58902783620778	4.3506694248542	0.0545865423976902	0.883854394194022	0.956344438085205
Merged-chr4-120881233-4	chr4	120881141	120881341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 3 of 7)	intron (NM_182929, intron 3 of 7)	26442.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	6.45664716342744	6.51120871258099	6.37070260466751	6.30420142179624	6.55065344268269	6.47274662087757	6.40793482364955	6.29205857950746	0.0496381681891817	0.818525063112604	0.930445174876607
Merged-chr6-50375839-4	chr6	50375745	50375945	+	982.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	6992.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	4.94591316678366	4.85612203907774	4.94672840698658	4.92720525419639	5.29344531701247	5.12189261261685	5.21360886476915	5.23607034651376	0.578417655294485	0.0521646273879012	0.237770620699502
Merged-chr1-78703107-4	chr1	78703026	78703226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033606, intron 12 of 14)	intron (NM_001033606, intron 12 of 14)	44686.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	6.67268563391757	6.57291887314619	7.33221274121914	7.33607826665599	5.40368812255457	5.86923839476985	6.53264938857945	6.27652581296646	-1.37666207216314	2.22115881530687e-05	0.000558854235824417
Merged-chr6-17628433-4	chr6	17628313	17628513	+	844.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8597.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	4.77330570123397	4.10946905138336	4.33183378059543	3.88179865857379	4.5606006535451	4.46183541937494	4.43671720101395	4.03401389778802	0.198992828714872	0.661292244452587	0.859320152400517
Merged-chr12-81862489-2	chr12	81862389	81862589	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 1 of 35)	intron (NM_018814, intron 1 of 35)	2459.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	2.77756878477695	2.5682191965751	2.77799170569597	2.54267910593185	2.42249987855698	2.26955815651457	2.32489319515087	2.47348671134846	-1.69121398980589	0.0280033744953622	0.160100577767501
Merged-chr10-121484340-3	chr10	121484233	121484433	+	928.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-8083.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	3.60567948396078	3.37840360415389	3.32645884175931	3.67963003834054	3.54186971826569	3.43769990347182	3.48783574952824	3.70023975399668	0.095707225800191	0.850886835163245	0.94375183545126
Merged-chr7-18958119-4	chr7	18958007	18958207	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001029877, exon 4 of 4)	exon (NM_001029877, exon 4 of 4)	-29417.0	NM_194064	378430.0	Mm.277153	NM_194064	ENSMUSG00000051965	Nanos2	nos2	nanos C2HC-type zinc finger 2	protein-coding	5.81945203569509	5.41457245953609	5.52623862334665	5.8479808948181	5.29596403094737	5.87920087166053	5.49842751693873	5.1760558756778	-0.325647417862793	0.290113481823393	0.602251152668784
Merged-chr15-79348288-4	chr15	79348180	79348380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304832)	promoter-TSS (NM_001304832)	-122.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	8.00026322250788	8.50536689207383	7.83433159270018	7.48606010928972	8.22598470205916	8.41447997713593	8.0736220216903	7.71511969771856	0.159462357488881	0.521928217745662	0.78174030512557
Merged-chr7-97027058-4	chr7	97026958	97027158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153591, intron 7 of 13)	intron (NM_153591, intron 7 of 13)	-54693.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	7.15801408183258	7.39186423301873	7.63640830370139	7.17681742588119	7.0835118028533	7.35947391064815	6.88149226563656	7.41535341333726	-0.204330813639952	0.347201113084294	0.65535995064671
Merged-chr7-99434975-4	chr7	99434850	99435050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362168, intron 4 of 17)	intron (NM_001362168, intron 4 of 17)	-31054.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	6.5604577977909	5.88346627285238	6.09576336095398	6.41989416011731	5.8752365452953	6.16352424651827	6.06456396086655	6.04892826868193	-0.36421740576924	0.163943801935307	0.453848626242734
Merged-chr5-135551787-4	chr5	135551709	135551909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-6687.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	6.35926670279814	6.69368130958353	6.19540350821837	6.12832969123769	5.99089018336036	6.24866817061514	5.88098766178236	6.0237608626078	-0.487687145006711	0.056558065612742	0.24907902064774
Merged-chr10-14133103-4	chr10	14133015	14133215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 5 of 9)	intron (NM_001358782, intron 5 of 9)	166736.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	6.49469647339123	6.78988016520464	6.39200118217611	6.42776975841038	6.63831758327617	6.6716698871245	6.28537906504333	6.17175072030813	-0.101323126864759	0.672928592557535	0.865482252311093
Merged-chr8-72723894-3	chr8	72723800	72724000	+	907.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113248, intron 1 of 6)	CpG	630.0	NM_009188	20467.0	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	3.32790429775578	3.34672886584042	3.57532343792732	3.38934242952073	3.0332766550398	3.26119129547897	3.20165785789206	3.14988291949528	-0.98101055740195	0.0750601539090612	0.295650860223179
Merged-chr11-113444458-1	chr11	113444358	113444558	+	618.333313	f0_balb.idr	intron (NM_027216, intron 5 of 9)	intron (NM_027216, intron 5 of 9)	121357.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	2.63237970140791	2.74074880758692	2.80756401388243	3.06746844100772	2.17680436506821	2.29517207834185	2.42392128677169	2.27633603898793	-4.25546532227814	0.000105511137234096	0.00212451972763388
Merged-chr19-37439457-3	chr19	37439362	37439562	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008245, intron 3 of 3)	intron (NM_008245, intron 3 of 3)	4621.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	5.22765381890859	4.95095926662101	5.39714206360594	5.26661319246457	4.39293770698069	3.82185894961338	3.89735643672796	4.27350284261477	-2.44251435691635	6.05651574457842e-08	2.71813829876007e-06
Merged-chr10-77565970-4	chr10	77565869	77566069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008404)	TTS (NM_008404)	-15686.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	5.56998601632617	6.41159057576849	5.47589177964497	5.7278854146936	6.19113792483697	6.34572394027385	6.31612311363866	6.10779150797752	0.598517094294948	0.0442360218561425	0.21450206415276
Merged-chr11-120350348-4	chr11	120350245	120350445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038126, intron 1 of 1)	CpG	1667.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	7.23818098917714	7.24801763474773	7.19538412159839	6.84825382999677	7.16981977694209	7.24295941538459	7.43836713964445	7.44304373423788	0.266387745601403	0.184871141006004	0.482566571028884
Merged-chr19-40831296-4	chr19	40831224	40831424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172839)	promoter-TSS (NM_172839)	45.0	NM_172839	240665.0	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	6.16125120142293	5.97160307965762	6.41652444621706	5.87550412435485	5.54087253478245	5.99509899637423	5.90590351604645	5.71146864949195	-0.510129039315305	0.061771890555115	0.262954452354676
Merged-chr14-122406757-3	chr14	122406661	122406861	+	848.4111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033326, intron 1 of 3)	CpG	44354.0	NR_033325	328479.0	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA	3.71614479237777	3.66218784172717	3.81430360137387	3.62662653957988	3.69677083797612	3.78260047778842	3.59702504717909	3.49424502779897	-0.162052247581933	0.730429779969443	0.893090463084171
Merged-chr13-33931799-4	chr13	33931728	33931928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243192, intron 2 of 7)	intron (NM_001243192, intron 2 of 7)	-4204.0	NR_040707	68808.0	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	5.98292403808409	5.59930731077668	6.02580152396896	6.33004175632524	5.62637550730302	5.9268636939326	5.7223119322341	6.00079167143556	-0.33141926553777	0.243500163378298	0.554586324098925
Merged-chr7-43579530-4	chr7	43579390	43579590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172482)	promoter-TSS (NM_172482)	-96.0	NM_172482	210105.0	Mm.234422	NM_172482	ENSMUSG00000030469	Zfp719	8030458J18|9430094P17Rik|C630016O21Rik|mszf6	zinc finger protein 719	protein-coding	7.96143265899287	8.33028604550244	7.96275065186987	8.01669629368184	8.30534931461421	8.24299132673561	8.13363765901508	8.13021883042008	0.165431169775856	0.32952768045986	0.640859310586131
Merged-chr13-62470137-3	chr13	62470030	62470230	+	879.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3318.0	NM_001136496	71508.0	Mm.442497	NM_178875	ENSMUSG00000113450	Zfp935	8430426H19Rik|Es113	zinc finger protein 935	protein-coding	3.32393847414758	3.2734717257683	3.18777960027758	3.30058181462172	3.7784851495051	3.97671841136829	3.49274019919178	3.89356701171142	1.6754505908619	0.000995650398182453	0.0133968619456009
Merged-chr6-52672796-4	chr6	52672706	52672906	+	987.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER45B|DNA|hAT-Tip100	-32506.0	NM_145567	58875.0	Mm.286458	NM_145567	ENSMUSG00000029776	Hibadh	6430402H10Rik|AI265272	3-hydroxyisobutyrate dehydrogenase	protein-coding	5.79322641970532	6.05711808209138	5.81791261380506	5.61899438009415	6.03179368913571	5.99260357507688	5.74073394755202	5.07449637249494	-0.0941252502420576	0.766197012349171	0.90854344115151
Merged-chr11-100702679-4	chr11	100702516	100702716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030150, intron 4 of 12)	B2_Mm2|SINE|B2	1655.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	6.65612683680688	6.97065392309829	6.40848970115017	5.96816775241941	6.87782470228942	6.89225916644624	6.09060379023602	6.86001264988111	0.252570387100886	0.400634626337007	0.698394798671281
Merged-chr8-3481846-4	chr8	3481719	3481919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029598, intron 4 of 8)	RLTR12A|LTR|ERVK	10957.0	NM_029598	76406.0	Mm.74996	NM_029598	ENSMUSG00000040340	Tex45	1700019B03Rik	testis expressed 45	protein-coding	5.92501413752585	6.00360569388493	5.24585009811451	5.72723799213193	5.83504315421346	5.62283827531932	5.7864810879562	5.5011896228078	-0.0986484620852436	0.736132283706734	0.895884000208244
Merged-chr6-50978753-4	chr6	50978655	50978855	+	944.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	202640.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	4.65493332923848	4.27663303507077	4.30044234050893	4.04425661040475	4.14353858137914	4.06170894627191	4.59829984433731	4.68639753884279	0.168317512346238	0.698334287861706	0.878303994693932
Merged-chr2-156257337-4	chr2	156257245	156257445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 4 of 17)	intron (NM_172674, intron 4 of 17)	-55128.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	6.12914619041996	6.74051779494446	6.54402880504544	5.27051455371143	6.25109445913445	6.4045175000949	5.87739174769809	5.74892386728893	-0.277655632883102	0.442997270646014	0.729656432426533
Merged-chr12-85397323-4	chr12	85397244	85397444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22627.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	5.03469099944819	5.04792173951325	5.06721833547009	5.05796558153159	4.76210134542616	4.88446149461349	4.51097149627353	4.89694039842283	-0.568336409527928	0.0813053982929869	0.309417833291006
Merged-chr1-64118927-4	chr1	64118833	64119033	+	973.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	2456.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	4.71211132352839	4.5856852293517	5.19215705710427	4.83436196196966	5.05671841258907	5.00644846211089	4.91685306715676	5.03754035994237	0.319169616321789	0.340700580623603	0.649787696691071
Merged-chr7-27197950-2	chr7	27197850	27198050	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290513, intron 2 of 7)	intron (NM_001290513, intron 2 of 7)	-1679.0	NM_001285825	53607.0	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	2.43454010554462	2.38090989189711	2.64849537353808	2.60239570047858	2.59832066289896	2.99951554705239	2.8207818264917	2.7113922968111	1.27969704385906	0.0645546304915353	0.270044689525581
Merged-chr10-8416291-3	chr10	8416205	8416405	+	861.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	102520.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	3.91616348116662	3.85478115206197	4.1033224262787	4.14751342819527	4.17723696159976	3.81668964092625	3.85003929981554	3.86331561217658	-0.194327645011691	0.663315175548198	0.860482180927763
Merged-chr2-145957568-1	chr2	145957468	145957668	+	721.666687	f1_c57bl6.idr	intron (NM_175280, intron 6 of 6)	intron (NM_175280, intron 6 of 6)	22784.0	NM_175280	78774.0	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding	3.07234302330174	2.90812556865576	2.95373314482743	2.63823225341829	2.96401426583703	3.18508579251541	3.06036609965548	2.82163800658205	0.51426746862196	0.407228122934331	0.703586879884121
Merged-chr13-103807558-3	chr13	103807433	103807633	+	787.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-32925.0	NM_001361085	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	3.60641748326287	3.1657743104354	3.7477900767329	3.33522782802692	3.27840633638323	3.56490638135047	3.43494354315587	3.44660993934949	-0.148514969256088	0.783239431843118	0.915543650652149
Merged-chr8-41245298-4	chr8	41245203	41245403	+	922.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 1 of 37)	RMER6B|LTR|ERVK	5544.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	4.46356668078468	4.50173158457471	4.59167234980427	4.8958250007281	4.52300006898056	4.50175566694783	4.52983933738155	4.9691348595823	0.00254060440238785	0.994671047811517	0.99809702625617
Merged-chr19-34194637-4	chr19	34194563	34194763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	(CA)n|Simple_repeat|Simple_repeat	1729.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	5.94472183684115	5.58389205297746	5.83664610199102	5.78443465588468	5.68591853126277	5.81426851002486	5.7368125644228	5.66130957253812	-0.110064840886636	0.666487116043974	0.862000851460164
Merged-chr5-72551410-4	chr5	72551307	72551507	+	978.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153351, intron 4 of 21)	intron (NR_153351, intron 4 of 21)	8238.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	6.06095948464091	6.66598722686639	6.42063098728763	6.11094307520375	5.97793229971078	5.8844968145255	5.50114827284456	5.32196147029102	-0.985919640964145	0.000927399047693657	0.0126608692842484
Merged-chr3-8729075-4	chr3	8728924	8729124	+	978.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61986.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	4.74572594285328	4.403856020501	4.48334425691867	4.74221332128489	4.48413608520691	4.16533128415017	4.42093209596437	4.59991149253688	-0.40309363434949	0.289324210206752	0.601308522016326
Merged-chr16-17125161-4	chr16	17125007	17125207	+	939.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358255)	promoter-TSS (NM_001358255)	95.0	NM_183287	70458.0	Mm.234165	NM_183287	ENSMUSG00000049916	2610318N02Rik	AL033325	RIKEN cDNA 2610318N02 gene	protein-coding	4.93484707833665	4.68133225151175	4.77221427142618	4.87153658777596	4.45099335625816	4.22672998300157	4.43657848393562	4.49757316314748	-0.906137640995283	0.0118860814840378	0.0893011815444721
Merged-chr11-63925481-4	chr11	63925379	63925579	+	961.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3195.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	4.89702208097924	4.67845836977648	4.42416287707108	4.53485806705612	5.18096066179252	4.88183185329091	5.41773877676696	5.21221677381735	1.09451453037798	0.00117075284808012	0.0152708478969205
Merged-chr7-129339419-4	chr7	129339312	129339512	+	880.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080963, intron 5 of 6)	intron (NM_001080963, intron 5 of 6)	82318.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	4.03409891342401	3.55169775071231	3.62159788127627	4.1805702117147	3.46792552038182	4.01729434785439	4.05932521528612	3.94072745197276	0.0118586671676072	0.981837732684891	0.993492379943959
Merged-chr19-26506994-4	chr19	26506906	26507106	+	894.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-98154.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	4.31133865053878	4.00536667834907	4.26448096784274	4.48338934171195	4.83039289533321	4.34305170332214	4.6868881121394	4.59999785320921	0.775849215446513	0.050749408906664	0.233563440874657
Merged-chr2-22773678-4	chr2	22773556	22773756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019456)	promoter-TSS (NM_019456)	-671.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	6.78911856508811	6.87435197718608	6.74688084305056	7.1296239312115	6.68903897012723	6.86343893160386	6.76990350252001	6.77118806306069	-0.196951441905154	0.342383460222449	0.651392231825163
Merged-chr12-98777629-3	chr12	98777539	98777739	+	770.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008506, intron 10 of 14)	L2|LINE|L2	6617.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	3.96230700264969	4.08059908235968	4.34450755307804	4.15001921566818	3.44898023358766	4.18352239514358	3.89606120608864	3.62532390907091	-0.920364617513466	0.0606422731836576	0.260152866618826
Merged-chr2-164787206-4	chr2	164787106	164787306	+	892.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133924, intron 2 of 2)	MIR|SINE|MIR	1185.0	NM_133924	101113.0	Mm.295647	NM_133924	ENSMUSG00000050373	Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding	4.64850532979714	3.91033686818782	4.54481982764888	4.71885017375571	4.05581531673323	3.95951721330665	4.1486410491043	4.25813809050497	-0.947514043478388	0.0332799386720289	0.179253329908161
Merged-chr13-119409310-8	chr13	119409149	119409349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008710)	promoter-TSS (NM_008710)	8.0	NM_001308506	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	6.09090870677658	5.98401463734152	6.40040038171829	5.87922384493465	5.96374325681706	6.26710430111636	5.95414498825188	6.04582903919883	-0.0472730325579201	0.852667486781806	0.944604243807489
Merged-chr14-51166290-4	chr14	51166192	51166392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4032.0	NM_019398	54159.0	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	5.59321243220192	6.01372386807476	5.75481250069479	5.93233042316801	6.09624752738019	5.90522321478128	5.79851531210575	5.6994638519604	0.0778800797439368	0.767545271763206	0.909027746453384
Merged-chr14-54776333-4	chr14	54776211	54776411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	5575.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	5.65436215202201	6.1248965347693	5.57217870681637	6.14986655368798	5.65122205577118	6.00512681113611	5.51550283020871	5.70389320440588	-0.313329730485642	0.280605293865616	0.592676682850464
Merged-chr10-80073873-3	chr10	80073789	80073989	+	917.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 4 of 31)	intron (NM_001359635, intron 4 of 31)	1550.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	3.66727874831444	3.71712160659558	4.20333439479781	3.68417708664287	3.69462947189627	3.60676428230645	3.65343989734145	3.8220789453291	-0.394692730435172	0.416089114940913	0.710072021761014
Merged-chr1-165613901-2	chr1	165613801	165614001	+	618.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	20640.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	3.54143390627575	3.21756853042105	3.27151469384572	3.50351462591974	3.51448926638827	3.11421550651707	3.47780608813555	3.26991408516884	-0.121028236009762	0.825621572819458	0.933134099875256
Merged-chr1-67477318-3	chr1	67477213	67477413	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	354286.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	3.80985956147131	3.6733368334336	4.05906702734783	4.3038565283688	3.9793367338892	3.87411795903177	3.79551120983536	4.22520802445733	-0.0557792423792735	0.907080926109291	0.96558958573166
Merged-chr11-116198337-1	chr11	116198237	116198437	+	663.5	f0_balb.idr	promoter-TSS (NM_027107)	promoter-TSS (NM_027107)	-518.0	NM_027107	69535.0	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	3.3286316512485	3.15704347504181	3.43152060050951	3.27480050259683	3.15397358360504	3.26926474152456	2.8819073710056	3.21599161428229	-0.618055989796554	0.279481074835615	0.591495502480744
Merged-chr1-52734368-3	chr1	52734262	52734462	+	984.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-7004.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	4.05763242811369	5.04254428281522	4.53271783482812	4.27531812975387	3.64310154834625	3.95884215271185	3.81777401931834	4.20306373809283	-1.55455099381237	0.00166295733816495	0.0202476292119813
Merged-chr10-40129384-3	chr10	40129297	40129497	+	953.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	12857.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	4.7460599530914	4.27830612101053	4.12175251933199	4.41047273925226	4.30307850598832	3.90152037453807	4.10449467281708	4.43105193666083	-0.490196456787457	0.255269128269892	0.566852976271238
Merged-chr2-72842037-4	chr2	72841924	72842124	+	901.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28307.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	3.75821349000733	3.99481075048206	3.81196816430152	3.73285075639406	4.25331225162258	3.98340422939247	4.03192245589317	3.52358811051298	0.445919453936323	0.351042301835401	0.658536225452443
Merged-chr12-55488897-4	chr12	55488791	55488991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010907)	TTS (NM_010907)	3756.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	8.10436457481834	7.87062941694599	8.5207181000064	8.46005582116519	7.83433644321292	7.92813379254315	8.09823008850028	7.87245753724301	-0.42811463872756	0.0312384045552716	0.172019062187813
Merged-chr18-69576517-4	chr18	69576412	69576612	+	975.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	230352.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	4.89067015229013	4.73087546952269	4.75222405173971	4.87021730005291	4.56284562094898	4.72838813364556	4.44486840025678	4.633684260006	-0.478269251030892	0.162316643224045	0.451486375460895
Merged-chr9-47628757-4	chr9	47628655	47628855	+	859.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	98403.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	4.82156504928874	4.54222199276427	4.2149388723264	4.1295291116171	4.42663194016298	4.29264331957221	4.33356039633254	4.1115494723108	-0.342884415109211	0.417760709513831	0.711469226750822
Merged-chr2-181219955-6	chr2	181219773	181219973	+	874.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199312)	promoter-TSS (NM_199312)	-143.0	NM_199312	332713.0	Mm.23349	NM_199312	ENSMUSG00000047841	Fndc11	1700026M20Rik	fibronectin type III domain containing 11	protein-coding	3.01692067401964	3.19872330787584	3.13295370526223	3.12255067188695	3.02313482718021	2.99687658090666	2.7432306619619	3.01580466780658	-0.708636872430985	0.23713988106681	0.547299026968193
Merged-chr12-79171746-4	chr12	79171657	79171857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016800, intron 1 of 5)	intron (NM_016800, intron 1 of 5)	701.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	6.12545289084319	5.63586129829589	5.91705313270322	5.5889094228337	5.57848476896972	5.52844940794452	5.44611604854673	5.24493775589051	-0.60874409241093	0.0363531554069688	0.189608063949046
Merged-chr1-155065450-4	chr1	155065323	155065523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 4 of 6)	L2b|LINE|L2	17841.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	6.61634066143175	6.79914898649459	6.50089017378765	7.13695394963553	6.56954076674636	6.29762606765496	6.87870427119735	6.87063117404556	-0.180978465261192	0.472225642900192	0.750447623040696
Merged-chr19-44281926-2	chr19	44281826	44282026	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-11750.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	3.03872932879057	3.50464157134356	3.15481744741811	2.58904850003166	2.8036034705875	2.88291350814734	3.02729401513956	2.8429193472391	-0.927185473904936	0.178286899127264	0.474070717868282
Merged-chr12-103036845-3	chr12	103036746	103036946	+	796.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081017, intron 7 of 48)	L1MEc|LINE|L1	87987.0	NM_001081017	217843.0	Mm.387073	NM_177621	ENSMUSG00000021198	Unc79	9030205A07Rik|Mlca3	unc-79 homolog (C. elegans)	protein-coding	3.67096213505088	3.38716157717963	3.92986219748151	3.42604311799727	3.32626437459995	3.46193781082991	3.33466554186327	3.21642776119246	-0.948473909134346	0.0812868577250157	0.309417833291006
Merged-chr7-98311582-3	chr7	98311502	98311702	+	668.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360615, intron 1 of 10)	B4|SINE|B4	-2060.0	NM_025408	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	3.21441901741377	2.9453253106165	3.21487495027859	3.02958704682011	3.1104323076739	2.88095504707289	2.97191875556528	3.15871673185097	-0.252598715973487	0.666651662780785	0.862087261654175
Merged-chr5-114826404-4	chr5	114826298	114826498	+	902.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2930.0	NM_181075	330173.0	Mm.482205	NM_181075	ENSMUSG00000092486	2610524H06Rik	-	RIKEN cDNA 2610524H06 gene	protein-coding	4.14149161445224	4.05235173576964	3.94775886294789	4.03182005350905	4.10230016421593	4.17227825284696	3.98259906822626	4.30798974733279	0.261669235375786	0.521407827000116	0.781404854166528
Merged-chr7-4225354-4	chr7	4225252	4225452	+	751.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-12402.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	3.47383351537446	3.3066982029457	3.41575653740214	3.53773228253495	3.72216348996769	3.80261090870405	3.40381687020188	3.82029570046973	0.818588512434578	0.101799473293839	0.350149062993244
Merged-chr9-108306174-4	chr9	108306072	108306272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313961)	promoter-TSS (NM_001313961)	12.0	NM_016802	11848.0	Mm.757	NM_016802	ENSMUSG00000007815	Rhoa	Arha|Arha1|Arha2	ras homolog family member A	protein-coding	8.51748323474953	8.82676123091744	8.32159566481834	8.29790275839794	8.78569142914529	9.12331255322754	8.54194788058638	8.62186257608995	0.350893052522338	0.077832933005858	0.301672031305638
Merged-chr4-32768233-4	chr4	32768109	32768309	+	904.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081392, intron 96 of 101)	(TG)n|Simple_repeat|Simple_repeat	-32050.0	NM_175364	108755.0	Mm.1182	NM_175364	ENSMUSG00000045854	Lyrm2	2610208E05Rik	LYR motif containing 2	protein-coding	4.82072260167721	4.77760297513313	5.67851976293361	5.55492530312447	4.5960367002637	4.69697179816518	4.67557685490154	5.00190770852577	-1.03403835969814	0.00830805967458138	0.0689390743270026
Merged-chr19-3084238-2	chr19	3084138	3084338	+	925.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	113465.0	NR_045304	70011.0	Mm.393871	NR_045304	ENSMUSG00000100969	1700030N03Rik	1700087C08Rik	RIKEN cDNA 1700030N03 gene	ncRNA	3.29575950892895	3.12203087990245	3.13239990301436	2.91772399924586	3.25234121276618	2.90975379221102	3.06188865109664	3.13075881930649	-0.0571463003989006	0.922547411430683	0.971307305090866
Merged-chr6-125573396-4	chr6	125573290	125573490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 6 of 51)	intron (NM_011708, intron 6 of 51)	20442.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	6.81514491051953	7.10793961223537	6.41354577369283	6.65173103250387	6.98425757387258	6.73441253303727	6.87428484533374	6.63417988281389	0.0678689158722427	0.770450077967237	0.910205246466887
Merged-chr2-75590347-4	chr2	75590241	75590441	+	964.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68918.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	4.83875531451321	5.17475630842929	4.91287191676029	4.85028322249494	4.91887767034308	4.93738935647922	5.02323282800961	4.7981119528443	-0.0516025812036718	0.87309236685279	0.952427521124774
Merged-chr14-50834675-3	chr14	50834566	50834766	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 41 of 54)	RLTR12B|LTR|ERVK	26750.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	5.17644729426659	5.02990390222959	5.14403466451656	4.90058189902543	5.32254851090201	5.47616235720535	5.33374405220093	5.65838833208332	0.728977704129688	0.0134539515998993	0.0973210183871172
Merged-chr6-38353431-2	chr6	38353331	38353531	+	992.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 1 of 8)	intron (NM_028864, intron 1 of 8)	1172.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	3.14050076116675	3.29839258493347	3.2049200862139	2.8445627883925	3.2613755910283	3.49745836261245	3.31118472407408	3.67030548733731	1.17174653426027	0.0382068854642693	0.195903176808905
Merged-chr15-25891755-4	chr15	25891666	25891866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 2 of 8)	ID_B1|SINE|B4	-41786.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	6.66595764735974	6.54177257102746	6.92911207950785	7.16553195062368	6.50294507563978	6.30043633052232	6.94256538606772	6.69265991332762	-0.325896244232533	0.194261489700566	0.494661933916791
Merged-chr4-110351716-4	chr4	110351605	110351805	+	899.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163397, intron 1 of 5)	CpG	206.0	NM_001163397	15572.0	Mm.3970	NM_010488	ENSMUSG00000028546	Elavl4	Elav|Hud|PNEM	ELAV like RNA binding protein 4	protein-coding	3.74656224767013	3.97215894617484	4.15667696924268	4.1255670754064	3.2675626372702	3.6314918921243	3.50097777358086	3.94309900095857	-1.23646009025421	0.0173424401440839	0.116224230017489
Merged-chr11-68865969-4	chr11	68865873	68866073	+	898.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12842.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	4.77674262879272	4.66134617260688	4.81285123014125	4.5194140314998	4.97032456480412	4.48749422831479	4.60414563095431	4.62249730510489	0.0297348932598057	0.934512607415018	0.976356212091203
Merged-chr11-30183922-4	chr11	30183769	30183969	+	808.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175836, intron 1 of 34)	intron (NM_175836, intron 1 of 34)	14388.0	NM_009260	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	3.60618274918394	3.46781881120773	4.00099845954674	3.61855066260698	3.3255324141601	3.43449785889882	3.37041918052552	3.31843093042365	-1.09306442851821	0.0378874538943314	0.194700099685554
Merged-chr12-85123250-4	chr12	85123147	85123347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030225, intron 9 of 14)	intron (NM_030225, intron 9 of 14)	12414.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	6.31509377852223	6.18559164489636	6.43296156385777	6.68565445706959	5.62355436514997	5.6975959364057	6.17472445250909	5.80194054679391	-0.918948080105289	0.000543746235285226	0.00825934982530241
Merged-chr14-30695786-4	chr14	30695696	30695896	+	924.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19053.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	4.77402352719915	5.03735197533622	4.66303020574119	4.82685654061886	4.61276053307097	4.33142532836127	4.47779989356845	4.69833810615351	-0.637005577768031	0.0756919829151528	0.297169313398658
Merged-chr10-128058473-2	chr10	128058373	128058573	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019766)	promoter-TSS (NM_019766)	-509.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	3.47186459687326	3.24694244130158	3.57433315920029	3.36514670487252	3.46553675552674	3.47506035017102	3.29074979816835	3.35980023002318	-0.0430282515606253	0.933362528471509	0.975967471696899
Merged-chr5-113830463-4	chr5	113830365	113830565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009151)	promoter-TSS (NM_009151)	36.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	5.8998945606698	6.08502518686433	5.32189151008125	5.62631738765349	5.92141605185311	5.91114162143481	5.62876788723661	6.02294626265368	0.190649000167988	0.507507086678936	0.772818324085317
Merged-chr6-116712268-4	chr6	116712162	116712362	+	847.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178768, intron 1 of 4)	intron (NM_178768, intron 1 of 4)	4496.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	3.05941755713388	3.57644905556153	3.3245837816416	3.62259709867666	3.66015307967944	3.43684469357132	3.47938481326417	3.32295694351767	0.198729951939983	0.72399673658991	0.889931673933299
Merged-chr9-45464399-4	chr9	45464293	45464493	+	957.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-33161.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	4.82424049369489	4.7722125085429	4.95598371812236	5.08975948547333	5.82314864538213	5.96384292886016	5.97879380538371	5.98742696274734	1.72606333945088	3.87287427742538e-09	2.22851510261003e-07
Merged-chr12-25101231-4	chr12	25101134	25101334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5142.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	7.68534428529394	7.62301825909116	7.85920505098631	7.7160755443571	7.35847377851224	7.29356935405195	7.37163754323308	7.49989277549021	-0.449636577237298	0.00904449996477582	0.073381792202528
Merged-chr7-44970321-4	chr7	44970203	44970403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357670, intron 6 of 18)	intron (NM_001357670, intron 6 of 18)	4548.0	NM_001357670	78070.0	Mm.231465	NM_153679	ENSMUSG00000007783	Cpt1c	6530437J22Rik|9630004I06Rik|CPT I-C|CPT IC|CPT1-B|CPTI-B	carnitine palmitoyltransferase 1c	protein-coding	7.49223312083674	7.5363074222273	7.2925949534594	7.18747527713578	7.20980331260729	7.29175661819956	7.23529947748618	6.5827733482866	-0.364039900124461	0.103864306190206	0.354204553962854
Merged-chr18-12168638-4	chr18	12168536	12168736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029623)	promoter-TSS (NM_029623)	-94.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	8.48508112650024	8.44124367181166	8.39092480761947	8.20076784352799	8.43120468921408	8.38910499190024	8.23150772659279	8.13784552795788	-0.092187399316773	0.574864447820045	0.812628374305066
Merged-chr11-100725091-4	chr11	100724998	100725198	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	11248.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	4.07395276553297	4.51018363671721	4.34650096003547	4.08308493365839	4.45802659126018	4.03690318386155	4.32643143947749	3.85369010655455	-0.1508683030396	0.733040414261244	0.894346748370804
Merged-chr4-58506153-4	chr4	58506044	58506244	+	845.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010336, intron 1 of 3)	PB1D11|SINE|Alu	-6741.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	3.64430211715826	3.6825519236349	3.70669455188688	3.95643496747852	4.61501775860051	3.94514284167662	4.144139883482	4.20263018360061	1.2929349484614	0.00612879118511184	0.0551227227400904
Merged-chr4-53410902-4	chr4	53410803	53411003	+	869.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29510.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	4.95260063639742	4.52824220533372	4.41369943306117	5.13552258897463	4.89305183641207	5.02111652108717	4.92934028333198	5.13853055638512	0.364782353455473	0.327526833113949	0.639011622936083
Merged-chr2-174344312-4	chr2	174344241	174344441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077507, intron 5 of 10)	intron (NM_001077507, intron 5 of 10)	14252.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	6.71547242180259	6.47897344861261	6.61230061927454	6.33163915901603	6.69687856561731	6.84864183280903	6.41339154452347	6.65334567943398	0.193288801758385	0.385334284737242	0.686726426145025
Merged-chr2-120544945-4	chr2	120544870	120545070	+	917.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011743, intron 3 of 21)	Lx7|LINE|L1	18889.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	5.08118940624929	4.40496230092805	4.55744163420438	5.15364736300918	4.58722101097542	4.50312086379468	4.53676270215979	4.86066030425755	-0.467197875693496	0.237800431376255	0.548010389643877
Merged-chr8-106936817-3	chr8	106936658	106936858	+	820.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	1008.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	2.55691254982283	2.81554000153232	2.62728892177006	2.59903386167798	2.56573198777541	2.80056988995477	2.74727842419213	2.92897074989368	0.534675185195254	0.412711865567567	0.707787832411092
Merged-chr11-22815417-4	chr11	22815318	22815518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	44317.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	5.7155713988035	5.67227489593763	5.4524376075969	5.66503996779353	5.67924121171392	5.40728066564084	5.5098971466213	5.56089517940705	-0.139749479754785	0.601133424633237	0.827071740947179
Merged-chr7-118703233-4	chr7	118703120	118703320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019580, intron 1 of 5)	intron (NM_019580, intron 1 of 5)	2518.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	8.12247493730817	8.17267424606754	7.97769851752967	8.28102081893158	8.704017814991	8.83819903788844	8.69483692169578	8.62856152833525	0.715648205516004	5.01280452733017e-06	0.000148236981076375
Merged-chr2-27009998-4	chr2	27009919	27010119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029862)	promoter-TSS (NM_029862)	93.0	NM_001243239	381356.0	Mm.150270	NM_029862	ENSMUSG00000015488	Cacfd1	5930434B04Rik|mFwe	calcium channel flower domain containing 1	protein-coding	6.90199604163497	7.0387106701218	7.1639262223203	6.60451294668871	6.76493153850262	6.98417674811749	6.72957149409468	6.89831505541126	-0.119807314286868	0.585489657041062	0.818172766912737
Merged-chr3-85574650-4	chr3	85574536	85574736	+	833.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144896, intron 1 of 12)	intron (NM_144896, intron 1 of 12)	507.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	3.80412703831684	4.02429912031694	4.15989701998252	3.57662614515739	4.10045060645361	4.33137960291466	3.95197728596951	4.43484272830876	0.83798966068889	0.0653207098192821	0.272057507561538
Merged-chr14-77795439-4	chr14	77795334	77795534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033440, intron 2 of 2)	intron (NM_001033440, intron 2 of 2)	3534.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	7.49363125556747	7.28983881104399	7.44677176759512	7.47975325547095	7.73416959144756	8.08619496800369	7.64954201951425	7.49914296727254	0.432134387408224	0.0254294336014605	0.150242343284202
Merged-chr7-110930619-4	chr7	110930529	110930729	+	800.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194464, intron 2 of 20)	intron (NM_194464, intron 2 of 20)	15558.0	NM_010826	17540.0	Mm.250023	NM_010826	ENSMUSG00000005611	Mrvi1	BB115629|Irag|Ris1	MRV integration site 1	protein-coding	3.69068088180234	3.85917978010109	3.63470972348325	3.58472361685048	3.82224652312221	3.91757692158718	3.78154677411378	4.0268644142276	0.579131738039294	0.197955132725095	0.499317778526509
Merged-chr6-6248626-3	chr6	6248517	6248717	+	985.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_136906)	promoter-TSS (NR_136906)	-42.0	NR_136906	101056138.0	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	4.75570033762037	4.61459907509923	5.28436988513836	5.42592549021805	4.30260872060904	4.48726140610299	4.38601232385677	4.96553193422655	-1.06645624387239	0.0101753159867484	0.07990609186019
Merged-chr10-41809642-4	chr10	41809547	41809747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243075)	promoter-TSS (NM_001243075)	16.0	NM_001243075	103268.0	Mm.338605	NM_026643	ENSMUSG00000019813	Cep57l1	2410017P07Rik|4930484D11Rik|AI607327|cep57R	centrosomal protein 57-like 1	protein-coding	5.72853980071392	5.96761170478056	5.56506356354261	5.72542852680329	6.10594448470385	5.7433674208948	6.26653753908418	5.69952514311472	0.364733271925364	0.181604002793026	0.47824687501256
Merged-chr12-84316940-5	chr12	84316857	84317057	+	889.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045546)	promoter-TSS (NR_045546)	98.0	NM_001252583	52708.0	Mm.255150	NM_144833	ENSMUSG00000042472	Zfp410	Apa1|D12Ertd748e|Znf410	zinc finger protein 410	protein-coding	4.88863384969497	4.74987050688769	4.85753701098424	4.44924266020581	4.3899753677486	4.47644103733187	4.58613033352741	4.24351806629941	-0.679955911830099	0.0733729531445437	0.291717222358011
Merged-chr4-57954668-4	chr4	57954568	57954768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 1 of 4)	intron (NM_011660, intron 1 of 4)	1743.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	6.33393983696597	6.24079692725301	6.60000842757269	6.67826622390449	6.97088547275507	6.82321787739716	6.83628343037313	6.74521092013607	0.517171529518993	0.0186941202437124	0.122390432747167
Merged-chr7-140955500-4	chr7	140955367	140955567	+	968.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030694, intron 1 of 1)	intron (NM_030694, intron 1 of 1)	494.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	4.7115187655743	5.07292957726275	4.63065334300233	4.11383652657008	4.94063791239067	4.80779331390788	5.11808308223664	4.74808962678965	0.504020749248835	0.205826482860131	0.509583416469609
Merged-chr5-68049791-4	chr5	68049683	68049883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001018019, intron 1 of 3)	intron (NM_001018019, intron 1 of 3)	17948.0	NM_001018019	433899.0	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding	5.66703703210489	5.66301906567266	5.5318705766223	5.34007172669673	6.0424863319873	5.81736247236081	5.93500408181147	5.61134045247411	0.543082352140117	0.0439614226115821	0.213709199567668
Merged-chr11-16508257-4	chr11	16508152	16508352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011343, exon 1 of 4)	5' UTR (NM_011343, exon 1 of 4)	232.0	NM_011343	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	7.96765321256004	7.94724566056745	7.83099473326931	8.03456679395845	8.05579688253011	7.80020486144979	8.11516507171633	7.84850054950479	0.0186156670206404	0.911985959462179	0.96710160841083
Merged-chr12-3926304-3	chr12	3926205	3926405	+	737.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28640.0	NM_001278581	18976.0	Mm.277996	NM_008895	ENSMUSG00000020660	Pomc	ACTH|BE|Beta-LPH|Clip|Gamma-LPH|Npp|Pomc-1|Pomc1|alpha-MSH|alphaMSH|beta-MSH|gamma-MSH	pro-opiomelanocortin-alpha	protein-coding	3.24405429408365	3.18306068307726	3.40795556495515	3.09762474743892	3.32938482598653	3.09759553172131	3.39362896539582	3.24278189270417	0.166718525672515	0.759434147410448	0.905638317712331
Merged-chr2-129373489-4	chr2	129373373	129373573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015474, intron 2 of 2)	intron (NR_015474, intron 2 of 2)	-2334.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	8.01407039153849	8.06421084064136	8.00865323984844	7.73739750118347	8.06805120432997	8.17260871989672	8.11048808133611	8.08818781347318	0.200332772605679	0.226133669627543	0.534678729418644
Merged-chr11-48853833-7	chr11	48853680	48853880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16309.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	5.32374994578842	5.2901156752055	5.40534622790805	4.96450214765029	5.11942891733844	5.11420892804466	4.83719337287033	4.93425963408986	-0.435873668850151	0.176246865526073	0.471300459887308
Merged-chr12-69132191-3	chr12	69132110	69132310	+	688.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	26976.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	3.69734226803538	3.66044034993371	3.38717729646071	3.15485225812559	3.43337414986632	3.24203799008702	3.63494272668088	3.32561481424729	-0.227337365780841	0.681478324059994	0.86940916653104
Merged-chr3-123508440-4	chr3	123508359	123508559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028574)	promoter-TSS (NR_028574)	-123.0	NR_028574	69895.0	Mm.260791	NR_028574	ENSMUSG00000104960	Snhg8	1110065M07Rik|2010109N14Rik	small nucleolar RNA host gene 8	ncRNA	9.29389461010081	9.33625423871926	9.29528775882242	8.9573021825063	9.33635162774118	9.45318652581747	9.2578337904456	9.08304135429119	0.0794941066492658	0.62553329985137	0.839988089996697
Merged-chr18-67769843-4	chr18	67769737	67769937	+	935.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-5039.0	NM_001360934	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	4.97555617160014	5.0386539241924	4.82674508432934	4.04110204073265	5.51054753144082	5.31566756121105	4.98649404155883	5.19887305489188	0.97082670907292	0.0143184478716626	0.101491017830818
Merged-chr11-69914073-4	chr11	69913994	69914194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357906)	promoter-TSS (NM_001357906)	60.0	NM_019726	56310.0	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953|GPS-2	G protein pathway suppressor 2	protein-coding	6.56087834553886	6.34860613240325	6.53114350439664	5.81963689410798	6.52951112649366	6.53998036046785	6.05414541728218	6.41196546656135	0.104306809787719	0.702256178917437	0.880056958725802
Merged-chr1-191850963-4	chr1	191850879	191851079	+	981.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	29506.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	4.57520694536447	4.50121529722673	5.14347075614353	5.03515671437251	4.85097175807845	4.40877442064299	5.08897709906019	4.98838128065723	0.0208490831834308	0.957158959469865	0.984757116793997
Merged-chr3-15179697-4	chr3	15179600	15179800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152602.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	6.26257601347509	6.33219949031575	6.33924442535927	6.75003402828078	6.45181242676757	6.27540325917656	6.55424498275712	6.09317280978844	-0.140789285754134	0.570169131555834	0.809899593195224
Merged-chr17-35425260-3	chr17	35425135	35425335	+	972.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023124, exon 2 of 5)	exon (NM_023124, exon 2 of 5)	358.0	NM_207648	110557.0	Mm.439827	NM_207648	ENSMUSG00000073409	H2-Q6	0610037M15Rik|H-2Q6|Qa-6|Qa6	histocompatibility 2, Q region locus 6	protein-coding	4.64679591159009	4.63763461549089	4.44163382828735	4.43937818414536	4.91898089772634	4.42919183901678	4.46537418606501	4.68191415165431	0.25012313499816	0.498311696473742	0.76759838054097
Merged-chr15-30468439-2	chr15	30468342	30468542	+	862.5	f0_balb.idr|f0_c57.idr	intron (NM_001355502, intron 2 of 21)	intron (NM_001355502, intron 2 of 21)	295849.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	4.2473100782411	4.03417117479132	4.15461282879829	4.20620235456855	4.33006863483106	4.46293847491773	4.39579923591405	4.24533752301051	0.472572451078858	0.219441077158687	0.526993886166704
Merged-chr10-115362364-4	chr10	115362258	115362458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359470)	promoter-TSS (NM_001359470)	-91.0	NM_001359471	67226.0	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	8.85248054150193	8.39360576620449	9.06475289161585	8.96586489296378	8.4229865924809	8.67489525725314	8.8881974671596	8.66728690300592	-0.215883614891088	0.266761514363885	0.57842963999018
Merged-chr3-101293948-1	chr3	101293848	101294048	+	801.666687	f0_balb.idr	Intergenic	Intergenic	-6009.0	NM_013486	12481.0	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	4.09462758905397	3.83784023260802	4.69150661181306	4.40586880484291	3.54648937657691	3.59817529937987	3.66149041689747	3.73355145111059	-1.90266846219164	0.000168166750461635	0.00314749964004963
Merged-chr8-120716213-4	chr8	120716113	120716313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20145.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	7.84027058372395	7.66585590696004	7.8415807117709	7.94799769325884	7.76296403532052	7.89331774815161	8.04620957690284	7.68584250843979	0.0260667048596595	0.881872136023427	0.955502432033542
Merged-chr8-123855264-4	chr8	123855155	123855355	+	956.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028536, intron 2 of 3)	HAL1|LINE|L1	4954.0	NM_028536	73420.0	Mm.157746	NM_028536	ENSMUSG00000031971	Ccsap	1700054N08Rik|AI853424	centriole, cilia and spindle associated protein	protein-coding	5.31224494463208	5.51321406337498	5.12613856057487	5.40791051197772	5.20563264238737	4.82874702704484	5.03283600557214	5.30945976582114	-0.443618330347968	0.153593587693842	0.438357577323977
Merged-chr7-142284812-4	chr7	142284714	142284914	+	964.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_1-I_MM-int|LTR|ERVK	-10451.0	NM_001199309	100043627.0	Mm.388589	NM_001199309	ENSMUSG00000056885	Gm4559	-	predicted gene 4559	protein-coding	4.61752847960767	4.59633705044895	4.65411062338012	3.91293367214037	4.61996393115319	4.31903557252723	4.12202167290599	4.37632408937825	-0.208777364313709	0.636353837708414	0.846156897735892
Merged-chr10-127578243-4	chr10	127578172	127578372	+	968.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 21 of 88)	intron (NM_008512, intron 21 of 88)	42876.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	4.65336542084587	4.25331397718339	4.97638203844267	4.91554348049076	4.51097482647702	4.74723316098508	4.59144435613812	5.22857123959465	0.131219005674852	0.746855312871145	0.900253617240193
Merged-chr15-11966494-3	chr15	11966391	11966591	+	652.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040447)	promoter-TSS (NR_040447)	-571.0	NR_040447	73339.0	Mm.231975	NR_040447	ENSMUSG00000099349	1700047G03Rik	-	RIKEN cDNA 1700047G03 gene	ncRNA	3.31935832728108	3.09904193576048	3.09820385018669	3.30772918077982	2.99805967423145	3.07898894097659	3.02629069721106	3.15569535797268	-0.609333099252453	0.283117148652043	0.595263611222688
Merged-chr11-22987459-2	chr11	22987359	22987559	+	799.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3134.0	NM_009837	12464.0	Mm.296985	NM_009837	ENSMUSG00000007739	Cct4	2610204B21Rik|A45|C78323|Cctd	chaperonin containing Tcp1, subunit 4 (delta)	protein-coding	3.2818915044188	3.34544310965576	3.28233872657763	2.97696183322692	3.34015218758839	3.00248959548131	3.02649432847255	3.53369565278666	0.091440540712297	0.877021063436585	0.953885505336535
Merged-chr9-32501043-4	chr9	32500929	32501129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	40423.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	6.65854615609217	7.04796639296572	6.78316804309176	7.19354333690909	6.85230655737818	6.80497921653288	6.98783567831491	7.27018277180177	0.0508165954081821	0.822607781278804	0.932143478460956
Merged-chr9-106322700-4	chr9	106322676	106322876	+	806.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	41715.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	3.58931380082361	3.49105599176059	3.31724809487223	3.43901548071816	3.19776416578609	3.43049802562254	3.57444216943773	3.37480838052922	-0.228273296729532	0.660196242287865	0.858753368191481
Merged-chr19-5448771-2	chr19	5448671	5448871	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010235, intron 1 of 3)	CpG	1073.0	NM_010235	14283.0	Mm.6215	NM_010235	ENSMUSG00000024912	Fosl1	AW538199|Fra1|fra-1	fos-like antigen 1	protein-coding	3.34722405192738	3.31283467282468	3.23640157626229	3.2173759738375	3.06959966414874	3.22508144575252	3.10431998758533	3.39788980393077	-0.284256939600128	0.602770252167027	0.82782634442766
Merged-chr7-43665127-4	chr7	43665022	43665222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-4961.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	6.42787527175226	6.67429088694566	6.09312167933397	5.92739803175849	6.63775382366165	6.75167500149986	6.64569754516481	6.33456416568806	0.438216017034362	0.0925255037379229	0.332721363887815
Merged-chr8-46893142-4	chr8	46893066	46893266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A|LTR|ERVL	-93721.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	7.36703695560185	7.69020088391467	7.72693458855221	7.41429066194592	7.56277846825641	7.59653561737692	7.71995024609275	7.35277144182102	0.0132329862875439	0.944249694265167	0.97996280510462
Merged-chr10-20966304-4	chr10	20966199	20966399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358561, intron 6 of 22)	intron (NM_001358561, intron 6 of 22)	13752.0	NM_001358561	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	5.26386437574964	5.04794775228918	5.04193737978771	4.67690538924404	5.05186633198106	5.40778760329336	5.40105681887957	5.03851165374448	0.427423132606002	0.19889437426429	0.500569360927725
Merged-chr13-119488981-2	chr13	119488881	119489081	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027974)	promoter-TSS (NR_027974)	121.0	NM_001177666	633640.0	Mm.46679	NM_001039244	ENSMUSG00000074634	Tmem267	EG633640|Gm7120	transmembrane protein 267	protein-coding	4.89774751040675	4.9968165888438	4.93664794753377	5.46327691864883	5.24978985326303	5.07528482040506	5.0540788999967	5.29079853008566	0.0979951215215529	0.769886619217522	0.909886922298703
Merged-chr5-140331892-4	chr5	140331790	140331990	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026510)	promoter-TSS (NM_026510)	8.0	NM_026510	68017.0	Mm.38894	NM_026510	ENSMUSG00000029557	Mrm2	2310037B18Rik|Ftsj2	mitochondrial rRNA methyltransferase 2	protein-coding	4.43740345148586	4.47422185419094	3.84935548984407	4.38518682704828	4.41053589985461	4.35072076866192	4.37784867443966	4.07381060200268	-0.00531135955281601	0.98993544044924	0.99600840647023
Merged-chr19-29370730-3	chr19	29370634	29370834	+	773.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 1 of 6)	B2_Mm2|SINE|B2	3296.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	2.57553755908756	2.50663345119279	2.41754146449633	2.31466346798707	3.09978600961557	2.95959620594673	3.10740649894247	2.90527203380324	3.05344404477347	8.66506789111285e-06	0.000242441378703428
Merged-chr2-27714375-4	chr2	27714289	27714489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	3806.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	6.87051100812481	6.94948703322815	6.98621497258313	6.78707277949184	6.71534142880692	6.64476021468876	6.76871249672208	6.88009035768261	-0.19610485324562	0.320677034231232	0.63245145906536
Merged-chr3-136700834-4	chr3	136700743	136700943	+	911.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	30777.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	4.87587340868336	4.62627158007831	4.90934691705547	4.80584290584068	4.31416341644827	4.53159149845534	4.75042681609657	4.57671806920415	-0.568783887231156	0.111714730028105	0.36936746417087
Merged-chr6-113477389-2	chr6	113477289	113477489	+	895.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178942, intron 9 of 17)	intron (NM_178942, intron 9 of 17)	5934.0	NM_134159	171095.0	Mm.213397	NM_134159	ENSMUSG00000030281	Il17rc	1110025H02Rik|Gm19850|IL-17RC|IL17-RC|IL17-RL|Il17rl	interleukin 17 receptor C	protein-coding	3.08590209866396	3.24061205422306	3.31843791551541	3.10033980471512	3.26626269330274	3.19582711268688	3.13724363078113	3.26241705585415	0.130709225314833	0.809412901882014	0.926406189790318
Merged-chr12-110465090-3	chr12	110464999	110465199	+	710.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135001, intron 2 of 13)	intron (NM_001135001, intron 2 of 13)	17920.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	3.82081465319436	3.74315556912993	3.62514739890619	3.91905546557496	3.32273466224925	3.57064024923756	3.61058278907863	3.3273487005021	-1.07811275616153	0.0325028212757651	0.176537071010125
Merged-chr10-127937068-6	chr10	127936962	127937162	+	870.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	38527.0	NM_027301	70061.0	Mm.158320	NM_027301	ENSMUSG00000040127	Sdr9c7	1810054F20Rik|Rdh20|Rdhs|SDR-O|Sdro	4short chain dehydrogenase/reductase family 9C, member 7	protein-coding	3.12625266911268	3.13706630106472	3.69355489752088	3.10606493237763	3.21525881267981	3.23881875130511	3.17833917949948	3.36094187143887	-0.12267090710027	0.830933989458748	0.935143966285898
Merged-chr19-3437095-2	chr19	3436995	3437195	+	766.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22551.0	NM_010253	14419.0	Mm.4655	NM_010253	ENSMUSG00000024907	Gal	Galn	galanin	protein-coding	2.74536233040511	2.83439997655758	2.81372685538156	2.34633840619304	3.18334550141704	3.05230111978877	2.98694564430811	2.87703167713198	1.55415935961106	0.0240945687576427	0.144862514536722
Merged-chr7-29859996-4	chr7	29859894	29860094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172740)	promoter-TSS (NM_172740)	15.0	NM_172740	233058.0	Mm.297657	NM_172740	ENSMUSG00000058402	Zfp420	B230119D13|B230312I18Rik|mszf59-1|mszf70	zinc finger protein 420	protein-coding	6.44126207469329	6.58399186550985	6.20241349730144	6.63656610109186	6.97211372258284	6.85152022314182	7.16356666484235	6.70012461959934	0.6323819595796	0.00478973568532986	0.0460278920407849
Merged-chr17-36207088-2	chr17	36206988	36207188	+	637.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-16937.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	2.88077763698128	2.7794669055124	2.88116110377532	2.60822861134057	2.96041580638191	2.92884322262976	2.5419071466601	2.6902232443413	0.0445568585924694	0.946463340483345	0.980920139816526
Merged-chr6-129544393-3	chr6	129544288	129544488	+	779.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11104.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	3.49327756393818	3.42298634319712	3.6052052213534	3.29332321360359	3.94110462906776	3.61017681113863	3.64228733649713	3.7056045848843	0.937831412198113	0.0535010915572781	0.241419690373748
Merged-chr10-84402018-4	chr10	84401934	84402134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	38437.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	6.63421014466284	6.95859846780469	7.10874631258722	6.97145901368389	6.77479918252784	6.96666689656557	6.99183678144563	6.97332668448154	-0.0124024794965067	0.951648079632633	0.9827990291829
Merged-chr5-32761861-3	chr5	32761777	32761977	+	946.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177298, intron 3 of 7)	ORR1B1-int|LTR|ERVL-MaLR	-15535.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	3.17854549520949	3.01138904622969	3.46944094504078	2.76975856548985	4.32467182235988	3.99923804538528	4.52115947953545	4.00685236978294	3.86832626212995	1.97054662559722e-11	1.6939799307172e-09
Merged-chr18-6135144-3	chr18	6135037	6135237	+	962.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039692, intron 1 of 18)	intron (NM_001039692, intron 1 of 18)	961.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	4.04633878035351	3.79808303415214	3.94927145908131	3.85341925786551	4.34359871386403	3.9083794504668	3.93286673857425	4.29877799926676	0.628144020296114	0.146934770256548	0.42761123563813
Merged-chr19-55256456-4	chr19	55256338	55256538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027976, intron 1 of 21)	L1MB5|LINE|L1	3069.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	6.25987787756283	6.03151593977948	6.35001451466561	6.22737786787143	6.04360235148732	5.65174580928841	6.60595169131421	6.12029482313766	-0.10436727840306	0.706039530959504	0.881879743016467
Merged-chr1-55739259-3	chr1	55739125	55739325	+	662.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 5 of 5)	intron (NM_001114663, intron 5 of 5)	-192016.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	3.599087949672	3.1649575144717	3.85866613847301	3.47729216073806	3.19105495591855	3.32412686573887	3.13419874199642	3.20891008337636	-1.18309033742593	0.0388952810897582	0.198091529242122
Merged-chr13-37561061-4	chr13	37560969	37561169	+	916.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	215724.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	4.2385954885606	4.35357484862582	4.42484474499684	4.84774131008837	4.69236290368527	4.5545183741033	4.17121914135016	4.5454338526906	0.00276013290040967	0.994677434266632	0.99809702625617
Merged-chr6-120866242-4	chr6	120866133	120866333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153516, intron 4 of 6)	intron (NM_153516, intron 4 of 6)	30003.0	NM_153516	94044.0	Mm.27990	NM_153516	ENSMUSG00000009112	Bcl2l13	BCL-RAMBO|E430016C20Rik|Mil-1|Mil1	BCL2-like 13 (apoptosis facilitator)	protein-coding	5.43638552871946	5.57757740200081	5.20096015990307	5.52588194424748	6.07370759543785	5.83888768853837	5.75711609747691	6.11087634164323	0.832748673678532	0.00197111101056711	0.0231606043143653
Merged-chr2-167005060-4	chr2	167004972	167005172	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-8773.0	NM_001109905	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	5.35167783971862	6.17538119469148	5.67482869006575	5.28275852426479	6.07583654026401	5.82482365447796	5.88013734951334	5.47542607280304	0.27802895577408	0.395310353903993	0.694193627434107
Merged-chr4-119539567-4	chr4	119539469	119539669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172699)	promoter-TSS (NM_172699)	-92.0	NM_001290696	230700.0	Mm.259227	NM_172699	ENSMUSG00000032998	Foxj3	C330039G02Rik|Fhd6	forkhead box J3	protein-coding	6.89477870091053	7.24338534717866	7.05649264628974	6.90738504207246	7.50356281086188	7.52348010091863	7.35879138476763	7.43740516956438	0.58163404929679	0.00191273494009134	0.0225815306286574
Merged-chr1-161071532-4	chr1	161071499	161071699	+	928.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172644)	promoter-TSS (NM_172644)	832.0	NR_131029	70454.0	Mm.248212	NM_027429	ENSMUSG00000026708	Cenpl	2610300B10Rik|AW121806|AW550697|CENP-L	centromere protein L	protein-coding	3.62065151937956	4.20082474008812	3.7411998691585	3.80049886229597	4.015996372154	4.07575958084478	4.07348392269321	4.04480783203765	0.516489074346279	0.250196491979321	0.561249063980067
Merged-chr13-37964770-4	chr13	37964637	37964837	+	920.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29471.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	4.55869062395031	4.53659375190248	4.5991296438165	4.50600607524412	4.7547705705001	4.51629649151608	4.49791876181431	4.55648778787697	0.108528525969115	0.757995832322102	0.904926340425875
Merged-chr5-121384078-4	chr5	121383963	121384163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163470, exon 2 of 12)	exon (NM_001163470, exon 2 of 12)	1346.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	6.14039035338824	6.22163285464679	5.63449213359896	6.09466298225869	6.30677885104936	6.27623244237497	6.02827041873199	6.0759570811774	0.204994610097215	0.41804929105819	0.711628236434313
Merged-chr7-128391470-5	chr7	128391411	128391611	+	911.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 3 of 4)	intron (NM_026418, intron 3 of 4)	26661.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	4.04935659411817	4.1165623668625	3.95250028727464	3.79650839803545	3.96295616727547	4.07508478101515	4.12191921132509	4.09352015686071	0.238185583322741	0.572241692376339	0.811143909621735
Merged-chr18-60214428-7	chr18	60214196	60214396	+	891.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033767, intron 2 of 2)	intron (NM_001033767, intron 2 of 2)	2219.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	3.87454688555028	4.05557087383765	3.68445402977741	3.33861813791936	4.77104541751932	4.5423668119137	4.60434364825969	4.48305672508992	2.21214975958857	7.04803204194919e-07	2.53882526677076e-05
Merged-chr9-121314983-4	chr9	121314876	121315076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	17474.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	6.99247874101921	7.38571125370156	7.13902915309247	6.92595084408457	7.08234544623834	7.14487116537958	7.16972093287622	7.01417255278675	-0.0190279663458599	0.924458413234494	0.97203671461139
Merged-chr9-110478798-4	chr9	110478694	110478894	+	912.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163569, intron 1 of 20)	intron (NM_001163569, intron 1 of 20)	1800.0	NM_001163569	16578.0	Mm.42170	NM_010628	ENSMUSG00000032489	Kif9	-	kinesin family member 9	protein-coding	4.51595539785936	4.04086184470335	3.92633855273792	4.65952177718955	4.55851842135843	4.43075875796102	4.49554569347339	4.76363638644669	0.516803201888771	0.234247273514542	0.544053856944459
Merged-chr12-102284403-1	chr12	102284303	102284503	+	769.333313	f0_balb.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	762.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	4.21271768483776	4.05002648119515	3.68544634329903	3.23248162309282	3.84514526634304	3.5667624343948	3.30135159520118	3.73657099650902	-0.641280565106741	0.27102637309485	0.582795057102241
Merged-chr6-28430859-6	chr6	28430748	28430948	+	992.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019569, intron 2 of 6)	MTD|LTR|ERVL-MaLR	2947.0	NM_019569	56223.0	Mm.31708	NM_019569	ENSMUSG00000029707	Fscn3	-	fascin actin-bundling protein 3	protein-coding	4.06248769433151	4.12861177021746	3.96640389169126	4.35195261688719	3.9755460943255	3.742305999691	4.09080339907789	4.013295039798	-0.496016395425109	0.256225960162692	0.567812876264657
Merged-chr19-41775978-4	chr19	41775893	41776093	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027667, intron 9 of 11)	L1MB2|LINE|L1	26091.0	NM_001163495	71085.0	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	4.95758233269051	4.55980387257159	4.88447795918206	4.96705281749245	5.05825782734809	4.98442865182919	5.10105732449664	5.65301159608343	0.704844340618765	0.0424374772268956	0.209137924304019
Merged-chr7-98838057-4	chr7	98837960	98838160	+	798.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285795)	promoter-TSS (NM_001285795)	-785.0	NM_009519	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	3.63449512293385	3.83431686820185	3.57526031774783	3.72375246124062	4.03621295903638	3.86675903287943	4.06439424245078	4.23402741012889	1.01581711142457	0.0226130038529682	0.138887824769214
Merged-chr2-120565556-4	chr2	120565436	120565636	+	982.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1677.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	5.03715972827329	5.06341908313839	5.19618178549588	5.13975794546747	4.76210373335301	5.14287797490025	4.90917308649525	5.06780945382549	-0.281503909580539	0.370147431029052	0.674294883761598
Merged-chr11-108846680-2	chr11	108846580	108846780	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029606, intron 25 of 27)	intron (NM_029606, intron 25 of 27)	-73669.0	NM_015732	12006.0	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	2.33665709842147	2.28194605592664	2.25415948569439	2.13994425142918	2.75652806097374	2.80274165756479	3.00331576740844	2.7496634484333	3.55280528683378	3.71019851325265e-06	0.000113831129299487
Merged-chr18-38350169-4	chr18	38350078	38350278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11185.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	8.8115069225915	8.87785970730788	8.77238755636245	8.83858814387152	8.70713274870497	8.93376667786448	8.83518734814847	8.54200736056388	-0.0817313284527547	0.594302668595012	0.823411261518897
Merged-chr4-8915748-4	chr4	8915657	8915857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	164433.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	5.74911829712599	5.13956654656733	5.47976804372472	5.97787860778053	5.70713640396959	5.7157377019994	5.98193508900324	5.98864540297742	0.345593938390693	0.261554408728178	0.573489241871145
Merged-chr10-80807435-4	chr10	80807330	80807530	+	987.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007445, exon 5 of 5)	exon (NM_007445, exon 5 of 5)	2182.0	NM_007445	11705.0	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	4.67950860065997	4.74307710347973	4.41313806927367	4.95880109320814	4.77679154762507	4.93104873712866	4.87773272076169	4.86390129586776	0.256595684239509	0.465326246807455	0.745811792142008
Merged-chr5-127621326-4	chr5	127621224	127621424	+	982.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3932.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	5.60465319141526	5.53619162210972	5.32842302274086	5.61425934706372	5.13644538797187	5.19519630337045	5.67230945827019	5.44288862794309	-0.278733907299053	0.34615833580502	0.654406031703397
Merged-chr6-134152142-4	chr6	134152032	134152232	+	980.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	116432.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	5.87293273955955	6.40711563169583	5.38163668815925	5.51981670379425	5.92771740348981	6.09338946131289	5.95178465243029	5.16181518332318	-0.0453600201570096	0.899216200370978	0.962471390297979
Merged-chr5-64861135-3	chr5	64861051	64861251	+	845.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57628.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	3.12637858529155	3.23385956746518	3.24758098917608	3.27840046375185	3.30336069105331	3.41640253148983	3.2355712352894	3.18699091246794	0.224214953009715	0.672884362420621	0.865470992373222
Merged-chr1-152573251-4	chr1	152573143	152573343	+	985.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	51974.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.14423674159578	4.97332618399552	5.7066162131323	5.36837121356488	5.12848560906277	4.93905901590934	5.46810233392801	5.3289724279733	-0.174208567317142	0.601393191690525	0.82708957558551
Merged-chr2-34976617-4	chr2	34976528	34976728	+	963.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-14856.0	NM_001326601	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	4.98650029453554	5.07164993284461	4.60265681096526	4.25778779467107	4.74486084807612	4.46243922996245	4.73348731939566	4.27766235071849	-0.400690170097333	0.337926879572213	0.647715215954039
Merged-chr17-26487375-4	chr17	26487259	26487459	+	928.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	21113.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	4.30109607165119	4.45586185523988	4.47478669170388	4.46660776258359	4.51856719612357	4.11399953488064	4.49366074825177	4.55021998701029	0.0161203535797628	0.966045222232277	0.988022131369328
Merged-chr3-145192209-2	chr3	145192109	145192309	+	717.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-B4-int|LTR|ERVL	73609.0	NM_025714	52184.0	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding	3.04385196581177	2.88737548861206	2.98459827394481	2.85742899729732	3.0548663560818	2.96356230779187	3.14279173566736	2.98311740565521	0.427672165000128	0.457621570224723	0.740689110061175
Merged-chr4-62729391-3	chr4	62729283	62729483	+	898.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	55409.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	3.20352912468916	3.98380289347337	3.48574501936218	3.18317550073269	3.01173529164224	3.03902430041102	2.99231856123379	3.32214635943421	-1.51977267581542	0.0167332593241776	0.113339537239035
Merged-chr17-83692042-2	chr17	83691942	83692142	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14121.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	3.06524167473183	3.19389883834769	3.13263565583051	2.90462903208975	3.47991630325751	3.43182183886655	3.18493527919611	3.7443397810984	1.49877064528684	0.00675242212432214	0.0593078300082831
Merged-chr10-88795432-3	chr10	88795337	88795537	+	927.255554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175158, exon 22 of 62)	exon (NM_175158, exon 22 of 62)	31377.0	NM_175158	70683.0	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	3.88785841669073	3.7335803719195	4.0219292072604	4.08009456229976	3.6237120501716	3.49192176223456	3.6155301201158	3.78868834392751	-0.930512599858746	0.0499478112134997	0.231596329513758
Merged-chr15-68053097-3	chr15	68053008	68053208	+	905.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	205748.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	4.07245511797256	4.09324759567605	4.22099891745616	4.67633111875871	4.1162126095718	4.29960350549893	4.49011826487204	4.35099891900525	0.00847212753901144	0.984408184220796	0.994312737627793
Merged-chr9-22119650-4	chr9	22119555	22119755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2460.0	NM_001357312	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	7.35647454433156	7.43848180363907	7.53374640627574	7.45960571122247	7.13135600159025	7.181510987605	7.12858217411571	7.02495401257117	-0.448171267459951	0.0112303818799204	0.0856954708223475
Merged-chr11-107317906-4	chr11	107317790	107317990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-128509.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	8.94849331996105	8.87247041907314	8.76646341409568	8.54018798156164	8.99610891981952	9.08362846093805	9.0107739101753	9.01481181017486	0.300297787439611	0.0537842049494636	0.242052726612157
Merged-chr17-35076764-2	chr17	35076655	35076855	+	679.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027366)	promoter-TSS (NM_027366)	-187.0	NM_027366	70274.0	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	3.11969919431897	3.15618150643242	2.86173564001336	2.89034542761039	3.09498766944206	3.23152924289275	3.10833853051928	3.23050053392976	0.634437506965436	0.265137598401552	0.576956662317123
Merged-chr17-67193920-4	chr17	67193833	67194033	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	160526.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	5.34417128849618	5.62650139089399	5.63506662175955	5.47997375812098	5.02666941081263	5.0271542544821	5.25823816247406	5.37064571321785	-0.633551483506245	0.0313836277680337	0.172525119006864
Merged-chr9-40414589-4	chr9	40414558	40414758	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 1 of 20)	RLTR16C_MM|LTR|ERVK	-38241.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	4.58945081402208	4.809021635093	4.45879867792153	4.73664894319197	4.65867697253365	4.58997295022386	4.98653845667653	4.70630746333764	0.165712745787649	0.638678672587537	0.84731839493744
Merged-chr13-93240929-4	chr13	93240832	93241032	+	839.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48515.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	4.34545378231565	4.01045532244998	3.90298800642805	3.7203796728972	4.15311079652692	4.12864830919826	3.93839336644978	4.00239354056507	0.159990806991978	0.720961399336237	0.888565294328503
Merged-chr3-18625028-6	chr3	18624971	18625171	+	974.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144594.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	4.47956625325463	4.17226087910111	4.94165437120991	4.40490420525472	4.12550271271271	4.34426596634719	3.98849723636015	4.43691286080059	-0.689687609481476	0.10885444383212	0.364187751228827
Merged-chr14-55386972-3	chr14	55386879	55387079	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91779.0	NM_001037938	28200.0	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding	5.71394325067929	5.16208063006503	5.77209112865453	5.7926887791208	3.86805269846997	3.97711184963472	4.1005690065326	4.17835008651122	-3.73793420666101	9.79870114856288e-17	2.10078840076373e-14
Merged-chr4-109458217-2	chr4	109458117	109458317	+	820.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013876, intron 1 of 2)	intron (NM_013876, intron 1 of 2)	18288.0	NM_013876	29864.0	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	3.31151644794099	3.19978910293221	3.3682423205769	3.38799883468372	3.41882069958029	3.36441320728702	3.24169556339684	3.42025248208003	0.150805200493093	0.770893528221885	0.910321191255463
Merged-chr10-62594130-3	chr10	62593998	62594198	+	881.533325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019553, exon 4 of 15)	exon (NM_019553, exon 4 of 15)	8200.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	3.61184233949244	3.62106432515309	3.36611118717409	3.29101590358874	3.94056094332329	3.9420285416328	3.6524219291513	3.99582567448462	1.29345709450023	0.00690443143443242	0.0602860726744117
Merged-chr5-142929311-4	chr5	142929239	142929439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-22585.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	6.09433085330263	6.03679060480523	6.11576410147552	5.9823822190166	6.15053247465843	6.07230149398791	5.97997307710639	6.22677518041223	0.0965531542319026	0.675659158086683	0.866900613183491
Merged-chr19-56713850-4	chr19	56713755	56713955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8517.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	7.05330584343331	7.58039375912334	7.57591320293223	7.0485587577693	7.20254383351734	7.50397465024339	7.4433679246217	6.82859219392442	-0.0911074996994576	0.703821035830518	0.880893205840947
Merged-chr9-109057670-4	chr9	109057566	109057766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011637)	TTS (NM_011637)	1585.0	NM_001012236	22040.0	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	6.67498302954801	6.60180355119022	6.13575057228568	6.44348625606484	6.58477287807872	6.62886168933498	6.75360867552875	6.64177806198218	0.249549589543201	0.259800648856951	0.571580699934748
Merged-chr3-90251066-4	chr3	90250900	90251100	+	921.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013901, intron 3 of 3)	B1F|SINE|Alu	2808.0	NM_013901	30791.0	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	2.90083130517286	2.95499769130059	2.96075935814192	2.80659191883527	2.84866579098661	2.87904353115556	2.76478560565701	2.95919298155575	-0.169870678290145	0.778159752694824	0.913566660130711
Merged-chr12-119386456-4	chr12	119386357	119386557	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56953.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	5.30379139633232	5.23550503323901	5.04852063516775	5.12513514858691	5.18305286741645	5.41814119768983	4.95195339353937	5.32963846686472	0.0929552559196878	0.759198677293706	0.905479988047768
Merged-chr5-130205711-4	chr5	130205603	130205803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199059, intron 4 of 8)	intron (NM_001199059, intron 4 of 8)	-14041.0	NM_001081394	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	5.4172910863691	5.85211157936583	5.21315417024563	5.48417665306865	5.81957004685422	5.79926335794053	6.26379303594495	5.90709834641398	0.725712309406338	0.0117929734777076	0.0887703108259041
Merged-chr8-120715421-4	chr8	120715324	120715524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20934.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	6.55100076360937	6.53278309118634	6.69139799309262	7.16212179102892	6.38982578136713	6.49726945750205	6.50227495086269	6.51434392213434	-0.443980118620922	0.0662254068354105	0.27417310726096
Merged-chr8-85077171-4	chr8	85076977	85077177	+	779.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026399, intron 5 of 8)	intron (NM_026399, intron 5 of 8)	3669.0	NM_026399	67836.0	Mm.334680	NM_026399	ENSMUSG00000005150	Wdr83	1500041N16Rik|Morg1	WD repeat domain containing 83	protein-coding	3.31788725614787	3.2613281538726	3.54273886453871	3.18485951891346	3.45395047208655	3.60670155813406	3.52785957763836	3.54065799863391	0.717888602359482	0.156407121750768	0.442290831476617
Merged-chr5-62762742-4	chr5	62762646	62762846	+	906.8214109999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	3431.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	3.41873341357345	3.04551754244648	3.32007331897095	2.93400402085581	3.2747028928498	3.07527362972923	3.02167322966325	2.964412051008	-0.355684485248533	0.555820128948571	0.801705036623952
Merged-chr7-25680719-4	chr7	25680610	25680810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362154)	promoter-TSS (NM_001362154)	-70.0	NM_001362154	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	7.87471022216851	8.3419306797665	7.77393017289871	7.48229409767485	8.27504184339294	8.41197694227831	8.21767691819532	7.99271692408306	0.424074241864963	0.0531540446200149	0.240444860259687
Merged-chr3-108401902-4	chr3	108401782	108401982	+	974.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004177, intron 9 of 33)	intron (NM_001004177, intron 9 of 33)	13612.0	NM_017392	53883.0	Mm.39728	NM_017392	ENSMUSG00000068740	Celsr2	Adgrc2|EGFL2|Flamingo1|flamingo|mKIAA0279|mfmi1	cadherin, EGF LAG seven-pass G-type receptor 2	protein-coding	4.66097941246555	4.59093816690134	4.58361367564611	4.74089304528321	4.51621548169889	4.58694228776715	4.60183138717191	4.58067222134571	-0.186685125137688	0.589720424084544	0.820539533210917
Merged-chr18-34758730-4	chr18	34758647	34758847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175104)	promoter-TSS (NM_175104)	-103.0	NM_175104	66306.0	Mm.29424	NM_175104	ENSMUSG00000034300	Fam53c	2810012G03Rik|Gm21179	family with sequence similarity 53, member C	protein-coding	6.99666518943573	7.06906416572478	6.43427679906987	6.85830786698669	7.08372951369175	6.70230203877534	6.63820384764635	6.48452704066239	-0.149841612057547	0.539939155890789	0.792440690679099
Merged-chr2-115582067-2	chr2	115581967	115582167	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207264, intron 1 of 10)	intron (NM_207264, intron 1 of 10)	351.0	NM_001145898	399568.0	Mm.134929	NM_207264	ENSMUSG00000040282	BC052040	-	cDNA sequence BC052040	protein-coding	3.79240758593876	3.55711646749973	3.74353830066788	3.90523589846839	3.74732724148592	3.63947139895951	3.67743384721702	3.63659533271576	-0.259233636554604	0.580926207861387	0.816043625532665
Merged-chr3-8998515-4	chr3	8998416	8998616	+	956.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	5688.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	4.60002218111581	4.29037825349919	4.81725999135113	4.51787080563989	4.57672199482997	4.60815053641783	4.3211500499613	4.81396326006066	0.0615028722647133	0.870481182635298	0.951392578438799
Merged-chr4-55665028-4	chr4	55664936	55665136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132561.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	7.02143055541869	6.77198727117993	6.90922163969697	7.49903290850785	6.83434136745526	6.55532380341205	6.54571200364994	7.11050526593005	-0.431479107092554	0.0887924799908849	0.325166734316159
Merged-chr8-70793029-3	chr8	70792946	70793146	+	965.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199308)	promoter-TSS (NM_199308)	-613.0	NM_199308	546071.0	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding	4.57049350611662	4.19678297014754	4.34130943875687	4.2892037973914	4.37668927914672	4.33491773650729	4.04378752988258	4.00477077353529	-0.349775967706086	0.392895678250711	0.692205902019298
Merged-chr1-33719965-4	chr1	33719866	33720066	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008999)	promoter-TSS (NM_008999)	70.0	NM_008999	19335.0	Mm.86744	NM_008999	ENSMUSG00000004768	Rab23	AW545388|opb|opb2	RAB23, member RAS oncogene family	protein-coding	5.50507172847681	5.35892673669487	5.28819264350451	5.11193556036164	4.8610562027835	5.04999401666083	5.23201118308841	5.39804834878018	-0.314534354653922	0.322360412727536	0.633942634212845
Merged-chr11-60933653-4	chr11	60933520	60933720	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008928, intron 1 of 11)	intron (NM_008928, intron 1 of 11)	1563.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	5.07339629069569	4.75680890069953	4.8897165376056	4.57865254278703	4.66056168859699	4.80755263463598	4.39336297368052	4.40986451277489	-0.518970482228673	0.162762850150078	0.452255606647826
Merged-chr10-95677719-4	chr10	95677612	95677812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger12|DNA|TcMar-Tigger	-113566.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	7.58814405455316	7.50998411132606	8.13492613110132	7.78645142809882	7.86473528572158	7.56247845163179	7.77362520705185	7.71238899112247	-0.05230380814257	0.793779290179405	0.92022175040272
Merged-chr19-17136975-5	chr19	17136848	17137048	+	758.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	180830.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	3.63317022786166	3.16234939017466	3.67745077792264	3.39621630948111	3.13878737988205	2.97619004628449	3.07693599215887	3.27449609457635	-1.34176769836797	0.0234859422746967	0.14228495064862
Merged-chr2-119359670-2	chr2	119359599	119359799	+	772.666626	f0_balb.idr|f1_balb.idr	Intergenic	B1_Mus2|SINE|Alu	8457.0	NM_026929	69065.0	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	4.07250272570882	3.90355210385853	3.88476635588786	3.29626937853106	2.92841033923367	3.02142342615578	2.97631235381591	2.90272283640394	-3.75186329011494	1.55880243967647e-06	5.24109583626506e-05
Merged-chr5-113634049-4	chr5	113633962	113634162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	9541.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	7.52971724468947	7.58354946994673	7.80018364036857	7.7572147737428	7.30511634843758	7.35356580822432	7.56444777526895	7.46044592784872	-0.337616334958889	0.0587793258279679	0.255237532522507
Merged-chr17-55736869-4	chr17	55736764	55736964	+	900.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13120.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	4.26198231634201	4.6325373954581	4.68578113672068	4.80395365236111	4.12827623997747	4.53490039042415	4.42879032750026	4.68263939645552	-0.386373518317054	0.330900200451342	0.642104407905452
Merged-chr2-181890204-3	chr2	181890082	181890282	+	890.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	25822.0	NM_025901	67005.0	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	3.27466716243067	3.28491618633782	3.22034100301761	3.56542500274615	2.76119257653535	2.78040856512172	3.09218243485726	3.16143957508701	-1.64602545210217	0.0107802359990473	0.0833869178630935
Merged-chr5-9087099-4	chr5	9086988	9087188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13649.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	6.83680920335365	6.42796372854121	6.59949523545704	6.79184119367482	6.40096903847395	6.67860760597917	6.40105915929596	6.29979103911899	-0.336409993420389	0.134764979731431	0.408606086739798
Merged-chr2-145675092-2	chr2	145674992	145675192	+	693.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-26103.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	2.95140993481227	2.97969437113254	3.45331977024865	3.11112271863434	2.90512481294117	3.19251628794908	3.24074448041473	3.07964864389668	-0.117875377404299	0.843433877694665	0.940527016346737
Merged-chr18-46573045-4	chr18	46572947	46573147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173394, intron 1 of 2)	L2|LINE|L2	1486.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	5.86326984318914	6.03020862729417	6.02530889379385	6.34837298615996	6.14444020656473	5.88665702152817	6.19273810077603	6.02101393571486	-0.0436710709161232	0.863090168325023	0.94847059222142
Merged-chr18-58160709-4	chr18	58160624	58160824	+	954.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010181, intron 5 of 64)	intron (NM_010181, intron 5 of 64)	49202.0	NM_010181	14119.0	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	4.75345456770334	5.02394742624709	4.75424189064495	4.83647246359352	4.51031515642287	4.18513004932684	4.49758716277497	4.55760053695712	-0.868857646736674	0.016707550870258	0.113227341082938
Merged-chr11-60930967-4	chr11	60930910	60931110	+	876.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027800, intron 1 of 1)	L2a|LINE|L2	857.0	NR_027800	24082.0	Mm.46270	NM_025293	ENSMUSG00000042549	Map2k3os	F3-1|Gm16516|Gtlf3a	mitogen-activated protein kinase kinase 3, opposite strand	ncRNA	3.29217129380257	3.78586756778167	3.4800044000656	3.40919634260221	3.57562620862137	3.91038455860665	3.46692410651074	3.64206637608015	0.481588319844192	0.34670684127246	0.654902886922482
Merged-chr2-157138307-7	chr2	157138223	157138423	+	960.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3101.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	3.31172154590229	3.14077923992525	3.25435069476156	3.13627186804777	3.08228898114175	3.63840117821217	3.1198983204485	3.4185677423981	0.439607813045506	0.432862681674551	0.722679852205114
Merged-chr7-118534524-4	chr7	118534419	118534619	+	959.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1163.0	NM_009940	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	5.16184181057836	4.89432243843149	4.66726576202467	4.56488800188163	5.65884387808233	5.66582363281271	4.93289425586903	5.19039296336584	1.07775552298132	0.0024893061727618	0.0276680705919757
Merged-chr17-28015584-4	chr17	28015460	28015660	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 12 of 24)	intron (NM_181413, intron 12 of 24)	65024.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	4.71761616646674	5.07435068230927	4.90012098743978	5.04586015048148	4.79344015280629	4.3271947579465	4.77147134189961	4.59257788523082	-0.635083465590712	0.0748695258613049	0.295144992317336
Merged-chr8-41011014-2	chr8	41010913	41011113	+	813.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 7 of 13)	intron (NM_001005863, intron 7 of 13)	-6455.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	3.29047391754018	3.06253545490118	2.78242501945524	2.82648491996786	2.84109124419834	3.23609588769562	3.27662953444344	3.39014763021788	0.773056997636672	0.21739572227599	0.524298150941693
Merged-chr5-125349947-3	chr5	125349876	125350076	+	735.916687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8882.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	2.64847015791492	2.58446475552111	2.86809695270418	2.47733175333565	3.1625573095541	3.39200635473919	3.15574045997315	3.11298076181541	2.64504462340751	3.64076056329649e-05	0.00085753043062502
Merged-chr13-41601204-4	chr13	41601122	41601322	+	958.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-4994.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	4.99874872376589	4.83857285723395	4.96441479158471	5.61733148889826	4.89348739714358	4.86695341454719	5.00934874797161	5.06367594512607	-0.403252774818732	0.263355724703386	0.575347935569068
Merged-chr19-8723315-4	chr19	8723205	8723405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002896)	promoter-TSS (NR_002896)	64.0	NM_001161413	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	8.31553158687631	8.65117450801994	8.26006997222266	7.88557094136593	8.49669170179	8.71339372859399	8.3214740663052	8.11329897704424	0.161643387221029	0.451519456328733	0.736113224508082
Merged-chr4-130902390-4	chr4	130902278	130902478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10956.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	6.17006958704354	5.97006817045038	6.59622435770291	6.87490164529362	6.08626687606408	5.86653154933657	6.07764383271499	6.22597783374452	-0.597404556304517	0.0364636210311717	0.189935322407346
Merged-chr2-4591813-4	chr2	4591723	4591923	+	939.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 5 of 11)	MTEb|LTR|ERVL-MaLR	32069.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	4.29675978075402	4.20078741432797	3.99567970989252	4.37833397123516	4.6332806213723	4.46974345819887	4.40513360812172	4.33883186885334	0.550031368159006	0.160234622840875	0.448252641848399
Merged-chr2-73485603-4	chr2	73485510	73485710	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	143.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	5.23598446941678	5.13439561210569	5.38342045758721	5.6735619537671	5.29026747531994	5.10010552096875	5.11506136959466	5.03191987089136	-0.45242991375826	0.151804573834639	0.435556988107698
Merged-chr6-115380993-4	chr6	115380890	115381090	+	851.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 1 of 7)	intron (NM_001308354, intron 1 of 7)	18641.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	3.79406559355071	3.81792198424585	3.63258108531682	3.63039238461287	3.81968344068931	3.69084916512335	3.96503425202154	3.93603782468657	0.415672410912314	0.355257519464709	0.661813745489821
Merged-chr6-89340219-3	chr6	89340128	89340328	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 9 of 31)	intron (NM_008881, intron 9 of 31)	22385.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	3.21300594008915	3.59372084787652	3.34031014419697	3.4143747596571	3.47289080468713	3.6789253066354	3.49625728873798	3.45426343728696	0.415797705519282	0.414219962741743	0.709016995190326
Merged-chr1-164074835-4	chr1	164074748	164074948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164059, intron 6 of 7)	intron (NM_001164059, intron 6 of 7)	12772.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	5.11638803303713	5.09232216146507	5.04643492684813	5.21973391230258	5.50577615798134	5.25878029886222	5.52252357380544	5.39099085758754	0.540274130025446	0.0605904677388511	0.260068985812033
Merged-chr10-121429399-4	chr10	121429294	121429494	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	46856.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	6.51453429287001	5.71583530073798	6.21596527957164	6.3515360468116	5.63101281898532	5.31631172888984	5.39671033539331	5.99817269877864	-0.986512558067352	0.00133994854171551	0.017052779769492
Merged-chr3-15331667-3	chr3	15331552	15331752	+	795.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001076679, intron 1 of 2)	intron (NM_001076679, intron 1 of 2)	650.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	4.22745063136181	3.52242457438146	4.44005255864642	4.47427618544943	3.35633090085666	3.51413347472741	3.38237626758922	3.71172183949725	-2.19532828827441	0.000100389055449897	0.00203694201193508
Merged-chr4-47351694-4	chr4	47351607	47351807	+	865.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID2|SINE|ID	-1515.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	3.36770360444434	3.36928437305628	3.60103042877944	3.48974070669941	3.5841916510246	3.77170570886799	3.68766363083619	3.79596717893329	0.780629476880122	0.104096351224662	0.354583472227925
Merged-chr16-50449305-4	chr16	50449210	50449410	+	942.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-16844.0	NM_001347240	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	4.51050707986741	4.67295308194899	4.78929387752861	4.81859210130515	4.82527368528729	4.68666631074695	4.73062529097053	4.59405636659408	0.00936917206331497	0.978260701453779	0.99227959863068
Merged-chr17-28522700-4	chr17	28522622	28522822	+	920.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8139.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	5.045774026634	4.4990881759746	4.48972103730382	4.44588441873907	4.79853030265547	5.02404493416474	4.7570207398309	4.94970754719674	0.526112536875001	0.145728865076105	0.425499831292643
Merged-chr10-7076379-4	chr10	7076297	7076497	+	815.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53212.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	4.34022842177221	4.74181613632491	4.74816358706589	4.7008617711098	4.51644433698756	4.4206476168175	4.69034048663459	4.38523881190746	-0.306874580336172	0.403802311607302	0.700996164526027
Merged-chr7-29522410-4	chr7	29522314	29522514	+	824.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16954.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	4.27055157785907	4.21982300122333	4.12557878236813	4.27458245512828	4.61499783513432	4.48872435564917	4.57395840621707	4.40034542950588	0.700728704672666	0.0588965558595809	0.255528340212673
Merged-chr7-116307013-1	chr7	116306913	116307113	+	565.0	f0_balb.idr	intron (NM_001305185, intron 3 of 26)	intron (NM_001305185, intron 3 of 26)	1363.0	NM_001305185	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	2.86650038247847	2.82501907214522	2.92589167535677	2.9266513545125	2.74771081159783	2.84444000922437	2.73175041598385	2.86543257123133	-0.430206038084364	0.482421761177812	0.75723418393445
Merged-chr4-130878685-4	chr4	130878571	130878771	+	956.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34663.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	4.56482434756512	4.40207539398605	4.31354103999143	4.28643338135985	4.67287628271667	4.44181671300118	4.5441169298974	4.31091880720754	0.277444956574016	0.457650495076538	0.740713642936307
Merged-chr1-171011861-4	chr1	171011761	171011961	+	915.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7065.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	4.97689786711249	4.42905220012813	4.49902059524553	4.70061487208494	4.67378688849265	4.4882538101695	4.82525225657926	4.87897558784201	0.120514664516113	0.741317236001262	0.898139463026673
Merged-chr14-73384364-4	chr14	73384247	73384447	+	866.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	942.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	3.69190518504581	3.2467944823305	3.5863970616057	3.76107149877078	3.70050246047768	3.81077044926184	3.67715047168933	3.63846267415927	0.345004971267479	0.490413176218201	0.762197464300522
Merged-chr11-4190826-4	chr11	4190701	4190901	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	3968.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	5.57697288067044	5.4341631069561	6.25893062507431	5.99568384468913	5.50862958631594	5.07975182625798	5.18509318762726	5.37277583927527	-0.945338684861884	0.00360608716553975	0.0369107964273733
Merged-chr15-12312070-4	chr15	12311977	12312177	+	914.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9419.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	4.52330938892259	5.11478745563342	4.60533565306061	4.63791953198085	4.63820284845367	4.5220552485368	4.32549424756816	4.24178265305423	-0.646811207766215	0.0998316425017383	0.346609234862679
Merged-chr10-99168591-4	chr10	99168483	99168683	+	968.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	60448.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	4.82725748228095	5.06223313987473	4.74738850494974	4.71218181447008	5.0099835103925	5.24873438586341	5.4095644070046	4.86334050316237	0.597636616790845	0.0723294566661885	0.288979219941694
Merged-chr2-133511639-4	chr2	133511543	133511743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40516.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	5.70729421289096	5.32447409661703	5.47721595212368	5.39353149273715	5.74870680672293	5.2653346417848	5.65573629537216	5.50122786273159	0.158492420410376	0.580376011083833	0.815718435955212
Merged-chr17-26168184-4	chr17	26168101	26168301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159598, intron 2 of 9)	ORR1B1|LTR|ERVL-MaLR	29515.0	NM_001159598	12005.0	Mm.23684	NM_009733	ENSMUSG00000024182	Axin1	AI316800|Axin|Fu|Kb|Ki|fused|kinky|knobbly	axin 1	protein-coding	5.66528029845288	5.20237084379962	5.56599073895407	6.09798515281074	4.79930637566039	5.3160560814315	5.4295133652758	5.63791730415713	-0.626421300536243	0.0785538177014523	0.30325318310943
Merged-chr17-7928032-4	chr17	7927936	7928136	+	798.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145968, intron 4 of 9)	intron (NM_145968, intron 4 of 9)	2036.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	3.89335584361188	4.06133136508188	3.89391622872815	3.55621879582533	4.13976607320607	3.72970991680559	4.10745524216394	4.08060464689886	0.488946066206216	0.287965616230241	0.599909403741983
Merged-chr6-148990069-4	chr6	148989969	148990169	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177192, exon 21 of 21)	3' UTR (NM_177192, exon 21 of 21)	-43599.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	5.15591476687944	5.31878146401936	5.01452503174656	4.8398035889895	5.5697610520793	5.39759615820749	5.47979822297733	5.47809525199482	0.742181613392392	0.0125096757139014	0.0924829879143943
Merged-chr6-88831674-4	chr6	88831586	88831786	+	886.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10249.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	4.0969739083716	4.14645448520386	4.24154904657657	4.09605429091906	4.0390394497211	4.65673422966825	4.30949327489365	4.40857185110438	0.535713750643663	0.189032356686378	0.487836866980549
Merged-chr10-71356329-4	chr10	71356200	71356400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	L1MC4|LINE|L1	8537.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	5.4520386626915	5.37208984214514	5.42447412976932	5.80207060323046	5.20954998665085	5.47944589025852	5.39743780457555	5.50426629036071	-0.262246944648917	0.37207261470014	0.676037182941704
Merged-chr2-30472132-4	chr2	30472032	30472232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030244)	TTS (NM_030244)	2067.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	6.71542197421371	6.67736344569379	6.41424315208752	6.67295616240821	6.48674123820611	6.35608710768965	6.54881086940235	6.52961148798282	-0.212471918085984	0.313699545405848	0.625667449631329
Merged-chr15-74938913-2	chr15	74938796	74938996	+	609.333374	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16155.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	2.76660324227767	2.70964617921196	2.64960027912565	2.62941924228139	2.34235078602366	2.40045259831722	2.57782814822813	2.51928593388191	-1.28087796356802	0.0732936140628075	0.291532056740798
Merged-chr4-116507584-4	chr4	116507539	116507739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008389)	promoter-TSS (NM_008389)	90.0	NM_008389	16351.0	Mm.1350	NM_008389	ENSMUSG00000028696	Ipp	D4Jhu8|Mipp	IAP promoted placental gene	protein-coding	7.47894377984247	7.65943774684779	7.37333043186258	7.37483508592517	7.63297417621165	7.42259927178178	7.46170814447208	7.22960343893891	-0.0309502236228369	0.86966090152677	0.951055924778477
Merged-chr8-64880836-1	chr8	64880736	64880936	+	545.0	f0_c57.idr	Intergenic	Intergenic	-30912.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	3.86153705330447	3.43957813726425	3.56696319250426	3.56300137547987	3.65676088767556	3.43840424636226	3.55312132993649	3.81512491340245	0.0429977648833477	0.930727238021913	0.97509911797412
Merged-chr10-14545433-4	chr10	14545300	14545500	+	918.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001002268)	promoter-TSS (NM_001002268)	-364.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	4.69333729266624	4.67043855845234	5.20181197584222	4.83267125858958	4.91278817351633	4.82930979273082	5.14773608437814	4.77154361320393	0.123878330537725	0.718888672782811	0.887684154524562
Merged-chr16-42897321-4	chr16	42897222	42897422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040402, intron 1 of 3)	intron (NR_040402, intron 1 of 3)	-10323.0	NM_001285805	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	5.66453170189633	5.59681211501992	5.63995254379268	6.01220482614553	5.37199978437287	5.32285808458796	5.8866486392894	5.5832732994755	-0.332968005149955	0.257633901249026	0.569440392056059
Merged-chr10-79960032-4	chr10	79959942	79960142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175450)	promoter-TSS (NM_175450)	-110.0	NM_175450	216156.0	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	8.54896148689771	8.81333542161907	8.15723906328012	8.43919677363346	8.57839672320393	8.74241553030804	8.51096488382374	8.60052505054676	0.122677169240954	0.499482225886582	0.768387448003553
Merged-chr2-118246154-1	chr2	118246054	118246254	+	618.0	f1_c57bl6.idr	intron (NM_027759, intron 5 of 10)	intron (NM_027759, intron 5 of 10)	10812.0	NM_027759	71313.0	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	3.16745609364443	2.83759875509259	3.16786490537934	3.26800713122537	3.10794376587515	3.21867516428448	3.31723014533003	3.10685543896443	0.237455188510018	0.682204429803341	0.869682098720609
Merged-chr1-75521504-4	chr1	75521420	75521620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027886)	promoter-TSS (NM_027886)	-9.0	NM_027886	71728.0	Mm.312650	NM_027886	ENSMUSG00000026213	Stk11ip	1200014D22Rik|BB131189|LIP1|LKB1IP	serine/threonine kinase 11 interacting protein	protein-coding	6.28053613623877	6.24224959930148	6.31889430224782	6.18246742811863	6.58252476867683	6.27618291527699	6.48841997909868	6.21918008844707	0.239110450666868	0.287309563331906	0.59905112802161
Merged-chr16-33892186-4	chr16	33892096	33892296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	62531.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	5.18689232315299	5.30169653367299	5.28458623867713	5.54068272870683	4.95097556040777	5.48966053468187	5.48375279055052	5.53338885148932	0.0435312371441921	0.889978894759256	0.958812873663429
Merged-chr2-161512126-1	chr2	161512026	161512226	+	761.400024	f0_c57.idr	Intergenic	Intergenic	-403040.0	NR_126509	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	2.70178614191601	2.55769723228037	2.61802579114613	2.38713654975465	3.39466511634918	3.36327138493683	3.33296292939564	3.70352427052197	4.51420834751529	8.68782585613552e-10	5.63197410395146e-08
Merged-chr13-63239985-4	chr13	63239889	63240089	+	994.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110521)	promoter-TSS (NR_110521)	-40.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	5.5619593050425	5.57505118948734	4.93346175439844	5.2670384685442	5.18008413038914	5.03338654535396	4.98472838092779	5.00537669586658	-0.554826118965406	0.086456050404009	0.320676989169612
Merged-chr13-34278322-4	chr13	34278222	34278422	+	984.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	66860.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	5.83057504088662	5.12064187968159	5.09130955223952	5.58675777142576	4.91553386838454	5.0040158310761	5.06650024923414	5.12206901699196	-0.784121945218292	0.0189946094384811	0.123596060446261
Merged-chr5-123394626-4	chr5	123394522	123394722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177582)	promoter-TSS (NM_177582)	-176.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	8.26865260871902	8.49030682569385	8.39900263978376	8.01062302578178	8.15957633705701	8.31642250547869	8.19092613692751	8.02844710036961	-0.154654109136613	0.384843651514356	0.686289940705339
Merged-chr18-55548890-2	chr18	55548791	55548991	+	884.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-556300.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	2.85714066675591	2.98776588478285	2.85752313003597	2.55371792632407	2.67908480039634	2.77323130803907	2.65882163757276	2.66588297052862	-0.594993904990685	0.37063826039967	0.674860859945465
Merged-chr1-131181803-4	chr1	131181724	131181924	+	695.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018750, intron 3 of 5)	intron (NM_018750, intron 3 of 5)	18361.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	3.98023848069757	3.92759466414557	3.63038973566463	3.63994078034854	3.79217183958589	3.62642720593484	3.77676776493879	3.88779583877519	-0.0605652559738769	0.896541822128861	0.961155518163813
Merged-chr14-14098777-4	chr14	14098687	14098887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139227, intron 10 of 11)	intron (NM_139227, intron 10 of 11)	22117.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	5.40144982159446	5.35085972233026	5.18099035231842	5.20245129469354	5.80914670694061	5.76357455438777	5.63481670096032	4.91098969886252	0.521532192825362	0.106898496078345	0.360561439243734
Merged-chr7-4964469-4	chr7	4964367	4964567	+	837.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146329)	promoter-TSS (NM_001146329)	-119.0	NM_001146329	381836.0	Mm.297829	NM_001146329	ENSMUSG00000030433	Sbk2	Gm1079|Sgk069	SH3-binding domain kinase family, member 2	protein-coding	5.45628456269663	5.29625810294284	4.58009819976978	5.10847590885009	4.5341687391031	4.62151567370065	4.51397238719747	4.57718630275966	-1.20975961927029	0.00116990729488011	0.0152626157152257
Merged-chr11-51931964-4	chr11	51931859	51932059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-35672.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	7.99075180283023	8.11481731158876	7.81711691461318	7.95346846962317	7.83782769545472	7.87157504581026	8.25385334545134	8.08476936964402	0.0597803272304134	0.737175050355598	0.896349150297427
Merged-chr2-124703551-4	chr2	124703470	124703670	+	979.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	49989.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	5.0882866357998	5.70524624692407	5.5671781334066	4.96956414714644	5.95117273349587	5.34490509554556	5.92282398580027	5.66534309427104	0.664216125341602	0.043577832725119	0.212473047982819
Merged-chr14-65380660-4	chr14	65380575	65380775	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199029, intron 1 of 9)	intron (NM_199029, intron 1 of 9)	21999.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	5.0533981657734	4.79215412296265	4.66272836266298	4.64637081713738	4.40384350826221	4.67506263950971	4.13726598161382	4.49669626520271	-0.778907497671942	0.0406796517327845	0.203888823550815
Merged-chr10-52419565-4	chr10	52419470	52419670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	2023.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	7.40067061443205	6.73431568186749	7.77027032445341	7.67777257345622	6.89104227779265	7.19232709976031	7.14791330834088	7.00941810244351	-0.535119974328255	0.0341410179945384	0.182411555758835
Merged-chr2-180043191-4	chr2	180043080	180043280	+	996.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011969)	promoter-TSS (NM_011969)	697.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	4.89101227692595	5.1565979883215	4.85358209181228	4.89744356060285	5.23746255615902	5.02957844020341	4.97601072053448	5.21815700595242	0.331909540295634	0.288424188569504	0.60040784131807
Merged-chr10-98612115-4	chr10	98611954	98612154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-260187.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	6.16900689366001	6.54615903039773	5.98785037358678	5.5853240178521	6.31020069668366	5.90079683257533	5.74543875121414	5.48383686132897	-0.32460079316186	0.323301040043112	0.634756869516193
Merged-chr7-125601924-4	chr7	125601836	125602036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1493.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	5.51190876162725	6.04772888032043	5.87282785929218	6.30173500876901	5.91545867635569	6.11940009620701	6.39675021032347	6.02725345882937	0.213689386070754	0.45521258834274	0.738815095268454
Merged-chr3-75297631-4	chr3	75297565	75297765	+	852.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27587.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	3.78844175221016	3.64866913346145	3.49440884187758	3.96599608326524	3.93520888211264	4.0118715364797	4.09460819087967	3.88822255139156	0.644539227205311	0.169303073940216	0.461822724438512
Merged-chr11-50292475-4	chr11	50292381	50292581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175334)	promoter-TSS (NM_175334)	-145.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	8.94038587491044	8.8896046585055	8.67160247550262	8.79230937249837	8.90082857405812	9.06003683655541	8.87251143017202	8.78188271929302	0.0997448515787569	0.509048381144705	0.773874003577432
Merged-chr15-76904254-7	chr15	76904176	76904376	+	978.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012053, intron 1 of 5)	CpG	205.0	NM_012053	26961.0	Mm.30066	NM_012053	ENSMUSG00000003970	Rpl8	-	ribosomal protein L8	protein-coding	4.73631319237811	4.99980792902207	4.95251703099187	4.49520729565715	4.87942313157963	4.91129585529636	4.71491511683736	4.80982144081632	0.0757460801665113	0.828362486264122	0.934164461367054
Merged-chr8-120104871-4	chr8	120104763	120104963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3391.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	5.59509984006837	5.73507176315126	6.11754469708003	6.23634158819318	5.67230069112032	5.27396285360483	5.79673659558116	5.86822367718761	-0.465742602212261	0.119108482948294	0.381892914764711
Merged-chr1-36279349-4	chr1	36279257	36279457	+	972.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5932.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	5.04757603199075	5.10564957641225	4.90192399370582	5.04004998938626	5.52385012931181	5.15319925849595	4.87883183630326	5.37754816681429	0.448041556319789	0.162446480736276	0.451668741301125
Merged-chr13-114387993-4	chr13	114387866	114388066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010887, exon 1 of 5)	exon (NM_010887, exon 1 of 5)	128.0	NM_010887	17993.0	Mm.253142	NM_010887	ENSMUSG00000021764	Ndufs4	6720411N02Rik|C1-18k	NADH dehydrogenase (ubiquinone) Fe-S protein 4	protein-coding	5.43052540795319	5.33492666969191	6.22046573360968	5.5364729079902	5.31861361217603	5.51717682926812	5.24788333072935	5.69407110067304	-0.37810668452839	0.252372391358206	0.563645884616847
Merged-chr7-120679217-4	chr7	120679079	120679279	+	854.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164580, intron 1 of 2)	intron (NM_001164580, intron 1 of 2)	1559.0	NM_001164580	233812.0	Mm.276479	NM_001164580	ENSMUSG00000046096	Mosmo	Atthog	modulator of smoothened	protein-coding	3.80994008623742	4.04554172417715	4.18724162727587	4.06999757849662	3.87775699180683	3.9306221689062	3.74046102768065	4.05618375566664	-0.365687350180733	0.403482240676957	0.70091917823852
Merged-chr2-90940937-4	chr2	90940801	90941001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198683, intron 1 of 13)	CpG	504.0	NM_017368	13046.0	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	5.61065107991975	5.15305915797866	5.74776922667737	5.41591240775833	5.22902036893479	5.10983200784336	5.28892428747498	5.21720842611576	-0.496934920413003	0.100844361029459	0.348548158381852
Merged-chr17-65718789-4	chr17	65718675	65718875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 2 of 6)	MTC|LTR|ERVL-MaLR	53977.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	5.87794238539636	5.74198452633611	5.6589606947036	5.84308801000285	5.97931519995459	5.72431634914055	5.84908997855496	5.75732660350247	0.0850610234142106	0.734738610917513	0.89516046054632
Merged-chr9-106477153-4	chr9	106477058	106477258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145620)	promoter-TSS (NM_145620)	-151.0	NM_145620	27966.0	Mm.239997	NM_145620	ENSMUSG00000041506	Rrp9	55kDa|D19435|D9Wsu10e|Rnu3ip2|U3-55k	RRP9, small subunit (SSU) processome component, homolog (yeast)	protein-coding	9.04968385371204	9.38812415377882	9.11227952817408	9.15156837119495	9.26403686935736	9.28695740399802	9.32337174948943	9.02793528362677	0.0594692148832248	0.700966606611948	0.879454675268923
Merged-chr3-59224931-3	chr3	59224822	59225022	+	806.43335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357010, intron 1 of 3)	intron (NM_001357010, intron 1 of 3)	-14040.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	3.95174454414072	3.55305792566607	3.4266626876371	3.45385071696073	4.31811462689718	4.21663245779864	3.83560945636353	4.21068545354721	1.56780561302793	0.000900050300183246	0.0123892245826229
Merged-chr5-77468652-4	chr5	77468557	77468757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131050, exon 2 of 2)	non-coding (NR_131050, exon 2 of 2)	3169.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	5.79109638802812	5.54075235643232	5.39943588262875	5.85991666874805	5.34530397626763	5.87064092609237	5.43213029333037	5.54014820744827	-0.20502598729048	0.484114825960605	0.758269720910349
Merged-chr9-83831298-4	chr9	83831187	83831387	+	953.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3402.0	NM_009445	22137.0	Mm.1904	NM_009445	ENSMUSG00000038379	Ttk	AL022661|Esk1|Mps1|PYT|esk	Ttk protein kinase	protein-coding	4.10677317681	4.14558150849738	4.20037745233968	4.15063073458173	4.30676420877182	4.36995486809555	3.99165337045722	4.19779920788419	0.190810354186675	0.632257483950033	0.843788421300823
Merged-chr9-41135036-4	chr9	41134929	41135129	+	955.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	23033.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	5.40568606363208	5.89894197085634	5.43288562309644	5.48191101605563	4.60410536771057	4.99173525951079	4.74400136284985	4.36328417966796	-1.70495463827048	1.04173590361873e-06	3.63657282411367e-05
Merged-chr10-37338394-4	chr10	37338336	37338536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-199510.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	8.39306983667215	8.68865581060427	8.65660358483394	8.09730220353434	8.42761070584252	8.79093321811653	8.49538406884207	8.0704670687922	-0.00731797493672912	0.972400274417289	0.990065358290752
Merged-chr14-55730343-4	chr14	55730237	55730437	+	969.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8074.0	NM_001360387	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	4.60581348154009	5.19476178512778	4.84283267497875	4.44869373351474	4.82200629562769	5.01556058476744	4.78339499365146	4.6871466201859	0.0717147318549648	0.847620834200081	0.942343248956598
Merged-chr4-156216312-4	chr4	156216199	156216399	+	929.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172417, intron 1 of 3)	intron (NM_172417, intron 1 of 3)	372.0	NM_172417	74183.0	Mm.431343	NM_172417	ENSMUSG00000078486	Perm1	2310042D19Rik	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding	3.87834851670732	3.81785402314406	3.71694075072582	4.059924434123	3.73215644584332	3.71494837229687	4.21113375235282	4.14935659018392	0.230420937749525	0.623779736411276	0.839117589085407
Merged-chr8-41047451-4	chr8	41047355	41047555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 5 of 13)	intron (NM_001005863, intron 5 of 13)	-5524.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	5.55852589737873	5.22497206153266	5.53330987985135	5.94070605313274	5.37478612287632	5.27508475896923	5.50540975264117	5.19913201468578	-0.459603046189426	0.13910909144733	0.414728629115373
Merged-chr1-163926533-4	chr1	163926434	163926634	+	915.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	-2566.0	NM_001286002	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	4.12627208079149	3.9207860269227	4.2647984061191	4.34067411060547	4.46026026499565	3.98120404501776	4.06045158784703	4.56931900400146	0.288696130566625	0.507341127653531	0.772710503440438
Merged-chr7-90048919-4	chr7	90048827	90049027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110364, exon 6 of 6)	non-coding (NR_110364, exon 6 of 6)	19768.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	6.47734222214927	6.42634969462957	7.39561136851783	7.09944747651415	6.3200198512598	6.60296432270924	6.56194498321375	6.2436921753925	-0.689076278139339	0.0141325389304199	0.100624186108668
Merged-chr1-58774115-4	chr1	58774033	58774233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21241.0	NM_009812	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	5.70679473879828	5.21160796878669	6.03000783998922	6.24029068532859	5.30066240195547	5.27444744549997	5.4382114889014	5.72796313950062	-0.702717053328862	0.0360668742056752	0.188763972240393
Merged-chr2-59645191-1	chr2	59645091	59645291	+	1000.0	f0_balb.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	-1578.0	NM_001290659	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	3.79934849173747	3.42792329277014	3.55927629351321	3.71670049703309	3.36626558310734	3.23424133942482	3.59626067730862	3.50322386955671	-0.680334232606827	0.18898213486956	0.48779670955222
Merged-chr9-63602561-4	chr9	63602455	63602655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311098)	promoter-TSS (NM_001311098)	-62.0	NM_001311098	78250.0	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	8.23000719678858	8.29196162322834	7.39322701210767	8.11090485012048	8.26140802556428	8.27673175355465	8.10400948922064	8.00831435240877	0.144084074745571	0.509497283601015	0.774067760028004
Merged-chr6-128411292-4	chr6	128411187	128411387	+	753.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133927, intron 10 of 11)	B3|SINE|B2	11521.0	NM_001162858	60345.0	Mm.269883	NM_021717	ENSMUSG00000001520	Nrip2	AW491344|NIX1	nuclear receptor interacting protein 2	protein-coding	3.92622726880701	3.4368967702218	3.42889506487843	3.54963166380941	3.92882472921028	3.84891221863486	3.90921562029262	4.09575961891816	1.03227875448065	0.029101208470924	0.163990880777019
Merged-chr11-34043032-4	chr11	34042926	34043126	+	921.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	A-rich|Low_complexity|Low_complexity	-3902.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	4.56629037784996	4.92044915006059	4.80879784057006	5.01702322227896	5.04567700529848	4.69983219922974	4.50204628739396	4.87692451923748	-0.0892344291318515	0.804129865977399	0.924551911391182
Merged-chr10-13200637-1	chr10	13200537	13200737	+	829.0	f0_balb.idr	Intergenic	Intergenic	-7500.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	3.8927049539878	3.75370261105213	3.62187390508797	4.03362998077526	2.96329978442294	3.25518313338598	3.05773948283723	3.1388656179616	-2.9841281519775	2.89442402525514e-06	9.15654256416159e-05
Merged-chr4-142084038-7	chr4	142083949	142084149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027137)	promoter-TSS (NR_027137)	-249.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	5.87811702275018	5.98122047541731	6.14217256559424	5.63601698016701	5.73848896758808	5.69478051087807	5.60278361895693	5.75710978072542	-0.335202367414197	0.209422542570804	0.513944471391425
Merged-chr17-34355181-4	chr17	34355076	34355276	+	902.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_079835, intron 1 of 8)	intron (NM_079835, intron 1 of 8)	354.0	NM_079835	547431.0	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	4.89177470074818	4.15158243315447	4.27372111301726	4.18688108476226	5.05261399456635	5.03090614171486	4.86822617168589	4.63668268623901	1.09104736029105	0.00564095969276452	0.0519562461142968
Merged-chr2-53191983-4	chr2	53191892	53192092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022989)	promoter-TSS (NM_022989)	-92.0	NM_022989	65103.0	Mm.37623	NM_022989	ENSMUSG00000026960	Arl6ip6	2310057C01Rik|2610529A11Rik|Aip-6	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding	7.91405735500553	7.79146509803367	7.7377782844438	7.89414345400303	8.0667447986573	8.07841124911947	8.17024880933479	8.03978884373645	0.322375705060303	0.0408626966558462	0.204367281251642
Merged-chr8-70560300-4	chr8	70560187	70560387	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	20612.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	6.06887736258915	6.45812472379726	6.28029213477456	6.82150414737406	5.38568273799593	5.36613373806998	5.68284853344414	6.04461136795571	-1.26660843382802	2.53652885580654e-05	0.000627336995925829
Merged-chr14-66186751-4	chr14	66186647	66186847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 5 of 30)	intron (NM_001162366, intron 5 of 30)	27077.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	6.54505702505997	6.4137314338403	5.86688489003691	5.9821921602393	6.44151657713945	6.689964730218	6.41682332885972	6.42849929610219	0.406766858130372	0.110129275182043	0.366526005432396
Merged-chr18-20896443-4	chr18	20896339	20896539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029491)	promoter-TSS (NM_029491)	-361.0	NM_177038	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	7.86871880190177	8.03988616225525	7.61285695624939	7.88288314460545	8.15817836043466	8.20252559277909	8.12998055539286	8.00630278830068	0.338588299280691	0.0464410229800094	0.221399406265128
Merged-chr2-158773025-4	chr2	158772928	158773128	+	948.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027975, intron 1 of 3)	intron (NM_027975, intron 1 of 3)	4929.0	NM_027975	71878.0	Mm.85162	NM_027975	ENSMUSG00000027654	Fam83d	2310007D09Rik|BB104611	family with sequence similarity 83, member D	protein-coding	5.06084305423921	4.71027382639102	4.78251282474234	5.18627814263641	4.611990489899	5.03184863671479	4.79818073000534	4.99405780696982	-0.207541879862248	0.553501384673391	0.800255537231239
Merged-chr14-20546212-4	chr14	20546110	20546310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033571)	promoter-TSS (NR_033571)	-83.0	NR_033571	75602.0	Mm.437061	NR_033571	ENSMUSG00000084925	1810062O18Rik	-	RIKEN cDNA 1810062O18 gene	ncRNA	7.3894495016728	7.33446248532171	7.4960806054031	7.36426054881158	7.31947334843718	7.46393569007323	7.75881201985239	7.42492229285831	0.138049481732618	0.457624931414607	0.740689110061175
Merged-chr16-50430424-8	chr16	50430206	50430406	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 1 of 16)	CpG	2083.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	4.7466348968674	5.01077349977324	4.97502413449782	4.81396657698814	4.95965090438701	5.21520161813049	4.84316166362817	5.30525496689574	0.393221971236079	0.226254647730301	0.53478712794033
Merged-chr5-117483073-4	chr5	117482952	117483152	+	941.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	69050.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	4.90187029549388	4.77091070201578	5.49570847085632	5.28356572178786	4.32864443958836	4.25825175470341	4.43397234613853	4.75352485979774	-1.45555871325211	0.000195760226349922	0.00357282491060542
Merged-chr3-95106252-2	chr3	95106152	95106352	+	974.9166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293707, intron 1 of 14)	intron (NM_001293707, intron 1 of 14)	678.0	NM_008847	18720.0	Mm.296409	NM_008847	ENSMUSG00000028126	Pip5k1a	PI4P5K-I[a]|PIP5K1-alpha|PIP5KIalpha|Pipk5a	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	protein-coding	3.48593669583113	3.78432382981766	3.4319749933688	3.28565948755978	3.3924674028222	3.23078460042306	3.30394021905069	3.48445369859353	-0.506347064844061	0.346762988004798	0.654927235470945
Merged-chr16-4375254-3	chr16	4375085	4375285	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	45313.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	4.00783407616529	3.66923144596059	4.27368583628679	4.29880320139044	3.31305622833603	3.34011202271727	3.21306037220255	3.36477849656592	-2.66228232219541	4.20613562264743e-06	0.000127345183957644
Merged-chr10-45045496-3	chr10	45045408	45045608	+	625.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21706.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	3.30259253701192	3.61427321260263	3.4224937374317	3.41124139435756	3.54817755188611	3.41440524607825	3.51839521064677	3.67853979311215	0.339298206814723	0.495974047133542	0.766039627500674
Merged-chr16-17405903-4	chr16	17405791	17405991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023348)	promoter-TSS (NM_023348)	-109.0	NM_023348	67474.0	Mm.271992	NM_023348	ENSMUSG00000022765	Snap29	1300018G05Rik|AI891940|AU020222|BB131856|Gs32	synaptosomal-associated protein 29	protein-coding	8.496817361495	8.4787348845968	8.31720451528897	8.46713993514472	8.65365867700966	8.77147067240796	8.70084111936036	8.55075746541872	0.285718295686051	0.0543118515733343	0.243350326270827
Merged-chr11-100760074-4	chr11	100759982	100760182	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081194)	promoter-TSS (NM_001081194)	-304.0	NM_001081194	380728.0	Mm.297539	NM_001081194	ENSMUSG00000035355	Kcnh4	BEC2	potassium voltage-gated channel, subfamily H (eag-related), member 4	protein-coding	4.59807110656528	4.97960438718513	4.20257302737258	3.73457446158798	5.26119682390356	4.89877539123884	4.9447377263378	5.08890346190146	1.22590816270329	0.00620275401573786	0.0556052680209326
Merged-chr10-118121251-4	chr10	118121151	118121351	+	966.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20536.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	4.83119905143897	5.02865450447424	4.75398353757766	4.97490181528759	4.85989457693309	4.71656064663804	5.34903676006633	4.82879710516372	0.106570194973008	0.757032380844124	0.904554066545557
Merged-chr14-21853569-4	chr14	21853462	21853662	+	965.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176925, intron 2 of 2)	intron (NM_176925, intron 2 of 2)	-4652.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	5.09470720338849	5.4579388343579	5.22605485161021	5.44573680323862	5.03171259687135	5.61926572847999	5.03684893498754	4.87149076755682	-0.292468400168393	0.381328899954148	0.683563058438105
Merged-chr16-75917852-4	chr16	75917739	75917939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8573.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	6.52048409865281	6.48544730846973	6.02155759487432	6.18984514459283	6.1351740232295	6.42533876104911	6.32612356055722	5.76739193794608	-0.201353668277374	0.444292974990083	0.730742187924744
Merged-chr4-129829937-4	chr4	129829787	129829987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	9179.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	5.89485088251164	6.44629009214818	6.25805884439353	5.87231974705119	5.96720315961885	5.63661732000453	5.79433157306779	5.81980146564368	-0.501036527551375	0.0670613891235503	0.276204294434972
Merged-chr8-117157905-4	chr8	117157803	117158003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081151)	promoter-TSS (NM_001081151)	-232.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	8.12248836102434	7.87437517889225	7.91052253599674	8.00900162616493	8.00696945117016	7.97386950328626	8.13318722864051	7.98949752313743	0.0574526896193067	0.720460459793683	0.888295999056459
Merged-chr6-51546294-4	chr6	51546217	51546417	+	703.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 1 of 6)	intron (NM_001361577, intron 1 of 6)	1024.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	3.85394595142919	3.5673546646906	3.75650889994535	3.60435776787337	3.75934785750759	3.58916754194034	4.01139387210475	3.70245015066898	0.251492092725287	0.592438290531019	0.822184390287336
Merged-chr9-57433954-4	chr9	57433856	57434056	+	696.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152145, intron 3 of 6)	intron (NR_152145, intron 3 of 6)	5780.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	3.41496465032204	3.5562444470902	3.64465237129784	3.50451331449188	3.67824464835183	3.7073833004776	3.73036528761555	3.92317473496795	0.722405748544492	0.12280703684161	0.388421608708245
Merged-chr6-34511616-3	chr6	34511574	34511774	+	917.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35318.0	NM_007563	12183.0	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding	3.33735779533003	3.48174879710503	3.20864750278359	3.46860270959257	3.72901372525746	3.62842318625383	3.55290592285914	3.88395437707004	1.03719506467033	0.0403272895952773	0.202840320941816
Merged-chr13-94709840-3	chr13	94709718	94709918	+	804.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79125.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	3.53184608378402	3.29963533931928	3.5792184331041	3.16869890588898	3.19953044046196	3.32074719003662	3.06926967829307	3.07754080774666	-0.845057843764262	0.138258458440642	0.413646725009686
Merged-chr7-98770612-3	chr7	98770530	98770730	+	636.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	-64482.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	3.26867113250513	3.58318436129238	3.26909764535071	3.21415455094282	2.98195281066299	3.12089904664101	3.19737621490509	3.62391682780762	-0.321521455605247	0.58395910906045	0.817485282428486
Merged-chr7-17058524-4	chr7	17058403	17058603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162950, intron 1 of 14)	intron (NM_001162950, intron 1 of 14)	-1824.0	NM_016868	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	6.34658223028432	6.3981219590035	6.64411483159604	6.41889840396303	6.27863150316595	6.36740967593761	6.56562064778695	6.6683495438906	0.0291979734667798	0.896405749297306	0.961123944193462
Merged-chr16-95932379-4	chr16	95932273	95932473	+	856.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3296.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	4.39967258119391	4.13538625733685	4.35863937807733	4.48201769692625	3.94987781667458	4.03155519315089	4.20607553493237	4.81244541936431	-0.13938963517996	0.756104809258453	0.904159100355911
Merged-chr10-6718105-2	chr10	6718005	6718205	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40488.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	4.13079918322295	3.83657853375129	3.99285038460498	4.22411391518925	3.72851733007512	3.78099969056116	4.06882287819408	4.29244253767246	-0.208291444628725	0.650345748221438	0.853226674764141
Merged-chr12-85964683-4	chr12	85964594	85964794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	114347.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	7.19912091582539	6.9529611098467	7.33971845790731	7.39496762264146	6.32610776881965	6.69673626283132	6.77303014782584	6.80285989142762	-0.816679546074443	0.000219058930360475	0.00392064259595882
Merged-chr6-117900832-4	chr6	117900744	117900944	+	948.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166432, intron 1 of 3)	intron (NM_001166432, intron 1 of 3)	504.0	NM_001166432	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	4.73026153181643	5.14333669443667	4.55259229224887	4.66855109074458	4.85805490067336	5.26502380429087	5.12858358904515	5.29226226601853	0.679729084987792	0.0500226837991554	0.231827607957686
Merged-chr6-129234118-4	chr6	129234033	129234233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040268, intron 2 of 3)	intron (NR_040268, intron 2 of 3)	3912.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	6.55837522411293	7.04400714728533	6.84594827175733	6.7365188542615	6.97552569417476	6.71997010534885	6.65408548685568	6.74305036326335	-0.0293971288360992	0.891820940387162	0.95952862608333
Merged-chr6-122739625-3	chr6	122739542	122739742	+	684.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011401, intron 3 of 9)	intron (NM_011401, intron 3 of 9)	3103.0	NM_011401	20527.0	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	3.88816850590003	3.55706278660518	3.88879845718543	3.28592202466177	3.4957987051015	3.48144045523639	3.63813090857257	3.42660172387529	-0.497947953337897	0.349493751992924	0.657016500887525
Merged-chr10-40141127-4	chr10	40141038	40141238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	1116.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	7.04331424058271	6.88149289669944	7.55479084232198	7.45546936467688	7.02288791443522	6.5985582895369	7.19187650696012	7.12316923203854	-0.358143453202707	0.136100625313847	0.410504953990182
Merged-chr2-104122726-4	chr2	104122612	104122812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026634)	promoter-TSS (NM_026634)	-57.0	NM_026634	68243.0	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	7.17483813688803	7.10086129709988	7.06055281484799	7.2413409257972	7.0264803478978	7.05585962170114	7.21477544730045	6.75662036224611	-0.175322282862543	0.371738512897981	0.675721058891926
Merged-chr13-20133876-4	chr13	20133778	20133978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	43371.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.88977191799507	5.94455624165843	5.95632397536331	5.79041294190229	5.67731399717906	5.82000851147802	5.79203321540796	5.7935100499864	-0.199229723466311	0.418698859062913	0.712026139364466
Merged-chr14-61548769-4	chr14	61548668	61548868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310603, intron 2 of 3)	ORR1F|LTR|ERVL-MaLR	8118.0	NM_025697	66674.0	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	6.27339759598575	7.60585998661951	6.94544475434054	6.68063580922692	6.81391405970107	6.77486688527507	6.65896668498989	7.07285209608161	-0.185937413976998	0.531662573795211	0.787536862264926
Merged-chr14-103945897-4	chr14	103945812	103946012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	81230.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	6.41725258064017	6.53468763833487	6.94761894496637	6.98091456327415	6.31292474578609	5.98943490226736	6.23888958082868	6.22658427355559	-0.820854257806921	0.00089304488316135	0.0123142273805776
Merged-chr5-52833996-4	chr5	52833894	52834094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024213)	promoter-TSS (NM_024213)	-141.0	NM_024213	52206.0	Mm.272568	NM_024213	ENSMUSG00000029176	Anapc4	2610306D21Rik|APC4|D5Ertd249e	anaphase promoting complex subunit 4	protein-coding	9.27769298926003	9.4472975940078	9.42868723022857	9.51252807169898	9.15110413902047	9.1398896575971	9.34845310374318	9.12683023093965	-0.280072542172329	0.05047569409195	0.233087415970605
Merged-chr1-64367180-3	chr1	64367079	64367279	+	954.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-165625.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	4.15872689894208	3.68599293578323	4.15938235774303	4.32791285672201	4.08413790510858	3.88756066064114	3.75342737258731	3.82148595713557	-0.574542060590148	0.220740700806533	0.528759964418921
Merged-chr17-23676045-4	chr17	23675942	23676142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_181821)	TTS (NM_181821)	1407.0	NM_001161746	27279.0	Mm.28518	NM_013749	ENSMUSG00000023905	Tnfrsf12a	AI255180|C87282|Fn14|HPIP|TWEAK-R|TweakR	tumor necrosis factor receptor superfamily, member 12a	protein-coding	5.20210556785541	5.09445648317397	5.4704226653484	4.96153885624263	4.86499857555251	5.00103223578603	5.08500903735499	4.73740536997592	-0.495144938598815	0.13407662977797	0.40771736792268
Merged-chr7-143830157-4	chr7	143830073	143830273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007856, exon 2 of 9)	5' UTR (NM_007856, exon 2 of 9)	7006.0	NM_007856	13360.0	Mm.249342	NM_007856	ENSMUSG00000058454	Dhcr7	AA409147	7-dehydrocholesterol reductase	protein-coding	7.93165089680123	8.20464660904982	7.76203210877619	8.14786402083963	8.19737877016428	8.12504430674178	8.34574474785673	8.08434923868233	0.207017097193524	0.241038683972996	0.551619163882296
Merged-chr7-126272380-4	chr7	126272282	126272482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145587)	promoter-TSS (NM_145587)	-114.0	NM_145587	104175.0	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding	5.90574172761642	6.45631957241871	5.70155937599774	5.87998832425437	5.9973086700912	6.21714768052953	6.34350148983228	5.90257411771757	0.161740651453688	0.563309336292783	0.806221125771298
Merged-chr1-36556149-4	chr1	36556037	36556237	+	889.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304329, intron 1 of 14)	intron (NM_001304329, intron 1 of 14)	1420.0	NM_001304330	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	4.38910748826877	4.56018306257744	4.80967566509922	4.22535978405268	4.16924076990305	4.60879145910954	4.6854337610357	4.51577164729261	-0.00155997097550769	0.996905617773421	0.998785909880981
Merged-chr11-109269863-3	chr11	109269797	109269997	+	872.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165934, intron 7 of 16)	intron (NM_001165934, intron 7 of 16)	28284.0	NM_001165934	19739.0	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	2.7678332991839	2.9444396097829	2.9830143901743	2.61406055521694	3.41829739068515	3.16137624437021	3.2115256815499	3.47303367930743	2.10939375268742	0.000460316228669707	0.00721851703910137
Merged-chr5-143270051-4	chr5	143269950	143270150	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017467)	promoter-TSS (NM_017467)	-28.0	NM_017467	54201.0	Mm.6666	NM_017467	ENSMUSG00000046658	Zfp316	Emzf1|Mzf3|Znf316	zinc finger protein 316	protein-coding	4.63383177176792	4.65438274020538	4.47247875247742	4.49558818805673	4.62958631406804	4.80516527163035	4.40890483524141	4.38038162478427	0.0130032209670704	0.971460579186466	0.989698355367312
Merged-chr3-142494086-4	chr3	142493977	142494177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2857.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	5.72291024179494	6.02889602818194	5.64821438938618	4.89209989241409	5.89768280006197	5.96957977831751	5.48330629980758	5.59114689122446	0.206956042692077	0.55082678988462	0.798698284283594
Merged-chr2-25180649-4	chr2	25180533	25180733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025980)	promoter-TSS (NM_025980)	-125.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	7.08425170284695	7.50251824293147	6.94619621577291	6.95704883718949	7.28253765692227	7.09663781065327	7.26832674184232	6.85831207005833	0.00109033212190119	0.996086419830753	0.998543856884531
Merged-chr14-54405993-3	chr14	54405907	54406107	+	854.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	L1M2|LINE|L1	3465.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	4.02267925197628	3.86364990080971	4.3460626826542	4.0418409700856	3.86062289874896	4.09787040770633	3.6379714671221	3.97325112096584	-0.491430100774437	0.280114275847805	0.592203034097152
Merged-chr10-37376399-3	chr10	37376294	37376494	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-237468.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	3.72735884138803	3.64239441803358	3.9761359194275	4.2073268403039	3.82917528656095	3.66882494613948	3.95861887201031	3.72584104063994	-0.345051365639917	0.474759427850974	0.751855589262771
Merged-chr14-19722170-3	chr14	19722069	19722269	+	808.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29088.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	4.04941536274281	3.67321227687534	3.47190446081808	4.10873538028593	3.70706860516361	3.65310825230265	3.98896800147757	3.91392293422219	-0.117616400024175	0.814340455260255	0.928327532350968
Merged-chr17-59033656-4	chr17	59033566	59033766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20344.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	5.24971331940576	5.29511288129555	5.55349546164546	5.87838104719177	5.65807428165984	5.49461323187404	5.83258069782129	5.49454008534222	0.147517067639662	0.629548912170934	0.842301337901528
Merged-chr6-134133906-4	chr6	134133810	134134010	+	778.170837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	98210.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	4.30200173488329	4.34003610709406	4.72965574313175	4.19440477810854	5.16696842354925	4.62345995408727	4.90607622940982	4.48766180452425	0.950233439356407	0.0153135813650795	0.106390214793101
Merged-chr18-8638185-4	chr18	8638083	8638283	+	986.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-574673.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	4.90392928864024	4.55475090159198	5.42870454038103	5.16625674573675	6.21386093686865	6.00223469312602	6.29281360872643	6.30603847942553	1.91435063568599	1.06139095268616e-09	6.80006720263257e-08
Merged-chr1-16688823-4	chr1	16688711	16688911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159711, intron 1 of 4)	intron (NM_001159711, intron 1 of 4)	355.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	5.60977714110217	5.44957785785372	5.49323536308524	5.61667337773827	6.17287795796773	6.1899475666888	6.00537414869841	6.05197559510688	0.899102865061214	0.000261601774405391	0.00453606643127925
Merged-chr7-30184095-4	chr7	30183988	30184188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009944)	promoter-TSS (NM_009944)	-83.0	NM_009944	12865.0	Mm.423030	NM_009944	ENSMUSG00000074218	Cox7a1	COX7A|COX7AH|COX7AM	cytochrome c oxidase subunit VIIa 1	protein-coding	8.25461234588021	8.88498425671749	8.72531955681769	8.20441648692223	8.56094761888694	8.65626424566541	8.38327830384792	8.01623823729253	-0.153056430026076	0.488717763061567	0.761377570765248
Merged-chr10-70213866-4	chr10	70213789	70213989	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304739, intron 1 of 2)	intron (NM_001304739, intron 1 of 2)	9225.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	4.46330448301931	3.94634402367261	4.57719452701716	4.65770877169631	4.33033788313765	4.17325722791355	4.08456031811205	4.46111135319605	-0.411910803463121	0.335689398076279	0.645927430703489
Merged-chr7-43664197-4	chr7	43664089	43664289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4028.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	6.40987000932247	6.37006898177143	6.52532967330419	6.58558798742758	6.1474520852621	6.23580175397246	6.34368809487088	6.05368773516457	-0.428257756007995	0.0544887362482372	0.243652076731579
Merged-chr13-29979387-3	chr13	29979332	29979532	+	929.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010093, intron 1 of 6)	intron (NM_010093, intron 1 of 6)	4959.0	NM_001289920	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	3.22836593435957	3.54947546725891	3.48163631249168	3.70078667250134	3.60321125456931	3.65382634149948	3.8146997684889	3.53608483651043	0.441003613102316	0.389782296052844	0.690041185689413
Merged-chr18-46174093-3	chr18	46173988	46174188	+	834.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178872, intron 7 of 9)	intron (NM_178872, intron 7 of 9)	24730.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	3.71360773089771	3.2511039011154	4.19922700821959	3.99798566965118	3.53549867295174	3.59770052863114	3.80083647342152	3.86349974233674	-0.389063811466061	0.479101855491994	0.754919774468481
Merged-chr17-34129137-2	chr17	34129078	34129278	+	673.06665	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360530, intron 1 of 5)	intron (NM_001360530, intron 1 of 5)	3660.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	2.95083465158367	3.16502849250622	3.01003863991137	2.41644012998901	2.83586186187082	2.93524976686918	2.81538888542805	2.82372467704142	-0.277565804791785	0.691572596237468	0.874549631236956
Merged-chr1-164057028-3	chr1	164056901	164057101	+	901.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011345, exon 14 of 14)	3' UTR (NM_011345, exon 14 of 14)	-5075.0	NM_001164059	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	3.56764935824275	3.43121110403648	3.34484050827446	3.57537100557495	3.22198650372763	3.78530690709855	3.39164021776353	3.40258502729931	-0.0930559928462685	0.860378442744337	0.947136163196139
Merged-chr15-38078274-4	chr15	38078157	38078357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001112721, intron 1 of 58)	CpG	597.0	NM_001112721	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	6.1206686406925	6.42428360560108	6.16333475238949	6.25965760392718	6.4530554054187	6.39895441722119	6.26674148321771	6.05239485181439	0.0848386645854595	0.715980825560596	0.886371813543908
Merged-chr11-22813169-3	chr11	22813072	22813272	+	882.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46563.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	3.54893043422017	3.83420552135749	3.54937139026378	3.99508930812992	3.60482675722857	4.12684645452323	3.53661213245254	3.81903243688765	0.0848242324242432	0.868335866840233	0.950731730651165
Merged-chr11-103173601-3	chr11	103173507	103173707	+	646.899963	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019679, intron 1 of 26)	intron (NM_019679, intron 1 of 26)	2469.0	NM_019679	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	3.26085332445384	3.43761197377832	3.53502376780059	3.08099783050368	3.62882330756238	3.24463170548975	3.36465514957945	3.2596356972745	0.213647276770204	0.70026194786717	0.879054781621322
Merged-chr9-70239346-3	chr9	70239241	70239441	+	969.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	31991.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	4.38891686733721	4.12679390746777	3.8571927213885	4.11066907936924	4.39152319743114	3.52319269393685	4.04280321078291	3.85507284039162	-0.338346149138032	0.503677615581257	0.770507049123075
Merged-chr15-44619146-4	chr15	44619056	44619256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019480)	promoter-TSS (NM_019480)	-71.0	NM_001357690	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	8.93798561170345	8.9666232357568	9.23214493583748	9.18148926297618	9.40210513641505	9.4164182492056	9.6440585763903	9.18958425074341	0.413522177711872	0.0111748387471619	0.0853637972253631
Merged-chr5-64626547-3	chr5	64626447	64626647	+	820.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15848.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	3.65857576389087	3.63897120519084	3.19150330470676	3.44776056596464	3.48698813151606	3.56107946111043	3.69100340887156	3.500766703858	0.211584488615963	0.678085943247673	0.867974866493993
Merged-chr1-182923027-4	chr1	182922946	182923146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31742.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	6.34915924355919	5.48026419005067	6.59683112599546	6.67639829659037	5.82987313460088	5.72765283442222	6.11561999861248	6.12269238222957	-0.612757283621707	0.056568600089601	0.24908731121421
Merged-chr16-36747957-4	chr16	36747859	36748059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37003.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	6.82487941301135	6.84256735975027	6.91732110749762	7.16703080671629	6.21965513852656	6.43379215508495	6.8179842058274	6.53394900979211	-0.633600828828425	0.00592831670390445	0.0537954684685383
Merged-chr10-93069455-3	chr10	93069364	93069564	+	886.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347060, intron 2 of 67)	intron (NM_001347060, intron 2 of 67)	12132.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	3.04587697766835	3.1542264682746	3.12145163622884	2.98284096399643	3.92239129559162	3.68005774036711	3.90755132328147	3.75384892759932	2.61329838098668	5.29870845875254e-07	1.95620731009101e-05
Merged-chr7-109481013-4	chr7	109480908	109481108	+	795.104126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181853, exon 7 of 20)	exon (NM_181853, exon 7 of 20)	12730.0	NM_001170913	330627.0	Mm.183528	NM_181853	ENSMUSG00000031026	Trim66	Kiaa0298-hp|Tif1d	tripartite motif-containing 66	protein-coding	3.96000453923171	3.99615633610733	3.90453469487208	4.18338566951346	4.41494302762529	4.19123897327308	4.27776902047055	4.65895464224633	0.906335244908306	0.0295056054687628	0.165394510289893
Merged-chr16-22124470-3	chr16	22124394	22124594	+	992.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	38805.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	4.43620100111682	5.08009085031085	4.03633088968928	3.70545587022713	5.63426323008821	5.17488826464716	5.20941010328549	4.82130258974996	1.58204954660541	0.0268252939399122	0.155704017754316
Merged-chr13-119838103-4	chr13	119837982	119838182	+	877.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7865.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	3.97766064625565	4.42639130104229	4.79512243639201	4.25466858420629	4.36130597304228	4.21335509715654	4.30706035560942	4.1858840510218	-0.283785290963431	0.503717747300112	0.770542767941258
Merged-chr15-58211574-4	chr15	58211478	58211678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026346, intron 1 of 8)	intron (NM_026346, intron 1 of 8)	3314.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	6.31055399789406	6.24691269473983	6.85570085475354	7.06178322565645	6.26035626159766	6.38909290601834	6.42528102808637	6.64591243332146	-0.357585007672613	0.187038685097932	0.485282006509649
Merged-chr10-82974431-4	chr10	82974306	82974506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-11091.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	5.67388454129158	6.61872393592994	6.32599855743201	5.71763542981332	5.45119827724709	5.52611108025073	5.79532391400887	5.15603293373867	-1.04552645187467	0.00197598243371022	0.02319783170857
Merged-chr2-157500592-4	chr2	157500487	157500687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59491.0	NM_001291129	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	6.70375259633047	6.7287154601351	6.59831187827514	6.82141620822846	6.56747128516418	6.49246387379111	6.49994871849357	6.77098885185926	-0.196361254442518	0.343686332088441	0.652283741246884
Merged-chr2-34784276-4	chr2	34784169	34784369	+	901.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 6 of 7)	B3|SINE|B2	12179.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	4.88505484914447	5.84620430786746	4.2332190030837	4.10305936739165	5.14862551602918	5.23384702535579	4.78637081027006	4.80658202666403	0.042331699580029	0.956890018331355	0.984757116793997
Merged-chr15-75642455-4	chr15	75642342	75642542	+	939.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	25758.0	NM_011759	22701.0	Mm.87210	NM_011759	ENSMUSG00000047003	Zfp41	CTfin92|Zfp-41	zinc finger protein 41	protein-coding	4.74940716107009	4.22816243660315	4.45315899028074	4.56914877146727	4.45715405209423	4.3005894953855	4.34724597314244	4.53131542754047	-0.227518903501669	0.551152848751005	0.798837168776829
Merged-chr1-120531964-4	chr1	120531873	120532073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26949.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	6.31725469740643	6.75372336770518	6.92134180725428	5.97093009689747	7.15650090469932	7.21742336565019	6.97105961864758	6.53673005884158	0.657275040329509	0.0199311762345201	0.127751570751635
Merged-chr4-137730294-4	chr4	137730203	137730403	+	885.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001331215)	TTS (NM_001331215)	5842.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	4.22957047684129	4.34639136886323	4.0110142395684	4.50823059160612	4.5452332550938	4.67654440386946	4.35428445615276	5.08079750746318	0.864598772942862	0.0382256880813379	0.195960635140796
Merged-chr13-81136813-4	chr13	81136738	81136938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	172764.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	8.37538228293701	8.4266027325291	8.61328587718174	8.49690522559386	8.61977617049364	8.4582686153601	8.480782385724	8.68172321378393	0.106158120161544	0.488268851256685	0.76118893988362
Merged-chr2-120571402-3	chr2	120571338	120571538	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	ORR1D1|LTR|ERVL-MaLR	3767.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	4.31602685577772	4.95112636823758	4.35622996047533	3.82146899316252	3.4152080613117	3.77939370977576	3.57362807879913	3.94601823570752	-2.0100558592751	0.000225065355156761	0.00401042284714924
Merged-chr3-37420304-4	chr3	37420218	37420418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291044)	promoter-TSS (NM_001291044)	368.0	NM_021343	57815.0	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	7.81514979369702	7.50080170988221	7.43902614324351	7.63365697229391	7.99924167660602	8.00146992574253	8.13152365040241	7.82621972243822	0.506171683478277	0.00410297247802671	0.0408565073014858
Merged-chr19-4060838-4	chr19	4060737	4060937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-1390.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	5.59994801329813	5.8934896877637	6.00636269934125	5.98955996976688	5.87929497271917	6.50315835262084	6.26348803767806	5.98018768585301	0.43890093519547	0.103817429706287	0.35414921268187
Merged-chr4-137995553-4	chr4	137995462	137995662	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256195, intron 2 of 34)	intron (NM_001256195, intron 2 of 34)	2106.0	NM_172703	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	6.79704857751264	7.31458412999533	7.17565632298577	6.91403233637941	5.63022641833382	5.81806054642095	5.83430007187578	5.45621781513998	-2.06941149848901	1.81146935601506e-16	3.68395935119417e-14
Merged-chr10-93079629-1	chr10	93079529	93079729	+	950.5	f0_c57.idr	intron (NM_001347060, intron 1 of 67)	MTD|LTR|ERVL-MaLR	1967.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	2.8939942668191	2.81408750730603	2.89428660861391	2.33626346444241	4.01623901284154	4.22813762299235	4.03247964092625	3.97102851904057	7.93691911088571	2.89812411633309e-16	5.77830746432697e-14
Merged-chr10-117893340-4	chr10	117893246	117893446	+	992.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32113.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	4.64980268016158	4.72409769871692	4.42329356421004	4.65405988876964	4.9241497478424	4.8669034686794	5.07725061290825	5.09922005124284	0.756378113945067	0.0224335182356469	0.138292609522476
Merged-chr3-108286404-3	chr3	108286303	108286503	+	986.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019972, intron 1 of 19)	intron (NM_019972, intron 1 of 19)	2339.0	NM_019972	20661.0	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	4.41690742722321	3.77009081175288	3.57679896908304	3.92254462036058	3.25051003755298	3.36034603734554	3.50308576538068	3.88972848815024	-1.3231761294617	0.0196195048226273	0.126334063123737
Merged-chr5-147860597-4	chr5	147860507	147860707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025624)	promoter-TSS (NM_025624)	-21.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	6.20342913489781	6.10984586681711	6.30413066920403	6.49352906933929	6.48561268816765	6.67457247520188	6.64779314812109	6.63388766631839	0.449064070996722	0.0452641182233548	0.217781172841704
Merged-chr9-58280686-4	chr9	58280576	58280776	+	973.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30|LTR|ERV1	27512.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	4.8880107990375	4.96296664653911	4.41643384031094	4.48064527920897	5.31156293268852	5.02705960547886	4.8290067088094	5.17390990893112	0.806929179265685	0.0229887450287882	0.14034787566722
Merged-chr2-49764731-2	chr2	49764631	49764831	+	927.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 25 of 25)	intron (NM_008449, intron 25 of 25)	-22955.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	3.02198865808305	2.86580677618974	3.07950985301134	2.80904818595008	3.0036950890668	2.94122044943224	2.95206445697185	3.02078694381842	0.180730243340189	0.758759650636165	0.905296757937236
Merged-chr14-26675931-3	chr14	26675828	26676028	+	996.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6082.0	NM_178668	211948.0	Mm.290758	NM_178668	ENSMUSG00000043702	Pde12	2'-PDE|E430028B21Rik	phosphodiesterase 12	protein-coding	4.54317090911593	4.83132068603037	4.66093594353186	4.96915500866957	3.98086012304268	4.29634441598402	4.71037843084579	4.31899443809662	-0.962018943841381	0.018021544598578	0.119270620453945
Merged-chr11-60777407-4	chr11	60777321	60777521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175491)	promoter-TSS (NM_175491)	-56.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	7.79659515373792	7.94856237754616	7.79012458700779	7.71022688752103	7.88104328377348	8.15550120348675	7.7981548925508	7.6706090291413	0.0982879814824823	0.585244447965963	0.818041249764729
Merged-chr12-95745665-1	chr12	95745565	95745765	+	642.0	f0_balb.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	53439.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	3.92127714086955	3.34969312987136	3.7869064578427	3.58003496882211	3.52847252005495	3.75428413995328	3.45217067974623	3.68598413592939	-0.194263272577026	0.701487627466224	0.879751706170596
Merged-chr4-126259668-4	chr4	126259574	126259774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2731.0	NM_013718	27096.0	Mm.8392	NM_013718	ENSMUSG00000028847	Trappc3	1110058K12Rik|AI835942|AU019197|Bet3	trafficking protein particle complex 3	protein-coding	6.47050598914722	6.70180307437499	6.17668432765236	6.17718728966731	6.60180323044477	6.31194669341026	6.31848578156008	6.15135080707706	-0.0430312278175428	0.863787287673036	0.948819681316035
Merged-chr16-11174835-4	chr16	11174777	11174977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027502, intron 1 of 22)	intron (NR_027502, intron 1 of 22)	1516.0	NR_027502	106205.0	Mm.226860	NM_145931	ENSMUSG00000037965	Zc3h7a	A430104C18Rik|AI447294|AW556219|HSPC055|Zc3h7|Zc3hdc7	zinc finger CCCH type containing 7 A	protein-coding	4.87753276855602	4.6595415985667	4.65590991757475	4.43727485754061	4.71876205715315	4.86955428628327	4.67379372135956	5.00398383208016	0.355607840810685	0.309242870167298	0.621622697166796
Merged-chr16-45377561-3	chr16	45377457	45377657	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31496.0	NM_001358443	17470.0	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	5.92909799255635	5.32267789806578	6.10146263700705	5.58063925027939	3.52329197535891	3.92785455992131	3.91870558481902	3.85951090928848	-5.484591825093	1.24233169028371e-16	2.58869696265572e-14
Merged-chr10-79984398-4	chr10	79984350	79984550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003949)	promoter-TSS (NM_001003949)	-190.0	NM_001003949	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	5.01153679630573	5.51764720434211	5.28808717259038	5.51426616524301	5.23229376031257	5.46264575095355	5.29240384663226	5.51079693945642	0.0154064453202419	0.959302274197708	0.985513818852278
Merged-chr10-40276110-4	chr10	40276015	40276215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18403.0	NM_001359492	67371.0	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	6.37495046455986	6.6747020950288	6.76276831410844	6.98188238763739	5.95471428080736	6.05321240869437	6.32519855807429	6.37150696950594	-0.809873861877523	0.00104595894903405	0.0139446173503081
Merged-chr13-105377209-4	chr13	105377110	105377310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66483.0	NM_008308	15550.0	Mm.4716	NM_008308	ENSMUSG00000021721	Htr1a	Gpcr18	5-hydroxytryptamine (serotonin) receptor 1A	protein-coding	6.17695496032139	6.54841127017087	5.72224770382898	6.25822221006679	6.44854697173126	6.2058403433042	6.46375319844473	6.19362691528364	0.182671551477643	0.485872705916957	0.759652359848506
Merged-chr13-54475929-4	chr13	54475817	54476017	+	879.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-7077.0	NM_028597	73666.0	Mm.292487	NM_028597	ENSMUSG00000025872	Thoc3	2410044K02Rik|AL033344	THO complex 3	protein-coding	3.93814275415415	3.94046020716121	3.93867991596148	3.91085953662619	4.544446226973	4.5512002573621	4.61741035999575	4.63733025955393	1.59273391832729	2.97656601624135e-05	0.000721870502453298
Merged-chr9-56958877-3	chr9	56958765	56958965	+	916.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178374, intron 2 of 8)	intron (NM_178374, intron 2 of 8)	7941.0	NM_178374	66069.0	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	3.81519835959242	3.34857281544998	3.22853838242723	3.6883609201605	3.11676323798084	3.4718236486189	3.66419794837801	3.52677106036422	-0.289996438766264	0.60859630870736	0.830699381505368
Merged-chr4-150508865-3	chr4	150508769	150508969	+	953.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001085492, exon 9 of 23)	exon (NM_001085492, exon 9 of 23)	143305.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	4.63094131715173	4.71623995049335	4.46591202994023	4.8111446551374	4.76664544576329	4.63975992678074	4.53077925515665	4.41854770322656	-0.156226743212303	0.66483546894917	0.861094763889893
Merged-chr2-69856586-4	chr2	69856479	69856679	+	991.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4983.0	NM_001110145	20823.0	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding	6.00354021658638	5.82261738933162	5.72670233955108	5.77973115116618	5.12572362119151	5.34528681034724	5.51889817964276	5.51505129756017	-0.783430610016297	0.0047082395613282	0.0454533817626177
Merged-chr10-17406588-3	chr10	17406526	17406726	+	697.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	-310844.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	2.94954843038844	2.95725111313979	2.72267248551794	2.52070369727752	2.57110581471371	2.47173448338973	2.51446269075073	2.59080592671257	-1.33394463602217	0.0641135098851905	0.268997083413968
Merged-chr10-80963423-3	chr10	80963314	80963514	+	984.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	33323.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	3.61263635523355	3.43390418719252	3.99347351746746	4.14151365030725	3.84731493673716	3.48548731642302	3.292892485286	3.61115702880029	-0.759946718971857	0.175147572206228	0.469871414212748
Merged-chr5-125388639-3	chr5	125388597	125388797	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019639, intron 1 of 1)	PB1D9|SINE|Alu	1320.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	6.43532629516966	6.67997236570504	6.08837626865026	6.07002388416979	6.452045545669	6.72434140793224	6.22293974422738	6.19060946024883	0.114287622105251	0.664804166265953	0.861073297406066
Merged-chr11-102604278-3	chr11	102604209	102604409	+	851.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020510)	promoter-TSS (NM_020510)	-122.0	NM_020510	57265.0	Mm.36416	NM_020510	ENSMUSG00000050288	Fzd2	AL033370|AW456835|Fz10|Fzd10|Mfz10|Mfz10a	frizzled class receptor 2	protein-coding	3.6773662742697	3.43793468235405	3.44075665176976	3.25382725320199	3.95247590084281	4.13670475747859	3.81442777151873	3.82908987902096	1.51553776043848	0.00145389557421823	0.0181970868783681
Merged-chr4-41555433-4	chr4	41555304	41555504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027993, intron 1 of 5)	intron (NM_027993, intron 1 of 5)	14123.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	5.3905466348327	5.43092643131498	5.35595180370537	5.56221370306689	6.63976604067331	6.30170957640513	6.6957589425054	6.58251402497955	1.72785998768157	4.48926081531819e-12	4.32396611060261e-10
Merged-chr12-106034472-4	chr12	106034366	106034566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029843, intron 1 of 13)	intron (NM_001029843, intron 1 of 13)	24203.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	6.05108938385171	5.97926979084312	5.28666776924664	5.67094387717151	5.92067926203686	5.7446138567853	5.48304109194507	5.61905921571121	-0.112902808775664	0.705743958275834	0.881821802733794
Merged-chr10-16412458-4	chr10	16412360	16412560	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	620683.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	4.87959001868745	4.92278896836821	5.52426893296886	5.50739693243389	5.37983048397914	5.49916638236444	5.89991772315454	5.8261995919803	0.705727453634145	0.0363620811464072	0.189640722004698
Merged-chr11-70598705-3	chr11	70598592	70598792	+	817.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 2 of 30)	intron (NM_016713, intron 2 of 30)	-17202.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	3.36369959247109	3.32081068927429	3.20181764547359	3.27620335641431	3.44335338743834	3.05513979871461	2.93959489104442	2.946573796716	-0.628182342585637	0.300079378116168	0.612248910735458
Merged-chr18-58567998-4	chr18	58567898	58568098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081072, intron 1 of 9)	Lx7|LINE|L1	11758.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	5.90271342448974	5.9676083885027	5.94524933060672	5.64417110317733	5.63507317831723	5.59897108248978	5.26543679983572	5.2531904617881	-0.676604104923978	0.0169622492073522	0.114408787674606
Merged-chr8-13504114-1	chr8	13504014	13504214	+	875.6666869999999	f0_c57.idr	Intergenic	Intergenic	-9579.0	NM_019521	14456.0	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	5.50461224727697	5.19612364969446	5.82203716441306	5.70655807142315	4.51658267968248	5.22488339998386	4.90648259521883	5.30747550600312	-1.03759502158252	0.00333982211542382	0.0347246857075302
Merged-chr9-22307727-4	chr9	22307608	22307808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145612)	promoter-TSS (NM_145612)	-70.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	7.68558834456512	7.87815578511541	7.51864344697468	7.85513971660867	7.66084431169875	7.67707463285121	7.78243988614554	7.67333147204686	-0.0684240191064466	0.694582070023303	0.876020808682138
Merged-chr3-100431898-4	chr3	100431801	100432001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040543, intron 2 of 2)	intron (NR_040543, intron 2 of 2)	5496.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	6.13498483824621	5.97622439671028	5.83150899165938	6.450587827224	6.37213128545992	6.48615497714695	6.49355172030545	6.25082519373163	0.391328742525089	0.123944758370405	0.390687220687072
Merged-chr8-104344309-7	chr8	104344170	104344370	+	881.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024217, intron 2 of 4)	intron (NM_024217, intron 2 of 4)	3676.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	3.75322541364446	3.66022860019948	3.58383595862195	3.6665589044239	3.80438020952539	4.02603537049943	3.88703569318379	4.03585303333538	0.781544648834161	0.0785416764480681	0.303250441707962
Merged-chr2-27749981-4	chr2	27749896	27750096	+	792.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 5 of 9)	intron (NM_001290481, intron 5 of 9)	39413.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	4.72175779771168	4.5648756043497	4.10743109814803	4.46679390531717	4.11998400184761	4.06485678268495	4.09051202138735	4.65276664269478	-0.541617189126758	0.208305668865471	0.512565741493255
Merged-chr18-36515822-4	chr18	36515720	36515920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010415)	promoter-TSS (NM_010415)	-15.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	7.5327842219611	7.77996984194595	7.76240793752257	7.74544389206244	7.675049413347	7.77468257044779	7.61179093138907	7.44251438749722	-0.105084051914592	0.547672450583698	0.796971609095299
Merged-chr10-18048427-4	chr10	18048328	18048528	+	930.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-7512.0	NM_009048	19707.0	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	5.34527632773199	5.6089151699124	5.37441955944391	5.67581948189497	4.72856609738312	4.67908671628155	5.29066324320917	5.09113345716774	-1.02448074822751	0.00181945581821739	0.0217147963925043
Merged-chr16-91538205-4	chr16	91538119	91538319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8875.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	5.95585201567772	5.85266138569164	6.38371109735428	6.38138974959875	6.75251841654461	6.59638263213861	6.77544322578784	6.9852006189297	0.885017481795237	0.000307853101714141	0.00517907726941877
Merged-chr6-97486180-4	chr6	97486081	97486281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	1639.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	6.86108012214891	6.96460373492408	7.416181802191	7.10324801887867	6.96222695597948	7.08054943992877	7.20425396598811	7.33626858267386	0.0640825156068389	0.762517000733849	0.906975368428852
Merged-chr2-130450343-4	chr2	130450232	130450432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163688)	promoter-TSS (NM_001163688)	54.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	6.34236419034617	6.47130154443309	6.62506753937875	6.51452482011369	6.25700609349687	6.48239600199175	6.48336610025128	6.41105947021328	-0.132028117505933	0.540986541067197	0.793009827469438
Merged-chr19-46008359-2	chr19	46008259	46008459	+	903.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152221, intron 1 of 1)	intron (NR_152221, intron 1 of 1)	4881.0	NM_176785	20170.0	Mm.101110	NM_176785	ENSMUSG00000074811	Hps6	5330434M19Rik|BLOC2|ru	HPS6, biogenesis of lysosomal organelles complex 2 subunit 3	protein-coding	2.70606876578035	2.75278146708594	2.64586526542512	2.380030904329	2.49949610630047	2.54893870921679	2.4384861506692	2.58107517059271	-0.561725177452401	0.424193128896291	0.71604841147627
Merged-chr18-67504158-4	chr18	67504057	67504257	+	938.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194355, intron 8 of 14)	intron (NM_194355, intron 8 of 14)	39308.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	4.87146315410622	4.78575580731024	4.70249402355488	5.17515332118443	4.22005133623545	3.99350309388652	4.39877482620382	4.22116552314681	-1.57984783033846	6.44648715417408e-05	0.00140108247067773
Merged-chr9-90108499-4	chr9	90108393	90108593	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 2 of 12)	PB1|SINE|Alu	6327.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	5.58088122042399	5.12937807942146	5.73475833243338	5.88412864913278	5.36600044969142	5.27781499369761	6.14304385251044	5.86686748405257	0.152620236531428	0.656558161455231	0.856717390180484
Merged-chr4-141618677-4	chr4	141618562	141618762	+	983.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145987)	promoter-TSS (NM_145987)	-29.0	NR_151462	213989.0	Mm.34891	NM_145987	ENSMUSG00000043085	Tmem82	-	transmembrane protein 82	protein-coding	4.96118095546164	5.24410280903869	4.99721376655604	4.80304984800019	4.89128128371571	5.23769155300049	4.8653751023408	5.21594423865125	0.106508767325678	0.746815299387324	0.900253617240193
Merged-chr10-10558239-4	chr10	10558148	10558348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026405)	promoter-TSS (NM_026405)	-41.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	8.68701566244609	8.78952257960057	8.71855438061105	9.13134226391611	8.73823063005549	8.44553405177469	8.80424026551015	8.53527920069257	-0.263753273503731	0.136862229850543	0.411427913943067
Merged-chr10-57463518-4	chr10	57463402	57463602	+	925.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22851.0	NR_045353	74928.0	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA	4.73860907841136	4.69522918312441	4.57806182781819	4.8018389948267	5.04514022881468	4.66663891746033	4.95561277769039	4.48643486119569	0.220663321120886	0.53479609913883	0.789412321200364
Merged-chr4-66861902-3	chr4	66861808	66862008	+	947.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34357.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	4.09101344460058	3.6735792817854	4.00887808699817	4.31768873206522	3.4756286416951	3.3978036162617	3.4759139592744	3.60810379227609	-1.749196187097	0.000711194338157852	0.0102459457569656
Merged-chr7-114066914-4	chr7	114066759	114066959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	50922.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	6.1936349740229	6.54460714574451	6.77595487187673	6.40677334548261	6.78162023602326	6.77612081485996	6.94237275282349	6.4088138113349	0.359965109803019	0.126874565917342	0.396202676178328
Merged-chr9-110681348-4	chr9	110681228	110681428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	24825.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	6.08815567876077	6.03076176911581	5.59164799926586	5.94829383587874	6.49883706895221	5.99218599985412	6.21197130109696	6.16459392221257	0.480469311950477	0.0619810542265999	0.263340861863257
Merged-chr15-53318158-3	chr15	53318057	53318257	+	823.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	28026.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	4.41185596421532	4.56903707992657	4.20768143962384	4.63026800083623	3.49472317578486	3.71992345120734	4.09735308619337	3.8501767943991	-1.82294259895977	0.000106946039113779	0.00214829344728395
Merged-chr17-27565837-4	chr17	27565740	27565940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001002895)	promoter-TSS (NM_001002895)	-113.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	7.7847193077568	7.86352600659112	7.56335829651526	7.83047928056228	8.00216473865008	8.0321392463723	7.95673620707229	7.84197188982982	0.246510932559905	0.139923985572836	0.415958856554476
Merged-chr9-31931415-2	chr9	31931315	31931515	+	907.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12B|LTR|ERVK	-18130.0	NM_013800	12023.0	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	3.23496565304661	3.77810767384001	3.23534904047906	2.98620685905395	3.37838014098529	3.64501211811849	3.51153075686374	3.47123194625275	0.544738923357941	0.34283126592448	0.6516462545027
Merged-chr16-30388168-3	chr16	30387985	30388185	+	964.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128096, intron 1 of 33)	CpG	445.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	4.22190207970493	4.61563251598252	4.62450722033039	4.47479061144611	4.48125198042299	4.3516335122523	4.44068728948935	5.12043277272678	0.312240381991653	0.44098134151765	0.728341630496678
Merged-chr8-75108741-4	chr8	75108691	75108891	+	963.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008566)	promoter-TSS (NM_008566)	-718.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	4.69162650893331	4.91965151969817	4.48709502682984	4.60813538037632	4.71795071977573	4.70535726516642	4.59292418835265	4.57027514515599	-0.0724666115043008	0.836674919535419	0.937953980810766
Merged-chr2-11490782-3	chr2	11490686	11490886	+	760.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133232, intron 3 of 14)	ID4|SINE|ID	11304.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	3.03373733845094	3.31912011252248	3.4943124245693	3.78773863126866	3.47924487000053	3.55278006258458	3.58606482403393	3.83173991767472	0.536148920009652	0.362173071438053	0.667404354318051
Merged-chr14-50908385-4	chr14	50908311	50908511	+	942.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15156.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	4.7345204999496	4.77111885315311	4.84170616749121	4.78054428667659	4.20289555512149	4.71089928990322	4.55699188263476	4.76857598227631	-0.471067378066333	0.197296894561066	0.498682421006431
Merged-chr13-34691260-4	chr13	34691159	34691359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38336.0	NR_105041	101056149.0	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	-	predicted gene 15908	ncRNA	7.25198327752953	7.66638815234871	7.34494234319414	6.9029565435548	7.09067188424901	7.22419067097066	7.1408984861675	6.6675064894312	-0.362328948764815	0.129490107538701	0.400424726930976
Merged-chr2-52950376-4	chr2	52950262	52950462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	92494.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	6.04974085091243	5.94998923201519	6.49616821483591	6.73315036729727	5.95320606378705	5.43477152362368	6.25196563758026	5.73324469822767	-0.735596581634747	0.018048744311242	0.119361848121332
Merged-chr11-115192349-4	chr11	115192263	115192463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 2 of 9)	intron (NM_001033393, intron 2 of 9)	4876.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	6.21656016036014	6.04467415129695	5.96277916912374	6.35725752328845	6.40116892331612	6.09257156359175	6.18585699802805	6.32354105176619	0.143032193817746	0.552037949487736	0.799304947428348
Merged-chr11-22287164-4	chr11	22287063	22287263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153078)	promoter-TSS (NM_153078)	-368.0	NM_001252515	216565.0	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	9.06118306623576	9.04953608033945	9.0922967405101	9.29957741870599	8.79549179049899	8.68491206663395	9.00227064811032	8.72147269690636	-0.405032326755402	0.00913572256379241	0.0739533260966883
Merged-chr4-120952274-4	chr4	120952133	120952333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005788)	promoter-TSS (NM_001005788)	-532.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	5.14578790586444	5.27695338892582	5.11358998824142	5.09376212417935	5.1641784273321	5.25426058254277	5.15355301461004	5.32499564115495	0.125158952438415	0.668120873887754	0.862837936034118
Merged-chr3-105878072-4	chr3	105877979	105878179	+	937.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	7221.0	NM_001174169	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	4.72645823759118	4.90128394490348	4.94978513905535	4.63530353595816	4.64090398387667	4.77891517113808	5.37407873181772	4.94640918851755	0.321601820088818	0.37197869147643	0.675938343451834
Merged-chr3-136672000-5	chr3	136671954	136672154	+	853.4799800000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	1988.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	4.1185017018634	3.7225282150135	4.07113917595824	3.99708342333378	4.27661435746007	4.29163774292562	4.10116168074171	4.44607449988322	0.765185724411719	0.0646988935389635	0.270432940466844
Merged-chr12-86769183-4	chr12	86769068	86769268	+	786.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34799.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	3.64342565095937	3.4050642582749	3.46226044075795	3.61370998326033	3.51941726678584	4.2411558448419	3.83592179950884	4.07144696927556	1.16836496217357	0.0206503399275827	0.130852892878609
Merged-chr19-32388551-4	chr19	32388456	32388656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033198)	promoter-TSS (NR_033198)	-44.0	NM_144792	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	7.50554065111096	7.65190792873905	7.48798912064622	7.47358570673571	7.76285850106003	7.52483600537816	7.73732847751986	7.60911753989591	0.180905841190748	0.29142800945823	0.60371229002408
Merged-chr5-124095360-3	chr5	124095245	124095445	+	860.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019875, intron 1 of 11)	intron (NM_019875, intron 1 of 11)	453.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	3.78902169534672	3.63569621513947	3.58248023329161	3.15428001834394	3.69881969123358	3.75676134919262	3.7728641946435	3.68801725428527	0.567478036616425	0.267974637672462	0.57983240317632
Merged-chr8-4335828-4	chr8	4335725	4335925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033527, intron 2 of 5)	intron (NR_033527, intron 2 of 5)	10615.0	NR_033527	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	6.93409656906804	6.68436704663303	7.03524654012681	7.24522078237476	7.07797042331934	6.88517436832889	6.90025086145852	6.83604510805282	-0.0961321331949827	0.655329488623336	0.856041432753174
Merged-chr19-6236330-4	chr19	6236232	6236432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198168)	promoter-TSS (NM_198168)	-492.0	NM_198168	225849.0	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	6.6927924867375	6.82992438528624	6.34171111021795	6.59431092320027	6.69596651628544	6.69827789370286	6.71678707864019	6.33718363023373	-0.00617060231740183	0.978106885609916	0.992205923377531
Merged-chr4-120381180-4	chr4	120381083	120381283	+	839.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24098.0	NM_001159630	29871.0	Mm.427014	NM_013883	ENSMUSG00000000085	Scmh1	AI315320|AI851618|Scml1|Scml3	sex comb on midleg homolog 1	protein-coding	3.9445610166905	4.50540280780616	3.89070406853164	4.03442688302231	4.21406351690369	4.26974444972526	4.2988281435597	4.18809463763542	0.308389746850579	0.471011386478992	0.749675166007454
Merged-chr13-101734400-2	chr13	101734300	101734500	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	33817.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	3.49004573628848	3.46856789408825	3.43201678065875	3.85161160175478	3.78224506892199	3.35063247069622	3.58575523796354	3.69879087693802	0.100351868812378	0.848189683850782	0.942625689889496
Merged-chr18-25668240-2	chr18	25668140	25668340	+	772.583313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	11508.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	2.80700067521785	2.81621171870128	3.03272860657678	2.78981452268982	2.53155487456155	2.55998507379943	2.85651414714194	2.7429188140525	-0.906365213125842	0.175681590575308	0.470516510700699
Merged-chr11-78550809-4	chr11	78550717	78550917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133706)	promoter-TSS (NM_133706)	-82.0	NM_133706	69071.0	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	7.99803341590615	7.98942199811719	7.6856943720097	7.69183284153622	7.93801574424115	8.02232662131127	7.88635592164406	7.58348317268389	0.0296458875290197	0.87351836130673	0.952619493264257
Merged-chr9-116096903-3	chr9	116096801	116097001	+	815.1777950000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	78462.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	4.00422402964	3.80018437882022	4.04949695188965	4.06824370894133	3.48562615029842	3.81760433023686	4.03121391421971	3.80653815297658	-0.55978814575235	0.231553275834642	0.54111200698099
Merged-chr3-65957837-2	chr3	65957737	65957937	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019937, exon 1 of 11)	exon (NM_019937, exon 1 of 11)	412.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	5.97068484419901	6.37200163747938	6.45511143042548	5.99932346792713	6.37929464642703	6.38313886880721	5.98729974868002	6.24153253388853	0.08027845270939	0.750759166760889	0.901855648088396
Merged-chr9-46168934-3	chr9	46168837	46169037	+	954.305542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 4 of 24)	intron (NM_027498, intron 4 of 24)	-59693.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	3.69204572739929	4.19277602931274	3.75647276889582	3.12609753942839	4.73564719007487	4.35981088057086	4.55086832083577	4.22543794674331	1.89295567694854	0.000283254884144212	0.00484309377816499
Merged-chr9-89827146-4	chr9	89827028	89827228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040735, exon 1 of 6)	non-coding (NR_040735, exon 1 of 6)	609.0	NR_040735	74700.0	Mm.159306	NR_040735	ENSMUSG00000098627	4930524O08Rik	-	RIKEN cDNA 4930524O08 gene	ncRNA	5.08564122030649	4.70247528776668	4.91979971220079	5.03367106316008	5.09870433916899	5.09289335171127	4.74657429810878	4.88041155354242	0.0402414908907112	0.902853280781956	0.963956578622192
Merged-chr6-124930905-4	chr6	124930799	124930999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170341)	promoter-TSS (NM_001170341)	-489.0	NM_145385	30853.0	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	7.34479194476106	7.2664941937133	6.90988925373052	7.27902022394157	7.18755425994374	7.46158987468401	7.39571807537528	7.06359881298941	0.0917207574034557	0.649077233000725	0.852536691167674
Merged-chr1-162000014-4	chr1	161999912	162000112	+	992.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038619, intron 20 of 20)	intron (NM_001038619, intron 20 of 20)	-4957.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	5.39262293010998	5.28628643965233	5.05483483596855	5.07823932783496	5.20306787024228	5.26432772154416	5.13135147589038	5.27714795090697	0.0330249450258963	0.911560603832528	0.966959839945687
Merged-chr9-23581181-1	chr9	23581081	23581281	+	635.25	f0_balb.idr	Intergenic	Intergenic	358105.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	3.86355718162366	3.75153235372791	3.7152462370229	3.68966001532541	3.97783111638117	3.72218974024445	3.7004113696477	3.54513929204262	0.013937231891515	0.976278786908717	0.991528225629167
Merged-chr5-138173337-2	chr5	138173237	138173437	+	843.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_021392, intron 4 of 14)	RLTR49|LTR|ERVK	1316.0	NM_021392	11781.0	Mm.113205	NM_021392	ENSMUSG00000019518	Ap4m1	4930443L05Rik|Ap4m4	adaptor-related protein complex AP-4, mu 1	protein-coding	2.92677988598992	2.95593057106158	3.38357891367722	2.85422145149905	3.09248953568982	3.22983139867565	3.10575045978072	3.11594528486209	0.390246894396342	0.509558012323548	0.774103166414348
Merged-chr11-17004323-4	chr11	17004209	17004409	+	880.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	4409.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	4.24099335188797	4.46185800802453	3.95006799878323	4.1692727930666	4.17536620170925	4.12683913031875	4.3058383602826	4.00116174002292	-0.153073820226607	0.71268176316325	0.884980639210708
Merged-chr12-4720044-3	chr12	4719928	4720128	+	736.788879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029107, intron 6 of 7)	intron (NM_029107, intron 6 of 7)	18355.0	NM_029107	74855.0	Mm.269534	NM_029107	ENSMUSG00000079177	Fam228a	4930417G10Rik	family with sequence similarity 228, member A	protein-coding	3.3846641840342	3.87317866445061	3.5610816729614	3.7975901610786	3.5407679801272	3.56054065857935	3.54738514299881	3.55916639831414	-0.404705998511613	0.418097986130442	0.711633385656729
Merged-chr5-144003015-4	chr5	144002922	144003122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177682, intron 7 of 14)	intron (NM_177682, intron 7 of 14)	11831.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	6.18884511817638	6.1321729735676	5.97770112322678	6.32373618512572	6.30833430625749	6.03468373614407	6.13871826579161	6.29748837654856	0.0475919722994829	0.840079434738026	0.939199492440635
Merged-chr2-18767209-4	chr2	18767123	18767323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6361.0	NR_126079	100041479.0	Mm.393659	NR_126079	ENSMUSG00000092353	Gm3363	-	predicted gene 3363	ncRNA	5.68373346688582	6.01513967240473	5.97570631222382	5.89790806389303	5.96828805665395	6.10646499971042	5.75997586281481	6.07526559509988	0.128651600791106	0.604625299870314	0.828509474255204
Merged-chr12-73545947-3	chr12	73545791	73545991	+	861.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178715, exon 1 of 1)	exon (NM_178715, exon 1 of 1)	504.0	NM_178715	238257.0	Mm.251196	NM_178715	ENSMUSG00000034435	Tmem30b	9130011B11Rik	transmembrane protein 30B	protein-coding	3.30633697266466	3.36824284228541	3.46304634325119	3.28630179660674	3.21605793828548	2.8732311233303	3.29392164107543	3.24842107454389	-0.69103403697163	0.227206978843972	0.535909590131417
Merged-chr8-68196200-4	chr8	68196103	68196303	+	910.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80325.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	4.84335456573184	4.84005682641508	4.7704910988282	5.2689471595102	4.61140770774758	4.55668527216014	4.58823416425361	4.94381625143234	-0.585362678039025	0.105636778698875	0.357916996906283
Merged-chr16-44139775-4	chr16	44139692	44139892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028108)	promoter-TSS (NM_028108)	1.0	NM_001347239	72117.0	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding	8.21222400978753	8.49539202684172	8.49774207876309	8.15942955387891	8.69226367752693	8.71417609794116	8.46817033440498	8.43731869357354	0.302131713149183	0.0772737542332219	0.300626833874426
Merged-chr5-123471029-4	chr5	123470932	123471132	+	907.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16B2|LTR|ERVL	11069.0	NM_029594	76399.0	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	4.42091051328653	4.61873158353821	4.17651556435595	4.61775687878222	4.6047341262643	4.79825793760956	4.6431282056299	4.50520440686982	0.339271473478009	0.36228072873259	0.667497928930861
Merged-chr2-113447486-3	chr2	113447375	113447575	+	851.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	6411.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	4.24899499347142	3.94568605777459	4.51980746169041	4.86917536433497	3.64832468744529	3.71751782032586	3.94540279168681	4.06250465981069	-1.58008222584304	0.00131512549495729	0.0167999493190173
Merged-chr19-60226659-4	chr19	60226552	60226752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358271)	promoter-TSS (NM_001358271)	49.0	NR_152391	76539.0	Mm.290183	NM_029648	ENSMUSG00000057858	Fam204a	2310065H12Rik|2610015K05Rik|D19Ertd737e	family with sequence similarity 204, member A	protein-coding	7.46694582973999	7.44581665587992	7.39233456246145	7.62693424910199	7.21676391581808	7.22297472490195	7.27509895303115	7.05304983768241	-0.402237284994847	0.025887686005958	0.152047165790749
Merged-chr1-180849730-4	chr1	180849640	180849840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1411.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	6.9373335738013	7.03324257226334	6.88544084997686	6.91137444249086	7.16967101210428	7.04842907786596	6.76723498936921	6.93364358090379	0.073603078178923	0.710187082298009	0.884017407313562
Merged-chr1-182341139-4	chr1	182341060	182341260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175127, intron 1 of 4)	CpG	446.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	4.74547585061325	4.31329118606421	4.74626190825747	4.28220790645323	4.73270704818447	4.99041410161347	4.75989143821872	4.94865049038215	0.718065909928957	0.0487022897262244	0.227944521332386
Merged-chr17-81706330-4	chr17	81706228	81706428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	32059.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	5.82316556041869	5.1945577539043	5.5847039496637	5.58159424246561	5.67350894997398	5.46700776174511	5.58248492568427	5.63241757628619	0.058075805108648	0.837705060484698	0.938459467190736
Merged-chr6-108055264-4	chr6	108055162	108055362	+	771.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9783.0	NM_001276356	74729.0	Mm.56539	NM_178391	ENSMUSG00000034639	Setmar	5830404F24Rik|Etet2	SET domain without mariner transposase fusion	protein-coding	3.64829677229901	3.54896656664805	3.37889193171235	3.61576181500023	3.5351416741298	3.22422385095701	3.63334740539973	3.49188979751312	-0.238236033873839	0.641266360868862	0.84863530101299
Merged-chr14-21273729-4	chr14	21273633	21273833	+	927.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 6 of 10)	MIRc|SINE|MIR	197581.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	4.14569554871909	4.20232335442666	4.72585812378565	4.83568263235166	4.51356463409401	3.91421750719838	4.52626749183246	4.42447037633617	-0.347561003958635	0.442117997865668	0.728953187628121
Merged-chr12-100841404-4	chr12	100841292	100841492	+	909.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001361020, exon 6 of 14)	exon (NM_001361020, exon 6 of 14)	58132.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	4.61504628577282	4.41722150916185	4.24074805828288	4.56087255675891	5.11570840153747	4.52584216741828	4.71001876149938	5.13838834081483	0.912784229943087	0.0151939539522012	0.105852055237714
Merged-chr5-66090250-4	chr5	66090149	66090349	+	834.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	7930.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	4.22980144883566	4.58607638324948	4.04190553787436	3.98851480647964	3.96268722644922	4.26562803783451	4.02500002627554	4.18324647253687	-0.302918023798271	0.487803771325827	0.761057402147961
Merged-chr1-183388949-4	chr1	183388853	183389053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277959)	promoter-TSS (NM_001277959)	-32.0	NM_001277959	21339.0	Mm.383556	NM_021466	ENSMUSG00000072258	Taf1a	TAFI48|mTAFI48	TATA-box binding protein associated factor, RNA polymerase I, A	protein-coding	6.38678220974395	6.32150340910022	6.05674590077022	6.20120748519014	6.40865643830679	6.37974317328524	6.45344926201011	5.9360268118325	0.103540681373076	0.666767140146939	0.862118979153907
Merged-chr5-115521998-4	chr5	115521901	115522101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	L1M5|LINE|L1	15325.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	7.10765614097024	7.06223387613429	7.00141974676738	7.06875910614053	6.87850496719032	6.94644193400271	7.01484299200781	6.93254584522176	-0.16672641341302	0.366339887022113	0.670823521147519
Merged-chr15-27664329-4	chr15	27664228	27664428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242424, intron 4 of 8)	intron (NM_001242424, intron 4 of 8)	17214.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	7.64929784129001	7.73196140904256	7.91128022672001	7.91715220069399	7.97827053963623	7.80170525773402	8.33683008245019	7.73839581361877	0.228239464400497	0.243154610568338	0.554129517805898
Merged-chr14-27378567-4	chr14	27378461	27378661	+	981.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 3 of 10)	intron (NM_027871, intron 3 of 10)	17172.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	5.10563664541013	5.55512063522144	5.2766199095287	4.93648004335841	4.67475242447471	4.81495704484104	4.21243982167183	4.28467241735861	-1.45313007447191	0.000225049816939413	0.00401042284714924
Merged-chr12-100791649-4	chr12	100791545	100791745	+	954.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361017, intron 3 of 14)	intron (NM_001361017, intron 3 of 14)	12588.0	NM_145448	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	5.18501851860158	5.32341508054194	5.06070734293457	5.07023266370271	4.68875350070492	4.98373875182609	5.03598433951877	4.80356448294038	-0.557863911314606	0.0824875671193525	0.311826572839152
Merged-chr10-59974278-3	chr10	59974172	59974372	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22502.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	4.30745336070972	3.73262823050256	4.5337152426898	4.52257319513386	4.00907411363992	3.66924240635632	4.32818721149294	4.08109835621439	-0.68358238244323	0.165368830403574	0.456002323608105
Merged-chr10-50634391-4	chr10	50634289	50634489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 4 of 41)	L1M4|LINE|L1	41720.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	7.09079726735775	6.9075274205948	6.70044899630094	6.44239602441771	6.96843123522362	6.92055213517285	6.3296676111103	6.07752992974117	-0.235475649067381	0.407885247781298	0.704075086986739
Merged-chr2-154714142-3	chr2	154714041	154714241	+	926.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57115.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	4.35778182885912	4.30600694365217	4.19017323166852	4.22038525401757	3.99593051689699	4.00927851841415	4.21546024058509	4.04516724033821	-0.515374037370838	0.201276767845854	0.503556256669362
Merged-chr4-148087522-4	chr4	148087423	148087623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301281, intron 1 of 4)	intron (NM_001301281, intron 1 of 4)	541.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	6.74707160674743	6.84515343453195	6.81454253412148	5.97956324821883	6.35932799532636	6.85392725583382	6.28079608601983	5.90536472287499	-0.352032272880514	0.249616083145179	0.56069878762278
Merged-chr2-60963085-3	chr2	60962984	60963184	+	835.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_020296, exon 1 of 14)	5' UTR (NM_020296, exon 1 of 14)	120.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	3.37068996904894	3.1991701072882	3.37116020875184	3.33829674984631	3.25666594275987	3.24975746624549	3.06557498199493	3.31528694032117	-0.354550735656604	0.509638426221673	0.774132584192743
Merged-chr3-103737935-3	chr3	103737824	103738024	+	859.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133859)	promoter-TSS (NM_133859)	77.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	3.26433861964506	3.21907823837154	3.32623999005861	3.67130995716813	3.61470253252612	3.43858699360803	3.37253881816925	3.59423755141976	0.369500051444464	0.496995384980696	0.766871773483313
Merged-chr8-39610460-3	chr8	39610372	39610572	+	665.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 7 of 9)	L1MC2|LINE|L1	32206.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	3.82245908022844	3.36501987803611	3.59804369761547	3.64498155303496	3.20269505704898	3.23890226229498	3.42718706608724	3.1945673999868	-1.24029184005907	0.0224085341215398	0.138180460039598
Merged-chr11-120378782-4	chr11	120378678	120378878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027980)	promoter-TSS (NM_027980)	-32.0	NM_027980	71885.0	Mm.274890	NM_027980	ENSMUSG00000025384	Faap100	2310003H01Rik	Fanconi anemia core complex associated protein 100	protein-coding	7.58095983407958	7.60678025555939	6.99151297823704	7.42707541658126	7.52689029691474	7.73323708390556	7.3711843765826	7.23455709689757	0.0713030780969249	0.73960987359763	0.897385322444781
Merged-chr6-48448617-3	chr6	48448497	48448697	+	770.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_173428, exon 2 of 103)	exon (NM_173428, exon 2 of 103)	368.0	NM_173428	243369.0	Mm.25039	NM_173428	ENSMUSG00000029797	Sspo	C79529|Scospondin	SCO-spondin	protein-coding	3.62868651596241	3.62776285326035	3.73193828986399	3.73456589833264	3.12369611800428	3.69231314843416	3.71593247943075	3.72969995674202	-0.316390534544348	0.549130876282808	0.797848267869647
Merged-chr11-114676028-3	chr11	114675927	114676127	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	559.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	4.76983130011673	4.35191895872898	4.58685393742188	4.22240243968431	4.39432844214786	4.54910710682066	4.64132793046809	4.83387316421612	0.281446399840166	0.466600868072622	0.746420287776482
Merged-chr16-77443524-3	chr16	77443423	77443623	+	892.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015543, intron 2 of 4)	intron (NR_015543, intron 2 of 4)	114195.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	3.26498328875004	3.5429307581525	3.91748401617238	3.78140080359701	3.49446666341548	3.51423221812133	3.98064328472598	3.51862407941014	-0.0300597039052773	0.955529659756966	0.984214597604776
Merged-chr2-52931583-4	chr2	52931480	52931680	+	903.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	ORR1B2|LTR|ERVL-MaLR	73712.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.82638574260934	4.27340251859147	3.94092266366105	4.23957585580017	4.37644957007532	3.88730160665966	4.55276641929786	4.23105896569948	0.478988433454893	0.284818264901443	0.596601873969183
Merged-chr13-112751975-4	chr13	112751874	112752074	+	872.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48803.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	4.17395520862156	3.87941861639914	4.17460175758494	4.02215294096993	4.04400533426839	4.05806612759337	4.11209428512237	4.1277391539538	0.0601489358456143	0.883755087264414	0.956344438085205
Merged-chr8-71289309-4	chr8	71289215	71289415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	intron (NM_001142322, intron 1 of 39)	16601.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	7.65042674430513	7.25372146896555	7.74882703584525	8.00130655489157	7.76068213770611	7.44917753112751	7.47222695313018	7.79687288132558	-0.087354162507274	0.686682963664245	0.871874882587332
Merged-chr12-3391078-4	chr12	3390989	3391189	+	985.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008445, intron 5 of 7)	intron (NM_008445, intron 5 of 7)	25957.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	5.2359664018436	5.49046501281063	4.86064273012441	5.26851225149445	5.51725220165613	5.44497642582294	5.73433766695326	5.49770935999879	0.550157720148499	0.0660307436989535	0.273631091829359
Merged-chr15-90963506-4	chr15	90963382	90963582	+	939.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016705, intron 22 of 32)	GA-rich|Low_complexity|Low_complexity	-65006.0	NR_033583	20738.0	Mm.431547	NR_033583	ENSMUSG00000116210	Spn-ps	Cd43-ps	sialophorin, pseudogene	pseudo	5.16286271070235	4.61416915528328	4.51379943533413	4.89750213841944	4.58746303678276	4.73347955240978	4.61980221520347	4.55481573621825	-0.426609816613964	0.242792132881329	0.553690788483524
Merged-chr13-37620078-7	chr13	37619967	37620167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-205971.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.74230495420246	7.22576351423105	7.27568199837799	6.74087254725511	6.88027993615158	6.79481955918547	6.87741458173354	6.79753764280902	-0.241715781218247	0.279489290871393	0.591495502480744
Merged-chr8-76899690-2	chr8	76899585	76899785	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NR_028579, intron 1 of 1)	CpG	936.0	NR_028579	102640923.0	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	-	predicted gene 10649	ncRNA	5.26895809019218	5.27596395666208	5.46256284061834	5.1427220557192	4.92369299481575	4.90411353879937	5.48448116270283	5.03895297964424	-0.329566858739021	0.307116315731609	0.619340215249893
Merged-chr1-184738087-4	chr1	184737985	184738185	+	984.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5592.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	4.74455397019311	4.995026536753	4.82319065696802	4.86602070960745	4.85212594458141	4.83955701221673	4.90804291714065	5.17891738653033	0.171558398430034	0.597321393060501	0.825256992211092
Merged-chr7-36698011-4	chr7	36697929	36698129	+	935.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172298)	promoter-TSS (NM_172298)	-89.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	4.24222296372448	4.11177628333847	4.46007058578165	3.8386344581716	4.54470860075159	4.7439459826966	4.4390171748371	4.24025314168496	0.810396115814009	0.0512479646733552	0.234978375081916
Merged-chr2-156324375-4	chr2	156324261	156324461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027585, intron 2 of 12)	intron (NM_027585, intron 2 of 12)	-11657.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	5.533810790635	5.32664345025263	5.12459839893776	5.50622128724071	5.83167910218035	5.62605458215293	5.53344055421957	5.63436206853233	0.47079186958049	0.0932821508384307	0.334059241350921
Merged-chr4-55812946-4	chr4	55812796	55812996	+	929.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-280421.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	3.67252870942673	3.59563276513017	3.97838669538013	4.30937779807427	3.77767880540043	3.73199892606104	3.71467307992297	3.9759272165749	-0.379617285853097	0.449830610957765	0.734874754587165
Merged-chr2-160618799-4	chr2	160618704	160618904	+	914.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-27093.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	4.47974286586285	4.6900595524262	4.75135075781422	4.84507474563505	4.38836687789623	4.37282833064574	4.4603241411006	4.60070263397525	-0.564470605375549	0.119521314079273	0.382544521554412
Merged-chr9-21871040-1	chr9	21870940	21871140	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	-18405.0	NM_177030	319899.0	Mm.128153	NM_177030	ENSMUSG00000032198	Dock6	2410095B20Rik|4931431C02Rik|C330023D02Rik|mKIAA1395	dedicator of cytokinesis 6	protein-coding	2.82921076456785	2.90092568896814	2.773118138866	2.59979753344582	2.4898193716513	2.46830629451189	2.51019447518478	2.64996286679869	-1.33751962211503	0.0582010172501507	0.253518915196976
Merged-chr14-73386795-4	chr14	73386694	73386894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1505.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	5.46479935543979	5.32610638940449	6.0975687042279	6.19879507640528	6.0460491426473	5.79165905316123	5.79096024474384	5.93024161608333	0.0883861470468501	0.778457009745121	0.913745806756274
Merged-chr2-84358827-4	chr2	84358725	84358925	+	932.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018782, intron 9 of 15)	intron (NM_018782, intron 9 of 15)	66441.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	5.11267640732172	4.76172011510667	5.1437132886019	5.1195123488016	4.65221373525369	4.97902704407147	4.92691171369849	4.80052875641446	-0.417667867505771	0.207471988298207	0.511447929091922
Merged-chr9-96718592-4	chr9	96718505	96718705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175537, intron 1 of 2)	MIRb|SINE|MIR	840.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	5.46543342689928	4.97164123347532	5.2078909809823	5.51101512643243	5.1100243598524	5.14097785331433	5.27376658176241	5.32566568778499	-0.194234849112178	0.532613713919886	0.788200754532765
Merged-chr1-95624512-4	chr1	95624448	95624648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009183, intron 4 of 4)	intron (NM_009183, intron 4 of 4)	43046.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	6.96865343328401	7.17305779673726	6.8539434989008	7.14996879481199	6.85773254668805	6.39914412389815	6.7213008068552	6.36103400161139	-0.613014430308498	0.00623810243631111	0.0558588367485456
Merged-chr6-134928741-4	chr6	134928647	134928847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037955)	promoter-TSS (NR_037955)	-345.0	NR_037956	381822.0	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	7.84552056123866	7.92818762355946	8.12890090444223	7.82084643303618	8.21989977428322	8.24334732019915	8.23512159585877	7.98702928786431	0.31534452759797	0.0601423604778614	0.258894382218507
Merged-chr7-116607073-8	chr7	116606969	116607169	+	936.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102700.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	3.43467071127573	3.30967316800531	3.25326856744846	3.22316651250618	3.298522034222	3.55222700312117	3.42152062852785	3.93983190672505	0.904582652203105	0.0889608792381921	0.325443101366874
Merged-chr12-55389880-4	chr12	55389773	55389973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310583, intron 1 of 6)	intron (NM_001310583, intron 1 of 6)	5651.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	7.42930141537037	7.10608783754911	7.30538295491151	7.37280540750145	6.961860029143	7.17405810387396	7.13024955529592	6.82585895860984	-0.387201813333417	0.0471395594667211	0.223466313904878
Merged-chr17-10856867-3	chr17	10856753	10856953	+	644.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	16494.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	3.28547474188666	3.41705759411525	3.55579875549832	3.35082112813328	3.39339650531296	3.39765811591604	3.44105411147512	3.22309507982033	-0.12417396400315	0.809947719857304	0.926735179021091
Merged-chr3-87769097-4	chr3	87768989	87769189	+	921.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289601)	promoter-TSS (NM_001289601)	-136.0	NM_152799	73182.0	Mm.158962	NM_028460	ENSMUSG00000028073	Pear1	3110045G13Rik|Jedi-1|Megf12	platelet endothelial aggregation receptor 1	protein-coding	4.34504021616098	4.62827762513535	4.25869516540662	4.39403181849578	4.10891671001886	3.96002634821951	4.4065244917269	4.11361251976741	-0.634093866372206	0.120100706096839	0.383662362594824
Merged-chr7-113172654-3	chr7	113172569	113172769	+	887.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30654.0	NR_045978	75239.0	Mm.381688	NR_045978	ENSMUSG00000110009	4930543E12Rik	4930545H14Rik	RIKEN cDNA 4930543E12 gene	ncRNA	3.8683673342409	3.83386505486733	3.82108548475583	4.08728723350535	3.44416058939311	3.53997556717425	3.70470005091511	3.71751847422283	-0.972040456203159	0.0419884998463994	0.207623241529166
Merged-chr14-22739775-3	chr14	22739678	22739878	+	696.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-196980.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	4.03173056335063	3.73956109959564	4.07325345073772	4.24460009946526	3.42139509408171	3.21843619108499	3.39026135608646	3.69983918529766	-1.89751434004505	0.000432304618611764	0.00685475839789859
Merged-chr5-150601002-4	chr5	150600897	150601097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001362416, exon 8 of 8)	3' UTR (NM_001362416, exon 8 of 8)	-6472.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	6.1522509037611	5.70079729790121	6.24906377570603	6.44320706301672	6.12973540292478	6.01686014391058	6.06104844700505	6.28089065732288	-0.0775482730769575	0.76998541254285	0.909958354298316
Merged-chr4-132212269-4	chr4	132212172	132212372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145393)	promoter-TSS (NM_145393)	-16.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	7.7474730518766	7.8790653115418	7.23968482036054	7.29214188382912	7.67323598299949	7.99379938085328	7.61470079498684	7.43805771088143	0.169235696958245	0.450906844930539	0.735619947634903
Merged-chr8-84974422-4	chr8	84974325	84974525	+	976.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011563, exon 6 of 6)	3' UTR (NM_011563, exon 6 of 6)	4323.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	4.87615746900421	5.22500847837922	4.62049177060137	5.03241129438814	5.24556330652628	5.26445691292099	5.09849058776446	5.27079212179232	0.479425404836351	0.136418076223123	0.41091739052877
Merged-chr10-122038767-3	chr10	122038671	122038871	+	939.1333619999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 1 of 21)	MLT1J|LTR|ERVL-MaLR	8544.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	3.92494090711738	3.77418242777879	3.97849958848365	3.45661837588362	4.22250318902715	4.50911401111529	4.39377884535169	4.25532096715668	1.51404106778657	0.000546366678286659	0.00828457287357615
Merged-chr1-179832959-4	chr1	179832896	179833096	+	830.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-28981.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	3.34245691381683	3.55369294970688	3.45714529829104	3.49062525801075	3.55384340307017	3.32791693001446	3.38874939902671	3.56000553062643	-0.000117559828182778	0.999813601844315	0.999897887761883
Merged-chr5-64933611-4	chr5	64933495	64933695	+	860.4541630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276445)	promoter-TSS (NM_001276445)	-37.0	NM_001276445	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	4.18861446873646	4.36332207614067	4.32751749724002	4.01198008787997	4.6391616673642	4.2142464594903	4.12228740298133	4.66676136926258	0.528594283434684	0.199804573445685	0.501777854612793
Merged-chr12-111843060-6	chr12	111842926	111843126	+	907.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011625, intron 7 of 16)	intron (NM_011625, intron 7 of 16)	28856.0	NM_026752	68520.0	Mm.390497	NM_026752	ENSMUSG00000021286	Zfyve21	1110013H04Rik|AW558780|C85416	zinc finger, FYVE domain containing 21	protein-coding	3.5356766444166	3.84177755955584	3.93626853721695	3.27827039040245	3.75992870552487	3.39427552012802	3.52273356508127	3.93369740321385	0.011458460920123	0.983102976743931	0.993953109026111
Merged-chr15-58264797-4	chr15	58264687	58264887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-49895.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	5.6365222901947	5.22697532863249	5.42512650359072	5.11859386756812	5.55982289223834	5.59981897401484	5.45412434695116	5.63350609032128	0.37878516967888	0.189224709361962	0.488089349073205
Merged-chr4-154141348-3	chr4	154141252	154141452	+	884.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1020.0	NM_021499	59002.0	Mm.46508	NM_021499	ENSMUSG00000029029	Wrap73	2610044M17Rik|5330425N03Rik|Dd57|Wdr8	WD repeat containing, antisense to Trp73	protein-coding	3.36824773671812	3.46850551457796	3.05953431143287	3.46374816241252	3.33448505717599	3.30243839234192	3.30023629001954	3.42065955289882	-0.0647999128860746	0.904306172402712	0.964559678221358
Merged-chr3-115693682-4	chr3	115693580	115693780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	21375.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	5.67356801513591	5.85025913290172	6.01181278045843	5.93841300673416	5.48948945743849	5.62745894077905	5.7908487433586	5.35014454558043	-0.511411768083881	0.056494930182207	0.248947727074804
Merged-chr19-10287596-3	chr19	10287499	10287699	+	899.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	MLTR14|LTR|ERV1	17278.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	3.21434644669879	3.55198802674975	3.45505086470366	3.72362196855488	3.41435475621331	3.45264437094066	3.38649090997769	3.45319599350854	-0.295383934699803	0.575054884546593	0.81272502373833
Merged-chr6-113441368-4	chr6	113441246	113441446	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1171.0	NM_001205025	67767.0	Mm.2053	NM_026365	ENSMUSG00000051256	Jagn1	5830427H10Rik	jagunal homolog 1	protein-coding	4.45190595180587	4.47418698024887	4.11740548908166	4.47888675503104	4.74706937652766	4.06926226152911	4.3002907002258	4.98990799749658	0.422890577975054	0.328010793283543	0.63935920954978
Merged-chr9-59565796-4	chr9	59565709	59565909	+	866.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010421)	TTS (NM_010421)	-12528.0	NM_175235	76183.0	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	3.92191636504606	3.68006790609243	4.15299455543056	4.18714181547738	3.85699339648085	3.93771519956739	4.04782925062652	4.01732549454038	-0.127708946805297	0.775826134236125	0.912527734959236
Merged-chr14-120243392-4	chr14	120243308	120243508	+	860.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32261.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	3.59981677135955	3.76119209744448	3.71431915855018	3.99869527607459	4.06697998512193	3.77576229822785	3.94450560348207	3.71231797893434	0.275455875825696	0.559250748538826	0.803673813331301
Merged-chr5-137531911-4	chr5	137531902	137532102	+	857.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010312, intron 1 of 9)	intron (NM_010312, intron 1 of 9)	1304.0	NM_010312	14693.0	Mm.30141	NM_010312	ENSMUSG00000029713	Gnb2	Gnb-2	guanine nucleotide binding protein (G protein), beta 2	protein-coding	3.94645212863598	3.69948621086548	3.5324615047424	3.45984945763967	3.75924152949473	3.97719649817353	3.5196485553074	3.9445547678076	0.438020568656864	0.371704969956081	0.675696906131982
Merged-chr10-51455982-4	chr10	51455877	51456077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24635.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	7.04537062836058	7.17699722242512	7.56432346692382	7.70713008461848	6.92976068442628	7.04977147017421	7.16413113011619	7.00335807444142	-0.511524796576946	0.0203371109011367	0.129432691061517
Merged-chr5-148332781-3	chr5	148332678	148332878	+	943.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007513, intron 12 of 12)	intron (NM_007513, intron 12 of 12)	60037.0	NM_001301424	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	3.77490891932644	3.73112730069708	3.65714737527307	3.29037255655646	4.21923704696901	4.29332501671557	4.18614096623209	4.20354610011292	1.75960548318984	9.98772084775745e-05	0.00202829096211848
Merged-chr18-79993663-7	chr18	79993605	79993805	+	957.369019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53190.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	3.84036591675256	3.5979683884295	4.18501929938894	4.35923300802868	3.52447247773837	3.55657220467279	3.49246519840205	3.6814037468947	-1.43196085850114	0.00573906459319272	0.0526011947822385
Merged-chr6-31220837-3	chr6	31220782	31220982	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040260, intron 1 of 5)	intron (NR_040260, intron 1 of 5)	531.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	4.15705625179765	4.24308532045692	3.73396530500066	3.97222314521123	4.16210879768195	4.23660607300776	4.18326089572635	4.2423691417277	0.425809435486987	0.308135882510146	0.620499730703869
Merged-chr6-108232225-3	chr6	108232125	108232325	+	564.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 2 of 61)	intron (NM_010585, intron 2 of 61)	19129.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	2.9325819573319	2.93848563718298	3.04954826562594	2.9628737618831	2.7708445827384	2.84124444405376	2.79627962305875	3.10226057898348	-0.394490516630075	0.517038322701482	0.778636851191553
Merged-chr8-26977115-4	chr8	26977018	26977218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101502)	promoter-TSS (NM_001101502)	-218.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	8.24972129820225	8.40440097585322	8.13112656054826	8.05713208183875	8.22824389624014	8.32129502810854	8.09257118729065	8.10671785117488	-0.0291595198521594	0.861219832332825	0.947574515069552
Merged-chr5-123058980-3	chr5	123058883	123059083	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11967.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	5.53220980562959	5.40593301565428	5.02431726852214	5.46211204200829	3.7807767343354	4.24986294061388	3.90209404108605	4.11094152169125	-3.25797254950678	7.57606267350327e-14	1.01364015984453e-11
Merged-chr7-80777256-5	chr7	80777210	80777410	+	957.2666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	26021.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	2.49438366307853	2.3617087720457	2.41762351600772	2.24920681893289	3.22978904670168	2.81375505856155	2.69265097448913	2.82407351855079	2.94375072297394	4.61680127985062e-05	0.00105563539446992
Merged-chr5-111178361-2	chr5	111178268	111178468	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	-152329.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	5.40459203492784	5.84849253107869	5.40552553945107	4.98803655107206	5.57079457782102	5.94506199650466	5.46582002786581	5.74512368505947	0.431323493813126	0.180023646355229	0.476359945980408
Merged-chr4-83526375-4	chr4	83526264	83526464	+	961.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355549, intron 1 of 24)	intron (NM_001355549, intron 1 of 24)	819.0	NM_001355378	320226.0	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	4.95276473749689	4.26501949654089	4.53692295042137	4.69721508936754	5.05078104343823	4.71458955871242	4.79416452071284	5.0130880645159	0.556396307021844	0.127949819173474	0.398030688298095
Merged-chr8-46883437-4	chr8	46883330	46883530	+	939.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103457.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	4.51795596189601	4.43207610877182	4.14464578949799	4.56246401216557	4.39308655355972	4.42638051562956	4.68428476474591	4.80442239230197	0.335102642294038	0.382698240864467	0.684699328536393
Merged-chr7-80388790-4	chr7	80388715	80388915	+	864.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010194)	promoter-TSS (NM_010194)	-869.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	4.65978685244188	4.05846888194604	4.2284312262119	4.46681795165658	4.14773224035015	4.09521256918774	4.21000398567332	4.55366508558375	-0.271891330931025	0.518723195922019	0.779715966669508
Merged-chr1-39922870-4	chr1	39922755	39922955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	21942.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	5.52367737456851	4.95722774790428	5.60202442319812	5.93553790397272	5.11305560164508	5.10902774543301	5.46996294145813	5.73963553413684	-0.313072110562023	0.378359043793298	0.680928428404154
Merged-chr5-105495349-4	chr5	105495256	105495456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24115.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	6.47067032333722	6.74950800935938	6.79998929047681	6.74392837899553	6.43676825198501	6.38533723282981	6.31393548940624	6.20275464300323	-0.525159322846032	0.0151836007491554	0.105800638054247
Merged-chr14-64311858-4	chr14	64311786	64311986	+	932.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253714, intron 1 of 4)	intron (NM_001253714, intron 1 of 4)	105070.0	NM_001253716	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	4.25153317492288	4.11892967303484	4.29645844862983	4.77715200379688	4.26963201536249	3.82248967076759	4.43853820860249	4.15630121085528	-0.504203305977927	0.266502627450269	0.578164752957072
Merged-chr9-75553875-4	chr9	75553768	75553968	+	950.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	5789.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	4.48684428925658	4.61110813042762	4.96572232119818	4.59270223026743	4.62410754928033	5.13793803751308	5.23397770542855	5.02710068543553	0.701252211908732	0.0509921279431052	0.234301767146232
Merged-chr19-56756506-3	chr19	56756365	56756565	+	997.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34093.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	4.07551885056492	4.31853333896744	4.24601434583213	4.21542302543334	3.77899773642549	3.94750005944233	3.75543763199414	3.58370709862882	-1.25154378053931	0.00516181075921556	0.0486510233090842
Merged-chr7-105650885-4	chr7	105650796	105650996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153392, intron 2 of 3)	intron (NR_153392, intron 2 of 3)	10451.0	NM_001360054	14356.0	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	5.56133979599626	5.32604947029517	5.37090992596896	5.52175858743147	5.2518555877246	5.32289700643038	5.58357570092467	5.27548209874819	-0.16263370453874	0.567201620544302	0.808159943760313
Merged-chr9-40479471-2	chr9	40479371	40479571	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	-23707.0	NM_172768	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	2.81538750553879	2.72270049106462	3.04018410047527	2.75811090651604	2.69772216322921	2.56950943027338	2.7436678133286	2.87414982518365	-0.521043319646792	0.424012981830619	0.715897813789117
Merged-chr18-4303316-4	chr18	4303209	4303409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49644.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	6.16707863770626	5.87582914701693	5.81424744014156	6.04037840820319	6.17106196568001	6.22194980344871	6.09763242512037	6.12460438504696	0.262831838683641	0.265098707214921	0.576956662317123
Merged-chr12-85513844-4	chr12	85513761	85513961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39971.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	5.56606842903482	6.5228464213965	5.53981549167217	3.91402023570053	5.92174745846684	6.19258375712546	5.33524734202025	4.67764805315021	-0.0939762724649675	0.918080930320293	0.969798468133041
Merged-chr9-61982082-4	chr9	61981996	61982196	+	926.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 2 of 7)	intron (NM_028748, intron 2 of 7)	-35297.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	4.2528922141598	4.34489896955017	4.10618067134955	4.64737140173311	4.39657452439599	4.55606732018339	4.13985801618804	4.29650573579121	-0.0428672060412711	0.917160335698468	0.969459238985449
Merged-chr3-142394263-4	chr3	142394152	142394352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190854, intron 1 of 12)	intron (NM_001190854, intron 1 of 12)	1444.0	NM_001190853	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	6.16438937130109	6.14654212895193	6.10348260050809	6.56091652272272	6.27267529422382	5.86160655363758	6.21170365198936	6.41554518202156	-0.0995407295147748	0.699065477543269	0.878624019192029
Merged-chr12-80785240-4	chr12	80785148	80785348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5284.0	NM_178682	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	5.12193778695402	5.01761648800813	5.51556233252968	5.25652396856744	5.57708101738947	5.55221215467549	5.51319457046782	5.28483127703787	0.445516259965611	0.129456967174909	0.400360889731452
Merged-chr16-84713234-3	chr16	84713111	84713311	+	722.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029565)	promoter-TSS (NR_029565)	188.0	NR_132106	100653389.0	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	2.83180032787984	3.21311590906379	2.90814909159021	2.54891541802311	3.70464833998976	3.35391994138111	3.4834400184298	3.23488171551221	2.25195010583552	0.000541842695691399	0.0082374671586113
Merged-chr7-35586186-4	chr7	35586085	35586285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145840)	promoter-TSS (NM_145840)	-62.0	NM_145633	245886.0	Mm.272620	NM_145633	ENSMUSG00000034867	Ankrd27	AA408090|BC016493|D330003H11Rik|Varp	ankyrin repeat domain 27 (VPS9 domain)	protein-coding	8.0523296024422	7.96320007117693	7.72972543595573	8.16886522441205	8.03512486636788	7.71753282779107	8.31804690051724	8.00206340412621	0.0553567648005021	0.775563117475323	0.912391634160948
Merged-chr4-152096195-4	chr4	152096090	152096290	+	807.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285999)	promoter-TSS (NM_001285999)	-529.0	NM_001285999	269608.0	Mm.332102	NM_001004156	ENSMUSG00000039713	Plekhg5	BC023181|Syx	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding	3.6904865968192	3.5474938488144	3.53597462845292	3.56338686333059	3.65322440026132	3.33940627126633	3.62640789386391	3.58777340588498	-0.065948015814961	0.892489207089148	0.95973062109316
Merged-chr12-38814144-3	chr12	38814068	38814268	+	960.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163154, intron 2 of 9)	intron (NM_001163154, intron 2 of 9)	30457.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	4.08840776474613	3.99056858047119	4.08905451105853	4.04940656268035	3.74272697166223	3.75567060058284	3.56396314987576	3.75028468793803	-1.01107303844495	0.0247310099524561	0.147418855824962
Merged-chr15-74897834-3	chr15	74897724	74897924	+	778.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16120.0	NM_025929	67038.0	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	2.46560065032581	2.47375869707031	2.38195531089678	2.10652783622285	3.06202774227293	2.8060769874927	3.28027539675438	3.05469121817636	4.62522864921499	1.12552731473163e-07	4.7829199244945e-06
Merged-chr5-135686626-4	chr5	135686537	135686737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2508.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	6.83795786855839	6.93880569291835	6.52845124879349	6.70334493902292	6.56342077695972	6.7860365172026	6.56018356365299	6.15672674499357	-0.324843581086724	0.161136248741451	0.44976734438523
Merged-chr4-97757451-4	chr4	97757340	97757540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-20186.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	5.82419906990686	5.23691309636862	5.89124570324257	5.48244377044375	5.73641865907319	5.8812181438383	5.65293847591901	5.67772052935777	0.196700632575345	0.49158895874848	0.763110362091264
Merged-chr1-23399775-4	chr1	23399654	23399854	+	894.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME2|LINE|L1	-16579.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	4.19018404620347	4.15653377847497	4.4602994083298	4.70150556136264	4.42660622632092	4.31720662860859	4.5546218967598	4.37385203546207	0.0122801965106643	0.975740019351757	0.991347073148764
Merged-chr11-120930197-3	chr11	120930065	120930265	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 1 of 18)	RLTR33|LTR|ERVK	2707.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	3.26777405998738	3.57685753676712	3.41289226080133	3.2821793741564	4.23753278402797	3.6669416477967	4.43432340474403	4.17982087194152	2.2832726708487	5.1855893217685e-06	0.000152965214394596
Merged-chr3-21820339-1	chr3	21820239	21820439	+	771.5	f0_balb.idr	Intergenic	Intergenic	-256313.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.68298554381532	3.30348563634558	3.5823742247713	3.80145802366954	3.6959123659673	3.4653322726956	3.45970749676555	3.47071951922173	-0.26009179715725	0.6147653702391	0.834112660609766
Merged-chr5-101995633-4	chr5	101995543	101995743	+	923.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	74278.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	4.64801347439955	4.73337237408699	4.48124786951404	4.32483678001778	4.94162372034532	4.74195721747971	4.66534450388562	4.6843494452707	0.491666029993716	0.168068249875391	0.460060602164315
Merged-chr14-16427796-4	chr14	16427672	16427872	+	970.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009409, intron 33 of 35)	intron (NM_009409, intron 33 of 35)	62566.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	5.28866310609672	4.95298655460857	5.92128671135365	5.85937556434162	5.42077932959267	5.05558216591848	5.76629249350807	5.72435082694055	-0.0878340768859809	0.809268325747899	0.926376505400415
Merged-chr17-46892708-4	chr17	46892606	46892806	+	983.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178385)	TTS (NM_178385)	2085.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	5.26575378037569	5.53629103085204	5.68606254689502	5.32352268487067	5.18212702981903	5.0085892737125	5.11078110519869	5.35298979616419	-0.515574204747863	0.087526412153772	0.32261625450227
Merged-chr17-44105783-4	chr17	44105706	44105906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199016)	promoter-TSS (NM_199016)	2.0	NM_199016	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	7.07985040595732	7.33580359492086	7.47513181652279	7.20790413465344	7.38192719544333	7.46522231980424	7.38228582365932	7.30418998771301	0.140813063708636	0.444606628473766	0.731001411006229
Merged-chr1-88285065-4	chr1	88284938	88285138	+	801.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7459.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	3.6953221719307	3.5088179348235	3.41182164944361	3.64495403860683	3.53656488824353	3.64943185377752	3.77746256485527	3.92571156586152	0.466217242526718	0.335727640800303	0.645934307404376
Merged-chr7-128172695-4	chr7	128172591	128172791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1255.0	NM_001029872	381924.0	Mm.334257	NM_001029872	ENSMUSG00000070369	Itgad	Cd11d	integrin, alpha D	protein-coding	5.84621982031318	5.14628754476651	5.7137167236474	5.8343457785349	5.42966880458265	5.2700391537572	5.33729055329208	5.58640427203116	-0.441544632385883	0.148934046615282	0.430863945050771
Merged-chr16-91354761-4	chr16	91354659	91354859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18024.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	7.75155446407858	7.81879992075367	7.93456371040076	7.71309271249247	7.56235946980184	7.55996462982651	7.626219554179	7.55337233140438	-0.297763546619526	0.0725810850629934	0.289669136736686
Merged-chr15-66893390-4	chr15	66893296	66893496	+	937.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018865, intron 1 of 4)	intron (NM_018865, intron 1 of 4)	2003.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	5.03129080536776	4.61970291052745	4.82968601428443	4.88125924615817	4.73239166273505	4.72162201903071	5.06743378858472	4.86261636860935	0.00557094869148237	0.986841002040827	0.995205005360357
Merged-chr11-73224160-3	chr11	73224060	73224260	+	938.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029031, exon 7 of 7)	3' UTR (NM_029031, exon 7 of 7)	-9989.0	NM_001001445	193034.0	Mm.447485	NM_001001445	ENSMUSG00000005952	Trpv1	OTRPC1|TRPV1alpha|TRPV1beta|VR-1|Vr1	transient receptor potential cation channel, subfamily V, member 1	protein-coding	3.81959227910712	3.86977215342807	3.42631059732692	4.04971293152068	3.7722485878453	3.60528929780358	3.80405316176274	3.66366913878542	-0.319822067895743	0.517645528022384	0.778957972116979
Merged-chr2-129515178-4	chr2	129515087	129515287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	21415.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	7.38231670920429	7.49960566479698	7.31166670603529	7.52319845262016	7.49879844676352	7.44574908990966	7.38615987399733	7.28530936665269	-0.0395619757476728	0.822920942372685	0.932185203682946
Merged-chr11-3164186-2	chr11	3164087	3164287	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 9 of 32)	B2_Mm2|SINE|B2	29276.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	4.89479412897628	4.6799607144204	5.00281805043028	4.65996880851995	3.40275167292045	3.59562083909657	3.67571808902364	3.61702428161517	-3.80817135787928	1.68979150311349e-11	1.47399104657004e-09
Merged-chr14-9468061-4	chr14	9467971	9468171	+	857.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-416024.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	4.18937688956806	3.65077195700273	3.63304416118389	4.01872898430944	3.53088125943608	3.91769459123529	3.92435235987699	3.44501652772154	-0.521108403072424	0.309282833296873	0.621622697166796
Merged-chr13-45963075-3	chr13	45962975	45963175	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 1 of 6)	intron (NM_001199304, intron 1 of 6)	1916.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	3.54952521280529	3.84998485621431	3.54998188529538	3.59053419642359	4.04781786608001	3.72336334044722	3.47869450402249	3.54813489392841	0.271804428545737	0.589470180852553	0.820464677958613
Merged-chr7-122705997-4	chr7	122705904	122706104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019430, intron 1 of 3)	L1M2|LINE|L1	34260.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	5.55801088812482	5.42012385987015	5.3860527728508	5.58872397625953	5.56705896005576	5.43486147423655	5.91883289880175	5.68294836238622	0.277625509024186	0.314265294567098	0.626308038585359
Merged-chr1-45838454-1	chr1	45838354	45838554	+	819.5	f0_balb.idr	Intergenic	Intergenic	43288.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	3.4332521717544	3.56006155580964	3.75258510348728	3.82516455870918	3.52951791700928	3.35181686810899	3.86820125317816	3.37043371066106	-0.350339151447557	0.504505785936144	0.770820558034405
Merged-chr3-121842398-3	chr3	121842289	121842489	+	875.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27087.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	3.43363270471826	3.09363711470114	3.25333584222139	3.16686231733794	3.66129405190436	3.55049997838187	3.67190937098724	3.59069700417247	1.32483019635145	0.00875546829909632	0.0717103130839838
Merged-chr7-16400188-4	chr7	16400098	16400298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198631)	promoter-TSS (NM_198631)	-998.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	7.41184381273484	7.99119447671532	7.57767778375201	7.41660080947904	7.93287384344217	8.00127082258234	7.82977447568358	7.68513155431158	0.32473827396752	0.107490785424141	0.361596709531563
Merged-chr3-69156159-4	chr3	69156055	69156255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126533, intron 2 of 2)	B4A|SINE|B4	24922.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	6.22899905256861	5.97485889241492	7.06897854607254	6.70908231715066	7.08521363610319	7.03641790658654	6.99882680715429	7.17244443286367	0.711842247052694	0.00899263172056531	0.0731276743103071
Merged-chr11-29308324-4	chr11	29308215	29308415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-61043.0	NM_025740	216618.0	Mm.128663	NM_025740	ENSMUSG00000020462	Cfap36	2300003H10|4931428D14Rik|Ccdc104	cilia and flagella associated protein 36	protein-coding	5.29840213608641	5.05691972916322	5.60192118028478	5.13180712668889	5.51588230524212	5.53435423867656	5.4723444641494	5.41412314204758	0.376723176977436	0.198908324878834	0.500571470664132
Merged-chr15-26360527-4	chr15	26360440	26360640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	51492.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	6.95408590000606	6.89804980606638	6.98100067734435	7.11328450677799	7.08048110937913	7.06549419161618	7.23768822740371	6.81391171161102	0.0869813836165075	0.660426087317472	0.858868844557586
Merged-chr15-73149796-4	chr15	73149699	73149899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	35148.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	5.9754461272741	5.83412747928178	5.88366356990112	6.06457640005609	6.14023956846825	6.06023097862156	6.29354379512037	6.15895799270348	0.331797212453019	0.158998949948416	0.446219364628123
Merged-chr11-111282480-4	chr11	111282390	111282590	+	771.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	216326.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	3.4876178381927	3.61257015336669	3.60351937420393	3.47779594807248	3.9260502376739	3.60380580585214	3.79094278148908	3.80520846220167	0.773173158081201	0.0960272355111658	0.339549060926442
Merged-chr14-25858147-3	chr14	25858058	25858258	+	801.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	16003.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	3.80110515383265	3.32036450617776	3.80169455400197	3.63179077141373	3.9398480361637	3.609306616358	3.29573241796641	3.30476756876341	-0.232943785848496	0.678180506113979	0.868017878240072
Merged-chr11-51367489-4	chr11	51367397	51367597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153393, intron 2 of 28)	MLT1C|LTR|ERVL-MaLR	77577.0	NM_153393	237759.0	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	6.36946056811929	6.29144087392906	5.84654869918527	6.41279027961833	5.93500884142126	6.19357661807554	6.48272917892798	6.22081820449496	-0.0655873075854171	0.800474313536034	0.923040237917604
Merged-chr4-155735478-2	chr4	155735378	155735578	+	822.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001101506, exon 2 of 4)	exon (NM_001101506, exon 2 of 4)	674.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	3.57565861318465	3.34142813649501	4.12032425931601	3.42521933444627	3.58290594879532	3.75135896771278	3.38321552892669	3.82932337606535	-0.000653653627175401	0.99904246739346	0.999532836539787
Merged-chr17-46524231-4	chr17	46524143	46524343	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081335, intron 16 of 40)	intron (NM_001081335, intron 16 of 40)	22145.0	NM_001081335	78309.0	Mm.329076	NM_001081335	ENSMUSG00000040327	Cul9	1810035I07Rik|Cul-9|Parc|mKIAA0708	cullin 9	protein-coding	5.25361054158486	5.14763498003696	5.25450695042885	5.48936949328375	5.33331142999408	5.04733947799316	5.03403876371846	5.18885611763646	-0.258110195081309	0.397675262606847	0.695998272762507
Merged-chr17-8264842-3	chr17	8264750	8264950	+	822.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18963.0	NM_018819	55951.0	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	3.81275076628399	3.52791330077974	3.55271196873691	3.78089299229534	3.46026220400736	3.83414758813105	3.79670951363503	3.60725053482808	-0.0123162220895818	0.979803530466169	0.992760647616391
Merged-chr2-164460909-4	chr2	164460841	164461041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025575)	promoter-TSS (NM_025575)	-30.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	7.20427599249595	7.47181396947683	7.06225359399159	7.1859093518817	7.49609185688659	7.22714442087917	7.39516968182033	7.40789375023726	0.201303462668698	0.288954905159526	0.600929003808641
Merged-chr14-31386251-4	chr14	31386144	31386344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	31433.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	7.67988104044483	7.44940586134754	8.18555538351326	7.96502478282988	7.56620344920448	7.51339762205562	7.65198227621328	8.08102726545546	-0.167862581894101	0.457007259394063	0.740295389645434
Merged-chr8-111732187-4	chr8	111732076	111732276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198839)	promoter-TSS (NM_001198839)	-40.0	NM_001198839	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	7.99098843114255	8.02838077024765	7.91190946735043	8.05035459457369	7.51710359107595	7.05384446338536	7.67990398761082	7.43269786465999	-0.723829432431771	0.000130581910207277	0.00254092121012679
Merged-chr12-16879930-4	chr12	16879830	16880030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15048.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	5.91647252478879	6.26142247165214	5.76939196415003	6.3091590118103	5.96576598087725	6.45335860754091	5.48210328585915	5.98129940585507	-0.128893040508194	0.669017767150974	0.863357017638244
Merged-chr16-4608015-4	chr16	4607927	4608127	+	863.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031184, intron 1 of 6)	intron (NM_031184, intron 1 of 6)	13314.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	4.07920170055583	4.1454031607569	3.87658559251003	3.95613100586955	4.31884367309516	4.42302184899098	3.86131390681344	3.87445086096319	0.342800759997639	0.438522502748701	0.726488844947045
Merged-chr6-113531625-4	chr6	113531523	113531723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175101)	promoter-TSS (NM_175101)	15.0	NM_175101	66087.0	Mm.275989	NM_175101	ENSMUSG00000030286	Emc3	0610039A15Rik|AI225901|AW260416|Pob|Tmem111	ER membrane protein complex subunit 3	protein-coding	5.70579919352055	5.91443841865878	5.30103603658196	5.63027059729643	6.01428710285837	5.85634692262545	5.30844939956974	5.65214753881054	0.139953718435429	0.64369328772687	0.849871909760734
Merged-chr16-35981704-4	chr16	35981589	35981789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-1674.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	5.11062852214146	5.29539053543243	5.27785103709658	5.69711103694623	5.12593219396241	4.93124392176275	5.34130458240643	5.88049494022512	-0.0153063108352565	0.965770033680318	0.987949946498776
Merged-chr8-11486261-4	chr8	11486169	11486369	+	933.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7770.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	4.34887676851081	4.82977170819367	4.48638394096192	4.51793070757879	4.76578500957834	4.52714094652248	4.28235126729334	4.91859813904265	0.197745956921848	0.609189544734463	0.83089280248568
Merged-chr2-25211426-4	chr2	25211327	25211527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021393)	promoter-TSS (NM_021393)	62.0	NM_021393	58202.0	Mm.116418	NM_021393	ENSMUSG00000013465	Nelfb	A730008L03Rik|AB041607|AI663983|Cobra1|Nelf-b	negative elongation factor complex member B	protein-coding	6.72213459372274	6.7673316967343	6.36566911524356	6.80409940400574	6.58126327162728	6.66728406184354	6.33313123839004	6.32298337247923	-0.287493777580157	0.204054228245771	0.507244798195929
Merged-chr12-16869618-3	chr12	16869469	16869669	+	892.5277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25409.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	3.39749406758322	3.61273069332939	3.3412606117353	3.53814690471505	3.26807153572263	3.26578741403359	3.00686268199307	3.60019938186645	-0.62774953519514	0.264161825218296	0.576312589873508
Merged-chr6-52713721-4	chr6	52713571	52713771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025816)	promoter-TSS (NM_025816)	-58.0	NM_025816	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	6.72666577099758	7.08646322863037	6.55203028429351	6.94379002030207	6.90025812794203	6.90457268148666	6.89864906499561	6.51261266924878	-0.0502096021630825	0.822641633787589	0.932143478460956
Merged-chr1-21014663-2	chr1	21014563	21014763	+	806.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_177409, intron 2 of 10)	intron (NM_177409, intron 2 of 10)	63037.0	NM_027974	71877.0	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	4.21737661744266	4.18348294810103	4.58908452787978	4.65147641602053	3.46223963992763	3.6106135222483	3.91290104562991	3.92692798742948	-1.93968388071547	6.50436781909545e-05	0.00141150730791279
Merged-chr11-78263390-3	chr11	78263310	78263510	+	899.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002004, intron 2 of 38)	intron (NM_001002004, intron 2 of 38)	1656.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	3.83448172141497	3.36463649944545	3.42481408779321	3.6987221745189	3.57825515971167	3.53941974846075	3.41267385835372	3.74200816596323	-0.0799801145927105	0.8753260962677	0.953139704537979
Merged-chr12-35983688-4	chr12	35983574	35983774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9251.0	NM_011783	23795.0	Mm.7244	NM_011783	ENSMUSG00000020581	Agr2	Agr2h|Gob-4|HAG-2|XAG-2|mAG-2	anterior gradient 2	protein-coding	6.38177815302475	6.17090591162073	6.36602983191752	6.71355853494521	5.46946117377185	6.10059325276109	6.20888761333454	5.84358166951967	-0.783618656933394	0.00508517653971295	0.0480906644421627
Merged-chr7-63913274-2	chr7	63913174	63913374	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	RMER17C|LTR|ERVK	-3583.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	2.90311804805992	3.01819455084286	2.83780459743302	2.79743172476322	3.12415839978638	3.01121685205992	2.95544048666303	3.08089400749406	0.685337677529893	0.238448946896285	0.548836356743826
Merged-chr10-8715856-3	chr10	8715748	8715948	+	873.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	170222.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.69993816045201	3.51096231943633	3.88294147824038	3.4527007176574	3.66185315370462	3.48034315934664	3.58377778127036	3.36439514311818	-0.335931312425949	0.509513888084699	0.774069176128678
Merged-chr7-80078081-3	chr7	80077927	80078127	+	911.8777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	-2770.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	3.83584283346554	3.73491622554605	3.88600980378536	3.9320366278984	3.75185196108237	3.60717164172911	4.0061056619888	4.02166183745853	0.00846317420264262	0.985162382003544	0.994598605754949
Merged-chr13-9107559-4	chr13	9107467	9107667	+	973.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	13686.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	4.71514792371407	4.76284316607081	4.75817911987119	5.48302148377095	5.31841747607203	4.50956797497498	5.42085737225249	5.08375286075739	0.262796484370021	0.525186896979897	0.783229855070132
Merged-chr11-61661007-4	chr11	61660865	61661065	+	865.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027817, intron 2 of 4)	intron (NM_027817, intron 2 of 4)	7644.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	3.97943769918389	4.30891459048918	3.65563058017134	3.89081401914485	4.1281649064863	3.94604877673076	3.96326453569933	4.02506944737915	0.110995086905943	0.80626853262358	0.925396476451461
Merged-chr12-31944031-4	chr12	31943925	31944125	+	845.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177993, intron 1 of 8)	intron (NM_177993, intron 1 of 8)	6220.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	3.84692525954268	3.60761941696585	3.79573338066323	3.83161972575814	4.13554830406091	4.06712832346098	3.72728275465032	3.89490941189789	0.547969879566663	0.222728777581292	0.530884419852054
Merged-chr12-86799039-4	chr12	86798905	86799105	+	719.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64636.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	3.4207832523819	3.24974130638981	3.24339802722697	3.42327825170434	3.46845563790987	3.3554442456803	3.40797513582972	3.71400551869323	0.514495443723519	0.318952042349443	0.630823985405764
Merged-chr11-69558849-4	chr11	69558756	69558956	+	830.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007911, intron 1 of 4)	intron (NM_007911, intron 1 of 4)	1381.0	NM_007911	13643.0	Mm.249637	NM_007911	ENSMUSG00000003934	Efnb3	EFL-6|ELF-3|Elk-L3|Epl8|LERK-8|NLERK-2	ephrin B3	protein-coding	3.84750548708242	3.94360995475951	4.73772756170308	4.04671218899714	4.06700812615901	4.02970151940242	3.77436536154691	4.47822118151498	-0.195768041430754	0.694922332136663	0.876183250613805
Merged-chr18-46521660-2	chr18	46521560	46521760	+	805.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173423, intron 2 of 2)	B1_Mus2|SINE|Alu	4311.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	2.88103087083855	2.7775448179837	2.94019809571427	2.42494803259563	2.80537075099247	2.7958709919549	3.08752965071481	2.53992663989046	0.243590566632344	0.728502749879481	0.892047963615777
Merged-chr6-145291555-4	chr6	145291458	145291658	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41006.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	5.05518294208924	5.19160607539897	4.95323186996917	5.17055763211299	4.78848619702132	4.6706226080881	5.37187799048917	4.87656345676251	-0.286095043183347	0.403060788650518	0.700563192893026
Merged-chr7-30588910-4	chr7	30588809	30589009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290573)	promoter-TSS (NM_001290573)	-183.0	NM_029274	75410.0	Mm.168688	NM_029274	ENSMUSG00000006307	Kmt2b	2610014H22Rik|Mll2|Wbp7|mKIAA0304	lysine (K)-specific methyltransferase 2B	protein-coding	7.81867339636225	8.04068288440969	7.75611418434735	7.65189082454019	8.13347264281192	8.05833569498296	8.27036330085279	8.02866547757404	0.396103913754537	0.0221024145630278	0.136909561063594
Merged-chr18-76930042-4	chr18	76929935	76930135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025409)	promoter-TSS (NM_025409)	8.0	NM_025409	66191.0	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	7.43429453846277	7.38878774812632	7.32253448581296	7.31240866675419	7.75442687435143	7.64212367644442	7.42776802339433	8.04589392877605	0.496530685127105	0.0103174103066129	0.080790203323916
Merged-chr13-76215614-3	chr13	76215527	76215727	+	828.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	116893.0	NM_001081352	218343.0	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	-	tetratricopeptide repeat domain 37	protein-coding	3.73955624499896	3.79873168850028	3.69405738225409	4.03758914254329	2.88914112364472	2.99030469107812	3.02973021017168	3.24902498658629	-3.38155307276213	1.11455357533142e-06	3.86800628661703e-05
Merged-chr8-120116292-4	chr8	120116218	120116418	+	893.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	2166.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	3.6233129785805	3.9031887390422	4.07400258903057	4.10761519113408	3.83871836653666	3.96377258124954	3.66847757383219	3.68031305465839	-0.445723478751128	0.341641327876848	0.650639445837748
Merged-chr4-128733706-4	chr4	128733616	128733816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	6145.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	7.75720019523251	8.00341435487656	8.00720966369378	8.2033679076819	7.65868552658417	7.70601775628061	8.07653382085348	7.87640854485679	-0.223911091030313	0.233274064958849	0.542875602881884
Merged-chr3-52634555-4	chr3	52634474	52634674	+	979.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105150.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	5.74478088767964	5.65506399093412	5.99619265686298	5.76585545621489	5.33505179883155	5.45386482966906	5.43436863195799	4.93021953696474	-0.841461885648189	0.00371682515593226	0.0378104756001289
Merged-chr15-53137555-4	chr15	53137436	53137636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	L2c|LINE|L2	208647.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	5.07305570429421	5.75490332386932	5.67456652522999	5.67273026358789	5.44628588574501	4.78580184203364	5.11986472871954	5.10644504096303	-0.760963464982689	0.0247851119733553	0.147605378610397
Merged-chr8-82992294-3	chr8	82992186	82992386	+	695.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 2 of 6)	intron (NM_177378, intron 2 of 6)	128930.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	3.28066148668327	2.99923355707431	2.86811891977161	3.08675155260462	3.76907481211382	3.45498622302745	3.43332928873936	3.49706967303531	1.7307835458305	0.00218341424250264	0.0250182296147932
Merged-chr1-161482392-4	chr1	161482271	161482471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12286.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	6.52417384829188	6.66895886124279	6.4051632388596	6.87401575043468	6.38304449238168	6.52689054345244	6.47558690666056	6.32645895484135	-0.321671856723023	0.1528515667675	0.437291867803211
Merged-chr15-38528103-4	chr15	38527985	38528185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-8819.0	NM_018745	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	5.8053445983412	5.31244870113864	5.68113655112151	6.25726249949467	5.81457840481112	5.50035372871836	5.95330113837912	6.04027014022482	0.0241064690637107	0.939649296746045	0.978240735005876
Merged-chr15-27703780-2	chr15	27703680	27703880	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22238.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	2.84504110650899	2.8040008468128	2.64939993748854	2.89042012622296	2.76245845982321	2.8888688489316	2.83528237134373	2.84397684480963	0.111277960834108	0.857223009441293	0.946239174364937
Merged-chr7-38071229-3	chr7	38071126	38071326	+	978.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36264.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	5.68185670600159	4.99511765385171	5.30087166908601	5.55601118072263	4.16549477236356	4.34605805531445	4.25045824888293	4.42832218882946	-2.39080545839109	4.88992180763704e-10	3.32118076665836e-08
Merged-chr6-28261971-4	chr6	28261848	28262048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081678)	promoter-TSS (NM_001081678)	-347.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	7.36974664686372	7.42595959770747	7.09193042024464	7.53652766856914	7.37851137987482	7.28200049112658	7.65001620303592	7.21735794089968	0.0240191177407922	0.904575600549959	0.964559678221358
Merged-chr8-46804281-4	chr8	46804175	46804375	+	900.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 2 of 7)	intron (NR_152560, intron 2 of 7)	64530.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	4.76508503894124	5.20570508599202	4.35352777937206	4.33400428708449	4.83831519410071	4.57930374167079	4.33454818020552	4.35087512586919	-0.352581254631786	0.416196832395246	0.710097010427652
Merged-chr9-100505972-3	chr9	100505941	100506141	+	865.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 2 of 3)	intron (NM_010878, intron 2 of 3)	815.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	3.13512601156052	3.53256218414759	3.06998076947629	3.05874385632856	3.4230950207498	3.24652427371122	3.30156776033767	3.36717686114864	0.465175276960986	0.403326830912312	0.700700507615324
Merged-chr1-171037109-3	chr1	171036981	171037181	+	911.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Asp-GAY|tRNA|tRNA	18155.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	3.70653516390431	3.66030962890012	3.7587315911792	3.71329911193552	3.76132621304702	3.59234751709145	3.69222026889994	3.98699543366029	0.173832803388389	0.705460023795832	0.881750702988051
Merged-chr2-181459985-4	chr2	181459930	181460130	+	817.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028125)	promoter-TSS (NM_028125)	-604.0	NM_028125	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	4.1202582479391	3.95336018263748	4.07482131110195	4.08058953653002	3.87814909109124	4.33430653736201	4.05715746603333	3.97510626911796	0.0128521602086222	0.975767018500347	0.991347073148764
Merged-chr7-121985656-2	chr7	121985556	121985756	+	864.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3963.0	NM_001033318	233824.0	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	3.03563671638484	3.09926827445123	2.97073757577318	3.01056821548047	2.96155791678184	3.43464791953878	3.25680914844108	3.32041152424256	0.861605847654963	0.130720094743142	0.402410609652443
Merged-chr3-79520123-4	chr3	79520049	79520249	+	988.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	47530.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	5.03742094756175	4.71480277889316	5.25518440407823	5.5484670292764	5.08250822501531	4.63639210273865	4.97979186645715	5.06816561689248	-0.443340184244651	0.224928669202673	0.53334646858495
Merged-chr3-127803019-2	chr3	127802917	127803117	+	747.416626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	12360.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	4.04925476346551	4.02923030242227	4.36106043539103	4.14097927899677	3.58618238403195	3.69337518686295	3.49779238250733	3.69377972508504	-1.58356498626779	0.000807738162273236	0.0113288659413688
Merged-chr4-155179230-4	chr4	155179152	155179352	+	692.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	43283.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	3.52964795937469	3.36075712534705	3.53009872223898	3.51243398743487	3.79767477890217	3.6457277364325	3.77302689691242	3.95880755992565	0.983502799741313	0.0369573166067657	0.191552089037572
Merged-chr11-71230889-3	chr11	71230805	71231005	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040696)	promoter-TSS (NM_001040696)	-172.0	NM_001040696	637515.0	Mm.390402	NM_001039680	ENSMUSG00000070390	Nlrp1b	Nalp1b	NLR family, pyrin domain containing 1B	protein-coding	3.69203842778121	3.54283911090044	3.69257985512182	2.44981225086711	6.12385233938872	6.12280849147469	5.99402311806375	5.88628930939157	9.73781038605492	4.43553116626224e-26	3.15363479556445e-23
Merged-chr19-6452371-4	chr19	6452259	6452459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 5 of 22)	intron (NM_001205234, intron 5 of 22)	33621.0	NM_001205234	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	5.23428708571605	5.0222276988215	4.93462875303872	4.92361371393598	5.08515617635465	5.18289788682847	5.23832440534121	5.31761296638477	0.340029429881046	0.262502022547579	0.574303319449388
Merged-chr1-174354857-4	chr1	174354733	174354933	+	837.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14086.0	NM_207137	258238.0	Mm.377274	NM_207137	ENSMUSG00000066672	Olfr417	GA_x5J8B7W3B3M-312879-313274|GA_x6K02T2P20D-20787051-20786119|MOR267-11	olfactory receptor 417	protein-coding	4.01322038752333	3.90397786592377	3.90843303882825	4.04827501636963	4.36634610283994	4.08549295493582	4.09343724790588	4.5073243228604	0.773126596306427	0.0627471545248261	0.265439184115214
Merged-chr17-35813333-4	chr17	35813223	35813423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8390.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	7.15685364252268	6.82443638467872	6.48896344755845	6.71494527989592	6.71474616472268	6.61276388199051	6.70983492670242	6.58611712424039	-0.220107013995492	0.32713053100708	0.63867529942819
Merged-chr5-108312736-4	chr5	108312611	108312811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081234)	promoter-TSS (NM_001081234)	-214.0	NM_001081234	433931.0	Mm.319881	NM_001081234	ENSMUSG00000029263	Pigg	Gpi7	phosphatidylinositol glycan anchor biosynthesis, class G	protein-coding	6.8014768510862	6.84953715525533	7.12090152800664	6.95725382208161	6.48774331052817	6.55404730257161	6.65180044562459	6.79783823757327	-0.447203541093249	0.0307658734078268	0.17008808569287
Merged-chr8-20557767-3	chr8	20557707	20557907	+	984.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-57120.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	3.38585457970858	3.20963845655412	3.38625662587984	3.09915422437398	4.52448867998646	4.25866140025001	4.34318097689785	4.53260057712328	3.49815945463609	4.93365049940822e-13	5.61397382744796e-11
Merged-chr12-100200222-5	chr12	100200124	100200324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313934)	promoter-TSS (NM_001313934)	80.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	6.93290021278793	7.13831661064952	7.54079028415731	7.33096287108005	7.22202970660227	7.25268372005663	7.1789971260549	7.15383875553416	-0.0759597858770541	0.707599604037971	0.882529695648857
Merged-chr11-20533410-4	chr11	20533317	20533517	+	788.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9836.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	4.11121400670174	3.8983533875049	3.87812464226288	3.60821409169944	4.1266843035106	4.10061980307723	4.09289356400476	3.45880889373993	0.268768234862063	0.586080133943177	0.81854474174343
Merged-chr13-41019161-4	chr13	41019062	41019262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360770, intron 3 of 4)	intron (NM_001360770, intron 3 of 4)	2912.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	6.78895123764865	6.59720337623859	6.76195024044817	6.91034848368575	6.61428646299864	6.54112058338441	6.9119760024182	6.77131189206521	-0.0872581027935793	0.679718076204914	0.86857902618052
Merged-chr16-8829303-2	chr16	8829203	8829403	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081400)	promoter-TSS (NM_001081400)	-797.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	5.61385017235517	5.67582145537496	5.95837208027248	5.81721756092194	5.48809519230272	5.65203721692734	5.44847468417316	5.44224336196694	-0.4519156610528	0.0895216739971991	0.326659887557814
Merged-chr11-5780326-8	chr11	5780237	5780437	+	907.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015577, exon 5 of 7)	non-coding (NR_015577, exon 5 of 7)	-8146.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	4.13867232122733	4.40829090448178	4.13930759009271	4.25868094729554	3.74133145442227	3.70155289952517	3.92724505323668	4.38335659332529	-0.730145162669144	0.112863572846722	0.371420623567672
Merged-chr9-47588532-3	chr9	47588458	47588658	+	903.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	MTEa|LTR|ERVL-MaLR	58206.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	4.2266891920909	3.99059826443534	3.96593690551099	3.90474676675968	2.95253010944635	3.15894502347085	3.03269037433896	3.1944644126572	-4.10356761248819	7.59898872246003e-08	3.33264583041271e-06
Merged-chr10-24591980-4	chr10	24591889	24592089	+	941.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3453.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	4.16750739464213	4.45054661571306	3.85209177997682	4.37462678398651	4.06887762285259	3.91310851162953	4.32284364371824	4.49329803155216	-0.055968418371194	0.90023555727256	0.963037675111283
Merged-chr5-124898922-3	chr5	124898828	124899028	+	678.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME2z|LINE|L1	36223.0	NM_001081750	269704.0	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	3.25929847349718	2.98389522974543	3.06438669212511	3.00981529796889	2.40445330875577	2.49497518642305	2.46822333141145	2.69911109262859	-3.47887501959696	0.000106538007395445	0.00214216633570632
Merged-chr3-148221638-3	chr3	148221527	148221727	+	926.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	733008.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	3.57231942423732	3.42764347037159	3.47442754775305	3.35547134758268	3.10086083133422	3.16498114472856	3.298408166452	3.30902702324853	-0.877438380417016	0.103575300675857	0.353659518699359
Merged-chr9-40807039-4	chr9	40806943	40807143	+	902.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5770.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.32457994232547	4.17851240080642	4.1972102075223	4.24183363805778	4.24161281746312	4.12679421386085	3.8801928252296	4.23870527322267	-0.255654246635912	0.52908447969958	0.785428050816226
Merged-chr1-58743551-4	chr1	58743452	58743652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 7 of 8)	intron (NM_001355056, intron 7 of 8)	13000.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	7.82341151985351	7.94937738788403	8.24335670966675	7.95084315344433	7.82979006078273	7.92332957397164	7.64137953809522	7.77267615492226	-0.263308031317886	0.135655263664355	0.410043884876734
Merged-chr17-80290176-4	chr17	80290085	80290285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194269)	promoter-TSS (NM_194269)	-27.0	NM_194269	378462.0	Mm.45208	NM_194269	ENSMUSG00000045257	Morn2	Mopt	MORN repeat containing 2	protein-coding	7.7676501350857	7.88219240264314	7.67611684513453	8.13262458124443	8.19437409429259	7.80032161512018	8.30595546841718	8.15786779233348	0.313905757298432	0.103615546683907	0.353695137033082
Merged-chr19-17335048-4	chr19	17334972	17335172	+	970.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	4433.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	4.45391758568612	4.26851193828231	4.01326527841038	4.46102407783247	5.259625682235	5.12959148830813	5.08240206245123	4.88878318053195	1.6095306925663	1.44183210752793e-05	0.000383083865553306
Merged-chr15-8279489-3	chr15	8279419	8279619	+	767.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110413.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	2.98158731906993	2.87467291620348	2.86760974775762	2.89796031714114	2.94286415335837	2.70404021262904	2.73344037861755	2.74041520666073	-0.528286380353575	0.400540494181799	0.698297047011029
Merged-chr15-66746583-4	chr15	66746477	66746677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 34 of 47)	intron (NM_009375, intron 34 of 47)	75807.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	7.88943866285068	7.84320359238557	7.97199124260506	7.78649662036454	7.34078781731471	7.55709532670021	7.64839212772777	7.39499411828353	-0.505279823116074	0.00363711597580927	0.0371589318274908
Merged-chr8-72217743-3	chr8	72217640	72217840	+	869.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-1990.0	NM_026455	67922.0	Mm.28327	NM_026455	ENSMUSG00000003039	Fam32a	2510049I19Rik|AW822030|OTAG-12|Otag12	family with sequence similarity 32, member A	protein-coding	3.44143649969094	3.75493202904716	3.28653751075555	3.1234419496684	2.84327718674457	2.77884760456072	2.82411013781768	3.16972354154659	-2.14536447877107	0.00170421478590295	0.0206264758112202
Merged-chr10-111455097-4	chr10	111455000	111455200	+	926.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-18127.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	4.39202587454551	4.25175563933553	4.19874014339731	4.51186202077393	4.56104249185513	4.42869667322979	5.02117870516527	4.63514100284237	0.71725490009223	0.0645390784611591	0.270044689525581
Merged-chr5-129914216-4	chr5	129914123	129914323	+	983.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001359308)	TTS (NM_001359308)	5683.0	NM_026916	69034.0	Mm.211372	NM_026916	ENSMUSG00000095789	Nupr1l	1810010E01Rik|4930579G22Rik|Nupr2	nuclear protein transcriptional regulator 1 like	protein-coding	4.67803645780681	4.57723057120976	4.93260489166582	3.94448686825617	4.723142995077	5.07222596752568	5.27264199417682	4.45860523467505	0.709633833293037	0.102853604927913	0.35216269069915
Merged-chr6-142757704-4	chr6	142757609	142757809	+	880.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009908, intron 1 of 7)	intron (NM_009908, intron 1 of 7)	1023.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	3.99519377856816	4.14868577692676	4.1495512373289	4.50091004905428	4.32540688222724	3.94385962527516	4.39065449417616	4.55647976319176	0.227596839032173	0.600933988807477	0.827051492743764
Merged-chr5-122131298-4	chr5	122131200	122131400	+	974.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183307, intron 2 of 12)	intron (NM_183307, intron 2 of 12)	3593.0	NM_001289811	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	4.73635652551306	4.84491086762105	4.91886851518904	4.82810091503334	4.63688153964465	4.6109679600212	4.79009994015255	5.13229056198841	-0.0569005886475892	0.868517151420698	0.950757933022268
Merged-chr2-155584370-3	chr2	155584296	155584496	+	874.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291111, intron 1 of 11)	ID_B1|SINE|B4	8414.0	NM_001291111	14854.0	Mm.252316	NM_008180	ENSMUSG00000027610	Gss	AI314904|GS-A/GS-B|GSH-S	glutathione synthetase	protein-coding	2.98360216699816	2.88577909403039	2.92089446897283	2.75507555098329	3.08511218765479	3.09378641163005	3.03259277521013	3.15481492198821	0.909352289193301	0.113506038734665	0.372521501802598
Merged-chr19-5944380-4	chr19	5944282	5944482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 13 of 17)	intron (NM_001164057, intron 13 of 17)	-19566.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	6.05689564763798	6.62301656206085	5.99218266140567	6.43557683999407	6.53029667350188	6.07687606677554	5.57235080325102	5.46877125171626	-0.474976977466303	0.154285412051518	0.439456383272923
Merged-chr6-124262862-3	chr6	124262771	124262971	+	936.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31087.0	NM_001104642	232367.0	Mm.469872	NM_001104642	ENSMUSG00000072778	Vmn2r27	EG232367	vomeronasal 2, receptor27	protein-coding	3.50527298613529	3.85719967972855	4.15273325369234	4.10793543980326	4.03189002115141	3.75692174947421	3.95337910158769	4.41606921508975	0.336325018097161	0.497179959767953	0.766982020988234
Merged-chr18-61040042-4	chr18	61039930	61040130	+	927.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3831.0	NM_009880	12590.0	Mm.144448	NM_009880	ENSMUSG00000024619	Cdx1	Cdx|Cdx-1	caudal type homeobox 1	protein-coding	4.27095391061095	4.59808084128787	4.77886937930756	4.59321130463511	4.75037550439875	4.723619849806	4.44373583517947	4.81001718734374	0.252387619771675	0.487330377575205	0.760659847260201
Merged-chr9-106469578-3	chr9	106469480	106469680	+	697.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001311150)	TTS (NM_001311150)	-3640.0	NM_001159652	436090.0	Mm.482905	NM_001159652	ENSMUSG00000091735	Gpr62	4933402E03Rik	G protein-coupled receptor 62	protein-coding	3.08117259042663	3.16317381536105	3.34572463608969	3.06509699646371	2.77145167693082	2.77827479640251	3.01067982802592	3.07994546948053	-1.07658563945754	0.0822420547607922	0.311342069813824
Merged-chr1-173412657-2	chr1	173412566	173412766	+	894.666626	f0_c57.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-7938.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	3.32367286900458	3.56372649390153	3.3240535774632	2.96665084533326	4.52619600729919	3.94675331900715	4.37419168965961	3.91707698781502	2.85532604997176	5.3906502578235e-08	2.44863493747045e-06
Merged-chr19-46934259-1	chr19	46934159	46934359	+	889.1666869999999	f0_balb.idr	intron (NM_029810, intron 2 of 17)	L1ME1|LINE|L1	28092.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	4.19086353849523	3.93409147855398	4.34201735933957	4.21808216340356	3.52988022149605	3.50225075116466	3.696623153952	3.82007688881697	-1.58590045247115	0.000887653739971342	0.0122486082159875
Merged-chr6-126940067-4	chr6	126939955	126940155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138594)	promoter-TSS (NM_138594)	89.0	NM_138594	28040.0	Mm.44228	NM_138594	ENSMUSG00000030347	D6Wsu163e	C12orf4	DNA segment, Chr 6, Wayne State University 163, expressed	protein-coding	5.20347378529681	5.18372705943001	5.53870662525848	5.21005228366459	5.12320818061157	5.24618433029697	5.00985298165205	5.43304045401677	-0.140464953621836	0.645026439875333	0.850606509631805
Merged-chr7-105642040-3	chr7	105641820	105642020	+	745.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360053)	TTS (NM_001360053)	1475.0	NM_001360054	14356.0	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	2.58510182875007	2.71255171757244	2.80254484557644	2.51692050134713	2.7405560057364	3.04315888673948	3.03362822448081	3.29606584668587	1.76860285845456	0.00632744706469193	0.0564034257504955
Merged-chr16-27374278-4	chr16	27374165	27374365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4026.0	NM_198166	224065.0	Mm.326918	NM_198166	ENSMUSG00000056423	Uts2b	Gm538|U2B|Urp|Uts2d	urotensin 2B	protein-coding	7.78070507427275	7.70472331183565	7.48928160854393	7.71056733887211	7.8458636005024	7.95157370301886	7.68943832075255	7.54097603369182	0.116965099681644	0.516004956939175	0.77793651811945
Merged-chr5-90224058-4	chr5	90223937	90224137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033310)	promoter-TSS (NM_001033310)	-41.0	NM_001163456	231430.0	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	8.83642803546623	8.99734435395307	8.95043042428853	8.98133612617226	9.11239638833572	9.32423819886367	9.2661044816636	9.11791112042373	0.323955638455402	0.0231693724768451	0.141038858246198
Merged-chr11-117663648-4	chr11	117663552	117663752	+	922.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 1 of 21)	intron (NM_198022, intron 1 of 21)	9363.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	4.74857556968857	5.12727379442976	4.49025986738348	4.70073428379123	5.27235105879098	4.8448844908566	4.60514213565163	4.89382972879381	0.30399763345138	0.415712625483407	0.709886482687489
Merged-chr8-3441848-3	chr8	3441745	3441945	+	904.8666380000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133962, intron 9 of 19)	intron (NM_133962, intron 9 of 19)	25803.0	NM_026951	69129.0	Mm.45279	NM_026951	ENSMUSG00000069633	Pex11g	1810022F11Rik|1810049N02Rik|Pex11c|Pex11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding	3.30848340671292	3.72794977924016	3.55345339798347	3.4224259211673	3.44073102607678	3.61318894281642	3.87657253298951	3.80386957470728	0.567303843594128	0.260911322797485	0.572842788797001
Merged-chr6-136804423-4	chr6	136804338	136804538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175652)	promoter-TSS (NM_175652)	-7.0	NM_175652	320332.0	Mm.246720	NM_175652	ENSMUSG00000096010	Hist4h4	B130044J01Rik	histone cluster 4, H4	protein-coding	7.59550501460747	7.79233094630577	7.69643527072026	7.48679334066174	7.33792386155269	7.47247163369963	7.48852179669224	7.60020242497539	-0.223543754102526	0.212570586205272	0.51751416887865
Merged-chr17-30972138-3	chr17	30972007	30972207	+	649.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177465, intron 5 of 21)	intron (NM_177465, intron 5 of 21)	17424.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	2.78480647056198	2.6451908563175	2.92491258901377	2.66783806389272	3.2897230582397	3.10267541762071	3.09810587790617	3.45988796199316	2.11644500441004	0.000479856825517147	0.0074739013092965
Merged-chr16-11017988-4	chr16	11017868	11018068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9070.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	5.57499900909767	6.57647092305726	5.79214248853885	5.35604102742766	6.13623380234632	6.17341306165309	5.76252389906286	5.68454191459045	0.0705149784130832	0.840359397657683	0.939246943014465
Merged-chr14-103048505-4	chr14	103048402	103048602	+	838.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008392, intron 1 of 4)	intron (NM_008392, intron 1 of 4)	1490.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	3.85307590777819	4.30247627417971	4.07442865735002	3.9333086292505	4.84294331795796	4.14797506759618	4.24431702513225	4.30412833395513	0.926171839086584	0.0347464470327344	0.184513380583632
Merged-chr11-119909637-3	chr11	119909528	119909728	+	828.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 2)	LTR41B|LTR|ERVL	-4182.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	3.52798485122428	3.5834580410001	3.52846284027527	3.19881867512337	3.81637300428927	3.5878064939773	3.39932656096963	3.8241102433865	0.696458547765681	0.173784336235876	0.467932514086273
Merged-chr2-84798779-4	chr2	84798628	84798828	+	973.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019949)	promoter-TSS (NM_019949)	-100.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	4.30731012432089	4.86497166565476	4.44073745440215	4.27724160771711	4.4252496722798	4.48296991732039	4.46141707316253	4.2087906913488	-0.209763181505653	0.599981714726358	0.826665382737919
Merged-chr2-5804615-4	chr2	5804472	5804672	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356502, intron 8 of 11)	intron (NM_001356502, intron 8 of 11)	-40462.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	4.98292899125377	4.8600931188999	5.15489991591351	5.4516324349782	5.01272824534362	4.92435581363356	5.19153160110697	5.55764209619211	0.0805145579628436	0.817030825419392	0.929622615879435
Merged-chr2-60839007-3	chr2	60838918	60839118	+	775.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	42420.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	3.3850537028527	3.16248235242881	3.43765502141246	3.76399872837079	3.10469923878031	3.05533209057084	3.3182026374537	3.08627901585601	-1.20651480006095	0.0405544927564318	0.203541689459178
Merged-chr9-78430686-4	chr9	78430576	78430776	+	973.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_125721, exon 5 of 5)	non-coding (NR_125721, exon 5 of 5)	12561.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	4.91961276903485	5.00094144175408	4.65827409267886	5.07534741824573	4.91372685766388	4.28946044291136	4.92968345812392	4.73572570519014	-0.36946511910404	0.314487650245754	0.626449401305307
Merged-chr16-94207417-4	chr16	94207317	94207517	+	796.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 6 of 10)	MTB_Mm|LTR|ERVL-MaLR	82874.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	3.73716020113921	3.87932229929734	3.79406615901439	3.77038275250667	3.94100561614778	3.96981320370722	4.23347806584692	4.21187194235908	0.813344347645866	0.0577616300437742	0.252294773771411
Merged-chr2-4508142-4	chr2	4508031	4508231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-51623.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	7.83114907997119	8.07265852924391	7.97666849393621	7.99493737516953	7.75421035716648	7.98680973583672	7.95861871461718	7.81950113293178	-0.123679893403727	0.453498597231368	0.737566015133818
Merged-chr2-43772864-4	chr2	43772775	43772975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 1 of 14)	intron (NM_001301831, intron 1 of 14)	24051.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	7.48439147556653	7.31897606610115	7.26179796126968	7.73363390984346	7.50874929835723	7.39407840475953	7.35216018817053	7.74781833038199	0.0472879961128433	0.815237315277486	0.928718235748118
Merged-chr13-60701975-4	chr13	60701784	60701984	+	968.15625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	84480.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	6.30168399679987	6.33442123927386	6.65078060592756	6.7898805510387	5.53814548391335	5.77213692910953	6.21471295695106	6.20370477097129	-0.895710573616737	0.00125912415031751	0.0161862376549485
Merged-chr8-27174710-4	chr8	27174603	27174803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080813)	promoter-TSS (NM_001080813)	-57.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	6.97616760214086	7.23070062410298	7.00237917576465	6.72190304922929	7.07628993423652	6.94943240511303	6.92948615482939	6.81113346769098	-0.0497539454182059	0.813507153694595	0.927899264355291
Merged-chr15-38644451-4	chr15	38644341	38644541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17463.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	6.61829212916757	6.47472411594167	6.78141342166067	6.71896306684456	6.7867005103618	6.957011516105	6.38239218614665	6.59893383236799	0.0636883166930102	0.776309377740565	0.912883229985628
Merged-chr10-95500911-4	chr10	95500856	95501056	+	856.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359476, intron 1 of 5)	intron (NM_001359476, intron 1 of 5)	993.0	NM_001359476	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	3.67531370306314	3.95080876798964	3.50003824325189	3.74704820054336	3.8798794667697	3.73674534328514	3.86161647320753	3.77892438235611	0.25085472290835	0.588087247402885	0.819488296454385
Merged-chr18-6163190-4	chr18	6163104	6163304	+	965.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27106.0	NM_001039692	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	5.04096051701161	4.27481124007062	4.9772604341398	5.13269768484676	4.81350231167916	4.63525971474998	5.1912209563504	4.79661056461367	-0.0557150009710435	0.887081264570618	0.957633386378585
Merged-chr6-15720918-8	chr6	15720866	15721066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 1 of 4)	CpG	305.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	5.78315935052451	5.59775203665712	6.239869921344	5.75275859646902	5.26415086022759	5.72592729030321	5.62994446895901	5.93703953548185	-0.341674756754939	0.257867513865704	0.569693582005417
Merged-chr6-5112633-3	chr6	5112544	5112744	+	980.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 8 of 15)	intron (NM_181595, intron 8 of 15)	81302.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	3.20354722346842	3.15232304934815	3.4744469689574	3.59874495980011	3.37298497508246	3.18645521248718	3.19273912400711	3.00838292720057	-0.647949044620286	0.266044220954459	0.577792878398029
Merged-chr1-167339546-4	chr1	167339413	167339613	+	994.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-10478.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	5.15670888927039	5.18813370939729	5.63402885163562	5.51109096517974	4.97909759125226	4.5287128187018	4.84737013690057	5.33356393648403	-0.813464694218191	0.0207497859951195	0.131272688414062
Merged-chr5-122400838-4	chr5	122400741	122400941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 2 of 6)	intron (NM_019824, intron 2 of 6)	8963.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	6.5467161607055	6.2524722966477	6.48306207883172	6.19592995522186	6.47862363642198	6.2302105495528	6.73027970610572	6.64904051952715	0.253297080231643	0.27838257796008	0.59057562936995
Merged-chr15-7863740-4	chr15	7863628	7863828	+	955.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48178.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	5.00609123579528	5.01443407134656	4.90855336169427	4.96018350297056	4.41914218081407	5.01141976622087	4.81510160357315	4.19843514818507	-0.688262693005258	0.068099516098385	0.278573069579187
Merged-chr9-55208980-4	chr9	55208860	55209060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028049)	promoter-TSS (NM_028049)	25.0	NM_028049	71999.0	Mm.276429	NM_028049	ENSMUSG00000032309	Fbxo22	0610033L19Rik|1600016C16Rik	F-box protein 22	protein-coding	6.27271954878359	6.24936641245772	5.63344490066618	5.88774111104845	5.92863320781442	6.14759066072927	6.42390390514017	6.23294273845366	0.242435324522249	0.370664084051824	0.674873352399978
Merged-chr2-117328759-4	chr2	117328644	117328844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 2 of 16)	intron (NM_011246, intron 2 of 16)	14133.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	5.98272627497365	5.5021352933369	5.28266770853748	5.15316397184711	5.80920400299307	5.61605732964218	5.49768914838437	5.60191317440679	0.23149332661632	0.461936301331339	0.743501704400988
Merged-chr2-3355965-4	chr2	3355790	3355990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145921, intron 3 of 7)	intron (NM_145921, intron 3 of 7)	10679.0	NM_145921	99035.0	Mm.13808	NM_145921	ENSMUSG00000026645	Olah	AI607300|E230009B14Rik|Thedc1	oleoyl-ACP hydrolase	protein-coding	6.04525362907151	6.58897350237604	6.35197207672632	6.04690703907791	5.98954366466279	6.06280877359926	5.97167133256428	5.90525399516013	-0.447449066007461	0.0793778485292565	0.305020721491347
Merged-chr3-60501275-4	chr3	60501212	60501412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001253710, exon 1 of 8)	5' UTR (NM_001253710, exon 1 of 8)	133.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	6.4262548916995	6.30621128703406	6.40995189272442	6.30384328810829	6.50408811115934	6.85231600292407	6.39449092563003	6.25652262024696	0.236294650160284	0.305350309500196	0.617774136772055
Merged-chr7-143021957-4	chr7	143021854	143022054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110354, exon 5 of 5)	non-coding (NR_110354, exon 5 of 5)	16295.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	6.42062199841411	6.84964035580094	6.64438391890201	6.63982914583617	6.86897087222976	6.54305555409929	7.19799231031844	6.78750939810921	0.316980860090971	0.167075005537917	0.4585269855325
Merged-chr13-95849945-3	chr13	95849847	95850047	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	41975.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.57636291777782	3.63679977825923	3.41678283622001	2.56924700605166	4.96442156592869	5.04117835505656	5.11123429673224	5.085498287861	4.80427371520009	3.25691103497325e-06	0.000101410179596833
Merged-chr8-82382486-4	chr8	82382391	82382591	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	20095.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	5.60517049737234	5.93280724605878	5.65892455143725	6.00468076534688	5.46144173773788	6.00133155085924	5.31112166655675	5.45997456753828	-0.408204331655623	0.16819736635997	0.460191392541484
Merged-chr9-45274372-3	chr9	45274279	45274479	+	706.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5230.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	3.54329545947251	3.52716648817749	3.44128896430345	3.24760845185203	3.25710878522624	3.31999984065415	3.13271801931088	3.43933879408077	-0.525671782070966	0.328182558292605	0.639603778492207
Merged-chr7-127573241-4	chr7	127573143	127573343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026888)	promoter-TSS (NM_026888)	-105.0	NM_001360741	68961.0	Mm.274473	NM_026888	ENSMUSG00000030815	Phkg2	1500017I02Rik	phosphorylase kinase, gamma 2 (testis)	protein-coding	8.467547742056	8.50698662046575	8.23415362102243	8.185735462329	8.22707495082365	8.22879130668891	8.12304669160873	8.26345923132596	-0.178181988652653	0.275061226174325	0.586870388113734
Merged-chr18-36678525-4	chr18	36678387	36678587	+	929.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083317)	promoter-TSS (NM_001083317)	-728.0	NM_001360989	67843.0	Mm.273350	NM_026404	ENSMUSG00000033272	Slc35a4	2610030J16Rik	solute carrier family 35, member A4	protein-coding	4.42100572941024	4.33837067829869	4.64810883264192	4.33186570638431	3.80116844257908	4.55294491480393	3.91043290727629	4.64490251793079	-0.3817065262867	0.408561401725929	0.70438176546703
Merged-chr9-104269457-4	chr9	104269354	104269554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6524.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	6.62025470676443	6.87307882872228	6.42841369665031	6.71713848966134	7.15757412590718	7.11259523433929	6.76841252963526	6.91891240677368	0.458432855996895	0.0326333662812553	0.176998284996547
Merged-chr7-10495053-2	chr7	10494953	10495153	+	876.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009577, intron 1 of 3)	intron (NM_009577, intron 1 of 3)	328.0	NM_009577	22775.0	Mm.49441	NM_009577	ENSMUSG00000030393	Zik1	-	zinc finger protein interacting with K protein 1	protein-coding	3.21630803069886	3.21363157878247	3.3881928941241	3.5368684904185	2.95114313068193	3.50293780141364	3.37440397307161	3.15268259524186	-0.349862548852768	0.546723463169425	0.796529175227945
Merged-chr12-80061083-3	chr12	80060988	80061188	+	775.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51925.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	4.47627012838125	4.66736432577527	3.88571250662205	4.17337674581187	4.19358888262987	4.27262637352455	3.81268383320367	3.88361133956015	-0.688288021065197	0.141305638184662	0.418205263231201
Merged-chr12-12270157-4	chr12	12270045	12270245	+	883.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	MTD|LTR|ERVL-MaLR	8006.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	4.69620094899259	4.39389907445396	4.10990491134622	4.69843006992133	4.55819140454664	4.28511315532924	4.24122678113111	4.43407396401924	-0.267647289440518	0.509651917139036	0.774132584192743
Merged-chr17-7169469-4	chr17	7169394	7169594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011299)	promoter-TSS (NM_011299)	-621.0	NM_011299	20112.0	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding	6.00260262794049	6.0984079338165	6.02572192425533	6.16941660258569	6.06113773033104	6.24408389049201	6.11940302001834	6.26001241441346	0.127646953010484	0.578769104773264	0.814949494890204
Merged-chr1-135540470-4	chr1	135540369	135540569	+	972.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 1 of 28)	intron (NM_173437, intron 1 of 28)	44886.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	4.89142159976542	5.06427190188843	4.78031404396892	4.85935250152419	4.77432297588693	4.99276599975073	5.12408795255147	4.65479599820173	-0.0161712240411622	0.961389001051156	0.986179966620764
Merged-chr2-17989757-2	chr2	17989657	17989857	+	690.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7201.0	NM_026627	68231.0	Mm.23887	NM_026627	ENSMUSG00000062651	H2al2a	1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1	H2A histone family member L2A	protein-coding	3.18427572791557	3.07104574333822	3.06934276778382	3.39014589819841	2.97172214931384	2.98064256695515	2.93381154377273	3.18297000002644	-0.717482707433701	0.224860033266433	0.533284902067823
Merged-chr5-122726284-2	chr5	122726184	122726384	+	721.958374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310718, intron 8 of 10)	intron (NM_001310718, intron 8 of 10)	18740.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	2.88690892879115	2.96950349875849	2.81770121266968	2.8755839038918	3.1445006269759	3.18728397839664	3.12131476943017	3.2393888370878	1.16765813405441	0.0394699758309548	0.200087843435049
Merged-chr2-160887500-4	chr2	160887412	160887612	+	845.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199118)	promoter-TSS (NM_001199118)	-656.0	NM_001199118	64899.0	Mm.292111	NM_022883	ENSMUSG00000027412	Lpin3	9130206L11Rik|AA438110|AV236139|mKIAA4023	lipin 3	protein-coding	4.23335570250366	4.38520701284103	3.8987857126117	4.13997815625517	4.05886769289347	4.02077456941598	3.8284162636527	4.23132787300492	-0.346809723814974	0.421251820511717	0.713877513742286
Merged-chr13-112251633-4	chr13	112251513	112251713	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36838.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	5.11575733081426	4.79444625689406	5.23570913796559	5.17971424937784	4.8439055509514	4.85207819486029	4.8903972327414	5.11310608209983	-0.329410453454907	0.310055452782027	0.622199763486801
Merged-chr12-103493030-4	chr12	103492926	103493126	+	847.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35803.0	NM_145449	217845.0	Mm.298416	NM_145449	ENSMUSG00000021208	Ifi27l2b	1810023F06Rik|ISG12(b2)	interferon, alpha-inducible protein 27 like 2B	protein-coding	4.18105816096474	4.0071666349046	3.57664318490703	3.86946518346378	4.23047996169529	4.30855746066446	4.07242578678389	4.41890153823433	0.873356088456827	0.0455872916697221	0.218788876930696
Merged-chr13-97129313-4	chr13	97129214	97129414	+	989.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021552)	TTS (NM_021552)	8612.0	NM_021552	59050.0	Mm.390634	NM_021552	ENSMUSG00000060739	Nsa2	5730427N09Rik|LNR42|Nsa2p|Tinp1|Yr29	NSA2 ribosome biogenesis homolog	protein-coding	5.23485244741939	4.88087697889057	5.00874116326416	5.07130689239251	5.24912236108878	5.0358748329939	5.17998016204918	5.29007142901066	0.268886462144808	0.375312122366134	0.678319587954097
Merged-chr3-88510152-4	chr3	88510048	88510248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6796.0	NM_001002011	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	9.11416176315338	9.19611198659576	8.82849084885053	8.84290476977322	8.95866563505778	9.11469896115102	8.99949884396546	8.67766423252455	-0.0705009091835475	0.680641249171681	0.868933072814835
Merged-chr18-67606237-4	chr18	67606108	67606308	+	886.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35147.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	4.19758379008883	4.16518956727887	3.91865452405974	4.10246950689479	4.02781003799624	4.03965397797515	4.00191604770763	3.91647390764415	-0.276021929141657	0.507290591593163	0.772710503440438
Merged-chr19-26605964-5	chr19	26605925	26606125	+	959.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 1 of 32)	CpG	865.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	3.6790310219411	4.17847030655668	4.68919271811644	4.38346508636362	4.13753430311866	4.40867299014066	4.30368243151202	4.13891516067107	-0.0821902963676084	0.860069089060833	0.947123023003096
Merged-chr9-44134708-4	chr9	44134595	44134795	+	798.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023061)	promoter-TSS (NM_023061)	37.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	3.87679923750957	3.45036525894066	3.78567670820212	3.35758514332502	3.58613630037002	3.57946841499971	3.67135172040012	3.73493536114756	0.0669972249714497	0.894178423832729	0.960481560907683
Merged-chr1-64530096-3	chr1	64529960	64530160	+	833.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2744.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	3.30432295752134	3.13823176859515	3.5200194585363	3.40983407628811	3.16582366469502	3.29447768433806	3.10652057247392	3.70128042147887	-0.051141955039583	0.928372072187662	0.973969592850704
Merged-chr16-65197465-4	chr16	65197372	65197572	+	888.6904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-91688.0	NM_008310	15557.0	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding	4.22285325715871	4.29533942725104	4.45773131882084	4.15439088121876	3.96031645260526	4.21015257579032	3.91810372253391	3.98371195980028	-0.686822113318332	0.0993040050890075	0.345652676694285
Merged-chr16-88372255-4	chr16	88372155	88372355	+	687.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81990.0	NM_001346964	14805.0	Mm.5134	NM_010348	ENSMUSG00000022935	Grik1	A830007B11Rik|D16Ium24|D16Ium24e|GluK1|GluK5|Glur-5|Glur5|Glurbeta1	glutamate receptor, ionotropic, kainate 1	protein-coding	4.18102052035413	4.09581302633287	4.35535357744486	4.63790469964888	4.22501451461429	3.9285213209535	4.16358667258913	4.22474845800625	-0.510655903662397	0.231563351128026	0.541117786275172
Merged-chr13-44480334-4	chr13	44480239	44480439	+	863.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40612.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	4.14838452559919	3.89252555864083	4.09899229690455	3.93439000663679	4.46618697369949	4.32510526276516	4.70627074092627	4.45071273301737	1.17956243306509	0.00253911907849924	0.0280945059674331
Merged-chr7-110205055-4	chr7	110204969	110205169	+	787.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-16634.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	3.53075416386737	3.4096790718128	3.74413026859694	3.64350177797354	3.64925834648447	3.45959997096407	3.72817153020735	3.96547571836122	0.379909875601842	0.439602801061122	0.727425871224001
Merged-chr8-26977694-3	chr8	26977589	26977789	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101502, intron 1 of 1)	CpG	353.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	5.37170647372033	5.96852476989542	5.4347196435352	4.99681918750216	5.71465083706621	5.78031759579565	5.67759374904554	5.96641986685977	0.513533526853286	0.110442015031671	0.366978089078026
Merged-chr11-121421339-4	chr11	121421252	121421452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181420)	promoter-TSS (NM_181420)	-21.0	NM_181420	238024.0	Mm.117394	NM_181420	ENSMUSG00000039253	Fn3krp	FN3K-RP	fructosamine 3 kinase related protein	protein-coding	7.58617154571688	7.79980565062693	7.25626430291228	7.35976778304954	7.38120411934302	7.36525788592096	7.62466134273668	7.2622975783594	-0.13364172990869	0.510358977762599	0.774681535183884
Merged-chr2-85246745-2	chr2	85246621	85246821	+	938.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50022.0	NM_001033346	241528.0	Mm.291095	NM_001033346	ENSMUSG00000075224	Lrrc55	A330097E02Rik|Gm351	leucine rich repeat containing 55	protein-coding	3.15307901858862	3.14250063736177	3.09384451973212	3.02012201034829	3.18705978892865	3.07442490531192	2.95668160444356	3.41367348614157	0.280034140665424	0.621557727658315	0.837882229782796
Merged-chr17-28204472-2	chr17	28204372	28204572	+	839.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172617, exon 14 of 15)	exon (NM_172617, exon 14 of 15)	-3306.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	2.73241735852619	2.69340356969936	2.90597964235059	2.56250890316238	2.54297679731435	2.63717965208787	2.59481697694449	2.73136611041985	-0.486143511888532	0.465493705136533	0.745939641415447
Merged-chr3-9350032-4	chr3	9349934	9350134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53044.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	6.12803194585242	5.85267293224141	6.48005600582252	6.73940321397082	5.60676910086285	4.95053048387297	5.84307596184825	5.63703473542127	-1.27223471855464	0.000139124099321966	0.00267858108348343
Merged-chr8-71660833-6	chr8	71660771	71660971	+	800.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 8 of 41)	intron (NM_001029873, intron 8 of 41)	10886.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	4.74366372798532	4.69942462371831	4.31107517677375	4.23354837291982	4.140724222595	4.39233225869751	4.2921262235846	4.7074595049326	-0.260972316410052	0.528128462376449	0.784805420065223
Merged-chr1-170864911-2	chr1	170864811	170865011	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 1 of 15)	MTD|LTR|ERVL-MaLR	2860.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	2.9995776285848	2.90704316447045	2.99992610321365	2.91374956686006	3.21816357238795	3.45575970160909	3.1118263637118	3.12202482264168	1.11718839788362	0.0466069138767789	0.221931597727806
Merged-chr2-24365466-3	chr2	24365339	24365539	+	765.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2236.0	NM_001355231	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	2.69134082836507	2.84776655373616	2.76147592270965	2.64306484699569	3.13626921257284	3.06120379405758	2.88072044396222	2.949870964609	1.26399714166289	0.036599278502969	0.190438374580926
Merged-chr1-36940538-4	chr1	36940438	36940638	+	867.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1011.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	4.19122277314924	4.25259356986321	4.32547281468002	4.01961326484117	4.03666586200254	4.49605648285913	4.34685764370278	4.27976532300552	0.248680132779277	0.539652703234363	0.792391982250617
Merged-chr7-63929313-4	chr7	63929169	63929369	+	975.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	9646.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	4.44154813804885	4.63362832322068	4.53451250838696	4.67764035924855	4.95947083176081	4.87521108132518	5.04712578186764	4.81084204315537	0.706137024394098	0.0357176453098618	0.187710150288737
Merged-chr13-24638647-3	chr13	24638527	24638727	+	754.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029679)	promoter-TSS (NM_029679)	-21.0	NM_001080381	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	3.49511149778342	3.22123455296385	3.33395291112758	3.60456738294133	3.32455505847104	3.25895128314513	3.32168272840766	3.38832676419773	-0.380783228176806	0.473976893301376	0.751519230337224
Merged-chr11-6292556-4	chr11	6292446	6292646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252288)	promoter-TSS (NM_001252288)	-12.0	NM_001252288	18293.0	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	5.64208353544457	5.70067373875888	5.67069738926695	5.94421910185878	6.19169986744682	5.7057795973943	6.09391918466623	6.2647879600598	0.517869019181711	0.0507120911487025	0.233497376018726
Merged-chr5-12184604-3	chr5	12184480	12184680	+	865.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-198586.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	3.42351717883328	3.1358438595109	3.48411808999696	3.77533200091256	3.63524621056899	3.54082874971206	4.20050989916175	3.42221019444104	0.769561676729817	0.186330490619345	0.484221175311953
Merged-chr12-40469141-4	chr12	40469028	40469228	+	968.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	23075.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	5.32497386647259	5.22472232584376	4.86194491749388	5.23079714842012	5.28012878618664	5.32034103813436	4.95274808573722	4.81829567469721	-0.113999468620415	0.727353251202117	0.89145735015007
Merged-chr5-90772454-4	chr5	90772356	90772556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019932)	promoter-TSS (NM_019932)	21.0	NM_019932	56744.0	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	6.72092066019378	6.54526184020363	6.70786661522628	6.8130774561817	6.68244823009726	6.33955510189976	6.72940768239646	5.9916105482306	-0.326929016495841	0.18404722716388	0.48125702884897
Merged-chr1-86416476-4	chr1	86416377	86416577	+	857.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9852.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	4.47318058573059	4.90304371351099	4.20218231001963	4.3133170239711	4.23502848982957	4.51943891742367	4.28037261751653	4.42956092897029	-0.308797826188627	0.450553206352359	0.735357832948579
Merged-chr3-144453855-4	chr3	144453743	144453943	+	885.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355234, intron 3 of 6)	intron (NM_001355234, intron 3 of 6)	116373.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	4.62292372410532	4.42383205094996	4.27670631486577	4.59083838226015	4.61974157327845	4.50177166176602	4.67502342034948	4.62064118665969	0.249744737705092	0.487894904785332	0.76110740386327
Merged-chr4-129036253-10	chr4	129036165	129036365	+	808.616638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-22006.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	3.81537079575232	3.85640689661136	3.43162185972975	3.31745952298167	3.91370652030041	3.54779439802954	3.84527737687047	3.66277799060551	0.41655359356321	0.416088884810858	0.710072021761014
Merged-chr17-24426628-4	chr17	24426527	24426727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010023)	promoter-TSS (NM_010023)	-56.0	NM_010023	13177.0	Mm.291743	NM_010023	ENSMUSG00000024132	Eci1	Dci|eci	enoyl-Coenzyme A delta isomerase 1	protein-coding	7.94657968329966	7.86012340553971	7.67620233525315	7.80013713562359	7.73899418857467	7.62296458472925	7.82588910453214	7.72862545292126	-0.119318459097654	0.473719253871207	0.751353302182328
Merged-chr13-55600009-4	chr13	55599911	55600111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001311137, exon 1 of 5)	5' UTR (NM_001311137, exon 1 of 5)	115.0	NM_001311137	218271.0	Mm.139825	NM_146045	ENSMUSG00000021504	B4galt7	-	xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)	protein-coding	5.81903085384235	6.02818563307883	6.06950672411464	5.88671437115371	5.90147630524695	6.02148227165378	6.27961672028125	6.10563327239068	0.20085420306008	0.409827298009258	0.70525942551561
Merged-chr9-116059290-4	chr9	116059188	116059388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028638, intron 14 of 14)	B3A|SINE|B2	116075.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	7.14808358885485	7.04713277758346	7.0788243812314	6.99390393002378	7.41562173515069	7.07462482743978	7.22237605727053	7.16694119731788	0.235543123449307	0.211150682170602	0.515762969934016
Merged-chr8-36549231-3	chr8	36549147	36549347	+	634.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	60056.0	NM_176952	319582.0	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L|Trmt9b	RIKEN cDNA 6430573F11 gene	protein-coding	3.3335633137405	3.51543354592963	3.4919617453447	3.49314318279236	2.94986262401323	3.05582128282876	3.01043102914852	3.48983688689581	-1.21569516017926	0.0396998336415215	0.200823996785577
Merged-chr13-73603979-4	chr13	73603859	73604059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146047)	promoter-TSS (NM_146047)	-43.0	NM_146047	218335.0	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	7.82679625740703	7.83196709544586	7.81263106695873	7.94180061149283	7.90167115463155	8.05829684934912	8.21502668126707	7.91893872654869	0.216708893694148	0.193613799968186	0.493774155067556
Merged-chr5-122344484-2	chr5	122344384	122344584	+	892.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144912, intron 4 of 10)	intron (NM_144912, intron 4 of 10)	9711.0	NM_144912	231724.0	Mm.255587	NM_144912	ENSMUSG00000038569	Rad9b	A630082N15Rik|BC021784	RAD9 checkpoint clamp component B	protein-coding	4.2225047358869	3.65515825324271	3.59077248251914	3.46514685503631	3.90497896656713	3.70947477408953	3.5771561711943	3.70051967038026	-0.0776259235910004	0.880613674293213	0.955181994949486
Merged-chr16-94502308-4	chr16	94502208	94502408	+	964.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 5 of 7)	intron (NM_007834, intron 5 of 7)	24321.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	5.2904039468667	4.9003404914497	5.42814998012691	5.99515766596595	4.3555383017433	4.71549242513299	4.93949072728363	5.22847117068885	-1.18775587646571	0.00373126577385861	0.0379248559927863
Merged-chr7-25681069-4	chr7	25680944	25681144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172148)	promoter-TSS (NM_172148)	-114.0	NM_172148	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	7.80656151013806	7.90720277132954	7.20672998881134	7.46124363521603	7.76932778606481	7.93957717676374	7.64488940115736	7.58307145802835	0.154532260591181	0.465885007172968	0.746235855024184
Merged-chr13-45911395-3	chr13	45911286	45911486	+	925.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	53605.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	4.40426204404092	4.07031722597518	4.37005523035563	3.90968631199411	3.83647295512041	3.45341566688778	3.77922797899458	3.73530716105872	-1.35614227455323	0.00599636129336188	0.054219385226144
Merged-chr1-64482300-4	chr1	64482240	64482440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger15a|DNA|TcMar-Tigger	-50464.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	5.98544406757136	5.85975291932164	6.18923686797416	5.94190927169691	6.17326827583419	5.94859593251962	6.11973685777283	5.93748813431498	0.0998718206734944	0.678933534563307	0.868233840147542
Merged-chr11-58103973-4	chr11	58103874	58104074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356477)	promoter-TSS (NM_001356477)	4.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	7.8947917361909	7.74600256197618	7.88898735550434	7.42127216536909	7.6583992818637	7.76973367574609	8.02972773640773	7.90489924207227	0.136746736465679	0.481066274677326	0.756340723375945
Merged-chr10-67113534-4	chr10	67113436	67113636	+	935.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13722.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	4.54385244295164	4.89686878512552	4.0970968582853	4.24030544097637	5.11425503029253	4.63445170713893	4.75257556292978	4.62333618328239	0.700754756022915	0.0872996532713512	0.322314540183698
Merged-chr10-118100798-4	chr10	118100693	118100893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40994.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	7.89050513732192	7.87108481697393	7.5077685753711	7.55342369489285	7.63027796326364	7.49359967705315	7.62017269916894	7.22023851943148	-0.274714303598113	0.162848522780687	0.452364775328072
Merged-chr8-46789612-4	chr8	46789495	46789695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	49850.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	6.91934217523719	6.70847541389738	6.44725584517922	6.9564385140466	6.54607101633639	6.62455901501734	6.41431180981756	6.59464998609138	-0.341918820046167	0.122551137292972	0.38801435544902
Merged-chr4-63560268-4	chr4	63560214	63560414	+	970.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144905)	promoter-TSS (NM_144905)	87.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	4.90421372705348	4.65497768983273	4.83560312218847	5.06916677952933	4.68604846372111	4.69017444745398	4.66256911875853	4.79622286287005	-0.372636757571764	0.274071014507754	0.585797931271454
Merged-chr1-159201424-4	chr1	159201302	159201502	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-30798.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	5.33227272287207	5.03265270337944	5.41558422526976	5.29603353887257	4.96585085423521	4.95344008176748	5.51357154193758	5.07941863291844	-0.23927196078239	0.456554814364138	0.739917647952291
Merged-chr4-135440277-4	chr4	135440177	135440377	+	939.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-6472.0	NM_022980	53902.0	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	4.55450092102895	4.01306021628243	4.31676505985453	4.14447977213045	4.6129259358972	4.40036650500623	3.95252554273596	4.39851620465493	0.253017013512186	0.554069721135664	0.800514120909256
Merged-chr12-4188388-4	chr12	4188296	4188496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 3 of 21)	intron (NM_001159537, intron 3 of 21)	45569.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	5.22647753682628	4.93125922670627	5.19661506359805	5.14143473359888	5.12087699653686	5.0583250649738	5.34381739526338	5.28304000365185	0.145420849458429	0.628933201859052	0.841850103289223
Merged-chr4-103114337-4	chr4	103114252	103114452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146254)	promoter-TSS (NM_146254)	-38.0	NM_027696	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	7.8046357638531	7.90526550245539	7.88320230898224	7.937134842331	8.14940349288318	8.01515748520842	8.56341259507179	8.09713236298762	0.435502661028529	0.0167336601644448	0.113339537239035
Merged-chr9-90232998-4	chr9	90232906	90233106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	37763.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	7.50871158840761	7.52864425595977	7.50072229849929	7.68915537878823	7.45213845309894	7.49841914065392	7.47296075343332	7.61938970312542	-0.0758179892407406	0.659397265674092	0.858262365203983
Merged-chr5-53187375-3	chr5	53187277	53187477	+	893.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172710, intron 3 of 23)	UCON28b|Unknown|Unknown	26075.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	4.21327641384222	3.8228868857811	4.67622263465858	4.59733229989235	3.72165429967713	3.81485144052193	3.90975826643455	3.75257764393018	-1.54659661873257	0.00138730229109317	0.0175454075536876
Merged-chr11-88949933-2	chr11	88949817	88950017	+	820.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029023, intron 2 of 12)	intron (NM_029023, intron 2 of 12)	5525.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	2.92224386761716	2.87871533764535	2.65156219316105	2.88510034853851	2.86838370676884	2.96744134808578	2.97115511633428	3.14488871555251	0.635418565842778	0.296465649097446	0.608494311834169
Merged-chr13-6649311-2	chr13	6649211	6649411	+	818.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291071)	promoter-TSS (NM_001291071)	-540.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	4.35613946915315	4.48813243092169	4.69432110458103	4.98435445825107	4.30171205748431	4.79033894545026	4.33794958727945	4.83126821813324	-0.189054050480171	0.643058904548801	0.849459897971419
Merged-chr5-43882286-4	chr5	43882192	43882392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	PB1D10|SINE|Alu	13483.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	7.81111027147963	7.659147988616	8.03501321597691	7.8258484620273	7.85079344370773	7.69999497133897	7.85541174267364	7.72859045192129	-0.0633783123342208	0.711629265975803	0.884537842013301
Merged-chr15-63996696-3	chr15	63996598	63996798	+	958.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	1368.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.68619138648917	3.39876871520095	4.02482329615531	3.97439354059507	3.683440356754	3.68866085798495	3.87382581110706	3.93460898892771	-0.00962000060246266	0.984524436488857	0.994316877108323
Merged-chr10-96163964-4	chr10	96163839	96164039	+	911.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62268.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	5.05068853683061	4.55989626525621	4.80412817480931	4.95738267511026	4.93871967039936	4.9795922712491	5.23174053101408	4.98224383763285	0.344727727633201	0.299331187069508	0.611562066856898
Merged-chr15-59653063-4	chr15	59652969	59653169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144549, intron 2 of 2)	intron (NM_144549, intron 2 of 2)	4415.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	6.91923660249066	7.30443941658841	6.9724928976018	6.99424469268709	7.01960612360079	7.13631764319544	6.78919674287261	6.77522231802094	-0.161877169204796	0.436483424471393	0.725136040855392
Merged-chr19-41982972-4	chr19	41982864	41983064	+	971.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	MIR3|SINE|MIR	1201.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	5.45229667921078	5.43449835245798	5.42744316846694	4.88717922170528	5.12275056167916	5.06029578007899	4.85838539915407	5.09820452958575	-0.492624528661032	0.139263004772208	0.414926442453497
Merged-chr2-155404837-4	chr2	155404730	155404930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242558, intron 9 of 12)	MIRb|SINE|MIR	22974.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	6.82178865041846	7.22072301011733	7.06915899041667	7.03530192730001	6.92208937878624	7.04180854391948	6.96113934077116	6.80385096200973	-0.157692794741584	0.424547726886671	0.716256995782564
Merged-chr2-72474301-3	chr2	72474238	72474438	+	837.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1881.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	3.24580338427989	3.1305836422915	3.1307339002111	3.1356375914078	3.47862176460857	3.11204112085418	3.05880633344235	3.12920066048182	0.219088044094835	0.697775688064422	0.87800480308191
Merged-chr3-69658390-4	chr3	69658286	69658486	+	736.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-59426.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	4.03994558342578	3.79064789149948	4.04056712862398	3.67973403077304	3.80421302212754	3.85347326069479	4.10968746828162	4.16779207450758	0.293931057071428	0.514600783638752	0.777136383820736
Merged-chr10-39960287-4	chr10	39960193	39960393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001173500)	promoter-TSS (NM_001173500)	-140.0	NM_001173500	100041085.0	Mm.332530	NM_001173500	ENSMUSG00000071335	Mfsd4b3	G630090E17Rik|Naglt1c	major facilitator superfamily domain containing 4B3	protein-coding	7.69696635912657	7.86271030673907	7.61261598424317	7.65460787607285	7.99233516880852	7.7077648568562	7.85873878063445	7.71759797304969	0.158186946639959	0.360838308639915	0.666081690111009
Merged-chr2-153558628-4	chr2	153558544	153558744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28673.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	5.82157136682652	6.32799308275712	6.00956408053919	5.41801346638031	6.25066913770221	6.32792766959053	6.1595181093311	5.86778629983396	0.373209925448741	0.206646305116596	0.510642650514914
Merged-chr14-77911599-4	chr14	77911493	77911693	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 1 of 11)	intron (NM_029495, intron 1 of 11)	7354.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	4.51217046313968	4.55606158666287	4.72435919712022	5.03045239464534	5.13434702352823	4.77755060250262	4.77735271454415	4.79693235307986	0.298630697007072	0.41494859510598	0.709411203608795
Merged-chr1-74661657-4	chr1	74661562	74661762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014974)	promoter-TSS (NM_001014974)	-92.0	NM_001014974	67534.0	Mm.260714	NM_001014974	ENSMUSG00000033257	Ttll4	4632407P03Rik|AI451681|mKIAA0173	tubulin tyrosine ligase-like family, member 4	protein-coding	7.44156907646386	7.63046561987748	7.74809376714332	7.82490179298097	7.57128128369062	7.54929903558905	7.7180520294057	7.37702687576142	-0.153717705233684	0.403702348891908	0.700922982752502
Merged-chr4-135406369-4	chr4	135406267	135406467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8140.0	NM_145555	230822.0	Mm.35548	NM_145555	ENSMUSG00000043924	Ncmap	A330049M08Rik|AA545175|Mp11	noncompact myelin associated protein	protein-coding	6.35657378380509	5.93313212285429	5.88889122697176	5.84409581017084	5.28804164625813	5.56479529761897	5.48091129622471	5.38099394874096	-0.981486130613198	0.000454977515479947	0.00714897231221791
Merged-chr11-102447660-3	chr11	102447533	102447733	+	984.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199200)	promoter-TSS (NM_199200)	30.0	NM_199200	217219.0	Mm.259924	NM_199200	ENSMUSG00000034685	Fam171a2	-	family with sequence similarity 171, member A2	protein-coding	4.6322647209463	4.70914567875562	4.42678440352783	4.80488698816754	4.97591842589551	4.41392004631457	4.31548170243652	4.17930245511603	-0.281552258069209	0.499681045259553	0.768441125779794
Merged-chr9-53667090-2	chr9	53667002	53667202	+	1000.0	f0_balb.idr|f0_c57.idr	exon (NM_027807, exon 1 of 19)	exon (NM_027807, exon 1 of 19)	405.0	NM_001161618	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	6.11555516049428	5.88400252920556	5.66582701864498	5.95617280303883	6.32521575837211	6.57175099263911	6.04450610219677	6.11226315723138	0.564915383355473	0.0269308229654076	0.155985763516539
Merged-chr19-44144474-4	chr19	44144374	44144574	+	946.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028607, intron 2 of 4)	intron (NM_028607, intron 2 of 4)	1972.0	NM_028607	73689.0	Mm.124685	NM_028607	ENSMUSG00000057506	Bloc1s2	2410089B13Rik|BLOS2|Bloc1s2a	biogenesis of lysosomal organelles complex-1, subunit 2	protein-coding	4.76036921911808	4.61209269349041	4.72582208661627	4.63761962137992	4.44236671849416	4.38295494079113	4.55263981891197	4.61046316320591	-0.403524211196488	0.252162948267942	0.563542923002808
Merged-chr12-91606818-3	chr12	91606726	91606926	+	759.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16339.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	3.25900849276674	3.40665798573768	3.32071613575315	3.83271236492727	3.4534495793274	3.37045094041196	3.47512675880479	3.31909640157438	-0.294076601094432	0.595446266494223	0.823936038156926
Merged-chr5-64794152-4	chr5	64794073	64794273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9350.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	6.47580855540121	6.40826462785464	5.91382015979027	6.61278322952306	6.41341235858147	6.34245280550108	6.30752431214399	6.18180310008114	-0.113597950048853	0.647485278613741	0.851667779256884
Merged-chr3-96501001-4	chr3	96500904	96501104	+	920.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24181.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	4.16377717155728	4.0826512613438	4.00768081799365	3.78775555770309	4.5542506638938	4.47842097134701	4.40992681482522	4.74490390467749	1.35181279975815	0.000574816228253608	0.00863364513839704
Merged-chr1-193201583-4	chr1	193201483	193201683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153137)	promoter-TSS (NM_153137)	-37.0	NM_153137	215243.0	Mm.261259	NM_153137	ENSMUSG00000037318	Traf3ip3	6030423D04Rik|AI115021|T3jam	TRAF3 interacting protein 3	protein-coding	6.96075074073413	6.89964013592799	7.03627339529186	7.37094031418565	6.78271886198201	6.62886448263251	7.09308074974661	6.85063697465239	-0.339465496987093	0.123667505083021	0.390081929498364
Merged-chr3-100998247-6	chr3	100998104	100998304	+	949.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167906, intron 8 of 8)	(GA)n|Simple_repeat|Simple_repeat	-28541.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	4.47422159726398	4.35214974510899	4.62343601420665	4.40836454066595	4.29600144495589	4.47942980544049	4.09609679978049	4.11056097274767	-0.498047544632631	0.203311050382937	0.506119583646595
Merged-chr6-34868493-4	chr6	34868399	34868599	+	957.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	5353.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	4.17270598901002	4.62464265924929	4.68328406587547	4.87766427911849	4.27901323028183	4.13291847491538	4.55206389449758	4.31825781476928	-0.685015999093828	0.0938928351252759	0.335232650049258
Merged-chr7-144907186-4	chr7	144907081	144907281	+	783.454163	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7919.0	NM_001357868	72284.0	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	4.15719590217895	4.21955731713524	3.84341345787652	4.23932223164895	4.38830014294918	4.28293596010888	4.27093610542371	4.10795061213267	0.338307291349627	0.4092373585681	0.704912662331359
Merged-chr5-64156396-4	chr5	64156292	64156492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3868.0	NM_019636	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	5.57351592263349	5.49397370604592	5.31760300152498	5.4869338855898	5.55875295197428	5.36244081669487	5.52048986523789	5.57056019832834	0.0636665822751507	0.813912728484616	0.928109035433692
Merged-chr4-83328212-4	chr4	83328132	83328332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4043.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	5.48462123977549	5.42234200528959	5.93146191674518	6.08270966080126	6.20782019745064	5.83869903820936	6.04629759231206	6.01267027993723	0.412351675599275	0.152789435257598	0.437201978379924
Merged-chr7-5112821-3	chr7	5112711	5112911	+	571.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145013, intron 2 of 2)	MTD|LTR|ERVL-MaLR	4100.0	NM_001145013	192658.0	Mm.28764	NM_138954	ENSMUSG00000035191	Rfpl4	D7Ertd486e|Rfpl4a	ret finger protein-like 4	protein-coding	3.06076713885637	2.90008074170943	3.22850938567303	3.03511429010223	2.56427439834745	2.90763421872238	3.26500830852378	3.11764654058633	-0.286321762921664	0.670588760541525	0.8642024686037
Merged-chr7-107277135-3	chr7	107277045	107277245	+	766.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	67700.0	NM_029660	76572.0	Mm.128134	NM_029660	ENSMUSG00000073894	Rbmxl2	1700012H05Rik|Hnrnpg-t	RNA binding motif protein, X-linked-like 2	protein-coding	4.41225745026452	4.32880222545951	4.26255535420281	4.65610592541185	3.13389261187232	3.78956413391236	3.45183396207392	3.46172884428322	-3.14443777195278	4.93646361494039e-08	2.25963050577391e-06
Merged-chr16-33687589-4	chr16	33687505	33687705	+	937.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 1 of 14)	intron (NM_175256, intron 1 of 14)	3139.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	4.46901183040829	4.63376815192573	4.59657460566685	4.95497601518774	4.64685674211112	4.4580613954121	4.57546994877602	4.70886210509874	-0.204203946941841	0.578646383577509	0.814851243157986
Merged-chr13-92335306-4	chr13	92335191	92335391	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311120, intron 8 of 23)	intron (NM_001311120, intron 8 of 23)	-19492.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	5.43119015067213	5.41369048879031	5.89549545293665	6.1007171669205	5.12934716818177	4.68387665954953	4.90015453577513	5.21556311860393	-1.3464999362281	8.91242543131796e-05	0.00184358480027835
Merged-chr16-77284416-3	chr16	77284314	77284514	+	865.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44914.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	3.46272825867925	3.65616858851961	3.52001198762917	4.09837445802425	3.31088771582124	3.24803130167082	3.79903028121852	3.27495591497039	-0.944749857807171	0.101207735346233	0.349224757719099
Merged-chr19-53421961-3	chr19	53421867	53422067	+	887.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31333.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	3.1908752467455	3.24399610853014	3.24355970257155	3.22029457604051	2.88902238087343	2.85648497893241	2.81558549402588	2.82224646186519	-1.68822474908416	0.00675656522589472	0.0593295776232371
Merged-chr7-110796803-4	chr7	110796693	110796893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009667, intron 6 of 14)	intron (NM_009667, intron 6 of 14)	24189.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	6.42885186656248	6.37315499370587	6.46178118846374	6.56420926467837	5.80733774678918	5.91994838234002	5.79093356449317	5.86740267370205	-0.96101295346005	2.77474982886753e-05	0.000679268142749621
Merged-chr11-32629916-4	chr11	32629821	32630021	+	890.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12634.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	3.96504490996103	3.7696034455968	4.21521377323824	4.07530708974865	4.42031037263574	4.38769729739696	4.44082651421578	4.38225034392557	0.960978668831513	0.0166656823019938	0.113040461270595
Merged-chr18-60481182-3	chr18	60481077	60481277	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134133, intron 1 of 1)	intron (NM_134133, intron 1 of 1)	20806.0	NM_134133	106878.0	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	4.68206000362516	4.98651867212974	4.82319320105496	5.45964032437177	4.16431990100959	4.09133617478908	3.9456169838889	3.89425288581907	-2.36022204370047	1.03056075400436e-07	4.40037695916473e-06
Merged-chr11-62602838-4	chr11	62602809	62603009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030738)	promoter-TSS (NR_030738)	32.0	NR_030738	69221.0	Mm.270874	NR_030738	ENSMUSG00000086841	2410006H16Rik	-	RIKEN cDNA 2410006H16 gene	ncRNA	7.5554383725448	8.39478241425648	7.56597624156818	7.16927952381609	7.83358123918863	8.2880877423767	7.73184724601625	7.53281986523598	0.158055649596016	0.574215389887035	0.81214635052993
Merged-chr4-126132415-2	chr4	126132310	126132510	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 6 of 10)	MIR3|SINE|MIR	-15593.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	3.55150045220325	3.47196947595221	3.75825958409662	3.4147232028463	3.37288926016087	3.66959572057431	3.64394009312052	3.84759375795375	0.291908559066313	0.559447232575445	0.803829196541868
Merged-chr7-46615800-4	chr7	46615727	46615927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013789, intron 7 of 10)	MIR3|SINE|MIR	23980.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	7.66879488764714	7.676776714483	7.75971894232775	7.85655067176767	7.6345943339491	7.72338002787584	7.74529592043334	7.93692230245537	0.0167700372946631	0.92187744581312	0.970986766828927
Merged-chr7-19927006-4	chr7	19926923	19927123	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5880.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	4.62810007648459	4.50613314816267	5.13818581645465	5.04991474334618	4.69298174944901	4.37397706073608	4.96561391987754	4.74529666618664	-0.314437164960463	0.412331241715193	0.707519131955945
Merged-chr6-54794542-3	chr6	54794476	54794676	+	728.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-22340.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	2.58784043139569	2.74165250169392	2.76292647656631	2.81245853745473	2.13603144093829	2.48991812396035	2.228263204204	2.23181666318377	-3.44826312970647	0.000657055833517247	0.009593554292087
Merged-chr4-126163247-2	chr4	126163147	126163347	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162533)	promoter-TSS (NM_001162533)	94.0	NM_001162533	66938.0	Mm.29813	NM_025856	ENSMUSG00000073758	Sh3d21	1700029G01Rik|AU019788	SH3 domain containing 21	protein-coding	4.04452348475512	4.43780950205448	4.24761852842974	4.00856796126816	4.52858877730832	4.42239079438685	4.2746172578623	4.71074185795335	0.730707725058583	0.0661618625966088	0.274005656470822
Merged-chr13-6889095-2	chr13	6888995	6889195	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C2|LTR|ERVK	-240324.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	3.12279291149013	3.12318512521026	3.12317615424622	2.91308630880713	3.42896610371099	3.23424691621637	3.28134620263604	3.12162616444548	0.828408813874219	0.133382936698026	0.406685116779986
Merged-chr14-103891023-4	chr14	103890957	103891157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46581.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	6.5852358050833	6.4137211912598	6.35028586326815	6.69042980273213	6.52955309496488	6.39071064453419	6.44080854416074	6.34575196316623	-0.140551901765138	0.522339202519714	0.781971587334536
Merged-chr13-96433907-3	chr13	96433807	96434007	+	949.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042714, intron 8 of 13)	intron (NM_001042714, intron 8 of 13)	37253.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	3.91814781138125	3.9695854917964	3.77970321497776	3.86276007029957	3.505433752852	3.62423209738924	3.370677532242	3.50621370446913	-1.21194045644333	0.0126661379896615	0.0933681685963255
Merged-chr8-120417242-2	chr8	120417142	120417342	+	752.083313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71624.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	3.14793779347339	2.87853945268752	3.09564798193152	2.92974718480019	2.6378554928132	2.82997327718055	2.91224359465022	2.85823061759278	-0.934818610942415	0.139367869116391	0.415117611241393
Merged-chr11-19024643-3	chr11	19024563	19024763	+	921.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5694.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	4.29195695687028	4.07675712580073	4.37635358898718	4.49191103792408	4.4290586303386	4.1795536541694	4.1848346460949	4.05330880706719	-0.240874035864972	0.556896370017098	0.802235069284239
Merged-chr3-88771611-4	chr3	88771481	88771681	+	875.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018804, intron 1 of 3)	intron (NM_018804, intron 1 of 3)	1018.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	4.57771205853436	4.63046601907517	4.57847007310428	3.69533196721714	4.54109008430086	4.82540943387638	4.25421107963521	4.57540431900729	0.322331521234676	0.482015651153485	0.756947271620127
Merged-chr17-78362537-4	chr17	78362441	78362641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 13 of 16)	intron (NM_015800, intron 13 of 16)	55611.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	6.91847125905356	6.5819235456983	7.13289446401608	7.22932722634375	6.80786072519778	6.74163855711171	6.79115491918896	6.62571115413644	-0.354111648238594	0.115510517674776	0.376082844093537
Merged-chr9-44799361-3	chr9	44799234	44799434	+	883.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357383)	promoter-TSS (NM_001357383)	-87.0	NM_001357383	71687.0	Mm.41409	NM_027865	ENSMUSG00000002032	Tmem25	0610039J01Rik|AI429491	transmembrane protein 25	protein-coding	3.49263527527271	3.36877701328551	3.43658720955637	3.61613167282052	3.41859531571438	3.7667034858118	3.47958136735484	3.49121200597081	0.164184490724601	0.744153848643617	0.89923574268619
Merged-chr6-129499798-3	chr6	129499725	129499925	+	845.388916	f0_balb.idr|f1_balb.idr	intron (NM_138648, intron 3 of 7)	intron (NM_138648, intron 3 of 7)	7340.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	3.34619041241215	3.28017755724691	3.14390408578291	2.71561584047917	2.75566031232761	2.71758305285042	2.75588063329291	3.02723786676936	-1.40960547658871	0.0397756038734659	0.201050114196096
Merged-chr2-30078153-4	chr2	30078036	30078236	+	851.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153805)	promoter-TSS (NM_153805)	-562.0	NM_153805	263803.0	Mm.233843	NM_153805	ENSMUSG00000026785	Pkn3	AW209115|BC034126	protein kinase N3	protein-coding	3.40710434229196	3.65647675239779	3.40751761630435	3.64028853991557	3.53362500120043	3.45882665748918	3.66155294509694	3.62546724460731	0.0922565942608983	0.851720336883608	0.944100387750672
Merged-chr9-87098247-3	chr9	87098148	87098348	+	619.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46058.0	NM_001177731	244958.0	Mm.335337	NM_001101482	ENSMUSG00000042761	Mrap2	BB633055	melanocortin 2 receptor accessory protein 2	protein-coding	3.40100134231414	3.4281454392916	3.61315654682413	3.4965691963375	3.50195615700729	3.18674416806819	3.59776761669361	3.4558813639812	-0.130899613885763	0.799096503136585	0.922415224636476
Merged-chr7-48788984-4	chr7	48788899	48789099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028031)	promoter-TSS (NM_028031)	-4.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	7.13556195577385	7.2899191359285	6.92158551297108	7.15214389406685	7.20293322863247	7.02862525891622	7.55293822331421	7.16619727398993	0.161447158160848	0.430501108918535	0.721108120456474
Merged-chr7-140998014-4	chr7	140997907	140998107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12737.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	6.27775612617354	6.25765391494202	6.0828290240322	6.05205725588646	6.02345699673689	5.89674001346264	6.35057576634132	6.3448986887505	0.00256522301406809	0.991618730409196	0.996772106195311
Merged-chr19-44107454-4	chr19	44107303	44107503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007700)	promoter-TSS (NM_007700)	74.0	NM_007700	12675.0	Mm.3996	NM_007700	ENSMUSG00000025199	Chuk	AI256658|Chuk1|Fbx24|Fbxo24|IKBKA|IKK alpha|IKK1|Ikka|NFKBIKA	conserved helix-loop-helix ubiquitous kinase	protein-coding	7.14450167841782	7.17670226974205	6.94383000825982	6.90201034992065	6.81690742075341	6.92627197552001	6.93410894194496	6.63424000141056	-0.291440742473369	0.148561039331787	0.430379577476485
Merged-chr2-155357507-4	chr2	155357424	155357624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004721)	promoter-TSS (NM_001004721)	-100.0	NM_001004721	228812.0	Mm.5434	NM_001004721	ENSMUSG00000038383	Pigu	5430426F17Rik|BC028278|Cdc91l1	phosphatidylinositol glycan anchor biosynthesis, class U	protein-coding	7.11505846622206	7.49485274902964	6.71483835742435	7.26124558296706	7.36546432716723	7.16927732791536	7.24618292183164	7.1691751241785	0.0796065889024668	0.71653666973738	0.886642970902717
Merged-chr8-125061139-3	chr8	125061067	125061267	+	851.194458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 1 of 12)	RLTR40|LTR|ERVK	6972.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	2.94006966793921	2.72157001128596	2.94037625653307	2.81308875317471	3.49381080258205	3.44618433927698	3.65185164073817	3.62407413946277	2.74805880530417	3.00039066239984e-06	9.44559075448732e-05
Merged-chr1-182489929-4	chr1	182489818	182490018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009794, intron 6 of 20)	intron (NM_009794, intron 6 of 20)	27692.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	7.23658398582455	7.08332157197178	6.65081910252077	7.43077435999974	7.12841170031126	7.31491440044484	7.38862114328995	6.91975451438834	0.0749357556523823	0.749059446663561	0.901187172003694
Merged-chr13-5592639-4	chr13	5592526	5592726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	265466.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	6.76936459251309	6.35614180860686	6.79715195921997	7.09165481454781	6.05244691443237	6.33855028137373	6.45165434858263	6.15508871493485	-0.789081259456438	0.00173860029095377	0.0209748864592879
Merged-chr4-59360887-4	chr4	59360787	59360987	+	808.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 10 of 16)	L1MC4|LINE|L1	77746.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	3.85782063435562	3.7126302267176	3.49221079374318	3.86256592036267	3.97589845443051	4.18178265081337	4.28479451008212	4.30276946004011	1.17721240327404	0.00942530039544245	0.0756777729100054
Merged-chr19-5473880-4	chr19	5473781	5473981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164352)	promoter-TSS (NM_001164352)	-809.0	NM_021474	58859.0	Mm.276367	NM_021474	ENSMUSG00000024909	Efemp2	0610011K11Rik|Fbln4|MBP1	epidermal growth factor-containing fibulin-like extracellular matrix protein 2	protein-coding	5.70413834643674	5.46024959770757	5.60397158910282	5.56658876483804	5.8792151826361	5.66951290312466	5.54933452839069	5.46116339025529	0.132120257049707	0.626210296870263	0.840349205482018
Merged-chr7-119720720-4	chr7	119720585	119720785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145585, exon 2 of 5)	exon (NM_145585, exon 2 of 5)	2934.0	NM_145585	233802.0	Mm.26392	NM_145585	ENSMUSG00000030942	Thumpd1	6330575P11Rik	THUMP domain containing 1	protein-coding	6.06866224674909	6.29928423016475	6.25275364845333	6.089167770845	6.40038291364728	6.30986902986042	6.328918947682	6.19021802214614	0.209705045252823	0.350028981498034	0.657553783954832
Merged-chr2-27503820-4	chr2	27503736	27503936	+	789.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	-11311.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	3.81292855846137	3.80490630367788	4.0081450533851	3.86065121523404	3.72130506967087	3.82236452984649	3.99052751887054	4.09211271861494	0.105003691231555	0.812672809339669	0.927656717651261
Merged-chr4-40723206-4	chr4	40723079	40723279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_077221)	promoter-TSS (NR_077221)	249.0	NM_001164672	15502.0	Mm.27897	NM_008298	ENSMUSG00000028410	Dnaja1	HSJ-2|Hsj2|Nedd7	DnaJ heat shock protein family (Hsp40) member A1	protein-coding	6.51110035324913	7.31483321987256	6.723148721767	6.66347117489957	6.67407125370515	6.72491466141547	6.88151552670677	6.91169446865672	-0.0603099830983836	0.805614862774845	0.92521045259115
Merged-chr10-56106838-4	chr10	56106741	56106941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163833)	promoter-TSS (NM_001163833)	-76.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	7.04571505580159	7.4626925054396	7.15697722017584	7.47239721908649	7.44977481976289	7.4351392023217	7.12108976968268	7.2313180878727	0.013854635127226	0.945604938217768	0.980594795823631
Merged-chr4-142005532-4	chr4	142005432	142005632	+	819.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 1 of 31)	intron (NM_177868, intron 1 of 31)	6119.0	NM_177868	329977.0	Mm.252019	NM_028429	ENSMUSG00000051435	Fhad1	2900090M10Rik|B230311F11	forkhead-associated (FHA) phosphopeptide binding domain 1	protein-coding	4.1091646095712	4.01629562487989	3.81839399442955	3.72040165601586	4.3448765075126	3.99211932237317	3.69325552734897	4.10723605021609	0.410851273504802	0.376409077188196	0.679172347306585
Merged-chr17-71195892-4	chr17	71195778	71195978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	-8776.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	5.74208900594831	5.38148577676785	5.71944729161514	5.6513045998103	5.72646387852568	5.79403923316074	5.36773524117737	5.32754378674407	-0.0909984016805514	0.749934639320005	0.901564247164595
Merged-chr12-111732711-4	chr12	111732641	111732841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163388, intron 4 of 5)	intron (NM_001163388, intron 4 of 5)	19472.0	NM_026511	68020.0	Mm.425762	NM_026511	ENSMUSG00000037787	Apopt1	1700081D05Rik|2810002N01Rik|Apop-1|Apop1	apoptogenic, mitochondrial 1	protein-coding	5.57964375643565	5.36713983649807	5.04021847943667	5.53588025437941	5.98899775117823	5.40212181455743	5.57787066825177	5.49648467194357	0.419557012951804	0.17362730817316	0.46772742904204
Merged-chr14-33324793-4	chr14	33324700	33324900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 4 of 10)	intron (NM_153800, intron 4 of 10)	86224.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	6.0588327618362	5.69380644905963	6.13656874715068	6.48918826933275	5.54329964613566	5.54894856399844	5.46892784688508	5.71771310582215	-0.924731149808422	0.00133642181772065	0.017020069522909
Merged-chr1-82797246-4	chr1	82797151	82797351	+	769.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-28795.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	3.98622921681825	4.16807192618175	4.31913000102748	3.41589980633703	4.59255842560366	4.64616666298842	4.07270269548976	4.08810842639389	0.908448829403881	0.0661865279743854	0.274075913356727
Merged-chr13-118386786-3	chr13	118386702	118386902	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021556, exon 1 of 5)	exon (NM_021556, exon 1 of 5)	450.0	NM_021556	59054.0	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding	4.82133727246221	4.29629197284458	4.85961265409456	4.8964515729958	5.00263139836852	5.10460760480953	5.15775537179158	5.06045049759678	0.657008717730988	0.0575986190994448	0.251908578118549
Merged-chr15-6557119-4	chr15	6557010	6557210	+	962.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22737.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	6.02104664824765	5.67698091584725	6.1301249057629	6.17602581281526	5.03796231853226	4.98106775380029	5.49177586123638	4.83409907931206	-1.57363051110443	4.97856043248398e-07	1.84663341857101e-05
Merged-chr15-81594394-4	chr15	81594309	81594509	+	860.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177821, intron 1 of 30)	intron (NM_177821, intron 1 of 30)	8195.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	4.08087411256788	4.25910431618204	4.03212965915879	4.20759821343104	4.05964652876327	3.93485678770465	4.15645561534189	4.41654582796228	-0.00370912372887586	0.992886096106254	0.997440362361293
Merged-chr13-119790874-4	chr13	119790765	119790965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028245)	promoter-TSS (NM_028245)	-59.0	NM_001302549	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	7.6387951379547	7.82334306343632	7.71824297824767	7.77194194659756	8.11885145699551	7.98528965423624	8.46017372944893	8.08819667797353	0.559867478009295	0.00155391868259222	0.0192258609261658
Merged-chr4-156032050-5	chr4	156031893	156032093	+	901.1333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CACG)n|Simple_repeat|Simple_repeat	5671.0	NM_021985	21936.0	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	3.08574946523812	3.12024109464314	3.22851381041635	2.66970833889758	3.8432344806975	3.54000745691345	4.07296790592534	3.6830075114723	2.87113625990762	1.23494922306528e-06	4.24402051930363e-05
Merged-chr7-19890050-2	chr7	19889950	19890150	+	837.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2085.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	2.96055693180257	3.26573055271464	3.02531588923543	3.03547457334286	3.2629762367797	3.19599654707927	3.1342921028766	3.08547790689921	0.385845244212009	0.49156332659082	0.763101917589757
Merged-chr2-164859836-4	chr2	164859754	164859954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-2146.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	6.50403368229047	6.2993637665847	6.59770288020998	6.70045109362116	6.30262079632055	6.20212901559723	6.26446300614702	6.06528219246539	-0.486043775536374	0.0333558927883747	0.179543998014268
Merged-chr6-129366072-4	chr6	129365971	129366171	+	949.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177686)	TTS (NM_177686)	15827.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	4.86147316440862	5.07074046099201	4.71500433403361	4.73618739980236	4.90838044146173	4.68114122508926	4.65378303119992	4.54574071612731	-0.280444783625504	0.421662188948555	0.714113896289924
Merged-chr16-91358930-2	chr16	91358830	91359030	+	968.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-13853.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	2.97912852680114	3.09205501705835	3.1995306840827	2.64607090936489	3.60948418845934	3.92216443438007	3.68772311493202	3.79317861373748	2.98083565223849	5.18141699220204e-07	1.91688191313903e-05
Merged-chr15-76351216-4	chr15	76351128	76351328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164608)	promoter-TSS (NM_001164608)	-66.0	NM_001164607	68877.0	Mm.289680	NM_026859	ENSMUSG00000022553	Maf1	1110068E11Rik|AU042856	MAF1 homolog, negative regulator of RNA polymerase III	protein-coding	8.2098693612977	8.30932508845192	8.24615586727311	8.09488719371731	8.39237581842379	8.33453640404712	8.06802089950312	7.96562279395654	-0.00965134971051505	0.955642542765662	0.98428084377376
Merged-chr1-183439220-3	chr1	183439129	183439329	+	976.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19981.0	NM_001308052	78772.0	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	4.32718963628421	3.99476291814389	3.6159104127309	4.09409245853729	3.6880986252858	3.85693737954192	3.77805072323822	4.17085641995577	-0.413923439556028	0.389794405571867	0.690041185689413
Merged-chr2-167007054-4	chr2	167006961	167007161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8252.0	NM_153065	228889.0	Mm.295031	NM_153065	ENSMUSG00000017999	Ddx27	C86129	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding	7.2787314745915	7.25400544766425	7.06369610734508	7.06185894738534	7.39374796614585	7.05449803081039	7.28463868697922	7.37526383600654	0.17151700083325	0.366291779291161	0.670809284319229
Merged-chr6-37605100-3	chr6	37605012	37605212	+	741.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74939.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	3.5809249525346	3.24739306760451	3.41216578348692	3.7734445638246	3.59345635359064	3.69781748575686	3.51379593178258	3.63113616469531	0.242230233784804	0.640223481930083	0.848037046355902
Merged-chr11-98708722-4	chr11	98708615	98708815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361995, intron 19 of 25)	L1MB2|LINE|L1	7402.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	7.16932235954916	7.443039579343	7.23727547936823	6.92701135912199	7.22718378116862	7.45665031055847	6.84109065953767	7.45918656994867	0.0910450292709856	0.684759945823066	0.870914954532591
Merged-chr1-64377960-4	chr1	64377861	64378061	+	996.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-154843.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	5.17725669456471	4.81792958537569	5.17813845327342	5.71608033574558	5.39947468671733	4.66307899804494	5.35751030437575	5.20618787323288	-0.159157398055792	0.674210038093634	0.866066237777098
Merged-chr17-46650493-4	chr17	46650403	46650603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001316742)	TTS (NM_001316742)	165.0	NM_025611	66515.0	Mm.329078	NM_025611	ENSMUSG00000038545	Cul7	2510004L20Rik|AA409809|C230011P08Rik|p185|p193	cullin 7	protein-coding	6.06538609100177	6.12226480792415	6.12498067786707	5.78222282769141	5.78446843677624	5.90103877947985	5.81917152536829	5.6110299601357	-0.37767268338719	0.141062183944058	0.417798729724146
Merged-chr12-108641187-4	chr12	108641087	108641287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	5434.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	6.47620879491858	6.40922261192376	6.60830085648025	6.6781731073577	6.51104190966815	6.3879984965722	6.88771343332934	6.6934881465358	0.112316599324348	0.615824162649964	0.83467255086626
Merged-chr6-134919530-2	chr6	134919431	134919631	+	845.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009875)	promoter-TSS (NM_009875)	-870.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	2.5780498891521	2.61751729348298	2.5076789861411	2.41514144118273	2.70126416490764	2.87878201288149	2.69930151712271	2.76864340879316	1.20712243580595	0.0624819150844394	0.264678940296097
Merged-chr4-119174294-4	chr4	119174195	119174395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183140)	promoter-TSS (NM_183140)	-100.0	NM_001145936	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	8.3068202421298	8.40013156017553	8.25673459496314	8.55027425810443	8.28059389012895	8.32471883134962	8.56605399075696	8.16062447144911	-0.0620993708413046	0.713839891401598	0.885507313176618
Merged-chr4-132306177-4	chr4	132306078	132306278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-2500.0	NR_029468	100039864.0	Mm.258912	NR_029468	ENSMUSG00000086290	Snhg12	2310005L22Rik	small nucleolar RNA host gene 12	ncRNA	5.88390359498755	5.44618132378976	6.01539579691814	6.03162539702988	6.17369878244052	5.53459106167964	5.92143603592168	5.99028454011921	0.104547719328146	0.715724688425939	0.886371710249844
Merged-chr19-6235898-4	chr19	6235795	6235995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198168)	promoter-TSS (NM_198168)	-55.0	NM_198168	225849.0	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	6.90783289000784	7.12081493596404	6.80935975304932	6.87828565704872	7.28249505780605	7.24023735430445	7.27837093434194	7.19586497408315	0.435170548559632	0.0198367510251378	0.127375742103589
Merged-chr14-66223824-4	chr14	66223725	66223925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-10001.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	7.84071304076115	8.06729533351291	8.01788836082785	7.91145941462164	7.82504251215398	7.84128622674215	7.83388935013485	7.86657179037082	-0.155571005089335	0.330341171055038	0.641796043873533
Merged-chr7-16192550-4	chr7	16192425	16192625	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17130.0	NR_102730	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	3.96512594595135	3.89454733508116	4.01362151008506	3.78380233910211	4.1167879432209	4.08845663863529	4.16956601158638	3.69362193508266	0.343086773488745	0.43434157765584	0.723638301522951
Merged-chr16-36817512-4	chr16	36817410	36817610	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134111, intron 2 of 5)	intron (NM_134111, intron 2 of 5)	-8805.0	NM_001113405	106389.0	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	5.28669897262054	5.06858425012656	4.97426584258578	5.07205366956687	5.05553719451534	5.1484106136236	5.01901539560012	4.77987973034967	-0.180073806960513	0.565951574752121	0.807783748011785
Merged-chr9-119445969-4	chr9	119445878	119446078	+	823.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153321, intron 3 of 7)	intron (NR_153321, intron 3 of 7)	1018.0	NR_153319	208194.0	Mm.101578	NM_172456	ENSMUSG00000042787	Exog	AW557704|ENGL-B|ENGL-a|Endogl1|Endogl2|Engl|Engla|Englb	endo/exonuclease (5'-3'), endonuclease G-like	protein-coding	4.29374387770221	4.08009698312691	4.78800145615555	4.74514610702392	4.94578915118434	4.65548094105798	4.65899463865929	4.43378219492608	0.373627349041972	0.365438448590819	0.670176057822016
Merged-chr11-103115406-4	chr11	103115311	103115511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138753)	promoter-TSS (NM_138753)	-914.0	NM_138753	192231.0	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	5.96663636596666	6.03305460943835	5.53403142224409	5.68103869557421	5.61826253672114	5.59216476387146	5.32271667361553	5.90081321794105	-0.316330455676195	0.270907398535958	0.582688717263196
Merged-chr12-38778701-4	chr12	38778627	38778827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1355.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	7.43715174797518	7.64120143874064	7.21993350627585	7.31064169212574	7.45056260769574	7.50593133441987	7.59509215299943	7.05777816808694	0.0106566431752701	0.95836635991471	0.985161436127615
Merged-chr16-4079499-6	chr16	4079437	4079637	+	837.327759	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1727.0	NM_026508	68015.0	Mm.123366	NM_026508	ENSMUSG00000005981	Trap1	2410002K23Rik|HSP75	TNF receptor-associated protein 1	protein-coding	4.5634268317442	4.37000529330251	4.3909358632965	4.58211352997725	4.47728027033469	4.69617671041724	4.76330357497598	4.74889699422707	0.397364666451482	0.267248843078682	0.578913439530787
Merged-chr13-64375888-4	chr13	64375792	64375992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5372.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	5.80063997458656	6.12097117486529	6.15374595550187	5.32949152067114	5.695383963862	5.77202323599606	5.98957104594039	5.4098028676721	-0.239868110096965	0.44837689600714	0.73368496417573
Merged-chr6-100833562-4	chr6	100833480	100833680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182939)	promoter-TSS (NM_182939)	-58.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	7.33786187777427	7.29082137960756	7.12739428530201	7.52942907164396	7.47805038634929	7.25555854795318	7.54349213160701	7.34422817205126	0.0969300244687242	0.611656883646054	0.832433898415756
Merged-chr5-73286806-4	chr5	73286700	73286900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2616.0	NR_040687	72276.0	Mm.271215	NR_040687	ENSMUSG00000100175	1700025M24Rik	-	RIKEN cDNA 1700025M24 gene	ncRNA	6.22595579742023	6.23083754352219	6.3762585230695	6.6022990377413	6.35068730072774	6.04278095040355	6.63829581973621	6.20266529166379	-0.0749634252616913	0.762822033056782	0.907011913026374
Merged-chr4-133609906-4	chr4	133609810	133610010	+	815.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 7 of 7)	intron (NM_001017968, intron 7 of 7)	-7742.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	3.76917893413795	3.99225445533582	4.03456927292789	3.63963722999126	3.7777239103833	4.57320655445138	4.1516592243016	4.03207108716925	0.791889731944591	0.0922227213136452	0.332162566488162
Merged-chr12-79016228-2	chr12	79016222	79016422	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9045.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	2.53433836629153	2.74245184981883	2.59223035735718	2.22962767688775	1.95032158115165	2.05888690444049	2.03842066135114	2.12364366602326	-4.71444375993068	7.36603493465956e-05	0.00156696652903208
Merged-chr5-136962155-4	chr5	136962063	136962263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025562)	promoter-TSS (NM_025562)	86.0	NM_025562	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	6.39956618076096	6.27411955424366	6.58656108424574	6.08752040243412	5.83820696364553	6.21186571611418	6.11037877775854	6.1577808472492	-0.394547038143934	0.114596168982028	0.37446310383904
Merged-chr11-115177975-4	chr11	115177862	115178062	+	852.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012030, intron 3 of 5)	intron (NM_012030, intron 3 of 5)	9354.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	4.48849826425599	4.11444296305622	3.78474361371552	4.30763655013421	4.25098099817482	4.18873876695552	4.04725026563418	4.37320533957294	0.042645017638459	0.92165117750097	0.9709178534782
Merged-chr14-120325811-4	chr14	120325722	120325922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	19370.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	6.97513990247604	6.64910750076174	6.77903110142611	7.11054810302998	6.93931681796992	6.47895881452181	6.80005790626757	6.60690726068492	-0.242650591245044	0.283223175349186	0.59534411429271
Merged-chr8-123254192-4	chr8	123254098	123254298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020497)	promoter-TSS (NM_020497)	3.0	NM_020497	57247.0	Mm.379084	NM_020497	ENSMUSG00000001065	Zfp276	AW048709|D8Ertd370e|D8Ertd377e|Znf276	zinc finger protein (C2H2 type) 276	protein-coding	6.33288376121493	6.17913888751933	5.77298710151813	6.05279141195362	6.63909079952631	6.49172982433676	6.63258435216459	6.41700773260153	0.678658413888734	0.00361042425232118	0.0369445640966028
Merged-chr6-116767879-2	chr6	116767779	116767979	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51121.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	3.04481591951467	2.88837212310668	2.78848915157569	3.07332737867202	2.85682199741988	3.03108227861508	3.08991135660827	3.15487535796424	0.304343486538715	0.612146769740568	0.832680684364583
Merged-chr2-78059934-3	chr2	78059824	78060024	+	725.955566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_108098, intron 1 of 6)	intron (NR_108098, intron 1 of 6)	8747.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	3.75769752317632	3.9089637252212	3.86013729443298	3.68709396622019	3.69913203706075	3.76609174353197	4.14343941925264	3.64572194035938	0.0761327853350279	0.870186629678068	0.951261027372314
Merged-chr1-55521291-3	chr1	55521195	55521395	+	650.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	115349.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	3.04916314529618	3.19125725122288	3.41439234570651	3.41738309185633	3.4648303982502	3.29350958448585	3.23316555451837	3.56194875704437	0.394149227964929	0.473523722659985	0.751231191670671
Merged-chr6-100357163-4	chr6	100357043	100357243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-69785.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	6.83289787483131	6.92070936681217	6.50957494449347	6.92217468263855	6.71923261383059	6.80423453086507	6.74394230135523	6.86943557360557	-0.0489912032161912	0.81308822698756	0.92779311801644
Merged-chr10-17416336-4	chr10	17416227	17416427	+	837.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-306901.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	4.43014398035347	4.60863546142103	4.91961455952215	4.68070788932713	4.51156494430132	4.8134494297242	4.73144921037175	4.42813631719455	-0.101765954812407	0.780161335467182	0.914348108890036
Merged-chr14-64858541-4	chr14	64858450	64858650	+	861.8624880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 5 of 9)	intron (NM_177338, intron 5 of 9)	91307.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	3.59759627287568	3.73167221651391	3.92875356843877	4.16068349709608	3.84477165047928	4.05047811893157	4.09115341295552	3.87687856057485	0.210109564641965	0.655887410196047	0.856391692651398
Merged-chr15-79400356-4	chr15	79400269	79400469	+	941.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172608, intron 1 of 8)	intron (NM_172608, intron 1 of 8)	2550.0	NM_001253817	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	4.73381787696086	4.60856113249321	4.20736993676894	4.3045563845763	4.42160603544634	4.38450545255822	4.23833047233744	4.51507521737882	-0.181183960408237	0.644126264092031	0.850082962136934
Merged-chr1-161070776-4	chr1	161070686	161070886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131028)	promoter-TSS (NR_131028)	19.0	NR_131029	70454.0	Mm.248212	NM_027429	ENSMUSG00000026708	Cenpl	2610300B10Rik|AW121806|AW550697|CENP-L	centromere protein L	protein-coding	8.63828141969294	8.85014893854722	8.80683386904876	8.79967703001464	8.80150222758099	8.9926202865457	9.01679525197675	8.64780138027368	0.117837536721203	0.454686785782911	0.738469190098157
Merged-chr19-23520787-1	chr19	23520687	23520887	+	593.0	f0_c57.idr	Intergenic	L3|LINE|CR1	-72465.0	NM_174857	71738.0	Mm.50841	NM_174857	ENSMUSG00000033207	Mamdc2	1200015L10Rik|AI591564|mamcan	MAM domain containing 2	protein-coding	2.85490879945787	3.16024654672557	2.85514698722652	2.9170311909812	3.62805769198858	3.5141444953849	3.83802527740541	3.59846232986047	2.56155302994564	1.51689361002829e-05	0.000399448650640782
Merged-chr17-27057116-4	chr17	27057034	27057234	+	952.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080553)	promoter-TSS (NM_080553)	-170.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	5.30126216083845	5.37271021181547	5.43475146054897	5.05951761802727	4.64251386970277	5.19682330867338	5.0310624175602	4.56402003368047	-0.800915293076396	0.0206422942954974	0.130813556415528
Merged-chr17-26649701-3	chr17	26649592	26649792	+	772.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 9 of 9)	intron (NM_026170, intron 9 of 9)	-26704.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	3.29312533313848	3.23115444050728	3.40388173762393	3.32372626049246	3.25645668048107	3.21769893417837	3.33699038798012	3.45344435985172	0.0139517511335174	0.97867740700535	0.992495571226332
Merged-chr8-95037185-4	chr8	95037095	95037295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173036, intron 8 of 11)	intron (NM_173036, intron 8 of 11)	-17908.0	NM_001042715	330830.0	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	6.75149853994513	6.84853060100467	6.56854390611057	6.76135407828995	6.94316115139122	6.27404247714884	6.85289677329042	6.65923765401712	-0.0294632743400664	0.897850260547457	0.961848256332607
Merged-chr11-117150646-4	chr11	117150545	117150745	+	887.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001166506, exon 12 of 16)	exon (NM_001166506, exon 12 of 16)	35473.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	4.54548881866054	4.17729546580786	3.96379224400778	4.4308277855573	3.96677048587932	4.03288143511707	3.72122100649256	4.11058214626625	-0.881443073651295	0.0477181913232308	0.225337990437648
Merged-chr16-38395311-4	chr16	38395202	38395402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_134102)	TTS (NM_134102)	33112.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	6.20256088228051	5.92872850925455	6.47813469683745	6.29622419802742	6.62095578766132	6.6034265714282	6.61304349957723	6.31618528195273	0.452648885450152	0.0535693963460433	0.241590069220998
Merged-chr11-32226502-4	chr11	32226396	32226596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010822)	promoter-TSS (NM_010822)	-9.0	NM_010822	268395.0	Mm.263161	NM_010822	ENSMUSG00000020287	Mpg	9830006D05|AI326268|APNG|Aag|Mid1	N-methylpurine-DNA glycosylase	protein-coding	6.95217629614289	7.04596627670294	6.5894767668082	7.05468673317238	6.82158744449957	6.83258963446554	6.97962513250455	6.77245817437468	-0.113775127414106	0.585179989449377	0.818019059737303
Merged-chr4-46087699-2	chr4	46087600	46087800	+	732.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_021883, intron 4 of 9)	intron (NM_021883, intron 4 of 9)	48478.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	3.60525893681372	3.36552790122887	3.09866553467499	2.94932178367981	3.03040695158614	2.93322588542967	2.95883061588185	3.15774682499868	-0.989135681368405	0.112589135707859	0.371040985475911
Merged-chr4-129820710-4	chr4	129820605	129820805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164745)	promoter-TSS (NM_001164745)	-3.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	6.38885921810913	6.42240234175222	6.10743354733351	6.05461844389969	6.30892017675759	6.07949141694013	6.15758781529676	6.29829685406339	-0.0360122177719678	0.879628398669346	0.954928715033537
Merged-chr13-25562874-3	chr13	25562767	25562967	+	958.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-292871.0	NM_009513	22360.0	Mm.4766	NM_009513	ENSMUSG00000048978	Nrsn1	Neurensin-1|Neuro-p24|Vmp	neurensin 1	protein-coding	3.18387987877735	3.14919420812145	3.58562495323278	3.45631955206749	3.35875428632105	3.42558099470421	3.57018469735241	3.63170613568046	0.464498907129987	0.383872194509215	0.685555904565125
Merged-chr2-71027097-4	chr2	71026994	71027194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	RLTR30B_MM|LTR|ERV1	-8720.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	6.5992201107705	6.79307621831181	6.5516781188759	7.00619252214095	6.46161623304601	6.5521779215277	6.92286809614896	6.35052295076204	-0.25322924483126	0.288352503664868	0.600376446715098
Merged-chr11-53737221-4	chr11	53737109	53737309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16415.0	NM_010558	16191.0	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	6.14627934840496	6.30263932303772	5.75932217353483	5.66364538768421	6.39322545004443	6.37952965283061	5.9033582485084	5.92942102674448	0.296899826091708	0.297812309521967	0.609987985766329
Merged-chr6-17749190-4	chr6	17749099	17749299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083315)	promoter-TSS (NM_001083315)	29.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	5.28899760237856	5.73052497169248	5.70442640229205	5.62000776749054	5.8839037625744	5.71980409892683	6.16748275833946	5.70038331745809	0.46404584019555	0.0911571067261196	0.329916698004701
Merged-chr6-124834699-4	chr6	124834554	124834754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013538)	TTS (NM_013538)	4478.0	NM_013538	14793.0	Mm.285723	NM_013538	ENSMUSG00000023505	Cdca3	2410005A12Rik|C8|Grcc8|Tome-1	cell division cycle associated 3	protein-coding	7.21784062645242	6.95671190580617	7.39476409169372	7.45236725659553	7.15556512638979	7.19236815604881	7.44164646406819	7.37995891961188	0.0254565432715619	0.900245870643793	0.963037675111283
Merged-chr5-100674155-4	chr5	100673955	100674155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027978, exon 1 of 7)	exon (NM_027978, exon 1 of 7)	201.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	5.06052200308021	5.66502381279404	5.76163055175105	4.51904153698074	5.22611512755634	5.09057650547199	5.29390971484356	5.22586647013853	-0.230836475929259	0.558737824729553	0.803345041538902
Merged-chr1-136142528-3	chr1	136142435	136142635	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	11145.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	5.88133769621353	6.09468344287428	6.08584262710264	5.91944037244713	6.14246095058326	6.15325970568841	6.38172670965276	6.23823979749869	0.365128923778161	0.115571080517424	0.376203493087054
Merged-chr6-140715155-4	chr6	140715066	140715266	+	832.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88281.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	4.02767708510456	3.96082703007312	4.07771424656167	4.32040323993477	3.92365472515437	4.29681424666854	4.23908275782981	4.25574675702818	0.152707946215747	0.719818432410788	0.888028373825666
Merged-chr12-83862014-4	chr12	83861896	83862096	+	926.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073564, intron 2 of 12)	intron (NR_073564, intron 2 of 12)	14816.0	NM_001272056	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	3.88503339602876	4.37028040247714	4.2356704081814	4.19723942407645	4.25814199156548	3.94956347871764	3.81286383003148	4.64015687622437	0.057004768768155	0.902378993230653	0.963784202016155
Merged-chr2-21091186-4	chr2	21091094	21091294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114171.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	6.30474637190744	6.18539907360864	6.24951981967769	6.42488282442803	6.27782375643924	5.97234707263263	6.34461177713428	6.53502686444315	-0.00351714474021207	0.988137550781984	0.995370064932717
Merged-chr1-181842460-4	chr1	181842358	181842558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133815)	promoter-TSS (NM_133815)	-57.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	8.20246612879348	8.27309075296966	8.12380591568285	8.23949546122145	8.21531819156971	8.30144199807704	8.39271628909427	8.03298041520913	0.0365690630441463	0.819951749954891	0.931087306128284
Merged-chr1-86582676-4	chr1	86582602	86582802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172974)	promoter-TSS (NM_172974)	83.0	NM_001360816	18582.0	Mm.12925	NM_008801	ENSMUSG00000026239	Pde6d	AI841218|PrBP/delta	phosphodiesterase 6D, cGMP-specific, rod, delta	protein-coding	7.13212124107072	6.95854273805967	7.73971000535235	7.0120151849378	7.01543771238063	7.1229427338317	6.96278486291549	7.40885598899664	-0.144887135593449	0.550568294023037	0.798665130029057
Merged-chr12-39200101-3	chr12	39199989	39200189	+	725.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	416378.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	2.94045116623658	2.96897129053276	2.82521497274594	3.05050987956452	2.84261001435327	2.65956957552403	2.47638225362792	2.55645788817797	-1.48834109237053	0.0382232902813747	0.195960635140796
Merged-chr17-71474801-1	chr17	71474701	71474901	+	949.0	f0_balb.idr	intron (NM_028887, intron 1 of 47)	CpG	542.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	4.49471290349096	4.67746439786735	4.49541750862626	4.40862997771795	4.27659789924798	4.71266731990654	4.87731915767215	4.86631776114841	0.387810059537058	0.304997345231499	0.617499479135937
Merged-chr1-60070877-4	chr1	60070786	60070986	+	991.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27021.0	NM_021312	57750.0	Mm.281079	NM_021312	ENSMUSG00000026019	Wdr12	4933402C23Rik|Ytm1|Ytm1p	WD repeat domain 12	protein-coding	5.34017610602743	5.21204714759359	4.92309177612619	4.36107850496765	5.37306553740588	5.20825611442453	5.17019371750025	5.19250454853093	0.460749085530261	0.213212166812832	0.518455480376146
Merged-chr16-33348192-4	chr16	33348109	33348309	+	813.483337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32527.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	4.22288925286117	4.17395717526912	4.07574702145867	4.34009636727274	4.28495041297681	4.25228405635465	4.52840942344825	4.47320999122755	0.405846681176191	0.29858702339588	0.610739553961186
Merged-chr6-125350679-4	chr6	125350583	125350783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	960.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	5.16615680573358	5.23477260682854	5.13298114286665	5.03996995205242	5.62216663664231	5.63729137227502	5.29836421563454	5.29116566583051	0.614205165696916	0.0347009213301823	0.184395437055696
Merged-chr19-34921730-3	chr19	34921627	34921827	+	895.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362434)	promoter-TSS (NM_001362434)	-631.0	NM_001362434	240641.0	Mm.278471	NM_183046	ENSMUSG00000024795	Kif20b	33cex|C330014J10Rik|MPP1|Mphosph1|magoo	kinesin family member 20B	protein-coding	3.77800584336557	3.87842022092487	3.9675043300969	3.5516084846371	3.72641068514923	3.61173946294037	3.71158833051441	3.87418937238287	-0.167233053975106	0.723498854710839	0.889624450832197
Merged-chr7-133744611-8	chr7	133744517	133744717	+	837.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357685, intron 3 of 11)	intron (NM_001357685, intron 3 of 11)	15652.0	NM_001286030	101437.0	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	4.0735589659791	3.65606175734727	4.91756540896442	3.933363123551	4.14745064850638	4.09363333904428	4.55994116646767	4.35057494401069	0.152934361848629	0.768764782375776	0.909421779038148
Merged-chr12-38815153-3	chr12	38815054	38815254	+	819.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163154, intron 2 of 9)	intron (NM_001163154, intron 2 of 9)	31443.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	3.23769274382294	2.97129666750406	3.13299491048568	3.0664914270316	2.92323374088468	2.85510118246528	3.1739050147038	2.88928606772689	-0.577355700997522	0.334230090819643	0.644805241742718
Merged-chr13-23598157-3	chr13	23598043	23598243	+	893.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177653, intron 1 of 1)	intron (NM_001177653, intron 1 of 1)	-12173.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	4.1413213887833	4.17588889411999	3.91129074968294	3.91322039275368	3.9001072213301	3.98067329383764	3.73590397732863	3.90903139242306	-0.419138832749856	0.337970375838513	0.647718939249696
Merged-chr14-122048779-2	chr14	122048679	122048879	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14105.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	2.77855882666345	2.51159402128207	3.06876312604835	2.82072046348857	2.68373572504645	2.88657712017023	2.89161992707893	2.84087819063927	0.0806682103452317	0.902639080630564	0.963848753135321
Merged-chr10-67290184-4	chr10	67290083	67290283	+	807.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-4902.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	4.00487092318503	4.28534992844437	4.24590078800791	3.90436799412966	4.17862383429906	4.07566415161411	4.63081266476223	4.15244922524347	0.41934522808048	0.32639824382798	0.637923349237677
Merged-chr5-114702794-4	chr5	114702684	114702884	+	768.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4995.0	NM_029992	77832.0	Mm.239698	NM_029992	ENSMUSG00000002486	Tchp	A930031F18Rik|AV279199	trichoplein, keratin filament binding	protein-coding	4.42189697715336	4.20355862840636	4.69198278473928	4.779964883385	4.42601312358301	4.20689991123038	4.44470750278271	4.61811007443547	-0.283033041169491	0.478231658045686	0.754333448301065
Merged-chr6-134066295-4	chr6	134066192	134066392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	MLT2B2|LTR|ERVL	30592.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	6.74286421381754	7.07654351529314	6.84419943238072	6.95897563144244	6.89122163494094	6.96461011848283	6.88905241542238	6.58094249928134	-0.107671772568641	0.601461402969461	0.827114010857096
Merged-chr2-128127451-4	chr2	128127365	128127565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284410)	promoter-TSS (NM_001284410)	-110.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	8.35397412895806	8.42053935394826	8.49757868299522	8.23196952229103	8.41716366113367	8.27039608177961	8.45825357199952	8.11366093589087	-0.0635182226663677	0.69967977929962	0.878893620590623
Merged-chr9-58246251-4	chr9	58246159	58246359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008884, intron 2 of 7)	intron (NM_008884, intron 2 of 7)	3527.0	NM_008884	18854.0	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	6.02485949425389	5.77884458270275	5.65169058295265	5.82876675309255	5.84532580168776	5.59321975269394	5.93340011848817	6.15445861679959	0.114386581971406	0.664427372479812	0.86098920325767
Merged-chr1-144002149-3	chr1	144002005	144002205	+	925.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009061, intron 4 of 4)	intron (NM_009061, intron 4 of 4)	2044.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	3.80200077167837	3.70068884256116	3.51660115305582	3.46860811298357	3.90165026901888	3.81556837544317	4.1389651760507	4.03427575866279	1.0509254485732	0.0211302443950886	0.132782702021542
Merged-chr3-95739559-4	chr3	95739470	95739670	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252653)	promoter-TSS (NM_001252653)	-1.0	NM_001252653	13601.0	Mm.3433	NM_007899	ENSMUSG00000028108	Ecm1	AI663821|p85	extracellular matrix protein 1	protein-coding	5.00100770125942	4.91478296540463	5.09486159278245	4.91712208051453	4.62999571289119	4.62792513850431	5.0694936545439	4.49215155283747	-0.525035900922853	0.130692745763064	0.402410609652443
Merged-chr10-99203753-4	chr10	99203664	99203864	+	961.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59467.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	4.8526078384304	4.79768056314031	4.95932510610949	5.41062722130089	4.77186103634127	4.78960843317045	4.4995202806708	5.0218632559756	-0.533577216791518	0.14662157936903	0.427055299038717
Merged-chr10-78600110-4	chr10	78600014	78600214	+	919.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-8150.0	NM_027875	71709.0	Mm.86439	NM_027875	ENSMUSG00000032714	Syde1	1200008N06Rik|BB043000|mSYD1A	synapse defective 1, Rho GTPase, homolog 1 (C. elegans)	protein-coding	3.43678406793233	4.15816414507651	3.83309952551294	4.17848897521041	4.45716111900361	4.11908445364846	4.24896015767279	4.26600574871997	0.848569163436848	0.0872401643808083	0.322166079470611
Merged-chr19-40391737-2	chr19	40391637	40391837	+	890.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034962, intron 5 of 22)	intron (NM_001034962, intron 5 of 22)	10573.0	NM_001034964	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	3.24300254669892	3.1339942000607	3.184729594873	3.47542727475868	3.29908677630078	3.29468187221349	3.2314911461706	3.12183628422199	-0.143322265963347	0.795620125509667	0.920897975671128
Merged-chr8-70617800-6	chr8	70617720	70617920	+	857.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153074, exon 2 of 3)	exon (NM_153074, exon 2 of 3)	976.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	3.63049681893518	3.65900136382335	3.99740986789313	3.63419440566158	4.14242829875833	4.02499730271167	3.93377194900267	3.9485864060374	0.818227021446795	0.0650059562181991	0.27123062965651
Merged-chr6-125515675-4	chr6	125515557	125515757	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20897.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	5.01143636173593	4.53582098198197	5.18048336114989	4.86030126373311	4.78515182903864	4.21113130349999	4.56602099893855	4.35546487620908	-0.854095976217778	0.0319589186335795	0.17460883247003
Merged-chr12-105705975-3	chr12	105705873	105706073	+	757.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030187)	promoter-TSS (NM_030187)	-9.0	NM_030187	78801.0	Mm.36006	NM_030187	ENSMUSG00000041323	Ak7	4930502N02Rik|AK 7	adenylate kinase 7	protein-coding	3.54934083884713	3.61486656656092	3.76145543895106	3.54019140101332	3.66555390895445	3.82980498489448	3.88150245591457	3.48970763118261	0.340681841014835	0.473248992445385	0.751076459932416
Merged-chr9-53705709-5	chr9	53705571	53705771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175562, intron 1 of 1)	CpG	561.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	4.94341305617078	5.56914853635862	5.72082338503295	5.08885283959793	5.38833590970646	5.6484285666504	5.33464208087661	5.35767489149629	0.132120673040606	0.685921764658537	0.871746528364059
Merged-chr2-145823863-3	chr2	145823776	145823976	+	856.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	37760.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	3.37498492249479	3.29587849964817	3.20524486259517	3.4701261101221	2.98379465438889	3.2536736853954	3.36180426545327	3.26282012810849	-0.486125993526664	0.381651358155349	0.683861748681093
Merged-chr6-52825728-4	chr6	52825617	52825817	+	968.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 2 of 4)	intron (NM_173406, intron 2 of 4)	83903.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	5.16248696945815	5.53063660222673	5.53885628941126	5.36181343341645	5.17658369722469	5.57993559152336	5.06971543114744	4.94095162806672	-0.355563652954236	0.258648327225508	0.570489393947544
Merged-chr2-131204699-4	chr2	131204606	131204806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5654.0	NM_001291032	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	7.2730183866153	7.01249842687033	7.25396240159662	6.78955294617098	6.95942541594704	6.92046554559782	6.90646401407447	7.01309600785004	-0.181024696779121	0.385862916197397	0.687291098196235
Merged-chr2-103566268-4	chr2	103566181	103566381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178890)	promoter-TSS (NM_178890)	-29.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	6.96695087866622	6.9881019489371	7.17154605727859	7.28218650289318	6.91846202891313	6.82269446906527	7.33822063563136	7.01412640372093	-0.109882937276242	0.602325930712962	0.827599363412438
Merged-chr2-29869078-4	chr2	29868957	29869157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207298)	promoter-TSS (NM_207298)	-437.0	NM_207298	99151.0	Mm.296336	NM_207298	ENSMUSG00000039787	Cercam	2600006K01Rik|AL024097|Ceecam1	cerebral endothelial cell adhesion molecule	protein-coding	5.82664810073762	5.91100788787361	5.31474933692115	5.67440004453621	5.61342119030102	5.39154166533163	5.84121957555894	5.43742684342971	-0.194832263459503	0.501975261234936	0.769457185302407
Merged-chr15-84853908-3	chr15	84853778	84853978	+	928.2666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356573, intron 2 of 12)	CpG	1221.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	3.58195317470464	3.16572563228612	3.39340949999149	3.6664062116442	4.00943054347714	4.10907790553508	3.87751585980381	3.93804251421328	1.4944629524007	0.00391081359715699	0.039373097741448
Merged-chr16-64770919-4	chr16	64770774	64770974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026273)	promoter-TSS (NM_026273)	65.0	NM_026273	67609.0	Mm.212157	NM_026273	ENSMUSG00000059920	4930453N24Rik	AI649104|din	RIKEN cDNA 4930453N24 gene	protein-coding	5.49490097033445	5.88287160589892	6.15989636832554	5.39494784650923	5.61074556221869	5.98849702963602	5.8299583137267	5.68683639168421	0.0403541273744464	0.89345064004115	0.960198745413613
Merged-chr4-85591246-4	chr4	85591147	85591347	+	978.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	385791.0	NM_019535	20404.0	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	4.91722802895565	4.96651750174533	4.65235138719293	5.11271464058635	5.63333701988182	5.58640053917826	5.69671589205492	5.40942024193495	1.15921698675924	0.000174415884612953	0.0032456858172197
Merged-chr7-3617363-4	chr7	3617266	3617466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025348)	promoter-TSS (NM_025348)	-7.0	NM_025348	66091.0	Mm.17851	NM_025348	ENSMUSG00000035674	Ndufa3	1010001M12Rik|1700022J01Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3	protein-coding	5.90931554134525	5.694780813501	5.79065254538753	5.86944864797133	6.07460775896168	6.0854537033243	6.02988895816198	6.05656463954302	0.381484682500475	0.1072460293081	0.361305619089418
Merged-chr2-32488849-3	chr2	32488741	32488941	+	993.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37371.0	NM_146118	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	4.13693279081417	4.09939728498898	3.51672255371915	3.8834692151536	3.77596511162786	3.69919223001357	3.89713424314286	4.09328482606033	-0.158213957837314	0.741191290074779	0.898139463026673
Merged-chr9-118041781-4	chr9	118041669	118041869	+	771.1750490000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286507, intron 1 of 6)	intron (NM_001286507, intron 1 of 6)	1247.0	NM_013727	27215.0	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	3.76563679143805	3.75089555568939	3.71458431608252	3.84591148777818	3.66026050423619	3.46733308057174	3.89218251938322	3.86113883124333	-0.132421748657426	0.777657708475088	0.913308661236298
Merged-chr17-36162540-4	chr17	36162437	36162637	+	852.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_033517)	TTS (NR_033517)	6000.0	NM_001081032	667977.0	Mm.441651	NM_001081032	ENSMUSG00000073402	Gm8909	EG667977|H2-Tw5l|H2-gs17	predicted gene 8909	protein-coding	3.147735686835	3.58471731689024	3.28772993643408	3.68589260378824	3.83678364916954	3.46653772307785	3.89191389544041	3.5825391743477	0.786759631513003	0.1582061736241	0.445101416370722
Merged-chr19-46484750-4	chr19	46484653	46484853	+	845.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 11 of 11)	intron (NM_001025391, intron 11 of 11)	-16895.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	3.85778549711444	3.97821632328105	3.52623049433095	3.60661310750503	4.01771482670908	3.76454201805838	3.84198489970841	3.85606269768553	0.376114885571416	0.418596263642648	0.711970738842506
Merged-chr4-131975328-4	chr4	131975228	131975428	+	969.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 10 of 20)	intron (NM_183428, intron 10 of 20)	53557.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	5.44749030697243	4.56462532338232	5.0017256373589	5.42104869120106	4.99686671464972	4.98893820424477	5.26174459557926	5.16526391075161	-0.111647984297992	0.757663224763255	0.904815773586341
Merged-chr15-38342927-3	chr15	38342831	38343031	+	815.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-42220.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	3.1912704118006	3.09926473889547	3.54311785095359	3.54403672569901	3.36566466206197	3.49373179102213	3.47658670477589	3.73085559524159	0.509257590689837	0.35370382691526	0.66051560970873
Merged-chr3-126621492-3	chr3	126621438	126621638	+	871.9166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	24587.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	3.48963673987375	3.31300967104489	3.61608942265558	3.15750129895605	4.11411897617969	4.01411649132183	4.28212180778842	4.19014012967487	2.34090059160673	7.3294475349715e-07	2.63087617797144e-05
Merged-chr5-66088886-4	chr5	66088793	66088993	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	9286.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.68961248896703	6.31858344523104	5.3594675723735	5.14202463356164	6.12488723155756	6.44940125469406	6.00615996353701	5.48592975454092	0.560408304929272	0.125629875065265	0.393583137203806
Merged-chr6-113418791-3	chr6	113418737	113418937	+	894.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001346511, exon 2 of 9)	exon (NM_001346511, exon 2 of 9)	503.0	NM_001033204	101122.0	Mm.31204	NM_001033204	ENSMUSG00000051169	Rpusd3	AI527266	RNA pseudouridylate synthase domain containing 3	protein-coding	3.90660227104979	3.96927158694479	3.99566543139782	3.61832073797134	3.46535226752887	3.45821963910402	3.58416046753766	3.90476110464337	-0.790987634568677	0.114237723036984	0.373837784954674
Merged-chr17-24540559-4	chr17	24540465	24540665	+	837.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6818.0	NM_177375	328778.0	Mm.266033	NM_177375	ENSMUSG00000079657	Rab26	A830020M03Rik	RAB26, member RAS oncogene family	protein-coding	5.14274467491286	4.49713440859225	4.36523901731009	4.17694429610662	4.98524118614307	4.72257629079957	4.68328770408456	4.36256750576451	0.258918203550344	0.548040410917977	0.797187190409426
Merged-chr14-63128562-2	chr14	63128462	63128662	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	6100.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	5.53026803955478	6.12663078303879	6.03046283480952	5.94775010308554	5.91988135796086	5.93142614840874	5.67373804415478	6.14405887896758	-0.00740328908570337	0.978039471866479	0.992205923377531
Merged-chr1-180850887-4	chr1	180850790	180850990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145943)	promoter-TSS (NM_145943)	-261.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	8.26183051484903	8.61473940815752	8.18217009226015	8.15378877500885	8.8167640549305	8.96575828140921	9.10013620357021	8.74976087430744	0.751370795240447	2.22960290244273e-05	0.000560780583014031
Merged-chr19-32881657-3	chr19	32881603	32881803	+	735.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124126.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	3.26993881354749	3.29037235656111	3.32436716637183	3.22119180532482	3.27194411905152	3.0678175543987	3.20212735593699	3.02726451599475	-0.466301401818611	0.399081389635302	0.697153444089019
Merged-chr2-167949393-4	chr2	167949292	167949492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	17065.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	6.50384745727817	6.41350093635997	7.23189763765088	7.12816962914598	6.20806924024962	5.96779134780542	6.17290522159053	6.46648707726879	-0.960056846073891	0.000520885711333263	0.00797679088790669
Merged-chr5-123135888-6	chr5	123135843	123136043	+	988.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3314.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	4.59562501162912	4.61784839458517	4.39009765129783	4.27196816494663	4.30091416675012	4.51948581358192	4.45619150037683	4.80080644678984	0.137243149187215	0.720853012451341	0.88846247810902
Merged-chr15-66559301-3	chr15	66559208	66559408	+	832.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172514, exon 2 of 10)	exon (NM_172514, exon 2 of 10)	1738.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	3.08798825742705	3.1230699445116	3.55928805056162	3.44921971165994	3.3341876867451	3.57224524332582	3.38858245460028	3.5571381157776	0.470420828793491	0.391101160140686	0.690974191471137
Merged-chr10-93680849-3	chr10	93680736	93680936	+	789.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038017, intron 1 of 5)	intron (NR_038017, intron 1 of 5)	2486.0	NR_038017	100504069.0	Mm.391412	NR_038017	ENSMUSG00000085723	Gm15915	-	predicted gene 15915	ncRNA	4.05723210225756	3.93260356044142	3.80845700425245	3.96656867345517	3.76368552917227	3.92917685150198	4.2832885510266	3.96144615881502	0.13031775065534	0.768421938119985	0.909356419531329
Merged-chr10-60287455-4	chr10	60287355	60287555	+	889.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	2994.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	3.74374196593789	3.30635531244848	3.58877718766453	3.94809903939387	3.72769333805854	3.52646075173061	3.4613304546037	3.83589877691373	-0.093636399535851	0.859115507980021	0.946629595100632
Merged-chr8-94364873-4	chr8	94364782	94364982	+	913.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 24 of 24)	intron (NM_019415, intron 24 of 24)	-21547.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	4.45787293875519	4.96622606173071	4.45855899064496	4.25830350482326	4.62086496194043	5.0949405803817	4.89997946105149	4.81955618760235	0.647729927639643	0.091753094735747	0.331178879878866
Merged-chr8-10835827-4	chr8	10835748	10835948	+	825.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46606.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	4.3982486769496	4.77253578565735	4.21167576054573	4.35818976856128	4.08345026097248	4.48419279607022	4.54087929334795	4.63379851644683	-0.0183079422535182	0.964220575584355	0.987306728614525
Merged-chr7-104353440-4	chr7	104353343	104353543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175677)	promoter-TSS (NM_175677)	-85.0	NM_001146007	319236.0	Mm.425502	NM_175677	ENSMUSG00000057143	Trim12c	9230105E10Rik|Trim12-2	tripartite motif-containing 12C	protein-coding	7.57436311029952	7.5575980838606	7.45585018365626	7.36706724278817	7.75506023842642	7.42367702396981	7.98918301827338	7.22923698363007	0.198075985006814	0.353018932079586	0.659906317421994
Merged-chr17-32040476-4	chr17	32040383	32040583	+	976.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028244, intron 1 of 15)	RSINE1|SINE|B4	4321.0	NM_028244	72462.0	Mm.102761	NM_028244	ENSMUSG00000058392	Rrp1b	2600005C20Rik|D030064A17|Kiaa0179|mKIAA0179	ribosomal RNA processing 1 homolog B (S. cerevisiae)	protein-coding	5.4368935340427	4.73951363245708	5.35520638936689	5.49774695746355	4.94605460533351	4.97520528022075	5.51189571248925	5.48615473458846	-0.0750935196258654	0.8331966081497	0.936237948428556
Merged-chr7-104446522-4	chr7	104446422	104446622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357467)	promoter-TSS (NM_001357467)	-397.0	NM_001357467	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	6.44452025489701	6.35265718116295	5.93095381602493	6.1658889265803	6.29753535355697	6.24652942809715	6.46021109745223	6.0432517076026	0.0558246283639577	0.818591049683038	0.930451480329292
Merged-chr17-43568959-2	chr17	43568854	43569054	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	503.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	4.4985528256948	4.36276974049171	4.60393774693997	4.12538373491695	3.89959501604623	4.24651502981605	3.94808197082675	3.96173525036086	-0.979359239270902	0.0230545655323719	0.140580906367575
Merged-chr13-54838747-3	chr13	54838669	54838869	+	789.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49364.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	3.31737706392534	3.37965052343982	3.37260427404368	3.07453046871618	3.16000070774827	3.3131093936049	3.12761327578955	3.42310351138328	-0.0900013824368915	0.869947217097828	0.951167769555096
Merged-chr13-81767226-3	chr13	81767103	81767303	+	865.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie8|DNA|hAT-Charlie	-16044.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	3.65969563930059	3.75203613069084	3.5578372756394	3.54125118957601	3.22380010325462	3.3729613084627	3.69220408887655	3.38549903660104	-0.678793410937457	0.19057778977458	0.489910668437461
Merged-chr14-50871485-1	chr14	50871385	50871585	+	624.0	f1_c57bl6.idr	promoter-TSS (NM_009351)	promoter-TSS (NM_009351)	-931.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	2.64507818094019	2.87512142783921	2.71919327396761	2.88180125054366	2.79298267685881	2.96472645777253	3.18253405767075	3.19493855615205	1.07009901960415	0.0935654346055016	0.334634412108582
Merged-chr6-127374975-2	chr6	127374875	127375075	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67008.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	2.84096542608289	2.57721689239806	2.72820687267164	2.50456099514581	2.55716279012482	2.64215320623616	2.30982337401772	2.60275175054002	-0.681926761961061	0.341410862759304	0.650445218284962
Merged-chr1-80655377-4	chr1	80655290	80655490	+	962.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	9962.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	4.8004994769413	4.8961307478321	4.55225786309916	5.13792994363639	4.88491148973297	4.81701641063585	4.95303506767611	4.83527459765539	-0.0242183315838071	0.944231054882819	0.979960985786931
Merged-chr16-17558151-3	chr16	17558038	17558238	+	947.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145435, intron 4 of 7)	intron (NM_001145435, intron 4 of 7)	3109.0	NM_029053	74685.0	Mm.38634	NM_029053	ENSMUSG00000022759	Lrrc74b	4930451C15Rik|mCG12354|mCP17390	leucine rich repeat containing 74B	protein-coding	4.00149608307026	3.79718615596075	3.53304774033908	3.9955774260261	4.19793448987747	3.64935769538003	3.581442707613	3.76058646676797	-0.0475597951677816	0.925485414803075	0.972503515835845
Merged-chr2-168197771-3	chr2	168197674	168197874	+	820.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132310, intron 9 of 11)	intron (NR_132310, intron 9 of 11)	9338.0	NM_009628	11538.0	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	3.91537458793822	3.8786740747405	3.59201091321298	3.42681437529756	4.17115093074487	3.582327574283	3.69432482752091	4.28298221677292	0.733180958350832	0.151473798605843	0.435151693545033
Merged-chr7-73527434-4	chr7	73527331	73527531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	14315.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	5.96647671773893	5.76631161545156	5.7255984150192	6.02809557010764	6.06706820258739	6.12038817713234	5.98013823114652	6.10859589626586	0.281456643323096	0.247069674136326	0.558168726560377
Merged-chr16-30596336-4	chr16	30596237	30596437	+	906.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3386.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	4.3193446529965	4.46843735714073	4.51489055014927	4.18948948360557	4.2071032760905	3.99378602111793	3.91403161385327	4.27446286910798	-0.648188782571157	0.119160149196224	0.38190374944411
Merged-chr4-20033508-4	chr4	20033418	20033618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-8534.0	NM_010281	14590.0	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	5.38429673952916	5.7698921464919	5.25999533105851	4.68823149319561	5.75252524339614	5.77753961750396	5.26613818943768	5.57461748403434	0.495195429326075	0.163367666257589	0.45299365471558
Merged-chr17-35516921-4	chr17	35516809	35517009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146248)	promoter-TSS (NM_146248)	-85.0	NM_025674	106795.0	Mm.11434	NM_025674	ENSMUSG00000050410	Tcf19	5730403J10Rik|AW495861	transcription factor 19	protein-coding	6.35790540698399	7.05817916457582	6.32027428264203	6.59786333287834	6.66826550955534	6.88290702650294	6.43556468348712	6.54860153061312	0.0274622428225964	0.913857332980836	0.967694418307962
Merged-chr1-180318682-4	chr1	180318608	180318808	+	865.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11768.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	4.04581847599859	4.09718044443448	4.35611398688536	4.03757025298612	4.23387668074017	4.06422424260119	4.21391947541391	4.27270868718465	0.176603571891752	0.661177076883631	0.859233242450522
Merged-chr19-29805885-6	chr19	29805736	29805936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172836, exon 1 of 8)	exon (NM_172836, exon 1 of 8)	173.0	NM_172836	240613.0	Mm.313351	NM_172836	ENSMUSG00000046138	9930021J03Rik	Gm9832|mKIAA2026	RIKEN cDNA 9930021J03 gene	protein-coding	4.49913373142656	4.85083018863619	5.11558236859395	4.44874451010779	4.59398612188671	4.80871744621293	4.72977901214631	5.11197594260981	0.154602691237055	0.684793633417336	0.870914954532591
Merged-chr7-80995895-4	chr7	80995775	80995975	+	797.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178707, intron 1 of 9)	L2c|LINE|L2	2191.0	NM_178707	233410.0	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	A730014M16Rik|Znf592	zinc finger protein 592	protein-coding	3.68498995239284	3.69129538335564	3.62949259391311	3.96677168825424	3.76458041100757	3.85766976681009	3.67125285364897	3.97566169279612	0.156563401963866	0.738479632843596	0.896757939231702
Merged-chr13-62653255-4	chr13	62653206	62653406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29124.0	NM_173381	211378.0	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding	6.40203056954768	6.54986929809794	6.81995142241072	6.97842534281097	6.60888077216557	6.72397269588464	6.95047446823682	6.91969350187369	0.116273066395377	0.6161907487878	0.834845587136962
Merged-chr4-43509386-4	chr4	43509361	43509561	+	844.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013377)	promoter-TSS (NM_001013377)	-714.0	NM_001013377	230098.0	Mm.331567	NM_001013377	ENSMUSG00000051517	Arhgef39	E130306D19Rik	Rho guanine nucleotide exchange factor (GEF) 39	protein-coding	3.68143043118034	3.77101659490819	3.88418543623012	3.93535335353615	3.76127473421888	3.68372242863157	3.55487957929076	3.92766147677132	-0.262620998522351	0.571861023114381	0.810878835098182
Merged-chr11-95337445-3	chr11	95337340	95337540	+	915.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172543, intron 1 of 7)	CpG	422.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	4.01739295425522	3.8937940459361	3.97162058969683	3.91017899175834	3.69637923798084	3.88782190022466	3.57773022453371	4.26231984312247	-0.188328233510646	0.688526227870643	0.872815821435521
Merged-chr4-58304747-1	chr4	58304647	58304847	+	794.0	f0_balb.idr	intron (NM_001037130, intron 5 of 12)	intron (NM_001037130, intron 5 of 12)	18785.0	NM_010944	18198.0	Mm.16148	NM_010944	ENSMUSG00000057280	Musk	Mdk4|Mlk|Nsk1|Nsk2|Nsk3	muscle, skeletal, receptor tyrosine kinase	protein-coding	3.41222893276847	3.21668212896559	3.00338514913464	3.39857600925359	2.45145588504375	2.60581449792349	2.65524016547719	2.73625503550593	-4.08020079073216	2.37356253251218e-05	0.000593007397338309
Merged-chr16-32165485-4	chr16	32165397	32165597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347182)	promoter-TSS (NM_001347182)	97.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	6.66389175796603	7.06077517189741	6.38516117533485	6.45234352424815	7.21838095755858	7.05735054645074	7.0406472444967	6.61234569780548	0.47746942751559	0.054002456618573	0.242646106225154
Merged-chr15-97784874-4	chr15	97784766	97784966	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026353, intron 1 of 2)	CpG	501.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	5.48497189207371	5.42591894526676	5.16777395124979	4.86091740152868	5.55004382802441	5.43670780645252	4.9302090095995	5.02567314850582	0.0450978095847157	0.896745211783886	0.96131551296071
Merged-chr10-42637404-4	chr10	42637304	42637504	+	761.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41512.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	4.08091199202507	3.95586702912703	3.71918955795418	4.05627581277583	4.25748210109684	3.95397240162	3.76325710265847	4.20738872076239	0.270201805002019	0.547159857832741	0.796732576490316
Merged-chr13-30003334-4	chr13	30003248	30003448	+	825.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17285.0	NM_010093	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	4.27169457577516	4.42767051542088	4.31781563579346	4.65954005255329	4.28350614486611	4.1972731605426	4.42492503634334	4.40141722802986	-0.276922492588043	0.477645568069505	0.753826608935929
Merged-chr1-180293270-4	chr1	180293169	180293369	+	966.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36969.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	4.90743526473214	4.7584372051025	4.56174851292356	4.7977212283948	5.50141738757804	5.55218076302062	5.09353291091026	5.37735487724264	1.1880400315836	0.000173670853155362	0.00323520483034428
Merged-chr10-81343254-6	chr10	81343106	81343306	+	833.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148951)	promoter-TSS (NM_148951)	60.0	NM_148951	209047.0	Mm.218755	NM_148951	ENSMUSG00000034872	Gipc3	Ahl5|Rgs19ip3	GIPC PDZ domain containing family, member 3	protein-coding	3.20169910054277	3.13424005717461	3.1449968206312	2.85796355480672	3.26456397793265	3.13222483264234	3.13319190885903	3.08368415450124	0.315156684641512	0.581124853117448	0.816115543898387
Merged-chr4-150570487-3	chr4	150570387	150570587	+	931.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	81687.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	3.666935375847	3.79249770683677	3.45619352399823	3.81103164340277	3.65651141807406	3.24322223243907	3.38554137035369	3.27020168258923	-0.934187179634373	0.08467171584676	0.316619283543816
Merged-chr6-125313142-2	chr6	125313042	125313242	+	750.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010736, intron 2 of 9)	intron (NM_010736, intron 2 of 9)	743.0	NM_010736	17000.0	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	2.88546469532718	2.84183166476832	3.26374603516683	2.64047116984077	2.79674311934813	3.05853602335379	2.67527496539353	2.75272711495549	-0.421327873616424	0.529060284361972	0.785408513162467
Merged-chr3-16180655-4	chr3	16180580	16180780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD3|LINE|L1	-2485.0	NM_001358043	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	6.49975338146859	6.52064032439464	6.28749501891966	6.53323700228228	6.44941764392928	6.36372612681867	6.66282666918529	6.28303604399432	-0.0311845466720904	0.887598042721203	0.957799052224803
Merged-chr5-120579479-3	chr5	120579364	120579564	+	823.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145853, intron 2 of 27)	intron (NM_145853, intron 2 of 27)	9149.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	3.62194155532467	3.48060022965122	3.67042733074107	3.55461489006987	3.58960525947607	3.19506290686267	3.14746737851231	3.51873817757263	-0.658620629475343	0.224698441038137	0.533204797899567
Merged-chr4-105275353-4	chr4	105275254	105275454	+	875.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	118007.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.82656558559742	4.47809537145863	4.11696476759114	4.85941040638312	4.5330234898955	4.60771811935221	5.12911133904219	4.60081187072612	0.264987060311921	0.523368285696282	0.782464816143387
Merged-chr8-119686339-3	chr8	119686217	119686417	+	855.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023395, exon 6 of 7)	exon (NM_023395, exon 6 of 7)	-13692.0	NM_026922	69047.0	Mm.46251	NM_026922	ENSMUSG00000034112	Atp2c2	1810010G06Rik|Spca2|mKIAA0703	ATPase, Ca++ transporting, type 2C, member 2	protein-coding	2.80195512730402	2.65141137558988	2.80232963525522	2.64569915877295	2.664746601519	2.78514723779628	2.60572407720006	2.54331379056547	-0.350325227934812	0.59151468252817	0.821651601325705
Merged-chr11-82023907-4	chr11	82023824	82024024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11653.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	6.47295982092993	6.76185237845401	6.16665707466663	6.34924107439744	6.41474139507125	6.46842366301425	6.78075555921412	6.74395537869111	0.22255649946597	0.351839594634528	0.659093889162068
Merged-chr2-129675128-4	chr2	129675053	129675253	+	866.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23505.0	NM_001286502	18610.0	Mm.6239	NM_018863	ENSMUSG00000027400	Pdyn	Dyn	prodynorphin	protein-coding	3.75819715499544	4.39105850312282	3.98734069460489	4.03565070997573	4.37020110928819	4.35340943528244	4.16380961214213	4.17971976339849	0.517181684358704	0.226225227867924	0.534747808260772
Merged-chr15-80035662-3	chr15	80035540	80035740	+	963.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20832.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	4.56995170813014	4.6225225366012	4.93599794683513	4.88861459328427	4.08728032312092	4.18417010633988	3.98332451188087	4.31271541074788	-1.4837488471655	0.000179922109719624	0.00333354752672084
Merged-chr5-140597342-4	chr5	140597214	140597414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10027.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	6.51579885462798	6.31654971338724	6.27036858368056	6.23894754074455	6.03588122159399	5.99430582658501	6.02161681447085	5.70316369420065	-0.591113308413339	0.0136374390844623	0.09819030971159
Merged-chr18-49643925-4	chr18	49643819	49644019	+	913.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111682.0	NM_001170960	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	4.57246551739225	4.61996953683466	4.57318505878417	5.03384892712288	4.80437072575083	4.2597572814439	4.77819887259039	4.65082784960055	-0.182693480230195	0.636540767620706	0.846283673250294
Merged-chr11-97412263-4	chr11	97412166	97412366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37894.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	4.86314530114848	4.93071020179002	4.71610288890627	5.35399225096567	4.80934460224513	4.32361641969859	4.69403006593744	4.50088469890821	-0.832017872350495	0.0296827332903265	0.166073516182373
Merged-chr11-21236577-4	chr11	21236472	21236672	+	913.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12D|LTR|ERVK	-2460.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	4.3915407700346	4.36436784320019	4.51977269071491	4.55283935762664	4.78344403108207	4.16048834564345	4.61374039238921	4.59520875619128	0.233350675947407	0.541852530253641	0.793491190310592
Merged-chr15-30608248-4	chr15	30608130	30608330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-430896.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	6.67987399942716	6.47138852096167	7.16995518086544	7.15597782236231	7.29477274504699	7.49505683503689	7.45796389282365	7.36221043440554	0.664580490188092	0.00370909155674508	0.0377479879779179
Merged-chr5-24416264-4	chr5	24416151	24416351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001310474, exon 4 of 10)	exon (NM_001310474, exon 4 of 10)	2800.0	NM_001310474	171209.0	Mm.299636	NM_183000	ENSMUSG00000038276	Asic3	AW742291|Accn3|DRASIC|SLNAC1|TNAC1	acid-sensing (proton-gated) ion channel 3	protein-coding	5.7738533727826	5.90798071365894	5.69948885486087	5.34146635809645	5.45189122036662	6.30595202770456	5.74538415124478	5.99358702553507	0.35267569986886	0.255380782842083	0.566907550868438
Merged-chr13-34254911-4	chr13	34254818	34255018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	90264.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	7.73963042245559	7.87330424529271	7.83934216903597	7.79565949326207	7.64364837347072	7.52378300288423	7.66332482763602	7.30802717628146	-0.349777284921925	0.0444163890831377	0.214893567057413
Merged-chr10-122008901-4	chr10	122008777	122008977	+	900.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	38438.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	4.52651106107677	5.02404919278555	4.60453476803594	4.42767320564726	4.02342160758733	4.48772377405572	4.38175026896776	4.04954428420584	-0.978630563988341	0.0194915836863555	0.125770553047635
Merged-chr7-139974529-3	chr7	139974440	139974640	+	974.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347613, intron 5 of 5)	intron (NM_001347613, intron 5 of 5)	4215.0	NM_001347614	381933.0	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	4.72483593249621	4.44747400760553	4.75867756456071	4.81721551537995	3.87688987104872	3.97356653304437	4.36131279047883	4.2876087110292	-1.35574881973458	0.000996378642240607	0.0134016285807779
Merged-chr7-100159705-4	chr7	100159623	100159823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026010, exon 1 of 2)	exon (NM_026010, exon 1 of 2)	446.0	NM_026010	67164.0	Mm.46777	NM_026010	ENSMUSG00000030725	Lipt2	2610209A20Rik	lipoyl(octanoyl) transferase 2 (putative)	protein-coding	7.40893088809602	7.38000406046976	7.17379683451383	7.18206747119024	7.0657131171844	7.15576006073097	7.26626029631798	6.8915633992232	-0.252705885533161	0.19000455364117	0.489103163231511
Merged-chr5-115326544-4	chr5	115326484	115326684	+	786.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025573)	promoter-TSS (NM_025573)	-593.0	NM_025573	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	4.12571423078603	3.99359607455031	3.93721208664916	3.73065881622462	3.86939664777172	4.11079607713993	3.97015402885102	4.24894900371596	0.300139518044485	0.493097928933703	0.764001251274968
Merged-chr1-67386154-4	chr1	67386053	67386253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	263126.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	5.87650188383254	5.78691661072422	6.05394064978204	6.13542627642751	6.12258644795412	5.9558741886431	6.08290676294669	5.77509517011257	0.0253448785974059	0.919818986339772	0.970406583631903
Merged-chr18-36512424-4	chr18	36512308	36512508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010415, intron 3 of 5)	intron (NM_010415, intron 3 of 5)	3397.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	7.04040864761715	7.13370484279819	6.94068499847553	6.84557540786462	7.26725579430594	7.21814440363065	6.90556878718056	6.75233553437187	0.0976901187889539	0.646522847475966	0.851366985708531
Merged-chr7-126503536-4	chr7	126503422	126503622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183020)	promoter-TSS (NM_183020)	-85.0	NM_183020	233871.0	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	8.61754347088403	8.90262522764019	8.42293701803691	8.32155683571874	8.53527360405188	9.0455440722988	8.64144566053448	8.57181178437751	0.163718708436546	0.409328141306579	0.70496667642723
Merged-chr7-27408909-4	chr7	27408794	27408994	+	930.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_032610, exon 14 of 36)	exon (NM_032610, exon 14 of 36)	-12341.0	NM_001199236	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	4.53815421831112	3.94278584768982	4.57560660279026	4.70431116958617	4.05776470034953	4.32651003602067	4.27386303929865	4.24431799189545	-0.610211525944676	0.153399699864856	0.438032544497155
Merged-chr12-52637943-4	chr12	52637834	52638034	+	987.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-35612.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	5.27715820392957	5.38556036170618	5.03905515113871	5.5561267559368	5.34085594051514	5.8003635448271	4.89850975922911	5.36451758354878	0.0805802993519947	0.810947502275147	0.926854276252049
Merged-chr11-107432320-4	chr11	107432232	107432432	+	860.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	38388.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	4.19089149475484	3.72224114507713	4.10682140077901	4.08147684018258	4.2970112878342	4.04047257169661	3.56011234185797	3.75416129615109	-0.220355718707793	0.655750704594224	0.85629437016692
Merged-chr7-19002973-4	chr7	19002857	19003057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1108.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	5.81453192369651	5.66440652640636	5.34847705264625	5.56589159819668	5.95319296269367	6.01171043096542	5.56149461753902	5.71602760322601	0.363540994214556	0.184338265185346	0.481705340135624
Merged-chr5-101949448-4	chr5	101949347	101949547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 9 of 66)	intron (NM_172882, intron 9 of 66)	120474.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.77199457239671	5.81584483804056	5.9023292548473	6.48209633852913	6.51472836402146	5.68636728846344	6.55467482591269	6.62586397493932	0.533991049561741	0.0910764335757634	0.329796834093926
Merged-chr10-80223331-4	chr10	80223231	80223431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	RLTR13C2|LTR|ERVK	-3267.0	NM_023431	68114.0	Mm.273418	NM_023431	ENSMUSG00000020156	Mum1	2610019J09|9430059D04Rik|UBE-1C2	melanoma associated antigen (mutated) 1	protein-coding	5.5001967556695	5.77174399144233	5.38303706909254	5.34485469390746	5.64920217091433	5.95088788719535	5.35634504361423	5.55242745935564	0.234298641671517	0.422296973974543	0.714626353223175
Merged-chr16-4475257-4	chr16	4475148	4475348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	47827.0	NM_001347162	106393.0	Mm.35811	NM_175347	ENSMUSG00000022519	Srl	9830004M20Rik|AW108387|sar	sarcalumenin	protein-coding	7.77669829626635	7.73946829347634	7.50087660750233	7.56864232803509	7.81755566858222	7.88350083500023	7.6684729084698	8.13416401166156	0.309160888417836	0.0913941226612906	0.330417286881476
Merged-chr2-166900982-4	chr2	166900886	166901086	+	982.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5110.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	4.98284898656966	5.21974377426016	4.90637400730952	5.388097483089	5.60552640549846	4.91925749063317	5.3426823104771	5.36585061873292	0.33849969393162	0.310647044446248	0.622727754857458
Merged-chr3-58502104-4	chr3	58502015	58502215	+	745.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23706.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	4.40598885698403	4.49193494658491	4.40667955106159	4.68794288231887	4.18941915366312	4.0856327561171	4.38670158495631	4.36139967273465	-0.610549152883025	0.115826681023161	0.376560001979254
Merged-chr14-25789402-4	chr14	25789311	25789511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20555.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	6.06462381210896	5.94226505672253	5.84098004761102	6.23008119440297	5.81965259936273	6.17739629596541	6.1702737043167	5.78673624207493	-0.0742353371052232	0.774201305451009	0.911761659839467
Merged-chr7-116608594-4	chr7	116608506	116608706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	104237.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	6.26843474906346	6.57200474308563	5.89800862154203	6.25563960474285	6.33698879422494	6.6207229056371	6.11896519477223	6.24598060155347	0.10107462822773	0.691830524722676	0.87467626526963
Merged-chr3-55293210-4	chr3	55293116	55293316	+	673.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	50852.0	NM_001357466	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	3.96897793602255	3.90400681751264	3.86338174552795	3.91036539644472	4.05288281861383	4.49085798458627	3.95294598196786	4.24136997999272	0.739417152871969	0.082330568502779	0.311497769386026
Merged-chr4-139199279-4	chr4	139199187	139199387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	5176.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	6.68158352849911	6.27805699718358	7.04109174055978	6.91617347386447	6.42006704755784	6.2918235940447	6.76144955092843	6.60164425782802	-0.33628060299816	0.182071061288079	0.478756909999394
Merged-chr12-95748961-4	chr12	95748862	95749062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	56736.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	6.22865333327178	5.57988839883924	5.67417047652195	6.0874384865282	6.38700902191329	5.85276750503929	6.08565888539213	5.94475602176337	0.26236995311642	0.357846163604602	0.66388125418229
Merged-chr3-86920704-7	chr3	86920610	86920810	+	906.380981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001195499, exon 1 of 18)	5' UTR (NM_001195499, exon 1 of 18)	174.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	5.04031228025969	5.14017064167088	5.29929007201116	5.54506693714468	4.33508638849927	4.36120102816882	4.42530646665408	4.67199737435791	-1.74166190496572	1.38421520403884e-06	4.69847658599336e-05
Merged-chr2-174343696-4	chr2	174343551	174343751	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077507, intron 5 of 10)	intron (NM_001077507, intron 5 of 10)	13562.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	5.02109245539719	4.56828563407032	4.5633048455527	4.9985561885456	4.97778248443819	4.91040841566742	4.99732579238782	5.01850158910857	0.313063716446773	0.360001374022136	0.665611988334495
Merged-chr18-36365215-4	chr18	36365123	36365323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081365, intron 1 of 2)	intron (NM_001081365, intron 1 of 2)	16599.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	5.96861345444596	5.82934747654487	6.56036924213434	6.49737187551403	5.75152775099165	5.81266508292414	6.25843531914764	6.07471067798248	-0.423184230164789	0.144502576366082	0.423657174526788
Merged-chr1-171006550-4	chr1	171006462	171006662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12364.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	6.04125752614654	5.93435053461535	5.72078795386798	5.85850471087647	5.8596092983117	5.81717430281998	5.97047113294043	5.9324323491085	0.00628831058217438	0.979464929324417	0.99269129061727
Merged-chr7-19308035-7	chr7	19307839	19308039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347586, intron 1 of 4)	intron (NM_001347586, intron 1 of 4)	2106.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	6.20847507333798	6.48682618141269	6.03657170945653	5.78443074040661	6.79837882659237	6.93266191607662	6.31113402249537	6.18474457971268	0.669765286015493	0.0181423002390438	0.119913714245974
Merged-chr4-34387108-4	chr4	34387024	34387224	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163491.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	3.80713190576939	3.47859549401199	3.50125806942679	3.63779541498995	3.7240495826489	3.36054924241203	3.43007393827052	3.84981369372656	-0.00175392276108775	0.99725397941188	0.998908860902246
Merged-chr6-120363284-4	chr6	120363167	120363367	+	834.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145997)	promoter-TSS (NM_145997)	-832.0	NM_145997	214899.0	Mm.404761	NM_145997	ENSMUSG00000030180	Kdm5a	AA409370|C76986|Jarid1a|RBP2|Rbbp2	lysine (K)-specific demethylase 5A	protein-coding	3.81890166376177	4.30940734457058	4.21503662188722	3.64828625682127	4.42995963749071	3.94180756035759	3.96543453625936	4.21232736574355	0.364518616575307	0.441646118889361	0.728581294354415
Merged-chr1-181257809-4	chr1	181257708	181257908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45830.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	5.70628074289326	6.0815591111782	5.89781089102348	5.9094426611282	5.8571416360638	5.77680378601353	5.65265942494145	5.47923931262912	-0.329944910294568	0.208049663857803	0.512183689818924
Merged-chr6-40471407-4	chr6	40471306	40471506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286664)	promoter-TSS (NM_001286664)	-9.0	NM_212468	381760.0	Mm.276356	NM_028358	ENSMUSG00000029911	Ssbp1	2810480P10Rik|G630031O20Rik|MtSSB|mtDBP	single-stranded DNA binding protein 1	protein-coding	7.68763434707803	7.91095909731395	7.58533996554841	7.65155743328983	7.83219443778591	7.78945193558036	7.80654745065385	7.53433469891767	0.0445481470596287	0.801643915766522	0.923498669304955
Merged-chr9-55244307-4	chr9	55244207	55244407	+	845.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	intron (NM_032002, intron 3 of 7)	35372.0	NM_028049	71999.0	Mm.276429	NM_028049	ENSMUSG00000032309	Fbxo22	0610033L19Rik|1600016C16Rik	F-box protein 22	protein-coding	4.38954256655654	3.97763663825323	4.18975871526339	4.22540865439743	4.15096917000097	3.96330616795775	3.93542081822173	3.94911419475167	-0.502479249383143	0.235585326637727	0.545557842336431
Merged-chr13-53377402-4	chr13	53377305	53377505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009269)	promoter-TSS (NM_009269)	-44.0	NM_009269	268656.0	Mm.240336	NM_009269	ENSMUSG00000021468	Sptlc1	AW552086|C77762|E030036H05|Lcb1|SPT1	serine palmitoyltransferase, long chain base subunit 1	protein-coding	6.22998408589874	5.97054268800437	5.93082401116503	5.75851151257597	7.12518574759214	6.81087741649019	6.740917397473	7.18813889013124	1.49084476228363	1.64903862490348e-10	1.21760290748968e-08
Merged-chr17-71179058-4	chr17	71178971	71179171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1b|LTR|Gypsy	-4461.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	6.57704026417758	6.37877470921297	6.86608614821223	6.80996572870404	6.39994302326731	6.10753259047847	6.38076396146675	6.02162296870933	-0.63391280053645	0.00847946528689104	0.0699779547426803
Merged-chr12-11217891-3	chr12	11217766	11217966	+	640.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8918.0	NM_019544	56184.0	Mm.117113	NM_019544	ENSMUSG00000047002	Msgn1	Msgn|pMsgn1	mesogenin 1	protein-coding	3.61775856171938	3.25042692848288	3.43358566019289	3.62235954709648	2.97367643189947	2.83284064338949	2.94893706472116	3.02577882664938	-2.29509851239423	0.000354337791198859	0.00580867541628453
Merged-chr13-44926477-4	chr13	44926352	44926552	+	749.858337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 8 of 9)	Lx7|LINE|L1	75644.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	3.9007956423072	3.94819473293026	3.85186925028286	3.81588733085012	3.94479933989453	3.91992768996069	3.67715621938703	3.89906333949248	-0.0242965730146605	0.955831531226275	0.984313078570438
Merged-chr11-76856752-3	chr11	76856653	76856853	+	849.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9745.0	NM_007754	12874.0	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	3.88320185726607	3.68135847818699	3.53077783715799	3.48821331569572	3.47236756568375	3.70504445394747	3.7282837530092	3.63987448955234	-0.0346935534204018	0.943222512238038	0.979482306235284
Merged-chr4-44300943-4	chr4	44300844	44301044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010790)	promoter-TSS (NM_010790)	27.0	NM_010790	17279.0	Mm.268668	NM_010790	ENSMUSG00000035683	Melk	AI327312|MPK38|mKIAA0175	maternal embryonic leucine zipper kinase	protein-coding	6.14249611286545	6.09988597568759	6.23665509978695	5.71307906459708	6.06763407474518	6.03966742400781	5.85724689799329	5.83476509750238	-0.136576495886315	0.601386529363126	0.82708957558551
Merged-chr9-32695330-2	chr9	32695230	32695430	+	876.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011808)	promoter-TSS (NM_011808)	-712.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	3.26330105721805	3.54106890926195	3.26372609349443	3.03127061517704	3.16224399071735	3.43566828829542	3.13007939432999	3.37429585333238	-0.00995560146795057	0.985917001596423	0.994788540667462
Merged-chr6-124730361-3	chr6	124730263	124730463	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 3 of 15)	intron (NM_001077705, intron 3 of 15)	2791.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	6.42576493786207	6.29959424852083	6.46293938508825	6.36945091765991	6.7694938652549	7.09522456587014	7.10899145323396	6.63988966207102	0.754730975726574	0.000553927319735863	0.00838001970063315
Merged-chr3-40799964-4	chr3	40799850	40800050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173169)	promoter-TSS (NM_173169)	-1.0	NM_173169	20873.0	Mm.3794	NM_011495	ENSMUSG00000025758	Plk4	1700028H20|AI385771|Sak|Stk18	polo like kinase 4	protein-coding	7.70782835529602	7.92033510174098	7.73398452629978	7.9768414136201	8.00882566994506	8.16994234218109	7.78326166252632	7.71221658266704	0.110094372001803	0.549636164807467	0.798076705263997
Merged-chr1-55808886-4	chr1	55808773	55808973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122368.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	5.54446913377445	5.06004842816494	5.04099348286823	5.47937961053455	5.11290475063942	5.28762406173538	5.36244033921542	5.17543978267027	-0.143769492712424	0.645952370498293	0.851117968562188
Merged-chr16-35922552-4	chr16	35922474	35922674	+	964.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-15896.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	4.77510006418397	4.46531851311195	4.74146133695913	4.47812696208588	4.53034781657381	4.25268606170401	4.57197489973134	4.62901404112798	-0.232280235530498	0.530818807506479	0.786869282179433
Merged-chr17-53584105-4	chr17	53584010	53584210	+	969.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190846)	promoter-TSS (NM_001190846)	-16.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	5.30416369983044	5.00646777741833	5.21511268756307	5.43305168347174	5.3122164720244	4.9119571491146	5.30707120683469	5.11478441997213	-0.147170144298631	0.638488579669555	0.847180140037268
Merged-chr6-54088350-4	chr6	54088251	54088451	+	758.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	48419.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	3.65486875715482	3.95285311374013	3.59634383265718	3.64829881660683	4.25764603291143	3.98940110809377	3.7508108933342	3.70981110228442	0.671081465093193	0.159022369662524	0.446219364628123
Merged-chr19-29325341-4	chr19	29325234	29325434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013754)	promoter-TSS (NM_013754)	-16.0	NM_013754	27356.0	Mm.306511	NM_013754	ENSMUSG00000050957	Insl6	RIF1	insulin-like 6	protein-coding	5.75111020813116	5.52701453433221	5.67717796036946	6.11181386914761	5.74345369687362	5.59965520269198	5.72295540616471	5.64719758937995	-0.205340170186084	0.462980973100972	0.744465790547013
Merged-chr12-79060960-4	chr12	79060864	79061064	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181073, intron 7 of 28)	intron (NM_181073, intron 7 of 28)	28706.0	NM_029988	110417.0	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	4.37604599806752	4.66310492630303	4.94741210754605	4.77874135788827	4.48725241965989	4.14268786658989	4.05819855956492	4.32819575314191	-0.994727016691188	0.0142572159975955	0.101182769126011
Merged-chr2-6363391-4	chr2	6363285	6363485	+	988.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181399, intron 1 of 13)	intron (NM_181399, intron 1 of 13)	10649.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	5.3595834421051	5.21391404021838	5.33188588061219	5.711947447736	5.23708146291579	5.10524466717358	5.01613688476657	5.0727131156735	-0.587663224430348	0.0587527095466038	0.255164225980382
Merged-chr11-84798108-2	chr11	84798008	84798208	+	987.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21407.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	3.37728206511312	3.03488176485784	2.98329526377808	3.08622557776693	3.61179031485395	3.75572976970495	3.41933545428806	3.53624874577923	1.62051924581282	0.00266159488720125	0.0291102738899966
Merged-chr7-81855140-4	chr7	81855050	81855250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3851.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	8.12567953004885	7.87773457339278	8.29932845386132	8.1525424315799	7.84230093700202	8.11185730324692	8.12473337705875	7.80836135417652	-0.186694436292752	0.298126990984138	0.610289640541255
Merged-chr2-84895692-4	chr2	84895592	84895792	+	876.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9000.0	NM_199223	269295.0	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	4.28310470274425	3.93482496077133	4.08942911026151	4.32128907318683	4.53653917120764	4.54201658359954	4.30864603641767	4.52627281359875	0.722355681765094	0.0677452737233387	0.277812516507301
Merged-chr10-120978682-7	chr10	120978584	120978784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081193, exon 1 of 13)	exon (NM_001081193, exon 1 of 13)	646.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	4.73866686431722	5.02634562164169	4.69966437944586	4.44767042397318	5.06735064474041	4.95176923432857	4.7554329740193	4.84859090358093	0.378759117419497	0.281827999532772	0.593954970650299
Merged-chr2-71212197-2	chr2	71212097	71212297	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347173, intron 1 of 17)	CpG	251.0	NM_010064	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	3.7537914809601	3.51484637807539	3.85719503863675	3.67712884855604	3.63506499038748	3.81987459108904	3.9347587836046	4.23533589505884	0.626164607359269	0.186923909293713	0.485120635668048
Merged-chr1-170868682-4	chr1	170868560	170868760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081304)	promoter-TSS (NM_001081304)	-889.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	5.69868704226448	5.71079515901921	5.40430758714493	5.09473711398223	5.56911905206613	5.72163013147188	5.57174323148246	5.56996291789675	0.21312543462861	0.474881319070426	0.75193151536302
Merged-chr14-70074949-4	chr14	70074836	70075036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2509.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	7.82853008707757	8.28598472977356	7.70897308045417	7.99927013645882	8.70027125175273	8.94740016124271	8.69751687619117	8.72782556597707	1.00116337509966	4.04139589987617e-08	1.89876250004809e-06
Merged-chr16-33875962-4	chr16	33875871	33876071	+	862.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010580, exon 4 of 15)	exon (NM_010580, exon 4 of 15)	46306.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	4.16216885014176	3.99222629492114	3.87264517289983	4.20189993625686	3.93305267336689	3.99275388413952	4.05556232462684	4.24336830523455	-0.0426929290344591	0.920124927654879	0.970409558278764
Merged-chr4-133632216-3	chr4	133632120	133632320	+	911.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 1 of 7)	intron (NM_001017968, intron 1 of 7)	1209.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	3.47863693099354	3.92047621166978	3.83419122557142	3.97875706622203	3.17277540983186	3.40580043889674	3.40710360681345	3.35529959193795	-1.69006737755243	0.00168578063763341	0.0204485650998821
Merged-chr17-5250083-4	chr17	5249985	5250185	+	849.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 5 of 19)	intron (NM_001085355, intron 5 of 19)	168682.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	4.16057734066617	4.04375945375705	4.51260729931759	5.00563833533009	4.22352827959948	4.33827879353298	4.37172863132666	4.15873510597277	-0.545459801126314	0.2330480525768	0.542611378295208
Merged-chr17-50508892-4	chr17	50508777	50508977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013880)	promoter-TSS (NM_013880)	-670.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	5.9475828401221	5.8949124006488	5.70615767274655	5.92428055970743	5.73229297083209	5.90944861307344	6.02338541181388	6.2378048175824	0.166640709550374	0.515193419800976	0.777421081789563
Merged-chr11-86995869-4	chr11	86995774	86995974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-2112.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	7.05727632789385	7.2455581626441	6.73430229504738	6.91088337586367	7.06230569897164	7.16160636871997	6.58784395057035	7.14526057489398	0.0132532913141246	0.953179762104936	0.983323655910652
Merged-chr13-58572881-4	chr13	58572782	58572982	+	858.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022317, intron 8 of 17)	intron (NM_022317, intron 8 of 17)	37995.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	4.10832733413456	3.98166166673561	4.42707995758222	4.35470260564083	3.92220093575882	3.67181576606167	3.948885595658	3.9114836309614	-0.978221835604706	0.0283193893097179	0.161276617186085
Merged-chr11-116694742-3	chr11	116694579	116694779	+	965.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009180)	promoter-TSS (NM_009180)	-19.0	NM_009180	20446.0	Mm.3947	NM_009180	ENSMUSG00000057286	St6galnac2	II|ST6GalNAc|Siat7|Siat7b	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding	3.84734650428208	4.09808202512503	3.6925551695507	3.91254186219457	3.63023734544141	3.75402948577856	3.878885674231	3.51459010255174	-0.593897925434939	0.208333296209849	0.512599339465596
Merged-chr3-51184970-4	chr3	51184883	51185083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2C1|LTR|ERVL	-39464.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	6.77067486739647	6.31612925779595	6.87205978762936	6.99633196366832	7.22745597054149	7.16692753821123	7.3921924515805	6.95992668135186	0.587139828992155	0.0106331511734416	0.0825272126675825
Merged-chr12-4545637-4	chr12	4545547	4545747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	21534.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	7.0431393056147	6.79072316396984	6.78788148156176	7.00263806368929	6.81165558031031	6.67944067661797	6.82231445321791	6.63212527097984	-0.244184224055177	0.225141724098801	0.533502988868384
Merged-chr17-22867220-4	chr17	22867143	22867343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110254)	promoter-TSS (NM_001110254)	-109.0	NM_001110254	240041.0	Mm.328828	NM_177358	ENSMUSG00000059142	Zfp945	A630033E08Rik|C730040L01Rik	zinc finger protein 945	protein-coding	5.58570500828721	5.39303601673206	5.48303758989281	5.51268209487961	5.17116734664656	5.17567764204987	5.37236571066084	5.50588648664876	-0.331124261493932	0.242563927202443	0.553291388378231
Merged-chr6-72394564-4	chr6	72394440	72394640	+	970.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3873.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	4.31512025694096	4.42748419586793	5.00954168838424	4.08088253038753	4.68081495195584	4.44826954415063	4.7586342602974	5.24776363879131	0.679155287154587	0.11743717737139	0.37901420570491
Merged-chr19-11965554-4	chr19	11965445	11965645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033174)	promoter-TSS (NM_001033174)	-299.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	9.33521221809737	9.48505909928083	9.44961446161705	9.22284404366903	9.25638012635087	9.561976883819	9.15021728035715	9.08933327978509	-0.121159227266637	0.459506499157983	0.742013500840902
Merged-chr18-34372401-2	chr18	34372301	34372501	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007874, intron 2 of 4)	intron (NM_007874, intron 2 of 4)	1014.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	2.77390984313878	2.80773619168159	3.07612785861819	2.76419492928307	2.81530294275582	2.94832527137262	3.00901967484234	2.90206712685897	0.277145180795739	0.648180796926562	0.852019592695027
Merged-chr13-14064849-4	chr13	14064726	14064926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_198122, exon 2 of 23)	5' UTR (NM_198122, exon 2 of 23)	1042.0	NM_198122	94246.0	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	4.75875893454072	4.89325941476637	4.71991095866925	4.89187338077283	4.67715293358544	5.07856919876749	4.77534349619946	5.03517962570178	0.135227926338395	0.686409476722586	0.871787672169905
Merged-chr7-145106648-3	chr7	145106547	145106747	+	884.922241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101472.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	4.59372140732881	4.47275673814214	4.29288195327504	3.87047903130428	4.00540612004277	4.23650964598941	3.99143527478926	4.05754812651016	-0.633879347912751	0.157830300696701	0.444601985645499
Merged-chr19-5843134-4	chr19	5843037	5843237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003513, exon 1 of 1)	non-coding (NR_003513, exon 1 of 1)	2341.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	5.97682773659015	6.00141442951651	5.79128588977505	6.12219020054321	5.99984833311293	5.78086352365287	6.2850898225466	5.5687411775842	-0.0738939436997139	0.786018496050203	0.916755352451623
Merged-chr10-62865393-4	chr10	62865287	62865487	+	680.354187	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253857, intron 2 of 12)	intron (NM_001253857, intron 2 of 12)	21937.0	NM_001253857	52463.0	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	3.11695588674002	3.47903348116937	3.29700980802213	3.24365082252081	2.99712404214189	3.46616378048252	3.16868665166497	3.17840832774106	-0.312355889893337	0.581585119446534	0.816389201039005
Merged-chr4-108301190-4	chr4	108301099	108301299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033634)	promoter-TSS (NM_001033634)	-109.0	NM_001033634	414872.0	Mm.426241	NM_001033634	ENSMUSG00000034636	Zyg11b	1110046I03Rik|2810482G21Rik|D4Mgi23|Gm431|mKIAA1730	zyg-ll family member B, cell cycle regulator	protein-coding	7.76960933710258	7.83203189166517	7.36368984684653	7.67343178739103	7.73969629595297	7.80084322517619	7.77852384469499	7.64407219247108	0.0884071377958459	0.623071536461684	0.838884054759699
Merged-chr7-132653241-4	chr7	132653117	132653317	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	42574.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	5.37551927942617	5.4770416127197	5.25475718854029	5.87871116849056	5.02781039159794	5.02877503946927	5.60870536440442	5.15173076530993	-0.557746638491157	0.0937036563434277	0.334855339316405
Merged-chr13-3573956-4	chr13	3573857	3574057	+	939.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134063, exon 14 of 20)	exon (NM_134063, exon 14 of 20)	35882.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	4.6437505162022	4.22605233399505	4.27145440838482	4.79991065067488	4.4953764574029	4.39924263795954	4.54911834690367	4.21998915295393	-0.227548156790892	0.573825567930551	0.811973307930812
Merged-chr5-135677418-4	chr5	135677288	135677488	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-11757.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	4.96222228025819	4.80335539071678	4.81543492009424	4.75486136652002	4.7455516620486	5.20352155603751	5.21684720150678	5.18255119997763	0.514267341584116	0.118171089033477	0.380240493029873
Merged-chr5-93093278-4	chr5	93093164	93093364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347377)	promoter-TSS (NM_001347377)	-152.0	NM_001009818	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	7.29442937637914	7.31051873197641	7.65157154211687	7.20616934656188	6.8263270923303	7.19791495960907	6.94602772181993	7.18318721819351	-0.448830061240523	0.0302245151237995	0.168100543991008
Merged-chr9-25561355-4	chr9	25561254	25561454	+	862.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	79757.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	3.89057140962284	4.17435419349355	4.14717939696672	4.37548455795671	4.23755080626276	4.01263270859363	4.26013325968477	4.27679109932616	0.071177343139331	0.865294323284094	0.949566535676337
Merged-chr8-61917686-3	chr8	61917598	61917798	+	907.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-10389.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	3.39158333113674	3.27755116929231	3.44805224872034	3.74075562725278	3.46520798869847	3.31825990317801	3.48778121852158	3.44620212840897	-0.199724107585965	0.706064377726477	0.881879743016467
Merged-chr15-51696909-4	chr15	51696802	51697002	+	970.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	168559.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	4.69825985376042	4.62598181270756	4.30088167586283	4.52293728230401	4.77700539674318	4.90807873008875	4.81934559505306	4.73340227967746	0.562494317435649	0.102453270550049	0.351572369808042
Merged-chr8-77549449-4	chr8	77549370	77549570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081240)	promoter-TSS (NM_001081240)	73.0	NM_001081240	102182.0	Mm.197630	NM_178903	ENSMUSG00000037134	Prmt9	AI931714|Prmt10	protein arginine methyltransferase 9	protein-coding	7.28867945501354	7.62044707397519	7.59663498497542	7.19619538070139	7.15574450407402	7.33401890497485	7.08524188173243	7.09169339257744	-0.354665602074428	0.0764627890633947	0.298729066509873
Merged-chr13-96542581-4	chr13	96542467	96542667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164222)	promoter-TSS (NM_001164222)	12.0	NM_012048	27015.0	Mm.89926	NM_012048	ENSMUSG00000021668	Polk	DINP|Dinb1	polymerase (DNA directed), kappa	protein-coding	8.65858238317038	8.72696290969743	8.76326130914824	8.87657638521214	8.76103765069948	8.70516572458988	8.94925410601311	8.68106754392232	0.0199358630229925	0.895050809353427	0.96073210268323
Merged-chr6-30402280-1	chr6	30402180	30402380	+	984.0	f0_c57.idr	intron (NM_001311087, intron 1 of 8)	CpG	425.0	NM_001311087	76788.0	Mm.277308	NM_029742	ENSMUSG00000029775	Klhdc10	2410127E18Rik|AI593221|mKIAA0265	kelch domain containing 10	protein-coding	4.50078744017226	4.27218297761321	4.46011041307212	4.18963473799868	4.56217014200683	4.35871762515212	4.73522185266284	4.65165336883367	0.545977743656108	0.14217933244857	0.419611190992486
Merged-chr5-25084017-3	chr5	25083915	25084115	+	974.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 1 of 15)	intron (NM_145401, intron 1 of 15)	16627.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	5.02428072689779	4.7332135773804	4.65619032746314	5.45139364302788	3.99740030270833	4.2695300165388	4.28187459839837	4.34789994519449	-1.80066144029402	1.52610864392024e-05	0.000401578141092786
Merged-chr18-49705603-4	chr18	49705542	49705742	+	889.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170960, intron 2 of 3)	Lx9|LINE|L1	49959.0	NM_001170960	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	4.15435105993633	3.7717950678727	3.80762164434482	4.3219998383473	4.20480726118992	3.98419570484125	4.00044499307379	4.10824129162695	0.0784336409901842	0.862774687644206	0.948336697064826
Merged-chr18-88845716-4	chr18	88845626	88845826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48481.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	5.45561284927704	5.1767066099985	5.56941090113894	5.52894693616265	5.56364420723652	5.87120882249685	5.8900656537676	5.69362213416429	0.521094693790506	0.0594930832610483	0.257113428866919
Merged-chr1-167337322-4	chr1	167337211	167337411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12680.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	5.94958664849183	6.39959833078694	6.52012119645367	6.49781999613867	6.2077907772235	6.22016436530794	5.96716192412118	6.08260744332897	-0.370897897567138	0.132181708073945	0.404721546823047
Merged-chr8-83593667-2	chr8	83593566	83593766	+	624.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_134118, intron 1 of 12)	intron (NM_134118, intron 1 of 12)	825.0	NM_027179	106529.0	Mm.352239	NM_027179	ENSMUSG00000031708	Tecr	2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|SC2	trans-2,3-enoyl-CoA reductase	protein-coding	3.13824711667743	3.08729152000093	3.00831743727824	2.8166229721907	3.54308933131276	3.42812006142413	3.29912259332469	3.1976205428413	1.44026926614544	0.0100673421707836	0.0793031594039622
Merged-chr14-55681534-2	chr14	55681433	55681633	+	1000.0	f0_balb.idr|f0_c57.idr	exon (NM_145705, exon 1 of 9)	exon (NM_145705, exon 1 of 9)	284.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	6.35641693233335	6.25617369695465	5.54579627268885	6.18548871384089	6.52192731702295	6.23810068814249	6.44219229190269	6.69105521875096	0.536611797487233	0.043490103698809	0.212185331144554
Merged-chr2-27428248-4	chr2	27428131	27428331	+	918.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009500)	promoter-TSS (NM_009500)	-623.0	NM_009500	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	4.69124558383712	4.57069812966404	4.08925945340927	4.02948235733068	4.43255352725555	4.32259193960896	4.40525732710436	4.72261815100468	0.259727215383378	0.537231908856944	0.790977285921248
Merged-chr4-130805937-4	chr4	130805864	130806064	+	879.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	Tigger7|DNA|TcMar-Tigger	13427.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	4.19934737419748	3.61432431068246	4.62987575808283	4.23278926289005	3.89428621742311	3.86530192412318	3.99904081450237	3.91146474080899	-0.78088785522923	0.108548804369417	0.363646413432991
Merged-chr11-19968009-4	chr11	19967905	19968105	+	877.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	43563.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	4.58615847941988	5.08363972453152	4.37005324328229	3.89085817632202	4.89028102707808	4.35095312007522	4.71427357467219	4.45830359864157	0.149802794185056	0.746195514019994	0.899968661443807
Merged-chr4-132946698-6	chr4	132946652	132946852	+	918.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24201.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	4.31463220011251	4.00819552980177	4.51911449938087	3.89361419495143	4.28613149364701	4.68898661467497	4.10786675526724	4.5531202243579	0.552769397929549	0.202722579375501	0.505275565576953
Merged-chr11-59544181-4	chr11	59544093	59544293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 2 of 9)	intron (NR_153314, intron 2 of 9)	1507.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	7.22203253877849	7.59667820785583	7.08655877468296	6.46287157391573	7.57715036959081	7.67081538054751	6.82829406710652	6.58729346585701	0.124673788236988	0.789536297585954	0.918515153062961
Merged-chr1-127261279-3	chr1	127261170	127261370	+	823.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 2 of 17)	RLTR28|LTR|ERVL	56284.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	3.54286623966036	3.46554610805721	3.48736006712863	3.72182238769528	3.80183877315444	3.54246735509355	3.41684147759667	3.64635943113527	0.152491339245022	0.760035361746662	0.905851390428209
Merged-chr19-28011625-4	chr19	28011538	28011738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011265)	promoter-TSS (NM_011265)	-472.0	NM_001166414	19726.0	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	7.11019732431251	7.1866474702332	7.22022166270914	7.03546026345197	7.06805081466163	6.57588078311415	6.96929869431244	6.59442833113531	-0.420061614262984	0.0494355020636584	0.230075166822881
Merged-chr1-93013627-3	chr1	93013525	93013725	+	952.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7291.0	NM_177587	208760.0	Mm.235537	NM_177587	ENSMUSG00000045091	Aqp12	AB084104|mAQP12	aquaporin 12	protein-coding	3.6343127407952	3.40403860239962	3.7363873087676	3.82025961824521	3.46756375677268	3.58068112827805	3.67139088487323	3.73416964413336	-0.167186542867922	0.734358053293344	0.895018524628728
Merged-chr2-128241094-1	chr2	128240994	128241194	+	643.0	f0_balb.idr	Intergenic	Intergenic	113519.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	3.93907878345366	4.26020456700387	3.98403077561091	3.35640994228124	3.33178773974044	3.81375290597968	3.50395528029503	3.5151868288574	-1.13567657651804	0.040916274265087	0.204535394754872
Merged-chr1-135267739-4	chr1	135267637	135267837	+	898.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 5 of 9)	intron (NM_001159624, intron 5 of 9)	-9265.0	NM_007921	13710.0	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	4.62636780443519	4.70382645753415	4.90073416929316	4.6535181331505	4.16945834726754	4.45666508253015	4.44409446094109	4.41734647045212	-0.803076389176628	0.029565544500243	0.165613118122515
Merged-chr8-4329177-3	chr8	4329075	4329275	+	835.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033527, intron 2 of 5)	intron (NR_033527, intron 2 of 5)	3965.0	NR_033527	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	3.26098235853136	3.36470701809931	3.6454384937244	3.34188301919347	3.39986871004053	3.37431456444847	3.71953840222305	3.381410365472	0.236472230034616	0.64959720659972	0.852797294781466
Merged-chr17-50345338-4	chr17	50345225	50345425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-51705.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	5.29650753110517	5.13468227680973	5.87659924253049	5.70575795370818	4.93153774089738	4.66683077141851	5.24014042885806	5.61624872612023	-0.677628142930519	0.0689871181413792	0.280708516674397
Merged-chr19-4136148-4	chr19	4136121	4136321	+	896.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144532, exon 5 of 6)	exon (NM_144532, exon 5 of 6)	3388.0	NM_144532	73660.0	Mm.379226	NM_144532	ENSMUSG00000024842	Cabp4	2410038D05Rik	calcium binding protein 4	protein-coding	4.19367035269637	4.22356660031449	3.89433723711957	3.27313665266176	3.5884971158979	3.74835014100896	3.67030047007521	3.68300717453938	-0.796391476766297	0.143488895873648	0.42182435855639
Merged-chr4-55591661-4	chr4	55591554	55591754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6BA|LTR|ERVK	-59179.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.44239503167689	4.98727930734434	4.78836001380041	4.8130125906347	5.11795370957987	4.57523121904678	5.03519073541987	4.92827419152277	0.324452009810599	0.361355925750575	0.66667409966046
Merged-chr9-42264343-4	chr9	42264224	42264424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172769)	promoter-TSS (NM_172769)	-24.0	NM_172769	235293.0	Mm.32700	NM_172769	ENSMUSG00000032018	Sc5d	A830037K02|A830073K23Rik|Sc5dl	sterol-C5-desaturase	protein-coding	7.88444978802277	8.11884963668779	7.7214963796746	7.93615978515054	8.16084958742558	7.88228489189067	8.03097633560696	7.69093298202516	0.0427468903755192	0.817791305717212	0.929998999051707
Merged-chr17-57347125-4	chr17	57347005	57347205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11581.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	7.72489271763905	7.96831375888345	7.90899283246741	7.751917413379	7.76822795614849	7.87027618461967	7.97907282252956	7.77700387798539	0.0121776428566273	0.942187295450931	0.979062797089676
Merged-chr5-72647775-4	chr5	72647688	72647888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081205)	promoter-TSS (NM_001081205)	-8.0	NM_001081205	70701.0	Mm.38884	NM_001081205	ENSMUSG00000067219	Nipal1	3830408G10Rik|Npal1	NIPA-like domain containing 1	protein-coding	6.22338017445982	5.91084138201194	6.31479839495145	6.48873366229163	5.84347622926911	5.72988290419064	6.24722487455725	6.14282463147644	-0.395203334614038	0.138688473643059	0.414255428679786
Merged-chr6-97526329-4	chr6	97526200	97526400	+	723.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-38480.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.62300706100485	3.48603628500205	3.20863411282878	3.65105185782624	3.77963119918604	3.68791112567991	3.39059794634242	3.51587978684109	0.303749039599126	0.560999291378714	0.804831573486766
Merged-chr7-132316430-5	chr7	132316450	132316650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028578, exon 1 of 1)	non-coding (NR_028578, exon 1 of 1)	476.0	NM_001360768	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	5.30730929449907	5.35349737960935	5.54003239727916	5.25216280628262	5.63393780575233	5.24480777266784	5.53808811932129	5.86044541308453	0.40628056414265	0.160221616235226	0.448239942214445
Merged-chr10-40317394-2	chr10	40317294	40317494	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	-15206.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	3.89413288040786	3.85832495750708	3.98665436298122	3.94249662713871	3.22105840906768	3.80855885701327	3.55870475007451	4.02761240638455	-0.704733987668522	0.177668823876404	0.473218425935435
Merged-chr13-58503792-4	chr13	58503692	58503892	+	968.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100449.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	6.24007916535883	5.9606907520667	6.07046960062377	6.3261176720745	5.79341636667776	5.26763724667199	5.95577136120161	6.08625998661583	-0.55270854456067	0.0498331777903169	0.231155149034667
Merged-chr11-116581556-4	chr11	116581460	116581660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173755)	promoter-TSS (NM_173755)	-113.0	NM_173755	217342.0	Mm.243950	NM_173755	ENSMUSG00000020802	Ube2o	9630022H21|B230113M03Rik|E2-230K|mKIAA1734	ubiquitin-conjugating enzyme E2O	protein-coding	6.36967358710886	6.29944683893965	5.70217493101658	5.85621274189497	6.30849983900828	6.40404385120818	6.17841644807755	5.8825472034069	0.198399371918266	0.471400801813377	0.749832180244525
Merged-chr12-91008960-3	chr12	91008862	91009062	+	996.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181815, intron 24 of 25)	intron (NM_181815, intron 24 of 25)	-36886.0	NR_045858	71349.0	Mm.442093	NR_045858	ENSMUSG00000085004	5430427M07Rik	-	RIKEN cDNA 5430427M07 gene	ncRNA	4.45416000392248	4.53909841052172	4.45489109783021	4.76130583204658	4.0959675473338	4.06484655808085	3.92501534681977	3.75517921131981	-1.50608029004461	0.00039964925681675	0.00643734656052488
Merged-chr3-86812901-3	chr3	86812807	86813007	+	917.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195500, intron 8 of 11)	intron (NM_001195500, intron 8 of 11)	107977.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	3.97658108398673	3.64755854915139	3.63993261026114	3.73679526966631	3.64116547820193	3.51341221690651	3.67911988530664	3.88728021202483	-0.205587191778773	0.665708606566874	0.861582866462235
Merged-chr9-96559241-5	chr9	96559158	96559358	+	912.0866699999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053268, intron 16 of 23)	MLTR11B|LTR|ERVK	72245.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	4.36423324094723	4.37346666797066	4.71504344049377	4.35034324375602	4.59078212371498	4.29889960010324	4.43127354080968	4.48980988485811	0.0315712595166311	0.933216499045975	0.975936701173319
Merged-chr2-75757510-4	chr2	75757432	75757632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52869.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	5.54599210985822	6.04370724769797	6.50927445334967	5.97282168175793	6.3943447885009	6.29364789957309	6.54975908927369	6.26968041573625	0.491158280418794	0.0725081970599837	0.289480232923888
Merged-chr11-101172103-4	chr11	101172009	101172209	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346769)	promoter-TSS (NM_001346769)	-737.0	NM_001346769	217198.0	Mm.273254	NM_146030	ENSMUSG00000035172	Plekhh3	BC020025	pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	protein-coding	4.99642490634897	4.67703872481833	4.65888357165067	4.7577388133609	5.01622849906009	5.16897554855184	5.15524932143416	4.73903938321637	0.505808727112404	0.126971049555354	0.396406523808084
Merged-chr19-3719204-4	chr19	3719111	3719311	+	875.354126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10800.0	NM_001358257	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	4.08722265405383	4.52581248085473	4.31973444861486	4.02406298449743	3.91595889127258	4.40481236071579	4.45756708143345	4.13514489460326	-0.023132054869362	0.957550877307176	0.984850737934993
Merged-chr4-70410478-4	chr4	70410370	70410570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145990)	promoter-TSS (NM_145990)	-35.0	NM_145990	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	8.7441797517086	8.83071601100421	8.90774953285378	8.92770028069224	8.89123486981653	9.03666352341431	8.74332906270146	8.4933127592459	-0.0612319132582643	0.715250902963836	0.886053187059468
Merged-chr14-30908140-4	chr14	30908046	30908246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008407)	TTS (NM_008407)	15441.0	NM_008407	16426.0	Mm.4517	NM_008407	ENSMUSG00000006522	Itih3	AW108094|ITI-HC3|Intin3|Itih-3	inter-alpha trypsin inhibitor, heavy chain 3	protein-coding	6.40892576398232	6.39901601947029	6.31535244385332	6.61035116348967	6.89395234911655	6.58722514665386	6.81697772162498	6.71158534634234	0.449014360208386	0.0366088396904404	0.190439275036604
Merged-chr7-29211468-4	chr7	29211375	29211575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164658, intron 1 of 27)	intron (NM_001164658, intron 1 of 27)	2558.0	NM_001164658	320225.0	Mm.349382	NM_001039721	ENSMUSG00000049676	Catsperg1	A230107C01Rik|Catsperg	cation channel sperm associated auxiliary subunit gamma 1	protein-coding	7.95496084005916	7.87489957788658	8.0013989157133	7.57630329327177	7.47888857137734	7.41878999764772	7.20442641772529	7.39880160868534	-0.620881257509968	0.00105086439471532	0.0139995277468541
Merged-chr6-83693989-4	chr6	83693881	83694081	+	867.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_002871, intron 5 of 5)	intron (NR_002871, intron 5 of 5)	-16124.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	4.2872293061942	4.21111347710054	3.79588103596307	4.05876356923209	3.96691501432054	4.28457547379957	4.14053787866411	4.20075659915535	0.120744811533715	0.775681762073046	0.912448391052675
Merged-chr11-117991917-4	chr11	117991813	117992013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 1 of 9)	intron (NR_151726, intron 1 of 9)	5056.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	7.7209855954131	7.7147986200671	7.52872527022241	7.59138830435439	7.4266399212611	7.59175034860414	7.4359550688734	7.27253482697837	-0.271847210470956	0.121677071840369	0.386356101585507
Merged-chr4-141142591-7	chr4	141142482	141142682	+	996.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2786.0	NR_102343	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	4.27614331167608	4.57177510901976	4.75732062757078	4.1715253015646	4.41902432331239	4.78665560935845	4.39485108202966	4.32178052976191	0.0826484936670579	0.837682931492644	0.938459467190736
Merged-chr1-75124924-5	chr1	75124885	75125085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_194333)	TTS (NM_194333)	8905.0	NM_194333	22626.0	Mm.68157	NM_194333	ENSMUSG00000026205	Slc23a3	SVCT3|Yspl1	solute carrier family 23 (nucleobase transporters), member 3	protein-coding	6.93956527401593	6.94866216335332	6.55543790489901	6.85085406474543	7.23409674147137	7.33629747998169	7.4791291731347	7.13215001707039	0.636511856456521	0.00151022486180016	0.0187766454913665
Merged-chr13-98929169-4	chr13	98929044	98929244	+	830.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2760.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	3.94931077171565	3.75038813584497	3.80093027731197	3.786109084123	4.09928191467276	3.80960459189446	3.7326446798415	4.03777942038775	0.330297225836279	0.457522912692543	0.740625034739773
Merged-chr8-119830847-6	chr8	119830763	119830963	+	921.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	9716.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	3.06093223771648	3.01316682823424	3.23364738096066	2.86821843735757	3.12718996382624	3.23282499083179	3.05039319247545	3.11970347011964	0.379634520195177	0.505578196069533	0.771488881809541
Merged-chr7-3915593-4	chr7	3915485	3915685	+	978.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011087)	promoter-TSS (NM_011087)	-84.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	5.80345473453716	5.5688203482306	5.39236838828388	4.7745373519471	5.81539039895231	5.59908453161015	5.79624351252575	5.38859704638914	0.412221908229998	0.228661528789064	0.537491598143225
Merged-chr12-32163849-4	chr12	32163730	32163930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44508.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	7.08309416077713	6.96051028360019	7.14443610730891	7.27116212573463	7.19069466206664	7.04855329446183	7.52280792434647	7.7916434049478	0.39793687524626	0.0753799853067691	0.296467674557991
Merged-chr15-102100380-3	chr15	102100276	102100476	+	841.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2558.0	NM_001355636	209039.0	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	3.61314506509262	3.74456578637605	3.6136247988992	3.72801803675818	3.61734366543491	3.72998197042487	3.65265011403632	3.71660544332399	-0.0152587536973694	0.973626922181666	0.990570637473211
Merged-chr17-50134551-2	chr17	50134412	50134612	+	872.116699	f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	55985.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	3.183055598124	3.32100928172595	3.30130740491885	3.0291416123688	3.17701371935897	3.52526325533027	3.0445460013665	3.4072988750315	0.338647684568815	0.545986663241695	0.796074904807255
Merged-chr13-9764543-4	chr13	9764449	9764649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347472)	promoter-TSS (NM_001347472)	-79.0	NM_001347472	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	6.0612622626969	5.69350358375884	6.4944929791072	6.11545717484285	6.06639188964316	6.1743359062038	5.85517859211578	5.49643308519027	-0.303008825114366	0.30339103764634	0.616033965728963
Merged-chr15-38247344-4	chr15	38247242	38247442	+	957.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28139.0	NM_008757	18285.0	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	4.9382925634323	4.90201794080753	4.90270033586797	4.5935105787856	5.10261796178706	5.47965869058997	5.08176901529649	4.86198729838722	0.628346094435455	0.0609937992592167	0.260988972142721
Merged-chr4-135439447-4	chr4	135439343	135439543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5638.0	NM_022980	53902.0	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	7.07618213306468	7.28216293993217	6.86940187969836	7.09933470704059	7.05272688303999	7.16754377594663	7.07709746664721	7.14229765799804	0.0189763095557416	0.921110185755273	0.970769099300258
Merged-chr3-79233916-3	chr3	79233809	79234009	+	859.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	20990.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	3.36443585402345	3.02289366476961	3.03373142764485	3.44067587782236	3.60147470420456	3.64758932440988	3.46314887815079	3.71922434745099	1.23788396200737	0.029280712828412	0.164575717829625
Merged-chr11-105502530-4	chr11	105502413	105502613	+	930.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45778.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	5.29612797734639	4.46723456330919	4.66853468306729	5.00795957937681	4.37864583928395	4.84425428550291	4.60581509703858	4.81857371425384	-0.482833674156432	0.218003094123916	0.524940535745813
Merged-chr8-126494623-4	chr8	126494523	126494723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19558.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	7.67859147434277	7.66570439204157	8.0290822022974	8.04537722960258	7.5488495755937	7.65783731519821	7.79944001387598	7.6232679129734	-0.28214809580517	0.128174155254701	0.398415135895645
Merged-chr11-29149066-4	chr11	29148971	29149171	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027869, intron 18 of 27)	intron (NM_027869, intron 18 of 27)	18320.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	4.28629627990841	4.54808642553049	4.68370191022241	4.71247712653814	4.87686730598109	4.6093457283035	4.69873518416749	4.75423151468815	0.351412985689969	0.326074790857411	0.63759347119498
Merged-chr10-14705556-4	chr10	14705475	14705675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045824)	promoter-TSS (NR_045824)	-34.0	NR_045824	69412.0	Mm.259735	NR_045824	ENSMUSG00000019865	1700016L04Rik	-	RIKEN cDNA 1700016L04 gene	ncRNA	7.96134602409064	8.25067376427423	8.26054710332528	8.54804152430084	8.47372557962845	8.2786699867797	8.24449771054073	8.33324742874132	0.0716737296625335	0.693112644944493	0.875216252807466
Merged-chr10-8816929-4	chr10	8816826	8817026	+	974.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	69144.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.33829375578596	5.42894273898081	6.14220670821277	6.28781328997106	5.33364826595804	4.98232937883078	5.37458041116537	5.42803411597803	-0.99681616119151	0.0043577390824294	0.0428661567369047
Merged-chr5-134232800-4	chr5	134232698	134232898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3173.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	7.37955731471911	7.60205621918846	7.22457226367397	7.00656509677469	7.44101497321307	7.47687793658457	7.13187744736648	7.09118661478255	-0.01982487062371	0.927205853254772	0.973401357337228
Merged-chr6-112778384-4	chr6	112778306	112778506	+	971.1416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 5 of 21)	MIR3|SINE|MIR	-81736.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	5.24252035602404	4.78262837189854	5.44507936078836	5.6918873587358	4.97196559792165	5.35479910505352	5.44368804939096	5.14259338026464	-0.201752616884046	0.566728994171574	0.807979871732933
Merged-chr6-92100753-2	chr6	92100653	92100853	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347342, intron 1 of 14)	intron (NM_001347342, intron 1 of 14)	8320.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	3.04724565067544	3.02976880697731	3.04767164316022	2.56184377314855	2.90742756817852	2.9743578318215	2.91815440690856	2.86366004993518	-0.0626928293797245	0.922514742318308	0.971298693028147
Merged-chr3-121293381-4	chr3	121293257	121293457	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155539, intron 1 of 2)	intron (NR_155539, intron 1 of 2)	1617.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	4.45548841391837	4.18696771239732	3.79300647351497	4.02523495646748	4.69382586152572	4.74065536711922	4.58450684847954	4.08560622711519	0.988476025819527	0.0224715529400673	0.138461103421144
Merged-chr3-116837182-3	chr3	116837040	116837240	+	827.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22427.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	3.478881790777	3.2016274734899	3.47942376900687	3.21611761087114	2.93281957010035	3.20279523927624	3.0157340125216	3.15282046268744	-1.06626396434535	0.065969795468902	0.273544452503843
Merged-chr1-58652745-4	chr1	58652695	58652895	+	972.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045007, intron 1 of 1)	intron (NR_045007, intron 1 of 1)	154.0	NR_045007	100504501.0	Mm.440933	NR_045007	ENSMUSG00000102059	Gm20257	-	caspase 8 pseudogene	pseudo	4.47711491206824	4.49810732811972	4.80886534672789	4.18829875490202	4.47918804589497	4.42670821909476	4.49829636207732	4.59507012633271	0.0152959955548608	0.968428264306602	0.988694268692349
Merged-chr17-17882828-4	chr17	17882720	17882920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013521, intron 1 of 1)	intron (NM_013521, intron 1 of 1)	1119.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	6.35476899751735	6.52708304701635	6.7202512696198	6.92451184064582	6.1466826722625	6.56867240261977	6.42844552914278	5.78240162936555	-0.588000518592507	0.027961704119657	0.159977987101765
Merged-chr3-136684726-3	chr3	136684631	136684831	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	14665.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	3.43965954593575	3.99308035805156	4.16283896799261	3.92418463222003	2.93875134771428	3.43222632897389	3.01280486834197	3.24416893727651	-2.79764792011144	1.86457712082617e-05	0.000478093425372067
Merged-chr12-80197640-4	chr12	80197528	80197728	+	805.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 4 of 20)	intron (NM_134156, intron 4 of 20)	62743.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	3.68896278334107	3.45173988684347	3.88849179411035	3.54264769115843	3.47992395155798	4.05712135743369	3.72647162797627	3.83919196203406	0.418149279040774	0.398696640627966	0.696826631135204
Merged-chr16-10192948-4	chr16	10192845	10193045	+	971.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153123)	promoter-TSS (NM_153123)	39.0	NM_029253	75329.0	Mm.108729	NM_029253	ENSMUSG00000039200	Atf7ip2	4930558K11Rik|BC018510|Get-1|PSM2	activating transcription factor 7 interacting protein 2	protein-coding	4.38477521285401	4.35786071392628	4.73576720184337	4.79730090016684	4.34316850352796	4.15300428523394	4.57032003924404	4.55024650781201	-0.410164166369617	0.297336106107031	0.609424288660227
Merged-chr6-38535264-4	chr6	38535184	38535384	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025363, intron 1 of 1)	intron (NM_025363, intron 1 of 1)	423.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	4.80058843790839	4.72791305114369	4.87718357165054	4.88864801041022	4.86680265883261	4.89805527561496	5.02428965207609	5.38125766040573	0.444893029702606	0.179216291557244	0.475454208600562
Merged-chr13-56296436-4	chr13	56296300	56296500	+	944.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019568, exon 1 of 4)	5' UTR (NM_019568, exon 1 of 4)	151.0	NM_019568	57266.0	Mm.30211	NM_019568	ENSMUSG00000021508	Cxcl14	1110031L23Rik|1200006I23Rik|AI414372|BMAC|BRAK|KS1|Kec|MIP-2g|MIP2gamma|NJAC|Scyb14|bolekine	chemokine (C-X-C motif) ligand 14	protein-coding	5.20532176392	4.96212632278371	4.97120672887348	5.09786200020178	4.44113784260941	4.44061315472631	4.44175011214499	4.71863874537292	-1.1642311462873	0.000757983315189717	0.010781873379674
Merged-chr2-160237935-4	chr2	160237831	160238031	+	948.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	89563.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	5.12534701931171	5.11545171468743	5.41807945511921	5.4904290466967	4.84943919468489	4.83967253377952	5.33788476416231	5.02030838286477	-0.535163064655672	0.101460242734713	0.349490825767668
Merged-chr19-55286238-4	chr19	55286137	55286337	+	662.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027976, intron 12 of 21)	intron (NM_027976, intron 12 of 21)	29799.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	3.76790908702091	3.42913733764573	3.60570931332527	3.64737371243201	3.89262726372988	3.83559553589253	3.93966866660391	3.86419998394627	0.786371945372773	0.0838974970791875	0.314981799915581
Merged-chr11-120236573-3	chr11	120236479	120236679	+	854.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198423, intron 1 of 27)	CpG	3632.0	NM_198423	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	3.51713378989032	3.48551166654231	3.67455265667446	3.34948040452978	3.50058172809197	3.74226122239606	3.50390079543646	3.57006461208098	0.256928914500701	0.601397154694554	0.82708957558551
Merged-chr13-112667346-4	chr13	112667252	112667452	+	847.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 1 of 14)	intron (NM_178746, intron 1 of 14)	6586.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	4.38882377136041	4.12764551462788	4.00094927517443	4.42317227580882	4.60477622443952	4.28654370251953	4.48831076646488	4.46786254922954	0.497657491140732	0.210346860899361	0.51482976452636
Merged-chr2-12294279-4	chr2	12294202	12294402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001309, intron 2 of 29)	intron (NM_001001309, intron 2 of 29)	-6944.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	6.30821595051258	6.00989191382157	6.09220236976773	6.51384946388037	6.00861076483341	6.15750165642571	6.38078363976524	6.48972292388369	0.00847286333156652	0.973682033208217	0.990570637473211
Merged-chr3-149086717-4	chr3	149086590	149086790	+	823.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132055.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	3.67918403188682	3.49883588247366	3.56475653498959	3.96297132260554	3.88413539217618	3.61934355450573	3.95556131962437	4.01383596247445	0.494296641474162	0.315220084490576	0.627066051646256
Merged-chr6-88627539-3	chr6	88627387	88627587	+	677.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278671)	promoter-TSS (NM_001278671)	-39.0	NM_001278671	74589.0	Mm.196226	NM_029013	ENSMUSG00000033182	Kbtbd12	4833415F11Rik|4933428M03Rik|Klhdc6	kelch repeat and BTB (POZ) domain containing 12	protein-coding	3.55797997417482	3.14860637847136	3.21711710134534	3.29287456112757	3.03288827556287	2.93657840704634	2.82185085243593	3.0983468286987	-1.36022280948072	0.0261886847873989	0.153296414019923
Merged-chr18-80410506-3	chr18	80410401	80410601	+	926.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	-46247.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	3.86151448421755	3.71189787897575	3.65088697511364	4.31424912246379	3.70198326433615	3.70933975235139	3.63725774444522	3.90749708900555	-0.548351303632722	0.273853843120007	0.585558903722128
Merged-chr8-72712750-4	chr8	72712668	72712868	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_176940, exon 19 of 19)	3' UTR (NM_176940, exon 19 of 19)	-10502.0	NM_001113248	20467.0	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	5.19815575325014	5.10188773347236	5.3498016519488	5.20318084991704	5.15044036538498	4.92669511700187	5.76838819093717	5.16307313650457	0.143580307874687	0.664212971089354	0.860892763519835
Merged-chr8-46933861-4	chr8	46933759	46933959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53028.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	5.59977807825888	5.31474148671966	5.17711951173673	5.40951597223447	4.9805729323544	5.38569310992034	5.27838292015157	5.44414184101155	-0.203202588075821	0.503362063218287	0.770370061830951
Merged-chr5-139703058-2	chr5	139702958	139703158	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33275.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	3.59878119133076	3.71982608897843	3.54439545516204	3.27105817110254	3.49473352423051	3.41380628986255	3.6366291065044	3.96692954693422	0.345097720264785	0.506801136596262	0.772520089553395
Merged-chr12-119313604-2	chr12	119313504	119313704	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75328.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	3.42763281359322	3.15394729253654	3.25887691638844	3.64052497732796	3.24715218806124	3.37040181885063	3.36111625301974	3.31608294289893	-0.267966478405568	0.62488506387646	0.839659374707287
Merged-chr6-48699126-4	chr6	48699050	48699250	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9094.0	NM_153175	231931.0	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	4.75988873252429	5.24901690039439	5.71147371978526	5.29784813425155	5.02791866158652	5.06558958511231	5.08188103942766	5.23157410971459	-0.361529645017999	0.288028056641346	0.599960222908101
Merged-chr18-23914705-4	chr18	23914598	23914798	+	869.3249509999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-39990.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	4.38453821795664	4.27552239757046	4.20617929932777	4.41218970947046	4.24335142740321	4.47035511923957	4.44540836678892	4.29607006522089	0.0757725669253674	0.841943265513074	0.940020733877539
Merged-chr8-105290292-5	chr8	105290170	105290370	+	918.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166394)	promoter-TSS (NM_001166394)	-742.0	NM_028888	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	3.50927831293834	2.93338075991403	3.00793096418642	3.46545908022556	3.36298208220992	3.39742767307694	3.92642662337547	3.45448328812384	0.989462759370394	0.112116165260464	0.370075891628389
Merged-chr1-138542303-2	chr1	138542203	138542403	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 3 of 9)	intron (NM_021605, intron 3 of 9)	77454.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	3.02007273414444	3.21598886836793	3.39230934375684	3.06589075010349	3.27394461558832	3.33268398531643	3.48070276793098	3.58944674459	0.896487649423874	0.0974553713271551	0.342033226946185
Merged-chr4-120104793-3	chr4	120104693	120104893	+	767.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 5 of 8)	intron (NM_010657, intron 5 of 8)	-56413.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	3.91817719840149	3.91083299766059	3.77205756654217	4.31384061292635	3.10293366618409	3.72644258022472	3.4068399590668	3.86932354530194	-1.35400063488603	0.0176648167516843	0.117664607109127
Merged-chr13-51849022-4	chr13	51848936	51849136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011817)	TTS (NM_011817)	2361.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	7.72497114746614	7.50356385493776	7.88513796866838	7.85938361506592	7.69268329844236	7.70297805768815	7.86813827604572	7.71292197575494	-0.0128448277784558	0.942012376245967	0.979058454594117
Merged-chr11-64978935-4	chr11	64978822	64979022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023479)	promoter-TSS (NM_023479)	-113.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	8.46600128841384	8.34172584010685	8.18855295100954	8.44450788221162	8.35230573251063	8.37237586258121	8.45707179154866	7.91806454702047	-0.0948155400404149	0.596766438353578	0.824946763915719
Merged-chr2-34913856-1	chr2	34913756	34913956	+	654.75	f0_balb.idr	intron (NM_028716, intron 1 of 14)	CpG	120.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	3.8108774801186	4.00065601063137	3.8595800548299	3.67905471428333	3.7376095059493	3.88121492547725	3.3349734164651	3.59666212096798	-0.553311962682262	0.264300978532531	0.576455127446606
Merged-chr7-43273733-4	chr7	43273748	43273948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER54A|LTR|ERVL	39452.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	5.93837612593473	5.0631173639376	6.02367614022394	5.97630700108867	5.94611983850575	5.95287162471346	5.86492831398378	5.97796960313625	0.20509454243536	0.503194359010484	0.770238732070433
Merged-chr14-121352409-3	chr14	121352312	121352512	+	881.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	26818.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	3.67632241086476	3.64714334756444	3.93468887486899	4.21079187150836	3.88364205853028	3.73550467114115	3.91772875117391	3.78410119369744	-0.203289823434153	0.672661492021374	0.865295074197845
Merged-chr9-120571054-4	chr9	120570978	120571178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025974)	promoter-TSS (NM_025974)	-439.0	NM_025974	67115.0	Mm.289810	NM_025974	ENSMUSG00000025794	Rpl14	3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14	ribosomal protein L14	protein-coding	6.48224306540882	6.31450618810809	6.59728524855216	6.46087040686172	6.68988791654992	6.53526920511858	6.84023312989858	6.46162208598547	0.260149392932527	0.228309498966406	0.537146883946909
Merged-chr6-124818073-4	chr6	124817988	124818188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326594, intron 15 of 19)	intron (NM_001326594, intron 15 of 19)	-3792.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	6.0971984135301	5.69015083091541	6.19425067614818	6.24014868867251	5.76511391268988	5.73934348514705	6.10609064944531	6.03263349066962	-0.25577117879994	0.336786459725132	0.646671794355953
Merged-chr11-79878311-4	chr11	79878231	79878431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84056.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	5.8081125522072	5.53490506323171	5.36099169034533	5.988704896303	5.69104567880071	5.44119988686771	5.36553255425245	5.4777434519381	-0.347815435774762	0.242072103375721	0.552718619560545
Merged-chr9-14867185-4	chr9	14867106	14867306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010287, intron 3 of 3)	intron (NM_010287, intron 3 of 3)	6996.0	NM_010287	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	5.68638290353792	5.6812860079274	5.87816421323115	6.04557198730076	5.54221317662277	5.67065495585718	5.95351462165392	5.51884073751243	-0.274707536461081	0.316787734524401	0.628743667727529
Merged-chr1-64376579-4	chr1	64376469	64376669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-156235.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	6.65083153401147	6.75402647573673	7.17090546674402	6.96304846224492	6.6371115076784	6.60795298206024	6.77902751260224	6.58295799555925	-0.352410033687372	0.101967517344945	0.35054073494788
Merged-chr6-65594383-4	chr6	65594293	65594493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001495, intron 2 of 7)	intron (NM_001001495, intron 2 of 7)	3995.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	7.13124592562888	7.1524232350249	7.21196036824734	7.20415941846246	7.13403412688134	7.27375378085271	7.28095192534246	7.27121524806628	0.0810029009577754	0.648675947305412	0.852385954364293
Merged-chr7-73628278-4	chr7	73628169	73628369	+	869.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	58294.0	NR_033604	244061.0	Mm.484605	NR_033604	ENSMUSG00000108337	Gm4971	EG244061	Smad nuclear interacting protein 1 pseudogene	pseudo	4.60531600017863	4.19604080526469	4.16004421383787	4.25664806045889	4.15431907437593	4.33452832368494	4.44047391552511	4.00347218917441	-0.173658045133455	0.67261677766029	0.865268829717189
Merged-chr13-108335428-4	chr13	108335353	108335553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178683, intron 2 of 10)	intron (NM_178683, intron 2 of 10)	19116.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	6.80195341310098	6.43265232077442	6.26208695727594	6.80008537232611	5.97605951197469	5.56533739589204	6.07054604799223	5.81215658383021	-1.10488962173217	2.74862211251e-05	0.000673937903363243
Merged-chr2-93590074-4	chr2	93589993	93590193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52341.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	7.14806012115823	6.82691390465334	7.50519331640104	7.54813335245958	7.05377075707918	7.10205552140578	7.04305164947201	6.91949949569655	-0.362812477318231	0.107176003538566	0.361185644163901
Merged-chr15-99029065-4	chr15	99028942	99029142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009448)	promoter-TSS (NM_009448)	-849.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	6.35417917009749	6.57279780068262	6.37399189999298	6.21876537933427	6.71322086542066	6.53252776275226	6.76101142778979	6.7907673382569	0.477750361785662	0.0264124459371697	0.154117654071583
Merged-chr2-167923761-4	chr2	167923664	167923864	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-8563.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	5.04083411085423	4.75130905948391	5.00900250826684	4.56925579911158	4.94631706317942	4.61926167901594	5.10931722399655	5.29906310420861	0.350873607063661	0.324908156239127	0.63644873415375
Merged-chr15-35155839-4	chr15	35155726	35155926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019635)	promoter-TSS (NM_019635)	-20.0	NM_019635	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	8.83087894412746	8.76124760180709	8.85165884622334	8.99377261496097	8.63939665642216	8.51161867369396	9.02667403675593	8.53258065196635	-0.211059369575705	0.224356300764	0.532705888721088
Merged-chr4-132596493-2	chr4	132596393	132596593	+	901.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32426.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	2.66466493186154	2.40373961819112	2.37857124332465	2.87477709416108	2.6508923762014	2.77044580801357	2.88737344207588	2.72647475011856	0.738755634478078	0.323061482410239	0.634542709690621
Merged-chr3-145924908-4	chr3	145924792	145924992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009740, intron 1 of 2)	CpG	630.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	5.95848730300627	6.22621070265677	6.11485387898292	5.75799164852746	6.38432443196238	6.22742493674355	6.50309428255614	6.35614751951154	0.553407428670165	0.021631366815528	0.134872026853755
Merged-chr17-25015367-3	chr17	25015262	25015462	+	917.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020608)	promoter-TSS (NM_020608)	-132.0	NM_020608	57354.0	Mm.328854	NM_020608	ENSMUSG00000038002	Cramp1l	5830477H08Rik|AI256853|AI790734|Cramp1|Tce4|mKIAA1426	cramped chromatin regulator homolog 1	protein-coding	4.34432324837757	4.42202644169461	4.43197100747254	4.11337735632023	4.47863775244793	4.56201253621572	4.41176176042582	4.58686503131096	0.447432973003616	0.231339062377628	0.540831366410565
Merged-chr1-7077998-3	chr1	7077878	7078078	+	843.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-10942.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	3.01488955253759	2.94508536137352	2.96085157419268	3.16653498399923	2.68841552255451	2.5177174626425	2.63992364338075	2.57340923106469	-2.16749497047195	0.0028046305435705	0.0303159905027798
Merged-chr5-135478978-2	chr5	135478871	135479071	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_146001, intron 1 of 30)	B4|SINE|B4	66151.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	6.36511905472289	6.68542249738964	6.47023766081281	6.58421422413197	6.16016112615512	6.44919075585806	6.46980127270128	6.07967866040213	-0.360892476787345	0.115973796150559	0.376746786372172
Merged-chr1-64907915-3	chr1	64907815	64908015	+	632.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 3 of 7)	intron (NM_001039493, intron 3 of 7)	48909.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	3.96551743920002	4.00116525404359	4.10070339246823	4.48177524905981	3.59501635766273	3.56878899476487	3.57146434598503	3.86553786774463	-1.49831772577585	0.00210181783068865	0.024298406914177
Merged-chr11-68446130-3	chr11	68446052	68446252	+	936.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	URR1B|DNA|hAT-Charlie	14027.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	3.88134200336047	3.79582917340049	3.74311058129972	3.65292253538975	3.62116876746085	3.52465101193871	3.62665673544699	3.27606953051457	-0.765927337412412	0.124569513927867	0.391884975827738
Merged-chr5-140735499-4	chr5	140735388	140735588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	11361.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	8.14994092455315	8.28080864603187	7.92793149367248	8.31764519992806	8.04454289978411	7.62012493246371	7.96632808545509	7.8176451145967	-0.393147465207838	0.0316740766469674	0.173541522042107
Merged-chr6-126996556-4	chr6	126996450	126996650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18992.0	NM_010204	14177.0	Mm.3403	NM_010204	ENSMUSG00000000183	Fgf6	Fgf-6|HSTF-2	fibroblast growth factor 6	protein-coding	6.90611720297069	7.10629883118035	7.11155336660844	6.76631586103459	6.90537469908947	6.80863780217896	6.84603735850404	6.3953468911699	-0.299609897436181	0.175220871137783	0.469912833953675
Merged-chr15-62060153-4	chr15	62060050	62060250	+	994.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	20893.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	5.57281115618816	5.17231012510273	6.08692271623825	6.29210336180496	5.68996386955748	5.93649210766608	5.73127864713329	5.94084490624947	-0.0668512274921875	0.840962624560222	0.939493339824403
Merged-chr2-75936820-3	chr2	75936727	75936927	+	859.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028235, exon 1 of 1)	exon (NM_028235, exon 1 of 1)	1635.0	NM_028235	72421.0	Mm.275109	NM_028235	ENSMUSG00000075273	Ttc30b	2510042P03Rik|Tcc30b	tetratricopeptide repeat domain 30B	protein-coding	3.98106252696427	4.21284213946728	3.93362787158011	3.77926827669426	3.84866119956375	4.10471492008785	3.64932212349976	3.82966837327616	-0.318271392060176	0.488326175349634	0.76118893988362
Merged-chr6-125481239-4	chr6	125481128	125481328	+	764.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007657, intron 1 of 7)	intron (NM_007657, intron 1 of 7)	13532.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	3.59418725953787	3.56048355513959	3.42081513406356	3.73440869030938	3.84773127690982	3.71031431688079	3.63365168110211	3.69732493318628	0.415864685721093	0.385591029191636	0.686973965429301
Merged-chr6-125294183-4	chr6	125294072	125294272	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-8091.0	NM_009446	22144.0	Mm.270295	NM_009446	ENSMUSG00000067702	Tuba3a	AI528779|M[a]3|Tuba3	tubulin, alpha 3A	protein-coding	5.567403769716	5.54434951514419	5.31649554918014	5.45465188887291	5.48076527171366	5.42900030123762	5.48882630305211	5.03806478507529	-0.170363586926179	0.555464109124537	0.801552524497738
Merged-chr2-79048894-4	chr2	79048798	79048998	+	962.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	179220.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	4.82644642646335	5.38480956836697	4.74419310339709	4.95539357213667	5.12268517000414	5.51935609504703	5.15180125369839	4.78325488790793	0.30618853539287	0.389766000511158	0.690041185689413
Merged-chr8-57577505-2	chr8	57577405	57577605	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 2 of 11)	intron (NM_001167981, intron 2 of 11)	65662.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	3.43077974727794	3.87885529249076	3.37082439634596	2.98719642431195	3.73722681452424	3.60677307691148	3.52982342634755	3.4870811518823	0.44789455805231	0.434174301210655	0.723510148432482
Merged-chr3-144689455-3	chr3	144689360	144689560	+	946.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019464, exon 9 of 9)	3' UTR (NM_019464, exon 9 of 9)	30875.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	4.6817272627699	4.61204267693874	4.28345082434298	5.41592928888123	3.9489204046563	3.69170237497249	3.95313116907555	3.96700283788801	-2.30935421331682	3.37790725965959e-06	0.000104537417754483
Merged-chr13-32801045-4	chr13	32800947	32801147	+	931.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030215)	promoter-TSS (NM_030215)	-983.0	NM_030215	78903.0	Mm.286680	NM_030215	ENSMUSG00000021400	Wrnip1	4833444L21Rik|WHIP|Wrnip	Werner helicase interacting protein 1	protein-coding	4.88591415349152	4.73416848115876	4.77455960194998	4.77289776851864	5.00948493081095	5.12825231916604	5.14766183045931	4.60516624281345	0.400556914984595	0.229655720923301	0.538782615675663
Merged-chr4-133117715-2	chr4	133117615	133117815	+	863.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12918.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	2.93700463030215	2.60278149604587	2.73682446478826	2.82822282999622	3.01197434092727	3.167612367396	3.04360945719724	3.10950183356339	1.27918713046647	0.0365306136625936	0.190213061440362
Merged-chr2-181520407-4	chr2	181520308	181520508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016775)	promoter-TSS (NM_016775)	-77.0	NM_016775	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	8.41757135599355	8.43467354376425	8.46388583574262	8.30854681080857	8.23646573770719	8.26586809344814	8.3064862795675	8.166587596376	-0.201928306574085	0.177190583910567	0.472449504292692
Merged-chr4-141857656-4	chr4	141857590	141857790	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025994)	TTS (NM_025994)	-11331.0	NM_001033875	76701.0	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	4.69313553766546	4.74751286111373	4.5282569693072	4.54297352377491	4.78918614369344	4.82778468270626	5.00743150019212	4.72924318523168	0.456239506909577	0.174929700777883	0.469590383048546
Merged-chr12-87267334-2	chr12	87267234	87267434	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146036, intron 1 of 8)	intron (NM_146036, intron 1 of 8)	606.0	NM_146036	217737.0	Mm.22626	NM_146036	ENSMUSG00000021037	Ahsa1	BC023857|p38	AHA1, activator of heat shock protein ATPase 1	protein-coding	3.22618504541953	3.42623953554279	3.22660058486079	3.48618127426961	2.86636276939498	3.0794826038314	3.21458294781501	3.28162992990847	-0.928125563630743	0.112666620788321	0.371164117006215
Merged-chr2-180726923-4	chr2	180726844	180727044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183161, intron 1 of 12)	intron (NM_183161, intron 1 of 12)	1605.0	NM_183161	228993.0	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	5.5881453944215	5.87237252544567	6.16506110011855	5.89846837061055	5.87605812656624	5.82381464485168	5.97699594314685	6.06472239242767	0.0647014779978747	0.801268500668895	0.923340719847852
Merged-chr3-86947634-4	chr3	86947521	86947721	+	888.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-26737.0	NM_001195498	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	6.83870427161521	6.92317647659375	7.01381245447775	7.1841308509795	4.88164773125848	5.00283790468047	4.92484481048452	5.03957388608093	-3.39548301619244	2.20990764140057e-33	3.41954382624459e-30
Merged-chr14-75787045-4	chr14	75786973	75787173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026232)	promoter-TSS (NM_026232)	-36.0	NM_026232	67554.0	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	8.18081433415372	8.17706921844931	8.13322656747317	8.21258035332081	8.24859371518994	8.2468479531235	8.15536611151856	7.86514549685961	-0.0473930549757401	0.77362200323637	0.91153187499357
Merged-chr8-33929949-6	chr8	33929895	33930095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286168)	promoter-TSS (NM_001286168)	-132.0	NM_001042675	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	5.19244012165599	5.46223875168633	5.44942285501869	4.98392765132276	5.69775628830448	5.86041675698946	5.50564822522629	5.94250419952747	0.843995029962894	0.00400593622814734	0.0401208012921485
Merged-chr10-121376616-4	chr10	121376515	121376715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 4 of 13)	intron (NM_029364, intron 4 of 13)	11525.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	5.53157115416098	5.56153814398819	5.87992660451946	5.98882988661611	5.51249011052572	5.81641963916384	5.47676677365103	5.83177443451499	-0.179420323058442	0.526902095444396	0.784003266334357
Merged-chr5-130256978-4	chr5	130256893	130257093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001015876)	promoter-TSS (NM_001015876)	-44.0	NR_153350	100929.0	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	8.27979267903809	8.54873495068639	8.19140411543241	8.43404140277016	8.32926559782961	8.59550521862277	8.44882799380736	8.4874962114876	0.113626342905032	0.487198051048543	0.760600900973846
Merged-chr13-41074035-4	chr13	41073928	41074128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145802, intron 1 of 11)	intron (NM_001145802, intron 1 of 11)	-3563.0	NM_008547	17152.0	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	5.3187488217527	5.74225033283035	5.38173701161017	5.20896406773676	5.51174983077237	5.80185158121374	5.22867228750916	5.74351480589077	0.283711256643816	0.352870128882268	0.659774170682471
Merged-chr14-74913758-4	chr14	74913688	74913888	+	956.828552	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	34089.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	3.94517236486295	4.38587360650373	4.55245050974289	4.1813864681816	4.34065796678264	4.43536195100401	4.49336425868156	4.51170660290067	0.387081130227506	0.32868355086796	0.640138323335519
Merged-chr2-118814154-4	chr2	118814051	118814251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026412, exon 1 of 9)	exon (NM_026412, exon 1 of 9)	148.0	NM_026412	51944.0	Mm.252695	NM_026412	ENSMUSG00000027331	Knstrn	1700025D04Rik|C15orf23|D2Ertd750e|SKAP|Traf4af1	kinetochore-localized astrin/SPAG5 binding	protein-coding	6.02752222831146	6.07113724628317	5.98599094655097	5.92415597753852	6.08254690908826	5.53728864883421	6.17232080651239	5.89202237280301	-0.0728819145066535	0.778315677788391	0.913689436928734
Merged-chr3-9666554-2	chr3	9666454	9666654	+	928.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56469.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	3.26196916186279	2.7029588906807	3.09745259197146	2.94357536506656	3.2475909673917	3.08392229016494	3.08574937166501	3.03586331120657	0.430207856665566	0.48009757545191	0.755678709554239
Merged-chr5-39644660-4	chr5	39644505	39644705	+	852.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010474)	promoter-TSS (NM_010474)	26.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	3.46627408037719	3.34281002486335	3.35063059104673	3.54541767401551	3.26319150223392	3.63730061258521	3.65544565156227	3.51913542554082	0.282963682757017	0.582515360281176	0.816616000895218
Merged-chr12-86740229-4	chr12	86740137	86740337	+	966.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195767, intron 3 of 14)	B3A|SINE|B2	5868.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	4.75162528205796	4.77373860080969	4.54451337282937	5.00807440352814	5.14192776583441	4.6283181176084	4.84057854746306	5.02604661496376	0.277767057893446	0.434322370170095	0.723629649561421
Merged-chr13-58453227-4	chr13	58453105	58453305	+	978.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49862.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	4.3996163534058	4.99898479920578	4.35132168141819	4.52686246690551	4.59008217293116	4.83441206377099	4.82046511360468	4.8743340164126	0.381668766920287	0.309409975792587	0.621662432848957
Merged-chr18-54997748-4	chr18	54997634	54997834	+	987.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5143.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	4.97399750116185	4.91183294928821	4.9748249675875	4.98628228331299	5.25332563020389	5.60444804528973	5.52724403726894	4.77330222265024	0.674628448673345	0.0432648321427762	0.211641891107403
Merged-chr4-3799833-1	chr4	3799733	3799933	+	635.0	f1_balb.idr	Intergenic	Intergenic	35822.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	2.54922598167688	2.78839550192933	2.47853158370649	2.3799920311584	2.49186322281007	2.78887871436419	2.73131515517845	2.67965694001705	0.613107452995588	0.371765722857398	0.675721058891926
Merged-chr5-125358400-4	chr5	125358283	125358483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17289.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	7.85999798517209	7.72475150715073	7.81646439267831	7.89678756441768	7.87053458863546	7.89900319302993	7.80860283767343	7.7246146184191	-0.000965743710835705	0.995242863169235	0.998265838137867
Merged-chr12-105731205-5	chr12	105731108	105731308	+	838.47998	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030187, intron 5 of 17)	intron (NM_030187, intron 5 of 17)	25226.0	NM_030187	78801.0	Mm.36006	NM_030187	ENSMUSG00000041323	Ak7	4930502N02Rik|AK 7	adenylate kinase 7	protein-coding	3.21722999690454	3.26274893624025	3.58942291843915	3.05009375780464	3.2408838935674	3.45001560831484	3.26542005426195	3.27604689082298	0.0873849945633859	0.874706940325356	0.952925927223413
Merged-chr5-88572087-3	chr5	88572015	88572215	+	737.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289774, intron 1 of 17)	intron (NM_001289774, intron 1 of 17)	7075.0	NM_001289775	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	3.34785960202387	3.37672312711531	3.28964024152229	3.42977511874816	3.36761513260998	3.33889550682522	3.44443440349114	3.50767440680435	0.165197784895794	0.744398384001266	0.899294498800491
Merged-chr13-104286051-4	chr13	104285925	104286125	+	941.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1810.0	NR_136938	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	4.74789033926139	4.6411214738929	4.44938695624857	4.55634770970359	5.34141310379216	4.80485066406439	4.60737636209278	4.95589812501158	0.76228195021038	0.0362798750695356	0.189439182436486
Merged-chr6-91510447-4	chr6	91510324	91510524	+	802.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009531, intron 2 of 15)	intron (NM_009531, intron 2 of 15)	5464.0	NM_009531	22591.0	Mm.2806	NM_009531	ENSMUSG00000030094	Xpc	-	xeroderma pigmentosum, complementation group C	protein-coding	3.58297306962728	3.35223381917179	3.69032339262925	3.59283413028152	3.58965988930928	3.45451373983345	3.81837187084658	4.00348362784663	0.528475418389162	0.289420706178876	0.601426348430182
Merged-chr13-111942099-4	chr13	111942009	111942209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	74173.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	6.1643643399777	6.48829579561037	6.1272728869354	5.88729299205076	5.95503928898871	5.60116305312734	5.81618802249933	5.60294570552414	-0.65690539053396	0.0168900050919756	0.11407509328568
Merged-chr7-111373589-4	chr7	111373498	111373698	+	996.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-250923.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	5.59185397021137	6.17784152052505	6.38230033500511	6.02615431166489	6.92267883379007	6.99178809555071	7.02828535584401	6.98176746957862	1.31373751448496	2.76873042273958e-08	1.34430738581296e-06
Merged-chr2-160152329-4	chr2	160152209	160152409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	135656.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	7.85862136436892	7.77361246203584	7.99037835258627	8.03667246979771	7.56635715341803	7.65863287902012	7.65977854474253	7.52490506786229	-0.421895115190658	0.0123038008215031	0.0914740169912025
Merged-chr6-42344410-4	chr6	42344376	42344576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5352.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	5.7253964904529	5.49992468202088	6.18326761796939	6.02506269678406	5.51514354490978	5.41506893377068	5.34158312205852	5.12100480718464	-0.891139865740127	0.00315636578164096	0.0332069690629497
Merged-chr7-107047771-4	chr7	107047704	107047904	+	873.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11668.0	NM_147034	259036.0	Mm.377801	NM_147034	ENSMUSG00000073898	Olfr713	MOR263-1|P3	olfactory receptor 713	protein-coding	3.88370622244216	3.52637890418377	4.52737012678046	4.37593159297512	3.88811378503819	4.21573611329987	3.97411855624185	4.26410024111623	-0.121704527426096	0.812293575892842	0.927484347824058
Merged-chr6-90463665-4	chr6	90463572	90463772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355668, intron 1 of 2)	CpG	1096.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	5.01263512308332	5.23627906760338	5.24616058846526	5.69113880632543	5.08903387958986	5.03815781823835	5.24998551417393	5.0460158682572	-0.437908960068454	0.181382602129568	0.477976833030267
Merged-chr7-24856687-3	chr7	24856596	24856796	+	791.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12995.0	NM_182785	232973.0	Mm.189648	NM_182785	ENSMUSG00000062732	Lypd4	4933400F01Rik	Ly6/Plaur domain containing 4	protein-coding	4.18815134322375	3.93213889450008	3.93219916027046	3.82478887106307	3.62879316859938	4.00610011995394	3.8176114980596	3.41450615631701	-0.695864627456417	0.152211622225562	0.436179513990576
Merged-chr4-58909927-4	chr4	58909840	58910040	+	913.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355697, intron 1 of 49)	L1MB3|LINE|L1	1990.0	NM_001355697	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	4.34136123163474	4.08228255469963	3.83065943017612	4.09623048177951	4.22693852134812	3.83138509810411	3.97492126403481	4.26038986098687	-0.0182735576455109	0.966764455495049	0.98827125057708
Merged-chr1-184675931-4	chr1	184675814	184676014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36583.0	NR_040627	74971.0	Mm.410816	NR_040627	ENSMUSG00000092578	4930488B22Rik	-	RIKEN cDNA 4930488B22 gene	ncRNA	5.54851287948781	5.6761107886822	5.43721405013278	5.95431912963156	5.28033711991706	5.61216474936166	5.22506694422387	5.64867754107414	-0.417420224218708	0.163075861416485	0.45269594554674
Merged-chr19-44385333-4	chr19	44385239	44385439	+	953.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	22370.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	4.78578178981708	4.89758865082038	4.24031666126575	4.24919156031672	4.79316264514102	4.736182322358	4.58123968513132	4.28889769944013	0.102502108995476	0.803742857525527	0.924336354580751
Merged-chr7-100431307-4	chr7	100431170	100431370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 22 of 32)	intron (NM_001017985, intron 22 of 32)	-41721.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	6.62350927850765	5.96901423880792	6.64095548923291	6.39334430494968	7.35506936368504	7.15632954260028	7.45250483218392	7.12549003196345	1.19856516908571	1.54282563915032e-07	6.36685928890247e-06
Merged-chr3-65680768-4	chr3	65680670	65680870	+	948.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037923, intron 2 of 2)	intron (NM_001037923, intron 2 of 2)	14542.0	NM_001166659	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	4.15588834482897	4.60323293522869	4.77866712081076	4.8650667305473	5.42332786874326	4.87612550521553	4.99662892589006	4.84964936690632	0.854560014150945	0.0287633487898758	0.162953390919657
Merged-chr8-60865772-3	chr8	60865686	60865886	+	821.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24607.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	3.51660694994395	3.18904073390444	3.41114186551275	3.66644453204173	3.31260725208367	3.40798622358331	3.50249993987894	3.16761868642484	-0.397805430405506	0.465354487875581	0.745811792142008
Merged-chr4-120666491-4	chr4	120666409	120666609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019563)	promoter-TSS (NM_019563)	-54.0	NM_019563	56222.0	Mm.272646	NM_019563	ENSMUSG00000070803	Cited4	MRG-2|Mrg2	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	protein-coding	5.97956378837968	5.9717324623245	5.66246576176965	6.14050304652015	6.03108197742836	5.81240690408144	6.0533089689052	5.93234097489759	-0.00141088795793728	0.995560281273755	0.998377456742254
Merged-chr14-32159846-4	chr14	32159716	32159916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033988)	promoter-TSS (NM_001033988)	-71.0	NM_001033988	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	6.30331899838164	6.12516007621774	6.62014116088953	6.30262805737245	6.30943551853186	6.60567886461224	6.30920023244982	6.53979204273032	0.144941041069904	0.533950434442499	0.789042708189764
Merged-chr7-16401130-6	chr7	16401035	16401235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198631)	promoter-TSS (NM_198631)	-61.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	5.78591450634848	5.60441080619676	5.9490540222529	5.91056919433549	5.61136940036605	6.16569549466993	5.80571112458113	6.10746486179256	0.173069813399173	0.524303553993724	0.782862647284333
Merged-chr19-60837886-1	chr19	60837786	60837986	+	641.0	f1_balb.idr	3' UTR (NM_001362384, exon 15 of 15)	3' UTR (NM_001362384, exon 15 of 15)	23542.0	NM_001362385	94281.0	Mm.48179	NM_053198	ENSMUSG00000063698	Sfxn4	-	sideroflexin 4	protein-coding	2.36888977112321	2.31826025374996	2.36907676147353	2.21238285360199	2.81380202250671	3.27744373519682	2.98405730667462	3.20298602838884	4.4532061920554	5.47399001127835e-07	2.01673465327527e-05
Merged-chr11-5485432-4	chr11	5485334	5485534	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35207.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	5.40111467482982	5.67544063798471	5.2325729983306	5.17039744631986	5.9937777852367	5.91160184102235	6.23502993975305	5.84901026616807	1.04758349775688	0.000153790063940086	0.00290978813428798
Merged-chr17-78604128-1	chr17	78604028	78604228	+	730.0	f0_balb.idr	intron (NM_001197028, intron 8 of 12)	intron (NM_001197028, intron 8 of 12)	96065.0	NM_028813	74199.0	Mm.292983	NM_028813	ENSMUSG00000024076	Vit	1700052E02Rik|1700110E08Rik|2810429K11Rik|AKH|akhirin	vitrin	protein-coding	3.1224496440023	3.30119672126142	3.23822948466293	3.27407248807626	3.18340482508351	2.96233132339582	3.32997165442003	2.92685708541779	-0.477514224494328	0.409976764373552	0.70533285261753
Merged-chr6-50944026-3	chr6	50943947	50944147	+	891.955566	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	167932.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	3.45447096805008	3.34585193946276	3.64584243918277	3.53560378244178	3.88913054587665	4.30558075385422	4.19507585977185	4.13404102857419	1.80567892648754	0.000130892434564074	0.00254617246964812
Merged-chr10-42478553-4	chr10	42478478	42478678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145743)	promoter-TSS (NM_145743)	-13.0	NM_145743	215951.0	Mm.89646	NM_145743	ENSMUSG00000038302	Afg1l	CG8520|Lace1	AFG1 like ATPase	protein-coding	7.97158020495972	8.01590888582164	7.90942181761883	7.85380822043718	8.05944876056303	7.98910883932784	8.08316215346141	7.85248541212373	0.0849121186772748	0.597281119999927	0.825240678531284
Merged-chr2-158768607-4	chr2	158768496	158768696	+	811.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027975, intron 1 of 3)	CpG	497.0	NM_027975	71878.0	Mm.85162	NM_027975	ENSMUSG00000027654	Fam83d	2310007D09Rik|BB104611	family with sequence similarity 83, member D	protein-coding	3.97563989867086	3.98307598660086	4.07021137518559	3.94926625512811	3.93953288430823	4.14752682309946	3.63251051265095	4.15505618705347	-0.025916079798548	0.953169224914741	0.983323655910652
Merged-chr1-151002125-4	chr1	151002029	151002229	+	866.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-8694.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	3.86334588246894	3.85305023727783	4.22845107776408	4.13747083993041	3.87754807142208	4.03750420392689	3.62164706963185	4.10114503518567	-0.315176760028225	0.489797237147784	0.761966459176932
Merged-chr11-107441195-4	chr11	107441109	107441309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	29511.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	6.84958771453878	6.8389402594137	7.00435303484521	6.70739208083137	7.04493397093092	6.99971720025035	6.82950233482243	6.48606989257862	0.0248480426849477	0.90938966010102	0.966313685692304
Merged-chr3-82876576-4	chr3	82876472	82876672	+	819.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277170)	promoter-TSS (NM_001277170)	-89.0	NM_001146328	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	3.95804428250115	3.46754832506501	4.13028082613492	4.14747306451578	3.43801653059819	3.98569715856562	3.84665438831953	3.52477429004304	-0.701754062425384	0.181983467292059	0.478656463616195
Merged-chr18-84848687-3	chr18	84848589	84848789	+	952.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD2|LINE|L1	-2649.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	3.72218842197167	4.0619766068958	3.97054313811615	4.05237733141455	3.89874303076965	3.59903960390803	3.76118048141069	3.60672059714677	-0.677276636379777	0.14872630665776	0.430648026262822
Merged-chr15-68258550-2	chr15	68258450	68258650	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152182, intron 1 of 13)	CpG	306.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	6.77014163095236	7.21782523556175	6.5661117206371	6.54780764383316	6.88351222170524	7.00494818908083	6.97403205254933	6.93009672134112	0.204593404893792	0.37468869544435	0.677891254741963
Merged-chr12-55399169-2	chr12	55399069	55399269	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011968, intron 1 of 6)	CpG	344.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	4.41748413478902	4.57692377995477	4.56963036513511	4.27411696480354	4.11308453166837	4.1690582399014	4.35713379273492	4.14651135404438	-0.636975030423234	0.107310602738743	0.361382260156614
Merged-chr13-17983370-4	chr13	17983267	17983467	+	984.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9984.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	5.00506942226025	5.05803255270333	4.70202929852374	4.75858551690557	5.38692052275425	5.03809323212001	5.04690514515828	4.82133781380882	0.427057341334241	0.204190247661104	0.507403213177969
Merged-chr17-27850745-5	chr17	27850643	27850843	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011432, intron 5 of 5)	intron (NM_011432, intron 5 of 5)	-5764.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	3.58289461479528	3.98586275504471	3.46243204516315	3.58997515702618	3.69688333840513	3.7007735095957	3.73067355415551	3.97604258108465	0.324918530614457	0.502982568997224	0.770096714963506
Merged-chr14-55886114-4	chr14	55886020	55886220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027143, intron 2 of 7)	intron (NM_027143, intron 2 of 7)	1178.0	NR_138134	219094.0	Mm.37592	NM_027143	ENSMUSG00000047153	Khnyn	6330555F21|9130227C08Rik|AI605259|Kiaa0323|mKIAA0323	KH and NYN domain containing	protein-coding	6.71067015034718	6.78074592877979	6.25380707594843	6.89832882558824	6.81340484648474	6.91713924511622	6.67766079424759	6.67718794726265	0.110111990742992	0.629622551754265	0.842339368939137
Merged-chr1-195092319-4	chr1	195092205	195092405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132621)	promoter-TSS (NR_132621)	-57.0	NM_010778	17221.0	Mm.12884	NM_010778	ENSMUSG00000016493	Cd46	Mcp	CD46 antigen, complement regulatory protein	protein-coding	5.68069174330388	5.8010213998884	6.10959396788902	6.35774939531286	5.67399361191396	5.68917530573195	5.95883297110179	5.62298357122683	-0.469473602107287	0.099037800548912	0.345001302073656
Merged-chr18-60501365-7	chr18	60501294	60501494	+	940.552368	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134133, exon 1 of 2)	5' UTR (NM_134133, exon 1 of 2)	589.0	NM_134133	106878.0	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	3.66404211714341	3.03910748134327	3.45200597190413	3.02801970901905	3.3106279959314	3.78665989843291	3.49380609034606	3.84438366256589	1.01085596292477	0.0813250481883063	0.309417833291006
Merged-chr10-122604239-4	chr10	122604137	122604337	+	919.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34346.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	3.64532496194123	3.79284053533315	3.99489489713987	4.22333534835442	3.9744296870971	4.55688892418005	4.47522942934531	4.04276489584877	0.849306462074758	0.0776008350141852	0.301273581077489
Merged-chr16-4210464-3	chr16	4210360	4210560	+	711.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025432, intron 1 of 30)	intron (NM_001025432, intron 1 of 30)	2944.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	3.27570170531254	3.48985814271713	3.44468609697691	3.42314879875928	3.49258287197252	3.11929526245629	3.32252737824748	3.3890950077286	-0.234603380683106	0.658762378621005	0.858006355862113
Merged-chr13-37857938-4	chr13	37857851	37858051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	-30483.0	NR_033218	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.10816863320238	6.2686002232184	6.40922254384746	6.04859832884817	6.3026577912181	6.40569072406015	6.05684016805408	6.26367705340982	0.088397828570503	0.706947345269691	0.882312931718287
Merged-chr1-180302910-4	chr1	180302798	180302998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27578.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	7.57534681942846	7.96730062187809	7.89353509061386	7.67647678286006	7.93258508053562	8.00468881491236	8.1419369480663	7.51471221541667	0.172974935173657	0.386312763920211	0.687552275421561
Merged-chr6-87466448-4	chr6	87466357	87466557	+	780.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104483, exon 8 of 11)	non-coding (NR_104483, exon 8 of 11)	29870.0	NR_104483	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	3.23258661135527	3.65234530181152	3.23293683407625	3.34786367905756	3.62491138420541	3.64725332079305	3.56812123335678	3.58096489124444	0.742780716715536	0.144683406315757	0.423824051291683
Merged-chr4-101648832-4	chr4	101648724	101648924	+	906.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175036, intron 1 of 3)	intron (NM_175036, intron 1 of 3)	1041.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	4.00473098100237	4.26577834841337	4.27321905322138	4.70957444915306	4.27839796270818	4.49729447049286	4.9428052875552	4.6827279148563	0.584374973935121	0.182133921024618	0.47878218634963
Merged-chr2-46442169-4	chr2	46442090	46442290	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	745585.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	4.44724330858949	4.46154745230205	4.56412250454164	4.44811030484259	4.26199366671774	4.44803339780555	4.209055790189	4.17553397669212	-0.483836534586533	0.199763396034001	0.501692144742932
Merged-chr4-131922233-3	chr4	131922189	131922389	+	871.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001201367, exon 1 of 1)	exon (NM_001201367, exon 1 of 1)	518.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	2.82357866553567	3.06955423532321	3.01894538882668	3.07402588483778	2.81489972685115	3.06473132612571	3.06684570313694	3.33442452062923	0.310324350974004	0.610122253089492	0.831490012304599
Merged-chr8-25537904-4	chr8	25537801	25538001	+	984.5750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079909, intron 2 of 16)	intron (NM_001079909, intron 2 of 16)	18182.0	NR_110510	102633315.0	Mm.437828	NR_110510	ENSMUSG00000086134	Gm16159	-	predicted gene 16159	ncRNA	5.20421682283895	4.80171592713855	5.91088737166507	5.68488635912322	5.18003818125867	5.12756587897591	5.55362071680315	5.62727303222788	-0.147381163557782	0.690032153140974	0.873708755939177
Merged-chr15-82152175-4	chr15	82152080	82152280	+	788.895813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033218, intron 1 of 18)	intron (NM_033218, intron 1 of 18)	4911.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	4.23326970944911	4.06043546634445	3.92870171147041	4.02103683401427	4.49218800986344	4.40658737915756	4.16943148719538	4.58472610121373	0.889418317753573	0.0247056721299448	0.14730482798939
Merged-chr16-16086945-4	chr16	16086849	16087049	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 5 of 18)	intron (NM_001355731, intron 5 of 18)	59902.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	5.33974367048513	5.04077649604713	4.99147665421897	5.37728402478248	5.0021253637784	4.93246346566994	5.44433860724867	5.12631949607443	-0.13110573344441	0.685657447357177	0.871538346919012
Merged-chr14-13917862-3	chr14	13917758	13917958	+	946.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43455.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	3.53527767665779	3.88768620860435	3.75344873877162	3.79882667140532	3.85322364555573	3.64998133592633	3.63493948076617	3.70016076897909	-0.109279117775986	0.815789321040985	0.929019936613431
Merged-chr1-51517606-3	chr1	51517557	51517757	+	765.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	-39258.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	3.42375968011314	3.42947356942008	3.42423445075162	3.73230849503378	3.39323951018906	3.02169305219671	3.18321836095539	3.12777110668176	-1.16599064234975	0.0434558111453689	0.212131565735569
Merged-chr3-103207652-4	chr3	103207548	103207748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35993.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	6.81053025124504	6.72834161260324	6.75590076351737	6.66965236667957	6.81385379284737	6.62823483923926	7.02298300477605	6.31181955368722	-0.0180145395164049	0.936747842494037	0.977098357477254
Merged-chr16-30633458-3	chr16	30633361	30633561	+	586.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	33738.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	3.34294029676824	3.56022883900702	3.34335596854049	3.30710755348094	3.38763616518274	3.92564242936991	3.39058511075824	3.45899152293526	0.548595808461102	0.295525503090253	0.607479994930579
Merged-chr9-37348368-4	chr9	37348241	37348441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081429)	promoter-TSS (NM_001081429)	51.0	NM_001081429	245902.0	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	7.37216185023378	7.49974053461061	7.54777283868818	7.895383833755	7.62926926600607	7.53959044088893	7.71863383492855	7.67999984367488	0.046052465189791	0.811133852291937	0.926883359837906
Merged-chr11-72813103-2	chr11	72813003	72813203	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045536, intron 1 of 54)	intron (NM_001045536, intron 1 of 54)	16877.0	NM_001045536	195018.0	Mm.272030	NM_001045536	ENSMUSG00000055670	Zzef1	8430405D05Rik|BC051585|C130099L13Rik|C85424|NSPA|mKIAA0399	zinc finger, ZZ-type with EF hand domain 1	protein-coding	3.14455071839357	3.15488634379842	3.14490708567438	3.5309487802577	3.29091349417893	3.43407079107987	3.25341064299464	3.26376844348443	0.139928453132773	0.803444836546569	0.924122552203287
Merged-chr4-148625889-3	chr4	148625789	148625989	+	932.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003898, intron 1 of 6)	intron (NM_001003898, intron 1 of 6)	1107.0	NR_027864	230908.0	Mm.22453	NM_145556	ENSMUSG00000041459	Tardbp	1190002A23Rik|C85084|TDP-43|Tdp43	TAR DNA binding protein	protein-coding	3.76637459975977	3.62389026141836	3.95518164672084	3.66836140850245	4.0203152392551	3.46705721450791	3.75136127723735	3.71305725464324	0.0332221860573126	0.945597628892618	0.980594795823631
Merged-chr2-155236930-1	chr2	155236830	155237030	+	1000.0	f1_c57bl6.idr	exon (NM_001291108, exon 1 of 4)	exon (NM_001291108, exon 1 of 4)	322.0	NM_001291108	67068.0	Mm.23693	NM_025947	ENSMUSG00000047459	Dynlrb1	2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1	dynein light chain roadblock-type 1	protein-coding	4.14404017701942	3.89177334020471	3.83133767615604	3.75281812904555	3.77445990035813	3.78779672992967	3.65548619193637	3.87885026228363	-0.370252450299931	0.41786725202816	0.711529906035893
Merged-chr17-91390430-3	chr17	91390328	91390528	+	669.311096	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-297626.0	NM_020252	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	3.48232457203748	3.36893886728555	3.23635123034431	2.96185252367801	2.84488489497613	2.97008328109244	2.85216904548126	2.99633887298139	-1.50924648040123	0.017156554801516	0.115304165255132
Merged-chr3-81126893-4	chr3	81126798	81126998	+	956.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	90482.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	5.03651060179083	4.71324685687465	5.28288638493149	5.59217774005165	4.80047684703195	5.03273033608462	5.07823500509378	4.77217688286575	-0.557087044745295	0.125744940617935	0.393815330829051
Merged-chr8-72539467-3	chr8	72539356	72539556	+	748.455566	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027485, intron 1 of 2)	B3A|SINE|B2	8854.0	NM_027485	70625.0	Mm.235885	NM_027485	ENSMUSG00000045248	Med26	5730493L18Rik|AI414941|AW495270|Crsp7	mediator complex subunit 26	protein-coding	3.32582844127192	3.83139774144846	3.25985115420555	3.04738751069385	3.82318401163414	3.73604160111761	3.6011123370039	3.61428516040744	0.964893502372875	0.0817670814247657	0.310355627831995
Merged-chr11-115165140-4	chr11	115165040	115165240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	1799.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	5.82416602362601	5.40451411183618	5.4994133443637	5.03850367290039	5.27114063181668	5.44260780140782	5.47158319395844	5.05559702068157	-0.242928832735874	0.458531600707709	0.741437053590115
Merged-chr5-105652084-3	chr5	105651991	105652191	+	899.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47878.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	5.2007410698189	4.30698770441125	4.66024407738614	4.91813434783915	3.74973146196204	3.61240900416915	3.62223763201368	3.63335449849834	-3.16812982739183	3.10696461893885e-09	1.82166914836448e-07
Merged-chr5-100585238-4	chr5	100585147	100585347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	-13042.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	5.85404389449518	5.40745156404296	5.43290711101238	5.784341185973	5.38039342665196	5.31605491999398	5.37622872546044	5.76367895409408	-0.296064101017836	0.314928770251695	0.62687197454474
Merged-chr10-95941949-4	chr10	95941829	95942029	+	981.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001932, intron 1 of 28)	intron (NM_001001932, intron 1 of 28)	1266.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	5.26820826640936	4.99896106718373	4.7630138050613	5.49424513865568	5.03863033040193	4.85716170098223	4.96601510599247	4.71796982409904	-0.526895121879206	0.134663422040715	0.408506749599654
Merged-chr17-17608799-2	chr17	17608698	17608898	+	764.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	15691.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	2.92671841201329	3.00796538712162	2.92702926742298	2.93841451034894	3.18145267570228	3.2853320470572	3.10412274445443	3.27868021388925	1.05147947896562	0.0587961311676334	0.255279359545015
Merged-chr5-135466082-4	chr5	135465982	135466182	+	974.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-71536.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	5.48507540612087	5.15089391772676	5.70619016522664	6.07750543220637	5.05992322362126	5.06642923653632	4.81708995048395	5.39934834491646	-1.00413323769348	0.00416863823727807	0.0413972105103422
Merged-chr7-3643631-4	chr7	3643546	3643746	+	866.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1623.0	NM_146176	232791.0	Mm.358731	NM_146176	ENSMUSG00000035632	Cnot3	A930039N10Rik	CCR4-NOT transcription complex, subunit 3	protein-coding	4.35480890540038	4.41713203104473	4.76294173529003	4.64569992571383	4.62808199878662	4.66581578711584	4.51362245879598	4.75973611267461	0.179555605503783	0.617845235530323	0.835731112257238
Merged-chr5-147408986-2	chr5	147408901	147409101	+	786.766663	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8512.0	NM_010229	14255.0	Mm.194	NM_010229	ENSMUSG00000042817	Flt3	B230315G04|CD135|Flk-2|Flk2|Flt-3|Ly72|wmfl	FMS-like tyrosine kinase 3	protein-coding	2.31682752008696	2.18268282137111	2.08278407023104	1.86162665251961	2.65036413011132	2.4955157122373	2.62328973516078	2.4524702639596	3.07671864143167	0.00150072886192059	0.0186814235156778
Merged-chr1-173742467-4	chr1	173742353	173742553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204910)	promoter-TSS (NM_001204910)	-644.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	7.50657872702461	7.12882248162786	6.92677892608136	7.62197690144493	7.21990638306782	7.13231676446664	7.47074945085313	6.98969318602236	-0.162491301743522	0.480419270682843	0.755947743876719
Merged-chr4-133675230-4	chr4	133675189	133675389	+	733.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-2123.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	3.31866056789608	3.55720795905874	3.31909236261868	2.94449710036311	3.55842962181348	3.30904836708703	3.30660188452185	3.482129638814	0.44443695288757	0.43058924464387	0.721139064549168
Merged-chr10-99128018-6	chr10	99127910	99128110	+	895.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 3 of 12)	intron (NR_153333, intron 3 of 12)	19875.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	3.79153037972528	3.81557885183508	3.89012748768367	4.33313424840802	3.49520450869481	3.41976804082647	3.67156378904482	3.839755750297	-1.13045560743388	0.0264851729857561	0.15440097505275
Merged-chr15-66817185-4	chr15	66817070	66817270	+	959.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	14659.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	4.96233402961487	4.83060760810142	5.18023794186102	4.92754042884357	4.95195462165019	5.06660910914506	4.503652014004	4.73880081740988	-0.281307526909385	0.413218745714243	0.708239955240775
Merged-chr6-38381443-4	chr6	38381323	38381523	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153600)	promoter-TSS (NM_153600)	-101.0	NM_153600	264134.0	Mm.253446	NM_153600	ENSMUSG00000056832	Ttc26	9330141E21Rik|9430097H08Rik|Ift56|hop|hpy	tetratricopeptide repeat domain 26	protein-coding	4.56671821587408	4.37328090721134	4.82315226526844	4.75236255018259	4.4586178093104	4.6578254169288	4.66123161510557	4.34463481315262	-0.246664851416982	0.505193725935823	0.771325272809652
Merged-chr6-137411137-2	chr6	137411037	137411237	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 13 of 26)	intron (NM_011216, intron 13 of 26)	416.0	NM_001164403	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	3.36261273551287	3.85600715788522	3.86208322866647	3.32795085228288	3.61219967595398	3.88747970873438	3.75027956874528	3.71371366855047	0.371345353354651	0.46820313509827	0.747560138025118
Merged-chr6-113238663-4	chr6	113238568	113238768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362185, intron 1 of 16)	intron (NM_001362185, intron 1 of 16)	825.0	NR_155433	97287.0	Mm.197816	NM_026849	ENSMUSG00000030269	Mtmr14	1110061O04Rik|AW553738|C76151	myotubularin related protein 14	protein-coding	6.98565934784289	7.45055880363586	7.08237795507482	6.69931982649582	6.90208238606002	6.87260575559568	6.72158441372209	6.55841695713974	-0.421883234274726	0.0764445891967512	0.298674355825862
Merged-chr14-73446140-3	chr14	73446044	73446244	+	977.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60855.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	4.56612962242006	4.36455001115017	4.3717822697302	4.12112255030942	4.42448836764063	4.54296568768233	4.07320443051671	4.08762204501672	-0.124632938622671	0.762936704924228	0.907015239695587
Merged-chr17-56325848-4	chr17	56325720	56325920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357909)	promoter-TSS (NM_001357909)	-230.0	NM_172132	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	9.19121532430115	9.44597558705958	9.51081857009669	9.41662430824807	9.47235079431002	9.48397871503835	9.62631465450158	9.28860013544991	0.09338691408258	0.537245365418855	0.790977285921248
Merged-chr3-55129515-4	chr3	55129425	55129625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001144987, intron 8 of 8)	MER73|LTR|ERVL	-7814.0	NM_001290138	320604.0	Mm.213909	NM_177203	ENSMUSG00000048655	Ccdc169	A730037C10Rik	coiled-coil domain containing 169	protein-coding	7.44846173434538	7.38915374181352	7.65846631669345	7.99198767863801	7.57363220670225	7.73128998293779	7.81364020897217	7.47385641995887	-0.00542161832567536	0.979225000302906	0.992612488024047
Merged-chr13-49243591-4	chr13	49243489	49243689	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028340, intron 1 of 4)	intron (NM_028340, intron 1 of 4)	4705.0	NM_001360772	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	4.91545486189328	5.33893596351025	5.26742040953936	4.91928630751348	5.25414126954583	4.81050294479725	5.03076114166897	4.5320311222523	-0.331102611100153	0.359697008909782	0.665443059431823
Merged-chr19-11808636-4	chr19	11808529	11808729	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	10774.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	5.2713166394759	5.38496522526725	4.97319401963646	5.30297133437883	5.26773404374478	5.11241902998275	5.08998438802272	5.14436520615587	-0.163590917589373	0.587132835784482	0.819073308396926
Merged-chr4-32250453-4	chr4	32250347	32250547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-166988.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	8.05724011445518	8.17661817898558	8.13367749672266	8.15337006023557	7.86138800944142	8.04854854337998	7.8842585951959	7.6177890685538	-0.350521782629393	0.036573141073703	0.190337638163279
Merged-chr10-39770772-3	chr10	39770679	39770879	+	896.4166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011264, intron 1 of 31)	B2_Mm1a|SINE|B2	38619.0	NM_011264	19714.0	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	4.03304934949512	3.45381457180979	3.52178434419408	3.17204252195488	3.75470348186056	3.9264381463112	3.68185862386681	4.2260146919908	0.987163032532784	0.0675703046551727	0.277481492820085
Merged-chr6-108213787-4	chr6	108213680	108213880	+	936.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 1 of 61)	intron (NM_010585, intron 1 of 61)	684.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	4.297713541225	4.07891991615994	3.90622357083669	4.06775492163174	4.43412149611381	4.29101021087043	3.99941038788516	4.52632319805927	0.590829203636592	0.153490191016613	0.438150323094907
Merged-chr10-39443320-4	chr10	39443238	39443438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	MLT1B|LTR|ERVL-MaLR	73539.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	7.0460552220238	7.08220628638098	7.6767497360375	7.59928408167524	7.21452863797737	6.5668401997699	7.42442696247468	7.05482684334997	-0.380268672618341	0.13777346119517	0.412856363171431
Merged-chr11-53737760-4	chr11	53737679	53737879	+	951.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16985.0	NM_010558	16191.0	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	4.61955378543311	4.62579528303961	4.49282950535049	4.48702237306605	4.92182779122875	4.9076036939389	4.55825527909183	4.76945638212306	0.531649688537913	0.122022285352946	0.387171767001176
Merged-chr9-42146603-1	chr9	42146503	42146703	+	550.0	f1_c57bl6.idr	Intergenic	Intergenic	-22306.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	2.87698468949193	2.72237572032454	2.61574086480395	2.6102607072681	2.73325519736169	3.04571701934322	2.80640747498388	2.81523647541073	0.686011932514354	0.276589836283172	0.588579924847301
Merged-chr3-129948609-4	chr3	129948517	129948717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025779, intron 1 of 7)	intron (NM_025779, intron 1 of 7)	21589.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	5.61274715518887	6.06930734315128	5.61372344988725	6.27620926446506	5.58731281221402	5.58504759277757	5.61243231184541	5.73996481369761	-0.51968419024344	0.073948100042922	0.292989246476768
Merged-chr7-101051981-4	chr7	101051836	101052036	+	909.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39883.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	4.2958257650456	4.38734144392568	3.9387460614533	3.45357277627863	3.97620663156265	4.01005464891788	3.87018454747495	4.08229986373138	-0.208291009874851	0.678713446871744	0.868137421912153
Merged-chr8-120739602-4	chr8	120739471	120739671	+	855.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 1 of 8)	intron (NM_001301811, intron 1 of 8)	932.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	3.51751946953712	3.34030811916909	3.34796066383777	3.7306728376572	3.26117336459268	3.39874225841225	3.39449080807016	3.75654989917788	-0.141881847631367	0.792989253862749	0.919802981990661
Merged-chr13-76256597-4	chr13	76256527	76256727	+	990.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-128334.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	6.50121549903677	6.67262238268759	6.37872950853231	6.3780955602981	5.55532276429233	5.65087078160254	5.37207845898538	5.52758890802455	-1.51712326081473	1.62902709849466e-09	1.00740677535839e-07
Merged-chr18-4171889-3	chr18	4171783	4171983	+	830.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026092, intron 3 of 4)	intron (NM_026092, intron 3 of 4)	6051.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	3.70241683724083	3.52159414881691	3.95157031598188	4.22387792432032	3.97322153014744	3.57841282436648	3.68858376934468	3.80604991655263	-0.329688296036835	0.519738092441322	0.780292288327199
Merged-chr6-124637257-4	chr6	124637150	124637350	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1165.0	NM_173864	317677.0	Mm.483270	NM_173864	ENSMUSG00000079343	C1s2	C1sb|EG317677|Gm5077	complement component 1, s subcomponent 2	protein-coding	5.7738212548211	6.53139263775096	6.0830495347971	5.17397261099328	5.82989456567838	6.02369085525794	5.76980587923867	5.52440794950495	-0.289959657729256	0.412513911753363	0.707611223633994
Merged-chr6-17640241-2	chr6	17640141	17640341	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 1 of 9)	ID_B1|SINE|B4	3231.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	2.51962376712642	2.57450393547558	2.36561658729165	2.68837834006106	2.53039791057659	3.06412390506094	2.83074988108349	2.721409160531	1.19364650024239	0.0984973985779322	0.343994301133918
Merged-chr3-87000346-3	chr3	87000287	87000487	+	957.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1047.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	3.53790498698409	3.61639168351689	3.65338650859978	4.17817953001041	3.53299690788906	3.71414793870475	3.88560148966502	3.75693456778709	-0.199915977013983	0.699237446718201	0.87873985942593
Merged-chr2-173021899-4	chr2	173021802	173022002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019547)	promoter-TSS (NM_019547)	0.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	7.20274875537485	7.29382889468541	6.71571382873918	7.08475117283067	7.35211859669929	7.30182950736789	7.18949171068435	6.97193261363512	0.164775914592832	0.436121076070194	0.724990940109308
Merged-chr2-117087717-4	chr2	117087634	117087834	+	965.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33337.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	5.14050461421443	5.51428542205177	5.23590387764507	5.32592173971111	5.21928700100163	5.02767046389283	5.01505415178365	4.96306418213705	-0.460946255509401	0.131570523083546	0.403904809478786
Merged-chr18-23436544-4	chr18	23436445	23436645	+	889.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361217, intron 1 of 20)	intron (NM_001361217, intron 1 of 20)	21136.0	NM_001361217	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	5.19207970132633	5.1671123880518	5.76983488999103	5.98489474499983	4.43321763048233	4.78857903816317	5.06858779613114	4.82513073002717	-1.50619040869659	5.92526553518594e-05	0.00130736043251395
Merged-chr9-119102445-4	chr9	119102365	119102565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177117)	promoter-TSS (NM_177117)	-13.0	NM_177117	320256.0	Mm.110648	NM_177117	ENSMUSG00000038060	Dlec1	D630005C06Rik	deleted in lung and esophageal cancer 1	protein-coding	6.6058406287668	6.83993353279378	6.23009689106254	6.5626226525479	6.93017459454429	7.12376477941472	7.03068819036776	6.90507378692881	0.58701464505375	0.00684237172776942	0.0598909465335587
Merged-chr15-102510799-4	chr15	102510711	102510911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358844)	promoter-TSS (NM_001358844)	-111.0	NM_001358844	26404.0	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	5.84920485236721	5.67701915134456	5.5676429241667	5.58256993370349	5.8009033790437	6.30972131652875	6.10553144173766	5.41153024709402	0.447522859671639	0.12839878101565	0.398678103032322
Merged-chr19-42753395-4	chr19	42753321	42753521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029011)	promoter-TSS (NM_029011)	-646.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	7.5244834623056	7.40579446214547	7.4443677330797	7.48510009591323	7.03511962075887	7.39690143138356	7.14969838728009	7.09757056717981	-0.399772114182046	0.0291456222752734	0.164135894521787
Merged-chr7-142533178-4	chr7	142533161	142533361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011288, intron 1 of 4)	CpG	144.0	NM_011288	19935.0	Mm.12144	NM_011288	ENSMUSG00000037772	Mrpl23	L23mrp|Rpl23|Rpl23l	mitochondrial ribosomal protein L23	protein-coding	5.36891880432665	5.09250336499985	5.3698450845477	5.16369229133346	5.85253286601439	5.77244965769995	5.56914091297414	6.10050964647755	1.01625474897338	0.000276413201331339	0.00474434898904349
Merged-chr7-106215394-4	chr7	106215289	106215489	+	892.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029000).2	promoter-TSS (NM_029000).2	-49.0	NM_029000	74558.0	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	4.8502634552193	4.66969743203463	4.57431513973354	4.5549396374271	5.06502889049604	5.02261161939131	5.21512163700129	4.57151544629407	0.690077617503593	0.0479952455250118	0.226031800423853
Merged-chr3-130690918-4	chr3	130690779	130690979	+	822.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	18565.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	3.28694908590766	3.54127290101519	3.28734777632528	3.32924573747542	3.39499627283638	3.39941991829746	3.44285699933999	3.40086995307275	0.152607139703457	0.764461998975142	0.907688206355961
Merged-chr5-137826587-4	chr5	137826483	137826683	+	868.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153510, intron 4 of 6)	intron (NM_153510, intron 4 of 6)	9695.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	3.89638888894684	4.42284061191127	4.04801492254873	3.64176782874845	4.05892216281328	4.12430338754834	4.28483632682486	3.66266224799444	0.0567612886832519	0.907977955697971	0.965937748978087
Merged-chr6-91473591-4	chr6	91473499	91473699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133928)	promoter-TSS (NM_133928)	-152.0	NM_028766	74122.0	Mm.38801	NM_028766	ENSMUSG00000030095	Tmem43	1200015A22Rik|LUMA	transmembrane protein 43	protein-coding	8.79183286712342	8.79473937892309	8.79726739808199	8.89931572289187	8.76492239354067	8.80571425991573	8.94167407844247	8.85885000154891	0.0231876342270022	0.869597015484423	0.951054729822361
Merged-chr2-16356401-6	chr2	16356281	16356481	+	953.2315060000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026162)	promoter-TSS (NM_026162)	77.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	4.39786084153003	4.47430969619318	5.41522808923991	4.85466735532511	4.27869752291561	4.16139971142157	4.12977463416727	4.39575568910523	-1.35001564770885	0.00221071625174585	0.0252578767388472
Merged-chr13-37958753-4	chr13	37958647	37958847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	35461.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	7.87186908174125	7.70991747077295	7.69975959819394	7.94617337218887	7.43217514337805	7.30328815655801	7.77024997547665	7.35253808926065	-0.44427671772562	0.0186138652850787	0.122055856022719
Merged-chr3-95629958-3	chr3	95629848	95630048	+	829.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001026212, exon 3 of 3)	3' UTR (NM_001026212, exon 3 of 3)	4968.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	3.82717903378101	3.43736498638975	3.82774324117232	3.78778568962748	3.80438469119626	3.73280915495441	3.54275493654794	4.12878691819641	0.261961353185031	0.592483751086064	0.822191283909712
Merged-chr14-21613289-3	chr14	21613176	21613376	+	933.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017479, intron 3 of 16)	intron (NM_017479, intron 3 of 16)	101300.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	4.16189485855147	4.10903432421721	4.33140338827337	4.41346500845683	3.88702627488309	3.92141343120101	4.31116318537792	3.8564227107159	-0.682071849465386	0.114735171904322	0.374723997475348
Merged-chr10-7681107-4	chr10	7681022	7681222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033219)	promoter-TSS (NR_033219)	13.0	NM_001358649	18537.0	Mm.258431	NM_008786	ENSMUSG00000019795	Pcmt1	C79501|PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1	protein-coding	6.35125801029717	6.49769811311205	7.22670718985125	6.51103849203341	6.54855128101432	6.47248613658086	6.46172823342977	6.18722204308769	-0.379975855291428	0.156557385655051	0.442522363336544
Merged-chr2-162932423-4	chr2	162932316	162932516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026499, intron 2 of 5)	intron (NM_026499, intron 2 of 5)	908.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	5.68503384244335	5.46578649962234	6.2148901392019	5.78087276892294	5.63457428029888	5.45134688118076	5.52473057079267	5.70705252863447	-0.374434868356797	0.197371805016199	0.498783203481077
Merged-chr2-49734614-4	chr2	49734515	49734715	+	926.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 15 of 25)	intron (NM_008449, intron 15 of 25)	-53071.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	4.81504875969037	5.02180027936902	4.97122872560513	5.35911781938157	4.94898493865874	5.14716096744549	5.1484845218095	5.52174177646391	0.232933677221911	0.49444770121916	0.765093324458231
Merged-chr9-106308374-4	chr9	106308282	106308482	+	972.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	27321.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	5.05179650629165	5.09534180585931	4.94954020911983	4.62355092243123	5.32841275473267	5.2890602567741	4.7753523300354	4.9099497116538	0.340502160758774	0.327818402435952	0.639176739905458
Merged-chr8-125487205-2	chr8	125487128	125487328	+	786.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 3 of 21)	intron (NM_001357372, intron 3 of 21)	5605.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	3.06537111050008	2.79741736800086	3.06583866268871	2.72244926918014	2.71874626659431	2.74524062998593	2.70114856837286	2.63838084093473	-1.01731581751058	0.123616333940363	0.389983722558397
Merged-chr3-146154050-4	chr3	146153952	146154152	+	981.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	3878.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	6.29545262307132	6.81040181567901	6.13138001788894	5.44747011321737	6.40036059645078	6.0254335897648	5.38695499307212	5.18843963068955	-0.662308575757677	0.276911535807475	0.588964507477447
Merged-chr16-36068568-4	chr16	36068481	36068681	+	970.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027342, intron 1 of 4)	intron (NM_027342, intron 1 of 4)	2934.0	NM_027342	70186.0	Mm.212991	NM_027342	ENSMUSG00000003955	Fam162a	2310056P07Rik|HGTD-P	family with sequence similarity 162, member A	protein-coding	4.95215633046121	5.55751699243133	5.68872816225809	5.38271177833145	5.41360186013337	5.09351807943634	5.00610393110222	5.41204160463879	-0.307127878907614	0.346799522336818	0.654961479487711
Merged-chr6-70797965-4	chr6	70797857	70798057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5782.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	4.73631454339743	4.89948052590298	4.91974374708868	4.86547606267098	4.26861317227832	4.74804143397653	5.08331217745701	4.98259351042744	-0.122004100718522	0.744885624585293	0.899379391239594
Merged-chr12-108760744-4	chr12	108760638	108760838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32573.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	6.01550067053189	6.30830940979704	5.520080578146	6.14480451158941	6.05342107567511	6.12593988578819	6.23834310248601	5.92263060385021	0.0761111414306717	0.778687839474267	0.913781420202775
Merged-chr5-122371870-3	chr5	122371767	122371967	+	864.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026883)	promoter-TSS (NM_026883)	96.0	NM_026883	68948.0	Mm.474469	NM_026883	ENSMUSG00000029463	Fam216a	1500011H22Rik	family with sequence similarity 216, member A	protein-coding	3.69821824734618	3.51351228852777	3.80091378516601	3.48468958535483	3.87659076215571	3.87056095323364	3.73525933691463	3.79864754199054	0.62125256022833	0.177153107438893	0.472420088731847
Merged-chr17-71161756-4	chr17	71161635	71161835	+	870.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-21797.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	4.24881261264028	3.86931167198468	4.16504068802991	4.03655712149829	3.98512427788266	3.81633266947085	4.10240045997972	4.2467445282301	-0.0921330875975981	0.830543180491609	0.93499882818844
Merged-chr3-97991632-4	chr3	97991512	97991712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21926.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	5.36935448774189	5.82252278875497	5.92527224185648	5.98700111353254	5.51641255971203	5.48402191859605	5.40501884990164	5.33456901811712	-0.626655945667568	0.0284701547877933	0.161885057328674
Merged-chr5-63886937-3	chr5	63886834	63887034	+	815.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 2 of 3)	intron (NM_029554, intron 2 of 3)	74439.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	3.0923697943018	2.93528531613122	3.20375346393248	3.00146482921152	3.24087009339378	3.01319502982193	2.89718018831436	3.03193831220763	0.00774766888594071	0.989454989031002	0.995744921520196
Merged-chr2-102877695-4	chr2	102877589	102877789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	23976.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	6.14788534887884	6.39730628339727	6.04537012129731	6.40668700301791	5.86868721139313	6.0858229311567	5.92558522466146	6.06245150167441	-0.449089119857489	0.062726997478315	0.265385458482464
Merged-chr12-3350526-4	chr12	3350406	3350606	+	967.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14626.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	4.78445618892786	4.66123899905564	4.52237890549081	4.84472107305344	4.43331090856286	4.31914547288254	4.41644277785785	4.60023755411387	-0.605831402479785	0.0948689909154172	0.337027345995632
Merged-chr7-39448945-1	chr7	39448845	39449045	+	614.0	f0_balb.idr	promoter-TSS (NM_001243021)	promoter-TSS (NM_001243021)	-573.0	NM_001243021	233147.0	Mm.148946	NM_001243021	ENSMUSG00000030424	Zfp939	9430025M13Rik	zinc finger protein 939	protein-coding	2.76197886417483	2.85116624598191	2.81976087310588	2.86778330035879	2.34608966782635	2.53216889995146	2.42387795930269	2.50212548969531	-2.26693208689457	0.00306761421106476	0.0325485382261363
Merged-chr8-79028098-4	chr8	79027995	79028195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178267)	promoter-TSS (NM_178267)	-342.0	NM_001294279	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	5.88589853079175	5.60854378877869	5.86458531002146	6.319372079826	5.84743460587125	5.58753251155235	5.47393872630346	5.55613214056803	-0.541475595119714	0.0656931942681075	0.272885103708415
Merged-chr19-9953005-4	chr19	9952901	9953101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27599.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	5.33929739987528	5.09430476371931	5.37026575032797	4.99973450193104	5.84394610400695	5.54528133295534	5.42889283518029	5.58402258044696	0.755943356194576	0.00967678009101529	0.0771141435398989
Merged-chr8-84066649-4	chr8	84066575	84066775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009055)	promoter-TSS (NM_009055)	-161.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	9.07819634143963	9.5065845687728	9.33905712868927	9.16130832824243	9.19908129533621	9.45107856934176	9.30702390665827	9.14066465507306	-0.00348785739797728	0.982892373544332	0.993870423643528
Merged-chr4-117190109-4	chr4	117190111	117190311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7587.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	5.47007735958604	6.19891698229692	6.40853910555918	5.98425555983158	5.4908250191073	5.61996005408976	5.95305339419898	5.64347975381011	-0.603572859428747	0.0461588844854526	0.220613487192687
Merged-chr17-55952632-4	chr17	55952517	55952717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015766)	promoter-TSS (NM_015766)	-6.0	NM_015766	50498.0	Mm.256798	NM_015766	ENSMUSG00000003206	Ebi3	EBI-3|IL-27	Epstein-Barr virus induced gene 3	protein-coding	7.44935334473057	7.65267423156867	7.13052352230343	6.83272484061876	7.53658651346114	7.58948483049845	7.51288973773939	7.30623911258253	0.26200152711706	0.252955153903466	0.564210795302545
Merged-chr6-30616838-4	chr6	30616752	30616952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144537, intron 4 of 11)	intron (NM_144537, intron 4 of 11)	5842.0	NM_144537	74649.0	Mm.159276	NM_144537	ENSMUSG00000029788	Cpa5	4930430M09Rik	carboxypeptidase A5	protein-coding	6.35658713697933	6.46545363605772	6.4752789178422	6.33725988529775	6.50762070601853	5.82653606829629	6.17651984210927	6.10067028555184	-0.320333423893891	0.197483057657351	0.498889061237808
Merged-chr10-95894992-3	chr10	95894910	95895110	+	684.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45653.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	3.12921799695821	2.97191023958496	3.18604491246973	3.14737041842155	3.1346486372884	2.98187161310831	3.11800992249077	3.12799571392272	-0.070186744876182	0.900613383785492	0.963161804192488
Merged-chr1-5019415-4	chr1	5019310	5019510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290372)	promoter-TSS (NM_001290372)	129.0	NM_021374	58175.0	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	6.09975246592607	5.97803763181356	6.05839256118694	6.53225443991948	6.13733054240463	5.94804489467146	6.41230297899354	6.05406953107856	-0.0844590020382323	0.749676769712079	0.901415182376325
Merged-chr11-34066819-4	chr11	34066716	34066916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 3 of 20)	ORR1F|LTR|ERVL-MaLR	19888.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	5.02962465880775	4.83737309075584	5.16186927415099	5.44617477738311	4.93872983274726	5.0221804524625	4.97139376905591	5.33261461892322	-0.160295751625989	0.634932496448137	0.845499285207272
Merged-chr9-120582770-4	chr9	120582684	120582884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5453.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	5.94571160257978	6.01392415727433	5.39223520409284	5.81993054500604	6.16729168258137	6.4881182366093	5.93851094645893	6.02943954292296	0.554107900313803	0.0430307583385422	0.211034090773203
Merged-chr2-124612019-2	chr2	124611919	124612119	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	1723.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	3.7533647097439	3.41509094770088	3.89841228275197	3.93702510770526	3.75697797694974	3.30443547197467	4.04899973860493	3.69977386768885	-0.116436829116678	0.827834838367254	0.933911212004483
Merged-chr11-61469046-4	chr11	61468939	61469139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15047.0	NM_001291024	22671.0	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	5.84391973209661	5.63506424149048	6.00109283013133	6.25674110621713	5.89141276372434	5.97235990504167	5.55422383633927	5.97566643795523	-0.178203182054423	0.52289719053299	0.782230283620515
Merged-chr5-118560854-4	chr5	118560782	118560982	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 1 of 30)	CpG-11438	163.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	5.54988560056528	5.33539518003715	5.39502418500807	5.36815198470973	5.30055462610464	5.07265273515631	5.0228063190599	5.11424018457888	-0.489219937844854	0.096687878702369	0.340599154615259
Merged-chr10-80398940-4	chr10	80398857	80399057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306143, intron 1 of 6)	CpG	574.0	NM_013595	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	7.97878237241072	8.28599527474167	7.86374359106397	7.87921905450214	8.10109398262547	8.20536787790052	8.0352565811456	8.11263889991539	0.131333731098128	0.449987958214649	0.734979987557322
Merged-chr12-51706991-3	chr12	51706892	51707092	+	906.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-15078.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	3.97560752425268	3.82191877396105	3.9239506099694	4.21480330744246	3.78590924145571	3.93561320236723	4.1474915563406	4.66575489664844	0.449219692785341	0.351508563760666	0.658893189148013
Merged-chr7-110097347-4	chr7	110097152	110097352	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24807.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	4.73343487508074	4.24908988677885	4.59387114901149	4.80729357871258	4.33340028466997	3.92332540715528	4.41553408110651	4.34602396754916	-0.805969742466516	0.051285135633153	0.235071458928189
Merged-chr17-34305802-4	chr17	34305692	34305892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010382)	promoter-TSS (NM_010382)	-75.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	6.77959152271943	6.93113747514661	6.08168690927843	6.32484364743539	7.65066585240959	7.3533177203785	7.29344268743002	7.56211472159147	1.2487501979959	3.46511640537268e-07	1.32675374189361e-05
Merged-chr4-53210875-1	chr4	53210775	53210975	+	796.0	f0_balb.idr	Intergenic	Intergenic	-35321.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	3.63768302626504	3.30854776799833	3.42556703831594	3.90752454672864	3.37735445281319	3.13433414382819	3.52209262073803	3.63604711177333	-0.562094482612069	0.320307234373398	0.632150741292745
Merged-chr1-13386170-2	chr1	13386070	13386270	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12087.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	2.92407445003437	2.7644855218577	2.80585023153828	2.78846898369903	2.3896603504763	2.84979379547587	2.85541491793155	2.74090298847089	-0.490193424436239	0.476194852963504	0.752764962035338
Merged-chr11-114908239-4	chr11	114908149	114908349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	18208.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	6.51571601669076	6.04409738807517	6.77626560809466	6.24857902077161	6.54510585288824	6.06681355459385	6.43472249574087	6.57465219001199	0.0160683866112457	0.951049239222234	0.982556219406068
Merged-chr11-70874319-4	chr11	70874211	70874411	+	934.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291143, intron 2 of 18)	intron (NM_001291143, intron 2 of 18)	29550.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	5.52135057431547	5.02655765866413	4.67837937752964	5.1200740602133	5.23096084767057	4.85845007594724	4.93254929406047	4.76093829433763	-0.29119468474388	0.419370763981644	0.712515966395674
Merged-chr5-66075244-4	chr5	66075160	66075360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	B3|SINE|B2	22919.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	6.37136687859606	6.23522311335704	6.63183770852863	6.08975851498831	5.89803021970164	6.404292859221	5.89955576742077	5.87651433603422	-0.465640268583699	0.0795973072211242	0.305558015893237
Merged-chr12-84846813-4	chr12	84846713	84846913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 3 of 34)	intron (NM_013589, intron 3 of 34)	-28989.0	NR_028577	100303738.0	Mm.479389	NR_028577	ENSMUSG00000092130	D030025P21Rik	-	RIKEN cDNA D030025P21 gene	ncRNA	5.76436216781459	6.29887160872123	6.35839544558328	5.91713119840554	5.78708645924813	5.75406439135344	5.68487231111503	5.44859286639293	-0.681272158037672	0.0144146174167292	0.101969593828798
Merged-chr15-78877326-5	chr15	78877238	78877438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145929, exon 1 of 17)	5' UTR (NM_145929, exon 1 of 17)	148.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	7.07982804161711	7.16366434625382	6.98483120028704	6.69401732698025	6.76738634538141	7.05733723398369	6.81834691584608	6.99233198930975	-0.100628565243064	0.637120520988575	0.846608339576867
Merged-chr13-6647357-4	chr13	6647248	6647448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019703, intron 1 of 21)	intron (NM_019703, intron 1 of 21)	1423.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	5.19734711427413	5.02018442907277	5.40368434059396	5.12007222606966	5.35205021688449	5.20455598028259	5.32160526180861	5.22610415921411	0.181301246428118	0.537983833362015	0.79126455418755
Merged-chr4-148041593-2	chr4	148041493	148041693	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001161798, exon 2 of 12)	exon (NM_001161798, exon 2 of 12)	404.0	NM_001161798	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	3.74345917491793	3.76963705136301	3.89001041450307	3.31998299331821	3.77394197415634	3.57444143435422	3.56584866404955	4.05894668904758	0.216957072835566	0.672026476566979	0.864997909291221
Merged-chr4-132514931-4	chr4	132514837	132515037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4481.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	5.13991062134458	5.10359523285552	4.96478202268649	4.82655752743035	5.23373798613438	5.52419461908764	5.23974303657896	5.40301136076467	0.652100120874224	0.0307216353929519	0.169986818695477
Merged-chr10-93261309-4	chr10	93261216	93261416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	49843.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	7.15847434444271	6.84560385081906	7.58165362636893	7.45713905141307	6.326610345479	6.54552718904886	6.81700697524731	6.80451116139763	-0.921184674826893	0.000162473285067826	0.00305539919625965
Merged-chr17-22424863-3	chr17	22424759	22424959	+	729.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331197, intron 1 of 5)	RLTR9E|LTR|ERVK	657.0	NM_001331198	74149.0	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	3.93518637762231	3.73354512437679	3.46686669348483	3.81282454962448	3.72567582886056	3.70314453441389	3.7327389873429	3.64083472424248	-0.151230941491152	0.748726293333166	0.901063036615673
Merged-chr3-79153133-4	chr3	79153054	79153254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7279.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	7.89537287400642	8.32300625335658	8.11050743924968	7.80812489116606	7.79000411591712	8.13122957708086	7.8142238579283	7.67732903584018	-0.238546718316481	0.224770375718067	0.53323724482868
Merged-chr5-31095515-4	chr5	31095407	31095607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347323, intron 1 of 8)	CpG	-1980.0	NM_011773	22784.0	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	8.46657670564165	8.69500964334562	8.43797470897095	8.26548052264491	8.3480736255773	8.28815203432516	8.36814725455242	8.05821869912855	-0.251611421121127	0.144748884004498	0.423930146704668
Merged-chr19-40818910-4	chr19	40818805	40819005	+	909.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12374.0	NM_172839	240665.0	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	4.71421829093687	4.90011375528256	5.04288727746216	5.29657821003918	4.70824776534708	4.71844524392071	4.77294404235366	5.21840671867252	-0.304474008249307	0.396832962047235	0.695444489993109
Merged-chr10-50702538-4	chr10	50702423	50702623	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 16 of 41)	MTD|LTR|ERVL-MaLR	109854.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	4.70360069083127	4.89636537221908	5.16138907285041	5.28635569932033	5.1486272873423	5.23681996807566	5.65014073990286	5.15783347135292	0.48940681548743	0.149529017440036	0.431777928290641
Merged-chr2-146948679-3	chr2	146948591	146948791	+	877.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033298, intron 9 of 13)	intron (NM_001033298, intron 9 of 13)	-64308.0	NM_001356403	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	3.72289701923431	3.82727166287429	3.95965099788399	4.39480199823925	3.23831062129084	3.34254271931197	3.35770274656847	3.61333618734389	-2.04525877151625	0.000232103878800762	0.00410866003212121
Merged-chr9-40350884-3	chr9	40350793	40350993	+	779.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	-4648.0	NM_001357619	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	4.64647671843583	3.857576720181	4.15925173309224	4.13767697371941	3.8187102704053	4.28639815100071	3.83566354582497	4.2016117717097	-0.459389089327097	0.327456926996043	0.638965891721937
Merged-chr11-97241459-4	chr11	97241340	97241540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008942, intron 8 of 22)	intron (NM_008942, intron 8 of 22)	39136.0	NM_008942	19155.0	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	6.78135721393773	6.41247972528871	6.1349960154399	6.66247694248913	6.18570513132805	6.08300704305831	6.26174641952297	5.92434060934604	-0.607371620452149	0.0151524920493122	0.105625230788169
Merged-chr11-55158994-4	chr11	55158904	55159104	+	858.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153170, exon 10 of 10)	3' UTR (NM_153170, exon 10 of 10)	-7298.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	4.29696624595021	4.36722247363767	4.20703440306121	4.06677720061592	4.10296281772117	4.55232066278515	4.09239737338122	4.45860143943654	0.194112752604301	0.634964867316972	0.845499285207272
Merged-chr12-111843670-4	chr12	111843553	111843753	+	803.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011625, exon 7 of 17)	exon (NM_011625, exon 7 of 17)	29483.0	NM_026752	68520.0	Mm.390497	NM_026752	ENSMUSG00000021286	Zfyve21	1110013H04Rik|AW558780|C85416	zinc finger, FYVE domain containing 21	protein-coding	3.889378305362	3.33971761981213	3.88996496575811	3.82786642922546	3.79151756902021	3.62478087669612	3.82540105738761	4.06351922011315	0.230147453318476	0.641951698468869	0.848942478175454
Merged-chr5-148503606-3	chr5	148503455	148503655	+	782.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48118.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	3.74099469147019	3.71054579087603	3.47843020313917	3.53096802605787	3.17256439183679	3.65271578733313	3.72508768954359	3.53357424007992	-0.278584958216117	0.593918207311165	0.823213913076186
Merged-chr1-92975336-3	chr1	92975233	92975433	+	880.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271766)	promoter-TSS (NM_001271766)	-14.0	NM_001271766	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	3.47730307671963	4.00363997048025	3.79759466056858	3.94669014335686	3.37807604510847	3.53089157228284	3.52360827430056	3.53496403135809	-1.09042973431049	0.0309724850712455	0.17092541048442
Merged-chr15-94683882-4	chr15	94683784	94683984	+	937.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178789, intron 2 of 7)	intron (NM_178789, intron 2 of 7)	54699.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	4.0965478359395	4.2325715615584	3.86863213819163	4.35588457871409	4.47137922463821	4.81358267120663	4.35995051182592	4.45912198057961	0.856905526280632	0.0390925968757699	0.198769337311267
Merged-chr7-127208979-4	chr7	127208886	127209086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144522)	promoter-TSS (NM_144522)	87.0	NM_001347655	17907.0	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	9.03827915533038	9.25777536472665	9.0046957856542	8.88731919891533	9.031893592741	9.33319388786632	8.96473859089981	8.91478149142282	0.0226271505454572	0.892257595997359	0.959628855154721
Merged-chr4-45520601-4	chr4	45520503	45520703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	10225.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	6.33063652336857	6.12546772344975	6.08601083975926	6.05316978714773	6.05773654560184	6.28197533468599	5.80305656194238	6.16247060486769	-0.0947657739043403	0.696796748559141	0.877424473086563
Merged-chr12-99979718-4	chr12	99979603	99979803	+	974.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	Lx7|LINE|L1	15204.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	6.27872318540023	6.04893756115761	6.16378520739305	6.66040874886647	5.97611045369928	5.52954214504093	6.66534497413816	6.38149337400876	-0.168799971507069	0.592886751410785	0.822423445862576
Merged-chr8-117109977-2	chr8	117109877	117110077	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021486, intron 4 of 10)	intron (NM_021486, intron 4 of 10)	14112.0	NM_001163028	63857.0	Mm.174133	NM_021486	ENSMUSG00000031845	Bco1	Bcdo|Bcdo1|Bcmo1|CMO1|Cmoi|beta-CD|betaCMOOX	beta-carotene oxygenase 1	protein-coding	3.08636814070987	3.32977733486882	3.1440269804233	2.91396510262221	3.03208967149083	3.07312980731202	3.01607671439149	2.75484981012601	-0.606710005728182	0.32307398063071	0.634549747994296
Merged-chr9-88481895-4	chr9	88481767	88481967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284328, intron 1 of 11)	CpG	530.0	NM_001311113	56403.0	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	5.93875983890081	6.05986699505161	6.26036936131678	5.87359834503533	5.85749554227756	5.86688322405963	6.17433943558717	6.0858369749123	-0.0487746212951337	0.845653642692087	0.941557049643182
Merged-chr3-65442459-3	chr3	65442339	65442539	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49886.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	3.61097249220349	3.53629450789241	3.82408825991803	3.67374521861997	3.77544986298391	3.7864705076078	4.06894999638252	3.77192369331077	0.563351015209827	0.219383625053741	0.526927857185768
Merged-chr8-11767632-4	chr8	11767529	11767729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017402, intron 1 of 19)	RMER15|LTR|ERVL	9299.0	NM_001113518	54126.0	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	5.9488214559082	6.01658096741744	5.92724744352792	5.85423862693994	5.84656144461225	6.05662631070768	5.9633381978947	6.24341190407687	0.150882704675054	0.536419540021	0.790399040287221
Merged-chr1-191334672-4	chr1	191334564	191334764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025864, intron 2 of 7)	MTEa|LTR|ERVL-MaLR	8699.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	7.73198513062443	7.82713854568988	7.64144552804823	7.86853628225364	7.82331274352039	7.79243599855457	7.71953613904918	7.77545404972389	0.00297250208548663	0.985545514895632	0.994684781350673
Merged-chr7-126565827-3	chr7	126565727	126565927	+	735.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146200, intron 2 of 20)	intron (NM_146200, intron 2 of 20)	539.0	NM_146200	56347.0	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	3.4953349704895	4.30593814854287	3.42657972252729	3.54768454116095	3.97126962475092	4.299620371433	4.11104865410634	3.79565977417915	0.833220275366646	0.122256454279253	0.38741395063409
Merged-chr14-7958794-4	chr14	7958697	7958897	+	942.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35385.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	4.86274579451247	4.89095272522427	4.38044560834549	4.01887838633991	5.02851211284607	4.89525352687614	4.8058207054526	4.27683207985031	0.425051152845409	0.332833777204973	0.643767713157944
Merged-chr1-86441583-4	chr1	86441493	86441693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	15264.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	5.66498556637365	5.96101134211828	5.66597728653207	5.55395445408644	6.12040086455519	6.64279741257695	5.84270709412867	6.25585359090294	0.830211795811489	0.00285686259690333	0.0307870738508679
Merged-chr12-85593200-4	chr12	85593103	85593303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-5902.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	6.66840151332941	6.87326930531373	6.27765084816809	6.59505157081849	6.82810029796645	6.83078171354883	6.76579613210087	6.96309654518805	0.318950130545303	0.142435445442786	0.420018749323558
Merged-chr5-30960330-4	chr5	30960241	30960441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016703)	promoter-TSS (NM_016703)	-14.0	NM_016703	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	7.47098568850916	7.32397971300449	6.96625318856402	7.33889701691427	7.56493048563084	7.62092771890043	7.82168390713384	7.86137332442897	0.569066799876628	0.00319477045893103	0.0335151903457998
Merged-chr9-80068945-4	chr9	80068825	80069025	+	841.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311110, intron 1 of 23)	intron (NM_001311110, intron 1 of 23)	2022.0	NM_146003	215351.0	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	3.79553497320986	4.1240354341562	4.12366300853938	4.41702362021012	4.41961747984866	4.38784634837429	4.15310822268898	4.25849107620362	0.386506205914778	0.371159745864122	0.675213976711571
Merged-chr11-81973834-4	chr11	81973731	81973931	+	987.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5435.0	NM_001034013	11418.0	Mm.234998	NM_007384	ENSMUSG00000020704	Asic2	ACIC2|Accn1|BNC1|BNaC1|BNaC1a|Mdeg	acid-sensing (proton-gated) ion channel 2	protein-coding	5.03277046880658	6.10628331895927	5.50673494469301	5.32099033191515	5.70065932520108	5.81561584452598	5.3300555116757	5.80368858181	0.204024362627601	0.552053702925372	0.799304947428348
Merged-chr14-55918844-4	chr14	55918751	55918951	+	805.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18619.0	NM_001082975	654795.0	Mm.486218	NM_001082975	ENSMUSG00000022223	Sdr39u1	2310014G06Rik	short chain dehydrogenase/reductase family 39U, member 1	protein-coding	4.03952025421371	4.00561697865473	3.82892853360191	4.0957799057498	4.3449117181695	3.82969259471439	3.9738221867563	4.51783602262835	0.511385947640854	0.253936274951543	0.565232047724648
Merged-chr5-92503550-4	chr5	92503427	92503627	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	2130.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	4.92200962347145	4.82951408525757	4.99207195788657	5.2868112085516	5.1581693281587	4.824251080643	4.70957558864715	4.88348763144004	-0.235115569577117	0.495147999100417	0.765544537729018
Merged-chr11-95844190-4	chr11	95844105	95844305	+	881.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023121, intron 2 of 3)	B3|SINE|B2	960.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	4.07820285332018	4.07293157156645	3.93075513878105	4.04476527849051	4.13191789351547	4.05246567475513	4.23322865236493	3.97971576411302	0.184575475238107	0.651832312637229	0.854206632916705
Merged-chr16-36936044-4	chr16	36935918	36936118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008225, intron 1 of 13)	intron (NM_008225, intron 1 of 13)	1035.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	7.24647543548405	6.98799253253515	6.75156572373012	6.95566630368741	6.86397036291283	7.11200445787716	7.20119791150219	6.83480694465874	0.0175561038947587	0.933730760558767	0.976129648653029
Merged-chr11-83385674-4	chr11	83385563	83385763	+	856.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027915, intron 17 of 20)	intron (NM_027915, intron 17 of 20)	-23474.0	NM_001361566	276952.0	Mm.66275	NM_001013386	ENSMUSG00000020684	Rasl10b	B230331P10Rik|Gm729|VTS58635	RAS-like, family 10, member B	protein-coding	4.1208401123477	4.2065160601752	4.35226474574984	4.90840256927391	3.91581063381821	4.19555291383981	4.28986586172188	4.30657176801643	-0.665183155730812	0.141854817810075	0.419040693203243
Merged-chr6-121215207-4	chr6	121215104	121215304	+	934.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017379, intron 1 of 4)	intron (NM_017379, intron 1 of 4)	4470.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	5.05474203121501	4.90926367784599	4.81474058205963	5.33573586108782	4.67093420813013	4.60265271914701	4.67418890396286	5.02043703352416	-0.626818637778272	0.075543014040963	0.296879206957912
Merged-chr3-97158116-4	chr3	97158070	97158270	+	864.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019800)	promoter-TSS (NM_019800)	-607.0	NM_019800	66659.0	Mm.101368	NM_019800	ENSMUSG00000028093	Acp6	5730559A09Rik|ACPL1|AU022842|mPACPL1	acid phosphatase 6, lysophosphatidic	protein-coding	3.79853562994816	3.86196541349367	4.11807341442613	3.240953556895	3.92302426223864	3.92119246901492	3.67665036100624	3.79685160852332	0.13945567046957	0.789727395910551	0.91858689272669
Merged-chr7-29238261-4	chr7	29238177	29238377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110201)	promoter-TSS (NM_001110201)	-46.0	NM_001110201	77254.0	Mm.36699	NM_029887	ENSMUSG00000030588	Yif1b	9430029K10Rik|Yip1b	Yip1 interacting factor homolog B (S. cerevisiae)	protein-coding	8.54439083425968	8.81103982600633	8.16131985852578	8.40141097037116	8.1854483268943	8.2749562474566	8.0717734953346	8.00316935414725	-0.461582445326597	0.0140576698903783	0.100291759559711
Merged-chr14-73241495-1	chr14	73241395	73241595	+	564.5	f0_balb.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	3604.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	3.48525478388781	3.29942394009415	3.43723964806432	3.08356571064421	3.12406488507457	3.14344591421484	3.02366179629419	3.16028351366046	-0.819842586192716	0.152788667238896	0.437201978379924
Merged-chr13-64370384-4	chr13	64370311	64370511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009984, exon 1 of 8)	5' UTR (NM_009984, exon 1 of 8)	109.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	8.3045383474411	8.54771014255339	8.30588038298598	8.57045227150465	8.61702460330221	8.6189264012757	8.64722109826188	8.19320752693178	0.113388406997573	0.51884987853876	0.779745431679921
Merged-chr4-105204385-4	chr4	105204298	105204498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 2 of 5)	MIRc|SINE|MIR	47051.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	5.34909502908782	5.38112843878495	6.04833960339846	5.94787124513871	5.68056527343857	5.42801844424887	5.85486047025324	5.98527301629671	0.0396568908998698	0.898920114919615	0.962371549797902
Merged-chr3-31403215-3	chr3	31403090	31403290	+	935.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92871.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	3.83077980772469	3.43245238455075	4.01737322569522	4.65278937111989	3.60886337213839	3.61002222105632	3.5407563809607	3.42312639435705	-1.5391317961421	0.0075476843911429	0.0644168617838322
Merged-chr12-32339965-4	chr12	32339877	32340077	+	976.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-38812.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	4.29326073918094	3.75224272312245	4.29392956013589	4.27347327638277	4.64022910363467	4.17977586493394	4.51047019531007	4.15311334625538	0.531961907248667	0.221120325686422	0.529183160605114
Merged-chr6-149132527-4	chr6	149132435	149132635	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8978.0	NM_001252096	320204.0	Mm.274099	NM_177101	ENSMUSG00000039958	Etfbkmt	4833442J19Rik|AI256744|ETFB-KMT|Mettl20	electron transfer flavoprotein beta subunit lysine methyltransferase	protein-coding	4.46052105412475	4.56435434603781	4.26921036591409	4.80234263067991	5.03421333680901	4.3981292670896	4.82069659168953	4.58575660109639	0.400155654737325	0.311540678811841	0.623598255825311
Merged-chr4-136897362-3	chr4	136897288	136897488	+	931.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007572, intron 2 of 2)	MIRc|SINE|MIR	1456.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	3.70225902553645	3.4101145905524	3.75407174656944	3.07776419914165	3.76254033110477	3.97431945769996	3.83334435317455	3.70060323819857	0.988438867126004	0.0606946150235955	0.260319879998014
Merged-chr7-25238207-10	chr7	25238100	25238300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001031667)	promoter-TSS (NM_001031667)	-349.0	NM_001031667	606496.0	Mm.491101	NM_001031667	ENSMUSG00000057177	Gsk3a	2700086H06Rik	glycogen synthase kinase 3 alpha	protein-coding	6.59573740453332	6.84641153550715	6.16805874033694	6.40511930506524	6.9080811690206	7.38858374036149	7.09302445399165	6.99875888811989	0.813056385241249	0.000580693448664715	0.00870722118864667
Merged-chr1-144244372-3	chr1	144244318	144244518	+	977.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_015811)	TTS (NM_015811)	4686.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	4.57218989280207	4.26973923847093	4.19554839735091	3.95975890250899	3.90236815514753	3.90701313849936	3.8845368675814	4.14815662198359	-0.769214063069731	0.0849199933813288	0.317031375689164
Merged-chr14-31410397-4	chr14	31410286	31410486	+	913.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	7291.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	4.26571527085703	4.60122233296942	4.59439159054376	4.8630925669714	4.23072117147632	4.07590496575435	4.33699095285645	3.94917083187685	-1.07801903832933	0.00961313281090111	0.0767530207904801
Merged-chr14-54227052-4	chr14	54226969	54227169	+	919.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26860.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	4.49458534532913	4.58624565821679	4.31046838389789	4.7125070846362	4.92703124368585	4.4393154484296	4.70807917525684	4.61540892739419	0.31761839287374	0.394450649271289	0.693617519139457
Merged-chr1-72226377-3	chr1	72226313	72226513	+	932.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	U2|snRNA|snRNA	-14099.0	NM_001357488	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	4.18037136746554	4.26538956117804	4.2682997701875	3.90769311227812	4.38749319047834	3.94035848581769	4.28988696857673	3.98406069507967	0.0581109269737113	0.892839064102963	0.959903811494197
Merged-chr6-17281202-4	chr6	17281101	17281301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277756)	promoter-TSS (NM_001277756)	16.0	NM_016900	12390.0	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	5.49306614982225	5.31439259579042	5.5995719363992	5.69485803456171	5.44318595648973	5.42909864551473	5.43889405706461	5.46237126892197	-0.175675570087266	0.525765682362366	0.783367294725902
Merged-chr13-46975152-3	chr13	46975044	46975244	+	890.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12B|LTR|ERVK	39706.0	NM_175340	105193.0	Mm.25593	NM_175340	ENSMUSG00000044231	Nhlrc1	AI505271|B230309E09Rik|EPM2B	NHL repeat containing 1	protein-coding	3.94307709598058	3.5818803972165	3.51437176238605	3.41126109510505	4.57439484662867	4.4409843880494	4.20699296807256	4.42048165363494	2.19638823073578	6.86747026356704e-07	2.48005918767346e-05
Merged-chr13-97561170-4	chr13	97561069	97561269	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046157, intron 1 of 2)	intron (NR_046157, intron 1 of 2)	1169.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	6.57694061117495	7.37554871673735	6.2849754160217	5.99898323511999	6.50050616259342	6.8144651685297	5.70860092046124	5.87345495252324	-0.540625041787272	0.344812901278784	0.653255859394495
Merged-chr6-125352094-4	chr6	125351995	125352195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	2372.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	5.48254701111014	5.52765143394574	5.4218023182221	5.41528291459274	6.10412082413573	5.90461110952871	5.96624197654149	5.99277585844925	0.889717632913805	0.000342930352006171	0.00565977775914716
Merged-chr10-40142322-4	chr10	40142221	40142421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028247)	promoter-TSS (NM_028247)	-67.0	NM_001114332	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	8.27608308849747	8.41340913204258	7.96518950283526	8.38294690614387	8.17994804906155	8.26685630624741	8.52828130103677	7.91566833896148	-0.0440447078020423	0.820138938662191	0.931166169767053
Merged-chr6-127240297-4	chr6	127240182	127240382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67685.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	6.5274714585439	6.60551355131711	6.37178133199081	6.17025570412072	6.88745811475121	6.68828733876354	6.57422376740893	6.43930002724651	0.362295937880036	0.119095393034936	0.381868146350454
Merged-chr8-110217863-4	chr8	110217749	110217949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146215)	promoter-TSS (NM_146215)	-111.0	NM_146215	234728.0	Mm.275341	NM_146215	ENSMUSG00000046441	Cmtr2	AU022703|C730036L12Rik|Ftsjd1|MTr2	cap methyltransferase 2	protein-coding	8.51966187915927	8.55285880302409	8.34510929406755	8.39570029739052	8.6580701384313	8.37549535351221	8.7178763022126	8.44098088145755	0.131730471533011	0.414218349906528	0.709016995190326
Merged-chr11-35827937-4	chr11	35827797	35827997	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025936, intron 3 of 14)	intron (NM_025936, intron 3 of 14)	6631.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	4.56008693149216	5.09298957693238	5.49820096287205	5.4605043115098	5.38535099427615	4.74725404942785	5.19876201567103	5.30948806926575	-0.0444255218543251	0.906777442307721	0.965425346885368
Merged-chr10-34283656-2	chr10	34283556	34283756	+	671.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009433, exon 1 of 1)	3' UTR (NM_009433, exon 1 of 1)	1466.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	3.23699728066167	3.56052152147375	3.62716898604938	3.11529009826844	3.17924502610679	3.41571472823564	3.70241266246719	3.41693721741479	0.14705584986412	0.793047064882481	0.919830055805412
Merged-chr15-5237611-2	chr15	5237511	5237711	+	775.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136079, intron 2 of 2)	intron (NM_001136079, intron 2 of 2)	6576.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	2.42034234631138	2.62410804094532	2.42050094687689	2.79463957954119	2.88345101131092	2.87785142251948	2.76064205428326	2.99385647799103	1.39745702739177	0.0615934086016916	0.262642565219463
Merged-chr9-54950682-4	chr9	54950550	54950750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011966)	promoter-TSS (NM_011966)	-209.0	NM_011966	26441.0	Mm.30270	NM_011966	ENSMUSG00000032301	Psma4	C9	proteasome (prosome, macropain) subunit, alpha type 4	protein-coding	7.86532186392089	7.84829041392367	7.6077978797246	7.70451794488327	8.0014422655137	7.74904803113772	8.20868993304967	7.54749806215175	0.188565057659669	0.341600338490761	0.650639445837748
Merged-chr14-56886450-4	chr14	56886362	56886562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029498)	promoter-TSS (NM_029498)	-141.0	NM_177627	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	7.58087535330087	7.42652935030808	7.67263457835907	6.32422586812053	7.46648619807852	7.62463358578926	7.53623222948588	7.55977169559011	0.2725146788616	0.335591634929894	0.645927430703489
Merged-chr15-78246844-4	chr15	78246727	78246927	+	830.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 1 of 9)	intron (NM_008677, intron 1 of 9)	2016.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	4.00542332315233	4.0399730929097	4.47837867675261	3.64054795453743	3.92177511139693	3.45814262368099	3.94026934314912	4.13922999391238	-0.491955922363922	0.345030290575439	0.653357561969643
Merged-chr1-34849861-8	chr1	34849792	34849992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175421)	promoter-TSS (NM_175421)	-67.0	NM_145516	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	5.82376647121877	5.63884175148503	5.75010571744447	5.87423984576803	6.12346091782277	6.0002835718658	5.99469540950466	6.00043709878794	0.403186007284477	0.09598707247149	0.339474502208496
Merged-chr4-130801449-4	chr4	130801351	130801551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	8914.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	7.14190762765843	6.93815366732995	7.46495888499706	7.16129064034603	7.22231186257397	6.94918132356828	7.31789110916221	7.10312005937925	-0.0373954467480573	0.855744305614553	0.945737752088283
Merged-chr3-107087575-4	chr3	107087469	107087669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-13998.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	6.97742085559807	6.71194135731763	6.95265425464013	7.17204908082122	7.01458989610882	7.25405598773035	7.17640293257364	7.17509108103265	0.244297802423259	0.228421771332253	0.537286714307472
Merged-chr7-73533661-4	chr7	73533589	73533789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	8057.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	5.69466007646805	5.29199789266538	5.09795483408989	5.7375982497878	5.38690109356626	5.47429849573338	5.20991127839639	5.13028793449181	-0.332875188729169	0.292782099218127	0.605213946687782
Merged-chr10-45000988-4	chr10	45000797	45000997	+	923.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66317.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	3.74787587376926	3.82288028610433	3.79990537953692	3.82036360916401	3.94296810998576	3.8126511357966	3.50731663420413	3.89472899831691	0.0179304208300518	0.968905696178204	0.988837646318788
Merged-chr14-121907455-4	chr14	121907368	121907568	+	942.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 3 of 8)	intron (NM_026861, intron 3 of 8)	8306.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	5.00274308607465	4.71606826231628	5.00358726509459	5.29490414993966	4.81918897420385	4.80099365006506	5.10342515046378	4.52800761745606	-0.409128887729249	0.25207595617437	0.563415012388855
Merged-chr17-63894899-2	chr17	63894799	63894999	+	982.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286415, intron 1 of 17)	BGLII|LTR|ERVK	16833.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	3.96339100877446	3.58247995397944	3.72749548463081	3.25442468169123	3.59233106515647	3.99777204076145	3.65941461203197	3.72529484648427	0.312572174829543	0.546689323395815	0.796495739432826
Merged-chr4-128655098-3	chr4	128654996	128655196	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	CpG	394.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	4.12440188972642	4.3003984671195	4.21807093387866	4.32700285679643	4.02135385066501	4.19991730289315	4.24315427937502	4.2595224005717	-0.188553757037439	0.634709262511557	0.845355991778317
Merged-chr5-34232028-4	chr5	34231930	34232130	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 6 of 12)	intron (NM_001015039, intron 6 of 12)	-44320.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	5.00879151589185	4.63490010704052	4.71383973064942	4.94657044630251	4.39279493615311	4.64573464968023	4.20667735634539	4.51066375338382	-0.868876127716045	0.0186620891342027	0.122248190915094
Merged-chr15-67996668-3	chr15	67996561	67996761	+	915.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	262195.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	3.18905491731491	3.06752920251023	3.34229954327077	3.4792050561336	2.63089207573346	2.77094998863235	2.80788534930663	2.95104091865429	-2.34927491012349	0.000700987462029382	0.0101516002539437
Merged-chr5-105684151-4	chr5	105684041	105684241	+	955.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-15828.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	6.06948398994768	5.35740664459996	6.45446833307615	6.23295678439432	5.29710371687683	4.98891272097428	5.59541344856497	5.28676330959525	-1.29804192811978	0.000140917609663646	0.00270725358657183
Merged-chr3-8667978-4	chr3	8667855	8668055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010423)	promoter-TSS (NM_010423)	-917.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	5.14582345880224	5.06436761335582	5.86621348324373	5.62125652302676	5.03830224211818	4.97609338558386	5.45223356098408	5.50245795978183	-0.37355580656731	0.284595208284873	0.596396465009391
Merged-chr16-91717160-4	chr16	91717044	91717244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026994, intron 2 of 11)	MTE2a|LTR|ERVL-MaLR	11658.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	5.63947951121241	5.51116400206759	5.1897406677898	5.90935078525082	5.58228177469658	5.53514099055633	5.63682830427688	5.61094282442556	-0.0327041269316928	0.911840567396571	0.967058605013842
Merged-chr6-82753193-4	chr6	82753041	82753241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 2 of 17)	intron (NM_013820, intron 2 of 17)	21313.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	6.61397455023671	7.09489972026786	7.02053699509818	6.16720344211919	7.10537277744664	6.60462382182574	6.64324309253094	6.36490802953271	-0.072138820084843	0.802876264137633	0.923936032101707
Merged-chr2-180925373-4	chr2	180925290	180925490	+	859.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3633.0	NM_001163247	329581.0	Mm.187879	NM_001163247	ENSMUSG00000038840	Birc7	E130019N06|KIAP|Livin|ML-IAP	baculoviral IAP repeat-containing 7 (livin)	protein-coding	4.27048195878936	4.6257586178618	3.92090490427095	3.87746694627781	4.44929151299664	4.10160262735026	4.16197965801585	4.39351930674179	0.205275589961577	0.648983277061942	0.852504153384524
Merged-chr5-25705796-4	chr5	25705683	25705883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020570)	promoter-TSS (NM_020570)	14.0	NM_020570	57434.0	Mm.143767	NM_020570	ENSMUSG00000028933	Xrcc2	4921524O04Rik|8030409M04Rik|RAD51|RecA	X-ray repair complementing defective repair in Chinese hamster cells 2	protein-coding	6.66490240540449	6.69099548398763	6.68111277883071	6.65632695993472	6.69115081858505	6.66447455568112	6.64709618544249	6.63072603459677	-0.017292410009464	0.929874034068726	0.974727857709636
Merged-chr3-154332102-4	chr3	154331983	154332183	+	890.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040387, intron 1 of 2)	intron (NR_040387, intron 1 of 2)	1262.0	NR_040387	99686.0	Mm.38082	NR_040387	ENSMUSG00000093738	AI606473	-	expressed sequence AI606473	ncRNA	4.54508954759408	4.27719979441834	4.09211510410582	4.85085578013869	4.27834222675096	4.46750385925709	4.5616802499317	4.1939066169601	-0.257729096201199	0.545480691847966	0.795940029589181
Merged-chr7-19503683-4	chr7	19503580	19503780	+	942.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4651.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	4.72324020632734	4.8734290685396	4.30585850740384	3.85315614437157	4.93759454309668	4.96444666412239	4.33470098605845	4.14704129206797	0.319751112492015	0.507722038634218	0.773013347050223
Merged-chr9-107296157-4	chr9	107296050	107296250	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009895)	promoter-TSS (NM_009895)	-509.0	NM_009895	12700.0	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	5.40457501406793	5.73818845823537	5.09121565393179	4.72314101608183	5.3646575068619	5.33718180549349	5.37825560260251	5.28522623609499	0.103078310902133	0.769558778486159	0.909742530773464
Merged-chr9-45084691-3	chr9	45084599	45084799	+	863.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005421, intron 3 of 10)	intron (NM_001005421, intron 3 of 10)	5516.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	5.69069645860927	5.33287152412191	5.67120536266469	5.66926982995609	4.14999249606195	4.2908446076908	4.31665512852305	4.63965963761318	-2.60376618133879	1.49602349964606e-12	1.55453221432565e-10
Merged-chr4-141213963-4	chr4	141213874	141214074	+	991.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081174)	promoter-TSS (NM_001081174)	18.0	NM_001081174	76166.0	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723|b2b2804Clo|b2b2827Clo	REM2 and RAB-like small GTPase 1	protein-coding	5.36798803524169	5.24803517517522	4.96073363039498	5.12963405859984	5.8982731246372	5.77913723546898	5.2520749987196	5.03489485994581	0.648282106006125	0.0547231364292871	0.244310684708466
Merged-chr9-110994867-4	chr9	110994779	110994979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152179, intron 2 of 6)	RMER17C2|LTR|ERVK	-5166.0	NM_153100	235636.0	Mm.441138	NM_153100	ENSMUSG00000066319	Rtp3	Tmem7	receptor transporter protein 3	protein-coding	5.65304053108899	6.3768088790564	5.70862497500497	5.96818494073036	6.04347397825174	5.9628703851401	5.98503424599303	5.73102757816015	-0.0439980487922642	0.875070762261159	0.953036626889452
Merged-chr15-75748419-4	chr15	75748320	75748520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194350)	promoter-TSS (NM_194350)	-498.0	NM_194350	378435.0	Mm.309589	NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding	7.14055727108437	7.55370454857344	7.41123450265418	7.26272833961898	7.29292954904487	7.54879665641301	7.29464919800159	7.47217001322876	0.0705165216351726	0.711472130214258	0.884430620073572
Merged-chr17-13869297-4	chr17	13869267	13869467	+	886.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 22 of 33)	MTA_Mm|LTR|ERVL-MaLR	-79006.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	3.73423782001896	3.59813429865964	4.11914942094422	3.48322002770694	4.11541824452556	3.67488026652185	3.92392250048548	4.1966417007898	0.708384482460487	0.14712290033085	0.42788514025699
Merged-chr2-5715234-2	chr2	5715134	5715334	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177343)	promoter-TSS (NM_177343)	-472.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	3.91787050657241	3.92769166619321	3.96659808567458	3.69988210759179	3.69183373918144	4.13666402588874	3.85233039729331	3.96418091622713	0.117379405947265	0.794518723459539	0.920564651199299
Merged-chr5-137863591-2	chr5	137863489	137863689	+	553.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5540.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	3.7358143172951	3.57199009531764	3.73643372463632	3.05430189260595	3.3513359646457	3.1811615780973	3.37485620792034	2.91429738093951	-1.16601039580582	0.0649846883588661	0.271181634091325
Merged-chr2-173378127-2	chr2	173378027	173378227	+	845.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101594.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	3.18373179688723	2.86123170103697	3.01892537662251	2.96128851548551	2.83028975853661	2.9371294485662	2.67967455796826	3.18227993511247	-0.38492926856382	0.541871134448733	0.793491190310592
Merged-chr18-25486582-2	chr18	25486482	25486682	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155531, intron 12 of 13)	intron (NR_155531, intron 12 of 13)	193166.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	3.03957834105511	3.0916926237955	2.68326059844099	2.82692897440014	3.07709771693192	3.15263836952138	3.02886705423112	3.59028873106996	1.23693049210362	0.0478887081607732	0.225698948412727
Merged-chr16-30374493-4	chr16	30374398	30374598	+	818.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128096, intron 2 of 33)	intron (NM_001128096, intron 2 of 33)	14032.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	3.85348541352263	3.61036421218774	3.18699909107107	3.65143390524607	3.85806367173195	3.92684427160273	4.09173684144996	3.64585279104046	0.853777118800653	0.0990202294225001	0.344998858047011
Merged-chr13-112395157-4	chr13	112395050	112395250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68920.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	7.11157390551437	7.10049687111468	7.31346239979956	7.15346366335246	6.94744337972877	6.70365038845994	7.01860163976679	6.76783533491212	-0.413750089568073	0.0339886451697959	0.181930728252847
Merged-chr13-49326876-2	chr13	49326776	49326976	+	645.383301	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14673.0	NM_001039179	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	2.89420468498921	2.91254474720947	2.75797370724713	2.77146889385553	2.93477021926417	3.12920352495371	3.06379912117103	3.18241282470854	1.04841566812301	0.0733896353202538	0.291750955177903
Merged-chr16-44772739-4	chr16	44772625	44772825	+	801.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	6989.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	3.65845357407951	3.76151407567266	3.71468077755398	4.11329218269392	3.84218023707114	3.77608709801146	3.94471124001871	3.76605089569403	-0.0293287264644904	0.95043527579321	0.982264362614525
Merged-chr14-120268707-4	chr14	120268596	120268796	+	944.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6973.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	3.86140852581727	4.33550853832079	3.92306320587205	4.21988982072353	4.42966361968049	4.6691179921367	4.84001436435157	4.33056262300629	1.09431059104676	0.00980139044872793	0.0777589356609457
Merged-chr14-25484252-4	chr14	25484148	25484348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	25063.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	7.86243258918242	7.90325953043711	7.56508538603581	7.87696279865207	7.57229140558478	7.63777007026848	7.75205287942924	7.55080378860789	-0.242760929811146	0.1641033666181	0.454060778717579
Merged-chr17-23979701-4	chr17	23979601	23979801	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4471.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	5.24573922115252	5.38163760044134	5.4470121958913	5.49205563615236	5.88056516262757	6.18638899813789	6.18207048545776	5.90570522364215	1.04204274936086	8.21059066239314e-05	0.00171838174877531
Merged-chr5-134690464-4	chr5	134690373	134690573	+	985.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1883.0	NM_010717	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	4.81706874080747	4.84287869592798	5.03922965593791	4.66685040447377	5.24323896677661	5.30960139658996	5.28565563612208	5.13349911452619	0.797659330065858	0.00965589915273632	0.0770159196836513
Merged-chr18-46360067-3	chr18	46359961	46360161	+	844.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48133.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	3.71741247297108	3.60987964824803	3.51401181359751	3.7498681206039	3.27187032136673	3.38448948980855	3.38644244963463	3.66779228448771	-0.751425798718387	0.141486633977906	0.418529150801574
Merged-chr18-5764412-3	chr18	5764312	5764512	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360982, intron 5 of 7)	intron (NM_001360982, intron 5 of 7)	171765.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	4.0999479663985	3.93295153334194	3.82227689479537	3.45011722804469	4.82665372893935	4.1781894199711	4.39122824830994	4.72327604667396	1.83855085552576	4.48080366488407e-05	0.00102817254694643
Merged-chr6-97205717-4	chr6	97205610	97205810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301857)	promoter-TSS (NM_001301857)	-63.0	NM_001301859	22200.0	Mm.277626	NM_011666	ENSMUSG00000030061	Uba3	A830034N06Rik|AI256736|AI848246|AW546539|Ube1c	ubiquitin-like modifier activating enzyme 3	protein-coding	8.07708370132503	8.36235950658859	8.22480900418723	7.89929836439018	8.00539316527224	8.43096791375032	7.9321058551088	7.9219071746033	-0.077210150233843	0.693673339534282	0.875504905218644
Merged-chr7-100855994-4	chr7	100855898	100856098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	7415.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	7.06885123100288	7.18721035661345	7.09467332748228	7.28564234665402	7.39528625340082	7.10336329606637	7.54534047969083	7.27071908374575	0.233075191793302	0.226089950003973	0.534664159983149
Merged-chr1-36914689-4	chr1	36914573	36914773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 1 of 40)	intron (NM_018872, intron 1 of 40)	24854.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	5.68526863603579	5.96426263366968	5.5250112544848	5.74867723688462	5.69461068006168	5.64321936192568	5.52556504331172	5.68224525983223	-0.174777324864879	0.508890635079413	0.773827521189954
Merged-chr7-135768387-3	chr7	135768295	135768495	+	865.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52016.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	4.31533914348527	4.47800353439746	4.07543083679647	3.87920982409463	4.47188093019718	4.68772578740086	4.25225106782353	4.22242614502774	0.540988302215485	0.201060644239997	0.503307188847283
Merged-chr2-93599948-4	chr2	93599851	93600051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42483.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	7.32102247639189	7.33248981618843	7.45373383820889	7.6888769607329	7.70705816124192	7.51030552884756	7.67522842116469	7.29569933012448	0.123687498314854	0.528921436777549	0.785349804922799
Merged-chr8-117338839-4	chr8	117338719	117338919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-10351.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	5.78676129581074	5.41891711440064	6.23995667153944	6.25555686973617	5.73797547855504	5.72223671365642	5.83000340532137	5.96734877127656	-0.263665376614979	0.376175028484932	0.679007344082742
Merged-chr7-30421322-1	chr7	30421222	30421422	+	1000.0	f0_c57.idr	promoter-TSS (NM_001360906)	promoter-TSS (NM_001360906)	-409.0	NM_001360906	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	4.31843658616076	4.13972181393379	3.91791252124424	3.97675854169223	5.02712137573346	5.14344672240787	4.75385392024863	5.08393144804868	2.03594607831011	3.02698926643467e-08	1.4587546986835e-06
Merged-chr3-37673970-4	chr3	37673870	37674070	+	906.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34023.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	4.54474548987561	4.65419424364478	4.54546113603016	5.06600659947117	4.49727039861821	4.44722431491511	4.78513494728055	4.36411164402706	-0.45545820386736	0.238640949567427	0.548972916561797
Merged-chr14-20695713-2	chr14	20695609	20695809	+	1000.0	f0_balb.idr|f0_c57.idr	TTS (NM_001168273)	TTS (NM_001168273)	741.0	NM_028428	73068.0	Mm.277552	NM_028428	ENSMUSG00000039357	Fut11	3110009G03Rik|AI317183	fucosyltransferase 11	protein-coding	6.07971409243024	5.89934554108498	5.69274924716227	5.83851744465826	6.11890291185706	5.73027363418982	5.90489904530019	5.83953097852787	0.0586804578513945	0.818701802612703	0.930475502974644
Merged-chr17-70851211-4	chr17	70851130	70851330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009372)	promoter-TSS (NM_009372)	-20.0	NM_009372	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	7.90955094401057	8.07202114866861	7.96778010817222	7.633267099223	8.12497537879242	8.23265142349779	8.25705175161377	7.83828144950014	0.290106262419899	0.119433812549628	0.382419223727845
Merged-chr12-52624856-4	chr12	52624756	52624956	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-22534.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	5.08916873057093	4.82658501584344	4.81216522987888	5.03557151600953	5.7439008001719	5.4338905468479	5.53528685443029	5.84507139741062	1.25020511340669	2.74758443027934e-05	0.000673915617377165
Merged-chr10-78043555-4	chr10	78043448	78043648	+	674.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271549)	promoter-TSS (NM_001271549)	62.0	NM_001271552	11634.0	Mm.35300	NM_009646	ENSMUSG00000000731	Aire	-	autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)	protein-coding	3.7546004377744	3.84189017782755	3.57844939991385	3.73397010588842	4.27965973096941	3.98228293378097	3.89425394764961	4.00266045739296	0.903096066736844	0.0418436728550466	0.207235651972541
Merged-chr14-40937319-4	chr14	40937213	40937413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	10896.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	6.59948440831351	6.33200469786613	6.4867260835716	6.99561014761741	6.40140371342822	6.57552530212688	6.40164995657864	6.67135872724347	-0.192568939143479	0.4319721285276	0.72207374328275
Merged-chr5-107359579-4	chr5	107359481	107359681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_054054, exon 12 of 19)	exon (NM_054054, exon 12 of 19)	28387.0	NM_054054	114642.0	Mm.182836	NM_054054	ENSMUSG00000029279	Brdt	7420412D09Rik|Brd6|Fsrg3	bromodomain, testis-specific	protein-coding	6.07279602212313	5.96959140906919	5.7679283949515	6.04348904128607	6.11356964437187	6.07142945471736	6.49181832761118	6.11063527253124	0.359452495909215	0.1436046163459	0.421997893934639
Merged-chr15-42984150-3	chr15	42984150	42984350	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	186568.0	NM_001357957	239405.0	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	4.54660058900095	4.55001258861447	5.00004458302638	4.76091778748837	3.64509942125571	3.8376920041871	3.69713186388307	3.63955571410949	-2.84321122746421	3.84448329804729e-09	2.21713724963357e-07
Merged-chr8-37215770-4	chr8	37215674	37215874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-191536.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	5.28072767436206	5.37324458792167	5.66226484108384	6.03424015136915	5.8155955706371	5.46077420059208	5.68289254833967	5.70783936347875	0.0535052861466609	0.863393533925487	0.948591391532472
Merged-chr5-100039953-4	chr5	100039868	100040068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026421)	promoter-TSS (NM_026421)	-26.0	NM_026421	67870.0	Mm.11311	NM_026421	ENSMUSG00000029326	Enoph1	2310057D15Rik|BB183658|C81437	enolase-phosphatase 1	protein-coding	7.47565050985118	7.5127104420653	7.20107643490112	7.2309659884802	7.62320493121788	7.82310438785101	7.64924864514177	7.89553185913891	0.518048901436043	0.00481223215655523	0.0462045624376078
Merged-chr1-58348866-4	chr1	58348744	58348944	+	819.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008419, intron 28 of 35)	intron (NM_001008419, intron 28 of 35)	-44292.0	NM_025824	66882.0	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	3.93347871819579	3.5328071530953	3.31395018097017	3.92821670590658	4.4268707623715	4.24574959206598	3.7605857447856	4.19960787568106	1.26588649067685	0.0177316443610269	0.117977258737478
Merged-chr14-26531981-4	chr14	26531874	26532074	+	870.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 1 of 22)	intron (NM_001310445, intron 1 of 22)	2650.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	4.57625451641733	4.52677801459472	4.61801124713208	5.09334284576037	5.02016072156325	4.47975585439844	4.37950244903838	4.65473984788323	-0.152202780990374	0.706427874272735	0.882026349021226
Merged-chr4-11146853-2	chr4	11146753	11146953	+	744.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9588.0	NM_001199105	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	2.70511430040167	2.55319249600884	2.97451056776241	2.38227352433948	2.57020053860538	2.46986685910063	2.35997249950305	2.51094625111892	-0.976878425607843	0.190466429515151	0.489712830026691
Merged-chr2-51982423-4	chr2	51982325	51982525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9217.0	NM_001141948	64685.0	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	5.68015880698382	5.60804490343039	5.4656298567464	5.85515378579906	5.55851999561922	5.42093519885588	5.76971925415034	5.54690982661218	-0.159646485430675	0.560716170504072	0.804677842301444
Merged-chr10-78134594-4	chr10	78134490	78134690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35178.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	6.15418347479122	6.13316233483207	6.15527186704242	5.86962566400854	6.35016568672303	6.20606550854318	6.27271480216016	5.93468703647471	0.212298035859873	0.382058849008844	0.684226111802756
Merged-chr10-19937114-4	chr10	19937011	19937211	+	980.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	2585.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	6.52898738329275	6.80812031589874	6.5153599204045	5.99088113380757	5.65078336421943	6.18661160978783	5.4689109282788	5.49265153143948	-1.17770513062154	0.000125253832160556	0.00245015054047814
Merged-chr6-5052584-4	chr6	5052471	5052671	+	916.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 3 of 15)	ORR1F|LTR|ERVL-MaLR	141375.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	4.63163147416516	4.16670296118806	4.66894607045093	4.67373925745444	4.29747885511263	4.21283137940223	4.6465526185642	4.62931220757371	-0.219366818135139	0.581251765842338	0.816214817149224
Merged-chr2-160578919-2	chr2	160578819	160579019	+	967.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66978.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	3.37597894351515	3.40418555381949	3.12118295440336	3.32427223279227	3.55934675069541	3.43040598312744	3.71209100388979	3.48565269255261	0.809373215080344	0.113060368096921	0.371624287267179
Merged-chr2-5025390-2	chr2	5025290	5025490	+	858.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 12 of 13)	B2_Mm2|SINE|B2	-12599.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	3.45208611201068	3.2718730765548	3.34472676937021	2.92724529758089	3.39843367620889	3.27661527223419	3.33154859737489	3.45054718623003	0.421937561642325	0.449023463485107	0.734230211518641
Merged-chr4-152010457-4	chr4	152010364	152010564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033352, intron 1 of 3)	intron (NM_001033352, intron 1 of 3)	1573.0	NM_001033352	242785.0	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	7.39126454049473	7.00438434403714	6.79428537884521	7.46323497680163	7.12542895893213	7.3058285779311	6.98285780637244	7.48782783835774	0.0472036816482704	0.839020492579532	0.938856878340637
Merged-chr5-143626389-3	chr5	143626284	143626484	+	856.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011182, intron 1 of 12)	LTR33A_|LTR|ERVL	3937.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	3.09941720192752	3.44273877031372	3.09974431753029	3.31670689456579	3.47287032763079	3.33758407290022	3.21508051401404	3.44570257094173	0.427505732506654	0.432692448228094	0.722611204268057
Merged-chr15-89123163-4	chr15	89123064	89123264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163319)	promoter-TSS (NM_001163319)	-14.0	NM_001163319	328580.0	Mm.380934	NM_001163319	ENSMUSG00000051786	Tubgcp6	AI843275|D430023H11|GCP-6|mKIAA1669	tubulin, gamma complex associated protein 6	protein-coding	6.18418294979445	6.55759067733594	5.70365353257628	6.23187863109247	6.87611477833232	7.00831898517527	6.57857716529107	6.48086192745965	0.794051185265596	0.0028611989809701	0.0308151433297732
Merged-chr11-83082983-4	chr11	83082874	83083074	+	944.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SRV_MM-int|LTR|ERVK	17862.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	4.57995542849036	4.70615979996462	4.53960869256534	4.60241979100525	4.68809918645789	4.86680949427635	4.38863670953336	4.45054050846191	0.00924567750159505	0.979530430995869	0.99269129061727
Merged-chr10-116505514-4	chr10	116505416	116505616	+	947.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359253, intron 2 of 11)	intron (NM_001359253, intron 2 of 11)	22433.0	NM_001359253	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	5.20943008450954	5.21381519526123	5.17810760531459	5.48610478494423	5.14484391379896	5.18081089561868	5.33336045678913	5.29862134374635	-0.106336804746113	0.720468344898473	0.888295999056459
Merged-chr2-92459754-4	chr2	92459658	92459858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_211358)	promoter-TSS (NM_211358)	36.0	NM_211358	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	6.73281224545593	6.51578344526455	6.35710059875071	6.34381676817514	6.2343678621213	6.22629771950245	6.51055338553762	6.55501346592641	-0.150343629438903	0.516531730948748	0.778279996996913
Merged-chr14-50896277-4	chr14	50896190	50896390	+	994.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3035.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	5.21351322509732	5.25825823135911	4.93800034894364	5.35157533905755	5.37710810890204	5.18883144207092	5.02452613107155	5.24146650455579	0.0162596676105676	0.957796365639756	0.984917255520481
Merged-chr17-78604590-2	chr17	78604490	78604690	+	617.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001197028, intron 8 of 12)	intron (NM_001197028, intron 8 of 12)	96527.0	NM_028813	74199.0	Mm.292983	NM_028813	ENSMUSG00000024076	Vit	1700052E02Rik|1700110E08Rik|2810429K11Rik|AKH|akhirin	vitrin	protein-coding	2.67254921676833	2.46462638569532	2.49899122840892	2.27557891400757	2.46795292179932	2.40019716338581	2.14071357821884	2.22254750378312	-0.959053767429829	0.22797617203353	0.536735221419464
Merged-chr17-88442062-4	chr17	88441952	88442152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355742, intron 1 of 5)	intron (NM_001355742, intron 1 of 5)	1348.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	5.69503595782038	5.1680144038536	5.41844050078971	5.3073116315492	5.42764337536911	5.27709188299324	5.44620441100758	5.29640604280275	-0.0583463974373954	0.842360047592242	0.940176660530117
Merged-chr7-102028176-4	chr7	102028082	102028282	+	974.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 6 of 8)	intron (NM_029211, intron 6 of 8)	-10027.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	5.23132406049429	4.71426031440836	4.85319664911091	5.32374775739705	5.52739974441935	4.77243568384504	5.20617513087072	5.25800140877889	0.30091979633812	0.403682147099893	0.700922982752502
Merged-chr10-89745711-6	chr10	89745577	89745777	+	999.357178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029166, intron 1 of 20)	CpG	686.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	4.16911464325314	4.08884816165479	4.65140651341078	4.02855402453304	4.23464926280711	4.39186826191673	4.41260325493529	4.30560437285798	0.218655853932139	0.597395224649722	0.825256992211092
Merged-chr1-79684241-4	chr1	79684152	79684352	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-12280.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	5.2160839547642	5.13858131166943	5.85744097946585	6.16657020579205	5.725357371536	5.62523821930199	5.82739770384697	5.58655463074872	0.0130055426242907	0.969930196244153	0.989135083720827
Merged-chr5-138998251-6	chr5	138998166	138998366	+	905.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3313.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	4.10429033656396	4.2364235770121	4.00767602034781	3.93688662702543	4.08656390164687	4.07902150489772	4.03998548807225	4.35577254422973	0.19809490543318	0.632530793811854	0.843973166742038
Merged-chr19-43993570-4	chr19	43993460	43993660	+	794.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7040.0	NM_030703	93721.0	Mm.206774	NM_030703	ENSMUSG00000025196	Cpn1	0610011F20Rik|CPN	carboxypeptidase N, polypeptide 1	protein-coding	3.39563699899967	3.48115607610386	3.45606144892685	3.35014267700286	3.37097668877095	3.5120680075371	3.87996385713705	3.85387583449889	0.806255931644197	0.111666923834778	0.369278013921001
Merged-chr1-148903315-4	chr1	148903219	148903419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1019120.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	7.85131244324991	7.58199510394124	7.86708730943805	8.04030640451115	7.74940692724811	7.69903363843423	7.5666900228041	7.46801401779712	-0.292088721731331	0.114939004856125	0.375165929593897
Merged-chr3-84868231-4	chr3	84868131	84868331	+	750.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 3 of 13)	intron (NM_001177773, intron 3 of 13)	4086.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	4.03266507387758	3.73848586866928	4.43347010648209	4.13597514497344	3.97282888118181	3.77271013843909	4.10559017915512	3.77130855840663	-0.512502056765584	0.271156423396878	0.582960102119319
Merged-chr1-39576026-5	chr1	39575936	39576136	+	905.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033135, intron 1 of 6)	intron (NM_001033135, intron 1 of 6)	1311.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	4.13578114796956	3.87808164695027	5.0462815621842	4.57825208324287	4.50916281422058	4.03288596094001	4.44208256265375	4.57801422997639	-0.177549632492401	0.715882481501833	0.886371813543908
Merged-chr3-121817626-2	chr3	121817526	121817726	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2324.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	3.08008165779591	2.80834794762583	3.13810977815759	2.81673118773581	3.11934637424876	3.06665431632631	3.00935370648938	3.24414132061194	0.636047167365181	0.278318956285775	0.590528660967155
Merged-chr14-64327636-4	chr14	64327474	64327674	+	970.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 1 of 4)	MLT1F1|LTR|ERVL-MaLR	89382.0	NM_001253716	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	5.54550951162868	5.86394525499944	5.36586886805636	5.64764375281081	5.68877199873561	5.51201869818859	5.79313176880224	5.9265360226295	0.189317132519971	0.491742788293394	0.763180775961788
Merged-chr9-105198901-2	chr9	105198789	105198989	+	938.625	f0_balb.idr|f1_balb.idr	intron (NM_172461, intron 15 of 15)	intron (NM_172461, intron 15 of 15)	-53807.0	NM_028562	73532.0	Mm.23516	NM_028562	ENSMUSG00000032566	1700080E11Rik	AI429110|Tseg8	RIKEN cDNA 1700080E11 gene	protein-coding	3.88874826652802	3.67965703714885	3.67082397600922	3.78376639655988	3.25710383874354	3.26093090997721	3.20693428138164	2.99755053047522	-2.1003646148795	0.000269545314743154	0.004646637432333
Merged-chr5-124026585-4	chr5	124026484	124026684	+	985.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	5676.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	5.21216479649389	5.62295596368448	5.27741261335826	4.68874070228474	5.90782300499124	5.57179572246392	5.01233311530048	5.36448760399534	0.489809687805099	0.186236767293084	0.484125681380109
Merged-chr12-57211821-3	chr12	57211700	57211900	+	953.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14328.0	NM_172577	217593.0	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding	4.16452623396879	4.06731181124463	4.6093431909882	3.96810783324991	3.53980144659144	3.99066202977626	4.18938336232436	3.91909388377356	-0.7805928305806	0.106543304141447	0.359892076949697
Merged-chr15-58015413-4	chr15	58015323	58015523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18871.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	7.60832280925235	7.62877764509614	7.78864015966052	7.79076059228155	7.6147819633103	7.55737616033568	7.63194384606903	7.81326506314286	-0.0704354997819819	0.680014606023822	0.868593041138696
Merged-chr9-96544252-4	chr9	96544148	96544348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053268, intron 23 of 23)	intron (NM_053268, intron 23 of 23)	-65573.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	6.39726130214875	6.83519945487843	6.62395365539046	6.81595894347494	6.72213650529001	6.89210642763531	6.95757643059953	6.58706487915462	0.146775214042697	0.504218215172861	0.770626277304553
Merged-chr3-79591405-4	chr3	79591341	79591541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026352, exon 1 of 10)	5' UTR (NM_026352, exon 1 of 10)	104.0	NM_026352	67738.0	Mm.295252	NM_026352	ENSMUSG00000027804	Ppid	4930564J03Rik|CYP-40|Ppidl|Ppif	peptidylprolyl isomerase D (cyclophilin D)	protein-coding	6.56499031584974	6.36644074534739	6.51963606683883	6.31422993363789	6.24019779024508	6.31176918330683	6.20553832361486	6.38186643717909	-0.224621222375323	0.307805197058397	0.620167179614461
Merged-chr13-98912805-4	chr13	98912734	98912934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 1 of 23)	intron (NM_178716, intron 1 of 23)	13550.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	5.41556671921854	5.39898439660957	4.95456352055449	5.46797620137717	5.31951998266726	5.61603418647076	5.21271994690515	5.13567543722638	-0.00868756481784411	0.977685306622409	0.991939645680407
Merged-chr13-80953113-4	chr13	80953048	80953248	+	679.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10926.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	4.28553721975907	3.98507462810671	4.67310299920675	4.42117874044415	4.01528884987083	3.64523011984572	4.09147375449649	3.78735318064954	-1.20305116158747	0.0104496094288263	0.0815294036538885
Merged-chr6-5256239-4	chr6	5256115	5256315	+	968.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173006)	promoter-TSS (NM_173006)	18.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	5.86976221449162	5.27355316152431	5.34114086496519	5.88250362340304	4.79427081625249	5.21942188935139	5.53204485211584	4.78731717972684	-0.91807395590003	0.0102596205859193	0.0804261600974838
Merged-chr11-32538951-4	chr11	32538859	32539059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	5693.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	7.59139949233245	7.40199455268993	7.78292526297116	8.01661486361213	7.24918546831903	7.23419175698804	7.39134513471251	7.1271504191098	-0.631301872450045	0.00205252323501697	0.0238447121503628
Merged-chr9-21168438-4	chr9	21168336	21168536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	intron (NM_183408, intron 1 of 14)	2722.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	7.48676532388443	7.86264437653198	7.35975990114523	7.40711984231571	7.56288057748745	7.56789968327729	7.52370534541678	7.39551957658904	-0.0375450036742929	0.845803308337248	0.941578483422717
Merged-chr2-118307811-4	chr2	118307712	118307912	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045919, intron 2 of 2)	intron (NR_045919, intron 2 of 2)	2898.0	NR_045919	73358.0	Mm.437192	NR_045919	ENSMUSG00000085889	1700054M17Rik	-	RIKEN cDNA 1700054M17 gene	ncRNA	5.03376257792398	5.38004451329696	5.10721507857437	5.38068535360542	5.50376419795057	5.17551608327879	5.57053531963399	5.41528918232549	0.32091292852878	0.283239590883541	0.595360804251864
Merged-chr2-26021739-4	chr2	26021656	26021856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133835)	promoter-TSS (NM_133835)	4.0	NM_133835	98766.0	Mm.247824	NM_133835	ENSMUSG00000036352	Ubac1	1110033G07Rik|AA407978|GBDR1|Gdbr1|Kpc2|Ubadc1	ubiquitin associated domain containing 1	protein-coding	6.89166539798803	6.96623829712702	6.58027025635327	6.68332958181153	6.97749193922296	6.82337156038378	7.0407648246919	6.84783554043333	0.200704508869834	0.327075799592603	0.63867529942819
Merged-chr6-52957911-3	chr6	52957806	52958006	+	745.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	LTR41B|LTR|ERVL	-48286.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	3.51458470199138	3.18576493863495	3.11126100976999	3.09168921713898	3.40967606802628	3.41370907673221	3.39805452111285	3.46254680010545	0.695596056874329	0.190835195124046	0.490284569083293
Merged-chr13-98803881-4	chr13	98803760	98803960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 2 of 25)	intron (NM_172591, intron 2 of 25)	11589.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	6.22212633058484	6.21241483602046	6.42398355506558	6.56863766533737	6.16320722702802	6.31830677017258	6.30427062781488	6.36777965479804	-0.141668477976664	0.538286691079695	0.791477449791602
Merged-chr10-127610771-4	chr10	127610661	127610861	+	986.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 2 of 88)	intron (NM_008512, intron 2 of 88)	10387.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	4.93354697498774	4.85961394893733	5.03210924357115	5.18630082495674	4.6911750180115	4.41976880155008	4.60864945135567	4.99694008806447	-0.654896273007978	0.0621946410320952	0.263889644755794
Merged-chr4-94556788-4	chr4	94556699	94556899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026368)	promoter-TSS (NM_026368)	-3.0	NM_026368	67770.0	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	7.37762945682633	7.48196247162187	7.2361913658289	7.62886734308702	7.87200336430603	7.80044337678014	7.72273116416458	7.64334491083165	0.412627555017552	0.023374856319258	0.141913928518293
Merged-chr19-40513835-4	chr19	40513743	40513943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009166)	promoter-TSS (NM_009166)	-31.0	NM_009166	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	8.73325099666429	8.64977853635745	8.59073348396983	8.82097133896514	8.33680112748763	8.40627297181238	8.75900677946713	8.38518646327688	-0.280690719649409	0.0928441221219364	0.333411622446764
Merged-chr6-53288065-5	chr6	53287952	53288152	+	801.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 1 of 10)	CpG	749.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	3.74896131490685	3.7105654577299	3.55147620593791	3.34436715725136	3.32329836408822	3.36557306556343	3.36786183960282	3.70057791720202	-0.480504156623193	0.361545592376383	0.666799563679493
Merged-chr2-31259096-4	chr2	31258958	31259158	+	951.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019681, intron 1 of 7)	intron (NM_019681, intron 1 of 7)	13135.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	4.57943994022542	4.55614274279281	4.65891494505358	4.5066926212081	4.40147917322544	4.53733242255675	4.55898087967367	5.01748026838484	0.160734479466565	0.664381049597984	0.860976199419854
Merged-chr10-85386728-3	chr10	85386609	85386809	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028709)	promoter-TSS (NM_028709)	-105.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	4.68343026619917	4.34718668464474	4.62445347074043	4.05172692138368	7.80565479381549	7.7625794341294	7.72598010672525	7.70361585551814	5.46782053184684	3.44344755109291e-76	2.45101153239242e-71
Merged-chr1-78724642-4	chr1	78724567	78724767	+	917.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66227.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	4.73623279734488	4.49444340086062	4.62423398555681	4.43422095489543	4.45101550835032	4.83452965059984	4.67817817056115	4.62121468858431	0.174152316484934	0.627133239368684	0.841002239063709
Merged-chr11-51606080-4	chr11	51605973	51606173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048061, intron 2 of 7)	CpG	808.0	NM_001048061	15384.0	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	7.1123540311029	7.68828573855582	7.52497402846478	7.17704155809138	7.64683463754661	7.54942136860448	7.35560770021269	7.54645893617959	0.183801486939711	0.373145624171724	0.676789871854101
Merged-chr1-184020709-1	chr1	184020609	184020809	+	759.0	f0_balb.idr	Intergenic	Intergenic	13289.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	3.13794316934149	2.97016774248926	3.02571714921633	3.47859885071499	2.58721524505064	2.87329612296596	2.68604813173442	2.96396018835916	-1.83523220922518	0.00842440466634807	0.0696285067052936
Merged-chr17-25792354-4	chr17	25792257	25792457	+	946.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285982)	promoter-TSS (NM_001285982)	30.0	NM_001285982	214917.0	Mm.26783	NM_145410	ENSMUSG00000057411	Fam173a	-	family with sequence similarity 173, member A	protein-coding	4.64021217886794	4.62468998485812	4.48399219596129	4.32625966030352	4.42133075892176	4.48099323861094	4.33366857955987	4.74299423948985	-0.0269612669120244	0.942721474508945	0.97926361084735
Merged-chr6-33400634-2	chr6	33400534	33400734	+	542.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347089, intron 7 of 9)	L1MB7|LINE|L1	151506.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	2.19063546512953	2.67513770500606	2.42429901494796	2.05570363805162	2.32889080634757	2.67070284585933	2.5507181689229	2.79549979270427	1.26010160128762	0.124150110809022	0.390992275271539
Merged-chr13-38613507-3	chr13	38613402	38613602	+	760.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139063, intron 3 of 4)	intron (NM_139063, intron 3 of 4)	21607.0	NM_139063	17828.0	Mm.261554	NM_139063	ENSMUSG00000038982	Bloc1s5	1810074A19Rik|Muted|mu	biogenesis of lysosomal organelles complex-1, subunit 5, muted	protein-coding	3.33143508555087	3.37214537764636	3.81981944517707	3.6210404453882	3.10628568612449	3.38192848786319	3.37808263911906	3.55077400097599	-0.686257002854587	0.214341724544903	0.520100552648178
Merged-chr2-84638653-4	chr2	84638555	84638755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	10825.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	5.9950635588106	6.06545449272924	6.24996032160767	5.95536485392894	5.95594318614718	5.88334888774872	5.80520886122577	5.9918448096122	-0.235220185443858	0.330355906274918	0.641796043873533
Merged-chr10-9722792-4	chr10	9722695	9722895	+	956.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38073.0	NR_038036	620417.0	Mm.378085	NR_038036	ENSMUSG00000111901	Gm6150	-	predicted gene 6150	ncRNA	4.93675913437621	5.34388639515129	5.37627676126808	5.58761492178212	4.81939837844651	4.86006222178946	5.94568711960591	5.42834755942222	0.0205951733425023	0.95833400692177	0.985142778641354
Merged-chr5-102001118-4	chr5	102001012	102001212	+	980.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	68809.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.79837604132084	5.81567638480115	5.61067823576628	5.97294711696508	5.19503784910003	5.1458035655484	5.20173888749676	5.32278825542375	-1.04740652114923	0.000170306913584141	0.00318169968556578
Merged-chr19-28612459-3	chr19	28612358	28612558	+	926.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175459, intron 2 of 10)	intron (NM_175459, intron 2 of 10)	-65766.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	3.60505282636261	3.72389680094695	3.6055525125537	4.08313509984665	3.53181423508041	3.28223281200125	3.2325016023409	3.65530192651239	-1.10191948688641	0.0435558597184392	0.212437040868305
Merged-chr8-115707415-4	chr8	115707310	115707510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025577)	promoter-TSS (NM_001025577)	-516.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.42536882387621	5.25948739320269	6.17467890436644	5.58604570004168	5.60267422284691	5.5736825481697	5.7463691720824	5.94677813900791	0.116138229616784	0.712314091976655	0.884832808376928
Merged-chr2-25626146-3	chr2	25626054	25626254	+	641.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007995, intron 6 of 9)	intron (NM_007995, intron 6 of 9)	1820.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	3.35132123036438	3.45277049971732	3.50794123814133	3.70356997768589	3.19307141910497	3.00046628893645	3.03200168891132	3.2934421572929	-1.4330871616005	0.0131619181880103	0.0957926400775782
Merged-chr8-107324321-3	chr8	107324222	107324422	+	909.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018823, intron 2 of 14)	intron (NM_018823, intron 2 of 14)	30852.0	NM_133957	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	3.55003278572142	3.60356798240268	3.31084861054003	3.83180006643703	3.71573634193506	3.60899782071583	3.48171290996203	3.60210624076143	0.0156067159678008	0.975658030811897	0.991347073148764
Merged-chr14-30627574-4	chr14	30627460	30627660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1352.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	6.66697491118994	6.74283718351692	6.80912557360263	6.58052430034811	6.52378508106022	6.63366983231734	6.45893393422152	6.5863216155442	-0.20893223736444	0.309341475654314	0.621622697166796
Merged-chr10-20662527-4	chr10	20662415	20662615	+	978.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	RLTR28B|LTR|ERVL	62563.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	5.26817429447278	5.15780950126341	5.26907724021013	5.31921966404256	5.38452981355168	4.99031779830749	4.86971118446114	5.23547452735531	-0.200917895792039	0.519005207009468	0.779800557895194
Merged-chr6-54034617-4	chr6	54034490	54034690	+	639.512512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5342.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	3.54991512673434	3.26831633033771	3.37941361310442	3.31168103309698	3.69254419675863	3.61210160399172	3.63732647081637	3.65081603719029	0.910941064415822	0.0603855200255029	0.259567662896025
Merged-chr9-41950884-3	chr9	41950779	41950979	+	789.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126334.0	NM_001357261	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	3.8076697937236	4.0470797511916	4.12411391383611	3.95229248946402	3.4365266052643	3.57555069548835	3.98010534131146	3.52173258586137	-1.03050838304373	0.0363661716495401	0.18964815970713
Merged-chr9-118678465-4	chr9	118678284	118678484	+	872.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	intron (NM_133721, intron 11 of 27)	-33308.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.35123424269889	3.24801588277742	3.65728566010583	3.20826264907956	3.97839328543845	3.98366885624909	3.93129785070908	3.94736314217777	1.8715646086618	9.99658784268388e-05	0.00202951262422817
Merged-chr10-37319278-4	chr10	37319176	37319376	+	945.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-180350.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	5.35406950163115	5.59069670603481	4.71617056337441	4.98842400296736	5.45933675624661	5.60786178676961	4.86439342686888	4.88425320125399	0.0848311090206623	0.825100947299776	0.932930809630366
Merged-chr2-3358124-4	chr2	3358032	3358232	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145921, intron 3 of 7)	intron (NM_145921, intron 3 of 7)	8437.0	NM_145921	99035.0	Mm.13808	NM_145921	ENSMUSG00000026645	Olah	AI607300|E230009B14Rik|Thedc1	oleoyl-ACP hydrolase	protein-coding	4.36591716921947	4.94300343765252	4.99906585210148	4.61477238712311	4.60031068284274	4.49691909034246	4.43949547736971	4.45659895020468	-0.538073420978115	0.156129784638631	0.442015827730217
Merged-chr10-125419034-4	chr10	125418946	125419146	+	668.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90083.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	3.5166750111512	3.66737902897593	3.51712745334952	3.49547189852531	3.73882266485844	3.51081168196969	3.61312486705256	3.90874839378962	0.486577871371009	0.308552346186598	0.620845739286685
Merged-chr3-95653840-4	chr3	95653767	95653967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4854.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	7.64952212139835	7.42852572526714	7.2138000556724	7.2505016983392	7.48188483738662	7.44662185982476	7.42374648872887	7.1386745728569	-0.0114699008653149	0.953536351015146	0.983444766711298
Merged-chr16-58511629-4	chr16	58511426	58511626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	B1_Mus2|SINE|Alu	11900.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	5.92130053067359	5.49253129386462	5.76497866540671	5.1260280690431	5.6870727271706	6.03102689725162	5.84919142657248	5.68695824508683	0.377790390713724	0.215391983927589	0.521564416532806
Merged-chr10-79704414-4	chr10	79704339	79704539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009768)	promoter-TSS (NM_009768)	81.0	NM_009768	12215.0	Mm.726	NM_009768	ENSMUSG00000023175	Bsg	AI115436|AI325119|CD147|EMMPRIN|HT-7	basigin	protein-coding	8.49369318436509	8.68205118506892	8.26970171033341	8.5314795596222	8.76582109951947	8.75091973138895	9.02563298940049	8.55802893995774	0.352366397246033	0.0418152617149982	0.207181436280931
Merged-chr8-34945331-4	chr8	34945227	34945427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 1 of 26)	MTD|LTR|ERVL-MaLR	20363.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	7.15784772718608	7.06559836430135	7.03937396948963	7.48713006751368	7.19242669408141	7.3128850219047	7.05298469239331	7.11935697144919	-0.0595295641552654	0.770497198087635	0.910208520553554
Merged-chr4-148688761-2	chr4	148688665	148688865	+	797.5	f0_balb.idr|f1_balb.idr	Intergenic	B1F2|SINE|Alu	45448.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	3.0868237686106	3.26708533076775	2.98134423606683	2.85733110748294	2.47321961204599	2.46457753501444	2.43831273247032	2.52240136587869	-3.61861953661234	9.68002994240396e-05	0.00197595311520038
Merged-chr8-94995679-3	chr8	94995586	94995786	+	896.7666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018882, intron 1 of 13)	intron (NM_018882, intron 1 of 13)	11287.0	NM_018882	14766.0	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	4.64019286474626	4.36651890706209	4.26312802674703	3.86316267855314	4.12166114403031	3.97638265091181	4.4448351585743	4.01936449177322	-0.366114153682963	0.422052551017953	0.714425732757276
Merged-chr6-134595016-5	chr6	134594845	134595045	+	970.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-28032.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	4.76432434055982	4.83152568304861	5.21370858458724	5.36064792331541	4.99130978672867	5.05867221124022	4.8224601533257	5.0882680199939	-0.177683675180576	0.604067297508729	0.828350269166784
Merged-chr2-112267054-4	chr2	112266941	112267141	+	906.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133649, exon 1 of 25)	exon (NM_133649, exon 1 of 25)	727.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	3.46403546456354	3.774077945008	3.64235014887221	3.58017621841168	3.72612415650091	3.91950982125296	3.62812690866453	4.02093814069688	0.627658693006626	0.182046436828534	0.478744830221339
Merged-chr12-79297294-4	chr12	79297214	79297414	+	993.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252562)	promoter-TSS (NM_001252562)	32.0	NM_009014	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	6.32288268773958	6.29692640939759	5.01757442453543	5.84874198527603	6.22430264008355	6.35472699271921	6.18516778678673	6.07561523682675	0.380448444981239	0.260280565096426	0.572042049219392
Merged-chr7-116626218-3	chr7	116626120	116626320	+	715.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121851.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	3.55095415012215	4.25068827217063	3.76705915578135	3.85385456887557	3.27498544472672	3.6697903223082	3.64874340991573	3.36162864364416	-1.22324640810491	0.0222842877429499	0.137664496428675
Merged-chr19-11518549-4	chr19	11518471	11518671	+	915.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027209)	promoter-TSS (NM_027209)	12.0	NM_027209	69774.0	Mm.436639	NM_027209	ENSMUSG00000024677	Ms4a6b	1810027D10Rik	membrane-spanning 4-domains, subfamily A, member 6B	protein-coding	4.62352339038926	4.45262393086559	4.34342210396553	4.22480282748996	4.4158430248262	4.47206848420162	4.36784587253531	4.42736571350191	0.0350218034703535	0.92594384463097	0.972707719010402
Merged-chr15-32766462-4	chr15	32766345	32766545	+	717.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155440, intron 1 of 1)	intron (NR_155440, intron 1 of 1)	6707.0	NR_155440	105245909.0	Mm.229263	NR_155440	ENSMUSG00000115749	Gm41289	-	predicted gene, 41289	ncRNA	3.6988996783935	3.85615351831223	4.18988631900215	4.06007354728709	4.09625157602148	3.98778568179616	3.99821194168595	3.86483974241669	0.063632449094879	0.885609289353658	0.957045685546015
Merged-chr5-115560531-2	chr5	115560448	115560648	+	890.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007475, intron 2 of 6)	intron (NM_007475, intron 2 of 6)	1081.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	2.60492844881933	2.66742874191922	2.72451220928349	2.37610091559759	2.2948065879078	2.35160762090486	2.59551231363901	2.54000924243359	-0.806753002517683	0.27249258253817	0.58392103703842
Merged-chr15-59614385-4	chr15	59614284	59614484	+	993.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34270.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	5.2240836790377	5.57568628937335	4.97352542051562	5.28810406255588	5.41770689101694	5.2653017595894	5.4616641349131	5.63499025035842	0.289055904668437	0.338098554308596	0.647793189693986
Merged-chr7-28386652-4	chr7	28386555	28386755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026042, exon 4 of 4)	3' UTR (NM_026042, exon 4 of 4)	6035.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	6.78786068078121	6.71967084087527	6.36535978219741	6.11872736268716	6.8768230351642	6.72284845485229	7.09053881694872	6.82503178353077	0.536222027004433	0.0269812140980185	0.156223707927793
Merged-chr11-32455158-5	chr11	32455103	32455303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361561)	promoter-TSS (NM_001361561)	-167.0	NM_001361561	327900.0	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	6.92865293291449	7.25741067990555	7.3785856340819	6.8917744531202	6.75519368733685	7.13273487925214	6.86824036182801	6.59602846731555	-0.382572262330137	0.0933551180528976	0.334202326648717
Merged-chr9-3258860-4	chr9	3258760	3258960	+	929.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-59047.0	NR_027988	114673.0	Mm.422774	NM_053265	ENSMUSG00000042360	4930433N12Rik	-	RIKEN cDNA 4930433N12 gene	ncRNA	5.35400152687052	5.66001919909069	5.47447655698265	5.05963540882399	5.13821258957647	5.36904596951155	5.67903492038953	6.29645293657508	0.503848077837611	0.163984777245887	0.453904654629629
Merged-chr15-27664794-4	chr15	27664709	27664909	+	765.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001242423, exon 2 of 8)	exon (NM_001242423, exon 2 of 8)	16733.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	3.21219404041519	2.93666436488509	3.3840323325574	3.25984340935481	3.38357906632803	3.38536053949367	3.51938927325296	3.21099422225693	0.613617140951859	0.265780352780245	0.577438760598551
Merged-chr18-5334394-4	chr18	5334276	5334476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178722)	promoter-TSS (NM_178722)	63.0	NM_178722	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	8.24451155537125	8.07727876629895	8.1189974492416	8.05324687307455	8.44417094091672	8.26443162937112	8.26851749583253	8.13878403468189	0.212602678147822	0.184261498935894	0.481587325870529
Merged-chr16-43335712-3	chr16	43335614	43335814	+	886.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	84482.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	3.4446490054263	3.12538150138841	3.3447553317878	3.41769340835947	3.07094249492745	3.15795863451952	3.04117025755516	3.28918658504093	-0.780466866321091	0.16447534279791	0.45473647018887
Merged-chr2-120154652-4	chr2	120154539	120154739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133838)	promoter-TSS (NM_133838)	-64.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	8.46860252523768	8.56026500162148	8.28293022039843	8.31820536179611	8.4192014824834	8.54410649179024	8.43073384748491	8.35019553209869	0.0334170981992912	0.830406771697845	0.934980877782147
Merged-chr18-34624574-3	chr18	34624452	34624652	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166406)	promoter-TSS (NM_001166406)	-72.0	NM_001166407	19348.0	Mm.258846	NM_009004	ENSMUSG00000003779	Kif20a	AA415432|Rab6kifl	kinesin family member 20A	protein-coding	5.3869547932257	5.43807886980942	5.15651694467213	5.24564783301601	5.76861381574379	5.62218454565617	5.67807821205592	5.74920515394021	0.691916924881688	0.00968252454283866	0.0771335649473142
Merged-chr7-97977614-3	chr7	97977505	97977705	+	718.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177696, intron 10 of 17)	intron (NM_177696, intron 10 of 17)	57647.0	NM_177696	233537.0	Mm.375772	NM_177696	ENSMUSG00000035582	Gdpd4	4921513O04	glycerophosphodiester phosphodiesterase domain containing 4	protein-coding	3.13426232555354	3.35391107107996	3.06513540478964	3.28520855606708	3.25068274966931	3.37782872164848	3.74884702136572	3.63372599252664	1.01390423830241	0.0665204686716641	0.27488304438783
Merged-chr8-123034812-1	chr8	123034712	123034912	+	555.0	f0_balb.idr	intron (NM_001081379, intron 1 of 12)	B3A|SINE|B2	7472.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	3.08024237900974	3.02435262872482	3.13738537073164	3.01600619557208	3.3297236559266	3.06705644099916	2.88494650717649	2.7517376862401	-0.106313133454339	0.864574920108805	0.949198738078594
Merged-chr12-32378962-4	chr12	32378935	32379135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162903, exon 1 of 1)	exon (NM_001162903, exon 1 of 1)	246.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	6.24283663491252	6.34689316839889	6.67666717717532	6.80809073826752	6.59229597082048	6.50142631036874	6.79345940859276	6.51627612734024	0.0754218095384392	0.750689293568626	0.901855648088396
Merged-chr14-33424282-2	chr14	33424182	33424382	+	777.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310453, intron 1 of 11)	intron (NM_001310453, intron 1 of 11)	-13258.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	3.05512990073196	3.13215030759079	3.35694607302324	3.0005402430898	3.35850031742128	3.35784076049871	3.49318856201357	3.24280794689114	0.866567099836161	0.109000972873211	0.364500952228652
Merged-chr2-34727430-6	chr2	34727308	34727508	+	959.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151469, intron 4 of 26)	intron (NR_151469, intron 4 of 26)	27824.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	3.73396436799798	4.17942979338473	3.85455214926107	3.99328621597993	4.42631308299318	4.53853915241044	4.00003508087681	4.24666121769677	0.914549984980338	0.0356327578089578	0.187430096665963
Merged-chr17-34119911-2	chr17	34119799	34119999	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037970)	promoter-TSS (NR_037970)	1.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	6.07878392769664	6.35662100678646	6.20679216439722	6.00344761925509	6.48854275459603	6.44201546209696	6.52258386803868	6.56658673817666	0.519374655530747	0.0195200884983088	0.125910319820673
Merged-chr17-25984767-4	chr17	25984674	25984874	+	871.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347334, intron 1 of 11)	intron (NM_001347334, intron 1 of 11)	1022.0	NR_151779	50817.0	Mm.216072	NM_015830	ENSMUSG00000037326	Capn15	Solh	calpain 15	protein-coding	4.62195970905131	4.72806792284656	4.21820324950572	3.93962757616424	4.95801186231764	4.40019719395331	4.6006921682343	4.83215526202901	0.692007327286225	0.10283792023306	0.35216269069915
Merged-chr2-26351641-2	chr2	26351541	26351741	+	807.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001037747)	TTS (NM_001037747)	469.0	NM_026828	52838.0	Mm.31239	NM_026828	ENSMUSG00000075467	Dnlz	1110034G11Rik|D2Bwg1335e|HEP1	DNL-type zinc finger	protein-coding	3.47441161407308	3.54492060558856	4.21965002214812	3.37581817409748	3.45191546062179	3.32975303402552	3.3388618627744	3.78781003637828	-0.640815909162186	0.263872008005807	0.575927439526718
Merged-chr13-29838873-3	chr13	29838769	29838969	+	906.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308486, intron 4 of 5)	intron (NM_001308486, intron 4 of 5)	16804.0	NR_131896	68916.0	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	3.65605066365684	3.7343516885254	3.2955450846001	3.80434510486115	3.78869215362239	3.71917064386828	3.64198408060342	3.65451689994051	0.17181209469562	0.729093720685659	0.892424767302202
Merged-chr4-147922979-4	chr4	147922877	147923077	+	817.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011122, intron 10 of 18)	intron (NM_011122, intron 10 of 18)	13799.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	3.59017560283159	3.8330419622325	3.64912098344807	3.91833960891331	3.97516740343116	3.98033829805248	3.93626053917643	3.58882739573046	0.330151565309531	0.483351591908054	0.757806109710285
Merged-chr19-7056740-4	chr19	7056591	7056791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134147)	promoter-TSS (NM_134147)	-77.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	5.68926255834956	5.63625521487252	5.50359940523097	5.41813952282423	5.82834650517335	5.46401461231051	5.82287669683402	5.71075412928147	0.281287171426932	0.294240774000131	0.606535224072776
Merged-chr2-71043526-4	chr2	71043398	71043598	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	MTD|LTR|ERVL-MaLR	12108.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	5.03010028922751	4.97338899438135	5.35005524103098	5.21523445088233	4.76568684556356	4.53989345344688	4.62792510605477	5.18255817861257	-0.686977739024958	0.0496625065367087	0.230755758970747
Merged-chr9-42472237-4	chr9	42472159	42472359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173038)	promoter-TSS (NM_173038)	-1.0	NM_173038	272589.0	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding	6.21196776211385	6.44056053155606	5.93588649194298	6.10433982028249	6.74337252844027	6.76381992402784	6.71279852590842	6.85910539087585	0.85567477053404	0.000110169758505607	0.00220027307538457
Merged-chr8-105345237-4	chr8	105345134	105345334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	2736.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	7.01690498599733	7.38293718301885	6.97942009158081	7.07609464345639	7.1994989797796	7.0897751032682	7.51960669872648	6.92098638009223	0.105846722890428	0.623765673035282	0.839117589085407
Merged-chr3-79089262-4	chr3	79089157	79089357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 11 of 23)	intron (NM_001099624, intron 11 of 23)	55630.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	6.97283602308899	7.29424710245871	6.74530128721456	7.03637808614045	6.37194068652339	6.69785480173465	6.78234129787948	6.69544609408476	-0.556094592796957	0.012567042360137	0.0928010694213291
Merged-chr11-77441768-4	chr11	77441644	77441844	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 12 of 14)	intron (NM_177710, intron 12 of 14)	-22169.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	4.77331621930875	4.38763864213879	4.4944744999895	4.93734361493574	4.68838842168044	4.48356936836898	4.63990903395229	4.99939824826803	0.073560209414566	0.846809432537893	0.942018787399771
Merged-chr4-32657069-4	chr4	32656996	32657196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081392)	promoter-TSS (NM_001081392)	-23.0	NM_001081392	100019.0	Mm.24627	NM_133874	ENSMUSG00000058006	Mdn1	4833432B22Rik|A130070M06|AA958993|D4Abb1e|Gm135	midasin AAA ATPase 1	protein-coding	6.46021124911549	6.36752330387849	5.94650258832683	5.99996995473157	6.54428689892918	6.46302656389446	6.05410841406914	6.45672661035717	0.290539820891736	0.252715902305776	0.563984491060167
Merged-chr1-45947968-3	chr1	45947864	45948064	+	711.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22370.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	3.19327701491457	3.26463900773181	3.25900714396976	3.73373286735217	3.23616914231507	3.37201376198403	3.71752344394962	3.68756696691882	0.398175116745155	0.493710408353932	0.764438087754564
Merged-chr16-33583969-4	chr16	33583757	33583957	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 4 of 11)	intron (NM_001083902, intron 4 of 11)	65262.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	2.7567455604174	2.67724058259949	3.26704870394697	2.58102799180849	2.90363106531274	2.93441364753211	2.93886529792963	2.88749873118397	0.320088776105744	0.629263802192593	0.842098331915745
Merged-chr11-100619667-4	chr11	100619551	100619751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019795, exon 1 of 14)	5' UTR (NM_019795, exon 1 of 14)	517.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	6.59739723712604	6.50875568598187	5.80695240939793	5.90964192848193	6.61723075262806	6.46978425732555	6.83381225803048	6.54776243743853	0.561793502417098	0.0384959859382147	0.196830388408558
Merged-chr1-120122372-4	chr1	120122242	120122442	+	867.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172074, intron 1 of 4)	intron (NM_001172074, intron 1 of 4)	1155.0	NM_001172074	73103.0	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	4.37189767976611	4.15093870771148	4.41543432421035	4.51512562996256	4.19529775883545	4.7056127113976	4.16778456106248	4.60727010945274	0.129631486548215	0.749388773653709	0.90130011692571
Merged-chr12-8509875-4	chr12	8509776	8509976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9867.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	7.47623698204815	7.80979112824263	7.76631652031186	7.86806305345467	7.59859705680636	7.74059819548233	7.90959671915206	7.79190562620682	0.0195892748824848	0.913686261310485	0.967628429778146
Merged-chr4-74222536-4	chr4	74222428	74222628	+	828.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19969.0	NM_001172095	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	3.26143773011126	3.32976849930082	3.50444082532863	3.5315579004523	3.83367707382744	3.50287853271987	3.43500051990039	3.79729356400796	0.770723438290283	0.133833355232853	0.407290794481133
Merged-chr11-69416015-6	chr11	69415930	69416130	+	960.0912480000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2355.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	3.56738723406571	3.83800907166519	3.90867944630539	3.5518272009207	3.79610033357128	3.75261130633521	4.03229927458728	4.58623097735598	1.00011007241962	0.0441015915404521	0.214185806786152
Merged-chr6-17675522-4	chr6	17675371	17675571	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18523.0	NM_001289626	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	4.72655508717289	4.92605735465514	4.91337739038563	5.09976667370599	4.93795377940565	4.82084006840774	4.70550773408347	4.80186871187159	-0.229247067014562	0.490001805527554	0.761990704265616
Merged-chr3-54601290-3	chr3	54601191	54601391	+	944.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91524.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	3.31297926660158	3.19950886264242	3.39780729441354	2.43595378937825	5.34426756590631	5.17765638340843	4.57038787239758	4.85651720889935	8.26740341318946	1.51145672004137e-20	5.46111562821444e-18
Merged-chr7-126584771-4	chr7	126584617	126584817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138310)	promoter-TSS (NM_138310)	-291.0	NM_138310	171504.0	Mm.170665	NM_138310	ENSMUSG00000042759	Apobr	Apob-48r|Apob48r	apolipoprotein B receptor	protein-coding	6.26146279911893	6.18237696278637	6.66954838109964	6.0175023190886	6.3639042945542	6.51299904292554	6.06737542866824	6.51759466288643	0.127475363497132	0.619963117869792	0.836937275098697
Merged-chr14-72689681-4	chr14	72689571	72689771	+	898.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 1 of 25)	L1_Mur3|LINE|L1	20332.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	4.35345636253587	4.75421915096735	3.94777303320529	4.23765295114313	4.57868363539152	4.60978718018275	4.29051368764762	4.11261259913522	0.141655948598868	0.745282280803058	0.899471958747455
Merged-chr6-21949541-4	chr6	21949440	21949640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023626)	promoter-TSS (NM_023626)	-31.0	NM_001311061	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	9.22837555642163	9.25862023622688	9.09326517899282	9.26457807075242	9.17073806302044	9.23020958060332	9.03985708076859	9.08432198845424	-0.100693249169881	0.470574428418814	0.749262196680896
Merged-chr1-86064327-4	chr1	86064241	86064441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027357)	promoter-TSS (NM_027357)	-278.0	NM_027357	70247.0	Mm.280013	NM_027357	ENSMUSG00000026229	Psmd1	2410026J11Rik|P112|S1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	protein-coding	5.96256302042611	5.81714424471704	5.85014760913444	5.56711340921898	6.22462457436472	5.90230214340887	5.99623590748428	5.91522609705602	0.379153316025109	0.139745437935003	0.415685591824798
Merged-chr12-33010217-3	chr12	33010102	33010302	+	921.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56016.0	NM_198710	19027.0	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding	3.96283792720981	3.846193954401	3.91540440400765	3.96601608729609	3.62719730274609	3.70091188979272	3.84946805841008	4.25346546189789	-0.133922813905851	0.773912864837499	0.91166330938482
Merged-chr13-89834643-3	chr13	89834544	89834744	+	980.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31A_Mm|LTR|ERVK	-92132.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	3.09699057403239	3.00114488946162	3.09733987083439	2.39057786011111	4.84046291216614	4.40744388849653	4.67490478892589	4.09585212386467	8.39265556693073	2.81848438986877e-18	7.43025556986923e-16
Merged-chr7-16104144-6	chr7	16104004	16104204	+	874.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025898, intron 1 of 10)	intron (NM_025898, intron 1 of 10)	5524.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	4.34312736630435	4.72578795710281	4.29671301206792	4.75209352925487	4.55624502483683	4.47229997922476	4.27838394552558	4.5136732292801	-0.226128949270919	0.559333120615104	0.803713908920027
Merged-chr14-21812924-4	chr14	21812833	21813033	+	962.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18628.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	4.77591157349243	4.7827427319674	4.43743984990897	4.08542656572722	5.13146657346531	4.87522921338742	4.95814603877634	4.91449335239017	0.927135794423419	0.0141051808717251	0.100519890795807
Merged-chr6-134705901-4	chr6	134705794	134705994	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170479, intron 3 of 3)	intron (NM_001170479, intron 3 of 3)	64954.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	4.19583497308022	4.33792189977507	4.5295157357852	4.58407028518097	4.69800359786091	4.99677407913218	4.73660841745532	4.60791903868776	0.713914139276772	0.0536802609944999	0.241829575780222
Merged-chr14-31376937-2	chr14	31376837	31377037	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 6 of 7)	intron (NM_001347585, intron 6 of 7)	40299.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	3.61791348903004	3.68096074990475	3.72877836564596	3.78543604572822	3.61394003766292	3.73603628890154	3.95135103939444	4.00974907394125	0.35747069499916	0.440582380837691	0.727944976505159
Merged-chr19-32138863-4	chr19	32138766	32138966	+	951.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 7 of 9)	intron (NM_144792, intron 7 of 9)	-35726.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	5.20702902078553	5.38209204482412	5.07665948893676	5.62721422614479	5.11477467690119	4.85859797203767	4.8682917508867	5.35113815213382	-0.538250026867839	0.104848849380183	0.356162844804429
Merged-chr2-33047063-4	chr2	33046967	33047167	+	909.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355201, intron 6 of 29)	ORR1F|LTR|ERVL-MaLR	39390.0	NM_001355202	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	4.92285546209046	4.73191305454008	4.74663746086226	5.13285393332832	4.65209114101613	4.25596605616057	4.64667342569481	4.98462404006637	-0.506186680259634	0.178239396684314	0.474010910390165
Merged-chr6-124661363-4	chr6	124661255	124661455	+	783.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-1749.0	NR_149320	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	3.91175311637025	3.71381972171986	3.8100382056841	3.68854979843122	3.74532275935107	4.13090526643502	4.03358897007429	4.04938673799823	0.604271212559525	0.172240951454375	0.465520150500113
Merged-chr4-97772317-4	chr4	97772205	97772405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	CpG	-5321.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	8.77542638820946	8.82867373054999	8.86417696935409	8.96759553872808	8.76458383905829	8.81082348281291	9.01562617757609	8.4651456414686	-0.105329570745911	0.52879087005436	0.785286988099297
Merged-chr2-155101849-1	chr2	155101749	155101949	+	656.0	f0_balb.idr	Intergenic	Intergenic	-1770.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	3.0440050574512	2.77715932479914	2.87198364561479	2.97873223655672	2.59195979402958	2.98029331803218	2.66577217154633	2.87053934765436	-0.658047147364864	0.311275081257721	0.62330737422436
Merged-chr19-5816125-4	chr19	5816023	5816223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13451.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	7.04443988107104	6.391287346799	6.31275592972114	6.69814099586261	6.43200512918779	6.68466236349423	6.099668860865	6.52069160357049	-0.290450856359744	0.267603050968902	0.57929252653251
Merged-chr9-7571370-4	chr9	7571277	7571477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310717)	promoter-TSS (NM_001310717)	-19.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	6.52237291169109	6.11797462441342	6.52352543497746	6.59424009110931	6.45498790195802	6.23842530822687	6.655836713231	6.64198188897956	0.074824793551067	0.750660065752381	0.901855648088396
Merged-chr6-17637788-2	chr6	17637688	17637888	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 1 of 9)	intron (NM_007604, intron 1 of 9)	778.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	5.03234710366156	5.31448200610507	5.46792399104877	5.22977079998708	5.58508566905089	6.0880231179008	5.49552141204203	5.6966541938569	0.794685408568	0.00718141875131304	0.0620950200801398
Merged-chr8-85499359-3	chr8	85499241	85499441	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 2 of 11)	B3A|SINE|B2	6724.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	3.61175396805348	3.47077131978664	3.51053155226233	3.4204310715962	3.47311524263228	3.51385953895727	3.26835953931605	3.39823161849415	-0.276711467592331	0.583574263655786	0.817221790684748
Merged-chr15-91194756-4	chr15	91194645	91194845	+	966.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-2738.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	5.44627400351427	5.38062406838592	5.17594230194933	5.14134477583185	5.65157294761185	4.88070598751242	5.27737411500945	5.61999570086774	0.213706797674098	0.510644936751747	0.774894383512825
Merged-chr13-30725101-4	chr13	30725023	30725223	+	991.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24110.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	5.3288984779331	5.72698770818503	5.44591022089562	5.06896054862032	5.3165141193366	5.69910789362614	5.27279577894836	5.16454921917998	-0.0512119038431908	0.873366864236133	0.952540293712625
Merged-chr3-59120684-4	chr3	59120584	59120784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287119, intron 1 of 2)	MER20|DNA|hAT-Charlie	10078.0	NM_001287124	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	5.10773201233133	5.4233460642653	5.27379121860524	5.46853027803797	5.27983554715375	5.21391041377111	5.54738250849207	5.27016050943134	-0.0112483883028737	0.969580749153479	0.989034602712618
Merged-chr8-122459401-2	chr8	122459301	122459501	+	836.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013914, intron 1 of 2)	intron (NM_013914, intron 1 of 2)	1291.0	NM_013914	30927.0	Mm.103673	NM_013914	ENSMUSG00000006587	Snai3	AI643946|Smuc|Zfp293	snail family zinc finger 3	protein-coding	3.2046805635429	3.30040131934644	3.2051473918604	2.72258663230861	2.77100345703403	2.78102635828474	3.24469819744972	3.14725000653774	-0.495486071660492	0.455343756606203	0.738895523697633
Merged-chr3-85971140-5	chr3	85971049	85971249	+	835.723816	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	31342.0	NM_001001650	368202.0	Mm.253822	NM_001001650	ENSMUSG00000049013	Prss48	Esspl|Gm1019	protease, serine 48	protein-coding	4.49599536495855	4.22824432551171	4.4576126545937	4.35222940322146	3.83719635995064	4.41658277338139	4.61927976413458	4.19128193742356	-0.225320969605601	0.599176546965709	0.826222659030052
Merged-chr11-20201206-4	chr11	20201080	20201280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008996)	promoter-TSS (NM_008996)	-232.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	9.04744395397799	9.13874170299441	9.33815485355309	9.05201226471129	9.08005560664332	9.3234257547472	9.27293073829628	8.97214983412917	0.0258706362921317	0.870195858678619	0.951261027372314
Merged-chr13-23467031-3	chr13	23466946	23467146	+	909.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1145.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	3.28072951188856	3.49620108815642	3.0862341731544	3.31812159132716	3.66653455178276	3.39332061836974	3.32784363290869	3.44889360407158	0.570566633077288	0.285353002286817	0.597052863099248
Merged-chr16-70385720-4	chr16	70385625	70385825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 2 of 15)	intron (NM_028803, intron 2 of 15)	71776.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	5.72599102558363	5.36628654528734	5.52395573526144	5.48734346989362	5.50916736359452	5.39278621094483	5.80909689335962	5.60003184598245	0.102556491582141	0.710984618845128	0.884240356833917
Merged-chr8-69008052-4	chr8	69007951	69008151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80685.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	6.36903654224928	6.81451804826448	6.7835447976468	6.92602146138429	6.77625506000347	6.58700113390804	6.90704271862438	6.92480892034837	0.0759838096988762	0.732976240237764	0.89428378134871
Merged-chr2-79060528-4	chr2	79060422	79060622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	190844.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	6.28744734441951	6.32364487878642	6.08058746953906	6.89803729888415	6.49411031000901	6.52102121842507	6.40043156305421	6.18439771431504	-0.0756522633243126	0.778957502007221	0.913809930096951
Merged-chr14-55737625-7	chr14	55737537	55737737	+	905.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8047.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	4.00006856200098	3.84732040389444	4.18865526375623	4.49235692740922	3.87008137114388	3.84037352837727	4.21232028425207	4.31058082529766	-0.251509378731748	0.590268575409662	0.820872690719269
Merged-chr2-119758438-2	chr2	119758338	119758538	+	778.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008523)	promoter-TSS (NM_008523)	87.0	NM_206941	17005.0	Mm.1740	NM_008523	ENSMUSG00000027297	Ltk	-	leukocyte tyrosine kinase	protein-coding	2.87160151004159	3.1237221528931	2.87188500942451	2.85692923091763	3.10785304612527	3.46928385412614	3.23475884370057	3.29974633799255	1.37153607548812	0.0171563580402322	0.115304165255132
Merged-chr17-26466921-4	chr17	26466807	26467007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41565.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	5.30763789992281	5.30149363877907	5.12661042301115	5.15269669340099	5.08365036962157	4.9722711157919	5.13363989432319	5.1231217488744	-0.262495841672005	0.377890546336978	0.680571668420308
Merged-chr6-120493811-6	chr6	120493669	120493869	+	793.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033567)	promoter-TSS (NM_033567)	38.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	2.93405144405948	2.7204655499397	2.82125750337006	2.52983848570396	2.68083246575882	2.80400919257441	2.55288490584569	2.62910792017474	-0.404971061370259	0.54629192361981	0.796350145922542
Merged-chr13-31801403-4	chr13	31801300	31801500	+	772.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5246.0	NM_008592	17300.0	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	3.87639992077141	3.88762414119777	3.87696486373908	3.86205961602235	3.77149562047235	3.66341188705562	3.90765273223733	3.82530602250764	-0.231656129780028	0.599783651575838	0.826560500894977
Merged-chr13-103920500-4	chr13	103920405	103920605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289474)	promoter-TSS (NM_001289474)	81.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	8.04986452161079	8.50714412272886	8.35183359229985	8.05119880293626	8.49803807127729	8.44675089038983	8.29668644722585	8.03902159865051	0.104458797870859	0.583719303190307	0.817354007864632
Merged-chr16-20014269-3	chr16	20014169	20014369	+	940.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-31220.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	3.95583402501905	3.6622832896228	4.19265655832282	3.25187637616358	3.48843488940336	3.4788978789711	3.70269643971567	3.66302917379115	-0.669242814756673	0.226594242667988	0.53520075526854
Merged-chr4-48100428-4	chr4	48100312	48100512	+	941.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24507.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	5.0519828843598	4.84981676773838	4.74216882024283	4.77436280080655	4.57680986652879	4.75320766078509	5.0870160224309	4.73906676731198	-0.119129869654858	0.730252699316093	0.893000516342052
Merged-chr11-31732443-3	chr11	31732318	31732518	+	964.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60556.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	3.31094726442219	3.2106574981569	3.23607718572168	3.27125110243903	4.20084724609111	4.07680585412884	4.14030189084474	4.30540442002092	2.80467445680701	4.51743702057111e-08	2.09204066159552e-06
Merged-chr10-100487472-4	chr10	100487354	100487554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110013)	promoter-TSS (NM_001110013)	-107.0	NM_001110013	237500.0	Mm.296805	NM_001033332	ENSMUSG00000036676	Tmtc3	9130014E20Rik|B130008E12Rik|mSmile	transmembrane and tetratricopeptide repeat containing 3	protein-coding	8.2471139868253	8.07503444783884	8.53164312955271	8.53175448585411	8.3702481497071	8.35964536102132	8.53369434188905	8.32282468117568	0.0429145346152028	0.806396418344861	0.925408958667777
Merged-chr8-123983013-4	chr8	123982909	123983109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019552, exon 1 of 13)	5' UTR (NM_019552, exon 1 of 13)	113.0	NM_019552	56199.0	Mm.274243	NM_019552	ENSMUSG00000031974	Abcb10	Abc-me|Abcb12	ATP-binding cassette, sub-family B (MDR/TAP), member 10	protein-coding	7.56303199102399	7.77027426642333	7.49323317243846	7.82875203738785	7.24073317306857	7.33792453300307	7.25908981013618	6.68372102521488	-0.697401579158419	0.000994115060802938	0.0133812624646166
Merged-chr17-23719585-3	chr17	23719423	23719623	+	970.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6813.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	3.16666997825935	3.03975907852798	3.31491069296167	2.71174646873553	2.84627965230199	2.76958413799343	2.86481633097712	2.73556485392207	-1.17359428096702	0.0780815900248752	0.302233373015422
Merged-chr7-90132580-4	chr7	90132477	90132677	+	984.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	2364.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	4.75428213148964	4.71005035941118	4.54993028987681	4.59805432258484	5.03139908322384	4.85115542150908	4.84059042788689	4.86073828315294	0.526878119317166	0.108662076730112	0.363905992263699
Merged-chr2-145934762-4	chr2	145934668	145934868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025820)	promoter-TSS (NM_025820)	-16.0	NM_175280	78774.0	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding	7.00348362424085	6.96476294672933	6.83860299557925	6.93808656242713	7.39539166489125	7.53992142451874	7.28711674757707	7.5723318815323	0.696405485845463	0.000152471756984013	0.0028902229534927
Merged-chr19-46607694-4	chr19	46607602	46607802	+	972.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	8596.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	5.32861574543874	5.36719103598328	5.23262696855464	5.03143384099771	5.87137327705832	5.6506706205801	5.71994784917745	5.35654164542998	0.768056062845968	0.00801265051257131	0.0672775226869845
Merged-chr7-139249076-4	chr7	139249005	139249205	+	957.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098636, intron 1 of 2)	intron (NM_001098636, intron 1 of 2)	623.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	4.18854691878823	4.55172619447267	4.42627223051965	4.28187806238629	4.60686054367482	4.64125655829193	4.56731531569695	4.5858969609299	0.534085846317506	0.140770575223461	0.41732231461186
Merged-chr8-86807859-4	chr8	86807675	86807875	+	636.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61769.0	NM_009172	20437.0	Mm.324553	NM_009172	ENSMUSG00000036840	Siah1a	AA982064|AI853500|Sinh1a	siah E3 ubiquitin protein ligase 1A	protein-coding	3.60531041992618	3.51221414380005	3.6559410897076	3.84902099747227	3.18263609738261	3.43477031337222	3.24579535716825	3.65375226390904	-0.954653399314597	0.0744932100856415	0.29418287842243
Merged-chr11-116397590-3	chr11	116397498	116397698	+	995.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 1 of 18)	URR1B|DNA|hAT-Charlie	15434.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	3.8839151844781	3.57441448515182	3.43267938836836	3.36533290634274	4.63381660647156	4.47872138112434	4.28548697525081	4.38128678536355	2.4372648125639	4.50357607724822e-08	2.08833903324072e-06
Merged-chr4-136016036-3	chr4	136015945	136016145	+	885.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013736, intron 1 of 10)	intron (NM_013736, intron 1 of 10)	5604.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	3.49099272673478	3.36138844417045	3.54389120128654	3.36871726201204	3.1993351342339	3.43408170631947	3.36714709944447	3.6868876104719	-0.0345267215751417	0.947342055740067	0.981132208243319
Merged-chr2-127273957-4	chr2	127273850	127274050	+	897.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139308, intron 1 of 7)	(TG)n|Simple_repeat|Simple_repeat	3721.0	NM_139308	99138.0	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	4.06008359666489	3.90090567814834	3.95914251481133	3.85230472307932	4.45415154065289	4.08270283160274	4.22316043798714	4.36076507238553	0.925891221158341	0.0225677325490107	0.138775369318666
Merged-chr5-107360088-2	chr5	107359988	107360188	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054054, intron 13 of 18)	intron (NM_054054, intron 13 of 18)	28894.0	NM_054054	114642.0	Mm.182836	NM_054054	ENSMUSG00000029279	Brdt	7420412D09Rik|Brd6|Fsrg3	bromodomain, testis-specific	protein-coding	3.02610868653728	3.11927902500246	3.7353464302206	3.19675283311297	3.14783033802525	3.51859620489129	3.2154787559385	3.50422947059664	0.205425938425779	0.728683369399759	0.892191512842823
Merged-chr4-102649140-3	chr4	102649035	102649235	+	639.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	59292.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	3.45178994801758	3.37579667156499	3.58306106269974	3.18425497521366	2.6146802526485	2.76610135674199	2.64875075271729	2.65393126937326	-4.33416339318958	9.38113753551802e-06	0.0002602260283089
Merged-chr10-67378000-3	chr10	67377891	67378091	+	897.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92710.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	3.80162616728207	3.74291870443516	3.74919867026132	3.28386478864544	4.12102967767298	4.24903998684729	3.73378078717919	3.69194304356569	0.934320875692833	0.0620599848318116	0.263477303125186
Merged-chr2-33227494-4	chr2	33227391	33227591	+	727.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011923, intron 1 of 4)	L2b|LINE|L2	11530.0	NM_011923	26360.0	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	3.50528545146759	3.70552247607854	3.85253025630534	4.20444686164701	3.84684416249486	3.97361886592136	3.67643478660327	4.20241802751759	0.21535530930759	0.672227310870835	0.865098520982242
Merged-chr3-115902504-4	chr3	115902405	115902605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027193, intron 4 of 7)	intron (NM_027193, intron 4 of 7)	14322.0	NM_027193	69740.0	Mm.5915	NM_027193	ENSMUSG00000033554	Dph5	2410012M04Rik|AU045680|C80186	diphthamide biosynthesis 5	protein-coding	6.93098164390906	6.67910670520713	6.85232314124198	7.12064883531264	6.89257562478012	6.70282697422498	7.09833667325319	6.88801393125391	-0.0172033715972722	0.935495228252881	0.976592986567772
Merged-chr11-5758006-4	chr11	5757916	5758116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	RMER16_Mm|LTR|ERVK	-4134.0	NR_015577	76508.0	Mm.260203	NR_015577	ENSMUSG00000083844	Ube2d-ps	1600028I17Rik|2210015D19Rik|AI596465	ubiquitin-conjugating enzyme E2D, pseudogene	ncRNA	6.02158353248748	5.93808934949831	6.04340715947774	6.0639528953633	5.67850210452282	5.83951640207758	6.03281728828055	5.95397840619854	-0.232095389016512	0.342878855667746	0.6516462545027
Merged-chr4-116720820-4	chr4	116720738	116720938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146151)	promoter-TSS (NM_146151)	-117.0	NM_146151	230661.0	Mm.482431	NM_146151	ENSMUSG00000033985	Tesk2	-	testis-specific kinase 2	protein-coding	7.86422038800439	8.04494698614916	7.47666569528878	7.66968808445809	7.96475187320296	7.83818674544268	7.72169468415127	7.67246607101503	0.0358166279181357	0.852506995549698	0.944562676072226
Merged-chr16-94236917-4	chr16	94236824	94237024	+	971.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	53367.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	6.15126882466119	5.49526565440701	4.72068098241267	5.44372140319934	5.60904902647939	5.67137434997613	5.44011323298828	5.3756084838894	-0.0278627138448369	0.940673519862963	0.978654793543509
Merged-chr19-55642108-4	chr19	55642027	55642227	+	917.757141	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045318, exon 4 of 4)	non-coding (NR_045318, exon 4 of 4)	60077.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	4.12048962109994	4.238546666896	4.02799092136688	4.00602533868755	4.15062472046963	4.10086570330914	3.91216966711293	3.92561726458665	-0.173233900360374	0.679456648448261	0.868431457681343
Merged-chr10-40093693-4	chr10	40093602	40093802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	48552.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	6.96871371169934	7.25546820309095	6.79031323900675	6.98581604894812	6.97299688226449	7.43244678664027	6.78503830723514	7.00302670540319	0.0733272440651421	0.743376063639989	0.89894073126818
Merged-chr2-160057678-4	chr2	160057562	160057762	+	973.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41009.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	5.30402537979511	4.86035783854978	5.05474963389153	5.15982821043477	5.36485612429777	4.83578389104453	5.30624750071656	5.24324787385394	0.199873580761219	0.533098403224029	0.78845969420029
Merged-chr11-68063409-3	chr11	68063294	68063494	+	735.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018768, intron 6 of 7)	intron (NM_018768, intron 6 of 7)	96936.0	NM_018768	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	3.23345963576101	3.40886643404475	3.34905454418521	3.77971775376225	3.22415625314657	2.99949280270153	3.28059573222343	3.23226938320279	-1.03759553956687	0.0749893110592969	0.295453568686466
Merged-chr6-40476351-4	chr6	40476253	40476453	+	928.1416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212468, intron 3 of 6)	intron (NM_212468, intron 3 of 6)	4885.0	NM_001286663	381760.0	Mm.276356	NM_028358	ENSMUSG00000029911	Ssbp1	2810480P10Rik|G630031O20Rik|MtSSB|mtDBP	single-stranded DNA binding protein 1	protein-coding	4.63563701612446	4.6799361481442	4.5047055600179	5.38652882989881	4.79272905168582	4.48988120538649	4.69519416363938	5.025221088637	-0.223228598637506	0.588389388247685	0.819675135431917
Merged-chr9-95560771-8	chr9	95560702	95560902	+	932.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198414, exon 1 of 1)	exon (NM_198414, exon 1 of 1)	985.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	4.08084896169621	4.23995856835244	4.47063334517603	4.27294888190373	3.97004842284202	4.04395546727947	4.16054466647661	4.53981350576876	-0.197287284004567	0.64055160493379	0.848234068144109
Merged-chr11-86544870-4	chr11	86544770	86544970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199047)	promoter-TSS (NM_001199047)	-63.0	NM_001114334	72508.0	Mm.394280	NM_028259	ENSMUSG00000020516	Rps6kb1	2610318I15Rik|4732464A07Rik|70kDa|AA959758|AI256796|AI314060|P70S6K1|S6K|S6K1|p70/85s6k|p70s6k	ribosomal protein S6 kinase, polypeptide 1	protein-coding	7.28216951322633	7.48893310626463	6.9178238672792	6.76890192919578	7.36450104667805	7.18740822359596	6.90976400404556	7.04281434940711	0.00358862935952898	0.987943481059986	0.995370064932717
Merged-chr7-126894941-3	chr7	126894839	126895039	+	700.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026827, intron 3 of 5)	L2c|LINE|L2	3339.0	NM_026827	68742.0	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	3.57301525025973	4.00399055865397	3.39848198931127	2.93826170896252	3.78977800275327	3.7476855707261	3.50362973108212	3.39673669483794	0.243418742671035	0.686907510360928	0.871975133399566
Merged-chr7-102018266-4	chr7	102018175	102018375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010531)	promoter-TSS (NM_010531)	-120.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	6.72754052184742	7.04539447615717	7.03205373971185	6.71913077518336	6.88943967422593	6.66059277863353	6.99654935931015	6.47772266886641	-0.151360980398468	0.498374401976993	0.76759838054097
Merged-chr4-128756308-4	chr4	128756197	128756397	+	872.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2961.0	NM_001009819	215493.0	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	3.99355452836337	3.6558043674099	3.62759188718549	3.78787499246828	4.17857075560994	3.7464226757669	4.25749663743416	3.68469798811896	0.624415705850148	0.190293177345889	0.489452447654893
Merged-chr3-79299604-1	chr3	79299504	79299704	+	621.5	f0_balb.idr	Intergenic	ID_B1|SINE|B4	-45772.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	2.88998490954652	2.77381964790292	2.89042446086813	3.32548099193001	2.24100558449557	2.37150509781051	2.34689573892314	2.35092239427468	-5.92434561955739	3.74389450887284e-07	1.42430073354922e-05
Merged-chr6-125131862-4	chr6	125131765	125131965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138747)	promoter-TSS (NM_138747)	-18.0	NM_138747	110109.0	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	7.67824205846156	7.81259963976755	7.45279633494591	7.48454150042056	7.78759917467236	8.05568870965675	7.53858510846099	7.68255822081416	0.217915671236774	0.260436540807365	0.572268147713191
Merged-chr17-44664094-3	chr17	44663991	44664191	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271627, intron 4 of 7)	intron (NM_001271627, intron 4 of 7)	72085.0	NR_073425	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	3.76997360931244	3.52758615115951	3.91242358249692	4.47959463539787	3.31303741284188	3.33746661296166	3.35272714789427	3.71733313793142	-1.70695724108852	0.00307116998604099	0.0325738054591583
Merged-chr1-80613581-4	chr1	80613475	80613675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 4 of 55)	intron (NM_175291, intron 4 of 55)	51777.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	5.61250357964376	5.76569367132713	5.93714753299508	5.58713334648119	5.47300633254368	5.76182760070991	5.32452990902666	5.60952357896243	-0.299995961881942	0.277651726508139	0.589700641340894
Merged-chr9-61032299-4	chr9	61032224	61032424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15255.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	4.97380363205945	5.59867549370334	5.08901794326055	5.09715927848146	5.64839527933383	5.86151712209668	5.43879475815407	5.19068053179693	0.60903101728057	0.061544122031533	0.262519236256882
Merged-chr11-22008211-4	chr11	22008107	22008307	+	906.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252515, intron 23 of 24)	intron (NM_001252515, intron 23 of 24)	-6556.0	NM_011023	18423.0	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	4.2018838357486	3.94267567649367	4.66062478382902	4.27543509135934	3.61081162137815	4.33095199155557	4.46763089521934	4.00210929985198	-0.376577753792953	0.442125911427388	0.728953187628121
Merged-chr6-29868073-2	chr6	29867973	29868173	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347084, intron 3 of 17)	intron (NM_001347084, intron 3 of 17)	8477.0	NM_001171001	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	2.84259832174437	2.89848585680337	2.84295110540852	2.71989341957651	2.72340107533643	2.74964769891311	3.00199427744262	2.71308992114284	-0.0996612420371805	0.873475328494916	0.952619493264257
Merged-chr1-128614676-2	chr1	128614546	128614746	+	909.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22347.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	4.08636132806212	3.79174215009752	4.21640770434802	4.31704753046862	3.75872937164879	3.71562647831446	3.87531099187365	4.29293879832998	-0.522421515392379	0.268391216821649	0.580107684368438
Merged-chr18-80151775-4	chr18	80151620	80151820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175028)	promoter-TSS (NM_175028)	-238.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	7.32474284150912	7.71808460278138	7.46709566344169	7.25113878845544	7.75256588987015	7.95376594425206	7.4492091174718	7.48093517670809	0.303028014291772	0.143154621942793	0.421301696653686
Merged-chr1-153489354-4	chr1	153489286	153489486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1726.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	6.83050582553951	6.95396126000187	6.76015793319123	7.33009307562031	6.75494715965718	6.83008388011514	6.72577873092478	6.79874209114499	-0.324418508663091	0.141506468910459	0.418562539502059
Merged-chr2-163535122-4	chr2	163535019	163535219	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312906, intron 1 of 10)	intron (NM_001312906, intron 1 of 10)	6602.0	NR_027970	68314.0	Mm.46190	NM_197983	ENSMUSG00000046840	Hnf4aos	0610008F07Rik	hepatic nuclear factor 4 alpha, opposite strand	ncRNA	5.13420168086214	5.32176986891171	5.06952761578713	5.29420775697059	4.96109018015643	4.94671941032493	4.86630134813533	5.22379291320654	-0.406183171905588	0.190387353219133	0.489544881684295
Merged-chr11-75514501-3	chr11	75514409	75514609	+	858.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004157, intron 3 of 10)	intron (NM_001004157, intron 3 of 10)	968.0	NM_001004157	380713.0	Mm.10486	NM_001004157	ENSMUSG00000038188	Scarf1	AA986099|SREC|SREC-I|mKIAA0149	scavenger receptor class F, member 1	protein-coding	3.39936221158835	3.54019918424331	3.08619595031482	3.28943657773456	3.33229336899316	3.67441260871373	3.38653499471133	3.34100066238059	0.341055348049306	0.525043334207143	0.783229855070132
Merged-chr17-55931871-5	chr17	55931745	55931945	+	874.5200199999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	13414.0	NM_146249	240120.0	Mm.441018	NM_146249	ENSMUSG00000062101	Zfp119b	-	zinc finger protein 119b	protein-coding	3.95467320545215	3.66349728878525	3.90866598127266	3.62876519259722	3.60750798554684	3.93125789702482	3.68864039366777	4.08292199698533	0.142646419733082	0.763420432548579	0.907170333361858
Merged-chr9-44587482-4	chr9	44587393	44587593	+	962.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17399.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	4.76471191014635	4.97284802084749	4.76554086696721	3.73172024090235	4.32242542598625	4.37281139629866	4.31761241025494	4.02501528064669	-0.849270947189726	0.082356518755956	0.31157939026949
Merged-chr8-111546455-3	chr8	111546364	111546564	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	8121.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	4.10259908865421	4.2957203392929	4.22027935777436	3.9110750822685	3.14339761440918	3.4690595948481	3.47405888625385	3.4847743490312	-2.49130301723615	6.30600338423498e-06	0.000182535589624425
Merged-chr11-51689092-1	chr11	51688992	51689192	+	1000.0	f0_c57.idr	promoter-TSS (NM_025319)	promoter-TSS (NM_025319)	-458.0	NM_025319	66050.0	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	6.31298609932426	6.42337074759838	6.13170669608949	6.36177081001998	6.54292761209268	6.75959566954645	6.4067962674637	6.40053053525361	0.318269706779319	0.15305446843013	0.437555330104179
Merged-chr10-10555376-4	chr10	10555280	10555480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	2827.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	6.17822885912136	6.39520695522757	5.80495716556878	6.02352966487746	6.00453154944427	6.40926038215599	5.8253972475118	5.69420423200306	-0.168866408413983	0.547138399107621	0.796726010312419
Merged-chr13-107700431-4	chr13	107700318	107700518	+	893.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13021.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	4.8241567476695	4.44276183051288	4.38261373626242	4.82857052045195	4.44484589261123	4.73554055859485	4.83474402322634	4.63953244352641	0.0361937732689498	0.922823733436092	0.971413012934631
Merged-chr6-29272563-4	chr6	29272463	29272663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023516)	promoter-TSS (NM_023516)	-63.0	NM_023516	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	8.94288015952733	9.21899655969475	9.10232927605145	8.99644796505703	9.14492124947114	9.34805315949005	9.19338769584779	8.841394274712	0.0931481678893394	0.572020841276345	0.811040824294032
Merged-chr2-23039808-1	chr2	23039708	23039908	+	1000.0	f0_balb.idr	intron (NM_001077190, intron 1 of 10)	CpG	433.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	6.11119428978915	6.44781106083532	6.26154952927303	5.93006576664108	6.66858024982096	6.99652937823111	6.86132430037965	6.68041031233663	0.89976511106326	0.000110879769418915	0.00221073140265237
Merged-chr2-131254159-4	chr2	131254063	131254263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7845.0	NM_001355681	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	5.61349739725502	5.54456595953253	5.20682213628976	5.25321804352954	5.37841592840492	5.48207359580621	5.45588507595855	5.75142074563603	0.197042066511814	0.497236868497505	0.766982020988234
Merged-chr14-55635760-4	chr14	55635669	55635869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024267)	promoter-TSS (NM_024267)	-85.0	NM_024267	75751.0	Mm.27546	NM_024267	ENSMUSG00000002319	Ipo4	8430408O15Rik|AA409693|Imp4a|RanBP4	importin 4	protein-coding	7.58590976051731	7.62590665103211	7.01965738827089	7.61252968811207	7.4830305164438	7.56915822223213	7.48831376852993	7.51116124096369	0.0261361122809781	0.895847970546982	0.960979922829742
Merged-chr11-115083572-4	chr11	115083484	115083684	+	866.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7847.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	4.09719217402472	4.152198587827	3.84965601874907	3.95355379596223	4.03859955030655	4.12710599505294	3.83463658176065	4.13957824969199	0.063888432085467	0.880410614618355	0.95517036814656
Merged-chr1-35972411-4	chr1	35972331	35972531	+	917.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95969.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	4.54750751237367	4.39615142696374	4.78494332273018	5.19506035208545	4.44655372460525	4.95652545726448	4.72576759536967	4.50136023327996	-0.250920386976357	0.537075597839325	0.790923655782789
Merged-chr3-59206785-4	chr3	59206608	59206808	+	978.857178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	4174.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	5.48850717642787	6.0749115310092	5.3112574681359	5.59686762704576	5.45229663467424	5.57917661494389	5.34667707188101	4.94287400779388	-0.52094453798891	0.11162706631416	0.369197665218884
Merged-chr7-123207663-4	chr7	123207547	123207747	+	936.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7219.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	4.29610140047046	4.37635264703903	4.04865046284815	4.42635811823433	4.24073158057148	3.99826424479423	4.52102145342522	4.80618780501933	0.288674813205529	0.501384264182888	0.769203095317685
Merged-chr17-48198602-4	chr17	48198497	48198697	+	819.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31340.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	3.62060426866391	3.60822640441042	4.23684259612827	3.66321026475631	3.78593481420388	4.69377332876005	4.08869528364729	4.01139766690965	1.00201037920383	0.0502299409120779	0.232465342274434
Merged-chr8-14842409-4	chr8	14842305	14842505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 14 of 15)	intron (NM_172910, intron 14 of 15)	-46131.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	5.95141189386709	6.44199283498243	6.40546596379678	6.78741176620424	5.98508864161701	5.51363928835113	6.13789780083052	6.16517314771099	-0.711278882496822	0.0137473439966006	0.0987010488535436
Merged-chr2-150666024-3	chr2	150665940	150666140	+	826.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080575, intron 1 of 13)	intron (NM_080575, intron 1 of 13)	-1454.0	NR_040331	109344.0	Mm.440012	NR_040331	ENSMUSG00000087406	E130215H24Rik	-	RIKEN cDNA E130215H24 gene	ncRNA	3.99663237689883	3.83198325639184	4.16932377460628	4.56338162375346	3.47029625176253	3.3997367906572	3.67222165976414	3.84875310847272	-1.68671649749818	0.00124918584233485	0.0160933572980185
Merged-chr16-3884580-4	chr16	3884482	3884682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029090)	promoter-TSS (NM_029090)	-37.0	NM_029090	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	7.85506596661346	7.6107357667533	7.49138368505917	7.74710795809662	7.64231731177407	7.76155439955657	7.86759615610631	7.49581225431736	0.0154248547796596	0.932620473026685	0.975722604390767
Merged-chr19-4305230-2	chr19	4305130	4305330	+	996.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_130863, intron 1 of 21)	intron (NM_130863, intron 1 of 21)	992.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	2.92008409353806	2.91580209042567	3.03390629663276	2.5251454208279	2.87595300317162	2.69042428625596	2.96634576957531	2.72806576987104	-0.157504500332628	0.813431666063784	0.927857767644014
Merged-chr5-129940950-4	chr5	129940846	129941046	+	979.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_B_Mam|LINE|RTE-X	-1163.0	NM_001001327	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	5.08016740536829	5.15346866178871	5.14655322783596	5.20763974358706	5.15078716472191	5.38078387351688	4.83887451973037	5.04353680074873	-0.0675106367321895	0.827679703000997	0.933903677361406
Merged-chr10-100016623-3	chr10	100016523	100016723	+	901.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347156, intron 1 of 8)	CpG	802.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	4.05300567519215	3.80492677663237	3.92004407462644	3.74045851689293	3.9645175933835	3.45272133885454	3.85575785377952	3.82021220086807	-0.235173436985228	0.62122747800078	0.837757076551181
Merged-chr13-51848080-4	chr13	51847980	51848180	+	972.970215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011817, exon 4 of 4)	3' UTR (NM_011817, exon 4 of 4)	1405.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	4.46323703247903	4.73292580300614	4.46390949551928	4.83224700400635	5.02667809678043	5.48175788244634	5.17874548006737	4.88379979801299	0.997528736927971	0.0053825371930463	0.0501536346202177
Merged-chr5-64229163-4	chr5	64229056	64229256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	MLT1F2|LTR|ERVL-MaLR	-1201.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	6.58013095486898	6.747299251913	7.35481765718789	7.45389059180182	6.26618325973155	6.79302688112376	6.93673082105217	6.73568619692521	-0.554749162732121	0.0454427123011393	0.218325188245342
Merged-chr6-3386807-4	chr6	3386695	3386895	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010156, intron 1 of 1)	intron (NM_010156, intron 1 of 1)	12776.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	5.49631881018654	5.45847973873316	4.98377802526578	5.45028643219153	5.81893519873493	5.64456001107531	5.62764805201701	5.95980383161555	0.67748925975203	0.0175222289474026	0.117021461272956
Merged-chr12-80435191-4	chr12	80435106	80435306	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177267, intron 1 of 8)	CpG	1395.0	NM_177267	320808.0	Mm.220310	NM_177267	ENSMUSG00000049106	Dcaf5	9430020B07Rik|AI325023|AI430035|AI848110|AW124614|BCRG2|BCRP2|Wdr22	DDB1 and CUL4 associated factor 5	protein-coding	5.15969868519979	5.55016525651682	4.97892197257395	4.52434183309273	5.65263859174628	5.52419139580175	5.43366140053906	5.50998657997172	0.790329122851979	0.0240559852150378	0.144754023542904
Merged-chr10-59263181-4	chr10	59263085	59263285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41263.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	6.25871322553958	6.35180941490626	6.5130333187324	6.47443336453628	6.83985141830068	6.4954122760878	6.44670536859658	6.50838108705563	0.272098196809969	0.2235912878886	0.531687578278913
Merged-chr17-21845827-4	chr17	21845711	21845911	+	864.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029281)	promoter-TSS (NM_029281)	-52.0	NM_029281	75424.0	Mm.271252	NM_029281	ENSMUSG00000069743	Zfp820	2610036F08Rik	zinc finger protein 820	protein-coding	4.14149574840357	3.76601079438651	4.01305361000263	3.82984024105153	3.96124067220464	3.76718223142888	4.03931612999463	3.64686706890068	-0.195808573202932	0.669032248959686	0.863357017638244
Merged-chr15-34587521-3	chr15	34587445	34587645	+	663.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145469, intron 6 of 10)	intron (NM_145469, intron 6 of 10)	-87528.0	NR_045883	71637.0	Mm.410827	NR_045883	ENSMUSG00000115526	4930413F20Rik	-	RIKEN cDNA 4930413F20 gene	ncRNA	2.07878122446394	2.30164157467799	2.31180257582801	1.9880709194228	2.30630553326871	2.68123022701594	2.50019704490803	2.44635951124325	1.96013760825064	0.013168645009892	0.0957926400775782
Merged-chr10-5805604-4	chr10	5805535	5805735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025995)	promoter-TSS (NM_025995)	-170.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	8.82251040407998	8.84473612566965	8.53794366450311	8.87542875770652	8.90575386123984	8.99788010757217	9.18301891668246	8.74433769702887	0.232240773379672	0.163693198593178	0.453490592888819
Merged-chr3-53491903-2	chr3	53491803	53492003	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153156, intron 1 of 6)	B3|SINE|B2	3110.0	NM_153156	229277.0	Mm.222810	NM_153156	ENSMUSG00000027744	Stoml3	Epb7.2l|SLP3|sro	stomatin (Epb7.2)-like 3	protein-coding	3.29836615368493	3.02225574106125	3.118552107932	3.15949545322362	3.17526478255506	3.35459934745312	3.28583172325672	3.55003374792276	0.70802133209053	0.193067999720377	0.493177360563313
Merged-chr4-107876196-4	chr4	107876068	107876268	+	863.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033496, exon 21 of 21)	non-coding (NR_033496, exon 21 of 21)	-3587.0	NM_001282737	17149.0	Mm.808	NM_001282737	ENSMUSG00000028609	Magoh	Mago-m|Mos2	mago homolog, exon junction complex core component	protein-coding	4.23557464882865	4.26689791664275	4.0549255540953	3.82044378438036	4.24034832439853	4.12894955581032	4.17443113563421	3.89786583936373	0.0713064776297417	0.869033114677487	0.950890741040292
Merged-chr2-148732468-4	chr2	148732388	148732588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019632)	promoter-TSS (NM_019632)	-68.0	NM_019632	17957.0	Mm.274308	NM_019632	ENSMUSG00000027438	Napb	Brp14|E161|I47|SNARE|b-SNAP	N-ethylmaleimide sensitive fusion protein attachment protein beta	protein-coding	6.87456929974417	6.68302643610019	6.97631184097634	7.17536573389336	6.4802619374705	6.2399749597209	6.87934282275744	6.7031990966946	-0.498324058277522	0.0353530365063112	0.186565375554769
Merged-chr1-118498496-4	chr1	118498407	118498607	+	961.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 9 of 39)	intron (NM_001359330, intron 9 of 39)	-39242.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	4.51479519467221	4.56536972729026	4.07155514422375	4.79293108218529	4.76980596163412	4.3647862522188	4.53568408189105	4.87377076060672	0.276107006150273	0.498460790598175	0.767631774426384
Merged-chr7-30280469-4	chr7	30280386	30280586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146186)	promoter-TSS (NM_146186)	-65.0	NM_146186	233064.0	Mm.271677	NM_146186	ENSMUSG00000037020	Wdr62	2310038K02Rik|b2b1508Clo	WD repeat domain 62	protein-coding	7.25503325097089	7.64718614375185	7.02985316486925	6.7505779418541	7.58958438289854	7.40059462568677	7.57677584057474	7.39521110309084	0.388373412070214	0.0979710106869784	0.342997918652436
Merged-chr4-57957587-6	chr4	57957542	57957742	+	915.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1231.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	3.92738941857247	3.89841986905096	4.06537809566352	3.89552767841124	3.84443135215254	3.83630166842761	4.08921673241636	3.71653710427754	-0.185168974277736	0.673737611476964	0.86586684339396
Merged-chr1-135368389-4	chr1	135368276	135368476	+	994.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053106)	TTS (NM_053106)	6687.0	NM_175259	77552.0	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	5.02035348297051	5.15647487274302	4.77374522685986	5.26640015539262	5.81919983905425	5.30669116737612	5.35332903354511	5.67834529753718	0.859332577729847	0.00724078642157221	0.0624339111691203
Merged-chr18-5986608-4	chr18	5986506	5986706	+	855.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	149492.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	4.28192183875534	4.68913101384721	4.04060541426133	4.39695078861072	3.56408123259514	4.31912755510392	4.46466807859439	4.18851013202201	-0.488886115024045	0.314898330723268	0.626830096069788
Merged-chr2-25224839-4	chr2	25224735	25224935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146116)	promoter-TSS (NM_146116)	-133.0	NM_146116	227613.0	Mm.227260	NM_146116	ENSMUSG00000036752	Tubb4b	4930542G03Rik|Tubb2c|Tubb2c1	tubulin, beta 4B class IVB	protein-coding	9.16432998718706	9.47535180610448	9.2363852675281	9.14198893429647	9.069339327574	9.20323721291019	8.99243207156337	8.98748432276255	-0.240958299022962	0.115035187736244	0.37538953609823
Merged-chr9-77858649-4	chr9	77858550	77858750	+	896.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-58715.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	4.309435030432	4.48388754672067	4.26410879392709	4.87615958313916	4.25258422769325	3.81156749069633	4.19833799243761	4.69343244295644	-0.562477479789874	0.224370939206762	0.532722875406055
Merged-chr15-84212291-3	chr15	84212187	84212387	+	674.377747	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178614, intron 14 of 14)	intron (NM_178614, intron 14 of 14)	-19756.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	3.17095359451129	3.39229415907998	3.49450613349215	3.04297279881497	3.16605700428926	3.08319271927999	3.21906278069239	3.28657605740423	-0.332745290313999	0.557138866679094	0.802394360861461
Merged-chr11-93994734-2	chr11	93994634	93994834	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1357.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	2.89255213073994	2.93521126647041	3.36720027757185	3.09525991812282	3.02480328169235	3.13876022591575	3.25048024347772	3.31464439840032	0.384190650466282	0.511411347908699	0.775379647960323
Merged-chr17-84719304-1	chr17	84719204	84719404	+	570.75	f0_balb.idr	intron (NM_028233, intron 30 of 37)	intron (NM_028233, intron 30 of 37)	36183.0	NM_026180	67470.0	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP binding cassette subfamily G member 8	protein-coding	3.67830570047643	3.57090596791603	3.81418351582361	3.38010639316641	3.30074838456568	3.12039654921253	3.56475756179826	3.41332642939693	-0.861860491230515	0.114201722546759	0.373837784954674
Merged-chr2-5951048-4	chr2	5950947	5951147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081132)	promoter-TSS (NM_001081132)	-422.0	NM_001081132	326622.0	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	7.22898982816808	7.10386901732392	6.61917353890553	6.98068515493003	7.546292526278	7.4900940751154	7.33569936790253	6.93627889886451	0.475059849332357	0.0363393862890082	0.189591818270565
Merged-chr12-35799448-4	chr12	35799363	35799563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104345.0	NR_045050	71581.0	Mm.100110	NR_045050	ENSMUSG00000113985	9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	6.40012751286939	6.91404351273549	7.4949133421335	6.6603204285674	6.10715505626688	6.27525753979113	6.15176224049115	6.11287712848526	-1.11913618309398	7.06747296193516e-05	0.00151477162889968
Merged-chr19-37146348-4	chr19	37146207	37146407	+	878.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 2 of 10)	B1F1|SINE|Alu	-27536.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	3.86146400084814	3.84311401777575	3.91134139878166	4.21170743144037	3.90578963042071	3.69911874295229	3.68780537405707	3.95644727325027	-0.449135560044668	0.330253901569354	0.641693076182814
Merged-chr10-84060755-3	chr10	84060656	84060856	+	950.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152790, intron 2 of 4)	intron (NR_152790, intron 2 of 4)	39941.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	3.45621054797242	3.1327183889546	3.40670038201861	3.58843531505443	3.07654731310548	3.09689707462779	3.17295566395544	3.05546730070454	-1.21133866529718	0.0349426961276183	0.185099811540355
Merged-chr3-9000540-4	chr3	9000438	9000638	+	857.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	RMER6A|LTR|ERVK	3666.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	3.91651109667299	3.93539896865434	3.7564366140475	4.14477462128026	4.004234156757	3.75528369389567	3.99675011335011	4.22541894703314	0.128206667530718	0.775343378765471	0.912320643528997
Merged-chr5-147063944-1	chr5	147063844	147064044	+	1000.0	f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	12628.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	4.04110192988616	4.42262448372305	3.95839738410974	3.80458494588678	3.02982545413344	3.19323570349243	3.06568098836303	3.29966305043767	-3.66401926512732	1.47021697284361e-07	6.09130232305211e-06
Merged-chr7-43608192-4	chr7	43608100	43608300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355131, intron 1 of 3)	intron (NM_001355131, intron 1 of 3)	1031.0	NM_028913	74400.0	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	6.43915930655119	6.82668122366252	6.79546959963122	6.51153550826139	6.39282868879868	6.19700742651767	6.22431262212394	5.96470356330308	-0.646726338826872	0.00646552049444421	0.0573612468246348
Merged-chr5-64204188-4	chr5	64204151	64204351	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-26106.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.23551187420369	3.97723926496695	4.87336606892661	4.82656254067231	4.38299852348679	4.31436207789823	4.31062581807026	4.23359214350709	-0.527930469413645	0.235560494218947	0.545550869330724
Merged-chr10-29361367-4	chr10	29361263	29361463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110198, intron 1 of 3)	(A)n|Simple_repeat|Simple_repeat	1079.0	NM_026518	68031.0	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	6.9495289893755	6.81953905043771	6.91152052034866	6.85585824445316	7.09044286623064	7.02007634558762	7.06065384601227	6.95863407567853	0.21548406511134	0.246981639715086	0.558168726560377
Merged-chr19-11858142-5	chr19	11858046	11858246	+	881.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2195.0	NM_001011524	258227.0	Mm.377385	NM_001011524	ENSMUSG00000060556	Olfr1418	MOR266-5	olfactory receptor 1418	protein-coding	2.57341021367341	2.5878477302844	2.63406811764333	2.69712960672362	2.17773157205785	2.40152216364906	2.21776054171707	2.57240144886986	-1.69037287691929	0.0354988636802198	0.187002191969684
Merged-chr3-9609151-3	chr3	9609060	9609260	+	764.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 1 of 8)	CpG	925.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	3.53822447716581	3.658209912715	3.37039230540258	3.62167324180378	3.76924422194831	3.3559050306474	3.35860320440125	3.30755048337432	-0.265437018038814	0.618139696412075	0.835863676650469
Merged-chr6-140610330-4	chr6	140610234	140610434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-12329.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	6.74498481374187	6.99134439024982	6.88689692529081	6.89831745239844	7.09377697150016	6.731485641421	7.02503812995837	6.63267572494419	0.0128480509060671	0.951447957172087	0.982762028465005
Merged-chr6-116669710-3	chr6	116669626	116669826	+	903.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	B4A|SINE|B4	4110.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	3.49948499605675	3.4271861991095	3.71802321617026	3.05318937339529	3.80247632431851	3.93742505408126	3.65125297745601	3.71575815287555	1.10852486176284	0.034509784510367	0.183804269597508
Merged-chr2-156316606-1	chr2	156316506	156316706	+	669.0	f1_balb.idr	intron (NM_027585, intron 1 of 12)	intron (NM_027585, intron 1 of 12)	-3902.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	2.85179867888513	2.76602940994825	2.92146693750961	2.39553844742961	3.21262619114554	3.28504302556971	3.0977112117451	3.4202996453702	2.33030913610847	0.000542748057058954	0.00824770793198106
Merged-chr5-137786304-4	chr5	137786187	137786387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_144913, exon 1 of 4)	5' UTR (NM_144913, exon 1 of 4)	414.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	6.89812112461993	7.17715346635071	6.59634245417551	6.46773059629607	7.26806805699795	7.43576646767067	6.97954619103343	6.88090200321931	0.488814587317772	0.0467978677953596	0.222409389851499
Merged-chr10-19915489-4	chr10	19915396	19915596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7822.0	NM_001161825	18634.0	Mm.338363	NM_008822	ENSMUSG00000020003	Pex7	MmPEX7	peroxisomal biogenesis factor 7	protein-coding	6.37147443145084	6.6330446138377	6.47763016462215	6.53408611012152	6.46590943963686	6.45463750807085	6.58660452085787	6.31229332823187	-0.0777280455521266	0.716049357765499	0.886371813543908
Merged-chr6-53571939-4	chr6	53571844	53572044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-1430.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	6.48071359882254	6.65839942934688	6.39262006496781	6.71344374843673	6.72918221858751	6.58794899786922	6.73838216492368	6.45989235922103	0.0831499112197465	0.699973249919328	0.878998552556505
Merged-chr11-3409234-4	chr11	3409133	3409333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010718)	promoter-TSS (NM_010718)	5.0	NM_010718	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	6.04602674044101	5.98751658232139	5.75120058011462	6.11151101255167	5.97704485787122	5.70688591347282	6.09428928456109	5.55393722819559	-0.210441552768538	0.428594790970024	0.71961368508163
Merged-chr9-77660648-2	chr9	77660548	77660748	+	859.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172925)	TTS (NM_172925)	23916.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	3.18983079831296	3.18810576064461	3.2496481490849	3.81104069898897	3.00813491494197	3.23854398607898	3.11760660382869	3.24795618946445	-0.935229817809002	0.121913649299657	0.386913737384038
Merged-chr1-166153579-4	chr1	166153451	166153651	+	738.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021610, intron 3 of 6)	intron (NM_021610, intron 3 of 6)	23330.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	3.77325023214143	3.43008321025588	3.82573827292133	3.86563275434818	3.82250134143527	3.83909685689713	4.03926505274231	4.05530382586729	0.566824042820236	0.223416557381425	0.531494362386812
Merged-chr18-77767814-4	chr18	77767692	77767892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146089)	promoter-TSS (NM_146089)	7.0	NM_146089	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	7.08992354225996	7.24594278449547	6.88524979933325	7.36308972426125	6.96421495040344	7.02020231277541	7.26207735713013	6.98747705573133	-0.150421502945219	0.464662697902137	0.745523090592339
Merged-chr2-5613804-4	chr2	5613692	5613892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	62254.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	5.51154973197061	6.2422919807911	5.85294240135922	5.55967134691781	5.98679956270398	5.90818706727403	5.70345013461012	5.59556202779309	-0.0132688068143738	0.964341921637584	0.987309283922085
Merged-chr10-75667593-10	chr10	75667541	75667741	+	999.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 29 of 36)	CpG	-23633.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	5.33175334457419	5.52962315692649	5.90932214668583	5.53508805822836	5.18370257195468	5.30716917164891	5.68483862442046	5.68620890524151	-0.19197969424617	0.529764156030337	0.785945284548821
Merged-chr8-83104218-4	chr8	83104158	83104358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-61094.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	7.15406448845761	7.26528568068282	6.95175546789715	7.00861597151761	6.8916908495384	7.02033169768192	6.82252573597408	6.93378121283918	-0.250934003073984	0.196270670868725	0.497253962689623
Merged-chr2-19120111-4	chr2	19120026	19120226	+	924.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78992.0	NM_001271563	70882.0	Mm.276696	NM_001081083	ENSMUSG00000037683	Armc3	4921513G22Rik	armadillo repeat containing 3	protein-coding	4.84627161559288	4.46354400593888	4.4517733670658	4.73181656716889	4.63356270401438	5.0169505669696	4.68110556822729	4.62177498475584	0.217928589778935	0.545551534359913	0.795945900838425
Merged-chr7-4131310-2	chr7	4131210	4131410	+	941.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001305822, exon 10 of 14)	exon (NM_001305822, exon 10 of 14)	5616.0	NR_033548	100037396.0	Mm.447887	NR_033548	ENSMUSG00000085886	D030047H15Rik	Gm15924	RIKEN cDNA D030047H15 gene	ncRNA	3.19659351606979	3.48080506765732	3.37835898042422	3.01132042335169	3.3425044440822	3.43570899333002	3.24847641638608	3.72030076854836	0.618017025640422	0.265217847338627	0.576971825413861
Merged-chr8-108625806-3	chr8	108625724	108625924	+	686.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41147.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	3.80189126503386	3.81612380528756	3.52925515996865	4.17662263795815	3.27129888356967	3.92325470446564	3.63118179942657	3.64345850490106	-0.694442855268205	0.194357451157574	0.494755332451119
Merged-chr15-98894135-3	chr15	98894054	98894254	+	960.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007857, exon 3 of 3)	exon (NM_007857, exon 3 of 3)	4386.0	NM_007857	13363.0	Mm.324688	NM_007857	ENSMUSG00000023000	Dhh	C78960	desert hedgehog	protein-coding	3.75891630979991	3.65920081484991	3.40735082909119	3.57515651666866	3.78807643101654	3.88035499349688	3.5813055203627	4.22490839723771	0.832159491481869	0.0876252909507821	0.322830258001331
Merged-chr12-17693135-4	chr12	17693039	17693239	+	823.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	2330.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	3.86694344370115	3.93709603690736	3.57563740881848	4.30159844389759	4.0963458106204	3.87752035369848	4.0875129894369	4.0133790884597	0.151083673475287	0.752785564455113	0.902657672182807
Merged-chr16-91852439-3	chr16	91852308	91852508	+	867.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 21 of 28)	intron (NM_001110275, intron 21 of 28)	79222.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	3.85931910420592	3.81757795588249	3.66327721188696	3.55890034088911	3.49211589685593	3.78160897438264	3.64852509155536	3.55054403522769	-0.327366105373775	0.496462754887068	0.766428577658633
Merged-chr14-69795552-3	chr14	69795449	69795649	+	719.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153514, intron 6 of 9)	intron (NM_153514, intron 6 of 9)	9996.0	NM_153514	246710.0	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	2.89153757245137	3.52974673927293	2.96395674687115	3.25958388829376	3.3332934581006	3.27077490120218	3.20733389014158	3.27427276182345	0.297171180470263	0.621641024209954	0.837946907721623
Merged-chr1-33757084-2	chr1	33757019	33757219	+	604.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145392, intron 1 of 2)	intron (NM_145392, intron 1 of 2)	631.0	NM_145392	213539.0	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	2.56581682346341	2.61867640438305	2.63578310315018	2.60701454905033	2.78636405485044	2.87217743919267	2.87085455012663	2.76368344553217	1.03950849895956	0.0963232277474661	0.340062751530504
Merged-chr13-76018225-2	chr13	76018125	76018325	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178916, exon 1 of 4)	5' UTR (NM_178916, exon 1 of 4)	337.0	NM_178916	218341.0	Mm.266515	NM_178916	ENSMUSG00000043190	Rfesd	AI256775|D030068K09	Rieske (Fe-S) domain containing	protein-coding	5.20104847200965	5.24974174618454	5.70536171840062	5.3141754705325	5.55693891847597	5.59648782709339	5.39496178606116	5.58049085858273	0.277661421923722	0.332381707459555	0.643434879668289
Merged-chr6-137649299-4	chr6	137649202	137649402	+	866.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271588)	promoter-TSS (NM_001271588)	-17.0	NM_007945	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	4.31454252664678	4.31039051049659	4.13500180891148	4.42337903545095	3.9461942545799	4.04848063481606	4.37608815824097	4.26982071075386	-0.35753617723174	0.383538925562129	0.685433400480921
Merged-chr6-48841413-4	chr6	48841319	48841519	+	960.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164209)	promoter-TSS (NM_001164209)	-45.0	NM_001164208	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	5.03798127651187	4.90283772895275	5.03882545546055	4.9639256018921	5.15768947852192	4.87261479078119	5.2565341383483	5.1009510910136	0.242921916268341	0.430518878474197	0.721108120456474
Merged-chr9-108263914-4	chr9	108263827	108264027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276481)	promoter-TSS (NM_001276481)	31.0	NM_001276486	13138.0	Mm.7524	NM_010017	ENSMUSG00000039952	Dag1	D9Wsu13e|DG|Dp427|Dp71	dystroglycan 1	protein-coding	8.47191546732965	8.28323901194178	8.40770419041649	8.27750166732968	8.46323927202508	8.4829504851137	8.49149453709426	8.06557716101014	0.0380300245778202	0.822280396673023	0.932125565045772
Merged-chr6-38952663-4	chr6	38952565	38952765	+	897.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	33679.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	4.34211939885004	4.90132440999912	4.29834467710935	4.25910490793208	4.37593568726929	4.33206634096244	4.2337187426851	3.99219767255116	-0.547246500260593	0.200433968545096	0.502485838102051
Merged-chr13-64248596-4	chr13	64248493	64248693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045798)	promoter-TSS (NR_045798)	-55.0	NM_001122989	218294.0	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	5.21475974949682	5.006196673601	5.36270004304084	5.53121870968781	5.18393489023718	5.32614512556569	5.30792554547281	4.6799672691516	-0.285273947518056	0.396092086764852	0.695053093800641
Merged-chr13-117220802-4	chr13	117220743	117220943	+	837.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010330, exon 1 of 9)	5' UTR (NM_010330, exon 1 of 9)	270.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	3.35827960292045	3.69613128699682	4.1399507563484	3.70622745235134	3.54791090213708	3.72069975321766	3.53227270702456	3.60058351877702	-0.465996113747104	0.365365072817231	0.670058758066003
Merged-chr12-36157918-4	chr12	36157827	36158027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146033, intron 1 of 9)	intron (NM_146033, intron 1 of 9)	803.0	NM_146033	217473.0	Mm.130422	NM_146033	ENSMUSG00000036188	Ankmy2	AI035571|ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding	4.72875881343002	4.66538501867222	4.7691396081513	5.03450435265071	4.74526577554194	4.98150058784859	4.85778483985455	5.19211467925046	0.247573658504548	0.472859494380029	0.750884926612442
Merged-chr2-126933178-4	chr2	126933074	126933274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023220)	promoter-TSS (NM_023220)	61.0	NM_023220	66552.0	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	8.0461071022918	8.13553004683263	8.24421125078959	8.07495307968845	7.71471822045819	7.78001600935353	7.80660716639718	7.744614462379	-0.472274094404387	0.00289216941807873	0.031082851730247
Merged-chr11-20532360-10	chr11	20532287	20532487	+	998.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10866.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	5.69918078813856	6.57428481890049	5.53044539713653	5.38148005075502	6.0621853691286	6.31746676180274	5.86605164657206	5.33173029148884	0.0825308065626367	0.825924798770942	0.933190575949898
Merged-chr9-90013473-4	chr9	90013376	90013576	+	822.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357743, intron 23 of 26)	intron (NM_001357743, intron 23 of 26)	-40791.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	4.07659365070561	4.13684337415363	4.35732978129779	4.62882314817628	4.16998855413765	4.3975909086063	4.37837987001369	4.22227054020615	-0.114346413386766	0.783635511188903	0.915735943440675
Merged-chr2-14244839-4	chr2	14244732	14244932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 3 of 29)	intron (NM_008625, intron 3 of 29)	15418.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	5.87974099822567	5.3390883800495	6.09068477450139	5.79010929049572	5.3677496952533	5.31851363269785	5.21878680610917	5.3713468113411	-0.816634492504145	0.00633196054911522	0.0564295254695721
Merged-chr11-118202680-6	chr11	118202629	118202829	+	889.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	10013.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	5.03941079598223	4.53955950677058	5.19594715472496	5.25601192833002	4.6683166696992	4.60085289650318	5.16987524538002	5.35650790326386	-0.10701871755392	0.783664774191215	0.9157492895507
Merged-chr5-31871000-4	chr5	31870916	31871116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 6 of 11)	MTEa|LTR|ERVL-MaLR	172966.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	6.16093952351792	5.9767255611746	6.23795723682949	6.31942548987918	5.98311645814141	5.95419877037254	6.13051230702867	6.03446268345498	-0.252030841234308	0.286946710927605	0.598607969863316
Merged-chr13-34332918-4	chr13	34332840	34333040	+	943.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 1 of 10)	intron (NM_001033167, intron 1 of 10)	12242.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	4.96752208099427	4.86812772534149	5.1611901246489	5.3917416295969	4.73076525744048	4.79068941313714	4.75955187660343	5.09662356310174	-0.552467222475547	0.106770552969411	0.360348218742401
Merged-chr6-115992052-3	chr6	115991863	115992063	+	746.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026376, intron 1 of 35)	intron (NM_026376, intron 1 of 35)	3042.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	2.78796301003587	2.68196216930333	2.78836473286751	2.46689727719098	2.52164557446111	2.41832956447831	2.38877915815886	2.72892434759538	-0.845694004761731	0.240738635311662	0.551325700740017
Merged-chr13-98299252-4	chr13	98299186	98299386	+	909.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17681.0	NM_145455	218490.0	Mm.371688	NM_145455	ENSMUSG00000021660	Btf3	1700054E11Rik	basic transcription factor 3	protein-coding	3.92829921670113	4.44244959342645	3.8149653528164	4.13531408263151	4.28606248916564	4.15758561654854	4.32518207834822	4.08076803841497	0.274020082520347	0.527043308588896	0.784096064657872
Merged-chr11-29875009-4	chr11	29874928	29875128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 7 of 41)	RMER16_Mm|LTR|ERVK	-49360.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	6.4378367928884	6.08496213809814	6.74418663144068	6.2513433521149	6.1651252640174	5.90957472119516	6.30351503708725	6.25786477983763	-0.336956527013742	0.187780275998389	0.486178243317668
Merged-chr2-80080621-4	chr2	80080534	80080734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	-41732.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	7.82134541458772	7.93570878021087	7.90583054616986	8.06590208354899	8.19945663090384	8.11941332340264	8.03164812112967	8.03226534226933	0.202773820913801	0.209391432545364	0.513940748725158
Merged-chr3-96696400-4	chr3	96696316	96696516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146135)	promoter-TSS (NM_146135)	41.0	NM_146135	229615.0	Mm.1635	NM_018812	ENSMUSG00000028101	Pias3	Pias3l	protein inhibitor of activated STAT 3	protein-coding	6.11131704031515	5.99066494551884	5.60245398386764	6.11376381450415	5.76197428401516	5.75173881535441	5.91949088149105	5.70773813510885	-0.312845321922832	0.230943368098559	0.540396396919272
Merged-chr4-155249996-4	chr4	155249891	155250091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190445)	promoter-TSS (NM_001190445)	25.0	NR_033802	67513.0	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding	5.09478945950009	5.22568820814692	5.13257578812416	5.16288400206988	5.68700470616173	5.68388383964164	5.76964795892961	5.89866951795204	1.04381723576516	0.000110521750080781	0.00220544649537424
Merged-chr13-67772495-3	chr13	67772393	67772593	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7200.0	NM_028402	72958.0	Mm.53849	NM_028402	ENSMUSG00000090659	Zfp493	2900054J07Rik|Rslcan12	zinc finger protein 493	protein-coding	3.78066814889209	3.62805429707693	3.78122293164811	2.95373403905676	6.12866008438385	5.88823867774798	6.18160748482025	6.26782826148668	6.39953804530797	1.04261885955616e-32	1.57899080434783e-29
Merged-chr7-99536260-5	chr7	99536146	99536346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178220, intron 1 of 14)	intron (NM_178220, intron 1 of 14)	760.0	NM_177231	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	5.62693205052192	5.70577931663046	5.74523436545048	5.40259202104217	5.48585114794276	5.33088007931741	5.38526583219665	5.25326565835508	-0.419972243231902	0.137948225654317	0.413153949080563
Merged-chr2-102967631-4	chr2	102967524	102967724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65959.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	6.76278205632662	6.60465074486654	6.38337606879271	6.82670930272628	6.54422687996188	6.56042633933494	6.55442384027464	6.30254666159462	-0.246960522389905	0.265826751965977	0.577519835735014
Merged-chr1-65112245-4	chr1	65112158	65112358	+	811.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175293, intron 5 of 7)	intron (NM_175293, intron 5 of 7)	-8895.0	NM_007774	12964.0	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	3.58870791962731	3.6961503224764	3.46793640895145	3.54758087869593	3.94571451370201	3.81951218448561	4.08704403824105	3.64390605612736	0.922153852999338	0.0476413590137563	0.22509553888086
Merged-chr14-60757456-4	chr14	60757344	60757544	+	982.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033272, intron 11 of 12)	intron (NM_001033272, intron 11 of 12)	-10690.0	NM_183175	239126.0	Mm.319636	NM_183175	ENSMUSG00000071347	C1qtnf9	9130217G22Rik|CTRP9|Ciqtnf9	C1q and tumor necrosis factor related protein 9	protein-coding	5.41349098012464	5.69830591654126	4.88932690809182	4.70347275637164	5.09465374626063	5.06702296189915	4.66147386337866	4.7238124860076	-0.627776668712129	0.113260099901066	0.372057441889328
Merged-chr11-72752211-4	chr11	72752108	72752308	+	981.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009671, exon 15 of 25)	exon (NM_009671, exon 15 of 25)	43631.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	5.10333174804189	5.03341344325022	5.53367534223029	5.73625641243801	5.24755011171078	5.17140227124486	5.45283682140441	5.86902345055511	0.109259151189006	0.752951722882597	0.902713603306311
Merged-chr6-136497985-4	chr6	136497902	136498102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20849.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	6.33632309300739	6.67523516811783	6.21731406834066	6.4501829487855	6.84008414176438	6.7558378237068	6.60763847916411	6.45994963794113	0.351912706705047	0.119609686509184	0.382706908030082
Merged-chr2-30265861-3	chr2	30265764	30265964	+	907.138855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252568)	promoter-TSS (NM_001252568)	-339.0	NM_001252568	227696.0	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	4.04680203313039	4.06968947333436	3.74293815940337	3.90733079719754	4.26348378694379	4.02553086861094	3.78410445795361	3.74097155982593	0.096069040785627	0.834065573428255	0.936668982535258
Merged-chr8-61665215-4	chr8	61665183	61665383	+	879.5125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-74114.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	4.77189007814436	4.33555002114099	4.74203026927228	4.47614097080362	3.7659951101229	4.07003303913498	4.03803174927575	3.94174494635407	-1.62860642290217	0.000151704875803614	0.00287952036128678
Merged-chr17-71263323-4	chr17	71263262	71263462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	47649.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	6.77336557256449	6.46511977880204	6.99238742282136	7.141961776084	5.99534990061143	6.12556461616638	5.78067291610841	6.15030303258292	-1.27061098894822	4.80185031894899e-07	1.7866748763851e-05
Merged-chr5-123749563-4	chr5	123749464	123749664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042421)	promoter-TSS (NM_001042421)	-150.0	NM_001359865	208606.0	Mm.276341	NM_025438	ENSMUSG00000029422	Rsrc2	1500011J06Rik	arginine/serine-rich coiled-coil 2	protein-coding	7.88661672946331	8.09979075876126	7.58181858810273	7.43837262283357	7.97427377004297	8.04373682148376	7.56265771202703	7.68992966164167	0.0798990668968885	0.712885784751534	0.885110454967459
Merged-chr10-60388541-4	chr10	60388451	60388651	+	974.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 30 of 68)	intron (NM_001252635, intron 30 of 68)	-11175.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	4.67143880875695	4.93851301061963	4.71087671645056	5.22281394122091	4.57950704866683	4.15451959379414	4.57010865098025	4.70776822757865	-0.848611854877063	0.0284972161695878	0.161961302278433
Merged-chr12-38779512-4	chr12	38779401	38779601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007960)	promoter-TSS (NM_007960)	-581.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	6.69339671506099	6.88241554796002	6.83731164237322	6.59677802016478	6.85468256631657	6.65871333833642	7.03478116089091	6.4940630347248	0.0436742914552592	0.842684155671419	0.940251336238462
Merged-chr4-16112658-4	chr4	16112547	16112747	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50996.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	5.12313540277925	5.77555349195791	5.2665178165987	4.96490246692939	6.19466420960564	5.96070900802218	5.75720128255103	5.15756107465413	0.861667960086157	0.0157940322469862	0.108786860974282
Merged-chr9-95688285-3	chr9	95688178	95688378	+	825.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 6 of 8)	intron (NM_029620, intron 6 of 8)	50650.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	3.48340712394425	3.77510998586182	3.48384479929903	3.2354503003137	4.19537198902965	3.72025672775798	3.64128473316256	3.75742705411615	1.08414073255278	0.0345453422439858	0.183925717374872
Merged-chr2-23156014-4	chr2	23155908	23156108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025979)	promoter-TSS (NM_025979)	16.0	NM_025979	67121.0	Mm.253721	NM_025979	ENSMUSG00000026779	Mastl	2700091H24Rik|C88295|GW|GWL|MAST-L|THC2	microtubule associated serine/threonine kinase-like	protein-coding	8.57348901465171	8.80435414673563	8.49132460549371	8.59098390157866	8.76401048701193	8.7715486507036	8.8147466419882	8.70003606860853	0.177623421229948	0.23630839594049	0.546332838321862
Merged-chr5-140611866-3	chr5	140611768	140611968	+	895.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008494, exon 2 of 8)	exon (NM_008494, exon 2 of 8)	4527.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	3.0152769959599	3.05458855455924	3.27965565808122	2.83818903384823	2.93274653304169	2.86352472995769	2.88292142822841	2.75576239425387	-0.816324954875234	0.193722602435033	0.493910062279647
Merged-chr17-94834955-4	chr17	94834832	94835032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045963)	promoter-TSS (NR_045963)	-133.0	NR_045963	100038746.0	Mm.456686	NR_045963	ENSMUSG00000066057	Gm1976	100038868	predicted gene 1976	ncRNA	5.80860701024466	5.48961400573296	6.12922853150863	5.95590666488945	5.54120160024165	6.07784055565248	5.93837705053657	5.96466667931379	0.0280062314203927	0.921273984650306	0.970833179463265
Merged-chr8-105499341-3	chr8	105499247	105499447	+	876.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2445.0	NM_175160	70796.0	Mm.100917	NM_175160	ENSMUSG00000039199	Zdhhc1	4432412D04Rik|DHHC-1	zinc finger, DHHC domain containing 1	protein-coding	3.73879240645155	3.81466872107658	3.50848168002692	3.71448675683045	3.71046502882254	3.91114280636263	3.96187635923704	3.88667165896751	0.47934380612675	0.292074002019979	0.604488172040016
Merged-chr18-38930588-4	chr18	38930486	38930686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 3 of 4)	intron (NM_001033789, intron 3 of 4)	-11887.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	5.90348460095635	5.763389890277	5.6342446007155	6.03723762901255	5.5375774862953	5.88963416024447	6.09534426772304	5.63028386281856	-0.0920076620339348	0.740573557382721	0.89796578098129
Merged-chr17-80728201-4	chr17	80728104	80728304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290345)	promoter-TSS (NM_001290345)	-179.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	6.11679632731021	6.22358207308687	5.9180280553256	6.08528841401908	6.39821751252301	6.18724719510324	6.42453866125541	5.78769425621969	0.212678740724402	0.404015603248014	0.701206012163242
Merged-chr15-90634033-2	chr15	90633936	90634136	+	731.75	f0_balb.idr|f1_balb.idr	intron (NM_001357979, intron 3 of 18)	MTA_Mm|LTR|ERVL-MaLR	45352.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	3.50682160542043	3.39451207838378	3.98524607794311	3.50918479431397	2.63786370443007	2.77323831356857	2.73820197601984	2.74395562453157	-5.75740816423413	1.89075444243428e-07	7.66412360239347e-06
Merged-chr13-102693505-4	chr13	102693395	102693595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008533)	promoter-TSS (NM_008533)	-52.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	6.34280100139337	6.42111705940201	6.60520882273819	6.99673596088117	6.49920683569643	6.70058422141229	6.69087758284762	6.70598347856381	0.0129038517296007	0.957522258787834	0.984850737934993
Merged-chr3-103017592-4	chr3	103017543	103017743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2903.0	NM_001310693	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	6.10517892453429	6.3058546421857	6.28876850091681	6.51302465581149	6.41709378665281	6.30496168463527	6.2936387380178	6.52405619453191	0.0922238630000018	0.687112068358879	0.872094825586502
Merged-chr5-137828890-4	chr5	137828795	137828995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153510, intron 3 of 6)	intron (NM_153510, intron 3 of 6)	7383.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	7.62817729693367	7.83461433656074	7.67188286699143	7.82000725512253	7.54225589017037	7.72661453415583	7.68334189564999	7.60689250498737	-0.144937938811778	0.390295319571305	0.690464286113232
Merged-chr2-117936747-3	chr2	117936629	117936829	+	758.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	114801.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	3.12804938493582	3.30764187298275	3.40072165020318	3.29547526208451	3.06026183411999	3.0402420498844	2.92443589089874	3.24267110814716	-0.853042032186245	0.1374327618501	0.412347498929588
Merged-chr5-139555944-4	chr5	139555803	139556003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12005.0	NM_013702	22255.0	Mm.42190	NM_013702	ENSMUSG00000029546	Uncx	Chx4|Uncx4.1	UNC homeobox	protein-coding	6.56720864858769	6.79311866548168	7.04205132554275	6.74645742630793	5.46634127838023	5.61676583656083	5.6578621049863	5.55998634141304	-1.89883970255917	1.34899240102823e-14	2.03895213623224e-12
Merged-chr2-128734845-2	chr2	128734745	128734945	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 2 of 18)	intron (NM_008587, intron 2 of 18)	35930.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	3.04484595095345	2.98213396123037	3.04526276226005	3.04438710455185	2.8409020583403	2.6875347668183	2.72582644577425	2.98703103800205	-0.960369891981488	0.125365891248355	0.392963659202335
Merged-chr10-18995711-4	chr10	18995646	18995846	+	828.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16217.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	4.08917344075605	4.33211389164474	4.08977629678063	4.03174606885478	4.29294404900129	4.52101787646671	4.02326920645941	3.87676704989646	0.165653177586658	0.700857333537226	0.879374176246616
Merged-chr17-88551178-4	chr17	88551089	88551289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 7 of 21)	intron (NM_028658, intron 7 of 21)	21065.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	6.69860686364937	6.97261292530664	6.60345019295226	6.53311655636233	7.03711684087971	7.13996451506607	7.08101377335772	6.92069460518667	0.476435560727969	0.0212779996359308	0.133404295045565
Merged-chr11-3196499-7	chr11	3196339	3196539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2976.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.47182067082512	4.72223563115857	5.67427942264711	5.07829374337576	5.43971980263844	5.34413832544715	5.33161496654274	5.94065752995485	0.460419098294154	0.196432841959903	0.497523156170656
Merged-chr2-120850570-4	chr2	120850458	120850658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038349)	promoter-TSS (NR_038349)	26.0	NM_080788	140810.0	Mm.275698	NM_080788	ENSMUSG00000090100	Ttbk2	2610507N02Rik|AI326283|B930008N24Rik|TTK|Ttbk|Ttbk1|mKIAA0847	tau tubulin kinase 2	protein-coding	8.25649644672861	8.39515983839897	8.00851074723082	8.1239612112255	7.68998710770333	7.76645791681156	8.06701841006811	7.71704332097166	-0.498433185504507	0.00588545423590612	0.053520113776034
Merged-chr3-152315833-4	chr3	152315691	152315891	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162375, intron 7 of 13)	intron (NM_001162375, intron 7 of 13)	24616.0	NM_174868	215708.0	Mm.135018	NM_174868	ENSMUSG00000054942	Miga1	A930038D06|AI852168|C030011O14Rik|Fam73a|Mita1	mitoguardin 1	protein-coding	5.35922596556021	5.46279476323006	5.12236032229275	5.3638262653841	5.67529144414847	5.47425820879098	6.06086271395328	5.58309086685596	0.65289222314327	0.0241577336143286	0.145080711240392
Merged-chr19-46309188-4	chr19	46309075	46309275	+	992.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001177369, exon 14 of 23)	exon (NM_001177369, exon 14 of 23)	3245.0	NM_001177370	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	5.14496296038953	5.06048013315027	4.69557991749682	4.78431835299138	4.73172089382418	4.95088737982836	4.89961003970553	4.8113361134852	-0.163777446325675	0.625998859200663	0.840193328664115
Merged-chr1-153803137-4	chr1	153803050	153803250	+	931.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243223, intron 13 of 20)	intron (NM_001243223, intron 13 of 20)	40991.0	NM_001243223	240816.0	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	4.82446449671343	5.28056355848457	4.89594385105256	4.10380499194046	5.11617645733293	4.80717096181159	4.56540857188063	4.53921600280405	-0.114824606575547	0.793381004672596	0.919993817974655
Merged-chr7-65475910-4	chr7	65475825	65476025	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-104681.0	NM_009386	21872.0	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	4.81726823191046	4.71961034988587	5.2665238120902	5.50737594972631	5.20806926303754	5.07536329439594	5.05407485650487	5.3196169507042	0.0576646483188525	0.871251520534132	0.951585268990317
Merged-chr15-73732915-8	chr15	73732853	73733053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	UCON5|Unknown|Unknown	8023.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	4.79234295059145	5.13073179813574	4.91241452317802	4.60023047903462	5.28616910911435	5.58024867197674	5.06467444607406	5.24174823671324	0.845050747860462	0.0103347150831913	0.080868149070302
Merged-chr7-45136467-4	chr7	45136365	45136565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013520)	promoter-TSS (NM_013520)	-33.0	NR_102725	14256.0	Mm.1658	NM_013520	ENSMUSG00000110206	Flt3l	Flt3lg|Ly72L	FMS-like tyrosine kinase 3 ligand	protein-coding	5.92559663234089	5.79406236763091	6.22050989671908	5.92397964127493	6.34723752032013	6.1494717581526	6.27839633427167	6.17807292854995	0.429987663388969	0.070206286942138	0.283706897823007
Merged-chr8-11168189-3	chr8	11168075	11168275	+	781.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B4|LTR|ERVL	-144630.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	4.29896387381952	3.690727539287	4.15253023335469	4.06097326552532	3.45389228179848	3.6871710077242	3.55435003469621	3.3682893936981	-1.69360377567582	0.000952683958893075	0.0129534081203534
Merged-chr19-24225001-3	chr19	24224931	24225131	+	726.655579	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360392)	promoter-TSS (NM_001360392)	97.0	NM_011597	21873.0	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	3.05134588900004	3.13250008445756	3.10820834621223	3.2860580460346	2.86483903585182	2.90261496152792	2.85708465144745	2.79625896059778	-1.33049690267398	0.0304394487056826	0.168873695979874
Merged-chr17-35777229-4	chr17	35777077	35777277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045459, exon 2 of 3)	non-coding (NR_045459, exon 2 of 3)	4727.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	7.05774836127738	7.16477501596434	7.56210191728832	7.26479800773344	7.19367015430696	7.5231543675515	7.72325552237706	7.6240655710236	0.334798395541097	0.111140561782956	0.368307372184414
Merged-chr5-67836435-4	chr5	67836323	67836523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	11008.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	5.65660110191006	5.61353898767219	5.49266547798265	5.97802554196772	5.93260968732995	5.63992495408065	5.3431878930651	5.75260817952558	-0.0360399105344983	0.902006367930014	0.963659775325421
Merged-chr18-34779453-4	chr18	34779364	34779564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081256, intron 1 of 23)	intron (NM_001081256, intron 1 of 23)	2456.0	NM_001081256	277250.0	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	5.54540200612825	6.0056279487401	5.66303364197347	5.88078055120832	6.01352896050889	6.2996166900721	6.18704868926845	6.02066915397623	0.52311027991716	0.0408654169636356	0.204367281251642
Merged-chr3-146120170-3	chr3	146120111	146120311	+	734.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1580.0	NM_134160	171166.0	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	3.45612040867403	3.46094175549359	3.60640917269624	3.71074802794489	3.33540878078546	3.33641176590173	3.08299756727212	3.09051589099879	-1.25785117892769	0.0237926331679908	0.143519986124103
Merged-chr17-29264119-4	chr17	29263997	29264197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026845)	promoter-TSS (NM_026845)	-126.0	NM_026845	68816.0	Mm.328928	NM_026845	ENSMUSG00000024007	Ppil1	1110060O10Rik|AI327391|Cypl1	peptidylprolyl isomerase (cyclophilin)-like 1	protein-coding	5.39895938266122	5.84067559279558	5.71850519354884	5.37617842401359	5.4480942210095	5.51484656303815	5.34276567532323	5.61700758252366	-0.184724775965056	0.521321881166931	0.781328735243796
Merged-chr1-156593506-4	chr1	156593407	156593607	+	966.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	34720.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	3.95812313397059	3.71192868442055	3.68665102508549	4.00700994524348	4.3951439243129	4.35087547286307	3.78726364488442	3.74370287209432	0.677706366134709	0.162433548175135	0.45165270227579
Merged-chr6-28292863-4	chr6	28292772	28292972	+	968.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31271.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	4.75671618611822	5.10461746697245	4.75748164815308	4.63113655771347	5.13342563571359	5.15151678085441	5.11244882652751	4.7543857106906	0.463271210305775	0.169715553734768	0.462417064740738
Merged-chr13-112786387-4	chr13	112786291	112786491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-14386.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	6.54643617734784	7.2034876217362	6.96804845134518	6.58596906104623	7.38836173408614	6.98212704393767	7.06537408402559	7.04940374608587	0.399088844354994	0.0904177875900284	0.328409843489852
Merged-chr14-66791983-4	chr14	66791862	66792062	+	956.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76638.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	4.75948840293445	4.86708396687549	4.59345714722387	4.67639335949019	5.24562792987513	4.93516094061084	5.13395550783369	4.63424555032577	0.58619368859478	0.0881307052860307	0.323887622447046
Merged-chr10-43689290-3	chr10	43689199	43689399	+	766.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56859.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	3.64030435330295	3.7583690762319	3.40916578432239	3.77049230918416	3.37206474034188	3.75860554732356	3.57269056389973	3.83478519426501	-0.0617606778446339	0.902456891781449	0.963809553176566
Merged-chr3-40745996-1	chr3	40745896	40746096	+	1000.0	f0_c57.idr	intron (NM_011020, intron 1 of 18)	intron (NM_011020, intron 1 of 18)	383.0	NM_011020	18415.0	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	4.81254351708872	4.56862069335792	5.02228003301413	4.99057779383975	4.80712133432203	4.98730436724645	4.79062149311978	5.08136079235261	0.0997982667415507	0.767991056717254	0.90926206630202
Merged-chr8-123009075-4	chr8	123008990	123009190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	33194.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	5.06753652787601	5.17335287499899	5.06837783995304	5.22441905552174	5.36238595023379	5.27588510340042	4.97442199148646	5.19541661028516	0.135515568299827	0.653289742138954	0.854997557892684
Merged-chr3-87885010-2	chr3	87884936	87885136	+	959.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_033573, exon 1 of 7)	exon (NM_033573, exon 1 of 7)	526.0	NM_033573	94315.0	Mm.35089	NM_033573	ENSMUSG00000004895	Prcc	-	papillary renal cell carcinoma (translocation-associated)	protein-coding	3.84241201358772	3.68891785118598	3.84299168182036	3.57149803298042	3.66802007441562	3.44270052424488	3.67784863107189	3.97471102449009	-0.0806754716721361	0.868002240321983	0.95054511621709
Merged-chr4-47319024-1	chr4	47318924	47319124	+	632.333313	f0_balb.idr	Intergenic	LTR16C|LTR|ERVL	-34198.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	3.35475878229299	3.54952478755054	3.46543270892807	3.3710997377738	3.63431516158565	3.34589460033305	3.22400658083775	3.23318348276658	-0.185148622534372	0.729483510715371	0.892654153644778
Merged-chr14-45036785-4	chr14	45036698	45036898	+	946.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	48687.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	4.62033495577352	4.63392771699631	4.48976659187808	4.9194801940961	5.01799924940337	4.52533281772631	5.07507084363959	4.69868533665914	0.337273622904354	0.360733270227046	0.665956879382999
Merged-chr4-134551828-3	chr4	134551749	134551949	+	797.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029100, intron 1 of 11)	intron (NM_029100, intron 1 of 11)	317.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	3.3393893889092	3.47170976415004	3.51211575894837	3.34256985302385	3.14046396790085	3.51546931310865	3.59981009306731	3.75373390458734	0.336524418952563	0.52693298864435	0.784016455166626
Merged-chr12-25091956-1	chr12	25091856	25092056	+	955.0	f0_balb.idr	Intergenic	URR1A|DNA|hAT-Charlie	4136.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	4.49141369215608	4.57424476245549	4.12372909676373	4.07583991734347	3.69704659759757	4.20151528000776	3.84706451682328	4.07291505501932	-0.960967463108101	0.0354789546032473	0.186966499570929
Merged-chr18-39137610-4	chr18	39137504	39137704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 10 of 21)	intron (NM_001361073, intron 10 of 21)	144459.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	5.3479533387002	5.60379539072475	5.46928580696604	5.79471671450563	5.48421430252456	5.61550055678682	5.52481656072725	5.60143545832805	-0.0547400772056161	0.84415193927844	0.94088019607581
Merged-chr8-26907698-4	chr8	26907541	26907741	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69695.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	4.69209023293183	4.5460704253361	4.18230320029036	4.89380661828175	4.23733663820167	4.30989082929663	4.21555922318123	4.68970097727508	-0.552261883593051	0.183081107289635	0.479931757527872
Merged-chr4-133451744-4	chr4	133451654	133451854	+	793.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28379.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	3.76780436208544	3.6982847692091	3.4491318504147	3.4583862396603	3.75459238186394	3.6809933446275	3.55074244981262	3.50628243188663	0.120480554043907	0.80515743935926	0.925171083261684
Merged-chr9-50560708-4	chr9	50560579	50560779	+	990.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025687, intron 1 of 4)	intron (NM_025687, intron 1 of 4)	589.0	NM_025687	66654.0	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	5.73512657732958	6.22144741172368	5.42573749518455	4.95104885764503	5.31751199637988	5.83955493106879	5.21076749531148	4.97192642003815	-0.500138521940653	0.204400607793564	0.50766010196232
Merged-chr2-151039402-4	chr2	151039291	151039491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026086)	promoter-TSS (NM_026086)	-12.0	NM_026086	67311.0	Mm.480682	NM_026086	ENSMUSG00000053916	Nanp	1600031M04Rik|Hdhd4	N-acetylneuraminic acid phosphatase	protein-coding	7.36985306131309	7.00277091971642	6.95741058829432	6.85923121679234	7.30293484225953	7.06690571465681	7.15076408148959	7.22511649961251	0.195582940205246	0.33876654656531	0.648145150521291
Merged-chr2-160361319-2	chr2	160361219	160361419	+	927.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5746.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	4.47490420040646	4.71360019276461	4.51563234830406	4.47813466904793	4.21278080990276	4.4300638488417	4.08457084467451	4.47273267676862	-0.570647716993381	0.137543383440202	0.412601166971096
Merged-chr2-131489034-2	chr2	131488934	131489134	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2828.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	2.9526485801466	2.73746953012075	2.83322689423437	2.42837513603963	2.78343748308711	2.87790802671374	2.82281584348174	2.95137143226252	0.536225496327554	0.419081841944871	0.712251159515261
Merged-chr18-61077359-3	chr18	61077267	61077467	+	873.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 15 of 22)	intron (NM_008809, intron 15 of 22)	-28205.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	3.44021836165978	3.77070164619993	3.55787198535632	3.18739934800165	3.86693232689209	3.83629623734703	3.70009451316931	3.43891000933753	0.709488995938172	0.173244158657938	0.467220322400386
Merged-chr8-8198638-3	chr8	8198532	8198732	+	836.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	462141.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	3.74341108356768	3.78963417658171	3.6880262648205	4.12252902688173	3.8437011016422	3.68529310363829	3.97440799891476	4.0764147378302	0.103219993829885	0.826872563779769	0.933582996245152
Merged-chr5-136218156-4	chr5	136218055	136218255	+	939.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302938)	TTS (NM_001302938)	-19201.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	5.07979331619808	5.50634567800448	4.98174662465147	4.19860809766978	4.82714706772615	4.97548783397101	4.9572372516489	4.90792837109039	-0.20384952080479	0.624242447452154	0.83935232045714
Merged-chr4-22384086-4	chr4	22383983	22384183	+	802.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172988, intron 3 of 8)	Lx7|LINE|L1	26540.0	NR_104380	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	3.25784263158148	3.44402927807291	3.91961757703452	3.51714977899573	3.42505274652002	3.99874828075651	3.85782147929069	3.57274508248531	0.533440477572443	0.320630198900301	0.632430335149585
Merged-chr15-41842133-4	chr15	41841986	41842186	+	673.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 12 of 17)	intron (NR_152565, intron 12 of 17)	11128.0	NM_001130164	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	3.47550713196038	3.4798979699071	3.76323697074333	3.24870800955191	3.28742203909501	3.21804251909292	3.23010744028357	3.57705553307287	-0.556484444398976	0.3118019423695	0.623665218229603
Merged-chr5-105056272-4	chr5	105056158	105056358	+	923.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-2697.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	4.5608767303645	4.13211209304728	4.70683371737447	4.22095663278616	4.7204827445725	4.38819418954588	4.03311570735975	4.70361145842037	0.182110296758463	0.67144904103967	0.864751235654676
Merged-chr12-85519748-4	chr12	85519653	85519853	+	986.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45863.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	5.64778483202823	5.28942731756247	5.71870076389305	5.38675929266687	5.36525350353109	5.66945488754099	5.26449895546917	5.0805675004842	-0.267133650096819	0.380084933555444	0.682562960075259
Merged-chr11-77028788-3	chr11	77028684	77028884	+	872.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010484, intron 13 of 13)	intron (NM_010484, intron 13 of 13)	30187.0	NM_010484	15567.0	Mm.300318	NM_010484	ENSMUSG00000020838	Slc6a4	5-HTT|AI323329|Htt|Sert	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	protein-coding	3.27188332516909	3.47079028386932	3.38354938487739	3.34913421647218	3.06628674198993	3.12600132733952	3.14017047908643	3.48372388197164	-0.593158938319501	0.284378450825956	0.596289999025483
Merged-chr11-72042401-4	chr11	72042311	72042511	+	890.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144526)	promoter-TSS (NM_144526)	-91.0	NM_144526	109212.0	Mm.33118	NM_144526	ENSMUSG00000020808	Pimreg	2610008F03Rik|6720460F02Rik|AI115087|CATS|Fam64a	PICALM interacting mitotic regulator	protein-coding	4.27804542313238	4.2914797722128	4.03003623990574	4.13045235767718	4.35837946563591	4.76484946601753	4.30370445091723	4.32049203377373	0.625832455888204	0.11291387210773	0.371420623567672
Merged-chr10-127266292-4	chr10	127266191	127266391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190454)	promoter-TSS (NM_001190454)	29.0	NM_001190453	69654.0	Mm.167537	NM_027151	ENSMUSG00000025410	Dctn2	2310042E05Rik|C130077D06Rik|C87049|DCTN-50|GMP23-48K|RBP50|p50	dynactin 2	protein-coding	7.8300169954329	7.78977909080028	7.40290297404803	7.62766276727061	7.95931470520139	7.78216847253565	7.91964183262189	7.53578370839857	0.184333307510007	0.332685687626207	0.643580601966062
Merged-chr19-47651006-1	chr19	47650906	47651106	+	607.0	f0_balb.idr	intron (NM_007732, intron 45 of 52)	intron (NM_007732, intron 45 of 52)	41036.0	NM_007732	12821.0	Mm.1225	NM_007732	ENSMUSG00000025064	Col17a1	BP180|Bpag|Bpag2	collagen, type XVII, alpha 1	protein-coding	3.09517776680421	3.19586169967659	3.39365494826002	2.41037761983898	3.0570952399703	2.66102303070846	2.77235766824876	2.63125275476915	-1.2152004139216	0.12021401214755	0.383810790826571
Merged-chr6-134049116-4	chr6	134049012	134049212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	MTD|LTR|ERVL-MaLR	13412.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	5.51984277316766	5.72829749782872	5.57701622190413	5.62666526875634	5.79175005169489	5.41312057667177	5.6024322922653	6.13849236104713	0.250682448402344	0.376470584528919	0.679190359379999
Merged-chr10-61474484-4	chr10	61474387	61474587	+	790.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-1346.0	NM_153542	216011.0	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	3.87082062949135	4.12502299635042	3.8170138931404	3.61730312476635	4.12567948539939	3.93906445225704	3.90714241841503	4.42150101961333	0.686089128228687	0.132747636209468	0.405738749474138
Merged-chr4-102655564-4	chr4	102655451	102655651	+	887.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65708.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.79749829647764	4.58238959264346	5.33514853341791	4.99477520173268	4.71429608056929	4.24783036098456	4.31715233433243	4.22874116987035	-1.1811361639449	0.00424980495276599	0.0420486586956578
Merged-chr9-88725487-2	chr9	88725387	88725587	+	909.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007536, intron 1 of 1)	intron (NM_007536, intron 1 of 1)	-5689.0	NM_001128601	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	3.11960457358886	3.88072848781105	3.54278863462081	2.46202442554642	3.56923968992055	3.37342121499665	3.30437278338614	3.5405573588314	0.154857653118477	0.907276374331541	0.96565361691694
Merged-chr1-87620385-4	chr1	87620296	87620496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010566)	promoter-TSS (NM_010566)	84.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	6.63760995453389	6.48604306840884	6.27616922769842	6.64762675258015	6.54195101530045	6.26156990625279	6.66323735276071	6.76214033011961	0.0629626625402904	0.782847823663355	0.915388590183887
Merged-chr17-32319454-4	chr17	32319351	32319551	+	919.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357760, intron 1 of 11)	intron (NM_001357760, intron 1 of 11)	1787.0	NM_001357760	56399.0	Mm.328945	NM_019774	ENSMUSG00000024045	Akap8	1200016A02Rik|AA673585|AKAP-8|AKAP95|AU015639	A kinase (PRKA) anchor protein 8	protein-coding	3.84978406561597	4.45009852238277	3.95586653217061	4.08828621979456	4.15333626860963	3.85592717619901	4.24909644062666	3.60875711769125	-0.296128810913474	0.540412243041748	0.792786542610647
Merged-chr3-87499107-8	chr3	87499022	87499222	+	958.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113238, intron 11 of 11)	intron (NM_001113238, intron 11 of 11)	-26456.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	3.42790894852742	3.19531309643441	3.42840365129792	2.84559570135524	3.36672796551082	3.23470751593604	3.35853749051507	3.88356883095944	0.849134753010819	0.15406069773015	0.439181632779434
Merged-chr3-154842487-3	chr3	154842411	154842611	+	851.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177066, intron 21 of 24)	intron (NM_177066, intron 21 of 24)	131378.0	NM_175176	209601.0	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	3.16709787313198	3.12863728365238	3.09483264554742	2.8174454983679	3.53376569300517	3.9544916624787	3.89212722511534	3.73631155680763	2.67655713910669	9.19166463828228e-07	3.24852779189818e-05
Merged-chr11-78887198-4	chr11	78887079	78887279	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33608.0	NM_010927	18126.0	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	5.53695814120757	6.29133572364573	5.67552012917288	4.93030200340881	6.29134596835269	5.97552612299414	5.74613110685058	5.31322288090533	0.297231444965407	0.440557376049913	0.727944976505159
Merged-chr3-137833306-4	chr3	137833204	137833404	+	983.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31183.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	5.38169153827304	5.90481850384126	5.72695799119442	5.03928156170364	5.70217406886596	5.82889342129121	5.19517864139027	5.18231389485825	-0.059601192255332	0.865194997028321	0.949535988663619
Merged-chr13-112100852-3	chr13	112100765	112100965	+	842.644409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-187586.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	3.3551416938852	3.23498049196204	3.69605686433706	3.46895224098594	3.19503002542414	3.41198115814395	3.10104232344195	3.10935542834426	-0.88172384219144	0.115590494020142	0.376239975025594
Merged-chr7-89908141-2	chr7	89908041	89908241	+	795.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4512.0	NM_001162979	70884.0	Mm.252823	NM_001162979	ENSMUSG00000039391	Ccdc81	4921513D09Rik	coiled-coil domain containing 81	protein-coding	3.16986980900743	3.11135992343177	3.04887927155489	3.06191923632294	3.11032610336333	3.22101536962497	3.21440332939462	3.2792966322997	0.424737098444293	0.433394172786298	0.722922849286555
Merged-chr11-37186308-3	chr11	37186212	37186412	+	855.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-242071.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	3.51455049241397	3.18367298429185	3.02241957209867	3.30871883842334	3.68009687574308	3.52302580777172	3.50032905706292	3.40620536808825	0.901576781856357	0.0931494150100384	0.333867879097614
Merged-chr2-118567388-4	chr2	118567270	118567470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17684.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	6.34763611263864	6.04685427014453	5.51213291781023	6.01573549452347	6.2250644496838	5.99997167383751	6.15869891341623	5.86779911928185	0.0961437224073246	0.726304841398001	0.891034932051019
Merged-chr2-6179927-4	chr2	6179818	6180018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-13333.0	NR_040333	320132.0	Mm.445891	NR_040333	ENSMUSG00000087125	A230108P19Rik	-	RIKEN cDNA A230108P19 gene	ncRNA	7.20430343172673	6.92776626331929	7.01718132208003	7.3361871392761	6.29257782658196	6.31871221696656	6.88248797810188	6.79046324864382	-0.765593402732927	0.00126479745493616	0.0162415691944616
Merged-chr7-29818929-4	chr7	29818802	29819002	+	938.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145880, intron 1 of 4)	intron (NM_001145880, intron 1 of 4)	2830.0	NM_001145880	233056.0	Mm.224766	NM_146185	ENSMUSG00000011427	Zfp790	6330581L23Rik	zinc finger protein 790	protein-coding	3.8740579907238	4.08824790420737	4.13419593613484	3.82500589653872	4.46090932600356	4.21163497045574	4.44263013526336	4.17786710563808	0.914664134760084	0.0247726170443994	0.147555657623708
Merged-chr5-124493641-4	chr5	124493590	124493790	+	972.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021430, exon 7 of 7)	3' UTR (NM_021430, exon 7 of 7)	10535.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	4.94897074545235	4.6041569074729	4.78595889500062	4.65731984460459	4.50632442620333	4.77109441736884	4.15242204101997	4.63444515187669	-0.471204074605939	0.210732744491411	0.515348932184229
Merged-chr9-59585006-4	chr9	59584892	59585092	+	943.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175235, intron 2 of 11)	intron (NM_175235, intron 2 of 11)	-4296.0	NM_001361099	76183.0	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	3.9809525241733	4.38761207531064	3.54991458770838	4.23024275222129	4.49304271871299	4.25725895269028	3.85646831363536	4.42172048153079	0.500710503636294	0.317088497998776	0.628937251269434
Merged-chr3-139074091-3	chr3	139074002	139074202	+	842.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 1 of 13)	intron (NM_001356388, intron 1 of 13)	1099.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	3.33972406646991	3.11658963453616	3.21704574941983	3.29270238388751	3.41929727769943	3.39420993186161	3.38428807673992	3.86062515377437	0.968334393288431	0.0694891829107566	0.281961609303657
Merged-chr9-67838935-3	chr9	67838832	67839032	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-1464.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	5.01376752925574	4.6720176846938	4.77256788238102	4.8099550031148	4.29269808379023	4.02361427684309	4.11815095579776	4.18616342318951	-1.52269759898387	0.000108020519447975	0.00216524712863628
Merged-chr11-37077465-4	chr11	37077350	37077550	+	942.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133209.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	4.7245506050877	4.56052262044651	4.76630248527309	5.60097695432844	5.11338439361504	4.86171849883328	5.151219147651	4.76319153646616	-0.0460478041828431	0.911316154203096	0.96695373445261
Merged-chr2-59246304-3	chr2	59246191	59246391	+	930.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	URR1B|DNA|hAT-Charlie	85441.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	3.60595227470514	3.68682583363817	3.8908959921765	3.80507717989994	3.34074359451492	3.20577875720509	3.64334784279996	3.55024460157475	-1.01182021277497	0.0505887775109786	0.233289112840458
Merged-chr6-145824024-4	chr6	145823936	145824136	+	707.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15653.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	3.63963017070749	3.55126717641814	3.27506489575332	3.77022385028524	3.47114459990899	3.70310950966204	3.8639189842344	3.83446014378981	0.428916328785286	0.403268512041091	0.700700507615324
Merged-chr10-117905890-4	chr10	117905784	117905984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19575.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	5.85191407845694	5.91865999688123	5.63657843409536	5.76897995964116	5.54790660398681	5.73083780476398	5.58195769522577	5.46546565856812	-0.363691112900796	0.16241691699377	0.45164174452864
Merged-chr6-135168182-4	chr6	135168083	135168283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013546)	promoter-TSS (NM_013546)	32.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	6.93290237331052	6.84708191380327	6.72176969340288	6.8003703302307	7.00829501972127	7.08445626421941	7.29565671273335	6.8760287952163	0.344002403251823	0.0839914329818665	0.315151618777874
Merged-chr11-11763528-4	chr11	11763440	11763640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025597, intron 7 of 7)	intron (NM_001025597, intron 7 of 7)	45422.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	7.75426007028748	7.77906380449131	7.99512750469248	8.08713098681297	7.6564804684192	7.7434890832542	7.94353747832312	7.69300739828034	-0.204373824220113	0.252417144739207	0.563681996153354
Merged-chr4-33284614-4	chr4	33284491	33284691	+	886.3095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25720.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	3.78157002275633	4.1197092616883	4.07437241929801	4.01284456807099	3.85214820439383	3.78601903983038	3.76740782169429	3.98178409919169	-0.436353612195071	0.322091687039188	0.633560664104514
Merged-chr12-80014542-4	chr12	80014463	80014663	+	852.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78299.0	NR_131074	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	3.79913522614668	4.23838386383452	4.09734321981855	4.09409049490189	3.31774676043631	3.86429117779174	3.98792345272557	4.22091292651256	-0.493360625241214	0.341373020654422	0.650442761387722
Merged-chr1-178242336-4	chr1	178242237	178242437	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024282, intron 2 of 4)	B2_Mm2|SINE|B2	54920.0	NM_024282	78825.0	Mm.440132	NM_024282	ENSMUSG00000026502	Desi2	5830417C01Rik|DeSI-2|Fam152a|Pppde1	desumoylating isopeptidase 2	protein-coding	5.0663229992408	5.62700266568116	5.55613032998901	5.21290590261645	5.58950288800832	5.99678659322039	5.47292889440062	5.9838862555405	0.670557766205317	0.0280800140435748	0.160371284570939
Merged-chr6-26454548-4	chr6	26454456	26454656	+	962.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	523130.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	4.98870579155309	4.97160634774305	5.61187904848072	4.57214810102853	5.00590043696285	4.76547492421297	5.03279587060481	5.14996193647672	-0.158191806958312	0.678581916346271	0.8681208945003
Merged-chr19-47003903-1	chr19	47003803	47004003	+	970.0	f0_balb.idr	intron (NM_001164363, intron 1 of 17)	Lx8b|LINE|L1	-10795.0	NM_146100	226180.0	Mm.276251	NM_146100	ENSMUSG00000034336	Ina	AV028420|NF-66|NF66	internexin neuronal intermediate filament protein, alpha	protein-coding	3.60519604049756	4.08956812228135	3.93804009022392	4.1337144206495	3.67909259431641	4.24503271864471	3.92128551414297	3.7801628397093	-0.134257121509968	0.779988198126976	0.914273965875713
Merged-chr6-40435246-3	chr6	40435229	40435429	+	986.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356375, intron 1 of 8)	CpG	806.0	NM_001356375	243780.0	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	3.39545118352547	3.75216523870268	4.29077290220119	3.60870280382668	3.49234114986119	3.51285489032985	3.50569548750799	3.45712062034151	-0.963367759651414	0.0758159915993359	0.297505227402376
Merged-chr16-32332761-4	chr16	32332643	32332843	+	874.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177633, intron 1 of 10)	CpG	491.0	NM_177633	224111.0	Mm.31275	NM_177633	ENSMUSG00000053774	Ubxn7	A630090P18|AI196514|Ubxd7|mKIAA0794	UBX domain protein 7	protein-coding	4.18541286193026	3.84828106563048	4.22759922808963	4.23745844134639	3.91312862571795	3.72907698245591	3.83471629818873	4.22486414564896	-0.529252734336429	0.239289652344428	0.549703033561985
Merged-chr13-9159506-4	chr13	9159382	9159582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 13 of 17)	intron (NM_172585, intron 13 of 17)	65601.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	6.67434333815979	7.16021700213978	6.95233106108277	6.81091565041043	6.93423085909424	6.83697583988863	6.49450615345965	6.4879102825035	-0.281846374130519	0.218438356226695	0.525739627979303
Merged-chr17-88528011-3	chr17	88527908	88528108	+	865.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2116.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	3.89239358409429	3.41127561592259	3.7488681281686	3.66893706640518	3.89697260580801	3.81552008472165	3.68211532313198	3.64091130441304	0.240724120875059	0.613706621523617	0.833470523619651
Merged-chr3-30602476-4	chr3	30602379	30602579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030557, exon 1 of 8)	5' UTR (NM_030557, exon 1 of 8)	392.0	NM_001289622	80732.0	Mm.200378	NM_030557	ENSMUSG00000037730	Mynn	2810011C24Rik|AA415053|AI661031|AW049392|Mynr|SBBIZ1	myoneurin	protein-coding	7.00493503436892	7.49359603205198	8.1619957307205	7.33728376789377	7.20401761212901	7.30008229815934	7.0613168559735	7.56631796022095	-0.365613174101344	0.169202654015069	0.46170705970244
Merged-chr3-144679394-4	chr3	144679282	144679482	+	955.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	40953.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	5.86221813267181	5.48192006639472	5.73678660587066	6.18224689299901	4.9269448855531	4.84271479614895	4.9438181046298	4.88130268461597	-1.72730957360505	6.86584058752238e-08	3.04678096745172e-06
Merged-chr4-62629680-4	chr4	62629563	62629763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019492, intron 14 of 19)	intron (NM_019492, intron 14 of 19)	9991.0	NM_134257	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	6.56043772005101	6.42166826562803	6.49615780320041	6.76710281964825	6.48997801825381	6.49310194989807	6.5438707316146	6.50819224493144	-0.107766281915574	0.61575138702111	0.834670881294526
Merged-chr12-111165303-4	chr12	111165197	111165397	+	911.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130987, intron 2 of 3)	intron (NR_130987, intron 2 of 3)	-1073.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	4.04234379879461	4.49988152379589	3.9867025020055	3.95379824963331	4.41379986374641	4.4229249433998	4.81596355420764	4.53850648484148	0.991868168920882	0.0159465560088961	0.109428206643611
Merged-chr1-88586329-4	chr1	88586191	88586391	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	34774.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	4.47844170419357	4.28269201251165	4.03932078735914	3.9914841283819	4.43579553140174	4.26589097180503	4.21502973596952	4.18525558415451	0.209714763154976	0.609982103063292	0.831398279446287
Merged-chr6-113748312-4	chr6	113748114	113748314	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347365, exon 24 of 24)	3' UTR (NM_001347365, exon 24 of 24)	-7533.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	3.47100749959307	3.24270449752187	3.47149696333617	3.37442639229327	3.21495965204771	3.21320254932349	3.40311472879774	3.83929385946873	0.174037363928299	0.751664813228653	0.902264711867851
Merged-chr5-102053058-4	chr5	102052965	102053165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	16856.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.79948526582743	5.50477533551399	6.15136891890154	5.89470313834513	5.65807502634634	5.49457001715727	5.79443513423129	5.95282635153493	-0.197995325937062	0.480325237452336	0.755893656347995
Merged-chr14-14347393-8	chr14	14347261	14347461	+	860.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008369, intron 2 of 11)	intron (NM_008369, intron 2 of 11)	866.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	4.59327979889214	4.3883447091744	4.35335126826366	3.80341116995224	4.29725533108823	4.23972447663092	4.37643238707202	4.82329527820789	0.348648696321638	0.432591537342942	0.722596762180336
Merged-chr6-97211357-4	chr6	97211282	97211482	+	708.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022992, intron 1 of 2)	intron (NM_022992, intron 1 of 2)	590.0	NM_022992	65106.0	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	3.96064506119579	3.84996099483136	4.25932891849076	3.95990422983287	4.02290563124101	4.1310583998717	3.68185550262337	3.80518275446063	-0.242946109591085	0.591756481397072	0.821817934352373
Merged-chr4-3801828-2	chr4	3801745	3801945	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	33810.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	2.74836079225486	2.5926913604576	2.55189881481576	2.24064384336673	2.45001225238806	2.85957348061972	2.79641268370586	2.68488316090197	0.821604265358704	0.254685507610382	0.566151176984747
Merged-chr19-24981602-4	chr19	24981543	24981743	+	896.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17886.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	4.16868988355009	4.03181164650688	4.03595605791057	4.10999545082185	3.75605911703132	4.00854036039736	3.76304139299013	4.12384052670729	-0.473418969214645	0.27511342623318	0.586927419764657
Merged-chr12-17710318-3	chr12	17710319	17710519	+	752.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	19610.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	2.2307243930066	2.24666695437624	2.14899356076301	2.01081837876985	2.8705752876489	2.62699730102755	2.50791767006677	2.63941684347874	3.49919882188976	1.75603117859678e-05	0.000454849138505605
Merged-chr5-32610306-4	chr5	32610219	32610419	+	897.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205133)	promoter-TSS (NM_001205133)	-852.0	NM_001205133	22612.0	Mm.4558	NM_009535	ENSMUSG00000014932	Yes1	Yes|p61-Yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding	4.16785852470694	4.48193666632187	4.35397169991753	4.59375110012683	4.34325458870531	4.39134867434062	4.33454784993896	4.21488679475848	-0.241581894247636	0.5339487519454	0.789042708189764
Merged-chr5-103655900-2	chr5	103655800	103656000	+	784.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163550)	promoter-TSS (NM_001163550)	-168.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	3.41478284524398	3.23636223956772	3.25042768236179	2.95068970220512	3.30704371793278	3.30286943285306	3.34890097372037	3.24871986744776	0.343341385667764	0.533817209764212	0.789042708189764
Merged-chr11-86993829-4	chr11	86993733	86993933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005341)	promoter-TSS (NM_001005341)	-71.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	7.08324070835792	6.84688093342862	6.81038753956378	6.60334454476257	6.78138492547078	6.77582045187669	6.89475168244521	6.62633249993946	-0.085191221375047	0.689790293412225	0.873623035418265
Merged-chr13-42331314-4	chr13	42331225	42331425	+	892.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29849.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	4.18415665731311	4.01530888010987	3.9245265588576	3.93688962860538	4.41667806822706	4.44839504041395	4.66223754189861	4.27329304045815	1.09473554140496	0.0054121551586518	0.0503670205194077
Merged-chr12-76822467-4	chr12	76822415	76822615	+	849.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134050)	promoter-TSS (NM_134050)	9.0	NM_134050	104886.0	Mm.172847	NM_134050	ENSMUSG00000021062	Rab15	2310012G06Rik|AI840042	RAB15, member RAS oncogene family	protein-coding	3.85429557898455	3.86635571983366	4.03562573344497	3.95948058238245	3.7512155046531	3.50771861980868	3.73876369677583	3.69807017475561	-0.740777319683886	0.10762974806962	0.361777012790559
Merged-chr4-115738712-8	chr4	115738585	115738785	+	923.59375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172698, exon 1 of 12)	exon (NM_172698, exon 1 of 12)	612.0	NM_172698	230648.0	Mm.283565	NM_172698	ENSMUSG00000034210	Efcab14	4732418C07Rik	EF-hand calcium binding domain 14	protein-coding	3.03064045147691	3.17612312395312	3.64971202980099	3.23222149663129	3.07850061841448	3.28041650142135	3.54120396688864	3.50605736583698	0.255766056451538	0.660123524085448	0.858724170764591
Merged-chr14-25759842-4	chr14	25759733	25759933	+	950.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 1 of 3)	intron (NM_001101433, intron 1 of 3)	9023.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	5.3741417951075	4.9516256728401	5.83324619904769	5.83154596803829	5.1810685149016	5.33087703064099	4.90385922004448	5.37130304598233	-0.618727326873067	0.0760871259695526	0.297882709388196
Merged-chr8-34878804-4	chr8	34878685	34878885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 5 of 26)	intron (NM_175091, intron 5 of 26)	71175.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	6.52989890832264	6.52722226809778	6.51509238649792	7.17742727516434	6.05288371057134	6.03719942740589	6.13387464139782	6.18209206725219	-0.950006671207669	0.000251866328485768	0.00439078946737411
Merged-chr2-127584668-4	chr2	127584517	127584717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028141)	promoter-TSS (NM_028141)	60.0	NM_001111029	72180.0	Mm.46715	NM_028141	ENSMUSG00000034800	Zfp661	2810405K07Rik|A1-5|Znf2	zinc finger protein 661	protein-coding	5.99944803564265	5.98206940452015	5.89764318034212	5.90925377477947	5.32843633588565	5.45325845042993	5.40964977403911	5.52218335057739	-0.877191238518478	0.000679522318031359	0.00988104577633383
Merged-chr7-49396630-1	chr7	49396530	49396730	+	967.0	f0_c57.idr	intron (NM_175272, intron 3 of 37)	B2_Mm2|SINE|B2	150441.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	5.47781234813553	4.82796308508059	5.50231125470176	4.74375811227831	4.63758487651137	4.94051537703722	4.89452568397697	5.08798388734194	-0.538430920578164	0.154872176900623	0.440269481011378
Merged-chr12-13269236-5	chr12	13269147	13269347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027706, exon 1 of 52)	exon (NM_027706, exon 1 of 52)	120.0	NM_027706	71169.0	Mm.177520	NM_027706	ENSMUSG00000020576	Nbas	4933425L03Rik|Nag	neuroblastoma amplified sequence	protein-coding	5.91099220896245	6.01317139021893	6.63249836856371	6.19149031542203	5.37861264901244	5.42960943162837	5.68735748179655	5.83798979550265	-1.00378973123743	0.000551846297090119	0.00835208751447535
Merged-chr10-122007899-4	chr10	122007789	122007989	+	938.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	39426.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	4.95999340133325	5.49638005037582	5.49412094960337	5.44669311074678	4.67599857996144	4.81104507208738	4.89997430999997	4.99374370438062	-1.01981197529633	0.00186086008071366	0.0221285058156243
Merged-chr11-75679191-4	chr11	75679096	75679296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277221)	promoter-TSS (NM_001277221)	-63.0	NM_001277219	12928.0	Mm.280125	NM_133656	ENSMUSG00000017776	Crk	Crk-I|Crk-II|Crk-III|Crk3|CrkIII|Crko|c-Crk|p38	v-crk avian sarcoma virus CT10 oncogene homolog	protein-coding	7.46441228904049	7.87357158624445	7.19943666035854	7.28005529186751	7.67612646815975	7.60413589486989	7.72533203408022	7.53499608169021	0.209044485032693	0.314450975738886	0.62641140752059
Merged-chr4-115835717-4	chr4	115835601	115835801	+	960.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175308, exon 4 of 4)	3' UTR (NM_175308, exon 4 of 4)	-3497.0	NM_001285488	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	4.13083571108521	4.28641487086867	4.27350245974691	4.49093090486209	4.41341734919429	3.91304072961616	4.42066715421133	4.47702840158062	0.0376168107502874	0.927708004997907	0.973615800862715
Merged-chr7-67425364-4	chr7	67425269	67425469	+	994.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52511.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	5.30591554233928	5.33315173836669	5.24620566928937	5.39794339076373	5.11620270900463	5.22157263725659	5.05629688699575	5.44290100845379	-0.211950114008643	0.470485603055972	0.749204562516411
Merged-chr19-32906997-4	chr19	32906876	32907076	+	831.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	149399.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	4.53919533313202	4.11589796959337	4.4612874352985	4.72788890067576	4.24997824165979	4.36762078678066	4.39997031132278	4.33067226514744	-0.371338203800741	0.350880403262394	0.658345714219092
Merged-chr17-70737625-2	chr17	70737525	70737725	+	882.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	109152.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	3.48036072098349	3.20367856936498	3.26617774589667	3.05770069977229	3.32145926280801	3.37927700461315	3.25394652775097	3.26446746137376	0.209880857514751	0.698183954607769	0.878239064521726
Merged-chr6-101556494-4	chr6	101556397	101556597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-178600.0	NM_018884	55983.0	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	5.60919490962543	5.46301705398809	5.92876010301123	5.9547507280063	5.34556061163177	5.36367876609469	5.68069335361953	5.17992876867222	-0.615801851157905	0.03782075741428	0.194398201912187
Merged-chr9-44477904-4	chr9	44477774	44477974	+	902.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4951.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	4.17611852626117	4.12821120529115	3.85546352464977	3.68433446085023	4.55601700126784	4.48459350512509	4.33393002767134	4.5431807777778	1.31001758304368	0.00143140032964701	0.0179702788494204
Merged-chr3-144699790-4	chr3	144699701	144699901	+	960.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019464, intron 5 of 8)	intron (NM_019464, intron 5 of 8)	20534.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	4.18646886074935	4.40624213217781	4.08327355167296	4.54721043378713	4.48290735227212	4.45682594290672	4.43608628029675	4.53206501685064	0.31956031084922	0.414159060001262	0.708997997350341
Merged-chr15-78903435-4	chr15	78903345	78903545	+	868.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316685, intron 6 of 17)	intron (NM_001316685, intron 6 of 17)	3677.0	NM_009164	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	4.02356467824256	3.81812503960407	3.82750213976675	3.74259450136072	4.22547286418629	4.23728613256526	3.64446117205323	3.77122877707432	0.41798712707976	0.371977758038807	0.675938343451834
Merged-chr5-121452490-4	chr5	121452383	121452583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026129)	promoter-TSS (NM_026129)	-9.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	7.83730045848313	8.16035724005419	7.77626350504365	7.54038511997859	7.96809716603416	8.17975904884713	7.97713634773891	7.90708202768514	0.217945273705701	0.260459834256203	0.572275439384006
Merged-chr16-30599622-4	chr16	30599467	30599667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177632)	promoter-TSS (NM_177632)	-156.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	7.69959244242851	7.84380204939107	7.9547163745416	7.55171069951256	7.81705018468007	7.9584055617113	7.81836734211092	7.54643223324743	0.0386271650800654	0.835497395854271	0.937451427185292
Merged-chr3-90432866-5	chr3	90432733	90432933	+	928.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145540, exon 1 of 30)	exon (NM_145540, exon 1 of 30)	803.0	NM_145540	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	3.39329681249809	3.21332971850696	3.58694762029903	3.10568393019573	2.89894874523838	3.07658924586709	3.09186136011646	3.44282700499412	-0.726631903601887	0.22808614226074	0.536940849317939
Merged-chr11-80302814-4	chr11	80302712	80302912	+	922.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139228, intron 2 of 8)	intron (NM_139228, intron 2 of 8)	1900.0	NM_139228	246104.0	Mm.194148	NM_139228	ENSMUSG00000017692	Rhbdl3	AI847581|Rhbdl4|Rhomr1|Vrho	rhomboid like 3	protein-coding	4.35373548203065	4.4416740136848	3.72103169803591	3.99170133767621	4.27871494457742	4.01924516367508	4.08193728215802	3.8945189062626	-0.185647502235757	0.688478853944034	0.872791361493391
Merged-chr8-105171113-2	chr8	105171013	105171213	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161458, intron 1 of 5)	CpG	439.0	NM_001161458	12400.0	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	3.6624748518776	3.73533628965095	3.98096075700725	3.95883517862641	3.84846927643322	3.89780732977787	4.09580929641771	4.15349101098688	0.418753047515739	0.348338963076301	0.656203091647814
Merged-chr6-98499951-4	chr6	98499858	98500058	+	770.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157204.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	3.80627777389106	3.40565087897544	3.90620729376957	4.40687888296469	3.35441135788328	3.92886475422548	3.98013689827993	3.64004380153243	-0.54160498188877	0.340145776925025	0.649212461324196
Merged-chr2-117945144-3	chr2	117945044	117945244	+	708.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	123216.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	3.46587593806413	3.52311980858981	3.84740270604783	3.69248427535566	3.22716975528817	3.33517584699542	3.27691707557367	3.40774404454388	-1.16266288649219	0.0272954936300956	0.157427902429191
Merged-chr3-84842999-4	chr3	84842895	84843095	+	985.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 1 of 13)	RLTR31B2|LTR|ERVK	-21150.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	5.19017043684652	5.40653862968117	4.98845293823027	4.96224089279705	5.22133135537244	4.929258266316	5.49065826693088	5.02114274452409	0.0843971731186406	0.796687402407278	0.921337659177495
Merged-chr5-140392854-4	chr5	140392704	140392904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3496.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	6.58934562344294	6.77773163112243	6.90909193725115	6.83633635901241	6.92367508497152	6.62924526611729	6.82208913440741	6.72594771278189	0.000582692268538324	0.997729670810135	0.999049029170635
Merged-chr19-8829850-4	chr19	8829727	8829927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081196, exon 11 of 14)	exon (NM_001081196, exon 11 of 14)	-7640.0	NM_001136064	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	6.03355399340029	6.12177817243069	6.55875166548934	6.19565386324875	5.82125268017698	5.57618185469678	5.89459643834121	5.61114797832202	-0.792719399095596	0.00254355552316408	0.0281042748499373
Merged-chr5-105701575-4	chr5	105701452	105701652	+	825.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	742.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	4.54237072542358	4.34167380105923	4.50497705442228	3.92494894056822	4.16412857569374	4.71314105583012	4.08145651266735	4.42216246590642	0.0593161843189642	0.892399129263463	0.959702310634513
Merged-chr5-92499666-4	chr5	92499564	92499764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	5993.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	7.16682677263967	7.01106270227552	7.65283887960551	7.10593463075154	6.83002209071717	6.58794646357901	6.98105714539502	6.75109195821897	-0.628642565539847	0.00568429777830759	0.0522472406459396
Merged-chr4-132463975-4	chr4	132463878	132464078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026039)	promoter-TSS (NM_026039)	-57.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	5.6857018305747	5.61673886621545	5.40434939932801	5.38139898830817	5.88813547017896	5.98093356806327	5.60652808595076	5.91319108966798	0.560894687141731	0.034646068951574	0.184282808392175
Merged-chr14-122107575-3	chr14	122107488	122107688	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015586)	promoter-TSS (NR_015586)	506.0	NM_080556	68059.0	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	5.36635158239988	5.36274337499175	5.33799688885502	5.30967242660233	5.39445097962957	4.93222340847239	5.25126958946702	5.6921719986829	0.0167337383535073	0.956523080049622	0.984691114511791
Merged-chr8-111939990-4	chr8	111939890	111940090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026693)	promoter-TSS (NM_026693)	-713.0	NM_026693	93739.0	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	5.52158007651181	5.16697726980613	4.68404055086278	5.10477183745908	5.27424463696828	5.51017524483185	5.06201038081331	5.33395232251481	0.279542227925291	0.402318072326294	0.69987042232112
Merged-chr3-59235601-4	chr3	59235501	59235701	+	649.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 19 of 43)	intron (NM_177855, intron 19 of 43)	-24719.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	3.80289520584331	3.88721178062878	3.90796998363177	4.16187327756579	4.06398884559273	3.86650435495884	3.84135527220735	4.09194788805487	0.0321718053640916	0.942248558662508	0.979062797089676
Merged-chr4-134767991-4	chr4	134767870	134768070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145554)	promoter-TSS (NM_145554)	34.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	5.85070703661086	5.81064674559947	5.82858901687413	5.41276265588249	5.96652491245651	5.7190932409518	5.75161005995293	5.99851525448901	0.248284617187017	0.35799082232423	0.664045780684761
Merged-chr6-56608396-3	chr6	56608285	56608485	+	954.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96314.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	3.55633689897978	4.01682594572126	3.96744040497295	4.27253112830442	3.69868706807628	3.67394602049349	3.48311575791698	3.42885435084275	-1.2327793989006	0.0171425406143638	0.115242623572894
Merged-chr6-28486606-4	chr6	28486520	28486720	+	916.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	intron (NM_019776, intron 1 of 23)	6272.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	4.17310144052067	4.08697545651597	3.73044717226668	4.17010184132457	4.26295110206763	4.34755908516675	4.24545140027515	4.70137650975571	0.828215654072742	0.0520016263292703	0.237392493617953
Merged-chr9-78526317-3	chr9	78526233	78526433	+	907.955566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44609.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	3.3945975752088	3.46617615578682	3.50587873985963	3.7034808356273	3.1786223177321	3.44916034223859	3.26298176464639	3.65367865014313	-0.470488330516907	0.380525013728939	0.682947704213538
Merged-chr10-42031252-4	chr10	42031136	42031336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12854.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	5.14008263910018	5.17887797446816	5.55641161769559	4.99834996544127	5.07955517206423	5.02689138750659	5.35244126402505	5.10422592276662	-0.139540217476678	0.662296177300216	0.859981020560266
Merged-chr7-100944055-1	chr7	100943955	100944155	+	706.0	f0_balb.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	-11894.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	4.52330580981913	4.35868019194271	4.66458227920385	4.19978233789933	4.31512810297791	4.26150919887707	4.06712087633592	4.08150506976188	-0.593087926615665	0.147639409065973	0.42886163474971
Merged-chr1-144300843-4	chr1	144300734	144300934	+	938.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-51730.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	4.65401087033999	4.41494806622879	4.03500010135078	4.70539035890318	4.54872323019945	4.59644493772907	3.96220407175626	4.33480665745928	-0.229449822793605	0.599357038012022	0.826316125212269
Merged-chr8-23028324-4	chr8	23028179	23028379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110783, intron 1 of 43)	intron (NM_001110783, intron 1 of 43)	-6820.0	NM_001277281	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	4.87527797847397	4.65966883349303	5.04392575138365	4.86822610953551	4.47824553420043	5.08409197087541	4.81657889298406	5.07144003642438	0.0147145431842226	0.967031734735942	0.988445106003556
Merged-chr18-61536700-7	chr18	61536588	61536788	+	991.347595	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177828)	promoter-TSS (NM_177828)	-152.0	NM_177828	328967.0	Mm.488098	NM_177828	ENSMUSG00000045094	Arhgef37	4933429F08Rik	Rho guanine nucleotide exchange factor (GEF) 37	protein-coding	3.9463845054021	3.84471142704662	4.2725748175663	3.88662242575183	4.21454183201628	4.17337579775989	3.98208186925109	4.42383221852883	0.568052149478845	0.181982437706035	0.478656463616195
Merged-chr9-61432009-3	chr9	61431914	61432114	+	923.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59648.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	4.5655132204452	4.58163682594615	4.52844387978072	4.06706101192433	4.75217540365226	4.19853153938323	4.20843386684092	4.12334959751884	-0.188884929218099	0.666094902694404	0.861863428748523
Merged-chr3-95740713-4	chr3	95740613	95740813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356965, intron 17 of 17)	intron (NM_001356965, intron 17 of 17)	-1144.0	NM_001252653	13601.0	Mm.3433	NM_007899	ENSMUSG00000028108	Ecm1	AI663821|p85	extracellular matrix protein 1	protein-coding	6.80728994909745	6.71876119869254	6.45735169018333	6.91431624025931	7.05711394898015	6.79014453407351	6.71715772639291	6.91032195444613	0.189951227965024	0.378438897025271	0.681015883383774
Merged-chr4-150855840-3	chr4	150855754	150855954	+	719.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040649)	promoter-TSS (NR_040649)	784.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	3.09288335892681	3.37551222288291	3.22607231536079	3.50912077942059	3.53054694622115	3.57202844929424	3.2763256600743	3.50724965045634	0.522018168876658	0.338433937737326	0.648017142470682
Merged-chr17-46556335-4	chr17	46556224	46556424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020493)	promoter-TSS (NM_020493)	-162.0	NM_020493	20807.0	Mm.45044	NM_020493	ENSMUSG00000015605	Srf	AW049942|AW240594	serum response factor	protein-coding	8.50554002344655	8.60369963618848	8.38386067679073	8.4067642441139	8.44440770755358	8.69448408318821	8.48214988746142	8.5014089974786	0.0690473562407174	0.654566666397118	0.855659697629251
Merged-chr1-172082746-4	chr1	172082664	172082864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021607)	promoter-TSS (NM_021607)	-15.0	NM_021607	59287.0	Mm.218203	NM_021607	ENSMUSG00000003458	Ncstn	9430068N19Rik|AA727311|Aph2|D1Dau13e|Kiaa0253|Nct|mKIAA0253	nicastrin	protein-coding	7.04246112909134	6.81413162185965	6.73141290077478	6.75904420576018	7.14602729509822	7.25551419458209	7.16542713496834	6.91243453111456	0.4013044912297	0.0429978154662581	0.210969980497193
Merged-chr2-10048094-4	chr2	10048018	10048218	+	823.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027748, intron 1 of 6)	CpG	491.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	4.49161247754435	4.18689751075911	4.40863231388492	4.53026802881736	4.4135669206806	4.53795111096065	4.51113377289107	4.52924822158336	0.174103418654493	0.638142015639807	0.847040716325261
Merged-chr1-180300469-4	chr1	180300380	180300580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-29996.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	7.05085259731141	7.41939849743938	7.43448029653569	7.25565058665502	7.17093108534187	7.27961681297061	7.52255148262334	7.39110882345772	0.0604738449223055	0.755375716858885	0.903681605194713
Merged-chr6-135249901-4	chr6	135249740	135249940	+	835.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080553, intron 1 of 5)	intron (NM_001080553, intron 1 of 5)	-1956.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	3.8101979788057	3.93001453078389	3.45319238670161	3.42317606503375	3.14687028047809	3.50929709611369	3.38076422574636	3.61663947299962	-0.825341703934745	0.132945008391881	0.406097877964367
Merged-chr7-24601131-4	chr7	24601044	24601244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023154, intron 4 of 7)	intron (NM_023154, intron 4 of 7)	-10184.0	NM_001102613	232970.0	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	5.87241327984008	5.67231972975063	5.39181916327152	5.62667271593394	5.50784778488208	5.40681828615192	5.73416484718976	5.44827222443681	-0.202711584088114	0.46476547206003	0.745554240368249
Merged-chr6-28424013-3	chr6	28423904	28424104	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007480, intron 1 of 5)	intron (NM_007480, intron 1 of 5)	400.0	NM_007480	11844.0	Mm.389075	NM_007480	ENSMUSG00000020440	Arf5	-	ADP-ribosylation factor 5	protein-coding	5.0229653021676	4.76591490090165	4.78250240487484	4.51735067713938	4.83399934468178	4.7550563845585	4.93522876284205	4.98862472907242	0.236075710512658	0.490506955615011	0.762251978763558
Merged-chr5-99361961-4	chr5	99361886	99362086	+	875.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-109059.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.27584032951544	3.6708364407841	3.96455065025688	4.38107058465748	4.24291048378278	3.92417621164618	3.9970814076471	3.857340395433	-0.239956826910529	0.614053638411917	0.833609107549057
Merged-chr17-33702378-4	chr17	33702256	33702456	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252480, intron 3 of 4)	B1F2|SINE|Alu	16321.0	NM_145486	224703.0	Mm.311439	NM_145486	ENSMUSG00000079557	March2	9530046H09Rik|MARCH-II	membrane-associated ring finger (C3HC4) 2	protein-coding	4.93445674019447	5.0322143995985	5.25059614221525	4.63795389620272	5.31540233848701	4.69983228391551	4.80039886743593	5.130214952472	0.104506541029169	0.773125673419889	0.91120348895326
Merged-chr2-126600683-4	chr2	126600595	126600795	+	931.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008230, intron 9 of 11)	intron (NM_008230, intron 9 of 11)	17983.0	NM_008230	15186.0	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	5.15926959732761	4.7451783059646	5.37848883048886	5.04104705111931	4.95254486747831	4.59719800382713	4.94296316798525	4.9284000510436	-0.441290118483005	0.199719527269036	0.501617368789087
Merged-chr8-92853745-4	chr8	92853655	92853855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008610)	TTS (NM_008610)	-1578.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	4.97412259038968	4.9412914757307	5.27006353489524	4.8633616637945	5.49229099060472	5.63025328653409	5.15334479025361	4.68481061326392	0.520053187163651	0.143423241350541	0.4217205360446
Merged-chr2-181193208-4	chr2	181193100	181193300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5953.0	NM_001356427	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	5.46855665212367	5.26995317364638	6.03211759181974	6.10234375170419	5.38212156763772	5.3538768296464	5.75252370586086	5.63142030380856	-0.402837813449278	0.215246036002905	0.521317417967632
Merged-chr11-115694198-4	chr11	115694108	115694308	+	896.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	5326.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	4.32304043601511	3.98591030530925	3.73140692865639	4.43816253264642	4.13680729746541	4.0287329215834	3.89102970355055	4.35975431801412	-0.114953842944311	0.805407760050683	0.925178766347246
Merged-chr8-86888750-4	chr8	86888641	86888841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3483.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	6.65655475135478	6.51682509612509	6.83781804809545	6.78754321575422	6.4285233979863	6.4934594761925	6.65325625553582	6.36965556738444	-0.320731946307002	0.13379457542852	0.407275681558906
Merged-chr19-56770801-4	chr19	56770701	56770901	+	950.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42882.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	4.70537686711814	4.59282844881252	4.66962648224567	4.78488141569772	4.17422494526907	4.60043583536979	4.68358977004613	4.22985059907676	-0.590834965450818	0.119877958992619	0.383272391103427
Merged-chr11-98849406-3	chr11	98849304	98849504	+	787.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001080925, exon 10 of 15)	exon (NM_001080925, exon 10 of 15)	12619.0	NM_001080925	268480.0	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	3.18653047517132	3.1848570628549	3.46124751741008	3.29480266431598	3.07799204481141	3.02574948712907	3.23451280849592	3.55391809259222	-0.176927010947415	0.756466211331571	0.904341761107993
Merged-chr10-26799821-4	chr10	26799716	26799916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	27304.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	8.82808591867845	8.85175197384342	9.16325490520866	8.92060023502408	8.66570019013258	8.73486710493481	8.77781750198923	8.56147477713678	-0.324020633034492	0.0369600681335765	0.191552402044549
Merged-chr10-41615631-4	chr10	41615532	41615732	+	975.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 24 of 47)	intron (NM_001358562, intron 24 of 47)	47616.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	4.98744182960914	4.58891058213556	4.70970377131401	5.1620390145763	5.26049986348851	5.2657304770509	5.0664922634071	5.59668499274085	0.769675211193896	0.0262961527966394	0.153685348543558
Merged-chr10-28074805-3	chr10	28074682	28074882	+	756.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008983)	promoter-TSS (NM_008983)	-38.0	NM_001359355	19272.0	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding	4.37424482859979	4.46521763534647	4.48863567833993	4.98341947002701	3.56019906736197	3.84611407356578	3.50140444822605	3.71863392383696	-2.72205212192783	6.07001698275486e-08	2.72076661722612e-06
Merged-chr10-8061908-3	chr10	8061797	8061997	+	859.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105774.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	3.32370720892587	3.47999514209968	3.48607943493742	3.60062182246324	3.18674330093469	3.24882790645209	3.25383623113468	3.26366408801244	-0.908097249110676	0.0874143527161864	0.322487105420619
Merged-chr13-30972317-4	chr13	30972203	30972403	+	845.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025588, intron 1 of 27)	ORR1E|LTR|ERVL-MaLR	1744.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	4.12503561335755	4.07391130606433	4.12566254681464	3.99553909403037	4.17655003705872	4.05349203099894	3.86316385399817	4.12312701881943	-0.0244949085664949	0.952886411136023	0.983276598943455
Merged-chr8-94183364-4	chr8	94183251	94183451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4262.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	7.53625062424345	7.46880614110764	7.5645223612288	7.83337727639438	7.53888523976941	7.54996994199275	7.48215567551693	7.58573240581425	-0.106769686143528	0.5531215073882	0.799974396526481
Merged-chr7-59248680-1	chr7	59248580	59248780	+	854.0	f0_balb.idr	intron (NM_011668, intron 4 of 12)	L1MB2|LINE|L1	19930.0	NM_173010	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	3.01390422209228	2.64146988860179	2.79545368870541	3.17253284926759	2.31957258453411	2.63757498401612	2.45107712688111	2.37723174219325	-2.92132014105283	0.000751982470764504	0.0107148164853169
Merged-chr11-45945016-4	chr11	45944919	45945119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028185)	promoter-TSS (NM_028185)	-84.0	NM_028185	72290.0	Mm.249827	NM_028185	ENSMUSG00000044847	Lsm11	2210404M20Rik|AV079530	U7 snRNP-specific Sm-like protein LSM11	protein-coding	8.02480299457408	8.28843810972198	8.14987572453348	8.06865020099577	8.32324356570017	8.29612284697551	8.37259291970636	8.06778773520242	0.173180400354765	0.289769410748422	0.601835280197891
Merged-chr4-119991923-2	chr4	119991822	119992022	+	799.333374	f0_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	-169284.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	3.67417051168966	3.80156802462242	3.81461397761132	3.6043002541189	3.23535785198204	3.31763032118237	3.55757383801466	3.337004140187	-1.22449401212052	0.0184768518959102	0.121441664951291
Merged-chr6-125367886-4	chr6	125367793	125367993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198604, intron 14 of 16)	intron (NM_198604, intron 14 of 16)	12611.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	8.16222388824251	8.11005759531085	8.30212960714488	8.27341631235595	8.05297071266234	8.17120646337552	8.33207112678923	8.01622169495784	-0.0883386074036129	0.587913671445352	0.819422883154335
Merged-chr2-102002600-3	chr2	102002510	102002710	+	654.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178886, intron 4 of 5)	intron (NM_178886, intron 4 of 5)	116348.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	2.31415387120766	2.40696843086492	2.31431737070123	2.23005670170212	3.05308307636484	2.79302039472159	2.90428779733088	2.86102066100429	3.41258356427515	5.81356755593901e-06	0.000169661305889374
Merged-chr11-60209343-3	chr11	60209219	60209419	+	838.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358315, intron 1 of 18)	intron (NM_001358315, intron 1 of 18)	1152.0	NM_001358314	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	3.05394237032716	2.84065539716958	2.88329927651408	2.9820554514967	2.68642083285755	2.63947905060735	2.81144065094158	2.9982112596881	-0.708662447663414	0.267504194449512	0.579184214653136
Merged-chr4-128729443-2	chr4	128729343	128729543	+	823.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	1872.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	3.11450837898121	3.0003548665124	3.05707216964602	2.68512511913773	3.03606060790376	3.16857949263272	2.92314087551838	3.05544114106891	0.352128841419693	0.561679955552541	0.805087044770823
Merged-chr16-90710498-3	chr16	90710412	90710612	+	680.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16859.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	3.20928772700607	3.14954181746461	3.47092525470483	3.22889872759001	3.14685151792499	3.19798804686874	3.13925050382098	3.08673748620828	-0.477372151818298	0.387570484076211	0.688440782422787
Merged-chr18-89607625-4	chr18	89607531	89607731	+	969.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039173, intron 1 of 7)	B4A|SINE|B4	161505.0	NM_001039173	623279.0	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	5.20668526344437	5.08258921003203	5.20757686363627	5.58033149512296	4.90911929454772	4.88921606391616	5.9280760262865	5.20397075222589	0.0260054151433296	0.945410450577381	0.980481262099098
Merged-chr9-116099143-4	chr9	116099047	116099247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	76216.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.68998205135418	5.39951236883551	5.98851543201348	5.867102722035	5.05612240864797	5.51003459650411	5.24133420616418	5.42084445584417	-0.78031157761642	0.00940691317622594	0.0755642334917714
Merged-chr15-74528273-3	chr15	74528198	74528398	+	682.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359759, intron 1 of 30)	MIR|SINE|MIR	12102.0	NM_001359759	107831.0	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding	3.09810897564821	3.14700564505514	3.32201776609617	3.2545967996717	2.84445424086406	3.00934809473338	3.14630751314274	3.26783558302443	-0.552840094972384	0.344879247160904	0.653272604871241
Merged-chr16-35874622-4	chr16	35874512	35874712	+	903.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR84b|LTR|ERVL	-3230.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	4.69911722556	4.84684540495052	4.57332948937769	4.84213555421148	5.10743749319647	4.79295490308413	4.71734969815277	4.95068930165951	0.316648299566132	0.350134390654824	0.657682371679415
Merged-chr2-133552877-6	chr2	133552749	133552949	+	935.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007553, exon 1 of 3)	5' UTR (NM_007553, exon 1 of 3)	690.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	4.91004329626077	4.65656182471257	4.60682403111324	4.60401791704868	4.30771632679599	4.38595426427442	4.13633409223536	4.48367685959211	-0.827171712824308	0.0280685281098906	0.160318549376818
Merged-chr9-99378208-4	chr9	99378124	99378324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB3_1-LTR_MM|LTR|ERVK	-19694.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	5.23143769390289	4.99426022415461	5.63800081839783	5.22129092730442	5.49641582359503	5.04757280989185	5.41065432454553	5.37882520348947	0.121566114934252	0.699599667448639	0.878870538816214
Merged-chr10-62920657-4	chr10	62920563	62920763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175194)	promoter-TSS (NM_175194)	30.0	NM_175194	73132.0	Mm.37457	NM_175194	ENSMUSG00000071253	Slc25a16	3110021G18Rik|GDA|GDC|HGT.1|ML7	solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16	protein-coding	7.06088275818826	7.02644509263257	6.7684205470009	6.69257997959159	7.25514752098888	7.13987195424713	7.25351169626558	6.80790614153767	0.335752659607851	0.114968920847523	0.375229163052217
Merged-chr7-31127085-4	chr7	31126945	31127145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011322)	promoter-TSS (NM_011322)	-22.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	5.96396153027072	5.86029101677074	5.74536065266827	6.09857747122762	6.18268639985219	6.30685169508906	5.86594228279754	6.14770354186868	0.308793887873106	0.217673540878967	0.524640181886301
Merged-chr6-48968115-3	chr6	48968013	48968213	+	786.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-7030.0	NM_001029987	243376.0	Mm.244112	NM_001029987	ENSMUSG00000068536	Doxl2	-	diamine oxidase-like protein 2	protein-coding	3.51156715670601	3.96330992666839	3.4477553295525	3.99735300056469	3.74042187712488	3.8062739284725	3.91976259667389	3.88874536362663	0.198967867922109	0.690880416561491	0.874212066600839
Merged-chr11-23565926-3	chr11	23565825	23566025	+	640.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-7083.0	NR_004857	100134990.0	Mm.247328	NR_004857	ENSMUSG00000085415	Selenok-ps1	Gm12060	selenoprotein K, pseudogene 1	pseudo	2.95508137031992	3.02018165731065	3.01698757565757	3.11586664739065	3.05392096691291	3.06228061194641	3.00645277958314	3.01551410023465	0.000717816355050445	0.998994465224193	0.999515665343703
Merged-chr9-59749086-4	chr9	59748982	59749182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172069, intron 1 of 2)	intron (NM_001172069, intron 1 of 2)	1567.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	6.14671789748373	6.36574903639382	6.82726960871441	6.62875799513064	6.32173942022082	6.36737766731287	6.19895486368439	6.35963418002222	-0.310108199399941	0.20006568876111	0.502008519065359
Merged-chr17-80323960-4	chr17	80323821	80324021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145452, intron 1 of 17)	intron (NM_001145452, intron 1 of 17)	16514.0	NM_001145452	381112.0	Mm.360004	NM_001145452	ENSMUSG00000054901	Arhgef33	Gm941	Rho guanine nucleotide exchange factor (GEF) 33	protein-coding	5.57163548668713	6.0240358975618	5.78294335974792	5.98492431296782	5.61327434082766	5.85789181163407	5.89029427564044	5.65162404534236	-0.185516729105192	0.48535947169425	0.759250183194696
Merged-chr2-11426884-4	chr2	11426778	11426978	+	996.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-28378.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	5.19639118977026	5.61427217199239	5.83462653921168	5.93795841156212	5.04454508960724	5.37569414878941	5.4475670612925	5.08616986219125	-0.781246393742639	0.0142248050962964	0.101038821650114
Merged-chr1-45826973-4	chr1	45826895	45827095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31829.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	5.67034716523692	5.28309846346583	5.76569690119947	6.25490660794503	5.56510418796609	5.27438028413422	5.27840525265296	5.16346392436548	-0.804622629022787	0.0161425996552909	0.110333599084305
Merged-chr9-78175987-4	chr9	78175898	78176098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040401)	promoter-TSS (NR_040401)	84.0	NR_040401	320295.0	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	6.60392801772344	6.76683141442951	7.08773432673728	6.54828037604725	6.78805934477874	6.43837579861056	6.58711610894643	6.53507909923403	-0.225011879966676	0.329186282014979	0.640453018367131
Merged-chr6-39007337-4	chr6	39007207	39007407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 5 of 12)	L2c|LINE|L2	60279.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	5.7480128031087	6.10179444021163	5.80025549162899	6.21309997533475	5.69662905837338	5.8734932012783	6.2088485790161	6.06623807429353	-0.0455244775051283	0.867033437339192	0.950229772527851
Merged-chr10-94471654-4	chr10	94471547	94471747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-43210.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	7.56761372039841	7.5918160747462	7.87211594337117	8.23010379455316	7.48922488215589	6.9759980425142	7.74618271529917	7.80136646871085	-0.404866589339649	0.0983186895314478	0.343797158306464
Merged-chr3-32617002-2	chr3	32616902	32617102	+	625.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013531)	promoter-TSS (NM_013531)	-412.0	NM_013531	14696.0	Mm.139192	NM_013531	ENSMUSG00000027669	Gnb4	6720453A21Rik|G(beta)4	guanine nucleotide binding protein (G protein), beta 4	protein-coding	2.74463573054152	2.65281643285232	2.7449829368517	2.4744693171106	2.70113960367488	2.85255579224169	2.73494192906384	2.61361098547126	0.384951946806093	0.553998187192771	0.800500121223594
Merged-chr18-65934993-4	chr18	65934904	65935104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013833, exon 3 of 3)	exon (NM_013833, exon 3 of 3)	4085.0	NM_013833	19434.0	Mm.431047	NM_013833	ENSMUSG00000024518	Rax	7530406A22Rik|E130303K03Rik|Rx|ey-1|ey1	retina and anterior neural fold homeobox	protein-coding	5.74520791903209	5.69298257471868	5.9970658506217	6.05702022084224	5.6623350032246	5.40838266835231	5.88131402473379	6.18385514922646	-0.123090976599535	0.669220108709296	0.863427252946745
Merged-chr11-104352315-3	chr11	104352215	104352415	+	723.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 7 of 14)	ID4_|SINE|ID	89976.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	3.18876985118892	3.08975979281633	3.05358377713254	3.41165556045658	3.50220550123723	3.36591838652536	3.24049682771644	3.87077626906676	1.06718155684261	0.0671706802235238	0.27649448697071
Merged-chr16-11070184-5	chr16	11070090	11070290	+	899.8350220000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009223, intron 1 of 1)	intron (NM_009223, intron 1 of 1)	3892.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	3.9957883661381	4.20676435010864	4.19018240585839	4.35683826809237	3.96897577528793	4.00937228943203	4.33812150999869	4.27439199630252	-0.133051250553707	0.750743345740659	0.901855648088396
Merged-chr3-36772147-2	chr3	36772047	36772247	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81980.0	NM_019510	22065.0	Mm.74363	NM_019510	ENSMUSG00000027716	Trpc3	Mwk|Trcp3|Trp3|Trrp3	transient receptor potential cation channel, subfamily C, member 3	protein-coding	2.95162409749051	2.97993137927812	3.20025318023327	3.06144724596534	2.8653122588125	3.36976871856352	3.18751169833135	3.30665185247523	0.54221257457747	0.356215657147765	0.662704502355483
Merged-chr2-17741685-4	chr2	17741596	17741796	+	912.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10628.0	NM_028757	74103.0	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	4.55373629827639	4.91309185548153	4.51301651217828	4.09520877822758	4.66555821665048	4.64518347580664	4.64901566380006	4.42313643953476	0.132848870603831	0.741724405072824	0.898379424940426
Merged-chr4-139380560-4	chr4	139380482	139380682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160319)	promoter-TSS (NM_001160319)	-77.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	8.01985341875992	8.27526704304616	7.43369889750229	7.70427097902923	8.40805214288013	8.607210667446	8.14171283242835	8.35310783135191	0.627467920518511	0.00398827427573024	0.0399720324798934
Merged-chr15-38519438-4	chr15	38519330	38519530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102458)	promoter-TSS (NM_001102458)	-164.0	NM_018745	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	8.37335491542729	8.62170930719526	8.44856646659309	8.27495390433788	8.72389753804424	8.53053305677203	8.80471273115105	8.30801058754872	0.220802496701276	0.21273730439138	0.517670706102327
Merged-chr15-38518334-4	chr15	38518229	38518429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301688, intron 1 of 11)	CpG	937.0	NM_001301688	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	9.09902860332267	9.19613942423777	9.30443294574573	9.21898148030196	9.11799451983094	9.32445514884443	9.38850184706491	9.14737385152012	0.0502272725277103	0.73091422867741	0.893360530995078
Merged-chr2-77280277-4	chr2	77280184	77280384	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 1 of 17)	CpG	308.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	4.50559538440744	4.9982953898063	5.18525015747703	4.61787714019315	4.99762093466469	5.23478602701086	4.97176097585101	5.15204245231184	0.481271520839255	0.167125678904232	0.458590543512887
Merged-chr9-67001275-4	chr9	67001172	67001372	+	877.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25788.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	3.90688368477152	4.42425053003738	3.8513818751246	3.9090039249838	4.2052729853367	4.28240835597018	4.13820025724417	4.19851017931377	0.416317834380812	0.334231447315115	0.644805241742718
Merged-chr11-69016004-4	chr11	69015918	69016118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001013256, exon 1 of 23)	5' UTR (NM_001013256, exon 1 of 23)	107.0	NM_001013256	68964.0	Mm.285785	NM_001013256	ENSMUSG00000020898	Ctc1	1500010J02Rik|AAF-132|AAF132	CTS telomere maintenance complex component 1	protein-coding	7.43187046055638	7.662358645029	7.27138764845485	7.14978957727253	7.3099684217881	7.42680352504857	7.38681120424082	7.12971208078061	-0.0936484113956526	0.641799446817409	0.84891099922649
Merged-chr17-48300459-4	chr17	48300418	48300618	+	839.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033405, exon 1 of 5)	5' UTR (NM_001033405, exon 1 of 5)	480.0	NM_001360121	328833.0	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	3.72261096192112	3.91056152547495	3.87256436736988	3.58565071939443	3.8979079637805	3.54348020461948	3.65496155528809	3.87021481022747	-0.0400344278682052	0.932847981759109	0.97579852590353
Merged-chr7-29134910-4	chr7	29134804	29135004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145149)	promoter-TSS (NM_145149)	-29.0	NM_001174155	233046.0	Mm.465324	NM_145149	ENSMUSG00000030589	Rasgrp4	-	RAS guanyl releasing protein 4	protein-coding	5.94168132455742	5.77253159251799	5.7883881395819	5.24666148869191	6.09169849678883	5.49007476014785	5.75883961597659	5.46613115703389	0.070066766300628	0.824469095120112	0.932696938095671
Merged-chr7-100661493-3	chr7	100661415	100661615	+	679.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163182, intron 2 of 7)	intron (NM_001163182, intron 2 of 7)	879.0	NM_013746	27276.0	Mm.491216	NM_013746	ENSMUSG00000030701	Plekhb1	AI315628|PHR1|Phret1|evt-1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding	3.4363225248182	3.79862032264301	3.84767257345198	3.9321227265116	3.40890400300591	3.42353691081403	3.6435053922829	3.24066903695951	-1.10051724029193	0.0369896867263337	0.191650088185595
Merged-chr9-77754703-6	chr9	77754643	77754843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151778, exon 1 of 17)	non-coding (NR_151778, exon 1 of 17)	208.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	7.27999144387262	7.33936423592583	7.55868958186693	7.08159999671124	7.53626338701308	7.73546583667509	7.307335154366	6.90528167032728	0.119478206498409	0.604383890876442	0.828475926678239
Merged-chr10-128779675-4	chr10	128779575	128779775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11235.0	NM_001164197	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	8.17810145998084	8.17585330167605	8.17339876603431	8.04987465130692	8.19345412391338	8.36308382627375	8.06006906541549	8.14355149045445	0.0668571029961363	0.673366663763246	0.865717176504662
Merged-chr12-86897380-4	chr12	86897292	86897492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12578.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	7.28973150025026	7.09401379991217	7.49058013189219	6.81207123407683	7.24702411060414	7.63143182663768	6.95413870952727	6.95806105721999	0.0568134088168141	0.816549023115628	0.929373690915054
Merged-chr7-80187050-4	chr7	80186883	80187083	+	874.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013659, exon 1 of 15)	5' UTR (NM_013659, exon 1 of 15)	142.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	4.13929457791935	3.97018726071013	4.22799377451519	3.8559995828367	3.92102359491794	4.35522720341505	3.9272920302537	4.30748437841319	0.241064164711423	0.58064459881263	0.815857355183469
Merged-chr15-98867512-4	chr15	98867416	98867616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033276, intron 1 of 54)	intron (NM_001033276, intron 1 of 54)	3689.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	6.5114839661074	6.67926407043535	6.1644485684363	6.48809150609643	6.16395349205343	6.57099948749782	6.41390966645254	6.11717004057864	-0.230868809077841	0.338202903495016	0.647818742407743
Merged-chr4-19537544-4	chr4	19537461	19537661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027769, intron 7 of 15)	intron (NM_027769, intron 7 of 15)	32547.0	NM_027769	70568.0	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	5.61957116798511	5.17926668036358	5.36895068492438	5.897660178718	5.6930557571417	5.3832372913849	5.71202484253364	5.3957469128486	-0.00562943486976968	0.985648570421463	0.994721627180638
Merged-chr5-139017912-4	chr5	139017805	139018005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001253890, exon 11 of 11)	3' UTR (NM_001253890, exon 11 of 11)	-22952.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	7.49036152433421	7.29500883810735	6.92382231786256	7.02783793051923	7.44375253079433	7.43296129689816	7.37159775312584	7.32429189507838	0.268101107166528	0.181604555287335	0.47824687501256
Merged-chr10-42760431-4	chr10	42760321	42760521	+	989.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1075.0	NM_001359283	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	4.92175231983295	5.10627130959207	4.92257312514974	4.57058549979913	5.08455244318943	4.82985672661572	4.89882808320211	4.73255425260268	0.0433680795413644	0.900851204579803	0.963265130981544
Merged-chr16-58462095-4	chr16	58462004	58462204	+	775.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356484, intron 13 of 15)	B2_Mm2|SINE|B2	53569.0	NM_028523	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	3.67386113833311	3.39215517649538	3.62256160389525	3.54813385615574	3.82736665947649	3.62780573865038	3.70836642131858	3.51038209453003	0.377360103549096	0.432303046798037	0.722377468409878
Merged-chr4-40244951-2	chr4	40244851	40245051	+	917.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5126.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	3.52479795964964	3.29255268604487	3.30869058117089	3.14743651024449	3.95560495709469	3.2314200350103	3.04051373901305	3.18372149862882	0.321562951360109	0.604883910191815	0.828616820075694
Merged-chr18-7869044-4	chr18	7868886	7869086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146298)	promoter-TSS (NM_001146298)	154.0	NM_001282093	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	7.01469516534265	6.97796804814983	7.54264632721378	7.00085262441602	6.9682721207861	7.2661439591049	6.82006800729863	7.17590845106576	-0.115815655574507	0.606200942489793	0.829351704182035
Merged-chr11-87427479-2	chr11	87427379	87427579	+	810.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199293)	promoter-TSS (NM_001199293)	-112.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	3.24902277638247	3.17802342400806	3.46173275906539	2.95427907092674	2.67158731683324	3.10945898373777	3.29200433085975	3.50739946823359	-0.146971585696321	0.825165770983191	0.932959644393814
Merged-chr11-103987590-4	chr11	103987500	103987700	+	903.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20729.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	4.70542097082599	4.86053089674315	4.30424422210282	4.19462319791931	5.06108094219642	5.05613397321997	4.72130260112748	4.58242157156349	0.716142846221571	0.0677296585533594	0.277799318092058
Merged-chr7-143474927-4	chr7	143474801	143475001	+	913.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042760)	promoter-TSS (NM_001042760)	-215.0	NM_001042760	18400.0	Mm.271740	NM_008767	ENSMUSG00000000154	Slc22a18	AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A	solute carrier family 22 (organic cation transporter), member 18	protein-coding	4.42439562068941	4.4398363298618	4.71545305287292	4.63342146511171	4.06088552162962	4.11765475293695	3.97715417327013	4.33792898214539	-1.06146059193322	0.00787350523597818	0.0664644484335496
Merged-chr9-41212816-4	chr9	41212688	41212888	+	817.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040392, intron 2 of 4)	intron (NR_040392, intron 2 of 4)	6633.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	3.57388107437432	3.50489080988757	3.57433909502379	3.38625203746585	4.05999554290929	4.2494465683094	4.01959432223252	3.99184242552482	1.71013683244112	0.000125194411012166	0.00245015054047814
Merged-chr10-13438610-4	chr10	13438507	13438707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	35789.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	4.99275408240616	5.04288577156262	5.16495064698211	5.82486624714933	5.08836497359327	4.70046304198552	5.20157136252586	5.28347402303565	-0.439345607082992	0.238799698882623	0.549192230129046
Merged-chr2-163764014-3	chr2	163763906	163764106	+	835.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13767.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	3.89155794996532	4.07532628882344	3.79756758462335	4.51030674515233	3.11088026744363	3.30522660335343	3.10025630999859	3.33077486991965	-3.33722791945656	2.51845445191835e-07	9.92586209485584e-06
Merged-chr4-123952236-4	chr4	123952113	123952313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34780.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	6.08643197400409	6.10908671887136	5.82638565637924	5.78938719731632	5.90661345140979	5.95317401089999	5.95464262965935	5.6126469823662	-0.138286142277004	0.590403874133129	0.820919766532264
Merged-chr5-64718307-4	chr5	64718223	64718423	+	864.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-85200.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	4.70455047632559	4.17632610466152	4.1609574562979	4.72167569282002	4.29209016236814	4.43704174285581	4.46175851436169	4.51948554856149	-0.128876895977164	0.751673093838806	0.902264711867851
Merged-chr1-33908027-4	chr1	33907932	33908132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276764)	promoter-TSS (NM_001276764)	-193.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	6.53474761992141	6.26966856093102	6.16136707014174	6.51087326631562	6.22685259812529	6.3380445254782	6.42329280371132	6.09315514057554	-0.169671929043526	0.465809093433616	0.746230290057781
Merged-chr11-115297606-4	chr11	115297498	115297698	+	952.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178035)	promoter-TSS (NM_178035)	-52.0	NM_178035	328035.0	Mm.21995	NM_178035	ENSMUSG00000044788	Fads6	BC044804	fatty acid desaturase domain family, member 6	protein-coding	4.7123347923955	4.37155358797261	4.4907237560309	4.37713679856962	4.41204423474515	4.34828445585187	4.38716499666936	4.4878351103677	-0.171569995071688	0.644830122487886	0.850540242207308
Merged-chr1-67363892-4	chr1	67363777	67363977	+	902.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	240850.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	4.65509095277195	4.88735057081057	4.45953127853769	4.95555343383123	3.87251787018937	4.13586607495067	4.25904574298255	4.49835374366047	-1.31347428847911	0.00159102209287037	0.0195767652771668
Merged-chr11-106669911-4	chr11	106669806	106670006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 13 of 14)	intron (NM_001305158, intron 13 of 14)	45375.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	6.83387964354299	7.29233296641276	6.83508662250108	6.16159684724018	6.43481761550233	6.43350915278537	6.39339170925233	5.9000011581179	-0.761918444681917	0.0103439205488634	0.0809029910082074
Merged-chr3-138143448-4	chr3	138143345	138143545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348196)	promoter-TSS (NM_001348196)	-3.0	NM_175389	108943.0	Mm.471692	NM_175389	ENSMUSG00000004127	Trmt10a	3110023L08Rik|AA794508|Rg9mtd2|Rnmtd2	tRNA methyltransferase 10A	protein-coding	7.13008509635198	7.06299995282491	6.65075045142082	6.97204528373241	7.38567494449146	7.38806725352173	7.45872914467285	7.58363597778298	0.659526097277279	0.000684850495773389	0.00994836192625594
Merged-chr1-55506596-4	chr1	55506506	55506706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	MIR|SINE|MIR	100660.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	7.10279226816823	7.52839330828566	7.17465862923249	7.35455401566676	7.44434833670992	7.11288388630832	7.36810646387796	7.12300456402538	-0.039956796998528	0.842166668250749	0.940110307562683
Merged-chr7-34380503-4	chr7	34380394	34380594	+	927.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025948, intron 1 of 10)	intron (NM_025948, intron 1 of 10)	9211.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	4.66012370972538	4.54327249360135	5.04345663936655	5.2786317217542	5.08834266913945	4.75146837179095	4.98545101824377	5.52648344086221	0.362480819599253	0.349810008685757	0.657298556221946
Merged-chr8-115479474-1	chr8	115479374	115479574	+	540.0	f1_balb.idr	Intergenic	Intergenic	227420.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	2.83057467235356	2.67864282098604	2.99589923554231	2.75090869421465	2.65521024831812	2.74679943386996	2.69864446793781	2.41989293885791	-0.892903831662113	0.193633508558729	0.493801955975881
Merged-chr7-25712025-4	chr7	25711967	25712167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028771, exon 5 of 5)	3' UTR (NM_028771, exon 5 of 5)	6986.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	7.09895677546852	6.45922228650505	7.31851512952408	6.74478664102998	6.74161359638624	6.80914270241527	6.08214896117274	6.38466846433667	-0.569691743760161	0.041390427437391	0.206008617199221
Merged-chr1-151041180-4	chr1	151041075	151041275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47740.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	7.02372422068234	6.8496799447296	7.14086528724839	7.25745676250802	6.65831931184057	6.85525530709846	7.25050463859718	6.60687482984674	-0.302576741396138	0.18886042532139	0.487687851483034
Merged-chr15-101372169-4	chr15	101372060	101372260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2035.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	5.90143240418006	6.38537352009427	5.70447100936823	5.85366273233216	6.31488698776914	5.58638676518437	5.80210404562758	5.80319305635328	-0.105991228690085	0.725985951601892	0.890989643736271
Merged-chr15-7942791-2	chr15	7942691	7942891	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081402, intron 10 of 17)	MusHAL1|LINE|L1	127241.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	3.14783890367296	3.18357725291292	3.45920534630632	2.89806566783273	3.2119265708321	2.92426289676101	3.13637466702019	3.0237810165589	-0.379997478269046	0.530253980554272	0.786409719587293
Merged-chr19-10914512-4	chr19	10914405	10914605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009580, intron 11 of 11)	intron (NM_009580, intron 11 of 11)	6096.0	NM_009580	22786.0	Mm.24767	NM_009580	ENSMUSG00000024734	Zp1	-	zona pellucida glycoprotein 1	protein-coding	6.02913673950825	6.68564934618599	6.13728550201867	5.92373713739618	6.25748591106042	6.20720705486085	6.27737507796693	6.04803088201716	-0.0342460068423109	0.899001514702192	0.962375626232471
Merged-chr6-125145168-4	chr6	125145053	125145253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302779)	promoter-TSS (NM_001302779)	-71.0	NR_126495	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	6.54097821254	6.61837684199247	6.30878217931269	6.16649810656584	7.05849547465326	6.59907079763446	6.79854599864292	6.50426452232466	0.517191111854342	0.0315260688848424	0.173084267517225
Merged-chr12-98268295-2	chr12	98268195	98268395	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008152)	promoter-TSS (NM_008152)	-340.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	4.6473697868917	4.37234705069211	4.64810873968401	4.84368035188921	5.15424314156773	4.94154893944637	5.13170409868738	4.64512002574746	0.684262721742032	0.0572218891805209	0.250707672656672
Merged-chr4-118999822-4	chr4	118999715	118999915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37848.0	NM_133892	100470.0	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	6.87027521573538	7.31323713750751	6.60137720466577	6.90459111616142	7.58605510149125	7.14563343609324	7.47163284741894	7.34801762292097	0.614332242812058	0.00592653051941157	0.0537861170268005
Merged-chr1-92749601-3	chr1	92749501	92749701	+	949.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82044.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	4.03125294426202	3.64725560123333	4.11920475900229	4.35388217832955	3.97850518411848	3.66052307744902	3.82138733665302	3.78099701101426	-0.69736250710361	0.149650141092012	0.432035602283179
Merged-chr2-71209554-4	chr2	71209440	71209640	+	904.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2166.0	NM_001198875	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	4.59688742256383	4.18866795015376	4.10295070681114	4.29016968164728	4.19558551724638	4.22824222683061	4.03513132017176	4.41161550121751	-0.201901629693251	0.621417423077745	0.837820031769723
Merged-chr2-116990326-4	chr2	116990249	116990449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90197.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	7.43299418393996	7.68392804912401	7.27136163973708	7.34094188347293	7.32432077200902	7.41561621967626	7.43492779208822	7.18781861369637	-0.130499140808123	0.491321160765347	0.762953445515293
Merged-chr16-17432775-2	chr16	17432675	17432875	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-19210.0	NM_001277231	12929.0	Mm.21048	NM_007764	ENSMUSG00000006134	Crkl	1110025F07Rik|AA589403|AI325100|Crkol	v-crk avian sarcoma virus CT10 oncogene homolog-like	protein-coding	3.4521528187379	3.49802369919595	3.34185847483434	3.21349893766867	3.646175766337	3.33230810135087	3.27113833029689	3.28108174006295	0.0993348611807975	0.85283471064516	0.944672349828292
Merged-chr11-80072491-3	chr11	80072399	80072599	+	786.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018776, intron 1 of 7)	intron (NM_018776, intron 1 of 7)	8492.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	4.1426123698651	4.26902932766462	3.56587095221569	3.87454197199666	4.15506714026005	3.87002630388691	3.79123263471139	4.00704921889768	-0.0508936681953411	0.91503732404032	0.968396474535973
Merged-chr7-24374096-4	chr7	24373985	24374185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163510, intron 1 of 8)	intron (NM_001163510, intron 1 of 8)	3822.0	NM_008433	16534.0	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	6.73199943539673	6.45681051532369	6.77620748771729	6.65724009531456	6.8552289430005	6.80335609414157	6.71335939224961	6.90490328312785	0.23470084486789	0.246305818614881	0.557591815507556
Merged-chr9-55272166-4	chr9	55272083	55272283	+	961.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	MTD|LTR|ERVL-MaLR	11442.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	4.96404124655582	4.91584728765094	5.15317495025714	4.89890453049829	4.73788720816341	5.10306545694663	4.59611455251876	4.81847756807481	-0.321065471081376	0.338224110069754	0.647824496277247
Merged-chr11-95259279-4	chr11	95259191	95259391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2238.0	NM_053093	93670.0	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	6.22598420270773	6.32488190137642	6.18745177247434	6.25243313303422	6.19579523155938	6.56621995957609	6.15583109848446	6.31651076938791	0.0913934099288326	0.688519604928453	0.872815821435521
Merged-chr9-53405285-4	chr9	53405199	53405399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029247)	promoter-TSS (NM_029247)	13.0	NM_029247	75311.0	Mm.26078	NM_029247	ENSMUSG00000005131	4930550C14Rik	AU017961	RIKEN cDNA 4930550C14 gene	protein-coding	6.36176015455832	6.19252572296337	5.73472488377355	6.28940138388854	6.85926889189438	6.74212034440998	6.65132213604482	6.78960527046847	0.860205855001639	0.000241457848001125	0.00424258903057816
Merged-chr17-8276857-3	chr17	8276753	8276953	+	783.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6960.0	NM_018819	55951.0	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	3.53344278002229	3.77982778165923	3.4185780013209	3.94966481434088	3.35967038681511	3.40500586397787	3.72126643161711	3.35532124467886	-0.752560138932856	0.158363962941553	0.445206703195893
Merged-chr7-24467105-3	chr7	24467016	24467216	+	844.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011113, intron 3 of 6)	ZP3AR|Satellite|Satellite	4633.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	3.30479207639611	3.1766808026906	3.08188390894069	3.33833424933817	2.82950270033094	3.06228954591001	3.23968320188707	2.88382774278543	-0.91723797426473	0.128027433857921	0.398202521938953
Merged-chr13-76396116-4	chr13	76396010	76396210	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	11149.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	5.12481085079224	4.83080208972489	5.59799056588339	5.51825629240923	5.00936079224898	5.08512135869014	5.25759092234266	5.30960409130668	-0.266219467587725	0.430294240393391	0.720911233069582
Merged-chr11-115814105-4	chr11	115813998	115814198	+	973.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080643)	promoter-TSS (NM_080643)	-506.0	NM_080643	140721.0	Mm.383737	NM_080643	ENSMUSG00000034471	Caskin2	1600028L06Rik|mKIAA1139	CASK-interacting protein 2	protein-coding	5.06687455935486	5.2895883057908	4.68691004690642	4.7612864398369	5.3781812719783	4.99083353457077	4.86803416885981	5.21899529969703	0.327110233892485	0.346855371010615	0.654983043837928
Merged-chr12-5206583-2	chr12	5206483	5206683	+	929.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 3 of 13)	intron (NM_001164493, intron 3 of 13)	169099.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	2.74129664945557	2.5415307388039	3.04335565861881	2.85879976125822	2.81970925858563	2.91522182655673	2.9197737798891	2.9294138649364	0.381935811580637	0.551254662142951	0.798837168776829
Merged-chr6-135007834-4	chr6	135007743	135007943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3769.0	NM_026360	67755.0	Mm.166524	NM_026360	ENSMUSG00000030204	Ddx47	4930588A18Rik|C77285	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding	6.80371510243363	6.62662641756021	7.18212542797491	7.36816673309555	5.9995199305065	6.09540942274979	6.21003350337094	6.21674498018975	-1.32555274731759	1.35350891704642e-07	5.64059784581071e-06
Merged-chr1-156028551-4	chr1	156028457	156028657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144791, intron 4 of 6)	intron (NM_144791, intron 4 of 6)	6260.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	6.79272494114552	7.0217182031111	6.87731520815001	6.92296063486849	6.72557379018277	6.98483798104347	6.89491637649583	6.88581312994983	-0.0571208444907869	0.770257795816328	0.910083821330452
Merged-chr10-75227205-3	chr10	75227118	75227318	+	781.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145826, intron 2 of 18)	MIR|SINE|MIR	14828.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	3.28523228404215	3.63582892973668	3.34700533056256	3.62418385639326	3.42049633325157	3.39725945519164	3.50149773826807	3.51356105011125	-0.120487182900726	0.81511799305492	0.928710624683246
Merged-chr4-135945907-4	chr4	135945795	135945995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008254)	promoter-TSS (NM_008254)	-553.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	7.07583413701339	6.89237043830889	6.85125417161875	7.19369143905644	6.82452073260051	6.88288733993279	6.74611610999012	6.66969114804348	-0.332668376220461	0.10106834767834	0.348923061133733
Merged-chr19-16009419-3	chr19	16009315	16009515	+	756.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045355, intron 2 of 2)	MTD|LTR|ERVL-MaLR	24340.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	3.43693883680213	3.41737388442757	3.64832660141679	3.54252342437565	3.50722983556359	3.5512782958868	3.42472923400525	3.54536844913206	-0.0261720577101341	0.957389029152077	0.984815156534365
Merged-chr8-117305583-4	chr8	117305491	117305691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-43579.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	5.41695296809502	5.70372745334668	5.47638870115941	5.57210990248301	5.67451655211038	5.59326298595553	5.6584758142405	5.47258585115478	0.091363005045402	0.73158556441358	0.893711507171347
Merged-chr2-160010746-5	chr2	160010623	160010823	+	807.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-5930.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	3.55898851783902	3.18066095238918	3.40741290639894	3.36438739438309	3.15626088300879	3.1474594155976	3.02768609723063	3.6926211517779	-0.355838186915246	0.543490269835061	0.79461617608639
Merged-chr10-41518701-4	chr10	41518621	41518821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016898)	promoter-TSS (NM_016898)	-779.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	5.87079471743535	5.75915786491273	6.12432416615466	5.8757488067701	5.66202243446235	6.06985660034474	5.79475566291478	6.04135619899804	-0.0268831471229508	0.917360094961424	0.969528488904946
Merged-chr7-43282843-4	chr7	43282685	43282885	+	772.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30515.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	3.29440664663569	3.12840916794888	3.17197933903702	3.15116301061603	3.43258929419679	3.62740512147786	3.49513721450621	3.23321424707735	0.960158162491167	0.0668652657855673	0.2757795082484
Merged-chr8-46934388-4	chr8	46934284	46934484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52503.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	6.26842183434451	6.13350664953038	6.00822480686217	6.03448538984901	6.09422928662315	6.3502294373242	6.06341847410713	6.13120829006681	0.0782323142361194	0.737316591976758	0.896374281276027
Merged-chr8-123343623-4	chr8	123343495	123343695	+	954.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172287, intron 1 of 14)	intron (NM_172287, intron 1 of 14)	10882.0	NM_172287	234857.0	Mm.150200	NM_172287	ENSMUSG00000010154	Spire2	BC026502|Spir-2|Spir2	spire type actin nucleation factor 2	protein-coding	4.75012535591977	5.31233520406934	4.5837569284114	4.82358814828283	4.53854536528422	4.96378296298832	4.84007151452591	4.89555100898285	-0.180296246905585	0.62529884858713	0.839823890853885
Merged-chr1-143956369-3	chr1	143956283	143956483	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47766.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	3.29528728231402	3.42716217392642	3.81073358631296	3.7651266648957	3.66609781626509	3.77874840087526	3.69712162654716	3.89935619505826	0.481436432900448	0.340599610979219	0.649688226489213
Merged-chr13-39003591-4	chr13	39003487	39003687	+	872.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42712.0	NM_001170431	108652.0	Mm.255506	NM_134060	ENSMUSG00000021432	Slc35b3	4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2	solute carrier family 35, member B3	protein-coding	5.00939337196732	4.83876992299354	4.32066841953307	4.99497769139303	5.04444242544913	4.60406173130366	4.98554260437674	4.60462475707228	0.0134910521956131	0.971769139734064	0.989737326894157
Merged-chr9-44461448-4	chr9	44461384	44461584	+	881.7589109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-6717.0	NM_009476	22269.0	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	3.78200343632594	3.37640623147678	3.93083447095186	3.3540786624737	3.728406114207	4.05579182169509	3.65874028946086	4.25510183346391	0.924990408486476	0.0733715787361644	0.291717222358011
Merged-chr5-43355377-4	chr5	43355264	43355464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120010.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	7.48607798158308	7.43276510237928	7.76043032162128	7.79687220788642	7.94211109547211	8.05124335565198	8.11829307741785	7.69851579070495	0.424503305586027	0.0246024382690757	0.146824595753714
Merged-chr4-11085018-5	chr4	11084953	11085153	+	788.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8848.0	NM_001085493	76947.0	Mm.275265	NM_001085493	ENSMUSG00000050323	Ndufaf6	2310030N02Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	protein-coding	3.41854138097018	3.13905154410098	3.74930347050598	3.34667011917863	3.20117857069761	3.29613959694426	3.03889573887642	3.46979061742458	-0.600413604661801	0.296343446627508	0.608423380758007
Merged-chr3-88745606-2	chr3	88745507	88745707	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018804, exon 4 of 4)	3' UTR (NM_018804, exon 4 of 4)	26992.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	3.18515452482744	3.07843647823379	2.98344935867944	3.00288449124129	3.36306131309891	3.42131887449648	3.17394624496244	3.81370657790592	1.4629767536404	0.00901928104337324	0.0732523283188343
Merged-chr2-27028789-4	chr2	27028684	27028884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172659)	promoter-TSS (NM_172659)	-786.0	NM_001177627	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	6.94099595766092	7.38921138498951	7.20236644849284	6.96046559062204	7.18552382317395	6.77528328618008	6.89391609225509	6.7985566408021	-0.273796720714866	0.210017330960497	0.514484230514723
Merged-chr11-118236724-4	chr11	118236612	118236812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	11880.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	6.43129399124774	6.76339193499049	7.06111823360885	6.9055454282299	6.77797937070982	6.55363458524021	7.18642448046869	7.02117526941669	0.128994322861518	0.590386257443863	0.820919766532264
Merged-chr7-49007097-4	chr7	49006983	49007183	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	48010.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	5.73221873029337	5.03677807781434	6.06782261257151	5.95052156890944	5.53451813965447	5.2766159428722	5.60486922444387	5.75287005404803	-0.338963281121177	0.308545720075859	0.620845739286685
Merged-chr11-118424866-3	chr11	118424771	118424971	+	876.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3586.0	NM_001204129	56745.0	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	3.69227092134707	3.6614247107412	4.00127421826981	4.00980698601643	3.73965409122755	4.02899924475993	3.55915074717099	4.31906044052323	0.233045759755957	0.639605912374178	0.847607151813091
Merged-chr7-58658168-4	chr7	58658077	58658277	+	946.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009728)	promoter-TSS (NM_009728)	-25.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	4.05045640534277	3.59682651446528	3.89531064141728	4.12633448756881	4.35633714975485	4.07290629348147	4.21390512301047	4.46215304249818	0.87159612506722	0.0504370322646228	0.232999579410928
Merged-chr1-156718601-4	chr1	156718521	156718721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145413, intron 1 of 7)	CpG	289.0	NM_145413	215015.0	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	5.24215875025312	5.1858116678106	5.21225581974713	4.85904162850848	5.30999594593015	5.41600551121397	5.12312948536228	5.20866012608399	0.288444036832787	0.347260298127856	0.65539695498867
Merged-chr3-107110420-4	chr3	107110333	107110533	+	980.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008417, exon 3 of 3)	3' UTR (NM_008417, exon 3 of 3)	8866.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	4.73017777266094	4.92691192397081	4.9290367607265	4.93552205427969	5.51361692761601	4.86766150542375	5.33367801417946	5.03136666386332	0.644033924050485	0.0522100006666079	0.237946961035247
Merged-chr12-17591433-1	chr12	17591333	17591533	+	820.0	f0_c57.idr	Intergenic	MYSERV-int|LTR|ERVK	46560.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	2.42582476472069	2.51792312546445	2.42603332091646	2.05381216654905	2.72607612954965	3.07463903677449	3.40841244033815	3.5898150157391	5.33369351459561	0.000134269768780857	0.0026013031769332
Merged-chr15-53130920-4	chr15	53130814	53131014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	215269.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	6.59869134370636	6.48190050117855	6.86823578355342	6.97630122303298	6.84665479879279	6.30785405671526	6.58170650288343	6.1685214723729	-0.343199976071034	0.177611152444837	0.473095366416733
Merged-chr13-110598587-4	chr13	110598434	110598634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	203490.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	5.00481571209248	5.25194477295584	5.35440415262536	5.2289829000966	5.08223066044475	5.34956991955359	4.94508966861124	5.26476115776877	-0.0999339790295702	0.743461821709451	0.89894073126818
Merged-chr17-25797155-4	chr17	25797053	25797253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133719)	promoter-TSS (NM_133719)	-108.0	NM_133719	70083.0	Mm.41925	NM_133719	ENSMUSG00000002274	Metrn	1810034B16Rik|EyeLinc16|Hyrac	meteorin, glial cell differentiation regulator	protein-coding	6.04652378749067	5.88456606122788	5.68525121224138	5.71332034028234	5.89174035921257	5.8867901588204	5.54785356067327	5.78197483229008	-0.0715357336129038	0.78466272473191	0.916199279588134
Merged-chr5-102571636-4	chr5	102571560	102571760	+	770.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029270, intron 2 of 9)	intron (NM_029270, intron 2 of 9)	90269.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	3.52276187390201	3.34804301022163	3.58040264218811	3.80716830680219	3.28998961867269	3.64074509548805	3.86102923698096	4.00237706830981	0.422254792415517	0.434666628477901	0.723891809743297
Merged-chr2-124858764-4	chr2	124858656	124858856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	205175.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	6.0843131436127	6.29401571862929	6.47221154162051	6.24202321858902	6.13290509973731	6.51337375911836	5.79356951544006	6.27996703129338	-0.118136555894851	0.64316641539462	0.849459897971419
Merged-chr15-58325596-4	chr15	58325517	58325717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1448.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	5.59669038144023	5.26557741652383	5.17447846188641	5.16071903555497	5.42809328604061	5.31680831919254	5.21403750035808	5.38595988516901	0.0783078353532616	0.79109098745268	0.918941598601318
Merged-chr2-154613941-1	chr2	154613841	154614041	+	1000.0	f1_balb.idr	intron (NM_199304, intron 1 of 14)	CpG	573.0	NM_199304	228807.0	Mm.103555	NM_199304	ENSMUSG00000059842	Zfp341	Znf341	zinc finger protein 341	protein-coding	4.67160578098356	4.68325583120228	4.51420668594413	4.2542730026172	4.51150807997804	4.25328195280062	4.65008362620695	4.93575820958372	0.177285601581586	0.651636279777359	0.85410966630797
Merged-chr1-136559953-4	chr1	136559853	136560053	+	815.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64948.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	3.74797341444092	4.08373118998655	4.2210520051736	3.80725360425024	4.68101096672354	4.15676107319999	4.15755930856292	4.30349744585773	0.966216524135835	0.0270248606551104	0.156414593267832
Merged-chr12-8493527-4	chr12	8493402	8493602	+	931.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6507.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	4.84339283294675	5.00476126091712	4.80687352203033	5.40549560322239	4.70516170767977	4.69058965972269	4.66644391668692	4.84096927193394	-0.679240149375006	0.0561315403230472	0.247975850835041
Merged-chr9-65075335-4	chr9	65075233	65075433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028906, intron 17 of 20)	intron (NM_028906, intron 17 of 20)	-26153.0	NM_020043	56741.0	Mm.209041	NM_020043	ENSMUSG00000032816	Igdcc4	DDM36|Nope	immunoglobulin superfamily, DCC subclass, member 4	protein-coding	5.77968286300346	5.98300317742197	6.05593727356127	6.1812096552918	6.38598256489679	5.64423987940245	5.72573443645442	6.07202813120015	-0.0136016559252456	0.961913337031577	0.986315212431511
Merged-chr3-152556642-3	chr3	152556543	152556743	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355635, intron 6 of 8)	intron (NM_001355635, intron 6 of 8)	-110270.0	NR_040386	99542.0	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA	3.86294928252125	3.57920261202437	4.20999470494886	4.06027287667994	3.77689980941262	3.76220785487934	4.03230591964924	3.8100187157699	-0.293441796937346	0.53531083554285	0.789648104016425
Merged-chr10-128909271-3	chr10	128909177	128909377	+	908.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282966)	promoter-TSS (NM_001282966)	-68.0	NM_001282966	12512.0	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	4.72390328521299	4.62652535153817	4.54616327738872	4.77056653106793	4.34650057158683	4.21701047116878	3.83970147960787	4.19265884380987	-1.19134348765236	0.00328312035253557	0.03424519688938
Merged-chr5-3432758-4	chr5	3432655	3432855	+	969.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	88862.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	4.98945422569396	5.19385935365073	4.88140237123743	4.55832496287393	5.2827020926372	4.89953492497997	5.21562175172201	5.08711853332314	0.436606582899475	0.201627924616579	0.50415510516587
Merged-chr4-12906848-4	chr4	12906758	12906958	+	982.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173746)	promoter-TSS (NM_173746)	21.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	5.60872877205041	5.24490294608557	5.84598366136811	6.02941690908252	5.28185852609571	5.2120445036339	5.97622624370808	5.31535877171635	-0.403858310535774	0.236158620681297	0.546171961577608
Merged-chr7-138840884-4	chr7	138840795	138840995	+	781.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045483, intron 1 of 1)	intron (NM_001045483, intron 1 of 1)	5372.0	NM_001045483	69546.0	Mm.31598	NM_027115	ENSMUSG00000041775	Mapk1ip1	2310009E07Rik|AU043776|MISS	mitogen-activated protein kinase 1 interacting protein 1	protein-coding	3.80329329453744	3.92825289859485	3.95928726202038	3.81098675761436	3.9493496017179	3.92453956348369	4.31531015868258	3.95693517733176	0.47223446955498	0.27411814327115	0.585845782661322
Merged-chr2-168005883-3	chr2	168005768	168005968	+	797.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 2 of 21)	intron (NM_001080708, intron 2 of 21)	4725.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	3.4511216323919	3.37570482128012	3.74855821086095	3.94346276577917	3.17628091251426	3.38595666538826	3.26169754926561	3.27115636759635	-1.37136573127364	0.013781658865238	0.0988975397085162
Merged-chr2-50854027-4	chr2	50853928	50854128	+	884.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55656.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	4.78866529373383	4.27966306205071	4.98928241880478	4.92771010409651	4.54000686645606	5.0637389063762	4.61467118776027	4.41243105104133	-0.212501693705472	0.59406010302088	0.823266307249001
Merged-chr7-101050944-4	chr7	101050850	101051050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38897.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	7.23863042425097	7.32834123581329	7.2811576292626	7.06535745572678	6.89725761820266	7.06877096591578	6.54501948217952	7.1812523223428	-0.390855025361241	0.0677152679456394	0.277799318092058
Merged-chr10-126330729-3	chr10	126330619	126330819	+	837.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	364500.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	4.01794027330964	3.91390992880686	3.78505608140329	4.70533224171388	3.14066351290388	3.34257124018209	3.2134460222135	3.434699097011	-3.06623896826797	9.59394683983293e-07	3.37895864479203e-05
Merged-chr17-79786861-4	chr17	79786775	79786975	+	992.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-71834.0	NM_009994	13078.0	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	4.54925492370784	4.94726078847923	4.91251472748711	4.90240270066837	4.67993923438655	4.17305587724794	4.64797898567059	4.16024575475249	-0.846268310135201	0.032883747620336	0.177954251643572
Merged-chr12-4080498-3	chr12	4080411	4080611	+	864.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2063.0	NM_153082	217378.0	Mm.271656	NM_153082	ENSMUSG00000020657	Dnajc27	AI639580|C330021A05Rik|Rabj|Rbj	DnaJ heat shock protein family (Hsp40) member C27	protein-coding	3.69264570858911	3.5858251054618	3.24654976800205	3.38963197474046	3.61067354085401	3.48719040850784	3.41970806636006	3.59313063951125	0.158672377603173	0.75494616511379	0.903523774777845
Merged-chr7-145124462-3	chr7	145124362	145124562	+	752.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	83657.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	3.77233023662857	3.29798743822175	3.62934318243985	3.80998823041702	3.64211942372879	3.39483633261509	3.45458669343183	3.40692090811437	-0.528886922302058	0.313454540994804	0.625371549554872
Merged-chr11-20215456-3	chr11	20215354	20215554	+	811.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	intron (NM_008996, intron 1 of 5)	14042.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	3.71750572123554	3.81986833988209	3.71803787401512	3.64316829992184	3.4629128737438	3.78417703171439	3.54227184435338	3.71588566985763	-0.302266244692394	0.524672108911046	0.783071329178099
Merged-chr13-45391721-4	chr13	45391644	45391844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153789, intron 2 of 6)	intron (NM_153789, intron 2 of 6)	2002.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	6.84052655761256	7.10518929431054	6.97602571187901	7.04650480133816	6.9555178706967	6.86922277315016	7.24347830888057	6.97110072529715	0.0223665534067049	0.910066851940298	0.966671146059764
Merged-chr3-88513726-8	chr3	88513603	88513803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10351.0	NM_001002011	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	5.04816741576326	4.87346674945218	4.85066745266026	4.58339538218424	4.73753070545792	4.8335254562306	4.89645288577882	4.69569950231869	-0.085874193069255	0.80233868437663	0.923835536821705
Merged-chr12-100005483-4	chr12	100005387	100005587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	40988.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	6.84403377044042	6.52265030867276	6.88316850958414	6.7735448657815	6.49303075187831	6.27437821812802	6.35210839524003	6.43458560157044	-0.527581851059893	0.0144888913351138	0.102342442824458
Merged-chr6-83317605-4	chr6	83317460	83317660	+	983.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008638)	promoter-TSS (NM_008638)	44.0	NM_008638	17768.0	Mm.443	NM_008638	ENSMUSG00000005667	Mthfd2	AW558851|NMDMC	methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	protein-coding	5.14446013189833	5.60166234844245	4.91987977655945	5.09898258203821	5.43333565458523	5.65023380546069	5.42341357173008	5.36293290455777	0.451561491176504	0.146720814082026	0.427220370158867
Merged-chr9-31211883-4	chr9	31211792	31211992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102456)	promoter-TSS (NM_001102456)	-44.0	NM_001102456	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	8.49245678705014	8.61150847119274	8.50371172103608	8.63354669693579	8.56182010343803	8.57323530933572	8.65993282724108	8.42208839457872	-0.010422456374707	0.944168260948461	0.979954897588816
Merged-chr12-113000806-4	chr12	113000697	113000897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028193)	promoter-TSS (NM_028193)	-176.0	NM_028193	72308.0	Mm.196721	NM_028193	ENSMUSG00000011158	Brf1	2510002F24Rik|GTF3B|TAF3C|TAFIII90|TFIIIB90|mTFIIIB90	BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit	protein-coding	8.46197507555212	8.59207350512764	8.12767070646987	8.22239886602091	8.42880321538728	8.50970290259367	8.65930009614843	8.30975345990431	0.151569906744269	0.392670226604682	0.692068391509301
Merged-chr10-95919032-3	chr10	95918893	95919093	+	764.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21670.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	3.57811068801452	3.30037270919687	3.42235458264575	3.94505778037271	3.32252553151633	3.07254357543717	3.23368558818782	3.42049838172293	-1.14046287368244	0.0496660282868801	0.230755758970747
Merged-chr15-103163392-4	chr15	103163278	103163478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027885)	promoter-TSS (NM_027885)	-94.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	6.87760795858731	7.0793562923747	6.68860160840426	7.00686084977297	6.88610579770021	7.08220474855104	6.92258413108272	6.96552545958154	0.0439766370515751	0.825532631485153	0.933108872014231
Merged-chr5-135149501-4	chr5	135149406	135149606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013763)	promoter-TSS (NM_013763)	-205.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	9.26462771321939	9.4862969240511	9.24512534661912	9.18740057156207	9.10118011820095	9.38656870361329	9.45700592814852	9.00511910181601	-0.0621028449073139	0.710194459048126	0.884017407313562
Merged-chr2-73536508-3	chr2	73536387	73536587	+	901.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa-int|LTR|ERVL-MaLR	-7000.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	3.05546483278084	3.19530839705343	3.32920036844237	3.49600956911633	2.8459681551882	2.81531041354016	2.98351977899877	2.9266362416092	-1.71352851085585	0.00663795738923966	0.0584973590452755
Merged-chr11-75732814-4	chr11	75732726	75732926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009536)	promoter-TSS (NM_009536)	-61.0	NM_009536	22627.0	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	7.38588467649523	7.32002304223202	6.92981910650091	7.30298660914044	7.41609313738962	7.2255109784865	6.96166432148992	7.13983426345924	-0.0639509134724196	0.75651252295748	0.904365847712391
Merged-chr9-108336301-3	chr9	108336194	108336394	+	857.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016802, intron 5 of 5)	B1_Mus2|SINE|Alu	-2786.0	NM_001329528	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	3.79843872493998	3.46752057779256	3.79902827814507	3.3859836677101	3.5846126855792	3.34802436850076	3.58694388823257	3.70188518751777	-0.16402922919787	0.749079630671947	0.901187172003694
Merged-chr10-88332554-4	chr10	88332443	88332643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 4 of 6)	intron (NM_027878, intron 4 of 6)	24532.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	6.27045102108073	6.12596492730073	6.19337010815546	5.94322181529023	6.56067713651639	6.44753418202912	6.6529369360466	6.16862507575419	0.525643879184051	0.0258445525497908	0.151854341212047
Merged-chr4-32570157-4	chr4	32570045	32570245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_026843, intron 1 of 4)	intron (NR_026843, intron 1 of 4)	1517.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	7.82700941152467	7.89783894260822	8.20983261861965	8.1754533345315	7.80634831968396	7.44347820432247	8.14816232638663	8.00850326487058	-0.209614571222771	0.309314036850474	0.621622697166796
Merged-chr4-128661337-4	chr4	128661240	128661440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	6638.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	5.8279822687964	5.94792007398242	6.03304298332896	6.24208043149186	5.88768416136972	6.07630176545548	6.10214083449572	5.66817061356085	-0.150424428781057	0.561414808459502	0.80494560024742
Merged-chr2-173356242-3	chr2	173356125	173356325	+	930.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-79692.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	3.38438400761068	3.06521736389941	3.17301027695672	3.35933180095322	3.34157482067244	3.02599222957297	2.91112720910364	2.98604409549312	-0.650620119394174	0.282866813222563	0.595041976860567
Merged-chr12-73901296-4	chr12	73901186	73901386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313920)	promoter-TSS (NM_001313920)	-38.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	6.50672578751184	6.45738120531131	6.37503518538911	6.32073112650989	6.29143925828251	6.27861544567707	6.25191807407911	6.16123865226459	-0.242035811545151	0.266311307472116	0.578066256744946
Merged-chr12-75511720-4	chr12	75511639	75511839	+	910.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012024, intron 3 of 13)	intron (NM_012024, intron 3 of 13)	84461.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	4.45248201277711	4.01566001732038	4.5730069763789	4.69679178435274	4.61040267800296	4.44941379498771	4.34723708213454	4.49150306795034	0.026864519624524	0.946853727661164	0.981006120452308
Merged-chr6-38805822-3	chr6	38805711	38805911	+	943.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	31500.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	4.43271916226401	4.20524331679254	4.83223987629709	5.1490771678355	4.01213322030393	4.16665979729886	4.18297263672778	4.38731336446709	-1.23379596505178	0.00555123897182581	0.0513123315915095
Merged-chr17-57011426-4	chr17	57011312	57011512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133801)	promoter-TSS (NM_133801)	-124.0	NM_133801	98053.0	Mm.24632	NM_133801	ENSMUSG00000002658	Gtf2f1	2810405L04Rik|C76800|RAP74	general transcription factor IIF, polypeptide 1	protein-coding	7.87681567095728	8.17482671966568	7.94380846902695	7.80293564246148	8.12075345040413	8.34838858702749	7.79449832753643	8.11697380833216	0.198805196479941	0.28882514270632	0.600803227327521
Merged-chr6-118137319-4	chr6	118137226	118137426	+	812.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030165, intron 1 of 7)	intron (NM_030165, intron 1 of 7)	1504.0	NM_001362149	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	4.05666398968706	4.44389287666577	3.78961090952899	4.25194634553498	4.17766041804855	4.07898371793128	3.99136020193065	4.05485886751878	-0.221446901957236	0.613345624644001	0.833250529002088
Merged-chr3-148960436-2	chr3	148960336	148960536	+	921.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5801.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	2.83921253707132	2.68130585751766	2.94836805055507	2.47720191138994	2.60656697755004	2.62417577605447	2.51209987066696	2.58856680306782	-0.79940467307957	0.251208921272941	0.562572357390091
Merged-chr15-12233261-4	chr15	12233143	12233343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 3 of 15)	intron (NM_001356498, intron 3 of 15)	28215.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	5.99997530182622	6.49161077943476	6.88946321410489	7.03751768769695	6.30196496714858	6.36383057314986	6.75280896737066	6.2634517758679	-0.350161426316102	0.223748158729699	0.531847393228294
Merged-chr2-125123188-4	chr2	125123114	125123314	+	970.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162418, intron 1 of 14)	CpG	446.0	NM_001162417	17876.0	Mm.18535	NM_010852	ENSMUSG00000027201	Myef2	9430071B01|mKIAA1341	myelin basic protein expression factor 2, repressor	protein-coding	4.47556092518782	4.65327678409371	4.64929267393943	4.44110079822335	4.88625542581273	4.78338380606479	4.94528662834233	4.96641938408244	0.735004968469604	0.0274381090629203	0.157934430291898
Merged-chr9-100434473-1	chr9	100434373	100434573	+	695.0	f0_balb.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	52000.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	3.6211342061881	3.00473716629463	3.53458940413759	2.89990996847049	3.26425092926278	3.01810743694275	2.89809412497264	2.97624785184489	-0.951921997274551	0.148987430256808	0.430948321612862
Merged-chr1-131638895-4	chr1	131638801	131639001	+	858.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007799, intron 1 of 9)	Zaphod2|DNA|hAT-Tip100	587.0	NM_007799	13034.0	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding	3.90284966114608	3.93173999240275	4.05118153968821	4.25385997073494	3.80303699463095	4.17392429743364	3.88785017042617	4.18077149244573	-0.111911834953381	0.801127177335504	0.923337043240231
Merged-chr11-93821718-4	chr11	93821648	93821848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	64018.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	8.09886380535038	8.03965095365466	8.13783158081144	8.19974597002567	8.07474626573218	8.27139557615919	8.18842668277243	7.93183382404039	-0.00334828489866906	0.983547383379091	0.994063544735471
Merged-chr10-83946721-4	chr10	83946626	83946826	+	971.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153971.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	5.07081859273043	5.24328983589176	5.33360971390048	5.67298805828013	5.36365795357626	4.97251870656261	5.41940964604376	5.49586787498821	-0.0696503934175362	0.829040431180048	0.934333879868872
Merged-chr1-134405989-9	chr1	134406000	134406200	+	998.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355133, intron 1 of 8)	CpG	319.0	NR_149307	72017.0	Mm.280230	NM_028057	ENSMUSG00000026456	Cyb5r1	1500005G05Rik|B5R.1|C80155|Nqo3a2	cytochrome b5 reductase 1	protein-coding	5.35158735132126	4.76116804104014	5.05267797004663	4.8605536817763	4.99774532147354	5.15836586882458	4.99404493707823	5.3750880391195	0.23625128207814	0.47803359887831	0.754192228775143
Merged-chr3-95301534-3	chr3	95301433	95301633	+	733.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085383, intron 6 of 12)	intron (NM_001085383, intron 6 of 12)	5271.0	NM_001085383	71790.0	Mm.218844	NM_023628	ENSMUSG00000015702	Anxa9	1110003P15Rik|2310069F17Rik	annexin A9	protein-coding	4.04373152796188	3.95869692686334	3.85000027896726	3.91454967853432	4.18387805389786	3.97038229632384	3.72664166900397	3.89917316755415	0.0665779197541868	0.879860909110659	0.955009601536912
Merged-chr2-103785952-4	chr2	103785856	103786056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111292, intron 1 of 16)	intron (NM_001111292, intron 1 of 16)	11122.0	NM_001111290	53872.0	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	5.31106371056718	5.51907506476818	5.49321685894085	5.4710993235841	5.48023607112796	5.77466500208158	5.54690673101865	5.76608613397172	0.318100452790006	0.239926578910935	0.550399004463438
Merged-chr13-67268728-3	chr13	67268620	67268820	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_155551, exon 1 of 6)	non-coding (NR_155551, exon 1 of 6)	274.0	NR_155551	238690.0	Mm.306358	NM_001001152	ENSMUSG00000055480	Zfp458	BC062958|Gm33446|Rslcan-7|Znf728|mszf59-2	zinc finger protein 458	protein-coding	5.28755194515206	5.10964219118542	5.52742817553187	4.92306278360971	4.45681620338468	4.59712725821292	4.39212209646168	4.77018672329359	-1.35780471406962	0.000207344013191105	0.00375058183352724
Merged-chr16-38550211-4	chr16	38550088	38550288	+	958.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001300827)	promoter-TSS (NM_001300827)	68.0	NR_153380	224143.0	Mm.284366	NM_172380	ENSMUSG00000034064	Poglut1	9630046K23Rik|Clp46|Ktelc1|Rumi|wsnp	protein O-glucosyltransferase 1	protein-coding	5.61994960927244	5.35709864043189	5.71490838507531	5.5986647403815	5.36248068947337	5.39916839240147	5.09337483929857	5.21878766728162	-0.530407374017545	0.0641827731398605	0.269221295469807
Merged-chr6-99263684-2	chr6	99263584	99263784	+	845.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053202, intron 2 of 18)	intron (NM_053202, intron 2 of 18)	2831.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	3.25015621963126	3.25667652643134	3.42760791114774	3.43406112138653	3.50111808824531	3.4845106794222	3.51883089861904	3.47969301649875	0.492492508121882	0.327720725199737	0.639159620583501
Merged-chr2-153557041-2	chr2	153556941	153557141	+	793.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27070.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	2.8852531421183	2.84995802678777	3.01302483219504	2.41950452832803	2.92736104639009	3.12666979655039	3.16954825737337	3.18170874976198	1.2929882425112	0.05300936308414	0.240114131027492
Merged-chr4-135256750-4	chr4	135256648	135256848	+	916.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	16012.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	4.72306303128844	4.90160389073608	4.32550846565441	4.98410462238486	4.63171148207025	5.00441769131294	4.30739133721056	4.86452430639807	-0.0946491641907006	0.811295332704025	0.926950255422823
Merged-chr2-124704392-4	chr2	124704310	124704510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	50829.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	5.47942064735923	5.6340432607888	5.71631171590244	5.29072162545908	5.58393471947907	5.37095461998896	5.66324661366949	5.91055926091507	0.205749389864527	0.474205015789216	0.751607118426792
Merged-chr5-108727007-1	chr5	108726907	108727107	+	653.0	f1_c57bl6.idr	Intergenic	Intergenic	32778.0	NM_054071	116701.0	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	2.80196110474989	2.70214262466265	2.96833128539318	2.69882908214385	2.46875118416532	2.64612018929654	2.4614794870874	2.7404005707419	-1.09800094180047	0.113123638708176	0.371758574926268
Merged-chr18-35022469-4	chr18	35022366	35022566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68115.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	5.61368703129101	5.23021497305607	5.58996328612786	5.1677649161188	5.15564749281128	5.32437408080522	5.4582717453004	5.70480673621385	0.0344802042187484	0.911797120871427	0.967044077557292
Merged-chr7-28373865-3	chr7	28373742	28373942	+	993.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1180.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	4.97857163681713	4.99456831570831	4.4204310085477	4.37213982738331	4.82199701812228	5.01594188812816	4.81951229515877	4.97598529676224	0.400458449057527	0.28130349082212	0.5933942202302
Merged-chr11-49847490-4	chr11	49847370	49847570	+	644.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016961, intron 1 of 11)	intron (NM_016961, intron 1 of 11)	719.0	NM_016961	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	3.99903729324295	4.12798652022251	3.89314796682403	3.90744708554763	3.92433648178876	4.12452063443436	4.12618916898337	4.65911869687003	0.64444915729768	0.145618300183047	0.425299125547951
Merged-chr7-28808398-4	chr7	28808303	28808503	+	954.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2487.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	4.61264136276291	4.61922731733406	4.83453577686304	4.77765747696302	4.8361805217567	4.52444390356196	4.59217338835856	4.48377079714458	-0.191039841455644	0.589533425605828	0.820464677958613
Merged-chr10-57603108-4	chr10	57603019	57603219	+	944.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28862.0	NM_008863	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	4.78679526189519	5.16891030392442	4.58271300104873	4.77322382815113	4.80270454939537	4.80300275198664	4.76500872081085	4.99325172946743	-0.00841376768293956	0.98056253919701	0.99281244474172
Merged-chr4-101657401-4	chr4	101657288	101657488	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175036, intron 3 of 3)	(A)n|Simple_repeat|Simple_repeat	9605.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	5.02609772837476	5.01934676422043	5.28808502898433	5.41910511441377	5.11641258395604	5.09083723521789	5.37389333202786	5.47475234141578	0.103088014364815	0.743454080534843	0.89894073126818
Merged-chr6-123175539-6	chr6	123175477	123175677	+	878.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004159, intron 2 of 5)	intron (NM_001004159, intron 2 of 5)	2554.0	NM_001004159	381809.0	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	3.96477926758101	4.16212254570152	4.2367119844552	3.96231619008557	4.07159826899482	3.8662587872184	3.99779925443441	4.05990399267811	-0.197361888264841	0.640663650913025	0.848256856489403
Merged-chr3-60486103-4	chr3	60485976	60486176	+	987.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253713, intron 2 of 9)	intron (NM_001253713, intron 2 of 9)	13246.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	5.18175868656176	5.21169184338675	4.72702796088045	5.37706543334678	5.59859113577031	5.3879022135497	4.83398879092228	5.27153203641998	0.276283870433777	0.429960889460921	0.720692008735168
Merged-chr10-120113025-4	chr10	120112915	120113115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080446)	promoter-TSS (NM_080446)	-50.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	8.38352645406913	8.29816548996325	8.44739529645146	8.63092329283189	8.42410183175488	8.49666332592512	8.76231093789567	8.21483697192526	0.0485998259457595	0.786485956396524	0.91697434709825
Merged-chr12-85468876-4	chr12	85468757	85468957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5033.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	8.19304896825837	8.19774940034586	8.13998779037965	8.29790107111726	7.94844556073507	8.03452827439422	8.15565643523087	8.05160496144473	-0.212825440868206	0.17176563287635	0.465089336091783
Merged-chr17-35869671-5	chr17	35869613	35869813	+	895.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146710, intron 2 of 3)	intron (NM_001146710, intron 2 of 3)	3098.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	4.15502915134792	4.74506376000285	4.29924566782236	4.16049063977208	4.09004891302984	4.59976223055267	4.44789079105867	4.25049863504608	-0.0151017051215734	0.971578558731291	0.989698355367312
Merged-chr11-54628526-4	chr11	54628447	54628647	+	943.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 11 of 28)	intron (NM_001252494, intron 11 of 28)	32401.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	4.70295456489889	4.9739059000207	4.40398888974299	4.78691655158169	5.83499695023437	5.61116394181963	5.25008959787782	5.05299278960548	1.38294375458626	0.000112582936265732	0.00224092304822666
Merged-chr13-32935119-4	chr13	32935010	32935210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30403.0	NM_011454	20708.0	Mm.36526	NM_011454	ENSMUSG00000042842	Serpinb6b	NK13|Spi12|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6b	protein-coding	6.9778647636319	6.87762728983091	7.41002649176074	7.39049961356677	7.02054173723709	6.88558537869064	7.01841485671935	6.86684729025549	-0.331654675438637	0.123708104378637	0.390155485912845
Merged-chr18-54971499-4	chr18	54971392	54971592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	Lx5c|LINE|L1	18688.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	7.86544927175435	7.61670837104732	7.01597584921154	7.62767802384179	7.37067068044809	7.64745937516147	7.48891305785716	7.56557448724535	-0.068238275574385	0.753638299098626	0.902798885097597
Merged-chr5-18013842-1	chr5	18013742	18013942	+	705.0	f0_balb.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	51272.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	3.24569746505206	3.28930868782517	3.36083331013026	3.39688804436483	3.58551405812976	3.16083137561828	3.29260300860766	3.30304299847196	0.0961431372361824	0.858156969355384	0.946520515104393
Merged-chr6-94163256-5	chr6	94163143	94163343	+	884.5499880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	74199.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	3.19996088680997	3.47131626305693	4.08625921750203	3.45722124872392	2.82835337286977	3.03329481480901	3.12415114591868	2.99351664354193	-2.39030709631232	0.000339116620927089	0.0056134841769696
Merged-chr18-34888706-4	chr18	34888616	34888816	+	987.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27509.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	5.38280241962112	5.29468894148946	5.21322122821004	4.92984079368759	5.05988429255689	4.92047034054391	5.18741559013789	5.08172053731024	-0.251098638971214	0.428294571994512	0.719325810566156
Merged-chr1-135148293-2	chr1	135148193	135148393	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026823, intron 1 of 6)	intron (NM_026823, intron 1 of 6)	1459.0	NM_026823	68724.0	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	3.26084943709045	2.84023960744311	2.93700233190048	2.84324512073599	2.8464813744061	2.84458354838882	2.92647034595498	2.93552957691735	-0.379583443222032	0.538304850655295	0.791477449791602
Merged-chr4-6225462-4	chr4	6225360	6225560	+	851.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34355.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	3.8616694124536	4.26486829144991	4.03799628353579	4.12671153345967	4.93446971212668	4.37042398043814	4.43750665628987	4.56974516955942	1.22059234588716	0.00296166626064917	0.0316529193343465
Merged-chr9-116181857-3	chr9	116181738	116181938	+	793.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-6475.0	NM_029575	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	3.14726009116319	3.19446554411248	3.26376669330032	3.44620642807639	2.89081011769334	3.25830167960043	3.19507574687301	3.20534201401683	-0.534249544279116	0.354427930763914	0.661123868126645
Merged-chr13-52588023-4	chr13	52587912	52588112	+	962.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198977, intron 1 of 13)	MLT1A1|LTR|ERVL-MaLR	4575.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	5.18089686548973	5.2714257556451	5.31996808005534	4.95420418218663	4.65714488535073	4.63777582354718	4.70799838000594	4.88338092686975	-0.911347832396846	0.0063978568778044	0.0569099043620644
Merged-chr7-121078030-4	chr7	121077919	121078119	+	949.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3489.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	4.86054806799261	4.87642135789024	4.71469059135675	4.77499098993165	4.99779677480433	4.54066296003062	4.76754150580573	4.63174669613907	-0.0943844449376432	0.784532363883787	0.916077120786182
Merged-chr10-80151903-4	chr10	80151805	80152005	+	976.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347117, intron 4 of 7)	intron (NM_001347117, intron 4 of 7)	2223.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	4.95734943538666	4.93050708191429	4.6645733010823	4.85499664493963	5.1347479746554	4.79779774047211	4.51671968152061	4.74128977836739	-0.0504774641112385	0.886721296186099	0.957477133166922
Merged-chr3-20026709-3	chr3	20026585	20026785	+	949.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 4 of 16)	intron (NM_080634, intron 4 of 16)	8625.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	4.04424662283105	3.65804832577015	3.95067781187586	4.07077253852323	3.72160825461193	4.16868844058481	3.93388638198454	3.99621218152545	0.0285438539944215	0.949920086797506	0.982126657618726
Merged-chr17-24708041-2	chr17	24707934	24708134	+	960.5	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_145396)	promoter-TSS (NM_145396)	-381.0	NM_145396	213773.0	Mm.100353	NM_145396	ENSMUSG00000040688	Tbl3	9430070M15Rik	transducin (beta)-like 3	protein-coding	3.54882751017219	3.47921258680501	3.41771980165125	3.12630334782092	4.16661096209452	4.10327199366104	4.04493190485728	4.2212001416965	2.31528583398353	8.50187899210231e-07	3.02275347042383e-05
Merged-chr2-155764136-4	chr2	155764039	155764239	+	976.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11203.0	NM_010808	17391.0	Mm.389325	NM_010808	ENSMUSG00000027612	Mmp24	AU040325|MMP-21|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding	4.95367191692373	5.07011847106996	4.32589596714545	4.26751330021499	4.95167942117748	4.88939033847449	4.20358984370628	4.4204299667322	-0.0912436289809676	0.839204218130203	0.938895262970456
Merged-chr1-33757801-4	chr1	33757697	33757897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145392)	promoter-TSS (NM_145392)	-47.0	NM_145392	213539.0	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	5.30822591938264	5.28278596883267	5.68819340553422	5.3688791753803	5.44936126115856	5.48460611942348	5.61239477300936	5.53589760667434	0.181435539684201	0.515476221387917	0.777533445789008
Merged-chr8-122946020-4	chr8	122945912	122946112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	96272.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	6.43799160246973	5.91510219580786	5.72203670385198	6.19801816279298	6.32568468624589	6.17812102661404	6.62546592281202	6.01910375807153	0.316522917523746	0.248731619082228	0.559973341869886
Merged-chr5-135632635-4	chr5	135632548	135632748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146002)	promoter-TSS (NM_146002)	-6.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	7.68483107117568	7.88816398476182	7.42597442169931	7.66658601402432	7.82866849682344	7.99099919909823	8.02174536897229	7.74623365195641	0.287453069439633	0.112782515608099	0.371345484247799
Merged-chr9-107291110-4	chr9	107291078	107291278	+	925.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1301.0	NM_178907	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	4.403660470003	4.28850976794967	3.85363110784509	4.15692829564988	4.63140788066308	4.40344791900694	4.25668024930018	4.4416280807617	0.613582441054814	0.129135366035447	0.399901075442119
Merged-chr2-133480667-4	chr2	133480574	133480774	+	959.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71485.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	4.79172093167023	4.43086097534273	5.22212788621634	5.55530063730252	4.94618217384498	4.84799659036455	5.01681664302681	4.52990533803943	-0.458454393553873	0.268462852732416	0.580131084080006
Merged-chr13-81396935-2	chr13	81396835	81397035	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 78 of 89)	intron (NM_054053, intron 78 of 89)	236209.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	3.11363255656999	3.01810515812909	3.45178182732382	3.1492607005163	3.20316404259454	3.40761274205675	3.3350600015126	3.23495323713298	0.392730978169812	0.474390129907807	0.75165589989079
Merged-chr9-90263077-3	chr9	90262981	90263181	+	899.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	7688.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	4.12390908719335	3.73506880491193	3.58428966456563	3.71960582918852	4.23950764367927	4.25075274211191	4.2696896653424	4.03033959689149	1.07863316612564	0.0138279963438277	0.099140103923984
Merged-chr17-73301479-3	chr17	73301372	73301572	+	604.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	97824.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	3.40637117717679	3.23301998419303	3.29591360382089	3.27440031754975	3.2892841467784	3.46604179426723	3.28368043064561	3.29420292836342	0.116024437625982	0.822806826738799	0.932185203682946
Merged-chr9-55253648-4	chr9	55253566	55253766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	intron (NM_032002, intron 3 of 7)	29959.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	6.18290022684359	6.53084331609572	5.98320527492741	6.29593216093962	5.62642148556571	5.53207910949252	5.71519053595435	5.76625318446748	-0.967333789357811	0.000179705492567886	0.00333135912885288
Merged-chr2-76255110-2	chr2	76255009	76255209	+	601.25	f0_balb.idr|f1_c57bl6.idr	intron (NM_001081033, intron 2 of 19)	intron (NM_001081033, intron 2 of 19)	83544.0	NM_001081033	241489.0	Mm.246613	NM_001081033	ENSMUSG00000075270	Pde11a	6330414F14Rik|A630086N24Rik|Gm350|PDE11A1	phosphodiesterase 11A	protein-coding	3.25053572919589	3.36778175046132	3.25094954957	3.31352193503031	3.21721768612317	3.23997905003389	3.29437737354064	3.12943356667666	-0.291282201407922	0.583996812630215	0.817485282428486
Merged-chr15-78900697-4	chr15	78900584	78900784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316685, intron 1 of 17)	intron (NM_001316685, intron 1 of 17)	916.0	NM_009164	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	5.53286350828568	5.54640367073587	5.80057639860767	5.40679297524865	5.31022516654292	5.73434277387033	5.23820807307741	5.52993111359726	-0.188761077069349	0.516564023714291	0.778279996996913
Merged-chr8-36612705-5	chr8	36612553	36612753	+	873.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	1290.0	NM_015802	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	3.63040240435385	3.73465940806155	3.93429169556747	4.02048060148501	3.7913583651093	3.62685900235664	3.7760325630142	3.73811399750891	-0.333185466486135	0.475386037343177	0.752245403762616
Merged-chr3-87223815-2	chr3	87223712	87223912	+	747.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	39712.0	NM_030707	80891.0	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	2.40553337857073	2.4274192066463	2.40572403469355	2.08178341578708	3.40064295556948	3.03319382815256	3.17424392440127	2.97351947635017	6.46330057386532	3.60275860306415e-11	2.95438657381916e-09
Merged-chr7-122257264-3	chr7	122257156	122257356	+	963.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31869.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	4.41991135529971	4.29126082190793	3.97732284460971	4.14937499892351	3.86459186888937	3.99015160613903	3.90777460945222	4.52487698136279	-0.304425440716194	0.500410777324343	0.768850577358824
Merged-chr7-44496463-4	chr7	44496316	44496516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028169)	promoter-TSS (NM_028169)	97.0	NM_197991	69683.0	Mm.294759	NM_197991	ENSMUSG00000008140	Emc10	2310044H10Rik|5430410O10Rik|Inm02|Mirta22	ER membrane protein complex subunit 10	protein-coding	7.33006514292352	7.19925525238491	7.13460626561768	6.96152816754389	7.30232542790946	7.54777924388339	7.27448087465035	7.31607395629304	0.283820592425167	0.137841409560451	0.412990431919153
Merged-chr10-81523165-4	chr10	81523074	81523274	+	883.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010304, intron 1 of 6)	ID_B1|SINE|B4	1051.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	4.06457124943577	4.18806890877308	4.01413147436394	4.39089559719971	4.46380946158785	4.13714196060001	4.04837671902442	4.24853018175611	0.135126003371295	0.748405105353059	0.900999421474581
Merged-chr16-8836776-3	chr16	8836666	8836866	+	744.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081400, intron 2 of 3)	intron (NM_001081400, intron 2 of 3)	6666.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	3.35591408023165	3.58772403174573	3.4661435081501	3.49685749605493	3.48644949254243	3.21343899410241	3.28620919462702	3.29610180700442	-0.521079447463189	0.32130083804706	0.633056953827648
Merged-chr15-84246414-4	chr15	84246298	84246498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	14355.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	6.38277700114143	6.2360636133743	5.9777940104025	6.10139715496956	6.67294349765913	6.29098814409261	6.3683563511997	6.41356201347511	0.415467781848474	0.0757823202574003	0.297425549933916
Merged-chr2-38290458-4	chr2	38290358	38290558	+	969.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-3074.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	4.73011964296748	4.30249992868395	4.53121541941457	4.69120556432036	4.97603327711604	4.78834215122435	4.84691482313711	4.43909347271029	0.43421781656189	0.239123590470374	0.549600505217823
Merged-chr1-160246142-3	chr1	160246014	160246214	+	956.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038621, intron 4 of 8)	intron (NM_001038621, intron 4 of 8)	-33222.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	4.84760777739651	3.95298031793762	4.25812743187721	4.72540952053768	3.92574742933593	3.90719699740181	3.94477860003526	4.06508534683497	-1.35692409954225	0.00353881087861187	0.0363633635814514
Merged-chr10-8878989-4	chr10	8878897	8879097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	B1F|SINE|Alu	7073.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.05762645756745	5.1819909258935	5.16354865931514	5.11115473583427	5.54126861100381	5.3397026624395	5.77789413685633	5.19319073127854	0.642909710114867	0.0310778130106901	0.171322568457696
Merged-chr3-28805381-4	chr3	28805231	28805431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026517)	promoter-TSS (NM_026517)	-177.0	NR_154889	68028.0	Mm.21724	NM_026517	ENSMUSG00000039221	Rpl22l1	3110001N18Rik|AU041196	ribosomal protein L22 like 1	protein-coding	7.79070148479745	7.92332264120629	7.83171758739759	7.83541504087784	8.2834798969455	8.27587905161431	8.32534056637055	8.16042986134492	0.535064709510593	0.000513194469383569	0.00787888769888067
Merged-chr18-53268371-4	chr18	53268253	53268453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	22691.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	6.04439965633298	5.71732935994379	6.48021404294776	6.34683045117253	6.1074573353448	5.70008542215266	6.38452410576946	6.16466465685477	-0.106638909571948	0.709810542212079	0.883774219565378
Merged-chr11-78165571-4	chr11	78165462	78165662	+	969.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009423)	promoter-TSS (NM_009423)	-12.0	NM_009423	22032.0	Mm.390418	NM_009423	ENSMUSG00000017386	Traf4	A530032M13Rik|CART1|msp2	TNF receptor associated factor 4	protein-coding	5.3607442592365	5.08425507774545	4.7507488227386	4.99767043152678	5.49115303973758	5.92250970608404	5.44340223175231	4.99679013960378	0.790537548076403	0.021345988289383	0.133700717302547
Merged-chr11-59554359-4	chr11	59554247	59554447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 5 of 9)	RSINE1|SINE|B4	11661.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	6.67638071122945	6.80373454731696	5.81031399049698	5.83663388745364	6.62325903410979	6.46540388433613	6.27500464348646	6.26494341046736	0.0892041684425419	0.773940045114327	0.911669791582544
Merged-chr13-41600162-4	chr13	41600051	41600251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6065.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	6.5863769192927	6.86705412208965	5.92723783656579	6.51101766643437	6.71326999054389	6.54367209080591	6.7274228294821	6.26552714855187	0.086188322623452	0.7467507355038	0.900253617240193
Merged-chr3-88579644-4	chr3	88579543	88579743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356316)	promoter-TSS (NM_001356316)	35.0	NM_025448	66256.0	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|SSR-beta|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	5.90992464725468	5.55060168802744	5.82461563143896	5.64939943865053	5.58111872418602	5.54684998546411	5.43595066167559	5.88582086851145	-0.184395596032797	0.501106023221183	0.769095113768232
Merged-chr5-99219962-2	chr5	99219863	99220063	+	547.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 13 of 13)	PB1D10|SINE|Alu	32964.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.3985318246861	3.45801097139675	3.28258205195136	3.27058953873401	3.47530977988386	3.67282217247019	3.32961875695555	3.15355320130429	0.245913407197399	0.643105964372978	0.849459897971419
Merged-chr4-12090008-4	chr4	12089935	12090135	+	844.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198957, intron 2 of 3)	CpG-9730	665.0	NM_198957	77604.0	Mm.474129	NM_198957	ENSMUSG00000052137	Rbm12b2	AV299215|C430048L16Rik|Rbm12bb	RNA binding motif protein 12 B2	protein-coding	4.30835009073697	4.17209147150116	4.35350658510602	4.26750213321749	4.04307343235473	4.60936776200925	4.53355151495185	4.58899178540566	0.419638887022301	0.294398275010068	0.606634274221694
Merged-chr17-67194323-4	chr17	67194243	67194443	+	958.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	160116.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	5.05446124578012	5.52337063896381	5.26787157778468	5.31269386950885	4.86364686003559	4.76399697072521	4.60722177563527	4.67013723265114	-1.11508398609854	0.000751541488734623	0.0107116483032923
Merged-chr18-36304553-4	chr18	36304461	36304661	+	912.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4460.0	NM_001267796	109169.0	Mm.426423	NM_001267796	ENSMUSG00000110185	Igip	6330403M23Rik	IgA inducing protein	protein-coding	4.86773372181244	4.22773555768431	4.31012637225084	4.7265491365372	4.82328670060565	4.53686058007254	4.51771031264135	4.79906962294989	0.245339420252849	0.530409365320419	0.786525451847713
Merged-chr13-101914284-4	chr13	101914130	101914330	+	853.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-146013.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.40396464395856	4.25652495939024	4.76860146945021	4.63978173757351	3.96182775210596	4.30147248817738	4.38452223176918	4.26874303525456	-0.729750113756418	0.0733658912008966	0.291717222358011
Merged-chr11-115476125-2	chr11	115476025	115476225	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001361594, exon 2 of 3)	exon (NM_001361594, exon 2 of 3)	458.0	NM_001361594	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	2.82516629794009	2.73553645175374	2.89045824779636	2.51911735329921	2.72359321137958	2.93630568606902	3.20892953316374	3.12034698552168	1.19187870644131	0.0645368437476083	0.270044689525581
Merged-chr3-135485585-4	chr3	135485462	135485662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027288)	promoter-TSS (NM_027288)	-49.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	6.59263385009757	6.57503591363168	6.46114114727068	6.8020662856256	6.43382961752136	6.56633969518081	6.86448630693044	6.3846353835797	-0.0771046071066657	0.734623991276375	0.895082097863042
Merged-chr5-17854707-4	chr5	17854606	17854806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	-4914.0	NM_001159556	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	8.15981387367676	8.27750065249507	8.33762652543012	8.53566948739507	7.95667535948671	8.02017910513604	8.10405836166771	7.94297098867239	-0.430591433205786	0.00954165859474291	0.0762942655575257
Merged-chr16-97272390-2	chr16	97272290	97272490	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84338.0	NM_019517	56175.0	Mm.97885	NM_019517	ENSMUSG00000040605	Bace2	1110059C24Rik|AEPLC|AI850424|ALP56|ARP1|ASP1|ASP21|BAE2|CDA13|CEAP1|DRAP	beta-site APP-cleaving enzyme 2	protein-coding	2.91893194486534	3.14443777922113	2.97869281380444	2.882562464156	2.86577704437104	2.82773526922067	2.78320067001848	2.8556980957035	-0.663439808140396	0.279057183031405	0.591266631868559
Merged-chr13-81238140-4	chr13	81238037	81238237	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	274063.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	5.34952808672146	5.29737082488143	5.1005309225358	5.43674737560307	5.10305997465277	4.8373174060896	5.17454204503505	5.57858671287783	-0.200135256080413	0.535148736995725	0.789605355415906
Merged-chr13-52982891-4	chr13	52982764	52982964	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1825.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	5.77564073748275	4.93381585603503	5.29814776344684	4.8535094027509	5.50143756728121	5.74478832084507	5.10987021157618	5.26346732612063	0.304741547814486	0.400694709045062	0.698422085421392
Merged-chr11-115612356-2	chr11	115612256	115612456	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001243586, exon 1 of 5)	5' UTR (NM_001243586, exon 1 of 5)	147.0	NM_027162	69674.0	Mm.390387	NM_027162	ENSMUSG00000020743	Mif4gd	1110014L05Rik|2310075G12Rik	MIF4G domain containing	protein-coding	2.97033195372769	2.91638956905943	2.91009741099736	2.52892859410734	3.07453991086762	2.9553079846489	2.83692959189078	2.9691310396182	0.575903508993101	0.367569715567465	0.672036908138686
Merged-chr14-55722198-4	chr14	55722062	55722262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019519)	promoter-TSS (NM_019519)	40.0	NR_153435	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	5.52504717999152	5.7331068938546	5.97960863365449	5.57600961656342	5.50638697353014	5.88694962342057	5.55412547841629	5.73313144144068	-0.0604647779188115	0.82663652944149	0.933495605798985
Merged-chr4-136116036-2	chr4	136115935	136116135	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27787.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	2.92985594169503	3.02985303171677	2.99030595734395	2.65205741101066	3.14620922596726	2.90827366820609	2.97893329596497	2.73043647137525	0.230135795770433	0.717291731423422	0.886969736012834
Merged-chr10-69320944-4	chr10	69320842	69321042	+	970.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31970.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	5.4787750236131	5.14604615633989	5.53374260559573	5.56992996891124	5.55791499710589	5.12116613137088	5.60666885022278	5.60667475100879	0.0789136985368485	0.790206560690345	0.918828686312538
Merged-chr6-87722892-2	chr6	87722792	87722992	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7977.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	3.34297993060349	3.02442954571034	3.13118681440857	3.34066226065552	3.07421565986456	2.8334730614329	2.93613199850116	3.12955927933168	-0.890602445568196	0.139882536413817	0.415919589765617
Merged-chr2-136891534-4	chr2	136891461	136891661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141946)	promoter-TSS (NM_001141946)	-33.0	NR_149746	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	8.74769706212219	9.00575926552888	8.79120606335734	9.01770435861456	9.09234673755228	8.93964396492596	9.10559723014058	8.85025479162266	0.126881767735073	0.414190989460577	0.709005478658793
Merged-chr16-35769495-4	chr16	35769385	35769585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175111)	promoter-TSS (NM_175111)	-129.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	8.01455655900775	8.43828133937224	8.10626285649048	8.05920197787097	8.06513257705292	8.05940301357973	7.82873815628336	7.47590136003006	-0.365043245640211	0.0698682709073781	0.28289451230864
Merged-chr11-48926445-2	chr11	48926345	48926545	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045540, intron 1 of 2)	L1_Rod|LINE|L1	737.0	NM_001045540	620913.0	Mm.452174	NM_001045540	ENSMUSG00000048852	Gm12185	Irgb2b1	predicted gene 12185	protein-coding	2.39230621381171	2.68812677979165	2.54127271178349	2.25499520276586	2.52244040268129	2.84826706749318	2.66530046594281	2.90662939895668	1.37425755431689	0.0542224983713427	0.243210234518483
Merged-chr7-38085048-4	chr7	38084938	38085138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	22452.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	9.12435304547782	9.21996987420711	8.88021829085776	8.92305369491662	9.28004753355935	9.45514956476475	9.48037540369554	9.11685549910256	0.367009477509964	0.0239388365223209	0.144230780838182
Merged-chr6-4955379-4	chr6	4955278	4955478	+	721.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	52058.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	4.2555453796859	3.87612699363713	4.21474872518138	4.21427026754361	3.96562745305261	3.75931168100134	4.01661580125747	4.25347600998211	-0.365747800710426	0.403170303587033	0.700650887226461
Merged-chr2-145813023-4	chr2	145812908	145813108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	26892.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	7.72850964621958	7.76601484117815	8.13016240874473	8.19312711502581	7.75842522362848	7.96354259016884	8.09168780622558	7.77309660605933	-0.0997954397840989	0.606397844410887	0.829368409964156
Merged-chr11-109425816-4	chr11	109425708	109425908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025275)	promoter-TSS (NM_025275)	-138.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	8.79246510095993	9.14773293008524	8.73511214034824	8.46490634766345	9.11007931242452	9.20678149171123	8.7582356602618	8.78829135471672	0.218538903395931	0.269518489415182	0.581238507864386
Merged-chr12-108937691-4	chr12	108937591	108937791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	43419.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	5.78412756386896	5.97417444371839	6.06296277905382	6.26882666854746	5.34778500352402	5.47730530741245	5.70716646961083	5.32663160047316	-0.960683164290908	0.000495460798907877	0.00766187225832399
Merged-chr15-73442586-4	chr15	73442494	73442694	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19403.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	5.76626079393691	5.49591514092818	5.61839103578117	6.08868998483136	5.71464384487611	5.32792682046455	5.59007198437322	5.5606833486957	-0.363464665478103	0.214410236770975	0.520178132967081
Merged-chr1-157416801-4	chr1	157416694	157416894	+	868.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027984, intron 2 of 2)	intron (NR_027984, intron 2 of 2)	-4199.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	3.80011269233299	3.76490060039691	4.23338328582088	4.15668655760908	4.09137827390107	4.13416101505022	3.99409357389658	4.10220298764315	0.177135921333317	0.685440964851526	0.871409613223223
Merged-chr16-57259960-4	chr16	57259873	57260073	+	878.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28507.0	NM_001358433	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	4.19629441382284	4.02731667536441	4.36479599456604	4.40915046830376	4.21965515253899	4.0727435977781	3.9874156826024	4.14873640050172	-0.382540939269211	0.353941632614317	0.660753552975622
Merged-chr7-75645737-3	chr7	75645683	75645883	+	800.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	190249.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	3.64581790299981	3.89932794643169	4.52706075598831	4.35899821458949	3.33629491182873	3.290680859965	3.38312076285364	3.39305490307421	-2.63134905063688	6.56521686355383e-06	0.000189115973747834
Merged-chr12-117765027-4	chr12	117764924	117765124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78837.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	5.95945771400254	6.01058725601652	5.86756938253928	6.0679206188056	5.90005516130468	6.28254964960146	5.88480510496881	6.1039420920032	0.0908032595823711	0.711360379282079	0.884405406929924
Merged-chr8-85800389-4	chr8	85800310	85800510	+	888.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028007, intron 6 of 17)	intron (NM_028007, intron 6 of 17)	40539.0	NM_028007	71927.0	Mm.61018	NM_028007	ENSMUSG00000031703	Itfg1	2310047C21Rik|AI314457|Cda08|D8Wsu49e	integrin alpha FG-GAP repeat containing 1	protein-coding	4.14492934872098	3.69666930472567	3.88654129677554	4.44005365025471	4.23716572606556	4.27152568073761	4.17313117876472	4.50755433599109	0.517946485407164	0.264450832319044	0.576455127446606
Merged-chr10-13008388-4	chr10	13008295	13008495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175102)	promoter-TSS (NM_175102)	-55.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	8.1725081194316	8.3609582937082	7.90692142111897	8.38704499503843	8.49572858887443	8.20806048640619	8.56286230925523	8.13725688053661	0.177329292983678	0.348637061069621	0.656307354205775
Merged-chr5-90500960-2	chr5	90500860	90501060	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007423, intron 7 of 14)	intron (NM_007423, intron 7 of 14)	10246.0	NM_007423	11576.0	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	3.74308184797276	3.46228513048229	3.29932227035408	3.63735544531578	3.68284828935276	3.59910015524041	3.52678278851718	3.64400013311833	0.206986814553688	0.676376954328161	0.867097153109958
Merged-chr6-43655053-4	chr6	43654953	43655153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 2 of 8)	intron (NM_013861, intron 2 of 8)	11225.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	6.32143799654319	5.75424223229535	6.23568304931693	6.56501076029022	5.78006833032569	5.83029610897634	5.87833501445951	5.58853936274032	-0.771853032096542	0.00578681850315144	0.0528982714213847
Merged-chr12-85596394-2	chr12	85596291	85596491	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2714.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	5.19481821781537	5.10799110991162	4.51977593833673	4.83283783740827	5.10071602440463	5.18036114210296	5.07985267484591	4.82258676257543	0.229811952471262	0.503129145858648	0.770205163194888
Merged-chr7-68748483-4	chr7	68748469	68748669	+	992.142822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042592, intron 1 of 7)	intron (NM_001042592, intron 1 of 7)	669.0	NM_001042592	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	4.35597024306288	4.34442867811614	4.90171769550409	4.31812489034911	4.55256652500652	4.83059434953399	4.59730326817991	4.89830961365174	0.503588906548068	0.187532285404298	0.485957858972414
Merged-chr2-165321006-4	chr2	165320914	165321114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302752)	promoter-TSS (NM_001302752)	-188.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	6.58382368199491	6.13662285405812	6.27302997396789	6.65119125124348	6.52108095176024	6.28298179741081	6.38823760953925	6.87599652404742	0.149004959378192	0.555899667871088	0.801730133825154
Merged-chr9-7344319-4	chr9	7344220	7344420	+	921.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001320077)	promoter-TSS (NM_001320077)	-77.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	4.69430587639598	4.45484440914342	4.37993362588324	4.56981434984804	4.46894136014706	4.55336493281785	4.31564852006689	4.3772313432307	-0.228210403475859	0.534648962903791	0.789286995820758
Merged-chr11-103172318-4	chr11	103172227	103172427	+	739.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019679, intron 1 of 26)	intron (NM_019679, intron 1 of 26)	1189.0	NM_019679	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	3.45051812235932	3.88204488496651	3.25592284582953	3.47158268744685	3.78130136360664	3.62635536286645	3.75495248381769	3.67108528210314	0.543113177639538	0.28542112194788	0.597125181175327
Merged-chr6-116077888-1	chr6	116077788	116077988	+	745.0	f0_balb.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-82883.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	3.07613703572554	3.31881521196495	3.18819003241211	3.19248664968902	2.80954071315535	2.77507704555024	2.81173615921113	3.0749192543888	-1.43578043592152	0.0219358950306341	0.136281072564237
Merged-chr12-34787562-4	chr12	34787444	34787644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	129551.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	5.55600640801603	5.70595900679204	5.61313275849206	6.28604655877469	5.44733931527211	5.91876734247427	5.97982238565868	5.58143377220894	-0.170157163435543	0.589600288577088	0.820520439920788
Merged-chr11-48813340-3	chr11	48813264	48813464	+	748.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145377, intron 1 of 5)	intron (NM_145377, intron 1 of 5)	4027.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	3.49001940288645	3.21365385219741	3.64000422413645	3.68877283305287	3.36689289512917	3.30563426539261	3.30940851438472	3.43461021339979	-0.593276680049841	0.265342302353931	0.577001515467012
Merged-chr13-37776932-4	chr13	37776838	37777038	+	975.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49100.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.35763612461832	5.16256455104218	5.44076585021489	5.19451810414389	5.27882418949373	5.38255467211522	4.90089471993274	5.29692525922793	-0.103473952782053	0.733253313879998	0.89443785352112
Merged-chr6-134268216-3	chr6	134268122	134268322	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007961, exon 8 of 8)	3' UTR (NM_007961, exon 8 of 8)	-128107.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	6.35621408595559	6.93869280188668	7.09055173909599	6.90730327117049	4.42615382502529	4.47966207779392	4.66818553371385	4.39074956391377	-4.40858062934882	3.4667076751587e-31	4.74532280019463e-28
Merged-chr10-8505028-4	chr10	8505016	8505216	+	916.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	13709.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	3.46417073400411	3.18970147105771	3.35859677492638	3.66740195433999	3.13088634020639	3.15702674539277	3.39899065404218	3.24134950415441	-0.758360322259079	0.174929814205488	0.469590383048546
Merged-chr12-111456058-4	chr12	111455970	111456170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13409.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	6.28928691815967	7.12442272778089	6.67559951264994	6.08109769556495	6.27798012999796	7.0502802169794	5.92658470085206	6.28587698583708	-0.220966263555662	0.509199353313874	0.773921693917156
Merged-chr12-69507574-4	chr12	69507479	69507679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-32029.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	5.30252866675569	5.31864296962438	5.68554260002014	5.34914653354807	6.07104446314391	5.72859772007395	5.92798830572342	6.07128923455141	0.908891269796077	0.00063941471239719	0.00939378737125275
Merged-chr9-58806118-4	chr9	58806009	58806209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17403.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	5.59015472414738	5.20713785327287	5.07640517743963	5.443626870527	5.51613638353945	5.39399734371155	5.51240592852849	5.53646034446946	0.248268021561966	0.389901272859388	0.690126025603507
Merged-chr1-131018622-5	chr1	131018484	131018684	+	930.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1261.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	4.04053532333835	3.83027428988785	3.74158085388957	3.25837262912251	4.2399132340405	3.80539580569749	4.02267482388198	3.99330700028287	0.816577733597379	0.105305315965181	0.357099908770156
Merged-chr4-86396879-4	chr4	86396788	86396988	+	918.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029967, intron 22 of 27)	intron (NM_029967, intron 22 of 27)	161415.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	5.46470130267077	4.94968465258862	5.46567246252846	5.11892835769454	4.57129448226847	5.42306483410961	5.16385918704149	4.51587482816646	-0.555871031097023	0.152841999085829	0.437291867803211
Merged-chr6-53592514-4	chr6	53592432	53592632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172728, intron 1 of 6)	intron (NM_172728, intron 1 of 6)	19158.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	8.01803248575016	8.09425768106498	7.99912330392787	7.76266761749048	8.0138722986404	8.38307629124668	7.87665486565691	8.02066842271303	0.149845408084031	0.416842170610822	0.710702521364083
Merged-chr2-23040355-4	chr2	23040241	23040441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331044)	promoter-TSS (NM_001331044)	-100.0	NM_145994	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	7.83526712298851	8.04396545714898	7.89628182770712	7.59646898104483	8.0873105991849	8.26279682407196	7.87267048133423	7.94094327531928	0.262936833150502	0.155997104287113	0.441868673088957
Merged-chr1-80759892-4	chr1	80759832	80760032	+	821.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1379.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	3.39147364837292	3.64414619193582	3.66446726476983	3.46349324190938	3.52055456847961	3.78268432759055	3.31864752141681	3.44937661397573	-0.0507934373747187	0.920324805369102	0.97043423951189
Merged-chr3-103858252-3	chr3	103858119	103858319	+	897.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1576.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	3.12882288138086	3.20378485108868	3.25981982599524	3.07216846769917	3.43103751800946	3.70824732865635	3.24797058964565	3.76596603365087	1.36665980577236	0.0105242142235741	0.0819497915129392
Merged-chr9-78006799-4	chr9	78006707	78006907	+	793.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45151.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	3.8042300127066	3.76039379600111	4.34186833897538	3.8217163583168	3.78892863270781	4.13430372094853	4.16732531577966	3.85694134661787	0.123761514469368	0.790681441493813	0.918840742585233
Merged-chr6-118066335-3	chr6	118066233	118066433	+	958.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027526)	promoter-TSS (NM_027526)	-52.0	NM_027526	70727.0	Mm.87660	NM_027526	ENSMUSG00000030134	Rasgef1a	6330404M18Rik|AI835194	RasGEF domain family, member 1A	protein-coding	4.19874322576952	4.50483362352165	4.36385230610448	4.19145471077699	3.84834095933963	3.64644373669557	4.18043954319357	3.95642161279274	-1.04539225647077	0.0189369856884358	0.12331128938955
Merged-chr19-30031242-4	chr19	30031115	30031315	+	975.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144873, intron 1 of 15)	CpG	702.0	NM_144873	109113.0	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	4.58405621042082	4.23241631582321	4.54355653557226	4.54444920894346	4.81194505360326	4.87204829773578	4.52277944652925	4.76981147756679	0.576101411896249	0.107156275968617	0.361174191077289
Merged-chr4-102609855-3	chr4	102609767	102609967	+	788.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	20024.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	3.85929767158968	3.53403003036936	3.45870838150052	3.03088721040419	3.21890140311656	3.14098789210189	3.15481188861406	3.09715601183936	-1.25175213904566	0.0399230777465499	0.201552220080975
Merged-chr13-117028474-4	chr13	117028364	117028564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2948.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	7.00743581759672	6.73613254908049	6.77272399630934	7.41598311595395	6.62182302408042	6.67839204987509	6.75251610556385	6.56502783236894	-0.528764732600683	0.0256413797628223	0.151049223714138
Merged-chr7-67526370-2	chr7	67526270	67526470	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028144, intron 8 of 8)	Lx8|LINE|L1	118866.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	5.07704291518398	5.31978579235303	4.94508459053878	5.54050439494421	4.62253440326735	4.67201799847158	4.51704485184958	4.71273976494748	-1.26546737549799	0.000281102380268619	0.00481091279758116
Merged-chr2-103849021-4	chr2	103848923	103849123	+	844.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38401.0	NR_040514	78031.0	Mm.243867	NR_040514	ENSMUSG00000086687	4930547E08Rik	-	RIKEN cDNA 4930547E08 gene	ncRNA	3.510994282741	3.77361062671359	3.45338293704648	3.61027416291162	3.73079848958161	3.44059472885696	3.75239360370119	3.61872698202233	0.156231657458303	0.748583319321591	0.901016488594137
Merged-chr9-102879714-4	chr9	102879616	102879816	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042607, intron 6 of 14)	intron (NM_001042607, intron 6 of 14)	44796.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	5.54979434497459	4.93475864225293	5.20114011375052	5.48236156606842	5.45210053700573	5.44215287261727	5.70988556968851	5.23064272058346	0.26080652485272	0.405401780275106	0.702273581691623
Merged-chr7-107516895-4	chr7	107516791	107516991	+	934.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021889, intron 6 of 6)	Lx8|LINE|L1	-50542.0	NM_172907	244198.0	Mm.77425	NM_172907	ENSMUSG00000051041	Olfml1	6720478C22|AV321997|BC047207|MVAL564|ONT2|mONT2	olfactomedin-like 1	protein-coding	4.83041381983074	4.51162327934377	5.30067164856418	5.1648654351015	4.96203992065755	4.96814509732976	4.84534979207868	4.74998809326442	-0.211992905736578	0.556814095336599	0.802235069284239
Merged-chr11-117657529-3	chr11	117657443	117657643	+	775.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 1 of 21)	intron (NM_198022, intron 1 of 21)	3254.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	3.77380818349467	3.22977372038429	3.39976279633839	3.35833096225735	3.40677149563648	3.45282573794149	3.71046608748	4.02323492519463	0.693633381564242	0.198963763089374	0.500673184364653
Merged-chr14-22813497-4	chr14	22813400	22813600	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-270702.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	5.22213829891797	5.44556689136513	5.64528729692522	5.59680855862556	5.22831762558415	5.46374452172722	5.51779902629959	5.25238349073398	-0.230083341156405	0.426738705916447	0.718132121626281
Merged-chr14-32281777-4	chr14	32281667	32281867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011960, intron 15 of 17)	intron (NM_011960, intron 15 of 17)	-40252.0	NM_001081130	239017.0	Mm.318302	NM_001081130	ENSMUSG00000021913	Ogdhl	-	oxoglutarate dehydrogenase-like	protein-coding	6.23299017806383	6.48977516748129	6.70698759693622	6.61501687956157	6.07354424704802	6.17394701968682	6.35063893384955	6.18942526118127	-0.497840780997843	0.0315288753692763	0.173084267517225
Merged-chr13-100576106-4	chr13	100576007	100576207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23389.0	NM_001360539	18260.0	Mm.4807	NM_008756	ENSMUSG00000021638	Ocln	AI503564|Ocl	occludin	protein-coding	5.39379611348844	5.23197298342497	5.29601959792004	5.68129105060416	6.08073758183945	5.69266937508051	6.07305778056039	5.86223825840778	0.83963509242172	0.00325743535644776	0.0340388901728048
Merged-chr9-107580692-4	chr9	107580594	107580794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019750)	promoter-TSS (NM_019750)	25.0	NM_019750	56441.0	Mm.10305	NM_019750	ENSMUSG00000079334	Nat6	AI225910|Fus2	N-acetyltransferase 6	protein-coding	6.89434762818	6.9408481455295	6.27976746383482	6.59549548978757	6.9610521978335	6.80171489260337	6.79508287131307	6.58795637222472	0.136523357276753	0.560122433391241	0.804203083823139
Merged-chr3-88950086-4	chr3	88950003	88950203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_022994, exon 1 of 13)	5' UTR (NM_022994, exon 1 of 13)	179.0	NM_022994	65111.0	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	6.2404194800987	6.21440817582338	7.1967337984342	6.20869217273412	6.01492066502484	6.49577607299922	6.20941616649672	6.43876146363294	-0.350019527973147	0.254207509881737	0.565571827007563
Merged-chr5-146795056-4	chr5	146794971	146795171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011669)	promoter-TSS (NM_011669)	-115.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	8.3896844188112	8.47537115257338	8.14228560801133	8.18212844123927	8.27210021553605	8.63032075396675	8.43298006847839	8.38031812953526	0.163616844712495	0.33579385769655	0.645985702621156
Merged-chr4-137707519-1	chr4	137707419	137707619	+	578.0	f1_c57bl6.idr	promoter-TSS (NM_001331215)	promoter-TSS (NM_001331215)	14.0	NM_001331215	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	2.78917683415708	2.57863652396215	2.73115980883726	2.439908311975	2.35395062341321	2.49649192579542	2.6600138740238	2.72964280914356	-0.366160494659893	0.605292005435309	0.828779064246991
Merged-chr17-45736870-4	chr17	45736792	45736992	+	883.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 1 of 4)	(CG)n|Simple_repeat|Simple_repeat	2386.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	4.62295518904726	3.82233110245742	4.02461627942122	3.95379671874679	4.30099547426353	4.09707857087103	4.27918919341064	3.9703557382218	0.0934969921481076	0.838825723983696	0.938853173799904
Merged-chr10-8518605-1	chr10	8518505	8518705	+	1000.0	f1_c57bl6.idr	5' UTR (NM_177387, exon 1 of 8)	5' UTR (NM_177387, exon 1 of 8)	220.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	5.24444886241638	5.08672189394993	5.56617055561668	5.21403345199883	4.87013036554008	5.25872830556372	5.02363840466225	5.32986392228288	-0.29699318909996	0.352113188078038	0.659311427742586
Merged-chr2-90543300-1	chr2	90543200	90543400	+	548.0	f0_balb.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	37347.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.54788062216543	3.37438005894345	3.49217647188481	3.5147667438656	3.76202348083365	3.82072591889979	3.42169609971324	3.7490168470892	0.68159626689314	0.160708095143036	0.448974916516709
Merged-chr7-88054418-4	chr7	88054307	88054507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081414, intron 8 of 9)	intron (NM_001081414, intron 8 of 9)	-223678.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.82912526391745	7.2179652816279	7.3029819551495	7.58870061716024	7.28141385609483	7.31425002685517	7.45770561449978	7.14373820529673	0.0348710746692101	0.874358106341111	0.952845802230489
Merged-chr11-100622924-4	chr11	100622827	100623027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028024)	promoter-TSS (NM_028024)	-28.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	6.86521706514362	6.8123972078496	6.73746117785812	6.42046760577356	7.20982505532293	7.05669060401795	7.21405113024347	6.86154826345294	0.549547944866983	0.0104457290043018	0.0815080623544392
Merged-chr19-7226727-4	chr19	7226611	7226811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027643, exon 8 of 8)	3' UTR (NM_027643, exon 8 of 8)	-9095.0	NM_007750	12868.0	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	6.88316768917791	6.71752439929936	6.65230657231167	6.73409635680636	6.31191264384302	6.25234912799123	6.33468222326906	6.72036224638827	-0.482426728819077	0.0292077030096148	0.164319877689011
Merged-chr9-59735865-4	chr9	59735743	59735943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001172071, exon 3 of 3)	3' UTR (NM_001172071, exon 3 of 3)	14806.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	5.87008435245238	6.20106125571916	6.30129082126499	6.11318741583509	5.98694017982634	5.9978599507566	6.16132016185571	6.00523451500454	-0.144613865058276	0.545879292255253	0.796010912204515
Merged-chr10-61135385-4	chr10	61135273	61135473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 2 of 14)	intron (NM_009163, intron 2 of 14)	12311.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	5.46226792523804	5.57838108182292	5.3427930094941	5.62224099750632	5.71847445845771	5.51912269113907	5.5451932986197	5.54270753603783	0.124392356994671	0.645496616722954	0.850934142345746
Merged-chr7-126628213-1	chr7	126628113	126628313	+	634.666687	f0_c57.idr	Intergenic	Intergenic	-2743.0	NM_019738	56312.0	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	3.50075884130393	3.61195771316852	3.66517507596458	3.23123009793393	3.79797494851019	3.73091890904401	3.59816120893237	3.66303543003215	0.651004272827313	0.188232771251674	0.486836249588419
Merged-chr12-17348344-4	chr12	17348248	17348448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008421)	promoter-TSS (NM_001008421)	-145.0	NM_001008421	217431.0	Mm.27536	NM_001008421	ENSMUSG00000061458	Nol10	Gm67	nucleolar protein 10	protein-coding	7.16838189676206	7.11148162571255	7.25769118709699	7.2135848654886	7.39679416788753	7.18918119705116	7.25281863841414	7.14159283250126	0.0898366046392076	0.621706512872581	0.837999133509723
Merged-chr3-105674816-4	chr3	105674702	105674902	+	874.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001039347)	TTS (NM_001039347)	12769.0	NM_017397	53975.0	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	4.09735085479805	4.11683524492823	4.24552994149132	4.36570300383354	4.65989637160178	4.41871891769406	4.35813475894777	4.37523116492161	0.574094012586682	0.141275538654616	0.418178694649094
Merged-chr4-121028883-4	chr4	121028782	121028982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10684.0	NM_007741	12840.0	Mm.269384	NM_007741	ENSMUSG00000028626	Col9a2	AI427499|Col9a-2	collagen, type IX, alpha 2	protein-coding	6.18610292556555	6.06947102342043	5.36653810752938	5.54813346211901	6.12078936572024	6.37892289013631	5.89297677674603	5.75042878915708	0.35969339722555	0.244562530678428	0.5557618752544
Merged-chr7-89445362-3	chr7	89445265	89445465	+	837.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	19059.0	NR_102276	101521.0	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	5.27409048382597	5.39860808337222	5.66113887517275	5.40486949926462	3.87026874134662	4.11103976894617	4.02621694210887	4.49085026227008	-2.95867635844939	8.8266276521604e-13	9.50484916267965e-11
Merged-chr9-123478575-8	chr9	123478484	123478684	+	945.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013860)	promoter-TSS (NM_013860)	-117.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	4.82973348335429	4.84058067623874	4.58160440094562	5.00141774252732	5.05470771664485	4.92814461865418	5.04562863192352	5.03549257292839	0.355103473267543	0.277398034839475	0.589523623498612
Merged-chr11-111444991-3	chr11	111444901	111445101	+	633.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	378837.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	2.78923054125914	3.15215465559076	3.11654970829449	3.07192700176575	3.15214246416334	3.10349967049384	3.16075124775851	3.11492633344233	0.360945298680227	0.530798531256226	0.786856644791047
Merged-chr14-17812637-1	chr14	17812537	17812737	+	692.0	f0_balb.idr	intron (NM_001113417, intron 1 of 9)	L1M5|LINE|L1	151677.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	3.46645338885491	3.56126832240263	3.6439430979349	3.87165222863997	3.85199509462094	4.0607662126966	3.51591693771088	3.79763714329871	0.474949591210137	0.340552606010743	0.649679556785898
Merged-chr12-79140984-4	chr12	79140876	79141076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	10188.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	7.82550282103037	8.07677754569464	7.76578449574389	7.86135688192151	7.55811387992745	7.79397582669499	7.45941007898889	7.60242690016113	-0.370495381831933	0.0358144910765706	0.187997025098762
Merged-chr3-65927915-4	chr3	65927813	65928013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30336.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	6.32514515314829	5.94312261944144	6.16573579554344	5.94861344410052	6.0417681466963	6.15690509490971	5.68361242034198	5.78749435792388	-0.25251177206109	0.331975192149615	0.643055455679069
Merged-chr7-89403262-2	chr7	89403166	89403366	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 1 of 14)	intron (NM_001360746, intron 1 of 14)	956.0	NM_001360746	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	3.67581111078875	4.25930698737523	3.78297628703884	3.57173378227888	3.73011569189165	3.79555679714019	3.60587297270576	3.72862188967856	-0.384259214926341	0.440284038921587	0.727741310566664
Merged-chr9-21411837-4	chr9	21411796	21411996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021888)	promoter-TSS (NM_021888)	59.0	NM_021888	60507.0	Mm.436579	NM_021888	ENSMUSG00000002825	Qtrt1	2610028E17Rik|Tgt	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding	6.506000565517	6.13534231063855	6.29836165149119	6.11063444342213	6.36249518851132	6.81816858674183	6.22785557717799	6.5184086618317	0.347158353604216	0.155842602152644	0.441705659838286
Merged-chr16-21694739-4	chr16	21694647	21694847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001881)	promoter-TSS (NM_001001881)	-82.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	7.48016246577732	7.74023898250493	8.08776910549104	7.46792871760753	7.47295947633029	7.47502467816918	7.570723447596	7.2585812984843	-0.347839729474642	0.0958096683229337	0.339032382876366
Merged-chr8-13677673-4	chr8	13677572	13677772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009025)	promoter-TSS (NM_009025)	-85.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	8.54059364615861	8.68277584480943	8.68333967940336	8.90105464269634	8.55008104679768	8.42723447731496	8.78199681871576	8.41532470518856	-0.202533809256479	0.229113239254201	0.538010661957944
Merged-chr12-16591690-4	chr12	16591588	16591788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355598, intron 1 of 20)	intron (NM_001355598, intron 1 of 20)	-1918.0	NM_172950	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	7.8841414466765	8.03378700163477	7.81007967300725	7.83994625810245	6.96816363272413	7.01408540508919	6.72031317506183	6.49863701268061	-1.44385724334439	4.93578973073723e-13	5.61397382744796e-11
Merged-chr4-63541245-4	chr4	63541159	63541359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3506.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	5.88239982411344	6.11056537003475	5.92837113565838	6.12280767853854	5.65224604384441	5.75219893089814	5.73438325435849	5.78435141895927	-0.483405376928045	0.0503374023711387	0.23278105271409
Merged-chr11-117775729-4	chr11	117775639	117775839	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_154387, exon 6 of 19)	non-coding (NR_154387, exon 6 of 19)	3909.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	5.78178619557539	5.58934712479152	5.69014978936436	5.9812425620104	5.42875005681832	4.72022960117462	5.20612515595696	5.75615115476647	-0.751584404543292	0.025574240145837	0.150840971108761
Merged-chr11-6391729-4	chr11	6391616	6391816	+	960.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3409.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	5.24130164031762	5.61735947825522	4.75846092927448	4.18783570515226	5.55985587329723	5.83383524753453	5.18445373691219	5.14176758588567	0.712957487131939	0.0984396123922859	0.343994301133918
Merged-chr5-136949740-4	chr5	136949606	136949806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3569.0	NM_001163243	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	6.31099486782601	6.56455063211974	6.13965070055346	6.0790657377598	6.43264876816137	6.25316459136096	6.16802406449642	5.67008081944953	-0.172605053372492	0.527050318441447	0.784096064657872
Merged-chr10-117320761-4	chr10	117320694	117320894	+	971.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27926.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	4.92281986467535	5.11051183301215	4.8197010522704	4.36432267564955	4.9347266904095	4.99252340963177	4.51779952107464	4.39367008749592	-0.174464044806058	0.663905463944916	0.860780365686037
Merged-chr3-142273428-4	chr3	142273353	142273553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190854, intron 8 of 12)	intron (NM_001190854, intron 8 of 12)	-104028.0	NM_001277216	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	5.42579347593065	5.22687420303563	5.06992690161214	5.27170918381494	5.79425031679722	5.38824202167228	5.69798547390766	5.30447169424433	0.558630789710671	0.0583185364283144	0.253856109615398
Merged-chr17-29008130-4	chr17	29008032	29008232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134115)	promoter-TSS (NM_134115)	-137.0	NM_001357173	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	7.65745616891391	8.06801337348249	7.51542097376194	7.34225970316061	7.95348542750674	7.91803078053847	7.67898582263537	7.50072120177737	0.140611594919759	0.52303340125989	0.782330362002462
Merged-chr16-24979620-2	chr16	24979520	24979720	+	574.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001145952, exon 12 of 12)	3' UTR (NM_001145952, exon 12 of 12)	-80019.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	3.1423874937977	3.04057984102864	3.14277170408274	3.72635715123317	2.96424846407302	2.98116417129551	3.19038873044165	3.3641216815893	-0.646161270001091	0.308929568403769	0.621307011454902
Merged-chr18-34506892-4	chr18	34506787	34506987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146084)	promoter-TSS (NM_146084)	-64.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	7.53520338115014	7.5564987465158	6.95667088026778	7.48022927384372	7.40014878800744	7.55203508567677	7.85997633706025	7.33871689505637	0.190350017210614	0.382514875390861	0.684560538944663
Merged-chr11-30781072-4	chr11	30780963	30781163	+	616.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134013, intron 1 of 46)	ID_B1|SINE|B4	9288.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	3.88273079746675	4.00380644179458	4.13199397668548	4.07682277333844	4.0205816767198	4.25707083379409	4.35684691902128	3.88112529084322	0.280768449236268	0.50909135408756	0.773889746553017
Merged-chr2-3668905-4	chr2	3668797	3668997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44561.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	7.43421920719329	7.33809626864514	7.46399383323916	7.64623114144681	7.41859554998573	7.29802511724277	7.5346660945068	7.28807451600484	-0.124764261054236	0.49572719166333	0.765874409085869
Merged-chr1-86492919-4	chr1	86492817	86493017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33640.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	5.96415596122455	6.23102020179402	6.2008911606633	6.59437939379713	6.06797184335369	5.99468136722013	6.26276513686275	6.32622896938783	-0.183506555360173	0.475738993336301	0.752519518360065
Merged-chr9-114639514-4	chr9	114639418	114639618	+	977.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153585, intron 1 of 19)	intron (NM_153585, intron 1 of 19)	682.0	NM_153585	78893.0	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	4.95243290190522	5.26261695275885	4.87522401744311	4.79436612634072	5.51725614943826	5.05484430453962	5.10475058394154	5.69945791587492	0.744150777542208	0.0261053927166876	0.152934629479926
Merged-chr16-26105552-6	chr16	26105466	26105666	+	763.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_173379, exon 1 of 15)	exon (NM_173379, exon 1 of 15)	218.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	3.5645917344399	3.38333562603659	3.34318386012641	3.66326276879272	3.32407086145315	3.39383937060676	3.27033017148306	3.75148048201432	-0.189657835424553	0.72221722953372	0.889145957666795
Merged-chr10-87842685-4	chr10	87842588	87842788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-15577.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	5.2975489750279	5.67497514195277	5.54015401175428	5.4305640469708	5.6703634445869	5.65942129057044	5.56584540517214	5.8721338681617	0.346766222326781	0.199137519375463	0.500933329503325
Merged-chr2-38643896-4	chr2	38643751	38643951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011187)	promoter-TSS (NM_011187)	55.0	NM_011187	19177.0	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	5.00104600587592	4.94254750900753	5.41581869230478	5.19545299695906	5.30838781906016	5.64041121527587	5.36127033878713	5.1737406705294	0.408884518321578	0.1856510300287	0.483574244399563
Merged-chr7-83859914-4	chr7	83859838	83860038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24403.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	7.12858785897196	6.68329472155446	7.47029750506144	7.20931653349948	6.6051483418202	6.52986403129107	7.23097688808757	6.77936117978002	-0.467398675760751	0.068191152196856	0.278776521866637
Merged-chr12-75735680-5	chr12	75735589	75735789	+	985.628601	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030750)	promoter-TSS (NM_030750)	40.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	6.1036216439251	5.85203473451029	5.69013311289087	6.06003467006181	6.08720782111301	6.06665143627875	5.99286470713751	5.7394271835718	0.0588515953130913	0.817374208723722	0.929835729412061
Merged-chr18-58660615-1	chr18	58660515	58660715	+	644.0	f1_balb.idr	intron (NM_025478, intron 1 of 4)	intron (NM_025478, intron 1 of 4)	1133.0	NM_025478	66307.0	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	2.73365204316686	2.992170149216	2.66634606471293	2.43917258995859	2.6003878867351	2.84262815855306	2.848491227389	2.91660599950444	0.40103807844302	0.55444479522156	0.800763454246316
Merged-chr14-73105577-4	chr14	73105467	73105667	+	842.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36943.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	4.47837705699653	4.28119569314156	4.24201617132818	4.34262434320222	4.05481142278752	3.89707126910732	4.08694088698	4.05263467962616	-0.798512937829811	0.0495916437216215	0.230617842855848
Merged-chr4-139382544-4	chr4	139382456	139382656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160319, intron 1 of 105)	intron (NM_001160319, intron 1 of 105)	1897.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	5.07643351385224	5.14014975578474	5.11217776132045	5.37968202272131	5.30964944666953	5.56129580902974	5.21714831961128	5.27003911859133	0.257875355707842	0.390555773426214	0.69058015678842
Merged-chr1-120170486-4	chr1	120170388	120170588	+	915.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172074, intron 4 of 4)	intron (NM_001172074, intron 4 of 4)	49301.0	NM_001172074	73103.0	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	4.07445083940477	3.87108601787089	4.75726709144922	4.84159808897145	4.30907454993727	3.83764368479131	4.25215578323461	4.43874924214603	-0.542870160833283	0.277663594522824	0.589700641340894
Merged-chr18-38239380-4	chr18	38239270	38239470	+	783.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027904, intron 1 of 1)	CpG	10828.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	4.24223333705088	4.10244043766162	3.79332101733495	4.29308912851916	3.96442930360949	4.08387734247689	4.41626647962434	4.01010631447164	-0.00981286881755573	0.982225547595324	0.99364466469049
Merged-chr17-6783174-4	chr17	6783101	6783301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009510)	promoter-TSS (NM_009510)	-421.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	5.79522673575589	5.50018904631293	6.03457082567048	5.65826234194553	5.20862569430757	5.25988274498682	5.16349906708731	5.3813343307986	-0.871071628855068	0.00268810938971534	0.029327612817578
Merged-chr3-38114626-4	chr3	38114510	38114710	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93509.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	5.62623113066449	6.51602533126128	5.70481711566245	5.09144440417145	5.89386904064467	5.77758636785316	5.54439090694698	5.18331531762109	-0.345863478456134	0.369494972733898	0.673692529630015
Merged-chr3-116845027-4	chr3	116844921	116845121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14546.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	6.45723784424784	6.3251193823718	6.24667103483929	6.02769165952872	6.24070858705628	6.42238425918118	6.17589558787872	6.33472418550233	0.0534002068181509	0.819677694000382	0.930954326263395
Merged-chr17-21008908-4	chr17	21008801	21009001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145483)	promoter-TSS (NM_145483)	-40.0	NM_145483	224585.0	Mm.296036	NM_145483	ENSMUSG00000067942	Zfp160	6720480D16Rik|F11|HKr18|HZF5|KR18|mKIAA1611|mszf47	zinc finger protein 160	protein-coding	7.31033551498358	6.97330848366403	7.24836012497829	7.51161765708494	7.24204064394662	7.09417838778123	7.4735616817406	7.23244523832548	-0.0219888082720743	0.915121255999892	0.968456502190284
Merged-chr1-118553244-3	chr1	118553143	118553343	+	636.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 30 of 39)	intron (NM_001359330, intron 30 of 39)	-74702.0	NM_023755	81879.0	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	3.23907719495091	2.96861206081828	3.1363911460399	3.14154826482459	2.63283483767425	2.7977171256735	2.89114935187283	2.89947753685232	-1.47947079225182	0.0213129224859084	0.133553350614004
Merged-chr14-27096951-4	chr14	27096862	27097062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134437, intron 11 of 12)	intron (NM_134437, intron 11 of 12)	-47031.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	5.25713195855684	5.18397114758315	5.37933526234813	5.17466997546763	5.33666986699534	5.52400116792832	5.53886417896567	5.45941485148652	0.390834331367965	0.161984473737169	0.451073622164155
Merged-chr2-84523638-4	chr2	84523564	84523764	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16791.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	5.05635525318663	5.24544469074458	4.87783252607621	4.84678625931214	5.35849505950322	5.05316316157119	5.12889044804844	5.05377862081163	0.301776316165963	0.343250457664203	0.65196062244377
Merged-chr10-80147987-4	chr10	80147891	80148091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021565)	promoter-TSS (NM_021565)	-281.0	NM_001305798	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	7.13300688949905	7.11154547215167	6.25684447178713	6.71763977230038	6.99925910458106	7.25387160589777	6.94579720176531	7.03729866950228	0.294647809599238	0.232670677435653	0.542304513255514
Merged-chr4-148591402-4	chr4	148591236	148591436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009272)	promoter-TSS (NM_009272)	-177.0	NM_009272	20810.0	Mm.10	NM_009272	ENSMUSG00000006442	Srm	AA407669|SpdST|SpdSy	spermidine synthase	protein-coding	7.76345796433849	7.95464104934985	7.59150476598749	7.89818863278698	8.04761110988497	7.98996799492362	8.27345923255895	7.98120630296827	0.339488726772103	0.0525219992609873	0.238803680123865
Merged-chr6-72955049-4	chr6	72954943	72955143	+	938.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3189.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	4.95975421195179	4.41240003362297	4.60226530521674	5.21716401141072	4.31829938313067	4.45720160405126	4.77159740529588	4.9572176778667	-0.439448936743118	0.293918007975169	0.606344613833264
Merged-chr6-54946738-4	chr6	54946666	54946866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 3 of 11)	ORR1G|LTR|ERVL-MaLR	24895.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	6.99019738837289	6.7646923191271	6.86341595706743	7.0240661266418	6.94736357829048	7.14285248566953	6.59302527736874	6.41031192398517	-0.155284276691561	0.505422966413372	0.771470037762552
Merged-chr10-99172256-4	chr10	99172150	99172350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	64115.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	6.84343124290066	6.56012118992885	7.68017264912742	7.81976428002879	6.65909954812353	6.40145782638844	7.07520034060445	6.68994267071161	-0.84132835547115	0.00714039676797596	0.0618078926848791
Merged-chr10-82814261-4	chr10	82814164	82814364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038042, intron 1 of 2)	intron (NR_038042, intron 1 of 2)	2141.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	5.50301832238966	6.1295832731624	6.22046056958932	6.53910721231822	6.54352721428179	5.96086023782289	6.51316729545693	6.67113374644886	0.427578173016568	0.1615724935172	0.450455074852563
Merged-chr11-74491330-4	chr11	74491232	74491432	+	975.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	MIRb|SINE|MIR	98826.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	4.82820026329868	5.23775780223222	4.94349930211815	5.09803919658884	5.25010867908561	5.04435930183518	5.18074544463634	4.90320259771325	0.122290708175631	0.700719149052999	0.879330200638978
Merged-chr16-11133643-3	chr16	11133528	11133728	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029582, intron 1 of 11)	L2a|LINE|L2	904.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	3.35068516157387	3.34326451921087	3.46717377316517	3.59426685468012	3.26365431072919	3.69059530121543	3.45369938691803	3.62161737825845	0.195756237928885	0.706827378596149	0.882258354066458
Merged-chr5-90694656-4	chr5	90694564	90694764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54137.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	7.51375260434543	6.95621875227102	7.81750157214034	7.74235745557075	7.05838408742279	6.94900455880941	7.01744263697892	7.14567339565692	-0.683720645995645	0.00307657380957399	0.032621398360147
Merged-chr1-171578010-1	chr1	171577910	171578110	+	542.0	f1_c57bl6.idr	intron (NM_018729, intron 5 of 8)	intron (NM_018729, intron 5 of 8)	18817.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	2.93187139286224	2.77843868586524	2.93225662494035	2.70952014678667	3.06310579081263	2.70612108779973	2.73591234896419	2.93069865524058	0.178140828963451	0.778143944526696	0.913566660130711
Merged-chr4-99716101-2	chr4	99716001	99716201	+	973.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081264, intron 1 of 14)	B1F2|SINE|Alu	471.0	NM_001081264	320438.0	Mm.32408	NM_001081264	ENSMUSG00000073792	Alg6	E230028F23Rik	asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)	protein-coding	4.11498660460421	3.73019198478496	4.11562855316599	3.75235679088698	4.08331234378018	4.04938001263453	4.13971132414335	3.87270645991797	0.310789753698591	0.481036179649395	0.756340723375945
Merged-chr2-130179376-4	chr2	130179318	130179518	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009225)	promoter-TSS (NM_009225)	-54.0	NM_009225	20638.0	Mm.88216	NM_009225	ENSMUSG00000027404	Snrpb	AL024368|AU018828|SM-B|SM11|SMB|SNRNP-B	small nuclear ribonucleoprotein B	protein-coding	5.25773107631094	5.34462254857287	4.7674623960529	4.85019280663096	5.3107329613031	5.24486518564677	4.86650679855423	5.19542028468224	0.186173975086934	0.581349489126075	0.816253350773532
Merged-chr17-65663909-4	chr17	65663802	65664002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 6 of 6)	intron (NM_133685, intron 6 of 6)	-21698.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	5.63673498412366	5.77793517182605	5.66428886086666	5.78203248730853	5.40038676803387	5.91563404575032	5.91551638646759	5.94169731388698	0.125793552284532	0.646379725109456	0.851302848618114
Merged-chr10-30811098-4	chr10	30810999	30811199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7773.0	NM_001358842	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	6.99968910226821	6.61611834094638	6.33850057060154	6.43358434170842	6.8583046536986	6.71206112092095	6.38090880439897	6.49722997292574	0.0245568456442232	0.921054099612351	0.970765980932679
Merged-chr3-135630144-4	chr3	135630053	135630253	+	963.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 6 of 24)	intron (NM_008689, intron 6 of 24)	61394.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	5.06322202070082	5.09496771918043	5.28642634152034	5.20433785696793	4.89258761415267	4.88983469214166	5.69444800689062	5.1606044115708	0.0638456172361453	0.852677220431852	0.944604243807489
Merged-chr2-167357078-4	chr2	167356972	167357172	+	767.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7894.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	3.8342093504385	3.89472025815667	3.61511568403947	3.79174809048156	4.12242079868592	3.90255721073536	3.8679061415339	3.72752009221486	0.375390696399994	0.405535525637823	0.702341680428793
Merged-chr15-27671818-4	chr15	27671734	27671934	+	970.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	9708.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	4.71255058474516	4.64482138005532	5.02395589271909	4.75470429585568	4.73423995483351	4.99720574881474	4.61139196240081	4.67056357380709	-0.0597897141910524	0.862327043016217	0.948096537565529
Merged-chr2-103655828-4	chr2	103655710	103655910	+	957.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	89500.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	4.92785139656558	5.03291067704138	4.9621176941517	5.24042960665841	4.64519448522186	4.41366130890933	4.79975468442917	4.62092603130077	-0.886914586348914	0.00979230494900575	0.0777128413385305
Merged-chr13-41520988-4	chr13	41520895	41521095	+	884.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33635.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	4.12069785308578	4.70707516599286	4.53577935456443	4.91713544511444	4.2304462588337	4.30152542373969	4.34824709413497	4.49286826387042	-0.632275720982814	0.124935091590298	0.392282408758083
Merged-chr19-53403951-4	chr19	53403890	53404090	+	923.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-13356.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	4.6617426652378	4.74718019437505	5.22693191419935	4.8384155393365	4.50537930133545	4.91223781707686	4.28186997498684	4.24449009324771	-0.798209730762739	0.0440199561058194	0.213876891171066
Merged-chr17-32947444-4	chr17	32947369	32947569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130882)	promoter-TSS (NM_130882)	-108.0	NM_130882	170716.0	Mm.254838	NM_130882	ENSMUSG00000024055	Cyp4f13	0610030I10Rik|Cypf13	cytochrome P450, family 4, subfamily f, polypeptide 13	protein-coding	7.4178205774973	7.18028525860122	6.82823278188021	7.17870650720423	7.14644981147182	7.13229098304561	7.4450666890078	6.90911466754126	0.00540508905272301	0.980104266442036	0.992782655212549
Merged-chr3-84654294-4	chr3	84654205	84654405	+	806.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11887.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	3.51114951122425	3.77832802968013	3.7948129302718	3.73281994477268	3.65615441088151	3.91505318510136	3.87590527440003	4.02438438313311	0.456757493073401	0.321024695463993	0.632777181424816
Merged-chr11-60844862-4	chr11	60844770	60844970	+	857.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172112, intron 2 of 6)	intron (NM_001172112, intron 2 of 6)	14239.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	3.81002128678091	3.79349031607084	3.32457622525209	3.75618343040014	4.12162518504203	3.82360784567128	3.9371732907545	3.90608185836341	0.758914139900267	0.112273302255166	0.370388458528943
Merged-chr6-145863583-6	chr6	145863409	145863609	+	914.763916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024469, exon 5 of 5)	exon (NM_024469, exon 5 of 5)	1911.0	NM_024469	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	3.00095961679791	2.89435397638706	3.49245049843133	3.24403691703295	2.60136071646936	2.84578394463423	2.57731031008601	2.80675157793621	-2.27520957872278	0.00178112264661383	0.0213791785604259
Merged-chr15-77837893-4	chr15	77837796	77837996	+	894.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	4279.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	4.00885904645122	4.31924290756826	4.11019338609682	4.00436975275865	4.49731941267305	4.28333850649854	4.22896706604118	4.0584185947784	0.433496472431206	0.290526563191912	0.602739521450264
Merged-chr18-88774303-3	chr18	88774195	88774395	+	880.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119912.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	3.51303276050465	3.12570314266051	3.28234780500013	3.60970676254808	3.70285052495865	3.45712840562801	3.44610993287589	3.56330168021904	0.470396615951783	0.382201411550962	0.684281815592715
Merged-chr4-41349003-4	chr4	41348923	41349123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290454)	promoter-TSS (NM_001290454)	27.0	NM_023305	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	7.22001946882475	7.27775625999831	7.09285985295189	6.96477607869625	7.41729435626627	7.50439829218692	7.32117479493849	7.45752092556038	0.39288738829331	0.0331740242396375	0.178913007376357
Merged-chr1-86394482-4	chr1	86394388	86394588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5127.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	6.50129335950761	6.30935574975876	6.53368045229026	6.55922817407006	6.26010619162075	5.89798475336104	6.20746912630845	6.23493363877599	-0.475725580763634	0.0375837685391331	0.193726921634221
Merged-chr2-158144927-1	chr2	158144827	158145027	+	1000.0	f0_balb.idr	intron (NM_009373, intron 1 of 12)	intron (NM_009373, intron 1 of 12)	1465.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	5.05070813728346	5.14189217020442	5.20661726369568	4.59335578096375	4.95028398751443	4.80624077636803	5.20918571845159	5.04810518632347	0.0188058735159805	0.95695761586447	0.984757116793997
Merged-chr11-70005713-2	chr11	70005613	70005813	+	750.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007888, exon 5 of 15)	exon (NM_007888, exon 5 of 15)	5087.0	NM_007888	13543.0	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	3.00424780025011	2.79033025220373	2.9372965045425	2.82677501731175	3.19630075922654	3.30264809892544	3.33432990889648	3.39655472370801	1.69620694714358	0.00263114800186488	0.0288570853042743
Merged-chr4-156164590-2	chr4	156164490	156164690	+	659.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021604)	TTS (NM_021604)	32898.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	3.37768936012512	3.15337648210532	3.26609086199635	3.41164976720553	3.19813460144337	2.88585767804547	3.72897557313605	3.20461219718068	-0.0561373344260101	0.927349102681644	0.973437269072031
Merged-chr4-155892246-4	chr4	155892189	155892389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033490)	promoter-TSS (NM_001033490)	414.0	NM_207223	140500.0	Mm.219591	NM_207223	ENSMUSG00000029033	Acap3	Centb5|Kiaa1716-hp|mKIAA1716	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding	5.75229684914879	5.54513701737643	5.38081155776773	5.43721369095723	5.87814916229868	5.52668728753529	5.76889699264078	5.17711529413039	0.162387807143295	0.587695183420845	0.819326924567384
Merged-chr1-151422376-4	chr1	151422283	151422483	+	687.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025819, intron 2 of 19)	intron (NM_025819, intron 2 of 19)	6052.0	NM_025819	66875.0	Mm.290905	NM_025819	ENSMUSG00000052748	Swt1	1200016B10Rik|C1orf26	SWT1 RNA endoribonuclease homolog (S. cerevisiae)	protein-coding	3.86488621936977	3.92408179878709	3.81404078096125	3.81226653976456	4.06870642534897	3.82293710386457	3.89836233161272	3.91254797515133	0.23692839238291	0.58317312669857	0.816930593489739
Merged-chr13-90967672-3	chr13	90967579	90967779	+	708.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 5 of 7)	intron (NM_025770, intron 5 of 7)	44557.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	3.89037569845729	3.5496658840791	3.89096821516618	3.62999861618195	3.55730146637489	3.55683501477819	4.23968789831023	3.93540963204989	0.317048967813022	0.529408880532065	0.785614700149936
Merged-chr11-68904897-1	chr11	68904797	68904997	+	772.5	f1_c57bl6.idr	TTS (NR_003373)	TTS (NR_003373)	3308.0	NR_003373	100034726.0	Mm.3229	NR_003373	ENSMUSG00000062353	Gm15772	-	ribosomal protein L26 pseudogene	pseudo	2.88078507811796	2.61295475402906	2.81777738552198	2.69848865006895	2.89590532712338	2.92584720718298	3.04162158474692	2.99760225871995	0.965744006181213	0.110964638942155	0.368049955044906
Merged-chr3-19188226-4	chr3	19188133	19188333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356295)	promoter-TSS (NM_001356295)	-62.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	8.12354964123765	8.07463975841125	8.24065699443809	8.4711326506843	8.2576806024126	8.1890252654863	8.60511393287655	8.08717106656903	0.0724120072141492	0.700112117585242	0.879044875360757
Merged-chr7-28344919-2	chr7	28344819	28345019	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-5770.0	NM_013647	20055.0	Mm.702	NM_013647	ENSMUSG00000037563	Rps16	AA420385|AI317031	ribosomal protein S16	protein-coding	2.85835462862328	3.1792616223904	3.05151068585198	2.71033533439649	2.77805433360876	3.10201981021575	2.97937918401716	3.31834642574763	0.405622418124528	0.521847302602331	0.781694708361701
Merged-chr8-108759920-4	chr8	108759836	108760036	+	917.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	45292.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	4.13272271560347	3.96580659079838	4.17993644338239	3.98187753904028	4.33138798209214	4.70304759988804	4.16124368515339	3.74935201449268	0.54002766586915	0.233521689312133	0.54319739619439
Merged-chr18-20750073-4	chr18	20749979	20750179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3675.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	6.64406534867072	6.41460727343113	6.88011340614119	7.00144763068088	6.46983486881586	6.18807082292079	6.95317726249373	6.25229686742805	-0.36925244701714	0.16460215606052	0.45485234168206
Merged-chr11-54145090-2	chr11	54144990	54145190	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44166.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	2.933899186626	3.33004027432113	2.86432576010138	2.79440554709646	3.19007617625836	3.11118138284802	3.27620650021282	3.2355108158036	0.833853796154742	0.162978668949181	0.452549687022461
Merged-chr10-7936720-4	chr10	7936630	7936830	+	955.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138667, intron 1 of 6)	intron (NM_138667, intron 1 of 6)	16335.0	NM_001359534	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	4.95132025863753	4.96822969030351	4.6236473696537	4.96492177464714	5.03463048908112	4.4242901768287	4.47260103084659	4.57844092560952	-0.454581614554978	0.229322843216234	0.538250038161589
Merged-chr13-81134573-4	chr13	81134467	81134667	+	758.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	RMER10A|LTR|ERVL	170493.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	3.99865384606723	3.8714560456629	3.75785997760704	3.79050617799021	3.5442273474957	3.93063219452018	3.57504859640103	3.99674688633961	-0.245909606075034	0.603018422182509	0.827895617176754
Merged-chr13-58288024-4	chr13	58287931	58288131	+	990.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360894, exon 15 of 15)	exon (NM_001360894, exon 15 of 15)	-13843.0	NM_019832	56278.0	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	4.81223901596592	5.14232143232876	4.6904285966016	4.85947032549139	4.78346311917522	4.98876182517633	5.18550786039352	5.17920529674475	0.29035610806563	0.385385131519473	0.686727457164216
Merged-chr16-57130973-4	chr16	57130879	57131079	+	826.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138599, intron 1 of 11)	intron (NM_138599, intron 1 of 11)	9265.0	NM_138599	28185.0	Mm.196933	NM_138599	ENSMUSG00000022752	Tomm70a	2610044B22Rik|D16Ium22|D16Ium22e|D16Wsu109e|Tom70|Tomm70|mKIAA0719	translocase of outer mitochondrial membrane 70A	protein-coding	3.52788351164211	3.55034393884643	3.46974229285557	3.84672058700139	4.00582402579414	3.38903724654681	3.77059394894152	3.52651116795704	0.260608771554645	0.621796778741467	0.838014028743114
Merged-chr8-105858702-4	chr8	105858599	105858799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1834.0	NM_026532	68051.0	Mm.455474	NM_026532	ENSMUSG00000008450	Nutf2	2700067I02Rik|AI115459|AI413596|AW546000|Ntf2|Ntf3|PP15	nuclear transport factor 2	protein-coding	6.92912177925886	6.93515053022047	6.24244566691754	6.69918087037321	6.56215498542163	6.54219242859683	6.7929999289171	6.75419499947632	-0.0944060502657255	0.689408523392791	0.873374315426894
Merged-chr3-107940090-2	chr3	107939990	107940190	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008184, intron 7 of 7)	intron (NM_008184, intron 7 of 7)	3659.0	NM_008184	14867.0	Mm.458154	NM_008184	ENSMUSG00000068762	Gstm6	-	glutathione S-transferase, mu 6	protein-coding	3.2033883873843	2.70470579695641	3.09538232339479	2.92485071339178	2.76863930112627	3.02296081505505	3.0258682384114	3.09364447179061	-0.044413624770817	0.943329093594177	0.97953264729624
Merged-chr4-138207094-4	chr4	138207006	138207206	+	904.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172703)	TTS (NM_172703)	-9506.0	NM_001122896	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	5.90696822074065	5.87072993359201	5.49831644112295	5.63585200518706	4.77477423689276	4.4836715707305	4.78163801908362	4.61542035859048	-2.00797157656469	1.66418038785846e-09	1.02647050110379e-07
Merged-chr7-88185356-3	chr7	88185282	88185482	+	701.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92703.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	3.99020248928331	3.59186688165207	3.83807201504568	4.85388406371958	3.57513875775709	3.72400003770494	3.97313684189919	3.88867851585849	-1.01267376082624	0.0721399114669313	0.288571808379493
Merged-chr15-71917871-1	chr15	71917771	71917971	+	702.0	f0_balb.idr	intron (NM_027174, intron 23 of 63)	intron (NM_027174, intron 23 of 63)	116356.0	NM_027174	69700.0	Mm.322500	NM_027174	ENSMUSG00000079022	Col22a1	2310067L16Rik|C80743	collagen, type XXII, alpha 1	protein-coding	3.03602058363299	3.13335481365183	3.40760214659137	3.24217144241893	2.74274875131763	2.71091922972598	3.14148651023722	3.03487850125043	-1.24923886977255	0.0538641511204221	0.24225934617721
Merged-chr11-77185185-3	chr11	77185081	77185281	+	967.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176965, intron 1 of 17)	intron (NM_176965, intron 1 of 17)	3787.0	NM_176965	319634.0	Mm.108786	NM_176965	ENSMUSG00000050944	Efcab5	4930563A03Rik	EF-hand calcium binding domain 5	protein-coding	4.08419829819763	4.61469506668965	4.38278736731101	4.35118539040298	3.33287640379022	3.88442229863988	3.86210769056367	4.08229438543126	-1.52439615705701	0.00234374180531006	0.0264295912196703
Merged-chr15-76309689-4	chr15	76309599	76309799	+	941.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2454.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	4.70084983431968	4.5931035587975	4.45862293791409	4.50409574272765	4.69268316693319	4.75826079813037	4.60412855130213	4.58292591792682	0.218421788147613	0.527810346843392	0.784574591591773
Merged-chr10-96279279-3	chr10	96279166	96279366	+	730.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53059.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	3.94121304785835	4.24053485068896	4.13195590242952	3.70168068274965	4.16401351006005	4.38574838269832	3.76399365581194	3.71742128635802	0.068265412560215	0.88756831511	0.957799052224803
Merged-chr2-129310848-4	chr2	129310886	129311086	+	931.142822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1014.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	3.95950807474214	3.50851431897623	3.55025750215719	3.92638856601797	3.21309764474294	3.22043574659669	3.17098985684373	3.54823598717325	-1.59587278663775	0.00447175233872577	0.0437458575753384
Merged-chr7-80144022-4	chr7	80143933	80144133	+	830.354126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28683.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	4.53828910295101	4.51050247443601	4.41561739868652	4.61827032629944	4.25992027582086	4.30602596219327	4.51794720480033	4.53607130108492	-0.287767640822082	0.436983833649104	0.725408654678613
Merged-chr2-34826213-4	chr2	34826120	34826320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013890)	promoter-TSS (NM_013890)	15.0	NM_001164770	30050.0	Mm.4465	NM_013890	ENSMUSG00000035949	Fbxw2	2700071L08Rik|FBW2|Fwd2|MD6	F-box and WD-40 domain protein 2	protein-coding	6.4066958214833	6.84415072809563	6.5512863910202	6.64007423961323	7.1346698193717	6.9163444292314	6.8300024423579	6.74962722840494	0.421436345012595	0.0513358024210502	0.23522795677404
Merged-chr15-90420953-3	chr15	90420835	90421035	+	785.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	67225.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	3.01850281870399	3.19294378684017	3.08400670868935	3.29033376015589	3.14296907363061	3.25663495289974	3.13506073376155	3.4642284290009	0.350078919135062	0.533518354319031	0.788779803917926
Merged-chr8-71521830-4	chr8	71521733	71521933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10064.0	NM_032398	84094.0	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	6.98609891879571	7.15376398170208	6.67365219299424	6.73567994247894	7.12594548446991	7.03147308595903	7.14924011258455	7.1139386772754	0.291632608902341	0.153713149122705	0.438569115642303
Merged-chr7-92637506-2	chr7	92637409	92637609	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028665)	promoter-TSS (NM_028665)	-367.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	4.20385012015453	4.54735522966092	4.30085266543885	4.25879634836262	4.57434480196111	4.51976419186492	4.41306103854527	4.55013254138288	0.430493245470104	0.245390337307046	0.556475048399969
Merged-chr18-79294976-1	chr18	79294876	79295076	+	565.0	f0_balb.idr	Intergenic	Intergenic	-185585.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	3.27360352698185	3.19091805640804	3.16807791519604	3.2272578103998	3.02351976448779	2.89022863735993	2.98057492664819	2.85580380341839	-1.14905531809021	0.0531942308623745	0.240538222384407
Merged-chr5-45580559-3	chr5	45580475	45580675	+	900.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021416, exon 5 of 16)	exon (NM_021416, exon 5 of 16)	-58700.0	NR_102378	319251.0	Mm.402857	NR_102378	ENSMUSG00000097825	9630001P10Rik	-	RIKEN cDNA 9630001P10 gene	ncRNA	3.2730004671207	3.19627941335115	3.42476091259346	3.25808311584673	2.84605057337698	2.93856850826842	3.14961297031553	3.03749571560575	-1.22214257983987	0.0389905624106758	0.19839225404457
Merged-chr15-36938735-4	chr15	36938645	36938845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	68657.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	5.48547626865908	5.67765619232342	5.99983531631914	5.46410955806761	5.40142251521712	5.66228930589516	5.40045801224256	5.66959066693191	-0.219977173162595	0.446453972395739	0.732131028709972
Merged-chr10-96379229-4	chr10	96379144	96379344	+	971.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153037.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	5.31824531908967	5.19820314052667	5.62050580229201	5.36315713164087	5.12359220224406	4.80305647784614	4.89869670323866	5.02998350178464	-0.752211987471724	0.0166511075109361	0.112963132054987
Merged-chr11-60803887-3	chr11	60803800	60804000	+	612.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009171, intron 3 of 11)	PB1|SINE|Alu	7365.0	NM_009171	20425.0	Mm.364956	NM_009171	ENSMUSG00000020534	Shmt1	AI324848|AI385541|C81125|Shmt|mshmt|mshmt1|mshmt2	serine hydroxymethyltransferase 1 (soluble)	protein-coding	3.42597098927782	3.57090440780599	3.36753709979579	2.71119129526058	3.63580524318003	3.70975227914588	3.23006657554137	3.68447265746055	0.869553211115513	0.1683112824519	0.460335399563643
Merged-chr6-82997913-4	chr6	82997811	82998011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	intron (NM_033079, intron 4 of 9)	35560.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	6.39031015528045	6.51116399887341	6.49617189730612	6.91648452860441	6.52743508074685	6.53097881513134	6.18695076466085	6.72056557511165	-0.158144329464721	0.518386856016782	0.779480280212488
Merged-chr11-89021079-4	chr11	89020974	89021174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009546)	TTS (NM_009546)	21671.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	8.56788863665801	8.42972552426251	8.57393229233483	8.35650908418163	8.62440053428602	8.78873243228175	8.72053493688316	8.51104902686393	0.231604023819554	0.134725968368137	0.40859681762081
Merged-chr19-34640797-4	chr19	34640716	34640916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008331)	promoter-TSS (NM_008331)	-73.0	NM_053217	112419.0	Mm.440727	NM_053217	ENSMUSG00000067297	Ifit1bl2	2010002M12Rik|AW412491|Ifit1b	interferon induced protein with tetratricopeptide repeats 1B like 2	protein-coding	6.62650470937818	6.51475726395828	6.30004060276552	6.79459228001025	6.80057657248998	6.65932470202057	6.28727870963296	6.39027155044242	-0.0363934192220694	0.879880264424862	0.95501604692809
Merged-chr15-62032323-3	chr15	62032222	62032422	+	649.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5664.0	NR_132747	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	3.58693546526548	3.66772890920405	3.15404513729952	3.89777467147754	3.62535538946691	3.64901852777808	3.51996222280703	3.41695001463839	-0.187495075958623	0.733393982617806	0.894469888645001
Merged-chr13-107101770-4	chr13	107101671	107101871	+	970.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79201.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	5.40655313657881	5.74337340570654	5.46801598736316	5.46972335575492	5.92275443038439	5.83458872330183	6.07314380952493	5.05051612807875	0.41786302842162	0.19296654362341	0.493056707199857
Merged-chr10-34283958-2	chr10	34283856	34284056	+	712.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009433, exon 1 of 1)	3' UTR (NM_009433, exon 1 of 1)	1766.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	2.97707309638111	3.12154958890484	3.03804851674727	2.7713236069691	2.80855385109354	3.08792067319525	2.83837361660126	3.20247975147043	0.0598813709501493	0.922551328497117	0.971307305090866
Merged-chr9-40802254-3	chr9	40802153	40802353	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031165, intron 2 of 8)	intron (NM_031165, intron 2 of 8)	980.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	5.74064208271125	6.43508169860823	4.55791896739648	4.92776580406498	5.48041928917418	6.18219844682679	4.87679573608256	5.06064071584763	-0.201859702021004	0.81272149650354	0.927656717651261
Merged-chr8-57427369-1	chr8	57427269	57427469	+	546.0	f0_balb.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-28554.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	2.69214010017845	2.48378984760825	2.6925580507976	2.57903906515436	2.2153035765532	2.26491331326411	2.23760668867873	2.16352673633079	-2.74962381141266	0.00201581334787037	0.0235218980800106
Merged-chr17-87397326-4	chr17	87397231	87397431	+	972.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029298, intron 5 of 6)	intron (NM_029298, intron 5 of 6)	30410.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	5.61200161625761	5.16117852714253	6.18083598226059	6.10255330337392	5.49892336971047	4.98028086551416	5.63616432852958	5.89322161142231	-0.476280289816276	0.191374672888331	0.49080704458508
Merged-chr7-80754230-4	chr7	80754115	80754315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 11 of 37)	intron (NM_016721, intron 11 of 37)	49116.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	6.79266950678345	6.16667758067122	6.63019473655893	6.96382039724875	5.94638438049129	5.88900352711732	6.2079850242301	6.38527217686503	-0.832355913307133	0.00204592580585217	0.0237942008213286
Merged-chr10-9908131-4	chr10	9908041	9908241	+	967.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7101.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	5.06663192662383	4.8358924452032	5.18742193748686	5.38906351864763	4.97382770228978	4.75506337451722	4.83978245315577	4.20415287039533	-0.817066708470195	0.0330298693036688	0.17830957719513
Merged-chr15-96566324-4	chr15	96566230	96566430	+	997.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75632.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	5.32958371193265	5.03134537052495	4.91721230702868	5.10035853790791	4.66389894662452	4.78096745003137	4.85824441614246	4.30105077212614	-0.885630845956744	0.0120063189844673	0.0899860776029692
Merged-chr10-4093008-4	chr10	4092901	4093101	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 24 of 27)	intron (NM_001170785, intron 24 of 27)	119926.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	5.68439273785699	5.31636735797299	6.17207220662109	6.5616839553995	4.79727096736222	4.99094145826964	4.90861647606483	4.65023429673591	-2.12478607623513	1.63209240016703e-08	8.32168373578003e-07
Merged-chr10-12963592-4	chr10	12963470	12963670	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029075, intron 1 of 2)	intron (NM_029075, intron 1 of 2)	689.0	NM_029075	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	5.79362859358158	5.63988401065329	5.60283105617162	5.30759649896637	5.74375711675002	5.7508424724262	5.38021772737583	5.17261479214538	-0.0730844854000197	0.81038441313097	0.92679579587174
Merged-chr4-8515671-4	chr4	8515559	8515759	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19985.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	4.82974525176272	5.16726768777895	5.03970467877993	5.26410401330014	4.50374179731058	4.84716604369429	4.76961077611947	4.90085803056031	-0.696090456641142	0.0407907011855961	0.204194480602683
Merged-chr2-34800620-4	chr2	34800534	34800734	+	944.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145522)	promoter-TSS (NM_145522)	-722.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	5.0104495894059	5.11800078849591	4.4562053616135	4.74690819925973	4.91950269115457	4.93814418567253	4.66110317778065	5.03958602491685	0.0854250514232815	0.809922847039929	0.92673441581447
Merged-chr18-4236433-3	chr18	4236321	4236521	+	849.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70589.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	3.68899045250881	3.79322237538286	3.40387481905775	3.38796527925823	3.58885941085783	3.85973219195996	3.77161399367586	3.58062498082628	0.401704236937348	0.415503967685753	0.709763938666409
Merged-chr8-75155071-4	chr8	75154974	75155174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45565.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	6.07079781821412	6.38027582415145	7.17497625898117	7.06229739145013	6.4714920992855	6.36509831016923	6.74770132702943	6.36321224728545	-0.377224290269129	0.203388824535495	0.506170662223812
Merged-chr3-79936331-1	chr3	79936231	79936431	+	789.599976	f0_balb.idr	intron (NM_133187, intron 2 of 3)	intron (NM_133187, intron 2 of 3)	50401.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	3.87385551826841	3.92449937608259	4.49954364637343	4.33630792974178	3.18242372789353	3.65228582644021	3.38369244718336	3.76720598639615	-2.08806637636154	0.000168478515921845	0.00315250585825474
Merged-chr19-3980535-4	chr19	3980457	3980657	+	950.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177438, intron 8 of 9)	intron (NM_001177438, intron 8 of 9)	-6013.0	NM_001302479	71670.0	Mm.29735	NM_027857	ENSMUSG00000024866	Acy3	0610006H10Rik|AA3|AAIII|AW107362|Acy-3|HCBP1	aspartoacylase (aminoacylase) 3	protein-coding	4.73735916323337	4.59287671588565	4.36533804909592	4.45194234197326	4.57904775202289	4.75847580780572	4.78465876980651	4.62248812277926	0.320728758031916	0.363642445285118	0.668649715510373
Merged-chr11-11689095-4	chr11	11688995	11689195	+	968.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025597, intron 1 of 7)	intron (NM_001025597, intron 1 of 7)	-1082.0	NM_001301865	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	5.29045599029322	4.88392428799118	5.1166440960385	5.35312521862345	4.91666866710979	4.66729916976895	4.96091435600914	4.83494258127678	-0.641569189778921	0.0521343152202957	0.23770856595128
Merged-chr5-41554460-1	chr5	41554360	41554560	+	597.333313	f0_c57.idr	Intergenic	Lx7|LINE|L1	153231.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	3.15106413728573	2.92849719479183	2.85781879216784	2.99103431926771	3.55284108490467	3.56677641522005	3.58106000099716	3.72949313342844	2.26723120469845	5.77648077573641e-05	0.00128048621967033
Merged-chr14-77836925-4	chr14	77836793	77836993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025384, intron 5 of 5)	intron (NM_025384, intron 5 of 5)	-37925.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	7.13241702840101	6.98305699147837	7.5207746497281	7.58212945792787	7.15631262246825	7.48837446501284	7.32556434508807	7.19827168476843	-0.0588435783010119	0.786406497973554	0.916926763301385
Merged-chr14-26994425-4	chr14	26994367	26994567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5895.0	NM_010420	15209.0	Mm.4802	NM_010420	ENSMUSG00000040726	Hesx1	HES-1|Rpx	homeobox gene expressed in ES cells	protein-coding	5.05166995522374	4.69807193639658	5.1473452149551	5.1447812595187	5.03407488405634	4.80848637385531	5.02790494611364	5.11300703459888	-0.048612498617051	0.881442670625209	0.955384724180766
Merged-chr8-84872845-2	chr8	84872743	84872943	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_031759, intron 2 of 3)	CpG	585.0	NM_001168244	71846.0	Mm.229128	NM_027954	ENSMUSG00000003824	Syce2	1700013H19Rik|AA407907|Cesc1	synaptonemal complex central element protein 2	protein-coding	3.30123613364402	3.13237762003863	3.45959502973623	3.06785372421773	3.3300864146032	3.41551766454903	3.04637164201992	3.24269747297889	0.100565008440566	0.857323934945197	0.946273938640331
Merged-chr15-58705518-4	chr15	58705458	58705658	+	982.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117869.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	4.93895777077119	4.49872637397904	4.80959657296989	4.85765483592169	4.68918195157786	4.48622451239148	4.4773172751162	4.65966508983638	-0.432956175199813	0.224933876399513	0.53334646858495
Merged-chr1-181138889-3	chr1	181138778	181138978	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026171, intron 4 of 22)	intron (NM_026171, intron 4 of 22)	5326.0	NM_026171	67459.0	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	3.32746613983913	3.1572979922246	3.25190459697257	3.36219790912376	4.67724984727376	3.72317849189493	4.16500529461952	4.3317832746524	2.9051348594668	4.4496591091149e-07	1.66608251303361e-05
Merged-chr19-44332456-4	chr19	44332340	44332540	+	978.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183216)	promoter-TSS (NM_183216)	-886.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	4.86563770215475	4.84520169615378	5.22700185088671	4.67382361545514	5.24306228159849	4.92540838465223	4.843350811357	5.25148236595271	0.356684781006693	0.295049646616952	0.607132847913763
Merged-chr7-110910667-3	chr7	110910543	110910743	+	781.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194464, intron 10 of 20)	HAL1b|LINE|L1	5658.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	3.12043620925277	3.01971028512356	3.34350993025378	3.60318615996971	2.982183884206	3.03236396289794	2.98411416734191	3.23524793500335	-0.949424576706873	0.120021907092512	0.383525895620107
Merged-chr6-46450532-4	chr6	46450420	46450620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 12 of 23)	intron (NM_001004357, intron 12 of 23)	-793876.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	7.0044635023379	6.28588800655475	6.95685718278098	7.5188984109904	6.51095635377352	6.54330189313209	6.93387367376594	6.70518471111885	-0.481907173612358	0.0918736842971881	0.331485159626861
Merged-chr14-73143336-6	chr14	73143223	73143423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033185, intron 1 of 15)	CpG	538.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	7.83779260496929	8.20038088990751	7.95890452242192	7.74506696450324	8.31152225232757	8.52617341405875	8.44259436767623	7.93196969659102	0.483585269523663	0.0139285694868496	0.0996744931424141
Merged-chr10-44604933-4	chr10	44604771	44604971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146123.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	5.55781763206579	5.32248312666901	5.89792776573638	5.8853062941044	5.35939935968417	5.19821338460821	5.17559310353927	5.19741794612262	-0.797719045556939	0.0082722698345631	0.0687222099153089
Merged-chr11-69901684-4	chr11	69901595	69901795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316696)	promoter-TSS (NM_001316696)	-121.0	NM_001291118	216860.0	Mm.268347	NM_001013414	ENSMUSG00000047284	Neurl4	-	neuralized E3 ubiquitin protein ligase 4	protein-coding	6.63531966281909	6.9003445687403	6.48629971843572	6.12611083536106	6.91942644902139	7.080493348149	6.69318435429336	6.91238599453099	0.502077641044668	0.040588120486699	0.203608160496785
Merged-chr17-70829801-4	chr17	70829718	70829918	+	976.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER45B|DNA|hAT-Tip100	16959.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	4.9694488438701	4.83723141579837	4.5769242512156	4.94210234536748	4.68134242162989	5.03829355297925	5.01155523883863	5.2120338758529	0.283221924202447	0.408633169911068	0.704424201942901
Merged-chr4-141444665-4	chr4	141444554	141444754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009541)	promoter-TSS (NM_009541)	-19.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	5.68653948801436	5.92883537396299	5.81500350403472	5.52090961409774	6.39923964297867	5.89098448386347	5.98553216872622	5.78639579359991	0.506107495731143	0.067464187416608	0.277189644200343
Merged-chr11-21237882-3	chr11	21237754	21237954	+	889.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1178.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	3.44888794863576	3.22203228598087	3.39204078005495	3.17352430381803	3.72058588934556	3.50747647578097	3.3792769624998	3.74560676887781	1.01055066793453	0.0478895631840489	0.225698948412727
Merged-chr8-84235743-4	chr8	84235641	84235841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172503, intron 1 of 13)	intron (NM_172503, intron 1 of 13)	1301.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	4.81095826507333	4.88086919493178	4.35472556313662	4.46466531623419	5.05403644884525	4.53461363164123	4.75342930756793	4.57966594325539	0.251934751101367	0.508561491903684	0.773537739427407
Merged-chr2-90478311-4	chr2	90478213	90478413	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	L1MB5|LINE|L1	861.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	5.52207139697486	5.23949565542196	5.39376077730452	5.56182048518302	5.24592763400381	5.22854305893026	4.9914765079327	4.47901169960073	-0.757976362983585	0.0267626114564962	0.155441527610113
Merged-chr8-46395471-4	chr8	46395309	46395509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-75628.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	4.71031846539759	4.72596220857409	5.17338369439963	4.94772851833963	5.10717888786789	4.88960989168723	5.26059649317517	5.13965763815649	0.394685062885641	0.226699534044564	0.535323164043327
Merged-chr8-33599568-4	chr8	33599446	33599646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017374)	promoter-TSS (NM_017374)	-75.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	7.18462170872971	7.06794171873237	7.27177240494901	7.33604249604032	7.10470885279488	7.03507683640736	7.03387980078983	7.19189500282438	-0.179141986242985	0.33566734170512	0.645927430703489
Merged-chr17-87571814-4	chr17	87571702	87571902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64177.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	5.9639451783156	6.42980956397794	5.79162894883728	6.12549691141546	6.18804122750477	6.16455380390374	6.22159759812134	6.24916001366411	0.150360201444982	0.545856824626978	0.796010912204515
Merged-chr3-31106722-4	chr3	31106621	31106821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	11663.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	6.7638732408089	6.65288251395031	6.3416404398154	6.59068017899082	6.60072612067782	6.68148185376167	6.38397670058304	6.89125069194262	0.0767407967742335	0.732640494769549	0.89409403152779
Merged-chr12-72761781-4	chr12	72761670	72761870	+	985.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008910, intron 1 of 5)	CpG	559.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	5.09848190782226	4.74128878220112	5.0660223973699	4.87119210164192	5.26656560900773	5.27287116058806	5.25624487253433	5.19075881657761	0.583307330408985	0.0541809981547858	0.243054721602036
Merged-chr11-101082474-7	chr11	101082351	101082551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305982)	promoter-TSS (NM_001305982)	-114.0	NM_001305982	71743.0	Mm.182271	NM_027896	ENSMUSG00000001755	Coasy	1300003G02Rik|Dpck|Ppat|Ukr1	Coenzyme A synthase	protein-coding	5.8776878200564	6.12831534691915	5.94679108321863	5.53855489861724	5.94188822891147	6.09948298909254	5.77730196378428	6.02785790053805	0.144193282355925	0.591611670502716	0.821681299347688
Merged-chr6-52905917-2	chr6	52905817	52906017	+	844.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	3703.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	3.3356533052306	3.22347458434475	3.92667486043883	3.06584752282314	3.4430217682582	3.45276192563878	3.49653522133896	3.71053704202558	0.341593338051887	0.552912388569484	0.799913636300554
Merged-chr10-51571415-4	chr10	51571324	51571524	+	994.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	19036.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	4.83850985278543	4.74535887277212	4.97168066820514	4.99131508263184	4.36665948112259	4.41012550817876	4.70771262365802	4.80070540645727	-0.675591245823624	0.0578548470294945	0.252501695794493
Merged-chr12-69683770-4	chr12	69683670	69683870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER102b|DNA|hAT-Charlie	-1918.0	NM_001135559	20663.0	Mm.3770	NM_001135559	ENSMUSG00000034801	Sos2	SOS-2|mSOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding	5.99150771291898	5.78304714844207	5.44015746027784	6.17062290281272	5.70183814306045	5.61886790611116	5.7414579691929	5.69176567505921	-0.331581231404759	0.24123999367392	0.551836536802638
Merged-chr13-118775350-4	chr13	118775252	118775452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008002, intron 1 of 2)	intron (NM_008002, intron 1 of 2)	60653.0	NM_008002	14165.0	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding	7.68800946495787	7.44567319342383	7.39969142094608	7.72593419989956	7.08141707743017	6.79288955018901	6.98657799984707	6.92302691264202	-0.841863486927557	1.47029668771831e-05	0.000389193930587958
Merged-chr6-87503067-4	chr6	87502942	87503142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-6715.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	8.41565595780914	8.59817124876388	8.54649690065442	8.37416204275939	8.3863143091319	8.71923232342538	8.55803671874908	8.46794136637066	0.0643057162674652	0.686907370253175	0.871975133399566
Merged-chr10-60744744-3	chr10	60744649	60744849	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	8033.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	4.42997793074139	4.0947070888551	3.95234786848454	4.21663092809409	3.95662272173517	3.90537258007618	4.40930119461935	3.84047776773055	-0.355613581552438	0.426827460084416	0.718196581280994
Merged-chr16-58477776-4	chr16	58477688	58477888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 6 of 10)	RMER6C|LTR|ERVK	45638.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	6.83498688404423	7.06987707735316	6.89117267595653	6.53428060312446	7.05874655555351	7.08121768033441	7.16342486441973	6.84530099038281	0.290485049113726	0.176956004326158	0.472185620690969
Merged-chr9-114780348-7	chr9	114780049	114780249	+	980.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252479, intron 1 of 3)	intron (NM_001252479, intron 1 of 3)	1844.0	NM_133978	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	3.37908904882095	3.26358127557696	3.5561163221385	2.83703400540092	3.88648229146364	3.7313871588904	3.69511608095229	3.80367495710036	1.70602309070696	0.0023391090131404	0.0263901474792075
Merged-chr17-55749971-4	chr17	55749864	55750064	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139138)	promoter-TSS (NM_139138)	-20.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	5.52034857295192	5.95975294206135	6.29091002862908	6.03324830660746	5.81857635365237	5.21376145150628	5.70829547102044	5.42606812249888	-0.665998701371707	0.0297677427682265	0.166405258972716
Merged-chr4-135240503-4	chr4	135240396	135240596	+	983.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	32264.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	5.69980936880507	5.64523691523402	5.02827068142409	5.2898701927737	5.4703864854454	5.38423211407753	5.42343134017095	5.17009055291281	-0.119213622298258	0.701621729794343	0.879767652498371
Merged-chr9-65772362-4	chr9	65772275	65772475	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 2 of 9)	intron (NM_172536, intron 2 of 9)	55189.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	4.37297029407041	4.36633830971388	3.86113055967731	4.72755556892142	3.90060760804365	4.6648294261995	4.2667401487955	4.41253960303403	-0.101994886084614	0.828963811229759	0.934333879868872
Merged-chr16-49755353-4	chr16	49755232	49755432	+	799.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028680, intron 6 of 10)	URR1A|DNA|hAT-Charlie	56038.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	3.62489051419895	3.34343176542588	3.52268706068623	3.47409042212361	3.19076551286097	3.52621851000998	3.70365533038808	3.40923695150945	-0.0925647130478291	0.859582071279809	0.946903849750453
Merged-chr11-88993781-4	chr11	88993694	88993894	+	948.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5609.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	4.98663945581954	4.96406094344485	4.95335389543427	5.12327346183339	5.02144137893641	4.90309290453293	4.70535448232807	4.87899934918394	-0.255097238299594	0.426233494134162	0.717695305043686
Merged-chr11-110993270-4	chr11	110993176	110993376	+	930.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252207, intron 2 of 2)	intron (NM_001252207, intron 2 of 2)	-4211.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	4.59321106627184	4.5892716405037	4.80126669775883	4.59032332468292	4.71881123793914	5.39161825934606	4.98800838484182	5.21817166241429	0.905003937805477	0.00955602973073451	0.0763742016847015
Merged-chr1-36445345-4	chr1	36445230	36445430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310517)	promoter-TSS (NM_001310517)	-59.0	NM_001310517	214895.0	Mm.287854	NM_001013374	ENSMUSG00000001143	Lman2l	A630028F14Rik|VIP36-like|VIPL	lectin, mannose-binding 2-like	protein-coding	6.88914487862528	6.85091280902609	6.20986250986484	6.60468417437604	6.92352913221333	6.62730955618133	6.99985750229224	6.61475577374897	0.20237520125869	0.39863387247334	0.696793179038619
Merged-chr6-47878033-1	chr6	47877933	47878133	+	1000.0	f0_balb.idr	intron (NM_146175, intron 1 of 7)	CpG	478.0	NM_146175	101095.0	Mm.440186	NM_146175	ENSMUSG00000025821	Zfp282	AI449432|C81429|E430019K09Rik|HUB1	zinc finger protein 282	protein-coding	4.95167502114715	4.41720144914595	4.7967268293519	4.66573510867115	4.29290056276874	4.2924176338698	4.51845393550926	4.31517114766023	-0.814354266641678	0.0324678742605876	0.176431088448156
Merged-chr2-69884029-2	chr2	69883964	69884164	+	800.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_110977, intron 1 of 5)	B2_Mm2|SINE|B2	1551.0	NM_029280	75422.0	Mm.10508	NM_029280	ENSMUSG00000051730	Mettl5	2810410A08Rik	methyltransferase like 5	protein-coding	3.62149391443072	3.56880890491276	3.56787532067039	2.75299282339578	3.60997092992706	3.89583489407092	3.49720676565987	3.76975862607936	0.846336608111825	0.169319074244427	0.461822724438512
Merged-chr10-19691992-4	chr10	19691884	19692084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20603.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	8.2391895914422	8.29803943511583	8.39424920784776	8.07351377070144	8.19370834331398	8.49201188452344	8.36538381202051	8.1995636476879	0.0826691328343796	0.62080611305943	0.837500887125037
Merged-chr12-36208667-3	chr12	36208578	36208778	+	819.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027699, exon 5 of 5)	exon (NM_027699, exon 5 of 5)	9540.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	3.6963768300832	3.83288234379432	3.64959896597949	3.98914797252756	3.08031655023132	3.08294546456308	3.11229569624528	3.04679255453145	-2.90596246032004	4.21811106812533e-06	0.000127653455662455
Merged-chr17-10383621-4	chr17	10383525	10383725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	59023.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	7.14733600100803	7.26287229594145	7.6831980704897	7.69838660943064	7.49305752187318	7.30202601689474	7.6534658962032	7.30268322917306	-0.0411546635379735	0.846546735066479	0.941954402290774
Merged-chr8-127330344-3	chr8	127330223	127330423	+	964.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013580, intron 3 of 13)	intron (NM_001013580, intron 3 of 13)	30671.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	4.0872736312627	3.57060364292739	4.20594358763466	3.91754507785745	3.60904359271493	3.51008682103748	3.6343720794831	3.95500997754467	-0.802875354958607	0.108795869082599	0.364112826505448
Merged-chr5-39927748-2	chr5	39927632	39927832	+	678.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-283101.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	3.82098870821645	3.71546484113236	3.6103746332285	4.0046611198139	3.66534825381103	3.66799098916605	3.53912831637153	3.99999342443957	-0.236520581592156	0.62588291050302	0.840129896434535
Merged-chr2-128179931-3	chr2	128179815	128180015	+	883.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	52340.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	3.39255831305208	3.99269327106502	3.21793084081515	3.21485872721295	3.06512901045928	3.12913262502641	3.07714497546463	3.27716716844943	-1.31153329172469	0.0324261522706069	0.176274610205639
Merged-chr10-34267901-3	chr10	34267804	34268004	+	808.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14286.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	3.76588243740801	3.61268236105916	3.51737537450826	3.58813745391446	3.55697076182134	3.4537393800972	3.50382257262873	3.33928129938757	-0.499095113564669	0.314234193379377	0.626303588947018
Merged-chr11-118148112-4	chr11	118148016	118148216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-18897.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	6.30020329500889	5.90444838112214	5.90041675872297	5.64785858597149	5.90007029937593	5.74599247216877	5.77746762090579	5.67558960633409	-0.259868492579085	0.344446463227472	0.652914285727938
Merged-chr8-105331766-3	chr8	105331671	105331871	+	869.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177699, exon 15 of 22)	exon (NM_177699, exon 15 of 22)	5407.0	NM_025486	66320.0	Mm.29990	NM_025486	ENSMUSG00000014856	Tmem208	1700006C06Rik|2610030K20Rik|Hspc171	transmembrane protein 208	protein-coding	4.40796950403121	4.49383697935555	4.60223608454111	4.58928202435779	4.45731456994357	4.20142847076956	4.16283301192881	4.12698952124217	-0.646779234196339	0.0963207315758674	0.340062751530504
Merged-chr1-60180430-4	chr1	60180322	60180522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173444)	promoter-TSS (NM_173444)	-177.0	NM_173444	269198.0	Mm.205224	NM_173444	ENSMUSG00000073664	Nbeal1	2310076G13Rik|A530050O19Rik|A530083I02Rik|AI662228|ALS2CR17	neurobeachin like 1	protein-coding	8.92249438351138	8.95308495229111	8.81916078897686	8.91310976371779	9.01031238764864	9.01701682835514	8.99756640084908	8.88435416084317	0.0933726485664814	0.498776939036591	0.767833862179825
Merged-chr13-52610670-4	chr13	52610571	52610771	+	876.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	13789.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	4.51960208700973	4.40094309907833	4.21782961038174	3.99574357447291	4.13662917572715	4.05583362879167	3.74722377087009	3.49414467487125	-1.06251250048833	0.0322286866114841	0.17567392377677
Merged-chr10-128519043-4	chr10	128518940	128519140	+	860.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011843, intron 14 of 30)	intron (NM_011843, intron 14 of 30)	6819.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	3.89715655154705	3.49294917897611	3.733272776146	3.78813193676751	4.01272077716783	4.25936236423325	3.93125856728011	4.3989416778676	1.14528427011755	0.0117915304046346	0.0887688358193008
Merged-chr13-93428539-5	chr13	93428449	93428649	+	969.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71259.0	NM_021310	57748.0	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	4.26100968031888	4.41621594324791	4.6647936068844	4.61747217830377	3.4115018966169	3.92570390482256	4.00840778995686	3.79898252229346	-1.93379970045812	4.86627527928805e-05	0.00110623205927278
Merged-chr9-104629406-4	chr9	104629268	104629468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	59885.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	7.60691456467454	7.58890383658856	7.75658029242554	7.57164402605406	7.73017186694283	7.70416661207999	7.72660047049343	7.70381358938111	0.116301863797149	0.477017499139157	0.753269629977283
Merged-chr10-111083518-4	chr10	111083434	111083634	+	954.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73468.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	5.10581629624247	4.84581152937591	4.87321684721187	5.21813947112093	4.93264511127524	4.89386213070806	4.77538178874885	4.75525511583768	-0.37611429572055	0.254797111702445	0.566296247232509
Merged-chr15-54920190-4	chr15	54920077	54920277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136077)	promoter-TSS (NM_001136077)	-31.0	NM_001285994	18606.0	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	5.98747517321127	6.22409234486775	6.03472013094714	6.14788378501704	6.63054858213459	6.25647051407902	6.5453247969744	6.33158567009736	0.527395995736253	0.02196739541598	0.136393789625018
Merged-chr4-134102574-4	chr4	134102482	134102682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045571)	promoter-TSS (NR_045571)	-1.0	NR_045571	67586.0	Mm.282029	NM_026257	ENSMUSG00000012126	Ubxn11	4930506L07Rik|D4Bwg1540e|Soc|Soci|Ubxd5	UBX domain protein 11	protein-coding	6.56853217316464	6.92214832635847	6.13008699157918	6.52758431200274	6.63441883780035	6.59259328543637	6.80935760742931	6.68788946359131	0.16111368650569	0.499850208895909	0.768524538060588
Merged-chr4-41135951-4	chr4	41135869	41136069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026275)	promoter-TSS (NM_026275)	-52.0	NM_026275	67615.0	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	6.15255470619355	6.09762711159658	6.31880832958774	5.82652133310022	5.75925457226501	6.24800865420492	6.10244156102682	6.10940595222384	-0.061181357455686	0.814622199707822	0.92842721928144
Merged-chr3-69004944-4	chr3	69004834	69005034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026641)	promoter-TSS (NM_026641)	196.0	NM_133786	70099.0	Mm.206841	NM_133786	ENSMUSG00000034349	Smc4	2500002A22Rik|C79747|SMC-4|Smc4l1	structural maintenance of chromosomes 4	protein-coding	6.19147530841146	5.89773454579474	6.25185009886872	5.90771719925426	6.22741985920472	6.88879068462466	6.47898968824099	6.507777178577	0.718668728496918	0.00452752761919375	0.0441311341420472
Merged-chr5-20681285-4	chr5	20681162	20681362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 22 of 22)	intron (NM_001170746, intron 22 of 22)	200862.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	6.22322398479427	5.69322120206375	5.99781879870572	6.31030672925103	5.69967010641639	5.54857933919021	5.61281908742587	5.55231587500278	-0.776567401654986	0.00466898693881943	0.0451847479698475
Merged-chr16-36663717-4	chr16	36663619	36663819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	2358.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	7.0169606721883	7.34513383291685	6.88684647818329	7.02886169448355	7.23381551322964	7.06406905773663	7.01949923292993	6.88197367143021	-0.0272349037161254	0.894694444936618	0.960674033564634
Merged-chr6-48444238-4	chr6	48444150	48444350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355746, intron 1 of 4)	intron (NM_001355746, intron 1 of 4)	840.0	NM_001085415	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	7.4144642589913	7.25746612321688	7.36628576668961	7.18726843648403	7.42643661618245	7.58300114125633	7.67829358711708	7.19999050276928	0.241809616374438	0.206169921549068	0.51011432306525
Merged-chr5-75043980-2	chr5	75043868	75044068	+	1000.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_028850, intron 1 of 5)	intron (NM_028850, intron 1 of 5)	673.0	NM_028850	74277.0	Mm.239814	NM_028850	ENSMUSG00000029229	Chic2	1700081B18Rik|4930502K01Rik|BTL	cysteine-rich hydrophobic domain 2	protein-coding	4.38195383245333	4.57713702027895	4.47490018550711	4.81882426983326	4.67067560569853	4.51262360644071	4.80044325767286	4.88641488043421	0.278637586220025	0.448869802736119	0.734080132546508
Merged-chr2-73372172-3	chr2	73372067	73372267	+	894.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276444, intron 4 of 15)	intron (NM_001276444, intron 4 of 15)	14313.0	NM_001276443	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	3.47135165111434	3.46642814958162	3.86893957639541	3.39047955751379	3.16534849500168	3.0058570010037	3.17140296965928	3.11446328541983	-1.65578704901304	0.00488049708408844	0.0467064302783851
Merged-chr2-160276157-4	chr2	160276071	160276271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51323.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	6.82443164276102	6.94265694977306	6.81149420638376	7.21232250986098	6.76860548140712	6.6861010104403	7.14243894877314	6.8066598208062	-0.154493811413205	0.481266991756209	0.756505967188181
Merged-chr4-20041804-1	chr4	20041704	20041904	+	1000.0	f1_balb.idr	promoter-TSS (NM_010281)	promoter-TSS (NM_010281)	-248.0	NM_010281	14590.0	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	6.05652503893888	5.53869983764776	5.81176409733524	5.71998285506014	5.62734553206768	5.52517362145571	5.91142247095369	5.37772969866057	-0.269563925278955	0.342834754216354	0.6516462545027
Merged-chr14-44980110-4	chr14	44980020	44980220	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7991.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	5.17595319567349	4.87975831269359	4.32592838626138	4.21375471176609	5.32187800454877	4.75403317027797	5.23185021885814	4.69924773045444	0.663550754953894	0.118449249484001	0.380772479972676
Merged-chr13-111896475-4	chr13	111896380	111896580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28544.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	6.64394443802886	5.9015255077637	6.4971965513836	6.91454689309414	6.12043660600115	5.68467162499386	6.1247307145034	6.11012010056834	-0.788107431267398	0.00700978150716314	0.0609371220124829
Merged-chr11-29807572-4	chr11	29807471	29807671	+	872.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 17 of 41)	intron (NM_146016, intron 17 of 41)	18097.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	4.19303363575602	4.45854252766401	4.19367267814043	4.47432380090726	4.14883893797984	4.17489306576588	4.0339989215458	3.70664107931002	-0.797422310736219	0.0646385033560543	0.270289715262814
Merged-chr5-117123300-3	chr5	117123202	117123402	+	824.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199685, intron 1 of 20)	intron (NM_001199685, intron 1 of 20)	3173.0	NM_001199685	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	3.94285768629654	4.09579063373717	4.24848518629505	4.1324059890345	3.54746426389249	4.1628810074469	3.65731539280874	3.66889501073408	-0.954809015604269	0.0444135297184805	0.214893567057413
Merged-chr4-10983856-4	chr4	10983762	10983962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23757.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	5.32157502469635	5.30076442903191	5.94376730292184	5.46158117183844	5.64952477493076	5.36491394034114	5.74886023047416	5.72837550708096	0.181253195669089	0.544386140216705	0.795184841840149
Merged-chr16-81437665-4	chr16	81437529	81437729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010954, exon 4 of 16)	exon (NM_010954, exon 4 of 16)	236932.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	6.0998422650737	5.9603229899421	6.47772119717787	6.6278539912629	6.09979887604846	5.57924745326847	6.34835050653125	6.03222269798585	-0.431886976768564	0.134782915391508	0.408643060640293
Merged-chr5-66293749-3	chr5	66293645	66293845	+	886.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302833, intron 10 of 12)	intron (NM_001302833, intron 10 of 12)	32904.0	NM_027602	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	3.63602108771227	3.57137891208089	3.63646845037047	3.91228068103984	4.25047452665211	4.32789917158644	4.09548294225392	4.38946453492505	1.47152619834366	0.00145874091082633	0.0182448988388169
Merged-chr8-106456798-2	chr8	106456698	106456898	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41459.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	3.12433037339503	2.90275091724259	3.41751726321284	2.77489944032619	2.73910503917077	2.7788644694968	2.99837001808227	2.81540182216683	-1.03253080343607	0.119184851245316	0.381948517707009
Merged-chr8-33653113-3	chr8	33653015	33653215	+	993.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010344)	promoter-TSS (NM_010344)	-123.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	5.00191672166413	5.00871226842985	5.37058381372509	5.02190879966322	5.70094328945503	5.48601754011403	5.55554811278545	5.55529545966589	0.8624154112626	0.00254013308238953	0.0280969903141265
Merged-chr14-64688981-2	chr14	64688881	64689081	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 2 of 39)	intron (NM_001081177, intron 2 of 39)	36450.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	3.20207926207355	3.03814669632847	3.14206812849283	4.00086973739397	3.07084473969844	2.97829731841741	2.86157488008643	3.25845167702174	-1.37677823707467	0.0448324204425927	0.216367271147208
Merged-chr5-97345316-4	chr5	97345224	97345424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	47006.0	NM_001033191	97243.0	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	4.94966183961748	5.36024550876164	5.46541818338732	5.68825359051097	5.28278307325574	5.77305369202396	5.88275673169072	5.46157897947933	0.353266718491731	0.280902355025498	0.593075333798828
Merged-chr19-55868130-4	chr19	55868036	55868236	+	827.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-27185.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.87278534421049	4.67871231669025	5.26475317842136	4.89579494089014	3.89575105896773	4.15338976335104	4.55773698937092	4.4909952940369	-1.45075139467549	0.000503717671637329	0.00776192979044074
Merged-chr16-35490754-4	chr16	35490615	35490815	+	900.03125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028295, intron 1 of 16)	CpG	158.0	NM_028295	72599.0	Mm.71015	NM_028295	ENSMUSG00000022844	Pdia5	2700053F16Rik|AU015525|Pdir	protein disulfide isomerase associated 5	protein-coding	3.33387090318887	3.41189517148686	3.84828331400016	3.972528666302	3.80412134076506	3.64514511028871	3.73467559928725	4.02142715895815	0.368603881820602	0.487477347686358	0.76080755434401
Merged-chr2-181276217-4	chr2	181276123	181276323	+	966.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 2 of 9)	intron (NM_198169, intron 2 of 9)	11743.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	5.25932068135787	5.92549202220145	5.57362051982206	4.64814590301776	5.61847156695505	5.77207642246618	5.23395536289316	4.88644879829507	-0.0177387001392781	0.965197722901596	0.987705455701398
Merged-chr7-44816855-3	chr7	44816765	44816965	+	913.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033136)	promoter-TSS (NR_033136)	-207.0	NR_033136	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	3.62111233036836	3.54147806268456	3.50824232121971	3.83989386686172	3.80474311247539	3.56068128525161	3.80628774377335	3.82036309121268	0.320260549403622	0.506975728426674	0.77265384921382
Merged-chr13-106936927-4	chr13	106936827	106937027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029665)	promoter-TSS (NM_029665)	31.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	7.33515824539979	7.59301678556448	7.62503219398915	7.21866240232691	7.96423978893526	7.80240674778105	7.87005590576933	7.68669150227216	0.517700135372554	0.00553234968826096	0.051187718505229
Merged-chr10-59865241-4	chr10	59865170	59865370	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14321.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	5.00837008519818	5.27808013305922	4.89486920459699	5.33347444066794	5.22476019817832	5.11187125444737	5.57964786958406	5.11076779146446	0.209746078883378	0.515138199920793	0.777387197238793
Merged-chr18-35939725-4	chr18	35939619	35939819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-25111.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	5.92060047859121	5.8787750214354	5.78599427999883	5.40837309978692	5.81824666577017	6.09502296309932	5.40329805418098	5.65660845488041	0.0285805024189764	0.922937309556145	0.971456210175335
Merged-chr9-37613673-4	chr9	37613563	37613763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324545)	promoter-TSS (NM_001324545)	57.0	NM_011449	20686.0	Mm.8637	NM_011449	ENSMUSG00000001948	Spa17	Sp17	sperm autoantigenic protein 17	protein-coding	7.99759909734562	7.68191945631798	7.76916866477385	7.67025617350828	8.21957413487212	8.32929957603844	8.14247947313505	8.11594507483335	0.547692936482228	0.00109575276869788	0.0144621891939823
Merged-chr17-57113112-4	chr17	57113014	57113214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7172.0	NR_033508	100169874.0	Mm.76700	NR_033508	ENSMUSG00000079414	Gm11110	-	predicted gene 11110	ncRNA	7.45708663162355	7.63911838474602	7.5229097634172	7.22043829863131	7.48884077137985	7.50609946871394	7.4119953453783	7.29188911957795	-0.0409132944020758	0.828113208386396	0.934051755137947
Merged-chr11-72946541-4	chr11	72946459	72946659	+	756.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14610.0	NM_016745	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	3.54828322395754	3.58114999802796	3.2606963363895	3.07175400197121	3.61888028123847	3.66653637879692	3.31163550083503	3.43914730828206	0.487460880518615	0.370913710428225	0.675068605253279
Merged-chr15-73731910-2	chr15	73731810	73732010	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	6980.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	3.73345876314496	3.49358730287137	3.57520473507629	3.21467246672298	3.74373888143696	3.63580503459723	3.5610753015888	4.0392293286895	0.794185860545738	0.11883608771466	0.3813389862111
Merged-chr14-40958809-4	chr14	40958725	40958925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	8071.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	5.63720028141483	5.77217876938179	6.13548476536218	6.33788434293502	5.29581402842212	5.34671425123838	5.28136858848423	5.73593715104252	-0.982641634642328	0.00128561493786554	0.0164702637981158
Merged-chr7-142919426-4	chr7	142919334	142919534	+	949.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19468.0	NM_009377	21823.0	Mm.1292	NM_009377	ENSMUSG00000000214	Th	-	tyrosine hydroxylase	protein-coding	3.7247935576273	4.16907657039497	3.95494894134297	4.00008862563849	4.45019484837139	4.44838364106574	4.039176045683	4.05406462555355	0.742210988327585	0.0875553757081633	0.322639002184259
Merged-chr2-104494597-4	chr2	104494496	104494696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145824)	promoter-TSS (NM_001145824)	-107.0	NM_001145824	15259.0	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	6.79539073804808	6.75035819309067	6.83947009990294	7.0314173357047	7.14250338015759	6.95929630581329	7.41296254074244	6.63736001844666	0.28522994691091	0.214447455194691	0.520250695749928
Merged-chr17-17589132-4	chr17	17589024	17589224	+	759.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	L1MEf|LINE|L1	35365.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	4.24186504006972	3.8229070366918	3.82323684297453	4.01027935755998	4.01575552914537	4.10187003763976	4.22261427567758	3.64527057444879	0.0750505352481911	0.869703134536826	0.951061597990424
Merged-chr1-176068127-4	chr1	176068046	176068246	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357846, intron 3 of 8)	ORR1F|LTR|ERVL-MaLR	145796.0	NM_001357845	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	4.79599395363583	5.11267779958177	5.75482700001913	6.01665280852872	5.16075190558331	4.796534881644	5.52152048688165	4.92012450389905	-0.69336694803309	0.0910247244009507	0.329689032064689
Merged-chr3-135597156-4	chr3	135597064	135597264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 17 of 24)	intron (NM_008689, intron 17 of 24)	94383.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	5.98935054927003	5.66438423918546	6.33548096613985	6.46961546644053	5.93870409065614	5.69649164144613	5.93765525869648	6.20787779184203	-0.31976547354816	0.269303346363719	0.580874797700108
Merged-chr17-28407659-4	chr17	28407569	28407769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 8 of 10)	intron (NM_010220, intron 8 of 10)	-42453.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	5.93250031027501	5.59290355429003	5.66142496265856	5.84985062076014	5.24050444818461	5.49285765769203	5.50026645867498	5.73112670407208	-0.469602484364665	0.0930277084699499	0.3336668813899
Merged-chr16-90868322-3	chr16	90868236	90868436	+	730.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199210, intron 2 of 7)	intron (NM_001199210, intron 2 of 7)	37477.0	NM_001316761	70967.0	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	3.31932115938785	3.05224125990746	3.15905274739633	3.22200737163715	3.16212463946331	2.9407378973488	3.08949265059362	3.1574228175259	-0.389784668499175	0.492091908665155	0.763346782261791
Merged-chr11-88973937-4	chr11	88973830	88974030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016706)	promoter-TSS (NM_016706)	-5.0	NM_016706	12812.0	Mm.268004	NM_016706	ENSMUSG00000033983	Coil	C79982|Cln80|p80|p80-coilin	coilin	protein-coding	6.22676109656419	6.1649680528609	6.22786113078519	6.14066717180366	6.25863217274482	6.26192494193585	6.30569409596825	6.22341194653785	0.117802865732679	0.589933510032214	0.820631189012546
Merged-chr18-83713918-4	chr18	83713763	83713963	+	902.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	372699.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	4.63275253050279	4.42613665176843	5.2256395187769	4.96824061781215	3.9442489258108	4.36937712492262	4.00069481989467	4.33415696083773	-1.58254024265357	0.000235785871861838	0.00416141893708251
Merged-chr19-6679903-4	chr19	6679816	6680016	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-136846.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	4.92768925443359	4.91525921679127	5.10515370795056	4.37925213237247	4.69320103960332	4.41375869922874	4.31557519030758	4.42819514397352	-0.793849299809219	0.0486751132667598	0.22783230664922
Merged-chr1-85652069-1	chr1	85651969	85652169	+	635.0	f0_balb.idr	intron (NM_013673, intron 1 of 19)	RSINE1|SINE|B4	2081.0	NM_001313714	20684.0	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	3.42213012915518	3.1038293866751	3.16231803599729	3.32201112943415	3.10313769837251	3.01472418944802	2.96706152257368	3.03974722543825	-0.905282681114432	0.117680495141915	0.379416585754694
Merged-chr19-57436664-3	chr19	57436574	57436774	+	772.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16232.0	NM_029839	72133.0	Mm.258404	NM_028115	ENSMUSG00000025086	Trub1	2610009I02Rik|9030425C13Rik|AI448235|BB118943|C76870	TruB pseudouridine (psi) synthase family member 1	protein-coding	2.67734797302711	2.5875483829879	2.95391536793463	2.98600704064463	2.36694477225057	2.34453429964836	2.47119523748856	2.47699720257875	-2.38544802940542	0.00295344826667757	0.0315893813894628
Merged-chr1-171826286-7	chr1	171826179	171826379	+	859.4523929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEg2|LINE|L1	-13418.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	3.65840810503436	3.37195289793876	3.60798900516614	3.39509005955148	3.35735222215862	4.01024962943134	3.42876988672479	3.31669243234262	0.150530997408946	0.780722894175274	0.914614705385241
Merged-chr1-170950817-4	chr1	170950727	170950927	+	926.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-23244.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	4.3688010167811	4.3777847849077	4.49704060864717	4.25146382169577	4.68085352379261	4.70579621871024	4.51582165801958	4.2748255704192	0.445702644341351	0.232262459952536	0.541891165796319
Merged-chr5-75044629-4	chr5	75044524	75044724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028850)	promoter-TSS (NM_028850)	17.0	NM_028850	74277.0	Mm.239814	NM_028850	ENSMUSG00000029229	Chic2	1700081B18Rik|4930502K01Rik|BTL	cysteine-rich hydrophobic domain 2	protein-coding	6.99887085173425	7.21736378592031	6.81495336924077	6.68303594403968	6.85444916785926	7.27105918998882	7.20859842597184	6.24553130644612	0.0163846124594839	0.951779783417052	0.982835405595506
Merged-chr13-76099143-3	chr13	76099036	76099236	+	821.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029847)	promoter-TSS (NM_029847)	402.0	NM_001081352	218343.0	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	-	tetratricopeptide repeat domain 37	protein-coding	3.65062208871542	3.74240697892969	3.54950161821591	3.53416112816057	3.3898639596616	3.36576667954051	3.42631716510652	3.43727323363988	-0.724072702548234	0.147796553353479	0.429177989194977
Merged-chr11-5485989-4	chr11	5485958	5486158	+	842.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34583.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	3.69594995184717	3.55260312633533	3.59513302401347	3.71651971612294	3.92688650670123	3.41288974049796	3.47215988130508	3.2314563894197	-0.287725485550895	0.595747257787625	0.824150570800077
Merged-chr10-120201526-4	chr10	120201440	120201640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028679)	promoter-TSS (NM_028679)	57.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	7.32567703494326	7.72286149819835	7.51911637390689	6.6720409142641	7.61107796333091	7.87832653366725	7.5254979002801	6.59941135015577	0.153976781843377	0.732321489574287	0.893963778565797
Merged-chr8-18899273-4	chr8	18899151	18899351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51620.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	6.03953385549767	5.75388049303585	6.29688097103271	6.14306568407568	5.56323930713691	5.66881714581941	5.85952174325205	5.76534188729294	-0.581404360224897	0.0271526163157004	0.156861949252109
Merged-chr2-166729848-4	chr2	166729750	166729950	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16018.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.7742911388772	5.29612246390607	4.46811529410634	4.83299771178401	5.12749974995168	4.65006656182867	4.99835465372394	4.919296111529	0.12145113779104	0.743703490229706	0.899050114318278
Merged-chr9-35175922-5	chr9	35175739	35175939	+	966.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027030, exon 1 of 6)	exon (NM_027030, exon 1 of 6)	148.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	5.66099899367101	5.84847947002707	5.68617040263085	5.23342088220992	5.62905928244385	5.47393821811781	5.23780630908166	5.32501532130948	-0.310273530027474	0.311598283007803	0.623631959698671
Merged-chr11-117832424-4	chr11	117832330	117832530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027827, exon 3 of 11)	exon (NM_027827, exon 3 of 11)	-6416.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	6.30600341329065	6.23092410293585	5.95188407055391	5.8753172475132	6.02590999309282	6.00960267881095	5.85172119884998	6.11787083702359	-0.134760181616078	0.591246751381674	0.821525680896513
Merged-chr18-39636745-3	chr18	39636645	39636845	+	694.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136752.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	3.63467148417038	3.29540940386397	3.78604569923054	3.69235104591221	3.43335250814734	3.80648238509157	3.62048578862628	3.78372444138381	0.14669698793476	0.771375309193419	0.910379161490028
Merged-chr18-67607569-4	chr18	67607504	67607704	+	990.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33751.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	5.05303725343816	4.8243896783718	4.98971748006308	4.92794975137588	4.64917920353254	4.91076112395872	4.75270122290901	4.9530027401754	-0.272502756187146	0.404657938021087	0.701732715768529
Merged-chr2-84705620-4	chr2	84705529	84705729	+	962.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144887, intron 2 of 11)	intron (NM_144887, intron 2 of 11)	9535.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	4.73875182354273	4.8470342011905	4.88672584833809	5.1190188264833	4.79417425645133	4.9876973426451	4.46198309964453	4.69686515897216	-0.352398141762776	0.315271806658836	0.627105605858262
Merged-chr5-9111937-4	chr5	9111805	9112005	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	11168.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	5.41447168250164	5.46003906527552	5.521546775745	5.29538297019751	4.9569329703846	5.3477693452669	5.17950297517834	5.32576811765961	-0.395642146632534	0.181900817422794	0.478545176054741
Merged-chr16-92670501-3	chr16	92670399	92670599	+	843.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	26830.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	3.27355801844441	3.39055152285863	3.21511424541309	3.19584199241216	3.38334218442613	3.26334400521118	3.20389940261843	3.38226702925112	0.170438515187351	0.745968239434908	0.899850054545454
Merged-chr5-125189754-5	chr5	125189612	125189812	+	977.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-10498.0	NM_001253904	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	4.30163953368503	4.61769255458408	4.3892014479995	4.18319278111928	4.49767123695212	4.23440365574648	4.09196611145578	4.46763411192987	-0.0815326929168489	0.839643093337125	0.93897785072825
Merged-chr9-53650928-3	chr9	53650802	53651002	+	664.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161618, intron 3 of 17)	intron (NM_001161618, intron 3 of 17)	16605.0	NM_001161618	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	3.05752662008435	2.90921245264607	3.28981423904364	3.2457721272227	3.23955006279788	3.1669294956276	3.22304426144337	3.17741741434673	0.243056710555834	0.666694385674017	0.862099084982087
Merged-chr1-156002549-4	chr1	156002453	156002653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29298.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	5.48823970243395	5.39266429783293	5.22234844019297	5.94999711266689	6.15170955400393	5.57550336709468	6.30421671137617	5.85020940576004	0.712007923008373	0.0267307320835869	0.155345099524627
Merged-chr4-101159599-4	chr4	101159492	101159692	+	860.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 17 of 24)	intron (NM_146145, intron 17 of 24)	90554.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	4.00597683019679	3.7606802066967	4.1873887674691	4.25589774481303	4.1318284674484	3.66417032079519	3.98960715417085	4.22608204266016	-0.130160827954288	0.778470776652253	0.913745806756274
Merged-chr13-97241099-4	chr13	97240978	97241178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007930)	promoter-TSS (NM_007930)	-27.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	7.9987595410815	7.85752459010047	7.79889027725307	8.18596553099307	7.923472902176	7.54360219552923	8.05726811388284	7.67943309703677	-0.201152512192947	0.298855401248839	0.611126405639852
Merged-chr13-4942701-1	chr13	4942601	4942801	+	1000.0	f0_c57.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	-333537.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	3.25070232464576	3.14573525336728	3.25108494862744	2.58186630599804	4.80483147681213	4.89580290690135	4.72458295289742	4.74740816022234	6.79104942092782	1.29176606751309e-20	4.8139590010217e-18
Merged-chr5-29574472-4	chr5	29574375	29574575	+	926.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133907, intron 1 of 22)	RLTR45|LTR|ERVK	5233.0	NM_133907	100763.0	Mm.137746	NM_133907	ENSMUSG00000039000	Ube3c	AI853514|mKIAA0010	ubiquitin protein ligase E3C	protein-coding	5.22075508075886	5.0492481004504	5.10980929111959	4.69850301164302	4.67765167551508	4.51048489350292	4.59297796463511	4.65354352878303	-0.839713802993104	0.0188184895530389	0.12281663225112
Merged-chr10-80538373-3	chr10	80538255	80538455	+	891.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026094, intron 1 of 27)	intron (NM_026094, intron 1 of 27)	769.0	NM_026094	67331.0	Mm.52511	NM_026094	ENSMUSG00000003341	Atp8b3	1700042F02Rik|1700056N23Rik|ATPIK|SAPLT	ATPase, class I, type 8B, member 3	protein-coding	3.6520584790001	4.18142082985517	3.52440725684094	3.4470116842553	4.33820575544014	4.19553884322707	4.00599305579564	3.92583523893488	1.08681173844609	0.0281781466920538	0.160776938147791
Merged-chr10-51553974-4	chr10	51553876	51554076	+	854.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36484.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	4.3116603275269	4.47892511932641	4.26332903155066	4.76699235834664	4.69785435489611	4.8545263756951	4.34048851298896	4.4463114534684	0.244118673274487	0.541504106892096	0.793272720948538
Merged-chr11-76495459-4	chr11	76495317	76495517	+	938.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346670)	promoter-TSS (NM_001346670)	-922.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	4.59005811948838	4.41436512254779	3.87353353887669	4.16192645959953	4.16340018616953	4.31780519235946	3.97194004460089	4.44278266760378	-0.120865703584437	0.782607480931413	0.91529005173258
Merged-chr7-18910564-4	chr7	18910449	18910649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033314)	promoter-TSS (NM_001033314)	-145.0	NM_001033314	232933.0	Mm.333624	NM_001033314	ENSMUSG00000074358	Ccdc61	C530028I08Rik|Gm159	coiled-coil domain containing 61	protein-coding	8.71683347937991	8.65493472470333	8.60858486199523	8.64037731338636	8.66403868898423	8.70593089500309	8.67855817789811	8.34432925395678	-0.0601377769619771	0.698704759841075	0.878505428649175
Merged-chr1-119498893-5	chr1	119498802	119499002	+	916.6333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022327, intron 1 of 4)	ID_B1|SINE|B4	5880.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	4.65555632598381	4.30909571149647	4.9171154647219	4.41689461044348	4.1264880312131	4.63416241440474	4.35346139143393	4.32428523587643	-0.509844417641727	0.209814567421185	0.514330716906745
Merged-chr3-109342228-3	chr3	109342109	109342309	+	850.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	1526.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	3.65184508563617	4.07054228908082	3.87088592434521	4.20969019531938	3.98511060986048	3.82856913900181	3.69663410292077	3.86866589326855	-0.360574230650115	0.442960217524169	0.729629169998677
Merged-chr1-167336602-4	chr1	167336493	167336693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-13398.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	5.91199915608137	5.88636059203112	5.95787707667132	6.17021350605702	5.97183381382099	5.66308650309577	6.07205990409728	5.93143313704372	-0.122240186275848	0.627683542883303	0.841282116569049
Merged-chr17-13146463-3	chr17	13146370	13146570	+	886.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12B|LTR|ERVK	-14679.0	NM_199252	381058.0	Mm.390935	NM_199252	ENSMUSG00000067049	Unc93a	Unc93l|unc-93A	unc-93 homolog A (C. elegans)	protein-coding	3.8290020176533	3.7043597906221	3.87418599744192	2.84431130028396	3.79750946502331	3.64399752183315	3.32797912882102	3.40215800811953	-0.237334354422079	0.707248038086727	0.882414568664592
Merged-chr9-115863035-3	chr9	115862948	115863148	+	776.922241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-46407.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	3.15824729029301	3.13809005951451	3.15867383162245	3.1398453468541	3.07863790775586	3.02320396376621	2.97159491231793	2.84704909635893	-0.669529221097192	0.249087804926269	0.560254719928171
Merged-chr3-104788825-4	chr3	104788755	104788955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291859)	promoter-TSS (NM_001291859)	-179.0	NM_007484	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	6.5729105792563	6.70183008457512	6.95260531500655	6.754704793437	6.13387098307251	6.58233009448953	6.11440830168792	6.38256434381091	-0.650382917408325	0.0046777052056238	0.0452349061979961
Merged-chr8-10596463-4	chr8	10596330	10596530	+	954.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001319151, intron 33 of 34)	intron (NM_001319151, intron 33 of 34)	286024.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	4.41228850903775	4.73711655067516	4.92730879937978	5.15187816432922	4.84069461451236	4.49038192978444	4.76651724724359	4.82197541023373	-0.235091338402189	0.53456032953498	0.789286995820758
Merged-chr9-99517653-4	chr9	99517524	99517724	+	852.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001166138)	TTS (NM_001166138)	47203.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	4.13997661211604	3.71514508617875	4.00721047688285	4.1052912852703	4.04443905304955	3.74712018956509	4.20247460253112	3.68805704289694	-0.168307307540207	0.717677987941793	0.887135277942824
Merged-chr12-76676541-3	chr12	76676454	76676654	+	956.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 1 of 35)	intron (NM_013675, intron 1 of 35)	33993.0	NM_013675	20741.0	Mm.32881	NM_013675	ENSMUSG00000021061	Sptb	AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219	spectrin beta, erythrocytic	protein-coding	4.5728134779951	4.05332711124711	4.1848102727757	4.68525479484587	3.81238858971267	4.00171907842988	3.972260187603	3.98630646665753	-1.22430118258521	0.00600183497301357	0.0542406026578678
Merged-chr12-119157249-4	chr12	119157151	119157351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81025.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	6.74595227078632	6.34373731361898	6.6116122670763	6.8951259057281	6.64352275059623	6.67227312897212	6.82160224357209	6.78441683022047	0.0758164540163229	0.73323776891091	0.894434219693058
Merged-chr5-130718589-3	chr5	130718496	130718696	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021371, intron 4 of 5)	ORR1E|LTR|ERVL-MaLR	269804.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	5.0267530167042	4.8225788422549	4.86725920503289	5.34115752864529	4.76324918560045	4.34421153287855	4.40243945756495	4.15396513413563	-1.25345815014718	0.00171386424657666	0.0207150862976873
Merged-chr16-77174912-4	chr16	77174821	77175021	+	942.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-154407.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	5.02389870745228	4.99930739489988	4.99047140128123	5.33102501681965	4.66419245310322	4.72117289440153	5.03338644413863	5.34677945278181	-0.274604587044976	0.43541859281625	0.724601608951367
Merged-chr13-107023025-3	chr13	107022932	107023132	+	863.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145779)	promoter-TSS (NM_001145779)	462.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	3.48241968237741	3.31102983278774	3.59401244622862	3.62782839980009	3.60519443817833	3.59877241989934	3.41134693019428	3.95834384155016	0.449543244960152	0.377869444291673	0.680558922477594
Merged-chr3-59248136-4	chr3	59248055	59248255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 24 of 43)	intron (NM_177855, intron 24 of 43)	14830.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	7.06890112257809	7.02699217004973	7.04751956491627	6.82356572846427	6.51292219544577	6.67544601401626	6.31506786504196	6.56164773860836	-0.663745673014201	0.00148678734613014	0.0185338067443428
Merged-chr11-79120299-4	chr11	79120196	79120396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	26177.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	6.07729849360088	6.0043671448552	5.6766676647655	5.54476147725486	5.63407001103409	5.74423980484109	5.74832176466397	5.84429653016827	-0.147249537595916	0.591966510317251	0.821896878240415
Merged-chr11-78465778-4	chr11	78465747	78465947	+	834.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026740, exon 1 of 5)	exon (NM_026740, exon 1 of 5)	146.0	NM_026740	52466.0	Mm.131618	NM_026740	ENSMUSG00000020829	Slc46a1	1110002C08Rik|D11Ertd18e|HCP1|Pcft	solute carrier family 46, member 1	protein-coding	3.62062707892113	3.6021519908918	4.04355929338014	3.29128759810905	3.28720662682853	3.39428654243337	3.20149274695581	3.27697444363007	-1.26829460970982	0.025682349939179	0.151141010891428
Merged-chr5-64341127-4	chr5	64341020	64341220	+	837.345825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 17 of 18)	MLT2B3|LTR|ERVL	110763.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	3.90683074907285	3.85075405905984	4.23631459077134	3.74485804867105	3.86026613642293	4.44551433932879	3.99289708229964	4.23353942229549	0.550155435240162	0.225164970730224	0.533540312647113
Merged-chr1-34464781-4	chr1	34464683	34464883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 5 of 14)	L1MB8|LINE|L1	5037.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	6.55052979095696	6.51334614098428	6.7088631168369	6.74395904813776	6.64823481814165	7.01092878000885	6.65989487023814	6.81697259940987	0.207576664326657	0.326405074240738	0.637923349237677
Merged-chr11-95413883-4	chr11	95413782	95413982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025287)	promoter-TSS (NM_025287)	-201.0	NM_025287	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	8.13608412439396	8.30663461093106	7.79848050907091	7.75003987816093	8.41166761103289	8.41610571737909	8.1412439092111	7.96702866606765	0.300353574152441	0.138994492770083	0.414593226669937
Merged-chr14-25459635-3	chr14	25459551	25459751	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	CpG	466.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	4.62745716496703	5.08239351625608	4.96556958495625	4.97338892912027	4.83979337565309	4.76203130221519	4.51951330179295	4.92887269238347	-0.315154582970377	0.359717144902965	0.665443059431823
Merged-chr13-100594290-3	chr13	100594218	100594418	+	918.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22626.0	NM_178410	218518.0	Mm.25300	NM_178410	ENSMUSG00000021636	Marveld2	BC003296|MARVD2|Mrvldc2|Tric|Trica|Tricb|Tricc	MARVEL (membrane-associating) domain containing 2	protein-coding	3.64935410661472	3.43142705904126	3.56789039671483	2.494612455121	5.75333821383831	5.31284205561847	5.62389973236675	5.85036617084325	8.42325727179644	2.16099667347427e-25	1.42423687241875e-22
Merged-chr17-34879686-4	chr17	34879591	34879791	+	926.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013484, intron 3 of 17)	intron (NM_013484, intron 3 of 17)	2409.0	NM_013484	12263.0	Mm.283217	NM_013484	ENSMUSG00000024371	C2	-	complement component 2 (within H-2S)	protein-coding	4.62852590402173	4.64953917476205	4.11937289639374	4.56034747085579	5.17468708673604	4.55272676485075	4.48807003008702	4.2254126187548	0.360660118608463	0.406607497492318	0.703049240732416
Merged-chr11-20477690-4	chr11	20477599	20477799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65554.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	6.55949745027556	6.21840727849871	6.19196913822037	6.43775381159394	6.42624002957549	6.94169666204828	6.73207147453949	6.74812816619267	0.510045077444523	0.0277179356738502	0.158953830432564
Merged-chr2-122765335-4	chr2	122765210	122765410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162503)	promoter-TSS (NM_001162503)	-49.0	NM_001162503	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	6.97203915725901	6.78299982186137	6.63023872761621	7.17609525269768	6.87127282996409	6.88703708817829	7.03389197895738	6.89098622568766	-0.00218914190541295	0.991863047393907	0.996882127784068
Merged-chr8-84665062-4	chr8	84664986	84665186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2234.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	5.59216901113101	5.10504503081736	5.82045164449081	5.24719837233676	6.02300355256532	5.90005189346485	6.02075388883479	6.00864292469006	0.889925701416113	0.001673261178557	0.020337891154624
Merged-chr2-22749995-4	chr2	22749912	22750112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24315.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	6.43579251606008	6.36815138315476	6.23359801951172	6.4273050430137	6.38192611971624	6.30683756054737	6.62168240050102	6.49876635704896	0.1222035096307	0.574882228248004	0.812637259775993
Merged-chr5-124050240-4	chr5	124050138	124050338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17978.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	6.28546130509558	6.80770810014255	6.71163261504624	6.37874825324268	6.57361337322599	6.34217729423916	6.29251711309643	6.20185156427262	-0.280311014145941	0.247600204608594	0.558805232210642
Merged-chr8-71307501-1	chr8	71307401	71307601	+	545.5	f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	MTD|LTR|ERVL-MaLR	34787.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	3.34711451840432	2.68737839542116	2.76112861603507	2.59006233177419	3.15996192461704	3.20112293473909	2.95500323707139	3.02619621900517	0.86915162779341	0.195926867007167	0.496860427059397
Merged-chr1-153803711-4	chr1	153803600	153803800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243223, intron 13 of 20)	intron (NM_001243223, intron 13 of 20)	40441.0	NM_001243223	240816.0	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	7.21036106851323	7.37656903990214	7.38862002263832	7.23472328334928	7.39744839415036	7.11568257425442	7.30258546932111	7.27190777636786	-0.0261926811622412	0.885609194504997	0.957045685546015
Merged-chr5-73647581-4	chr5	73647507	73647707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011890, intron 1 of 5)	CpG	124.0	NM_011890	24051.0	Mm.89310	NM_011890	ENSMUSG00000029156	Sgcb	43kDa|AI747103|AI844814|beta-SG	sarcoglycan, beta (dystrophin-associated glycoprotein)	protein-coding	6.37486836042479	5.95291384562348	6.62408899279871	6.35360338286366	5.89378141359022	6.17637296301895	6.30867739740998	6.1870558903318	-0.306901943167321	0.230557452656251	0.540079277384957
Merged-chr2-34790467-4	chr2	34790351	34790551	+	868.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 4 of 7)	ORR1A2|LTR|ERVL-MaLR	9461.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	4.05578298373439	4.2168653833394	3.53338101032222	3.38297715589252	4.01146151552065	3.99460733373254	3.80475864868118	3.59413728085619	0.0595990764561921	0.911127761216314	0.966904162861598
Merged-chr19-32361455-3	chr19	32361360	32361560	+	849.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 1 of 9)	ORR1E-int|LTR|ERVL-MaLR	-12144.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	3.83639500388782	3.55356361026888	3.48572785329854	3.65853308346031	3.49375348626764	3.27236205495973	3.77550907064671	3.54029976028649	-0.34195670252584	0.502881019834989	0.770024053153377
Merged-chr10-43829158-1	chr10	43829058	43829258	+	661.0	f0_balb.idr	intron (NR_131055, intron 1 of 2)	ORR1D1|LTR|ERVL-MaLR	3251.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	3.16072423437923	3.18645477112516	3.83019085914319	3.4469365426343	2.5792056969718	2.69917928410364	2.74662950116476	2.82939619812006	-3.86965805346592	1.16967685872086e-05	0.000317167349054828
Merged-chr19-28677209-4	chr19	28677143	28677343	+	886.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045330)	promoter-TSS (NR_045330)	-981.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	4.35145427776378	4.28381906439632	4.66039427533583	4.74104385625966	4.09847295014785	4.52467614500356	4.19605923122467	4.00214285119407	-0.762699767187805	0.0664268632683972	0.274700389356906
Merged-chr11-116533105-4	chr11	116533032	116533232	+	745.483337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025367)	promoter-TSS (NM_025367)	-106.0	NM_025367	20698.0	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	3.52561203305445	3.42919247461824	3.19074122794946	3.40515739947515	3.10267042737871	3.30238180240021	3.24150254234461	3.52401049492539	-0.349973259761824	0.519958472074104	0.780413411519922
Merged-chr5-64038715-4	chr5	64038607	64038807	+	918.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6266.0	NR_045384	74757.0	Mm.159329	NR_045384	ENSMUSG00000106219	5830416I19Rik	-	RIKEN cDNA 5830416I19 gene	ncRNA	4.3216098262505	4.2343015380168	4.45898791222606	4.60242625963082	4.75695803711117	4.71464233576966	4.70787536861955	4.49867173259882	0.547821344251515	0.137766013659705	0.412851426670771
Merged-chr10-75837489-4	chr10	75837383	75837583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2602.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	8.47553793830517	8.65649063987184	8.42084985443566	8.43483140686526	8.54189726779391	8.61419556710643	8.51477153973323	8.16217426910817	-0.0369336204878415	0.826354403487879	0.93341395042234
Merged-chr5-72844543-3	chr5	72844440	72844640	+	975.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 1 of 17)	L1MB5|LINE|L1	23908.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	4.20145798432894	3.81287976998614	4.202112993536	4.65908488621668	3.78978444297788	3.97415749964204	4.22579449657281	4.0608856536648	-0.645716142619091	0.172198240168333	0.465460474230468
Merged-chr3-84679075-4	chr3	84678981	84679181	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177260, intron 1 of 6)	intron (NM_177260, intron 1 of 6)	12889.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	5.23514003164326	5.49139684449111	5.87457446934198	6.26429997773547	5.23545793363832	5.11283545650266	5.24404074772606	5.78398710810597	-0.714673528964017	0.0457659650181493	0.219398208530544
Merged-chr13-21941082-4	chr13	21940982	21941182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4012.0	NM_183014	193452.0	Mm.187446	NM_183014	ENSMUSG00000006720	Zfp184	4930500C15Rik	zinc finger protein 184 (Kruppel-like)	protein-coding	6.32197735213698	6.03867625842438	6.16035118890851	6.32817203269267	5.88918394023388	6.05699474510561	5.8261956657382	5.72268585812475	-0.541831290424857	0.0258910298978789	0.152054258836726
Merged-chr17-57347941-4	chr17	57347844	57348044	+	812.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10742.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	3.86895728524892	3.81632802583455	4.01826313964769	3.84218101939637	3.90882346615001	4.09285681127183	4.04635417709514	4.18949278053439	0.478251311940123	0.257939235221067	0.569755868563229
Merged-chr1-180973888-4	chr1	180973780	180973980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 22 of 22)	(CAGA)n|Simple_repeat|Simple_repeat	31362.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	6.45673031007811	6.27084532701581	6.52201427181557	6.75287501054767	6.12450886467052	6.06446925922411	5.9771747157817	6.41992348524242	-0.550679243282798	0.0240002218793898	0.144527224463036
Merged-chr11-85186974-3	chr11	85186873	85187073	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	15877.0	NM_028589	73634.0	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	3.52588241019186	3.34617840163533	3.36377527351794	3.36706503445759	3.59621569113614	3.21995290882542	3.23203715356285	3.62201419158995	0.132906508451736	0.801852072539639	0.923559097579232
Merged-chr15-102442717-2	chr15	102442617	102442817	+	830.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2285.0	NM_001356575	110542.0	Mm.60331	NM_144547	ENSMUSG00000023047	Amhr2	Misiir|Misrii|Mrii	anti-Mullerian hormone type 2 receptor	protein-coding	3.03917810883692	2.76934812265156	2.91628600585368	2.76725707304112	3.21956709568987	3.08917277631342	2.96871272429512	3.09535910708852	0.979845556454799	0.0947817242891102	0.336870108015143
Merged-chr4-53714159-4	chr4	53714029	53714229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139309)	promoter-TSS (NM_139309)	-53.0	NM_139309	246179.0	Mm.247210	NM_139309	ENSMUSG00000028414	Fktn	D830030O17Rik|Fcmd	fukutin	protein-coding	6.73051657146013	6.84404704671555	6.71674135013602	6.81418345168925	6.68887535604736	6.98011311049968	6.91471529179237	6.93235109904569	0.132301713529518	0.504940498785429	0.771129223660333
Merged-chr6-38352686-4	chr6	38352639	38352839	+	900.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 1 of 8)	intron (NM_028864, intron 1 of 8)	1864.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	4.39549695422032	4.67744846277799	4.02757605088282	3.75067845283403	4.31087367474132	4.48554174548993	3.95726636510217	4.17573035757602	-0.0281653253735832	0.952817421385868	0.983276598943455
Merged-chr4-133574784-4	chr4	133574715	133574915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172876)	promoter-TSS (NM_172876)	70.0	NM_172876	242691.0	Mm.40110	NM_172876	ENSMUSG00000028850	Gpatch3	D930035B09Rik|Gpatc3	G patch domain containing 3	protein-coding	5.51857136817767	5.4666532773529	5.31991274871269	5.33051109441969	5.54505051036235	5.49464508179733	5.29379578942621	5.40556506417268	0.0667429459508054	0.80956796607098	0.926509176894707
Merged-chr7-81211910-1	chr7	81211810	81212010	+	543.0	f0_balb.idr	Intergenic	Intergenic	-1894.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	2.99806388228612	2.83913544156476	3.05302561829125	2.85578822629731	2.83036959106829	2.55553278201781	2.93030174531574	2.81789720754207	-0.651374058411672	0.314569670609256	0.626507585111397
Merged-chr10-8874818-4	chr10	8874705	8874905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	11265.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	6.14224579696243	6.41780058548464	6.0140128075097	6.30198860632656	6.22828669311741	5.97096781971525	6.19089211606104	6.42998228735	-0.0288039477004379	0.904913916284336	0.964695555007872
Merged-chr10-34206016-3	chr10	34205894	34206094	+	701.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	B3A|SINE|B2	1557.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	3.72175592074456	3.48295961747422	3.55719727957341	3.39677675994992	3.75419218944521	3.48535607000333	4.1352317543359	3.91150950589903	0.930934947296773	0.0582845613953287	0.253797274241673
Merged-chr9-45893928-4	chr9	45893825	45894025	+	996.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178709, intron 5 of 13)	MTC|LTR|ERVL-MaLR	12257.0	NM_001361114	235315.0	Mm.220945	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	4.97287039890613	5.17745255292476	4.86508272017484	5.15828998384693	4.88893158793637	4.79628411333244	5.33199438897501	4.65801770235184	-0.220384597391267	0.522252471242089	0.781906706712815
Merged-chr11-69092506-4	chr11	69092404	69092604	+	796.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009497)	TTS (NM_009497)	3976.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	3.59534650443553	3.41575667031658	3.29999764917537	3.5578988105947	3.80267068913924	3.71261667228498	3.63263458766071	3.59382889287817	0.672709413441253	0.167420958611652	0.459082225634441
Merged-chr12-85746443-4	chr12	85746325	85746525	+	901.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145447)	promoter-TSS (NM_145447)	-114.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	4.25351496441602	4.07433931991486	4.37573598210914	3.68494981993297	4.27770111409293	4.24579367334319	4.10174530834388	4.01931768444202	0.156382193303307	0.727943271251331	0.891750552533363
Merged-chr1-60343365-4	chr1	60343305	60343505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030013, exon 1 of 13)	exon (NM_030013, exon 1 of 13)	105.0	NM_001313721	77951.0	Mm.197640	NM_030013	ENSMUSG00000049439	Cyp20a1	A930011N14Rik|Cypm	cytochrome P450, family 20, subfamily a, polypeptide 1	protein-coding	7.17607741345568	7.43793567746973	7.66060338641481	7.05886487680776	7.31754238477503	7.42369673102548	7.73751039421978	7.52008432449239	0.21485294148898	0.313777299897612	0.625752393517094
Merged-chr6-53951141-3	chr6	53951029	53951229	+	851.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027749, intron 6 of 12)	intron (NM_027749, intron 6 of 12)	27544.0	NM_027749	71287.0	Mm.158654	NM_027749	ENSMUSG00000052955	Cpvl	4933436L16Rik|HVLP	carboxypeptidase, vitellogenic-like	protein-coding	3.3369884112052	3.68896273538406	3.51494360413335	3.72122949970697	3.30764478822915	3.45092070830119	3.83517886485511	3.45657824563237	-0.186938282582047	0.723229752648417	0.889535016141386
Merged-chr19-53303562-4	chr19	53303470	53303670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-6936.0	NM_001008542	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	5.84372041322695	5.8391229052124	5.93325743846319	5.53758322524473	5.80719747059935	5.82255320001091	5.85972779108721	5.55963817808409	-0.0176508621173219	0.946943194138436	0.98101762641852
Merged-chr15-58986638-3	chr15	58986537	58986737	+	914.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	52827.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	3.73881222783671	3.63567103675882	3.46758958820775	4.03983490884032	3.29677340953949	3.70020173130404	3.6741043844616	3.52482964033962	-0.624465682473358	0.233390583192139	0.543040635259939
Merged-chr2-132463610-4	chr2	132463504	132463704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-27124.0	NR_028286	70371.0	Mm.394667	NR_028286	ENSMUSG00000086379	1700026D11Rik	-	RIKEN cDNA 1700026D11 gene	ncRNA	5.55252138134168	5.22103167813722	5.74316577849093	5.40287560828101	5.22050187022365	5.37454311734137	5.52552181562131	5.46959046630118	-0.156179073251199	0.594032828759693	0.823266307249001
Merged-chr1-89569224-4	chr1	89569126	89569326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	114415.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	6.97295588166053	6.42081995428404	7.15087582091084	6.97529489620132	6.29120956146382	6.41581022645158	6.60144695990509	6.49965962596762	-0.652063763344209	0.00642343431827113	0.057080353475683
Merged-chr16-4683305-2	chr16	4683205	4683405	+	712.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023646)	promoter-TSS (NM_023646)	-765.0	NM_023646	83945.0	Mm.248337	NM_023646	ENSMUSG00000004069	Dnaja3	1200003J13Rik|1810053A11Rik|C81173|Tid-1|Tid1l	DnaJ heat shock protein family (Hsp40) member A3	protein-coding	2.61210007817834	2.65151463127009	2.53995488267401	2.31291653449978	2.66526551635115	2.92045683532259	2.73631943507154	3.08039344370425	1.65486550996798	0.0154658341313064	0.107179691133508
Merged-chr17-55959327-7	chr17	55959293	55959493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_108021)	promoter-TSS (NR_108021)	8.0	NR_108021	100504333.0	Mm.391908	NR_108021	ENSMUSG00000097077	Gm16712	-	predicted gene, 16712	ncRNA	7.37294916570655	7.43100462519666	7.04933646084385	6.98027647227018	7.27696410359525	7.43775727172281	7.30768773768541	7.5940928256839	0.258213558708016	0.205260406483681	0.508859472252119
Merged-chr18-38420276-4	chr18	38420177	38420377	+	955.8583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	1370.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	4.71152289676531	4.85835913119069	4.71227393035279	5.1329718197236	4.98779556728576	4.80549904971532	4.87501185665815	4.62655603431714	-0.0997095211223311	0.77514698967744	0.91224145329603
Merged-chr17-26439017-3	chr17	26438941	26439141	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081656, exon 3 of 5)	exon (NM_001081656, exon 3 of 5)	24076.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	3.24110027695175	3.33084905590276	3.35728177342326	3.18614177435057	3.32369443837621	3.41325619929122	3.23012207700126	3.51076997148425	0.353084102294241	0.497257516677634	0.766982020988234
Merged-chr12-84031080-4	chr12	84030985	84031185	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7294.0	NM_134247	171282.0	Mm.482217	NM_134247	ENSMUSG00000052392	Acot4	B430212I04Rik|PTE-Ib|Pte1b|Pte2b	acyl-CoA thioesterase 4	protein-coding	5.25179292716486	4.84086373381009	5.10190410201673	4.79272693140974	5.2259450351393	5.0314874347605	5.01167219690736	5.03271500936239	0.179335416025244	0.579673139154255	0.815458207278168
Merged-chr5-72235181-3	chr5	72235069	72235269	+	924.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 3 of 22)	intron (NR_003966, intron 3 of 22)	31826.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	3.58044491602354	3.6616487071795	3.73037420561723	3.96999475860849	3.59300533487382	3.10165963919055	3.33893925527497	3.46882502028338	-1.16883167980735	0.0353605707726732	0.186591301581148
Merged-chr2-25621403-4	chr2	25621302	25621502	+	974.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001109993, exon 2 of 4)	exon (NM_001109993, exon 2 of 4)	600.0	NM_001040130	51875.0	Mm.271147	NM_001040130	ENSMUSG00000026939	Tmem141	1110065P14Rik|AI663999|D2Ertd217e	transmembrane protein 141	protein-coding	4.70219747577189	4.67882077677917	4.96501224313934	5.09034182584265	4.75773297982717	5.20187210392723	4.79909326887094	4.99499845297795	0.113073654319022	0.744393869932176	0.899294498800491
Merged-chr11-60454656-4	chr11	60454579	60454779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021354)	promoter-TSS (NM_021354)	88.0	NM_021354	13495.0	Mm.41803	NM_021354	ENSMUSG00000020537	Drg2	AI255295|AI461605|DRG-2	developmentally regulated GTP binding protein 2	protein-coding	5.16942022528996	5.0967196684279	5.13874695547745	4.9177771374468	5.31211354176772	5.06959455964832	4.94438414306726	5.22750538161463	0.159098510044468	0.607392102081661	0.829999364685165
Merged-chr6-113076684-7	chr6	113076551	113076751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028385)	promoter-TSS (NM_028385)	593.0	NR_027010	14910.0	Mm.280950	NR_027008	ENSMUSG00000086429	Gt(ROSA)26Sor	AV258896|Gtrgeo26|Gtrosa26|R26|ROSA26|Thumpd3as1	gene trap ROSA 26, Philippe Soriano	ncRNA	7.98599742994355	8.34237795615763	8.61104819460762	8.05974064194725	8.33082458364814	8.69816881812913	8.49945266209163	8.1879070570184	0.216579045751349	0.284920704558022	0.596692092201232
Merged-chr11-44415017-5	chr11	44414870	44415070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001303244)	TTS (NM_001303244)	14907.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	6.62828073875647	6.77607754403984	7.06168547999772	6.90071171987919	6.8912704327724	7.17767835771853	7.08348940774786	7.14762464293429	0.304440955675127	0.135342922759633	0.409581624829642
Merged-chr6-50160053-1	chr6	50159953	50160153	+	640.0	f0_balb.idr	intron (NM_001361248, intron 4 of 13)	intron (NM_001361248, intron 4 of 13)	49193.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	2.56079982475583	2.355486829286	2.67034407070702	2.61611317044435	2.04696238671654	2.10026721419821	2.15868670312504	2.08378224037785	-4.04583224629091	0.00027912267364658	0.00478508496808525
Merged-chr17-84365518-4	chr17	84365432	84365632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	100676.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	5.26558527729378	5.65182289379214	5.49079572240328	5.53707326396715	6.1076228589012	5.72455084789964	5.90295077198924	5.70277804690395	0.630506316516646	0.0204212117942615	0.129783748046971
Merged-chr5-53401261-4	chr5	53401148	53401348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134142.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	6.8358705694551	6.48946986723647	6.52320677068922	6.54092600720565	6.75707263693755	6.64840476156162	6.81544110893701	6.75031393628594	0.211520904196651	0.306815800966593	0.61919661675327
Merged-chr5-102061392-4	chr5	102061285	102061485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	8536.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.49036707460136	5.92925704933677	6.20688801738326	6.04549433117889	6.03830715827884	6.0745165076603	6.00043007706399	5.96254746510923	0.108222264680342	0.679878353407151	0.86857902618052
Merged-chr8-41043737-4	chr8	41043619	41043819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 5 of 13)	intron (NM_001005863, intron 5 of 13)	-1788.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	5.15112087241546	5.37895115691843	4.69693235832146	5.30600277175384	5.18546563247514	5.22685055273671	5.02794999043625	5.11614624184155	-0.056807257430904	0.861883003150098	0.947901186692584
Merged-chr1-135734325-4	chr1	135734225	135734425	+	988.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007791, intron 1 of 5)	intron (NM_007791, intron 1 of 5)	5158.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	4.21088776525951	4.52683497692354	4.49964094542308	4.87229499640109	4.74288429118734	4.49302370617632	4.81479451365944	4.69579308242768	0.262893856775976	0.497681645918331	0.767160446248674
Merged-chr2-157108414-4	chr2	157108321	157108521	+	892.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139520, intron 11 of 16)	BGLII_A|LTR|ERVK	21366.0	NM_001177439	383766.0	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	4.32739207344645	4.107898847503	4.14727552129442	4.18742311450604	4.28135736699872	4.00217231279397	4.30835642787537	4.62340770576036	0.318195317818192	0.433502135912437	0.723018218996447
Merged-chr14-32770659-3	chr14	32770563	32770763	+	756.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15300.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	4.018885142414	3.64071046817879	3.88132657129703	3.94936734426758	3.80184336211926	3.84509360058014	3.65655565610906	3.92671244123718	-0.207153016342212	0.648355383867555	0.852153840888272
Merged-chr16-44136524-8	chr16	44136394	44136594	+	871.3875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	2765.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	3.67817264777404	3.44471167100736	3.44687527603426	3.74335834149162	3.70958909632675	3.90073736361632	3.66386988825794	3.96059484426455	0.64422725783906	0.182210010501099	0.47878218634963
Merged-chr6-122486323-2	chr6	122486223	122486423	+	622.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027664)	promoter-TSS (NM_027664)	-18.0	NM_027664	108653.0	Mm.277939	NM_027664	ENSMUSG00000040649	Rimklb	4931417E21Rik|4933426K21Rik|AA097693|AI325948|AU015629|Naags	ribosomal modification protein rimK-like family member B	protein-coding	3.34233148385043	3.12219443955646	3.34279781516622	3.20790488341628	3.13527963407887	3.15490117178256	3.32930882211445	3.23042050914541	-0.150870125998509	0.780287370481721	0.914431162030384
Merged-chr7-118468301-3	chr7	118468186	118468386	+	814.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20064.0	NM_001362179	110058.0	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk|sytXVII	synaptotagmin XVII	protein-coding	3.13420938000786	2.89272369026384	3.13457342968414	2.59355348812258	4.16789229545216	4.27252540965219	3.73501790202785	3.97868511994085	4.46134731903576	1.89829843687877e-12	1.9385794037101e-10
Merged-chr16-92433646-4	chr16	92433499	92433699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	32570.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	4.97610275666975	5.79726070869344	5.40257613823926	5.14734831017461	5.10598969900404	5.60287972797559	5.22901440284885	5.01176346974626	-0.206957732323747	0.551099872637314	0.798827703906175
Merged-chr8-88650258-6	chr8	88650064	88650264	+	885.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 1 of 12)	intron (NM_145857, intron 1 of 12)	2817.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	4.06587645172752	5.01577081978437	4.41600894932355	3.26819415598607	5.22785500915341	4.41105048327924	4.30490205296636	4.41306818537628	0.557746553163611	0.511989490846602	0.775668292015302
Merged-chr6-71272029-2	chr6	71271929	71272129	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145568)	promoter-TSS (NM_145568)	10.0	NM_145568	57896.0	Mm.250569	NM_145568	ENSMUSG00000053012	Krcc1	AA792894	lysine-rich coiled-coil 1	protein-coding	5.68115254768224	5.68573320429267	5.88769941141132	5.89789608714798	5.31841580432706	5.58296223471641	5.49599803702577	5.37095452651715	-0.614096006038129	0.021876998207955	0.135986626097636
Merged-chr2-28841857-3	chr2	28841763	28841963	+	895.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033294, intron 1 of 19)	intron (NM_001033294, intron 1 of 19)	1457.0	NM_001033294	227674.0	Mm.44179	NM_001033294	ENSMUSG00000026806	Ddx31	5830444G11Rik|Gm997	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31	protein-coding	3.22992915810401	3.44494154703862	3.23031730975556	3.43263741700137	3.15564862576858	3.14513806198157	3.48424668089531	3.34326542192409	-0.212991962152287	0.695664375947226	0.876805160171895
Merged-chr19-12473473-4	chr19	12473347	12473547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172442, intron 7 of 8)	intron (NM_172442, intron 7 of 8)	12668.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	6.94208869285036	7.16186283250152	6.83132433287319	6.42998631122778	6.25300288581589	6.52247614237201	6.12741271509891	6.26072255090001	-0.81874204594997	0.00116383501719028	0.0152029019432165
Merged-chr19-53900174-4	chr19	53900103	53900303	+	873.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011050, intron 1 of 11)	intron (NM_011050, intron 1 of 11)	-3148.0	NM_001168492	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	4.18876864114411	4.17106084680111	3.99611617215832	4.355726501778	4.09768772636951	4.22040722603763	4.25675239241819	4.04486427388124	-0.109603172273235	0.788505338136222	0.91812687233996
Merged-chr15-27469374-4	chr15	27469264	27469464	+	917.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020332, intron 1 of 11)	intron (NM_020332, intron 1 of 11)	2687.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	5.1213287147491	5.05932931797948	5.69831096227137	5.84493273992249	4.78019634294853	4.78530146858387	4.76046585463195	5.08507157774341	-1.19059882400921	0.000906054788962454	0.0124478042508316
Merged-chr1-189707284-4	chr1	189707186	189707386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19200.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	5.90383780094605	5.36742255404338	5.73657793496365	6.20260175122317	6.17130043108152	5.91294845089405	5.94010931989998	5.70657006535117	0.15128270047634	0.612629294708519	0.832832725096038
Merged-chr11-117308094-4	chr11	117307999	117308199	+	920.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-23616.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	4.52366448966095	3.87334637994974	4.21605725019305	4.3526297447554	4.05600039997327	3.86858485190787	4.23960101199855	3.97420287879891	-0.564064170445633	0.201718153023506	0.504156139969769
Merged-chr17-5570429-4	chr17	5570346	5570546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	77846.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	7.04679458258471	6.87989796406265	7.60696531664623	7.69157409982136	7.08199835010912	7.00352084528494	7.59379937657775	7.51701528614107	-0.0495716803610606	0.848215101406528	0.942625689889496
Merged-chr10-42271582-4	chr10	42271475	42271675	+	892.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	5167.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	4.6546075923273	4.52094030389307	4.65536379942975	4.90408846964369	4.32770711069974	4.3861204920867	4.59527549008155	4.72603906044947	-0.422423657293511	0.25530808728321	0.566865111326869
Merged-chr1-88705966-4	chr1	88705866	88706066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3775.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	6.66524781587709	6.5856393741837	6.17847194160309	6.42504354079342	6.77387877653511	6.81215558766645	6.82554849912173	6.69127388212937	0.434187654870311	0.0424962140636441	0.209331350922915
Merged-chr17-13052314-3	chr17	13052197	13052397	+	801.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013832)	promoter-TSS (NM_001013832)	-17.0	NM_001013832	436440.0	Mm.335670	NM_001013832	ENSMUSG00000071311	Gpr31b	12-HETER|GPR31c(t)|Gpr31|Gpr31c	G protein-coupled receptor 31, D17Leh66b region	protein-coding	3.99432731512172	3.86992368837962	4.08418283506971	3.37802453069211	3.67054026372207	3.74376881990815	4.18685595085013	3.99243374517222	0.175574372567101	0.729312626972436	0.892556704127014
Merged-chr10-95671303-3	chr10	95671205	95671405	+	931.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107159.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	4.24006259303822	3.91212924223898	3.72297244317856	3.73661890016961	3.6953490228535	3.60747831440841	3.47847682242852	3.66654966488053	-0.888513931617621	0.0713934762681822	0.286762386281414
Merged-chr13-3725970-4	chr13	3725968	3726168	+	950.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78250.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	4.2383988568674	4.02094314873879	4.19745468418003	4.04529177797164	3.748542819572	3.80444759411815	4.21943207699407	4.06118943633115	-0.416421722418733	0.342705701734706	0.6516462545027
Merged-chr7-111028876-4	chr7	111028808	111029008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009431)	promoter-TSS (NM_009431)	-43.0	NM_009431	22083.0	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	7.32292199820374	7.63207015012062	7.5811128074875	7.33686195124615	7.3056815454975	7.50124589543681	7.37902453931433	7.65081736945048	-0.0135021530979318	0.943177524631404	0.979449878554173
Merged-chr11-20149791-4	chr11	20149695	20149895	+	732.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-36844.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	4.08322954133919	4.08840101373191	3.84641879279592	3.16956618805076	4.1634999931201	3.67753378324792	3.66583437600214	4.20483586457922	0.280861263599381	0.615554445626319	0.834483380349219
Merged-chr6-128648751-4	chr6	128648702	128648902	+	966.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13583.0	NM_053165	94071.0	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding	5.45791053545117	5.10209302968468	5.73353925480398	5.55037502266567	5.04394299639168	4.80489729225431	5.01182548495769	4.71045085720572	-1.07175640153208	0.00118085908968812	0.0153604475776518
Merged-chr2-79372689-4	chr2	79372630	79372830	+	863.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048176, intron 2 of 12)	(TG)n|Simple_repeat|Simple_repeat	56258.0	NM_001048176	228094.0	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	3.74204995607481	2.96101010423857	3.54448317958908	3.54546312645413	3.58656188369395	3.48791968966267	3.67961024483035	3.48784106842223	0.273614254221449	0.63456518385041	0.845267520422343
Merged-chr16-94774131-3	chr16	94774039	94774239	+	806.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025584, intron 3 of 4)	intron (NM_001025584, intron 3 of 4)	82551.0	NM_001025590	16522.0	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	3.93756991010309	3.64498109292537	4.29642399374977	4.21950277108675	3.48989718615738	3.2574780625758	3.6696808960499	3.7370279314351	-1.51333160475608	0.00469576293513242	0.0453629615441397
Merged-chr1-91231975-4	chr1	91231873	91232073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18331.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	5.40261463409046	5.43412517536814	5.48519770695933	5.42721461680522	5.2900807163977	5.29713539743481	5.2594922668147	5.18587312594214	-0.317557741198734	0.253144031433737	0.564437521956645
Merged-chr2-51147948-6	chr2	51147849	51148049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028810, intron 2 of 4)	CpG	1162.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	5.59119855264914	5.49289008482759	5.85326175851577	5.4267245651234	5.48188845892553	5.62876572858578	5.64019096452055	5.5616057849221	-0.0194151907152674	0.943513415389587	0.97960330307221
Merged-chr7-28866055-4	chr7	28865910	28866110	+	928.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008496, intron 3 of 3)	intron (NM_008496, intron 3 of 3)	1624.0	NM_008496	16858.0	Mm.20973	NM_008496	ENSMUSG00000053522	Lgals7	Galectin-7|Pig1	lectin, galactose binding, soluble 7	protein-coding	3.72057076194145	3.57768660414656	3.95561230177816	3.60695189251146	3.46200642474247	3.55118424949917	3.48430627934479	4.07491738108871	-0.155996645053474	0.761395549196672	0.906527854829917
Merged-chr13-74209164-2	chr13	74209064	74209264	+	594.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177333)	promoter-TSS (NM_177333)	-464.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	3.3650041475201	2.98590846451086	3.55059102286427	3.12927920615044	2.98550814606175	2.99756410250989	2.94892388933311	3.02323398168358	-1.1368083511435	0.062182264798577	0.263864994998087
Merged-chr7-24474101-3	chr7	24473999	24474199	+	902.166626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011113, intron 5 of 6)	intron (NM_011113, intron 5 of 6)	-7924.0	NM_153112	260299.0	Mm.178322	NM_153112	ENSMUSG00000054793	Cadm4	Igdf4c|Igsf4c|Tsll2	cell adhesion molecule 4	protein-coding	4.03963567050191	3.95491163107225	3.84626700074218	4.03789875180303	4.2556334180701	3.79698210759607	3.77814876834586	3.79077823503434	-0.102431569833869	0.82295178306872	0.932185203682946
Merged-chr12-24534324-4	chr12	24534220	24534420	+	804.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020614, intron 8 of 14)	intron (NM_020614, intron 8 of 14)	35739.0	NR_028341	21340.0	Mm.39082	NM_020614	ENSMUSG00000059669	Taf1b	4930408G01Rik|A230108M10Rik|TAFI68|Tafi86|p63	TATA-box binding protein associated factor, RNA polymerase I, B	protein-coding	4.50321377144689	4.15532815081786	4.14810385586093	4.03640215991812	4.1359552905202	4.46869575433163	4.27386559717627	4.95191638897862	0.65196031627473	0.131985713528811	0.404407457094184
Merged-chr8-106338082-4	chr8	106337996	106338196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021491)	promoter-TSS (NM_021491)	-108.0	NM_021491	58994.0	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	8.38230952078783	8.46940908943085	8.39977918567983	8.44395081045895	8.57207199554624	8.73783633419724	8.77026065527598	8.44146462527544	0.264256144888687	0.0870382968346006	0.321728259728112
Merged-chr2-4620314-1	chr2	4620214	4620414	+	671.0	f0_c57.idr	Intergenic	Intergenic	31821.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	3.20681339368151	3.14514757040007	2.79092660703541	2.81748583168314	3.59828978254404	3.43788229012545	3.46042566498582	3.1444603901273	1.62568518515522	0.00605657302577239	0.0546527397821314
Merged-chr6-122304482-3	chr6	122304352	122304552	+	683.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-4268.0	NM_010749	17113.0	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	3.63652939567236	3.34652687593289	3.00057133020974	3.11074129736981	3.70466904817159	4.03471948974089	3.46139881282515	3.58321885557486	1.37717737263532	0.0148004156187927	0.103831932123994
Merged-chr5-96898366-4	chr5	96898260	96898460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22912.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	6.64043026741319	6.85237265502003	7.36924356877564	7.23857628014589	6.48945572417887	6.41268105858237	6.65429443525335	6.6368577619071	-0.724978274675056	0.00230994291729929	0.0261321272131181
Merged-chr6-113690615-4	chr6	113690517	113690717	+	969.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 10 of 11)	RLTR35B_MM|LTR|ERVL	-6433.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	5.17904292153645	4.47707604610623	4.83913298018434	5.48170623880341	5.05153189246632	5.16060752464704	4.7770745698941	5.08343497630228	-0.0781413586379362	0.839390587984492	0.938916030143447
Merged-chr9-63614767-4	chr9	63614647	63614847	+	922.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	12101.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	4.81938578305687	4.60246889579962	4.18895314978314	4.68522075551939	4.23676062741875	4.61080494155979	4.62024998669189	4.81689910707248	-0.0406794803964206	0.918179464380068	0.969861634391549
Merged-chr13-36315067-4	chr13	36314970	36315170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 3 of 5)	intron (NM_001039189, intron 3 of 5)	197427.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	6.19357416342886	6.54472103593541	6.78981509606535	6.54643754518501	6.66030134003695	6.76058560948649	7.06413470659463	6.274136718722	0.263827919152049	0.297645256281627	0.609882310348031
Merged-chr9-110982795-4	chr9	110982701	110982901	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028838, exon 9 of 9)	3' UTR (NM_028838, exon 9 of 9)	-6698.0	NR_152179	791282.0	Mm.406769	NR_152179	ENSMUSG00000057802	Gm10030	-	predicted gene 10030	ncRNA	5.19679493668541	5.24088288964226	4.85473612063157	5.62984368055085	4.44222181965285	3.96540814573774	4.20698457099663	4.48191585678558	-2.08262173243716	5.71545987923368e-07	2.09209304746562e-05
Merged-chr10-120702038-4	chr10	120701944	120702144	+	906.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63688.0	NR_038000	70874.0	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	4.35069896643545	4.01499221654201	3.93812982166709	4.05233593808125	4.29194781068833	3.94553482935712	4.4411445119702	4.22537743837283	0.377084601156591	0.368963459211993	0.673345513613766
Merged-chr14-103343997-4	chr14	103343899	103344099	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207215, intron 1 of 84)	intron (NM_207215, intron 1 of 84)	2801.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	5.16793107706359	5.24547829090952	4.84160858513943	4.95219756838605	5.27246395482194	5.54725496515762	4.85934231159479	5.47628538673264	0.471052249918487	0.151681860956713	0.435397958665883
Merged-chr13-102889109-4	chr13	102889001	102889201	+	955.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	128846.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	4.6104131596551	4.59217444968265	4.97240244784636	5.10126004557218	4.6773705701751	4.29832378871928	4.59001580649871	4.99994119418983	-0.379720555673199	0.327488634008881	0.639005382256399
Merged-chr11-40694471-4	chr11	40694358	40694558	+	939.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199274, intron 1 of 6)	intron (NM_001199274, intron 1 of 6)	745.0	NM_001199274	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	4.52347900879001	4.60407002696234	4.19343979961846	4.94404619900442	4.58064031102662	4.42535065886077	4.62182353625484	4.71425468270349	-0.0580927177679868	0.883458236621165	0.956216623701137
Merged-chr6-38806912-6	chr6	38806846	38807046	+	893.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	30365.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	3.70760494077019	3.59486316840235	3.61359269592479	3.74961225307819	3.2188730852584	3.25645083633689	3.38745723318268	3.14379293542907	-1.502286669055	0.0049941574669759	0.0475112449000104
Merged-chr13-100775888-4	chr13	100775774	100775974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021886)	promoter-TSS (NM_021886)	25.0	NM_021886	26886.0	Mm.273502	NM_021886	ENSMUSG00000045273	Cenph	1700021I11Rik|2410018A12Rik|2610042E16Rik|2810046K12Rik|AU044255|CENP-H|ENP	centromere protein H	protein-coding	6.21914340656548	6.02434873529139	5.84064840920456	5.78885315944024	6.17656100378827	5.77725807509448	6.22401353955722	5.9760198689599	0.141379441482225	0.583994884546258	0.817485282428486
Merged-chr19-4065104-4	chr19	4065009	4065209	+	963.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-5662.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	4.95616513194037	5.07563932282766	4.20683281424479	3.76524535323904	5.23415517911659	5.1906988304192	4.44024608547742	4.14751263334839	0.398859647538168	0.618731927393582	0.836062966920086
Merged-chr13-112509652-3	chr13	112509587	112509787	+	866.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45617.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	3.5794500844924	3.34742083957658	3.46788619837597	3.35376996977375	3.44646363605919	3.69799726345087	3.71522524387568	3.82115345784907	0.771614955557156	0.115811863883257	0.376560001979254
Merged-chr16-17928083-6	chr16	17927911	17928111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153150, exon 1 of 9)	exon (NM_153150, exon 1 of 9)	208.0	NM_153150	13358.0	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	4.81634774604472	4.59919672168622	4.97815072409826	4.07054921129613	4.47867358599535	4.59586851125302	4.57076393152485	4.88067696975331	-0.0174060723734556	0.966653177330646	0.988228459737422
Merged-chr13-3541675-4	chr13	3541575	3541775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	3600.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	6.95863142229414	6.73527847054537	7.08826314229588	6.91919123619428	6.37758400656272	6.6655423281148	6.76821831437367	6.7114525240348	-0.423898338452946	0.046572542336659	0.221878128798822
Merged-chr17-10985536-3	chr17	10985440	10985640	+	939.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	145181.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	3.68618394197518	3.40736640760594	3.27459683048543	3.6825859012279	3.12245406932377	3.18892863593493	3.20170609411183	3.38894392079335	-1.10858179202706	0.045752014372824	0.219357579889751
Merged-chr1-55836880-4	chr1	55836779	55836979	+	949.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-94362.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	4.59024578420092	4.15750536431612	4.42290235165094	4.63937686299178	4.58742095930773	4.68306609943846	4.90883299685768	4.42015043292917	0.405067148683439	0.290810096244424	0.603099231996441
Merged-chr13-58478615-4	chr13	58478517	58478717	+	983.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75274.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	5.28935822506547	4.85890149168042	5.64346876117234	6.01197769386841	4.82703230592396	5.40331331070243	5.41050156290999	5.43416415616933	-0.434464133525389	0.254018893172431	0.565343343040476
Merged-chr8-11039038-4	chr8	11038950	11039150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-30620.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	7.5497427667383	7.27920254941472	7.41336706136756	7.8008622812744	6.99709966855019	7.29725397648959	7.46071246698652	7.24255899095183	-0.377517038307924	0.0712719176506972	0.286439184013374
Merged-chr10-128821777-4	chr10	128821685	128821885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153109)	promoter-TSS (NR_153109)	21.0	NR_153109	66118.0	Mm.235562	NM_025364	ENSMUSG00000078427	Sarnp	1110005A23Rik|Cip29	SAP domain containing ribonucleoprotein	protein-coding	8.93881333900083	9.08510052300018	8.93648741498464	8.93061903574081	8.94305810230588	9.12925920373179	8.9509473884549	8.96023262280742	0.0278135205824566	0.844671691509479	0.941125889580383
Merged-chr8-83064256-4	chr8	83064159	83064359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 6 of 6)	intron (NM_177378, intron 6 of 6)	-101093.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	5.45923968099216	5.05450505162617	5.29825074093938	5.24177347332193	6.06358010401311	6.19243907390009	5.90705189080269	6.196653138444	1.37030451474469	1.90000176055939e-07	7.69284558104988e-06
Merged-chr8-4678476-4	chr8	4678354	4678554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	65284.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	7.61159210707567	7.82293264185926	7.64812438510005	7.13061376008842	8.21779389991641	8.05523616150063	7.95649887220442	7.96963453071107	0.637838478890394	0.00178046092452984	0.0213748403014183
Merged-chr6-39228815-4	chr6	39228712	39228912	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22039.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	4.34181727815931	4.11889548264329	4.25750353278393	4.96459925953411	4.0132911346578	3.97129726640418	3.89137677909329	4.06612042540915	-1.25016025016037	0.00691624828937025	0.0603668469637137
Merged-chr10-18943559-4	chr10	18943439	18943639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41B|LTR|ERVL	68424.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	5.6370288311202	5.69272405041672	6.65332611745186	6.49801797077059	5.7180257592152	5.81995989866526	6.4325123145864	6.47665812539518	-0.0759029214933178	0.827844278810082	0.933911212004483
Merged-chr9-120934139-4	chr9	120933996	120934196	+	926.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007614, intron 1 of 14)	CpG	518.0	NM_001165902	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	4.57028211670717	5.10022090710419	4.39116846748449	4.46748928184357	4.86976925716404	4.90098789800194	4.32357262398372	4.64934804117989	0.0975587957527833	0.808152245991262	0.925975801123789
Merged-chr5-115489525-2	chr5	115489425	115489625	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	U4|snRNA|snRNA	-5041.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	4.97488603911413	5.76243836367328	4.70994904969216	5.07198910096124	5.22174054260643	6.00067477844997	5.85870754411505	5.38324527504386	0.79321485278299	0.038791265071268	0.197844902300644
Merged-chr7-38210023-1	chr7	38209923	38210123	+	782.0	f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	17971.0	NM_024413	72287.0	Mm.333798	NM_024413	ENSMUSG00000074170	Plekhf1	1810013P09Rik|APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology domain containing, family F (with FYVE domain) member 1	protein-coding	2.85005541429612	2.70039496427017	2.85041307474527	2.72428611746831	2.61131024377659	2.95926576501681	2.89977538344292	2.96718558738671	0.379980967927615	0.54490371401607	0.795575389591555
Merged-chr16-21289820-4	chr16	21289726	21289926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046162, intron 1 of 4)	intron (NR_046162, intron 1 of 4)	7046.0	NR_046162	328646.0	Mm.404748	NR_046162	ENSMUSG00000096918	Gm16863	A830060N17	predicted gene, 16863	ncRNA	6.89596438827226	6.8035185406703	6.78705869828074	7.21125019424012	6.62011486082475	6.82780965636542	6.83569484473782	6.94388531896898	-0.204949929712382	0.342881234512572	0.6516462545027
Merged-chr3-108722283-4	chr3	108722127	108722327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029522)	promoter-TSS (NM_029522)	72.0	NM_029522	76123.0	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	6.88913330551583	7.02525802915703	7.23995001926304	6.98315089651041	6.77729652987059	6.91034490159959	6.9332746831707	6.69744277820946	-0.288556504075067	0.147181809419877	0.427969035201497
Merged-chr2-51376829-4	chr2	51376739	51376939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61061.0	NR_130155	73375.0	Mm.396227	NR_130155	ENSMUSG00000086007	1700057H21Rik	-	RIKEN cDNA 1700057H21 gene	ncRNA	6.84818582867306	6.97657889573016	6.86220185508474	7.04856368589937	6.29489869750306	6.15615980952335	6.33615949558915	6.13799994185494	-1.02489775129886	1.1583078016253e-06	4.00229082581978e-05
Merged-chr17-5560308-1	chr17	5560208	5560408	+	570.0	f0_balb.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	67708.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	2.88365055820204	2.83235791556299	2.82393205874126	2.81726139410594	2.5891994326431	2.93165811477105	2.87296018302042	2.55074587393896	-0.455200054090666	0.48585746438542	0.759645215980007
Merged-chr11-53492213-4	chr11	53492118	53492318	+	932.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12023.0	NM_183173	237761.0	Mm.145208	NM_183173	ENSMUSG00000044352	Sowaha	A830006N08Rik|Ankrd43	sosondowah ankyrin repeat domain family member A	protein-coding	5.0395546936826	5.35226955459535	5.0077178344995	5.30870777545388	4.54983846020611	4.88850595248506	4.512476718102	4.66540029918781	-1.09912492358718	0.00118734178344198	0.0154334917464603
Merged-chr18-35022013-4	chr18	35021928	35022128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67677.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	6.40074313795946	6.40376281033146	6.15389173557528	6.4309651167764	6.38208120309639	6.39202485964091	6.29827244325778	6.39729981526577	0.0120746761719916	0.955758345947133	0.984292813605202
Merged-chr11-104550239-1	chr11	104550139	104550339	+	1000.0	f0_balb.idr	promoter-TSS (NM_010858)	promoter-TSS (NM_010858)	381.0	NM_001285990	217232.0	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	4.42792813566811	4.94184860296984	5.05525001930482	4.79708828198993	4.97015195024583	5.38279153541414	5.06283121915036	5.42218987589831	0.753837181832597	0.0288283703661593	0.163136688160098
Merged-chr13-93996654-4	chr13	93996553	93996753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61143.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	6.6018117444569	6.66024108990474	6.52276110574368	6.79157100805221	6.73307477489253	6.36125354457686	6.47285938335391	6.3781836721952	-0.217958647757723	0.323377391090834	0.634812855303633
Merged-chr7-112369184-3	chr7	112369082	112369282	+	889.666626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027587, intron 1 of 9)	intron (NM_027587, intron 1 of 9)	874.0	NM_027587	100504195.0	Mm.291129	NM_027587	ENSMUSG00000030771	Micalcl	4921517J23Rik	MICAL C-terminal like	protein-coding	4.04596602874904	4.08405109307949	3.6512623820858	4.00521526952651	3.5143040992459	3.9348445008811	3.51831881171501	3.75990006262854	-0.809539613815472	0.0945288841515614	0.336389933257874
Merged-chr19-8713828-11	chr19	8713706	8713906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008577)	promoter-TSS (NM_008577)	91.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	5.97591703406147	5.93145919340702	5.93360802705921	5.73843604863318	5.76702153806939	5.78613575681683	5.96745637685592	5.9727058184703	-0.0202807872982194	0.934859745674798	0.97635719558922
Merged-chr10-77621683-3	chr10	77621564	77621764	+	947.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019803)	promoter-TSS (NM_019803)	-657.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	3.83504777415788	3.50453950927383	3.73488613206962	3.91345759060082	3.83646117849331	3.557955915961	4.07452423865342	3.73281036606493	0.158569430877873	0.74355501282309	0.898960594151983
Merged-chr8-25720085-4	chr8	25719985	25720185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_121643)	promoter-TSS (NR_121643)	37.0	NR_121643	71910.0	Mm.385055	NM_028000	ENSMUSG00000031570	Plpp5	1810019D05Rik|2310022A04Rik|AW045471|Ppapdc1|Ppapdc1b	phospholipid phosphatase 5	protein-coding	6.18484235182365	6.162195597507	6.40387884604922	6.47368237003455	6.18595886821505	6.12412094113188	6.03007218763325	6.18151584498258	-0.288458234523105	0.212901706042789	0.517895168805567
Merged-chr1-45860580-4	chr1	45860487	45860687	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65007.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	5.40598151935411	5.23056639450223	5.72424424196694	5.65495936682609	4.90833717361763	5.08344435388287	4.99614124617388	5.34632328140127	-0.797324444167125	0.0108743978591826	0.0838237779097641
Merged-chr9-13245395-2	chr9	13245295	13245495	+	950.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033181, exon 1 of 1)	exon (NM_001033181, exon 1 of 1)	346.0	NM_001033181	77532.0	Mm.459434	NM_001033181	ENSMUSG00000079083	Jrkl	C030035D04Rik|HHMJG	Jrk-like	protein-coding	3.49261445555308	3.26403827918851	3.43579386869703	3.30762150590859	3.58996058998697	3.77022666292631	3.42284921860077	3.7893490014958	0.911569315914415	0.0663446151722534	0.274570810125346
Merged-chr10-28516297-3	chr10	28516188	28516388	+	971.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359356, intron 13 of 30)	intron (NM_001359356, intron 13 of 30)	-152072.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	3.45140747896211	3.98222665440003	3.77403487785392	4.07293217963533	3.28062451980153	3.36969310993967	3.65995978727093	3.32274833144381	-1.42466951097518	0.00871725662902199	0.0714762826399212
Merged-chr16-91367269-4	chr16	91367156	91367356	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5527.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	6.25831020169692	5.5304874539641	5.82918762739794	6.11636411183948	5.3038358532406	5.35366035024386	5.18233480428937	5.43592273795676	-1.09404137422088	0.000235219934099328	0.00415555216908813
Merged-chr12-73607678-4	chr12	73607557	73607757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	22861.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	6.09241881201102	6.56005277017224	6.19534905802753	6.55298926985825	6.03270082863459	5.87958043718408	6.18292785700383	6.02389857202641	-0.528857871079243	0.0327848518975984	0.177486535839607
Merged-chr10-81496461-4	chr10	81496362	81496562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134009)	promoter-TSS (NM_134009)	-99.0	NM_134009	103425.0	Mm.302791	NM_134009	ENSMUSG00000020238	Ncln	3100002P13Rik|AW120537	nicalin	protein-coding	8.76653622586396	9.01785255141345	8.79274039643731	8.87392791631869	8.82549592985509	8.95398977653322	8.93571380988935	8.95225434233654	0.0591868899156424	0.683688014285862	0.870394242877558
Merged-chr18-54900486-4	chr18	54900375	54900575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	89705.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	5.38260549314688	4.85087458887672	5.17764448255361	5.48617377019369	5.06684607886231	5.10964732166283	5.05342469681641	5.37975625512111	-0.189513281518719	0.561886329764086	0.805220702375282
Merged-chr11-106648513-4	chr11	106648331	106648531	+	954.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35501.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	4.10637566577623	4.01880925501501	3.68459881425555	4.22583427507113	4.3366072885664	4.0863710630068	3.78919105498049	4.05867519542315	0.144399642274433	0.75406714329941	0.903054650924944
Merged-chr5-88628784-3	chr5	88628705	88628905	+	881.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 8 of 13)	intron (NM_001359208, intron 8 of 13)	45292.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	3.81919215628662	3.57908210972147	3.76550094628735	4.10934185864929	3.83773805302377	3.82892560392739	3.85567335175525	4.40213074012753	0.430119885391589	0.381980597236429	0.684194353644149
Merged-chr11-80156318-4	chr11	80156200	80156400	+	809.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 2 of 10)	intron (NM_172133, intron 2 of 10)	2138.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	4.30102586257857	4.58870624415287	3.8156900830641	3.65217415988868	3.84807906775694	4.51124204910988	3.80071122800692	4.02961488860808	-0.170378291785309	0.744138358915135	0.89923574268619
Merged-chr13-51843014-4	chr13	51842897	51843097	+	948.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3678.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	4.39387153201102	4.53205416387884	4.34916053818988	4.65883084292105	4.5798269816269	4.32961240914778	4.46046642693376	4.70586232296777	0.0580579110007708	0.876313925877941	0.95350060274953
Merged-chr7-114526446-4	chr7	114526350	114526550	+	971.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 11 of 15)	Lx7|LINE|L1	36522.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	4.55965783436307	4.83703738864908	4.85790973542463	5.03609944380282	5.11100650677323	5.39032370110025	5.35298557846645	4.60426964952398	0.582902602750845	0.109441751730595	0.365262551996626
Merged-chr6-116135801-3	chr6	116135704	116135904	+	799.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 2 of 5)	intron (NM_177412, intron 2 of 5)	57570.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	3.99663135310627	3.50471474360802	3.48076148582745	3.60084113145964	3.68113575741393	3.47373256458233	3.46778144533038	3.35799034505236	-0.484498124183421	0.352022081143903	0.659242934613292
Merged-chr6-22363752-4	chr6	22363633	22363833	+	974.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7652.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	4.97730342725231	4.82084717727356	5.26412058700776	5.45571322561555	5.05912881610305	4.69687267653853	5.29291900043967	4.90154379404814	-0.300237320799844	0.396075160938016	0.695040527597433
Merged-chr10-75832469-6	chr10	75832394	75832594	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010361, exon 4 of 5)	exon (NM_010361, exon 4 of 5)	2387.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	4.34856111531144	4.42551856619168	4.34922267876463	4.49640236232422	4.53903934977029	4.5647930559648	4.3300857928364	4.34654703527776	0.0870277218559651	0.813828626730218	0.928107164238675
Merged-chr4-32170327-3	chr4	32170288	32170488	+	741.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	206281.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	3.19607133126086	3.39295088817667	3.43046443954596	3.19231783149058	3.2466602824806	3.54583779865573	3.46826951291814	3.31694784967049	0.332489353370605	0.526547776190458	0.783803651205536
Merged-chr3-95883219-4	chr3	95883108	95883308	+	740.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033302)	promoter-TSS (NM_001033302)	-980.0	NM_001033302	229599.0	Mm.331218	NM_001033302	ENSMUSG00000038550	Ciart	Chrono|Gm129	circadian associated repressor of transcription	protein-coding	3.78750482747044	3.81170351304842	3.62542666277067	3.57727907107894	3.70742219943665	3.8555164022992	3.91495038634908	3.92998069731333	0.455513756421819	0.313848360570035	0.625806439112938
Merged-chr17-56951069-3	chr17	56950947	56951147	+	825.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15659.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	3.56837505847026	3.87793384728815	3.0766617714774	3.44141933479275	3.44948360142575	3.57770108664902	3.39218271247799	3.34367164508797	-0.263932321804341	0.639155943606213	0.847469697514773
Merged-chr11-88958841-1	chr11	88958741	88958941	+	561.0	f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-3399.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	2.16871735783271	2.12855045299927	2.16886695834661	2.23209539973683	2.54245098646818	2.89125191809177	2.53042689693771	2.82905617724519	3.13526094922221	0.000619194778290557	0.00916292414219201
Merged-chr2-122312833-3	chr2	122312743	122312943	+	724.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305262, intron 3 of 9)	intron (NM_001305262, intron 3 of 9)	887.0	NM_001305262	213696.0	Mm.247121	NM_145395	ENSMUSG00000027224	Duoxa1	BC019755|Nip|Nip1	dual oxidase maturation factor 1	protein-coding	3.20469261278174	3.18285601886795	3.50797589390329	2.74429139323055	3.11950971854635	2.99475540425363	3.19229326837501	3.02060735351773	-0.382176000583837	0.544218251009156	0.795184841840149
Merged-chr10-17698099-4	chr10	17698000	17698200	+	987.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25128.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	5.6749470644653	5.31564293808362	5.62712918060862	5.58539859916555	5.13711682855427	5.72371802829166	5.38341833161606	5.46431767484912	-0.218605955931649	0.458057779564506	0.741035835529387
Merged-chr11-52297597-2	chr11	52297497	52297697	+	977.5833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14583.0	NM_001313981	21414.0	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	3.20703353612002	3.44890025299986	3.26496360351517	2.84631445483596	3.26729325479006	3.05826489236605	3.30637518987379	3.20576024313943	0.0413310948760419	0.944356850937516	0.980025502854549
Merged-chr13-35447879-1	chr13	35447779	35447979	+	577.0	f0_balb.idr	Intergenic	L1MB2|LINE|L1	-211983.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	2.8036290955605	2.64784318284934	2.68606980812743	2.73684154024222	2.32944273041089	2.58999347259017	2.40673742550204	2.74491139800462	-1.05171551570336	0.144857580691364	0.424036712956412
Merged-chr4-151071030-3	chr4	151070907	151071107	+	744.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 23 of 23)	intron (NM_001081557, intron 23 of 23)	-13054.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	3.5539452702617	3.48328710687273	3.45859742169879	3.45960441344816	2.82785483428456	3.09284410449124	3.04235760071562	3.05058416001962	-2.05325893094172	0.000735298606969482	0.0105307483994931
Merged-chr10-67297711-4	chr10	67297601	67297801	+	831.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12420.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	4.49437498481833	4.59594548943022	4.61101609283154	4.71996121751903	4.39459271279351	4.07451219310448	4.39169937220816	4.3647977641584	-0.685275623538677	0.0693668962810752	0.281658089583038
Merged-chr7-125623316-4	chr7	125623170	125623370	+	963.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021887, intron 2 of 8)	intron (NM_021887, intron 2 of 8)	19841.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	6.48792912903079	6.16795669429806	7.19159791475746	7.11546968177574	4.64992368641631	4.86218586533867	5.18849680431116	4.65094687170095	-3.33619069798462	1.73413530081282e-20	6.23404124124021e-18
Merged-chr8-46211066-4	chr8	46210974	46211174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007450)	promoter-TSS (NM_007450)	-12.0	NM_007450	11739.0	Mm.16228	NM_007450	ENSMUSG00000031633	Slc25a4	AU019225|Ant1|mANC1	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4	protein-coding	6.1293132430744	6.0666031331015	6.08935011315544	6.02696300418005	6.32245856424011	6.26470352767604	6.11898017532724	5.95331903076611	0.162784361626785	0.485468216195317	0.759349088660037
Merged-chr18-34859902-4	chr18	34859804	34860004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1303.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	7.96267981394571	8.25706002558361	7.95688302369097	7.89402608855103	8.00908345666981	8.23064372971673	8.4450911612187	8.12448427014472	0.237872770624373	0.188804734442888	0.487633707369135
Merged-chr9-13493079-3	chr9	13492991	13493191	+	625.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61730.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	2.9435346898458	2.73721952372904	2.82899921172254	2.9035914248537	2.74746635223169	2.80616474347403	2.75805951607106	2.63329362204091	-0.572412878207916	0.364943322646468	0.669647618330358
Merged-chr5-142629478-4	chr5	142629396	142629596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178398)	promoter-TSS (NM_178398)	-88.0	NM_178398	74781.0	Mm.29432	NM_178398	ENSMUSG00000029578	Wipi2	1110018O08Rik|2510001I10Rik	WD repeat domain, phosphoinositide interacting 2	protein-coding	7.41434897817041	7.27730327853616	7.04223053829582	7.02597559568508	7.55851824905222	7.43062185096304	7.31074858893591	7.18202278426926	0.257518355978979	0.19622721431648	0.497236651745317
Merged-chr11-75733455-4	chr11	75733362	75733562	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009536, intron 1 of 5)	CpG	575.0	NM_009536	22627.0	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	4.80011786989787	5.19022242328834	5.20927416919628	5.06812130242738	5.06745459753907	5.19430799625132	4.6536946280634	4.87545200612551	-0.217272721290535	0.515116111249188	0.777385138962536
Merged-chr5-143731719-4	chr5	143731635	143731835	+	860.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029749, intron 1 of 17)	CpG	545.0	NM_029749	76800.0	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	3.83463330021745	3.8667803041875	4.07533273099631	3.69267235376541	4.00091179919501	4.00846954831151	4.01295331184055	3.88467821447556	0.328497987755474	0.450486533230267	0.735338736614162
Merged-chr8-56313806-4	chr8	56313729	56313929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 4 of 6)	intron (NM_008278, intron 4 of 6)	19277.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	7.51467845042408	7.14555804709625	7.5505253639562	7.56756557343473	7.12026959793995	7.14096459620479	7.13959492390657	7.06253576278003	-0.462986532185903	0.0155567032256655	0.107610357521832
Merged-chr11-23846616-4	chr11	23846530	23846730	+	961.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48640.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	4.27340889344596	4.01404262608236	3.80363919489561	4.15105628518205	4.50653165936613	4.31025091070283	4.06797399876569	4.71088766623657	0.840772135218187	0.0496640742826665	0.230755758970747
Merged-chr12-91747936-2	chr12	91747836	91748036	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	38500.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	3.87209104338007	3.49973229529871	3.63315098348804	3.69915530889354	3.79098756282618	3.45174611723977	3.45213294380478	3.6311213014663	-0.260242693040429	0.600430658519694	0.826786119085537
Merged-chr11-116671609-4	chr11	116671501	116671701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027819)	promoter-TSS (NR_027819)	-59.0	NR_027821	66293.0	Mm.432051	NM_025472	ENSMUSG00000020812	1810032O08Rik	-	RIKEN cDNA 1810032O08 gene	ncRNA	7.23818427289286	7.4143899483664	6.86713025133007	7.00709467331971	7.3900609598828	7.40540783263864	6.94242237350366	7.24505964475536	0.155717575314537	0.471602130631338	0.749975827346634
Merged-chr11-98754208-4	chr11	98754108	98754308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178060, intron 2 of 8)	intron (NM_178060, intron 2 of 8)	12423.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	6.71601738399537	6.75501866667706	5.95827976990941	6.17288470590219	6.81195159739116	6.90623755189138	6.33372067380295	6.05129344990689	0.193676243382738	0.521454953765508	0.781432035905523
Merged-chr1-66701658-2	chr1	66701529	66701729	+	639.0	f0_balb.idr|f0_c57.idr	exon (NM_001310642, exon 2 of 7)	exon (NM_001310642, exon 2 of 7)	798.0	NM_001310644	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	2.97055883487771	3.28697949128792	3.11344498902633	3.22996335686351	3.32611880366995	3.58520956160362	3.64309484944064	3.46640727941375	1.20863236953008	0.02760248381712	0.15849784487749
Merged-chr3-87338132-4	chr3	87338024	87338224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-19757.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	7.41386318903886	7.68640694677035	7.41513244046796	7.45563316321229	7.52347765601912	7.5520198345569	7.40786547107891	7.85070583315146	0.12478229171559	0.506926171508056	0.772597481478011
Merged-chr8-83165412-4	chr8	83165291	83165491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027758)	promoter-TSS (NM_027758)	39.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	7.13992035091579	7.13468399563463	7.08457815028886	7.10606695989051	7.09030955787708	6.79043226371651	6.52715392755317	6.78038197805814	-0.404484458471332	0.0525055777702161	0.238774247387312
Merged-chr17-27204496-4	chr17	27204392	27204592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146075)	promoter-TSS (NM_146075)	-54.0	NM_146075	224640.0	Mm.29689	NM_146075	ENSMUSG00000044857	Lemd2	BC026588|Lem2|NET25	LEM domain containing 2	protein-coding	7.20433364105928	7.34197387741225	6.94479369073001	6.90521464175716	7.54038039906083	7.8060967244387	7.28669554604333	7.09536025606342	0.476509557298093	0.0347527212406096	0.184532931382719
Merged-chr2-36231164-4	chr2	36231046	36231246	+	901.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 2 of 10)	intron (NM_008969, intron 2 of 10)	720.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	4.44685250829692	4.18283639289326	4.49004983535629	4.61605980041596	4.71300678234019	4.39008158415567	4.73027842433878	4.56807047690286	0.351487970756939	0.349674710780759	0.657179883362987
Merged-chr13-68582112-4	chr13	68582014	68582214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131892)	promoter-TSS (NR_131892)	-10.0	NM_001308475	210009.0	Mm.205514	NM_172480	ENSMUSG00000034617	Mtrr	4732420G08|MSR	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein-coding	7.96314745332221	7.79023287066166	7.76317181647759	7.82130331060116	7.98266402495491	8.09281190396321	8.21874439839287	7.81326198312997	0.256989575533575	0.133015267864734	0.406114262671132
Merged-chr1-138614703-4	chr1	138614591	138614791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 1 of 9)	intron (NM_021605, intron 1 of 9)	5066.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	6.20872425736274	5.91651030761735	6.06959941587998	6.061922156237	6.34590637819863	6.1580402985148	6.21520166744203	6.02226080405382	0.206441154316779	0.378801357062007	0.681349402523103
Merged-chr8-25448132-4	chr8	25448022	25448222	+	949.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-70637.0	NM_001079909	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	4.9652863310464	4.93796264496094	4.79005682646436	5.07535689415056	4.78666007095866	4.57770284308022	4.90896920890921	4.6684291536463	-0.431243537047191	0.196923048410964	0.498200143206437
Merged-chr13-49220809-3	chr13	49220699	49220899	+	760.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-4773.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	3.83339036156464	3.45140586418	3.26737623484531	3.37871575579695	3.8653387688921	3.75449597014817	3.77055034484677	3.73641627084322	0.909700409578968	0.0654122586623576	0.272266249099056
Merged-chr6-48047761-4	chr6	48047662	48047862	+	682.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347139)	promoter-TSS (NM_001347139)	32.0	NM_001347139	72306.0	Mm.381553	NM_001081382	ENSMUSG00000071477	Zfp777	2500002G23Rik	zinc finger protein 777	protein-coding	3.50140162048306	3.3239603083082	3.50190018270246	3.61606358493439	3.13413801015982	3.39335439962993	3.32831450044967	3.2194341552489	-0.842580901200897	0.11507181673543	0.375410067073572
Merged-chr17-72904018-4	chr17	72903914	72904114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14291.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	6.92517516394138	7.06310988193351	7.19359021106919	7.43297073368635	7.26310248713411	6.86727972421165	7.13554135167313	6.93494520460225	-0.154061486998912	0.473247010961776	0.751076459932416
Merged-chr3-136725582-5	chr3	136725434	136725634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	55468.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	4.66571691142815	4.21342433444247	5.0613925222401	4.93993280567942	4.74559890911645	4.96206530242287	4.72545172288702	5.35764287806444	0.414714848970938	0.301658258192267	0.613778799474163
Merged-chr19-9071630-4	chr19	9071556	9071756	+	970.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104460, intron 6 of 6)	intron (NR_104460, intron 6 of 6)	16300.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	4.74183205540414	4.91492457012135	5.06158988102218	5.32270240279651	4.58928600046232	4.65763509719941	5.06730834005545	4.81750483985852	-0.509095450348588	0.154594645625717	0.439856588759361
Merged-chr8-70865802-4	chr8	70865684	70865884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	7706.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	7.58704870272716	7.82553494378161	7.27235934975233	7.11249150719132	7.54042549938924	7.944053848509	7.59378107942324	7.60044893641825	0.268718726389083	0.224862385896986	0.533284902067823
Merged-chr5-64414635-2	chr5	64414497	64414697	+	605.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	53345.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	3.15610164083398	3.19984241644501	3.15658004496587	2.65324645250309	2.90717296238595	2.7597543402898	2.78890921636032	2.72599935694541	-1.13473644547053	0.0936401497338943	0.334750249505744
Merged-chr13-14068220-4	chr13	14068121	14068321	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194262, intron 2 of 23)	T-rich|Low_complexity|Low_complexity	4437.0	NM_198122	94246.0	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	4.36915860685075	3.89194563367753	4.09674325532689	4.65423232720301	3.98282741181908	4.53993671095713	4.07954812539846	4.3670259531692	-0.105682948789233	0.819045064657685	0.930681321455107
Merged-chr12-116436373-4	chr12	116436298	116436498	+	981.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133762, intron 17 of 28)	Lx8|LINE|L1	30996.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	4.92030028663698	5.12005956874156	5.60692806366541	5.08137448236753	5.2691385556833	5.67932120650832	5.60194933974194	5.39396864680171	0.517266196249553	0.102572804377263	0.351827126326482
Merged-chr7-31111231-4	chr7	31111122	31111322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276269)	promoter-TSS (NM_001276269)	-225.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	7.70792928346944	7.87604404013857	7.77261371447487	7.38896414208495	7.75505717551068	7.87838737743304	7.71150066987041	7.56671615081973	0.0563209692144022	0.766776603354766	0.908716130899153
Merged-chr3-8691766-8	chr3	8691683	8691883	+	981.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-24745.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	3.57715481156171	3.39696396553478	3.77477429366103	3.5736356800823	3.44551520144945	3.32407696546917	3.45345159912947	3.86027535141388	-0.155809809582746	0.763412891460409	0.907170333361858
Merged-chr11-101302311-4	chr11	101302218	101302418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019584)	promoter-TSS (NM_019584)	-32.0	NM_001359821	56208.0	Mm.178947	NM_019584	ENSMUSG00000035086	Becn1	Atg6	beclin 1, autophagy related	protein-coding	6.31598111883591	6.15920687687176	5.99645844949503	5.61199057428548	6.36893329930323	6.47421630683294	5.98826715364933	6.41437087544289	0.452325734835924	0.0952466473080105	0.337769162691155
Merged-chr5-5559553-4	chr5	5559445	5559645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357031)	promoter-TSS (NM_001357031)	-4.0	NM_001357031	207704.0	Mm.323984	NM_153116	ENSMUSG00000040464	Gtpbp10	4930545J22Rik|BC034507	GTP-binding protein 10 (putative)	protein-coding	8.08079023492049	7.89452810767177	7.63742277391143	7.62433966851792	8.03979861459199	7.98137925664317	8.08637702246904	7.86677202823732	0.234208509942141	0.198461542766409	0.499992714139038
Merged-chr8-119862201-4	chr8	119862127	119862327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146219)	promoter-TSS (NM_146219)	-78.0	NM_146219	234796.0	Mm.86446	NM_146219	ENSMUSG00000031828	Klhl36	-	kelch-like 36	protein-coding	8.49537528626087	8.46119592287045	8.2113513050417	8.36481265215105	8.26492587860356	8.36430447691909	8.51834447009924	8.23577762719461	-0.04926072384456	0.759851122377591	0.905842932790046
Merged-chr5-90903229-2	chr5	90903127	90903327	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_009140)	promoter-TSS (NM_009140)	-672.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	7.05037574070427	7.19467361051451	7.0857116888396	6.82914921564859	6.56513128613461	6.93075745979639	6.73372579954124	6.04487188308254	-0.615590593695266	0.0125858314384603	0.0929012647472954
Merged-chr1-93166036-1	chr1	93165936	93166136	+	780.0	f0_balb.idr	Intergenic	L1MB3|LINE|L1	-2387.0	NM_001310428	381284.0	Mm.193346	NM_001310428	ENSMUSG00000084989	Crocc2	E030010N08Rik|Gm976	ciliary rootlet coiled-coil, rootletin family member 2	protein-coding	3.33938868433191	3.59071914149038	3.28338617418867	3.52624915804518	3.21532215676382	3.27288435292907	3.15211625713871	3.02835441725333	-1.03210624141533	0.0637887071980077	0.268263887171881
Merged-chr13-9599531-4	chr13	9599426	9599626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 17 of 36)	ORR1E|LTR|ERVL-MaLR	164284.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	5.89272752705701	5.69515662244641	5.87195747488984	5.65891986583443	5.71290042978138	5.63490545329032	5.57423613622328	5.82294913244011	-0.134201634516231	0.602886686549919	0.827863197473409
Merged-chr10-85388921-1	chr10	85388821	85389021	+	616.0	f0_c57.idr	intron (NM_028709, intron 1 of 16)	intron (NM_028709, intron 1 of 16)	2107.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	2.42770590309519	2.37396149459721	2.42790406772036	2.10226908353637	3.38997669883719	3.3425239042661	3.15355492162737	2.9410234322809	6.65868901927321	6.77146000266533e-12	6.26769507840983e-10
Merged-chr18-80707770-4	chr18	80707663	80707863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 1 of 9)	CpG	410.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	5.2756152995563	5.19283198717906	5.36476188317996	5.02575447624898	5.08130467768485	5.06900055090126	5.4196900244606	5.68417476020068	0.230012455305908	0.471162835921025	0.749734937523649
Merged-chr19-56721215-4	chr19	56721136	56721336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1136.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	6.14632670577327	6.61628757574427	6.01974976693155	6.0639759573402	6.11403440701289	6.54383656040707	5.98897789689322	5.84841986332728	-0.131146175190595	0.638058194906501	0.847040716325261
Merged-chr2-32966223-3	chr2	32966120	32966320	+	938.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	2919.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	3.90727381723128	3.57833034169321	3.7693333403449	3.74304079792918	3.89162132313479	3.67380353746074	3.36185925909737	3.49685347992257	-0.367423244175809	0.466789092923968	0.746491290418458
Merged-chr2-31974398-4	chr2	31974320	31974520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172268)	promoter-TSS (NM_172268)	-30.0	NM_172268	227720.0	Mm.289686	NM_172268	ENSMUSG00000001855	Nup214	BC039282|CAN|D2H9S46E	nucleoporin 214	protein-coding	8.29565836982484	8.29071801387923	7.63260860907505	8.0085248276843	8.43492359346019	8.56055101151922	8.19569225389763	8.40783172428994	0.409605876918997	0.0379671011161799	0.194982704931354
Merged-chr11-83657586-3	chr11	83657486	83657686	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4998.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	3.91220869727705	3.78377143085203	3.68039475929957	3.50121281902208	3.68949437130597	3.57374378446231	3.50423071999277	3.32986020274965	-0.578764925947052	0.255028252544342	0.566579980269474
Merged-chr2-154406794-4	chr2	154406666	154406866	+	936.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009228, intron 1 of 7)	MIR3|SINE|MIR	1318.0	NM_009228	20648.0	Mm.1541	NM_009228	ENSMUSG00000027488	Snta1	AW228934|Snt1	syntrophin, acidic 1	protein-coding	4.8527593852876	4.5068466047831	4.59160245311365	4.91578868592085	4.85341469025066	4.59142661135602	4.61118940315371	4.62951886542887	-0.11759916140081	0.742559773614374	0.898514054068236
Merged-chr2-129360317-4	chr2	129360219	129360419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9583.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	6.85230203627088	6.79060904594913	6.84035379557652	6.89551958991898	6.68863811677196	6.48291497899055	6.40570359968063	6.48741476006057	-0.455639524854105	0.0259613589300612	0.152342586879969
Merged-chr3-30993268-4	chr3	30993165	30993365	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2506.0	NM_008857	18759.0	Mm.291554	NM_008857	ENSMUSG00000037643	Prkci	2310021H13Rik|AI427505|PKClambda|Pkci|Pkcl|Prkcl|aPKClambda|mKIAA4165	protein kinase C, iota	protein-coding	4.63724886921652	4.88195860255153	4.27706725741754	4.33421329186404	4.66744629511771	4.77170075689542	4.86342138491654	4.63496301620122	0.402807334035146	0.281343421365587	0.59344034883054
Merged-chr1-177236918-4	chr1	177236822	177237022	+	925.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 1 of 12)	B3|SINE|B2	11845.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	5.52860883106364	5.89380511640978	5.20473925656234	5.06854621803586	4.82986032358561	4.67032274480336	4.86817518566998	4.84841800867748	-1.23805112068407	0.000549981436206591	0.00833094885034027
Merged-chr7-88231347-4	chr7	88231256	88231456	+	975.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46729.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	5.18644741267393	5.11720919623255	5.4198684862517	5.18063070521114	5.5027298005857	5.29658602859677	5.06316558714881	4.89939086646584	-0.00416583951519109	0.989559912254191	0.995799485308711
Merged-chr12-112623987-4	chr12	112623917	112624117	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	3970.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	5.49996891201965	5.24296640367722	4.93047775906522	5.17272466385627	5.67050279242217	5.45217304422572	4.86720487058835	5.30455070172462	0.255095163288539	0.448019090948474	0.73332468018769
Merged-chr2-91187620-4	chr2	91187420	91187620	+	721.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355279, intron 7 of 9)	intron (NM_001355279, intron 7 of 9)	-4473.0	NM_145527	228355.0	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	2.78583786803438	2.64256420987929	2.85424142693128	2.82405609460162	2.7100539869389	3.09347939667592	2.908305679926	3.43122566338728	1.18160743659193	0.0701453867710849	0.283541284853146
Merged-chr1-161131479-4	chr1	161131331	161131531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039482)	promoter-TSS (NM_001039482)	48.0	NM_001039482	226541.0	Mm.255165	NM_144876	ENSMUSG00000026705	Klhl20	AI504637|D930050H05Rik|Kleip|mKIAA4210	kelch-like 20	protein-coding	7.11200455382628	7.00150381582029	7.31240855694677	7.24317170923446	6.76212792230894	6.61691523375435	6.78535128144009	6.97657227650992	-0.531894556996325	0.00788325695095715	0.0665073303913926
Merged-chr12-17770750-4	chr12	17770645	17770845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	79936.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	5.40064938813971	5.1259868801718	5.09715250250503	5.36485055323383	5.20985157046914	5.12922574533417	5.20212251623514	5.28478981482691	-0.0994853408029299	0.736333673762386	0.895957197789619
Merged-chr19-5806563-2	chr19	5806463	5806663	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3891.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	3.27496989129409	3.53364744751251	3.49997736657553	3.1132981925483	3.22813317888504	3.38900737961131	3.48524454327693	3.44541468575557	0.103589992712314	0.84747103590743	0.942302928724103
Merged-chr2-32835907-3	chr2	32835806	32836006	+	849.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113569, intron 1 of 19)	intron (NM_001113569, intron 1 of 19)	11326.0	NM_009295	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	3.29421327860839	3.0222669773495	3.34691410399509	3.21721219515339	3.24394492593331	3.03515078013181	2.84760021708272	3.34493533027903	-0.338582913675817	0.570581884509983	0.810162536555677
Merged-chr2-13415673-4	chr2	13415593	13415793	+	851.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 27 of 66)	intron (NM_001081084, intron 27 of 66)	76183.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	3.88987285553253	3.82908848864988	4.24184491388039	3.90073948204791	3.90688835481832	3.7890781320686	3.87435273559239	3.98546836163158	-0.21377115902637	0.628880658778956	0.841823003934767
Merged-chr12-55299545-4	chr12	55299446	55299646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021529, intron 2 of 13)	intron (NM_021529, intron 2 of 13)	-3091.0	NM_025373	66132.0	Mm.383213	NM_025373	ENSMUSG00000021023	1110008L16Rik	Kiaa0391|Mrpp3|mKIAA0391	RIKEN cDNA 1110008L16 gene	protein-coding	7.33554749859075	7.28463287247707	7.55591450312476	7.61692313368531	7.25943126081687	7.32375712805774	7.41900314027216	7.66737732722235	-0.0523697874175575	0.78803192753451	0.917932066973263
Merged-chr3-116008245-4	chr3	116008148	116008348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023214)	promoter-TSS (NM_023214)	-49.0	NM_001163514	58193.0	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding	7.37389384339662	8.13362425211467	7.2618760495319	6.72232066776523	7.46479050460896	7.71831989458374	6.97678364850282	6.51689681365232	-0.307106111920775	0.544964463974464	0.795639850437806
Merged-chr12-82470778-4	chr12	82470681	82470881	+	966.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	-146144.0	NM_001310478	50779.0	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding	4.61577894735481	5.24565409368119	5.06397762202788	4.57936433771954	4.79596588560313	5.10463322490988	4.97494857206803	4.81892853601027	0.0516757906253249	0.886969142839864	0.957570439068097
Merged-chr9-56636397-5	chr9	56636292	56636492	+	842.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311076)	promoter-TSS (NM_001311076)	-744.0	NM_001311076	235402.0	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	3.38904281967735	3.44840000784567	3.44366269939603	3.39594588111395	3.22791354798838	3.44592804213878	3.20132052465296	3.3876608111321	-0.370133132945591	0.47510524752516	0.752077675107718
Merged-chr5-3356081-4	chr5	3355978	3356178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	12185.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	6.14744150256674	6.09435054680438	5.44400638525886	5.48550916319711	6.15415931844252	6.39422142127174	5.82617042475645	5.33953342104959	0.251697180405557	0.461512796129059	0.743289746901092
Merged-chr8-68206913-4	chr8	68206806	68207006	+	907.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69622.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	4.52782878390043	4.68241217702465	4.47989811317166	4.98311315858734	5.39135573660391	4.84345349006502	5.04396661438598	5.32077305108664	0.915117061540485	0.0122616323321147	0.091284460596966
Merged-chr1-39418060-3	chr1	39417952	39418152	+	923.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018775, intron 2 of 19)	intron (NM_018775, intron 2 of 19)	50201.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	3.80588485690088	3.47350995351306	3.93357036850944	3.43678538566975	3.14120390546967	3.37344349877529	3.54640206423216	3.50377880281811	-0.922995747933296	0.0915703202022857	0.330677387206768
Merged-chr15-33115011-4	chr15	33114900	33115100	+	740.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176073, intron 1 of 7)	intron (NM_176073, intron 1 of 7)	31871.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	3.22581275713185	3.23325732383755	3.50857672810177	3.3579688932041	3.42353034994366	3.45934206839676	3.58966568390725	3.28595414509291	0.373840411889716	0.470057002407967	0.74885746888454
Merged-chr17-4922823-4	chr17	4922711	4922911	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72263.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	5.3607620009269	5.52992325093991	5.47468051677998	5.39166330325207	5.62146095825327	4.95800021720131	5.42007425100617	5.29750421804414	-0.135239434565551	0.654513164293353	0.855650311701959
Merged-chr18-5806513-4	chr18	5806420	5806620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	213873.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	7.82741060688722	8.03018503915303	7.82144999872598	7.55628318282051	7.50910948457609	7.50467600792638	7.51680501469898	7.03071359272563	-0.535311011402382	0.0086543606231187	0.0711080150978836
Merged-chr18-49642938-4	chr18	49642813	49643013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112688.0	NM_001170960	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	6.17435138907631	6.05793989292973	6.57949126546874	6.42514480579173	5.99099277702966	6.01446062236062	6.16343932740791	6.11000064656942	-0.397930807696533	0.10198920739527	0.350581435900321
Merged-chr6-70709500-3	chr6	70709446	70709646	+	940.322205	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82629.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	3.82653533956082	3.7783753441444	3.47027825600748	3.67700098909937	3.03285877762287	3.32664769919119	3.56809543939578	3.77949140853353	-0.782790521364996	0.168988432727286	0.461531258272409
Merged-chr15-8737475-4	chr15	8737374	8737574	+	896.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-26667.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	4.4100217093006	3.83168901358822	4.49034127489997	4.03564073397358	4.71821825673639	4.3146149874687	4.26203779364602	4.44823539892187	0.591405838714093	0.168247321775623	0.460195831251857
Merged-chr11-109365510-4	chr11	109365418	109365618	+	704.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359034, intron 1 of 2)	intron (NM_001359034, intron 1 of 2)	-1864.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	3.44766579906681	3.65961624949949	3.56461615123155	3.41921246722616	3.75666442043778	3.98352188373197	3.65627955870142	3.38417288307708	0.596135527152885	0.230346103697585	0.53971870463126
Merged-chr4-137871622-4	chr4	137871512	137871712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	9375.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	7.72730534390438	7.9099761673576	7.91386277277595	7.90581572201635	7.07527592921337	7.01790323569087	7.15358853792057	7.02106736188937	-1.06752190077807	8.05438658282533e-10	5.26449203470087e-08
Merged-chr4-107364316-4	chr4	107364211	107364411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3473.0	NM_028355	72787.0	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	6.07128943322795	5.78340938553199	5.59701429134395	5.65929969751994	5.46277187859203	6.01949131084458	5.64818688080791	5.53693252139091	-0.179246026510819	0.529404675605423	0.785614700149936
Merged-chr6-29696123-4	chr6	29696014	29696214	+	902.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301407, intron 1 of 7)	intron (NM_001301407, intron 1 of 7)	1900.0	NM_146173	232670.0	Mm.225289	NM_146173	ENSMUSG00000001763	Tspan33	1300010A20Rik|Pen	tetraspanin 33	protein-coding	4.81614751687356	5.80065521877496	4.73750278131552	4.92381498474214	5.06250316152221	4.91626040701703	4.63136397641723	4.24692076093087	-0.771907886222181	0.0828236848912617	0.312648868629355
Merged-chr11-70221087-5	chr11	70220931	70221131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172371)	promoter-TSS (NM_172371)	-37.0	NM_172371	69309.0	Mm.93266	NM_172371	ENSMUSG00000044367	Slc16a13	1700007D07Rik	solute carrier family 16 (monocarboxylic acid transporters), member 13	protein-coding	6.17252272340561	6.24203580806379	6.03659684559966	5.35088923321447	5.92500534879794	5.9117587810919	5.73095909770057	6.05276558536207	-0.112523376229155	0.71065188277877	0.884203089852994
Merged-chr4-129811576-4	chr4	129811473	129811673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-8906.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	5.75282212598952	6.41777422431998	5.72781626115374	5.87571973365917	5.82202301029243	6.35935985756762	5.5898655271765	5.74974719747612	-0.107993560925444	0.725864958464315	0.890921883682774
Merged-chr10-128374646-3	chr10	128374574	128374774	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2450.0	NM_172790	237615.0	Mm.440177	NM_172790	ENSMUSG00000014498	Ankrd52	6430544C07|G431002C21Rik	ankyrin repeat domain 52	protein-coding	3.75532573297134	3.22580107919189	3.58713150164566	3.18147436628097	4.04322389942091	4.24999935968915	3.97750986013918	3.80535025405268	1.76475612479111	0.000496639702243373	0.00767150984504798
Merged-chr9-66946379-2	chr9	66946282	66946482	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001361106)	promoter-TSS (NM_001361106)	-31.0	NM_001361106	67941.0	Mm.30120	NM_026467	ENSMUSG00000036781	Rps27l	1810034D23Rik	ribosomal protein S27-like	protein-coding	5.57173455661948	5.85329470628223	5.54546240911762	5.2747632304091	5.5409807043678	5.60681222995483	5.67179187538176	5.74442843865166	0.128679669513581	0.65063301502454	0.85336762012257
Merged-chr2-13537886-3	chr2	13537778	13537978	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010067, intron 1 of 10)	intron (NM_010067, intron 1 of 10)	6786.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	4.16167052831694	3.8154455138004	3.86335726680654	3.4747459960225	4.37073804744287	4.09604291449203	4.38311717637581	4.24560593891332	1.19004821831877	0.00828945445841961	0.06883176032948
Merged-chr5-108629179-2	chr5	108629078	108629278	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_028223)	promoter-TSS (NM_028223)	599.0	NM_001359924	231580.0	Mm.276647	NM_153569	ENSMUSG00000062234	Gak	D130045N16Rik	cyclin G associated kinase	protein-coding	5.0955742984861	5.29463929134505	5.75735219742471	4.972724297178	5.03086736566835	5.16641845622837	5.00083433189149	5.50428505558744	-0.212843576466717	0.540463319449163	0.792791916938885
Merged-chr17-46160282-4	chr17	46160204	46160404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019581)	promoter-TSS (NM_019581)	-728.0	NM_019581	56055.0	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	7.50169221573405	7.40539291885934	7.16144955004056	7.41815305310774	7.49497676092746	7.36245304849525	7.47493000204213	7.38414281714426	0.0701791109158359	0.694847895456952	0.876148420739244
Merged-chr17-35210346-4	chr17	35210228	35210428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4977.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	7.98714877827747	8.27023915588157	7.45437444588885	7.24251553613981	7.92771875010959	7.93527775630006	7.5866319120068	7.79137049309873	0.0231491636407903	0.926116671562876	0.972803130988503
Merged-chr3-105019893-4	chr3	105019787	105019987	+	967.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	33066.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	5.22570666966921	4.86626974578084	5.19497486232548	5.38062334585703	5.08159545781546	4.9224365047836	5.59592848287726	5.52646554645449	0.220803301271803	0.513927332465447	0.776778578505469
Merged-chr14-74774360-3	chr14	74774243	74774443	+	823.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 19 of 19)	intron (NM_001033439, intron 19 of 19)	42046.0	NM_016903	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	3.72595117699187	3.40182504688506	3.53725686459629	3.52897834404088	3.23061751426465	3.22983040985079	3.30291788803792	3.42888094243269	-0.893555675232936	0.0892814450320315	0.326079530808916
Merged-chr12-59207115-5	chr12	59206969	59207169	+	944.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033156, intron 1 of 3)	B1F|SINE|Alu	12414.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	3.23714476340615	3.92922979315424	3.49176068290699	3.92938349691644	3.3716889705119	3.60760620028765	3.68901902315547	3.43084922065509	-0.507894706885425	0.359332057464282	0.665266442591906
Merged-chr10-96605393-4	chr10	96605278	96605478	+	692.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11623.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	3.68197903010092	3.44990737095509	3.3359366546531	4.07658283423449	3.74120326942133	3.69315310480233	3.44963291591047	3.57495149348043	-0.196174169564672	0.719945521598699	0.888028373825666
Merged-chr3-137956055-4	chr3	137955950	137956150	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	25499.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	5.52859466850787	6.09861516414112	6.17434761312225	6.00208122698562	6.09290608302586	5.92565375068538	5.40943532217524	5.46436568205202	-0.335843345686032	0.272697065130334	0.584138684652025
Merged-chr19-10940942-3	chr19	10940838	10941038	+	731.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023731)	TTS (NM_023731)	3778.0	NM_009962	14764.0	Mm.470721	NM_009962	ENSMUSG00000034117	Ptgdr2	Crth2|Gpr44|Grp45	prostaglandin D2 receptor 2	protein-coding	2.94031477373095	3.00924479881896	2.7251645880382	2.4775475952035	3.35496297637592	3.11879430109154	3.27465054880277	3.23556343322066	1.95725332315413	0.00266865841133409	0.0291651216122139
Merged-chr11-102437772-4	chr11	102437654	102437854	+	952.4750369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008175)	TTS (NM_008175)	7432.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	4.92533032084254	4.61003374971207	4.58763772135288	4.57791285197974	4.90499882394052	4.92214160554761	4.76393380202285	4.81979086499304	0.381297275428628	0.256264709176046	0.567820499764717
Merged-chr10-99264680-5	chr10	99264579	99264779	+	865.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026268, exon 2 of 3)	exon (NM_026268, exon 2 of 3)	1448.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	4.12208519041469	4.0579061488198	3.54390658287301	3.83714184262444	3.85500416495897	4.01265989276681	3.87460122327623	4.12009574805822	0.165692155854995	0.718065940996108	0.887335796877561
Merged-chr2-169958419-4	chr2	169958317	169958517	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	4770.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	4.06759417276602	4.39318096356038	4.66597910346308	4.35821005188133	4.36920263050813	4.48774436890786	4.2505096942974	4.35628335989697	-0.0435906843737908	0.911644829805299	0.966984475532229
Merged-chr2-38932006-3	chr2	38931925	38932125	+	719.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172854)	promoter-TSS (NM_172854)	45.0	NM_172854	241327.0	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	4.17168863975325	3.95544323906697	4.39796762789374	3.95753626579346	3.74694856425494	3.6671240782635	3.66135583150353	3.94496464290138	-1.02820207336846	0.0273021145633615	0.157431724927536
Merged-chr11-107340946-3	chr11	107340860	107341060	+	780.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	Lx8|LINE|L1	129760.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	3.73416468113506	3.21413305332712	3.43873749515005	3.47549013821914	3.36840261271631	3.49618357577051	3.42536508532332	3.32091714656658	-0.251062863435344	0.631829968415589	0.843565602967326
Merged-chr14-30255943-3	chr14	30255794	30255994	+	800.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	97592.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	2.95968737972163	2.96490281249712	3.02009100657805	2.71950615398358	3.22604849251123	3.00550498309681	2.75391180596282	3.01848920654535	0.444483892514784	0.47219005082465	0.750435671036873
Merged-chr1-173426536-4	chr1	173426443	173426643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 1 of 8)	intron (NM_001013779, intron 1 of 8)	5939.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	6.29423871836338	6.61803172078004	5.97438916364051	6.29100224924221	6.26677694979898	6.52664747338996	6.38831001695849	6.54637768457456	0.167167469651676	0.48852748347612	0.761344727658502
Merged-chr7-35235490-4	chr7	35235397	35235597	+	794.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20152.0	NM_001024707	435965.0	Mm.333783	NM_001024707	ENSMUSG00000001802	Lrp3	-	low density lipoprotein receptor-related protein 3	protein-coding	4.1820588836398	3.88398949623872	4.00463308890039	3.51515172022452	3.69050636997603	4.02920383109947	4.12130007598027	4.17998920457656	0.292694942776323	0.543135297496323	0.794315192204876
Merged-chr10-20123559-4	chr10	20123427	20123627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 23 of 29)	intron (NM_008580, intron 23 of 29)	-25393.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	6.01908990388876	6.35084533314157	6.11973725574917	6.22201329631031	5.58936529782544	5.89454119283109	5.60708928920465	5.27986853339439	-0.937713022305745	0.000423667750600787	0.0067373205585374
Merged-chr9-56100178-4	chr9	56100082	56100282	+	863.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	ORR1F|LTR|ERVL-MaLR	10206.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	4.9669863971377	4.8824758663746	4.9352769643691	4.80183878075553	4.62194012154028	4.6862794570137	4.48831286321419	4.86424406232502	-0.462932471601952	0.171847010728011	0.465124394984604
Merged-chr16-17562076-4	chr16	17561977	17562177	+	985.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029053)	promoter-TSS (NM_029053)	192.0	NM_001159561	18440.0	Mm.8032	NM_011028	ENSMUSG00000022758	P2rx6	P2rxl1|P2x6|P2xm	purinergic receptor P2X, ligand-gated ion channel, 6	protein-coding	6.79883469768514	7.12893093942184	6.64696216323553	6.31672814004725	5.37803456674424	5.29944861378152	5.39141673893861	5.64077808252406	-2.07110605635698	9.41728714196408e-13	1.0064807411682e-10
Merged-chr7-45661002-4	chr7	45660901	45661101	+	971.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271993, intron 1 of 2)	intron (NM_001271993, intron 1 of 2)	5393.0	NM_018876	14344.0	Mm.290046	NM_018876	ENSMUSG00000055978	Fut2	-	fucosyltransferase 2	protein-coding	5.12644745766008	5.25913871978961	5.1273137833143	5.1666792436088	5.05108630667822	4.88611794579579	5.03546918375427	5.56185317670659	-0.0238238476238715	0.94091653503341	0.978676631829834
Merged-chr15-58034178-5	chr15	58034058	58034258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029418, exon 1 of 6)	exon (NM_029418, exon 1 of 6)	136.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	6.08758532947431	6.44736237400696	6.32804091276245	5.82951850696074	6.1451787397128	6.7039075787637	6.14189727392021	6.69744098149415	0.391114182942283	0.157119214233188	0.443500264079873
Merged-chr6-50458109-4	chr6	50458011	50458211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1757.0	NM_001347213	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	5.76294444483526	5.42764056722713	5.40673925304176	5.53796316094774	5.28288072750008	5.42720451259451	5.37984845476341	5.61914844985715	-0.196961857603728	0.484244774459124	0.758389817184668
Merged-chr16-29597296-3	chr16	29597139	29597339	+	946.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133752, intron 5 of 28)	intron (NM_133752, intron 5 of 28)	17905.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	3.6635359067117	3.73055425287294	3.61204741998952	4.11207778524857	3.31069548063957	3.49464780107047	3.36891266764227	3.49945157143459	-1.30160965032481	0.0128272240448877	0.0942141141565434
Merged-chr11-74523768-4	chr11	74523673	74523873	+	880.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	66385.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	3.61765378689822	3.8598184612029	3.67668077519821	3.76915311606246	4.08624862268092	3.85176030936332	4.05048364654315	3.88559080888328	0.674818757419251	0.127156263913957	0.396685902921902
Merged-chr8-26950046-3	chr8	26949964	26950164	+	784.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-27272.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	4.51173285010193	4.17693124982211	4.02795280178669	4.62102924793995	3.87704540963761	3.61068549948949	3.90967870840682	3.75399957253537	-1.53662889114444	0.00109523613269727	0.0144580513147735
Merged-chr18-4325347-4	chr18	4325243	4325443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	27610.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	5.08256097771386	5.73249258809938	5.83046909888745	5.44625695276143	5.99257867615357	5.88664721808524	5.80064338471506	5.70787963193915	0.505555639701416	0.0803674077640645	0.307304416719761
Merged-chr12-54203862-4	chr12	54203768	54203968	+	855.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028133)	promoter-TSS (NM_028133)	6.0	NM_028133	112407.0	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding	4.53024640129466	4.83473082696769	4.65802715332643	4.65707569247822	4.87708794068884	4.47022311132679	4.9214190821797	4.97396854785657	0.321055216045953	0.356884943111193	0.663204275532246
Merged-chr2-130491801-4	chr2	130491679	130491879	+	911.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	41501.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	6.48900957309848	6.95330708785441	6.41687611749703	6.50517989864968	4.81190490030384	4.90140087296537	4.72891008849624	5.07600905987813	-2.96761951036398	5.91316519511478e-22	2.55086779044288e-19
Merged-chr3-142561722-4	chr3	142561620	142561820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289492, intron 2 of 11)	intron (NM_001289492, intron 2 of 11)	1364.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	6.03142677072024	6.57823702191773	6.09317162796389	6.12449527021442	5.72945342610583	5.51628103867107	5.56268140149405	5.69894032851838	-0.945953276639327	0.000425978924335901	0.0067680254141306
Merged-chr16-3744868-4	chr16	3744759	3744959	+	937.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148924, intron 1 of 5)	intron (NM_148924, intron 1 of 5)	760.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	4.33365567653001	4.41184819249304	4.28852695014197	4.31754125788348	4.93218394865483	4.46307037769401	4.22290513509569	4.23852518193865	0.407276072652841	0.320271605546706	0.632115478349849
Merged-chr12-40248915-3	chr12	40248822	40249022	+	756.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25558.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	3.55467199182299	3.57612653822754	4.03043934009982	3.74119637898322	3.697368585208	3.48429428114337	3.59749931306176	3.71519776055226	-0.33121628661598	0.498894070360742	0.767966717867805
Merged-chr11-61564221-3	chr11	61564128	61564328	+	972.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252189, intron 1 of 8)	intron (NM_001252189, intron 1 of 8)	15459.0	NM_010148	13855.0	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	3.89913293245027	3.56000146290362	4.12302233635173	4.09257996269926	3.79125755816636	3.55211995340463	4.02019858456247	3.89739095328706	-0.324477672850182	0.503667687598518	0.770507049123075
Merged-chr9-22125803-4	chr9	22125708	22125908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007388)	TTS (NM_007388)	4790.0	NM_007388	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	6.34809172043945	6.27963888164864	6.34921377003545	6.4101381024564	6.15848071620605	6.31272714988942	6.38573073079721	6.21336300045027	-0.130865173445908	0.550329754467164	0.798579499168602
Merged-chr8-122564704-6	chr8	122564589	122564789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-3326.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	6.31223518424389	6.06152099136931	5.8877933170965	6.05817694391327	6.08910950659414	6.30320109079431	5.70545590482731	6.08366475690755	-0.0390340385437941	0.878782418358018	0.954708519232108
Merged-chr5-108636394-4	chr5	108636283	108636483	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359426, intron 1 of 9)	intron (NM_001359426, intron 1 of 9)	6573.0	NM_001359426	72392.0	Mm.258324	NM_028223	ENSMUSG00000013495	Tmem175	3010001K23Rik|AI504381|mTMEM175	transmembrane protein 175	protein-coding	4.69242410459287	4.94672308260498	4.64960100484331	4.97851885600493	4.86132847925857	5.10173100907972	5.18845600733861	5.26656120811578	0.517629183700702	0.120557854607736	0.38436217160966
Merged-chr2-160085484-2	chr2	160085384	160085584	+	820.333374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	68831.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	4.30051499902636	3.89043937866618	3.80609270050141	4.12267857687094	3.73168058428293	3.86989428787361	3.94451797402127	4.0067507479441	-0.442280417040462	0.324951895221858	0.636488090877592
Merged-chr16-8784923-3	chr16	8784823	8785023	+	772.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-45177.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	4.12112900057562	3.82919587921595	3.52145659816662	3.78229887324263	3.60440026630711	4.07411002679523	3.79023787192016	3.69742926823122	-0.0880744850740539	0.856166869078181	0.945849783860249
Merged-chr7-16012786-2	chr7	16012689	16012889	+	850.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13294.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	3.60163230488515	3.50198763999723	3.26364455573721	3.08255160437996	3.88288331739746	3.44120204080986	3.43032467513671	3.32480222236449	0.588452383503432	0.292194534428928	0.604578784515469
Merged-chr14-67272546-4	chr14	67272431	67272631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360202, intron 6 of 15)	intron (NM_001360202, intron 6 of 15)	37887.0	NM_001360202	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	6.29367817952788	6.44483539580317	6.21902716073492	6.28660178408765	6.30161181109915	6.33521718365809	6.3336417675853	5.83019396025139	-0.14219154724382	0.551241795723927	0.798837168776829
Merged-chr4-141076829-4	chr4	141076755	141076955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149724, intron 1 of 8)	intron (NR_149724, intron 1 of 8)	1502.0	NR_149724	66147.0	Mm.21187	NM_025383	ENSMUSG00000028923	Necap2	1110005F07Rik|AA409105|C78898|NECAP-2	NECAP endocytosis associated 2	protein-coding	6.23829727972953	6.74185472293843	6.4764324107552	6.46320364925235	6.31208428307915	6.35526993925563	6.49196524911758	6.33138291326199	-0.181219379780199	0.422600379819794	0.714839748072846
Merged-chr5-100675120-4	chr5	100674999	100675199	+	831.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027978)	promoter-TSS (NM_027978)	-843.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	4.36193851929829	4.21015249832309	4.05034082683719	3.92809500802207	4.23870661008868	4.31982195722486	4.08243094153493	4.19102711533755	0.194460482360676	0.636185392281847	0.846064411527807
Merged-chr9-65676025-3	chr9	65675930	65676130	+	875.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010952)	promoter-TSS (NM_010952)	-518.0	NM_010952	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	3.96984212207869	3.96895641047325	4.01723161137183	3.36675985381392	3.96464672150461	4.04534695087806	3.80336766738594	4.05977500921215	0.353370670479057	0.467999237030351	0.74728586771964
Merged-chr10-122097372-4	chr10	122097271	122097471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153059)	promoter-TSS (NM_153059)	-269.0	NM_153059	216395.0	Mm.236764	NM_153059	ENSMUSG00000034620	Tmem5	6330415D21Rik	transmembrane protein 5	protein-coding	8.89645257346462	9.00101284048536	9.01133798674084	9.00918484749481	9.03039394859149	8.9675237640623	9.26281602750672	8.80906714345923	0.0587656905872902	0.706324682535304	0.882026045231235
Merged-chr1-170555084-4	chr1	170554975	170555175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 1 of 9)	intron (NM_001109985, intron 1 of 9)	2035.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	5.51818444073103	5.41155775829918	5.6007560410956	5.91932913142778	5.62929319975132	5.66623738363244	5.34382306994327	5.74558348051173	-0.0704328954164749	0.807555870361482	0.925791122379966
Merged-chr5-43423213-4	chr5	43423113	43423313	+	864.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92356.0	NM_001135172	109323.0	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding	4.2901676001545	4.39029255240184	4.5098570276477	4.65458872172271	4.27079900857425	4.36862264778268	4.7401279893855	4.62232338152138	0.0627599987510105	0.871399730653253	0.951627503185851
Merged-chr4-121041109-4	chr4	121040991	121041191	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007741, intron 2 of 31)	intron (NM_007741, intron 2 of 31)	1525.0	NM_007741	12840.0	Mm.269384	NM_007741	ENSMUSG00000028626	Col9a2	AI427499|Col9a-2	collagen, type IX, alpha 2	protein-coding	5.30755129958079	5.34102547925696	4.87967750206305	5.10608694543287	5.4214079593105	5.48301238057563	5.66843765474516	5.44820413033959	0.602995671718944	0.03963164816346	0.200564598978096
Merged-chr3-109335674-4	chr3	109335597	109335797	+	935.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-4986.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.75597486343628	4.9114034154759	4.71467890970575	5.39127379115072	5.13961667811225	4.76152235255865	4.99382505478476	5.33997162723205	0.154539910108839	0.676001271895371	0.867014726144001
Merged-chr13-45401920-1	chr13	45401820	45402020	+	585.0	f0_balb.idr	intron (NM_153789, intron 2 of 6)	PB1D9|SINE|Alu	12178.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	3.11242816242178	3.11631261201767	2.8892196835487	2.90608471288037	2.9032109674997	2.79675040312434	2.61254185678002	2.61784686754881	-1.22446815682248	0.0683263660894531	0.279168957687916
Merged-chr8-60982772-3	chr8	60982652	60982852	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173873, intron 1 of 12)	CpG	559.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	4.36817965143446	3.75720390931905	4.19969627482306	4.21648823269224	4.17732414547055	4.32613964597663	4.08837165135799	4.32586722649693	0.190814849098402	0.652737485418373	0.854764223296605
Merged-chr5-36712043-4	chr5	36711916	36712116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15995.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	6.49803639812102	6.55407971030416	6.6332098441928	7.20549944480046	6.64862966075943	6.87194353524359	7.0468470851403	6.61249237061541	0.0388483795333026	0.878936444893384	0.954734116882343
Merged-chr17-83708465-2	chr17	83708365	83708565	+	826.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001171053, exon 2 of 14)	exon (NM_001171053, exon 2 of 14)	2302.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	3.03811165207483	2.98356340768499	3.09506778871022	3.03287660467068	3.13534685964728	3.02440661686615	2.84356076981692	2.71058886547286	-0.386756448286996	0.530521193098616	0.786592955268324
Merged-chr10-100160000-4	chr10	100159889	100160089	+	814.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144168.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	4.51314465227891	4.03204346385477	4.73714864130998	4.87479493778122	4.38853169456983	4.37151838334518	4.64464000758628	4.3371239958971	-0.331767082261096	0.429237650579348	0.720143399871997
Merged-chr17-45758120-4	chr17	45758024	45758224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	URR1A|DNA|hAT-Charlie	23618.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	8.28608487800467	8.32432009735566	8.55313919003329	8.12683317839871	8.04435327997331	8.18437467153824	8.27607638063945	8.08910480080651	-0.224421708748641	0.187576611706137	0.486022192298464
Merged-chr8-3631722-4	chr8	3631611	3631811	+	977.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357168, intron 1 of 18)	intron (NM_001357168, intron 1 of 18)	602.0	NM_011503	20911.0	Mm.7247	NM_011503	ENSMUSG00000004626	Stxbp2	C79054|Munc-18-2|Munc-18b|Munc18b|Sxtbp2|Sxtp2|Unc18-2|Unc18b|muSec1	syntaxin binding protein 2	protein-coding	4.8828932055532	5.1504687167883	5.10355425863618	5.29710030571857	5.05931229318306	4.93943689044233	5.59215284859833	5.3441973044746	0.233951038519766	0.478649948012473	0.75462533555373
Merged-chr6-30354945-4	chr6	30354863	30355063	+	993.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36057.0	NM_172735	232679.0	Mm.29780	NM_172735	ENSMUSG00000039130	Zc3hc1	1110054L24Rik|AU018540|AU019789|HSPC216|Nipa	zinc finger, C3HC type 1	protein-coding	5.20017953110411	4.87799457787423	5.28544432781053	4.9822488001757	5.06004828040263	4.55795178067326	4.98869678851222	4.9754329549096	-0.328376432440481	0.331327183662146	0.642467227210669
Merged-chr2-38536054-4	chr2	38535974	38536174	+	946.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159631, intron 1 of 9)	MIR3|SINE|MIR	24198.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	4.85620199006022	4.87246101376869	4.49739662794346	4.76138235303629	4.65339853218438	4.53321147301927	4.93305586187372	4.98566634121574	0.0626002968529286	0.858809539318719	0.946576014812915
Merged-chr3-146118229-4	chr3	146118132	146118332	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3559.0	NM_134160	171166.0	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	4.89985651706319	4.86371820038318	5.22583081445088	5.58944426673777	5.56098341623422	5.4318862128091	5.23138041839075	5.50679168326277	0.423023133297048	0.213021344220693	0.518150779492352
Merged-chr4-94601597-2	chr4	94601497	94601697	+	729.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172695, intron 1 of 13)	B2_Mm2|SINE|B2	1650.0	NM_172695	18786.0	Mm.490101	NM_172695	ENSMUSG00000028577	Plaa	2410007N06|AI536418|AU018445|AW208417|D4Ertd618e|PLA2P|PLAP|Ufd3	phospholipase A2, activating protein	protein-coding	3.28047834287742	3.15924494951116	3.1607116798531	2.73651432827491	3.12134118843938	3.39712360349907	3.56931548965215	3.33521783609652	1.02087401141064	0.0857060850349972	0.318830890571578
Merged-chr1-151287725-4	chr1	151287626	151287826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56760.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	6.13700932746642	6.09656513423055	6.3127804217639	6.35820944747632	5.96860885235476	6.29366696724822	6.51027899867151	6.36144227325278	0.0763951931188414	0.754031261985926	0.903044989089611
Merged-chr6-48539562-4	chr6	48539462	48539662	+	925.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347164, intron 2 of 2)	intron (NM_001347164, intron 2 of 2)	1993.0	NM_133764	76252.0	Mm.30214	NM_133764	ENSMUSG00000039347	Atp6v0e2	0610006O14Rik|NM9.2	ATPase, H+ transporting, lysosomal V0 subunit E2	protein-coding	4.08973249383484	4.21433720489456	4.09031893414749	3.72670896448993	5.05923645944662	5.00930219204015	5.05229291988132	4.95986221180523	2.28122727347993	5.25576915725181e-10	3.54261735647752e-08
Merged-chr3-88465277-4	chr3	88465183	88465383	+	974.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4101.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	5.2521707588417	5.31778668354469	4.85437767414469	5.03465721987903	5.67551978262687	5.45794115513604	5.42690142026606	5.2178983322412	0.614082217990755	0.0442429509364283	0.214521049366759
Merged-chr11-72795688-4	chr11	72795579	72795779	+	962.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045536)	promoter-TSS (NM_001045536)	160.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	4.77088930325802	4.96876069516434	5.31805322862742	5.02830048494476	4.78198144625946	4.82418012832269	4.86356853195841	5.05489380850098	-0.303448992124702	0.360149444283735	0.66568674445473
Merged-chr2-163760766-3	chr2	163760620	163760820	+	875.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10481.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	4.68108099247107	4.19543767463029	4.46324294589827	4.99918060968735	4.35037353117913	3.86147188586783	3.9720406478777	4.14673919986389	-1.25230112537759	0.00627372656806681	0.0560782318143422
Merged-chr4-120589998-2	chr4	120589887	120590087	+	707.25	f0_c57.idr|f1_c57bl6.idr	intron (NM_001101603, intron 1 of 2)	intron (NM_001101603, intron 1 of 2)	1242.0	NM_001101603	667063.0	Mm.90231	NM_001101603	ENSMUSG00000091297	Gm8439	EG667063|Gm1664	predicted gene 8439	protein-coding	2.99206150100754	3.08815406012972	2.99237359467617	2.71950372648429	3.67908089281301	3.37804457699198	3.74127747894774	3.5806356978135	2.58232184048807	5.05655301086555e-06	0.000149370863997072
Merged-chr8-36866912-3	chr8	36866796	36866996	+	829.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 2 of 17)	L3|LINE|CR1	85546.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	3.66037720133731	3.57084196590927	3.85831660130945	4.32841055243453	3.58143964039327	3.47808108062945	3.64608593835352	3.22142418216297	-1.26586244467101	0.0237395719820591	0.143345690033168
Merged-chr19-5567605-4	chr19	5567559	5567759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033448)	promoter-TSS (NM_001033448)	-365.0	NM_001362046	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	6.55671001593052	6.39049013484234	6.18841453988498	6.0514005988807	6.74645925313739	6.93954876749339	6.35376630638692	6.95957244755026	0.685646586701632	0.00531207126182994	0.0497379532157055
Merged-chr8-95806969-4	chr8	95806777	95806977	+	985.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015574)	promoter-TSS (NR_015574)	47.0	NR_015574	319960.0	Mm.386996	NR_015574	ENSMUSG00000074136	4930513N10Rik	-	RIKEN cDNA 4930513N10 gene	ncRNA	4.41923322351758	4.23678629434264	4.73870050346576	4.47357162022628	4.34883537776719	4.90897542231994	4.35459196681155	4.90010951859152	0.381017407103167	0.340566057099792	0.649687804950314
Merged-chr13-93989443-4	chr13	93989324	93989524	+	883.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68372.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	4.13401286393067	4.4763261757534	4.54329037390232	3.65393410334933	4.46967085639908	4.46325701852631	4.73392579076476	4.7211689061111	0.838645845354769	0.0595021580441299	0.257114072109712
Merged-chr4-53150709-4	chr4	53150645	53150845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	9150.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	7.17459575338576	7.14812499750176	7.50077446353193	7.35882272598729	7.37185750743685	7.13953268668297	7.54981684445245	7.3437182034785	0.076351106738767	0.693260190597137	0.875262817171833
Merged-chr10-84335656-4	chr10	84335578	84335778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104793.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	6.73992729789549	6.86064143163382	6.9202207007287	6.78133720958147	6.17405867389646	6.43943335198138	6.3797454940577	5.65204642603913	-0.927097770025492	0.000173642575087963	0.00323520483034428
Merged-chr11-120351135-3	chr11	120351027	120351227	+	854.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_038126)	TTS (NR_038126)	2449.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	3.37867897355477	3.25150122770398	3.37915921864131	3.15324861682825	3.01819213982163	3.18809975841116	3.19432522199205	3.66540317381781	-0.00474144502529186	0.993390929594512	0.997694053753355
Merged-chr18-32834192-3	chr18	32834081	32834281	+	964.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045381, intron 1 of 4)	intron (NR_045381, intron 1 of 4)	-3044.0	NM_001110016	225348.0	Mm.38816	NM_144863	ENSMUSG00000038299	Wdr36	5730444A13Rik|Ta-wdrp	WD repeat domain 36	protein-coding	4.23080164969137	4.24488975626978	4.15587318005839	4.2638042376037	2.99640683021225	3.35313549440096	3.22262034775239	3.23099323038252	-4.25649150439671	8.17001757120638e-09	4.39889319743494e-07
Merged-chr15-80977876-4	chr15	80977814	80978014	+	988.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357669, intron 1 of 20)	CpG	149.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	4.9305964705742	4.50810137327871	5.02767389331304	4.42508371738407	4.61499369756128	4.96453202599952	4.52462223600054	5.16950141094648	0.216418996743625	0.579882488573624	0.815494836491523
Merged-chr13-24519188-3	chr13	24519086	24519286	+	911.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63003.0	NM_001286100	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	3.88881256209229	4.36855968414348	4.27818352389216	4.40448706324714	4.37696390999655	4.01098769346455	3.98186189653098	4.04677092540976	-0.336471937606728	0.441658715194149	0.728581294354415
Merged-chr2-121457104-4	chr2	121457009	121457209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026318)	promoter-TSS (NM_026318)	21.0	NM_026318	67693.0	Mm.330525	NM_026318	ENSMUSG00000027245	Hypk	2310003F16Rik|HSPC136	huntingtin interacting protein K	protein-coding	5.88527303650269	5.62784864824838	5.29695186472227	5.77903360716917	5.58951892644732	5.87619285126874	5.54373890817917	5.69814809881091	0.0072853946549965	0.979254675659208	0.992625937440005
Merged-chr4-135948389-4	chr4	135948264	135948464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357529, exon 1 of 9)	5' UTR (NM_001357529, exon 1 of 9)	958.0	NM_001357530	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	5.26238613154815	5.66532729694363	5.19658534839658	5.58031865753808	5.41076287159692	5.43934396479042	5.44519857077208	5.49601045599024	-0.0190730850444044	0.947293383341357	0.981119696272421
Merged-chr10-59261755-4	chr10	59261623	59261823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	39801.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	6.68431444605799	7.26913841226471	5.93884547993105	5.7321223474658	6.71403035121053	7.09800203345095	6.51416223257336	5.98542612629566	0.108439645041944	0.853816329091303	0.944905950148447
Merged-chr12-98737528-3	chr12	98737382	98737582	+	731.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146199)	promoter-TSS (NM_001146199)	-77.0	NM_001146199	24000.0	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	3.81311473954502	3.57118029286793	4.1469456784109	3.62315680421885	3.45572348027403	3.33562703212552	3.69893810450478	3.71233084767105	-0.750436501930255	0.149140315688383	0.431184018629893
Merged-chr11-94327966-4	chr11	94327882	94328082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146024)	promoter-TSS (NM_146024)	-19.0	NM_027799	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	6.52922549265532	6.7466685204418	6.17048457601053	6.02330575270698	6.64280058805908	6.42789361398878	6.34825671705405	5.88835310452974	-0.0454620096004259	0.872800822693337	0.952312982992352
Merged-chr7-80230589-6	chr7	80230517	80230717	+	905.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291275, intron 2 of 6)	intron (NM_001291275, intron 2 of 6)	2188.0	NM_001291276	23991.0	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	3.79553935250979	3.32389359574582	3.55890676044115	3.1691247028899	3.20631628366547	3.56758758700927	3.31941177555314	3.6569359439924	-0.0964808311112124	0.863196836291983	0.948557392167294
Merged-chr3-59262939-4	chr3	59262841	59263041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357008)	promoter-TSS (NM_001357008)	44.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	6.56887295662631	6.61080217345253	6.57003719442329	6.8054854946541	6.47896644336346	5.59301535646078	6.28464013411187	6.06610478345239	-0.721481948288172	0.00668058340262166	0.0587929334835814
Merged-chr9-116173899-4	chr9	116173801	116174001	+	822.267822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	1462.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	4.22061567206719	4.27083618393161	4.64030242339141	4.30461750685477	4.14965117977919	4.04037874133885	3.84457527450107	4.26301550926264	-0.699529827976239	0.0968602326502344	0.34090261569477
Merged-chr5-31201208-4	chr5	31201110	31201310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177901, intron 1 of 2)	intron (NM_001177901, intron 1 of 2)	832.0	NM_001177901	101023.0	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	5.25412169155981	5.31266557456782	5.22420863823438	5.17939082398578	5.74660219654924	4.78084551314312	5.16708142051962	5.08945412197929	0.0474948888029848	0.891481416988884	0.959385213525176
Merged-chr18-38962906-3	chr18	38962805	38963005	+	718.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 4 of 4)	intron (NM_001033789, intron 4 of 4)	-30240.0	NM_001361073	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	4.00398939535097	4.27930598532251	4.05221899204854	4.20384474798303	3.85871767687807	4.07730892879025	3.98764012619142	3.73414399581172	-0.620257756905265	0.150809719709685	0.433734091850809
Merged-chr5-16538207-4	chr5	16538123	16538323	+	983.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15272.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	5.71073184680635	5.8551391920062	6.3735905519782	5.70625210563892	5.53161799606382	5.1420709599037	5.60604326573586	5.54866780377093	-0.764384745454159	0.0121923702831627	0.0909114523764133
Merged-chr3-39182930-3	chr3	39182830	39183030	+	671.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	295990.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	2.60203094287505	2.4685123283742	2.60226505414255	2.50361789364441	3.41432798078849	3.00322551020247	3.39802740925946	2.95096647000277	3.14286816155701	7.75314579619734e-06	0.000219427898460251
Merged-chr15-9132762-4	chr15	9132644	9132844	+	951.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	7710.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	4.29821831282704	4.51296578499238	5.00976990432842	4.73317550843543	4.41460699345742	4.42833696038701	4.50685792814673	4.7540769136548	-0.300182685331914	0.438858187566225	0.726734768100838
Merged-chr8-26978086-4	chr8	26977987	26978187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101502, intron 1 of 1)	CpG	751.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	6.0666267153091	6.21014367361162	6.5032257489433	6.32088561544093	6.48988912468444	6.22312237418716	6.54714622134108	6.5301587633082	0.253843016124017	0.266849792970196	0.578471186655265
Merged-chr19-29436913-2	chr19	29436813	29437013	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 2 of 5)	intron (NM_021396, intron 2 of 5)	25994.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	2.84237084920688	2.8620982530567	2.77654012934559	2.69756099163771	2.95052997201468	3.01435772839214	3.01104820088639	2.96419553744752	0.869545192273096	0.140092960857689	0.416157580026199
Merged-chr17-17910315-4	chr17	17910187	17910387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	22463.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	8.14420586609157	7.99618841924989	8.0375226108494	8.2884096379669	8.70637927672304	8.57999647309561	9.19984197788557	8.55451803619909	0.835862658531789	1.94088133301695e-05	0.000495161263092523
Merged-chr7-84679464-4	chr7	84679373	84679573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360579)	promoter-TSS (NM_001360579)	-77.0	NM_001360581	65098.0	Mm.209349	NM_022985	ENSMUSG00000030629	Zfand6	3110005P07Rik|Awp1|Za20d3	zinc finger, AN1-type domain 6	protein-coding	6.63278191263708	6.39148957997282	6.50474653713218	6.95839964454561	6.79616700660022	6.41956569442972	6.7711593960319	6.430211285358	-0.0458711416240556	0.849855867180102	0.943294572454113
Merged-chr14-8111756-4	chr14	8111659	8111859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	13548.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	6.68515547256566	6.73458214465454	7.05308763295668	7.27464138302725	7.02510087646225	7.15473933006488	7.54614187626166	7.29185087367058	0.399580443386613	0.08580671061943	0.319053223380892
Merged-chr19-4299758-4	chr19	4299675	4299875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	6447.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	5.40847937500005	5.31973516191835	5.70306055123685	5.53280351367583	5.62101541025157	5.52402180701752	5.49650988045404	5.81176988103686	0.208005855783232	0.449208627922575	0.734381150850983
Merged-chr11-100609054-4	chr11	100608942	100609142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019795, intron 1 of 13)	MTD|LTR|ERVL-MaLR	11126.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	6.14977609224451	6.60910845984297	6.37008733983861	6.59186755496131	6.46388347579159	6.4908290747513	6.33750607418553	6.7686566774907	0.0980714117262393	0.6759614170484	0.867014726144001
Merged-chr12-91738563-4	chr12	91738455	91738655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 3 of 6)	ORR1D2|LTR|ERVL-MaLR	47881.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	7.6267266667346	7.36485683788319	8.07681239425385	8.23447413121803	7.01084605893217	6.82846441287461	7.39341775011699	7.02836085135361	-1.05960867482581	1.69988012510229e-05	0.000442559500455947
Merged-chr8-42194081-3	chr8	42194007	42194207	+	907.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	366840.0	NR_045497	69966.0	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	4.96075064358942	4.86330106364316	4.84167050067437	5.55717625299087	3.19961032075398	3.55120593640994	3.56674208219422	3.65329078581174	-5.88812122588984	4.20131830509837e-11	3.40987041777191e-09
Merged-chr12-40585090-4	chr12	40584964	40585164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	139011.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	8.03400569186467	8.23383951522294	8.07423185241977	8.09728485684494	7.96848113349092	8.05143666643801	7.91550776841666	7.65679651541082	-0.265024138295046	0.116824177484301	0.378180286026698
Merged-chr11-4596832-4	chr11	4596720	4596920	+	961.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2005.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	4.9766545439804	5.11679236632245	4.72246128265963	4.91503955248659	5.19624852096802	4.31337803962557	4.95318267488403	4.678502984961	-0.198246148459585	0.604519171459009	0.828485859893348
Merged-chr7-109528519-2	chr7	109528419	109528619	+	632.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001326, intron 14 of 19)	intron (NM_001001326, intron 14 of 19)	8387.0	NR_028079	100302499.0	Mm.482651	NR_028079	ENSMUSG00000065016	Snora3	MBI-28	small nucleolar RNA, H/ACA box 3	snoRNA	2.97412487993621	2.81952327588691	2.78662782787497	2.79728540059144	2.82665621119368	2.95943180483868	2.96325667578846	3.08386143086096	0.5116786725929	0.390557463137766	0.69058015678842
Merged-chr9-99119957-3	chr9	99119854	99120054	+	777.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	20257.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	2.97681085965878	3.0860844236634	3.61680751394195	3.79799287418324	3.16811940304943	3.36003938118319	3.29446015563952	3.36217863537299	-0.439579232045231	0.482301052746877	0.757206984982019
Merged-chr2-127113994-3	chr2	127113915	127114115	+	913.283325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144818, intron 12 of 17)	intron (NM_144818, intron 12 of 17)	19939.0	NM_144818	215387.0	Mm.29786	NM_144818	ENSMUSG00000034906	Ncaph	A730011O11Rik|Brrn1|CAP-H|HCAP-H|mCAP-H	non-SMC condensin I complex, subunit H	protein-coding	3.78812309021569	3.73090943311081	4.18117139287302	3.79224492437242	3.58900603536871	3.85640194418397	3.49214730624204	3.78646296646054	-0.581665127356302	0.228022858802536	0.536809626813485
Merged-chr17-26537762-4	chr17	26537650	26537850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23762.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	5.13139075695338	5.44549205243444	5.03479088289591	4.92629141993684	4.91244024257298	5.03010299599564	4.97639336692365	4.8110645049842	-0.405078171965253	0.217276074820104	0.524128817744799
Merged-chr4-128668117-3	chr4	128668020	128668220	+	873.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	13418.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	3.22758010990253	3.00672555500767	3.61491699327148	3.20103826917806	2.89051778169526	2.94508075378759	3.15815432426152	3.16850544974737	-0.923489564402107	0.129720772880542	0.400906041293221
Merged-chr12-30912226-4	chr12	30912135	30912335	+	913.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021330)	promoter-TSS (NM_021330)	566.0	NM_013709	24057.0	Mm.218624	NM_013709	ENSMUSG00000020669	Sh3yl1	AI314953|Ray|YSC84	Sh3 domain YSC-like 1	protein-coding	4.35442453814595	4.01986860280865	4.10226339983348	4.22375072254795	4.13077808943181	3.96609205791275	4.17357923056836	3.84301462228862	-0.369092690823921	0.382142625072414	0.684238214631303
Merged-chr11-104367953-4	chr11	104367842	104368042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 5 of 14)	B1_Mm|SINE|Alu	74349.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	6.83146005944336	6.87159143671036	6.67799948525889	6.85555757485234	6.57697196300751	6.45462240973134	6.41591922286675	6.56393032697647	-0.44109631474812	0.0299331759039662	0.167002157678979
Merged-chr4-155943167-2	chr4	155943078	155943278	+	772.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039157)	promoter-TSS (NM_001039157)	-635.0	NM_001039158	140499.0	Mm.371673	NM_021402	ENSMUSG00000023286	Ube2j2	1200007B18Rik|2400008G19Rik|5730472G04Rik|AL022923|NCUBE-2|Ubc6|Ubc6p	ubiquitin-conjugating enzyme E2J 2	protein-coding	3.23921061633506	3.02158756608767	3.01841861256582	2.94956137148994	3.05563929705161	2.92864464773619	3.22607691871427	2.82256443106565	-0.15414753140884	0.796993181731903	0.921466077162776
Merged-chr11-76477784-1	chr11	76477684	76477884	+	633.0	f1_balb.idr	intron (NM_001346670, intron 3 of 21)	intron (NM_001346670, intron 3 of 21)	-9319.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	3.29884970340395	2.978991671242	3.0434153804146	2.90575372088539	2.67858303739902	2.59323108004164	3.08590180149139	2.72227789511626	-1.26078734458484	0.0657605121654869	0.273028114332608
Merged-chr11-120698169-2	chr11	120698069	120698269	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026877, intron 7 of 15)	intron (NM_026877, intron 7 of 15)	15598.0	NM_016665	20892.0	Mm.259716	NM_016665	ENSMUSG00000025144	Cenpx	Stra13	centromere protein X	protein-coding	3.29179113870605	3.3015390539613	3.12062186973742	2.96451274871332	3.3769121727085	3.29226129568936	2.98304275585267	2.99095699804581	0.0304406588440913	0.958740329045905	0.985261653135995
Merged-chr11-51938897-4	chr11	51938810	51939010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-28721.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	6.59265937485014	6.14263686179763	6.69607346223148	6.83737716765636	6.35113344679381	6.05640959852232	6.46571070347602	6.40948452956461	-0.395050423095383	0.115757053155602	0.376472232777237
Merged-chr1-131911449-1	chr1	131911349	131911549	+	1000.0	f0_c57.idr	intron (NM_001145804, intron 1 of 6)	intron (NM_001145804, intron 1 of 6)	991.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	5.07403579718707	4.74958310135337	5.07489010970787	4.91495260816417	5.31447203626858	5.37563693431501	5.26507521484409	5.13714915319515	0.613027990830064	0.0426509580526046	0.209861229311927
Merged-chr13-37994208-4	chr13	37994137	37994337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025965)	promoter-TSS (NM_025965)	-29.0	NM_001360842	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	7.51018794695554	7.3667468634207	7.18293156483638	6.88200197888748	7.97669416849378	8.02251484381	7.96088993232495	7.71209845802149	0.899675135377519	9.81066726065148e-06	0.000270349781241158
Merged-chr5-135744272-4	chr5	135744171	135744371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172541)	promoter-TSS (NM_172541)	-99.0	NM_172541	215210.0	Mm.11688	NM_172541	ENSMUSG00000039886	Tmem120a	2010310D06Rik|Tmpit	transmembrane protein 120A	protein-coding	7.29557239151997	7.03683627038807	7.23305016442808	7.33478792949458	7.48085739017902	7.3542734887182	7.12991432048961	7.08985029589764	0.0631281642325487	0.748639548734734	0.901023223134367
Merged-chr12-4488565-4	chr12	4488455	4488655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11373.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	7.33297802043153	6.32838298301005	7.34334549724268	7.40775882425503	6.23411402774939	6.26032690072319	6.81441867609705	6.27725877595442	-1.06615483862099	0.000268658546144742	0.00463471804557358
Merged-chr3-69976362-1	chr3	69976262	69976462	+	696.25	f0_c57.idr	Intergenic	L1MEc|LINE|L1	-31251.0	NM_001018031	229389.0	Mm.331071	NM_001018031	ENSMUSG00000027788	Otol1	Gm414	otolin 1	protein-coding	3.38754334937773	3.50345781039002	3.5202589109694	3.04919542176298	3.9773751936177	4.07639828358276	4.31768814523346	3.94693898887133	2.25437159746432	5.50450037419143e-06	0.000161569002942091
Merged-chr12-26426484-3	chr12	26426369	26426569	+	726.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11207.0	NM_080563	108089.0	Mm.214932	NM_080563	ENSMUSG00000020642	Rnf144a	Rnf144|UIP4|Ubce7ip4	ring finger protein 144A	protein-coding	3.6780085795304	4.03163729812678	3.67851720655865	3.90679462206022	3.53864595949052	3.42980177767614	3.71484911754885	3.56658855249004	-0.848263386837026	0.0822822749955697	0.3113851605185
Merged-chr11-116131135-4	chr11	116131041	116131241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178802)	promoter-TSS (NM_178802)	-13.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	6.58080286166319	6.40475753706555	6.51406733932262	6.9074776864536	6.59588573134019	7.08988114525396	6.92855678598595	6.98303238401229	0.384873912086084	0.100401392371002	0.347845742631733
Merged-chr3-51338413-6	chr3	51338318	51338518	+	938.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	L1MB8|LINE|L1	2226.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	3.7552720151054	3.79091507202682	4.08302579789221	3.77390991917758	3.47297622857179	3.92897433235692	3.68691280552009	3.9505122051132	-0.254141591977373	0.595168545406533	0.823783168849173
Merged-chr14-67934225-4	chr14	67934126	67934326	+	850.229126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177780)	promoter-TSS (NM_177780)	-654.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	4.27445692004955	4.3412320894718	4.45445095303745	4.4800954430128	4.66378412502609	4.62611029930225	4.58984230490821	4.22362724364026	0.329404471295213	0.380594200767938	0.682959506520613
Merged-chr10-126978588-4	chr10	126978500	126978700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113470)	promoter-TSS (NM_001113470)	-117.0	NM_001113470	52468.0	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	7.40389110686889	7.39146506803538	7.26923138103054	7.35143077898339	7.59453490583842	7.50056414826489	7.55182135153026	7.62593763263035	0.286545949043071	0.0892763754732566	0.326077746808853
Merged-chr18-82857060-4	chr18	82856965	82857165	+	981.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_125720, intron 2 of 2)	MIRc|SINE|MIR	1168.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	5.35726631240782	5.7818468539449	4.98691889148843	4.62301166344461	5.81975323853179	5.64430123091348	5.20906102446837	5.05932815494367	0.38165311432928	0.334423599626855	0.645011968934814
Merged-chr2-132597414-4	chr2	132597313	132597513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033469)	promoter-TSS (NR_033469)	-783.0	NR_033468	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	7.30162820118498	6.93485525675606	7.41039540805185	7.28794890166135	7.11947136395155	7.01693669483596	7.33569438572056	7.12289842297672	-0.122806613449096	0.539195747292107	0.791983989773924
Merged-chr9-74905072-4	chr9	74904948	74905148	+	938.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43127.0	NM_008262	15379.0	Mm.303355	NM_008262	ENSMUSG00000043013	Onecut1	D9Ertd423e|HNF-6|Hfh12|Hnf6|Hnf6b|OC-1|Oc1	one cut domain, family member 1	protein-coding	4.35600065024112	4.49950835969803	4.62574991364404	4.63852791699205	4.69200697351758	4.9843758952261	4.89033740906163	4.77515466262773	0.611724150345799	0.0785777929970799	0.303312837729889
Merged-chr13-30986141-7	chr13	30985997	30986197	+	797.892883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12050.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	3.40717715538448	3.37090715123177	3.29604580427223	3.10479103234007	3.28931352026578	3.28566531359663	3.28373287929676	3.50815789860909	0.198190400335623	0.709361803648229	0.883493680172832
Merged-chr6-50588475-2	chr6	50588375	50588575	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027564, intron 4 of 9)	intron (NM_027564, intron 4 of 9)	8115.0	NM_027564	70821.0	Mm.157323	NM_027564	ENSMUSG00000029828	4921507P07Rik	TISP74	RIKEN cDNA 4921507P07 gene	protein-coding	3.45490162240801	3.37816974988674	3.13801611561315	3.27471192116124	3.38210837458838	3.87756867166074	3.44170282588435	3.70855253986522	0.988447861616496	0.0597156910258265	0.25767732798569
Merged-chr2-128806782-4	chr2	128806690	128806890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11513.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	7.09528594078409	7.40085508945842	7.19987379093534	7.30035680921425	6.83039334120662	7.32032930363542	7.10763537687154	7.05511254289244	-0.243415938836346	0.225941593858889	0.534543381939136
Merged-chr4-129346713-4	chr4	129346576	129346776	+	828.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025970, intron 6 of 6)	intron (NM_025970, intron 6 of 6)	10650.0	NM_025970	67106.0	Mm.36575	NM_025970	ENSMUSG00000057572	Zbtb8os	2010001H09Rik|2310028N13Rik|AI851226|Arch|Archm	zinc finger and BTB domain containing 8 opposite strand	protein-coding	3.86731577282048	3.92731103126915	3.96628628496418	3.46345183767458	4.23418516772482	3.8821492694988	3.80022916310806	4.01029884336885	0.538690284266525	0.254532219547461	0.565927925672817
Merged-chr18-84589113-4	chr18	84589013	84589213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 1 of 8)	CpG	391.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	5.95102208919677	6.00269493590839	6.41566272167469	6.091341483556	5.71736026668268	5.85604872002184	5.94381137991385	5.92520091126354	-0.42198674518278	0.0938814944525621	0.335232650049258
Merged-chr2-148876141-2	chr2	148876041	148876241	+	821.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009976)	promoter-TSS (NM_009976)	-629.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	3.66539190595288	3.73857216313218	3.6039159779456	3.81914930071975	4.07199553070997	4.29055546735206	3.9697881007618	4.24137095287911	1.16066972500761	0.00889993811361209	0.072572882917722
Merged-chr2-102982978-4	chr2	102982881	102983081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81316.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	6.42021494456199	6.9410281864445	7.02507182376767	5.94976410746142	6.52197848215113	6.54466608801541	6.29743247144495	6.0283068698645	-0.409034998019705	0.178899245234832	0.474931723727067
Merged-chr15-64174688-4	chr15	64174588	64174788	+	779.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	-114240.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.71483345110367	3.77347207172464	3.82507150641124	3.96613380247694	4.10100684835967	4.18799632495151	3.80972058286598	3.8744354934383	0.469121417709097	0.293423394258007	0.605994016535346
Merged-chr5-140536808-3	chr5	140536734	140536934	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28233.0	NM_030022	77998.0	Mm.160040	NM_030022	ENSMUSG00000036586	Grifin	E130101O17Rik	galectin-related inter-fiber protein	protein-coding	3.34194891380885	3.42955361086368	3.14427902383996	3.24571420636686	3.50501532005993	3.68582958632479	3.55270841151836	3.80048074894858	1.15164162225171	0.0227683988682565	0.139423790678086
Merged-chr3-30975554-4	chr3	30975458	30975658	+	924.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6143.0	NM_001165956	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	4.17699565670566	4.75226015148376	4.41099270045428	4.57182904395255	4.39428435558758	4.24916526236887	4.51306199921328	4.56945795641854	-0.155025436933501	0.691005410637984	0.874245896263794
Merged-chr6-66535272-4	chr6	66535174	66535374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019499)	promoter-TSS (NM_019499)	53.0	NM_001355624	56150.0	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding	9.24368245097817	9.340249735791	9.30160134516097	9.42893630103997	9.41486186660422	9.36991329712606	9.4915137745227	9.29306547770143	0.0756248141484424	0.582401877955344	0.816543320790947
Merged-chr1-155098947-5	chr1	155098868	155099068	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010500, exon 1 of 1)	exon (NM_010500, exon 1 of 1)	668.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	6.72877347858384	7.45140234718437	6.6352636565913	5.71363225867312	7.32463207826316	7.52953498383941	6.76894363043615	6.85503824460442	0.516290589851347	0.325313598251783	0.636892389635108
Merged-chr4-45448481-2	chr4	45448368	45448568	+	1000.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001033306, intron 3 of 5)	URR1B|DNA|hAT-Charlie	-39702.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	3.15518636574035	3.13483621124657	3.23911710112788	2.58100772170503	4.62701394284141	4.43701178622269	4.52069141530253	4.44243413238692	5.94415854337568	1.39811673966984e-18	3.87223935458985e-16
Merged-chr11-20542993-4	chr11	20542897	20543097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021372)	promoter-TSS (NM_021372)	-256.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	9.37407716117573	9.66029819087551	9.74965430670312	9.6257695677309	9.37450812756487	9.62733043881216	9.64034029489622	9.372654919513	-0.124663848123074	0.424291529616997	0.71610190673456
Merged-chr15-78815927-4	chr15	78815874	78816074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-12932.0	NM_130859	105844.0	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	5.79864904872438	5.70984018651753	5.35621936787911	5.74438701189361	6.10937588445125	5.90202961742217	5.64819974787864	5.50810591026201	0.253947781407801	0.374273855770686	0.677684077736553
Merged-chr15-27960635-3	chr15	27960555	27960755	+	963.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	ORR1D2|LTR|ERVL-MaLR	65193.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	4.09500250576771	3.75556629264844	4.14006782989637	4.2488943845419	4.0600542543286	3.91146027028972	4.28317610001384	3.66968650781116	-0.200752847783432	0.665561645258329	0.861482624541591
Merged-chr3-27939058-4	chr3	27938967	27939167	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164056, intron 1 of 26)	CpG	387.0	NM_001164056	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	4.67184975588308	4.63124744568588	5.03718295431847	4.58401944400959	4.08621832147927	4.55061438189628	4.53082586906868	4.91312790811392	-0.415681313069671	0.304398476748595	0.616988329768724
Merged-chr5-64211497-4	chr5	64211386	64211586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	RCHARR1|DNA|hAT-Charlie	-18871.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	6.79903229774736	6.61678697677281	7.41979190532357	6.9987489873631	6.46403743448977	6.51647082776571	6.66515404534228	6.31257863015603	-0.708342108657665	0.00402490854132811	0.040248519958302
Merged-chr18-80497066-3	chr18	80496946	80497146	+	686.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27379.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	3.04202055070935	2.94359623212748	3.36374839957983	3.34326482892485	2.90962006666323	3.02222701785591	2.90565467047525	2.97862929750731	-0.99756292271893	0.100818526883921	0.348510888398419
Merged-chr9-53536813-4	chr9	53536727	53536927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007499)	promoter-TSS (NM_007499)	-156.0	NM_007499	11920.0	Mm.5088	NM_007499	ENSMUSG00000034218	Atm	AI256621|C030026E19Rik	ataxia telangiectasia mutated	protein-coding	9.3177371845044	9.42640552517225	9.46608860534382	9.39730535985625	9.34168397375385	9.5086128808056	9.50741084253614	9.28727996464846	0.0130446296928634	0.925281229518041	0.972442196404162
Merged-chr5-147911312-4	chr5	147911204	147911404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16489.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	6.25931960105435	5.71929904507223	5.77238663766224	6.16223535243854	6.6221583451703	6.56504028815581	6.82754864285869	6.62188468211709	0.970728472701438	7.42285441788683e-05	0.00157669756672864
Merged-chr10-78465734-4	chr10	78465634	78465834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172134)	promoter-TSS (NM_172134)	-786.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	6.74722154224833	6.58737981344135	6.92487637513396	7.00878277808107	6.88060635986124	6.47714553458044	6.78461890116283	6.88142736963459	-0.0894319766108681	0.68330702512573	0.870307072406269
Merged-chr5-38500093-3	chr5	38500000	38500200	+	768.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145559, intron 1 of 10)	RMER19C|LTR|ERVK	2052.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	3.01948744293264	2.86828880456831	3.09187564864051	2.88526463589548	3.59025541178939	3.68420686051426	3.54627382347229	3.78610084681722	2.5659667244751	2.88282062722889e-06	9.12389014786684e-05
Merged-chr16-85071960-4	chr16	85071852	85072052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 5 of 15)	intron (NM_001198825, intron 5 of 15)	99741.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	7.55863329037385	7.73564597582104	8.03872980901707	8.11885108805533	7.58828779852277	7.61122507601882	7.76536516187639	7.74341720012342	-0.278491409303399	0.150077955748631	0.432544693302574
Merged-chr9-115740122-3	chr9	115740043	115740243	+	785.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-169312.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	2.5105008958586	2.59806660987813	2.59568441559718	2.14808826088926	3.22249110340513	3.20335526495298	3.62623575896743	3.08121774277342	5.31118410518713	9.89885966305676e-09	5.25422022339088e-07
Merged-chr19-10182907-4	chr19	10182841	10183041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146094)	promoter-TSS (NM_146094)	53.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	7.25016889304632	7.25769884003341	7.35203310199264	7.05622589171741	6.90805632272629	6.87186514594211	7.12871050961001	7.11392310656586	-0.295782757755263	0.127865841003707	0.397906238532909
Merged-chr12-100925793-4	chr12	100925681	100925881	+	977.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026681, intron 25 of 29)	intron (NM_026681, intron 25 of 29)	-17583.0	NM_001177673	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	5.36728644129506	4.84732033052952	5.04295817908146	5.25901724397079	4.88313933311508	4.9599849602699	4.83917299415499	5.19772847773766	-0.337309902289113	0.304708201091228	0.617262126267403
Merged-chr5-134492016-3	chr5	134491871	134492071	+	839.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 14 of 15)	intron (NM_001039162, intron 14 of 15)	-35255.0	NM_001081464	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	3.50852407303877	3.4776258696325	3.50899160741743	3.38954821988501	3.65340134943463	3.44525116299711	3.59968527148854	3.66193414723354	0.432690799186009	0.369070993130463	0.673437007358128
Merged-chr14-55148665-4	chr14	55148569	55148769	+	897.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31734.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	4.25592238896719	4.23509222475252	4.21059093515422	4.22571163351594	4.63004136315673	4.23921020666795	3.82041355051155	4.57139701213834	0.315940028844721	0.465341153621907	0.745811792142008
Merged-chr14-54382402-3	chr14	54382302	54382502	+	814.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	MLTR14|LTR|ERV1	21561.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	3.94117566826724	4.20602301849579	3.89871214540816	3.54031105147323	3.12572649012713	3.5470950569291	3.14187461811511	3.29444404374841	-2.19140552318484	0.000204347423236589	0.00370202220375596
Merged-chr4-46555896-4	chr4	46555831	46556031	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	10509.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	6.17685937079147	5.81111678242182	6.08045458235244	6.14361880704494	5.92502298604115	5.47688986294208	6.06930704415158	6.22852473508786	-0.167250199806554	0.538238353250687	0.791437674064271
Merged-chr10-96171767-3	chr10	96171674	96171874	+	825.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-54433.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	3.59021612860349	3.50404865937239	3.74052280423847	3.83457354845619	3.36176816027148	3.65263401877705	3.57630521515204	3.29313892435471	-0.676562967186612	0.185031419746774	0.482798142081944
Merged-chr12-17773899-4	chr12	17773821	17774021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	83112.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	7.0573436490621	7.18602761305608	7.25080242522903	6.7631712437667	7.18621741737954	7.41672844597267	7.16117426884443	6.89772802025514	0.152744793857902	0.479860501963051	0.755546500967284
Merged-chr3-14579793-3	chr3	14579657	14579857	+	813.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007892, intron 1 of 7)	intron (NM_007892, intron 1 of 7)	1086.0	NM_007892	13559.0	Mm.153415	NM_007892	ENSMUSG00000027552	E2f5	AU024671|E2F-5	E2F transcription factor 5	protein-coding	3.24816607041845	3.18720938241762	3.5097003362075	3.47428676329253	3.2146173520398	3.36059571216216	3.05258305197432	2.99229808247897	-0.76128206709959	0.183035051173369	0.479931670936247
Merged-chr12-55459115-3	chr12	55459033	55459233	+	810.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33514.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	3.40398778057643	3.0261201211032	3.35393763917669	3.18804450898141	3.02395788701332	3.35957324711374	3.05563042145434	2.99853976534793	-0.517072965839321	0.37278205889889	0.676473676259602
Merged-chr10-13304050-4	chr10	13303962	13304162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	20227.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	6.16160977929522	6.36080195436756	6.08059997330751	6.21642457567561	6.32562692021919	6.23523176468632	6.09102567584909	5.76580107309958	-0.125805556981482	0.611151565099796	0.832207630322895
Merged-chr19-10698136-3	chr19	10697997	10698197	+	916.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	intron (NM_001361958, intron 1 of 4)	-2671.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	3.44099450857868	2.96535977514775	3.0836017232998	2.37288200541914	2.89957704475505	3.19962713562714	2.88384780569648	2.82324911783692	-0.290654537739472	0.696569237098492	0.877277663843331
Merged-chr1-169969316-4	chr1	169969218	169969418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040438)	promoter-TSS (NR_040438)	-91.0	NR_040438	67303.0	Mm.396611	NR_040438	ENSMUSG00000097503	3110045C21Rik	AI838577	RIKEN cDNA 3110045C21 gene	ncRNA	8.52891054196107	8.90300988124439	8.62379720478301	8.78088068540076	8.43938462199752	8.34399685408965	8.83218897074013	8.27275103208714	-0.286528042951825	0.121462637156609	0.385992168757419
Merged-chr16-20693679-3	chr16	20693582	20693782	+	912.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001304432)	TTS (NM_001304432)	-1375.0	NM_133778	78408.0	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding	5.02051447305884	4.8752484944378	4.69869093565314	4.16877587774575	4.84790699578	5.06124506241009	4.75495839562107	5.10933684197154	0.479348893620153	0.215328187589423	0.521432755745963
Merged-chr1-156009175-3	chr1	156009065	156009265	+	784.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144791, intron 6 of 6)	intron (NM_144791, intron 6 of 6)	25652.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	2.95654330784916	2.94568925884968	3.03352787363278	2.82774047766525	3.70478178696633	3.80324259170501	3.91022377150233	3.47629060923023	2.96857495217097	1.17251520607186e-07	4.96481022325932e-06
Merged-chr13-119406755-3	chr13	119406635	119406835	+	750.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308506, intron 1 of 16)	intron (NM_001308506, intron 1 of 16)	2276.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	3.21777568098805	3.10830896088542	3.47926117963991	3.25303753136918	3.21726601799953	3.20661441311299	3.20622555946659	3.03024068775886	-0.379743527715869	0.494581504975297	0.765224301099017
Merged-chr12-98259473-4	chr12	98259379	98259579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008079)	promoter-TSS (NM_008079)	-20.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	7.34237788684973	7.35345411294179	7.29078138108037	7.13169824228288	7.61225899752611	7.77257051077391	7.84368621272355	7.31767372009389	0.502599473747937	0.0094769563142502	0.0759468896072973
Merged-chr3-21735919-3	chr3	21735813	21736013	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_2-LTR_MM|LTR|ERVK	-340739.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.35794576284051	4.24396863811285	4.77469945778264	4.56326095604247	3.9997198363798	3.79375796584464	4.0673161231821	4.03033993054331	-1.32350908510917	0.00204616956163127	0.0237942008213286
Merged-chr16-29607294-4	chr16	29607209	29607409	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133752, intron 7 of 28)	intron (NM_133752, intron 7 of 28)	27975.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	5.34693906265539	5.47142743795527	4.94780688788208	5.53935229774666	4.34531190668427	4.80408118634966	5.02695814531911	4.52221639707046	-1.30979255922439	0.000346714523177256	0.00570353961622206
Merged-chr7-19832055-4	chr7	19831974	19832174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9319.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	5.32720168911814	5.64199947574565	5.82048810924089	5.5633440125213	5.42568423515108	5.47300069417785	5.27005317060683	5.55533175336516	-0.283813729905774	0.313276818174623	0.625166179930743
Merged-chr7-128744857-4	chr7	128744759	128744959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029982)	promoter-TSS (NM_001029982)	-11.0	NM_001029982	207352.0	Mm.297105	NM_001029982	ENSMUSG00000055319	Sec23ip	D7Ertd373e|p125	Sec23 interacting protein	protein-coding	7.64754130002348	7.44751461674422	7.40130883274648	7.02662890699667	7.45968749329337	7.53862892010734	7.19800683397729	7.25126788859763	-0.022741325498807	0.914335044707876	0.967950384482346
Merged-chr15-25909975-2	chr15	25909875	25910075	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-23577.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	4.02664092521309	4.71134858387594	4.42982734509333	3.35864969046726	4.15515682337757	4.5232796051027	4.20205221845143	3.7349871205831	-0.130634981257223	0.815267135582958	0.928718235748118
Merged-chr5-148399357-4	chr5	148399255	148399455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007513, intron 1 of 12)	CpG	549.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	5.90158729603962	5.99907557650033	5.85525018653373	5.95058688822649	5.88932730548095	6.07825594165556	6.2991605530842	5.85109528443621	0.166654532247974	0.501486060107867	0.7692646023024
Merged-chr10-44024945-3	chr10	44024845	44025045	+	863.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20099.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	3.45521755140231	3.79572830942185	3.12886347204691	3.63837559735035	3.37205993482548	3.6838309427974	3.70112333655306	3.51053903485085	0.117389749910045	0.829915301192117	0.934690278259685
Merged-chr2-16359536-4	chr2	16359441	16359641	+	852.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026162, intron 1 of 13)	intron (NM_026162, intron 1 of 13)	3237.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	4.12315740373576	4.23072611716718	3.93654001825311	4.2617104002304	3.9981012430792	3.64334960364923	4.06155944976024	3.71568826139466	-0.75261413099016	0.097634833453414	0.342443570039448
Merged-chr4-154910803-4	chr4	154910699	154910899	+	860.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12|LTR|ERVK	-11756.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	4.00691343030164	4.17603323940218	3.7470780692345	3.83155404725388	3.89829211023489	3.68080344497538	4.35184910735408	3.95707396726827	0.128554601721806	0.783385575636011	0.915636043192861
Merged-chr12-3418955-4	chr12	3418849	3419049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	intron (NR_030694, intron 1 of 2)	7798.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	5.95217706885548	5.76531309247533	5.65112206098392	5.89503845074658	5.67355245975279	5.59961856517824	5.64847439099329	5.59356421900861	-0.322710810401343	0.20744269131183	0.511447929091922
Merged-chr3-88177678-4	chr3	88177581	88177781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045997, exon 1 of 3)	non-coding (NR_045997, exon 1 of 3)	104.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	8.11771468133648	8.39758230833212	7.92697933713545	8.07057486272148	8.21092923923558	8.42936837519431	8.22416057819506	8.23473535350606	0.172703755391261	0.318180614161281	0.63005001767612
Merged-chr3-85887542-3	chr3	85887409	85887609	+	897.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177130)	promoter-TSS (NM_177130)	9.0	NM_177130	320302.0	Mm.482978	NM_177130	ENSMUSG00000031286	Glt28d2	4732486J07Rik|Glt28d1l	glycosyltransferase 28 domain containing 2	protein-coding	3.50436149231684	3.49825622093885	3.2837853704124	3.27242588328759	3.3624994570385	3.39577397572352	3.38598382857306	3.34095974513219	-0.0597600676449362	0.907499940496322	0.96572638861679
Merged-chr3-96636737-4	chr3	96636637	96636837	+	850.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162387, exon 2 of 5)	exon (NM_001162387, exon 2 of 5)	890.0	NM_001162388	18632.0	Mm.20901	NM_011069	ENSMUSG00000028102	Pex11b	PEX11beta|Pex11pbeta	peroxisomal biogenesis factor 11 beta	protein-coding	3.78668572584076	3.75176714650374	3.78718287987855	4.40357332045868	4.00974023546924	4.17075876009214	3.8814611242051	4.33643744586672	0.320558619377278	0.515435686639038	0.777533445789008
Merged-chr14-87464412-3	chr14	87464296	87464496	+	729.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253755, intron 3 of 11)	intron (NM_001253755, intron 3 of 11)	47813.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	3.39619058143164	3.45485947680792	3.2206368332602	3.46848157498089	3.26844169201529	3.39327194954807	3.53604887196907	3.28021483896935	-0.084985302661457	0.870733546668893	0.951430072143722
Merged-chr4-150656125-4	chr4	150656045	150656245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3971.0	NM_173774	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	5.99098668976237	6.97965884116032	6.08474559659561	5.76969048743362	6.75529509589029	6.5935884664568	6.36706512052717	6.26709220696506	0.317264587907486	0.324206557773982	0.63575675177129
Merged-chr13-37434234-4	chr13	37434130	37434330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88885.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.51537206089325	5.35268716853926	5.16082158075395	5.30232487867433	5.44472784854835	5.3022503082601	5.20174406974825	5.58706360162806	0.106377456351819	0.713194740959994	0.88527884500467
Merged-chr4-34765921-4	chr4	34765822	34766022	+	941.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-9663.0	NM_001033255	214568.0	Mm.297405	NM_001033255	ENSMUSG00000071015	Gm136	-	predicted gene 136	protein-coding	3.81161163923486	4.27308799175781	4.59200960882486	3.96497081216099	4.83374147746737	4.13762407347064	5.12844084653528	5.10044918762183	1.46122005676302	0.00164917938453088	0.0201349810311362
Merged-chr5-86942919-4	chr5	86942817	86943017	+	917.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-16414.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	4.54559239898413	4.35491797396191	4.99822239320019	4.786814615201	4.67618665034458	4.44796118927271	4.48352120318524	4.62428106310242	-0.281335058065465	0.455331458602718	0.738892412554609
Merged-chr11-78080364-4	chr11	78080269	78080469	+	981.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022313)	promoter-TSS (NM_022313)	14.0	NM_022313	57837.0	Mm.21096	NM_022313	ENSMUSG00000020832	Eral1	2610524P08Rik|9130407C09Rik|AU019798|Era|M-ERA|MERA-S|MERA-W	Era (G-protein)-like 1 (E. coli)	protein-coding	5.2012103846964	4.88035745347102	4.56224452553635	4.83559988012266	4.70988445133538	5.12849861804554	4.75182797739286	4.9864308364513	0.0234599278801775	0.946760236987845	0.98095209334417
Merged-chr7-45333667-4	chr7	45333582	45333782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175130)	promoter-TSS (NM_175130)	98.0	NM_175130	68667.0	Mm.439890	NM_175130	ENSMUSG00000038260	Trpm4	1110030C19Rik|AW047689|LTRPC4|LTrpC-4|TRPM4B	transient receptor potential cation channel, subfamily M, member 4	protein-coding	6.07446788940119	6.59584702152006	6.38090436592718	6.17226064357656	6.02534681497572	6.43159967418309	5.78331373325747	6.13432684419477	-0.319643967758555	0.224179524341853	0.532357188334182
Merged-chr6-28866341-4	chr6	28866248	28866448	+	737.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	-34601.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	4.59037924809824	4.71356701164147	4.43244404569881	4.20574496073166	4.55644622389524	4.68537701491003	4.13331325831512	4.03921904977896	-0.243965529663709	0.566100679397332	0.807783748011785
Merged-chr2-167906968-4	chr2	167906859	167907059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-25368.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	5.52820259235365	5.74562892959158	5.73637161363247	5.20878641403049	5.75251121265451	5.75924459787287	5.63391074198545	5.65858392230829	0.253473751652622	0.371630789253418	0.675639983971498
Merged-chr2-167886699-4	chr2	167886602	167886802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45625.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	6.82943054572781	6.68618098213876	6.64575896542505	6.56847912261062	6.7700133589825	6.58793560427748	6.54933750818274	6.56201947471808	-0.0710727618380899	0.732272813665205	0.893952343664963
Merged-chr10-61370997-3	chr10	61370885	61371085	+	913.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	12538.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	3.93546188963797	3.28435841569526	3.45600649323373	3.49001372379239	3.49631313227812	3.57196707864399	3.60494436812383	3.4541939874964	-0.0858444599688368	0.869032641851653	0.950890741040292
Merged-chr11-71289620-3	chr11	71289488	71289688	+	808.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-4356.0	NR_027858	627984.0	Mm.390378	NM_001039234	ENSMUSG00000092528	Nlrp1c-ps	Nalp1c|Nlrp1c	NLR family, pyrin domain containing 1C, pseudogene	pseudo	2.63269084031263	2.56892625101912	2.63292519954705	2.21208909642898	3.8822064053409	3.33392731121167	3.50881822067771	3.5245252322691	7.50409355829493	5.98349418783356e-14	8.14338686034044e-12
Merged-chr14-48131452-2	chr14	48131337	48131537	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033602, intron 1 of 5)	intron (NM_033602, intron 1 of 5)	10568.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	4.70014945580638	4.29968426869939	4.39220147158237	4.48874037054678	3.66767731010344	3.66818384417919	4.01799015007744	3.98039977377266	-1.70736593268996	0.000144229739080096	0.00276342627132763
Merged-chr15-96640874-4	chr15	96640775	96640975	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	intron (NM_001166458, intron 1 of 15)	1087.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	5.41561117117117	5.92221645967829	5.55351800635553	5.28056548696771	5.59963458907035	5.30451421436205	5.26909435532003	5.15774091527291	-0.358519268853886	0.256575979509964	0.568165481762166
Merged-chr1-78658416-1	chr1	78658316	78658516	+	1000.0	f1_balb.idr	promoter-TSS (NM_001136226)	promoter-TSS (NM_001136226)	-24.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	4.72452612514868	4.79676012405526	4.68692149289023	4.83812252963242	4.8337318360748	4.46003385527283	4.74003374953795	4.68387952312844	-0.15498989106563	0.651162725427131	0.853810659172474
Merged-chr10-90983225-3	chr10	90983123	90983323	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	99520.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	3.31978251655469	3.21052887864068	3.40335364331186	2.96275622136951	4.74667051334244	4.14315734123959	5.29498706892389	5.14961615195059	4.88287986227575	2.6745094234003e-15	4.55428005378493e-13
Merged-chr17-65870340-4	chr17	65870258	65870458	+	892.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009067, intron 1 of 9)	B3A|SINE|B2	14565.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	4.2616375284301	4.24035968501593	3.70597860959184	4.06753238836645	4.44464196454861	4.47975395650568	4.45043892474059	4.61415319523719	0.983404340847353	0.0156194946432784	0.107950287330218
Merged-chr3-84693045-3	chr3	84692950	84693150	+	697.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177260, intron 6 of 6)	intron (NM_177260, intron 6 of 6)	26858.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	3.166499026884	3.24471454744139	3.22337636436845	3.24541554998215	3.41029216143822	3.0887783215648	2.75935655834757	3.04454208723687	-0.442613295393549	0.479672954394139	0.755368168602221
Merged-chr7-140112397-7	chr7	140112329	140112529	+	970.108826	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_053119, exon 3 of 8)	exon (NM_053119, exon 3 of 8)	3994.0	NM_053119	93747.0	Mm.24452	NM_053119	ENSMUSG00000025465	Echs1	C80529	enoyl Coenzyme A hydratase, short chain, 1, mitochondrial	protein-coding	3.97889674943141	3.73389153638766	3.82430263181535	4.03249977789443	4.10754893468493	3.99968458111029	3.86246028145967	4.35303923810279	0.501413788499465	0.256562625589003	0.568162252716061
Merged-chr4-128610190-4	chr4	128610092	128610292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177758)	promoter-TSS (NM_177758)	-94.0	NM_177758	269585.0	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	7.94194563721511	8.03710767758846	7.6821078377927	7.6496210767468	7.89933617517659	8.04939022984672	7.93916194812865	7.75946673565836	0.105763005719492	0.557705597770714	0.802816324871987
Merged-chr12-85604534-4	chr12	85604428	85604628	+	970.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	4510.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	4.5854012680788	4.2739272240087	4.66695744673541	4.89344620158422	4.6930994765144	4.80060513381627	4.72046961760748	4.84578135556198	0.256643096534875	0.486056460002833	0.759806139731666
Merged-chr19-38930925-4	chr19	38930826	38931026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008234)	promoter-TSS (NM_008234)	-64.0	NM_008234	15201.0	Mm.57223	NM_008234	ENSMUSG00000025001	Hells	AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8	helicase, lymphoid specific	protein-coding	6.39149842870354	6.02616872660062	6.11851746473112	6.10382651999566	6.16204038785285	5.91904871341592	6.14698126677072	6.28601760066867	-0.034679199349025	0.88456058329942	0.956624037971431
Merged-chr2-46149987-4	chr2	46149877	46150077	+	856.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	453372.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	4.08579571381306	3.91934324707554	4.17436108032339	4.10206934565563	3.59219386551739	4.25667268008619	3.97492977948735	3.93971537728712	-0.329741281510346	0.468980014697528	0.748045455824209
Merged-chr5-138187430-4	chr5	138187316	138187516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178612)	promoter-TSS (NM_178612)	35.0	NM_001356602	21343.0	Mm.248517	NM_009315	ENSMUSG00000036980	Taf6	80kDa|AW549759|TAF(II)80|TAFII70|Taf2e|p80	TATA-box binding protein associated factor 6	protein-coding	4.99671543621772	5.42031020174884	4.84648181756996	4.91222421598561	5.16847992800444	5.39722425178453	5.04225562899821	4.99418441609878	0.18344639312346	0.579115114793804	0.815233759185512
Merged-chr10-37361158-2	chr10	37361058	37361258	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-222232.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	3.07560867881676	2.75852118342715	2.91201917973729	2.87326301851488	2.73227522643409	2.60729298342287	2.7154420925717	2.91046704846943	-0.752959787663444	0.244307067590198	0.555451904174872
Merged-chr4-119157416-1	chr4	119157316	119157516	+	555.0	f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	16440.0	NM_001145935	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	2.75133379270363	3.01071117713663	2.89129707841782	2.54219420669339	2.99938549306676	3.3556310626511	2.94522573861702	3.13157307864131	1.33795214473109	0.0350911117257077	0.185593257991634
Merged-chr2-153346421-4	chr2	153346316	153346516	+	973.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040318)	promoter-TSS (NR_040318)	277.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	4.82680866837409	4.93950925127794	5.00070904906408	4.37740540848777	4.82302017052748	5.03772493481678	4.56275319056097	5.14923905701901	0.235515122167115	0.529398695529831	0.785614700149936
Merged-chr2-52930383-6	chr2	52930341	52930541	+	929.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	72573.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.64223971772553	3.85040264800783	3.74917393027381	3.49593267310406	3.80333501909639	3.91969967961069	3.45313618405747	3.84512972178193	0.254021729343628	0.598389481447436	0.825953399393947
Merged-chr12-85395244-2	chr12	85395144	85395344	+	940.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20527.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	3.25030475090735	3.339921262418	3.36667625669166	3.17993149328625	3.49689388558248	3.29988191806342	3.23924184015639	3.52092047878984	0.427468334766469	0.412537861812508	0.707618200495277
Merged-chr11-60879601-4	chr11	60879446	60879646	+	973.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168507)	promoter-TSS (NM_001168507)	-508.0	NM_001168507	216821.0	Mm.28063	NM_173453	ENSMUSG00000043284	Tmem11	5730466P16Rik|AA409091	transmembrane protein 11	protein-coding	5.12743855430478	5.04797521608573	4.78836851420773	4.69096647117187	5.06671364986004	4.84324989275059	4.76595987856399	4.93214689135851	0.00326219013983509	0.992299207589673	0.99713419623776
Merged-chr4-109438147-4	chr4	109438056	109438256	+	896.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145948, intron 12 of 17)	intron (NM_001145948, intron 12 of 17)	22509.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	4.30735377789077	4.04513288259691	4.47838142701383	4.11729350204474	4.1500706150359	4.79729618038714	4.49614099298716	4.4754306919785	0.594800861565103	0.146124956898852	0.426097022003416
Merged-chr17-86950424-4	chr17	86950341	86950541	+	764.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2554.0	NM_029121	74915.0	Mm.159369	NM_029121	ENSMUSG00000053375	Atp6v1e2	4930500C14Rik|Atp6e1|E1	ATPase, H+ transporting, lysosomal V1 subunit E2	protein-coding	3.83808618456044	4.57904478969334	4.45839631164197	2.82140616216605	4.33980697458192	4.36075402679726	3.64397162491919	3.45080704548407	-0.305724135847959	0.780888044100544	0.914720297579717
Merged-chr5-147059505-4	chr5	147059386	147059586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	17086.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	7.33687140465475	7.10365699761633	7.23540242968627	7.39137970097952	6.15763198350639	5.80015661421506	6.17760481016868	6.11465731708903	-1.72246084804643	5.00743452513169e-15	8.17486656110892e-13
Merged-chr11-83473949-3	chr11	83473851	83474051	+	694.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027427, intron 1 of 15)	intron (NM_027427, intron 1 of 15)	843.0	NM_027427	70439.0	Mm.181050	NM_027427	ENSMUSG00000020680	Taf15	2610111C21Rik|68kDa|TAFII68|Taf2n	TATA-box binding protein associated factor 15	protein-coding	4.14282530087105	3.73656443521495	3.64497440190338	3.71685113159075	3.61651308381527	3.44912214966079	3.63074918465785	3.84739374631349	-0.531284620054275	0.281810053468548	0.593954970650299
Merged-chr9-110117314-5	chr9	110117266	110117466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001252682, exon 1 of 23)	5' UTR (NM_001252682, exon 1 of 23)	250.0	NM_001252682	72831.0	Mm.276305	NM_133347	ENSMUSG00000032480	Dhx30	2810477H02Rik|C130058C04Rik|Ddx30|HELG|Ret-CoR	DEAH (Asp-Glu-Ala-His) box polypeptide 30	protein-coding	5.71664854960865	5.85001064008649	5.94800118078879	5.5717871496098	5.46149685624735	5.5835727607034	5.87497812774393	6.06390222421076	-0.0127188386430249	0.964186950811298	0.987306728614525
Merged-chr13-5888354-4	chr13	5888244	5888444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26855.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	6.43597140081399	6.37377911842033	6.9718408987643	6.52101921908091	6.05654868079978	6.63109640094671	6.45546682203574	6.65683105416347	-0.192200399632249	0.455718743415227	0.739099627177188
Merged-chr7-4812822-4	chr7	4812718	4812918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133777)	promoter-TSS (NM_133777)	-478.0	NM_133777	77891.0	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	8.66933135638599	8.74772324261076	8.56443947936176	8.50234303280668	8.82234399255041	8.99493222228487	8.9492945682121	8.59693225378031	0.284171770905642	0.0782396269761854	0.302631149252141
Merged-chr13-23760258-4	chr13	23760164	23760364	+	899.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178192)	TTS (NM_178192)	985.0	NM_178192	326619.0	Mm.228709	NM_178192	ENSMUSG00000060093	Hist1h4a	-	histone cluster 1, H4a	protein-coding	4.46124709017105	4.62897604992396	4.4159681688638	4.20166682308445	4.86769336426269	4.91686017292026	5.0653722788624	4.41322896094791	0.893942007227633	0.0171094717466413	0.11507465647304
Merged-chr3-32715347-4	chr3	32715228	32715428	+	942.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019673, intron 4 of 13)	intron (NM_019673, intron 4 of 13)	6782.0	NM_019673	56456.0	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	4.4894803942448	4.36991603071678	3.99946795863604	4.16427618908701	4.74365773805011	4.74036263955149	4.62177092610971	4.44575874424123	0.875600769278365	0.0210425611822374	0.132453878881365
Merged-chr6-134544299-4	chr6	134544205	134544405	+	839.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	22608.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	4.07116571682866	4.25026779760967	3.91732430492599	4.28324634583184	3.94612728074052	3.92450855128574	4.19084849108898	4.4442145047588	-0.0212080341307066	0.96121924504595	0.986114717027689
Merged-chr3-75499148-4	chr3	75499076	75499276	+	944.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57676.0	NM_019745	56426.0	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	4.90088831851787	4.43462001989534	4.63000078366485	5.04942043447677	4.78839169805565	4.57809765460103	5.3365752147273	5.03093215766696	0.35106140696882	0.363350761640549	0.668503886726201
Merged-chr9-95552226-4	chr9	95552130	95552330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7587.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	5.01670400178938	5.03140370815528	5.43657128076311	5.28036315432871	5.02787979630411	5.12080555758813	5.0948167576589	5.08315670613624	-0.241784809801391	0.432010274624222	0.722103591430525
Merged-chr17-80180203-4	chr17	80180114	80180314	+	971.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 4 of 6)	intron (NM_176963, intron 4 of 6)	27091.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	5.14859961786344	5.20362541829506	5.21176471308921	5.06176483504757	5.10711085820585	5.25775587113825	4.88082975584161	5.17743775339898	-0.0744046082028021	0.806152151672425	0.925358561244123
Merged-chr10-117081954-4	chr10	117081820	117082020	+	741.674988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 5 of 9)	B1_Mm|SINE|Alu	-18068.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	4.02053205591077	3.68781172582472	3.6819215015831	3.48790861919872	3.88783262110906	3.74367909302136	3.7726011854257	3.9306734948805	0.349724002201116	0.45803759316129	0.741020020538387
Merged-chr12-55398710-4	chr12	55398609	55398809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011968)	promoter-TSS (NM_011968)	-116.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	8.40924388784813	8.64045540328194	8.76274325124001	8.75720128130688	8.53356775243086	8.63047861764061	8.79729098790936	8.29326599403582	-0.0968566411045966	0.580809961055309	0.815976950911987
Merged-chr10-75217984-1	chr10	75217884	75218084	+	595.0	f0_balb.idr	intron (NM_001145826, intron 1 of 18)	ORR1B1|LTR|ERVL-MaLR	5594.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	3.32533761263617	3.47152174983702	3.32572074087482	3.52480100665535	3.83072481220174	3.56090381999999	3.43360335106774	3.70410043567897	0.719233241337583	0.154850228767665	0.440269481011378
Merged-chr4-118135048-4	chr4	118134940	118135140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161774)	promoter-TSS (NM_001161774)	-94.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	7.90510027821866	7.78047245271407	7.91352485899198	7.944275577938	7.91334004377805	7.8998996006232	7.95748161168172	7.58677649167234	-0.0512960715591523	0.764038627414115	0.907495877662978
Merged-chr6-117841174-4	chr6	117841071	117841271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346652)	promoter-TSS (NM_001346652)	-10.0	NM_001346649	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	6.55324299496477	6.0234931882241	6.04039297850292	6.54872387949725	6.26871377552777	6.14882359709409	6.37811601940914	6.31898019857574	-0.071073686585316	0.777822077004411	0.913396205812139
Merged-chr10-14042886-4	chr10	14042735	14042935	+	963.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	76456.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.44791075671296	4.97279949752519	5.13651470996508	4.72744075640114	4.56870180069025	4.71835257571179	4.76157076694936	4.7437157888021	-0.304591001343695	0.400065813739121	0.698016583884129
Merged-chr3-94310179-4	chr3	94310100	94310300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029431)	promoter-TSS (NM_029431)	68.0	NM_029431	75778.0	Mm.45092	NM_029431	ENSMUSG00000028145	Them4	2700077M13Rik|4921507I02Rik	thioesterase superfamily member 4	protein-coding	8.29413545596847	8.34592140066301	8.30113873984557	8.60910512949115	8.30183392912672	8.15143054799864	8.67969298379646	8.31808545815172	-0.0285920203242325	0.875102529199642	0.953042059516835
Merged-chr15-100616019-4	chr15	100615933	100616133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045701)	promoter-TSS (NR_045701)	371.0	NM_011873	23994.0	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	7.02835039018306	7.15246967490379	6.85433782135265	6.83687219233253	7.32750546838326	7.45619507935271	7.26368808554335	7.23272106462007	0.482812179718316	0.0113716253760748	0.0864752739464364
Merged-chr15-94601533-4	chr15	94601433	94601633	+	943.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-11709.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	4.80312069940992	4.55977382617276	4.61744196690598	4.7502220333831	4.66544130498238	4.62163561221649	4.74620084725548	4.57372424694759	-0.0771793656283167	0.82180330705074	0.931896408994179
Merged-chr9-110656559-4	chr9	110656474	110656674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028312)	promoter-TSS (NM_028312)	71.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	6.98714928327252	7.19920626519397	7.47644562064918	6.79862799482748	7.09448475113952	7.36825110984344	7.08773581933852	7.05893505164815	0.0366295669072334	0.869109317592789	0.950890741040292
Merged-chr7-126759474-4	chr7	126759366	126759566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011952)	promoter-TSS (NM_011952)	-160.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	6.96445415876282	7.07826208515296	6.4609879743408	6.01312817158654	6.93516724202271	7.22434241752218	6.81559808086395	6.54439405008251	0.299651415231821	0.307139147475191	0.619358168218558
Merged-chr8-46142877-4	chr8	46142773	46142973	+	912.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18727.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	3.91475653066023	3.67307388576634	3.91531577319878	4.12528450508981	4.2555284855352	3.93041338059604	4.20775194614116	3.69378107496638	0.323667427959374	0.490247108093263	0.76216937207179
Merged-chr3-94456657-4	chr3	94456556	94456756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13320.0	NM_030116	78523.0	Mm.218515	NM_030116	ENSMUSG00000028140	Mrpl9	8030480E20Rik|AA409733|C330013D18Rik|L9mt	mitochondrial ribosomal protein L9	protein-coding	5.45549244341222	5.4901747974931	5.42732587527235	5.61901811196934	5.47296956611623	5.57310148005598	5.37079735901355	5.80193656349207	0.0857466626238295	0.756609506577764	0.904386007179465
Merged-chr4-139616847-4	chr4	139616727	139616927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_183148, exon 12 of 12)	3' UTR (NM_183148, exon 12 of 12)	-6067.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	5.66533034537143	5.33095587739041	5.37117875199584	5.47387365066646	5.24660681246476	5.63285725156686	5.5127300032563	5.51005637729803	0.0122532833292742	0.965507726602844	0.987780988183285
Merged-chr19-53944108-4	chr19	53944046	53944246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355242)	promoter-TSS (NM_001355242)	-160.0	NM_001168505	56392.0	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	8.04175189027131	8.07327098168029	8.23373368475513	8.16750739738631	8.00003722715479	8.17331129694522	8.36978182646142	7.70476162473395	-0.0620295408771459	0.742147228366258	0.898417179766546
Merged-chr9-13662110-10	chr9	13661968	13662168	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173776)	promoter-TSS (NM_173776)	-392.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	4.52720156854632	4.96738664439914	4.57057670868323	4.58423772231246	4.51885351121358	4.86329363057429	4.27306264230965	4.96105074264961	0.00603410160337573	0.987596643214439	0.995315979319888
Merged-chr6-31190779-4	chr6	31190682	31190882	+	949.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 1 of 2)	intron (NR_110470, intron 1 of 2)	27692.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	4.69821043479732	5.03928209758642	4.56828205612043	4.98848564792269	5.14402439888339	4.74738866768857	4.79500056627667	5.14502194366872	0.251957002939061	0.472243873298362	0.750448530501952
Merged-chr4-135875306-4	chr4	135875192	135875392	+	856.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1446.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	3.80556689780053	3.89044907719985	3.80608128204901	3.87449381161631	4.06891701559119	4.0335515060263	3.89542741697354	4.29846461824135	0.635183416456939	0.137141338552495	0.411824241716235
Merged-chr1-24682097-4	chr1	24681994	24682194	+	940.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310483, intron 1 of 15)	MTC|LTR|ERVL-MaLR	3176.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	4.52550971819877	4.29558606175793	4.25538951640628	4.27038741468318	4.75938013355038	4.52815460856082	4.62078318619784	4.81277391998136	0.797475127326262	0.0263757006439421	0.153985892071453
Merged-chr1-119502703-4	chr1	119502603	119502803	+	961.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022327, intron 1 of 4)	RSINE1|SINE|B4	2079.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	5.35660747180148	5.30420778955704	5.07342409017088	5.33477214813455	5.58734753181832	5.02229048803003	5.15008164139251	5.17181217487231	-0.0136499493638675	0.965272274720222	0.987724662415875
Merged-chr7-28209139-4	chr7	28209049	28209249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	28833.0	NM_001271370	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	6.41663102022966	6.31771262329262	6.05255501031775	6.32343310904877	5.88957017775686	6.31518224366816	6.24452287510425	6.49383875860635	-0.0670930371115223	0.78734999321727	0.917510601855574
Merged-chr7-141009154-4	chr7	141009055	141009255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025378)	TTS (NM_025378)	1589.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	6.42710140523195	6.40584810976731	5.87133243672106	6.08409068192201	6.36800670704378	6.42520560844882	6.23628570556674	6.47264967641115	0.248752768438772	0.303821961202206	0.616555796305716
Merged-chr1-72428743-4	chr1	72428664	72428864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001045533, exon 4 of 4)	exon (NM_001045533, exon 4 of 4)	107800.0	NM_001045533	381270.0	Mm.337023	NM_001045533	ENSMUSG00000039372	March4	BC056494|mKIAA1399	membrane-associated ring finger (C3HC4) 4	protein-coding	5.81963298017416	5.65500065830373	6.28318343718848	6.48026350652152	5.47691289183147	5.78855447991805	5.71638840341206	5.9100899305032	-0.626388655909275	0.0381111975847798	0.195511130298165
Merged-chr4-145096992-4	chr4	145096876	145097076	+	890.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 42 of 69)	intron (NM_001276465, intron 42 of 69)	93690.0	NM_001276502	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	4.9457942762269	4.48226331888132	5.16219900744844	5.69243524176473	4.36405833446359	4.54875616749249	4.5367448328107	4.64219231567323	-1.31028811492728	0.00172772710922095	0.0208720108464423
Merged-chr13-4616812-4	chr13	4616724	4616924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7660.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	6.04710721366647	6.23800969642617	6.17352403035789	5.85901192625933	6.42669523368617	6.49792470301639	6.25527834832831	5.97626349367201	0.354203364548894	0.154530959613918	0.439801241388062
Merged-chr7-114072146-4	chr7	114072078	114072278	+	783.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	45603.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	3.59219131690607	3.5044950685422	3.29180648540059	3.30130771376853	3.97210822718746	3.91306518956249	3.5780554146747	3.41864871990553	1.0229977848955	0.0455723711547815	0.218746766904457
Merged-chr3-105053045-4	chr3	105052926	105053126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163332)	promoter-TSS (NM_001163332)	-73.0	NM_001163333	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	7.2761672576209	7.29955036370781	7.52680084261435	7.47776053181285	7.60190826221801	7.73065921325466	7.55981823312823	7.46615977984807	0.250805597629267	0.158257473673141	0.445134872270402
Merged-chr2-14231616-4	chr2	14231515	14231715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 1 of 29)	intron (NM_008625, intron 1 of 29)	2201.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	6.69746425767195	6.62731123332222	6.43129830816866	6.45338016215952	6.55195894752834	6.65873315911917	6.14851557858281	6.39117402379758	-0.143936594963269	0.527246967486446	0.784237720957866
Merged-chr1-75251721-4	chr1	75251598	75251798	+	981.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359281, intron 19 of 22)	intron (NM_001359281, intron 19 of 22)	12073.0	NM_001359281	19275.0	Mm.2902	NM_008985	ENSMUSG00000026204	Ptprn	IA-2|mIA-A|mKIAA4064	protein tyrosine phosphatase, receptor type, N	protein-coding	5.28872043747281	4.91215349650159	4.88384751544072	5.02620374173119	4.79841347463089	5.22743461503191	4.70571063366109	4.7244641539013	-0.315892395460477	0.355313159684241	0.661873161999545
Merged-chr8-31149847-4	chr8	31149717	31149917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199988)	promoter-TSS (NM_001199988)	-499.0	NM_144927	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	6.7241836426155	6.94455776689863	6.82771940971099	6.91473988406237	6.99766016642665	6.96168659648693	6.8611204614671	7.01748207329496	0.139654428942502	0.466490365350293	0.746420287776482
Merged-chr4-123962624-4	chr4	123962537	123962737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	45204.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	6.31968154339413	6.53470674291168	6.93070084724119	6.73685803778264	6.58003102842888	6.17564332757139	6.08204880304418	6.5904170046655	-0.390588143687531	0.123093288615815	0.389007542303628
Merged-chr11-102137798-4	chr11	102137704	102137904	+	813.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-7709.0	NM_145829	217214.0	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding	4.45849679770448	4.00567881871993	4.30535870663635	3.96603866747217	4.13280047715032	3.87286238774162	4.20168451226911	4.21803350029699	-0.182047972406134	0.674304273356684	0.866093506924868
Merged-chr18-67723974-2	chr18	67723874	67724074	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008977, intron 1 of 9)	CpG	647.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	4.505938476506	4.77095935495971	4.83070225633752	4.75884108775692	4.64118648739637	4.81304780415392	4.90969856034115	4.9945894886431	0.233531964145295	0.492143790209262	0.763346782261791
Merged-chr14-7913999-4	chr14	7913882	7914082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081427, intron 25 of 45)	intron (NM_001081427, intron 25 of 45)	80200.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	5.78841618262087	6.55546607146443	6.27784092762912	6.54071333221438	6.20061560023667	6.18949696973235	6.15053332951729	5.96174131071202	-0.317390790628508	0.231710349884436	0.5412560132789
Merged-chr4-132514095-4	chr4	132513995	132514195	+	968.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3639.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	5.11504416629611	4.88301711209982	4.8754776315852	4.81080450634679	4.96770348434371	5.28747926198076	5.09068713328619	4.98075936753886	0.323914818807616	0.306177107935096	0.618638025596462
Merged-chr2-102988039-4	chr2	102987940	102988140	+	908.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85473.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	4.43563485626755	4.21057947973861	4.75750131051561	4.50776682771789	4.31964169214441	4.13038362933714	4.14800361391011	4.34948814471711	-0.584453339862599	0.143205450134282	0.421329340516185
Merged-chr10-59943749-3	chr10	59943643	59943843	+	693.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	8027.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	3.11090118273724	3.31357630634488	2.97448834348983	3.07145633771503	3.20154595233469	3.71457632028608	3.22317031745389	3.2916193329927	0.903403719084408	0.110820736103032	0.367761162528682
Merged-chr6-29557302-4	chr6	29557185	29557385	+	845.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177296, intron 17 of 22)	A-rich|Low_complexity|Low_complexity	28003.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	4.1612949926242	3.86692380168262	3.53900053231436	3.67903372100952	4.3408058849242	3.84470831099522	3.96816412851829	3.9831258240969	0.632994688767814	0.182615591504531	0.479233234647102
Merged-chr5-142794778-4	chr5	142794694	142794894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178242, intron 2 of 15)	intron (NM_178242, intron 2 of 15)	22593.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	7.3701892094646	7.29864503231912	7.05663088542249	7.72613013338674	7.47082837264625	6.98178643794181	7.55246651642251	7.20761199539897	-0.0948645699805911	0.678226986132504	0.868034533256964
Merged-chr1-171111310-5	chr1	171111241	171111441	+	977.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10320.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	4.86616623537113	5.13594502419035	5.36109650984775	4.79269634294242	5.20221521252217	5.58529437120538	4.99413629892713	5.18211717805546	0.392444171439726	0.242357220871823	0.553081694951968
Merged-chr7-25250799-4	chr7	25250717	25250917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010155)	promoter-TSS (NM_010155)	-59.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	7.3679853713659	7.50242649134778	6.98221113864526	7.11010354923206	7.42492780945917	7.73330421526876	7.68894261797747	7.39403504667747	0.416459191353656	0.0417398737694953	0.206908731460332
Merged-chr3-149101253-4	chr3	149101163	149101363	+	909.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146628.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.4236058533441	4.56807270495662	4.544344992452	4.63700933506883	4.3679093843528	4.5539371908579	4.1776908953576	3.9762450666624	-0.617175198774685	0.118754327343487	0.381272632655935
Merged-chr13-20098103-3	chr13	20097990	20098190	+	741.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	7583.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.98409309745804	3.81797870441165	3.84468835679197	4.46271129410025	3.56148608881424	3.56099681645286	3.36539327151681	3.68548756908391	-1.58027068287846	0.00242611266374038	0.0271309148927536
Merged-chr16-48832232-4	chr16	48832140	48832340	+	993.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10312.0	NM_020509	57262.0	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	4.74079297785901	4.56685244291522	4.62551948242291	5.30530378029701	4.7102939723906	4.43598163912982	4.71902493043346	4.35399297885074	-0.627908357485571	0.119130502407358	0.38190374944411
Merged-chr19-29925028-3	chr19	29924916	29925116	+	722.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133775)	promoter-TSS (NM_133775)	-97.0	NM_133775	77125.0	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	3.48903427869364	3.61233487046366	3.48952196054696	3.28175879951689	3.33368507818447	3.55014125604235	3.42168279578875	3.25497967353206	-0.255753848893745	0.623038569417266	0.838884054759699
Merged-chr7-74976894-4	chr7	74976799	74976999	+	839.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53312.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	3.77787099480354	3.83359340708995	3.65883214166147	4.11902282009165	4.25960602513964	4.00974336773518	4.06519205117728	4.28835723716772	0.751512740132748	0.098400795918106	0.343967717156649
Merged-chr16-15637890-4	chr16	15637770	15637970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011159)	promoter-TSS (NM_011159)	4.0	NM_011159	19090.0	Mm.71	NM_011159	ENSMUSG00000022672	Prkdc	AI326420|AU019811|DNA-PKcs|DNAPDcs|DNAPK|DNPK1|DOXNPH|HYRC1|XRCC7|dxnph|p460|scid|slip	protein kinase, DNA activated, catalytic polypeptide	protein-coding	7.58687419166902	7.39735641517439	7.71557190781509	7.94009611950036	7.80382270331634	7.77446429963081	7.76352125727427	7.61820707339166	0.0751590181721406	0.692829808006688	0.875149902126668
Merged-chr8-3677441-4	chr8	3677338	3677538	+	736.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025701, intron 1 of 1)	MTEb|LTR|ERVL-MaLR	961.0	NM_025701	66682.0	Mm.29090	NM_025701	ENSMUSG00000040236	Trappc5	4021401A16Rik|TRS31	trafficking protein particle complex 5	protein-coding	3.592614957636	3.6025164647675	3.64691428260535	3.49530051619931	3.77989486448358	3.65258519454795	3.82447372331568	3.59115821461862	0.441149782026586	0.342964864428788	0.651679019892597
Merged-chr13-32965354-4	chr13	32965272	32965472	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011454)	promoter-TSS (NM_011454)	-141.0	NM_011454	20708.0	Mm.36526	NM_011454	ENSMUSG00000042842	Serpinb6b	NK13|Spi12|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6b	protein-coding	4.80565922658233	4.49490934048627	4.87250356267551	4.77821324372423	4.55795293956082	4.39386869480526	4.56334450273335	4.40892427874956	-0.56353146832996	0.117364202553342	0.378877344711521
Merged-chr10-98896221-4	chr10	98896111	98896311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18431.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	5.3436501230337	5.29512142382092	5.43843068636352	5.67459966070648	5.74998076752916	5.7018036004086	6.10660926225929	5.65555813530947	0.587090053775087	0.0393191074960715	0.199621594326881
Merged-chr15-25680886-4	chr15	25680786	25680986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 2 of 40)	ORR1D2|LTR|ERVL-MaLR	58336.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	5.69494067341507	6.16974365912037	6.63631976433568	6.5777340142621	6.03717147150995	5.59645196610044	6.09512650432754	6.08096896512845	-0.550681584043508	0.0658604665816894	0.273250300234208
Merged-chr2-29890404-4	chr2	29890285	29890485	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013615, intron 1 of 16)	CpG	322.0	NM_013615	18286.0	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	4.65385022041661	4.74835046719754	4.3351425446412	4.65065617445613	4.71760420380286	4.86823333592016	4.78407996345479	5.11948850929765	0.550364029743262	0.117121065712817	0.378565658581541
Merged-chr19-6298883-2	chr19	6298783	6298983	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010119, exon 5 of 5)	3' UTR (NM_010119, exon 5 of 5)	-7574.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	2.97324283925764	3.39296571459534	2.83289186828098	2.55610947339976	2.9730873313869	3.15322323032082	3.08908561157992	3.51223283165215	0.841153686185218	0.215689841301929	0.521930552916199
Merged-chr7-48943927-4	chr7	48943815	48944015	+	889.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-15158.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	4.7466239284636	4.62847828781941	4.59926066188728	5.07002972391408	4.38363713331672	4.25862176130806	4.4554142847943	4.38331485438276	-0.939047686240657	0.0130559476132687	0.0952746868120617
Merged-chr4-150248249-4	chr4	150248146	150248346	+	795.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023119, intron 11 of 11)	intron (NM_023119, intron 11 of 11)	10922.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	3.68770619228421	3.69383713028232	3.63162296692626	3.6848899903739	3.74078772422823	3.69022920869273	4.08977776134006	4.06620654194109	0.670469240614978	0.14318627381156	0.421325166747956
Merged-chr4-32800343-4	chr4	32800243	32800443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175364)	promoter-TSS (NM_175364)	84.0	NM_175364	108755.0	Mm.1182	NM_175364	ENSMUSG00000045854	Lyrm2	2610208E05Rik	LYR motif containing 2	protein-coding	6.18265501427788	6.80890530806382	7.20094305234522	6.50111019118184	6.19004776157084	6.10832240675097	6.27238214879487	6.31935704038777	-0.733373214302216	0.00741842212012341	0.0634963766339904
Merged-chr11-55458381-4	chr11	55458275	55458475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	2833.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	6.41632371316485	6.09706465306434	6.23622481166753	6.22520044533136	6.27460641221015	6.35273777753808	6.45003326379543	6.37867990272013	0.177142349989903	0.423694703516092	0.715570066410379
Merged-chr5-92444980-2	chr5	92444880	92445080	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 11 of 11)	intron (NM_007644, intron 11 of 11)	-9781.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	2.41156003468595	2.35857859974895	2.7512866425843	2.43091521784124	2.68308179657528	2.73296554885955	2.74037233100913	2.86401713658848	1.33959735398835	0.0496449852177047	0.230733294339602
Merged-chr18-27022100-4	chr18	27022014	27022214	+	728.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1267957.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	3.73385070554793	3.78100848241	3.67761261980272	3.80106725526551	3.83632391816129	3.79734196364798	4.41802412698781	3.78661972687364	0.656537013512333	0.163348631423365	0.45295851946253
Merged-chr4-116672953-4	chr4	116672864	116673064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12635.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	7.00512026708349	7.22002888492676	6.99321511027651	7.43516520923804	7.34350917487167	7.24731235425271	7.4335162599233	7.27062952004714	0.18031142242553	0.36570186673954	0.670400050804928
Merged-chr7-46717177-4	chr7	46717058	46717258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1482.0	NM_011315	20210.0	Mm.14277	NM_011315	ENSMUSG00000040026	Saa3	AV098916|Saa-3|l7R3	serum amyloid A 3	protein-coding	5.02668276860297	5.58962855292245	5.65361158528377	5.43991405624096	5.16550507950093	5.38327468596996	5.47622298333931	5.36028143918035	-0.188214470334414	0.534336972633971	0.789138445360665
Merged-chr9-108079318-4	chr9	108079219	108079419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032543)	promoter-TSS (NM_032543)	-18.0	NM_001311152	84585.0	Mm.379272	NM_032543	ENSMUSG00000041528	Rnf123	BC003945|Kpc1	ring finger protein 123	protein-coding	5.57943060323499	6.05245354120474	5.33889419911209	5.40476078361704	5.77333737118534	5.80961105046095	5.65714421852323	5.84765178057639	0.251766114657687	0.388418583630769	0.688981838974675
Merged-chr17-34000366-4	chr17	34000263	34000463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347346)	promoter-TSS (NM_001347346)	-16.0	NM_001347346	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	8.65005673928585	9.07904657168713	8.66026998558449	8.12386474461385	8.75589118445919	8.96819514383052	8.61630259065178	8.24651562779901	0.00427296316409156	0.985366032177214	0.994679311230532
Merged-chr2-70838750-4	chr2	70838713	70838913	+	743.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13333.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	3.36809407735798	3.40732188942361	3.48282572037575	3.53312355003134	3.62807266040884	3.48089212783387	3.46947148859585	3.58580714367361	0.300612099556421	0.540536796724666	0.792805865527817
Merged-chr5-66152433-4	chr5	66152321	66152521	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127382)	promoter-TSS (NM_001127382)	-467.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.65359228777042	5.26132136085783	5.26373503704652	5.44589045056655	6.03154734605921	5.9520559588573	5.83852278037821	5.90737846751214	0.864541474444012	0.00101232957658049	0.0135827505555763
Merged-chr8-66494996-3	chr8	66494896	66495096	+	958.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8466.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	4.56047221581363	4.79744285587205	4.56119320142574	4.32351454397788	5.18181926980725	5.16967332500923	4.73971680925555	4.4208948378829	0.746730814625496	0.0531887545216757	0.240528739396338
Merged-chr17-84238385-3	chr17	84238287	84238487	+	991.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 31 of 37)	intron (NM_183021, intron 31 of 37)	-50440.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	4.44634054578137	4.79541140765009	4.91730301734434	5.02217248428044	4.00140538646056	4.2268581545744	4.42681211867534	4.30607831001828	-1.34179808327304	0.000750795466122462	0.01070744750213
Merged-chr4-63403323-4	chr4	63403215	63403415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001045514, exon 1 of 22)	5' UTR (NM_001045514, exon 1 of 22)	130.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	6.1199732299458	6.6004943097794	6.36365680557024	5.76662145353334	5.98893880189941	6.33724438985442	6.04806411126025	5.98683606395023	-0.221748372056475	0.43107001593028	0.721463769754788
Merged-chr12-3913045-4	chr12	3912951	3913151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001271753, exon 23 of 23)	3' UTR (NM_001271753, exon 23 of 23)	21307.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	5.93977883792382	5.8371171969408	6.38991433977711	6.46250934480052	5.95630149354413	5.63548969121433	5.81766316798478	5.63333992550356	-0.6656795958054	0.0185530234456477	0.121800634467666
Merged-chr17-84466257-4	chr17	84466182	84466382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183021)	promoter-TSS (NM_183021)	-74.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	7.93085974384026	7.94372608635537	7.44775989408615	7.81344201338998	7.9932986469034	8.27448137380757	8.0208544712586	7.86918368120739	0.316443576572387	0.0943945349242837	0.33612994079664
Merged-chr1-133134461-4	chr1	133134362	133134562	+	858.837524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133819, intron 1 of 1)	intron (NM_133819, intron 1 of 1)	3296.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	3.96537899951133	4.16072027101042	3.96593070822739	3.81779929383335	4.47965609887662	4.70700783148257	4.24308963926515	4.34516871853056	1.19344624771593	0.00316609440469622	0.0332879517920048
Merged-chr11-20934902-4	chr11	20934813	20935013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-103805.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	5.72158842889954	5.54192676074372	5.94471052810652	5.95100670712539	5.50743702930987	5.50514083445892	5.53965057460466	5.50757415096634	-0.495463959445694	0.0659011583651667	0.273323537540741
Merged-chr2-165969022-4	chr2	165968930	165969130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23607.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	6.97151325546806	7.40596102444544	6.77615132412647	6.7032529817889	7.03747581953483	7.36385280416818	7.2953648585518	7.07961202155943	0.284556429092202	0.219146742900888	0.52662545621007
Merged-chr5-142821837-4	chr5	142821710	142821910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4423.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	5.56650049665525	5.21360026640497	5.04997648094884	5.04736431366276	5.05605142057307	5.22603578081457	5.25089426146014	5.21266624398318	-0.0765950160087728	0.806455483421024	0.925422083168378
Merged-chr9-108649913-4	chr9	108649808	108650008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011790)	promoter-TSS (NM_011790)	-500.0	NM_001357286	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	6.02256463356113	6.03292241616624	5.95630054332768	5.95691188357639	6.35089825841902	6.22084893726981	6.21236417525291	6.18345492197516	0.401209002422481	0.0752137844194345	0.296026649775556
Merged-chr6-54248494-4	chr6	54248400	54248600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 6 of 12)	L1MB5|LINE|L1	-16358.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	5.35961440198662	5.26849443166506	5.47389954763373	5.68037660697432	4.90296822297805	5.34630921250709	5.33382427813624	5.66982480894797	-0.238911836549251	0.458809283291434	0.741611090366995
Merged-chr11-98955286-4	chr11	98955187	98955387	+	891.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-5184.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	4.17872864459819	3.8827678809815	4.17936416281161	4.20740619271849	4.28807775235738	4.05445330208944	4.0687639083782	4.34478059954114	0.195780370300457	0.634881952328473	0.845499285207272
Merged-chr7-90023669-3	chr7	90023543	90023743	+	968.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5516.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	4.69817733342667	4.65094658433124	4.45576995343302	4.5284759890721	4.69028576032511	4.44373222018935	4.52138077272947	4.86767464326024	0.135029338287515	0.705393644050968	0.881685774219734
Merged-chr8-4250723-4	chr8	4250542	4250742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195258, intron 5 of 6)	intron (NM_001195258, intron 5 of 6)	2428.0	NM_001195258	100044509.0	Mm.439193	NM_001195258	ENSMUSG00000089736	Tgfbr3l	Gm14378	transforming growth factor, beta receptor III-like	protein-coding	4.50944005830029	4.4965654750175	4.77188261020719	4.62903678573475	4.50802921993804	4.76096931518885	4.31442133109761	4.42143276000357	-0.218414818631905	0.551961198092642	0.799236042049681
Merged-chr8-105171575-4	chr8	105171496	105171696	+	954.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161456, intron 2 of 4)	CpG-14413	922.0	NM_001161458	12400.0	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	5.07016653546329	4.61777759794005	5.13235360578099	4.92345938603183	4.57296275500661	4.75913444140152	5.0459517689718	5.18715475283374	-0.0774220804861721	0.829133926604386	0.934373891925107
Merged-chr5-112298827-3	chr5	112298719	112298919	+	953.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	22128.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	4.124616389181	3.95763097750804	4.03145420093047	4.47220358536825	3.79432844208958	3.94185906683654	3.9144286875035	4.29146340088753	-0.481403136715483	0.291630620231514	0.60397381120949
Merged-chr6-15739324-4	chr6	15739243	15739443	+	862.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 2 of 4)	ORR1E|LTR|ERVL-MaLR	18682.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	4.27164245391088	4.21412907320076	4.17919070404712	4.45702558346476	4.19576376604794	4.48728357550664	4.45799670478547	4.12760656867054	0.0552066730464365	0.889744608477703	0.958662036977906
Merged-chr4-136895754-6	chr4	136895596	136895796	+	943.1527710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007572)	TTS (NM_007572)	-2782.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	4.60359938096722	4.44628960216085	4.5386715119213	4.0398993807621	3.80204239085414	3.62729214408838	3.6973426293395	3.99528612545113	-1.69364018516092	0.000396802276058382	0.00640453270012689
Merged-chr5-33274661-4	chr5	33274586	33274786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198860, intron 1 of 9)	CpG	318.0	NM_001310535	13016.0	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	5.87931420534663	6.05527783749893	6.06069441550988	5.62760255149615	6.03530680197416	6.70166371231912	5.98707919130733	6.0136398919682	0.480755258564744	0.0899561134131809	0.327501723524976
Merged-chr9-70761223-4	chr9	70761124	70761324	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007399, intron 9 of 15)	intron (NM_007399, intron 9 of 15)	82242.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	5.17309405781773	4.90925348882242	5.34848986999439	5.15281269571386	5.14710662347807	5.2834340577393	5.14847047247013	4.77131920004161	-0.0945683636716382	0.767594264598926	0.909027746453384
Merged-chr6-100883414-2	chr6	100883314	100883514	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	49776.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	3.16061881948752	3.09417667411108	2.9150067280975	2.91391900910572	2.9810222622784	3.15403853154775	3.09205590962817	3.21402983626693	0.366917910399659	0.520479181164646	0.780787600139836
Merged-chr7-16848745-2	chr7	16848645	16848845	+	980.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252458, exon 5 of 19)	exon (NM_001252458, exon 5 of 19)	5680.0	NM_178900	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	2.64119723485019	2.59513480065011	2.5811321576743	2.38208843508803	2.57959904671754	2.62247007772382	2.3015155319242	2.22800336857602	-0.568813325370792	0.453247393743539	0.737393345049745
Merged-chr12-111967004-4	chr12	111966846	111967046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361914)	promoter-TSS (NM_001361914)	63.0	NM_027360	70257.0	Mm.318	NM_027360	ENSMUSG00000021290	2010107E04Rik	9430003J03Rik|AU043134|AV124504|Mp68	RIKEN cDNA 2010107E04 gene	protein-coding	6.26196287361006	6.50481116025645	6.51316794508226	6.14558605842962	6.52770746569369	6.51622457667439	6.28864767334659	6.74387110565584	0.257575618668622	0.268330912936805	0.580107684368438
Merged-chr9-25559401-2	chr9	25559311	25559511	+	646.166626	f0_balb.idr|f0_c57.idr	intron (NM_026189, intron 3 of 7)	Lx4B|LINE|L1	77814.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	3.68817405774309	3.45339555336304	3.79112126638449	3.49496482866879	3.99858329698972	3.80782297836399	3.91291324537374	3.5164031244595	0.669719475068809	0.16405279793526	0.453991450730294
Merged-chr6-129491473-4	chr6	129491385	129491585	+	890.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301096, intron 1 of 3)	intron (NM_001301096, intron 1 of 3)	15680.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	4.34544870177342	3.87290325337907	4.17178923386511	4.5609374378031	4.1935819952235	3.91745844035407	4.24285128176083	4.38335367717169	-0.196294460894723	0.658880846492158	0.858050748714077
Merged-chr1-165764250-4	chr1	165764142	165764342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011804, intron 1 of 3)	intron (NM_011804, intron 1 of 3)	484.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	5.53844803805476	6.01365304300126	5.64519027334918	5.32576395788352	5.7261948902942	5.44262659126948	5.71349570183455	5.29360515010582	-0.140776106034395	0.646702320221582	0.851401409677112
Merged-chr7-12909669-4	chr7	12909549	12909749	+	984.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001001447)	TTS (NM_001001447)	11840.0	NM_001290441	232878.0	Mm.40706	NM_001001447	ENSMUSG00000054715	Zscan22	AW227621|D530006B18Rik|Hkr2	zinc finger and SCAN domain containing 22	protein-coding	5.31281046299234	4.78233984122532	4.6933200797066	5.00119527101409	4.91735911896233	5.14620984817135	5.31366903880975	5.19606347285137	0.335400839633468	0.3174532301865	0.629380075523506
Merged-chr16-30389337-4	chr16	30389249	30389449	+	902.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128094)	promoter-TSS (NM_001128094)	-819.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	3.93325864639724	4.2194040953602	4.19394575009989	3.89788183690996	4.42497736859998	4.11541476613162	4.50315673278897	4.69154893202736	0.955957970675736	0.0194344331943496	0.125494286522781
Merged-chr3-152714068-4	chr3	152713970	152714170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178016)	promoter-TSS (NM_178016)	-30.0	NM_178016	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	7.47539287742488	7.57861566403175	7.06318966132254	7.63202874597798	7.68803358147123	7.40235655069037	7.6884447601495	7.87466949867889	0.278360592493105	0.175184911788695	0.469895860959054
Merged-chr4-137465344-4	chr4	137465218	137465418	+	995.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3485.0	NM_008305	15530.0	Mm.273662	NM_008305	ENSMUSG00000028763	Hspg2	AI852380|Pcn|Plc|per	perlecan (heparan sulfate proteoglycan 2)	protein-coding	5.03253884133264	5.36533845837772	5.06920307994183	5.33356841360286	5.46945298806653	5.09804396975273	5.2690969417079	5.29167235449487	0.139269701577992	0.646341045457675	0.851295585787822
Merged-chr11-69418183-4	chr11	69418099	69418299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4524.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	7.05385121148366	7.81886173041633	7.13088483163718	7.00859706433383	7.74692765460962	7.59234574993754	7.53381755201069	7.50401117704483	0.402428897569219	0.0854127173812268	0.318204211894677
Merged-chr10-82913920-4	chr10	82913828	82914028	+	827.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	47302.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	4.65547313776487	4.69842486660775	4.1604625636395	4.65711357840114	4.09476222661543	4.00552258658146	4.14298157360572	4.38805742172598	-0.96800707314926	0.0187367894171392	0.122557060643498
Merged-chr6-124478547-4	chr6	124478442	124478642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13758.0	NM_153508	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	6.2532121432034	6.56202440893296	5.81045416553121	5.89358712743999	6.47332297784725	6.39189612236798	5.97622478614663	6.19241851964887	0.176877893374834	0.526077523191136	0.783529786428865
Merged-chr11-103171039-4	chr11	103170939	103171139	+	997.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077698)	promoter-TSS (NM_001077698)	-99.0	NM_001077698	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	5.38793367621481	5.32959597110358	5.04110581224023	5.45984144458927	5.22274055696396	5.14432182176188	5.08710278273653	5.38509581015324	-0.202385581088752	0.500557980787188	0.768850577358824
Merged-chr1-119917125-4	chr1	119917006	119917206	+	926.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3938.0	NM_175106	66343.0	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	4.34964710364873	3.80767904183388	4.51374710443299	4.80350878417351	4.4033912075134	4.28983979372374	4.19439784396748	4.47190144097523	-0.200237235701475	0.660054283846408	0.858704732057902
Merged-chr10-122576762-4	chr10	122576674	122576874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6883.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	5.44832826792791	5.66915970676816	5.50939994971146	5.75420273727167	5.53072339531152	6.08235824180214	5.79093594600269	5.9472227127044	0.375721871676722	0.177106176808651	0.472356136056017
Merged-chr16-55974595-4	chr16	55974503	55974703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027965)	promoter-TSS (NR_027965)	14.0	NR_027965	66391.0	Mm.472722	NM_133677	ENSMUSG00000102101	Zbtb11os1	2310061J03Rik	zinc finger and BTB domain containing 11, opposite strand 1	ncRNA	8.09803295080714	8.13329396638797	8.03983969797349	8.13968712697824	8.3489053643008	8.09673270788575	8.58877290222066	8.15078198305957	0.265990885555464	0.124629478974865	0.391951700865256
Merged-chr3-59205301-4	chr3	59205193	59205393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	5589.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	5.64733801564527	5.88305955982857	5.80246809990642	6.04808959946191	5.94638571351899	6.00116596312721	5.8431499671682	5.58858957146055	-0.0203574509566759	0.938319170952434	0.977613809965504
Merged-chr4-141845510-1	chr4	141845410	141845610	+	586.5	f0_c57.idr	intron (NM_001033875, intron 1 of 8)	intron (NM_001033875, intron 1 of 8)	849.0	NM_001033875	76701.0	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	3.25642590957382	3.5197878396907	3.05606457746625	2.90670082271423	3.42809121216726	3.37193308631375	3.56928266045296	3.67615157910534	1.11366535174133	0.0496204698702693	0.230687719222147
Merged-chr1-120528241-1	chr1	120528141	120528341	+	669.0	f0_c57.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-23217.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	2.66042880341147	2.80359954829692	2.89082542874311	2.57299743771339	3.32896615580351	3.4837411982293	3.34861523361312	3.25899144715439	2.7591099269339	5.90342393234936e-06	0.000172001560409617
Merged-chr5-130170788-4	chr5	130170684	130170884	+	972.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1035.0	NM_001199059	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	4.57754003671945	4.45900456550925	4.44688299991553	4.81261277841895	4.8090610065493	4.75202684930323	4.63728320182132	4.8708456213427	0.358299991966699	0.314818864852244	0.626793431828981
Merged-chr4-137345964-4	chr4	137345867	137346067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009861, intron 1 of 5)	ORR1D2|LTR|ERVL-MaLR	11792.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	5.78248788403683	6.01782482977664	5.59052917770679	6.22565765932049	6.34487145598509	6.01020234490393	5.94289502605832	5.96911982626666	0.217984007283774	0.430952528936009	0.721325279470979
Merged-chr6-32519565-3	chr6	32519452	32519652	+	801.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	8411.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	3.27083389693938	3.56393835907123	3.38671887444638	3.65654994894183	3.15691538059644	3.18595679369617	3.1988154722032	3.49062069989072	-0.80959143214156	0.142425684213993	0.420007365317472
Merged-chr6-29271174-4	chr6	29271076	29271276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1312.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	8.63939192275145	8.69724751613587	8.60928405432567	8.59909906825094	8.50260227570554	8.75488160773731	8.480355876311	8.4069345598882	-0.119609452471314	0.436276840378523	0.72505818409614
Merged-chr4-130809246-2	chr4	130809146	130809346	+	671.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	16709.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	2.63209689911249	2.17230358651735	2.44314260513846	2.05212926265535	2.28195117255788	2.55135660274348	2.56164129331842	2.50795752620853	0.764066701773442	0.334730210803904	0.645177548127788
Merged-chr8-123287549-4	chr8	123287454	123287654	+	823.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016925, intron 26 of 42)	intron (NM_016925, intron 26 of 42)	31022.0	NM_016925	14087.0	Mm.6536	NM_016925	ENSMUSG00000032815	Fanca	AW208693|FACA	Fanconi anemia, complementation group A	protein-coding	4.3265299985373	4.40494534541675	4.23405833161653	4.23003603078575	4.48200732113708	4.50030301019032	4.65546160498278	4.27885540590872	0.444107178236041	0.234613533706235	0.544447848974703
Merged-chr16-64873969-4	chr16	64873876	64874076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21975.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	6.3500438150531	5.94029077748019	6.61494606123621	6.46076741831706	6.52876656245907	6.2655075768116	6.75996494352849	6.41789263166636	0.209924084091989	0.402356288462247	0.69988558788989
Merged-chr19-6895765-4	chr19	6895661	6895861	+	923.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44-int|LTR|ERVK	-13937.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	5.07465356199618	5.05021217902011	4.63877192867982	4.22854748013074	5.07591637270916	4.89948237036467	5.05021219646887	4.87238334901303	0.402739240876749	0.294907460250266	0.607033490837296
Merged-chr8-47693344-3	chr8	47693244	47693444	+	771.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18185.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	2.91879071323782	3.12308689792854	2.71181763221799	2.97509982622579	2.95729422726381	3.02705266179209	2.97104158616478	3.20304025805617	0.404075399954704	0.504312090931404	0.770655921364685
Merged-chr5-97082229-4	chr5	97082151	97082351	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198422, exon 7 of 7)	3' UTR (NM_198422, exon 7 of 7)	29345.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	5.0409033269408	4.87854246385465	5.04174590152211	5.21129346970093	5.49554556405679	4.72709515993522	5.23724954176391	5.28850993494485	0.320745211889533	0.339947236908995	0.648997231458602
Merged-chr14-65902970-3	chr14	65902869	65903069	+	808.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50775.0	NM_172604	219151.0	Mm.344095	NM_172604	ENSMUSG00000034463	Scara3	APC7|C130058N24Rik|CSR|CSR1|MSLR1|MSRL1	scavenger receptor class A, member 3	protein-coding	3.36766725294065	3.49892844110271	3.69017890907345	3.26531432062402	3.97526130317176	4.41246632680568	3.97832661540663	4.16457517544579	2.02754243609773	1.91139143357362e-05	0.000488688688399197
Merged-chr10-41393641-3	chr10	41393550	41393750	+	787.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56708.0	NM_001277229	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	3.44361358106932	3.45900823570791	3.65013436571079	3.28167735310323	3.34135876592022	3.24221053876379	3.37426295284608	3.73933615592802	-0.0662637368132041	0.901017226075738	0.96332884045309
Merged-chr11-29801958-4	chr11	29801845	29802045	+	893.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 21 of 41)	MLT1E1A|LTR|ERVL-MaLR	23723.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	5.2358484765287	4.67387448434268	5.41480930010355	5.16561706325369	4.90055666051517	4.60451673167347	4.67632604083208	4.46778185237455	-0.932996140340178	0.0117454440758508	0.0885142367182516
Merged-chr4-129803584-4	chr4	129803492	129803692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16887.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	6.87646978710633	6.87327300917182	6.42663435147111	6.62305800636222	6.82514790040252	6.94470110813231	6.76216662419764	6.73488598334683	0.153312072209747	0.470038823979723	0.74885746888454
Merged-chr16-36669707-4	chr16	36669598	36669798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3621.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	5.27534588293934	5.36095645102743	5.93730314335631	5.90629657132537	5.60464327480601	5.4867837816483	5.54460927597098	5.20424058144294	-0.328912858093178	0.295395406179515	0.607379595804165
Merged-chr7-6729619-3	chr7	6729519	6729719	+	851.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290994)	promoter-TSS (NM_001290994)	800.0	NM_008817	18616.0	Mm.389800	NM_008817	ENSMUSG00000002265	Peg3	AL022617|ASF-1|End4|Gcap4|Pw1|Zfp102|mKIAA0287	paternally expressed 3	protein-coding	3.38497161213668	3.54896638058328	3.53667121521333	3.38235107967828	3.06603995844815	3.12659775802603	3.31770010806018	2.94301257813295	-1.32452873110567	0.0209607679174369	0.132184504261118
Merged-chr5-123620231-4	chr5	123620129	123620329	+	818.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 12 of 18)	intron (NM_001359224, intron 12 of 18)	-47214.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	3.75572630950782	3.47007948428656	3.59388629681626	3.87273081558628	3.62159172926397	3.71114552774168	3.78997703221953	4.02698673082563	0.2940680994356	0.544635045013013	0.795384948727017
Merged-chr12-69892659-1	chr12	69892559	69892759	+	982.0	f0_balb.idr	promoter-TSS (NM_178628)	promoter-TSS (NM_178628)	-446.0	NM_178628	73991.0	Mm.474462	NM_178628	ENSMUSG00000021066	Atl1	4930435M24Rik|Adfsp|Fsp1|Spg3|Spg3a	atlastin GTPase 1	protein-coding	3.9898247104035	4.37753670193412	4.59090315517667	3.98173729868224	4.07186662680635	3.76317235032907	3.69346071223739	4.17769822338916	-0.803556571927487	0.0931023739152734	0.333783311822063
Merged-chr2-127247825-4	chr2	127247716	127247916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025296)	promoter-TSS (NM_025296)	0.0	NM_025296	26371.0	Mm.45179	NM_025296	ENSMUSG00000003662	Ciao1	AW210570|Wdr39	cytosolic iron-sulfur protein assembly 1	protein-coding	8.67993500045463	8.53396283382157	8.19013981936296	8.33161117439871	8.43444748269022	8.55222270690765	8.44766944348393	8.10137434423818	-0.0640321338394509	0.726824879167035	0.891273682846738
Merged-chr11-89081413-4	chr11	89081310	89081510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033266, intron 2 of 3)	L2|LINE|L2	7569.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	5.52341395676162	5.92979708448874	5.3686884097597	5.75232473594479	6.10416525813945	5.48178145655091	5.91470866209574	5.94090614047197	0.356011837629553	0.217918305244825	0.524812112221229
Merged-chr19-17345065-4	chr19	17344939	17345139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	-5534.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	6.38278268983846	6.27204096520903	6.36574927371369	6.50774388596746	6.73256865318867	6.46718810784034	6.53452950715237	6.41487957814204	0.232927631299656	0.287234262743159	0.598979176834825
Merged-chr7-129398905-3	chr7	129398813	129399013	+	802.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	141819.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	3.21255279310394	3.05400097443445	2.92587105100681	3.64271201255216	3.22803802446394	3.51077731565697	3.67835412622249	3.73700354977032	1.01359484249175	0.119126145454969	0.38190374944411
Merged-chr11-101069997-4	chr11	101069916	101070116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013792)	promoter-TSS (NM_013792)	-78.0	NM_013792	27419.0	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	7.59672792226323	7.47587015798852	7.2497918851062	7.28354970988928	7.60930153275391	7.50273661230625	7.27855416931275	7.44040788746487	0.0853728653473563	0.65028816253239	0.853226674764141
Merged-chr7-47055975-4	chr7	47055891	47056091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5351.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	7.69361000688147	7.60441172721061	8.52247383272818	8.23980053616606	7.80457625550712	7.38444437300666	7.79286427376138	7.78707504183563	-0.476735146761691	0.0481629575054853	0.226477581573822
Merged-chr16-18733745-4	chr16	18733656	18733856	+	944.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-43091.0	NM_013805	12741.0	Mm.22768	NM_013805	ENSMUSG00000041378	Cldn5	AI854493|MBEC1|Tmvcf	claudin 5	protein-coding	4.83176076052283	5.42644087823862	4.79182113957832	4.92121752198462	5.4069197933171	4.929318034931	5.2715886784151	4.98042456089	0.286059324203493	0.410832506142759	0.706258832381003
Merged-chr13-41381624-4	chr13	41381534	41381734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 2 of 7)	intron (NM_001111324, intron 2 of 7)	-22633.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	5.77852263993247	5.23092411465265	5.71184527986787	5.92294299712886	5.22122252618153	5.41194596306521	5.33792277877568	5.53265710492673	-0.561429001715445	0.0638486279559176	0.268360288708253
Merged-chr10-88337201-2	chr10	88337101	88337301	+	986.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 3 of 6)	URR1B|DNA|hAT-Charlie	19874.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	2.87448323061069	2.66879245084343	2.93483511650947	2.84307932574765	2.71562023982225	2.91916747092059	2.98012142478242	2.87339726486987	0.174918533544858	0.776482809249374	0.912932991254018
Merged-chr11-100938836-3	chr11	100938731	100938931	+	888.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_213660, intron 1 of 23)	intron (NM_213660, intron 1 of 23)	709.0	NM_213660	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	4.19653182665208	4.23162272678639	4.04064528918422	3.81772236236354	4.63560045960605	4.67418491629047	4.31733347912288	4.7459638835935	1.28579930513456	0.00116351675071646	0.0152015342876738
Merged-chr13-65097240-4	chr13	65097148	65097348	+	909.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083901, intron 2 of 12)	ORR1D2-int|LTR|ERVL-MaLR	15734.0	NM_001083901	66631.0	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	4.31765279033827	4.81012984981104	4.40929100621241	3.86552351321702	4.57540598124376	4.70729435162719	4.62656598671732	4.31564304478977	0.397879681351047	0.3588436581844	0.664778844045271
Merged-chr12-98835649-4	chr12	98835565	98835765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 21 of 43)	intron (NM_001081191, intron 21 of 43)	64643.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	5.64937222728049	6.13382327120377	5.62256588348777	5.19820273505076	6.25522893788701	6.05206562466205	5.97676885161004	5.9395647172468	0.615262440020017	0.0415131721772938	0.206345396816173
Merged-chr7-28369964-2	chr7	28369864	28370064	+	869.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_138752, intron 4 of 18)	intron (NM_138752, intron 4 of 18)	2698.0	NM_138752	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	2.81944536482572	2.489276956314	2.7584623405346	2.45328882728035	2.64094785515727	2.80227489080955	2.7482563520799	2.93265920865603	0.740354368165289	0.266373841208726	0.578085840707737
Merged-chr13-34991696-4	chr13	34991597	34991797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110331, intron 2 of 9)	MER77B|LTR|ERVL	2447.0	NM_011868	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	5.51984218645411	5.94297588632249	5.14921257806016	5.65363331729627	6.15132000543376	5.8617422673464	5.82512288516486	5.85088007131804	0.537809524979781	0.0645887769049086	0.270163045854997
Merged-chr1-131867916-3	chr1	131867796	131867996	+	932.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144875, intron 2 of 5)	intron (NM_144875, intron 2 of 5)	619.0	NM_144875	226422.0	Mm.34027	NM_144875	ENSMUSG00000026433	Rab29	Rab7l1	RAB29, member RAS oncogene family	protein-coding	3.87836756183449	3.98656636822877	4.2411182580591	3.85492343388971	3.80885761314056	4.000049722976	4.05568627632362	4.07112608575843	-0.0223838175500139	0.959088777656429	0.985377888348831
Merged-chr6-128803243-4	chr6	128803117	128803317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14576.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	8.79696406281646	8.76975693527566	9.15975168713486	8.81217054947202	8.79121064717613	8.87883026530287	8.91855319366006	8.73020552835348	-0.0762029221471248	0.633696503302446	0.84482185028497
Merged-chr5-93198400-4	chr5	93198282	93198482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017367, intron 2 of 6)	intron (NM_017367, intron 2 of 6)	8113.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	5.99956902287132	5.88313219884642	5.74605069168191	6.27280941627134	5.95259859865198	5.76034626299858	5.71702427235077	5.79221276467725	-0.311243416230704	0.240797962521233	0.55135462378061
Merged-chr4-135947943-3	chr4	135947841	135948041	+	903.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357529, exon 1 of 9)	5' UTR (NM_001357529, exon 1 of 9)	535.0	NM_001357530	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	3.63033626746854	3.57946966858735	3.4102307613787	3.69374375815662	3.61772610246074	3.74774082618143	3.33756665345992	3.40855145315064	-0.160803019494569	0.750521195001765	0.901823997485197
Merged-chr8-105693841-2	chr8	105693741	105693941	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357333, intron 29 of 38)	CpG	-7307.0	NM_001047436	56513.0	Mm.472753	NM_019695	ENSMUSG00000005699	Pard6a	0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40	par-6 family cell polarity regulator alpha	protein-coding	3.14972299740917	3.18492286065574	3.0907400628642	3.18800881902953	2.91741259845567	3.13752190296627	3.07984845134771	3.25937701337128	-0.230773677033286	0.683186288058656	0.870271715831715
Merged-chr18-12661336-1	chr18	12661236	12661436	+	610.0	f0_balb.idr	intron (NM_028341, intron 1 of 13)	intron (NM_028341, intron 1 of 13)	17803.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	3.3507892316782	3.18933637857436	3.73565598753105	3.53727851149862	4.05380543171884	3.46586016832171	3.621775949208	3.52808224959409	0.713398140516963	0.189894609472707	0.48897703139117
Merged-chr1-74375147-4	chr1	74375049	74375249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013612)	promoter-TSS (NM_013612)	-54.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	8.20652800637564	8.40963476877717	8.14053890680368	8.17769880380774	8.19576436758213	8.39147618909663	8.22152732240706	8.18445667300926	0.0142591631296381	0.92879184191858	0.974204248624727
Merged-chr7-64349853-3	chr7	64349762	64349962	+	940.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177893, intron 11 of 13)	intron (NM_177893, intron 11 of 13)	24233.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	4.46211566482118	4.31126206526582	5.08490036827815	5.4482839556373	3.97095851989609	4.23984788503259	4.64543438289874	4.21713968566565	-1.38230970885326	0.0035927794827775	0.0368110462214874
Merged-chr1-134304852-4	chr1	134304749	134304949	+	948.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001144855, intron 23 of 28)	intron (NM_001144855, intron 23 of 28)	14845.0	NM_031189	17928.0	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	5.03256712089136	4.68304561374057	4.6308399464441	5.3086973419945	4.60874031154386	4.6753346502689	4.94483631536559	4.86273084984568	-0.379724103667799	0.30694955377146	0.619284645348604
Merged-chr9-95497104-4	chr9	95496952	95497152	+	874.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357977, intron 2 of 25)	Lx9|LINE|L1	14944.0	NM_001357975	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	4.14780253080966	3.85155243442467	4.46644190462779	4.36281069156356	4.03534776174215	4.02208873875638	3.82916500002931	4.09988379826157	-0.599931913853061	0.174631557965488	0.469069910997419
Merged-chr18-35748478-4	chr18	35748392	35748592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-7938.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	6.15367038262741	6.04658561388382	5.97053604107323	6.00567000233231	5.85629670063438	6.10117044565843	5.55968138993035	6.13118429364188	-0.183699957885544	0.473120955952127	0.751053562324356
Merged-chr8-27192410-3	chr8	27192308	27192508	+	876.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10139.0	NM_029674	76615.0	Mm.272794	NM_029674	ENSMUSG00000039720	Got1l1	1700083M11Rik	glutamic-oxaloacetic transaminase 1-like 1	protein-coding	3.40054566964496	3.66974132651593	3.215406342444	3.3928633519153	3.60615055536723	3.45505473060173	3.59781370779717	3.34032036675137	0.258460294181863	0.618102098687162	0.835863676650469
Merged-chr7-97741205-4	chr7	97741091	97741291	+	880.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2944.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	4.50986847075671	4.45771425613659	4.73300677979911	4.7250911508403	4.47166555875678	4.51212531812388	4.06625181154955	4.38006227707909	-0.561117625606472	0.143377170300259	0.421642852619491
Merged-chr12-3820803-4	chr12	3820707	3820907	+	859.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	13647.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	3.7950802894266	3.81869726830007	3.89259015853532	3.84858595577937	3.91601397432267	3.56630153563096	3.8288459973672	3.63295077848656	-0.252830684745607	0.582934079932175	0.816821881334209
Merged-chr3-25713334-3	chr3	25713239	25713439	+	732.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357095, intron 4 of 6)	RLTR26|LTR|ERVK	440647.0	NM_001163387	192167.0	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	3.81794959726783	3.78517975345844	3.8185229322903	3.84167768137978	3.46648570059725	3.55345933575638	3.48771919667582	3.66708869692786	-0.872291931666987	0.065895419428314	0.273323537540741
Merged-chr13-34037645-4	chr13	34037545	34037745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026512)	promoter-TSS (NM_026512)	4.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	5.61132638095345	5.46542709904508	5.4468862719414	5.78490233966093	5.28616071882682	5.46855790727628	5.79588764351834	5.70759119800517	-0.0440388974545763	0.879172952032514	0.954746715269166
Merged-chr1-164153024-4	chr1	164152924	164153124	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037987)	promoter-TSS (NR_037987)	-807.0	NR_037987	100503816.0	Mm.398579	NR_037987	ENSMUSG00000086593	Gm16548	-	predicted gene 16548	ncRNA	5.00467288692894	5.30863719847294	5.4704193936262	5.31952190614036	5.3240279747929	5.10731015338088	5.33542428747345	5.20871811365286	-0.0677743689312213	0.819845732418454	0.931038192981049
Merged-chr9-21152865-4	chr9	21152744	21152944	+	900.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2938.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	3.98559195891688	3.90182534646252	3.67836461468987	3.60640261644599	4.11216409394896	4.1549898512421	3.72032552502331	3.6764185412521	0.409156841936816	0.387254887914755	0.688139428549813
Merged-chr19-45079381-3	chr19	45079287	45079487	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001362398)	TTS (NM_001362398)	3300.0	NM_001362397	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	3.3863388709335	3.45793783074872	3.32781037760494	3.34574038938138	3.59278424662947	3.44056262024105	3.37424811947654	3.59676036764419	0.44092143964816	0.375678308228929	0.678595291948235
Merged-chr6-50560976-2	chr6	50560876	50561076	+	969.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5498.0	NM_007808	13063.0	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	3.49500657794607	3.32046212702028	3.31710619684011	3.51344827023338	3.61726326660353	3.49375257099945	3.42582443476824	3.9145663394207	0.666687549282956	0.192066428841955	0.491589224686858
Merged-chr2-114622726-4	chr2	114622626	114622826	+	796.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025675, intron 3 of 8)	intron (NM_025675, intron 3 of 8)	32238.0	NM_001356438	66632.0	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	3.72764257883503	3.78593784444495	3.94045517458649	3.72929091634191	4.2348999988931	3.90520753469729	4.26108994951278	3.8364181237682	0.789952075215146	0.07298412310322	0.290730433673179
Merged-chr5-120612686-1	chr5	120612586	120612786	+	1000.0	f0_c57.idr	promoter-TSS (NM_028041)	promoter-TSS (NM_028041)	-97.0	NM_133908	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	6.73694961767731	7.09402334148438	6.73813562224727	6.48085112687282	6.87563547828714	7.13541258739459	6.85904769078679	7.27562661202431	0.378885697076705	0.0993779642661858	0.345722474201968
Merged-chr6-51469399-4	chr6	51469319	51469519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016806, intron 1 of 10)	CpG	475.0	NR_104468	53379.0	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	5.57570990562856	6.12335186401511	6.18419433104603	6.01361431355407	6.33360713697105	6.46923515500622	6.03156579559554	6.12047385617832	0.389628670971878	0.133270836700116	0.406571115249216
Merged-chr19-40998687-4	chr19	40998593	40998793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4158.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	6.80012496894853	6.16533380937687	6.62683981172742	6.80943269257824	6.19921607553178	5.74555288097801	6.02096717019273	6.19749190273638	-0.851388560577526	0.00114908502167375	0.0150599747298316
Merged-chr7-90041779-4	chr7	90041680	90041880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110364, intron 5 of 5)	intron (NR_110364, intron 5 of 5)	12621.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	8.34122578643585	8.5000545681095	8.61448380601612	8.02549186062393	8.114245546773	8.45477690198043	7.91324275627969	7.74056377084894	-0.383549546549363	0.0739877030975247	0.293080901484708
Merged-chr15-101976168-4	chr15	101976068	101976268	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21881.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	5.44413511454155	5.97231022228594	6.42975403279554	6.32008157167397	5.67286396572668	5.98497545475287	5.62481417756598	5.44128702152133	-0.655163196475923	0.0367274265053286	0.190824497007298
Merged-chr2-11534981-4	chr2	11534861	11535061	+	877.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	18968.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	4.02046098258364	3.82069017343458	4.20147179777397	4.1914945324465	4.02983834816591	3.93153937004918	4.0040619221467	4.19880299565227	-0.0770865265440679	0.856827841731047	0.946149550026335
Merged-chr7-27436924-2	chr7	27436825	27437025	+	729.5	f0_balb.idr|f1_balb.idr	intron (NM_032610, intron 2 of 35)	intron (NM_032610, intron 2 of 35)	9664.0	NM_032610	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	3.34937375611954	3.27653301792414	2.92530109458314	2.95771601258457	2.49180507267427	2.67500075043108	2.71416909174308	2.92380146942869	-2.1142168181491	0.00381749147197931	0.0386357493934331
Merged-chr10-80659295-2	chr10	80659195	80659395	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2224.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	2.79096850284255	3.24121148283397	2.56355998495347	2.51444728667597	2.90315069062412	3.21729568349514	2.97503853313877	3.10081450240153	1.00990460950842	0.14994655921654	0.432360854406563
Merged-chr13-49306946-4	chr13	49306843	49307043	+	972.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	2265.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	5.04498636885252	4.66621439131238	4.81155482339166	5.08732460647146	4.59350212736558	4.7892907673685	4.71367741754632	4.77108726686067	-0.437289857978811	0.202055217412552	0.504566133212499
Merged-chr7-98779134-4	chr7	98779049	98779249	+	790.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55963.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	3.59282643319244	3.45913547930988	3.35927576204998	3.41646273712598	3.57706831701225	3.9579962590852	3.68039770595573	3.5366564863295	0.755083121566909	0.122648480611273	0.388137835738477
Merged-chr8-86757536-4	chr8	86757425	86757625	+	731.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11519.0	NM_009172	20437.0	Mm.324553	NM_009172	ENSMUSG00000036840	Siah1a	AA982064|AI853500|Sinh1a	siah E3 ubiquitin protein ligase 1A	protein-coding	3.66705230678564	3.79762250390888	3.55227703676655	3.59563370089165	3.91971816719743	3.60679518971572	3.98678900196433	3.9151367414751	0.634222386787307	0.167338844790467	0.458940920611074
Merged-chr5-24597550-4	chr5	24597450	24597650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025891, intron 2 of 12)	intron (NM_025891, intron 2 of 12)	4452.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	5.39479662567634	5.59042258252927	5.12827332017302	5.45856728832327	5.62151562323965	5.47899840628073	5.73107645046881	5.77875399893322	0.420142766166613	0.131988221747355	0.404407457094184
Merged-chr11-115047927-1	chr11	115047827	115048027	+	619.0	f0_balb.idr	intron (NM_199201, intron 1 of 3).2	ID_B1|SINE|B4	368.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	3.01848226918035	2.96385801775457	3.28195358439831	3.04461687387578	2.79409920858051	2.71547434718696	2.82166528275826	3.01727977639803	-1.0648406177697	0.090629133546554	0.32877483801591
Merged-chr7-90482872-4	chr7	90482773	90482973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6878.0	NM_026734	68472.0	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	6.42801471971972	6.45748946251447	6.70517744646859	6.98259545144553	5.42399116069159	5.53188020685708	5.64536147217771	5.95815791118548	-1.5923962805408	3.94310452470759e-09	2.26161351300694e-07
Merged-chr15-75835650-4	chr15	75835563	75835763	+	980.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172121, intron 3 of 11)	intron (NM_172121, intron 3 of 11)	6245.0	NM_172121	223642.0	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	5.47542707730326	5.43425842270501	4.89096059743359	5.31222470438735	5.59088752761146	5.65034604247038	5.62771220906053	5.57850795990671	0.538385557215277	0.0615753706429309	0.262604751767117
Merged-chr17-55752598-4	chr17	55752499	55752699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139138, intron 1 of 16)	intron (NM_139138, intron 1 of 16)	2615.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	6.86957836479033	7.29456487100051	6.90851691901564	6.86156424067482	6.35492436885777	6.41667870173491	6.34378069785167	5.81351398063622	-1.06818540758297	1.23643420068439e-05	0.000333870068173424
Merged-chr5-122049950-2	chr5	122049850	122050050	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001312908)	promoter-TSS (NM_001312908)	-99.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	3.29801006184674	3.29212329523407	3.92411702149334	3.62815274000059	3.10045314644902	3.34959147137539	3.01698478175843	3.62345765074583	-0.9248713150727	0.127940732969321	0.398030688298095
Merged-chr11-44410686-4	chr11	44410584	44410784	+	747.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303244, intron 5 of 7)	intron (NM_001303244, intron 5 of 7)	10621.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	3.34509231222393	3.84829631366604	4.05777324421397	3.71348828198897	4.27793688311564	3.98247863147233	4.35899807095644	4.1003444622371	1.14758073983235	0.0164839598180569	0.112192749654759
Merged-chr19-53312012-5	chr19	53311933	53312133	+	914.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	588.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	4.05110493584649	4.1400525164895	4.19506411891832	4.07416921808188	3.9718504554005	4.22641762670732	4.30401007430877	4.43795982846989	0.315210922714193	0.439153272491942	0.727093828538622
Merged-chr11-97826682-4	chr11	97826611	97826811	+	968.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010688, intron 4 of 6)	intron (NM_010688, intron 4 of 6)	-14069.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	5.15383866164475	5.07738689647416	5.15472101046902	5.15096239607429	5.00803827431943	5.16574991371254	4.47095148746828	4.95357777529111	-0.40674696822723	0.222960875306054	0.531069778572449
Merged-chr7-126399688-4	chr7	126399581	126399781	+	634.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2944.0	NM_010900	18020.0	Mm.1389	NM_010900	ENSMUSG00000030722	Nfatc2ip	D7Ertd304e|NIP45	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2 interacting protein	protein-coding	3.53582238857824	3.35860161164791	3.53630108484997	3.33667079736629	4.04337655520956	3.59573319391152	3.40725337695826	3.7401193056581	0.922006809925896	0.0698594822076123	0.282883609287498
Merged-chr14-62120480-3	chr14	62120381	62120581	+	853.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	172498.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	4.23202476697926	3.48357921484335	3.98104117827488	4.4307278729228	3.29015718299798	3.95706902547557	3.59419809061306	3.77849820615314	-1.16407601789779	0.0374359682651873	0.193160912297772
Merged-chr17-28511227-4	chr17	28511097	28511297	+	852.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19664.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	3.91853112870132	4.01553798928126	3.66375078134585	3.12314923907377	3.94497649691005	3.89404098220992	3.85478084560215	3.60419707871517	0.313329669016783	0.566377808825728	0.807861795964639
Merged-chr9-44235012-4	chr9	44234900	44235100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007619)	promoter-TSS (NM_007619)	-954.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	6.52048240527303	6.73390382663409	6.12515900677301	6.21007060817804	6.62546779279613	6.57913807999121	6.23944801728214	6.66921450784901	0.184379273088253	0.457180532740153	0.74037387982416
Merged-chr12-84178260-2	chr12	84178160	84178360	+	829.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	15755.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	3.26373154002493	3.04538261120967	3.09385835516426	3.13361207205351	3.15673910286825	3.07452308010739	2.95743326616186	3.31427587314555	-0.00706961732300216	0.99002011024796	0.99607374589458
Merged-chr2-167492413-4	chr2	167492316	167492516	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030743)	promoter-TSS (NM_030743)	-229.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	4.58115244054098	4.92135378367298	4.62442672536982	4.45273227269877	4.97914335387954	5.02560052985502	4.47249007839357	4.98320956240206	0.491452394660592	0.17610974189303	0.471075359571741
Merged-chr2-167701650-4	chr2	167701552	167701752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10475.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	5.82215278139001	5.68868267852118	5.65453139004979	5.73414120705764	5.50009566136241	5.4457773383869	5.60012484452048	5.90604958707835	-0.174505117741722	0.51472066612184	0.777218487746588
Merged-chr14-77526496-3	chr14	77526404	77526604	+	727.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253759, intron 7 of 19)	Lx6|LINE|L1	-19636.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	3.58810530666896	3.56962184365057	3.64880877906904	3.45016134158362	3.961763735376	3.88419177624561	4.03292148387034	4.38758635516552	1.50812817363325	0.000918531210859279	0.0125813254931212
Merged-chr6-122600933-4	chr6	122600811	122601011	+	970.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134391, intron 1 of 7)	intron (NM_001134391, intron 1 of 7)	1533.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	4.57864052148289	4.22626362782148	4.21441096666135	4.23879818282254	4.57712396743282	4.67207845859866	4.67077133576164	5.06419805493908	0.976791093758704	0.00919498667521326	0.0743147446979681
Merged-chr17-3149661-4	chr17	3149580	3149780	+	836.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134123, intron 3 of 19)	MTC|LTR|ERVL-MaLR	34708.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	3.30912738349265	3.82780613086874	3.61971799415649	3.8255689670255	3.46939942229979	3.68016384200145	3.94004306561096	3.82179482014685	0.194456624034366	0.706101741522569	0.881879743016467
Merged-chr10-6717749-4	chr10	6717675	6717875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-40818.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	6.73125718121995	7.02640160969388	7.10667970573896	7.33501650628543	7.12049871451332	6.9102985857174	7.08239213648957	6.95479292660389	-0.081262039463475	0.702901769675532	0.880439324670656
Merged-chr19-4476988-2	chr19	4476888	4477088	+	694.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134164, exon 1 of 8)	5' UTR (NM_134164, exon 1 of 8)	155.0	NM_134164	171180.0	Mm.262270	NM_134164	ENSMUSG00000049303	Syt12	-	synaptotagmin XII	protein-coding	2.41275406025108	2.3185313428321	2.35061340747846	1.90040007499166	2.0913716312527	2.08747055604681	2.13699658523065	2.41166884214173	-0.452329683936341	0.595362702516241	0.823889334925232
Merged-chr9-22226554-4	chr9	22226479	22226679	+	846.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028420, intron 1 of 4)	B2_Mm2|SINE|B2	867.0	NM_001164624	235047.0	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	3.45782032786596	3.5874430295849	3.96782422150723	3.02355915570411	3.6958199111561	3.75386270088887	3.61798730343417	3.92246047095269	0.618452390489231	0.26902542793137	0.580605831682696
Merged-chr7-16951469-4	chr7	16951371	16951571	+	971.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6789.0	NM_001099636	434128.0	Mm.483018	NM_001099636	ENSMUSG00000070802	Pnmal2	EG434128	PNMA-like 2	protein-coding	5.19991830477256	5.2101650555857	4.86230273715691	5.26980370534764	4.93767091187355	5.07582705415113	5.01836034808122	4.81982555369386	-0.370853409038237	0.24166974663051	0.5521718902004
Merged-chr5-117363273-4	chr5	117363155	117363355	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021539, intron 1 of 8)	intron (NM_021539, intron 1 of 8)	5950.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	5.02217826358489	4.76609085664152	4.73620554004467	5.39270876369463	4.91348786702449	4.60236595013151	4.79148268167695	4.84824095305169	-0.459899472851998	0.207231604399265	0.511181071672855
Merged-chr9-88404324-4	chr9	88404205	88404405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172926, exon 12 of 28)	exon (NM_172926, exon 12 of 28)	34646.0	NM_001359958	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	7.24558083092572	7.24386043023055	7.49467165452744	7.54728136847057	7.27935825719953	7.08807670716955	7.55233791873257	7.2307862090368	-0.130463331288007	0.510708944972943	0.774914778428754
Merged-chr1-155087118-3	chr1	155087025	155087225	+	961.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3861.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	4.55684869943246	4.39123668843416	4.21944871862009	4.51506606557789	4.18209374886184	4.01608471180027	4.37966717568487	4.66099616403972	-0.238943066644639	0.558279891416058	0.8030434967081
Merged-chr11-100378663-4	chr11	100378562	100378762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010593, intron 7 of 13)	intron (NM_010593, intron 7 of 13)	19128.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	5.67045477082505	5.63085620860505	5.72287193872139	5.94846088476436	5.80564114129713	5.5573158412437	6.04138111222475	5.79218125071149	0.0794410596783175	0.766428887523433	0.908638755872086
Merged-chr10-87858214-4	chr10	87858133	87858333	+	877.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010512)	promoter-TSS (NM_010512)	-32.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	3.86634251807496	4.1873561461486	4.29826132982218	4.15911192975866	4.19525383032925	4.29518429867166	4.05927392867798	4.02484253652693	0.024295818345533	0.953235535529296	0.983345411862723
Merged-chr8-115522704-4	chr8	115522606	115522806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	184188.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	6.32798547987069	6.69535845683427	6.06070651003287	6.37680971094872	6.32315639678982	6.30578702183712	6.64926214582539	6.51407509704374	0.0937933671207719	0.698557835335115	0.87844064975986
Merged-chr14-55557242-4	chr14	55557197	55557397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2732.0	NR_037572	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	7.18868055685382	6.80443069460103	6.88948936756895	6.97860573952901	6.4683033331406	6.67146924273185	6.61109735840442	6.76118210762297	-0.490644300549193	0.0186324780236678	0.122115537155313
Merged-chr7-90150516-4	chr7	90150423	90150623	+	855.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	20310.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	3.75529429445048	4.15059720345319	3.57178753995025	4.08474507001683	4.05191927739997	4.09009922178202	4.28691638997579	3.75379968694291	0.36393624949413	0.448274318993632	0.73357820837888
Merged-chr16-21719893-4	chr16	21719815	21720015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25250.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	5.38795258321524	5.33842266233131	5.0982153367461	5.37339813489857	5.35913795462849	5.53357339234404	5.57255716879592	5.35594422258416	0.252169918160115	0.372565383655888	0.676362768905388
Merged-chr13-24713746-4	chr13	24713648	24713848	+	835.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029679, exon 17 of 23)	exon (NM_029679, exon 17 of 23)	48189.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	4.48812744933955	4.5147384801585	4.18892447097823	4.27974058374079	4.20440799854192	4.265376265224	4.38986360923848	4.18643342851477	-0.263799164835339	0.498121024457431	0.767507065543672
Merged-chr2-19415211-4	chr2	19415106	19415306	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30457.0	NM_018809	19213.0	Mm.69647	NM_018809	ENSMUSG00000026735	Ptf1a	PTF1-p48|PTF1p48|bHLHa29	pancreas specific transcription factor, 1a	protein-coding	4.99931191360724	5.18788323619555	5.10875714336219	5.24258056556699	4.9302219382671	5.38443423039868	5.27535480813295	5.90166519043351	0.488858768286492	0.154649759407542	0.439914960084947
Merged-chr4-56133423-3	chr4	56133293	56133493	+	699.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-600918.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	3.51844272501099	3.78681298765746	3.9584863737913	3.49604342198234	3.49293282117913	3.30470205675912	3.61576557527154	3.82583695280269	-0.391397077944795	0.452570325253646	0.736907471273024
Merged-chr15-50841889-3	chr15	50841801	50842001	+	881.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 2 of 5)	intron (NM_001310481, intron 2 of 5)	47148.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	3.76880675307953	3.5809739567226	3.71770317275257	3.78525367990881	4.17343297702607	3.60332627572256	3.70284161710653	3.66192880065657	0.302932950105257	0.534631496639739	0.789286995820758
Merged-chr6-108759565-4	chr6	108759466	108759666	+	939.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23493.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	4.6458285067925	4.93013982772495	4.46217542023971	5.11742608036405	4.99008088022864	4.82434988291209	5.37501840812941	4.64359994686017	0.312824709812453	0.417330222082582	0.711136307000087
Merged-chr9-13563679-4	chr9	13563574	13563774	+	932.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56315.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	4.93224945296136	5.17356196813126	4.65405627315913	3.9775454045208	4.60838229518737	4.90336913274514	4.46714907120743	4.01356649678627	-0.474584412900123	0.326646706434523	0.638168306680837
Merged-chr8-72183998-4	chr8	72183908	72184108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5660.0	NM_197944	209488.0	Mm.157431	NM_197944	ENSMUSG00000062007	Hsh2d	ALX|Hsh2	hematopoietic SH2 domain containing	protein-coding	6.9128691852934	6.67929555455315	6.78549047804962	6.95814413967194	6.33375122639809	6.1344697583124	6.42970445553842	6.49270392473914	-0.707959019738708	0.00103731775010391	0.0138518099717532
Merged-chr18-39085919-3	chr18	39085771	39085971	+	795.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 1 of 21)	intron (NM_001361073, intron 1 of 21)	92726.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	2.85213311009453	2.94061762349494	3.07003891810656	3.1212868419396	2.37629847237541	2.45815411957334	2.43307141425721	2.72671343510087	-3.02208575183514	0.00039543345961436	0.00638678425729307
Merged-chr16-94258933-4	chr16	94258832	94259032	+	669.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	31359.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	3.82089375825742	3.76311416232265	3.71618043498674	3.75039263103823	4.02853316273429	3.65683754995192	3.901779329272	3.96223260959426	0.402553063354328	0.36575005023657	0.670406513516905
Merged-chr11-72547393-4	chr11	72547295	72547495	+	966.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029932, intron 1 of 11)	intron (NM_029932, intron 1 of 11)	2851.0	NM_029932	77577.0	Mm.46185	NM_029932	ENSMUSG00000020798	Spns3	9830002I17Rik	spinster homolog 3	protein-coding	5.20941939566702	5.3812460115308	4.77807837319578	4.23472945695076	4.86495913093217	5.06671875873597	4.90324953305983	4.69342969458626	-0.16105911643566	0.697902864058228	0.878043796632193
Merged-chr5-88601432-4	chr5	88601329	88601529	+	950.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289777, intron 3 of 14)	Tigger7|DNA|TcMar-Tigger	17916.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	4.69811545315909	4.45781106542398	4.40824144542243	4.68482220996594	5.03113189937632	4.28119845551063	5.02692739031062	4.25825427075183	0.304694687286324	0.467481277107455	0.747012132863453
Merged-chr15-80445086-3	chr15	80445008	80445208	+	976.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6505.0	NR_155274	102633578.0	Mm.397484	NR_155274	ENSMUSG00000115888	Gm31369	-	predicted gene, 31369	ncRNA	4.10837876324761	3.77539587923261	3.85757961050923	3.53314275240118	5.13834919685158	5.34421206139827	5.00938118642113	5.0324091830352	3.10573758372816	9.54101018706636e-16	1.72365371600304e-13
Merged-chr14-21987895-4	chr14	21987804	21988004	+	632.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145459, exon 2 of 3)	5' UTR (NM_145459, exon 2 of 3)	1697.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	3.52242033081472	3.46731922920755	3.36666513529446	3.27453436233098	3.39006745780429	3.09207832820013	3.45846806376041	3.12227978794663	-0.446598654467559	0.417231601543768	0.711042884724397
Merged-chr18-34507412-4	chr18	34507314	34507514	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146084)	promoter-TSS (NM_146084)	-591.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	5.03495974743239	4.85776124810114	5.06546885797481	5.021927835421	4.36621086072061	4.35520348905285	4.50462960245093	4.64987384492798	-1.13292099142905	0.0011905899666995	0.0154728872082716
Merged-chr10-39774670-4	chr10	39774568	39774768	+	958.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011264, intron 1 of 31)	intron (NM_011264, intron 1 of 31)	42508.0	NM_011264	19714.0	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	4.10099294739942	4.28609756775412	4.55522136975262	4.57749767930438	4.42017066847676	4.11370903788881	4.6423707769853	4.69623193648768	0.189743325428032	0.642944231264552	0.849459897971419
Merged-chr1-165672693-4	chr1	165672586	165672786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	MLTR11B|LTR|ERVK	35408.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	7.142644285506	7.37921145059118	7.90797446585387	7.67283081505864	7.13369510878828	7.36985101197803	7.73700728744531	7.43214926796526	-0.169972842409943	0.464010059807449	0.74519118175878
Merged-chr8-35625874-4	chr8	35625797	35625997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-36877.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	5.82293595125757	6.00677763007116	5.96855551439157	6.18524052797503	6.39533358872726	5.95030262064659	6.40526774735466	5.98686466746198	0.301972219513199	0.238993386532298	0.549496422894969
Merged-chr7-29306804-3	chr7	29306726	29306926	+	855.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013874, intron 1 of 11)	intron (NM_013874, intron 1 of 11)	2821.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	3.16629137692922	3.21276048422558	3.33656209042376	3.42590697342208	3.12941597848212	3.39465230185114	3.03041685142719	3.10327086187969	-0.485208430516703	0.387501584464448	0.688361957637947
Merged-chr8-68999506-4	chr8	68999421	68999621	+	847.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-89215.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	4.39359596846896	4.80314821023697	3.94011005326724	3.82218823295929	4.77425766416118	4.38899626832248	4.2866198412075	4.43339041616871	0.436446662745075	0.353347484121146	0.660181131644461
Merged-chr12-108906985-3	chr12	108906878	108907078	+	938.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	12706.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	4.21004862922031	4.60080597913226	4.21068109147718	4.60103688250951	3.91037909521532	4.07717095640409	4.32393649529383	4.25394644172133	-0.709336381524241	0.0914276677638424	0.330444093656869
Merged-chr3-38105687-4	chr3	38105592	38105792	+	901.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102427.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	4.46430077592495	4.85864230179963	4.97054028949684	4.86231312973227	4.79761414588512	4.81766013090928	4.88093662943373	4.63970132835597	-0.0426504100763797	0.90121288765386	0.963342914941175
Merged-chr6-37419305-4	chr6	37419208	37419408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	22840.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	5.99361657049544	5.82809035468894	6.33427771716256	6.0108675651368	5.66455495567156	5.95996516257959	6.00640615029418	6.07416508439395	-0.195015846753479	0.45364305946327	0.73762335852288
Merged-chr1-144312778-4	chr1	144312696	144312896	+	902.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-63692.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	4.76447769316881	4.95055191643678	4.87678754027372	5.1299820407406	4.83470957403028	4.77682981992941	4.85353646007626	4.72274484937376	-0.313161304843984	0.343908552060153	0.652496716789894
Merged-chr11-117970054-4	chr11	117969950	117970150	+	914.7374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007707)	promoter-TSS (NM_007707)	-684.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	4.328893278751	4.54553978862534	4.07348776306443	4.31159402224957	4.80111214860009	4.67532810165983	4.48280742947986	4.54070259759877	0.696653431103873	0.0642274244588177	0.269348014231673
Merged-chr3-108855567-4	chr3	108855429	108855629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177091, exon 13 of 13)	3' UTR (NM_177091, exon 13 of 13)	-15027.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	7.52691457151076	7.28800553000322	7.35799830539614	7.34016511479174	7.90982459405399	7.98176778490053	8.05870297864534	7.98032033860931	0.793276180750273	1.73182518855022e-06	5.75219715799423e-05
Merged-chr1-16519877-4	chr1	16519752	16519952	+	921.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025303)	promoter-TSS (NM_025303)	-550.0	NM_001347045	29819.0	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen double-stranded RNA binding protein 2	protein-coding	4.619465562689	4.63332657857624	4.85645587055389	4.70875017792738	4.23639781066889	4.30898615929679	4.16399463759273	4.22992717733504	-1.1036322091283	0.00322409507668872	0.0337581440811454
Merged-chr17-87530646-4	chr17	87530659	87530859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83824.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	3.84403247852881	4.16150871582844	4.01809813060196	3.39567232707912	4.82051411769972	4.68309811331962	4.52574833067911	4.26288680979249	1.78651150908986	9.39534640325392e-05	0.00192668211361916
Merged-chr17-47009112-3	chr17	47008985	47009185	+	769.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146078, intron 1 of 46)	intron (NM_146078, intron 1 of 46)	1447.0	NM_146078	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	3.66807437488752	3.38390794790913	3.18337746146089	2.91825608936312	3.39042984803923	3.59290730253659	3.23529108257775	3.30611289021447	0.264583914905497	0.651967121591241	0.854314575621188
Merged-chr16-23135978-4	chr16	23135870	23136070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-8240.0	NM_145480	106344.0	Mm.386835	NM_145480	ENSMUSG00000022881	Rfc4	A1|AI894123|AU040575|RFC37	replication factor C (activator 1) 4	protein-coding	5.07294393684789	5.17921769844439	5.14126400084441	4.74633847359491	5.39535771968412	5.24935101527458	5.45652427906289	5.20174797729051	0.573253756184991	0.0638378178616517	0.268345571579938
Merged-chr2-102894863-4	chr2	102894791	102894991	+	831.4345089999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	6774.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.50226960379835	3.49636533004674	3.50278091825658	3.40643699886805	3.00297774643371	3.56634655118332	3.07020404267203	3.44803496555398	-0.670290430914445	0.237621346954986	0.547779380627817
Merged-chr1-134785100-4	chr1	134784984	134785184	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081307, intron 18 of 23)	intron (NM_001081307, intron 18 of 23)	18637.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	5.31314220924151	5.64769314605096	5.59746832434441	5.78810292597705	5.20177261675422	5.69262081308546	5.37897751831011	5.21157486919272	-0.407256060858848	0.171979483850817	0.465252629537357
Merged-chr13-112507017-4	chr13	112506926	112507126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010560)	TTS (NM_010560)	42956.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	6.52498314660885	5.71627007209426	6.7109245173896	6.76443640915021	5.78493578351708	6.2024614623793	6.20193911241547	6.04243572999532	-0.653264315221344	0.0291298511780469	0.164089401472159
Merged-chr10-96623403-4	chr10	96623316	96623516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007569)	TTS (NM_007569)	6415.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	5.19952628849959	5.41433700631286	5.20040502989205	5.18896645836231	5.5545938637765	5.12831999923507	5.53805774208942	5.19685093960146	0.230366058236298	0.440455841706866	0.727879048032435
Merged-chr15-27923825-4	chr15	27923733	27923933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	102015.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	6.61149363501213	6.97923176193987	6.27585566250051	6.56390435969583	6.58832381085824	6.60588790330952	6.84305939152713	6.29150037392474	-0.0533378440807098	0.82894548722198	0.934333879868872
Merged-chr9-14846891-4	chr9	14846765	14846965	+	935.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13345.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	4.25243413194633	4.22156913673107	4.72771501354487	4.5691076518755	4.60849457748193	4.86233191428729	4.80784386647607	4.6879823268494	0.594858005044081	0.109965543282638	0.366215108014911
Merged-chr17-49423057-4	chr17	49422954	49423154	+	970.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5310.0	NM_028464	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	5.91550980645221	6.16802602913244	5.99961612252365	5.95463449212605	5.7698058778687	5.57185253512861	5.23007389656005	5.25209810689703	-0.861344785750268	0.00239463696818891	0.0268295080684273
Merged-chr17-31122049-2	chr17	31121949	31122149	+	900.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7562.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	3.14817530028853	3.1732525006574	3.09009381955951	2.60642482714862	2.92928058414512	3.20320404563477	3.13590445579477	3.08843029056459	0.2896051757761	0.647566108569464	0.851667779256884
Merged-chr7-122670992-4	chr7	122670882	122671082	+	927.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019430)	promoter-TSS (NM_019430)	-762.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	4.40241492162876	4.65935880971526	4.40307387589702	4.58973303581331	4.96950592077572	4.62767690044465	5.037973939268	4.73622190090557	0.700757670542336	0.0470324147659428	0.22307724732625
Merged-chr10-80446431-4	chr10	80446344	80446544	+	857.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12791.0	NM_001164148	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	4.67661062351954	4.62915227282704	4.25404296297928	3.93027266927986	4.1021504361777	4.38283115881347	3.93140528703354	4.25137921449029	-0.545936779981955	0.227966891261805	0.536731124408706
Merged-chr1-82831996-3	chr1	82831901	82832101	+	902.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7459.0	NM_010472	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	3.78355831319601	3.75985001088957	3.7841127559387	3.58706146942582	3.8602942664849	3.74595113027107	3.55918071831966	3.51196299602791	-0.116492227475487	0.807017685541849	0.925584696333982
Merged-chr5-144770648-5	chr5	144770514	144770714	+	780.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081362, intron 1 of 70)	ID_B1|SINE|B4	1822.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	3.25510492779402	3.12721702847619	3.090155329547	2.76794698947496	3.15771294399274	3.07647927417833	3.07844562762329	2.82971345313045	-0.0817045132922738	0.894366302129663	0.960505846004221
Merged-chr10-37195205-4	chr10	37195111	37195311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56285.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	7.82457123365058	7.92789842948659	8.16956003194663	8.11204307260523	7.67883706808887	7.61427498440971	7.84726280555251	7.74210640823842	-0.385020524160152	0.0257718336021135	0.151554307994451
Merged-chr13-21531024-4	chr13	21530825	21531025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001251834, intron 1 of 1)	CpG	189.0	NM_139141	93681.0	Mm.290601	NM_139141	ENSMUSG00000063894	Zkscan8	2510038J07Rik|D430019P06Rik|LD5-1|Zfp192	zinc finger with KRAB and SCAN domains 8	protein-coding	5.87403551943201	5.74434116213651	6.81941739657852	5.96365722621057	5.61673698237098	5.84782113524839	5.82100380178992	6.06928852149314	-0.511564904524423	0.113829184253991	0.373103335015803
Merged-chr16-33744862-3	chr16	33744759	33744959	+	947.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 10 of 14)	intron (NM_175256, intron 10 of 14)	-49178.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	3.39986814003438	3.66943161768658	3.46159619725553	3.80270412601338	3.61106600163609	3.51395315334952	3.80797800343221	3.72906188553545	0.188653977456644	0.706133186381946	0.881879743016467
Merged-chr5-123013768-4	chr5	123013670	123013870	+	845.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1304.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	4.3560225610771	4.29774003339575	3.83820754832492	3.66082123860503	4.0064826042721	4.17697973647558	4.17228562124365	4.27394119797833	0.247581985268132	0.591276037794711	0.821525680896513
Merged-chr18-77773618-4	chr18	77773520	77773720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007505)	promoter-TSS (NM_007505)	1.0	NM_001357533	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	5.43779533852913	5.70521994110385	5.65106521219677	5.34764964481734	5.10033094819407	5.52518128717074	5.41153499576637	5.71817669763586	-0.153711388855041	0.610295942182766	0.831595076242652
Merged-chr2-26657465-3	chr2	26657360	26657560	+	889.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13822.0	NM_010695	16821.0	Mm.123925	NM_010695	ENSMUSG00000026919	Lcn4	A630045M08Rik|Vnsp2	lipocalin 4	protein-coding	3.59131760601863	3.26165327012138	3.64157273572794	3.78461885831675	3.4426088099525	3.48419632382238	3.41706706852099	3.36920782844044	-0.546807471122025	0.294928460704788	0.607045321864955
Merged-chr12-102320103-4	chr12	102319973	102320173	+	773.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 2 of 9)	ORR1E|LTR|ERVL-MaLR	36432.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	4.03403078545362	3.73833039737182	4.51552768637097	4.23816469930723	4.20120842778663	3.94486452838183	3.86408963188402	4.03222305287719	-0.362214984768418	0.434525310514639	0.7238182012175
Merged-chr18-9538794-4	chr18	9538708	9538908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80661.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	5.34531926142464	5.32197669850478	5.75994591601776	6.32137610172902	5.32093876870561	5.45959008856344	5.79873580117121	5.68322881768487	-0.333128938755108	0.33978171163771	0.648910202172636
Merged-chr7-45923628-4	chr7	45923526	45923726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2200.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	7.95518387328739	8.34568649512124	8.15456015189232	8.05457491304517	8.19240525125611	8.19659456612034	8.18706807161635	8.01380398278021	0.0198220973998732	0.905790712257593	0.965009910161249
Merged-chr8-3221177-4	chr8	3221088	3221288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330056, intron 2 of 21)	CpG	58429.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	6.7020969150856	6.28076257796552	7.01012962449678	6.86262118283986	6.89183419088641	6.78641136325368	6.98642548244	6.75752345533347	0.16424935635095	0.476834169998641	0.753197358890712
Merged-chr9-106411370-3	chr9	106411285	106411485	+	836.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18026.0	NM_001324533	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	3.45571752361087	3.23169115084964	3.28647348236761	3.60387943467335	3.39439808047641	3.57088908481764	3.44229871446823	3.09035319594622	-0.0933997518158034	0.865454287720186	0.949654232373977
Merged-chr16-65469900-2	chr16	65469820	65470020	+	748.833374	f0_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-50709.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	3.37691155466547	3.20183773933597	3.57652035126918	3.24725148059478	3.22889072184836	2.96489157007315	2.99732799325766	3.61931218791665	-0.448806868684442	0.458853520524773	0.741615730170609
Merged-chr6-38951077-4	chr6	38950976	38951176	+	871.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 2 of 12)	intron (NM_011539, intron 2 of 12)	32090.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	3.91969616411879	4.93040270435498	4.45351178432528	4.49932870916648	4.32009403649589	4.3171906942824	4.0713782255849	4.03223927400157	-0.73055680055158	0.107394803024715	0.361447571256144
Merged-chr15-96642605-7	chr15	96642574	96642774	+	956.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134086)	promoter-TSS (NM_134086)	239.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	5.60233130911081	6.02200567761338	5.90615594046997	5.87399551959272	5.88429299482373	5.83584192904206	5.89819512454103	5.94603133222147	0.0439994928727561	0.859681968740193	0.946955274036401
Merged-chr7-100198837-1	chr7	100198737	100198937	+	687.400024	f0_balb.idr	Intergenic	Lx6|LINE|L1	20154.0	NM_001190871	57442.0	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	3.57661823414077	3.29429354719768	3.34616200477079	3.24129864554615	2.61440028091763	2.97114569316489	2.98872246810174	2.70477500749906	-2.56107499320588	0.000346902271526584	0.00570389392122678
Merged-chr5-28071964-4	chr5	28071872	28072072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153526, intron 1 of 4)	intron (NM_153526, intron 1 of 4)	560.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	8.29110923381001	8.77467655624447	8.75340067818158	8.62187782982942	8.67934799825131	8.79727834437132	8.72591196217997	8.60929261774399	0.0980695952876577	0.556877915872272	0.802235069284239
Merged-chr11-50325745-4	chr11	50325629	50325829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007597)	promoter-TSS (NM_007597)	-56.0	NM_001110500	12330.0	Mm.248827	NM_007597	ENSMUSG00000020368	Canx	1110069N15Rik|AI988026|Cnx|D11Ertd153e	calnexin	protein-coding	8.56533891872765	8.77438579229336	8.31718297086307	8.14335998663523	8.76427653166867	8.94471519013747	8.65245262808114	8.49345120216063	0.32063140763706	0.0993483931701236	0.345711037763688
Merged-chr15-58976644-4	chr15	58976540	58976740	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	42830.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	4.98743792777157	5.05816228141941	4.67581556514363	4.99976923238453	4.29934239476853	4.44609419623247	4.72956023579953	4.41238646599185	-1.01182746058707	0.0052111987838228	0.0489867826510464
Merged-chr2-156324876-3	chr2	156324778	156324978	+	869.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027585, intron 2 of 12)	RMER21B|LTR|ERV1	-12174.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	3.15718895179935	2.99838976198763	3.36386494610961	2.96350460739863	3.72019938713747	3.92320577031742	3.9503240048821	3.9266438721897	2.62483555830671	5.4202073928375e-07	1.99795412747168e-05
Merged-chr9-90260317-1	chr9	90260217	90260417	+	668.0	f0_balb.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	10452.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	3.36393158263905	3.38146669901737	3.30838655549349	3.59293035796006	3.33063782359053	3.09286703903306	3.29625876156154	3.30669044076502	-0.58868102299838	0.276859843792387	0.588889756792323
Merged-chr1-40295036-4	chr1	40294937	40295137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123382, intron 5 of 10)	intron (NM_001123382, intron 5 of 10)	28451.0	NM_001123382	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	7.48223844564066	7.41093519366373	7.41557988118942	7.59742696738976	7.62046312463965	7.8608867946671	7.57187999339867	7.35958970632868	0.171291411695062	0.357509317077902	0.663619560848277
Merged-chr19-7206257-5	chr19	7206084	7206284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134150)	promoter-TSS (NM_134150)	100.0	NM_134150	107260.0	Mm.203921	NM_134150	ENSMUSG00000024767	Otub1	AI850305	OTU domain, ubiquitin aldehyde binding 1	protein-coding	5.99654790344758	6.63891727941104	6.08713885000111	5.7057081677297	6.25217119744765	6.49850796130713	6.17872190051434	6.5015971170181	0.326704970911377	0.251416650815621	0.562842767366097
Merged-chr11-98938236-4	chr11	98938119	98938319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 1 of 8)	intron (NM_009024, intron 1 of 8)	501.0	NM_001177302	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	4.57308562473821	4.62495215239243	4.45352252291434	4.08699332867787	4.47794834246996	4.54080899174023	4.43319063713391	4.45067987187464	0.0952516394399546	0.806999026060963	0.925584696333982
Merged-chr4-132969537-4	chr4	132969472	132969672	+	881.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-4523.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	4.39680487531403	4.32584649177219	4.06663938330517	3.77799061796705	3.92445904805946	3.86833538415648	3.90049172029786	4.11050584475424	-0.531149451543023	0.246608258368007	0.557837855749496
Merged-chr1-43500304-4	chr1	43500214	43500414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	54563.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	5.2924950001601	5.14182052946687	5.50824672254463	5.53779451203241	6.08083463118668	5.56734417976164	5.56203055864156	5.95129343313596	0.726562246240283	0.0137416351059831	0.0986849585840947
Merged-chr17-71483959-3	chr17	71483858	71484058	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-8615.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	4.23850411085318	4.04521692063722	4.37539091786779	3.1637758871503	7.23695157176433	7.2291940801181	7.35260991413733	6.9116868130971	6.44663043104694	3.72219209098528e-66	1.32470955422121e-61
Merged-chr19-34402922-2	chr19	34402829	34403029	+	785.75	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	72206.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	3.54524666226326	4.0741134626507	3.66219974017005	4.51834051344484	3.66104444994504	3.39322007213702	3.59156520239314	3.54389322570677	-1.3912805640674	0.0133000561885719	0.0965512187094708
Merged-chr4-53155687-4	chr4	53155580	53155780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	4215.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	8.68138375452673	8.7248253263584	9.29065159069716	8.99961024882814	8.7041352582762	8.82902673165212	8.91375639153582	8.52094865435738	-0.24750465468758	0.190645252488605	0.489995610128056
Merged-chr17-25681827-4	chr17	25681686	25681886	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35386.0	NM_022422	64337.0	Mm.171123	NM_022422	ENSMUSG00000025739	Gng13	1500031D04Rik|AB030194|Ggamma13	guanine nucleotide binding protein (G protein), gamma 13	protein-coding	4.7544929386645	4.50952293820218	4.44687090108561	4.96253292080628	4.64476380896764	4.16913476026465	4.79805047912172	3.85107261331926	-0.586360629182925	0.204301941888985	0.507485881057967
Merged-chr6-32528266-4	chr6	32528172	32528372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	17131.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	7.16613553776988	7.2341462838433	7.06296686663069	7.18238696796047	6.94870039001194	7.07218682291872	7.14246428310469	6.89004500990462	-0.208224469860181	0.264520955847487	0.576548278049676
Merged-chr12-80057681-4	chr12	80057591	80057791	+	987.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55322.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	5.05403433772387	5.18623267610147	4.82666485858524	4.57742748175616	5.57690515524722	5.42213986974363	5.41503909352682	5.08582053788035	0.892582291520581	0.00709841406171852	0.0615193004382154
Merged-chr19-3388806-4	chr19	3388726	3388926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039658)	promoter-TSS (NM_001039658)	-31.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	7.54750818703267	7.71096574828267	7.50310342802879	7.17678845996453	7.62124054269509	7.73487956058566	7.58120629142468	7.46970479864306	0.153831314770391	0.429993989679431	0.720730518329775
Merged-chr1-173740321-2	chr1	173740220	173740420	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204910, intron 1 of 7)	B1_Mus1|SINE|Alu	1489.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	3.48196246978163	3.48631922055744	3.24415045397942	2.96424250123516	3.35546176160959	3.75663001309843	3.5714193955955	3.48044962404754	0.831736102347923	0.131791907914048	0.404206145010944
Merged-chr6-38610351-3	chr6	38610253	38610453	+	867.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_138680)	TTS (NM_138680)	26886.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	3.53979582503684	3.20160034429314	3.64655851448209	4.12604348260596	3.55023078900625	3.47669096380521	3.63142581793007	3.42280072287492	-0.514969387995541	0.366505621874208	0.670905865121496
Merged-chr15-60855281-3	chr15	60855184	60855384	+	803.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30204.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	3.86785235568661	3.7250693445652	3.8147134524398	4.28804817913551	3.93359793444783	4.18689679607779	4.08923220107485	3.86621549545708	0.154779485937618	0.741205084161932	0.898139463026673
Merged-chr17-7398465-4	chr17	7398393	7398593	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13188.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	5.02714584324248	5.12060091394552	5.64410950720255	5.2124079897513	6.23307895051322	6.27446034189352	6.30900032853078	6.38378872976871	1.67558659771554	3.08608755166473e-10	2.19664625839944e-08
Merged-chr2-169918620-3	chr2	169918500	169918700	+	954.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	44587.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	3.00869353397108	2.92063662620114	3.00901510291615	2.37765920265289	4.62066882419614	4.04737001139357	4.36471442721754	4.16959740844244	8.19372855322054	2.04476622014914e-17	4.85148049279986e-15
Merged-chr1-144320214-4	chr1	144320125	144320325	+	956.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71121.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	4.50051304904118	4.10815962865686	4.2788304371634	5.08344607535613	4.63555963200476	3.9467621862616	4.52016720295137	4.6518428206768	-0.207846004620337	0.664907423463231	0.861125281926661
Merged-chr6-51520871-4	chr6	51520758	51520958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-3045.0	NM_001361582	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	6.13323533547453	6.31609757910823	6.44645337349303	5.40068625404415	5.95772630836227	6.00102636047682	5.95759457662722	5.9839984818907	-0.225663907081033	0.461867244421345	0.743501704400988
Merged-chr4-133911086-4	chr4	133910978	133911178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-23281.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	8.05598445687289	8.16895173560007	7.88509354667934	7.84803440842091	8.37324150160166	8.62381734925391	8.5367083571412	8.24983134271139	0.585912661121706	0.000691180931475722	0.0100300851216127
Merged-chr7-96406756-4	chr7	96406649	96406849	+	853.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 2 of 32)	intron (NM_011858, intron 2 of 32)	-64785.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	4.78598675675191	4.78545149819161	4.46031890057922	5.25765170182788	4.32411001638561	4.63855304528952	4.44060653155314	4.88713461118133	-0.609868568398891	0.129445083771056	0.400360889731452
Merged-chr2-29787637-4	chr2	29787524	29787724	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290496)	promoter-TSS (NM_001290496)	47.0	NM_001290496	227682.0	Mm.245739	NM_145520	ENSMUSG00000039826	Trub2	G430055L02Rik	TruB pseudouridine (psi) synthase family member 2	protein-coding	4.84163538411957	5.06419104593735	5.08431651311467	4.40562904509985	5.1404719679165	4.90095404350496	5.23351886426418	4.83921327984516	0.36059731986189	0.320261657317046	0.632115478349849
Merged-chr15-59263666-3	chr15	59263539	59263739	+	936.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43309.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	3.99886764843251	3.959633301192	3.99946428719124	4.22172622134088	3.6939724666866	3.80162457813297	3.88628374005313	3.99705128234803	-0.606316549253039	0.170409719195488	0.463560227942354
Merged-chr6-116725454-4	chr6	116725357	116725557	+	876.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8699.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	4.70490692687538	4.29548929427053	4.17717183383993	4.14407278306861	4.56940731132782	4.304190547361	4.50620012136178	4.31728294210392	0.228947672062689	0.567705881997379	0.808331754798167
Merged-chr14-103815746-3	chr14	103815643	103815843	+	973.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007904, exon 7 of 7)	3' UTR (NM_007904, exon 7 of 7)	27958.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	4.44432120286554	4.73983128988878	4.78646033673476	4.90126841515334	4.06505041053756	4.22597369986342	4.54795260409903	4.39801862413797	-0.970253617263042	0.0131044885884961	0.0955309702212788
Merged-chr9-104244004-4	chr9	104243889	104244089	+	857.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 2 of 56)	intron (NM_001359740, intron 2 of 56)	18941.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	4.03219157773057	4.49541741975819	4.17557409497605	4.12152715276322	4.08486855825597	4.10445829977374	4.11185757187973	4.03043344817631	-0.343655042265358	0.408248518007666	0.704278459447095
Merged-chr1-34801715-4	chr1	34801605	34801805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183019)	promoter-TSS (NM_183019)	-17.0	NM_183019	226970.0	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	6.44365497194848	6.32783454861743	6.08588432188324	6.31820556824314	6.26073295604886	6.19614997699109	6.27367485580019	6.38993274281626	-0.0308428214283435	0.890426100860169	0.958997364311038
Merged-chr3-105877654-4	chr3	105877552	105877752	+	977.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	L1MEc|LINE|L1	6794.0	NM_001174169	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	4.95967059197518	5.08033301181846	4.88737063586308	5.15312281493279	5.34784687073731	4.72768776067274	5.00529777728494	5.02624409302775	0.052545311616984	0.874589238716965	0.952925927223413
Merged-chr4-15269730-4	chr4	15269581	15269781	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181401, intron 1 of 2)	intron (NM_181401, intron 1 of 2)	3861.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	4.19834432039658	4.03222556269679	4.80720265276114	4.73791795116272	4.13779550866388	4.37495507630082	4.13185164764689	4.24419208390937	-0.646189257456105	0.140074689592351	0.416157580026199
Merged-chr11-29429002-4	chr11	29428902	29429102	+	991.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176841, intron 5 of 31)	MIRb|SINE|MIR	54830.0	NM_176841	108686.0	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	5.38726929110065	4.99114947087208	5.5580053637003	6.02594226552359	5.55507952314426	5.65084405400157	5.52992306599072	5.35384459441758	-0.0688600544884605	0.839053789469786	0.938856878340637
Merged-chr10-89444411-4	chr10	89444309	89444509	+	986.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284344)	promoter-TSS (NM_001284344)	-442.0	NM_001033331	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	5.40468276373119	4.89842361038631	5.34900256094782	5.51127474319038	5.55032509494726	5.08346895740965	5.13701696980781	5.40183048584211	-0.00301286551505154	0.992584149824391	0.997258162727074
Merged-chr4-141790064-2	chr4	141790006	141790206	+	803.416626	f0_balb.idr|f1_c57bl6.idr	intron (NM_172338, intron 1 of 14)	intron (NM_172338, intron 1 of 14)	538.0	NM_172338	214063.0	Mm.39102	NM_172338	ENSMUSG00000040697	Dnajc16	2900037O03Rik|4732437J24Rik|D030060M24|mKIAA0962	DnaJ heat shock protein family (Hsp40) member C16	protein-coding	3.71080344593538	3.2479599160309	3.25234041827532	3.27567113383786	3.20705558694868	3.42639115238878	3.17884919295454	3.42250838793601	-0.250943327263862	0.648080774239147	0.851973023337718
Merged-chr14-55878606-2	chr14	55878506	55878706	+	728.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019820)	TTS (NM_019820)	5650.0	NM_019820	56410.0	Mm.97163	NM_019820	ENSMUSG00000040380	Cbln3	-	cerebellin 3 precursor protein	protein-coding	2.9482899982412	3.13544519776976	3.2250422477483	2.74883184438875	3.02203189359485	2.85623898988827	2.66928795008221	2.9471753854084	-0.594866623538762	0.361354171848409	0.66667409966046
Merged-chr2-51312215-4	chr2	51312142	51312342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70411.0	NR_040636	329404.0	Mm.417725	NR_040636	ENSMUSG00000086349	Gm13497	A730015I17	predicted gene 13497	ncRNA	5.89128875744166	5.901305534798	5.86926398145399	6.18134682000276	6.01193613383535	5.87160545703758	5.83943285545327	5.57947834694095	-0.223661522003481	0.390469427251585	0.69058015678842
Merged-chr14-19706634-4	chr14	19706559	19706759	+	918.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44598.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	4.5045666237981	4.83779160471389	4.50526183360547	4.46331394863079	4.75292702406675	4.92053665991332	4.83149259630109	4.74563199035592	0.487663060912215	0.158171843857255	0.445095395264695
Merged-chr1-136625520-5	chr1	136625436	136625636	+	877.4400019999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177643, exon 2 of 2)	exon (NM_177643, exon 2 of 2)	635.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	4.54864607956122	4.27768574373238	5.01582488722432	4.53628967172555	4.99391892839915	4.72547716163452	4.68965501497453	4.7828815020193	0.414218506581877	0.267195665298678	0.578889139572816
Merged-chr1-194995395-4	chr1	194995302	194995502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18443.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	8.03836479764875	8.2240583362931	8.06663298986772	8.59411728134602	8.1827877724957	8.14744232872822	8.61606763042388	7.96434093288233	-0.0107034499158393	0.959624206606865	0.985551429297447
Merged-chr6-120822362-2	chr6	120822277	120822477	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_007510, intron 1 of 8)	intron (NM_007510, intron 1 of 8)	321.0	NM_007510	11973.0	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	5.81408273823572	6.68487722578968	5.81510758306924	5.56565761605346	6.80262985325413	6.49270195151351	6.37062026323489	6.15917968551294	0.655091030228747	0.0423529912615324	0.208813712336678
Merged-chr18-24020857-4	chr18	24020791	24020991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021559)	promoter-TSS (NM_021559)	-78.0	NM_021559	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	6.47658274228682	6.23228842453615	6.09140824601896	6.21421471730201	6.53258417523592	6.56781290138738	6.72511444298595	6.59951610761803	0.515088978393593	0.017937622779591	0.118892080438449
Merged-chr1-24677814-3	chr1	24677753	24677953	+	815.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026719)	promoter-TSS (NM_026719)	-691.0	NM_026719	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	3.47365048362182	3.55496663544571	3.96894386510273	3.78590564071148	3.53681835046303	3.46164980596661	3.57562421891257	3.79119555826731	-0.363389403774713	0.467362790622344	0.746968519290045
Merged-chr16-11460425-4	chr16	11460334	11460534	+	873.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	54786.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	4.64583544262812	5.01735214380607	5.21347818234077	5.31456733118949	4.60640223557849	4.86406966326915	4.39893673291081	4.31206103489584	-1.07876416345155	0.00461333623195441	0.0447679154266234
Merged-chr19-3360097-4	chr19	3360032	3360232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 5 of 18)	PB1D11|SINE|Alu	-28725.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	6.52806484435896	6.78582119942114	6.28171811151198	6.04416250763356	6.74513633810167	6.86954585379715	5.86740886031645	6.37120198972324	0.127673448499428	0.670581331796178	0.8642024686037
Merged-chr3-52767495-4	chr3	52767379	52767579	+	951.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038079, intron 1 of 3)	intron (NR_038079, intron 1 of 3)	27755.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	4.54929200605433	4.63443746890938	4.68532900342354	5.37184098498485	5.15723898806888	4.90498687074873	5.18105842634121	5.08412561460688	0.391468977360693	0.312060394276494	0.623954234787678
Merged-chr14-73324855-7	chr14	73324761	73324961	+	906.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 1 of 26)	intron (NM_009029, intron 1 of 26)	961.0	NM_009029	19645.0	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb|pp105	RB transcriptional corepressor 1	protein-coding	4.11803851219112	4.35884012673486	4.49397714402385	4.3042460341334	4.04146939512265	3.91152801126326	4.05228858134576	4.33796697898702	-0.580511944931105	0.161489143989373	0.450310890073633
Merged-chr17-29494739-7	chr17	29494712	29494912	+	951.5476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008842, exon 6 of 6)	3' UTR (NM_008842, exon 6 of 6)	3767.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	3.95335859812572	4.22982800447556	3.95395302840997	2.8999954752683	4.20508936302472	4.41248026069087	4.17548797676597	4.39584598411032	1.08848997585121	0.0679116500656921	0.278113074047863
Merged-chr1-156471825-4	chr1	156471762	156471962	+	892.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	2466.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	4.31664557827117	4.01494760228443	4.31732884176338	3.95968801337839	4.13240114031634	4.2115681809074	4.37871515827604	4.51009305969926	0.408510600898849	0.319436418444267	0.631272275763354
Merged-chr2-148082488-1	chr2	148082388	148082588	+	711.666687	f0_c57.idr	Intergenic	Intergenic	-35519.0	NM_010446	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	3.30803427793071	3.38817312275478	3.37842893148283	3.42231043958519	3.89212457545996	4.05709734486947	4.19263407854009	3.97378443378818	1.94836252527025	5.62170909054761e-05	0.00125202638096398
Merged-chr8-33386277-4	chr8	33386212	33386412	+	857.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098233)	promoter-TSS (NM_001098233)	-13.0	NM_152821	75029.0	Mm.159402	NM_152821	ENSMUSG00000049184	Purg	4930486B15Rik	purine-rich element binding protein G	protein-coding	3.52503222869742	3.40168735204468	4.12565685277997	3.32840288631597	3.69971036025479	3.64380128529725	3.72571092862883	3.63608697063214	0.154908102352433	0.770711944990038	0.910265273875382
Merged-chr2-75703965-4	chr2	75703916	75704116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	CpG	647.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	7.81653860114478	8.20084909630451	7.89466059776913	7.49444139662477	8.40495732452739	8.56491317627982	8.11115008858672	8.00994303397516	0.541072227855468	0.0116844433716339	0.0881491250396959
Merged-chr8-11341341-4	chr8	11341245	11341445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-28519.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	6.92683411373398	6.8819811132125	6.80505131560203	7.11230729147106	6.85209490845933	6.9818734556734	6.90589307546518	6.93608963836288	-0.0461808038113578	0.813980656327493	0.928171624374974
Merged-chr13-54686004-2	chr13	54685904	54686104	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027396, intron 1 of 10)	MIRb|SINE|MIR	1804.0	NM_001146025	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	3.04823458068614	2.83795449369653	2.98909120022677	2.91025207274531	3.05892835082719	3.03456832843639	3.03717902093974	3.04702894984097	0.424288943632818	0.457605963909948	0.740689110061175
Merged-chr10-128340497-4	chr10	128340401	128340601	+	841.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026444, intron 1 of 10)	B1_Mur4|SINE|Alu	2774.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	3.49557452229847	4.08576799507059	3.6829300304383	3.5501382608946	3.89324597251492	4.0696627635532	4.18358107095377	3.94363494093333	0.850574952394873	0.0725116863245413	0.289480232923888
Merged-chr7-99865401-4	chr7	99865304	99865504	+	779.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164258, intron 2 of 18)	intron (NM_001164258, intron 2 of 18)	6186.0	NM_001164258	446101.0	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	3.63364894606338	3.35488924453388	3.16859297587915	3.62634972868803	3.49339061146585	3.53618641793458	3.6186923482828	3.47655611749527	0.202224561109247	0.698799162966944	0.878505428649175
Merged-chr18-88772957-3	chr18	88772857	88773057	+	810.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121250.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	3.68755079446688	3.59800170156571	3.73979216062014	3.74132727557883	3.6640032337375	3.63503476382381	3.62011129631773	3.96823215767183	0.100260122137501	0.829906198233713	0.934690278259685
Merged-chr16-4559051-2	chr16	4558951	4559151	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031182, intron 1 of 6)	CpG	669.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	4.82761569310284	5.10405399644613	4.55724771699103	4.63268360559259	4.66721065746119	4.39897793723038	4.73404409700241	4.75348718895292	-0.307808660456426	0.400688306553634	0.698422085421392
Merged-chr3-14881573-4	chr3	14881475	14881675	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44D|DNA|TcMar-Tigger	-4694.0	NM_001357334	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	5.00606323434744	5.71889498313969	5.37742240944029	4.69762687511787	5.94293484487092	5.58151824099553	5.48781450442894	5.00353051933367	0.523393192014547	0.171837771782956	0.465124394984604
Merged-chr3-95637392-4	chr3	95637353	95637553	+	907.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	12473.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	4.5031819826043	4.01596247541891	4.31502846456652	4.44366696727716	4.04407633751921	4.00459614748835	3.92249550732463	4.04070111120435	-0.851426988721036	0.0437114430786871	0.212820171067644
Merged-chr14-103843889-5	chr14	103843721	103843921	+	916.286682	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007904)	promoter-TSS (NM_007904)	-120.0	NM_001276296	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	4.18182869619237	4.39189065731672	4.18247007511912	4.44820748151397	3.60370406934494	3.99991245050013	4.20800670672504	4.22439676421096	-0.747244466854661	0.0966580325814731	0.340574096588254
Merged-chr2-157079289-4	chr2	157079182	157079382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164663)	promoter-TSS (NM_001164663)	-17.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	5.79881102765934	5.98084179725697	5.52312935374185	5.59757310126856	5.59636330688095	5.55162285683488	5.52307362959892	5.33852036069985	-0.377218883815701	0.174801482179067	0.469392790584517
Merged-chr5-66190580-4	chr5	66190470	66190670	+	840.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040695, intron 1 of 2)	intron (NR_040695, intron 1 of 2)	765.0	NR_040695	73639.0	Mm.48851	NR_040695	ENSMUSG00000107014	1700126H18Rik	-	RIKEN cDNA 1700126H18 gene	ncRNA	4.28521095101836	3.98972953293856	4.02334901306655	4.34164373251195	4.10258671166763	4.19506659309143	3.7983651752625	3.69178506173553	-0.553191113988147	0.222379969822676	0.530420428819849
Merged-chr10-81627351-1	chr10	81627251	81627451	+	1000.0	f0_c57.idr	promoter-TSS (NM_001163430)	promoter-TSS (NM_001163430)	-29.0	NM_001163430	50721.0	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	5.72604673265199	5.9655711972348	5.56232873985191	5.49590647134331	5.75271474682204	6.04783052037694	6.14542398636413	6.05987304331479	0.501746438481431	0.0613053941213165	0.261971342268187
Merged-chr14-32165761-5	chr14	32165694	32165894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019744)	promoter-TSS (NM_019744)	5.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	5.46138407244385	5.37682485572482	5.7350195165054	5.02899643390101	5.44173711657804	5.21989319404497	5.58980233482926	5.45849425588412	0.0542919567369408	0.862214035783591	0.948042524956209
Merged-chr3-121815182-5	chr3	121815100	121815300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355756)	promoter-TSS (NM_001355756)	102.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	6.12663239244933	6.08682004677776	6.14836047865881	6.30882824983205	6.06462362152338	6.36426721890521	6.37383328980189	6.3335719266307	0.151350587394074	0.51450646333345	0.777082308467222
Merged-chr19-53394819-4	chr19	53394735	53394935	+	997.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-4201.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	5.28017483639168	5.33723295359726	5.36900402572277	5.18095496584909	5.34370628873458	5.54139303944328	4.98792490941176	5.14996626051406	-0.0238677176132153	0.936983243308407	0.977204440107264
Merged-chr1-133661415-4	chr1	133661261	133661461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166552)	promoter-TSS (NM_001166552)	38.0	NM_144530	70579.0	Mm.245357	NM_144530	ENSMUSG00000102976	Zc3h11a	1110003F06Rik|5730454B08Rik|G630041M05Rik|Zc3hdc11a|Zc3hh11a|mKIAA0663	zinc finger CCCH type containing 11A	protein-coding	6.46571116532654	6.71024793729655	6.55246541666553	6.4247994610412	6.86761627847271	7.00859263674066	6.73071919007534	6.49715301183947	0.362318541979885	0.0983590615307361	0.343916080006694
Merged-chr10-127340098-3	chr10	127339987	127340187	+	710.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010296, intron 2 of 12)	intron (NM_010296, intron 2 of 12)	1492.0	NM_010296	14632.0	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	3.21434153447863	3.6323714680053	3.45690235888288	3.6740022485597	3.25550926015853	3.4545106343861	3.64474208476836	3.33969645621575	-0.296121246794283	0.582365920703301	0.816519074787564
Merged-chr4-138133575-3	chr4	138133482	138133682	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355700, intron 8 of 30)	intron (NM_001355700, intron 8 of 30)	4936.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	5.87555105263037	6.13086237781153	5.85641046588803	6.19762064318342	4.56822547663599	4.53972064655957	4.54719198833985	4.8555657026729	-2.63315513072498	6.32531352124944e-16	1.18794060983909e-13
Merged-chr5-34526952-4	chr5	34526867	34527067	+	870.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	1183.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	4.04440997038411	3.6538687575267	4.1335920587165	3.91292832702446	3.51521596049536	4.07364678280364	4.02695245254139	4.17291316561314	0.0553235239432268	0.908675091233443	0.966100563913989
Merged-chr6-84640823-3	chr6	84640730	84640930	+	863.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 20 of 21)	intron (NM_177077, intron 20 of 21)	-46922.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	3.4683271317032	3.23987176647722	3.9170847621725	3.71143643289073	3.37530142175063	3.05905718958877	3.01723157712971	3.41192483690912	-1.32185616049677	0.0304997870654256	0.169047291660044
Merged-chr4-95162477-4	chr4	95162380	95162580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110258.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	6.94824754630501	6.62321075550774	7.01410567390773	7.02289539952498	7.17487444691206	7.19116190687439	7.38268358526605	7.35852467509959	0.49558352302326	0.0126532187497087	0.0932922578605256
Merged-chr5-122209935-3	chr5	122209818	122210018	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028752)	promoter-TSS (NM_028752)	189.0	NM_001042489	74096.0	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	4.53259245808041	4.57891817127012	4.83449822612769	4.31755680600849	3.67881924453879	4.4593272908601	3.95861976608081	4.18558681968997	-1.17556543058035	0.00971879372674601	0.0773363911320351
Merged-chr7-142057024-4	chr7	142056941	142057141	+	820.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357705, intron 1 of 4)	intron (NM_001357705, intron 1 of 4)	3812.0	NM_001347560	101513.0	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	3.62509382829243	4.18341416650354	3.50392393522013	3.69072744234725	3.8405811160694	4.14756394785201	3.55316150494991	3.68046440976079	0.126943421981264	0.805630424253795	0.92521045259115
Merged-chr15-27680782-4	chr15	27680689	27680889	+	988.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	753.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	4.82172242050578	4.73421715081306	4.670963691189	4.86079129800502	4.63448081279856	4.63100848989216	4.79950347352309	4.95447190248866	-0.048878725318264	0.885014744782373	0.956868252253615
Merged-chr8-14879327-4	chr8	14879235	14879435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR31C_MM|LTR|ERVK	-9201.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	5.69153592602499	5.86683125344684	5.83806604919323	5.76639026019927	5.67498732887246	5.55228896715346	5.7620007393244	5.92227334710434	-0.0947453410511766	0.710562405686977	0.884197177759025
Merged-chr4-109202167-4	chr4	109202052	109202252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133885, exon 1 of 23)	exon (NM_133885, exon 1 of 23)	120.0	NM_133885	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	6.92638834715264	6.96841930602144	7.27892995620935	6.67604429465543	6.31761956380463	6.77319315904298	6.74513774077263	6.67080595145801	-0.481468550023773	0.0405934813022081	0.203608160496785
Merged-chr13-58074992-4	chr13	58074895	58075095	+	869.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 5 of 16)	L1M2|LINE|L1	27433.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	4.37144101804344	4.88587734509404	4.53570735804553	4.60284628413496	4.57697352686274	4.03064581645713	4.21594660428446	3.90413384592661	-0.912098663876266	0.0384778408162526	0.196782169238399
Merged-chr17-70974328-4	chr17	70974236	70974436	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023402, exon 4 of 4)	exon (NM_023402, exon 4 of 4)	16180.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	6.06155147281964	6.28104205665158	6.22333547063489	5.01586911599034	6.43262798073268	6.41767923226392	6.24625003618155	6.18057218920832	0.532730043260841	0.109140969944936	0.364788932180249
Merged-chr19-34192268-4	chr19	34192172	34192372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360716)	promoter-TSS (NM_001360716)	43.0	NM_029682	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	6.12209603705904	6.19025406669503	6.36797469953679	6.05906313418472	6.27968088990385	6.41671825224789	6.05013372561064	6.21865863985971	0.103143585879827	0.657995893143222	0.857633602881183
Merged-chr18-62977862-4	chr18	62977814	62978014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028017)	promoter-TSS (NM_028017)	-2.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	6.88178989336419	6.98206126715555	7.09251025534532	6.86192055270836	6.75119416140758	6.9620005894903	6.8346976083847	6.89148231646487	-0.133451644176107	0.493221415043186	0.764078058767225
Merged-chr5-143528106-4	chr5	143527998	143528198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009007)	promoter-TSS (NM_009007)	-67.0	NM_001347530	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	6.92021105288509	7.04408686499684	7.07564940343781	6.92976251290905	7.37999034797777	7.38956118786485	7.2603982406695	7.05852205296483	0.398301991165387	0.0349675892563559	0.185190054360943
Merged-chr2-145857963-2	chr2	145857863	145858063	+	870.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 7 of 12)	intron (NM_028724, intron 7 of 12)	-45278.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	3.163006747391	3.15209543288615	3.27546477549954	3.02776188287942	3.22584980376696	2.86271321026028	2.965730942183	3.47121027913761	0.0129634810943907	0.982811142024444	0.993865312500427
Merged-chr1-33892960-4	chr1	33892844	33893044	+	852.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	14677.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	3.30772649745049	3.51950478323917	3.37367109703716	3.67449457523832	3.50285303814058	3.83098775358019	3.4828240755113	4.05273265983071	0.764414309168521	0.150612584389281	0.433394774589449
Merged-chr11-53532420-4	chr11	53532331	53532531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252333, intron 2 of 9)	intron (NM_001252333, intron 2 of 9)	12243.0	NM_001361969	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	7.03740901121859	6.82431110045397	6.52347675569383	6.33524832191325	7.00174520815011	6.799641679015	6.55684297858959	6.72465799173801	0.128306557029444	0.601210886211859	0.827071740947179
Merged-chr2-66170555-3	chr2	66170438	66170638	+	884.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45745.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	3.99665483271515	3.88358885063363	4.17870054524674	4.53356296636831	3.76356004827624	3.78568045265817	4.07312599739673	3.89368011872881	-0.828884634931617	0.0764022625981278	0.298608407545507
Merged-chr2-52858660-7	chr2	52858448	52858648	+	945.642883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	CpG	680.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.74966253609939	3.93500325251143	3.80148500630846	3.95129717178604	3.80042205375175	3.69881958230288	3.68253870600156	3.74809366005094	-0.393466225005048	0.383666097927173	0.685509174712643
Merged-chr18-61638124-4	chr18	61638000	61638200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1553.0	NR_045420	545261.0	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	6.10130976069451	6.42335257471858	5.82328471272366	6.01262797988378	6.29456619341195	6.45213912845459	6.02895524217628	6.11871950198964	0.192263376380371	0.451575556990558	0.736149171862599
Merged-chr1-78702555-3	chr1	78702457	78702657	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033606, intron 12 of 14)	intron (NM_001033606, intron 12 of 14)	44117.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	6.16407931025607	5.71164859973188	6.1148567400995	6.48499841965188	4.37553002337531	4.57028842031742	5.17456299031558	4.53888043274244	-2.67931546171142	3.40870450675319e-13	3.99716932596681e-11
Merged-chr12-16878814-3	chr12	16878742	16878942	+	996.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16136.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	6.15175469814024	5.46580641144683	5.10874750256883	5.63761488562197	3.91711961584151	4.1584238412371	3.93226790111625	3.7982121240625	-4.00249920461156	1.42978827552137e-15	2.51908167483503e-13
Merged-chr7-101061419-3	chr7	101061267	101061467	+	935.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47408.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	4.04985590979573	3.99427622748603	4.13607881017925	3.72541519437367	3.6191340219744	3.75632338604046	3.56181148616983	4.21332738567932	-0.469002993421353	0.340359661361151	0.649455684748532
Merged-chr10-95372102-4	chr10	95372009	95372209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35833.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	6.6347764015526	6.68795919789743	6.5729041873536	6.23682134987646	7.13682189911322	6.79681625498327	6.38548290004217	6.50188072736696	0.309607707005218	0.227355271655095	0.536049324367241
Merged-chr17-23741010-2	chr17	23740874	23741074	+	980.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023824)	promoter-TSS (NM_023824)	-644.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	3.13627838891378	3.30743697127717	3.53769030140541	3.44092822061535	3.14917419828834	3.37703622310536	3.31141670392091	3.58372872619186	-0.0257321635140323	0.962376042403588	0.986533848756336
Merged-chr1-51907891-4	chr1	51907790	51907990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010863, intron 1 of 29)	intron (NM_010863, intron 1 of 29)	8088.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	6.72798512108055	6.89527515969888	6.8577029621743	7.08049064999246	6.87919103706453	6.93540476110529	6.88886027758118	6.67868099016795	-0.085067154569538	0.675743923733966	0.866921233647741
Merged-chr16-49853153-4	chr16	49853058	49853258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2496.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	6.10342872699319	6.16784784641956	6.14489332815905	6.28257897908251	6.0752129561985	6.19537089571007	6.03184644435452	5.85175783706038	-0.218461364974575	0.350698240157195	0.658186562602986
Merged-chr11-29147272-3	chr11	29147175	29147375	+	716.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027869, intron 15 of 27)	(TG)n|Simple_repeat|Simple_repeat	16524.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	3.33670933342533	3.42433896146265	3.39707548993206	3.12370272402441	3.85296295901668	3.67981596802878	3.49505619073635	3.33544975105694	0.999341011491734	0.0558972125349853	0.247447458861106
Merged-chr5-90655974-3	chr5	90655879	90656079	+	900.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15452.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	3.53281024366762	3.15732333731037	3.27002567300408	3.89029747642697	3.09906704787398	3.0493292497739	3.25777152527914	3.01155651232922	-1.49507968184522	0.0155443642187355	0.107545907924317
Merged-chr5-86190532-4	chr5	86190450	86190650	+	881.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310653, intron 1 of 1)	ORR1C2|LTR|ERVL-MaLR	7351.0	NM_001310653	14715.0	Mm.26791	NM_010323	ENSMUSG00000029255	Gnrhr	-	gonadotropin releasing hormone receptor	protein-coding	4.66259608635095	4.4515982282952	5.053260940581	4.37488542027954	6.64599073370421	6.61038147317042	6.96010351614042	6.85917802718712	3.58352854070458	1.63136795032302e-36	3.41526880400124e-33
Merged-chr2-109959324-4	chr2	109959246	109959446	+	913.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172671, intron 1 of 17)	intron (NM_172671, intron 1 of 17)	41699.0	NM_172671	107515.0	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	4.74475539412135	4.2818085364745	4.50932660703853	4.57313258081772	4.88201448879188	4.64106372578655	4.8575821667472	4.50648237578827	0.432850845708959	0.233225674463754	0.542863819371105
Merged-chr3-79678814-2	chr3	79678714	79678914	+	887.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_212452, intron 4 of 17)	intron (NM_212452, intron 4 of 17)	49735.0	NM_029482	75939.0	Mm.221520	NM_029482	ENSMUSG00000027811	4930579G24Rik	-	RIKEN cDNA 4930579G24 gene	protein-coding	3.45315731960807	2.98838738357184	3.33577609116299	3.49956030983313	3.38076246331689	3.62637101386374	3.90070374869402	3.45172317831986	0.864671452283482	0.126666190599779	0.39568036428955
Merged-chr4-6514971-4	chr4	6514874	6515074	+	787.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60703.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	4.52688495823846	4.295876143345	4.31283275450792	4.28955132614598	4.40858884341683	4.87923344899161	4.42561814160307	4.40030929692171	0.422633460038269	0.267887324563748	0.579713969205978
Merged-chr17-64894969-3	chr17	64894878	64895078	+	776.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58907.0	NM_030031	78057.0	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	3.19649464090649	3.35966590739751	3.50810360219186	3.33124741978319	2.78993578989695	3.04772068021594	3.12562730674596	3.1352568555777	-1.33386120949695	0.0261015798297801	0.152932613164779
Merged-chr6-32591547-4	chr6	32591437	32591637	+	955.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3345.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	4.7200218557461	4.48277220255807	4.72078797040635	4.70336872674801	4.68795047046403	4.69172506054815	4.73558871309665	4.95672252378051	0.230412884393888	0.499110102976034	0.768199585255614
Merged-chr6-91706262-4	chr6	91706164	91706364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	22197.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	6.68141919236457	7.14404590255382	6.36753883721654	6.61147363168073	6.9956982608035	7.18437386902083	7.00816229808014	6.54741910752726	0.30927379129748	0.219350720289985	0.526898155856389
Merged-chr6-56569145-4	chr6	56569036	56569236	+	920.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135563.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	4.82159288992764	4.54130251001351	4.78595150274636	5.4226299983006	4.69297601197115	4.53304157056855	4.76315206733185	4.53962267395009	-0.664016928510699	0.0923973346623533	0.332518362371277
Merged-chr10-24468866-4	chr10	24468766	24468966	+	920.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126576.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	4.46439551844033	4.64208417336796	4.51035684002316	4.69591999903444	4.87457526499366	4.92446904934199	4.80152329755705	4.71261951227082	0.498654858826126	0.142942045366339	0.420976100831428
Merged-chr5-115339120-4	chr5	115339014	115339214	+	710.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029645, intron 1 of 2)	B3A|SINE|B2	2047.0	NM_029645	384281.0	Mm.229308	NM_029645	ENSMUSG00000029536	Gatc	2010003O18Rik	glutamyl-tRNA(Gln) amidotransferase, subunit C	protein-coding	3.92555354077006	3.86280236022612	3.82018013599749	3.92520027197952	3.98918551267031	4.36706720788011	3.80515754049982	4.15556754055901	0.546092825430483	0.211076563802154	0.515716175112166
Merged-chr9-53676329-2	chr9	53676229	53676429	+	872.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-8822.0	NM_027807	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	3.29493631919707	3.40006409072703	3.35955461525796	2.97673974914403	3.80159755064499	4.03928307069537	3.46556208688017	3.58746704302707	1.61970298960384	0.00242650452180322	0.027131034457655
Merged-chr16-10970800-4	chr16	10970706	10970906	+	835.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	22315.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	3.80653610212419	4.04710125370394	3.03527154999083	3.24185930269824	3.57476272524886	3.62326267803707	3.37378262229827	3.50283757675144	-0.239250395800918	0.6995550885517	0.878859435133761
Merged-chr5-96162625-4	chr5	96162511	96162711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178854)	promoter-TSS (NM_178854)	-621.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	6.53074666053868	6.74340158431303	6.85232728930863	6.90699143412405	6.95944937220498	6.76024981433058	6.81756831911308	6.87410750644112	0.117152396717247	0.567133601832862	0.808124048747935
Merged-chr1-135660311-3	chr1	135660201	135660401	+	967.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59762.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	4.03767658894655	4.09507522742563	3.94428658453491	4.10428059495216	3.55311990278417	3.96377557451564	3.82737160897028	3.94194736758368	-0.650469656290607	0.147629194343497	0.428849464317666
Merged-chr6-51469983-4	chr6	51469905	51470105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182650)	promoter-TSS (NM_182650)	-111.0	NM_016806	53379.0	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	8.56512100775648	8.54491876859349	8.64026859389764	7.98847419676388	8.34911586559735	8.25858372212054	7.54815834613416	7.9722154858927	-0.487211969392886	0.034385106878811	0.183305686228796
Merged-chr1-16665244-4	chr1	16665151	16665351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026392)	promoter-TSS (NM_026392)	60.0	NM_026392	70397.0	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	6.32868929773624	6.17551814873667	6.59041441484467	6.59336507320621	6.12810926802234	6.03130018667251	6.38436953790952	6.19176890220314	-0.378871636984632	0.112361200411548	0.370578866532613
Merged-chr6-124981984-3	chr6	124981897	124982097	+	869.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-14723.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	3.22854123804318	3.50626392551744	3.16468293459352	3.19422932001386	3.39852658269597	3.72543879215814	3.39329296518682	3.51098072208912	0.814088790702195	0.121794754406777	0.386639408791364
Merged-chr11-59519077-4	chr11	59518981	59519181	+	752.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12441.0	NM_172941	268417.0	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	4.01773056649459	3.84931399095698	3.62571374729926	3.71172129487496	3.99754088731794	3.55665138427326	3.82088362056771	3.62382336170878	-0.0956328084547984	0.842454533587685	0.940205423428672
Merged-chr8-105706076-2	chr8	105705976	105706176	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198299, intron 4 of 7)	ID_B1|SINE|B4	2092.0	NM_198299	102124.0	Mm.276087	NM_198299	ENSMUSG00000013155	Enkd1	AI606951|E130303B06Rik	enkurin domain containing 1	protein-coding	2.87509581765568	2.78456871113492	2.80765199847273	2.56305912526101	3.01582979925583	3.05157224265996	3.04781988127215	3.31724296385496	1.60670223680496	0.00850343164578946	0.0701269564495015
Merged-chr14-8255582-3	chr14	8255482	8255682	+	921.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053115, intron 4 of 14)	MER91B|DNA|hAT-Tip100	3257.0	NM_001161667	93732.0	Mm.28700	NM_053115	ENSMUSG00000021751	Acox2	THCCox	acyl-Coenzyme A oxidase 2, branched chain	protein-coding	3.84604203911924	3.87598588723839	3.53895906280156	3.73306097311259	3.60076981474485	3.8716348722544	3.27515866996488	3.47803134685258	-0.566267570612553	0.269541583550204	0.581238507864386
Merged-chr11-85126972-2	chr11	85126872	85127072	+	731.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029934, intron 1 of 33)	intron (NM_001029934, intron 1 of 33)	12983.0	NM_001029934	237898.0	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	3.23964325282654	3.34480985765932	3.17418909746787	3.15722535040216	3.8975225068416	3.4169908000514	3.51276620325427	3.52553551425849	1.31434996810382	0.0116129177575652	0.0877863076747804
Merged-chr4-134714165-4	chr4	134714057	134714257	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-9867.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	5.15784990093397	5.18263122018104	4.84023281437742	4.99912842318865	5.62011280873327	4.89488456401326	5.27963892261651	4.71099420292374	0.264598200828066	0.465116432220692	0.745726377498291
Merged-chr16-23279970-4	chr16	23279876	23280076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-10494.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	7.27296608096912	6.8967046192899	7.29450849158192	7.24122441350219	6.9066504892524	6.83018165535661	7.13156904437906	7.12867077678923	-0.2494722836624	0.218505088057789	0.525782572429468
Merged-chr13-21783935-4	chr13	21783900	21784100	+	894.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178207)	promoter-TSS (NM_178207)	-603.0	NM_178207	319153.0	Mm.390558	NM_178207	ENSMUSG00000101972	Hist1h3i	H3-H	histone cluster 1, H3i	protein-coding	3.88236212024559	4.37652174055222	4.03949464240574	3.64551336298148	4.1411738247009	4.39270569295095	4.06987689510744	4.08529094571788	0.442573951898134	0.332716460366761	0.643596622888976
Merged-chr10-118050491-4	chr10	118050388	118050588	+	971.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91299.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	4.99276352722973	4.73712643613783	5.45200559765806	5.05865514227271	5.02121015080112	5.05786614971279	5.3723177175597	5.61537323214222	0.379666428496234	0.27146390259516	0.583222139604812
Merged-chr10-111977793-4	chr10	111977671	111977871	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178610, intron 5 of 9)	intron (NM_178610, intron 5 of 9)	5076.0	NM_178610	52705.0	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	5.19184247573124	4.8442414742102	4.72609536150837	5.15846565748289	4.68241866260828	4.48836547314897	4.88946523501276	4.9441408328024	-0.488736186289336	0.165191611348493	0.455772085768736
Merged-chr2-163580352-3	chr2	163580246	163580446	+	964.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21968.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	4.10149155024498	4.24872256052548	4.05991457507786	3.85121377610437	3.40930105456704	3.52134643259742	3.52520307375143	3.92157205717708	-1.39145194627071	0.00554388523345374	0.0512744551756761
Merged-chr4-136031445-4	chr4	136031330	136031530	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9781.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	5.36662267127764	5.65814452392927	5.42671266460699	5.315026504025	5.71913719060867	5.73666458990461	5.03735351457337	5.42292095693981	0.1229715784891	0.690386838590954	0.873911902618086
Merged-chr11-4895343-4	chr11	4895239	4895439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172438)	promoter-TSS (NM_172438)	-4.0	NM_172438	107829.0	Mm.28969	NM_172438	ENSMUSG00000034274	Thoc5	1700060C24Rik|A430085L24Rik|Fmip|PK1.3|Sgk2	THO complex 5	protein-coding	6.20430996712094	6.25466600046623	5.98694368740067	6.17099003586373	5.72166467597828	5.90023750017754	5.95633234442211	5.51671884533005	-0.603002060715568	0.0162174536371407	0.110738884539336
Merged-chr6-15746093-3	chr6	15745994	15746194	+	842.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	25433.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	3.83460571620536	3.54484206607861	4.01859092067321	4.36074100407453	3.52017720733333	3.48232459780602	3.91263761598391	3.49789416199128	-1.09382137094768	0.0408456590677162	0.204367281251642
Merged-chr19-4097265-4	chr19	4097147	4097347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026373)	promoter-TSS (NM_026373)	-104.0	NM_026373	52004.0	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	8.57492709806085	8.54572896051565	8.53871058654368	8.37396744558769	8.73028646732781	8.61210579829936	8.50412070130056	8.25087772837263	0.0419722733487636	0.802827577936233	0.923936032101707
Merged-chr8-13649348-4	chr8	13649260	13649460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	L1M4|LINE|L1	28227.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	6.39706671422998	5.8373021252146	6.41423381749354	6.54588074198899	5.81480098712643	5.46871464870771	5.92758989096628	6.10465361435073	-0.748014349216451	0.00828949817381542	0.06883176032948
Merged-chr6-58831614-5	chr6	58831492	58831692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001361967, exon 1 of 23)	5' UTR (NM_001361967, exon 1 of 23)	127.0	NM_001361966	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	6.33742900855724	6.2337825176002	6.80008313135502	6.63345009044931	6.18725360310209	6.55145122542616	6.36041844963045	6.37064880804408	-0.234014446714322	0.330912473222173	0.642104407905452
Merged-chr19-28454815-3	chr19	28454714	28454914	+	905.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175459, intron 4 of 10)	intron (NM_175459, intron 4 of 10)	-223410.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	3.706919916374	3.51325094505563	4.09392574911086	4.22175813444762	3.17474675837342	3.27068830410701	3.47593296250633	3.22739781323756	-2.17360089539275	0.000180252715464261	0.00333682570035335
Merged-chr2-160646518-5	chr2	160646516	160646716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009408, exon 2 of 21)	exon (NM_009408, exon 2 of 21)	719.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	4.68931514037985	5.36401821667673	5.14221502743675	4.35812210829233	5.22190030587075	5.34808626758789	4.62313163642111	5.65295538982807	0.592957334185096	0.156845873572187	0.44298597075608
Merged-chr7-102314302-3	chr7	102314200	102314400	+	867.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 1 of 11)	intron (NM_009287, intron 1 of 11)	46476.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	3.37661839944182	3.35920586305515	3.25709445866374	3.60757913454415	3.76271886569749	3.36815532813544	3.36464543885211	3.31682814141458	0.197546675305922	0.716499290415945	0.886612130880646
Merged-chr2-43902810-4	chr2	43902712	43902912	+	887.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 6 of 14)	intron (NM_001301831, intron 6 of 14)	153988.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	3.99742651032086	3.75253231842306	4.0474252749423	4.32858940765735	4.40406235520908	4.21924929160267	4.03029334662925	3.94439296665395	0.269422074025536	0.553126118470102	0.799974396526481
Merged-chr9-54917164-4	chr9	54917057	54917257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177351)	promoter-TSS (NM_177351)	-133.0	NM_177351	235386.0	Mm.259334	NM_177351	ENSMUSG00000035878	Hykk	Agphd1|C630028N24Rik	hydroxylysine kinase 1	protein-coding	6.56213495876028	6.81858003247166	6.34989299058828	6.34947189136334	5.91627100013651	5.97940644838599	6.06156525417148	6.43171190630807	-0.635941761472528	0.0123589979902717	0.091675007421771
Merged-chr8-14891472-4	chr8	14891378	14891578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	2942.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	7.84071570174348	7.83800351688251	8.37217916136229	8.27641120432527	7.63023841681586	7.77644176579548	8.04548475693829	7.93203777633427	-0.333313633904245	0.10122864038177	0.349257412518365
Merged-chr15-6709266-2	chr15	6709166	6709366	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030168, intron 2 of 37)	CpG-4767	885.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	3.27194317487572	3.05249834313025	3.32708023929067	3.01567206376003	3.30262348220098	3.13703431216342	3.20321592417137	3.37751645358337	0.370282967804791	0.501814244677045	0.769427527857117
Merged-chr11-97684826-4	chr11	97684713	97684913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_139311, exon 20 of 20)	3' UTR (NM_139311, exon 20 of 20)	-1139.0	NM_001085500	217149.0	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	5.73847119310378	6.07381829618217	5.45876148135504	5.88709273550243	5.93454077646921	6.01090994394672	5.75951449976738	5.63048725774322	0.041682014286815	0.879176069519346	0.954746715269166
Merged-chr5-110058128-4	chr5	110058035	110058235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41834.0	NM_207279	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	6.57377411762551	6.68026812561617	6.8034885813436	6.94124690534952	6.64760288309809	6.64845934030548	7.0419794214448	6.90536916279463	0.0709974772217292	0.744686679280645	0.899328339302935
Merged-chr16-92021163-4	chr16	92021076	92021276	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-37146.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	5.91004891680623	6.09610216145541	5.2486721568136	5.31471731511881	6.16707537295569	5.53304950619124	6.00281644320675	5.47549981467758	0.240044876359607	0.48344998417604	0.757810293808838
Merged-chr11-98740680-4	chr11	98740572	98740772	+	840.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1113.0	NM_178060	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	3.94195875470094	3.69337053790223	3.57037413346764	3.56577851375039	3.62359083324251	4.19993245314589	4.13464447117557	3.56853915986241	0.609859541546992	0.222306323238349	0.530315094234949
Merged-chr2-132169367-4	chr2	132169288	132169488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-24068.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	7.67565446436108	7.98280624742252	7.7184659917598	7.74522102363407	7.67472978037018	7.73963488501247	7.89027377645658	7.7999309655049	-0.0144350821204787	0.932897715460755	0.975807528233788
Merged-chr6-113341734-4	chr6	113341652	113341852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133926, intron 2 of 11)	intron (NM_133926, intron 2 of 11)	2170.0	NM_133926	52163.0	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding	6.94680342425255	6.23912013026627	6.49288709610884	7.12265824861724	6.55441402177552	6.36280369858589	6.74884619532111	6.55503927597934	-0.285667177941352	0.28540307904105	0.597105888507119
Merged-chr11-21179247-4	chr11	21179148	21179348	+	628.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34A|LTR|ERV1	-59784.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	3.65108143058019	3.25838285146928	3.80110069187233	3.91875986274338	3.80856642296551	3.53543310620592	3.78457646529148	3.48068805304131	-0.0732555840942772	0.890125323610528	0.958852987370432
Merged-chr5-99235656-3	chr5	99235572	99235772	+	789.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	17255.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.29406912013428	3.37506482669227	3.12519630645451	2.57255530590296	3.09913247984694	3.29924451691005	3.11309600897036	2.85842796138845	-0.1196788739877	0.859776892672787	0.947015868335185
Merged-chr2-13786164-4	chr2	13786064	13786264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145838, intron 2 of 7)	L1_Mus4|LINE|L1	7356.0	NM_145838	241230.0	Mm.330004	NM_145838	ENSMUSG00000003418	St8sia6	1700007J08Rik|AI314453|AI875066|ST8SiaVI|Siat8f	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding	6.28250524977452	6.72638476611321	6.3555538610614	5.40492405700848	6.46948973037699	6.05170097949089	6.43896347723463	6.05731020344653	0.00407335779177331	0.990109636407448	0.996085111514102
Merged-chr3-10331302-4	chr3	10331202	10331402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001010834)	TTS (NM_001010834)	137.0	NM_001310433	55980.0	Mm.183042	NM_018864	ENSMUSG00000027531	Impa1	2610002K09Rik|2900059K10Rik|AI325909	inositol (myo)-1(or 4)-monophosphatase 1	protein-coding	6.83571859107801	6.87892656770004	7.57590127156715	7.10127905837124	6.52890821567482	6.65007649235967	6.38156997862672	6.80413641406344	-0.749145869099117	0.0021571748132716	0.0248004783536771
Merged-chr8-39955681-3	chr8	39955582	39955782	+	903.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6C|LTR|ERVK	-313004.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	3.84610846760894	3.48134105072193	4.70972019129158	4.78272868335915	3.06509901561134	3.25335857000268	3.27629063421287	3.20849178396299	-3.98515952875874	8.07242806008131e-08	3.5142957607861e-06
Merged-chr11-118446057-4	chr11	118445968	118446168	+	941.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045902, intron 2 of 2)	intron (NR_045902, intron 2 of 2)	2534.0	NM_001204130	56745.0	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	4.44812386787984	4.53251881789923	4.06077873392033	4.33969039505989	4.55162677762391	4.53578383659873	4.4694091068844	4.63979921885219	0.43885548806597	0.24092224950284	0.55152622125117
Merged-chr12-81788872-4	chr12	81788775	81788975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7705.0	NM_001174107	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	6.23890055579193	6.31454796553487	6.04827719544137	6.61617183184664	6.41757252239097	6.4551548708285	6.35633386997292	6.51755043454405	0.138117211386742	0.562721927808041	0.805801679832791
Merged-chr5-8893725-4	chr5	8893641	8893841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008830)	promoter-TSS (NM_008830)	20.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	6.50944948280729	5.96579094325958	6.12938608707165	6.56957483491372	5.96786939555312	5.90742019761326	6.17604441817184	5.72369874756028	-0.575967705917118	0.0317093875116494	0.173672090927339
Merged-chr7-63753532-4	chr7	63753424	63753624	+	876.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130880, intron 11 of 13)	intron (NM_130880, intron 11 of 13)	-163333.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	4.18271181407014	3.9682279665568	3.53715317332531	3.96949183787091	4.1279786819064	4.26579073093288	3.88352174292383	4.22236737947168	0.514930744762465	0.25794662561219	0.569755868563229
Merged-chr13-55635009-4	chr13	55634990	55635190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282055)	promoter-TSS (NM_001282055)	91.0	NM_001282055	212880.0	Mm.202725	NM_145975	ENSMUSG00000021500	Ddx46	2200005K02Rik|8430438J23Rik|AI325430|AI957095|mKIAA0801	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	protein-coding	4.94655253661223	5.19777324903106	5.26969531188736	4.69860189665296	5.14121398486348	4.9701975681695	5.09360638403699	5.23726837416337	0.165083642246776	0.618186554648315	0.835863676650469
Merged-chr3-135281210-3	chr3	135281124	135281324	+	648.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172055)	promoter-TSS (NM_001172055)	3.0	NM_027208	69772.0	Mm.45121	NM_027208	ENSMUSG00000028167	Bdh2	1810026B04Rik|Dhrs6	3-hydroxybutyrate dehydrogenase, type 2	protein-coding	3.6580013620412	3.32685141924921	3.32373938893968	3.5655726675089	3.48625144302263	3.50029126835673	3.86434017566003	3.44335205354222	0.333236974066793	0.517613081735877	0.778953152798512
Merged-chr17-37246868-4	chr17	37246761	37246961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14493.0	NM_146512	258505.0	Mm.353371	NM_146512	ENSMUSG00000058802	Olfr97	MOR156-2	olfactory receptor 97	protein-coding	6.11837689903388	5.98774803828527	5.38145234782291	5.62521636597336	6.49102701013522	6.12497014018647	6.30665182964783	6.26572675764168	0.789474358179871	0.00354181411366278	0.0363784685131894
Merged-chr16-90677435-4	chr16	90677393	90677593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49878.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	7.29091378767477	7.06579524347624	7.26159910965979	7.49379375445668	6.88570869093873	6.90811574362925	7.04884975900051	6.67689262914813	-0.562668334213092	0.00584038131937386	0.0532468479593602
Merged-chr7-13034787-4	chr7	13034719	13034919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026885)	promoter-TSS (NM_026885)	-42.0	NM_001360731	68953.0	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik|mVps2	charged multivesicular body protein 2A	protein-coding	7.45098639872473	7.25992589285561	7.28616636847207	7.28861129621157	7.25210319807336	7.04657464461425	7.3107758677943	7.0525633909401	-0.196272670593987	0.288397462845544	0.600404884699707
Merged-chr1-134075800-4	chr1	134075706	134075906	+	798.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007570, exon 2 of 2)	3' UTR (NM_007570, exon 2 of 2)	3349.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	4.0057524045096	3.85049683935769	3.90551147929666	4.40104339995849	3.99202918607773	3.85756092651978	3.94057990562458	4.26548879275582	-0.147134576838112	0.749865109276895	0.901564247164595
Merged-chr9-40743851-4	chr9	40743692	40743892	+	979.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-57481.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	6.48233051650613	6.32896866523245	6.44144309258294	6.260248925268	4.94493016039992	4.98152152079066	4.81108493801735	5.09617891582749	-2.43466966894645	2.1272621980576e-17	5.03044504968578e-15
Merged-chr18-79271583-3	chr18	79271480	79271680	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-162189.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	3.51261089426306	3.39584954674286	3.8820916167648	3.66835210723823	3.63152182898169	3.56742961216167	3.86470026183434	4.08959066414857	0.522575608379867	0.29609750330892	0.608006121279299
Merged-chr17-37203064-3	chr17	37202994	37203194	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-5128.0	NM_001011518	258219.0	Mm.377382	NM_001011518	ENSMUSG00000043827	Olfr94	MOR256-32P	olfactory receptor 94	protein-coding	3.67108604761374	3.22517100838732	3.97455772304718	3.01738089051206	3.31798452094103	3.39213551370124	3.38764680425815	3.71724758138337	-0.203565749638706	0.735961871095828	0.895751244963882
Merged-chr9-88406065-4	chr9	88405986	88406186	+	679.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359958, intron 8 of 28)	MER5A1|DNA|hAT-Charlie	32865.0	NM_001359958	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	3.7276652549184	3.75144909789303	3.94741899991273	4.31832062135242	4.00804500700142	4.01744798295498	4.15878944273052	4.17514995791733	0.28643238983685	0.53838444225919	0.791573705188113
Merged-chr1-34483949-2	chr1	34483849	34484049	+	848.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-14463.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	2.40218189735665	2.40210562810592	2.40241009121999	2.36769689974026	2.60130447026697	2.7719983589129	2.59410534154397	2.60246244218183	1.35188849587311	0.0438665023445744	0.213364341286351
Merged-chr10-95418034-4	chr10	95417918	95418118	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045339, intron 1 of 4)	intron (NR_045339, intron 1 of 4)	643.0	NR_045338	70523.0	Mm.158398	NR_045338	ENSMUSG00000097766	5730420D15Rik	-	RIKEN cDNA 5730420D15 gene	ncRNA	4.96072942495154	5.3544547973255	4.88417966565835	5.1001089450914	5.29961616976678	5.21007840050001	5.42622524294161	5.13333855741767	0.333880869636863	0.279122498906157	0.591352214472761
Merged-chr2-119799573-6	chr2	119799514	119799714	+	847.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019392)	promoter-TSS (NM_019392)	100.0	NM_019392	22174.0	Mm.2901	NM_019392	ENSMUSG00000027298	Tyro3	AI323366|Brt|Dtk|Etk-2|Rse|Sky|TK19-2|Tif|etk2/tyro3|tk19-1	TYRO3 protein tyrosine kinase 3	protein-coding	3.13694492042213	3.29307304925779	3.31871443598852	2.95564147980332	3.28748212292282	3.37511707996368	3.18907795257222	3.61677721437091	0.737413591282144	0.183502786062913	0.480543562392038
Merged-chr3-51289313-3	chr3	51289211	51289411	+	910.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 4 of 9)	intron (NM_023502, intron 4 of 9)	-11797.0	NM_001291062	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	3.74455235416841	3.84594288604834	3.46218988749342	3.72648320264559	3.55125206009617	3.8642506821783	3.67836861716322	3.84060835956257	0.0835349561350185	0.860640984332741	0.947307971976746
Merged-chr5-30888998-4	chr5	30888897	30889097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001294262)	promoter-TSS (NM_001294262)	-9.0	NM_001048192	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	5.16342894782385	4.89832083644878	5.22280270140537	4.69276547878001	4.83016708845972	5.305606616842	4.72008596766461	4.96716549009319	-0.0537016895433068	0.879378328478271	0.954842749021429
Merged-chr19-14585476-4	chr19	14585381	14585581	+	984.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302951, intron 4 of 19)	intron (NM_001302951, intron 4 of 19)	11732.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	4.71209874639723	4.97765790997624	5.02447589505286	5.08973424261545	5.24594465884849	5.09212812817014	5.38188332354992	5.12079167789542	0.46606995402417	0.136250384212898	0.410690032931242
Merged-chr6-53759769-4	chr6	53759673	53759873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Eulor8|DNA|TcMar?	61052.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	5.43295762511186	5.26517264559017	5.52125997468769	5.56132136457517	5.74551322603621	5.80338572956365	5.89648576065921	5.65072899529815	0.533429749611302	0.0447801395316557	0.216197894032675
Merged-chr16-29454972-4	chr16	29454859	29455059	+	963.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172613, intron 11 of 29)	intron (NM_172613, intron 11 of 29)	-76227.0	NM_175650	268878.0	Mm.9823	NM_175650	ENSMUSG00000048939	Atp13a5	C630015F21Rik	ATPase type 13A5	protein-coding	5.06409317757631	4.83370944592211	4.83048274314882	5.33071858744475	4.77072314486693	4.52950818917126	4.77052869342764	4.62893168266276	-0.745045396358774	0.0350711722089541	0.185521788714748
Merged-chr15-3259742-1	chr15	3259642	3259842	+	688.0	f0_balb.idr	Intergenic	Intergenic	-11025.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	3.23965931949156	3.12282439089368	3.44655906900595	3.23391701182205	2.86468341635335	3.0336509761026	3.11170336916211	3.29307598318488	-0.725552400324163	0.215330285932604	0.521432755745963
Merged-chr18-26864975-4	chr18	26864862	26865062	+	839.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1110805.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	3.6354690520771	3.4561711133507	4.03399655537477	3.51434390716462	3.96852990683728	3.86812680605177	3.92781053237475	3.94299588844116	0.76048159638614	0.106825285162025	0.360416977416115
Merged-chr3-89831369-5	chr3	89831230	89831430	+	773.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172530)	promoter-TSS (NM_172530)	-40.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	3.19637176555994	3.27609114904168	3.46370794613073	2.80544953461619	3.36967697829129	2.97159953323371	2.996348262312	3.41250010066813	0.00825364465704036	0.98953886688993	0.995792385431747
Merged-chr17-24140996-3	chr17	24140916	24141116	+	851.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286662, intron 1 of 13)	intron (NM_001286662, intron 1 of 13)	578.0	NM_011062	18607.0	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	3.48227022059277	3.80480838812368	3.48269619291632	3.72879871013066	3.6305568528914	3.82104844324019	3.63681318801493	3.64935892311567	0.128285735536517	0.789549614496354	0.918515153062961
Merged-chr5-43782196-7	chr5	43782109	43782309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159963)	promoter-TSS (NM_001159963)	-60.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	6.20934398565559	6.21124609499681	6.10817075469387	5.36275094251191	6.58177213885364	6.55140866543522	6.40988321490491	6.42199173274256	0.752257647084805	0.00737998068946217	0.0632814896392275
Merged-chr13-91656815-4	chr13	91656705	91656905	+	782.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360775, intron 5 of 16)	intron (NM_001360775, intron 5 of 16)	-84716.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	4.85500778816398	4.21029576801816	4.66493907148922	4.73043285354	3.88663245274189	4.12951214903433	4.24399875449017	4.16235778846111	-1.29364240291636	0.00207910261253133	0.0240984277572655
Merged-chr15-83096116-3	chr15	83096013	83096213	+	655.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4092.0	NM_023475	68607.0	Mm.30056	NM_023475	ENSMUSG00000058586	Serhl	0610008B10Rik|1110019M09Rik|AU019786	serine hydrolase-like	protein-coding	3.56185251407088	3.37908375017283	3.29166770960795	3.26668234302336	3.42745232451185	3.40383641775759	3.39388222284559	3.40521745660585	0.128383557133	0.801398672143348	0.923365533732052
Merged-chr7-3816650-1	chr7	3816550	3816750	+	837.0	f0_c57.idr	intron (NM_001289428, intron 11 of 12)	intron (NM_001289428, intron 11 of 12)	28401.0	NM_011089	18725.0	Mm.482470	NM_011089	ENSMUSG00000089942	Pira2	6M23	paired-Ig-like receptor A2	protein-coding	2.68273180840181	2.68342113942013	2.60076737770218	2.79984732131101	2.87168021208677	3.02034390895174	3.39566793757887	3.73636467745661	2.44779346553048	0.000720384381440469	0.010367213887293
Merged-chr15-25972931-4	chr15	25972852	25973052	+	942.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001277318, exon 7 of 7)	3' UTR (NM_001277318, exon 7 of 7)	-11414.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	4.66000059804679	4.50030543631138	4.77588467945583	4.91685680075915	4.66541595948496	4.71009236343124	4.75329910948767	4.97438736712056	0.0874931790521826	0.802906240122102	0.923936032101707
Merged-chr9-20645345-4	chr9	20645219	20645419	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286530)	promoter-TSS (NM_001286530)	516.0	NR_153859	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	4.0826073703981	4.28759454137897	4.13349858662923	4.30581893031746	4.39445472622485	4.20655918054462	4.49623357053976	4.51441296946541	0.464888729797386	0.230893018302929	0.540396396919272
Merged-chr1-82946130-2	chr1	82946030	82946230	+	890.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92318.0	NM_030556	80721.0	Mm.261542	NM_030556	ENSMUSG00000038496	Slc19a3	A230084E24Rik|AI788884|ThTr2	solute carrier family 19, member 3	protein-coding	2.56662422925817	2.57021633069468	2.5669868446626	2.18020690422129	2.24325225027717	2.32963574898188	2.36596227741538	2.37244548605337	-0.882235757710738	0.24897911031401	0.560207151982062
Merged-chr11-97718545-4	chr11	97718438	97718638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_054051, exon 10 of 10)	3' UTR (NM_054051, exon 10 of 10)	15104.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	5.83836013979683	6.56199490189989	6.50046640647906	6.2245695119214	5.91810304596402	5.99233904661142	6.01974448847831	6.00238899339138	-0.508403949313158	0.0506109281436642	0.233296839112781
Merged-chr7-24237588-3	chr7	24237468	24237668	+	772.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020262)	promoter-TSS (NM_020262)	30.0	NM_020262	56869.0	Mm.103751	NM_020262	ENSMUSG00000074283	Zfp109	-	zinc finger protein 109	protein-coding	3.91650254962955	3.58249856707337	4.04669889289214	3.73460512494029	3.63592782899004	3.53999004257956	3.70556378152644	3.86838110145361	-0.395441328572787	0.409640681867973	0.705214871926678
Merged-chr9-99436536-4	chr9	99436440	99436640	+	949.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008624, exon 1 of 6)	5' UTR (NM_008624, exon 1 of 6)	172.0	NM_008624	17532.0	Mm.2045	NM_008624	ENSMUSG00000032470	Mras	2900078C09Rik|AI326250	muscle and microspikes RAS	protein-coding	5.1255118987631	4.7743367379423	5.15651148525406	4.91322311641931	4.99927261583516	4.69394196461186	4.97385071581212	5.06040468486086	-0.0943505021867852	0.773697374593895	0.911560324200001
Merged-chr9-64341114-4	chr9	64341024	64341224	+	953.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177784)	promoter-TSS (NM_001177784)	133.0	NM_001001295	213550.0	Mm.268341	NM_172519	ENSMUSG00000032396	Dis3l	AV340375	DIS3 like exosome 3'-5' exoribonuclease	protein-coding	4.67373306691051	4.76729842752174	4.71116094963918	4.49629458912493	4.42692633720065	4.46615062042615	4.05394811622353	4.90765453501739	-0.357362398469615	0.373955302011958	0.677365748216336
Merged-chr1-91259987-3	chr1	91259893	91260093	+	981.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355764, intron 3 of 10)	URR1A|DNA|hAT-Charlie	9427.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	3.27475231377587	3.61277311406901	3.51707009937276	3.85158825163048	3.27482351978087	3.57551341177669	3.6080702519673	3.62097567836297	-0.231871874105479	0.665080867878985	0.861240218581299
Merged-chr9-48282694-2	chr9	48282599	48282799	+	922.9166869999999	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	58199.0	NM_030069	78252.0	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	2.78493567659382	2.85932756956353	2.78519717344488	2.3055556849028	3.68732188505194	3.65503979098929	3.87118653797024	3.9661296983028	6.52881127011386	2.25460540316506e-13	2.73857607494685e-11
Merged-chr11-76884722-3	chr11	76884623	76884823	+	894.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21B|LTR|ERVL	-19822.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	4.5997138324893	4.60035674315367	4.66961795756074	4.61709790830935	3.67822100500215	4.03778295243743	3.95514253984002	4.32069130840999	-1.54809506881516	0.00029858794613089	0.00505537526777831
Merged-chr7-25784277-4	chr7	25784193	25784393	+	945.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 4 of 19)	intron (NM_009465, intron 4 of 19)	4440.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	4.54419551809236	4.61099708096362	4.99152792470852	5.02319221136296	4.80532181045442	4.37684864709199	5.02755475045379	4.74715960157757	-0.118190899676682	0.753223280378425	0.902784782428072
Merged-chr2-143063034-4	chr2	143062944	143063144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021335)	promoter-TSS (NM_021335)	-25.0	NM_021335	20639.0	Mm.1323	NM_021335	ENSMUSG00000008333	Snrpb2	2810052G09Rik	U2 small nuclear ribonucleoprotein B	protein-coding	6.65142548573084	6.59211287438693	6.68320850754157	6.68751396764866	6.77743520681459	6.81351453434742	6.95477852224177	6.60052943529915	0.194438709236398	0.335666681355088	0.645927430703489
Merged-chr5-66038415-4	chr5	66038329	66038529	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 3 of 6)	intron (NM_139065, intron 3 of 6)	-34144.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	5.25457938046558	5.75822118598303	5.60325324248742	5.4757466939667	5.609341724699	5.21963691887461	5.49707970502003	5.52095856445611	-0.0991864432075522	0.731290308130817	0.893544011440303
Merged-chr2-32287565-2	chr2	32287465	32287665	+	722.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133852)	promoter-TSS (NM_133852)	504.0	NR_110965	72931.0	Mm.27344	NM_175190	ENSMUSG00000044627	Swi5	1500019F05Rik|2900010J23Rik|AI046671	SWI5 recombination repair homolog (yeast)	protein-coding	3.18787762186544	3.1663460664418	3.44938791787852	2.62730847984179	2.99963317963558	2.97435761899909	2.92471852710021	3.4470987309284	-0.1494489855722	0.823798946179609	0.932402068800701
Merged-chr14-51884873-5	chr14	51884842	51885042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029990)	promoter-TSS (NM_001029990)	100.0	NM_001029990	52535.0	Mm.5750	NM_001029990	ENSMUSG00000004561	Mettl17	2310032K15Rik|D14Ertd209e|Mett11d1	methyltransferase like 17	protein-coding	7.62978051815391	7.72117637397726	7.33218184375722	7.74350740930158	7.46807257447306	7.32843067956135	7.45349659146492	7.27358496777899	-0.316863292208459	0.0882752354012893	0.324134278082454
Merged-chr16-21728070-4	chr16	21727974	21728174	+	908.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33409.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	4.79266856559156	4.33829677933982	4.5706274544941	4.39832178397673	4.81526626281127	4.74350326026764	4.37776176297868	4.64628829945906	0.299368444243233	0.420796766977998	0.713566714326837
Merged-chr18-4971013-4	chr18	4970930	4971130	+	890.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75559.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	3.72479355791012	3.64510193295777	3.78155761613366	4.1548485479011	4.06917705446984	3.59047835815875	4.14144746617099	4.27500776473979	0.504015881902707	0.312045463983693	0.623941909121166
Merged-chr9-25152761-4	chr9	25152669	25152869	+	732.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020586)	promoter-TSS (NM_020586)	-988.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	3.39780360716478	3.71019994973417	3.7809902820855	3.44230389489738	3.90187102082383	3.80131528873366	3.44784523615002	3.51762572515332	0.311161128355295	0.539448332440051	0.792188835460087
Merged-chr14-17912937-3	chr14	17912838	17913038	+	645.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-68706.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	3.29578418386495	3.08028084517095	3.46526901674517	3.68974298317076	3.48579780546782	3.40820125302201	3.39819027418578	3.35331269771357	-0.00827515350523669	0.988140315658771	0.995370064932717
Merged-chr13-19690212-4	chr13	19690108	19690308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181591, exon 7 of 17)	exon (NM_181591, exon 7 of 17)	7552.0	NM_001167909	73412.0	Mm.279939	NM_181591	ENSMUSG00000041138	Nme8	1700056P15Rik|Sptrx-2|Txndc3	NME/NM23 family member 8	protein-coding	6.42080387278122	6.23862509914509	6.01370547597993	6.1337442047379	6.5635882238659	6.3402771643392	6.13296198424513	6.3134801537529	0.228314375657453	0.336550862574036	0.646503344271765
Merged-chr2-11332660-4	chr2	11332556	11332756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6833.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	6.49291601159402	6.60155199927444	6.77143258380277	7.00205583517298	6.43114536204887	6.29531603695243	6.6366913531791	6.83384404750818	-0.260731837392511	0.274967907192726	0.58673095357303
Merged-chr11-101087295-4	chr11	101087182	101087382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011550)	promoter-TSS (NM_011550)	-8.0	NM_011550	21428.0	Mm.628	NM_011550	ENSMUSG00000017801	Mlx	Tcfl4|Tf4|bHLHd13	MAX-like protein X	protein-coding	6.11795042118215	6.14778059992021	5.50667557230687	6.11192008321266	6.52734617929454	6.12238604841453	6.27447181547949	5.91787535215258	0.361125831188337	0.193542379883696	0.493731393226286
Merged-chr4-67478712-1	chr4	67478612	67478812	+	947.5	f0_balb.idr	Intergenic	MIR3|SINE|MIR	651161.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	3.66221002535676	3.55623237633476	4.27060488850664	4.29189852997165	2.81770467334343	3.21015816858465	3.22863846228202	3.08993794172989	-3.69392650581747	7.00477496408667e-07	2.5270799653762e-05
Merged-chr3-38235587-3	chr3	38235480	38235680	+	685.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27461.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	3.16178918823995	3.22749826430241	3.21646866255233	3.2373699027232	2.94962376225499	2.88361860958045	3.0939540870954	2.77711058669391	-1.1895524153189	0.0490879644646065	0.229026758168997
Merged-chr11-17280143-4	chr11	17280079	17280279	+	883.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	22491.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	3.47531681239209	3.58476141187483	4.46858910824266	3.74927873127035	3.77173613422411	3.78556276607857	3.76153827192006	4.1061787880221	-0.0389962316569215	0.942067060531481	0.979058454594117
Merged-chr13-110373035-2	chr13	110372924	110373124	+	818.25	f0_balb.idr|f0_c57.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-15852.0	NM_177713	238875.0	Mm.30533	NM_177713	ENSMUSG00000046006	Gapt	9830130M13Rik	Grb2-binding adaptor, transmembrane	protein-coding	4.38757502807738	3.89888464662559	3.99437693532976	4.24277629096426	4.35681762854683	4.60201748614775	4.56265281413442	4.71931723911965	0.961427120206437	0.0170902504128648	0.114999710166128
Merged-chr4-132753139-2	chr4	132753036	132753236	+	932.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_133888, intron 1 of 7)	intron (NM_133888, intron 1 of 7)	4035.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	2.85427393340299	3.12814124086054	2.91567418001983	2.41730864831909	3.02342049411055	2.75969980049307	2.71488192945219	2.78929079097995	-0.111703639217489	0.874644933855163	0.952925927223413
Merged-chr9-92457466-3	chr9	92457355	92457555	+	928.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178711)	promoter-TSS (NM_178711)	77.0	NM_178711	235527.0	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding	3.57017491876514	3.42378537445636	3.52181522032411	3.89186052487301	2.8839544445	3.00509387598401	3.10522095957912	3.24297832301416	-2.25300695339477	0.000291843753364267	0.00496252903027118
Merged-chr8-46936152-4	chr8	46935972	46936172	+	878.034058	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50815.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	3.52332220262901	3.1966931609526	3.30990995039895	3.1190069372333	3.30209422169164	3.63861543745539	3.23893004356855	3.36510032307283	0.384054446030033	0.479142169218856	0.754933160590334
Merged-chr12-105684104-4	chr12	105684011	105684211	+	942.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029654, intron 1 of 41)	intron (NM_029654, intron 1 of 41)	1130.0	NM_029654	76559.0	Mm.114362	NM_029654	ENSMUSG00000041341	Atg2b	2410024A21Rik|AI047755|AI503411|AW558123|C030004M05Rik|C630028L02Rik|mKIAA4067	autophagy related 2B	protein-coding	4.57859857141723	4.77591025684721	4.08796865369837	4.36241016744904	4.48883093072631	4.36901559714459	4.35913651024358	4.18976378629442	-0.263337265555991	0.51708244461528	0.778652850195737
Merged-chr14-70604666-4	chr14	70604585	70604785	+	840.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001252663, exon 14 of 14)	3' UTR (NM_001252663, exon 14 of 14)	-4850.0	NM_194345	239170.0	Mm.247582	NM_194345	ENSMUSG00000022095	Fam160b2	G430067P06Rik|Rai16	family with sequence similarity 160, member B2	protein-coding	3.84973910423838	3.80324829021015	4.5611674968988	3.99799754359753	3.73664506015663	3.9162066183136	3.99057057575085	4.38726957276779	-0.151166714294059	0.75856954960185	0.905219520105318
Merged-chr18-53246625-4	chr18	53246512	53246712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	950.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	7.28247780030558	7.39813997256678	7.72928531697244	7.2880651040259	6.812559983204	6.3822257356235	6.7461719072786	6.72990879548986	-1.02964147096358	1.98419507957163e-06	6.49944876064561e-05
Merged-chr2-167319191-4	chr2	167319098	167319298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	29980.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	7.92209777562833	8.14663853202627	7.83492730441929	8.00095122283659	7.94749030150423	7.91725121639246	7.86381264073433	7.84481858109768	-0.11538309669655	0.480831873994691	0.756163685244129
Merged-chr15-91301554-4	chr15	91301433	91301633	+	745.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033633, intron 7 of 9)	B3|SINE|B2	-109526.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	3.75361438678929	3.81047450664155	3.81010364321162	4.10219446867221	3.90382283827906	3.98490880974187	4.1272693740829	4.22502949210329	0.453273765713671	0.311234652499839	0.62324859559111
Merged-chr14-54476087-4	chr14	54475988	54476188	+	816.895813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080726)	promoter-TSS (NM_080726)	-12.0	NM_080726	140743.0	Mm.274727	NM_080726	ENSMUSG00000022176	Rem2	AW411893	rad and gem related GTP binding protein 2	protein-coding	4.1378850483529	4.31599117758255	4.40336077790618	3.8380277921108	4.33847257975086	4.61174884479744	4.25836052942933	3.98047745845556	0.334067155883515	0.444124113352201	0.730548859870038
Merged-chr8-111061793-4	chr8	111061666	111061866	+	855.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5427.0	NM_028274	72544.0	Mm.24174	NM_028274	ENSMUSG00000109941	Exosc6	2610510N21Rik|C76919|Mtr3	exosome component 6	protein-coding	3.27625091344862	3.22195690752246	3.54911939012164	3.47606201726603	3.44202818843773	3.1183728815401	3.20386676952945	3.68576897303264	-0.0201786490996959	0.971225667473572	0.989661202321986
Merged-chr11-69945403-4	chr11	69945273	69945473	+	847.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009204, exon 7 of 11)	exon (NM_009204, exon 7 of 11)	2817.0	NM_009204	20528.0	Mm.10661	NM_009204	ENSMUSG00000018566	Slc2a4	GT2|Glut-4|Glut4|twgy	solute carrier family 2 (facilitated glucose transporter), member 4	protein-coding	3.93962122516642	3.99615282898198	4.03770549260147	3.78106834558619	4.00166596749382	4.16136149437216	4.06577120760543	4.03525788442335	0.363757585652663	0.38526907714856	0.686692566479463
Merged-chr8-119839793-4	chr8	119839709	119839909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	770.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	5.78829794948699	6.64069848123241	6.15057739116031	6.47894903765785	7.07056607587987	6.8698166589117	7.07801766988089	6.80089202249724	0.919872972305988	0.000317742094751701	0.00531045936183984
Merged-chr4-132794224-4	chr4	132794116	132794316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033308, intron 1 of 5)	intron (NM_001033308, intron 1 of 5)	2148.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	7.20871513409932	7.46437513887909	7.28478303159887	7.32305954112412	7.25552523670727	6.86337374511342	6.93249742697614	7.2692870515535	-0.30482993642055	0.124956164836779	0.392318594544445
Merged-chr15-84072363-4	chr15	84072262	84072462	+	894.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7013.0	NM_029946	77627.0	Mm.196288	NM_029946	ENSMUSG00000022441	Efcab6	4931407K02Rik|4932408N08Rik|bM150J22.2|mKIAA1672	EF-hand calcium binding domain 6	protein-coding	4.32623504488288	4.83358184616684	4.32687928180931	4.68490259931738	4.32563808111056	4.40678561720494	4.56650228719996	4.89668406031878	-0.0185827666479564	0.962887312676297	0.986716902231301
Merged-chr19-46837464-3	chr19	46837353	46837553	+	843.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102471, intron 1 of 6)	intron (NM_001102471, intron 1 of 6)	75844.0	NM_001102471	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	4.33799625058176	4.48717558682876	4.49768025599939	4.5630455301617	3.77178020907758	4.28373194778254	4.23213862035391	3.94388283729118	-1.04558623449805	0.012781788431945	0.094025932079104
Merged-chr9-13835463-4	chr9	13835372	13835572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176836, intron 5 of 9)	intron (NM_176836, intron 5 of 9)	7756.0	NM_176836	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	7.0789754023486	6.91013289989274	7.14964272007328	7.71391652588167	7.06063162324285	6.62417559835501	7.008423342932	6.96333606451601	-0.462203307232649	0.0606022998651762	0.260075431213275
Merged-chr9-25318293-2	chr9	25318193	25318393	+	671.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65401.0	NM_001359738	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	2.88960770145974	2.97181112005794	2.88991280969499	2.95518345152154	3.08681301692779	3.06451027984091	3.06664968758948	3.33903478150471	0.868720907042786	0.129421555564145	0.400360889731452
Merged-chr10-95416854-4	chr10	95416765	95416965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045338)	promoter-TSS (NR_045338)	-8.0	NM_007706	216233.0	Mm.474283	NM_007706	ENSMUSG00000020027	Socs2	8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|SOCS-2|SSI-2|hg	suppressor of cytokine signaling 2	protein-coding	6.07928572518802	6.38300815572603	6.35847001121091	6.23500316407714	6.55866267627883	6.44201454935195	6.1552100381666	6.45651494202707	0.222071193983069	0.331482872192881	0.642595786244724
Merged-chr7-98341576-4	chr7	98341484	98341684	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19704.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	5.16636462966268	5.14306092899872	4.72223249991309	4.68481941529622	5.31029174631984	5.30907523447352	5.20235542947609	5.28307487440616	0.652676416935623	0.0413754882024749	0.205991877650134
Merged-chr13-3807073-4	chr13	3806920	3807120	+	749.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2702.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	3.30752131846205	3.44066447144744	3.4798916313698	3.08549376001872	3.47263630250061	3.59632227784287	3.51764104006271	3.4231738235969	0.618139491971078	0.234422124774012	0.544313567747168
Merged-chr10-85970070-4	chr10	85969965	85970165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177772, intron 12 of 15)	intron (NM_177772, intron 12 of 15)	-12272.0	NM_145422	28088.0	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	6.21785962640619	6.47538750784354	6.31431015741566	6.24974810122233	6.31893350466459	6.48984644077156	6.46834284766856	5.9515281275263	0.0103828737734675	0.965140562117283	0.98769425730755
Merged-chr1-171579742-1	chr1	171579642	171579842	+	639.0	f0_balb.idr	intron (NM_018729, intron 6 of 8)	intron (NM_018729, intron 6 of 8)	20549.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	2.89559400122637	2.99501977288473	2.89594898864952	3.10659512388946	2.6188680125954	2.73083964639837	2.88568411706492	2.89451332319049	-0.927187226103087	0.14702870043673	0.42775099601022
Merged-chr4-32565176-4	chr4	32565083	32565283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 3 of 4)	intron (NM_001109661, intron 3 of 4)	6479.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	6.67612880035743	6.50390805416354	6.74699777613187	6.36553173592336	6.5091348003512	6.35049301444155	6.59965089139054	6.03271636509333	-0.255667962334084	0.286387451896458	0.598054698348964
Merged-chr12-102469089-4	chr12	102468977	102469177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199004)	promoter-TSS (NM_001199004)	-57.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	8.73045989993466	8.64909690586706	8.49562571413824	8.65915903179583	8.8476710773057	9.10827935726853	8.94759691849634	8.76388250268076	0.355590149139935	0.0215530026265733	0.134514771459137
Merged-chr5-31908202-3	chr5	31908099	31908299	+	898.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 7 of 11)	intron (NM_144541, intron 7 of 11)	210149.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	4.1505268601127	4.02224140501741	4.32014260135769	4.10131917939528	3.93313957451229	4.27650278051135	4.04017909343681	4.0055243256019	-0.221013316003068	0.595429374042432	0.823928680864058
Merged-chr2-6096527-3	chr2	6096409	6096609	+	619.277771	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	33676.0	NM_144883	227545.0	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	3.75039417730875	4.21624413739284	4.04556993366871	3.80439013773555	3.9735939639855	3.69206633292675	4.02731549916711	3.50828055130415	-0.396892571270489	0.416005436811342	0.710072021761014
Merged-chr4-3786878-3	chr4	3786770	3786970	+	889.6555789999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 12 of 12)	intron (NM_001111096, intron 12 of 12)	48785.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	3.55438505776101	3.60812649103599	3.49855443463166	3.67844409826474	3.41207392219593	3.554211643949	3.69462937041525	3.75599830364517	0.0375183952964753	0.938598585264104	0.977759950372676
Merged-chr12-69962618-1	chr12	69962518	69962718	+	554.0	f0_balb.idr	promoter-TSS (NR_036607)	promoter-TSS (NR_036607)	-791.0	NR_036607	100040999.0	Mm.394588	NR_036607	ENSMUSG00000079076	Gm3086	-	RuvB-like protein 1 pseudogene	pseudo	2.95086578152798	2.85641329756993	3.01006766119227	3.03556895208847	3.16088106267402	2.86095134984006	2.81636316249988	2.88822844594518	-0.0852420017297368	0.888970954556585	0.958420116257639
Merged-chr8-106603332-3	chr8	106603244	106603444	+	627.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009864)	promoter-TSS (NM_009864)	-6.0	NM_009864	12550.0	Mm.35605	NM_009864	ENSMUSG00000000303	Cdh1	AA960649|ARC-1|E-cad|Ecad|L-CAM|UVO|Um	cadherin 1	protein-coding	3.05069258566429	3.11958868627404	2.93433226576026	2.82098418682666	2.84481553002192	2.84252120324343	2.86220665895539	2.9328713026522	-0.487915456693318	0.422680342992805	0.714868700610295
Merged-chr12-35026146-4	chr12	35026049	35026249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21040.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	6.228986755137	6.30951368153243	6.30482082458555	6.68375513730935	6.35881103825219	5.86723221158387	6.15929948031008	5.94702336434172	-0.454184509563605	0.0772638075506632	0.300620999106191
Merged-chr11-19972604-4	chr11	19972520	19972720	+	816.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	48178.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	4.21712615126206	4.87280226838911	4.1696100385666	3.89059336014092	4.32459719988112	4.29741497353357	4.45288069131271	4.06532930332644	-0.111204380971974	0.809925081908816	0.92673441581447
Merged-chr14-29978459-4	chr14	29978424	29978624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027493, exon 1 of 13)	exon (NM_027493, exon 1 of 13)	187.0	NM_027493	56249.0	Mm.215110	NM_027493	ENSMUSG00000015971	Actr8	5730542K05Rik|ARP8	ARP8 actin-related protein 8	protein-coding	6.03989057399359	6.00105022325074	6.3974748283384	5.85440536081285	5.82048268226266	5.89040130414496	5.62974911495524	5.88329785723165	-0.423554295420466	0.107355953925629	0.361382260156614
Merged-chr2-49276217-4	chr2	49276110	49276310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290656, intron 6 of 9)	intron (NM_001290656, intron 6 of 9)	30310.0	NM_001290656	109241.0	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630	methyl-CpG binding domain protein 5	protein-coding	5.52271801826188	5.26695486347241	5.77310368111006	5.9655207339297	5.3848623699505	5.24655772678072	5.57549808785643	5.6751602300657	-0.330926231292983	0.282338604510518	0.594517682403819
Merged-chr14-46884242-4	chr14	46884130	46884330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 1 of 12)	CpG	1265.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	5.50635156017833	5.52209981613374	5.67195634548238	5.74226486394502	5.93585472600499	5.82094833559105	5.78806106677172	5.69341568397427	0.317831790652517	0.218645146419867	0.525920308403926
Merged-chr1-180771934-4	chr1	180771847	180772047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41658.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	5.96158908249264	6.09843438563021	5.40766492362226	5.39969389180304	5.8815623545991	5.7052219168876	5.68627765258836	5.40391756971529	-0.101657209101755	0.744490531641556	0.899296531468148
Merged-chr10-63381749-3	chr10	63381656	63381856	+	876.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253685)	promoter-TSS (NM_001253685)	-687.0	NM_001253685	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	3.89833849076483	3.65317189807012	3.54376329774289	3.57967949790094	3.41674282100319	3.60115173495411	3.53037705255575	4.0616696807257	0.00563398064598189	0.991203517856869	0.996682766725531
Merged-chr14-33216526-4	chr14	33216420	33216620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153800)	promoter-TSS (NM_153800)	-303.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	5.56319973621943	5.53866975592119	5.94151918767845	5.99614009745958	5.72561370051811	5.36404877617568	5.36089900676551	5.66563940414543	-0.400321102654317	0.168234592618966	0.460191392541484
Merged-chr16-43109523-4	chr16	43109416	43109616	+	840.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285805, intron 2 of 10)	Lx3B|LINE|L1	-137768.0	NM_181058	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	4.61999276318751	4.76742223308294	4.82627044924367	4.78054886936065	4.26121692856392	4.01640568849999	4.31014025742688	4.1785136993533	-1.28772733633853	0.000770922732702076	0.010922274918591
Merged-chr10-98781145-4	chr10	98781060	98781260	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133482.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	6.15667163992477	6.29027275048453	5.97877855072039	5.74523063117766	5.95191870018723	5.86935301946311	5.68958835966097	5.4212643076786	-0.469722932733382	0.0963515466378274	0.340107485696223
Merged-chr7-71872507-3	chr7	71872411	71872611	+	923.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37184.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	4.68909656749333	5.06408054001871	5.41547827042616	5.29319654433482	3.93831281795513	3.88156961624522	3.8073060165296	4.01654404889248	-3.01888037754182	4.4065994119896e-11	3.56834288448245e-09
Merged-chr11-115142173-4	chr11	115142055	115142255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	-8163.0	NM_145634	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	6.44882265140339	6.29783491997069	6.22756698395233	6.40818494896078	5.94744891170948	5.90855992132678	5.75408531836842	5.97575137800532	-0.698079874687124	0.00272477859511467	0.0296237995450843
Merged-chr1-172342814-2	chr1	172342720	172342920	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	1610.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	3.09643483438723	2.99598451912333	3.37068586591637	3.09383456911418	3.12898682380539	3.26780800773126	3.0858458288465	3.03287945826482	-0.0441658420840502	0.937854890460087	0.977460307804652
Merged-chr19-8880921-4	chr19	8880825	8881025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160356)	promoter-TSS (NM_001160356)	8.0	NM_001160356	107197.0	Mm.381181	NM_001160356	ENSMUSG00000071654	Uqcc3	AI462493|Cbp4	ubiquinol-cytochrome c reductase complex assembly factor 3	protein-coding	6.21019523572415	5.95028941216934	5.90320421790771	5.9685891094991	5.75182200136702	6.07901456375761	6.24981378631503	5.72484364790695	-0.0737221304806155	0.777726870586915	0.913351489281802
Merged-chr8-122912247-4	chr8	122912145	122912345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 3 of 12)	intron (NM_001081379, intron 3 of 12)	63871.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	5.89836912000678	5.7480086275065	5.80076534812654	5.89144795196714	6.44032740029563	6.29183370893487	6.38440821083657	5.79664934478659	0.652825214818752	0.010962625066665	0.084284613021036
Merged-chr8-84414409-3	chr8	84414306	84414506	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007578)	promoter-TSS (NM_007578)	-958.0	NM_001252060	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	7.05929037935052	7.31966814866807	6.81025661377898	7.05419170468708	3.90925555179745	4.33041312734693	4.49030358877716	4.44704637634874	-5.9725689511738	2.2056360182562e-32	3.2039789008869e-29
Merged-chr1-37419621-4	chr1	37419531	37419731	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198006, exon 3 of 3)	3' UTR (NM_198006, exon 3 of 3)	10472.0	NM_198006	76178.0	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	5.26370307392577	5.3219271369039	4.79058959117348	4.97405777511115	5.168782015193	5.60746198106934	5.38135900229229	5.40484813656438	0.533179834092982	0.0906069870810876	0.328744761619163
Merged-chr18-4352403-4	chr18	4352322	4352522	+	909.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 1 of 7)	intron (NM_007746, intron 1 of 7)	531.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	4.3732415001341	4.31061496851539	4.37391184781979	4.28435907639118	4.78378649024207	4.67343261637762	4.48124631619777	4.4578732491385	0.643959338129442	0.0759519324882767	0.297746467069617
Merged-chr13-37600381-4	chr13	37600278	37600478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-225660.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.07857041583505	6.54141729866147	6.71333237970314	6.37527548594654	6.20338323436162	6.49785824757707	6.15465441565479	6.09734731257142	-0.30137720452505	0.223333861855702	0.531369971937377
Merged-chr3-22076149-4	chr3	22076071	22076271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030732)	promoter-TSS (NM_030732)	-481.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	6.94763868965286	6.88949360704751	6.78429037404394	6.7737439025807	7.00983424951146	7.03203711891115	7.00041776307453	7.17740733332929	0.292759703637453	0.12250143470502	0.387908206631453
Merged-chr5-142931952-3	chr5	142931881	142932081	+	592.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25227.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	3.48768984151512	3.20646583627091	3.31596460077925	3.22478227359126	3.48031112386804	3.60489475033099	3.36321457520965	3.72960533276571	0.83158119843315	0.103707554227853	0.353924342061866
Merged-chr8-117282326-4	chr8	117282237	117282437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	25318.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	6.33617120835037	6.60253397496486	6.95203986152685	6.82157123160737	6.46026744855738	5.96118308184618	6.1867570610556	6.57264399296257	-0.554375993384294	0.0297759841432524	0.166420968940793
Merged-chr16-10461401-4	chr16	10461301	10461501	+	784.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14039.0	NM_001013778	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	4.15289105200893	4.10039491388549	4.47117579860464	4.31254196275814	3.935302840646	3.91204931517174	3.88979207078981	4.10502901043253	-0.805390490735563	0.0565639066649383	0.249082053483274
Merged-chr11-114929811-4	chr11	114929715	114929915	+	953.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199221, intron 1 of 3)	intron (NM_199221, intron 1 of 3)	4571.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	4.74746307927644	4.94966295676822	5.05132688175266	4.67328203486807	4.83826284909632	4.92149105154018	4.33250481221799	4.58331244172134	-0.338772015347119	0.356150162180089	0.662704502355483
Merged-chr3-96148153-4	chr3	96148045	96148245	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025613, intron 7 of 12)	intron (NM_001025613, intron 7 of 12)	-13825.0	NM_181409	194126.0	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	4.36127131706467	4.46974806537474	3.74316968479674	4.01409506676232	4.73148206682734	4.26470138797843	4.25769731342292	4.03418018690537	0.439787105101981	0.345552780505149	0.653873388015101
Merged-chr12-81591626-4	chr12	81591511	81591711	+	946.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347384, intron 1 of 7)	intron (NM_001347384, intron 1 of 7)	3397.0	NM_001347385	69792.0	Mm.279993	NM_027213	ENSMUSG00000002679	Med6	1500012F11Rik|AU019660|AV213303	mediator complex subunit 6	protein-coding	4.43547973349231	5.44468069898417	4.97620189584684	4.96438909093175	5.13131606145189	5.00774322208924	4.60606069268595	4.79072930665271	-0.199556107588529	0.609066223199775	0.83089280248568
Merged-chr5-86961984-4	chr5	86961902	86962102	+	945.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35499.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	4.59165428090446	4.85029473135354	4.81445440249703	4.73969719855506	4.54447262467333	4.72486715928813	4.40015480382125	4.32110454265044	-0.540400699116769	0.132615112691735	0.405594942907448
Merged-chr14-20733673-4	chr14	20733572	20733772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010811, intron 1 of 14)	intron (NM_010811, intron 1 of 14)	890.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	6.3364154296934	6.17452419048824	6.72863208042333	6.80565918365698	6.76382849635334	6.47640013160115	6.70819113855741	6.35195643955389	0.0617241952494931	0.805857577474135	0.925317663285668
Merged-chr18-9484669-4	chr18	9484569	9484769	+	970.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-34515.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	4.87051121086337	4.73020607009217	5.72069742342811	5.3633965750237	5.40831857279044	4.63999587976459	5.31191882020811	5.15536054691649	-0.123595957345594	0.754969584128564	0.903523774777845
Merged-chr10-45067736-2	chr10	45067636	45067836	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011156, intron 1 of 14)	intron (NM_011156, intron 1 of 14)	522.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	4.00935405360011	4.0841206570694	4.57626688081722	4.42240936795711	4.05483311437922	4.24077855555683	4.2831761838895	4.53759146784169	-0.0331365037205276	0.937890818885962	0.977460307804652
Merged-chr3-159839638-4	chr3	159839497	159839697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026582)	promoter-TSS (NM_026582)	-53.0	NM_026582	68151.0	Mm.6766	NM_026582	ENSMUSG00000028173	Wls	5031439A09Rik|AI173978|AI987742|EVI|Gpr177	wntless WNT ligand secretion mediator	protein-coding	5.25481823151632	5.33444169552907	5.13662423278759	5.21569931029681	4.95186711107299	4.87273650043286	4.7562278537463	4.81579301410186	-0.740061633377709	0.0174893215136397	0.116862642871557
Merged-chr9-94672788-4	chr9	94672700	94672900	+	848.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 1 of 15)	intron (NM_177909, intron 1 of 15)	2908.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	4.60875130789572	4.40504382325705	4.45574417383782	4.51776160212183	4.29085245713415	4.66662376569579	4.39399729014925	3.77342363845875	-0.424551108844464	0.32177353105203	0.633247915544561
Merged-chr17-34591581-4	chr17	34591440	34591640	+	832.037476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017463)	promoter-TSS (NM_017463)	-931.0	NM_017463	18515.0	Mm.390957	NM_017463	ENSMUSG00000034673	Pbx2	AU043397|G17	pre B cell leukemia homeobox 2	protein-coding	3.57130864910596	3.4431714912462	4.0721666273256	3.60961104578591	3.6349455477877	3.63172501241194	3.66337954784871	3.32628926424714	-0.370489733304311	0.476732486317634	0.753110052062842
Merged-chr7-29492080-4	chr7	29491977	29492177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081028, intron 2 of 22)	L1MC4|LINE|L1	13383.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	7.26973286722487	7.33746970763097	7.27097946315264	7.51067144624323	7.5631601995905	7.61137269612207	7.3689035709824	7.46745742464689	0.193854232103479	0.282687595766842	0.594868303890261
Merged-chr8-31168809-4	chr8	31168697	31168897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026453)	promoter-TSS (NM_026453)	-73.0	NM_026453	67920.0	Mm.289818	NM_026453	ENSMUSG00000031578	Mak16	2600016B03Rik|AI314911|Rbm13	MAK16 homolog	protein-coding	8.17556594147078	8.05091601019806	8.05135705715399	8.18092301346783	7.97136032595579	8.13993797153198	8.03259500350106	8.21831620534676	-0.0366622779492717	0.817714994360359	0.929981783742416
Merged-chr8-125596392-4	chr8	125596294	125596494	+	873.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015535, intron 2 of 2)	intron (NR_015535, intron 2 of 2)	11756.0	NR_015535	75930.0	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	4.40306830673012	4.21780676574382	4.4037655091372	4.1787313692918	4.41296149277131	4.83735177568695	4.25151705098983	4.2676098415663	0.387517246856572	0.329100311702078	0.64034309459959
Merged-chr4-149326020-4	chr4	149325920	149326120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8619.0	NR_131918	74310.0	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	5.42790502379836	6.07399942243088	5.60151428843977	5.52176043711472	5.61683603373898	5.82896479581247	5.59974290493058	5.67578020059976	0.000160715055776525	0.99955274649131	0.999768819585389
Merged-chr6-87027211-4	chr6	87027113	87027313	+	876.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020045, intron 7 of 7)	intron (NM_020045, intron 7 of 7)	-15633.0	NM_013528	14583.0	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	4.00704333026179	4.45462725470695	4.88365126185103	4.55790660832974	4.48827463635947	4.07452635098329	4.04697386001067	4.39613534259519	-0.558073946250757	0.208781326014383	0.513115323678537
Merged-chr10-59952507-3	chr10	59952385	59952585	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029083)	promoter-TSS (NM_029083)	-715.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	3.9520162128615	3.83316802190081	4.2133247753698	3.36852222380027	3.60857429507143	4.17179698121479	4.02696444567507	3.7971719464089	0.125377821490755	0.808735672983468	0.926138274128125
Merged-chr4-132780467-4	chr4	132780369	132780569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12109.0	NM_011284	19891.0	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	7.12514394166622	6.94781557666166	6.48842073714105	6.68636659178634	6.75983535577671	6.57508443369655	6.41956413173832	6.7953997897244	-0.255550316769337	0.275041357638026	0.586860789798314
Merged-chr17-83706626-8	chr17	83706458	83706658	+	930.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 1 of 16)	intron (NM_054082, intron 1 of 16)	395.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	3.85096234881864	3.99877620340221	3.90346732531749	3.83185801776515	3.7533839873712	4.3034882939015	3.98410823379078	3.95107815648621	0.300248851933723	0.497945233622639	0.767369095523206
Merged-chr18-36715945-4	chr18	36715836	36716036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	10879.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	7.29571406056388	7.0118832187851	7.40704003425351	7.30944251056049	6.45582024894956	6.2707160951251	6.64230983657333	6.41088737846534	-1.14050983991801	6.72327419876263e-08	2.99471798619352e-06
Merged-chr1-171466226-4	chr1	171466150	171466350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR73|LTR|ERV1	28689.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	5.65966355221173	5.8059004044578	5.73307616922659	5.42495183523319	5.40473608126969	5.21413116737456	5.72695630724042	5.5531977362858	-0.280557621352847	0.329882391625688	0.641233785393108
Merged-chr11-3387270-4	chr11	3387178	3387378	+	768.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010718, intron 2 of 15)	intron (NM_010718, intron 2 of 15)	-15874.0	NM_173053	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	3.8776757087959	3.85039891832261	3.60680565813149	3.59717173933505	3.90017429635028	3.84170104372969	4.08305950245122	3.92393726705688	0.603152831723371	0.176996831593287	0.472241452731785
Merged-chr1-169368963-4	chr1	169368855	169369055	+	924.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	162509.0	NM_023284	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	4.47580798289343	4.37846291858614	4.95344705403289	5.34663258286401	4.73597215738188	4.79079809773634	5.16792431911973	4.65264568267887	-0.0319901483708621	0.939357096331515	0.978065281293421
Merged-chr2-163765129-3	chr2	163765047	163765247	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-14908.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	6.30530988888176	6.50560517257551	6.35201683325556	6.65044594960417	4.57044807536063	4.46848249858555	4.59757451564533	4.31755524846643	-3.69666592357418	1.356994892431e-25	9.02705976152765e-23
Merged-chr2-154300706-4	chr2	154300586	154300786	+	963.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-6558.0	NM_001025574	433492.0	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838	BPI fold containing family B, member 9B	protein-coding	4.96492623630283	4.87624052287186	4.76223252507835	4.72975960830632	4.69152391221698	4.55857718299791	4.7026499066116	4.47167035293257	-0.456379135451269	0.185036784950553	0.482798142081944
Merged-chr1-88699605-4	chr1	88699509	88699709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177305, exon 1 of 1)	3' UTR (NM_177305, exon 1 of 1)	2582.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	5.27013138591273	5.60383278030456	5.29929265631739	4.94307844755289	4.99811554730231	4.54409663619632	4.95948388260283	4.94391644267	-0.788381169127813	0.0249031756846384	0.14807310517558
Merged-chr2-164359896-4	chr2	164359809	164360009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3402.0	NM_011414	20568.0	Mm.371583	NM_011414	ENSMUSG00000017002	Slpi	ALP	secretory leukocyte peptidase inhibitor	protein-coding	5.88750186039573	5.90729633669706	5.34248711386054	5.44897674564535	5.92925392873263	5.67153856287292	5.46781646172204	5.27230377917441	-0.0765780447422802	0.807059893799355	0.925590801284429
Merged-chr10-10556040-4	chr10	10555954	10556154	+	969.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	2153.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	5.42776458976097	5.27601449055523	5.04420406888414	5.53843524336968	5.42500548714797	4.98226994023287	5.48121588439255	5.55590405120647	0.0626140464528696	0.841323153539447	0.939660140370066
Merged-chr17-36865755-3	chr17	36865663	36865863	+	825.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177872, intron 2 of 6)	MTD|LTR|ERVL-MaLR	1424.0	NM_001024134	69097.0	Mm.307027	NM_001024134	ENSMUSG00000050747	Trim15	1810012B10Rik	tripartite motif-containing 15	protein-coding	3.17891490980429	3.06903475420805	3.3446369127848	3.724214224171	2.86008202798495	2.87765913155752	2.9121742556571	3.34264239619752	-1.37967900707644	0.0364137844423768	0.189772467396286
Merged-chr11-117825871-4	chr11	117825709	117825909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027827)	promoter-TSS (NM_027827)	-110.0	NM_027827	71562.0	Mm.273958	NM_027827	ENSMUSG00000017718	Afmid	9030621K19Rik|Ammd|FKF|KFA|Kf|formylase	arylformamidase	protein-coding	4.8552601046356	4.70565733070531	4.9588485180721	4.78904451611675	5.09809809977656	4.61854765642155	4.72206923760609	4.85281909281767	0.0511406587581325	0.880975891647086	0.955322489265647
Merged-chr2-150609391-4	chr2	150609303	150609503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027977)	promoter-TSS (NM_027977)	-836.0	NM_001356492	71881.0	Mm.26599	NM_027977	ENSMUSG00000033096	Apmap	2310001A20Rik|AI314817	adipocyte plasma membrane associated protein	protein-coding	5.52552118289365	5.26794039074963	5.21744830214281	5.32128731023757	5.1825709779577	5.18814172534113	5.12711944428208	5.335052144277	-0.231384774263745	0.425857340433135	0.717223493053412
Merged-chr8-83081847-4	chr8	83081692	83081892	+	866.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 6 of 6)	MTE2a|LTR|ERVL-MaLR	-83560.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	4.22103691166652	3.77603781815064	3.84266129854165	3.90901460472027	3.65338476300997	3.86030070257909	3.55710613614304	3.44164226863765	-0.924840504659346	0.0579959019745189	0.252871090935138
Merged-chr9-120083321-4	chr9	120083212	120083412	+	916.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-8821.0	NM_007720	12776.0	Mm.442098	NM_007720	ENSMUSG00000042262	Ccr8	C-C|C-C CKR-8|CC-CKR-8|CCR-8|CKR-8|Cmkbr8|mCCR8	chemokine (C-C motif) receptor 8	protein-coding	4.43263367167434	4.74228694049294	4.38783428733568	4.44090367595073	4.65229350364502	4.42063467297649	4.75984371431836	4.71010944481482	0.300909035667053	0.405613445782975	0.702341680428793
Merged-chr13-5859900-5	chr13	5859809	5860009	+	918.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1580.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	3.59726147466579	3.50417776260644	3.69637798729631	3.28071956676161	3.41589421363876	3.4260581484754	3.53112110057162	3.59568041378704	-0.0775928302033925	0.879062639754216	0.954746715269166
Merged-chr15-8167787-3	chr15	8167643	8167843	+	660.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV16_I-int|LTR|ERVK	-1363.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	3.61912312970323	3.29411082020029	3.41577022280132	3.41866600834477	3.14880200677536	3.41266637333006	3.16464600343163	3.74800755037518	-0.17716530700552	0.751241860154516	0.902050378109251
Merged-chr7-100443907-4	chr7	100443743	100443943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 27 of 32)	intron (NM_001017985, intron 27 of 32)	-29148.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	7.57451430948166	7.56560488963543	7.42369728440063	7.12143066780163	7.29151215712359	7.27592090495166	7.30835056952274	7.21158532944318	-0.201186100001364	0.303149344566262	0.615670331523426
Merged-chr5-143817209-4	chr5	143817098	143817298	+	657.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-54664.0	NM_013557	15467.0	Mm.389709	NM_013557	ENSMUSG00000029613	Eif2ak1	HCR|Hri	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding	3.20340118346774	3.48288910843346	3.51474576929189	3.428676195473	3.77853392312553	3.63076224489217	3.55466639193257	3.71700098386063	0.842396735675711	0.0869613538449768	0.321649459848867
Merged-chr1-144775480-1	chr1	144775380	144775580	+	720.333313	f0_balb.idr	promoter-TSS (NM_022881)	promoter-TSS (NM_022881)	-53.0	NM_022881	64214.0	Mm.253927	NM_022881	ENSMUSG00000026357	Rgs18	-	regulator of G-protein signaling 18	protein-coding	3.2936790501488	3.35683528876138	3.59260043311583	3.38623569145009	2.87091307148074	3.01474375867565	3.22458942652704	3.17517096344531	-1.33641620533247	0.022885796975527	0.139886258341865
Merged-chr10-51456638-4	chr10	51456537	51456737	+	954.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23975.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	5.29328954251111	5.04899392665818	5.1153881384968	5.46498234386929	5.22429679858184	4.64921623875947	4.92063083218758	4.78563773897449	-0.615781860048858	0.0727631930181818	0.290184408104054
Merged-chr14-58563300-4	chr14	58563209	58563409	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	490623.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	5.28366287183754	5.67291235505304	5.13510133781887	5.09663229280171	6.26616457433052	6.06982255629598	6.30303249235591	5.99589322705038	1.40952666242538	3.65392553000592e-07	1.39156107704811e-05
Merged-chr1-84286924-3	chr1	84286820	84287020	+	991.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2275.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	3.71706364984879	3.94007913583785	3.60740805802373	3.78061031800608	3.54226391931434	3.83619573310668	3.80291124230406	3.76716599902549	-0.105850368888301	0.820491272336818	0.931224559892568
Merged-chr2-143867484-4	chr2	143867480	143867680	+	978.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4407.0	NM_001291061	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	4.27255889875692	3.92309169446676	4.78737739143313	4.35546452756754	4.19566597048806	4.30641071731034	4.34084862228477	4.2244927578171	-0.242508621219414	0.571428334393795	0.810619894194694
Merged-chr11-121741098-4	chr11	121740997	121741197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38670.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	5.90538102882656	5.78906795620531	5.81146181385636	5.90675486607972	6.03410471050368	6.30906749933699	5.70630013779698	5.96896658540002	0.258214449757329	0.311303927515948	0.62332247252358
Merged-chr7-16925010-2	chr7	16924910	16925110	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007590)	promoter-TSS (NM_007590)	-978.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	3.58722330966509	3.30006315604675	3.64072277445365	3.18092941133151	3.70469142911888	3.46768350879918	3.67561890731858	3.95769211906566	0.918262661624622	0.0757790082807785	0.297425549933916
Merged-chr5-122108287-4	chr5	122108177	122108377	+	903.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289809, intron 11 of 11)	intron (NM_001289809, intron 11 of 11)	7326.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	4.50205592334465	4.84757537932916	4.42099350223336	4.20643818949507	4.24929468151293	4.09751649277547	4.59410427761422	4.28499181922097	-0.442437007676983	0.288985437851207	0.600943483035176
Merged-chr17-69397357-4	chr17	69397259	69397459	+	918.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13555.0	NM_009547	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	4.66826226067479	4.32579136967355	4.29695558302581	4.6824756562736	4.69963676435327	4.47261947083651	4.45551746957392	4.34140244243919	-0.0208773562822123	0.956639567366099	0.984720649427078
Merged-chr6-82772142-4	chr6	82772043	82772243	+	852.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	2311.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	3.97911237148823	4.14774980320993	3.93198662231607	4.12316609776446	3.73617714562519	3.84016059118263	3.9625097613289	3.59998012798898	-0.754403008756582	0.0925057429454351	0.332721363887815
Merged-chr6-124916060-4	chr6	124915954	124916154	+	864.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152158)	promoter-TSS (NR_152158)	-809.0	NR_152158	442825.0	Mm.446713	NR_152158	ENSMUSG00000055818	A230083G16Rik	-	RIKEN cDNA A230083G16 gene	ncRNA	5.03158944974526	4.42390006616829	4.84364360920579	4.81513108658415	4.64993358012606	4.71297752082913	4.42858385468931	4.49081709003013	-0.463489024603818	0.207431616181369	0.511447929091922
Merged-chr17-50071748-3	chr17	50071628	50071828	+	892.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 4 of 9)	ORR1D2|LTR|ERVL-MaLR	118769.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	4.51763003890108	4.62380003573477	4.41413196206667	4.2444213946193	3.53344769627307	3.39846030901152	3.7529760567575	3.50583230834571	-2.69040709052716	2.54644350948632e-07	1.00250720443433e-05
Merged-chr7-19370192-3	chr7	19370071	19370271	+	823.266663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001010836, exon 4 of 13)	exon (NM_001010836, exon 4 of 13)	8955.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	3.72743113209492	3.80514454041659	3.78077523919634	3.2364043696155	3.78161827706067	4.05111914233113	3.81498625269394	3.92494295149728	0.740255139470151	0.135198766803114	0.409349593042737
Merged-chr3-90266503-4	chr3	90266393	90266593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201407)	promoter-TSS (NM_201407)	-21.0	NM_201407	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	6.74841159227087	6.70319075544274	6.6599737471572	6.80528360944892	6.82099799073076	6.58144127341115	6.97366394491422	6.65523275472159	0.0507023296750805	0.80535999278321	0.925171083261684
Merged-chr11-34783844-4	chr11	34783726	34783926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033374)	promoter-TSS (NM_033374)	79.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	6.30852435834498	5.85720422305407	6.11042783989384	6.206105397717	5.82873625277107	5.73132714342927	5.84347332399176	5.82088510879284	-0.514888339653635	0.0384983305107397	0.196830388408558
Merged-chr9-41052241-2	chr9	41052132	41052332	+	584.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	B1_Mur1|SINE|Alu	27274.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	2.93311016204716	3.01524297521887	2.93342833796363	2.69858866967058	3.47415563699641	3.17660113705592	3.32894429818679	3.18171368265951	1.69246260669109	0.0035080306752597	0.0361305332707728
Merged-chr10-44777408-4	chr10	44777305	44777505	+	719.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-289809.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	3.4814336748025	3.80671849318349	3.54104805451731	3.5775680105924	3.9426414797903	3.4696044174129	3.40834327095732	4.01592064306459	0.411156773829173	0.427147786001068	0.718354140121047
Merged-chr4-140987726-4	chr4	140987632	140987832	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164366, intron 1 of 28)	intron (NM_001164366, intron 1 of 28)	859.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	4.23627692162271	3.70739747353031	4.35807820569728	4.14617859163012	4.13171101306296	3.96560812942024	3.88410157970843	4.39302210521178	-0.0536840447761137	0.906232245700669	0.965249151042661
Merged-chr2-84635806-4	chr2	84635707	84635907	+	897.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	13673.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	4.56132024012892	3.90769693433215	4.33771166367739	4.2358517060565	4.08862881032145	4.33534556024929	3.94351471255055	4.15971356316464	-0.349635882388591	0.416804648837957	0.710673328516556
Merged-chr3-66981267-4	chr3	66981177	66981377	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302359)	promoter-TSS (NM_001302359)	-136.0	NM_001302359	20429.0	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding	5.57682109859537	4.78839350249433	5.32661479549355	5.35284631473537	5.15152068943604	4.68161303890101	5.0566372675307	5.07796812680972	-0.524264202188704	0.131835801228301	0.404210211448674
Merged-chr6-115666847-4	chr6	115666747	115666947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029780, intron 1 of 16)	intron (NM_029780, intron 1 of 16)	9041.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	7.76584719666134	7.87825554336051	7.74361002597006	7.557922771553	7.72236881847061	8.03437627551018	7.37294000938174	7.65653134074414	-0.0264709513709451	0.893913479676623	0.960450328240811
Merged-chr8-90824483-3	chr8	90824399	90824599	+	781.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4336.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	3.56938054625811	3.29064328024827	3.16883914185283	3.46371866586813	3.2137389870557	3.47004653853483	3.39961109280301	3.61595459599374	0.14454632002476	0.787107688464014	0.917368649416754
Merged-chr3-89250665-2	chr3	89250565	89250765	+	790.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025327)	TTS (NM_025327)	4192.0	NM_001310625	66059.0	Mm.177991	NM_025327	ENSMUSG00000042747	Krtcap2	0610010I12Rik|Kcp2	keratinocyte associated protein 2	protein-coding	2.91389491371825	3.05835131437597	2.91425576528842	2.68920535921346	2.98925983457521	2.95908975246285	2.70831810090492	2.9726836519439	0.090113559092396	0.885123876696209	0.956920983840167
Merged-chr15-34530218-4	chr15	34530110	34530310	+	902.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026340, exon 16 of 16)	exon (NM_026340, exon 16 of 16)	34899.0	NM_152894	67724.0	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	5.54429190985982	5.63020379084927	6.14238333262661	5.91811545397634	4.6224899016242	4.80932175491146	5.20181879402074	4.50768130204957	-1.88822927446311	5.47382178015195e-08	2.48166344260787e-06
Merged-chr1-171272188-4	chr1	171272011	171272211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020579, intron 3 of 7)	intron (NM_020579, intron 3 of 7)	1783.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	4.83701359827008	4.71930604971442	4.80169792241882	4.88183228787094	4.86876737712777	4.64758597424471	4.74219723867365	4.83459080898759	-0.0708653968778939	0.829699574366014	0.934618333601978
Merged-chr17-69439358-4	chr17	69439265	69439465	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145192)	promoter-TSS (NM_001145192)	39.0	NM_001145192	320722.0	Mm.400254	NM_001145192	ENSMUSG00000091636	Akain1	A330050F15Rik	A kinase (PRKA) anchor inhibitor 1	protein-coding	5.31314791798409	5.22495466270879	5.25350361814896	5.57679960649412	5.20215866381584	5.26427894501325	5.28772067544218	5.11952297010453	-0.271794800795801	0.35968340120446	0.665443059431823
Merged-chr2-28468032-4	chr2	28467923	28468123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166031)	promoter-TSS (NM_001166031)	-43.0	NM_080452	118451.0	Mm.294951	NM_080452	ENSMUSG00000035772	Mrps2	1500019M10Rik	mitochondrial ribosomal protein S2	protein-coding	5.96229111183204	6.33406904585862	5.7662298977028	5.77413868133667	6.46229448128234	6.11704569429543	6.2865789754756	5.91262727163437	0.377010182351542	0.164944197676426	0.455273332540928
Merged-chr4-41124406-4	chr4	41124297	41124497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139236)	promoter-TSS (NM_139236)	-58.0	NM_139236	230082.0	Mm.285797	NM_139236	ENSMUSG00000028430	Nol6	AA410091|Nrap	nucleolar protein family 6 (RNA-associated)	protein-coding	8.35387969373347	8.41210965935577	8.16837443122736	8.38444752533409	8.45136399331595	8.48879198344769	8.56106941711691	8.33888750365117	0.159044215858633	0.302503976634286	0.614952034981775
Merged-chr18-75695375-4	chr18	75695247	75695447	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 1 of 11)	intron (NM_201354, intron 1 of 11)	2349.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	6.17409230778512	6.28413718500632	5.98822695595409	6.29715234590973	6.06721131364659	5.51597577265084	6.1435424521897	6.18990361642506	-0.29065825354453	0.26637855046564	0.578085840707737
Merged-chr2-32385147-3	chr2	32384999	32385199	+	696.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008491, intron 5 of 5)	intron (NM_008491, intron 5 of 5)	2640.0	NM_008491	16819.0	Mm.9537	NM_008491	ENSMUSG00000026822	Lcn2	24p3|AW212229|NRL|Sip24	lipocalin 2	protein-coding	2.64999044748839	2.90442473997783	2.65024011192095	2.70266199564352	2.83279897418338	2.89288490098557	2.8977514872689	3.01926969209609	0.815079531504007	0.187497626941739	0.485891890256793
Merged-chr18-32395809-4	chr18	32395714	32395914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	MTD|LTR|ERVL-MaLR	-17530.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	5.58434332426099	5.73601066610685	5.71572819887475	5.60285522963901	5.6013665171245	5.45662843324709	5.78153324139792	6.07447503631859	0.147332627233218	0.591624015006019	0.821682063690018
Merged-chr4-149407631-4	chr4	149407526	149407726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022022, intron 1 of 26)	intron (NM_022022, intron 1 of 26)	19005.0	NM_022022	63958.0	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	6.38872326833715	5.95168107989954	6.76892923373061	6.57520866854127	5.59596934015825	5.51028220243123	6.18180025402305	5.67840215341188	-1.06793992085087	0.000324575991544634	0.00540927054604436
Merged-chr16-38399644-2	chr16	38399544	38399744	+	977.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_134102, intron 9 of 10)	intron (NM_134102, intron 9 of 10)	33501.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	3.31300337929985	3.47815489200865	3.20195824055408	3.03383253922311	3.26146661169196	3.05402376773123	3.00515434757582	3.20028522564323	-0.467652741228078	0.420580400261739	0.713388099239967
Merged-chr17-57031856-7	chr17	57031725	57031925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010613)	promoter-TSS (NM_010613)	-318.0	NM_010613	16549.0	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	9.33096615373666	9.54147199862596	9.48090797313288	9.28014756320868	9.31266686550556	9.67451481712808	9.4605695346949	9.36624852939449	0.0587176734284603	0.703042898421095	0.880538622700905
Merged-chr5-146791543-2	chr5	146791443	146791643	+	797.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	3413.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	3.23705283118658	3.12812642023728	2.98626815913372	3.25284531118709	3.37546592347978	3.22627423107872	3.47939222446526	3.23579647985451	0.643494645683435	0.240321958052259	0.550870712287303
Merged-chr15-97939641-3	chr15	97939552	97939752	+	897.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24577.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	4.07618302147562	4.5005798255165	4.02618649733975	3.38569541848396	4.40367806533726	4.34663933936671	4.15370597718012	4.21516008334753	0.564169933347861	0.258452537400127	0.570369121898476
Merged-chr12-112976527-4	chr12	112976424	112976624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145900)	promoter-TSS (NM_001145900)	-39.0	NM_201646	399566.0	Mm.440140	NM_201646	ENSMUSG00000002803	Btbd6	-	BTB (POZ) domain containing 6	protein-coding	5.77813152092215	5.506768621765	5.48496126428366	5.91836621600492	5.4060660232998	5.85530226125486	6.13432248758556	5.75095680536029	0.175428859296094	0.556592237025892	0.802155922154042
Merged-chr14-13961746-5	chr14	13961645	13961845	+	977.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025435)	promoter-TSS (NM_025435)	107.0	NM_001359901	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	3.88249059626115	3.99083924064139	3.88303178720432	3.84737570252705	4.25505589134013	4.20232455427792	3.81429379730173	4.07570792990403	0.548321286408057	0.199114358036932	0.500933329503325
Merged-chr16-30733086-4	chr16	30732963	30733163	+	905.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	133340.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	3.98082355311124	4.24619065645343	3.67468627512778	4.23009568988712	4.45386220800551	4.26350913238531	4.29925049094417	4.71281120208745	0.914812904899307	0.0388798444560328	0.198055424642951
Merged-chr19-29494589-4	chr19	29494511	29494711	+	971.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	27376.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	4.70678067567828	5.08724914784005	5.01099433513671	4.85614159910591	4.92695711504111	5.21654076369182	4.98666740117373	5.10495465089024	0.265698773863273	0.40590422939843	0.702456276834042
Merged-chr15-96700681-2	chr15	96700581	96700781	+	884.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175121)	promoter-TSS (NM_175121)	-953.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	2.28741957986071	2.4060298308119	2.21080628618775	2.08976775216405	2.3122901843598	2.72757596026583	2.48555492151238	2.556357669637	1.6283881918941	0.02954981455193	0.165564093985503
Merged-chr9-55311754-4	chr9	55311664	55311864	+	967.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15149.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	5.00808189372815	5.41608072094592	4.65201284694124	5.13105477720692	5.05524621708796	5.1827980251653	4.91410070183697	5.03968995388798	-0.0739286851722187	0.82685481222252	0.933582996245152
Merged-chr7-4777020-4	chr7	4776929	4777129	+	890.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290423, intron 1 of 4)	CpG	1112.0	NM_008350	16156.0	Mm.35814	NM_008350	ENSMUSG00000004371	Il11	IL-11	interleukin 11	protein-coding	4.24909131932922	4.45656320413853	3.96784108199748	4.06190060446867	4.27315114709993	4.03670940259198	3.78630120173261	4.1599322717926	-0.282728768418368	0.521882276056313	0.781714194600427
Merged-chr10-18194875-4	chr10	18194768	18194968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195036, intron 3 of 20)	intron (NM_001195036, intron 3 of 20)	16022.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	5.14339317575297	5.27751837499547	5.53558291713087	5.46454604348698	5.35397194870551	5.54383138648224	5.34305620590404	5.53167835223732	0.122566113844373	0.668077981456245	0.862837936034118
Merged-chr14-76097425-4	chr14	76097334	76097534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026177, intron 6 of 7)	intron (NM_026177, intron 6 of 7)	13381.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	6.89111794329917	6.50381606300022	7.3040623007212	7.12925547957722	6.38713497697863	6.47511384747973	6.55490612349953	6.51679013834063	-0.728888884652684	0.00241543293155758	0.0270284704661747
Merged-chr7-26253563-4	chr7	26253476	26253676	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13255.0	NM_001167540	100312477.0	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	5.15439898109523	5.71659870975475	5.94889475684259	5.90879949674537	5.11110816736565	5.06496133459723	5.52178415383424	5.00164958150262	-0.938620727462638	0.00448248898504372	0.0438328181709612
Merged-chr14-55743911-4	chr14	55743820	55744020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026819, intron 2 of 8)	intron (NM_026819, intron 2 of 8)	1764.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	6.46779548801541	6.36644379204694	6.03664911541945	6.21380599497366	6.48097281898661	6.57635816486852	6.5003572941324	6.59070924882635	0.381785704394403	0.08346348933933	0.314031488935626
Merged-chr7-80154920-4	chr7	80154790	80154990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-31951.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	5.54731052266405	5.57689642012257	5.3007697844146	5.33111315181113	5.38817165853747	5.41360484324689	4.76317838156611	5.20261819044235	-0.393137878627471	0.214126023668087	0.519788161034397
Merged-chr17-78903379-4	chr17	78903306	78903506	+	859.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163625, intron 2 of 6)	intron (NM_001163625, intron 2 of 6)	3586.0	NM_001163625	73671.0	Mm.45514	NM_001163625	ENSMUSG00000038045	Sult6b1	2410078J06Rik|AV101767|ST6B1	sulfotransferase family, cytosolic, 6B, member 1	protein-coding	4.37549842446612	4.27117012098841	4.33213242349253	4.80823733846504	4.24901797358507	4.21168484215209	4.55435326654698	4.37343625707821	-0.312785341220498	0.443641086075388	0.730108641783081
Merged-chr11-117827539-2	chr11	117827439	117827639	+	950.944458	f1_balb.idr|f1_c57bl6.idr	intron (NM_027827, intron 1 of 10)	B1_Mur2|SINE|Alu	-1525.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	2.47158536300593	2.54121592516225	2.68004359140217	2.79881711267332	2.62963529182773	2.84900044858029	2.73281386407067	2.80097961185631	0.547890998151032	0.41527611811755	0.709530099060962
Merged-chr13-60691803-1	chr13	60691703	60691903	+	618.666687	f0_balb.idr	intron (NM_134062, intron 2 of 26)	ORR1D2|LTR|ERVL-MaLR	89592.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	3.41665248651201	3.14417042724607	3.21973671184757	3.09408261313219	3.14456001121866	2.72478554340335	2.9756095640363	2.84951173882724	-1.15902171041169	0.072075008284676	0.288483044467589
Merged-chr17-78372811-4	chr17	78372710	78372910	+	778.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 16 of 16)	intron (NM_015800, intron 16 of 16)	45342.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	3.77506625639833	4.32350412097472	4.32813828993345	3.9441318652312	3.94946514828322	3.77500409542994	4.06349286022319	3.82968216015956	-0.535178725626599	0.244571065554324	0.5557618752544
Merged-chr5-110598893-3	chr5	110598784	110598984	+	710.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198306, intron 5 of 10)	intron (NM_198306, intron 5 of 10)	-4621.0	NM_001122639	231605.0	Mm.275748	NM_198306	ENSMUSG00000033316	Galnt9	GalNAc-T9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding	3.39442794124062	3.81503686880577	3.27759750770846	3.33289577178846	3.12295999206275	3.51023192205692	3.26588054875795	3.27595950651674	-0.622536112242468	0.265673286548381	0.577343448210064
Merged-chr2-60852057-4	chr2	60851986	60852186	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	29352.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	5.63684774810403	5.24604550973868	5.47209637270739	5.81360060550891	5.77510243043871	5.70582889582125	6.11068942891686	5.27816031129164	0.302656654039753	0.3342506600361	0.644805241742718
Merged-chr1-128723898-3	chr1	128723792	128723992	+	761.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-131593.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	3.69062392665854	3.9625939143926	3.52927246047634	3.68074402045661	3.86479533810668	3.45800465875199	3.57167356331528	3.34312413280569	-0.432894493853702	0.405823396527412	0.702456276834042
Merged-chr8-70753312-4	chr8	70753203	70753403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1376.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	5.82297842582377	5.69735944353515	5.77560133925426	6.1934357153307	5.83008620032693	5.7673900274107	5.67061654746616	5.95469215234989	-0.157825642232505	0.558673665191398	0.803333928903629
Merged-chr1-36914060-3	chr1	36913960	36914160	+	686.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 1 of 40)	intron (NM_018872, intron 1 of 40)	25467.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	3.18409971311003	3.38420317082093	3.18450838084955	3.20681932844519	3.05766096740005	3.17245441756613	3.11437466365076	3.06194755084337	-0.562907352869123	0.310413047031355	0.6225601620496
Merged-chr10-42759918-4	chr10	42759817	42760017	+	942.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1579.0	NM_001359283	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	4.51289752273615	5.27229633603188	4.69114037746606	5.01529919326955	5.12372966621096	4.693878883777	4.78738434324457	4.91561747341245	-0.0347860051668094	0.925314421734212	0.972448363693831
Merged-chr15-99154782-3	chr15	99154672	99154872	+	684.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139140, intron 2 of 12)	RLTR45|LTR|ERVK	27927.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	3.44532516870277	3.66073140257667	3.26668299457109	3.15036863623502	3.62191697252232	3.37997879435038	3.37606638138796	3.64931539010562	0.432283587605326	0.418443447956849	0.711931976817109
Merged-chr5-64344487-4	chr5	64344393	64344593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 17 of 18)	intron (NM_001289514, intron 17 of 18)	114136.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	7.22082167547261	7.20012809526309	7.10489725702901	7.1851887979343	7.38128572933505	7.60473742934908	7.68464973793315	7.22815125105397	0.40972191782655	0.0307951176868178	0.170210101089456
Merged-chr7-101549426-4	chr7	101549338	101549538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	6364.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	5.16126949226553	5.6211179019268	4.89926584209859	4.87371908479313	6.56633275204457	6.45617930425655	6.50564537468998	6.43478420902629	2.14228586209242	3.4629349894758e-14	4.94956324529916e-12
Merged-chr11-31675645-1	chr11	31675545	31675745	+	614.666687	f1_c57bl6.idr	Intergenic	Intergenic	-3783.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	3.29487373302895	3.36946083608771	3.2952953394988	3.20709494916571	3.50734606760498	3.34768387338942	3.16388034801384	3.34997384469305	0.238542440456051	0.650517556688388	0.853294802585927
Merged-chr9-56101240-4	chr9	56101119	56101319	+	870.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	11243.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	4.48151639751812	4.51031317051913	4.68162905870995	4.53685128677782	4.52090881166136	4.77696248927833	4.58414126554651	4.52178352337762	0.104706715913402	0.76601670405433	0.908480980020381
Merged-chr8-31111717-4	chr8	31111650	31111850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175136)	promoter-TSS (NM_175136)	-96.0	NM_175136	68867.0	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	8.1598534397342	8.30682364152236	8.17276720760927	8.20603029197599	7.50199557863121	7.55753276004204	7.542121379336	7.36305140983043	-0.937183362477607	7.90645986441085e-09	4.26667101356254e-07
Merged-chr9-89267285-4	chr9	89267157	89267357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55873.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	7.24707184913117	7.31133827136523	7.5460271181223	7.16210689828781	6.62070228360256	6.5095625590034	6.5432911057282	6.71962280685056	-0.996115851676923	9.98928376769891e-07	3.49914975049725e-05
Merged-chr18-32376435-4	chr18	32376392	32376592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083334)	promoter-TSS (NM_001083334)	-725.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	5.23866825109811	5.16239693133477	5.27025594881822	5.07495636866254	5.48605367143295	5.17849525897432	5.24419955858698	5.35436614983198	0.280241940281595	0.336172568820624	0.646244323954596
Merged-chr1-107502259-4	chr1	107502172	107502372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9151.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	6.81282018119555	7.08085110558449	7.47550849531337	7.27139972988216	6.73537335327103	7.03420330613547	6.92917768939218	6.70324684281165	-0.461202189276368	0.0372559125535183	0.192538923956065
Merged-chr15-64047219-3	chr15	64047127	64047327	+	920.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	12537.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.82385397217877	3.49737468394022	3.82443332651696	3.74228796984139	3.46474078920787	3.5142026264913	3.45008529557672	3.67974217625158	-0.643546377204541	0.189898594792651	0.48897703139117
Merged-chr19-5490428-4	chr19	5490330	5490530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007687)	promoter-TSS (NM_007687)	-25.0	NM_007687	12631.0	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	7.70337324321579	7.86914310471733	7.28005942036555	7.37763993924353	8.08992411997155	7.95365610167053	7.75374947122256	7.74756719047592	0.420364538039635	0.0394788403114674	0.200118528310065
Merged-chr18-60908254-4	chr18	60908171	60908371	+	783.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3969.0	NM_001038499	545260.0	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	3.81246585331324	3.85571200887249	3.86655813422242	4.33649448034936	3.79729194019106	3.93313780047636	4.08701057537796	4.05858519604808	-0.102758536738164	0.825529790471133	0.933108872014231
Merged-chr3-146800691-3	chr3	146800601	146800801	+	773.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011100, intron 1 of 9)	MTD|LTR|ERVL-MaLR	12245.0	NM_011100	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	3.18486009832185	3.13226111072643	3.35948682880085	3.18762830491681	2.99809167938533	3.02171415939363	3.39813899962471	3.73066171629844	0.377031131216435	0.526960280988624	0.784040673923271
Merged-chr18-38233538-4	chr18	38233436	38233636	+	926.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16662.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	4.89819345816167	4.85322681758709	4.55107816694749	4.79332823877927	4.66059105362394	4.68364343331628	4.80639710166301	4.96152615395337	-0.00688037269637316	0.983822268837054	0.994171970719678
Merged-chr7-79935183-3	chr7	79935081	79935281	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027420)	promoter-TSS (NM_027420)	83.0	NM_027420	70420.0	Mm.34266	NM_027420	ENSMUSG00000039043	Arpin	2610034B18Rik	actin-related protein 2/3 complex inhibitor	protein-coding	4.08290664396806	4.09584332060299	3.89491502982316	3.74461028772945	3.93615621666186	4.06722189662007	3.66081269359281	3.99028661099205	-0.0863296022437074	0.848333976517744	0.942683071025782
Merged-chr7-105626843-4	chr7	105626700	105626900	+	827.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018880, intron 1 of 11)	intron (NM_018880, intron 1 of 11)	6771.0	NM_018880	55992.0	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	3.87380347515425	3.9478344668782	3.72402847535245	3.4785935885365	3.69641720095906	3.6713938496648	3.76043941558028	3.91836710266446	0.0207632692317871	0.965351129293537	0.987743024598971
Merged-chr12-102417880-4	chr12	102417768	102417968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 2 of 13)	intron (NM_011175, intron 2 of 13)	21945.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.95308263352233	5.99561658081717	5.25354089796099	5.87695129203994	5.72094814110444	5.7463024761666	5.54193196841286	5.69894043968849	-0.212360325187816	0.459380101830732	0.741927216105684
Merged-chr10-81597386-3	chr10	81597300	81597500	+	822.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359135)	promoter-TSS (NM_001359135)	-33.0	NM_001359135	114606.0	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	3.58015743622191	3.6330100896548	3.73623308852543	3.63720701413672	3.55843524089631	3.51812298775065	3.51120864369079	3.87230245697571	-0.0760658365632993	0.87420052829798	0.952832392676241
Merged-chr5-5860926-3	chr5	5860830	5861030	+	960.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-111613.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	3.66066272148394	3.23856347828417	3.56671940164152	3.6590137341277	3.21179716788615	3.13593030625727	3.39684994653187	3.2923470927192	-1.01164081205241	0.0650187462071877	0.271244246646432
Merged-chr4-142078205-4	chr4	142078102	142078302	+	937.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-6096.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	4.79651964852076	4.57979327620467	4.2871352340358	4.43027597702348	4.4899166645757	4.63931515861553	4.31555081071533	4.28456420439474	-0.205933690502826	0.592063756373922	0.821919268747471
Merged-chr13-32339365-2	chr13	32339265	32339465	+	876.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146041)	promoter-TSS (NM_146041)	-821.0	NM_146041	218138.0	Mm.247143	NM_146041	ENSMUSG00000038372	Gmds	BC031788|C87208	GDP-mannose 4, 6-dehydratase	protein-coding	3.34034380278425	3.12173810144413	3.34080693651172	3.31688550370901	3.19854361498486	3.08556647703278	3.21894996064011	3.22919311876205	-0.373368340342028	0.49188661641961	0.763232479244282
Merged-chr12-108641573-2	chr12	108641473	108641673	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	5820.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	4.3914362094078	4.69350156795278	4.77489397844281	4.74650107179769	4.92559850989343	4.70892532164861	4.8570912727441	4.84316126333026	0.358389094683266	0.293415122773939	0.605994016535346
Merged-chr3-75293467-4	chr3	75293375	75293575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23397.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	7.99283337587596	7.98715577741882	8.25577093982983	7.9877757520793	8.02908228851577	7.98991315101035	7.8354620597803	7.68383032640608	-0.209650042024654	0.228282496720509	0.537124420249944
Merged-chr2-29060254-4	chr2	29060166	29060366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009442)	promoter-TSS (NM_009442)	3.0	NM_009442	22130.0	Mm.252195	NM_009442	ENSMUSG00000026803	Ttf1	AV245725|TTF-1|TTF-I	transcription termination factor, RNA polymerase I	protein-coding	6.44193542770698	7.11556468403798	6.07368654984309	6.27573290175027	6.68190781619172	7.13671066031359	6.35563856032086	6.60506058223444	0.263296225260285	0.381302869084062	0.683560179285592
Merged-chr14-54231380-2	chr14	54231321	54231521	+	837.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	22508.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	2.93632567514866	2.95328414842671	2.99916914421414	2.8770554811566	3.03784919812317	3.04485892676501	3.10349899123274	3.11409364986177	0.577128539500718	0.306651171240302	0.619051127874117
Merged-chr17-70738384-4	chr17	70738291	70738491	+	971.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	108386.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	4.77953074341689	5.04024698779855	4.85596778009128	4.86247055587558	4.77432563911241	4.79237516352566	4.83289030698467	5.20281311935957	0.0406808736100436	0.902598280210055	0.963848753135321
Merged-chr2-50687943-4	chr2	50687826	50688026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-221758.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	6.51645772972964	6.44174475876733	6.33055870203999	6.16590991959089	6.34978358980546	6.43123729686603	6.24223293365867	6.37983602468403	-0.00802368665088355	0.971492903752058	0.989698355367312
Merged-chr15-99416720-4	chr15	99416629	99416829	+	920.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23510.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	4.69448292479039	4.7051039009393	4.49444715917128	4.23674060388379	5.11768009410037	4.58182653771924	4.43033979344519	4.53428746660064	0.378503263325739	0.344758870089441	0.653222019700704
Merged-chr2-24975151-4	chr2	24975038	24975238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146251)	promoter-TSS (NM_146251)	-40.0	NM_001031808	107733.0	Mm.23010	NM_001031808	ENSMUSG00000036850	Mrpl41	MRP-L27|Rpml27	mitochondrial ribosomal protein L41	protein-coding	9.0070760282759	9.12132925119392	9.14841709914692	9.00426903967535	9.00911131194646	9.00425903969687	9.19920392226254	8.80454549389587	-0.0722670857587918	0.633854068106207	0.844900836080454
Merged-chr1-191817999-4	chr1	191817900	191818100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3473.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	5.94093455902649	6.32711551222518	5.63269136505427	6.0587156599226	5.92496192125816	5.89612263339043	6.59528179803867	5.79250928327014	0.117086914289033	0.697571841446531	0.877936058816528
Merged-chr9-116145399-4	chr9	116145296	116145496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	29967.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	6.57365456074601	6.60009804133212	6.66507161859777	7.00774303769457	6.34468818699371	6.145858805308	6.26436072143912	6.23240219564457	-0.714078834874278	0.00188852404599564	0.0223628769039966
Merged-chr2-25607974-4	chr2	25607865	25608065	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029859)	TTS (NM_029859)	481.0	NM_001024616	227624.0	Mm.29600	NM_001024616	ENSMUSG00000015087	Rabl6	B230208H17Rik|Rbel1|Rbel1a|Rbel1b|parf	RAB, member RAS oncogene family-like 6	protein-coding	4.97249175185285	5.24694612915028	5.81665772467362	5.28528493291517	5.41437244065108	5.67943695786136	5.2070886636764	5.95256647080457	0.39316852532447	0.247690307333469	0.558888728359504
Merged-chr9-47671257-3	chr9	47671131	47671331	+	829.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	140879.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	4.29326177471243	3.95065522663226	4.68594075807841	4.30287321857593	3.37379602828968	3.58400740918834	3.64807598941531	3.59657922621124	-2.35710127400217	5.35027088685088e-06	0.000157627041165215
Merged-chr11-114982086-3	chr11	114982006	114982206	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145437)	TTS (NM_145437)	7780.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	7.27700071124177	7.33302870273189	6.8860606881827	7.04371049785931	4.52319379620022	4.57583026232021	4.64435864650696	4.60591354119069	-4.62922335154418	1.76317708926151e-38	5.70459918347933e-35
Merged-chr13-111941378-1	chr13	111941278	111941478	+	922.0	f0_balb.idr	Intergenic	PB1D10|SINE|Alu	73442.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	3.28516110670523	3.28027777503202	3.60452765288507	3.39505537659117	3.50262558487381	3.26946452915621	3.27402569138034	3.45308610084223	-0.0412088365747416	0.937433080768302	0.977334367260951
Merged-chr10-117755520-7	chr10	117755348	117755548	+	891.1904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134010, intron 26 of 27)	intron (NM_134010, intron 26 of 27)	-9090.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	3.94850128310403	3.84121714276522	3.999215678256	3.80253343495066	3.93371058303225	4.26499261830671	3.93253421216077	4.41188853685151	0.676842216303624	0.118853245456624	0.381349403099396
Merged-chr6-92269214-4	chr6	92269119	92269319	+	814.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24569.0	NM_009426	22044.0	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	3.85869313655195	3.51776941106265	3.39066882641147	3.67377303174156	4.17998503959013	3.82208146178645	4.10560695451016	3.90527186521162	1.11987722374016	0.0178434454825811	0.118510647196477
Merged-chr5-35215765-3	chr5	35215665	35215865	+	678.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62801.0	NM_007418	11553.0	Mm.57205	NM_007418	ENSMUSG00000045318	Adra2c	Adra-2c|[a]2C|alpha2-C4|alpha2C	adrenergic receptor, alpha 2c	protein-coding	3.65498991359885	3.82648082625672	3.47649204179254	3.35072448242062	3.88862564612766	3.83025972841434	3.89086788318446	3.99440697531701	0.970757853216417	0.039817547110545	0.201190685439162
Merged-chr3-115762815-3	chr3	115762699	115762899	+	878.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47744.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	3.3868695011833	3.64052166182209	3.80044732369669	3.38859364233914	3.36372664756135	3.56233095449274	3.49001330282189	3.55618308398951	-0.221058367445384	0.664747729935307	0.861073297406066
Merged-chr12-26460270-4	chr12	26460153	26460353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3801.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	7.51404139396311	7.80157132446131	6.96304982665098	7.56080584914491	7.42300316383933	7.59793509043148	7.54890139719337	7.45422781898259	0.00679939631136388	0.974798287100343	0.990966385645806
Merged-chr8-83090274-4	chr8	83090163	83090363	+	853.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177378, exon 7 of 7)	3' UTR (NM_177378, exon 7 of 7)	-75089.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	4.21927143753452	4.22649791332712	3.37737522816649	3.8261158438858	4.11400724923656	3.69996051113126	3.74406876102449	3.91309049003704	-0.195974764824279	0.711715380758725	0.884600435455677
Merged-chr14-121366391-4	chr14	121366269	121366469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	12861.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	5.5949220367314	5.2145250596359	5.5217402015587	5.6686937295861	5.28981585107276	4.77873381986675	5.33195572255944	5.09911440980105	-0.658009068515479	0.0377149797770499	0.194150180483882
Merged-chr13-50418887-4	chr13	50418768	50418968	+	870.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154272, intron 1 of 10)	RLTR30B_MM|LTR|ERV1	1004.0	NR_154273	109082.0	Mm.18638	NM_175401	ENSMUSG00000037816	Fbxw17	1110064L07Rik|C85886	F-box and WD-40 domain protein 17	protein-coding	4.07875348369791	3.9816592209143	3.74434259469573	3.92972187582618	3.89439535035495	3.62116160904773	3.8824186199712	3.79580681256262	-0.372742719060628	0.408576958126565	0.704388708563461
Merged-chr13-47044444-4	chr13	47044337	47044537	+	804.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172262, intron 1 of 20)	intron (NM_172262, intron 1 of 20)	938.0	NM_172262	218214.0	Mm.31259	NM_172262	ENSMUSG00000038080	Kdm1b	4632428N09Rik|AI482520|Aof1	lysine (K)-specific demethylase 1B	protein-coding	3.4441687124572	4.04741320505435	3.63528327749842	3.20325383716287	3.8014230218051	4.02826103970147	3.97843192471417	4.23922243233369	1.14664183095011	0.0289469496449564	0.163473098125861
Merged-chr7-27336100-4	chr7	27336001	27336201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175641, intron 1 of 32)	intron (NM_175641, intron 1 of 32)	1511.0	NM_175641	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	5.96272363000483	5.72327666173037	5.51044924569341	6.13794757022506	6.1820141269806	6.28658014757387	6.29859576021718	6.04622519345726	0.513340642942588	0.0534731406249515	0.241354767060458
Merged-chr3-94837411-4	chr3	94837312	94837512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172683)	promoter-TSS (NM_172683)	-155.0	NM_001165948	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	6.50214775262476	6.65474983909952	6.44912731768426	6.52715601271923	6.97791484516565	6.9060690876628	7.19710050792811	6.965673463261	0.677123641561878	0.00070863052184252	0.010216652200573
Merged-chr8-105880886-4	chr8	105880797	105880997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181594)	promoter-TSS (NM_181594)	16.0	NM_181594	234699.0	Mm.28979	NM_181594	ENSMUSG00000036270	Edc4	BC022641	enhancer of mRNA decapping 4	protein-coding	5.24552147563111	5.43675972014361	4.95539221773655	5.56930120583263	5.47524369813453	5.28733903356849	5.6311036160438	5.60807156557422	0.289231021080434	0.346477214861369	0.654719806798213
Merged-chr2-60383401-4	chr2	60383287	60383487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013825)	promoter-TSS (NM_013825)	-156.0	NM_013825	17076.0	Mm.2074	NM_013825	ENSMUSG00000026980	Ly75	CD205|DEC-205|DEC205	lymphocyte antigen 75	protein-coding	6.24174582997408	5.71024629375841	6.37381119992676	6.14164233548886	5.7395739781741	5.6637132910859	5.68420777634135	5.4477490424393	-0.793675895989643	0.00389089895773178	0.0392225317819559
Merged-chr2-156147456-3	chr2	156147368	156147568	+	752.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291114, exon 17 of 17)	3' UTR (NM_001291114, exon 17 of 17)	3235.0	NM_025946	67067.0	Mm.371623	NM_025946	ENSMUSG00000067847	Romo1	2010100O12Rik|AI853864	reactive oxygen species modulator 1	protein-coding	3.32277555453534	3.76005526616661	3.52589763795357	3.53763897569293	2.83465849901321	2.98136948511532	2.86253245365565	2.79043259266059	-3.17514175372919	1.19149690770778e-05	0.000322592462509441
Merged-chr5-143909902-4	chr5	143909822	143910022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008886)	promoter-TSS (NM_008886)	-79.0	NM_008886	18861.0	Mm.2950	NM_008886	ENSMUSG00000075569	Pms2	AW555130|Pmsl2	PMS1 homolog2, mismatch repair system component	protein-coding	7.7941572283611	7.91185884188394	7.45786412283735	7.618717401425	7.83460944176757	7.70311985144387	7.92047343344754	7.41234656386805	0.037252346782939	0.850016924507746	0.943377775572077
Merged-chr1-165645375-2	chr1	165645275	165645475	+	855.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10834.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	2.94984409748186	2.99218654312105	2.95024246841301	2.40298829686421	2.79872566946709	2.79319834048634	3.10554917886099	2.94863129489243	0.314789441254477	0.649252584090733	0.852656869739189
Merged-chr6-8691836-2	chr6	8691736	8691936	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252266, intron 5 of 11)	RMER17C|LTR|ERVK	66622.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	3.79047699815835	2.99921180207246	3.56247639618875	3.20285234729422	3.26835643077047	3.51920319177606	3.38887218443665	3.34256075429101	-0.128496750752759	0.825871396416427	0.933180824081032
Merged-chr10-10132766-4	chr10	10132676	10132876	+	887.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-231736.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	5.55087055713473	4.84789256391863	5.52859977539799	5.81303440255954	4.63001644015164	4.69084580909462	4.91629846565369	4.49938611235231	-1.54469451406038	3.36173106406848e-05	0.000800015564725277
Merged-chr14-58319394-1	chr14	58319294	58319494	+	764.0	f0_balb.idr	Intergenic	RSINE1|SINE|B4	246708.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	3.43769386659231	3.11569795463287	3.33636713650165	3.42582799071039	3.33879938745688	3.21414159939773	3.03005143141601	2.89797760908852	-0.751402965107812	0.205929502517942	0.509749819500072
Merged-chr11-54492253-4	chr11	54492167	54492367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 9 of 17)	L1MB3|LINE|L1	-30578.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	6.33157748041872	6.7818901561568	6.420206464756	6.15607310494349	6.23296112482954	6.41495891234395	6.01854865810677	6.13262689953676	-0.344012824437665	0.174941038611083	0.469590383048546
Merged-chr16-28929058-4	chr16	28928979	28929179	+	885.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177718, intron 1 of 1)	CpG	619.0	NM_177718	239796.0	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	4.180996235109	3.84568721267955	3.49406487998951	4.05262766396499	3.97279739057084	3.7447013535004	4.16223701748786	4.17895063292489	0.276479101713475	0.566262121896187	0.807835530970224
Merged-chr2-133442765-3	chr2	133442645	133442845	+	799.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109414.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	3.9167178394033	3.36443389963956	3.79078075547172	3.50994016382725	3.38327306105272	3.60833180777445	3.23426710085264	3.24319052633849	-0.945456987357643	0.0849521079727649	0.317118003639261
Merged-chr19-40707687-4	chr19	40707585	40707785	+	981.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	BGLII_B2|LTR|ERVK	47915.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	5.31190904435092	4.68165767975174	5.03286180109165	4.77587263984498	4.80587160015758	4.76390155824477	4.69081951052683	4.66867296479034	-0.458671856536739	0.196522202728327	0.497660945922854
Merged-chr4-41135370-4	chr4	41135243	41135443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026275)	promoter-TSS (NM_026275)	-678.0	NM_026275	67615.0	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	7.23999404635093	7.15397217166998	7.52381127962648	7.28968759318288	6.74345551587761	7.09482762822576	6.9742222565268	6.92598268459261	-0.513803266062268	0.00961480584304052	0.07675776862963
Merged-chr5-3279221-3	chr5	3279127	3279327	+	621.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-64666.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	3.57727606123047	3.74588299324624	3.47262531447887	2.94315343132493	3.28020485876796	3.69770113859465	3.15569213663596	3.35641144386915	-0.273975037343433	0.64933833856695	0.852690827261032
Merged-chr17-34592164-4	chr17	34592047	34592247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017463)	promoter-TSS (NM_017463)	-324.0	NM_017463	18515.0	Mm.390957	NM_017463	ENSMUSG00000034673	Pbx2	AU043397|G17	pre B cell leukemia homeobox 2	protein-coding	5.24748188475756	4.80179042321862	4.71436574551001	5.19146076377451	5.2341814522491	5.36078750764816	5.06898224618324	5.05713823315695	0.311969328751294	0.345038170378813	0.653357561969643
Merged-chr6-70864471-4	chr6	70864374	70864574	+	959.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010121, intron 2 of 16)	intron (NM_010121, intron 2 of 16)	19959.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	5.05429338042897	5.0667833904948	5.36806532292275	5.56960602788449	5.20396980721499	4.8728426146378	5.09924912367488	5.47039862340442	-0.214370126042412	0.518830985278515	0.779745431679921
Merged-chr6-117168628-3	chr6	117168600	117168800	+	630.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021704, exon 1 of 3)	exon (NM_021704, exon 1 of 3)	165.0	NM_021704	20315.0	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	2.91231591252101	2.80477207956517	2.91272368218522	2.64222036294269	2.87696480531732	2.62775426900691	2.72384062155138	2.52367997655601	-0.553419155928634	0.411978953683193	0.70726552639751
Merged-chr15-81522261-4	chr15	81522163	81522363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55947.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	6.57169938498709	6.07927154988412	5.88429738629561	6.31522723812974	6.1783495104709	6.41288980514735	6.4637290915313	6.11163605956685	0.0828946864864482	0.746192432100415	0.899968661443807
Merged-chr6-6310395-3	chr6	6310297	6310497	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136905, intron 1 of 3)	Tigger1|DNA|TcMar-Tigger	61738.0	NR_136905	101056138.0	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	5.01172813555594	5.16224451473603	4.92239582369853	4.44405486328182	4.08568552506742	4.31437102158965	4.3676830824356	4.28663623620131	-1.44841693677878	0.000407927905835342	0.00654698994576185
Merged-chr2-91729663-2	chr2	91729563	91729763	+	746.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172669)	promoter-TSS (NM_172669)	-475.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	2.91775852958775	2.63921852221756	2.70311662043217	2.67256856316266	3.46891190692243	3.0954692815119	3.09101483169833	3.31377718842886	2.25069623459781	0.000263661328313185	0.0045573457231676
Merged-chr17-23982358-4	chr17	23982247	23982447	+	879.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7117.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	3.43579866510415	3.51870816280911	3.30953019194551	3.5229526163247	3.79017865827925	3.61106630055175	3.69228150024211	3.84463865125605	0.887592226001465	0.0658459970184094	0.273206191884195
Merged-chr7-4502824-4	chr7	4502641	4502841	+	896.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1061.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	3.56740073849699	3.38329946461584	4.06545581696914	3.04076827339208	3.74293876992489	3.56279551770483	3.96105783231463	4.28840898841294	0.999927909149411	0.0860280814673599	0.319603681631458
Merged-chr17-28233192-1	chr17	28233092	28233292	+	1000.0	f0_balb.idr	intron (NM_011145, intron 1 of 7)	intron (NM_011145, intron 1 of 7)	438.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	4.29937197763398	4.67862362547968	4.67501179467484	4.21454367003262	4.43919159825507	4.65341813534924	4.3737112386276	4.67187121034963	0.146165224833989	0.705897293458055	0.881859110549825
Merged-chr9-120502225-4	chr9	120502128	120502328	+	906.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9622.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	3.69792662670452	4.42750038897031	3.76016880569244	3.73848189182575	4.39702159703533	4.15824531353256	4.39234870359423	3.98030996157436	0.774263039618168	0.104632593459988	0.355716834784757
Merged-chr10-81408992-4	chr10	81408883	81409083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152732)	promoter-TSS (NR_152732)	-592.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	7.30178241142702	7.47487112895179	7.15829740007685	7.37320942756753	7.3370811132145	7.40433835959318	7.4870199747374	7.22213159842267	0.0375963042262026	0.837209354915053	0.938189376728559
Merged-chr10-41951358-4	chr10	41951249	41951449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 11 of 17)	MTD|LTR|ERVL-MaLR	63910.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	5.00482431885687	5.11467511483386	5.10564984729319	5.2066512204306	4.98668109161446	4.47614428538063	5.17246809526845	5.28086313281255	-0.190719519774539	0.578181469949713	0.81458069221668
Merged-chr19-18624074-4	chr19	18623989	18624189	+	922.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	7724.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	4.64576073694146	4.60091079132595	4.64652082694632	4.78386941876468	4.5301092358655	4.22999983930598	4.33898548522014	4.35528430942554	-0.679574307421994	0.0654419679879667	0.272339443370877
Merged-chr14-120324448-4	chr14	120324349	120324549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 1 of 8)	(TCC)n|Simple_repeat|Simple_repeat	17997.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	5.55686992380113	5.19385254911186	5.77991401724194	5.49011111095275	5.84284903747709	5.5614425612537	5.3579725977758	5.75299004642444	0.229085006924689	0.43425780196235	0.72356647126286
Merged-chr15-58758398-4	chr15	58758303	58758503	+	941.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65024.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	5.19498823572364	5.1885205108616	4.88746452846812	5.31352990312802	4.95956649927062	4.76738585659949	5.22912229867875	5.25163355828126	-0.192418205215443	0.554215461692369	0.800627178677568
Merged-chr12-72070430-4	chr12	72070331	72070531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181752, exon 1 of 1)	exon (NM_181752, exon 1 of 1)	560.0	NM_181752	238252.0	Mm.390508	NM_181752	ENSMUSG00000043398	Gpr135	PAFR	G protein-coupled receptor 135	protein-coding	6.38690897360166	6.10179722184232	6.10560524455962	6.39377382603226	6.28253104955091	6.05291235188427	6.25058370925759	6.20257251604382	-0.0895276223257898	0.700763223050884	0.879339000309196
Merged-chr19-56548554-4	chr19	56548432	56548632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018831)	promoter-TSS (NM_018831)	271.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	7.05146377892299	7.15572615467704	7.2758872449531	7.09802661905965	7.09490711726579	6.8970645491109	7.25974674261877	6.91926970021102	-0.123791339121623	0.523813817468164	0.782647016014066
Merged-chr6-88435831-3	chr6	88435718	88435918	+	901.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023060, intron 1 of 6)	intron (NM_023060, intron 1 of 6)	10721.0	NM_023060	65967.0	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|mSelB|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	3.58363748418772	3.67696160546559	3.78643657397521	3.65983181105051	3.53255359331901	3.64337555888622	3.67430248949271	3.52631699781717	-0.268429528909173	0.569448220498174	0.809366519988776
Merged-chr6-86438614-5	chr6	86438496	86438696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243741)	promoter-TSS (NM_001243741)	-50.0	NM_001243742	232196.0	Mm.404040	NM_146170	ENSMUSG00000046679	C87436	-	expressed sequence C87436	protein-coding	5.39036988785143	5.85494029446898	5.45191145474983	5.54331635635139	5.93837899016601	5.59771428362703	5.71550066896252	5.69208927782906	0.29538957078021	0.284029670651346	0.596035490823689
Merged-chr8-13162320-4	chr8	13162224	13162424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010684, intron 1 of 8)	intron (NM_010684, intron 1 of 8)	3163.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	5.82809031691442	5.92381451713884	5.91768784132765	5.47900008834521	5.74892819222308	5.54246736920276	5.70475024238331	5.75423902497045	-0.145644296675186	0.593154713855435	0.822553370861762
Merged-chr13-4767076-4	chr13	4766983	4767183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-157919.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	6.08767601896014	5.43350337855886	5.70064598468797	5.67463650681109	5.64747476815811	5.68726541158872	5.67177393483488	5.83966667891117	-0.0427027778832753	0.877260866170059	0.954049674455594
Merged-chr1-34828098-4	chr1	34828003	34828203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160235, intron 3 of 7)	intron (NM_001160235, intron 3 of 7)	14947.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	6.85192893441906	6.37971794576257	7.12802515666778	7.22922783154636	6.67778378624956	6.36130675849686	6.64734926445129	6.83482816277652	-0.426251515833023	0.0956473735742657	0.338592748975116
Merged-chr8-104247215-4	chr8	104247111	104247311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 2 of 8)	intron (NR_045642, intron 2 of 8)	1347.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	7.985648169795	8.0148245942278	8.27985154331864	8.42770622975227	7.95826607694429	7.52403307658829	8.21896813747063	7.81255964661701	-0.372447490163654	0.0716234000996575	0.287426396554858
Merged-chr1-182528129-4	chr1	182528008	182528208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10498.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	6.87583437183753	7.23679808472216	6.54653199893847	6.795323981751	6.65956406467106	7.02659858427848	6.76059144940279	6.48929478604306	-0.203265800050939	0.395018135687632	0.694006264372866
Merged-chr4-55532593-4	chr4	55532481	55532681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010637)	promoter-TSS (NM_010637)	-106.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	8.28152321047189	8.66703326924101	8.47999724179878	8.30363786219161	8.46342774668018	8.56044791106091	8.20901106226144	8.41394390073905	-0.028640465415258	0.867504242991976	0.950331199983684
Merged-chr4-74305912-4	chr4	74305799	74305999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 4 of 20)	URR1B|DNA|hAT-Charlie	54020.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	5.93953838613575	5.88018001709671	6.02321772691548	5.93442323365957	5.50322360294628	5.66054631939302	5.70294533298662	5.70246332403191	-0.502887283938836	0.0442854323836843	0.214668536613884
Merged-chr11-101551992-4	chr11	101551909	101552109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252223)	promoter-TSS (NM_001252223)	-54.0	NM_009764	12189.0	Mm.244975	NM_009764	ENSMUSG00000017146	Brca1	-	breast cancer 1, early onset	protein-coding	6.87932982256812	7.3387053069116	6.66735883755997	6.88491800480231	7.46889921701519	7.25185536014382	6.88681284699634	7.31931766611592	0.39017180582114	0.0931812285805243	0.333931460534344
Merged-chr4-53109003-2	chr4	53108903	53109103	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 6 of 49)	intron (NM_013454, intron 6 of 49)	50892.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	3.47166415549799	3.34978467136173	3.47212475807675	3.81935496477193	3.59362269929239	3.27449936151708	3.56258459838625	3.29470367485867	-0.35926824640461	0.507186295250754	0.772710503440438
Merged-chr1-177442067-4	chr1	177441974	177442174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355101)	promoter-TSS (NM_001355101)	-277.0	NM_001355099	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	9.16852049231871	9.05742052146507	9.49381224118416	9.352773716165	9.173981756954	9.26852782823638	9.51307101100645	9.06845623020537	-0.0165225845310096	0.923170564500898	0.971558056755617
Merged-chr3-126650569-4	chr3	126650475	126650675	+	985.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	53624.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	4.89364774088623	4.61258660039298	4.16884206688865	4.49213236227726	4.59893987858952	4.34994738622864	4.52162029989265	4.65581708351104	-0.0518819309594405	0.893665547644692	0.960319159696255
Merged-chr19-38015750-4	chr19	38015637	38015837	+	992.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 3 of 53)	intron (NM_001302140, intron 3 of 53)	27840.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	6.9869763858401	6.64717536189106	6.68539293339998	6.78581746991991	5.6263602160174	5.99299588785307	5.90983119188347	5.60058781430689	-1.51945955926563	2.9020866391423e-10	2.07189192464905e-08
Merged-chr9-113780256-4	chr9	113780166	113780366	+	969.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 6 of 39)	Lx9|LINE|L1	-13064.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	4.92700972057551	5.39818322589184	5.1481993784876	4.88839975420702	5.70086625251296	5.25642722635888	5.08901095897423	5.70737680864271	0.677379142683873	0.0407669814571946	0.204130380567611
Merged-chr8-125782581-4	chr8	125782452	125782652	+	810.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 25 of 33)	intron (NM_175561, intron 25 of 33)	48349.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	3.30685377373283	2.97412584013737	3.00321407094961	3.11815355945619	2.98972317765987	3.18175789294015	3.29363945861059	3.59459658658812	0.651699000609344	0.265382800849764	0.577001515467012
Merged-chr1-149827194-4	chr1	149827097	149827297	+	961.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95242.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	4.76274121190085	4.87074093808133	4.67365744105749	4.54727345538996	5.92417929418925	5.180362450581	5.32236087126978	5.59583716163991	1.57477232537165	1.92345468365386e-06	6.33254305864006e-05
Merged-chr1-166631938-4	chr1	166631855	166632055	+	907.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164312, intron 8 of 8)	intron (NM_001164312, intron 8 of 8)	15738.0	NM_001164312	226604.0	Mm.330032	NM_001164312	ENSMUSG00000051081	Gm4847	EG226604|Fmo12	predicted gene 4847	protein-coding	4.34992715885978	4.89751505930903	5.30020167292976	5.28553084397534	4.59304317648476	4.48324362848025	5.10983489744415	4.87248405778576	-0.462965639858254	0.260696163635429	0.57252299176491
Merged-chr1-144240162-3	chr1	144240050	144240250	+	726.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	8954.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	4.68208983214115	4.22853055634582	3.72216179683681	3.5300030281603	3.87951465129109	4.01483870030473	3.5850955443809	3.77808686406201	-0.791587699153934	0.149776044587692	0.432202261746095
Merged-chr12-100110691-2	chr12	100110591	100110791	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1640.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	4.01189496619577	4.03564112269495	4.44825293970796	4.04154702864408	4.35125842346879	4.08142233160771	4.27275684297008	4.28947232767259	0.300123063802602	0.464415689441485	0.745452017408793
Merged-chr16-21909114-3	chr16	21909001	21909201	+	856.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172821, intron 7 of 12)	intron (NM_172821, intron 7 of 12)	17132.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	3.51655174748757	3.47702427908424	3.40638490919142	3.88622228894737	3.26086440293715	3.57777263390371	3.39375610514284	3.21921222446233	-0.796496049292007	0.143290616839833	0.421492801720905
Merged-chr10-44003844-4	chr10	44003760	44003960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172393, exon 1 of 20)	exon (NM_172393, exon 1 of 20)	986.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	6.10743748707236	5.98942982873874	5.94337892823834	5.74803393307502	5.73993248364271	5.82403766314127	5.93479842538933	5.98246974237917	-0.113394973360544	0.652698318469361	0.854764223296605
Merged-chr6-42419649-4	chr6	42419555	42419755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14126.0	NM_199159	387512.0	Mm.377919	NM_199159	ENSMUSG00000056203	Tas2r135	Tas2r35|mt2r38	taste receptor, type 2, member 135	protein-coding	6.32338313571802	5.99062199879816	5.7444235443985	5.56995945108457	5.81358588893647	6.4642187503977	6.01598847982746	5.71382238189082	0.160315357731952	0.600798048900727	0.826967246454786
Merged-chr7-44835612-4	chr7	44835507	44835707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010215)	promoter-TSS (NM_010215)	-681.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	5.83784239338589	6.81186660366003	5.8389077396716	4.23215127941445	5.84795539001998	5.9476365518776	5.29052509917589	4.8352040207072	-0.698540118411527	0.400851432292353	0.6985653731059
Merged-chr2-167350620-4	chr2	167350513	167350713	+	870.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1435.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	3.73327743188011	3.63047196838799	3.5214185317382	3.5612919235148	3.61268168632102	3.63742258456092	3.45010951141224	3.87018876192707	0.124562161385321	0.795700061865588	0.920897975671128
Merged-chr12-8641078-4	chr12	8641018	8641218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-33016.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	7.39421530169042	7.48135523078346	7.15561354629387	7.3836434112152	7.56703170848367	7.68618659900159	7.64869555820465	7.07641049469284	0.207237637748623	0.311281518868674	0.62330737422436
Merged-chr15-77523419-2	chr15	77523319	77523519	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9896.0	NM_175391	108956.0	Mm.86391	NM_175391	ENSMUSG00000044309	Apol7c	2210421G13Rik	apolipoprotein L 7c	protein-coding	2.21175137630408	2.16512616781083	2.21192338062359	1.91918557205799	2.70817469035567	2.84907895987742	2.77961478663441	3.19537663369769	6.84452463563127	7.77084990214623e-11	6.05165563659591e-09
Merged-chr2-60881082-9	chr2	60880949	60881149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	CpG	389.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	6.07463536498311	6.07676602959448	5.90212994885017	5.63171177811324	6.15020156051104	6.0778304306226	6.00365203397929	5.89793087178406	0.195415755969246	0.445520350980079	0.731510070411548
Merged-chr17-47924538-4	chr17	47924333	47924533	+	990.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001110824, exon 1 of 17)	5' UTR (NM_001110824, exon 1 of 17)	199.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	3.94119214372014	4.31041176457424	4.51403572261761	4.04213192126892	4.32278651010815	4.45208751185751	3.55161366669137	4.23500462714025	-0.0848724224922575	0.864123390586986	0.948954560889149
Merged-chr3-103781708-4	chr3	103781621	103781821	+	813.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301304, intron 1 of 15)	intron (NM_001301304, intron 1 of 15)	9554.0	NM_001301306	15257.0	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	3.99398844905683	3.83301707012504	4.03888364803924	4.05444290725016	3.96776759302347	3.4846357303951	3.73199447522201	3.84935141927007	-0.582315890286901	0.213572930062196	0.519084463187087
Merged-chr11-83440940-2	chr11	83440843	83441043	+	810.166687	f0_balb.idr|f0_c57.idr	3' UTR (NM_172797, exon 8 of 8)	3' UTR (NM_172797, exon 8 of 8)	3249.0	NM_025492	66330.0	Mm.44800	NM_025492	ENSMUSG00000035085	1700020L24Rik	-	RIKEN cDNA 1700020L24 gene	protein-coding	4.24269366712904	4.34598671465333	4.29048611022778	4.44660270424172	4.50848676546564	4.46406413410464	4.5939067098253	4.33333654776698	0.31322927432287	0.39972186345614	0.697861775510926
Merged-chr1-171735117-4	chr1	171735009	171735209	+	895.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32023.0	NM_013730	27218.0	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	4.19855993016008	4.67388703347928	4.4270201494346	3.41394219705896	4.64201993192792	4.64174458436898	4.56171330147696	4.14601858536596	0.567060946106278	0.263817992080117	0.575887256647185
Merged-chr8-117067174-4	chr8	117067079	117067279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 6 of 42)	intron (NM_029686, intron 6 of 42)	15270.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	6.58267882922315	6.07097737883294	6.87124993208786	6.59130520998739	6.79587469013442	6.55161139635099	7.00356586950288	6.75924847123933	0.332077126934335	0.176298260501348	0.471307205534908
Merged-chr6-53448434-1	chr6	53448334	53448534	+	852.3333130000001	f0_balb.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-124940.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	3.55110264198188	3.71630598934491	3.33670160354601	3.61298564925605	2.96191992199193	3.32699021596527	3.20347676590283	3.27526710514761	-1.39283824781361	0.0138456163213007	0.0992292159940091
Merged-chr5-137025360-3	chr5	137025255	137025455	+	862.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4940.0	NM_001039385	381677.0	Mm.389697	NM_001039385	ENSMUSG00000037428	Vgf	Gm1052	VGF nerve growth factor inducible	protein-coding	3.41108157487177	3.43840647240714	3.28799012013766	3.05601586544409	3.8902230255094	3.7479417102962	3.51010081592393	3.46733561368632	1.26161828441965	0.0158564382637659	0.109037561397713
Merged-chr17-29393689-6	chr17	29393536	29393736	+	950.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32722.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	3.99088120140365	4.83697687161543	3.93753637035972	3.22713539169207	4.73905162210045	4.22328586361968	3.8652629270665	3.87912411392696	0.149605770794272	0.861905101182378	0.947901186692584
Merged-chr6-33867054-4	chr6	33866943	33867143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 14 of 17)	intron (NM_009148, intron 14 of 17)	-162405.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	5.42948364683638	5.84528809173282	5.45897242191507	5.64202438549555	5.35282217596963	5.60504743888565	5.31428810280709	5.09990122956827	-0.45068275008012	0.124184302917706	0.391029659273035
Merged-chr3-82362594-3	chr3	82362488	82362688	+	853.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356457, intron 3 of 13)	ORR1D2|LTR|ERVL-MaLR	4401.0	NM_001356457	213582.0	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	3.48823668641038	3.42355979485538	3.21694540525125	3.58943364189749	3.77348777179376	3.8363666043844	4.26808386745997	3.76390731055396	1.43232608011281	0.00576555066869103	0.0527692080553889
Merged-chr6-48554795-4	chr6	48554705	48554905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177736)	promoter-TSS (NM_177736)	6.0	NM_177736	243371.0	Mm.290764	NM_177736	ENSMUSG00000073096	Lrrc61	BC027309	leucine rich repeat containing 61	protein-coding	7.89847516973002	7.94140752265921	7.82634399003552	7.97924304845796	7.76621556896177	7.79885130362027	7.92413649579385	7.54273094507392	-0.196417720517614	0.24688006565559	0.558168726560377
Merged-chr18-64489089-4	chr18	64488998	64489198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348055)	promoter-TSS (NM_001348055)	0.0	NM_007998	14151.0	Mm.1070	NM_007998	ENSMUSG00000024588	Fech	AI894116|Fcl|fch	ferrochelatase	protein-coding	8.28877316811419	8.03628648318248	8.31191632656247	8.35132540885136	8.16841918998723	8.15730567245349	8.18353904155963	7.68183593671554	-0.240571291405138	0.191923914370729	0.491436517051375
Merged-chr11-95821637-8	chr11	95821532	95821732	+	791.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-2868.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	3.57776490366565	3.67174574757691	3.4629695865577	3.58328587321128	3.64024336582061	3.74956784824439	3.50878380303874	3.82564200769704	0.332085827506163	0.484061058308147	0.758242770560542
Merged-chr2-165884006-3	chr2	165883938	165884138	+	883.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 1 of 11)	intron (NM_001252587, intron 1 of 11)	800.0	NM_001252584	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	3.3873101433249	3.36910409890776	3.32822228230777	3.24311915464756	3.54440575048903	3.44206479042823	3.48506503715556	3.73902588165833	0.788513281499123	0.11289392196743	0.371420623567672
Merged-chr17-26138678-4	chr17	26138613	26138813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009733)	promoter-TSS (NM_009733)	27.0	NM_001159598	12005.0	Mm.23684	NM_009733	ENSMUSG00000024182	Axin1	AI316800|Axin|Fu|Kb|Ki|fused|kinky|knobbly	axin 1	protein-coding	7.45982089557954	7.41111585978118	7.29387741624248	7.03685229156087	7.30599506708082	7.34962849341848	7.26794717854708	7.36034484680546	0.0304571978367649	0.873533987466452	0.952619493264257
Merged-chr6-38254177-6	chr6	38254037	38254237	+	786.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194061)	promoter-TSS (NM_194061)	-128.0	NM_194061	330286.0	Mm.277163	NM_194061	ENSMUSG00000063455	D630045J12Rik	Kiaa1549|mKIAA1549	RIKEN cDNA D630045J12 gene	protein-coding	3.49761461056439	3.64874099645209	3.55443248005437	3.88815757992472	3.47472359678674	3.61344368513136	3.83115849887155	3.24380562006733	-0.348894195844719	0.50878244843615	0.773734128773352
Merged-chr6-135295775-3	chr6	135295675	135295875	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14609.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	5.63006184206535	5.79190160104243	5.69663505778071	6.11896321431532	4.30394568899936	4.32650031255594	4.16826543226253	4.36635612711979	-3.19398714960253	4.25587657790136e-17	9.67824405554124e-15
Merged-chr11-84813928-3	chr11	84813827	84814027	+	810.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145433, exon 5 of 5)	3' UTR (NM_145433, exon 5 of 5)	5588.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	3.13037025951072	3.19224272754564	2.99271435284441	2.81647473116576	3.52938108003549	3.4876216480657	3.3565841457663	3.61659099632682	1.78862969319676	0.00117747024971112	0.0153359844289456
Merged-chr13-12256028-4	chr13	12255929	12256129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081128, intron 1 of 32)	intron (NM_001081128, intron 1 of 32)	2084.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	7.03334631894241	7.06972572438264	7.56416919719674	7.58426981839427	7.21738346444476	7.04767939284206	7.55195719652547	7.32718831303024	-0.0648642547571144	0.773421057724263	0.911370539984361
Merged-chr11-50227291-4	chr11	50227153	50227353	+	903.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145926, intron 1 of 14)	intron (NM_145926, intron 1 of 14)	1918.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	4.18746293756508	4.43835721395299	4.14372873934693	4.14562721379748	4.05598568165859	4.12381161796912	3.82501362193845	3.83756054104191	-0.691995071268884	0.106154598476571	0.359039114514795
Merged-chr12-69448586-2	chr12	69448486	69448686	+	973.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26964.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	3.3216278884135	3.41103773517965	3.60167358987491	2.96468931337446	3.30306372790015	3.61533587849076	3.68156667657404	3.5994662141839	0.74205251229695	0.181675910212323	0.478312892250924
Merged-chr7-46838294-4	chr7	46838171	46838371	+	818.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7533.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	3.97941402559733	3.64503738175721	3.78479603645962	4.06137533805741	3.75180595291255	4.05562095069106	3.76961751303156	3.72895799608664	-0.168355051066801	0.717034836090206	0.886873959096142
Merged-chr18-55391801-4	chr18	55391711	55391911	+	891.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-399220.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	4.69333933714351	4.68195987292912	4.57418690439139	4.64081437790835	4.52216566399677	4.42517632165545	5.16482531544536	4.61242718313627	0.139495230303802	0.710776689453841	0.884203816607274
Merged-chr3-75556915-4	chr3	75556774	75556974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019745)	promoter-TSS (NM_019745)	-22.0	NM_019745	56426.0	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	8.63827344264424	8.69268965848914	8.63504172135644	8.88175728466033	8.86717994052995	9.06637108498753	8.89971839813529	8.70970636843546	0.211038572497227	0.180400066787393	0.476782131065641
Merged-chr6-90422696-4	chr6	90422593	90422793	+	889.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173775, intron 2 of 16)	intron (NM_173775, intron 2 of 16)	5787.0	NM_173775	243538.0	Mm.386876	NM_173775	ENSMUSG00000048794	Cfap100	AW048498|C030041G11Rik|C230069K22Rik|Ccdc37	cilia and flagella associated protein 100	protein-coding	4.06310337531051	3.90478191504535	3.85335639608289	4.3051541641014	4.06827085869096	4.03146380929362	4.41792315690279	4.2832937315645	0.370854312109667	0.398604466866116	0.696793179038619
Merged-chr2-125788493-4	chr2	125788398	125788598	+	950.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5628.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	5.39839612683286	5.60608250227905	5.39934596374207	5.28225448565344	4.84912182022873	4.9479697968405	4.65720760970088	4.72037202102933	-1.19712809888553	0.000178949625131746	0.00331963913663084
Merged-chr5-117134245-4	chr5	117134191	117134391	+	934.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	703.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	3.82900890571696	3.63564930986557	3.513223359266	3.98705243811506	3.81113734021358	3.56638586046595	3.50082844623684	3.73042625730988	-0.310220838694286	0.532790799806439	0.788283197310742
Merged-chr17-35578409-4	chr17	35578322	35578522	+	753.862488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10937.0	NM_175148	69542.0	Mm.265291	NM_175148	ENSMUSG00000039269	2300002M23Rik	Stg|emprin	RIKEN cDNA 2300002M23 gene	protein-coding	3.93869456848424	3.90172769448767	3.49727342173074	3.97055007467324	3.9120959950284	3.96220587706132	3.72231989033714	3.9369033980408	0.104889307496947	0.820883713665075	0.931443689364036
Merged-chr11-85234607-3	chr11	85234502	85234702	+	978.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028329)	promoter-TSS (NR_028329)	518.0	NM_025825	66884.0	Mm.271997	NM_025825	ENSMUSG00000018481	Appbp2	1300003O07Rik|AI465480|PAT1	amyloid beta precursor protein (cytoplasmic tail) binding protein 2	protein-coding	5.16268323301342	4.81050996538681	5.13444193907858	4.23995762720847	4.63312701997677	4.97471899678632	4.73707331021157	5.15993134600556	0.0270062622285626	0.946898432128	0.98101762641852
Merged-chr10-55098495-4	chr10	55098389	55098589	+	833.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-1008428.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	4.08125900526052	4.0385688001352	4.17218424381553	3.86801150616346	4.06577070384019	4.33942537055365	4.06420286581889	3.93130789629869	0.195740345611003	0.643165031482595	0.849459897971419
Merged-chr16-13256492-7	chr16	13256408	13256608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122667)	promoter-TSS (NM_001122667)	27.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	6.08140153711572	6.00064222647623	5.92176402602462	6.08881815144339	6.37778643837701	6.5279231116767	6.28552838868287	6.46477435800863	0.580494768515874	0.00950895366227601	0.0761176127673351
Merged-chr1-131253875-3	chr1	131253800	131254000	+	922.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019777)	TTS (NM_019777)	-8722.0	NM_018750	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	3.59513067745549	3.79533555178134	3.35539710872125	2.91355593515084	3.76424817331602	4.05810199707561	3.58067895598179	3.53748616087059	0.905442204860333	0.12146473220744	0.385992168757419
Merged-chr17-25282305-4	chr17	25282202	25282402	+	953.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31B2|LTR|ERVK	-7992.0	NM_011665	22196.0	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	5.12528691817037	5.04603725874682	4.70663242961598	5.01626155381001	4.83588031205184	4.88275415090892	4.76450962372265	4.85915739062796	-0.303329079333948	0.351366713691019	0.658808615509455
Merged-chr13-44518386-4	chr13	44518269	44518469	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78642.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	5.59660593564307	6.03109428438102	5.67639328130307	5.13093872092143	6.07196065834142	5.99468051195653	5.5958259118397	5.18275013435037	0.201001990877851	0.563567939742597	0.806428731514002
Merged-chr6-97867362-4	chr6	97867266	97867466	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	60308.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	5.53029032312369	6.15836145385313	5.28610802563253	4.75593980689692	5.86715735029028	5.93492437938485	5.77625854308731	5.24831192524546	0.332139312794861	0.392115077443021	0.691774675781771
Merged-chr7-44892582-8	chr7	44892477	44892677	+	932.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029365)	promoter-TSS (NM_029365)	-153.0	NM_001331206	75613.0	Mm.157778	NM_029365	ENSMUSG00000002968	Med25	2610034E13Rik|2610529E18Rik|ESTM2	mediator complex subunit 25	protein-coding	4.12240144365438	3.94942853447025	3.89128331558374	3.65345575215947	4.11566147100699	3.84901127528851	3.77064929977211	4.07739603362898	0.182469130635974	0.688707227452713	0.872951986303452
Merged-chr13-58534723-3	chr13	58534604	58534804	+	637.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76173.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	3.88546582087927	3.51630625990395	3.75900041558632	3.2500450505353	3.47526684202602	3.39201928395824	3.20063236386779	3.20946680491742	-0.979585261890746	0.0850609623613069	0.317424464711936
Merged-chr9-13742646-3	chr9	13742559	13742759	+	898.455566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6522.0	NR_024025	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	3.91539759682404	4.04665784324983	4.01366913296666	4.05899682750815	3.82296557127221	3.75299552268044	3.73989345780546	4.37535720939185	-0.169265783407814	0.713694274049449	0.885468561919243
Merged-chr16-43802240-3	chr16	43802146	43802346	+	794.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007877, intron 2 of 6)	intron (NM_007877, intron 2 of 6)	40025.0	NM_007877	13490.0	Mm.439735	NM_007877	ENSMUSG00000022705	Drd3	D3R	dopamine receptor D3	protein-coding	3.49427996831254	3.41747741031613	3.37852883429963	3.50749540831598	3.35589814895693	3.66593498962061	3.48114635540913	3.78865031483533	0.40261072877125	0.423237415855451	0.715182110086537
Merged-chr4-139252159-4	chr4	139252058	139252258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	58047.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	5.31447124200719	5.3631304035004	5.01608719926566	5.23804861179685	5.67576553063729	5.0382378760706	5.16550338656809	5.45165329534279	0.236486937974827	0.454550211512155	0.738370105894031
Merged-chr9-45388822-4	chr9	45388723	45388923	+	892.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022004, intron 1 of 7)	intron (NM_022004, intron 1 of 7)	-10886.0	NR_028499	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	4.46828220413551	4.24141842482018	4.14683236793053	4.24013943031653	4.67406367348273	4.51431948620572	4.66944691781987	4.33788452144268	0.661350224628878	0.0776338367500869	0.30130973321959
Merged-chr7-80346402-3	chr7	80346302	80346502	+	915.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026812)	TTS (NM_026812)	3265.0	NM_026812	68695.0	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	3.61672378218408	3.57442689261534	3.31711411257687	3.63374444885048	2.84396966138867	3.11072222869279	2.99118671884585	3.06814559651651	-2.29545351340968	0.000230169061700207	0.00407948297877465
Merged-chr1-164184719-4	chr1	164184613	164184813	+	879.5750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007976, intron 9 of 24)	intron (NM_007976, intron 9 of 24)	-32496.0	NR_037987	100503816.0	Mm.398579	NR_037987	ENSMUSG00000086593	Gm16548	-	predicted gene 16548	ncRNA	4.24068449191067	4.02622057443435	4.19868043182971	4.25140574067168	4.26516561384269	4.02915062641821	4.09105444179331	3.79212155719784	-0.308029044561616	0.46931038030051	0.748251025868274
Merged-chr11-78348115-4	chr11	78348005	78348205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011676, exon 4 of 5)	exon (NM_011676, exon 4 of 5)	1395.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	5.79921160638621	6.06785587777549	5.45276735141372	5.83817108325199	5.89233190640573	5.46978471278205	5.56971916042458	5.69904604171347	-0.222226568443892	0.431524932821893	0.721710551668303
Merged-chr2-50296624-4	chr2	50296540	50296740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040361)	promoter-TSS (NR_040361)	161.0	NM_001348200	109129.0	Mm.29214	NM_133839	ENSMUSG00000026766	Mmadhc	2010311D03Rik|AI314967|CblD	methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria	protein-coding	7.96114795724034	8.1578706554605	8.79121022442798	7.96141816216552	7.87504209660983	8.2696371066588	8.14654338455503	8.16780965344368	-0.182519608066328	0.419095605548399	0.712251159515261
Merged-chr7-19683897-4	chr7	19683793	19683993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-2433.0	NM_001309799	105886299.0	Mm.28394	NM_001309799	ENSMUSG00000109350	Gm44805	Apoc4-apoc2	predicted gene 44805	protein-coding	7.57734390785049	7.43182348380495	7.62896502792774	7.52743310480139	7.22168993356348	7.33242390203899	7.24405428980246	7.39925797477333	-0.32545718938023	0.0620256353725367	0.263451646985427
Merged-chr4-133205060-4	chr4	133204919	133205119	+	949.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7517.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	4.9617240073328	5.11501431542046	4.71451770742916	4.85266920143906	4.71643305553789	4.43464072795178	4.87277265276311	4.49962250188547	-0.56254924315587	0.11272774640219	0.371270490847775
Merged-chr2-32447835-4	chr2	32447743	32447943	+	932.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146118, intron 1 of 10)	intron (NM_146118, intron 1 of 10)	-2614.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	5.08491672555965	4.65117207111302	4.51992620191819	4.9738125817321	4.65328539124192	4.65207042061964	4.58500718000527	4.64405310535318	-0.42543057903208	0.23512615639789	0.545095525599075
Merged-chr16-21286296-4	chr16	21286255	21286455	+	943.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046162, intron 1 of 4)	intron (NR_046162, intron 1 of 4)	10517.0	NR_046162	328646.0	Mm.404748	NR_046162	ENSMUSG00000096918	Gm16863	A830060N17	predicted gene, 16863	ncRNA	4.36936211802919	4.45755788634787	4.70168821999855	4.34004356353685	4.10347162832222	4.21410295924865	4.01880085560822	4.32443357801004	-0.733502573214407	0.0667222509205894	0.27539710630772
Merged-chr5-30036123-4	chr5	30036003	30036203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	22989.0	NM_031168	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	6.42481636894059	6.8066551976263	6.62873942812158	6.09800359016239	5.96745677319904	6.47779808709245	5.95400101370925	6.25899349174515	-0.496294459261949	0.0677260433540655	0.277799318092058
Merged-chr6-50291896-4	chr6	50291806	50292006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30137.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	5.23334905487518	5.13571600897152	5.16900195681421	5.47476848828775	5.28718518948989	5.37692830559432	5.53946927571751	5.23064687684453	0.148947270950275	0.616587121326129	0.835088092643374
Merged-chr13-75844424-4	chr13	75844342	75844542	+	713.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053108, intron 1 of 2)	intron (NM_053108, intron 1 of 2)	4556.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	4.35914555722602	4.17354664425244	3.86659197802138	4.15212069847782	4.22774016450554	4.68125650063612	4.1185346485052	4.27233186746847	0.460074566862275	0.274324318394471	0.586071094606358
Merged-chr8-80919279-4	chr8	80919158	80919358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38739.0	NM_001301298	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	5.75025264960439	5.76961203592336	6.1690155945104	6.17853065486799	5.49759262519863	5.59242826322819	5.83948640030704	5.44079866929697	-0.64762920728514	0.0194925547686575	0.125770553047635
Merged-chr7-100502748-3	chr7	100502636	100502836	+	970.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153527)	TTS (NM_153527)	9378.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	4.37722981529088	4.0442152487697	3.8456787440599	4.19464131528179	3.82599705206621	3.65687549174247	4.16352648281918	4.04642920305177	-0.52337011103526	0.253610987396367	0.564898241173811
Merged-chr3-43218952-4	chr3	43218861	43219061	+	753.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1476343.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	3.68161170910075	3.83947458628935	4.13065949653375	4.13450289108273	4.18313017960577	3.73873553348484	3.93365558407087	3.89865880186202	-0.0315604516496507	0.9458721629279	0.980641198659378
Merged-chr10-19012057-6	chr10	19011803	19012003	+	965.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166402)	promoter-TSS (NM_001166402)	60.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	4.73502718410775	4.90683216112553	4.2876048616476	3.73722281779826	4.81305104735238	5.34994549926672	4.74980838802278	4.76999964855331	0.932674543506585	0.042095873915335	0.207934920847997
Merged-chr2-143081910-4	chr2	143081797	143081997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020595)	TTS (NM_020595)	3504.0	NM_020595	57329.0	Mm.157751	NM_020595	ENSMUSG00000027416	Otor	CDRAP|Fdp|MIA|MIAL	otoraplin	protein-coding	7.5595914311932	7.32249957257759	7.4691321099819	7.6746085365151	7.53934772768964	7.54746670099295	7.65734995086699	7.39553041791021	0.023911674577145	0.895257527984538	0.960791502086898
Merged-chr14-16244056-4	chr14	16243947	16244147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359883)	promoter-TSS (NM_001359883)	-716.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	6.67833726716087	6.72926485666061	6.24054253964093	6.3497420634343	6.98566553493672	6.8846972086751	6.74468484216762	6.29746018553645	0.356192813515247	0.152673272611156	0.437010128732436
Merged-chr16-35871438-4	chr16	35871305	35871505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039530)	promoter-TSS (NM_001039530)	-23.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	5.10890358639605	5.36219542560881	4.9985466719419	4.97494588494384	5.84196577997843	5.45169094707558	5.62287050725654	5.27261532161169	0.823321610414688	0.00707734167874595	0.0613889962651058
Merged-chr13-37356203-4	chr13	37356101	37356301	+	929.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	10856.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	4.63013257675169	4.28660368590183	4.33406964857284	4.64985048138441	4.48850563091833	4.36198888676876	4.87575925369703	4.8032571646134	0.339792775757973	0.378576354496369	0.681182628403749
Merged-chr1-13589923-4	chr1	13589811	13590011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028173)	promoter-TSS (NM_028173)	-1.0	NM_028173	72265.0	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	7.8026522099157	7.95698238357337	7.61284615143303	7.73690591582128	8.01154851251743	8.02676612666935	7.90419910385443	7.64302151478358	0.161077440592964	0.369579708192107	0.673760732747822
Merged-chr3-65953956-4	chr3	65953857	65954057	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019937, intron 3 of 10)	intron (NM_019937, intron 3 of 10)	4292.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	5.15864773938191	4.70699790765214	4.59131339297495	5.00795827010438	5.44490163865404	5.23741240638623	4.90127073314388	5.15595123049651	0.600874201692658	0.0799937440866662	0.306352884447692
Merged-chr9-44734538-6	chr9	44734481	44734681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153537, intron 1 of 21)	intron (NM_153537, intron 1 of 21)	617.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	4.87070632542661	5.78369564272804	5.23431310153179	4.32331977904088	5.48620549477246	5.63894949594669	5.35615093418344	5.23064114012585	0.483188453032374	0.24146114954762	0.552034276752374
Merged-chr7-106693145-4	chr7	106693033	106693233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3404.0	NM_146452	258444.0	Mm.271372	NM_146452	ENSMUSG00000064223	Olfr694	MOR283-9	olfactory receptor 694	protein-coding	5.83388109285607	5.66371846187243	5.78827428185924	6.16706552973018	5.37512729387869	5.64313419388337	5.78229749339422	5.76020149464334	-0.423631496632672	0.133321052937594	0.406638366694222
Merged-chr13-4771639-4	chr13	4771525	4771725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-162461.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	8.96281767257516	8.84119561235746	8.90788605861492	9.0732936813727	9.16107633152852	9.27128635611878	9.27068849561055	9.05735160595345	0.296798648770755	0.0415411738915483	0.206441333270021
Merged-chr18-74393128-3	chr18	74393030	74393230	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49489.0	NM_201600	17919.0	Mm.260098	NM_008661	ENSMUSG00000025885	Myo5b	AI661750|mKIAA1119	myosin VB	protein-coding	4.89966963761636	4.55442954500067	4.5367750081639	5.16079966790465	3.81731138907675	4.03865534639456	3.83290155818536	3.7118194859846	-2.50368998057022	5.88661023390641e-08	2.65191791037484e-06
Merged-chr14-65105110-3	chr14	65104983	65105183	+	728.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6977.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	3.09739299502783	2.88056087086611	2.97936361119898	2.91347936999688	2.68775341132969	3.02547012976307	3.24257098120627	3.03832079462443	0.178218948512414	0.772902150341208	0.911052408089747
Merged-chr2-165493340-4	chr2	165493250	165493450	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007581)	promoter-TSS (NM_001007581)	-36.0	NM_001007581	381406.0	Mm.330785	NM_001007581	ENSMUSG00000039725	Trp53rka	2810408M09Rik	transformation related protein 53 regulating kinase A	protein-coding	5.51977888548781	5.26193141093183	5.02831148509231	5.41812434286952	5.21395325110537	5.20701574198778	5.04093172629106	5.7899238810437	0.0353997334051507	0.914410314531047	0.967977569571763
Merged-chr3-95871482-4	chr3	95871323	95871523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040446)	promoter-TSS (NR_040446)	91.0	NM_078479	66292.0	Mm.24108	NM_078479	ENSMUSG00000054312	Mrps21	1810031B19Rik|S21mt	mitochondrial ribosomal protein S21	protein-coding	5.77137670548187	5.58390441428784	5.43122018049707	5.52323143949686	5.70977154016544	5.74812195370506	5.31133605233732	5.74510263921352	0.108435726468802	0.694335199775939	0.875868431105577
Merged-chr1-75234826-4	chr1	75234731	75234931	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1592.0	NM_001159884	56812.0	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	4.70951301254244	4.6734081194583	4.71027343157601	4.84318326830469	4.88842448406681	5.02890002963134	4.90165972555902	4.349812455511	0.155985548169436	0.662930918274707	0.860346663968351
Merged-chr11-16978493-4	chr11	16978376	16978576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 9 of 9)	intron (NM_019549, intron 9 of 9)	27066.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	5.97869748835787	5.92440661417	6.1445291591341	6.21108296138872	6.08712687927507	5.91558713805464	6.07409048093804	5.67964357391027	-0.191903988988249	0.444443179814251	0.730820363989155
Merged-chr8-117362532-4	chr8	117362443	117362643	+	906.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	13373.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.29987111456974	4.67027254978474	4.24934059576635	5.2527379874733	4.69928464128373	4.08756102584168	4.55057678369199	4.89109757037786	-0.231573510637691	0.625687768140564	0.840045074099841
Merged-chr6-123266047-4	chr6	123265940	123266140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163161, intron 2 of 5)	L1ME3A|LINE|L1	3933.0	NM_010819	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	6.79385305201891	6.77560726744556	6.43307606926625	6.24504837435188	6.77426878844759	6.9292071541824	6.58539126677964	6.77647568317955	0.289067095314244	0.215625089223807	0.521847629814001
Merged-chr13-111804358-4	chr13	111804219	111804419	+	786.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	4674.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	2.97947206163771	3.07294530705676	3.2922401991607	3.17429857621053	3.42741116911597	3.22408918613869	3.33305766517653	3.39681152909243	0.787838882136814	0.14599081463663	0.425880335861505
Merged-chr1-184729439-4	chr1	184729331	184729531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008250, intron 3 of 3)	intron (NM_008250, intron 3 of 3)	3062.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	6.21510694313742	5.90462534878481	5.85684741905684	6.26047256677487	6.0443351559592	5.87875853277494	6.00790422537015	6.17457724986752	-0.0813591773118702	0.745291872804771	0.899471958747455
Merged-chr11-32647448-4	chr11	32647366	32647566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	4911.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	5.68889244398162	5.37561992833882	5.29196018933636	5.25720697108324	5.75420251524074	5.68183770534385	5.79847263939501	5.75691259255868	0.594535684370207	0.0279566316158942	0.159977987101765
Merged-chr7-131801539-3	chr7	131801459	131801659	+	898.3444820000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164901.0	NM_173410	233919.0	Mm.208740	NM_173410	ENSMUSG00000040125	Gpr26	9630036A11Rik|A730021D22	G protein-coupled receptor 26	protein-coding	4.44754237130416	3.9606738433283	3.98522810494577	4.26077174007164	3.93973672244325	4.29986922989951	3.91747270928395	3.76285036708997	-0.498270153785318	0.269089306150955	0.580620459637407
Merged-chr5-63943474-3	chr5	63943376	63943576	+	833.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145923, intron 1 of 6)	MER44B|DNA|TcMar-Tigger	25421.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	4.37616119760967	4.33479856951408	4.48707375343735	5.1154516371464	3.28706351210309	3.45389398703526	3.31739364172885	3.48022924552729	-4.27647844586301	2.67642137648898e-10	1.92235113175691e-08
Merged-chr12-35038151-2	chr12	35038051	35038251	+	643.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-9038.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	3.19151876852257	3.01764446325724	3.2430864072429	2.78288235211142	2.75607136296431	2.87126690929671	2.82469941297674	3.02343529871367	-0.845256526692031	0.184403156356082	0.481798343290737
Merged-chr19-6276723-4	chr19	6276618	6276818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010119)	promoter-TSS (NM_010119)	-178.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	8.75654902014344	8.95798090754921	8.62807768053128	8.2902335366425	8.73373095759138	8.91105721872354	8.75460685168342	8.55702742756432	0.0857158449018116	0.649381295434301	0.85269354452399
Merged-chr7-19303331-6	chr7	19303223	19303423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008036, exon 4 of 4)	3' UTR (NM_008036, exon 4 of 4)	6722.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	4.69130201424834	4.93953639552965	3.70089167365886	3.18678352584649	4.64982811966365	4.72610450605884	3.87815491397658	3.89203115164865	-0.0168201274704032	0.986661012700991	0.995137687953634
Merged-chr7-109703697-4	chr7	109703589	109703789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020616)	promoter-TSS (NM_020616)	-48.0	NM_020616	57373.0	Mm.334138	NM_020616	ENSMUSG00000031023	Akip1	BCA3|C11orf17|D7H11orf17|D930014E17Rik|ICRFP703B1614Q5.6|ORF27	A kinase (PRKA) interacting protein 1	protein-coding	7.45337848734227	7.53761301636476	7.61207943414947	7.55481672824293	7.83235713403411	7.7270126379958	7.92757971974887	7.58934356456094	0.310309351385329	0.0709568083172094	0.285685539861454
Merged-chr11-51890521-4	chr11	51890431	51890631	+	971.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-32901.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	5.30977121526577	5.55977424710621	5.7477424886181	6.14404941305184	5.3817796186297	5.07865523295981	5.43664996916136	5.69662605841886	-0.559008433823551	0.0881730537700832	0.323952387264951
Merged-chr12-52284426-4	chr12	52284323	52284523	+	913.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 7 of 10)	intron (NM_029760, intron 7 of 10)	186677.0	NM_029760	76826.0	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	3.60818932313506	3.49311730228758	4.16408804812888	4.26442229238094	4.02758853878237	3.96003870699203	4.01691550700527	3.88850456826213	0.0990370274700317	0.845485288775398	0.94153555929146
Merged-chr13-23700955-4	chr13	23700860	23701060	+	932.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2502.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	5.39230072221434	5.36069062113794	5.29415924521216	5.71897132246101	5.46810817721594	5.99602288826917	6.34731513028784	5.72337701956649	0.745777063344914	0.0191692525924218	0.12432181257885
Merged-chr5-115279803-4	chr5	115279781	115279981	+	993.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026504, exon 1 of 7)	exon (NM_026504, exon 1 of 7)	179.0	NM_026504	52064.0	Mm.290142	NM_026504	ENSMUSG00000041733	Coq5	1810014G04Rik|D5Ertd33e	coenzyme Q5 methyltransferase	protein-coding	4.37518342557749	4.48262371158788	4.15298456233208	4.000534324842	4.24248714473587	4.37433515813816	3.98234958552747	4.45220013073414	0.0403559110785119	0.923390238594958	0.971661765008416
Merged-chr4-148084396-4	chr4	148084288	148084488	+	959.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301281, intron 1 of 4)	intron (NM_001301281, intron 1 of 4)	3676.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	5.36831451646635	5.1234561703339	5.31015931800387	5.33114224248241	5.47277019399114	5.06657766131699	5.64384718274243	5.3655042978782	0.219863200886779	0.459369459850715	0.741926863078079
Merged-chr13-90089623-4	chr13	90089520	90089720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025335)	promoter-TSS (NM_025335)	-12.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	9.18402326283193	9.07422798303038	9.39676791432028	9.57426770342539	9.18047969001169	9.06487287786359	9.50875974210394	9.1016884933127	-0.121606304439942	0.498770956643462	0.767833862179825
Merged-chr5-65486029-4	chr5	65485977	65486177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133697, intron 1 of 4)	intron (NM_133697, intron 1 of 4)	6758.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	6.43322300062904	7.24173137229546	6.798574892232	6.21512316849062	6.22601611012448	6.4029248294607	6.36578588600553	6.35735218857455	-0.570645754437556	0.0423961692546436	0.20901211603936
Merged-chr7-62463743-2	chr7	62463643	62463843	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013788, exon 1 of 1)	exon (NM_013788, exon 1 of 1)	767.0	NM_013788	27412.0	Mm.422745	NM_013788	ENSMUSG00000070526	Peg12	Frat3	paternally expressed 12	protein-coding	3.47214515345037	3.22744854501567	4.06888245977105	3.1704321693236	2.58655352351544	2.7826853265306	2.74673903771747	3.36484025242928	-2.47805705360984	0.141032555329823	0.417785760605188
Merged-chr12-110703303-5	chr12	110703180	110703380	+	966.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6885.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	3.82456842495507	3.69074017871494	4.1299107929935	4.10507148749644	4.28349219962322	4.05741480170835	4.27898184221336	4.21466644162474	0.655907116635669	0.129283967442939	0.400152346767879
Merged-chr2-73029928-4	chr2	73029834	73030034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-49488.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	7.28031738523948	7.29795792097308	8.13542992370595	7.76523095421089	7.45625956403795	7.34329453511648	7.65747852461896	7.48140265173087	-0.240173205640432	0.305811136181157	0.618267130463788
Merged-chr11-17538451-3	chr11	17538365	17538565	+	633.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	280777.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	3.16072789375157	2.89202587660628	3.21355952818885	3.4015735162276	2.78418061875999	2.74711164678401	2.97901966465583	2.79096285687284	-1.60287743028221	0.0144270885799492	0.102021985842266
Merged-chr1-66817638-4	chr1	66817431	66817631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122738)	promoter-TSS (NM_001122738)	64.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	7.25967743626752	7.46953083761059	7.75342295055688	7.50885000258139	7.70624343340144	7.999295989653	7.86970866229597	7.96985742683963	0.494250300058889	0.00767859338987935	0.0652992352327625
Merged-chr8-73208346-3	chr8	73208237	73208437	+	780.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317391, intron 3 of 15)	intron (NM_001317391, intron 3 of 15)	145203.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	2.47987343907968	2.33838417623868	2.39313581603709	2.03993203278473	2.8819544676217	2.90462566304356	3.27940220505187	3.54944929550353	6.48046457599727	1.06670533627521e-10	8.1032037492778e-09
Merged-chr17-27133898-4	chr17	27133792	27133992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026063)	promoter-TSS (NM_026063)	-1.0	NM_026063	67267.0	Mm.272389	NM_026063	ENSMUSG00000024208	Uqcc2	2900010M23Rik|Cbp6|M19|Mnf1	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding	6.06139814319648	6.16788808184479	5.90400017044587	5.83059772413151	6.09407898547648	6.57043109657778	5.96631955497137	6.25460535686316	0.377826583608937	0.140189067246336	0.416257200797887
Merged-chr11-116531774-4	chr11	116531656	116531856	+	848.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172475)	promoter-TSS (NM_001172475)	-155.0	NM_001172475	20698.0	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	3.84485534282361	4.369741601067	4.05069842050728	3.77553854820705	3.96246092051173	3.91088046115844	3.77409320849167	4.4848894902313	0.0901246980126321	0.851754381871882	0.944100387750672
Merged-chr1-172482105-4	chr1	172482002	172482202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145800)	promoter-TSS (NM_001145800)	-111.0	NM_001145800	93842.0	Mm.214530	NM_033608	ENSMUSG00000037995	Igsf9	644ETD8|Dasm1|Kiaa1355-hp|NRT1|Ncaml|mKIAA1355	immunoglobulin superfamily, member 9	protein-coding	6.18366019288884	6.19093025236924	6.60376310666029	6.08770018854361	6.09056986820814	6.38040969075054	6.48186706500447	5.70363070602053	-0.119863481885686	0.663662891903359	0.860703683820224
Merged-chr15-89373600-4	chr15	89373443	89373643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001271601)	TTS (NM_001271601)	275.0	NM_001111288	100126824.0	Mm.287977	NM_001111288	ENSMUSG00000091780	Sco2	-	SCO2 cytochrome c oxidase assembly protein	protein-coding	5.70684115765436	5.52918580695857	5.11884835331765	5.68705631663123	5.56844164734312	5.8576220805227	6.00323501427329	5.93041901809891	0.498013694562963	0.085642075730424	0.318707445413073
Merged-chr12-84020742-4	chr12	84020627	84020827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11225.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	6.39938045979043	6.24807392155562	6.45022439241691	5.96926625473651	6.28487731107826	6.45161302389073	6.06476192686067	6.17480965335954	-0.0167653673895461	0.94580272368357	0.980637693555381
Merged-chr9-113026818-4	chr9	113026704	113026904	+	979.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	560348.0	NR_040760	102688.0	Mm.394901	NR_040760	ENSMUSG00000109890	AU023762	-	expressed sequence AU023762	ncRNA	5.39683858878235	5.14841921383082	5.63984635504977	5.98377342281815	5.57386436836517	5.24200001269241	4.99830703355499	5.70709366242875	-0.310681765651972	0.370933168953774	0.675068605253279
Merged-chr8-115429705-4	chr8	115429600	115429800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	277194.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	6.5956396913117	7.17671885777489	6.58000323617098	6.97792233959262	7.16481212862351	6.79103062271007	6.88395222878662	6.64116737580031	0.0361105748447636	0.880425022601156	0.95517036814656
Merged-chr7-114291625-4	chr7	114291579	114291779	+	945.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15563.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	4.47443568428961	4.39555782350896	4.66969200220991	4.36003912583735	4.27320247133476	4.42395861849478	4.53528759551988	4.80285206713679	0.104095673334136	0.784727321340325	0.916241189783762
Merged-chr11-75760859-4	chr11	75760755	75760955	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009536, intron 5 of 5)	intron (NM_009536, intron 5 of 5)	27968.0	NM_009536	22627.0	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	5.12398948605886	5.14553139698073	5.44905370130778	5.18300456182234	5.23406977489225	4.87367246178833	5.3138954140449	5.39220792808422	-0.010156057738638	0.973733173025361	0.990573976844078
Merged-chr4-129276657-4	chr4	129276548	129276748	+	863.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10973.0	NM_023485	68828.0	Mm.132243	NM_023485	ENSMUSG00000001333	Sync	1110057H03Rik|SNIP4	syncoilin	protein-coding	4.4057736119049	4.2202963363278	3.95673890455375	4.12725770600958	4.82534278084848	4.44813490823817	4.57989696444125	4.44520188485748	0.957117306102338	0.0137323677862687	0.0986630965329011
Merged-chr13-49323188-2	chr13	49323088	49323288	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13980.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	3.11399300897829	2.9568435333335	3.17465454437764	2.93423534452858	3.17687835337196	3.34570473377476	3.21946165524557	3.33827454266333	0.897862732031226	0.101731774148466	0.350047264556928
Merged-chr6-131278339-4	chr6	131278232	131278432	+	986.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	14912.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	5.90834322461915	5.36243896003738	6.10445808979464	5.49114230834694	5.72200038682983	5.77537280224983	5.20061541652168	5.74791817876788	-0.176889256938936	0.577169596249027	0.813924639099529
Merged-chr6-24684715-1	chr6	24684615	24684815	+	719.0	f0_balb.idr	Intergenic	Intergenic	-19720.0	NM_028459	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	2.8762641451026	2.72458899650807	3.09027601138777	3.00631546240317	2.73532936563925	2.57230291775177	2.61280635342702	2.61887389050528	-1.44468337752033	0.0356273699210455	0.187417366699489
Merged-chr7-45704908-4	chr7	45704817	45705017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016974)	promoter-TSS (NM_016974)	-330.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	8.38624350498866	8.63977639285466	8.52031457034808	8.3418908760982	8.643082683972	8.69818272325185	8.52376459119046	8.40877634977359	0.12548674241691	0.435256104073404	0.724494615589096
Merged-chr17-25016393-4	chr17	25016287	25016487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134126, exon 1 of 30)	5' UTR (NM_134126, exon 1 of 30)	301.0	NM_134126	106633.0	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	5.63871183594842	5.94187425824657	5.52519486005199	5.75816367054321	5.69825603986241	6.01656103366509	6.13717805029969	5.88352097871774	0.329826178445972	0.214302011708595	0.520075107105561
Merged-chr11-85838110-3	chr11	85837989	85838189	+	832.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009324, exon 6 of 7)	exon (NM_009324, exon 6 of 7)	5474.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	2.78011199890688	2.6275972318382	2.83859660422901	2.50134693474992	2.48840763899976	2.54778315666996	2.64670988281755	2.83695134282265	-0.26170850336639	0.701305791878323	0.879658083204691
Merged-chr13-54575151-4	chr13	54575029	54575229	+	851.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019968, exon 1 of 4)	exon (NM_019968, exon 1 of 4)	116.0	NM_019968	56795.0	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	4.06334235880389	4.16344329549566	4.34681082511854	4.18858331430318	4.15872579092207	4.2920668069579	4.24025758205794	4.76998626912207	0.458800988706138	0.264348935647314	0.576455127446606
Merged-chr13-54590864-4	chr13	54590756	54590956	+	910.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178605)	promoter-TSS (NM_178605)	625.0	NM_025933	67044.0	Mm.29353	NM_025933	ENSMUSG00000025868	Higd2a	2010110M21Rik|AA690237	HIG1 domain family, member 2A	protein-coding	4.47235527169047	4.35379416711314	4.20111550416398	4.0524548545006	4.64484742057529	4.60410031286854	4.67421684714857	4.34149095892703	0.723038393617388	0.0581950179275419	0.253518915196976
Merged-chr4-16088542-4	chr4	16088481	16088681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74693.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	7.82214539934249	7.49341070509782	7.91764255924781	7.86360953001239	7.79760258227967	7.74280819535904	7.84419866404112	7.8478932836145	0.0305627753720531	0.861693755240325	0.947809474991843
Merged-chr7-121072612-4	chr7	121072510	121072710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030691, intron 1 of 5)	intron (NM_030691, intron 1 of 5)	1920.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	7.10163999354622	7.28749526291069	7.46697720206232	6.94994344944672	7.57194156136083	7.32739744769588	7.13731403640738	6.99742993857603	0.104454052833183	0.637282162650092	0.846715828034101
Merged-chr15-77538111-4	chr15	77538009	77538209	+	770.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	-4794.0	NM_175391	108956.0	Mm.86391	NM_175391	ENSMUSG00000044309	Apol7c	2210421G13Rik	apolipoprotein L 7c	protein-coding	3.81051519784241	3.77202365928583	3.86886569563309	3.5413659121209	4.82129678740987	4.471619669477	4.01119418010647	4.21319970317465	1.77891202464137	7.77126103626208e-05	0.00163847923370882
Merged-chr11-101143821-4	chr11	101143695	101143895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12089.0	NM_134028	103768.0	Mm.142348	NM_134028	ENSMUSG00000045007	Tubg2	AI504772|Tubgl	tubulin, gamma 2	protein-coding	5.34599451577555	5.92804265158291	5.10883358432153	5.12636614771381	5.65244503775688	5.64047463984099	5.51968412171773	5.54382822892696	0.296926954537212	0.35579571436835	0.662494654381061
Merged-chr2-13479808-3	chr2	13479711	13479911	+	838.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 6 of 66)	intron (NM_001081084, intron 6 of 66)	12065.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	3.38248177760263	3.10653123318473	3.57405915750501	3.62852114945152	2.97596876607479	3.06917937764319	2.95112758546635	3.02760034446523	-1.77796238026207	0.00364090523788027	0.0371869699995809
Merged-chr6-121147054-4	chr6	121146953	121147153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16031.0	NM_001270475	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	6.3906078857697	6.84150400374802	6.56683252706058	6.91863455007945	6.2875493897692	6.45259896894202	6.79648574454545	6.95213732488711	-0.092481196741121	0.714788876500269	0.886003030420421
Merged-chr14-52307454-4	chr14	52307354	52307554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-2330.0	NM_019721	56335.0	Mm.271759	NM_019721	ENSMUSG00000022160	Mettl3	2310024F18Rik|M6A|Spo8	methyltransferase like 3	protein-coding	5.62527870162247	6.14279399646376	5.45985025626491	5.00842828172533	5.69909746416117	5.82683613566342	5.54494544514014	5.51387681958181	0.0575225045753854	0.866281052516144	0.949874431032359
Merged-chr13-48966148-4	chr13	48966056	48966256	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033268, intron 1 of 17)	intron (NM_001033268, intron 1 of 17)	1672.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	4.0326731175768	4.58783335226131	4.87022915045615	4.70570038967657	4.91710526808965	4.48946605742991	4.90873731373895	4.30715402830994	0.215244403101245	0.614045288089038	0.833609107549057
Merged-chr2-164497465-4	chr2	164497386	164497586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133779)	promoter-TSS (NM_133779)	-39.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	5.7026598533899	5.96598096198513	5.39013313287277	5.63040152733872	5.62529192912656	5.85328421384577	5.98448547851592	5.64809364438575	0.150451467319823	0.587004116518162	0.819013564908904
Merged-chr1-80627014-4	chr1	80626925	80627125	+	814.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 3 of 55)	intron (NM_175291, intron 3 of 55)	38327.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	4.12482819860536	4.0258064129876	3.99215286035633	3.95039810692099	3.8589457493789	4.01609589244325	3.82776224112863	3.67316358138524	-0.480807150076425	0.27236564896445	0.583838924250549
Merged-chr3-55452096-3	chr3	55451988	55452188	+	651.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 5 of 16)	intron (NM_001357475, intron 5 of 16)	-9640.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	3.55482808648689	3.60902100469618	3.31189551298269	3.44964713879322	3.56398725655464	3.72749501726668	3.74395257297328	3.8045412193769	0.706933274217945	0.14155065214162	0.418641038300926
Merged-chr9-78442751-2	chr9	78442651	78442851	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173386, exon 1 of 5)	exon (NM_173386, exon 1 of 5)	486.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	5.03838082537087	4.80854091034933	5.50786053073853	4.67725866213472	4.47203797176243	4.91991264034878	4.87440665587539	5.50387014783836	-0.0904044381376267	0.826597866686666	0.933488045260841
Merged-chr15-36283221-4	chr15	36283103	36283303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013923)	promoter-TSS (NM_013923)	-56.0	NM_001357631	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	7.63603022195057	7.76990967206908	7.65467126156255	7.84033599861513	7.92231507125401	7.88275084382775	8.02413895308454	7.60562836340362	0.175828229016486	0.318960400203711	0.630823985405764
Merged-chr1-184536640-4	chr1	184536543	184536743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040472, intron 2 of 5)	intron (NR_040472, intron 2 of 5)	21048.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	7.08291608675481	6.7002585053378	6.65649191459123	6.66682054103924	6.39340974990752	6.5110749933659	6.42905743497949	6.26916975021124	-0.550621412024367	0.0131498835229305	0.0957435846393692
Merged-chr16-4541960-4	chr16	4541855	4542055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	17765.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	8.84629545911246	8.89330186123376	8.73519626673262	8.70667209836712	8.75418934747485	8.7893757392325	8.63979122811581	8.47400757937666	-0.155466249933055	0.311711543300541	0.623665218229603
Merged-chr1-87036421-2	chr1	87036321	87036521	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172157, intron 15 of 21)	intron (NM_001172157, intron 15 of 21)	53507.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	2.88945034957677	2.944709896599	3.30714618739558	2.86903700620526	3.08204355181723	2.64324257022457	2.53352780443559	2.68909539122306	-1.12227055825231	0.128040724021807	0.398226457010757
Merged-chr10-5787170-1	chr10	5787070	5787270	+	597.0	f1_c57bl6.idr	Intergenic	Intergenic	18295.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	2.94476286366554	2.71973932211751	2.886911980099	2.28326692100975	2.3195494408622	2.411186488403	3.03992531273045	3.05248978363083	0.040777447270564	0.961278530930735	0.986118879213657
Merged-chr6-87806234-4	chr6	87806135	87806335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	3522.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	6.58744793680811	6.66860531529662	5.90205510972032	6.48636476996142	6.51588390111179	6.42901804678202	6.80693565245183	6.77160083753464	0.277017020058612	0.27157697355656	0.583247666197459
Merged-chr5-66147538-4	chr5	66147435	66147635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	B3A|SINE|B2	3443.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	6.8400506933455	6.33803217719126	6.36006845421157	6.43143400641117	6.48542274048524	6.42234505692072	6.64764465848125	6.02225832895217	-0.127641160992382	0.609483915178171	0.831031894356171
Merged-chr13-91132998-3	chr13	91132879	91133079	+	760.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 3 of 7)	intron (NM_025770, intron 3 of 7)	91008.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	3.53238243521001	3.01287417461887	3.23344077147471	3.40940811452594	2.76952402615127	3.09630578861086	3.10439307365285	3.1139884270202	-1.16521992305234	0.0595291125330504	0.257144234797305
Merged-chr15-82354358-4	chr15	82354248	82354448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025987)	promoter-TSS (NM_025987)	-57.0	NM_025987	67130.0	Mm.27570	NM_025987	ENSMUSG00000022450	Ndufa6	14kDa|2700038D15Rik|B230217P19Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	protein-coding	8.22472910631049	8.09856270162508	7.8872245098442	8.13750394874841	8.09913777242319	8.00354182368654	8.32709490943074	7.71397222476246	-0.0487800184486661	0.795599180838302	0.920897975671128
Merged-chr4-149806909-3	chr4	149806798	149806998	+	774.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32631.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	3.44234625514033	3.59785645618312	3.32019970634035	3.21387398126213	3.69791591647619	3.43501704661374	3.94500627815959	3.49817522595648	0.871658285611156	0.0914874528926176	0.330490530320931
Merged-chr11-98217138-4	chr11	98217023	98217223	+	967.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026952, intron 2 of 12)	intron (NM_026952, intron 2 of 12)	13818.0	NM_001109626	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	4.41115157812733	4.98948232444501	4.15581906824916	4.39614246805403	5.06195796525471	4.63438590817862	4.4814613195108	4.7721464750591	0.503454987814982	0.223032978074402	0.531122928951417
Merged-chr2-79966906-4	chr2	79966824	79967024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	-58525.0	NM_001009978	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	7.71588780005517	7.28440440382642	8.26463783440461	8.24617184959398	7.66605594216378	7.55531180290397	8.0361158908881	7.965675447596	-0.159615293363245	0.523323992216528	0.782464816143387
Merged-chr9-44199786-3	chr9	44199689	44199889	+	866.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	intron (NM_007619, intron 2 of 15)	34257.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	3.69830569387882	3.46221224118906	3.79026902280435	3.99750843277014	3.50732558567278	3.14382000515114	3.1005327731135	3.37535687371932	-1.55304784168159	0.0077949400357911	0.0659576838810716
Merged-chr9-104306972-4	chr9	104306859	104307059	+	790.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019807, exon 9 of 11)	exon (NM_019807, exon 9 of 11)	30763.0	NM_019807	56318.0	Mm.19941	NM_019807	ENSMUSG00000032561	Acpp	5'-NT|A030005E02Rik|FRAP|Lap|PAP|Ppal	acid phosphatase, prostate	protein-coding	3.66562082473174	3.86873555662097	3.66608713571872	3.7203062965994	4.59152362533509	3.90410996571357	3.87299463462256	4.12080461130965	1.17779000694196	0.0121907130322183	0.0909098300892492
Merged-chr19-28827916-3	chr19	28827821	28828021	+	827.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5a|LINE|L1	-7245.0	NM_009199	20510.0	Mm.246670	NM_009199	ENSMUSG00000024935	Slc1a1	D130048G10Rik|EAAC1|EAAC2|EAAT3|MEAAC1	solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	protein-coding	3.64592626913429	3.76424972414906	4.29642702258755	4.23599493400208	3.62875505237875	3.76543215788161	3.94879833498227	3.86571008211296	-0.616870922303213	0.207001598139263	0.511049184276
Merged-chr10-78471124-4	chr10	78471003	78471203	+	967.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6155.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	5.27108345655042	5.32225193135426	5.41297734417051	5.38149984864098	4.78286683197304	4.99137517030064	4.7879450120251	5.58288106264131	-0.50922808831099	0.136678924271184	0.411151599640715
Merged-chr15-101081254-3	chr15	101081155	101081355	+	680.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26856.0	NM_001214911	668225.0	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	3.71808779576537	3.56549021873531	3.57420705514781	3.38364265631033	3.48369310570077	3.26797848627002	3.2789163033463	3.5201437187755	-0.543680977817935	0.297251941719672	0.609392164736881
Merged-chr17-29492466-3	chr17	29492315	29492515	+	951.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008842, intron 4 of 5)	intron (NM_008842, intron 4 of 5)	1370.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	4.28849666569748	4.590039553668	4.28913437640096	4.00506088878698	4.95716326001516	5.26572856699607	4.91968660342985	5.03387338155611	1.61274386171389	1.0002852332346e-05	0.000275219569448804
Merged-chr7-139273533-4	chr7	139273425	139273625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25043.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	6.10491658167056	5.51822983186194	6.08587219394116	6.49086669448306	5.94022131669808	5.8619527433067	6.11377187757011	5.90789479163614	-0.238114920969413	0.416707953795329	0.710660934978501
Merged-chr3-144719706-2	chr3	144719606	144719806	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 1 of 10)	CpG	629.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	6.27726375211227	6.86436336487647	6.80116026137349	6.61890698725037	7.01263346316241	6.53781437546407	6.82036599285515	6.88933974521813	0.246305784073088	0.2860364752458	0.597615363323773
Merged-chr17-78373399-4	chr17	78373312	78373512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 16 of 16)	intron (NM_015800, intron 16 of 16)	44740.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	5.52542915681904	5.78791214132464	5.95429609511275	6.24529827067266	5.80380540564419	5.64432964949475	5.96559454961541	5.69032352669525	-0.228746820438368	0.421917409866714	0.714309708855546
Merged-chr10-7050032-3	chr10	7049940	7050140	+	918.666626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26855.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	3.52621394373988	3.29805296415668	3.57474447850729	3.58916818790702	3.27504986672682	3.16898934036666	3.05084876816904	3.25318133631864	-1.14560770357969	0.0385254184363603	0.196912304960627
Merged-chr12-100116169-4	chr12	100116058	100116258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008947, intron 5 of 9)	intron (NM_008947, intron 5 of 9)	3827.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	8.15887838001202	7.96418598307483	8.32131484082453	8.3575245591567	8.20338684111189	7.91014759316104	8.21025126498646	8.39428888843925	-0.0261027658930592	0.88592501944489	0.95718457248159
Merged-chr11-116619451-6	chr11	116619361	116619561	+	834.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	4791.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	3.78115024564635	4.0390856827292	4.57723197944021	3.82118489279306	3.95609911388582	3.84384230338815	4.02582790892368	4.041070472979	-0.312645984664279	0.511070174143605	0.775140082837974
Merged-chr4-12490633-3	chr4	12490529	12490729	+	823.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-318614.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	3.8910216496408	4.06442981892104	3.93810393929684	4.2121623001042	3.4948854876594	3.68867070035254	3.2953887879605	3.68464288737108	-1.52455681165854	0.00223306478614078	0.0254478575748823
Merged-chr10-95680472-7	chr10	95680388	95680588	+	747.31427	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21B|LTR|ERVL	-116342.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	4.32523486507605	4.10424363283506	4.01454683472033	4.09357838889738	4.01871447890995	4.08584291407711	4.22516653898189	4.06153353830289	-0.099360402595637	0.807860572425968	0.925894979224023
Merged-chr5-101763632-3	chr5	101763524	101763724	+	811.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1506.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	3.10425229578339	3.24153123864596	3.16366857046148	3.17727949991826	3.13596409808608	3.08553666985786	2.96891029465896	3.27231154244525	-0.207209264578878	0.710621936995896	0.884197177759025
Merged-chr3-146781362-4	chr3	146781262	146781462	+	982.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164200)	promoter-TSS (NM_001164200)	54.0	NM_001164200	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	5.09172799495657	4.91740220444013	5.23990412996192	5.29466635207944	4.84122957230433	4.78298577093445	4.75214270054741	4.73050444953525	-0.739575759419692	0.0230204233076374	0.140486370719648
Merged-chr13-44731816-2	chr13	44731716	44731916	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001205044, exon 2 of 19)	5' UTR (NM_001205044, exon 2 of 19)	545.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	2.89178152908801	2.78414790644708	2.77449672877209	2.60733649908228	2.65852041509922	2.81776317615162	2.56817391578306	2.71007840105265	-0.350026457912753	0.590820608097155	0.821283214886845
Merged-chr9-96393321-4	chr9	96393230	96393430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-28899.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	6.71438528337101	6.89653596160842	6.58413054243249	7.11126000594964	7.02211853369992	7.09397388672618	7.39588173394866	7.00193878210286	0.383030445042014	0.0837367769521018	0.31462121220434
Merged-chr4-133805303-5	chr4	133805218	133805418	+	905.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4a|LINE|L1	-51707.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	4.69578812164256	4.24689375303355	4.39005249632097	4.46956561567053	4.39697323611058	4.16997114763822	4.60454005569344	4.38729833457508	-0.134053115416509	0.729172992039977	0.892476699180608
Merged-chr13-5870974-4	chr13	5870875	5871075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011803)	TTS (NM_011803)	9486.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	5.49227813163358	5.72821192197576	5.11913585176373	5.55659782907661	5.47095980237899	5.46409190947865	5.23059456135181	5.31615171212071	-0.216363517156276	0.464772473452166	0.745554240368249
Merged-chr18-12121413-4	chr18	12121308	12121508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001289666, exon 1 of 15)	exon (NM_001289666, exon 1 of 15)	129.0	NR_110356	338363.0	Mm.271567	NM_178801	ENSMUSG00000049411	Tmem241	6030446N20Rik	transmembrane protein 241	protein-coding	7.09407261335993	7.29243823387029	7.79036647596526	7.24447965170638	6.39542365122771	6.71328089754969	6.46322101294292	6.94247497397013	-1.0248802822596	2.31001803195563e-05	0.000579164401185522
Merged-chr13-113508501-4	chr13	113508420	113508620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-5676.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	6.41777375850126	6.08140240927361	6.54874236361715	6.72376478337524	6.26481503181115	6.1750070138658	6.31607010581143	6.32582126805733	-0.304622855977405	0.210595902906367	0.515129270474392
Merged-chr19-21472551-4	chr19	21472456	21472656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010266, exon 1 of 14)	5' UTR (NM_010266, exon 1 of 14)	105.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	5.53840742256516	5.71041797477516	5.89380975656249	5.90840279988093	5.32622976505327	5.30390579090295	5.59084570352279	5.42118772283004	-0.634348422838954	0.0216515533008466	0.134939149357779
Merged-chr11-51855641-4	chr11	51855550	51855750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 1 of 12)	G-rich|Low_complexity|Low_complexity	1831.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	5.53723597192188	5.76234911500358	5.95016380749249	5.9292393529701	5.69449992814148	5.43147133509772	5.7436060894319	5.66991880389023	-0.280052909941263	0.295399862986956	0.607379595804165
Merged-chr6-13691871-4	chr6	13691787	13691987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13921.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	6.58895707469931	6.63680786769045	6.81131533946451	7.19465298138169	6.70639092681328	6.53909225237788	6.47354213801787	6.43134834869999	-0.430968585631293	0.0703303031562266	0.284060794648701
Merged-chr14-47648407-4	chr14	47648309	47648509	+	949.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347524)	promoter-TSS (NM_001347524)	-902.0	NM_001347527	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	5.28377969166454	5.48749759247868	5.28470107887711	5.29134724957121	4.71809726984014	4.82705417682831	4.79433433763815	4.64215398572788	-1.16700395696103	0.000225155042135534	0.00401042284714924
Merged-chr5-125348246-4	chr5	125348153	125348353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7159.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	5.1140990815994	5.25915517197188	5.31567217602448	5.51973616330205	5.69922309025422	5.49074206509159	5.5644046388979	5.34257305838811	0.365900227169166	0.210010876145878	0.514484230514723
Merged-chr4-139086214-3	chr4	139086117	139086317	+	721.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008675, intron 1 of 3)	intron (NM_008675, intron 1 of 3)	6753.0	NM_008675	17965.0	Mm.9404	NM_008675	ENSMUSG00000041120	Nbl1	D4H1S1733E|DAN|Dana|NO3	neuroblastoma, suppression of tumorigenicity 1	protein-coding	3.83460796496724	3.67937624924769	3.41097308783297	3.51243103794696	3.64751571957559	3.64574689246809	3.45952376630581	3.91858184865863	0.201824614644789	0.684291731915652	0.87068468799904
Merged-chr9-44605208-7	chr9	44605113	44605313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357703, exon 1 of 14)	intron (NM_001110826, intron 1 of 13)	321.0	NM_181324	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	4.83274417607101	5.26384276047283	4.91434747095332	4.7332513384986	5.08624808433244	5.40099518370289	5.20032630380608	5.84125141417022	0.85918057145372	0.0131141631597852	0.0955721326456797
Merged-chr4-129461477-4	chr4	129461371	129461571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133889)	promoter-TSS (NM_133889)	-208.0	NM_133889	100383.0	Mm.17918	NM_133889	ENSMUSG00000040859	Bsdc1	1110063F24Rik|AW011758	BSD domain containing 1	protein-coding	8.87277979764195	8.75598989945125	8.5544762974799	8.62789388327519	8.67363145878095	8.81138183162354	8.43104864736361	8.36883081835873	-0.153586133145212	0.371014845243273	0.675114800970702
Merged-chr13-112464014-4	chr13	112463919	112464119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010560)	promoter-TSS (NM_010560)	-51.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	7.83014038753472	7.83166163972258	7.43154930837136	8.04290896918945	7.88117612577659	7.95460693279257	8.22520814921801	7.90711524291203	0.239799082982141	0.221295642953857	0.529412246489853
Merged-chr5-76905023-4	chr5	76904930	76905130	+	943.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173765, intron 1 of 15)	RSINE1|SINE|B4	484.0	NM_173765	231326.0	Mm.39271	NM_173765	ENSMUSG00000055923	Aasdh	A230062G08Rik|A830035E16|Acsf4|U26	aminoadipate-semialdehyde dehydrogenase	protein-coding	4.20960388064689	4.03426793116635	3.8753658987775	4.19522472661417	4.31480238463568	4.20116443315595	3.74777483851895	3.92664650955601	-0.0410326000329198	0.927023972690926	0.973253478748155
Merged-chr11-8545979-4	chr11	8545878	8546078	+	885.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 7 of 30)	intron (NM_001083587, intron 7 of 30)	118557.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.04733002075103	4.94856543963702	4.54604508575688	4.81275821952976	4.96543121125399	4.67709693983998	4.52618537124122	4.58621016465492	-0.288707184948452	0.424908925552534	0.716567599871949
Merged-chr12-80435844-3	chr12	80435778	80435978	+	915.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177267, intron 1 of 8)	intron (NM_177267, intron 1 of 8)	723.0	NM_177267	320808.0	Mm.220310	NM_177267	ENSMUSG00000049106	Dcaf5	9430020B07Rik|AI325023|AI430035|AI848110|AW124614|BCRG2|BCRP2|Wdr22	DDB1 and CUL4 associated factor 5	protein-coding	4.16449264854008	3.32863029462823	3.948847617087	3.52857605050552	3.37422035626184	4.25330723690215	3.61615833960215	4.12197323316387	0.299791145306077	0.605413882429021	0.828850276728959
Merged-chr17-17583858-1	chr17	17583758	17583958	+	901.0	f1_balb.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	40631.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	3.02345303982157	2.98592040437602	3.08624563082842	3.13891074379	3.054628624249	3.13312234387075	3.13406728114207	3.40580012107239	0.472081347370375	0.402619392949283	0.700086968024978
Merged-chr9-114844884-2	chr9	114844784	114844984	+	966.0	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_027294)	promoter-TSS (NM_027294)	-732.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	4.63665108305279	4.65701299273099	4.47566494999186	4.7739676628104	4.5944406699165	4.36796535742498	4.27267504346681	4.7432387068171	-0.303154482265176	0.414927830750283	0.709392742895644
Merged-chr16-8739750-4	chr16	8739667	8739867	+	814.145874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1425.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	4.1217042203272	3.74354403121406	3.94118329348707	4.05001745449826	3.80148258992097	3.72842937628985	3.92449983174459	4.11972356080742	-0.206489361059255	0.645457596375958	0.850934142345746
Merged-chr17-63422110-4	chr17	63422002	63422202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 4 of 8)	intron (NM_015794, intron 4 of 8)	78478.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	6.14669735191209	5.56397876495433	6.0667792140052	6.14490210255547	6.12563565640995	6.28279745817544	6.07666599039063	6.08317159337819	0.210365360601324	0.413092920447742	0.708041345226108
Merged-chr13-44305341-4	chr13	44305229	44305429	+	879.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-88842.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	4.7038106141927	4.55354694433346	4.35117218345684	4.47118899986358	3.958356583101	4.48100991973191	4.71505328998529	4.20542587214669	-0.370774454091769	0.373485305456487	0.677113210162732
Merged-chr4-97767080-5	chr4	97766969	97767169	+	862.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-10557.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	3.35862399425501	3.50556428128498	3.48149013643864	3.28143636175194	3.97205695086093	3.53781979981356	3.52484551147448	3.92048244413552	1.14606214229182	0.0214937839751153	0.134284557872933
Merged-chr16-38729804-4	chr16	38729715	38729915	+	979.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12444.0	NR_152434	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	5.18241729340936	5.02841696235554	5.24271419247671	5.0305330012972	5.05000931227951	5.08872638616257	4.85212584503724	5.11744498959197	-0.160656995806474	0.601607802573445	0.827133488921953
Merged-chr4-126251893-4	chr4	126251792	126251992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	4427.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	6.54739960132094	6.33367777837615	5.82224739656455	5.95864588583829	6.41026494097817	6.17303268666155	6.390295219915	6.16380148437339	0.16003303904979	0.542740089687679	0.793917205662524
Merged-chr12-116485757-4	chr12	116485651	116485851	+	947.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011215)	promoter-TSS (NM_011215)	31.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	4.46610260320052	4.37213942669103	4.46678089725848	4.78543688901353	5.35462992353383	5.0320795153201	5.54735958467883	5.12106726981129	1.42730792820039	7.57146465689872e-05	0.00160014632664309
Merged-chr6-30026865-4	chr6	30026746	30026946	+	809.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F-int|LTR|ERVL-MaLR	-21142.0	NM_001164228	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	3.83193844787849	4.12038823318512	4.18100157413332	4.25526631543759	3.8640808087016	4.0644212501058	4.36110724475782	3.99107076243441	-0.0978795144028238	0.823554953194709	0.932316257397365
Merged-chr4-43476910-2	chr4	43476834	43477034	+	892.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6775.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	3.00829307833942	2.80120951049137	2.94314693981864	3.27546057514407	3.1356712161484	3.24131783673422	3.32962820688583	3.06951440361257	0.634408243395517	0.299231835540309	0.611513718688592
Merged-chr8-90822517-4	chr8	90822414	90822614	+	856.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-6321.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	3.87844211180939	4.05375520306348	4.04092053959283	3.98239543256105	4.14073294345952	4.31190749095892	4.29473174684595	4.57029723053668	0.861642814749581	0.0337642269092789	0.181162664493861
Merged-chr9-123940247-4	chr9	123940145	123940345	+	946.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28447.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	5.18968835220943	5.51238185822104	5.24698114000845	4.50788489164877	5.0387476142872	4.79888822465506	4.59651557902564	4.36940500515878	-0.843964562849858	0.0426624803674654	0.209888905866452
Merged-chr17-33092624-4	chr17	33092490	33092690	+	859.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024950, intron 1 of 3)	intron (NM_001024950, intron 1 of 3)	3223.0	NM_001024950	240068.0	Mm.121392	NM_001024950	ENSMUSG00000067424	Zfp563	D10628|D130054H01|NTfin7|Zfp413	zinc finger protein 563	protein-coding	4.28880651042331	3.91884566367508	4.04348163739759	3.95010850770195	3.96499479128305	3.53251069596237	3.88354373368946	3.94709573794101	-0.560144971109235	0.225570612368241	0.534003745560216
Merged-chr11-80287362-2	chr11	80287262	80287462	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13550.0	NM_139228	246104.0	Mm.194148	NM_139228	ENSMUSG00000017692	Rhbdl3	AI847581|Rhbdl4|Rhomr1|Vrho	rhomboid like 3	protein-coding	3.51801536038828	3.23068631595233	3.51853793950287	3.23255138854745	2.95992249642603	3.27210572796179	3.45025071956315	3.95673580704071	0.276319001205237	0.649334052286994	0.852690827261032
Merged-chr13-42103801-4	chr13	42103721	42103921	+	964.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	51800.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	4.64955428980989	4.7427021555792	4.4508282232126	4.42810630949799	4.40769067766326	4.44291819411244	4.15072522064161	4.90735827514521	-0.144034978647039	0.718998630385485	0.887712867262946
Merged-chr11-121735205-4	chr11	121735101	121735301	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32774.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	5.26543817882016	5.27256726219045	5.00367465791319	4.97094374789483	5.29022449787489	5.14340422328612	5.26929048896143	5.23270839947941	0.212791679909182	0.477716527909536	0.753900974794894
Merged-chr8-70302551-4	chr8	70302475	70302675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021538)	promoter-TSS (NM_021538)	-123.0	NM_001024922	234374.0	Mm.388127	NM_001024922	ENSMUSG00000057788	Ddx49	R27090_2	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	protein-coding	5.81139852793061	5.88638144032538	5.56349204170698	5.44338568121146	5.83196718532842	5.65468097525123	5.26254458849273	5.69005982063246	-0.0741654140808724	0.799207698534005	0.922468780793149
Merged-chr14-56812904-4	chr14	56812805	56813005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152252, exon 1 of 1)	non-coding (NR_152252, exon 1 of 1)	916.0	NR_152252	100503842.0	Mm.297636	NR_152252	ENSMUSG00000100017	2410022M11Rik	-	RIKEN cDNA 2410022M11 gene	ncRNA	6.21014570665933	6.09987247477104	5.58312607497965	5.70031794259198	6.27727671435848	6.56300945393211	6.21666524896202	6.36750378164997	0.683333284392864	0.00889907667143483	0.072572882917722
Merged-chr15-88743564-4	chr15	88743451	88743651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-8160.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	5.22716333825769	5.15129454666718	5.40242732416252	5.15510616339923	5.01417709655496	5.0906228456907	5.2022443651766	5.57520235940759	0.0043902101435325	0.988759244766251	0.995492522898152
Merged-chr6-71804254-4	chr6	71804141	71804341	+	780.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178608, intron 6 of 6)	intron (NM_178608, intron 6 of 6)	19543.0	NM_025430	66223.0	Mm.28579	NM_025430	ENSMUSG00000052962	Mrpl35	1110066C01Rik	mitochondrial ribosomal protein L35	protein-coding	4.42533300039472	4.22867174594654	3.83576660372088	4.08048761816036	3.77559087597991	4.26804263744003	4.12372577568178	3.99553386801214	-0.290611197117804	0.515962796144607	0.777920536992964
Merged-chr6-50685229-4	chr6	50685157	50685357	+	810.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30864.0	NM_021892	60531.0	Mm.157158	NM_021892	ENSMUSG00000029831	Npvf	Rfrp	neuropeptide VF precursor	protein-coding	4.07750436305153	3.74015442068345	3.78307109506604	3.78879193944269	4.11411925058476	4.24634501788124	3.87293084093106	3.78099665677868	0.468395864888186	0.295399603513784	0.607379595804165
Merged-chr9-60826899-3	chr9	60826801	60827001	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357408, intron 1 of 19)	intron (NM_001357408, intron 1 of 19)	32459.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	3.19776718888712	3.18135767195604	2.93187157120301	3.03437512534542	2.54341767905917	2.62281125754066	2.6627864995971	2.59515945963461	-2.63978962502444	0.000437488411630757	0.00691999725588126
Merged-chr14-17414439-4	chr14	17414339	17414539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-246521.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	6.88836479019556	6.65208363421408	7.06103384769216	7.03779984368518	6.86579440998574	6.80398013204429	6.74512571850918	6.67016899503351	-0.208022897577269	0.314852495631428	0.626803278913516
Merged-chr4-140700472-4	chr4	140700395	140700595	+	840.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173867)	promoter-TSS (NM_173867)	-978.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	4.0284582682646	3.78215902209852	4.02904806475735	4.0158438462701	4.31454703114033	4.15242113205781	4.14831648888564	4.0266626899565	0.525935864926851	0.204925675504851	0.508442303630846
Merged-chr7-16310200-4	chr7	16310105	16310305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133234, intron 1 of 3)	CpG	622.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	7.01728965030819	7.38814285879636	7.28326394763476	7.04652520266369	7.10980174306775	7.30583096674448	7.39308484537206	7.01356759617653	0.0302130219088042	0.881151748913825	0.955322489265647
Merged-chr5-149241186-4	chr5	149241133	149241333	+	957.3875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23771.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	4.17825619007469	4.32056748166798	3.84830994547026	4.26813718511705	4.52843683584947	4.82813630718413	4.20828044214853	4.22421945453578	0.703132250961114	0.0996416710714109	0.346218223703981
Merged-chr17-72836501-4	chr17	72836374	72836574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027166)	promoter-TSS (NM_027166)	-154.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	9.43709273285014	9.65787816234607	9.71677277429958	9.53194744840745	9.51634233523887	9.71960819631859	9.66529341480718	9.50582757075919	0.0171253499546188	0.905466683371081	0.964896278987056
Merged-chr1-79669783-3	chr1	79669666	79669866	+	989.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183027, intron 1 of 4)	intron (NM_183027, intron 1 of 4)	2206.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	4.48743276979681	4.77603782307858	4.40410506199743	4.79519056018952	4.19806686423547	4.12594906218497	4.19988142619731	4.56397241390744	-0.829793419824963	0.0363370808208664	0.189591818270565
Merged-chr3-106556713-4	chr3	106556658	106556858	+	841.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025582, intron 3 of 6)	Lx3A|LINE|L1	-8956.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	4.01828558342969	3.81292956613387	3.78948751892817	3.71868030565064	3.62338294643088	3.56011482730293	3.7738722904953	3.9302573139112	-0.314901430260255	0.500895539063834	0.769036602800789
Merged-chr10-78429417-3	chr10	78429304	78429504	+	935.177795	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3734.0	NM_007793	13014.0	Mm.6095	NM_007793	ENSMUSG00000005054	Cstb	AA960480|Stfb	cystatin B	protein-coding	4.1714495380294	4.89142353506061	4.06459205203756	3.57298560912143	4.68104213818238	4.85117717745138	4.42974617425156	4.36147881288715	0.725387810774754	0.146894398158677	0.427572829088733
Merged-chr11-23821126-4	chr11	23821034	23821234	+	941.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50164.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	5.06446234658634	4.96712562679726	5.00261683552681	5.10891194708165	4.63100698337748	4.62905136826121	4.91262846483097	4.44500255698206	-0.773474904827156	0.0220738286697354	0.136856643118891
Merged-chr3-32401346-4	chr3	32401250	32401450	+	864.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34801.0	NM_008839	18706.0	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding	4.17969113035204	4.27477063383052	4.22589912146136	4.31120299390379	4.28871401181226	4.04685858127554	4.11560308003854	4.35081089524471	-0.106296333339212	0.7879036884935	0.917845514766764
Merged-chr2-168229527-8	chr2	168229445	168229645	+	949.212524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132310, intron 1 of 11)	intron (NR_132310, intron 1 of 11)	834.0	NM_010072	13480.0	Mm.422657	NM_010072	ENSMUSG00000078919	Dpm1	AI118379|AI194292	dolichol-phosphate (beta-D) mannosyltransferase 1	protein-coding	3.39188751024438	3.11541168121179	3.44673467764916	3.34297841994635	3.35600890348385	3.44903779500808	3.53372326390506	3.33381809528853	0.314821028101598	0.544142129910781	0.795111936790103
Merged-chr11-4135227-4	chr11	4135153	4135353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027859)	promoter-TSS (NM_027859)	93.0	NM_027859	71673.0	Mm.240586	NM_027859	ENSMUSG00000003581	Rnf215	0610009J22Rik|AW557025|C77903	ring finger protein 215	protein-coding	6.72362410390382	6.91061123115028	7.13163413546778	6.64157923173547	6.7165380158219	6.96003845904142	6.8321707802843	6.9147901837196	-0.00140646117522288	0.994761640484543	0.998113036482228
Merged-chr6-124809653-4	chr6	124809515	124809715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009415)	TTS (NM_009415)	697.0	NM_001306053	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	6.01343604312647	6.33856667266994	5.70190810995663	6.17575456069911	6.41234410044324	6.60081241853148	6.39279992374219	6.59252125082843	0.612781332889128	0.0123713579976641	0.0917401671475209
Merged-chr12-34714400-3	chr12	34714308	34714508	+	955.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-185519.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	3.94224200953271	4.09935778601781	3.636707285466	4.03697260306065	3.56827652384354	3.42784099149137	3.87972518168577	3.74491668681913	-0.834262501635914	0.0889004851378074	0.325381910896163
Merged-chr16-94544773-5	chr16	94544691	94544891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18162.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	4.51793655850954	4.58687029501238	4.56301029868618	4.32397561358262	4.87062771712439	5.28914087804475	4.6655861593829	4.96758187945933	0.99114671861587	0.00513036938043163	0.0484017200808787
Merged-chr2-84882790-2	chr2	84882690	84882890	+	884.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_199223, intron 1 of 2)	intron (NM_199223, intron 1 of 2)	3902.0	NM_199223	269295.0	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	2.72489396641759	2.86055348571531	2.65671713240037	2.79805593581315	2.73375937875836	2.89667827090706	2.90139952751399	3.02112665895602	0.560360286915676	0.366103733727906	0.670687642534067
Merged-chr13-99093513-4	chr13	99093408	99093608	+	801.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5587.0	NR_045495	69603.0	Mm.390632	NR_045495	ENSMUSG00000100410	2310020H05Rik	-	RIKEN cDNA 2310020H05 gene	ncRNA	4.02244844808167	4.23370112114595	4.02301602580259	3.91855143433649	4.40343393544656	4.39024045633784	4.44311875709668	4.26001774843944	0.824941064815225	0.0354662546882797	0.186941094672472
Merged-chr1-39313908-4	chr1	39313807	39314007	+	637.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008719, intron 7 of 20)	intron (NM_008719, intron 7 of 20)	-53944.0	NM_053257	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	3.52211261900946	3.19400064313372	3.23904674396809	3.44046603503134	3.49100462636306	3.5306953168213	3.45673096081994	3.35827952735719	0.344750597400296	0.504210351277659	0.770626277304553
Merged-chr14-104467978-3	chr14	104467881	104468081	+	762.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011143)	promoter-TSS (NM_011143)	18.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	3.49530130576674	3.41195050541554	3.78095853528609	3.49844356972909	3.23963856472212	3.43862956466119	3.31314931586786	3.32330385819779	-0.783171151197047	0.134128875491977	0.407802101554934
Merged-chr14-16364201-2	chr14	16364101	16364301	+	919.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1005.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	3.56965271219708	3.60105578112783	4.11523192534917	3.55916723666932	3.87184433155527	4.28200089492084	3.55696567537919	3.74059728024902	0.462765911660961	0.366051614703148	0.670655432077881
Merged-chr15-12824753-4	chr15	12824648	12824848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029998)	promoter-TSS (NM_029998)	-67.0	NM_026799	14000.0	Mm.293142	NM_026799	ENSMUSG00000022191	Drosha	1110013A17Rik|AI874853|Etohi2|Rn3|Rnasen	drosha, ribonuclease type III	protein-coding	8.96466258578312	9.04250290614289	9.28486120659586	9.41518635280571	8.91933264523458	8.71908853723751	9.01363307598498	8.67147940942017	-0.438064298906087	0.0111717996835702	0.085358257801293
Merged-chr19-3423174-4	chr19	3423077	3423277	+	916.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8633.0	NM_010253	14419.0	Mm.4655	NM_010253	ENSMUSG00000024907	Gal	Galn	galanin	protein-coding	3.86895035133314	4.04312511411628	4.07910757973205	4.17762082157625	4.34105746217832	3.99106386032433	4.24012883322398	4.37671313137254	0.486631763770948	0.241051867643781	0.551619163882296
Merged-chr8-84815742-4	chr8	84815665	84815865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033145, exon 2 of 2)	non-coding (NR_033145, exon 2 of 2)	7058.0	NM_201227	23863.0	Mm.304252	NM_201227	ENSMUSG00000053226	Dand5	Cerl-2|Cerl2|Cerr2|Dte|GREM3|coco	DAN domain family member 5, BMP antagonist	protein-coding	6.59556739317808	6.2975384414775	6.05296176392808	5.98636572289969	6.13303502541859	5.96497544431424	6.27786762234918	6.26941658852606	-0.114948935143269	0.654280739845358	0.855598239894931
Merged-chr17-71206259-4	chr17	71206153	71206353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164885, intron 1 of 19)	intron (NM_001164885, intron 1 of 19)	1599.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	5.38673179894519	5.61125857177753	5.2378049596828	5.33759334173027	5.37378496596924	5.3481057839912	5.04371660512595	5.1690214365426	-0.27741618654872	0.349742941269609	0.657241936178407
Merged-chr15-13172448-4	chr15	13172349	13172549	+	917.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007666, intron 1 of 11)	intron (NM_007666, intron 1 of 11)	1226.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	4.65561936874452	4.54085038191463	4.33834343674511	4.15763648166636	4.22904945050954	4.4676243160396	4.6338194042089	4.24221845119451	-0.058848112196098	0.883500949750636	0.956233773318642
Merged-chr8-10711635-2	chr8	10711535	10711735	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	170819.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	3.21990611558613	2.95332635125221	2.94822387357928	2.99388743215383	3.02021177209055	2.78389467632574	2.74456315219137	2.88469130834243	-0.706647617499601	0.257765583482833	0.569608784519116
Merged-chr16-45738083-4	chr16	45737957	45738157	+	848.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073572, intron 1 of 4)	intron (NR_073572, intron 1 of 4)	4898.0	NM_001272070	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	4.2494874071439	4.4706104459884	4.64915004000745	4.90535466991242	4.16671744670652	3.93362302218266	4.23155859072219	4.09912715006052	-1.18401068051131	0.0051080422768698	0.0482547446173271
Merged-chr12-113144725-3	chr12	113144672	113144872	+	904.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024223, intron 5 of 6)	intron (NM_024223, intron 5 of 6)	4167.0	NM_001347443	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	3.00919043853979	2.90684859587506	2.95070957480517	3.05702744193378	2.99173471265168	2.71100471707587	2.99836317762762	2.94926260431909	-0.276958024968543	0.647563974921941	0.851667779256884
Merged-chr13-112363349-4	chr13	112363224	112363424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 8 of 11)	intron (NM_001168403, intron 8 of 11)	74806.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	6.27476745967337	6.25480484192046	6.34651020491069	6.32656966389659	5.67949622449189	6.21285711660831	6.06950146331738	6.05390871691674	-0.461229162674967	0.0576918860981091	0.252099623093947
Merged-chr4-46575040-4	chr4	46574938	46575138	+	989.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	-8598.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	4.93570630167962	4.95483614587327	4.93652066123234	5.12814351230817	4.98976731276937	4.9218482294547	4.91296161182961	5.03539379609665	-0.072170202730101	0.817428244503352	0.92985353132348
Merged-chr16-43953197-4	chr16	43953089	43953289	+	900.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027801, intron 12 of 15)	MTD|LTR|ERVL-MaLR	25861.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	4.22273297857295	4.09528808166659	4.6209448547326	4.29751383278242	4.37005725555801	4.03178446131924	4.49284949863221	4.22080150273256	-0.0592586693471392	0.885539161998541	0.957045685546015
Merged-chr13-100848870-4	chr13	100848758	100848958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15431.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	5.38832811333984	5.56173733249616	5.45103416366123	5.32633086487754	6.06624512218222	5.79553361084989	5.89363994346907	5.71776418398228	0.764539691244682	0.00359461792161302	0.0368145768406465
Merged-chr9-95845275-4	chr9	95845179	95845379	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033210)	promoter-TSS (NM_001033210)	0.0	NM_001033210	102502.0	Mm.11869	NM_001033210	ENSMUSG00000049493	Pls1	AI427122	plastin 1 (I-isoform)	protein-coding	4.99925556833924	4.83130428700346	4.62892293774208	4.53593139957118	5.0641637314207	5.00121990094459	4.72970874136392	4.93067585368032	0.398072985644385	0.244292914642985	0.555437511354735
Merged-chr18-73746700-4	chr18	73746587	73746787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053255, intron 2 of 3)	intron (NM_053255, intron 2 of 3)	7792.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	5.42942993292814	5.0062894283465	5.59299251188447	5.90455654364071	5.24609821285326	5.57640042911505	5.40320384023008	5.58902828582249	-0.14837440598984	0.651467781967484	0.853974682369494
Merged-chr13-21402652-4	chr13	21402552	21402752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145778, intron 1 of 5)	CpG	103.0	NM_001145778	72739.0	Mm.296071	NM_023685	ENSMUSG00000021327	Zkscan3	2810435N07Rik|AA408594|AI132359|Skz1|Zf47|Zfp-47|Zfp306|Zfp307|mszf35	zinc finger with KRAB and SCAN domains 3	protein-coding	6.32313855198338	6.68192792770655	7.25563124230442	6.61201260474544	6.22396550505709	6.64811615303064	6.32992467628948	6.43127678781155	-0.504214161443964	0.0580608743699379	0.253030101638363
Merged-chr4-135762632-4	chr4	135762511	135762711	+	932.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001085509, exon 2 of 37)	exon (NM_001085509, exon 2 of 37)	2896.0	NM_001085509	242702.0	Mm.318639	NM_001085509	ENSMUSG00000037139	Myom3	8430427K15Rik|Gm434	myomesin family, member 3	protein-coding	5.07519870181205	4.64694869460996	4.35718310493587	4.57946842023675	4.55240555891163	4.75185750194613	4.33831477262901	4.4915608002729	-0.315824483828177	0.414788781503751	0.709240191185152
Merged-chr14-63121985-4	chr14	63121891	63122091	+	934.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007798)	promoter-TSS (NM_007798)	-471.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	4.58726255672429	4.05590279538919	4.02373205984386	4.30683819173952	4.48799652710577	4.35199865507061	4.338189759067	4.22256703022985	0.226379864776378	0.578249961020611	0.814598063672125
Merged-chr5-112994462-3	chr5	112994362	112994562	+	805.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	21076.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	3.99869050342389	3.7519703873463	3.4400366364298	4.22055455160514	3.6493712280361	3.92369172893857	4.10959896754857	3.90259442008852	0.0162920693670294	0.974654131243813	0.990956839329839
Merged-chr13-58127447-3	chr13	58127354	58127554	+	918.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029872, exon 1 of 1)	exon (NM_029872, exon 1 of 1)	1102.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	3.79107698046965	3.7480687942982	4.25235930828195	3.81137128993772	3.86123626688496	3.96771544766163	3.83022016058071	4.24951706990203	0.206252234715814	0.653227168044978	0.854997557892684
Merged-chr2-26911340-1	chr2	26911240	26911440	+	1000.0	f0_balb.idr	promoter-TSS (NM_011513)	promoter-TSS (NM_011513)	533.0	NM_013721	27176.0	Mm.328601	NM_013721	ENSMUSG00000062647	Rpl7a	Surf3	ribosomal protein L7A	protein-coding	3.86761134209851	4.00261030157176	4.38018141393322	4.02308099557593	4.34163181760061	4.04667651544296	4.15387586756677	4.29833085416942	0.366029784445282	0.382724221799488	0.684713528902895
Merged-chr2-166979251-4	chr2	166979131	166979331	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	RSINE1|SINE|B4	-14514.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	5.12816456681668	5.34855435589152	5.38411580517697	4.62262698055567	4.89020231111199	4.77359202436502	5.10362456338042	4.95792027695702	-0.395353624662383	0.274682232455492	0.586413323654043
Merged-chr9-31145710-4	chr9	31145625	31145825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-13926.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	6.37347752205092	7.03763712770528	6.68556706908556	6.64185972540277	6.48417848299638	6.45617378291672	6.53029549938096	6.12536907717004	-0.432429662745185	0.0736221085814625	0.292332258547357
Merged-chr13-69536044-3	chr13	69535914	69536114	+	884.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-2150.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	3.10799094243228	3.24645035462759	3.27939624013731	3.34777047693059	2.9328511692356	3.27925126059288	2.8321269252685	3.16628674636216	-0.768799402704947	0.196365177695333	0.49739576360827
Merged-chr7-45103832-4	chr7	45103735	45103935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010189)	promoter-TSS (NM_010189)	-13.0	NM_010189	14132.0	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	7.86692485665984	7.90115846780831	8.02508923783458	8.06887899464848	7.51525746055378	7.54326396236441	7.92774711881326	7.49375937607553	-0.444218977090504	0.014827125719515	0.10396808014869
Merged-chr6-134090516-4	chr6	134090424	134090624	+	972.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	54824.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	5.00870085996748	4.64996549931007	4.73961349169238	5.32851278932799	5.27414003389909	4.91936584845403	5.55671417651919	4.9346630130445	0.42149878944622	0.256773077027097	0.568480006866985
Merged-chr7-34811830-3	chr7	34811709	34811909	+	672.033325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175140, intron 1 of 3)	CpG	902.0	NM_175140	68947.0	Mm.29380	NM_175140	ENSMUSG00000060402	Chst8	1500011J21Rik|AI426009	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	protein-coding	2.90934571945931	2.89370430463044	3.10967188920436	2.94430076298156	3.34424581187487	3.15765779028398	3.37253928720344	3.48128898404235	1.47347804422439	0.00821266600011927	0.0683626889512911
Merged-chr3-52630394-4	chr3	52630273	52630473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109351.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	5.27936272132797	5.56074501164289	5.56522905663431	5.94854339343757	4.95279597246561	5.17728460914757	5.65757267650005	5.10640381220984	-0.67029589260025	0.0443290366277165	0.21472794113475
Merged-chr7-92837380-4	chr7	92837261	92837461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029494)	TTS (NM_029494)	36886.0	NM_001355126	74041.0	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	7.1290331314718	7.29906713322211	6.9976409914404	7.32259459968198	7.04215516861551	6.89164987785765	7.02411092693664	6.90042297147948	-0.320927338390022	0.0968402486557574	0.340882847488658
Merged-chr2-31061382-2	chr2	31061282	31061482	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	35118.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	4.32430522184023	4.67462044084953	5.04470478977698	4.57156677646074	4.37149079095169	4.59379488362941	4.3531834070348	4.41544198893432	-0.538775104536552	0.165332196285299	0.455989631098548
Merged-chr19-57358549-4	chr19	57358463	57358663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040316, intron 1 of 2)	ORR1E|LTR|ERVL-MaLR	2336.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	6.97059398383117	6.87928749136637	6.70177086662861	6.88077570826592	6.67553904542662	6.59353689433724	6.83608114928113	6.69701250376149	-0.227024973249667	0.255957447152522	0.567546030680332
Merged-chr6-124779821-3	chr6	124779706	124779906	+	888.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302555)	promoter-TSS (NM_001302555)	-79.0	NM_001302555	16977.0	Mm.3207	NM_013588	ENSMUSG00000030125	Lrrc23	4921537K05Rik|B7|Lrpb7	leucine rich repeat containing 23	protein-coding	3.96548755801465	3.59257926454946	3.46593422142396	3.49530774313	3.46705093138831	3.70078755392267	3.51229753249956	3.87817274066103	0.0235238801741621	0.962983961815521	0.986785288222419
Merged-chr14-47507455-3	chr14	47507320	47507520	+	785.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027414, exon 3 of 6)	non-coding (NR_027414, exon 3 of 6)	34859.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	2.7675998155926	2.77219613503908	2.76785654202714	2.42302185845738	3.91731609628589	3.34202331317109	3.63882980091457	4.08647325008789	5.24312475109461	5.18570120031218e-12	4.96119658248684e-10
Merged-chr12-106683855-3	chr12	106683761	106683961	+	983.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32463.0	NR_015512	71033.0	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	3.65617158449554	4.0119588562141	4.30860336963432	4.44202448890367	3.63744078518089	3.6484582866938	3.70163678315842	3.87661206042166	-1.22330829036146	0.0136138938300646	0.09810907653439
Merged-chr2-25429177-2	chr2	25429077	25429277	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007379, intron 1 of 47)	intron (NM_007379, intron 1 of 47)	503.0	NM_007379	11305.0	Mm.2210	NM_007379	ENSMUSG00000026944	Abca2	AI413825|Abc2|D2H0S1474E|mKIAA1062	ATP-binding cassette, sub-family A (ABC1), member 2	protein-coding	3.62752776894361	3.24597844097951	3.84219283034325	3.01490954678245	3.39434831503709	3.30138805433354	3.10952498416945	3.18512306039539	-0.746533561040018	0.22072519924061	0.528740625858094
Merged-chr4-116719600-4	chr4	116719512	116719712	+	796.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1343.0	NM_146151	230661.0	Mm.482431	NM_146151	ENSMUSG00000033985	Tesk2	-	testis-specific kinase 2	protein-coding	4.49994913987802	4.43651898448142	3.93243785041663	4.15700236895164	4.63065856186694	4.27672988145098	4.44098751213371	4.29051252761877	0.368155485103791	0.367919996757099	0.672413095509279
Merged-chr5-110386247-6	chr5	110386060	110386260	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142642, intron 5 of 18)	intron (NM_001142642, intron 5 of 18)	967.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	4.22184507315949	4.39840295966503	4.40736365905253	3.57701646646749	4.790501256094	4.77829312303565	4.72238245494674	4.11700529255077	1.02275874453142	0.0275042170771747	0.158212596358188
Merged-chr16-4371236-4	chr16	4371153	4371353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	49245.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	5.42453137298808	5.08773508072608	5.87157563860926	6.21675104687228	5.14791559254474	5.37895987246927	5.61459294958774	5.45100467768154	-0.565297337468673	0.11178789246663	0.369494973839994
Merged-chr10-78148142-4	chr10	78148023	78148223	+	978.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	21645.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	5.43985491966895	5.82943441826955	5.23712329488401	4.49130478980414	5.34709977751731	5.55991265382978	5.11341231608356	4.95301194659679	-0.127758058436848	0.751507508678297	0.902186722440378
Merged-chr5-28315711-3	chr5	28315561	28315761	+	865.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR87|LTR|ERVL?	-1528.0	NM_028234	381626.0	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	4.12179572846116	3.69858895178668	4.20240737468615	4.38694503481759	3.81492808471675	3.39803687954573	3.48523285341048	3.7922839518985	-1.41431832888571	0.00708381759178399	0.0614301964383032
Merged-chr13-101548075-4	chr13	101547977	101548177	+	879.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33B|LTR|ERVL	144553.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	3.86496337475742	3.91631626780199	4.17029110421523	4.27694192025528	4.15080084969836	4.42695688237557	3.90594016545537	4.37568141135882	0.368464318872998	0.402069182108995	0.699625539366747
Merged-chr14-54442728-4	chr14	54442604	54442804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008608)	TTS (NM_008608)	11106.0	NM_008608	17387.0	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	7.05546648883523	7.65432974579305	7.29117362531006	6.21718617512544	7.40014064559377	7.48836158563729	7.11518401308035	6.65072696080708	0.059002318456901	0.897467175228139	0.961730314099217
Merged-chr11-97645020-4	chr11	97644914	97645114	+	714.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-15298.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	3.10550408421641	3.6703217092599	3.68281239580536	3.20942092073723	3.90750530109442	3.50985661393771	3.98461984328672	3.91769693011325	1.25261207308258	0.0216451391239367	0.134922441343611
Merged-chr9-26806521-4	chr9	26806412	26806612	+	977.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310768)	promoter-TSS (NM_001310768)	-44.0	NM_153803	244757.0	Mm.293696	NM_153803	ENSMUSG00000036395	Glb1l2	-	galactosidase, beta 1-like 2	protein-coding	5.56862090924104	5.59461730280955	5.69501415879878	5.68066561408469	5.47556891615971	5.11820320768086	5.59286297946653	5.53903715661581	-0.326224765434881	0.238297906366971	0.548762903324056
Merged-chr8-105701611-4	chr8	105701504	105701704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348349)	promoter-TSS (NM_001348349)	-43.0	NM_001047435	56513.0	Mm.472753	NM_019695	ENSMUSG00000005699	Pard6a	0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40	par-6 family cell polarity regulator alpha	protein-coding	6.81275332881894	7.04738525571788	6.38244139004059	6.46666086326436	6.66166297140168	7.02952567413661	6.55891333935247	6.48724008192801	-0.00346047153084788	0.989023493369889	0.995597494443074
Merged-chr1-152746675-2	chr1	152746575	152746775	+	982.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-3876.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	3.31974600151458	3.59830103044965	3.05973839422735	2.92111199703176	3.63379006296655	3.49422719352519	3.24784571542437	3.53558341969163	0.831771466857064	0.153653856193231	0.438442775840401
Merged-chr10-98799028-6	chr10	98798902	98799102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115640.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	5.48191771550277	5.74672048420101	5.84339930748951	4.89074735533388	5.2881547486137	5.81307285875426	5.3089351415975	5.30024763046158	-0.150098091691391	0.670032367130187	0.863816502363743
Merged-chr17-32284767-4	chr17	32284692	32284892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198094)	promoter-TSS (NM_198094)	-659.0	NM_020508	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	5.81093351568258	5.58079130368326	5.66290302146866	5.30319780618542	5.79864409093243	6.03200415796578	6.01527738104356	5.80781288080308	0.548512266131613	0.0423441983996857	0.208813712336678
Merged-chr8-120768764-4	chr8	120768679	120768879	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30140.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	4.76252195122384	5.08501916185383	5.14196866973544	4.92021693569782	5.13680728812762	4.81544099225713	4.85507875421413	4.76020054371833	-0.137517688508254	0.679840261878328	0.86857902618052
Merged-chr10-67123937-4	chr10	67123826	67124026	+	898.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3332.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	4.87682989092718	4.31002816834089	4.66201272916738	5.09276825278489	4.84505889486906	4.48398027566405	4.56022615476654	4.57822172203244	-0.315877297813394	0.422853233811867	0.714933300428204
Merged-chr6-39384256-3	chr6	39384146	39384346	+	887.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011226, intron 2 of 3)	intron (NM_011226, intron 2 of 3)	2893.0	NM_011226	19331.0	Mm.123866	NM_011226	ENSMUSG00000029923	Rab19	-	RAB19, member RAS oncogene family	protein-coding	4.1489272490122	3.7440616155183	3.43071165208683	3.64698100003193	3.38970876476887	3.67100744085995	3.75178806647214	3.60812402162348	-0.481639687595018	0.351538062505583	0.658893189148013
Merged-chr9-124122257-4	chr9	124122125	124122325	+	993.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009917, intron 1 of 1)	intron (NM_009917, intron 1 of 1)	682.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	4.8351724475514	4.97602939655075	4.51933836022648	4.94951847963126	5.3000674552883	5.29733075309185	5.48077138766265	5.27158429325651	0.927893920101193	0.00351966023314489	0.0362293413933507
Merged-chr1-186708922-4	chr1	186708825	186709025	+	889.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2936.0	NM_001329107	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	5.14141202009976	4.52932483720111	4.58677970620185	5.20799391043385	4.22590059299603	4.22519252083718	4.2955251695751	4.70117056824075	-1.17750218309124	0.00445078045426356	0.0435766302550242
Merged-chr1-172004608-3	chr1	172004479	172004679	+	953.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_033509, exon 8 of 8)	3' UTR (NM_033509, exon 8 of 8)	22716.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	4.47331446111618	4.26917648622928	4.28768922002047	4.06276823707489	3.64673849199861	4.24247148033952	3.7322291284308	3.68226544687513	-1.1762950839007	0.0126710365253708	0.09339460586511
Merged-chr11-89022519-4	chr11	89022410	89022610	+	836.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	23107.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	4.18139461278255	3.88409351278516	4.26928070613396	4.66553877813451	4.04038146564567	4.0567413300835	4.20744405505675	3.93172979734626	-0.599581108165844	0.186425436248449	0.48439717188904
Merged-chr4-3678110-4	chr4	3678008	3678208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010747)	promoter-TSS (NM_010747)	-13.0	NM_001111096	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	6.91054595959059	7.19600693362824	7.08286413383188	7.1939797112232	7.23356098288129	7.28458541668348	7.69314043344437	7.37248947061907	0.402671899086842	0.0442196153869732	0.214470702016173
Merged-chr2-103578995-4	chr2	103578898	103579098	+	928.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	L2b|LINE|L2	12688.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	4.74602872171499	4.38800922659567	4.62583731972931	4.76061850796308	4.47481573864272	4.52900619417003	5.38925421738613	5.16506828911212	0.62292506850056	0.126005085621038	0.394359406824951
Merged-chr12-70347436-4	chr12	70347329	70347529	+	811.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001286387, exon 1 of 14)	5' UTR (NM_001286387, exon 1 of 14)	185.0	NM_001286386	94090.0	Mm.184012	NM_053167	ENSMUSG00000021071	Trim9	-	tripartite motif-containing 9	protein-coding	3.68803822422867	4.13331282448193	4.1134362913272	3.9798599805992	4.07616836059981	3.80836310639237	4.30132862262286	4.28003107085511	0.367142843870005	0.40807557509856	0.704163749470029
Merged-chr4-63417503-4	chr4	63417392	63417592	+	895.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008791, intron 10 of 12)	intron (NM_001008791, intron 10 of 12)	-14047.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	4.79653539539743	4.23863960329474	4.42295998196868	4.21298768134665	4.56741269021422	4.50868232111243	4.402983765481	4.65753644108026	0.260853262260211	0.502594931523257	0.769776320401967
Merged-chr8-78624220-4	chr8	78624123	78624323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009981, intron 5 of 10)	intron (NM_001009981, intron 5 of 10)	114895.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	7.47071043740597	6.95531240773406	7.19280162603129	7.3470181431283	7.57319516744443	7.56272076800381	7.45335855602664	7.53881178995491	0.369079903914881	0.0532210237115723	0.240613330722881
Merged-chr12-3871079-4	chr12	3870959	3871159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-8815.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	6.17035782446727	6.28821199468264	6.58684778015004	6.60806346594578	6.6058324091482	6.17425950768012	5.64862501741531	6.24645047079459	-0.310248983479981	0.274545350722324	0.586349721527374
Merged-chr12-102295490-1	chr12	102295390	102295590	+	768.0	f1_balb.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	11849.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	2.71951075200175	2.56885357861132	2.60473261613774	2.46748901732179	2.56897903356506	2.43570126110739	2.33105330320587	2.47597979927691	-0.711956605621552	0.317826898685615	0.629699961630668
Merged-chr15-102395224-4	chr15	102395139	102395339	+	812.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11077.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	3.7121197257076	3.4766575680812	3.71263810029855	3.68165510471361	3.68604053212569	3.93568139423712	3.69764351557232	4.03683916721764	0.571542680897675	0.219765485630729	0.527382337133262
Merged-chr13-113437765-4	chr13	113437641	113437841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65103.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	7.1624220375712	7.35253855777376	7.48478927193876	7.52935155284031	7.45825834345978	6.99098454135489	7.7169811872525	7.22752438752619	-0.0185494946782744	0.931926466996084	0.975397745055384
Merged-chr4-127043662-4	chr4	127043567	127043767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17487.0	NM_026670	68310.0	Mm.273806	NM_026670	ENSMUSG00000043872	Zmym1	5830412B09Rik|AW209050	zinc finger, MYM domain containing 1	protein-coding	5.64253865921953	5.60015646091376	5.47813331292268	5.37904213718214	5.91109336674639	5.98548470589445	5.58904905879766	5.55960353178886	0.437144335092215	0.109326893367449	0.365153157665133
Merged-chr9-65983021-3	chr9	65982906	65983106	+	871.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173185, intron 5 of 13)	intron (NM_173185, intron 5 of 13)	73996.0	NM_173185	214897.0	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	2.87961594289591	2.79997682926633	2.87990719667348	2.32286192200977	4.42854803339048	4.0541515071034	3.71733261130156	3.96004326029768	7.96408679842235	4.3216168025839e-16	8.35892289106303e-14
Merged-chr15-30520249-4	chr15	30520148	30520348	+	989.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	347655.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	4.90165403502649	5.37769587275728	5.48712848003533	5.81840402333819	5.51525153416193	5.74065082850082	5.51326992600403	5.39759103188214	0.148562327495982	0.650048220135474	0.853039400580308
Merged-chr18-61098345-4	chr18	61098261	61098461	+	767.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3B|LINE|L1	-7211.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	3.7869336056611	3.59670528521507	3.73792915262195	3.8215539185801	3.74221198840651	3.50656977882917	3.56335666492012	3.87871606673017	-0.175467467872618	0.711776455132325	0.884643553341431
Merged-chr6-38712028-2	chr6	38711928	38712128	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 12 of 14)	intron (NM_010433, intron 12 of 14)	48959.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	4.73388821531981	5.58542238390978	4.46265965447711	4.65007228598583	5.1336209143464	5.43559464575902	4.58438594767538	4.50915275791671	0.0660925474763802	0.885118534586178	0.956920983840167
Merged-chr7-132805041-3	chr7	132804946	132805146	+	748.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	8150.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	3.00939398511867	3.01318809268816	3.2833030294793	3.18585166473595	2.87917894789447	3.11896420243087	2.87289417551492	2.81158390081332	-0.883889795884255	0.145638671262255	0.425323718121529
Merged-chr10-121369044-4	chr10	121368927	121369127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	intron (NM_029364, intron 1 of 13)	3937.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	5.83276823019822	5.79763043345961	6.17869157683945	6.11131926229737	5.71531141873984	5.66541147830384	5.65651418755321	5.48291618997848	-0.587677918852096	0.0248731874874762	0.147944230982791
Merged-chr15-81393172-4	chr15	81393076	81393276	+	892.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133726, intron 1 of 11)	intron (NM_133726, intron 1 of 11)	6518.0	NM_133726	70356.0	Mm.180337	NM_133726	ENSMUSG00000022403	St13	1110007I03Rik|3110002K08Rik|AW555194|HIP|HOP|HSPABP|HSPABP1|PRO0786|SNC6|p48	suppression of tumorigenicity 13	protein-coding	4.19949353346157	4.15200246404009	4.28971455720184	4.28192802726917	4.26369067573467	4.17667293235529	4.31264827527341	4.37046690654497	0.116704130885121	0.76133740528535	0.906512173824769
Merged-chr6-122724854-4	chr6	122724764	122724964	+	932.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	17299.0	NM_001289828	71950.0	Mm.6047	NM_028016	ENSMUSG00000012396	Nanog	2410002E02Rik|ENK|ecat4	Nanog homeobox	protein-coding	4.71600200822884	4.74006707053971	4.5056143427354	4.92559628611421	4.89347789010023	4.68300588356235	4.90730464249179	4.82534954088827	0.176934195019751	0.606241869690144	0.829351704182035
Merged-chr10-51520197-4	chr10	51520089	51520289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	29291.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	6.49024663268275	6.63538032127923	6.14550086127227	6.71993881699715	6.66236927575641	6.36716945803399	6.65872439271275	6.48675633892653	0.0350718095119329	0.881066572774947	0.955322489265647
Merged-chr8-69750059-4	chr8	69749939	69750139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001200023)	promoter-TSS (NM_001200023)	-77.0	NM_001200023	620419.0	Mm.460423	NM_001200023	ENSMUSG00000092260	Zfp963	-	zinc finger protein 963	protein-coding	7.90007896216001	7.78609052284001	8.09653863837811	8.16137473425015	7.83874511028211	7.76644319424708	8.2794684742591	7.88142797361979	-0.054263928119704	0.778012251947323	0.913487233105429
Merged-chr6-100335598-3	chr6	100335476	100335676	+	584.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48218.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	3.25677114858551	3.28842446623897	3.19856259202568	3.30817707171647	3.33982419117792	3.18107033850544	3.24522019419703	3.31146964973246	0.0257010309714956	0.961117436774244	0.98607960708679
Merged-chr8-13595003-4	chr8	13594913	13595113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 7 of 23)	intron (NM_009025, intron 7 of 23)	-32552.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	7.7688619571715	7.65441780651773	8.2067036761745	8.14727017273226	7.8830924899959	7.74794147255167	7.9320594356831	8.06997701440254	-0.0735655254172191	0.707129674050094	0.882396225404233
Merged-chr1-34439405-12	chr1	34439287	34439487	+	999.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178601)	promoter-TSS (NM_178601)	285.0	NM_027159	69668.0	Mm.379170	NM_027159	ENSMUSG00000042111	Ccdc115	2310061I09Rik|Ccp1	coiled-coil domain containing 115	protein-coding	7.69591432666224	7.88293193862031	6.98608934338176	7.40535757842522	7.74008226619329	8.08301800062597	7.90116682641312	7.30610896611535	0.330184244738821	0.18524116337143	0.483083489690593
Merged-chr4-101685348-4	chr4	101685259	101685459	+	976.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32048.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	5.23683838575146	5.16762898483901	4.98230393666845	4.59301194924532	5.72592241861225	5.90068772518562	5.86563344913444	5.63001985002012	1.4009762427497	4.98438444707993e-06	0.000147519127051436
Merged-chr17-56277595-3	chr17	56277532	56277732	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174989)	promoter-TSS (NM_174989)	-865.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	3.9825752590742	3.77600632220928	3.40269674934155	3.84263060356412	3.64547108332279	3.96993388841405	3.57479039479378	3.58635273593142	-0.208680277417213	0.675513631325379	0.866777974061798
Merged-chr11-69838445-4	chr11	69838344	69838544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026982)	promoter-TSS (NM_026982)	-81.0	NM_026982	69186.0	Mm.248772	NM_026982	ENSMUSG00000070394	Tmem256	1810027O10Rik|3110009M16Rik	transmembrane protein 256	protein-coding	8.42469060170563	8.60146912162083	8.40527085598696	8.26676218330415	8.44514851856225	8.54032143481774	8.37141082304107	8.37869885072057	0.0116635375724819	0.941159267173701	0.97878198615135
Merged-chr11-70970694-7	chr11	70970601	70970801	+	993.723816	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_075087)	promoter-TSS (NR_075087)	501.0	NM_001252415	69723.0	Mm.275691	NM_027186	ENSMUSG00000018449	Rpain	2400006N03Rik|Rip	RPA interacting protein	protein-coding	4.29364862956651	4.29033513101256	4.20747267344543	4.07118577032297	4.33375257851546	3.96888841918722	4.18897322940189	4.20488589370919	-0.050209155528946	0.901383855884421	0.963342914941175
Merged-chr9-78482546-4	chr9	78482456	78482656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010106)	promoter-TSS (NM_010106)	-832.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	5.17129389629527	5.22534543934837	5.07230609654221	5.25110864266742	4.73448185621213	5.28135367010438	5.17808434227685	5.50355444447398	0.0101748976689726	0.975408274528572	0.991307820304815
Merged-chr17-29363305-4	chr17	29363202	29363402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013710, intron 1 of 15)	intron (NM_013710, intron 1 of 15)	2388.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	5.59188797745685	5.98745222255021	5.4124610534626	5.46849242944885	6.14766885885704	5.87629962166816	5.83923881981406	5.90934563749721	0.529848764433505	0.0546693562421259	0.244137656563039
Merged-chr8-117054913-2	chr8	117054813	117055013	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029686, exon 14 of 43)	exon (NM_029686, exon 14 of 43)	27536.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	4.20617093342268	4.04190525051679	4.34375049292814	4.59182478592305	4.47581514988313	4.17832601714555	4.48494664297729	4.42469074758752	0.165221688056192	0.686454708753226	0.871787672169905
Merged-chr2-5824868-4	chr2	5824763	5824963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356504, intron 3 of 6)	intron (NM_001356504, intron 3 of 6)	-20171.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	5.86251280587379	6.09244843845876	5.83875880667903	6.25807113400164	6.02145658039832	6.11133331124702	5.97225776319889	6.34237623389845	0.112243312118116	0.659335715338779	0.858234860598338
Merged-chr6-89312680-3	chr6	89312564	89312764	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26939.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	3.46046508366377	3.13903047682563	3.36264294128106	3.52912761276962	3.03513492095338	2.97798762130086	3.00248608074802	3.01041920144426	-1.53266583377871	0.00991356702745394	0.0784303420525891
Merged-chr11-85505959-3	chr11	85505853	85506053	+	856.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 15 of 25)	intron (NM_138681, intron 15 of 25)	152789.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	3.12034661735866	3.37858452401261	3.28991092177474	3.22979701978296	3.29505220012494	2.96037924714051	3.04899305405654	2.99294743029237	-0.651339339000982	0.264817792218086	0.576642744873648
Merged-chr12-119371511-4	chr12	119371419	119371619	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71891.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	4.86451680260729	5.40835040982506	4.79095008196842	4.53316691734216	5.06690857493985	5.07438677807399	4.60676566621131	4.38869560729051	-0.231708367970618	0.573906175135427	0.811973307930812
Merged-chr12-12279509-4	chr12	12279387	12279587	+	883.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	17348.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	4.68482419499568	4.37633959895698	4.75551218229355	4.9320113693608	4.51196122241135	4.11277910992807	4.34032637160039	4.44624173072412	-0.772446112783857	0.0497408871476974	0.230900920550772
Merged-chr18-49850537-4	chr18	49850425	49850625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081371, intron 5 of 42)	intron (NM_001081371, intron 5 of 42)	17528.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	5.76277579188589	5.9991043251249	6.0901762204836	6.32808567641031	6.00343897981881	5.96788650979456	6.23059447077019	6.16538187267231	0.0213896414734204	0.933389060271118	0.975967471696899
Merged-chr9-72491944-4	chr9	72491831	72492031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009359)	promoter-TSS (NM_009359)	28.0	NM_009359	21778.0	Mm.14485	NM_009359	ENSMUSG00000090626	Tex9	Gm19407|tsec-1	testis expressed gene 9	protein-coding	5.23245129391043	5.42526608221181	5.82430361108522	4.95935461007711	5.41244810764468	5.27409291416971	5.57212808967996	5.29356678838882	0.0201961612131041	0.951259248871901	0.98262414668253
Merged-chr4-129810421-4	chr4	129810334	129810534	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10045.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	4.79971510630352	4.99818617912612	4.83771803333097	4.83536276062353	4.83206588693083	4.63729783578934	4.95235442875277	4.97318175859369	-0.0261800542124344	0.936192618227308	0.976885307602567
Merged-chr10-5288483-4	chr10	5288380	5288580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347711, intron 55 of 145)	intron (NM_001347711, intron 55 of 145)	-93773.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	6.42771423961366	6.22306316373805	6.16726006761669	6.55459840254775	5.43833695963812	5.64306397021631	5.90315774326314	6.12344958197548	-0.887899364466079	0.00111456751836967	0.0146615785233848
Merged-chr6-84661880-3	chr6	84661715	84661915	+	854.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 20 of 21)	intron (NM_177077, intron 20 of 21)	-67907.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	3.27205386967845	3.25737948327048	3.84073844264631	3.11476290499568	3.09683382721727	2.96885555485076	3.47612233571717	3.27073697498422	-0.651754377145075	0.288590192368859	0.60062527040857
Merged-chr8-106343063-3	chr8	106342954	106343154	+	886.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5066.0	NM_021491	58994.0	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	3.51931989733206	3.61473685721257	3.40512218129836	3.5699946850549	3.66314986218121	3.5778946999786	3.61017256968402	3.40345269081444	0.121215182038512	0.803751801761655	0.924336354580751
Merged-chr1-135536558-4	chr1	135536460	135536660	+	988.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 2 of 28)	intron (NM_173437, intron 2 of 28)	48795.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	4.90089047013357	5.57913289464897	5.22707151144121	4.68575016036894	4.90604741229042	5.14856342329641	4.84086613824489	4.56277856617777	-0.501255292191413	0.192696755534809	0.492494160223058
Merged-chr9-56995031-4	chr9	56994943	56995143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019651)	promoter-TSS (NM_019651)	75.0	NM_019651	56294.0	Mm.325643	NM_019651	ENSMUSG00000032290	Ptpn9	MEG2	protein tyrosine phosphatase, non-receptor type 9	protein-coding	5.81482817466768	5.79859986421863	5.81585043273435	5.54983572603396	5.6877437169408	5.78985035577257	5.68987817684804	5.94442289596632	0.0713747512474913	0.782994376370105	0.915463993932762
Merged-chr4-88309937-4	chr4	88309840	88310040	+	950.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 21 of 43)	intron (NM_001081184, intron 21 of 43)	128986.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	4.33504809818045	3.99876525871227	4.5200042842898	4.39099431934983	4.25152277592285	3.9120029842943	4.00013556345016	4.16019620540526	-0.584610572822516	0.170967098228058	0.464071117837823
Merged-chr12-79296351-4	chr12	79296273	79296473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252562)	promoter-TSS (NM_001252562)	-91.0	NM_001008550	211978.0	Mm.297919	NM_001008550	ENSMUSG00000066440	Zfyve26	4930465A13|9330197E15Rik|A630028O16Rik|Gm893|mKIAA0321	zinc finger, FYVE domain containing 26	protein-coding	7.2533329347271	7.32140097846956	6.88294260214928	7.15722084475119	7.32591567468023	7.47347765840697	7.18585496329931	7.35233564143413	0.230683393381405	0.232151418219793	0.541762755236439
Merged-chr14-46734960-4	chr14	46734871	46735071	+	786.424988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25570.0	NM_001360041	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	3.99206380412507	4.2531403798894	4.28273630077229	4.54789093353627	4.43874776218063	4.00157377718712	4.34645557979713	4.09431244002992	-0.141969097678834	0.741202633871734	0.898139463026673
Merged-chr15-101375124-4	chr15	101375027	101375227	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5002.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	5.66620563580441	5.77876679600937	5.91490245272057	6.02977987092419	5.46608577683382	5.3340589713518	5.30022988685251	5.14941357659119	-0.922492539913433	0.000961254298202437	0.0130350770988286
Merged-chr8-119344437-4	chr8	119344360	119344560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024219)	promoter-TSS (NM_024219)	-78.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	7.97267064332861	8.04497554597849	7.52149236305224	7.83828363299132	7.98133720764849	7.86308886247855	7.93572039108208	7.91322245018987	0.0840135070884599	0.639594530779313	0.847607151813091
Merged-chr3-67582753-4	chr3	67582644	67582844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025813)	promoter-TSS (NM_025813)	-24.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	7.4597858255222	7.44190104153573	7.1242183766461	7.66536386873784	7.57477237748564	7.67567320667387	7.47988365225819	7.49343071056629	0.142949880337112	0.458293117509344	0.741196722451408
Merged-chr10-13304868-4	chr10	13304755	13304955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	19434.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	7.07427531702722	7.47117640592709	7.18084641277569	7.05494293135468	7.42390278603071	7.45465694699049	6.81393681606553	6.92856291465943	-0.017313376118988	0.940446619744691	0.978605877642248
Merged-chr15-59612011-4	chr15	59611937	59612137	+	975.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36617.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	5.22789786436007	5.09341996605408	4.80701043134376	4.56487442168333	5.51493724815946	5.34099896011218	5.07789157656191	5.19488040408705	0.695707356800639	0.0411544589813434	0.20523598653633
Merged-chr19-55866050-4	chr19	55865933	55866133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-29288.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	5.4925519403631	5.64592370925928	5.54964732770004	5.88571863639989	5.57019643249438	5.41971741698842	5.54880945382981	5.77123744118481	-0.147457400124595	0.595165695305836	0.823783168849173
Merged-chr17-70832760-4	chr17	70832680	70832880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13997.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	8.71489409715008	8.76064144172158	8.96646004142571	8.760873679361	8.60801782999146	8.51296011534313	8.89465510690738	8.54215773862464	-0.1925975450464	0.234909373872471	0.544769632257148
Merged-chr5-64600098-4	chr5	64599978	64600178	+	916.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045078, intron 3 of 3)	intron (NR_045078, intron 3 of 3)	10621.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	3.5551086450418	4.09764580814282	3.9480938362385	4.17963827726312	4.01073656317855	3.79807728694232	3.9314628070468	3.99322971393086	-0.111751693874093	0.811139838212341	0.926883359837906
Merged-chr10-25443788-3	chr10	25443691	25443891	+	973.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013511, exon 3 of 20)	exon (NM_013511, exon 3 of 20)	35423.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	4.81516577522451	4.46090067275699	5.05130745462152	5.16778910709457	5.2640778508274	4.70656168550683	4.50727755162929	4.56981429311047	-0.189842382296644	0.641211192564269	0.848625403955452
Merged-chr4-74362952-4	chr4	74362852	74363052	+	909.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 16 of 20)	L1MDa|LINE|L1	111073.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	4.36298471115398	3.98004803222453	4.09289328287495	4.52223818234315	4.37918656794591	4.16583378283353	3.97268558457926	4.43952742869533	-0.035683829687456	0.934416473310479	0.976356212091203
Merged-chr6-122633496-4	chr6	122633375	122633575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	7051.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	6.02331370147567	6.32420495357939	6.2276277311707	5.888270236257	5.7343418653707	6.1337733945959	5.97141685827574	6.66129726773896	0.0700642555258535	0.810242336611638	0.92679579587174
Merged-chr7-30287246-3	chr7	30287143	30287343	+	815.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_144498, intron 2 of 2)	intron (NR_144498, intron 2 of 2)	-4452.0	NM_001360763	76686.0	Mm.159258	NM_001081114	ENSMUSG00000013921	Clip3	1500005P14Rik|AI844915|Clipr-59	CAP-GLY domain containing linker protein 3	protein-coding	3.5781013148956	3.6729350607133	4.00109828824868	3.53337853887639	3.52628627604433	3.38045885805288	3.50847647286188	3.82817661269632	-0.410433964277615	0.42154253935097	0.714001052191097
Merged-chr18-9731168-3	chr18	9731070	9731270	+	856.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	23522.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	3.0428215485635	2.97201678476611	3.04326398122474	2.9436885764335	2.59174287878863	2.70376985081509	2.73369854753337	2.74089524388969	-1.5296675445262	0.0198363323021911	0.127375742103589
Merged-chr17-32951635-3	chr17	32951523	32951723	+	859.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033585, exon 3 of 3)	non-coding (NR_033585, exon 3 of 3)	-4262.0	NM_130882	170716.0	Mm.254838	NM_130882	ENSMUSG00000024055	Cyp4f13	0610030I10Rik|Cypf13	cytochrome P450, family 4, subfamily f, polypeptide 13	protein-coding	3.7186860698601	3.56892710870943	3.39703744453379	3.32578949053546	3.43643757619822	3.68553322397195	3.65509795980617	3.51165781598168	0.229474668359957	0.647371840283946	0.851663990750781
Merged-chr1-162622113-3	chr1	162622004	162622204	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17046.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	6.55383904988444	6.48846659258845	6.742382434245	6.486572011685	3.98471932657631	4.1592617351596	4.06618808814467	4.22387015725107	-5.70459151482311	5.5476356622277e-26	3.8337394058418e-23
Merged-chr13-100837330-3	chr13	100837237	100837437	+	965.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3910.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	3.68473783419243	4.12885537691859	3.96557244568853	4.23522661325723	3.97472986310565	4.0882235308084	3.89825136185076	4.35144413529638	0.139559102138216	0.759611488702278	0.905741537670396
Merged-chr2-102867944-4	chr2	102867856	102868056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	33709.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	6.39260828145969	5.81617870921327	6.42760532342485	6.66651122360444	5.96574800102315	6.02358619809392	6.50585401082109	6.47209621436458	-0.163486274218729	0.567738315110062	0.808331754798167
Merged-chr4-44163319-4	chr4	44163209	44163409	+	813.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038993, intron 1 of 11)	MTD|LTR|ERVL-MaLR	4229.0	NM_175201	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	4.09934636184716	4.22153165567616	4.32897421413878	4.3618160853351	4.324600242872	4.06312983313291	4.08292802872554	4.51979523720977	0.00332910813930986	0.993462950199896	0.997702270136287
Merged-chr7-83655410-4	chr7	83655273	83655473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360087, exon 13 of 19)	exon (NM_001360087, exon 13 of 19)	122.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	6.42380879941085	6.64828378245688	5.98424950406158	6.13834116590712	6.50042830582194	6.616899982023	6.30492503418437	5.97998993661986	0.0797491767482696	0.76588023227048	0.908405583340288
Merged-chr14-122108482-2	chr14	122108382	122108582	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080556, intron 1 of 16)	intron (NM_080556, intron 1 of 16)	1400.0	NM_080556	68059.0	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	3.1285325666558	3.37211144627695	2.99325640322311	3.03647326523395	3.30884021743944	3.24092238445586	3.63506736683934	3.36279292871978	0.938330964025043	0.0904631584284713	0.328557870893977
Merged-chr3-135440296-4	chr3	135440200	135440400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356598, intron 2 of 8)	intron (NM_001356598, intron 2 of 8)	1174.0	NM_001356597	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	5.51936230816593	5.55604969084737	5.80782329499504	5.62719381290079	5.76182243402482	5.80836772287172	5.77825690816804	6.07551554353162	0.375664391729887	0.146219185452374	0.426249555691303
Merged-chr12-87443826-4	chr12	87443712	87443912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026958)	promoter-TSS (NM_026958)	27.0	NM_001102565	211064.0	Mm.486235	NM_001102565	ENSMUSG00000079036	Alkbh1	2700073G19Rik|Abh|Alkbh|alkB|hABH	alkB homolog 1, histone H2A dioxygenase	protein-coding	6.86404487340138	6.63883215635167	6.8911278355786	6.58957844199174	6.91303832094438	6.39106015998492	6.66347442019606	6.79327209905724	-0.0391362478190537	0.860482411730741	0.947235966356053
Merged-chr6-50974020-4	chr6	50973932	50974132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	197917.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	5.25931755904048	5.51153383705211	5.63247760875435	5.67627629705018	5.92971789144407	5.66843381695039	6.22462757327081	6.03876495667085	0.717407327359648	0.00939053434203639	0.0755008295416026
Merged-chr11-99202543-3	chr11	99202425	99202625	+	657.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28492.0	NM_020618	57376.0	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	4.06827907035077	3.93219100916903	3.83206309521662	3.24115524071101	3.80111098339331	3.66321316993012	3.96136621505918	4.22811264926098	0.362071654305367	0.492731502611412	0.763716125348468
Merged-chr12-51829486-4	chr12	51829387	51829587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144788)	promoter-TSS (NM_144788)	49.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	6.45328572109676	7.06309822263676	7.4050241389009	6.72431068255458	6.65700858258153	6.80423146463891	6.56035604534378	6.65377190976149	-0.4031502625954	0.113386741741159	0.37231881212317
Merged-chr4-41760424-4	chr4	41760325	41760525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172054)	promoter-TSS (NM_001172054)	-18.0	NM_001163401	16157.0	Mm.193451	NM_010549	ENSMUSG00000073889	Il11ra1	AI314697|GP130|Il-11ra|Il11ra|Il11ra2|NR1	interleukin 11 receptor, alpha chain 1	protein-coding	7.17532030837987	7.1043254985779	7.1293183023908	7.58297940178226	7.44872314958088	7.28251928192171	7.48214255413379	7.40358226203048	0.17132343253079	0.397618791252942	0.6959928129013
Merged-chr6-149342914-1	chr6	149342814	149343014	+	566.0	f0_c57.idr	Intergenic	RLTR45|LTR|ERVK	33500.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	3.22556656694727	3.38144789939304	3.29039292545253	2.87361916028986	3.48942784254145	3.64087235746921	3.33896188254362	3.92271434310088	1.44278888066682	0.0103585978498889	0.0809790924060673
Merged-chr14-19750638-3	chr14	19750535	19750735	+	968.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008695)	promoter-TSS (NM_008695)	-622.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	4.14896358045825	3.85770818680413	3.9850979350552	3.87212687211841	3.56383302106488	3.62868647320537	3.49951060825574	3.74135134245352	-1.08054268645699	0.0225868211708452	0.138804347597384
Merged-chr11-29787046-4	chr11	29786949	29787149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 24 of 41)	intron (NM_146016, intron 24 of 41)	38619.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	6.35005516496567	6.06618224913174	5.80943260926748	6.38823859498099	6.48062948891311	6.45416126706654	6.4979831404687	6.05006154564195	0.29909849049484	0.24438318532724	0.555571726234672
Merged-chr14-66845682-4	chr14	66845577	66845777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	22923.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	6.3660858956291	6.25735777571169	5.52651499914777	5.18867353442456	6.53288557308812	6.59287932051463	6.55225852531893	6.23694407125122	0.860695465073844	0.00879323289753501	0.0719252498751602
Merged-chr13-9181231-4	chr13	9181129	9181329	+	981.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87348.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	4.59357648519011	5.2227179367865	5.29586341020793	5.07237561507154	5.44205699065804	5.25357582790659	5.05457225359118	5.04169461487827	0.265439113722803	0.43150780584625	0.721710551668303
Merged-chr19-16407912-4	chr19	16407813	16408013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27754.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	6.70728711997607	6.90985095170628	6.47976493281873	6.77410807497437	7.00391925784788	6.82399821880142	6.86689279159509	6.45711988010248	0.110446538537311	0.621915996483998	0.838127093809464
Merged-chr7-132589746-3	chr7	132589643	132589843	+	654.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9894.0	NM_009123	20231.0	Mm.334281	NM_009123	ENSMUSG00000048528	Nkx1-2	Nkx-1.1|Nkx-1.2|Sax1	NK1 homeobox 2	protein-coding	3.42261434173534	3.15248859723264	3.31830816969702	3.34419748626674	3.42386691679909	3.25146420460368	3.19250953514593	3.07725779131672	-0.233594361755862	0.670631965239721	0.8642024686037
Merged-chr19-42131338-4	chr19	42131258	42131458	+	918.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2365.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	4.61940945683891	5.24847068881089	4.94341933723326	4.60514477925367	4.30991970431316	4.79536158835238	4.47111932901944	4.39524663077173	-0.81506540936246	0.0384485451244868	0.196727908616456
Merged-chr10-111365256-4	chr10	111365144	111365344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66565.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	5.52937621065707	5.24061474492394	6.03691701150889	6.47008280701279	4.75279960838971	4.54829384336842	5.50183390015283	5.442490238602	-1.32915012055504	0.0415937167214581	0.206528240905596
Merged-chr17-32924865-4	chr17	32924750	32924950	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_130882, exon 13 of 13)	exon (NM_130882, exon 13 of 13)	-7494.0	NM_001357788	64385.0	Mm.486449	NM_022434	ENSMUSG00000024292	Cyp4f14	1300014O15Rik|cyp4f-14	cytochrome P450, family 4, subfamily f, polypeptide 14	protein-coding	5.82063291525601	5.64920585238729	5.67451015700027	4.93748823537196	5.59598132213711	6.01934762675413	6.20018007439305	5.8404097261611	0.629638471286561	0.0522946246311358	0.238149653654486
Merged-chr4-56222225-4	chr4	56222092	56222292	+	981.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	519233.0	NM_025271	11471.0	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Gm26657|Tact1	actin-like 7b	protein-coding	5.60402919597873	5.34053939257368	4.81197023674816	5.2344898028992	5.67592746798633	5.29885565857043	5.19629264737696	5.08391417917824	0.12499768695345	0.712467852828868	0.884883193843292
Merged-chr2-29802642-4	chr2	29802553	29802753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011989)	promoter-TSS (NM_011989)	-27.0	NM_011989	26569.0	Mm.330113	NM_011989	ENSMUSG00000059316	Slc27a4	BB144259|FATP4	solute carrier family 27 (fatty acid transporter), member 4	protein-coding	6.78263887158059	6.95431682999367	6.75561077962956	6.83709343788103	6.51084816963211	6.59132080805075	6.89348331153136	6.40873158727309	-0.321757039530212	0.132463385152654	0.405338625615772
Merged-chr16-11411923-4	chr16	11411813	11412013	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290148, intron 1 of 13)	RLTR20C2_MM|LTR|ERVK	6265.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	4.3593319623293	4.51153596058382	4.16031769115273	4.84863163487341	4.73163735350836	4.66444368532525	4.62717541828868	4.26139269018887	0.154861665642301	0.70684537795344	0.882258354066458
Merged-chr19-46075928-4	chr19	46075842	46076042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053086)	promoter-TSS (NM_053086)	95.0	NM_001039351	70769.0	Mm.402190	NM_053086	ENSMUSG00000015176	Nolc1	NOPP130|NOPP140|P130	nucleolar and coiled-body phosphoprotein 1	protein-coding	8.26970302557936	8.25607218908943	7.6082412855475	7.77495975767646	8.32084331873747	8.44883655754429	8.0157057400876	7.99501194136952	0.260572742342733	0.228556206282562	0.53740757819062
Merged-chr5-32138574-4	chr5	32138475	32138675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	2103.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	6.06627130784324	6.19254241651724	6.35556791579048	6.25515935115849	6.19955183329806	5.58970104701328	6.35666272184909	6.40144074856028	-0.0669638275016429	0.800665323686086	0.923103471519366
Merged-chr6-39068865-4	chr6	39068802	39069002	+	696.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 9 of 12)	intron (NM_011539, intron 9 of 12)	-1316.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	4.11472674120013	3.90527236260937	3.97684366874234	4.0926785207138	3.7453980615394	3.94252232654759	3.80664076865379	4.27627403978797	-0.201433922569691	0.651797349559841	0.854186462869977
Merged-chr13-37772890-4	chr13	37772815	37773015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53123.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.64502941275246	5.77168866975408	5.56612310400882	5.54777442205412	5.492517798871	5.94202614516349	5.69211638483379	5.53445645503144	0.061235685849088	0.821369970895319	0.931627649722857
Merged-chr4-105306185-3	chr4	105306084	105306284	+	815.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	148837.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.98669131050625	3.65315449370161	3.9873154182968	3.91758712161685	3.59843415748144	3.81100994884919	3.92509564047618	3.44862918047907	-0.552423098565443	0.250803655338277	0.562071514855427
Merged-chr10-19587849-4	chr10	19587744	19587944	+	902.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-4105.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	4.03172768689818	4.06397600913667	4.524551372594	4.28580099349021	4.43912311962149	4.36074142460529	4.5030211913065	4.27687423317671	0.374141262715548	0.345647609307096	0.653988358142424
Merged-chr8-57468781-3	chr8	57468665	57468865	+	801.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009136, intron 1 of 2)	B4A|SINE|B4	12842.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	3.66009512849344	3.8029269980817	3.76019084544199	4.35397500999875	3.50207245043817	3.20152147347613	3.15584123516091	3.30495311585858	-2.10558626798403	0.000443646218368389	0.00699408508909049
Merged-chr4-116827986-4	chr4	116827879	116828079	+	950.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6471.0	NM_146256	242642.0	Mm.279897	NM_146256	ENSMUSG00000043155	Hpdl	A830048M07Rik|BC034099|Gloxd1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding	4.27205809525336	4.41686487846718	4.02534687924208	4.226066627884	4.61161987086376	3.91055140079521	4.49632967361343	4.43840404644943	0.371284367037997	0.378187381461195	0.680787021699663
Merged-chr6-135261304-4	chr6	135261198	135261398	+	965.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6962.0	NM_001080553	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	4.85741261233182	4.54408426659607	4.55292459173661	4.5816237323612	4.84140525317203	4.848999700263	4.8346696658462	4.55005109848223	0.30366067566421	0.378853151895909	0.681370295695184
Merged-chr16-21794347-4	chr16	21794225	21794425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037957)	promoter-TSS (NR_037957)	-22.0	NR_037958	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	7.55154423797648	7.76873343723962	7.2928613542552	7.64103546109804	7.71570178623703	7.85038566301627	7.62750669833513	7.3098014761046	0.0807860136053986	0.686533005131759	0.871787672169905
Merged-chr18-9958054-4	chr18	9957958	9958158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153552)	promoter-TSS (NM_153552)	-122.0	NM_153552	225160.0	Mm.219648	NM_153552	ENSMUSG00000024287	Thoc1	3110002N20Rik|AW107452|NMP-84	THO complex 1	protein-coding	7.02066639116507	7.35571554052866	7.44238732362488	7.23470060058106	6.94281577141234	7.19924392620139	7.20813363996545	7.24997511819082	-0.167880098508005	0.394116051048336	0.693311907408667
Merged-chr7-135667487-3	chr7	135667378	135667578	+	987.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316681, intron 7 of 17)	intron (NM_001316681, intron 7 of 17)	-15164.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	3.40164998170914	3.11939740472975	3.55097165479364	3.98682576506487	2.81217869792417	3.08256360250324	2.96153980208792	2.96902056140028	-2.53805662406486	0.000200780153904918	0.00365226950544293
Merged-chr15-34060887-1	chr15	34060787	34060987	+	742.0	f0_balb.idr	Intergenic	Intergenic	-21832.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	3.49382792900019	3.26665772178641	3.49433310173839	3.53881406785951	3.11973559326314	3.38419672707385	3.47972586656193	3.14277968698357	-0.608949085578932	0.262128251053633	0.574100843086496
Merged-chr9-124016795-4	chr9	124016700	124016900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5171.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	5.79906350937077	5.6176143474852	5.25981576108967	5.96616880313066	5.1025976826914	4.7490756314557	5.02707583655349	5.37836822219781	-1.09286197759201	0.000961903846795441	0.0130408651754996
Merged-chr6-4600946-4	chr6	4600843	4601043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145398)	promoter-TSS (NM_145398)	-123.0	NM_145398	213819.0	Mm.270703	NM_145398	ENSMUSG00000015189	Casd1	Cas1|Cast1|SOAT	CAS1 domain containing 1	protein-coding	5.45757280531081	5.23217833985265	5.40083639023871	5.59373589194707	5.27781477503725	5.57560429481358	5.56387798922841	5.63787631736692	0.125856490736352	0.660455185053168	0.858890993110305
Merged-chr8-106527439-2	chr8	106527339	106527539	+	738.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007665, intron 2 of 15)	intron (NM_007665, intron 2 of 15)	16587.0	NM_001037809	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	3.10604578573614	3.1552235966999	3.52381843744236	3.13900462076335	2.84790322134257	3.08704076256656	3.09530833348376	3.22253328494563	-0.685799675834434	0.24847222479961	0.559595142825865
Merged-chr5-134102846-4	chr5	134102759	134102959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030719, intron 1 of 8)	intron (NM_030719, intron 1 of 8)	3111.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	5.87340567251603	6.29703057334334	5.64485692490383	5.55239710870282	6.1347011776612	5.95395790898304	5.99717062053788	5.79829091624272	0.18064379207982	0.527815146579357	0.784574591591773
Merged-chr10-118796737-4	chr10	118796658	118796858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72145.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	8.03974034743571	8.11425598329851	8.16023454267575	8.05728243205996	7.87603205567674	8.10860294620584	8.05411549011737	7.82087074109482	-0.161582656055281	0.31883116352771	0.630689030618315
Merged-chr8-11008081-7	chr8	11007964	11008164	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081212, exon 1 of 2)	exon (NM_001081212, exon 1 of 2)	214.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	5.05078870603517	5.19699930958855	5.3518329949096	5.34597833346405	4.43814436430785	5.04741758780811	4.95797397238128	5.14587007722228	-0.648290721007063	0.0604529978725531	0.25974791353196
Merged-chr17-35222452-4	chr17	35222360	35222560	+	820.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010909, intron 2 of 3)	intron (NM_010909, intron 2 of 3)	-12550.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	4.10123584430445	4.08698977872964	4.05555128431851	3.72863577786564	4.238719335685	4.18006930763327	4.17052423468931	3.6734941700499	0.260572500205421	0.566070189146525	0.807783748011785
Merged-chr11-55460733-4	chr11	55460633	55460833	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	475.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	4.02174040703087	4.19664562477148	4.12287928040541	4.0683899596427	4.38117817189875	4.29598499681385	4.24137488340013	4.34173889471776	0.540059714874731	0.16249125509844	0.451742571052293
Merged-chr1-191095761-4	chr1	191095651	191095851	+	985.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-2663.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	5.07750233767709	5.43614479420281	4.78447329945077	5.22748648028387	5.04094279279794	4.83528260829253	4.98678349142492	5.04168279792666	-0.344862241855711	0.295210778006231	0.607341695118375
Merged-chr4-106875800-1	chr4	106875700	106875900	+	548.0	f0_balb.idr	Intergenic	Intergenic	-35670.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	3.37170175923961	3.25136152739324	3.37215629082091	3.73179104388818	3.06718661476297	3.48634690629908	3.41277309733827	3.05814874715263	-0.674653546930174	0.246219538366274	0.557474832541212
Merged-chr2-34749910-4	chr2	34749822	34750022	+	877.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151469, intron 2 of 26)	intron (NR_151469, intron 2 of 26)	5310.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	4.12436443739432	3.95278882823941	3.73476381315285	4.12959326901889	3.98436071425144	3.79461834330006	4.02035651164981	3.73281254033705	-0.303081302252799	0.500987498177387	0.769060324636996
Merged-chr6-120916901-4	chr6	120916779	120916979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007544)	promoter-TSS (NM_007544)	-55.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	6.93479527660906	7.10358063608787	6.82392937165439	6.82088801936963	7.12466135545821	7.38810557655845	7.29794602847138	7.21733274702658	0.457754843329876	0.0173070377889736	0.11604160161844
Merged-chr4-53218263-4	chr4	53218160	53218360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27936.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	6.68020412606998	6.98243140940369	6.98256643179187	7.09142079651148	6.80934612694377	6.82719258350378	6.39217620721865	6.73700231619934	-0.347408381639849	0.109558039377604	0.365493760831786
Merged-chr14-32085565-5	chr14	32085378	32085578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104305)	promoter-TSS (NR_104305)	-192.0	NR_104305	105638.0	Mm.2519	NM_172254	ENSMUSG00000021905	Dph3	DELGIP1|DelgipP1|Desr1|KTI11|Zcsl2	diphthamine biosynthesis 3	protein-coding	6.81136578533755	6.70611898809162	7.17282459626537	6.48277160637921	6.8711671443606	7.33817351060488	7.00050880830215	7.2308903196465	0.435724753720043	0.063805158317138	0.268263887171881
Merged-chr7-27542604-6	chr7	27542509	27542709	+	867.535339	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 3 of 13)	intron (NM_001317355, intron 3 of 13)	10609.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	3.52510964345196	3.54793600963887	4.04977291996391	3.45098461930399	3.43318883485115	3.70200239243846	3.4528764121123	3.92435685496075	-0.0557966108424666	0.915685126591629	0.968763998229684
Merged-chr1-95667035-4	chr1	95666945	95667145	+	829.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 1 of 3)	intron (NM_001159745, intron 1 of 3)	549.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	3.87575769116066	3.91985164831427	3.64024057816603	3.19713681953986	3.59931537357841	3.59197091195478	3.40186924795664	3.2836648352581	-0.659123636156386	0.239918067237829	0.550399004463438
Merged-chr19-3708243-4	chr19	3708148	3708348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358258)	promoter-TSS (NM_001358258)	-45.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	8.47109660216562	8.51990754473639	8.50149729183637	8.07588470892969	8.23969048899364	8.49391814016307	8.36796353978211	8.05954341724916	-0.126063023401861	0.494252971869735	0.764958301472405
Merged-chr15-88491080-4	chr15	88490958	88491158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109244.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	5.73267626026955	5.57968526678613	5.41373886114676	6.14793722085468	6.20192272282167	5.59470068788404	6.01987306571773	6.19721196099422	0.415483351860754	0.17380347026014	0.467948602702518
Merged-chr17-65737306-4	chr17	65737205	65737405	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	35447.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	5.31510449567813	5.26460704898821	4.75453803096948	5.07984098897433	5.21212462813681	5.30705688539804	5.00640728717474	5.36776045059851	0.201767781147263	0.524429559409494	0.782926540735944
Merged-chr6-33060349-4	chr6	33060236	33060436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025336)	promoter-TSS (NM_025336)	-76.0	NM_025336	66075.0	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	8.49423161254707	8.48471612120951	8.572718383715	8.78625096879708	8.45474812904393	8.5200112347579	8.67015125725873	8.54362742713773	-0.0619100173063494	0.695905629041229	0.876953947481157
Merged-chr5-147899185-3	chr5	147899095	147899295	+	829.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4380.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	3.09982303297982	3.06627257548439	2.95455264270873	2.94592619756891	3.76702769245276	3.41028153111213	3.49885729502886	3.78434175120602	2.24377653067947	3.59485678862849e-05	0.000847840660562581
Merged-chr3-55817107-4	chr3	55816977	55817177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 39 of 57)	intron (NM_030595, intron 39 of 57)	-30028.0	NR_033592	71182.0	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo	5.04732207385192	5.17174859691568	5.2179367293765	5.5266926092064	5.3151720358074	5.18866769909548	5.34093226093579	5.36396248594174	0.0521323927050088	0.864139696122749	0.94895782634681
Merged-chr1-39602637-4	chr1	39602534	39602734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25287.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	5.6548069673438	5.3909828607447	5.60516253408702	5.87550688048204	5.51025020499773	5.67209085947301	5.38318256984123	5.34460926843064	-0.299186231307116	0.293650420376222	0.606128617967717
Merged-chr9-110887634-4	chr9	110887497	110887697	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153354, intron 8 of 25)	intron (NR_153354, intron 8 of 25)	7275.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	3.99022548429021	3.79121048170176	4.08450862083997	4.13566294397471	4.00249049706991	3.7151849758913	4.02105705102589	4.28930458581774	0.029277219266068	0.947779920015995	0.981348536548879
Merged-chr2-152104882-4	chr2	152104794	152104994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029688)	promoter-TSS (NM_029688)	-630.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	5.4710120739557	5.43944576180911	5.50041473660216	5.43126529865011	5.58869149272374	5.8072683989268	5.52755355753762	5.7271963404286	0.349572335808364	0.184683950857804	0.482301839525521
Merged-chr8-117262904-4	chr8	117262796	117262996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	5877.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	5.96069066923342	6.2850310666537	6.048318406061	5.79805666527695	6.10008068491688	6.04512252523225	5.95343012744918	5.91191347677001	-0.0249275810931278	0.921125250391831	0.970769099300258
Merged-chr2-159607769-3	chr2	159607668	159607868	+	711.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-339573.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	3.78655575158659	3.45819217732307	3.55125018586111	3.29826587526217	3.40197689626231	3.72096870611458	3.25091816001211	3.05215371279224	-0.5126637911718	0.371518706624887	0.675565348938607
Merged-chr5-125389305-4	chr5	125389224	125389424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019639, intron 1 of 1)	CpG	693.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	8.71402761272275	9.13893634814213	8.97768183397743	8.45579125124981	8.98139369994714	9.31726410048616	9.18654739653016	9.00043369236458	0.351677283192255	0.066501042899488	0.274860859674777
Merged-chr19-15923632-6	chr19	15923531	15923731	+	836.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177420, intron 1 of 8)	MTC|LTR|ERVL-MaLR	991.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	3.80896976558248	3.65913601563578	4.19047275293882	4.08190761859571	3.49654533649328	3.38263901084124	3.3967719168153	3.85566650993703	-1.24718113558295	0.0169484775156824	0.114347707298965
Merged-chr4-46643511-4	chr4	46643406	46643606	+	770.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198664, intron 2 of 12)	intron (NM_198664, intron 2 of 12)	6693.0	NM_198664	381605.0	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	3.37422049235106	3.92549394226506	3.76971292183836	3.84461454255323	3.69997803300731	3.55319570984063	3.54551087957479	3.71798642356545	-0.360218103118593	0.468640908029806	0.747806200655806
Merged-chr7-127904114-4	chr7	127904027	127904227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009739)	promoter-TSS (NM_009739)	54.0	NM_009739	12041.0	Mm.425495	NM_009739	ENSMUSG00000030802	Bckdk	AI327402	branched chain ketoacid dehydrogenase kinase	protein-coding	5.74198212329272	5.23477414333585	6.17998281896129	5.39449483106379	5.3412175776708	5.13087375409731	5.3483994652298	5.45970433156271	-0.609288880778745	0.0689122177047161	0.280532041407148
Merged-chr19-47090328-3	chr19	47090233	47090433	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011053)	promoter-TSS (NM_011053)	292.0	NM_023211	66477.0	Mm.29722	NM_023211	ENSMUSG00000071528	Usmg5	2010301L15Rik	upregulated during skeletal muscle growth 5	protein-coding	4.4497806860955	3.90440017983805	4.11046964637497	4.15336376586424	4.03376745775671	4.18574379479074	4.39181308026416	4.28912231993303	0.154434138021869	0.712064922848124	0.884715833326134
Merged-chr13-20187875-4	chr13	20187760	20187960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 2 of 21)	intron (NM_080288, intron 2 of 21)	97353.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.26328730623312	5.92644523034441	5.81166345490853	5.58031241397574	5.59906821042404	5.65935423964542	5.64198249869356	5.22602062208898	-0.209665889544824	0.481981924169505	0.756927706743915
Merged-chr2-154570669-4	chr2	154570577	154570777	+	846.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007891)	promoter-TSS (NM_007891)	-785.0	NM_007891	13555.0	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|Tg(Wnt1-cre)2Sor|mKIAA4009	E2F transcription factor 1	protein-coding	3.82774597098256	3.58878660853562	3.6073220990741	3.93861216960184	3.79857937418666	4.09486721448448	3.99879318510941	3.82607789382229	0.477218578446652	0.304361591416264	0.616988329768724
Merged-chr4-125127443-4	chr4	125127327	125127527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153159, intron 1 of 5)	intron (NM_153159, intron 1 of 5)	454.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	7.64547669907034	8.0554985346155	7.84926188608611	7.48586186838101	8.06865122816272	8.2705910259825	8.03588162545725	7.53138450906345	0.300081020644956	0.169096379795942	0.46161486940974
Merged-chr5-105696211-4	chr5	105696130	105696330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3739.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	7.37835709508516	7.9259935997788	7.28185294486356	7.60877819065811	7.69421174228745	7.74133961773432	7.77840237179153	7.7033646987709	0.195870804572556	0.323744784311351	0.635236244417733
Merged-chr5-125180163-4	chr5	125180040	125180240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253904)	promoter-TSS (NM_001253904)	-926.0	NM_001253904	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	6.60762400984704	6.98907243158928	7.1249215602092	7.17501255581103	6.16741286330095	6.39949561228122	6.65199546142579	6.33879005171539	-0.869846682143069	0.000215211342590566	0.003865386867084
Merged-chr7-36697488-3	chr7	36697361	36697561	+	869.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172298)	promoter-TSS (NM_172298)	-657.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	3.39316559074296	3.56704399180232	3.12277802486175	3.24348369080881	3.8455732346814	3.78937641542055	3.74843717908372	3.5641418361086	1.31021796892611	0.00977594505036744	0.0776782755905452
Merged-chr14-103096866-3	chr14	103096754	103096954	+	980.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360342, intron 1 of 4)	intron (NM_001360342, intron 1 of 4)	2150.0	NM_001360341	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	3.79669594225839	4.15620566898309	4.27090216832297	4.4715253348033	3.83285337681531	3.91786149371615	3.83806875990519	3.95614100831811	-0.879191861679171	0.0529301992307794	0.239999914068521
Merged-chr1-88655321-4	chr1	88655228	88655428	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46863.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	4.86054950433465	4.50906293864756	5.08495783196193	4.92449163572133	4.40980201871342	4.96232574622681	4.72938769109181	4.6702594753146	-0.342143156853133	0.351730533375026	0.658976301197647
Merged-chr8-111234637-4	chr8	111234523	111234723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	24579.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	5.60477879568642	5.2941551539539	5.17931417984193	5.68721799345659	6.04524199717245	5.61590984120266	5.52490788807199	5.49384446505321	0.390854364116981	0.203681688525687	0.506670123281257
Merged-chr7-130762262-3	chr7	130762168	130762368	+	726.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021314, intron 17 of 17)	intron (NM_021314, intron 17 of 17)	-11801.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	2.73081076479718	3.33827575460578	2.87241250009813	3.13525281400021	2.90656230695004	3.04584920410058	2.98963752624636	3.05814498427858	-0.192319830944532	0.761402397802045	0.906527854829917
Merged-chr8-3251285-4	chr8	3251208	3251408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330056, intron 2 of 21)	intron (NM_001330056, intron 2 of 21)	28309.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	6.78167808820503	6.4752178773637	6.9493613275397	7.10175968170337	6.51557562090302	6.22087141789651	6.80169273005309	6.15270235839735	-0.577420729843913	0.0242570185824755	0.145520869234743
Merged-chr1-7894863-1	chr1	7894763	7894963	+	1000.0	f0_balb.idr	Intergenic	RMER19B2|LTR|ERVK	805943.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	3.10405506831647	2.72523606998966	2.88327696430569	3.52064017972313	2.39356719815121	2.56804507458285	2.4564117403946	2.6158342309625	-3.54718584196516	0.0001281375084201	0.0024988218388587
Merged-chr13-52194631-4	chr13	52194519	52194719	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	97878.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	4.11532657710442	3.51102278425152	4.46691820987641	4.06880467315403	3.40693239259698	3.75563861760106	4.14068597007322	4.35748148783577	-0.295377823586625	0.600275921842446	0.826760171717672
Merged-chr9-104234495-4	chr9	104234454	104234654	+	961.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 5 of 56)	intron (NM_001359740, intron 5 of 56)	28376.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	4.36858011226921	4.33013829740954	4.60524535275487	5.25335785268115	4.95440473634534	4.86477774887803	4.85376187544586	5.15501317362492	0.477432825155112	0.256043944686151	0.567631729492495
Merged-chr4-132962822-4	chr4	132962705	132962905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11290.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	6.13417524972866	6.23989509666536	6.0504659231907	6.06562407058704	6.28059575583617	6.4088531245613	6.36104543826989	5.97869176541719	0.221680413903373	0.342514537453888	0.651536445694174
Merged-chr4-84079824-3	chr4	84079729	84079929	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34950.0	NR_130998	78238.0	Mm.243903	NR_130998	ENSMUSG00000085217	6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA	5.10902939014733	5.04279101025414	5.40555874162828	5.78215687774317	3.24852895718334	3.63400927550563	3.5657286960088	3.57699198363513	-8.11072182070752	2.93549135075095e-14	4.24685648079476e-12
Merged-chr11-5745110-3	chr11	5745000	5745200	+	761.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	L1MB4|LINE|L1	-3924.0	NM_178623	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	3.18851673209412	3.4262527349867	3.25822723766669	3.36855434073776	4.1704052943095	3.43982334821422	3.59795920946796	3.75759936340979	1.46814815392753	0.00647063253653849	0.0573851424518157
Merged-chr1-127827475-3	chr1	127827393	127827593	+	747.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011737, intron 6 of 9)	intron (NM_011737, intron 6 of 9)	12797.0	NM_011737	22625.0	Mm.246566	NM_011737	ENSMUSG00000051590	Map3k19	Ysk4	mitogen-activated protein kinase kinase kinase 19	protein-coding	3.6963327381557	3.50677525418821	3.37867345907326	3.48519465961824	3.68796833476094	3.29577817470289	3.48029382991827	3.54568792607374	-0.00235592573378864	0.996300364565399	0.998602617451138
Merged-chr14-50870489-4	chr14	50870383	50870583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009351)	promoter-TSS (NM_009351)	71.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	5.85208359259929	5.96448529282801	6.40993122031577	5.97513248051822	5.78553988518302	5.90385163227802	6.04312807841603	5.84895370390088	-0.2645171910889	0.307053603870236	0.619334608547937
Merged-chr2-72367394-3	chr2	72367294	72367494	+	628.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 4 of 19)	intron (NM_023057, intron 4 of 19)	81693.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	2.84485105857292	3.30324716293818	2.84512015530619	3.26767964243476	2.90911003844337	3.08750951163244	3.03069250522138	3.21008481610479	-0.124393357117812	0.842752480508076	0.940283196304281
Merged-chr8-120321972-4	chr8	120321877	120322077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93747.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	5.60323847634341	6.14300531064231	5.54553449388229	5.63301548278085	6.28671927866484	6.34649573038053	5.51772686753126	5.94930027431072	0.498723639099888	0.1043275805494	0.355171841205556
Merged-chr1-13652351-4	chr1	13652323	13652523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145381, intron 1 of 6)	intron (NM_145381, intron 1 of 6)	8086.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	5.16577144349758	4.80328232443761	5.76293924260082	5.7695290583913	4.59874919738169	4.49597814878322	4.85999141839915	5.34056791748137	-1.08213945425225	0.0089431441940018	0.0728525045798764
Merged-chr2-70963057-1	chr2	70962957	70963157	+	600.0	f0_c57.idr	Intergenic	Intergenic	55317.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	3.04613812844997	2.89098254234603	2.97436492682903	2.82166201083744	3.3907179740055	3.47839491654184	3.7242283042806	3.65507913601455	2.44510251691224	1.11255085005769e-05	0.000303178625406799
Merged-chr11-22807656-3	chr11	22807534	22807734	+	890.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	52101.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	3.95343688195708	4.1325907171651	4.27857189242471	4.19074225626047	3.84483427886257	4.02282909101492	3.93793941090743	4.46494383510074	-0.156752596768498	0.722238892725637	0.889145957666795
Merged-chr4-126553266-4	chr4	126553160	126553360	+	908.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3720.0	NM_175554	269582.0	Mm.243962	NM_175554	ENSMUSG00000042489	Clspn	B130025E01|C85083|E130314M08Rik	claspin	protein-coding	4.88041287444706	4.68885090348077	4.78031711145825	5.11969644330363	4.33892973219162	4.45188219489903	4.35182429599715	4.36811100581986	-1.14506168960645	0.00178368558691855	0.0213919050364407
Merged-chr12-91736423-4	chr12	91736330	91736530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 3 of 6)	intron (NM_175367, intron 3 of 6)	50006.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	7.17270760656829	7.29262088701445	7.28238335219355	7.67055661235384	7.23915259528113	6.79210359086973	7.30659230581889	6.77301765141422	-0.436682140099641	0.0554910942165495	0.246477416239612
Merged-chr16-90885965-3	chr16	90885878	90886078	+	796.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027627, intron 4 of 6)	intron (NM_027627, intron 4 of 6)	48871.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	3.2891476337189	3.42170781374108	4.06319743536516	3.88234095637016	3.54699092931989	3.53882345665282	3.79019681910178	3.75627630657489	-0.135635192864781	0.802663622014608	0.923936032101707
Merged-chr1-182281458-3	chr1	182281441	182281641	+	929.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007853, intron 1 of 2)	intron (NM_007853, intron 1 of 2)	654.0	NM_001360783	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	3.786501646475	3.96365438724653	3.78707709103059	3.49426078527656	3.61593634972981	3.75442714135931	3.39059323851543	3.2669690857728	-0.759098581509246	0.14974538950933	0.432166457180612
Merged-chr12-77239687-2	chr12	77239587	77239787	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045554, intron 1 of 11)	intron (NR_045554, intron 1 of 11)	948.0	NR_045554	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	3.46767011087883	3.39830267645642	3.77752728220451	3.3548619966811	3.53638703382091	3.75046988775934	3.56524898908248	3.57771731559754	0.349267899396706	0.482168333887174	0.757084112248137
Merged-chr14-47178019-4	chr14	47177909	47178109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008102, intron 1 of 5)	intron (NM_008102, intron 1 of 5)	11404.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	6.64888307540698	6.5948623526261	7.29427038636717	7.22774061527317	6.56026993981367	6.4644538547358	6.91082159339321	6.80890243562636	-0.409188803687296	0.107170535482266	0.361185644163901
Merged-chr10-17560159-4	chr10	17560095	17560295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163033.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	5.05384894960325	4.60361253757455	5.02297065709906	5.32495122543196	4.946436861474	4.44354255969451	4.75282659901951	4.91931763833717	-0.502390960513526	0.176722902189444	0.471902210906975
Merged-chr12-108914212-3	chr12	108914139	108914339	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	19967.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	4.87998645960186	4.91691441590886	4.74764391178364	4.79613906128086	4.2045128739337	4.36546376185635	4.26910920908117	4.3339643947279	-1.24711576011953	0.000629367291589703	0.00927456550170523
Merged-chr10-61121957-4	chr10	61121858	61122058	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 3 of 14)	(GTTTG)n|Simple_repeat|Simple_repeat	25726.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	5.48106117785486	5.69375667107683	4.97838183741801	4.88328506327317	5.81103587560717	5.54208788539856	5.60985694040679	5.65892575633292	0.642188640102005	0.0490055558306531	0.228888722220379
Merged-chr3-95676967-4	chr3	95676888	95677088	+	933.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301705, intron 17 of 17)	intron (NM_001301705, intron 17 of 17)	10929.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	4.52981487907304	4.82642116498754	4.36234594312193	4.32302802324401	4.49407679769906	4.49158652631058	4.15188562764158	4.40373947887379	-0.286602984265839	0.46777782113401	0.747132447671888
Merged-chr3-81107050-4	chr3	81106928	81107128	+	974.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	70612.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	4.76223792889881	4.79139325915099	4.91514031902868	5.53495344278449	4.77430729327	4.93988665248866	5.23196166747365	4.5411653620932	-0.329453689558235	0.403981496696773	0.701206012163242
Merged-chr9-106270067-4	chr9	106269975	106270175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10986.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	5.50148908077622	5.60276480952916	5.47263713490594	5.27843545676103	5.8441238289668	6.0334079103149	5.93561393948897	5.94143685289345	0.800539854322113	0.00191066238631502	0.02257245443909
Merged-chr17-81433295-4	chr17	81433202	81433402	+	974.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 5 of 8)	intron (NR_104580, intron 5 of 8)	305085.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	4.57981577531347	5.55611823430741	5.01829533483281	5.04539978119315	5.3545331941515	5.04815577618456	4.92419258596003	5.01492314089554	0.00382176579906331	0.991768936728596	0.99685270486055
Merged-chr9-110692665-3	chr9	110692572	110692772	+	923.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 2 of 6)	URR1B|DNA|hAT-Charlie	36169.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	4.48292528190817	4.40809374281268	4.91581351918771	4.29674670101985	3.84470085523542	3.7506064908083	3.86716181385523	3.82073509675215	-1.8913781222226	4.09342746814744e-05	0.000951244119344652
Merged-chr9-77750754-4	chr9	77750669	77750869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3766.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	7.96522840357528	7.88717544020795	7.88109183097739	7.80622863542319	7.90825544458798	8.09488199201734	8.11302272882634	7.86095728582085	0.147664359222327	0.366850369388294	0.671222500262489
Merged-chr18-82856608-4	chr18	82856517	82856717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_125720, exon 2 of 3)	non-coding (NR_125720, exon 2 of 3)	720.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	5.93301077679926	6.34713735281309	5.66770913194662	6.04378812519451	6.32084611984157	6.63277166665577	6.34385642202525	6.20939154216732	0.538298671054636	0.0368082464570908	0.191113441868063
Merged-chr16-49859679-4	chr16	49859590	49859790	+	873.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	4036.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	3.63716551945549	3.86060571356267	3.57903083507198	3.85648947577237	3.74554069343751	3.81196634370649	4.05249146917858	3.79701279952534	0.302575245988975	0.512813219163527	0.776017039843318
Merged-chr16-32688983-1	chr16	32688883	32689083	+	722.75	f0_balb.idr	Intergenic	Intergenic	15829.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	3.57539053044606	3.68190249017996	3.37499074466673	3.20679949056635	2.84189814474285	3.11172168703024	3.24888063443367	3.13540314889308	-1.484419444116	0.0146078083930305	0.102835445911138
Merged-chr6-72490639-4	chr6	72490542	72490742	+	813.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-51084.0	NM_145569	232087.0	Mm.29815	NM_145569	ENSMUSG00000053907	Mat2a	D630045P18Rik	methionine adenosyltransferase II, alpha	protein-coding	3.75238838662396	3.87886643754304	3.6384961359035	3.92845489047472	3.92679867539621	3.97857505417213	3.84221231595812	4.08588795790633	0.402002102164717	0.364999724359734	0.66973384667461
Merged-chr10-127311759-4	chr10	127311673	127311873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171582)	promoter-TSS (NM_001171582)	13.0	NM_001003913	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	7.6140756197385	7.61127953453021	7.42930980158582	7.44733293007443	7.78524867808678	7.73968434750913	7.71655502649327	7.71771089843478	0.286020124663857	0.0856696433565153	0.318793368071592
Merged-chr8-24554652-4	chr8	24554530	24554730	+	953.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145949, intron 2 of 9)	intron (NM_145949, intron 2 of 9)	21703.0	NM_145949	209176.0	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	4.39173353439076	4.73535047163891	4.86635877829047	4.80611599609826	4.60214839244372	4.61562548799857	4.59034778146253	4.64824227586859	-0.229482321636949	0.516197065527687	0.778006346996534
Merged-chr4-41708531-3	chr4	41708434	41708634	+	812.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4983.0	NM_027278	69961.0	Mm.425182	NM_027278	ENSMUSG00000036114	Rpp25l	2810432D09Rik|AW987258|Rppl25	ribonuclease P/MRP 25 subunit-like	protein-coding	2.96081944239008	3.33739952355899	3.15799737230731	3.14004251785927	3.15382636960025	3.32973023776331	3.41680324975315	3.21593939907244	0.459022187651848	0.406469428197802	0.702950099801707
Merged-chr10-8792571-4	chr10	8792466	8792666	+	967.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 4 of 19)	intron (NM_175155, intron 4 of 19)	93504.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.43705716767457	5.2800824978591	4.96103471720823	5.40410716693306	5.26227290412085	5.17626379322322	5.38407344818488	5.0683278132283	-0.114941131759597	0.706067739941703	0.881879743016467
Merged-chr10-21621791-4	chr10	21621685	21621885	+	856.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027968, exon 3 of 3)	non-coding (NR_027968, exon 3 of 3)	28640.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	4.20629252896126	4.03832819270124	4.29718162337802	4.37866014395307	4.67291771951449	4.46833891023112	4.18863867403007	3.88949929175818	0.255394403714901	0.559739720080239	0.803989779751616
Merged-chr11-96034848-4	chr11	96034734	96034934	+	985.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033568)	promoter-TSS (NM_033568)	-51.0	NM_033568	27681.0	Mm.372235	NM_033568	ENSMUSG00000006058	Snf8	D11Moh34	SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)	protein-coding	5.74509783304043	5.85149387654871	5.00077702608548	5.28225808028571	5.77245372059604	5.89607748330512	5.48646789355226	5.71826968684088	0.365162099512015	0.249698557068012	0.560749495797661
Merged-chr18-68160048-4	chr18	68159918	68160118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	Tigger6a|DNA|TcMar-Tigger	-67928.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	7.3708205071539	7.36069867835324	7.68834793147852	7.17585032917386	7.17922607690527	7.11178582365592	7.02917878680919	6.88684674247122	-0.464738919967897	0.0228055324407826	0.139503209921617
Merged-chr6-39527959-4	chr6	39527861	39528061	+	956.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172477, intron 1 of 18)	ORR1C2|LTR|ERVL-MaLR	29873.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	5.21393109873983	5.10944202083773	5.11986798187023	5.02815268857848	5.56030785291161	5.35697103276351	4.88261200760634	4.8226221795207	0.173976816122788	0.60861170871457	0.830703806680749
Merged-chr1-161885896-3	chr1	161885805	161886005	+	905.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9223.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	3.24606028560696	3.48605186242271	3.17187866575145	3.21224339875188	4.29604886718448	3.80309144011797	3.61102837565179	4.12154390721504	2.19713923711096	2.90781033954618e-05	0.000707365113323848
Merged-chr9-99183472-4	chr9	99183367	99183567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-43256.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	7.64003350472527	8.02907353740263	7.69236433532591	7.71761744036851	7.90898523206665	7.95044211244567	7.84700154952911	7.3978432666827	0.0212948319242573	0.914334904949837	0.967950384482346
Merged-chr5-142630514-4	chr5	142630397	142630597	+	891.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178398, intron 1 of 11)	intron (NM_178398, intron 1 of 11)	913.0	NM_178398	74781.0	Mm.29432	NM_178398	ENSMUSG00000029578	Wipi2	1110018O08Rik|2510001I10Rik	WD repeat domain, phosphoinositide interacting 2	protein-coding	3.59184956253812	3.97427427301607	3.59228429814112	3.72833752175283	4.03946003439347	4.36032682344334	4.00469073828144	3.97356110173877	1.00428989064019	0.0269099724656738	0.155947005160655
Merged-chr18-12640679-4	chr18	12640551	12640751	+	979.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2882.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	5.1656772747068	6.18327570064458	5.78327398191764	5.15685822918045	6.36239642419846	6.29914089092579	5.86993861311787	5.56624274841218	0.674728182904048	0.0607556591166221	0.260435233981454
Merged-chr6-92437362-3	chr6	92437236	92437436	+	938.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134461, intron 2 of 7)	intron (NM_001134461, intron 2 of 7)	44056.0	NM_001134460	243548.0	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	3.10771754802423	3.02525636420105	3.38701420802758	3.1882153337881	3.87560693282114	3.68621804960862	3.8427777040833	4.13437076561603	2.31407055944501	1.49682171274019e-05	0.000395186471406284
Merged-chr11-54762846-4	chr11	54762766	54762966	+	926.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 1 of 5)	intron (NM_178626, intron 1 of 5)	24837.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	4.9330447686243	5.22266851796101	4.90032019271633	4.83147408903857	4.5982741438937	4.63788828799254	4.34028517549071	4.75325200552922	-0.808954318950767	0.0226554149252277	0.139047441707985
Merged-chr13-23756985-4	chr13	23756917	23757117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178193)	promoter-TSS (NM_178193)	80.0	NM_178193	326620.0	Mm.261642	NM_178193	ENSMUSG00000069266	Hist1h4b	-	histone cluster 1, H4b	protein-coding	6.59504515457235	6.87014952668259	7.15285668143718	7.00434967326977	6.81289288802316	6.79027677686179	6.81716499949811	6.74804447344114	-0.187058762455745	0.372360144853771	0.676179108629457
Merged-chr12-100168151-2	chr12	100168051	100168251	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8498.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	3.68025145827078	4.41860235085239	3.79140559412872	3.84268638658019	4.0509819411436	3.67793800669336	3.60860768771543	3.78926366558509	-0.468492173153409	0.357381430336553	0.663494847536382
Merged-chr5-115134933-4	chr5	115134824	115135024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175352)	promoter-TSS (NM_175352)	51.0	NM_175352	106840.0	Mm.29241	NM_175352	ENSMUSG00000046562	Unc119b	AA407659|AI414892	unc-119 lipid binding chaperone B	protein-coding	6.4879025446508	6.54469248375308	6.03589707658628	5.91155118415321	6.30741164404852	6.23599580569421	6.59019229842047	6.07617363539293	0.0797257220951317	0.767125935247272	0.908887876308164
Merged-chr2-71275490-4	chr2	71275342	71275542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 17 of 17)	intron (NM_172436, intron 17 of 17)	63496.0	NM_010064	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	5.63500166447952	5.24922023292861	5.90363131251809	5.53084113381712	5.47934608923723	5.56532080307424	5.44962595480046	5.25885245676135	-0.25708923500528	0.382278055259647	0.684352653840237
Merged-chr15-101138845-4	chr15	101138740	101138940	+	884.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277255, intron 10 of 11)	intron (NM_001277255, intron 10 of 11)	10318.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	4.33040910991048	4.06548978140052	4.2332095382264	4.14301157884924	4.60598410360604	4.75951656281111	4.87007262888345	4.79710316747709	1.28416915245896	0.000397903288758722	0.00641793750069274
Merged-chr2-45840598-3	chr2	45840497	45840697	+	876.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143992.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	3.73983757750385	3.60349722852279	3.7919663679944	3.81375372866324	3.65506159375606	3.85903962970329	4.00310375154538	3.78978249218248	0.246172415172653	0.589809520858555	0.820587007392175
Merged-chr14-19771440-4	chr14	19771364	19771564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008695, intron 4 of 20)	intron (NM_008695, intron 4 of 20)	20207.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	6.69407132939366	6.5056094396663	6.81576626825694	6.84835477694414	6.50667976626984	6.10578489576095	6.34404468482776	5.69618078756643	-0.75733302469755	0.0036805507022767	0.0375004177551322
Merged-chr8-47691778-5	chr8	47691626	47691826	+	943.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-16567.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	3.59926711580817	3.46996243741791	4.13715008193842	3.72792103616555	3.51456193448487	3.53703885069128	3.52948185784743	3.75474942441874	-0.521374472829828	0.306806761961554	0.61919661675327
Merged-chr2-59243629-5	chr2	59243563	59243763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	82813.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	5.98144419885557	4.91646687673113	5.78313410953913	5.92235547013308	5.17505590849388	5.0588594504618	5.15924543431673	5.34372529770374	-0.926590686073194	0.00799722560621036	0.0671742413764984
Merged-chr1-128597481-3	chr1	128597424	128597624	+	769.277771	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-5225.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	3.82806663279547	3.73138793247391	4.19666404997755	4.42790602593396	3.50037299949788	3.89537660671561	3.70338541786753	4.0233708761518	-0.829757643184106	0.100830716186179	0.348517921012773
Merged-chr10-94345732-3	chr10	94345620	94345820	+	861.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	33771.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	2.93913748633414	3.00484699774295	3.0229467540915	2.53875145958787	4.13944941288828	4.12415299156574	3.75279050620075	4.02932810523053	4.90292332837085	1.11256519844899e-13	1.44509631862045e-11
Merged-chr6-89311695-4	chr6	89311612	89311812	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-25987.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	5.46508940412668	5.69477913470029	5.602387050438	5.96218984763284	5.60767303935706	5.12501857061024	5.40984808429074	5.5184760083228	-0.46811156653796	0.113373397958593	0.372309346864808
Merged-chr7-81835618-4	chr7	81835515	81835715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6184.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	6.41662775395658	6.69256367048156	6.38348547481676	6.15086545142576	6.12824715246969	6.31162810559972	6.45040027706332	5.89891037379904	-0.31035278344186	0.222995736691628	0.531069778572449
Merged-chr19-16140804-4	chr19	16140701	16140901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	7970.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	7.31189809385795	7.43840501817559	7.25039813729144	7.35534096318835	7.36599886319048	7.26768742851978	6.7545082414862	7.08543720742311	-0.266895172327615	0.194343534066849	0.494755332451119
Merged-chr3-65943500-4	chr3	65943404	65943604	+	968.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14745.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	5.17684719577969	5.24659419322347	4.76787906677249	5.09786843022364	5.02336578791804	5.09343789331658	4.70518250741454	4.4482593403844	-0.470917496297213	0.187704652182829	0.486108305395706
Merged-chr16-30185057-3	chr16	30184960	30185160	+	796.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82472.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	2.96603136797709	2.70484646086538	2.91271376292603	2.73504249988775	2.64439909277805	2.55282155052628	2.78666477782921	2.73297758710155	-0.727021470970825	0.268939385273367	0.580490538993026
Merged-chr9-103241896-4	chr9	103241858	103242058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11672.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	4.3903020457791	3.58747807236976	4.54615228947494	4.457882655349	4.25491981941462	3.95818601695597	4.37052061917884	4.68089947591587	0.10443807099611	0.835545037764866	0.93747257634088
Merged-chr10-41519949-1	chr10	41519849	41520049	+	1000.0	f0_balb.idr	intron (NM_016898, intron 1 of 5)	CpG	449.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	5.28250276354159	5.19975977078968	5.31336032307432	5.39432866894303	5.29013119985123	5.07714564236215	5.0972493632151	5.5751234109838	-0.0492985435375676	0.869776838479104	0.951098360593368
Merged-chr4-32586756-2	chr4	32586656	32586856	+	604.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001109661)	TTS (NM_001109661)	-15094.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	2.77296737945697	2.63772223117312	3.25229001786193	2.84475378117372	3.04639777492359	3.08455841833435	3.08021855937409	3.09091357437435	0.754797573346145	0.230591530452513	0.54010980638755
Merged-chr17-23706902-4	chr17	23706820	23707020	+	974.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19416.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	4.91519388547408	5.32932029910716	5.72488066150926	5.02093937576681	5.19603607552005	4.84323050542358	4.8534703735053	5.39408349905972	-0.33734202547806	0.351499404695372	0.658893189148013
Merged-chr4-145246365-3	chr4	145246229	145246429	+	988.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	541.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	4.6576290046695	4.84659259230766	5.10878844011881	4.7816444464406	4.67936506766529	4.70574398194112	4.82781925187252	4.91727503913882	-0.145734069242667	0.667001979706425	0.862204789067879
Merged-chr17-6055113-2	chr17	6055026	6055226	+	938.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360148, intron 10 of 15)	intron (NM_001360148, intron 10 of 15)	24613.0	NM_001111017	321007.0	Mm.5548	NM_177311	ENSMUSG00000015659	Serac1	4930511N22Rik|D17Ertd141e	serine active site containing 1	protein-coding	3.32317291858172	3.24446984632314	3.42727585731993	2.94839235246596	3.04336849345089	3.13192774067769	3.25555950833314	3.26668059920562	-0.239057138731704	0.677996738601061	0.867963917899731
Merged-chr2-52513021-4	chr2	52512918	52513118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	45593.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	6.8207398635034	7.59454789833799	7.24199936417908	6.89953021239173	7.30776937099392	7.0708534083848	7.04994082054305	6.67777702280474	-0.168402015184905	0.5026300356534	0.769788779322088
Merged-chr9-103175244-1	chr9	103175144	103175344	+	613.0	f0_c57.idr	intron (NM_173781, intron 7 of 7)	intron (NM_173781, intron 7 of 7)	26821.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	3.1748213286489	3.13953706511559	3.3045428074184	3.31301334571466	3.44230548689019	3.41946720640941	3.61427601400674	3.8868209190115	1.21846740588506	0.0215085331648138	0.134329725553942
Merged-chr6-16903549-2	chr6	16903449	16903649	+	766.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS_Mm|LTR|ERV1	-5108.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	3.22920058880863	3.25190017058236	3.11018023457729	2.6716155739998	3.14202368061217	3.22339863219894	3.42413359667881	3.16956984825543	0.628572301273421	0.305896735206825	0.618369933125631
Merged-chr11-60697692-3	chr11	60697587	60697787	+	874.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2003.0	NM_001159405	16897.0	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	LLGL1 scribble cell polarity complex component	protein-coding	3.9667485538904	3.80063751152454	3.55203175486582	3.46099170394245	3.877707091373	3.94860865881466	3.41295535358941	4.05044748292885	0.412049378651747	0.416657690835683	0.71063511686235
Merged-chr2-84890082-4	chr2	84889956	84890156	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3364.0	NM_199223	269295.0	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	4.80088814518493	4.97451641671139	4.83891149442936	5.03691802542828	4.81515185999754	4.53908208368515	4.77907328804473	5.09933915055634	-0.204020421738358	0.548818102301476	0.797654341154832
Merged-chr6-122604503-4	chr6	122604429	122604629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008108)	TTS (NM_008108)	-2085.0	NM_001134391	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	6.50540177179994	6.42870561365267	6.26964019654907	6.14334527455644	6.76204329956216	6.82323870006904	6.56872688596839	6.62815818907304	0.540601068538128	0.0133037696501357	0.0965683275471151
Merged-chr17-33955279-1	chr17	33955179	33955379	+	1000.0	f0_c57.idr	promoter-TSS (NM_001357330)	promoter-TSS (NM_001357330)	362.0	NM_011296	20084.0	Mm.298745	NM_011296	ENSMUSG00000008668	Rps18	H-2Ke3|H2-Ke3|Ke-3|ke3	ribosomal protein S18	protein-coding	4.55416987799382	4.58725138132071	4.76289568269385	4.20993321260872	5.07146528793862	5.04675500766714	4.84957190621544	5.23451215633947	1.11154260127355	0.00154681873540876	0.0191447703286999
Merged-chr7-88128665-4	chr7	88128563	88128763	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001143834, intron 10 of 10)	intron (NM_001143834, intron 10 of 10)	-149422.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	5.09386339825291	5.79143869611439	5.47207334433059	5.2919806271839	5.49033823738574	5.61859939066609	5.57270745528421	4.66521722697127	-0.0824450477304565	0.820274065592965	0.931216561407907
Merged-chr7-139235035-4	chr7	139234925	139235125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027164, intron 8 of 10)	intron (NM_027164, intron 8 of 10)	-13457.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	6.04572876611787	6.06649378643592	5.95735437350392	6.01469716615671	6.09907134383456	6.2852872190619	6.4166810191586	6.08490697803349	0.310889428590681	0.181892967710011	0.478542212109808
Merged-chr1-191111369-4	chr1	191111271	191111471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12957.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	7.5320073635768	7.2382110745726	7.67388118603702	7.50608626226049	7.13081972034405	7.17267727903942	7.0372032578401	7.47445377024855	-0.37994454989675	0.0567939666615191	0.249647239733234
Merged-chr18-63692439-4	chr18	63692349	63692549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016792)	promoter-TSS (NM_016792)	-90.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	7.96821545665851	8.0131172821322	7.68864493672856	7.80400248460728	8.15679377908893	8.24780175046172	8.26020875206988	8.19909046162917	0.439277097143603	0.00696156211705391	0.0606433765671008
Merged-chr2-155276863-4	chr2	155276774	155276974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046364, intron 1 of 2)	CpG	510.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	6.6157621770118	6.61084901523404	6.28922497024778	6.52631171650698	6.48377740697191	6.52383145317502	6.73922119810495	6.32348371590396	0.00838310814428513	0.969784659485528	0.989095984799937
Merged-chr5-9059566-4	chr5	9059486	9059686	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41151.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	4.79161478931912	5.14181945315784	5.22245120534931	5.15093847745023	5.59809129218172	4.93010995731398	5.16603956105272	5.21883665567921	0.324938858402638	0.325639650848169	0.63719773223339
Merged-chr11-97575885-4	chr11	97575786	97575986	+	845.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018873)	promoter-TSS (NM_018873)	-760.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	4.380983895529	4.78726684256363	4.0453304613104	4.02501663626158	4.32934346260448	4.376141205864	4.274962111611	4.46072522507269	0.04112528205917	0.923841682330441	0.971863340184091
Merged-chr7-80642082-4	chr7	80641980	80642180	+	818.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040343, exon 5 of 5)	non-coding (NR_040343, exon 5 of 5)	6063.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	4.0784659980826	3.87339404269658	4.03125410086838	3.93101339436451	4.01435785501314	4.15509383338784	4.15093142019608	4.29162483550979	0.465495012229286	0.256556642649973	0.568162252716061
Merged-chr13-88821867-4	chr13	88821810	88822010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010103, exon 1 of 10)	5' UTR (NM_010103, exon 1 of 10)	438.0	NM_001037987	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	4.93927453746561	4.40612963164645	5.43772135839538	4.98820963136592	5.4841330861587	5.15512953114004	5.53137388031158	5.11387142362275	0.647669554422377	0.0779877003040773	0.30203225915491
Merged-chr3-144688423-3	chr3	144688327	144688527	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019464, exon 9 of 9)	3' UTR (NM_019464, exon 9 of 9)	31908.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	4.84691282739575	4.62640741075235	4.91107844145187	5.02515659500233	4.17359024304684	4.13394231935195	4.21546795106026	4.55350676723918	-1.34093795687028	0.000498310490690618	0.00769231021836207
Merged-chr5-123136989-4	chr5	123136888	123137088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4359.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	5.24068846279258	5.28409393653043	5.00298199132275	5.26371815093858	5.07847571918477	5.31983184692541	5.41496222892885	5.43854205642399	0.186510694546023	0.532082906797457	0.787872711035769
Merged-chr17-23664716-3	chr17	23664634	23664834	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153784, intron 2 of 9)	MIRb|SINE|MIR	4228.0	NM_153784	212733.0	Mm.59997	NM_153784	ENSMUSG00000043782	Bicdl2	BICDR-2|Ccdc64b	BICD family like cargo adaptor 2	protein-coding	3.16276992642354	3.31517585445385	3.28444255527048	3.18476213624295	3.52229897932521	3.45436106369807	3.21383747507719	3.28273789044492	0.518965250962323	0.324278517016919	0.635862825420035
Merged-chr11-53796068-3	chr11	53795961	53796161	+	938.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	25588.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	3.99081767361959	3.83119723220736	3.89321729114978	4.1314451563595	3.650796351328	3.85084148784052	3.71631785102754	4.38964993733712	-0.107302888201512	0.824490771583191	0.932696938095671
Merged-chr9-42945368-4	chr9	42945316	42945516	+	928.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1045.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	3.95488672423937	4.06018292698796	4.05679095605568	4.08340388094954	4.15587974869033	4.07867664621272	3.88628484878652	4.56733025814298	0.393379145084659	0.361345818445499	0.66667409966046
Merged-chr19-4046018-3	chr19	4045912	4046112	+	586.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3791.0	NM_181796	14869.0	Mm.441542	NM_181796	ENSMUSG00000038155	Gstp2	GSTpiA|Gst-3|Gst3	glutathione S-transferase, pi 2	protein-coding	3.06418589452634	3.27324619402332	2.92441147248184	2.60310518112906	3.39665247691064	3.3078271502884	3.17931906314428	3.68685036774912	1.60256664801324	0.0116008805330587	0.0877201327428096
Merged-chr12-8359616-3	chr12	8359461	8359661	+	954.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	46128.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	2.84582462605694	2.96458828100971	2.76500245595056	2.6700629556838	3.80524301591853	3.64338304811837	3.35336041411408	3.41918212911032	3.09987310488839	2.97252858325132e-07	1.15429139131067e-05
Merged-chr7-81904361-4	chr7	81904277	81904477	+	944.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013886, intron 2 of 5)	MLT1J|LTR|ERVL-MaLR	30082.0	NM_013886	29877.0	Mm.392934	NM_013886	ENSMUSG00000025104	Hdgfl3	2700022B06Rik|HRP-3|Hdgfrp3	HDGF like 3	protein-coding	4.66330121086727	4.27034019730747	4.45120827338792	4.75042874352446	4.78029079029574	4.75757328041368	4.85618973585925	4.90930211909945	0.556144443032816	0.121638897104914	0.386326385106567
Merged-chr8-75097009-4	chr8	75096920	75097120	+	633.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010442, exon 3 of 5)	exon (NM_010442, exon 3 of 5)	3402.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	3.89588821484558	3.78428333429945	4.3182465261282	3.38904918778463	3.66715595849657	4.02063066513269	3.77682294624519	4.03576848702051	-0.00149726567216594	0.997689188043952	0.999032258328017
Merged-chr17-56303250-4	chr17	56303126	56303326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010931)	promoter-TSS (NM_010931)	-111.0	NM_010931	18140.0	Mm.42196	NM_010931	ENSMUSG00000001228	Uhrf1	AL022808|ICBP90|Np95|RNF106	ubiquitin-like, containing PHD and RING finger domains, 1	protein-coding	6.59823873932416	6.97115641262098	6.04515412357179	6.08243043995436	6.96626332116074	6.96176451853471	6.61088085256936	5.80582239886266	0.256881052436847	0.601615012692892	0.827133488921953
Merged-chr11-100725640-4	chr11	100725507	100725707	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 1 of 5)	MIR3|SINE|MIR	11757.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	4.98305883123665	4.90220185905936	4.55739209639436	4.67591613018117	5.12128232826222	4.86460562647262	4.82159939024567	5.04467510953401	0.388110449884022	0.246184960667952	0.557442319560494
Merged-chr6-124737192-4	chr6	124737100	124737300	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 1 of 15)	MIRb|SINE|MIR	1509.0	NM_001077705	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	4.99660169798482	4.50395906583597	4.22706283941124	4.58270755937278	5.9559382977469	5.57990483138441	5.17505805412925	5.80973848471253	1.97217339149152	6.55905611724795e-08	2.92706617786578e-06
Merged-chr10-119040015-4	chr10	119039888	119040088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152787, intron 3 of 3)	intron (NR_152787, intron 3 of 3)	10511.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	5.36513545072135	5.22464024808648	5.70131533137274	5.53055343489414	5.29286876486749	5.209572805091	5.50408261662992	5.30186122854641	-0.244384296830339	0.402721707559687	0.700189859986795
Merged-chr2-29827244-4	chr2	29827145	29827345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026615)	promoter-TSS (NM_026615)	-144.0	NM_026615	68205.0	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	7.65634234524916	8.14833660904441	7.38263339600944	7.62260324143714	7.90040516077507	7.80061712475343	7.70230134665957	7.66088342792435	0.0473887166632791	0.820959149411233	0.931443689364036
Merged-chr5-108032001-4	chr5	108031894	108032094	+	783.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-33680.0	NM_001359088	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	3.43096071256977	3.78159619938835	3.66417967232372	3.69737082585395	3.49209399750228	3.67024095371226	3.53952337415411	4.10656983684382	0.210164569486745	0.678515853873637	0.868112820688421
Merged-chr11-121354429-4	chr11	121354297	121354497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025793)	promoter-TSS (NM_025793)	50.0	NM_025793	66840.0	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	7.64294014063631	8.05681029634425	7.87815347762473	7.49111619755414	7.80382172476332	7.71443939302876	7.38267277045127	7.74574451593639	-0.138347296293697	0.497767148750244	0.767177703503315
Merged-chr17-25285274-3	chr17	25285183	25285383	+	668.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10973.0	NM_011665	22196.0	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	3.10133416510988	3.13778461976751	3.21265718808688	2.97015120512654	3.24923729287622	2.95286435538407	2.97049283741306	2.9138222221755	-0.262165496105275	0.658529163739584	0.857904281262009
Merged-chr11-86840066-4	chr11	86839934	86840134	+	927.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32374.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	3.90287350866596	4.07072743357786	3.85136826528664	3.82637142116768	3.75296440094181	4.02600754476644	3.78219539144599	4.36527166931515	0.238163408218495	0.603604524390403	0.828211834437697
Merged-chr12-69198077-8	chr12	69197977	69198177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033222, exon 2 of 2)	non-coding (NR_033222, exon 2 of 2)	352.0	NM_027269	109065.0	Mm.107180	NM_027269	ENSMUSG00000020973	Dnaaf2	Ktu|TU54|kintoun|mknt	dynein, axonemal assembly factor 2	protein-coding	5.104461075023	4.70579688066723	5.49016409342712	5.39315176449634	5.31814419487904	5.13783980702766	5.30032644185016	5.51148926627927	0.198963740727273	0.551218786579121	0.798837168776829
Merged-chr15-66476090-4	chr15	66475986	66476186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019457, intron 3 of 11)	intron (NM_019457, intron 3 of 11)	24824.0	NM_019457	54562.0	Mm.244890	NM_019457	ENSMUSG00000022375	Lrrc6	LRTP	leucine rich repeat containing 6 (testis)	protein-coding	6.04075555870797	5.83136413918358	5.57354023820546	6.14178929506591	6.10291324568958	5.7816144749323	6.07089413353419	5.99565095929734	0.108440298201539	0.682173077670003	0.869682098720609
Merged-chr14-55591677-4	chr14	55591557	55591757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011190)	promoter-TSS (NM_011190)	-85.0	NM_194346	268749.0	Mm.23748	NM_194346	ENSMUSG00000047098	Rnf31	AL033293|BC031509|Flj10111|HOIP|Paul|mFLJ00217	ring finger protein 31	protein-coding	8.30613538248666	8.19446580184658	8.25768856325628	8.12530867019661	7.94101292919547	8.15836414750331	8.13737227700819	8.09617655467896	-0.174839577089425	0.267468418130431	0.579177784876944
Merged-chr15-91168201-7	chr15	91168096	91168296	+	900.9761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011994, intron 6 of 9)	intron (NM_011994, intron 6 of 9)	23811.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	3.59176638888272	3.41059258415689	3.87801217965433	3.41023518706009	3.75531600882465	3.59700693130924	3.28332535353277	3.64247553046764	0.0244185147000001	0.962762762913649	0.986713566358706
Merged-chr10-62945339-4	chr10	62945230	62945430	+	975.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175194, exon 9 of 9)	3' UTR (NM_175194, exon 9 of 9)	-1699.0	NR_152862	327762.0	Mm.21492	NM_177372	ENSMUSG00000036875	Dna2	Dna2l|E130315B21Rik	DNA replication helicase/nuclease 2	protein-coding	5.18067796283917	5.33273710392348	5.18155537984711	5.68736078256854	5.14759174691281	4.75408388291568	5.27986762825025	5.54462680360022	-0.302925941455295	0.374628972747242	0.677891254741963
Merged-chr14-21049065-4	chr14	21048969	21049169	+	706.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018829, intron 1 of 8)	B3|SINE|B2	3373.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	3.86273386872399	3.97280092535909	3.75250970211502	3.64487216194408	4.02762039652719	4.23025626755831	4.12919686109599	4.1023708166093	0.869868358953133	0.0414933606473396	0.206313557081704
Merged-chr11-55461314-4	chr11	55461202	55461402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009720)	promoter-TSS (NM_009720)	-94.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	8.89207809146563	9.22057355638266	8.87792833012261	8.67401001616233	9.12109408779439	9.23074323633355	9.15329644562067	8.9517768066453	0.234642627583224	0.169918624146466	0.462828629577578
Merged-chr17-44256735-3	chr17	44256637	44256837	+	628.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172621, intron 4 of 5)	intron (NM_172621, intron 4 of 5)	68165.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	3.23107098005925	3.06640184859418	3.43571892979768	3.27887247449742	3.14622336357695	2.95414603935993	2.97912200407598	3.17317395282615	-0.74268598955372	0.200237807764292	0.502259964838292
Merged-chr8-8690563-4	chr8	8690475	8690675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176849)	promoter-TSS (NM_176849)	-38.0	NM_176849	234023.0	Mm.251655	NM_176849	ENSMUSG00000040459	Arglu1	9430010O03Rik|C130008N12	arginine and glutamate rich 1	protein-coding	7.62590235319313	7.72875553784081	7.54638404848717	7.56304162102009	7.89619048818327	8.02691248598515	7.94238964020209	7.39379568092181	0.289079711378172	0.136548672532835	0.411042630338623
Merged-chr13-70637775-3	chr13	70637680	70637880	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144837)	promoter-TSS (NM_144837)	-146.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	6.98784408313189	6.95745053898652	7.14566422603925	7.13914789355249	6.98442748660367	7.11362698774263	7.15414391053361	7.23844693360644	0.0771805088776298	0.682545578492399	0.869897611980707
Merged-chr1-165460578-4	chr1	165460482	165460682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027430)	promoter-TSS (NM_027430)	-119.0	NM_028759	74106.0	Mm.227605	NM_028759	ENSMUSG00000026571	Dcaf6	1200006M05Rik|Iqwd1|PC326	DDB1 and CUL4 associated factor 6	protein-coding	8.23487609907106	8.31643684773505	8.3166086861761	8.24728663747155	8.50961920646501	8.51078884720159	8.48688067237402	8.327761982347	0.233216166192486	0.116503117689219	0.377635281883107
Merged-chr13-67779673-4	chr13	67779575	67779775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028402)	promoter-TSS (NM_028402)	-18.0	NM_028402	72958.0	Mm.53849	NM_028402	ENSMUSG00000090659	Zfp493	2900054J07Rik|Rslcan12	zinc finger protein 493	protein-coding	7.38092810684596	7.3532611660009	7.51671651491161	7.53011719108498	7.74525832513109	7.50777752996884	7.55881352154969	7.31471561276765	0.128706176026395	0.485630226591501	0.759423378046805
Merged-chr15-78447866-3	chr15	78447763	78447963	+	917.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355601, intron 10 of 17)	intron (NM_001355601, intron 10 of 17)	19299.0	NR_110357	72844.0	Mm.390816	NM_001081367	ENSMUSG00000033287	Kctd17	2900008M13Rik|AA414907|AW742389|N28155	potassium channel tetramerisation domain containing 17	protein-coding	3.98746490522686	4.00379337787879	3.5763841452738	3.60288625467213	4.18679513984526	3.69426323036939	3.83223333601521	3.44820764333695	0.0708793079659233	0.891539516807385	0.959385213525176
Merged-chr10-80798541-4	chr10	80798396	80798596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013651)	promoter-TSS (NM_013651)	130.0	NM_023900	78670.0	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	6.91555552099344	6.99809497103315	6.91676593417318	6.55129081642929	7.06815525284597	7.08011771040754	6.92045706620279	7.00073088978637	0.249026900195563	0.229719868919009	0.538813547740569
Merged-chr13-35955998-3	chr13	35955899	35956099	+	929.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11907.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	4.12090229246408	3.90685154630825	4.31942320483394	4.03681785689319	3.46515127669385	3.78392882684102	3.5883179304132	4.16098274363271	-0.926619368896649	0.0608817918107657	0.2608028074037
Merged-chr13-44536645-3	chr13	44536546	44536746	+	900.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96919.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	3.36313118525317	3.6714330135385	3.67203576511602	3.5443719412826	3.41132535377932	3.47765901015221	3.09909636650413	3.03478386455235	-1.03834688255387	0.0681386356370836	0.278653609994353
Merged-chr7-122356671-4	chr7	122356571	122356771	+	985.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	L1MB2|LINE|L1	67546.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	5.3167756010468	5.34966201831479	5.6135762983196	5.77740527999137	5.18397641451079	5.03019304352604	5.32105414992053	5.21973800246498	-0.627872016700902	0.0375234429616137	0.193457999896038
Merged-chr3-138889418-3	chr3	138889303	138889503	+	906.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_121195, intron 2 of 7)	intron (NR_121195, intron 2 of 7)	147195.0	NM_019571	56224.0	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	4.0744550586559	3.82540123988058	4.07507800148952	3.98086315538342	3.89169042106281	3.83083816503541	3.91504351025907	4.31823246674917	0.0325601358695614	0.941016713952624	0.978676631829834
Merged-chr16-42875627-4	chr16	42875529	42875729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040521)	promoter-TSS (NR_040521)	-42.0	NR_040521	75722.0	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA	9.74882209317665	9.8777261298896	10.0789596540702	9.98855548871818	9.9228873890368	10.1376436118286	9.97426296755128	9.70455579013102	0.0164009113505248	0.916082855040968	0.968912323381988
Merged-chr5-113908852-4	chr5	113908761	113908961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011779)	promoter-TSS (NM_011779)	-155.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	8.14325069658179	8.13462369854524	7.80482813283416	7.71564764002578	8.17436489104495	8.16038948882801	8.27551065079582	7.90636603902994	0.23064115780247	0.216383232274213	0.522932824728436
Merged-chr17-56808729-4	chr17	56808622	56808822	+	935.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009056, intron 1 of 16)	intron (NM_009056, intron 1 of 16)	22286.0	NM_009056	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	4.38514167520879	4.40124563454683	4.18319307391086	4.13467384251673	4.85776223667538	4.92345930001972	4.92346678322806	4.74894365233882	1.31198293854142	0.000183650688758831	0.00338654724745203
Merged-chr11-48790446-4	chr11	48790350	48790550	+	861.7374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9910.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	3.96147920985408	4.31971089360179	4.10667360874704	3.6542270772237	4.06988799064328	3.9212797439702	3.94548705118449	4.31343086657716	0.129406655271415	0.779211784106175	0.913841690258744
Merged-chr1-171823369-4	chr1	171823244	171823444	+	975.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16353.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	5.40978178191157	5.49530329150031	5.35405123919947	5.7283554006166	5.11455593421088	4.82376625555391	5.29823995456711	5.19661340302216	-0.721664878676508	0.0184534349958223	0.121372856178861
Merged-chr4-155721786-3	chr4	155721706	155721906	+	940.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026899, intron 2 of 4)	B2_Mm2|SINE|B2	-12998.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	4.11968137808046	4.31763246842361	3.91525708641414	3.54872735553216	4.45070504237676	4.24691363601933	4.27730413422509	4.16431135193322	0.756667772932531	0.097104966927654	0.341417447979538
Merged-chr11-58108230-3	chr11	58108009	58108209	+	840.0476070000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356477, intron 1 of 6)	intron (NM_001356477, intron 1 of 6)	3880.0	NM_001356477	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	3.18752481185352	2.9169339810249	3.03504014952145	3.24965313251005	2.57819011399013	2.61254295766567	2.50259448014985	2.58505478010823	-3.01772448203176	0.000174368018709785	0.00324564362022588
Merged-chr4-62846725-2	chr4	62846625	62846825	+	851.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118849.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	3.33989780090428	3.17211856679579	3.22470704667532	3.43461236724891	3.24733034452347	3.13846687463807	3.57404198906687	3.2821193596437	0.0576000666858713	0.916211233680173	0.968918528564949
Merged-chr4-33285613-4	chr4	33285523	33285723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24688.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	6.37689383693376	6.33883493365858	6.21391233934457	6.37240223579407	6.21122418892994	6.10906788942797	6.22036601798931	6.0870546201518	-0.257613973538167	0.244636617791617	0.555808536831526
Merged-chr13-20172416-4	chr13	20172328	20172528	+	844.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	MTA_Mm|LTR|ERVL-MaLR	81921.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	4.13504089294753	3.9251438943925	4.17859847104892	3.88896910606926	4.14539839462538	4.07021483229267	3.77228932349821	3.99507939081751	-0.0497297547540165	0.908831026548156	0.966100563913989
Merged-chr13-100247176-4	chr13	100247063	100247263	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010870, intron 1 of 14)	intron (NM_010870, intron 1 of 14)	173.0	NM_010870	17951.0	Mm.290476	NM_010870	ENSMUSG00000071203	Naip5	Birc1e|Lgn1|Naip-rs3	NLR family, apoptosis inhibitory protein 5	protein-coding	4.77565375937913	4.81158767652158	4.81767134939332	4.51188512683684	5.20510230706472	5.21664001861947	5.49092408300751	5.5386180623389	1.25286136597378	7.2513564318612e-05	0.00154765906885592
Merged-chr2-158138015-4	chr2	158137915	158138115	+	924.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 3 of 12)	intron (NM_009373, intron 3 of 12)	8377.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	4.52335481867546	4.70050414971815	4.57012491803602	4.198798170361	5.5129291954937	4.79465070940428	5.14828519201005	5.11314870474741	1.39065575516934	0.000120980941210912	0.00237553170053834
Merged-chr13-41263498-4	chr13	41263396	41263596	+	852.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135577, intron 1 of 1)	intron (NM_001135577, intron 1 of 1)	13652.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	3.83827990546792	3.88032861749633	4.08661774457262	4.10966993079497	4.11930795915969	4.2103740331749	3.97627306326029	3.83670683643404	0.139325506099569	0.747329835956613	0.900548716872232
Merged-chr11-105506520-4	chr11	105506412	105506612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49777.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	6.39757386084985	6.36474836609842	6.51574772256386	6.42959996183692	6.63108615863627	6.42642821169749	6.21847115117593	6.20594063387539	-0.0490442284060741	0.829246442062744	0.934397133080848
Merged-chr6-39268830-4	chr6	39268710	39268910	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62037.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	5.17424556880889	5.16313622203528	5.14489656123464	5.45692921763102	4.6105311048244	4.55988100270857	4.88666486604033	4.97837823492804	-0.9646643709598	0.00386551236747954	0.0390329557107144
Merged-chr7-46845122-4	chr7	46845037	46845237	+	683.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102727)	promoter-TSS (NR_102727)	-667.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	3.68338255036959	3.66108118034863	4.09611896245618	4.09280606139323	3.99572048445522	3.74173263948285	3.83829839369196	4.50293688791398	0.394880763545917	0.426990649665581	0.718234557355738
Merged-chr7-28277713-4	chr7	28277602	28277802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177427)	promoter-TSS (NM_001177427)	-4.0	NM_001177427	434156.0	Mm.118535	NM_001177427	ENSMUSG00000070705	Eid2b	3010005C08Rik	EP300 interacting inhibitor of differentiation 2B	protein-coding	5.80257902454331	5.61309616241332	5.03884317438137	5.67495425730684	5.9613269638161	5.93069846346864	5.67896244267708	5.70390935858254	0.425666951019672	0.146466242891988	0.426829916184597
Merged-chr17-71135279-4	chr17	71135177	71135377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48255.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	7.64490236688536	7.13134310557712	8.0887854560758	8.18049632038254	7.56203138210648	7.14965513121258	7.62538350208568	7.57164187437085	-0.444018304246271	0.0814635608276273	0.309632966036617
Merged-chr5-28004603-4	chr5	28004510	28004710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66802.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	5.40662025706603	5.73838508252549	5.47188473577945	6.109321840648	6.13863802337883	6.13599206957176	6.01364258364256	5.74889251894393	0.449849330297901	0.129333435265278	0.400235841430685
Merged-chr5-124862152-1	chr5	124862052	124862252	+	985.6666869999999	f1_balb.idr	promoter-TSS (NM_144819)	promoter-TSS (NM_144819)	69.0	NM_144819	215707.0	Mm.389693	NM_144819	ENSMUSG00000037979	Ccdc92	AW050178|D5Bwg0834e	coiled-coil domain containing 92	protein-coding	3.25413222318899	2.82919034777476	2.92682965457846	2.74340670336969	2.83579021501951	3.03701422654832	2.71800053906914	2.98604225262627	-0.207769615775132	0.744797992068568	0.899349861357637
Merged-chr6-108658152-3	chr6	108658061	108658261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NR_104577, intron 1 of 6)	intron (NR_104577, intron 1 of 6)	-2468.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	7.36743582432816	7.49108247638253	7.06394101307736	7.24300723830082	7.29593311453337	7.1254422239579	7.06465414207992	6.7694407128762	-0.29379638051398	0.160577477125971	0.448788449990163
Merged-chr8-70541141-4	chr8	70541053	70541253	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	1478.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	5.66150724927337	5.13465099903867	5.38399855285326	5.37731952417715	5.08125315059027	4.96340226836009	5.29943570436691	5.53963261998169	-0.29142459405838	0.356924705414469	0.663238634370609
Merged-chr6-87455691-2	chr6	87455591	87455791	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26697.0	NM_009756	12154.0	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	b2b2711Clo	bone morphogenetic protein 10	protein-coding	2.97862501825192	2.75975330838498	2.74912133911326	2.3674511705076	2.73889539743087	2.49583784586007	2.53844168610702	2.92357828091159	-0.211729127782344	0.771855094806727	0.910565396997613
Merged-chr6-5382720-4	chr6	5382621	5382821	+	795.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023048)	promoter-TSS (NM_023048)	-665.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	3.95541679338984	3.54077978594149	3.84444440133822	3.91318236160085	4.44073877712538	4.32766205226911	4.38298720941854	4.4746424810344	1.47370949370203	0.000520324606912173	0.00796991288904704
Merged-chr18-85698142-4	chr18	85698002	85698202	+	811.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-696850.0	NM_001360910	246317.0	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	4.07947773324298	4.19704474380113	4.77685225722794	3.08717260511985	3.88364081149921	4.31075849273313	4.15933386257196	4.68075234952679	0.21170921892222	0.802196891664367	0.923754158062033
Merged-chr17-8506251-3	chr17	8506151	8506351	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20550.0	NM_001290707	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	5.55613220791667	4.70760389054765	5.00806553796901	5.02562505626274	3.65119491535945	3.96394914751332	3.81529949066294	3.68493589221423	-3.5035403603467	6.8332718181932e-12	6.3085013585885e-10
Merged-chr15-59457377-4	chr15	59457272	59457472	+	973.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	83174.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	5.23041007131507	5.63583029536458	5.35548370933811	5.49882477384082	5.61609639869836	5.37448326188681	5.29917237946233	4.9368665029104	-0.183648066667595	0.557594376367653	0.802786163202762
Merged-chr12-100445453-4	chr12	100445352	100445552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	75370.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	5.84842866021415	5.82615179053348	5.89455106676957	6.14904411199706	5.50036995703293	5.46222107945332	6.04824523254724	5.56392425792161	-0.464743953129253	0.0979266428924672	0.34289258729058
Merged-chr11-98941987-4	chr11	98941888	98942088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177303, intron 1 of 8)	intron (NM_001177303, intron 1 of 8)	2277.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	6.63670156214194	6.87675969303159	6.45458731638796	6.61120210598166	6.70655702194641	6.71792489303702	6.73577669157993	6.64854484912957	0.068278665742968	0.742887334543026	0.898691548174051
Merged-chr16-64884107-4	chr16	64884001	64884201	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	32100.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	4.04836454474991	4.0899161448204	3.89469708244625	4.13217309055129	4.00526438568668	4.01643048345167	4.32920172412667	4.2268225269373	0.2484161597011	0.550638601488141	0.798673593705145
Merged-chr6-99435361-4	chr6	99435257	99435457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053202)	promoter-TSS (NM_053202)	-12.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	6.68835901066537	6.27739749739664	6.86281623281265	6.66440744416606	5.34819851867489	5.81162803741817	5.87237275429117	5.87350531858291	-1.40214765670525	1.54298771735438e-07	6.36685928890247e-06
Merged-chr17-80480495-4	chr17	80480417	80480617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009231)	promoter-TSS (NM_009231)	-64.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	6.7017522824312	6.46772290071678	6.58018041706263	6.65570184748052	6.70399826820338	6.89314818779834	6.65415108597529	6.47493390612745	0.118783629530344	0.574065651966037	0.812063655973817
Merged-chr2-24367141-4	chr2	24367045	24367245	+	979.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355231)	promoter-TSS (NM_001355231)	-530.0	NM_001355231	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	4.89158516184895	5.21759276585178	4.72680053186298	4.86959017675667	5.49480068328807	5.14418930491645	5.1456180298922	5.39575825293704	0.701505293033922	0.0275479180305305	0.158360346813944
Merged-chr2-122452698-4	chr2	122452620	122452820	+	960.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356532, intron 10 of 17)	ID_B1|SINE|B4	11900.0	NM_001356532	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	4.57851653347088	5.27203026434471	5.13197983853781	5.31271429558151	4.82120481965834	4.66648342708789	4.94870985503325	4.5763734215411	-0.702087575463076	0.0530169253040047	0.240117824269137
Merged-chr1-171845137-4	chr1	171845013	171845213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	5416.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	4.95897661483749	5.09853169694671	5.16766485868626	4.95246716064205	5.21408330576375	5.43240296046191	5.26312321560437	5.25647473044913	0.467148417417324	0.113106199523514	0.371757765787042
Merged-chr4-134097321-5	chr4	134097163	134097363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2190.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	6.21936738092087	6.53546788512106	6.1595735975705	5.98368209573447	6.4311068891482	6.4914946440391	6.28350777163162	6.41691888976971	0.266968065764131	0.263691758281508	0.575798866850306
Merged-chr11-68852643-1	chr11	68852543	68852743	+	1000.0	f0_balb.idr	intron (NM_023668, intron 1 of 8)	CpG	488.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	5.28614076508959	5.3795788114961	5.15271082403639	4.98199120996094	5.73496596537418	5.52487000537005	5.68669832082854	5.61767178181603	0.802452620555989	0.00444156577861309	0.0434983778970695
Merged-chr14-33276505-3	chr14	33276426	33276626	+	862.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 3 of 10)	B4A|SINE|B4	59703.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	3.41899137356413	3.60666067046898	3.65171147413814	4.09679050818294	3.30812135716195	3.82288162275251	3.58334495679939	3.75174527707322	-0.32431683609604	0.550454994915093	0.798632172919405
Merged-chr14-54227822-7	chr14	54227737	54227937	+	878.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26092.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	3.58193097190863	3.445694308262	3.29831687434945	3.50218938016326	3.37170017575797	3.64647847516942	3.4067842277724	3.63027376479465	0.168659630528006	0.737846985099576	0.896555867875472
Merged-chr6-17646282-4	chr6	17646246	17646446	+	615.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 1 of 9)	intron (NM_007604, intron 1 of 9)	9336.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	3.54638030657569	3.21070092788426	3.54687606546915	3.37924767404936	3.58854103908575	3.71678246120006	3.58416104358649	3.49045067784338	0.575075463195604	0.247000475398545	0.558168726560377
Merged-chr9-108306842-4	chr9	108306767	108306967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313961)	promoter-TSS (NM_001313961)	70.0	NM_001313962	11848.0	Mm.757	NM_016802	ENSMUSG00000007815	Rhoa	Arha|Arha1|Arha2	ras homolog family member A	protein-coding	6.55301952335407	6.55025363079082	6.4861022934697	6.59009803705632	6.68369401114525	6.4967176626737	7.26737015536785	6.67543507299773	0.383362903812986	0.108533052310639	0.363610756397392
Merged-chr10-127526876-4	chr10	127526788	127526988	+	937.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183297, exon 2 of 2)	exon (NM_183297, exon 2 of 2)	-4444.0	NM_028230	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	4.76372567514222	5.30311197804221	4.98542174949297	4.92145072829648	4.93856617133813	4.68039809895161	5.14767731659518	4.76139737640461	-0.216747556018855	0.528848686071819	0.785320670621494
Merged-chr19-12796772-4	chr19	12796667	12796867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024093)	promoter-TSS (NR_024093)	574.0	NM_001361971	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	6.98141306812149	7.32841855685148	6.93060540336198	6.97525488078343	6.7879831644765	7.31448778442405	6.95996600130816	6.91235925665421	-0.0868955675296938	0.688439779010806	0.872783952804527
Merged-chr19-56721998-4	chr19	56721912	56722112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007419)	promoter-TSS (NM_007419)	-360.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	7.2183069498193	7.50505318901112	7.21955469080851	7.23356389892646	7.41058134638148	7.58458415251652	7.59997617033825	7.09646739971702	0.184161542852846	0.355941973225279	0.662610987347058
Merged-chr1-156571674-4	chr1	156571565	156571765	+	833.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	12878.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	3.58892612407167	3.84979828756645	4.15098910879638	3.94337707193068	4.32487086407885	4.32353205275777	4.08628692557317	4.57177267808542	1.10920597079265	0.0116778317358698	0.0881272672951102
Merged-chr10-59589583-4	chr10	59589470	59589670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033259, intron 1 of 7)	intron (NM_001033259, intron 1 of 7)	27122.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	5.45913469453805	5.6390995313931	5.65865553499441	5.72884012312259	5.97553141312065	5.78095553627582	5.95073507566252	5.73105794545722	0.384175273984078	0.134373115248879	0.408014289628717
Merged-chr1-80822366-4	chr1	80822289	80822489	+	967.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63836.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	4.3512851738166	4.89827898993469	4.62877847924169	5.01824687868482	5.09445681671397	4.76229209210031	4.79852661536949	4.5399512985348	0.117536146837322	0.759872654490241	0.905842932790046
Merged-chr18-57352531-4	chr18	57352456	57352656	+	951.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-2177.0	NM_028447	73137.0	Mm.29889	NM_028447	ENSMUSG00000024594	Prrc1	1190002C06Rik|2310058D16Rik|3110038B19Rik|9430085A19Rik	proline-rich coiled-coil 1	protein-coding	5.36492106861504	5.01263734408207	5.28341896543416	5.42044378648486	5.22589176742897	4.81248699010124	4.69949960012982	4.9581966054754	-0.627100462366851	0.0605797227822273	0.260068985812033
Merged-chr15-95793087-4	chr15	95792986	95793186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	2243.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	5.78035176100209	5.69582826225704	5.85088834156899	5.35679391201736	5.81405322337272	5.80543475819462	5.7519708797375	5.82398804922791	0.227460034444484	0.398732024676993	0.696854797387186
Merged-chr15-6360349-3	chr15	6360256	6360456	+	927.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	-26392.0	NM_023118	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	3.73254164362206	3.95283028483723	3.56618375218551	3.7932754893858	3.73240790933646	3.79691088134688	3.86467703334186	3.73097773974261	0.0214112391156475	0.962708703749777	0.986699874256659
Merged-chr13-55040245-4	chr13	55040147	55040347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359758, intron 11 of 14)	intron (NM_001359758, intron 11 of 14)	-18862.0	NM_001033245	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	6.19049685954797	6.22049487314715	6.66323040117319	6.36171078649307	6.29661515082066	6.32722769568695	6.11861997860643	6.60109348052259	-0.0364071651451069	0.88023431160981	0.955123602336575
Merged-chr19-4058428-2	chr19	4058328	4058528	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144869, intron 4 of 6)	intron (NM_144869, intron 4 of 6)	1019.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	3.17944027450071	2.90320262235237	2.85944746473056	2.74329211201672	3.44786084742946	3.23464836768437	3.04969257652743	3.28696872476586	1.39754072488233	0.0181586106132237	0.119976955800487
Merged-chr5-53948765-1	chr5	53948665	53948865	+	709.0	f0_balb.idr	Intergenic	Intergenic	-49758.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	3.30033546965869	3.22300714329872	3.353161320787	3.36716876915072	2.8723878873727	3.24041473430631	3.0567359240501	3.00000797784148	-1.10363921937999	0.0573719335155039	0.251241347096103
Merged-chr6-72379643-4	chr6	72379590	72379790	+	935.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016872, intron 1 of 2)	intron (NM_016872, intron 1 of 2)	778.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	3.47180313631997	3.70302890634039	3.58330388593174	3.39761890045083	3.81436529236745	3.75327506482622	3.27556387524736	3.47043956998933	0.202899610066135	0.695494657872658	0.876684392093184
Merged-chr12-21389638-3	chr12	21389532	21389732	+	956.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011739)	TTS (NM_011739)	-16000.0	NM_009615	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	3.85894900446712	3.52334742973937	3.49826130514435	3.39799246776124	4.90935263077216	4.5745769016993	5.06489186153439	5.32178051818239	3.55017805880735	6.46314813095467e-15	1.02917320092443e-12
Merged-chr16-25050824-2	chr16	25050724	25050924	+	793.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8815.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	2.91950690162543	2.64892262883448	2.6881067581131	2.31118531761946	2.64676655789445	2.86022862880818	2.54658970144406	2.32593261301984	-0.254700135745321	0.738019155299442	0.896580162228794
Merged-chr19-3379205-1	chr19	3379105	3379305	+	1000.0	f0_balb.idr	intron (NM_013495, intron 15 of 18)	intron (NM_013495, intron 15 of 18)	-9652.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	4.67529168555381	4.21635840175566	4.39588563675976	4.65468847629188	4.48330554238999	4.47937734714506	4.41994510235792	4.70828067469412	0.0403109251302164	0.915324204252043	0.968584873774714
Merged-chr3-27859487-4	chr3	27859361	27859561	+	941.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36907.0	NM_001164437	208613.0	Mm.59189	NM_001164437	ENSMUSG00000043164	Tmem212	E030011K20Rik|Gm564	transmembrane protein 212	protein-coding	4.3588450775862	4.54246855136865	4.72049149076545	4.62060465334597	4.33709711481053	4.66390834837145	4.51181396850547	4.40229526277692	-0.212014298541648	0.56450161021792	0.806796423519025
Merged-chr1-87640511-4	chr1	87640404	87640604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	20192.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	7.46191127381323	7.43093888709297	7.60426384155868	7.53588599835551	7.32021519334224	6.90117442529207	7.44472432267471	7.41047749986994	-0.294181340209905	0.129801262065493	0.401003647246517
Merged-chr10-88372673-4	chr10	88372580	88372780	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6732.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	5.26756976709549	6.13595133365102	5.56247769713457	4.59439035075588	5.56048156636539	5.76327524779474	5.3061297830491	5.4489591311264	0.0339091590724709	0.932466947759899	0.975664181402534
Merged-chr16-33658950-3	chr16	33658832	33659032	+	851.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 11 of 11)	(CA)n|Simple_repeat|Simple_repeat	-25534.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	2.93536709199113	3.07735998870712	3.10559882601597	2.87086449296854	2.81144462769953	2.77156078610371	2.79993586596559	3.05002212594971	-0.601110786208631	0.330694983649807	0.642024336284799
Merged-chr6-128134733-4	chr6	128134630	128134830	+	884.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	8848.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	4.61626372937206	4.41469518588203	4.61701762403397	4.4334775791442	4.23052280656527	4.41977916483993	4.27379745014924	4.2428838595079	-0.53917953735847	0.152654609977797	0.4369757444304
Merged-chr14-66240547-3	chr14	66240446	66240646	+	806.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-26722.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	3.23090327408057	3.01330290389831	3.1743272741141	3.18688099112397	3.0470086080796	3.02579935332719	3.46713133918219	3.11313786018375	0.078269627051591	0.891052712578698	0.959254414522706
Merged-chr9-75195842-4	chr9	75195734	75195934	+	900.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010864, intron 31 of 40)	intron (NM_010864, intron 31 of 40)	-36180.0	NM_001081322	208943.0	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	4.47775447795461	4.32745130175475	4.67263553923053	4.61677758385244	4.52028390551733	4.8058079810194	4.41583051848595	4.143314694148	-0.0944469063546427	0.808555893285992	0.926119482510179
Merged-chr12-117469554-4	chr12	117469383	117469583	+	846.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-46996.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	3.73328850100903	3.81015245881644	3.56281051649443	3.51038452284087	4.04181492728463	4.18683848176787	3.66475788888241	3.67720250487668	0.761788423100024	0.11038848984274	0.366908350152529
Merged-chr3-34033986-4	chr3	34033881	34034081	+	887.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113189, intron 1 of 16)	intron (NM_001113189, intron 1 of 16)	13902.0	NM_001113189	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	4.33772766619618	3.99702080376424	3.72323394981608	4.2948063214925	4.29561841467527	4.28955001148642	4.39663148758629	4.25136576210808	0.459493282415356	0.284825435453544	0.596601873969183
Merged-chr13-47362408-3	chr13	47362303	47362503	+	756.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	168400.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	3.17378762865634	3.12346969276182	3.49277208413335	3.42698577049943	3.28982651299356	3.15618815917406	3.10219274410649	3.1109702930039	-0.550715073178272	0.32897925109764	0.640230050960462
Merged-chr8-72584468-3	chr8	72584374	72584574	+	703.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357280, intron 4 of 4)	intron (NM_001357280, intron 4 of 4)	12651.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	2.61925764527327	2.55398717086823	2.53665903571295	2.39440032800834	3.14569911414008	3.26941696688348	3.24063379850184	3.39747711026967	3.72316585072071	7.57905065130274e-08	3.32595096368112e-06
Merged-chr16-43955617-2	chr16	43955541	43955741	+	709.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_027801, intron 12 of 15)	intron (NM_027801, intron 12 of 15)	23409.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	3.51312575001284	3.44289119427512	3.67585989362314	3.71028797285011	3.57740607606134	3.44182143801982	3.66066344150228	3.90474570037451	0.185332178719918	0.707679888473465	0.882529695648857
Merged-chr8-122880128-4	chr8	122880006	122880206	+	956.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31732.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	3.98315415654936	4.31423477064059	4.36072008240761	3.98964943879965	4.35679124716384	4.05140579322667	4.45623844891393	4.35790315647035	0.378017718577272	0.357099101363244	0.663325163389815
Merged-chr11-51918058-4	chr11	51918015	51918215	+	921.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49516.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	4.26139170845659	4.44940523562056	4.26202917624021	4.3902150376473	4.25111621322869	4.38899031415819	4.41496057315042	4.4324653698603	0.0449859879078915	0.904681709239988	0.964636946775419
Merged-chr13-55321726-6	chr13	55321438	55321638	+	923.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025596)	promoter-TSS (NM_025596)	442.0	NM_009000	19336.0	Mm.220923	NM_009000	ENSMUSG00000034789	Rab24	6530406O07Rik	RAB24, member RAS oncogene family	protein-coding	3.39315508440296	3.21997952413848	3.60126693268331	3.11181120694145	3.26163516253439	3.56531909713364	3.3802359037197	3.44679573616644	0.284043384669362	0.598814102126874	0.826090956184371
Merged-chr3-38106196-4	chr3	38106091	38106291	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101928.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	4.7478728520242	4.84607230377568	5.19810724163027	5.40994709691278	4.75769206296724	4.9660054389406	4.91698227687295	5.0400291510129	-0.349588078909657	0.318988892451597	0.630835151818189
Merged-chr8-111325338-4	chr8	111325259	111325459	+	819.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310613, intron 4 of 10)	L1M5|LINE|L1	12846.0	NM_001310613	74568.0	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	4.80461174270529	4.28715278556303	4.59519765763247	4.41737909788885	4.49730275970203	4.37456066248608	4.57356681455407	4.38577024332778	-0.151046154988223	0.690040762357954	0.873708755939177
Merged-chr4-119119017-4	chr4	119118926	119119126	+	970.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 1 of 9)	intron (NM_011400, intron 1 of 9)	10281.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	5.01928920963495	4.61868468478913	5.08982763407372	5.52729547170483	5.18929538612593	4.68904472041929	5.38940600685265	5.62868646667869	0.273372897486427	0.486944421375295	0.760460233910227
Merged-chr15-51911932-3	chr15	51911845	51912045	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34504.0	NM_030132	78581.0	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23 small subunit processome component	protein-coding	3.5972601759229	3.5974729323928	3.65008970589128	3.2947006889396	3.58118135886113	3.60259960574056	3.82260202345811	3.48448472973094	0.317348599052027	0.52353340629689	0.782507755382099
Merged-chr6-86400234-4	chr6	86400134	86400334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER67A|LTR|ERV1	-3084.0	NM_025823	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	7.10991549323973	7.38130232239551	7.39189977240013	7.06958380167018	7.17001428523737	6.86352291792331	7.00365307218529	6.72830690064737	-0.383938467398732	0.0664645752716606	0.274779694677443
Merged-chr12-102387893-2	chr12	102387793	102387993	+	899.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 9 of 9)	intron (NM_177620, intron 9 of 9)	51920.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	2.57850543507898	2.31752049778357	2.57880943321763	2.56951873944265	2.45797627544506	2.68414345074621	2.69194649254302	2.64083056904111	0.525161976644835	0.44457491419537	0.730986320570854
Merged-chr10-24643031-4	chr10	24642921	24643121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308329, intron 24 of 24)	intron (NM_001308329, intron 24 of 24)	47579.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	7.44485149065731	7.17325996531587	7.70533708044966	7.76870206323437	7.23417400511216	6.96863282187517	7.16430119712355	6.84580147414227	-0.649419084057069	0.00277079572801735	0.0300232104010575
Merged-chr5-114855404-4	chr5	114855302	114855502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026263, intron 1 of 11)	intron (NM_026263, intron 1 of 11)	1688.0	NM_026263	67593.0	Mm.251409	NM_026263	ENSMUSG00000029564	4930519G04Rik	1700014B12Rik	RIKEN cDNA 4930519G04 gene	protein-coding	6.41806617865739	6.44810034565708	6.40081906642079	6.53327819225467	6.52991167688673	6.85774827975975	6.85140510724586	6.93076648148121	0.481214263517786	0.024610789328786	0.14683749988547
Merged-chr8-95204154-4	chr8	95204061	95204261	+	719.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61621.0	NM_001145831	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	3.43148426167695	3.57367440885412	3.49358733959158	3.79390420760551	3.79588701181644	4.02514926530187	3.59501104598256	3.66105879564406	0.550363225301026	0.26877398677718	0.580394011861325
Merged-chr1-135112839-3	chr1	135112715	135112915	+	894.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153383, intron 25 of 36)	intron (NR_153383, intron 25 of 36)	-7539.0	NM_001033409	329252.0	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	3.67262278641346	4.03470791611619	3.83369517195661	3.93766176032553	4.10052432115956	3.67000490585958	3.76727614711204	3.72685285625329	-0.118562571123308	0.800691332157036	0.923103471519366
Merged-chr1-40410053-3	chr1	40409950	40410150	+	968.4722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-int|LTR|ERVL	-19520.0	NM_001294171	17082.0	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	4.60852051454055	4.2260725477481	4.77890658475811	4.85675746431557	3.96629663818259	4.08803016516098	4.39285647348516	4.17912052626068	-1.15915887183148	0.00568899267925408	0.0522836423391383
Merged-chr15-76871373-3	chr15	76871251	76871451	+	971.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007568)	promoter-TSS (NM_001007568)	84.0	NM_001007568	71591.0	Mm.38195	NM_001007568	ENSMUSG00000022526	Zfp251	9130001M19Rik|AV339307	zinc finger protein 251	protein-coding	3.80350159138392	3.94807419045473	3.54087006294789	3.69769079820249	3.2275954727052	3.71628454651119	3.46866910973186	3.84839287196246	-0.544673798788215	0.299273148008877	0.611545471309502
Merged-chr3-103100922-2	chr3	103100822	103101022	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26634.0	NM_177857	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	2.84259688772665	3.0943796281009	2.782182466149	2.81180037570858	2.46082220781685	2.89058011922497	2.57375090808935	2.42737668670502	-1.49414044155071	0.0414177901743292	0.206103534381581
Merged-chr10-111774001-3	chr10	111773899	111774099	+	928.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	100377.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	4.88065055251957	5.20117844248243	5.44148514524686	4.84083654899845	4.49519790478655	4.86880235098903	4.44923585689364	4.25812650771004	-1.19466417089187	0.00196686709970551	0.0231404352545353
Merged-chr7-133709097-4	chr7	133709004	133709204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025392)	promoter-TSS (NM_025392)	191.0	NM_009479	22276.0	Mm.3160	NM_009479	ENSMUSG00000030979	Uros	AI415298|UROIIIS|Uros3	uroporphyrinogen III synthase	protein-coding	6.28110554859927	6.32189169654854	6.52904712033746	6.08922757506965	6.5202967605688	6.65583433125155	6.28819800446693	6.80917688372265	0.411320907700116	0.0820248152743821	0.310956463934313
Merged-chr12-38594308-4	chr12	38594216	38594416	+	957.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045943, intron 1 of 8)	intron (NR_045943, intron 1 of 8)	20205.0	NR_045943	73867.0	Mm.78933	NR_045943	ENSMUSG00000112967	4930428E07Rik	-	RIKEN cDNA 4930428E07 gene	ncRNA	4.93986024007082	4.68792149952914	4.94068545240677	5.43020194525567	4.89501436129625	4.5169557184597	4.77076531392842	5.15985194609148	-0.372097364435347	0.326315804346891	0.637836952838319
Merged-chr18-6109039-2	chr18	6108939	6109139	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039692, intron 3 of 18)	intron (NM_001039692, intron 3 of 18)	27059.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	3.27562019717628	3.10725850880292	2.88727789080381	3.07382201677268	3.36151878837488	3.38974849937669	3.14734397842643	3.48069382534012	0.963465869549783	0.0835341049096043	0.314230739528629
Merged-chr2-163642938-4	chr2	163642823	163643023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012032, intron 1 of 9)	RLTR4_Mm|LTR|ERV1	-1927.0	NR_028113	68386.0	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	5.88527124607053	5.85702604236782	5.76866414759944	6.11330433088032	5.8239562141834	5.6728952055598	5.73947033561288	5.71432262848635	-0.30062664813015	0.238592669961451	0.548972916561797
Merged-chr9-21146923-4	chr9	21146833	21147033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016742, intron 1 of 7)	intron (NM_016742, intron 1 of 7)	2973.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	6.78082408977611	6.80409805336315	6.0921681389425	6.58719029876669	6.48655719719866	6.59105301727435	6.38168349258448	6.2590456335649	-0.237232931188686	0.334256224586223	0.644805241742718
Merged-chr13-16912443-4	chr13	16912336	16912536	+	970.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138654, intron 13 of 13)	intron (NM_138654, intron 13 of 13)	782329.0	NM_138654	192136.0	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	5.326832938094	4.89616201681912	5.50217055832269	5.49137188746144	5.87035814463604	5.071920280254	5.84496267833525	5.52513074285256	0.50653385393248	0.131153451325677	0.403104428771734
Merged-chr11-4873932-4	chr11	4873814	4874014	+	949.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008698)	promoter-TSS (NM_008698)	-37.0	NM_008698	18082.0	Mm.293716	NM_008698	ENSMUSG00000034285	Nipsnap1	-	nipsnap homolog 1	protein-coding	5.02319807874393	5.15186989627832	4.61112854065139	4.96405206735901	4.8089914018625	4.74505947987847	4.90032495966063	4.88557283635804	-0.242617679240959	0.468269239581026	0.747581837033483
Merged-chr13-38193040-3	chr13	38192942	38193142	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023842, exon 23 of 24)	exon (NM_023842, exon 23 of 24)	-11897.0	NM_026382	67797.0	Mm.250783	NM_026382	ENSMUSG00000021431	Snrnp48	1110050F08Rik|6530403A03Rik|C6orf151	small nuclear ribonucleoprotein 48 (U11/U12)	protein-coding	5.6997765417602	5.67656174573059	5.67980799220892	6.41840603981343	3.56835992345792	4.20688063304172	3.90357704313766	3.84157931344462	-5.40597608488474	2.99559661205568e-18	7.86802845939155e-16
Merged-chr4-131918803-4	chr4	131918641	131918841	+	866.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102394, intron 1 of 2)	intron (NR_102394, intron 1 of 2)	1288.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	3.6460104983607	3.61742326294543	4.20205823036597	4.31728073059903	3.66889293767959	3.64293219282152	3.84327518812037	3.52371270780948	-0.927260815815971	0.0739016674544181	0.292903100826217
Merged-chr1-55088194-4	chr1	55088094	55088294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008303)	promoter-TSS (NM_008303)	46.0	NM_008303	15528.0	Mm.215667	NM_008303	ENSMUSG00000073676	Hspe1	10kDa|Hsp10|mt-cpn10	heat shock protein 1 (chaperonin 10)	protein-coding	8.66584257398341	8.99487253008179	8.64907593413886	8.68724774515742	8.96847586932816	9.07861827631826	8.7916231926476	8.74436147986528	0.181307448125668	0.27225513422957	0.583764802661998
Merged-chr6-7845785-4	chr6	7845681	7845881	+	928.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_052993, intron 1 of 3)	intron (NM_052993, intron 1 of 3)	557.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	4.75970890305778	4.270327479578	4.45480363601034	4.59542621664143	4.68535810387913	4.58509046710675	4.391337025315	4.49443718067809	0.0344141210275654	0.926425763015466	0.97298421769256
Merged-chr7-135758968-4	chr7	135758851	135759051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42572.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	7.0237764414719	6.89377326730497	6.66049002231313	6.99074083478315	6.76010375378059	6.41662710439007	6.77354804874506	6.84439075363812	-0.271150362775607	0.202967220400454	0.50554655075354
Merged-chr9-58582182-4	chr9	58582097	58582297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009145)	promoter-TSS (NM_009145)	-43.0	NM_001293673	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	8.31669257538229	8.65005138957056	8.30692927055887	7.98793791328178	8.40626472349755	8.65661493257092	8.22263849647712	8.04886914317746	0.0256751440271693	0.901632843597248	0.963484657055261
Merged-chr10-25360711-4	chr10	25360566	25360766	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	868.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	4.67640835420307	4.93122341080767	4.58863101972209	4.92096067749576	5.25502369282152	4.93605356749826	4.98990342569846	5.13603699177152	0.570215273905938	0.084518394656377	0.316357353360189
Merged-chr4-141976301-3	chr4	141976206	141976406	+	848.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 5 of 31)	intron (NM_177868, intron 5 of 31)	-6686.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	3.17963466736465	3.41904850333131	3.4402323441219	3.11857850131278	3.8146113049568	3.49648268676078	3.73740071416174	3.92513569162897	1.54714764673834	0.00231798588126465	0.0262016701671488
Merged-chr3-18319633-4	chr3	18319533	18319733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76295.0	NM_007825	13123.0	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding	7.02811048514176	6.88694051503208	7.41882937258104	7.27825719594557	7.57396891208329	7.54703153027153	7.43793434630766	7.45134927115913	0.446104517058833	0.0233991046140574	0.141968607629952
Merged-chr1-39650307-4	chr1	39650212	39650412	+	814.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170597, intron 1 of 3)	intron (NM_170597, intron 1 of 3)	870.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	3.92266004781488	4.07428204789641	3.71237886177027	3.87263453690863	3.9882894547722	3.64555437434239	3.85767297101296	4.14296299178152	0.0644128782724112	0.887318461338058	0.957758715873797
Merged-chr11-97041518-4	chr11	97041432	97041632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357808)	promoter-TSS (NM_001357808)	-28.0	NM_001357807	107732.0	Mm.208946	NM_026154	ENSMUSG00000001445	Mrpl10	0610040E02Rik|C78440|MRP-L8|Rpml8	mitochondrial ribosomal protein L10	protein-coding	6.4348714304967	6.71618200823373	6.1911350322176	6.09513154386895	6.77080158346713	6.59478801573303	5.98241088190575	6.46516004529154	0.169567154254564	0.535665691331008	0.789809240803911
Merged-chr10-127675332-4	chr10	127675210	127675410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1755.0	NM_173732	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	4.7276192623635	4.94088793095275	4.72837568882215	4.61885033019309	5.24035979404112	5.35101930742773	4.89789158018558	5.08598829417913	0.797969335724505	0.0139750905874067	0.0998928472505544
Merged-chr16-8769320-4	chr16	8769227	8769427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30985.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	5.90258606275717	5.97288053623491	5.96930246870835	5.82161859932269	5.71249676495484	5.69073721094643	6.11637558023452	5.73156212000704	-0.143714248478603	0.574528307023311	0.81246206040379
Merged-chr8-46896842-4	chr8	46896740	46896940	+	986.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-90047.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	4.72474529914403	4.54630621362766	4.61560879546371	4.42893021928807	4.26534612105701	4.1756341998648	4.63114643446317	4.82324515340547	-0.174045070627667	0.658119003400521	0.857677183558236
Merged-chr2-18821815-4	chr2	18821686	18821886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19968.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	6.35473294233641	6.50759356265616	6.59192479871343	6.6394942437612	6.53449816311822	6.22113142930945	6.58850547866794	6.44073759592529	-0.112005466370543	0.610266729865154	0.831595076242652
Merged-chr12-35996039-2	chr12	35995939	35996139	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011783, intron 3 of 7)	intron (NM_011783, intron 3 of 7)	3114.0	NM_011783	23795.0	Mm.7244	NM_011783	ENSMUSG00000020581	Agr2	Agr2h|Gob-4|HAG-2|XAG-2|mAG-2	anterior gradient 2	protein-coding	3.91778816023836	3.54083739659201	3.39557446719573	3.35254299103287	3.5530542870489	3.51192775545315	3.90010732517448	3.82711627871411	0.449899903813162	0.381952267083546	0.684181047849974
Merged-chr10-127050292-4	chr10	127050174	127050374	+	930.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010009, exon 5 of 9)	exon (NM_010009, exon 5 of 9)	2028.0	NM_010009	13115.0	Mm.6216	NM_010009	ENSMUSG00000006724	Cyp27b1	Cp2b|Cyp1|Cyp27b|Cyp40|P450c1|Pddr|Vdd1|Vddr|VddrI|Vdr	cytochrome P450, family 27, subfamily b, polypeptide 1	protein-coding	4.69496700851903	5.04707724901971	4.65457002210749	4.47510012004909	5.17374973554149	4.9853353124872	4.50266057266272	4.94850894936547	0.417566717108759	0.260899762365206	0.572842788797001
Merged-chr3-55101338-4	chr3	55101224	55101424	+	982.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D1|LTR|ERVK	-10784.0	NM_001144988	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	4.87252308521584	5.18683994360982	4.91074167531331	4.69393642133278	4.84060582788295	5.31767159473966	4.85014224235206	5.31370798625271	0.338506442273268	0.327870354515099	0.639190489551923
Merged-chr17-71137210-4	chr17	71137148	71137348	+	954.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46284.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	4.68510916386959	5.00212192320552	4.87795352767823	5.07266119815369	4.78085632348408	4.54206323464761	4.98860774303725	4.97728965008699	-0.192945394318812	0.573511323041687	0.811888602285473
Merged-chr2-167753456-2	chr2	167753356	167753556	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62279.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	3.87797726905533	3.75801401744754	3.83147854936954	3.35239113821964	3.39981263619832	3.95387128165309	3.8145248835133	3.56426809737794	-0.0495915895008579	0.923949398294161	0.971874776059645
Merged-chr13-111824347-4	chr13	111824227	111824427	+	850.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-15334.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	4.67550244366385	4.3398281495314	4.13071571261639	4.43518968222269	4.0249674024746	4.04357703463486	3.90490197520097	4.22198199358589	-0.901663932518574	0.031650506871907	0.173484354066276
Merged-chr12-112594675-4	chr12	112594587	112594787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 1 of 22)	intron (NM_198411, intron 1 of 22)	5903.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	6.22896676061365	6.57794646159876	6.26901910633161	6.47223857196633	6.15966691531528	6.23879552469668	6.39787573376469	6.39201142005444	-0.161987690021418	0.476879870678157	0.753208576524599
Merged-chr3-51358835-10	chr3	51358696	51358896	+	892.056641	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-18152.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	3.7422628426154	3.91604838554482	3.88784139929764	3.57492638819386	3.51592615012691	3.50859945838164	3.56587089962587	3.97344564233499	-0.384837347428065	0.437783420949865	0.726003622104912
Merged-chr1-75478685-4	chr1	75478579	75478779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177056)	promoter-TSS (NM_177056)	792.0	NM_001001566	74241.0	Mm.260577	NM_001001565	ENSMUSG00000032997	Chpf	1700028N03Rik|AI414328|D1Bwg1363e	chondroitin polymerizing factor	protein-coding	4.63802816422223	4.71220187905442	4.71875487709236	4.86993672434053	4.91081886291128	4.54489507094739	5.0018782501164	4.82714418103557	0.184625299608322	0.589372259903221	0.820464677958613
Merged-chr16-43381464-4	chr16	43381360	43381560	+	865.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	38736.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	4.50564406830316	3.90856482255248	4.74397866579899	4.57094467321241	4.13313026389106	4.07828041837501	3.93791497707661	4.34418508085175	-0.817379548772694	0.0675110330901219	0.277286083342284
Merged-chr5-134106055-4	chr5	134105967	134106167	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030719, intron 1 of 8)	ORR1E|LTR|ERVL-MaLR	6319.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	4.99176851379452	5.1683513699087	5.19371634942955	5.11456233593509	5.3449585190846	5.05575899443498	5.22831784832718	5.15874381242975	0.169905016126671	0.567838890732069	0.808331754798167
Merged-chr9-60743385-4	chr9	60743299	60743499	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	30278.0	NM_026235	67557.0	Mm.44546	NM_026235	ENSMUSG00000034839	Larp6	5430431G03Rik|AI552438|Achn	La ribonucleoprotein domain family, member 6	protein-coding	5.51763919543934	5.5519367236901	5.64672426907926	5.73308939193509	5.42719161234628	5.52106244777036	5.28795502885049	5.14162601081159	-0.469085929220827	0.0934440402166819	0.334349554090817
Merged-chr2-121143481-1	chr2	121143381	121143581	+	627.0	f0_c57.idr	intron (NM_001290812, intron 3 of 8)	intron (NM_001290812, intron 3 of 8)	1388.0	NM_029475	75894.0	Mm.384805	NM_029475	ENSMUSG00000027259	Adal	4930578F03Rik	adenosine deaminase-like	protein-coding	2.7704216438399	2.87373607740811	2.61651483049136	2.68629355898282	3.24666219424333	3.08588803696206	3.38237543471012	3.14844116397173	2.07067581890202	0.00070472036436262	0.0101772722454106
Merged-chr14-86847549-1	chr14	86847449	86847649	+	796.75	f0_balb.idr	intron (NM_019670, intron 22 of 27)	MLT1B|LTR|ERVL-MaLR	293675.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	3.24516092379719	3.49172904848458	3.5403399975321	3.58921707540062	2.61682660610843	2.73516164553617	2.78154986049579	2.7877834493146	-4.35554464731767	4.98235880475052e-06	0.000147519127051436
Merged-chr6-137756522-4	chr6	137756420	137756620	+	752.637512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172733, intron 1 of 8)	B3|SINE|B2	1943.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	4.63540797418383	4.32528155782454	4.42911249796599	4.41280704028509	4.649565694078	4.51379260213542	4.53621350507614	4.99510212887668	0.525067607870298	0.152254235031656	0.436220300550268
Merged-chr1-173491281-3	chr1	173491180	173491380	+	632.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44677.0	NM_001024721	545384.0	Mm.371698	NM_001024721	ENSMUSG00000070501	Ifi214	Pyhin-B|p214	interferon activated gene 214	protein-coding	2.88762655181659	2.95710658102059	3.17847735994508	3.24808204055244	3.47123466470315	3.74115923567577	3.73535918981601	3.41624018696985	1.78430252401597	0.00293022363267789	0.0313828450120944
Merged-chr5-21564150-4	chr5	21564071	21564271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028977, intron 2 of 3)	intron (NM_028977, intron 2 of 3)	20644.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	7.39978554035215	7.50137481655152	7.52202306051902	7.41991897592244	7.34326500919975	7.30685140629579	7.18674130648134	7.28359559000743	-0.236111280002716	0.173229552707042	0.467220322400386
Merged-chr16-30977423-4	chr16	30977337	30977537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	103995.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	5.92807532509473	6.19577535653938	5.6775052178616	5.95509170686602	6.07283205220681	5.9356224298295	6.25235165009685	5.87843763306844	0.139579083333557	0.584653526656614	0.817725463637045
Merged-chr5-110176475-4	chr5	110176400	110176600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008146)	promoter-TSS (NM_008146)	4.0	NR_040431	100504007.0	Mm.441495	NR_040430	ENSMUSG00000086247	Gm15787	-	predicted gene 15787	ncRNA	7.57307841430706	7.44825815117884	7.26491118699044	7.28625067174461	7.84865881952649	7.86150910260319	7.74756775047389	7.56028701526295	0.486748507656085	0.00701988509906403	0.060987233182751
Merged-chr18-24467858-4	chr18	24467762	24467962	+	979.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3009.0	NM_026529	68046.0	Mm.276574	NM_026529	ENSMUSG00000024273	2700062C07Rik	AI195775|C87515	RIKEN cDNA 2700062C07 gene	protein-coding	4.52113340424312	5.107884483648	4.86497158964877	5.22005255581936	5.27884883318918	5.00220958476779	4.91464405189511	4.93499017069368	0.145554649961509	0.682403281247217	0.869778185644929
Merged-chr2-131417433-2	chr2	131417333	131417533	+	701.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64541.0	NM_178607	51902.0	Mm.477523	NM_178607	ENSMUSG00000048911	Rnf24	2810473M14Rik|4930505A13Rik|AI317164|C86507|D2Ertd504e	ring finger protein 24	protein-coding	3.19517065546695	2.80968801331344	3.02216142782225	2.95045088245062	2.92487089208071	3.30890323556865	3.01130175026402	3.0809673614493	0.357217396536372	0.546750866893087	0.796552796008413
Merged-chr1-180924906-2	chr1	180924806	180925006	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10116.0	NM_010094	13590.0	Mm.378911	NM_010094	ENSMUSG00000038793	Lefty1	AI450052|Ebaf|Leftb|Stra3|Tgfb4|lefty|lefty-1	left right determination factor 1	protein-coding	2.88835072336096	2.80417257256018	2.88866661631765	2.7059630446663	3.15224161813864	3.36674893652797	3.23680697359887	3.24903226693157	1.83843553371038	0.00137223462955143	0.0173952428667571
Merged-chr11-114897510-3	chr11	114897398	114897598	+	988.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170758, intron 3 of 6)	RSINE1|SINE|B4	7457.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	4.08941028125167	3.59808113087404	4.3740392883199	4.39908695822896	3.82026645587796	3.84504012321665	4.07187255855075	3.89146934863855	-0.66884635663871	0.166634938186886	0.457960964592688
Merged-chr6-89282783-4	chr6	89282686	89282886	+	766.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131021, intron 1 of 3)	L1M4|LINE|L1	2939.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	4.26165991072257	4.43721882909788	4.43062641053108	4.23475367693931	4.16245375387854	4.02500274823311	4.24350577396808	4.46647256562275	-0.257207196931877	0.518230489595355	0.779393340494163
Merged-chr5-139792639-3	chr5	139792522	139792722	+	856.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010757, intron 1 of 2)	intron (NM_010757, intron 1 of 2)	1086.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	3.48033412555726	3.49425025171534	3.58629537471363	3.34787070614583	3.69792663308003	3.35154849099818	3.29429457940284	3.68084132866442	0.181720257374692	0.724700359347906	0.890415158618739
Merged-chr19-36554796-3	chr19	36554713	36554913	+	937.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172637, exon 1 of 21)	exon (NM_172637, exon 1 of 21)	174.0	NM_172637	226098.0	Mm.61107	NM_172637	ENSMUSG00000041180	Hectd2	4921524L07|A630025O09Rik|AW212605	HECT domain E3 ubiquitin protein ligase 2	protein-coding	3.83143895502429	4.29443102200736	4.21098883358623	3.88031469228484	3.84227632544441	3.8964774416675	4.15026445374338	3.88368129185848	-0.317492667845236	0.479949024841775	0.755620431575299
Merged-chr19-16123297-1	chr19	16123197	16123397	+	723.0	f0_c57.idr	Intergenic	Lx8|LINE|L1	-9534.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	2.76794958456984	2.62135987940034	2.84269008790822	2.27800883172189	3.39610609731029	3.39543964981025	3.20670946129255	3.37438864035951	3.60240865200653	3.27239197064309e-06	0.000101847655478096
Merged-chr1-75400064-4	chr1	75399956	75400156	+	725.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001173477)	promoter-TSS (NM_001173477)	-29.0	NM_001173477	11790.0	Mm.275397	NM_007463	ENSMUSG00000026207	Speg	AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297	SPEG complex locus	protein-coding	3.37417250372756	3.51794285077359	3.70598089678672	3.62659590569853	3.64124585914052	3.55008202721227	3.59025765361779	3.70378363703088	0.182132339785778	0.70577095383942	0.881821802733794
Merged-chr8-71701122-2	chr8	71701023	71701223	+	908.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028189, intron 1 of 2)	intron (NM_028189, intron 1 of 2)	677.0	NM_028189	72297.0	Mm.290837	NM_028189	ENSMUSG00000031803	B3gnt3	2210008L19Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding	3.25412980948544	2.98137869269981	3.0890309780757	2.74943831533184	3.12733796505561	3.00814116434071	3.13411571500061	3.02722240890194	0.234147870055976	0.696537940737829	0.877253770326596
Merged-chr12-79744308-4	chr12	79744233	79744433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	180400.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	5.214943620093	5.46960292521009	5.24799815778107	5.2936494763621	5.27004141352225	5.25577876758944	5.45209141095854	5.47580742749341	0.0936016372977334	0.742276531136509	0.898494026733066
Merged-chr12-111039221-4	chr12	111039147	111039347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198023)	promoter-TSS (NM_198023)	-551.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	8.44135226697523	8.56150035115498	8.28070115979409	8.39715099708528	8.39449750029545	8.34974497215428	8.56443833403063	8.30374025507845	-0.0219509116728373	0.889153774318292	0.958460693333562
Merged-chr6-86526228-4	chr6	86526134	86526334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011865)	promoter-TSS (NM_011865)	-45.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	5.83024877785678	6.05478557103146	6.06015800946308	5.70134061447296	6.15565337506057	6.33510970940076	6.22169095541661	5.99144566822351	0.427019777427214	0.0836565664739704	0.314458742345307
Merged-chr6-134425380-1	chr6	134425280	134425480	+	1000.0	f0_c57.idr	intron (NM_001355686, intron 2 of 5)	intron (NM_001355686, intron 2 of 5)	10952.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	5.7846616018573	5.70309829229994	6.02812083744851	5.65323296640597	5.35386197095282	6.05373771135801	5.87151171914541	5.98309264021481	0.0632674363275224	0.826318016656097	0.93341395042234
Merged-chr11-86671234-4	chr11	86671134	86671334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356531)	promoter-TSS (NM_001356531)	41.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	6.65588925920058	6.51811599015934	6.65706128423787	6.47548726987624	6.74767147667788	6.54672666042716	6.81776047442984	6.68221851670352	0.196993336384934	0.337783517007848	0.647573070380888
Merged-chr9-38804970-2	chr9	38804870	38805070	+	859.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16-int|LTR|ERVK	-10438.0	NM_146781	258777.0	Mm.223208	NM_146781	ENSMUSG00000043911	Olfr922	MOR161-3	olfactory receptor 922	protein-coding	3.3429392580102	3.12016386854631	3.3982787527233	3.00377907341463	3.62061366001971	3.33906455983771	3.27373003195718	3.34155702343762	0.701305095015235	0.201986286040793	0.504533332892253
Merged-chr14-120326616-4	chr14	120326544	120326744	+	748.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	B4|SINE|B4	20192.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	3.67507499138621	3.59336706037833	3.78021494690356	3.89128136370877	3.8782569075169	3.73607808129469	3.94833742319387	3.6182242085461	0.163048856874191	0.726612928152583	0.891163788217188
Merged-chr5-134179982-4	chr5	134179860	134180060	+	931.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3193.0	NM_033572	94254.0	Mm.29508	NM_033572	ENSMUSG00000061979	Rcc1l	5730496C04Rik|AU019812|Wbscr16	reculator of chromosome condensation 1 like	protein-coding	4.26717008137209	4.16732741436984	4.17756020972181	4.05924251224104	4.54976676194429	4.15339414343512	3.95994100986355	4.42819829917823	0.349996234442414	0.399156575255477	0.69723345039411
Merged-chr9-108569873-4	chr9	108569775	108569975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026378)	promoter-TSS (NM_026378)	-17.0	NM_026378	67789.0	Mm.458081	NM_026378	ENSMUSG00000019039	Dalrd3	6330580J24Rik|C77829|mir-425	DALR anticodon binding domain containing 3	protein-coding	7.00252764009825	6.87176661808708	6.69992216625112	6.73138710197356	7.04556726377989	6.95284701022639	7.2801446278543	6.81423604294145	0.292590073936565	0.15800814148815	0.444909272636774
Merged-chr13-59728610-4	chr13	59728509	59728709	+	742.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177711, exon 4 of 4)	exon (NM_177711, exon 4 of 4)	3143.0	NM_177711	238663.0	Mm.444776	NM_177711	ENSMUSG00000043986	Spata31d1d	4932411G14Rik|Fam75d1d	spermatogenesis associated 31 subfamily D, member 1D	protein-coding	4.37028459056756	3.79075410909462	3.94238600763909	4.03926188076661	4.02823639259337	3.90117803823315	3.64668597592796	4.33128536292997	-0.129197158198712	0.785386999283201	0.916479414030825
Merged-chr16-90221867-4	chr16	90221753	90221953	+	872.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011434, intron 1 of 4)	intron (NM_011434, intron 1 of 4)	1111.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	3.61052309180443	3.63998439594503	3.83029601257182	3.98883049825569	3.94817951885784	3.89792107246903	3.91046117942444	3.8774876302008	0.332739428148326	0.467385481128932	0.746975125430008
Merged-chr15-102234063-4	chr15	102233965	102234165	+	881.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011244)	TTS (NM_011244)	-2130.0	NM_013566	16421.0	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	3.9657743734203	3.94280853259599	4.23875103506951	3.87807444510727	4.07291188143399	4.13937198742093	4.13558790124097	3.96404443607896	0.204836218084258	0.625571634146142	0.839997329134293
Merged-chr16-76304869-4	chr16	76304774	76304974	+	837.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358238, intron 3 of 3)	intron (NM_001358238, intron 3 of 3)	68175.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	3.87231501501698	4.19502537081467	4.08381956263671	4.66095630881445	4.08628037463795	3.74288027147188	4.50874366241244	4.03180340412248	-0.318844836441519	0.518729820391799	0.779715966669508
Merged-chr7-25298183-4	chr7	25298056	25298256	+	953.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008776)	promoter-TSS (NM_008776)	-170.0	NM_001357350	18476.0	Mm.597	NM_008776	ENSMUSG00000005447	Pafah1b3	Pafahg|mus[g]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	protein-coding	4.20549434864246	4.38330441847763	4.29315360552269	4.02648576342404	4.29211162471474	4.18765138742698	3.99587051758114	4.15777381696198	-0.138496705038295	0.735568426261444	0.895620853939579
Merged-chr16-16303450-4	chr16	16303371	16303571	+	905.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_038046, exon 1 of 5)	non-coding (NR_038046, exon 1 of 5)	506.0	NM_198246	70120.0	Mm.37486	NM_198246	ENSMUSG00000022792	Yars2	2210023C10Rik|tyrRS	tyrosyl-tRNA synthetase 2 (mitochondrial)	protein-coding	4.2627099486667	3.91820557093202	4.17279405350478	4.13870700195567	4.09818466103917	4.25078918761252	4.32783023137308	4.53427274644465	0.445255379620373	0.273223408955849	0.584789783078794
Merged-chr2-157078614-4	chr2	157078513	157078713	+	818.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164663, exon 1 of 15)	exon (NM_001164663, exon 1 of 15)	652.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	4.33816709136758	4.11462532329814	4.56477493995893	3.81898676369117	4.16162973628476	4.42577607127039	3.94184194761864	4.20604168657068	-0.0805223596859782	0.858506932019057	0.946576014812915
Merged-chr12-55468935-2	chr12	55468835	55469035	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23712.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	3.17567215313783	3.15493719270265	3.33308954847031	2.99749886079326	3.29280852336996	2.8188618198534	2.85458338386652	3.05798442572702	-0.545804913705873	0.383887620580367	0.685555904565125
Merged-chr3-65586462-4	chr3	65586342	65586542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57028.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	5.64190095271879	5.74006665492461	5.69748325504485	6.16435718077128	5.8183957519143	6.02388493340393	6.03492112428242	6.08143618972927	0.213096485774535	0.432945949043795	0.722744482862125
Merged-chr4-46602184-4	chr4	46602082	46602282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164804)	promoter-TSS (NM_001164804)	-253.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	6.45688320227307	6.35615834716787	6.42431493744109	6.31253498901202	6.2871666477862	6.58247011196202	6.28508315857644	6.2751388317224	-0.0352747681564405	0.872547294141482	0.952169704828551
Merged-chr1-135746286-4	chr1	135746168	135746368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360782, intron 3 of 5)	intron (NM_001360782, intron 3 of 5)	17101.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	7.07872469299471	7.17341558014227	7.69043965049465	7.42759301377503	7.72980618223701	7.63882426830098	7.97010792397854	7.81503923492856	0.564385401737343	0.00532357752371946	0.0497974346554473
Merged-chr8-13600315-4	chr8	13600225	13600425	+	973.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 4 of 23)	intron (NM_009025, intron 4 of 23)	-37864.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	5.68805814810813	5.00116503860509	5.64414017090234	5.86295180445844	4.87072901469778	4.79691425396281	5.24776308536502	4.95986725723755	-1.12853697998841	0.00110402053877391	0.0145411092949457
Merged-chr15-96709863-4	chr15	96709761	96709961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10133.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	8.15303008480199	8.34782780541175	8.04622418645147	7.67796127505289	8.2445977094908	8.40888905869027	8.05975278780733	7.93701709828771	0.13165799626636	0.520270364296924	0.780730751415725
Merged-chr4-150625582-4	chr4	150625482	150625682	+	975.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26592.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	4.73761079003788	4.92631824100107	4.57147079500726	4.50875857565827	4.93005504723035	4.87378486257242	5.05434428206798	4.91717457321993	0.533827743689848	0.111705191045884	0.369358771782146
Merged-chr13-64312715-4	chr13	64312661	64312861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025370)	promoter-TSS (NM_025370)	-51.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	8.51636214257128	8.40674161995896	8.13197295499941	8.40354272439315	8.90150336130136	8.56174244296306	8.864668188264	8.64622284738541	0.479146008136146	0.00434949125202659	0.0428027703343012
Merged-chr5-140992461-4	chr5	140992367	140992567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175362, intron 1 of 24)	L1ME3|LINE|L1	8129.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	5.2873240998145	4.71393444416339	5.10532726421384	5.34382323672727	5.29818380686557	4.90696623978471	5.20420931942271	4.99954281198412	-0.0461199164889442	0.891215153078074	0.959288098550451
Merged-chr11-58588231-3	chr11	58588104	58588304	+	818.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7367.0	NM_207153	258261.0	Mm.303171	NM_207153	ENSMUSG00000060765	Olfr325	MOR275-5	olfactory receptor 325	protein-coding	3.58740484759598	3.90719710311508	3.28735939614952	3.35361346740333	2.58303994267119	2.76782280739378	2.81352077845371	2.89678966218284	-4.37680413241573	4.9697633020052e-06	0.000147208814845372
Merged-chr3-136795017-4	chr3	136794885	136795085	+	938.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	124919.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	4.24300364878715	4.22298398306783	4.28762865595943	4.44191089580252	4.38587361096667	4.17458587543188	4.26852850416452	3.99573530921649	-0.217617011037409	0.587820407543205	0.819357070175615
Merged-chr5-64919025-3	chr5	64918911	64919111	+	626.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13688.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	3.74856404208167	3.41560245933517	3.6503127031235	3.29388390512255	3.85145806819335	3.71585405844674	3.41430886677132	3.54129595590018	0.381082181701454	0.45920713476219	0.741816182770594
Merged-chr14-31669998-4	chr14	31669908	31670108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28951.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	6.03989725778842	6.21047772211872	6.31183439023815	6.08906869032427	6.2278690935384	6.17307544819417	5.96647868697797	5.82603200069656	-0.149627963926453	0.537671458165164	0.791199228789559
Merged-chr2-50907291-3	chr2	50907183	50907383	+	801.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2401.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	3.94683180465287	3.79678057778158	4.09086935212997	4.2725067909315	3.76377974259286	3.90655599228326	4.23997144353045	4.0883440803861	-0.116465921688244	0.798110058995806	0.921955533143952
Merged-chr1-144319596-4	chr1	144319520	144319720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70516.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	7.76052900770322	7.62878758936122	7.82157036545481	8.01238272314844	7.30339782352338	7.38023704504638	7.39418683003582	7.50310753129815	-0.564514013404412	0.00176438397292777	0.0212212042597204
Merged-chr7-116620571-4	chr7	116620470	116620670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116201.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	6.83160051504632	6.57279759476788	6.54333849027048	6.55327713364257	6.7112608039629	6.6001335782541	6.35517467202167	6.45439669256907	-0.116914364317859	0.592066441184881	0.821919268747471
Merged-chr8-126692420-3	chr8	126692349	126692549	+	966.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99013.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	4.02186072432095	3.41051594484889	3.93774324664456	3.89169107565288	3.6992292306437	3.58116553231327	3.62839825596465	3.58418551544248	-0.630569477618748	0.205441987465303	0.509020997834614
Merged-chr12-85366605-4	chr12	85366501	85366701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 1 of 4)	intron (NM_026775, intron 1 of 4)	8116.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	7.53251191265728	7.67706784088716	7.69097634894084	7.37324813833054	7.24682252738944	6.84733007052731	7.53979928773102	7.13881316678729	-0.466822325651137	0.0271885271958057	0.157005693434225
Merged-chr2-71275938-4	chr2	71275798	71275998	+	925.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 17 of 17)	intron (NM_172436, intron 17 of 17)	63952.0	NM_010064	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	4.3523519835774	4.47302910085228	4.81612859082775	5.03583149038011	4.40018702710848	4.2799620950503	4.46504612949274	4.2540433726848	-0.811971602577805	0.0437485380478599	0.21293439232596
Merged-chr10-79664162-3	chr10	79664064	79664264	+	875.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013591)	promoter-TSS (NM_013591)	-395.0	NM_013591	17123.0	Mm.391556	NM_013591	ENSMUSG00000020310	Madcam1	AV211525|MAdCAM-1	mucosal vascular addressin cell adhesion molecule 1	protein-coding	4.07786079912093	4.021869747497	3.83913081199266	3.76979858952241	4.09281941029562	3.95968242241259	3.77068507841164	3.88847035206504	0.04410230821941	0.920626348547474	0.970545082248596
Merged-chr1-132384455-4	chr1	132384348	132384548	+	948.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178874, intron 1 of 4)	intron (NM_178874, intron 1 of 4)	5870.0	NM_001311107	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	4.23901362750674	4.3541983625056	4.66235514367206	4.86485695163292	4.31630973343668	4.26250176528262	4.44799245609271	4.69463530039506	-0.297023753013685	0.466278591468789	0.746362414818677
Merged-chr8-70506586-4	chr8	70506503	70506703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151646)	promoter-TSS (NR_151646)	149.0	NM_001357209	66462.0	Mm.28242	NM_025577	ENSMUSG00000058833	Rex1bd	2810428I15Rik	required for excision 1-B domain containing	protein-coding	6.83739710523508	7.14090538952977	7.50167434923195	6.63752119356115	6.43565054748171	6.70872150397469	6.42533842578295	6.74892313712347	-0.67586590617568	0.00844142319737775	0.0697125028154253
Merged-chr15-101276809-2	chr15	101276709	101276909	+	770.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7492.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	3.21845669405989	3.65858533062401	3.21882884307256	2.97055177627194	3.63061795973774	4.23441899293162	3.45970184371214	3.47188146360584	1.42990232183416	0.0146832409856952	0.103274546454624
Merged-chr3-31432031-3	chr3	31431935	31432135	+	715.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-121716.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	2.71753771771732	2.62842778260035	2.88778486402486	2.75199530396578	2.77184932189967	2.47303942103428	2.51506216282134	2.52082876304963	-0.837470380366865	0.231124322233381	0.540647495139858
Merged-chr9-109074153-4	chr9	109074056	109074256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172774)	promoter-TSS (NM_172774)	-32.0	NM_172774	235610.0	Mm.100622	NM_172774	ENSMUSG00000025646	Atrip	6620401K05Rik	ATR interacting protein	protein-coding	6.66974431566358	6.56373518075116	6.1450486610501	6.32960382614964	6.84187202909145	6.63859412064432	6.57636891421926	6.93209129459625	0.463878906711523	0.0419025099343645	0.20741159628777
Merged-chr11-3676610-3	chr11	3676524	3676724	+	912.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198162, intron 8 of 25)	intron (NM_198162, intron 8 of 25)	17924.0	NM_198162	74522.0	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	3.9895245272721	3.95761175423915	3.99011370115159	3.76786975773706	3.8439430226107	3.95590540472113	4.34761247235142	4.16996813492296	0.457321754235182	0.295499432678521	0.607448803142013
Merged-chr16-21925500-4	chr16	21925392	21925592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172821, intron 11 of 12)	intron (NM_172821, intron 11 of 12)	22060.0	NM_025693	66664.0	Mm.46480	NM_025693	ENSMUSG00000022856	Tmem41a	2900010K02Rik|5730578N08Rik	transmembrane protein 41a	protein-coding	5.23798277004627	5.13628690944393	4.88304560117057	5.33705734534901	5.48539452531347	5.34959611638427	5.24351931337079	5.32511804155396	0.333984907168005	0.268645306233542	0.580260491970544
Merged-chr15-59649965-4	chr15	59649898	59650098	+	980.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144549, intron 1 of 2)	intron (NM_144549, intron 1 of 2)	1344.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	4.33744751660349	4.64112659524242	4.59079656270322	4.44093229498495	4.19271500240207	4.36974879957758	4.56916223009646	4.73178204300544	-0.0708934446283235	0.853877605044644	0.944905950148447
Merged-chr12-101976015-8	chr12	101975946	101976146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016856)	promoter-TSS (NM_016856)	72.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	6.59089868752469	6.53997233365842	7.04241560002657	6.4589566441239	6.39645570405755	6.78426955906274	6.42453460844179	6.79267146140689	-0.0892515188293472	0.713342739697479	0.88532630847175
Merged-chr1-174038698-4	chr1	174038618	174038818	+	987.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-3215.0	NM_146717	258712.0	Mm.223146	NM_146717	ENSMUSG00000045381	Olfr433	MOR123-1	olfactory receptor 433	protein-coding	5.78590165590517	5.93556019058525	6.04983066719556	5.46564527180949	5.99172391052013	6.26187935673074	5.68263014340822	5.28353660116738	0.0625943204080469	0.844186808499495	0.94088019607581
Merged-chr10-59235795-1	chr10	59235695	59235895	+	746.0	f0_c57.idr	Intergenic	Intergenic	13873.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	3.8374319078417	4.63646046641031	3.83795547650206	3.39132113678396	4.49349050423063	4.27977201378117	4.30410489948933	4.05219976226492	0.681200556767902	0.198737611458325	0.50038713993605
Merged-chr13-63007651-4	chr13	63007575	63007775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 1 of 15)	L1_Mus3|LINE|L1	42782.0	NM_001289924	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	6.72351274871654	6.62742544456141	6.5277044400784	5.86284734779417	6.67206755860249	6.4913409901374	6.70424878740909	6.632865342088	0.247280721831738	0.348115915945404	0.655950834707556
Merged-chr9-90244580-4	chr9	90244484	90244684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 2 of 12)	intron (NM_194334, intron 2 of 12)	26185.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	6.84386520087866	7.02582261626256	7.48160150907997	6.66428510009903	7.20042841224442	6.87405502232744	7.12993035599764	6.50408245692752	-0.100651209003049	0.701314108173756	0.879658083204691
Merged-chr5-3420627-4	chr5	3420529	3420729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 3 of 7)	intron (NM_009873, intron 3 of 7)	76736.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	5.55873068459949	5.27517592020114	5.25646857815244	4.8800224861652	5.2646128943712	5.3679721778087	5.34843232968306	5.34294083415955	0.155226326763926	0.621497172364373	0.837848202271325
Merged-chr7-83647784-4	chr7	83647679	83647879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 16 of 18)	intron (NM_001360088, intron 16 of 18)	7716.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	5.95031264958503	5.68990854632745	5.81625399348356	5.81486347914855	5.8765748203637	6.08178044385989	5.81009351557123	5.51963510081539	0.0299695685987947	0.908773779673903	0.966100563913989
Merged-chr5-124019450-4	chr5	124019344	124019544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	12816.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	6.54228046017745	6.60398623881331	6.44267270109224	6.61284606802837	6.42570009103059	6.30584073731485	6.5100356405911	6.78579019460182	-0.0579642980946717	0.792061777677692	0.919484287594563
Merged-chr8-70538180-4	chr8	70538079	70538279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1496.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	7.76543403303506	8.00976623769201	7.71013398407672	7.52711892351595	7.86126244352094	8.05018428122254	7.89139144059596	7.67982813218269	0.152500581916129	0.416145875178389	0.710072021761014
Merged-chr12-111449479-4	chr12	111449393	111449593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009396, intron 7 of 11)	intron (NM_009396, intron 7 of 11)	6832.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	6.15804189589101	6.19577831355586	5.92035697475411	6.4121379537887	6.12563580387696	6.07251276095748	5.93695479011768	6.33838855311318	-0.11359653705819	0.648854192639955	0.852448228611073
Merged-chr3-84703538-1	chr3	84703438	84703638	+	573.0	f0_balb.idr	3' UTR (NM_177260, exon 7 of 7)	3' UTR (NM_177260, exon 7 of 7)	37346.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	2.93432888434274	2.94014911808872	3.0507209854776	3.30289911414242	2.69571056901746	2.69285942332835	2.92430763063919	2.87116346589626	-1.26778982454731	0.0515115051715185	0.235775025824932
Merged-chr17-14943814-2	chr17	14943714	14943914	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175173)	promoter-TSS (NM_175173)	630.0	NM_026451	67912.0	Mm.390949	NM_026451	ENSMUSG00000050088	1600012H06Rik	-	RIKEN cDNA 1600012H06 gene	protein-coding	3.58373789864921	3.70570675153254	4.16396400490374	3.55273727656916	4.04114508619761	3.64011594351498	3.62984351418186	4.12186336672865	0.325389702817096	0.520078221831997	0.780506604646518
Merged-chr8-70543239-3	chr8	70543117	70543317	+	774.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	3542.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	3.24147148958719	3.41950456715755	3.41368238849343	3.17781742698093	3.12785242201222	3.47344298614725	3.28931819081782	3.46417106973914	0.10502719229022	0.844890953014041	0.941218991545198
Merged-chr8-35607893-3	chr8	35607784	35607984	+	708.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-18864.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	3.34143174900909	3.17035543804233	3.28435447677746	3.70906258211321	2.91194809059792	3.13655230374984	3.70908428103408	3.15965743096013	-0.46784583197199	0.4591015985819	0.74170765693035
Merged-chr15-50888612-4	chr15	50888504	50888704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_035444)	TTS (NR_035444)	445.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	6.61323692934038	6.64885365438657	6.43126005281785	6.79146463228509	6.68552511089212	6.51527915319683	6.65562343660456	6.4619058223507	-0.0758724988626311	0.723028716253265	0.889357682171032
Merged-chr15-101984441-4	chr15	101984336	101984536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19906.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	7.27517878130494	7.31444315484186	7.04572309661691	7.13960165506911	7.37456021875574	7.331827963905	7.27122222954315	7.21756448974376	0.144457321838253	0.426977872240898	0.718234557355738
Merged-chr2-131186862-4	chr2	131186779	131186979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023117)	promoter-TSS (NM_023117)	-69.0	NM_023117	12531.0	Mm.38444	NM_023117	ENSMUSG00000027330	Cdc25b	AI604853	cell division cycle 25B	protein-coding	6.55066369590989	6.70484885510669	6.37666382181941	6.4445683256665	6.80555496678411	6.77603333129998	6.82050277018052	6.35319516741523	0.264408152190804	0.236278286879891	0.546288968421482
Merged-chr3-89772791-4	chr3	89772702	89772902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027315)	promoter-TSS (NM_027315)	598.0	NR_130957	74034.0	Mm.386816	NR_130957	ENSMUSG00000042579	4632404H12Rik	-	RIKEN cDNA 4632404H12 gene	ncRNA	4.99456478960784	5.41216599794836	5.13361237962169	5.08330371747236	5.18299250391871	5.3702887622652	5.04188521177078	5.09696766569307	0.0248341949661815	0.935742647042663	0.976655534473331
Merged-chr4-32571208-4	chr4	32571101	32571301	+	940.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_026843, intron 1 of 4)	intron (NR_026843, intron 1 of 4)	461.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	4.30162411973163	4.41312569095686	4.79380073554286	4.68498985760554	4.60561147430567	4.38012629307162	4.8675582281638	4.64694064900681	0.146773008583977	0.697373745038731	0.877809397292775
Merged-chr15-77800707-4	chr15	77800604	77800804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	41471.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	7.96635401014462	7.9593469989169	7.81290383796007	7.93884739392901	8.07299487833745	8.09550903625115	8.20194240627565	7.98300180359242	0.216588972520964	0.170272400701118	0.463366692518155
Merged-chr1-61001892-4	chr1	61001802	61002002	+	996.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23988.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	5.37451653127986	5.62588176347818	5.42979764641554	5.30027323834144	4.97786476399967	4.92449477169499	4.96502415797308	5.22470283251585	-0.753721352159259	0.0132488338408295	0.0962579099679908
Merged-chr18-31634261-4	chr18	31634139	31634339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357554)	promoter-TSS (NM_001357554)	-129.0	NM_001357554	269003.0	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	8.98799420492972	8.96699003951702	8.79584130821747	9.20067172206089	8.22850030181745	8.15494496404024	8.52725214202091	8.1553403989893	-0.909412750323321	1.23023227080439e-07	5.18760087698966e-06
Merged-chr2-122572665-4	chr2	122572569	122572769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38608.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	7.77817116851153	8.33127675086996	8.6191524499666	8.39253682035568	7.86352510587732	8.17776685586863	7.96864536883308	8.27440341146895	-0.305257590004938	0.150269446714836	0.432862361299688
Merged-chr4-26345913-6	chr4	26345809	26346009	+	792.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172865, intron 1 of 4)	intron (NM_172865, intron 1 of 4)	743.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	3.38006176036911	3.46473254921929	3.74510412523786	3.58921521306778	3.56410865937262	3.2254464843807	3.63564818960236	3.49379427257902	-0.19718105190756	0.702631094262224	0.880333763717088
Merged-chr9-48985158-4	chr9	48985052	48985252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175482)	promoter-TSS (NM_175482)	-233.0	NM_001359739	235323.0	Mm.21630	NM_175482	ENSMUSG00000032267	Usp28	9830148O20Rik|AU022237|mKIAA1515	ubiquitin specific peptidase 28	protein-coding	8.95625807365289	9.20557863972093	8.80382435008574	8.42704416383701	9.08884434887286	9.1175609182808	8.94976549568539	8.85036989245921	0.163705831030863	0.399727400195757	0.697861775510926
Merged-chr10-37203961-4	chr10	37203863	37204063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65037.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	7.46663233413251	7.16675677352722	7.75528726377258	7.59064287339563	6.91522912130258	6.64487641923274	7.05806356894786	6.98809857149037	-0.816088290482565	0.000127350724514395	0.00248484024676813
Merged-chr4-136310914-4	chr4	136310789	136310989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028871)	promoter-TSS (NM_028871)	-53.0	NM_001277122	74326.0	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	7.50402961562348	7.5045208090817	6.95685617468155	7.11938259968722	7.50909752274046	7.65483300139629	7.39375149941915	7.62914215738725	0.347874280557028	0.0896141203364191	0.326791509371688
Merged-chr18-88892568-4	chr18	88892458	88892658	+	910.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018821, intron 1 of 2)	intron (NM_018821, intron 1 of 2)	1649.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	4.74866469630891	4.33320687240824	4.84770767029627	4.79869991067347	4.44328230657921	4.04142944068292	4.50527720101434	4.34950704591981	-0.783499914939436	0.0484961736031638	0.227323618103365
Merged-chr9-122310895-4	chr9	122310805	122311005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-16482.0	NM_133979	102566.0	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding	5.71551579537992	6.23715603519497	5.91067890980946	5.56510627838157	5.83430943223876	5.9440688421	5.85795065134569	5.99331061818443	0.0545799000833547	0.842660938904426	0.940251336238462
Merged-chr2-21183019-4	chr2	21182915	21183115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027728, intron 4 of 4)	intron (NM_027728, intron 4 of 4)	22350.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	7.14023784228307	6.70744470671776	7.4096613942063	7.36725397135341	6.62858417040593	6.6669265382802	7.06054301101104	6.67257527827281	-0.5849154346936	0.013947946522094	0.0997288684576727
Merged-chr6-51468746-5	chr6	51468653	51468853	+	977.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016806, intron 1 of 10)	intron (NM_016806, intron 1 of 10)	1141.0	NR_104468	53379.0	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	4.22633556547306	4.3171754217022	4.70471785639048	4.49792653981664	4.41994766420269	5.01091204727151	4.35610030725745	4.87076866387466	0.518979998294561	0.195694097467405	0.496535492233715
Merged-chr5-62854741-4	chr5	62854653	62854853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 7 of 8)	intron (NM_001170705, intron 7 of 8)	40930.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	5.45946855134171	5.66341648252182	5.94704556504949	5.6515941926025	5.33906382438025	5.48721641179453	5.28408728199909	4.94223614300896	-0.716898710352603	0.0163366734530913	0.111478101784832
Merged-chr10-98775513-4	chr10	98775415	98775615	+	885.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139127.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	4.25368216795008	4.24429516421121	3.98295766056277	4.00017121563872	4.06408964962224	3.99947192095808	3.91577311822625	4.07751006551069	-0.26978296833707	0.52028869661653	0.780730751415725
Merged-chr16-24953514-1	chr16	24953414	24953614	+	553.0	f0_c57.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-106125.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	3.45878981544789	3.22068632264093	3.21415233959735	2.56168336230552	3.71316287641885	3.74021398315775	3.4446360496127	3.71072711162534	1.70821931524826	0.0103187980448829	0.0807921819422199
Merged-chr16-92823652-4	chr16	92823525	92823725	+	934.526794	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	2449.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.80353139494681	4.29120692329488	4.51874480916513	4.42350677476479	4.61417069905891	4.64935842088959	4.23384054673533	4.43237791200198	-0.0424838845301563	0.912471736075409	0.967207481621882
Merged-chr12-3891506-4	chr12	3891422	3891622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153743)	promoter-TSS (NM_153743)	-222.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	6.38057369454349	6.21368837842399	5.90885049258504	6.35313004897783	5.98842826482904	6.19854997169164	5.92557119340643	5.95139843305557	-0.340049578069995	0.165899128449546	0.456845174245986
Merged-chr19-60817773-4	chr19	60817675	60817875	+	849.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026437, intron 3 of 8)	intron (NM_026437, intron 3 of 8)	6220.0	NM_001347464	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	3.96074213255215	3.60623660119571	3.96130359932597	4.30114559679713	4.72052804816782	3.91428412105716	4.45745761765772	4.01103669081799	0.823471531974286	0.101735452336914	0.350047264556928
Merged-chr6-99211870-3	chr6	99211775	99211975	+	708.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	54640.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	3.35861462980608	3.3989648003024	3.97942064267219	3.49200302500723	3.26914881064536	3.34420627217515	3.46268108085363	3.58186626027443	-0.533438881018576	0.325405057289285	0.636931295828241
Merged-chr1-160195132-4	chr1	160195026	160195226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025474)	promoter-TSS (NM_025474)	-89.0	NM_025474	64659.0	Mm.29599	NM_025474	ENSMUSG00000058267	Mrps14	1810032L21Rik|AL022847|Rpms14	mitochondrial ribosomal protein S14	protein-coding	9.49434845381609	9.59344234304608	9.56349757971851	9.51831306752411	9.73871106642268	9.81073192673773	9.6829440688677	9.55294409695314	0.192426296947231	0.154057120002456	0.439181632779434
Merged-chr5-145167660-1	chr5	145167560	145167760	+	726.5	f0_balb.idr	promoter-TSS (NM_133735)	promoter-TSS (NM_133735)	447.0	NM_001291248	54188.0	Mm.196884	NM_178576	ENSMUSG00000029625	Cpsf4	30kDa|C79664	cleavage and polyadenylation specific factor 4	protein-coding	3.60619733315659	3.64691056722385	3.7080458270772	3.54594860647805	3.64314272438211	3.55215166095303	3.42582856584695	3.60468098800737	-0.191919721837287	0.689504360031419	0.873418603891305
Merged-chr9-41185545-4	chr9	41185456	41185656	+	878.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20599.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	4.22120055009734	3.88297043488289	4.27923667243247	4.19447783012635	5.30232496430604	5.68600506634981	5.5069135518728	5.09749227595399	2.56307230457463	1.30436400283287e-11	1.15764744834963e-09
Merged-chr4-133872669-4	chr4	133872576	133872776	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009097, intron 2 of 21)	intron (NM_009097, intron 2 of 21)	2055.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	5.18663487246339	5.35095026830394	5.59346127034588	5.15634573700561	5.28859696144913	5.00087461611717	5.19331710185196	4.89929323714465	-0.386622680581286	0.222107108373887	0.53010635640093
Merged-chr12-104124269-4	chr12	104124215	104124415	+	953.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3681.0	NM_173024	271047.0	Mm.120265	NM_173024	ENSMUSG00000066364	Serpina3b	6A1|A030003A19Rik	serine (or cysteine) peptidase inhibitor, clade A, member 3B	protein-coding	3.30019303091624	3.28458222009323	3.74810544793166	3.23963932124246	2.92115616231827	3.53158073630466	3.40038867323473	3.17452797384098	-0.47158955780406	0.428694143032597	0.719619064235486
Merged-chr4-132939634-3	chr4	132939542	132939742	+	813.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17091.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	3.03404130112837	2.93037892101134	2.77952077604454	3.05210589299213	2.95152006087542	3.02027266790628	2.96472775321155	3.08933811451972	0.192398593547475	0.744427352005052	0.899296531468148
Merged-chr13-96388252-4	chr13	96388180	96388380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026173)	promoter-TSS (NM_026173)	-14.0	NM_026173	67463.0	Mm.86472	NM_026173	ENSMUSG00000021671	Poc5	1200014M14Rik|AV144706	POC5 centriolar protein	protein-coding	8.4023973978168	8.6164843075386	8.48976408853529	8.43554355462011	8.20916369641615	8.48908383043667	8.25547088358289	8.47937878788865	-0.161716512199403	0.311761658828532	0.623665218229603
Merged-chr3-54807211-2	chr3	54807111	54807311	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133231, exon 1 of 3)	exon (NM_133231, exon 1 of 3)	580.0	NM_133231	170767.0	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	3.91962368884828	3.98787093886716	4.32380250032738	3.8608881095583	4.34599049146082	4.09492197375573	3.95533987683033	3.9179543683429	0.194471243900395	0.660385972151368	0.858848058901942
Merged-chr11-98327548-2	chr11	98327448	98327648	+	775.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_010895, exon 2 of 2)	exon (NM_010895, exon 2 of 2)	2097.0	NM_010895	18013.0	Mm.4814	NM_010895	ENSMUSG00000038255	Neurod2	Ndrf|bHLHa1	neurogenic differentiation 2	protein-coding	2.93762682118773	3.08421334655552	3.05733637759516	2.57674376707434	2.88142568734404	3.11057138832649	2.7980197341482	2.99741569924032	0.115699381273016	0.857679162441552	0.946392149155271
Merged-chr10-117747746-4	chr10	117747639	117747839	+	957.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1381.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	4.57362645102495	4.42112211243731	4.57434374065664	4.58670997114124	5.03012202783596	4.90965713610509	4.95390950172748	4.87712848297697	0.840142263082671	0.0109427276484018	0.0841863825427573
Merged-chr4-6416176-4	chr4	6416085	6416285	+	990.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 21 of 30)	intron (NM_010945, intron 21 of 30)	38086.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	5.44661839579413	4.92929284596623	5.22541396125235	5.36026875688439	5.16545897340423	4.97580084350062	5.07286557233823	5.09415882965629	-0.327418754988088	0.29447105098667	0.606679062727726
Merged-chr16-91354341-3	chr16	91354246	91354446	+	885.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18437.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	5.11485478751327	4.74000179022463	4.67688447096031	4.8543310190859	4.65968294150286	4.58965985705965	4.97169200245069	4.59066037849596	-0.297673090804126	0.396378747130715	0.69519327480908
Merged-chr7-73617275-4	chr7	73617195	73617395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58900.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	5.67586972977158	5.99182135818547	6.01038821553013	6.12700889780567	5.93094320617288	5.71196786349608	6.00033066921138	5.87385769340895	-0.140513330374261	0.581067913534189	0.816097731204617
Merged-chr15-25624484-4	chr15	25624390	25624590	+	870.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	1940.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	4.20117751039389	4.02821547931476	3.96259941562207	3.98204742353452	4.09240120966547	4.03140811923894	4.3061693050311	4.32357037549838	0.390608210293597	0.338497802187659	0.648052521556422
Merged-chr17-83213531-4	chr17	83213394	83213594	+	769.027771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1789.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	3.17310917793069	3.07033435257544	3.23302911776479	3.12768140454871	3.49898977522567	3.34520172105903	3.38238110246904	3.0443893235461	0.682285273497947	0.21244526605373	0.517403736140369
Merged-chr7-55706978-3	chr7	55706882	55707082	+	885.144409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61202.0	NM_001310740	233274.0	Mm.44425	NM_178706	ENSMUSG00000051504	Siglech	6430529G09Rik|Siglec-H	sialic acid binding Ig-like lectin H	protein-coding	4.4903337551463	4.50302584996812	4.78380043385368	5.14862021660468	3.96372786536412	4.23995852614399	4.09489790503691	4.35852885628733	-1.43577021870475	0.000663239979894542	0.00966600297479803
Merged-chr2-173528748-4	chr2	173528646	173528846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028158)	TTS (NM_028158)	6154.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	5.33469053723328	5.00671834344879	5.14880095642122	5.21514802471068	5.35293937909884	5.22096325283894	5.33742618148984	5.49436735341726	0.316958555308993	0.275158914025367	0.586973247262613
Merged-chr2-3760434-4	chr2	3760315	3760515	+	977.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	46957.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	6.16251215304089	5.52928379870651	5.65769961236315	6.26181358061649	5.4593918670401	5.13870715919835	5.40395656028579	5.80044578153243	-0.793735737402713	0.0134644864082217	0.0973498802613749
Merged-chr17-28697534-4	chr17	28697426	28697626	+	973.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	4958.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	5.75770711223498	5.40218956219223	4.68880339957147	4.83495817828298	5.59244625886437	5.49240720766241	5.16930178178398	4.86289631593411	0.136630556808316	0.731135025453278	0.893446298186013
Merged-chr10-44002742-4	chr10	44002659	44002859	+	870.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172393, intron 1 of 19)	intron (NM_172393, intron 1 of 19)	2087.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	4.35706781094913	4.75689253376842	4.06573040735297	4.21853382629184	4.64985867772443	4.39556265260456	4.04944888929943	4.4392397156583	0.0786924107035804	0.854773182885224	0.945298752280211
Merged-chr2-167842535-4	chr2	167842420	167842620	+	826.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89807.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	4.06549240667897	3.68490924616975	3.92780981369373	4.03056476017549	3.92078946733651	3.58204063110765	3.91118070935168	4.14784775110039	-0.0845030330441333	0.855546874979567	0.945674414504706
Merged-chr10-80579169-2	chr10	80579069	80579269	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1873.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	2.50702752027454	2.56113462344848	2.43465245186649	2.45418989234796	2.6981174843573	2.8122064996623	2.69609944060233	2.97583597732258	1.60781394306705	0.0149657442735045	0.104651410909104
Merged-chr16-93818919-4	chr16	93818834	93819034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-13187.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	5.99405508654185	5.71098731298124	6.18853437446688	6.22855046358724	6.13240507406626	6.51406897354449	6.21484356282145	6.82458233492904	0.59066535559035	0.0307889943054835	0.170189471590433
Merged-chr6-71208875-4	chr6	71208791	71208991	+	981.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9012.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	4.81230193094938	4.79148538408561	4.33726789023284	4.59400903047604	4.70267807705265	4.31255865702138	4.61416412863287	4.33466490922402	-0.294146317952943	0.441874334092215	0.728700552021449
Merged-chr8-69974416-4	chr8	69974301	69974501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113346)	promoter-TSS (NM_001113346)	-18.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	7.44443602372466	7.47148201721047	7.3478967951775	7.2359421365533	7.58110942369499	7.47305201566699	7.23826830143638	7.07139787214653	-0.0132425574465697	0.9467573950368	0.98095209334417
Merged-chr1-14506642-3	chr1	14506539	14506739	+	897.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-196440.0	NM_010164	14048.0	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	3.77322861416372	4.08326241817069	4.2354366998992	4.28128693571602	3.42378140513582	3.77769014662608	3.70290456299618	4.02285715733647	-1.05877217687715	0.031078225374419	0.171322568457696
Merged-chr1-152787032-6	chr1	152786913	152787113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-13140.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	4.60742087750591	4.93545633009378	5.20366639351269	4.48644792643848	4.96325443758899	4.98861504458038	4.93339045112698	4.95416842865218	0.274917179536631	0.440843571816755	0.728164773822774
Merged-chr18-6104679-4	chr18	6104574	6104774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039692, intron 3 of 18)	L1MDa|LINE|L1	31424.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	5.78758306142241	5.66648975136607	5.68776763840074	6.05981300606003	5.97312358392036	6.05593799085193	5.52166002368662	5.735125318712	0.0237296722904747	0.931742111903652	0.97535206477795
Merged-chr8-95332076-7	chr8	95331954	95332154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024467)	promoter-TSS (NM_024467)	-104.0	NM_024467	79233.0	Mm.350514	NM_024467	ENSMUSG00000046556	Zfp319	AI225750|AI413472|Znf319|mKIAA1388	zinc finger protein 319	protein-coding	6.49624018647785	6.78048643247017	7.234417666717	6.65899393121249	6.24690032334389	6.47044063461422	6.21793482789596	7.05467209644641	-0.397674240046958	0.160025315859771	0.447864280018072
Merged-chr2-35346215-4	chr2	35346125	35346325	+	891.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9216.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	3.96761800913528	4.0719479155734	4.11675596542539	4.18169926047178	4.44226679983217	3.65846374575209	4.18820233202281	4.36744575423977	0.291355547658806	0.520908021105617	0.781067630728995
Merged-chr19-55232388-4	chr19	55232279	55232479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 4 of 20)	intron (NM_001081076, intron 4 of 20)	8857.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	8.98168416504062	9.29579166765627	9.22775189091814	8.98253551415515	9.19678228416816	9.32210700924198	9.24028108157731	8.91379971860744	0.0606256208628458	0.712115806120246	0.884727078056288
Merged-chr4-34430779-3	chr4	34430649	34430849	+	940.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119866.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	3.46219359823112	3.18667026168339	3.41056778193449	3.82064778623599	3.16269422482656	3.08092645821509	3.10311689295674	3.35438664186094	-1.18503459866918	0.0434529306620199	0.212131565735569
Merged-chr2-129408660-4	chr2	129408545	129408745	+	827.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37506.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	4.35595601702448	4.16297837292044	4.06142661224661	3.76632110599863	3.94592374771855	3.59445359992171	4.40783871091735	4.01064531573441	-0.19473830802509	0.69009175482768	0.873711152914966
Merged-chr1-185331522-3	chr1	185331435	185331635	+	758.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011794)	promoter-TSS (NM_011794)	-624.0	NM_011794	23827.0	Mm.227549	NM_011794	ENSMUSG00000026617	Bpnt1	BPntase	bisphosphate 3'-nucleotidase 1	protein-coding	3.3228835478274	3.48509199262893	2.98691759286696	2.92780931068156	3.56668928617017	3.75986498436668	3.47608065155685	3.32154540928552	1.20106396402861	0.0360917210922317	0.188853386431226
Merged-chr2-131056414-3	chr2	131056347	131056547	+	736.43335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033615, intron 5 of 20)	intron (NM_033615, intron 5 of 20)	7367.0	NR_136922	110751.0	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	2.7886363241744	2.7748797975304	2.71129637159117	2.48274305747392	3.33449914158382	3.5122733518417	2.98799824553613	3.48214089304473	2.96810640198194	3.8644037236529e-06	0.000118053387401669
Merged-chr5-116031346-3	chr5	116031237	116031437	+	605.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6909.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	3.38462162252168	3.79555581823707	3.38505967617703	3.34929813584163	3.33971394211459	3.37622043902268	3.18744039483675	3.69216971765485	-0.269323852585509	0.622328213247114	0.83831156940409
Merged-chr6-121227006-4	chr6	121226903	121227103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_017379)	TTS (NM_017379)	16269.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	7.13607100529683	6.86981420732867	6.89650871139324	7.26017549480355	7.35695382617629	7.12850614875163	7.26291702909262	7.22127648877167	0.25406057344372	0.201721440523174	0.504156139969769
Merged-chr9-119568874-3	chr9	119568779	119568979	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021544, intron 1 of 27)	intron (NM_021544, intron 1 of 27)	-6201.0	NM_001253860	20271.0	Mm.103584	NM_021544	ENSMUSG00000032511	Scn5a	Nav1.5|Nav1.5c|SkM1|SkM2|mH1	sodium channel, voltage-gated, type V, alpha	protein-coding	5.45844620777872	4.92491257176049	5.86911335920601	5.19942978293411	3.83924301137404	4.19154392328675	4.57672790991394	4.34980242860505	-2.46253552680365	2.18335786793823e-08	1.08450264956019e-06
Merged-chr9-99109343-4	chr9	99109247	99109447	+	794.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	30864.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	3.95449447351295	3.80786223060761	4.05589154621228	4.19430933353008	4.1545600147754	4.12966593129943	4.21728931126952	4.31521049069731	0.461270048459299	0.271219502819806	0.582992988776974
Merged-chr7-130647487-2	chr7	130647387	130647587	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004468, intron 3 of 21)	intron (NM_001004468, intron 3 of 21)	-45069.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	2.76558251972288	2.68700053650204	2.69557059956793	2.67829458438089	3.06167827873968	3.06743745334182	2.9456397074513	3.12160431805808	1.54845473318198	0.00962704908684203	0.0768394784445179
Merged-chr6-35133829-4	chr6	35133733	35133933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164411)	promoter-TSS (NM_001164411)	-96.0	NM_001164414	53621.0	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding	9.33481269997099	9.19135984680253	9.20784791926963	9.32807291434771	9.04861514671388	9.2146914471916	9.24205628437341	9.02772517306275	-0.164643977802554	0.247359079950221	0.558448742444073
Merged-chr18-64962535-4	chr18	64962381	64962581	+	950.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-61046.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	4.43385898221814	4.90441754530929	4.48314114780552	4.78126796632105	5.21754542482585	4.87822319254631	5.14483411238338	4.73941463017677	0.682750175209234	0.0570873696437566	0.250391800720383
Merged-chr11-59506323-4	chr11	59506227	59506427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_135273, exon 1 of 4)	non-coding (NR_135273, exon 1 of 4)	313.0	NM_001291014	268417.0	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	5.51726651131238	5.3608951382713	5.64892305698267	5.66341235890659	5.46434271107454	5.82180144094579	5.43465058914932	5.39923434663399	-0.0412389008456675	0.883255658589438	0.956033847067461
Merged-chr12-85108828-4	chr12	85108735	85108935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1998.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	5.98802910411126	6.0919129639163	5.87982011688904	6.2671862540555	5.59897949097336	5.53333018458347	5.70617654924082	5.82914553504126	-0.670862135679057	0.00944811326962438	0.0758096330085214
Merged-chr18-82826326-4	chr18	82826218	82826418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29579.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	6.96844225865874	6.85824697797768	7.39174356389726	7.37505850626886	6.8335596354183	6.8757988163583	6.98468124992738	6.89868956676657	-0.387492809594343	0.0719198721970202	0.288118193072225
Merged-chr17-23983592-4	chr17	23983481	23983681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8351.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	6.04764034815945	6.29354983191661	6.00402061773587	6.62983287823203	6.18445936660607	5.75880838549457	6.1620245447272	6.40446078621307	-0.208571706792976	0.450180796694382	0.735193734723172
Merged-chr5-29950600-4	chr5	29950514	29950714	+	985.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA9|LINE|L1	-62500.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	5.08609354714296	4.93601818002213	4.65309904585044	4.74277010865635	5.07141000620879	5.09637339565253	5.03099899315436	4.46628153960607	0.170469130256922	0.631957734758323	0.84364113460172
Merged-chr19-10284747-1	chr19	10284647	10284847	+	617.0	f0_balb.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	20130.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	3.43419112797775	3.15925255071646	3.38249771558737	3.56073353006761	3.02767903217815	3.26046414550917	3.07469298388805	3.38057976246218	-0.78383674266727	0.16700657626855	0.458486513335628
Merged-chr2-181282393-4	chr2	181282293	181282493	+	920.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 1 of 9)	intron (NM_198169, intron 1 of 9)	5573.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	4.63119727537816	5.0485067780172	5.16394159022803	4.17863327349195	5.07487777194817	5.49650501661513	4.69445941621334	4.53841181444723	0.385487946916018	0.379403216265186	0.681975341057594
Merged-chr10-13474437-4	chr10	13474345	13474545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195065)	promoter-TSS (NM_001195065)	-49.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	5.52588609455927	5.14417239286951	5.27464789965498	5.64886148126415	5.36505133334174	5.25088707361559	5.11921620489643	5.27101423425568	-0.303885892553724	0.31747596880835	0.629407625652718
Merged-chr9-106386570-5	chr9	106386397	106386597	+	824.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17865.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	3.49056321342883	3.26256840275949	3.54581743275453	3.49354998193402	3.38396199765203	3.86424855964988	3.36198409397102	3.64664495639647	0.396546937752259	0.443864774973429	0.730375449472541
Merged-chr6-47358950-2	chr6	47358850	47359050	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94782.0	NM_001355551	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	3.4067933411143	3.41325591918175	3.29550196217907	3.05210976813414	3.2887901137868	3.28510023887009	3.39341696534622	3.40533473015045	0.198665931778599	0.711353662235907	0.884405406929924
Merged-chr2-3323342-4	chr2	3323246	3323446	+	952.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008708, intron 11 of 13)	intron (NM_008708, intron 11 of 13)	9282.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	5.37638886448075	4.45519149903603	4.73605214192227	5.37684114813391	4.95036014032125	5.03112109662548	5.00783322465942	4.77391965432267	-0.221438804244724	0.569062441859992	0.809199607422733
Merged-chr4-119127440-4	chr4	119127352	119127552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 2 of 9)	intron (NM_011400, intron 2 of 9)	18707.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	6.65310184212512	6.56229299043051	6.40720726904462	6.49376422628366	6.57036685502628	6.36787395226275	6.77406182387558	6.82955358468959	0.171253710392477	0.432736687527185	0.722611204268057
Merged-chr17-42857706-4	chr17	42857644	42857844	+	838.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009847, intron 1 of 17)	intron (NM_009847, intron 1 of 17)	18680.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	3.92705685804196	3.63162915513804	3.52574337211333	3.61197223125003	4.26432498948135	4.19381492355426	3.95876853538476	4.15138442090568	1.3135561558897	0.00289920982386069	0.0311329639980587
Merged-chr9-25309906-2	chr9	25309806	25310006	+	959.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57014.0	NM_001359738	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	3.11279441204729	3.11354782478012	3.05112990073565	3.18500384859722	3.1124406928664	3.28318234724031	3.26988733614473	3.1116432387785	0.277609400614573	0.612484565493942	0.832789074284334
Merged-chr11-109615344-1	chr11	109615244	109615444	+	543.0	f1_balb.idr	Intergenic	Intergenic	-3955.0	NM_145940	52639.0	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding	2.85598696492374	2.95436102479281	2.78327273787725	3.14019144197995	3.17980759134867	3.39243380451636	3.10248262749729	3.22442567622619	1.07173465173297	0.0805857455326063	0.307896356216376
Merged-chr5-67427693-7	chr5	67427581	67427781	+	972.1904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164806, exon 1 of 5)	5' UTR (NM_001164806, exon 1 of 5)	118.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	4.14352556867781	4.02445899910616	4.44423965464129	4.35429341214835	4.16451681446946	4.26943925517573	4.30458657133665	4.23472943350104	-0.0409291135060718	0.918448190913943	0.970001539869778
Merged-chr1-136609032-4	chr1	136608933	136609133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15868.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	5.47448394869995	5.16892804777908	5.47543338117806	5.53298285165355	5.3282749494647	5.676041135645	5.62647199578946	5.26212318114709	0.0916390032315617	0.753742936551314	0.902814735650825
Merged-chr1-80453230-4	chr1	80453143	80453343	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040460, intron 2 of 2)	intron (NR_040460, intron 2 of 2)	7311.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	5.75744758243678	4.98287583088103	5.82246997317675	5.4206597637798	5.3604479979113	5.29398490533396	5.25886160785235	5.43145960735094	-0.330230836878196	0.304552117218332	0.617088876753784
Merged-chr9-62829331-2	chr9	62829231	62829431	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-9456.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	4.07494030030322	4.38182215053011	4.12669172090165	4.16166234041312	4.40994949865515	4.35007202594356	4.49241507636663	4.353355668607	0.50888859488841	0.183688714461581	0.480761104819123
Merged-chr1-155483822-4	chr1	155483736	155483936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	43275.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	7.22697001306238	7.20975605559116	7.44939756164315	7.45004472437047	7.05696806194935	7.10986957150789	7.43072916791483	7.20098755704513	-0.189213529897856	0.327545189772587	0.639011622936083
Merged-chr3-67374097-4	chr3	67374003	67374203	+	886.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039543)	promoter-TSS (NM_001039543)	6.0	NM_010801	17349.0	Mm.10414	NM_010801	ENSMUSG00000048416	Mlf1	HLS7	myeloid leukemia factor 1	protein-coding	4.78144367764664	5.11519253742596	5.09451825585539	5.44058305260157	4.44246521587322	5.10409830810426	4.59387862163888	4.61185905859477	-0.888277322967417	0.0174449183975082	0.116724181859018
Merged-chr8-39643713-3	chr8	39643617	39643817	+	765.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-1039.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	3.55673700274561	3.55826841489304	3.50358562489447	3.59051379367818	3.62278701893385	3.30685451424373	3.49015401570131	3.55524693636265	-0.162852871968976	0.742007844253161	0.898417179766546
Merged-chr6-137412176-4	chr6	137412030	137412230	+	832.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 13 of 26)	intron (NM_011216, intron 13 of 26)	1409.0	NM_001164403	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	3.20655692665662	3.25169340906374	3.14526217899539	3.23118821319541	3.23089457876659	3.31801024000747	3.41407660835187	3.42632310459802	0.493985476463118	0.345421220236275	0.653728716702946
Merged-chr1-184615522-4	chr1	184615425	184615625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57834.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	5.40139381075593	5.09916311327512	5.18728415860916	5.35413611776369	5.40014669024448	5.36319540317322	5.34697506317572	5.60614847802667	0.286261622014785	0.317943521180564	0.629807413063982
Merged-chr2-174439654-4	chr2	174439544	174439744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022325)	promoter-TSS (NM_022325)	-605.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	7.53626160085097	7.51238188060315	7.57363878688633	7.45752056374689	7.78246142034317	7.78589293742054	7.58852215179961	7.61212022746161	0.239538575712017	0.154691886915348	0.439974978771979
Merged-chr10-128270409-4	chr10	128270288	128270488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019963)	promoter-TSS (NM_019963)	-110.0	NM_019963	20847.0	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	8.29309284816716	8.44261535978232	8.24294429765463	8.15043599883042	8.41973338255079	8.41478377901107	8.27770389266925	8.10196335388854	0.0365025917757536	0.82568994365833	0.933159928336386
Merged-chr11-88012817-2	chr11	88012712	88012912	+	833.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-14514.0	NM_001168471	68097.0	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	3.47750328154014	3.19943521914364	3.30733286227054	3.39220681347526	3.8589850665382	3.48078631264974	3.1699871209703	3.42170002336471	0.565308149302862	0.304900394912225	0.617425354648188
Merged-chr11-23855547-4	chr11	23855450	23855650	+	989.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39720.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	4.89755012366827	4.85253782995914	4.89837172034981	4.53027883271927	4.79175347549175	4.76949392669279	4.90775673504448	4.54668043434917	-0.0519543809438703	0.881936987658493	0.955514518623761
Merged-chr10-127650257-4	chr10	127650161	127650361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009284, intron 4 of 21)	MERVL_2A-int|LTR|ERVL	7275.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	5.4871708337332	5.15330283973907	5.24523770152448	5.40943697665462	5.49060262812561	5.48691523263614	5.85684596907311	5.6399195935149	0.500979012110149	0.0773550127007949	0.300748815442531
Merged-chr18-67776083-3	chr18	67775973	67776173	+	686.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045376)	TTS (NR_045376)	1197.0	NM_028112	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	3.43318592352882	3.55961032573189	3.26093556032663	3.06199582950228	3.28064460672805	3.54984691349229	3.18714224159988	3.48442514694576	0.161243199016345	0.771013924244706	0.910353175958998
Merged-chr12-35418125-4	chr12	35418012	35418212	+	997.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116877.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	5.04153289730872	5.29881438194691	5.04236615760486	5.30127528763319	5.89080968209404	5.90774264647462	5.97366729611542	5.63395605118343	1.13198757266446	5.57229914707595e-05	0.00124257732139636
Merged-chr4-154163498-3	chr4	154163385	154163585	+	766.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2801.0	NM_026388	67808.0	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	3.22044334568323	3.51974888308992	3.6192007064968	3.43164407948041	3.47934735578181	3.52077153696417	3.60373716604157	3.34587945610223	0.119484230711622	0.814499928438608	0.92840582625946
Merged-chr8-84656947-4	chr8	84656851	84657051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	5901.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	7.71973699019205	7.93158320036796	7.68163391253227	7.3541720160912	7.38711481289887	7.36522634523233	7.45470869257476	7.09619416203395	-0.460308502291995	0.0243278860012418	0.145760488020403
Merged-chr11-69948421-7	chr11	69948318	69948518	+	944.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009204)	promoter-TSS (NM_009204)	-221.0	NM_001359114	20528.0	Mm.10661	NM_009204	ENSMUSG00000018566	Slc2a4	GT2|Glut-4|Glut4|twgy	solute carrier family 2 (facilitated glucose transporter), member 4	protein-coding	3.4970655326895	3.68898032590457	3.8054290495869	3.37979981118935	3.79304175958624	3.67104369437343	3.36482939968642	3.55229605790779	0.0525354641560718	0.917947410317335	0.969760089182615
Merged-chr1-159334410-3	chr1	159334319	159334519	+	667.333313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_011931, intron 18 of 19)	RMER1B|Other|Other	-5888.0	NR_028518	100217414.0	Mm.450690	NR_028518	ENSMUSG00000089536	Scarna3a	MBI-114	small Cajal body-specific RNA 3A	ncRNA	3.29709859652523	3.48785631986037	3.16512948495915	3.60831899515017	3.7384259256782	3.53170623000528	3.40526877547833	3.62735753482737	0.55677726963452	0.29838549057025	0.610488248958896
Merged-chr6-127542166-3	chr6	127542074	127542274	+	875.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35801.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	3.30841914268327	3.3622852441274	3.2437343954997	3.64843139554169	3.75269765202277	3.42215667576133	3.3589033951629	3.90522671254302	0.700444828938469	0.204528310212492	0.507782437802491
Merged-chr15-81481201-4	chr15	81481073	81481273	+	996.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14857.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	5.09682476819027	5.37769695624419	5.09768335872203	5.18409935287382	4.95672459469349	5.06065714374577	4.97145905836884	4.9920486607601	-0.390857078583563	0.199679424316113	0.501587441537147
Merged-chr5-72818777-4	chr5	72818708	72818908	+	936.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	MIRb|SINE|MIR	49640.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	4.99424505081157	4.58275275221466	4.99510453179165	4.89401322291432	4.50150710852524	4.34446690649163	4.40257162467024	4.99162843973348	-0.61124516423699	0.108295925579734	0.363192408916317
Merged-chr10-59335078-1	chr10	59334978	59335178	+	545.0	f0_balb.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	11782.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	2.88479015179941	2.82545363548494	2.99218260422317	2.86768350427718	2.61652561118464	2.43909566795499	2.63148713925708	2.49615490540243	-1.80578299730663	0.0122324884712574	0.0911628412622374
Merged-chr14-63117207-4	chr14	63117114	63117314	+	914.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5248.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	3.8868461921787	4.34385552166043	4.04139390315881	4.17394361827153	4.02367799668142	4.16467303154197	4.02432348508774	3.98974834576447	-0.208188967564252	0.621821031257006	0.838030846991242
Merged-chr15-25940555-4	chr15	25940448	25940648	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025459)	promoter-TSS (NM_025459)	-154.0	NM_001277315	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	4.68530780245765	4.64405952865426	5.07886141673818	4.82854103661537	4.21708575828367	4.12405303506413	4.93633913032801	4.6829647536886	-0.619522477988223	0.13287265707795	0.405981407029165
Merged-chr3-152783944-4	chr3	152783841	152784041	+	871.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025662, intron 10 of 10)	intron (NM_025662, intron 10 of 10)	69841.0	NM_025662	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	4.16557541170596	4.03737756940489	4.16620841175545	4.060912731044	4.07662547915428	4.09499269379371	4.27439031297573	4.16364828752648	0.126490197131669	0.751798255732941	0.902294431953731
Merged-chr6-31219134-4	chr6	31219064	31219264	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110471)	promoter-TSS (NR_110471)	-690.0	NR_110470	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	4.29069700542531	4.13856213071107	3.65948306291465	4.12320101999546	3.92611380978796	3.77838210847934	4.06554153756549	4.03507761786238	-0.321882524519608	0.477768376794685	0.753915333040868
Merged-chr11-49712059-4	chr11	49711987	49712187	+	909.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212484, intron 1 of 11)	CpG	635.0	NM_212484	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	4.55415796063053	4.40193435337984	5.0811600924455	4.49995837862808	4.98556278693234	4.54986161232602	4.53413379754282	5.04863136350269	0.323454534611603	0.408044015747304	0.704141873054191
Merged-chr4-132768195-4	chr4	132768106	132768306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011284)	promoter-TSS (NM_011284)	-154.0	NM_011284	19891.0	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	7.73758925076996	7.55454494229644	7.06997535769302	7.07599543228368	7.56456361108328	7.70036931651732	7.62274533571431	7.49978157779851	0.282430854287824	0.192268886830524	0.491824448203475
Merged-chr6-136658734-5	chr6	136658596	136658796	+	909.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025806, intron 1 of 10)	RSINE1|SINE|B4	3197.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	4.03077362694645	3.91223077400244	4.24585640900746	4.15238975009662	3.92087591710493	3.89320880976888	3.75919936416989	4.02894150280297	-0.515357815006577	0.234052962587336	0.543723238550186
Merged-chr11-86757793-7	chr11	86757671	86757871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356393)	promoter-TSS (NM_001356393)	-204.0	NM_001356393	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	7.45523643890782	7.55177777332733	6.87080191979404	6.77618810806288	7.52187681977989	7.91701102068585	7.23912108324809	7.56742944051337	0.506350843408832	0.0451356901546471	0.2172808169048
Merged-chr2-157425911-3	chr2	157425809	157426009	+	939.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 1 of 13)	intron (NM_001025395, intron 1 of 13)	1616.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	2.93767109165323	2.99101410526632	3.21166705299667	3.18025617419215	2.77542114264184	2.77266185480491	2.98638375911018	2.59035661170221	-1.36753871292624	0.0391154433813837	0.19884288990455
Merged-chr1-174052354-4	chr1	174052239	174052439	+	929.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1964.0	NM_146716	258711.0	Mm.377648	NM_146716	ENSMUSG00000047048	Olfr432	MOR123-2	olfactory receptor 432	protein-coding	4.73035349788123	5.14626559489074	4.88937393282166	4.4057947681598	4.8952037202713	4.91088964742019	5.65989107979558	5.02692017339702	0.680067012787637	0.0780075970953459	0.30203225915491
Merged-chr9-72274892-4	chr9	72274789	72274989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311105)	promoter-TSS (NM_001311105)	1.0	NM_001311105	235469.0	Mm.242791	NM_146224	ENSMUSG00000038535	Zfp280d	A930005F02Rik|BC027163|Suhw4|ZNF634|Znf280d	zinc finger protein 280D	protein-coding	6.74285119727147	6.93869353932607	6.53631045865534	6.95415452486644	6.78608602316494	6.74806396117787	7.04265680699406	6.81079713925983	0.0487804520917246	0.818174442921467	0.930226638011454
Merged-chr6-38338175-4	chr6	38338063	38338263	+	982.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 2 of 8)	intron (NM_028864, intron 2 of 8)	16440.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	5.01410858296706	5.07402689765722	4.74612499068348	5.01968827289818	5.44896653128851	5.04487023952477	5.32118222849974	4.82561209484472	0.417493729147081	0.208048722266475	0.512183689818924
Merged-chr2-91508610-4	chr2	91508508	91508708	+	986.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172668, exon 37 of 38)	exon (NM_172668, exon 37 of 38)	-18154.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	5.17446026467108	5.8319530421958	5.02579864440099	5.22145085655942	5.78578634127749	5.71606177446237	5.63940263511889	5.36802925285295	0.492134123430774	0.125753784886181	0.393815330829051
Merged-chr6-116460136-4	chr6	116460050	116460250	+	786.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009662, intron 1 of 13)	intron (NM_009662, intron 1 of 13)	1028.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	3.69555420049433	3.78475952927927	3.52026874915123	3.96028280935251	3.80032090952311	4.01956259909765	3.78572550277919	3.7991844292092	0.247613236091117	0.598544019224202	0.825987886019831
Merged-chr5-96922845-4	chr5	96922693	96922893	+	804.016663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131152, intron 2 of 2)	GA-rich|Low_complexity|Low_complexity	1521.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	4.61106658066122	3.99971916811398	4.42781747820634	4.55676782287495	4.02702885675554	4.4312778978173	4.09753567535033	4.06091641716523	-0.648949718745326	0.128388111296197	0.398662364173623
Merged-chr17-35201207-4	chr17	35201124	35201324	+	975.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013693, intron 1 of 3)	intron (NM_013693, intron 1 of 3)	783.0	NM_013693	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	5.27157991188555	5.67608160326321	5.17679980709598	4.68965103989154	5.36415760531304	5.81408611329676	5.21520860932315	4.83534012682664	0.191634832343159	0.620189805679187	0.837084318577183
Merged-chr3-37312071-2	chr3	37311971	37312171	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001255992)	promoter-TSS (NM_001255992)	375.0	NM_145825	207175.0	Mm.344708	NM_145825	ENSMUSG00000045031	Cetn4	-	centrin 4	protein-coding	4.54524110898499	4.71229066284434	4.6654621957346	4.66847336376701	4.49767317700525	4.54456043365626	4.91330321879567	4.36453162427565	-0.124414992923595	0.732120218609372	0.893930797678999
Merged-chr1-172578274-1	chr1	172578174	172578374	+	916.0	f0_c57.idr	Intergenic	Intergenic	12294.0	NM_029084	74748.0	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	2.68125221434351	2.60512367420794	2.51859118814292	2.27981689497511	3.65188059640642	3.36595988415192	2.88504098846836	3.02118918447532	3.84410469210692	4.10976247033017e-07	1.55187683223146e-05
Merged-chr3-30977341-4	chr3	30977250	30977450	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7935.0	NM_001165956	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	5.04413024070212	5.42452682771377	5.11387250096913	5.33728695475607	5.08514642567851	5.14877709314503	5.30271912859039	5.07645440813223	-0.180799160523162	0.551586782826938	0.799035241265846
Merged-chr5-117159604-4	chr5	117159483	117159683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	ID_B1|SINE|B4	25995.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	6.33711652994584	6.54552455833529	5.72973135384215	5.90550235048268	6.58802208676372	6.51380852308838	6.32338014595908	6.2600004754553	0.399847694028385	0.141653671350498	0.418816599528155
Merged-chr4-135182050-4	chr4	135181973	135182173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61428.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	6.30579006110783	6.94794141613259	7.2391712983692	6.68150744193992	6.26035134330145	6.77335932129984	6.39026303058094	6.94154793512851	-0.313930465529528	0.25997396248121	0.571732270760985
Merged-chr14-13960190-1	chr14	13960090	13960290	+	633.0	f0_balb.idr	intron (NM_001359900, intron 1 of 8)	RSINE1|SINE|B4	1123.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	3.28352575067989	3.1667478133952	3.38983658900203	3.1044451619619	3.25566779049924	3.08104563266545	3.09609063320396	3.43714265685146	-0.0188454805817275	0.973005140315581	0.990282195228149
Merged-chr9-41059264-1	chr9	41059164	41059364	+	564.0	f0_balb.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	20242.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	2.73998689347788	2.64838830774688	2.91378038723807	2.69087707430319	2.42416811749535	2.71580119371152	2.60218651409839	2.7389322576114	-0.648192489037542	0.338573570054262	0.648064797414472
Merged-chr10-86731222-4	chr10	86731126	86731326	+	950.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153595, exon 5 of 5)	exon (NM_153595, exon 5 of 5)	18461.0	NM_153595	103220.0	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	4.07621765502987	3.64594716293407	3.89227761957726	3.62790174754276	3.53421308613696	4.15822944617891	3.87550118722715	4.03059523514179	0.279081218180772	0.566380504264203	0.807861795964639
Merged-chr5-121660123-1	chr5	121660023	121660223	+	734.5	f0_balb.idr	promoter-TSS (NM_028227)	promoter-TSS (NM_028227)	387.0	NM_028037	71985.0	Mm.45423	NM_028037	ENSMUSG00000029456	Acad10	2410021P16Rik	acyl-Coenzyme A dehydrogenase family, member 10	protein-coding	3.31163499002682	3.67113303060617	3.53149081624636	3.4170204168922	3.47271388652699	3.15787226815258	3.300539875907	3.47819990871256	-0.433997733294811	0.416492590820614	0.710549017832809
Merged-chr1-4785698-4	chr1	4785597	4785797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033530)	promoter-TSS (NR_033530)	29.0	NM_001177658	27395.0	Mm.182927	NM_025300	ENSMUSG00000033845	Mrpl15	HSPC145|MRP-L7|Rpml7	mitochondrial ribosomal protein L15	protein-coding	7.58520076792782	7.62549146103768	7.71159576064139	7.66838527197022	7.51861447603189	7.70992600409681	7.50471306493728	7.3717685663726	-0.157876752922008	0.35939767265151	0.665269607786133
Merged-chr11-87423031-4	chr11	87422918	87423118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	U1|snRNA|snRNA	-4573.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	7.04980428809438	7.45671902642904	7.2628082894323	6.28541447246418	7.03433415995324	7.19119450380148	7.06288596883042	7.02154264240481	0.00294831404342372	0.991336632665057	0.996745793587504
Merged-chr11-34072493-4	chr11	34072391	34072591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 7 of 20)	intron (NM_010696, intron 7 of 20)	25563.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	7.90092129797009	7.79932319579701	7.99166112592345	7.96876268613508	7.7115697280629	7.83647378045786	7.90610539845675	7.64502816738831	-0.184890983236945	0.2659508993441	0.577648502163916
Merged-chr6-87919972-2	chr6	87919872	87920072	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173737, intron 3 of 6)	MTD|LTR|ERVL-MaLR	5996.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	3.40377151428315	3.28203817119695	3.15969830412955	3.40877006782849	3.27291697944947	3.67863565106123	3.54613444296049	3.34546636595971	0.487083510616352	0.357805293934187	0.663866486000028
Merged-chr19-10022554-6	chr19	10022439	10022639	+	823.4055179999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153790, intron 1 of 10)	intron (NR_153790, intron 1 of 10)	4345.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	4.63463358140191	3.97682398401579	4.03253415717606	4.75937406111443	4.22693787334586	4.58166659090675	4.06938522124272	4.23271920799407	-0.284741601090641	0.537468460660411	0.791093024283947
Merged-chr1-180766851-4	chr1	180766769	180766969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40826.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	6.46008653136927	6.72812636351591	6.20304780471142	5.83667628123365	6.38941650699162	6.56867340238449	6.49276438442003	6.3703973341296	0.175695150410717	0.514166388687127	0.776908938806569
Merged-chr11-47398048-4	chr11	47397942	47398142	+	989.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18740.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	4.9512587909652	5.85238485452843	5.80489192164839	5.59700274254154	6.12724456384484	5.8078060302166	5.88489504438099	5.39675413020748	0.392178976174856	0.235869462641418	0.545896142740888
Merged-chr2-91191807-2	chr2	91191707	91191907	+	771.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001177730, exon 4 of 10)	exon (NM_001177730, exon 4 of 10)	3228.0	NM_013839	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	2.84247133589727	2.95953244983683	3.24229842330814	2.75489169399445	3.38711018445832	3.29856449772311	3.22918577832307	3.63367295862196	1.73294187718868	0.00325278676844183	0.0340035408122956
Merged-chr11-85849274-4	chr11	85849169	85849369	+	802.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16654.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	3.89926017808517	3.70415034826953	3.94759542103052	3.81437088295116	3.84479695617907	3.80723024176754	3.97600592757384	3.94520784878741	0.154067883682195	0.723978823134522	0.889926581906748
Merged-chr13-94298629-4	chr13	94298504	94298704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER77B|LTR|ERVL	-12773.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	6.66370981683383	6.76207678061693	6.74001001998857	7.14371676456928	6.69045276392304	6.64175404213777	6.59971481088756	6.83330415004715	-0.234995572997301	0.286303620600746	0.59798718890638
Merged-chr7-3645105-4	chr7	3644997	3645197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146176)	promoter-TSS (NM_146176)	-172.0	NM_146176	232791.0	Mm.358731	NM_146176	ENSMUSG00000035632	Cnot3	A930039N10Rik	CCR4-NOT transcription complex, subunit 3	protein-coding	9.25091321295284	9.33261074220085	9.37282356764839	9.26511044639468	9.28468988912606	9.36207121389428	9.33242288226981	9.35619450559344	0.0343467882842495	0.794116697432481	0.920358789920322
Merged-chr14-56668210-4	chr14	56668124	56668324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023773)	promoter-TSS (NM_023773)	-24.0	NR_153396	75339.0	Mm.152466	NM_023773	ENSMUSG00000079184	Mphosph8	1500035L22Rik|4930548G07Rik|AU040635	M-phase phosphoprotein 8	protein-coding	8.58465595833418	8.5758842852463	8.62204896814302	8.65046378368878	8.37940107546151	8.39344253623037	8.42686980060916	8.34470223294261	-0.282776459595589	0.0472168645059545	0.223686007108918
Merged-chr14-60771258-4	chr14	60771151	60771351	+	853.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183175, intron 1 of 3)	L1MB2|LINE|L1	3117.0	NM_183175	239126.0	Mm.319636	NM_183175	ENSMUSG00000071347	C1qtnf9	9130217G22Rik|CTRP9|Ciqtnf9	C1q and tumor necrosis factor related protein 9	protein-coding	4.64467915648588	4.40553301660375	4.45620784449815	4.27799094667264	4.19440204902985	4.62745314230917	4.43558726045583	4.0774255572395	-0.231537249289395	0.563185614818937	0.806173733075859
Merged-chr15-63506091-1	chr15	63505991	63506191	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-26483.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	3.23801098832557	3.34321400835239	3.62508106119786	4.01850206561146	3.02522299162662	3.35177200245624	3.28933280418277	3.35930042869525	-1.20914896051235	0.0432841118799368	0.211659782873181
Merged-chr17-51099886-3	chr17	51099786	51099986	+	786.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 2 of 21)	intron (NM_028162, intron 2 of 21)	59492.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	3.75799690914388	3.37747089571663	3.18920769525132	3.23865954308357	3.7498845483923	3.43936381308755	3.78626657478487	3.66069781199941	0.864360011868483	0.0999382010547164	0.346763245240989
Merged-chr2-24975957-4	chr2	24975853	24976053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146251)	promoter-TSS (NM_146251)	-80.0	NM_146251	241274.0	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	8.13331644372847	8.10562779508598	8.02739017017445	7.89260256941486	7.97916346924871	7.82268635961543	7.98901212844633	7.80692619859574	-0.169865041688515	0.302740218105038	0.615221435062481
Merged-chr11-69838984-2	chr11	69838884	69839084	+	988.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026982, intron 2 of 3)	intron (NM_026982, intron 2 of 3)	459.0	NM_026982	69186.0	Mm.248772	NM_026982	ENSMUSG00000070394	Tmem256	1810027O10Rik|3110009M16Rik	transmembrane protein 256	protein-coding	3.64092402735486	3.95962649130021	3.94184114827439	3.16693324967996	3.80471697407226	3.57902923865489	3.6814193455292	3.9830982493109	0.174764366576693	0.747112786007218	0.900416857483833
Merged-chr10-37343075-3	chr10	37342955	37343155	+	558.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-204129.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	3.19792690798666	3.15233166557881	3.49149117139361	2.8979021538692	3.40527527153849	3.55575664571076	3.7124692309693	3.43584698240382	1.21470451562157	0.0290329934745414	0.163828122791834
Merged-chr11-83942126-4	chr11	83942093	83942293	+	984.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030096, exon 1 of 15)	exon (NM_030096, exon 1 of 15)	103.0	NM_030096	78394.0	Mm.280544	NM_030096	ENSMUSG00000020677	Ddx52	2700029C06Rik|ROK1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52	protein-coding	5.53531565799765	5.43992375228758	5.09891867601076	5.34048674365595	5.51087700472878	5.57140108332396	5.58474570546254	5.58412251956882	0.344774606953577	0.212245825787217	0.517112635074733
Merged-chr13-3637051-4	chr13	3636946	3637146	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267724, intron 1 of 3)	intron (NM_001267724, intron 1 of 3)	3014.0	NM_001267724	142688.0	Mm.253061	NM_178283	ENSMUSG00000033781	Asb13	2210015B19Rik|6430573K02Rik|Asb-13|C85285	ankyrin repeat and SOCS box-containing 13	protein-coding	5.22246986098059	4.65085831159948	4.86350251070955	4.91659876280512	5.21302450069389	4.74919554223014	5.07888831105317	5.13141702029397	0.268311670696262	0.426237143400606	0.717695305043686
Merged-chr10-8535649-4	chr10	8535560	8535760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16835.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	5.77091978967857	5.99068212383293	5.39974261000489	5.89970442071637	5.52801596061854	5.19053997724417	5.51765113691151	5.51380263652763	-0.581105952302196	0.043969616774606	0.213734436413282
Merged-chr2-160068972-4	chr2	160068874	160069074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52321.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	6.65672931076205	6.72217286211428	6.61360241511518	6.65007761832184	6.16506895166731	6.40734031413132	6.07003091874033	6.37863052752149	-0.598441866824798	0.00578708382470002	0.0528982714213847
Merged-chr8-13671834-4	chr8	13671724	13671924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	5763.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	6.08204540361765	6.27601136612653	6.92573220596239	7.05587686108165	6.2547235163877	6.0397488847751	6.50850066235446	6.65946279369575	-0.400063221462835	0.182281029076425	0.47878218634963
Merged-chr12-69241995-4	chr12	69241916	69242116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178253, intron 1 of 12)	CpG	184.0	NM_178253	271005.0	Mm.180969	NM_178253	ENSMUSG00000051890	Klhdc1	-	kelch domain containing 1	protein-coding	5.74695842275508	6.03899115480499	6.04774888823275	5.81021588917042	6.12558355197833	5.84433081219072	6.20531557215153	5.84347763102287	0.175031002215191	0.489076269498618	0.761571656414145
Merged-chr5-76525305-4	chr5	76525206	76525406	+	916.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-4001.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	4.37357989702653	4.34727975922573	4.23250430615113	4.63657393263757	4.79817006139693	4.14160332145358	4.63221123067763	4.57752327276485	0.331449620751073	0.410477700284759	0.705863751236677
Merged-chr10-71349445-4	chr10	71349305	71349505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	intron (NM_027184, intron 1 of 5)	1642.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	5.49979623891587	5.80056663693855	6.27784634047256	6.04550557221974	4.94965174305001	5.55847641492255	5.25363941796948	5.66003140400842	-0.954922856905242	0.00324921616168927	0.0339811867723891
Merged-chr2-91196119-4	chr2	91196013	91196213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177730)	promoter-TSS (NM_001177730)	-997.0	NM_001177730	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	5.6490586841423	6.34538141254013	5.67662311942854	5.84414834589745	5.84282347671398	5.49576799353572	5.74833141264364	5.67261312351504	-0.345020037962266	0.23485745609489	0.544702472055334
Merged-chr2-165055190-4	chr2	165055091	165055291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170704)	promoter-TSS (NM_170704)	-445.0	NM_170704	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	6.67195611278749	7.66053814047856	6.3754774166408	5.98516640346879	7.10245165386975	7.23672713748075	6.85276662717996	6.4286668338363	0.132992823734994	0.809167685796149	0.926362488588753
Merged-chr4-126017865-4	chr4	126017764	126017964	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6795.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	5.57691104345576	5.34091033561532	5.3866332730387	5.61982831123966	5.35462166923713	5.37325443873759	5.23709550247061	5.59901616873601	-0.175528080377085	0.536646796261772	0.790562048448667
Merged-chr13-108268020-4	chr13	108267915	108268115	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029001, intron 3 of 7)	intron (NM_029001, intron 3 of 7)	-48322.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	5.08690580819799	4.94280719019722	4.84075823278823	5.02118048335459	4.80760614993726	5.3512579893539	4.99754247306603	5.01852949831181	0.132578476278451	0.683580048595272	0.870394242877558
Merged-chr6-34995485-4	chr6	34995379	34995579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR52|LTR|ERVL	-17480.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	6.13292403101268	6.20052017971077	5.9408225758175	6.47463566722502	5.99625526459497	5.80706421252663	5.97791012037982	6.08921084787671	-0.384110998666296	0.128877350102546	0.399380073270456
Merged-chr6-83914765-2	chr6	83914660	83914860	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_008717, intron 1 of 26)	CpG	407.0	NM_001355284	18139.0	Mm.132392	NM_008717	ENSMUSG00000030016	Zfp638	AI323587|Np220|Zfml|Znf638|mNP220	zinc finger protein 638	protein-coding	5.29274978203739	5.37218025657465	6.12056663648534	5.18315667456799	4.77701226407274	4.86441890205226	5.20441295571772	5.5900351266196	-0.707519041897603	0.0666784538858734	0.275280184974339
Merged-chr11-94979128-4	chr11	94979038	94979238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2811.0	NM_009161	20391.0	Mm.18709	NM_009161	ENSMUSG00000001508	Sgca	50DAG|Asg	sarcoglycan, alpha (dystrophin-associated glycoprotein)	protein-coding	6.8651280402952	6.46822765892904	6.39892609609541	6.4638351498704	6.83913671603011	6.57591378266259	6.32932527049894	6.53253083704758	0.0513423418545654	0.827599860676195	0.933903677361406
Merged-chr17-12769682-4	chr17	12769534	12769734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010515)	promoter-TSS (NM_010515)	72.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	5.38122637610305	5.35455407310731	5.2920435992962	5.05428875356913	5.42096114902779	5.61218336671192	5.10133308745695	5.68523356452517	0.370394737884572	0.22173792335763	0.529830256279916
Merged-chr1-55051575-3	chr1	55051479	55051679	+	882.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-1191.0	NM_026424	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	3.13563121492912	3.34547431620615	3.3435286061593	3.45223836231353	3.74450520153609	3.64149067914442	3.80564870361788	3.94718454739472	1.43854963695941	0.00530084773092032	0.0496786096957443
Merged-chr12-100087516-4	chr12	100087426	100087626	+	981.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24805.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	4.75676836716365	4.55168153881289	5.25432929423547	5.61757891050539	4.84533228826583	4.67268998779132	4.92153131011589	4.79422692057546	-0.624967586875519	0.118668857216216	0.381101362019176
Merged-chr18-49458430-4	chr18	49458338	49458538	+	900.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64851.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	4.18619904708975	4.39040017698318	4.98804550496623	5.18289326935847	4.21477441582753	4.36861823948931	4.53180101208264	4.01642714635097	-1.0472737053229	0.0221955764372024	0.137307399202471
Merged-chr11-121342907-3	chr11	121342809	121343009	+	758.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025793, intron 2 of 9)	intron (NM_025793, intron 2 of 9)	11538.0	NM_025793	66840.0	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	4.16025863876335	3.74967547242316	3.70187057911136	3.96326470520905	3.60740624978627	3.92833731330639	3.68743643610653	3.64352426073996	-0.561407859431829	0.235251315470298	0.545207351410163
Merged-chr11-102296213-6	chr11	102296098	102296298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098836, intron 1 of 12)	CpG	431.0	NM_001098836	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	4.82331614705994	5.16291507951477	4.61820257207658	4.62129536683011	4.79762621761637	5.20629689502562	4.76288304634667	5.23852021403053	0.382864882187609	0.287403001836155	0.599175744470028
Merged-chr2-119106766-4	chr2	119106676	119106876	+	597.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6041.0	NM_011234	19361.0	Mm.330492	NM_011234	ENSMUSG00000027323	Rad51	AV304093|Rad51a|Reca	RAD51 recombinase	protein-coding	3.67646794680889	3.43974677410368	3.62426965943987	3.6640764333624	3.24032679471317	3.89748139612325	3.93560615334825	3.45028144809648	0.167567820078048	0.753621798920409	0.902798885097597
Merged-chr10-84440735-4	chr10	84440656	84440856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004363)	promoter-TSS (NM_001004363)	-285.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	7.01455240483151	6.64143571847967	6.52417069334415	6.91056294448857	6.52924981027865	6.71840647241846	6.666200488802	6.8096981888801	-0.163250473824638	0.456543786149288	0.739917647952291
Merged-chr5-97113678-4	chr5	97113552	97113752	+	863.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-2056.0	NM_001359913	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	4.23280720095067	4.4555430684259	4.23346643003624	3.8444619459371	4.27713196599831	3.88607513972454	4.07742588997632	4.31533679876146	-0.11250531418149	0.799925321838333	0.922773357586028
Merged-chr2-156190384-6	chr2	156190250	156190450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-6297.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	5.03596151001568	4.64875929507817	4.74796995892318	4.46675261889422	5.15453075563915	5.17657753306901	5.10454443382728	4.93264197058569	0.754243559181247	0.0249815394470328	0.148390302620408
Merged-chr17-24167114-4	chr17	24167018	24167218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361533, intron 1 of 2)	intron (NM_001361533, intron 1 of 2)	1691.0	NM_001361535	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	7.3356518230541	7.07270428177616	7.16649969081605	7.27664759352828	7.31174800162981	7.34334439265413	6.97331774451071	7.16147767900609	-0.0141177314917703	0.941469944924015	0.978922922650201
Merged-chr12-84189267-4	chr12	84189173	84189373	+	930.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	4742.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	4.94380066037805	5.08621735656237	4.68790520579777	4.32581158253032	5.19337467544466	4.86374171225193	4.62520745766474	4.64365796075418	0.162427437007817	0.680838570443776	0.868956507598538
Merged-chr7-27592577-3	chr7	27592535	27592735	+	737.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110208, intron 1 of 13)	intron (NM_001110208, intron 1 of 13)	1083.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	3.35282071128286	3.43888055282581	3.52332348726894	3.32983486731275	3.71293237711337	3.63928830012498	3.34136707984664	3.46718652840933	0.487668136564359	0.331775067234505	0.642849806093321
Merged-chr11-121703369-4	chr11	121703284	121703484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 1 of 3)	CpG	957.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	7.38414321479842	7.50428350035924	7.18966611984136	7.35617357345892	7.54909074594727	7.44690019043222	7.73426330600558	7.53178173689636	0.273047137892939	0.128694977807118	0.399162483129236
Merged-chr16-44050469-3	chr16	44050433	44050633	+	707.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8525.0	NM_001359085	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	3.09348849013762	3.04472042751187	3.31874374326457	2.99169405886966	2.99198552868857	3.14118438968422	3.25268727251532	3.20945452130468	0.152502893129834	0.787505657780379	0.917592083799594
Merged-chr1-135147843-1	chr1	135147743	135147943	+	1000.0	f0_c57.idr	intron (NM_026823, intron 1 of 6)	intron (NM_026823, intron 1 of 6)	1009.0	NM_026823	68724.0	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	6.56690276682737	6.67216355911102	6.46736470344584	6.49672986272125	6.8289236504999	6.45743013777138	6.61233518830591	6.72921068292029	0.176713993094668	0.403760846908	0.700975470671591
Merged-chr12-85980182-4	chr12	85980076	85980276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	98865.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	6.245067697812	6.27940942314581	6.04085930626798	6.15425466543899	6.17870685226633	6.17280357064441	6.55787609525021	6.16359932475199	0.144136752916663	0.539515051120101	0.792267330348392
Merged-chr17-34206080-4	chr17	34205973	34206173	+	855.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011530, intron 3 of 11)	B2_Mm2|SINE|B2	1594.0	NM_011530	21355.0	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	4.16963320777874	4.12905983789345	4.12027145524115	3.79510876318372	4.55773429012213	4.56646634119691	4.52791572177563	4.43260422546019	1.17843213066998	0.0024968086338521	0.0277273624577498
Merged-chr8-108320641-4	chr8	108320553	108320753	+	888.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	264024.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	3.5421359737875	3.82691314665771	3.76391237349478	3.55830626266189	3.97664396036218	3.83084771568796	3.89071838964167	3.54080147173342	0.452962105482804	0.337365395807399	0.647065507846796
Merged-chr2-122610283-3	chr2	122610170	122610370	+	883.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025961, intron 1 of 8)	intron (NM_025961, intron 1 of 8)	1007.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	4.36361181167119	4.2505776845857	4.36430660661668	4.53818225303309	3.95262680087515	4.05621387051397	4.07624224323887	4.32019867535428	-0.72779698771966	0.0733161832818736	0.291605532511203
Merged-chr7-47050572-4	chr7	47050482	47050682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026436)	promoter-TSS (NM_026436)	-58.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	8.18696355011868	8.35525893974563	8.18829915542178	8.23447018296558	8.2366315672253	8.46000531314377	8.57364807632838	8.07469517856307	0.133050857339981	0.443057648303676	0.72973899362753
Merged-chr13-70611239-3	chr13	70611150	70611350	+	751.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144837, intron 10 of 18)	intron (NM_144837, intron 10 of 18)	26384.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	3.47567924238114	3.57352649892717	3.20125523864059	3.34550649958949	2.93620390879078	3.31366503157084	3.12803659322072	3.1996622753936	-0.998767862009509	0.0808906678282382	0.308560375187203
Merged-chr6-127420072-3	chr6	127419978	127420178	+	763.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-26762.0	NM_001346513	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	2.59001561458248	2.54462699911261	2.80905298672432	2.74391739577365	2.12920911956874	2.18925324411934	2.24628863765291	2.17170069748061	-4.16362522879555	0.000151346567586975	0.00287655469540009
Merged-chr4-134087587-3	chr4	134087487	134087687	+	992.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162970, exon 15 of 20)	exon (NM_001162970, exon 15 of 20)	7486.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	3.68685672796886	3.60058044346165	3.44074472819257	3.37671171762826	4.09495966054391	3.80856893081792	4.0959671771684	4.19115590038419	1.57914199563486	0.000548776767072393	0.00831447030724689
Merged-chr5-125329384-4	chr5	125329289	125329489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	11705.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	6.76848985114186	6.30008697689572	6.93150438212345	6.75999424467276	6.09354017748005	6.13798680365886	6.17702480263315	6.49929464012797	-0.701240964654292	0.00425877574622503	0.0421138370159143
Merged-chr18-73542196-4	chr18	73542101	73542301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30504.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	6.88715814184311	7.18587107277178	6.67727707814356	6.64011667968656	6.83511232453044	6.80751354815798	6.77349522792468	6.19457625211943	-0.256211734841963	0.302123904657571	0.614407514345911
Merged-chr13-5714382-4	chr13	5714279	5714479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143713.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	6.56825292339992	6.55218614879716	7.15564186581627	7.48651851882865	6.9766091397858	6.73067542331154	6.95766033820785	7.01265702477506	-0.12903422560413	0.629981871056795	0.842536537521168
Merged-chr7-90070019-4	chr7	90069938	90070138	+	869.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40879.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	4.38552574811595	4.42789408201187	4.55439082857476	4.25268193063881	4.79540162506341	4.60386274074397	4.64499105216942	4.24148353115254	0.445150233908141	0.239825834265226	0.550343769977579
Merged-chr3-61407079-4	chr3	61407017	61407217	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	42610.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	4.94617647270816	4.69472812258188	5.24775899942253	5.38706473488894	5.20306175499226	5.00800504000431	5.19178674242736	5.46177442401775	0.212683640189079	0.534083956400701	0.789066961676578
Merged-chr6-72868957-3	chr6	72868868	72869068	+	809.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019715, intron 1 of 6)	intron (NM_019715, intron 1 of 6)	30324.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	3.78420114719062	3.68556340219196	3.88198095517691	3.79352535814645	3.75913754943193	3.61937671350909	3.76917850443812	3.87963477167393	-0.0769036626463446	0.864837367173393	0.949284607738754
Merged-chr5-72950436-3	chr5	72950318	72950518	+	563.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153567, intron 3 of 8)	Lx8|LINE|L1	36056.0	NM_153567	75991.0	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	3.06599135947278	3.03874924764782	3.01111118425031	2.85845056301016	2.51848850470583	2.72430975973522	2.94193462928429	2.82790976656232	-1.10322153638304	0.0970004276837027	0.341195684602432
Merged-chr4-40242137-4	chr4	40242083	40242283	+	883.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2358.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	4.44890921926762	3.95248508689071	3.85807997229601	3.78142280819611	4.44760778629505	4.09281653301352	4.27497811104039	4.16244051592938	0.592347313619708	0.182653055980835	0.479266482532527
Merged-chr2-31245815-3	chr2	31245714	31245914	+	816.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019681)	promoter-TSS (NM_019681)	-109.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	3.98123880051848	3.86011052262036	3.93586494174435	4.11045755584851	3.7257743292448	3.90648208500084	3.60588161480287	3.67538961802468	-0.734329509558004	0.106376263249364	0.35951550457369
Merged-chr10-80165872-4	chr10	80165730	80165930	+	939.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-2009.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	3.72132942447503	3.59330070887962	4.02592559394506	4.16307324079321	4.04171765827967	3.84061515665648	3.91572441441162	4.0234466527268	0.136074765069013	0.772241029417868	0.910810383351782
Merged-chr4-134287793-3	chr4	134287712	134287912	+	838.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163794)	promoter-TSS (NM_001163794)	34.0	NM_146156	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	4.86552777309663	4.14482658856995	4.32261101195757	4.22974295079262	4.33265993102013	4.49690406288412	4.25777240026745	4.40730457773237	-0.0872963797350501	0.833185521231188	0.936237948428556
Merged-chr8-71759015-1	chr8	71758915	71759115	+	728.0	f1_c57bl6.idr	Intergenic	Intergenic	-33334.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	2.79917675100816	2.71855124053036	2.72856016774081	2.64402721303997	3.06733028860987	3.16331462318747	3.09350840976739	3.15832021431747	1.78867758502707	0.00248202635644587	0.0276130281377713
Merged-chr17-32608275-4	chr17	32608159	32608359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13060.0	NM_001100187	677156.0	Mm.484117	NM_001100187	ENSMUSG00000062464	Cyp4f37	Gm9705	cytochrome P450, family 4, subfamily f, polypeptide 37	protein-coding	6.68160861063783	6.17398412084697	6.41198199268355	6.73852508935815	6.40606066400671	6.31339919174281	6.5752807465558	6.61941028351719	-0.0698535709719724	0.769701013289726	0.909839341090846
Merged-chr1-165587895-4	chr1	165587800	165588000	+	910.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46641.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	5.23947052500034	4.57319382114576	5.1847956575628	5.68125185862701	4.10700262976319	4.40727192897726	4.60047732614267	4.89545802448762	-1.43964675734977	0.000837738612691534	0.0116714419089393
Merged-chr10-67535557-4	chr10	67535440	67535640	+	865.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2329.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	3.8206679239936	3.53565071714615	3.86750812396552	3.7649565534441	3.77924254186355	3.42136657120781	3.36465776950124	3.90964013969622	-0.324405053792863	0.525918844933507	0.783398169269435
Merged-chr12-56336065-4	chr12	56335940	56336140	+	932.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145442, intron 6 of 8)	intron (NM_145442, intron 6 of 8)	9854.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	4.56941089416952	4.14436092169254	4.31787678001997	4.42074213089483	4.69390365702684	4.29740918679014	4.58585305391154	4.56714868773346	0.406910537354287	0.283475676614155	0.595575878441482
Merged-chr2-152788961-4	chr2	152788882	152789082	+	990.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	34809.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	5.69787846531221	5.10959054628687	5.49901421043708	5.56573282298	5.38200480184914	5.7504516906401	5.38795130660044	5.0836465078373	-0.118167706689447	0.705760045917088	0.881821802733794
Merged-chr7-27581065-2	chr7	27580998	27581198	+	814.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175107, exon 10 of 10)	3' UTR (NM_175107, exon 10 of 10)	-10454.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	3.23034933160813	3.42511963436851	3.23072169022123	3.21457586745178	3.72356153428681	3.52369972600681	3.39586667556269	3.40727362148642	0.865499498648929	0.0926705908150095	0.332990054198675
Merged-chr19-47918183-3	chr19	47918092	47918292	+	802.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001738, intron 1 of 1)	intron (NM_001001738, intron 1 of 1)	1107.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	3.41156373782291	3.23978505673997	3.6640138681658	3.77951166220472	3.10281141521056	3.40884911261071	3.2223260822227	3.35331309123322	-0.985640389832615	0.0786889755408829	0.303544471603322
Merged-chr7-44351458-4	chr7	44351346	44351546	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034115, intron 23 of 24)	intron (NM_001034115, intron 23 of 24)	23584.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	4.96790634614108	5.53547089517842	5.04376481936368	5.12063243332288	5.59474790822052	5.35704662562126	5.419562454704	5.0763002782717	0.352832418119266	0.269906990266448	0.581714699333117
Merged-chr3-37502751-4	chr3	37502658	37502858	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021343, intron 14 of 15)	intron (NM_021343, intron 14 of 15)	82808.0	NM_021343	57815.0	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	3.99510853184965	3.75050108271978	3.66624046159008	4.23577686649809	4.26456991521864	4.06824983173739	4.11507581472716	3.99333050516391	0.439908964353315	0.341664366971803	0.650649543213365
Merged-chr7-19239611-4	chr7	19239499	19239699	+	943.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207525, intron 1 of 1)	intron (NM_207525, intron 1 of 1)	11210.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	4.80545575724971	5.04232017982591	4.64854546648062	4.27974963786278	4.95538865112623	5.11814525947726	4.7459467639707	4.80303467942881	0.416557536502311	0.266957967112334	0.578582337893211
Merged-chr9-44182489-4	chr9	44182372	44182572	+	830.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	B3|SINE|B2	47814.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	4.21699215397745	3.8490353507772	3.82688948865448	3.70624430131051	3.94624994842994	3.59609608948139	3.86032426115942	3.66254313891717	-0.354168932061788	0.460210179165104	0.742490742225721
Merged-chr5-45520312-4	chr5	45520208	45520408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025895)	promoter-TSS (NM_025895)	79.0	NM_025895	66999.0	Mm.283045	NM_025895	ENSMUSG00000015804	Med28	1500003D12Rik|AI451633|AU045690|Eg1|FKSG20|magicin	mediator complex subunit 28	protein-coding	6.96644537386669	7.16313089811185	6.92734484269204	7.26891892048838	7.18099865040851	7.33992479835485	7.16071501806955	7.21356962644041	0.163222668804002	0.397208984223039	0.695630734730866
Merged-chr17-74529364-4	chr17	74529252	74529452	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007566, intron 1 of 72)	intron (NM_007566, intron 1 of 72)	1057.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	4.70606712059497	4.61009558615097	5.23057184392509	4.63918011821225	4.70564254181243	4.66771552930069	5.0027733232515	5.08555768924814	0.130336906472413	0.721948151972912	0.889042534026745
Merged-chr3-115924545-3	chr3	115924446	115924646	+	954.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027193, intron 5 of 7)	intron (NM_027193, intron 5 of 7)	36363.0	NM_027193	69740.0	Mm.5915	NM_027193	ENSMUSG00000033554	Dph5	2410012M04Rik|AU045680|C80186	diphthamide biosynthesis 5	protein-coding	4.44245078310718	3.86258081636146	4.57389239179465	4.88881592447066	3.15945688124688	3.27764306133641	3.38149500881057	3.23527548353647	-4.6661834312354	2.1634991146354e-09	1.30948727449518e-07
Merged-chr4-102720192-4	chr4	102720106	102720306	+	949.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-39929.0	NM_001285860	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	5.07804708598166	5.36130794509614	5.34522008400724	5.37640279120162	4.74647099268491	4.64376135348325	4.98695509597296	4.89924802667548	-0.930249530772477	0.00352862366232994	0.0362953618007201
Merged-chr13-37749263-4	chr13	37749174	37749374	+	825.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76764.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.05719654061527	4.23553093324445	4.00866604939653	4.11835251001035	4.06299959110837	4.13123548509107	4.08750117434076	4.14831196600481	-0.0138923276710525	0.972536419062146	0.990115073860739
Merged-chr7-45522017-4	chr7	45521933	45522133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008654)	TTS (NM_008654)	4235.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	7.41464398971227	7.56722383054702	7.37626964057584	7.50847258750361	7.3613364481189	7.20928333708079	7.67940074989675	7.29875506365817	-0.0955226379255742	0.613422760583797	0.83329826063945
Merged-chr10-29338858-4	chr10	29338759	29338959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110195, intron 5 of 5)	intron (NM_001110195, intron 5 of 5)	18854.0	NM_001284279	68031.0	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	5.92667886288609	5.92185561982198	5.58305971451546	6.26074790784669	6.3651569545678	6.14929572821631	5.87420240176828	6.2669772672769	0.334653050323978	0.223918422853198	0.532092897361468
Merged-chr5-143059007-4	chr5	143058873	143059073	+	714.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	54047.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	3.87011533891126	3.28236112467466	3.62587437624741	3.33374387338546	3.76427906838936	3.9473885964758	3.61106016083002	3.51143483880612	0.557428690902405	0.283920893207148	0.595969718026818
Merged-chr4-120882330-4	chr4	120882229	120882429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 3 of 7)	intron (NM_182929, intron 3 of 7)	27530.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	5.89643547120419	6.40557579319517	5.89748359416572	5.26721128349062	6.30233455282839	6.71360022682293	6.18139549521037	5.56889614428317	0.504290779687169	0.151858212988525	0.435623090408666
Merged-chr15-84192192-4	chr15	84192095	84192295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178614)	promoter-TSS (NM_178614)	-38.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	7.98063999974355	7.76142511649416	7.7086222917284	7.64865248390201	7.95501325321585	7.68973902480183	7.87582598539743	7.82152334491504	0.0903732971710804	0.602576550365302	0.827756460571785
Merged-chr3-51340521-8	chr3	51340442	51340642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291059, exon 1 of 10)	5' UTR (NM_001291059, exon 1 of 10)	102.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	6.31234876557183	6.04614515318862	6.26007900355479	5.81319248317342	5.92188509414341	6.10622547616447	6.05359080887247	6.36009967677349	0.0143900267213689	0.955737456552918	0.984292813605202
Merged-chr10-84337903-4	chr10	84337789	84337989	+	746.408325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A|LTR|ERVK	102582.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	3.7876714709432	3.78042755761518	4.19648160193874	3.69335989922665	3.78203506701017	4.15546768236943	3.54291855919861	3.88856776563268	-0.0403395127112353	0.933684363430405	0.976099628478877
Merged-chr18-38211845-3	chr18	38211739	38211939	+	854.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2077.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	3.03674819158163	2.94103028682637	3.10140770870603	2.73291904078431	3.22721472072613	3.44787209144695	3.26376247481339	3.38075434830936	1.54035442112823	0.00696984109213349	0.0606875228072368
Merged-chr12-32123720-4	chr12	32123627	32123827	+	863.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62448.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	4.41821276480043	4.34810018836424	4.61817685212836	4.69398493464703	4.58097029981888	4.20070441663237	4.55929649354127	4.32693521742432	-0.231458914672617	0.547220742957053	0.796762026973831
Merged-chr16-56036102-4	chr16	56036011	56036211	+	741.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029092, intron 1 of 1)	intron (NM_029092, intron 1 of 1)	1663.0	NM_029092	52575.0	Mm.288742	NM_029092	ENSMUSG00000044763	Trmt10c	1300018J16Rik|D16Ertd454e|Rg9mtd1|Rnmtd1	tRNA methyltransferase 10C	protein-coding	3.89697679323947	4.24914844303508	3.89752917640766	3.82450118432754	3.59518723458359	4.22146805683619	4.12170079515696	4.34168902142502	0.312258265833501	0.511079099561232	0.775140082837974
Merged-chr18-60745602-4	chr18	60745511	60745711	+	875.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	1135.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	4.13606486147111	3.75669759333097	3.85390175436524	4.29576975492046	3.81389459553243	3.74261020345812	3.78524256225895	4.21568108939914	-0.375340217728611	0.431297246527115	0.721606532462533
Merged-chr19-38837332-4	chr19	38837206	38837406	+	893.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001362424, exon 1 of 11)	exon (NM_001362424, exon 1 of 11)	727.0	NM_001362424	209478.0	Mm.391153	NM_145952	ENSMUSG00000048720	Tbc1d12	BC033574	TBC1D12: TBC1 domain family, member 12	protein-coding	4.14300163479783	4.0644282422213	4.55534801606303	4.32171840828983	4.06329340121485	4.05696358592355	4.21856886745982	4.51670922822779	-0.148167265580423	0.724596800441003	0.890378684158929
Merged-chr18-52598454-4	chr18	52598337	52598537	+	752.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17478.0	NM_025749	66758.0	Mm.251599	NM_025749	ENSMUSG00000046886	Zfp474	4933409D10Rik|Znf474	zinc finger protein 474	protein-coding	3.94978660739798	4.29891301081517	4.00251252481241	3.55945054714257	4.39674152927491	4.27428258884137	4.08301462301704	4.23323750026477	0.73837454594758	0.103476402346168	0.353457473970529
Merged-chr16-31070941-4	chr16	31070761	31070961	+	882.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 1 of 3)	intron (NM_198626, intron 1 of 3)	10571.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	3.63779944958048	3.7004352663568	4.035691953185	3.61044392009366	3.63128026769263	4.07036598438113	3.83577604858078	3.84996451600226	0.294007357029461	0.532943731521791	0.788398805429988
Merged-chr4-132198636-2	chr4	132198536	132198736	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145393, intron 4 of 4)	RSINE1|SINE|B4	13620.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	2.90087198612625	2.7509087277424	2.62873888104258	2.77678601446072	3.03628926336493	3.12937560872199	2.89080860152024	2.9598183939426	1.04781749922181	0.0845194734250952	0.316357353360189
Merged-chr19-15815388-3	chr19	15815289	15815489	+	929.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109233.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	4.7000884493919	4.07531744339312	4.97947221508817	4.96150117866593	4.09600144085255	3.97683767717588	3.96006153368951	4.5891544207001	-1.2655348298599	0.00710912591081945	0.0616046351602408
Merged-chr19-24966425-4	chr19	24966354	24966554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4838.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	5.64168069570281	5.80430309607617	6.0316600392462	6.07131605812257	6.2311838450314	5.92869193848266	6.04177389342617	6.00626324161449	0.241352937857527	0.342721377753295	0.6516462545027
Merged-chr4-137890814-4	chr4	137890742	137890942	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	28605.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	5.08242705289375	5.22268878253995	5.24233036018321	5.25205919528329	6.30167937168986	6.46884310442547	6.48764517869077	6.44562086882789	1.94257949792908	1.54146473587856e-14	2.30989301968632e-12
Merged-chr15-39173049-4	chr15	39172950	39173150	+	875.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR1_Mm|LTR|ERVK	-25236.0	NM_001256382	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	5.45820863777049	5.57314404338794	5.72760453108725	4.47663128791244	3.5519047755969	4.60721144121079	4.62713106416888	3.86392921902622	-2.35943190103843	0.0147911328972999	0.103787268187787
Merged-chr5-123671196-4	chr5	123671101	123671301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	13160.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	5.44953475383586	5.63305637825449	5.5080219367929	5.6518749684117	5.55810880218416	5.43913350306541	5.42333455543964	5.96864750261689	0.0769174174196781	0.785871336487268	0.916693201681835
Merged-chr11-58323368-4	chr11	58323325	58323525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028331)	promoter-TSS (NR_028331)	-60.0	NR_028331	319475.0	Mm.72124	NM_178761	ENSMUSG00000049755	Zfp672	4930488P06Rik|4930511N19Rik|Znf672	zinc finger protein 672	protein-coding	7.86174063909474	7.60030198249667	7.56408087014467	7.73698284443415	7.96210532872166	8.22553209784285	8.04713102070281	7.90838698304017	0.442520641686505	0.010496050510604	0.0817662667499486
Merged-chr19-55723970-2	chr19	55723839	55724039	+	759.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-17871.0	NM_001331147	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	2.83330207276313	2.73280016952208	2.9995520110924	2.65001025942136	2.5804475798712	2.60316476433684	2.5658970049344	2.83214407548655	-0.7710193783665	0.251788059302134	0.563040416191876
Merged-chr7-55935309-4	chr7	55935191	55935391	+	893.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256131, intron 5 of 5)	intron (NM_001256131, intron 5 of 5)	27202.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	4.76064632344804	4.69451191313711	4.57928463633279	4.61293620214025	4.47675731575785	4.2387420624057	4.39244231409574	4.49549657467683	-0.565448265224266	0.119370520110387	0.382336219031837
Merged-chr17-69157548-4	chr17	69157421	69157621	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013813, intron 1 of 21)	CpG	777.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	4.80832090876188	5.12669253472242	5.39863954675398	5.23780393871916	4.9070035991866	4.81854455775896	4.70733784722303	5.15190549569791	-0.505260229455549	0.13413886966248	0.407802101554934
Merged-chr1-152870967-3	chr1	152870862	152871062	+	974.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005507, intron 1 of 21)	intron (NM_001005507, intron 1 of 21)	31683.0	NM_001359257	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	3.9332448952995	4.42369403225428	4.25731769658942	4.23379453938224	3.91314279482828	3.76051574870212	4.06489221813342	3.98299585114671	-0.774081173140184	0.0753774844335587	0.296467674557991
Merged-chr11-77239858-4	chr11	77239763	77239963	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 1 of 14)	intron (NM_177710, intron 1 of 14)	23438.0	NM_177710	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	4.28138689615082	4.2058001223737	4.10784254889819	4.11638484627666	4.28477690597506	3.91301188287292	3.77858314617008	4.19532973217926	-0.27395703965375	0.525935545517632	0.783400288670311
Merged-chr7-19279754-4	chr7	19279688	19279888	+	754.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177691, exon 1 of 5)	exon (NM_177691, exon 1 of 5)	261.0	NM_177691	232941.0	Mm.134068	NM_177691	ENSMUSG00000030402	Ppm1n	A930002H20|C79127	protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)	protein-coding	3.54236303253984	3.50178478865316	3.31027276447225	3.33900317587634	3.66076029658784	3.71228850833697	3.36040361898692	3.59293333782475	0.554311895759352	0.265609743309927	0.577312688379665
Merged-chr2-153348593-4	chr2	153348495	153348695	+	769.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039939, intron 1 of 11)	intron (NM_001039939, intron 1 of 11)	2456.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	3.90227121056232	3.88725341737172	3.48613668704559	3.35271509873801	3.81820322878887	3.9799864118232	3.34675803670055	3.5441986873757	0.0637852129999561	0.906006486867184	0.96512422707193
Merged-chr1-143903474-2	chr1	143903374	143903574	+	659.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100675.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	2.915515096688	2.96882629155896	2.91587068991066	3.02076345220072	2.82878610259025	3.13887178987024	2.71400947279485	2.72019072084007	-0.445031806732287	0.479115082640253	0.75492390461882
Merged-chr1-171330288-2	chr1	171330150	171330350	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357553, intron 1 of 4)	intron (NM_001357553, intron 1 of 4)	681.0	NM_001357553	21945.0	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	3.66824632323055	3.94389598165777	3.249901922294	3.46096999880693	3.57007958506871	3.73447507852663	3.6534852347337	3.56003699559022	0.0784724499205553	0.879858195272343	0.955009601536912
Merged-chr2-75638341-4	chr2	75638242	75638442	+	954.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6_Mm|LTR|ERV1	-20917.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	5.48395371104397	5.40439139235813	5.29635569026359	4.64516689384568	6.2533857748334	5.97007461907731	5.67051137670845	6.03961622182805	1.31253415670488	4.88788864775016e-05	0.00110977679763384
Merged-chr1-144239328-2	chr1	144239204	144239404	+	849.333374	f0_balb.idr|f0_c57.idr	Intergenic	Lx8b|LINE|L1	9800.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	4.36756545062481	4.29729845412353	3.51751157672321	3.76806105283873	3.92182711489146	4.25333026201486	3.91945501189663	3.93370608781233	-0.048627542694456	0.922851291145208	0.971413012934631
Merged-chr9-123928246-4	chr9	123928171	123928371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40421.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	7.14137739199131	7.17635068574126	6.83599901583569	7.199781105878	7.22484133230978	7.02779703519848	6.92474126707709	7.10315017735964	-0.0322976257009647	0.870524927428399	0.951405771688593
Merged-chr1-79581557-3	chr1	79581453	79581653	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90419.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	4.54691161756642	4.64813465529122	4.68256993099028	4.98158986616765	3.56779404311423	3.57395752859916	3.51341776475544	3.6664222950374	-3.42420532699212	1.29428329673893e-10	9.73845568483935e-09
Merged-chr19-5072076-4	chr19	5071951	5072151	+	939.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3973.0	NM_054042	70445.0	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	4.87944510306515	4.86801563266027	5.21484771932201	4.6732697943383	4.87547421895512	4.65323107109141	4.50017906448103	4.7678954903254	-0.404155089000247	0.259645087146135	0.571503421917705
Merged-chr5-142723743-2	chr5	142723643	142723843	+	998.1666869999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001122730)	TTS (NM_001122730)	21642.0	NM_146257	243328.0	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	4.06511129969825	3.37756805523647	3.37731845625388	3.36427449690299	3.5070365268416	3.61920659863825	3.59918081821803	3.90140602961269	0.269952308461225	0.617684349674529	0.835668216923081
Merged-chr1-36987321-4	chr1	36987210	36987410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M7|LINE|L1	-47783.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	6.14230008235563	6.63126752964655	6.01381753837083	6.02129204942478	6.3207244973267	6.27817018233415	6.40218472304799	5.89058903637964	0.0213272197390225	0.936579448045112	0.977053317827757
Merged-chr9-30940523-2	chr9	30940423	30940623	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2039.0	NM_013906	30806.0	Mm.100582	NM_013906	ENSMUSG00000031994	Adamts8	METH-2|METH2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 8	protein-coding	3.26543982697417	3.10120444960985	3.32302441712523	3.16121039500162	3.32118345333437	3.54571033110572	3.36399039881985	3.14198331674313	0.506073970181215	0.344132752521537	0.652626360582167
Merged-chr7-139388439-2	chr7	139388369	139388569	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001127363)	promoter-TSS (NM_001127363)	-640.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	7.583809036663	7.43208110839522	7.70443851639154	7.61471099563887	7.73685872819306	7.6601788506477	7.89578949209041	7.87336666933453	0.27223208140259	0.111847519848032	0.369609177637475
Merged-chr10-127636823-4	chr10	127636707	127636907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6179.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	6.76617486902763	6.91247859968713	6.7256029742179	6.45102605284801	6.6855951569382	6.20495428662838	6.2378130762708	6.63290222531859	-0.356768880456493	0.139921670045017	0.415958856554476
Merged-chr11-29147657-4	chr11	29147551	29147751	+	958.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027869, intron 17 of 27)	intron (NM_027869, intron 17 of 27)	16900.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	4.84841045139759	4.44961102794464	4.24615300675919	4.69138069392369	5.26218481887446	5.22766461052007	5.09149510967957	5.22878517159187	1.22206344606186	0.000397995914404411	0.0064179771616202
Merged-chr12-102704803-2	chr12	102704703	102704903	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172584)	promoter-TSS (NM_172584)	66.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	4.79588893081376	4.71423187028918	4.99998686240405	4.73757655329965	4.86456700594479	4.54562159474786	4.84473370146566	4.75624455641482	-0.0888017638181859	0.793112146106083	0.91984160503818
Merged-chr6-83017301-4	chr6	83017194	83017394	+	980.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 7 of 9)	L3|LINE|CR1	16177.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	4.98891477345716	4.96615560762837	4.68619912157464	4.80622227973859	4.95915365485496	5.05805244654945	5.15184300568338	4.95217474113111	0.328209870404928	0.30061526110872	0.612505973963948
Merged-chr14-119003481-4	chr14	119003397	119003597	+	698.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081252, intron 34 of 38)	B3|SINE|B2	65565.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	3.70420302290562	3.94451576855609	3.8102474605387	3.70953355197135	3.88320128698124	3.70700960321681	4.06374657516198	3.64663328869894	0.135421189982011	0.768052320712906	0.909266558474345
Merged-chr11-61728244-4	chr11	61728125	61728325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7426.0	NM_001033227	109342.0	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	6.45917652968839	6.00021163553399	6.35493268890217	6.57829961385512	6.43508626257263	6.49424073636454	6.61379127398554	6.48892737331238	0.191928536827479	0.413978795043547	0.708838812152508
Merged-chr17-22166073-3	chr17	22165922	22166122	+	756.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177596)	promoter-TSS (NM_177596)	-45.0	NM_177596	210853.0	Mm.441622	NM_177596	ENSMUSG00000063383	Zfp947	6720451E15|EG210853|Gm4769	zinc finger protein 947	protein-coding	3.30774166545216	3.56397428252112	3.4246365839059	3.21985617145553	3.32396829348175	3.53971901296422	3.51672642859106	3.42276933233672	0.246606207745543	0.632189945573476	0.843743440414307
Merged-chr2-75639768-3	chr2	75639666	75639866	+	902.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-19493.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	2.79452452843047	2.93202981274471	3.0943141526916	2.69336514899085	3.42956008720582	3.57003785867394	3.53216308569579	3.72524022934586	2.76012194960521	2.15820744270324e-06	6.99221882404069e-05
Merged-chr3-107994367-2	chr3	107994258	107994458	+	697.75	f0_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-7938.0	NM_008183	14863.0	Mm.440086	NM_008183	ENSMUSG00000040562	Gstm2	Gstb-2|Gstb2	glutathione S-transferase, mu 2	protein-coding	4.03630205124609	4.36010783395557	3.80145222581382	3.49265480169089	3.90123092722391	3.34766987399364	3.67913124594013	3.74657085749901	-0.782840172891429	0.154542190020895	0.439801241388062
Merged-chr8-14669607-4	chr8	14669542	14669742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-218894.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	6.93295778811928	7.06431305560211	7.03424372915923	7.26958652947177	6.65612008368775	6.77034051022599	7.03416870450278	6.80629122920605	-0.381202265184152	0.0637040552487983	0.268085074409023
Merged-chr19-45059829-2	chr19	45059729	45059929	+	745.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25A|LTR|ERVK	12253.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	2.91453519461732	3.26159562164321	2.84540852736625	2.28944565476235	3.05648430084736	3.3886074463593	3.14834536625561	2.97947944991747	1.02372371884122	0.202703472535991	0.505275565576953
Merged-chr4-133154226-1	chr4	133154126	133154326	+	594.5	f0_balb.idr	intron (NM_153423, intron 1 of 8)	CT-rich|Low_complexity|Low_complexity	23593.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	3.38576307751778	3.36803343755127	3.32759465152982	3.6244420089733	3.5658287631855	3.43963044410764	3.25550866274144	3.5454244991212	0.0554904956910379	0.915520320533828	0.968734794560308
Merged-chr13-93301156-4	chr13	93301064	93301264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2593.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	5.94558414526788	5.92317338236692	5.56877351843802	5.93851115754134	5.25131600662667	5.40436032406411	5.56779848655778	5.64481025292975	-0.662152727208354	0.0164770436695965	0.112177856657887
Merged-chr12-112593390-4	chr12	112593258	112593458	+	890.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 1 of 22)	intron (NM_198411, intron 1 of 22)	4574.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	3.53618906173721	3.76238618471271	3.64626189596272	3.87327665708799	3.54031813223351	3.65190111277489	3.52359154046694	3.64423251841451	-0.42222314565885	0.380552771097918	0.682955113054781
Merged-chr4-156197558-4	chr4	156197435	156197635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021604)	promoter-TSS (NM_021604)	-47.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	6.46435392306992	6.86527186657978	6.85308022923014	6.62578582924393	6.89759475463073	6.88846021457424	6.85753345068893	6.66164648019129	0.173550411572062	0.408300655671442	0.704287710409246
Merged-chr10-80693772-7	chr10	80693616	80693816	+	854.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	8104.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	3.61624937594171	3.24409056642367	3.12033532993846	3.27830555454834	3.30018789708252	3.29765144994266	3.29547850319231	3.5198676178907	0.112356279692203	0.835427090359206	0.937399345240525
Merged-chr1-36596256-4	chr1	36596142	36596342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 10 of 14)	intron (NM_001126046, intron 10 of 14)	-2910.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	5.07732761816707	5.00939364125524	5.24834280012278	5.76196438543253	5.20936266148722	5.48490819314591	5.50467555336916	5.39474022078666	0.108957317724344	0.746175121273788	0.899968661443807
Merged-chr4-57953979-3	chr4	57953868	57954068	+	798.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 1 of 4)	intron (NM_011660, intron 1 of 4)	2443.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	3.09507788149729	3.20017128846932	3.16937108236954	3.41649964861033	3.69275064749025	4.04740799920621	3.58417843466152	3.83595518138395	1.80018079427323	0.00139436530489269	0.0176123252139682
Merged-chr5-25082733-3	chr5	25082618	25082818	+	684.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 1 of 15)	intron (NM_145401, intron 1 of 15)	17924.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	4.17435024842714	3.58721537038049	3.97096878957151	3.62081425309835	3.51417454914235	3.61110476795995	3.90818275499518	3.72510092746008	-0.465257308411102	0.355134806729707	0.661783396816865
Merged-chr9-40784194-4	chr9	40784117	40784317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133733)	TTS (NM_133733)	-17056.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	6.1688499240041	6.18510540059514	6.26826488201339	6.28383622737072	6.4293301375872	6.28387643581219	6.56520928938876	6.10270605168918	0.19494085028536	0.394355618467772	0.693493392798635
Merged-chr3-84774455-1	chr3	84774355	84774555	+	622.0	f0_balb.idr	Intergenic	Intergenic	-41122.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	3.00305562986677	3.00700418747964	3.22498648743952	3.25083560957605	2.97791861512558	2.91349066172044	2.72942496869613	3.0019444155006	-0.936628653402281	0.1286527555091	0.399101088881334
Merged-chr18-14813192-3	chr18	14813117	14813317	+	674.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001100449, exon 7 of 15)	exon (NM_001100449, exon 7 of 15)	29972.0	NM_001100449	72504.0	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	3.08693197194457	2.87473764720581	3.03057804797853	3.36960413375551	2.80702923986555	2.95001330373009	2.96065526450492	2.70134310012665	-1.12132538568947	0.0822701917453453	0.3113851605185
Merged-chr9-77966421-1	chr9	77966321	77966521	+	909.0	f0_balb.idr	intron (NM_134255, intron 3 of 7)	intron (NM_134255, intron 3 of 7)	49056.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	3.50182426776474	3.3772367298769	3.8409361140726	3.71488494358783	3.36323993862012	3.56068697525742	3.31325501938679	3.50039319101276	-0.629441438151303	0.223670896388722	0.531783993154169
Merged-chr12-69228136-4	chr12	69228014	69228214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011133)	promoter-TSS (NM_011133)	76.0	NM_011133	18974.0	Mm.9199	NM_011133	ENSMUSG00000020974	Pole2	-	polymerase (DNA directed), epsilon 2 (p59 subunit)	protein-coding	6.20527994978032	6.03499654866669	5.95874678471041	5.76086196081657	5.39428077159965	5.85281276279312	5.59418203519961	5.47337178217085	-0.671532134369405	0.0147414659062697	0.103540833011878
Merged-chr13-51136604-4	chr13	51136503	51136703	+	981.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011462, intron 1 of 3)	intron (NM_011462, intron 1 of 3)	2285.0	NM_011462	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	5.11716547293884	4.79498585192492	4.62820088697022	5.54167446485812	4.93514829155177	5.05300963462233	5.06135035457227	4.91144341497348	-0.198996516379493	0.594163528896284	0.823361546253453
Merged-chr12-85391277-4	chr12	85391179	85391379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-16562.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	5.99232688353769	5.42433994535711	5.69077840143699	6.08718307996248	6.2862282405381	5.60922854594963	5.58114611607827	5.88122068243476	0.0835405685470151	0.78906543029977	0.91835324030065
Merged-chr8-41240096-3	chr8	41239999	41240199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_023662, intron 1 of 37)	CpG	340.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	6.75978703968146	6.79251898017347	7.04631502114709	6.69498834208422	6.78173849793193	6.6453957928437	7.044947868057	6.85413892131913	0.0255070263595299	0.903156719989034	0.964166361786269
Merged-chr4-9665797-4	chr4	9665684	9665884	+	855.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	3378.0	NM_023066	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	3.82979524963063	3.43990683741982	3.67393551275358	3.63457505244081	3.90376913722955	3.67566216729357	3.99443055815645	3.96720013186799	0.719538063820792	0.119006192190405	0.381719695098051
Merged-chr15-99030782-4	chr15	99030675	99030875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009448, intron 1 of 3)	intron (NM_009448, intron 1 of 3)	884.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	6.31132601460223	6.88745544074562	6.35068278291819	6.29270536862082	6.50984488071945	6.48988245996818	6.6746830823196	6.68988607383418	0.159428829399818	0.507314195046038	0.772710503440438
Merged-chr4_GL456216_random-16096-1	chr4_GL456216_random	15996	16196	+	1000.0	f0_c57.idr	5' UTR (NM_001033326, exon 1 of 7)	5' UTR (NM_001033326, exon 1 of 7)	215.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	4.29889525197589	4.09366539814334	4.29964267901131	2.51317812412398	7.88641713282626	8.26949427252319	7.94152247561848	7.80502255702382	11.5555876817264	7.22584830651876e-37	1.77354709175758e-33
Merged-chr17-21536927-4	chr17	21536832	21537032	+	645.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144515, intron 1 of 4)	RLTR19|LTR|ERVK	-1054.0	NR_131123	319870.0	Mm.488274	NR_131123	ENSMUSG00000097781	9330136K24Rik	-	RIKEN cDNA 9330136K24 gene	ncRNA	3.70760216593645	3.61011669379116	3.13968761013025	3.46702464089713	3.90581321138655	3.77475119091461	3.92405971532217	3.75632078297009	1.05809257220404	0.0350342171384258	0.185383843409777
Merged-chr17-6782791-4	chr17	6782684	6782884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009510)	promoter-TSS (NM_009510)	-4.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	6.88301655103093	7.19872263660062	6.78529503731675	6.83427545335595	7.0167526867424	7.08788959096691	7.26071392098609	6.59056892071736	0.106965040054607	0.636218193183453	0.846064411527807
Merged-chr2-160619463-4	chr2	160619366	160619566	+	906.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-26431.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	3.76771279664204	4.14462054851513	4.06539217250687	3.77095527120728	3.75631416755811	3.42747713235498	4.00243331269787	4.30294972603146	-0.0937420887521696	0.85453137294438	0.945206126144247
Merged-chr10-37400507-4	chr10	37400417	37400617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-261591.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	5.71286402318209	5.73061918202453	5.60447961885065	6.27724361683397	6.17378766598359	5.66457087585477	6.00516963919676	5.83444160605394	0.0925298283039491	0.754834331686234	0.90349862772789
Merged-chr12-76837569-6	chr12	76837459	76837659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145927)	promoter-TSS (NM_145927)	92.0	NM_145927	110606.0	Mm.151174	NM_145927	ENSMUSG00000033373	Fntb	2010013E13Rik|AA409500	farnesyltransferase, CAAX box, beta	protein-coding	6.37019402914111	6.70955804805861	6.94358764696159	6.65594519411118	6.75180735964878	6.91826803839696	6.75035787338134	7.02267074496607	0.251629616099318	0.247768909407096	0.558928540740629
Merged-chr13-37751719-4	chr13	37751608	37751808	+	960.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74330.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.18297156176158	5.17708693500681	5.24330121707364	5.38986459356373	4.96650496952573	4.89009740903726	4.73172012126374	5.01829199318037	-0.677225049567343	0.0296314858873233	0.165854016441538
Merged-chr1-155062222-4	chr1	155062116	155062316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21048.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	5.84343640477921	5.39113193886327	5.40481741817196	5.54242644601112	5.46507708823891	5.48746482744292	5.97691223990089	5.79589458821254	0.235056690962668	0.418606666659545	0.711971419979922
Merged-chr8-23028775-1	chr8	23028675	23028875	+	1000.0	f0_c57.idr	intron (NM_001110783, intron 1 of 43)	intron (NM_001110783, intron 1 of 43)	-6324.0	NM_001277281	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	4.33986568641138	3.99603437221907	4.05894499911476	4.38989756671736	4.2706917598187	4.33411941687642	4.64871075035295	4.10791463156153	0.327667839905617	0.433590677484033	0.72313200479477
Merged-chr8-57800560-4	chr8	57800458	57800658	+	991.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175032, intron 10 of 11)	intron (NM_175032, intron 10 of 11)	-147503.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	5.1448172767419	5.45369437529843	5.25144023577638	5.16509013928004	6.09181179066869	6.27844850817744	5.52395706546371	5.02738930049827	0.955906522080603	0.00732830159263153	0.0629445129795969
Merged-chr3-105066621-5	chr3	105066548	105066748	+	930.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029228)	promoter-TSS (NM_029228)	-196.0	NM_029228	75269.0	Mm.307994	NM_029228	ENSMUSG00000051788	4930564D02Rik	-	RIKEN cDNA 4930564D02 gene	protein-coding	3.66116620224383	3.57799890839862	3.81795133733409	3.54258984673577	3.82045529174691	3.93853285375757	3.80169013005464	3.81567735400774	0.598478738535646	0.185252377152705	0.483095034011812
Merged-chr4-46580921-3	chr4	46580793	46580993	+	885.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 1 of 11)	MMTV-int|LTR|ERVK	-14453.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	3.10589491833003	3.00871486880227	3.10624888326793	2.38516605690703	4.57521971797803	4.91541249935261	4.44015744086652	4.19464721725982	8.39886255613805	2.55344457821645e-18	6.83276810649883e-16
Merged-chr13-33076334-3	chr13	33076224	33076424	+	845.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-7779.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	3.52244469742074	3.57832359808371	3.52287251779914	3.34773995480818	4.42778944468097	4.06501517483362	4.34621920143533	4.566972632581	2.47189977082517	2.89469396072506e-08	1.39973791732642e-06
Merged-chr2-38368855-3	chr2	38368730	38368930	+	912.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290646, intron 4 of 4)	intron (NM_001290646, intron 4 of 4)	17522.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	2.8919530291031	2.9912606509445	2.95152997793558	3.2586549652335	2.73444885595812	2.65021557638333	2.61803048316405	2.89087541806027	-1.47586234689763	0.0286874528744691	0.162676547885319
Merged-chr7-128524223-4	chr7	128524081	128524281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013863, intron 1 of 3)	CpG	598.0	NM_013863	29810.0	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding	6.16875912750842	6.98456797068103	6.40715792481439	6.35609249781259	6.49587794211473	6.52911846502669	6.63293415731681	6.66222468426339	0.0898365197877937	0.722146792930114	0.889141811997836
Merged-chr2-90579258-4	chr2	90579174	90579374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	1373.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.74893221406166	7.18638001755852	6.80904097043708	6.55115134464089	6.91609370952842	7.34542902087692	7.24630276535759	6.71480892646868	0.329141245746114	0.175796823700532	0.470658653309832
Merged-chr19-41384632-3	chr19	41384564	41384764	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 1 of 16)	intron (NM_031376, intron 1 of 16)	406.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	4.65623646531754	5.16054011157996	4.81421777205834	4.44547881455104	4.79310513113501	4.98770601446388	4.67625139614752	4.98349360061662	0.158150288322622	0.667289547339408	0.862338897157766
Merged-chr7-101230455-4	chr7	101230343	101230543	+	832.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199012, intron 8 of 20)	intron (NM_199012, intron 8 of 20)	71645.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	4.70066705663272	4.45828979726189	4.40301754442479	4.77345068379672	4.43258889507413	3.88887993285964	4.29678653348478	4.01104215885188	-0.974074368383594	0.021961691493816	0.136387067621822
Merged-chr3-132103588-3	chr3	132103502	132103702	+	878.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	18310.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.91836704345129	3.8129350862409	4.15133870194115	4.43674443163531	3.49879730826505	3.9342436541123	4.04534438458472	3.9665400433437	-0.663245156511299	0.176675860273567	0.471862633987926
Merged-chr2-153084409-4	chr2	153084304	153084504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18449.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	8.29624655524517	8.67468996232321	8.58460613030057	8.5418341460182	8.45518930312967	8.36693973521918	8.63759522758339	8.36489238679084	-0.0906669967890459	0.580305919268202	0.815718435955212
Merged-chr14-40979183-4	chr14	40979087	40979287	+	916.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12291.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	4.11277142955506	4.83353800875053	4.51589854801231	4.86976591972885	4.41824110773768	4.5097455448612	5.01639200110931	4.82001656371423	0.171943771076911	0.680835486017472	0.868956507598538
Merged-chr3-146156390-4	chr3	146156287	146156487	+	997.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	6213.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	6.56210262490881	6.86829897963473	6.53124508247278	6.34439474215032	6.69299911453709	6.73913896113931	6.36154568748243	5.83239100442491	-0.185532446995928	0.501660023196978	0.769329486601838
Merged-chr1-152529748-2	chr1	152529648	152529848	+	891.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 14 of 17)	intron (NM_016846, intron 14 of 17)	95469.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	3.01652176579294	2.99659621649733	3.27733175339078	3.10634000777248	3.44470948825931	3.5069064122619	3.32200892046827	3.6779194001128	1.40215813422424	0.00945139857485556	0.0758274458024846
Merged-chr16-13903118-4	chr16	13903043	13903243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053181)	promoter-TSS (NM_053181)	2.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	8.02814626059473	7.86695976799682	7.71830773031686	8.12863338404534	8.32940641409596	8.35880659278075	8.34968549641222	7.97619074546077	0.399345251809796	0.028104020071788	0.160469761325991
Merged-chr6-50536687-4	chr6	50536595	50536795	+	997.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29779.0	NM_007808	13063.0	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	4.91644577749525	4.87614018756799	4.91726284897715	5.04262570682508	4.6664797450466	4.90582145942849	4.85880461816202	4.80560069033305	-0.292286442189433	0.366890162156379	0.671230012135118
Merged-chr6-52158830-3	chr6	52158763	52158963	+	852.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311118)	promoter-TSS (NM_001311118)	339.0	NR_131181	105242658.0	Mm.372521	NR_131181	ENSMUSG00000087658	Hotairm1	Gm15051|Hoxaas1	Hoxa transcript antisense RNA, myeloid-specific 1	ncRNA	3.41622627608543	3.57818798023057	3.87335903175244	3.35727864517352	3.92374280308843	3.72712083914361	3.80752927572735	4.34674700062052	1.20663878306216	0.0154864273840572	0.107280624308497
Merged-chr6-113857676-4	chr6	113857613	113857813	+	996.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009723, intron 3 of 21)	intron (NM_009723, intron 3 of 21)	33826.0	NM_001036684	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	4.46876066950343	4.89687518230288	4.68139351713226	4.98681240572604	4.54593993201274	4.55346206666863	4.65959108042911	4.89322728812295	-0.25993329506747	0.475624484254502	0.752388549309966
Merged-chr4-106881255-4	chr4	106881176	106881376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-30194.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	5.30158600796141	5.3995136344809	5.05136636653404	4.8105343804197	5.29785251027054	5.32516095164574	5.15751203062632	4.73606248893223	0.00721361128624574	0.983319254606795	0.993990503512979
Merged-chr8-26966674-4	chr8	26966549	26966749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10687.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	5.86263379264167	6.09986476936523	6.1435120706197	6.04854622371115	6.13141045287717	5.77599839658959	6.07308839730361	5.8595050546545	-0.103300264296464	0.674483425607431	0.866144208984521
Merged-chr13-35941125-4	chr13	35941035	35941235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26771.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	5.51778382550823	5.51176697957513	5.40592905839013	5.69676486404038	5.20220279240002	5.32406841623075	5.71142394057521	5.45977270182315	-0.204903136630308	0.479462015015293	0.755203070740729
Merged-chr5-25436270-4	chr5	25436175	25436375	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081383, intron 2 of 58)	PB1D9|SINE|Alu	62508.0	NM_001081383	231051.0	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	5.60841321058064	5.60679671338335	4.84003128136244	5.17927599749021	5.77143102071792	5.25784231585106	5.09043531226935	5.36804323522025	0.115551649911357	0.741347699057392	0.898139463026673
Merged-chr11-58643624-1	chr11	58643524	58643724	+	568.0	f1_balb.idr	intron (NM_001039047, intron 2 of 5)	intron (NM_001039047, intron 2 of 5)	3159.0	NM_001039047	216781.0	Mm.339507	NM_001039047	ENSMUSG00000037124	Trim58	Gm16|Gm1783	tripartite motif-containing 58	protein-coding	3.54329113595637	3.25763377956721	3.54384997269166	2.83452542281498	2.97664182363859	3.3893920532671	3.31836919187247	3.44008495906145	-0.113663636050063	0.854018772111756	0.945002054847848
Merged-chr10-6417871-3	chr10	6417764	6417964	+	946.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_1-LTR_MM|LTR|ERVK	-340729.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	5.46560689688965	5.01935544916175	5.6405162059917	4.91534643353029	3.25996200849349	3.64118576579674	3.79711155145656	3.66343677470856	-5.60150734961618	1.61718235350843e-12	1.6658382451574e-10
Merged-chr19-23142528-2	chr19	23142423	23142623	+	924.0	f0_balb.idr|f0_c57.idr	intron (NM_010638, intron 1 of 1)	CpG	1297.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	4.50299116151653	4.23592476750201	4.58037022545791	4.57685220394891	4.06687512574106	4.26776104106745	4.27033217536216	4.71761428846743	-0.319923283794943	0.432537685346272	0.722560959075835
Merged-chr13-9766239-3	chr13	9766141	9766341	+	646.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199141)	promoter-TSS (NM_001199141)	-920.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	3.53975048643824	3.41766818768979	3.75398429740914	3.53715491736189	3.63034827631875	3.65732000041068	4.0000833918133	3.70160768736128	0.585268916268002	0.222232362625702	0.530263059881829
Merged-chr14-25301788-3	chr14	25301724	25301924	+	748.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157361.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	2.66291225943182	2.67518916710193	2.66324718321021	2.87440974879024	2.31405638729304	2.41630924748983	2.52740728855467	2.59954416084046	-1.48342187619035	0.0434709228259024	0.212131565735569
Merged-chr7-83883161-4	chr7	83883090	83883290	+	898.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030705, exon 1 of 1)	exon (NM_030705, exon 1 of 1)	1151.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	4.25666977202337	4.43641707768297	4.50729596054318	3.69858322560837	4.12985479844176	4.38700347545343	4.04232530674919	4.74412155096104	0.23330639796458	0.621291206988978	0.837757076551181
Merged-chr13-111821935-3	chr13	111821830	111822030	+	935.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-12937.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	4.29803911682205	4.11919451660185	4.50140902740826	4.23602338379717	4.07654062916036	4.01385337376064	4.80402027593578	4.10739819104427	0.0036992970858006	0.993354728951356	0.997671773391494
Merged-chr18-39735020-2	chr18	39734920	39735120	+	675.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38477.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	3.48827304383534	3.04934244192246	3.48880195404526	3.05063568590996	3.13390468878292	3.32479878505379	3.42321358851816	3.32756657638927	0.0950433606743454	0.867117822115438	0.950263728970374
Merged-chr5-92093899-4	chr5	92093808	92094008	+	953.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-10164.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	4.50963379647177	4.24579149721005	4.2032063825849	4.54212618258152	4.60503843602731	4.32846122034995	4.23362481327952	4.65340418190724	0.184405604297449	0.639000598937758	0.847417204773176
Merged-chr1-191575651-4	chr1	191575560	191575760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306203)	promoter-TSS (NM_001306203)	24.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	8.32494533330528	8.28849806028546	8.10781013903119	7.95630085775604	8.48305502262905	8.25940628192432	8.40085740832538	8.07635921689047	0.186286633116756	0.295668974301266	0.60759944342148
Merged-chr5-53995388-4	chr5	53995259	53995459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3164.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	8.05892442569882	8.2613217224897	7.8266599471059	7.49909574348225	8.23848612865581	8.16483991486047	8.30304906161616	7.63731126645103	0.225821636566257	0.322931613424989	0.634428177846842
Merged-chr7-80079022-4	chr7	80078917	80079117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	-3760.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	8.06986806569494	8.01122635110297	7.829938609362	7.84000766661758	7.82757362397042	7.96879745900974	7.85128891481579	7.65387829329102	-0.141506965931097	0.405365566865632	0.702255804744808
Merged-chr5-9104134-4	chr5	9104040	9104240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	3403.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	5.65821948121471	5.29934020457449	5.55787619423456	5.71801006739946	5.49162630984762	5.33725698376802	5.6061131163858	5.3850401214377	-0.1978656840101	0.482387701806792	0.75723418393445
Merged-chr12-8501941-7	chr12	8501869	8502069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1960.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	4.36386857476988	4.88937045896524	4.88867111712326	4.7669514460097	4.66039615805248	4.44399478998117	4.57096342585296	4.98060528592459	-0.13998667639452	0.707174191650327	0.882405718173316
Merged-chr8-120536326-6	chr8	120536269	120536469	+	913.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_151732)	TTS (NR_151732)	512.0	NM_001145897	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	4.20023274026559	3.81670748195364	3.86337510013034	4.1643954265401	3.84152957793744	4.14290223009023	3.95257449530032	4.39361626407574	0.17069098451212	0.70515987503122	0.881587544161158
Merged-chr1-134801964-4	chr1	134801849	134802049	+	836.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081307, intron 18 of 23)	intron (NM_001081307, intron 18 of 23)	1772.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	4.3378925841113	3.96424648798156	3.93729530469051	4.44377715158039	4.11566895707073	4.00526915746338	3.9214520852223	3.88173303348505	-0.560179203437738	0.208710918610389	0.513022375312381
Merged-chr5-142816715-5	chr5	142816635	142816835	+	790.580017	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178242, intron 1 of 15)	CpG-11746	652.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	3.18053133007032	3.17909236211115	3.11855500786227	3.11421128156755	3.2680445397631	3.35281188180433	3.33830791632127	3.40224285732696	0.71839335162572	0.169641467914474	0.462321889663741
Merged-chr17-83271635-4	chr17	83271492	83271692	+	941.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	56309.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	3.99548727316841	4.06423756267264	3.68043315800603	4.12540972590973	3.86314805838494	3.91384695396826	3.88314080081429	3.99367588556114	-0.2122548889578	0.6319722453797	0.84364113460172
Merged-chr1-131981795-4	chr1	131981663	131981863	+	982.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145977, exon 5 of 5)	3' UTR (NM_145977, exon 5 of 5)	11154.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	4.90744192597007	5.31533568744026	5.0753205672881	4.97422318632539	4.8259222243768	4.76491546743577	4.65256323450571	4.86878612156942	-0.585429650342356	0.076813929024821	0.29957252758993
Merged-chr19-46524846-4	chr19	46524758	46524958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23210.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	6.75940862362274	6.59388086528358	7.25607083936979	6.99478174467853	6.39538273787993	6.26606935092467	6.62339564158656	6.60575105661555	-0.637788600677301	0.00720770061132195	0.0622248021200947
Merged-chr18-50125816-4	chr18	50125703	50125903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2398.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	5.60190112724451	5.59614051560612	5.54684194646119	5.74298002748062	5.67831889575045	5.85764200052064	5.86523225661618	5.99535162382701	0.347758895017848	0.177461311766899	0.472860356764725
Merged-chr17-28907587-2	chr17	28907487	28907687	+	648.549988	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045457)	TTS (NR_045457)	2322.0	NR_045457	74179.0	Mm.248931	NR_045457	ENSMUSG00000085333	1700030A11Rik	-	RIKEN cDNA 1700030A11 gene	ncRNA	3.25912430066941	3.52727327295326	3.31659425323598	2.54211478621806	3.35066722113615	3.54310679062592	2.84809247858541	3.13604367462068	0.0616712388949698	0.93198318314557	0.975424296683065
Merged-chr13-96106618-4	chr13	96106518	96106718	+	923.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029210, intron 1 of 12)	MLT1C|LTR|ERVL-MaLR	25959.0	NM_029210	75209.0	Mm.40436	NM_029210	ENSMUSG00000051111	Sv2c	4930527L09Rik|AI841971	synaptic vesicle glycoprotein 2c	protein-coding	4.31992163622815	4.30997778854997	4.10865879778011	4.24062134938103	4.45891566058445	5.04229932856884	5.05208447236443	4.80354348881637	1.32519655674362	0.000524675593731379	0.00802619473161527
Merged-chr6-137724072-4	chr6	137723975	137724175	+	815.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11007.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	4.08819324076852	3.79802091175162	3.68300463221196	4.13525602669491	4.05877797945158	3.86011027103609	3.88576637222814	4.04211347513457	0.0444003573967341	0.921738762341499	0.970941268050458
Merged-chr7-80836137-4	chr7	80836036	80836236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25972.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	7.04176376841554	6.7591168792366	6.86245043197589	7.18340788693297	7.14039945981278	6.86170544798321	6.94618856328557	7.01378959041364	0.0240078586598002	0.90761584536438	0.96572638861679
Merged-chr15-89177332-4	chr15	89177225	89177425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	-3374.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	5.44046845398852	5.72938715471448	5.86643006500773	5.38395632414747	5.91062376502329	6.01797059528073	5.85867887964436	5.97021583593059	0.547888461457861	0.0388269684757109	0.197941898662987
Merged-chr12-41290005-4	chr12	41289903	41290103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	196054.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	6.69469758856493	6.61112148739526	7.25912925437917	7.05432456755575	6.44781067036407	6.51692312988382	6.20392669799675	6.53338611554984	-0.72195572928198	0.0025882545884476	0.0284744008270651
Merged-chr15-27937629-7	chr15	27937549	27937749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	88199.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	5.96115077317865	6.42537364523041	6.52369033139827	6.01364830049613	6.05542480127159	6.20793802263058	6.10663025705713	6.28786088686908	-0.12419353016591	0.62515942709372	0.839735974131569
Merged-chr9-95571683-4	chr9	95571566	95571766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	11849.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	6.03980079231696	5.94654086820592	6.65612090713927	6.77222009690677	6.00359360836449	6.0302031837416	6.13499631013777	5.74046950238086	-0.658658093868306	0.0236829080301567	0.143084534690618
Merged-chr12-100849573-4	chr12	100849450	100849650	+	815.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145448, intron 7 of 12)	intron (NM_145448, intron 7 of 12)	49974.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	4.16670394889511	3.74760636222855	3.56638894316503	3.88251885646551	3.64429094522845	3.92028302328496	3.78347850181223	4.24187220886123	0.150881452957411	0.757397033773395	0.904679623885427
Merged-chr14-33247842-4	chr14	33247705	33247905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	30982.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	7.59710503352524	7.29976976894448	7.47504635077627	7.5982302280268	7.3679517818399	7.30236377329047	7.31192246339721	7.23650929835853	-0.259535564697802	0.149077254714664	0.431120542531796
Merged-chr7-80099983-4	chr7	80099861	80100061	+	701.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173011, intron 3 of 10)	intron (NM_173011, intron 3 of 10)	15389.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	3.52898470180732	3.50596772390161	3.63908832737595	3.78469522123339	3.84132725117439	3.70134984427209	3.45871662648206	3.63706254180744	0.13287113257068	0.786242881992718	0.916858200191613
Merged-chr12-85456010-2	chr12	85455910	85456110	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17880.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	3.9048920662227	3.65513212092245	3.95659753690363	3.55254922037158	4.0908992514859	4.51058374616444	3.60290727727736	4.34041027065089	1.09138329100552	0.0256870619389845	0.151155702856728
Merged-chr1-94582690-4	chr1	94582589	94582789	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-214753.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	5.10279592901477	4.84314155909705	4.9986023765562	5.39595049707202	5.22983061851779	5.34253482047444	5.11175192664573	5.34379854220143	0.249844972626717	0.436575092659133	0.725186775580137
Merged-chr4-150913984-4	chr4	150913867	150914067	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4046.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	5.04571942770683	5.07832936633301	4.77881465645607	5.22483613525994	5.40651837789678	4.95818879949662	5.1827801230487	5.32086613605198	0.335019048135603	0.295739165434064	0.60765742950211
Merged-chr8-107455427-4	chr8	107455328	107455528	+	932.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025830, intron 2 of 23)	intron (NM_025830, intron 2 of 23)	19030.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	4.21634161405285	4.48389676228753	4.49696273678995	4.30301448534125	4.73716263877131	4.78802509873229	4.55692603018452	4.65167560600197	0.696719270589638	0.0508047872798764	0.23372763403531
Merged-chr10-127167453-4	chr10	127167348	127167548	+	964.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027739, intron 3 of 9)	intron (NM_027739, intron 3 of 9)	1617.0	NM_001358578	14421.0	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	4.4717045274259	4.58551103570839	4.24253530909778	4.59599709357841	4.11011640624175	4.31946231073085	4.8730642878682	4.69983875848298	0.0957122421486445	0.816986147568912	0.929622615879435
Merged-chr9-21453189-4	chr9	21453098	21453298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 1 of 19)	intron (NM_001357721, intron 1 of 19)	28290.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	6.80268696367483	6.60770675437935	6.6895719659213	6.62322824890842	6.76346772944283	6.80476880750298	6.29591311688413	6.95292297468475	0.0695144226266715	0.756982018300417	0.904554066545557
Merged-chr19-32211044-4	chr19	32210949	32211149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168526)	promoter-TSS (NM_001168526)	-36.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	6.71525511338611	6.93322202270409	6.41305930872394	6.36900393333141	6.14818606878608	5.96291139108833	6.09363893071235	6.07682410728412	-0.817659443057867	0.000955893201795421	0.0129796875640207
Merged-chr7-135680512-4	chr7	135680396	135680596	+	862.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316681, intron 16 of 17)	intron (NM_001316681, intron 16 of 17)	-28182.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	4.13338313994955	4.29064525890343	4.32241528908649	4.1244872047398	4.22361284080798	4.1543758009264	4.8548659984297	4.36272978746253	0.50470843971977	0.222520869798523	0.53059572514787
Merged-chr16-17410430-4	chr16	17410313	17410513	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023348, intron 1 of 4)	intron (NM_023348, intron 1 of 4)	-4099.0	NM_001001983	224020.0	Mm.5718	NM_001001983	ENSMUSG00000041720	Pi4ka	Pik4ca	phosphatidylinositol 4-kinase alpha	protein-coding	5.74175803038677	5.82119274027157	6.02074881480013	6.05854937834755	5.19351666758191	5.50004692894569	5.42026376443666	5.38185491564382	-0.94697853115651	0.000490808966663014	0.007611174605252
Merged-chr2-36214240-4	chr2	36214132	36214332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16194.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	5.78137260850438	6.23167502784875	5.83345056267383	6.13016873727585	6.13929856078975	6.21594693506856	6.13076172052561	5.92562147356871	0.133015777600994	0.595383546210735	0.823897300303943
Merged-chr15-67235238-3	chr15	67235162	67235362	+	887.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045140, intron 1 of 8)	ORR1E|LTR|ERVL-MaLR	8493.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	3.3931071029645	3.40988511204167	3.3935599646973	3.78300636441068	3.2323042041813	3.12101319621283	3.20602266313235	3.4455927623038	-0.939684788914884	0.091633060202158	0.330865398068757
Merged-chr18-34886656-2	chr18	34886556	34886756	+	726.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	25449.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	2.45289959400232	2.40300347780098	2.37784037742167	2.58563024869565	2.86447233886435	2.76454055217804	2.7711803034279	3.07954806813554	2.12030967326151	0.00499291847820851	0.0475058072931966
Merged-chr4-155735110-2	chr4	155735010	155735210	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001101506, exon 1 of 4)	exon (NM_001101506, exon 1 of 4)	306.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	5.63914101139455	5.25609927154354	5.53868383282857	5.5101850314154	5.32187424195786	5.45181389963376	5.45723659919297	5.5347861451196	-0.0931273278899517	0.737991339152072	0.896580162228794
Merged-chr16-14129201-3	chr16	14129107	14129307	+	850.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081154, intron 17 of 26)	intron (NM_001081154, intron 17 of 26)	30067.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	3.79473166294742	3.50803795748998	3.84504953004744	4.20145665683428	3.59684470141027	3.62938915191946	3.87606623638754	3.842770106516	-0.399595748152701	0.426137175692975	0.717577904628585
Merged-chr15-12010538-4	chr15	12010474	12010674	+	988.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14567.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	4.90962716757364	4.66122824719373	5.13088888559732	4.84587236050963	4.79706285436844	4.93757787672417	4.66253717566473	4.94130746767236	-0.110435994528733	0.742801873991589	0.898691548174051
Merged-chr13-93303728-4	chr13	93303634	93303834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284189)	promoter-TSS (NM_001284189)	-23.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	8.1353594175565	8.26125172838557	8.07932304795519	8.09687935631313	8.18578808531142	8.3203416710331	8.05389368095417	8.20979115581554	0.0642861791867046	0.683359120905204	0.870309436951249
Merged-chr7-132551505-3	chr7	132551409	132551609	+	827.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24889.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	3.41097582019203	3.55130613622732	3.61704339793425	3.18805818372833	3.31176314876365	3.3450502069981	3.34189356893974	3.40957421203469	-0.31739985167999	0.550439483415786	0.798632172919405
Merged-chr14-31669352-4	chr14	31669254	31669454	+	868.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28297.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	3.90013137477578	4.18914563985345	4.18867615320434	3.39440122608038	4.176362995424	4.35929913996498	3.93658779293458	4.05014482696003	0.496538201596748	0.313290122622257	0.625166179930743
Merged-chr18-60202324-3	chr18	60202225	60202425	+	888.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9752.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	3.58879919359543	3.58926205176071	3.42104922567317	3.65635616190417	3.87996409831259	3.40754468312005	3.40904753953481	3.58729494763644	0.083668415033774	0.870102762223089	0.951209457504859
Merged-chr17-66094942-3	chr17	66094836	66095036	+	573.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028388, intron 1 of 7)	intron (NM_028388, intron 1 of 7)	6623.0	NM_001278415	72900.0	Mm.2206	NM_028388	ENSMUSG00000024099	Ndufv2	2900010C23Rik	NADH dehydrogenase (ubiquinone) flavoprotein 2	protein-coding	3.5472883459766	3.11288364614598	3.3906961315728	3.36968657520522	3.26068062422872	3.50527366378834	3.32128658978872	3.44329891491579	0.0695743376797445	0.895534681282599	0.960919827429015
Merged-chr1-184851908-4	chr1	184851758	184851958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6011.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	4.21611739267281	4.376676513735	4.01403145071435	4.04366108131407	4.3441711415661	4.24562759035196	4.28799029113738	4.74293673488977	0.613641085763202	0.130371504769872	0.40193242336713
Merged-chr16-27435102-4	chr16	27434995	27435195	+	963.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025615, intron 5 of 9)	intron (NM_001025615, intron 5 of 9)	46139.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	4.92596629807382	4.5369234347298	5.02697008290983	5.24851502413578	4.75440697053111	4.74762529077178	5.00232331608027	4.88827197310995	-0.250142237790152	0.48311000808784	0.757626234111131
Merged-chr10-111446456-4	chr10	111446358	111446558	+	967.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26769.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	4.53611476538041	4.50675557259652	5.06298333857691	5.20572038006272	4.90885830458311	4.35758197730858	4.76619600121514	5.35838510219229	0.0478319273468809	0.910257625445807	0.966671146059764
Merged-chr7-58829352-4	chr7	58829279	58829479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009728)	TTS (NM_009728)	171177.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	5.62437584768399	5.42488323683733	5.17835226160184	5.41260117600406	5.09042735015214	5.21516519796714	5.21789121250587	5.44515083977881	-0.319507250443629	0.280511355744947	0.592534956020925
Merged-chr5-122762359-4	chr5	122762287	122762487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 2 of 16)	PB1D9|SINE|Alu	17023.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	6.83296534751641	6.86682909125059	6.54321059877083	6.84437333478252	6.19986234323295	6.32137571398702	6.42549967955312	6.58669298746748	-0.58086579754631	0.00821959596631942	0.0684043752235064
Merged-chr3-104863855-4	chr3	104863737	104863937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253702)	promoter-TSS (NM_001253702)	668.0	NM_009797	12340.0	Mm.19142	NM_009797	ENSMUSG00000070372	Capza1	CAPZ|CAZ1|Cappa1|capZ alpha-1	capping protein (actin filament) muscle Z-line, alpha 1	protein-coding	6.20874334277156	6.24927175661237	6.30261031784483	6.29841859333783	5.92175736213427	6.36564582333551	6.13915532492639	5.92659760877421	-0.270572660119583	0.253649531704707	0.56492756397914
Merged-chr19-55577604-4	chr19	55577513	55577713	+	901.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360432)	TTS (NM_001360432)	124591.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	3.88318422205661	4.01763808095383	3.99333671774739	4.07797774034403	4.4673206646004	4.16952954508699	4.16997250722031	4.53850568070755	0.871988048441248	0.0329699968279606	0.178204222356854
Merged-chr5-138684051-3	chr5	138683945	138684145	+	611.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	61186.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	3.38539503763258	3.29914445856229	3.27911591348841	3.31607385682427	3.02002172933295	3.00146747431378	3.02545745144364	3.43397199292368	-0.72591949862478	0.205310343385038	0.508859472252119
Merged-chr7-30761965-3	chr7	30761863	30762063	+	915.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1793.0	NM_001166173	73712.0	Mm.30138	NM_028618	ENSMUSG00000060962	Dmkn	1110014F24Rik|AW561900|C130074A08|SK30|SK89|cI-36	dermokine	protein-coding	3.71189921834054	3.74867156485052	3.86076143676102	4.06420290402135	3.7135899667661	3.53375250026962	3.69764332141969	3.60115154756028	-0.677323992737896	0.155076719702564	0.440637693415433
Merged-chr18-38186055-4	chr18	38185965	38186165	+	891.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	23697.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	3.94007474909377	4.30337151784349	4.36792531263627	4.05729674190277	4.5014873971559	4.89601229828444	4.89281734807478	4.72231231276389	1.32656072834359	0.00056262022354199	0.00848447984989307
Merged-chr10-9136298-3	chr10	9136206	9136406	+	873.6889039999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-250236.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.50217494406444	3.59709345883158	3.73996290602298	3.29789935862436	4.22834695566551	4.28307144622878	3.77714652080249	3.84217449532464	1.53670075568085	0.00139008618738284	0.0175683495617406
Merged-chr2-167188978-8	chr2	167188907	167189107	+	739.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008420)	promoter-TSS (NM_008420)	-189.0	NM_008420	16500.0	Mm.205341	NM_008420	ENSMUSG00000050556	Kcnb1	Kcr1-1|Kv2.1|Shab	potassium voltage gated channel, Shab-related subfamily, member 1	protein-coding	4.29148664915928	4.28827328106852	4.24939963607959	4.15002829369697	3.98207864654176	4.13476036086209	4.18662798603692	4.24673954020668	-0.266898567242315	0.503935202665642	0.770592637321386
Merged-chr15-51899388-3	chr15	51899331	51899531	+	895.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21990.0	NM_030132	78581.0	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23 small subunit processome component	protein-coding	3.06884688525298	2.99859016722308	2.95907605870302	2.85903523007077	2.77804052350956	2.73516579848688	2.76418640329007	2.8983513787434	-0.80550035375643	0.195182247945247	0.495943926980143
Merged-chr19-25672324-4	chr19	25672211	25672411	+	962.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045347)	promoter-TSS (NR_045347)	-72.0	NR_045347	100503074.0	Mm.140012	NR_045347	ENSMUSG00000101089	2610016A17Rik	2610317C19Rik	RIKEN cDNA 2610016A17 gene	ncRNA	4.67921718704803	4.79895344455644	4.90718074902021	4.91698003705023	5.71138606929086	5.56939729667256	6.021477263539	5.96040490286951	1.74481121421653	7.52623907947504e-09	4.08939062166377e-07
Merged-chr13-32908416-4	chr13	32908317	32908517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-10277.0	NM_173051	380839.0	Mm.250802	NM_173051	ENSMUSG00000079049	Serpinb1c	EIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1c	protein-coding	6.5462434498942	5.94153098113405	6.41902681792602	6.6341934151696	6.53718444545951	6.00657684765105	6.12539281651612	6.25240387573482	-0.241096545179853	0.367102149270175	0.67147977290697
Merged-chr19-6921972-4	chr19	6921869	6922069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007953)	promoter-TSS (NM_007953)	-161.0	NM_007953	26379.0	Mm.386776	NM_007953	ENSMUSG00000024955	Esrra	ERRalpha|Err1|Estrra|Nr3b1	estrogen related receptor, alpha	protein-coding	9.02232348408651	9.0114527255719	8.562178713475	8.43882111884659	8.70265312092264	8.99428639788787	8.75244293504366	8.65021397459429	-0.00153167031143628	0.993669018391379	0.997702270136287
Merged-chr17-50157543-4	chr17	50157449	50157649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	32948.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	7.17219083752811	7.578463352007	7.60222865907125	7.48526028026399	7.69133533282019	7.30285215563361	7.53075100192962	7.20356716800724	-0.0236165636292355	0.907624860241972	0.96572638861679
Merged-chr17-33817742-4	chr17	33817643	33817843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030697, exon 3 of 11)	exon (NM_030697, exon 3 of 11)	6819.0	NM_016844	54127.0	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	8.38611537360891	8.44582447789362	8.1974506865995	8.15383297223435	8.26156681960749	8.30677027280426	8.31165609051655	8.13661735119227	-0.0531392958621559	0.741566542169408	0.898282277447224
Merged-chr15-58990325-3	chr15	58990233	58990433	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	56523.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	3.7645399581772	3.8167475200103	3.76509076075958	3.88959590581776	3.52555616076646	3.48322145513003	3.70015907265965	3.43223240782724	-0.871681712600005	0.0694987311538373	0.281966690173553
Merged-chr19-47621710-4	chr19	47621604	47621804	+	960.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164639, intron 9 of 17)	intron (NM_001164639, intron 9 of 17)	41685.0	NM_001164639	20874.0	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	4.60977358706522	4.74140562483735	4.61052366994689	4.67434340323153	4.79533964088451	3.98281218485151	4.24417353601826	4.48778141552939	-0.514640010725633	0.214533563307259	0.520353182806768
Merged-chr4-19570110-4	chr4	19569997	19570197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356481)	promoter-TSS (NM_001356481)	11.0	NM_027769	70568.0	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	7.31127617477281	7.0670410345792	6.97050006033563	7.30696228606829	7.24379590003662	6.75260182956952	7.27606095917121	7.00428238763645	-0.115705871707394	0.585948579263005	0.818478990587386
Merged-chr7-100537061-4	chr7	100536953	100537153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183270)	promoter-TSS (NM_183270)	-47.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	7.83483609138571	7.8610579326666	7.2153769635268	7.54194914859269	7.21833789667468	7.47089652616788	7.43682543627425	6.85489872708066	-0.496951684224678	0.0300480153103159	0.16744734286564
Merged-chr6-146759228-4	chr6	146759173	146759373	+	914.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172734, intron 2 of 13)	intron (NM_172734, intron 2 of 13)	34343.0	NM_172734	232533.0	Mm.322121	NM_172734	ENSMUSG00000001630	Stk38l	4930473A22Rik|Ndr2|Ndr54	serine/threonine kinase 38 like	protein-coding	3.79799860658343	4.13396639483463	4.53255677755754	4.07664248123785	4.84399405243176	4.29217363497751	5.15272004146031	4.75118401360163	1.43485438523253	0.000964947018718852	0.0130663726793842
Merged-chr1-173412121-4	chr1	173412039	173412239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-8465.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	7.2803902856012	7.49819032391156	7.49223583374928	7.35236791523837	7.67090440111916	7.49091705368362	7.46443344164224	7.46844633804495	0.167217186462395	0.343387645450478	0.652082726193224
Merged-chr14-45669911-4	chr14	45669804	45670004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-11761.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	5.81390520934499	5.56214774359836	5.34812948676561	5.72629651526471	6.110377897623	5.79183633825423	5.7148831109904	5.55745162746183	0.31535553544431	0.26554385609608	0.577222358621557
Merged-chr4-101185469-4	chr4	101185369	101185569	+	939.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 4 of 24)	intron (NM_146145, intron 4 of 24)	79813.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	4.69833063682918	4.41731292446146	4.81955900156459	5.69186398216924	4.73459813643514	4.5538765638087	5.29310555935015	4.96111213068894	-0.204945814518597	0.652340610326078	0.85455227293875
Merged-chr4-44071947-3	chr4	44071841	44072041	+	807.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015828, intron 1 of 11)	intron (NM_015828, intron 1 of 11)	776.0	NM_001357539	50798.0	Mm.256718	NM_015828	ENSMUSG00000028479	Gne	2310066H07Rik|DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding	3.2837212840033	3.22147971026366	3.59048933740118	3.17143301353021	3.11456063863656	3.06659218480785	3.57452814030363	3.39359405123257	-0.0694433426761887	0.90363936189418	0.964295858405566
Merged-chr7-35750953-5	chr7	35750783	35750983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 2 of 18)	intron (NM_178704, intron 2 of 18)	3571.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	4.60719995916319	4.66579672733299	4.85616135043079	4.71952202348449	4.39183220692112	4.3769764324792	4.46440026757182	4.56518151386107	-0.592375396285066	0.0958151148814789	0.33903480126013
Merged-chr13-97511034-5	chr13	97510952	97511152	+	983.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28351.0	NR_110431	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	4.48403509584495	4.60599551537752	5.023949110546	3.88814851340319	3.73414974038138	3.8774865207914	3.91642155744999	3.8118280702565	-1.86488668912908	0.000211361080328111	0.00381065611364605
Merged-chr17-6957884-2	chr17	6957772	6957972	+	628.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_147155, intron 2 of 3)	intron (NM_147155, intron 2 of 3)	3284.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	3.00559413519838	2.84414927522406	2.94816943670206	2.54016242322555	3.13418218088073	2.64018972557481	2.93683956785673	2.88614922142278	0.328599538831359	0.62395156313523	0.839195335242146
Merged-chr18-77792255-3	chr18	77792154	77792354	+	877.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2296.0	NM_013831	19201.0	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	3.81461117718263	3.94959465438078	3.70935959923109	3.66950873153105	3.78667194709369	3.71179066070886	3.79937705501383	4.0856059549339	0.19793152935382	0.663852242026421	0.860777383674392
Merged-chr13-37482783-4	chr13	37482691	37482891	+	768.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137446.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.84376993659555	3.95336812893528	4.08323507839496	4.39986168231196	3.91172484071897	3.79483912070692	3.87973785675089	3.61371188261818	-0.817749796893081	0.0826156948571438	0.312178295070162
Merged-chr10-128238291-3	chr10	128238171	128238371	+	915.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011589, intron 1 of 28)	intron (NM_011589, intron 1 of 28)	205.0	NM_011589	21853.0	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	3.80119514059571	4.15656243358914	3.69022383578649	3.73755979343053	3.73739115776305	4.33760069207956	3.67614436945486	3.85188131358373	0.178830415578128	0.713897169966901	0.885532068052804
Merged-chr12-71342488-1	chr12	71342388	71342588	+	717.333313	f0_balb.idr	Intergenic	Intergenic	32604.0	NM_001190466	59036.0	Mm.46662	NM_021532	ENSMUSG00000044548	Dact1	4921528D17Rik|AI115603|DAPPER|DAPPER1|FRODO|Frd1|Frodo1|MDpr1|MTNG3|THYEX3	dishevelled-binding antagonist of beta-catenin 1	protein-coding	3.51392297073077	3.32757267341161	3.74295214211692	3.48545972842425	2.87333066911918	3.41171831497051	3.09567837027524	3.10416795941187	-1.51275946334467	0.0116348277276152	0.0879145862870408
Merged-chr3-76025728-3	chr3	76025626	76025826	+	728.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48835.0	NM_178673	213262.0	Mm.379337	NM_178673	ENSMUSG00000034098	Fstl5	9130207J01Rik	follistatin-like 5	protein-coding	3.93799004986539	3.64588324162113	3.63822387081018	4.13544107448842	3.07965298227988	3.43944514833608	3.78071234254443	4.06310072045925	-0.624638697577921	0.297770144402847	0.609981309434463
Merged-chr8-79587483-3	chr8	79587383	79587583	+	966.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52193.0	NM_001256033	73945.0	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	4.49782168381206	4.32784842332238	4.17843664331903	4.47085978189902	3.70714438153255	4.05203281666697	4.20408111012095	3.75002954379017	-1.15857934605519	0.00869804065390876	0.071392739357077
Merged-chr11-71159654-4	chr11	71159558	71159758	+	956.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040696, intron 12 of 14)	CT-rich|Low_complexity|Low_complexity	-14954.0	NM_001004142	195046.0	Mm.240227	NM_001004142	ENSMUSG00000069830	Nlrp1a	CARD7|DEFCAP|Gm14|Gm15|NAC|Nalp1|Nalp1a|Nlrp1|PP1044	NLR family, pyrin domain containing 1A	protein-coding	5.58092435395325	5.27393161386169	5.04009274536519	5.00885087100698	5.33211664769702	5.1807912385177	4.78476764097525	5.26405120174579	-0.134897493569792	0.687642520441531	0.872394741333352
Merged-chr7-109562378-2	chr7	109562278	109562478	+	650.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001326, intron 2 of 19)	intron (NM_001001326, intron 2 of 19)	42246.0	NR_028079	100302499.0	Mm.482651	NR_028079	ENSMUSG00000065016	Snora3	MBI-28	small nucleolar RNA, H/ACA box 3	snoRNA	3.39570374660167	2.88994956017152	3.28758399848505	3.12199901387161	3.0222526394325	3.40238830646294	3.27452136632041	3.44511325294438	0.405533111636033	0.485513580395054	0.759349088660037
Merged-chr3-52390530-2	chr3	52390430	52390630	+	911.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	122193.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	3.24529932919368	3.50426270125819	3.30546916716595	3.04436381240649	3.68162543216205	3.29522658230864	3.45523931185812	3.11608043169313	0.465116798377203	0.412752823448666	0.707787832411092
Merged-chr4-43965166-4	chr4	43965064	43965264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	7462.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	6.21221104111907	6.57802703782967	5.59401425158239	5.50679832308669	6.54594043961493	6.40738301432487	6.0633425051241	5.73447021644114	0.277565492790194	0.418765652551937	0.712054666228573
Merged-chr17-47784604-4	chr17	47784488	47784688	+	935.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-1156.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	4.87142795510488	4.74756392396506	4.72458062059293	4.97685030935078	4.4697142811347	5.04364929032411	4.88280036742978	4.59857760216508	-0.17750788549735	0.618313816775761	0.835969883041169
Merged-chr4-45418394-3	chr4	45418292	45418492	+	849.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9626.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	3.77631594238022	3.32173249157043	3.27912085408457	3.43830063582415	3.26527188657208	3.26283656328312	3.38227478057855	3.27749642080637	-0.597448292487801	0.268069675085063	0.579897015647937
Merged-chr7-67380339-4	chr7	67380253	67380453	+	891.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7495.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	4.96785900340547	4.71241515131236	4.34711292503483	4.75711025774681	4.45646762897672	4.94060404406755	4.71039497674449	4.44048656273155	-0.151118791506031	0.69019004449199	0.87377977774578
Merged-chr6-137541400-3	chr6	137541294	137541494	+	733.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	-21499.0	NM_001271589	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	3.73175692721949	3.67719886953301	3.82993661633589	3.97795363731946	3.68442312071334	3.85099329891309	3.49899185310311	3.31657826534828	-0.651110443975561	0.195275812355871	0.496044870624791
Merged-chr9-119402565-4	chr9	119402488	119402688	+	931.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001313757, exon 1 of 11)	exon (NM_001313757, exon 1 of 11)	410.0	NM_001313757	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	4.73534524148858	4.62092010690492	4.6616657318537	4.13188330359043	4.6157634071922	4.90728841275775	4.52024782214217	4.65857694987937	0.306448316770722	0.427711349989544	0.71887209364609
Merged-chr2-29655676-4	chr2	29655592	29655792	+	903.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	35972.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	3.70694997295506	3.75460464438497	3.5341244207543	3.64677334292087	3.99854301350524	3.70977424950686	4.06413691505614	4.08011782911807	0.906729698830719	0.0441723236482376	0.214368434237261
Merged-chr18-61767910-4	chr18	61767807	61768007	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178928, intron 1 of 18)	intron (NM_178928, intron 1 of 18)	18755.0	NM_178928	106877.0	Mm.26632	NM_178928	ENSMUSG00000033032	Afap1l1	AI173486	actin filament associated protein 1-like 1	protein-coding	5.96081270285781	6.32307847576364	6.06464231858424	5.58633392322806	5.64214397874054	5.90372981384759	5.84309721223518	5.43553273892418	-0.460434217513645	0.117335969788429	0.378837748052733
Merged-chr15-64046506-4	chr15	64046409	64046609	+	980.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	13255.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.70546630898365	4.43155384172933	4.70624443591497	4.52719283544471	4.58979185259325	4.30864427069627	4.40650301779473	4.77281642583737	-0.121015275427435	0.743671630238893	0.899026868132512
Merged-chr11-3913934-4	chr11	3913836	3914036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153142, exon 1 of 2)	5' UTR (NM_153142, exon 1 of 2)	728.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	7.12228051559559	6.89280682130516	6.94689191733707	7.00073047366421	6.84052042826182	6.41556842398253	6.86028725458128	6.79456276520785	-0.344421034906635	0.0962879536656676	0.340048212247575
Merged-chr1-170897180-4	chr1	170897083	170897283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11643.0	NM_023173	80915.0	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	6.11076142869409	5.93068374337527	5.87133188169754	6.05139330985314	5.96657486002441	6.09435040782339	6.01977627394364	6.10747343424862	0.0706012299985355	0.764022725180994	0.907492132891533
Merged-chr16-4743420-4	chr16	4743313	4743513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010443, intron 1 of 5)	IAPLTR1a_Mm|LTR|ERVK	1800.0	NM_010443	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	5.87954010647595	5.36199138776364	5.54465392255816	5.62000906463689	5.7733839913028	5.48138166649376	5.46101813701736	5.67117992876248	0.000391698520403138	0.998885575491937	0.999489377782565
Merged-chr11-98051803-4	chr11	98051712	98051912	+	971.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146028, intron 1 of 10)	intron (NM_146028, intron 1 of 10)	1650.0	NM_146028	217154.0	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	5.24184147594955	5.29210966290852	4.74155433357048	5.50458371846651	5.58844860846475	4.9721706295088	5.42165444506736	5.83846051164679	0.455274630390704	0.199064052306481	0.500890136422619
Merged-chr7-43538743-4	chr7	43538648	43538848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5577.0	NM_021293	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	5.82243752044094	5.52665306374797	6.02795525907215	5.89378953036614	5.25291021520796	5.38614877930008	5.43861785630224	5.5748569146859	-0.713382210762187	0.0107367469120623	0.0831911551367611
Merged-chr9-22259723-3	chr9	22259599	22259799	+	778.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181419, intron 1 of 4)	CpG	196.0	NM_181419	235048.0	Mm.292381	NM_181419	ENSMUSG00000062794	Zfp599	6720416P20	zinc finger protein 599	protein-coding	3.00910885026271	2.67488099922489	2.9484433671852	2.73635497213005	2.85538445230155	2.99447403433487	3.05541944302366	3.27549401651056	0.894930503107499	0.145348005950029	0.424784636808969
Merged-chr14-74855614-4	chr14	74855457	74855657	+	893.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 2 of 19)	RSINE1|SINE|B4	92320.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	4.68835810325861	4.60654487881287	4.2661025367411	4.6271751770464	4.64858540962535	4.85859443672929	4.19773497478824	4.31258077920049	-0.0624311002398619	0.875227868586667	0.953061904631312
Merged-chr15-73755334-4	chr15	73755230	73755430	+	720.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001166389, exon 4 of 6)	exon (NM_001166389, exon 4 of 6)	7304.0	NM_008975	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	3.3828985657028	3.75539174866325	3.50912116494204	3.80616540551966	3.80913411492107	3.5625765557358	3.71437903769038	3.99961901802468	0.432937130524778	0.386645741988561	0.687770216087633
Merged-chr2-154604386-2	chr2	154604286	154604486	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021534)	promoter-TSS (NM_021534)	-713.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	3.51790232001638	3.28373832422477	3.37129812388669	3.08771647294065	2.92154070302246	3.31843180300106	3.13288641033288	2.9429013587449	-0.915545857555356	0.124939128205591	0.392282408758083
Merged-chr8-107116204-4	chr8	107116099	107116299	+	769.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19654.0	NR_104410	21750.0	Mm.6402	NM_009353	ENSMUSG00000031921	Terf2	TRF2	telomeric repeat binding factor 2	protein-coding	3.95743410822842	3.89312865365207	4.23218277726714	3.91149392706702	4.11207264548375	4.27301669275142	4.25249619667756	3.60936942291702	0.230633298110114	0.614384776536145	0.833834687279607
Merged-chr16-16526888-4	chr16	16526814	16527014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	497.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	6.23924666881801	6.42747466698795	6.52683267597685	6.78703956665997	6.56105472908633	6.7023111796507	6.35895762996461	5.83879689285558	-0.168712392359062	0.53408433503689	0.789066961676578
Merged-chr2-165948232-4	chr2	165948158	165948358	+	952.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44379.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	4.62671993357673	4.79047282580467	4.70859155128119	5.02217409624239	4.47824632427716	4.48030015348512	4.68648907242694	5.29136164156247	-0.0591423791881977	0.880745071007211	0.955226400055193
Merged-chr15-81663929-4	chr15	81663847	81664047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110362)	promoter-TSS (NR_110362)	58.0	NR_110362	214669.0	Mm.280768	NM_145993	ENSMUSG00000022394	L3mbtl2	4732493N06Rik|M4mbt	L3MBTL2 polycomb repressive complex 1 subunit	protein-coding	6.90518985387221	7.28614147491763	6.48815842838603	6.83536124354165	7.04854214152167	6.92951121595387	7.0080311456437	6.6707808371923	0.0188625445943493	0.936362950740985	0.97693414934542
Merged-chr5-112282893-4	chr5	112282768	112282968	+	953.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	6177.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	4.98916680752787	4.82548019797627	5.20872369368963	5.63575550003483	4.58529253833548	4.47462405511376	5.12421896021603	4.72284325628519	-0.922398224969246	0.0175012107602217	0.116914001004394
Merged-chr11-63045992-4	chr11	63045900	63046100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15659.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	6.23476441649516	6.40985916471054	6.42193240064353	6.42380789446234	6.43131915494474	6.35156203337932	6.53513219023497	6.51699003499204	0.118985807148785	0.576523393236241	0.813551646620059
Merged-chr16-49165950-4	chr16	49165863	49166063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166210, intron 33 of 40)	intron (NM_001166210, intron 33 of 40)	108477.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	6.12600394623339	5.69260497775043	6.49432606098309	6.32733800238654	6.08649638400071	5.52536360618454	6.62978278659674	6.0168859410912	-0.103550591106374	0.747184986925134	0.900439560306813
Merged-chr3-27228242-4	chr3	27228139	27228339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	45235.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	6.79716325689801	6.4636707719714	7.06922461075763	6.84440185978453	6.83377686323809	6.88643640555992	7.39235483783848	6.94258582399072	0.309342866598782	0.186654674240801	0.484657293989922
Merged-chr18-69586701-4	chr18	69586591	69586791	+	973.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	240531.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	5.13660134477237	4.61773487379861	5.22595306669266	4.93079447257247	4.83430377939426	4.96466976515928	5.04989244343037	5.10302008369222	-0.00432507419783313	0.989727524071825	0.99588367712165
Merged-chr17-31512268-4	chr17	31512140	31512340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021322, exon 1 of 11)	exon (NM_021322, exon 1 of 11)	247.0	NM_021322	57773.0	Mm.143771	NM_021322	ENSMUSG00000024037	Wdr4	AI415180|AI448349|D530049K22Rik|Wh	WD repeat domain 4	protein-coding	6.8256145983502	6.87829684449763	6.55211026509155	6.59672879246946	6.39217626435649	6.61032710697749	6.21022598665265	6.37450925901307	-0.457870095112308	0.0394031695610794	0.199903435634688
Merged-chr4-150002124-4	chr4	150002026	150002226	+	895.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173371, intron 1 of 4)	B3|SINE|B2	1110.0	NM_001291004	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	4.55385240993981	4.69369280704064	4.63643293390155	4.23676324968991	4.2890892875201	4.92214019871609	4.79711613387795	4.91621302620868	0.467966632887829	0.231242420173864	0.540724853688999
Merged-chr19-29522962-4	chr19	29522844	29523044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015567)	promoter-TSS (NR_015567)	662.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	5.20578347658561	5.46961874024974	5.6931171797181	5.36788410425381	5.2720511598739	5.86377484177424	5.43016939785028	5.92403788462713	0.348331237737222	0.262118726047124	0.574100843086496
Merged-chr5-36576412-4	chr5	36576321	36576521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	5976.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	6.94046933739055	6.69816857908999	6.89001837144492	6.99002692486538	7.02846870616629	6.47421625059768	6.65623869592334	7.05722711891509	-0.071714060237295	0.749879801806997	0.901564247164595
Merged-chr6-117166991-4	chr6	117166886	117167086	+	860.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1549.0	NM_001012477	20315.0	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	3.86131982216593	4.31264059093701	3.86182549404153	4.24145533668395	4.16833132705448	4.09336912365027	4.23227471092401	4.24886790303072	0.219207227615797	0.60859679605982	0.830699381505368
Merged-chr1-36073379-4	chr1	36073274	36073474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	MLT1A1|LTR|ERVL-MaLR	4974.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	6.09948306660003	6.59884798227218	6.67899983245592	6.26909779092071	6.289490937732	6.38077281702563	6.30375780183985	5.53799185646769	-0.388047481798181	0.175393334603649	0.470111788570704
Merged-chr8-124066741-1	chr8	124066641	124066841	+	762.0	f0_balb.idr	Intergenic	Intergenic	43268.0	NM_001029876	382038.0	Mm.334891	NM_001029876	ENSMUSG00000031976	Urb2	C77575|mKIAA0133	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	protein-coding	3.02930381193449	2.81361136219371	2.91668097340062	3.14790051587482	2.38739160521244	2.76207687699185	2.64861013411903	2.91511039050687	-1.44405889808937	0.0498276496198871	0.231144569362223
Merged-chr1-74227505-4	chr1	74227391	74227591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9026.0	NM_001357387	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	6.816309043868	7.13705705487796	6.9034030898125	7.17336614276611	6.95625949958596	7.08102318533521	7.56783460712877	7.30794836582702	0.300071562632122	0.174198237700162	0.468536831756677
Merged-chr17-86903799-3	chr17	86903691	86903891	+	800.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13557.0	NM_001277980	78469.0	Mm.67234	NM_030104	ENSMUSG00000037689	Tmem247	1700090G07Rik	transmembrane protein 247	protein-coding	3.98971919890273	3.69977117958066	3.63778420175504	4.21897231124502	3.3941668346543	3.6965687305038	3.73354367989692	3.98781427320992	-0.593328595315142	0.249364692643324	0.560328612484111
Merged-chr1-151932369-4	chr1	151932261	151932461	+	863.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 3 of 5)	intron (NM_197990, intron 3 of 5)	157959.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	4.39010208939318	4.28027462961593	4.21066541301945	4.37998724603939	4.19931530264099	4.2877306632629	4.3708201546364	4.68537447454878	0.170651262599778	0.661778020676616	0.859574776163155
Merged-chr17-5770798-2	chr17	5770698	5770898	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27859.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	5.10488717771863	4.84591970347508	4.78984278606082	5.24586955231716	4.85424850028103	4.75411186783682	5.19778186200653	5.07083712526705	-0.092618375840165	0.785603229499613	0.916584329747337
Merged-chr12-84450503-1	chr12	84450403	84450603	+	870.0	f0_balb.idr	intron (NM_134042, intron 1 of 11)	intron (NM_134042, intron 1 of 11)	521.0	NM_134042	104776.0	Mm.247510	NM_134042	ENSMUSG00000021238	Aldh6a1	1110038I05Rik|Mmsdh	aldehyde dehydrogenase family 6, subfamily A1	protein-coding	3.80913294398465	3.78457915625958	3.65488292983701	3.84937679996523	3.59669046577343	3.59421304619176	3.74467702258822	3.85505350816608	-0.250538093000716	0.587940472350701	0.819444191921882
Merged-chr12-102290865-4	chr12	102290757	102290957	+	906.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	7216.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	4.73589399822967	4.85778596459406	4.58875876948044	4.67885977670416	4.52629944556836	4.35698951497666	4.31009558343465	4.32606979125934	-0.735905828173726	0.0443590455627679	0.214776716149395
Merged-chr5-76184449-4	chr5	76184334	76184534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011626, intron 1 of 5)	CpG	554.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	6.04178927005228	5.58912941952243	6.35213269736004	5.74586642110795	6.13058563769318	5.86561014455376	5.81208786390986	6.01772930991347	0.0268226015321515	0.924293888271998	0.971964228124816
Merged-chr4-59366348-4	chr4	59366205	59366405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 9 of 16)	intron (NM_001163288, intron 9 of 16)	72328.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	7.27956862682863	6.53432957184296	6.97193617840365	7.13025070493456	6.4510543995115	6.50060077181176	6.60779395884219	6.4140475546004	-0.734018646600824	0.00177032634096953	0.0212711105036918
Merged-chr15-67187520-4	chr15	67187427	67187627	+	616.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10645.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	3.73997291511382	3.45384351381376	3.88514930222397	3.73238163522732	3.74472538586841	3.75225509693725	3.38077363988479	3.97052299294716	0.056097045778966	0.910382331059124	0.966675118169837
Merged-chr3-116638525-1	chr3	116638425	116638625	+	795.0	f0_c57.idr	intron (NM_008246, intron 8 of 11)	intron (NM_008246, intron 8 of 11)	-23938.0	NM_030016	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	3.53682919789428	3.66223125830421	3.47419190929808	3.36708860567805	3.71173868718786	3.98720983542478	4.14228621239447	4.04058164495511	1.39867159401563	0.00287735837866857	0.0309610721141723
Merged-chr18-53229341-4	chr18	53229239	53229439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16323.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	6.15177475180512	5.95096416581483	6.49993467826902	6.70268791288064	5.44343440467079	5.96404712908876	6.10117979954875	6.20699056666664	-0.642660337878553	0.0324227701039106	0.176274610205639
Merged-chr12-33311284-4	chr12	33311249	33311449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	L1MB5|LINE|L1	8834.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	6.78861527033361	6.58133014479219	6.48520503731175	6.84385148691472	6.56982394742302	6.30892294611016	6.68609646458643	6.57990036430948	-0.210848817186735	0.337383659211159	0.64706791364188
Merged-chr14-105176389-3	chr14	105176290	105176490	+	711.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134077, intron 1 of 20)	intron (NM_134077, intron 1 of 20)	937.0	NM_134077	74213.0	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	4.05057251288346	4.2770402355398	4.0511519096222	4.24663461830132	4.2167014527789	4.12307927756329	3.98381490942347	4.43503327234656	0.0815966312791819	0.84289189719153	0.940323698985438
Merged-chr15-58133903-4	chr15	58133811	58134011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027435, intron 1 of 27)	intron (NM_027435, intron 1 of 27)	1171.0	NM_027435	70472.0	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	5.0517409661488	5.03148072900902	4.98168261930219	5.12838588446381	5.29746082146053	5.08342116486631	5.2183170113951	5.29855107033894	0.327473596028946	0.269072402112827	0.580620459637407
Merged-chr12-104103623-3	chr12	104103534	104103734	+	877.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172953, intron 3 of 4)	intron (NM_172953, intron 3 of 4)	2521.0	NM_172953	268591.0	Mm.73172	NM_172953	ENSMUSG00000041550	Serpina5	4933415L04|PAI-3|Pci	serine (or cysteine) peptidase inhibitor, clade A, member 5	protein-coding	3.11746830724458	3.02508337692441	3.28159857745348	2.70630455108115	4.30603163156061	3.99123922609099	4.86661356248294	4.40783612838	4.91001617652245	1.81129422719321e-15	3.15995372052416e-13
Merged-chr6-42391461-4	chr6	42391367	42391567	+	805.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-8771.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	3.99770027626474	4.17319885296438	3.88964873984797	4.38805102386229	4.51818210760361	4.12115434098588	4.12808216743586	4.14345275082168	0.261580863060509	0.550925400739064	0.798792452929313
Merged-chr9-13245728-4	chr9	13245620	13245820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033181)	promoter-TSS (NM_001033181)	21.0	NM_001033181	77532.0	Mm.459434	NM_001033181	ENSMUSG00000079083	Jrkl	C030035D04Rik|HHMJG	Jrk-like	protein-coding	5.3195495581814	5.17832177034372	4.99097255217984	5.07912919200493	5.11811017221328	5.43443178400773	5.20440167534201	5.5295492707035	0.33300431064969	0.271773284998015	0.583340283741235
Merged-chr5-125383548-12	chr5	125383442	125383642	+	910.99585	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6475.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	3.98770635254929	4.63795212994754	3.63797180841019	3.65536512791147	4.2498915735972	4.26130963050514	4.16035397558443	4.03632173408113	0.328554786513194	0.517103643332338	0.778652850195737
Merged-chr13-65127545-1	chr13	65127445	65127645	+	579.666687	f0_balb.idr	Intergenic	Intergenic	-14563.0	NM_133680	66631.0	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	3.13689388872242	2.91949057503075	3.19001707612635	2.96031388586498	2.71927413144391	2.87283775034975	2.95418226762204	2.96331219087736	-0.771185362862288	0.20954955815758	0.514046766302012
Merged-chr7-102042399-4	chr7	102042301	102042501	+	838.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 2 of 8)	MIR|SINE|MIR	22764.0	NM_029211	75212.0	Mm.101141	NM_029211	ENSMUSG00000070426	Rnf121	4930544L10Rik	ring finger protein 121	protein-coding	3.6254231876615	3.68842084739327	3.56671163212788	3.68560085461351	3.76272920176158	4.10173497724531	4.00337808034181	3.78682873093235	0.782660616501959	0.0859285782532617	0.319406249490256
Merged-chr13-102722486-4	chr13	102722354	102722554	+	758.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	28896.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	3.76296394918786	3.87643453736068	3.30900876582864	3.10480945875346	3.79842254506025	3.61600164467599	3.59611438682236	3.71239334775107	0.422951109906818	0.444636895520316	0.73102037705466
Merged-chr12-79070138-3	chr12	79070048	79070248	+	910.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181073, intron 18 of 28)	intron (NM_181073, intron 18 of 28)	19522.0	NM_029988	110417.0	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	4.0313399342501	4.62010999283855	3.98837719913552	4.02217117053236	3.23724394727623	3.19048306954172	3.29706765087109	3.30627289631335	-3.3151864583054	1.5414038103036e-07	6.36685928890247e-06
Merged-chr6-39206618-1	chr6	39206518	39206718	+	1000.0	f0_c57.idr	exon (NM_001033430, exon 1 of 20)	exon (NM_001033430, exon 1 of 20)	155.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	5.08277112825502	4.92244982438024	5.4598441259234	5.28817052610709	5.75493613098314	5.52064626841099	5.51062687202761	5.25037106951761	0.572485770442526	0.0625759035212915	0.265011848172785
Merged-chr17-88452606-4	chr17	88452509	88452709	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355742, intron 1 of 5)	L1Md_F2|LINE|L1	11905.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	5.19813638604171	5.53593152841665	4.49001704891467	3.28091486937728	5.11811190926396	4.92539119148185	4.64293870925101	4.28556039541925	-0.264988250392973	0.77209343316728	0.910726384110984
Merged-chr13-74004393-4	chr13	74004303	74004503	+	886.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-5016.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	4.14836140519319	4.18534639823372	4.28623140694326	4.57814075026295	4.42358302322789	3.74361433279008	4.30925869891316	4.32614511081721	-0.216800083074	0.627492059224755	0.841164852244315
Merged-chr11-69758652-4	chr11	69758565	69758765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291068)	promoter-TSS (NM_001291068)	-32.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	8.18078619846091	8.25467959649	7.982637654601	7.86715769707605	8.15563952877643	8.32966851367985	8.09501239722958	7.92749414748633	0.0759268556319298	0.67232070082345	0.865119100634158
Merged-chr6-120539313-4	chr6	120539233	120539433	+	837.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8034.0	NM_144815	214932.0	Mm.255322	NM_144815	ENSMUSG00000058979	Hdhd5	A930002G03Rik|Cecr5	haloacid dehalogenase like hydrolase domain containing 5	protein-coding	3.66964276146608	3.73038500486177	4.02020009804912	3.81387125658672	3.90316844866486	4.00278057519372	3.65636345167184	3.92718400442541	0.184596793642241	0.682974461219636	0.870148191722498
Merged-chr6-145793423-4	chr6	145793339	145793539	+	802.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamTip2|DNA|hAT-Tip100	-14944.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	4.74976043169308	4.57408969414873	4.20379938935814	5.06557852008629	4.34840313476872	4.5443123585986	5.0222700095253	5.07313803034008	0.170554757711887	0.692786389418659	0.875130304756703
Merged-chr11-51889796-3	chr11	51889701	51889901	+	978.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-32171.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	3.57277646643953	3.29198189547341	3.62531728056864	3.8544380239919	3.27572534100187	3.45503725536834	3.65962534504348	3.62321255111774	-0.33735158722774	0.526785997302935	0.78394239517028
Merged-chr2-45216713-3	chr2	45216599	45216799	+	825.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99257.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	2.03448108666369	1.95339571686507	2.09806733908945	1.63672880999906	1.64572772144352	1.92716420685756	1.81887648564278	1.66340845792095	-1.43411766368701	0.148481412411609	0.430253967352462
Merged-chr14-103037245-4	chr14	103037091	103037291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3388.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	7.60249297670266	7.8582691510745	7.96281410633313	7.91358001902488	7.80088687404593	7.90998002780846	7.95794001596675	7.68582240325223	-0.00520303623156071	0.976172888695852	0.991528225629167
Merged-chr8-75170747-2	chr8	75170647	75170847	+	735.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-43197.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	2.56693687894547	2.58152766504856	2.62764155868845	2.2508200474738	2.66048975335406	2.31570543074871	2.42975129289312	2.36627794280223	-0.301898944267774	0.688097673227474	0.872614457715549
Merged-chr15-78859916-4	chr15	78859773	78859973	+	860.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4344.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	4.40349326319249	3.9125023484806	3.97787035184572	4.09809951528315	3.90621908589631	3.87859020846081	4.23092275040565	4.07292400971593	-0.214687957502029	0.623248989108351	0.838922840312846
Merged-chr1-36614788-3	chr1	36614703	36614903	+	855.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201365, intron 6 of 9)	MTD|LTR|ERVL-MaLR	-21471.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	4.01179546263173	4.09118253181649	4.19353462662205	4.13041839652661	3.83675114194278	4.03324674643841	4.25517936566512	3.74129673819576	-0.353309534549111	0.417406216170467	0.711226941855418
Merged-chr13-67500527-4	chr13	67500444	67500644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007575)	promoter-TSS (NM_001007575)	-22.0	NM_001007575	238693.0	Mm.478914	NM_001007575	ENSMUSG00000071291	Zfp58	A530094I17Rik|Mfg-1|Mfg1|Rslcan5|Zfp817	zinc finger protein 58	protein-coding	6.04750757658447	6.16887925938603	5.97368433433668	6.66399556270191	6.87103124412529	6.98735381651994	7.12175197736468	6.84582461837999	0.985019000361479	0.000117028467523885	0.00231259558297686
Merged-chr10-81409561-4	chr10	81409459	81409659	+	966.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152732)	promoter-TSS (NR_152732)	-16.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	4.3268004610173	4.32989382315391	3.73137955351848	4.46046282732176	4.57125329865007	4.58213413131409	4.12269203260738	4.40900709798464	0.432735799590246	0.330385399244525	0.641796043873533
Merged-chr4-149890150-3	chr4	149890000	149890200	+	916.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64906.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	3.40929146934957	3.49329440978095	3.57980247790512	3.59570078340697	3.53672965287601	3.89603270389721	3.51185175650828	3.40801696505089	0.228827908602614	0.647177710773168	0.851605116430591
Merged-chr4-45280353-2	chr4	45280253	45280453	+	835.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081172, intron 15 of 15)	intron (NM_001081172, intron 15 of 15)	-16815.0	NM_027266	69934.0	Mm.46761	NM_027266	ENSMUSG00000035601	Trmt10b	2610042J10Rik|Rg9mtd3|Rnmtd3	tRNA methyltransferase 10B	protein-coding	2.75041782210144	2.76174644716345	2.98521359687086	2.24364403373065	2.55105770777755	2.86187527926469	2.86113854801929	2.54211547845906	-0.0164366319914669	0.982633733972342	0.993821106189047
Merged-chr1-89943408-4	chr1	89943304	89943504	+	770.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12228.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	4.21824755396961	4.12578307934106	4.34728251274749	4.29087248681174	3.96618137778322	4.29876111523866	4.28634794512355	4.17051938651142	-0.180097405560343	0.653818608115323	0.855230946668749
Merged-chr1-191178924-4	chr1	191178848	191179048	+	849.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007498, intron 1 of 3)	intron (NM_007498, intron 1 of 3)	4385.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	4.4741737201146	4.53868435489736	4.11296371535337	4.28710805823168	4.27316781809843	4.56449321384755	4.3312606620939	4.25821466329292	-0.00814691990119332	0.983362686590784	0.993990503512979
Merged-chr14-63146447-3	chr14	63146350	63146550	+	912.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007798)	TTS (NM_007798)	23988.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	4.19875974133931	4.0447171807311	3.69763665601297	3.89400767283373	3.7216321444935	4.02649359976074	3.30388144519919	3.51710406963955	-0.87954225071187	0.0944548198526336	0.336227226559842
Merged-chr3-148987819-4	chr3	148987733	148987933	+	929.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-33198.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	5.18875477342975	4.74201377093583	5.21905667082078	5.4040843477863	5.10679185554554	4.72855476292029	4.93811502471001	4.88536509302739	-0.464395161231022	0.177257436473442	0.47252938357152
Merged-chr4-131977447-4	chr4	131977341	131977541	+	870.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 9 of 20)	intron (NM_183428, intron 9 of 20)	55670.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	4.09672741663849	4.26863615078382	4.33618252563087	4.39290498871119	4.2124723778278	4.05448750053091	4.51587963731392	4.77050778252777	0.307733088413498	0.460858423995915	0.742797920420389
Merged-chr6-85333990-4	chr6	85333872	85334072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178639)	promoter-TSS (NM_178639)	-550.0	NM_178639	94282.0	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding	6.36073038549787	6.04294749515119	5.6410966556162	6.18303644983427	6.58100925612628	6.33305617502468	6.12556407044757	6.28669803809096	0.395734651581721	0.130949371211033	0.402847904555962
Merged-chr11-110475164-3	chr11	110475063	110475263	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	-3352.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	4.03979144975065	4.80109743996318	4.15145949320742	3.81688559279141	4.87757309012339	4.61442395795221	4.93497589770512	4.20126777291992	0.962089688898478	0.0401420062895912	0.202227527764948
Merged-chr16-49896376-4	chr16	49896276	49896476	+	921.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010581, exon 7 of 10)	exon (NM_010581, exon 7 of 10)	40722.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	4.20830806646419	4.39477070450648	4.35132585648708	4.22115025332921	4.59741836235357	4.69006471583228	4.53699763964351	4.43543313530746	0.640200829642066	0.0789756544857267	0.304139377300197
Merged-chr10-81450298-4	chr10	81450210	81450410	+	957.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22821.0	NM_001311127	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	4.80549994575335	4.64744160607359	4.22322840294231	4.10363697817282	4.84406220057782	4.76099305527698	4.20552272632021	4.76915210245918	0.445932665254796	0.290446561314938	0.60264380667063
Merged-chr5-121842864-4	chr5	121842763	121842963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6004.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	6.84936817024215	6.99442025375948	6.6859670702561	6.5333923403068	6.65561637834713	6.62135607926369	6.13587948743008	6.22749575335049	-0.481989856866598	0.0483712226289845	0.227051916084706
Merged-chr7-45406700-5	chr7	45406580	45406780	+	711.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010596, exon 1 of 2)	exon (NM_010596, exon 1 of 2)	720.0	NM_010596	16495.0	Mm.12955	NM_010596	ENSMUSG00000038201	Kcna7	Kv1.7	potassium voltage-gated channel, shaker-related subfamily, member 7	protein-coding	3.53216054244868	3.10798537558905	3.21210692038263	3.46730005701163	3.13714117763643	3.19467599544174	3.42020901255487	3.21052407113734	-0.379084665565448	0.496997638499912	0.766871773483313
Merged-chr6-128834626-4	chr6	128834544	128834744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-8329.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	7.67016217045618	7.89956872911258	7.92594686668125	7.5803785382837	7.71175997935604	7.72694483256336	7.61726030321466	7.09864139010239	-0.272155266140502	0.189970700732767	0.489091927061078
Merged-chr16-78317035-4	chr16	78316941	78317141	+	873.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025192, intron 1 of 6)	B3A|SINE|B2	15370.0	NM_001276263	13052.0	Mm.66222	NM_009988	ENSMUSG00000022865	Cxadr	2610206D03Rik|AU016810|AW553441|CAR|MCAR|MCVADR	coxsackie virus and adenovirus receptor	protein-coding	4.20993843736573	4.43038693464044	4.30756653328235	4.25870620611485	4.26691191326905	4.61342815456452	4.74916690977475	4.63282122464676	0.612168204900013	0.107307845377813	0.361382260156614
Merged-chr9-24770563-3	chr9	24770472	24770672	+	810.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194263, intron 2 of 7)	intron (NM_194263, intron 2 of 7)	3731.0	NM_020496	57246.0	Mm.31452	NM_020496	ENSMUSG00000031965	Tbx20	9430010M06Rik|AL022859|Tbx12	T-box 20	protein-coding	3.40616161178358	3.07113616276032	3.56383976850035	3.74076083114208	3.09775023415308	3.34016165357074	3.49884494351453	3.4047621650548	-0.471375915894936	0.41522329820514	0.709525428617195
Merged-chr2-164372840-1	chr2	164372740	164372940	+	683.0	f0_balb.idr	Intergenic	Intergenic	-16333.0	NM_011414	20568.0	Mm.371583	NM_011414	ENSMUSG00000017002	Slpi	ALP	secretory leukocyte peptidase inhibitor	protein-coding	3.61067747757519	3.55296260408183	3.70547068856605	3.54483382658081	3.38373641780806	3.25530434405694	3.20257455073193	3.39676029520074	-0.996381069918696	0.0561263495794317	0.247975850835041
Merged-chr7-7295739-4	chr7	7295637	7295837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357104, intron 1 of 9)	intron (NM_001357104, intron 1 of 9)	3099.0	NM_001302386	12727.0	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2|clC-4	chloride channel, voltage-sensitive 4	protein-coding	5.6496651073331	5.83665771578126	5.30324730119171	6.04743770869453	5.62774411853442	5.44857448306392	5.62204344253623	5.26598280738799	-0.425285758664297	0.161648356200707	0.450595979871161
Merged-chr10-121374381-4	chr10	121374271	121374471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029364, exon 3 of 14)	exon (NM_029364, exon 3 of 14)	9281.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	6.13404976095611	6.16598404531302	5.58518834349712	5.43887633364729	5.57549834146183	5.55543619799876	5.44249574780621	5.66133776179807	-0.497847013849234	0.104985567811528	0.356374561821901
Merged-chr11-60953955-4	chr11	60953852	60954052	+	907.2374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21895.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	5.30736407101541	5.00989858442036	4.59781840479386	4.95826925500838	5.26619310702624	5.14097358146589	4.90676718116195	5.09823599637659	0.239586869430077	0.474597097509552	0.751800830585175
Merged-chr6-137560608-4	chr6	137560503	137560703	+	916.1875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	10406.0	NM_001271595	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	3.17381450638184	3.00487113952057	3.17427142849411	2.95288970750182	2.83146900232234	3.1114668019086	2.72152480115488	3.11738103976211	-0.5153812781165	0.403650149316022	0.700922982752502
Merged-chr4-138922199-4	chr4	138922040	138922240	+	855.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8193.0	NM_028453	73162.0	Mm.238081	NM_028453	ENSMUSG00000041161	Otud3	3110030K17Rik	OTU domain containing 3	protein-coding	3.98072369614932	3.64484992030579	3.44003714106541	3.48745972108845	4.02525934258665	3.96291759759532	3.96321083636524	3.73626235719726	0.827998230122033	0.0814382784475516	0.309619443521968
Merged-chr15-4026579-4	chr15	4026488	4026688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028266, exon 1 of 2)	non-coding (NR_028266, exon 1 of 2)	160.0	NM_024188	67041.0	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	7.62695610762549	7.52288505281863	7.75079614718666	7.79768866850035	7.36745277927344	7.53911246292073	7.91995414049384	7.673474396801	-0.0609880137895794	0.75306653128141	0.902733716697758
Merged-chr2-128738876-2	chr2	128738776	128738976	+	955.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	39961.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	3.24864547977198	2.79313252426778	3.24908918010722	3.11057818213324	3.1926188699633	3.36251332375066	3.17958604778707	3.30220419016382	0.565861798959795	0.32571006582318	0.637265490488708
Merged-chr7-127091290-3	chr7	127091201	127091401	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178901)	promoter-TSS (NM_178901)	-135.0	NM_178901	101602.0	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	6.39449691695469	6.17415681101778	5.72119881021794	6.00292534447529	4.09036922853452	4.31775465372084	4.15504148832231	4.58472284994927	-3.72159569553392	2.36238819386121e-20	8.2833708990565e-18
Merged-chr16-29735791-4	chr16	29735713	29735913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	156479.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	4.96477270995757	4.74336237626764	5.0314950162964	4.74228158151719	4.88682044502268	5.06901706609067	4.79981813899325	4.96223798620208	0.133249196658196	0.682410606537127	0.869778185644929
Merged-chr16-59583753-4	chr16	59583649	59583849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-27997.0	NM_174848	224273.0	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	5.92497140182142	5.79099189721442	6.37135237219294	6.22724618322257	6.10895959532427	5.73161166394128	5.96327090475171	6.19237128980591	-0.136658690485064	0.608045638122073	0.83032239482552
Merged-chr12-12268283-3	chr12	12268166	12268366	+	727.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	6127.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	3.47116663938211	3.29292734113543	3.56969248649683	3.34799825899325	3.46989222921861	3.29857778433378	3.17683365238317	3.05272982356686	-0.549516672740138	0.322613709721997	0.634065640719627
Merged-chr2-167762762-2	chr2	167762662	167762862	+	919.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71585.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	2.32381091481057	2.25520961171697	2.25212408400318	2.09522652076634	2.27877479700909	2.4981972492364	2.44777249824499	2.57656244176355	1.36387770534911	0.0623928726737646	0.264427644182548
Merged-chr12-38931944-4	chr12	38931847	38932047	+	910.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	148236.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	4.60506149702178	4.78032438388319	4.87567839887195	5.16008866838437	4.60860953241509	4.69501121028533	4.91924375521921	4.72539347089713	-0.316701261044157	0.373821668279399	0.677216414469042
Merged-chr4-59465651-4	chr4	59465537	59465737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27004.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	5.57246649692186	5.52169598849368	5.74932696597452	6.05568926229606	5.23217595499399	5.6369723683636	5.59779623806651	5.45692896067635	-0.475092992197804	0.107261520475746	0.361340705473195
Merged-chr16-36673374-4	chr16	36673272	36673472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7295.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	6.42020444918058	6.59458284610198	6.62075458951204	6.99462248419452	6.31988023716243	6.42626883668217	6.78457276137975	6.41674928936203	-0.284855792225057	0.241113927390372	0.551663395619392
Merged-chr7-123377930-4	chr7	123377822	123378022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025304)	promoter-TSS (NM_025304)	-60.0	NM_025304	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	8.17478901848896	8.26208376325107	7.99484700751808	8.12537584220499	8.04171263295658	8.19317766619344	8.26856591340118	8.15861432942939	0.0270169491134835	0.865678076397925	0.949726204279319
Merged-chr12-4158360-3	chr12	4158249	4158449	+	847.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	24196.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	4.32396102441509	4.13426010937053	4.43589320267305	4.50518658712167	3.64789362509078	3.74052078794261	3.73237392970694	3.86002199398299	-1.73721118676362	0.000116978409202193	0.00231224831674614
Merged-chr13-63258374-4	chr13	63258264	63258464	+	939.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	18335.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	4.88256419549314	4.66524514638695	4.98412532629319	5.47713913227061	4.65533521135457	4.65595875441857	4.59079640446745	4.56503088696276	-0.909043498767698	0.0160446165149705	0.109864334672351
Merged-chr4-133806018-4	chr4	133805926	133806126	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-52415.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	4.19080097826996	4.19154263208423	3.95992346245844	3.91843296941923	4.37147772059525	3.73344003815165	3.66546983319062	4.23035351969539	-0.0506775035534572	0.915939375090042	0.968877649575957
Merged-chr6-116631173-4	chr6	116631056	116631256	+	976.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2157.0	NM_026057	67255.0	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	4.93077302414045	4.96223303066681	4.444100761854	5.03919513438368	4.76684239458821	4.88536487897427	4.80302994295353	4.85888870582598	-0.106206664280336	0.759636512319263	0.905741537670396
Merged-chr8-39338134-3	chr8	39338024	39338224	+	877.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_044988, intron 2 of 3)	L1_Mus3|LINE|L1	40144.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	2.91973959411641	3.13418384223998	3.23754589851957	3.14239526753458	2.37920569300727	2.60710500626381	2.49549802956882	2.72523510996635	-3.42073554404165	0.00011449097361496	0.00227188263260083
Merged-chr8-4162838-2	chr8	4162721	4162921	+	905.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3746.0	NM_001039578	213027.0	Mm.437106	NM_153536	ENSMUSG00000011832	Evi5l	1700084G18Rik|2310039H16Rik|3110007G05Rik|B130050I23Rik	ecotropic viral integration site 5 like	protein-coding	2.74731199381838	2.60544124932787	2.45965809712382	2.65370505155228	3.05974938480964	2.91883597643592	2.91691674187194	2.80947180117616	1.43949612169479	0.0266554737715019	0.155021649446992
Merged-chr6-58756820-4	chr6	58756720	58756920	+	854.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74645.0	NM_001361967	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	4.78399692914438	4.32485538171179	4.42350566725729	5.00915581266338	4.54818430187885	4.8090966506754	4.40408441641731	4.74617374187467	-0.107132520694291	0.787452376726514	0.917568537062929
Merged-chr2-120731545-4	chr2	120731467	120731667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026891)	promoter-TSS (NM_026891)	-50.0	NM_026891	68968.0	Mm.2289	NM_026891	ENSMUSG00000027284	Cdan1	1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI	congenital dyserythropoietic anemia, type I (human)	protein-coding	7.16620052432827	7.17293412756195	6.8783042373069	7.0855684805661	7.07687157017441	7.15077181487299	7.45478383883378	7.03246741642558	0.142896322969756	0.474871736184819	0.75193151536302
Merged-chr13-43557275-3	chr13	43557155	43557355	+	924.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081059, intron 1 of 8)	intron (NM_001081059, intron 1 of 8)	2936.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	4.26560803882986	4.08928229557839	4.64137933925778	4.33499493828215	3.93823215922416	4.09714685175928	4.11024338368442	4.26358608262354	-0.611899383138573	0.144024738424406	0.422701306238685
Merged-chr16-43979831-6	chr16	43979692	43979892	+	955.634277	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007460)	promoter-TSS (NM_001007460)	-742.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	4.87196847534501	4.49371863767234	4.58363635148459	4.60136187410522	4.38095294233226	4.7568203902471	4.81640440255695	4.36020175031705	-0.115237123939689	0.757687797526587	0.904815773586341
Merged-chr3-69117302-3	chr3	69117171	69117371	+	622.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008467, intron 1 of 16)	intron (NM_008467, intron 1 of 16)	9821.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	2.95045279271986	3.03526055642076	2.89095401889453	2.64566441249764	3.0813314070869	2.72428043096591	2.75380910106867	2.88950726461137	-0.0261567454415188	0.967746159502858	0.98857340124644
Merged-chr5-139042543-3	chr5	139042447	139042647	+	774.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359099, intron 7 of 10)	intron (NM_001359099, intron 7 of 10)	-47594.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	3.57970258347451	3.34395781847572	3.43934665729884	3.18104285730322	2.97928197363912	2.99957462714824	3.02366142561368	3.22117490480641	-1.3047608649688	0.0268317712925696	0.155728852644635
Merged-chr9-106368521-4	chr9	106368397	106368597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153459)	promoter-TSS (NM_153459)	-135.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	6.32891649128495	5.94209663170508	5.56137391872613	5.87528071727896	6.61290983190113	6.52213405182834	6.2622086604788	6.11707040317495	0.683120228262945	0.0113016237317278	0.0860793968300868
Merged-chr2-58181007-4	chr2	58180896	58181096	+	787.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17022.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	3.51740809161602	3.23838730924761	3.51789825041787	3.43743347173832	3.39129232264199	3.52134785653542	3.503723123245	3.61789397443357	0.257270165739007	0.607567290298963	0.830072719800728
Merged-chr9-65587089-4	chr9	65586986	65587186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357526)	promoter-TSS (NM_001357526)	-74.0	NR_151702	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	5.87483359224386	5.80164885434783	5.61513516157655	5.70206581905293	5.6299263128991	5.70905314278134	5.32651996563305	5.44258228520729	-0.354756305736563	0.187718572231975	0.486108305395706
Merged-chr12-84712855-2	chr12	84712755	84712955	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14048.0	NM_001033334	627191.0	Mm.152484	NM_001033334	ENSMUSG00000071234	Syndig1l	DSPC1|Gm261|SynDIG2|Tmem90a	synapse differentiation inducing 1 like	protein-coding	3.58705878184617	3.12248171834973	3.1739420811496	3.19691947958816	3.56920716990361	3.08605967903359	3.10108674924796	3.04453270348383	-0.183460454681905	0.761325122395689	0.906512173824769
Merged-chr4-108454827-4	chr4	108454716	108454916	+	900.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4610.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	4.18285312589911	4.17295599000032	4.47506280221641	4.24093765202221	4.02983484834573	4.15943686879461	4.0692646718648	4.50865142277162	-0.171912483036423	0.676625711127517	0.867228621452157
Merged-chr10-53616454-1	chr10	53616354	53616554	+	900.0	f0_balb.idr	intron (NM_027830, intron 5 of 13)	intron (NM_027830, intron 5 of 13)	13985.0	NM_027830	71567.0	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	4.62353482201965	4.35418202416246	4.33604802413504	4.33881444136094	4.67456234163968	4.59747683608103	4.52736541610115	4.37860228397485	0.328093124649717	0.370984533690144	0.675076902636536
Merged-chr2-37757193-3	chr2	37757076	37757276	+	837.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19073.0	NM_001163566	241324.0	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	3.18820146953844	3.3227008452952	3.2474353191465	3.56040526204115	3.1499813654452	3.10204968723728	3.39506082312691	3.06097783364204	-0.620293975333065	0.275868567826916	0.587870450552423
Merged-chr7-110266025-4	chr7	110265925	110266125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 5 of 11)	intron (NM_009302, intron 5 of 11)	44322.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	5.13848494566244	5.08203632078175	4.32831112529805	4.67111477488392	5.31895863957105	5.01081288001849	4.5148469001017	5.33035169480392	0.478873340177558	0.237451149720995	0.547644711485644
Merged-chr1-181257074-5	chr1	181256986	181257186	+	971.914307	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45108.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	4.56656933634402	4.55747319537754	4.83959222194601	4.98461335416609	4.55323673789401	4.23601442890248	4.94781154698426	5.14470244247058	0.0145030134707699	0.97148670546037	0.989698355367312
Merged-chr5-62750573-3	chr5	62750471	62750671	+	886.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	MTA_Mm|LTR|ERVL-MaLR	15606.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	3.47887544542434	3.66884127754639	3.68987923877808	3.73648535392602	3.62654894823166	3.33916904452201	3.40882997629475	3.58694452791305	-0.486580930734301	0.33082960764613	0.642094846510006
Merged-chr8-24427722-4	chr8	24427616	24427816	+	968.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11230.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	5.26478032036515	4.67914906311875	5.06357302473879	5.06553563603153	4.65630462540088	4.70650952897581	4.83666660579805	4.92811787605563	-0.50581338726061	0.139009268307608	0.414593226669937
Merged-chr12-38781035-4	chr12	38780864	38781064	+	859.0729369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007960, exon 2 of 13)	exon (NM_007960, exon 2 of 13)	882.0	NM_007960	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	3.06211819798479	2.96664653431143	3.35392895024966	2.85905692154818	3.15668088243527	3.30063370146127	3.39000378570114	3.29871877144393	0.867842709024536	0.128922331727127	0.399459753542857
Merged-chr7-25720093-4	chr7	25719995	25720195	+	739.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1042.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	3.60719503639022	3.68857890133805	3.55308066826223	3.47135009890599	3.33976286924555	3.67044888570379	3.91715931223475	3.49424269269407	0.127785015950266	0.800426667216156	0.923040237917604
Merged-chr10-13199413-3	chr10	13199264	13199464	+	851.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-6227.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	3.64122595873822	3.59837395845525	3.22823062680904	3.62656748468935	3.18544408451473	2.99106363793816	3.02284219016093	3.16430729173497	-1.68375308565661	0.00451100533124715	0.0440149209695463
Merged-chr18-74778966-7	chr18	74778880	74779080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028560)	promoter-TSS (NR_028560)	-232.0	NM_177470	52538.0	Mm.245724	NM_177470	ENSMUSG00000036880	Acaa2	0610011L04Rik|AI255831|AI265397|D18Ertd240e	acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	protein-coding	7.06850123514335	7.34912279940719	7.41889543431295	7.09990182130841	7.06754970737842	6.94603829807547	7.17212709356047	7.11262063457827	-0.217003342866384	0.264653561083618	0.576566406596513
Merged-chr4-40978052-3	chr4	40977951	40978151	+	942.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290448, intron 2 of 15)	intron (NM_001290448, intron 2 of 15)	7108.0	NM_023739	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	4.09203932882392	4.20274831529733	4.39305952444549	4.48539392924041	4.31428603960719	4.06118325296075	3.97591013461278	3.76273314208805	-0.647139145402242	0.143577371244614	0.42198034015215
Merged-chr17-33909364-4	chr17	33909289	33909489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045146)	promoter-TSS (NR_045146)	-56.0	NR_149750	13163.0	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	7.98203823885084	8.0869019130693	7.98335894819276	7.90264913644767	8.16563097222313	8.17472585159785	8.19521598851941	8.0843768628289	0.217114140066433	0.159714095922485	0.447441608254041
Merged-chr12-17715873-4	chr12	17715752	17715952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	25043.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	6.88122414305442	6.88627844110834	6.81332227728605	7.10325527626522	6.78983868041692	6.77473390558416	7.18572744125299	6.80848838334536	-0.0516827016335392	0.805994744097691	0.925320965969831
Merged-chr4-145229307-4	chr4	145229217	145229417	+	969.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	17553.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	5.26649902417058	5.25374267639749	5.82663814402815	5.9701230498201	5.31312427777387	5.19274029112385	5.6129266287406	5.73345116827521	-0.264124666210811	0.426465052920588	0.717926209778027
Merged-chr14-101608828-4	chr14	101608708	101608908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081278, exon 1 of 19)	5' UTR (NM_001081278, exon 1 of 19)	383.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	5.41112370787427	4.96073572941059	5.84032404463205	5.62911675921604	5.34005163895239	4.94784166224134	5.38489074783869	5.40826450941168	-0.380633099659878	0.256502834587292	0.568162252716061
Merged-chr6-17611828-4	chr6	17611717	17611917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-25193.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	6.25651331771756	6.40315627891502	6.19699431133293	6.57640734746647	6.58847002394368	6.56577193952877	6.83878417252412	6.38511720162919	0.326177339001399	0.159172911330755	0.446493346033963
Merged-chr2-119357082-2	chr2	119356968	119357168	+	943.25	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	5826.0	NM_026929	69065.0	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	3.5333041381985	3.53674008888263	3.37391320798936	2.77266346918526	5.1331451662161	5.07728034991232	4.90424265094272	4.46265724539438	4.90146587386339	3.62951663545104e-19	1.10404001963577e-16
Merged-chr10-41968371-4	chr10	41968260	41968460	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 8 of 17)	intron (NM_001034858, intron 8 of 17)	50022.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	5.55503849222028	5.29619390637964	5.07776360863586	5.42434994398128	5.49693405291923	5.14372955520258	5.37016466412372	5.3057520098876	-0.0186003790396176	0.950104465672094	0.982204611275017
Merged-chr17-34122644-4	chr17	34122510	34122710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010386)	promoter-TSS (NM_010386)	-3.0	NM_001204973	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	6.7165885029482	7.19299472366404	6.3427030934708	6.586721793281	7.03784533291998	7.42771520119555	7.12114253980183	7.05003074496079	0.578580798802205	0.0181949575392529	0.120161336304183
Merged-chr1-180987973-4	chr1	180987881	180988081	+	797.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29588.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	3.44770156091708	3.56177412803498	3.18995184951808	3.18581907187457	3.7038051287795	3.67890678799227	3.59832672509893	3.84657263754211	1.18388052343107	0.0186288031609802	0.122108811142408
Merged-chr16-75593936-4	chr16	75593792	75593992	+	908.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198302, intron 1 of 4)	intron (NM_198302, intron 1 of 4)	1001.0	NM_198302	224344.0	Mm.273214	NM_198302	ENSMUSG00000032940	Rbm11	A330018F01	RNA binding motif protein 11	protein-coding	3.44317039179547	3.71015142028068	4.04546426730779	4.09490747558897	4.01896884859048	4.07702944856775	3.93760183057822	3.69322440069044	0.221592061161973	0.655508031755255	0.856133253680017
Merged-chr7-97788615-8	chr7	97788513	97788713	+	921.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357364)	promoter-TSS (NM_001357364)	72.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	4.38458412411834	4.37012687228364	4.425654179468	4.08318007187344	4.0787370576846	4.63376194458732	4.09477075155994	4.10964583561419	-0.166573437435988	0.692565765320727	0.874991366722236
Merged-chr4-53027326-6	chr4	53027234	53027434	+	775.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	15454.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	3.31732987537155	3.35983526144644	3.31775022851439	3.38487605286	3.19214124907309	3.99465441570548	3.10661814397391	3.78378342593215	0.734524999180121	0.211648983409174	0.516351762401644
Merged-chr11-4521102-4	chr11	4521001	4521201	+	852.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028860, intron 4 of 17)	intron (NM_028860, intron 4 of 17)	73714.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	4.00289417159055	3.61561081503785	4.0937755754759	4.08215517746578	4.12792118411475	3.74391725211071	3.93910625804677	4.00107441714843	0.00207312167800217	0.996384830138316	0.998602617451138
Merged-chr7-81199958-4	chr7	81199854	81200054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13850.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	5.90238384327458	5.76481429699473	5.96912113712633	6.09565283698921	5.74818401570676	5.62876606545159	6.15241716588654	5.65191013763651	-0.215113278994211	0.421549728678636	0.714001052191097
Merged-chr10-8358395-4	chr10	8358288	8358488	+	982.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 2 of 7)	intron (NM_177387, intron 2 of 7)	160437.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	4.44125838400261	5.08692022940142	4.83996989111335	4.92920230622729	4.55673292614795	5.45605911239982	5.08847483058504	5.07927810205019	0.438255086022822	0.254528243588132	0.565927925672817
Merged-chr6-4948158-1	chr6	4948058	4948258	+	719.666687	f0_balb.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	44838.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	3.27077633117676	3.20119802077342	3.5687122382574	3.61905908419278	3.04795268905689	3.06585406090522	2.87677481465878	3.02455883554556	-1.72110735712895	0.00489162981589298	0.0467797015538689
Merged-chr5-90882376-4	chr5	90882275	90882475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8870.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	5.57916517782393	5.12392095919216	5.67035082258482	5.85399809479709	4.94989338535011	4.97809820472403	4.59036289722088	4.60804068796589	-1.49151029234753	2.01615308111347e-05	0.000513077440688509
Merged-chr1-84864878-4	chr1	84864782	84864982	+	971.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025386, intron 1 of 3)	intron (NM_025386, intron 1 of 3)	25041.0	NM_025386	66153.0	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	5.02938541110473	4.71092084088359	4.58307162738088	4.6152790460808	4.89120212581384	5.13696209029544	4.94151023293287	4.78546865444514	0.41836466632978	0.217195312367953	0.523995275425022
Merged-chr7-122199475-4	chr7	122199354	122199554	+	853.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13223.0	NM_001316689	26918.0	Mm.20452	NM_012016	ENSMUSG00000030866	Ern2	Ern1|Ire1|Ire1b|ire1-beta|mIre1	endoplasmic reticulum (ER) to nucleus signalling 2	protein-coding	3.83388103187612	3.73320585931439	3.88397208267853	3.80629834131462	4.14154784420001	3.60548938884285	3.81864724498012	3.92928661909351	0.24692057074225	0.589954044365603	0.820643715534478
Merged-chr16-94007378-4	chr16	94007257	94007457	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019500, intron 1 of 2)	intron (NM_019500, intron 1 of 2)	1480.0	NM_019500	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	4.37124950061277	3.76653660087701	4.51784407969108	4.1815176741711	3.75856555839423	4.03459940786413	4.14327868304573	4.20408201189822	-0.494311995529574	0.284538280294345	0.59632983697174
Merged-chr2-116923412-3	chr2	116923308	116923508	+	919.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23256.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	3.52761256529043	3.47945034123017	3.71890486175821	3.45518785978599	3.02834364939635	3.35427416710065	3.3508909071291	3.36175140795239	-0.975344336039521	0.0727062286272457	0.290103517431399
Merged-chr7-82744535-3	chr7	82744442	82744642	+	955.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046004, exon 3 of 4)	non-coding (NR_046004, exon 3 of 4)	11102.0	NR_046004	77800.0	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	4.12550381910208	3.99475848652945	4.73930410564989	4.71755125448444	3.68549162736387	3.60610710899345	3.96189712486773	3.68872537960135	-1.90372716156885	0.000141981713992122	0.00272475503376793
Merged-chr17-74804028-3	chr17	74803931	74804131	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152817, intron 13 of 19)	MER20|DNA|hAT-Charlie	86281.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	3.89535452284974	3.98405607904	4.09956591853541	3.14615228365546	5.78843215899876	5.54055385538726	5.79561644550622	5.35917368518339	4.26302740140413	9.66991266096869e-24	5.29457471765454e-21
Merged-chr14-33857171-4	chr14	33857037	33857237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-45854.0	NR_131113	218902.0	Mm.107791	NR_131113	ENSMUSG00000115751	4930503F20Rik	4930453C15	RIKEN cDNA 4930503F20 gene	ncRNA	5.46638480803683	5.31016863930857	5.12816585554507	5.87409469376478	5.25235646367181	5.33979580117549	5.32756875489263	5.22636802641444	-0.380893243668546	0.232764340453261	0.542428398019993
Merged-chr15-67300723-4	chr15	67300590	67300790	+	908.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045140, intron 5 of 8)	L1M4|LINE|L1	73921.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	4.25196376349175	4.32494948734609	4.29611055009231	4.93646724219837	3.69296901789564	4.13612723458875	4.1426854317688	3.77685876623492	-1.41911585161721	0.00261384727617333	0.0286982932702053
Merged-chr13-81125346-4	chr13	81125248	81125448	+	957.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	161274.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	4.68765701635328	4.7685243652678	5.23747494448787	5.39496245572173	4.87513863332913	4.687464056348	4.96814879857911	4.98900813494421	-0.36964299907786	0.308324671526167	0.620728298903074
Merged-chr12-69987163-4	chr12	69987056	69987256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022028)	promoter-TSS (NM_022028)	-154.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	7.80202751357116	8.18801753192485	7.65616896555509	7.75392882491693	7.89788213602959	8.22523187658487	7.80334700293171	7.34837608775691	-0.0144593827115975	0.949113879895234	0.981683593064559
Merged-chr11-114663124-2	chr11	114663024	114663224	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5419.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	2.86451979460464	3.08779972561274	2.92960203372769	2.86561362975505	3.172950298586	3.03670943395699	2.98100106994132	3.04903156829001	0.544635880444026	0.346406564348915	0.654670972673218
Merged-chr17-23980706-4	chr17	23980603	23980803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-5473.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	7.09795242475443	7.06191935700032	7.02602910986153	7.21516520329155	7.2791949653341	7.13862103411761	7.0516663030496	7.17449873714437	0.0797185824138982	0.667582931107478	0.862545549902349
Merged-chr10-86778786-7	chr10	86778685	86778885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175331)	promoter-TSS (NM_175331)	-220.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	8.1190543872482	8.30825466262971	8.65771860684814	8.00376292573627	7.8421997713351	7.9780155207792	7.84832962683829	8.22887114034404	-0.396528599651246	0.0508018997633205	0.23372763403531
Merged-chr13-113548139-4	chr13	113548028	113548228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45284.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	7.55200823066746	7.99313005547546	7.82089023766377	7.04335165943553	7.80998399997909	7.88367274265443	7.18822063896859	7.48316818489524	-0.0299589123767002	0.907162372350651	0.965624681953793
Merged-chr9-88953357-4	chr9	88953258	88953458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3562.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	7.8052825319059	8.33164191136608	8.29285704888988	7.85887285548062	7.0894810684466	7.24866577748465	6.97956016402649	6.66496240581337	-1.43037925394126	9.85583266612408e-11	7.5433151972263e-09
Merged-chr9-44083975-3	chr9	44083867	44084067	+	879.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198091)	promoter-TSS (NM_198091)	-953.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	3.84886973771939	3.70310118995895	4.16210240497439	4.05748531471049	3.79098915332623	3.8063579920302	3.61610311525658	3.94455831233362	-0.469236519622118	0.310603738604164	0.622685917761042
Merged-chr9-65547922-4	chr9	65547820	65548020	+	840.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32167.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	3.90868763348617	3.74854190234353	3.95426285181643	3.45353546984652	3.65643070032926	3.7761720784345	3.89180777061668	3.53892838999118	-0.140753796458289	0.774762778983726	0.912015476959047
Merged-chr7-31105336-4	chr7	31105280	31105480	+	952.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110252, intron 5 of 13)	intron (NM_001110252, intron 5 of 13)	5617.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	4.59276314729716	4.43707700122915	5.08272419909301	3.9467892539931	5.20948463589058	5.09199443944465	5.17549331041476	5.40764373106776	1.32534134917276	0.000999933839731418	0.013441792403823
Merged-chr9-35199348-4	chr9	35199295	35199495	+	961.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177845, intron 1 of 6)	intron (NM_001177845, intron 1 of 6)	510.0	NM_001177847	117149.0	Mm.23987	NM_054096	ENSMUSG00000032041	Tirap	AA407980|C130027E04Rik|Mal|Tlr4ap|Wyatt	toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	protein-coding	4.54318483823176	4.87234299680921	4.6704316846455	4.97130620424995	4.88739414647415	4.80400167060429	4.56679783667256	4.78246092653183	-0.046111324619953	0.895381908200348	0.960823579379062
Merged-chr7-28179412-4	chr7	28179314	28179514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010092)	promoter-TSS (NM_010092)	-69.0	NM_001037957	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	7.55342462062016	7.76195687075812	7.34002154269505	7.33479930089643	7.71956237056945	7.7497013518127	7.45332094198299	7.61924651104243	0.180078757820137	0.345842147524383	0.654194604378828
Merged-chr15-36323918-4	chr15	36323795	36323995	+	835.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40748.0	NM_001357631	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	4.17476937567604	4.32336815556622	4.38282761709348	4.3060392390205	3.95528864736732	3.87373191134719	3.96500155052473	4.17283261916486	-0.792425310094972	0.0548151709999501	0.244543344193384
Merged-chr17-50471419-4	chr17	50471317	50471517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38130.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	5.85328837013321	6.16422799516423	5.82991256074483	5.86560185008046	6.26580256319378	5.98190280250906	6.26555977985395	5.58253851183928	0.198859709537663	0.467482100707648	0.747012132863453
Merged-chr13-41000291-5	chr13	41000155	41000355	+	864.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026550)	promoter-TSS (NM_026550)	-755.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	3.33215250475799	3.65340858473068	3.39592154019325	3.1806627738324	3.43547084563197	3.9387978463636	3.60770687913789	3.76826628645782	0.968835151479044	0.0626951415978416	0.265313140750176
Merged-chr1-171281259-4	chr1	171281174	171281374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008911)	promoter-TSS (NM_008911)	-88.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	8.20627537801379	8.29101314284335	7.45803021186224	7.79995041653078	7.80606568873506	7.96246113910642	8.26177083476238	7.84932409221339	0.00146078646486768	0.994846771911242	0.998170313465511
Merged-chr11-20304492-2	chr11	20304392	20304592	+	744.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_018861, exon 8 of 8)	exon (NM_018861, exon 8 of 8)	28221.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	2.89748360238389	2.80207630252908	2.89784409610391	2.6492044932153	2.97417077375157	2.87540343658861	3.10978254453674	2.83335489970323	0.664724655991296	0.275184571382793	0.586982242558338
Merged-chr7-25776925-4	chr7	25776847	25777047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 6 of 19)	intron (NM_009465, intron 6 of 19)	11786.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	7.91869724095655	7.84595298936179	8.02301204366084	8.17425450463756	7.7916176462313	7.87065222702876	7.93774891822401	8.0437295665735	-0.119352514104325	0.485827376303022	0.759631544886603
Merged-chr18-37956365-4	chr18	37956192	37956392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153793, intron 1 of 7)	intron (NM_153793, intron 1 of 7)	733.0	NM_153793	225392.0	Mm.233516	NM_153793	ENSMUSG00000044024	Rell2	4631403P03Rik|ependolin	RELT-like 2	protein-coding	6.37708933668769	6.09215811668034	6.0192795371702	6.31333253604262	6.47464125890747	6.26370590346462	6.49197622213966	6.28382038846462	0.25794950834803	0.26221894275279	0.574115106927125
Merged-chr5-105567106-4	chr5	105566993	105567193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	47622.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	7.00542699052579	7.69843950849303	7.20840575411802	6.34612014398006	7.43144680708722	7.35232659079428	7.25665458971176	6.93566385458966	0.147378121783759	0.611508074429337	0.832342777944043
Merged-chr16-42907553-4	chr16	42907461	42907661	+	861.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285805)	promoter-TSS (NM_001285805)	-84.0	NM_001285805	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	3.94728068683864	3.9931406342453	4.0417944694696	3.84356276482925	3.93900538977772	3.91293777342171	3.66474061612294	4.16805732885141	-0.0487240242351103	0.912436139246498	0.967207481621882
Merged-chr7-80011683-4	chr7	80011563	80011763	+	954.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-13151.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	5.15085229621822	5.4435090094466	5.24952419994848	4.5410350912648	5.41044970476808	5.67689769831002	5.34218606395261	5.36548149304228	0.59893874043882	0.0840665837783877	0.3153389898433
Merged-chr15-81960276-4	chr15	81960137	81960337	+	890.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282041, intron 1 of 5)	intron (NM_001282041, intron 1 of 5)	693.0	NM_001282040	29858.0	Mm.18939	NM_013872	ENSMUSG00000022474	Pmm1	C77612	phosphomannomutase 1	protein-coding	3.84031614741204	3.98859400983156	3.73028951424938	3.64739988159967	4.13867138311975	4.11436052875705	3.8252987103135	4.16429327319618	0.74677599958926	0.0885165409909611	0.324651871551276
Merged-chr15-79741386-4	chr15	79741288	79741488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194342, intron 1 of 16)	intron (NM_194342, intron 1 of 16)	1148.0	NM_194342	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	5.5882147645518	5.6269273121714	5.29944970318348	5.13273922577452	5.63138150337672	5.56941664698273	5.65980148374436	5.63595936887617	0.369619530311095	0.195587135481869	0.49638795965428
Merged-chr1-87626553-4	chr1	87626450	87626650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	6238.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	8.29607776594475	8.38069682768437	8.43720284704741	8.49090797445714	8.43237170108981	8.31745103231768	8.58595631035221	8.33664591978322	0.021398957542663	0.890452847119345	0.958997364311038
Merged-chr12-79812994-4	chr12	79812873	79813073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 10 of 10)	intron (NM_009014, intron 10 of 10)	111760.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	5.33339052748823	5.19740402217409	5.42202375722503	5.43317994633448	5.14926644929013	5.50882328279643	5.50231351712567	5.55195680698848	0.127764819964156	0.659826560365523	0.858575458671667
Merged-chr12-40555246-4	chr12	40555158	40555358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	109205.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	6.4963309214546	6.33680552839283	6.70846141154059	6.70592796236877	6.60498106820904	6.47937762440472	6.2117564879864	5.97250507839605	-0.333029520816207	0.180068210088239	0.476417502756723
Merged-chr11-114883430-2	chr11	114883330	114883530	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6611.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	3.4695320493699	3.19072250615542	2.892900285411	2.84946987266241	3.02601755212689	3.32744802686307	3.14297602447357	3.15334605320816	0.175934642007701	0.772791150113472	0.911052408089747
Merged-chr14-9389427-4	chr14	9389334	9389534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-494661.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	6.7179371647094	6.77737997026655	7.12048473299548	7.17361376603912	6.89003003745697	6.54956167815919	6.80091201978871	7.05887050857783	-0.183175799232772	0.415740793629678	0.709886482687489
Merged-chr14-47189403-4	chr14	47189306	47189506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008102)	promoter-TSS (NM_008102)	7.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	6.38749276270912	6.71694209852676	6.33327498866356	6.53880829947594	6.86426844707567	6.49127336833537	6.07565355521883	6.38405261600306	-0.0132453352554121	0.95870130318592	0.985258503915927
Merged-chr2-129309216-4	chr2	129309111	129309311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010554, intron 1 of 6)	intron (NM_010554, intron 1 of 6)	761.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	6.19470064853934	7.09455936036386	6.41768654015439	6.52356991812986	6.76489741608912	6.87527056819193	6.4737339806409	7.05225618083158	0.285583674151648	0.285461315857384	0.597175035258208
Merged-chr17-88058095-4	chr17	88057999	88058199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	PB1D9|SINE|Alu	6833.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	6.1181030252207	6.1626614232355	6.48569047025035	6.55575186331589	6.00048864276827	5.55418091221101	5.98272444980499	5.86963753954288	-0.748035185819601	0.00405884212640443	0.0405195404930352
Merged-chr2-59976565-4	chr2	59976437	59976637	+	856.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 6 of 35)	intron (NM_001001182, intron 6 of 35)	-93931.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	3.94044540929766	3.95835339457745	4.21268756870611	4.25917356432016	3.92694640202971	3.64766496031285	4.19324195264111	3.88735041313649	-0.479098005498418	0.290064434105398	0.602184458822498
Merged-chr1-165736281-4	chr1	165736161	165736361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27497.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	6.56177597208205	6.45128212410161	6.862911249413	6.835345102239	6.47446936644737	6.53008130349201	6.62228126812699	6.3669843519383	-0.283896517665729	0.198871380047693	0.500529187808591
Merged-chr17-30007076-3	chr17	30006979	30007179	+	939.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151443, intron 1 of 4)	intron (NR_151443, intron 1 of 4)	2040.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	3.98907282004767	4.50584298733084	3.87484694970442	3.89781922372729	4.51628321512792	4.36775167843074	4.53773335827566	4.28172024876002	0.830472232554411	0.051146410182008	0.234706899586286
Merged-chr16-84735309-4	chr16	84735181	84735381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017404)	promoter-TSS (NM_017404)	21.0	NM_017404	27393.0	Mm.103655	NM_017404	ENSMUSG00000022889	Mrpl39	C21orf8|MRP-L5|ORF22|Rpml5	mitochondrial ribosomal protein L39	protein-coding	7.64100032424034	7.40843377604291	7.47413077158688	7.74543320682169	7.8519441093936	8.0506996164331	8.23476269289909	8.09929484112336	0.624691688648315	0.000620546505767027	0.00917720335216939
Merged-chr16-35765097-3	chr16	35765007	35765207	+	996.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	MTD|LTR|ERVL-MaLR	4249.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	5.57833956929643	5.30927694055408	5.70664933898432	5.46109459515043	4.28086108454807	4.71564428340993	4.5071053824984	4.57391310293513	-2.02934585993937	4.5657002273188e-09	2.58537769674085e-07
Merged-chr11-95520912-4	chr11	95520814	95521014	+	957.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6349.0	NM_130858	104079.0	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	4.52590398339447	4.22167663972821	4.17717244385773	4.30167868171216	4.53203454934967	4.53585590843477	4.54257752990531	4.17472830722854	0.343779553179921	0.371765607895859	0.675721058891926
Merged-chr2-116976549-2	chr2	116976449	116976649	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76397.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	4.02773067122563	4.19753250103073	3.8772335593641	3.81966426249537	3.77506179625061	4.41394985753727	4.14437263446366	3.64290353459004	0.105191102747951	0.826326965007662	0.93341395042234
Merged-chr13-98809234-3	chr13	98809137	98809337	+	832.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 1 of 25)	B2_Mm2|SINE|B2	6212.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	3.55823621877357	3.8106441471101	3.35928456036871	3.30904832073225	3.9820077402694	3.74046680334953	4.16650076017091	4.25825046467873	1.56098133834252	0.00146142919784351	0.0182753107648108
Merged-chr16-16584836-4	chr16	16584741	16584941	+	861.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	15137.0	NM_001301817	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	3.99808565618781	3.74983375903963	3.52355948841185	3.69565238124035	3.69678854963635	4.07687500451566	4.06488970132279	3.64301796437507	0.378988473506564	0.42796764446094	0.719049683227189
Merged-chr3-79229563-4	chr3	79229471	79229671	+	952.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	16652.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	4.33980871411365	4.29050331870559	4.52098700222437	4.5375385705557	4.70849411614625	4.25994232077189	5.06248670074243	4.84964700122381	0.695070659846212	0.0737080491349701	0.292404800462024
Merged-chr11-31784463-3	chr11	31784384	31784584	+	842.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	40063.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	3.77016755292354	3.88936616268986	3.99954134676082	4.65858993651629	2.9194076423923	3.18753887704615	3.28472992283077	3.06635039407206	-4.22704529385982	7.04562540402724e-08	3.11491037660407e-06
Merged-chr10-44631773-4	chr10	44631669	44631869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-173021.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	7.27629462842662	7.34252825650821	7.15690419743299	7.34190643554877	7.23474581548537	7.29887588355102	7.13242258818243	6.91171967284581	-0.178782814083491	0.344807529026107	0.653255859394495
Merged-chr18-42513401-4	chr18	42513307	42513507	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360881, intron 1 of 20)	intron (NM_001360881, intron 1 of 20)	1920.0	NR_110344	56070.0	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	5.01400341409969	4.91595209614748	4.86391401141167	5.41252399141611	5.04231595878048	4.91913661921193	5.48149217801646	5.40574664348905	0.259717361530949	0.455434154129759	0.738955495643786
Merged-chr13-34282261-3	chr13	34282159	34282359	+	935.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	62923.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	4.05156714972754	3.75705790035259	4.37253509914714	4.07741621138047	3.66294412815893	3.67800736307442	4.12129264150241	3.90511172327235	-0.626596599348118	0.185892638664179	0.48382522039921
Merged-chr19-43709851-4	chr19	43709738	43709938	+	957.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053103, intron 5 of 12)	intron (NM_053103, intron 5 of 12)	20149.0	NM_053103	93685.0	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	4.75019704284267	4.94882767545643	5.1597978359042	4.13114553608234	5.37131568701605	5.5385261535594	5.62513256185141	5.15616851772545	1.2208869294081	0.00127647993954471	0.0163679635411373
Merged-chr17-78916543-4	chr17	78916442	78916642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177402)	promoter-TSS (NM_001177402)	43.0	NM_001177402	68554.0	Mm.391820	NM_001177402	ENSMUSG00000062691	Cebpzos	1110001A16Rik	CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand	protein-coding	7.16473993730456	6.9511376216603	6.95504834000715	6.85487487298238	6.97636472601578	7.21752070779528	6.6825931721071	6.63245182412061	-0.112056466294371	0.610211661916147	0.831564096406981
Merged-chr2-52420162-3	chr2	52420046	52420246	+	689.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182994, intron 1 of 5)	intron (NM_182994, intron 1 of 5)	4728.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	3.29828040665094	3.28315535354779	3.35568908556367	3.15597146437307	3.32203684247391	3.52512022766913	3.39641610347172	3.23750967702453	0.379341141137238	0.466503074428076	0.746420287776482
Merged-chr2-60948015-3	chr2	60947912	60948112	+	921.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	15192.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	3.79174853428976	3.51155214863281	3.64430006561001	3.82985996900924	3.56803087043525	3.39766731863153	3.57700635269968	3.83530364857481	-0.322403385977067	0.514626246637804	0.777149563887325
Merged-chr4-93335497-4	chr4	93335404	93335604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026954)	promoter-TSS (NM_026954)	7.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	6.8848863758558	6.49702800946912	7.33219200543134	6.90013200940084	6.52923545886661	6.91004142874521	6.57527819758138	6.65230505754305	-0.372466585916406	0.127260340781728	0.396918276733565
Merged-chr3-52990271-3	chr3	52990183	52990383	+	869.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026225, intron 15 of 18)	intron (NM_026225, intron 15 of 18)	26940.0	NM_026225	67542.0	Mm.249548	NM_026225	ENSMUSG00000027742	Cog6	4933405E16Rik|AU018618|mKIAA1134	component of oligomeric golgi complex 6	protein-coding	3.27264023588227	4.21460079639989	3.47831377211699	3.73223166981088	3.73985439981406	3.65843690043715	4.02099949570957	3.81211968485524	0.251441453130088	0.650089946747651	0.853039400580308
Merged-chr17-17374179-4	chr17	17374061	17374261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025934)	promoter-TSS (NM_025934)	-171.0	NM_025934	67045.0	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2	protein-coding	8.41255226802775	8.29314513134173	8.16752874055699	8.24123531900416	8.34889145492063	8.33899042821463	8.40478751092496	8.01799846931406	0.00954700894218174	0.954133401662938	0.983682715111683
Merged-chr11-94161442-4	chr11	94161352	94161552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50002.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	6.44588615019663	6.6736416045863	6.32470301660177	6.49156264686511	6.13972021066987	6.21554262825328	6.3104574003333	6.12198596085201	-0.445620252918728	0.0459156587589956	0.21993476950246
Merged-chr2-152081975-4	chr2	152081864	152082064	+	972.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001160410, exon 1 of 2)	5' UTR (NM_001160410, exon 1 of 2)	435.0	NM_001160410	545474.0	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	5.18682688919218	4.73511228317797	5.24729078320153	5.17536385706167	5.05352395716423	4.70926524522747	5.24962900155862	5.30043395940229	-0.00509084345978063	0.98797522939957	0.995370064932717
Merged-chr18-36196210-2	chr18	36196110	36196310	+	697.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167891, intron 1 of 9)	intron (NM_001167891, intron 1 of 9)	950.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	3.12204918837878	2.90246626564685	3.12246452713793	2.72135127175856	3.0967410840339	3.40670956725397	3.05002711389063	3.28875418160944	1.00330155994696	0.0919429928632263	0.331623169614429
Merged-chr9-82871598-4	chr9	82871511	82871711	+	859.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081216, exon 40 of 40)	exon (NM_001081216, exon 40 of 40)	41805.0	NM_001168240	65099.0	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	3.9709332186168	3.82302723455809	4.44855014034593	4.45140901840287	4.1921256676308	3.79932100611858	4.10241498419363	4.25092606585699	-0.282553088689631	0.542620911617026	0.793917205662524
Merged-chr3-30600374-3	chr3	30600270	30600470	+	724.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029690)	promoter-TSS (NM_029690)	-500.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	3.7715625747344	3.57741576202744	3.38861339653946	3.38285169378551	3.97553356487476	3.73937648061899	3.55303572167089	3.50828615298503	0.574506454228809	0.254792330273265	0.566296247232509
Merged-chr9-25175392-4	chr9	25175281	25175481	+	877.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23600.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	4.50985014408626	4.24493088652904	4.29785279013036	4.51907547963245	4.5337594354303	4.42537037774061	4.45028129160097	4.34064405769961	0.0844034559322044	0.821559366054615	0.931745543040646
Merged-chr5-147527977-4	chr5	147527870	147528070	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 11 of 18)	intron (NM_028291, intron 11 of 18)	97814.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	5.2361111344284	4.87714613361578	5.17313877968728	5.40425557945501	5.31831465921932	5.5829079736356	5.08116711256675	5.29412863387431	0.23405149595624	0.460216293648443	0.742490742225721
Merged-chr16-21652868-4	chr16	21652801	21653001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001001881, exon 2 of 2)	3' UTR (NM_001001881, exon 2 of 2)	41764.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	5.49574330897251	5.34319282401072	5.57831162647626	5.82646017117155	5.63306255971074	5.4275021684569	5.62635923163636	5.49285362708564	-0.0658387230690816	0.816272484742502	0.929287083544371
Merged-chr5-139484571-4	chr5	139484467	139484667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159908)	promoter-TSS (NM_001159908)	-76.0	NM_001159908	100494.0	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	8.16037078310709	8.29614709246716	7.98200517539456	7.98331408166044	8.01410074010536	8.12445708076711	7.79863765056755	7.92744783463298	-0.178075548180701	0.302934454359556	0.615482556585475
Merged-chr2-58286949-4	chr2	58286845	58287045	+	886.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040365)	TTS (NR_040365)	10166.0	NR_040365	100502932.0	Mm.417207	NR_040365	ENSMUSG00000086995	Gm13544	-	predicted gene 13544	ncRNA	4.14993290654146	4.19651893783858	4.38067964598708	4.54825421748249	4.28424452919371	4.22512933996871	4.08241115534121	4.80218513965545	0.0898814089863876	0.833327331047665	0.936256874087684
Merged-chr1-178329220-4	chr1	178329110	178329310	+	820.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016805, exon 14 of 14)	3' UTR (NM_016805, exon 14 of 14)	8605.0	NM_016805	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	4.07700173357794	3.59565563234234	4.1208261909727	3.85529675477634	4.00283486823182	4.06114152291584	3.65375070585519	4.03041450065617	0.0730940344154245	0.875028348257695	0.953005015693282
Merged-chr2-62635491-3	chr2	62635387	62635587	+	799.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027835, intron 2 of 15)	intron (NM_027835, intron 2 of 15)	10768.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	3.5764850837904	3.5596398609607	3.38273273120606	3.92663532357057	4.11138440789696	3.69461248455533	4.01260592673842	4.07022650324151	0.963713872773972	0.0594763216881527	0.257087818147873
Merged-chr8-34765074-4	chr8	34764970	34765170	+	934.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42540.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	3.95286590119481	3.70800794846516	4.10266926628994	4.06396122255798	4.41310407004661	3.96557593050802	4.25819566122048	4.3544014682137	0.751568125671776	0.0796278763865819	0.305609436715222
Merged-chr2-24315621-4	chr2	24315521	24315721	+	787.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-21239.0	NM_031167	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	3.815260618677	3.75805599132408	3.76452406932355	3.92193490534596	3.83878460720942	3.77237497286839	3.80018147592478	3.86282441370951	-0.014683118915016	0.973531052587232	0.990540947237557
Merged-chr4-135494610-4	chr4	135494491	135494691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028995)	promoter-TSS (NM_028995)	-13.0	NM_028995	74552.0	Mm.26548	NM_028995	ENSMUSG00000028803	Nipal3	9130020G22Rik|AI480660|Npal3	NIPA-like domain containing 3	protein-coding	6.02033202464602	5.95028220739691	5.97947797013218	5.94737325922695	5.85907057840382	5.54181192239866	5.76687475921501	6.05761707233532	-0.237397231003233	0.346694876034619	0.654902857707284
Merged-chr7-80947747-4	chr7	80947630	80947830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019951)	promoter-TSS (NM_019951)	-180.0	NM_019951	56529.0	Mm.43760	NM_019951	ENSMUSG00000025724	Sec11a	1810012E07Rik|18kDa|Sec11l1|Sid2895p|Spc18|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding	6.53459495092421	6.66147503942471	6.85550908962743	6.63804344917707	6.43963113024469	6.66169592183866	6.53490324793081	6.5144306335218	-0.202879459174552	0.332166565051458	0.643197147196544
Merged-chr5-147071237-1	chr5	147071137	147071337	+	721.666687	f0_balb.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	5335.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	3.38361324902187	3.36311650358643	3.38414889096534	3.23172762492554	2.79996215070645	2.81172082301278	2.98284097909572	2.70302118002194	-2.3571637410053	0.000481674538343861	0.00749893087593562
Merged-chr18-44828521-4	chr18	44828424	44828624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163013)	promoter-TSS (NM_001163013)	-141.0	NM_001163013	240255.0	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	6.8705377105246	6.56064941086008	7.10922634583344	6.87838360333386	6.39302208326235	6.63496990373615	6.60882422152685	6.85372423968904	-0.343002891389423	0.130128338406279	0.401547403300569
Merged-chr9-100570784-3	chr9	100570699	100570899	+	912.276184	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101483, intron 1 of 1)	CpG	286.0	NM_001101483	245020.0	Mm.236289	NM_001101483	ENSMUSG00000070287	Slc35g2	Gm519|Tmem22	solute carrier family 35, member G2	protein-coding	3.83463549130246	4.10579615373897	4.21405778599179	4.36254669188731	3.66155077189266	3.71371488704685	3.92445566798626	4.21132434736037	-0.705483510843784	0.133997279379658	0.407615383091785
Merged-chr15-96566986-4	chr15	96566847	96567047	+	915.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75015.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	4.11321492164928	4.1985829684856	4.29994644115062	4.27851993203536	4.39738011443691	4.23860484660946	4.19203834838697	4.45944068649726	0.246167365911926	0.524188157125481	0.782789831107843
Merged-chr4-152214276-3	chr4	152214163	152214363	+	821.116638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133348, intron 2 of 8)	intron (NM_133348, intron 2 of 8)	14419.0	NM_001146058	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	3.23056823509764	3.57061063338736	3.47334540962077	3.55073243232466	3.30425223559816	3.53113246036291	3.56464050616437	3.62725898458643	0.12322209818834	0.810684450082706	0.926854276252049
Merged-chr17-84186414-8	chr17	84186230	84186430	+	824.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001001806, exon 2 of 2)	exon (NM_001001806, exon 2 of 2)	1617.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	3.92638315554034	3.54833469557731	3.74210355028673	3.32219529973142	3.67337772609174	3.96010659639471	3.45336697081766	3.46419978867701	0.0274466563096212	0.958485722411302	0.985199584834632
Merged-chr13-113615735-5	chr13	113615653	113615853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	2811.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	7.2890242454119	7.15434849804492	7.79021685098636	7.53793003073354	7.02388781895685	7.35529832844842	7.59094916870733	7.59825057856415	-0.0791776292627563	0.727492888266564	0.891505430861744
Merged-chr10-130247233-3	chr10	130247121	130247321	+	851.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	32917.0	NM_001329489	11923.0	Mm.10695	NM_007501	ENSMUSG00000048015	Neurod4	AI846749|ATH-3|Atoh3|MATH-3|Math3|bHLHa4	neurogenic differentiation 4	protein-coding	4.45646291581307	4.19072450077488	4.59828660546392	4.27294108674232	4.03823334762493	3.96905821336448	3.77135190984785	4.29525336611545	-0.886398174878033	0.0408163643466753	0.204279847970187
Merged-chr11-4714945-3	chr11	4714846	4715046	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026015, intron 1 of 5)	intron (NM_026015, intron 1 of 5)	10290.0	NM_001356390	67178.0	Mm.271056	NM_026015	ENSMUSG00000009076	Zmat5	2610510L01Rik|D11Bwg0572e|D11Bwg1548e	zinc finger, matrin type 5	protein-coding	4.16111575108479	3.8860763900002	3.91384096709976	3.86381651584155	5.1127509151288	4.81921316632251	5.33054032515756	5.40013554897203	2.70329826945046	1.45631678526013e-12	1.51770384272373e-10
Merged-chr1-37872269-4	chr1	37872141	37872341	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037918)	promoter-TSS (NM_001037918)	35.0	NM_001037918	623661.0	Mm.138000	NM_001037918	ENSMUSG00000037216	Lipt1	EG623661	lipoyltransferase 1	protein-coding	5.46597504147933	5.2124251836606	5.23474601931744	5.39175719394461	5.24353750316263	5.47074123180766	5.49090955351458	4.94757679969349	-0.055339761664616	0.855083066458346	0.945424485789793
Merged-chr2-168112150-3	chr2	168112054	168112254	+	728.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31150.0	NM_021409	58220.0	Mm.292834	NM_021409	ENSMUSG00000044641	Pard6b	AV025615|Par6b	par-6 family cell polarity regulator beta	protein-coding	3.0359523957759	2.71059646832733	2.50728191624417	2.61449565538838	3.00098325874734	3.03297789744854	2.85132046400943	2.92104870284422	1.02444778066636	0.116444579082791	0.377518045754225
Merged-chr13-83572151-4	chr13	83572044	83572244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347566, intron 1 of 10)	intron (NM_001347566, intron 1 of 10)	-1463.0	NM_001347577	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	7.48473132697121	7.27938862278919	7.50451618581848	7.8536682717804	7.43866831540239	7.2608414110209	7.76714281036428	7.22308359995069	-0.152615238637088	0.483560920587287	0.757887046485909
Merged-chr11-109361773-8	chr11	109361681	109361881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038097, intron 1 of 1)	intron (NR_038097, intron 1 of 1)	-1013.0	NM_010303	14674.0	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	5.99150231043633	6.38210283632925	6.11880151030717	5.30749445085712	6.32626141951133	6.19064057502953	5.79771661625658	6.17302782518547	0.220902362137945	0.483578360027331	0.757896426113824
Merged-chr14-73169537-4	chr14	73169431	73169631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 10 of 14)	Lx3_Mus|LINE|L1	26746.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	5.18483219866135	5.22108980839098	5.50251153001346	4.96044808428864	5.35657125450959	5.39254774119738	5.31299419059736	5.24591189533205	0.212478673412095	0.483157318643495	0.757653604981722
Merged-chr4-6371511-4	chr4	6371507	6371707	+	905.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	URR1A|DNA|hAT-Charlie	5927.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	4.10777604219927	4.37819837914649	4.24557320651326	4.41636084942138	4.28752651254385	4.0213260978629	3.82761368965833	4.19887981133519	-0.494000737105335	0.243271862467943	0.554283485360621
Merged-chr12-21568692-3	chr12	21568598	21568798	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-151262.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	3.10194961569076	3.10276383240943	3.92946602982472	3.68008776057965	2.58167225828368	2.76456187507554	3.02574766747125	2.96591973986674	-2.93943019412979	0.000202286506067817	0.00367216302356571
Merged-chr2-32708832-3	chr2	32708731	32708931	+	685.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130860, intron 6 of 6)	ORR1F|LTR|ERVL-MaLR	3953.0	NM_130860	107951.0	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	3.65857805839132	4.08823173948995	3.65905055295031	3.85641364125478	3.81785267390036	3.99093142564416	3.70074784569897	3.81839557590419	0.00168959653358938	0.997086908379075	0.998859677649499
Merged-chr1-89942223-3	chr1	89942123	89942323	+	832.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11047.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	3.79077877591401	3.50278901095011	4.11541438365885	3.65620544897942	3.32134808414789	3.18341264897713	3.34360348101255	3.64222525825293	-1.31196211092356	0.0177688434605297	0.118147455271093
Merged-chr14-73049130-4	chr14	73049025	73049225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133720)	promoter-TSS (NM_133720)	-11.0	NM_001162412	70086.0	Mm.158324	NM_133720	ENSMUSG00000033470	Cysltr2	2300001H05Rik|CYSLT2R|Cltr2|Cyslt2	cysteinyl leukotriene receptor 2	protein-coding	6.30206599539415	6.32530235668344	5.61132683158829	6.39455684118679	6.56899735078967	6.4788223193068	6.4093952722719	6.14217431071803	0.309276803919454	0.249268474617509	0.560328612484111
Merged-chr9-72987863-3	chr9	72987759	72987959	+	912.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359295, intron 1 of 9)	intron (NM_001359295, intron 1 of 9)	2355.0	NM_001286544	72278.0	Mm.268475	NM_028181	ENSMUSG00000034563	Ccpg1	1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e	cell cycle progression 1	protein-coding	4.75933073215116	4.21294207065704	4.11673681931043	4.55570457099788	4.54234407130746	4.13293811601358	4.45807547350072	4.11438165350689	-0.247596384087002	0.561536642000027	0.80494560024742
Merged-chr13-49421178-4	chr13	49421093	49421293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199056)	promoter-TSS (NM_199056)	-30.0	NR_075085	75678.0	Mm.390586	NM_199056	ENSMUSG00000021385	Ippk	1810043M15Rik|InsP6	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	protein-coding	7.69983887409714	7.71908191086131	7.28822906241009	7.76545497732941	7.64744641535298	7.69819632646576	7.58117099231689	7.21466702582279	-0.115786088475939	0.565721505674553	0.807708329369941
Merged-chr18-36559886-4	chr18	36559804	36560004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175375)	promoter-TSS (NM_175375)	-699.0	NM_175375	108857.0	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	6.90244711412282	7.00909537626693	6.50820434301522	6.68605109630572	6.86063352877024	6.99926876417337	6.7601201179961	7.02281285826792	0.174537655584519	0.412704373913608	0.707787832411092
Merged-chr18-10136594-4	chr18	10136522	10136722	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009071, intron 4 of 32)	intron (NM_009071, intron 4 of 32)	45170.0	NM_009071	19877.0	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	3.6277170600087	3.55925174857088	3.94608541696169	4.32186664106087	4.01086816487722	3.74609659194955	3.67297665099661	4.03414369878619	-0.106902710935544	0.83689313682203	0.938097898989847
Merged-chr16-36941362-4	chr16	36941260	36941460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008225, intron 3 of 13)	intron (NM_008225, intron 3 of 13)	6377.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	6.81068535183387	6.80007408330996	6.69397968441317	6.77026984996765	7.03687092026832	7.12126476646569	6.92259695664166	6.67368495531132	0.254404947846296	0.208622606475356	0.513007192521551
Merged-chr7-80404307-4	chr7	80404201	80404401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081454, intron 1 of 15)	intron (NM_001081454, intron 1 of 15)	1135.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	8.30739526003614	8.56138861551138	8.28641245383479	8.22847672876395	8.1696942222497	8.49203289460264	8.05334111719063	8.15675180494502	-0.158466355287712	0.367332199035806	0.671762463264211
Merged-chr4-136034679-2	chr4	136034564	136034764	+	603.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13015.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	2.88976761300936	2.83850551560185	2.94732192103475	2.82286870815449	2.67454722461982	2.87398755469773	2.55309536166658	2.76623397595167	-0.735436698045101	0.253748096722403	0.565032649092237
Merged-chr15-76312497-3	chr15	76312398	76312598	+	918.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14_RN|LTR|ERV1	-5253.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	3.89687000876725	4.06192219521304	4.08358804869812	3.92966711886226	4.05407459380974	3.79725003077204	3.77862638475434	3.89518931797324	-0.270326579210924	0.536663448755829	0.790562048448667
Merged-chr5-90777780-4	chr5	90777670	90777870	+	927.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5335.0	NM_019932	56744.0	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	5.24080979706563	4.53291404658219	5.18920295382921	4.89456550347339	4.5401695211743	4.52415048038062	4.79274834284429	4.28508902090638	-0.919278966536087	0.0176290405495109	0.1175032753323
Merged-chr4-3656446-4	chr4	3656361	3656561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040643)	promoter-TSS (NR_040643)	-45.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	5.9810737055214	6.00286775362308	6.19178234156989	5.66631276564424	6.24366110795576	6.30800296720752	6.43475203592223	6.18734237741511	0.527961612356609	0.0325379456401643	0.176646970690356
Merged-chr4-141407062-3	chr4	141406963	141407163	+	877.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019701, intron 16 of 19)	intron (NM_019701, intron 16 of 19)	-8357.0	NM_024412	12733.0	Mm.167900	NM_024412	ENSMUSG00000033770	Clcnka	C75963|CLC-K1|Clcnk1	chloride channel, voltage-sensitive Ka	protein-coding	3.81699479970103	3.78421264342116	3.49845426204873	3.54604335312838	3.72559523141234	3.48654672807445	3.70434804431125	3.86138006294383	0.124553806578486	0.795558543604136	0.920897975671128
Merged-chr12-118302152-4	chr12	118302075	118302275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009239)	promoter-TSS (NM_009239)	-735.0	NM_001166385	20688.0	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	9.82112743065014	9.87370605776367	10.0965986628841	10.1462638687458	9.72874265850238	9.62048778281863	9.96549771481867	9.55392782630324	-0.324426043391717	0.0431771776175805	0.211471019448274
Merged-chr2-167538038-4	chr2	167537958	167538158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011427)	promoter-TSS (NM_011427)	-137.0	NM_011427	20613.0	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding	5.93055802124807	6.02649920910281	5.58683019617194	6.26001550720667	6.10487315434004	6.50100077556944	6.09388873987221	5.92737565476124	0.276499690774729	0.318893445825391	0.63079470265689
Merged-chr6-48504359-4	chr6	48504252	48504452	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015597)	promoter-TSS (NR_015597)	13.0	NR_027808	58894.0	Mm.31983	NR_015597	ENSMUSG00000107476	Zfp862-ps	4732460K03Rik|AI448302|Zfp862|mKIAA0543	zinc finger protein 862, pseudogene	pseudo	5.20896000086251	5.23162527891397	5.43117724581005	4.96765273019507	5.70323402034783	5.60682580680235	5.85847957424307	5.75743644341591	0.934393323955015	0.000877184732685779	0.0121166567218787
Merged-chr5-5367715-4	chr5	5367597	5367797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	12554.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	6.25420996011023	6.1005441303507	6.10501075102347	6.42528257896221	5.96013204243421	5.86094223283448	5.53803243465395	5.75907556693222	-0.697877153074756	0.00627520921059913	0.0560782318143422
Merged-chr7-127588234-4	chr7	127588113	127588313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172281)	promoter-TSS (NM_172281)	382.0	NM_001033040	233899.0	Mm.25220	NM_001033040	ENSMUSG00000057176	Ccdc189	Gm166	coiled-coil domain containing 189	protein-coding	6.91682599335232	6.9777310186799	6.60918591427027	6.6084611432563	7.08310693867204	7.0943971113301	6.98278231082016	6.85989680773109	0.320453571359503	0.122207714155307	0.387413444121253
Merged-chr11-70791780-4	chr11	70791672	70791872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 4 of 4)	intron (NM_001045526, intron 4 of 4)	20789.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	6.5582806119479	6.07050026834132	6.1346726046563	5.88260870943327	6.07405514243545	6.22720828662784	5.90779972507434	6.20865591804009	-0.0958458914193059	0.715926366388048	0.886371813543908
Merged-chr1-33982176-3	chr1	33982064	33982264	+	839.5166630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 3 of 102)	intron (NM_001276764, intron 3 of 102)	-29661.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	3.30505283983649	3.33591472203166	3.52101405037861	3.49539672245828	2.97512982529569	3.00737891991247	3.349629034874	3.65917571248525	-0.503417049524018	0.39924673486406	0.697288631090116
Merged-chr14-61498962-2	chr14	61498862	61499062	+	662.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_045714, intron 2 of 2)	intron (NR_045714, intron 2 of 2)	6274.0	NR_045714	75349.0	Mm.233613	NR_045714	ENSMUSG00000115656	4930556J02Rik	-	RIKEN cDNA 4930556J02 gene	ncRNA	3.06060272076157	3.01337176241516	3.12055017299098	3.06286485020475	2.8909186806703	3.17074752867526	3.05015895110562	3.33087688930255	0.206556899166283	0.7199531249573	0.888028373825666
Merged-chr5-140322010-2	chr5	140321910	140322110	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010752)	promoter-TSS (NM_010752)	388.0	NM_001356585	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	4.62383500844205	4.61571181131429	4.66202693967242	4.46106170348308	4.67476003222442	4.45508339436567	4.30789867547545	4.54328720105517	-0.161419835394576	0.658113616745633	0.857677183558236
Merged-chr1-165741841-4	chr1	165741730	165741930	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21928.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	4.63683283883885	5.54370520695588	5.43134054734759	4.67181600462077	5.26477954903987	5.03546473680576	5.05292420668745	5.32040076193178	0.0821375300715449	0.82958904097813	0.934605630613354
Merged-chr6-8339658-4	chr6	8339550	8339750	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302354, intron 2 of 3)	intron (NM_001302354, intron 2 of 3)	80362.0	NM_001302353	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	5.49600156816506	5.50155588344962	5.65585980703076	6.14548671863028	5.40022885047317	5.3584360905495	5.22301617404293	5.65184526020208	-0.569141511934317	0.0681797097391443	0.278745752988085
Merged-chr8-22496929-3	chr8	22496842	22497042	+	800.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011394, intron 1 of 10)	ORR1C2|LTR|ERVL-MaLR	-20063.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	2.26290703921884	2.21773740214922	2.26307444526856	2.08671044412861	3.18849271834067	2.75454530701091	2.69484065106888	2.98744688677015	4.82335152614137	1.52485940272874e-07	6.30301785289366e-06
Merged-chr4-155481510-4	chr4	155481380	155481580	+	962.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9881.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	4.81559046254851	4.9435142428391	4.44583430367842	4.89617250905058	5.0621439690744	4.71428961859294	4.56080553488465	4.57858716334296	-0.0793386460621363	0.830176457386849	0.934844759338337
Merged-chr11-83619212-3	chr11	83619116	83619316	+	962.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 5 of 8)	intron (NR_036453, intron 5 of 8)	-26129.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	4.35363858642138	4.09222583681321	3.72852426679348	4.16914925813221	3.7122889178961	3.66178827381382	3.92396168799888	3.78280269093114	-0.942361350484918	0.0432825506342622	0.211659782873181
Merged-chr9-62876270-6	chr9	62876093	62876293	+	862.922241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001102468)	TTS (NM_001102468)	-14169.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	3.32934035772712	3.62070754917045	3.38873021548727	3.55993055673918	3.24518271323321	3.31445533120039	3.53633288400482	3.54899753912787	-0.248064664337314	0.634245126846152	0.845095562869841
Merged-chr4-150176714-3	chr4	150176604	150176804	+	609.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	24431.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	3.55846491606735	3.47987884995627	3.44363572304953	3.49514352404638	3.8406774966559	3.67518541383058	3.69885853723282	3.61094998564112	0.694184194232954	0.139793103944045	0.415775252617132
Merged-chr13-54071892-6	chr13	54071823	54072023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027324)	promoter-TSS (NM_027324)	78.0	NM_027324	14057.0	Mm.134191	NM_027324	ENSMUSG00000021474	Sfxn1	2810002O05Rik|A930015P12Rik|f	sideroflexin 1	protein-coding	5.42856968042292	5.20740388487771	5.42950482505969	5.53867625966752	6.21779584673257	5.83129110527793	5.90338012406201	5.82124652973557	0.906757245669801	0.000888199514525739	0.0122521614814782
Merged-chr3-108164919-4	chr3	108164815	108165015	+	894.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9983.0	NM_001305461	229714.0	Mm.73666	NM_175470	ENSMUSG00000046793	Gpr61	-	G protein-coupled receptor 61	protein-coding	4.33124647026892	4.11083198670133	3.8628261697653	4.16027272215765	4.44762368394365	4.50494114681667	4.43626348946447	4.73731908089908	0.958460862727334	0.0150421858656222	0.105036809600555
Merged-chr2-18976405-4	chr2	18976304	18976504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	ORR1F|LTR|ERVL-MaLR	21717.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	6.12396658973619	5.87192873139099	6.12504995870899	6.36681988994757	5.8927976325537	5.82640372997796	5.96889517052556	6.2527266789893	-0.239448436534726	0.353034419869516	0.659908006299858
Merged-chr18-68059578-4	chr18	68059471	68059671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	126398.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	5.09274288890295	5.10951319249945	5.12594645223166	5.27969696924331	4.97068022133048	4.97823256729686	5.27771648735816	4.83768041837774	-0.265344700402979	0.39661471558618	0.695284556331027
Merged-chr8-94601321-2	chr8	94601238	94601438	+	766.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026274)	promoter-TSS (NM_026274)	388.0	NM_028221	102122.0	Mm.250425	NM_028221	ENSMUSG00000031774	Fam192a	1700001O11Rik|2310065K24Rik|AI596259|Nip30	family with sequence similarity 192, member A	protein-coding	4.21864605245242	3.88804465564013	4.01127770629089	3.92327680997611	3.8605435754177	3.63878417443242	3.9007083916388	3.70395606855881	-0.639372668853749	0.159331820543682	0.446799808871371
Merged-chr6-127146099-4	chr6	127146003	127146203	+	834.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009829, exon 3 of 5)	exon (NM_009829, exon 3 of 5)	-3286.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	4.28564074324914	4.23631988334021	3.92088260523528	3.991650868321	3.84476335105903	3.93229492679528	4.34230976690663	3.8648551807423	-0.272958616837838	0.540624065893129	0.792829019929487
Merged-chr4-62764240-3	chr4	62764152	62764352	+	774.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90278.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	3.68615851615456	3.63309396895214	3.46502107846214	3.5744002652113	3.528619331599	3.51788653887329	3.81385896404118	3.82854060955191	0.269350832903541	0.574904983959875	0.812637259775993
Merged-chr4-34269320-3	chr4	34269227	34269427	+	946.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-219260.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	3.98535205013748	4.04101527810906	4.74435644334745	4.63534410341145	3.54601099934935	3.75585605938873	3.86245037586685	4.03428296327656	-1.58800234003281	0.0013795832720848	0.017466777961608
Merged-chr14-72708842-4	chr14	72708733	72708933	+	649.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 1 of 25)	intron (NM_207636, intron 1 of 25)	1170.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	4.26554392983326	4.15660506161444	4.26622326280579	4.21137170854743	4.18773959897991	3.89676389900535	3.92785546864005	3.77461106445089	-0.67216344104958	0.118305785091537	0.380450324253661
Merged-chr8-91070072-4	chr8	91069970	91070170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282000)	promoter-TSS (NM_001282000)	13.0	NM_001282000	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	6.94802895501257	7.22828081441633	6.76001022500673	7.14226022354686	7.46578693806928	7.45678396090799	7.39004145008643	7.07267605278929	0.429895370241826	0.037292489949777	0.192630053855964
Merged-chr8-56896533-3	chr8	56896434	56896634	+	815.211121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	345400.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	4.32872341588089	4.09660598768777	4.32947412820049	4.36182983382767	3.34653601368227	3.54803319510991	3.48531268432391	3.49556040093654	-2.63276135204811	3.85735240679615e-07	1.46589688715079e-05
Merged-chr4-42902332-4	chr4	42902238	42902438	+	896.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14268.0	NM_001355693	230085.0	Mm.240965	NM_172690	ENSMUSG00000036062	Phf24	GINIP|N28178	PHD finger protein 24	protein-coding	4.4404306634605	5.26799803376303	4.69680010485524	4.44721989411116	4.5858708509458	5.20410985263328	4.22086717433532	4.48448623475079	-0.178577948344932	0.691440794040744	0.874516938750953
Merged-chr11-59223004-3	chr11	59222913	59223113	+	639.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	5149.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	2.8467078265954	3.25146084368318	2.84694694242063	3.31274219435894	3.29006921825896	3.16143847367015	3.3714946255196	3.17201031077554	0.596583502844317	0.339819079561266	0.648941117272324
Merged-chr7-80993661-6	chr7	80993518	80993718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178707)	promoter-TSS (NM_178707)	-66.0	NM_178707	233410.0	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	A730014M16Rik|Znf592	zinc finger protein 592	protein-coding	6.17357256599875	5.79051444898116	5.90791229865673	5.92407745451671	5.82958689852701	6.01323776093534	6.14299262359991	5.67941558701606	-0.0439481448012273	0.864311424306314	0.949117124156484
Merged-chr7-80084700-3	chr7	80084568	80084768	+	933.177795	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 2 of 4)	intron (NM_175433, intron 2 of 4)	-9411.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	4.06650177717624	3.86013645283209	3.87982998926788	3.95542879323287	3.84558716680106	3.89414254135284	3.81307012224826	3.97452620142999	-0.17295216229748	0.688347144704539	0.872728425878073
Merged-chr1-132341911-4	chr1	132341810	132342010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25785.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	7.46187573209061	7.77633546374939	7.60791691382805	7.76168995449277	7.4000761336864	7.44388854711996	7.55341714149595	7.27234092391643	-0.324541223504666	0.0722302259160771	0.288805410261709
Merged-chr14-45221221-2	chr14	45221121	45221321	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027518, intron 1 of 6)	intron (NM_027518, intron 1 of 6)	1504.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	3.04714526814486	2.77844303755504	2.87400410133432	2.58426914310977	3.12091515689682	2.91866985448449	2.66639472810337	2.80922842909317	0.312070077224797	0.635712309364077	0.845870456193819
Merged-chr14-54768528-4	chr14	54768420	54768620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	13366.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	7.73033212912552	8.03518941759971	8.05201693925316	7.66149045983669	7.74083187423974	8.00286725691037	7.83175864770442	7.33974779061169	-0.165915898459839	0.421243291431771	0.713877513742286
Merged-chr19-8871520-4	chr19	8871412	8871612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362044)	promoter-TSS (NM_001362044)	-36.0	NM_146093	225896.0	Mm.27839	NM_146093	ENSMUSG00000071655	Ubxn1	2B28|4930455J02Rik|D19Ertd721e|T25529|mY33K	UBX domain protein 1	protein-coding	7.51957067207827	7.65443232898077	7.25837417013303	7.41747610859068	7.57449785895673	7.6887910579552	7.38950576574602	7.5337463518945	0.106312111332039	0.562892704878005	0.805927740950101
Merged-chr8-105826646-6	chr8	105826584	105826784	+	893.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145824, intron 1 of 13)	intron (NM_145824, intron 1 of 13)	666.0	NM_145824	74334.0	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding	3.36008078032981	3.37819121836035	2.9740595883043	3.24391279847806	3.38467333655666	3.63470147194414	3.29105843876994	3.35869671170575	0.607203186959662	0.265264256590948	0.577001515467012
Merged-chr16-4003821-4	chr16	4003712	4003912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2134.0	NM_177472	52864.0	Mm.29935	NM_177472	ENSMUSG00000039738	Slx4	AI256635|AI426760|Btbd12|D16Bwg1016e	SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)	protein-coding	8.23700169112093	8.07569684942436	8.15483636017401	8.1603661018435	8.206669453513	8.30744005843938	8.25580448681038	8.14944343908805	0.0928024884207062	0.54067145956308	0.792856338619265
Merged-chr2-103488992-4	chr2	103488891	103489091	+	950.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3838.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	4.79258566401639	4.54835266435153	4.45759620907513	4.65404221224951	4.95864387333445	5.1037775792016	4.94145659861118	4.75272428539375	0.664662975321027	0.0481397760819764	0.226398488387116
Merged-chr5-115493152-3	chr5	115492982	115493182	+	930.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8598.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	3.62290359349928	3.61579032727909	3.20450529412935	3.03013525345118	3.22884301559343	3.25394051307645	2.99624548546661	3.26323549608414	-0.728420073880391	0.223476422132352	0.531574263165309
Merged-chr7-19740521-2	chr7	19740421	19740621	+	961.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008990, intron 1 of 8)	intron (NM_008990, intron 1 of 8)	9052.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	3.22461882474976	3.28194467618381	3.15939302283951	3.39799909853732	3.30506980520796	3.40108515987444	3.76898498271624	3.55980765561902	0.815659638795573	0.128635834416501	0.399065989275284
Merged-chr4-58504821-4	chr4	58504724	58504924	+	819.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	-5421.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	4.23994855378569	4.3535339565467	4.72913375661244	4.19156415777551	4.84343967890533	4.31558687228797	4.52683325920641	4.62089264578793	0.498750296316331	0.208881994663965	0.51324523526683
Merged-chr8-109706002-2	chr8	109705902	109706102	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029468)	promoter-TSS (NM_029468)	-17.0	NM_029468	75871.0	Mm.180410	NM_029468	ENSMUSG00000031728	Zfp821	4930566A11Rik|Znf821	zinc finger protein 821	protein-coding	4.64356466789879	4.16686312623301	5.08710059702266	3.8828410385201	4.34873442739087	4.78000100317536	4.4620966675365	4.67849279212788	0.114006243142439	0.808000445550766	0.92593795364266
Merged-chr6-8509812-4	chr6	8509716	8509916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040452)	promoter-TSS (NR_040452)	216.0	NM_133236	170772.0	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	7.05998320372882	7.32923218951341	7.4865935517575	7.37183339060241	7.58271444713392	7.468915046352	7.30690517914423	6.82043332278406	0.0116448513727568	0.958561758770182	0.985248919859626
Merged-chr4-142091270-4	chr4	142091164	142091364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6960.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	6.91374782370313	6.93097148272329	7.30804264899808	7.4156278091013	6.5020135808503	6.47894824350617	6.72625727668209	7.12744561355952	-0.607575211888249	0.0129817691415166	0.0948890270819478
Merged-chr17-17883898-4	chr17	17883803	17884003	+	978.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013521)	promoter-TSS (NM_013521)	36.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	4.79963849809489	5.09464807823699	4.47021362782418	4.10975182839515	4.74798000705616	4.82248750147022	5.25212836715728	4.46740987495534	0.38305865856872	0.37422336805342	0.67760989861802
Merged-chr3-53027540-3	chr3	53027441	53027641	+	776.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10318.0	NM_026225	67542.0	Mm.249548	NM_026225	ENSMUSG00000027742	Cog6	4933405E16Rik|AU018618|mKIAA1134	component of oligomeric golgi complex 6	protein-coding	3.44924792307246	3.5312890400076	3.76802669480536	3.5930110385029	3.88843135475678	3.36828769384197	3.55099665713021	3.71797561878234	0.206354562228479	0.681714762441539	0.869601703867855
Merged-chr17-71834505-3	chr17	71834400	71834600	+	989.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271483, intron 13 of 16)	intron (NM_001271483, intron 13 of 16)	52553.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	4.30486195427304	4.1624344604373	4.34158633657161	4.72614348002949	2.93663739385703	3.20438775707526	3.15594350131356	3.1639149944508	-7.22110310095492	2.87088473722437e-11	2.3956237363528e-09
Merged-chr15-6708310-4	chr15	6708209	6708409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030168)	promoter-TSS (NM_030168)	-72.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	6.05937992205195	6.00022781586467	5.79022164135666	5.90954717278869	6.28283008151524	5.86311869882299	5.78561023489351	5.81096401145092	0.04217595165106	0.872028700677256	0.951877155217282
Merged-chr1-138275125-4	chr1	138275025	138275225	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177397, intron 1 of 2)	intron (NM_177397, intron 1 of 2)	1387.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	4.79171507628893	4.61441387110441	4.8646005007568	5.51128918102457	4.5305265500574	4.48782988896409	4.80580993285447	4.58935175683181	-0.843209184579079	0.0346734385617909	0.184333086350499
Merged-chr8-94363504-4	chr8	94363396	94363596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 24 of 24)	intron (NM_019415, intron 24 of 24)	-22933.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	6.17702722550939	6.09366981822825	5.84092321816517	5.88699152041018	5.78677775809428	5.86463655574281	6.14643343151833	5.73633734642812	-0.175522284769934	0.492768101192968	0.763756220599562
Merged-chr6-42339418-4	chr6	42339303	42339503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-10425.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	5.58897849310519	5.63067928214798	5.93167510309989	6.25402339485314	5.84855587441139	5.45581842737007	5.76689866177523	5.69332465757986	-0.316603959319025	0.282852096612703	0.595041976860567
Merged-chr18-36515234-2	chr18	36515134	36515334	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010415, exon 2 of 6)	exon (NM_010415, exon 2 of 6)	571.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	4.95315044182483	5.33811554054725	5.31832543186702	4.90195250867779	5.65641002377187	5.62262325892507	5.00386077698611	5.024201809879	0.440801430714021	0.203461436059546	0.506267958430434
Merged-chr10-34249688-4	chr10	34249557	34249757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32533.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	6.39121189808906	6.40019973665192	6.23020700102988	6.0846723219183	6.12551097397111	6.24285275062759	6.32552199301461	6.06183122486691	-0.124096968971216	0.595244236501532	0.823817850531136
Merged-chr3-36151034-4	chr3	36150918	36151118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101478)	promoter-TSS (NM_001101478)	-62.0	NM_001101478	241944.0	Mm.260056	NM_001101478	ENSMUSG00000033883	D3Ertd254e	-	DNA segment, Chr 3, ERATO Doi 254, expressed	protein-coding	6.72135735375414	6.5532300356297	6.97826300733494	7.12028695498687	6.81165339189475	6.43890231081844	7.00215096821722	6.76173938891957	-0.140590196128683	0.551126902294509	0.798837168776829
Merged-chr10-30550215-3	chr10	30550108	30550308	+	844.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358806, intron 9 of 10)	L1MB7|LINE|L1	50492.0	NM_028604	73681.0	Mm.294503	NM_028604	ENSMUSG00000019792	Trmt11	2410075D05Rik|3110045I18Rik|AW213713	tRNA methyltransferase 11	protein-coding	3.65484117374527	3.66231325902815	4.19303813198116	3.57841702892151	3.99851873757481	3.71686312065526	3.69485135829407	3.41004204646279	-0.176960025439101	0.734717453517522	0.89516046054632
Merged-chr19-10818715-4	chr19	10818620	10818820	+	983.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009852, intron 1 of 12)	intron (NM_009852, intron 1 of 12)	11338.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	4.81244942032561	5.03519355118805	4.51691914708516	4.86751700279928	4.9620316015985	5.12790661661009	4.96534732985096	4.77169168136929	0.265463532459687	0.430791504467856	0.721309079893587
Merged-chr9-40800108-4	chr9	40800004	40800204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1169.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	6.57028855096238	6.42720340379964	6.49106995834931	6.59445088155152	6.44757250230889	6.09246472866908	6.58353063936065	6.55109983643001	-0.131534136315369	0.55593544440084	0.801730133825154
Merged-chr19-17251574-3	chr19	17251450	17251650	+	639.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	87955.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	3.35300958567575	3.40488587977138	3.47384916074288	3.67564646078203	3.56880058569991	3.70049920787898	3.67000470931764	3.6338122559121	0.45703576013706	0.357267077292644	0.663464042751261
Merged-chr2-60880144-2	chr2	60880044	60880244	+	754.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	1294.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	2.04997755290727	2.30190856621636	1.96909675345146	1.96280915377999	2.11896775086675	2.37363506503301	2.32430472147825	2.45382160522566	1.57669627952544	0.0521241288047338	0.237677345560035
Merged-chr1-171345620-4	chr1	171345498	171345698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360824)	promoter-TSS (NM_001360824)	47.0	NM_001242580	27045.0	Mm.12915	NM_012049	ENSMUSG00000013997	Nit1	AI255805|ESTM30|W57327	nitrilase 1	protein-coding	5.66104317771745	5.76091897343071	5.48190011787255	5.39965409253475	5.17615965510613	5.60012438671745	5.07312755604816	5.50538694253379	-0.400000050685694	0.183306290646716	0.480231739919189
Merged-chr6-72428219-4	chr6	72428106	72428306	+	863.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019802, intron 10 of 14)	intron (NM_019802, intron 10 of 14)	-10477.0	NR_046011	78108.0	Mm.440743	NR_046011	ENSMUSG00000108591	Particl	4930414L22Rik|AI449819	promoter of Mat2a antisense radiation induced circulating long non-coding RNA	ncRNA	3.80782100329141	4.12722565514653	3.80835069799235	3.728169564355	4.22379141011066	3.92870256482891	3.62640773155424	3.80620838297947	0.146291212051949	0.758427203253024	0.905135209683573
Merged-chr11-33274513-1	chr11	33274413	33274613	+	777.0	f0_balb.idr	intron (NR_110973, intron 23 of 28)	L2|LINE|L2	-70925.0	NM_019916	27140.0	Mm.25362	NM_019916	ENSMUSG00000040610	Tlx3	Hox11l2|Rnx|Tlx1l2	T cell leukemia, homeobox 3	protein-coding	3.05834420235768	3.18521151988694	3.27665018336004	3.56034835442525	2.56400273260338	2.83074135815513	2.85848341892863	2.72200185586747	-2.74814818948252	0.000212454956661998	0.0038284383190492
Merged-chr1-80454202-4	chr1	80454105	80454305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040460, intron 2 of 2)	ORR1E|LTR|ERVL-MaLR	8273.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	5.66026738019496	5.49179333108002	5.71272138313659	6.11201246357993	5.71790216106588	5.67053187319539	5.75681042904788	5.85144157337481	-0.0627897109040085	0.823742302433259	0.932387119655244
Merged-chr5-5418503-4	chr5	5418402	5418602	+	752.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-38251.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	4.18625785708541	4.18743988679339	4.0024248249552	3.4790941044986	3.79379849634714	4.17699022516198	4.20931479664992	4.14058255274559	0.266298518073122	0.581519919761896	0.816369616347063
Merged-chr4-46452545-5	chr4	46452400	46452600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130889, intron 1 of 6)	CpG	1574.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	5.30286611247749	5.72657814498031	5.56175948853499	5.18276538579389	5.40463943304723	5.6823835151505	5.36883212354873	5.42115446079578	0.0373135238273158	0.900625010389865	0.963161804192488
Merged-chr5-102537949-3	chr5	102537858	102538058	+	786.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146161, intron 1 of 8)	intron (NM_146161, intron 1 of 8)	56567.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	3.03520973323259	3.28052963421354	3.23571230616975	3.5278335471763	3.00368396966306	3.35010721203711	3.22401677944191	3.89606998047187	0.431752577561197	0.489997073724937	0.761990704265616
Merged-chr2-46245944-4	chr2	46245835	46246035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	549330.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	5.71075819474177	5.59675714178235	5.73625982091126	5.84244299168056	5.91664663608546	5.67298665278493	5.632713140717	5.36987333005288	-0.0936099060960296	0.732877963258471	0.894231347787915
Merged-chr8-83140202-3	chr8	83140084	83140284	+	809.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-25168.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	3.68737621650232	3.73612179602995	4.06645307872369	3.8829431490521	3.6846203578018	3.91339509502817	3.61803262708104	3.68586943736073	-0.370596371743916	0.425519549333237	0.716992238586874
Merged-chr1-157413199-2	chr1	157413114	157413314	+	653.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_177644)	promoter-TSS (NM_177644)	-619.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	3.23121810543898	3.11252132724802	3.06391122629307	3.30049435368385	2.96788736263282	2.82918507595204	3.21870122407023	3.00127260069264	-0.721956977761307	0.225910172477189	0.534540927024594
Merged-chr2-27768008-4	chr2	27767913	27768113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	57430.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	6.40384707770328	6.7031235844921	6.02251774467763	6.06128963332462	6.14698688945891	6.63151453130023	6.59331381704164	6.36518530826573	0.175965378878359	0.509190434466325	0.773921693917156
Merged-chr6-106800046-4	chr6	106799920	106800120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175357)	promoter-TSS (NM_175357)	67.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	7.79118810932015	7.75343340736489	8.03184379489551	7.49758801652783	7.86656425147541	8.1299290313677	7.96102683448941	7.53921362668113	0.15145805729803	0.45649678912246	0.739906295182684
Merged-chr14-67715412-3	chr14	67715323	67715523	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285933)	promoter-TSS (NM_001285933)	187.0	NM_001110162	108912.0	Mm.33831	NM_175384	ENSMUSG00000048922	Cdca2	2610311M19Rik|AI586158	cell division cycle associated 2	protein-coding	6.21816010355025	5.90570854075751	5.78833520073098	5.52275739105565	5.95970715669091	6.23907180159149	6.2405573729777	6.12016175179635	0.433434624814567	0.108166586658798	0.362980975521504
Merged-chr11-107012811-4	chr11	107012688	107012888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-13263.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	6.66299362716942	6.90448307132692	6.12184694649699	6.14200213184682	6.57384323155375	6.83978663433384	6.25832384297088	6.65940765098622	0.146309939020639	0.594669233978694	0.823531813292476
Merged-chr15-97573230-3	chr15	97573128	97573328	+	816.8444820000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	132594.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	4.23709921408278	4.24364072110586	3.98237302137245	4.0572389067331	3.67533596095268	3.78225313698104	3.70776033791622	3.66110244775926	-1.23611018889135	0.00633577905751264	0.0564423551357562
Merged-chr4-9670580-3	chr4	9670508	9670708	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-1264.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	4.33138322501969	4.08658713638799	4.2114235200382	3.12889190675555	5.65680066050946	5.91743198198875	5.95048533343282	6.01219286323885	4.06969134836738	7.34422884398879e-21	2.81051002627031e-18
Merged-chr6-127108464-3	chr6	127108334	127108534	+	930.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177003, intron 1 of 5)	intron (NM_177003, intron 1 of 5)	1118.0	NM_177003	319801.0	Mm.101836	NM_177003	ENSMUSG00000038028	Tigar	9630033F20Rik|AA793651|AI595337|C79710|C85509	Trp53 induced glycolysis repulatory phosphatase	protein-coding	3.78543555759522	3.79081495823517	3.63658921416262	4.00280363480077	3.88411061844457	3.2390498165969	3.26424607402935	3.46578357519293	-0.969559412813949	0.0891383262406847	0.325740677866603
Merged-chr2-114624817-3	chr2	114624690	114624890	+	942.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025675, intron 3 of 8)	intron (NM_025675, intron 3 of 8)	30174.0	NM_001356438	66632.0	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	4.04871002861178	3.92899159197339	4.18278120729778	4.01129410053399	3.82696025943638	3.9677991097341	4.24449998505178	3.94960206993411	-0.109809420861395	0.798087612704577	0.921955533143952
Merged-chr9-21012061-4	chr9	21011999	21012199	+	837.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3841.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	4.24344681462287	4.36793632805163	4.24412296131703	3.5953283887101	4.47491592832141	4.083013698645	3.83263745680496	4.05835212118558	0.00240750140383358	0.996076891111521	0.998543856884531
Merged-chr17-5138915-4	chr17	5138793	5138993	+	977.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	143819.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	4.89353337657466	4.9492592190174	5.35139037115646	5.06164960423677	4.86383833538466	4.91564195466698	5.04102773489255	4.64986586411426	-0.392333564822053	0.237117487587191	0.547279017452248
Merged-chr18-46577672-4	chr18	46577577	46577777	+	839.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4a2|LINE|L1	-3144.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	4.31036478303512	5.09563240568014	4.22087572912006	3.58114284013473	4.4123093446646	4.25377276101664	3.89093996150049	3.96201444122897	-0.649929772228191	0.232373133658956	0.541946192758711
Merged-chr5-124443288-4	chr5	124443194	124443394	+	924.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310725, intron 1 of 6)	intron (NM_001310725, intron 1 of 6)	-2205.0	NM_001310723	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	3.44751849224054	3.21768991601587	4.19978343355794	3.70509794442781	3.9493782679155	3.9758712368063	3.88451895765825	3.99177352479358	0.72564611027848	0.184813677522572	0.48251943369223
Merged-chr12-70911182-4	chr12	70911077	70911277	+	881.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-26680.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	4.64072686103322	4.58994970364469	4.71190949743482	4.17253734502187	4.14229872163031	4.34385608627097	4.58274368016517	4.35592940185269	-0.396073444807062	0.329075362534542	0.640336735854547
Merged-chr3-69193227-3	chr3	69193133	69193333	+	854.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29186.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	3.2457187958105	2.84741769252963	3.05771864725053	3.26065651623386	3.48909906788147	3.47277984045066	3.39632615489081	3.24443685406103	1.02933965540635	0.0736696273957132	0.292391705870387
Merged-chr2-181239042-4	chr2	181238935	181239135	+	920.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183162, intron 4 of 18)	L1_Mus3|LINE|L1	2992.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	3.85271609085941	4.27857981928691	3.97104169230376	3.49890601386788	4.79903330747977	4.57552029480055	4.76148333679264	4.07710955572337	1.61562048529598	0.000503630798984814	0.00776192979044074
Merged-chr19-34213079-3	chr19	34212979	34213179	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	-4429.0	NM_001360719	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	4.699570633558	4.51577528581891	4.66631615953234	4.86345143506019	3.78070888565183	4.1295212189097	3.92874798186899	4.30693326323659	-1.6259308674372	0.000106963458002702	0.00214829344728395
Merged-chr16-90397057-4	chr16	90396949	90397149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 1 of 10)	MLTR14|LTR|ERV1	10652.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	6.48840295558381	6.16938196239944	6.29367196755384	6.28965266846581	5.98002765515806	6.12288411122982	6.00637398832257	5.8710150322958	-0.488964433928797	0.0360693292465698	0.188763972240393
Merged-chr12-80063982-4	chr12	80063890	80064090	+	993.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49023.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	5.66719629655016	5.66287453250173	5.92719354939101	5.5852092733129	5.14647868046499	5.35468009113176	5.28346554209506	5.13636565882888	-0.844899631607614	0.00289865726931788	0.0311329639980587
Merged-chr8-40023644-4	chr8	40023539	40023739	+	787.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	263314.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	3.69949788020088	3.60846519385396	3.70001507283	3.58842101384546	3.64612489969825	3.51830718662759	4.00837720622164	4.02464186236897	0.508973115707135	0.285688212820141	0.597403017136955
Merged-chr6-32460586-4	chr6	32460482	32460682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-50559.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	5.94527149910352	6.43912015646652	5.96858643639584	6.11300340754958	5.6867361569274	5.95560174631132	5.98121446768368	5.69511112969474	-0.484773096759138	0.0632845019687639	0.267002647748843
Merged-chr12-41197453-4	chr12	41197368	41197568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	173378.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	5.87146499364421	5.5493326043057	6.41539209736625	6.47466666814238	5.60848911178663	5.61106834092478	5.88816640313692	5.79608015584206	-0.660956611489921	0.0320616957707915	0.174942080741216
Merged-chr16-38506245-3	chr16	38506141	38506341	+	841.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024273, intron 4 of 6)	intron (NM_024273, intron 4 of 6)	16422.0	NM_024273	76916.0	Mm.132231	NM_024273	ENSMUSG00000002846	Timmdc1	2810021C21Rik|4930455C21Rik|AV135763	translocase of inner mitochondrial membrane domain containing 1	protein-coding	3.95288124958317	3.5734853404727	3.65722718563898	3.48138515748401	3.84134233122611	3.77597338487066	3.93553914479695	3.70949498169518	0.462836045823878	0.325858453248092	0.637398083040094
Merged-chr5-107988145-4	chr5	107988068	107988268	+	915.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-1091.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	4.32218864477586	4.06168875714841	4.45560751857362	4.39757958914656	4.8398856598874	4.62806068157183	4.55431784523314	4.41007097241687	0.689046057854327	0.0705325252305794	0.284685830075838
Merged-chr1-152575142-4	chr1	152575050	152575250	+	838.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	50067.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.12571811607125	3.91371246672241	4.03855230318514	3.74370129564641	4.13962942287785	4.11553647584869	3.71783418635769	3.6712701695295	-0.0477074766834524	0.918606330173087	0.970054173425813
Merged-chr9-5345504-4	chr9	5345411	5345611	+	695.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009808)	promoter-TSS (NM_009808)	35.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	3.7945147943799	3.30663079485158	3.69698232261714	3.57186552907927	3.87148546658395	3.70792722289802	3.68165012398738	3.53230399700701	0.338644401712123	0.492907182623081	0.763871986760902
Merged-chr6-125271694-4	chr6	125271609	125271809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015527, intron 3 of 3)	intron (NR_015527, intron 3 of 3)	6184.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	7.79309688229578	8.00154487864799	7.61209538438325	7.85158175023444	7.81228355149928	7.57657908696627	7.89474359712916	7.83453060191118	-0.0502242188124028	0.777026981407791	0.913034573074491
Merged-chr13-43802952-4	chr13	43802851	43803051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289915, exon 5 of 5)	3' UTR (NM_001289915, exon 5 of 5)	17839.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	7.12685820458698	7.17827201836911	6.78618925902739	7.02108127179915	6.66839932399081	7.17617995958622	6.44103062313134	6.89267558131017	-0.308183882776761	0.183368698564765	0.480304416680915
Merged-chr4-114908261-3	chr4	114908146	114908346	+	770.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008593, exon 1 of 1)	exon (NM_008593, exon 1 of 1)	652.0	NM_008593	17301.0	Mm.7997	NM_008593	ENSMUSG00000055210	Foxd2	AI426778|Mf2	forkhead box D2	protein-coding	2.8908921732266	2.93382028445669	2.89118005823911	3.00205328799831	3.21927682431983	3.38433327036798	3.08209523911613	3.6422446877484	1.57074648644744	0.00801966564440094	0.0673150685026904
Merged-chr1-155973326-4	chr1	155973265	155973465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039184)	promoter-TSS (NM_001039184)	-110.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	7.91108277969913	7.88078541671865	7.65177085113154	7.59689957616138	8.08914455822725	8.13191539787416	8.01529317556433	7.82612036055237	0.338118497383486	0.0544296074192967	0.243534247246073
Merged-chr3-123256876-4	chr3	123256766	123256966	+	991.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-10630.0	NM_027135	69608.0	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	5.52506118587894	6.22405131800312	5.52602166856749	5.44228922093083	6.30718364713515	6.18481456871177	6.54350844272917	5.52213686987899	0.7440246998715	0.0251569033608218	0.149071197495832
Merged-chr10-8859659-4	chr10	8859556	8859756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	B1F1|SINE|Alu	26414.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.97632850363782	5.38969813527877	5.75516989529104	6.05200699105141	5.73475076939259	5.28878363022588	5.81897415238473	5.82191373394137	-0.229081085953544	0.442759145287517	0.729517435241208
Merged-chr14-33393473-4	chr14	33393351	33393551	+	908.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310452, intron 4 of 10)	MTD|LTR|ERVL-MaLR	17573.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	3.89252567545855	4.12748512466865	4.27429188273743	4.10817360607885	3.77563049102882	3.7726971488855	4.57559032445643	4.22965632856367	0.0635781057264251	0.893547640011886	0.960259496156144
Merged-chr10-95301288-2	chr10	95301188	95301388	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	22421.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	2.97883191079294	2.86248544573353	2.80508654754394	2.4885769012833	2.7223630531412	2.78124157211181	2.73210355364158	2.74009268860922	-0.212287372014845	0.749093434293282	0.901188546793116
Merged-chr18-69666922-4	chr18	69666796	69666996	+	856.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-258663.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	4.06295470088572	4.25595056844593	4.01233096640175	4.58652207838598	4.35224630775569	4.33187457225719	4.0953882208078	3.84370511067533	-0.226132371146963	0.61681731173199	0.835175859416732
Merged-chr8-91313401-4	chr8	91313307	91313507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173431)	promoter-TSS (NM_173431)	-118.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	9.24375357237085	9.42496367260918	9.5629330209179	9.68343933072598	9.28585479845067	9.25898325818664	9.53174127470559	9.28174871822065	-0.182272275191421	0.255549270990095	0.567153328754178
Merged-chr12-110598443-6	chr12	110598307	110598507	+	788.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2988.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	3.65712089331249	3.68439559579079	3.82563625934872	4.183066370204	4.05865063135372	3.94582529390616	3.75731035831966	4.14636988722448	0.305015910264076	0.525437690382269	0.783252235625498
Merged-chr6-24894760-4	chr6	24894667	24894867	+	933.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36770.0	NM_028957	74468.0	Mm.251601	NM_028957	ENSMUSG00000029678	Hyal5	4933439A12Rik	hyaluronoglucosaminidase 5	protein-coding	4.82112244191823	4.83244114259265	5.23732258548815	5.11019171162211	4.67736336193892	4.7516759968141	4.94085366514261	4.81872794879923	-0.446087475557538	0.182911627196377	0.479697384481446
Merged-chr5-90904944-7	chr5	90904791	90904991	+	987.5238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009140, intron 3 of 3)	intron (NM_009140, intron 3 of 3)	992.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	4.92251334213069	5.90932688000735	5.00057222698541	3.57422169355975	6.0894291689844	5.92464944291426	4.9374130055646	4.5592140939092	0.660156574159022	0.482602969912169	0.757401702063286
Merged-chr10-88731409-4	chr10	88731302	88731502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025859)	promoter-TSS (NM_025859)	-12.0	NM_025859	104303.0	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	7.06637651023284	6.86333589293495	6.74129001770765	6.97357454971195	6.60349383979264	6.54113368825663	7.1096082167739	6.97954731869212	-0.128220096364938	0.567420283493524	0.808236944603581
Merged-chr11-70306254-4	chr11	70306152	70306352	+	854.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR73|LTR|ERV1	16278.0	NM_145684	11685.0	Mm.274093	NM_145684	ENSMUSG00000018907	Alox12e	12-LOX|8-LOX|AW259591|Alox12-ps1|Alox12-ps2|Aloxe|e-LOX1	arachidonate lipoxygenase, epidermal	protein-coding	4.23865404040438	4.56872176203507	4.194750579344	4.35898727967927	3.82297754881773	3.76017404192342	4.13050747945421	4.32121395942398	-0.834476694827682	0.0582988229990711	0.253826437426809
Merged-chr1-179517575-2	chr1	179517475	179517675	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	466.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	4.76374215978776	4.38824901814359	4.13464035066062	4.52623892247614	4.44890065156112	4.41591754144414	4.60269137973231	4.5453886291191	0.0647979562759352	0.865639589431844	0.949726204279319
Merged-chr10-75921432-7	chr10	75921323	75921523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001161853, exon 1 of 9)	5' UTR (NM_001161853, exon 1 of 9)	191.0	NM_011418	20587.0	Mm.279751	NM_011418	ENSMUSG00000000902	Smarcb1	AU020204|Baf47|Ini1|SNF5/INI1|Snf5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding	5.97422263568011	5.6724269891458	5.74934663586411	5.62906895036499	5.6433984616556	5.94859643684673	5.59093247711908	5.99149555766162	0.0756840032902435	0.777402608509811	0.913174801490524
Merged-chr9-56463994-4	chr9	56463898	56464098	+	879.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025812, intron 1 of 9)	intron (NM_025812, intron 1 of 9)	45379.0	NM_025812	66867.0	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	3.98850067619459	3.69727686921057	3.68171957815643	3.64574616280243	3.89051295171296	4.01654632533047	3.87794528761374	4.07447878757825	0.610011222071801	0.168454009766504	0.460548798201267
Merged-chr16-23986369-2	chr16	23986269	23986469	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	2483.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	3.06132478781948	3.20263438442913	2.93234911006601	2.82757057759819	3.12777213782764	3.17265444431293	3.05075173946867	3.33592153886493	0.676942985121951	0.24131819136036	0.55188287450279
Merged-chr8-123102357-4	chr8	123102275	123102475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016738)	promoter-TSS (NM_016738)	25.0	NM_016738	270106.0	Mm.319719	NM_016738	ENSMUSG00000000740	Rpl13	A52|L13	ribosomal protein L13	protein-coding	7.31037297133686	7.13579345310466	6.92960420511289	6.9515246657673	7.35407277880893	7.25913255140745	7.08198369639767	6.88347681705659	0.106798333064336	0.608862988383594	0.8308078109454
Merged-chr9-122805581-4	chr9	122805521	122805721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013405)	promoter-TSS (NM_001013405)	74.0	NM_001013405	382117.0	Mm.215892	NM_001013405	ENSMUSG00000046603	Tcaim	D9Ertd402e|Gm1129|TOAG-1	T cell activation inhibitor, mitochondrial	protein-coding	6.94918204045973	7.06223512224543	7.22905207367274	6.77151632239805	6.90257727348595	7.06060088444728	6.97838792952902	7.05731407224028	-0.00508214594020072	0.980037882346503	0.992772119265666
Merged-chr18-52684440-4	chr18	52684330	52684530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9249.0	NM_010293	14625.0	Mm.32242	NM_010293	ENSMUSG00000053624	Gykl1	AI449806|Gk-rs1	glycerol kinase-like 1	protein-coding	6.29488630360674	5.54628445401541	6.29600463216766	5.80824766811432	6.15494154787057	6.04614707698016	5.90952535637612	6.0657754936783	0.060549482867034	0.829231647664855	0.934397133080848
Merged-chr15-97576922-4	chr15	97576817	97577017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	128905.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	5.93719467294108	5.71785086372173	5.89410502435397	5.91063231399877	5.84168181650228	5.73984015923051	5.99131135513849	5.69625087339327	-0.0718832864309409	0.773305172121042	0.911279243177439
Merged-chr14-55560681-5	chr14	55560519	55560719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199009)	promoter-TSS (NM_001199009)	-304.0	NM_001199009	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	8.10189557252332	8.55591725279062	8.47520028473173	7.79764063040644	8.03718082578212	8.31246336454574	7.88000184777809	7.89039333722497	-0.283719179747837	0.193886666814206	0.494222140709368
Merged-chr11-114892454-4	chr11	114892341	114892541	+	926.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359812, intron 2 of 7)	RLTR12B2|LTR|ERVK	2400.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	4.51783860647239	4.57724810854541	4.92350060340536	4.81172292318686	4.42086766622846	4.30288991419556	5.01795306803155	4.55823937559517	-0.253623229890848	0.515012218510077	0.777345406958072
Merged-chr16-32130357-4	chr16	32130273	32130473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30571.0	NM_025892	66994.0	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	6.64740037503516	7.08885593532323	6.64857233016599	6.58914587174031	6.76643381034066	6.4955775991684	6.46914114043574	6.56476143476657	-0.243454922375876	0.287425029440711	0.599186567788202
Merged-chr2-166083631-4	chr2	166083530	166083730	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 10 of 20)	intron (NM_001252579, intron 10 of 20)	71655.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	4.41306416779543	4.33752733119872	4.57107601664194	4.66002312889944	4.35860949800238	3.96882572111489	4.30802785101519	4.49195160653848	-0.491971483154279	0.216864168794355	0.523576380620064
Merged-chr6-55017760-4	chr6	55017575	55017775	+	862.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20326.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	4.13563894999973	3.96696868708631	3.99193100368759	4.30634984096572	3.7702179735751	4.35119655459996	3.75705688626144	4.38059047537075	-0.0560423127433849	0.904840445132097	0.964691960037782
Merged-chr12-8347833-4	chr12	8347719	8347919	+	790.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34386.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	3.53850442488221	3.71981906396391	3.71528439241403	4.02933869361078	3.76514528465379	3.94125178731184	3.75406852660223	4.13129258487738	0.349685710224617	0.469125966481299	0.748095998770725
Merged-chr17-50170096-4	chr17	50170018	50170218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 1 of 9)	(CA)n|Simple_repeat|Simple_repeat	20379.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	5.8796042864982	6.13918176495482	5.69605447067123	5.93309702574025	6.43799371143525	6.4162220783658	6.24582576994325	6.12128717444315	0.597954366389444	0.013621546999417	0.0981396038002393
Merged-chr2-166021244-4	chr2	166021132	166021332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	28595.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	6.56188804908065	6.44920764422901	6.42849201961121	6.73137706471868	6.38783772339701	6.5872691725078	6.79971515301806	6.36953834380137	-0.0246957853955767	0.913411447721273	0.967524531047837
Merged-chr17-34091084-2	chr17	34090941	34091141	+	910.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_046183, intron 3 of 4)	intron (NR_046183, intron 3 of 4)	-1338.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	2.53970816632109	2.65021120241361	2.38491846718623	2.43913245621332	2.86197809485783	3.08716715035731	2.79458127582365	2.74263586527951	1.8404554027991	0.00611317584080853	0.0550100813113667
Merged-chr1-23380200-4	chr1	23380065	23380265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081079, intron 1 of 6)	intron (NM_001081079, intron 1 of 6)	3010.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	6.8960266013412	6.70375712730753	6.83016981595827	7.30754452467523	6.62290192949946	6.548828146968	6.72490889904787	6.94349622274793	-0.357761803034849	0.124723117518803	0.392071138182701
Merged-chr2-167007788-4	chr2	167007696	167007896	+	991.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7517.0	NM_153065	228889.0	Mm.295031	NM_153065	ENSMUSG00000017999	Ddx27	C86129	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding	5.47984897225553	5.75179067157977	5.21682750790075	5.07748712594474	5.13012978060655	5.62521123946081	5.37175956914329	5.04155699858337	-0.172216286745803	0.607096541408183	0.829771416202606
Merged-chr1-138262570-4	chr1	138262463	138262663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-11175.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	5.46160290232962	5.38492471861477	5.341801499296	5.74151802741252	5.58044860676813	5.89426372502116	5.51824786703965	5.39984847291468	0.165199052872511	0.57080535455476	0.810205083691013
Merged-chr6-30896646-7	chr6	30896464	30896664	+	997.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_054073)	TTS (NM_054073)	230.0	NR_149738	54160.0	Mm.39896	NM_017478	ENSMUSG00000025607	Copg2	AW227625|gamma-2-COP	coatomer protein complex, subunit gamma 2	protein-coding	4.69689394344416	4.79837635521597	4.65535970319099	4.73030817201541	4.98165478934678	4.87448165431609	5.23370733887643	5.14523750316935	0.680852753463886	0.0342973506764694	0.183041341384736
Merged-chr5-105594766-4	chr5	105594674	105594874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	75303.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	6.100133531756	5.75273062249693	6.50738367941085	6.10321765121508	5.69156447553811	5.91041905201156	6.2371925273993	5.61639845396619	-0.402826900091242	0.164827184554803	0.455072150356386
Merged-chr3-117868305-3	chr3	117868214	117868414	+	834.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190156, intron 1 of 7)	intron (NM_001190156, intron 1 of 7)	622.0	NM_001190156	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	3.732580926005	3.62676711296347	4.3254198704643	3.58884287873962	3.23577887556924	3.57214844515586	3.37765150531275	3.51223409162874	-1.35460064001066	0.0140764493829297	0.100385491496599
Merged-chr13-98354204-3	chr13	98354164	98354364	+	731.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008242)	promoter-TSS (NM_008242)	19.0	NM_008242	15229.0	Mm.347441	NM_008242	ENSMUSG00000078302	Foxd1	AI385632|BF-2|FREAC4|Hfh10|Hfhbf2	forkhead box D1	protein-coding	3.56323478772983	3.80669229977913	4.14705791941497	3.82828879199474	3.79033682132446	4.08742838634841	4.24864925530963	4.22693589665674	0.660655711063901	0.152924257706117	0.437419043569042
Merged-chr16-18733318-4	chr16	18733246	18733446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43501.0	NM_013805	12741.0	Mm.22768	NM_013805	ENSMUSG00000041378	Cldn5	AI854493|MBEC1|Tmvcf	claudin 5	protein-coding	6.61405075310806	6.75112178085884	6.87056255034731	7.07183754669304	6.41138204378681	6.23070350815636	6.70084420511341	6.56241584454286	-0.520961039833279	0.0223262588017206	0.137780542331166
Merged-chr8-66394375-4	chr8	66394271	66394471	+	912.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 5 of 7)	intron (NM_175188, intron 5 of 7)	8070.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	4.89262767300661	4.97499733036241	4.71206552688399	4.79206493041437	4.71430919473217	4.72223150173276	4.65093589347091	4.66945926046163	-0.32294834814546	0.332645009291037	0.643569383856011
Merged-chr10-94372883-4	chr10	94372772	94372972	+	956.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	60923.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.13123428236047	5.27694534052588	4.96104527710284	5.54286008439122	4.8267431640489	5.17206453221676	4.93736122692126	4.92065134130272	-0.579491433926033	0.0796475853114562	0.305652117472727
Merged-chr3-51636817-4	chr3	51636739	51636939	+	860.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24340.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	4.65664585923983	4.68890384935955	4.54439747747786	4.52301087508876	4.10341589090843	4.36185349835083	4.31146908915337	4.58018808417679	-0.603266684416852	0.112814395770473	0.371403676741782
Merged-chr18-49982016-4	chr18	49981907	49982107	+	772.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	RLTR12E|LTR|ERVK	2580.0	NM_001177759	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	4.33707832429266	4.11502921376751	4.16882302605067	3.95094879970851	4.19439823593207	3.86629436331807	4.31750212306209	4.12031802522825	0.00333146072815823	0.993721784029844	0.997702270136287
Merged-chr8-80969667-4	chr8	80969587	80969787	+	882.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	45219.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	4.9252467406263	4.55371921979168	4.62904097898693	4.85196125244522	4.13583426814488	4.08787909063304	4.44988480075016	4.23751335621209	-1.2086628752792	0.00186780073494184	0.0221691159767258
Merged-chr2-68867357-4	chr2	68867242	68867442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	5901.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	5.95350246211265	6.52358320471926	6.0213044584159	5.73276179123893	6.16790058251464	6.21837281221716	6.03286054986928	5.77956841220749	-0.0351681015806966	0.901551762721303	0.963435568615004
Merged-chr9-37329656-2	chr9	37329556	37329756	+	694.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081429, intron 4 of 15)	intron (NM_001081429, intron 4 of 15)	18736.0	NM_001081429	245902.0	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	3.26239870130208	3.25819227363641	2.99461651965154	3.45944461475196	3.31350155456102	3.43556460470576	3.52054874798172	3.58175826653179	0.681042642274903	0.221290989920767	0.529412246489853
Merged-chr13-33959986-3	chr13	33959884	33960084	+	934.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040707, exon 5 of 5)	non-coding (NR_040707, exon 5 of 5)	-4675.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	4.20708517974514	3.86967356720548	3.88146832624688	4.25972191541876	4.02015613195406	4.33434762325841	3.43753821977703	3.93116056697134	-0.273493774465293	0.589235232262126	0.820381319872973
Merged-chr8-88633587-4	chr8	88633476	88633676	+	973.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027840, intron 1 of 3)	MTEa|LTR|ERVL-MaLR	2552.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	5.19550805229327	5.6004777139275	5.5368810521989	4.98067792810475	7.02221991117039	7.0379247917582	7.2842732425986	7.17449883868315	2.74173091725983	1.50130123685123e-28	1.48418223246991e-25
Merged-chr2-24572155-4	chr2	24572044	24572244	+	806.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96545.0	NM_011040	18510.0	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	4.15620433716114	4.15555140358931	4.53260400158511	4.76454930252503	4.07507872112911	3.95071898525374	4.13907892443448	4.33490813971707	-0.765823962456272	0.0791140837057097	0.304392506166957
Merged-chr9-51044844-4	chr9	51044735	51044935	+	900.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	32259.0	NM_001033534	244864.0	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	4.67371512489292	4.77605602347075	4.81834426722395	4.44752924002689	4.56800845809869	4.45656158385684	4.44834128726726	4.84855685912607	-0.180144732569753	0.623923386796359	0.839195335242146
Merged-chr6-42397431-4	chr6	42397324	42397524	+	947.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2814.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	5.39632625666158	4.9946128201954	4.58042024723022	5.44085927432996	4.96886280450131	4.9758770452382	4.69396565680878	4.9821254234708	-0.480587836463634	0.190314689022572	0.489452447654893
Merged-chr6-136548566-3	chr6	136548464	136548664	+	735.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	29713.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	3.6523909571757	3.4652451603308	3.18519220797652	3.43678092248161	3.59191367334267	3.49474574558924	3.53646551487384	3.74508405962628	0.493876456315736	0.328471679148845	0.639942128100059
Merged-chr2-52943878-4	chr2	52943786	52943986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	86018.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	6.53349524360317	7.08809032154493	6.5674056284403	6.43559817026036	6.76897888850144	6.7438865517397	6.53380975994277	6.14554680385956	-0.150362609883889	0.564009558037712	0.806558370465832
Merged-chr3-121571691-4	chr3	121571589	121571789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39345.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	6.13146374124413	6.03889405752826	5.95631220445124	5.84157004228402	6.15629823146422	6.49790141796051	6.61393037274852	6.22694330174958	0.603183041144071	0.0130554630682386	0.0952746868120617
Merged-chr2-102532315-3	chr2	102532219	102532419	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17702.0	NM_173749	210622.0	Mm.28649	NM_173749	ENSMUSG00000027188	Pamr1	5930437L24|E430002G05Rik|Ramp	peptidase domain containing associated with muscle regeneration 1	protein-coding	3.66774237246704	3.46813474400449	3.74322030560176	3.58399575440796	5.35561206316984	4.90407760459094	5.36840551564359	5.30384956306085	3.86670746194253	3.35529334448533e-15	5.56704953303314e-13
Merged-chr7-99101212-3	chr7	99101138	99101338	+	883.2333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 3 of 14)	intron (NM_178635, intron 3 of 14)	39906.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	3.8076688767372	3.3648004271218	3.85638388345536	3.71752535720634	3.68018825661932	3.65313462811288	3.92960036507751	3.85403186383076	0.252331169527624	0.600310563572589	0.826766471866254
Merged-chr1-36573987-4	chr1	36573915	36574115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-15634.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	5.89070683795096	5.61321687323892	6.36950567836687	6.70682897500497	5.89900692355576	5.77515510386776	6.21573661659998	6.12892014851381	-0.330504149329755	0.29919504819852	0.611487916419371
Merged-chr13-89740945-4	chr13	89740831	89741031	+	949.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081249, intron 1 of 14)	intron (NM_001081249, intron 1 of 14)	1581.0	NM_001081249	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	4.1731107263999	4.76267244750354	4.50974540156555	4.01132917599693	4.6635643154263	4.80362149616884	4.71858833324625	4.77326869729087	0.777461728652236	0.0506551936769269	0.23339651366127
Merged-chr12-98884710-4	chr12	98884611	98884811	+	794.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 2 of 43)	intron (NM_001081191, intron 2 of 43)	16773.0	NM_001081191	319670.0	Mm.390484	NM_001081191	ENSMUSG00000051166	Eml5	BC027154|C130068M19Rik	echinoderm microtubule associated protein like 5	protein-coding	3.24806252860551	3.73536868167497	3.44468699637243	3.40349322562629	3.93163896955437	3.78736910550534	3.84119517434396	3.44295725543163	0.924999715906443	0.0706980579681305	0.285078171722486
Merged-chr14-30867219-3	chr14	30867132	30867332	+	756.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028839, intron 4 of 7)	intron (NM_028839, intron 4 of 7)	-12025.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	3.53615031378009	3.39639731082844	3.2002220279599	3.1405146489825	3.34387577859477	3.31238926282222	3.52139232313742	3.37752095927714	0.257067151067574	0.628171335606916	0.841427212108636
Merged-chr19-34553660-4	chr19	34553552	34553752	+	922.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355262, intron 1 of 2)	MLT2F|LTR|ERVL	2564.0	NM_001355262	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	4.6433003687848	4.09327330988087	4.6440617779502	4.70438941546682	4.6227129960165	4.43616675754711	4.42431347307411	4.52507824286327	-0.0907108373738408	0.815888711971609	0.929097088750314
Merged-chr17-17878674-4	chr17	17878570	17878770	+	990.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013521, intron 1 of 1)	L1_Mus4|LINE|L1	5269.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	5.72492667915161	5.65474936978284	5.44188737631245	5.11731054772491	5.3624944548392	5.58840130928911	5.84774762930245	5.21773322962752	0.0534882334449918	0.866684815958364	0.950019210311976
Merged-chr13-40939226-4	chr13	40939120	40939320	+	979.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	21586.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	5.73567448549619	5.77417105942406	6.24126871057362	6.12592325130873	5.80703857901366	5.29397614866207	5.75591098858027	5.22090064147447	-0.710551697462465	0.0191606983223802	0.124305014683522
Merged-chr10-99081746-4	chr10	99081630	99081830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25352.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	7.33836216650616	7.69281092147522	7.430097321428	6.84702216460941	7.75171064534142	7.75344955030361	7.35395868766439	7.38555903182414	0.297798086447208	0.206132705120177	0.51005688450435
Merged-chr15-36719435-4	chr15	36719338	36719538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71494.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	6.78851463860642	7.2660686079465	7.19268244299349	6.97925125625822	7.2639074126233	7.19102946843549	7.4158022119086	7.32436722451255	0.317590825820063	0.107945137690512	0.362559597364667
Merged-chr11-97988932-4	chr11	97988822	97989022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152188)	TTS (NR_152188)	-2476.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	5.59366888878804	5.85847451359177	5.39018757525467	5.34630428124513	5.77297094114218	5.59937619429528	5.51162531629847	6.14763036039839	0.37761094847182	0.205465851524867	0.509044686588531
Merged-chr8-39005853-4	chr8	39005739	39005939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030254)	promoter-TSS (NM_030254)	-6.0	NM_030254	80286.0	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	6.75248869981468	6.77826995895425	7.12126735146081	6.9109395445322	6.68808952891462	6.72394492064896	7.0744331652001	6.76350995498137	-0.111634727626008	0.598458895885256	0.825981840347031
Merged-chr18-4922162-3	chr18	4922106	4922306	+	926.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	109720.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	3.46004897198198	3.37866674397074	3.46052892958032	3.39985200338792	3.39856215981203	3.40333532222971	3.21900741760939	3.40471857855907	-0.22088176843053	0.664790548691811	0.861073297406066
Merged-chr1-88635783-4	chr1	88635678	88635878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66413.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	6.82519038624701	6.9355010623228	6.49850593518771	6.20430530663978	6.60930269926655	6.60563480637389	6.54727227573869	6.52744883976029	-0.0887901035709582	0.71893966931141	0.887684154524562
Merged-chr1-131095812-4	chr1	131095695	131095895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	2048.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	6.71199433506029	6.70431210559671	7.22312793930365	6.99296270441555	6.20640057988736	6.43919585446182	6.50723455544832	6.60147596823261	-0.701947281200475	0.00241383900606473	0.0270148815428744
Merged-chr1-165739278-4	chr1	165739088	165739288	+	891.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24570.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	3.08852072239818	3.13762889059946	3.2053798260346	2.94627507219939	3.32029543459887	3.13578505656562	2.95195689142418	3.20362087496914	0.297995842933407	0.601120952833423	0.827071740947179
Merged-chr1-83747638-4	chr1	83747542	83747742	+	918.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEd|LINE|L1	-339442.0	NM_001356547	77629.0	Mm.154303	NM_172430	ENSMUSG00000026163	Sphkap	4930544G21Rik|A930009L15Rik|AI852220|SKIP|mKIAA1678	SPHK1 interactor, AKAP domain containing	protein-coding	3.90926973016486	3.71790657795707	4.20317447358297	4.24096816717859	4.27000268143116	4.03247828460154	4.09471591211014	4.47393626914945	0.467522790105701	0.294490390513286	0.60669911675381
Merged-chr1-85962303-3	chr1	85962203	85962403	+	911.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1248.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	3.6476289209489	3.76542984761268	3.47834635614635	3.71724747684853	3.51019361302161	3.96511998283182	3.5799965918753	3.53557121031785	-0.0200209529518215	0.967509077191176	0.988536511573071
Merged-chr4-7313380-3	chr4	7313284	7313484	+	835.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-247304.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	3.86427211204152	3.43124116421261	3.61208624736282	4.07355455151533	3.24057897006855	3.5495243834027	3.97652475154682	3.66468070278492	-0.429780567867025	0.439344477847595	0.727224328838519
Merged-chr10-77566899-4	chr10	77566825	77567025	+	810.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14730.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	4.09260469143529	4.74070493791177	4.09319419855238	3.82387469636385	4.682806127276	4.55213939375369	4.07613314721498	4.5732148516654	0.604945990797354	0.190774027398016	0.490220378922865
Merged-chr17-45686941-4	chr17	45686830	45687030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198167)	promoter-TSS (NM_198167)	581.0	NM_026732	68463.0	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	5.37181340957659	5.75464137659046	5.3155970613266	4.68510054625973	5.42640734403388	5.26947010572945	4.92169678072682	5.01757925946877	-0.273908988894458	0.466017729458512	0.746263717184356
Merged-chr10-115372363-1	chr10	115372263	115372463	+	668.0	f0_c57.idr	3' UTR (NM_025780, exon 3 of 3)	3' UTR (NM_025780, exon 3 of 3)	-9862.0	NM_001359472	67226.0	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	2.73574100159357	2.66194648897157	2.65962522583558	2.81245110604252	2.84749118131417	3.346724955429	3.48713528969895	2.94146148962149	1.89865033839879	0.00459293663398952	0.0446003597095143
Merged-chr19-5714245-4	chr19	5714153	5714353	+	831.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114595, intron 11 of 17)	intron (NM_001114595, intron 11 of 17)	9782.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	3.61630345528691	3.43565484559603	3.61680545283221	3.45670884265959	3.84472108918235	3.56218143922175	3.54887218216602	3.76436651646692	0.526079477303949	0.272258353056106	0.583764802661998
Merged-chr18-49990491-3	chr18	49990389	49990589	+	942.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	11062.0	NM_001177759	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	4.1750284761763	4.32312422299664	4.12990246268285	4.41382419871675	3.95631906336941	3.87491202034447	4.11208692685719	4.17309746639636	-0.631755560843793	0.128858862009861	0.399380073270456
Merged-chr12-52454098-4	chr12	52453988	52454188	+	892.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26521.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	4.78504021732806	4.42911611737455	5.17582292905731	5.29249556591219	4.68613507562562	4.52079091372842	4.87152156123806	4.89190155258444	-0.456785947373172	0.239936972751688	0.550403615440149
Merged-chr1-87639972-4	chr1	87639871	87640071	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	19659.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	5.33210273684765	5.41508432504158	5.33301254487413	5.65634739280481	5.38878386757631	5.2001455805261	5.58141106002511	5.70136815098984	0.0391313001533511	0.894212973147578	0.960481560907683
Merged-chr16-18249921-2	chr16	18249821	18250021	+	998.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001080999, exon 2 of 12)	exon (NM_001080999, exon 2 of 12)	1038.0	NM_001081000	15547.0	Mm.271798	NM_008307	ENSMUSG00000022721	Trmt2a	Htf9c	TRM2 tRNA methyltransferase 2A	protein-coding	3.54392865114295	3.41294000116217	3.59663038709324	3.45404241012917	3.41527295620346	3.42525986572551	3.36182556006399	3.82690304026629	0.0647075979630117	0.898782371638584	0.962303043708153
Merged-chr5-30913198-2	chr5	30913098	30913298	+	843.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133918)	promoter-TSS (NM_133918)	-588.0	NM_133918	100952.0	Mm.286375	NM_133918	ENSMUSG00000029163	Emilin1	5830419M17Rik|AW229038|BB105748|EMILIN-1|gp115	elastin microfibril interfacer 1	protein-coding	2.59943445712839	2.67690869370858	2.30559576890477	2.32522742088595	2.55233917108961	2.70707527329357	2.71487440129543	2.83880271664948	1.14823997832835	0.103549001524342	0.353601025383405
Merged-chr5-137652632-3	chr5	137652530	137652730	+	754.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303271, intron 11 of 12)	intron (NM_001303271, intron 11 of 12)	-6916.0	NM_010571	16369.0	Mm.24486	NM_010571	ENSMUSG00000047182	Irs3	AA408304	insulin receptor substrate 3	protein-coding	2.79655193843747	3.09098362460828	2.79681626552708	2.92766161664997	3.09323542009807	3.10278485731639	3.15183717295563	3.05183371842584	0.775518263230761	0.186108755211229	0.484014101364226
Merged-chr11-120149998-3	chr11	120149895	120150095	+	949.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361699, intron 1 of 16)	intron (NM_001361699, intron 1 of 16)	1356.0	NM_001361698	72055.0	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	3.40164537600762	3.33599017504395	3.6135195039908	3.57563406757521	3.50241211252138	3.25972280644217	3.59814701490055	3.40032505007655	-0.139066683049423	0.786986288956924	0.917257197669312
Merged-chr15-80225970-1	chr15	80225870	80226070	+	590.0	f0_balb.idr	Intergenic	B3|SINE|B2	-8110.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	3.63848879230763	4.00647971467836	3.85171497935478	3.61768807076049	3.66219122773693	3.86948416831854	3.73455523484559	3.98840254312529	0.0960572752897403	0.837169056811313	0.938189376728559
Merged-chr19-46864276-4	chr19	46864174	46864374	+	997.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102471, intron 4 of 6)	intron (NM_001102471, intron 4 of 6)	98077.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	5.81524507524609	5.84617956333864	5.67043970510433	5.70759485549594	5.56744065170257	5.39205089994933	5.93681577922608	5.71689708044906	-0.151851346902889	0.572169556574402	0.811128321794733
Merged-chr18-35919783-2	chr18	35919683	35919883	+	877.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45047.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	3.28830881854673	2.90579405454655	3.00708376071738	2.63798711321407	3.01377400251972	3.2980980684601	2.932602639088	3.06686577265226	0.446808559852072	0.481233761890746	0.756503799920103
Merged-chr6-128805332-4	chr6	128805260	128805460	+	875.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-16719.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	4.10281794508886	4.64517887777252	4.25293027821775	3.9177391067042	4.28917835810617	4.33315418103655	4.66496771470129	4.54356443861583	0.502555266952471	0.236980152476081	0.547058775153888
Merged-chr1-191643124-4	chr1	191643028	191643228	+	719.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67492.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	3.90195346503745	3.97406436079806	3.80539057587806	3.82962559624722	3.94798457539301	3.64062474373686	3.78975465502767	3.52315458951638	-0.384681224034122	0.41128124750306	0.706688905637184
Merged-chr8-64831844-4	chr8	64831741	64831941	+	762.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178633, intron 2 of 14)	intron (NM_178633, intron 2 of 14)	18083.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	4.41430641488264	4.1486631547867	4.23315105381726	4.55588942491974	4.1410018279224	4.20519300973825	5.01118890151817	4.41217084333535	0.307323586478291	0.485943438094378	0.759714246975224
Merged-chr14-77034731-4	chr14	77034664	77034864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172488, intron 3 of 7)	intron (NM_172488, intron 3 of 7)	1853.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	7.58734334904782	7.94370027936575	7.32401282139676	7.35226158575093	7.80455360452272	7.88381878336906	7.67692526982081	7.47269225462654	0.191199346455776	0.365095216164586	0.669793916220568
Merged-chr15-78383611-3	chr15	78383500	78383700	+	884.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163613, intron 3 of 4)	ORR1F|LTR|ERVL-MaLR	5169.0	NM_001163613	73376.0	Mm.73222	NM_028522	ENSMUSG00000062154	Tex33	1700061J05Rik|Ean57	testis expressed 33	protein-coding	3.33428191799518	3.26179414022149	3.59036085786425	3.29878496224144	2.94570720435827	2.89325730465259	3.52725178814743	3.49204777377617	-0.45963117506471	0.461873386516032	0.743501704400988
Merged-chr1-74434711-4	chr1	74434599	74434799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310662)	TTS (NM_001310662)	25315.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	7.55775649654481	7.76019353359564	7.5766185494804	7.53100158798715	7.4684688467292	7.70024908712873	7.22437386266246	7.28877208009284	-0.232418560304261	0.219760336606096	0.527382337133262
Merged-chr12-16882668-3	chr12	16882552	16882752	+	826.766663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-12326.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	3.67715895285513	3.79478892348507	3.44457978309696	3.35707817050787	3.83454751737591	3.79684298616744	3.71445693931186	3.91776798786762	0.758753108610232	0.11291507531694	0.371420623567672
Merged-chr8-14873197-4	chr8	14873104	14873304	+	917.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15332.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	4.94225362489234	4.54761024238078	4.86948699015668	5.52843001169609	5.13492891792097	4.75523944362966	5.20363913306041	4.93975219888646	-0.0430338084377206	0.912076595405273	0.967118042908353
Merged-chr7-135914125-1	chr7	135914025	135914225	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-197746.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	4.61434339848731	4.88341953067781	4.35487153288848	4.55164605364251	4.56978545472876	4.74782453160044	4.33611942553884	4.6881720031598	-0.0500364031705762	0.893180405237646	0.960067775059052
Merged-chr18-37908281-4	chr18	37908168	37908368	+	938.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305980, intron 1 of 27)	intron (NM_001305980, intron 1 of 27)	27208.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	4.92412959784443	5.02227863602105	4.45669853986518	4.91634817794914	5.11863026250498	4.78196098350073	5.15701352162074	5.26368474721082	0.468496728645165	0.170888682608651	0.464014859975631
Merged-chr4-6372398-4	chr4	6372262	6372462	+	916.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	L1MB5|LINE|L1	6682.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	3.46787192359958	3.34805965715958	3.63274179333388	3.64576089323828	3.56504218583501	4.03169199658543	3.3347024328753	3.40688586240188	0.246195195635319	0.644677924303845	0.850446280816639
Merged-chr3-96293510-3	chr3	96293387	96293587	+	948.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010186, intron 2 of 5)	intron (NM_010186, intron 2 of 5)	482.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	3.99980747363418	3.66448523955182	3.95433770978037	4.01242526947739	3.71288778853825	3.69273177309884	3.98274987850897	3.99794748248378	-0.191920534477157	0.674101036578342	0.866008871206355
Merged-chr3-142272701-4	chr3	142272537	142272737	+	949.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190854, intron 8 of 12)	PB1D11|SINE|Alu	-103212.0	NM_001277216	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	4.13182918446489	4.40547714247092	4.24147717530476	4.40059174698747	4.84571406542251	5.05937604174073	4.58451121651273	4.94875707747258	1.20500716128019	0.00114426213012157	0.0150050541930589
Merged-chr16-75962198-4	chr16	75962101	75962301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38583.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	5.25735884729673	5.4047498558972	5.74049100085682	5.29823755256541	5.33640859046572	5.22639140463662	5.68884216463465	5.46438134514431	0.0163359554072778	0.956400704145404	0.984662776561642
Merged-chr9-89222567-2	chr9	89222467	89222667	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359993, intron 2 of 2)	B1F1|SINE|Alu	11183.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	3.41264339769054	3.18664295485525	3.41315811172993	3.25861462340457	3.1994438799144	3.18706800986027	3.06666366251011	2.79253055940426	-0.949849238246554	0.113817191070486	0.373103335015803
Merged-chr11-4053785-2	chr11	4053685	4053885	+	835.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11068.0	NM_001029937	380683.0	Mm.296806	NM_001029937	ENSMUSG00000054986	Sec14l3	1110069O07Rik	SEC14-like lipid binding 3	protein-coding	2.79924188095887	3.14082541600868	2.79951022125865	2.80712916862482	3.18409352299342	3.22771039386228	3.1036249059776	2.99689590683575	0.985913268895008	0.0972250708843072	0.34164609599497
Merged-chr11-106276622-4	chr11	106276509	106276709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029467)	promoter-TSS (NM_029467)	-63.0	NM_029467	75870.0	Mm.159608	NM_029467	ENSMUSG00000020712	Tcam1	4930570F09Rik|AI429105	testicular cell adhesion molecule 1	protein-coding	7.55798428330028	7.13800822033575	6.61798093669707	6.68574464064575	7.32589495100444	7.64138171506883	7.24611934928698	7.01431380848155	0.372919687140335	0.159628585844264	0.447295611046722
Merged-chr10-98878032-4	chr10	98877913	98878113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36629.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	6.80039400164502	6.81315909619378	6.17972594209643	6.42984425980266	6.57769772214777	6.72923918132275	6.47043642396296	6.464989783122	-0.0209745763096399	0.930219363900566	0.974825301125973
Merged-chr17-40873694-4	chr17	40873574	40873774	+	991.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6884.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	4.78283564521682	4.0806029755842	4.85572294048472	5.07833149074328	4.63057453289266	4.95675718258626	4.89978072973211	4.7804299750758	0.119090260927788	0.770803526112896	0.910321191255463
Merged-chr8-69089967-4	chr8	69089862	69090062	+	967.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153054)	promoter-TSS (NM_153054)	-740.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	4.98235717330551	5.3405228882151	4.7428559147617	5.02973612382361	5.32638457222296	5.22926491866377	5.06374626279647	5.40979155279318	0.4099787087278	0.198431886488265	0.499971088437105
Merged-chr2-79428875-4	chr2	79428775	79428975	+	851.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001048176, exon 1 of 13)	exon (NM_001048176, exon 1 of 13)	113.0	NM_001048176	228094.0	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	4.02970068130522	4.29177796174182	3.85546472242483	4.40474710671058	4.24827456260881	4.49600204035	4.42768338343244	4.72799204435964	0.709600743469857	0.0984962520736274	0.343994301133918
Merged-chr2-71939107-4	chr2	71938998	71939198	+	819.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42117.0	NM_001204167	56508.0	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	3.77154441797558	3.80643333738963	3.60234066970661	3.57480762559325	4.13512802256528	3.89231328240724	4.07917047222195	3.76994140294081	0.857309926884345	0.0563385261648423	0.248550883468905
Merged-chr18-61401863-4	chr18	61401759	61401959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1428.0	NM_133249	170826.0	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	6.24252458368741	5.80952413718058	5.79877796713609	6.12794729186796	5.82905909913707	5.4479028694128	5.96947301008856	5.46441863877378	-0.497678775185897	0.0780077990085191	0.30203225915491
Merged-chr9-57525787-4	chr9	57525693	57525893	+	977.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007747, intron 1 of 4)	ID_B1|SINE|B4	4561.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	5.24705115503552	5.25506118467964	5.05624125486803	5.29722246244467	5.1282866301634	4.79135867322946	5.13047805924262	5.24431406877753	-0.253897789626495	0.409789020315638	0.70525942551561
Merged-chr17-28770152-5	chr17	28770045	28770245	+	736.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011950, intron 2 of 11)	CpG-6188	828.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	3.60559533393038	3.08859313298937	3.25233588865921	3.24276669301562	3.21783531653422	3.24123744700516	3.24018124818183	3.19110560641564	-0.309250962206374	0.576831110833762	0.813789860645106
Merged-chr14-105285403-3	chr14	105285293	105285493	+	886.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029561, intron 1 of 7)	Lx8|LINE|L1	26720.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	2.7659846212135	3.06077992442844	3.33144611038065	3.36560342063197	3.20100465649757	3.15649723209989	3.21279269771359	3.10807723183136	0.0402698357488354	0.948090505408538	0.981359015857754
Merged-chr12-80114539-4	chr12	80114454	80114654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1541.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	5.69064692506961	5.87627424352767	5.52936378001109	5.15345299690416	5.92254773749255	6.13745949106623	5.73617845252373	5.52547834840121	0.454433471638402	0.138171798895183	0.413568902517326
Merged-chr14-51063916-4	chr14	51063836	51064036	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Leu-CTY|tRNA|tRNA	-6694.0	NM_001011875	497106.0	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	5.56599961139727	5.68345759885889	4.9315105883081	5.08588104452925	5.79659362380226	5.22846197894196	5.29253457868708	5.25300351870217	0.138193356447642	0.690236833399189	0.873785324867519
Merged-chr15-62106707-4	chr15	62106594	62106794	+	973.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	67437.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	5.80103872432705	5.06136113037309	5.27286080548896	6.03406382350284	5.08801117613925	5.4182179543039	5.18001366423185	5.84030415535979	-0.345469239760223	0.3496918035829	0.657179883362987
Merged-chr17-5800330-1	chr17	5800230	5800430	+	1000.0	f0_balb.idr	intron (NR_045080, intron 1 of 1)	intron (NR_045080, intron 1 of 1)	840.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	5.10240174477903	5.35321521588832	4.93175100332162	4.69106464996097	5.12742498715189	5.03278752122153	4.90819501433581	5.16228910214871	0.0655319825928736	0.846873196146988	0.942045183918023
Merged-chr16-21205240-1	chr16	21205140	21205340	+	884.3333130000001	f0_balb.idr	exon (NM_010143, exon 1 of 16)	exon (NM_010143, exon 1 of 16)	445.0	NM_010143	13845.0	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	3.5563078564628	3.99866845691467	4.13551319690066	3.97147485691467	3.81155448195217	4.2170083125823	3.88728693317518	3.99899635427723	0.12853495708383	0.780511835821516	0.914536684873272
Merged-chr16-91764201-3	chr16	91764108	91764308	+	845.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	34837.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	4.30772482891144	4.18801239632181	3.85176792045318	3.98824631078357	3.96705824802217	4.07963451352259	3.83668413394643	4.00428970634974	-0.313619750894006	0.469282314887556	0.748251025868274
Merged-chr19-4283890-4	chr19	4283796	4283996	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026720)	promoter-TSS (NM_026720)	-759.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	5.46978380630447	5.02101563610255	5.08616532665897	5.11806396638982	4.89914616110527	5.12510799086307	4.69400899044195	4.62409424653452	-0.64575356653426	0.0567492822720818	0.249558702758217
Merged-chr11-54957151-4	chr11	54957052	54957252	+	881.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199275, intron 1 of 18)	intron (NM_001199275, intron 1 of 18)	5788.0	NM_021327	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	4.64878816233231	4.20104537231606	4.34224506391167	4.46551343802003	4.58408216429267	4.33154821477657	4.27898023673954	3.87541177356057	-0.287009264569633	0.501393894455592	0.769203095317685
Merged-chr9-50601823-3	chr9	50601723	50601923	+	669.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025848, intron 1 of 3)	MTD|LTR|ERVL-MaLR	2026.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	3.75161375771241	3.34081746158797	3.18773628670428	3.39387962542232	3.0602615182131	3.36397565783033	3.23895240933049	3.36606259843218	-0.629115525572569	0.26199111823241	0.573982193095345
Merged-chr16-85114098-4	chr16	85114000	85114200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 2 of 15)	MLT1A|LTR|ERVL-MaLR	59607.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	7.29948478769014	7.26599791643168	7.43897830377762	7.47114747116389	7.05317898539133	7.15930677763179	7.49197165286807	7.19802370552988	-0.194926786312895	0.311953055347707	0.623813898793094
Merged-chr2-156179627-4	chr2	156179528	156179728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291115)	promoter-TSS (NM_001291115)	-48.0	NM_001291115	170791.0	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	5.54160888297552	5.8024109311763	5.39052673247554	5.76496270790112	5.82138705516383	5.82787133729736	5.57053769475	6.08767355188035	0.312681042202515	0.257035814745294	0.568802111065118
Merged-chr2-122381130-4	chr2	122381015	122381215	+	896.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12197.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	3.67928388950128	3.78224626488681	3.78990219066758	3.99978009679888	3.75629583083317	4.01277286566042	3.66594876540704	4.15205494631667	0.21602997109855	0.644262761844167	0.850134943556153
Merged-chr3-10289874-2	chr3	10289774	10289974	+	603.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_029310, intron 1 of 5)	intron (NM_029310, intron 1 of 5)	11309.0	NM_001357159	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	3.61080078290359	2.80417719186769	3.14695550364512	3.12303462582911	3.14322445064501	3.38042498417082	3.2527250448041	3.14536699229185	0.120985451836468	0.844179780720534	0.94088019607581
Merged-chr4-132977009-4	chr4	132976915	132977115	+	983.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010208, intron 1 of 12)	intron (NM_010208, intron 1 of 12)	2920.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	6.03102765226009	6.4684555327947	5.68699086912113	5.48660114723421	5.93536433480173	6.03523050027072	5.45970325256395	5.38742013702586	-0.373410977293944	0.270662599180223	0.58243909949623
Merged-chr10-41891516-1	chr10	41891416	41891616	+	764.0	f0_balb.idr	intron (NM_001013370, intron 1 of 9)	intron (NM_001013370, intron 1 of 9)	4077.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	3.86590913225358	3.6725019458189	3.7040198688601	3.93612267404133	3.93501380171642	4.30640400297066	3.79910981799992	3.914073504227	0.52764620415402	0.247609821152477	0.558805232210642
Merged-chr8-122985502-3	chr8	122985411	122985611	+	593.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	56773.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	3.37053166662897	3.18343614195095	3.37108218059654	3.07329349721324	2.86300996863867	2.66616400523627	2.71397038364365	2.79377487287924	-2.2633355932737	0.00122829378718085	0.0158557713960366
Merged-chr10-94223857-3	chr10	94223753	94223953	+	961.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24844.0	NM_025551	66414.0	Mm.27886	NM_025551	ENSMUSG00000020022	Ndufa12	2410011G03Rik|AW112974	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12	protein-coding	3.9351304596671	4.76426998094555	4.51274402728724	4.59679620538148	3.05009035821467	3.49332954238632	3.63420977911512	3.36687079115113	-3.72088119466534	1.1319257601427e-08	5.94169201188769e-07
Merged-chr2-4450060-4	chr2	4449943	4450143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	49067.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	6.24095441448575	6.49227333903614	6.88990371506651	6.3670995745974	6.77928104939612	6.59243783312014	6.61149473329713	6.46383397555291	0.158748666441811	0.502916697040879	0.770059040429938
Merged-chr16-14123372-3	chr16	14123307	14123507	+	844.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081154, intron 21 of 26)	intron (NM_001081154, intron 21 of 26)	35867.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	2.8890043366989	3.03266672279123	3.00569143832607	3.24146274917446	2.65294132989699	2.56420196521658	2.87908624920719	2.69153984539983	-1.71996833563008	0.0124570986190955	0.0922092161614598
Merged-chr5-122396999-2	chr5	122396899	122397099	+	895.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 2 of 6)	intron (NM_019824, intron 2 of 6)	5121.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	2.88168811376335	2.90036268359832	2.94525879982642	2.68854418569893	2.98790228700334	3.1160058785833	2.99411772707041	3.00397410970218	0.778785994915414	0.18654424694087	0.484582803058514
Merged-chr1-64197852-4	chr1	64197740	64197940	+	937.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76451.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	4.19806958904619	4.66566260598326	4.40744899331819	4.46692812351469	5.26289858547339	4.99127785455801	4.64782769769987	4.88448946881879	1.09494225332153	0.00307242436105317	0.0325822547073008
Merged-chr5-149678370-4	chr5	149678260	149678460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081204, exon 1 of 15)	exon (NM_001081204, exon 1 of 15)	103.0	NM_001081204	381694.0	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	7.14847515804701	7.16816563813135	7.8771275201074	7.17088276546582	7.47137204370287	7.68979611612338	7.37279600912634	7.32370061432207	0.128523676298325	0.57755141055306	0.814166268489505
Merged-chr13-52100245-4	chr13	52100173	52100373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045061, intron 3 of 7)	intron (NR_045061, intron 3 of 7)	3532.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	7.02114852661525	7.16687457502064	7.36867270343985	7.21843754896995	6.9973224023603	6.90691360205669	6.97447104133756	6.94034260541961	-0.334337865310152	0.0770009313346418	0.300004021432683
Merged-chr7-143706879-4	chr7	143706772	143706972	+	996.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199227, intron 7 of 21)	intron (NM_001199227, intron 7 of 21)	-20997.0	NR_131763	79201.0	Mm.290780	NM_024290	ENSMUSG00000037613	Tnfrsf23	SOB|TNFRSFH23|Tnfrh1|Tnfrsf1al1|mDcTRAILR1|mSOB	tumor necrosis factor receptor superfamily, member 23	protein-coding	5.75750906647723	5.68952980805682	5.28006194214181	5.50949275013391	5.81466945858771	5.28012489813377	5.84049810246071	5.82278000900632	0.246257361059009	0.394558060929542	0.693682147756976
Merged-chr2-164067284-3	chr2	164067207	164067407	+	930.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291155, intron 1 of 6)	intron (NM_001291155, intron 1 of 6)	3795.0	NM_025996	67145.0	Mm.23173	NM_025996	ENSMUSG00000018322	Tomm34	2610100K07Rik|TOM34	translocase of outer mitochondrial membrane 34	protein-coding	3.84776170269202	3.51723463338323	3.59804470778837	4.16317565151494	3.60302190503857	3.53573699897803	3.27845247365674	3.70198781240761	-0.864770414285506	0.108036864259841	0.362639228165503
Merged-chr17-34440023-2	chr17	34439923	34440123	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163855, intron 9 of 23)	intron (NM_001163855, intron 9 of 23)	35914.0	NM_030746	632126.0	Mm.484958	NM_030746	ENSMUSG00000058435	Btnl4	Btn3a3|EG632126|NG11	butyrophilin-like 4	protein-coding	3.11304099505417	2.98635580967433	2.52318225614726	2.56315944286716	2.71696803870425	2.99363419037228	2.87186362046051	3.11158216999957	0.481743131181045	0.488001366804523	0.761126159857708
Merged-chr17-50528170-3	chr17	50528072	50528272	+	834.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	18625.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	4.09474669987115	4.06572070608751	4.13702315343427	3.88329659092185	3.83063154775218	3.82081626464527	3.6876303130125	3.57964085351788	-0.872203761474981	0.0568577441859059	0.249803147810135
Merged-chr3-38571330-3	chr3	38571226	38571426	+	727.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-86510.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	3.31270082847193	3.71219752206923	3.75146145308807	3.06383527736998	3.35260349378142	3.61324061914679	3.58851591886977	3.70180325939292	0.265189254711019	0.635094877957427	0.84559330935525
Merged-chr5-66088454-4	chr5	66088354	66088554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	9725.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	6.99122020151452	7.33553383866516	6.68870263533188	7.27544276359582	7.38912237882566	7.29156356627009	6.96984744473976	6.88028939453583	0.065290941677274	0.780154395767712	0.914348108890036
Merged-chr17-74316431-4	chr17	74316378	74316578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146223)	promoter-TSS (NM_001146223)	-45.0	NM_001146223	66310.0	Mm.28536	NM_024428	ENSMUSG00000024067	Dpy30	2810410M20Rik|C87842	dpy-30, histone methyltransferase complex regulatory subunit	protein-coding	7.58953975393457	7.49747469439146	7.22868728371273	7.46017166385707	7.42025439229265	7.46147625857352	7.33157821280059	7.488502742184	-0.0346265378465956	0.846463342134307	0.941954402290774
Merged-chr18-77786963-2	chr18	77786863	77787063	+	924.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7587.0	NM_013831	19201.0	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	3.1349117733748	3.57268979110489	2.98954903119512	2.8872622767417	3.59904272385957	3.81564105454118	3.58313321939379	3.3269654278288	1.44966458094832	0.0143092787504682	0.10144623029677
Merged-chr16-91769339-2	chr16	91769239	91769439	+	784.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	39968.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	2.941003584615	2.88873346237269	2.88188152752165	2.82354237882371	2.92751859601927	2.98929702421798	2.74569546548521	2.68412234224659	-0.163385366984447	0.791360718124289	0.919050824109746
Merged-chr11-100822586-4	chr11	100822486	100822686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011489)	promoter-TSS (NM_011489)	-16.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	6.20334823684062	6.40055138821044	6.33249088872285	6.11860609589836	6.18568464267842	6.14941137685517	5.84662211961476	6.05751871690774	-0.290824775899309	0.22179873776748	0.529885626486925
Merged-chr15-12668010-3	chr15	12667900	12668100	+	697.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75444.0	NM_001081064	68070.0	Mm.423205	NM_001081064	ENSMUSG00000022197	Pdzd2	4930537L06Rik|A930022H17Rik|Gm21706|Gm82|Pdzk3|mKIAA0300	PDZ domain containing 2	protein-coding	3.32107151465154	3.04644189337054	3.46777172828472	3.04747118081396	3.09618995215174	2.93176341611817	2.88872786584299	3.26687198423789	-0.672902996858598	0.268838910787188	0.580420535930889
Merged-chr13-51849708-2	chr13	51849608	51849808	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3033.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	4.66188846844077	4.75601102899973	4.4425324290971	4.68872419040092	4.86570722862132	5.18336255188146	4.51470972656552	4.88184398630981	0.480036048060828	0.178817574187922	0.474768029882581
Merged-chr7-92975501-4	chr7	92975394	92975594	+	912.6166380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100241.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	4.60916796455982	4.13942064111051	4.5312290852387	4.62619042229021	4.58869597514621	4.4871293951985	4.33862753718204	4.81680967424661	0.165045333912146	0.669661843495828	0.86357079102718
Merged-chr11-31671937-4	chr11	31671832	31672032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024919)	promoter-TSS (NM_001024919)	-70.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	7.56204714926445	7.64259293523996	7.28732612020738	7.63004101358718	7.64031537588331	7.44272997952685	7.76607859228992	7.27119035193675	0.00512496544840416	0.979112801069781	0.992606608380485
Merged-chr1-64121721-4	chr1	64121636	64121836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033563)	promoter-TSS (NM_033563)	-347.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	8.99766825588565	9.17200305105409	9.15760534628199	9.10310822495493	9.09804338732323	9.12898285069594	9.31569930408952	9.09359798810366	0.0643158803721825	0.6517254691344	0.854170845276832
Merged-chr8-88272626-4	chr8	88272541	88272741	+	894.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007406, intron 1 of 27)	CpG	238.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	4.37071476171729	4.52873995193393	4.53372039335426	4.31633511819987	4.48168363367204	4.26035725282933	4.1681002958661	4.45228735017733	-0.185832047749439	0.62731910912813	0.841125213379356
Merged-chr10-17691852-3	chr10	17691738	17691938	+	993.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-31390.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	3.7965974505916	3.14863937896266	3.37279038645088	3.64932184075763	3.17568403809289	3.30542654440221	3.18216102564472	3.12571650345932	-1.1649560172492	0.0430869588386273	0.21121142225477
Merged-chr7-16120064-4	chr7	16119892	16120092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133727, exon 1 of 12)	exon (NM_133727, exon 1 of 12)	116.0	NM_133727	70394.0	Mm.41101	NM_133727	ENSMUSG00000006021	Kptn	2310042D10Rik|2E4|C030013F01Rik	kaptin	protein-coding	5.50780213313392	5.98477253155364	5.71165247855937	5.63035629742513	6.0188106206253	6.50765965794926	6.0701293808556	6.07726765957998	0.724369651087248	0.00644305990356434	0.0572190344199384
Merged-chr3-82375452-4	chr3	82375369	82375569	+	895.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356457, intron 6 of 13)	intron (NM_001356457, intron 6 of 13)	17282.0	NM_001356457	213582.0	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	4.56696659393863	4.21644405453924	4.72039278411886	5.07110589275792	4.5630953512032	4.57064703725704	4.32834886077256	4.60462046257864	-0.38636338387292	0.342864002041049	0.6516462545027
Merged-chr10-78144327-4	chr10	78144235	78144435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25433.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	5.62311409230228	5.38623910737638	5.92678710738923	5.84054002068545	5.60086462830506	5.47495328333965	5.72010194570694	5.69667002772416	-0.149782455131996	0.589004996870731	0.820140978349767
Merged-chr6-55431102-3	chr6	55431014	55431214	+	964.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-20864.0	NM_001025372	11517.0	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding	4.99796562241768	4.94048715040032	4.88329738026099	5.31462434423587	3.45140146143127	3.66518353337769	3.59845036469641	3.60941804132938	-4.63849602184706	2.30523575086984e-13	2.79530452318848e-11
Merged-chr2-153492704-4	chr2	153492616	153492816	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134300, intron 1 of 10)	CpG	37255.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	5.48142294711221	5.1032446826967	5.37839926334709	5.22870379799381	5.12741221464828	5.06596004022284	5.11511004417084	4.92359609908458	-0.436336790123425	0.152234560753918	0.436210450461058
Merged-chr13-106812235-4	chr13	106812095	106812295	+	901.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360897, intron 30 of 30)	intron (NM_001360897, intron 30 of 30)	124763.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	4.66252301173495	4.24352999331097	4.73198094630845	5.06470021500263	4.25775375774316	4.10716775480457	4.18226633328885	4.09256459414308	-1.30486414413291	0.00209631225915521	0.0242505136184639
Merged-chr18-34751642-4	chr18	34751541	34751741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009860)	promoter-TSS (NM_009860)	-108.0	NM_009860	12532.0	Mm.286602	NM_009860	ENSMUSG00000044201	Cdc25c	Cdc25	cell division cycle 25C	protein-coding	8.40988719188885	8.58922867697689	7.94601707234865	8.3778413181966	8.48150431826815	8.48088977331109	8.44728944790278	8.34205616738827	0.107359246425617	0.551190071590783	0.798837168776829
Merged-chr2-122377478-4	chr2	122377372	122377572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8554.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	7.94371482329211	7.91306851712259	8.01315384842079	7.56314528963935	8.09698749927786	7.93406975902683	7.87143116430084	8.15748381230611	0.211317426685408	0.249355383111863	0.560328612484111
Merged-chr10-8520618-4	chr10	8520449	8520649	+	784.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1724.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	3.37009924471837	3.09716126200539	3.31838093878166	3.66117140866617	3.00639260729104	3.05942927690393	2.94281418474691	3.14599379326731	-1.38508473657679	0.0216085718472437	0.134753507579723
Merged-chr8-115611695-4	chr8	115611614	115611814	+	930.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95180.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	4.22756710814671	4.09683281028899	4.08616689499949	4.14268978176003	4.26973069202713	4.39872539432507	4.37555559548078	4.22560935835747	0.441435637596096	0.252232649084405	0.56356496866418
Merged-chr17-65717709-4	chr17	65717627	65717827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 2 of 6)	intron (NM_133685, intron 2 of 6)	55025.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	7.4621154967862	7.37747882594967	7.7113596555978	7.81717809383187	7.67517533858899	7.47394553217673	7.94604178031993	7.73781320147424	0.141406897350689	0.473861959911427	0.751419042579231
Merged-chr2-102682355-1	chr2	102682255	102682455	+	846.0	f0_c57.idr	intron (NM_001077514, intron 1 of 10)	intron (NM_001077514, intron 1 of 10)	23666.0	NM_001361018	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	3.8592088845839	3.17680127398042	3.19903017607233	3.11274967246527	3.9809937816906	3.77784672805905	4.09608169491888	4.07457341673776	1.92714474952528	0.000428694562193009	0.00680509595056561
Merged-chr13-33001850-3	chr13	33001746	33001946	+	930.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-2695.0	NM_009256	20723.0	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	3.5877894886541	3.11916999987874	3.47373284938959	3.10215016773717	4.03413793791815	3.53122744165005	3.62649118068337	4.04249803128043	1.62499081550263	0.00249190524056832	0.027683989873328
Merged-chr2-119016017-4	chr2	119015897	119016097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13396.0	NM_199310	269336.0	Mm.292465	NM_199310	ENSMUSG00000039983	Ccdc32	Gm631	coiled-coil domain containing 32	protein-coding	7.71569570126152	7.63843415743389	7.67647075816391	7.98888273159147	7.55525345245418	7.34437368416968	7.63896596429821	7.56828418202647	-0.316144730553218	0.0847825873491627	0.316834135818032
Merged-chr2-62681173-4	chr2	62681061	62681261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145523, intron 3 of 7)	HAL1|LINE|L1	16834.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	6.10429165195343	6.26156573076649	6.0640541323738	5.37857009172317	6.36982549895711	6.23985408517474	6.26136030429927	5.75258405641935	0.310305962662594	0.307245483021266	0.619449859505348
Merged-chr6-124696018-4	chr6	124695917	124696117	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 1 of 11)	intron (NR_149320, intron 1 of 11)	16161.0	NM_013536	14791.0	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	4.89508665559851	4.89567181832589	4.93197160823142	4.9128036131997	5.2597569495096	4.87608534828654	4.97700023315498	4.99781804333365	0.274001441477052	0.386336622027764	0.687552275421561
Merged-chr6-85155192-5	chr6	85155082	85155282	+	792.366638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-17418.0	NM_011467	20751.0	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|Gm10328	sepiapterin reductase	protein-coding	3.42784639277061	3.30026451484087	3.37361175031268	3.26106896333334	3.1049206541331	3.30642209802481	3.41438861995603	3.57740181150469	0.0698584371809323	0.896093829918231	0.960994089571403
Merged-chr2-73047190-4	chr2	73047075	73047275	+	935.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66729.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	4.52678435864702	4.89139503544716	4.5697361979913	4.82527631719934	4.74990157309258	4.56896230559207	4.62869185223469	4.48103370710229	-0.228698352809575	0.521762644938742	0.781633693313439
Merged-chr5-8917289-4	chr5	8917190	8917390	+	998.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008830, intron 9 of 27)	intron (NM_008830, intron 9 of 27)	23569.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	5.3931169303076	5.33249178559517	5.83444795045135	6.2266582827926	5.56195420888113	5.26340119431038	5.56594828005894	5.53627585887453	-0.469523671612991	0.154991881807374	0.440458623993574
Merged-chr9-106310047-4	chr9	106309919	106310119	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	28958.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	6.19061538384469	5.81037681809288	5.84172207335476	6.45902326085927	5.31205332200831	4.98743304756618	5.45298950883597	5.17734679284635	-1.46262096404437	2.07428509562351e-06	6.76032686911109e-05
Merged-chr1-43939494-4	chr1	43939385	43939585	+	811.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009418, intron 1 of 29)	intron (NM_009418, intron 1 of 29)	5491.0	NM_009418	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	4.5915051634965	4.35370091429045	4.48525744813498	4.37128376199109	4.09055106807326	4.22122972880855	3.97449939256728	3.87427272089836	-1.01003423889782	0.0138055349085854	0.0990115462839758
Merged-chr11-88869634-3	chr11	88869546	88869746	+	658.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126433, intron 3 of 4)	intron (NR_126433, intron 3 of 4)	-5060.0	NM_001042541	11640.0	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding	3.40379603357644	3.2919290220724	3.27652765178748	3.46232964561617	3.73978634541328	3.63754240114152	3.84334631147505	3.72419203614318	1.17755731539301	0.0168231123348978	0.113718168365213
Merged-chr8-79038333-3	chr8	79038248	79038448	+	829.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 1 of 14)	intron (NM_001294279, intron 1 of 14)	9911.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	3.46517842306253	3.29235042326992	3.76110983156061	3.79184146685853	3.26267693106381	3.33481236860991	3.39630760454626	3.46376305769089	-0.812840613618003	0.129069350461147	0.39973336201543
Merged-chr11-43223723-3	chr11	43223624	43223824	+	884.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176999, intron 14 of 22)	intron (NM_176999, intron 14 of 22)	73847.0	NM_176999	319767.0	Mm.252339	NM_176999	ENSMUSG00000055415	Atp10b	5930426O13Rik|9030605H24Rik	ATPase, class V, type 10B	protein-coding	4.19477494980789	3.67852444730807	4.06834352736202	3.48467633006577	3.78530290689325	3.77267746312262	4.25272473597324	4.02044092154526	0.257802451214189	0.605927407757118	0.829218406549364
Merged-chr9-95681507-4	chr9	95681444	95681644	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029620, exon 5 of 9)	exon (NM_029620, exon 5 of 9)	43916.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	4.86919202556587	4.82329988182908	4.78898135171483	4.69772252349192	5.2570324278077	5.15946980682152	5.75247444518812	5.20939828962965	1.09768809335232	0.000635862492853194	0.00934738876059427
Merged-chr11-85691482-4	chr11	85691390	85691590	+	979.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	28254.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	5.52721762273785	5.34087125128381	5.87561088187579	6.15783326042487	5.13221586556129	5.30388992623904	4.94511939808171	5.2251607648324	-1.09642698110254	0.000807592255961156	0.0113288659413688
Merged-chr12-3739276-4	chr12	3739164	3739364	+	788.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-67716.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	3.59878170281512	3.675157502851	3.92085749020932	3.62065100287617	3.70903485693443	3.99460302658045	4.03711794948357	4.05323601844749	0.708850004723387	0.119333127974816	0.382234394569319
Merged-chr13-8709277-4	chr13	8709181	8709381	+	898.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 6 of 10)	intron (NR_110345, intron 6 of 10)	161763.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	4.96268857403683	4.91929498431484	5.56711627949031	5.60421672250268	4.49242747096497	4.58921224722384	4.66858061158496	4.88782970759813	-1.29164090291631	0.000495585213016812	0.00766187225832399
Merged-chr1-43337538-4	chr1	43337441	43337641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108210.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	5.7488418705784	5.33058832594314	6.18603498714725	6.14388661950032	5.59184772527856	5.38457999536095	5.79249785113005	6.03293471701648	-0.294746161517458	0.356962284500667	0.663238634370609
Merged-chr3-121369649-4	chr3	121369549	121369749	+	995.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-56892.0	NM_028044	71994.0	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	4.82368632952389	4.84907862982836	4.93998523359202	4.9407024523536	4.82732575093032	5.2533034911953	5.4690455082865	5.3427471603155	0.65169000680321	0.0478579172590623	0.225643505041096
Merged-chr14-47259133-4	chr14	47259041	47259241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360532, intron 13 of 24)	B1_Mm|SINE|Alu	17716.0	NM_001360532	218973.0	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	5.07562683572862	5.4216925594596	4.93049550752966	5.11118391224265	5.17683503906254	5.31759406467651	5.1818740164268	5.26464081733069	0.154283807601177	0.612075110297061	0.832680684364583
Merged-chr4-132535603-4	chr4	132535500	132535700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172400)	promoter-TSS (NM_172400)	41.0	NM_172400	68598.0	Mm.29685	NM_172400	ENSMUSG00000054405	Dnajc8	1110021D09Rik|2010009J04Rik|AL024084|AU019262|AU044514	DnaJ heat shock protein family (Hsp40) member C8	protein-coding	5.6624805034209	6.07327525844025	5.81823122421094	5.45500643536345	6.23468906954509	5.97008820537264	5.60734568484652	6.25907180508724	0.457912657423059	0.11593107865481	0.376739729596271
Merged-chr15-90623705-4	chr15	90623604	90623804	+	957.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357979, intron 3 of 18)	intron (NM_001357979, intron 3 of 18)	55684.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	5.84734599168711	5.69473769305401	5.57771965903004	5.88259147395681	4.63777561408158	5.23705480380643	5.06844268706275	5.05256943813891	-1.38328802071277	7.56789311085683e-06	0.000214868393991894
Merged-chr10-99422466-3	chr10	99422379	99422579	+	664.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	159248.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	3.42093645137897	3.68630873947001	3.36300267408459	3.55813440129913	3.46398169085794	3.53467206731812	3.56771931261572	3.30068902855747	-0.163065681888415	0.747961702193748	0.900777917633449
Merged-chr6-85434080-4	chr6	85433989	85434189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144918, intron 1 of 12)	intron (NM_144918, intron 1 of 12)	2113.0	NM_144918	232187.0	Mm.219946	NM_144918	ENSMUSG00000033706	Smyd5	AW536703|NN8-4AG|Rai15|Rrg1	SET and MYND domain containing 5	protein-coding	6.54423136094065	6.67061968490526	6.52872446266161	6.71546785715884	6.68901075266242	6.27296607696416	6.72364652527026	6.93480820462238	0.0800684360318682	0.722862320815468	0.88928524667289
Merged-chr19-9943238-7	chr19	9943207	9943407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37293.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	5.20567423908928	5.54364817891731	5.50986080124257	5.50409256827746	5.57237695448574	5.38398638140695	5.2474059919343	5.70493784132551	0.0690616328219011	0.810038963657655	0.926776956547369
Merged-chr4-101146282-3	chr4	101146190	101146390	+	864.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183024, intron 11 of 11)	intron (NM_183024, intron 11 of 11)	77252.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	3.02021456288188	3.23471143540481	3.40773579472792	3.28313675970657	3.76745923899419	3.3410168333742	3.73176221087341	3.3487340996231	1.09598497194201	0.0455168277916847	0.218583341342891
Merged-chr11-116319207-4	chr11	116319083	116319283	+	976.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12433.0	NM_001347636	53413.0	Mm.22530	NM_016857	ENSMUSG00000020792	Exoc7	Exo70|sec70	exocyst complex component 7	protein-coding	5.29895836641359	5.0547930840087	4.74997962337289	5.20668557261614	5.30643387223527	5.80843889428551	5.08188022621479	5.48938692805837	0.619499504378546	0.0622605381291648	0.264063682435562
Merged-chr11-59306955-3	chr11	59306858	59307058	+	610.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139298)	promoter-TSS (NM_139298)	28.0	NM_139298	216795.0	Mm.218794	NM_139298	ENSMUSG00000000126	Wnt9a	Wnt14	wingless-type MMTV integration site family, member 9A	protein-coding	3.90712541038766	3.66513453636063	3.71969485222664	3.69034594202399	3.64567558926599	3.4872118185867	3.75343675578819	3.55600345024148	-0.394643755596065	0.405848851480378	0.702456276834042
Merged-chr15-66730151-1	chr15	66730051	66730251	+	565.0	f1_balb.idr	intron (NM_009375, intron 27 of 47)	MLT1H|LTR|ERVL-MaLR	59381.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	3.21825899351611	2.77632611662671	2.63519431424428	2.83464933854073	3.03047736694851	3.27913330924455	3.15196643075214	3.0495303610078	1.02160251541318	0.105456056736965	0.357406754712905
Merged-chr14-16219249-1	chr14	16219149	16219349	+	582.0	f0_balb.idr	Intergenic	L1MA5|LINE|L1	24082.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	3.20184509137924	3.33610389089403	3.26114013046474	3.25633442582211	3.42433085757724	3.31286499417497	3.30465167773742	3.07456042506539	0.094677299849279	0.859926902289587	0.947071700254788
Merged-chr3-89910138-4	chr3	89910040	89910240	+	829.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	3056.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	3.94739420551081	3.61694836066311	3.70038941753673	3.87913885653227	3.77795268762594	3.76155327937625	3.73892557383548	3.9893628736042	0.0666074361132609	0.8841128137196	0.956390337098447
Merged-chr10-68141783-3	chr10	68141693	68141893	+	920.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	136933.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	4.23549451764135	3.67978942345472	3.97303075441085	3.82260007939272	3.28727150050664	3.38223353649284	3.25556755633248	3.46344389836297	-1.98553725181014	0.000265392040748192	0.0045816978094629
Merged-chr6-35544517-4	chr6	35544422	35544622	+	956.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I-int|LTR|ERVL-MaLR	-4634.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	4.79795843748167	4.92660739196964	4.42808548369424	5.05733335978414	4.86677324306065	4.4590952126093	4.66485130549307	4.56092245871054	-0.379338725986282	0.311377842617772	0.623377495069201
Merged-chr2-69077432-4	chr2	69077326	69077526	+	934.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 8 of 10)	intron (NM_001347161, intron 8 of 10)	-58374.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	4.90070060460906	4.58266214072264	5.00432851488746	5.15177864255765	4.7632463382319	4.8019954821598	5.01213668446312	5.06500105231176	-0.0530489814494052	0.87789835525394	0.954314763971155
Merged-chr8-115407729-3	chr8	115407630	115407830	+	852.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	299164.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	3.79986017569059	3.44806234730822	3.68458162026863	4.2135209403701	4.45892118077407	4.22216719622038	3.83902334515354	3.95470537815024	0.821685207372798	0.118548500037122	0.380903881376893
Merged-chr16-36704900-4	chr16	36704812	36705012	+	912.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 1 of 7)	intron (NM_001285788, intron 1 of 7)	10934.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	3.87311471405954	4.26031779971786	4.26306940215404	4.15185324647008	4.26464155150681	4.20697804861954	4.01700484758838	4.12793518759323	0.0338079353353987	0.93462520955898	0.976356212091203
Merged-chr3-127409051-3	chr3	127408972	127409172	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001327939)	promoter-TSS (NM_001327939)	-14.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	4.49033126556961	4.34231664074038	4.49106953224519	3.85465376089689	6.43130224466243	6.27513461993197	6.56890811952293	6.27489466915499	3.92595956227107	8.6686573245612e-38	2.46810543881977e-34
Merged-chr8-36016542-1	chr8	36016442	36016642	+	775.666687	f0_balb.idr	Intergenic	Intergenic	-78286.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	3.26638461878218	3.35847634178115	3.41909968268742	3.55253500516413	2.83665057246239	2.76909910030521	2.81442226997684	3.02937197946539	-2.45249307997855	0.00024900883680192	0.00434736325600292
Merged-chr8-3387484-4	chr8	3387385	3387585	+	884.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033378, intron 7 of 10)	intron (NM_001033378, intron 7 of 10)	-5523.0	NM_133962	102098.0	Mm.170461	NM_133962	ENSMUSG00000004568	Arhgef18	AI467246|D030053O22Rik	rho/rac guanine nucleotide exchange factor (GEF) 18	protein-coding	4.08831274623084	4.15398968498107	4.30420047743963	3.90827885089028	4.14153569318049	4.16511001053108	4.11673488415455	3.76988868423598	-0.129784054459474	0.764292066439496	0.907569734027842
Merged-chr12-4539679-4	chr12	4539595	4539795	+	922.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	15582.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	4.82656890120776	4.97849474464476	4.59234881067276	4.78526805944008	4.842796061944	4.43581771193131	4.6932389999764	5.02204002782134	-0.0677148249950993	0.848649214661971	0.942797871898744
Merged-chr12-28732397-3	chr12	28732289	28732489	+	940.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161410, intron 3 of 11)	intron (NM_001161410, intron 3 of 11)	18005.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	3.5944593264441	3.65806872807627	3.65086178665317	3.8237304061587	4.06743451160594	3.71121119653203	3.58161020851939	3.75381611182335	0.320140735211675	0.50496593146908	0.771142888565494
Merged-chr12-3434853-4	chr12	3434752	3434952	+	959.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270988, intron 1 of 11)	intron (NM_001270988, intron 1 of 11)	7995.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	5.01061753374112	5.89025498595369	5.1247709890728	4.2533934101653	5.92356318062386	5.9413724130864	5.67046846577599	5.15689221362836	0.832048646264882	0.183185717742553	0.480044775907415
Merged-chr13-105316162-4	chr13	105316037	105316237	+	731.174988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21652.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	4.20080420461265	4.06266424826322	4.06812197264824	4.52664182962532	3.90016593427934	3.98711123305218	3.67745284198619	3.96850396443469	-0.956768120856032	0.0335687166272359	0.180395327707135
Merged-chr2-157070483-4	chr2	157070279	157070479	+	919.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	8886.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	3.30157628087766	3.08065827732184	3.30204285949125	3.31916834305962	2.87348583130774	3.24167040479603	3.17842660805104	3.12913104203121	-0.590940545195739	0.3041293787544	0.616776598391914
Merged-chr11-32561789-6	chr11	32561697	32561897	+	965.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	28531.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	4.43166803318383	4.04507432220241	4.25833950281933	4.86338555634683	4.24766497452547	4.28797096376743	4.28508764062153	4.3882441334078	-0.367502528258228	0.394777943147919	0.693739025190118
Merged-chr13-45088006-4	chr13	45087917	45088117	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-85921.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	4.58211464770057	5.09421353726177	5.19922528922244	4.76423595320352	5.54770968731106	5.10439261242567	5.20336996669659	5.33998994129903	0.741238300884848	0.0259135818835678	0.152123945970348
Merged-chr4-33310258-4	chr4	33310165	33310365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011884)	promoter-TSS (NM_011884)	-46.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	7.79513058868214	7.9001860754446	7.68158317646306	7.84662046548173	8.01167008508312	7.89304038416292	8.02510517118891	8.07080737449893	0.246950239685238	0.124565490220106	0.391884975827738
Merged-chr7-132656277-4	chr7	132656174	132656374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	45631.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	5.26570474883446	5.20363547620592	4.96640449142298	5.08381200098563	5.15995205302916	5.52403102273464	5.21061287574242	5.03606893662953	0.200182149265903	0.514148294923182	0.776908938806569
Merged-chr17-80553833-4	chr17	80553741	80553941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360144, intron 3 of 9)	intron (NM_001360144, intron 3 of 9)	9993.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	6.03079104575889	6.2211821693391	6.16099492126704	6.37591353086954	6.14392103742427	6.37715405362953	6.54203447517276	6.23586208278901	0.165193850583306	0.486477957222292	0.760181214838873
Merged-chr2-170202168-4	chr2	170202075	170202275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59500.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	6.43261872899561	6.17147081236826	5.99241201010934	6.24441897713174	6.11690768910728	5.56701891830794	5.98351443469092	5.77260887549942	-0.515452214707779	0.0493895305682591	0.229966468000138
Merged-chr12-112581289-4	chr12	112581177	112581377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7507.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	7.12548148325575	7.16386236371397	7.40912537905539	7.31245173543348	7.18466197616112	7.11461763690495	7.14805675094556	7.03681083809301	-0.184113960159801	0.319572514757176	0.631506164017241
Merged-chr16-72980029-4	chr16	72979923	72980123	+	909.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019413, intron 15 of 28)	intron (NM_019413, intron 15 of 28)	316874.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	3.79792191445744	3.95046858176284	4.11461872399983	4.29008942243997	4.58689593389464	4.08896552470281	4.22848507273545	3.910280352595	0.441367772804819	0.337483532704341	0.64720714447576
Merged-chr14-36867151-4	chr14	36867056	36867256	+	894.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52379.0	NM_001347503	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	4.69222796908266	4.85673386435796	4.65325952490241	4.88991927130501	4.55594032589336	5.01110097163105	4.67109704599969	4.52335643795831	-0.189412193713226	0.59188303502716	0.821848634889742
Merged-chr6-34629209-4	chr6	34629109	34629309	+	920.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 1 of 13)	intron (NM_001347100, intron 1 of 13)	30705.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	4.21195629006396	4.37069818949254	4.25815662206382	4.43762265241887	4.52830720182254	3.96113319500581	4.32503548286518	4.1139209536591	-0.159703543344733	0.699890147318847	0.878956222802644
Merged-chr1-153749335-4	chr1	153749230	153749430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011882)	promoter-TSS (NM_011882)	-96.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	7.37758983660057	7.60401301686819	7.45641287367723	7.55150892533566	7.43714372177301	7.18748205381566	7.41951465681761	7.15593379241545	-0.256668948124368	0.161290656531456	0.450029320380696
Merged-chr19-6992658-4	chr19	6992562	6992762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357001)	promoter-TSS (NM_001357001)	-80.0	NM_001357000	57431.0	Mm.10721	NM_020566	ENSMUSG00000024963	Dnajc4	Hspf2|Mcg18	DnaJ heat shock protein family (Hsp40) member C4	protein-coding	7.95535818128508	8.27791462398649	7.58813634987374	7.82299735372058	7.71831090639291	7.79285444768886	7.64711354784281	7.67939048587941	-0.294234246583414	0.134380631812276	0.408014289628717
Merged-chr1-13980470-4	chr1	13980371	13980571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-193542.0	NR_004447	433273.0	Mm.304088	NR_004447	ENSMUSG00000097711	Gm5523	EG433273	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	6.22317845682414	5.42182649663984	5.98402588431004	6.16024938580157	6.27084081994134	5.86603407914229	5.99654740228868	6.18286507894621	0.166745931718603	0.557737180601538	0.802816324871987
Merged-chr2-122153043-4	chr2	122152942	122153142	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009735)	TTS (NM_009735)	5355.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	5.56029288971267	5.11633736613604	5.5073155615495	5.58180761337927	5.62967922386749	5.68143202596213	5.53324609221137	5.50345466339244	0.220699960672178	0.433095406615873	0.722780191496359
Merged-chr4-55472813-4	chr4	55472704	55472904	+	923.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-53962.0	NR_040674	100415914.0	Mm.261765	NR_040674	ENSMUSG00000087070	Gm12505	-	predicted gene 12505	ncRNA	4.18541681325152	4.55704759997809	4.48722717777396	4.62332395868009	5.04902619632513	4.97582799817744	5.00386205732768	4.43873090732106	0.856209730155831	0.0242989462324991	0.145697472317669
Merged-chr18-82475126-4	chr18	82475078	82475278	+	945.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010777)	promoter-TSS (NM_010777)	55.0	NM_010777	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	4.54636455442242	4.15646468228724	4.23519380988512	4.70927852915763	4.15951957652454	4.50834060520695	4.86649998103358	4.6208006753	0.254830770643252	0.546528214998048	0.796426402355639
Merged-chr12-82470241-4	chr12	82470162	82470362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146663.0	NM_001310478	50779.0	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding	5.27071537949985	5.08478017079329	5.00123044269939	5.26316370750426	5.19062981282744	5.66566452389397	5.01408474454666	5.54050781986165	0.371291490243656	0.243463675227485	0.554561776025382
Merged-chr11-75168932-8	chr11	75168809	75169009	+	986.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098203)	promoter-TSS (NM_001098203)	-757.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	4.4434139700537	5.0143701224076	5.20462707230374	4.57966742035724	4.98862217046879	4.90043208062153	4.96156502257215	5.41109323245971	0.47594880855986	0.20102032694657	0.503233069029996
Merged-chr4-41507096-4	chr4	41506988	41507188	+	974.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253788, intron 4 of 5)	CpG	676.0	NM_028624	73721.0	Mm.45614	NM_028624	ENSMUSG00000028441	1110017D15Rik	Cbe1|Smrp1	RIKEN cDNA 1110017D15 gene	protein-coding	5.82228269085229	5.56785615144496	5.4727526164805	5.61207231616507	5.25038039000005	5.2130035078873	5.91729315157971	5.65618781981059	-0.14483279084456	0.634266012342179	0.845095562869841
Merged-chr13-66933743-3	chr13	66933663	66933863	+	967.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025547)	promoter-TSS (NM_025547)	-691.0	NM_025547	66410.0	Mm.347939	NM_025547	ENSMUSG00000021519	Mterf3	2410017I18Rik|Mterfd1	mitochondrial transcription termination factor 3	protein-coding	4.14440650626169	3.93588022907337	4.52366549255161	4.13631426326114	4.25830003729707	4.16909641789192	4.07791993437692	4.72127215864773	0.32546822045292	0.454763662737986	0.73852664271109
Merged-chr14-74983240-3	chr14	74983134	74983334	+	936.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046078, intron 2 of 2)	intron (NR_046078, intron 2 of 2)	8148.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	4.11964105096939	4.40322827584438	4.21032200456542	4.39305832525187	4.05180638674287	4.09480353906489	3.84843473909634	3.91655581430095	-0.813070627283616	0.0524444889460672	0.238603149804546
Merged-chr2-73054253-4	chr2	73054153	73054353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73807.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	7.82980800389278	7.64987599602202	8.08853096689228	7.89642380818589	7.81471524350788	7.56182706699154	7.98733307633583	7.75623849475432	-0.10831524018429	0.558120858592052	0.803005868101121
Merged-chr4-126062835-2	chr4	126062735	126062935	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172701, intron 1 of 9)	T-rich|Low_complexity|Low_complexity	4270.0	NM_172701	230751.0	Mm.38907	NM_172701	ENSMUSG00000042616	Oscp1	1810007P19Rik|5730415O04|6030436A01Rik	organic solute carrier partner 1	protein-coding	2.69733003558998	2.81928512115548	2.77236378206195	2.67044363466203	3.32171170551937	3.1488243417731	3.13762701757933	3.25403613110865	2.09413079595883	0.000407467918574215	0.00654255785612317
Merged-chr14-79482421-4	chr14	79482314	79482514	+	980.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	intron (NM_007920, intron 1 of 8)	-1146.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	4.85633596522913	4.81884655818805	4.62913765962815	5.01334568984417	4.82076161360506	4.37529454736414	4.56614802632693	5.01652038728025	-0.255998966228321	0.48457903137176	0.758679604821733
Merged-chr3-152800239-3	chr3	152800144	152800344	+	969.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86144.0	NM_025662	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	4.2340551634588	4.4565560033392	4.27772201878426	4.62741877606813	3.96716572996037	3.61139210330041	4.17164288323156	3.99273261837057	-1.20032737914227	0.00731692032347408	0.0628619277857044
Merged-chr16-4896819-4	chr16	4896726	4896926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	10726.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	6.70947261208263	7.13929237820832	6.6809565258807	6.14497555179756	6.99607336064402	7.05138958102072	6.26538315652696	6.33317777323377	0.00606555488774451	0.984014341390739	0.994232698662932
Merged-chr11-103345004-6	chr11	103344828	103345028	+	915.297241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133715)	promoter-TSS (NM_133715)	175.0	NR_045346	653030.0	Mm.440684	NR_045346	ENSMUSG00000085887	Arhgap27os3	F830206d12rik|Gm11648	Rho GTPase activating protein 27, opposite strand 3	ncRNA	2.73433740059147	2.64301859373991	2.85273458736234	2.47523118364562	2.84989507395063	2.4854516909828	2.52778108567691	2.8510945512397	0.0785730047090044	0.910169078722172	0.966671146059764
Merged-chr10-62602860-4	chr10	62602776	62602976	+	940.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019553)	promoter-TSS (NM_019553)	-578.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	3.8260142114323	3.94948814935713	3.71221839752491	3.96741192238892	4.10884295635408	4.05368346475731	4.22399359188897	4.07251673315157	0.63740094976321	0.133277003499768	0.406571115249216
Merged-chr19-55681460-4	chr19	55681361	55681561	+	841.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	MER58B|DNA|hAT-Charlie	20743.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	4.05214944081909	3.70212118506011	4.19268867549487	3.77854634053757	4.53363158749966	4.40653344595304	4.08309516768078	4.05031389103347	0.918629722958575	0.0372686259186478	0.192576662378471
Merged-chr2-5797946-1	chr2	5797846	5798046	+	879.5	f0_balb.idr	intron (NM_133837, intron 11 of 12)	intron (NM_133837, intron 11 of 12)	-47088.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	3.93843568556772	3.85551095412563	4.26315959582547	4.16932046499945	3.25714823124051	3.55666826089032	3.42703415050162	3.79006260809184	-1.73057052465283	0.000863844808140109	0.0119742180328344
Merged-chr16-32402994-4	chr16	32402911	32403111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160402, intron 1 of 4)	intron (NM_001160402, intron 1 of 4)	2505.0	NM_001160402	277203.0	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	6.08919777557388	6.16925547659825	5.39506186897365	5.82952139975952	6.3213659924247	6.41981876298034	6.13850996796024	6.18498809103251	0.567965852934125	0.0342788724662093	0.182978205435912
Merged-chr12-99796111-4	chr12	99796029	99796229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030172, intron 5 of 5)	intron (NM_030172, intron 5 of 5)	87313.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	7.1331075688762	7.19027483683332	6.8364009248128	7.20892595991658	7.22391974844237	7.33380458457384	7.07531656871143	7.04592802307164	0.0904018268484221	0.645723785088663	0.850934142345746
Merged-chr3-133583039-4	chr3	133582843	133583043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38553.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	6.50412698354384	6.28766382037213	6.25202009631451	6.5111208259179	6.58450666114375	6.64773384126025	6.53561277227903	6.38042603388905	0.203875929915933	0.349221097948624	0.65679883028286
Merged-chr9-111604217-3	chr9	111604123	111604323	+	812.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016853, intron 4 of 10)	intron (NM_016853, intron 4 of 10)	86125.0	NM_016853	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	2.96386558388687	2.94996010042945	2.88094398338508	2.5617702032728	3.92908173206793	4.05813904332351	3.86667121761938	3.65726565401456	4.44805479624078	2.34775652835572e-12	2.35699523176067e-10
Merged-chr1-135742671-2	chr1	135742571	135742771	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153810, intron 2 of 3)	intron (NR_153810, intron 2 of 3)	13504.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	1.89853021524269	2.06082473584566	1.89864321622658	2.05585463613224	2.08987043109455	2.29542283149393	2.24754281344252	2.31636012462582	1.67993329378415	0.0478880874546383	0.225698948412727
Merged-chr13-104041208-4	chr13	104041114	104041314	+	935.6166380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029447, intron 9 of 12)	intron (NM_029447, intron 9 of 12)	68400.0	NM_029447	75805.0	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	4.86666790044683	4.88946567094645	4.58852509778054	5.25024509165914	5.12329736090839	4.24405613302062	4.97864222149854	4.82792407433483	-0.181608307158163	0.652809518340121	0.854764223296605
Merged-chr10-130093015-1	chr10	130092915	130093115	+	615.0	f0_balb.idr	Intergenic	Intergenic	18603.0	NM_146671	258666.0	Mm.377628	NM_146671	ENSMUSG00000058251	Olfr822	MOR113-2	olfactory receptor 822	protein-coding	2.82682683135229	2.88213593390792	2.82717323423284	2.91333567579556	2.77968859266532	2.73498533654699	2.81715787953513	2.55912099775538	-0.652692217781863	0.308278787355586	0.620682143104779
Merged-chr1-157017685-4	chr1	157017577	157017777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78051.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	5.41156503200782	5.7649200884537	5.19210503202084	5.92810247965919	5.29273131552964	5.22719064157358	5.26514772692866	5.34959090593881	-0.601364312069033	0.054227299702758	0.243216443953536
Merged-chr3-9003259-1	chr3	9003159	9003359	+	562.0	f0_balb.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	945.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	3.81106753892425	3.7601358957408	3.96159371140694	3.7134307251874	3.97998814621494	3.87768562272843	3.74277620442381	4.25192928084102	0.479277965797008	0.284581279399008	0.596386649562719
Merged-chr4-43264559-3	chr4	43264479	43264679	+	766.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310758, exon 39 of 39)	3' UTR (NM_001310758, exon 39 of 39)	-2580.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	3.13519513103753	3.17061736929415	3.07646140995245	3.27363124352403	2.9779627687274	2.98766189251837	2.94055101717228	3.29615587599806	-0.463328926740515	0.425431863680619	0.716959775794977
Merged-chr5-125381689-2	chr5	125381589	125381789	+	847.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8328.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	3.58147924578806	4.24956189193468	3.34472576532082	2.64274472712588	3.65552617834045	3.86161901005232	3.12596486756055	3.3429379299733	-0.25943272538422	0.805788634440841	0.92529327930282
Merged-chr9-109832779-6	chr9	109832645	109832845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018757)	promoter-TSS (NM_018757)	-49.0	NM_018757	54369.0	Mm.12951	NM_018757	ENSMUSG00000032478	Nme6	nm23-M6	NME/NM23 nucleoside diphosphate kinase 6	protein-coding	5.50905394067828	5.2799291547678	5.29543481995965	5.50963853586834	5.65720142949116	6.06785778943754	5.68867729477358	5.66496232722158	0.613696361061285	0.0269271457112524	0.155985763516539
Merged-chr17-74601375-4	chr17	74601294	74601494	+	909.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007566, intron 19 of 72)	intron (NM_007566, intron 19 of 72)	73099.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	4.14314411545215	4.03241136902866	4.33718565245196	4.79619969772825	4.49111662771112	4.27022650075135	4.56008976640735	4.6153049141341	0.239696516128732	0.581685843225443	0.816420227529328
Merged-chr10-62449890-8	chr10	62449786	62449986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181423)	promoter-TSS (NM_181423)	-148.0	NM_181423	338359.0	Mm.235898	NM_181423	ENSMUSG00000020079	Supv3l1	6330443E10Rik	suppressor of var1, 3-like 1 (S. cerevisiae)	protein-coding	4.62972835243909	4.88703447667497	4.87974844853723	4.94480490234375	5.50233152862347	5.05541322343491	5.09512108908471	5.08519130705688	0.693257828858487	0.0344406707258833	0.183508936792524
Merged-chr17-40875758-2	chr17	40875652	40875852	+	699.25	f0_c57.idr|f1_c57bl6.idr	3' UTR (NM_027834, exon 2 of 2)	3' UTR (NM_027834, exon 2 of 2)	4806.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	3.39055760951753	3.6046407112339	3.64374201717629	3.04171200450018	4.30448944153258	3.98246013632725	3.57060724671661	4.27004803544246	1.89261720783784	0.000413241174618225	0.00660693925609853
Merged-chr2-62653267-2	chr2	62653178	62653378	+	553.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-7023.0	NM_001164477	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	3.62758436452096	3.34835388267219	3.40744644337601	3.59748552142076	3.66611808873035	3.45893439335455	3.61312967621064	3.67560771413929	0.330144322267041	0.502143268583179	0.769457185302407
Merged-chr10-78457942-4	chr10	78457861	78458061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172134, intron 1 of 10)	intron (NM_172134, intron 1 of 10)	6987.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	6.82992990860871	6.5488549526399	6.63587736179653	6.87531384382376	7.02589880780063	6.96545496425805	6.97673358853324	7.11103950816836	0.395276066024396	0.0484828170265268	0.227291542971449
Merged-chr10-118104149-3	chr10	118104041	118104241	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-37646.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	3.116958381653	3.11755946252075	3.39050198424539	3.0471237272403	3.23789198749723	3.09832127704747	3.04488690796004	3.23196024131882	-0.029949661406788	0.957522685712206	0.984850737934993
Merged-chr17-87327150-4	chr17	87327052	87327252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 8 of 19)	intron (NM_028639, intron 8 of 19)	44266.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	7.14259712999587	7.16414625149887	7.03922383394595	7.24696682945497	7.07705327544012	6.68240502806771	6.89000710140728	6.79463735439353	-0.381660114812568	0.0551277031995435	0.245429996624988
Merged-chr8-3467666-4	chr8	3467576	3467776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026951)	promoter-TSS (NM_026951)	-28.0	NM_026951	69129.0	Mm.45279	NM_026951	ENSMUSG00000069633	Pex11g	1810022F11Rik|1810049N02Rik|Pex11c|Pex11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding	7.75542113794918	8.0541798441606	7.60178003201688	8.25787100401491	8.08989449679584	7.81564288563131	7.91993901684456	7.7351644620581	-0.0690106502170513	0.736659259099462	0.896043754662457
Merged-chr4-141765215-3	chr4	141765127	141765327	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172338, intron 13 of 14)	intron (NM_172338, intron 13 of 14)	18552.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	5.63039193347416	5.36422893151716	4.83828612832338	5.60136063721086	3.61598650785618	3.82523315270715	3.6749342435974	4.03773008520342	-4.27099237270589	5.0320744057191e-15	8.19629345823065e-13
Merged-chr10-96616867-4	chr10	96616760	96616960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007569)	promoter-TSS (NM_007569)	-141.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	9.1471473246985	9.27397180824478	9.01924817130737	8.92239320861248	9.31699327764651	9.4902700936545	9.34829404936652	9.23025961748976	0.313666720588433	0.0402751487887582	0.202711413918471
Merged-chr4-40269840-4	chr4	40269742	40269942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134097)	promoter-TSS (NM_134097)	-1.0	NM_134097	106021.0	Mm.251548	NM_134097	ENSMUSG00000036822	Topors	AW105885|LUN|TP53BPL|p53BP3/LUN	topoisomerase I binding, arginine/serine-rich	protein-coding	8.1197125339882	8.44222617488981	7.99152731520675	8.25678330014188	8.37705263886515	8.3741472156383	8.59441051159099	8.4488280654216	0.295367553603725	0.0819139141793624	0.310614804612052
Merged-chr9-64252904-3	chr9	64252879	64253079	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008927, intron 1 of 10)	intron (NM_008927, intron 1 of 10)	626.0	NM_008927	26395.0	Mm.248907	NM_008927	ENSMUSG00000004936	Map2k1	MAPKK1|MEKK1|Mek1|Prkmk1	mitogen-activated protein kinase kinase 1	protein-coding	4.23734157989895	4.01671034916676	3.87983111756834	3.52691816789251	4.51408973794036	4.41250292557408	4.02784993571183	4.74440704465697	1.30740388351621	0.00440291100924022	0.043214947976656
Merged-chr2-126030350-3	chr2	126030270	126030470	+	714.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029455, intron 11 of 16)	intron (NM_029455, intron 11 of 16)	-4288.0	NM_008008	14178.0	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	3.84436812682099	3.73097947744456	3.63829501628651	3.46381539432165	3.60993038735082	3.36777329714001	4.08301669708612	3.9780103494796	0.355804592813693	0.488696034666132	0.761377570765248
Merged-chr2-27699703-4	chr2	27699559	27699759	+	945.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-9633.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.48065472017269	4.58339011341039	5.27140235067433	5.34845996348833	4.99793345557268	4.74915560998318	5.42925291780547	4.70123968503488	-0.394849223204292	0.308957859770365	0.621328798683246
Merged-chr14-61549790-4	chr14	61549767	61549967	+	847.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310603, intron 1 of 3)	intron (NM_001310603, intron 1 of 3)	7019.0	NM_025697	66674.0	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	3.4560828943163	3.55240154387295	3.84324633113906	3.3108266689784	3.87191399970559	3.81138537930798	3.9605700010109	3.8877283104898	1.04610066793199	0.0287633420075632	0.162953390919657
Merged-chr3-103857544-3	chr3	103857446	103857646	+	975.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-2249.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	4.03068318452627	3.86983791893966	4.22339907077041	3.56579296867112	5.86126794301682	5.42791936305218	5.92378802113645	5.54962709888725	3.83673330877324	1.26090291106002e-25	8.46696304776801e-23
Merged-chr13-91681262-4	chr13	91681160	91681360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 9 of 15)	intron (NM_001360776, intron 9 of 15)	-60261.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	6.17257446198757	6.10339268729649	6.27658941879128	6.35825515032636	6.74513462102416	6.67024862128242	6.94824014682646	6.55428575006027	0.726508682983657	0.00100705554216102	0.0135247559312224
Merged-chr13-58128796-7	chr13	58128718	58128918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029872)	promoter-TSS (NM_029872)	-262.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	6.74631869207186	6.6719785897219	6.95153990930682	6.51048788887218	6.79562253088075	7.32422180180253	6.52300739873776	7.13274914359201	0.357230315661752	0.144620304233097	0.423792862701014
Merged-chr6-97214098-3	chr6	97213977	97214177	+	724.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022992, intron 1 of 2)	B1F|SINE|Alu	3285.0	NM_022992	65106.0	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	3.74134775561739	3.46118772676239	3.48294994896385	3.64078129103636	3.70586150294578	3.59762950194326	3.41221201884632	3.53720310910406	-0.0506599766138246	0.917951207412902	0.969760089182615
Merged-chr18-38365088-4	chr18	38364989	38365189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-26096.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	6.86059524877083	6.50187122758319	6.22530958922343	6.42675011096402	6.46587155879862	6.31857758725683	6.88750142752911	6.35797291601083	0.0131589695325937	0.958379837918777	0.985161436127615
Merged-chr17-62527646-4	chr17	62527504	62527704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	353713.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	5.3584468248062	6.0807232517459	5.39072485783615	5.31237178591938	5.71337403163364	5.73943996726837	5.30092985098467	5.75994954369872	0.112898148879239	0.725896443838748	0.890939054959008
Merged-chr16-18858747-4	chr16	18858648	18858848	+	961.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17889.0	NM_010922	18100.0	Mm.20918	NM_010922	ENSMUSG00000022706	Mrpl40	Nlvcf	mitochondrial ribosomal protein L40	protein-coding	5.10652713423132	4.87404904780933	4.83575343563831	4.84072732155278	4.93271257156281	5.24725366940436	4.84985277649927	4.71385575586231	0.0700236603825105	0.833187381287339	0.936237948428556
Merged-chr4-128720244-4	chr4	128720167	128720367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 7 of 14)	intron (NM_018774, intron 7 of 14)	-7304.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	7.11402024177151	7.33286650723035	7.4671366362923	7.3346598845471	6.94890187732705	7.25613031496292	7.21478916362329	7.17995039592885	-0.233574019060816	0.222180435465578	0.530192477403928
Merged-chr1-165192409-4	chr1	165192318	165192518	+	973.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151711, intron 1 of 6)	(T)n|Simple_repeat|Simple_repeat	2015.0	NM_145512	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	5.22822731637302	5.65875179291093	5.12902273648967	4.72849845293654	5.51916520786583	5.63589857056803	5.38119465465496	5.09039648928646	0.363922205293116	0.299773182809896	0.61202258430546
Merged-chr16-55966366-4	chr16	55966295	55966495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024218, exon 1 of 6)	5' UTR (NM_024218, exon 1 of 6)	120.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	6.76585350074895	6.77524639927522	6.43319183839925	6.55316518131606	6.89751537091488	6.7311974544946	6.52111503954582	6.62991432785553	0.1055155033008	0.627314143191952	0.841125213379356
Merged-chr9-20997302-4	chr9	20997219	20997419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-5418.0	NM_023167	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	6.38156566314354	6.59832971672759	6.63081888134236	6.81102753719058	6.36249780072763	6.25303627468455	6.33172837718713	6.71297914335011	-0.292084325568738	0.207559220072423	0.511560170551766
Merged-chr6-58907131-3	chr6	58907019	58907219	+	884.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021432)	promoter-TSS (NM_021432)	7.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	3.79162223264512	3.5055006056291	3.84030828574716	3.97708120453912	3.38016409032507	3.6368266196215	3.91353772007886	3.63390870323458	-0.446538486077247	0.376049015391263	0.678894992429926
Merged-chr1-52815845-4	chr1	52815751	52815951	+	746.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008384, intron 1 of 5)	intron (NM_008384, intron 1 of 5)	1837.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	4.0712968125193	4.39637134983326	4.76452372279343	3.86698568801242	4.44192097048555	3.91235101670582	4.05468704801399	4.16768766966563	-0.360168072499499	0.451476138276424	0.736071851703571
Merged-chr6-100671220-4	chr6	100671117	100671317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181590)	promoter-TSS (NM_181590)	-60.0	NM_181590	72171.0	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	7.78148798329822	7.78273690409438	7.66129870382924	7.63405096603487	7.85048112034487	7.92884732717792	7.84124176310714	7.51205993711514	0.105037496211396	0.550322149967958	0.798579499168602
Merged-chr5-112297499-4	chr5	112297461	112297661	+	897.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	20870.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	3.77051138057035	4.04691874114559	3.99280951228819	4.74516825469849	3.9184876823593	3.62626964784656	4.11922971811764	4.45566240362764	-0.355180183935197	0.510913830362527	0.775074357160952
Merged-chr16-44811749-4	chr16	44811651	44811851	+	924.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8977.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	4.90592124345452	4.68902569529781	4.83537088759922	5.16596108258425	4.73717568999154	4.68177862943437	4.81244030390548	5.00331809371245	-0.235127553068832	0.495535110604453	0.765843617285791
Merged-chr17-29022538-3	chr17	29022444	29022644	+	882.4722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10116.0	NM_013663	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	3.70216419420941	3.94615759340455	4.12681967507801	3.55417667374663	3.66801370895439	4.07894441642201	3.63180865098591	3.75517718443129	-0.146591957226107	0.765569261117751	0.908309649125696
Merged-chr4-128883571-4	chr4	128883475	128883675	+	996.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178110)	promoter-TSS (NM_178110)	-565.0	NM_178110	67525.0	Mm.30653	NM_178110	ENSMUSG00000041000	Trim62	6330414G21Rik|AI450348|Dear1	tripartite motif-containing 62	protein-coding	5.73957709150352	5.87116624714443	5.6196730612166	5.33852545079842	5.69241023894668	5.11508662980382	5.40107347716283	5.45352556375174	-0.345134537698658	0.260017613873466	0.571792935550525
Merged-chr10-128370803-4	chr10	128370694	128370894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081040)	promoter-TSS (NM_001081040)	-757.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	7.09246705722421	6.57459167333291	6.77428588898259	7.13565806587503	6.80633036944936	6.78080226117398	6.9525529302661	6.85384082809666	-0.105257730664774	0.632011376022237	0.84364113460172
Merged-chr10-24712053-4	chr10	24711945	24712145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008813, exon 1 of 25)	5' UTR (NM_008813, exon 1 of 25)	114.0	NM_001308327	18605.0	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	6.67805733556063	6.47199172623088	6.84537779952901	6.90185331735384	6.34050886137983	6.73120376314412	6.41966655790844	6.51700176847303	-0.346945605801915	0.123457455621872	0.389623935164903
Merged-chr4-136450004-4	chr4	136449910	136450110	+	980.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-19751.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	5.87200800317267	6.5489142069493	6.60760840564966	6.34359827755156	5.87153871788542	5.29148202204134	5.63349120758547	6.04971333366698	-0.976701457486328	0.00109112683289524	0.0144198508798088
Merged-chr17-17585996-1	chr17	17585896	17586096	+	607.0	f0_balb.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	38493.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	3.44439721794787	3.44009844014436	3.33812205230763	3.32999395821912	3.14549859327337	3.45182513154478	3.01665089587992	3.22007743702445	-0.64256846559998	0.242535583238569	0.553291388378231
Merged-chr18-65699327-4	chr18	65699224	65699424	+	986.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177028, intron 1 of 14)	intron (NM_177028, intron 1 of 14)	1056.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	5.31532971272048	5.36097035281541	5.46568674247013	5.76876267312156	5.59412717497666	5.21519777092142	5.32112076514314	5.8260452531798	0.0147984320164608	0.96177547612868	0.986287517870095
Merged-chr6-39508228-3	chr6	39508167	39508367	+	896.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172477, exon 3 of 19)	exon (NM_172477, exon 3 of 19)	49567.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	4.39089028710498	4.28420969337506	4.63096479587487	5.18457201173407	4.10311122916906	4.27965872051193	4.08121442602245	4.43186805553237	-1.07171594986678	0.015849312231111	0.109037396369449
Merged-chr14-47298167-4	chr14	47298047	47298247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360542)	promoter-TSS (NM_001360542)	-127.0	NM_178684	218975.0	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	6.59426870606255	6.6204226515405	6.19105757896227	6.38307698532975	6.36419521128539	6.21568531104413	6.56173186922496	6.30515818441635	-0.128741307149313	0.576201697794193	0.813446739194192
Merged-chr18-9494508-4	chr18	9494429	9494629	+	848.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44375.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	4.2458436714381	4.11089379129276	4.24649645856463	4.53033417881834	4.15716135579183	4.41431032580404	3.83472702470229	3.95607644493023	-0.503199747830344	0.250477281182691	0.561605317120354
Merged-chr19-4397266-4	chr19	4397172	4397372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001984)	promoter-TSS (NM_001001984)	-195.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	8.50214393038666	8.61027971824176	8.56542654854685	8.19533564840106	8.49139308742562	8.7103797822561	8.44951179767474	8.36955611793765	0.0485910136660778	0.778573685340695	0.913781420202775
Merged-chr11-23633131-1	chr11	23633031	23633231	+	1000.0	f0_balb.idr	intron (NM_027860, intron 1 of 21)	intron (NM_027860, intron 1 of 21)	500.0	NM_001347242	71675.0	Mm.48031	NM_027860	ENSMUSG00000042208	0610010F05Rik	Kiaa1841|mKIAA1841	RIKEN cDNA 0610010F05 gene	protein-coding	3.8523544415524	4.13918888549044	4.32466843631677	4.07941484514201	4.30685809441784	3.97421503476472	3.99673008264178	4.24055752507096	0.0976800966467357	0.81831307544074	0.930312847480992
Merged-chr11-23498073-4	chr11	23497962	23498162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290655)	promoter-TSS (NM_001290655)	-23.0	NM_172391	268390.0	Mm.13148	NM_172391	ENSMUSG00000020288	Ahsa2	-	AHA1, activator of heat shock protein ATPase 2	protein-coding	8.66386079363587	9.04160310027651	8.85263874889573	8.6717869588352	8.82596463309322	8.92554100908707	8.86577762307191	8.64622295115349	0.00543227125753157	0.973439081631885	0.990485651958264
Merged-chr11-114853291-4	chr11	114853179	114853379	+	982.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147217, intron 1 of 3)	intron (NM_147217, intron 1 of 3)	1249.0	NM_147217	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	5.13887238605085	4.93268651093726	4.98237625296779	4.86343584654967	4.952667793494	4.72594613424899	4.81726420880068	5.04448168841748	-0.15556789528484	0.630944155879244	0.843124386449892
Merged-chr10-62426747-3	chr10	62426656	62426856	+	753.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4299.0	NM_145419	216019.0	Mm.213213	NM_145419	ENSMUSG00000020080	Hkdc1	BC016235	hexokinase domain containing 1	protein-coding	3.5278288444431	3.66356032893134	3.4125848990248	3.57261194551975	3.48095238942737	3.33002894333915	3.56811633113429	3.9055754624785	0.121460542593834	0.811723551697789	0.927202084383877
Merged-chr4-136890056-2	chr4	136889971	136890171	+	603.5	f0_c57.idr|f1_balb.idr	exon (NM_007574, exon 3 of 3)	exon (NM_007574, exon 3 of 3)	2843.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	2.65123502113116	2.98796440614924	2.7272262699956	2.4995439790587	3.15673256902575	3.33298085190473	2.92163800045754	3.10855181767246	1.83329157140876	0.00470127397996511	0.0454046106675626
Merged-chr9-41102321-4	chr9	41102243	41102443	+	937.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	B1F|SINE|Alu	-22837.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	4.45157519246019	4.42110316223863	4.69607275425591	5.07266022102211	4.77436721170722	4.53719931991096	4.70986697306881	4.14998241302133	-0.288640958699688	0.488015799112031	0.761126159857708
Merged-chr14-30717010-4	chr14	30716904	30717104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166532, intron 1 of 20)	intron (NM_001166532, intron 1 of 20)	1389.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	6.81163724052369	6.67930839835441	7.36248854973869	6.85867580318147	6.87031075204413	7.09716543367987	6.7059827962935	6.47101435370185	-0.202050046293848	0.411142969083263	0.706564511740688
Merged-chr1-166339313-4	chr1	166339199	166339399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39868.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	7.29610132803153	7.21619038072251	7.23256296807955	7.70243431803412	7.22332904002115	7.12580492167089	7.49026567058613	7.30274856562485	-0.13549328892996	0.516105653413839	0.778006346996534
Merged-chr1-191557338-4	chr1	191557232	191557432	+	997.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305233, intron 9 of 15)	intron (NM_001305233, intron 9 of 15)	18212.0	NM_029766	76843.0	Mm.189102	NM_029766	ENSMUSG00000037474	Dtl	2810047L02Rik|5730564G15Rik|L2dtl|Ramp	denticleless E3 ubiquitin protein ligase	protein-coding	5.74749773617326	5.76207539982255	5.90855273458065	5.34575105260602	6.28386200006473	5.65592949583804	5.5919243721233	5.41235691779187	0.167133957215909	0.604262117752689	0.828437960431821
Merged-chr7-45814448-4	chr7	45814363	45814563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001112701)	promoter-TSS (NM_001112701)	-147.0	NM_001112701	19158.0	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	8.91523322250738	9.23249236046185	8.8426723663604	8.923949127342	9.17212098096535	9.29033462241904	9.04639685947005	8.85306823266686	0.140041611698149	0.4076954051426	0.703908971101857
Merged-chr7-79822278-2	chr7	79822178	79822378	+	765.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_008486, exon 21 of 21)	exon (NM_008486, exon 21 of 21)	11551.0	NM_008589	17293.0	Mm.31472	NM_008589	ENSMUSG00000030543	Mesp2	bHLHc6	mesoderm posterior 2	protein-coding	3.0207675056296	3.13365804438374	3.14446166782769	2.77739329946023	3.34474784705377	3.19552404314213	3.07320160967109	3.25523377582285	0.828828481200543	0.151632635604916	0.435362001118241
Merged-chr4-95924465-4	chr4	95924357	95924557	+	906.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 15 of 15)	intron (NM_001113412, intron 15 of 15)	42578.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	4.31442607140021	4.04591129194574	4.36503225767308	4.52413912243785	4.80493168849607	4.49817829573376	5.06972309120081	5.34218002530392	1.33000432919177	0.00107292294438521	0.0142241725197235
Merged-chr15-84923236-4	chr15	84923146	84923346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016714)	promoter-TSS (NM_016714)	-182.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	8.21961536160425	8.22360192320052	7.96635089923956	7.70931753315761	8.17461652184401	8.44390823641354	7.94909820657661	8.0296725135061	0.156850952455222	0.431538035287545	0.721710551668303
Merged-chr15-55072106-4	chr15	55072006	55072206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081288)	promoter-TSS (NM_001081288)	46.0	NM_001081288	319944.0	Mm.380957	NM_001081288	ENSMUSG00000037343	Taf2	150kDa|4732460C16Rik|AI425886|CIF150|TAF2B|TAFII-150|TAFII150	TATA-box binding protein associated factor 2	protein-coding	7.00915805925391	6.81739776075631	7.18335093085611	7.13000069919023	6.6894540263683	6.98689670911192	7.04679633157665	7.05392247955445	-0.139648259802825	0.499594661805384	0.768387448003553
Merged-chr10-128923107-4	chr10	128923004	128923204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015740, intron 1 of 3)	CpG	420.0	NM_015740	14533.0	Mm.30118	NM_015740	ENSMUSG00000090247	Bloc1s1	AI839753|BLOS1|Gcn5l1	biogenesis of lysosomal organelles complex-1, subunit 1	protein-coding	7.36763615318082	7.69270860805163	7.26140111338206	7.59217650089401	7.49804800143652	7.53592181942344	7.59944531423753	7.58073997759033	0.0710134764651685	0.699440186013709	0.878778758411201
Merged-chr1-135670561-4	chr1	135670463	135670663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49500.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	5.35083853714098	5.45289661081542	5.23056874672112	5.29244283076552	5.02877045672005	5.12672980789552	5.29611875105083	5.60568664559389	-0.103239422439818	0.735625902584818	0.895620853939579
Merged-chr7-16581855-4	chr7	16581757	16581957	+	906.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172739, intron 1 of 6)	intron (NM_172739, intron 1 of 6)	-31967.0	NR_136928	102634559.0	Mm.421602	NR_136928	ENSMUSG00000100583	Gm29443	-	predicted gene 29443	ncRNA	4.48104199539794	4.62287867155363	4.7110258130387	4.68524500273167	4.20317449626065	4.22091877478174	4.57994647061348	4.52004878274854	-0.559676529803225	0.136049213458788	0.410486305822995
Merged-chr3-116130382-4	chr3	116130278	116130478	+	951.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011693)	promoter-TSS (NM_011693)	-690.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	5.35594347966074	5.29914028962835	5.11347859687078	5.46416864671732	5.17935770226375	4.992411573236	5.15349551057954	4.96845260375667	-0.452263154205152	0.135356981801167	0.409598444334038
Merged-chr2-125660180-3	chr2	125660082	125660282	+	900.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199022, intron 6 of 11)	intron (NM_199022, intron 6 of 11)	-12918.0	NM_025613	58521.0	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	3.56369632167874	3.64510879294151	3.20222744646115	3.63481343810877	3.60378872930773	3.44673459396491	3.54996853155601	3.61372006956579	0.0826918394746647	0.871369510645878	0.951626525074613
Merged-chr1-131690670-4	chr1	131690567	131690767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145509, intron 1 of 5)	intron (NM_145509, intron 1 of 5)	1972.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	6.55988182612867	6.39565749529357	6.74134021525124	6.70807569848682	6.13050479858115	6.68812326927758	6.80087408987327	6.63460387292614	-0.0496474604430689	0.837956709283466	0.938474063450959
Merged-chr19-40754517-2	chr19	40754417	40754617	+	840.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-76762.0	NM_172839	240665.0	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	3.20049720138806	2.93131212532815	3.0365980413755	3.06030885392183	2.77188762379012	3.08591608638766	2.90430949717642	2.84688712685371	-0.686031735464219	0.258017298838328	0.569823559230946
Merged-chr2-130129870-3	chr2	130129756	130129956	+	999.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289747, intron 2 of 13)	ORR1D2|LTR|ERVL-MaLR	6581.0	NM_177726	241636.0	Mm.83437	NM_177726	ENSMUSG00000027403	Tgm6	TGM3L|TGY	transglutaminase 6	protein-coding	3.65195294251808	3.64357372442122	3.50686509877746	3.53600783726931	4.52544573219859	4.35226989203705	4.94316971564638	4.91393180334951	2.85441700172569	3.82628348986712e-10	2.6570832441488e-08
Merged-chr8-19561428-1	chr8	19561328	19561528	+	648.75	f0_balb.idr	Intergenic	Intergenic	66331.0	NM_139220	246080.0	Mm.207067	NM_139220	ENSMUSG00000037790	Defb7	BD-7|Defb15	defensin beta 7	protein-coding	3.21379769025481	3.36013321509668	3.42062515792158	3.19459788456353	2.95852889987765	3.14429092558316	2.95904575674121	2.82490259902079	-1.34004075692486	0.0259103816090712	0.152117704763451
Merged-chr2-163664081-4	chr2	163663962	163664162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 2 of 4)	L1MB2|LINE|L1	5604.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	5.08714358491769	5.1107029399399	5.01901586770127	5.16688741766963	5.25794049645354	4.92391391950827	5.21966106313632	5.3278513636781	0.174144979273721	0.564453832462532	0.806796423519025
Merged-chr13-113485704-4	chr13	113485626	113485826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 2 of 6)	intron (NR_045501, intron 2 of 6)	17118.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	8.36531570707575	8.54872426732154	8.64072411569293	8.47111939874932	8.31133459839138	8.26195684238392	8.49787385780198	8.08569125649303	-0.267035568905617	0.106363949628435	0.359490957768393
Merged-chr15-83031078-4	chr15	83030957	83031157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271411, intron 1 of 5)	intron (NM_001271411, intron 1 of 5)	-1107.0	NM_001271413	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	6.06564855311877	5.83886858216758	6.29424018587276	6.25279449452495	6.07916457391679	5.88610197552923	6.09650431996577	5.97614701111753	-0.179074343408299	0.468497288164643	0.747803507343786
Merged-chr3-69978313-2	chr3	69978213	69978413	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-29300.0	NM_001018031	229389.0	Mm.331071	NM_001018031	ENSMUSG00000027788	Otol1	Gm414	otolin 1	protein-coding	2.89072399138348	2.88568306799687	3.10188587341512	3.34868414102131	3.16031179846125	3.39931260876072	3.73447435343539	3.28249820439756	1.18021503418501	0.0625170071229965	0.264780319529202
Merged-chr11-120151360-4	chr11	120151268	120151468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164799)	promoter-TSS (NM_001164799)	-17.0	NM_001164798	72055.0	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	8.41991631882306	8.41731816661149	8.04261068087684	8.01132929121057	8.22189301244432	8.55824715274307	8.25551612546939	8.00973887316981	0.0518933488649199	0.789161811669365	0.91835324030065
Merged-chr16-31290965-4	chr16	31290901	31291101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15724.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	6.03227807347016	6.2647425326759	6.01189426629466	6.09612104373809	6.0298969960599	6.20833582947301	5.69265629708187	5.89462910626353	-0.214781217816902	0.388295587101012	0.688939273910057
Merged-chr9-21546627-4	chr9	21546518	21546718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021531)	promoter-TSS (NM_021531)	-276.0	NM_021531	59035.0	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	9.03966659479988	8.96363878404615	8.76102763507888	8.85011694303382	8.92176883913957	8.99693046384019	9.07326148352461	8.91083547546299	0.0865630582766604	0.555010871376578	0.801191516655959
Merged-chr9-65740779-3	chr9	65740679	65740879	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 2 of 9)	intron (NM_172536, intron 2 of 9)	64231.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	5.22244146717447	5.56209339786398	4.94304378077975	4.83387686697904	3.71104078360871	4.03210923839569	3.81493314176078	4.14373907902083	-3.05634212056709	8.24346535009103e-11	6.40569454316735e-09
Merged-chr3-68778774-1	chr3	68778674	68778874	+	543.0	f0_balb.idr	Intergenic	Intergenic	17279.0	NR_153374	102639225.0	Mm.109095	NR_153374	ENSMUSG00000102936	Gm35584	-	predicted gene, 35584	ncRNA	2.56418268286128	2.52911716089852	2.73650013923065	2.71414833675375	2.26292372309223	2.39308926842514	2.28693827591432	2.29141631654247	-2.13651662710594	0.00741835459872892	0.0634963766339904
Merged-chr1-16703074-2	chr1	16702977	16703177	+	851.333374	f0_c57.idr|f1_c57bl6.idr	intron (NM_001159711, intron 3 of 4)	intron (NM_001159711, intron 3 of 4)	14621.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	2.83044343640838	2.68084910851028	2.83074528072392	2.37924769828372	3.69596582513215	3.28880602642113	3.21416571817872	3.61982479591343	3.83358197715536	7.32419639649761e-08	3.22604563927168e-06
Merged-chr6-128604675-4	chr6	128604572	128604772	+	978.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18262.0	NM_001159902	17057.0	Mm.16729	NM_010737	ENSMUSG00000030361	Klrb1a	Ly55a|NKR-P1.7|NKR-P1A|NKRP12|Nkrp1-a|Nkrp1a|ly-55A	killer cell lectin-like receptor subfamily B member 1A	protein-coding	5.16260357660559	5.03244235538367	4.74467808057632	5.13074078993588	4.92227407041578	4.83802701742015	4.91256659671754	5.06757777477207	-0.193245598041319	0.548382887204772	0.797382448842745
Merged-chr9-22388725-2	chr9	22388625	22388825	+	903.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028390, intron 1 of 23)	intron (NM_028390, intron 1 of 23)	481.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	3.22941081921029	3.31971311160588	3.2891024116389	3.11482923328844	3.57419431626592	3.21268231268949	3.38636219760449	3.34398671760061	0.580484137057932	0.272619248376523	0.584076256815836
Merged-chr2-164523557-2	chr2	164523403	164523603	+	788.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44B|LTR|ERVK	25978.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	2.99629947867363	3.72785551049237	2.99670712711835	2.94694962498619	2.67903023704006	2.76167022670768	2.6448246554983	2.65067465987494	-2.4982903218084	0.000932977301285692	0.0127243516628117
Merged-chr2-27693907-3	chr2	27693744	27693944	+	943.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-15448.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	3.57673259421005	3.58725463184012	3.78084820759652	3.84201805491179	3.61202272845033	3.30872229558965	3.38885956430683	3.91195889330672	-0.397817774243546	0.445069912204605	0.731198136541277
Merged-chr2-90574374-4	chr2	90574294	90574494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	6253.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	7.89561397408885	8.25207180258073	8.07415037637975	8.0715425921858	7.74379687922163	8.02215808349538	8.00354599686986	7.74416605387378	-0.258404832432934	0.139004464077822	0.414593226669937
Merged-chr19-8252526-2	chr19	8252426	8252626	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-33626.0	NM_001347426	236293.0	Mm.440581	NM_172776	ENSMUSG00000075044	Slc22a29	D630002G06Rik	solute carrier family 22. member 29	protein-coding	3.02865486807098	2.98205694898064	3.20081412100449	2.97091636589092	3.09678545263179	2.78691723641333	2.95644222113645	3.34984587325826	0.0864351156325176	0.88668731560938	0.957459872298027
Merged-chr9-45113171-3	chr9	45113075	45113275	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033547, intron 1 of 2)	intron (NR_033547, intron 1 of 2)	-4701.0	NM_001014761	72821.0	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	5.3447493317292	5.56534424906307	4.88010242924762	5.36020424541843	4.08222244914585	4.22161525632492	4.18995955020751	4.20524461692066	-2.55585138069144	1.15157797578112e-10	8.72001795086429e-09
Merged-chr9-99179882-4	chr9	99179778	99179978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39667.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	6.16599077752963	5.89404089566393	6.37127732509394	6.33761067978474	6.33937569363634	6.12527939946677	6.35557865045036	6.18265601646747	0.0721417580396155	0.763989699772902	0.907492132891533
Merged-chr18-53528891-3	chr18	53528754	53528954	+	885.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033281, intron 2 of 6)	B3|SINE|B2	64308.0	NM_001033281	225518.0	Mm.297645	NM_001033281	ENSMUSG00000069378	Prdm6	Gm92|PRISM	PR domain containing 6	protein-coding	2.58453962240618	2.45192890748298	2.51491877931533	2.66127261502868	2.60199837281114	2.75701568576399	2.82050131821701	2.83052222958779	0.933141456699155	0.160607224160805	0.448824160022381
Merged-chr4-132483172-4	chr4	132483075	132483275	+	915.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19254.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	4.59697375819038	4.25676179660486	4.30981956165752	4.57160310752881	4.48666283488373	4.61172985526256	4.29127200725495	4.35241940513918	-0.0205928502672945	0.956911186366453	0.984757116793997
Merged-chr5-138442474-4	chr5	138442374	138442574	+	854.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028130, intron 1 of 4)	intron (NM_028130, intron 1 of 4)	998.0	NM_028130	72154.0	Mm.20263	NM_028130	ENSMUSG00000036898	Zfp157	2610020C11Rik|A630094N24Rik|AI327407|Roma|mszf12|mszf23-1	zinc finger protein 157	protein-coding	4.33904869990592	3.86363327497591	4.45700406247529	4.32940567432524	4.25414381542957	3.77645279880618	4.04968732825506	4.52636368891733	-0.201025327344239	0.662716887218113	0.860182084197343
Merged-chr11-11513555-4	chr11	11513434	11513634	+	827.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347068, intron 8 of 8)	intron (NM_001347068, intron 8 of 8)	24268.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	3.58956545975156	3.18880677019297	3.74672215246237	3.75615868479956	3.62392753563122	3.59009040389255	3.778352050125	3.88372800973398	0.387721753279376	0.454197678676807	0.738062095773103
Merged-chr11-29549587-4	chr11	29549498	29549698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163521, intron 1 of 11)	intron (NM_001163521, intron 1 of 11)	-1558.0	NM_001033865	78294.0	Mm.180003	NM_024277	ENSMUSG00000020460	Rps27a	0610006J14Rik|Uba52|Ubb|Ubc	ribosomal protein S27A	protein-coding	6.69724114406625	7.06824214337584	6.77341337933409	6.80205838431719	7.06166195003425	7.11319763398418	6.93948167295145	6.49325315940341	0.115897801511015	0.606128730355384	0.829351704182035
Merged-chr10-62886117-4	chr10	62886003	62886203	+	821.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253857, intron 1 of 12)	PB1D9|SINE|Alu	1221.0	NM_001253857	52463.0	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	3.87681334575414	3.86571021642039	4.02770607645677	3.77624921840468	3.88951430352057	4.10323839797022	3.96248352524338	4.39149095483387	0.57960387860771	0.184142748074115	0.481418374537847
Merged-chr4-150608819-4	chr4	150608708	150608908	+	891.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	43366.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	5.09672583484929	4.71398656662386	5.09760026687837	5.44193505488547	4.7604403425509	4.50976553487296	4.76422411900989	4.85940513369948	-0.794137639821938	0.0275460790604398	0.158360346813944
Merged-chr12-40788970-4	chr12	40788873	40789073	+	977.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 31 of 52)	intron (NM_172803, intron 31 of 52)	-235117.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	5.62809755100993	5.15908640650933	5.70298446926065	5.99485795350701	5.73352541580322	5.3918492175454	5.54913360139686	5.24362673994808	-0.28574858097034	0.373614713780298	0.677129891634905
Merged-chr9-100531326-2	chr9	100531226	100531426	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 1 of 3)	HAL1|LINE|L1	14808.0	NM_010878	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	2.83207739850875	3.05238566670038	3.37432937148367	3.1518983718807	3.19372861093984	3.14827445105875	3.14894789288021	3.21585347969205	0.230166914432283	0.69151611876438	0.87454056920491
Merged-chr11-74576027-4	chr11	74575916	74576116	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 1 of 24)	intron (NM_001015046, intron 1 of 24)	14142.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	5.51410362031894	5.20957031566707	5.66317674886574	5.70890065950387	5.2256820172718	5.1444720969135	5.48737291983659	5.34219785647909	-0.430804392752428	0.148244090758067	0.429986395112813
Merged-chr6-31184686-4	chr6	31184581	31184781	+	972.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 1 of 2)	intron (NR_110470, intron 1 of 2)	33793.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	6.06074160112485	6.05434340399036	6.18684528597227	6.16767211594253	4.94772552045803	4.87817087200512	5.50414930642555	5.31157710296177	-1.60529663800057	3.70721645092934e-08	1.75800106436176e-06
Merged-chr6-122874478-4	chr6	122874365	122874565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026267)	promoter-TSS (NM_026267)	-92.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	7.15566745310984	7.45203045928316	6.88542613893265	6.98352801964745	7.4638276847564	7.72044897060125	7.18861231507707	7.18627724340339	0.368745580034237	0.0983045552951024	0.343792307359943
Merged-chr16-31929077-3	chr16	31928997	31929197	+	924.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4754.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	3.68493130118469	3.97948244153168	3.68540769681579	3.78648142002815	4.22805674803125	3.86043746335644	3.8798874812883	3.79303793954831	0.480639976652045	0.29348234939405	0.606008746948365
Merged-chr2-52591083-4	chr2	52590979	52591179	+	886.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	-32468.0	NM_001285427	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	4.67277332495725	4.29120863058272	4.63705041035638	4.32113350380867	4.72079667073806	4.42855109624858	4.57780912471956	4.34447452341707	0.12779395314487	0.737572578377777	0.896392006995728
Merged-chr8-111056283-4	chr8	111056186	111056386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028274)	promoter-TSS (NM_028274)	-53.0	NM_028274	72544.0	Mm.24174	NM_028274	ENSMUSG00000109941	Exosc6	2610510N21Rik|C76919|Mtr3	exosome component 6	protein-coding	7.20552448525039	7.06675739265492	6.78150101632127	7.16153239765455	7.14501438194249	7.20817941891957	7.47795487119732	7.14587410488967	0.244560029760611	0.224840695489278	0.533284902067823
Merged-chr2-70939332-3	chr2	70939235	70939435	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	79039.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	3.33534696730977	3.3889585698695	3.39957265870343	3.10365843082773	4.01958505978207	3.51757232161995	4.08331225791561	3.5168920314455	1.66589962140332	0.00138754046279322	0.0175454075536876
Merged-chr16-93938651-4	chr16	93938545	93938745	+	805.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019500, intron 2 of 2)	intron (NM_019500, intron 2 of 2)	-8828.0	NM_001165926	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	3.7179317562518	4.02501420727744	4.052938046204	3.64457933151444	3.84600639204326	3.6595020251959	3.85675171848302	3.82132548517917	-0.18152516979625	0.697171946163356	0.877632986505165
Merged-chr13-22026625-4	chr13	22026579	22026779	+	987.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8964.0	NM_175659	319168.0	Mm.250564	NM_175659	ENSMUSG00000069302	Hist1h2ah	-	histone cluster 1, H2ah	protein-coding	4.75210053046258	4.88535381988907	4.61752858150315	3.98417892366396	4.45563585280138	4.27686423736681	3.84872752616135	3.86113090384977	-1.07447838232937	0.0287984401479758	0.163024057552824
Merged-chr5-88727924-3	chr5	88727826	88728026	+	921.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026735, intron 1 of 5)	L1MC4|LINE|L1	7055.0	NM_026735	68473.0	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	3.49351355219499	3.32429219685897	3.81446372663635	3.66204012557613	4.12711722853792	3.54756060464581	3.75021774586012	3.66202745196026	0.638107409433019	0.214374494894891	0.520126876371935
Merged-chr14-44989961-4	chr14	44989840	44990040	+	857.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008964, intron 1 of 1)	intron (NM_008964, intron 1 of 1)	1829.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	4.02074628980812	4.11190481511826	3.92728250977145	3.9406468560221	3.9688241689313	3.89187379562353	3.38367621834991	4.01887363325774	-0.440503322872128	0.35939830888605	0.665269607786133
Merged-chr18-36359295-4	chr18	36359176	36359376	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081365, intron 1 of 2)	intron (NM_001081365, intron 1 of 2)	10652.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	4.66155948167908	4.93021922928341	4.9391594317683	5.36567484919962	4.94210624334997	4.9643694466813	5.04926626777272	5.00503623223839	-0.0713029079288009	0.837372037304386	0.938294857662405
Merged-chr16-11067056-4	chr16	11066929	11067129	+	901.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009223, intron 1 of 1)	CpG	731.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	4.97398042762413	4.43327225957713	4.55174224141475	4.83775497037547	4.34072252961499	4.50283617159883	4.68672912507454	4.66847989047324	-0.372505138897391	0.321102124699402	0.632824656919975
Merged-chr17-29459750-3	chr17	29459653	29459853	+	746.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31292.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	3.54975488867278	2.95698155593175	3.18386148625922	2.82901629090334	3.95373967874322	3.61642139032525	3.63635513546784	3.74571634328098	2.09149549223765	0.000351224337064752	0.00576563585976292
Merged-chr4-58566908-4	chr4	58566794	58566994	+	917.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13403.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	4.31843935537044	3.65772026247343	3.90091542718592	4.1507745493858	4.35929316450461	4.07776444229075	4.17547969934199	4.19170208727482	0.446052793248174	0.31556773032993	0.627424454669108
Merged-chr16-45375987-3	chr16	45375875	45376075	+	983.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33078.0	NM_001358443	17470.0	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	5.06984479629968	4.84873411716475	5.12383939033365	5.17187989658506	3.68302364059038	3.92042296114741	3.90843113420007	3.92170570591005	-3.13442532185757	4.33961299023818e-12	4.19117114019218e-10
Merged-chr6-129182610-2	chr6	129182510	129182710	+	756.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_053109, intron 1 of 4)	ID_B1|SINE|B4	1995.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	2.92625457972237	3.12829498189834	3.18978165850858	2.89229814142701	3.05720876471872	3.57677752071536	3.29040520082248	3.35578983772016	1.12255811368448	0.0502876668943266	0.232628556144769
Merged-chr1-54477452-2	chr1	54477349	54477549	+	831.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163314, exon 27 of 27)	3' UTR (NM_001163314, exon 27 of 27)	-38423.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	3.16522453818291	3.05594963587591	2.90705834808062	3.04259931793189	3.13729800567917	3.33603888768133	3.09447563350733	3.42770547917483	0.798603272518562	0.154725439577076	0.440052825494733
Merged-chr18-9505183-6	chr18	9505075	9505275	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55021.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	5.84241737833259	5.36377798299217	5.08755192665892	5.64641067860798	5.24809346984164	4.70956985106842	4.91325134255452	5.45288824171316	-0.72184734420189	0.0419196852683458	0.207440670107991
Merged-chr7-125542061-4	chr7	125541947	125542147	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10235.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	4.85371630419706	4.89615128546229	4.70678370161103	4.55510131438525	4.85241413797618	4.62680373661573	4.51950336706839	5.04444852137547	0.0666023620470395	0.851784694937558	0.944100387750672
Merged-chr10-87817031-4	chr10	87816961	87817161	+	993.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41204.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	5.14461917990983	5.05169470425242	5.01088367352305	5.55339976830576	5.1192212203735	5.18571112292298	4.87674544098919	5.04248776971633	-0.321066958937237	0.331295033593185	0.642467227210669
Merged-chr12-104273731-1	chr12	104273631	104273831	+	843.0	f0_balb.idr	Intergenic	Intergenic	10609.0	NM_001199940	628900.0	Mm.436602	NM_001199940	ENSMUSG00000079014	Serpina3i	2B2|EG628900|Gm6930	serine (or cysteine) peptidase inhibitor, clade A, member 3I	protein-coding	3.15213497484388	2.87717809967086	3.29636114417645	3.12014095303498	2.43763309311828	2.77375327960415	2.58313149619295	2.50910797915532	-3.11216966362724	0.000185480313933189	0.0034167451515141
Merged-chr7-6171171-2	chr7	6171071	6171271	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1342.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	3.10031663089204	2.99059141464208	3.10073017741345	2.73100646727912	2.93858583817836	3.15205941810454	2.96477454063652	3.50579833511572	0.708400153848002	0.249634076265856	0.560721509499428
Merged-chr11-46373272-4	chr11	46373176	46373376	+	929.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281966, intron 1 of 16)	Lx8b|LINE|L1	16239.0	NM_001281968	16428.0	Mm.339927	NM_010583	ENSMUSG00000020395	Itk	Emt|Tcsk|Tsk	IL2 inducible T cell kinase	protein-coding	4.86696157792846	4.5217124632112	4.34445667199306	4.86163964278287	4.92916164779397	4.52343481744887	4.74192693146749	4.48263025138042	0.0296464645262388	0.938024016170262	0.977463677909776
Merged-chr6-115601921-4	chr6	115601824	115602024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023290)	promoter-TSS (NM_023290)	-14.0	NM_023290	67027.0	Mm.101316	NM_023290	ENSMUSG00000000439	Mkrn2	2610002L04Rik|C81377	makorin, ring finger protein, 2	protein-coding	6.66702236912817	6.68198995175652	6.65295956198667	6.28169241061548	6.78890061874379	6.76665835799071	6.78992695621335	6.75112074473013	0.303188474645469	0.157670201403219	0.444315791347796
Merged-chr11-80038303-3	chr11	80038217	80038417	+	730.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42674.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	3.02554087286388	2.8771557957638	3.14787007662656	3.04853137150136	3.2935893175829	3.19846782034397	3.24597213251521	3.14622363870285	0.769085714700102	0.165773384190476	0.456728612862158
Merged-chr18-4635601-1	chr18	4635501	4635701	+	547.0	f1_c57bl6.idr	intron (NM_001081963, intron 1 of 3)	intron (NM_001081963, intron 1 of 3)	672.0	NM_001081963	240185.0	Mm.33179	NM_001081963	ENSMUSG00000033960	Jcad	1110056P05Rik|9430020K01Rik|Gm328|mKIAA1462	junctional cadherin 5 associated	protein-coding	2.8303000037773	3.02217216950292	3.05858955276623	2.59652456152198	2.67157143458847	2.80707094677761	2.54850295590548	2.82921195572535	-0.789999804225667	0.245235773143506	0.556284046546467
Merged-chr2-118008214-4	chr2	118008102	118008302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	103000.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	8.29415463586668	7.73088718261746	8.21674927148005	8.32894793108964	8.17369194079786	7.92835489726843	8.13672580921855	8.17001842228591	-0.0749949151535949	0.693475975141394	0.875348934821587
Merged-chr13-9189293-3	chr13	9189185	9189385	+	871.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-87240.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	3.84110567386123	3.76322841601936	3.59312616418009	3.8939546653627	3.59860787941484	3.32634098985875	3.52396231151985	3.64484667037759	-0.792749580686344	0.108780359133452	0.364096547670458
Merged-chr9-48816968-4	chr9	48816890	48817090	+	869.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033324, intron 2 of 6)	MIR3|SINE|MIR	18955.0	NM_001033324	235320.0	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	3.53107993563651	3.51585224865219	3.46910442007162	3.54817758300143	4.16809633408748	3.97671450857724	3.63393487426317	3.98755215372178	1.30463377505154	0.00564431964973862	0.0519804668584222
Merged-chr1-161497492-4	chr1	161497405	161497605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183391, intron 1 of 2)	MIR|SINE|MIR	2848.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	6.26887533164965	6.44299530845194	6.3634290584049	6.49954017413025	6.39501637040408	6.42673314809562	6.25719636689921	6.54281644706382	0.00287867828886301	0.989463722433913	0.995744921520196
Merged-chr12-85477938-4	chr12	85477846	85478046	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010234)	TTS (NM_010234)	4056.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	5.93876390290642	5.71261029211178	5.21056634029256	5.03734607340976	5.95709591636784	5.98427260122944	5.25514685753432	5.97591042570425	0.516554423334502	0.136333159116807	0.41087551582586
Merged-chr5-113622347-3	chr5	113622270	113622470	+	879.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	21233.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	3.69975040998257	3.6033944550072	3.59397087843234	3.98048255320934	3.2285583971937	3.71128844968022	3.68492812092716	3.69813427242286	-0.471350598066	0.365877758008685	0.670510957016407
Merged-chr11-3913362-3	chr11	3913238	3913438	+	907.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153142, exon 1 of 2)	5' UTR (NM_153142, exon 1 of 2)	1326.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	3.71130306252266	3.74862063454748	3.95353877958028	3.58673322381471	3.5354259895585	3.88399620530452	3.74831457797486	3.76177373620594	-0.0466447229378544	0.921261306685849	0.970833179463265
Merged-chr9-108340085-4	chr9	108339988	108340188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001329528, exon 3 of 3)	exon (NM_001329528, exon 3 of 3)	1008.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	5.69835216782784	6.21406959811684	5.79542719209784	5.00501020280806	5.75232302630918	5.53761176745229	5.53985760453656	5.69529288574973	-0.172777175849619	0.615175346987572	0.834302262907657
Merged-chr4-63823347-4	chr4	63823241	63823441	+	955.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR104_Mam|LTR|Gypsy	37943.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	4.93884857828476	4.06515720692931	4.1760710302245	4.77046466010553	4.27780588171308	4.72784442734474	4.6487631551431	4.84227181136026	0.195666753515244	0.658252236758995	0.857745523643216
Merged-chr19-60598422-4	chr19	60598321	60598521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17398.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	6.90633070674516	7.11056784160375	7.02076066641141	7.08941483019581	6.86380209319103	6.80626809395781	6.62716896802506	6.77824862215089	-0.368848794808578	0.0580471609861711	0.253015240161339
Merged-chr5-148594885-4	chr5	148594791	148594991	+	717.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42103.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	4.07994498864948	3.57575070326617	3.65043063578248	3.81570247557023	3.88367532779317	3.82403219649381	3.89136720130051	3.75747320461007	0.138834604958793	0.764132852011259	0.907532074239295
Merged-chr6-129351330-4	chr6	129351225	129351425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177686, intron 1 of 5)	RSINE1|SINE|B4	1081.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	7.62335942986675	8.13799807538629	7.58063954496006	7.25162829951088	7.95174875521304	7.87760031380507	7.52536988990272	7.41311577772622	0.0388792381182858	0.871514520033235	0.951646797914897
Merged-chr19-6481602-4	chr19	6481518	6481718	+	894.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 10 of 22)	intron (NM_001205234, intron 10 of 22)	61452.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	4.20738650634826	3.51789460919827	4.29005085282124	4.27102808972342	4.15052890926319	3.81495255944701	4.18880084886145	4.0237678923444	-0.143515161936366	0.767881211083451	0.909224339615052
Merged-chr17-55718864-4	chr17	55718704	55718904	+	941.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-6168.0	NR_151542	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	4.83332442142544	4.79098663384733	5.16264940868468	4.99933505303322	4.65964825206651	4.1915239283032	4.2703658807168	4.33679578688992	-1.2194831929814	0.00156564817196489	0.019344084574256
Merged-chr10-7211622-4	chr10	7211530	7211730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172546, intron 1 of 12)	CpG	607.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	6.1761249449555	6.76284196405921	6.96679111804153	6.53941120952044	6.15535510453947	6.19973374478162	6.44362963090488	6.17279662000448	-0.583333157477183	0.0212066423271405	0.133074812148773
Merged-chr6-38939273-4	chr6	38939166	38939366	+	983.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	20280.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	5.0493941614181	5.11480049398454	5.18478653960538	5.73137624442668	5.37928855681545	4.99819362167423	4.95364111361736	5.21272180452568	-0.308333635636679	0.373633229818278	0.677129891634905
Merged-chr7-6265906-2	chr7	6265806	6266006	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177416, intron 5 of 11)	B3|SINE|B2	9984.0	NM_001177417	627821.0	Mm.99441	NM_001177416	ENSMUSG00000053367	Epp13	EG627821|Eddm13|Gm6792	epididymal protein 13	protein-coding	3.43430751185672	3.35936937341977	3.37770902775025	3.14137242071298	3.61170240496835	3.55023593904341	3.36506489200399	3.59003628524905	0.74156119845296	0.144733401266476	0.423930146704668
Merged-chr6-125095344-2	chr6	125095244	125095444	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145979)	promoter-TSS (NM_145979)	-637.0	NM_001346610	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	2.99415589929498	2.99841254316479	2.99452643755638	2.7557057860708	3.33286263608933	3.16550175827002	2.98380909805735	2.79449940661929	0.655569644143514	0.285006124900962	0.596783189607437
Merged-chr13-55445139-4	chr13	55445034	55445234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286063)	promoter-TSS (NM_001286063)	62.0	NM_001286063	26385.0	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	8.93079292980602	9.32673421788764	8.92466592633579	8.88279076603248	8.90579446128412	9.25504554903465	9.05975245803103	8.86528601571864	-0.00025881484592857	0.998820203786047	0.999467870580851
Merged-chr17-71966426-1	chr17	71966326	71966526	+	730.0	f0_balb.idr	intron (NM_007439, intron 9 of 28)	intron (NM_007439, intron 9 of 28)	184479.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	2.79562577436035	2.64202896935095	2.73917919826713	2.97797223305682	2.49638579463991	2.43309450692632	2.475891758522	2.33212181604612	-2.07214755972129	0.00734139268287897	0.06303313875391
Merged-chr11-50430342-4	chr11	50430193	50430393	+	840.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172557, intron 1 of 17)	intron (NM_172557, intron 1 of 17)	818.0	NM_172557	216724.0	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding	3.89314693479842	3.51866986683371	3.55228312781812	3.38275028135129	3.61725363943582	3.66987818681146	3.29693457135609	3.80285620291493	0.0570295601043443	0.912481874904139	0.967207481621882
Merged-chr12-73681940-4	chr12	73681816	73682016	+	986.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	97120.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	4.98747126868322	4.95347081200568	5.05106028231474	4.54402429683837	4.8653470791145	4.6140227655399	4.71806007267178	4.81299963419086	-0.245867545847329	0.488045898851828	0.761126159857708
Merged-chr10-44449965-6	chr10	44449898	44450098	+	898.8472289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007548, intron 3 of 6)	intron (NM_007548, intron 3 of 6)	8750.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	3.52306029795666	3.13853627740519	3.41685624931803	3.27935217411301	3.54427844312375	3.41376838514748	3.34746067347094	3.57159311198292	0.465152209173475	0.368778557110503	0.673221351337215
Merged-chr4-150798948-4	chr4	150798834	150799034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54862.0	NM_001356323	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	7.64816218657582	7.36953291821392	7.48699239420467	7.5686226269625	7.08846568764975	7.23294364812907	7.1417567675279	7.45412825462036	-0.390796841949263	0.0372414157061092	0.192526687099308
Merged-chr15-25412690-10	chr15	25412578	25412778	+	980.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	CpG	1086.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	4.68052495151537	4.17832844508657	4.75136114801834	4.57724514683897	4.40136933479745	4.33488414673603	4.42418305611784	4.74812744104868	-0.170095760248543	0.662415202883845	0.860025750147184
Merged-chr14-20181826-3	chr14	20181702	20181902	+	994.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021542)	promoter-TSS (NM_021542)	-20.0	NM_021542	16529.0	Mm.68998	NM_021542	ENSMUSG00000023243	Kcnk5	KCNK5b|TASK-2	potassium channel, subfamily K, member 5	protein-coding	4.3092238997647	4.35247488580956	4.62959131151846	4.53359868418461	3.54908559488429	3.61835554781583	3.62428732380982	4.03826065307042	-2.09490501828623	1.08183035028403e-05	0.000295712759227599
Merged-chr18-56756281-4	chr18	56756171	56756371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48458.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	6.17480122906501	5.72436169803328	5.96291212198188	6.02253452897141	6.38903234850329	6.093158292665	6.39101773013784	6.33637250336475	0.509771488569881	0.0334007547317726	0.1797237202557
Merged-chr1-134435629-4	chr1	134435534	134435734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-19897.0	NM_153128	240756.0	Mm.87398	NM_153128	ENSMUSG00000026455	Klhl12	C3ip1	kelch-like 12	protein-coding	5.2799680246067	5.36590739097591	5.11563894548023	5.45917481536006	5.66765016370032	5.10658640463514	5.31489634464818	5.39539771480413	0.139039061307033	0.647962600356303	0.851923231151848
Merged-chr3-108653928-4	chr3	108653824	108654024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145543)	promoter-TSS (NM_145543)	-3.0	NM_001355632	229725.0	Mm.214545	NM_145543	ENSMUSG00000027884	Clcc1	Mclc	chloride channel CLIC-like 1	protein-coding	7.11704075744724	7.38937741583682	6.81102427240329	6.99199921335191	7.3926599205386	7.38651205686625	7.18449172385476	7.32026026965156	0.313506206595591	0.122967436420891	0.388732419479596
Merged-chr10-30842847-4	chr10	30842748	30842948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013904)	promoter-TSS (NM_013904)	-65.0	NM_013904	15214.0	Mm.103573	NM_013904	ENSMUSG00000019789	Hey2	CHF1|Herp1|Hrt2|bHLHb32|hesr2	hairy/enhancer-of-split related with YRPW motif 2	protein-coding	7.74109850180523	8.10959646579263	8.24493931644517	8.21922229418524	7.92230394269395	7.90348872091397	7.80736243919937	7.62507131137556	-0.357366868919086	0.0543047761188641	0.243349260851462
Merged-chr5-146797298-2	chr5	146797211	146797411	+	869.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2355.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	2.80856635445093	2.8095383363585	2.80884007321984	2.29502984180235	4.1317276021484	3.93414333198931	4.0575167205644	3.38875879000927	7.21512519703048	1.2637599530378e-14	1.9344767676834e-12
Merged-chr15-27659784-4	chr15	27659673	27659873	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 5 of 6)	intron (NM_198301, intron 5 of 6)	21769.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	5.38376797208775	5.43714924718239	4.82544009023429	5.70802312817072	5.11628237158439	5.27715522665882	5.27044882292861	5.43629286971256	-0.216515080568432	0.516356554917736	0.778087543875212
Merged-chr14-18239241-4	chr14	18239106	18239306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011584)	promoter-TSS (NM_011584)	-100.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	8.49876135616563	9.05997163667697	9.06437838628878	8.67915796208777	8.60945057093584	8.6980153752982	8.60841930265045	8.43769896850097	-0.319761817356181	0.0815992525096864	0.309972772980659
Merged-chr17-74459206-4	chr17	74459105	74459305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033367)	promoter-TSS (NM_001033367)	-97.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	7.08620122095386	7.44157215918129	6.85306438737	6.89088081439203	7.21804591052467	7.11337131934132	7.01574316333651	7.09426235305801	0.0395766040932921	0.853514545464896	0.944811306692677
Merged-chr14-121381977-4	chr14	121381877	121382077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2747.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	5.82385076884797	5.38222760644163	6.10193116804575	6.21066432135708	5.58834802294165	5.55347022910095	5.99208838664822	6.07829470854599	-0.170643795847139	0.582150436698145	0.816501953640427
Merged-chr4-135801684-4	chr4	135801585	135801785	+	834.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085509, intron 27 of 36)	intron (NM_001085509, intron 27 of 36)	41970.0	NM_001085509	242702.0	Mm.318639	NM_001085509	ENSMUSG00000037139	Myom3	8430427K15Rik|Gm434	myomesin family, member 3	protein-coding	4.14958947298874	4.05481441816977	4.01226348241519	3.87560282922932	4.11495073921733	4.08518864097883	3.89557259144993	4.10335245930936	0.105506278619575	0.801076777814435	0.923337043240231
Merged-chr5-125441952-12	chr5	125441789	125441989	+	847.8472289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029752, exon 1 of 3)	exon (NM_029752, exon 1 of 3)	321.0	NM_029752	76809.0	Mm.290720	NM_029752	ENSMUSG00000037905	Bri3bp	2410150I18Rik|AI841257|AW742481	Bri3 binding protein	protein-coding	4.06235167038063	3.77209970564224	3.54863206102865	3.87474156273183	3.7466611616927	3.84466122778833	3.76412980858613	4.10195152503341	0.113079984003403	0.808563889926981	0.926119482510179
Merged-chr13-90923045-7	chr13	90922944	90923144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024175)	promoter-TSS (NM_024175)	-78.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	7.35301952653455	7.2443698363013	7.26406388153664	7.02743797817426	6.96977403384204	7.47130691817068	6.88409342562222	6.78468545461784	-0.231442893943277	0.298136418990792	0.610291388684735
Merged-chr18-64623238-2	chr18	64623138	64623338	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001488, intron 1 of 27)	intron (NM_001001488, intron 1 of 27)	37762.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	3.40803231142016	3.13654375224043	3.04063964917515	3.05744635105558	3.10732119388246	2.79973437403165	3.02987747695521	2.91137707975381	-0.789151658760706	0.19813725445664	0.499617813340272
Merged-chr4-109143602-3	chr4	109143505	109143705	+	885.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346502, intron 3 of 23)	intron (NM_001346502, intron 3 of 23)	-5692.0	NM_001355190	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	3.99660762589469	4.13668595985961	4.33366147779526	4.66080774038889	3.38780406761046	3.7936113617525	3.5957427265072	3.60686434675547	-2.14820366560038	2.38456308863519e-05	0.000594920491012844
Merged-chr9-71187588-4	chr9	71187501	71187701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110517, intron 5 of 5)	intron (NR_110517, intron 5 of 5)	18825.0	NR_110517	102635087.0	Mm.444536	NR_110517	ENSMUSG00000111429	Gm32511	-	predicted gene, 32511	ncRNA	5.48134045147492	6.06956977373521	5.51146536959595	5.2457656799155	5.79506264274205	5.9684308424693	5.74198916962224	5.41810282122893	0.229231222007662	0.467125665713266	0.746794640069279
Merged-chr2-155473882-4	chr2	155473781	155473981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	-33098.0	NM_019825	56406.0	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	5.87865313936508	5.30374253508181	5.18054605890235	5.44022642402117	5.8228138053831	6.00920559776648	5.64070670270392	5.87547551620526	0.613718492930744	0.033982723191288	0.181930728252847
Merged-chr14-61440072-4	chr14	61439975	61440175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008466)	promoter-TSS (NM_008466)	-128.0	NM_008466	16648.0	Mm.25548	NM_008466	ENSMUSG00000021929	Kpna3	IPOA4	karyopherin (importin) alpha 3	protein-coding	8.95296159825435	9.11652929077693	9.193645018985	8.90887483856317	8.9186264758578	9.10264358203287	8.92537014863345	8.88101442176079	-0.107691091645497	0.475318489768153	0.752188683234561
Merged-chr5-36751842-4	chr5	36751724	36751924	+	970.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3145.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	4.92034345271976	5.00100166152082	4.7783533274156	4.64745281469995	4.77630050359834	4.70700727483061	4.75591071299452	4.95102314569578	-0.0653106990688013	0.846433999520076	0.941939364807847
Merged-chr18-84859622-4	chr18	84859527	84859727	+	917.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348159, intron 1 of 5)	(CCCCCA)n|Simple_repeat|Simple_repeat	8289.0	NM_001348159	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	4.45905358581577	4.64542428293032	4.57593071784479	4.50335778244962	4.36285356888573	4.31644283688334	4.12196552453769	4.18739432723112	-0.68666092841138	0.0711482970640358	0.286100482273375
Merged-chr5-30897966-3	chr5	30897877	30898077	+	988.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048192, intron 12 of 16)	intron (NM_001048192, intron 12 of 16)	8643.0	NM_001294262	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	3.39617988363528	3.17372153908123	3.6699616636432	3.85850555391138	3.33878196533774	3.73762128532941	3.49924516662598	3.61762064362509	-0.0294075144616909	0.957820146303777	0.984921842301381
Merged-chr16-33917244-2	chr16	33917144	33917344	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	49794.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	2.75345297543224	2.66317064418696	2.75379512058334	2.63563547898426	2.83643937248631	2.72988116538685	2.61805424677507	2.62486835853439	0.060244539777731	0.925091894358888	0.972383544828071
Merged-chr11-94404812-4	chr11	94404704	94404904	+	906.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11828.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	4.70657913876411	4.57869096421593	4.19589640553077	4.31386343288282	4.28055322108784	4.16704264826541	4.17797493337856	4.19339103367253	-0.599942334914037	0.136023261983452	0.410462937286761
Merged-chr11-89977969-2	chr11	89977836	89978036	+	810.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	24958.0	NM_008796	18559.0	Mm.5062	NM_008796	ENSMUSG00000020553	Pctp	PC-TP|StarD2	phosphatidylcholine transfer protein	protein-coding	2.5110490061783	2.30923744785849	2.43470264304462	2.41983528958516	2.74421062433266	2.82899940230255	2.93882766928301	3.05294814664648	2.41467643976355	0.000604149278236748	0.00898703237630788
Merged-chr15-67173287-4	chr15	67173204	67173404	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 1 of 8)	MER44A|DNA|TcMar-Tigger	3578.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	4.86746722103572	5.06656069764199	4.7619772797465	4.55046169241073	4.91469839619149	4.2915504709336	4.73931757773075	4.55946316023003	-0.331956024311481	0.386127557945256	0.687471231171812
Merged-chr18-34331099-4	chr18	34331000	34331200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025527)	promoter-TSS (NM_025527)	-45.0	NM_025527	66384.0	Mm.29452	NM_025527	ENSMUSG00000014504	Srp19	2310020D23Rik	signal recognition particle 19	protein-coding	8.10201268699208	8.26595759778595	7.80048469610731	7.88148235146143	8.00791358512054	8.27467740508747	8.01384319350332	7.81887875616155	0.0176469716317216	0.925516069337627	0.972503515835845
Merged-chr15-27643115-3	chr15	27643008	27643208	+	763.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-12415.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	3.30429921922847	3.37951589845835	3.24495249691383	3.2068316273386	3.23376697381019	3.58513397130531	3.50424953514816	3.18085784468157	0.358731971494982	0.500309267424988	0.768850577358824
Merged-chr13-83518414-3	chr13	83518227	83518427	+	995.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170537, intron 1 of 10)	(CA)n|Simple_repeat|Simple_repeat	-5329.0	NM_001347579	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	5.19312437511021	5.22404165143602	5.6776976662915	5.36639285002514	4.26547500522684	4.37589665748317	4.03978208449828	4.17856931123326	-2.52158132823996	1.25037420184966e-10	9.43800480524461e-09
Merged-chr10-98517817-3	chr10	98517716	98517916	+	760.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-165949.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	4.21313896151609	3.58280761781544	3.53953544738176	3.8903971312136	4.09388338249826	3.77887536319066	3.64636604733069	3.8703801087223	0.0819951052819494	0.870105617923002	0.951209457504859
Merged-chr11-20329864-4	chr11	20329744	20329944	+	840.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018861, intron 1 of 7)	intron (NM_018861, intron 1 of 7)	2869.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	3.40656646899231	3.61092228471269	3.98421941546512	4.03604502269651	3.67626203697806	3.70821617723275	3.68669992285996	3.6994438201394	-0.313809964278375	0.5325187130805	0.788179391355352
Merged-chr17-30137314-4	chr17	30137209	30137409	+	908.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151442, intron 2 of 3)	L1M3|LINE|L1	132270.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	4.5627709106469	4.65175898410358	4.25441341370615	4.86091181509459	4.68921444960641	4.04113034236839	4.58053464432986	4.39328833276266	-0.345622422530976	0.406655382380019	0.703051260897899
Merged-chr3-8931152-3	chr3	8931053	8931253	+	834.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001025261, exon 8 of 8)	exon (NM_001025261, exon 8 of 8)	-7296.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	3.92926768026588	3.4225451104997	3.60371577668877	3.91565583621798	3.87639301067088	3.35142708794988	3.22906825241919	3.37005889788149	-0.764581096860655	0.185987518769959	0.483915587117665
Merged-chr6-42424701-4	chr6	42424614	42424814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9821.0	NM_207028	387353.0	Mm.377914	NM_207028	ENSMUSG00000048284	Tas2r126	T2R12|T2R26|Tas2r26|Tas2r41|mGR26|mt2r35	taste receptor, type 2, member 126	protein-coding	5.97164419535668	5.87942679590244	5.99423424177076	6.47340983472147	5.68390195233291	5.65468274393726	6.08481287710624	5.67688266808747	-0.532861841141831	0.0591422786695622	0.256267191592518
Merged-chr17-67334497-3	chr17	67334395	67334595	+	989.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	19964.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	3.76397699127956	3.62330115598252	4.09312722633421	4.03303033695861	3.36634995372307	3.64958879868164	4.15308272407498	3.86499122850146	-0.303778545694134	0.559624686325691	0.803980525375318
Merged-chr8-41600471-4	chr8	41600457	41600657	+	845.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-183439.0	NM_013522	14300.0	Mm.217312	NM_013522	ENSMUSG00000031590	Frg1	-	FSHD region gene 1	protein-coding	4.06947208647278	4.4806084377605	4.30191550790592	4.82504717892398	3.90054336687105	3.97302210478632	3.83540280906145	4.25607503441565	-1.18045784456401	0.00949248506514056	0.0760239877060134
Merged-chr6-65144793-4	chr6	65144680	65144880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019455)	promoter-TSS (NM_019455)	-50.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	7.79571648280333	7.43810718296601	7.42397541996623	7.84961254974189	7.73900881417366	7.58121967619697	7.54773310790086	7.83592971708262	0.0437827836835218	0.821076492953977	0.931492956341952
Merged-chr10-121796298-3	chr10	121796233	121796433	+	734.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 18 of 21)	intron (NM_001081037, intron 18 of 21)	56403.0	NM_173022	270802.0	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	3.40591075719097	3.41238330722251	3.55742960710267	3.73613339714251	3.00857744985295	3.14831099816547	3.02952139339404	3.23346083878497	-1.70993058806574	0.00312141531029122	0.0329625858983084
Merged-chr2-70661439-4	chr2	70661331	70661531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027352)	promoter-TSS (NM_027352)	-78.0	NR_027343	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	8.14927775201699	8.2444232663571	7.91453203235582	8.39360141547268	8.05225545496952	8.24565924477943	8.14824335580709	8.02941069747721	-0.0981826850704111	0.574365655234354	0.812294316986411
Merged-chr1-63176775-4	chr1	63176793	63176993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160039)	promoter-TSS (NM_001160039)	62.0	NM_018796	55949.0	Mm.2718	NM_018796	ENSMUSG00000025967	Eef1b2	2810017J07Rik|Eef1b	eukaryotic translation elongation factor 1 beta 2	protein-coding	6.06560366000865	6.51835045713704	6.36356719042962	5.90559104571126	6.42567400658158	6.64002881724213	6.01330582472598	6.44416029139968	0.259788408121264	0.327787479637512	0.639171090552293
Merged-chr9-124068581-3	chr9	124068485	124068685	+	859.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33598.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	3.9692573419576	3.92389067603523	3.72055866237266	3.70088259887161	3.87343802305468	3.59620517070625	3.85946806035633	4.01182160871112	0.05668914517631	0.901370512380518	0.963342914941175
Merged-chr15-67481906-4	chr15	67481793	67481993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	255124.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	8.16972035331717	8.45089466130801	7.93254582058329	8.34778813335655	8.17522893882281	8.08069597485926	7.84242070014175	8.0388461946153	-0.259831870066654	0.155864476717859	0.441705659838286
Merged-chr4-118135570-4	chr4	118135454	118135654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161774)	promoter-TSS (NM_001161774)	-608.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	5.60377053893254	5.90083621837808	6.09173900941429	5.41744890045663	5.91512382839035	5.69815096677038	5.75151577302986	5.03432521629251	-0.204524320153296	0.535899069320047	0.790024643355459
Merged-chr10-44634915-4	chr10	44634793	44634993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-176145.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.1263379991549	5.85438684060104	5.82736380044013	6.31831254969425	5.6773563630467	5.61478747308096	6.01777915815157	5.82322515635536	-0.436600998304852	0.106779805389662	0.360348218742401
Merged-chr17-15706154-4	chr17	15706059	15706259	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007690, intron 1 of 35)	intron (NM_007690, intron 1 of 35)	1192.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	4.73802096818613	5.24295491427275	4.69756129808577	4.3864564443844	5.39516692918723	5.03015027213509	4.86810092143302	4.77559708411321	0.496198022041784	0.202077393044138	0.504566133212499
Merged-chr6-124481721-4	chr6	124481607	124481807	+	835.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11406.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	3.84805197754037	3.83843793419424	3.79477829172358	3.80915993539328	4.10202904899353	4.16742457628913	3.98047878831378	3.99537671714448	0.666359113539496	0.112032364882806	0.369936523473429
Merged-chr7-43660156-4	chr7	43660059	43660259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031181)	promoter-TSS (NM_031181)	2.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	6.12472084873412	6.35848133756222	6.37805030695734	6.15746143750304	6.40782633853733	6.63788027603252	6.34540018046408	6.30115621385433	0.259164600421959	0.250186463813088	0.561249063980067
Merged-chr7-143020933-4	chr7	143020832	143021032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_110354)	TTS (NR_110354)	15273.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	6.28477399190167	6.3436336223285	6.61366030099397	6.50989426258998	6.63088121660841	6.36145624930105	6.69531668477199	6.59367415381131	0.193179870605294	0.376456943458463	0.679183554569486
Merged-chr7-16100664-4	chr7	16100561	16100761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025898, intron 1 of 10)	intron (NM_025898, intron 1 of 10)	2081.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	6.56011644029009	6.67667520504652	6.29264509282813	6.75045012487637	6.65400024640087	6.48998593062507	6.62059750819092	6.61948043002398	0.00689126343230186	0.974797684371753	0.990966385645806
Merged-chr3-59265054-4	chr3	59264958	59265158	+	969.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177855, exon 36 of 44)	exon (NM_177855, exon 36 of 44)	-2073.0	NM_001357010	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	4.94009381795483	5.08640342440596	4.976044003151	4.89467193964689	4.926415524147	4.79899098709949	5.25554879279741	5.00683574871094	0.0695807259161808	0.827708681639592	0.933903677361406
Merged-chr14-27114826-4	chr14	27114705	27114905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-29188.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	4.99669453632249	4.86008783688926	5.03007279988916	5.28344581971644	4.85021717235197	4.87864086101499	4.90605034811192	4.37160562201463	-0.586478794180299	0.0962500728512751	0.340016077000393
Merged-chr9-40761625-3	chr9	40761517	40761717	+	776.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 2 of 6)	intron (NM_133733, intron 2 of 6)	-39656.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	3.80090463672769	3.68887174537415	3.2290770499746	3.3691133398233	2.93756785945691	2.83802681204414	2.80393538978071	3.16592245843254	-2.48867459941187	0.000306203478203215	0.00515986206795137
Merged-chr7-132858406-3	chr7	132858284	132858484	+	850.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198017)	promoter-TSS (NM_198017)	-841.0	NM_198017	109359.0	Mm.274824	NM_198017	ENSMUSG00000030965	Abraxas2	AA589499|AI853413|Abro1|C430003P19Rik|Fam175b	BRISC complex subunit	protein-coding	3.32456208108019	3.65304474979788	3.67393147928862	2.71996059825796	3.76415294313733	3.50928785273094	3.60608759633569	4.02619557205499	1.02930014633756	0.107179971284085	0.361185644163901
Merged-chr1-86501768-4	chr1	86501673	86501873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24784.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	5.77296263140556	6.13180541680736	5.08017876442151	5.41585959807459	5.87143322110198	6.02009902789046	5.83791459976039	6.07187972037143	0.477471408494703	0.131407327496415	0.403600524870218
Merged-chr13-43118965-1	chr13	43118865	43119065	+	707.0	f0_balb.idr	intron (NM_001005740, intron 8 of 12)	intron (NM_001005740, intron 8 of 12)	-3874.0	NM_001005748	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	2.58238144711461	2.49393519990369	2.75722886523201	2.96241222227869	2.13157842081031	2.40906471092784	2.22339653203697	2.38006309309963	-2.9810280968089	0.00152308870060596	0.0189035624447134
Merged-chr2-181581874-4	chr2	181581737	181581937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164597)	TTS (NM_001164597)	136.0	NM_026765	68556.0	Mm.232400	NM_026765	ENSMUSG00000089917	Uckl1	1110007H10Rik|Urkl1	uridine-cytidine kinase 1-like 1	protein-coding	5.13956470720366	5.05417249995114	5.82751477405097	5.17902785764489	5.14052886947369	5.31686382244448	4.8146700156035	5.51419098405199	-0.204860886819168	0.564159030647881	0.806599371831898
Merged-chr13-96543522-3	chr13	96543442	96543642	+	906.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012048)	promoter-TSS (NM_012048)	807.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	3.78940947311718	3.78221669764499	3.98627941521748	3.73456001557998	3.72766377050825	4.10931459881805	3.77464092221243	3.93754925294695	0.198647206209589	0.658284953709071	0.857745523643216
Merged-chr3-26866787-4	chr3	26866714	26866914	+	981.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029150, intron 5 of 10)	RMER19B|LTR|ERVK	229183.0	NM_027583	70862.0	Mm.330943	NM_027583	ENSMUSG00000039335	Spata16	4921511F01Rik|4930503K02Rik|Nyd-sp12	spermatogenesis associated 16	protein-coding	5.16569062106188	4.80129964353341	5.93535149648151	5.38800769718536	4.93988992615837	4.83252844486247	5.32418830523228	5.48297802230723	-0.390698799062608	0.311567104679994	0.623627887849188
Merged-chr15-95849965-4	chr15	95849880	95850080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253813, intron 2 of 20)	intron (NM_001253813, intron 2 of 20)	-19908.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	5.63877069329396	5.65565386436777	5.73873203203737	5.55440214051164	5.56660055404244	5.65083626393466	5.5591222650345	5.71069313924007	-0.0337591387914848	0.896153688775545	0.961014288713439
Merged-chr7-99159326-1	chr7	99159226	99159426	+	1000.0	f1_balb.idr	intron (NM_026384, intron 4 of 7)	intron (NM_026384, intron 4 of 7)	-18182.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	4.5162758206135	4.2477186974881	4.05955865111295	4.01910743655545	4.59562987440233	4.34235151260956	4.73720496757236	4.35010611376484	0.726376608671522	0.0692266309603864	0.281361409531739
Merged-chr8-56071011-4	chr8	56070906	56071106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080438, intron 5 of 9)	RLTR28|LTR|ERVL	130181.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	7.24393613719967	7.44020511280437	7.94687488485871	7.69439824439722	7.68861100446125	7.73004814462098	7.73130465359649	7.56551234723417	0.0912660111729326	0.652259037125048	0.854492592043948
Merged-chr12-31950440-4	chr12	31950357	31950557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361928)	promoter-TSS (NM_001361928)	-212.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	9.18471086857421	9.38267468257314	9.33849731026064	9.26992162279011	9.32987455703326	9.48224694935098	9.36117721370242	9.28113985409858	0.0845385733181631	0.541600346392762	0.793339055934698
Merged-chr1-185350528-2	chr1	185350426	185350626	+	799.0	f0_balb.idr|f1_balb.idr	intron (NM_001347210, intron 7 of 9)	intron (NM_001347210, intron 7 of 9)	-12518.0	NM_029735	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	2.82156868818871	2.55776830976564	2.82199657212466	3.05959859317746	2.33634329472869	2.31191657181096	2.2893386981792	2.37146810346938	-3.42382926030965	0.000352209292477201	0.00578047157695058
Merged-chr13-97474688-3	chr13	97474583	97474783	+	790.916687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110432, intron 1 of 1)	intron (NR_110432, intron 1 of 1)	-8018.0	NR_110430	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	2.958286785429	3.37179364417756	3.03270543300583	2.9940900085763	3.43543998405424	3.41087251912995	3.68331787093108	3.65450526460372	1.61907165468121	0.00347610592067633	0.0358744009464725
Merged-chr8-94778678-4	chr8	94778540	94778740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009142, intron 2 of 2)	intron (NM_009142, intron 2 of 2)	6460.0	NM_009142	20312.0	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	6.17031520776917	6.23593518589078	6.48959489498938	6.21221377065662	5.80087347693672	5.59432656423463	6.06138249712086	5.59909979026866	-0.781061060427459	0.00229550902303235	0.0260178402468821
Merged-chr8-34805140-6	chr8	34804914	34805114	+	969.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2596.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	3.88307554405415	3.81431635424659	4.11191801714023	3.38825128097999	3.88072615791855	3.78827516033886	3.53134788197306	4.3373017222923	0.275393406027202	0.600546468096534	0.826836656557895
Merged-chr12-85385898-4	chr12	85385797	85385997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11180.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	8.13360133611913	8.05972718214033	8.11093132359839	8.02260544986243	7.64094419030158	7.46042522989589	7.95177935512669	7.55012815507613	-0.537520889794144	0.00254491602568925	0.028114943006757
Merged-chr2-172440511-4	chr2	172440414	172440614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025542)	promoter-TSS (NM_025542)	-64.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	8.95773509957267	8.79247218830126	8.94883485573189	8.87281430749073	8.34699144280599	8.0940364099223	8.30609535309452	7.90280319007246	-0.898457507154474	7.79828708061754e-08	3.40536365712439e-06
Merged-chr2-51304915-3	chr2	51304809	51305009	+	850.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63078.0	NR_040636	329404.0	Mm.417725	NR_040636	ENSMUSG00000086349	Gm13497	A730015I17	predicted gene 13497	ncRNA	3.84250733562022	4.20481289416006	3.98795225974544	3.64994028468781	3.69884539222441	4.01539984952375	3.72191179017237	3.73453297725837	-0.387123378537221	0.415465811421535	0.709723955764311
Merged-chr11-19027398-3	chr11	19027304	19027504	+	983.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8435.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	4.78003515972019	4.56468169656555	4.74716949877238	4.74044214708787	4.05997234361271	4.32965870356172	4.33020423431155	4.47929850976207	-0.954476725871147	0.0115078750402523	0.0871588675771566
Merged-chr13-43560280-4	chr13	43560173	43560373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081059)	promoter-TSS (NM_001081059)	-82.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	8.05421809963491	8.47280815371015	8.15133262980289	8.12947885164059	8.03832056524549	8.01638531691859	8.38683328893722	7.95366411078319	-0.131009970509597	0.478431540304728	0.754532850325209
Merged-chr10-62275448-2	chr10	62275348	62275548	+	822.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 19 of 21)	intron (NM_010438, intron 19 of 21)	23010.0	NM_009314	21337.0	Mm.8054	NM_009314	ENSMUSG00000020081	Tacr2	Nk2r|Skr|Tac2r	tachykinin receptor 2	protein-coding	2.77402243096262	2.79580440683471	2.63697855647931	2.49721700615311	3.06154742540368	3.0086651226517	2.82772566985857	2.83661514034903	1.2574839955745	0.0472087471509412	0.223675125704376
Merged-chr12-101913150-4	chr12	101913036	101913236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028446)	promoter-TSS (NM_028446)	35.0	NM_028446	109181.0	Mm.208618	NM_028446	ENSMUSG00000021188	Trip11	2610511G22Rik|3110031G15Rik|6030460N08Rik|AI450776|GMAP-210|TRIP230	thyroid hormone receptor interactor 11	protein-coding	6.38356364783107	6.58866102454611	6.64762021452247	6.55143961404363	6.41376992545324	6.32253931149355	6.8049007464488	6.41613528042619	-0.0656386556751333	0.76991281094747	0.909902768985023
Merged-chr7-144923167-3	chr7	144923073	144923273	+	824.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357868, intron 4 of 4)	intron (NM_001357868, intron 4 of 4)	8073.0	NM_001347537	72284.0	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	3.51000413531217	3.64725504346744	3.33165116569311	3.55778223810331	3.33624216305969	3.56931164870822	3.38184796709598	3.93048387107931	0.170713410070948	0.745582412348587	0.899610295100353
Merged-chr8-61931343-4	chr8	61931250	61931450	+	930.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293783, intron 1 of 37)	Lx7|LINE|L1	3263.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	4.22152086967923	4.13364980773197	3.84560229206139	4.74313572597925	4.23871797291737	4.52635837325168	4.15661613704169	4.47319613485585	0.130391028802085	0.778789431445209	0.913793464563878
Merged-chr5-118245122-4	chr5	118245009	118245209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172998)	promoter-TSS (NM_172998)	-84.0	NM_001109902	269695.0	Mm.320042	NM_172998	ENSMUSG00000032850	Rnft2	AW049082|B830028P19Rik|Tmem118	ring finger protein, transmembrane 2	protein-coding	8.97927490867786	8.92222342731	8.7930779996862	8.76744864210185	8.945933564333	9.04716433998586	9.10339785034524	8.90190349524199	0.168168967371219	0.249183099736864	0.560328612484111
Merged-chr3-95624342-1	chr3	95624242	95624442	+	651.333313	f0_c57.idr	promoter-TSS (NM_019561)	promoter-TSS (NM_019561)	-638.0	NM_019561	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	3.8260280481598	3.48150292861102	3.56526999958402	2.7701552841181	3.78988716318826	3.56494198221652	3.89931357845736	4.0005593132415	1.04852725948622	0.0899985986361693	0.327603598428168
Merged-chr14-70107188-4	chr14	70107094	70107294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	7101.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	5.66710330394224	6.1459257864272	6.31051812887267	5.84088006368425	5.79431982325925	6.18355477816762	5.97794358817031	5.79631553665351	-0.105825358625494	0.698530098275477	0.87844064975986
Merged-chr15-36695742-4	chr15	36695636	36695836	+	975.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-86763.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	5.19399848353423	4.43547846371343	4.88418958167794	5.12051497699089	5.41994304504908	5.3976591078837	5.2850638427278	5.02820427237253	0.648776129406822	0.0629161033572401	0.265948412664944
Merged-chr9-118619130-4	chr9	118619028	118619228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	12419.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.78257341206153	6.66056273770172	7.38546154361635	7.50604455869704	6.29331204919673	6.14824599192388	6.51946365246588	6.42465771402939	-1.12623097398988	2.34414328831053e-05	0.000586480756128841
Merged-chr5-123391552-4	chr5	123391447	123391647	+	949.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-3251.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	5.25092938601004	5.34589183662261	4.91122607802361	4.84046061720605	5.27763554820019	5.66577214746749	4.99887286514428	4.90796974507494	0.276397696039198	0.429675436478058	0.7205774241418
Merged-chr1-40322750-4	chr1	40322652	40322852	+	834.895813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1837.0	NM_001356478	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	4.39960471321887	4.43227121889392	4.21647946031874	4.63138349854136	4.4876949623118	4.43861313948234	4.2928366481482	4.595625887854	0.0316656970231097	0.933969286370206	0.976211101991878
Merged-chr4-130629512-4	chr4	130629419	130629619	+	921.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33802.0	NM_030722	80912.0	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	4.58883011693672	4.42704447455006	4.5495508744765	4.66417654856379	4.11327461321546	4.59668802848409	4.71519433575097	4.73489602375995	-0.0269533461339397	0.944659181782881	0.980106371692172
Merged-chr1-75467760-4	chr1	75467671	75467871	+	688.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183022, intron 1 of 9)	intron (NM_183022, intron 1 of 9)	11700.0	NM_001001566	74241.0	Mm.260577	NM_001001565	ENSMUSG00000032997	Chpf	1700028N03Rik|AI414328|D1Bwg1363e	chondroitin polymerizing factor	protein-coding	3.83483651262605	3.89528477474395	3.7304329705344	3.74660983501759	3.92968414211479	3.90314152554208	3.66134990724656	4.06196327128407	0.281216692926675	0.527876651417633	0.784584092112251
Merged-chr12-77052918-3	chr12	77052815	77053015	+	857.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90667.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	4.00866992557824	4.2969976081338	3.80649037778172	4.16011723970354	3.70149205738326	3.74923408652736	3.94470343240572	4.00684325521234	-0.651817282749477	0.150404479773429	0.433033574599801
Merged-chr10-34129159-1	chr10	34129059	34129259	+	677.5	f0_balb.idr	Intergenic	MIRb|SINE|MIR	-1187.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	3.40406317053964	3.43151643895802	3.66890350534368	3.46889980273705	3.18301120326297	3.83579173315636	3.3325025254653	3.40271266973075	-0.134793062356512	0.802862246595474	0.923936032101707
Merged-chr15-25910292-4	chr15	25910165	25910365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-23287.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	6.89407652243493	6.27302891452396	6.77768892592893	7.08623877271222	6.16805997025789	6.49825014028806	6.74312343125978	6.4283183796289	-0.475855080782083	0.0690888377327014	0.280993907832464
Merged-chr13-37537925-2	chr13	37537824	37538024	+	870.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	192579.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	2.56245299196695	2.63127029379823	2.78075198477231	2.33296947350948	3.38658241217955	2.95849783981607	2.83572955362554	3.02398275996381	2.41430600952951	0.000555561143039693	0.00839581456484549
Merged-chr2-32570853-4	chr2	32570767	32570967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010073)	promoter-TSS (NM_010073)	9.0	NM_010073	13481.0	Mm.22001	NM_010073	ENSMUSG00000026810	Dpm2	AW557993|R75484	dolichol-phosphate (beta-D) mannosyltransferase 2	protein-coding	6.91494474590346	6.7585895551817	6.36227866265205	6.48351028790666	6.76527402092495	6.87549954174025	6.65047852213455	6.60269206046918	0.124577470383541	0.579271165138278	0.815292704330909
Merged-chr2-181691815-4	chr2	181691731	181691931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291205)	promoter-TSS (NM_001291205)	-14.0	NM_001291205	56470.0	Mm.274366	NM_026446	ENSMUSG00000002458	Rgs19	2610042F04Rik|AI324841|AW547781|GAIP	regulator of G-protein signaling 19	protein-coding	5.08423886918949	5.22808465478062	4.78266628117534	5.55727691646784	4.91978452780608	5.35520450183442	5.06035317014556	5.08163542528426	-0.203784842575066	0.556877785394169	0.802235069284239
Merged-chr16-49797076-1	chr16	49796976	49797176	+	618.0	f0_c57.idr	Intergenic	ERV3-16A3_LTR|LTR|ERVL	-58578.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	3.26515943923631	3.18183192008766	3.10096724305096	2.8594545842721	3.22355511457752	2.95050207873804	3.145758770649	2.76888966896546	-0.262897632662577	0.673894670485414	0.865892937693567
Merged-chr7-120203974-4	chr7	120203880	120204080	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026458)	promoter-TSS (NM_026458)	16.0	NM_026458	67928.0	Mm.158178	NM_026458	ENSMUSG00000062017	Abca14	1700110B15Rik|4930539G24Rik	ATP-binding cassette, sub-family A (ABC1), member 14	protein-coding	5.02674894165014	5.3532152055002	4.86818406829262	5.43795676070404	5.2589903049098	5.2064544463615	5.80420976757195	5.51658584302499	0.456360340304428	0.170527930283104	0.463725216795457
Merged-chr13-99030787-4	chr13	99030702	99030902	+	978.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46237.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	4.96956485311038	4.97373916952419	4.9362570968808	5.01001447141958	5.08157348832394	4.71291007475163	4.76740499005879	4.82478823834706	-0.213616701575634	0.512221029685942	0.775701492755237
Merged-chr16-23985542-4	chr16	23985450	23985650	+	963.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	3302.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	5.65286145514196	6.10323582333463	5.11776338392681	4.63020375163304	5.6232767454163	5.94319097729755	5.16378843628839	5.22033912875989	0.0508245442966743	0.903651132226247	0.964295858405566
Merged-chr3-15277222-4	chr3	15277100	15277300	+	838.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	55102.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	4.33243430378265	4.7722059825025	5.00793551974583	4.46411741867955	4.28907153983712	4.36487203730675	4.16715247279221	4.42076092415628	-0.804881863404133	0.0455383308572925	0.218612858440091
Merged-chr1-173430538-4	chr1	173430450	173430650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 2 of 8)	ORR1F|LTR|ERVL-MaLR	9946.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	7.18166833291678	6.87985494103694	6.72561053818019	7.07327273893266	7.35412120621776	7.28039258014018	7.07964294449145	6.93731237476401	0.270072237309929	0.198774891856041	0.500445600856718
Merged-chr2-45108845-4	chr2	45108737	45108937	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	1440.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	5.32826354800954	5.58727259919919	5.84565678697515	4.94489733256056	5.57064800232474	5.76208016793918	5.65882422960997	5.41757533593466	0.265288054113524	0.413874813464248	0.708792686767345
Merged-chr9-25150761-2	chr9	25150661	25150861	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020586, intron 1 of 7)	intron (NM_020586, intron 1 of 7)	1020.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	3.47984765435764	3.70703921924468	3.99560021901417	3.58718830370704	3.84072303184354	3.65879573595444	3.79726220588305	3.85919124004641	0.281526101840509	0.552046171602651	0.799304947428348
Merged-chr1-93654171-1	chr1	93654071	93654271	+	620.0	f0_balb.idr	Intergenic	MT2B1|LTR|ERVL	-18444.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	3.70351491290806	3.5853841480346	3.40627077115272	3.28836281761639	3.17100249571843	3.33960251235844	3.27758367126144	3.34733980118502	-0.773128509390823	0.152120537862671	0.43602415191588
Merged-chr6-86654696-4	chr6	86654583	86654783	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010751, intron 3 of 5)	intron (NM_010751, intron 3 of 5)	14476.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	4.81738243792972	5.04093390551465	4.92161797332762	5.17830057825999	4.40359120338033	4.62537006759308	4.56129620900186	4.49000426525151	-1.05336601919833	0.00244679778279024	0.0273158272921491
Merged-chr3-136799105-4	chr3	136799003	136799203	+	858.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 2 of 13)	intron (NM_008913, intron 2 of 13)	129037.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	3.90752822488683	3.66673379368993	3.60391369066708	3.87489692147926	3.86492100050982	3.53455053118503	3.89088557108925	3.6020457807443	-0.106978576341236	0.822966544357056	0.932185203682946
Merged-chr2-73475850-4	chr2	73475740	73475940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	MLT1F2|LTR|ERVL-MaLR	9913.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	6.85983195158268	6.55066417560291	6.99849005487524	7.03998322284964	6.59500618471704	6.79048807358195	6.56368734632693	6.57625461664864	-0.356796576176245	0.100773010351964	0.34847075902849
Merged-chr19-29253979-4	chr19	29253877	29254077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008413, intron 2 of 24)	intron (NM_008413, intron 2 of 24)	2174.0	NM_008413	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	5.98508566315068	5.93760754865961	6.07397525745838	6.18729685106028	6.27146407043927	6.06921934336401	6.43757338475317	6.13167808437231	0.274229399314421	0.248048444040868	0.559137354284593
Merged-chr14-103826530-4	chr14	103826431	103826631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276296, intron 1 of 7)	intron (NM_001276296, intron 1 of 7)	17170.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	5.73383312290342	5.22570293926176	5.33030402664608	6.02655694220741	5.29583274764949	5.50727882302591	5.39513716638113	5.60987460835826	-0.320649291261579	0.320023346515517	0.631849648418196
Merged-chr11-5509340-4	chr11	5509254	5509454	+	925.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-11287.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	3.82505695750862	3.68371318441785	3.88050368484509	3.78163833694941	4.49008580167397	3.56034853427146	4.19159397162636	4.53613039002538	1.20207991931471	0.0136566213930495	0.0982876293362861
Merged-chr7-75828059-4	chr7	75827893	75828093	+	871.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20345.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	3.90922246894047	3.48798906667036	3.56027276519742	3.78599974471348	3.72757242452499	3.55481602242323	3.6556187609747	3.76939257861319	-0.0574041035653233	0.905055520069471	0.964703148687066
Merged-chr5-64234357-4	chr5	64234250	64234450	+	937.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	L2a|LINE|L2	3993.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.91130075766588	4.40437307056227	5.22089988410741	5.361797808926	4.85194768835851	4.53777166801339	4.57564463890204	5.04141095249409	-0.524707700830001	0.19200147368172	0.491529020831217
Merged-chr7-80192499-4	chr7	80192392	80192592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013659, intron 1 of 14)	intron (NM_013659, intron 1 of 14)	5651.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	6.08892885575372	6.45121314015997	6.47697229227759	5.88498738212871	5.84022542933719	5.96733369961164	5.81047319057369	6.02228827020923	-0.510623727619204	0.0555670528512443	0.246756147489906
Merged-chr17-12031435-4	chr17	12031388	12031588	+	771.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016694, intron 10 of 11)	intron (NM_016694, intron 10 of 11)	-87796.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	3.25464304745031	3.14611222571801	3.42961368908754	3.12944422012606	3.13692838285941	3.54681928721848	3.36053498703972	3.7604123722321	0.797761129416095	0.14851263244192	0.430309397727894
Merged-chr13-58996667-4	chr13	58996585	58996785	+	922.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	188988.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	4.36168599481889	4.37104396797499	4.81194099878076	4.5530579220112	4.22567055195989	4.18653077366269	4.46990966184637	4.60410595304811	-0.361648079005716	0.356784937451754	0.66317411451208
Merged-chr7-107599635-1	chr7	107599535	107599735	+	543.0	f0_balb.idr	intron (NM_008905, intron 1 of 24)	intron (NM_008905, intron 1 of 24)	4584.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	3.16563220388463	3.32887630874559	3.27800692791775	3.08921076265711	3.03885130746649	3.277807336431	2.82862120244402	3.16438069809403	-0.512656458139022	0.382260534741699	0.684346251223104
Merged-chr11-103413320-3	chr11	103413244	103413444	+	889.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183034)	promoter-TSS (NM_183034)	-680.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	3.86116796119624	3.7077449694352	3.65831554006619	3.79488987104037	3.68599516949855	3.65967751947139	3.53059304718863	4.03425828166943	-0.0565143454924833	0.9049941634034	0.964695555007872
Merged-chr5-93265661-4	chr5	93265564	93265764	+	938.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1909.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	4.56575622547103	4.99559902688962	4.84517463018051	4.81226473953874	4.97197334384624	5.05182373128375	4.54604349698623	4.64943527177578	0.0208176710687886	0.953044966759147	0.983308033287352
Merged-chr19-10859485-4	chr19	10859372	10859572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133804, intron 10 of 10)	intron (NM_133804, intron 10 of 10)	10307.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	5.54605821009784	5.50870481852172	5.00540715234191	5.20059039581261	5.54648078787076	5.64034182276811	5.59397891673657	5.34713243096144	0.36633428480286	0.214018660789952	0.519688679301607
Merged-chr8-84989556-4	chr8	84989461	84989661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1034.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	5.88604877603496	6.07655986480578	6.02409558548606	6.30651868554556	5.99070868656147	5.61196602684162	6.41020229872562	6.18189227579253	-0.020618808996028	0.940226689992337	0.978487036039704
Merged-chr11-53931239-4	chr11	53931123	53931323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39520.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	5.71959266199324	6.46833312211942	5.44704527120858	5.23556858257757	6.08557152034676	5.6849141227563	5.50728779227791	5.01524763717007	-0.285806348618657	0.472608932335758	0.750726068237093
Merged-chr3-27210429-4	chr3	27210332	27210532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	27428.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	6.57499464133891	6.61200872410798	6.36598090291814	6.53155183309029	6.64698639737591	6.98615466486024	6.62039020092351	6.69423538677303	0.306291593683221	0.148973287167649	0.430942437100956
Merged-chr2-166060192-2	chr2	166060059	166060259	+	709.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 16 of 22)	B3|SINE|B2	67522.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	2.95517846985408	2.97147854087551	2.82312037771469	3.14930401003823	2.92349210705995	3.18551341749033	3.00681743649481	3.23608919262053	0.408655053494183	0.496936019979678	0.766809941166613
Merged-chr10-13276540-3	chr10	13276463	13276663	+	990.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359294, intron 2 of 11)	intron (NM_001359294, intron 2 of 11)	47726.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	4.33822473890606	3.72960671236591	4.29876425082646	4.34740993178267	4.39582072999068	4.04428171337256	3.90617289061988	4.02435807231527	-0.226623128233642	0.622918999233957	0.838811771816982
Merged-chr2-133443634-4	chr2	133443522	133443722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108537.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	6.25476650746512	5.94091313971682	6.40408704235012	6.27476006951541	5.69248074189502	5.81429038762786	5.74129622584041	5.51172949385241	-0.853486994517911	0.000820931999271488	0.0114822398852712
Merged-chr11-54028712-4	chr11	54028625	54028825	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330304)	promoter-TSS (NM_001330304)	-621.0	NM_001330304	30805.0	Mm.274590	NM_019687	ENSMUSG00000020334	Slc22a4	Octn1	solute carrier family 22 (organic cation transporter), member 4	protein-coding	4.52855206920822	4.73653567376586	4.93201100623245	4.78051921234628	4.47659135017536	4.61673952504378	4.59139089633517	4.60967436629423	-0.399835868088689	0.252768776528307	0.564007170674244
Merged-chr19-4510270-4	chr19	4510177	4510377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162946)	promoter-TSS (NM_001162946)	-195.0	NM_001162946	18563.0	Mm.1845	NM_008797	ENSMUSG00000024892	Pcx	Pc|Pcb	pyruvate carboxylase	protein-coding	8.78920272104313	9.10493689270712	8.834599755543	8.48312575384799	8.90520453833179	8.97670942957433	8.70532513782791	8.75201104644442	0.0274169157185312	0.879130760622498	0.954746715269166
Merged-chr12-4907524-7	chr12	4907410	4907610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145441)	promoter-TSS (NM_145441)	10.0	NM_145441	217379.0	Mm.259170	NM_145441	ENSMUSG00000020634	Ubxn2a	6330407P03Rik|Ubxd4	UBX domain protein 2A	protein-coding	6.39634912401697	6.6173494424815	6.36105619402154	6.43611631462962	6.59533549847919	6.62611916102879	6.48423740374269	6.47972309428919	0.133573476743738	0.525897787462641	0.783393228005846
Merged-chr2-163929049-4	chr2	163928964	163929164	+	920.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-10381.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	4.87668771106867	4.56412866955669	4.93775136768363	4.67472175191155	4.17205830518832	4.27390292963601	4.12867006801372	4.3908836618545	-1.21180013359824	0.00162063187083592	0.019851136798181
Merged-chr13-35783174-4	chr13	35783081	35783281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123386, intron 1 of 6)	intron (NM_001123386, intron 1 of 6)	41779.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	5.69003874993758	5.20314441207231	5.80515799331669	5.544689664168	5.47179303419273	5.51094310772916	5.42784284435388	5.53484296972255	-0.149019832906018	0.602071132707182	0.827431600688833
Merged-chr5-107708469-4	chr5	107708371	107708571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4991.0	NR_045871	654809.0	Mm.399159	NR_045871	ENSMUSG00000106333	4930428O21Rik	-	RIKEN cDNA 4930428O21 gene	ncRNA	6.0536034176394	6.52315653525245	6.89500256174455	6.39739863311817	6.20330187333126	6.54136585276602	6.42013277707239	6.6236829261556	-0.0708380387356018	0.784097257862896	0.91594470512568
Merged-chr7-127196088-4	chr7	127195994	127196194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027353)	promoter-TSS (NM_027353)	-17.0	NM_027353	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	7.56090492044375	7.36326922688082	6.89577886970702	6.94178256504932	7.51993438759102	7.476253075379	7.05954905363424	7.51391880360987	0.260513929844336	0.257758275152331	0.569608784519116
Merged-chr1-191894583-4	chr1	191894467	191894667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030669, exon 5 of 5)	non-coding (NR_030669, exon 5 of 5)	-12214.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	7.89751768035786	7.84605907378552	8.05302007461827	8.10450205736563	7.68996822837691	7.45155026619708	7.86782953128478	7.73393390919826	-0.374213602038659	0.0347249060270439	0.184454036276042
Merged-chr7-101539968-3	chr7	101539844	101540044	+	917.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	15858.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	3.29032546776985	3.24998066780767	3.23988167698104	3.43199069522509	2.7909129362619	2.98416776847795	2.87236486539005	2.94554270180313	-1.91926592279641	0.00219554488750297	0.0251289097198222
Merged-chr4-44014938-4	chr4	44014847	44015047	+	919.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080384, intron 2 of 5)	intron (NM_001080384, intron 2 of 5)	2297.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	5.00229891989946	4.41094571905948	5.1208610404201	5.29371477761204	4.48352905814219	4.35013197793021	4.6274918729594	4.51786871080055	-1.0716907957445	0.00638238662088287	0.056800687332811
Merged-chr4-120926269-4	chr4	120926161	120926361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-1256.0	NM_001160043	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	5.63328933288216	6.32278035685222	5.94911523050769	5.7257758044182	6.0845182643691	5.9406176025899	5.4917770101263	5.35616424350825	-0.276564260062226	0.38250654588603	0.684560538944663
Merged-chr7-122033545-1	chr7	122033445	122033645	+	580.0	f0_c57.idr	TTS (NM_026140)	TTS (NM_026140)	-12347.0	NM_028758	74105.0	Mm.29619	NM_028758	ENSMUSG00000030872	Gga2	1200007E24Rik|mKIAA1080	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding	3.09611050111602	3.22010000872578	3.02822932836714	3.38845028920796	3.47027752892027	3.27181428156342	3.4796601794342	3.44284860914926	0.76322191348784	0.170135381035744	0.46312652282473
Merged-chr9-51990989-1	chr9	51990889	51991089	+	548.0	f1_balb.idr	Intergenic	Intergenic	-27387.0	NM_007996	14148.0	Mm.1061	NM_007996	ENSMUSG00000032051	Fdx1	-	ferredoxin 1	protein-coding	3.45760336202216	3.3360457903878	3.34329816048461	3.79985657664119	3.44617900886102	3.51516872475206	3.44477788119846	3.34166327619852	-0.262067885264125	0.622871662543139	0.838779765559114
Merged-chr15-53134398-4	chr15	53134305	53134505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	211778.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	6.26687800682816	6.34015106666467	5.96033699415673	6.73010841953423	6.03359240961041	5.82718322724901	5.97525505326144	5.9088250269593	-0.664885814094913	0.0130209731360509	0.0950877035858177
Merged-chr6-57513858-4	chr6	57513750	57513950	+	683.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175523, intron 6 of 6)	intron (NM_175523, intron 6 of 6)	21576.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	3.77328613967574	3.87545781000755	3.96549569515246	3.35632788135643	4.07291327870894	3.99600683094953	3.65168434883726	3.3505574821451	0.129792280189178	0.810336521869166	0.92679579587174
Merged-chr17-34093463-3	chr17	34093371	34093571	+	865.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046183, intron 2 of 4)	intron (NR_046183, intron 2 of 4)	1092.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	3.7088983203283	3.933599865866	3.87389454944995	3.34085233250937	4.31571422281846	3.9438382265841	4.04670624428501	4.06267194944431	1.07623032359531	0.0234598271586006	0.142199355984163
Merged-chr10-40212603-4	chr10	40212496	40212696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34383.0	NM_001042556	67239.0	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	6.97544249048032	7.34178724443919	6.98945157912909	7.03782725954234	6.92052716353832	7.08773428023895	7.1201079364082	6.90578668780233	-0.120747381363083	0.544054738955289	0.795027379566929
Merged-chr6-142508025-4	chr6	142507951	142508151	+	975.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302765)	promoter-TSS (NM_001302765)	-94.0	NM_001316322	16832.0	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding	4.84717806922586	5.6308246072178	5.76417412276361	5.83078182446956	4.75539366974692	4.90183918304454	4.90526011332004	4.88579933433298	-1.34681363329282	0.000138525564529429	0.00266994615695646
Merged-chr2-48814872-3	chr2	48814765	48814965	+	798.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007396, intron 1 of 10)	CpG	756.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	3.39534764695999	3.28290976951999	3.56801483943908	3.20849696751626	3.90871673494588	3.51166378838215	3.65550714855557	3.76455742090415	1.1989120119288	0.0163813542564475	0.111740145148029
Merged-chr13-92668436-4	chr13	92668316	92668516	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172588, intron 2 of 11)	intron (NM_172588, intron 2 of 11)	57278.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	5.14958307235895	4.85852644522097	4.83490813510258	5.10857728618855	4.6443384395513	4.27076016396265	4.73854418601707	4.67959509040843	-0.834131275753206	0.0188832325185155	0.123085128886027
Merged-chr12-86265810-3	chr12	86265713	86265913	+	901.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027405, intron 6 of 9)	RMER10B|LTR|ERVL	23955.0	NM_001324488	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	3.33879886018339	3.11431124272752	3.21545760961055	3.08971029742182	3.80229967935331	3.45476321147971	3.72417616346937	3.27712352442895	1.39956283907909	0.00862378323630869	0.070889509986975
Merged-chr11-120729738-4	chr11	120729606	120729806	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007621, exon 8 of 8)	3' UTR (NM_007621, exon 8 of 8)	2315.0	NM_007621	12409.0	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	5.12690893220499	5.22783365252929	5.03417884534976	4.39478746939977	4.81556865828469	4.99912120751563	5.10210611743343	4.52131789761845	-0.194077640334997	0.619858100804876	0.836874864990996
Merged-chr2-124649211-4	chr2	124649115	124649315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	RMER15|LTR|ERVL	-4366.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	5.99146080828994	6.19259776464716	5.83106955547493	6.0091073178294	6.2015398119185	6.07840175363811	5.82571020500344	5.69773660006725	-0.0616321959083743	0.811762909148656	0.927217281441238
Merged-chr10-127538051-4	chr10	127537963	127538163	+	968.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008512)	TTS (NM_008512)	-3504.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	4.59535821677722	4.91178434812141	5.02286766028087	4.81204040219943	4.99160496072875	5.34805886374344	4.86012859856718	5.01943216056223	0.431448082874287	0.193566471948714	0.493731393226286
Merged-chr8-121947886-4	chr8	121947766	121947966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2626.0	NM_016812	53325.0	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	7.24534241924588	7.2155572285181	7.03511477138136	7.06438110476362	6.79261777793275	6.73205782954882	6.96283950980367	6.87552292179777	-0.411982138177769	0.0322307529609641	0.17567392377677
Merged-chr6-38066369-3	chr6	38066272	38066472	+	764.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080467, intron 14 of 20)	intron (NM_080467, intron 14 of 20)	-19376.0	NM_177200	320590.0	Mm.197449	NM_177200	ENSMUSG00000029830	Svopl	9430071P14Rik	SV2 related protein homolog (rat)-like	protein-coding	3.79501281073713	3.59936674749885	4.09061539738257	3.49533586957842	3.67841185178638	3.39153782760628	3.57570122283688	3.53090715154849	-0.630400052249125	0.223745480845434	0.531847393228294
Merged-chr8-104219282-4	chr8	104219155	104219355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001141922)	TTS (NM_001141922)	29303.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	6.72949951502621	6.54251930005521	6.42165990962219	6.31678240828059	6.04635772756981	5.93655590330574	6.06855556289592	6.07367416463124	-0.707972459841192	0.00252464471659442	0.027969134051747
Merged-chr4-139176026-4	chr4	139175939	139176139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033543, exon 3 of 3)	non-coding (NR_033543, exon 3 of 3)	4616.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	6.98710622452381	6.63761014613474	6.53717254274823	6.80796960443746	6.62211291397357	6.69729508531922	6.53711986140229	6.88494964850353	-0.0952486751390154	0.660501038889067	0.858934930978074
Merged-chr13-100744214-4	chr13	100744111	100744311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025369, intron 1 of 3)	CpG	448.0	NM_001190264	66128.0	Mm.306173	NM_025369	ENSMUSG00000061474	Mrps36	1110018B13Rik|S36mt	mitochondrial ribosomal protein S36	protein-coding	6.59044035615034	6.58475125011999	6.36816680772167	6.50417948684263	6.35663876923807	6.66989782773438	6.9339609700059	6.61798543223961	0.199171667048193	0.379228409519525	0.681816088941406
Merged-chr6-29758661-2	chr6	29758561	29758761	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176996, intron 9 of 11)	intron (NM_176996, intron 9 of 11)	-9782.0	NM_021414	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	2.77603458976644	3.07825038464335	2.99875218359751	3.0541821131092	3.25226968092763	3.62357910006614	3.39370409155209	3.24671977812377	1.49208715990461	0.0115522739038038	0.0874486125916037
Merged-chr6-122756069-2	chr6	122755969	122756169	+	852.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13324.0	NM_011401	20527.0	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	3.19567291949949	3.14205400995231	3.19607589071597	2.74517209943125	3.75064723619702	3.48892415989695	3.3025437212726	3.31397960704219	1.52895024378059	0.00891007032780526	0.0726305423571748
Merged-chr9-45197245-4	chr9	45197136	45197336	+	907.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	1470.0	NM_001198971	408059.0	Mm.249297	NM_001198971	ENSMUSG00000091996	BC049352	SMIM35	cDNA sequence BC049352	protein-coding	4.70614975727065	5.57126225985571	5.20839775915464	4.61428417043355	4.95673731962381	4.51838573932318	4.76334404490953	4.32878054159462	-0.8255326910718	0.0524057704187782	0.238487171434712
Merged-chr3-96593551-3	chr3	96593493	96593693	+	815.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027241, intron 1 of 7)	RSINE1|SINE|B4	588.0	NM_027241	69870.0	Mm.292739	NM_027241	ENSMUSG00000028104	Polr3gl	2010003I19Rik	polymerase (RNA) III (DNA directed) polypeptide G like	protein-coding	2.9951578178005	3.13685016598289	3.11226355723796	3.00584133371182	2.90178021730623	3.10466085621094	2.7188603871244	3.05361260199982	-0.473646830419387	0.433193400976751	0.722830392839943
Merged-chr11-44331603-2	chr11	44331503	44331703	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68460.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	3.12985280059961	3.20404404010619	3.1301920720657	3.281220386435	3.45505143820359	3.74870311034298	3.36306722492404	3.48191258874529	1.11532744974256	0.036098049072565	0.188871928615569
Merged-chr5-143061240-3	chr5	143061141	143061341	+	964.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	51779.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	4.15409724042621	3.8254955687033	3.59843928267807	3.9248237494292	3.5002574465833	3.71663486268413	3.84361839462057	3.34245493801799	-0.845542914668737	0.0966575154625222	0.340574096588254
Merged-chr11-23953745-4	chr11	23953656	23953856	+	954.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C2|LTR|ERVK	-58486.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	4.35423097549884	4.24590535954356	4.39631428708653	4.08941746928289	4.48520383296276	4.14502262853234	4.10788094853753	4.50990939734877	0.166467231094864	0.679819443178452	0.86857902618052
Merged-chr7-145029274-4	chr7	145029152	145029352	+	929.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89327.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	4.21894575937118	4.20740510333228	4.26541289881325	4.13077364183969	4.72909165366795	4.24831020670694	4.33263951410151	4.16957566732986	0.490227941281299	0.223097652395722	0.531170612293098
Merged-chr4-135820417-4	chr4	135820311	135820511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35660.0	NM_001284196	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	5.1013799918023	5.22899950216243	5.23251324078556	5.30309791808204	5.37997500428274	5.24268636932035	5.1438361436206	5.25951257140679	0.0711362052652917	0.806438970269151	0.925422083168378
Merged-chr13-19365834-1	chr13	19365734	19365934	+	700.0	f1_c57bl6.idr	intron (NM_001347485, intron 7 of 7)	intron (NM_001347485, intron 7 of 7)	29979.0	NM_024270	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	3.12963029538876	3.03167541084845	3.06322222685678	2.96389388211677	3.45013921388246	3.53827100701431	3.40670767895282	3.51945388870597	1.63212080261595	0.00190283452591511	0.0224949109317574
Merged-chr5-32013223-4	chr5	32013104	32013304	+	874.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 10 of 11)	intron (NM_144541, intron 10 of 11)	-123268.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	3.61538021848975	3.58848575244697	3.77800312616493	3.98833126001297	3.6116963149772	3.61157261367326	3.81158397676018	4.08855946441603	0.0814936227278035	0.868641208395239	0.950762137632278
Merged-chr4-129696775-4	chr4	129696667	129696867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199305)	promoter-TSS (NM_199305)	78.0	NM_199305	230770.0	Mm.257157	NM_199305	ENSMUSG00000053730	Tmem39b	6330509E05Rik|BC037095	transmembrane protein 39b	protein-coding	5.47610298920701	5.39470734185485	5.61072550094489	5.28908637126538	5.5182455896592	5.4402218356234	5.50439655498521	5.83744862883486	0.257758162807828	0.357359330534319	0.663494847536382
Merged-chr17-24528075-4	chr17	24527985	24528185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172114)	promoter-TSS (NM_001172114)	-147.0	NM_001172114	224619.0	Mm.275150	NM_153792	ENSMUSG00000052752	Traf7	RFWD1	TNF receptor-associated factor 7	protein-coding	8.90393998753352	9.02144503118537	9.01757784663576	8.99332455679301	8.98681997742936	8.98460055616108	8.96364715126306	8.80533524983822	-0.0588830223486885	0.673927194154532	0.86590605712707
Merged-chr2-181188761-4	chr2	181188655	181188855	+	938.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_151465)	TTS (NR_151465)	1508.0	NM_001356427	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	3.8444938135322	4.43887878635096	4.28280569243253	4.5151509438416	4.42360516506435	4.3629527968524	4.58822198614588	4.67728879881753	0.476450388900898	0.254464876819643	0.565858210726525
Merged-chr4-152136738-4	chr4	152136652	152136852	+	836.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207691)	promoter-TSS (NM_207691)	-427.0	NM_207690	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	3.90472882952967	3.94247117265999	3.45890400790733	3.60420801958796	3.80558537909488	3.92776844798339	3.93412999433775	3.85487680262529	0.411649385542318	0.376984778466572	0.679609608040715
Merged-chr5-139734975-4	chr5	139734881	139735081	+	952.212524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	1352.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	4.31708229423229	4.5783871897013	4.63788743001973	4.60104157033244	5.08136601053166	4.99730959446835	4.53340097328165	4.89100559843552	0.737261765753643	0.0392874877914344	0.199489520153125
Merged-chr16-11420452-4	chr16	11420349	11420549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 10 of 20)	Tigger17|DNA|TcMar-Tigger	14801.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	6.43058594033335	6.06265722251425	6.25752932015258	6.5833112323898	5.88440237697056	6.18770171047808	6.02429739540593	6.19573110753645	-0.441802272761549	0.0760824465116658	0.297880773391301
Merged-chr12-117736180-4	chr12	117736073	117736273	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 22 of 27)	RLTR42-int|LTR|ERVK	-107688.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	4.87887065427329	5.45057506542269	4.8391489575988	5.09387611178334	5.37443715746124	5.24024435335275	5.13961031538977	5.28312244569758	0.314962855628401	0.32652550387083	0.637984047214434
Merged-chr7-106236464-3	chr7	106236314	106236514	+	583.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21074.0	NM_029000	74558.0	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	3.09760722464528	2.88349388145962	3.38768951892055	3.15480015838834	3.12304285550669	3.20994592222762	3.32095490407576	3.57739703358466	0.646422884102695	0.264630170956738	0.576566406596513
Merged-chr11-84442781-3	chr11	84442682	84442882	+	806.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019816, intron 11 of 12)	intron (NM_019816, intron 11 of 12)	70719.0	NM_019816	56321.0	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	4.35956007388605	4.02210720818112	4.28090737794528	4.49678413174923	3.78498229216016	4.13173462298815	3.99098643161975	3.7855638497036	-1.02063649904916	0.0202192612268502	0.128996516485362
Merged-chr14-76687240-3	chr14	76687144	76687344	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015485)	TTS (NR_015485)	9676.0	NR_015485	73272.0	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	4.00248695588381	4.21886933423653	3.93499538898101	4.27667589749384	5.45318084227365	4.9788850797387	5.74494373027637	5.0971813323231	2.51749937954387	2.24372608777793e-09	1.35344219662666e-07
Merged-chr10-41523978-4	chr10	41523868	41524068	+	959.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016898, intron 3 of 5)	intron (NM_016898, intron 3 of 5)	4468.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	5.03522430032968	5.1810038693703	4.85576875605554	5.28420452257981	5.06473149262275	5.06887463428138	4.90754271278857	4.8906884866446	-0.245559237255457	0.44240839360249	0.729114602217242
Merged-chr14-101594490-4	chr14	101594350	101594550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	14741.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	7.32932852668973	7.03913221245922	7.59233729588675	7.47666580477117	7.278671953005	6.94889281471653	7.1677507206616	6.91311266981571	-0.384605153954182	0.0689692743766498	0.280651954085042
Merged-chr19-5818112-4	chr19	5818008	5818208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15436.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	7.68658609927401	7.78239457282887	7.18581645308607	7.41772701324591	7.52483174568568	7.51936521367765	7.41542725416157	7.40815855739998	-0.0905122408271836	0.647865210731365	0.85185825899816
Merged-chr11-20436344-3	chr11	20436231	20436431	+	736.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	-103618.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	3.12778031740992	3.0876555270005	3.41096204060499	3.14255562120269	3.43796756645036	3.30051541361923	3.34582703887077	3.18822785270395	0.492764260802861	0.360990871930179	0.666270060569595
Merged-chr12-59131388-4	chr12	59131311	59131511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165253)	promoter-TSS (NM_001165253)	-42.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	8.10276162496252	8.37472355249848	8.23444757114166	8.16773093192045	8.45742882956038	8.48098725645135	8.34514096212549	8.29781360173182	0.222603564111182	0.155085846885225	0.440637693415433
Merged-chr3-105803820-4	chr3	105803736	105803936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2455.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	7.69179517019832	7.53024564194359	7.55007154972663	7.27419035714931	7.40828931262238	7.70016740967227	7.63953303288653	7.31038339578529	0.0140072647181588	0.942677119390375	0.97924453351655
Merged-chr16-95797364-4	chr16	95797248	95797448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94941.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	6.40212296022956	6.49866086808426	6.96219837108383	6.93056853786239	6.82770324892853	6.60044485331901	7.14871225371581	6.59205133419096	0.119694457470846	0.628825740131202	0.841823003934767
Merged-chr5-112995738-4	chr5	112995636	112995836	+	854.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	19802.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	5.13722684542007	5.01231121628719	5.65279178336226	5.82160496650782	4.49839758121137	4.63060709842671	4.94403430824854	4.63742305250487	-1.51602506434316	4.61224147751338e-05	0.00105493167136223
Merged-chr7-134670759-4	chr7	134670656	134670856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033420)	promoter-TSS (NM_001033420)	69.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	5.85823412115795	5.79985025379958	6.08901896306356	5.89213882158307	5.55118401335475	5.9873016146613	5.73481746440549	5.57412883146893	-0.322217537166349	0.2189542628833	0.526352426390726
Merged-chr17-47759826-3	chr17	47759726	47759926	+	916.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	21895.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	4.39851259321537	4.90616993206932	4.48563224827592	4.7238519267314	4.50654667208063	4.28092290051	4.33473605862891	4.44034809114678	-0.572061378726024	0.133557317321191	0.406885648416585
Merged-chr4-109116683-4	chr4	109116595	109116795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	intron (NM_001355190, intron 2 of 21)	1341.0	NM_173350	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	5.98843322118479	5.90333430934506	5.73855746783274	5.64432379874713	5.79756003360056	6.07796292795683	5.93807584909807	5.38933347337076	0.0102317152569435	0.970670383127087	0.98949297816832
Merged-chr4-131861229-5	chr4	131861085	131861285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025297, intron 5 of 9)	MIRc|SINE|MIR	-12454.0	NM_020587	57317.0	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	4.92970669355466	5.14694705616661	4.81180210707126	4.80844655425915	5.14470427244182	5.21458627363635	5.26434940857922	5.56658114199397	0.712484808773641	0.0232842262750023	0.141484372718831
Merged-chr7-120823428-3	chr7	120823324	120823524	+	745.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19407.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	3.69131959802281	3.45497407560129	3.38301526307015	3.25934557279825	3.5659994054998	3.23860512897478	3.25021625878226	3.64313106015824	-0.0227469845733934	0.966434568718518	0.988139972127125
Merged-chr11-34008687-7	chr11	34008630	34008830	+	947.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-15537.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	3.35146125036949	3.36334738449828	3.48094322664969	3.33241257761777	4.08947862801439	3.82810352890799	3.88187594500448	3.94118785450508	1.7486938034895	0.00017993354216358	0.00333354752672084
Merged-chr4-150341012-3	chr4	150340914	150341114	+	856.727783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	59098.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	4.72907449938475	4.36307238265854	4.08701500037232	4.48506301238618	3.74147305915334	3.87599268474229	3.91461966072597	4.03444940407683	-1.44012313237208	0.00115538217553544	0.0151118978082391
Merged-chr13-119602075-3	chr13	119601943	119602143	+	897.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-21776.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	3.75853824199417	3.66501015526634	4.12692353104947	3.80627607913307	3.69946131494617	3.93236665522927	3.45056177604866	4.04192993609387	-0.143711024037133	0.769427423677385	0.909742530773464
Merged-chr7-58859141-4	chr7	58859028	58859228	+	900.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	200926.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	4.032718137047	4.34654838131408	4.61903098663216	4.93446407279628	4.12352900381208	4.15925727230683	4.48448319863818	4.54153420713528	-0.46828699765131	0.294007498124689	0.606390997334682
Merged-chr2-113449459-4	chr2	113449356	113449556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	8392.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	5.47953296336614	5.30490120218484	5.76329430690194	5.93996439795494	5.36685436066005	5.50552389983985	5.84329195024296	5.44754094797709	-0.187776250516	0.538656893207969	0.791679929829652
Merged-chr2-113848355-4	chr2	113848252	113848452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_181416, exon 1 of 12)	5' UTR (NM_181416, exon 1 of 12)	309.0	NM_181416	228482.0	Mm.45753	NM_181416	ENSMUSG00000041219	Arhgap11a	6530401L14Rik|mKIAA0013	Rho GTPase activating protein 11A	protein-coding	6.8462555359219	6.83439955437613	6.87636945568665	7.41437051159733	7.38161908818939	7.15026363505044	7.46713741101706	7.40003659841241	0.432320221843929	0.0537808245056505	0.242052726612157
Merged-chr5-72851950-4	chr5	72851862	72852062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 1 of 17)	L2|LINE|L2	16486.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	6.22370570482862	6.06957743283194	5.83907261031641	5.83673429195447	6.03455021314061	5.83804588949634	5.65909908119957	5.5123805887996	-0.333021995563639	0.222069234951074	0.530087061087981
Merged-chr2-59642855-3	chr2	59642755	59642955	+	665.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	-3914.0	NM_001290659	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	3.37906805641601	3.49335784697041	3.54197321042569	3.96516983086047	3.48195354288792	3.08748729816688	3.11683726173626	3.3777511305923	-1.17932849123513	0.0463720003316818	0.221316388065494
Merged-chr7-114530779-3	chr7	114530679	114530879	+	821.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011055, exon 13 of 16)	exon (NM_011055, exon 13 of 16)	32193.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	4.24949516761873	3.9932750138595	3.91040834939691	4.06739437494165	3.77350922720004	3.63161256741573	3.74046508570946	3.69698164568171	-0.998731116222751	0.028050246265006	0.160265570629062
Merged-chr2-157430075-3	chr2	157429955	157430155	+	836.0888669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 1 of 13)	B1F1|SINE|Alu	5762.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	3.91019592078814	3.84626427263743	3.73331484565952	3.53443199820555	3.34965535532359	3.46214761850731	3.20288116206168	3.40785153722108	-1.35043597251068	0.0107743867514668	0.0833597907155061
Merged-chr11-117413362-4	chr11	117413258	117413458	+	980.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1031.0	NR_132097	105827746.0	Mm.388009	NR_132097	ENSMUSG00000086588	Gm11729	-	predicted gene 11729	ncRNA	5.82363165466482	6.20478570236757	5.98370965378128	6.25491909805334	5.71249237349646	5.4758399984288	5.77076018466816	5.97943126886221	-0.55044765540989	0.0383931694860819	0.196546850607726
Merged-chr1-85896906-4	chr1	85896815	85897015	+	986.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	2405.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	4.89501057594163	4.87299408032425	4.89581177693866	4.91973488106419	5.45037868790068	4.99523180509822	5.22876377684562	5.0683439331943	0.600145011582578	0.0554777961091516	0.246433727487101
Merged-chr1-105663254-4	chr1	105663137	105663337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029349)	promoter-TSS (NM_029349)	439.0	NM_013784	27392.0	Mm.268911	NM_013784	ENSMUSG00000056536	Pign	Gm20308|PIG-N	phosphatidylinositol glycan anchor biosynthesis, class N	protein-coding	6.10193967752075	6.36430385373285	6.41570593055901	6.57767121731774	6.25960188509951	6.40625270369028	6.55932707598733	6.49477521416216	0.0560256328315262	0.809352759250204	0.926399566100386
Merged-chr15-28189895-4	chr15	28189810	28190010	+	874.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13856.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	4.00356062252399	3.70505709284588	3.60369394510982	4.12981052639213	3.98962869915475	3.85260833364848	4.32764925981238	4.58449466986078	0.850202961846918	0.0843704549099725	0.316040659406217
Merged-chr5-77252251-4	chr5	77252086	77252286	+	633.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13308.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	2.49528088464882	2.62215391758663	2.70616478998885	2.53015402400378	2.88322844683061	2.87727766666961	2.81904941064171	2.82849881224832	1.29586089768509	0.0398776253926972	0.201371672085373
Merged-chr14-54386559-2	chr14	54386459	54386659	+	786.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	22913.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	2.86445592772044	2.86140376954652	2.80496587490328	3.11447988993571	2.48818069689763	2.84837140048532	2.52771743715742	2.60581990278714	-1.55598557305489	0.0276767176504272	0.1587558292884
Merged-chr2-155592762-4	chr2	155592664	155592864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008180)	promoter-TSS (NM_008180)	46.0	NM_001291111	14854.0	Mm.252316	NM_008180	ENSMUSG00000027610	Gss	AI314904|GS-A/GS-B|GSH-S	glutathione synthetase	protein-coding	7.16307766642499	7.36777695019265	6.86948728540995	6.89557298667494	7.14689901424096	7.57934536494679	7.27835313695463	7.27900142638741	0.325396378909658	0.126665419985512	0.39568036428955
Merged-chr2-52938477-4	chr2	52938362	52938562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	80594.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	7.99859416932336	7.8870076710769	7.53945517367976	7.74331806503138	7.5894637048376	7.84042097506288	7.38609559742522	7.51557845169222	-0.275931989057243	0.151439354543144	0.435087863452127
Merged-chr6-98234316-2	chr6	98234216	98234416	+	888.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108438.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	3.43918089090442	3.42839826801884	3.43960284256933	3.77751150471249	3.53506002582157	3.61425894820794	3.59475668619543	3.93188135474181	0.40447407197469	0.430054941751014	0.720740306563559
Merged-chr1-52801854-4	chr1	52801700	52801900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008384, intron 1 of 5)	intron (NM_008384, intron 1 of 5)	15888.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	6.4542372190865	5.990990172273	6.64750017445526	6.40883970911409	6.7617341949276	6.48625387193865	6.67128655656727	6.70072263207756	0.394619470496207	0.0908790916675641	0.329396214777755
Merged-chr4-59823252-2	chr4	59823181	59823381	+	811.0	f0_balb.idr|f0_c57.idr	intron (NM_172468, intron 1 of 8)	L1MB2|LINE|L1	17631.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	3.68640819273079	3.90598226465101	3.79542554097725	4.09633271071955	3.73405651947251	3.966390017776	3.55827168699993	4.15202292948096	-0.0666708455605574	0.890588680035917	0.959063371352354
Merged-chr1-91346991-3	chr1	91346944	91347144	+	691.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033292, exon 9 of 9)	3' UTR (NM_001033292, exon 9 of 9)	-4029.0	NM_027551	70788.0	Mm.68617	NM_027551	ENSMUSG00000026308	Klhl30	4631423F02Rik	kelch-like 30	protein-coding	3.10647118295697	3.18697324135942	3.04733660424708	3.01330091825358	2.98491728338919	3.09361165951767	2.91062248769642	3.21642675995161	-0.134512687380089	0.814585380458978	0.92840582625946
Merged-chr15-66093673-4	chr15	66093578	66093778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152923, intron 1 of 14)	C-rich|Low_complexity|Low_complexity	-116874.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	5.5613763192053	5.62005016857402	5.20632083383048	5.70916713349141	5.47247577760832	5.16456536204082	5.48186425894266	5.45058756295397	-0.257309414206909	0.37773811598307	0.680424390889998
Merged-chr7-80029938-6	chr7	80029828	80030028	+	851.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	3700.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	4.83325913651381	4.76271482309829	5.15467723504937	5.57167323071662	4.59459169780526	4.84482737918191	5.27638613657941	5.57445461018068	-0.0160164103933385	0.968826156231852	0.988804291176557
Merged-chr2-163516650-4	chr2	163516536	163516736	+	917.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312906, intron 1 of 10)	intron (NM_001312906, intron 1 of 10)	9779.0	NM_001312907	15378.0	Mm.202383	NM_008261	ENSMUSG00000017950	Hnf4a	HNF-4|Hnf4|Hnf4alpha|MODY1|Nr2a1|TCF-14|Tcf14	hepatic nuclear factor 4, alpha	protein-coding	4.83702444191657	4.7635446323409	4.54306597218641	4.58044234974304	4.53728092112089	4.44537225923888	4.39344591202785	4.76765303432515	-0.300471201838136	0.406149356939539	0.70272260087993
Merged-chr2-164858327-4	chr2	164858217	164858417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011125)	promoter-TSS (NM_011125)	-609.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	5.8574155667496	5.64401177925874	5.68992064575442	6.25009638781088	5.68473938883095	5.48265558174203	5.60894239416617	5.80841878635913	-0.412332804256417	0.15116371497146	0.434488857533257
Merged-chr14-41033550-4	chr14	41033440	41033640	+	680.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19707.0	NM_001316737	70564.0	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	3.53371484694511	3.35848240649118	3.53418861766515	3.67063006661073	3.70262642520648	3.65035280388701	3.85441236909027	3.22244548132594	0.298632832708872	0.56942912220674	0.809366519988776
Merged-chr3-51326967-4	chr3	51326834	51327034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	MTC|LTR|ERVL-MaLR	13710.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	6.32367017746722	6.29746139387739	6.62520028502556	6.69349091230184	6.45666957994447	6.53822646530233	6.17460759450723	6.47933455004111	-0.130173980145118	0.575882779655143	0.813239378859725
Merged-chr16-18876595-4	chr16	18876501	18876701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010922)	promoter-TSS (NM_010922)	36.0	NM_010922	18100.0	Mm.20918	NM_010922	ENSMUSG00000022706	Mrpl40	Nlvcf	mitochondrial ribosomal protein L40	protein-coding	8.36060501683884	8.0525144129986	8.12491737363796	8.25761529867887	7.99546684922084	7.92869727525405	8.1817788946198	7.80305256724076	-0.281705990436078	0.1009488543865	0.348744146510806
Merged-chr3-152932255-4	chr3	152932145	152932345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	49962.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	5.08706433599376	4.59495517385925	5.440733017942	5.66238719433125	5.52473277660439	4.79803087457821	5.93025402627704	5.88078068805452	0.606117926401461	0.32615735032508	0.637702349643975
Merged-chr4-16087834-2	chr4	16087734	16087934	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73946.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	2.6267469914023	2.53643894770652	2.62708822447942	2.31285269993206	2.35673512760206	2.60078984120387	2.55370686381628	2.7455523199943	0.230481899328406	0.744160140330615	0.89923574268619
Merged-chr5-25760032-4	chr5	25759957	25760157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310504)	promoter-TSS (NM_001310504)	84.0	NM_001004365	242894.0	Mm.150319	NM_001004365	ENSMUSG00000056367	Actr3b	9630005C02|ARP11|AW047569|Arp3b|Arp3beta	ARP3 actin-related protein 3B	protein-coding	5.85695053834984	6.3585365827981	6.71442167070069	6.0407374005452	5.87710220560773	6.32905215827675	6.05946667657374	6.22696065395446	-0.228711006922902	0.417706758059155	0.711430250427875
Merged-chr19-32249932-4	chr19	32249764	32249964	+	970.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 3 of 9)	intron (NM_144792, intron 3 of 9)	-38851.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	4.64602616081575	4.4463445879683	4.6841237506171	4.83623722999064	4.27461150056958	4.42935684542176	4.42223251820364	4.91212077132299	-0.314268452824909	0.419341509919998	0.712506190551789
Merged-chr6-140624209-4	chr6	140624135	140624335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309437)	promoter-TSS (NM_001309437)	-674.0	NM_001309437	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	4.92292622459357	5.06486977773724	4.99706438139588	4.92824026439797	4.975513510955	5.27329203002539	5.16902052098252	5.43911092328051	0.454616326983456	0.142749037376872	0.420577579016035
Merged-chr15-77306875-5	chr15	77306750	77306950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001110827, exon 1 of 14)	5' UTR (NM_001110827, exon 1 of 14)	203.0	NM_001110827	93686.0	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	5.8050753895972	5.68823024707935	5.64019639574594	5.73416811623742	5.37977522558811	5.21918743794448	5.36205402409671	5.77958021203988	-0.456164979117951	0.103193402142284	0.352873128956895
Merged-chr14-75790551-4	chr14	75790449	75790649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-3512.0	NM_026232	67554.0	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	5.98870554214193	5.68564923595728	6.01061564483374	6.18599677879054	5.68651358380151	5.30719233829027	6.13424004911103	5.89850598611704	-0.314220883800925	0.283886772840176	0.595964625847664
Merged-chr2-28537126-2	chr2	28537026	28537226	+	842.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 1 of 17)	B1_Mus1|SINE|Alu	3662.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	3.8134732654295	4.15693421539563	3.414197182366	3.50054493157016	3.97804771031867	3.65860917850477	3.69661095937934	3.70952237147513	0.0574834927404941	0.911905764822827	0.967058605013842
Merged-chr5-36582001-4	chr5	36581908	36582108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	CpG	389.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	9.06193271180774	9.10831211737429	9.04637152575023	8.73617534323045	8.99945777096062	9.14332852191905	9.17491286370533	8.87694145431118	0.0765616193673718	0.635968123138031	0.845986164419408
Merged-chr17-5605582-4	chr17	5605494	5605694	+	989.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	112994.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	5.04999664846209	4.88254720104299	4.91213193400009	5.12567251542085	4.76464267643922	5.19018232336602	5.02622585705336	5.04740548970389	-0.00198606949574095	0.995087985882884	0.998229409444828
Merged-chr3-103587522-4	chr3	103587419	103587619	+	877.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001276681, exon 3 of 8)	exon (NM_001276681, exon 3 of 8)	11393.0	NM_001276681	54524.0	Mm.88818	NM_018800	ENSMUSG00000027849	Syt6	3110037A08Rik|AW048930|sytVI	synaptotagmin VI	protein-coding	3.45036213632088	3.76097978342779	4.05201438698027	4.34721197237658	3.97962728687654	3.7617718911919	3.74366265220452	4.00504921371981	-0.218457985906246	0.675283564932864	0.866647594179011
Merged-chr1-167212503-3	chr1	167212399	167212599	+	867.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72628.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	3.51532348177649	3.52805328576199	3.45947891896697	3.41854723676589	3.75522145763096	3.5740655751407	3.50222831665249	3.56775338154973	0.434365344425838	0.367323649132048	0.671762463264211
Merged-chr5-33018748-4	chr5	33018653	33018853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011738)	promoter-TSS (NM_011738)	-63.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	8.27352791208028	8.54541486599176	8.2748700387899	8.13905720747846	8.28832236770821	8.67772845025553	8.21293790502645	8.25213587080594	0.069932496920702	0.702854701247564	0.880424292242087
Merged-chr15-64279396-3	chr15	64279319	64279519	+	837.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	33254.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	3.31181045564324	3.04105939680883	3.20576967790827	3.23554802271801	2.98930065787704	3.00049380149501	2.95283407556605	3.25829658241177	-0.595082369046108	0.303079493270142	0.615612112304183
Merged-chr10-37386398-4	chr10	37386294	37386494	+	875.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-247468.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	4.40433630997276	4.18075473663387	4.09506502422312	4.25919565035034	4.36062100365531	4.05817108985272	4.34508058695109	4.23459144348788	0.0523113099837547	0.894922651550131	0.960707328477291
Merged-chr15-65108781-3	chr15	65108674	65108874	+	884.8833619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186478.0	NM_009623	11514.0	Mm.1425	NM_009623	ENSMUSG00000022376	Adcy8	AC8|AW060868	adenylate cyclase 8	protein-coding	3.83738699083588	3.5031212706298	3.74519760502107	4.30147389318714	3.28457056112482	3.53565286866484	3.20955381574299	3.14486435967512	-2.00483705360421	0.000655052138606793	0.00957215277640996
Merged-chr11-70653325-4	chr11	70653215	70653415	+	958.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011072, intron 1 of 2)	G-rich|Low_complexity|Low_complexity	1335.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	4.52252511189981	4.83072764469768	4.52323101048597	4.16731599381486	4.90633302579519	4.94222199903684	4.94985883290947	5.00237230216038	0.912665961676724	0.0115798569199137	0.0876201377381244
Merged-chr8-68203572-4	chr8	68203464	68203664	+	665.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72964.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	3.77444444665697	3.7894102180922	3.82293100093171	3.71453631121098	3.80508793604622	3.73660299826039	3.60531815829048	3.23786668657688	-0.467765742057477	0.353852247482945	0.660673323809473
Merged-chr8-83662522-4	chr8	83662433	83662633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018771, intron 4 of 6)	intron (NM_018771, intron 4 of 6)	-4111.0	NM_013641	19216.0	Mm.213000	NM_013641	ENSMUSG00000019464	Ptger1	EP1|Ptgerep1	prostaglandin E receptor 1 (subtype EP1)	protein-coding	5.29521889778695	5.86659753518937	5.19148144655771	5.0986673818063	5.98476084847966	6.00887456848968	5.84851810297405	5.41996382910909	0.744087685817365	0.0207540306699003	0.131287873182797
Merged-chr11-100938331-4	chr11	100938236	100938436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_213660, intron 1 of 23)	intron (NM_213660, intron 1 of 23)	1204.0	NM_213660	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	5.66487799751687	5.55905993462555	5.47082639363313	5.6142134497948	6.13262570875142	6.00832692070147	5.71189480015498	5.4054454758948	0.450917995683216	0.114255978551971	0.373859772452381
Merged-chr17-28260095-4	chr17	28259989	28260189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	-11619.0	NR_045427	69050.0	Mm.486938	NR_045427	ENSMUSG00000002250	1810013A23Rik	-	RIKEN cDNA 1810013A23 gene	ncRNA	7.58042618373125	7.73055675106287	7.83184545595537	7.76126548325176	7.69491624035552	7.65665397553119	7.63056879992801	7.50313156028329	-0.138674909971134	0.41085756714756	0.706267799454107
Merged-chr5-36748675-4	chr5	36748571	36748771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133724)	promoter-TSS (NM_133724)	8.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	6.47463774398227	6.77000336891391	5.89416932408593	6.48165285128524	6.72458791492137	7.00981556557156	6.57328550636273	6.69251790950501	0.445323539471716	0.0809843553973402	0.308756755250728
Merged-chr1-167394287-5	chr1	167394174	167394374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025569)	promoter-TSS (NM_025569)	-477.0	NM_025569	66447.0	Mm.218286	NM_025569	ENSMUSG00000026688	Mgst3	2010012L10Rik|2010306B17Rik|2700004G04Rik|AA516734|GST-III	microsomal glutathione S-transferase 3	protein-coding	5.52915543819533	5.61507832928299	6.08972565339067	5.7135591750442	5.4288766436988	5.67801815243699	5.18676698664237	5.80336316573503	-0.354998775159986	0.235693470479499	0.545663379778285
Merged-chr4-115709994-4	chr4	115709912	115710112	+	800.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28061.0	NM_172698	230648.0	Mm.283565	NM_172698	ENSMUSG00000034210	Efcab14	4732418C07Rik	EF-hand calcium binding domain 14	protein-coding	3.7616675210998	3.90172711749404	3.40728605118652	3.19314704307095	3.86581623894681	3.93561852042085	3.98005076210451	3.85974121918037	0.956118420343586	0.0620119422659254	0.263424924716299
Merged-chr14-54222573-3	chr14	54222468	54222668	+	777.6777950000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31361.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	3.22536498543981	3.18883135311275	3.22574314391379	2.71993848017509	4.280171106517	4.53086280697372	3.8686699661892	3.88497789972764	3.77486081773896	5.96639459045808e-11	4.7344704632577e-09
Merged-chr10-77253011-3	chr10	77252911	77253111	+	965.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6212.0	NR_026944	100169878.0	Mm.420901	NR_026944	ENSMUSG00000078444	Gm10941	-	predicted gene 10941	ncRNA	4.14122531276088	4.11790751624873	3.84991122242252	4.10281047500138	3.96499807873813	4.17505951598444	3.93842146463415	3.90117286538274	-0.17726351331682	0.675945442371631	0.867014726144001
Merged-chr15-51952590-4	chr15	51952480	51952680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	39180.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	6.56719075130774	6.67122665558792	6.56834898364839	6.84318768466842	7.14122505483927	7.0746298586418	6.97618464878113	7.11057031715555	0.5531140803186	0.00556434304898466	0.0513835461706901
Merged-chr13-74809232-3	chr13	74809125	74809325	+	607.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301153)	promoter-TSS (NM_001301153)	-465.0	NM_001301153	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	3.26770156120548	3.10671692642212	3.26811710106629	3.5575541909996	3.48024194060781	3.05124057863497	3.13763202680588	3.37612807653779	-0.148926542448092	0.798239351201614	0.921955533143952
Merged-chr7-139208199-4	chr7	139208108	139208308	+	961.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162540, intron 1 of 11)	intron (NM_001162540, intron 1 of 11)	-4780.0	NM_027164	76612.0	Mm.17757	NM_027164	ENSMUSG00000015980	Lrrc27	1700071K18Rik|2310044E02Rik	leucine rich repeat containing 27	protein-coding	4.72928578658091	4.69224653438401	4.56374350774385	4.7777931520403	4.96888389615321	4.90360762424503	4.78299055285822	4.9739702125194	0.430754008299694	0.188890914139504	0.487687851483034
Merged-chr17-34632545-4	chr17	34632454	34632654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030890)	TTS (NM_030890)	2868.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	8.01657679281059	7.85639204735405	7.64071441676851	7.56380990966827	7.36300319418939	8.08871267240377	7.81644204446619	7.53675449073561	-0.0682941918797946	0.754596974426492	0.903381627467426
Merged-chr5-31494706-4	chr5	31494653	31494853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133756)	promoter-TSS (NM_133756)	12.0	NM_133756	74254.0	Mm.348649	NM_133756	ENSMUSG00000064037	Gpn1	2410004J02Rik|AI449615|MBDIN|NTPBP|Xab1	GPN-loop GTPase 1	protein-coding	6.44732754134834	7.08075753494157	6.69559210232751	6.80025621245762	6.6426317972808	6.74684958488173	6.89200022098744	6.38810811648489	-0.145964973280933	0.534617512610684	0.789286995820758
Merged-chr4-151073594-4	chr4	151073545	151073745	+	876.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 22 of 23)	intron (NM_001081557, intron 22 of 23)	-15692.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	4.17990984883906	4.1809070118359	3.89948606671345	4.03219174466908	4.20937493325943	3.96661531393157	3.83107022003232	3.84394566574023	-0.249885016840448	0.568324112561639	0.808650514903046
Merged-chr2-90501030-2	chr2	90500930	90501130	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	ORR1C2|LTR|ERVL-MaLR	-21856.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.2750688694243	3.19610292460105	2.89370751532972	2.6736411157856	3.02810160298865	3.49979533920158	3.20594609655945	3.32769754098825	0.949030608126716	0.129224290527215	0.40006775601936
Merged-chr10-89584842-2	chr10	89584724	89584924	+	884.625	f0_c57.idr|f1_c57bl6.idr	intron (NM_001310710, intron 7 of 9)	intron (NM_001310710, intron 7 of 9)	14991.0	NM_001310710	216227.0	Mm.233921	NM_182959	ENSMUSG00000019935	Slc17a8	BC042593|Vglut3	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8	protein-coding	3.06814318575379	2.98250032314394	3.06845992574651	3.00386016151779	4.11954226297922	3.77451032950758	4.33474887837367	3.5929868243573	3.23182577032348	6.27893760037864e-08	2.80910433348429e-06
Merged-chr4-134653072-4	chr4	134652957	134653157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 1 of 11)	L2b|LINE|L2	51233.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	5.77256113801212	5.64672166929811	5.67629513512761	5.92345547909952	5.45482051405905	5.3344859778554	5.56989659595592	5.90241852688366	-0.316423780604554	0.257941161943119	0.569755868563229
Merged-chr6-53566939-4	chr6	53566801	53567001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-6473.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	5.05144040151305	5.05148557951982	4.9828408179306	4.70978383792557	5.24080033791775	5.32225821812419	5.24276848264053	4.94334634900664	0.492863315788029	0.119978930514486	0.38344891804151
Merged-chr9-40806573-4	chr9	40806485	40806685	+	774.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5312.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	3.73188798385736	3.59406534643336	3.6218177554223	3.60987047285015	4.15417183698627	3.90438776867886	3.76868475041742	3.78217544125666	0.831851245317255	0.0677785804634832	0.277838185299054
Merged-chr15-88514487-5	chr15	88514417	88514617	+	822.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85785.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	4.45436841266204	3.83364361174294	4.22198903934597	3.88252903272323	3.82738561925316	4.0053998017561	4.36101403787769	4.03619425957141	-0.114458894381877	0.804831346604244	0.925074530010229
Merged-chr19-46039656-4	chr19	46039573	46039773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010697)	promoter-TSS (NM_010697)	-52.0	NM_010697	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	6.61110729069255	6.50229022410474	6.62753758953222	6.5300210216083	6.33901419565263	6.45788941358677	6.57853231437655	6.72468511905634	-0.056232057701346	0.792930345077472	0.919802301661795
Merged-chr2-58489738-4	chr2	58489633	58489833	+	836.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355048, intron 3 of 10)	intron (NM_001355048, intron 3 of 10)	71677.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	4.25622253908859	3.95999384477619	3.92249721205063	4.37342903955874	4.23818505118733	3.80446642211874	4.19529416526017	4.33542096784877	0.0192570582265258	0.965426092001269	0.987769412779284
Merged-chr17-17454828-4	chr17	17454761	17454961	+	990.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025681, intron 5 of 5)	intron (NM_025681, intron 5 of 5)	52175.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	5.59562759796512	5.74020944307515	5.24458185506384	5.15931646477874	5.17832779352714	4.89615407588722	5.27910479592257	5.00150449735883	-0.633485015791502	0.0527680155847089	0.239542251496916
Merged-chr1-105801384-4	chr1	105801287	105801487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	20664.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	5.72283406036011	5.65195332399959	5.7238356967596	6.1688368747078	5.61758844783366	5.89902303840233	5.47666047940307	5.92839962818549	-0.189199782800517	0.510110876797018	0.774513270041275
Merged-chr6-97210695-4	chr6	97210586	97210786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022992)	promoter-TSS (NM_022992)	-106.0	NM_022992	65106.0	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	6.56596205100951	6.80282341843768	6.89001997081199	6.32416925146441	6.91810707545762	6.88593125544014	6.85505923648502	6.80503173484976	0.312120905391254	0.159792461431402	0.447508168564124
Merged-chr2-128243878-3	chr2	128243784	128243984	+	845.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	116309.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	4.00308221388936	4.20488223490332	3.91264824046632	4.04788166713624	3.75901992004228	3.44288636381856	3.38859318653298	3.76042319581523	-1.31441809917702	0.00822387237247401	0.0684159667602066
Merged-chr4-123928160-4	chr4	123928063	123928263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017475, intron 5 of 6)	intron (NM_017475, intron 5 of 6)	10730.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	7.63267466577454	7.90914353775411	7.72767818381573	8.08486591299401	8.03982816366385	7.68133800711569	7.8219985365749	7.90530395514922	0.0161383151597134	0.931381832491809	0.975279137937273
Merged-chr12-100527906-2	chr12	100527806	100528006	+	796.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7084.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	3.12995660265931	3.37175171710673	3.13036293479101	3.15986489854307	2.89748261777801	3.24146712081266	2.99800867938293	2.8720464849659	-0.807033626479288	0.174284762490949	0.468624021960685
Merged-chr1-95590283-4	chr1	95590178	95590378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009183, exon 5 of 5)	3' UTR (NM_009183, exon 5 of 5)	77316.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	7.08192016690891	7.41086635719272	6.97879757716583	7.45406994455394	7.39259152500942	7.57889139869114	7.27501593457797	7.52583791488519	0.247653481380338	0.222835068912808	0.530983202865467
Merged-chr2-43545875-4	chr2	43545784	43545984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR25C|LTR|ERVK	-9441.0	NM_001289593	70789.0	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	5.95372190986637	5.22718803776985	5.6506084727024	6.23690881913041	5.53200187478619	5.5348888658891	5.4833541589294	6.16015406711997	-0.202518387300355	0.555377330523736	0.801534192306725
Merged-chr10-78413016-4	chr10	78412914	78413114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010925)	promoter-TSS (NM_010925)	29.0	NM_010925	18114.0	Mm.38344	NM_010925	ENSMUSG00000061032	Rrp1	AL033305|AL033306|AU018604|NNP-1|Nnp1	ribosomal RNA processing 1 homolog (S. cerevisiae)	protein-coding	7.40967735831075	7.62738104372856	7.23412854391054	7.3435012018198	7.58795637564637	7.46594669730857	7.081395943484	7.21785920221398	-0.0690132558541691	0.735380256637175	0.895556115614838
Merged-chr14-46994973-4	chr14	46994872	46995072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-6368.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	6.41890844929565	6.23305173827288	6.28237017977416	6.71235308970904	5.76327385280886	6.03199652425575	5.92104464266967	5.99353279414465	-0.797738715696752	0.0013624432344049	0.0172936826729155
Merged-chr15-59530848-4	chr15	59530741	59530941	+	963.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-117813.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	4.64967584869519	4.97485861460609	4.65040311421145	4.82935496669463	5.5233591404689	4.99332638850899	5.16182443144297	4.92596655469933	0.770305431744661	0.0242187430180085	0.145369909364695
Merged-chr17-35749414-4	chr17	35749248	35749448	+	920.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-23102.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	3.4528568443688	3.27604360339574	3.38514210266181	3.0944896386286	4.20161780623534	4.12381027580698	3.93175551152808	4.30625478345413	2.68198988559355	2.17838106868629e-08	1.08307518733934e-06
Merged-chr11-61410357-2	chr11	61410257	61410457	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-32282.0	NM_026183	67473.0	Mm.100741	NM_026183	ENSMUSG00000010122	Slc47a1	1300013J15Rik|AI036982|MATE1|mMATE1	solute carrier family 47, member 1	protein-coding	3.33525751591724	3.11483474108719	3.15718764942278	3.1666025279642	3.49337150376949	3.33131375337484	3.32271088870374	3.44029457119385	0.76130181005792	0.143974490200999	0.422642851071835
Merged-chr13-80962987-4	chr13	80962902	80963102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1072.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	7.59046470667096	7.36245634708632	8.16043767070178	7.87882618644255	7.65365770802181	7.58582605745466	8.00846111896544	7.77034288033062	-0.025961832097985	0.906195303880299	0.965224247072933
Merged-chr15-79891632-4	chr15	79891542	79891742	+	929.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160415)	promoter-TSS (NM_001160415)	-766.0	NM_001160415	80287.0	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Gm20117|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	5.01655727287391	4.7025364221584	4.30590662897989	4.39791654821611	4.77156966996819	4.4852816108266	4.42811843628861	4.65186937014728	-0.062057286674575	0.874847054500291	0.952967961745167
Merged-chr15-8224439-3	chr15	8224340	8224540	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162906, intron 31 of 52)	MTD|LTR|ERVL-MaLR	55334.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	4.57484661584594	3.77525959908179	4.76401016446461	4.6657495488799	3.65944124130725	3.80245523295644	4.20530496762435	3.74169878691154	-1.6282553467023	0.00144016441448049	0.0180442638370545
Merged-chr13-95489123-1	chr13	95489023	95489223	+	623.0	f0_c57.idr	Intergenic	L4_B_Mam|LINE|RTE-X	-10468.0	NM_001081159	268686.0	Mm.291249	NM_001081159	ENSMUSG00000021679	S100z	Gm625	S100 calcium binding protein, zeta	protein-coding	2.17390457206096	2.13137410227131	2.25836440591192	1.91582875505425	2.91779623682068	2.79447891986375	2.66853399135458	2.73787271602429	6.04845411121613	2.61122109194925e-09	1.5553481682331e-07
Merged-chr10-128186107-4	chr10	128186019	128186219	+	825.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5822.0	NM_001039080	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	4.1433603157801	3.95856743993875	3.5574320139139	3.54234816646736	3.58049068509568	3.67727360165679	4.26987035684471	3.42677389387932	-0.120613078285735	0.826295673640912	0.93341395042234
Merged-chr3-103874517-3	chr3	103874413	103874613	+	828.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104070, intron 6 of 22)	intron (NR_104070, intron 6 of 22)	14236.0	NM_008979	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	3.79689935894151	3.92206466801287	3.68259597342646	4.14583724712664	3.89258378915022	4.34227171659808	3.88687384517544	3.90078649665309	0.27427594140714	0.557670362593671	0.802816324871987
Merged-chr7-100182589-4	chr7	100182488	100182688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190869, intron 3 of 4)	intron (NM_001190869, intron 3 of 4)	3905.0	NM_001190871	57442.0	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	5.49445696961277	5.42659645452207	5.22577135119412	5.57872756943254	5.65104112276732	5.1496718092044	5.29588359381417	5.59499552068169	0.00487323505850587	0.986920994651257	0.995239569128295
Merged-chr5-36696732-4	chr5	36696629	36696829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081232)	promoter-TSS (NM_001081232)	-708.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	5.7853996734492	5.44903905597245	5.36912521776775	5.57741219552972	5.57693846852441	5.54532195002429	5.71199508761752	5.23566724048478	-0.0404655012747759	0.886881308615986	0.957513044740158
Merged-chr17-72834797-4	chr17	72834736	72834936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1792.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	5.05726880531806	4.73555510598564	5.21277014148572	5.18944561998838	4.84842358642636	5.01981153780407	4.78171744280561	5.26594479780608	-0.154265482191007	0.647160233213214	0.851605116430591
Merged-chr11-70594399-4	chr11	70594289	70594489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	intron (NM_016713, intron 1 of 30)	-21505.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	5.9374480884388	5.97514708038084	5.47900145683622	5.44527359170766	6.02110911609179	6.00122639505952	5.81996971585991	5.62014510200872	0.257368741515645	0.366857766022445	0.671222500262489
Merged-chr11-54093270-4	chr11	54093196	54093396	+	871.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7628.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	3.57545523434836	3.79973272536867	3.73656946274161	3.66975458221924	3.81461634229	3.6323974966175	3.8168489090139	3.57407322330103	0.0670889881164491	0.885329397826339	0.956984644600969
Merged-chr3-136253035-4	chr3	136252943	136253143	+	991.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 3 of 16)	intron (NM_001033350, intron 3 of 16)	73023.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	5.5242028703382	5.29193697881456	5.67478628690476	5.47719001083262	5.04285188481337	5.50029194195674	5.57378627188537	5.38150473955786	-0.205934290619798	0.489844699172792	0.761966459176932
Merged-chr16-4939086-4	chr16	4938978	4939178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025839)	promoter-TSS (NM_025839)	-33.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	6.60292083224391	6.80649660235976	6.50713585395574	6.32076205053285	6.61578072473136	6.63233145689398	6.70243866722847	6.36051841163163	0.0348028492817665	0.878374688552071	0.954531785594624
Merged-chr1-53297119-4	chr1	53297050	53297250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153556)	promoter-TSS (NM_153556)	55.0	NM_145517	227102.0	Mm.212846	NM_145517	ENSMUSG00000026097	Ormdl1	C730042F17Rik	ORM1-like 1 (S. cerevisiae)	protein-coding	8.47958460608188	8.42526514443657	8.40502212900905	8.72927296266374	8.2575925510773	8.29654080577451	8.31814749570821	8.3187398608193	-0.287929044445033	0.0702703788102794	0.283901424301105
Merged-chr11-82101672-4	chr11	82101574	82101774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011331)	promoter-TSS (NM_011331)	-171.0	NM_011331	20293.0	Mm.867	NM_011331	ENSMUSG00000035352	Ccl12	MCP-5|Scya12	chemokine (C-C motif) ligand 12	protein-coding	6.59417494825572	7.16798355539696	6.64283120520517	6.39245225060373	6.6640796601274	6.90893625137424	6.72688636699124	6.41815140523547	-0.0550121957557491	0.828412214222012	0.934169961374777
Merged-chr9-56114077-4	chr9	56113991	56114191	+	984.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	24115.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	4.61422508672612	4.65136041217198	4.53154809344818	4.69767755791797	4.47858907826696	4.82705695962663	4.67122175095564	4.83349600486517	0.147290461596982	0.673464498556033	0.865743878067327
Merged-chr7-133032714-4	chr7	133032612	133032812	+	860.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	-17465.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	4.07927800864917	3.95844355432449	3.76346039219596	4.03653628263864	4.37283661129536	3.8837916194854	4.27460288150433	4.16762801177218	0.583880156537976	0.17375765865923	0.467931458730482
Merged-chr8-61621470-3	chr8	61621386	61621586	+	991.761902	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-30317.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	4.60382065193283	4.38998069898916	4.57113448927758	4.48746780912718	3.54109154307767	4.15569106578433	3.78880957163034	3.60526001026515	-1.99826775568784	2.15003673619193e-05	0.000543263985961679
Merged-chr4-31964568-1	chr4	31964468	31964668	+	541.0	f0_c57.idr	intron (NM_009316, intron 1 of 16)	intron (NM_009316, intron 1 of 16)	461.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	3.20934531650008	3.03940665867093	2.83746146285299	2.81457545512416	3.16427201526642	3.26707514253992	3.02587568322819	3.0954088090208	0.668996862422618	0.253764857735477	0.565032649092237
Merged-chr1-182517546-4	chr1	182517440	182517640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009794)	promoter-TSS (NM_009794)	70.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	5.88276701774144	6.15459430729551	6.06010599425224	6.10713797077942	6.06433096355064	5.88416698044335	6.00853688381	5.75565420954914	-0.189109697418307	0.437179471459772	0.725557644444268
Merged-chr3-101596344-4	chr3	101596258	101596458	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	8349.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	5.4036982761982	5.53331328801417	5.46624716277344	6.04667132477011	6.01878161976324	5.34511380564679	5.73122422407128	5.93404257758773	0.211203656470958	0.505255512248472	0.771386515085882
Merged-chr15-25553231-4	chr15	25553114	25553314	+	938.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69336.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	5.45616064595903	5.52653362706314	5.74140231283885	5.05497278132827	5.30696446826092	5.11865720796609	5.09906715247923	4.97439752852356	-0.572846824957122	0.0803670890057562	0.307304416719761
Merged-chr17-13760283-4	chr17	13760203	13760403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010806)	promoter-TSS (NM_010806)	-238.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	5.6967607360857	5.91280477494593	5.69775293119171	5.93281313191989	5.68995153407387	5.87370638024757	5.98891175580564	5.8874666006721	0.0482356134820503	0.849388970476524	0.943120119372541
Merged-chr4-87653619-4	chr4	87653495	87653695	+	953.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	152728.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	5.23604688106419	4.85003375613268	5.26637745584262	5.64676868230635	5.1023914500812	4.77770867684706	4.9124625858438	5.1723665082793	-0.55023261753508	0.11521323023041	0.37550998280921
Merged-chr2-120353085-4	chr2	120352978	120353178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027618)	promoter-TSS (NR_027618)	55.0	NR_027618	269338.0	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	6.79138218695905	7.02778730839397	6.33064798874167	6.86344874443762	6.91925129553086	6.52884095150772	6.61237577785799	6.52803612271638	-0.168067122543285	0.483432272654954	0.757810293808838
Merged-chr15-99018270-3	chr15	99018182	99018382	+	725.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11609.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	2.87152038853258	2.9269402669522	2.931953500277	3.00051960712216	2.54871401989557	2.54340742320498	2.86155620799751	3.09492563424219	-0.699978005942176	0.311077681510558	0.623144634346663
Merged-chr13-99175319-3	chr13	99175209	99175409	+	821.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9514.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	3.71336215805528	3.91758814777362	3.86930689619666	4.16763674430659	3.58713195782071	3.58925939727439	3.64393154244264	4.08970798179412	-0.568549188511895	0.246833578776933	0.558094320503266
Merged-chr19-41981381-4	chr19	41981259	41981459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145500)	promoter-TSS (NM_145500)	-223.0	NM_028152	72199.0	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding	8.63926510793393	8.74426607905356	8.786631877584	8.33942195663855	8.83460519606182	9.05092664847567	8.85158549332562	8.82877062775402	0.326446396858661	0.0508705523451221	0.233928880236285
Merged-chr9-51008036-2	chr9	51007936	51008136	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 1 of 15)	intron (NM_178710, intron 1 of 15)	1037.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	3.41046515218848	3.06143632578739	3.16542857857372	2.91609686352859	3.03028918676016	3.83403673724374	3.28076688498236	3.83417173604965	1.35708992853869	0.0259676683503603	0.15235418876153
Merged-chr19-55714114-4	chr19	55713984	55714184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11880.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	7.2066240346866	7.4374599317141	7.08161009766575	7.08455103511312	7.05099169732234	7.28218716152315	7.17178921525474	6.90995985624778	-0.137405678070863	0.491939435913673	0.763262787218927
Merged-chr1-165679829-3	chr1	165679681	165679881	+	786.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	28313.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	3.49581215232367	3.69920080650868	3.44504046508466	2.93847752111738	3.36258449545941	3.39295084285424	2.93382175509759	3.08459901847475	-0.766870893501554	0.225205744627987	0.533565878802898
Merged-chr2-48814002-6	chr2	48813890	48814090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007396)	promoter-TSS (NM_007396)	-119.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	6.31445188974906	6.42455854088184	6.42380374764864	6.17483241213551	6.43298760548519	6.69754764423048	6.66701149145286	6.23379110392705	0.280391759980021	0.222323476354081	0.530338239331315
Merged-chr3-78919674-4	chr3	78919581	78919781	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	225206.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	5.2857065155326	4.90392933591535	4.89044035831392	5.19173189353095	5.33550799894116	5.02854772081137	5.20269680774149	4.99826786881547	0.135410275228879	0.67069661398389	0.864214400064935
Merged-chr7-16175351-4	chr7	16175266	16175466	+	987.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302472)	promoter-TSS (NM_001302472)	-29.0	NM_001277988	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	5.27364400754673	5.10541236482916	4.76950918778798	5.02211717591607	4.97832577039765	4.98682412521052	4.93723728309802	5.12400632127235	-0.089288221655772	0.778945370596298	0.913809930096951
Merged-chr13-23683524-2	chr13	23683424	23683624	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290380)	promoter-TSS (NM_001290380)	435.0	NM_178189	319164.0	Mm.261973	NM_178189	ENSMUSG00000069270	Hist1h2ac	-	histone cluster 1, H2ac	protein-coding	4.36957867437372	4.51952575316461	4.13610334432543	3.69342055935798	4.64334813799694	4.21180140101319	4.11843004109423	4.82856911781502	0.644983652272215	0.167748364719224	0.459695448875569
Merged-chr17-35331568-3	chr17	35331487	35331687	+	895.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-10746.0	NM_010392	15013.0	Mm.427969	NM_010392	ENSMUSG00000091705	H2-Q2	BE136769|Gm11132|H-2Q2|gs14-2	histocompatibility 2, Q region locus 2	protein-coding	5.01623702337235	4.59017837805278	4.64333124450421	4.9424092401901	3.25125733479734	3.45787849865457	3.40077835200168	3.63568669551107	-4.87909068814136	2.38053078050216e-11	2.02200239171078e-09
Merged-chr4-85005776-4	chr4	85005683	85005883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175275, intron 11 of 25)	intron (NM_175275, intron 11 of 25)	121474.0	NM_177385	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	5.48288876329609	5.20285982361809	5.71982610540352	5.90512178377077	5.36967577521743	5.4434825716485	5.80414842705696	5.78544832351719	-0.0135994596002496	0.965069983595012	0.987683902619634
Merged-chr11-115164051-6	chr11	115163925	115164125	+	929.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012030, intron 1 of 5)	CpG	684.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	4.35333774435599	4.09238165623189	4.26671030324727	4.02161993771923	4.52115039082195	4.14352995594074	4.3752219721317	4.5460479409602	0.571795770039542	0.148415063274411	0.430131750358685
Merged-chr1-168431565-4	chr1	168431518	168431718	+	764.720825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291509, exon 1 of 7)	5' UTR (NM_001291509, exon 1 of 7)	551.0	NM_001291509	18514.0	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	4.13222309269687	3.56093917841259	4.00189942560274	3.50804355807581	4.04299114019159	4.12644293574334	3.73376663742857	3.90408029363271	0.404883325276922	0.407975005037956	0.704101371956373
Merged-chr13-46929499-3	chr13	46929382	46929582	+	742.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010617, intron 1 of 37)	CpG	236.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	3.97335747303033	3.48047690759456	4.60105956988924	3.74879720542975	3.60518078980561	3.60663409685606	3.59670630695072	3.48424620317276	-1.28748116471361	0.0205889684365152	0.130545357593329
Merged-chr7-18840224-2	chr7	18840124	18840324	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153760, intron 1 of 4)	RMER10B|LTR|ERVL	258.0	NM_153760	243864.0	Mm.233503	NM_153760	ENSMUSG00000040987	Mill2	Micb	MHC I like leukocyte 2	protein-coding	2.73167993458381	2.5859271564245	2.59196591094295	2.39205850755372	2.81756925525082	2.9700508931112	2.90579601275888	3.02664572954807	1.78484646816741	0.0060025179777185	0.0542406026578678
Merged-chr3-146564486-4	chr3	146564443	146564643	+	861.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32606.0	NM_009474	22262.0	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	3.82117554233723	4.3379999945254	3.87521371959487	4.24955541632227	4.05928665143384	3.9419107399296	3.85967393138424	3.70579417098364	-0.53471563168822	0.248734558646513	0.559973341869886
Merged-chr11-120086902-4	chr11	120086781	120086981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009734)	promoter-TSS (NM_009734)	-54.0	NM_009734	12009.0	Mm.2556	NM_009734	ENSMUSG00000039781	Cep131	AZ1|Azi|Azi1	centrosomal protein 131	protein-coding	8.47659087392944	8.54095507267491	8.39214553924557	8.04946489628083	8.37622075128593	8.3782158730445	8.4386578042492	8.10024935580991	-0.0518093355861134	0.775105280035347	0.91224145329603
Merged-chr16-35898229-3	chr16	35898136	35898336	+	861.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-26854.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	4.21645046309747	4.30953765531248	3.6386738136528	4.21937906966513	3.58829998510598	3.6300745339186	3.56417938663218	3.90944537060865	-1.29130790332688	0.00915233941565737	0.074062570175884
Merged-chr17-87636829-3	chr17	87636694	87636894	+	800.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008532, exon 2 of 10)	5' UTR (NM_008532, exon 2 of 10)	815.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	3.23939149128383	3.17122555863784	3.18305036015875	3.08549781108666	3.21448054737527	2.88513489804738	3.22717167905454	3.34432482820455	0.0581930795127007	0.91829461565071	0.9698969083482
Merged-chr13-91452476-1	chr13	91452376	91452576	+	634.0	f0_balb.idr	Intergenic	Intergenic	-8621.0	NM_024272	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	3.04765679667847	2.93604462292464	3.20639297105191	3.07503496816761	2.60154826255543	2.90837575692676	2.79236531683303	2.7997559710119	-1.38836741236899	0.0319443934088459	0.174542870841195
Merged-chr12-119356916-4	chr12	119356826	119357026	+	820.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86484.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	3.60764372793749	3.43104322793783	3.60812416266653	3.75142254363843	3.84036123014806	3.60846975285834	3.74712394364373	3.76080130146164	0.399794736695541	0.400353337985832	0.698175966397823
Merged-chr19-34421289-3	chr19	34421136	34421336	+	560.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53899.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	2.77331834733555	2.97906659283669	2.84395238572618	2.77599532060593	2.91571805434059	3.1468976100184	3.08094530275959	3.30010670036997	1.14205205603243	0.0543370496569099	0.243401941946456
Merged-chr1-152043664-3	chr1	152043569	152043769	+	899.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 1 of 5)	intron (NM_197990, intron 1 of 5)	46651.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	3.53997778399123	3.39845544008342	3.92415027476142	3.44279503873048	3.34510756779056	2.94142331446562	3.05465829739367	3.19820475484997	-1.6018356820597	0.00949310620709496	0.0760239877060134
Merged-chr4-89353355-1	chr4	89353255	89353455	+	921.0	f0_balb.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-42323.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	3.69249802372781	3.77074352160459	4.17558519646134	4.00770087848802	3.54959530649773	3.63953376725855	3.62426366091631	3.25359578768621	-1.24635787182569	0.0152848301689248	0.106266744148652
Merged-chr13-4191173-4	chr13	4191079	4191279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013778)	promoter-TSS (NM_013778)	-8.0	NM_013778	27384.0	Mm.27447	NM_013778	ENSMUSG00000021213	Akr1c13	mKIAA4014	aldo-keto reductase family 1, member C13	protein-coding	5.48584055264895	5.17873669040715	5.56723033399547	5.26351137692678	5.213398490259	5.57632854453418	5.77344989805612	5.68674824833893	0.343931292943226	0.250279067430226	0.561337715547518
Merged-chr9-67839548-2	chr9	67839457	67839657	+	660.5	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_177184)	promoter-TSS (NM_177184)	-839.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	3.62037056899985	3.71420315153043	4.16081119705566	3.56740893907425	3.68003550868083	3.55833730800608	3.29706097418814	3.91700593761812	-0.447350367510135	0.401179298941139	0.698869974053897
Merged-chr17-31305646-4	chr17	31305548	31305748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242427, intron 2 of 19)	intron (NM_001242427, intron 2 of 19)	9424.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	5.34856712434019	5.79276007410989	5.55094990299666	4.77138729276929	5.75347325280549	5.75154763157189	5.57455293372797	5.37652588055582	0.374112618044264	0.274948333734071	0.58673095357303
Merged-chr19-46327203-3	chr19	46327129	46327329	+	746.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133694)	promoter-TSS (NM_133694)	-73.0	NM_028627	73728.0	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	4.02593484240105	3.88870185388922	3.64308049337145	3.31059055992447	3.82945717154191	3.64421709524832	3.62875951651214	3.79839764383084	-0.0144824676922567	0.977537859341358	0.991919359203651
Merged-chr1-151025331-4	chr1	151025238	151025438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	UCON26|Unknown|Unknown	-31903.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	5.22565934875515	5.64426989507657	5.19272096428997	5.45758671398613	5.5956153309246	5.49820917584541	5.59606554797607	5.22297756423172	0.155151045852296	0.597996520205565	0.825699210702461
Merged-chr11-68430686-4	chr11	68430597	68430797	+	960.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1428.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	5.71582985179203	6.07129545458761	5.54008004837724	5.56957653584253	5.4991730266163	5.60298329599067	4.94691106548675	5.26576017054784	-0.659746330493812	0.0358297179209484	0.188021490113181
Merged-chr2-13407474-1	chr2	13407374	13407574	+	804.0	f0_balb.idr	intron (NM_001081084, intron 27 of 66)	intron (NM_001081084, intron 27 of 66)	84402.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	3.73684685079551	3.80138306148536	3.45402227778704	3.82207314316992	3.51246986470205	3.63209984382645	3.61714927210723	4.0486100627027	-0.00667169242608326	0.989307976882582	0.995686728313637
Merged-chr17-34119415-4	chr17	34119289	34119489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037970, exon 1 of 13)	non-coding (NR_037970, exon 1 of 13)	511.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	7.81625462176965	8.24653102861576	7.51362639744048	7.37363332742013	8.08547854505229	8.44395854501897	7.65862328073513	8.01790731881818	0.387915666461331	0.117015705818291	0.378500655129107
Merged-chr9-22156791-4	chr9	22156710	22156910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001082532)	promoter-TSS (NM_001082532)	-36.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	8.14692420582845	8.16489478406805	8.04437657641506	8.13325270559851	8.26254623153676	8.2220425463629	8.58457588413907	8.19769392761383	0.257840096451585	0.119641126565432	0.382773091864477
Merged-chr2-121807116-4	chr2	121807012	121807212	+	980.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172673)	promoter-TSS (NM_172673)	-55.0	NM_172673	228564.0	Mm.121514	NM_172673	ENSMUSG00000027238	Frmd5	1500032A09Rik|A930004K21Rik|R75430	FERM domain containing 5	protein-coding	6.75967628313529	6.6112260368929	6.69476857558707	7.05905806656027	5.8008317972299	5.34359813187566	5.97629904226905	5.88056634938243	-1.55457877668218	2.24585025918435e-09	1.35357642335718e-07
Merged-chr3-100734765-4	chr3	100734670	100734870	+	959.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-49297.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	4.06878196999645	3.81560169646759	4.17466073626819	4.64246795368001	4.55164818910639	4.49306061337378	4.42721914271973	4.83026524274372	0.798683274463876	0.0791402294110895	0.30441082892472
Merged-chr9-7345680-4	chr9	7345584	7345784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001320077, intron 1 of 10)	intron (NM_001320077, intron 1 of 10)	1287.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	6.60576596634493	6.26500934789984	6.463814677101	6.83630544432544	6.36618917052651	6.13172639519927	6.43074512653302	6.40764500094562	-0.341821381788029	0.153146517075056	0.437555330104179
Merged-chr5-88565232-1	chr5	88565132	88565332	+	1000.0	f0_c57.idr	exon (NM_001289775, exon 1 of 13)	exon (NM_001289775, exon 1 of 13)	192.0	NM_001289775	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	5.49905362387723	5.60010523812034	5.83349580132976	5.90876844685525	5.48132641798703	5.83958900154583	5.80375757861894	5.58119300804208	-0.0958986372875693	0.728106507199784	0.891779294267982
Merged-chr1-36270800-4	chr1	36270694	36270894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153408, intron 1 of 3)	intron (NM_153408, intron 1 of 3)	2631.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	7.5829648380979	7.52932999022716	7.70787472478383	7.48081743944887	7.52478164151237	7.37998489141998	7.46672416168313	7.40262428714553	-0.163261464933996	0.343954664088714	0.652532024712027
Merged-chr16-91358640-3	chr16	91358528	91358728	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14155.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	2.99248640769588	2.90593359395296	2.99280264017941	2.37590948291757	4.30982143587993	4.0291267478824	4.31277142441708	4.39971311430686	8.13346157501791	2.96511362093162e-17	6.87471734281081e-15
Merged-chr15-72809201-4	chr15	72809112	72809312	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002864, exon 1 of 1)	non-coding (NR_002864, exon 1 of 1)	1112.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	4.96321408816595	4.60608743451933	4.55728908048384	4.91915978242323	5.17958629918739	5.03063293335772	4.97409768493561	5.46959557998281	0.766734338645596	0.0244411912616305	0.146144115659576
Merged-chr10-20077301-4	chr10	20077218	20077418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 12 of 29)	intron (NM_008580, intron 12 of 29)	-71602.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	6.30881088352332	6.44198626318884	6.15579964613452	6.37317194766842	5.93253265533745	6.50292317426382	6.25942940149164	5.99929049696319	-0.222374312340925	0.36681267849903	0.671196990130232
Merged-chr18-14783924-4	chr18	14783818	14784018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001100449, exon 1 of 15)	exon (NM_001100449, exon 1 of 15)	673.0	NM_001100449	72504.0	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	5.38474352076664	5.32481421885913	5.9299144991365	5.75039462032307	5.37708598246289	5.40051258714807	5.72874283511956	5.65841540763193	-0.137070489728512	0.64613962234296	0.851230685864498
Merged-chr11-80327514-4	chr11	80327412	80327612	+	985.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139228, intron 4 of 8)	intron (NM_139228, intron 4 of 8)	26600.0	NM_139228	246104.0	Mm.194148	NM_139228	ENSMUSG00000017692	Rhbdl3	AI847581|Rhbdl4|Rhomr1|Vrho	rhomboid like 3	protein-coding	4.92945116641795	5.15724673496334	4.96624203480858	5.10590237587896	5.22434918894079	4.95243363243596	4.94251388281059	4.99787723673846	-0.0104323371280765	0.97341992967472	0.990485651958264
Merged-chr6-125422491-4	chr6	125422379	125422579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-41975.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	5.48918692541466	5.10626301278812	5.43709347562917	5.02034147743556	5.40809848184735	5.23884495218832	5.32634770642073	5.37793087357241	0.152792722332566	0.614131128525632	0.833658125917707
Merged-chr11-83655870-4	chr11	83655785	83655985	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6507.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	5.51912318206746	5.28700068288809	5.40656574204753	5.12498026552246	5.94071434758338	5.89287953200208	5.18935532340164	5.4887700365573	0.588711385837485	0.0599829316160483	0.258414543608444
Merged-chr16-37689442-4	chr16	37689348	37689548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-35080.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	6.67389876312234	6.4169164976436	6.90558547521199	6.88463394474775	6.67239810774489	6.45230225745277	6.64107732313729	6.5281881648969	-0.229848994510758	0.301303012430391	0.613351459182716
Merged-chr10-94408868-4	chr10	94408767	94408967	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	96918.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	4.74971417337667	4.75766649084975	4.55131914605685	4.50248371315835	4.94952428756211	4.80828227186049	4.76395666936162	4.50470152265372	0.293389990364003	0.403054760982291	0.700563192893026
Merged-chr15-53414998-4	chr15	53414878	53415078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-68795.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	7.63118444109213	7.32652889044672	7.58966444285843	7.83745853303461	7.50537648531983	7.48501602246098	7.70726943377334	7.4368605302751	-0.106204063649064	0.58096848354222	0.816047207441467
Merged-chr12-85305674-4	chr12	85305579	85305779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145138, intron 19 of 21)	intron (NM_145138, intron 19 of 21)	17088.0	NM_172414	72350.0	Mm.158810	NM_172414	ENSMUSG00000045064	Zc2hc1c	2810002I04Rik|AV046379|Fam164c	zinc finger, C2HC-type containing 1C	protein-coding	5.19047246302793	5.18260652704433	5.0498406130619	5.4094766537125	5.61047876105597	5.58001863541059	5.19882110408156	5.61087603956763	0.499160970601918	0.094703961491096	0.336743594513674
Merged-chr3-51416646-4	chr3	51416532	51416732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053089, intron 1 of 19)	CpG	616.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	5.3438083458868	4.9853783947845	5.15753592210066	5.12150521753544	5.2332753034698	5.48887620148544	5.47980958011319	5.45186608831306	0.468154915198541	0.108513321658074	0.363575554325258
Merged-chr13-60435113-3	chr13	60435018	60435218	+	884.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-166829.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	4.32425728528158	4.02940628383868	3.95886686975218	4.0843958681977	3.71492774966935	3.75786070912185	3.68386637930402	3.5109480832443	-1.26359377606877	0.00675744752864779	0.0593300058766031
Merged-chr4-35158042-4	chr4	35157933	35158133	+	838.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178061)	promoter-TSS (NM_178061)	-549.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	4.2943041275993	4.679451825904	4.46810986796248	4.64131770957752	4.34864972597831	4.10686824894059	4.3648473864807	4.38171464696335	-0.539848919383832	0.161715324535568	0.450701382913326
Merged-chr14-69861597-4	chr14	69861487	69861687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 3 of 6)	intron (NM_028560, intron 3 of 6)	21180.0	NM_028526	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	5.74714101736587	6.00812907612742	5.46716165661535	5.69704662643365	5.77205907107908	6.19290451523806	5.98865847652498	5.79350946435827	0.314801163336041	0.244286667496723	0.555437511354735
Merged-chr14-54750749-3	chr14	54750648	54750848	+	908.711121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	31138.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	4.21062448820999	3.8363733571285	4.04197942698044	4.26699901271788	3.7495678730275	3.85614492906743	3.60401781138688	3.9455922759363	-0.883376689961035	0.0537841789789902	0.242052726612157
Merged-chr15-59729013-4	chr15	59728917	59729117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	65942.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	7.13542349801714	7.3079665797754	6.97112870464097	7.39896997503029	7.41134330312746	7.25313877646424	7.58702405727068	7.40868448002128	0.261990146084526	0.180823954011383	0.477214692812375
Merged-chr4-143211751-6	chr4	143211607	143211807	+	832.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256380, intron 1 of 7)	intron (NM_001256380, intron 1 of 7)	1002.0	NM_001081355	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	3.31493385235354	3.41938072526059	3.42341868604382	2.98652687794841	3.45150262223381	3.485939098178	2.98997125423265	3.0668270377778	-0.0802035787830304	0.89316471993479	0.960067775059052
Merged-chr2-153632725-4	chr2	153632642	153632842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195390)	promoter-TSS (NM_001195390)	39.0	NM_001195390	99311.0	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding	5.60653282363513	5.67973644644697	5.71929387956668	5.83250707755565	6.21971916962439	6.18089906294296	6.01682750697189	6.4002984932801	0.767811175209417	0.00180316533278204	0.0215635211358617
Merged-chr17-32534278-4	chr17	32534178	32534378	+	965.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2279.0	NM_001356302	70101.0	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	5.525345654004	5.26768438664995	5.11781682747166	5.47773135899273	5.35555049317067	5.32699236473969	5.15954333540615	4.92991704446237	-0.281656208069568	0.359934951958074	0.665587912953958
Merged-chr17-8836447-4	chr17	8836338	8836538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	-13547.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	5.44806830573438	5.89611238199662	5.33918926150672	4.96699395010541	5.31717947032541	5.11847797282032	5.16116882798478	4.41736218330432	-0.733012170642805	0.0643871930869937	0.269619838175437
Merged-chr7-97094433-4	chr7	97094330	97094530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	MLT1G|LTR|ERVL-MaLR	12679.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	5.14468279059945	4.88016789893639	5.30087214106435	5.92520924272545	5.11583120440306	4.55029191361216	5.30292525790202	5.29715014709172	-0.525998377678477	0.187685326702793	0.48610501726011
Merged-chr15-100552037-4	chr15	100551910	100552110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033476)	promoter-TSS (NM_033476)	-2.0	NM_001289603	21422.0	Mm.219040	NM_033476	ENSMUSG00000009733	Tfcp2	CP-2|CP2|D230015P20Rik|LBP-1c|LBP-1d|LBP1|LSF|Tcfcp2|UBP-1	transcription factor CP2	protein-coding	8.43059857703249	8.48571825323981	8.24035213134124	8.12794225543641	8.47477135063566	8.64489106547754	8.18376423102036	8.30397206727056	0.112639959958863	0.528495596296056	0.785101361861029
Merged-chr3-136426741-4	chr3	136426650	136426850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22599.0	NR_040592	70055.0	Mm.261063	NR_040592	ENSMUSG00000099508	1700030L20Rik	-	RIKEN cDNA 1700030L20 gene	ncRNA	7.47155741897069	7.24275473344447	7.53637633257828	7.64460514013346	7.32460274910649	7.42617103311403	7.47252603334185	7.28777380503457	-0.148671249919682	0.423170658078612	0.71512023436319
Merged-chr8-68208046-4	chr8	68207937	68208137	+	708.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-68491.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	4.13858236062758	3.66406203166019	3.74527321018092	3.99676939076238	3.97213309652726	4.02954293394625	4.27742158602056	3.79947041123116	0.341372418453953	0.455202478823848	0.738815095268454
Merged-chr9-59294369-4	chr9	59294276	59294476	+	958.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359282, intron 1 of 6)	intron (NM_001359282, intron 1 of 6)	2804.0	NM_028121	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	5.38311086885942	5.00841159672239	4.70261849047536	4.829047420509	5.10024924507531	5.11136875966561	4.91351765134665	4.78250590376914	-0.0191491071885377	0.955867441477765	0.984313078570438
Merged-chr2-167752999-4	chr2	167752904	167753104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61827.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	6.91544617022387	6.93725752420207	6.76042786930949	6.05446523139791	6.65838508147738	6.85051012629376	6.41390419138856	6.18723439485212	-0.217132565907482	0.445846299017676	0.73171921081227
Merged-chr11-84290761-6	chr11	84290707	84290907	+	888.673584	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133360, intron 28 of 53)	intron (NM_133360, intron 28 of 53)	95369.0	NM_133360	107476.0	Mm.31374	NM_133360	ENSMUSG00000020532	Acaca	A530025K05Rik|Acac|Acc1|Gm738	acetyl-Coenzyme A carboxylase alpha	protein-coding	3.02863476034795	2.98121722846609	3.14781680287547	2.66282494953319	3.12847641724631	3.20202893689582	3.07796226896497	3.14605248765102	0.759208065749119	0.206139541108145	0.51005688450435
Merged-chr16-35939866-4	chr16	35939775	35939975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013371)	promoter-TSS (NM_001013371)	-848.0	NM_001013371	209200.0	Mm.390852	NM_001013371	ENSMUSG00000049502	Dtx3l	AU042200|BC023741	deltex 3-like, E3 ubiquitin ligase	protein-coding	7.75991958472333	7.95095691499764	7.88295735095067	7.95746179316163	7.84151703198613	8.0884206383817	7.69956667645861	7.65661540438875	-0.0815571179224647	0.644850771660474	0.850540242207308
Merged-chr6-134559753-3	chr6	134559685	134559885	+	974.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	7128.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	3.93914390730859	4.36108613111254	3.69292252683467	4.25463310648217	3.33468453750164	3.43738173652221	3.30937850698993	3.3877366265073	-2.4116081696114	1.30105941915132e-05	0.000349860628620218
Merged-chr9-92485043-3	chr9	92484905	92485105	+	790.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178711, intron 6 of 8)	intron (NM_178711, intron 6 of 8)	27627.0	NM_178711	235527.0	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding	3.56362877166795	3.23753768270473	3.25174087732393	3.85752906626782	2.88158370029125	3.17344497480316	3.11768931664302	2.9910594312032	-1.87452835248732	0.00283915555012764	0.0306333565109194
Merged-chr3-9914750-3	chr3	9914641	9914841	+	769.827759	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81062.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	3.69105319615654	3.75229724741237	3.69155354374556	3.18886415942681	4.05011604291001	4.26994088828633	4.31498076826781	4.09582513344301	1.72668577821323	0.000307507313511734	0.00517746624522363
Merged-chr18-60859307-4	chr18	60859213	60859413	+	877.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10349.0	NM_001198984	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	4.08430738498449	4.40341703604873	3.98046871308439	4.18533186694983	4.56853075246712	4.15759940891857	4.16351048779491	4.26885905455825	0.331561887078379	0.423420428025614	0.715311701020053
Merged-chr8-108612166-4	chr8	108612061	108612261	+	963.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27484.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	5.29892957753318	5.39658551280268	4.78151621566353	5.46827710249478	5.05858048221079	4.87534833781631	5.15535063754439	5.0111238970528	-0.461825643721866	0.163004525080045	0.452588576125634
Merged-chr11-102431186-4	chr11	102431108	102431308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008175, intron 1 of 12)	intron (NM_008175, intron 1 of 12)	886.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	4.96051407157666	5.44761232942288	4.48871248716728	4.5706739670178	5.09281742030962	5.55780531817775	4.97251163682183	5.12672594713639	0.533116126111887	0.173553289146701	0.467593382345019
Merged-chr1-157008861-3	chr1	157008762	157008962	+	977.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69236.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	5.01043967175038	4.64260310009389	4.35266029538061	4.62930173461423	3.89085364387828	4.1746396314954	4.46150300453824	4.30370480185949	-1.08139559777263	0.0101465526715569	0.0797219843336614
Merged-chr15-79694005-3	chr15	79693920	79694120	+	902.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013818, intron 1 of 11)	intron (NM_013818, intron 1 of 11)	3124.0	NM_013818	14904.0	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	3.50101664402546	3.65530483096596	3.50147686314532	3.09779964602827	3.8247901431332	3.73359174160684	3.59946048968536	3.90076539015773	1.04355747842381	0.0420329313981645	0.207729651536718
Merged-chr19-59344468-4	chr19	59344377	59344577	+	789.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033222, intron 1 of 4)	intron (NM_001033222, intron 1 of 4)	1303.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	4.07385920674029	3.94512177776573	3.6072710269976	4.21168399327511	3.87847165502436	3.9559699413711	3.82050358444886	3.88504287784466	-0.298126235470748	0.518187417307194	0.779362628036693
Merged-chr6-86850285-2	chr6	86850185	86850385	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028298)	promoter-TSS (NR_028298)	768.0	NM_001040106	269774.0	Mm.221038	NM_177762	ENSMUSG00000057230	Aak1	5530400K14Rik|9630042K20|AU067724|AU067726|BC028270|C79663|D6Ertd245e|R75501|mKIAA1048	AP2 associated kinase 1	protein-coding	3.738766629561	3.49796112347758	3.739312574154	3.2793811683765	3.84478815695007	3.80709456721075	3.55975084373104	4.17201054237584	0.901775340928147	0.0731010303146143	0.290985708100113
Merged-chr6-106283898-4	chr6	106283788	106283988	+	962.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109749, intron 5 of 25)	intron (NM_001109749, intron 5 of 25)	165123.0	NM_001109751	269784.0	Mm.321683	NM_173004	ENSMUSG00000064293	Cntn4	9630050B05|Axcam|BIG-2	contactin 4	protein-coding	4.95775121424063	4.81472654887971	5.00048199878958	5.52530281054594	5.79837109528948	6.02474331197074	6.21789914187799	5.80329550012992	1.40935792832828	2.67257992957082e-05	0.000657558129301491
Merged-chr2-4559665-4	chr2	4559572	4559772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177844)	promoter-TSS (NM_001177844)	-82.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	7.01043216356844	6.82906427780175	7.17393627751953	7.36448792214803	6.68296395329997	6.88274707622948	7.26152909545811	6.74646792893803	-0.289269353301705	0.211906369577354	0.516740975730402
Merged-chr18-33464091-3	chr18	33463996	33464196	+	989.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045415)	promoter-TSS (NR_045415)	-67.0	NM_001109988	27528.0	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	4.29903600086488	4.39115480435349	4.16490684645093	4.99011710828516	3.83373735062747	4.0284057638993	3.99796136105741	3.90177581866534	-1.49119930664337	0.00122913213351244	0.015863716433596
Merged-chr12-87325642-4	chr12	87325548	87325748	+	960.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011479, intron 9 of 11)	intron (NM_011479, intron 9 of 11)	-25943.0	NM_001290302	217738.0	Mm.219363	NM_001290302	ENSMUSG00000050671	Ism2	Gm264|Thsd3	isthmin 2	protein-coding	5.35884245051388	5.50847578495683	5.35976271187001	5.5662793743045	5.40026526420121	5.59073674635578	5.03742307582678	5.19912764847471	-0.24270746439395	0.412479374218877	0.707583519920819
Merged-chr8-115537078-3	chr8	115536949	115537149	+	834.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	169845.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	4.42299717671845	4.75199745201321	4.25243033532001	3.93924923295012	4.10023419013629	4.63351579127069	4.03829563011436	3.99861863844461	-0.374387030900154	0.420914358947415	0.713593114282418
Merged-chr2-50670583-4	chr2	50670501	50670701	+	788.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-239083.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	3.78319633893653	4.11469478612003	3.67799985803945	3.74908907516373	3.70386545747414	3.48423051739049	3.76810748783541	3.87906417508919	-0.366928092322283	0.444220633648922	0.73065602044221
Merged-chr10-12922695-4	chr10	12922606	12922806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_038027, exon 1 of 4)	non-coding (NR_038027, exon 1 of 4)	421.0	NR_038027	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	6.60787374435353	6.80600729768904	6.76041947074568	6.95716634436248	6.96626724065032	6.68600435523981	6.42230479867585	6.65165722928972	-0.13110043177919	0.55777971926357	0.802859449504796
Merged-chr18-75837809-1	chr18	75837709	75837909	+	604.333313	f1_c57bl6.idr	intron (NM_145356, intron 1 of 4)	intron (NM_145356, intron 1 of 4)	17631.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	2.61921275719146	2.7987945007258	2.76466795155939	2.66769417264483	2.87662916523944	3.0060164202719	3.11056883858516	3.17352455930575	1.47342792341867	0.0159580682911999	0.109479978232368
Merged-chr11-43412948-4	chr11	43412854	43413054	+	929.5750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13027.0	NM_013917	30939.0	Mm.6856	NM_013917	ENSMUSG00000020415	Pttg1	AW555095|C87862|Pttg|Pttg3	pituitary tumor-transforming gene 1	protein-coding	4.31044577465519	4.54139288243935	4.21132317111252	4.54509803353543	4.66179596198606	4.66281290003764	4.7639822482844	4.44502449335514	0.477264426028348	0.198078536392613	0.499574885075483
Merged-chr6-86487401-4	chr6	86487302	86487502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040292, intron 1 of 1)	intron (NR_040292, intron 1 of 1)	825.0	NR_040293	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	6.47037436950803	6.62720349971575	6.42003648928348	6.54480746818914	6.30567555942316	6.46774009712244	6.42162143242713	6.43283419304079	-0.176547593974899	0.40321131587097	0.700666571760464
Merged-chr2-13271442-4	chr2	13271345	13271545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009105)	promoter-TSS (NM_009105)	-30.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	9.01325377612621	8.99815216621216	9.05300408343538	9.03099532688457	9.12802775561204	9.2816444031762	9.37623709962586	8.95476288833081	0.210404766619518	0.167227983619072	0.45876515247136
Merged-chr13-21945263-4	chr13	21945166	21945366	+	971.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360886, intron 1 of 5)	CpG	166.0	NM_001360886	193452.0	Mm.187446	NM_183014	ENSMUSG00000006720	Zfp184	4930500C15Rik	zinc finger protein 184 (Kruppel-like)	protein-coding	5.02152251961613	4.99712095678605	5.15053639646934	5.08502123991382	4.7066573730919	4.93882677432444	5.15492463087466	5.01895918580189	-0.215463642310213	0.500028612779373	0.768649287945383
Merged-chr18-24603844-4	chr18	24603764	24603964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139143)	promoter-TSS (NM_139143)	-47.0	NM_139143	106957.0	Mm.21688	NM_139143	ENSMUSG00000024270	Slc39a6	Ermelin|Zip6	solute carrier family 39 (metal ion transporter), member 6	protein-coding	8.41053953974997	8.22737053663378	8.16666123855863	8.59245254034347	8.13911391522288	8.3569077740182	8.57719245088421	8.62867796409494	0.0887108837213426	0.636881903271076	0.846500046550743
Merged-chr8-11475895-4	chr8	11475804	11476004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-2025.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	6.6059010178176	6.37983503570543	6.52783999427554	6.60529726619855	6.5624496885268	6.47222242473848	6.61839010667298	6.47316231199573	-0.00210211795564957	0.991972006288399	0.996930115575037
Merged-chr6-145244443-4	chr6	145244348	145244548	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021284, intron 2 of 4)	intron (NM_021284, intron 2 of 4)	5783.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	5.54559177261026	5.02301275320866	5.19723788085811	5.76530791919637	5.3685722685747	5.19747131967697	5.26782452796029	5.56777973177912	-0.132160462499167	0.68614944146816	0.871774647810045
Merged-chr4-129640200-3	chr4	129640059	129640259	+	830.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005506, intron 1 of 9)	intron (NM_001005506, intron 1 of 9)	646.0	NM_001005506	109658.0	Mm.268863	NM_001005506	ENSMUSG00000053841	Txlna	2600010N21Rik|AI425952|AW209241|Il14|Txln	taxilin alpha	protein-coding	3.22261256400642	2.82605779839045	3.22305808752587	3.1309920121323	2.88371838016276	3.49981357843294	3.0928068543603	3.27681723910228	0.361479849753248	0.554135054136752	0.800543515697176
Merged-chr4-141874349-4	chr4	141874250	141874450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	570.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	5.67625629241413	6.22575349206899	6.09803633135203	5.17071531055296	6.7607852370182	6.57284022720846	6.14778938343319	6.5192489102466	1.03037222857989	0.00101471258112009	0.0135968047461496
Merged-chr12-55414904-2	chr12	55414804	55415004	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310583, intron 6 of 6)	(CAAAA)n|Simple_repeat|Simple_repeat	16079.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	2.9520091443937	3.03630324865219	3.16418769289836	2.73483390503175	2.73359744526342	2.72681854802048	2.68862804043643	2.95083044978547	-0.921052902408779	0.159743222507812	0.447447858467163
Merged-chr12-57230412-4	chr12	57230314	57230514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037746)	promoter-TSS (NM_001037746)	2.0	NM_001037746	328099.0	Mm.268180	NM_001037746	ENSMUSG00000079104	Prps1l3	AU021838|AW536152|Gm5081	phosphoribosyl pyrophosphate synthetase 1-like 3	protein-coding	9.0500525077247	9.09216674733035	9.09199063024706	9.27191290919257	9.06942992186939	9.08749075453353	9.22804832027597	8.88083442665414	-0.0752134943246247	0.618551950137469	0.836022749315106
Merged-chr6-149375310-4	chr6	149375217	149375417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33667.0	NM_001112796	12121.0	Mm.177181	NM_009753	ENSMUSG00000003452	Bicd1	B830009D06Rik|bic-D 1	BICD cargo adaptor 1	protein-coding	6.42709553193547	6.43794532047088	5.79866983669691	6.66272757100684	6.56762983114034	6.34008455431921	6.65563133125064	6.17902724527766	0.101421591395881	0.70816962569117	0.882710273980338
Merged-chr6-82740396-3	chr6	82740314	82740514	+	921.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 7 of 17)	intron (NM_013820, intron 7 of 17)	34040.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	3.92613254021228	4.11858437070067	4.04490238680819	3.69234003848643	5.19279992616748	5.03506233368812	4.37257012736524	4.4335566086544	2.03094536326333	2.4097614838875e-06	7.73329182423934e-05
Merged-chr16-36633780-4	chr16	36633683	36633883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	32294.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	5.32560402251787	5.67573302565594	5.62875587833236	5.4280990771029	5.91641376603489	6.04679000727798	6.04612869808054	5.80044341959683	0.719678231529057	0.0054220060405209	0.050442160235033
Merged-chr12-59130850-2	chr12	59130750	59130950	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165253)	promoter-TSS (NM_001165253)	-603.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	4.13900815635077	4.1960431839606	4.42091890595716	4.3853046176134	4.38626960735021	4.78435810051394	4.31447588079872	4.57616620397749	0.518324407089963	0.181506643945536	0.478215473095442
Merged-chr8-104371300-3	chr8	104371193	104371393	+	865.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	B1_Mur4|SINE|Alu	24514.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	3.39527892641911	3.72474184923706	3.39569788471582	3.26995581322048	3.65841531327714	3.68386767735803	3.70122219189839	3.45338206415039	0.576923273672648	0.252821052496213	0.564053388128433
Merged-chr6-145303800-4	chr6	145303707	145303907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53255.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	7.15990217309314	7.04504808016385	7.52444089351262	7.50687241332846	7.34267618809807	7.06599330919062	7.51322037975753	7.34077369474204	-0.00629672422052891	0.976016099620297	0.991449386406261
Merged-chr6-145803054-4	chr6	145802952	145803152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5331.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	8.51017954400827	8.60962434357862	8.6764465561677	8.86263061326533	8.45338842266194	8.18269324961224	8.53887297853298	8.54935424498384	-0.296715523998557	0.0775419242176088	0.301171812163094
Merged-chr2-164455049-4	chr2	164454944	164455144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5927.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	7.91400776371502	8.16330329714236	7.6605406872858	7.52686121087106	7.74384559474726	8.00598215901928	7.63159068186826	7.60285757359598	-0.104821360591575	0.615152517426989	0.834301983320473
Merged-chr7-99483745-4	chr7	99483642	99483842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012052)	promoter-TSS (NM_012052)	-33.0	NM_012052	27050.0	Mm.236868	NM_012052	ENSMUSG00000030744	Rps3	D7Ertd795e|Rs_3	ribosomal protein S3	protein-coding	8.11662358406741	8.33271812299303	8.05414837404274	7.76691611974795	8.1362156747674	8.33841403380178	7.73901982630178	7.97462768100774	-0.0161019234240041	0.936973752402686	0.977204440107264
Merged-chr3-135699750-2	chr3	135699682	135699882	+	825.75	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-8235.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	3.79075127995362	3.32163773918801	3.79128981767086	3.57786633587019	4.32441755204678	4.16182251755986	4.06116528788592	3.84185951554737	1.3695502101449	0.00367402258586	0.0374446239460094
Merged-chr1-74241048-1	chr1	74240948	74241148	+	1000.0	f0_balb.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	4531.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	3.40821610493743	3.3986019708119	3.81993603267371	3.98387879320089	3.38341800103508	3.46054855525681	3.33543414671659	3.62868149840716	-0.762322466131127	0.159565613094111	0.447224790298699
Merged-chr6-53455677-3	chr6	53455588	53455788	+	807.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-117686.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	3.31314103303078	3.44652189672278	3.774008293458	3.6471737489565	2.99246156075836	3.29783142427502	3.66839272937581	3.24912174834317	-0.815409785257532	0.161401651416586	0.450137455770754
Merged-chr13-59848273-3	chr13	59848167	59848367	+	743.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-25120.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	2.85399138935967	2.7846839563707	3.41502486879871	2.84005617892273	3.65241027084489	3.36888445340344	3.23985430718629	3.30734074975912	1.55529069713298	0.0127864727254228	0.0940506708817678
Merged-chr5-31082561-2	chr5	31082437	31082637	+	722.291626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10990.0	NM_011773	22784.0	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	3.54332071029622	3.31156827246991	3.13956458555154	3.06877555968437	3.76790587615775	3.3183984108043	3.47853177562947	3.26665637568055	0.73124980199166	0.190148104502774	0.489247828600454
Merged-chr19-40589445-4	chr19	40589332	40589532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019698)	promoter-TSS (NM_019698)	-969.0	NM_153554	56454.0	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	6.02397268920629	6.16466125455092	5.93225403164317	6.11787663640119	6.51773007300151	6.56574891638399	6.35859895487104	5.77506676717537	0.420499527348048	0.110154902212928	0.366573710612399
Merged-chr8-41364122-4	chr8	41364033	41364233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019734, intron 1 of 13)	intron (NM_019734, intron 1 of 13)	10564.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	6.63776287468776	6.66867573283229	6.52670121911609	7.02240257600466	6.63309465005001	6.38271365068849	6.63524068804402	6.52204333287518	-0.279552758680962	0.217283091277112	0.524128817744799
Merged-chr8-95024578-4	chr8	95024450	95024650	+	859.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173036, intron 2 of 11)	intron (NM_173036, intron 2 of 11)	6858.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	4.06459992637774	4.10543051686871	3.96449123880683	4.43106800476306	3.85529495320488	4.13906993394015	4.18405896545925	4.20023282019548	-0.198390151800801	0.649289753180145	0.852689950952206
Merged-chr17-55879036-4	chr17	55878956	55879156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144546)	promoter-TSS (NM_144546)	-103.0	NM_144546	104349.0	Mm.460659	NM_144546	ENSMUSG00000057835	Zfp119a	AL024077|Mzf13|Zfp119	zinc finger protein 119a	protein-coding	7.09236071112104	6.92047073256941	6.97102643883337	6.62245550624536	6.92735322208604	7.10886480769978	7.31924589992246	7.26261261242932	0.359241862276032	0.0914362865925963	0.330449409757548
Merged-chr14-14345713-4	chr14	14345602	14345802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008369)	promoter-TSS (NM_008369)	-793.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	8.26331747293331	8.49504721489588	8.36191921825748	8.32996384538279	8.61379639619602	8.68024454732919	8.61972167192888	8.85740693920687	0.415058688166938	0.00692443083593659	0.0604234476487839
Merged-chr17-56132832-4	chr17	56132669	56132869	+	915.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013662, exon 2 of 17)	exon (NM_013662, exon 2 of 17)	1083.0	NM_013662	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	3.51132368988687	3.5144692082398	3.34091130147192	3.31277710480814	3.60740405918421	3.39185067242384	3.20325665466744	3.79466466438398	0.344024303423247	0.515180991121777	0.777418808265109
Merged-chr3-146107629-4	chr3	146107526	146107726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172864, intron 1 of 22)	intron (NM_172864, intron 1 of 22)	410.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	5.12460379869239	4.89557226790253	5.29156448164682	5.32091379039052	5.42069299244667	5.52702434483584	5.54187733239359	5.77279609232694	0.685998217329421	0.0211117043881844	0.132701342868825
Merged-chr15-100495293-4	chr15	100495197	100495397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153407)	promoter-TSS (NM_153407)	-58.0	NM_153407	207785.0	Mm.294969	NM_153407	ENSMUSG00000044636	Csrnp2	CSRNP-2|Csnrp2|taip-12	cysteine-serine-rich nuclear protein 2	protein-coding	6.82656109983413	7.10894546782963	6.80044849039348	6.77559423282275	6.66036367785687	6.78369593268235	6.24547475326509	6.60203908888524	-0.419484337765862	0.0597742520996378	0.257839815849214
Merged-chr13-92241590-4	chr13	92241497	92241697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010829, intron 19 of 23)	intron (NM_010829, intron 19 of 23)	-113186.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	7.00804755716085	6.8394353165075	7.02094614369204	6.94657637425507	6.3677584430371	6.7065814058775	6.49565321728764	6.55827643838109	-0.607056506091491	0.00298641505840465	0.0318774980041207
Merged-chr1-40087671-4	chr1	40087581	40087781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360800, intron 1 of 8)	MER5A|DNA|hAT-Charlie	1588.0	NM_001360800	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	6.07574894852516	6.31954583731811	6.25985309152072	6.07934188770381	6.19986953728881	6.29637592998729	6.40323104981855	6.46403420099991	0.238736925501294	0.293121827012617	0.605634790273762
Merged-chr6-145249550-4	chr6	145249459	145249659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045598)	promoter-TSS (NR_045598)	672.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	5.70761057739984	6.13552924473269	6.21618272761645	6.01854498617802	5.964655903755	6.39118529803982	6.27543018211584	6.42113605136699	0.355985717405439	0.161315664009467	0.450029320380696
Merged-chr18-67369809-4	chr18	67369707	67369907	+	983.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20924.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	5.11551756904015	5.19482255543055	4.89022103473621	5.18960864946257	5.24226725323647	5.62159967712481	5.68309548502208	5.212624621716	0.611291417791947	0.0482049778432436	0.226565610297702
Merged-chr13-42052844-4	chr13	42052738	42052938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 1 of 8)	intron (NM_007772, intron 1 of 8)	817.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	6.89635756365223	7.17811590681718	6.66025010466576	6.10516017857671	6.85584562786779	6.83708797409412	6.67126285078636	6.36303256059442	-0.0880150517585506	0.755901915765981	0.904046752286092
Merged-chr14-106692380-2	chr14	106692289	106692489	+	745.833374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-205869.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	3.66156099343461	3.59412685930516	3.75522744260654	4.10865282141128	3.00507607551117	3.24783395065811	3.05168416769267	3.20223662948477	-2.64585986322686	1.81069510035113e-05	0.000467138334715089
Merged-chr2-31165159-4	chr2	31165066	31165266	+	711.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178760, intron 1 of 17)	L1MEd|LINE|L1	12850.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	4.22192942961277	4.28696211605901	3.86675096525049	3.61836808424823	3.77761214042812	3.76356864356502	3.68894768350243	3.91471890763341	-0.649785547757119	0.183686188820559	0.480761104819123
Merged-chr8-45415173-4	chr8	45415117	45415317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4598.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	6.27216213474788	5.86282298986862	6.29206087007496	6.61337499210443	6.46357280145092	6.3514316182372	6.41655911594433	6.12890054285438	0.0692915781498714	0.79003570055394	0.918782114705335
Merged-chr2-153170631-4	chr2	153170528	153170728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	L1ME1|LINE|L1	9327.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	6.93206764215866	6.85005118874292	7.22569858348295	6.93874445775789	6.44749792279591	6.94786419712774	6.76503315268182	6.40101811267393	-0.478969699036834	0.0339878844355151	0.181930728252847
Merged-chr12-85824741-4	chr12	85824680	85824880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081423)	promoter-TSS (NM_001081423)	113.0	NM_001360451	58520.0	Mm.143795	NM_021446	ENSMUSG00000021252	Erg28	0610007P14Rik|1190004E09Rik|AU019315|C77855|ORF11	ergosterol biosynthesis 28	protein-coding	7.04757814216379	7.26664951143292	7.32013540491337	6.8101300002	6.81795201250448	6.95717569121737	6.91271719850194	7.17047481047603	-0.20529988366708	0.341899812376393	0.650871536377087
Merged-chr2-73056308-4	chr2	73056190	73056390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75844.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	5.4630183579448	5.77620379490399	6.02529600715548	5.9281677808708	5.64694106412698	5.54797780161795	5.78156921145522	5.83012207560078	-0.192985304561981	0.476631149443871	0.753093932967774
Merged-chr9-22130663-4	chr9	22130579	22130779	+	986.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007388)	promoter-TSS (NM_007388)	-81.0	NM_007388	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	5.86144123897322	6.22815899403733	6.18629599976205	5.30186301430771	5.97699056727762	6.10482711086067	5.63415461366957	5.25019816313574	-0.245006040894831	0.476897986687993	0.753208576524599
Merged-chr13-73970701-4	chr13	73970617	73970817	+	938.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153830, intron 2 of 9)	intron (NR_153830, intron 2 of 9)	6866.0	NM_027704	71164.0	Mm.66995	NM_027704	ENSMUSG00000069189	Zdhhc11	4933421L13Rik|DHHC-11|Zdhhc20	zinc finger, DHHC domain containing 11	protein-coding	4.37104845276652	4.46883636164897	4.28200598638659	4.31239713181752	4.48210180205512	4.36177559444119	4.65528097442235	4.1831735242201	0.180266738831402	0.635967032822683	0.845986164419408
Merged-chr8-108737393-3	chr8	108737312	108737512	+	661.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	22768.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	3.31729628203482	2.85183597541297	3.19851550329939	2.94943929569381	3.62438976667383	3.54439188124999	3.24702320396396	3.42497137375904	1.42731328976556	0.0118614596401401	0.0891726695950076
Merged-chr17-80062324-4	chr17	80062218	80062418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144802)	promoter-TSS (NM_144802)	-50.0	NM_144802	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	8.12968623075078	7.99184064485893	8.48710155531459	8.5093957899417	8.27516685337612	8.4828018838734	8.43321675480282	8.4221517733639	0.125501356376853	0.492150032801471	0.763346782261791
Merged-chr10-123264045-4	chr10	123263948	123264148	+	775.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182807)	promoter-TSS (NM_182807)	-28.0	NR_153334	268354.0	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|Sam2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding	3.81259621566169	3.75482297115118	4.08628749852168	3.8502966814365	3.61262743025405	3.88089241695375	3.7461946793926	3.75919886182968	-0.387972746669518	0.395492716254691	0.694395067841457
Merged-chr10-99182346-4	chr10	99182250	99182450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	74215.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	6.48689103514029	6.21003501313969	6.57957437426117	6.3194178048949	6.17524161601112	6.2352454480193	6.30427800026226	5.8617815496396	-0.368046817828337	0.123442538334263	0.389611406353962
Merged-chr15-73617783-4	chr15	73617663	73617863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357747)	promoter-TSS (NM_001357747)	-439.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	7.69535301351205	7.94386226496264	7.68046297122261	7.6894480984939	7.60598018346661	7.49164373698446	7.40167898051404	7.21828174326769	-0.414262887357431	0.0243562992178646	0.145812116969252
Merged-chr9-118658852-4	chr9	118658739	118658939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 6 of 27)	intron (NM_133721, intron 6 of 27)	52130.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.60634154605084	7.91352636961904	8.08443181339691	7.60159782354996	7.99611570442946	7.97526703594694	7.59675927742817	7.46078906888696	-0.041215015486654	0.845756137114632	0.941567756564101
Merged-chr4-120934069-3	chr4	120933987	120934187	+	677.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005788, intron 5 of 5)	intron (NM_001005788, intron 5 of 5)	-9082.0	NM_001160043	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	3.61973988532766	3.51402735433253	3.66714703319853	3.91569475667639	3.10100534096991	3.0589498745756	3.22220354404895	3.09672965143181	-2.20809488344957	0.000180257384676048	0.00333682570035335
Merged-chr3-97775026-4	chr3	97774917	97775117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 8 of 46)	intron (NM_001039376, intron 8 of 46)	-7003.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	7.04353430099778	7.15141116321081	6.59485925161284	6.71258276879613	6.86982678866515	7.28962569915407	6.73381714585105	6.80685206631812	0.067198913040348	0.775363834420876	0.912320643528997
Merged-chr9-110101037-4	chr9	110100933	110101133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252683)	promoter-TSS (NM_001252683)	54.0	NM_001252683	72831.0	Mm.276305	NM_133347	ENSMUSG00000032480	Dhx30	2810477H02Rik|C130058C04Rik|Ddx30|HELG|Ret-CoR	DEAH (Asp-Glu-Ala-His) box polypeptide 30	protein-coding	5.89514796247252	5.86313527076192	5.74181827349146	5.38076187373666	5.42629826575233	5.40751032782786	5.64054045312402	5.32537695946859	-0.452651831271658	0.120751991914755	0.384724213912194
Merged-chr1-184542504-4	chr1	184542395	184542595	+	964.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040472, intron 2 of 5)	intron (NR_040472, intron 2 of 5)	15196.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	5.42733378494201	4.81901029814959	5.50888183146063	5.68876451500027	5.53632283014472	4.93544177734229	5.55616956050157	5.24616236463553	-0.1055548215938	0.764235983268039	0.907569734027842
Merged-chr10-121334743-4	chr10	121334675	121334875	+	969.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361015, intron 2 of 12)	intron (NM_001361015, intron 2 of 12)	16869.0	NM_001361015	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	4.29387131263293	4.41751401329723	4.394296344775	4.64757912273868	4.96308950806623	4.8284452816553	5.00233068195879	4.76494068056244	0.908755024829125	0.011153967087375	0.0852494602504309
Merged-chr2-4447489-3	chr2	4447379	4447579	+	774.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	46503.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	3.27356670767811	3.22023052346504	3.4429870684238	3.32927258350604	3.51637515870475	3.50218928767239	3.32046765043348	3.33103553970329	0.371217634100996	0.469531007335881	0.748378822236993
Merged-chr4-107178519-4	chr4	107178457	107178657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025617)	promoter-TSS (NM_025617)	-73.0	NM_029565	56374.0	Mm.291192	NM_029565	ENSMUSG00000028618	Tmem59	1110001M20Rik|3110046P06Rik|AI256529|D4Ertd20e|MTDCF1|ORF18	transmembrane protein 59	protein-coding	7.6456282376089	7.82973941460744	7.73229440055994	7.80286751820958	7.90681853805312	8.16299950868716	8.0809609823046	8.07109770112305	0.382350171845121	0.0195801649311526	0.126125257214728
Merged-chr18-90579701-4	chr18	90579602	90579802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362365)	promoter-TSS (NM_001362365)	-123.0	NM_001362365	108168395.0	Mm.391131	NM_001362365	ENSMUSG00000110277	Gm45871	-	predicted gene 45871	protein-coding	7.88656398149261	8.01745858140489	8.12802779245119	8.33072191129467	8.08282230280863	7.97140688585583	8.47694406275228	8.14121644035948	0.0940191588315385	0.620592894288034	0.837348313567294
Merged-chr13-64307546-4	chr13	64307381	64307581	+	916.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025370, intron 4 of 5)	MTE-int|LTR|ERVL-MaLR	5229.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	4.87505049019808	4.87758103142862	5.32454889746351	5.25430285275352	4.18833355915714	4.31032585918698	4.37037807442652	4.11783326278683	-1.91053115663818	6.50977010946516e-07	2.3664909429092e-05
Merged-chr5-27195190-4	chr5	27195098	27195298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207282, intron 1 of 25)	intron (NM_207282, intron 1 of 25)	-66737.0	NM_001136060	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	5.77548175005051	5.48161268482258	6.00228637435349	6.1635453218493	5.69184932471691	5.6189523622762	5.86435637789132	6.13473743118909	-0.0857274473041383	0.768428376713816	0.909356419531329
Merged-chr18-3891059-4	chr18	3890954	3891154	+	995.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-274778.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	5.57122495529463	5.04109615054714	5.2816587293606	5.35248219840811	5.66196243784706	5.74568432230855	5.77834562362972	5.40215491270163	0.5725071044625	0.0468297990559173	0.222486868709193
Merged-chr14-103088799-3	chr14	103088701	103088901	+	729.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360342, intron 4 of 4)	ORR1E|LTR|ERVL-MaLR	10203.0	NM_001360341	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	3.41510501215145	3.47346560366485	3.61895863265437	3.49038422744357	3.34772504915803	3.34995281446487	3.22782600964941	3.29862294997466	-0.681249608745442	0.187357621997208	0.4857376862553
Merged-chr7-19465994-4	chr7	19465915	19466115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7521.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	5.70271951450406	5.83496721714069	5.95500977593547	6.27630848193697	6.17669433923813	5.98783407274659	6.11373362011216	6.38882244039573	0.299984672539198	0.258003029879627	0.569823559230946
Merged-chr13-100453332-3	chr13	100453221	100453421	+	969.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008670)	promoter-TSS (NM_008670)	-457.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	3.73717199389307	3.54955931527841	3.67750463332619	3.61428418892646	4.44959518564458	3.9748593470211	4.07791345026074	4.50976983143353	1.72263783033493	0.000108937028588689	0.00218054801966094
Merged-chr14-9635670-4	chr14	9635565	9635765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 8 of 9)	intron (NM_001360141, intron 8 of 9)	-248430.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	5.68101589455348	5.17030472981171	6.2961793683031	6.17791370553249	5.78227284594437	5.85877847825743	5.82449959408786	5.59635627630229	-0.228992822933421	0.486854931459082	0.7603696580653
Merged-chr4-9705940-4	chr4	9705841	9706041	+	963.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-36597.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	4.89998493515699	4.85296094376956	5.14740774004785	5.67437991054764	5.30729549580605	4.78096422002674	5.05690018659504	5.29453657257224	-0.143653503038224	0.700486607641956	0.879193388325841
Merged-chr11-51224192-3	chr11	51224096	51224296	+	963.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3778.0	NR_110444	71297.0	Mm.390420	NR_110444	ENSMUSG00000086646	Platr20	5133400J02Rik	pluripotency associated transcript 20	ncRNA	4.18390380341405	3.93026823061713	4.53704197935789	4.46126602360522	4.01644989486988	3.88231252693027	4.120541818687	4.13599809993697	-0.670315510542845	0.123993514383963	0.390765284926741
Merged-chr10-127557573-5	chr10	127557445	127557645	+	892.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 49 of 89)	exon (NM_008512, exon 49 of 89)	-22986.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	3.14638588081341	3.14601535382479	3.51663343285945	3.09791765109292	3.14336824852606	2.98453037012067	3.3568721979112	3.20495276274906	-0.195893967690531	0.732835482352111	0.894223505002294
Merged-chr10-117452335-4	chr10	117452244	117452444	+	861.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4909.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	3.7395975539434	3.70698724622496	3.9020779805311	3.86159022592193	4.18680604121873	4.02402959049674	3.88588994749249	4.25182510178725	0.787717058225393	0.0687135154544619	0.280043476469118
Merged-chr13-8644158-4	chr13	8644056	8644256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 3 of 10)	ORR1E|LTR|ERVL-MaLR	226888.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	6.92745211967727	6.82879851209805	7.51396489718224	7.45106206711117	5.85020874315707	5.9305209520286	6.45235893357318	6.38975471158477	-1.49636289170861	3.35216863667572e-08	1.5981514493633e-06
Merged-chr11-71008496-4	chr11	71008383	71008583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291147, exon 7 of 7)	3' UTR (NM_001291147, exon 7 of 7)	-4051.0	NM_178367	216877.0	Mm.35399	NM_178367	ENSMUSG00000040620	Dhx33	3110057P17Rik|9430096J02Rik|Ddx33	DEAH (Asp-Glu-Ala-His) box polypeptide 33	protein-coding	6.83987391841844	7.01480104974723	6.31582435097394	6.0407549822567	6.97643814582773	6.7900150598022	6.43146686512829	6.36911901839842	0.094800279657211	0.747553107945033	0.900629350728991
Merged-chr16-18396681-6	chr16	18396593	18396793	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001272031, intron 1 of 16)	intron (NM_001272031, intron 1 of 16)	4130.0	NM_001272032	11877.0	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velocardiofacial syndrome	protein-coding	3.63039266346954	3.96545082487457	4.1486273872079	4.19760407514438	3.46084435319199	3.68957854351062	3.61716919027662	3.56985332029528	-1.3102338520045	0.00787587021530028	0.0664765286440008
Merged-chr19-56742170-4	chr19	56742016	56742216	+	906.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19744.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	3.56354148621523	3.99542434445544	3.67386697471488	3.84092130055114	3.75606958580931	3.62067523112928	3.36919846255301	3.67181659255487	-0.510578920666731	0.304610870899461	0.617129638753006
Merged-chr11-34026905-4	chr11	34026803	34027003	+	895.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	MTB|LTR|ERVL-MaLR	-20025.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	4.24759631306325	4.30558427185435	4.37993866758761	4.39680305150647	4.4503030400711	4.32679631649389	4.36016355360494	4.19879951092927	0.00967701443071815	0.979605211256177	0.99269129061727
Merged-chr7-132551936-4	chr7	132551851	132552051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24447.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	6.90466971514094	7.03254079430328	6.41205644668691	7.1553829004003	6.72023407953303	6.95828631833046	7.141257023082	6.83332877570225	-0.000276765137036586	0.99906943323817	0.999532836539787
Merged-chr4-137388553-4	chr4	137388445	137388645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	21246.0	NM_001126318	242711.0	Mm.475541	NM_001126318	ENSMUSG00000078520	Cela3a	Gm13011	chymotrypsin-like elastase family, member 3A	protein-coding	6.7494682700855	6.64525546188286	6.94832960381497	6.67571250833309	6.67414929898243	6.52908122123952	6.39390091953022	6.99120183173904	-0.122721970539263	0.587156542813936	0.819073308396926
Merged-chr13-14022028-3	chr13	14021933	14022133	+	859.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178337, intron 3 of 16)	MMVL30-int|LTR|ERV1	17605.0	NR_130788	70430.0	Mm.260209	NM_178337	ENSMUSG00000039233	Tbce	2610206D02Rik|C530005D02Rik|pmn	tubulin-specific chaperone E	protein-coding	3.23902174727275	3.21663106256944	3.18294823583883	3.21652859213395	3.05639908315919	3.03587656945838	3.28021618525185	3.12231168739559	-0.347384090262798	0.528906463133324	0.785343954343553
Merged-chr10-8505807-4	chr10	8505708	8505908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	13017.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	5.5945902980949	5.55057316824677	5.28085895629355	5.52306699517642	5.3844553139661	5.57913509953245	5.48950085415299	5.4007464907346	-0.0627318444488726	0.819034279566151	0.930681321455107
Merged-chr6-34956459-4	chr6	34956352	34956552	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025573, intron 4 of 7)	intron (NM_001025573, intron 4 of 7)	21547.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	3.92207061486819	4.51290669604386	3.97606053764672	3.41187558375163	4.47147881028885	4.62219757235349	3.95893291709331	3.61737434312852	0.503064004427193	0.370866818152988	0.675068605253279
Merged-chr14-54781912-4	chr14	54781826	54782026	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016972)	promoter-TSS (NM_016972)	-40.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	4.85548954976227	4.83581196181395	4.81801701648257	4.96217116815545	5.07771093819818	4.91465522795443	5.2170213176972	5.02870683245278	0.368519497744391	0.240050564036225	0.550469043090672
Merged-chr4-59548677-4	chr4	59548606	59548806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144904, intron 1 of 14)	CpG	658.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	5.88322115525967	6.06306083020903	6.54422613962261	5.87739213058524	6.31774193295856	6.54119718065292	6.28020462802376	6.52435420023354	0.466572808624887	0.0707842311563803	0.285242270926058
Merged-chr19-43689684-4	chr19	43689586	43689786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053103)	promoter-TSS (NM_053103)	-3.0	NM_053103	93685.0	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	9.07142529719753	8.90435159325993	9.21999657096226	9.19339251603633	8.71181996348468	8.99311414600812	8.9819004474354	8.77661640467261	-0.292425099129733	0.0643907280116923	0.269619838175437
Merged-chr4-35225205-4	chr4	35225098	35225298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	intron (NM_001081343, intron 1 of 10)	682.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	7.67885164008815	7.75914115827914	8.05587164011023	8.06763285183631	7.87353329406414	7.88322507129719	8.03002579266493	7.82832362867813	-0.00398856140421513	0.982157856589659	0.99359030804712
Merged-chr1-171390312-4	chr1	171390172	171390372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005508, intron 1 of 11)	intron (NM_001005508, intron 1 of 11)	1312.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	7.53285171525017	7.80304324969168	7.39444376817171	7.37215857703628	7.24241068302498	7.32212816806194	7.32790404511162	7.06515803581542	-0.390230608685228	0.0454445718938874	0.218325188245342
Merged-chr8-61451071-4	chr8	61450987	61451187	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36647.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	6.16886636833608	5.96009412863594	5.60311900433116	5.92456528315926	6.18141839747967	5.86318318744354	5.89894365428147	5.38221431147807	-0.0886044820489901	0.761861958962341	0.90672517808069
Merged-chr8-115597325-4	chr8	115597218	115597418	+	989.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109576.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.23910267428157	5.02594105836587	4.87235849305337	5.04001468453688	5.31923317008239	5.04856753061998	5.06116624024752	4.94428775321778	0.120190113250792	0.702739448891954	0.880375437504276
Merged-chr17-25868555-8	chr17	25868418	25868618	+	912.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026633, exon 2 of 5)	exon (NM_026633, exon 2 of 5)	220.0	NM_026633	68241.0	Mm.328870	NM_026633	ENSMUSG00000025732	Mcrip2	9530058B02Rik|Fam195a	MAPK regulated corepressor interacting protein 2	protein-coding	3.90918932301993	3.79495806370005	3.95581634092433	3.64548738046847	3.64330357539947	3.76815520580569	3.69215284659931	4.08074465349027	-0.0504134828701608	0.914263421727784	0.967950384482346
Merged-chr4-125055472-4	chr4	125055353	125055553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145552)	TTS (NM_145552)	10204.0	NM_175223	75563.0	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	6.72836833968823	6.63447357253586	6.40933389832568	6.7534231485945	6.60109573562068	6.67374336228433	6.49756283992987	6.42284570415082	-0.135792147648247	0.524841516059585	0.78311175823405
Merged-chr2-130642885-4	chr2	130642786	130642986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197945)	promoter-TSS (NM_197945)	-42.0	NM_001291027	241638.0	Mm.440130	NM_197945	ENSMUSG00000037703	Lzts3	Prosapip1	leucine zipper, putative tumor suppressor family member 3	protein-coding	7.16306243165589	7.22066216242733	6.9211663024548	6.96789942832936	7.0376454183178	7.02958585561659	7.29307339499758	6.6648332404692	-0.061621398003786	0.77360556720793	0.91153187499357
Merged-chr9-4376377-4	chr9	4376276	4376476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145609)	promoter-TSS (NM_145609)	-176.0	NM_145609	78100.0	Mm.206549	NM_145609	ENSMUSG00000041124	Msantd4	8430410K20Rik|Mysantd4	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding	9.27832025917801	9.4408016790529	9.74736030118682	9.85511359139602	9.63733392410737	9.65841724140711	9.81533942399492	9.53342912023619	0.0736342260362007	0.671693383666799	0.864905117611895
Merged-chr12-21286841-3	chr12	21286727	21286927	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008403)	promoter-TSS (NM_008403)	530.0	NM_018813	54451.0	Mm.356778	NM_018813	ENSMUSG00000054309	Cpsf3	-	cleavage and polyadenylation specificity factor 3	protein-coding	3.87613335161184	3.87851990591139	3.61724740427741	3.83505145264251	3.51878644903333	3.79151653278604	3.81263278869845	3.7769345710464	-0.257481699522753	0.579406537547782	0.815357109114363
Merged-chr6-137455774-3	chr6	137455663	137455863	+	905.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 25 of 26)	intron (NM_011216, intron 25 of 26)	45042.0	NM_001164403	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	4.19209637379913	3.7249759751385	4.37881747033329	3.76495157347949	3.81286260093786	3.77181108088961	3.5764286915599	4.0185210203665	-0.64457030222029	0.193655010510727	0.49380480138203
Merged-chr3-146500666-4	chr3	146500585	146500785	+	978.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027617)	promoter-TSS (NM_027617)	849.0	NM_010318	14707.0	Mm.140804	NM_010318	ENSMUSG00000068523	Gng5	G(y)5	guanine nucleotide binding protein (G protein), gamma 5	protein-coding	4.3047600026716	4.3109434277159	5.16333412373254	4.403689981619	4.48867249558692	4.80824072906852	4.76313395884502	5.31223166984496	0.583917885128676	0.178138003111785	0.47385347507328
Merged-chr9-63989448-4	chr9	63989367	63989567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	32592.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	6.96154709338749	7.05686219732337	6.96276535952689	7.22445086130282	6.68159611071338	6.36034364649906	6.69733393594557	6.68126233011082	-0.631648007051514	0.00227937465042865	0.0258803012032
Merged-chr7-66079620-4	chr7	66079520	66079720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024439)	promoter-TSS (NM_024439)	-29.0	NM_001348246	109815.0	Mm.482127	NM_024439	ENSMUSG00000075701	Selenos	1500011E07Rik|C78786|H-4|H-47|H4|H47|Sels|Vimp	selenoprotein S	protein-coding	8.77431572729591	9.01771016413645	8.74226024443547	8.92324618424691	8.76024325576165	8.85027298494643	8.88341713369848	8.65827108243715	-0.102779725362192	0.498455832277439	0.767631774426384
Merged-chr9-60758057-1	chr9	60757957	60758157	+	805.799988	f0_balb.idr	Intergenic	Intergenic	-36385.0	NM_001357408	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	3.90672143245847	4.00212161075876	3.90732348379329	3.75584438396438	3.59674174929099	3.31277506755367	3.52763826298117	3.90488861249524	-0.87348530814832	0.0821228106200919	0.311117054891632
Merged-chr10-127590480-5	chr10	127590412	127590612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 12 of 88)	intron (NM_008512, intron 12 of 88)	30636.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	5.58016859743392	5.29618013616791	5.86342783057678	5.7409682070596	5.47222598102243	5.52718985937295	5.4436277785595	5.55057183965165	-0.245103923918234	0.384104724506946	0.685698991414525
Merged-chr2-148529048-2	chr2	148528948	148529148	+	635.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85513.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	3.33882604552448	3.22918624960967	3.39901980078829	3.43087691615563	3.28632411926395	3.6277634997828	3.69242898624356	3.66023090101801	0.712917469764344	0.167367305163222	0.45897046595057
Merged-chr10-41674488-4	chr10	41674402	41674602	+	980.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 8 of 47)	B4A|SINE|B4	41961.0	NM_001358562	75973.0	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	4.47853035407508	4.4600910014487	4.47924213926032	4.56309068560728	4.68232508400394	4.5245970100785	4.14174238384916	4.10354545415791	-0.229418195998134	0.565962616771921	0.807783748011785
Merged-chr18-37934973-4	chr18	37934856	37935056	+	986.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305981, intron 1 of 28)	CpG	520.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	4.72530819582558	4.18936851147543	4.36510237120151	4.68557963016672	4.57587467717992	4.44675664180978	4.59509606317819	4.65120808099537	0.111273706285436	0.769973035371762	0.909958354298316
Merged-chr5-137760256-4	chr5	137760161	137760361	+	858.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023910)	TTS (NM_023910)	14292.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	4.07675238145227	4.25439649818347	4.02826680317369	4.08695865346353	4.15102082646532	4.0456575113052	4.19568658352912	4.25425793725551	0.128149958542621	0.749267106953213	0.901235090931483
Merged-chr9-65598950-4	chr9	65598861	65599061	+	896.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11801.0	NM_001357527	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	4.47319370783678	4.73495067614641	4.30026620702916	4.11962765219718	4.30815813489382	4.75649168865824	4.23529079443635	4.42975009911689	0.0570706983631397	0.890438085587617	0.958997364311038
Merged-chr19-4147328-4	chr19	4147235	4147435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1328.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	5.96901790798067	6.49291926331489	6.33050481093578	5.90492147831576	6.36504061401657	6.12399393296382	5.96247093697941	6.09763732637485	-0.0541556337741704	0.837971077435628	0.938474063450959
Merged-chr18-67396718-4	chr18	67396607	67396807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026473, intron 3 of 3)	intron (NM_026473, intron 3 of 3)	5976.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	8.05153661288135	7.83225118319978	7.7189496978862	7.82991158063385	7.0414985873298	7.42861888474692	7.10799576750686	7.15115453570574	-0.90283849027521	1.34697455884899e-06	4.58518900642337e-05
Merged-chr10-89708965-1	chr10	89708865	89709065	+	787.0	f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	22602.0	NR_130956	69002.0	Mm.293947	NR_130956	ENSMUSG00000097383	1500026H17Rik	-	RIKEN cDNA 1500026H17 gene	ncRNA	2.0382143719629	1.91576836659568	1.95294189314416	1.72990001109474	2.35105475307436	2.51492198660114	2.32749227257917	2.68734588542282	5.72394087930131	6.97134571875688e-08	3.08590433405097e-06
Merged-chr14-87075324-2	chr14	87075227	87075427	+	832.099976	f0_balb.idr|f1_balb.idr	intron (NM_019670, intron 3 of 27)	ORR1C1|LTR|ERVL-MaLR	65897.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	4.09104831029682	4.10436854117538	4.40727289930954	4.54821696906933	3.30127155941227	3.522691834948	3.65897710611654	3.89641245520758	-2.08462453950282	5.44256846430391e-05	0.001217845271049
Merged-chr5-31767370-3	chr5	31767266	31767466	+	993.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 3 of 11)	MTD|LTR|ERVL-MaLR	69316.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	4.78378812338832	4.28150176329738	4.51103425324261	4.26813097371326	4.87079071459406	4.9554867528131	4.6522587815269	4.70907230240129	0.742458230527258	0.0425632869944582	0.209581528184532
Merged-chr10-95476138-3	chr10	95476048	95476248	+	794.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25801.0	NM_001359476	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	3.76722798650975	3.92191907099161	3.90459416158981	3.61775540139898	3.67176109986912	3.48718372874127	3.42737512253327	3.61103985257981	-0.768647112394279	0.11882868050072	0.3813389862111
Merged-chr11-119928432-4	chr11	119928314	119928514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 2)	intron (NR_039557, intron 2 of 2)	14604.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	5.96952858602132	6.26389332683398	6.37042178099163	6.44857016461955	6.28166844103944	6.02599240626831	6.13476328514144	6.25871917084849	-0.15666149497151	0.513686044251012	0.776626777135012
Merged-chr2-122301696-3	chr2	122301604	122301804	+	650.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025777, exon 5 of 6)	exon (NM_025777, exon 5 of 6)	2804.0	NM_025777	66811.0	Mm.171333	NM_025777	ENSMUSG00000027225	Duoxa2	9030623N16Rik|Nip2	dual oxidase maturation factor 2	protein-coding	3.77023656464346	3.30361551777647	3.53060814462522	3.59678654956652	3.59873393127224	3.20541425316924	3.40744809973983	3.4746655617111	-0.411746898326372	0.438664358709424	0.72663929226386
Merged-chr16-38400092-3	chr16	38400005	38400205	+	997.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134102, intron 9 of 10)	intron (NM_134102, intron 9 of 10)	33040.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	4.39119759071586	4.22372584041724	4.28014794336522	4.49479959061298	3.56831381650196	3.47314333554235	3.74248628802751	3.6331856863779	-2.21543013345011	4.2554739436615e-06	0.00012856552624613
Merged-chr11-31891238-3	chr11	31891150	31891350	+	918.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290678, intron 2 of 7)	L1MD2|LINE|L1	20310.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	3.46636136550111	3.89883176805249	3.46679092636016	3.86594047899123	3.3316064956444	3.95583507801486	3.56903263927637	3.52433121262134	-0.275486146740292	0.605854668820128	0.829166672536444
Merged-chr8-82372991-3	chr8	82372912	82373112	+	789.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	29574.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	3.78323055957393	4.47327817128732	3.73183595173445	3.1424714047433	3.84065079711154	3.80074817275237	3.54856356746958	3.22286171980568	-0.726314685395093	0.248104265089386	0.559186294982657
Merged-chr8-25062136-4	chr8	25062041	25062241	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 5 of 11)	intron (NM_031257, intron 5 of 11)	-23179.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	5.09626715896044	5.06795268145574	5.22472988182327	5.29105502247385	5.1649272405138	5.20314822584014	4.93191884071146	5.28033010404325	-0.0580863705838321	0.847794494332471	0.942466137407908
Merged-chr7-30608074-3	chr7	30607963	30608163	+	621.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026815, intron 3 of 7)	intron (NM_026815, intron 3 of 7)	4671.0	NM_026815	109637.0	Mm.25471	NM_026815	ENSMUSG00000006313	Upk1a	1110031P12Rik|AU019298|C87192|Tspan21|Upk1	uroplakin 1A	protein-coding	3.41652216174278	3.55748076719429	3.17121870393306	3.0704677198596	3.54556568875597	3.35036461411721	3.65377174285732	3.46988982219508	0.691926504638618	0.19813694886929	0.499617813340272
Merged-chr19-6978477-3	chr19	6978381	6978581	+	840.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008020, intron 3 of 5)	intron (NM_008020, intron 3 of 5)	911.0	NM_001360288	14227.0	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	2.96963837211293	3.02155553203639	3.13950088491709	3.00702931233399	3.09828871182159	2.72989462533758	2.83458909379519	2.96853954697504	-0.474752863373239	0.440682004994932	0.728066857775324
Merged-chr11-114229454-2	chr11	114229354	114229554	+	984.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	31196.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	2.39709060620582	2.48603084395965	2.69180519479403	2.42112638335756	3.20620105472813	2.80039325343111	2.86491203357819	2.75501761344359	2.1143964076415	0.00206658435492342	0.0239809442068846
Merged-chr7-78783018-4	chr7	78782904	78783104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026498)	promoter-TSS (NM_026498)	85.0	NM_023331	67308.0	Mm.193181	NM_023331	ENSMUSG00000030612	Mrpl46	3110052F15Rik|C15orf4|C80107|LIECG2|P2ECSL	mitochondrial ribosomal protein L46	protein-coding	6.20620970351329	6.03613274961866	6.75348241463573	6.18982179693068	6.16913295063496	5.94764905610958	6.33947999427002	6.14277574149611	-0.24090609919602	0.360392320525833	0.665793074685122
Merged-chr15-50697919-4	chr15	50697808	50698008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	191141.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	7.30509465870298	7.48822785352103	7.069365475519	7.22987616986142	7.34738717218143	7.43068360169115	6.99612972244411	7.06439449629016	-0.0775572287723092	0.703933435940289	0.880925455128412
Merged-chr5-64297271-4	chr5	64297164	64297364	+	946.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	L1MB2|LINE|L1	66907.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.69071527893153	4.61923521160622	4.572467448866	4.84754011107705	4.62348439536413	4.42446586423979	4.77721415819074	4.72566369407066	-0.11593988323594	0.742382169558318	0.898494026733066
Merged-chr7-43671895-4	chr7	43671788	43671988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145582)	promoter-TSS (NM_145582)	-143.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	8.30356195774281	8.39319428671228	8.31049373106253	8.28862133749931	8.257467994084	8.19406613094113	8.6683965509109	8.31061612416762	0.0593752704394355	0.726601258485007	0.891163788217188
Merged-chr1-127084102-4	chr1	127083936	127084136	+	932.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120950.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	4.2200304601648	4.19820857824192	4.7109102488605	4.87027468779872	4.68283764778786	4.59810636103492	4.79410115884545	4.94350838151565	0.441484397292032	0.274120088671312	0.585845782661322
Merged-chr9-63132280-3	chr9	63132187	63132387	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14693.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	3.69762530024321	3.97599614379645	4.06308781836229	4.02380446681575	3.82543517305895	4.31850051018435	3.79814706305922	4.06056961227017	0.158210616108988	0.727288957721502	0.891423086495076
Merged-chr15-101298170-4	chr15	101298065	101298265	+	939.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_033803)	TTS (NR_033803)	4953.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	4.31856681103342	4.39692094786401	4.40561317764099	4.5547650783445	4.37285816622099	4.08517873781368	4.46570086315373	4.40282613315989	-0.209540205697067	0.585268897790019	0.818043296530108
Merged-chr7-80198436-4	chr7	80198346	80198546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360135)	promoter-TSS (NM_001360135)	5.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	6.51186798268453	6.42177970890408	6.57764787744337	6.9253302276767	6.50525467421545	6.37232780061327	6.49613667546356	6.47478342231244	-0.257367954945438	0.26101430258171	0.572926972283513
Merged-chr14-51063501-4	chr14	51063388	51063588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6246.0	NM_001011875	497106.0	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	6.16133595830795	6.40570096211811	6.43134605299821	6.36607545425537	6.72153462671019	6.53641379125592	6.49769487092755	6.42674951521556	0.308723021525095	0.156120885055397	0.442008212774276
Merged-chr17-63493320-4	chr17	63493219	63493419	+	911.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 1 of 8)	intron (NM_015794, intron 1 of 8)	7261.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	4.75869679203143	4.54483233441625	4.3290523761636	4.63166050692346	4.63629502539266	3.95135003822146	4.66873469058032	4.230046033219	-0.365441409515841	0.385865590498854	0.687291098196235
Merged-chr10-121305652-3	chr10	121305550	121305750	+	914.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361015, intron 4 of 12)	intron (NM_001361015, intron 4 of 12)	5746.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	3.41261959554394	3.87202531086204	3.74776710764133	3.96090608104864	3.2245775231269	3.5283760828352	3.77939782533252	3.64339117492429	-0.677933086299595	0.204292949070487	0.507481252945077
Merged-chr7-80123852-3	chr7	80123739	80123939	+	799.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8489.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	3.68259897996652	3.62277442914571	3.52773788937713	3.54072835928346	3.56653791109001	3.64323325904834	3.45862676480881	3.41098965810104	-0.220676683191098	0.64971822359739	0.852874989625233
Merged-chr19-24336601-3	chr19	24336491	24336691	+	961.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008846, intron 13 of 14)	intron (NM_008846, intron 13 of 14)	-56005.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	3.29585254686733	3.48907660377022	3.85762960931544	3.58765744599163	3.23413276942019	3.59128648500584	3.46167744340628	3.35695649790758	-0.541301276831377	0.309268212141049	0.621622697166796
Merged-chr11-83663200-1	chr11	83663100	83663300	+	564.0	f0_balb.idr	intron (NM_013652, intron 1 of 2)	B2_Mm2|SINE|B2	616.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	3.7082469390433	4.41165254078662	4.1007644563346	3.15075849982509	4.19915079309314	3.83191579972985	3.51321842206337	3.64847409639905	-0.295690107913161	0.623362643847307	0.838941930944268
Merged-chr8-123005245-3	chr8	123005149	123005349	+	944.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	37035.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	3.82147255971892	3.28597198278262	3.25878629725694	3.63409690727594	3.91807921379181	3.68772169908583	3.55651169983059	3.77325512756534	0.672056524974888	0.200183586932261	0.502233531925254
Merged-chr8-124230074-4	chr8	124229996	124230196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1298.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	6.6972380303289	6.56028174603223	6.42773875850464	6.30795399490544	6.69339171002074	6.19134571879854	6.78636316362864	6.63504934682417	0.153724768664897	0.513647018579914	0.776626777135012
Merged-chr17-33629089-1	chr17	33628989	33629189	+	1000.0	f0_c57.idr	promoter-TSS (NM_026712)	promoter-TSS (NM_026712)	-3.0	NR_034153	328801.0	Mm.181488	NM_026712	ENSMUSG00000073423	Zfp414	0610030H11Rik|Znf414	zinc finger protein 414	protein-coding	6.02501348462288	6.1138507014527	5.23639341869277	5.70267996479415	6.09896585055728	6.46435631275233	5.90844321191912	6.08335513444682	0.535318088957043	0.0727205587271084	0.290114135287882
Merged-chr12-34663250-2	chr12	34663147	34663347	+	635.0	f0_balb.idr|f1_balb.idr	intron (NM_001271386, intron 3 of 27)	L1_Mus4|LINE|L1	-134358.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	3.64619629426652	3.40393676139167	3.55269879715412	2.6784995206715	3.3676030009189	3.20274741917091	3.26931014011438	3.28020345982934	-0.338150762695337	0.604640420119414	0.828509474255204
Merged-chr12-111675290-4	chr12	111675169	111675369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2836.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	6.0068348469329	6.28929334741324	5.70676902533295	6.41218966324493	6.01503896442684	6.22784564045275	6.2903636262531	6.13100168492461	0.0204096591481174	0.93867095886792	0.977759950372676
Merged-chr16-8830643-3	chr16	8830544	8830744	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081400, exon 1 of 4)	exon (NM_001081400, exon 1 of 4)	544.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	5.80577612892796	6.07890676244757	6.35085154612758	5.50156033086027	5.93295196152254	5.8532179285656	5.98455507726532	6.34628301012221	0.131883431555865	0.656261681314074	0.856569188570631
Merged-chr9-61389604-4	chr9	61389499	61389699	+	769.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083928, intron 4 of 19)	intron (NM_001083928, intron 4 of 19)	17233.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	4.20011467650316	3.85904803162212	3.68427471510774	4.08641751074603	3.95041463480412	4.23835499640912	3.84607522369016	4.4988502824911	0.462193918643183	0.322362719503322	0.633942634212845
Merged-chr12-112941976-4	chr12	112941829	112942029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316724, intron 1 of 4)	CpG	213.0	NM_025399	66174.0	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	6.63199657712835	6.44065562049368	6.42336241458981	6.0431979182721	6.24505092156677	6.61707750521821	6.64285913292585	6.7282747935309	0.260842896875745	0.293371634399754	0.605957446532024
Merged-chr5-25099731-3	chr5	25099602	25099802	+	870.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 1 of 15)	CpG	940.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	3.75122350909245	3.51246357552893	3.60648212017593	3.76057113704713	3.10029425547764	3.49784012932147	3.30933859760778	3.60437479259963	-0.952243067019013	0.0756701577935789	0.297149186891159
Merged-chr11-69666748-2	chr11	69666648	69666848	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291058)	promoter-TSS (NM_001291058)	-578.0	NR_110993	12514.0	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	4.31502798223723	4.31092421862735	4.31571381578769	3.80222895633756	4.10497570494714	4.35557727990024	4.06595706257032	4.54516567192196	0.21801829697194	0.617831820286143	0.835731112257238
Merged-chr10-78425707-4	chr10	78425612	78425812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007793)	promoter-TSS (NM_007793)	42.0	NM_007793	13014.0	Mm.6095	NM_007793	ENSMUSG00000005054	Cstb	AA960480|Stfb	cystatin B	protein-coding	6.98907665090055	7.34769070398281	7.01573594603535	6.96501398878711	6.95644103923325	7.26583819067998	6.88932298368212	7.33106597655419	0.0441693257382602	0.83527321530815	0.937285789387356
Merged-chr2-5012816-4	chr2	5012709	5012909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305259)	promoter-TSS (NM_001305259)	-18.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	7.30733505995068	7.50023408131393	7.00526016695011	7.12597605067291	7.37625429068843	7.33173375639602	7.62891572126779	7.02642466611937	0.152383515759955	0.476736947040119	0.753110052062842
Merged-chr8-121652993-4	chr8	121652904	121653104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-14599	-1071.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	8.53778424905499	8.61865755785157	8.4707623344337	8.58940294879373	8.29897825023281	8.46490018248202	8.76381482047034	8.22224806195393	-0.131001061413362	0.451918705413636	0.736343134874995
Merged-chr11-84880320-4	chr11	84880215	84880415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025414)	promoter-TSS (NM_025414)	-30.0	NM_001077636	70325.0	Mm.390414	NM_027388	ENSMUSG00000045140	Pigw	2610044A17Rik|Gwt1	phosphatidylinositol glycan anchor biosynthesis, class W	protein-coding	5.85654011397269	5.58075085683088	5.37813358859549	5.61471660893787	5.92180558027618	5.98591172185274	5.71236832371281	5.52648600109991	0.305905199164569	0.265177686781649	0.576956662317123
Merged-chr16-91647784-4	chr16	91647692	91647892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178880)	promoter-TSS (NM_178880)	-32.0	NM_019973	20658.0	Mm.46401	NM_019973	ENSMUSG00000022961	Son	2900011L12Rik|AA409051|AU067731|C81487|mKIAA1019|nrebp	Son DNA binding protein	protein-coding	7.96846812230563	8.14439073186367	7.73192602687585	7.86968695099283	8.27894459108861	8.14038743338423	8.25505349491954	7.95744404875586	0.295359069208639	0.0930523078586421	0.333716294940811
Merged-chr7-19629497-4	chr7	19629348	19629548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009046)	promoter-TSS (NM_009046)	-10.0	NM_009046	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	7.06701443696004	7.06282983716083	6.57302064781673	6.75792663682696	6.92218057895923	7.27889793534676	6.96069005901554	6.90131236853531	0.197859644922842	0.365341130836655	0.670036077799093
Merged-chr6-113379495-4	chr6	113379412	113379612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170485, intron 1 of 3)	intron (NM_001170485, intron 1 of 3)	1399.0	NM_001170486	68089.0	Mm.289306	NM_026552	ENSMUSG00000079426	Arpc4	20kDa|5330419I20Rik|AI327076|p20-Arc	actin related protein 2/3 complex, subunit 4	protein-coding	5.69280295658456	5.90116457993776	5.61423140203177	5.72807639914716	5.83463332312755	5.55359898774709	5.9392356164549	5.83518742071851	0.10146612612079	0.694124927151462	0.87574740044461
Merged-chr12-74009651-1	chr12	74009551	74009751	+	549.0	f0_balb.idr	intron (NM_172804, intron 1 of 6)	intron (NM_172804, intron 1 of 6)	11890.0	NM_172804	238266.0	Mm.311393	NM_172804	ENSMUSG00000044912	Syt16	6430703N11|Strep14|Syt14l|syt14r	synaptotagmin XVI	protein-coding	3.22107752620838	2.83985550836598	3.00087096632836	2.92490073649838	2.59942885488103	3.33711470497093	2.79797185087672	2.7343865029729	-0.446381103679936	0.514157695396024	0.776908938806569
Merged-chr2-12419486-4	chr2	12419388	12419588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_149732)	promoter-TSS (NR_149732)	-28.0	NR_149731	66960.0	Mm.34059	NM_024185	ENSMUSG00000026767	Mindy3	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958|Fam188a	MINDY lysine 48 deubiquitinase 3	protein-coding	7.20801700268717	7.06923928418886	6.91520694609982	7.15692798327043	7.27731178899866	7.27183503182582	7.17316852248891	7.19325588762614	0.183226331852179	0.319747167640102	0.631588279324402
Merged-chr8-106893204-3	chr8	106893084	106893284	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011574)	promoter-TSS (NM_011574)	409.0	NM_145412	214987.0	Mm.490308	NM_145412	ENSMUSG00000046691	Chtf8	5830457O10Rik|Ctf8|Derpc	CTF8, chromosome transmission fidelity factor 8	protein-coding	5.62580215734222	5.33835589395605	6.02861508046657	5.39274825516951	5.18698374666158	5.49430847988986	5.25882492905455	5.57187885477172	-0.403969052256849	0.198482080435409	0.500021711463428
Merged-chr7-110004659-3	chr7	110004556	110004756	+	803.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037959, intron 1 of 2)	MIR|SINE|MIR	1990.0	NR_037959	69781.0	Mm.440728	NR_037959	ENSMUSG00000101585	1600010M07Rik	-	RIKEN cDNA 1600010M07 gene	ncRNA	3.65048996837987	3.46499355306379	3.43966306208485	3.86403936189959	3.5641085345085	3.55368999816832	3.24488295126525	3.31789158721681	-0.647453876458019	0.22508201609492	0.533502988868384
Merged-chr8-121949001-2	chr8	121948901	121949101	+	728.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1491.0	NM_016812	53325.0	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	3.11716568127988	2.95395404644321	3.11759413515725	2.94581227748024	2.79275762136068	3.04619903797039	3.10520505595664	2.99871428796246	-0.190343192751796	0.747373168383348	0.900560236507876
Merged-chr9-73116960-3	chr9	73116836	73117036	+	873.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198609, intron 3 of 5)	(T)n|Simple_repeat|Simple_repeat	3467.0	NM_198609	225215.0	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding	3.79095102393304	3.34174067831433	3.10737264216234	3.15535260470906	4.06067016844628	3.86465714734322	3.77451124130196	3.97031142785152	1.737320325218	0.0011047664541592	0.0145460916464295
Merged-chr9-90272738-4	chr9	90272652	90272852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1983.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	7.28588258658252	7.131228882677	7.52171970322258	7.63230403295848	7.86179914636755	7.64227865065216	8.05508287363231	7.80577176963396	0.570970605877145	0.00406923796199736	0.0405948547858458
Merged-chr10-20835412-4	chr10	20835307	20835507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-110329.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	8.00844471877476	7.99420356610537	7.57356109864643	8.12875190551456	8.14861425611559	7.92792052577533	7.99130541722202	8.06323306894762	0.112370835402823	0.541006483444988	0.793009827469438
Merged-chr2-24355565-4	chr2	24355471	24355671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10200.0	NM_001039701	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	5.26200781959171	5.3109299497958	5.62123514633587	5.393560808593	4.99783178957724	5.30639585404139	5.63933269262501	5.40921297638916	-0.0948154240906978	0.758416713991944	0.905135209683573
Merged-chr3-126945055-3	chr3	126944952	126945152	+	993.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001327939, exon 37 of 46)	exon (NM_001327939, exon 37 of 46)	-1666.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.24693325436687	3.48155254186711	3.24729223173773	2.84370880581919	4.86380246770408	4.20856042036325	4.84909197821206	4.40913858158894	4.41654398167681	5.60915888441183e-16	1.07326430170309e-13
Merged-chr9-40807811-4	chr9	40807730	40807930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6557.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	6.85311154935745	7.06458931524712	6.93609667984881	7.09687241360668	7.29580489149437	7.09955719217472	7.14050240512038	6.84948744912245	0.157302500940431	0.433775770804286	0.723256357491443
Merged-chr17-32389417-4	chr17	32389307	32389507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033525)	promoter-TSS (NR_033525)	32.0	NR_033525	22404.0	Mm.274948	NM_011717	ENSMUSG00000024050	Wiz	-	widely-interspaced zinc finger motifs	protein-coding	6.39072639159184	6.50706688563504	6.44478351874178	6.49029296820777	6.56260937462397	6.63776562972756	6.5577272774779	6.27436955133954	0.0790854321625768	0.711504096442014	0.884444038361993
Merged-chr13-119429529-4	chr13	119429394	119429594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145457, intron 1 of 10)	CpG	592.0	NM_145457	218693.0	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	5.47194719581222	5.62679435255816	5.77827674060066	5.35865965708714	5.53957182013381	5.59006795780555	5.41668139352531	5.72816873345265	0.0295109630339234	0.91560558163047	0.968753005542634
Merged-chr7-101553498-4	chr7	101553401	101553601	+	988.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007490, intron 2 of 2)	intron (NM_007490, intron 2 of 2)	2301.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	5.20035610317832	6.25777993813481	5.30582731500461	5.49726704419596	5.85243283520787	5.99702587136289	5.70114269031152	5.08432926316367	0.102227767462632	0.784449810588334	0.916076100794651
Merged-chr15-101224164-4	chr15	101224080	101224280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019518)	promoter-TSS (NM_019518)	-27.0	NM_019518	56149.0	Mm.276573	NM_019518	ENSMUSG00000000531	Grasp	tamalin	GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein	protein-coding	6.40781952651993	6.11996557317906	6.28436082345513	5.93007179722978	6.43499969914279	6.14591349257118	6.87016122397204	6.03287243405089	0.345587036289646	0.210799343402737	0.515470506828542
Merged-chr10-37106436-4	chr10	37106342	37106542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32484.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	5.20734809524077	5.54051193509266	5.10645142762752	5.42774483570023	5.3489381119756	5.38330302744683	5.47072491525425	5.06726868604579	-0.0290529152938883	0.92306634773415	0.971505834176683
Merged-chr10-78370498-3	chr10	78370404	78370604	+	734.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-18804.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	3.59637314939456	3.82971212740191	3.29319607386939	3.03296911320819	3.71377883761706	3.82222140813589	3.73369400934179	3.59481633727467	0.780718856627192	0.157608268506768	0.444255436281969
Merged-chr7-100208027-4	chr7	100207900	100208100	+	875.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19607.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	4.43965877172645	4.74994311821042	4.18543185653776	4.14418782588792	4.13417422898207	4.16134548370457	3.96653639790889	4.08543302934988	-0.767265013239303	0.0744152442323738	0.294018547796624
Merged-chr10-117437392-4	chr10	117437306	117437506	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10029.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	4.5824705136234	5.70526742600981	5.42589429111125	4.41782253992683	5.08917315125551	4.76612417305966	4.36806613159622	4.43616060789718	-0.872627650827782	0.0667585483923442	0.275514971648325
Merged-chr2-94178934-4	chr2	94178835	94179035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21026.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	5.41609309114891	5.69872771445854	5.65315702419337	5.79102293952458	6.0514353427569	5.56533215612278	6.52229533962708	5.64915189191594	0.571546310166668	0.0671324725864669	0.276401102859332
Merged-chr12-82189979-4	chr12	82189875	82190075	+	858.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	19959.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	4.40293221520523	4.06115255777714	3.92967628546632	4.19480453018838	4.16113027508292	4.57256115886513	4.25949488684658	4.3190162843276	0.416404610541202	0.309800638469116	0.621980972835618
Merged-chr13-43496811-4	chr13	43496729	43496929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15856.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	5.51435166149842	5.36004828057129	5.36595031962399	5.52524192610794	5.9671627649833	5.98757464225639	5.59489420027499	5.45382591069593	0.552262232349573	0.050319500374232	0.232743629679476
Merged-chr17-26234679-4	chr17	26234575	26234775	+	941.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	B2_Mm2|SINE|B2	9567.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	5.3505924953524	5.14980779171662	4.58427502439256	4.43332842723276	5.26424862110629	5.49660724814306	5.14870195694064	5.50266874179878	0.814280312480414	0.0286968391116353	0.162693135095746
Merged-chr11-97997546-4	chr11	97997445	97997645	+	962.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1372.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	5.55820312578368	5.8406899384203	5.55918360607915	4.78152051502424	5.74841463900896	5.83327756075206	4.90710773015808	5.35747929712934	0.0465465644402484	0.903473685680582	0.964287824952031
Merged-chr10-111503260-4	chr10	111503163	111503363	+	785.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2475.0	NR_033603	382421.0	Mm.245643	NR_033603	ENSMUSG00000111997	Gm5176	EG382421	high mobility group box 2 pseudogene	pseudo	3.91160556572539	3.95908036618433	3.75621448635328	3.71246645154324	4.00177140032791	4.08298470881744	3.56698542935258	4.09176880725437	0.33746213561257	0.461960349345393	0.743511597372954
Merged-chr7-111370753-4	chr7	111370627	111370827	+	949.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-248052.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	4.55579328926911	4.71696918584763	4.60041738799699	4.46223400604686	5.13666769648309	4.85938101404783	5.04086355355359	4.93680461339751	0.881222528784597	0.00741157450986043	0.0634659457904282
Merged-chr5-100821702-3	chr5	100821624	100821824	+	819.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172405)	promoter-TSS (NM_172405)	-789.0	NM_172405	70681.0	Mm.486560	NM_172405	ENSMUSG00000035234	Abraxas1	3830405G04Rik|5630400M01Rik|AI506069|AL024423|AV118690|Ccdc98|Fam175a	BRCA1 A complex subunit	protein-coding	3.3968343892486	3.26465124687475	3.49686603253802	3.11126998661692	2.98745935672411	3.28409752372228	3.03255977572277	3.28749351354918	-0.638830190211652	0.266126063929067	0.577870259438897
Merged-chr8-14890102-4	chr8	14890009	14890209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	1573.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	7.58265067488355	7.62127074823339	7.78442085707067	8.09608636009892	7.76937029880952	7.5870676451731	7.85702998941831	7.74789047303993	-0.0712304620458635	0.712428782771973	0.884871428029492
Merged-chr13-111805358-4	chr13	111805254	111805454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	(TC)n|Simple_repeat|Simple_repeat	3639.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	6.94057048907663	6.99618674416233	6.82685898725882	6.86097415808517	6.43577961927762	6.31075859402926	6.47552789634664	6.5874442041369	-0.645328556649839	0.0015673270119333	0.019361466397501
Merged-chr19-32087879-2	chr19	32087787	32087987	+	734.333374	f0_balb.idr|f1_balb.idr	intron (NM_018830, intron 2 of 23)	L1_Mur3|LINE|L1	15253.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	2.92700179962461	3.08249982279245	2.92741745950795	3.26028304270461	2.33779604826706	2.47330516736973	2.52526938334473	2.60500099872862	-3.86670960512951	7.8703637360221e-05	0.00165642998334216
Merged-chr10-68264082-4	chr10	68263982	68264182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	14644.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	5.30463947401141	5.14195889986901	5.52267674897082	5.20121801158151	5.22483629572475	5.18397021676122	5.18783723749076	5.33111270590126	-0.103987865677325	0.723772918225246	0.889750263763405
Merged-chr10-22731864-2	chr10	22731764	22731964	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011603)	promoter-TSS (NM_011603)	-417.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	5.43788968434646	5.69816351663055	5.91724356160271	5.8144620152329	5.69197384933015	6.02407552832156	5.86476313347143	6.29183817761773	0.394480316718332	0.155188495112912	0.440817750658429
Merged-chr3-108017509-4	chr3	108017370	108017570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010358, intron 1 of 7)	intron (NM_010358, intron 1 of 7)	503.0	NM_010358	14862.0	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	6.27946361480328	6.24899945876051	5.84635469386381	5.73121095729164	5.89193508495305	6.36430174100529	6.19498102541644	5.59873125775622	-3.95955938917407e-07	0.999998921304871	0.999998921304871
Merged-chr7-64356772-4	chr7	64356677	64356877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177893, intron 8 of 13)	intron (NM_177893, intron 8 of 13)	17318.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	7.13500621673218	6.68166819803548	7.95980450012779	8.00543330738732	6.91864789154975	6.89737413787342	7.35650062322309	7.17787546483653	-0.625838197452678	0.0388567029536927	0.198008394869766
Merged-chr4-43394650-4	chr4	43394542	43394742	+	906.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 1 of 11)	intron (NM_001037709, intron 1 of 11)	-11860.0	NM_199057	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	4.33772315308919	4.48036693560755	3.91585230871599	5.06787899941648	4.41186447908615	4.6392546170284	4.2735149109075	4.14127020114053	-0.353618262844219	0.45981108081073	0.742271214480192
Merged-chr2-94144852-4	chr2	94144758	94144958	+	928.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019657, intron 1 of 10)	intron (NM_019657, intron 1 of 10)	13051.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	4.76250937278146	4.48676627963244	4.54716123518143	4.40613191836988	4.38309788492469	4.36513862206286	4.3147994718047	4.54420058599507	-0.326239532456941	0.381698490025238	0.683873258696798
Merged-chr4-117545754-4	chr4	117545665	117545865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-4559.0	NM_001356404	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	7.82830301138707	7.76261889115501	8.14532649950474	7.84918175477382	7.81636139411208	7.32974410576974	7.82118793624482	7.73113460194217	-0.269542850658533	0.161934354265665	0.450986986551208
Merged-chr1-45880688-2	chr1	45880588	45880788	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	44906.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	2.97593467299813	3.10612595011938	2.90662670543017	2.98665255716879	3.16866250721037	3.27823758846909	3.31706079788579	3.42850348706351	1.16657504459237	0.0354623710044094	0.186934602625335
Merged-chr3-8735043-3	chr3	8734930	8735130	+	571.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67992.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	3.07998798633763	2.81461792559109	2.90952939391313	3.12493788486759	2.67130572923163	2.81760276221196	2.77309862068364	2.96752015168273	-0.846646689627488	0.183053674645844	0.479931670936247
Merged-chr1-77826368-4	chr1	77826277	77826477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-311289.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	5.87621925679374	5.68825352288601	6.303016870262	6.24834081829417	6.06096632837749	5.9020824950951	6.23600487755042	5.96597523171984	-0.021133210924034	0.936965882799057	0.977204440107264
Merged-chr11-61142465-4	chr11	61142362	61142562	+	861.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021349, intron 2 of 3)	intron (NM_021349, intron 2 of 3)	1627.0	NM_021349	57916.0	Mm.265915	NM_021349	ENSMUSG00000010142	Tnfrsf13b	1200009E08Rik|Taci	tumor necrosis factor receptor superfamily, member 13b	protein-coding	3.90567173950262	4.16832139227817	3.6467500462482	4.08888328293976	3.72648257135523	3.43848365333941	3.88932330552985	3.58624162509259	-0.880295344152805	0.075860607012355	0.297568728454338
Merged-chr13-97196984-3	chr13	97196851	97197051	+	835.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010422, intron 1 of 13)	intron (NM_010422, intron 1 of 13)	1406.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	3.17026723235472	3.16923769191408	3.48981811169875	3.31127636541074	3.28676509250131	3.15258723348915	3.21777443344843	3.04253685112736	-0.410617134150145	0.460609787913314	0.742687499720882
Merged-chr6-113333264-4	chr6	113333175	113333375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133926)	TTS (NM_133926)	6299.0	NM_010957	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	6.0960239370977	5.8644176140426	5.72291015772356	6.22945125831202	6.08841538729213	5.81809191165193	6.16269003515688	6.28022661265264	0.141627121928706	0.588256935219301	0.819660566752303
Merged-chr14-73222723-4	chr14	73222620	73222820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	-15171.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	7.80793098251034	8.04629723319307	8.42119854147442	7.99512043410819	7.54781753294358	7.67532943358386	7.49894769816887	7.62276088595226	-0.649099022850101	0.000662578030831679	0.00965833333126523
Merged-chr14-30825630-4	chr14	30825512	30825712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028839)	promoter-TSS (NM_028839)	18.0	NM_028839	69179.0	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	5.67826809659379	6.04158217094063	5.85733183916242	5.71626622707882	5.82605785720314	6.18765618483326	6.0437002702097	6.02992134984263	0.307678066550749	0.224771162385218	0.53323724482868
Merged-chr12-3283164-4	chr12	3283070	3283270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	intron (NM_016676, intron 1 of 5)	26799.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	5.36772487236903	5.34836730199953	5.09753194320966	5.27497631364259	4.98551561043623	5.13202342437974	5.07278730333762	4.98921091789906	-0.443974610519573	0.137287756547014	0.41207747420342
Merged-chr4-59438634-4	chr4	59438516	59438716	+	934.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163288)	promoter-TSS (NM_001163288)	17.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	4.71736099086392	4.92196484056179	5.10979570063494	4.6736876810647	4.21759649537231	4.73186169710482	4.53441636708678	4.75266584390747	-0.630009697037389	0.0945001252200568	0.336321220651921
Merged-chr12-71981446-4	chr12	71981351	71981551	+	888.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026102, intron 22 of 25)	intron (NM_026102, intron 22 of 25)	89540.0	NM_181752	238252.0	Mm.390508	NM_181752	ENSMUSG00000043398	Gpr135	PAFR	G protein-coupled receptor 135	protein-coding	4.36714792309962	4.6895150830311	4.26672344244821	4.22054573302319	5.31779646920815	4.91852371066379	4.60984577415558	4.58830506373026	1.09039606208851	0.00583369401426618	0.053209926441699
Merged-chr7-44850410-4	chr7	44850321	44850521	+	997.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_030488)	TTS (NR_030488)	414.0	NM_001253920	67605.0	Mm.148007	NM_026270	ENSMUSG00000011096	Akt1s1	1110012J22Rik|AI227026|Lobe|Lobel|PRAS40	AKT1 substrate 1 (proline-rich)	protein-coding	5.20357037294943	5.15393983629827	5.43209328191939	4.96937125072081	5.15879499149127	4.89982042713511	5.20933559086173	5.40199197550618	-0.00718607615612347	0.981944124791072	0.993557662139163
Merged-chr12-100837429-4	chr12	100837320	100837520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145448, intron 3 of 12)	ORR1F|LTR|ERVL-MaLR	58363.0	NM_145448	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	5.59895391702943	5.70056798688844	5.13043075083504	5.49050909066867	6.13155657198923	6.05250721460233	6.16392739439267	6.11919373255153	0.997682225417367	0.000128955689415577	0.00251271202214928
Merged-chr9-105034640-3	chr9	105034581	105034781	+	819.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357439)	TTS (NM_001357439)	-18587.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	3.60660725704411	3.68026113597312	3.28880070088897	4.06637618892518	2.81093473469472	2.9833538057584	3.01535636147153	3.02309477866018	-3.26921764067149	5.64170389136758e-06	0.000164983911784574
Merged-chr16-57915417-3	chr16	57915336	57915536	+	745.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160699.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	3.71810697156253	3.48178314527074	3.94340347797215	3.83098407789868	3.31260041882694	3.62134252539402	3.54781514471695	3.38170709798577	-0.945140866405106	0.0643977627383913	0.269633432585644
Merged-chr7-126694784-3	chr7	126694689	126694889	+	879.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029420, intron 1 of 5)	MTC|LTR|ERVL-MaLR	994.0	NM_029420	75764.0	Mm.280573	NM_029420	ENSMUSG00000059772	Slx1b	1110030E23Rik|2410170E21Rik|4833422P03Rik|AI853643|Giyd1|Giyd2	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	protein-coding	3.75197903953876	3.51323000860808	3.14359167960018	3.39097534359076	3.4145336416403	3.45362183562093	3.59749175818055	3.39738207487882	0.00888506518366167	0.986632216277333	0.99513248391555
Merged-chr11-106093329-3	chr11	106093229	106093429	+	849.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 1 of 15)	MIRc|SINE|MIR	8427.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	3.25962881472209	3.74300708451839	2.84864463268561	3.1205093942856	3.25594585997141	3.48909536402296	3.18804230405423	3.2583280463415	0.0583823307052947	0.926194125102484	0.972841419453261
Merged-chr8-33733043-6	chr8	33732956	33733156	+	977.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167922, intron 1 of 7)	intron (NM_001167922, intron 1 of 7)	717.0	NM_001167922	68153.0	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	4.63792729261118	4.54145186756028	4.78686407786236	5.11587033283834	4.34573836387925	4.73169218799027	4.40604566698224	4.51216297805316	-0.670391565999548	0.0793430365360749	0.304960202905193
Merged-chr4-45529392-2	chr4	45529341	45529541	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	1387.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	3.36048305513613	3.13884043899445	3.36091731623587	3.2670218944435	3.51965693466572	3.47521350891009	3.65344815224111	3.47054109982303	0.862301915619328	0.0871050338787127	0.321879825898292
Merged-chr4-148501068-3	chr4	148500960	148501160	+	839.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039554)	promoter-TSS (NM_001039554)	-598.0	NM_001039554	654812.0	Mm.388929	NM_001039554	ENSMUSG00000028989	Angptl7	-	angiopoietin-like 7	protein-coding	4.18702575768981	3.66428755154142	3.8760683749406	4.18307067208775	2.95585712464979	3.23889946117729	3.03405132130331	3.26614021164813	-3.53916504585812	2.90460262322821e-07	1.12914642336844e-05
Merged-chr19-41371492-4	chr19	41371400	41371600	+	951.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	L1MA9|LINE|L1	13570.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	5.12015843314095	4.72444962322197	5.18668765039241	5.10493918511757	5.47971258715606	5.26261466766417	5.44414407299099	5.33363388104949	0.625949380452592	0.0385555084862444	0.196995372804708
Merged-chr7-80386683-4	chr7	80386575	80386775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010194, intron 3 of 18)	intron (NM_010194, intron 3 of 18)	1271.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	7.39443739075095	7.37090177217012	7.3044863328106	7.43077376591145	7.24941782928917	7.23931991213253	7.2575675890074	7.55510824667697	-0.0659604600910783	0.716694142068498	0.886676884514573
Merged-chr8-68908814-3	chr8	68908660	68908860	+	750.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28205.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	2.88009731417347	3.10735501914908	3.00965326989289	2.82437979628819	2.94908354136328	3.0558657323246	3.11484278357697	3.23305003319507	0.561496952807385	0.334947896847427	0.64529103101308
Merged-chr17-87302384-5	chr17	87302250	87302450	+	991.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	19464.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	3.78766703266772	3.77205472372943	3.50627430561343	3.69661955327595	3.86300961960443	3.74385941860957	3.86894895374724	3.97386438294384	0.495845878306772	0.272025452349385	0.583620202679112
Merged-chr19-5406590-1	chr19	5406490	5406690	+	1000.0	f0_c57.idr	promoter-TSS (NR_015545)	promoter-TSS (NR_015545)	-225.0	NR_015545	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	3.0227497118437	2.93319850693502	3.02307655492821	2.37670209756346	4.66371950673719	4.01465829798052	4.47716122631436	4.18626627044545	8.23305849427195	1.55403269234786e-17	3.76239772138192e-15
Merged-chr6-39726392-3	chr6	39726310	39726510	+	823.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139294)	promoter-TSS (NM_139294)	-947.0	NM_139294	109880.0	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	3.60979711925438	3.87166754891478	3.55155596573722	3.66206152922947	4.12225235193594	3.78433219964737	3.70544748673222	3.71826249660163	0.510879494046359	0.280847277869355	0.593011818198245
Merged-chr11-117842238-3	chr11	117842132	117842332	+	853.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	-7005.0	NM_001012273	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	4.0557130599649	3.88504905134498	4.05635773424417	3.74138163799348	3.82106504844738	3.83748796215787	3.46518180286855	3.77006295511175	-0.574215225864757	0.225114800608889	0.533502988868384
Merged-chr9-106332930-3	chr9	106332831	106333031	+	970.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 10 of 10)	intron (NM_027354, intron 10 of 10)	-35701.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	3.50508067591367	3.51737609671098	3.42350303614508	2.72359560562884	4.91924979677723	4.92384613093953	5.30485703134404	5.19514833378208	5.61387842300157	2.20541085972908e-23	1.180292778832e-20
Merged-chr10-96188969-2	chr10	96188869	96189069	+	910.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37238.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	3.3020839346633	3.5002682957173	3.30250922021875	3.22492442522473	3.5402117509802	3.52847595637059	3.17021864976931	3.04566973132825	0.039189288667151	0.944325666755623	0.98001307294383
Merged-chr1-87622022-4	chr1	87621901	87622101	+	986.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	1689.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	4.9886064370333	4.95427290844144	5.1429980546752	3.95911339765136	4.98028589885527	5.06173473598143	4.82801771964352	4.60958580698621	0.0972475545794861	0.823073513629396	0.932185203682946
Merged-chr11-98943537-4	chr11	98943418	98943618	+	952.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177303, intron 1 of 8)	intron (NM_001177303, intron 1 of 8)	3807.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	5.54328097384116	5.06843642035428	4.72282417938333	5.15856097073536	5.37473954994506	5.34116147389423	4.90361522540598	4.71981809693836	-0.0633091462289445	0.863283108541863	0.948573763987243
Merged-chr17-35090167-3	chr17	35090062	35090262	+	987.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178592, intron 1 of 19)	intron (NM_178592, intron 1 of 19)	871.0	NM_178592	193742.0	Mm.43745	NM_178592	ENSMUSG00000007036	Abhd16a	AI326074|Bat-5|Bat5|D17H6S82E|NG26	abhydrolase domain containing 16A	protein-coding	3.4207394016993	3.30897062683021	3.60442350950369	3.15592979154026	4.1567338694657	3.78215642827531	3.7981443019111	4.11420511443427	1.91678025030412	9.57117905160818e-05	0.0019576636600989
Merged-chr12-69190684-2	chr12	69190584	69190784	+	898.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027269, intron 2 of 2)	B2_Mm2|SINE|B2	6526.0	NM_146035	217664.0	Mm.206642	NM_146035	ENSMUSG00000043998	Mgat2	AA407964|CDGS2|GLCNACTII|GNT-II|GNT2	mannoside acetylglucosaminyltransferase 2	protein-coding	3.52927996566601	3.52248454117459	3.17864490564711	3.19070365710166	3.47033900922812	3.48024808408372	3.56462575184228	3.3641879499372	0.390522742070361	0.454864574683112	0.738572565672132
Merged-chr3-50382953-3	chr3	50382867	50383067	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011990, intron 7 of 11)	intron (NM_011990, intron 7 of 11)	60646.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	5.37857589494882	5.20125261215855	5.14899917366187	5.35186166693415	3.8897139779029	3.930477549562	4.3379528463765	4.40520209931368	-2.55400843401316	2.63746430459855e-10	1.89628355289919e-08
Merged-chr5-117307855-4	chr5	117307754	117307954	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-11412.0	NM_001033311	231668.0	Mm.298603	NM_001033311	ENSMUSG00000066894	Vsig10	-	V-set and immunoglobulin domain containing 10	protein-coding	5.4189842840728	5.35906839372413	5.47401196568537	5.48555029152247	5.08931336842713	5.05827607016673	5.33668463222746	5.35966319062656	-0.406185406687631	0.158692165825657	0.44572447602022
Merged-chr6-87542811-4	chr6	87542708	87542908	+	945.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9549.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	3.81384506500534	3.52083616426819	3.97001897095712	4.34785221798099	3.88149758570968	3.87854489432182	4.17419279839767	4.19094416623801	0.193643696819715	0.699378386441387	0.878772573452614
Merged-chr4-141617475-4	chr4	141617394	141617594	+	957.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151462, intron 2 of 5)	intron (NR_151462, intron 2 of 5)	1139.0	NM_145987	213989.0	Mm.34891	NM_145987	ENSMUSG00000043085	Tmem82	-	transmembrane protein 82	protein-coding	5.2985194938271	5.40411798986629	4.62594672537656	5.17252427938427	5.48361874523237	4.98934044406734	4.94480826935232	5.58078874657955	0.23294484758823	0.51831985539625	0.779459059723581
Merged-chr3-30992339-4	chr3	30992247	30992447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3424.0	NM_008857	18759.0	Mm.291554	NM_008857	ENSMUSG00000037643	Prkci	2310021H13Rik|AI427505|PKClambda|Pkci|Pkcl|Prkcl|aPKClambda|mKIAA4165	protein kinase C, iota	protein-coding	6.2483643422282	5.67800793279783	5.84646327677427	6.26613002405655	5.86070733179575	5.60957097274568	5.71856826064683	5.93386724221574	-0.4067790669003	0.14144097270223	0.418490543125579
Merged-chr6-39418102-4	chr6	39418005	39418205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018810, intron 1 of 7)	intron (NM_018810, intron 1 of 7)	1671.0	NM_001311109	54484.0	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	7.21659987781359	7.26761013571083	6.83987669975705	6.62537410561745	6.69539220406938	7.016666046201	6.8187379219765	6.35453437096821	-0.37355037797825	0.136988527163523	0.411595879061732
Merged-chr7-125601238-3	chr7	125601136	125601336	+	842.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2193.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	3.59296328442795	3.59329095326978	3.5934591218892	3.58703202410053	3.92488857011401	3.34303657320492	3.41275946482053	3.53774370077119	-0.0020888787204597	0.996775300112828	0.998697518182638
Merged-chr14-121378457-4	chr14	121378362	121378562	+	974.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145465, intron 1 of 10)	CpG	768.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	5.10841601726609	4.75511862572412	5.14022020962625	4.84970821439676	5.08948486000271	4.79982403893977	5.33614819258442	4.82701898451269	0.143932240123617	0.6706038627405	0.8642024686037
Merged-chr2-25628746-7	chr2	25628583	25628783	+	980.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007995)	promoter-TSS (NM_007995)	-709.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	4.64535497583772	4.32962491220124	5.16604249615565	5.21920171592993	4.0821567199659	4.38221558383189	3.95236535100232	4.29824077605294	-1.6283213241788	0.000226442239746403	0.00403149879512486
Merged-chr4-132884479-4	chr4	132884382	132884582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133887)	promoter-TSS (NM_133887)	-24.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	6.16026506380917	5.54897050169855	5.82326682889749	5.82983447554491	5.83952486927918	5.84650605806109	5.81749201485366	6.31316747435289	0.1846300997501	0.505439605695863	0.771470037762552
Merged-chr14-30625164-4	chr14	30625150	30625350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	958.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	5.27362519504624	5.35985748155796	5.50047090018269	5.14986181636592	5.48048653882711	5.28589534797255	5.18578215788638	5.36049678114166	0.047932625471436	0.869797785270626	0.951106654342611
Merged-chr7-43654702-4	chr7	43654611	43654811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031181, intron 6 of 6)	intron (NM_031181, intron 6 of 6)	5450.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	6.54191567319842	6.685681931333	6.44096000030682	6.78875189891057	6.47131850130488	6.56365279493642	6.70506576343355	6.4185250802932	-0.135485422102171	0.532486587168046	0.78817714997576
Merged-chr8-114133581-4	chr8	114133487	114133687	+	961.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290182)	promoter-TSS (NM_001290182)	13.0	NM_024437	67528.0	Mm.27889	NM_024437	ENSMUSG00000031767	Nudt7	1300007B24Rik|2210404C19Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding	4.71390086492492	4.79574793088193	4.30499494002867	4.89062490746606	4.98564362028039	4.92590168160072	4.69266417275742	4.85881891836852	0.333584838194537	0.352338220741846	0.659507250484758
Merged-chr6-140577607-4	chr6	140577497	140577697	+	693.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144920, intron 22 of 30)	intron (NM_144920, intron 22 of 30)	-45066.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	3.39241372258841	3.37401062374535	3.70185433614425	3.21957808174904	3.54921756385031	3.31801745013452	3.59146154436043	3.44793132923088	0.208284438593909	0.690691880856807	0.874049428217715
Merged-chr10-127188754-3	chr10	127188652	127188852	+	774.216675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358557)	promoter-TSS (NM_001358557)	20.0	NM_001358557	52666.0	Mm.272230	NM_028027	ENSMUSG00000019467	Arhgef25	2410008H17Rik|D10Ertd610e|GEFT	Rho guanine nucleotide exchange factor (GEF) 25	protein-coding	3.91064528442182	3.62585910014353	3.72305529713558	3.67320167703695	3.67598922221731	3.49045599403444	3.80408841062118	3.55922305938741	-0.281361143231514	0.555117038475682	0.801243003883125
Merged-chr3-15345781-4	chr3	15345673	15345873	+	875.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13471.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	4.75993678453039	4.73263009449064	5.1053626650647	4.83966660973975	4.37680662493537	4.69932402230544	4.45919302587426	4.2309080461041	-0.913557727263556	0.0131659466343296	0.0957926400775782
Merged-chr11-80171379-4	chr11	80171251	80171451	+	892.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 7 of 10)	MIR3|SINE|MIR	-12521.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	3.08099008230774	3.19155659147353	2.94612292304607	2.97569558292286	3.44982867243785	3.31666037678924	3.19209643165618	3.41735058481452	1.14923308653561	0.0352673303537439	0.186223539113438
Merged-chr16-36939321-4	chr16	36939210	36939410	+	994.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008225, intron 3 of 13)	RLTR40|LTR|ERVK	4327.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	5.21204909070329	5.15272664303473	5.05500959737876	5.30032133127968	4.98317921360746	5.16015785169461	4.85178159319278	4.87144114913855	-0.426050561659606	0.169547835386611	0.462210400538703
Merged-chr1-183633799-2	chr1	183633603	183633803	+	892.333374	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115274.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	2.08863966057988	2.04947748578096	2.08878516367956	1.96221061731191	2.60493375953937	2.57626248292751	2.57969569290888	2.80948994266696	4.41003889554805	3.10331128844418e-06	9.73515179374915e-05
Merged-chr5-150673702-4	chr5	150673607	150673807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346503)	promoter-TSS (NM_001346503)	-120.0	NM_175310	100710.0	Mm.32959	NM_175310	ENSMUSG00000034021	Pds5b	AI646570|AS3|AW212954|Aprin|Tg(Wap-ERBB2)229Wzw|WAP-Her-2|mKIAA0979	PDS5 cohesin associated factor B	protein-coding	9.03845253498092	9.22848765761245	9.14048526366465	9.19873048318953	9.07410989577813	9.20354122123241	9.30742759817764	9.09224457694322	0.0193332568817566	0.892631387450679	0.959816321034536
Merged-chr9-108936683-4	chr9	108936577	108936777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025407)	promoter-TSS (NM_025407)	29.0	NM_025407	22273.0	Mm.335460	NM_025407	ENSMUSG00000025651	Uqcrc1	1110032G10Rik	ubiquinol-cytochrome c reductase core protein 1	protein-coding	6.60905430945517	6.56718598695569	5.97954901240065	6.33439450655748	6.76542343729406	6.36268810352278	6.66314022702209	6.3008117026732	0.222392991148187	0.375626631364675	0.678579934364767
Merged-chr5-45492420-4	chr5	45492336	45492536	+	918.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024434)	promoter-TSS (NM_024434)	-938.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	4.62956798541182	4.55171520050545	4.87396765999076	5.6106009781546	4.82709800363316	4.62379656256524	5.22836736723772	5.07530144511166	-0.104507396582678	0.806215206211237	0.925372909021511
Merged-chr14-46981291-4	chr14	46981176	46981376	+	731.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-20064.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	4.90319132168532	4.52361818233964	4.57391466035198	4.45787186838224	4.6445343897153	4.66378623402474	4.97227297383099	4.57098622045732	0.230720666595186	0.523514850433978	0.782507755382099
Merged-chr5-30888528-4	chr5	30888435	30888635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001294262)	promoter-TSS (NM_001294262)	-317.0	NM_174849	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	5.67545398369992	5.47475961279082	5.03613634552579	5.33045490028786	5.5850047217526	5.77556301436774	5.46886327790919	5.5728466750313	0.358022467231253	0.217844721116394	0.524758115787161
Merged-chr9-100642863-3	chr9	100642766	100642966	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357264)	promoter-TSS (NM_001357264)	-582.0	NM_009282	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	5.40188562953555	5.32451357120735	4.96943559726293	5.26659230279421	5.62866278021214	5.2960568849029	5.50875404834935	5.37048252448645	0.379721662581839	0.193997176476421	0.49433215631272
Merged-chr1-40790680-4	chr1	40790581	40790781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172499)	promoter-TSS (NM_172499)	-24.0	NM_172499	211798.0	Mm.235443	NM_172499	ENSMUSG00000041945	Mfsd9	4931419K03Rik	major facilitator superfamily domain containing 9	protein-coding	7.29743118732103	6.97952558230737	6.66781310992362	7.39059375537925	6.92830161051409	7.01371700866085	7.0471711894143	6.92794120767331	-0.204058162620877	0.364263740285008	0.66919418685628
Merged-chr5-130075090-4	chr5	130074943	130075143	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013837, intron 1 of 5)	intron (NM_013837, intron 1 of 5)	1717.0	NM_013837	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	5.20056540218674	5.21686620786038	4.81302522977175	5.20417860138309	4.96430602173182	5.10731684868097	4.98020302131446	5.39438072871135	-0.017365234836033	0.956891575960782	0.984757116793997
Merged-chr7-101905817-4	chr7	101905733	101905933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025605)	promoter-TSS (NM_025605)	-4.0	NM_025605	66508.0	Mm.30003	NM_025605	ENSMUSG00000030842	Lamtor1	2400001E08Rik|Pdro|p18	late endosomal/lysosomal adaptor, MAPK and MTOR activator 1	protein-coding	8.37051441025602	8.62604787113776	8.50911156210784	8.28797414793999	8.31622822165719	8.46624355163152	8.3750130117518	8.42414457645239	-0.0716501410259996	0.652619488071129	0.854764223296605
Merged-chr9-62196964-2	chr9	62196864	62197064	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47136.0	NR_040769	330958.0	Mm.411888	NR_040769	ENSMUSG00000111232	A730043L09Rik	A730043L09	RIKEN cDNA A730043L09 gene	ncRNA	2.89591101728399	3.12621914274532	2.89627263806996	2.62944468809396	2.7716448691123	2.80281345440348	2.94539430257877	2.95514657371868	-0.103799129053539	0.870659406752048	0.951430072143722
Merged-chr13-95845188-4	chr13	95845162	95845362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	PB1D10|SINE|Alu	46660.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	5.75199114829894	6.04289483396244	5.40794567577959	5.696591664266	5.83226602764636	5.97782836162982	5.97297174458773	6.07939733205719	0.349795259309184	0.188792012377105	0.487633707369135
Merged-chr17-10703564-2	chr17	10703445	10703645	+	719.0	f0_balb.idr|f1_balb.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	136646.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	3.41076976281396	2.93579143461949	3.41134725684292	3.3807994417279	2.4867239532267	2.73220660838302	2.77029376963803	2.77720520454392	-3.26030311529701	6.75636281763132e-05	0.00145951790287156
Merged-chr13-95639827-3	chr13	95639747	95639947	+	996.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 30 of 35)	intron (NM_027711, intron 30 of 35)	-21381.0	NM_010169	14062.0	Mm.24816	NM_010169	ENSMUSG00000048376	F2r	AI482343|Cf2r|Par1|ThrR	coagulation factor II (thrombin) receptor	protein-coding	3.83676655397807	4.15486573537903	3.63933234929333	3.61388453959426	4.69906740409918	4.639083243845	4.2389473800974	4.79900940294016	1.95531441645989	7.18588028659324e-06	0.000205250310160281
Merged-chr3-22058412-3	chr3	22058311	22058511	+	849.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18241.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.07574239150657	3.61129210515193	3.94685457926595	4.21292614240521	3.60235589656167	3.50238329149281	3.62618944877767	3.80026718547923	-1.0467497825787	0.033891157443763	0.181669393931705
Merged-chr15-84341226-4	chr15	84341116	84341316	+	934.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162500, intron 12 of 12)	intron (NM_001162500, intron 12 of 12)	15097.0	NM_001162500	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	4.50834376731808	4.27883844260471	4.07342161519756	4.11819323221415	4.53470795385149	4.56110935051916	4.05718381426505	4.17022809903284	0.259092108616067	0.534601869997419	0.789286995820758
Merged-chr1-192536647-4	chr1	192536553	192536753	+	916.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 11 of 11)	intron (NM_144881, intron 11 of 11)	234566.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	4.02011426873934	4.57841663785874	4.37895000964515	4.87491389675326	4.58542821345961	4.14612561923782	4.60118908053223	4.62006716747973	-0.0287477430141682	0.947378917413888	0.981150372660785
Merged-chr2-35289191-3	chr2	35289073	35289273	+	957.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206368, intron 3 of 16)	intron (NM_001206368, intron 3 of 16)	6793.0	NM_146120	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	3.63304562227075	3.93090480789532	3.68985365959229	3.7787624093413	3.68636492352427	4.06171572880794	3.67550519899793	3.84328246150222	0.156393360701206	0.735621800032105	0.895620853939579
Merged-chr14-118768167-4	chr14	118768075	118768275	+	987.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19696.0	NM_001160098	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	5.25271769926787	5.3479092994625	5.3457958530458	5.81642900107947	5.19818905377487	4.89403221963409	5.58338049114509	5.34207614058171	-0.358235492741014	0.278813479191017	0.591009603347969
Merged-chr2-167754073-4	chr2	167753969	167754169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62892.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	8.77846170791488	9.05811782747457	8.89024248012371	8.81279182741533	8.76958596904651	8.95352426030397	8.86536983566964	8.6444911127658	-0.0961003210276237	0.535632952747997	0.789809240803911
Merged-chr4-47275187-4	chr4	47275119	47275319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 14 of 39)	intron (NM_009928, intron 14 of 39)	67207.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	6.87054431461442	7.1245479626458	6.34800986328814	6.24681095533054	6.96213806722337	6.99482477479136	6.57933543087042	6.43807079510056	0.10569010119767	0.706370643327249	0.882026349021226
Merged-chr13-73604326-2	chr13	73604226	73604426	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146047, exon 1 of 17)	exon (NM_146047, exon 1 of 17)	324.0	NM_146047	218335.0	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	4.18084495985175	4.09490450734459	4.67880459422698	4.17650966572648	4.17902346416542	4.20944595051494	4.16327511653475	4.13126286173054	-0.30805333713714	0.459607357455936	0.742079588810442
Merged-chr7-44960257-2	chr7	44960171	44960371	+	883.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357670, intron 16 of 18)	intron (NM_001357670, intron 16 of 18)	14580.0	NM_001357670	78070.0	Mm.231465	NM_153679	ENSMUSG00000007783	Cpt1c	6530437J22Rik|9630004I06Rik|CPT I-C|CPT IC|CPT1-B|CPTI-B	carnitine palmitoyltransferase 1c	protein-coding	2.75146918798309	2.5955300856084	2.80743596284389	2.35788301164878	2.59504040717444	2.53522386167645	2.42432723176383	2.35565053084706	-0.802205537210664	0.276470806798729	0.588504895079849
Merged-chr18-65802445-4	chr18	65802321	65802521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025468, intron 1 of 5)	intron (NM_025468, intron 1 of 5)	1843.0	NM_025468	66286.0	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	6.3979729794799	6.48803809019929	6.19242940721713	6.44412188390697	6.1808538947191	6.4284210090793	6.20076592959056	6.46193948394741	-0.11181302667278	0.620091147239786	0.837062484958576
Merged-chr1-65230751-4	chr1	65230643	65230843	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310624, intron 12 of 41)	intron (NM_001310624, intron 12 of 41)	44058.0	NM_011086	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	4.09316461081877	4.0404444545796	4.48497417148644	5.13840959631616	4.69406718998801	4.22171840006731	4.58413329667367	4.81471820440394	0.128294607896675	0.792641531112669	0.919627897475503
Merged-chr19-3283002-4	chr19	3282905	3283105	+	996.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009212)	promoter-TSS (NM_009212)	5.0	NM_009212	20589.0	Mm.3179	NM_009212	ENSMUSG00000024831	Ighmbp2	AEP|Catf1|RIPE3b1|Smbp-2|Smbp2|Smubp2|nmd|sma	immunoglobulin mu binding protein 2	protein-coding	4.73096603121875	5.11245877674077	4.85472985741632	4.78022285278617	4.96657127434038	5.58547087282717	5.10958725663829	5.16254254025924	0.656181478843826	0.0499369301145613	0.231576047209874
Merged-chr9-95566519-4	chr9	95566415	95566615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6698.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	5.09353013133875	5.01593528915151	5.3152575989035	5.30469874083551	5.17725071702904	5.19998266150547	5.47518434860805	5.1902220857396	0.123966937326239	0.680271413098039	0.868772565047193
Merged-chr6-123289911-4	chr6	123289817	123290017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019948)	promoter-TSS (NM_019948)	-46.0	NM_019948	56619.0	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	5.40492286583094	5.8832290565662	5.21904226047638	5.19713177637737	5.40160217200322	5.52183406609856	5.54044312362063	5.14673194733346	-0.0734657966693577	0.818315618100632	0.930312847480992
Merged-chr2-11524027-4	chr2	11523932	11524132	+	931.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	-21942.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	5.20166232487301	5.34652465064348	4.78445929223365	4.22730029634832	5.49934070873168	5.55934736777952	5.60996613231131	5.70245066519246	1.16554421874008	0.00184281748558639	0.0219494487628101
Merged-chr4-130919890-4	chr4	130919780	130919980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	6546.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	5.29766811500272	5.63740734790352	5.56762404272144	6.06024967048043	5.79077647096116	5.30223768681471	5.3679353961355	5.69163408081335	-0.215619612551151	0.497594904132357	0.767111556631587
Merged-chr13-94005893-3	chr13	94005755	94005955	+	765.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51941.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	3.18776128301877	3.35107443590429	3.40379417878919	3.02032713911775	3.02331212057733	3.23974806451724	2.98984751943884	3.18649731287019	-0.512786258830353	0.374526242208946	0.677830694759353
Merged-chr4-125122588-4	chr4	125122409	125122609	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153159, intron 2 of 5)	intron (NM_153159, intron 2 of 5)	5372.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	4.39031440922445	4.73419000882497	4.7974888445081	4.67730022103841	4.97041895635274	4.47193183020604	4.58905323988281	4.60731154849899	0.0595880962307482	0.871460813652248	0.951627503185851
Merged-chr2-3621554-4	chr2	3621447	3621647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-91911.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	5.84582840316023	5.9537277025074	6.32091112187337	6.15306157292077	5.99823622613675	6.02415170954848	6.20003727424679	6.17098976469632	0.0200537226798723	0.934643077023706	0.976356212091203
Merged-chr1-172412449-4	chr1	172412317	172412517	+	737.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35886.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	3.76975177878835	3.48639677288256	3.25567939074789	3.63513044742666	3.78017381771985	3.50300816202051	3.55219816555366	3.90182829153662	0.444103975540318	0.385663059995953	0.687082084332605
Merged-chr19-55862710-3	chr19	55862604	55862804	+	691.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-32617.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.18276237240283	3.31814122929109	3.1831487262219	3.46340203694461	3.1446060367396	3.02336544935373	3.11090321316632	3.54660700376022	-0.287898673212541	0.618603127624832	0.836036835612583
Merged-chr9-61056478-4	chr9	61056379	61056579	+	956.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39410.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	4.71805359006718	4.78801985476842	5.01311966144207	5.22154106453182	4.86448909132961	4.85397379877404	5.05218679230112	4.90726033031878	-0.0996500043398168	0.768698265838908	0.90939721515425
Merged-chr4-150891480-4	chr4	150891380	150891580	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	18441.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	4.59728251632952	5.10761664407558	5.01145385967477	4.71075946561576	4.68626669941283	4.23938609762586	4.20604332155217	4.51098133556624	-0.936473110410219	0.0181111465656128	0.119740235252591
Merged-chr16-85455353-3	chr16	85455203	85455403	+	834.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_144853)	TTS (NM_144853)	95070.0	NM_144853	224405.0	Mm.213203	NM_144853	ENSMUSG00000041134	Cyyr1	-	cysteine and tyrosine-rich protein 1	protein-coding	2.67644305107582	2.61571633306325	3.17648069416949	2.44186278510743	3.74084049947856	3.23375825009831	3.1024592758839	3.62669053475547	2.98029751433599	5.69802394198156e-05	0.00126585407667386
Merged-chr16-32813146-4	chr16	32813048	32813248	+	926.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2702.0	NM_001256309	381043.0	Mm.303864	NM_001256309	ENSMUSG00000094430	Smbd1	Gm1743|Gm933	somatomedin B domain containing 1	protein-coding	4.40886112279231	4.62403166832992	4.11823975529138	4.19814140415677	4.61056451769015	4.74309467675899	4.47300171422989	4.44951360124526	0.519803775047229	0.175273970937375	0.46995478544412
Merged-chr10-85952117-7	chr10	85952019	85952219	+	974.3843380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145422, intron 3 of 11)	intron (NM_145422, intron 3 of 11)	5674.0	NM_145422	28088.0	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	4.40720260263581	4.18319952438658	4.63127523087756	4.50705072580733	4.04678362888657	4.31250438225212	4.11922131181059	4.27669985243536	-0.628239317908078	0.115968503644075	0.376746786372172
Merged-chr12-111572619-2	chr12	111572519	111572719	+	936.25	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045295, exon 2 of 2)	non-coding (NR_045295, exon 2 of 2)	1783.0	NR_045295	100504687.0	Mm.26072	NR_045295	ENSMUSG00000096995	2810029C07Rik	AU017849	RIKEN cDNA 2810029C07 gene	ncRNA	3.31457629207812	3.44848399630309	2.93243431391849	2.65755381459988	3.06361587329371	3.54034417513009	3.30107812928166	3.25653493652438	0.629813520057015	0.332706605840978	0.643595051015192
Merged-chr8-41374775-4	chr8	41374681	41374881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019734)	promoter-TSS (NM_019734)	-84.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	8.43389162139924	8.62363660267246	8.43523228984631	8.86602287214038	8.71591588121513	8.52537931882942	8.84432913308935	8.49107609104083	0.0548193234107103	0.757881912065499	0.90490952828044
Merged-chr3-38143303-4	chr3	38143185	38143385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64834.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	6.43462831751415	5.95954421677113	6.50079337161457	6.69374679597198	6.24953021679894	5.83607268963245	6.51388930887341	6.27131484808342	-0.284681031562415	0.296472031559997	0.608494311834169
Merged-chr1-65569526-2	chr1	65569426	65569626	+	739.700012	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10|LTR|ERVK	258269.0	NM_139270	213527.0	Mm.294225	NM_139270	ENSMUSG00000025946	Pth2r	Pthr2	parathyroid hormone 2 receptor	protein-coding	3.23626675869975	3.19093637091576	3.35882810048873	3.37416935987338	3.31569568084059	3.53111184796968	3.69615608398769	3.5209564169197	0.752429052915468	0.147085889873826	0.42788514025699
Merged-chr18-56874726-4	chr18	56874615	56874815	+	710.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177115, intron 1 of 4)	intron (NM_177115, intron 1 of 4)	50833.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	3.60779811555418	3.32007798530762	3.93966132619673	3.5453806273993	3.30053721245565	3.35210086225876	3.74435666370595	3.93703554566619	-0.0274366380661759	0.960369291277792	0.985883800393479
Merged-chr1-87638394-4	chr1	87638296	87638496	+	985.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	18084.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	5.23841836780493	5.33446887097116	5.47183678666758	5.62479810423219	4.83620709339172	5.34995678038789	5.21351127596949	5.46797649793736	-0.382172306305413	0.229132233744102	0.538010661957944
Merged-chr6-136621004-2	chr6	136620921	136621121	+	778.333374	f0_balb.idr|f1_balb.idr	intron (NM_025806, intron 6 of 10)	intron (NM_025806, intron 6 of 10)	40872.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	4.06105920913677	3.88112890939568	3.80498840928091	3.85219982890414	3.38101744488713	3.40123069559171	3.5288492021239	3.35359810017856	-1.59375414856906	0.00162469719758165	0.0198906642288724
Merged-chr19-6242480-4	chr19	6242370	6242570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194348, intron 1 of 39)	intron (NM_194348, intron 1 of 39)	802.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	7.6751148570788	7.83197303336472	7.10841838347224	7.35124907764118	7.56841579599827	7.70037071136817	7.40209257318841	7.18864200933103	-0.0542864988225163	0.809166717216424	0.926362488588753
Merged-chr3-20509405-4	chr3	20509317	20509517	+	973.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-142240.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	4.00376003312421	4.35315479306344	4.39472501698237	4.34056338519872	4.50318195148933	4.43599544435133	4.76534777819989	4.05759041814065	0.421211177670841	0.306578194415986	0.619026702040607
Merged-chr2-13413708-4	chr2	13413591	13413791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 27 of 66)	intron (NM_001081084, intron 27 of 66)	78185.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	7.57475717236148	7.49693976465305	7.33907357262486	7.40779820560497	6.98324331697989	7.09089668815298	7.15395126238962	6.94945236469241	-0.558301767131507	0.0022330065692659	0.0254478575748823
Merged-chr10-71383751-3	chr10	71383655	71383855	+	945.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347191, exon 6 of 6)	3' UTR (NM_001347191, exon 6 of 6)	35992.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	3.92330041683505	3.84645617147434	4.49560706801351	4.29026004167527	3.40316578938286	3.44415572153001	3.45602490044362	3.76826961687089	-1.96365139552493	0.000186811428402139	0.00343681847046675
Merged-chr13-44231310-4	chr13	44231229	44231429	+	860.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14842.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	5.41125335276877	4.85998776938194	5.18503345820374	5.16244076157234	4.05339993536857	4.32209909649446	4.69880039364715	4.59279545561725	-1.56206666373499	5.71458461645434e-05	0.0012691370309348
Merged-chr9-13536884-4	chr9	13536777	13536977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83112.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	6.65128452924427	7.43218362277504	6.8020764330108	6.97789448968533	6.86072190462929	6.82993963281915	6.63420213135782	6.38397035070651	-0.436444493726069	0.0804289515826087	0.30749018931671
Merged-chr7-140116483-4	chr7	140116385	140116585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053119)	promoter-TSS (NM_053119)	-62.0	NM_053119	93747.0	Mm.24452	NM_053119	ENSMUSG00000025465	Echs1	C80529	enoyl Coenzyme A hydratase, short chain, 1, mitochondrial	protein-coding	7.3645467104419	7.18931870945078	7.18290146378501	7.44993748307442	7.59371274707387	7.30109553124807	7.4251856682121	7.28861724180478	0.141816285253855	0.452820913664201	0.73705030775748
Merged-chr19-26749268-3	chr19	26749147	26749347	+	794.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026003, intron 1 of 8)	intron (NM_026003, intron 1 of 8)	844.0	NM_026003	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	4.10627506514519	3.89710371012515	3.96833668826861	3.92391615196479	4.20165610041443	4.18635450644381	3.90235444044519	3.57131912831473	0.064364809909545	0.888804966765028	0.958331420576655
Merged-chr1-88224662-3	chr1	88224564	88224764	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3A1|LTR|ERVK	-2356.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	5.42888412117136	5.07707510116868	4.98269741588898	4.61333532860211	5.17044074338338	5.00928329191807	5.21451262270314	5.04883624971637	0.145916078300416	0.674775295207257	0.866330912606255
Merged-chr17-46154523-4	chr17	46154420	46154620	+	921.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025649)	promoter-TSS (NM_025649)	-969.0	NM_025649	66591.0	Mm.272024	NM_025649	ENSMUSG00000034509	Mad2l1bp	0610009D16Rik|2510031P20Rik|AU018945|AW550977|C76045|CMT2A|CMT2B|Mad2lbp|mKIAA0110	MAD2L1 binding protein	protein-coding	4.03430926081464	4.00047611112044	3.82286847404269	3.92809257974341	3.96604857053641	4.0563941774173	4.39176714731182	4.37342816998761	0.670077946280767	0.113999550300434	0.373450486813086
Merged-chr11-69689830-4	chr11	69689758	69689958	+	867.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011614, intron 5 of 6)	intron (NM_011614, intron 5 of 6)	-4304.0	NM_023517	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	3.4909750599342	3.3635584191468	4.17622675023466	3.5890721917325	3.24327568017063	3.28772053202804	3.36056715732257	3.54495309322191	-1.08502529743773	0.055361492436051	0.246039939442162
Merged-chr2-84988150-4	chr2	84988062	84988262	+	711.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016914)	promoter-TSS (NM_016914)	-53.0	NM_016914	53856.0	Mm.19943	NM_016914	ENSMUSG00000027072	Prg3	MBP2|MBPH	proteoglycan 3	protein-coding	3.57508841315539	3.19529881423641	3.30288385414514	3.33648842698322	3.61994654513549	3.1450410568301	3.56025883188795	3.52347436370043	0.420878660095313	0.432917642935446	0.722720756772337
Merged-chr5-124623184-4	chr5	124623138	124623338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026486, intron 14 of 18)	intron (NM_026486, intron 14 of 18)	-5814.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	5.09104662504744	5.28865825986728	5.42325961125137	5.24097132373245	5.37173747595178	5.12383074630739	5.10098904101626	5.08846080409398	-0.141695155054104	0.636895275686056	0.846502013445453
Merged-chr13-45005325-4	chr13	45005209	45005409	+	949.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3213.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	5.20098922884736	5.48627300385689	5.66178249153814	5.6328906531056	4.88682727735835	4.61506529991822	4.45889233964743	4.92435844827209	-1.47362272944811	1.50151066638608e-05	0.000395837139713683
Merged-chr11-31872918-7	chr11	31872902	31873102	+	874.045349	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290676, exon 1 of 9)	exon (NM_001290676, exon 1 of 9)	2062.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	3.55006236338579	3.417067787963	3.43792300445013	3.18548391625151	3.44993587779206	3.49372067490716	3.68660196528736	3.87868718720892	0.80272947633968	0.116195921710132	0.377134514266601
Merged-chr1-164307570-4	chr1	164307462	164307662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293313)	promoter-TSS (NM_001293313)	-75.0	NM_001357052	66352.0	Mm.33285	NM_025505	ENSMUSG00000026577	Blzf1	1700030G05Rik|Blzf1l|Golgin-45|Jem-1	basic leucine zipper nuclear factor 1	protein-coding	8.40294617085698	8.3362699468134	8.23632053381349	8.36257038059003	8.54357602208653	8.50646766469534	8.737499307429	8.2721602992995	0.239359692491964	0.144893444406628	0.42405207349284
Merged-chr18-77967064-4	chr18	77966965	77967165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 12 of 43)	intron (NM_001195633, intron 12 of 43)	28598.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	5.59321317679219	5.4816786460739	6.18816262749944	6.00800810940185	5.64578844334879	5.65560863060612	6.1562874833	5.53288323782814	-0.137297577983681	0.655145679287421	0.855926990675807
Merged-chr3-115695270-4	chr3	115695138	115695338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19817.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	5.91333084617775	6.09624954822067	6.06479675902379	5.99651425100792	5.82407068125092	6.04338476725858	5.79013038955663	5.86370896868627	-0.223130180592403	0.353480474701633	0.660273623806948
Merged-chr7-113308903-3	chr7	113308794	113308994	+	903.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357070, intron 18 of 19)	(TG)n|Simple_repeat|Simple_repeat	60445.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	3.85490336285836	3.70177544440766	3.94610400416836	3.62294256589836	3.85886865039174	3.59114415087908	3.69120794447688	3.59397952944871	-0.242730980032645	0.6094942189827	0.831031894356171
Merged-chr4-59181496-4	chr4	59181382	59181582	+	768.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8068.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	3.73238746885345	3.54646576221536	3.56311478295011	3.61000088982806	4.07885682852082	3.85240842187571	3.81862171384568	3.97164057371649	0.956800511008096	0.0330119666025079	0.178295680309577
Merged-chr13-105227189-4	chr13	105227070	105227270	+	920.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 5 of 7)	Lx9|LINE|L1	65844.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	4.93603160104026	5.00789050657295	5.2786337309865	5.08540669442948	4.75436647583471	4.92212868372079	5.13918559731671	4.69969979289271	-0.388600644933984	0.236969571517698	0.547052091300172
Merged-chr11-114826871-4	chr11	114826762	114826962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24670.0	NM_001110337	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	5.38523262131354	5.75047568812908	5.41729098330026	5.75279965131678	5.63097756862158	5.62426214446975	5.82543233889196	5.73744407642489	0.165911452718966	0.543514520981171	0.794635310443027
Merged-chr6-72113507-4	chr6	72113413	72113613	+	997.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	MTC|LTR|ERVL-MaLR	9427.0	NR_045163	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	5.38197279410612	5.87867770353628	5.04315397933732	5.01917972047847	5.54997276629084	6.08354285221687	5.32581219790937	5.15112997726277	0.339986296338454	0.36003752649696	0.665611988334495
Merged-chr17-87106849-4	chr17	87106783	87106983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019654)	promoter-TSS (NM_019654)	-796.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	5.78753857120473	5.99782273339616	6.04707470099103	6.01865770960416	6.17143694126126	6.41735747238274	6.01617664612322	6.06382177818535	0.313991460843031	0.193104028120461	0.493233990655122
Merged-chr15-75089327-2	chr15	75089229	75089429	+	643.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	22608.0	NM_001357693	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	3.23962519196335	3.53233730797511	3.24001632553794	3.49859442262677	3.29208233882175	3.0822183794771	3.22870362095406	3.45855242437537	-0.42665239123009	0.43911706842104	0.727054346077057
Merged-chr5-25662835-3	chr5	25662763	25662963	+	959.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	42934.0	NM_020570	57434.0	Mm.143767	NM_020570	ENSMUSG00000028933	Xrcc2	4921524O04Rik|8030409M04Rik|RAD51|RecA	X-ray repair complementing defective repair in Chinese hamster cells 2	protein-coding	3.96575284442482	3.67402533170574	3.96636543229487	3.70021615787043	3.48348656741346	3.94253572604895	3.85475618765194	4.00879081690407	0.0122993327375214	0.979444260282514	0.99269129061727
Merged-chr6-134067166-3	chr6	134067071	134067271	+	833.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	MTD|LTR|ERVL-MaLR	31471.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	3.51912855677592	3.34104807446166	3.51962021831284	3.35684344062936	3.66355509760249	3.73985201658469	3.27558404796695	3.34717981692831	0.313201586925937	0.545217182023808	0.795786194536872
Merged-chr10-93484678-4	chr10	93484579	93484779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008517, exon 19 of 19)	exon (NM_008517, exon 19 of 19)	-4089.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	7.27399459107305	7.18495530605891	7.17288256729377	7.68374281712561	6.59017383062579	6.52320556030725	6.32987033885125	6.23061364402571	-1.30021055058642	1.30779172326527e-08	6.79469394673713e-07
Merged-chr8-13685836-4	chr8	13685748	13685948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD2|LINE|L1	-8261.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	6.57629126194632	6.79671570704955	6.67076390425403	6.63035520485044	6.53330971340152	6.70486560293471	6.99701622225929	6.15628872402181	-0.0564065339080548	0.81609068290794	0.929190254316708
Merged-chr4-103214754-4	chr4	103214627	103214827	+	989.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001356276, exon 1 of 12)	exon (NM_001356276, exon 1 of 12)	449.0	NM_001356276	242585.0	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	5.28835689781439	4.91294446375825	5.11654026723812	5.05545168453761	4.8070753057015	4.85283979663076	5.23631691780161	4.75722048469746	-0.33491406903023	0.311913206929542	0.623800122391555
Merged-chr10-67386241-4	chr10	67386166	67386366	+	891.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100985.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	4.45008745362103	4.54389205130205	4.49314821197344	4.59180960991537	4.33983099374943	4.62352993118709	4.73202834758124	4.40433350100827	-5.9723950982978e-05	0.99986986880615	0.999912012360248
Merged-chr13-112365981-4	chr13	112365845	112366045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 9 of 11)	intron (NM_001168403, intron 9 of 11)	77427.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	5.51506338594764	5.68296950124276	5.46299116246987	5.62093057857248	5.21739523433168	5.07400330993284	4.98900279291669	5.28535864124013	-0.76798237224466	0.00769115270208293	0.0653587375882142
Merged-chr12-110991750-4	chr12	110991630	110991830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2668.0	NR_036598	77878.0	Mm.293198	NR_036598	ENSMUSG00000113056	6030440G07Rik	-	RIKEN cDNA 6030440G07 gene	ncRNA	5.54861704713807	5.67720158188867	5.21051005219935	5.15675210429657	5.53346628361446	5.98922085175795	5.69695573067704	5.57243829881936	0.508455013791723	0.088052266144247	0.323699630817134
Merged-chr11-55023233-4	chr11	55023136	55023336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 1 of 24)	intron (NR_138556, intron 1 of 24)	10235.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	6.56608874354464	6.92816765960337	6.70293057540363	6.23852368227679	6.5970912678679	6.41985131064796	6.50160199716082	6.46322601226105	-0.175557583038485	0.468869129611383	0.74796915611306
Merged-chr6-50303721-4	chr6	50303618	50303818	+	952.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027881, intron 18 of 21)	L1MA8|LINE|L1	-41949.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	4.44973004501272	4.48000267113692	4.45041643317067	4.57770643140543	4.67986975977699	4.62276736963724	4.55215724148745	4.3590903586184	0.147925339636092	0.68096353609702	0.869036611076104
Merged-chr5-91960163-3	chr5	91960061	91960261	+	924.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026557, intron 1 of 8)	Charlie1a|DNA|hAT-Charlie	2395.0	NR_073442	68098.0	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	4.05531589557999	4.17685733996118	4.00999114719626	4.0797202509161	4.17491953590459	3.54775564781095	3.68022269580857	3.95998545365626	-0.557501622982183	0.240767340455461	0.551329427813959
Merged-chr4-9676443-4	chr4	9676341	9676541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7097.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	7.65680140928641	7.58423906838806	7.69894007753931	7.76055080663267	7.40640283901656	7.53693729296236	7.48057839885421	7.67751628200091	-0.205614635894212	0.231847872224933	0.54142155659784
Merged-chr2-32982141-4	chr2	32982033	32982233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019488)	promoter-TSS (NM_019488)	-50.0	NR_151460	56017.0	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	7.74237649123147	8.11957824031364	7.80008424536558	8.01738015677903	7.92025382102712	7.87084832450085	8.09788792674716	8.04392744755668	0.0643381575944325	0.711939674719093	0.884700502034922
Merged-chr3-89200023-4	chr3	89199926	89200126	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2899.0	NM_001077411	14466.0	Mm.5031	NM_008094	ENSMUSG00000028048	Gba	GBA1|GC|GCase|GLUC|betaGC	glucosidase, beta, acid	protein-coding	4.89066567938221	4.86307881410718	4.92756303361983	5.11102833899091	4.93187144590862	5.16884283498803	4.97263519814659	4.8129388521581	0.017319047738098	0.957069060152068	0.984757116793997
Merged-chr7-141020619-3	chr7	141020525	141020725	+	880.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51A_Mm|LTR|ERVK?	-3733.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	3.42617707023471	3.20316882093913	3.47857365096079	3.46290168742164	3.21241331573128	3.30601717116016	3.41285741415709	3.25529190285738	-0.373714401389001	0.478739019550619	0.754690163973656
Merged-chr10-68241205-4	chr10	68241111	68241311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	37515.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	8.07347286299854	8.05502206259405	8.37541214757815	8.12583365089089	7.693021329691	7.80191533388551	8.08031394450831	8.06942427661868	-0.313748422154263	0.0824696828863034	0.311792083612057
Merged-chr11-69966230-2	chr11	69966130	69966330	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001193619, intron 2 of 4)	CpG	809.0	NM_016887	53624.0	Mm.281896	NM_016887	ENSMUSG00000018569	Cldn7	-	claudin 7	protein-coding	3.12431908722675	3.08088677753473	3.74691323374562	2.72116257254099	3.36856935536918	3.36770567247476	3.35268343420242	3.30841435733602	0.438322241928503	0.492993720969196	0.763963269735953
Merged-chr14-21231910-4	chr14	21231791	21231991	+	859.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 4 of 10)	L1M3|LINE|L1	155739.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	3.84173229596639	3.95142578881775	4.1654276318078	4.14742284313462	3.9098844658864	3.52797855447246	3.87771467167555	4.0344088583921	-0.511057797782548	0.268056047708839	0.579897015647937
Merged-chr2-29125562-1	chr2	29125462	29125662	+	1000.0	f0_balb.idr	intron (NM_198033, intron 1 of 25)	CpG	570.0	NM_198033	269254.0	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	4.98852922161579	5.1922445107353	5.21139132868018	4.81854635619051	4.95533868081459	4.81263435585157	4.96528006057952	5.14828929793953	-0.141372890328437	0.664806797776737	0.861073297406066
Merged-chr14-52019701-6	chr14	52019682	52019882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253694)	promoter-TSS (NM_001253694)	-69.0	NM_001253694	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	7.48134985445042	7.63968679339199	7.37923816659159	7.59477926390564	7.8953036505656	8.30522324284899	8.29542646843854	7.8739142607871	0.744246222701476	8.87906017850698e-05	0.00183775116151773
Merged-chr3-90079530-4	chr3	90079438	90079638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293749)	promoter-TSS (NM_001293749)	17.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	8.18505783364182	8.48054596375329	8.08520984998473	8.4221300312716	8.05676453813118	8.32710177654315	8.45262187882044	8.01220611877553	-0.109890973649979	0.553208362352161	0.800040112261297
Merged-chr19-55585500-5	chr19	55585416	55585616	+	819.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	116688.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	3.53034236515729	3.56339891131805	4.06521162876553	3.9103355679921	3.75510291876618	3.76381361991539	3.73638823128166	3.46754892570433	-0.308824855846224	0.535030483934855	0.789545441306942
Merged-chr1-182907484-3	chr1	182907382	182907582	+	851.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47306.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	3.76587846632086	3.26005185795273	3.427492014453	4.18294533908664	3.38612730349225	3.83632005955922	3.47759456620242	4.03189120401125	-0.0217925911797525	0.970951312676623	0.989555055159975
Merged-chr16-7455802-1	chr16	7455702	7455902	+	687.5	f0_balb.idr	Intergenic	Intergenic	385967.0	NM_183188	268859.0	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	2.43178561129155	2.54298522449991	2.55053941398399	2.61491864656843	2.04255629313405	2.17786762042142	2.07443683754383	2.07757408975085	-4.01642191691173	0.000289903992293855	0.00493567855172103
Merged-chr17-34606458-4	chr17	34606338	34606538	+	983.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163379, intron 1 of 6)	intron (NM_001163379, intron 1 of 6)	577.0	NM_001163379	55979.0	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	5.67656243306087	6.24733004188774	5.54205715571568	4.65612335552999	6.13508346703225	6.20783170513158	5.51377206441022	5.32110775139064	0.298264706452925	0.619712272991134	0.836791403892028
Merged-chr6-40689383-4	chr6	40689291	40689491	+	893.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171003, intron 31 of 47)	intron (NM_001171003, intron 31 of 47)	60560.0	NM_001171003	232714.0	Mm.33401	NM_001171003	ENSMUSG00000068587	Mgam	6030407P20Rik|MGA	maltase-glucoamylase	protein-coding	4.49618633073738	4.30453163083091	4.49690855167793	4.73464163719911	4.33862786915204	4.41118076434701	4.16991326136668	4.18493970328291	-0.587078216218617	0.132703259715769	0.405729165096937
Merged-chr14-52197324-4	chr14	52197216	52197416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033618)	promoter-TSS (NM_033618)	-77.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	6.51576107986089	6.60264770198411	6.73229391587475	6.31640843724024	6.65176962138938	6.67653889603398	6.56446700549971	6.72750207365083	0.174487283160853	0.417781638833141	0.711469226750822
Merged-chr12-108206856-3	chr12	108206763	108206963	+	844.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159910, intron 5 of 5)	intron (NM_001159910, intron 5 of 5)	27125.0	NM_009832	12454.0	Mm.474441	NM_009832	ENSMUSG00000021258	Ccnk	AW123198|AW413594|CPR4|CycK	cyclin K	protein-coding	4.0604916452564	3.68316460924952	3.97341404496345	3.66925090991294	3.92489312359905	3.89738561636808	3.76212496867294	3.72125597336447	-0.0365505318848517	0.936831022233439	0.977136048115616
Merged-chr3-116508160-4	chr3	116508049	116508249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025517)	promoter-TSS (NM_025517)	26.0	NM_025517	66368.0	Mm.251228	NM_025517	ENSMUSG00000000339	Rtca	2310009A18Rik|AI450277|RPC|Rtcd1	RNA 3'-terminal phosphate cyclase	protein-coding	7.78099272217707	7.63106434563156	7.78994192816008	7.63083729535729	7.57632226234919	7.69590944755601	7.76725924099267	7.85134775575356	0.0227964003171196	0.893425929583215	0.960186686423126
Merged-chr1-155091502-4	chr1	155091410	155091610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8126.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	7.85730405301529	7.65795914491782	7.68018629937622	7.80183815563111	7.54148837165293	7.79777143647615	7.6916009356258	7.75564259633817	-0.0775966150089262	0.647822336746846	0.85185825899816
Merged-chr1-185193721-4	chr1	185193609	185193809	+	982.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10459.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	5.14263606927086	5.28782561135689	5.2941836405262	5.06550015409751	4.75406745311352	5.18377014982505	5.14959580747894	5.07436802463712	-0.29440940341922	0.351242985646409	0.658672265005478
Merged-chr10-17796258-4	chr10	17796154	17796354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138628)	promoter-TSS (NM_138628)	35.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	6.05696365892535	5.93731937864406	5.90217424932517	5.85707752330422	6.07153604904107	6.52819481531786	5.96294543656705	5.98929336728151	0.341861714167117	0.178062418676383	0.473836973534737
Merged-chr10-19549684-3	chr10	19549573	19549773	+	763.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42276.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	3.33043578956203	3.50730436169341	3.21597208798763	3.16536065824879	3.46122905550131	3.05905213244061	3.42180478810245	3.15324705381716	-0.0573274581163619	0.918932156438811	0.970210361825031
Merged-chr10-118140376-3	chr10	118140286	118140486	+	876.650024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1401.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	4.20183077352567	3.65088251037731	3.67164715865582	3.9938313754805	2.95313446632475	3.22888125392532	3.37695744287659	3.18572862407457	-2.65696156702505	1.70433491831739e-05	0.000443557057224545
Merged-chr3-96489239-3	chr3	96489124	96489324	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35961.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	3.32999471366058	3.21560281906652	3.33041072048632	2.44542621787902	5.28978003151128	4.89538804107772	4.87615395501453	5.11439611165785	8.85856248539183	4.59238422670916e-21	1.77652889604854e-18
Merged-chr17-34356108-4	chr17	34355997	34356197	+	801.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_079835, intron 1 of 8)	MTD|LTR|ERVL-MaLR	1275.0	NM_079835	547431.0	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	4.15057602986473	4.61484221922011	4.09941332975388	3.81837110165899	4.60225541070274	4.4698364142909	4.52105918280458	4.42221718649808	0.740231170227557	0.0806085531706522	0.307945266537884
Merged-chr5-122900422-4	chr5	122900329	122900529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013910)	promoter-TSS (NM_013910)	-79.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	7.1252753235728	7.07021608349265	6.90144099454618	6.936675204882	7.22994760531087	6.97938401762559	7.34745737069078	6.91017043973062	0.173947752445255	0.386960331537054	0.688001434742367
Merged-chr7-16246154-2	chr7	16246024	16246224	+	931.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007577)	TTS (NM_007577)	-1970.0	NM_176912	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	3.24460650575805	3.48263810482247	3.42421493071172	3.10996847049974	3.52568306995764	3.48168825649069	3.51651343772279	3.52924580768563	0.698756570455429	0.174308976458232	0.468671425048937
Merged-chr2-166733101-4	chr2	166733007	166733207	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19275.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	5.54055434780303	5.68265663380903	5.31968817301164	5.45296042183844	5.10236865479132	5.33511194566198	5.29332067077155	5.1200365069656	-0.530695276345175	0.0668744352513956	0.275795998045318
Merged-chr2-38436121-2	chr2	38436021	38436221	+	987.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER77B|LTR|ERVL	-75576.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	2.97543533864354	3.31589085524584	3.09268115720725	2.96998446563028	2.84731353762213	2.8845306502052	2.96521686871714	2.77710359975226	-0.984382840421795	0.111654589251382	0.369254379423133
Merged-chr17-31139650-4	chr17	31139536	31139736	+	925.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	4646.0	NM_009363	21785.0	Mm.1825	NM_009363	ENSMUSG00000024028	Tff2	SP|mSP	trefoil factor 2 (spasmolytic protein 1)	protein-coding	4.39921422549976	4.17499882236607	4.44157358910984	3.98256978240146	4.66692717173147	4.44146758320167	4.15111069445671	4.66305206396934	0.603974785472502	0.138266014944155	0.413646725009686
Merged-chr10-28323214-4	chr10	28323118	28323318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359356, intron 3 of 30)	intron (NM_001359356, intron 3 of 30)	248398.0	NM_001359356	19272.0	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding	6.35012118798015	6.03243940123337	5.9434951499958	6.76901634648479	6.11883520334663	5.79950165924248	6.45008251225332	6.23765063123203	-0.243042306324481	0.408708900239154	0.704479738712259
Merged-chr11-98773022-4	chr11	98772938	98773138	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145434, intron 1 of 7)	intron (NM_145434, intron 1 of 7)	2339.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	4.24965175296783	4.27230041666677	3.69096814643848	3.87744720060443	4.5698497605708	4.24612834655186	3.79712300783406	3.75077055642931	0.25963406607749	0.608774686146501	0.83078287866141
Merged-chr10-95323583-3	chr10	95323492	95323692	+	912.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001330138, exon 1 of 3)	5' UTR (NM_001330138, exon 1 of 3)	117.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	3.49299254815887	3.94806517117085	3.87482218567902	3.67058388962688	3.60999564804394	3.89670834568415	3.76111093889918	3.82446085966492	0.0468901610525542	0.920982922747317	0.97071991400163
Merged-chr14-19968475-4	chr14	19968389	19968589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285908, intron 1 of 3)	intron (NM_001285908, intron 1 of 3)	8204.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	5.93754116588927	5.78418964167743	5.318072130384	5.32169380343925	5.78797557362482	5.91366488105922	5.61176661662123	5.41050491228403	0.146396927831355	0.630967119236483	0.843124386449892
Merged-chr2-60283313-7	chr2	60283186	60283386	+	927.357117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025422, intron 1 of 4)	intron (NM_025422, intron 1 of 4)	1198.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	3.7400700865267	4.47149429913112	4.02590817318904	3.68884216433501	4.284245394902	4.51400385696639	3.95698558819024	4.41888714920094	0.725022875770448	0.127138854056157	0.396656849946709
Merged-chr10-83922234-4	chr10	83922126	83922326	+	955.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	178471.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	4.61238418064404	4.66581449846696	4.88163405366761	4.89492386959493	4.77167920178009	4.70167762539494	4.8920694236807	5.03946328325474	0.157118865480026	0.641979680209849	0.848955111735845
Merged-chr13-110363938-4	chr13	110363827	110364027	+	922.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6755.0	NM_177713	238875.0	Mm.30533	NM_177713	ENSMUSG00000046006	Gapt	9830130M13Rik	Grb2-binding adaptor, transmembrane	protein-coding	5.02141400223785	4.95996730066467	5.11589385212308	5.60373364080452	4.6663078769141	4.32105482238952	4.74995908076285	4.60173661804801	-1.25860926087565	0.000738153400391266	0.0105588868340936
Merged-chr9-21909613-4	chr9	21909537	21909737	+	856.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001324531, exon 5 of 5)	3' UTR (NM_001324531, exon 5 of 5)	8546.0	NM_031874	19340.0	Mm.260157	NM_031874	ENSMUSG00000019066	Rab3d	C130057E11Rik	RAB3D, member RAS oncogene family	protein-coding	3.62294463355889	3.88985104645422	3.73579706554007	4.23581459700961	3.2556697630419	3.41075052190811	3.77263911100508	4.29053134187484	-0.410185548099662	0.488640524600285	0.761377570765248
Merged-chr10-43706222-2	chr10	43706147	43706347	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39911.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	3.33657308663199	3.26501484073394	3.49435397680444	3.10551523791651	3.27446005755342	3.13324419145728	3.42956049915773	3.33519929444244	0.00323978901657788	0.995250522452066	0.998265838137867
Merged-chr1-86038360-4	chr1	86038240	86038440	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7523.0	NM_001144993	72792.0	Mm.54981	NM_001144992	ENSMUSG00000026227	2810459M11Rik	-	RIKEN cDNA 2810459M11 gene	protein-coding	4.7381010585186	4.94999848512695	4.69670011484873	4.78309140401951	5.15295225316765	4.9564145783331	5.24707758003981	5.21433602766896	0.687431745309342	0.0285031681758959	0.161982196214937
Merged-chr12-98265810-4	chr12	98265710	98265910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2825.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	7.02325977928322	6.76447483340806	7.28842773692979	7.21111474618091	6.84559466511769	7.05896711119175	6.93925796712687	6.83526627035537	-0.237983592603045	0.25531319556424	0.566865111326869
Merged-chr7-45097684-4	chr7	45097603	45097803	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357117, intron 4 of 6)	intron (NM_001357117, intron 4 of 6)	-5490.0	NM_001355045	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	6.01910888743099	5.23894047960522	6.48129329893209	6.77821648767255	4.73847005090274	4.50516181866643	5.19155207937957	5.14122700395814	-2.2780228052596	0.000304559085132894	0.00513727511186092
Merged-chr19-45018043-4	chr19	45017926	45018126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130526)	promoter-TSS (NM_001130526)	-109.0	NM_001130526	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	5.62065399373067	5.10979379333412	5.05739014985359	5.50134648985358	5.4622549510935	5.47014264822699	5.44155762142145	5.2916737445839	0.115661881517392	0.702825389918327	0.880421119462815
Merged-chr10-63024755-3	chr10	63024641	63024841	+	858.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001079824)	promoter-TSS (NM_001079824)	229.0	NM_026085	67307.0	Mm.368563	NM_026085	ENSMUSG00000020072	Pbld2	3110049J23Rik|Mawbp	phenazine biosynthesis-like protein domain containing 2	protein-coding	3.77732425728693	3.53828170915471	3.91779237968821	3.45165206716886	3.65197127407664	3.49266826898238	3.80949382035902	3.87043651645817	0.127803064580171	0.79570719706629	0.920897975671128
Merged-chr12-75687699-4	chr12	75687593	75687793	+	985.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-18156.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	5.17325707786637	4.82161377826902	4.98150925041504	5.02187645576303	5.09293188477064	5.22127643341478	4.99138427962115	4.66611409230197	0.0126272261605484	0.969372388684065	0.988962967136451
Merged-chr6-59174181-4	chr6	59174056	59174256	+	963.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-34714.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	4.83140718194764	4.47969850345814	5.02713191206686	5.31428284241179	4.43141648859192	4.22617510255808	4.80875313359139	4.59880500206866	-0.902085529282342	0.0258294820383315	0.151792990588375
Merged-chr13-97607332-4	chr13	97607234	97607434	+	982.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47334.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	4.99778265690804	4.87444440765193	5.10369402819744	5.19787456903349	5.37807890367591	5.34265377177316	5.37468398653033	5.10022587861446	0.45495893968532	0.133919861883559	0.40751921033773
Merged-chr14-75148435-3	chr14	75148336	75148536	+	704.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	12011.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	3.57024601756227	3.79588619346355	3.5120959222017	3.93159167459213	3.54082623706717	3.62751794063544	3.71684381852746	3.87313149061621	-0.111372482593151	0.820832541671232	0.931443689364036
Merged-chr9-7764789-4	chr9	7764698	7764898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152989, intron 1 of 5)	intron (NR_152989, intron 1 of 5)	633.0	NR_152989	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	6.43580816532874	6.61336991958402	7.04831716830836	6.33546047999509	7.15434724155097	6.86786401574376	7.1637948018404	6.73101620164018	0.522868541491355	0.0323711596930868	0.176158010381822
Merged-chr17-80128077-4	chr17	80127981	80128181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 1 of 6)	intron (NM_176963, intron 1 of 6)	610.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	6.82532316520039	6.80559396630052	7.27968434917605	7.11533325186796	6.59976059383391	6.36175836537849	6.51936954331595	6.61430368398478	-0.699258689911706	0.00142818018423729	0.0179446491321847
Merged-chr2-28592658-2	chr2	28592558	28592758	+	769.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9379.0	NM_001290484	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	3.14702224433469	2.86907430012419	2.82390350770667	2.80754743508344	2.96348464223082	3.47597955177716	3.01614563564623	3.25553578491426	1.11335306373609	0.0653154786361615	0.272051638705795
Merged-chr12-70713702-4	chr12	70713592	70713792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111822.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	5.97261590674614	5.55769674756828	5.35109827233669	5.56969348295138	5.41852681898077	5.39898114843464	5.41361463827998	5.25104920458239	-0.440500043127648	0.130165361329714	0.401586493035134
Merged-chr19-8818692-4	chr19	8818548	8818748	+	847.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081196)	promoter-TSS (NM_001081196)	646.0	NM_027412	70387.0	Mm.261082	NM_027412	ENSMUSG00000071660	Ttc9c	2210019E14Rik|6330408J23Rik	tetratricopeptide repeat domain 9C	protein-coding	3.59662259333456	3.782585349052	3.65285618066254	3.61311056192482	3.92566330364645	3.82440692173428	3.52674848429163	3.94218370236521	0.474008463945064	0.309305860313928	0.621622697166796
Merged-chr9-107968260-4	chr9	107968186	107968386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011634, intron 10 of 14)	intron (NM_011634, intron 10 of 14)	-7281.0	NM_023738	74153.0	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	5.66295930818168	5.77099687086676	5.68948341742299	5.83079461251463	5.3465849839972	5.52222132645482	5.7099134213879	5.99691391565173	-0.147631834505836	0.599289070956631	0.826313790008756
Merged-chr19-53496810-3	chr19	53496706	53496906	+	977.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-32010.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	3.12370066051865	3.50444638616189	3.67317168442146	3.52988678112105	2.9017707592288	2.8800080609158	2.98391524332441	2.76979388540624	-2.58183804098805	0.000161416086029353	0.00304033754630414
Merged-chr7-112299877-3	chr7	112299790	112299990	+	972.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001193305, intron 3 of 25)	intron (NM_001193305, intron 3 of 25)	-68418.0	NM_027587	100504195.0	Mm.291129	NM_027587	ENSMUSG00000030771	Micalcl	4921517J23Rik	MICAL C-terminal like	protein-coding	4.82324048690785	4.8331003083551	4.91506896400406	4.94469260059696	3.86033315836891	3.9605975520234	3.94392069302164	3.89537174836754	-2.45873621526083	4.8266070792486e-09	2.72013511713251e-07
Merged-chr10-39386374-4	chr10	39386272	39386472	+	897.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 1 of 13)	intron (NM_001122893, intron 1 of 13)	16573.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	5.0148819266177	5.18074899813245	5.1655581761214	5.41785634193381	4.19653002707389	4.5535680021595	4.54144355516462	4.3655282870942	-1.71664273812856	1.76243860770974e-06	5.84297241072063e-05
Merged-chr2-144459164-4	chr2	144459070	144459270	+	933.915466	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033459)	promoter-TSS (NR_033459)	-110.0	NR_033459	668917.0	Mm.152805	NR_033459	ENSMUSG00000083674	Zfp133-ps	Zfp133	zinc finger protein 133, pseudogene	pseudo	3.8662343527334	3.77405730036573	4.06999867923492	4.00073528079205	4.07863756722893	4.04323032442178	4.18458873221266	4.39627371383894	0.63887374073475	0.130556815051805	0.402170679947429
Merged-chr8-26963520-4	chr8	26963420	26963620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13816.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	7.87729586666804	8.18819526649917	7.96409532653251	7.98179582031802	7.8740418208357	7.99571186034654	7.93952085759891	7.61200033593822	-0.189004789170208	0.28037413558556	0.592346638474506
Merged-chr5-99576053-4	chr5	99575930	99576130	+	881.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	153030.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	3.89822984824314	3.93750215464356	4.14742626196677	4.28992743601939	3.92961184450723	3.96451396182133	4.17304767528038	4.46234734993013	0.144383852949502	0.745306438598107	0.899471958747455
Merged-chr14-75179805-4	chr14	75179708	75179908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	43383.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	7.51768695148683	7.73750729609855	7.35011016077339	7.39563674297109	7.73885970713946	7.70555698770263	7.5539110467334	7.84626323191307	0.275721994988792	0.131861060195443	0.404250549856988
Merged-chr17-34143197-4	chr17	34143100	34143300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2216.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	7.85507564718823	7.86183075800902	7.54604878368893	7.51290426470843	7.81999012619365	7.79547578029526	7.70522039273967	7.61287379730938	0.0520925888446746	0.774410059197928	0.911820181152855
Merged-chr7-141540859-4	chr7	141540736	141540936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142681)	promoter-TSS (NM_001142681)	-979.0	NM_001142681	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	7.71343367325263	7.50269741128579	8.13364076401067	7.87560158690629	7.11660047734993	7.25882873683503	7.31371041680311	7.61939014202828	-0.648667136281298	0.0022577586744769	0.025684034631707
Merged-chr3-122984598-4	chr3	122984488	122984688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133857)	promoter-TSS (NM_133857)	-141.0	NM_133857	99526.0	Mm.491248	NM_133857	ENSMUSG00000039701	Usp53	AA939927|Phxr3|Sp6|mKIAA1350|mbo	ubiquitin specific peptidase 53	protein-coding	8.68197146531713	8.67854845557024	8.61590594082965	8.64989338546156	8.78912202577751	8.821067294298	8.89244459301785	8.69520664284075	0.180691307487569	0.201097290242877	0.503319526783563
Merged-chr15-39737662-4	chr15	39737573	39737773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8257.0	NM_001289506	75766.0	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	6.46167549883875	5.96743530858971	6.30316514668876	6.82535054917392	6.12364625534858	6.4415276851277	6.5406657741878	6.42444773278926	-0.0851958658103488	0.753547386587835	0.902798885097597
Merged-chr17-46140020-4	chr17	46139919	46140119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029338, intron 2 of 4)	intron (NM_029338, intron 2 of 4)	4179.0	NM_029338	75564.0	Mm.17993	NM_029338	ENSMUSG00000023966	Rsph9	1700027N10Rik	radial spoke head 9 homolog (Chlamydomonas)	protein-coding	5.73971709709899	5.98437756115415	5.61292971864016	5.3443267002547	5.84134792287849	5.61820305903238	5.75895248347081	5.66160276711433	0.0847610044769615	0.765868773831687	0.908405583340288
Merged-chr10-127350803-3	chr10	127350684	127350884	+	873.861145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008382, exon 2 of 2)	exon (NM_008382, exon 2 of 2)	1064.0	NM_008382	16326.0	Mm.3510	NM_008382	ENSMUSG00000047492	Inhbe	-	inhibin beta-E	protein-coding	4.18901619842687	3.85697777523849	3.77107916109131	3.80554949746518	4.20158012350102	3.64799898681823	3.80955539936884	3.97188827207602	0.0697154499004766	0.882090419155924	0.955564392066166
Merged-chr11-69801097-3	chr11	69801019	69801219	+	854.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010198, intron 1 of 5)	CpG	597.0	NM_001291104	14166.0	Mm.269011	NM_010198	ENSMUSG00000042826	Fgf11	Fgf-11|Fhf-3|Fhf3	fibroblast growth factor 11	protein-coding	4.09892501848581	3.33428849172232	3.51009196650349	3.2401888008459	3.91454028292179	3.96160466192483	3.7217643859323	3.8358187802756	0.826356924616778	0.123192301449065	0.389166732861841
Merged-chr3-22090037-3	chr3	22089960	22090160	+	903.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	13408.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.26263525504989	3.15276881635682	3.31926006767982	3.41995937136178	3.45100378326534	3.31469210898735	3.0687908462696	3.20270625277625	-0.0914300210545759	0.868516119939291	0.950757933022268
Merged-chr19-3935223-4	chr19	3935118	3935318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161428)	promoter-TSS (NM_001161428)	32.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	7.08204200272291	7.13086192756596	6.92007409753859	7.01793463310494	6.94649514433954	7.12342120246937	7.17036689791598	6.87432931648689	-0.0132507628557181	0.945042777216297	0.980260935841461
Merged-chr5-32742337-4	chr5	32742201	32742401	+	794.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347332, exon 3 of 9)	5' UTR (NM_001347332, exon 3 of 9)	4041.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	3.49531184997105	3.41825549684077	3.11090641750533	3.41221393543576	3.7163459976583	3.43097880086006	3.81821206983884	3.69909231602646	0.987765428930512	0.0550094893351755	0.245107854827042
Merged-chr1-156036501-4	chr1	156036397	156036597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160018)	promoter-TSS (NM_001160018)	-17.0	NM_001160018	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	7.60557936611882	7.69133593163663	7.55173459631748	7.53063073328902	7.92703810047185	8.07213632885908	8.10731900596253	8.01810789742966	0.567817895419747	0.000459184822712389	0.00720553714635034
Merged-chr11-6444628-4	chr11	6444530	6444730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347064)	promoter-TSS (NM_001347064)	-187.0	NM_001347064	77605.0	Mm.27624	NM_029938	ENSMUSG00000041126	H2afv	C530002L11Rik|H2a.z-2|H2av|Tg(Wnt1-cre)11Rth|Wnt1-Cre|Wnt1::Cre|Wnt1cre	H2A histone family, member V	protein-coding	8.81187415123311	9.09489313548611	8.83317770681224	8.87356378680894	8.91451707594347	8.97094413427003	8.68201187694168	8.62640795291796	-0.125800660852495	0.436709451222852	0.725278104435332
Merged-chr2-32712363-4	chr2	32712316	32712516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_037217)	TTS (NR_037217)	368.0	NM_130860	107951.0	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	5.11215254329617	4.93907967711425	5.08058749361961	4.77949975285633	5.1508481390618	5.11699699958097	5.20889689509719	5.07712015086269	0.336270160513963	0.276801491162576	0.58879965876495
Merged-chr12-35021513-4	chr12	35021363	35021563	+	827.55835	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25726.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	4.35706695305996	3.72619790436752	4.02486519803865	4.26339477814608	3.10649563857714	3.42833549960741	3.36814670446863	3.3779817504992	-2.76804879360071	2.02664128353719e-06	6.62020651312041e-05
Merged-chr6-54781165-4	chr6	54781067	54781267	+	682.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-35749.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	4.0441027863797	3.96372421483258	3.94650322223455	3.91714878662036	3.87752160119779	4.01724362764595	3.82512903377856	4.50994390404041	0.314086474780696	0.485544571176073	0.75935616267312
Merged-chr19-5604064-4	chr19	5603959	5604159	+	891.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362372, intron 10 of 12)	intron (NM_001362372, intron 10 of 12)	2186.0	NM_026616	68209.0	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	3.6231300177412	3.90831857371046	3.7665828354388	3.6644220374683	4.88600403702387	4.75015717524203	5.01794077580007	4.87384430296056	2.7420920848516	1.51763166892718e-11	1.33033872614e-09
Merged-chr11-116918803-4	chr11	116918701	116918901	+	819.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172948)	promoter-TSS (NM_172948)	-62.0	NM_172948	268510.0	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	4.54039922393764	4.72671183886553	4.08628134061257	4.17868433575159	4.58178356269251	4.41609677313723	4.48120805053409	4.18833162323445	0.0610057913616902	0.882866127994677	0.955851912334709
Merged-chr3-89279667-4	chr3	89279574	89279774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010107)	promoter-TSS (NM_010107)	-29.0	NM_010107	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	6.12304795924401	5.70312679427129	5.71059631694517	6.06700491701634	5.61515159783202	5.86081854898349	5.99692279229065	5.35328743483476	-0.319558278008207	0.264606351816957	0.576566406596513
Merged-chr11-63402930-1	chr11	63402830	63403030	+	635.0	f0_c57.idr	Intergenic	Intergenic	270127.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	2.53066524469472	2.80072743807552	2.613347153608	2.30194887983403	3.10862033061758	3.31462802574378	3.32755527795016	3.08454986785019	3.25990032284274	5.98765570618246e-06	0.000174170553947839
Merged-chr5-113908188-4	chr5	113908139	113908339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 1 of 10)	CpG	467.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	6.17158136758433	6.26599410525056	6.1517408725148	6.68248483678707	6.28083477289701	6.52253518215815	6.43441539925994	6.30571092647229	0.0365784172046128	0.882216679613966	0.955654262385787
Merged-chr3-69163301-4	chr3	69163186	69163386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-int|LTR|ERVL	32053.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	6.02922795233189	6.14284069748556	5.81923998164494	5.9224825936045	6.23522952761855	6.13985442800052	6.30323431250236	6.0259897337601	0.312833977134398	0.186296308817441	0.48416769991663
Merged-chr9-118887335-3	chr9	118887228	118887428	+	891.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 12 of 13)	ORR1B2|LTR|ERVL-MaLR	-39208.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	3.78507077647507	3.98983795092362	4.12800321375913	3.66801579662982	3.64723894453792	4.37864003581764	4.02094844280706	3.83815371540297	0.262129464130782	0.58658908976571	0.81876311050953
Merged-chr9-7868208-4	chr9	7868110	7868310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	4960.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	7.54671786998117	6.66374015184016	6.91283194960118	7.1199726569134	7.0531606403	7.02074820703659	7.2187174316432	6.90793599723417	-0.0624149538269951	0.793590466830801	0.920133178669972
Merged-chr12-102878520-4	chr12	102878425	102878625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172806)	promoter-TSS (NM_172806)	-119.0	NM_172806	238386.0	Mm.63456	NM_172806	ENSMUSG00000041702	Btbd7	5730507E09Rik|8030448M07|E130118E17Rik|FUP1|mKIAA1525	BTB (POZ) domain containing 7	protein-coding	7.7138171061364	7.75196248067072	7.62184871601426	7.77556981799598	7.97838659172893	7.97922439041837	7.7332785888262	7.56269927788768	0.141281459383308	0.429509906395313	0.720394119122296
Merged-chr1-107513656-4	chr1	107513556	107513756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011111, intron 1 of 7)	intron (NM_011111, intron 1 of 7)	2146.0	NM_011111	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	6.28179775007334	6.00071578765445	6.01128458047192	6.28932753269345	5.88385720746714	6.24950971820544	5.60788054961634	5.8938595604795	-0.369844889287753	0.156831403567768	0.442962679042505
Merged-chr2-133499051-4	chr2	133498939	133499139	+	874.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53120.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	3.50714338746252	3.57424147248036	3.32324724562159	3.75771327936182	3.67886550005083	3.50108412366517	3.79552766483441	3.71654468152908	0.352563029958418	0.482773768793235	0.757421686487144
Merged-chr3-65820087-3	chr3	65819991	65820191	+	936.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001166659, exon 12 of 13)	exon (NM_001166659, exon 12 of 13)	138158.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	3.57456445308567	3.87289864174231	3.786099164324	3.98797525926773	3.51353920898073	3.69125330507034	3.56176550196598	3.62915779844996	-0.710929006423091	0.139412600396818	0.415146612711589
Merged-chr17-50469277-4	chr17	50469192	50469392	+	914.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40255.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	4.52841913595687	4.53905692389748	4.52913752100649	4.68651737102095	4.56752443260411	4.61838283724552	4.38245215454912	4.25820943434254	-0.254810005148496	0.487428350188926	0.760781127490956
Merged-chr15-99973206-1	chr15	99973106	99973306	+	1000.0	f0_balb.idr	promoter-TSS (NR_028124)	promoter-TSS (NR_028124)	81.0	NR_028124	70281.0	Mm.484037	NR_028124	ENSMUSG00000100084	2310068J16Rik	-	RIKEN cDNA 2310068J16 gene	ncRNA	5.85082024478488	5.87253054117669	6.20184056651187	5.74377762442809	5.78706288162516	6.05056587657771	5.86839587014848	5.8942456538635	-0.0284693712264618	0.911612446403839	0.966971601135236
Merged-chr3-21936835-4	chr3	21936663	21936863	+	751.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139889.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.07192148637055	3.13400451666952	2.93881101913333	3.27434096856656	3.25302487815457	3.36189494276318	3.12327620461855	3.30235083342847	0.525201495917931	0.353263525140651	0.660145561984416
Merged-chr8-41368275-4	chr8	41368177	41368377	+	795.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019734, intron 1 of 13)	intron (NM_019734, intron 1 of 13)	6420.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	3.57817857842468	3.13477494605767	3.47199012426937	3.38671395394481	3.62091885213512	3.40686529196195	3.56376799723331	3.67487473627622	0.576266856348127	0.259982732720139	0.571733893542397
Merged-chr1-10009161-4	chr1	10009052	10009252	+	718.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110971)	promoter-TSS (NR_110971)	-16.0	NM_145692	69312.0	Mm.386795	NM_027033	ENSMUSG00000025916	Ppp1r42	1700011J18Rik|4930418G15Rik|Lrrc67|TLRR	protein phosphatase 1, regulatory subunit 42	protein-coding	4.18961129722422	4.31773662670175	4.09355625065283	4.2134284107172	4.13914849374419	4.26807483154238	4.26103499160893	4.44005845964271	0.166877403288623	0.669915262789332	0.863713564883384
Merged-chr4-57928039-3	chr4	57927946	57928146	+	693.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11782.0	NM_178727	242484.0	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	3.21508710598021	3.8178198153296	3.41358108521481	3.18133021521318	3.70306945838096	3.75861081291639	3.72226655778569	3.68775913411488	0.920781680674744	0.0804336258075413	0.307491543657285
Merged-chr11-116885476-4	chr11	116885405	116885605	+	910.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31505.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	3.85109191393872	3.6520427156034	4.02978865955455	3.39942992683559	3.75564647671986	3.58254045924973	3.45284849198107	4.06787616725344	-0.0256533246468194	0.960954287852548	0.986031655491274
Merged-chr2-122753932-3	chr2	122753837	122754037	+	684.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11422.0	NM_001162503	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	3.57165314710067	3.29160733453178	3.20798201294247	3.70170839606067	3.75812981016984	3.74130239752633	3.55781315256448	3.51612254848576	0.560943260795984	0.291153413141951	0.603459577020294
Merged-chr11-67052592-4	chr11	67052472	67052672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025510)	promoter-TSS (NM_025510)	46.0	NM_025510	66358.0	Mm.22511	NM_025510	ENSMUSG00000020910	Adprm	2310004I24Rik|MDS006	ADP-ribose/CDP-alcohol diphosphatase, manganese dependent	protein-coding	6.3815305454076	6.03049980105042	6.48017786182329	6.35830068946781	6.10725897859608	6.02070251064477	6.10958689814319	6.15690817457831	-0.337609690533264	0.149900550958524	0.432360854406563
Merged-chr2-21215469-4	chr2	21215356	21215556	+	939.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177588)	TTS (NM_177588)	9732.0	NM_177588	208967.0	Mm.268841	NM_177588	ENSMUSG00000048550	Thnsl1	AW413632	threonine synthase-like 1 (bacterial)	protein-coding	4.22435245611126	4.54917873571239	4.3180016574816	4.31693001190027	4.49271972084403	4.08296708714881	4.64589964573638	4.35938231570279	0.138783611365619	0.724990855898719	0.890570784916989
Merged-chr4-41558689-3	chr4	41558583	41558783	+	881.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027993, intron 1 of 5)	L3|LINE|CR1	10844.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	2.99205350983391	2.96825820258324	2.91370288498076	2.68667034581243	3.3931986467271	3.39289239168654	3.7266357540376	4.21566329369295	3.15390939125091	2.70847535963016e-07	1.06160004197751e-05
Merged-chr14-27178362-3	chr14	27178253	27178453	+	983.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	34360.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	4.72077284165965	4.50585411554504	5.29962372425974	5.82074226275236	4.25308119673169	4.03427317770402	4.39998064048648	4.09341433272097	-2.15740714197158	5.54916109423699e-06	0.00016261166633458
Merged-chr11-107334338-3	chr11	107334242	107334442	+	794.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	136378.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	3.09709907583015	2.9365961801769	2.98164283367436	3.12835433500709	2.88977028444478	3.08983219207264	2.8457322453811	2.91819521923559	-0.4575633557254	0.440789082762374	0.728159258307256
Merged-chr17-86125976-4	chr17	86125882	86126082	+	912.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030133, intron 7 of 20)	intron (NM_030133, intron 7 of 20)	19193.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	4.47389473252832	4.20927628310007	4.43210266385556	4.91834144503688	4.69880971153315	4.26956215449362	4.49496956245687	4.42932502729411	-0.146006847505437	0.724165203146296	0.89006345825995
Merged-chr7-97076752-3	chr7	97076648	97076848	+	903.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5003.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	3.42051651491182	3.34699121535052	3.30558615347523	3.70702618001746	3.38268312645937	3.64238915469876	3.23310369321745	3.24233500283804	-0.286785032312419	0.60014580903561	0.826731739315186
Merged-chr13-17018073-3	chr13	17017964	17018164	+	857.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138654, intron 12 of 13)	Lx5b|LINE|L1	676701.0	NM_138654	192136.0	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	5.83482925807425	5.42421704402797	6.15141053050547	6.30224966838848	3.48217079613516	3.96354932478937	3.80219857359348	3.81553837783725	-7.28202012887991	7.16409710744288e-14	9.63957028375571e-12
Merged-chr5-113872401-4	chr5	113872321	113872521	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 2 of 10)	intron (NM_011779, intron 2 of 10)	36285.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	5.28010705058892	4.93017655381685	4.90295420393716	5.3567646591757	4.87137598316649	4.88330940429828	4.59600798586079	5.03853408124944	-0.566636304740128	0.0964139361913561	0.340242347924034
Merged-chr2-27247391-3	chr2	27247293	27247493	+	938.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138665)	promoter-TSS (NM_138665)	-90.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	3.68323300939271	3.66288917179486	3.41333755063891	3.67396810248205	3.42018516587886	3.5272784702809	3.66813480673535	3.41165535726222	-0.358316865920368	0.469321427469967	0.748251025868274
Merged-chr14-65342788-3	chr14	65342684	65342884	+	808.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15892.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	4.157389212486	3.58002698692851	4.27919109389208	4.21390818377827	3.80309377118205	3.88450582218451	3.9096948605549	4.02149773202188	-0.498024522346835	0.288515581705207	0.600523083536054
Merged-chr1-151338422-4	chr1	151338307	151338507	+	993.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6079.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	5.0337598852842	4.86753334697206	4.89609504208803	4.85591828709425	5.00217820700918	4.83410880575864	5.13354140419968	5.12556166486658	0.239699669110998	0.444682377848071	0.731044175244865
Merged-chr10-80054102-2	chr10	80054002	80054202	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037741)	promoter-TSS (NM_001037741)	83.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	5.68022658855438	6.11733975179779	6.11565592108893	5.83533344223529	5.88251810140862	5.96210060817674	6.06492946007455	5.75639815244562	-0.0409715020119345	0.873186060971532	0.952435247820927
Merged-chr11-98787538-2	chr11	98787438	98787638	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7978.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	2.82990226256688	2.96447675442621	2.89648042856123	2.72625362999816	3.03220265052877	3.13023118453756	3.00832387013171	3.0756085457164	0.915002262685673	0.116021035537658	0.376814258465732
Merged-chr11-29870390-4	chr11	29870287	29870487	+	881.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 7 of 41)	L1M2|LINE|L1	-44719.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	4.49763544635041	4.3107226423882	4.83855065043044	5.17879034950101	4.57596923878517	4.39083582876752	4.60054658938501	4.45150879577569	-0.560775872997823	0.171754232448275	0.465089336091783
Merged-chr8-41376184-4	chr8	41376104	41376304	+	955.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1507.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	5.36246575889963	5.03613497894602	5.00853233773005	5.1005888643956	5.68087597202395	4.94649738532387	5.46911351711197	5.49280293466048	0.560051674643515	0.0794211848689998	0.305137800710471
Merged-chr8-46792868-4	chr8	46792751	46792951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	53106.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	6.06521021194	5.92332536922746	5.57719717417408	5.91405528548614	5.91257495302766	6.15718186672885	6.20462818732941	5.86488231902912	0.241889449046866	0.344928808623912	0.653300542003711
Merged-chr17-64579991-4	chr17	64579911	64580111	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21638.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	5.28884599691296	5.10155186067816	5.42895625388091	5.204840477407	5.35119445471428	5.1307268053477	5.07428300216203	5.25619924100712	-0.0711216820904638	0.811144535794542	0.926883359837906
Merged-chr11-79214212-4	chr11	79214110	79214310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28814.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	7.67309930078176	7.79259996079953	7.58191932846324	7.4568650450345	7.46909995134508	7.73264340494587	7.50035870520571	7.06712309977907	-0.218682792096669	0.282411907488433	0.594592148794809
Merged-chr11-23727703-4	chr11	23727612	23727812	+	811.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 16 of 17)	intron (NM_001033654, intron 16 of 17)	43258.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	3.49402458488216	3.2686835438286	3.55106371632398	3.79133959905857	3.50168586727953	3.77529880309239	3.78474477602989	3.54913664940128	0.317400641991677	0.54012640357646	0.792546893981918
Merged-chr17-83430780-4	chr17	83430649	83430849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357886, intron 5 of 21)	intron (NM_001357886, intron 5 of 21)	79818.0	NM_001357886	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	5.6201425739657	5.66269883316986	5.92382770790388	5.67296697445078	5.67097599114191	5.36754159438704	5.48364691761559	5.81175013979157	-0.201603454497998	0.459115368540675	0.74170765693035
Merged-chr1-58423567-2	chr1	58423472	58423672	+	997.5	f0_balb.idr|f0_c57.idr	intron (NM_001042634, intron 1 of 12)	CpG	516.0	NR_027854	12747.0	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	4.95939045712379	5.56651012077014	5.28406171321558	4.64339972758779	5.19775401022541	5.24119607434279	4.78143671702819	5.09626792725679	-0.11160320839142	0.763682283510432	0.90733001599047
Merged-chr2-155099641-3	chr2	155099594	155099794	+	649.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040634, intron 1 of 2)	intron (NR_040634, intron 1 of 2)	385.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	3.42194030697922	3.20061622402262	3.36862915856914	3.56802615100325	3.36341415789721	3.30248712380441	3.18180808994612	3.31077006647632	-0.400740603445181	0.455145668216836	0.738759344127111
Merged-chr12-69419809-3	chr12	69419705	69419905	+	768.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47655.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	3.28607144941682	3.47204212254225	3.28642253382692	3.3409647432158	4.11859825242464	3.72604608630175	4.16854558015476	3.95047858420867	1.99835885814585	4.63163029002252e-05	0.00105800645832321
Merged-chr5-125484213-7	chr5	125484070	125484270	+	957.228577	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030210, intron 2 of 17)	B2_Mm1a|SINE|B2	8297.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	4.60709971037731	4.70371224237324	4.73710714431946	4.14770071312247	5.15043952967057	5.38413443808297	5.03691441040989	5.36807169679387	1.39509866339792	7.31950170832826e-05	0.00155992970181272
Merged-chr4-95215369-4	chr4	95215272	95215472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-163150.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	7.57597058755344	7.20686670865082	7.1199364717251	7.31946847021661	7.02533865895612	7.14782436091829	6.83927519257425	7.06704985038898	-0.39972266289909	0.045140742410822	0.2172808169048
Merged-chr7-75642527-4	chr7	75642416	75642616	+	915.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	186982.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	5.56951694128918	5.17214755430835	5.12962139294477	5.65829768826097	4.74237026821691	4.63897725116396	4.62335807670253	4.16218158423284	-1.68299598537872	7.8145662180885e-06	0.000220990468350148
Merged-chr2-132600286-4	chr2	132600181	132600381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 1 of 3)	intron (NR_033469, intron 1 of 3)	2085.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	6.92939255895611	6.61536681194886	5.96930234037888	6.22886568799918	6.63965379465137	6.07372694643725	6.44158998191855	6.47016188968926	-0.0784150921608641	0.782636793868435	0.91529005173258
Merged-chr8-18936405-4	chr8	18936311	18936511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176951, intron 6 of 6)	intron (NM_176951, intron 6 of 6)	14460.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	8.12198575498299	8.13939825520104	8.36094404284423	8.35898301826299	8.2906551542639	8.32625395416677	8.36838627913388	8.02523632490007	0.00767597231208156	0.963437381195078	0.986954574291407
Merged-chr17-83666774-4	chr17	83666663	83666863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34868.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	6.44028853768106	6.19776441465283	5.93583198119567	6.22925246492052	6.39551763625595	6.58278735950095	6.39175131797547	6.42005680083091	0.34729428499202	0.128624681652748	0.399048782433028
Merged-chr16-36631776-4	chr16	36631687	36631887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	L1MB3|LINE|L1	34290.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	6.60863033224443	6.8974525102899	6.85006601525571	6.23484138550259	6.90352737457777	6.70607737705808	6.26040078489794	6.22665484019034	-0.143081182373721	0.600706328601587	0.826921018931019
Merged-chr12-69924243-3	chr12	69924147	69924347	+	708.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178628, intron 2 of 14)	PB1D10|SINE|Alu	-31084.0	NM_201519	399510.0	Mm.291936	NM_201519	ENSMUSG00000034761	Map4k5	4432415E19Rik|GCKR|KHS|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding	3.53023256102613	3.60211996428004	3.36625909228236	3.11612934019354	3.49847973723644	3.29064934546258	3.65972674728835	3.2423395662614	0.0928046745560049	0.86602263842134	0.949809327892027
Merged-chr15-95797368-4	chr15	95797274	95797474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	6531.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	6.0526227795097	5.96154899444576	6.03325735215716	5.80418634646523	5.95308518891476	5.62058279826661	6.06238575314917	5.87587114310642	-0.0970710544349496	0.700956682575621	0.879454675268923
Merged-chr16-18108410-4	chr16	18108310	18108510	+	760.729126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19220.0	NM_011172	19125.0	Mm.28456	NM_011172	ENSMUSG00000003526	Prodh	Pro-1|Pro1|Ym24d07	proline dehydrogenase	protein-coding	3.86411923435935	3.9867450288714	4.06864412781066	3.84257655612946	3.92650632203003	4.09428735890713	4.41308537559008	4.20023784480304	0.602401818490878	0.157102840102719	0.443500264079873
Merged-chr15-36902028-4	chr15	36901932	36902132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105103.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	5.81390759866285	5.62746650238817	5.49145156822329	6.04379292869553	5.83298250239759	5.54352816664274	6.15167094472585	6.02859604579888	0.211038207264378	0.463272068468621	0.744647770407916
Merged-chr13-103334558-3	chr13	103334452	103334652	+	869.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175171)	promoter-TSS (NM_175171)	-60.0	NM_175171	328329.0	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	3.16875116480969	3.0608801017978	3.2801355725249	3.58846711459038	3.1409438385426	3.21985931147004	2.90587239340577	2.84073101688423	-1.02876844411844	0.101854941133488	0.350255222713201
Merged-chr5-86172872-4	chr5	86172755	86172955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172712)	promoter-TSS (NM_172712)	-112.0	NM_172712	231380.0	Mm.34012	NM_172712	ENSMUSG00000035898	Uba6	4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2	ubiquitin-like modifier activating enzyme 6	protein-coding	8.44516127619866	8.61320818564751	8.75760094311156	8.81490623927705	8.69102074450378	8.80565835660848	8.77404799735672	8.67582440541183	0.0823798396345603	0.598193413312615	0.825746818830553
Merged-chr2-13396252-3	chr2	13396169	13396369	+	847.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 28 of 66)	intron (NM_001081084, intron 28 of 66)	95607.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	3.6612745882317	3.93586149522299	3.66180021016613	3.53140377782004	3.74687227297069	3.61475912391626	3.30233229723626	3.31134183659721	-0.592029395763142	0.263055175123299	0.574849696368087
Merged-chr19-46690076-4	chr19	46689968	46690168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025563, exon 1 of 5)	exon (NM_025563, exon 1 of 5)	162.0	NM_025563	66439.0	Mm.87163	NM_025563	ENSMUSG00000062376	Borcs7	2010012O05Rik|4930569L17Rik|AI413851|AI467257	BLOC-1 related complex subunit 7	protein-coding	5.25072485424331	5.53305913732708	5.78874576118656	5.3341622040056	5.22773075871395	5.06759169756304	5.0924826430701	5.45350245413161	-0.473971399303474	0.12462351137543	0.391951700865256
Merged-chr10-51530535-3	chr10	51530421	51530621	+	940.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS4-int|LTR|ERV1	39623.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	3.37041874659422	3.47011321785207	3.49286482109642	3.36125570082725	3.92116793865107	3.72276436714172	3.47972571347249	3.88852910684406	1.10376140484392	0.0228946951137884	0.139917704430698
Merged-chr10-94470886-2	chr10	94470786	94470986	+	853.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	MTC|LTR|ERVL-MaLR	-43971.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	3.01632623278133	2.75420256435025	2.85449930667186	2.58131995664888	2.78188076277512	2.77111337440716	2.65810995798041	2.59631008874697	-0.472453501403734	0.478594840002026	0.754588594894323
Merged-chr6-52640334-4	chr6	52640179	52640379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145567)	promoter-TSS (NM_145567)	21.0	NM_145567	58875.0	Mm.286458	NM_145567	ENSMUSG00000029776	Hibadh	6430402H10Rik|AI265272	3-hydroxyisobutyrate dehydrogenase	protein-coding	8.12185599467452	7.99164961305054	7.9045181017065	7.94032073318712	7.69676388264691	8.11064560578804	7.97034164890889	7.83228072987185	-0.109703503933495	0.527409363058854	0.784361896301674
Merged-chr11-77497736-4	chr11	77497653	77497853	+	877.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004144, intron 1 of 19)	intron (NM_001004144, intron 1 of 19)	4341.0	NM_001004144	216963.0	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	4.2085125419137	4.0301519199165	3.65592786602803	4.01213485727364	4.23755345787162	4.00676167233731	3.70350560432216	4.12215135231138	0.124319586078213	0.787421490713558	0.917554094157232
Merged-chr17-69076472-4	chr17	69076410	69076610	+	865.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355732, intron 1 of 21)	CpG	833.0	NM_001355732	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	3.56049600356	3.47603286425661	3.50723870076752	3.51802773236812	3.72340937483472	3.44357637352656	3.54679120453387	3.44937360537806	0.128608566596018	0.792779784359011	0.919702592588989
Merged-chr10-51451743-4	chr10	51451647	51451847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28865.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	5.71505611769144	5.35257010309162	5.80983494735366	5.80315572653417	5.67711704125954	5.93704711175186	5.38837911443117	5.41147841987639	-0.108252702287395	0.710192249448889	0.884017407313562
Merged-chr3-55353535-6	chr3	55353425	55353625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	-108203.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	5.54881826248459	5.61951725538524	5.91960651652973	5.80616110271355	5.60644435685482	5.83473886217409	5.73113764698368	5.8719378417864	0.0349155050302233	0.893926708923163	0.960450328240811
Merged-chr1-153918696-4	chr1	153918597	153918797	+	981.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18768.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	4.74969143387325	4.68014222217897	4.67001750625691	4.77096132193666	4.95612068796442	4.99889142969233	4.87406739378046	4.99438515875343	0.472604304872426	0.139391684091922	0.415146612711589
Merged-chr15-6579857-4	chr15	6579762	6579962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278269)	promoter-TSS (NM_001278269)	15.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	6.29318521008268	6.76128364873486	6.15645668512774	6.43584786697168	6.44345917999402	5.92390467097295	6.20512266951265	6.23259285705065	-0.317054457721654	0.214126386887162	0.519788161034397
Merged-chr5-140765011-4	chr5	140764914	140765114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 2 of 3)	PB1D10|SINE|Alu	40887.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	6.92493195136492	6.81288640541352	6.82044449733879	7.24426759699248	6.46660479042574	6.59631056202792	6.77197133783642	6.68502743553951	-0.493625022035383	0.0243194387905795	0.145743526681678
Merged-chr10-53374369-4	chr10	53374271	53374471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204983, intron 1 of 12)	L2a|LINE|L2	5480.0	NM_001204983	100038725.0	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	Gm9766	centrosomal protein 85-like	protein-coding	5.15238421744259	4.7947517142729	5.15326018174833	5.65122334653317	5.02839231370366	4.96493142885263	5.38549287998111	4.97875520911802	-0.269876168295815	0.450532010191949	0.735357832948579
Merged-chr12-71831003-4	chr12	71830914	71831114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172464)	promoter-TSS (NM_172464)	-54.0	NM_026102	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	8.99562537149941	9.21184967734245	9.09088747266613	9.20391102905135	9.13223651112306	9.25884624788617	9.36531142938439	8.87812551731706	0.0492694053201657	0.761074860773174	0.90650179911268
Merged-chr18-60211379-3	chr18	60211263	60211463	+	684.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033767)	promoter-TSS (NM_001033767)	-714.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	2.93362478941995	2.59759261473519	2.65805568020052	2.7875267771955	3.12614259164092	3.16527888883371	2.92333406788176	3.21128783722937	1.54033025749494	0.0140260534755134	0.100136455399556
Merged-chr1-149958081-4	chr1	149958063	149958263	+	977.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	3127.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	3.90284463369216	3.65785448445864	4.28425423446486	3.99225666303086	4.18155391642271	4.13431021201349	4.22287473245555	4.50660601916024	0.744463674233539	0.0886569894303456	0.325016267545456
Merged-chr1-132332992-4	chr1	132332889	132333089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028778, exon 7 of 7)	3' UTR (NM_028778, exon 7 of 7)	16864.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	5.66543832906135	5.5737817850944	5.78502130468152	5.16130209834872	5.49273709077561	5.68304457720444	5.50764612913383	5.75807336743155	0.110798258218812	0.708062500224886	0.882710273980338
Merged-chr15-90322876-4	chr15	90322745	90322945	+	873.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30865.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	4.47678379230738	4.11027790263106	3.94484320884271	4.2899368816747	3.87616769254473	3.78206023940434	4.07114194452022	3.52878984873811	-1.06212203287763	0.0246075493123524	0.14683047636046
Merged-chr4-149790843-4	chr4	149790759	149790959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-16592.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	5.940177488828	5.92609533989619	6.4050774432629	6.12092682652716	5.73278568092822	5.72982047549877	5.86544820726821	5.95923287533838	-0.458740613156402	0.0729858823431916	0.290730433673179
Merged-chr1-144316719-3	chr1	144316598	144316798	+	829.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67594.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	4.04579130116104	3.35588661891605	3.58624428075077	3.87593842078704	3.88979879322812	3.38891416157752	3.33273228983495	3.63852884088629	-0.469944123265029	0.401574578022572	0.699140908156458
Merged-chr10-88578804-4	chr10	88578718	88578918	+	969.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252372, intron 2 of 28)	intron (NM_001252372, intron 2 of 28)	26334.0	NM_001252372	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	5.0369310116273	5.03161036818579	4.74424438449996	5.09662502031365	5.052222343077	4.96048388695261	4.980377648084	4.89614083208725	-0.0350644333701765	0.912006748661382	0.96710160841083
Merged-chr3-103206595-4	chr3	103206486	103206686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34931.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	7.99040878997883	8.63558394305459	8.54513325908275	8.19635443602887	8.39940331652555	8.52124051449892	8.46798443844806	8.3703961323994	0.0932101371066936	0.62078591096844	0.837500887125037
Merged-chr11-8443822-4	chr11	8443719	8443919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 27 of 30)	intron (NM_001083587, intron 27 of 30)	220716.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.24938871499972	5.99871365361705	6.18106095789503	6.24724608692538	5.5060673534636	5.53810092156591	5.62999836721772	6.10335803333403	-0.431441146468094	0.189001513377705	0.48779670955222
Merged-chr9-108566954-4	chr9	108566854	108567054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023247, exon 1 of 5)	5' UTR (NM_023247, exon 1 of 5)	388.0	NM_023247	66706.0	Mm.29471	NM_023247	ENSMUSG00000070283	Ndufaf3	4733401H18Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	protein-coding	5.85381455735904	5.82556500919953	5.64482732616468	5.6379832805334	6.18537062792939	6.16772695682856	6.19720423223739	6.31149734909145	0.757799502916587	0.00132353371838392	0.0168952307282728
Merged-chr4-114947564-4	chr4	114947485	114947685	+	993.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21572.0	NM_015758	30923.0	Mm.377122	NM_015758	ENSMUSG00000044518	Foxe3	FREAC8|dyl|rct	forkhead box E3	protein-coding	4.99684561866886	4.87334369512762	5.10291059150983	5.41299001802112	4.98982176509899	5.462424247634	5.29253043908711	5.22734268499768	0.208295190250874	0.528536356709601	0.785121967865949
Merged-chr7-141455405-1	chr7	141455305	141455505	+	1000.0	f0_c57.idr	exon (NM_001163689, exon 1 of 9)	exon (NM_001163689, exon 1 of 9)	217.0	NM_001163689	66853.0	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	6.11298104376062	6.21808545171292	5.52364945174558	5.65066948566687	6.1225629547627	6.09904799060674	6.0226189935803	6.02851572339476	0.266133816166264	0.33099038376477	0.64217746138939
Merged-chr16-3892988-4	chr16	3892906	3893106	+	732.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290689, intron 1 of 5)	intron (NM_001290689, intron 1 of 5)	8387.0	NM_001290689	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	4.22491049546146	3.58108458137995	3.92252512119878	3.82743157672372	4.03370227160317	3.94163224820498	3.85656701459081	3.81859268211705	0.0484650803815866	0.916627322087792	0.969113574476552
Merged-chr10-117953112-4	chr10	117953008	117953208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27649.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	6.57907050349487	6.49645259387081	6.36244215404793	6.49001823799083	6.41815296158447	6.50175361741958	6.2549675836242	6.49623575460127	-0.0954070382744443	0.654790383692484	0.855720388544032
Merged-chr10-7992797-4	chr10	7992687	7992887	+	939.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36664.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	5.36277511754455	5.96993768409526	4.98211123203884	5.23090270140741	5.27521269833356	4.87798664637456	4.84297821035645	4.59553550910953	-0.944231488228124	0.0149917341990421	0.104775587376656
Merged-chr7-141010657-3	chr7	141010558	141010758	+	908.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025378)	promoter-TSS (NM_025378)	86.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	3.28291823021095	3.29254820147451	3.22943990750663	3.27642933725973	3.17525888902668	3.02626498088086	2.97862773793581	2.98637590179605	-0.881762783702608	0.122635247623053	0.388118578824182
Merged-chr7-25395289-4	chr7	25395190	25395390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073027, exon 2 of 6)	non-coding (NR_073027, exon 2 of 6)	577.0	NR_015569	654804.0	Mm.389841	NM_001039540	ENSMUSG00000053714	4732471J01Rik	-	RIKEN cDNA 4732471J01 gene	ncRNA	5.95291586073696	6.03616066731446	5.95396322888687	5.99830880676252	6.21448145686333	5.80225065851174	5.98869429751344	5.99369113710234	0.0521080198725508	0.829733041652887	0.934618333601978
Merged-chr4-136148059-1	chr4	136147959	136148159	+	1000.0	f0_balb.idr	Intergenic	CpG	4237.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	7.39678256588273	7.23791673770037	7.43576303068379	7.53140661265455	7.25854237955542	7.17266508903163	6.87819264546282	7.09141473170921	-0.40184563005036	0.03705006117533	0.191893058604294
Merged-chr6-51525313-4	chr6	51525211	51525411	+	981.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361581, intron 1 of 6)	intron (NM_001361581, intron 1 of 6)	1051.0	NM_001361580	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	5.55840127126956	5.36308799088177	5.32196512341905	5.60514371403504	5.01702997727394	5.1701192859403	4.8917702137647	4.95083431715915	-0.865574047291192	0.00398260184056684	0.0399320490787023
Merged-chr11-49202808-4	chr11	49202689	49202889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009562)	promoter-TSS (NM_009562)	-711.0	NM_001024846	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	5.77642363872181	5.88701266575157	5.70378709607829	5.38377197406947	5.9129914464939	5.97502691105012	5.59722594179008	5.56673265808006	0.154184828852867	0.585672701914536	0.818337494389066
Merged-chr11-48859223-4	chr11	48859103	48859303	+	745.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12217.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	3.27225691703195	3.54873086339711	3.13932750922945	3.47505681736504	3.67263951158881	3.38524018517066	3.32285929666403	3.78650319086322	0.604735156452876	0.267156133202136	0.578853197929891
Merged-chr8-46470859-4	chr8	46470757	46470957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007981)	promoter-TSS (NM_007981)	-180.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	8.93052823537659	8.91242057234748	8.96828754857748	8.7559199491716	8.83892746374556	9.10258970045483	9.19765228057327	8.68699966571776	0.099006399019867	0.558574185284771	0.803265195951014
Merged-chr2-129570919-4	chr2	129570799	129570999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21940.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	6.69596911892429	7.08307972942484	6.40766889875326	6.32084878086266	6.41797563866436	6.79922561724661	6.60434552335516	5.92705913990078	-0.26952642122483	0.346748165389722	0.654927235470945
Merged-chr7-30198843-4	chr7	30198711	30198911	+	823.354187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3658.0	NM_009795	12336.0	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|Cdps|Css1|D7Ertd146e	calpain, small subunit 1	protein-coding	3.69746161831106	4.20969449496457	4.29218973653292	3.89298502115377	4.08463687363373	4.05003461394965	4.14856668004967	4.12023100022957	0.165423972230299	0.705665138752895	0.881790297238375
Merged-chr1-178350983-4	chr1	178350895	178351095	+	960.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13180.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	3.95840038500925	4.03577673146786	3.90320854793773	4.54651601914496	4.48339734982658	4.02595317042131	4.5367437564568	4.06148613792169	0.350894382754064	0.456828188133645	0.740140067902596
Merged-chr17-35915755-4	chr17	35915653	35915853	+	837.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361455, intron 1 of 5)	intron (NM_001361455, intron 1 of 5)	687.0	NM_001361455	66973.0	Mm.29484	NM_025878	ENSMUSG00000024436	Mrps18b	2400002C15Rik|MRP-S18-2|S18mt-b	mitochondrial ribosomal protein S18B	protein-coding	3.73531760036667	3.95751454369178	4.04445351943565	3.46994700209817	4.22626081050593	4.07301510039441	3.98033595854153	4.04192961724515	0.778378874886011	0.0903274318821389	0.32824915882671
Merged-chr2-83722061-4	chr2	83721953	83722153	+	893.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2344.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	4.5144239183377	4.47385187847627	5.12423100797095	5.09865562275871	4.70550364769608	4.35443655752998	4.25995145002464	4.55492513976746	-0.770936970300879	0.0591194358058647	0.256214218291868
Merged-chr18-31939323-1	chr18	31939223	31939423	+	755.5	f0_balb.idr	intron (NM_144862, intron 1 of 9)	CpG	7816.0	NM_144862	225341.0	Mm.24551	NM_144862	ENSMUSG00000024395	Lims2	PINCH2	LIM and senescent cell antigen like domains 2	protein-coding	3.37079896245939	3.52837103102028	3.72667558890085	3.69881654431954	3.03505854911817	3.3621323856776	3.10501327678004	3.53376223823435	-1.15019416320318	0.04275954553683	0.210206622816909
Merged-chr2-79228190-4	chr2	79228100	79228300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27226.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	7.13280556678843	7.05176980906291	7.21962708138302	7.22915493074855	6.60742090717292	6.65959622273366	6.84183274446209	6.71264722443972	-0.641441687164145	0.000911975336682515	0.0125146505667485
Merged-chr12-78792635-4	chr12	78792538	78792738	+	757.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019579, intron 1 of 14)	MTD|LTR|ERVL-MaLR	43691.0	NM_019579	56217.0	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	3.81121488520162	3.87255390287865	3.59212315064956	3.92360231894297	3.75709369417777	3.93133959794637	3.69222690609385	3.90661335471731	0.0184666004389276	0.967717997508845	0.98857340124644
Merged-chr5-142394814-4	chr5	142394718	142394918	+	904.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	-6679.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	4.28643651274056	5.01054952885621	4.67739483667969	4.16206697685314	4.4721662415119	4.95535778480903	4.49727751264076	4.47220898442309	0.0841244078080611	0.84328087884409	0.940459539910433
Merged-chr5-9056245-4	chr5	9056160	9056360	+	769.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44477.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	3.82507659492454	3.63323026441984	4.2343989857489	3.56776526148301	4.01759994129522	3.89258191144176	3.91152610844993	4.19220794232287	0.500886532126657	0.290860574189339	0.603119162906712
Merged-chr4-75400952-4	chr4	75400854	75401054	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44A|LTR|ERVK	-122662.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	5.90203038875423	5.79573761268033	5.85877209185516	5.56343122765648	6.14591540295075	5.67348828823107	5.66135250504813	5.43042130182376	-0.00485785495658067	0.986689282937117	0.995137687953634
Merged-chr11-114680961-4	chr11	114680894	114681094	+	866.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	5526.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	4.27671544031311	4.09898631839116	4.09738618975723	4.29663858018059	4.09857892809104	4.22162390128104	3.98089541860178	4.27467398887716	-0.144719247688574	0.720633314562956	0.888354390739079
Merged-chr4-134511013-4	chr4	134510916	134511116	+	978.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081099)	promoter-TSS (NM_001081099)	17.0	NM_001081099	69885.0	Mm.141592	NM_001081099	ENSMUSG00000078521	Aunip	2610002D18Rik|Clhc1	aurora kinase A and ninein interacting protein	protein-coding	5.59045483934064	5.25215922531718	4.83223564783195	5.17694838316314	5.85709874829453	5.68646057375374	5.75497665074314	6.02377219455679	1.02680055748743	0.000522397105616154	0.00799649539368865
Merged-chr5-140704902-4	chr5	140704807	140705007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276287)	promoter-TSS (NM_001276287)	-104.0	NM_181066	231841.0	Mm.271932	NM_172724	ENSMUSG00000000148	Brat1	AA881470|Baat1	BRCA1-associated ATM activator 1	protein-coding	8.93875036456779	9.15012211790728	8.80420177816451	8.62242264728506	8.99360029435316	9.11821471766136	9.05864564028205	8.88961205784744	0.158150269618027	0.348995610170239	0.656669712028006
Merged-chr3-59210931-4	chr3	59210810	59211010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028808)	promoter-TSS (NM_028808)	-28.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	5.80798324890333	6.33844998193311	6.07939416511587	6.11556926720714	5.87006036864269	6.17062793621688	5.92103947158911	5.5866073406836	-0.32096987820011	0.226685023246784	0.535306657477368
Merged-chr15-36967337-4	chr15	36967186	36967386	+	639.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40116.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	3.7646741433149	3.83944822707685	3.5962570490236	3.97860184058624	3.58473243635792	3.93722670055441	3.80120670795516	4.04577950781361	0.0942175745949643	0.842447461777596	0.940205423428672
Merged-chr5-36726583-4	chr5	36726468	36726668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22111.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	7.19519997238007	7.17940123477003	7.18538288670651	7.10105924596716	7.1658104258978	7.17071201074227	7.04559601023322	7.1691959657167	-0.0293316278354295	0.870053605497907	0.951196424128519
Merged-chr10-57743835-4	chr10	57743729	57743929	+	945.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41094.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	4.62913174429198	4.95296186300283	4.55131781055457	4.64911220936234	4.60664887196839	4.35931509354153	4.48958917062692	4.1760400120592	-0.619169580583626	0.104077058202785	0.354556376271467
Merged-chr10-127731587-3	chr10	127731466	127731666	+	762.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001199971, exon 8 of 8)	3' UTR (NM_001199971, exon 8 of 8)	6174.0	NM_009312	21334.0	Mm.2374	NM_009312	ENSMUSG00000025400	Tac2	PPT-B|Tac3	tachykinin 2	protein-coding	3.77299648796662	3.71048170104711	3.44539754734291	3.8672686695359	3.56482188420479	3.67887516586191	3.93397583437728	3.50389782255288	-0.118115229500126	0.81168823206268	0.927200527094129
Merged-chr4-95106163-4	chr4	95106065	95106265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53943.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	7.78972368470702	7.67711592340172	8.01439331436437	8.31790204880367	7.79385485156846	7.81801843356038	7.90144291120742	7.99577107966847	-0.137533410171506	0.488888361517256	0.761506984800682
Merged-chr11-120630641-4	chr11	120630540	120630740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010756, intron 1 of 2)	intron (NM_010756, intron 1 of 2)	2907.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	7.10113199298677	7.44163071850968	6.86710875866523	6.68752246721495	6.9516380718328	6.77268703404206	6.87226946461231	6.50232584229788	-0.363066487696052	0.138285623947419	0.413677079387802
Merged-chr11-115143784-3	chr11	115143659	115143859	+	652.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	B1_Mur4|SINE|Alu	-9767.0	NM_145634	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	2.89711160703778	2.96528595118278	3.07794862348001	2.72767940265606	2.97011199162128	3.0059386104706	3.0090702995577	3.01893154491283	0.37930549442899	0.522477384428971	0.781971587334536
Merged-chr4-120909936-4	chr4	120909808	120910008	+	811.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15097.0	NM_028457	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	3.64751104164914	3.46371919243014	3.48573502542146	3.55289910224142	3.55192412528454	3.54124577857824	3.58175816945081	3.78969023911269	0.25279250458153	0.59803585652969	0.825700950899405
Merged-chr14-75069662-6	chr14	75069558	75069758	+	890.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	53631.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	3.88058850821137	3.80705030362145	3.7832513091258	3.74858611921938	3.5538962350409	3.55143038819446	3.81686385166665	4.01255254563632	-0.171969215445857	0.715054894490303	0.886010584897636
Merged-chr2-163713399-4	chr2	163713287	163713487	+	975.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	19350.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	5.27468593288352	5.31634570181761	5.76051255312653	5.7064405264997	5.43245531419811	5.01764574229221	4.9361851470599	5.17502728171117	-0.666905961588687	0.0386628526447036	0.197334107699754
Merged-chr11-88204342-4	chr11	88204242	88204442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_111902)	promoter-TSS (NR_111902)	-46.0	NM_024174	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	6.77717881035328	7.00771446467215	6.3737161633462	6.3709469822265	7.20307323285588	7.1419448021058	6.95490335342658	6.87064618325902	0.559109483012297	0.018005943396819	0.119211705426675
Merged-chr1-138244116-4	chr1	138244030	138244230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-29608.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	7.54108927921957	7.64067759253253	7.47876432018807	7.2285368692731	7.46983876916998	7.52852372149226	7.49634622279083	7.20435676643611	-0.0539142197512101	0.779324147400657	0.913908652615967
Merged-chr8-11462301-4	chr8	11462276	11462476	+	863.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-15553.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	3.54009728383569	3.84022191244128	3.89046554807803	3.67077937971562	3.62988209906046	3.53469803974563	3.52741376634228	3.59484894709332	-0.516552806610343	0.283570928706901	0.595670507139694
Merged-chr18-69595930-4	chr18	69595823	69596023	+	990.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	249763.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	5.15731782532702	5.20192005123872	5.19133562546866	5.53261736115705	5.83824073748767	4.99654808564029	5.16590825346337	5.18778125414846	0.120495714399078	0.728380931429516	0.89196275508999
Merged-chr6-67267569-3	chr6	67267460	67267660	+	991.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113565, intron 1 of 7)	CpG	581.0	NM_025814	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	4.72254020022269	4.55392401433624	5.38028996396917	4.82108509040675	4.54601375567034	4.6365286859222	4.74091954222258	5.51422942659927	0.0329793643209966	0.938241061895166	0.977561047845834
Merged-chr10-68193056-3	chr10	68192878	68193078	+	981.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	85748.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	4.29203114383601	3.9281714067512	3.7234771364401	4.22387430751704	3.23423837568901	3.28691236230111	3.43460105850205	3.31829946747505	-2.83569965872479	1.54231523200777e-06	5.19302061963486e-05
Merged-chr14-70815858-4	chr14	70815753	70815953	+	787.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37080.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	4.2846280579025	4.10842775061946	4.2852919402855	4.53658942964421	4.04081898256375	3.94183972854216	4.46456625614098	4.32530360641261	-0.287570813153305	0.497734395934334	0.767160446248674
Merged-chr4-133814191-4	chr4	133814084	133814284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	60547.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	6.31040890810106	6.85092200239715	6.31152700607109	5.97985677836163	6.55355652654157	6.82643813110655	6.61669945970007	6.74585941800881	0.425008581965788	0.102855230892052	0.35216269069915
Merged-chr1-65176369-3	chr1	65176225	65176425	+	884.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111320, intron 1 of 8)	RMER15|LTR|ERVL	2817.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	2.24485472322546	2.16322965446071	2.245164399272	2.03922732952189	1.9996101452182	2.14395130670035	1.96464131321543	1.96851777719234	-1.09123502422729	0.188515468686196	0.487107218412704
Merged-chr16-59559742-4	chr16	59559624	59559824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3972.0	NM_174848	224273.0	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	4.71862631192315	4.57438568288374	4.29552117731946	4.40269387909531	4.45672720008323	4.73937515995096	4.9540491238151	4.4791827101301	0.365012433855255	0.332570136481895	0.643531688755946
Merged-chr13-99029054-4	chr13	99028954	99029154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44489.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	5.35042196861901	5.28824575247909	5.52107847737709	5.80256539759777	5.1638534708225	5.18711232742803	5.43955947222367	5.64287275378933	-0.27236123535639	0.38137604608698	0.683605277875225
Merged-chr14-30591666-6	chr14	30591629	30591829	+	897.8110960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18581.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	3.44865180939983	3.42862487446573	3.66024193886179	3.56761084957123	3.59900458929849	3.50368131839209	3.49175025678863	3.50334324119589	-0.00902147983838971	0.985244838929071	0.994635176509174
Merged-chr7-19667640-4	chr7	19667536	19667736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2606.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	6.25751029205607	5.94467346537441	5.76766039394994	6.26214305523608	5.93244601344184	5.9450460104221	5.97425423686586	6.00061296119116	-0.197095633171068	0.435361354711368	0.724540235375274
Merged-chr4-99191866-4	chr4	99191809	99192009	+	891.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2025.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	3.60694806735668	3.95315425998606	4.1718884837783	3.69897332547261	3.9361308489741	4.45747446499536	3.65619636301503	3.99111737823078	0.453807164636887	0.357347014145962	0.663494847536382
Merged-chr8-47553859-4	chr8	47553766	47553966	+	849.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	20221.0	NM_203507	192174.0	Mm.273081	NM_203507	ENSMUSG00000031568	Rwdd4a	BC016198|Gm1942|Rwdd4	RWD domain containing 4A	protein-coding	4.24990428046097	4.4391298583091	4.25054229257687	4.77305284213998	4.1163635098161	4.06021728682728	4.27732277105585	4.53787235147091	-0.490993401687358	0.245694518232839	0.556825550358437
Merged-chr12-98266353-4	chr12	98266245	98266445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2290.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	7.10779323391586	7.13318862423868	7.12052770351904	7.05364464209626	7.13270315824594	7.13892298538829	6.90077744355654	6.74567066112203	-0.147020377271838	0.453399344548243	0.737488847020096
Merged-chr5-137820909-4	chr5	137820784	137820984	+	799.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360023, intron 16 of 16)	Lx8b|LINE|L1	15394.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	3.690379638756	3.76963107884684	3.97988949434567	3.44673275339808	3.89570804597347	4.14713572241448	3.44331587974274	3.31903368237349	0.0408625000177651	0.940894264365124	0.978676631829834
Merged-chr4-58546829-1	chr4	58546729	58546929	+	625.0	f0_c57.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	6464.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	3.00102969460387	2.84796801954604	3.00136744617061	2.69500829047886	3.48024036830079	3.37453577753436	3.67847784557001	3.41915156296503	2.49232460167733	1.35113814598025e-05	0.000361415490765607
Merged-chr4-123343392-1	chr4	123343292	123343492	+	673.5	f0_balb.idr	promoter-TSS (NM_001256019)	promoter-TSS (NM_001256019)	-140.0	NM_007558	12163.0	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	3.15027658807802	3.36977340480164	3.26646156407602	3.14660104236522	3.20952104960779	3.26105970875429	3.07849444904731	3.14911202269787	-0.21451415183925	0.694924756320709	0.876183250613805
Merged-chr8-25083321-4	chr8	25083225	25083425	+	871.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 2 of 11)	intron (NM_031257, intron 2 of 11)	18486.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	4.23831738840209	3.76269670875043	4.10593387830589	4.19635103419922	4.15676222887454	4.13214077667131	4.26065721414646	4.00654151679202	0.127960343359043	0.762920951167969	0.907015239695587
Merged-chr13-58540256-2	chr13	58540156	58540356	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70621.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	3.32592292098049	3.31949866730602	3.32632882381331	3.72339111874668	3.43134537993919	3.31095361041528	3.25351000633487	3.81930427972228	0.0817338378430552	0.884410465919115	0.956563630962721
Merged-chr14-33400184-4	chr14	33400081	33400281	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310452, intron 4 of 10)	MLT1C|LTR|ERVL-MaLR	10843.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	5.03335755680609	5.58290668767047	5.80183303618895	6.12456850796091	5.04788213256168	4.71760543339892	5.28643438003449	5.6863715431199	-0.819626151311415	0.0343447197783763	0.183158972735824
Merged-chr4-126405264-4	chr4	126405156	126405356	+	827.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153402, intron 3 of 18)	intron (NM_153402, intron 3 of 18)	24286.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	4.25738598393003	4.37160395287983	4.35436743281038	4.80231480120883	4.52769584069179	4.85006997227791	4.28856229302041	4.64127300814217	0.227710456297837	0.574592475084354	0.81246206040379
Merged-chr2-163719424-4	chr2	163719324	163719524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	25387.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	6.0435418576242	6.14682297895377	6.20874918271091	6.45408201095463	6.19836923916368	6.17659218557329	6.05663282697784	6.10432978493428	-0.157426735934912	0.508256993639304	0.773396125844835
Merged-chr4-35100536-3	chr4	35100404	35100604	+	922.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-51551.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	3.79842910840095	3.96306901580922	4.40479811509723	4.01279425202365	3.89439557298249	3.80344633259699	3.54542262544873	4.17714379731311	-0.506517796935438	0.296005375615308	0.607853870026531
Merged-chr8-14884520-4	chr8	14884417	14884617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4019.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	5.93701891298596	6.04480022423872	5.96323610112424	6.14792820683775	6.58368663270395	6.81911302200313	6.63798590139687	7.14674109024373	1.13699305650972	2.0855332718471e-06	6.79076728073215e-05
Merged-chr11-59624450-3	chr11	59624353	59624553	+	925.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	11487.0	NM_001011740	257886.0	Mm.457883	NM_001011740	ENSMUSG00000044061	Olfr225	MOR256-51	olfactory receptor 225	protein-coding	4.06069823580687	4.20692809277566	4.10889882683834	4.13412810818842	3.90936355591141	4.27995203914367	4.04408955182191	4.15224236134239	-0.093309145253304	0.820522294908557	0.931234622067666
Merged-chr5-24077494-4	chr5	24077405	24077605	+	797.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23085.0	NM_026448	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	4.0556402415298	3.89168282508099	3.80754596737451	3.88552187119323	4.09167059051959	3.75033702018998	4.24382887523156	3.96011461332473	0.321140832518995	0.462527979382586	0.744062113791058
Merged-chr12-3236459-3	chr12	3236352	3236552	+	850.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015551, intron 1 of 6)	intron (NR_015551, intron 1 of 6)	661.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	3.51842072753203	3.85831025542993	3.33182710171843	3.32721476510006	4.0045293286574	3.51260857267046	3.76492041050462	3.68064434175396	0.728535764527526	0.160114258657495	0.448021574690693
Merged-chr4-97778482-6	chr4	97778403	97778603	+	954.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 1 of 10)	CpG	877.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	4.34286853481059	4.12484252826565	4.46735958294235	4.45223558173691	4.26694336618656	4.47169059913778	4.23534650151573	4.38338483823047	-0.0495850272695921	0.897763849287282	0.961796960676705
Merged-chr3-84259421-2	chr3	84259321	84259521	+	585.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001271727, exon 1 of 12)	5' UTR (NM_001271727, exon 1 of 12)	358.0	NM_001271727	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	3.6300630123832	3.73456091266612	3.84115072770062	3.74598506169462	3.8894702822956	3.74753853765873	3.82494805877212	3.83888474605373	0.262190314212874	0.555488215313146	0.801562892315961
Merged-chr15-82906192-4	chr15	82906094	82906294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045068)	TTS (NR_045068)	5940.0	NM_013836	21411.0	Mm.252156	NM_013836	ENSMUSG00000041852	Tcf20	2810438H08Rik|SPBP|mKIAA0292	transcription factor 20	protein-coding	6.93216661637037	6.94083643776559	6.89549855147144	7.02864868168923	6.67578604361455	6.10396944080107	6.75390746358373	6.52065087054874	-0.579937212972563	0.00933178505842595	0.0751303165562381
Merged-chr11-114684751-4	chr11	114684651	114684851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	9283.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	7.21572560897391	7.24426547841765	7.29477220419236	7.70784446064439	7.50315325786598	7.26217693397119	7.38104927247461	7.86610898076045	0.172991354726222	0.433203272741574	0.722830392839943
Merged-chr15-79446408-4	chr15	79446290	79446490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4247.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	5.82216377224742	5.54920981681916	5.67473545333547	5.70304458686129	5.76417067755162	5.95020003940316	5.88306022486686	5.88713414604199	0.290569865667772	0.245294723859696	0.556346848599856
Merged-chr3-60541260-4	chr3	60541151	60541351	+	925.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	40072.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.41732709898563	4.54037933192076	3.94581871668566	4.09393260998184	4.28891233902243	4.32992837319359	4.23045140208061	4.24661583035371	0.0224044565535185	0.956750912476209	0.984724224578049
Merged-chr10-4612082-3	chr10	4611997	4612197	+	955.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126357, exon 1 of 8)	non-coding (NR_126357, exon 1 of 8)	108.0	NM_007956	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	3.76951280040655	3.61703924067162	3.6770673989541	3.42974078833123	3.53320114939751	3.39318688453028	3.56139085635767	3.40525202241652	-0.465457784882476	0.354939070734014	0.661579026385505
Merged-chr9-110654157-4	chr9	110654064	110654264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183276)	promoter-TSS (NM_183276)	-3.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	8.82386933629063	9.14764387690904	8.89926397994755	8.8636803414074	8.80670309784576	9.01120364739919	9.12985083219187	8.60096918213606	-0.047480339180851	0.785610598480247	0.916584329747337
Merged-chr4-132824164-4	chr4	132824069	132824269	+	940.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18965.0	NM_001355198	100336.0	Mm.105230	NM_146154	ENSMUSG00000028882	Ppp1r8	6330548N22Rik|AU044684|NIPP1	protein phosphatase 1, regulatory (inhibitor) subunit 8	protein-coding	4.48549958083263	4.48079440344364	4.19494738253535	4.41397342403857	4.7157835419259	4.52722058515197	4.77107215016303	5.09301297997013	0.848301847613769	0.0208945786505418	0.131872248072966
Merged-chr11-94340395-2	chr11	94340280	94340480	+	666.166626	f0_balb.idr|f0_c57.idr	TTS (NM_146024)	TTS (NM_146024)	12379.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	3.80756634358228	3.87261951556029	3.3144904005536	3.61766410620925	3.41295823869448	3.55662525248797	3.64838254538886	3.55528411638545	-0.407051106128537	0.424369424594008	0.716123917662497
Merged-chr3-94814523-3	chr3	94814416	94814616	+	928.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23051.0	NM_001165948	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	3.7773322427018	3.76219816329104	3.77786806694593	3.86842635615325	3.64282667992469	3.73357283193997	3.65884584059639	3.87240081434757	-0.228374992188375	0.614827586919123	0.834117577275116
Merged-chr12-13491930-3	chr12	13491844	13492044	+	892.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027706, intron 44 of 51)	intron (NM_027706, intron 44 of 51)	135702.0	NR_136761	102639399.0	Mm.122052	NR_136761	ENSMUSG00000113666	Gm35725	-	predicted gene, 35725	ncRNA	3.83429898635776	3.86628572323338	4.1159926268039	4.10309485752628	3.87752428089451	3.72365633402528	4.01133200322941	3.8326856830483	-0.352215892008136	0.42709804245852	0.718329235229673
Merged-chr17-27028602-4	chr17	27028499	27028699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007523)	promoter-TSS (NM_007523)	28.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	5.78193001057712	5.90824824085889	5.57663832138836	5.65649503218781	5.84701915113484	5.51042059687228	5.95006257692995	5.67996823093817	0.0498544187573301	0.85128360618995	0.943916765912314
Merged-chr6-43266610-4	chr6	43266500	43266700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133674, intron 1 of 14)	intron (NM_133674, intron 1 of 14)	956.0	NM_133674	54324.0	Mm.320978	NM_133674	ENSMUSG00000033542	Arhgef5	2210412D05Rik|AA717842|AW495314|Tim1	Rho guanine nucleotide exchange factor (GEF) 5	protein-coding	5.31889510834791	5.62584360493209	5.52838665575116	5.84647889681869	5.67108978943277	5.39761860913522	5.52769047493472	5.57827044899072	-0.103285692020753	0.717261133199579	0.886969736012834
Merged-chr8-71670723-4	chr8	71670606	71670806	+	901.715942	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 1 of 41)	intron (NM_001029873, intron 1 of 41)	1051.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	3.83236549647691	3.86426709905773	3.66767105442521	4.0915758857384	3.97358622986731	3.84210112163345	4.13357619792173	3.93085292736956	0.23688998585124	0.600528033876799	0.826836656557895
Merged-chr10-77282986-4	chr10	77282893	77283093	+	879.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23693.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	3.81478286390958	4.01432455089937	3.50911488112819	4.15598925722731	4.22189983230406	4.14071836936159	3.95324036581199	3.9676855010401	0.444420627595614	0.350670306569516	0.658186562602986
Merged-chr14-70303093-3	chr14	70302994	70303194	+	644.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001135152)	TTS (NM_001135152)	-13597.0	NM_001304992	19057.0	Mm.439683	NM_008915	ENSMUSG00000022092	Ppp3cc	Calnc|PP2BA gamma	protein phosphatase 3, catalytic subunit, gamma isoform	protein-coding	3.7106092258009	3.89937442924155	3.86087920269445	3.62123210120918	3.9967177720786	3.82990706654663	3.58721436719516	3.414102451079	-0.108747040451374	0.826691530821307	0.933509685869233
Merged-chr18-5941391-4	chr18	5941299	5941499	+	916.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	194699.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	4.05421526185363	4.64596145193307	4.71126218219834	4.42821928185377	4.11436078711761	4.48803000262478	4.38265401438924	4.7080418831311	-0.110536170364028	0.790999042385931	0.918930451102165
Merged-chr11-118981167-4	chr11	118980989	118981189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7092.0	NM_001359574	238011.0	Mm.244114	NM_001030291	ENSMUSG00000046697	Enpp7	Alk-SMase|Gm254	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding	4.4241521349354	4.39496090503958	4.37908394662583	4.36280244365331	4.75095877050941	4.41189571369955	4.7532606478807	4.96242994612978	0.768795065084488	0.0325914786707044	0.176880195676812
Merged-chr3-27268964-4	chr3	27268835	27269035	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-48142.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	4.52179960802068	4.78347054406685	4.52251945151868	4.37390347602801	4.41879918112997	4.38100933942719	4.41883496225376	4.59807119145102	-0.215237148606824	0.563131063310872	0.806111856556282
Merged-chr10-80679751-3	chr10	80679647	80679847	+	869.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3454.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	3.34999083975916	3.2786062256076	3.23468411577561	3.28437540968105	3.37493228627391	3.28350355729961	3.16222933013687	3.55227980117085	0.234713460041289	0.656045856946042	0.856430271691361
Merged-chr9-25158444-1	chr9	25158344	25158544	+	766.0	f0_balb.idr	Intergenic	L2c|LINE|L2	-6663.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	3.82285357434058	3.58322247063322	4.01264737606321	4.02103300461099	3.5227590961336	3.65743084193218	3.95028196197647	4.05322678289342	-0.193819682592495	0.692253073249532	0.874829229117755
Merged-chr1-138237440-4	chr1	138237352	138237552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-36286.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	5.83044473501781	5.79950200185084	6.26859504035571	6.05114619357455	5.86899677561324	5.88314287798297	5.62459340899292	5.53482488375414	-0.420606668381269	0.115831653202992	0.376560001979254
Merged-chr2-140846969-4	chr2	140846878	140847078	+	943.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-175502.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	4.47093827569743	5.32635460824531	5.05256136742238	4.12660336549338	5.29392895344702	4.74691762232669	5.11654610776926	4.36803895644248	0.196309117959325	0.674988803290068	0.866472398589402
Merged-chr6-113677571-4	chr6	113677469	113677669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 7 of 11)	intron (NM_001113553, intron 7 of 11)	-19481.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	7.72490179602072	7.74889573391183	7.55859579974575	7.94441192727881	7.17058823251358	7.47837349938919	7.48510550787619	7.54440002812465	-0.449877158193309	0.017461932020569	0.116783130629717
Merged-chr11-3185962-4	chr11	3185857	3186057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 4 of 32)	B1_Mur4|SINE|Alu	7506.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.11825944764649	6.07619766273669	6.43294231521123	6.12323336087243	6.58752993014558	6.78619640391141	6.56177567782467	6.89977701650058	0.770099295450209	0.000603678638262365	0.00898374279591823
Merged-chr1-43471436-4	chr1	43471337	43471537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	25686.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	6.04717130545659	6.74654158028113	6.13312041217206	5.056592663302	6.57191085908773	6.66416631250792	6.43945145510152	5.36982376525396	0.309084882480413	0.628500521945464	0.841555695467787
Merged-chr18-15214474-4	chr18	15214383	15214583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63037.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	6.93061933336528	6.20669213619846	6.46354613579234	6.77521386221173	6.77570864997104	6.49161202773214	6.99031200209955	6.54455441198082	0.130974210311067	0.603047854811542	0.827910751102299
Merged-chr8-73233628-4	chr8	73233518	73233718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	B4|SINE|B4	119922.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	7.09473197250173	7.24345387050606	7.48344199178783	7.60305769213473	7.50625035385802	7.40504507775887	7.65030462568384	7.45962916408091	0.168189408644884	0.393442086821443	0.692576805225404
Merged-chr2-129058165-3	chr2	129058063	129058263	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7784.0	NM_027192	69737.0	Mm.33909	NM_027192	ENSMUSG00000027394	Ttl	2410003M22Rik|2700049H19Rik|AI848570	tubulin tyrosine ligase	protein-coding	5.26858346208953	5.95163926933695	5.48412478206202	5.22482723235978	3.43778426823844	3.72968134538299	3.80884308795133	3.66965070964642	-5.88326775010949	1.26638360472182e-13	1.61252090519668e-11
Merged-chr13-54685353-3	chr13	54685268	54685468	+	729.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027396, intron 1 of 10)	intron (NR_027396, intron 1 of 10)	2440.0	NM_001146025	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	2.88040929066095	2.91064090321588	2.94555888584612	3.02236272851754	3.04537934613855	3.11589505823757	3.05530529971352	3.17523068297905	0.618724052254972	0.279386559341695	0.591495502480744
Merged-chr9-108808378-4	chr9	108808321	108808521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030729)	promoter-TSS (NM_030729)	41.0	NM_030729	80987.0	Mm.192416	NM_030729	ENSMUSG00000032598	Nckipsd	AF3P21|DIP1|ORF1|SPIN90|WASLBP|WISH|Wasbp	NCK interacting protein with SH3 domain	protein-coding	6.78501414384974	6.52992653628517	6.6434837457424	6.36601368586883	6.58134188874209	6.84813684739496	6.5318308017995	6.47747055746691	0.0563624877496567	0.800879172173719	0.923245260282665
Merged-chr2-117120721-6	chr2	117120597	117120797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033524)	promoter-TSS (NM_033524)	-374.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	6.45217086219785	6.5585844502375	6.45331148536964	6.1829120340023	6.42040364008614	6.69526682233635	6.35047135263873	6.54706765659919	0.145632644622528	0.520534992219242	0.780797003586146
Merged-chr8-40491575-4	chr8	40491476	40491676	+	934.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011135)	TTS (NM_011135)	18903.0	NM_001361938	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	4.29341770830551	5.14359396562745	4.8382103192078	5.05736376983398	4.43143678569282	4.424380536804	4.59356084077039	4.52813062671255	-0.835011397520253	0.0329198311569044	0.178102143877946
Merged-chr2-181678973-4	chr2	181678882	181679082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1315.0	NM_001356343	21400.0	Mm.24245	NM_009326	ENSMUSG00000059540	Tcea2	AI326274|S-II-T1|SII-T1|Tceat	transcription elongation factor A (SII), 2	protein-coding	6.11634673886068	5.96569172258156	6.03762504595061	5.88021159649762	5.82927601283718	5.6251881821771	6.0067509150877	5.99144842686591	-0.191962196011169	0.441562321614805	0.728540471714152
Merged-chr15-34238145-4	chr15	34238039	34238239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_033521, exon 1 of 7)	5' UTR (NM_033521, exon 1 of 7)	113.0	NM_033521	114128.0	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	6.32101224932871	6.44069923529366	6.43331606512413	6.6069886121516	6.77288318397856	6.42018299918549	6.75219106947918	6.68454279258224	0.295703706463364	0.173358886021868	0.467381192003767
Merged-chr10-62506387-4	chr10	62506271	62506471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	1386.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	7.62941846658424	8.07786798577909	7.9405480877031	8.14129026384478	8.02130336260044	7.80836939433953	7.9640094373538	7.99697930345607	-0.0235309870661217	0.897098593104576	0.961535044325176
Merged-chr15-75969146-4	chr15	75969035	75969235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347040)	promoter-TSS (NM_001347040)	12.0	NM_001081065	69020.0	Mm.294295	NM_001081065	ENSMUSG00000034429	Zfp707	1500031N24Rik|AI451708|AW495315	zinc finger protein 707	protein-coding	5.72025212651013	5.94385780023296	5.84386800708923	5.45299496079992	6.14124219362129	5.8974071354679	5.58565473493664	6.05386712395644	0.330951074976998	0.235520633208085	0.545501823020436
Merged-chr2-29619615-4	chr2	29619472	29619672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039087)	promoter-TSS (NM_001039087)	-148.0	NM_054050	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	6.08945737319334	6.40885368082836	5.57308337334508	5.76107802617212	6.49125947778328	6.49835154888193	6.37582042413467	6.26447294424265	0.636604851461244	0.0188084888578255	0.122787346438559
Merged-chr17-73950280-4	chr17	73950183	73950383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011723)	promoter-TSS (NM_011723)	-87.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	7.72600034814559	8.01085814781155	7.81646555892769	7.92364080594356	8.04996281550959	8.16899942623295	8.2691792962287	7.93756211064667	0.299870661852868	0.077551113672759	0.301171812163094
Merged-chr13-30750671-4	chr13	30750587	30750787	+	940.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013674, exon 2 of 9)	exon (NM_013674, exon 2 of 9)	1454.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	4.95926843590554	5.42925366860227	4.85385119202308	4.67066599844423	4.99743047185178	4.8741452759485	4.67527051900672	4.65160436403112	-0.380768929172359	0.304792940422401	0.617330811436874
Merged-chr2-60289733-3	chr2	60289674	60289874	+	986.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5290.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	3.99094755832629	3.4313918584818	3.94986422742769	3.7783140769081	3.84550010881144	3.48293337991432	3.48239234128409	3.43133961184313	-0.673189259846745	0.200939160319542	0.503065263001114
Merged-chr4-141615629-2	chr4	141615492	141615692	+	722.875	f1_balb.idr|f1_c57bl6.idr	TTS (NR_033566)	TTS (NR_033566)	1222.0	NR_033566	100165.0	Mm.439819	NR_033566	ENSMUSG00000073731	AI507597	-	expressed sequence AI507597	ncRNA	2.50550998678653	2.30180588500201	2.50576057453191	2.54496012862759	2.51613054676953	3.1696969336811	2.70428590713925	2.94840434712136	1.8526669766391	0.0121899636171943	0.0909098300892492
Merged-chr6-129237039-4	chr6	129236946	129237146	+	974.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040268, intron 2 of 3)	MTE2a|LTR|ERVL-MaLR	999.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	5.06235017777374	5.01950853460858	4.99866192572328	4.45426775393917	5.29208058692979	4.83771391787593	4.59464815905672	4.92729032900048	0.112551217547047	0.766852015724783	0.908757742622047
Merged-chr11-117116972-4	chr11	117116875	117117075	+	854.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 1 of 16)	intron (NM_001166507, intron 1 of 16)	1803.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	3.9724502015431	3.59199395704364	3.6687596432279	4.04352227459569	3.90095223470326	3.84323227468043	3.95554835779845	3.72270330735513	0.0403515876258984	0.931364461565038	0.975279137937273
Merged-chr9-54501241-2	chr9	54501141	54501341	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172771, intron 1 of 43)	CpG	385.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	4.34798780040359	4.35010379531161	4.21154429016293	4.29795421767359	4.73416275628843	4.06914299235569	4.37135810001236	4.42968990543348	0.316609516178584	0.428781401009928	0.719714930492988
Merged-chr13-48260951-3	chr13	48260854	48261054	+	637.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031166)	promoter-TSS (NM_031166)	-473.0	NM_031166	15904.0	Mm.458006	NM_031166	ENSMUSG00000021379	Id4	Idb4|bHLHb27	inhibitor of DNA binding 4	protein-coding	3.28435987563782	3.16326776532673	3.38497215696077	3.20922200216377	3.11497525836239	2.95627788252138	3.16302041439875	2.98863458944114	-0.79488531401949	0.164632143198925	0.45485234168206
Merged-chr15-97580929-4	chr15	97580818	97581018	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124904.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	5.55456453560957	5.01098669987772	6.1670746093195	5.76936464730521	5.38747114042188	5.20987480793708	5.95736847178141	5.43806122478139	-0.269645627102432	0.455981834043629	0.739398983036626
Merged-chr3-108654757-4	chr3	108654682	108654882	+	859.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177771, intron 2 of 12)	intron (NM_001177771, intron 2 of 12)	842.0	NM_001177770	229725.0	Mm.214545	NM_145543	ENSMUSG00000027884	Clcc1	Mclc	chloride channel CLIC-like 1	protein-coding	3.78922388677944	3.60248514874979	3.4961900936908	4.10597035626268	4.16765999045316	3.90937467653592	3.87452468490838	3.88867368761878	0.503660482165807	0.310857976296735	0.622967506470671
Merged-chr6-92943162-3	chr6	92943068	92943268	+	835.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015530, intron 1 of 2)	CpG	2586.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	3.55218654279822	3.86384292525298	4.23032184416831	4.04980250172781	2.82507328244721	3.13107791112162	3.08438604688101	3.37216820529416	-3.38087912103371	1.92922297553645e-06	6.34859741912664e-05
Merged-chr5-149690043-3	chr5	149689934	149690134	+	963.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081204, intron 1 of 14)	intron (NM_001081204, intron 1 of 14)	11777.0	NM_001081204	381694.0	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	5.54828658829418	5.23458194960485	5.638024673165	5.91106195868533	4.05016496288268	4.54127135516203	4.48732832611676	4.50498440841507	-2.51799201637281	2.63402114859573e-11	2.21878096255498e-09
Merged-chr1-51805305-4	chr1	51805214	51805414	+	849.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010863, intron 7 of 29)	intron (NM_010863, intron 7 of 29)	110664.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	3.74511882828136	3.88637329003534	4.05121472531851	4.18970362526678	3.63245908855996	4.12822977704001	3.94034557527039	4.04870892819923	-0.130922548967082	0.777937956541026	0.91347200185809
Merged-chr6-129534244-4	chr6	129534153	129534353	+	892.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045270)	promoter-TSS (NR_045270)	-969.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	4.14482794173422	4.34084610881358	4.04740567939417	3.86181783483178	4.14668295572632	4.53113886181698	3.92575679040976	4.35931561273929	0.387302548222713	0.372881463767158	0.676584814369541
Merged-chr2-148073322-3	chr2	148073224	148073424	+	775.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26355.0	NM_010446	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	3.27296641503798	3.03264541757573	3.05059265150667	2.65879680991729	3.75948686862077	3.76233829609764	4.06018919763775	4.18667469143361	3.56669948142545	2.3277350250875e-09	1.39701392369901e-07
Merged-chr2-6479175-4	chr2	6479062	6479262	+	955.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126426.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	4.62916331718898	4.68210185606324	4.82840992748028	5.062035890846	4.78751866138583	4.62708041108726	5.18048997490292	4.93089064102358	0.136893300606482	0.701051541017665	0.879499226925928
Merged-chr10-25359803-4	chr10	25359722	25359922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358755)	promoter-TSS (NM_001358755)	24.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	7.71560661676225	7.82790271848874	7.53459835290671	7.30588542075241	8.02715018718737	7.71217528489091	7.81642745548387	7.70354648694892	0.29415485251744	0.133610706112471	0.406961207171022
Merged-chr3-27202945-4	chr3	27202859	27203059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	19955.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	6.78864098851496	6.50970746510589	6.62442850782549	6.97271226333384	6.96922141092086	6.59360420815471	6.91323801086287	6.8798814350555	0.146425559936977	0.506793119815399	0.772520089553395
Merged-chr12-80937893-3	chr12	80937788	80937988	+	760.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	7511.0	NR_045057	100504661.0	Mm.442322	NR_045057	ENSMUSG00000112880	Gm20337	-	predicted gene, 20337	ncRNA	3.34968638453339	2.90744254509141	3.05260619304272	3.38601447191732	3.43044064284837	3.35102395429951	3.16869268216701	3.29407778699511	0.430601926474635	0.45986842247697	0.742271214480192
Merged-chr11-119228495-4	chr11	119228390	119228590	+	991.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172443)	promoter-TSS (NM_172443)	9.0	NM_001347625	207592.0	Mm.205263	NM_172443	ENSMUSG00000039976	Tbc1d16	B930087K01|BC026530|Tcd1d16	TBC1 domain family, member 16	protein-coding	4.79219101720519	4.9624449078361	4.83253365281247	4.73884183903378	5.19267701109822	5.00872152595903	5.33849185998921	5.07642663183313	0.65406378775903	0.0358679079662303	0.188108603205941
Merged-chr3-69238672-3	chr3	69238582	69238782	+	721.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16263.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	3.73768428300331	3.68230638831874	3.88352294487296	3.6049826294691	3.41005551609465	3.9582392356605	3.67095652547708	3.68379741287316	-0.11433110512617	0.814547588584016	0.92840582625946
Merged-chr15-81568806-4	chr15	81568714	81568914	+	927.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17400.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	4.29227187666165	4.58347429583584	4.42914736068991	4.55706039730428	4.47360357788458	4.46824142206924	4.53122701244781	4.54938085252865	0.0551325804928108	0.879173077647736	0.954746715269166
Merged-chr2-156065488-8	chr2	156065395	156065595	+	981.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_139151, exon 1 of 12)	exon (NM_139151, exon 1 of 12)	282.0	NM_139151	245865.0	Mm.330713	NM_139151	ENSMUSG00000038180	Spag4	1700041K21Rik|MNCb-0953|Sun4|mKIAA4118	sperm associated antigen 4	protein-coding	4.56457911679453	4.6917625593362	4.88563559716384	4.60729781220498	4.38898303133444	4.37373603575163	4.41789234067144	4.6782983701188	-0.488184090958881	0.180046680934926	0.476396516942386
Merged-chr5-121122670-3	chr5	121122526	121122726	+	774.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	68771.0	NM_001109992	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	2.55116696784286	2.8091530615195	2.55134799516222	2.77871478295345	3.0437766975843	3.13791398904004	3.06862293092088	3.18436494356438	1.85223546138521	0.00633427637736344	0.0564360318268059
Merged-chr12-3423892-4	chr12	3423790	3423990	+	798.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	RMER17C2|LTR|ERVK	2857.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	4.09538104770292	4.19381894386178	3.81191014897334	3.6374902808987	3.93263760151687	3.87798580756014	3.74310279360411	3.80975739449795	-0.278138798574096	0.554306388804419	0.800708816689258
Merged-chr14-46742912-4	chr14	46742836	46743036	+	961.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-17605.0	NM_001360041	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	5.04903858984147	5.16374696332388	5.36950283338106	5.51176162148841	4.76150283208843	4.44794146450133	4.73140560259042	4.94321575174486	-1.1046097299116	0.00124173132495	0.0160060112239436
Merged-chr3-10297359-4	chr3	10297349	10297549	+	912.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029310, intron 1 of 5)	intron (NM_029310, intron 1 of 5)	3734.0	NM_001357159	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	3.42440054738256	3.35800922127098	3.53480085523553	3.77113493081007	3.37725489397261	3.41677945421981	3.52069141792888	3.53282754019961	-0.284454705972565	0.581662412882634	0.816420227529328
Merged-chr2-137881192-4	chr2	137881103	137881303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-375381.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	6.04579588112393	5.91165437082609	6.39743344102119	6.35946399721717	5.69097039710206	5.88639427734074	6.24717769995137	5.97705749180973	-0.377413944584919	0.158046676356418	0.444930535204605
Merged-chr2-167926253-4	chr2	167926156	167926356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-6071.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	6.79359051235277	6.86217313873436	7.18511385004531	7.01477121755852	6.65014135301059	6.71936159101401	6.82979769686968	7.07135409301899	-0.212286363954585	0.317854093090748	0.629736312302903
Merged-chr15-76229582-4	chr15	76229504	76229704	+	873.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201385)	promoter-TSS (NM_201385)	-107.0	NM_201385	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	4.20348951684505	4.29765854975124	3.94836608466596	4.52121384486156	4.37193264529649	4.37612649101394	4.27463674681799	4.10533351934495	0.0258209083826262	0.95070221294686	0.982348123208556
Merged-chr4-53029199-2	chr4	53029099	53029299	+	972.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17319.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	2.49438692047054	2.67450293860173	2.5678489759325	2.831951327866	2.65136543882682	2.99194895548574	2.75620639013442	2.76480745251898	0.635900163716441	0.349264553979644	0.656818637583855
Merged-chr7-135735879-4	chr7	135735813	135736013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19534.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	6.04009795383061	6.08650294692947	6.32067642993046	5.80269747776525	6.32510269125349	6.54804950097174	6.23363146672979	6.45166353760517	0.508171260337298	0.0361044118859833	0.188871928615569
Merged-chr6-108568063-4	chr6	108567963	108568163	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55104.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	6.0073401781144	5.84228919798153	6.61096576053622	6.6051693075	5.99597767386196	5.47461807502789	5.97759122169919	6.10996069365635	-0.625617513253571	0.0389829791567012	0.198387472838076
Merged-chr7-127511993-4	chr7	127511900	127512100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304266)	promoter-TSS (NM_001304266)	17.0	NM_001304266	100043597.0	Mm.428042	NM_175144	ENSMUSG00000053877	Srcap	B930091H02Rik|D030022P06Rik|F630004O05Rik	Snf2-related CREBBP activator protein	protein-coding	7.44931699236853	7.5512039705113	6.80882002102764	7.17553903159929	7.50197739638454	7.8041091722947	7.63007547024219	7.37725544528635	0.411956344454742	0.0622702043410214	0.264063682435562
Merged-chr1-80635893-4	chr1	80635850	80636050	+	923.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	29402.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	3.71415777635064	3.72874279022421	4.22796006252434	4.08455754501671	3.81521783926746	3.94509039846032	3.80921104175671	3.92365248269616	-0.255311307448173	0.578216876950025	0.81458069221668
Merged-chr6-146578233-3	chr6	146578100	146578300	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138757)	promoter-TSS (NM_138757)	289.0	NM_026218	67529.0	Mm.333499	NM_026218	ENSMUSG00000040242	Fgfr1op2	1500031J01Rik	FGFR1 oncogene partner 2	protein-coding	6.0094651554344	6.31758965488014	6.40445918936211	6.2998827843306	6.44702662359289	6.74683016587059	6.92216001423884	6.59731598376833	0.60644452762391	0.00871349400875324	0.0714618953853032
Merged-chr15-99001740-4	chr15	99001611	99001811	+	989.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15746.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	4.4108037896033	4.44343435582008	4.78757058531193	3.96202391916079	4.71695948612613	4.24639915733991	4.51516360319423	4.57252435804089	0.249700397652928	0.555022403969656	0.801191516655959
Merged-chr17-46646164-4	chr17	46646058	46646258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029091)	promoter-TSS (NM_029091)	-63.0	NM_001316742	27398.0	Mm.391007	NM_025302	ENSMUSG00000002767	Mrpl2	CGI-22|L2mt|MRP-L14|MRP-L2|Rpml14	mitochondrial ribosomal protein L2	protein-coding	7.26210095915278	7.65780431218814	7.11195395964984	7.39165853080987	7.50238841270769	7.69718955241484	7.20502397026868	7.35328598127843	0.101080471254643	0.627485281766812	0.841164852244315
Merged-chr5-120514441-4	chr5	120514307	120514507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 2 of 13)	intron (NM_001177595, intron 2 of 13)	3215.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	6.98044800967402	7.05394925254585	7.90006141486152	7.93914036511405	6.96557542098289	6.60612351532042	7.16433308265753	7.0414037497351	-0.800000843490396	0.00405785998233337	0.040515418106678
Merged-chr19-5929752-4	chr19	5929627	5929827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4911.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	6.92478963803168	7.09472406737849	6.96487220224789	6.68007048507404	7.36488314908241	6.99323315768943	6.94228038434759	6.7373097829885	0.172738935845549	0.444957059478219	0.73115209509395
Merged-chr3-9656765-4	chr3	9656662	9656862	+	948.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46677.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	4.47143231570279	4.73969877403827	4.5176263766463	4.58821573824653	4.76441483422591	4.96985462613014	4.58302978288913	5.11076142861596	0.589317628082056	0.0942219146262197	0.335784391988169
Merged-chr14-55778099-4	chr14	55778012	55778212	+	979.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080435, intron 10 of 25)	intron (NM_080435, intron 10 of 25)	5960.0	NM_080435	104110.0	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	4.76119960381307	5.12275768359454	4.71994831599261	5.11225041158279	4.97198982470449	4.89845937852142	5.32142205607284	5.17799945914178	0.273771296850721	0.414191980841239	0.709005478658793
Merged-chr1-63130062-4	chr1	63129957	63130157	+	868.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045914, intron 1 of 3)	ERVB7_1-LTR_MM|LTR|ERVK	15317.0	NR_045914	100380944.0	Mm.392955	NR_045914	ENSMUSG00000084799	Ino80dos	Gm11602	INO80 complex subunit D, opposite strand	ncRNA	4.15254063287491	4.3147061115991	3.95144569678734	4.02559554722401	4.22169378226101	4.27854772567929	4.26664159271831	4.24067318957298	0.34372409385336	0.388595862648777	0.688981838974675
Merged-chr11-58235439-2	chr11	58235335	58235535	+	808.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	20458.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	3.68163967686646	3.44696884243387	3.48599768824412	3.47961962514088	3.29928397251904	3.15890021536213	3.47196956686651	3.37344042497281	-0.673314629815125	0.198160368836419	0.499640697605649
Merged-chr16-17721344-4	chr16	17721230	17721430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285886, intron 1 of 16)	(CACCC)n|Simple_repeat|Simple_repeat	1570.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	7.36147873857802	7.32293347922247	7.66384941567771	7.52752040716322	7.27993300735574	7.23585207074615	7.23288973661865	7.07839514827912	-0.357423665697221	0.0538621838288598	0.24225934617721
Merged-chr1-88433698-4	chr1	88433609	88433809	+	935.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26699.0	NM_029269	75396.0	Mm.173058	NM_029269	ENSMUSG00000026295	Spp2	0610038O04Rik|pp-24|spp24	secreted phosphoprotein 2	protein-coding	4.77879495907867	5.12497675749068	4.65309902933459	5.07556851646667	5.15259899679093	4.64727250913402	5.37468156947948	4.92776468729438	0.240889788393642	0.501331023527455	0.769176893061019
Merged-chr11-101083122-2	chr11	101083022	101083222	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001305982, exon 2 of 10)	exon (NM_001305982, exon 2 of 10)	557.0	NR_155015	71743.0	Mm.182271	NM_027896	ENSMUSG00000001755	Coasy	1300003G02Rik|Dpck|Ppat|Ukr1	Coenzyme A synthase	protein-coding	4.61333103461135	4.55587132049587	4.76689118288692	4.72658361624512	4.22651195643813	4.86514332380923	4.70784182680541	4.83361101225379	-0.00100337337205087	0.99786735400499	0.999062742638019
Merged-chr18-61093913-4	chr18	61093815	61094015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11657.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	5.37071177771412	6.10794828698859	5.63443305282468	5.55189624802419	5.77356369021614	5.86102846195274	5.86555392985929	5.30156820784157	0.0412693095885019	0.893145253603325	0.960067775059052
Merged-chr19-34666292-3	chr19	34666204	34666404	+	674.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25415.0	NM_008331	15957.0	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	3.11986252020992	3.21457171310904	3.49089571603905	3.25896326693626	3.27030295113589	3.35061465325126	2.76606647842136	2.84804213962393	-0.733738718992425	0.262795436925955	0.574617282737461
Merged-chr9-15493453-4	chr9	15493347	15493547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359604)	promoter-TSS (NM_001359604)	15.0	NM_001359604	170748.0	Mm.86572	NM_133214	ENSMUSG00000058173	Smco4	Fn5	single-pass membrane protein with coiled-coil domains 4	protein-coding	5.03594711305592	5.08015968542756	5.19164256942344	5.35277252160169	4.86665686548886	4.37738780879737	4.97908455802762	4.89435698647017	-0.738762814723001	0.0315523736996079	0.173135588637835
Merged-chr18-60803075-4	chr18	60802957	60803157	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010545)	promoter-TSS (NM_010545)	-792.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	5.02834586251311	4.42437175424468	4.71144106064153	4.69809654164005	5.48151476013299	5.30676780566144	5.31358609741447	5.77483778228309	1.42332273676587	1.47738568996231e-05	0.000390634606336654
Merged-chr18-39835830-4	chr18	39835678	39835878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62281.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	5.74907096793644	5.65012682937904	5.53950988841505	5.95133257406416	5.683759702878	5.62816402378908	5.92086136524828	5.61866101576611	-0.0500135482936351	0.852873550904992	0.944672349828292
Merged-chr3-137879884-4	chr3	137879786	137879986	+	909.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033155, intron 1 of 7)	(TTG)n|Simple_repeat|Simple_repeat	12211.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	4.7111747999773	4.30050964248706	3.90340637218705	4.47845570633021	4.31254556580534	4.20375118180922	4.47339241501527	4.70873495135813	0.123625183266313	0.773617339491096	0.91153187499357
Merged-chr12-83987902-4	chr12	83987827	83988027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134188)	promoter-TSS (NM_134188)	66.0	NM_134188	171210.0	Mm.371675	NM_134188	ENSMUSG00000021226	Acot2	AA571646|MTE-I|Mte1	acyl-CoA thioesterase 2	protein-coding	6.21882008106464	6.07295166896181	6.08359284532653	5.84534381798148	5.95641641360622	5.88125593643274	6.01088251195321	6.33826940530854	0.0134244848907029	0.957610001704777	0.984867785534328
Merged-chr10-80692388-4	chr10	80692311	80692511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	ID_B1|SINE|B4	9409.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	6.21065259573374	6.29718305979579	6.08837267418253	5.75353661553509	6.38347280805588	6.51713541946127	6.01351221044679	6.62046296804464	0.473517078775994	0.0706797931550643	0.285051028847211
Merged-chr13-102664236-4	chr13	102664144	102664344	+	967.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29303.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	4.75058290906157	4.18204003901576	4.75136173185653	4.64640154320242	5.07279757763922	4.96226279447828	5.03026049097846	4.7482117967478	0.744289261367984	0.0373274797683636	0.192782809638104
Merged-chr17-34075439-2	chr17	34075339	34075539	+	790.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16940.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	2.93980840709025	3.10608571361909	2.72463164966034	2.47704929120111	3.25211222745788	3.18102041177954	3.11346807782055	3.33692800942295	1.65897796930338	0.012279637376514	0.0913898273549657
Merged-chr18-32857649-4	chr18	32857576	32857776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110015, intron 16 of 22)	intron (NM_001110015, intron 16 of 22)	-20389.0	NR_045381	75795.0	Mm.382634	NR_045381	ENSMUSG00000097553	4930455D15Rik	-	RIKEN cDNA 4930455D15 gene	ncRNA	5.34800670930136	5.43726358945122	5.84127901705319	5.86364448406128	5.35759355656599	5.35991339005362	5.72313282895965	5.52215809352174	-0.272120461287772	0.358889914129899	0.664829929155009
Merged-chr15-101283356-4	chr15	101283254	101283454	+	865.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026566)	promoter-TSS (NM_026566)	-947.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	4.12618049013532	4.15489510749352	3.81216469045816	4.23663057357905	4.19757650259062	4.10153006508512	4.32041527374683	4.16998770984167	0.242697683112097	0.559004468549977	0.803533645682758
Merged-chr19-16382549-2	chr19	16382449	16382649	+	961.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 6 of 6)	MTD|LTR|ERVL-MaLR	-53118.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	3.24617335366766	3.18536200625813	3.18734595700888	3.17173204327926	3.35860823459501	3.23546840650133	3.17613934014085	3.45746379404531	0.437177458930638	0.408486499666808	0.70438176546703
Merged-chr12-80071043-4	chr12	80070944	80071144	+	907.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41969.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	4.10314762610779	4.30063115450182	3.75097605112333	3.66987665201993	4.84578214848344	4.81701121889266	4.48143945144671	4.15210499564209	1.51701392760297	0.000764474605355137	0.010854685404862
Merged-chr2-132316203-4	chr2	132316160	132316360	+	892.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30321.0	NM_001291039	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	3.87687627041446	3.59277277736451	3.34125458279445	3.68370607519298	3.58925701086694	3.58282638692545	3.62242407413414	3.78442553593089	0.0196285547020264	0.968222293264794	0.988694268692349
Merged-chr19-4628985-3	chr19	4628903	4629103	+	771.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033447, intron 13 of 14)	intron (NM_001033447, intron 13 of 14)	-3386.0	NM_023131	19671.0	Mm.391143	NM_023131	ENSMUSG00000024889	Rce1	D19Ertd283e|D19Ertd98e	Ras converting CAAX endopeptidase 1	protein-coding	3.97629421760028	3.72446416528387	3.22907918489325	3.15550605172213	3.55648343331245	3.60758103124181	3.83133533766538	3.60052191526706	0.278054399343841	0.622036225020511	0.838154589422968
Merged-chr11-85786501-2	chr11	85786401	85786601	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	-10821.0	NR_046194	78420.0	Mm.488197	NR_046194	ENSMUSG00000085514	Bcas3os2	9530048J24Rik	breast carcinoma amplified sequence 3 opposite strand 2	ncRNA	2.81999851448531	2.76932281770052	2.93515408081015	2.55697123956184	2.38819030520088	2.86813907625245	2.68520158010709	2.62556956416044	-0.612912048191926	0.382036899386925	0.684226111802756
Merged-chr5-114651568-4	chr5	114651438	114651638	+	924.636902	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 1 of 15)	intron (NM_022017, intron 1 of 15)	6883.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	3.60047085625763	3.79877479484899	3.74200646865631	3.41897728155376	3.20181084558834	3.43965886755766	3.18556482876757	3.12510606321876	-1.44321368108557	0.00955278938631015	0.0763647104526852
Merged-chr11-21093600-2	chr11	21093500	21093700	+	900.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_023324, intron 1 of 6)	intron (NM_023324, intron 1 of 6)	2276.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	3.71985361357646	3.94624322203992	3.3834938237126	3.26446397075863	3.77936733168362	3.49908413369946	3.49241190503983	3.76661163747223	0.131978803100983	0.805780459648678	0.92529327930282
Merged-chr8-25745186-4	chr8	25745093	25745293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361595, intron 7 of 15)	intron (NM_001361595, intron 7 of 15)	9087.0	NM_028102	72108.0	Mm.246875	NM_028102	ENSMUSG00000061313	Ddhd2	2010305K11Rik|SAMWD1|mKIAA0725	DDHD domain containing 2	protein-coding	6.06440263594851	6.30897896888885	6.1905149151123	6.48358947124016	6.38922277111963	5.86696623338757	6.44037481747722	6.10418079495173	-0.0838753898382938	0.741853902015616	0.898417179766546
Merged-chr5-146819628-7	chr5	146819523	146819723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13267.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	5.71277875024816	5.8529292898436	5.88202431155072	6.12733612537429	5.49522521442804	5.66809204372561	5.80650790026863	5.94352078819599	-0.305427179289352	0.257838015453503	0.569693582005417
Merged-chr2-73486468-4	chr2	73486359	73486559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289723)	promoter-TSS (NM_001289723)	-706.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	5.83335830612486	6.10059105500024	5.28901209578754	5.89077131983611	5.75103770036281	5.78156258441946	5.78123412096472	6.02449053293783	0.0272993564879273	0.923788061452829	0.971863340184091
Merged-chr19-32756287-7	chr19	32756211	32756411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1266.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	6.92967434003002	7.02807567105558	7.0642122221493	6.37570119007015	6.86786371810415	7.01454333076335	6.81688594896151	6.68731582271504	-0.0160160280342027	0.946507580188175	0.980920139816526
Merged-chr5-139668662-4	chr5	139668552	139668752	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67681.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	4.83649625176891	4.62108827640938	4.16346979972247	4.59063952496292	4.82011489124627	4.90094656141185	5.06468937472718	4.79853286916705	0.670449116263932	0.063506526849647	0.267522700753449
Merged-chr8-4677454-4	chr8	4677376	4677576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	64306.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	8.08918991656622	8.28402379706859	7.66759173485107	7.80103496322116	8.33126480709877	8.2809563656498	8.26853864271986	8.10420725113424	0.344935837705883	0.0699872536966599	0.283127179930353
Merged-chr10-31299355-4	chr10	31299260	31299460	+	917.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14045.0	NM_027168	69692.0	Mm.245537	NM_027168	ENSMUSG00000000295	Hddc2	2310057G13Rik	HD domain containing 2	protein-coding	4.36404598375441	4.21915707512896	4.52261147181316	4.38088527743974	4.39791990478802	4.15528413699112	3.90278433152825	4.5196035976618	-0.247902643173834	0.548803737168864	0.797649750024352
Merged-chr18-33794840-4	chr18	33794749	33794949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038151)	promoter-TSS (NR_038151)	-43.0	NR_038152	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	7.64428118113834	7.78848270013984	7.61207652680489	7.56388606739771	7.3084610347229	7.45051487081112	7.4502272746461	7.32225469162466	-0.359827521407926	0.0377707772206604	0.194324983866237
Merged-chr10-77623144-5	chr10	77622943	77623143	+	935.159973	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019803, intron 1 of 5)	intron (NM_019803, intron 1 of 5)	722.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	4.91486134115574	4.66240280968991	4.51107739909605	4.50671303771783	4.58724000261281	4.68611487149097	4.30699462471682	4.84784988764055	-0.0662292985228395	0.858808006100268	0.946576014812915
Merged-chr8-111243778-4	chr8	111243674	111243874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	15428.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	6.03553321588214	5.76909705653574	6.09516488393365	5.70553421742775	5.87886916662344	5.58065403536593	5.63888240260195	5.90630066739268	-0.213190162682493	0.42504379896607	0.716641115147179
Merged-chr7-17060191-4	chr7	17060109	17060309	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162950, intron 1 of 14)	intron (NM_001162950, intron 1 of 14)	2218.0	NM_001162950	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	4.1962214707261	3.90574229438588	4.28916524277545	4.4113747746627	4.73935462172174	4.22148927979136	4.31376769575375	4.52873217997291	0.606852748271406	0.149178661254123	0.431238595191782
Merged-chr4-126556941-4	chr4	126556836	126557036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175554)	promoter-TSS (NM_175554)	-44.0	NM_175554	269582.0	Mm.243962	NM_175554	ENSMUSG00000042489	Clspn	B130025E01|C85083|E130314M08Rik	claspin	protein-coding	5.90755917500919	6.10430077195172	5.93188573179548	6.01688136096934	6.02830016007734	6.15273586855404	6.22442010092935	6.059353310699	0.18291643885469	0.432375413142111	0.722408561383088
Merged-chr16-25058227-4	chr16	25058126	25058326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1413.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	7.44381845494229	6.97962774661744	7.71770070432184	7.67758726007082	6.85089497473731	7.2489210259721	6.89117691172688	7.18481810034425	-0.59495819149809	0.0101256506463141	0.0796302825493306
Merged-chr7-79924755-4	chr7	79924655	79924855	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027420)	TTS (NM_027420)	-4115.0	NM_009682	11778.0	Mm.220173	NM_009682	ENSMUSG00000063801	Ap3s2	[s]3B	adaptor-related protein complex 3, sigma 2 subunit	protein-coding	5.18546841544651	5.40117180252838	4.97361552424752	5.20257582120916	5.60860638540602	5.11372317420367	5.42338143787128	5.27714419397225	0.321666046243301	0.292969385333324	0.605495583003503
Merged-chr10-120980011-4	chr10	120979905	120980105	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081193)	promoter-TSS (NM_001081193)	-675.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	4.6219476052313	4.75240327656682	4.41733581865737	4.64933589433453	4.61883613889325	4.40423027461683	4.44116199612196	4.41461157428942	-0.312027978099742	0.390483939878996	0.69058015678842
Merged-chr1-52748432-4	chr1	52748323	52748523	+	922.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21065.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	4.32788484642027	4.37322746805292	4.13427487411959	4.30021008410672	4.68037052661801	4.70617879990626	4.58869208957119	4.02318031548008	0.559124926623542	0.165406240286217	0.456070144386311
Merged-chr3-59185799-4	chr3	59185692	59185892	+	957.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302203, intron 1 of 2)	intron (NM_001302203, intron 1 of 2)	9312.0	NM_001302203	84111.0	Mm.60267	NM_032399	ENSMUSG00000051431	Gpr87	-	G protein-coupled receptor 87	protein-coding	4.3659700925119	4.68027661153872	4.41089368501964	4.14469632314904	4.49819372588086	4.4962437090123	4.7288340328175	4.31818318538564	0.263188887432549	0.500107133871885	0.768714895599853
Merged-chr16-36920633-4	chr16	36920536	36920736	+	932.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030035, intron 14 of 21)	intron (NM_030035, intron 14 of 21)	-14347.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	3.85937317018702	3.54813518516177	4.95371656329856	4.7703016737606	4.25165874430703	4.0465332111535	4.46155196347792	3.97455345868085	-0.49587492643892	0.57468621043155	0.81250997230449
Merged-chr1-138253116-1	chr1	138253016	138253216	+	545.0	f0_balb.idr	Intergenic	Lx5|LINE|L1	-20622.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	3.10345873168612	2.83728769198983	3.04942864468225	2.9628085239704	2.80798513486991	2.84127627844549	2.92249047362227	2.86911453416057	-0.578838361653609	0.338860239940376	0.648184761990371
Merged-chr1-154093553-4	chr1	154093469	154093669	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107618.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	6.15772261838213	6.09485425568518	5.63731851848477	5.87888430581495	5.62287735064419	5.7868236838774	5.27507991191236	5.5783936487112	-0.621411165290862	0.0265591110234058	0.154650765995992
Merged-chr9-32624000-3	chr9	32623881	32624081	+	921.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72061.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	3.75279559180035	3.68355004360719	3.75336363122968	4.01319136321832	3.33745029552374	3.48522290436683	3.2953873989714	3.36922657180312	-1.50537114383803	0.00355236069415473	0.0364657458680761
Merged-chr6-116670292-6	chr6	116670209	116670409	+	895.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	intron (NM_178045, intron 1 of 10)	3527.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	3.72795311153505	3.9140658737787	3.84126453323524	3.26384840833283	4.40745450649805	4.21411307036421	4.06843531373204	4.03906630611246	1.37833406932826	0.00414169216765687	0.0412021672678754
Merged-chr6-124738665-4	chr6	124738565	124738765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077705)	promoter-TSS (NM_001077705)	44.0	NM_001077705	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	7.51357373491873	7.37250854742758	6.93891560196296	7.06588880326164	7.34789891639835	7.25955228024497	7.48637810174279	6.96127890689376	0.0564998598635549	0.796967684385459	0.921466077162776
Merged-chr11-97830684-4	chr11	97830592	97830792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010688, intron 4 of 6)	intron (NM_010688, intron 4 of 6)	-10088.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	5.23412108233097	5.25484722111958	5.63174246457411	5.26604355367928	5.34357728278747	5.05849051198006	5.07933973246776	5.06568873823573	-0.360433420989531	0.241239760302861	0.551836536802638
Merged-chr5-5232724-4	chr5	5232633	5232833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 3 of 14)	L1_Mur3|LINE|L1	33335.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	6.08526960992951	6.56922799155432	6.12637540568346	6.27741118750388	5.49975614534882	5.77656004524912	5.83471365424001	5.86044865983002	-0.859377089538401	0.000954674299781141	0.0129680843481149
Merged-chr3-136113178-4	chr3	136113117	136113317	+	936.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 7 of 16)	intron (NM_001033350, intron 7 of 16)	212849.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	5.74287522931319	5.52796963307305	5.67838301885946	5.65726734295447	4.98055234376148	4.81093836526255	4.99048424493374	4.89284593141624	-1.33771204903924	6.81365588134273e-06	0.000195560166120199
Merged-chr2-36203593-3	chr2	36203487	36203687	+	639.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26839.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	3.01489151277388	3.10760741437399	3.33038127953644	3.28380349151745	3.20442700829683	3.60501794043067	3.37144082501588	3.38333456332633	0.70861406619835	0.197946562481666	0.499313855371838
Merged-chr6-88898747-4	chr6	88898649	88898849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008564)	promoter-TSS (NM_008564)	31.0	NM_008564	17216.0	Mm.16711	NM_008564	ENSMUSG00000002870	Mcm2	AA959861|AW476101|BM28|CDCL1|Mcmd2|mKIAA0030	minichromosome maintenance complex component 2	protein-coding	7.62594829869542	7.76761225057916	7.12606010978642	7.3716964994358	7.68298220825199	7.5939884821839	7.63925886891064	7.54378675233802	0.163111859770611	0.412536459933405	0.707618200495277
Merged-chr4-41353084-3	chr4	41352980	41353180	+	857.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355508, exon 1 of 7)	5' UTR (NM_001355508, exon 1 of 7)	1117.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	3.05778921708263	3.23138668509947	3.05811367168476	3.27655835490024	3.24226979640771	3.29705753401515	3.28909027554009	3.55085900494336	0.652726686811229	0.235218963932159	0.545195411514106
Merged-chr6-97464355-4	chr6	97464230	97464430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-5044.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.06769014344992	7.57246137622237	6.83166162962859	6.67793835434424	6.97795931220009	7.19696214716	7.20097171148877	7.00243133447794	0.0220392342130809	0.929047763413931	0.974317157505369
Merged-chr8-22136736-3	chr8	22136615	22136815	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011848, intron 11 of 15)	RLTR44B|LTR|ERVK	-11648.0	NM_001347318	330721.0	Mm.113940	NM_177898	ENSMUSG00000037738	Nek5	6530411J22|BB049667	NIMA (never in mitosis gene a)-related expressed kinase 5	protein-coding	6.38990414523225	6.32924984758128	6.46756983860285	5.37422339649627	3.68663086774233	4.09010837419734	4.13889388875987	4.08621771491884	-5.30141245003637	8.24508317101611e-20	2.67980262570665e-17
Merged-chr2-160621583-5	chr2	160621404	160621604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24393.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	5.69238972952716	5.32653134620568	6.0830216202141	5.91572436272259	5.17823141080381	5.81748246343821	5.71387487372605	5.87742822767164	-0.200864141091966	0.528135821255205	0.784805420065223
Merged-chr1-62703415-8	chr1	62703370	62703570	+	970.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010939, exon 1 of 16)	5' UTR (NM_010939, exon 1 of 16)	153.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	4.33559927411391	4.48467339260071	4.73176730992628	4.41842005804034	4.19787975309417	3.88382458102917	3.98400492570923	4.05128215659337	-1.1291609641753	0.00705145085444195	0.0611867878054765
Merged-chr16-24933914-4	chr16	24933814	24934014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-125725.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	7.07651608538582	7.07798002607105	6.77832157675696	6.674486373967	6.90264119716458	7.06740324012205	7.08739489202542	6.80255406598627	0.0886881746118087	0.675035984750996	0.866516482716234
Merged-chr2-163401433-4	chr2	163401324	163401524	+	930.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3431.0	NM_001205076	59091.0	Mm.34459	NM_021566	ENSMUSG00000017817	Jph2	1110002E14Rik|JP-2|Jp2	junctophilin 2	protein-coding	3.91006866920203	4.30977350538843	3.85448151869446	4.00769858619805	4.58901157368871	3.79135131335028	4.38573103658117	4.11142494070946	0.575114962880082	0.214605737171158	0.520492768369423
Merged-chr11-103027025-4	chr11	103026917	103027117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1526.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	7.20644882603175	7.43734652044285	7.54083683036554	7.20928742894089	7.58268704406397	7.45267430750653	7.36355976452636	7.74699106913397	0.261414014539496	0.17188541684591	0.465124394984604
Merged-chr7-120677506-4	chr7	120677382	120677582	+	982.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164580)	promoter-TSS (NM_001164580)	-138.0	NM_001164580	233812.0	Mm.276479	NM_001164580	ENSMUSG00000046096	Mosmo	Atthog	modulator of smoothened	protein-coding	5.50889269605671	5.20204238774902	5.75045865222357	5.47153782928596	5.2655726097902	5.13520960978792	5.7209738508199	5.1397864328557	-0.271197276824155	0.389091508584369	0.689374802932542
Merged-chr17-34934051-4	chr17	34933962	34934162	+	879.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010893, exon 4 of 6)	exon (NM_010893, exon 4 of 6)	2809.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	3.89449356486099	3.94258715806218	4.03407510699536	3.74801987568641	4.05217654175333	3.6799863479289	4.09969687629313	3.42882488946299	-0.145762616127816	0.768122594600407	0.909266558474345
Merged-chr11-70130116-3	chr11	70130021	70130221	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145137)	promoter-TSS (NM_145137)	-236.0	NM_145137	216864.0	Mm.222465	NM_145137	ENSMUSG00000040950	Mgl2	CD301b	macrophage galactose N-acetyl-galactosamine specific lectin 2	protein-coding	4.1528166133887	3.52221698407033	3.70841544420064	3.64581174375982	3.70984236553743	3.65532399998717	3.63969434581951	3.85680190682659	-0.158367324181885	0.746892747154634	0.900260424529146
Merged-chr9-86583894-4	chr9	86583786	86583986	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008615, intron 13 of 13)	intron (NM_008615, intron 13 of 13)	11833.0	NM_027100	69519.0	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	4.75515676722132	4.58504547716624	4.59590146865294	5.0043057184536	4.89378470944096	4.89019893355051	4.65680496921761	4.82600581295614	0.114005398051466	0.745196446501899	0.899431814827356
Merged-chr11-118227852-4	chr11	118227750	118227950	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-15108.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	5.34159543122498	5.00561681175855	5.99643973408129	6.12178684303523	4.66819415860414	4.6974652044791	5.22413907683386	5.14804159132893	-1.34775126394378	0.000607848809130225	0.00902881268469956
Merged-chr18-82822473-3	chr18	82822381	82822581	+	877.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33416.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	3.98226317282719	3.81577449766031	3.50587489823677	3.53998980001569	3.68139463034491	3.91333191024918	3.67029335657318	4.14578736134197	0.423652823942752	0.385279253627639	0.686693509464186
Merged-chr2-49453004-4	chr2	49452920	49453120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172663, intron 1 of 13)	intron (NM_172663, intron 1 of 13)	1534.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	7.21109194560705	7.18693941983768	7.08050457801444	7.32441993594175	7.7149354429938	7.60799131134772	7.57144031491208	7.29512314829841	0.467693361173041	0.0129539761506581	0.0947734678207107
Merged-chr10-67185695-4	chr10	67185589	67185789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242396)	promoter-TSS (NM_001242396)	-61.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	7.54131385135939	7.69118473913837	6.84104298971478	7.37122411293089	7.34021801089711	7.61883552881572	7.47877331330894	7.43658397499716	0.0907965926498211	0.682715190926493	0.86997749614016
Merged-chr7-46985934-4	chr7	46985854	46986054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033461, intron 3 of 4)	(TG)n|Simple_repeat|Simple_repeat	9322.0	NR_033461	629141.0	Mm.229259	NR_033461	ENSMUSG00000056509	Gm9999	-	predicted gene 9999	ncRNA	5.36509002446337	5.42392804654641	5.36600693909805	5.42578563813882	5.6102772935159	5.57225170381171	5.81825502206107	5.61353723917689	0.440880901935027	0.0964768986183091	0.34034441030642
Merged-chr6-5291720-4	chr6	5291619	5291819	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183308, intron 1 of 8)	intron (NM_183308, intron 1 of 8)	6654.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	4.99713285872093	5.46509419572355	5.46146060907506	5.14694758657252	5.0297711362854	4.72702738965437	5.136173297835	4.26784853096865	-0.850333825708946	0.0263548634263297	0.153939833161937
Merged-chr2-128126602-3	chr2	128126521	128126721	+	953.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284410)	promoter-TSS (NM_001284410)	583.0	NM_009754	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	4.43052625623541	4.86546956028557	4.43124033832585	3.84080971356493	3.94168660889297	4.72730327994307	4.36731679003704	4.73266269937184	0.0828150831777051	0.862829728963611	0.948353262475307
Merged-chr6-42382269-4	chr6	42382201	42382401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9033.0	NM_023580	13835.0	Mm.133330	NM_023580	ENSMUSG00000029859	Epha1	5730453L17Rik|AL033318|Eph|Esk	Eph receptor A1	protein-coding	8.19986693976911	7.63806035142951	7.90891144548018	8.20382418565541	7.95823725030091	7.7723774894158	8.31448983862306	8.22439830074917	0.093243826908542	0.653910696851475	0.855289789333812
Merged-chr10-20105525-4	chr10	20105414	20105614	+	939.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 18 of 29)	intron (NM_008580, intron 18 of 29)	-43406.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	5.16235213736123	4.42790196244798	4.85438517307669	4.93284456403101	4.72775198023371	4.99129670825854	4.32745881259748	4.62170083045957	-0.378007738034192	0.32962944873557	0.640974929073915
Merged-chr13-65112140-4	chr13	65112055	65112255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083901, intron 2 of 12)	intron (NM_001083901, intron 2 of 12)	827.0	NM_001083901	66631.0	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	6.6138854645387	6.79712079047992	6.6757132669802	6.89414224981599	6.39764309138923	6.33015208393072	6.5966638989432	6.5135254455507	-0.432583978409461	0.0412607528622748	0.205535665755746
Merged-chr8-45875454-4	chr8	45875347	45875547	+	910.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10038.0	NM_016798	53318.0	Mm.282900	NM_016798	ENSMUSG00000031636	Pdlim3	AI463105|ALP|Actn2lp	PDZ and LIM domain 3	protein-coding	5.46867146782811	5.06633133686689	5.395886276213	5.5132322623444	4.27953563867335	4.70540672134755	4.63990359811428	4.86543492945989	-1.50303712152308	1.95729440632675e-05	0.00049899089737798
Merged-chr10-117209801-4	chr10	117209699	117209899	+	981.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14708.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	5.02587395743295	5.44283128387687	4.91225689444674	5.10466500977165	5.29759154446831	5.2038445151914	5.20325201603437	5.64522234859319	0.383327992061155	0.226026057091567	0.534601871393655
Merged-chr8-22928771-4	chr8	22928647	22928847	+	915.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 13 of 17)	intron (NM_001081149, intron 13 of 17)	-46089.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	4.29701783266272	4.03958315925835	4.25347047074337	4.58287946477314	4.02474506029653	4.33401256184104	4.32069322840362	4.29499170203791	-0.20014337174548	0.631558129587276	0.843471857285588
Merged-chr6-24664281-4	chr6	24664181	24664381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028459, intron 1 of 10)	intron (NM_028459, intron 1 of 10)	714.0	NM_001167745	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	6.47881499947769	6.63437730784275	6.93746307440318	6.48636071257891	6.68259642005679	6.70706489959434	6.48071174506644	6.3097529315593	-0.116893416860312	0.612289152819059	0.832715671052909
Merged-chr10-37359241-5	chr10	37359230	37359430	+	940.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-220404.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	3.40878072079964	3.3359888836866	3.51466286627338	3.7671186388741	3.34218261324911	3.20987027339911	3.28282089144605	3.29272104128331	-0.864999407707836	0.110263499239491	0.366691625977182
Merged-chr19-32485907-4	chr19	32485802	32486002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010799, exon 1 of 5)	5' UTR (NM_010799, exon 1 of 5)	133.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	6.76262678254514	6.53060619780741	6.30400376942396	6.45506771353312	6.43193945267655	6.58994017948434	6.21329141107159	6.260638046925	-0.202220115249752	0.37936521147115	0.681941469992802
Merged-chr15-39933610-4	chr15	39933503	39933703	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172814, intron 1 of 6)	intron (NM_172814, intron 1 of 6)	10391.0	NM_001347036	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	5.2059696765294	5.66996616277272	5.63696088753801	5.31586920365609	5.02244194949985	5.24893001861263	4.9747595939336	4.91788563705704	-0.780343418051136	0.012766094853459	0.0939482096114411
Merged-chr1-95468337-4	chr1	95468255	95468455	+	726.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	154727.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	3.91945881559846	3.85051183295081	4.01450566145184	3.78918848589426	4.09672109292845	4.22719149365675	3.69346144318642	3.58520808545294	0.115922859389337	0.806155822815342	0.925358561244123
Merged-chr7-98082623-4	chr7	98082524	98082724	+	963.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 18 of 48)	intron (NM_008663, intron 18 of 48)	26624.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	4.64945910576814	4.83117049640983	4.82792002701292	4.54493484721274	4.41703018831491	4.15275545586943	4.55035395847283	4.7211747057296	-0.518413828509731	0.170382229935644	0.463559236472334
Merged-chr14-27379553-4	chr14	27379447	27379647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 3 of 10)	intron (NM_027871, intron 3 of 10)	18158.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	6.62089236380576	6.7991144018559	6.83356954595479	6.77764456810114	6.61803448779686	6.36476713830532	6.37179536088475	6.22409507239364	-0.503961407461182	0.0201241349941719	0.128583106351002
Merged-chr2-91924229-4	chr2	91924117	91924317	+	862.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007699, intron 1 of 1)	intron (NM_007699, intron 1 of 1)	2028.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	4.26817880142962	3.92948623053938	3.48988607747548	3.59610636821321	4.1373316611246	3.74476021622059	4.12675403853988	4.37774362744497	0.708268419335865	0.15902620577786	0.446219364628123
Merged-chr4-145276756-4	chr4	145276648	145276848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009401, intron 11 of 12)	intron (NM_009401, intron 11 of 12)	-29878.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	6.86286732894165	6.78021257450229	6.66622142585648	6.63841878981836	6.63645158669399	6.91652135917832	6.6322546730079	6.58255785498872	-0.0565529828533082	0.784923549047001	0.916319510496654
Merged-chr1-94147239-4	chr1	94147125	94147325	+	938.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94672.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	4.51857037624561	4.41110535300015	4.60543137154795	4.82649462439092	4.81699673503605	4.78005363066935	5.00215575376605	4.79533572719381	0.485326614044129	0.169114142510863	0.46161486940974
Merged-chr7-127774126-4	chr7	127774010	127774210	+	804.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198424, exon 2 of 2)	exon (NM_198424, exon 2 of 2)	-3279.0	NM_178029	233904.0	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	3.58714439104449	3.66268931907446	3.85690933576242	3.54174471767797	3.88059843152497	3.87471077930124	4.17215899084163	3.85462063170922	0.871307542620339	0.0549398412988685	0.244869315204268
Merged-chr13-24318876-3	chr13	24318766	24318966	+	699.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8538.0	NM_001284519	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	3.80174452789571	3.60594677246239	3.89391787529537	3.54808046918803	3.41361380036051	3.65701825420067	3.46761742601786	3.84654254957758	-0.340138424238447	0.495573182061171	0.765869198096576
Merged-chr6-136543311-4	chr6	136543219	136543419	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	24468.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	4.8630832624436	4.93185906275708	5.13204069927084	5.30155442939097	5.3964144367443	5.58454256570588	5.8023099233967	5.40737877216069	0.83177314673668	0.00787111136492776	0.0664521214380493
Merged-chr11-53796957-4	chr11	53796855	53797055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	26482.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	6.695551361553	7.04327898360131	6.47759361041428	6.07031897581231	6.89865776685517	6.45225164083196	6.51064404878004	6.09798983937107	-0.121873779608525	0.68001943824625	0.868593041138696
Merged-chr15-86180603-3	chr15	86180512	86180712	+	892.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-5116.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	3.5502274117816	3.17657310885669	3.10218571296912	3.55957991456548	3.11795346782332	3.40193337263544	3.21829236731498	3.34411117769289	-0.363987749871681	0.520687079555971	0.780877030797574
Merged-chr4-137862214-4	chr4	137862128	137862328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199307)	promoter-TSS (NM_199307)	-9.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	7.07153064015378	7.06595575684898	7.30209280291967	6.92364834499491	7.11195704621838	6.99905601104635	7.11805987207169	7.04359363086118	-0.0209729914210861	0.913470784492035	0.967555550173756
Merged-chr3-88503463-7	chr3	88503376	88503576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111102)	promoter-TSS (NM_001111102)	-124.0	NM_001002011	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	5.55616133281125	5.14987984820806	5.3470765022376	4.93043048216381	4.8784270225857	5.7040476107587	4.92410501570175	5.31442553319812	-0.0255846790470027	0.943454890983562	0.979567973035961
Merged-chr7-80232770-4	chr7	80232655	80232855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011870)	promoter-TSS (NM_011870)	50.0	NM_001291276	23991.0	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	8.41036894991603	8.48013696398513	8.54170330694656	8.33752806425339	8.68152571201675	8.831932694699	8.53048628624022	8.25025766737831	0.189489722829915	0.280366529302044	0.592346638474506
Merged-chr1-106214309-1	chr1	106214209	106214409	+	849.0	f0_balb.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	42440.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	3.35636386326626	3.38513316599334	3.70816052583123	3.66078968162289	3.24959141458636	3.14018228404174	3.28602894010512	3.41151702121181	-0.94790843124231	0.0800912228688543	0.306561257936233
Merged-chr5-67828620-4	chr5	67828533	67828733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	MLT1A|LTR|ERVL-MaLR	18798.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	5.84650153024576	5.32902800029137	5.67216842657102	6.35666389317083	5.80791765266787	5.76707856823957	6.16113166612105	5.77121249624094	0.0154912608344889	0.961648737480001	0.986267404712186
Merged-chr11-63813045-4	chr11	63812961	63813161	+	970.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10D2|LTR|ERVK	109223.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	4.98580765856354	4.72889321669623	4.90843662784363	4.91271545598478	5.54957909906366	5.77803157327668	5.45643506261845	5.50602077308158	1.25154798299571	2.04626812945087e-05	0.000519256039879442
Merged-chr6-127574195-4	chr6	127574081	127574281	+	979.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3794.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	5.02734848034634	4.80164042702916	5.21165900690146	5.25527904923997	4.82224357276888	4.53872252152749	5.06728701721438	4.92205133358416	-0.475424707987262	0.16533158061404	0.455989631098548
Merged-chr15-100614627-4	chr15	100614513	100614713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045701, exon 2 of 2)	non-coding (NR_045701, exon 2 of 2)	497.0	NR_045701	78445.0	Mm.44383	NR_045701	ENSMUSG00000097093	C330013E15Rik	-	RIKEN cDNA C330013E15 gene	ncRNA	5.45638566307229	5.20523346925054	5.5676847451048	5.94011168373007	5.51313106147664	5.41609638823998	5.37153037330164	5.75890493541441	-0.11419566409529	0.714144130148239	0.885697313573214
Merged-chr19-23028401-4	chr19	23028300	23028500	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112826.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	5.47575391578257	5.19611235893282	5.52769730540426	5.31934521350774	5.13449238964624	5.36044044311247	5.39622989092077	4.76006044466694	-0.357914253625944	0.258837914661289	0.570609016590557
Merged-chr4-88862781-4	chr4	88862671	88862871	+	943.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	12684.0	NM_010502	15962.0	Mm.57127	NM_010502	ENSMUSG00000095498	Ifna1	Ifa1	interferon alpha 1	protein-coding	4.66529598382907	4.68466302493585	5.16595809832683	4.70834112592469	4.17176168879156	4.49599999848007	4.56553596887407	4.45540879819939	-0.873688994425606	0.0221636899051846	0.137181676848795
Merged-chr1-152810003-4	chr1	152809896	152810096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 2 of 15)	intron (NM_010877, intron 2 of 15)	9843.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	5.69977171973906	5.81209744593344	5.59135386127028	6.18685557714998	5.70474790589739	5.82406728555274	5.8647944404203	6.05858878239637	-0.00444716402596843	0.987317144256372	0.995258250959001
Merged-chr4-45472250-4	chr4	45472159	45472359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 2 of 5)	intron (NM_001033306, intron 2 of 5)	58569.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	7.09373908854932	6.70330769777035	7.7982029150824	7.83514716037254	6.55694511590275	6.36222713359537	6.55100822687828	7.01802075613397	-1.10621711063159	0.000189964363978799	0.0034840178983888
Merged-chr4-47398422-4	chr4	47398300	47398500	+	919.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312869, intron 3 of 7)	intron (NM_001312869, intron 3 of 7)	12184.0	NM_001312869	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	4.3152941683207	3.92502872102196	4.17859466043376	4.72819264718962	4.45090968472579	4.09332586273211	4.37972749285218	4.31325963351762	-0.0489952812207305	0.912425885702508	0.967207481621882
Merged-chr3-103212379-4	chr3	103212304	103212504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	40749.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	5.59334998829982	5.80779399250559	5.70235299273577	5.18817494301785	6.18361328172671	6.04667981915761	6.19268250902666	5.56191687197385	0.727148319162105	0.014243973687614	0.101124257242238
Merged-chr10-110918946-8	chr10	110918838	110919038	+	958.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1238.0	NM_007792	13008.0	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	3.86653186839236	3.53151166579136	3.54740088658538	3.86245734930956	3.71775278944161	3.88886403580257	3.53467016348471	4.04026302005479	0.254245962961655	0.602958553821705	0.82789000124091
Merged-chr13-85223370-3	chr13	85223274	85223474	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145452, intron 20 of 24)	intron (NM_145452, intron 20 of 24)	33989.0	NM_023243	66671.0	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	5.53044045512271	5.83020793674009	5.71428822688539	5.28671899798252	3.37321585181793	3.87180227096084	3.93604082863348	3.80615132226839	-5.553775165679	3.09728027489351e-15	5.19955926147747e-13
Merged-chr18-9491286-4	chr18	9491241	9491441	+	970.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41187.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	5.04064129425575	4.22803240462171	4.91811323236237	5.21390526022375	4.73111320424373	4.5859501299914	4.23541275202287	4.54051295201415	-0.774487440557272	0.0662368702259672	0.274188684025531
Merged-chr14-41006428-4	chr14	41006333	41006533	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316732, intron 1 of 6)	intron (NM_001316732, intron 1 of 6)	487.0	NM_001316739	70564.0	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	4.54241416269447	4.23908298106991	3.87868470130939	4.52586714954704	4.49422557830578	4.28231370887416	4.52157742361853	4.25025457894673	0.145976486706837	0.729037206333024	0.892414860521055
Merged-chr1-177261023-4	chr1	177260922	177261122	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12255.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	5.99632299961387	6.06643300253604	6.01788978980265	6.09929628121151	5.82659701354428	5.76313292026196	5.34145738030173	5.52296138773536	-0.669224651641364	0.0107278698244659	0.083153549628189
Merged-chr11-115639144-4	chr11	115639038	115639238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10843.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	7.44385243180838	7.38510545911247	7.317363795064	7.28841017504632	7.21762371943905	7.41980440516355	7.41752998839483	7.07376473367067	-0.0933418657876945	0.613433154293413	0.83329826063945
Merged-chr18-5348990-4	chr18	5348902	5349102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14195.0	NM_001360447	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	5.77575053967335	5.74358289565824	5.45895062531316	5.53083992978784	5.55283542720877	5.90292954731409	5.49014375390898	5.88447594739479	0.141488322682487	0.607434057890863	0.829999364685165
Merged-chr12-81657807-4	chr12	81657705	81657905	+	918.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033149, intron 1 of 2)	intron (NM_001033149, intron 1 of 2)	26556.0	NM_001033149	69480.0	Mm.130002	NM_001033149	ENSMUSG00000042734	Ttc9	-	tetratricopeptide repeat domain 9	protein-coding	4.4206821726057	4.27393313235618	4.33479048799093	4.19211461470378	4.6324426559176	4.63188631490288	4.22447165322061	4.49952148328637	0.502679074725001	0.183678839514688	0.480761104819123
Merged-chr7-80202733-2	chr7	80202633	80202833	+	998.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	4292.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	3.13049769297765	2.91849623709592	3.01549855697772	3.24239221816685	2.92172567752175	2.92591685856841	3.06308200259462	3.01401994836923	-0.45960840882855	0.436995538644569	0.725411167358889
Merged-chr9-65460872-4	chr9	65460766	65460966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138584)	promoter-TSS (NM_138584)	-71.0	NM_138584	27965.0	Mm.272475	NM_138584	ENSMUSG00000032388	Spg21	ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST	SPG21, maspardin	protein-coding	7.32132691601883	7.4857480807282	7.90145945558715	7.60597551409955	7.59632742396651	7.66210324957422	7.49433821297404	7.58877348401193	-0.012682394314408	0.94702307550367	0.981023220226121
Merged-chr14-103719035-4	chr14	103718941	103719141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19609.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	5.78453380016145	5.6839196898135	5.76112684483938	5.89984199965658	5.73853750072219	5.8604407494073	5.78004177058128	5.91858023856412	0.044506354345692	0.858347939634824	0.946576014812915
Merged-chr8-56292499-4	chr8	56292321	56292521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2131.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	7.49653674083957	6.95769054800041	7.89585789487993	7.61424604232831	6.80836231556574	6.85800590671446	7.12911615845606	7.18299868625976	-0.719528643078172	0.00288150916272337	0.0309963640159417
Merged-chr12-3791971-4	chr12	3791896	3792096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14984.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	7.77027073325743	7.88168118858258	7.61902809350392	7.4508007947997	7.27871596055729	7.77037515231578	7.41811942951105	7.44007400590081	-0.266523344457142	0.182213518650347	0.47878218634963
Merged-chr13-94849560-4	chr13	94849442	94849642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26085.0	NM_011021	18420.0	Mm.42051	NM_011021	ENSMUSG00000021685	Otp	-	orthopedia homeobox	protein-coding	5.61589948168246	6.10709331343274	6.13554017121957	6.08035446732553	5.96278781089806	5.67588840355579	6.00407946011478	6.24196423873154	-0.0308145188607766	0.908213784421382	0.966015375991177
Merged-chr10-68725578-4	chr10	68725486	68725686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	1840.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	5.45687452561727	4.64211802821595	6.1470721890139	6.0830227093028	5.87558306224264	5.17527586873916	6.07943514530332	5.91020590161522	0.148388208095364	0.82343007416349	0.932313798231142
Merged-chr5-64812251-3	chr5	64812149	64812349	+	840.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	8726.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	3.52041127553499	3.05517904218366	3.47590018994214	3.26251634192877	3.01674809143096	3.13846820549285	2.95480280747833	3.27113316009625	-0.944577104043418	0.110090398059652	0.366465156595798
Merged-chr8-83331811-3	chr8	83331771	83331971	+	724.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170691, intron 1 of 8)	intron (NM_001170691, intron 1 of 8)	615.0	NM_001170691	244548.0	Mm.38762	NM_178736	ENSMUSG00000035151	Elmod2	9830169G11Rik	ELMO/CED-12 domain containing 2	protein-coding	3.00925197630452	2.91879029556103	2.87643023749697	2.92565068015463	3.22445333125651	3.40704785633568	3.06113377059267	3.39024154425982	1.38928841916554	0.0144353235036388	0.1020552137133
Merged-chr5-25086409-3	chr5	25086306	25086506	+	831.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 1 of 15)	MIRb|SINE|MIR	14236.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	4.19784785709867	4.04251926899697	3.79941927264765	4.31560469887603	3.07232370039428	3.49311230087481	3.73089582462467	3.68896408152124	-1.83222186897733	0.00115467008348089	0.0151053596530208
Merged-chr6-120454845-4	chr6	120454742	120454942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	-8355.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	7.29194849052993	7.5841867680678	7.52983080087685	7.52847240054062	7.474699706348	7.70681373277781	7.37050315484688	7.26624708851355	-0.0377022085591409	0.841075720123755	0.939525416908854
Merged-chr4-145231929-4	chr4	145231821	145232021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	14949.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	6.74504138184662	6.39978613960753	6.85357637908032	7.06232478378204	6.1545010458949	6.32758086359986	6.84404350565504	6.3879396566597	-0.498468523760106	0.0552754944128734	0.245843945360736
Merged-chr11-4261311-4	chr11	4261218	4261418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008501, intron 1 of 3)	intron (NM_008501, intron 1 of 3)	3750.0	NM_008501	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	5.42130679192655	5.42548318241865	5.36565918723709	5.43110463031092	5.07351256264333	5.14030771626291	5.62047772052182	5.14150944048119	-0.27746894800835	0.355916019090839	0.662610987347058
Merged-chr5-108447206-4	chr5	108447110	108447310	+	968.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172883, intron 1 of 9)	intron (NM_172883, intron 1 of 9)	1890.0	NM_001359977	243197.0	Mm.106818	NM_172883	ENSMUSG00000029490	Mfsd7a	4732482E20Rik|Mfsd7|Slc49a3	major facilitator superfamily domain containing 7A	protein-coding	4.69588989396801	6.11588587628311	5.14192168797798	4.5397920397034	5.10586011513805	5.04282901777522	4.87669312847427	4.34453881832839	-0.790812910067263	0.270798162659842	0.582604942081796
Merged-chr6-142339186-4	chr6	142339090	142339290	+	952.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6507.0	NM_183165	232491.0	Mm.490474	NM_183165	ENSMUSG00000041671	Pyroxd1	-	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding	4.43503737293146	4.64698670280615	4.65016274253416	4.12799772108928	5.03066774764345	4.74398957281112	4.81028222534454	4.795966616912	0.847626884573919	0.021297475645233	0.133491812165554
Merged-chr17-34862284-4	chr17	34862192	34862392	+	937.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013484)	TTS (NM_013484)	222.0	NM_001142706	14962.0	Mm.653	NM_008198	ENSMUSG00000090231	Cfb	AI195813|AI255840|B|Bf|C2|Fb|H2-Bf	complement factor B	protein-coding	4.63590577930178	4.79985280600045	4.24908532737457	4.58562391272542	5.35123473000383	5.03972955515026	4.97552094070029	4.59098300547867	0.897946276083173	0.0168950633205222	0.114096177617784
Merged-chr17-14960979-5	chr17	14960885	14961085	+	778.780029	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024250, intron 1 of 11)	CpG	275.0	NM_001360983	72057.0	Mm.440085	NM_024250	ENSMUSG00000023883	Phf10	1810055P05Rik|AV024533	PHD finger protein 10	protein-coding	3.27750589447133	3.33386151338158	3.97777207267662	2.90068761082012	3.59192629926516	3.69365671533004	3.39063727273088	3.57085751642538	0.419368529159294	0.490338166682995	0.76218992069439
Merged-chr10-42761505-4	chr10	42761389	42761589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153055)	promoter-TSS (NM_153055)	-7.0	NM_001359283	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	7.69000412583982	7.77501822579788	6.8950960135029	7.14415846229385	7.67060021308652	7.89220160845258	7.77463810297295	7.1951535989602	0.308043926909655	0.228685192080158	0.537509937142616
Merged-chr12-3310051-4	chr12	3309946	3310146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016676)	promoter-TSS (NM_016676)	-77.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	8.81745971865312	8.91743069785229	8.806794173226	8.77302272042112	8.80702972794971	8.81644669803233	9.10359576855928	8.66956422783196	0.0374711155182113	0.811996630669077	0.92738007115181
Merged-chr19-46305661-4	chr19	46305571	46305771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177370)	promoter-TSS (NM_001177370)	-24.0	NM_019408	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	8.04522592299915	8.25436013631864	7.5984987263494	7.59121047298089	8.1871749587731	8.28128901744519	7.82721941767146	7.95382882618319	0.224825333347994	0.300345378616829	0.612422387893833
Merged-chr16-26041518-4	chr16	26041431	26041631	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173379, intron 1 of 14)	intron (NM_173379, intron 1 of 14)	64253.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	5.86362512742629	4.64819970022533	5.08575438046196	5.848062580762	4.36400839134303	4.69284036806266	5.06029849579013	4.97714945497775	-1.25132478811064	0.00367536641580653	0.0374529572098344
Merged-chr12-73880661-4	chr12	73880576	73880776	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20648.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	5.67195755143749	5.76797750454345	5.95483954502449	5.89111859680467	5.87107368375671	6.1281345758304	5.2497973301662	5.66894046385804	-0.0975560301237127	0.738346887602492	0.896701754212797
Merged-chr14-69732242-1	chr14	69732142	69732342	+	934.0	f0_balb.idr	promoter-TSS (NR_130166)	promoter-TSS (NR_130166)	328.0	NM_134078	105513.0	Mm.159637	NM_134078	ENSMUSG00000034190	Chmp7	4930596K11Rik|6330407G04Rik|AI450338|AW550775	charged multivesicular body protein 7	protein-coding	4.37642215906775	4.52816445553554	4.73907529388519	4.34412992685093	4.44348976441176	4.59784151025334	4.75036839054479	4.62641156470609	0.243053802962267	0.507008219733694	0.772670279459269
Merged-chr2-45096178-3	chr2	45096083	45096283	+	599.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_149354, exon 3 of 3)	non-coding (NR_149354, exon 3 of 3)	14094.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	3.22118932543175	3.19935819766985	3.16533020000644	3.21713087938979	3.19754634330877	3.153056568512	3.03484265765127	2.97882075868337	-0.409959855128168	0.463069054521718	0.744554450168099
Merged-chr2-162932042-4	chr2	162931907	162932107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026499, exon 2 of 6)	exon (NM_026499, exon 2 of 6)	499.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	5.16445480542693	5.11440222941204	5.86009492361226	5.18148805506968	5.18856232270301	5.56874380802396	5.869953518727	5.65608552772401	0.395271803998907	0.24086049511225	0.551420320401236
Merged-chr8-3330881-4	chr8	3330786	3330986	+	946.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22529.0	NM_001033378	319493.0	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	4.78547593849364	4.9454854321693	4.7465873700314	4.79893277051557	4.95630575698699	5.23654454672334	4.64220161689377	5.12341598257999	0.363629174681371	0.277383721048588	0.589510804983801
Merged-chr7-28169917-8	chr7	28169841	28170041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007991, intron 1 of 8)	CpG	193.0	NM_007991	14113.0	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	5.61594396814033	5.66163559002184	6.06919555522661	5.82137956600934	5.80936374830326	6.02707514764755	5.89044464161779	6.36524479435735	0.368606258426219	0.174035806906449	0.468303973329516
Merged-chr1-86529190-6	chr1	86529120	86529320	+	870.211121	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360831, exon 2 of 5)	exon (NM_001360831, exon 2 of 5)	2663.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	4.22537025416469	4.01173840366814	4.08805353414891	4.00655861743367	4.27006596503413	4.26092823452069	4.02179792405631	4.34761739887403	0.392254472788621	0.32879124462657	0.640144325858488
Merged-chr11-49101673-4	chr11	49101558	49101758	+	802.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12G|LTR|ERVK	12099.0	NM_146337	258334.0	Mm.390388	NM_146337	ENSMUSG00000047511	Olfr1396	MOR276-2	olfactory receptor 1396	protein-coding	4.24062892402542	4.14992929797165	4.57521641097886	3.83944482539415	4.25564391524109	4.84947574415722	4.12472093207456	4.57209382032739	0.611941190222606	0.17079638903998	0.463994222074314
Merged-chr2-79499491-4	chr2	79499398	79499598	+	838.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42862.0	NM_010894	18012.0	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Nd1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding	4.45001221001638	4.5440615521123	4.36124175439047	4.75932206683547	4.26537233596679	4.49044197412482	4.59117646014775	4.71892357935328	-0.0772225734164473	0.840001794308274	0.939166584762349
Merged-chr16-58712415-4	chr16	58712326	58712526	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6298.0	NM_001162955	71223.0	Mm.359970	NM_001162955	ENSMUSG00000047293	Gpr15	4933439K08Rik	G protein-coupled receptor 15	protein-coding	5.46846961145585	5.23925703752266	5.23727398130295	5.72506175456239	5.31844741523389	5.38025281485336	4.93017058130651	5.20146132801533	-0.41419172385914	0.189583233297092	0.488556345737121
Merged-chr5-23851401-3	chr5	23851301	23851501	+	858.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028536)	promoter-TSS (NR_028536)	804.0	NR_045040	67194.0	Mm.423733	NR_045040	ENSMUSG00000097180	2700038G22Rik	-	RIKEN cDNA 2700038G22 gene	ncRNA	3.14759935721411	3.41440431085403	3.27852374831511	2.9691313297564	3.39012356280254	3.45561213307635	3.80953231739762	3.55579232971327	1.25081076796749	0.0211018203889801	0.132657900817307
Merged-chr17-62884401-3	chr17	62884283	62884483	+	846.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3066.0	NM_010109	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	3.40429011163821	3.4427889155928	3.67949049407466	3.59317796917273	3.34544113188675	3.58091051252541	4.00370598502184	3.34056378000008	0.186826118295604	0.72641714460266	0.891061849409287
Merged-chr10-24809028-2	chr10	24808927	24809127	+	693.25	f0_c57.idr|f1_c57bl6.idr	intron (NM_134005, intron 7 of 24)	RSINE1|SINE|B4	27168.0	NM_134005	209558.0	Mm.338425	NM_134005	ENSMUSG00000019989	Enpp3	AI876438|CD203c	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding	2.87135206161111	2.73078630453209	2.80223580491558	2.99150796350264	3.42780800803766	3.04648068986155	3.21134348259905	2.99903092424808	1.32326627810578	0.0333907277566416	0.179686898842518
Merged-chr14-60990284-4	chr14	60990188	60990388	+	988.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013869, intron 5 of 9)	intron (NM_013869, intron 5 of 9)	47699.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	5.0484404880214	4.49777360429595	5.26478794113923	5.67491331611591	5.34278438429131	5.76102612974675	6.15614254852385	5.8375807341816	1.01814835930841	0.0096568803042553	0.0770159196836513
Merged-chr11-55077491-4	chr11	55077377	55077577	+	955.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177471, intron 1 of 6)	intron (NM_177471, intron 1 of 6)	654.0	NM_177471	52570.0	Mm.22361	NM_177471	ENSMUSG00000049588	Ccdc69	2210021E03Rik|D11Ertd461e	coiled-coil domain containing 69	protein-coding	5.24708385176147	4.5786211123681	4.5896143725505	4.90136515242284	4.63600745673696	4.67890844519641	4.76627928713151	4.74845272656618	-0.316540396877171	0.383742137943347	0.685515575911105
Merged-chr6-127143324-4	chr6	127143201	127143401	+	716.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009829, intron 3 of 4)	intron (NM_009829, intron 3 of 4)	-6088.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	3.87065975059301	4.10799726445167	3.82275225216746	3.38111810541615	3.74741145228184	3.46889404553647	3.80635463918148	3.82045935866138	-0.282164186556834	0.584316308572497	0.817562205564865
Merged-chr13-78163206-4	chr13	78163088	78163288	+	946.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163420, intron 8 of 8)	intron (NM_001163420, intron 8 of 8)	33261.0	NM_001347538	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	4.1161856230462	4.61549117427422	4.80204755855869	4.66077431845066	4.41686172224851	4.45404669838934	4.81093682038532	4.45888824346481	-0.0765546886007169	0.8459887702901	0.94173836727783
Merged-chr17-35861466-7	chr17	35861320	35861520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134122, exon 1 of 4)	exon (NM_134122, exon 1 of 4)	102.0	NM_134122	106582.0	Mm.390992	NM_134122	ENSMUSG00000059791	Nrm	2610307M02Rik|AI429796	nurim (nuclear envelope membrane protein)	protein-coding	6.60021513199057	6.90042959977003	6.84656115522699	6.35519019338978	6.50201020453814	6.89867587429843	6.48578029340054	6.67384073049369	-0.0532813452552713	0.822579715168911	0.932143478460956
Merged-chr4-129578728-4	chr4	129578647	129578847	+	968.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182783)	promoter-TSS (NM_182783)	-167.0	NM_182783	230766.0	Mm.20377	NM_182783	ENSMUSG00000050493	Fam167b	SEC	family with sequence similarity 167, member B	protein-coding	5.17581341807814	4.85340356948418	5.17670343645919	5.44038890549806	4.70200142692364	4.93415922155966	4.81396716118618	4.90905715810109	-0.700795316333112	0.0365381579702536	0.190224513323923
Merged-chr8-11456056-3	chr8	11455956	11456156	+	863.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	MTE2b|LTR|ERVL-MaLR	-21873.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	3.2769490925165	3.35228559648535	3.33401160896334	3.30432883618223	3.17672635266131	3.26674053701973	3.1457025517791	3.48820017117961	-0.159938143333128	0.764265408753155	0.907569734027842
Merged-chr13-111468055-2	chr13	111467955	111468155	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028487, intron 2 of 12)	L1M3|LINE|L1	22072.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	3.11175804977792	2.78440551905324	2.66221436298259	2.66127189012296	3.12923443898406	3.10970215897554	2.92703953058777	3.05489518301543	1.0775610369971	0.0828753023383134	0.312727622601856
Merged-chr7-71832340-3	chr7	71832240	71832440	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77355.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	6.61830338874636	6.27224975250932	6.05467674401185	6.72869148188453	4.73721237682532	4.54170663734927	4.95083428855465	4.83510905746903	-2.96092938112434	2.93560215091109e-19	9.08492284781307e-17
Merged-chr6-120038549-7	chr6	120038420	120038620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001199083, exon 1 of 28)	5' UTR (NM_001199083, exon 1 of 28)	135.0	NM_001185020	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	6.59925246886472	6.71579528810754	6.84198089372659	6.44278377671931	6.5028447929669	6.79157195890436	6.4178863424888	6.5312706591882	-0.120086928812065	0.58866523088954	0.819814099818031
Merged-chr1-171234399-4	chr1	171234299	171234499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010185)	promoter-TSS (NM_010185)	-50.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	6.86106727862193	6.87113395426946	6.36615623159804	6.41479810959845	6.58841601135105	6.94249778254166	6.94063089971913	7.01838099046146	0.331441701648625	0.15991488249731	0.447715346594711
Merged-chr14-118371535-3	chr14	118371432	118371632	+	899.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045624, intron 3 of 5)	intron (NR_045624, intron 3 of 5)	5654.0	NR_045624	73306.0	Mm.362328	NR_045624	ENSMUSG00000099911	1700044C05Rik	-	RIKEN cDNA 1700044C05 gene	ncRNA	4.43658503509267	4.36869073214428	4.9099196537016	4.65129413612377	3.6966731222018	3.66363776597225	3.91108715954783	3.60994990333044	-2.41991431541874	4.27990678663031e-07	1.60759622778659e-05
Merged-chr1-60566859-4	chr1	60566760	60566960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045513)	promoter-TSS (NM_001045513)	-95.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	7.40069057075236	7.68086516308677	7.28949013670493	7.60671836235596	7.13224062694636	7.33168844893089	7.53787018037613	7.01069777688918	-0.328260350109055	0.109472709592004	0.365263113300955
Merged-chr2-16183280-4	chr2	16183177	16183377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 35 of 38)	MER44D|DNA|TcMar-Tigger	-173027.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	7.07901816642095	6.94353324041206	7.30069709039521	7.01430166883876	6.78890279430711	6.75676475437487	6.52785086898772	6.80747880399181	-0.501085455076193	0.0140446091677949	0.100238768269776
Merged-chr3-79202372-4	chr3	79202267	79202467	+	763.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10552.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	3.26550262881881	3.3088925417579	2.92196901652481	3.73596753350851	3.25327112863532	3.31540539221274	3.57092638425407	3.48650486377526	0.203229681499409	0.74457682869383	0.899296531468148
Merged-chr10-99252563-4	chr10	99252453	99252653	+	909.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10678.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	4.49202187041451	4.57528994653808	4.8896992824943	5.22365021243502	4.53342414915386	4.33963359913451	4.08471496061079	4.04086148957137	-1.27177902236471	0.00332320384470483	0.0346035950488997
Merged-chr9-63757159-5	chr9	63757120	63757320	+	822.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	CpG	774.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	2.97555654573384	2.81557122318096	3.14510798551863	2.48973166676157	2.82263473541747	2.96028255084735	2.90358658690704	3.08931180038182	0.315168832101257	0.635821032615231	0.845885426792793
Merged-chr1-178338443-4	chr1	178338351	178338551	+	885.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016805)	promoter-TSS (NM_016805)	-636.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	4.25553729451495	3.78986189309368	4.13075157029049	3.71560321814473	4.22436900743239	4.11526039741467	3.9744178424372	3.83326198009363	0.192621166919	0.674113620256443	0.866008871206355
Merged-chr9-107645795-4	chr9	107645743	107645943	+	741.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10501.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	3.64387757577238	3.40759476492548	3.48562593142785	3.11327109731586	3.5002850672973	3.54460191344377	3.81132807867366	3.48370445863651	0.587978023001255	0.263355920830242	0.575347935569068
Merged-chr2-176708165-4	chr2	176708051	176708251	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099327)	promoter-TSS (NM_001099327)	-202.0	NM_001099327	100043387.0	Mm.444048	NM_001099327	ENSMUSG00000078878	Gm14305	-	predicted gene 14305	protein-coding	4.791269151624	5.00919772275895	5.60072052929905	4.16987943251188	4.37617043178752	4.7248100955324	4.84152270890886	4.67034023102517	-0.665319824336369	0.140895072253049	0.417494563733161
Merged-chr7-118764159-4	chr7	118764069	118764269	+	987.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 8 of 30)	RMER19B|LTR|ERVK	23898.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	5.72780534340738	5.86971395294855	5.70582022047778	5.83890199385112	4.8384203536323	5.27146940687658	5.27195809713433	5.04898339686089	-1.22204671818341	2.59888712949593e-05	0.000641422284987484
Merged-chr5-25100851-4	chr5	25100751	25100951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027851)	promoter-TSS (NR_027851)	-124.0	NR_027851	67261.0	Mm.461781	NM_026059	ENSMUSG00000043833	2900005J15Rik	-	RIKEN cDNA 2900005J15 gene	ncRNA	5.71591506029774	5.79145207131948	6.11878310594684	5.70831499177895	4.64101400670253	5.34287333787282	5.33697466381236	5.53507615329325	-1.03478155427838	0.00182601563851355	0.0217857806124298
Merged-chr16-33770085-4	chr16	33770012	33770212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23925.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	5.93429587099032	6.07109522268744	6.14512283530881	5.84498344938643	5.77203662690095	6.13340903826399	6.16997632663244	5.95371613137863	0.0206789534387315	0.934349359429472	0.976356212091203
Merged-chr7-31127584-3	chr7	31127485	31127685	+	803.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011322)	promoter-TSS (NM_011322)	-562.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	3.39286675952353	3.71469247248312	3.27665223238522	3.23352095706737	3.3263729465912	3.45025895585254	3.13887952258139	3.44599082029741	-0.245536725897022	0.654153755727561	0.855494702609588
Merged-chr12-51593552-2	chr12	51593452	51593652	+	972.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007728, exon 1 of 11)	5' UTR (NM_007728, exon 1 of 11)	211.0	NM_001198835	12810.0	Mm.21325	NM_007728	ENSMUSG00000020953	Coch	AW122937|Coch-5B2|D12H14S564E	cochlin	protein-coding	3.00938004342375	3.01317200119895	3.23292798751524	3.07181178972118	2.87933695390414	2.91929061879235	3.16762272139547	2.88054677001008	-0.497685166703428	0.4018336222849	0.699369523452011
Merged-chr11-58302416-8	chr11	58302331	58302531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4638.0	NM_182996	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	5.57021001930703	5.54701283215475	5.22265770342204	5.36487600444856	5.49586547747779	5.18559775962117	5.29288187199629	5.68796496751129	0.0075987816748912	0.979356131752527	0.99269129061727
Merged-chr4-101675846-4	chr4	101675754	101675954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28071.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	5.71360431366669	5.84976483907846	6.04209513957751	6.33342998070854	5.97095193364603	5.83802537735953	5.73772800041579	6.05819276034374	-0.185543730881803	0.495878558088537	0.766025331518119
Merged-chr10-118882740-4	chr10	118882639	118882839	+	872.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13836.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	4.39796360221857	4.37587874744678	4.54917244879337	3.88145220457553	4.31324494057974	4.4878574473262	4.01439288742657	3.79832979600721	-0.328496731807775	0.480654572013384	0.756060899899244
Merged-chr6-108558069-2	chr6	108557969	108558169	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	65098.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	3.39911228884909	3.22044985532522	3.34676066353797	2.90164114185335	3.47936946202115	3.28645940544302	3.27863112533292	2.97370508967729	0.179113826329818	0.762975732438504	0.907020453599003
Merged-chr11-65784557-4	chr11	65784446	65784646	+	902.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316368, intron 1 of 10)	intron (NM_001316368, intron 1 of 10)	3813.0	NM_009157	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	4.6841743493005	4.57645679216102	4.19378185137978	4.42531916375837	4.48046751456771	4.57130170072661	4.8017173241796	4.91777413303206	0.480799319848275	0.198721853797804	0.500365164366404
Merged-chr16-55951734-4	chr16	55951691	55951891	+	970.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14484.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	4.48360103632531	4.42668957067836	4.4843230425161	4.21240123248959	4.4524161084113	4.48901607116698	4.29708897681485	4.1203983574105	-0.100804694313022	0.79539072732411	0.920870471376103
Merged-chr15-73017829-4	chr15	73017731	73017931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029640, intron 6 of 21)	intron (NM_029640, intron 6 of 21)	37981.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	6.39309329522947	6.70416680595974	6.20648374006394	5.94966229640011	6.6462271775262	6.92987236171014	6.06972233250889	5.77404837777572	0.143953646090678	0.655959756366207	0.856408949144156
Merged-chr18-34928148-2	chr18	34928048	34928248	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144866, intron 2 of 10)	intron (NM_144866, intron 2 of 10)	3855.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	2.83233085824415	2.6213088169302	2.77746674584853	2.50474752028604	2.47318327368554	2.5622556013446	2.45159205191154	2.45738247997764	-1.07459856556867	0.128668283512175	0.399114470393214
Merged-chr12-55836775-4	chr12	55836677	55836877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155205, intron 1 of 10)	CpG	411.0	NR_155205	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	5.70417028040519	5.31804946844375	6.110787544433	5.7818335127788	5.38562601732031	5.32233330513157	5.32083341131331	5.49323083864501	-0.639074469754695	0.0329925515586953	0.178263759061306
Merged-chr10-127211153-2	chr10	127211053	127211253	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359280, intron 1 of 10)	intron (NM_001359280, intron 1 of 10)	469.0	NM_054097	117150.0	Mm.22682	NM_054097	ENSMUSG00000025417	Pip4k2c	Pip5k2c	phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	protein-coding	3.6683532838795	3.43543784630202	3.66889265948381	3.34219929351687	3.55303874187176	3.44886813622447	3.32537999679066	3.84569874550814	0.107900820585719	0.83558293191118	0.937473068238396
Merged-chr11-105978795-3	chr11	105978671	105978871	+	925.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281819, intron 15 of 23)	intron (NM_001281819, intron 15 of 23)	3563.0	NM_009598	11421.0	Mm.754	NM_009598	ENSMUSG00000020681	Ace	AW208573|CD143	angiotensin I converting enzyme (peptidyl-dipeptidase A) 1	protein-coding	3.6811995144542	3.70909518965691	3.62984270573242	3.71999352399168	3.32767240944414	3.6352236001854	3.71571865384378	3.57384236658853	-0.399344977283494	0.412184869831624	0.707394257928814
Merged-chr7-67223233-2	chr7	67223133	67223333	+	635.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131044)	promoter-TSS (NR_131044)	617.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	3.13692570871881	3.2301638101928	3.3078483602586	3.10997819234472	3.16649159897685	3.11863797636657	3.06495581437827	3.35802151546967	-0.0446376242311509	0.935413970426058	0.976559562935705
Merged-chr5-5809453-4	chr5	5809359	5809559	+	983.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60142.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	4.7779057006116	5.47426290583768	5.39563640876954	5.36461550989017	4.95309913209857	5.36365129879675	5.06497547649095	5.30765316348483	-0.206718247020113	0.533026821834168	0.788419353961478
Merged-chr19-55581049-4	chr19	55580935	55581135	+	868.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	121169.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	4.30131176928211	4.24784629944221	4.89155521321188	4.68155185429484	4.04772431987455	4.22692730274091	4.37261659710209	4.62799392324055	-0.530316256502155	0.211078539028965	0.515716175112166
Merged-chr5-90881122-2	chr5	90881022	90881222	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10123.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	3.81407806021391	3.56804085748223	3.56714711724252	3.02643549616544	3.39993825211655	3.84296198251391	3.55241524831614	3.50945424951844	0.206839274025786	0.71295934483257	0.885140027660117
Merged-chr11-34771828-4	chr11	34771739	34771939	+	921.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	12066.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	4.49712954868289	4.19496514202983	3.72635411829983	4.22475102888344	4.06865778514355	4.1961920432189	4.28254958837957	4.45813420969374	0.161474231727467	0.713714362489373	0.885468561919243
Merged-chr5-34761692-4	chr5	34761603	34761803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010414)	promoter-TSS (NM_010414)	-37.0	NM_010414	15194.0	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	7.99717217254081	8.22776650859884	8.2069491651722	8.09931144441457	7.66416003954749	7.64393486533728	7.92640273730641	7.45039698530493	-0.586964904342998	0.000953807810091215	0.0129637361303194
Merged-chr7-4657003-2	chr7	4656903	4657103	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172894, intron 1 of 23)	intron (NM_172894, intron 1 of 23)	1947.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	3.14560586636043	3.38743725313592	3.4331700476252	3.02914043838943	3.29425333681961	3.43991776634083	3.25629550169674	3.26684261885806	0.239537441718233	0.661862000053107	0.85960542472001
Merged-chr15-53416450-4	chr15	53416323	53416523	+	975.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-70240.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	5.24287872686242	4.64433433510717	4.89347293058919	5.15576829221969	5.19249713483908	4.87355733685554	4.97481376969077	4.7345972468257	-0.0893096712831526	0.798270831392149	0.921955533143952
Merged-chr3-19628746-4	chr3	19628638	19628838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15722.0	NM_001081281	381485.0	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	8.02317885128143	8.28203271969161	8.51289615423784	7.98940357584101	8.52125289875815	8.47023062961539	8.19042022409184	8.28139734631332	0.204217732425292	0.275387901760762	0.587162576666346
Merged-chr13-67780154-4	chr13	67780051	67780251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028402, intron 1 of 3)	intron (NM_028402, intron 1 of 3)	458.0	NM_028402	72958.0	Mm.53849	NM_028402	ENSMUSG00000090659	Zfp493	2900054J07Rik|Rslcan12	zinc finger protein 493	protein-coding	5.4359061157668	6.02779694311672	5.40331922341298	5.41926989490043	6.36355167435309	6.31047603306355	6.2137523802504	6.22384718206633	1.08231739722176	6.04160922643799e-05	0.0013276804665904
Merged-chr11-108445472-4	chr11	108445354	108445554	+	928.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029606, intron 5 of 27)	intron (NM_029606, intron 5 of 27)	20188.0	NM_029606	76380.0	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	4.56616007600645	4.77215460130353	4.68983473868654	4.62577105995284	4.67547604291649	4.69943740593623	4.94489342119962	4.8340657014364	0.264054948661553	0.433138752266083	0.722823160126704
Merged-chr10-37146213-4	chr10	37146125	37146325	+	782.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7299.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	4.10484121765433	4.23600629972951	4.23781540026475	4.29852105169399	4.17802067370541	3.85019397286773	3.99238431311184	3.95554148919842	-0.564803704872822	0.177979896150772	0.47379644735344
Merged-chr15-7941797-3	chr15	7941778	7941978	+	752.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081402, intron 10 of 17)	intron (NM_001081402, intron 10 of 17)	126328.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	3.19494791868661	2.92457611447817	3.19535845745484	3.25484641301771	3.22586529184037	3.30649627775294	3.18348625305614	3.19369811287979	0.278876540066922	0.615071461636539	0.834271521286409
Merged-chr19-41830917-2	chr19	41830817	41831017	+	608.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008043, exon 1 of 1)	exon (NM_008043, exon 1 of 1)	947.0	NM_008043	14296.0	Mm.4573	NM_008043	ENSMUSG00000067199	Frat1	AW060382	frequently rearranged in advanced T cell lymphomas	protein-coding	3.36233778941868	3.47863877448312	3.52725663463289	3.165472398476	3.28680307944513	3.4169017820826	3.40656754397551	3.6239600959237	0.192171343247442	0.714766229704413	0.886003030420421
Merged-chr15-31601003-2	chr15	31600903	31601103	+	991.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_007637, intron 1 of 10)	intron (NM_007637, intron 1 of 10)	536.0	NM_001348035	12465.0	Mm.282158	NM_007637	ENSMUSG00000022234	Cct5	CCT-epsilon|Ccte|TCP-1-epsilon|TCPE|mKIAA0098	chaperonin containing Tcp1, subunit 5 (epsilon)	protein-coding	2.75286117597711	2.71362158407433	2.75320605416269	2.55903172538516	2.67475878529662	2.6585753911385	2.68129610772383	2.81165918631643	0.0898420243305968	0.888234507805339	0.958102096365945
Merged-chr5-137533197-4	chr5	137533084	137533284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010312, exon 1 of 10)	5' UTR (NM_010312, exon 1 of 10)	122.0	NM_010312	14693.0	Mm.30141	NM_010312	ENSMUSG00000029713	Gnb2	Gnb-2	guanine nucleotide binding protein (G protein), beta 2	protein-coding	5.67762094574717	5.64886444188219	5.70369174435168	5.32890294768927	5.73363716603106	6.0392462199644	5.51736570840345	5.67459209100485	0.285423243943951	0.308275955937861	0.620682143104779
Merged-chr10-62217447-4	chr10	62217344	62217544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	intron (NM_197996, intron 1 of 7)	13774.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	4.93454619527539	5.33659556697922	5.0409850256649	5.04491493241512	5.08489860275216	5.34109511759216	4.98251838262573	4.60002366378179	-0.134213194487417	0.694107329674528	0.87574740044461
Merged-chr11-72441290-4	chr11	72441207	72441407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016776)	promoter-TSS (NM_016776)	-20.0	NM_016776	18432.0	Mm.147946	NM_016776	ENSMUSG00000040463	Mybbp1a	AL024407|AU019902|P160|p160MBP|p67MBP	MYB binding protein (P160) 1a	protein-coding	6.59133257605512	6.27920225972825	5.52389357813908	6.15677855904484	6.231778351089	6.3833215155476	6.55868756123452	6.05753277073583	0.192327582393397	0.509757707057119	0.774191730441861
Merged-chr11-78323135-4	chr11	78323105	78323305	+	929.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009657)	promoter-TSS (NM_009657)	132.0	NM_001303423	11676.0	Mm.7729	NM_009657	ENSMUSG00000017390	Aldoc	AI847350|AU040929|Aldo3|Scrg2	aldolase C, fructose-bisphosphate	protein-coding	3.78471148423868	4.23430081000162	3.73022130422897	3.27662910177291	3.95886444708981	4.06190661622821	3.76970115046647	3.98229362213322	0.410719283867047	0.429472800989359	0.720390295615854
Merged-chr5-138619751-4	chr5	138619664	138619864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001044747)	promoter-TSS (NM_001044747)	-21.0	NM_001044747	24135.0	Mm.27575	NM_013844	ENSMUSG00000058291	Zfp68	KRAB3|KRAZ2|Zfp70|mszf22|mszf49	zinc finger protein 68	protein-coding	7.45631160725573	7.30105720428082	7.40970404044808	7.41309157435096	7.39111112858429	7.42012273517142	7.68821637520648	7.14643890101392	0.0398586566715754	0.83447148608953	0.936888323107459
Merged-chr1-120969701-4	chr1	120969607	120969807	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117698.0	NR_038008	98452.0	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	4.98432613594109	4.97966870605956	4.55484220521451	5.66280256751902	5.31646192133016	4.92563089695543	5.55936500264499	5.18509108408536	0.249798439894994	0.53037010540734	0.786525451847713
Merged-chr9-120586746-4	chr9	120586664	120586864	+	777.520874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9433.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	4.44074048113743	4.8447470221335	4.3080158763903	4.06474316415389	4.40447629477804	4.5288441582415	4.2891007960487	4.5970932404778	0.044416945227341	0.914888188739415	0.968339425818332
Merged-chr16-65406129-4	chr16	65406092	65406292	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114437.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	5.52177357848697	4.46576866364159	4.89772393485864	5.32530618953612	4.62338384821446	4.66886882172652	4.6025714419779	4.57668999651863	-1.0157771417195	0.0103512571364332	0.0809350574964873
Merged-chr13-55693015-4	chr13	55692883	55693083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181278)	promoter-TSS (NM_181278)	-141.0	NM_181278	78521.0	Mm.28449	NM_181278	ENSMUSG00000045767	B230219D22Rik	AA119856|D530037I19Rik	RIKEN cDNA B230219D22 gene	protein-coding	7.09968200097014	7.40390239163623	6.64986734746278	6.60406039037165	7.04777815441962	7.2424758339373	6.78414582440876	6.95002362334183	0.0529346726063808	0.83355855538302	0.936365732465896
Merged-chr2-157133906-4	chr2	157133805	157134005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139520, intron 1 of 16)	BC1_Mm|scRNA|scRNA	1317.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	5.69472499017511	5.66944857827857	6.16351125779806	5.87431525587647	5.47929709095363	5.70849358716106	5.66690693576818	5.8824603699505	-0.295591424923418	0.279877142139112	0.591929276817972
Merged-chr1-91056623-4	chr1	91056542	91056742	+	809.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	3198.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	3.83766571523603	4.21847858509031	3.89663947897307	4.06984759054624	4.59727351200727	4.46022316542706	4.04127101387896	4.36916256466029	0.905086389807255	0.0330363906342723	0.178319348521792
Merged-chr6-52486786-3	chr6	52486708	52486908	+	725.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5643.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	3.3894405863873	3.4169302346036	3.13742888401845	3.92084446473524	3.54413537095659	3.38119130871878	3.31947333035705	3.44420640946298	-0.294673942868211	0.611855215792053	0.832608301085181
Merged-chr8-22814456-4	chr8	22814359	22814559	+	872.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8805.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	4.45450426904022	4.32520834893913	4.11603117061727	4.05775749006976	4.03899492724879	4.24132208413879	4.14563321274268	4.2070892940998	-0.207934932632661	0.611313296252964	0.832251855180034
Merged-chr9-57879384-4	chr9	57879299	57879499	+	926.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31587.0	NM_027086	69459.0	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	4.54480689395021	4.39638581976442	4.89616869619897	4.60202140113065	5.24081436137196	4.96272682855345	4.65154326996362	4.85833578910335	0.695537026077176	0.053567181093768	0.241590069220998
Merged-chr9-21125729-5	chr9	21125659	21125859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205312, intron 3 of 24)	ID_B1|SINE|B4	5516.0	NM_018793	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	5.70225200846642	5.81634902994218	5.57779577116273	5.74187701650796	5.38532179515273	5.32197927666231	5.32057550188921	5.54722861008201	-0.549644528885568	0.0410026922380531	0.204780425962138
Merged-chr10-118883530-4	chr10	118883470	118883670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-14667.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	7.50426137895292	8.03938153723652	7.59401461313036	6.35565812417476	7.78530416871776	7.93919476851873	7.40264510896711	6.93068608041571	0.0774817686358615	0.880088472126104	0.955083490960425
Merged-chr9-44084857-4	chr9	44084768	44084968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198091)	promoter-TSS (NM_198091)	-52.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	7.4933751989229	7.80599820022104	7.77612193074814	7.75814518593599	7.60240639317706	7.55198072921671	7.86149597246675	7.4207240876729	-0.128255915309586	0.48792610103661	0.76110740386327
Merged-chr7-45053836-2	chr7	45053739	45053939	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175022)	promoter-TSS (NM_175022)	-958.0	NM_175022	233210.0	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	4.69171013699917	4.77279093148316	4.55617135479751	4.69826796066169	5.31223397236777	5.17322005985219	5.00801977003679	5.49500188721605	1.11977205008188	0.000505217401863907	0.00777868688022302
Merged-chr2-90903670-3	chr2	90903578	90903778	+	765.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026688, intron 2 of 6)	intron (NM_026688, intron 2 of 6)	1043.0	NM_026688	68349.0	Mm.30113	NM_026688	ENSMUSG00000005510	Ndufs3	0610010M09Rik|CI-30kD	NADH dehydrogenase (ubiquinone) Fe-S protein 3	protein-coding	4.0670021297927	3.55496021914699	3.98281038842326	4.08806941437238	3.7124860277794	3.80641834202094	3.43451581957694	3.62909587671156	-0.861944183854159	0.0821738227412102	0.311235594577587
Merged-chr11-3175756-4	chr11	3175593	3175793	+	983.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 6 of 32)	B2_Mm1t|SINE|B2	17770.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	4.27805191488208	4.3681465615217	4.81584139711731	3.51035287403188	2.93476205691494	3.39991588923691	3.10119385476868	3.10929925183486	-4.74373438981133	4.98124593530112e-08	2.27866391021079e-06
Merged-chr19-6085729-4	chr19	6085624	6085824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024231)	promoter-TSS (NM_024231)	627.0	NM_026410	67849.0	Mm.23526	NM_026410	ENSMUSG00000024791	Cdca5	2610036L13Rik|AL024086|AW536684|C85404	cell division cycle associated 5	protein-coding	6.7092284553075	6.37902805330368	6.09549468238276	5.99712962083863	6.61335467455488	6.60778583877838	6.86794639507897	6.27981363561483	0.435117754869725	0.0975462688434033	0.342253480558159
Merged-chr9-21030328-4	chr9	21030218	21030418	+	868.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023892, intron 2 of 2)	intron (NM_023892, intron 2 of 2)	945.0	NM_023892	78369.0	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	4.01169460291961	3.84054006140052	3.42380918392309	3.28643991558863	3.94847383731354	3.7894758282408	3.81108395360932	3.96607122507649	0.634811629662763	0.21540396975437	0.521575696120095
Merged-chr13-49102390-3	chr13	49102301	49102501	+	789.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 3 of 29)	RMER16_Mm|LTR|ERVK	45927.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	3.70616429792711	3.60752907807764	3.85411752080763	3.34578872383507	3.54272711133409	4.11086491496738	3.33975789727183	3.75546410451283	0.245772084314401	0.644856145181606	0.850540242207308
Merged-chr8-4105843-2	chr8	4105734	4105934	+	662.583374	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_026956)	promoter-TSS (NM_026956)	-70.0	NM_026956	69142.0	Mm.171061	NM_026956	ENSMUSG00000051906	Cd209f	1810029C22Rik|AI647041|SIGNR8	CD209f antigen	protein-coding	3.55739694464769	3.48652447523063	3.51078920036498	3.41957367291783	2.82816051699078	3.16563417054464	2.97522753766883	3.05244651285199	-2.04636438848696	0.000832019916241214	0.0116099481705809
Merged-chr9-88548158-5	chr9	88548095	88548295	+	905.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001142943, exon 1 of 6)	5' UTR (NM_001142943, exon 1 of 6)	175.0	NM_001142943	71640.0	Mm.259988	NM_001142943	ENSMUSG00000032425	Zfp949	4930422I07Rik|Nczf	zinc finger protein 949	protein-coding	4.2355949363431	4.15716311717392	4.11345653126613	3.83146882666455	3.96436809427646	3.76571706116029	3.9589882558331	3.8197932123935	-0.545867936272519	0.222544104506926	0.530621200281373
Merged-chr6-85402937-4	chr6	85402842	85403042	+	840.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20944.0	NM_001007472	384452.0	Mm.347883	NM_001007472	ENSMUSG00000068302	Noto	Flh|MmNot|Not|tc	notochord homeobox	protein-coding	3.82981708237492	3.99179693088498	4.24826948416375	4.30245411517217	4.06812277040264	3.6414182454232	4.22836015822574	3.65300797171694	-0.492528736004219	0.310817098320719	0.622903123613211
Merged-chr3-85574039-4	chr3	85573944	85574144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144896)	promoter-TSS (NM_144896)	-85.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	8.31498390458157	8.6361839729504	8.31065322771742	8.57684726744768	8.3040245324769	8.57625616157072	8.6165399903827	8.43470316889117	0.0145545518495843	0.9313934254569	0.975279137937273
Merged-chr5-65515050-4	chr5	65514878	65515078	+	865.261902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22143.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	3.39896720812154	3.51276159880473	3.27841737380447	3.65613643066964	3.25444427603204	3.62569034822807	3.5965409948227	3.33864873282869	-0.0747026408164119	0.888242307943246	0.958102096365945
Merged-chr16-5202809-4	chr16	5202718	5202918	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027804, intron 1 of 8)	intron (NR_027804, intron 1 of 8)	1194.0	NM_013796	27426.0	Mm.215641	NM_013796	ENSMUSG00000023143	Nagpa	AI596180|UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	protein-coding	5.12944065175258	5.60940675588604	5.06091604335497	4.76505470009835	5.31060521673955	5.40226608576204	5.47938465947362	5.0574906559736	0.277956089035021	0.418674233511859	0.712018284205586
Merged-chr1-111864937-4	chr1	111864824	111865024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081316)	promoter-TSS (NM_001081316)	-6.0	NM_001081316	319901.0	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	8.21320241392474	8.27167978927301	8.83085445605782	8.81993561857617	8.07729954100342	7.98164461116654	8.54353281016669	8.08882273260161	-0.47913726020147	0.0282443457775491	0.16093534166668
Merged-chr17-48316124-4	chr17	48316040	48316240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177083)	promoter-TSS (NM_177083)	-22.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	5.80975870317979	5.75388649444415	5.31057578770082	5.66447302071877	5.7439297192311	5.52320761145657	5.80378496601018	5.93722150578537	0.182923505225603	0.503393682787008	0.770378167467835
Merged-chr2-53200706-4	chr2	53200594	53200794	+	952.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022989, intron 2 of 3)	intron (NM_022989, intron 2 of 3)	8610.0	NM_022989	65103.0	Mm.37623	NM_022989	ENSMUSG00000026960	Arl6ip6	2310057C01Rik|2610529A11Rik|Aip-6	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding	4.89806286950447	4.5851054115741	4.72650911907628	4.4957212904459	4.56052432787446	4.70194298751617	4.62871492754375	4.64737168033034	-0.0827329620412946	0.814734280158826	0.928495490208222
Merged-chr17-24205584-4	chr17	24205486	24205686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173186)	promoter-TSS (NM_173186)	-24.0	NM_001163850	224617.0	Mm.301585	NM_173186	ENSMUSG00000036473	Tbc1d24	9630033P11|C530046L02Rik|mKIAA1171	TBC1 domain family, member 24	protein-coding	6.62921426826941	6.41086010855782	5.96902506993589	6.11957362033221	6.78028907498311	6.54623607283837	6.56686000176846	6.3286286004533	0.402333310397771	0.107384430719717	0.361429751948116
Merged-chr6-34878175-4	chr6	34878073	34878273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347101)	promoter-TSS (NM_001347101)	-108.0	NM_001135611	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	8.44198593738434	8.70707370877177	8.61262590772778	8.65835488251663	8.4217153033725	8.6159139284295	8.66030757780424	8.35213371044198	-0.119309474712614	0.45479458382285	0.73853646176365
Merged-chr10-79986274-8	chr10	79986151	79986351	+	916.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	B1_Mur3|SINE|Alu	-1991.0	NM_001003949	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	3.55377382946405	3.82140832883599	3.55423765741283	3.67381909693275	3.52470143517261	3.67207626634566	3.42048901695378	4.18274446970613	0.226963119627001	0.661855709609326	0.85960542472001
Merged-chr7-142449357-4	chr7	142449257	142449457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	6889.0	NM_009405	21953.0	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	5.56849027518474	5.85994209824865	5.6013134134773	5.42017567435733	6.6012602560416	6.86257253354526	6.63884465487533	7.0224768188368	1.78492438758565	2.92781463231173e-13	3.47911381825237e-11
Merged-chr3-9647205-4	chr3	9647111	9647311	+	883.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-37126.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	4.45776815656011	4.60060606334397	4.57832857566739	4.73874291352918	4.15616442746272	4.3059659538403	4.5939792288591	4.27637077955331	-0.626247899372332	0.100710948894323	0.348391554789513
Merged-chr8-88651377-4	chr8	88651273	88651473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 1 of 12)	MTB|LTR|ERVL-MaLR	4026.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	7.83810293911308	7.89885917188926	7.39986733600604	6.80297056142223	7.64512050266596	7.52679197578551	7.31253011319508	7.1055465254997	-0.176614903552	0.512992788049998	0.776079955542303
Merged-chr15-80026389-1	chr15	80026289	80026489	+	566.0	f0_balb.idr	Intergenic	Intergenic	-11581.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	3.5524992643932	3.23089216025455	3.3677697585653	3.21756926196567	2.87229774645376	2.9248172913523	2.88157193260782	2.95852049984171	-1.88258388273765	0.00263565605575455	0.0288840384648026
Merged-chr13-41437586-3	chr13	41437489	41437689	+	969.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	49771.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	3.85334013751694	4.19344471437789	4.14997312996481	4.07164552785643	3.60643975345793	4.40369552594358	4.08680244324229	3.90588448332252	-0.129922894088172	0.78223177737158	0.915282674933122
Merged-chr17-33818205-2	chr17	33818079	33818279	+	1000.0	f0_balb.idr|f1_balb.idr	exon (NM_030697, exon 3 of 11)	exon (NM_030697, exon 3 of 11)	6383.0	NM_016844	54127.0	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	4.55525804482187	4.28809074166496	4.30431881517536	4.67021968953642	4.28858387012638	4.33492906695153	4.41624093859615	4.55300836126856	-0.186794424701273	0.627695196641585	0.841282116569049
Merged-chr19-10843682-4	chr19	10843561	10843761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023044, intron 1 of 7)	MIR3|SINE|MIR	1117.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	5.02754743419639	5.00849942341506	4.99322778401737	4.88559747911738	5.17930481309147	4.98018846805923	5.10320207178112	5.53131154409875	0.462984682764098	0.139936649560313	0.415958856554476
Merged-chr6-89421720-4	chr6	89421628	89421828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-59115.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	7.16511721513868	7.69775580043348	7.25806326870895	7.38839352578219	7.49543957758146	7.40190282017535	7.56635668513519	7.37906854156261	0.0885187930090473	0.650002840206614	0.853021044216188
Merged-chr10-9717183-4	chr10	9717077	9717277	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32455.0	NR_038036	620417.0	Mm.378085	NR_038036	ENSMUSG00000111901	Gm6150	-	predicted gene 6150	ncRNA	5.59616820082609	6.06931601734803	6.1289696620461	5.77386264468361	5.51891095724448	5.66013928717636	5.90349750132037	5.13581129361679	-0.535182770660076	0.0770142031231744	0.300004021432683
Merged-chr6-37097590-1	chr6	37097490	37097690	+	677.5	f0_balb.idr	exon (NM_001081206, exon 4 of 34)	exon (NM_001081206, exon 4 of 34)	202386.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	3.75219056119493	3.746620569609	3.80433535656605	4.23608174415217	3.60571189464771	3.57426966543311	3.93031617469223	3.75061016393883	-0.579591990949471	0.238560719210188	0.548947761743878
Merged-chr3-148279216-1	chr3	148279116	148279316	+	663.5	f0_balb.idr	Intergenic	Intergenic	675419.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	3.57461267306549	3.19046259871277	3.47180350075511	3.48836288023636	3.10416614667313	3.13993378044131	3.74160328367938	3.52244611810225	-0.120398426577774	0.833886291036435	0.936577740653464
Merged-chr11-17008693-4	chr11	17008604	17008804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019549)	promoter-TSS (NM_019549)	14.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	8.08166979992246	8.38653359418986	8.10884509650461	7.96621509715313	8.3572406262112	8.36703083785054	8.32867495119446	7.88003546419974	0.137578510932129	0.464949095927972	0.745710042790831
Merged-chr9-111295565-3	chr9	111295471	111295671	+	868.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-16168.0	NM_001164659	320429.0	Mm.270754	NM_001164659	ENSMUSG00000062296	Trank1	A230061D21Rik|C030048J01Rik|Gm187|Lba1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding	3.39618073444346	3.33424743208443	3.33244268870324	3.02343851506018	3.66750538337307	3.85062658111048	4.01027620508023	3.72574030533229	1.84309421742878	0.000276613073747966	0.00474663499910957
Merged-chr18-82534591-4	chr18	82534478	82534678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 3 of 3)	intron (NM_001025245, intron 3 of 3)	-19885.0	NM_001025258	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	5.98852048189434	5.88961278512258	6.0708711392103	6.16888666277705	5.51268269933176	5.9358093962253	5.67958064903498	5.65087195011883	-0.565669365967247	0.0278753469338966	0.159612204923806
Merged-chr2-30624092-4	chr2	30624001	30624201	+	836.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29057.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	3.7028543032386	4.07592934039791	3.75702856926467	3.91238866788913	3.85712569018437	3.57898578623272	3.97810959824755	3.58711444293048	-0.313164603570614	0.51058587494008	0.774867939359323
Merged-chr9-64790844-4	chr9	64790743	64790943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-20168.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	7.05389820039626	6.89758128084333	6.54636487696661	6.67383257761934	6.65840524836997	6.61832300084049	6.8891710494359	6.60771063827565	-0.147457787261337	0.501562503834964	0.769279379858406
Merged-chr3-138742229-4	chr3	138742102	138742302	+	858.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019571)	promoter-TSS (NM_019571)	-6.0	NR_121195	56224.0	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	4.1218263367715	3.83076700858349	4.07834610193586	3.9750526944398	3.97269746257878	3.95101721610592	4.14613897801444	3.8821621215254	-0.0260504075955221	0.951190916203037	0.982596340189481
Merged-chr17-44029821-4	chr17	44029730	44029930	+	943.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357742, intron 4 of 4)	intron (NM_001357742, intron 4 of 4)	-48972.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	5.51564179107254	5.54307084855629	5.13770402430192	5.32692624814925	4.77963382591173	4.73338753845466	4.37243994099	4.92918027959349	-1.30366390941532	0.000140298352643569	0.00269826977649733
Merged-chr17-84180916-5	chr17	84180772	84180972	+	863.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7075.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	3.30754826899937	3.03434082989759	3.00837728350092	3.02860597271681	3.36591054067015	3.30824712634147	3.24060861819817	3.19462180433326	0.715137477834876	0.190487381335209	0.489731319658269
Merged-chr6-57824579-4	chr6	57824490	57824690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	CpG	535.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	6.3844934680191	6.31685129388416	6.92115115624983	6.45316691910788	6.24327239871619	6.28240030042523	6.66891926479755	6.45126124742805	-0.171166106001948	0.489402952803878	0.76169179992188
Merged-chr2-160598065-4	chr2	160597969	160598169	+	899.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47828.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	4.06742402641179	4.45760248878749	3.95472214104204	4.52411528574096	4.41156598721316	4.61436735345587	4.29608575302423	4.62942794971601	0.462940354651562	0.2709391476248	0.582721788450994
Merged-chr6-38360243-4	chr6	38360127	38360327	+	930.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5624.0	NM_028864	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	4.24979205960411	4.08008643065051	4.25043053108027	4.29932692715238	4.59929580773651	4.46880253301163	4.55554799626838	4.20046292443082	0.573903949168072	0.136405472121551	0.41091739052877
Merged-chr16-90744715-3	chr16	90744562	90744762	+	574.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029844, intron 1 of 2)	intron (NM_029844, intron 1 of 2)	6338.0	NM_029844	77037.0	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|C21ORF61|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	3.01940422284146	2.86536133114542	3.07607768053959	3.05543699777496	2.87077310837853	2.9395685763639	2.88937832034171	2.95928510972884	-0.415842623940079	0.481862738982101	0.756857948205431
Merged-chr16-64754906-2	chr16	64754806	64755006	+	788.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16033.0	NM_026273	67609.0	Mm.212157	NM_026273	ENSMUSG00000059920	4930453N24Rik	AI649104|din	RIKEN cDNA 4930453N24 gene	protein-coding	2.90720914249084	2.96178504944686	2.55783748615538	2.80383241035848	2.85405818620872	3.01632683884541	3.01299215901271	3.02343036273159	0.693948992137853	0.268231160518518	0.580076430005696
Merged-chr4-142098525-4	chr4	142098438	142098638	+	990.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14234.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	5.12471680562065	5.00607396379844	4.71414407295091	5.08799450588258	5.37605439010631	5.29817494217083	5.00148815502355	5.05647909436906	0.375407927684753	0.239770742230609	0.550270567829518
Merged-chr14-106193336-3	chr14	106193236	106193436	+	890.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	87138.0	NR_073203	212085.0	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	3.20233029883208	3.34854498976878	3.20276662709549	3.05895666671379	2.9487145200545	3.06618930864776	3.24411573339869	2.88702429484837	-0.652369034109969	0.266687951066193	0.578349328771572
Merged-chr6-117906779-4	chr6	117906689	117906889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166431)	promoter-TSS (NM_001166431)	7.0	NM_133834	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	8.58967989179699	8.85217665122718	8.7126033115813	8.53914261540328	8.79222399084198	8.83342466349202	8.9823152638161	8.65003456064403	0.178840695627496	0.2625230871942	0.5743040484186
Merged-chr1-89552649-4	chr1	89552560	89552760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	97849.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	6.83660075323961	7.17852549340516	7.26283372120046	7.12883684953815	6.704540051673	6.64366854915877	7.13333635960342	6.63564071021855	-0.441467863678702	0.044283672185213	0.214668536613884
Merged-chr10-37364690-4	chr10	37364585	37364785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-225759.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	6.20783590392117	6.24843417909868	6.14976087888605	6.4795135257159	5.80334224098301	6.3647955656451	6.09805112443224	6.04020429384851	-0.323659523766691	0.196232347491283	0.497236651745317
Merged-chr2-120424499-3	chr2	120424350	120424550	+	963.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172672, intron 6 of 23)	intron (NM_172672, intron 6 of 23)	-20334.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	4.42665210810173	3.64514745097218	4.16694705936609	4.06027090098225	3.64628632881953	3.72513291962652	3.76864347665528	3.98705020828965	-0.878425483488645	0.070539847734977	0.28469911249716
Merged-chr7-35123400-6	chr7	35123218	35123418	+	844.3541869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4025.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	3.72710585888431	3.14123203091141	3.14191826021684	3.14463011646537	3.0705225962913	3.12304572213069	3.00248124940127	3.20075285912617	-0.797468663834005	0.182100967186042	0.478767986184875
Merged-chr2-145808528-4	chr2	145808429	145808629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	22413.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	6.76276660904185	7.04083791908186	7.69045954603513	7.31757684027924	6.65861150613215	6.88051817358633	6.72947569349551	6.81802090663241	-0.664109053495023	0.00627033566093578	0.0560628340672966
Merged-chr11-107479429-4	chr11	107479343	107479543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025894)	promoter-TSS (NM_025894)	-85.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	7.97325817009837	7.90430569792194	7.92571445853888	7.60182619341923	8.01202565530161	8.04494349938296	7.9832258297939	8.11137125292283	0.245298984352228	0.152003649308682	0.435896601552091
Merged-chr19-53327950-2	chr19	53327850	53328050	+	939.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	-1463.0	NM_010847	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	2.6482832867345	2.61165149100452	2.64861707146091	2.62842209583187	2.46706778910706	2.62347056121585	2.44481405182605	2.51939926481528	-0.654377525132001	0.333036004298749	0.643946257670112
Merged-chr7-4877023-4	chr7	4876923	4877123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101598)	promoter-TSS (NM_001101598)	-30.0	NM_001101598	664994.0	Mm.302624	NM_001101598	ENSMUSG00000086784	Isoc2a	Isoc2	isochorismatase domain containing 2a	protein-coding	8.38868287493304	8.51791974600642	8.29643217971512	8.47592552236799	8.52866090165212	8.59408186048956	8.5144235870804	8.13928519873469	0.0400060461317273	0.812127186808962	0.927419976441895
Merged-chr8-70864917-4	chr8	70864857	70865057	+	995.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7949.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	4.98768351440515	4.76171474306661	4.98853394883053	4.69721121790895	4.78495088753307	4.80311085970742	4.47673754836037	4.5827035779288	-0.376539884373713	0.281331515628648	0.593435750086876
Merged-chr15-77236194-3	chr15	77236090	77236290	+	791.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053104, intron 1 of 13)	intron (NM_053104, intron 1 of 13)	9418.0	NM_001358772	93686.0	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	3.57716415848514	3.80295793601148	3.46797642574101	3.76854210249416	3.61613424992145	3.25586933809089	3.45521747882684	3.46619233173545	-0.672153937247482	0.193517320094781	0.493723433138384
Merged-chr12-101995064-3	chr12	101995056	101995256	+	934.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016856, intron 8 of 14)	(CA)n|Simple_repeat|Simple_repeat	19182.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	3.00842064649475	2.92621801923005	3.24675318558123	2.59072103754581	4.07630384003046	4.01968364199163	4.22845196212715	4.24833733619952	4.88287644614222	2.80910419425978e-14	4.080596478433e-12
Merged-chr8-103578316-3	chr8	103578216	103578416	+	853.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-25483.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	3.98268526846712	3.6928438873653	4.07095969788805	4.03784055271833	3.63579127551489	3.54086236119537	3.82332548849945	4.02535327293901	-0.543784247270229	0.251248883908734	0.56262644899452
Merged-chr1-37315213-4	chr1	37315092	37315292	+	917.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	15354.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	4.43031837557398	4.67056256450568	4.60371677285087	5.17948531751663	4.57501951038765	4.51418622657355	4.45647830318184	4.71641031094884	-0.447509492539249	0.255566892971069	0.567157897415776
Merged-chr19-29462662-4	chr19	29462540	29462740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	ORR1E|LTR|ERVL-MaLR	51721.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	6.53204699704707	6.36735005669142	6.72565933521156	6.87935604311959	6.52401202710956	6.00422419802817	6.46748270356859	6.09356445290661	-0.509361326682754	0.0433791580540446	0.211862569722028
Merged-chr11-120800239-4	chr11	120800134	120800334	+	993.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3839.0	NM_026824	68730.0	Mm.180622	NM_026824	ENSMUSG00000025155	Dus1l	1110032N12Rik	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding	5.54436854268049	5.64512030592796	5.26741872997063	5.25329558626155	5.25950160871427	5.05150653428635	5.3591082436615	5.09823860144556	-0.413381672454132	0.172779305907322	0.466435619909764
Merged-chr7-89415943-3	chr7	89415859	89416059	+	888.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10347.0	NR_102276	101521.0	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	3.63381001145489	3.77790141974682	3.7813130730372	4.16334466403262	3.02871843229715	3.39438250316533	3.45530189865477	3.20824721099845	-2.08776180382138	0.000300418113737559	0.00507679508967847
Merged-chr5-65537159-4	chr5	65537056	65537256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310618)	promoter-TSS (NM_001310618)	-89.0	NM_016786	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	7.48305514755385	7.54905962064743	7.3425999666193	7.53363612803691	7.82088430286328	7.79751858809107	7.75092204001252	7.66555350820819	0.364869329593037	0.029653727478734	0.165943587757614
Merged-chr2-124712998-4	chr2	124712890	124713090	+	832.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	59409.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.18320010049011	3.92533442599402	4.14015132218649	3.42687141493087	4.2345420703109	4.31145603300254	4.07648828445905	3.83924970063527	0.493612451604977	0.311590765240468	0.623631959698671
Merged-chr12-84317467-3	chr12	84317380	84317580	+	729.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252582, intron 1 of 7)	CpG	621.0	NM_001252583	52708.0	Mm.255150	NM_144833	ENSMUSG00000042472	Zfp410	Apa1|D12Ertd748e|Znf410	zinc finger protein 410	protein-coding	3.23444318674544	3.79849837502007	3.29707624494114	3.33157217210239	3.31385341095205	3.41025197700357	3.40010674348216	3.41153880317291	-0.184899236300293	0.732215515624936	0.893952343664963
Merged-chr5-120513023-4	chr5	120512911	120513111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 1 of 13)	intron (NM_001177595, intron 1 of 13)	1819.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	5.86396313840995	6.47323295129004	6.5432408799892	6.50983403800747	6.61432188995391	6.26028837028521	6.27389842373678	6.18467669337643	-0.0439060497317666	0.865565754429271	0.949717980554339
Merged-chr15-79141289-4	chr15	79141193	79141393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310579)	promoter-TSS (NM_001310579)	-32.0	NM_027231	69833.0	Mm.279861	NM_027231	ENSMUSG00000033020	Polr2f	1810060D16Rik|RPB6	polymerase (RNA) II (DNA directed) polypeptide F	protein-coding	6.14627263928856	5.87452825647699	6.10690314678532	5.87514956466859	6.23891837514242	6.36134359444691	5.99112526839114	6.31029166020556	0.36785166525583	0.124827063180844	0.392172737029896
Merged-chr9-21017762-3	chr9	21017642	21017842	+	926.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010493, intron 1 of 6)	B1F2|SINE|Alu	1802.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	3.82231654637901	4.28919918805553	3.70706637378702	3.66737201619562	4.31046230541461	4.10360735799986	3.75177100242068	4.24254788686876	0.609732579080637	0.201813506286202	0.504230998642117
Merged-chr7-103861155-1	chr7	103861055	103861255	+	685.333313	f0_balb.idr	Intergenic	Intergenic	-7948.0	NM_008221	15135.0	Mm.440164	NM_008221	ENSMUSG00000052187	Hbb-y	Ey|Hby	hemoglobin Y, beta-like embryonic chain	protein-coding	3.27812838413472	3.15027864950811	3.17136294796969	3.42908066587582	2.71720524572019	2.73054169081707	3.04340400392381	3.11250231007751	-1.54024769770816	0.0179340262621882	0.118888297688115
Merged-chr2-91487540-2	chr2	91487440	91487640	+	875.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 19 of 37)	B2_Mm2|SINE|B2	30009.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	2.83108490907736	2.85149043372393	2.53818321544856	2.50839452588843	3.19791598496907	3.12847719526465	2.94578966037817	3.01425107469528	1.79330656551931	0.00530424740078548	0.0496973839331986
Merged-chr3-135522127-3	chr3	135522022	135522222	+	732.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027288, intron 5 of 16)	intron (NM_027288, intron 5 of 16)	36511.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	3.24031720708376	3.35573870563464	3.01758657694081	3.16154986169664	2.9908529492339	2.92723580184365	2.74145278291066	2.81958194234112	-1.39419886776103	0.0275218512196065	0.158262873482014
Merged-chr6-125445476-4	chr6	125445363	125445563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR85a|LTR|Gypsy?	49297.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	8.11605544321727	8.30557911392095	8.03827689277769	8.083771411026	8.21270932785077	8.33279761286305	8.41722222607492	8.27351033634659	0.21583783204983	0.173952941787022	0.468213348974044
Merged-chr9-124054600-1	chr9	124054500	124054700	+	568.666687	f0_balb.idr	Intergenic	Intergenic	32629.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	3.85031222870992	3.68360826463339	3.66472378022857	3.40502824308621	3.13807948664106	3.83500447834355	3.37396817758644	3.25493790518365	-0.767425921795839	0.172797845595009	0.46645850468777
Merged-chr13-80960030-4	chr13	80959922	80960122	+	785.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4052.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	4.12235579941499	3.78966425429809	4.20590471074816	4.23736834411901	4.06800498600474	3.95243385192401	3.76453942479941	3.831156791264	-0.520857036782577	0.245997279329963	0.557194601286473
Merged-chr9-78481766-4	chr9	78481713	78481913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010106)	promoter-TSS (NM_010106)	-89.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	8.33492460057731	8.45470634960941	8.30812130418943	8.29895716319532	8.70180525248695	8.75221587109546	8.77730562801934	8.44800528864553	0.413043975826016	0.0081419012294851	0.0679883138917785
Merged-chr3-119783134-6	chr3	119783114	119783314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019550, exon 1 of 14)	5' UTR (NM_019550, exon 1 of 14)	174.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	6.76244258701273	6.71124516181498	7.34152552522887	6.64079575514177	6.588158310294	6.40485012474198	6.56380893023184	6.56015548003144	-0.503362640485536	0.0373743071688897	0.192954653657387
Merged-chr3-108146159-4	chr3	108146107	108146307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010306)	promoter-TSS (NM_010306)	-55.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	6.81947578667249	6.69129697990955	6.73708455634618	6.58491861646511	6.73458628388217	6.65934072334279	6.75896697297923	6.64269846815089	0.00189072281995027	0.992482639692453	0.997232174860037
Merged-chr1-125426522-3	chr1	125426414	125426614	+	878.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205386, intron 2 of 12)	URR1A|DNA|hAT-Charlie	9213.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	3.59471942838955	3.72683060855472	3.53921571096759	3.95143274637897	3.51250390264949	3.65454045705552	3.58138178234315	3.64682229552751	-0.416007111474075	0.396134640930947	0.695059225647051
Merged-chr3-126661192-4	chr3	126661077	126661277	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	64226.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	6.14333059151966	6.33829194065826	5.85284446405611	5.86252900081901	5.68249030847138	6.11804962096045	5.41474715060827	5.40537768716656	-0.606432280045393	0.0415816211969059	0.206528240905596
Merged-chr9-121277736-4	chr9	121277634	121277834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177589)	promoter-TSS (NM_177589)	-562.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	6.25544930189485	6.66532632577651	6.1454672607138	6.58213530630753	7.00922440263541	7.1343378839038	7.21474912596914	6.83829544987878	0.862422041084159	0.000157262868822504	0.00296918136337322
Merged-chr1-156719124-4	chr1	156719030	156719230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145413)	promoter-TSS (NM_145413)	-220.0	NM_145413	215015.0	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	7.76234385528621	7.96365363833155	7.89409196032351	7.91235629617331	7.9347653594112	7.97312411506878	8.22996457332047	7.79030595854575	0.134152399711539	0.438618330525014	0.726613776815695
Merged-chr6-49035955-4	chr6	49035864	49036064	+	788.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053110)	promoter-TSS (NM_053110)	-554.0	NM_053110	93695.0	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	3.63994093564688	3.71388486965864	4.1338851308964	4.12406655815515	4.00004993186216	4.08094456971224	3.56673554296608	3.80704492581391	-0.138981140963448	0.776581108956971	0.912932991254018
Merged-chr12-70968634-4	chr12	70968556	70968756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5967.0	NM_001310595	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	6.75673822862849	6.54177141935654	6.51162836504977	6.45648464073025	6.75325636947702	6.98794840305199	6.4783510981419	6.58920321362676	0.218378379721853	0.323855136399507	0.635365198141741
Merged-chr11-3193184-4	chr11	3193200	3193400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 1 of 32)	CpG	163.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	8.95670643901215	8.49795111573218	9.48037795114983	9.01346135132496	7.04152509738709	7.51994579230741	7.24219379779337	7.64730202982923	-2.11659260001152	3.47396940524028e-19	1.06126037895106e-16
Merged-chr18-13007766-4	chr18	13007662	13007862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153087, intron 1 of 2)	intron (NM_153087, intron 1 of 2)	772.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	6.42127189857097	6.19882277231567	6.23358337110922	6.64509477535511	6.74746457296232	6.47023885186956	6.38955665889228	6.64190193717628	0.253020976504363	0.283604160765417	0.595722718088449
Merged-chr9-121248193-3	chr9	121248091	121248291	+	654.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_177589, intron 16 of 36)	intron (NM_177589, intron 16 of 36)	28981.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	3.95010542093452	3.65883767606978	3.50450594804643	3.82575083982266	4.08073240074325	3.92130532310148	3.78511772958584	4.24139718215393	0.752303820364738	0.105241388489836	0.356951147970935
Merged-chr14-16243308-4	chr14	16243212	16243412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359883)	promoter-TSS (NM_001359883)	19.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	8.07534966120628	8.187269580028	7.94006183049455	8.00051192974297	8.13158708879047	8.34174740719515	8.03174742394287	8.08417418893605	0.125126496046179	0.447100220232286	0.732764620286541
Merged-chr15-66950347-4	chr15	66950248	66950448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008681, intron 3 of 15)	intron (NM_008681, intron 3 of 15)	19293.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	5.82112473245587	5.5482685665466	6.16555011819404	6.19855441402784	5.80322869367092	5.84326638351171	6.29149076794113	5.9797300692941	0.0324298364607445	0.909270416011932	0.966272901482731
Merged-chr18-80690117-4	chr18	80690036	80690236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 2 of 9)	intron (NM_198429, intron 2 of 9)	18037.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	6.79647332703499	6.48994853690546	6.9014109808133	6.86404316905118	6.53986907613247	6.29417521775107	6.44250090145559	6.70899216453002	-0.383983554551934	0.0842302998856305	0.315715035047883
Merged-chr2-153122902-4	chr2	153122806	153123006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	14438.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	6.1137441678279	5.91719935279954	6.19328029139345	6.30829119056286	6.15873747574059	5.80768173647332	6.40152929718	5.73680058274247	-0.134555849449204	0.616914867184062	0.835230024941879
Merged-chr13-97567847-4	chr13	97567788	97567988	+	976.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046157, intron 2 of 2)	intron (NR_046157, intron 2 of 2)	7888.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	5.193901706537	5.09081929981233	5.0669631835876	5.29430427538932	5.04396674684359	5.24034670815957	5.04239925702618	4.80384646017051	-0.256339020258456	0.410175210206352	0.70557193956543
Merged-chr18-75304666-4	chr18	75304571	75304771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7342.0	NR_045393	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	7.06935794022678	6.72863625678324	6.98523782738586	7.37047269959382	6.96956640338799	6.7835176527296	7.10349352458712	6.9022553982171	-0.174233821662654	0.432843141904964	0.72266418027475
Merged-chr11-117317158-4	chr11	117317045	117317245	+	899.770874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-14570.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	4.55176140889205	4.76082918490496	4.3322170087199	4.65966513583688	4.8137347169786	4.41194404873803	4.16300203845086	4.73711457433806	-0.0524359525200316	0.894894272534481	0.96069135232764
Merged-chr11-73177110-4	chr11	73177009	73177209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025318)	promoter-TSS (NM_025318)	26.0	NM_029564	76281.0	Mm.371656	NM_029564	ENSMUSG00000040158	Tax1bp3	1300011C24Rik|TIP-1	Tax1 (human T cell leukemia virus type I) binding protein 3	protein-coding	8.39642552166539	8.46675912705781	8.21383114089248	8.15433824595852	8.3854426306984	8.42119891989918	8.30043431997921	8.23808832566802	0.0368512963042028	0.819382026468168	0.930843810041761
Merged-chr12-70005310-4	chr12	70005205	70005405	+	853.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-18303.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	3.96078358777919	3.98718931808978	4.01284436455591	4.17223015565324	4.06709012411316	4.08433671528805	4.51944851418797	4.10762265435405	0.40926860494435	0.333499001838378	0.644234956763207
Merged-chr4-136148714-7	chr4	136148604	136148804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4882.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	5.70121123021175	5.4534170637902	5.08195426884673	5.41928480208105	5.2734640216296	5.32930457890573	5.09308010323769	5.39811677065535	-0.276359804803885	0.359600520670473	0.665436252718149
Merged-chr2-31670685-4	chr2	31670582	31670782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144886)	promoter-TSS (NM_144886)	-33.0	NM_144886	227715.0	Mm.150972	NM_144886	ENSMUSG00000039356	Exosc2	Rrp4	exosome component 2	protein-coding	6.34624550791845	6.04385878389516	5.48632274495555	5.32755015656256	6.33432049708628	6.0421052078031	5.68764871723072	5.81395496747818	0.223447142799388	0.505974656891039	0.771789175871062
Merged-chr16-38341847-4	chr16	38341751	38341951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081025)	promoter-TSS (NM_001081025)	9.0	NM_001081025	320214.0	Mm.294342	NM_177104	ENSMUSG00000022805	Maats1	4932425I24Rik|Aat1|CFAP91|Spata26	MYCBP-associated, testis expressed 1	protein-coding	6.23938478896703	6.19171751906045	5.88728163033014	5.97979089550996	6.41455344590413	6.67507072944299	6.52812559043569	6.17688273464194	0.574869018622992	0.0160552833838091	0.109916227370987
Merged-chr7-6127261-4	chr7	6127157	6127357	+	942.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28714.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	5.21764583643103	5.18144554555404	4.62327705160827	5.2732649905146	5.43597346813734	5.13029216069547	4.89441497503734	4.91446274647561	0.0297627807799852	0.932740844886051	0.975757811872694
Merged-chr17-35202604-4	chr17	35202503	35202703	+	972.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278601)	promoter-TSS (NM_001278601)	-596.0	NM_001278601	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	5.00633863672532	5.10096900212488	4.51520883579414	3.62964303399651	5.21813911254893	5.01467725731826	4.8845951502099	4.4173205367469	0.444496772930967	0.373855378062147	0.677236453187223
Merged-chr4-19894779-4	chr4	19894688	19894888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 2 of 7)	L1MC3|LINE|L1	27778.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	7.12075209435687	7.15937613390839	7.46851870016099	7.31889799277387	7.04402449891127	6.98105120992291	7.26062965951805	7.00664496739947	-0.269589561331326	0.163976420070401	0.45390361686984
Merged-chr9-90208877-4	chr9	90208776	90208976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 11 of 12)	L1ME4b|LINE|L1	45898.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	5.45965458069067	5.42379617022747	5.64507447015568	4.99765943118951	5.8550600964692	5.74314381102788	5.59168302704633	5.06181956767111	0.372006452622689	0.259790819512571	0.571577407891089
Merged-chr9-90077035-4	chr9	90076958	90077158	+	822.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007801)	TTS (NM_007801)	22791.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	3.91141621594694	3.93065162229072	3.8601170250178	3.69974631345632	4.02402691456915	4.08475819635037	3.94498642933246	4.2231252056374	0.629724578382449	0.138826393893768	0.414381792154761
Merged-chr11-116985719-4	chr11	116985620	116985820	+	824.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172948, exon 17 of 17)	3' UTR (NM_172948, exon 17 of 17)	66857.0	NM_172948	268510.0	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	3.46906669067562	3.24367473991922	3.41760128147731	3.3127518094121	3.44160109251846	3.01265348480494	3.29458357397265	3.46754294670442	-0.135059452435234	0.805680570475279	0.925243821910906
Merged-chr10-14115176-4	chr10	14115067	14115267	+	936.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 4 of 12)	Lx9|LINE|L1	148788.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.07540253280786	4.28332165861611	4.43893099888853	4.37486418140773	4.32925408773746	4.2012827156593	4.69689195837833	3.96487199567919	0.0576967830439105	0.891376876620943	0.959375127786042
Merged-chr5-64780980-4	chr5	64780876	64781076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22547.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	7.08774947133299	6.21976723531126	6.44493888595477	6.73837765814302	6.26387160736786	6.60421289684098	6.52856253519997	6.4047535869323	-0.310114144135852	0.232258855593509	0.541891165796319
Merged-chr10-20349121-4	chr10	20349012	20349212	+	964.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027930, intron 2 of 6)	MTC|LTR|ERVL-MaLR	1293.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	5.2086310825243	5.10785527889534	5.08125929858368	5.29029545149845	6.90311268047502	7.03523981980679	6.89031763992308	6.87668335361149	2.65882513552373	1.12508528600103e-25	7.62689957831115e-23
Merged-chr4-129987894-4	chr4	129987817	129988017	+	935.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199696, intron 1 of 28)	CpG	2839.0	NM_173071	230775.0	Mm.262241	NM_173071	ENSMUSG00000028782	Adgrb2	Bai2	adhesion G protein-coupled receptor B2	protein-coding	4.44986095142029	4.43264891004091	4.49061777612411	4.15129133364062	4.43810836251019	4.45070114108807	4.5080962897601	4.12627630260383	0.041151738370028	0.916039265606795	0.968912323381988
Merged-chr6-126702180-4	chr6	126702078	126702278	+	975.5750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38496.0	NM_013568	16494.0	Mm.62535	NM_013568	ENSMUSG00000038077	Kcna6	Kv1.6|MK1.6	potassium voltage-gated channel, shaker-related, subfamily, member 6	protein-coding	5.36238739452341	4.84913397727221	5.21220183015341	5.41309730680689	5.22377908854486	4.9833934345127	5.15420062111575	5.88564813285395	0.229884664056397	0.518409245846312	0.779497480039179
Merged-chr2-27232535-4	chr2	27232435	27232635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138665, intron 8 of 20)	intron (NM_138665, intron 8 of 20)	14768.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	6.94439173373031	6.80570180946077	7.22079994447352	6.81144349656481	6.35508492747477	6.71961524515397	6.3843304015965	6.60354120623028	-0.616889758165448	0.00550256042957405	0.0509916350496877
Merged-chr7-16273481-4	chr7	16273377	16273577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001136471)	TTS (NM_001136471)	215.0	NM_001136270	66300.0	Mm.218698	NM_001136270	ENSMUSG00000091811	Inafm1	2610014I16Rik|Prr24	InaF motif containing 1	protein-coding	7.04075250489312	7.17716485257687	7.12618519873544	7.33434892750593	7.02055595163501	7.15533389213811	7.15807454283178	7.13275827161176	-0.0984636860483497	0.599900698204872	0.826616767892885
Merged-chr1-91180001-3	chr1	91179903	91180103	+	872.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178401, exon 1 of 3)	5' UTR (NM_178401, exon 1 of 3)	181.0	NM_001168392	51801.0	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	3.36923652254934	3.35208190421348	3.53083414741357	3.50836695761891	3.3873305911999	3.29560312726158	3.46557457279825	3.42390396326881	-0.178466682405768	0.724881547801115	0.890528723156002
Merged-chr1-24587478-1	chr1	24587378	24587578	+	621.0	f0_balb.idr	promoter-TSS (NM_007733)	promoter-TSS (NM_007733)	-41.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	3.12821511438961	2.85991972959279	2.90349676709668	2.8811287219992	2.66273453997741	2.81062457087552	2.83095410989495	3.01938178784334	-0.500987082448586	0.424546951477361	0.716256995782564
Merged-chr10-21636872-4	chr10	21636772	21636972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43727.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	5.89629169901198	5.89770049209647	6.24620307796907	6.21692778051186	5.9051836082356	6.04979507767704	5.97967782637934	6.00605333618227	-0.160566385105154	0.512590035180229	0.77591327696453
Merged-chr12-84802842-4	chr12	84802745	84802945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 16 of 34)	intron (NM_013589, intron 16 of 34)	29575.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	5.85993534441492	6.128033515341	5.487861449668	5.57088036099142	5.60323052450473	5.63557232476409	5.59628362235258	4.91332924203694	-0.524595635703691	0.107144758283002	0.361169575195389
Merged-chr4-140702756-4	chr4	140702720	140702920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173867, intron 2 of 12)	CpG-10575	1347.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	5.28256316249051	5.30671602204101	5.4612368994765	5.276995720359	5.49228386289461	5.76436218022424	5.22550916923779	5.48472295273501	0.306215390866123	0.284519729454948	0.596326074699618
Merged-chr15-25268586-4	chr15	25268480	25268680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	145184.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	7.13084039979644	6.89113292784753	6.55685253351995	6.98058145828581	7.10719971400731	7.14425582681833	6.65454097091922	6.63606793694	0.00345958180311692	0.988254298988766	0.995400361517539
Merged-chr13-51418819-4	chr13	51418795	51418995	+	909.6904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010101, exon 2 of 2)	exon (NM_010101, exon 2 of 2)	10277.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	3.80447056765224	4.11341189907132	4.05662670286277	3.48724623519777	4.1360579307753	4.08540442222539	3.89518112897273	4.09895336035291	0.498064273573731	0.286058430770372	0.597615363323773
Merged-chr16-30252276-4	chr16	30252165	30252365	+	976.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15267.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	4.82685711076474	5.06076111216547	4.52235576517621	5.18587274702748	5.05627858658731	5.00343901597565	5.30733199920769	4.89995713747384	0.256749530706512	0.465089953208974	0.745723070156486
Merged-chr13-65101479-4	chr13	65101383	65101583	+	931.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083901, intron 2 of 12)	intron (NM_001083901, intron 2 of 12)	11499.0	NM_001083901	66631.0	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	4.93598216924359	4.46200079952504	4.54471551670372	4.53426584705727	4.79596559669648	4.39513667930692	4.60412670733699	4.62266798680839	-0.00535157648998096	0.98845242367673	0.995447921566191
Merged-chr3-97338970-4	chr3	97338849	97339049	+	761.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72230.0	NM_146275	258272.0	Mm.377406	NM_146275	ENSMUSG00000051392	Olfr1402	MOR217-1	olfactory receptor 1402	protein-coding	3.71035460138419	3.51709971786163	3.32445562629761	3.41247251225609	3.25877325871886	3.73020968778791	3.74075925624469	3.50232213914473	0.233643372044336	0.654010779572504	0.855370583745682
Merged-chr2-128067541-4	chr2	128067460	128067660	+	925.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028765, intron 14 of 17)	intron (NM_028765, intron 14 of 17)	-58478.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	4.79436876024653	5.40225268997741	4.79515391060034	4.08914861599845	5.46860544855058	5.42733977274536	5.25538127504902	5.46634353109806	1.03849970758887	0.00976244897767022	0.0776056908400255
Merged-chr2-129582277-2	chr2	129582161	129582361	+	661.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-10578.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	2.79911137961522	2.87236965538612	3.04289216385477	2.5787763481304	2.37775809142862	2.35455706996332	2.33302741607747	2.55290565630048	-2.69406159934363	0.00157057714146549	0.0193915195754332
Merged-chr5-110613604-1	chr5	110613504	110613704	+	542.0	f0_balb.idr	intron (NR_104449, intron 1 of 5)	ORR1D2|LTR|ERVL-MaLR	10099.0	NR_104449	231605.0	Mm.275748	NM_198306	ENSMUSG00000033316	Galnt9	GalNAc-T9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding	3.05838001104547	2.84399799834377	2.83600134641062	2.80257119076915	2.82078801508829	2.59184952478463	2.7644132677433	2.70690411787044	-0.741640032542397	0.252355582208915	0.563645884616847
Merged-chr11-121796223-4	chr11	121796111	121796311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34007.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	6.9788529613249	7.05390573408537	7.017357769301	7.03571290300372	6.74077831550694	7.05165807125719	7.06454148907131	6.8281588218872	-0.142415401639636	0.465500961407617	0.745939641415447
Merged-chr7-141061029-6	chr7	141060958	141061158	+	721.222229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177897)	promoter-TSS (NM_177897)	-216.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	3.58979153796233	3.70826474238213	3.64190693445811	3.54810867320315	3.48896547308211	3.47335896494843	3.41002263356901	3.68920648565986	-0.33046885278012	0.498078387602347	0.767487809303244
Merged-chr4-53157445-4	chr4	53157342	53157542	+	943.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	2453.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	4.380385734152	4.79104774235769	4.67207305973145	4.34220224967571	4.51123161609851	4.91412514476676	4.26618792196584	4.59242318073212	0.0754421958308633	0.847276853911998	0.942256492170064
Merged-chr9-70650466-4	chr9	70650354	70650554	+	990.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172772, intron 1 of 8)	intron (NM_172772, intron 1 of 8)	6720.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	4.78386380815233	4.73241012532893	4.29758007909079	4.95310222748535	5.14770153060479	4.67440193007811	4.47624940960217	5.01631217821605	0.284754981494332	0.468479231730569	0.747803507343786
Merged-chr8-116951113-4	chr8	116951016	116951216	+	947.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177700, intron 1 of 3)	intron (NM_177700, intron 1 of 3)	7723.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	4.41745763616974	4.715416875313	4.54959308060292	4.95313231960034	4.50103206506295	4.40057361128019	4.68396188937204	4.73937974966799	-0.234878588109627	0.532580849445726	0.788200754532765
Merged-chr2-27349128-3	chr2	27349026	27349226	+	837.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	78482.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	3.47855105162957	3.33672387722726	3.32853829086893	3.31158326910915	3.01561015857895	2.99650091971702	3.14650222862006	3.09387463490146	-1.19394602462207	0.0351515372951519	0.185805084890214
Merged-chr1-127206346-5	chr1	127206252	127206452	+	992.9933470000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	1366.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	4.73653013814143	4.63988036936571	5.08605572091865	5.04270595778176	4.96336685970593	4.83124866500643	4.89996971704689	4.88522744436428	-0.00150746192261916	0.996408145730182	0.998602617451138
Merged-chr6-70844315-4	chr6	70844197	70844397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010121)	promoter-TSS (NM_010121)	-218.0	NM_010121	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	9.18567436930311	9.20389307533771	9.47655951771476	9.34548179785345	9.1564116056901	9.45360538209741	9.30688852662458	9.28172845191389	-0.0088855126187088	0.952965425465396	0.983277820010102
Merged-chr13-64929253-2	chr13	64929152	64929352	+	804.083374	f0_balb.idr|f1_balb.idr	Intergenic	MurERV4-int|LTR|ERVK	11846.0	NM_030047	78124.0	Mm.342895	NM_030047	ENSMUSG00000056223	Spata31	4930458L03Rik|Aep1|Fam75a|Spata31a|Vad1.3	spermatogenesis associated 31	protein-coding	3.71468396082218	4.32627199954413	3.71527809899502	4.36018744385969	2.80983541871994	3.04119966974198	3.15431776489148	3.00588710106356	-5.500339851922	8.14912382701645e-08	3.54551641126653e-06
Merged-chr4-40876931-4	chr4	40876906	40877106	+	927.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22469.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	4.08581012156602	4.58965203566148	4.33161084542238	4.62142571181088	4.48520601781745	4.41344097657938	4.3560098324723	4.28351753791849	-0.118087603081302	0.765998667638749	0.908474726137338
Merged-chr9-96630866-6	chr9	96630706	96630906	+	998.694458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053268, intron 1 of 23)	CpG	697.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	3.96574565885911	3.95070613026221	4.20567821430759	3.91869373732386	4.35071907625498	4.24021823420203	4.09733492544481	4.24590673404886	0.60618746601451	0.134038051621938	0.407670811685954
Merged-chr3-61441573-4	chr3	61441465	61441665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77058.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	7.19845167233523	6.65483430505785	7.14603995396566	7.00803218643835	6.87322326363248	6.86520092594819	6.9089785539456	6.8316550359745	-0.200311197500145	0.337303729649215	0.647036656408706
Merged-chr13-76384644-5	chr13	76384455	76384655	+	943.209534	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030174)	promoter-TSS (NM_030174)	-406.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	5.33231863936523	4.86890973993699	5.40964446301146	5.30841231202612	4.39454935577527	4.79103719290906	4.75946068003546	4.93135288381464	-1.04202879216585	0.00306321100979037	0.032528165965369
Merged-chr19-11804630-4	chr19	11804530	11804730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	14773.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	5.72255840446866	5.79738120152738	5.99085118537734	5.82220627217297	5.12783233861057	5.68502752840228	5.81207349200293	5.74405579945363	-0.38254273965792	0.186251801266541	0.484125681380109
Merged-chr8-84800454-4	chr8	84800356	84800556	+	995.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010906)	promoter-TSS (NM_010906)	-118.0	NM_001081982	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	4.79638908714344	5.43324543920699	5.30074206147533	5.11263309418376	5.52275798470053	5.50336595525862	5.46568924915685	4.87886435804658	0.345318972005791	0.303416621159711	0.616068338587604
Merged-chr4-14864227-4	chr4	14864109	14864309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028264)	promoter-TSS (NM_028264)	-10.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	7.43243710897671	7.17980267030706	7.14948720503796	7.33032700399874	7.30646620006294	7.3149903967022	7.64310703352051	7.1444761202796	0.114369028972126	0.561368646710084	0.80494560024742
Merged-chr1-125458708-4	chr1	125458601	125458801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22974.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	6.38630698093368	6.11770718787346	6.42209091862348	6.37917528493248	6.21379788106855	6.37502515553054	6.53359979508533	6.50010496810679	0.107884629649097	0.633225837589454	0.844526548506272
Merged-chr5-149454439-2	chr5	149454339	149454539	+	933.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029464, intron 3 of 6)	intron (NM_029464, intron 3 of 6)	14779.0	NM_001310765	75860.0	Mm.159605	NM_029464	ENSMUSG00000029660	Tex26	4930588N13Rik	testis expressed 26	protein-coding	2.39637499743749	2.25979238281636	2.10098629169022	2.1485112454325	2.32245025151619	2.56800548852059	2.45193047392273	2.5216773613569	1.42580923235952	0.0543549571293589	0.243436197917992
Merged-chr14-68655861-4	chr14	68655773	68655973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183366)	promoter-TSS (NM_183366)	-31.0	NM_183366	13522.0	Mm.117450	NM_010082	ENSMUSG00000014725	Adam28	C130072N01Rik|D430033C21Rik|Dtgn1|MDC-L|MDCL|TECADAM|eMDCII	a disintegrin and metallopeptidase domain 28	protein-coding	5.65898741351995	5.9895730492801	5.9840080676991	6.28328731283569	5.42610019640301	5.75536648542888	5.43334908029803	5.42559764419396	-0.832345150564127	0.00315652583879962	0.0332069690629497
Merged-chr3-9020422-4	chr3	9020312	9020512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER89-int|LTR|ERV1	-15689.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	8.5980626754282	8.80320788220889	8.72997624503602	8.5547309778516	8.26799898769042	8.58403203450172	8.63548746897179	8.48869391242742	-0.22133721241359	0.174568951232434	0.469051503520948
Merged-chr14-118674863-4	chr14	118674784	118674984	+	928.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 1 of 29)	intron (NM_001163676, intron 1 of 29)	2047.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	4.72034982130942	4.58047756434621	4.56462197739646	4.98059202768859	4.57678183732888	4.65372273239367	4.4139398033793	4.68069581666614	-0.339317457913838	0.350916180909183	0.658369035581716
Merged-chr19-56797544-4	chr19	56797442	56797642	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_170757, exon 11 of 15)	exon (NM_170757, exon 11 of 15)	16141.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	5.55525346186098	5.59563270496601	5.26601991870384	5.97737420776113	5.35757133329016	5.11660527771264	5.24016536914016	5.44415735658415	-0.605569384144122	0.051484724546012	0.235713077021971
Merged-chr15-66812703-4	chr15	66812608	66812808	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009192, exon 2 of 9)	5' UTR (NM_009192, exon 2 of 9)	19121.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	5.64591100704709	5.46566339459523	5.62313483876709	5.46994785025995	4.99869758987638	5.47122849667515	5.03306570550354	5.26076351660122	-0.636152042810441	0.03178954845379	0.173977261986185
Merged-chr6-116693751-4	chr6	116693646	116693846	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178768, exon 5 of 5)	3' UTR (NM_178768, exon 5 of 5)	-19910.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	5.29709931913667	5.10889848258994	4.86684415235904	4.90345357441898	5.77911661450755	5.64228550927286	5.4147699309926	5.46542874544077	0.982262720227663	0.000953013540825445	0.0129554145955719
Merged-chr8-33673836-4	chr8	33673738	33673938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010344, intron 4 of 12)	intron (NM_010344, intron 4 of 12)	20600.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	5.87745998902548	6.06537075948088	6.31220795961791	6.1318289994382	7.53781925106143	7.13574481733721	7.22666406843388	7.49528250466865	1.77471353111509	4.30270231925536e-16	8.34501494229638e-14
Merged-chr5-147584085-2	chr5	147583985	147584185	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010228, intron 20 of 29)	intron (NM_010228, intron 20 of 29)	141903.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	2.52390509387736	2.8281101837322	2.74239192219426	2.87081802889254	2.97651243608438	2.97761270779377	2.91874450488501	2.92829351519448	0.861589020621672	0.180026167084013	0.476359945980408
Merged-chr12-84195344-4	chr12	84195244	84195444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	-1329.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	6.53686098420327	6.84579886786003	6.52111036827709	6.14818265559208	6.94773818346034	7.02452663951377	6.6316274724058	6.66092100944669	0.436202845608271	0.0738668352724297	0.292797653720347
Merged-chr2-152756696-4	chr2	152756590	152756790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053091, intron 2 of 4)	intron (NM_053091, intron 2 of 4)	2517.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	5.99847950614982	5.63216099330131	5.93387030306876	6.41931778407432	5.80964396001518	5.86436409549644	6.10908851315377	5.76183648011624	-0.246712726432134	0.389107126353517	0.689374802932542
Merged-chr6-146501598-4	chr6	146501445	146501645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 1 of 56)	intron (NM_019923, intron 1 of 56)	678.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	5.57499962098914	5.29066454766164	5.80618707922178	5.8376662734978	5.76037076042424	5.83295688158413	5.92950808274351	5.87025855871588	0.311074320217611	0.255269021151227	0.566852976271238
Merged-chr9-116156771-3	chr9	116156666	116156866	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	18597.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	6.76960902300526	6.6408392676596	6.922084506686	6.87592733704498	4.2439940391342	4.60948700767316	4.49716003279025	4.63193945247229	-4.41509590262227	2.21512729792296e-34	4.04283451125278e-31
Merged-chr17-5711547-4	chr17	5711460	5711660	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 3 of 8)	intron (NM_146073, intron 3 of 8)	-87097.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	5.16475894590717	5.38218618350719	5.06325319962585	5.37384030666908	4.99732758479968	4.96945445007397	5.20375814187955	5.68938580108739	-0.0301573282593962	0.927702122016621	0.973615800862715
Merged-chr4-128984768-4	chr4	128984669	128984869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8455.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	5.31418044672978	5.21863348508327	5.66279778042916	5.98199984661671	5.97965437076104	5.39204246321484	5.60863929899543	5.86830088694398	0.232049725402067	0.475940352717645	0.752613315770901
Merged-chr18-79759056-4	chr18	79758956	79759156	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-287839.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	4.83877962702792	4.25655123192311	5.02180814152316	5.4168030190339	5.18660457788695	5.26096708571474	4.99727105431495	5.08450152363258	0.320582070267961	0.424749699431817	0.716444912340512
Merged-chr18-23750288-3	chr18	23750192	23750392	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_126066)	TTS (NR_126066)	2013.0	NR_126066	100502834.0	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	-	predicted gene 15972	ncRNA	3.61884400403036	3.60918018498	3.56724284593046	3.43886120244921	3.33949830479468	3.44871610221219	3.55287407493024	3.71531812426653	-0.1221659933354	0.806287569780756	0.925403404379838
Merged-chr1-85598793-4	chr1	85598682	85598882	+	891.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030194)	promoter-TSS (NM_030194)	28.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	4.53421158547157	4.71816187534139	4.40681478028511	4.20067736877851	4.51375783267907	4.58171017900309	4.7006016955282	4.53200663811369	0.262086289482705	0.48532737117605	0.759216653544759
Merged-chr3-31445646-3	chr3	31445542	31445742	+	916.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135323.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	3.9139116773651	4.26956247598567	3.86300227154192	4.25277704452098	3.82237956609271	3.9837664097421	3.84750612630697	3.75158739804692	-0.689037075455232	0.125200801948937	0.392705586829569
Merged-chr15-59705820-4	chr15	59705742	59705942	+	929.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57188.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	4.5052036761573	4.4997441542587	4.58896056539808	4.65319965533654	4.712810166565	4.63662889697966	4.56790738500156	4.77227308577368	0.229351976845646	0.50688174057377	0.772593319178149
Merged-chr11-116653833-2	chr11	116653733	116653933	+	971.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_030206, exon 1 of 4)	exon (NM_030206, exon 1 of 4)	480.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	2.91522480240523	2.86974320595569	3.59647529944388	2.70879158182317	2.70339082400926	2.74205288066956	2.70047129933099	2.97656682030946	-1.21911724344269	0.084900754645373	0.31700943266553
Merged-chr6-136828853-2	chr6	136828753	136828953	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178776)	promoter-TSS (NM_178776)	10.0	NM_178776	320135.0	Mm.386899	NM_178776	ENSMUSG00000047515	BC049715	-	cDNA sequence BC049715	protein-coding	3.17509070279861	3.11245243876668	3.17552477333879	2.52260999690177	2.92177430194107	3.62341529383483	3.27938572258999	3.45051263418759	1.17346786707001	0.0807240984196401	0.308201423535961
Merged-chr15-98664423-3	chr15	98664326	98664526	+	871.5833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1537.0	NM_001080981	74351.0	Mm.45725	NM_001080981	ENSMUSG00000003360	Ddx23	3110082M05Rik|4921506D17Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	protein-coding	3.34556115298476	3.39827849505873	3.34595651376335	3.29913618974065	3.72253974141008	3.75298620506773	3.66866462978768	3.90868532021696	1.35731430337628	0.00452051792003401	0.0440835655610496
Merged-chr14-54715125-3	chr14	54714974	54715174	+	885.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2900.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	2.89683724738597	3.0907203971192	3.0896005710606	3.17461952609497	3.31563048385152	3.19808670951574	3.07886119864613	3.14662674332968	0.458981089333754	0.41893928335621	0.712179772396447
Merged-chr7-31042196-4	chr7	31042077	31042277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111073)	promoter-TSS (NM_001111073)	154.0	NM_008761	18301.0	Mm.1870	NM_008761	ENSMUSG00000009687	Fxyd5	EF-8|Oit2|RIC	FXYD domain-containing ion transport regulator 5	protein-coding	5.43867164666134	5.26375132517147	4.88101585318878	5.28937383298418	5.65162040137572	5.69528131748195	5.49397028674706	5.69112214884329	0.69004924546653	0.016523165010383	0.112352155356711
Merged-chr11-121228771-2	chr11	121228645	121228845	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001252549, intron 1 of 6)	intron (NM_001252549, intron 1 of 6)	195.0	NM_001254735	217370.0	Mm.27182	NM_144832	ENSMUSG00000039294	BC017643	-	cDNA sequence BC017643	protein-coding	4.70367757538072	5.0060861574503	4.85618709307462	4.72162759001682	4.66360939616028	4.83921008884526	4.76001510620739	5.05085678570841	0.0143127843546632	0.966234901042189	0.988061043386973
Merged-chr1-36961032-4	chr1	36960915	36961115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21488.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	6.806147994286	6.7373183469735	6.76530684995783	6.73714626241655	6.80386081782736	6.50534029071302	6.75897338982332	6.86953757613811	-0.0180347879441147	0.92865028006124	0.974091893381396
Merged-chr2-142700912-3	chr2	142700828	142701028	+	773.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 23 of 26)	intron (NM_001355123, intron 23 of 26)	200536.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	3.39444180259772	3.2869602309007	3.32911252115514	3.59640100224976	3.71772202984352	3.69339472316174	4.05837919240202	3.91532741051796	1.32057262755066	0.0100262785026804	0.0790671922825488
Merged-chr3-100162980-1	chr3	100162880	100163080	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_175552)	promoter-TSS (NM_175552)	517.0	NR_104341	14547.0	Mm.279228	NM_010269	ENSMUSG00000027865	Gdap2	C77050|D3Ertd801e	ganglioside-induced differentiation-associated-protein 2	protein-coding	4.19896280393929	4.48304009024436	4.342029261034	4.15658296955735	4.65843339604183	4.32684748392966	4.48936209567307	4.65582115649986	0.58569753682203	0.120908020085713	0.385060937882816
Merged-chr16-97851592-11	chr16	97851498	97851698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144789)	promoter-TSS (NM_144789)	252.0	NM_001359078	114604.0	Mm.328741	NM_144789	ENSMUSG00000014039	Prdm15	C21orf83|E130018M06Rik|ORF62|Zfp298	PR domain containing 15	protein-coding	6.42854990129905	6.28113269930663	6.01804362921694	6.23287192021456	6.79072820984947	6.72316722052533	6.97463497728971	6.47672096710638	0.740574867251859	0.00110418375840039	0.0145411092949457
Merged-chr1-66700333-4	chr1	66700219	66700419	+	976.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025683)	promoter-TSS (NM_025683)	-512.0	NM_025683	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	4.43038105963786	4.08948442379309	4.50749801493044	4.39730507263957	4.27914348779567	4.14000065075588	4.41045752566658	4.01357916944664	-0.344169322949876	0.396114547699497	0.695056962841936
Merged-chr13-45001609-4	chr13	45001458	45001658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 1 of 9)	intron (NM_025772, intron 1 of 9)	538.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	6.5687942443649	6.72990927660009	6.71535681318273	6.54042485400935	6.26556428054242	6.26581402711928	5.91377970049843	6.34694861105157	-0.631980259673092	0.00519329118869421	0.0488765401983426
Merged-chr16-75961255-4	chr16	75961148	75961348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39536.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	8.09341283149364	8.01838628686148	7.91813572044575	8.09528831028299	7.97570870248574	8.35122719872135	8.25973706263879	7.81490763451316	0.101924706736181	0.576197457436484	0.813446739194192
Merged-chr11-79674444-4	chr11	79674367	79674567	+	870.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045898, exon 2 of 3)	non-coding (NR_045898, exon 2 of 3)	619.0	NR_045898	72218.0	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	3.89145613588867	3.97371946722311	3.77495079991583	3.65248229129299	4.15246160236633	4.63957944983486	4.37652105677421	4.31666024134571	1.44661414591626	0.000615083868376878	0.00911535595819234
Merged-chr16-32876889-3	chr16	32876806	32877006	+	880.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027226)	promoter-TSS (NM_027226)	-878.0	NM_001356387	69823.0	Mm.12831	NM_027226	ENSMUSG00000022800	Fyttd1	2010005M05Rik|3830411L18Rik|3830421F13Rik|4933423A17Rik|AI098218|AW539567|C85190	forty-two-three domain containing 1	protein-coding	4.00553665247236	3.95902899252624	3.86320441429019	4.19046228526078	3.71941175826197	3.6999452446175	3.74365924317746	3.9103531580168	-0.725201122402525	0.107484213753894	0.361594614367539
Merged-chr2-165885234-1	chr2	165885134	165885334	+	647.0	f0_c57.idr	promoter-TSS (NM_001252584)	promoter-TSS (NM_001252584)	-396.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	3.31340204624547	3.31641597498553	3.4394341183864	3.20069525461456	3.45111470732315	3.83221334720748	3.42612030530652	4.15409771787318	1.39073676278624	0.00898202683083089	0.0730748300139116
Merged-chr3-104714446-4	chr3	104714376	104714576	+	815.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63071.0	NM_183224	329731.0	Mm.389494	NM_183224	ENSMUSG00000055865	Fam19a3	7530404M11Rik|Sam3|TAFA3|Tafa-3	family with sequence similarity 19, member A3	protein-coding	3.50953576560462	3.1753187216353	3.51002663703789	3.34864918050401	3.47240494873736	3.38999331315835	3.69067408273445	3.5602493935528	0.488031423348	0.338074722255641	0.647782401621467
Merged-chr4-102572264-4	chr4	102572165	102572365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	2205.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	7.66632233142566	7.93084604393274	7.99021834735422	7.3897885345674	8.10419666105119	7.98275991291228	7.86304170414575	7.55524862146298	0.178974942316429	0.399852717227687	0.697931153338137
Merged-chr11-114933753-4	chr11	114933615	114933815	+	907.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199221, intron 1 of 3)	intron (NM_199221, intron 1 of 3)	671.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	3.61534719558892	3.64434409964547	4.02054382369208	3.89896668947352	3.85529320632501	3.79056620561911	3.81800144734959	4.10073828810119	0.247455564990176	0.591473257754328	0.821646191951789
Merged-chr11-59216919-4	chr11	59216825	59217025	+	716.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	8564.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	3.35686488037032	3.50255997518853	3.58952572534377	3.57338158148025	3.51675405273272	3.47144103343755	3.57506849271337	3.95342114009775	0.409466297699919	0.414256758175432	0.709028826079521
Merged-chr12-21370090-2	chr12	21369990	21370190	+	929.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291871, intron 1 of 18)	intron (NM_001291871, intron 1 of 18)	3542.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	3.67787951148983	3.6662297689564	3.39531122260748	3.45268225367202	3.78557501702328	3.68900630598157	3.61195789140938	3.67627741777346	0.464745661208508	0.328779997426311	0.640144325858488
Merged-chr4-133675918-4	chr4	133675801	133676001	+	863.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2735.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	4.23953585599648	4.36482104771129	4.32958397965473	4.49724630585879	4.27745085872363	4.21771743864074	4.26685536164182	4.3692829507337	-0.214636479060263	0.574751944100385	0.812567922099025
Merged-chr6-8770597-3	chr6	8770524	8770724	+	973.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010492, intron 1 of 13)	intron (NM_010492, intron 1 of 13)	7860.0	NM_010492	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	4.57610848610041	4.30541157679908	4.7507046907156	4.72389669712973	4.06175369244143	3.96909040587666	4.59138805140442	4.18473439175427	-0.899474403939289	0.0319882169298709	0.174739916514789
Merged-chr15-75090025-3	chr15	75089933	75090133	+	940.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21904.0	NM_001357693	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	4.07672043633708	4.25352729990595	4.07731458882402	3.60958926683837	4.35833016118687	4.6999437018071	4.64859407868729	4.73480900377225	1.46086181585276	0.000544654407459629	0.00826608871398058
Merged-chr8-84978629-6	chr8	84978489	84978689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008416, exon 1 of 1)	5' UTR (NM_008416, exon 1 of 1)	159.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	8.03603733096126	8.08320789741927	7.62774483396772	7.51010303143714	8.07775520560134	8.30407329085697	8.31128473480838	8.15127568816216	0.490646556210136	0.0127041658021613	0.0935903350892197
Merged-chr10-7269421-3	chr10	7269326	7269526	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57189.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	3.09952297565675	2.98277619079551	2.98926349857453	3.25151944441259	2.84180867298452	2.6072462729233	2.72695355230214	2.86669216035266	-1.49121329372723	0.0246331068729673	0.146923575959909
Merged-chr7-144939805-4	chr7	144939709	144939909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007631, exon 1 of 5)	5' UTR (NM_007631, exon 1 of 5)	116.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	5.86581957531386	6.2224025499362	5.51331808013273	5.62680767623649	6.18300960717536	6.08915497338328	6.16730201941661	5.90929501158023	0.415475346538148	0.129762031774036	0.400958719608618
Merged-chr1-65178337-4	chr1	65178233	65178433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111320, intron 1 of 8)	intron (NM_001111320, intron 1 of 8)	809.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	8.40160095121694	8.61571496419322	9.02556026814729	8.79895874997698	8.61693812586873	8.55327100774832	8.69450181606013	8.44011112728147	-0.190599478219916	0.289506720057521	0.601517859389756
Merged-chr13-65241041-4	chr13	65240976	65241176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-35360.0	NM_175290	97895.0	Mm.315815	NM_175290	ENSMUSG00000032999	Nlrp4f	C330026N02Rik|C86045|Nalp-kappa|Nalp4f	NLR family, pyrin domain containing 4F	protein-coding	6.60484452096693	6.96285195387623	7.17929446544642	6.57619568615126	7.02241726681542	7.34456446721652	6.92220776835413	6.88699705287949	0.289887703675326	0.214872059405053	0.520854730840221
Merged-chr7-7188090-7	chr7	7187935	7188135	+	808.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16682.0	NM_146179	232854.0	Mm.184857	NM_146179	ENSMUSG00000034538	Zfp418	A230102I05Rik	zinc finger protein 418	protein-coding	3.24723693978145	3.28075040771159	3.81805050071739	3.40035796138288	2.77673993654618	3.42272195732028	2.90145109712007	3.18467751343825	-1.38228206490788	0.0352073072613228	0.186016992544069
Merged-chr13-23710630-4	chr13	23710542	23710742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010424, exon 1 of 6)	exon (NM_010424, exon 1 of 6)	212.0	NM_001347493	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	6.13005448037294	6.13740089697709	6.19193963604409	6.27336844837486	6.29490570969441	6.1538707865062	6.30874524596042	6.38808813398452	0.149534506377313	0.501285348684423	0.76915261552077
Merged-chr19-5924124-4	chr19	5924071	5924271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026772, intron 1 of 1)	intron (NM_026772, intron 1 of 1)	645.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	5.64581322852253	5.67824185861085	5.22217719864628	4.90089771296586	5.44506131878266	5.52567796182495	5.29277143005889	5.66656557731355	0.177031848992573	0.591504018223922	0.821651601325705
Merged-chr14-63409390-4	chr14	63409269	63409469	+	861.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	7818.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	3.86057578561168	4.09280529125321	3.96551535360674	4.3020330043731	4.2806512585904	3.86678210042922	3.8461079139444	4.10529282124474	-0.0874545960504061	0.84666157687447	0.941967608044389
Merged-chr11-97408342-5	chr11	97408219	97408419	+	819.806702	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41841.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	3.44206609190567	3.4473939307339	3.20952360182949	3.21026218374259	3.41007192268802	3.55766559074832	3.26020285402367	3.38624872578968	0.284042764655853	0.585841482815317	0.818478990587386
Merged-chr10-34267543-4	chr10	34267452	34267652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14638.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	5.48325033103225	5.65620915412952	5.54037340418494	5.51180362767114	5.57460203347123	5.57143665832808	5.75944895499097	5.61626916079345	0.140582842257962	0.590574009361706	0.821072863885713
Merged-chr1-152555217-4	chr1	152555112	152555312	+	897.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 5 of 17)	intron (NM_016846, intron 5 of 17)	70005.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.21935001878336	4.48176051492	4.26931158052666	4.80933335937772	4.43102295251329	4.62475481635096	4.82794288410493	4.53262416290094	0.264075349193534	0.513601859864435	0.776599965656002
Merged-chr11-51927390-4	chr11	51927276	51927476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40255.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	7.11755951050008	7.16771371261511	7.84566310613159	7.66910822300498	7.23038659835806	7.05695889464402	7.2097352566094	7.366324571931	-0.364494240937206	0.10932561176331	0.365153157665133
Merged-chr16-20088002-4	chr16	20087912	20088112	+	917.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9542.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	4.41262521265928	4.1885251228285	3.98211296903764	4.19190309229314	4.65527493963721	4.3662202330084	4.43264172951547	4.32642084218979	0.616312985506129	0.114921036364854	0.375158890451932
Merged-chr17-13683996-4	chr17	13683909	13684109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76532.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	7.37417100566076	7.3135588244023	7.36501188374368	7.52452205276791	7.71279157840878	7.73588330596859	7.87009231713123	7.75952789862463	0.480745903583848	0.00484093589450745	0.0463946379473738
Merged-chr14-61309778-4	chr14	61309684	61309884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177337)	promoter-TSS (NM_177337)	31.0	NM_177337	219144.0	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	7.10699759718223	7.32850697206517	6.94963281149928	6.98255734575954	6.94914962160547	6.97510241106097	6.96525543195738	6.73283307672685	-0.259614734383862	0.197468587521018	0.49888608614888
Merged-chr9-43106062-4	chr9	43105965	43106165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027144)	promoter-TSS (NM_027144)	-347.0	NM_027144	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	6.44403456997802	6.27751075445802	6.20019612621427	5.90538554641019	6.70097850354132	6.89572304437672	6.41209678616179	6.63079693076571	0.688972130109057	0.00416885886199768	0.0413972105103422
Merged-chr6-7733286-4	chr6	7733187	7733387	+	929.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-40105.0	NM_012055	27053.0	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	4.53983223042438	4.6194436345952	4.54054469782903	4.58552965264583	4.80738738317333	4.49158531550994	4.71071384505074	4.53766316940274	0.172954328022624	0.621311880105934	0.837757076551181
Merged-chr17-55726400-4	chr17	55726289	55726489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13753.0	NR_151542	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	6.16157261491034	6.08180400595066	6.0447267216588	6.1918186730738	5.65306220876037	5.92059632301346	5.8843903756923	5.65853804400321	-0.557534935513536	0.0222077328886242	0.137344191540646
Merged-chr14-24490656-4	chr14	24490551	24490751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207635)	promoter-TSS (NM_207635)	-27.0	NM_207635	20088.0	Mm.16775	NM_011297	ENSMUSG00000025290	Rps24	-	ribosomal protein S24	protein-coding	7.06940381003268	7.16577141538282	6.95243180294626	7.20772709265815	7.43215224947124	7.4761827572633	7.53320919407638	7.49618141211267	0.499372157258	0.00528860375571921	0.0496161232013098
Merged-chr7-114894276-3	chr7	114894160	114894360	+	785.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54390.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	3.26488526562407	3.29163231510555	3.46362987056669	3.48052431022588	3.91282542083181	3.81035261712382	3.72451419685389	4.12187040754816	1.57490249538936	0.00160874638148156	0.0197497341647941
Merged-chr1-133856398-3	chr1	133856322	133856522	+	771.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50751.0	NM_054076	269120.0	Mm.59985	NM_054076	ENSMUSG00000010311	Optc	-	opticin	protein-coding	3.1221410037307	3.07262964357939	3.53708425137501	3.45294598100588	2.90571358335067	2.95993194394679	3.17040463471589	3.12097392351668	-1.09227734827508	0.0699958808618784	0.283145987944285
Merged-chr10-67189160-3	chr10	67189072	67189272	+	694.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242396, intron 1 of 24)	intron (NM_001242396, intron 1 of 24)	3422.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	3.70695546983243	3.7973717848973	3.37413178390792	3.429189728098	3.66837742353122	3.55077298282367	3.53771537639053	3.65546210572928	0.0758442494453574	0.878511352729131	0.954592855248478
Merged-chr13-97340665-4	chr13	97340558	97340758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94312.0	NR_110432	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	3.95447053183656	4.39375868397691	4.06819106589225	4.49719175808335	4.47159707758555	4.29941660711635	4.67757904744023	4.59387489717736	0.58048038550964	0.163124180035305	0.452706698401916
Merged-chr14-70572628-1	chr14	70572528	70572728	+	902.0	f0_balb.idr	3' UTR (NM_021877, exon 20 of 20)	3' UTR (NM_021877, exon 20 of 20)	-5196.0	NM_153136	213484.0	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	3.62719234169749	3.91380027789258	4.03295196925218	4.24827906516552	3.00686753251015	3.07402466070933	3.25423139267322	3.19281392940712	-3.36849894724378	4.2179188903908e-07	1.58682478170786e-05
Merged-chr17-12916275-4	chr17	12916176	12916376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013686)	promoter-TSS (NM_013686)	-53.0	NM_001290712	21454.0	Mm.229342	NM_013686	ENSMUSG00000068039	Tcp1	AI528772|CCT|Cct1|Ccta|TRic|Tcp-1|Tp63|c-cpn|p63	t-complex protein 1	protein-coding	9.35150500912884	9.58297650787511	9.50700691678041	9.62497130846258	9.24626710667057	9.44286919912965	9.56248367435867	9.27448330183048	-0.168218003221081	0.266155293103627	0.57789846891047
Merged-chr16-30602998-3	chr16	30602917	30603117	+	817.383362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177632)	TTS (NM_177632)	3294.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	3.63077415050435	3.8562739251752	3.7805961552848	3.73459554749322	3.4645490666666	3.51484242103174	3.50802644558802	3.51925780993104	-0.819643969629091	0.0888308182469571	0.325234751916062
Merged-chr6-129559438-4	chr6	129559301	129559501	+	984.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18885.0	NM_153590	243655.0	Mm.30968	NM_153590	ENSMUSG00000050241	Klre1	Klre-1|NKG2I	killer cell lectin-like receptor family E member 1	protein-coding	3.93489350025816	4.49706250945918	4.46203660853264	4.45469700953058	4.48975640928332	4.27789959597474	4.36104782165382	4.19880424276886	-0.0508849424507344	0.900734186390224	0.963206010470881
Merged-chr16-32202306-3	chr16	32202204	32202404	+	984.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	22504.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	3.69925225215259	4.18289643229277	3.39660330917783	3.18290229940867	3.92815313131322	3.97665041099986	3.78756266923243	3.64231049757134	0.476977684134067	0.393797707249102	0.692957404308624
Merged-chr14-79390721-4	chr14	79390620	79390820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025832)	promoter-TSS (NM_025832)	-52.0	NM_025832	66897.0	Mm.24425	NM_025832	ENSMUSG00000022020	Naa16	1300019C06Rik|Narg1l	N(alpha)-acetyltransferase 16, NatA auxiliary subunit	protein-coding	7.76029580154572	7.65967234519691	7.64157183917783	7.70555769280705	7.48477861016134	7.52663584910746	7.51735811635689	7.5127231006347	-0.242863260678631	0.138112432921628	0.413489163530117
Merged-chr1-85840544-4	chr1	85840460	85840660	+	756.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355046, intron 5 of 9)	intron (NM_001355046, intron 5 of 9)	46543.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	4.08561313510757	3.87466236012234	3.80142146581977	3.49000867683947	4.08187813022563	3.81022626623042	3.93453296170748	3.90124572620781	0.354896314009953	0.449701417267684	0.734839862538956
Merged-chr17-34180711-4	chr17	34180596	34180796	+	864.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6634.0	NM_013585	16912.0	Mm.390983	NM_013585	ENSMUSG00000096727	Psmb9	Lmp-2|Lmp2	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	protein-coding	4.0607364591613	4.0542611640001	4.32636857018408	3.87315463063823	5.33619313598945	4.46000181054642	5.04774937019879	4.62365731554552	1.90172820969478	3.72062934993308e-06	0.000114101971778926
Merged-chr4-155223270-4	chr4	155223151	155223351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011385)	promoter-TSS (NM_011385)	-716.0	NM_001357191	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	8.63571523245965	8.72298176960508	8.51626854589621	8.0994895102016	8.63697954514581	8.80173480763906	8.53407869084621	8.43018243619486	0.12477124096304	0.512704476920506	0.776001360098765
Merged-chr14-54417782-4	chr14	54417680	54417880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253679)	promoter-TSS (NM_001253679)	-78.0	NM_011405	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	6.62088050211543	7.36431032739851	6.72612029646542	5.84458389299255	6.82877341014089	6.99858234965782	6.3323513477614	5.88425430666671	-0.248556511223982	0.64957049847622	0.852797294781466
Merged-chr11-19929310-4	chr11	19929212	19929412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	4870.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	5.99122617055485	6.00608696878617	5.62984692807423	6.04081985643334	5.62505779262837	6.20718914680897	5.85261744989727	5.59765998100441	-0.161210458054198	0.561555404679917	0.80494560024742
Merged-chr1-191098381-4	chr1	191098277	191098477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030060)	promoter-TSS (NM_030060)	-37.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	7.04455704105402	7.42199280463626	6.98471518754764	6.99548225810995	6.79339861292405	7.04367400255358	6.79003634509111	6.47950875942943	-0.464427845304368	0.0369716919228985	0.191598693802693
Merged-chr12-12300348-4	chr12	12300240	12300440	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	38201.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	4.869978038321	5.32637330409077	5.08508995446737	4.793418822892	5.19832878847508	5.04756248578711	4.92263060797511	5.29280115040696	0.191610184902623	0.561448775263075	0.80494560024742
Merged-chr11-74638110-4	chr11	74638017	74638217	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001013784, exon 4 of 4)	exon (NM_001013784, exon 4 of 4)	-11378.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	5.2908863484982	5.07387763892791	5.08227390947946	5.07927354904356	5.06050113569978	5.08224610606742	4.84704985488606	4.97676953845907	-0.255253433185432	0.40729420968172	0.703608828263358
Merged-chr8-117543131-3	chr8	117543033	117543233	+	703.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	44858.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	3.9995541753646	3.79454944607871	3.59072556061766	3.66662938082971	4.16014537705768	3.82469358811485	3.69141302505097	3.75770347550067	0.335217065050894	0.478923219612018	0.754764349988147
Merged-chr12-81833262-3	chr12	81833153	81833353	+	767.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-26777.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	3.57363061856465	3.53214028653022	3.67596129065558	3.47957626199285	3.68919840796723	3.69066293337566	3.45063901328962	3.27645186176078	-0.0596952605895729	0.905753957546453	0.964985195991603
Merged-chr15-86206629-4	chr15	86206522	86206722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7837.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	5.86002430613115	6.01141165220912	6.41092725179474	6.58150039172837	5.81335331879733	5.9105748557735	6.01316994242825	5.85688819049762	-0.572861022813664	0.0360080760752562	0.188526579401299
Merged-chr12-38860319-3	chr12	38860216	38860416	+	677.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347379, intron 10 of 11)	intron (NM_001347379, intron 10 of 11)	76605.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	2.81921812060833	2.81727990322022	2.93235665595801	2.86661653111483	2.44252193236474	2.51053488859594	2.86545019155599	2.40697122291824	-1.52364990910527	0.0385692019373018	0.197051193274132
Merged-chr16-15637483-4	chr16	15637391	15637591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011159)	promoter-TSS (NM_011159)	-91.0	NM_008565	17217.0	Mm.1500	NM_008565	ENSMUSG00000022673	Mcm4	19G|AI325074|AU045576|Cdc21|Mcmd4|mKIAA4003|mcdc21	minichromosome maintenance complex component 4	protein-coding	8.74946987451326	8.97252988180245	8.8414765932683	8.80131584090599	9.24927652493729	9.04697895997279	9.05885297108679	8.73242787865543	0.241902373700971	0.142641511279091	0.420382582450082
Merged-chr13-37718531-4	chr13	37718415	37718615	+	981.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-107523.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.19701835713174	5.36353557668822	5.03562070824503	4.99098240892994	5.0787813842417	4.81562767891165	4.97649567666076	5.36471589703357	-0.135638566003351	0.676269753941154	0.867092001375939
Merged-chr7-139281307-3	chr7	139281252	139281452	+	791.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32870.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	3.4260712375109	3.0963879300217	3.25616947451997	3.26703555234213	3.62217000016606	3.3054757011567	3.30316855460578	3.47662029867344	0.619322441584821	0.242421684625236	0.553144192657145
Merged-chr2-129342258-3	chr2	129342168	129342368	+	774.5	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27634.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	4.37392013930214	4.19330788199629	4.0557516865031	4.1509928197784	4.98306767944554	4.91562594170648	4.72022771931175	5.02554173517217	1.59017045120974	8.41006614951675e-06	0.000235862922953685
Merged-chr10-80539216-4	chr10	80539102	80539302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026094)	promoter-TSS (NM_026094)	-78.0	NM_026094	67331.0	Mm.52511	NM_026094	ENSMUSG00000003341	Atp8b3	1700042F02Rik|1700056N23Rik|ATPIK|SAPLT	ATPase, class I, type 8B, member 3	protein-coding	5.6860846138195	6.15690785560501	5.71308617185211	5.46544050859883	5.91399637520121	5.75495426333782	5.97914673953313	5.80796333839106	0.159920408499531	0.568840210211863	0.809077558202186
Merged-chr8-105349092-7	chr8	105348941	105349141	+	912.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081332, exon 1 of 16)	5' UTR (NM_001081332, exon 1 of 16)	783.0	NM_001081332	277973.0	Mm.334766	NM_001081332	ENSMUSG00000014786	Slc9a5	Gm696	solute carrier family 9 (sodium/hydrogen exchanger), member 5	protein-coding	3.74833867146798	3.36568456680081	3.24542722057556	3.21956367392497	3.61755287813524	3.91628150209271	3.36272250300021	3.59952713911471	0.755969866852682	0.157380329661545	0.443914186050291
Merged-chr5-65136386-4	chr5	65136284	65136484	+	992.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359401, intron 1 of 5)	intron (NM_001359401, intron 1 of 5)	5153.0	NM_175174	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	5.26273640121077	5.17665502198712	5.26364252042652	4.74438648555628	5.27416623836615	4.98328987056342	5.2666231159228	5.42682821158575	0.263703865712351	0.41910417952528	0.712251159515261
Merged-chr3-106573384-4	chr3	106573278	106573478	+	967.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025582, intron 6 of 6)	intron (NM_001025582, intron 6 of 6)	-25576.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	5.30097496978871	4.83829072219371	6.14266284908282	5.37831894840584	5.66447139659298	5.00998976396501	5.0420060797601	5.16916540108281	-0.425465411036042	0.287999971743786	0.599928299348872
Merged-chr18-76237496-4	chr18	76237407	76237607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-4194.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	6.4766890199425	6.17091135602489	6.12454341008471	6.35125417036898	6.43709051352328	6.40375109090257	6.29040142187901	6.42364191150338	0.148869895901427	0.503944942570859	0.770592637321386
Merged-chr3-122419978-4	chr3	122419899	122420099	+	904.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013867, exon 1 of 12)	5' UTR (NM_013867, exon 1 of 12)	242.0	NM_013867	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	4.88611598807733	4.41783144593338	4.6927454826021	4.54018796038986	4.35713232827253	4.1418085811581	4.31080007912029	4.41699576849533	-0.74542070421112	0.0535429388649427	0.241541027944534
Merged-chr18-64991486-6	chr18	64991363	64991563	+	867.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-32064.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	3.69141774330249	3.60230601374536	3.69192637078337	3.72516562871314	3.77251666016095	3.80945548786881	3.82386680304319	3.58067048636145	0.210304429890008	0.645846416501479	0.851009868382583
Merged-chr16-17812369-3	chr16	17812273	17812473	+	859.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15091.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	3.20441555662788	3.32415471828251	3.14551620930086	3.11080710772594	3.04184754405009	3.19304328218339	3.19290542995917	3.36551119311519	0.0144996087284131	0.978993266778485	0.992589620762717
Merged-chr18-65680268-4	chr18	65680137	65680337	+	992.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-18031.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	5.02174781696299	5.35065517304098	5.08994071083147	5.39253964734091	5.03490590832275	4.8023254379792	5.1285288150891	4.79321074694765	-0.542610922090304	0.0930557010475494	0.333716294940811
Merged-chr7-80782433-4	chr7	80782357	80782557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	20874.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	7.34966740234134	7.34758976413121	7.44474887111143	7.2257764486507	6.93382563578872	7.2078713782529	6.63472034231221	7.03815552374141	-0.509388413727881	0.0119171121014385	0.0894304820525346
Merged-chr9-61373049-3	chr9	61372921	61373121	+	886.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001083927, exon 1 of 20)	5' UTR (NM_001083927, exon 1 of 20)	655.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	3.71467199005272	3.68280919440338	4.19405344061839	3.6715283017575	4.10536046774431	4.00067990738949	3.75696132129743	4.1508002357952	0.525477484691625	0.257446135454529	0.569250985539994
Merged-chr8-110231983-4	chr8	110231859	110232059	+	841.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13999.0	NM_146215	234728.0	Mm.275341	NM_146215	ENSMUSG00000046441	Cmtr2	AU022703|C730036L12Rik|Ftsjd1|MTr2	cap methyltransferase 2	protein-coding	3.81136302034921	4.41794526301459	4.19284350245094	3.78961272677171	4.49911119678197	4.36781343011674	4.60667526676036	4.28151649110707	0.913125385451384	0.0339584432082114	0.181834652006115
Merged-chr9-107312976-4	chr9	107312871	107313071	+	969.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16312.0	NM_001317354	12700.0	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	4.94337599947349	5.14931764298426	4.98319633863372	4.13810366781633	5.63027709151667	5.58121104420052	5.64968850150824	5.74033878402703	1.48373521321804	3.73224335796969e-05	0.000875889713079211
Merged-chr7-109838817-4	chr7	109838705	109838905	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020052, intron 7 of 21)	intron (NM_020052, intron 7 of 21)	26874.0	NM_020052	56788.0	Mm.40447	NM_020052	ENSMUSG00000007279	Scube2	4932442O19Rik|Cegf1|Cegp1	signal peptide, CUB domain, EGF-like 2	protein-coding	5.56371678922726	5.82421668751815	5.80925035437087	6.0040916268029	6.3612241072513	5.41094954994519	6.06451485706764	6.35661755682566	0.457892019943892	0.131222418964333	0.403257278999947
Merged-chr11-70452250-4	chr11	70452156	70452356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025397, exon 2 of 3)	exon (NM_025397, exon 2 of 3)	325.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	7.77021868279685	7.91469663483359	7.07159341439785	7.40651679259819	7.347665642529	7.43648167189759	7.42720948935801	7.34022576222904	-0.257857221697714	0.24826186988372	0.559336071774142
Merged-chr2-158498428-4	chr2	158498329	158498529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291138, exon 30 of 30)	3' UTR (NM_001291138, exon 30 of 30)	-4183.0	NM_145635	246747.0	Mm.28800	NM_145635	ENSMUSG00000044405	Adig	SMAF-1|Smaf1	adipogenin	protein-coding	6.21848781177316	5.68999208873978	5.86311784289472	5.8206558776002	5.70881615276317	5.64140230898821	5.73867778212022	5.88163524505792	-0.259056579103237	0.327381041532138	0.638954076095861
Merged-chr11-103117973-2	chr11	103117873	103118073	+	782.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_138753, exon 1 of 1)	exon (NM_138753, exon 1 of 1)	1648.0	NM_138753	192231.0	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	2.77182356986272	2.91617933261503	2.77216589279813	2.71361405391198	2.62230965761189	2.52905417377179	2.70111960965371	2.77078144159399	-0.675205761637498	0.303314901546915	0.615934402989429
Merged-chr8-41218072-3	chr8	41217995	41218195	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B3A_MM|LTR|ERVK	-2939.0	NM_145594	234199.0	Mm.277955	NM_145594	ENSMUSG00000031594	Fgl1	Mfire1	fibrinogen-like protein 1	protein-coding	3.4794732004515	3.42614598888347	3.47993833016506	2.45673965388778	5.32610600879426	5.44358523076582	5.68830078532227	5.18451213256653	8.6337234744448	3.43400712653565e-23	1.75848340474591e-20
Merged-chr2-27515152-4	chr2	27515007	27515207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080848)	promoter-TSS (NM_080848)	-40.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	6.40970297205665	6.37969918301587	5.40739569652785	6.21303080383512	6.55071833415068	6.4246006015691	6.41118147709245	6.47220868541118	0.452605079038736	0.106512318358387	0.359821561861966
Merged-chr18-61571015-6	chr18	61570930	61571130	+	982.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357500, intron 4 of 9)	intron (NM_001357500, intron 4 of 9)	15757.0	NM_146087	93687.0	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	4.18608782564574	4.26793930199148	4.41565633435217	4.31332278929939	4.52156478702011	4.58683201587745	4.30974620820851	4.53266040160399	0.449788459834274	0.225293174426718	0.533652330499637
Merged-chr5-148739338-4	chr5	148739229	148739429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2511.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	6.02036016816638	5.90520424858981	6.0932260100141	5.53832986769834	7.12063671913701	7.20266409953576	7.28613889907962	6.9986113752646	1.8644535985668	3.29709081411152e-16	6.48297312313934e-14
Merged-chr1-152540717-4	chr1	152540636	152540836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 9 of 17)	intron (NM_016846, intron 9 of 17)	84481.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	7.02574200808395	7.61427983446545	7.19608948055848	7.29976786682591	7.44780210848739	7.44976460991646	6.88404706626056	7.25705646379059	-0.0315847876646127	0.887315984933869	0.957758715873797
Merged-chr6-115491445-4	chr6	115491346	115491546	+	806.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-53258.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	3.94857885489138	3.50152118396088	3.74676035765446	3.31547338258967	3.68607067536656	4.16651826282627	3.67600031228854	4.31024338313586	0.988865155113847	0.0563825914013935	0.248637412388315
Merged-chr5-129846971-4	chr5	129846869	129847069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026445)	promoter-TSS (NM_026445)	-21.0	NM_026445	67902.0	Mm.103546	NM_026445	ENSMUSG00000025538	Sumf2	2610040F05Rik	sulfatase modifying factor 2	protein-coding	6.33604459432114	6.16320304516031	6.39662772889755	6.58265391890166	7.41170436025019	7.01183178886988	7.25294208406664	7.17498394336964	1.17012238556192	7.73190755301734e-08	3.3826026288643e-06
Merged-chr13-60660843-4	chr13	60660721	60660921	+	988.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	58610.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	5.90008923693519	5.90819561760108	6.02399734311315	6.04893909484814	5.21106401843404	5.89129061320972	5.41150080708842	5.16070744751919	-0.895988868810471	0.00207339078014583	0.0240439691006843
Merged-chr8-56615264-4	chr8	56615151	56615351	+	767.983337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64117.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	4.05324191045091	4.2137200910964	4.55026511776491	4.09430035852725	3.973625003236	4.126367373265	4.22271518402703	4.19471663882721	-0.269992258365078	0.519541659170891	0.780161932409124
Merged-chr8-22934619-4	chr8	22934507	22934707	+	837.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 16 of 17)	intron (NM_001081149, intron 16 of 17)	-40229.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	4.95716478134882	4.8724309746021	5.08148612714707	5.23076188327512	4.29742653552961	4.3696491624571	4.37823671777654	4.88805040326036	-1.16604249267008	0.00175493734053474	0.0211397334509937
Merged-chr12-32435403-2	chr12	32435331	32435531	+	771.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	56642.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	2.96834182608659	2.87176161514207	3.02846167894466	2.91229422641695	2.911527812796	3.13827708437782	2.9581486209048	2.96723039157652	0.212674558506381	0.714157968448515	0.885697313573214
Merged-chr15-27884556-4	chr15	27884431	27884631	+	961.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 9 of 56)	intron (NM_001081302, intron 9 of 56)	141317.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	4.52233552902238	4.62305221515787	4.38158382397423	4.77223788109742	4.73287615272175	4.60994659669209	5.03724267254013	5.14367614960251	0.618026844619275	0.0913701077867766	0.330351648405291
Merged-chr11-21091178-4	chr11	21091091	21091291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023324)	promoter-TSS (NM_023324)	-133.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	8.71134233673436	8.92817788857519	8.54288770379933	8.55877836024355	8.69833445755189	9.13570228430185	8.83361156095938	8.54719711599261	0.158099307763458	0.392918942318789	0.692205902019298
Merged-chr1-153914074-4	chr1	153913986	153914186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14157.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	6.64489822872401	6.35956366061797	6.86338330262651	6.78294265761073	6.23827501184287	6.36365318105279	6.42098391788847	6.4143483340059	-0.473269596845754	0.036064997864209	0.188763972240393
Merged-chr18-79995795-4	chr18	79995643	79995843	+	949.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3-int|LTR|ERVL-MaLR	-51152.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	4.62414741186256	4.20806230481944	4.47550610145481	3.97853826467562	4.48353301404291	4.52352198114303	4.2868942840726	4.25736958802587	0.159812238305643	0.70000014555257	0.879016819157179
Merged-chr2-145740894-4	chr2	145740808	145741008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 3 of 3)	L3|LINE|CR1	39713.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	8.6616267494821	8.66831975235856	8.94820409869547	8.71571829836974	8.54507753201167	8.53919759959479	8.67073735966335	8.28709872160582	-0.293213061572729	0.0722094493158429	0.288785054098909
Merged-chr4-9642241-4	chr4	9642148	9642348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	1469.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	5.55117490597712	5.84838735464416	5.02596288545744	5.53987912752602	6.14061414808903	6.05653571338881	6.34055693420311	5.51901229382278	0.844733610655654	0.00787740966964379	0.0664816389465942
Merged-chr17-37276092-4	chr17	37275987	37276187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	4331.0	NM_146515	258508.0	Mm.377544	NM_146515	ENSMUSG00000061972	Olfr99	MOR156-1	olfactory receptor 99	protein-coding	6.94264309342483	6.52778633154452	7.13479273061391	7.00782323388826	7.16353215618111	6.76690970076759	6.97132347047678	6.96445561168556	0.0812715932954473	0.713207969878023	0.88527884500467
Merged-chr14-47473096-4	chr14	47472980	47473180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030236, intron 1 of 1)	CpG	519.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	6.58713609085277	7.15262359071814	6.73347803385756	7.00207400567537	7.05843484525307	6.73212538587158	7.04221843373382	7.16222103685982	0.157666616214489	0.47758742460541	0.753751558669368
Merged-chr10-61680259-4	chr10	61680182	61680382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358488)	promoter-TSS (NM_001358488)	-3.0	NM_001358488	20224.0	Mm.391794	NM_009120	ENSMUSG00000020088	Sar1a	1600019H17Rik|Sara|Sara1	secretion associated Ras related GTPase 1A	protein-coding	8.67375710265853	8.80484885916777	8.79130279833509	8.67396006454853	9.01604998950588	9.09443255080143	9.11841816156583	8.89200928691364	0.369649947890499	0.0102885202524227	0.080616795557183
Merged-chr14-76152265-3	chr14	76152168	76152368	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41377.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	5.20426369112732	5.27061703363594	5.86904981780533	5.41862307504696	5.04125460786691	5.44669429137682	5.27585154414798	5.55143641821171	-0.229011535921073	0.475136232477047	0.75208784866875
Merged-chr3-81932658-4	chr3	81932556	81932756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177662)	promoter-TSS (NM_177662)	55.0	NM_177662	229445.0	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	5.63177660041577	5.84070447261059	6.39617791162383	6.25025710557209	6.04592330883151	5.89552705201045	6.17608633149953	5.91405039486567	-0.0923202397516649	0.739154708970277	0.897175752194117
Merged-chr11-106614451-4	chr11	106614354	106614554	+	999.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1524.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	5.94983255371738	5.4320411669712	5.44855991817704	6.03662567835083	5.75202321538874	5.32075169777512	5.81294763620201	5.9671418867845	-0.0374084676910224	0.90355783463943	0.964287824952031
Merged-chr13-41932520-3	chr13	41932424	41932624	+	579.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66609.0	NR_033545	100038577.0	Mm.387093	NR_033545	ENSMUSG00000113856	Gm10790	-	predicted gene 10790	ncRNA	2.98105007896824	2.67122317068826	2.98149303122966	2.87105019486743	2.53633196197703	2.6683296527588	2.4890049038392	2.49377316624068	-1.83479877576995	0.0111048476972902	0.0850243537187152
Merged-chr19-46503623-8	chr19	46503588	46503788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	2040.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	5.63986362394176	5.70608478204589	5.58641846458887	5.85404916761386	5.60082286472193	5.9885765594312	5.80894854419241	5.90115547704734	0.177693864586237	0.499712815438325	0.768462569461275
Merged-chr4-152039333-4	chr4	152039228	152039428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028727)	promoter-TSS (NM_028727)	7.0	NM_028727	74035.0	Mm.275803	NM_028727	ENSMUSG00000028948	Nol9	4632412I24Rik|6030462G04Rik|AI449622|AW490720	nucleolar protein 9	protein-coding	6.724893151943	6.68885897261551	6.6005772952515	6.86405994465543	6.89299188244995	7.2398306773699	6.95857002924322	6.5106504796319	0.27077727053288	0.232187708279541	0.541811916455085
Merged-chr17-24171944-4	chr17	24171837	24172037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2259.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	6.82499186153674	7.27284791733078	6.76481163779072	6.6993184500713	7.58403635319175	7.56249085406643	7.44104746395301	7.47295713208495	0.829263298523939	6.08513806006967e-05	0.00133642098728078
Merged-chr1-26688133-3	chr1	26688018	26688218	+	638.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033764)	promoter-TSS (NM_001033764)	-658.0	NM_001033764	210940.0	Mm.297614	NM_001033764	ENSMUSG00000073722	4931408C20Rik	-	RIKEN cDNA 4931408C20 gene	protein-coding	3.53128495696565	3.30362566447181	3.53179328721714	3.43235941493451	3.38678392220201	3.5400117065942	3.23714635496914	3.36723965881042	-0.222104152957978	0.665568031689228	0.861482624541591
Merged-chr8-22757584-4	chr8	22757496	22757696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008872)	promoter-TSS (NM_008872)	-126.0	NM_008872	18791.0	Mm.154660	NM_008872	ENSMUSG00000031538	Plat	AU020998|AW212668|D8Ertd2e|tPA	plasminogen activator, tissue	protein-coding	6.81540706142752	6.68185201198113	6.70709900905276	6.73926392584497	6.36126815417548	6.46392322996667	6.36794930951541	6.37771892395632	-0.502985276101599	0.0137262528407512	0.0986292096660437
Merged-chr17-26464170-2	chr17	26464099	26464299	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44273.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	2.97239109343816	2.868309009119	2.56084266458271	2.81430264158093	2.85820947862104	3.02168964926386	2.90185550453394	3.18735462410185	0.794686297694289	0.209755513996495	0.514248879921348
Merged-chr19-45117057-3	chr19	45116968	45117168	+	785.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33647.0	NM_021901	21908.0	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	3.82472203032982	3.67437700126188	3.51067624787039	3.82546792426538	3.73376667817238	3.62473552666946	3.66294031517468	3.67548672273653	-0.139421537572302	0.766882494528706	0.908757742622047
Merged-chr9-75542139-3	chr9	75542038	75542238	+	879.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	17519.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	3.24340312107057	3.25993093197639	3.24377212457388	3.22212554870943	4.14097040294379	3.42862984452563	3.48117261717907	4.08060785504647	1.88554211736442	0.000501670554167552	0.00773869607985882
Merged-chr10-60341354-4	chr10	60341289	60341489	+	842.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 37 of 68)	MTEb|LTR|ERVL-MaLR	-5462.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	4.00761471238882	4.17000236921507	4.05781920538526	3.93183385043183	4.0129155726784	4.23053724355896	4.08779389573733	4.35697199726193	0.350022144112001	0.395034831764344	0.694006264372866
Merged-chr10-40437375-3	chr10	40437276	40437476	+	962.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291817, intron 4 of 11)	L1_Mus2|LINE|L1	88068.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	4.57500425723934	4.37085073297031	4.95125837383251	4.33875743490242	3.96384663003828	3.92347284250681	4.31522973528802	4.19275230094745	-1.1349184930475	0.00873408552473816	0.0715812865360205
Merged-chr9-13559040-4	chr9	13558962	13559162	+	803.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60927.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	4.09150923949276	4.07775425801076	3.84587553756517	3.97767835740489	4.18664916440602	4.01948774131596	3.9822463938414	3.94759928997773	0.11778935533443	0.779417840281334	0.91394323833457
Merged-chr2-118900467-3	chr2	118900377	118900577	+	777.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1138.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	3.90021485607213	3.87220718717315	4.08112846447766	3.7487154457582	3.70854319069883	3.80816497689665	3.88427737870993	3.94617569824817	-0.173785812831417	0.697844421670864	0.878035052717631
Merged-chr4-148140372-8	chr4	148140231	148140431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027985)	promoter-TSS (NM_027985)	-159.0	NM_027985	71890.0	Mm.9648	NM_027985	ENSMUSG00000029003	Mad2l2	2310033C13Rik|G1-453-4|MAD2B|REV7|repro22	MAD2 mitotic arrest deficient-like 2	protein-coding	6.69310145350862	7.10305206894171	7.67613434744926	6.70767781930257	6.74399512716576	7.14138362746636	6.67577477656101	6.94656293032966	-0.301823386984743	0.270287176160873	0.582146299683939
Merged-chr1-74392659-4	chr1	74392576	74392776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153088, intron 1 of 6)	intron (NM_153088, intron 1 of 6)	1067.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	5.9071689489789	5.73943990041223	6.77895515195707	5.98374365284667	6.38294562219129	6.24686253524057	6.48686053315868	5.95221072871429	0.183245375676243	0.551766487399323	0.799073691139046
Merged-chr1-82724399-3	chr1	82724296	82724496	+	860.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310699)	promoter-TSS (NM_001310699)	-494.0	NM_001310697	75734.0	Mm.396863	NM_029409	ENSMUSG00000026150	Mff	5230400G24Rik|AI314724	mitochondrial fission factor	protein-coding	3.43426833556078	3.58677855904189	3.49082784046533	3.55025088429019	3.41722010033287	3.5485195355839	3.42207347054564	3.59412258723745	-0.0879345336040993	0.857722028000811	0.946392149155271
Merged-chr15-98677589-4	chr15	98677483	98677683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172612)	promoter-TSS (NM_172612)	-122.0	NM_172612	223881.0	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	7.99647057537981	8.23815232418118	7.94948537567844	7.54122981932571	8.25493491682518	8.07686431436698	8.07544649701196	7.75462149275408	0.13880376903007	0.506587659788591	0.7723270012871
Merged-chr16-44991144-4	chr16	44991038	44991238	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47460.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	5.79278059920046	5.55966808962578	5.98022413794048	5.98204443887775	5.20755807989007	5.66830052753157	5.1466508140353	5.01460645607314	-0.978014451885103	0.0012606452663063	0.0161980683869312
Merged-chr7-105400192-4	chr7	105400083	105400283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242363)	promoter-TSS (NM_001242363)	-129.0	NM_001242363	74349.0	Mm.30254	NM_199009	ENSMUSG00000044465	Fam160a2	4632419K20Rik|6530415H11Rik|FHIP	family with sequence similarity 160, member A2	protein-coding	9.28251092344026	9.43103570556328	9.63631572301395	9.42702430769	9.32095984388747	9.48238411937246	9.50774999908676	9.28126178001368	-0.0607559671461667	0.684799845112745	0.870914954532591
Merged-chr16-29579325-4	chr16	29579227	29579427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199177)	promoter-TSS (NM_001199177)	-7.0	NM_133752	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	7.55799054144113	7.73790762426128	7.47600911890716	7.43873822427609	7.51400664058576	7.7714425316545	7.82870067145022	7.35114842631181	0.0959301851978525	0.618653638869042	0.836039000482598
Merged-chr13-25854651-4	chr13	25854560	25854760	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31A|LTR|ERV1	111656.0	NR_045062	100503530.0	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	-	predicted gene 11351	ncRNA	4.76140696913623	4.3334861466758	4.86816281087003	4.87583671671978	4.81693880429253	4.69577719350158	4.84457500108972	4.56032804679074	0.00767109708311441	0.983095641010576	0.993953109026111
Merged-chr7-30413829-4	chr7	30413739	30413939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011662)	promoter-TSS (NM_011662)	51.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	7.10597982106092	6.77514686495986	7.19430096328279	6.75439580515654	6.78618683312952	6.57878857828424	7.17897248137889	6.95908264464509	-0.0937031736817237	0.683489145678658	0.870336575552993
Merged-chr3-54358573-4	chr3	54358460	54358660	+	908.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2547.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	3.9568123627243	4.03915161153562	3.90731639164948	3.82419920795093	3.59604665584878	3.92241247107316	4.24138028894919	4.13752995733511	0.167301615825128	0.716437513474137	0.8866074790069
Merged-chr3-68976230-4	chr3	68976148	68976348	+	954.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026641, intron 5 of 19)	intron (NM_026641, intron 5 of 19)	28322.0	NM_026641	68259.0	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	4.88339026966161	4.85026558822233	4.95374363044471	5.34963966080024	4.72835841894958	4.94687646639522	4.74986660001224	4.5580159090895	-0.597609972674371	0.0895161284143899	0.326659887557814
Merged-chr8-36685471-4	chr8	36685299	36685499	+	937.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	47655.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	3.78547695899062	3.40490188262083	3.91677534718546	3.33294584485488	3.65265936774624	3.33228854793178	3.67473910226992	3.41384615428219	-0.298018133803677	0.581672720491798	0.816420227529328
Merged-chr8-86893757-3	chr8	86893627	86893827	+	837.688904	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8469.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	4.03798467749432	3.58718974577166	3.46079645847191	3.66982743841945	3.61216500819865	3.80287088663355	3.32279587554195	3.51837968607086	-0.403416931635073	0.436895576877388	0.725380566503129
Merged-chr18-62192230-4	chr18	62192138	62192338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12138.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	5.84545149041086	5.57056656587209	5.63355701656978	5.68795872456444	5.56110612211371	5.58519361796888	5.52591908064753	5.54986062224484	-0.221404716061113	0.395735157858691	0.694735054907481
Merged-chr6-143167873-3	chr6	143167765	143167965	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029250, intron 1 of 7)	CpG	635.0	NM_029250	75320.0	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	4.43320782988369	4.40379299604429	4.88155135317196	4.56228837752299	4.65286741752459	4.60873108212452	4.41421656557792	4.59835190300215	-0.0122272748745181	0.973433109580655	0.990485651958264
Merged-chr2-172398184-4	chr2	172398080	172398280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	4386.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	6.26070604271141	6.1732975955029	6.10498338465299	6.1256005345915	5.83645248477959	6.49031823303702	6.28352765698457	6.03643764496138	0.0119753059436577	0.962188333936204	0.986416651799321
Merged-chr3-95521399-4	chr3	95521284	95521484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5402.0	NM_021281	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	6.05270485614295	5.95632991123022	5.94100718594537	6.29836727925642	6.18744246634721	6.44553443822576	6.08563618866545	6.15289928277902	0.205187018145964	0.402858778841258	0.700336798242441
Merged-chr5-92485067-4	chr5	92484970	92485170	+	902.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 2 of 11)	intron (NM_007644, intron 2 of 11)	20587.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	4.78542367598709	4.85665410331747	4.36652848294894	4.40776234941283	4.55695668931433	4.40191818710183	4.39097793169485	3.87979372786017	-0.638127241225382	0.136649258862106	0.411151361943764
Merged-chr11-90492778-4	chr11	90492664	90492864	+	930.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011505, intron 17 of 17)	intron (NM_011505, intron 17 of 17)	-101847.0	NM_172563	217082.0	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	4.43700452753503	3.78539273896809	4.31697316525354	4.39496504285586	4.20415653858489	3.92860855137254	4.33837150908333	4.4347951675297	-0.0511808690897803	0.908116501850018	0.965960244231753
Merged-chr5-129925053-4	chr5	129924980	129925180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16540.0	NM_026916	69034.0	Mm.211372	NM_026916	ENSMUSG00000095789	Nupr1l	1810010E01Rik|4930579G22Rik|Nupr2	nuclear protein transcriptional regulator 1 like	protein-coding	6.49968432072693	6.73132928560273	6.59263606100363	7.34714924164108	5.55341410869277	5.74552073685488	5.5306148405454	6.0205848110238	-1.71852330506079	3.09561397031373e-09	1.81651036103018e-07
Merged-chr18-60729312-4	chr18	60729206	60729406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	-1740.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	7.32005756213275	7.5319499979868	7.54216355586911	7.43245153465358	7.18429709883516	7.34253075321937	7.37568255196756	7.58020151865746	-0.115697235961757	0.531842594982643	0.787698954790353
Merged-chr10-42862460-4	chr10	42862348	42862548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359265, intron 1 of 6)	intron (NM_001359265, intron 1 of 6)	1936.0	NM_001359264	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	6.49718635150525	6.33268542775709	6.02350989877585	6.37434138366624	6.50699869471037	6.39181584633456	6.01554981231792	6.26926062803676	-0.00958765108387817	0.968509819809354	0.988694268692349
Merged-chr2-117404722-4	chr2	117404631	117404831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61854.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	5.5069697371177	5.76142179014014	5.96990987140516	5.80722286392714	5.83731555571082	5.76892218235853	5.76605686964916	5.2807340764511	-0.142541433820741	0.612185003748118	0.832680684364583
Merged-chr10-10555033-2	chr10	10554933	10555133	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	3174.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	3.74819645014005	3.4182826544049	3.55073460221103	3.31097820818682	3.3886977871007	3.61259113872825	3.6378980415487	3.43712378403166	0.0461264610896614	0.928067174902724	0.973851277831645
Merged-chr7-127376096-4	chr7	127376002	127376202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175560)	promoter-TSS (NM_175560)	-52.0	NM_175560	269997.0	Mm.221270	NM_175560	ENSMUSG00000054381	Zfp747	6430604K15Rik	zinc finger protein 747	protein-coding	6.14522219845101	6.41408638721011	5.79978612887586	5.99156792564165	6.2642379314629	6.45513445369407	6.30128292613868	5.94562752317873	0.225381385663037	0.383838861485912	0.685555904565125
Merged-chr8-64946626-4	chr8	64946513	64946713	+	957.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028427)	promoter-TSS (NM_028427)	-572.0	NM_001163747	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	4.4262710242557	4.46640106205576	4.63284844786378	4.68332851906025	4.33261380426696	4.6014438826769	4.68421680452345	4.62980615954525	-0.0129992445321585	0.971608784562259	0.989698355367312
Merged-chr4-32274967-4	chr4	32274864	32275064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-142471.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	6.82296274478194	6.73813514028858	7.06850246891407	7.23286763022514	6.87479514004773	6.85120116996347	6.85829218007546	7.08666317948384	-0.101640259151325	0.634940501611335	0.845499285207272
Merged-chr10-59736210-4	chr10	59736121	59736321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359267, intron 3 of 11)	intron (NM_001359267, intron 3 of 11)	33658.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	6.77791245843476	6.95542682849751	6.8054350038698	6.50264585070008	6.39652650497365	6.17232203070942	6.4798523436998	5.80144783074477	-0.759164834194775	0.002711960565749	0.0295160001696404
Merged-chr19-41911799-4	chr19	41911701	41911901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023418)	promoter-TSS (NM_023418)	-70.0	NM_023418	18648.0	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	8.13371287695267	8.42052562071021	7.98899716140686	7.99421667935925	8.27571515713472	8.39751754497068	8.06482126142001	8.23183021021673	0.131298637732122	0.462084702103482	0.743612557053282
Merged-chr17-86151100-4	chr17	86151001	86151201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5926.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	7.32871067403474	7.33686156871195	7.13921227274789	7.50827452945817	6.82240336752355	7.05006148946103	7.02079125826066	6.65197691324587	-0.620053909902857	0.00215878052942219	0.0248118584375492
Merged-chr8-3649022-4	chr8	3648928	3649128	+	986.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6742.0	NM_001204959	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	4.9877066456588	4.82308926140286	5.20021935222466	5.01147316622983	4.78733806175697	4.49676488957444	4.96421121807806	4.77045980181893	-0.487197178491164	0.150137921613803	0.432676105208667
Merged-chr6-97445309-4	chr6	97445166	97445366	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	14020.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.4525198223237	4.48088808966889	4.76038323001794	5.1066507111122	5.01233800969201	5.04549808478489	4.95153763305842	5.03674891651785	0.51167789698737	0.165000164382388	0.455391496726406
Merged-chr15-94591541-4	chr15	94591455	94591655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1731.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	6.18899541248247	6.6952283913953	6.66194462264287	6.3728402461129	6.28676192572461	6.28315823485532	6.17859977246679	6.07915370379575	-0.419249253211638	0.0777529632002562	0.301551690057813
Merged-chr11-116087045-4	chr11	116086950	116087150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347642)	promoter-TSS (NM_001347642)	-55.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	8.03267014832227	8.02677984145578	7.43090137735579	7.33564740686665	8.05719766317918	8.12570023365463	7.71084412844088	7.70257989101335	0.224674981424725	0.331221033085367	0.642422181260145
Merged-chr7-99530073-4	chr7	99529971	99530171	+	802.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-5415.0	NM_178220	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	4.0882353459647	4.25909729107345	3.89933334101509	3.59363865797411	4.2056482096527	3.96912427333752	3.72229267763681	3.79094801409446	-0.089338021214646	0.854801439691433	0.945298752280211
Merged-chr11-77462527-4	chr11	77462410	77462610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1403.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	5.96939975041612	6.46303172989411	5.85501622730732	5.93448911479973	5.95252112520571	5.98261913901699	6.02474718950743	5.64139960832472	-0.265124024882563	0.328908221319443	0.640144325858488
Merged-chr17-35200630-4	chr17	35200521	35200721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001278601, intron 2 of 2)	intron (NM_001278601, intron 2 of 2)	1386.0	NM_013693	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	6.92958484897923	7.16454775326361	6.57498564319312	6.75822778597882	7.1422812823511	7.16994036056555	6.67091099172134	6.71564585639667	0.105031309642438	0.656581159495576	0.856717390180484
Merged-chr4-19604692-4	chr4	19604584	19604784	+	972.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025476, intron 8 of 9)	intron (NM_025476, intron 8 of 9)	29618.0	NM_025476	66302.0	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	4.93748036855243	4.61254986274283	5.17868307940547	5.26502109888098	5.19591662274253	4.95812777674866	5.43036486682521	5.42900220498846	0.432560674956566	0.207020873758863	0.511049184276
Merged-chr3-9573804-4	chr3	9573718	9573918	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 1 of 8)	intron (NM_133218, intron 1 of 8)	36267.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	4.94235235771659	4.87272549522192	5.19449603574579	5.36443226082882	4.86197314219136	4.46557260323856	4.77343041475233	4.90463029255215	-0.704522922888895	0.0443358396838265	0.214735383811362
Merged-chr9-57589496-4	chr9	57589395	57589595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027895)	promoter-TSS (NM_027895)	43.0	NM_027895	71742.0	Mm.155877	NM_027895	ENSMUSG00000032308	Ulk3	1200015E14Rik	unc-51-like kinase 3	protein-coding	5.41523014801833	5.44016937925143	5.20688923376383	5.45209428614736	5.31961708395792	5.21043486195184	5.18160488238257	5.29717177089978	-0.239517523707646	0.400260673037324	0.698147846003575
Merged-chr7-127185773-2	chr7	127185673	127185873	+	935.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10304.0	NM_001285907	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	3.31096833251388	3.41441223507441	2.93040787078859	2.97890542303376	3.25081487068129	3.30659122629447	3.18351321706764	3.72133287189572	0.79557622658978	0.182236168984429	0.47878218634963
Merged-chr16-91852964-4	chr16	91852866	91853066	+	957.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 21 of 28)	L2b|LINE|L2	78664.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	4.75588596684332	4.807186138408	4.97220530544447	5.36291866531263	4.44801196037861	4.81088708470212	4.88064612082753	4.75353945923072	-0.596267675658533	0.105163452290954	0.356737805395693
Merged-chr17-50975137-1	chr17	50975037	50975237	+	583.0	f0_balb.idr	intron (NM_028162, intron 4 of 21)	L1_Mus4|LINE|L1	184241.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	3.22336014954021	2.95414134418641	3.27405124547207	3.07503749131161	2.97450066050206	2.90930445455358	2.79501740897229	2.87059463874485	-1.04013922377153	0.0903703322918076	0.32831427455258
Merged-chr17-47523571-4	chr17	47523461	47523661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	18510.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	5.38143326593098	5.3548749381272	5.492800179189	5.64717037394764	5.23640494161908	5.30459633418514	5.29696177447702	5.19266920431373	-0.413603853694654	0.146561992113081	0.426967777286073
Merged-chr2-145744702-3	chr2	145744593	145744793	+	593.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	-41423.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	3.40449770575568	3.44047090194566	3.29915719372616	3.39308357627296	3.32699925096976	3.02433671787789	3.17258265050668	2.91622346394744	-0.976973496619532	0.0944425559810992	0.336204156539845
Merged-chr5-105393573-4	chr5	105393467	105393667	+	897.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-22208.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	4.64494062133357	4.33676327867425	4.18259720421154	3.97485521482378	4.81883305114343	4.45585116381459	4.5136163504044	4.18012255373355	0.52305756914726	0.21776699777877	0.524691528498242
Merged-chr11-52099390-4	chr11	52099274	52099474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019411, intron 1 of 6)	CpG	550.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	5.9253091974496	5.95519156553888	6.07976130705579	5.44941305176429	6.15479005534832	6.25506922707396	6.22081820048871	6.28389348961797	0.590165175016781	0.0240130884411723	0.144555786718048
Merged-chr9-111118354-8	chr9	111118278	111118478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164838, exon 1 of 15)	5' UTR (NM_001164838, exon 1 of 15)	267.0	NM_001164838	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	5.41242326513034	5.65529336212056	5.85298073013142	5.35138748067784	5.7547040281682	5.88851975347643	5.32367459008955	5.8267891788727	0.242972811898315	0.406518109001468	0.702984681631047
Merged-chr3-133545187-4	chr3	133545087	133545287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346736)	promoter-TSS (NM_001346736)	-797.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	6.84497658048577	6.94060994221815	7.28815268933836	7.14415782768596	6.87613164958685	7.07940428570347	7.04496372246142	7.30302530258628	0.0139389270562783	0.946791654731072	0.980956087221295
Merged-chr19-41071750-4	chr19	41071645	41071845	+	756.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153520, intron 2 of 5)	intron (NM_153520, intron 2 of 5)	5368.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	4.12305755150602	4.11591152950139	4.07627964288854	4.16275556969871	4.48076408742844	3.98841031023705	4.05908003281032	4.07387476371331	0.150059993882293	0.721220086516322	0.888699464003208
Merged-chr7-123242483-4	chr7	123242392	123242592	+	824.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146198, intron 6 of 16)	intron (NM_146198, intron 6 of 16)	27626.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	3.90397848305658	4.15238893577804	3.85496426105233	3.77788409435048	3.92397842324863	3.69109658827651	3.78815420358865	3.90224168808952	-0.255877295052661	0.57174258163969	0.810791045904066
Merged-chr7-43672468-3	chr7	43672389	43672589	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145582, intron 1 of 2)	intron (NM_145582, intron 1 of 2)	458.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	3.59977859527989	3.74855535550721	3.76394346229277	3.36894143222238	4.13748205820588	3.71861581286244	3.93615629268622	3.65510753363303	0.793673615000094	0.102528846344739	0.351723010938945
Merged-chr4-41738503-4	chr4	41738401	41738601	+	759.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001286551)	TTS (NM_001286551)	2858.0	NM_001286540	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	3.89793304100314	4.14813830669267	3.53845135035874	4.18168351828424	4.08114197066446	4.26280916611855	3.98271275074407	4.04498672511072	0.304022464719873	0.51504951089919	0.777349780527563
Merged-chr2-119189501-4	chr2	119189382	119189582	+	673.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139139, intron 1 of 10)	intron (NM_139139, intron 1 of 10)	14973.0	NM_001039223	623781.0	Mm.389344	NM_001039223	ENSMUSG00000055926	Gm14137	-	predicted gene 14137	protein-coding	3.45104054082475	3.54868436527926	3.33672880153984	3.40528887420767	3.49606935633663	3.44902825138685	3.5909601207338	3.33510266519523	0.121375882645214	0.808327284246502	0.92602729294698
Merged-chr8-75093615-4	chr8	75093514	75093714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010442)	promoter-TSS (NM_010442)	-4.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	8.0518910043888	8.29990954014018	8.02637637255221	7.86193922202045	8.25344640385333	8.25063129377531	8.40412215347154	7.97263530272924	0.210853724544173	0.244977859574455	0.556124352309046
Merged-chr1-191115810-6	chr1	191115681	191115881	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	17367.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	5.72929277118769	5.51452247844188	5.05572266254684	5.34346291573133	5.04367747618365	5.1971349970866	4.75706397239822	5.08742562131731	-0.741182655541922	0.0232192576078279	0.141206457370122
Merged-chr17-50361921-4	chr17	50361814	50362014	+	972.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68294.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	4.8303938778332	4.47729763637661	4.90264333700871	4.90924548715064	5.08056298088416	4.72281197446549	4.87904155257374	4.96688920747264	0.262095596836612	0.443108678246966	0.729779110682633
Merged-chr16-57549820-4	chr16	57549720	57549920	+	978.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	578.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	4.28909390885265	5.02444681936556	4.62872670663887	4.40111143716836	4.67994315597484	4.26351126655398	4.449889642275	4.13357180826413	-0.464958570984927	0.275505111809686	0.58732451865889
Merged-chr12-3799756-4	chr12	3799641	3799841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7239.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	6.76023956154411	6.94122514199552	6.77590070810634	6.97021034025211	6.6750403606861	6.69948146957234	6.92751636685109	6.88116645115941	-0.109665753628892	0.585932595337414	0.818478990587386
Merged-chr14-103907983-2	chr14	103907883	103908083	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63507.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	3.15365852577341	3.03983774646422	3.31142244922738	2.9780922589092	3.2193089083113	3.08351280131337	2.83182446270165	2.83856833565346	-0.449273681650953	0.465818629762252	0.746230290057781
Merged-chr3-20028816-4	chr3	20028743	20028943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 4 of 16)	intron (NM_080634, intron 4 of 16)	6467.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	6.08936629843676	6.36607229282966	6.68355919766433	6.9352857937084	6.11817963127823	5.77884203506255	5.97007097300319	5.99650404911363	-0.899706460376063	0.00107009554451554	0.0142052090195956
Merged-chr6-82714418-4	chr6	82714313	82714513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60041.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	5.43772036376814	5.93832618986302	5.37543189050669	5.43340859191835	5.77705687688432	6.11464170297317	5.80382608713347	5.66043261029531	0.463187398920857	0.106685135939143	0.360148982262853
Merged-chr15-99469248-4	chr15	99469150	99469350	+	859.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029236)	TTS (NM_029236)	5480.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	4.33100681273545	4.57696558900402	4.24149002285478	4.02748744260472	4.34468830187917	4.21892929996316	4.43524751274487	4.41308241612144	0.140213248311632	0.727312771297736	0.891423086495076
Merged-chr10-95940643-4	chr10	95940518	95940718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001932)	promoter-TSS (NM_001001932)	-45.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	8.20730355044931	8.56748811565382	8.40400167364991	8.5986479301668	8.51118842263049	8.6029122409446	8.88629190397733	8.39854428490094	0.192427403181967	0.284486406188426	0.596324963525583
Merged-chr13-20180745-7	chr13	20180506	20180706	+	975.035706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	ORR1F|LTR|ERVL-MaLR	90099.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	4.53450410102298	3.82450293274194	4.41421173830811	4.35204734787422	4.31364421270519	4.62759669994612	4.47506944371439	4.57009318018101	0.441994379571888	0.284500804960958	0.596324963525583
Merged-chr2-165907296-3	chr2	165907220	165907420	+	661.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-22482.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	2.86088242491548	2.84680172532729	2.99843388066322	2.83221723387615	3.42511828877703	3.10965918410142	3.46632981873162	3.1793408660066	1.71325289943272	0.00278048963115618	0.0301053348731466
Merged-chr14-57856239-3	chr14	57856107	57856307	+	641.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360097, intron 7 of 13)	B2_Mm2|SINE|B2	29968.0	NM_026401	67840.0	Mm.319530	NM_026401	ENSMUSG00000021967	Mrpl57	2610025P17Rik|AV005697|Mrp63	mitochondrial ribosomal protein L57	protein-coding	3.13328280799676	3.15744449529978	3.13370780442739	3.00695183312175	3.08552798578237	2.77811243631636	3.00731114104175	2.95452398402136	-0.576450006242925	0.33456778572224	0.645071328704234
Merged-chr15-78405864-3	chr15	78405736	78405936	+	821.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162493)	promoter-TSS (NM_001162493)	23.0	NM_009437	22117.0	Mm.15312	NM_009437	ENSMUSG00000044986	Tst	Rhodanese	thiosulfate sulfurtransferase, mitochondrial	protein-coding	2.79851442711115	2.65186469512237	2.52692138155426	2.62169218020369	2.96681390838389	2.84228364778826	2.78876216483014	2.8573284865876	1.02642352133485	0.102544018349272	0.351758105160619
Merged-chr3-106547784-4	chr3	106547692	106547892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133869)	promoter-TSS (NM_133869)	-6.0	NM_001286986	67171.0	Mm.290488	NM_026013	ENSMUSG00000027900	Dram2	2010305N14Rik|2610318G18Rik|AI647667|Tmem77	DNA-damage regulated autophagy modulator 2	protein-coding	7.50862493972352	7.70538068340617	7.75159129536299	7.5375491180752	7.62716156847617	7.9516402544615	7.69809510677669	7.95519790635677	0.242488426696372	0.177794745986875	0.473447520561159
Merged-chr3-96577468-4	chr3	96577368	96577568	+	924.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001293701)	TTS (NM_001293701)	-10667.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	4.45702059575964	4.19281675069381	4.3711148269238	4.5219130854281	4.44050107156006	4.5878209435423	4.47822159902411	4.6483649168022	0.309376889006993	0.403618081238371	0.700922982752502
Merged-chr9-7868992-4	chr9	7868872	7869072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	4198.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	5.68452170673942	6.09316665749216	5.62966736626754	5.69044857204242	6.12888683325313	6.29476209317521	5.85731346697172	6.1357506668421	0.514699085414022	0.048205003183078	0.226565610297702
Merged-chr4-129024963-4	chr4	129024875	129025075	+	873.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31751.0	NM_001033966	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	4.29937664744135	3.96441559135883	4.131664189792	4.28960098839675	4.30353211476793	3.82895511596714	3.75649165856122	4.03583728914165	-0.439659241145315	0.331456208440134	0.642595786244724
Merged-chr5-72559774-4	chr5	72559680	72559880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133921)	promoter-TSS (NM_133921)	-135.0	NM_133921	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	8.67022737466594	8.65419791865925	8.63600008151702	8.54014791420339	8.68968438040212	8.90957118785152	8.52230178014396	8.74671618512148	0.124631019276559	0.419970728050237	0.713013630337217
Merged-chr2-58759799-2	chr2	58759699	58759899	+	751.916687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289660, intron 2 of 7)	MER5A1|DNA|hAT-Charlie	4615.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	3.25248484726845	3.30833924808537	3.18801149152505	3.6288464644253	3.39117176219088	3.36477382574795	3.66373089016408	3.58400498315207	0.444020754080354	0.41792490012991	0.711559978623806
Merged-chr5-65860836-4	chr5	65860722	65860922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2747.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	6.32040553389168	5.7396535538123	6.08964847141423	6.27004612742263	6.11791614505795	6.17877627948406	6.43782014108375	6.28122981289063	0.192309025917544	0.445733124072138	0.731683604435051
Merged-chr8-84871526-4	chr8	84871403	84871603	+	726.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027954)	promoter-TSS (NM_027954)	-608.0	NR_031759	71846.0	Mm.229128	NM_027954	ENSMUSG00000003824	Syce2	1700013H19Rik|AA407907|Cesc1	synaptonemal complex central element protein 2	protein-coding	3.95364069410641	3.74021845511258	3.37005917908367	3.20953134515557	3.47300228789764	3.42219788438098	3.41724306938022	3.42841360873715	-0.521972662693598	0.346694056912625	0.654902857707284
Merged-chr18-82825706-4	chr18	82825607	82825807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30190.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	6.99014689356077	6.63789640726061	7.49752847783597	7.05156063095465	7.21340067459697	6.91160257207199	7.68147049580558	7.1787033697662	0.27247767112544	0.286377070226877	0.598054698348964
Merged-chr7-97361694-4	chr7	97361654	97361854	+	979.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-9863.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	4.05767878980012	3.87849349774205	3.62955526194324	3.12764480770496	3.74264648018098	3.69143250334589	3.86765070856762	3.62753740967722	0.0572784040642973	0.916914523514008	0.969316642693612
Merged-chr17-57096281-4	chr17	57096170	57096370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033508, intron 3 of 3)	intron (NR_033508, intron 3 of 3)	-8488.0	NM_009451	22153.0	Mm.7420	NM_009451	ENSMUSG00000062591	Tubb4a	AI325297|M(beta)4|Tubb|Tubb4	tubulin, beta 4A class IVA	protein-coding	7.10375244440219	7.30774054008476	6.6090671255306	6.65903607161487	7.19081541987849	7.13706462997068	6.88639048614892	6.68599243992054	0.0626426019708234	0.80030597770503	0.923040237917604
Merged-chr10-59692666-4	chr10	59692556	59692756	+	892.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9907.0	NM_001359267	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	4.6366839795262	4.36398812333253	4.52067403693267	4.11595398597657	4.5009782378704	4.56723818965188	4.65162286813175	4.63435665046397	0.418751844525981	0.268637392385299	0.580260491970544
Merged-chr6-56704706-4	chr6	56704585	56704785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025520)	promoter-TSS (NM_025520)	14.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	6.90464067948532	6.841483232185	6.84141882720204	6.91888511394091	6.6064221940214	6.50378761441901	6.31263408655664	6.5396189152709	-0.542613379980013	0.00771414191243298	0.0654451617622249
Merged-chr19-42148469-3	chr19	42148372	42148572	+	847.822205	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_183195, exon 1 of 2)	3' UTR (NM_183195, exon 1 of 2)	1083.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	3.83602534554072	3.81045696509472	4.01771638617848	4.05838508083388	3.62038420293387	3.62121609123658	3.55395691957003	3.67944797068616	-0.978534561139258	0.0359755592696366	0.188408538512677
Merged-chr19-55235613-3	chr19	55235580	55235780	+	680.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 2 of 20)	intron (NM_001081076, intron 2 of 20)	5556.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	3.33635474062058	3.11189237530354	3.48284218952721	3.11255752982381	3.07755920682333	3.22303654851427	2.97319953390754	2.91178517641374	-0.841925141164932	0.155364738901071	0.440979076070846
Merged-chr1-152521027-4	chr1	152520903	152521103	+	831.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 17 of 17)	intron (NM_016846, intron 17 of 17)	104214.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	3.90817672280647	3.99217126824021	3.75259213692059	3.61459214281098	3.87824747650971	3.69368047428048	4.11366600679566	4.0885517376734	0.391615770033457	0.391864786797492	0.691573531177693
Merged-chr7-132339593-4	chr7	132339499	132339699	+	988.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22371.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	5.51015948398031	6.17513153076229	6.0183355369903	5.51034292067364	5.48202989506148	5.74254891187031	5.26926331019325	4.99267691676058	-0.731666394502376	0.0281039489666719	0.160469761325991
Merged-chr3-95283461-3	chr3	95283362	95283562	+	899.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_199475, exon 1 of 10)	5' UTR (NM_199475, exon 1 of 10)	527.0	NM_199475	75007.0	Mm.279287	NM_133858	ENSMUSG00000038712	Mindy1	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|Fam63a|cI-40|mKIAA1390|ni	MINDY lysine 48 deubiquitinase 1	protein-coding	4.55172182962544	4.52986801188209	4.37927992852607	4.46188451946977	4.569226638015	4.68414614917116	4.44866824947418	4.80493114389171	0.330382614844446	0.3527952032003	0.659735532175456
Merged-chr4-102624323-4	chr4	102624251	102624451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34508.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	7.8096793765429	8.41594399205725	7.74661035504553	7.34244354945926	8.18196546170788	8.44941174844291	7.98154678506653	7.79782942371063	0.308227925561638	0.223494825645733	0.531600273839185
Merged-chr19-4169542-4	chr19	4169443	4169643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134148, exon 9 of 10)	exon (NM_134148, exon 9 of 10)	5936.0	NM_134148	107239.0	Mm.482310	NM_134148	ENSMUSG00000075289	Carns1	AI790298|Atpgd1|mKIAA1394	carnosine synthase 1	protein-coding	8.2487032122528	8.40186988976782	7.92548138151932	7.91716080796949	8.0753787397983	8.16685683689649	7.95097432351425	7.85301324154747	-0.153359705723478	0.415708358954834	0.709886482687489
Merged-chr7-83600074-4	chr7	83599921	83600121	+	842.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177695, exon 8 of 23)	exon (NM_177695, exon 8 of 23)	15090.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	3.62732228481146	3.49403772122729	3.57374572692288	3.56874872259232	3.58085822445281	3.69035066578656	3.61327360776405	3.82147526339082	0.346831414683609	0.459937227477892	0.742271214480192
Merged-chr9-75432934-4	chr9	75432842	75433042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8582.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	5.11752114533737	5.33704206294049	5.18985803150552	4.67326146049981	6.0659214905432	5.6733565311942	5.62338674700575	5.76399160906448	1.2606281836946	5.08393810917532e-05	0.00114806354908944
Merged-chr18-53262031-2	chr18	53261931	53262131	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	C-rich|Low_complexity|Low_complexity	16369.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	3.16139010427833	2.94385646112793	3.10427066952996	2.85280783555998	3.01500161885619	3.09079887769977	3.09251628778876	3.26772913589671	0.435901426542236	0.448863195864222	0.734080132546508
Merged-chr13-92741031-3	chr13	92740931	92741131	+	565.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	53787.0	NM_011582	21828.0	Mm.20865	NM_011582	ENSMUSG00000021702	Thbs4	TSP4	thrombospondin 4	protein-coding	3.4649533279694	3.75646368419437	3.58242991437464	3.24722514395526	3.67207990783321	3.75634832590999	3.67443458070069	3.92216059100059	0.760728916275562	0.12501878439476	0.392463264286612
Merged-chr1-43521210-4	chr1	43521120	43521320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 2 of 4)	intron (NM_010879, intron 2 of 4)	75469.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	6.75088179674613	6.71353140307641	6.87942715060315	7.25606721748237	6.93906907088839	6.75467688972585	7.15183663868645	6.71714479229785	-0.0421217143679463	0.855338042327524	0.945609258741781
Merged-chr12-8499442-4	chr12	8499321	8499521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007483, exon 1 of 1)	exon (NM_007483, exon 1 of 1)	588.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	7.68193735019143	7.95162857702038	7.09198707347539	6.95074468302114	8.27788238824072	8.31074369980217	8.45913651737844	8.3003109317101	1.10821069826295	4.84849087499996e-06	0.000144036198660944
Merged-chr11-98810079-1	chr11	98809979	98810179	+	1000.0	f0_c57.idr	promoter-TSS (NR_033551)	promoter-TSS (NR_033551)	10.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	5.14877309973481	5.41911213699099	5.11556572765778	5.02694447525893	5.09939905625961	5.53831500490805	5.42050568996393	5.36190061581392	0.320722889039193	0.293534944149478	0.606013394135677
Merged-chr2-148851400-4	chr2	148851305	148851505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029960)	promoter-TSS (NM_029960)	-471.0	NM_029960	77705.0	Mm.159975	NM_029960	ENSMUSG00000027446	9230104L09Rik	mCST E2	RIKEN cDNA 9230104L09 gene	protein-coding	5.89348295196188	5.72066941709144	6.14149815121102	6.1075121250103	5.68845927525805	5.82008887240294	5.81836914482607	5.99948855297592	-0.246731107136579	0.338789108853567	0.648145150521291
Merged-chr4-59436141-4	chr4	59436051	59436251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 1 of 16)	MTD|LTR|ERVL-MaLR	2482.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	5.56451004446253	5.63537402985164	5.66894061521053	5.93463254330648	5.19136669010001	5.40755184052834	5.71207566033865	5.56156277935969	-0.426346371263005	0.139845444655211	0.415844044997837
Merged-chr5-136583857-4	chr5	136583751	136583951	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16361.0	NM_001291238	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	4.15171304882961	4.64489552059113	3.66837731486521	4.15709491818326	4.82432291226202	4.67849706235601	4.13464339220321	4.46515788127021	0.808085069562727	0.0925673899662293	0.332787224122745
Merged-chr2-91237100-4	chr2	91237001	91237201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015464)	promoter-TSS (NR_015464)	-35.0	NM_028119	107986.0	Mm.389334	NM_028119	ENSMUSG00000002109	Ddb2	2610043A19Rik	damage specific DNA binding protein 2	protein-coding	8.08064718310132	8.03656827432515	7.98241211649427	7.70220944343828	8.10505727498212	8.18732301536274	8.23755486710832	7.97014107187018	0.230165030940135	0.185812124817274	0.483721791835591
Merged-chr3-58416039-3	chr3	58415920	58416120	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081229, exon 1 of 4)	exon (NM_001081229, exon 1 of 4)	1300.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	4.74064714898471	4.38544510487487	4.77913055249408	4.5857171600732	4.70581807198517	5.24461716607385	4.64078457048947	4.91629863933001	0.551559695691737	0.127644783268262	0.397533495001164
Merged-chr13-63566368-4	chr13	63566295	63566495	+	980.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008957)	promoter-TSS (NM_008957)	-660.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	4.84421291247505	4.898260979288	4.71901630444404	5.26385552129618	5.25250303692783	5.453271384269	5.07385236777005	5.24976560277711	0.540708581561056	0.106564099829326	0.359920177959867
Merged-chr15-36791827-4	chr15	36791718	36791918	+	958.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253807)	promoter-TSS (NM_001253807)	-886.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	5.65637684511867	5.39092772168644	5.33072348481668	5.41994668555993	5.75532135494411	4.84577702784371	5.67527757276543	5.50070625933146	0.0839986485457765	0.796000145657358	0.921021739807616
Merged-chr13-5873971-4	chr13	5873851	5874051	+	815.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12462.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	4.06619442262759	4.32901507320003	4.1137481350163	3.55954162851811	4.16748131539308	4.49408425208926	3.89880155922193	3.74162259278664	0.165026725249962	0.740884457786528	0.89809586945461
Merged-chr17-62627721-4	chr17	62627604	62627804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010109, intron 2 of 3)	intron (NM_010109, intron 2 of 3)	253613.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	7.28653159047732	6.72704445690566	6.73076431619725	7.12424639875121	6.67383176498195	6.84683902188416	6.68151840441006	6.53286447322864	-0.434123841429043	0.0552347348493122	0.24572207448995
Merged-chr11-61855053-4	chr11	61854968	61855168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013881)	promoter-TSS (NM_013881)	24.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	5.70570539162707	5.93859318291105	5.70670397788864	5.46100167846393	6.11800027396838	6.18327327781094	5.65142750092468	6.10434248490443	0.53136562466321	0.0506621832156537	0.23339651366127
Merged-chr14-21068827-3	chr14	21068714	21068914	+	836.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 1 of 10)	intron (NM_134079, intron 1 of 10)	-7338.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	3.86944682036395	3.62741479240077	3.91647792727742	3.61611526365115	3.57409944910196	3.89187054685403	3.70456243271642	3.81953770839938	-0.0218937111857812	0.962786137022582	0.986713566358706
Merged-chr15-82147774-4	chr15	82147659	82147859	+	919.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033218, intron 1 of 18)	CpG	490.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	4.29992289794359	4.50132993834458	4.52262740109807	4.08363941053138	4.81960591337968	4.69521540016343	4.61736989377684	4.47828704575489	0.716306248008046	0.0576505475314296	0.252042769039962
Merged-chr9-45278280-3	chr9	45278246	45278446	+	905.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9197.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	3.28390124712894	2.89918234156148	3.11246694072941	3.24104952292188	2.93534379062348	3.15995875797768	3.32270595101425	3.28248298855321	0.130518488824127	0.823417991758959	0.932313798231142
Merged-chr1-106162762-4	chr1	106162637	106162837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040630, intron 2 of 2)	B3A|SINE|B2	8787.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	5.74839024552028	5.45636723418464	5.9331021114012	5.76379120958035	5.83931470453888	5.9484604003107	5.67016457157153	5.84044496699346	0.151920487564496	0.560799424359629	0.804731028246143
Merged-chr5-145191580-4	chr5	145191481	145191681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020582)	promoter-TSS (NM_020582)	11.0	NM_020582	57423.0	Mm.133551	NM_020582	ENSMUSG00000038690	Atp5j2	1110019H14Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2	protein-coding	6.68420354048797	6.19155849798626	6.02075829085254	6.47991202463378	6.57396259190974	6.90273457880053	6.57769061825147	6.54441869258366	0.408059474225648	0.0946736020426222	0.33668610141353
Merged-chr7-28170522-2	chr7	28170422	28170622	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007991, intron 1 of 8)	intron (NM_007991, intron 1 of 8)	774.0	NM_007991	14113.0	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	3.36914208725198	3.19013738519458	2.94158930198462	2.82826006886824	3.23379458349508	3.37544326171306	3.30266282633594	3.31448053516941	0.824888411777712	0.153878270252096	0.438835746555308
Merged-chr2-24359511-3	chr2	24359405	24359605	+	909.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_LTR|LTR|ERV1	-8170.0	NM_001355231	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	3.32171340124924	4.13395238826278	3.39046154037301	2.98715401448052	3.85236548319972	4.34296223247018	3.56292517329775	3.45384584998504	0.876929180323712	0.167337988914836	0.458940920611074
Merged-chr12-85533227-4	chr12	85533116	85533316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59326.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	7.80178512070663	7.91046635507901	7.70273165179512	7.3839243335737	7.5730184410899	7.64181029328382	7.64897492724444	7.25928149221615	-0.218155892589416	0.278434645194908	0.590625310604573
Merged-chr9-21426246-4	chr9	21426152	21426352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 1 of 19)	intron (NM_001357721, intron 1 of 19)	1344.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	5.56294632313171	5.37520407474313	5.30723296511502	5.40168770488652	5.43432054462995	5.41870499648961	5.58609809413193	5.61042895514316	0.174006710693824	0.523232863667104	0.782449675195448
Merged-chr4-138068820-4	chr4	138068750	138068950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256195, intron 4 of 34)	intron (NM_001256195, intron 4 of 34)	69668.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	6.49707536353969	6.8553503897583	6.19582392860178	6.57159603218842	6.66192232116481	6.35292128931381	6.62200729943308	6.57487818409821	0.00866978991405734	0.970534412687625	0.989436241028349
Merged-chr4-56802972-1	chr4	56802872	56803072	+	579.0	f0_balb.idr	promoter-TSS (NM_026079)	promoter-TSS (NM_026079)	-641.0	NM_026079	230233.0	Mm.282743	NM_026079	ENSMUSG00000028431	Ikbkap	3110040G09Rik|6030413P05|C78473|Elp1|IKAP	inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated protein	protein-coding	3.72581172278352	3.93694683703844	3.51942978946542	3.29418976275332	3.78646371013866	3.63686619797762	3.26321220065886	3.20334788002287	-0.436440968807321	0.449702142641459	0.734839862538956
Merged-chr15-89211689-3	chr15	89211586	89211786	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027805, exon 1 of 8)	5' UTR (NM_027805, exon 1 of 8)	127.0	NM_027805	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	4.77105974456899	4.73186607915348	4.88347079755644	4.86802460262564	5.10882587832619	4.90720716611929	4.89497176056999	4.84411868514965	0.266874118560685	0.407082249032751	0.703498771581582
Merged-chr10-118866679-4	chr10	118866586	118866786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	2217.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	6.12881525078969	6.54034016733279	6.47754115267634	5.66364034442453	6.10891600160956	6.26518166552137	5.88156604124511	5.45719158838521	-0.42649524112203	0.181043507695966	0.477472149182674
Merged-chr2-69897211-4	chr2	69897113	69897313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303033)	promoter-TSS (NM_001303033)	-33.0	NM_001303033	68795.0	Mm.314576	NM_177783	ENSMUSG00000044308	Ubr3	1110059H15Rik|4833421P10Rik|A130030D10Rik|AA409735|AA414972|AA422631|AI646861|AU016126|Zfp650|Znf650	ubiquitin protein ligase E3 component n-recognin 3	protein-coding	8.04739036575956	8.39283678045018	8.15162606972422	8.05125113712783	8.2615743998082	8.15748559317488	8.4694818293401	7.90160434798954	0.061358111069509	0.742504002662665	0.898494026733066
Merged-chr6-124745637-4	chr6	124745542	124745742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007881, exon 6 of 10)	exon (NM_007881, exon 6 of 10)	-4563.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	8.1802003008818	8.33669736894627	7.88858552388382	8.00854353912671	8.16301373433914	8.1940470198638	7.97835220929923	8.02470909339577	-0.0248658624942498	0.886869111094612	0.957513044740158
Merged-chr15-78927449-3	chr15	78927415	78927615	+	917.3412480000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008495, intron 1 of 3)	intron (NM_008495, intron 1 of 3)	790.0	NM_008495	16852.0	Mm.43831	NM_008495	ENSMUSG00000068220	Lgals1	AA410090|Gal-1|Galbp|L-14.5|L14|Lect14|galectin-1	lectin, galactose binding, soluble 1	protein-coding	2.73798537819975	2.84585316234607	3.11868791052899	2.54569223008306	2.36642579229602	2.56410645953593	2.52638845071856	2.73690968857517	-1.41018023742158	0.0568645303245004	0.249803147810135
Merged-chr6-125661718-1	chr6	125661618	125661818	+	616.0	f0_c57.idr	intron (NM_011708, intron 38 of 51)	intron (NM_011708, intron 38 of 51)	-28701.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	3.25192942661847	3.40316402378585	3.4874284750791	3.14462985078312	3.79155850292027	3.70892849761165	3.30323700045989	3.31345834933867	0.790387228609165	0.142085864501898	0.419457083877923
Merged-chr2-36217737-3	chr2	36217613	36217813	+	828.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12713.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	3.31282980334394	3.2102521245665	3.69726271437737	3.61139322789263	3.5058799275102	3.42706152396833	3.42212614698872	3.87109116442585	0.294973663006482	0.584107532678318	0.817543313050016
Merged-chr12-102382423-4	chr12	102382325	102382525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	57388.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.15614003678171	6.50514780133785	7.65657442864948	7.69788819319637	6.25148270124842	5.82391402106388	6.60962304803834	6.45538904396581	-1.21391019472684	0.0341239969745285	0.182391828538707
Merged-chr2-152766649-4	chr2	152766539	152766739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289739, intron 3 of 4)	intron (NM_001289739, intron 3 of 4)	12466.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	5.96889715987811	5.8431109101495	5.16759631556508	5.25408519191932	5.68026944462286	5.80590674092168	5.70153494399495	5.49044862076961	0.130667633109156	0.680369482350899	0.868866630501366
Merged-chr5-141064997-3	chr5	141064908	141065108	+	723.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-64412.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	2.95879153382475	3.02475167843342	3.02166640412104	2.91030644849525	3.05891224916396	3.06768230813496	3.01095361430486	3.2432839480909	0.503723850518535	0.372737808259423	0.676451504400639
Merged-chr6-112696282-4	chr6	112696171	112696371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167730, intron 1 of 13)	intron (NM_001167730, intron 1 of 13)	399.0	NM_021385	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	5.64029773635635	5.91696554352106	5.50119014136852	5.57190594043087	6.0008781108217	6.03404811546442	5.73919600094674	5.68960285433074	0.352306952240191	0.187166586709161	0.485419219361318
Merged-chr13-59906392-4	chr13	59906293	59906493	+	997.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-83246.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	5.27897008227152	5.58282787299892	5.76770414784377	6.0405370006031	5.71310720923606	5.52701952766895	5.82968698457647	5.87736459215341	0.0419839367000195	0.88780552824496	0.957921291742303
Merged-chr1-163779584-4	chr1	163779490	163779690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010629)	promoter-TSS (NM_010629)	7.0	NM_010629	16579.0	Mm.4651	NM_010629	ENSMUSG00000026585	Kifap3	KAP-3|KAP3|SMAP	kinesin-associated protein 3	protein-coding	9.27469171996877	9.50538232491716	9.41695882135897	9.77355972385724	9.42296693821953	9.55060331344058	9.81576626878318	9.5476372178251	0.0989041837137861	0.56056379463393	0.80456182516632
Merged-chr12-104174950-4	chr12	104174844	104175044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21072.0	NM_008458	16625.0	Mm.422814	NM_008458	ENSMUSG00000066361	Serpina3c	1A1|Kalbp|Klkbp|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3C	protein-coding	7.35673189957378	7.27886446285101	7.42824321615502	7.675590404494	7.59775480075496	7.06704174051963	7.79507747607474	7.59591578662957	0.122971640074458	0.56758306550213	0.808307057069209
Merged-chr2-76675248-4	chr2	76675163	76675363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031256)	promoter-TSS (NM_031256)	-52.0	NM_031256	83435.0	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	7.1184090143964	7.11192578283527	7.11964519408055	7.34964546027738	7.1627868265309	6.920446888195	7.27692907738701	6.89937054700257	-0.148722153593839	0.45566526854221	0.739063419153833
Merged-chr12-103336888-4	chr12	103336813	103337013	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 3 of 9)	intron (NM_023049, intron 3 of 9)	19088.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	4.33920182276255	4.24598028166368	4.73576857083923	4.57823053911047	4.7463758492463	4.21093408309041	4.40959627748097	4.6263855126968	0.0735991299611554	0.852618731556946	0.944594954733765
Merged-chr3-37414649-4	chr3	37414548	37414748	+	886.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153561, intron 2 of 4)	intron (NM_153561, intron 2 of 4)	4948.0	NM_001291044	229228.0	Mm.436967	NM_153561	ENSMUSG00000050174	Nudt6	Asfgf2b	nudix (nucleoside diphosphate linked moiety X)-type motif 6	protein-coding	3.72046502544197	3.72528741594012	3.92369457292717	3.80926552831719	4.09513077023379	3.78284777032692	3.99605532924989	3.60456871796822	0.27354614031159	0.552500712858665	0.799724417703446
Merged-chr8-123065461-4	chr8	123065360	123065560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153176)	promoter-TSS (NM_153176)	-48.0	NM_153176	234847.0	Mm.292075	NM_153176	ENSMUSG00000000738	Spg7	AI452278|AU015315|Cmar|PGN	SPG7, paraplegin matrix AAA peptidase subunit	protein-coding	7.60959700142026	7.3562122760828	6.9959544464132	7.1794947327675	7.31563473268765	7.53303731930072	7.45293508235744	7.36098553986099	0.153835639962085	0.445994651147874	0.731774752267646
Merged-chr17-67450301-4	chr17	67450209	67450409	+	987.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95818.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	5.15060773380798	4.97781212599667	5.01329503678844	5.51485616435559	5.07230946517473	5.07760194073209	5.3890862310277	5.41256479988471	0.0725866949180564	0.825523809744125	0.933108872014231
Merged-chr1-152807801-4	chr1	152807673	152807873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010877, exon 2 of 16)	5' UTR (NM_010877, exon 2 of 16)	7620.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	7.67887324018547	7.61835899251372	7.44968236589954	7.58543430156998	7.46612969841699	7.7561430685077	7.45106471703061	7.45422703446651	-0.0687120885047728	0.698570690788853	0.87844064975986
Merged-chr13-100795715-4	chr13	100795605	100795805	+	840.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-9219.0	NM_172301	268697.0	Mm.260114	NM_172301	ENSMUSG00000041431	Ccnb1	Ccnb1-rs1|Ccnb1-rs13|CycB1|Cycb-4|Cycb-5|Cycb1-rs1	cyclin B1	protein-coding	3.53780108103939	4.09028470580661	3.70716968973755	3.69308803040358	3.92808639529785	3.5271956828009	3.58358904388493	3.80642345983508	-0.131697836082628	0.791688175568538	0.919252187122779
Merged-chr7-67631040-3	chr7	67630942	67631142	+	989.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028143, intron 2 of 9)	intron (NR_028143, intron 2 of 9)	14194.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	3.82583270678683	3.9372308153951	3.92838506363599	3.57167066132547	4.27924301834904	3.77607019345107	4.13328859289955	3.82420247826464	0.603883830809949	0.192417085730714	0.492034363204047
Merged-chr16-3703088-4	chr16	3702984	3703184	+	800.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	15040.0	NM_001161790	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	4.26490528871407	4.12762337034591	4.175172447242	4.05224294663294	4.32674416727178	3.92031275156843	4.32988378541284	4.53594086030455	0.373437922149524	0.362093018729678	0.66735526990214
Merged-chr5-124351335-3	chr5	124351239	124351439	+	876.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013812, intron 1 of 3)	intron (NM_013812, intron 1 of 3)	3289.0	NM_013812	13445.0	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	3.76871058270582	3.61053574820796	3.35654641863142	3.46180381311578	3.30261880326052	3.58855589673015	3.34461163427228	3.4142049718869	-0.481872280831625	0.351939426529436	0.659159468501704
Merged-chr12-111653636-3	chr12	111653541	111653741	+	781.866638	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021516, intron 16 of 16)	intron (NM_021516, intron 16 of 16)	18697.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	3.97428929401564	4.12680560050388	3.63894647587562	3.49308230451114	4.25092421683354	3.94005499901665	4.09659419119219	4.31666645056284	0.91018572391713	0.0519436972626866	0.237264995665839
Merged-chr2-164866954-4	chr2	164866867	164867067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9259.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	8.06500510650379	7.96017485150068	7.72547033175579	7.85481551589365	7.65488933171138	7.69973828966184	7.54120319162569	7.95736715228801	-0.241236630847382	0.182260403583969	0.47878218634963
Merged-chr9-96399623-4	chr9	96399507	96399707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35176.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	7.65618643197171	8.02698224521035	7.81779829116523	7.6210025054958	7.82553901128252	7.89313910475597	7.55045311124255	7.75081463886061	-0.033096415211448	0.85822824395647	0.946569793240634
Merged-chr15-30646835-4	chr15	30646713	30646913	+	865.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008729, exon 7 of 23)	exon (NM_008729, exon 7 of 23)	-392313.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	4.01243058436556	3.94643588067547	4.32429968042879	4.44718852044387	4.20416995448026	4.18626010361928	3.99639920988395	3.79251873475808	-0.389281241759765	0.383993853983023	0.685644380524807
Merged-chr1-167349992-4	chr1	167349910	167350110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019993)	promoter-TSS (NM_019993)	19.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	7.25632967629341	7.38796912073775	7.94641551139342	7.54450290370023	7.00593965237026	7.51017470446271	7.39608147452395	7.2960167513411	-0.335422593452738	0.131590528745529	0.403904809478786
Merged-chr11-98709282-4	chr11	98709179	98709379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361995, intron 19 of 25)	intron (NM_001361995, intron 19 of 25)	7966.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	5.52492546249837	5.68440089879083	6.08547119616971	5.68895174280691	5.61088176566112	5.70331062299125	5.76033134347361	5.98343509900601	0.0163360955720922	0.952453146649748	0.983110341498473
Merged-chr1-191201414-4	chr1	191201316	191201516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18083.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	7.31003271309414	7.60593232400122	7.40382116259129	7.53276525718758	7.27471198978604	7.59079737648785	7.34719193129165	7.58259449790996	-0.031755193333469	0.864797246143368	0.949269846298694
Merged-chr13-24758564-4	chr13	24758508	24758708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020567, intron 2 of 6)	MTD|LTR|ERVL-MaLR	3329.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	4.84771927518967	4.98386874591775	5.1128556692909	4.91148245571722	4.66811356079273	4.98510531424517	4.71129404385212	4.80805202633853	-0.351429735159473	0.284620606312887	0.5964138879162
Merged-chr8-84982823-4	chr8	84982712	84982912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4064.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	6.43952209189064	6.54081787140177	6.92666431863165	6.80466505720361	6.7586803617071	6.14906850092083	6.66562600304077	6.76608702306505	-0.116233363149523	0.632653220271684	0.844047525223388
Merged-chr11-32533199-4	chr11	32533090	32533290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359177)	promoter-TSS (NM_001359177)	-76.0	NM_001359178	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	7.83822914485188	7.96409158654375	7.86940791166307	8.00040767552747	7.75381714110933	7.97865010923812	8.07768019535322	7.63838773819272	-0.0690325374764923	0.695934218017057	0.876974448158558
Merged-chr4-118437438-4	chr4	118437337	118437537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023223)	promoter-TSS (NM_023223)	-94.0	NM_023223	107995.0	Mm.261764	NM_023223	ENSMUSG00000006398	Cdc20	2310042N09Rik|C87100|p55CDC	cell division cycle 20	protein-coding	7.91677742848551	7.87505872955995	7.62926867891034	7.68281746542973	7.71109861462079	7.98585707272474	7.88000921315078	7.66709599142653	0.0460634891007223	0.794517939223899	0.920564651199299
Merged-chr19-45675306-3	chr19	45675208	45675408	+	967.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15115.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	4.1462859384851	3.77198505830434	3.71379092279348	4.07513159460802	3.81428942920033	3.8892631557217	4.00059145777178	3.82131422220999	-0.18563801900626	0.681321801297451	0.869302964750771
Merged-chr17-74717688-4	chr17	74717605	74717805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152817)	promoter-TSS (NM_152817)	-45.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	6.33410128207912	6.49167119421059	5.3437959408617	6.17700964498317	6.36977229143374	6.3006670186715	6.4201056350954	6.29482717507139	0.285204025099852	0.333900627073218	0.644625911590891
Merged-chr7-117481633-3	chr7	117481526	117481726	+	855.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175645, intron 2 of 11)	intron (NM_175645, intron 2 of 11)	100647.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	3.88667313049116	3.6439307253477	3.93204369951278	4.14437470587001	3.37985607259033	3.44016307774503	3.621983387633	3.63417935398064	-1.26969082003254	0.0114869818789532	0.0870786608233436
Merged-chr2-52763218-4	chr2	52763163	52763363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-21114.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	5.24692933691514	5.38613089286263	5.50572097354828	5.26783413848928	5.54492721427371	5.35829821373301	5.22206510835172	5.14527827444107	-0.0206888641581646	0.943804582766301	0.979787407574636
Merged-chr18-4353005-4	chr18	4352898	4353098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040328)	promoter-TSS (NR_040328)	-45.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	8.37805422693862	8.48812366150533	8.27378094521028	8.22154263689404	8.50923814772188	8.5888108580492	8.63290400023848	8.1656765551566	0.183522336780684	0.286738991808299	0.598423544139621
Merged-chr6-135980991-4	chr6	135980893	135981093	+	871.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008171, intron 4 of 14)	intron (NM_008171, intron 4 of 14)	192518.0	NM_008171	14812.0	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	4.20430467894805	4.08989740274437	4.09022971659573	4.4438666092301	5.08353321964919	5.11625931708762	5.03884906156631	4.84470496501374	1.67465544469035	1.31670305414755e-05	0.000353399723571526
Merged-chr2-91070530-7	chr2	91070462	91070662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026721)	promoter-TSS (NM_026721)	-247.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	7.81337583035241	7.71627271823682	7.63998604850487	7.35377435034014	7.58775695279584	7.81727625421912	7.58545970784078	7.78696481192542	0.0843280922705776	0.654445339365002	0.855635636382923
Merged-chr10-94356949-4	chr10	94356873	94357073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	45024.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	7.22407946276458	7.53239180845064	7.51359983978988	7.32019130007033	7.37106028914942	7.51956872104614	7.10871489360872	7.11548528588897	-0.148359072218744	0.450465695896281	0.735338736614162
Merged-chr4-45297134-4	chr4	45297028	45297228	+	980.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027266)	promoter-TSS (NM_027266)	-40.0	NM_027266	69934.0	Mm.46761	NM_027266	ENSMUSG00000035601	Trmt10b	2610042J10Rik|Rg9mtd3|Rnmtd3	tRNA methyltransferase 10B	protein-coding	4.72784503780555	4.77248093530277	4.430846181885	4.52645842864239	4.85393067433397	4.78400363013676	4.8816410203347	4.83448365379705	0.471352939588704	0.16227039796662	0.451435886782433
Merged-chr15-100443704-3	chr15	100443604	100443804	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	20511.0	NR_040351	432982.0	Mm.234608	NM_001034883	ENSMUSG00000087444	Gm5475	EG432982	predicted gene 5475	ncRNA	3.99263198665232	4.11429539062927	4.1262236331461	2.90679251228009	5.63178195053904	5.78310177932731	5.89762226215223	5.60233911010744	4.25245231975593	1.95301801947557e-18	5.28569846419208e-16
Merged-chr14-118178537-4	chr14	118178467	118178667	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	41440.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	5.15849019689412	5.03165248611393	4.99721510689361	5.13938779097621	4.89177907434474	5.06408397349953	5.16370546186607	4.76781202011572	-0.215640279642129	0.493407980361764	0.76414896941188
Merged-chr5-115556383-4	chr5	115556246	115556446	+	906.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133915)	TTS (NM_133915)	-3121.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	4.36224478038451	4.17047013986482	4.07023449240769	3.87173463899338	3.87332400906033	4.04345529686818	4.00516495581844	4.01990093067495	-0.36184782477934	0.405386417738733	0.702273165601277
Merged-chr11-32331233-4	chr11	32331208	32331408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16503.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	6.2174348878222	6.62700481824076	6.50874509813324	6.74044501687474	6.45713698512661	6.49308274457046	6.24616915267798	6.10790693496464	-0.313567810462841	0.189209006409468	0.488066531391588
Merged-chr4-97910602-4	chr4	97910502	97910702	+	911.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	132976.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	4.12281763304363	4.7578053962455	4.45514246301537	4.71532771325912	4.64702588465018	4.24944072485102	4.34937231228285	4.36596125496953	-0.288272856038625	0.479948582267482	0.755620431575299
Merged-chr9-57708953-2	chr9	57708853	57709053	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153799, intron 1 of 6)	CpG	384.0	NM_153799	353190.0	Mm.268104	NM_153799	ENSMUSG00000038957	Edc3	AA517853|Lsm16|Yjdc	enhancer of mRNA decapping 3	protein-coding	2.80731547947794	2.72688064555581	3.16697461619228	2.70397776586327	2.91660297964668	2.98451033297902	2.92800145716836	3.21613212137267	0.680882920886889	0.274940100688025	0.58673095357303
Merged-chr11-50149643-6	chr11	50149481	50149681	+	865.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 6 of 20)	intron (NM_029745, intron 6 of 20)	18221.0	NM_029745	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	3.2710202051074	2.88182235773171	3.2145063491563	3.56766588040686	3.01288854989559	3.26607901103591	3.31244564540035	3.1533683881176	-0.294042579758123	0.629683378854392	0.84234472419062
Merged-chr11-95843157-4	chr11	95843067	95843267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163464)	promoter-TSS (NM_001163464)	-78.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	7.18494978678701	7.51689905564422	7.40528029562641	7.27932785871745	7.39081099628484	7.50310963307837	6.99304398610834	6.94352044071254	-0.159407358481432	0.451944104515778	0.736359368010693
Merged-chr2-139379384-4	chr2	139379285	139379485	+	993.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114528.0	NM_001356507	228677.0	Mm.100450	NM_175467	ENSMUSG00000039092	Sptlc3	C130053K05Rik	serine palmitoyltransferase, long chain base subunit 3	protein-coding	4.33377948351024	3.76552024008249	4.66368830285224	4.7865314790098	4.406181482973	4.51111398745703	4.71102805002082	4.6605415157466	0.269817060223068	0.555424811402588	0.801541008291732
Merged-chr15-51683660-1	chr15	51683560	51683760	+	591.0	f0_balb.idr	Intergenic	Intergenic	181801.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	2.71453160659185	2.51079509501316	2.71492265619353	2.61390948750776	2.49333112286713	2.26712034511316	2.32207043236517	2.46870647479629	-1.39317025216728	0.0652601757013557	0.271916762058584
Merged-chr11-60878882-4	chr11	60878800	60879000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001168507, exon 1 of 3)	5' UTR (NM_001168507, exon 1 of 3)	138.0	NM_173453	216821.0	Mm.28063	NM_173453	ENSMUSG00000043284	Tmem11	5730466P16Rik|AA409091	transmembrane protein 11	protein-coding	7.68549981691186	7.7071920499306	7.64517814729757	7.63051653056689	7.64563536353734	7.70733168511387	7.70512628047771	7.46788819493285	-0.0403924139160064	0.808765593134133	0.926141866753989
Merged-chr14-51089531-4	chr14	51089411	51089611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Tyr-TAC|tRNA|tRNA	-1566.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	7.15224224904248	7.03176127019833	7.21713235177266	7.25903676764793	6.7681258660516	6.52054533888137	6.72584506487745	6.7099733647104	-0.672225855766458	0.00060763882708927	0.00902757755654083
Merged-chr9-99469847-4	chr9	99469767	99469967	+	705.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028123)	promoter-TSS (NR_028123)	-554.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	3.26096701725003	3.49498152521234	3.32260408314907	3.36482870383979	3.4558338821711	3.60630010550617	3.57773874272468	3.37964567541382	0.478882306570252	0.341144103446259	0.650267691585916
Merged-chr10-112774459-3	chr10	112774363	112774563	+	860.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040579, intron 5 of 6)	L1MEf|LINE|L1	47537.0	NR_040579	69355.0	Mm.84337	NR_040579	ENSMUSG00000100314	1700010J16Rik	-	RIKEN cDNA 1700010J16 gene	ncRNA	3.74914145735512	3.42155141311753	3.35968237978473	3.90470053338043	2.77822985261008	2.99872333229633	3.28879603875372	3.10825647280618	-2.3263507330155	0.000428112285299962	0.00679736880556904
Merged-chr2-155826082-3	chr2	155825979	155826179	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010579, intron 2 of 5)	intron (NM_010579, intron 2 of 5)	846.0	NM_010579	16418.0	Mm.271674	NM_010579	ENSMUSG00000027613	Eif6	1110004P11|AA408895|CAB|Itgb4bp|eIF-6|imc-415|p27(BBP)|p27BBP	eukaryotic translation initiation factor 6	protein-coding	4.07117088046803	4.38244053969107	3.59983827654417	3.57764741065525	4.32260906954514	4.58909682587633	4.43507917165338	4.06930122620139	1.04162089947659	0.03206850454146	0.174965819772848
Merged-chr10-81502847-4	chr10	81502734	81502934	+	877.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010304, exon 7 of 7)	3' UTR (NM_010304, exon 7 of 7)	-2697.0	NM_010102	13611.0	Mm.33065	NM_010102	ENSMUSG00000044199	S1pr4	Edg6|Lpc1|S1p4	sphingosine-1-phosphate receptor 4	protein-coding	4.56917286044247	4.43901862458376	4.22065271350574	4.35681794552403	4.43335867290673	4.34829893766706	4.81907422821741	4.40431751292639	0.263431413715408	0.489846925082454	0.761966459176932
Merged-chr5-77246349-4	chr5	77246262	77246462	+	970.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19132.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	5.27315862244469	5.81581463422775	5.9815003297533	4.70618426954534	5.82644404669801	5.80155279191184	5.7642368701736	5.16523262394172	0.226452029649684	0.55759839226019	0.802786163202762
Merged-chr8-91343034-3	chr8	91342934	91343134	+	832.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011936, intron 1 of 8)	intron (NM_011936, intron 1 of 8)	29509.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	3.5076186573392	3.66379767467638	3.75317626674742	3.50973229192056	4.30477356290496	4.03539231641204	4.15981898402375	4.13610518448178	1.58916289305852	0.000261923069776851	0.00453769829587898
Merged-chr13-100852079-2	chr13	100851979	100852179	+	779.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-18652.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	2.91565079281616	2.93339632757159	2.84918171715891	2.67921431007783	3.51732110329268	3.02579818684541	2.96885003085095	2.97810746606342	1.30716724644296	0.0348040055514295	0.184697249024869
Merged-chr11-94677464-4	chr11	94677357	94677557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145828)	promoter-TSS (NM_145828)	36.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	6.497783768562	6.59730042659132	6.27911366952312	6.26488500350588	6.69517649062225	6.74029639667631	6.63740443750902	6.63705369794645	0.391545460362238	0.0664057701774886	0.274680167100387
Merged-chr14-22801542-4	chr14	22801445	22801645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-258747.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	7.20759627800278	7.58686066786791	7.52192374322286	7.82814397126057	7.2474774829708	7.20199813210191	7.46685514446466	7.16891892598014	-0.388945918574361	0.0583255581235814	0.253858527750845
Merged-chr5-139389878-4	chr5	139389798	139389998	+	876.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038703)	promoter-TSS (NM_001038703)	-6.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	4.34399775125704	4.08277254160406	4.4620648081241	4.71851458025771	3.93168732212202	3.71032130764497	4.15089073327727	4.25721860047246	-1.0184243571815	0.0246526837475354	0.147013520146266
Merged-chr5-113810243-4	chr5	113810153	113810353	+	950.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-9901.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	5.75562400309781	5.75098562038873	5.15400871480804	4.60701227609466	5.66347452000244	5.73455196100104	5.55701591890642	5.84065284202082	0.525602703216807	0.150574488915181	0.433320188667166
Merged-chr13-92680239-4	chr13	92680140	92680340	+	845.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172588, intron 2 of 11)	intron (NM_172588, intron 2 of 11)	69102.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	4.1151138442482	4.5414936555121	4.35361950959373	4.63147698614695	4.2040905428775	4.24163602706722	4.09886094872092	4.69115597472526	-0.258446378617674	0.538739859233222	0.791751031472413
Merged-chr10-8795552-4	chr10	8795443	8795643	+	954.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 4 of 19)	intron (NM_175155, intron 4 of 19)	90527.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.1770821389571	4.20364265246252	4.13018227440915	4.12964012050019	4.44434129469097	3.9849048971029	4.51834821320771	4.1751780337505	0.364433768615778	0.368973357226153	0.673345513613766
Merged-chr16-44993549-4	chr16	44993451	44993651	+	921.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49873.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	4.97290905451222	4.71819820029548	5.26133338194626	5.56248423336391	4.72215209789137	5.03904324505296	5.39429322570627	4.73554762948337	-0.346100150260486	0.367894620407484	0.672410928152842
Merged-chr17-33947542-4	chr17	33947456	33947656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020603, intron 10 of 14)	intron (NM_020603, intron 10 of 14)	3932.0	NM_019420	54218.0	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	5.55598905659923	5.95831772978567	5.68793021783854	5.30232890480875	5.42791132620132	5.86218098756388	5.38406679730708	5.84686251645978	0.00758118444131371	0.980291093690119	0.99281244474172
Merged-chr1-154274909-3	chr1	154274814	154275014	+	747.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEg|LINE|L1	-18008.0	NR_040629	78112.0	Mm.401935	NR_040629	ENSMUSG00000099933	4930452N14Rik	-	RIKEN cDNA 4930452N14 gene	ncRNA	3.41916618554045	3.60292738060032	3.69844684368304	3.85208282686359	3.59900490227285	3.70931069420099	3.46775114014747	3.83800851438724	-0.0210986413512538	0.966184269557212	0.988032901699775
Merged-chr6-100214765-4	chr6	100214663	100214863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	72595.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	5.52585370555427	5.29667389695239	5.73379536181506	5.82081999245983	5.53600332857658	5.64549255022012	5.55373863084929	5.86512747171978	0.0505904076033639	0.85901165901563	0.946576014812915
Merged-chr17-31081187-3	chr17	31081078	31081278	+	969.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	23484.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	4.79816528749815	4.41793857431138	4.62008234061054	4.92045380312739	4.1881507616853	4.05430574799786	4.34661380810476	4.92216915293081	-0.637826145988906	0.138484533431984	0.413987825446446
Merged-chr13-55190388-4	chr13	55190308	55190508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-19374.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	7.42931794649679	7.45471118904568	6.79786336155174	7.16155741508871	7.64617747516933	7.61713179954458	7.34515412467201	7.52635495556551	0.407019289564962	0.053464612531655	0.241346883269322
Merged-chr6-125009691-4	chr6	125009629	125009829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347452)	promoter-TSS (NM_001347452)	60.0	NM_175557	269800.0	Mm.108677	NM_175557	ENSMUSG00000038346	Zfp384	BB163993|C130073D16Rik|Ciz|NP|Nmp4	zinc finger protein 384	protein-coding	6.38949313754567	6.77463220513271	6.51209654065263	6.33763400713341	6.65914545266738	6.4131624995888	6.6042628679438	6.57200265960994	0.0905356136206146	0.685072686206675	0.871137429103633
Merged-chr1-64956746-4	chr1	64956619	64956819	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001039493, exon 1 of 8)	5' UTR (NM_001039493, exon 1 of 8)	105.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	4.37819164781927	4.52929519463862	4.55182054245592	4.41772075543747	4.66219039102316	4.72372721173329	4.53086908953279	4.62723897193424	0.379935240250445	0.277341172955483	0.589497071552543
Merged-chr12-33301854-3	chr12	33301767	33301967	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033436)	promoter-TSS (NM_001033436)	-648.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	3.83332223719987	3.99048790511309	3.61951409896239	3.33632388709732	3.97556289190452	3.95554754808322	3.71593177703111	3.72897104311149	0.419397507401677	0.400254966860698	0.698147846003575
Merged-chr19-40994243-4	chr19	40994138	40994338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008528, exon 1 of 17)	5' UTR (NM_008528, exon 1 of 17)	297.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	6.48426416498874	6.31470997366536	6.28529501898674	6.79426675336046	6.6830504648321	6.31785594846375	6.4183193792749	6.72441136934455	0.0716077901832765	0.768640418346166	0.90939721515425
Merged-chr16-33691509-4	chr16	33691403	33691603	+	994.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 1 of 14)	intron (NM_175256, intron 1 of 14)	7037.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	5.48748947822186	5.61140257193191	5.37776557252391	5.49107541969057	5.08406899083513	5.39985555615759	5.29220708233467	5.08321368552519	-0.509372720245103	0.0768048572685648	0.29957252758993
Merged-chr4-155624810-4	chr4	155624735	155624935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040441)	promoter-TSS (NR_040441)	-19.0	NM_001347308	12537.0	Mm.267410	NM_007661	ENSMUSG00000029062	Cdk11b	AA989746|CDK11-p110|CDK11-p46|CDK11-p58|Cdc11b|Cdc2l1|Cdc2l2|Cdk11|p58	cyclin-dependent kinase 11B	protein-coding	8.22635004837438	8.58537380646542	8.23968429330888	7.98942469683532	8.48944354186798	8.79592909108733	8.44368409635329	8.53505406565739	0.376160720366833	0.0444314944867491	0.214909851362805
Merged-chr11-29514538-4	chr11	29514460	29514660	+	899.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163454, intron 1 of 2)	B3A|SINE|B2	473.0	NM_026465	67939.0	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	4.46477772700919	4.04191091337359	4.16351987605635	4.52752639317043	3.90959454256737	4.18787273327041	4.36599146424216	4.53695632042779	-0.143678177375794	0.741458211346102	0.898196909789377
Merged-chr14-31665047-3	chr14	31664952	31665152	+	741.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025295, intron 2 of 3)	intron (NM_025295, intron 2 of 3)	23995.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	3.26601279997027	3.77050359147332	3.55515638170058	3.01487365375328	3.57429800768085	3.50546547762913	3.43356206656906	3.44524904815334	0.209473677371088	0.710979525519997	0.884240356833917
Merged-chr3-84429514-1	chr3	84429414	84429614	+	682.333313	f0_balb.idr	Intergenic	Intergenic	-49593.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	3.87017069558319	3.34729161525806	3.39263196253538	3.49570537337008	2.84560354453906	2.99549927526455	2.79778067600578	3.02814461826601	-2.72214029495196	6.74037402080414e-05	0.00145650601829635
Merged-chr1-165718532-4	chr1	165718414	165718614	+	938.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10420.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	4.6344205390444	4.57634258606359	4.85638975661708	4.97065656692134	4.70002775581363	4.59413557197982	4.79894314913902	4.46033996147592	-0.286511652157748	0.4226274857335	0.714839748072846
Merged-chr17-21516480-4	chr17	21516367	21516567	+	878.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19072.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	4.14071078664185	3.79716139018322	4.18601459731268	3.84699988272194	4.10133198181004	4.22029722391134	4.12296444614724	4.3084413815756	0.516949901492439	0.21815711109147	0.525222560811086
Merged-chr3-127949078-4	chr3	127948990	127949190	+	806.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040552, intron 4 of 4)	intron (NR_040552, intron 4 of 4)	32919.0	NR_040552	329753.0	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	4.0606640834668	4.38335154560633	4.37442163668345	4.03383480033693	3.89358962344157	4.13406578949753	4.31405714716257	4.33132113195481	-0.107788920564225	0.799818989141477	0.922665648246429
Merged-chr17-27702667-3	chr17	27702592	27702792	+	703.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286743, intron 2 of 9)	CpG	17453.0	NM_178365	23969.0	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	3.44882297564524	3.66428895854667	3.33254032404101	3.10611095612696	3.64959805524088	3.50717935426505	3.48975237652571	3.39043582823964	0.408684405736677	0.444040808656483	0.730462472425057
Merged-chr13-94702811-4	chr13	94702817	94703017	+	942.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-86026.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	4.12531738473948	4.47883483335242	4.49886749534746	4.77619277757902	4.37596248679398	4.35683858901591	4.4374745781997	4.64813987011125	-0.117276402579735	0.76870956958604	0.90939721515425
Merged-chr10-15297477-4	chr10	15297361	15297561	+	958.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-494316.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	4.86406798064767	4.68390910808729	4.78901858038814	5.47037550621217	4.80083152045853	4.80139309702836	5.16209465285152	4.70540539388342	-0.26934712268486	0.482391642374383	0.75723418393445
Merged-chr1-184606083-4	chr1	184605986	184606186	+	882.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48395.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	4.25208064163771	4.29302849877256	4.43887115216258	5.07231879065177	4.39672867142859	4.43061152012314	4.50193042834438	4.63606496066002	-0.207133215023721	0.629255126690879	0.842098331915745
Merged-chr14-70395272-4	chr14	70395154	70395354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021308, intron 15 of 22)	intron (NM_021308, intron 15 of 22)	33840.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	8.36294146178065	8.26514757450404	8.58020535431888	8.42718764025046	8.07648823546837	8.48728100075643	8.43273909647871	8.26429171768517	-0.118590726514026	0.488934816995195	0.76154601498722
Merged-chr17-67260188-4	chr17	67260087	67260287	+	955.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	94272.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	4.81528849691862	4.25139718778057	4.6994008338317	4.60963902716311	5.02601863313715	4.75058105308851	5.14437384840938	5.24828714973582	0.91237203344919	0.00975058588497978	0.0775460282354163
Merged-chr2-160070575-4	chr2	160070481	160070681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53928.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	7.70787187499508	7.81968256887156	7.65058389712418	7.53506838269391	7.90780938234095	7.96570397871624	7.44912659847359	7.88611161931235	0.184464092899753	0.32859459142674	0.640093990781718
Merged-chr4-126103295-4	chr4	126103198	126103398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145827)	promoter-TSS (NM_001145827)	-659.0	NM_028800	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	7.45478694657059	7.58443027160948	7.30424313167242	7.23996843354193	7.60782535388332	7.66138779445262	7.54556762011167	7.36207912280418	0.203943721446136	0.271020363467656	0.582795057102241
Merged-chr9-66882047-4	chr9	66881959	66882159	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	37646.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	5.3299882038852	5.1311372492274	5.46086861223771	5.49617351766126	4.89330507152337	4.9733326590583	5.09750306938602	4.23253549286412	-1.00576668303067	0.00594202308431322	0.0538854963840401
Merged-chr2-62640047-3	chr2	62639929	62640129	+	677.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164477, intron 1 of 14)	intron (NM_001164477, intron 1 of 14)	6226.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	3.41432742057081	3.44111544363998	3.29367718796598	3.42159440870524	3.64420016910848	3.74494714658191	3.45790614503704	3.41299256935562	0.5843832873672	0.240964858580437	0.551606022669871
Merged-chr8-45934889-4	chr8	45934807	45935007	+	924.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033246, intron 1 of 6)	intron (NM_001033246, intron 1 of 6)	258.0	NM_001033246	212392.0	Mm.296649	NM_001033246	ENSMUSG00000071104	Ccdc110	Gm172	coiled-coil domain containing 110	protein-coding	4.74089289110483	4.69168194225141	4.7416699074148	4.75775780316359	4.4191869372431	4.63044608737685	4.85727836036706	4.62301753723092	-0.217183471278189	0.533001853300783	0.788398805429988
Merged-chr5-140379399-4	chr5	140379301	140379501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	9907.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	6.43495287731165	5.94709555865928	6.05989146404478	6.5661513562921	6.12959559055616	6.25812874293316	6.21124592229349	6.11962705962574	-0.173946496899105	0.496041229078875	0.766048551550322
Merged-chr2-130667736-4	chr2	130667641	130667841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025922)	promoter-TSS (NM_025922)	-100.0	NM_025922	16434.0	Mm.21399	NM_025922	ENSMUSG00000074797	Itpa	2010016I08Rik|AU020102|ITPase|Itp|NTPase	inosine triphosphatase (nucleoside triphosphate pyrophosphatase)	protein-coding	5.82604999646755	5.71124775605888	5.57893746947517	5.79730618417467	5.87517621309153	5.54911826015604	5.63009563823258	5.46050917524571	-0.141461354752375	0.598729293111834	0.826053129391413
Merged-chr4-107167918-1	chr4	107167818	107168018	+	566.0	f0_balb.idr	intron (NM_025617, intron 2 of 4)	intron (NM_025617, intron 2 of 4)	10448.0	NM_025617	66526.0	Mm.246956	NM_025617	ENSMUSG00000028619	Tceanc2	2210010B22Rik|2210012G02Rik|6330404A07Rik|AU015593|Tdeanc2	transcription elongation factor A (SII) N-terminal and central domain containing 2	protein-coding	3.06144470352317	3.18524722067274	3.11867864939512	3.05939582225827	2.8356855757446	2.91192413200574	2.86587085109163	3.0602360582937	-0.811643760306642	0.171780983799336	0.465089336091783
Merged-chr2-30048849-4	chr2	30048754	30048954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008498)	promoter-TSS (NM_001008498)	25.0	NM_001008498	71820.0	Mm.88053	NM_001008498	ENSMUSG00000039715	Wdr34	3200002I06Rik	WD repeat domain 34	protein-coding	6.11954825864091	5.64600033546867	5.87900256962699	5.83363536239884	6.16387106263945	6.14864169465205	5.91916969478481	6.61891377820975	0.564661982507956	0.0354884732137621	0.186980772553081
Merged-chr11-100939556-4	chr11	100939463	100939663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011486)	promoter-TSS (NM_011486)	-23.0	NM_011486	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	8.8052459151676	9.01101423338361	8.69127431564074	8.57658827831581	9.07493804567724	9.3226020259233	9.0530846358418	8.81324962127591	0.372040217703399	0.0346522184992183	0.184298516937481
Merged-chr18-60714885-4	chr18	60714769	60714969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	12697.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	6.31098548640983	6.29234937256007	6.25871468956236	6.46441624140181	5.90966835617763	5.78827148895792	5.84976714749903	5.96997550044623	-0.714270513924645	0.00216688228010916	0.0248651521783469
Merged-chr7-25282431-3	chr7	25282338	25282538	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027882, exon 1 of 20)	5' UTR (NM_027882, exon 1 of 20)	259.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	7.15044860021184	7.27014021313729	7.15168916244838	6.81340005740535	7.25846344595032	7.42801873466249	7.32660249012665	7.14667149073438	0.268648401739146	0.180270808124781	0.476611410681675
Merged-chr15-87116921-3	chr15	87116824	87117024	+	625.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-427375.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	3.17947538147073	3.09402025256341	3.37606476022404	3.78662426774744	3.58880147525733	3.66406560370051	3.63405912476152	3.74230464061549	0.799264513811944	0.172002009537984	0.465252629537357
Merged-chr19-10880919-3	chr19	10880815	10881015	+	725.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134142, intron 1 of 3)	intron (NM_134142, intron 1 of 3)	828.0	NM_134142	68539.0	Mm.251890	NM_134142	ENSMUSG00000034659	Tmem109	1110006I15Rik|AA958958|C77652	transmembrane protein 109	protein-coding	3.38996290229697	3.52567278952886	3.17406462068594	2.93358571669171	3.11272670717665	3.09448662002967	3.04033102717133	2.98296253913931	-0.82407966654791	0.174062926319377	0.468328294556301
Merged-chr10-16995185-3	chr10	16995077	16995277	+	806.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038020, intron 1 of 8)	intron (NR_038020, intron 1 of 8)	100605.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	3.56354111572644	3.33161957936137	3.45173376383694	3.4039966963873	3.92519336120741	3.92967457289651	3.31766258303938	3.32742840524421	0.721920649515746	0.179579018817622	0.475824186021704
Merged-chr19-41332402-4	chr19	41332270	41332470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	52700.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	6.96439264688339	6.42120278900708	6.63278533791012	6.67504478073187	6.88414325097794	6.90103632476869	6.82935916947866	6.74901798947433	0.226392387443243	0.286485386346189	0.598138663461673
Merged-chr9-99499582-4	chr9	99499485	99499685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 15 of 21)	intron (NM_028768, intron 15 of 21)	29164.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	6.1475129675028	6.3975019038007	6.35550563277532	6.24629068271836	6.10446971996187	6.1033915198976	6.37366234166594	6.08153184239953	-0.181731200829429	0.42852419549574	0.719554699485522
Merged-chr14-19713243-4	chr14	19713131	19713331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-38026.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	7.05167834304295	6.71193757589158	6.78482439272256	6.77925752290223	6.71151208612102	6.74532537782243	6.89728023358148	6.80814195300046	-0.0603240218703168	0.765122159899297	0.908055526794032
Merged-chr10-118820068-4	chr10	118819975	118820175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48828.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	6.74600700746798	6.59094071751365	7.13120664968999	7.18850381623096	6.12217339877832	6.13537018618393	6.75395387307911	6.11983624527505	-0.914588451060831	0.0005751689190552	0.00863711993447892
Merged-chr13-97205374-6	chr13	97205306	97205506	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7049.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	4.4885953820715	4.36493058040892	3.95686759459195	4.30547010591069	4.08005540090546	4.53769727589007	4.58097472247748	4.70431520203118	0.452638857851891	0.277379241765687	0.589510804983801
Merged-chr5-114774711-4	chr5	114774615	114774815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026718)	promoter-TSS (NM_026718)	268.0	NR_027872	67642.0	Mm.482535	NM_175120	ENSMUSG00000092183	4930515G01Rik	-	RIKEN cDNA 4930515G01 gene	ncRNA	6.79707660722139	6.89986291765952	6.33621377354208	6.37007549466529	6.90772847448609	6.946484426658	6.60242378602517	6.88651518888327	0.322068429999713	0.169560404707818	0.462224351679284
Merged-chr5-31054774-4	chr5	31054584	31054784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023525)	promoter-TSS (NM_023525)	-96.0	NM_023525	69719.0	Mm.305535	NM_023525	ENSMUSG00000013629	Cad	2410008J01Rik|AU018859|Cpad	carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	protein-coding	6.12785286369313	6.03007534708107	5.73477585446799	6.08938721710972	5.97108445311466	6.36161026087572	6.26418870517191	5.93130490532669	0.196682531478182	0.436453820441779	0.72511335456143
Merged-chr6-84008593-2	chr6	84008493	84008693	+	886.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077694)	promoter-TSS (NM_001077694)	-5.0	NM_001077694	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	2.97187795150147	3.08555347697562	2.97221948269359	2.82355954265137	3.21764806138789	3.08135628290158	3.02418867543338	3.25742394803864	0.788882554972573	0.166743922633954	0.45810154395954
Merged-chr1-193905936-3	chr1	193905828	193906028	+	938.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	316831.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	4.50848226966306	4.35810451989277	3.83061952733547	4.02771155571588	3.97539955208736	4.21007283119918	3.50747765546069	3.58515819663975	-0.945777746717622	0.0694469791703442	0.281858153161122
Merged-chr15-93379476-3	chr15	93379377	93379577	+	973.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	18857.0	NM_001347097	67197.0	Mm.293181	NM_026025	ENSMUSG00000022635	Zcrb1	2700088M22Rik|Madp-1	zinc finger CCHC-type and RNA binding motif 1	protein-coding	4.00738596576207	3.75955330481269	3.46973583045482	3.67659768986168	3.91545736255111	3.71458751702351	3.85203933078657	4.16986117779589	0.532003903646122	0.259882673311899	0.571684145019647
Merged-chr11-114995024-3	chr11	114994932	114995132	+	826.311096	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	-5146.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	3.41013915318771	3.88867664691163	4.00151049960987	3.48526372310879	3.02496943417012	3.75962390660371	3.57060481390107	3.34523457241527	-0.858312628389441	0.145858832687209	0.42565232470349
Merged-chr4-109676586-4	chr4	109676495	109676695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007983)	promoter-TSS (NM_007983)	-32.0	NM_007983	14084.0	Mm.318259	NM_007983	ENSMUSG00000010517	Faf1	AA408698|Dffrx|Fam	Fas-associated factor 1	protein-coding	7.69969967178574	7.63535547895875	7.54821650430225	7.71126847407835	7.51616444286022	7.64151370882062	7.59797870513792	7.26085647809174	-0.187475859174667	0.291049157751391	0.603331333534854
Merged-chr16-87625531-4	chr16	87625430	87625630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72200.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	8.56396254120409	8.57494651314706	8.63848284879486	8.52199328375626	8.63480754383181	8.74321006466035	8.65529232111607	8.26962114975989	0.018440826623833	0.910064914508334	0.966671146059764
Merged-chr15-97908305-4	chr15	97908150	97908350	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009504)	promoter-TSS (NM_009504)	46.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	4.84523930834545	4.52849421945588	5.16188153722269	4.59082116229948	4.94196089303507	4.9080287658411	4.82277076203297	4.64959002527849	0.0981337874542218	0.785204052322792	0.916425455265614
Merged-chr10-76345375-4	chr10	76345280	76345480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081419)	promoter-TSS (NM_001081419)	-89.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	7.34012841097072	7.22020072788609	6.91847300742792	7.45098286608897	7.63887917839989	7.50821664925096	7.56258572225467	7.33628397571143	0.348620675952914	0.0803063684083612	0.307170025092092
Merged-chr5-114854884-1	chr5	114854784	114854984	+	545.0	f1_balb.idr	intron (NM_026263, intron 1 of 11)	intron (NM_026263, intron 1 of 11)	1170.0	NM_026263	67593.0	Mm.251409	NM_026263	ENSMUSG00000029564	4930519G04Rik	1700014B12Rik	RIKEN cDNA 4930519G04 gene	protein-coding	3.20670033511106	2.80910385725264	3.31935084727178	3.30905566867438	3.07629673447466	3.37786292437726	3.35766354378186	3.14556505378164	0.233145271620311	0.696043534216062	0.877034567568863
Merged-chr3-7502907-4	chr3	7502805	7503005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173181)	promoter-TSS (NM_173181)	-521.0	NM_173181	67306.0	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	5.76400951856618	5.29286582764044	6.03169360875217	6.01632124252948	5.85325752640356	5.96473149063326	5.98068435617022	5.60317867964262	0.0673663649550684	0.817496785394637	0.929901776869435
Merged-chr8-123478576-4	chr8	123478510	123478710	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028260, intron 1 of 15)	RMER15|LTR|ERVL	748.0	NR_028260	114896.0	Mm.287475	NM_054070	ENSMUSG00000031967	Afg3l1	1700047G05Rik|3110061K15Rik	AFG3-like AAA ATPase 1	protein-coding	4.98503882897806	4.89094091693413	4.85667633168648	4.6450295135591	4.37589442913558	4.63866396914241	4.44100636201481	4.74702939835054	-0.620694136550435	0.0843447896427654	0.315976509639893
Merged-chr8-121951153-4	chr8	121951106	121951306	+	988.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016812, intron 1 of 13)	CpG	714.0	NM_001285983	53325.0	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	4.62861027215751	4.67326084914528	4.24477000924189	4.84328853254767	4.93641397156669	4.92183317155249	4.93413903390433	4.92250979931034	0.601003612280972	0.0925647363741814	0.332787224122745
Merged-chr2-116955114-4	chr2	116955007	116955207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54955.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	6.46205437758739	6.72844133088486	6.72639476210426	6.17592723980447	5.95643629604086	6.15051616601097	6.15983194877155	5.96734388544533	-0.71479082105464	0.00456413140330587	0.0443751275994958
Merged-chr7-125444882-4	chr7	125444767	125444967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029842, intron 1 of 7)	CpG	247.0	NM_029842	77035.0	Mm.307239	NM_029842	ENSMUSG00000030752	Kdm8	3110005O21Rik|Jmjd5	lysine (K)-specific demethylase 8	protein-coding	6.60383311224937	6.90408709150753	6.62083810007533	6.09974025861777	6.7250720809453	6.95890609910592	6.70645748883404	6.73602926531021	0.297886477373912	0.228978058474572	0.537900616657055
Merged-chr12-73680408-4	chr12	73680315	73680515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	95619.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	6.16399598453339	5.72715582021808	5.63590239758804	6.22479417152793	5.79968225491644	5.60803538906564	5.76105351597837	5.60427996743334	-0.448720247369041	0.109313512402641	0.365153157665133
Merged-chr9-124146509-4	chr9	124146403	124146603	+	957.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	24960.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	4.53464133173032	4.74011194653871	4.43949815851214	4.85333848438975	4.95605900617092	5.29050217559596	4.68654858569519	5.17451684189572	0.748782112452418	0.0384710805761296	0.196761733443151
Merged-chr4-135942370-4	chr4	135942284	135942484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-4064.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	6.93133215680014	7.23789541648645	6.90669444274448	6.93458159834388	6.7295036724705	7.0567622613659	6.32680924108111	6.7042940957936	-0.396824230560686	0.0833876502035062	0.313866104783229
Merged-chr11-67589065-4	chr11	67588948	67589148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109657, intron 1 of 13)	intron (NM_001109657, intron 1 of 13)	2548.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	6.63200916488701	6.4537249296596	6.29449137671332	6.3029002845185	6.76065991180234	6.52810580684369	6.22305442017482	6.58314406185324	0.184635309846614	0.427887053837924	0.719012812581401
Merged-chr7-99833268-3	chr7	99833178	99833378	+	720.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4861.0	NM_016720	50877.0	Mm.103703	NM_016720	ENSMUSG00000035239	Neu3	-	neuraminidase 3	protein-coding	2.90487681389694	3.05430244188276	2.97472040786106	2.98545916719527	3.38825699445264	3.27639958887891	3.09285229298533	3.47324636983314	1.29118776653696	0.0213790033595286	0.133837825868767
Merged-chr1-191153264-4	chr1	191153161	191153361	+	932.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11556.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	4.17362308514654	4.39432815272602	4.31624448030752	4.33566340624269	4.68262878459635	4.30044221705828	4.20532598012096	4.55725178493073	0.35247561313948	0.364873030524063	0.669636959088136
Merged-chr5-97345933-4	chr5	97345826	97346026	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46404.0	NM_001033191	97243.0	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	4.45931391989377	4.74033455288304	4.90706319897272	4.78937122378896	4.78060206915569	4.44808182540785	4.52559255566291	4.26572395014142	-0.446348529937502	0.237678986310963	0.547836940728215
Merged-chr6-98513477-4	chr6	98513376	98513576	+	966.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-170722.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	5.44926422834505	5.51918372118395	4.85235929284504	5.17896137459101	4.87086473562055	5.14367957572011	5.01439117273297	4.84918204359565	-0.578319368110607	0.0823840323734897	0.311617230328017
Merged-chr4-119966909-4	chr4	119966808	119967008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	152230.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	8.74159084188345	9.06364835740783	8.90212199650633	8.54708166153725	8.52468920337055	8.71413391324259	8.61774153561502	8.21557556164695	-0.368446221020133	0.0475947689777901	0.225009834024317
Merged-chr10-127063453-4	chr10	127063355	127063555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009870)	promoter-TSS (NM_009870)	-80.0	NM_009870	12567.0	Mm.6839	NM_009870	ENSMUSG00000006728	Cdk4	Crk3	cyclin-dependent kinase 4	protein-coding	8.05412797526489	8.13619540122146	7.83634907985669	7.74713901052688	8.11459740780936	8.20679973723218	7.95741245163561	7.9971339543039	0.161843111663276	0.357332039040102	0.663494847536382
Merged-chr1-63119903-4	chr1	63119812	63120012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045914, intron 1 of 3)	intron (NR_045914, intron 1 of 3)	5172.0	NR_045914	100380944.0	Mm.392955	NR_045914	ENSMUSG00000084799	Ino80dos	Gm11602	INO80 complex subunit D, opposite strand	ncRNA	5.97105847667526	5.93564463000053	5.53170354793456	5.87077639739165	5.88851108681466	5.58804746422064	5.69267579495232	5.66618123521779	-0.194723564563912	0.462174920862541	0.743740927203717
Merged-chr11-54711106-3	chr11	54710998	54711198	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76605.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	3.61886035431343	3.52569723727924	3.51331706056014	3.45124430016947	3.46738210212741	3.44935080979415	3.55312460036005	3.71503563065565	0.0839461032160607	0.863096379541239	0.94847059222142
Merged-chr16-24653264-4	chr16	24653177	24653377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-68578.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	6.05410454265852	5.73016845236742	5.74418985192734	6.15831276424515	5.56935785054586	5.78861817770928	5.8791342882641	5.66226969886077	-0.366739264038541	0.171719770757053	0.465087374685055
Merged-chr12-21368585-4	chr12	21368577	21368777	+	996.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291871, intron 1 of 18)	intron (NM_001291871, intron 1 of 18)	4955.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	4.29377029301922	4.22956067548022	4.85152364850475	4.45674398972705	6.00786377940444	5.77273450307875	5.91420616447639	5.52099709583682	2.48958075794746	1.86391987299987e-13	2.29934060035109e-11
Merged-chr11-98960521-4	chr11	98960384	98960584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001176528)	promoter-TSS (NM_001176528)	13.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	5.69792444484363	5.75066748882252	5.45808927094931	5.38748840643396	5.98475670010116	5.41300115015719	5.33999957354128	5.74263458728095	0.146353010024695	0.626727609402273	0.840727549606008
Merged-chr3-65941241-4	chr3	65941134	65941334	+	987.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	17015.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	5.65335933171371	6.00925142412888	5.75765156169509	5.80884905459685	5.95853470103561	6.09441791063998	5.99390820921263	5.08749783423946	0.0428048774397592	0.891050814185983	0.959254414522706
Merged-chr6-85451974-4	chr6	85451873	85452073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163427)	promoter-TSS (NM_001163427)	-3.0	NR_028081	73327.0	Mm.379221	NM_028505	ENSMUSG00000030008	Pradc1	1700040I03Rik|Pap21	protease-associated domain containing 1	protein-coding	6.95183293798071	7.18173849688145	6.771598609312	6.99103033737423	7.07331366002254	6.90343106374986	7.17448128804555	7.03592661961272	0.0915545833377292	0.643559707965802	0.849787035051413
Merged-chr15-73134759-3	chr15	73134652	73134852	+	563.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 3 of 18)	MTD|LTR|ERVL-MaLR	44340.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	3.30636241336488	3.3106281663228	3.30674411441634	3.68567227542173	3.49887230583009	3.75805092694049	3.62493856210739	3.48245922256014	0.523937819600679	0.323902446559022	0.635387963170033
Merged-chr9-111608911-4	chr9	111608797	111608997	+	817.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324546, intron 1 of 9)	intron (NM_001324546, intron 1 of 9)	81451.0	NM_016853	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	3.81322534674442	3.67255849969592	3.81375329496277	3.63727680141154	3.9607201796561	4.40917966213906	4.25964906048506	4.23777205198197	1.33367432182632	0.00198470609594307	0.0232465682414237
Merged-chr10-118894034-4	chr10	118893950	118894150	+	938.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25147.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	4.8250659809869	4.44376634788219	4.7906765965306	4.69366875626393	4.62639899963851	4.59812712489541	4.99197739471134	4.67554821752934	0.0826833460926184	0.815301271654993	0.928718235748118
Merged-chr7-96153226-3	chr7	96153138	96153338	+	788.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18006.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	3.41242675795971	3.45035940953648	3.77660853791431	3.69770713246396	2.77307064058127	2.9384786175331	2.89808231449895	3.04992562399883	-3.12553351724398	1.00103620210666e-05	0.000275319767502897
Merged-chr6-145866739-4	chr6	145866632	145866832	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1312.0	NM_001271768	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	6.39838452460327	5.98495838810301	6.12985677536922	6.71991599819236	5.04629430554567	5.31406592663437	5.25295530095901	5.59643365557572	-1.7177102361279	1.44961726316593e-08	7.45536901552657e-07
Merged-chr12-95741534-3	chr12	95741414	95741614	+	791.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	49288.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	2.81480127900523	2.82374812517142	2.98701720396886	2.80941809910782	2.5819666895914	2.64727995858118	2.67814492222729	2.87352181983628	-0.785712685103385	0.226359401128371	0.534963669995229
Merged-chr16-57398799-3	chr16	57398688	57398888	+	834.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	45511.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	3.52626731051468	3.34917606932908	3.46957108245336	3.30100283293165	3.96003621744733	3.46231654884684	3.51291972126899	3.86595769469284	1.02582787816928	0.0414312138987282	0.206119825427153
Merged-chr11-31803628-3	chr11	31803511	31803711	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102312, intron 1 of 4)	intron (NR_102312, intron 1 of 4)	20936.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	4.73619955768774	4.72476436747979	4.86755718931443	4.94362427289652	3.98196971972142	4.2050854416723	4.16899006136388	4.23559031614335	-1.62706952258615	2.3870854900368e-05	0.000595341128575086
Merged-chr10-94552327-4	chr10	94552222	94552422	+	985.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	1402.0	NM_001359760	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.4163402950518	5.03266885008993	5.33325047726722	5.67779802949652	5.32372913744772	4.89618705617198	5.24782937920258	5.14278667939571	-0.418209966307476	0.198218305649801	0.499715972864178
Merged-chr15-64256746-3	chr15	64256647	64256847	+	801.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	55926.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	3.89059822096699	3.79220615150086	3.99248587005861	4.24821645811278	3.81871086980587	4.29938380679014	4.06837777971825	3.94051698252017	0.0789110520764604	0.862414183037213	0.948130778673016
Merged-chr13-113611066-2	chr13	113610972	113611172	+	905.0	f0_balb.idr|f0_c57.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	7492.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	4.78256192840584	4.80964720433872	4.58841515644985	4.06234335440274	4.97785353224316	4.76427716506127	4.760287663766	4.78013384033767	0.531218910079942	0.173316631423824	0.46736264995137
Merged-chr7-102019510-4	chr7	102019437	102019637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001360748, exon 9 of 9)	3' UTR (NM_001360748, exon 9 of 9)	-1382.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	7.92157840424408	8.40718774525738	8.26212481270419	7.52996056634021	7.75103579571302	7.82991755870048	7.62299393208962	6.9337991283106	-0.636374345424601	0.014946197879613	0.104545540376668
Merged-chr10-40477075-4	chr10	40476976	40477176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198164, intron 10 of 11)	intron (NM_198164, intron 10 of 11)	-93286.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	6.58149988507589	6.48643404949728	6.51955146311979	6.77341296329933	6.33829264756868	6.27971929126642	6.17741419194896	6.49861707644495	-0.40834155903543	0.0652733512723154	0.271946976797788
Merged-chr18-4790510-4	chr18	4790436	4790636	+	834.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-21950.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	3.64230827995569	3.93897995945004	3.99258323671125	3.91362358940888	3.66576085276094	3.57411329628839	3.68460188171654	3.99006820746427	-0.422791376068071	0.368258979537849	0.672721296810859
Merged-chr11-78301512-4	chr11	78301407	78301607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017407)	promoter-TSS (NM_017407)	-84.0	NM_017407	54141.0	Mm.24250	NM_017407	ENSMUSG00000002055	Spag5	AI874642|D11Bhm180e|Deepest|MAP126|Mastrin|S17	sperm associated antigen 5	protein-coding	6.13409327290328	6.20604426195951	5.52547969618994	5.96411628574811	6.31239354675357	5.87860263867495	6.12279635125029	5.66885793302931	0.070002836566026	0.807650203075443	0.92582798360164
Merged-chr2-160732126-1	chr2	160732026	160732226	+	607.0	f0_c57.idr	intron (NM_021280, intron 2 of 33)	CpG-8784	816.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	3.6439534752359	3.56778052097896	3.95149220919457	3.61626550863102	4.13818022819696	3.82006781043792	3.79127501758113	3.90277267642823	0.674760468142921	0.143018483074141	0.421101755219577
Merged-chr15-74989479-4	chr15	74989391	74989591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6061.0	NM_020498	57248.0	Mm.358339	NM_020498	ENSMUSG00000022586	Ly6i	AI789751|Ly-6I|Ly-6M	lymphocyte antigen 6 complex, locus I	protein-coding	5.78413985162509	5.46709083029389	5.68763153187443	5.2103880836386	5.95644890285922	5.86258384800276	5.63333161386943	5.89307706458325	0.521397461455726	0.0648724618155948	0.270888006545361
Merged-chr6-28899043-3	chr6	28898993	28899193	+	889.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67346.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	3.67362986248029	3.80113340343511	3.51680465633188	3.27308667537731	3.73618743111605	3.16734144603082	3.44681571964456	3.72030269921045	-0.106844069695766	0.847630993894916	0.942343248956598
Merged-chr1-155417025-3	chr1	155416924	155417124	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 1 of 14)	CpG	420.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	5.42022088459054	5.60729597748098	5.52939000696376	5.19917740118986	5.24507252906058	5.24381542586474	5.36569270061548	5.47258729124388	-0.181479271753742	0.535256292916643	0.789648104016425
Merged-chr9-119401337-4	chr9	119401159	119401359	+	917.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313757)	promoter-TSS (NM_001313757)	-919.0	NM_007397	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	3.68860008385931	3.39782325063108	3.6321157471496	3.59924029552471	4.0304806136205	4.0176799747963	4.09350528221033	3.84428403267281	1.21148112047384	0.00741219190148541	0.0634659457904282
Merged-chr9-116151506-1	chr9	116151406	116151606	+	757.5	f0_balb.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	23857.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	3.17141066582883	3.32179513226742	3.51915189353991	3.35761460802209	2.60991681243124	2.88535244788738	2.97825464718011	2.77511507111475	-2.55372733157606	0.00028991798177476	0.00493567855172103
Merged-chr1-144349198-2	chr1	144349098	144349298	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-100094.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	2.86660069813902	2.6549311551698	2.8117713187191	2.62197384111457	2.42365398233096	2.59714217543058	2.62098043971967	2.41802229152604	-1.20161386272943	0.0883148730748264	0.324229644656131
Merged-chr16-36641202-4	chr16	36641110	36641310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	24867.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	7.43865931290192	7.33165988942491	7.39166152727467	7.22367529591942	7.58756280223205	7.41169689327443	7.38407978160996	7.20724223268533	0.0943674640487907	0.610503998456374	0.831771382476959
Merged-chr12-69297253-1	chr12	69297153	69297353	+	699.666687	f0_c57.idr	intron (NM_027117, intron 1 of 12)	CpG	572.0	NM_027117	69554.0	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	4.24138031447984	4.10631109222445	3.95176386246063	4.29522084873886	4.34433033561254	4.12773868718423	4.22313010152835	4.14985788778034	0.134920209910164	0.739776623516328	0.897537913555384
Merged-chr8-70754597-4	chr8	70754493	70754693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009001)	promoter-TSS (NM_009001)	-86.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	8.76779276740423	8.71925418878737	8.75700282983581	8.87025104373188	8.53763478668471	8.42916807234485	8.64184813381681	8.35154141576884	-0.358855933857248	0.0174811535107146	0.116845809535088
Merged-chr3-81981727-4	chr3	81981617	81981817	+	928.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5989.0	NM_019911	56720.0	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	4.40590631696824	5.04773361649953	4.62657949187458	5.00781859111745	4.51046127732911	4.67545761648761	4.3874932190818	4.81117945452734	-0.448345713060169	0.242932429530415	0.553871031505147
Merged-chr9-35267812-4	chr9	35267769	35267969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175411)	promoter-TSS (NM_175411)	-12.0	NM_028040	71989.0	Mm.273515	NM_028040	ENSMUSG00000032044	Rpusd4	2410001E19Rik	RNA pseudouridylate synthase domain containing 4	protein-coding	7.59133477969753	7.44515658113355	7.41587398270106	7.2942051258938	7.09898636203644	7.05714163182511	7.04464318727633	7.30170883862538	-0.411384898968895	0.0277599625296884	0.159143554518419
Merged-chr4-133615687-3	chr4	133615580	133615780	+	921.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 2 of 7)	intron (NM_001017968, intron 2 of 7)	-13512.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	5.29037491899263	4.72377484515236	5.84738569569009	5.93834344275109	3.4629843049442	3.99319140847851	3.90725045394248	3.77652287700273	-4.64770480615235	8.7420148185413e-15	1.37059002812544e-12
Merged-chr9-42123707-3	chr9	42123597	42123797	+	695.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011436, intron 1 of 47)	intron (NM_011436, intron 1 of 47)	600.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	2.9227168810548	2.77266994539396	2.77475030961892	2.63513677164772	3.5668709817308	3.29534818353988	3.47167488803115	3.2342369038467	2.69426959759942	5.86776129382136e-06	0.000171032506606433
Merged-chr7-19076731-4	chr7	19076629	19076829	+	790.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010058, intron 1 of 4)	intron (NM_010058, intron 1 of 4)	529.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	3.35916534882441	3.63255278971684	3.87602517291715	3.60293608376935	3.94718841595747	3.67245886499316	3.90507059404355	4.09048836749963	0.836180757724848	0.0797039137855547	0.305742454430671
Merged-chr5-23844165-4	chr5	23844072	23844272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025394)	promoter-TSS (NM_025394)	-27.0	NM_025394	66169.0	Mm.291868	NM_025394	ENSMUSG00000028998	Tomm7	1110020J08Rik|AW047273|Tom7	translocase of outer mitochondrial membrane 7	protein-coding	7.66774411243601	7.79268927055422	7.20893957224896	7.72959560426854	8.06284528981425	8.1151312448848	8.0424061943527	7.91141916625631	0.530485034818294	0.00495140570750932	0.0472054790858299
Merged-chr11-115699463-4	chr11	115699367	115699567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313937)	promoter-TSS (NM_001313937)	67.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	8.20758735555455	8.02887389479064	8.43268334662377	8.04156139218467	7.97040480842452	7.94303479678668	8.14664637574243	8.13764449497535	-0.166912208621031	0.337961185762631	0.647718939249696
Merged-chr17-83703493-4	chr17	83703374	83703574	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2689.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	5.45085510455676	4.84061169480351	5.36561432430783	5.43237631650983	5.24629180557843	5.31712345412556	5.60382376340898	5.86810439655954	0.402934737267894	0.218637165810305	0.525920308403926
Merged-chr6-57521078-4	chr6	57520976	57521176	+	912.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175523, intron 3 of 6)	intron (NM_175523, intron 3 of 6)	14350.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	4.27863265926982	4.61732806744617	4.54791142797494	4.70554116704977	4.54547028224167	4.35628719378777	4.81197354459324	4.50397655480327	0.0145781763239593	0.969073634158609	0.988869722693227
Merged-chr3-65891289-3	chr3	65891181	65891381	+	832.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66968.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	3.14967475156196	3.41193369001296	3.42341113061497	3.27816464683417	4.24290347450708	3.54127381664206	3.78169702389063	3.79659477119577	1.74977588083172	0.000777979532034211	0.0109850833387548
Merged-chr6-134671040-4	chr6	134670967	134671167	+	912.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170479, intron 2 of 3)	intron (NM_001170479, intron 2 of 3)	30127.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	3.99690420269882	3.57626886952254	3.95446345254081	3.75838747325331	3.74151894501274	3.5333293527675	3.84676620840334	3.54244936520789	-0.446757923615028	0.355929086514171	0.662610987347058
Merged-chr12-33045850-4	chr12	33045748	33045948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024478, intron 13 of 19)	intron (NM_001024478, intron 13 of 19)	47027.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	6.99605429673827	7.13197438291916	7.09074391615291	7.28607904156042	7.82866664189447	8.00623097854576	7.78368432083468	7.96528765583095	0.996573771285227	2.97139183446587e-08	1.43390304668099e-06
Merged-chr11-33163170-4	chr11	33163022	33163222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252261)	promoter-TSS (NM_001252261)	84.0	NM_001252261	18148.0	Mm.485384	NM_008722	ENSMUSG00000057113	Npm1	B23|NO38|Npm	nucleophosmin 1	protein-coding	7.77125053823266	8.01120930274497	7.33531183834445	7.32238990565565	7.68447841467421	7.7323063882454	7.95866601160756	7.58562438549302	0.140266041158355	0.522727840903137	0.78208877064842
Merged-chr7-19462084-2	chr7	19461984	19462184	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3590.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	3.59014627569838	3.70996428310755	3.85958814581906	4.26417526826275	3.83366451678117	3.7663650993104	3.6354365497429	3.80789234647367	-0.394825511545594	0.428088023369477	0.719151653480075
Merged-chr7-4080724-4	chr7	4080612	4080812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033568, intron 6 of 8)	intron (NR_033568, intron 6 of 8)	-17508.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	6.19765027489798	6.56448205178142	6.31584092901972	6.18473027942612	6.08799000457317	6.47341856883206	6.75632122952776	6.36598916264604	0.169679638228207	0.499803435182043	0.76850696952904
Merged-chr2-143834204-3	chr2	143834120	143834320	+	717.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291061, intron 5 of 7)	intron (NM_001291061, intron 5 of 7)	28953.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	3.19484565974505	2.97868845312356	3.141046606854	3.30809943528711	2.89422814334287	2.78493714999151	2.88887161313394	3.13932201594027	-0.9876220969847	0.108474540187236	0.363483160530424
Merged-chr11-23830479-4	chr11	23830385	23830585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-59515.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	5.46064129296484	5.69031005071377	5.59266206509195	5.23109479781737	5.60058972492891	5.21965563924887	5.25789701866139	5.24812931784373	-0.243976587703488	0.422077601765823	0.714426462857641
Merged-chr4-47057392-4	chr4	47057297	47057497	+	959.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356426)	promoter-TSS (NM_001356426)	-91.0	NM_001356426	75691.0	Mm.86866	NM_001024136	ENSMUSG00000066191	Anks6	2210417J20Rik|Ankrd14|Gm635|SamCystin|Samd6|b2b1801.1Clo	ankyrin repeat and sterile alpha motif domain containing 6	protein-coding	5.30856300431704	4.95870507352016	4.78907781460857	5.14524210254284	4.73696255664228	5.11451810715216	5.0824161719795	4.74522331669573	-0.283685403611966	0.401497016712925	0.699074269877918
Merged-chr7-96946719-2	chr7	96946620	96946820	+	678.333374	f0_balb.idr|f1_balb.idr	Intergenic	RLTR45|LTR|ERVK	-4807.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	3.9756542326752	4.11707201096926	4.05317026021658	3.39290253529663	3.45113199351063	3.47046236961954	3.34864889300693	3.420306420412	-1.62002659378934	0.00380280791574918	0.0385145225718712
Merged-chr13-3478161-4	chr13	3478071	3478271	+	963.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015522)	promoter-TSS (NR_015522)	-132.0	NR_015522	76937.0	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	4.84915364750632	4.86586210394409	5.15964176128493	4.89130076169994	4.96192812187867	4.90657422413441	5.27694587981522	5.29993085497366	0.344207943430812	0.284233608276148	0.596212390359036
Merged-chr3-59212558-4	chr3	59212503	59212703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	-1721.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	6.38879300435908	6.45882194391958	5.79606187482871	6.34969956087882	6.41031054205662	6.30375762382575	6.17640980083529	5.92026765197317	-0.0882068113545366	0.736424377176222	0.895993666633144
Merged-chr4-140975646-4	chr4	140975556	140975756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355515, intron 5 of 7)	intron (NM_001355515, intron 5 of 7)	-11217.0	NM_029097	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	7.58829531605574	7.59244168863427	7.72341645236203	7.8259841683067	7.52947899402381	7.3030811441511	7.87608354601487	7.63623593969124	-0.1163190183475	0.544381018030027	0.795184841840149
Merged-chr1-190826642-4	chr1	190826536	190826736	+	941.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178775, intron 8 of 14)	L1MDa|LINE|L1	85134.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	4.60620420093823	4.12430352715049	4.56664620798509	5.13758550984437	4.45642563409167	4.08068272368424	5.01375659067372	4.64294575106164	-0.170156087290777	0.716840528835675	0.886756899582804
Merged-chr14-47515786-3	chr14	47515686	47515886	+	728.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027414, intron 4 of 5)	L1MC5|LINE|L1	43225.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	3.86293366619466	3.31090182061124	3.76468841125785	3.58016515185217	3.74044944309603	3.83223296724735	3.89269980517893	3.95270605699211	0.640118262097803	0.182318458213086	0.47878218634963
Merged-chr6-129033621-4	chr6	129033520	129033720	+	720.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12281.0	NR_024263	232408.0	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding	3.52144375174135	3.52420609708224	3.41115428869105	3.44658022655856	3.53859116213348	3.33712370049577	3.78800997320033	3.22377926084778	0.0597927535495332	0.908853689904929	0.966100563913989
Merged-chr16-32866917-4	chr16	32866872	32867072	+	858.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172615, intron 1 of 18)	intron (NM_172615, intron 1 of 18)	1394.0	NM_001200038	100502698.0	Mm.327319	NM_172615	ENSMUSG00000035629	Rubcn	1700021K19Rik|5330403K09|Rubicon|mKIAA0226	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	protein-coding	3.65519783926751	3.37265519783929	3.80509294748092	3.67998372026743	3.76437733525597	3.66154663183936	3.64107202382927	3.70533496388097	0.181852638263316	0.703363938077081	0.880690314212345
Merged-chr13-12460632-4	chr13	12460555	12460755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291057, intron 1 of 8)	intron (NM_001291057, intron 1 of 8)	1083.0	NM_001291060	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	7.13805438916922	7.22885008031633	6.98239551585672	6.92575259232794	7.24050745329218	7.32705169026431	6.82626090118108	6.87023328588233	0.0256166486809836	0.904442644607331	0.964559678221358
Merged-chr15-84557776-4	chr15	84557664	84557864	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177630)	promoter-TSS (NM_177630)	59.0	NM_177630	223732.0	Mm.6471	NM_177630	ENSMUSG00000055745	Rtl6	BC058638|Ldoc1l|Mar6|Mart6	retrotransposon Gag like 6	protein-coding	5.27492392302757	5.36091464099712	4.90744187234279	4.88805882900357	5.02898598050517	5.26253211119317	5.27801080196094	5.11791136685316	0.105165684668476	0.743015480949363	0.898691548174051
Merged-chr17-34972673-2	chr17	34972560	34972760	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_013558)	promoter-TSS (NM_013558)	-43.0	NM_013558	15482.0	Mm.14287	NM_013558	ENSMUSG00000007033	Hspa1l	Hsc70t|Msh5	heat shock protein 1-like	protein-coding	6.5231710278319	6.58215562879479	6.01907302926547	6.02869018665997	6.5588081370382	6.66749236625914	6.58305079010105	6.41975899937199	0.375410823257693	0.127579425796098	0.397416890535686
Merged-chr10-51480567-4	chr10	51480463	51480663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291893)	promoter-TSS (NM_001291893)	-49.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	7.2577229183521	7.50455176548338	6.87161968083088	6.46284432383112	7.15435180811296	7.42521237818107	7.16961656000944	7.00101398946869	0.161934632752287	0.538973356642299	0.791900331925773
Merged-chr10-87890079-4	chr10	87889955	87890155	+	817.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111274, intron 2 of 4)	intron (NM_001111274, intron 2 of 4)	28944.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	3.94083265236068	3.74555716579709	4.03867889073818	4.31006661607426	3.90092194599308	4.06352858942932	3.82123223397331	4.21066926365639	-0.096985985180995	0.83251290490104	0.935885087069052
Merged-chr11-82779070-4	chr11	82778981	82779181	+	860.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_126067)	TTS (NR_126067)	1961.0	NR_126068	100503272.0	Mm.486964	NR_126067	ENSMUSG00000085175	Gm11423	-	predicted gene 11423	ncRNA	4.0159776692682	4.06892802021195	4.20358209772421	4.14620246337719	4.2494044700392	3.91881768217562	3.94924168237367	4.40114451187868	0.0999990312620731	0.812533838251114	0.927635088294457
Merged-chr13-23570566-4	chr13	23570436	23570636	+	787.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178196)	promoter-TSS (NM_178196)	684.0	NM_178187	319166.0	Mm.261665	NM_178187	ENSMUSG00000069272	Hist1h2ae	1190022L06	histone cluster 1, H2ae	protein-coding	2.77825955894306	2.51506447504123	2.84125051813571	2.94460381821159	2.72203956714224	2.88501619275116	2.88995284409529	2.89946982050976	0.281428239000288	0.666628111958624	0.862083217621463
Merged-chr7-75455518-4	chr7	75455418	75455618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029332)	promoter-TSS (NM_029332)	-16.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	7.96913868384091	8.31859685384221	8.05442033822229	8.67096609561324	8.28902822888023	7.92736010954221	8.49724529035737	8.39022440319197	0.00122453623594226	0.995459749306229	0.998334470328048
Merged-chr2-180225867-4	chr2	180225780	180225980	+	951.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081171)	promoter-TSS (NM_001081171)	-21.0	NM_001081171	16776.0	Mm.4339	NM_001081171	ENSMUSG00000015647	Lama5	AA408760|AA408762|AI853660|[a]5|laminin-511|mKIAA0533	laminin, alpha 5	protein-coding	4.35738200883026	4.55951266458529	4.60354354102788	4.35688409707251	4.36416082505304	3.93234338609353	4.58159095874213	4.77364391629443	-0.0459399848726781	0.911907877327664	0.967058605013842
Merged-chr12-17551473-3	chr12	17551411	17551611	+	813.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013614)	TTS (NM_013614)	6638.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	2.75354625071807	2.54159875866355	2.45383729274633	2.41107136996302	2.83953074830179	2.99547483282888	3.09274653298909	3.15571304187789	2.37664044445063	0.000367613765179683	0.00598773002098963
Merged-chr3-65975537-4	chr3	65975434	65975634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17285.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	6.89596432202743	6.97948555275013	6.60138051567472	6.74772308698085	6.82367492645889	7.12492979035709	6.99884235862428	6.7531225280587	0.162257036555898	0.437251789845725	0.725565803693411
Merged-chr16-36071602-4	chr16	36071493	36071693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027342)	promoter-TSS (NM_027342)	-67.0	NM_198645	381045.0	Mm.310434	NM_198645	ENSMUSG00000075229	Ccdc58	A930007B11Rik|AI413631	coiled-coil domain containing 58	protein-coding	7.17797764253716	6.98832499752665	6.90450021429047	7.20994591937031	7.32501955764655	7.26308666664598	7.35827252338231	7.12852687221217	0.256926930505891	0.177066722626584	0.472304000368656
Merged-chr15-8635613-4	chr15	8635529	8635729	+	993.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_148938, exon 10 of 10)	3' UTR (NM_148938, exon 10 of 10)	75178.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	5.03836022205558	5.47925801526617	5.03920722940576	4.50638576682667	5.61920895732748	5.64727765100629	5.68324374178901	5.07215910192057	0.859119174559845	0.0176824498372897	0.117749003364996
Merged-chr4-3664659-1	chr4	3664559	3664759	+	655.0	f0_balb.idr	Intergenic	Intergenic	8153.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	3.38965631762226	3.42738111042935	3.39015668360549	3.76904893572567	2.76407235444242	2.92176367364157	2.95527682867725	3.16191070944554	-2.41430218429147	0.000251084526234351	0.00437823260481011
Merged-chr13-98896919-4	chr13	98896803	98897003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 1 of 23)	intron (NM_178716, intron 1 of 23)	-5861.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	5.36094978837531	5.32703986425998	5.26569908471329	5.62502614317136	5.75078210401251	5.5973040579354	5.53354969578936	5.65889611983023	0.376091006547507	0.17906168909786	0.475150311970495
Merged-chr8-126705609-3	chr8	126705498	126705698	+	730.833313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112162.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	3.55124553574551	3.6881375889398	3.97875268865171	3.69032548011301	3.99868699670863	3.95537945692924	3.91536495403989	3.97628428914204	0.659431313901132	0.137900764963518	0.413063946022736
Merged-chr5-44227125-4	chr5	44227021	44227221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173764)	promoter-TSS (NM_173764)	-515.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	4.79662817165012	4.8023302818078	5.17689120319662	4.70363384076567	4.60170737585974	4.81619295159835	4.57722888149506	4.79422457624697	-0.363757495501112	0.298862010619953	0.611126405639852
Merged-chr10-126905782-4	chr10	126905700	126905900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4429.0	NM_001358970	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	7.43749072458465	7.62045205176575	7.57516668415564	7.39604951836146	7.42585847476601	7.49504288919448	7.23846476707446	7.33368629522785	-0.17133272507697	0.337823455425714	0.647614751784188
Merged-chr19-16140269-4	chr19	16140174	16140374	+	983.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	7443.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	5.3638233357552	5.68005856286517	5.39401438099861	5.08619052012741	5.50775164827441	5.53909774158483	5.36708177286825	5.16994947885407	0.0372428989077255	0.903478554841619	0.964287824952031
Merged-chr7-109463028-3	chr7	109462936	109463136	+	889.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170913, intron 10 of 19)	intron (NM_001170913, intron 10 of 19)	-23983.0	NM_054103	117229.0	Mm.389950	NM_054103	ENSMUSG00000031027	Stk33	4921505G21Rik|AW061264	serine/threonine kinase 33	protein-coding	3.8822046453994	3.36424702100773	3.64900467834806	3.57401797881305	3.36431127895472	3.47795625904042	3.82184105498612	3.48307634338612	-0.25630183258802	0.620869371083438	0.837513287123841
Merged-chr1-95314048-4	chr1	95313941	95314141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026321, exon 1 of 3)	exon (NM_026321, exon 1 of 3)	413.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	6.87003831758465	6.99718250371378	7.38539068993069	7.37242949085914	7.05780579866085	7.10556179931929	7.27994526566402	7.55844292011612	0.107517234898174	0.62975400897461	0.84238669232566
Merged-chr5-123257266-4	chr5	123257168	123257368	+	959.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29078.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	5.20027688168874	5.29771877273529	5.2011757177801	4.51720301551197	5.16143804847559	5.28138389962789	4.71476112964003	5.00389292303479	-0.034566427869467	0.925871438595131	0.972702408158768
Merged-chr8-80948602-4	chr8	80948488	80948688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66318.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	7.69446368502939	7.41609100262346	7.87014977998932	7.61546017938919	7.5776077385118	7.68948086305176	7.9073953441105	7.44902193073066	0.0132893034477665	0.945121333076163	0.980309969792321
Merged-chr4-33028410-1	chr4	33028310	33028510	+	550.0	f0_balb.idr	non-coding (NR_036602, exon 2 of 2)	non-coding (NR_036602, exon 2 of 2)	2913.0	NR_036602	100504166.0	Mm.426309	NR_036602	ENSMUSG00000085037	4933421O10Rik	-	RIKEN cDNA 4933421O10 gene	ncRNA	2.63615620372302	2.63000513950778	2.95270094538186	2.78184553058565	2.75160885468585	2.9430578841352	2.82501984596778	2.89376431568332	0.436346289804695	0.48750623628982	0.76083595844749
Merged-chr17-84185141-3	chr17	84185085	84185285	+	760.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001001806, exon 2 of 2)	3' UTR (NM_001001806, exon 2 of 2)	2762.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	2.95999771021545	3.07317616943199	2.96041298120247	2.75339914129266	2.60461791090805	2.59463199716031	2.63503902326342	2.90114198597804	-1.20900649984448	0.0733572987592022	0.291717222358011
Merged-chr8-90861716-3	chr8	90861607	90861807	+	732.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	32872.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	4.17650863865907	4.11060430863986	4.08992273327734	4.21159373459586	3.90568301254648	4.01672260828532	3.59070980985017	3.99386150775198	-0.721518147752153	0.099628012838376	0.346218223703981
Merged-chr1-128590975-4	chr1	128590938	128591138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356509, intron 1 of 1)	CpG	1261.0	NM_009911	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	6.84021889534816	6.76051170930044	7.19655435386857	7.00585479300277	6.23844274463159	6.33392406886074	6.38722652547631	6.69651441659338	-0.777913096879631	0.000577359115918622	0.00866452551380384
Merged-chr16-38239945-4	chr16	38239840	38240040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 11 of 11)	intron (NM_001347232, intron 11 of 11)	54884.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	5.8796539069562	5.93425603904493	5.94985351472673	6.48764788459001	5.87976114815629	6.00888100521829	5.7272351914744	5.98966709487827	-0.327983735267268	0.233669127597814	0.543405144503642
Merged-chr15-65106113-3	chr15	65106029	65106229	+	685.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-183833.0	NM_009623	11514.0	Mm.1425	NM_009623	ENSMUSG00000022376	Adcy8	AC8|AW060868	adenylate cyclase 8	protein-coding	3.65137479778317	3.28205409494665	3.56287723754879	3.60999756232697	2.96250394029374	3.02599608947408	2.83186197369773	3.12413809444559	-2.26835837332768	0.000340223067588132	0.00562772058151999
Merged-chr15-25358740-4	chr15	25358641	25358841	+	914.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55023.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	4.38178261073963	4.07356332243372	4.28895917956448	4.38430793762153	4.96614913837348	4.51274005207182	4.74545159788063	4.50826379979013	0.92566557115017	0.0152350418326148	0.1060345206418
Merged-chr7-62464499-4	chr7	62464398	62464598	+	900.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013788)	promoter-TSS (NM_013788)	12.0	NM_013788	27412.0	Mm.422745	NM_013788	ENSMUSG00000070526	Peg12	Frat3	paternally expressed 12	protein-coding	6.5725275849956	6.54772132341414	7.00375282261621	6.78650421085402	4.84147475460595	5.07465168649958	5.23842005013958	5.05786117311107	-2.81307386857737	5.36884181364351e-23	2.65381105175924e-20
Merged-chr8-37063977-4	chr8	37063884	37064084	+	866.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39746.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	4.29315002029741	3.99372414370945	4.24964077920118	4.42442965954843	4.41150906932167	4.0121733293507	4.18569053547965	4.52754173145448	0.111484239704784	0.789242586498313	0.918354557737069
Merged-chr15-58687950-4	chr15	58687866	58688066	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135461.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	5.24628053531575	4.86329248040629	5.2758906383977	5.06256825247528	5.20508794432305	5.19956550630836	4.89391284258138	4.91394162767956	-0.0900244779084238	0.778655692117912	0.913781420202775
Merged-chr9-90226043-1	chr9	90225943	90226143	+	625.0	f0_c57.idr	exon (NM_194334, exon 6 of 13)	exon (NM_194334, exon 6 of 13)	44726.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	3.47281513691496	3.39809606300423	3.35892223071162	3.60175951539442	3.51606600929892	3.53051672884746	3.34725695592058	3.62537048929755	0.123565125027071	0.806208049889222	0.925372909021511
Merged-chr7-100960847-4	chr7	100960665	100960865	+	925.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	3601.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	3.67121949490481	3.85968494378626	3.56217164791865	3.74118688164044	3.70282796177416	3.55674098310801	3.75676152050379	3.61615860081649	-0.166200387969595	0.723485436124487	0.889624450832197
Merged-chr12-82234858-3	chr12	82234787	82234987	+	748.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	MLTR14|LTR|ERV1	64871.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	3.27162072601152	3.33462487902052	3.21528222890431	3.27790195285585	2.97704046022498	3.20364798384794	3.08344958875423	3.32453541607332	-0.497640704264884	0.370590477456961	0.674834554323746
Merged-chr19-32292139-3	chr19	32292014	32292214	+	857.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	57202.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	3.68875655248659	3.5876018434915	3.58755324098242	3.63170604411393	3.32495028840319	3.59218170734242	3.51980463500654	3.58554140892943	-0.401037763836933	0.411994415783025	0.70726552639751
Merged-chr4-134918610-4	chr4	134918526	134918726	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-3710.0	NM_027935	71817.0	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	4.94788950324144	4.58037959381694	5.61556494057796	5.69498529336867	5.08252734600368	4.63796202895822	5.10096860131029	5.54220282602076	-0.304636841330093	0.471302990184418	0.749784889775528
Merged-chr11-51815456-3	chr11	51815377	51815577	+	621.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199299, exon 12 of 12)	3' UTR (NM_199299, exon 12 of 12)	42004.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	3.3110999293707	3.09245079670131	3.13367358953849	3.22751723229256	3.36634008823474	3.36688006282397	3.29867673306934	3.3097451959972	0.518195008114446	0.324495493870081	0.636100359119347
Merged-chr17-23742638-3	chr17	23742532	23742732	+	849.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028416, exon 7 of 10)	exon (NM_028416, exon 7 of 10)	-2302.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	2.98395495640842	2.64186377909442	2.98433314971845	2.58796744453237	3.30794018255729	3.21861564828961	3.14763691592895	3.04426909077559	1.66177276285719	0.00785976131701132	0.0663877952751333
Merged-chr5-114379410-4	chr5	114379328	114379528	+	719.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159941, intron 1 of 6)	intron (NM_001159941, intron 1 of 6)	1077.0	NM_001159941	330171.0	Mm.238285	NM_026145	ENSMUSG00000001098	Kctd10	AW536343|C87062|mBACURD3	potassium channel tetramerisation domain containing 10	protein-coding	3.35813997024808	3.29344291545609	3.29931049509395	3.43946112046347	3.40656307973328	3.21428525962602	3.45555319336656	3.7511770307888	0.39813626162644	0.450146456997578	0.735171389363527
Merged-chr15-100599021-4	chr15	100598913	100599113	+	912.712524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304965, intron 1 of 10)	intron (NM_001304965, intron 1 of 10)	971.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	4.47926487736977	4.42236232720901	4.31118415639282	3.98421710874309	4.48746039065428	4.24332056981358	4.45905384124535	4.51591890234737	0.327631713273949	0.410717332198609	0.706124327376495
Merged-chr9-106330366-4	chr9	106330265	106330465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 10 of 10)	MTC|LTR|ERVL-MaLR	-38267.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	5.57935127725501	5.78599644999026	5.33813234362418	5.17613686467863	5.93676366335293	6.02606237736199	5.75431418226946	5.87032072566512	0.705884167422224	0.0123543021159962	0.0916580019089525
Merged-chr13-10686525-1	chr13	10686425	10686625	+	731.0	f0_c57.idr	Intergenic	RMER16|LTR|ERVK	-325722.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	3.532550952726	3.57665339826296	3.53298031839246	3.80416817150968	3.96649552822766	3.94348389403491	3.75259624847301	4.4854967332657	1.21898337938855	0.0144277569154982	0.102021985842266
Merged-chr15-27718855-4	chr15	27718726	27718926	+	844.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A|LTR|ERVK	-37284.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	3.82777361715209	3.80255822184155	3.49796023765985	3.93240261898982	3.67184750112278	3.73443427322578	3.76326787888219	3.87366079721339	-0.0784831189967848	0.867202097901131	0.950297561796699
Merged-chr9-113663666-4	chr9	113663556	113663756	+	908.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164678, intron 12 of 17)	B4A|SINE|B4	44603.0	NM_001164678	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	4.13731365230312	4.12084306444776	4.55244913396058	4.86809906279023	4.40946101988929	4.55868035537423	4.60688511201097	4.62582396201461	0.155442301274455	0.713612166910466	0.885457948749053
Merged-chr15-61157692-4	chr15	61157582	61157782	+	801.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-236412.0	NM_001081067	117586.0	Mm.291499	NM_001081067	ENSMUSG00000022347	A1bg	C44	alpha-1-B glycoprotein	protein-coding	3.42443638486705	3.60837598262846	3.70437536528786	3.59564619909456	3.87487334316317	3.71536532391438	3.53032273718041	3.79896281708821	0.476761906490335	0.315629394819957	0.627488794659175
Merged-chr18-53177354-4	chr18	53177238	53177438	+	966.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357463, intron 1 of 15)	intron (NM_001357463, intron 1 of 15)	1046.0	NM_026386	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	5.09354693324261	4.56981113810028	4.6487679790578	5.27512671001938	4.89658882724664	5.20239300084052	5.09996245123332	4.88753848847486	0.145071674901227	0.691577222122179	0.874549631236956
Merged-chr7-4777394-3	chr7	4777307	4777507	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290423, intron 1 of 4)	intron (NM_001290423, intron 1 of 4)	734.0	NM_008350	16156.0	Mm.35814	NM_008350	ENSMUSG00000004371	Il11	IL-11	interleukin 11	protein-coding	3.15833915763753	3.09243654725494	3.15876859621721	3.05899679741683	2.94577314172476	3.08860515908625	2.90588878997313	3.10029727796644	-0.433284675764846	0.44945969669367	0.734617277148016
Merged-chr11-114934429-4	chr11	114934326	114934526	+	922.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199221)	promoter-TSS (NM_199221)	-40.0	NM_199221	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	5.23242350975312	5.02248657965718	5.2333165268161	5.42685773878541	5.09436451311864	5.17669449473233	5.14582535675757	5.06834983937723	-0.243902402253122	0.421449141842901	0.714001052191097
Merged-chr11-6497400-1	chr11	6497300	6497500	+	791.0	f1_c57bl6.idr	Intergenic	Intergenic	-21324.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	1.71123808455814	1.67963979388422	1.71135526450066	1.52289808574846	2.01020506646337	2.40084572912537	2.08992449185857	2.16387157584434	6.13116628185013	5.17840736444775e-08	2.35975581174153e-06
Merged-chr4-15289124-4	chr4	15289025	15289225	+	820.391663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23305.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	3.70049861962652	4.25599256244233	3.92441642503474	3.58100173148079	4.25098755291328	4.32848292175269	4.09659889932272	3.69905539591692	0.609263083081789	0.2114604781582	0.51607702584897
Merged-chr10-117710198-4	chr10	117710101	117710301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010786, intron 1 of 11)	CpG-1528	557.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	6.90156996857892	6.55350329938967	6.87691933224202	6.76094133929259	6.76209503795244	6.77727238031972	6.51708612948679	6.89788927804883	-0.0424886520005383	0.840315384909584	0.939246943014465
Merged-chr15-97415682-4	chr15	97415564	97415764	+	986.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168377.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	5.77707419515724	5.17431831429512	5.58913770169643	5.98083468999653	5.19279390091154	4.94709613625284	5.56072745197888	5.45090012021839	-0.63646103215252	0.0559309778983492	0.247535352597562
Merged-chr11-80508664-4	chr11	80508538	80508738	+	837.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126552, exon 1 of 3)	non-coding (NR_126552, exon 1 of 3)	468.0	NR_126552	77417.0	Mm.437510	NR_126552	ENSMUSG00000085078	C030013C21Rik	-	RIKEN cDNA C030013C21 gene	ncRNA	3.93145587268217	3.92347374942651	3.68230245721122	3.5722317164054	3.95542669160817	3.80070493818072	3.72128694745566	3.62409690317982	0.0324336005550689	0.945260740386421	0.980411707344997
Merged-chr7-127355975-3	chr7	127355868	127356068	+	596.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-10654.0	NM_146202	233890.0	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	3.16115518230403	3.25247684956614	3.32971728321422	3.27572256861567	3.2772762294706	3.07506806583749	3.20832594310145	3.15999944541908	-0.267770749690856	0.62207525335418	0.838167154889399
Merged-chr4-145215125-2	chr4	145215025	145215225	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011610, exon 10 of 10)	3' UTR (NM_011610, exon 10 of 10)	-20120.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	3.31788061991333	2.86814013143148	3.20541274606568	3.10879265163347	3.03805793563497	3.31865630918123	3.35691867763257	3.36929243332254	0.53391891988491	0.351100923690681	0.658611481021979
Merged-chr4-44072675-4	chr4	44072562	44072762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190414)	promoter-TSS (NM_001190414)	55.0	NM_001357539	50798.0	Mm.256718	NM_015828	ENSMUSG00000028479	Gne	2310066H07Rik|DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding	7.52682422100629	7.27290317208597	7.12043648284972	7.34090527678088	7.40747647824957	7.39033962817678	7.21018715458023	7.07880117585802	-0.0560511833697909	0.77230126013482	0.910835110021645
Merged-chr15-58554232-4	chr15	58554180	58554380	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138812.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	4.79110618008537	4.97608451774351	4.58131752609029	5.21567906967831	4.91058678969833	4.92777930668221	5.04525060933972	4.86414652803568	0.00250068966619089	0.994266225451691	0.997911358894315
Merged-chr9-50533523-4	chr9	50533419	50533619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133217, exon 12 of 12)	exon (NM_133217, exon 12 of 12)	-4878.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	5.42289633344435	5.61647099491191	5.26381420427091	5.71853586968322	5.75749402928751	5.50767867129519	5.61578929313489	5.78343233400688	0.234614902171091	0.402110865440188	0.699663862598199
Merged-chr15-50698669-1	chr15	50698569	50698769	+	1000.0	f0_balb.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	190380.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	4.29110432611082	4.3827710716931	3.95480858116811	4.3094159499459	4.18122693965539	4.61795645303568	3.93909211400123	3.83836127432451	-0.172905366306274	0.703185187608516	0.880654851214684
Merged-chr12-73681389-4	chr12	73681278	73681478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	96582.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	6.65464774829618	7.12759380582826	6.75891114913485	6.86654420334806	6.72203320512644	6.21629719824408	6.31158542578114	6.79578260639694	-0.461716954770332	0.0557334821833678	0.247106859868565
Merged-chr7-19338231-4	chr7	19338117	19338317	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6854.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	5.11851672170057	5.28872398427578	5.22436476722581	5.04841150146892	5.6419266550169	5.43498538300376	5.83925963552061	5.82437803338512	0.93061436322398	0.000920555598904338	0.0126032365790367
Merged-chr4-150862858-4	chr4	150862771	150862971	+	817.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133753, intron 1 of 3)	intron (NM_133753, intron 1 of 3)	7801.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	3.88716834745042	4.21423693601703	3.7825734290136	3.83030384157956	4.06823786186688	3.84561236145798	3.82083380122479	3.93492798431269	-0.0280049700636393	0.950196201591934	0.982218805887075
Merged-chr9-63720851-2	chr9	63720751	63720951	+	543.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	37143.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	2.79030908406101	2.82342337766695	2.67161328499756	2.46741844055828	2.35724804463433	2.41924217681918	2.59873530577121	2.67022775832752	-0.939455209458036	0.193546659753498	0.493731393226286
Merged-chr1-180303816-4	chr1	180303701	180303901	+	941.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26675.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	4.87293469448821	5.37125836970296	5.07567829809893	4.31190165513913	5.91802888087082	6.29387778940537	5.83512867239645	5.10909893101238	1.5564537714622	7.49851966159936e-05	0.00158972317475975
Merged-chr8-70572677-2	chr8	70572578	70572778	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	-21803.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	3.04166597691121	3.04452619765564	3.10093486868159	3.4960079750358	2.98088897868597	2.95302487184806	2.90677978483644	2.97895113481025	-1.01358404845219	0.0997651107108196	0.346500478934587
Merged-chr7-19458860-4	chr7	19458758	19458958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172279)	promoter-TSS (NM_172279)	-364.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	6.59501797521469	6.29748465423933	6.2652514446925	6.23881396097109	6.22255509899948	6.49611171954841	6.09387743670309	6.01042656132484	-0.200291429923038	0.405916479895207	0.702456276834042
Merged-chr19-3328131-2	chr19	3328031	3328231	+	743.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 1 of 18)	intron (NM_013495, intron 1 of 18)	4830.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	2.64071946639282	2.55363464228204	2.641049446149	2.56325790442916	2.6361563867982	2.47328544857479	2.43919515776162	2.57792232030196	-0.315885737375198	0.64054439042545	0.848234068144109
Merged-chr17-35202069-4	chr17	35201978	35202178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278601)	promoter-TSS (NM_001278601)	-71.0	NM_001278601	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	7.09203668554105	7.91755842494743	6.68475797501307	6.51711451991295	7.33066720716782	7.66896399675379	7.14984068851626	6.86511725666412	0.142465734044509	0.767582325868371	0.909027746453384
Merged-chr5-125273867-4	chr5	125273718	125273918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	67276.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	6.83728169919332	6.7148033812888	6.35671931547704	6.35481520488025	6.01121012915072	6.6042491350384	6.39513302921234	6.19618541023027	-0.392971125386315	0.122636942867063	0.388118578824182
Merged-chr13-46168926-4	chr13	46168826	46169026	+	870.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104795.0	NM_001005422	380842.0	Mm.188108	NM_001005422	ENSMUSG00000063529	Stmnd1	Gm1574	stathmin domain containing 1	protein-coding	4.50347227544449	4.94608287697223	4.45989434832112	4.19105032717937	4.65922340438404	4.68005322468177	4.52609101906057	4.96920720683081	0.370639812597076	0.347816882943669	0.655682449045167
Merged-chr2-11603228-4	chr2	11603112	11603312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152824)	promoter-TSS (NM_152824)	-13.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	7.26313122044928	7.22562401546856	7.43684697605617	7.3538285281562	7.4445815038933	7.21640015887638	7.49106017583868	7.45050099235132	0.114093412430243	0.524680563525224	0.783071329178099
Merged-chr7-141165033-4	chr7	141164919	141165119	+	973.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172100, intron 2 of 9)	intron (NM_001172100, intron 2 of 9)	3667.0	NM_001172101	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	5.23951995635762	5.41594902168227	5.17920743211966	5.44252570972749	4.97052154382881	5.28931718957495	4.36558467930118	5.11137277663823	-0.669764442650177	0.0589229637764536	0.25561175272088
Merged-chr1-93305906-4	chr1	93305804	93306004	+	908.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178051)	promoter-TSS (NM_178051)	-25.0	NM_178051	69821.0	Mm.52809	NM_178051	ENSMUSG00000026273	Mterf4	1810059A23Rik|4933412H03Rik|Mterfd2	mitochondrial transcription termination factor 4	protein-coding	4.66152878836194	4.50018854378743	4.66227097009332	4.89667308122918	4.86390687486292	4.7957431703015	4.82569323762867	4.77439596021892	0.232829857458108	0.497715792171491	0.767160446248674
Merged-chr1-166921164-4	chr1	166921052	166921252	+	978.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78578.0	NR_037988	100503962.0	Mm.216842	NR_037988	ENSMUSG00000102548	Gm16701	-	predicted gene, 16701	ncRNA	3.71788687497782	4.20367986938542	4.51357376516167	4.83372284077254	4.9473496686521	4.3783605452449	4.70922888311508	4.03543222407334	0.424886155051647	0.5998614109033	0.826616767892885
Merged-chr15-84256472-4	chr15	84256389	84256589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	24446.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	5.92877493736256	6.19156630547766	6.37149589059414	6.62615014393723	5.97549927468144	6.08345214585601	6.17725184237062	6.040297185207	-0.391355364300974	0.130061504142818	0.401487875155012
Merged-chr15-75791334-3	chr15	75791228	75791428	+	852.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172121, intron 4 of 11)	intron (NM_172121, intron 4 of 11)	-43406.0	NM_194350	378435.0	Mm.309589	NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding	3.97136189360696	3.90559287579206	4.75299719424101	4.41519571982145	4.05566439588572	3.74292960858318	3.60915890761597	3.96959745728659	-1.16985942332945	0.0205270407535537	0.130237695934148
Merged-chr5-117313602-4	chr5	117313506	117313706	+	766.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5660.0	NM_001033311	231668.0	Mm.298603	NM_001033311	ENSMUSG00000066894	Vsig10	-	V-set and immunoglobulin domain containing 10	protein-coding	3.97938517631755	3.95593899757508	3.92858054111741	4.17956890464114	4.08484965038492	4.33547341786264	4.05935408080188	3.97765513027741	0.235410638256538	0.57787102533219	0.814381921099761
Merged-chr7-15974896-4	chr7	15974802	15975002	+	827.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081418, intron 13 of 13)	intron (NM_001081418, intron 13 of 13)	-7367.0	NM_153068	259300.0	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	3.50962258569441	4.33078629312978	3.69528342328426	3.77930794438878	4.04278275263457	3.97951746405927	3.8913283911609	3.80380083867028	0.17992345797767	0.716643217132302	0.886676884514573
Merged-chr14-100937622-4	chr14	100937507	100937707	+	869.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	262462.0	NM_029680	76627.0	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding	4.61373945237013	4.30707664236881	4.54006064597021	4.39184034299807	4.0641491789579	4.31673146267136	4.26752240105728	4.6815603455519	-0.276214811776552	0.491453708647465	0.76303159620063
Merged-chr8-78630688-5	chr8	78630594	78630794	+	963.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009981, intron 5 of 10)	intron (NM_001009981, intron 5 of 10)	121366.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	3.54398779093582	3.16586002777027	3.49449669512425	3.58363728483226	3.19205803242402	3.255732673349	3.47991109407445	3.20853413777933	-0.621232529817847	0.255773998319707	0.567386711951831
Merged-chr8-105297669-4	chr8	105297623	105297823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148952)	promoter-TSS (NM_148952)	60.0	NM_148952	104394.0	Mm.34554	NM_148952	ENSMUSG00000014859	E2f4	2010111M04Rik|AI427446	E2F transcription factor 4	protein-coding	6.89400507512655	7.02227345993136	7.04408287339737	6.78473523572229	6.8219543107418	6.77706235857124	6.79289418889031	6.73642360578077	-0.206705594209626	0.293824130213684	0.606204004660023
Merged-chr6-71200743-4	chr6	71200650	71200850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017399, intron 1 of 3)	intron (NM_017399, intron 1 of 3)	871.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	5.9067363358068	5.64930593270532	6.2591335901942	5.54026624789818	6.00595081493	6.06017032765111	5.92159128783199	5.65566524113481	0.111295521834851	0.698278964977088	0.878303994693932
Merged-chr4-58304082-3	chr4	58303972	58304172	+	960.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037130, intron 5 of 12)	intron (NM_001037130, intron 5 of 12)	18110.0	NM_010944	18198.0	Mm.16148	NM_010944	ENSMUSG00000057280	Musk	Mdk4|Mlk|Nsk1|Nsk2|Nsk3	muscle, skeletal, receptor tyrosine kinase	protein-coding	4.10987589829604	3.88530566926271	4.43945853405546	4.63510104591453	3.12371779426963	3.3866254505688	3.2544676172595	3.26308804123646	-3.90615237387271	9.6626624449078e-09	5.14034865594987e-07
Merged-chr4-138250214-3	chr4	138250151	138250351	+	875.81665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099631)	promoter-TSS (NM_001099631)	-160.0	NM_001099631	230863.0	Mm.482408	NM_001099631	ENSMUSG00000045349	Sh2d5	BC036961	SH2 domain containing 5	protein-coding	3.93484155295662	3.483455709949	3.45869713297727	3.61637027766086	3.52731738271118	3.45124685434743	3.38749980777438	3.45689825979358	-0.575421373207502	0.260127190705424	0.571901621080305
Merged-chr17-25837223-3	chr17	25837108	25837308	+	788.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144816)	promoter-TSS (NM_144816)	-81.0	NM_144816	214951.0	Mm.490018	NM_144816	ENSMUSG00000025735	Rhbdl1	Rhbdl	rhomboid like 1	protein-coding	3.28273983228723	3.32556606768424	3.50597032095181	3.30187733010875	3.30108826715973	3.39599012067644	3.33010244526938	3.6020570938341	0.19876968225867	0.699966892492562	0.878998552556505
Merged-chr4-96591662-3	chr4	96591482	96591682	+	863.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028979)	promoter-TSS (NM_028979)	-97.0	NM_028979	74519.0	Mm.458387	NM_028979	ENSMUSG00000015224	Cyp2j9	8430417E17Rik	cytochrome P450, family 2, subfamily j, polypeptide 9	protein-coding	3.11861219284803	3.28534957292407	3.28555458781592	3.64282640824476	2.6197172909681	2.8925425858365	2.77709340905207	3.05684960904111	-2.36043747744533	0.000830662139977712	0.0115955482371982
Merged-chr2-117962138-4	chr2	117962035	117962235	+	973.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	140207.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	5.7273155701798	5.43479105595168	6.00687329290094	6.01202599637301	5.26548716876968	4.97034170505405	5.74585120979272	5.700026766853	-0.61354135112274	0.0590293984012121	0.255901915390698
Merged-chr1-36569558-4	chr1	36569487	36569687	+	892.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-11206.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	4.46145233620246	4.40552413035959	4.38091597714464	4.22619690062222	4.26215412279508	4.42169912146915	4.31882351324539	4.19854270143046	-0.146733335668538	0.700813640771615	0.879374176246616
Merged-chr11-106739897-2	chr11	106739797	106739997	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-11329.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	3.32524944020244	3.43006859666795	2.93342062821722	2.88040879187078	3.48777457785904	3.49730727723806	3.31250468683515	3.37922055861871	0.957887640380806	0.0989340964622602	0.344824222368548
Merged-chr4-114982757-4	chr4	114982654	114982854	+	712.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025647, intron 1 of 5)	B3|SINE|B2	4474.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	4.44109735765361	3.88538257387208	4.03796295280547	4.05601488206694	4.49125176875805	4.16306022012068	4.49464853067237	4.31806218842722	0.648729548509188	0.115178293760387	0.375505100872834
Merged-chr13-67637782-4	chr13	67637683	67637883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183146)	promoter-TSS (NM_183146)	-30.0	NM_183146	212281.0	Mm.342918	NM_183146	ENSMUSG00000021510	Zfp729a	A530054K11Rik|Rslcan3	zinc finger protein 729a	protein-coding	7.0827632861601	7.35119183290867	7.30504150598218	6.96277970953901	7.18337123556579	7.29664766070407	7.28862101140248	6.8255350605384	-0.0210722676945117	0.920030239648613	0.970406583631903
Merged-chr13-44660006-4	chr13	44659918	44660118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70756.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	7.74680422694464	8.03913388722239	7.57287358180651	7.39349368117459	7.57839100936167	7.77680977418452	7.46207364398593	7.5405159209828	-0.147166054224933	0.473735018033981	0.751353302182328
Merged-chr7-16052958-4	chr7	16052878	16053078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-18867.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	7.42620187415733	7.2821861733183	6.97149150226398	7.2997608265206	7.66414832574705	7.52564769842429	7.53442267068239	7.18074366826714	0.314823378777477	0.117241429059783	0.378687102556896
Merged-chr11-115676933-4	chr11	115676824	115677024	+	935.0125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	22610.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	5.00568669308885	4.65783951766362	4.41989580579904	4.85069112391121	5.01184564470983	4.93862987995877	4.66564834298485	4.79971181956157	0.221449864927519	0.531200959605608	0.787095803840917
Merged-chr10-95322365-4	chr10	95322268	95322468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	1341.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	6.79745104827754	6.82885594058302	6.64930347449557	7.07402616806995	6.99329181637218	6.7108854698357	6.93423191650065	6.49324234745856	-0.0761105635686823	0.734489871527542	0.895056575337424
Merged-chr17-46773969-2	chr17	46773869	46774069	+	722.6999509999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025966)	TTS (NM_025966)	1334.0	NM_025966	67101.0	Mm.358702	NM_025966	ENSMUSG00000062619	2310039H08Rik	-	RIKEN cDNA 2310039H08 gene	protein-coding	2.95738452468895	3.10895588624162	3.22467825953838	2.7618856755171	3.2548452245676	3.75898883599931	3.32662503136148	3.39303015411713	1.62407721882491	0.00536111491965532	0.0500326208032183
Merged-chr5-145083810-4	chr5	145083718	145083918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019767)	promoter-TSS (NM_019767)	-51.0	NM_019767	56443.0	Mm.371610	NM_019767	ENSMUSG00000029621	Arpc1a	0610010H08Rik|1110030K07Rik|41kDa|AA407347|Sid32|Sid329	actin related protein 2/3 complex, subunit 1A	protein-coding	7.12269399635793	7.20227790084189	6.69553388835318	7.08619715401524	6.59565945667536	7.03178068925314	6.58193416625231	6.56058754853296	-0.481835658836526	0.0322486871020182	0.175746826371224
Merged-chr5-64070308-2	chr5	64070208	64070408	+	824.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22631.0	NM_025700	66681.0	Mm.2325	NM_025700	ENSMUSG00000029171	Pgm1	3230402E02Rik|Pgm-1|Pgm2	phosphoglucomutase 1	protein-coding	2.87347169695866	3.0216295245466	3.18483852278314	3.10016710038099	3.24726150041766	3.11544120527551	3.17240554422394	3.06765186268666	0.406348612645293	0.473531376904537	0.751231191670671
Merged-chr19-21495955-2	chr19	21495858	21496058	+	892.25	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23297.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	4.01151635554415	3.8514831141115	5.08299114426991	4.30091461447403	3.70998654637493	3.71050126989482	4.27385116864677	4.00969026913028	-1.13119682477002	0.0360672604848399	0.188763972240393
Merged-chr3-88237617-2	chr3	88237517	88237717	+	874.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17067.0	NM_021375	58176.0	Mm.103777	NM_021375	ENSMUSG00000104445	Rhbg	-	Rhesus blood group-associated B glycoprotein	protein-coding	2.50822739325763	2.5497522080578	2.43718326776933	2.24640635418822	2.66957262111102	2.81079701681525	2.63075891741049	2.63927154343249	1.3913790525331	0.0430691276894983	0.211150178747783
Merged-chr5-43770762-4	chr5	43770689	43770889	+	994.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159963, exon 3 of 11)	exon (NM_001159963, exon 3 of 11)	11360.0	NM_001159963	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	5.42022422854393	4.79721949891194	6.0689253144833	6.00676888642907	5.34837586002371	5.24459004942206	5.08169779111686	5.10205688907656	-0.852227800824037	0.0285097896683387	0.16200689117058
Merged-chr11-101665524-4	chr11	101665420	101665620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025404)	promoter-TSS (NM_025404)	-21.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	6.41185542326937	6.66569647225658	6.15403034157859	6.45125537876823	6.66363040823837	6.7093400886745	6.44992177285762	6.87018433691699	0.35110177369488	0.122520486270361	0.387939754992795
Merged-chr7-126780134-4	chr7	126780074	126780274	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026875, exon 5 of 5)	3' UTR (NM_026875, exon 5 of 5)	-1309.0	NM_011538	21389.0	Mm.727	NM_011538	ENSMUSG00000030699	Tbx6	rv	T-box 6	protein-coding	5.3208495616815	5.50292366823977	5.0295975427082	5.06234548867899	5.59232390494426	5.13283658608297	5.17453928846009	5.06214186277156	0.0641871257955827	0.84403087469294	0.94088019607581
Merged-chr11-95834940-3	chr11	95834830	95835030	+	993.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025659, intron 3 of 7)	intron (NM_025659, intron 3 of 7)	-7365.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	4.21854726414494	4.73525345687981	4.4086184594929	3.811934570868	4.76574575882253	4.78389428046315	4.2504867901024	4.64616187262065	0.673146148505806	0.127306608888545	0.396984014460603
Merged-chr9-100455251-3	chr9	100455108	100455308	+	717.8555299999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31265.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	3.55796463880621	3.46055682015886	3.55849441935225	3.53258055794715	3.09437157146523	3.19990935127848	3.21243312715395	3.45417959188965	-1.04187776274708	0.0529933236756507	0.240108920508768
Merged-chr2-93941877-4	chr2	93941787	93941987	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15213.0	NM_001145034	620695.0	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2	predicted gene 13889	protein-coding	5.48512447634324	5.49670033571339	5.64800297388202	6.02943948465937	5.47178333820348	5.18741537456656	5.71619366893461	5.71772154822634	-0.274875524910001	0.368148263064262	0.672615447435795
Merged-chr11-20176228-3	chr11	20176118	20176318	+	859.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25194.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	3.75565932119453	3.74127715086127	3.59467558339846	3.84180004016306	3.62235191817157	3.76814371308332	3.92617182405922	3.59280866658396	-0.0410454719964446	0.930071509385539	0.974727857709636
Merged-chr3-31435763-3	chr3	31435667	31435867	+	944.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125448.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	4.49108733749967	4.10188478648967	4.80678040747256	4.70385800898597	4.0814040852167	3.89180620809082	4.65360130190347	4.31913515993314	-0.670142428356477	0.138370798764292	0.413827524590065
Merged-chr2-126164799-4	chr2	126164697	126164897	+	996.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026981, exon 5 of 5)	exon (NM_026981, exon 5 of 5)	12656.0	NM_026981	69185.0	Mm.29019	NM_026981	ENSMUSG00000023330	Dtwd1	1810033A06Rik	DTW domain containing 1	protein-coding	5.3223146931846	4.83077547259323	5.26104346266095	5.74933369259667	5.62564882188682	5.33877435495643	5.49167984042678	5.28885565364719	0.166980722448174	0.623643657292864	0.839057402560226
Merged-chr4-135267145-4	chr4	135267043	135267243	+	983.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	5617.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	4.78499915128112	5.21387402949455	5.04647211804828	5.06335748886532	4.86772046637265	5.18609484067218	5.11842196512063	5.17100158938442	0.0791868472134508	0.803442029760503	0.924122552203287
Merged-chr6-65614440-4	chr6	65614321	65614521	+	941.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001495, intron 6 of 7)	MTD|LTR|ERVL-MaLR	24023.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	4.52785354419985	4.48101990540777	4.68513347506351	4.8967654215144	4.69557988390647	4.27071459273298	4.62598921519343	4.48340871783156	-0.295811050011487	0.433919588186561	0.723273830118053
Merged-chr8-36952396-7	chr8	36952267	36952467	+	911.214294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001194940)	promoter-TSS (NM_001194940)	75.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	4.74216547996604	4.56342423596589	4.81102518093646	4.88633203928224	4.44697611233152	4.30894992753074	4.10974765626669	4.59161547195416	-0.855114078033969	0.0239602973169299	0.14432343257356
Merged-chr12-79029141-4	chr12	79029043	79029243	+	915.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181073)	promoter-TSS (NM_181073)	-20.0	NM_181073	211945.0	Mm.478321	NM_181073	ENSMUSG00000060716	Plekhh1	AV308913|C77772|D630024D12Rik|mKIAA1200	pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	protein-coding	4.53420258820182	4.97139644077087	4.73411431693812	4.51774866905047	4.70368229020729	4.52928059005679	4.74766655110173	4.6153678603121	-0.0866661577180356	0.809216924987075	0.926362488588753
Merged-chr1-36038962-4	chr1	36038868	36039068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29432.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	6.10794349281208	5.83884891057615	5.93288194799876	6.1360049841908	6.32965455832737	5.93487353993626	6.1947423612383	6.47520137125704	0.363629079463427	0.142543719566606	0.420143331819144
Merged-chr7-73558623-4	chr7	73558531	73558731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037569)	promoter-TSS (NR_037569)	-236.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	9.15692073192846	9.24359361562142	9.41602742468641	9.18679697330019	9.25181741409104	9.40208968548272	9.27501444055148	9.08341139526303	0.00524993515857825	0.9718862780563	0.989768551725772
Merged-chr14-44988351-8	chr14	44988260	44988460	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008964, exon 1 of 2)	5' UTR (NM_008964, exon 1 of 2)	249.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	4.1411201680523	4.70124407759624	4.74035086844182	4.57822799850996	4.19618422621482	4.26914344339415	4.68298197459627	4.63047788600841	-0.23597770551785	0.561128983916999	0.804849597634179
Merged-chr19-6513971-2	chr19	6513871	6514071	+	868.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 20 of 22)	intron (NM_001205234, intron 20 of 22)	29099.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	2.568463610731	2.49291858230676	2.41993525045324	2.24413542149497	2.91251129352711	2.9942851115873	2.69276039101698	2.76376617516333	2.26772336923985	0.00114889894384036	0.0150599747298316
Merged-chr18-60723374-4	chr18	60723277	60723477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	4189.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	6.13879529011893	6.45110246424755	5.91604561695016	6.66168125910304	6.25121235339612	6.18751338664186	6.12870353856291	5.88716358035066	-0.332299414400592	0.217349427182428	0.524235535136662
Merged-chr5-105507773-4	chr5	105507639	105507839	+	921.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-11732.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	3.00670082846013	3.07991626226374	3.44295781632714	2.97270878492695	2.50059551318774	2.63314685987029	2.59875372387884	2.67992177616394	-2.9112668923939	0.000228991294808601	0.00406975564873444
Merged-chr10-61452331-3	chr10	61452255	61452455	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010124, intron 1 of 2)	CpG	314.0	NM_010124	13688.0	Mm.259516	NM_010124	ENSMUSG00000020091	Eif4ebp2	2810011I19Rik|4E-BP2|AA792569|BC010348|PHAS-II	eukaryotic translation initiation factor 4E binding protein 2	protein-coding	4.94607140390069	4.66322868911326	4.65211359539823	4.80519680294496	4.61277516623146	5.04945568764058	4.78515090102241	4.91032876109192	0.136212248228675	0.69024854587239	0.873785324867519
Merged-chr18-32163446-3	chr18	32163352	32163552	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011946, exon 1 of 17)	5' UTR (NM_011946, exon 1 of 17)	363.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	6.3511196080841	5.96715257350851	6.38565800305257	6.00071106623577	6.19898967700656	6.08740818325813	5.85600448811945	6.12608914635631	-0.151303713345859	0.547558057477159	0.796916412152817
Merged-chr5-148708216-4	chr5	148708121	148708321	+	955.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-33619.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	4.82854125374014	4.61687348177968	5.11860672853354	4.96000464738771	6.07819370422658	6.117442395426	6.07668741253012	5.7270358697055	1.91440314741621	1.06316395460655e-10	8.08493024839101e-09
Merged-chr9-119983202-4	chr9	119983109	119983309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357560)	promoter-TSS (NM_001357560)	-186.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	7.21690473909124	7.71286772769245	6.75621546648152	6.57228187605694	7.50174514800227	7.78974157419294	7.07865692270692	7.21308934852384	0.38212485113256	0.186969753741558	0.485173900895748
Merged-chr3-28099378-4	chr3	28099266	28099466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 19 of 25)	intron (NM_008875, intron 19 of 25)	115195.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	6.79066665541968	6.88690470769692	7.10232305554748	6.97954392959494	7.07016293097264	7.06736533355182	7.0318745563597	6.8992157666273	0.102609250995173	0.593579298080433	0.822876522679178
Merged-chr10-115343264-4	chr10	115343176	115343376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359472, intron 6 of 6)	intron (NM_001359472, intron 6 of 6)	18973.0	NM_001359470	67226.0	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	5.37253983543499	5.24433421874179	5.54839434003108	6.09975207161143	5.42210006817323	5.27721249192944	5.91373972560103	5.97806724449737	0.0845692842540587	0.809902688995845	0.92673441581447
Merged-chr4-142077176-1	chr4	142077076	142077276	+	641.5	f0_balb.idr	intron (NM_145402, intron 1 of 2)	ID_B1|SINE|B4	-7122.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	3.48759067371272	3.16260267010025	3.58260579607994	3.35113986296676	3.38515713429747	3.05540944145397	3.07818621468684	3.213628331601	-0.747131432691443	0.192754367680417	0.492623716818943
Merged-chr1-179760795-4	chr1	179760708	179760908	+	663.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026375, intron 29 of 35)	B1_Mus1|SINE|Alu	43207.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	3.88200812963713	3.50439206401021	3.57741148590069	4.05817996653318	3.66345264229372	3.50725952601216	3.61954218247518	3.83423318710072	-0.381059101129892	0.451104774968067	0.735774833837515
Merged-chr5-91278695-4	chr5	91278608	91278808	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040428, intron 3 of 5)	intron (NR_040428, intron 3 of 5)	4368.0	NR_040428	100503265.0	Mm.125059	NR_040428	ENSMUSG00000107198	Gm19619	-	predicted gene, 19619	ncRNA	5.82265583898553	5.58651547488251	5.97194790787702	6.50317456380727	4.82347312525128	5.22973176078369	5.54770798599635	5.39703393629111	-1.29032705285836	0.00016314574514059	0.00306561536255599
Merged-chr8-71519206-4	chr8	71519131	71519331	+	779.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7462.0	NM_032398	84094.0	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	3.91029467449665	4.35175284891148	3.79975486586591	3.63228867482812	4.32375693208187	4.23441010086618	4.25927504769621	3.79770941329436	0.585165046925571	0.21777497551068	0.524692989265637
Merged-chr14-31406303-4	chr14	31406184	31406384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	11393.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	5.59459569078148	5.2638167350182	5.23792962756796	5.57121518665092	5.24633411525401	5.0944664174819	5.3325037320225	5.16915250268177	-0.397613424486162	0.179636213873922	0.475858804143353
Merged-chr3-21841074-4	chr3	21840978	21841178	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-235574.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.06968166950822	5.14364332088753	5.47098103591532	5.21183714600297	4.96175614425387	4.94757213975358	5.14230542384558	4.88675262383969	-0.462611005433782	0.137602892596038	0.412668433979792
Merged-chr19-5724747-4	chr19	5724639	5724839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114595, intron 1 of 17)	intron (NM_001114595, intron 1 of 17)	1578.0	NM_001114595	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	7.82695742986915	7.99535313797636	7.75234696244459	7.51842708043863	7.47885794892118	7.91389962202904	7.60875691299259	7.40751770737752	-0.217854945988933	0.278521491784271	0.590694275183619
Merged-chr3-145758920-4	chr3	145758882	145759082	+	764.402771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026993, exon 1 of 6)	exon (NM_026993, exon 1 of 6)	290.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	4.09695063620425	3.88906802544017	3.67154451902652	4.14336982118355	4.01388866696423	3.85336523487995	4.03371106358389	4.48202315224957	0.377371512595613	0.416116521995275	0.710072021761014
Merged-chr18-53903803-4	chr18	53903648	53903848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 3 of 12)	intron (NM_152809, intron 3 of 12)	41635.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	7.39029718864401	7.84311694135035	7.33980304874666	7.50943919641306	7.49600998341696	7.67563804747171	7.69748472606053	7.24721176281973	0.00109069219348688	0.99574038610837	0.998475782469397
Merged-chr8-111562620-4	chr8	111562525	111562725	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	24282.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	6.14545175832086	5.70101745610689	5.04698925231651	5.55144748702855	5.65486881523802	5.22964493965853	5.45315962485824	5.35831458552328	-0.384316137224986	0.256207463541648	0.567812876264657
Merged-chr17-34631019-4	chr17	34630905	34631105	+	682.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030890, exon 2 of 4)	exon (NM_030890, exon 2 of 4)	1319.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	3.637213748892	3.55890169675494	4.04129136745855	3.40404668340223	3.82904328636527	3.75879396274828	3.78785080683874	4.37734911790419	0.831557101146373	0.100721008673431	0.348392490833228
Merged-chr17-53980096-2	chr17	53979998	53980198	+	770.0	f0_balb.idr|f1_balb.idr	intron (NM_018751, intron 1 of 7)	L1_Mur3|LINE|L1	10533.0	NM_018751	20888.0	Mm.10108	NM_018751	ENSMUSG00000023943	Sult1c1	(PST)G|P-SULT|ST1C1|Stp2|Sult1a2|mOLFST	sulfotransferase family, cytosolic, 1C, member 1	protein-coding	3.8676456630593	3.61173887408378	3.54824259375192	4.2405336786747	2.71759507268321	2.92551895148559	3.04212859114307	2.89354953304759	-5.29133819434211	3.06103570391891e-07	1.1847822749823e-05
Merged-chr16-36636940-4	chr16	36636847	36637047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	MTD|LTR|ERVL-MaLR	29130.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	7.09889090014302	6.91336884254125	6.80689668469464	6.91905225334029	6.71647895504618	7.03976502068499	7.08683138495725	6.87186201927772	-0.0115830934864791	0.954471250874073	0.983764634562976
Merged-chr15-100622371-4	chr15	100622269	100622469	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033872, intron 3 of 3)	intron (NM_001033872, intron 3 of 3)	6707.0	NM_011873	23994.0	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	5.13421587134489	4.80654314485232	5.26318185024857	5.74815539626249	5.16770783026629	5.09483864042726	5.1429834201559	5.53203021707627	-0.108388525143439	0.762958603823229	0.907015239695587
Merged-chr8-106153695-2	chr8	106153595	106153795	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 1 of 5)	intron (NM_001357319, intron 1 of 5)	3341.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	2.79078458714738	2.94599032268771	2.63809028876005	2.8670624957917	3.00057312139943	3.3361718075702	3.15476584045816	3.27076957053674	1.53396851239619	0.0136414048922835	0.0981979731824281
Merged-chr2-167942972-4	chr2	167942878	167943078	+	916.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	10651.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	4.69709309759603	4.78910569679551	4.73432015056463	4.53466367047181	4.44892525138484	4.79370966281383	4.43421934213755	4.40581254518425	-0.35014554918913	0.334353116009976	0.644963887954771
Merged-chr7-84688115-4	chr7	84687994	84688194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360577, intron 1 of 7)	intron (NM_001360577, intron 1 of 7)	-1546.0	NR_038175	72495.0	Mm.382914	NR_038175	ENSMUSG00000085236	2610206C17Rik	-	RIKEN cDNA 2610206C17 gene	ncRNA	5.07604164409802	5.02757537097955	5.00648878057175	5.12822633267243	5.27812700175259	5.34903906528492	5.21244814729018	5.40370790211582	0.452448552320549	0.119923256806806	0.383350652881906
Merged-chr14-7850953-3	chr14	7850855	7851055	+	681.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081427, intron 1 of 45)	RMER5|LTR|ERV1	32998.0	NM_134080	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	3.05858625475144	2.95679149884353	3.23403916100874	3.04143238093696	2.71239827336169	3.40296651192243	3.04787729964688	3.23214809777509	0.17828488936631	0.775366554661768	0.912320643528997
Merged-chr2-166730764-4	chr2	166730658	166730858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16926.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	5.4285612666135	5.9235085699199	5.60951925090457	6.005602373745	6.13735975617305	5.89298470998779	6.0988211953034	5.4574939376682	0.243952571465669	0.414281759342227	0.709044594374843
Merged-chr1-86215436-4	chr1	86215332	86215532	+	769.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027456, intron 19 of 20)	MTD|LTR|ERVL-MaLR	60652.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	3.89596654921456	3.69734673813754	3.5328319521272	4.16227212246752	3.67623748683459	3.52166311964549	3.52027532499216	3.80049792740314	-0.666683215990709	0.189852697646016	0.488976178326708
Merged-chr13-92986917-3	chr13	92986806	92987006	+	850.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86398.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	3.43047673960001	3.5009526910145	3.43091848698086	3.2517321789809	3.73071485282871	3.54580916829584	3.52768629002512	3.59198599326574	0.70014520793583	0.153960623261473	0.439000248492905
Merged-chr7-118533185-8	chr7	118533101	118533301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001304758, exon 1 of 7)	exon (NM_001304758, exon 1 of 7)	155.0	NM_001304758	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	6.06023289639715	6.37037182798424	6.71612482359286	6.31425925360273	6.56728313511153	7.02559776234472	6.44963069234532	6.87084301490294	0.522324660574001	0.0366563586742297	0.190575045947922
Merged-chr7-90212953-4	chr7	90212851	90213051	+	933.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52481.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	3.92527883884098	3.73090753508113	3.97995617862779	4.18551461825406	4.28751643141158	3.99292772199522	4.40339328984242	4.65960502546581	0.940073469356455	0.035859521666342	0.188094686270343
Merged-chr4-71489086-4	chr4	71488991	71489191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	711802.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	6.26452264720243	5.80410416439061	5.84351610945751	6.51615340558997	6.08400047386701	5.97054397925608	6.23348570448643	5.88846450169813	-0.167181488025137	0.551030726777277	0.798799956417849
Merged-chr1-58586773-2	chr1	58586673	58586873	+	779.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172513)	promoter-TSS (NM_172513)	376.0	NM_025597	66495.0	Mm.2033	NM_025597	ENSMUSG00000026032	Ndufb3	2700033I16Rik|CI-B12	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3	protein-coding	3.5221423694323	3.71445498959584	3.78577628950889	3.31494751868008	3.55700503582744	3.7530686068184	3.56563992137315	3.83008397053362	0.291853105826564	0.558770755726008	0.803359934188849
Merged-chr8-81375306-4	chr8	81375186	81375386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024617, intron 1 of 24)	intron (NM_001024617, intron 1 of 24)	32724.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	5.53953302704197	5.72860660428631	5.54049380763785	5.35715181487214	5.84129488049453	6.14741886040417	5.92352789695518	5.69831228633928	0.614725849767627	0.0216061574277213	0.134750256685164
Merged-chr4-135236878-4	chr4	135236774	135236974	+	972.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 2 of 5)	intron (NM_013885, intron 2 of 5)	35886.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	5.24601466262853	5.1987366140208	5.7207161859457	5.48416464437704	4.84180989325095	5.35793393911156	5.39816033032433	5.4216393787072	-0.296994843674921	0.35941483489134	0.665282897298868
Merged-chr12-117560634-4	chr12	117560557	117560757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 3 of 27)	intron (NM_175930, intron 3 of 27)	44178.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	7.38922464695421	7.30415082522087	8.07713893975944	8.12018119113059	8.06535410467014	7.76696999889059	8.16239679531041	7.93392935046206	0.26797416587379	0.260179401414607	0.571936677371535
Merged-chr7-102636862-4	chr7	102636764	102636964	+	819.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3384.0	NM_146325	258322.0	Mm.377435	NM_146325	ENSMUSG00000073971	Olfr554	MOR25-1	olfactory receptor 554	protein-coding	4.08791688700952	3.65136180610586	3.94497220377494	3.98751514958603	4.16424774084123	3.96073773536963	4.02493038834968	4.25491882281626	0.478715367476344	0.268631904091172	0.580260491970544
Merged-chr10-99108151-4	chr10	99108051	99108251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015737)	promoter-TSS (NM_015737)	16.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	6.70611234188098	6.84103920077315	6.73679471366739	6.80873804890199	6.76016200630647	6.72553597865406	6.85279105904352	6.56055676534371	-0.0673455732824862	0.73568732857265	0.895629391634899
Merged-chr11-3931684-1	chr11	3931584	3931784	+	743.0	f0_balb.idr	intron (NM_001130458, intron 1 of 9)	intron (NM_001130458, intron 1 of 9)	277.0	NM_001130459	21452.0	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	3.96522766762901	3.62836470832007	4.05624401492915	3.99325514553791	3.83516003084273	3.76668449860429	3.9941470317252	3.91574807580672	-0.120388921741276	0.788629484061824	0.91812687233996
Merged-chr2-24104076-4	chr2	24103981	24104181	+	905.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-7486.0	NR_110359	227606.0	Mm.301625	NM_199059	ENSMUSG00000061809	Tbpl2	Gm348|Trf3	TATA box binding protein like 2	protein-coding	4.76504023008282	4.37886841107885	4.65311164845127	4.95670934611885	4.30736519488938	4.82595435147556	4.70686247450147	4.68871228943886	-0.174244112172418	0.649398092129895	0.85269354452399
Merged-chr14-54576696-3	chr14	54576597	54576797	+	735.6190190000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010590, exon 1 of 8)	exon (NM_010590, exon 1 of 8)	964.0	NM_010590	16475.0	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	3.45907086488554	3.32837870017157	3.15516826756546	3.10932501517731	3.20088097784568	3.68288928932288	3.49789057727031	3.65814126083039	0.882368407750552	0.102437403191899	0.351572369808042
Merged-chr3-108210554-4	chr3	108210444	108210644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289545)	promoter-TSS (NM_001289545)	-17.0	NM_175183	72522.0	Mm.187326	NM_175183	ENSMUSG00000048997	Atxn7l2	2610528J18Rik	ataxin 7-like 2	protein-coding	7.37780926396144	7.61725310579544	7.59315645260786	7.19599658116643	7.52904227570871	7.72665033720173	7.53865994459986	7.23456857341021	0.0918675340307084	0.64809749113705	0.851973023337718
Merged-chr2-34913377-3	chr2	34913275	34913475	+	857.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028716, intron 1 of 14)	CpG	601.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	3.73993742438908	4.01770157702424	3.94619888820965	3.4892768495261	3.73142584392945	3.80374396506037	4.14434438860051	4.035366274954	0.375617919629558	0.431421395744475	0.72169550006336
Merged-chr5-34233107-4	chr5	34233012	34233212	+	719.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 5 of 12)	intron (NM_001015039, intron 5 of 12)	-45402.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	3.95482885412313	3.48928617601872	3.77389130752312	3.7038635018632	3.80405252953404	3.42284142120092	3.70870100756399	3.61630207947537	-0.255364029823871	0.604780046748815	0.828552936841395
Merged-chr15-100227226-4	chr15	100227142	100227342	+	897.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007497)	promoter-TSS (NM_007497)	-617.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	4.51875489438134	4.49144837107853	4.15220235835877	3.84492316163368	4.44274822161576	4.84025988891988	4.45789824365826	4.66698308091466	0.783745315356248	0.060939474379494	0.260925117909518
Merged-chr2-53011437-3	chr2	53011346	53011546	+	968.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	153578.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.6046455961549	3.52393336841033	4.10232544505504	3.89959283583875	3.69180998593511	3.54291396667781	3.53533632610438	3.4260868827977	-0.765662894194489	0.134283584463564	0.407911030152443
Merged-chr13-28417706-4	chr13	28417605	28417805	+	969.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	275221.0	NM_023746	28078.0	Mm.155058	NM_023746	ENSMUSG00000017064	Prl5a1	1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl	prolactin family 5, subfamily a, member 1	protein-coding	5.16837224604611	5.07459652896589	6.04067870667748	6.38376327873799	4.67229349347854	4.50276757053995	5.00168707515886	5.09630858569392	-1.72793214743663	4.66426873099923e-05	0.00106362020405878
Merged-chr1-162040721-3	chr1	162040601	162040801	+	918.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172646, intron 16 of 19)	L1MC4|LINE|L1	35732.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	3.50217509273928	3.86740834022099	3.50261924722325	3.73473451018407	3.53846112118318	3.77985114348737	3.31113488646004	3.55655420800725	-0.364025442651309	0.475572582358739	0.752373329474411
Merged-chr12-78227500-6	chr12	78227446	78227646	+	871.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172952, intron 1 of 23)	intron (NM_172952, intron 1 of 23)	891.0	NM_145965	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	4.40182784155963	4.22248154952262	4.44651828787718	4.49722534809337	4.64290649512968	4.57681524639393	4.58719010804528	4.74945645506525	0.530096907741498	0.140062557759599	0.416157580026199
Merged-chr18-88866645-4	chr18	88866548	88866748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	27559.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	6.1587695536662	5.93644773581275	5.79171674616991	6.42074017403555	6.0196880615994	5.75225412697207	5.85850805966719	5.59849088291278	-0.46184637215449	0.096194173844168	0.33988608091606
Merged-chr4-126541038-4	chr4	126540920	126541120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7562.0	NM_153177	76850.0	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	6.6932081098409	6.32388299553834	6.13203640517502	6.55365545708488	6.39786131207211	6.48803479825183	5.94173344984206	6.32592887951464	-0.211598433534251	0.3986500039336	0.696793179038619
Merged-chr17-46202708-4	chr17	46202626	46202826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030715)	promoter-TSS (NM_030715)	-101.0	NM_030715	80905.0	Mm.311585	NM_030715	ENSMUSG00000023953	Polh	RAD30A|XPV	polymerase (DNA directed), eta (RAD 30 related)	protein-coding	7.45799705410873	7.60350327711322	7.08717582072871	7.16633511436718	7.45673719980484	7.71869475733566	7.49566376012244	7.58005052302668	0.295192972414665	0.137573562103385	0.412622999157398
Merged-chr2-112449775-3	chr2	112449674	112449874	+	714.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5251.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	3.37066844518448	3.41029776540546	3.37108251663604	3.32501881436049	3.7755602060092	3.60303460227925	3.72181207606865	3.42865425288178	0.915234155597339	0.061823447776318	0.263095252258193
Merged-chr9-44344001-4	chr9	44343888	44344088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013551, intron 1 of 13)	CpG	240.0	NM_013551	15288.0	Mm.247676	NM_013551	ENSMUSG00000032126	Hmbs	PBGD|T25658|Ups|Uros1	hydroxymethylbilane synthase	protein-coding	7.31038305715686	7.48640519193984	7.55192031044933	7.19511006428973	7.31306479881803	7.73749950276445	7.18774332107991	7.55542956329633	0.0991393094320721	0.628233429256222	0.841427212108636
Merged-chr6-72093352-3	chr6	72093273	72093473	+	914.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4235.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	3.807934930471	3.52577706214936	3.45681119812523	3.91860292638955	3.34042545959539	3.24244687555808	3.38564194481476	3.61749485587961	-0.989310358405176	0.0640993795064936	0.268959691070789
Merged-chr16-10384418-3	chr16	10384321	10384521	+	851.125	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099275, intron 3 of 5)	intron (NM_001099275, intron 3 of 5)	11027.0	NM_001099275	70426.0	Mm.142181	NM_001099275	ENSMUSG00000039179	Tekt5	3300001K11Rik	tektin 5	protein-coding	3.82413610408461	3.49269337064559	3.82472822947624	3.52891298883651	3.42662977974237	3.63285555209064	3.66441003174295	3.5710889675488	-0.302888771349904	0.538888674762921	0.791857080531585
Merged-chr4-49607321-4	chr4	49607224	49607424	+	871.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-9448.0	NM_025944	67063.0	Mm.454013	NM_025944	ENSMUSG00000039611	Tmem246	2810432L12Rik|9330170P15Rik|AI835809	transmembrane protein 246	protein-coding	4.18097254159884	4.18734482769229	4.49202728193749	4.45867526029755	4.35576467403867	4.25659318072288	4.43152573974197	4.70515452657296	0.235610974295815	0.547230295630308	0.796762026973831
Merged-chr7-30121860-4	chr7	30121783	30121983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081007)	promoter-TSS (NM_001081007)	-49.0	NM_001081007	233060.0	Mm.443484	NM_001081007	ENSMUSG00000074220	Zfp382	4930428B01Rik|5930415A09Rik|KS1|Znf382	zinc finger protein 382	protein-coding	6.584400556175	6.21505854470867	6.18579738195255	6.66429644955049	6.03512334762114	6.09262319012394	6.53697714211115	6.33516440341919	-0.269105332412721	0.292186976797666	0.604578784515469
Merged-chr1-107583049-4	chr1	107582942	107583142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-6964.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	7.87390834592123	7.95859801878829	8.11851976421772	7.80222268548977	7.83105261139332	7.72240881414017	7.45954129341657	7.81044658166305	-0.287610888471851	0.10935760495891	0.365191500041067
Merged-chr5-65102833-4	chr5	65102738	65102938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4730.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	5.78061948695204	5.41517622805701	5.89746153538509	6.00804128058314	5.62478071869708	6.04913516128512	5.72792746549711	5.84823209964923	0.015279416703109	0.956525062757843	0.984691114511791
Merged-chr12-73613305-4	chr12	73613209	73613409	+	965.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	28513.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	4.92380004942433	5.15346531908967	4.69633533578535	5.01756773485805	4.79031025807511	4.91330448190879	4.40102888243483	5.20096357320611	-0.215886203030464	0.554690200431217	0.80100411386447
Merged-chr17-56938972-4	chr17	56938893	56939093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-3605.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	6.73965580442383	6.7734549618266	6.3505654597412	6.89212543105244	6.7701963927728	7.13056219453248	6.64700029662949	6.79307388220269	0.179778953025703	0.431620110571017	0.72175353009052
Merged-chr7-45525043-4	chr7	45524914	45525114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008654, exon 2 of 3)	exon (NM_008654, exon 2 of 3)	1254.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	6.19720982347994	6.91500191578867	6.73766884662248	6.29826090393738	6.79685377218501	6.44042304726095	6.79823990362489	6.73286694423794	0.198985911627123	0.428659652610037	0.71961368508163
Merged-chr3-127792362-4	chr3	127792259	127792459	+	943.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356430, intron 2 of 2)	intron (NM_001356430, intron 2 of 2)	1702.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	4.66222642408875	4.25226757265427	4.26667783699815	4.50421245921608	4.61354581290218	4.34616498498873	4.1023225653796	4.16774136394372	-0.232673026517161	0.570720857023578	0.81018968611422
Merged-chr8-71367483-4	chr8	71367385	71367585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025917, intron 1 of 7)	intron (NM_025917, intron 1 of 7)	268.0	NM_025917	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	6.85097554296022	7.03178231987199	6.71617630557033	6.87014368591154	7.30428993101575	7.45049370756225	7.29747934338029	7.17341128982554	0.594310630869246	0.00178661760127868	0.0214126375217066
Merged-chr16-91450332-2	chr16	91450232	91450432	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-14772.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	2.91496465345908	2.89046738214069	3.36359934194901	2.9427922699428	2.94608868270785	3.15320930380755	3.14774616171857	3.158472584442	0.259413766246455	0.6633384630512	0.860482180927763
Merged-chr8-61590087-2	chr8	61589987	61590187	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	1082.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	3.1800596322408	2.96536617858153	2.86581834019534	2.86067999644879	2.81578633260752	2.84331892934055	2.52030523019183	2.66945622223069	-1.21046497926665	0.0762852456820672	0.298263009064823
Merged-chr2-45185439-4	chr2	45185325	45185525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67983.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	5.15787688969425	5.43790069563718	5.25776960755586	5.6590890886726	5.20205784646951	5.46358055683045	5.29345279659879	5.37513433254948	-0.150054410288261	0.61880384534245	0.836069984200111
Merged-chr19-47138309-4	chr19	47138208	47138408	+	969.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133746)	promoter-TSS (NM_133746)	-14.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	4.88602466789027	4.91494925446146	4.73068478605837	5.09268250689421	4.76216221890579	5.16516201971975	5.29157301475485	4.76841625962021	0.167326028871684	0.628030042659642	0.841427212108636
Merged-chr9-113725776-4	chr9	113725682	113725882	+	978.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15691.0	NM_001286599	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	5.00858032500303	5.17520706572343	5.45420106757942	5.14096656958213	5.03756822372617	4.82504780769033	5.11896563981508	5.20297898879766	-0.274627675695346	0.382725417060236	0.684713528902895
Merged-chr1-144243639-4	chr1	144243507	144243707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5497.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	5.70787444885423	5.77127688636281	6.03772579490449	5.67497954061434	5.47113702010735	5.77961935703554	5.65477350850429	5.80177384060259	-0.204893495064845	0.443214956347002	0.729812325116785
Merged-chr16-92415888-4	chr16	92415788	92415988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-15810.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	7.62900959950096	7.93546286236308	8.37817967315065	7.93381136069237	7.37873965281884	7.55733381220785	7.70150501668829	7.59854340210407	-0.568419351765958	0.00599341379597129	0.0542009989938778
Merged-chr15-78532287-4	chr15	78532169	78532369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2618.0	NM_028331	72709.0	Mm.34776	NM_028331	ENSMUSG00000022440	C1qtnf6	2810036M19Rik|CTRP6	C1q and tumor necrosis factor related protein 6	protein-coding	5.96780876918681	5.83299991151213	5.81514050727134	5.54433105364856	5.8650895173472	5.73378338404721	5.85331701205218	5.46412281422254	-0.0637570837700251	0.814703481850993	0.928475257131656
Merged-chr4-3574907-4	chr4	3574828	3575028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054089)	promoter-TSS (NM_054089)	49.0	NM_054089	116940.0	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	6.70931162794829	7.02813414049651	6.71049244335531	6.92841080230094	6.92458811733125	6.54823958132366	6.80346298486353	6.42237434532075	-0.223165513009698	0.317905531087428	0.629785633099695
Merged-chr6-13605463-3	chr6	13605373	13605573	+	903.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028990, intron 1 of 4)	intron (NM_028990, intron 1 of 4)	2625.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	3.66820427678135	3.80769321939274	3.76636235417754	3.73131037945262	3.51288301563298	3.43483889715202	3.31128002843996	3.61491497823077	-0.874863080174034	0.0765363228325849	0.298934313153016
Merged-chr13-35482505-4	chr13	35482396	35482596	+	912.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177366.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	4.11045703521661	3.81786504138932	3.81786044073603	4.55918994385722	4.10123717118565	3.62855509030304	3.90696990255879	3.86941107838757	-0.633204274932801	0.209442282205112	0.513944471391425
Merged-chr1-34842920-7	chr1	34842777	34842977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001160235, exon 1 of 8)	5' UTR (NM_001160235, exon 1 of 8)	173.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	5.71659667639601	5.75605797350974	6.09969626283533	5.40701977320373	5.62791464052059	5.86743181450378	5.50300726110906	5.61023712989184	-0.15835362385173	0.586616896527647	0.818769811517176
Merged-chr1-184083275-3	chr1	184083175	184083375	+	955.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48894.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	3.73024375743034	4.06581235450598	4.15706205596089	4.56253927054397	3.96410077668896	3.97337022414421	3.89147206379374	4.5751463330731	-0.110549783468005	0.824772870268953	0.932789825291069
Merged-chr1-78895466-3	chr1	78895367	78895567	+	880.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151519, intron 3 of 3)	intron (NR_151519, intron 3 of 3)	78556.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	3.55253053976031	3.23249901582223	3.25598699232844	3.10460816489284	3.39420676387007	2.89953705801725	3.06625815140124	3.00949180092538	-0.670463565851394	0.276261633013608	0.588302970120437
Merged-chr8-71298694-4	chr8	71298603	71298803	+	937.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	L1MB5|LINE|L1	25989.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	4.57374654390556	4.91801437553172	4.8613477765733	5.11702085428615	4.679169436391	4.88174542331479	5.03974134449573	5.15162137681125	0.0872520226853166	0.803910569356397	0.924434165595874
Merged-chr12-21318311-3	chr12	21318148	21318348	+	753.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026347, intron 3 of 5)	intron (NM_026347, intron 3 of 5)	1856.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	3.02901705032989	2.97366174300561	2.96903369609991	2.76546127911215	2.91105829336933	3.14025332440851	2.83050675626875	3.14046608782222	0.341312299958569	0.568853256695307	0.809079947213813
Merged-chr18-30088625-4	chr18	30088517	30088717	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-184248.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	6.87878624822804	6.82624594360371	7.20322200530603	7.18966175004088	5.70135472414995	5.64679021127267	5.49767086005578	5.22002058022582	-2.2894881665947	1.84970942036932e-18	5.0444623307459e-16
Merged-chr17-83485471-4	chr17	83485365	83485565	+	863.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28868.0	NM_009187	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	3.46275538517621	3.64490790722861	3.79187609039607	3.56097442572714	3.97314296097444	3.6380919938532	3.82287451129113	3.78964109930571	0.617391029800092	0.18605648224725	0.483993006368217
Merged-chr9-86449763-3	chr9	86449653	86449853	+	890.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027394, intron 2 of 9)	intron (NM_027394, intron 2 of 9)	15163.0	NM_027394	70348.0	Mm.53469	NM_027394	ENSMUSG00000032415	Ube2cbp	2610018I03Rik|Ube3d	ubiquitin-conjugating enzyme E2C binding protein	protein-coding	3.20734520848268	3.46647808731884	3.26732389928878	3.1230763817026	3.16669908211493	3.31970901306499	3.31130987172499	3.37692932601994	0.0943973695784323	0.860727309026193	0.947388339351386
Merged-chr13-23535294-4	chr13	23535186	23535386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145073)	promoter-TSS (NM_145073)	-132.0	NM_145073	97908.0	Mm.261657	NM_145073	ENSMUSG00000099517	Hist1h3g	H3.1-221|M32460	histone cluster 1, H3g	protein-coding	6.30823876661744	5.87105950236398	5.90741611487878	5.74792692912023	6.10408677351709	6.13003717752982	6.22458389716129	6.12001603686308	0.288952052459281	0.250458013512839	0.561579806074355
Merged-chr2-94389189-4	chr2	94389080	94389280	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183106, intron 1 of 24)	intron (NM_183106, intron 1 of 24)	17509.0	NM_183106	74569.0	Mm.248504	NM_183106	ENSMUSG00000027194	Ttc17	9130020K17Rik|D2Bwg1005e	tetratricopeptide repeat domain 17	protein-coding	5.53150801745343	5.43988391564593	5.68465063367591	5.56959888258486	5.39771417221358	5.18859303857342	5.63182472719163	5.63195796270755	-0.143959537418225	0.607382987969696	0.829999364685165
Merged-chr10-36975267-2	chr10	36975167	36975367	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008229, intron 1 of 13)	intron (NM_008229, intron 1 of 13)	723.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	3.93858379901994	3.74658393573242	3.88801243297281	4.01364497322618	4.23616308070233	4.11049815068215	3.82026391753313	4.24558862795841	0.566382807388711	0.193581676446118	0.493731393226286
Merged-chr1-131345596-1	chr1	131345496	131345696	+	787.25	f0_balb.idr	intron (NM_001081011, intron 9 of 22)	intron (NM_001081011, intron 9 of 22)	-66033.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	3.53385308061762	3.73023998441482	3.77740632850196	3.61562929453635	3.16237526931309	3.41437639769148	3.15673275414525	3.53234405226226	-1.2037223846085	0.0249148013533322	0.148105114876301
Merged-chr5-8349737-4	chr5	8349616	8349816	+	981.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	18444.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	5.22401380386884	5.49995332959495	5.72727016239675	5.72113692628918	5.61229317397387	5.56096303073036	5.50031550936241	5.15117309901862	-0.164614945624215	0.579839115849012	0.815494836491523
Merged-chr5-150665035-3	chr5	150664967	150665167	+	865.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362416, intron 1 of 7)	intron (NM_001362416, intron 1 of 7)	545.0	NM_001362416	381695.0	Mm.246934	NM_201369	ENSMUSG00000029655	N4bp2l2	2700092H06Rik|Gm38758|zag1	NEDD4 binding protein 2-like 2	protein-coding	4.30898792604749	4.45628680017606	4.83931950067265	4.413376982771	4.40099284277329	4.83317609577504	4.55988573727917	5.0212204790938	0.444754031477491	0.252588415212192	0.563852186112672
Merged-chr2-142703093-4	chr2	142702994	142703194	+	756.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 22 of 26)	L1MA4A|LINE|L1	198370.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	3.53261751493326	3.77756054710596	3.59157113977391	3.780494118684	3.96462380297692	3.5867511858163	3.63353381844502	3.93785119790718	0.341975519168816	0.475521843468167	0.752326501360762
Merged-chr2-80315094-4	chr2	80314978	80315178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024181)	promoter-TSS (NM_024181)	-388.0	NM_024181	66861.0	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	5.40931927338596	5.70025313905573	5.58680907357802	5.75178088147937	5.84246213095121	6.11611322969039	5.41438916434668	5.76187680880727	0.291398596040787	0.304806824170696	0.617341365173173
Merged-chr4-134526402-4	chr4	134526294	134526494	+	851.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029759, exon 7 of 7)	3' UTR (NM_029759, exon 7 of 7)	8702.0	NM_001355188	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	3.69120803328777	4.06960466609399	3.97657079748187	3.78779854110524	3.95806882011917	4.10142623437509	4.35032432228544	4.54349867530856	0.955389279421361	0.0310509357825009	0.17127825155476
Merged-chr15-41751619-4	chr15	41751456	41751656	+	741.924988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-37439.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	3.64728107229779	3.26517398644771	3.59777650649271	3.6522409387349	3.5053660369739	3.36100728531362	3.23824891344966	3.78454464547733	-0.204745609287835	0.702877399326439	0.880424292242087
Merged-chr8-47939981-4	chr8	47939907	47940107	+	834.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 1 of 22)	intron (NM_133791, intron 1 of 22)	50544.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	4.22813996780905	4.3216577872208	4.36163626273983	4.70794602468713	4.17325115188355	3.97645795332157	4.06406734152745	4.58853072781044	-0.503327866525073	0.243234455224818	0.554234755376378
Merged-chr18-67641487-4	chr18	67641377	67641577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134138)	promoter-TSS (NM_134138)	-122.0	NM_001081073	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	6.79148102872416	6.74749386747064	6.87054840585312	6.61297238864078	6.28362226188219	6.38447449553171	6.31450852844946	6.56894555348236	-0.526827092634401	0.01393645509321	0.0996867588262076
Merged-chr13-99323850-4	chr13	99323763	99323963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 8 of 9)	intron (NM_026873, intron 8 of 9)	20815.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	7.62981039750251	7.85144021661895	7.7817614545271	7.4728386462649	7.44078513145121	7.53675522760199	7.63499999349916	7.12500749352821	-0.315496820577366	0.110186781030497	0.366573710612399
Merged-chr5-8058267-3	chr5	8058173	8058373	+	861.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080974, intron 2 of 7)	intron (NM_001080974, intron 2 of 7)	1731.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	4.16890313231484	3.91663221623538	4.21242368301353	4.24183360881611	4.0392600208263	3.75711399453852	3.86165551571202	4.33000447119583	-0.331106317997269	0.456172933947409	0.73955513964784
Merged-chr10-86727810-4	chr10	86727724	86727924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003910, intron 4 of 15)	intron (NM_001003910, intron 4 of 15)	15059.0	NM_153595	103220.0	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	7.02472563321188	6.42252968939669	6.8481875259597	6.91084751693389	6.24576030411158	6.16648047169195	6.2041957058155	6.49277148661771	-0.784964955133568	0.00089616341181997	0.0123459173661037
Merged-chr13-34792775-4	chr13	34792681	34792881	+	951.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53139.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	4.99586216964335	4.91003526762482	5.11898057182292	4.93030042672861	4.64733852486075	4.76029695181275	4.64712407071142	4.66553157880185	-0.635325684438658	0.0533447702056235	0.240989299217192
Merged-chr1-130716812-7	chr1	130716680	130716880	+	848.619019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027859)	promoter-TSS (NR_027859)	-547.0	NM_178691	226418.0	Mm.106553	NM_178691	ENSMUSG00000046404	Yod1	6330564D18Rik|9930028C20Rik|Hshin7	YOD1 deubiquitinase	protein-coding	2.95423853183271	3.29346140256289	3.4811466731837	3.05496658194902	3.04622171786402	3.49719130737093	3.14306141941754	3.21322375009536	0.0920028810332968	0.875555905471392	0.9532510799291
Merged-chr17-48931932-4	chr17	48931833	48932033	+	864.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027452)	promoter-TSS (NM_027452)	-649.0	NM_027452	70530.0	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	4.19005962325174	4.01661166282276	4.3930119069377	4.33169901252012	3.64501368505023	4.17649281748784	4.08190623280543	3.94786157523253	-0.728750237009485	0.101024195661496	0.348864798320861
Merged-chr11-82036077-3	chr11	82035961	82036161	+	683.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011333, intron 1 of 2)	intron (NM_011333, intron 1 of 2)	484.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	3.80517600870165	3.89327851914579	3.2649938500202	3.47373383774525	3.92702068871202	3.87572314071167	3.83723685751509	3.75327055917794	0.660057559526609	0.185584463093088	0.483549688674278
Merged-chr2-18998248-4	chr2	18998152	18998352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355149)	promoter-TSS (NM_001355149)	-67.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	7.2399457313374	7.18887432254813	6.98141533728628	7.75979298366743	7.07323407848692	6.74584897903376	7.39206890156458	6.86697056435526	-0.399707188679924	0.109904106264852	0.36613612186773
Merged-chr11-21549958-4	chr11	21549862	21550062	+	983.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21972.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	5.17750190431536	4.78774623360045	4.86004677007207	5.26484156978404	5.18095728137702	5.32036800208292	4.83725820986793	5.57319717482717	0.376195795499563	0.276484248233495	0.588504895079849
Merged-chr7-80065509-3	chr7	80065414	80065614	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045695, intron 2 of 2)	intron (NR_045695, intron 2 of 2)	9743.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	5.9242498731431	6.03465112413615	5.68698504339448	6.03947876788278	4.00849298111472	4.18665091346191	4.02770962956734	4.57946931310787	-3.69917625755391	1.27562065815408e-19	4.0354401256333e-17
Merged-chr19-43801639-4	chr19	43801535	43801735	+	975.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013806, intron 7 of 31)	intron (NM_013806, intron 7 of 31)	19327.0	NM_013806	12780.0	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	4.69802772469626	4.38634258545264	4.69879213961894	4.53096472930527	4.81051551774168	4.66904944630122	4.78481961004913	4.804743109528	0.416623733829611	0.223137798998401	0.531181190686666
Merged-chr14-51844107-4	chr14	51843993	51844193	+	842.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9675.0	NM_053111	93719.0	Mm.221324	NM_053111	ENSMUSG00000062148	Ear6	-	eosinophil-associated, ribonuclease A family, member 6	protein-coding	3.83951118884304	4.29847620085544	4.53697818188544	4.50447811293665	3.64375502178749	3.84123120010146	4.08303923289323	4.05034395311369	-1.10084980069104	0.0189939942998913	0.123596060446261
Merged-chr15-82118898-4	chr15	82118811	82119011	+	863.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028897, intron 26 of 30)	RLTR22_Mur|LTR|ERVK	-9011.0	NM_172428	76457.0	Mm.440373	NM_172428	ENSMUSG00000068114	Ccdc134	2310042L06Rik|AW208859	coiled-coil domain containing 134	protein-coding	3.55617998450778	4.13830615924532	3.97314834444531	3.95805444730671	4.00695298220274	4.19733020848049	4.58213141748082	4.0209521464676	0.758415680749323	0.103336133081348	0.353232608970717
Merged-chr1-191069439-3	chr1	191069341	191069541	+	917.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 2 of 5)	intron (NM_198654, intron 2 of 5)	6420.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	3.06728479841327	3.30926329877609	3.20292910944432	3.13401460028261	3.74576790419947	3.60802635400916	3.31339631716121	3.48908036644931	1.30689118190921	0.0132733573484437	0.0964065615004971
Merged-chr17-84352744-4	chr17	84352630	84352830	+	898.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	113478.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	4.12374488322999	4.12461333407664	3.96936171140465	4.1381559054647	4.07204105939451	4.55655657909373	4.36728150552046	4.34473167331147	0.59787920635507	0.139993281748981	0.416057695265582
Merged-chr18-75503553-4	chr18	75503474	75503674	+	991.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-11071.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	6.00719141919173	5.74138687671046	6.28188383212598	6.15619110287058	5.33630729115204	5.39624566670672	5.68129315461841	5.8291902279739	-0.807825618323099	0.00416674121862678	0.0413935063783162
Merged-chr6-50566606-4	chr6	50566488	50566688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015581)	promoter-TSS (NR_015581)	-55.0	NR_027892	73183.0	Mm.430720	NR_015581	ENSMUSG00000085776	5430402O13Rik	3110047M22Rik	RIKEN cDNA 5430402O13 gene	ncRNA	8.4093543100645	8.60060769156238	8.41070411280683	8.32134570791329	8.46008399598817	8.74229143690002	8.66976279868113	8.41574607089139	0.175526162235738	0.282233578177765	0.594440120169112
Merged-chr18-67825458-4	chr18	67825351	67825551	+	807.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027556, intron 14 of 45)	MIRb|SINE|MIR	25344.0	NM_027556	70799.0	Mm.30857	NM_027556	ENSMUSG00000024542	Cep192	4631422C13Rik|D430014P18Rik	centrosomal protein 192	protein-coding	3.80772695591841	3.51769508801737	4.17375494608763	3.89892143962042	3.92907322329611	3.92879451371066	3.89334120905315	3.90762848902794	0.129652212871625	0.779061653160867	0.913829539187166
Merged-chr12-12148051-4	chr12	12147944	12148144	+	785.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114095.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	3.77211003146499	4.02573071950297	4.55113509104996	4.32573892041996	4.02715223406493	4.27735186331775	4.0857322511008	4.36417525372987	-0.0345289468201702	0.938794652684239	0.977799606257435
Merged-chr17-73031322-3	chr17	73031240	73031440	+	933.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-76645.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	3.2148431135945	3.0450284047038	3.05513785661761	2.84544538539284	4.08392834835495	4.34254207156479	4.03198926948598	4.16854755435181	3.91047992864955	1.72919713866995e-12	1.77155518870857e-10
Merged-chr4-131837173-8	chr4	131837106	131837306	+	817.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083119, intron 1 of 30)	CpG	1072.0	NM_011214	19273.0	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	3.89884149187799	4.00584305616889	3.5185309028347	3.62384353203577	3.80042372981133	3.69762534131074	3.97230607012775	3.84910510463199	0.181357414374815	0.70012128618099	0.879044875360757
Merged-chr13-113592930-4	chr13	113592829	113593029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_130796, exon 2 of 2)	3' UTR (NM_130796, exon 2 of 2)	25635.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	5.49035900817148	5.1326268289789	5.56834397997423	5.70757900476867	5.23457813164435	5.26749936112868	5.35381184043427	5.12188032079256	-0.458903352223613	0.128517670079301	0.398908042847312
Merged-chr16-4722327-4	chr16	4722245	4722445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2989.0	NM_001290761	67824.0	Mm.28451	NM_026393	ENSMUSG00000063445	Nmral1	1110025F24Rik|AI256624	NmrA-like family domain containing 1	protein-coding	6.10597516304257	5.81768228552148	6.08665351796839	6.50830460010896	5.97987822803608	6.01464238961343	5.85656795056626	6.10268713384192	-0.285132627727672	0.285853423441151	0.597485194899797
Merged-chr17-34894363-4	chr17	34894287	34894487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198886)	promoter-TSS (NM_198886)	-172.0	NM_198886	193736.0	Mm.161119	NM_198886	ENSMUSG00000049823	Zbtb12	BC020447|Bat-9|Bat9|G10|NG35	zinc finger and BTB domain containing 12	protein-coding	7.29458120474262	7.06993534475286	6.55746063906244	7.09978750751386	7.3581517540614	7.66026163399988	7.02645959940903	6.95526509240427	0.335074745460356	0.174408873984476	0.468869178582961
Merged-chr11-97022025-4	chr11	97021974	97022174	+	863.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_133649, exon 1 of 2)	non-coding (NR_133649, exon 1 of 2)	4344.0	NR_133649	100127433.0	Mm.156282	NR_133649	ENSMUSG00000087067	Gm11532	Sp6os	predicted gene 11532	ncRNA	3.9271329771398	3.72653489758738	3.78369128879188	3.72889239936982	3.64655407843298	3.95403001088821	3.71685338264512	3.67583805947701	-0.119917946995657	0.793218265941569	0.91989642620941
Merged-chr9-109875435-4	chr9	109875325	109875525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007658)	promoter-TSS (NM_007658)	-154.0	NM_007658	12530.0	Mm.307103	NM_007658	ENSMUSG00000032477	Cdc25a	D9Ertd393e	cell division cycle 25A	protein-coding	7.96191128270491	7.88784778768822	7.59129003965672	7.73653468024805	8.22965292904563	8.27347723589389	8.31173894567626	8.12759730900665	0.562522024375296	0.000739338312245013	0.0105694640946551
Merged-chr10-71369619-4	chr10	71369503	71369703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 3 of 5)	intron (NM_027184, intron 3 of 5)	21840.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	7.16756062227063	6.89582419109292	7.67646216434935	7.4949486830258	6.47310597450907	6.60745263736808	6.93102498100887	6.85364379208382	-0.858438754719003	0.000407658360369767	0.00654413947513748
Merged-chr17-65765161-4	chr17	65765054	65765254	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	Lx5|LINE|L1	7598.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	5.45489955524433	4.90010587553917	5.1312070807916	5.11578003616324	5.46466039419473	5.01044216100956	5.4021773862649	5.34349410920185	0.304161869015806	0.332064151690561	0.643114462430911
Merged-chr5-23132455-3	chr5	23132355	23132555	+	854.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029990, intron 2 of 2)	RLTR11B|LTR|ERVK	301898.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	4.61562451915007	4.34275572149578	4.03017548199135	4.4082191156156	3.67526381149926	4.44391507126787	4.20782490558885	4.07971943877665	-0.605121493880411	0.186209264095495	0.484113766444254
Merged-chr13-37333546-4	chr13	37333402	37333602	+	912.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11843.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	4.16079312840403	4.2329381374287	4.25407636797206	4.39944873715596	4.13146257900516	4.23679945943078	4.40084063854323	4.33782483094684	-0.00202386355976241	0.995879285389309	0.998543856884531
Merged-chr19-32186644-4	chr19	32186549	32186749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	24364.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	7.0451550713661	7.38517272795099	7.13544265634779	6.93591528543405	6.66270488218583	6.57522888282145	6.34370150756896	6.20463293668334	-0.941629306959695	3.64318429277564e-05	0.000857732903358229
Merged-chr14-61801270-2	chr14	61801170	61801370	+	986.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118897.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	3.5204149400337	3.28781686600435	3.31324644452613	3.00816416165429	3.25186105307376	3.48386408097088	3.05626627811209	3.19370471817839	-0.116442601038776	0.839025651987929	0.938856878340637
Merged-chr13-65019009-4	chr13	65018902	65019102	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14056.0	NM_001083890	238683.0	Mm.295543	NM_001083890	ENSMUSG00000074849	Spata31d1c	4932441B19Rik|Fam75d1c	spermatogenesis associated 31 subfamily D, member 1C	protein-coding	4.5899937478273	4.42878362387639	4.70331978687108	4.97795181955675	4.67924080389065	4.19244590506897	4.60762576424954	4.22844411263506	-0.547550085682656	0.175151354097512	0.469871414212748
Merged-chr8-3926833-3	chr8	3926734	3926934	+	960.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026972)	promoter-TSS (NM_026972)	7.0	NM_001037800	69165.0	Mm.175163	NM_026972	ENSMUSG00000065987	Cd209b	1810030I22Rik|DC-SIGNR1|OtB7|SIGNR1|mSIGNR1	CD209b antigen	protein-coding	4.55045234991485	4.34589674229807	4.40064646758658	4.88551333331024	3.91181425626304	3.72193131025938	4.16476656943554	3.86126327137375	-1.66076362236497	0.000214661931868579	0.00386038950188823
Merged-chr5-20967997-4	chr5	20967876	20968076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16154.0	NM_001080977	242860.0	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	5.2347740412832	5.78940159805596	5.56613742977937	6.07938252660316	5.38909422209213	5.23411586508967	5.48435852438437	5.42260955627997	-0.582058476831226	0.0634353705504808	0.267317875816274
Merged-chr13-68582608-1	chr13	68582508	68582708	+	1000.0	f1_balb.idr	promoter-TSS (NR_131892)	promoter-TSS (NR_131892)	398.0	NR_138478	69577.0	Mm.23670	NM_027123	ENSMUSG00000021532	Fastkd3	2310010B21Rik|AW048587	FAST kinase domains 3	protein-coding	4.30103841278812	4.26077200945458	4.48762970052108	4.70437938245997	4.71589025173087	4.85865273547419	4.50954475177875	4.85732548690963	0.585948234760809	0.121683798386377	0.386356101585507
Merged-chr2-164972939-4	chr2	164972848	164973048	+	866.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020333, intron 1 of 25)	L2b|LINE|L2	4960.0	NM_020333	57138.0	Mm.252987	NM_020333	ENSMUSG00000017740	Slc12a5	KCC2|mKIAA1176	solute carrier family 12, member 5	protein-coding	3.42485063273279	3.48577730525245	3.72141810411441	3.8749730595703	3.87383839219667	4.08512023416916	3.85467528681039	3.71932189807589	0.677405589092397	0.168603500770407	0.460861267857296
Merged-chr10-61694993-1	chr10	61694893	61695093	+	568.5	f0_c57.idr	promoter-TSS (NM_001272090)	promoter-TSS (NM_001272090)	-521.0	NM_001272090	71767.0	Mm.71514	NM_027912	ENSMUSG00000020087	Tysnd1	1300019N10Rik	trypsin domain containing 1	protein-coding	3.63763045380035	3.70000698914833	3.63810363060309	3.56888636763927	4.13266185839904	3.86866071186261	4.01475944590369	3.79867848218979	0.976783148880198	0.0284354956656767	0.161708919623108
Merged-chr11-117782311-4	chr11	117782221	117782421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195088)	promoter-TSS (NM_001195088)	24.0	NM_001195089	217356.0	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	6.04036086617653	6.44437023202609	6.36086401942146	6.33430076298832	6.39260102452833	5.94498676851493	5.98780527189668	6.80934638508037	0.0463110120914362	0.867576778085903	0.950342374382525
Merged-chr9-22085478-4	chr9	22085372	22085572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253898)	promoter-TSS (NM_001253898)	-45.0	NM_001253897	26940.0	Mm.425568	NM_012029	ENSMUSG00000066839	Ecsit	Sitpec	ECSIT signalling integrator	protein-coding	8.09340624955432	7.93059324348725	7.73927639976832	8.15155631229281	8.10238505202554	8.11790343602038	8.10560849921933	8.06384813041149	0.130192102350317	0.441311545329233	0.728396857622944
Merged-chr12-100520464-4	chr12	100520346	100520546	+	887.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 1 of 19)	CpG	376.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	4.08660074182406	4.45398870233812	4.48683378591051	4.59629880155307	4.20300884376394	4.31331908454209	4.16954040171772	4.18483543272415	-0.520931910816555	0.192244916964576	0.491824448203475
Merged-chr15-79354818-4	chr15	79354712	79354912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304832, intron 1 of 2)	intron (NM_001304832, intron 1 of 2)	6410.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	6.80198428667056	7.14346167539479	6.99361371190355	6.80864737523939	7.51801293164219	7.17043462456332	6.8804554779626	6.8273632730604	0.273639589479582	0.240366082742694	0.550870712287303
Merged-chr16-70333278-2	chr16	70333187	70333387	+	618.0	f0_c57.idr|f1_balb.idr	intron (NM_028803, intron 1 of 15)	AT_rich|Low_complexity|Low_complexity	19338.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	2.85272184040675	2.63999772755274	2.78092178905216	2.62310299484527	3.51910084793361	3.33647415914217	3.20571588083571	2.9853265806189	2.42591069516895	8.98600070014939e-05	0.00185664599081548
Merged-chr8-3648520-4	chr8	3648416	3648616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7254.0	NM_001204959	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	5.732020828967	5.46463833686516	6.08884505978486	6.16470559477961	5.96121156839061	5.83058918707764	5.72929011726403	5.89698385624577	-0.0727728211308366	0.796769911804995	0.92135824726854
Merged-chr1-171247210-4	chr1	171247114	171247314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153064)	promoter-TSS (NM_153064)	-92.0	NM_153064	226646.0	Mm.21669	NM_153064	ENSMUSG00000013593	Ndufs2	CI-49kD	NADH dehydrogenase (ubiquinone) Fe-S protein 2	protein-coding	7.41391572465756	7.50694216210534	7.17565093163051	7.10273079768236	7.78741940397336	7.76773116656499	7.65230618575021	7.59397850905413	0.534251337855436	0.00420995044036468	0.0417237625166691
Merged-chr4-49608964-4	chr4	49608841	49609041	+	799.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11065.0	NM_025944	67063.0	Mm.454013	NM_025944	ENSMUSG00000039611	Tmem246	2810432L12Rik|9330170P15Rik|AI835809	transmembrane protein 246	protein-coding	3.5326565794708	3.74218319516059	3.47697253481955	3.85248090960478	3.70028469170792	3.26457948798355	3.71967384477954	3.22366581515874	-0.518062900662913	0.347557643567017	0.655546119710951
Merged-chr10-88201151-4	chr10	88201063	88201263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027487)	promoter-TSS (NM_027487)	66.0	NM_027487	67282.0	Mm.208465	NM_026070	ENSMUSG00000020056	Washc3	2900091E11Rik|5730495F03Rik|Ccdc53	WASH complex subunit 3	protein-coding	6.54952110893339	6.71410451258801	6.64500960421126	6.60279968181733	6.56834171836812	6.64282165859131	6.50095648441315	6.57821965649656	-0.081496073261784	0.686999544519458	0.872022893505377
Merged-chr19-17277110-2	chr19	17276976	17277176	+	905.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	62429.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	2.46169249671361	2.3242461810821	2.37626908804366	2.0477820288806	3.34149586398109	2.87956267962605	2.81690740678837	3.39544242517227	6.42414512228415	1.51146548127699e-10	1.12536194029095e-08
Merged-chr5-110810184-4	chr5	110810105	110810305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009469)	promoter-TSS (NM_009469)	-124.0	NM_001347394	22241.0	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	8.75716065242537	8.87498733866102	8.55514018795768	8.52208020560205	8.94170120528933	9.01737528057118	9.03355616222791	8.72345677757826	0.314228421008868	0.0548764006458311	0.244724473502263
Merged-chr11-98972373-2	chr11	98972273	98972473	+	985.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361954, intron 6 of 7)	intron (NM_001361954, intron 6 of 7)	7501.0	NM_001361954	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	3.39247671234136	3.53755354658718	3.62653116199268	3.28714354233551	3.98188912480743	3.68965493475675	3.66360302971431	3.77551167418798	1.05743770695865	0.0287758564853392	0.162972365433638
Merged-chr5-34271923-2	chr5	34271823	34272023	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 1 of 12)	B3|SINE|B2	16401.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	3.00340746643692	3.10267653239995	3.00378264384707	2.82431520348662	2.87043260159713	3.23527653736774	2.7950488628669	3.28028698898068	0.315520324554681	0.607188476262477	0.829834769802161
Merged-chr6-145709993-4	chr6	145709842	145710042	+	878.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93979.0	NM_009449	22147.0	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	4.68174981240067	4.73989798698099	4.81939461778184	4.96471334030883	4.33197910675053	4.33484448627785	4.13620352901068	4.09541756773152	-1.33792029846537	0.000451720146955153	0.00710406282371208
Merged-chr19-6477189-3	chr19	6477096	6477296	+	721.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 9 of 22)	intron (NM_001205234, intron 9 of 22)	58458.0	NM_001205234	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	3.73449862705227	3.72958757451499	3.43994713246109	3.91574569392278	3.86193153062148	3.62062564533342	3.7200194794623	4.17390104522446	0.389142107755215	0.432524991590522	0.722556711801112
Merged-chr1-181316846-3	chr1	181316744	181316944	+	593.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35784.0	NM_001160212	72978.0	Mm.338083	NM_028408	ENSMUSG00000026514	Cnih3	2900075G08Rik|CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding	3.36834851764967	3.45366613092797	3.53843933850798	3.53494817835023	3.41059427728295	3.41979237759059	3.47083042563944	3.77654331292262	0.152655901307755	0.761305708870007	0.906512173824769
Merged-chr5-125189031-4	chr5	125188940	125189140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B4|LTR|ERVL	-9826.0	NM_001253904	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	6.1712230910548	5.94855000148037	5.90139747263415	6.21382903507623	5.9617561763774	5.73620902935915	5.69834591994473	6.16789433266283	-0.261675513953365	0.310379946208828	0.6225601620496
Merged-chr8-116993582-4	chr8	116993455	116993655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026572)	promoter-TSS (NM_026572)	-106.0	NM_026572	68133.0	Mm.258462	NM_026572	ENSMUSG00000034424	Gcsh	1100001L02Rik|5730591C18Rik	glycine cleavage system protein H (aminomethyl carrier)	protein-coding	8.77649683895276	8.81893804098911	8.77367125350103	9.02258729086345	8.84532044071975	8.94305814145261	9.24873922546357	9.08854073336426	0.225677616367452	0.163613958492615	0.453373353678186
Merged-chr9-63399268-4	chr9	63399166	63399366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027090)	promoter-TSS (NM_027090)	-22.0	NM_027090	69478.0	Mm.113942	NM_027090	ENSMUSG00000032403	2300009A05Rik	-	RIKEN cDNA 2300009A05 gene	protein-coding	7.45807616576389	7.5160811236914	7.48760073162367	7.54582010236424	7.49023254169434	7.66429410391778	7.31372781417805	7.38577265926883	-0.0479025763701009	0.785837604076564	0.916683898794896
Merged-chr6-122491757-4	chr6	122491637	122491837	+	832.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5432.0	NM_027664	108653.0	Mm.277939	NM_027664	ENSMUSG00000040649	Rimklb	4931417E21Rik|4933426K21Rik|AA097693|AI325948|AU015629|Naags	ribosomal modification protein rimK-like family member B	protein-coding	4.52614669883974	4.49878768368038	4.40276812058666	4.67041997176832	4.11638970974148	4.0638238700224	4.61764407141724	4.63678608908397	-0.353172774984929	0.384008850237848	0.685644380524807
Merged-chr13-113271444-4	chr13	113271388	113271588	+	917.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	61829.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	3.50965678615334	3.60785020458441	3.51013476191226	3.19729255424817	3.68332377655806	3.88549698158486	3.25333040963222	3.61587112121724	0.554893905158212	0.294633767233026	0.606767041413815
Merged-chr14-73552803-4	chr14	73552698	73552898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361638)	promoter-TSS (NM_001361638)	12.0	NM_001361638	20916.0	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik|A-SCS|SCS-betaA	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding	6.55654772888801	6.30507259721067	6.06812977569586	6.27597692840976	6.38761469088205	6.70144033010379	6.64257033080461	6.48904808931964	0.359937545654338	0.114654765860462	0.374533599886066
Merged-chr15-3234301-4	chr15	3234135	3234335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-36532.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	5.30254332222659	5.31947355631002	5.72217194603104	5.38408899884612	5.13197059041523	5.50878903907475	5.33737497854976	5.38955925336897	-0.175562809223817	0.551766300188572	0.799073691139046
Merged-chr16-91870393-4	chr16	91870282	91870482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001110275, exon 29 of 29)	3' UTR (NM_001110275, exon 29 of 29)	61248.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	7.32869242368691	7.78743291534227	7.2316770139756	7.33901341074458	7.7323022451759	7.65543989512887	7.25086915263066	7.24912709753044	0.0728142068053415	0.740742154710744	0.898040260084917
Merged-chr5-24750459-2	chr5	24750359	24750559	+	951.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153076)	TTS (NM_153076)	7384.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	3.37439125970871	3.33153979434696	3.21319487219912	3.04683994139257	3.45157678501875	3.20160658038491	3.01934985515168	3.02712602649881	-0.168883308575076	0.77284495302963	0.911052408089747
Merged-chr5-30839990-4	chr5	30839895	30840095	+	820.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-21812.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	4.27275232722531	4.73738367098604	4.36350892814553	4.41889422838114	4.02481986915989	4.40138662386742	4.38621444203715	4.4034940162511	-0.374121655225746	0.35057403802374	0.658165288155673
Merged-chr14-50820248-3	chr14	50820154	50820354	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009632, intron 13 of 15)	intron (NM_009632, intron 13 of 15)	12338.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	3.78534542228058	3.44730188296274	3.41718405435725	2.93866568484302	4.92703941166759	4.5966827078345	4.95780197223217	5.1809035641751	4.36260490454147	1.96829993217541e-18	5.30687957849673e-16
Merged-chr6-90428540-4	chr6	90428521	90428721	+	905.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173775)	promoter-TSS (NM_173775)	-141.0	NM_173775	243538.0	Mm.386876	NM_173775	ENSMUSG00000048794	Cfap100	AW048498|C030041G11Rik|C230069K22Rik|Ccdc37	cilia and flagella associated protein 100	protein-coding	3.56862272345044	3.92827114508472	3.39854228697474	3.69560115323065	3.2340759674449	3.31542553794917	3.50102224974215	3.66928474076881	-0.754711231244375	0.158288651698211	0.44515321766997
Merged-chr19-34515935-4	chr19	34515836	34516036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	11538.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	8.66157006389822	8.82064849790705	8.75584796826361	8.77375459693393	8.47648218119846	8.48798953229775	8.57428307633772	8.48367754528513	-0.314494573218632	0.0275688709169578	0.158405284387967
Merged-chr19-5424945-4	chr19	5424860	5425060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256515)	promoter-TSS (NM_001256515)	19.0	NM_024176	66556.0	Mm.275446	NM_024176	ENSMUSG00000024914	Drap1	2310074H19Rik|NC2-alpha	Dr1 associated protein 1 (negative cofactor 2 alpha)	protein-coding	7.51759801897426	7.49358470984973	7.03379916610592	7.12849599214815	7.67863759848504	7.62225237956181	7.33039404497736	7.33127846623812	0.265210751795319	0.203115073348882	0.505790925199415
Merged-chr19-25138364-4	chr19	25138240	25138440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 23 of 47)	B1_Mur2|SINE|Alu	-98635.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	7.10105354013526	6.8801556196307	7.00354383027495	7.09871953695004	7.11748463947824	7.34830527531007	7.57430198276403	7.01137074314228	0.342802988482771	0.0984712079073454	0.343994301133918
Merged-chr2-59397704-4	chr2	59397614	59397814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-11032.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	5.6153038882593	5.59448112328054	5.45120082787832	5.62575261424575	5.82738140484241	5.43989333291703	5.4241135812044	5.66283405992974	0.0580843480560816	0.832140621699748	0.935732650076196
Merged-chr18-4239669-4	chr18	4239566	4239766	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73834.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	4.79663611449974	4.72387786498444	4.65742883579084	4.44481682784621	4.53940286853069	4.54341119731782	4.20289113392924	4.36486504154656	-0.509462929083944	0.177158998656073	0.472420088731847
Merged-chr8-13338687-4	chr8	13338585	13338785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291766)	promoter-TSS (NM_001291766)	-66.0	NM_001291765	21781.0	Mm.925	NM_009361	ENSMUSG00000038482	Tfdp1	Dp1|Drtf1	transcription factor Dp 1	protein-coding	7.05580147254287	7.50020591481968	7.16611097957841	7.23237461242047	7.27246941109897	7.49579156914369	7.54051431691994	7.03934497526374	0.131788394468869	0.52516226943802	0.783229855070132
Merged-chr1-33813361-4	chr1	33813267	33813467	+	894.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359274, intron 2 of 13)	intron (NM_001359274, intron 2 of 13)	1228.0	NM_133817	98403.0	Mm.289103	NM_133817	ENSMUSG00000042197	Zfp451	4930515K21Rik|4933435G09Rik|AI596398|COASTER|Kiaa0576-hp|Znf451|mKIAA1702	zinc finger protein 451	protein-coding	3.89182648145221	4.17611457476159	4.10152050314676	4.24753196610411	4.55412106886563	4.01420031838878	4.17627727381011	4.23622754517024	0.377397913138371	0.375423107702709	0.678418883017368
Merged-chr2-29827812-4	chr2	29827707	29827907	+	845.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026615, intron 1 of 4)	intron (NM_026615, intron 1 of 4)	418.0	NM_026615	68205.0	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	3.69048780716291	4.00664276716954	3.80600045120301	3.75215868330008	4.32723123068574	3.92697677405373	3.94486481238969	4.22298298276125	0.834902473506567	0.0573630359343044	0.251217838846235
Merged-chr2-131530151-2	chr2	131530051	131530251	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32134.0	NM_013460	11550.0	Mm.389380	NM_013460	ENSMUSG00000027335	Adra1d	Adra-1|Adra1|Adra1a|Gpcr8|Spr8|[a]1d|alpha1D-AR	adrenergic receptor, alpha 1d	protein-coding	3.05868967156141	3.06105913505032	3.17491703089852	2.98457346242451	3.31601255234404	3.03922872717691	2.98714464137613	3.05755749630685	0.19692075015892	0.731017358349076	0.893394535729008
Merged-chr2-84467619-3	chr2	84467511	84467711	+	988.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355271, intron 2 of 8)	MLT1B|LTR|ERVL-MaLR	6563.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	4.64351620376318	4.56872079331122	4.40007101798167	4.88847945879527	4.20724432620984	4.43602801342225	4.69346445211118	4.25563341486711	-0.55468756021717	0.158316879458095	0.445153637183645
Merged-chr12-76194738-4	chr12	76194664	76194864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-17505.0	NR_104386	13983.0	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	5.63560179909572	6.22578372019855	5.81221251379801	5.99120970053428	5.45879720789218	5.64262625520351	5.37430334585872	5.87638863670985	-0.568154758731014	0.0464358299431634	0.221399406265128
Merged-chr2-37484368-4	chr2	37484269	37484469	+	914.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033960, intron 6 of 18)	MTC|LTR|ERVL-MaLR	32115.0	NM_001033960	227800.0	Mm.383192	NM_146121	ENSMUSG00000035437	Rabgap1	Gapcena|mKIAA4104	RAB GTPase activating protein 1	protein-coding	4.4198572999364	4.31263868820945	4.37628991677646	4.21623927558534	4.70695555555216	4.5941955950076	4.35682379341284	4.79132003572061	0.689584544392296	0.0605079094260658	0.259936778625019
Merged-chr7-82867843-4	chr7	82867799	82867999	+	866.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175366, exon 1 of 2)	exon (NM_175366, exon 1 of 2)	566.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	4.11226285405285	3.77820769174823	3.83014578253437	3.82517205604548	3.8991019007003	3.89625816157028	4.09411839084947	3.87958755152392	0.161708150758648	0.711156540563437	0.884320878404725
Merged-chr9-109055628-3	chr9	109055478	109055678	+	895.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026381, intron 1 of 3)	intron (NM_026381, intron 1 of 3)	712.0	NM_026381	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	3.80245824970025	4.01194081088032	3.57687179587757	3.13343053371287	4.10217286036989	3.925733941279	3.83727282192349	3.99327793177661	0.865501526540308	0.101353788868183	0.349327869353383
Merged-chr12-103341368-4	chr12	103341251	103341451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	14650.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	8.27356024800228	8.32300986580938	8.19940420670722	8.11248055322821	8.23463169940648	8.21755875488952	8.38908635331728	8.08802283296387	0.0147313134474576	0.926528863905104	0.973020473242623
Merged-chr1-144000510-10	chr1	144000405	144000605	+	921.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009061, exon 5 of 5)	3' UTR (NM_009061, exon 5 of 5)	3644.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	3.9977846931095	4.52958309723514	4.35836647250153	4.39727447197484	4.45026795612822	4.77300087873572	4.42513038017478	4.60048909292896	0.505200754420315	0.194548739956	0.494939721660797
Merged-chr18-10532520-4	chr18	10532439	10532639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083628, intron 18 of 32)	intron (NM_001083628, intron 18 of 32)	77813.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	5.20967069284893	5.22000172327989	5.14412720564528	5.4890519776026	5.36420306436601	5.38513734600999	5.47206310152346	5.30081628362612	0.158434193739455	0.587387345714499	0.819154464745539
Merged-chr13-37873687-4	chr13	37873495	37873695	+	980.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	-14839.0	NR_033218	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.80705049015591	4.6866762512917	4.69899119177545	4.79894595027138	4.8102966388548	4.71211385956816	4.47396695388685	4.39917947202147	-0.283281313374315	0.423503063279316	0.715427187401411
Merged-chr15-76351718-4	chr15	76351623	76351823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025340)	promoter-TSS (NM_025340)	429.0	NM_026859	68877.0	Mm.289680	NM_026859	ENSMUSG00000022553	Maf1	1110068E11Rik|AU042856	MAF1 homolog, negative regulator of RNA polymerase III	protein-coding	5.93807263772967	6.01173936683225	5.91610181133137	5.76487287087828	6.21339480719877	5.99647101432073	6.11726856494907	6.14435828419508	0.355702439130594	0.13298776627407	0.406105758986762
Merged-chr11-103027847-4	chr11	103027725	103027925	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008707)	promoter-TSS (NM_008707)	-718.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	5.42375759975638	5.60093715022082	5.13354395002711	5.34182827601035	5.47160279284104	5.94715796128285	5.39754945140409	5.33107172930238	0.292937997155307	0.335095176342504	0.645470341043074
Merged-chr11-75677991-4	chr11	75677845	75678045	+	722.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1314.0	NM_001277219	12928.0	Mm.280125	NM_133656	ENSMUSG00000017776	Crk	Crk-I|Crk-II|Crk-III|Crk3|CrkIII|Crko|c-Crk|p38	v-crk avian sarcoma virus CT10 oncogene homolog	protein-coding	3.58412815916922	3.54166839736368	3.41258283878104	3.19056228619012	3.59675909635585	3.70286202418965	3.67197183272038	3.78099117361827	0.847806019731956	0.0869716184125722	0.321652322622117
Merged-chr10-24638514-2	chr10	24638414	24638614	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008813, exon 25 of 25)	3' UTR (NM_008813, exon 25 of 25)	43072.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	4.05294936503122	3.96682224782163	4.0072774292377	4.6183983115165	3.81677335952236	3.54134689298911	3.78850774748068	3.85528172808117	-1.24640936394872	0.011252141958011	0.0858155161715704
Merged-chr17-59179259-4	chr17	59179164	59179364	+	982.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEi|LINE|L1	-165942.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	5.10584575039167	5.34754721388791	5.46558930909619	5.09093467388641	5.05765376447506	5.44239737154386	5.01152576417868	5.46172294494096	-0.00198461464595553	0.994981956466512	0.998190746524986
Merged-chr12-76536924-4	chr12	76536788	76536988	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	3328.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	3.59857983491855	4.02034312099574	4.16393554221455	3.4307197018743	4.31037800929315	4.20388508893805	3.86968709425692	3.77638854651871	0.627515574681052	0.216074957020827	0.522486426388804
Merged-chr6-134171046-4	chr6	134170934	134171134	+	813.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	135334.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	4.29651277360379	3.95981825695154	3.76432862202412	3.94308409340374	4.46189872723789	3.94422368441791	4.0640418551117	4.12533257977241	0.451323450688553	0.309893866071859	0.622047371258887
Merged-chr8-83757096-4	chr8	83756992	83757192	+	856.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15781.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	3.99572927622209	3.83875877434743	3.72458806913817	3.76063886692478	4.22920331168199	4.34787774212791	4.15988783745498	4.04204714396866	0.99317919185205	0.0174918809923371	0.116862642871557
Merged-chr14-70168111-4	chr14	70168021	70168221	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145978, intron 6 of 9)	intron (NM_145978, intron 6 of 9)	-8619.0	NM_001004155	268759.0	Mm.12148	NM_001004155	ENSMUSG00000044551	9930012K11Rik	-	RIKEN cDNA 9930012K11 gene	protein-coding	5.04707806129519	4.53258558126289	4.52524378421059	4.82200821360819	4.89620623583377	4.91142300199598	4.75321406296334	5.01351608942041	0.292410197623198	0.398911449306203	0.696993422607056
Merged-chr2-136532201-3	chr2	136532098	136532298	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175667)	promoter-TSS (NM_175667)	-123.0	NM_175667	319196.0	Mm.477841	NM_175667	ENSMUSG00000074771	Ankef1	AV276460|Ankrd5	ankyrin repeat and EF-hand domain containing 1	protein-coding	5.46958069573485	5.15353148445558	5.96533195913271	5.94835741332191	3.95187457371433	4.36987121901296	4.21096877271837	4.16476200491345	-3.30071839552237	8.22342231589467e-15	1.2921301921039e-12
Merged-chr10-121365999-4	chr10	121365908	121366108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	intron (NM_029364, intron 1 of 13)	918.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	6.98118554706571	7.09979055497598	7.65479145539591	7.22923584035799	8.54388566078359	8.64928407488766	8.56181063649512	8.5409663014124	1.6909252305064	7.6406322312958e-19	2.22890394094838e-16
Merged-chr17-10824769-4	chr17	10824677	10824877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 1 of 4)	intron (NM_027032, intron 1 of 4)	15414.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	5.65997373275767	5.41629554925993	5.48059156903481	5.97679723116788	5.01172070490891	5.07890525402883	5.45299874690615	5.55714622536098	-0.660550040317398	0.0385898470548989	0.197128371144011
Merged-chr18-83815820-4	chr18	83815728	83815928	+	919.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	270734.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	4.16583266029273	3.82435154356351	4.2535316517186	4.27663682507822	4.42773585268377	4.04105352730574	4.19189814241594	3.86110390107823	0.0289841288761578	0.948014317659761	0.981359015857754
Merged-chr3-8928965-4	chr3	8928866	8929066	+	859.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001025261, exon 8 of 8)	3' UTR (NM_001025261, exon 8 of 8)	-5109.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	3.93141391018301	3.81194137102769	3.78845530844641	3.77757873654067	3.88692002472889	3.48965497560483	3.55539473723674	3.9739415353852	-0.221371910761762	0.642983668503206	0.849459897971419
Merged-chr19-24417848-4	chr19	24417737	24417937	+	988.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008846, intron 3 of 14)	intron (NM_008846, intron 3 of 14)	59637.0	NM_026520	68034.0	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|Gm9849	family with sequence similarity 122, member A	protein-coding	5.09555983323976	5.00017266750941	5.36535906652148	5.42547793987768	5.86638967158144	5.62797732501759	5.60876581235254	5.65768286706065	0.780290253006231	0.00726878080396718	0.0625616141288488
Merged-chr6-123260381-3	chr6	123260303	123260503	+	957.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1704.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	4.29481637442599	4.1313715289594	3.92718432178489	3.92704924732398	3.55847810316125	3.59569504548755	3.70677003249087	3.541235406655	-1.42168636630006	0.00303631639709484	0.0322859224423085
Merged-chr7-59228658-4	chr7	59228557	59228757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173010)	promoter-TSS (NM_173010)	-93.0	NM_001033962	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	8.85353598240016	8.81734408061269	8.941128139889	8.97699993187888	8.66746705247877	8.79378687124855	9.06681384583826	8.61993843228882	-0.128140958813578	0.430101086859801	0.720740306563559
Merged-chr14-64637589-4	chr14	64637497	64637697	+	969.4874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14934.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	4.78576359493652	5.50714805212121	5.45006127506172	6.02756054996706	5.05277856988306	4.92674928002964	5.30917244224708	5.55076668230746	-0.530804023025154	0.167319645897949	0.458928175229089
Merged-chr19-12464882-3	chr19	12464784	12464984	+	880.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010821, exon 2 of 2)	3' UTR (NM_010821, exon 2 of 2)	4105.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	4.05956500045819	4.36476951531035	3.95863897703059	3.90677818481511	4.04021283331186	4.41126651213117	3.99365263177438	4.15174676177085	0.192648679085023	0.654845177449641	0.855722872878428
Merged-chr2-166294329-4	chr2	166294222	166294422	+	976.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033467, intron 2 of 2)	intron (NR_033467, intron 2 of 2)	20414.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	4.4042052649097	4.6464327590688	3.91428405581617	4.12893681078909	4.54751920695651	4.20717392483296	4.46287841124434	4.13047605962313	0.131097055920949	0.762631271712756	0.907011913026374
Merged-chr17-86967881-3	chr17	86967790	86967990	+	945.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	4779.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	3.77714864270902	3.6718758943809	3.96108873248904	3.5791189979147	3.4687851335822	3.84724158061433	3.76152677887932	3.44022725180844	-0.340472595234217	0.49152658525598	0.763061522615821
Merged-chr8-70906134-5	chr8	70906043	70906243	+	864.6742550000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173013, intron 1 of 6)	CpG	169.0	NM_173013	270058.0	Mm.248559	NM_173013	ENSMUSG00000019261	Map1s	6430517J16Rik|Bpy2ip1|Map8|Mtap1s|VCY2IP1	microtubule-associated protein 1S	protein-coding	3.44375563286223	3.46961170561742	3.60810901062187	3.29558390848707	3.99047312273855	3.43646311415709	3.31110178235142	3.60600167043425	0.555903035155319	0.297298744957233	0.60941334041274
Merged-chr12-99739150-4	chr12	99739052	99739252	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030172, intron 5 of 5)	intron (NM_030172, intron 5 of 5)	-111178.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	5.10780194994722	5.24729110022746	5.25526734206772	4.89988085653858	6.11095592900733	6.07186924050814	5.92858356631917	6.01383084403384	1.56491513056865	4.03020959014004e-09	2.30785429136426e-07
Merged-chr16-76053321-1	chr16	76053221	76053421	+	705.0	f0_balb.idr	Intergenic	L2c|LINE|L2	52537.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	3.25827107616102	3.51297848721914	3.37387941310343	3.32763362508652	3.47707801427212	3.10101834739237	3.46511301475853	3.2570707069283	-0.104594927458579	0.846155562200517	0.941875968043083
Merged-chr14-20845890-4	chr14	20845793	20845993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9231.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	5.67360429636397	6.23469376133655	5.87620144457283	5.96252343121667	5.77611738657631	5.82483007939135	6.1885373683677	5.74991165762104	-0.100678928761858	0.708678947232715	0.882983104345985
Merged-chr1-127204979-4	chr1	127204884	127205084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145128)	promoter-TSS (NM_145128)	-2.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	5.86596804534629	5.75755835181014	5.66170308110018	6.1722979188231	6.06825517761073	5.83964831539415	6.05301962988543	6.15706691610726	0.214279050327548	0.416539751036792	0.710584286504404
Merged-chr5-113649003-4	chr5	113648908	113649108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	1382.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	7.7718670623335	7.6787470808215	8.07369562999899	8.13971298404612	7.61153838439878	7.79981527459058	7.78938981809265	7.84448351710682	-0.230218977743734	0.217397485591159	0.524298150941693
Merged-chr11-74648160-4	chr11	74648065	74648265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1330.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	7.83329222734628	8.08685288463584	7.82709942897018	8.00998416885642	7.61612457069065	7.53588661252359	7.89696962415992	7.64425277672585	-0.350237117987683	0.0472825291185962	0.223845902236951
Merged-chr10-128213111-6	chr10	128213034	128213234	+	820.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1340.0	NM_025716	66701.0	Mm.29694	NM_025716	ENSMUSG00000051346	Spryd4	4633402N23Rik|AA114801	SPRY domain containing 4	protein-coding	3.43271795339857	3.82026961010906	3.61122642832217	3.52543389542085	3.67084111848301	3.93698273663789	3.54112433008941	3.86034749029367	0.470479830861685	0.330440040292862	0.641809469479239
Merged-chr13-100873589-5	chr13	100873473	100873673	+	754.179993	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40146.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	3.32493860391826	3.37902793543598	3.45025353003754	3.11293533852988	3.52147811260894	3.84115303670102	3.60273160499223	4.01753200640147	1.45710344450942	0.00439117550318393	0.0431175998263386
Merged-chr4-14863619-1	chr4	14863519	14863719	+	989.0	f0_balb.idr	promoter-TSS (NM_028264)	promoter-TSS (NM_028264)	-600.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	3.78181128915889	3.90643056583143	4.02934852599352	4.1721171997473	3.95271412760734	3.72479858596254	3.87098300579692	3.93387544184436	-0.321623307541706	0.472247300162175	0.750448530501952
Merged-chr12-44283546-3	chr12	44283429	44283629	+	972.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026164, exon 2 of 10)	exon (NM_026164, exon 2 of 10)	14375.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	4.22697201869033	4.30021497634727	4.46654633189448	4.42322068882899	3.71283589456797	4.16385934899898	4.02221267133246	3.93135479135662	-1.06213477084102	0.0126193324753078	0.0931195797491121
Merged-chr1-171410373-4	chr1	171410260	171410460	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305677)	promoter-TSS (NM_001305677)	-953.0	NM_001305678	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	5.56353754528438	5.39152729556181	4.98582447831713	5.40433651395537	5.12984187390623	5.27316733612602	5.38154288337452	5.25848984329585	-0.179186950154678	0.552699824932571	0.799868677982226
Merged-chr18-52563793-4	chr18	52563698	52563898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33931.0	NM_001286182	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	7.92601786491213	8.08601237556844	7.8336860999221	7.85059724604666	7.57148406595405	7.8518255265099	7.76555041206371	7.53473518874014	-0.317631298479439	0.0690834917005517	0.280988220328775
Merged-chr15-97949835-4	chr15	97949716	97949916	+	966.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14413.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	4.88568996835257	5.01056192929218	4.65179666233105	4.7830782435615	4.96182007774475	4.64968006274847	5.22894268191722	4.88322645318485	0.2262077552193	0.505807276092139	0.771666154513082
Merged-chr17-84340780-4	chr17	84340717	84340917	+	841.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	125391.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	3.65555234670811	3.56607201273557	3.89869534864613	3.46810026860313	3.60607620555325	3.4729056653552	3.64126100645526	3.98135322704168	0.128092576755316	0.797157281282254	0.921521740444505
Merged-chr17-21909690-4	chr17	21909589	21909789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001256493, exon 1 of 5)	5' UTR (NM_001256493, exon 1 of 5)	237.0	NM_001256493	70081.0	Mm.245648	NM_001256493	ENSMUSG00000078546	Zfp995	2210404O09Rik	zinc finger protein 995	protein-coding	6.45746277633903	6.21522418416778	6.25486163137776	6.02416569856027	6.62216143447681	6.61784817393439	6.69955543923908	6.89581093565455	0.707985430886868	0.00154676630022596	0.0191447703286999
Merged-chr5-17878652-3	chr5	17878527	17878727	+	925.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	10332.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	3.88378932017917	3.68929558737338	4.10685573885164	3.92197392426707	4.01969527382438	3.53755189784673	3.71489544337241	3.88206063664162	-0.273984970502302	0.56380861693847	0.806486928766928
Merged-chr18-31609846-5	chr18	31609654	31609854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026165, exon 1 of 8)	exon (NM_026165, exon 1 of 8)	176.0	NM_026165	67453.0	Mm.23896	NM_026165	ENSMUSG00000024259	Slc25a46	1200007B05Rik|AI325987	solute carrier family 25, member 46	protein-coding	6.22675697718761	5.96709576087087	6.76902484331693	5.95206244437066	5.77971380619235	6.59949778751094	6.09575750281423	6.41984136890582	-0.0165851322829364	0.957101979256886	0.984757116793997
Merged-chr19-6057897-4	chr19	6057870	6058070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160239)	promoter-TSS (NM_001160239)	3.0	NM_001190436	14109.0	Mm.329631	NM_007990	ENSMUSG00000038274	Fau	MNSFbeta	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)	protein-coding	6.98009519209231	6.87444245577308	6.4354830848173	6.40382500925413	6.77999863661422	7.03146713967792	6.73914287406742	6.58690892409238	0.146814634804747	0.539785472439027	0.792406302070178
Merged-chr15-98153068-4	chr15	98152964	98153164	+	924.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170711, intron 1 of 3)	intron (NM_001170711, intron 1 of 3)	-7362.0	NM_001170710	78541.0	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	4.56410182915919	4.26028383087742	4.41550456337004	4.01001414028923	4.28617431964936	3.94508514734107	4.47094013777864	4.09998551364877	-0.234332279219803	0.587544311078375	0.819278583121838
Merged-chr8-71592117-4	chr8	71592034	71592234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025396)	promoter-TSS (NM_025396)	-50.0	NM_025396	66171.0	Mm.282284	NM_025396	ENSMUSG00000031807	Pgls	1110030K05Rik|AI447866|Plgs	6-phosphogluconolactonase	protein-coding	7.76079968922283	7.60606853376265	7.61459216938928	7.66517005860605	7.91478404386394	7.70183838160063	7.55097222361798	7.50042980172834	0.0296421115426051	0.869621955992999	0.951054729822361
Merged-chr11-78710140-3	chr11	78710053	78710253	+	666.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12728.0	NM_008702	18099.0	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	3.23297921508198	3.13390335265338	3.29557447344191	3.38220707714724	3.72625435180841	3.46887276207395	3.64667808144971	3.29394272005008	0.94330160698216	0.0760118755008288	0.297838946738032
Merged-chr7-34812907-4	chr7	34812784	34812984	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175140)	promoter-TSS (NM_175140)	-173.0	NM_175140	68947.0	Mm.29380	NM_175140	ENSMUSG00000060402	Chst8	1500011J21Rik|AI426009	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	protein-coding	3.89094941314726	4.51206700667469	4.9016218615209	4.68615479579435	5.2316449573997	5.25850966560339	4.80885164283171	4.41504057496415	0.881983289642213	0.229364587331039	0.538312515221446
Merged-chr7-128238245-8	chr7	128238140	128238340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177001)	promoter-TSS (NM_177001)	-209.0	NM_177001	100043133.0	Mm.183647	NM_177001	ENSMUSG00000062944	9130023H24Rik	GLI4	RIKEN cDNA 9130023H24 gene	protein-coding	7.33916713127432	7.50812695536456	7.66816946312466	7.04046712744024	7.00487947252069	7.79730489881892	6.8016304540893	7.17343265404776	-0.210944843396886	0.421488001949296	0.714001052191097
Merged-chr12-102394633-4	chr12	102394535	102394735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 13 of 13)	intron (NM_011175, intron 13 of 13)	45178.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.89512034551987	5.28265151976206	5.73037110997809	6.34463079440751	5.6608514525306	5.62798416054722	5.70125519565393	6.07710406385222	-0.176182404954981	0.589878735959182	0.820608949476005
Merged-chr13-111807230-3	chr13	111807123	111807323	+	923.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	1770.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	4.21633753686094	4.32038468841245	4.65541929260718	4.45255810576103	4.59047013000036	4.18902274607389	4.05122307595267	4.39266285343592	-0.209053376729041	0.610921267420917	0.832066560416303
Merged-chr9-5833628-2	chr9	5833528	5833728	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-334858.0	NM_001357398	71785.0	Mm.390122	NM_027924	ENSMUSG00000032006	Pdgfd	1110003I09Rik	platelet-derived growth factor, D polypeptide	protein-coding	2.67942662991983	2.61983801285843	3.06985981798391	2.98631812613987	2.99425715112888	3.06159499251252	3.00089080386961	3.17568324657225	0.839743409342079	0.191541803049941	0.490934932097934
Merged-chr8-85081419-4	chr8	85081329	85081529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026399)	promoter-TSS (NM_026399)	466.0	NM_001001493	414077.0	Mm.35790	NM_001001493	ENSMUSG00000059355	Wdr83os	-	WD repeat domain 83 opposite strand	protein-coding	6.38814870499636	6.33157109259603	6.37135749718097	6.41782541275032	6.31962712332261	6.33301276723422	6.65448786017346	6.56646880138271	0.135874716397811	0.534344478723331	0.789138445360665
Merged-chr4-139598637-3	chr4	139598530	139598730	+	779.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	MLTR14|LTR|ERV1	23910.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	3.1675594740171	3.26061230919145	2.9703426910931	2.99593475406327	3.47159978800639	3.39846297359773	3.2721035207842	3.28319958564781	0.987764421230481	0.0686446833605453	0.27989115637969
Merged-chr10-81016851-4	chr10	81016764	81016964	+	836.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1939.0	NM_010319	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	4.14501918965328	3.97079284032334	3.75104890047916	3.79747884078852	3.90185123619506	3.98333824331522	3.84585397171687	4.30191357790347	0.271640959792239	0.543635585814495	0.794779661155749
Merged-chr4-128957379-4	chr4	128957267	128957467	+	917.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301841, intron 2 of 8)	intron (NM_001301841, intron 2 of 8)	5088.0	NM_172875	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	4.09079418190976	4.2822473169941	4.23348483487937	4.17314803950498	4.08740244874287	4.44710669308123	4.25853585891365	4.31760293963041	0.196927110962986	0.617421716070967	0.835534817449625
Merged-chr17-27012146-4	chr17	27012051	27012251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-5884.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	6.02736242548946	6.2271007381248	6.00728920979576	5.93999928302141	5.83921924394978	5.46526491628383	6.11674407742221	6.06532251849776	-0.242843385052579	0.360674413469574	0.665936747041206
Merged-chr13-99331694-3	chr13	99331576	99331776	+	998.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 6 of 9)	intron (NM_026873, intron 6 of 9)	13002.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	3.65490455773588	4.07272334443919	3.43375444050098	3.38142367997212	4.69707425864126	4.39372869636735	4.74241291975878	4.6714155498829	2.52149042213693	5.54413475171476e-08	2.51034330465843e-06
Merged-chr12-111915008-4	chr12	111914910	111915110	+	964.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6955.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	4.89865704416988	4.85906135013646	5.03163093445179	4.82106467475924	4.71048917344789	4.80595811930359	4.47363038621963	5.1187391809688	-0.212052254946332	0.541907574584482	0.793491992580874
Merged-chr4-136021793-4	chr4	136021695	136021895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013736)	promoter-TSS (NM_013736)	-146.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	8.12054986357215	8.24754658628073	7.73275798136359	7.64048142931175	8.30333274529727	8.25542800360595	7.98031201992064	8.09778135334696	0.272275749687205	0.17544840837536	0.470168956483268
Merged-chr1-173456532-4	chr1	173456447	173456647	+	868.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 5 of 8)	intron (NM_001013779, intron 5 of 8)	35943.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	4.36981688396315	4.59976004014015	4.0690739504306	4.40302384971294	4.869518790639	4.25090237805959	4.55582487308001	4.57436572028999	0.481846434409704	0.228404498503376	0.537286714307472
Merged-chr4-40285803-3	chr4	40285679	40285879	+	627.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6358.0	NM_001033305	230075.0	Mm.1103	NM_001033305	ENSMUSG00000071014	Ndufb6	CI-B17|Gm137	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	protein-coding	3.4739025190628	3.13918388307693	3.30251522643189	3.19340848249564	3.64613485476042	3.53511200457992	3.34973028960769	3.62373318152676	0.935911982442132	0.0689065812404719	0.280525139905945
Merged-chr6-149409547-2	chr6	149409447	149409647	+	894.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009753, exon 1 of 9)	exon (NM_009753, exon 1 of 9)	563.0	NM_009753	12121.0	Mm.177181	NM_009753	ENSMUSG00000003452	Bicd1	B830009D06Rik|bic-D 1	BICD cargo adaptor 1	protein-coding	2.98118540319428	2.88361665371894	3.30555806760916	2.90945141518969	2.92308344039892	2.81583047990745	2.97089656387432	3.09729550697215	-0.292408347641304	0.632166113508686	0.843729759303872
Merged-chr15-84133712-2	chr15	84133593	84133793	+	643.75	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-10518.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	3.16422673243564	3.5343126707927	3.58472576602461	3.46584159602224	3.30639007277998	3.41248741006827	3.80044550734976	3.63287262466743	0.33119244259671	0.533881626330559	0.789042708189764
Merged-chr5-107986372-4	chr5	107986257	107986457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	MamSINE1|SINE|tRNA	720.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	5.51265868647331	5.13532124251743	5.20614313872952	5.31454758874709	5.07588883046223	5.02191706851641	5.32926770245398	5.38005084812368	-0.169202094782385	0.576990465231981	0.813891082840518
Merged-chr9-35055796-4	chr9	35055675	35055875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-60953.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	6.07856459466485	5.99502993923859	6.29373047584653	6.46561137996113	6.02065598692859	6.12261382088757	6.34742875459472	5.89323930712799	-0.201282785323713	0.429043575760366	0.720012403024634
Merged-chr19-58983765-2	chr19	58983665	58983865	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175172, intron 14 of 14)	B4A|SINE|B4	-40093.0	NM_001327998	73442.0	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	3.27108847713939	2.99363020936179	3.10349444086607	2.57444462152941	3.47762582257286	3.02160968309582	3.0312052042384	3.04073111123572	0.599030537172656	0.366236229879106	0.670796309439317
Merged-chr8-46140079-3	chr8	46139972	46140172	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15926.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	4.05121144969034	3.80283060692319	3.65815098741356	3.96526448619896	3.73685725719909	3.65480852137229	3.58641381671253	4.13094381317285	-0.249189003478471	0.60403766029885	0.828350269166784
Merged-chr11-105424485-4	chr11	105424411	105424611	+	977.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039242, intron 4 of 5)	intron (NM_001039242, intron 4 of 5)	32224.0	NM_172568	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	5.2175947804139	4.94705647411024	4.42390311794064	4.47029417960447	5.14174128355753	5.47040184839455	5.01176576072882	4.56834010873813	0.559523218858771	0.167109467097268	0.458584488837368
Merged-chr15-102192557-4	chr15	102192457	102192657	+	981.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359128, intron 3 of 15)	L2|LINE|L2	-3514.0	NM_144942	246277.0	Mm.296382	NM_144942	ENSMUSG00000023044	Csad	Csd	cysteine sulfinic acid decarboxylase	protein-coding	4.73233252764362	5.22970969992041	4.81333594494715	5.2252895496458	4.76429172475108	5.06286918607439	5.00327834696605	4.81018500420859	-0.251578024042291	0.463723740250079	0.744976486222937
Merged-chr11-70667512-4	chr11	70667403	70667603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167669, intron 1 of 6)	intron (NM_001167669, intron 1 of 6)	1913.0	NM_172561	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	6.94768269642715	7.07829280276734	7.02463319436196	6.72276576870403	6.89516509299722	7.20113471126749	6.84720391582144	7.25344671085522	0.160244015571988	0.448576041910181	0.733856919708496
Merged-chr3-133585109-4	chr3	133585032	133585232	+	957.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-40742.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	4.18278581468639	4.50302669621816	4.81603926273927	4.52710204698911	4.44992221182949	4.98490653485447	4.53745003401836	4.5142717292927	0.234874556634984	0.548158467529507	0.797241506537612
Merged-chr6-120056340-4	chr6	120056236	120056436	+	828.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17681.0	NM_001185021	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	4.13540687288587	3.65202653250142	4.30035008482522	3.87237155964809	4.20879364299205	4.01773032477052	4.02749600337109	3.89313934305852	0.117802793966046	0.796186230231487	0.921052599307061
Merged-chr16-91761985-4	chr16	91761903	91762103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	32632.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	5.96907380342863	5.81892214873238	6.05142440807712	5.83162668482595	5.96464958849964	5.86493676847381	5.4632596506811	5.54650846129479	-0.287600803636482	0.285938745604216	0.597560353111998
Merged-chr4-149307822-4	chr4	149307703	149307903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290995)	promoter-TSS (NM_001290995)	-70.0	NM_001290995	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	7.62787135646779	7.66826610873724	7.585221068339	7.54525362347901	7.81099048169752	7.83211453709053	7.9292029787453	7.50637326577726	0.229878818325628	0.190207403995138	0.489311966784848
Merged-chr17-67348052-4	chr17	67347944	67348144	+	813.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	6415.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	4.19541537217837	3.9768418268755	3.97868199069174	3.60386734606619	4.14875315343918	4.05343344828633	3.81234453744478	3.52924235532422	-0.092532435348897	0.851841237992831	0.944148356884019
Merged-chr18-58555691-4	chr18	58555588	58555788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081072)	promoter-TSS (NM_001081072)	-552.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	6.27309489790458	6.56987657047808	6.52727852622928	6.60754474538003	5.92158021518665	6.03687545794324	5.95043955424318	6.11062182836749	-0.771814923177347	0.000760996758423821	0.0108165432832762
Merged-chr1-143929922-3	chr1	143929827	143930027	+	773.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74222.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	3.45256450145606	3.59543366015897	4.05726637208806	4.30883867129259	3.40942681598226	3.80699819204699	3.50270191102957	3.51367883078988	-1.04891142952644	0.0573911056269926	0.251294226797201
Merged-chr7-80575892-4	chr7	80575752	80575952	+	901.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-40733.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	3.40412694636757	3.81769103519979	3.46943336877277	3.62946731374779	3.87972984247911	3.82104794231355	3.68681717949259	4.10558315988688	0.844339061849971	0.0805540162090548	0.307869110811013
Merged-chr19-32952578-4	chr19	32952473	32952673	+	882.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	194996.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	4.3579616561857	4.54650876127581	4.12049963204875	4.10531365776857	4.50903146096423	4.53089065242002	4.46200095948615	4.3116998809522	0.402592085275994	0.300740862933515	0.612615171792683
Merged-chr6-52477644-4	chr6	52477561	52477761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14790.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	7.17325852307827	7.20390129206036	7.33614065615766	7.43797848229741	6.91019639710726	7.41864711178208	7.3777069269981	7.35108146199216	-0.0382125036510229	0.851730031221523	0.944100387750672
Merged-chr11-98551135-4	chr11	98551027	98551227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166494)	promoter-TSS (NM_001166494)	30.0	NM_001166494	69376.0	Mm.55996	NM_027061	ENSMUSG00000017195	Zpbp2	1700017D11Rik|2610022C02Rik|ZPBPL	zona pellucida binding protein 2	protein-coding	5.68578351417017	5.73417156095073	4.97366075283496	5.27305736004353	5.32255884329876	5.1148041928151	5.29380073013747	5.45989839448242	-0.255131299719444	0.431545819201849	0.721710551668303
Merged-chr8-19958086-3	chr8	19957987	19958187	+	792.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270553, intron 6 of 9)	RMER16_Mm|LTR|ERVK	228511.0	NM_001039553	626415.0	Mm.425517	NM_001039553	ENSMUSG00000096265	4930467E23Rik	TSAP	RIKEN cDNA 4930467E23 gene	protein-coding	4.53644812223781	4.53290548131554	4.60555878153573	4.71773188564926	3.4922337420131	3.86152658947272	3.84389713044882	3.52740070121257	-2.63509732359898	4.22333684821169e-08	1.96959985010068e-06
Merged-chr11-82924089-2	chr11	82923989	82924189	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178680, intron 9 of 19)	B2_Mm1t|SINE|B2	12836.0	NM_178680	217012.0	Mm.295205	NM_178680	ENSMUSG00000018845	Unc45b	AA445617|Cmya4|D230041A13Rik|Unc45	unc-45 myosin chaperone B	protein-coding	3.2140343584777	2.89455430081564	3.05654762710489	2.81689338185268	3.18073362763135	2.69446042842553	2.66068212031267	2.93760707028679	-0.458282690990876	0.498636894179863	0.767747590057983
Merged-chr7-145308424-4	chr7	145308327	145308527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145379, exon 3 of 3)	exon (NM_145379, exon 3 of 3)	-6408.0	NM_203490	211578.0	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	5.93493230590483	5.81715225088511	5.91296049195834	6.08385283015642	6.22699959966572	5.91664715574502	6.25891763834135	5.88533595353533	0.220026643340547	0.377908960677656	0.680578431132348
Merged-chr11-93861428-4	chr11	93861290	93861490	+	860.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013375, intron 12 of 13)	intron (NM_001013375, intron 12 of 13)	24376.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	4.0237292452838	4.39025869924507	4.44022472596999	4.49132972492025	3.72110046435252	3.67835307031222	3.67744371493694	4.02191164502703	-1.57819285496135	0.000592065003393784	0.00885162673315819
Merged-chr4-107315175-1	chr4	107315075	107315275	+	759.5	f0_c57.idr	intron (NM_001205156, intron 1 of 8)	L1MEc|LINE|L1	812.0	NM_001205156	230584.0	Mm.29118	NM_145550	ENSMUSG00000057375	Yipf1	C030002N13Rik	Yip1 domain family, member 1	protein-coding	2.835316990152	3.03108045199334	3.26274203232126	2.71307049810977	3.66268978821438	3.50006511690898	3.30912526137999	3.88245159990457	2.41882646345174	6.13812515951744e-05	0.00134558273926598
Merged-chr1-191110072-4	chr1	191109967	191110167	+	975.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11653.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	5.68670827489855	5.2299423166661	4.87026436914637	5.28221546736538	5.43900905149738	5.39260721875585	5.34603452684778	6.00779548383611	0.48323802487235	0.151466346382466	0.43514784747972
Merged-chr19-18647038-4	chr19	18646941	18647141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145497, intron 8 of 8)	PB1D10|SINE|Alu	15025.0	NM_145497	225994.0	Mm.211595	NM_145497	ENSMUSG00000037847	Nmrk1	AA408380|D630020N23Rik|Nrk1	nicotinamide riboside kinase 1	protein-coding	6.66896463242651	6.15492657036996	6.95792932869561	7.21688604601969	6.37825204172362	6.39338907263287	6.48022595340346	6.05325091514061	-0.698141839393824	0.0133762684086552	0.0969561516354041
Merged-chr7-24299541-4	chr7	24299460	24299660	+	999.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009561)	promoter-TSS (NM_009561)	-11.0	NM_009561	22719.0	Mm.12832	NM_009561	ENSMUSG00000050605	Zfp61	-	zinc finger protein 61	protein-coding	5.11345506192934	5.32232546695667	5.60880711355892	5.32212743895116	5.11788432706071	4.86229944713643	5.02089313087487	5.17634396888415	-0.551799721540877	0.0754101688523374	0.296537230470169
Merged-chr6-128872469-3	chr6	128872366	128872566	+	874.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254946, intron 2 of 2)	BGLII_B|LTR|ERVK	-15121.0	NM_001289706	93675.0	Mm.391513	NM_020257	ENSMUSG00000030365	Clec2i	Clr-g|Clrg|Dcl1|LCL-1|OCILrP2	C-type lectin domain family 2, member i	protein-coding	4.10950052553731	4.42916929328566	3.71321421502021	3.84024842797246	3.69813755997779	3.94616235984783	3.80880732125435	3.71123658963157	-0.72671563953093	0.13232064233977	0.405042403178192
Merged-chr9-71942649-2	chr9	71942549	71942749	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011544, intron 6 of 20)	Tigger7|DNA|TcMar-Tigger	-46553.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	3.24986766959487	3.03321430657068	3.30980524566649	3.29192717674499	3.44534066776858	3.53621004858809	3.40739751016518	3.41932760582165	0.786071919185805	0.132511325576756	0.405399451698957
Merged-chr13-21181012-4	chr13	21180920	21181120	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009054, intron 1 of 7)	CpG	1089.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	5.35348365398167	5.28692363805398	5.64367284950915	5.25550872066204	5.43516438958826	5.37336530913545	5.17191496587974	5.40842139056241	-0.0482605264897392	0.868214530460194	0.950650524261722
Merged-chr12-25097330-4	chr12	25097225	25097425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1233.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	5.7185362577297	5.92452058977918	5.82203882973544	6.11331247984836	6.02428417548467	5.84311001933292	5.86384595511255	6.33494780291571	0.179683132299476	0.495378049795678	0.76566738049176
Merged-chr6-100163943-4	chr6	100163864	100164064	+	954.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123394.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	4.8927821688943	4.70736268492501	4.99391505396936	5.29161381071934	4.64468717363295	4.79999482137473	4.55905690802679	4.7430367539067	-0.658125844696753	0.0628708490509944	0.265836055875058
Merged-chr18-46745963-4	chr18	46745842	46746042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009681, intron 1 of 5)	intron (NM_009681, intron 1 of 5)	4066.0	NM_009681	11777.0	Mm.312536	NM_009681	ENSMUSG00000024480	Ap3s1	-	adaptor-related protein complex 3, sigma 1 subunit	protein-coding	5.90679882157729	5.97689240678379	5.95200960114092	6.03795557628317	6.13169386952211	5.50076800963023	5.5478332009645	5.94776108897864	-0.235040131937476	0.392246474150589	0.691857527785958
Merged-chr15-88819470-4	chr15	88819339	88819539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145477)	promoter-TSS (NM_145477)	-121.0	NM_145477	223774.0	Mm.41512	NM_145477	ENSMUSG00000035845	Alg12	ECM39	asparagine-linked glycosylation 12 (alpha-1,6-mannosyltransferase)	protein-coding	8.90979706500316	9.21990293084792	9.084195800986	8.70771666316281	8.95346321290086	9.12653057339284	9.06689166079866	8.84349242827634	0.0127198089432886	0.940614697717493	0.978654793543509
Merged-chr4-34389398-4	chr4	34389305	34389505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-161210.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	6.50169271558977	6.30560797744939	6.33992913835461	6.300111089796	6.04016954900254	5.8474952041619	6.28997275379482	5.82836244537697	-0.521784581355674	0.0303006789314903	0.168353136028768
Merged-chr14-27562819-4	chr14	27562714	27562914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-54354.0	NM_177111	320234.0	Mm.247767	NM_177111	ENSMUSG00000046753	Ccdc66	E230015L20Rik	coiled-coil domain containing 66	protein-coding	6.18101496649719	6.03078741667303	6.62938241011475	5.8104104160395	6.01740659754063	6.35815421970402	6.40081537299512	6.23598933195834	0.110559693730166	0.688147780544309	0.872645510806949
Merged-chr14-20804482-1	chr14	20804382	20804582	+	571.0	f0_balb.idr	Intergenic	Intergenic	10243.0	NR_153779	102631887.0	Mm.122292	NR_153779	ENSMUSG00000114241	Gm30108	-	predicted gene, 30108	ncRNA	2.9808871194543	3.02003804129779	2.98127252922141	3.09913331186416	2.86917373901468	2.75876567339466	2.72026371380296	2.859293293041	-0.997343866835385	0.108294704784854	0.363192408916317
Merged-chr8-71680685-1	chr8	71680585	71680785	+	639.5	f1_c57bl6.idr	exon (NM_010589, exon 8 of 25)	exon (NM_010589, exon 8 of 25)	4302.0	NM_010589	16453.0	Mm.249645	NM_010589	ENSMUSG00000031805	Jak3	fae|wil	Janus kinase 3	protein-coding	2.12247752634158	2.21973310161363	2.1226143762969	2.18548184134089	2.5543838696851	2.59220580462814	2.47533191331971	2.71486811562371	2.51956381418395	0.00159840095973128	0.0196409592470429
Merged-chr12-30257800-1	chr12	30257700	30257900	+	599.0	f0_balb.idr	intron (NM_001324521, intron 8 of 15)	intron (NM_001324521, intron 8 of 15)	115575.0	NM_172951	268534.0	Mm.279765	NM_172951	ENSMUSG00000020672	Sntg2	2210008K22Rik|9530013L23|BB121248|G2syn|Syn5	syntrophin, gamma 2	protein-coding	3.05939932477248	3.06461267801845	2.89475808591415	2.91134793997574	2.55694336903593	2.58775409026468	2.62819921236032	2.7040057660737	-1.89642888728592	0.0062849646207059	0.0561564663744157
Merged-chr6-38965655-4	chr6	38965560	38965760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	MTEa|LTR|ERVL-MaLR	46674.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	5.29800145608808	5.69381905687448	5.39493051716618	5.95186173966654	5.44257627408548	5.50941184609321	5.64245863628372	5.78539099848209	-0.0630189123262606	0.834984330388377	0.937161709816312
Merged-chr10-125317570-4	chr10	125317467	125317667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 1 of 5)	intron (NM_001358496, intron 1 of 5)	-8751.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	7.32777185303118	7.12674645303285	7.77380841743071	8.15631049371414	7.25596080103512	7.18067935351029	7.86350255555148	7.52107771600949	-0.244529696361051	0.365219022555921	0.66992899717833
Merged-chr10-83910986-6	chr10	83910910	83911110	+	979.984131	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	188145.0	NM_001145198	69784.0	Mm.271188	NM_001145198	ENSMUSG00000087651	1500009L16Rik	2700050C19Rik|OCC-1	RIKEN cDNA 1500009L16 gene	protein-coding	3.30343228759822	3.42095637372752	3.80418181654747	3.41185295818459	3.52969891593123	3.48566642747665	3.7405910287981	4.01282564412551	0.667802247587308	0.197487790218208	0.498889061237808
Merged-chr17-43581358-5	chr17	43581305	43581505	+	818.34668	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	10104.0	NR_045445	73504.0	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	3.49056372744578	3.41486263653463	3.64614743724413	3.51989296399333	3.66117288193545	3.29325395427094	3.47759441244311	3.5428873183768	-0.0347296984971027	0.944952666592256	0.980220727146961
Merged-chr17-26502023-4	chr17	26501909	26502109	+	976.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	6463.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	5.92137395515425	6.10798838075034	5.20698893712497	5.47708051978209	5.78603937727598	5.80219092703223	5.21614034374029	4.83944118475001	-0.417839414117032	0.270482364871161	0.582320012375668
Merged-chr7-45016271-4	chr7	45016207	45016407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008422)	promoter-TSS (NM_001008422)	-58.0	NM_001008422	233208.0	Mm.28298	NM_001008422	ENSMUSG00000038406	Scaf1	AI480556|SR-A1	SR-related CTD-associated factor 1	protein-coding	8.36937759276635	8.62447772490871	8.31510980460113	7.98720024244955	8.65085408190063	8.79926529585583	8.60367453190688	8.58869891835861	0.40933422351462	0.0253236056640887	0.149846947174675
Merged-chr3-9984123-4	chr3	9984015	9984215	+	831.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28470.0	NM_001272097	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	3.21941028626757	3.50151564039368	3.35454221524173	3.55733286206149	3.51583049090835	3.90972502516562	3.5207065845285	3.95759599063246	0.981453448793182	0.0622005737901822	0.263895490362483
Merged-chr17-23706430-4	chr17	23706330	23706530	+	880.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19906.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	4.0564109881694	4.49288385373689	3.89633684016225	4.05974191116427	4.34746533057585	4.32626949645447	4.18153915968373	4.10402839016988	0.249698308030123	0.554778314713631	0.801044670619386
Merged-chr10-39731506-4	chr10	39731405	39731605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011264)	promoter-TSS (NM_011264)	502.0	NR_038037	327744.0	Mm.295265	NM_183198	ENSMUSG00000087177	E130307A14Rik	-	RIKEN cDNA E130307A14 gene	ncRNA	7.55860898569096	7.48863277584546	7.5232805718448	7.81440129313388	7.57474869413207	7.66295614835163	7.85955703678814	7.49939457339526	0.0545186019525217	0.769306042138142	0.909742530773464
Merged-chr9-45122522-4	chr9	45122457	45122657	+	924.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014761, intron 1 of 3)	intron (NM_001014761, intron 1 of 3)	4681.0	NM_001014761	72821.0	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	4.35866138264122	4.91694154308131	4.52296844530384	4.33460229884146	4.36953603879053	4.07832769615159	4.20317254084551	4.16938441280447	-0.792318105302395	0.056835655373868	0.24972253789238
Merged-chr1-191333120-4	chr1	191333012	191333212	+	933.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025864, intron 2 of 7)	L1M2|LINE|L1	7147.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	4.4614860129698	4.48311967438622	4.33004900073928	4.46438985442212	4.28737830689195	4.59236666334417	4.56042610658748	4.57894505668199	0.142000990835994	0.698818883167419	0.878505428649175
Merged-chr1-87184991-4	chr1	87184890	87185090	+	895.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027084, intron 4 of 12)	intron (NM_027084, intron 4 of 12)	1676.0	NM_027084	69453.0	Mm.84618	NM_027084	ENSMUSG00000036480	Prss56	1700027L20Rik	protease, serine 56	protein-coding	4.08235509803899	4.20549513541807	4.26965870960328	4.2416010988991	4.15385433843375	4.3053743647599	4.44889158438287	4.08057261489268	0.114427163936054	0.773172674347654	0.911211873289787
Merged-chr11-70786096-4	chr11	70786011	70786211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21664.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	6.8537379358543	7.01883815088081	6.2137150146492	6.62587594661268	6.79807962835066	6.94912264832142	6.75246141741448	6.60245723826258	0.0968038492063124	0.688482408647648	0.872791361493391
Merged-chr11-105466967-4	chr11	105466866	105467066	+	956.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10231.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	4.35084279686292	4.31885246297478	4.26196100605559	4.50616807902651	4.42419946371138	4.34109654688848	4.09811921582144	4.54811217683959	-0.018623821491203	0.961857015053575	0.98630008606927
Merged-chr4-150570042-4	chr4	150569923	150570123	+	918.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	CpG	82151.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	4.23634365998269	3.81158022422055	4.15226181723194	4.05657029374972	3.83675828525048	4.1372731094934	3.84275817086701	4.23427457506622	-0.136331647521906	0.757112615968567	0.904554066545557
Merged-chr17-47594327-4	chr17	47594217	47594417	+	950.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 3 of 6)	intron (NM_001081635, intron 3 of 6)	850.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	4.01169927693527	4.38475223439974	3.78400786126327	4.22648090790918	4.35393844868981	4.42184417953012	3.99595081423052	4.37310188500857	0.410075628676201	0.346056752168404	0.654364893116659
Merged-chr16-17181501-4	chr16	17181367	17181567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009456, intron 1 of 3)	L3|LINE|CR1	20025.0	NM_009456	22195.0	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	6.96040633837842	7.04962575473781	7.24241233297561	7.15811122144389	7.06620253437302	7.00076252737655	6.88664946759954	7.31845813143348	-0.0429776992744208	0.828590930960618	0.934199261424475
Merged-chr8-80739380-2	chr8	80739280	80739480	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053124)	promoter-TSS (NM_053124)	79.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	7.17686625484189	7.68941929246578	7.41886844013881	6.24755937876301	7.50869532183519	7.56724598927594	7.31366158942087	7.40415322242616	0.295692117404098	0.308634792105874	0.620959801778055
Merged-chr19-28337662-1	chr19	28337562	28337762	+	643.0	f0_balb.idr	intron (NM_175459, intron 6 of 10)	intron (NM_175459, intron 6 of 10)	-326496.0	NM_001166414	19726.0	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	3.04884155211504	3.1069271313584	3.10265458181062	2.93661698000162	2.49818894245309	2.8513463611185	2.51434891335992	2.74208380047772	-2.01977472259933	0.00499895548993822	0.0475441812958729
Merged-chr8-68212248-4	chr8	68212160	68212360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64268.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	5.77692075148699	5.17077590095668	5.9140775623367	6.41577985201188	5.49154800847461	5.46926259583834	5.77198454467022	5.79752744448273	-0.442900238457919	0.197666182063061	0.499044730396766
Merged-chr13-52268503-4	chr13	52268405	52268605	+	942.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	171764.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	4.90557557162301	4.74714055106485	4.90639991250527	4.87853799626556	4.34243115575751	4.64458837481263	4.91575959958801	4.96912689776933	-0.267944277367764	0.456176237461027	0.73955513964784
Merged-chr9-108518200-4	chr9	108518103	108518303	+	966.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175143, intron 1 of 9)	intron (NM_175143, intron 1 of 9)	1116.0	NM_175143	69232.0	Mm.335449	NM_175143	ENSMUSG00000006673	Qrich1	2610028H07Rik|b2b2404Clo	glutamine-rich 1	protein-coding	4.53863760399203	4.73137906645126	4.95707528657996	4.32619749236225	4.88712291494027	4.62695190040827	4.86673629689943	5.13394871750159	0.518487260389282	0.159742991567853	0.447447858467163
Merged-chr11-83675912-4	chr11	83675813	83676013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13329.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	5.60067961562611	5.43687975000294	5.39737175694453	5.5832635030316	5.84220648034894	5.82957093292247	5.49038162493767	6.17145934561103	0.569043850884908	0.0416025409725339	0.206530008640256
Merged-chr6-53289375-3	chr6	53289280	53289480	+	803.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 1 of 10)	intron (NM_001327821, intron 1 of 10)	2077.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	3.54967300692431	3.52527431462404	3.36392759050728	3.6283840757347	3.74543366079465	3.97937506274521	3.79506039940111	3.76125052034936	0.879937356692818	0.0641858607752657	0.269221295469807
Merged-chr18-80161664-4	chr18	80161519	80161719	+	948.767822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-10137.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	3.77449479228082	4.09100925667645	4.60338485584684	3.60441927298531	4.17339684764714	4.07130787069181	4.12611649555922	4.31403606155178	0.265517252769023	0.587864149977094	0.81938595044196
Merged-chr3-96579942-3	chr3	96579834	96580034	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027241, intron 6 of 7)	intron (NM_027241, intron 6 of 7)	-13133.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	4.78452099590252	4.5426813527802	4.82365744807636	5.03944211225386	5.01838899357443	5.03425593821888	4.97550375259624	4.99645856789974	0.354438482329266	0.289189733282762	0.601210234982585
Merged-chr3-67515177-4	chr3	67515056	67515256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164763, intron 1 of 5)	CpG	367.0	NM_001164763	109222.0	Mm.38002	NM_001164763	ENSMUSG00000049404	Rarres1	5430417P09Rik|AI662122	retinoic acid receptor responder (tazarotene induced) 1	protein-coding	4.54921118764071	4.31748817106113	4.33559442630181	4.25319039482731	4.40697590498614	4.68187890051724	4.67598447029292	4.62345360490256	0.539111884253126	0.141210236218647	0.418033746623153
Merged-chr8-95136025-3	chr8	95135938	95136138	+	739.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010631, intron 2 of 19)	(TTTTG)n|Simple_repeat|Simple_repeat	6502.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	3.26849968653778	3.19804734291319	3.32442511115281	2.77918570827304	3.55379039618143	3.13160954744597	3.01066633929428	3.37558187907382	0.503240748284477	0.41326095185235	0.708282525004032
Merged-chr13-49186900-2	chr13	49186800	49187000	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013610)	promoter-TSS (NM_013610)	-647.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	3.86223668395347	3.90341837357219	4.0671167043717	4.01647083664034	3.92486388198584	3.80662631614958	4.26377908937438	4.53242411743034	0.504745777444485	0.264531986402354	0.576554665323448
Merged-chr13-100108086-4	chr13	100108002	100108202	+	983.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011353)	promoter-TSS (NM_011353)	83.0	NM_011353	20365.0	Mm.286177	NM_011353	ENSMUSG00000021643	Serf1	4F5|Msmac1|m4F5	small EDRK-rich factor 1	protein-coding	5.4528031505526	5.31180107526255	5.2311596180406	5.32698515798886	4.87811724660739	5.20967116504844	5.11122819594807	4.83967829569895	-0.606739561694826	0.0470120473624931	0.222995503079761
Merged-chr11-107318745-4	chr11	107318630	107318830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	B1_Mur1|SINE|Alu	-129349.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	6.4014355204293	5.94739393072533	6.86429271556957	6.24956380630694	6.93301117320382	6.6869520894077	7.1043383720114	6.84646594657029	0.723468990503922	0.00493537343262128	0.0471031034540829
Merged-chr7-19803903-4	chr7	19803799	19803999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7090.0	NM_023224	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	6.30761856142898	7.0865991271233	6.84133701547117	5.96294877370209	6.69450945314721	6.50598966115221	6.59955954189762	6.13805781629504	-0.166088500542421	0.585946008554158	0.818478990587386
Merged-chr17-34655799-4	chr17	34655713	34655913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_017406)	TTS (NM_017406)	8667.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	5.28408743139286	5.70357968808603	5.54529635346996	5.37996286147382	6.10104116529147	6.33746834047541	5.87307054727076	6.23010529385818	1.06742846153515	5.47113683858627e-05	0.00122270031093793
Merged-chr6-72396116-4	chr6	72396015	72396215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5448.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	6.865878884869	7.03561500838264	6.35539488693604	5.87719271389017	7.01745075647207	7.24849702207579	6.63395374591322	6.73803144326527	0.462845687596869	0.125319158532905	0.392906674142633
Merged-chr17-65604517-4	chr17	65604407	65604607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355402, intron 1 of 6)	MTE2b|LTR|ERVL-MaLR	9048.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	5.78755038242479	5.51561358870215	5.32095070675129	5.51495618666054	5.63097185151451	5.81686580912923	5.66416677189837	5.87311599704048	0.339785553893365	0.206456880331607	0.510433980032075
Merged-chr11-103269610-4	chr11	103269524	103269724	+	837.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2223.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	4.2059276882369	4.41673731495882	3.81142686822862	3.73402584011113	4.35050455037119	4.14847993795705	3.90596600064939	3.86569103005959	0.0560129713358145	0.906836027952263	0.965432195798165
Merged-chr7-45644652-2	chr7	45644552	45644752	+	923.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172418, intron 9 of 9)	intron (NM_172418, intron 9 of 9)	4675.0	NM_172418	74490.0	Mm.107442	NM_172418	ENSMUSG00000042918	Mamstr	2810022D01Rik|5430432N15Rik|AW743872|Mastr	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding	2.72266630106436	2.62607766789161	2.66339327410493	2.5757634536398	2.59041784204557	2.56821956596256	2.38769794661379	2.59963208893301	-0.546681980032847	0.421408654965979	0.714001052191097
Merged-chr11-59948185-4	chr11	59948086	59948286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045273)	promoter-TSS (NR_045273)	-28.0	NM_138675	192191.0	Mm.125288	NM_138675	ENSMUSG00000061650	Med9	BC019367|Med25	mediator complex subunit 9	protein-coding	6.03278582699371	6.2062595893577	5.45812044284056	5.63082530192558	6.13281088966723	6.4205055843038	5.58500076228312	6.32784047430029	0.453633956775414	0.143592714407694	0.42198034015215
Merged-chr13-41433350-3	chr13	41433261	41433461	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	53999.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	4.5011495519642	4.81539468989637	4.71741828276506	5.00109390283142	3.79298194598451	3.91942611573404	3.96319159187498	3.91764157667133	-2.2786463679039	1.28194099390647e-07	5.37697572217256e-06
Merged-chr10-25362410-4	chr10	25362313	25362513	+	936.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	2615.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	4.66459979126467	4.65462041495283	4.54597072282047	4.49723473569759	4.65719806047162	4.49706329385021	4.85098701658091	4.54307780739144	0.134042627974008	0.702958391321457	0.880452322371581
Merged-chr9-15933107-4	chr9	15933021	15933221	+	928.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 21 of 24)	intron (NM_001080814, intron 21 of 24)	-58565.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	6.05852079106321	5.83418965009838	6.49798995212611	6.95237921445268	4.74259691320603	4.9246538684991	5.14639240731552	5.13001058887929	-2.43243311174515	3.33128859724966e-12	3.27963749742232e-10
Merged-chr18-46533806-4	chr18	46533706	46533906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7835.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	6.78048540606348	7.40067576185624	6.73854687857819	6.67888963030717	6.70256420148305	6.91528477476278	6.49897956444716	6.32277810610261	-0.431783947334503	0.0961551828541018	0.339783667599249
Merged-chr15-78899830-4	chr15	78899727	78899927	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316686)	promoter-TSS (NM_001316686)	59.0	NM_009164	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	4.41856298106096	4.64688622227229	4.41925908170807	4.14916388614933	4.34131471396377	4.36665444247072	4.55538598532256	4.28389776027926	-0.0443413378927343	0.909910010421149	0.966591816010253
Merged-chr2-129544758-2	chr2	129544614	129544814	+	597.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-8112.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	2.64702377012612	2.32914794890622	2.64746760497076	2.25330623554416	2.19821788487494	2.15573695344537	2.04985493749459	2.05309613176926	-2.50599308005311	0.00719966114545299	0.0621772240563211
Merged-chr14-61968721-4	chr14	61968674	61968874	+	866.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-286401.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	4.02261399540468	3.81661362424817	4.23323345440285	3.90011742494364	3.63661157446948	4.14744855538337	3.64240306196753	3.87592125775863	-0.45287077620063	0.335590496943383	0.645927430703489
Merged-chr3-61393185-4	chr3	61393060	61393260	+	970.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	28653.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	5.06491942073401	5.33068958653909	5.28785254075302	5.07985886553771	5.21249112036173	5.57005063586198	4.77514899439048	4.99117224553065	-0.0413247687309452	0.901475811891919	0.96338333180174
Merged-chr5-43186806-4	chr5	43186702	43186902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-46661.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	5.77265711406028	5.47914057516769	5.91387306496356	6.14690404672683	5.99130982249223	6.06586015570813	5.69430233746218	5.61207107737981	-0.0126983843319901	0.964855218007445	0.987567650665093
Merged-chr5-21692519-4	chr5	21692424	21692624	+	896.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359965, intron 1 of 4)	intron (NM_001359965, intron 1 of 4)	8872.0	NM_001359964	242864.0	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	3.88188672616689	4.18900459309466	4.10262678227699	4.01984347048121	4.30868452499178	4.42009533828723	4.61248840833802	4.52789072808581	1.0094733188133	0.0101216885566386	0.0796193296411474
Merged-chr11-69125841-2	chr11	69125741	69125941	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011786)	promoter-TSS (NM_011786)	-536.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	3.51005816481052	3.97758755052785	3.2416402948513	3.70780828706909	3.62954105735195	4.13601222514091	3.55671660312139	3.83173237163884	0.484058592825444	0.374775210722529	0.677891254741963
Merged-chr9-108692065-4	chr9	108691954	108692154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008924)	promoter-TSS (NM_008924)	-89.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	5.77744683105266	6.27099401767888	5.92368251329103	5.92943439909002	6.06824734986205	5.90391787575572	6.33025977644391	5.58127882348339	0.0213307774173303	0.93902585564887	0.977881364615113
Merged-chr7-118382140-4	chr7	118382056	118382256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362179, intron 7 of 7)	intron (NM_001362179, intron 7 of 7)	61404.0	NM_001362180	110058.0	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk|sytXVII	synaptotagmin XVII	protein-coding	5.20540734263352	5.05560095555477	5.14094202690102	5.18484091759692	5.34586702721821	5.28240957002746	5.32955412868643	5.43459681508752	0.364642879345861	0.199956625532207	0.50185984431534
Merged-chr12-85963881-4	chr12	85963770	85963970	+	955.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	115171.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	4.92073147498307	4.92096928348763	4.95443094354592	5.21704282441137	4.29451447071573	4.66968009023384	4.16119557352264	4.8844832968006	-1.03837704908137	0.00686674721871843	0.0600599902041238
Merged-chr8-69272592-2	chr8	69272482	69272682	+	901.583374	f0_balb.idr|f1_balb.idr	intron (NM_172491, intron 1 of 5)	intron (NM_172491, intron 1 of 5)	1502.0	NM_172491	211135.0	Mm.294970	NM_172491	ENSMUSG00000079038	D130040H23Rik	-	RIKEN cDNA D130040H23 gene	protein-coding	4.5410220090632	4.98792804340032	4.67680426785603	3.71041773199681	3.64025666374274	3.85587480868696	3.77727476613685	3.90978253560108	-1.97121283806756	0.000194144333734452	0.00354697113215724
Merged-chr11-106787681-4	chr11	106787580	106787780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355676, intron 2 of 13)	CpG	814.0	NM_007840	13207.0	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	7.24768101206203	7.52808352303482	7.34512330591691	7.39915851670527	7.58563517999294	7.56258577526281	7.32904328409078	7.40040797660058	0.120091257854697	0.506144142021212	0.771882287460424
Merged-chr14-114869538-3	chr14	114869434	114869634	+	974.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37569.0	NR_045661	75822.0	Mm.410813	NR_045661	ENSMUSG00000115320	4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA	3.67509151137678	3.84889704731738	4.26018942571568	4.54330034131583	3.2430211001608	3.32475986499953	3.71578974859843	3.55504363453674	-2.05744890011629	0.000308989766829831	0.00519328987324216
Merged-chr3-84259813-4	chr3	84259717	84259917	+	986.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271727)	promoter-TSS (NM_001271727)	-38.0	NM_001271727	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	5.36575332765595	5.27807093998942	5.36669317924108	5.37785285712715	4.84519796592765	4.98391518243866	4.45851867907936	5.09641722477207	-0.928054535460883	0.00448158386165477	0.0438299886903991
Merged-chr19-60608970-4	chr19	60608875	60609075	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger8|DNA|TcMar-Tigger	-27952.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	5.15807130464814	4.86733907813953	4.8515624390654	5.26753527752681	4.89227512640126	5.13568743843802	5.19217196464216	4.84842170605075	-0.0847802784502505	0.798126239856001	0.921955533143952
Merged-chr9-40320645-2	chr9	40320545	40320745	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357622, exon 1 of 17)	exon (NM_001357622, exon 1 of 17)	678.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	3.29341362040115	3.20963913628374	3.18699894123607	3.01332583533935	3.00599424652285	2.90717596728919	3.17446120556502	3.00639432056717	-0.592101791629365	0.309522443297089	0.621756150990825
Merged-chr7-133776438-1	chr7	133776338	133776538	+	766.0	f0_balb.idr	promoter-TSS (NM_025850)	promoter-TSS (NM_025850)	365.0	NM_001286032	101437.0	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	4.35627194974725	4.17304371151877	4.35696182204062	4.11812237929905	4.3071723609916	3.96896419289495	4.29440330462059	4.78029193940443	0.297857417388403	0.480125075322061	0.755678709554239
Merged-chr2-122032190-1	chr2	122032090	122032290	+	747.5	f0_c57.idr	intron (NM_001256055, intron 2 of 7)	intron (NM_001256055, intron 2 of 7)	3607.0	NM_001256055	100042807.0	Mm.329403	NM_001256055	ENSMUSG00000043424	Eif3j2	Eif3j-2|Gm9781|eIF3 p35|eIF3j-B	eukaryotic translation initiation factor 3, subunit J2	protein-coding	2.60727399603317	2.5436063424999	2.60750776224824	2.18477952519232	3.74051917528799	3.25155694817508	3.28865233525697	3.83582137331807	7.48322772225553	1.14400393412572e-13	1.48052829140245e-11
Merged-chr15-74968377-4	chr15	74968270	74968470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13264.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	5.75047064102973	5.77484475412806	5.47070202236598	5.67614177961241	6.20224424403293	5.85024326792782	6.05100337932614	5.95591087273621	0.571927831184894	0.0236014570720564	0.142705412243621
Merged-chr13-60479957-4	chr13	60479866	60480066	+	945.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121981.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	4.59239307945668	4.32002391583071	4.27156944033562	4.4689587903746	4.97245719110056	4.68465913218158	4.6873346977591	5.00280168838251	0.918816660638178	0.00984209084745528	0.0780035836132969
Merged-chr1-136624856-4	chr1	136624743	136624943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177643)	promoter-TSS (NM_177643)	-58.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	7.33081856246895	7.20000454334131	7.34215028483784	7.46612750630183	6.98635690616926	7.27671382015353	7.42921085918153	7.05739017990809	-0.203768533995201	0.301372205693307	0.613400404936288
Merged-chr9-57643979-4	chr9	57643901	57644101	+	913.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	1652.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	3.988164201944	3.84008077591343	4.32791645055194	4.98242671885695	4.32390408327735	3.7326186193159	4.53866832399068	4.2369943348144	-0.320627652874087	0.553734346069541	0.800354486026964
Merged-chr2-38469371-4	chr2	38469292	38469492	+	882.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42305.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	4.54024154198399	4.01002738969672	4.08015206028671	4.22364626362582	4.56645970108064	4.20514163330742	3.9594828411953	4.17477346054958	0.0735310922483584	0.866278110387179	0.949874431032359
Merged-chr8-109872472-3	chr8	109872349	109872549	+	903.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122594, intron 1 of 18)	intron (NM_001122594, intron 1 of 18)	3846.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	3.43732529235738	3.46329392315056	3.8742463846699	3.92228921878627	3.53603077599323	3.29530314016154	3.30558501578813	3.25033329753036	-1.14297788464364	0.0389122102119535	0.198163569483912
Merged-chr2-164769762-4	chr2	164769642	164769842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026785)	promoter-TSS (NM_026785)	-187.0	NM_026785	68612.0	Mm.89830	NM_026785	ENSMUSG00000001403	Ube2c	1110015A16Rik|D2Ertd695e	ubiquitin-conjugating enzyme E2C	protein-coding	8.30197300337166	8.20203906598857	7.98624679908419	8.07743287935649	8.30605476913099	8.31690632376628	8.30212951392244	8.16478648448711	0.165316235375629	0.29997085892924	0.612179983023751
Merged-chr7-128359316-4	chr7	128359219	128359419	+	914.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58853.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	4.59634341270954	4.13894046285286	4.48393299179727	4.23372642686093	4.43203474916513	4.13773317285427	4.33999219498756	4.59401949974624	0.0588598386719328	0.882777496828201	0.955814918609989
Merged-chr4-99936932-3	chr4	99936819	99937019	+	634.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028132, intron 1 of 10)	intron (NM_028132, intron 1 of 10)	7468.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	3.5970784419104	3.31791822483703	3.37608311282058	3.53089690912054	3.53336488574882	3.42722267670621	3.53145873438572	3.73926407453429	0.323532581001798	0.517010180703888	0.778629151390102
Merged-chr11-115579172-3	chr11	115579074	115579274	+	754.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002929, intron 11 of 18)	intron (NM_001002929, intron 11 of 18)	14730.0	NM_001002929	445007.0	Mm.4379	NM_001002929	ENSMUSG00000020739	Nup85	Pcnt1|frount	nucleoporin 85	protein-coding	3.34793192769896	3.58507914010806	3.13967062397569	3.27082588921524	3.82063057544913	3.4646043725575	3.89813475070155	3.95513037281639	1.44513716243003	0.00529412313386739	0.0496517894679151
Merged-chr13-96670956-4	chr13	96670871	96671071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008255)	promoter-TSS (NM_008255)	-35.0	NM_008255	15357.0	Mm.316652	NM_008255	ENSMUSG00000021670	Hmgcr	HMG-CoAR|Red	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	protein-coding	9.10936801027458	9.06972918578451	9.13041908204669	9.24799870500948	9.09267603951852	9.21730416586371	9.41433964194434	8.98746194304574	0.0537608021303792	0.729845586439643	0.892804127302382
Merged-chr8-46861284-3	chr8	46861150	46861350	+	753.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121505.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	2.66178586205692	2.99204171942809	3.21704383300517	2.72830986310001	2.80902991036019	3.11005616373391	2.98719502696816	2.93633602422459	0.209651094531229	0.743597507891706	0.898967797513863
Merged-chr16-92801800-4	chr16	92801692	92801892	+	931.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	24282.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.68114076538332	4.21983451655533	4.6459445464834	5.11837705439581	4.24710116882015	3.99792755156244	3.92043664323209	4.7476613282614	-1.00234315184827	0.0351577010456382	0.185823865948428
Merged-chr1-121441230-3	chr1	121441136	121441336	+	933.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029955, intron 3 of 23)	intron (NM_029955, intron 3 of 23)	10169.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	4.49131305949717	4.30164795535158	4.57061927733866	4.47351952712942	4.32450222275913	4.49312611247883	4.34494346068425	4.60510188159448	-0.0461873454735057	0.900683176160703	0.963187016165004
Merged-chr11-97718042-4	chr11	97718010	97718210	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_054051, exon 10 of 10)	3' UTR (NM_054051, exon 10 of 10)	14676.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	3.58169533521748	3.44405983180478	3.7280553133004	3.23095461427579	3.54607792398822	3.64680802030079	3.21924609611205	3.47290612604778	-0.0564305538699085	0.915917965164887	0.968877649575957
Merged-chr1-180423478-4	chr1	180423430	180423630	+	983.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081175, exon 8 of 8)	3' UTR (NM_001081175, exon 8 of 8)	59974.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	4.68547924017662	4.61881265565005	5.11547004466237	4.72660418983668	4.54913030054642	5.00583407466992	4.54178751230024	4.51566764299856	-0.279077788287138	0.4497571737113	0.734839862538956
Merged-chr17-65607705-4	chr17	65607576	65607776	+	903.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355402, intron 1 of 6)	intron (NM_001355402, intron 1 of 6)	5879.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	4.39507683828909	4.24494780853664	4.7179087334993	4.44358911532307	4.16598593429631	4.24980437782328	4.20252946352223	3.90301213301194	-0.787170060254923	0.0545827014023081	0.243964967228565
Merged-chr14-87486089-2	chr14	87485987	87486187	+	627.25	f0_c57.idr|f1_balb.idr	intron (NM_001253755, intron 8 of 11)	intron (NM_001253755, intron 8 of 11)	69504.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	3.14727569915845	3.35577158758118	3.354120732775	3.54010643690882	3.7754754529762	3.70607227183892	3.81373049128359	3.82886137209469	1.29098929684375	0.0128859818951119	0.0944816606326724
Merged-chr17-23599220-4	chr17	23599134	23599334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011747, exon 1 of 6)	5' UTR (NM_011747, exon 1 of 6)	253.0	NM_011747	22654.0	Mm.40326	NM_011747	ENSMUSG00000062012	Zfp13	AI835008|Krox-8|Zfp-13	zinc finger protein 13	protein-coding	7.05293311872578	6.93893841635259	6.99474015325038	7.27378467561983	6.65274771483837	6.72413197994572	6.87144899924545	6.31360428823085	-0.5970048401674	0.00629467439830878	0.0561886918732406
Merged-chr9-65583242-4	chr9	65583155	65583355	+	994.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3168.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	5.13499273915529	5.39521468469099	4.92183852295392	4.83089710187827	5.20003512511894	5.09985284439307	5.40044732156398	5.37092045111419	0.361120288075675	0.260054416809948	0.571838533645824
Merged-chr11-70236846-4	chr11	70236774	70236974	+	871.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177606, intron 2 of 3)	intron (NM_001177606, intron 2 of 3)	1040.0	NM_001177601	104457.0	Mm.30016	NM_026757	ENSMUSG00000020831	0610010K14Rik	1110020A23Rik|AL033328|AU045833|Bap18	RIKEN cDNA 0610010K14 gene	protein-coding	3.60922884879509	3.75471960174585	3.8668082160418	3.78573310048822	3.89188820311074	3.83641024003985	3.65122330186064	3.60783410754872	-0.00379325875643639	0.993449791281843	0.997702270136287
Merged-chr1-172191690-4	chr1	172191585	172191785	+	955.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151641, intron 11 of 13)	intron (NR_151641, intron 11 of 13)	15119.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	4.6157525473796	4.34234109469094	5.05835048738671	5.21515502525057	4.72091294394804	4.25917896117813	4.63469135951311	4.48553616205611	-0.683265933122189	0.100953741865956	0.348744146510806
Merged-chr6-4797009-3	chr6	4796926	4797126	+	825.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49720.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	3.40300361723473	3.37568580486969	3.45739452342485	3.68666392874906	3.3366723754761	3.45988087117198	3.08538474877582	3.28666205924749	-0.699208076905437	0.197762044654965	0.499070386139272
Merged-chr7-92746344-2	chr7	92746244	92746444	+	986.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029494, intron 1 of 4)	intron (NM_029494, intron 1 of 4)	4630.0	NM_029494	75985.0	Mm.323004	NM_029494	ENSMUSG00000030643	Rab30	5033421K01Rik|AI323892|Rsb30	RAB30, member RAS oncogene family	protein-coding	3.22586271327384	3.00789486390542	3.22630150526424	2.98422749040465	3.25954246752148	3.02021040164037	3.09833458631211	3.38170121361267	0.361386540128354	0.523314188906284	0.782464816143387
Merged-chr10-44458743-4	chr10	44458648	44458848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007548)	promoter-TSS (NM_007548)	0.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.71578237261895	6.82432859441045	6.74524983901042	6.52515476781473	6.56672124385012	6.53227831044906	6.68273045625869	6.1659194276169	-0.28240431218031	0.20913542564669	0.513575693212955
Merged-chr12-12289381-4	chr12	12289268	12289468	+	914.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	27229.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	4.15950824794128	3.90414388893242	4.16013876189834	3.93476577869029	4.52087415292302	3.83782466466569	4.53958701838599	4.48829891024417	0.855367957931634	0.0473031803710542	0.223895271045305
Merged-chr17-23747028-4	chr17	23746936	23747136	+	935.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1207.0	NM_028416	73016.0	Mm.221319	NM_028416	ENSMUSG00000040680	Kremen2	2900054E04Rik|Krm2	kringle containing transmembrane protein 2	protein-coding	4.84169151319532	4.36510477325226	4.20001745422174	4.69349424762992	4.37279326207657	4.32784553262008	4.45959790063659	4.74115556620632	-0.162915242221426	0.683459512439714	0.870329981321498
Merged-chr8-84665434-2	chr8	84665351	84665551	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2599.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	4.41177381045412	4.79882354259713	4.53506631081575	3.87150200158527	3.9909394990828	4.40759633141335	4.25803599806622	4.81021773515426	-0.102472222728303	0.827582980991477	0.933903677361406
Merged-chr6-115507572-4	chr6	115507475	115507675	+	937.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-37129.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	4.69473914657503	4.74895654219177	4.87685480237118	4.89696766972212	4.60080304769074	4.70521633433288	4.71169087022813	4.65289989791499	-0.316851471371532	0.344870833141493	0.653272604871241
Merged-chr2-51376291-3	chr2	51376179	51376379	+	925.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61621.0	NR_130155	73375.0	Mm.396227	NR_130155	ENSMUSG00000086007	1700057H21Rik	-	RIKEN cDNA 1700057H21 gene	ncRNA	5.01283659779736	4.72347852156122	4.89223864060054	5.16654955609229	4.02606334224225	4.26111898087006	4.41644833470341	4.12874079520913	-1.74206793097354	7.67764478055665e-06	0.000217723935392527
Merged-chr13-20185716-3	chr13	20185609	20185809	+	621.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 2 of 21)	intron (NM_080288, intron 2 of 21)	95202.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.63946083000509	3.62905177219348	3.530561875137	2.93602844697994	3.51161122004219	3.70662557670503	3.624473401882	3.91901148204889	0.751131023375806	0.182147751943223	0.47878218634963
Merged-chr7-100530899-4	chr7	100530782	100530982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6218.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	6.45450792826036	6.45124281067646	6.63071957399805	6.30516115296567	6.37390560815942	6.50688595795852	6.13779903142524	6.8557307895743	0.051283384964141	0.833729772215882	0.936499720307167
Merged-chr8-104591371-4	chr8	104591267	104591467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024606)	promoter-TSS (NM_001024606)	-101.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	8.28339771144496	8.28539160921626	8.5467244724086	8.44579292435699	8.28515840312244	8.50174025148068	8.4063428232761	8.26784728931255	-0.0383307060059163	0.809799104740124	0.926654509851571
Merged-chr6-136988723-2	chr6	136988636	136988836	+	720.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	34213.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	3.53124024638628	3.41116503387261	3.59626669880906	3.31443495465925	4.392421847016	4.05808285936168	4.60836367899864	3.77156250491264	2.25761988653661	3.21310160448452e-06	0.000100177555455805
Merged-chr15-100914858-1	chr15	100914758	100914958	+	585.0	f0_balb.idr	intron (NM_001077499, intron 1 of 26)	intron (NM_001077499, intron 1 of 26)	-21413.0	NM_011323	20273.0	Mm.385012	NM_011323	ENSMUSG00000023033	Scn8a	AI853486|C630029C19Rik|NaCh6|Nav1.6|dmu|med|mnd-2|mnd2|nmf2|nmf335|nmf58|nur14|seal	sodium channel, voltage-gated, type VIII, alpha	protein-coding	3.06024132687128	3.49799812170161	2.77537963784551	3.24002407654696	3.01922651236073	3.35382502466854	3.11232041228505	3.29375726293566	0.101287051860695	0.872994976142803	0.952393788567689
Merged-chr1-154074267-4	chr1	154074177	154074377	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126910.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	5.18411655610864	5.18988210908667	5.30661496902603	5.14340779101788	4.95011164870499	5.3586790207787	5.25108641836375	5.24363836992867	-0.00764772869939571	0.97969319026926	0.992731846856856
Merged-chr7-132859871-4	chr7	132859778	132859978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198017, intron 1 of 8)	intron (NM_198017, intron 1 of 8)	653.0	NM_198017	109359.0	Mm.274824	NM_198017	ENSMUSG00000030965	Abraxas2	AA589499|AI853413|Abro1|C430003P19Rik|Fam175b	BRISC complex subunit	protein-coding	6.1819893096483	6.05807721708407	5.83535144361452	6.16180296145807	6.17599255471957	5.79760632050264	6.11308225667077	6.10036026562752	-0.0174785184265638	0.943173597051616	0.979449878554173
Merged-chr3-61363276-3	chr3	61363153	61363353	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1254.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	5.02366700706368	5.36586247129525	5.4184600969043	5.17689859862503	5.08368188966257	5.30071793206706	4.89009197545951	4.94811087768247	-0.353792757939923	0.259934259841118	0.571697947694309
Merged-chr2-27725113-4	chr2	27724955	27725155	+	821.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	14472.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	3.53632777406077	3.83939814928185	3.76563085758865	4.08009314350591	3.93598815538624	3.98676437690688	3.7506078521166	3.65424180665389	0.0125796841713688	0.97920525474172	0.992606608380485
Merged-chr3-79846779-2	chr3	79846681	79846881	+	705.25	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4119.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	3.81110801431996	3.33035918053264	3.24835618279511	3.63037176126565	3.7518141099173	3.83617459880178	3.54619127825178	3.66460639513181	0.543772526030165	0.292293715833727	0.60464613451935
Merged-chr5-114897609-4	chr5	114897471	114897671	+	879.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011854, exon 1 of 6)	5' UTR (NM_011854, exon 1 of 6)	637.0	NM_001359181	23962.0	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	4.16818176065771	4.24122968773875	4.21687523847736	4.01070988262626	4.13654049672699	4.7514963110759	4.24419093238304	4.50789342532054	0.651147384042712	0.111233048763258	0.368537125696065
Merged-chr10-68276525-4	chr10	68276425	68276625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	2201.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	6.04223250565286	6.74908841602624	5.99440546216353	5.68212490008778	6.76683202419829	7.27906997857915	6.71109022698674	6.80814136363142	1.06194261777097	0.000341838312035911	0.00564556587516847
Merged-chr1-61042903-1	chr1	61042803	61043003	+	998.0	f0_balb.idr	Intergenic	MLT1K-int|LTR|ERVL-MaLR	64989.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	2.64977478342244	2.71209199725026	2.98169827965119	3.08560296408458	2.1866609911065	2.30950216900114	2.28624547695609	2.36966152086785	-5.03337256476662	1.19980912869042e-05	0.000324472697458418
Merged-chr10-95525141-4	chr10	95525027	95525227	+	952.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	intron (NM_080560, intron 1 of 3)	9965.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	3.81112787437996	4.44707295083867	4.05169524942398	4.21721143004782	4.85642995565909	4.82704674137671	4.23699129157006	4.34433816514637	1.0176842341073	0.0211154680240465	0.132701562642028
Merged-chr8-25096981-4	chr8	25096892	25097092	+	958.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	4819.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	5.1289937421708	5.26169731808545	4.91594587393309	4.9992030633118	5.35956112963431	5.45621569069421	4.85377077867774	5.28057695949248	0.333417803560643	0.295307519549533	0.607364100260525
Merged-chr3-144585103-6	chr3	144584981	144585181	+	939.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053102, intron 2 of 4)	intron (NM_053102, intron 2 of 4)	14654.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	3.2402749733009	3.13682632465389	3.29939255796407	3.51239463225682	3.43351640289796	3.15521477796092	3.44658426322633	3.3537490265532	0.137209101279445	0.802265976052622	0.923797328515538
Merged-chr4-53386427-4	chr4	53386304	53386504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR89|LTR|ERVL?	-54009.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	5.3358083748102	4.97814944889515	5.18280832903339	5.52542640704162	5.01252191434965	5.48057275518889	5.25123510574877	5.36163323561599	-0.0154301943818711	0.96150880526632	0.986241393348869
Merged-chr13-43512949-3	chr13	43512842	43513042	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-31969.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	5.13885759645309	5.41848274633091	4.93234083314976	4.81845010575399	4.01600629901124	4.17566763670458	4.49628058531856	4.16147367549253	-1.9650591303616	1.44900882896868e-06	4.90437467604194e-05
Merged-chr13-94143498-4	chr13	94143429	94143629	+	889.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	85733.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	4.92210542270625	4.19974711966664	4.5491908794434	4.84658540138318	4.16125658977399	4.41590642651157	4.40454407855296	4.33159591448607	-0.775725871471769	0.0558583427479658	0.247408000053491
Merged-chr7-126637320-2	chr7	126637220	126637420	+	723.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-11850.0	NM_019738	56312.0	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	3.27679483646348	3.20713670940991	3.22016536854959	2.96768325985174	3.46372010127108	3.07230185510686	3.14926141550057	3.38226820665615	0.451481539306734	0.422783451311873	0.714904276021855
Merged-chr15-73629602-5	chr15	73629483	73629683	+	835.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4839.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	3.54064340431862	3.36160813076135	3.94807260027693	3.52702090256903	3.55652576944461	3.28639674430231	3.47303991873048	3.30643189901624	-0.633447904378156	0.238964156446355	0.54944696487693
Merged-chr10-25131018-3	chr10	25130923	25131123	+	774.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69147.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	3.42408111618369	3.40427897729017	3.58958750535566	3.76771793061655	3.16241523818434	3.20656140492386	3.41161112508256	3.98233414248164	-0.238381079574803	0.683952856769491	0.870489884572853
Merged-chr3-27280583-4	chr3	27280496	27280696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36481.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	5.34573955973537	4.93063042864333	5.31800048193181	5.18236741829668	5.55610180922964	5.16632956505086	5.00183205277988	5.31429404667502	0.16460565514502	0.60331915930089	0.828026186791373
Merged-chr1-31050442-2	chr1	31050367	31050567	+	840.333374	f0_c57.idr|f1_c57bl6.idr	intron (NR_136907, intron 1 of 3)	intron (NR_136907, intron 1 of 3)	45987.0	NR_136907	102634473.0	Mm.484482	NR_136907	ENSMUSG00000100371	Gm29669	-	predicted gene 29669	ncRNA	3.91246087621348	3.65731315646887	4.13792904358278	4.07334390040777	4.42938229277982	4.59243770854386	4.90307287617182	4.86803269507501	1.74326431502637	4.64481877085466e-05	0.00105999857419257
Merged-chr7-132707865-3	chr7	132707770	132707970	+	824.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69046.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	3.21831774535329	2.9998016825896	3.27364156686086	3.63409156047752	2.80270184451503	3.08203207397882	2.89506682667975	3.21698042747316	-1.23052592558172	0.0544644933810823	0.243574275846448
Merged-chr10-40133223-4	chr10	40133126	40133326	+	781.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	9028.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	4.10713205636337	3.90169256593235	4.28214412440955	4.55800585822483	4.15838588379183	4.08197473987573	3.83551637985715	3.95709471838787	-0.597146225146546	0.186967129370838	0.485173900895748
Merged-chr12-102438149-4	chr12	102438058	102438258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	1655.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.41117608962501	6.47556399784792	7.13600068811146	7.06757675584109	6.90537672118512	6.59209923426524	7.40044879269086	7.20566771027492	0.333683111695646	0.223112701307114	0.531170612293098
Merged-chr10-80329949-4	chr10	80329854	80330054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008793)	promoter-TSS (NM_008793)	-191.0	NM_001204931	70335.0	Mm.28147	NM_139292	ENSMUSG00000035504	Reep6	0610011M24Rik|Dp1l1	receptor accessory protein 6	protein-coding	8.24629972442365	8.28918317082037	8.05632903851337	7.78183451187541	8.29639568279232	8.48135455350809	8.2915994064089	8.02400640463954	0.231648329589685	0.223863265498437	0.53204528387735
Merged-chr17-42860575-3	chr17	42860478	42860678	+	720.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009847, intron 1 of 17)	ORR1E|LTR|ERVL-MaLR	15846.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	3.49351676311385	3.72131515895266	3.49396204005195	3.82011155097934	3.53066999898236	3.35397890005168	3.53636904835869	3.75015120726542	-0.322082043436987	0.524426050363203	0.782926540735944
Merged-chr6-71980258-4	chr6	71980178	71980378	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009088)	TTS (NM_009088)	62250.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	6.06376762509891	6.3967344086199	5.68845555022394	5.9742616407561	5.93182942587007	6.31768639500807	5.76402731264521	5.44501574558777	-0.244777494488943	0.41891191174865	0.712150249972705
Merged-chr12-76957350-4	chr12	76957213	76957413	+	961.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146176, intron 1 of 3)	intron (NM_001146176, intron 1 of 3)	4935.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	5.22418643835393	4.68671545209554	4.66108330707923	5.24638280724394	5.04018535829661	4.75110910532285	5.08063246205411	5.1632816692591	0.04105226647494	0.908354210807755	0.966039998613106
Merged-chr10-17733222-4	chr10	17733132	17733332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10004.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	5.46968144355924	5.43359694965416	5.35301743172246	5.42988938469176	5.47368867046558	5.64441803857431	5.55031472089927	5.59997368281428	0.242760665930527	0.361429824214818	0.666724030938332
Merged-chr8-126536333-4	chr8	126536229	126536429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57107.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	6.67746368307609	6.99336665750035	6.38906047367902	6.75572496801562	6.13979309916072	6.51085320500053	6.35628318130793	5.98420652598829	-0.690144489712008	0.004917396847456	0.0469693223570948
Merged-chr2-52378009-3	chr2	52377896	52378096	+	902.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-39198.0	NM_010889	17996.0	Mm.389247	NM_010889	ENSMUSG00000026950	Neb	AI595938	nebulin	protein-coding	3.80980922717022	4.01651145575568	3.58687776383529	3.35615110015511	3.93237853005953	3.87879571822273	3.98278761887727	3.9068421731343	0.637667071705031	0.188430107662005	0.486992724783917
Merged-chr7-80998090-7	chr7	80998008	80998208	+	963.619019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178707, intron 1 of 9)	intron (NM_178707, intron 1 of 9)	4424.0	NM_178707	233410.0	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	A730014M16Rik|Znf592	zinc finger protein 592	protein-coding	3.98857989360919	3.83960838604967	4.1380220546905	4.12387119872504	4.18598952506848	4.26354110821403	4.33285101218078	4.38926357329418	0.647210581130426	0.109978674918328	0.366215108014911
Merged-chr8-64733748-4	chr8	64733655	64733855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025436)	promoter-TSS (NM_025436)	-177.0	NM_025436	66234.0	Mm.30119	NM_025436	ENSMUSG00000031604	Msmo1	1500001G16Rik|C78600|DESP4|ERG25|Sc4mol	methylsterol monoxygenase 1	protein-coding	9.21372451244818	9.30659489710892	9.30436833897748	9.3332122124186	9.23025608260498	9.2352867410423	9.57897274890339	8.94990234335776	-0.0277330885802866	0.869317835997878	0.950961674686373
Merged-chr5-99340632-1	chr5	99340532	99340732	+	655.5	f0_balb.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-87705.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.41958870883509	3.445914982921	3.42002154963298	3.55659273451743	3.59655414902898	3.34717196373325	3.56605495227777	3.52747986836927	0.160369268684222	0.746782235459891	0.900253617240193
Merged-chr10-78412422-4	chr10	78412343	78412543	+	880.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010925, intron 1 of 12)	intron (NM_010925, intron 1 of 12)	600.0	NM_010925	18114.0	Mm.38344	NM_010925	ENSMUSG00000061032	Rrp1	AL033305|AL033306|AU018604|NNP-1|Nnp1	ribosomal RNA processing 1 homolog (S. cerevisiae)	protein-coding	4.2809187496771	4.35197271072437	4.19082144749866	3.93212969175969	4.08839341822743	4.11254391499093	4.49862739326304	4.48067530465189	0.293836641251812	0.482687641594886	0.757421686487144
Merged-chr18-46525115-4	chr18	46525017	46525217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173423, intron 1 of 2)	intron (NM_173423, intron 1 of 2)	854.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	8.13857019496412	8.18788560941706	8.16458176563501	8.30909364664599	8.13547310016435	8.22702750586932	8.23668435039048	8.05752322674481	-0.0539876837552731	0.727749510154808	0.891635953995268
Merged-chr15-68134822-3	chr15	68134731	68134931	+	994.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152182, intron 9 of 13)	intron (NR_152182, intron 9 of 13)	124025.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	4.76829334724836	5.02537091195497	5.71997432622701	5.89816333098031	4.31325415436753	4.28880954238775	4.61700527784027	5.02763417071891	-1.6560587856088	0.000167018444540604	0.00312847522735676
Merged-chr6-124898124-3	chr6	124898022	124898222	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER102a|DNA|hAT-Charlie	-9922.0	NM_013488	12504.0	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	3.81584947212394	3.9646857905627	3.96608535388621	3.59784243281359	4.07322713828645	3.93710193478519	4.03865182198113	3.76032507328261	0.368338923876805	0.414249332129716	0.709028826079521
Merged-chr3-41618610-4	chr3	41618493	41618693	+	977.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53713.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	5.58751534092643	5.35118747852404	5.85076703819361	6.15784817264626	5.25402448242638	5.13583364128345	5.56019143030506	5.71045360950829	-0.600500028108303	0.0656237719567298	0.272777065178
Merged-chr12-86817761-4	chr12	86817649	86817849	+	981.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67065.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	5.15930227186917	5.06463706608244	4.78950653311858	4.79982026559701	5.25112888069563	5.1654846672344	5.77165998277076	5.21941930053363	0.784285332416267	0.0164858818193911	0.112195102975661
Merged-chr1-144314667-4	chr1	144314555	144314755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-65551.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	6.81029948218304	6.98578910031206	6.41747455439938	6.98642450610269	6.6594655113625	6.85972271542704	6.4734631302009	6.19141532705731	-0.370251092905411	0.134522016422708	0.408199795666621
Merged-chr7-101033530-1	chr7	101033430	101033630	+	749.5	f0_balb.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-21477.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	3.33229922793969	2.81985425674101	2.92490406970702	3.32829629480019	2.43424251653716	2.61166819574908	2.57806430253185	2.65861310606949	-3.16552379273203	0.000162457079192895	0.00305539919625965
Merged-chr10-80678338-4	chr10	80678240	80678440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2047.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	7.04794662350406	6.5687406158895	6.55709859004303	6.89366650808126	6.63195075968255	6.55590644586662	6.8706526282662	6.66438314381191	-0.146423390236738	0.511755280822998	0.775640902406129
Merged-chr19-42753829-3	chr19	42753732	42753932	+	969.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	-1057.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	5.16927699262073	4.67232870189151	4.99067084550416	4.87248475840128	4.7969639075436	4.91695520103075	4.68094578622452	4.48083630183859	-0.413220785839434	0.238430493444443	0.548836356743826
Merged-chr10-111050446-1	chr10	111050346	111050546	+	784.0	f0_balb.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-40380.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	3.08605172388235	3.06765666761969	3.19364762344115	3.14033831823055	2.68328444898491	2.80406206025606	3.01783091435502	2.77042919554762	-1.38123538572421	0.0293689120564886	0.164927005228308
Merged-chr12-85342548-4	chr12	85342434	85342634	+	980.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026775, exon 5 of 5)	3' UTR (NM_026775, exon 5 of 5)	-3172.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	4.94017699854308	4.22551158630278	4.72284354849813	4.5360240981384	5.74465671524757	5.37874270465357	6.09385674179227	6.21431882447059	2.30168692317046	6.69351386201455e-11	5.2645041235838e-09
Merged-chr6-54972493-4	chr6	54972390	54972590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171007)	promoter-TSS (NM_001171007)	122.0	NM_172729	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	5.83277340335474	5.69890077497145	5.63937778871378	5.74084785073678	5.78814596861873	5.70579946044065	5.41390395841191	5.7362724554215	-0.0925143062611855	0.72346873280829	0.889624450832197
Merged-chr12-73445802-3	chr12	73445692	73445892	+	915.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger9b|DNA|TcMar-Tigger	-36229.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	3.45249290374667	3.28028810054112	3.85288627989369	3.73375667717753	3.10662064105193	3.56948112379719	3.65268154220979	3.61577701603686	-0.325891782201835	0.560922081550973	0.80477863463177
Merged-chr6-97394692-4	chr6	97394594	97394794	+	986.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	L1MEc|LINE|L1	64592.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	5.70017249317318	5.6716789481849	5.52495123039429	5.42656704346108	5.33272341602771	5.43261675628317	5.74019685587268	5.11072153947238	-0.269980841114919	0.359542168591717	0.665421323593206
Merged-chr17-66519010-4	chr17	66518898	66519098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024448, intron 1 of 5)	intron (NM_024448, intron 1 of 5)	672.0	NM_024448	19328.0	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	6.17029641309403	6.88777115688654	6.21252089917199	5.67506954920632	6.78445538696386	6.64414368495936	6.45121426023119	5.98793458715898	0.287559541196867	0.375462279439083	0.678437997263264
Merged-chr2-91508228-4	chr2	91508077	91508277	+	776.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 36 of 37)	MLT1F2|LTR|ERVL-MaLR	-18585.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	3.25020252749702	3.30673023407649	3.43072922377988	3.16561725950236	3.42072827167657	3.60239319277038	3.57343218724699	3.63537689691583	0.945631936032921	0.0603389576181113	0.259461527475355
Merged-chr19-46315434-3	chr19	46315309	46315509	+	877.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028627, intron 12 of 17)	intron (NM_028627, intron 12 of 17)	9479.0	NM_001177370	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	3.81708076751621	3.75849795035945	4.00799560250636	3.40182252970104	4.24248554623399	3.71333312785689	3.8513735813866	3.76315381081933	0.477615174431135	0.338014135848892	0.647718939249696
Merged-chr13-99339397-3	chr13	99339287	99339487	+	787.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 3 of 9)	intron (NM_026873, intron 3 of 9)	5291.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	2.99831574066749	2.90648525933282	2.9256730981661	2.57659085320523	3.60281279030519	3.18467375591355	3.59844311781182	3.7000850276883	2.86082110949879	3.22118526121576e-06	0.000100341683023228
Merged-chr16-21590981-4	chr16	21590864	21591064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 44 of 46)	intron (NM_001081366, intron 44 of 46)	103701.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	6.80708288055943	6.81864747858944	6.6789318143192	6.71881304601342	6.54646931605657	6.49144159021334	7.09535057896978	6.49566076375765	-0.104201018474552	0.649626038176126	0.852816889917714
Merged-chr17-78730086-2	chr17	78729945	78730145	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011500, intron 1 of 17)	intron (NM_011500, intron 1 of 17)	6515.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	3.05246300987942	2.98978758967671	2.93722436467163	2.8320130229326	2.97938359762316	2.84622902733434	2.92685183660765	2.87382066867148	-0.165814477817359	0.781134608755707	0.914785235722602
Merged-chr1-135284047-4	chr1	135283947	135284147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145417)	promoter-TSS (NM_145417)	37.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	5.89331095547435	5.47331418356861	5.37920411020615	5.16520970006176	5.34493229652377	5.55515688144749	5.6462159888883	5.43460565603096	0.0111784503894679	0.971052994973587	0.989599155239055
Merged-chr9-59542726-4	chr9	59542642	59542842	+	883.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	3202.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	3.90269701816909	3.81224270730111	4.0559433536728	4.10414765843213	4.35476880048683	4.07757578375198	4.13086512954254	4.38801412258514	0.689306450675051	0.100480183832896	0.347965311133684
Merged-chr2-150851465-4	chr2	150851352	150851552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 2 of 12)	intron (NR_151505, intron 2 of 12)	-8882.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	6.90319171110407	6.97143812510276	6.9437699847885	7.55594235065135	6.89091485599715	6.25039120582873	6.97129150005589	6.98945891694918	-0.450360534132272	0.0853814662233374	0.318153459549311
Merged-chr3-146157036-4	chr3	146156942	146157142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	6868.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	5.54431231205073	5.89589836386089	5.57311531112098	5.45793656435259	6.13716893583873	5.74897911745419	5.67487088923657	5.29415735885075	0.229159582861195	0.454843948558441	0.738572565672132
Merged-chr4-36038965-4	chr4	36038863	36039063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 7 of 8)	intron (NM_001166000, intron 7 of 8)	-193759.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	7.28772155130415	6.83779494786426	7.4932494251012	7.67159564828067	6.74340608809043	7.05201629904608	6.73728028983749	6.7045844049113	-0.760354034184189	0.00143579244169777	0.0180023011811065
Merged-chr8-123477931-4	chr8	123477853	123478053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054070)	promoter-TSS (NM_054070)	91.0	NR_028260	114896.0	Mm.287475	NM_054070	ENSMUSG00000031967	Afg3l1	1700047G05Rik|3110061K15Rik	AFG3-like AAA ATPase 1	protein-coding	6.64551397998564	6.4935260132737	6.76125759742248	6.2592509721931	6.52688969164115	6.68017174744795	6.40186635010391	6.7005078197107	0.0637508646533291	0.781143270918614	0.914785235722602
Merged-chr4-46507446-4	chr4	46507321	46507521	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029077, exon 6 of 6)	exon (NM_029077, exon 6 of 6)	18092.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	6.29646811164725	5.88664850897767	5.97548714243017	5.73876913938199	5.46179682616193	5.65973014151405	5.22524526551791	5.5363561112401	-0.83319240058159	0.00352422657145293	0.0362553726159053
Merged-chr11-57962721-4	chr11	57962600	57962800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46364.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	6.04152391981257	5.81063498062305	5.65365508639658	5.63703228155686	5.82418725956168	5.80294792104002	5.86660333150445	5.70210645563291	0.0285806156855492	0.911987138173175	0.96710160841083
Merged-chr7-28435835-4	chr7	28435759	28435959	+	809.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175021, intron 1 of 12)	CpG	332.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	3.72289811802134	3.94118668148022	4.44431479759898	3.77407734999175	4.11415428134664	4.23659467901807	3.99273773644583	4.67498455181027	0.714351914638199	0.133200983438615	0.406478576642108
Merged-chr17-30990443-3	chr17	30990350	30990550	+	906.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177465, intron 13 of 21)	intron (NM_177465, intron 13 of 21)	35767.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	3.54229305497637	3.51770159055373	3.28081729155539	3.49487764316174	2.99708748844135	3.06141778452515	3.26858684980606	3.21971865482931	-1.25707742784045	0.0255773936072108	0.150847070972546
Merged-chr2-152669459-4	chr2	152669398	152669598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159553)	promoter-TSS (NM_001159553)	37.0	NM_001159552	14950.0	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	6.79997066962999	6.77113054808324	6.51025330656897	6.32817041709606	6.8461830653057	7.01710359591	6.59158174536008	6.60487218660021	0.247185087199693	0.285874138693486	0.597493402574103
Merged-chr2-32506854-4	chr2	32506755	32506955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28504.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	5.44949839893593	5.55364512684958	5.26051276693928	5.81224337987745	5.58303014429534	5.43909661120835	5.68601893071435	5.8464216387167	0.151679906699496	0.602805380266834	0.827826670564199
Merged-chr2-160348285-4	chr2	160348183	160348383	+	971.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18782.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	4.26734020037876	4.51407757564517	4.72081447716942	4.61870334057518	4.58752247950189	4.96739249845932	5.00032969857369	5.02197150261055	0.734142728896482	0.0426255552338704	0.209779741131969
Merged-chr5-109596848-4	chr5	109596735	109596935	+	771.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37842.0	NM_001310694	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	3.42935635715689	3.67440078206633	4.11682584981173	3.81899914395928	4.38334650322295	4.41353643961529	3.68506850939528	4.31982438147218	1.18013156630087	0.0199875483581201	0.127963096292735
Merged-chr13-81225209-4	chr13	81225100	81225300	+	959.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	261126.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	5.64492528393755	5.21142251437018	5.75910624131179	5.98033208470396	5.15453861588805	4.85081373057752	4.82663349918932	5.49107555543236	-1.02131394505172	0.00319345618721064	0.0335081549787605
Merged-chr9-104272336-4	chr9	104272231	104272431	+	798.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9401.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	4.06163843737846	3.94081729970005	4.06224953631315	3.84365710361967	3.89391688682742	4.27882301707804	4.17705201564797	4.05977800950001	0.354180175945717	0.402429128899405	0.699908650354484
Merged-chr4-142063130-4	chr4	142063022	142063222	+	919.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-21176.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	4.80640647144356	5.29519149755733	5.60714169742351	5.99466931000735	5.52486759997108	4.47663439938542	5.16263143858583	5.36897803181301	-0.549181322996234	0.396221124574327	0.695104735895268
Merged-chr7-114874180-3	chr7	114874045	114874245	+	884.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74505.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	2.72836066657763	2.73025147306522	3.00036898851643	3.13708982856691	2.94058503072999	3.11020767231338	3.26130594014812	3.17089905522745	0.815412936361031	0.201938391771608	0.504449104650498
Merged-chr4-70420695-4	chr4	70420610	70420810	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10275.0	NM_145990	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	5.08415977237981	4.8577271456527	5.12003005363233	5.73506845903801	5.26006547301571	5.15299504385773	5.39847014286212	5.59877992788664	0.166880166645895	0.638986727797558	0.847417204773176
Merged-chr1-160906323-4	chr1	160906238	160906438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024952)	promoter-TSS (NM_001024952)	-73.0	NM_001024952	381305.0	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	8.85688332007985	8.91167121393029	8.57511293702665	8.71583515088965	8.79262020136551	8.99337693723254	8.81842229307138	8.59346834353454	0.0438832428296807	0.788266997468268	0.918062656084859
Merged-chr2-132022861-2	chr2	132022761	132022961	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 1 of 10)	B1_Mur4|SINE|Alu	7127.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	3.41372607095665	3.23675526572707	3.30756437808966	3.10277139817405	3.58405509439025	3.17340460918004	3.05412313118775	3.1896407932096	0.05384090198045	0.925230301216656	0.97241738811813
Merged-chr19-8741569-8	chr19	8741475	8741675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019829)	promoter-TSS (NM_019829)	151.0	NM_001167799	56389.0	Mm.153061	NM_019829	ENSMUSG00000010110	Stx5a	0610031F24Rik|D19Ertd627e|Stx5	syntaxin 5A	protein-coding	6.53759892175342	6.84984872787175	6.67975818439376	6.21103732978434	6.60110386072006	6.82581270599539	6.38417608192005	6.82812663413918	0.13102688050404	0.592785171073899	0.822397929572839
Merged-chr11-54464780-3	chr11	54464688	54464888	+	926.177795	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 1 of 17)	intron (NM_173753, intron 1 of 17)	26609.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	4.11786386956093	3.90829129135398	3.93820361160751	4.19549545472308	4.09012342582129	3.59451070324908	3.76930744316035	3.78191082944257	-0.603055938580595	0.197058569308219	0.498379618699314
Merged-chr8-120071989-2	chr8	120071889	120072089	+	943.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29483.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	3.24566727243304	2.97503084795648	3.08168974303325	2.83597742713811	3.33322521516533	2.85726763625019	2.94921191057074	3.02030466796195	0.104012985546293	0.866571595785881	0.950001534260153
Merged-chr1-171232029-4	chr1	171231936	171232136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010185, intron 1 of 4)	intron (NM_010185, intron 1 of 4)	2313.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	5.62006902876092	6.23771276582092	6.25595500218702	5.81731020975657	5.56680593040874	5.49354165991781	5.50799323655096	5.74759109911902	-0.692552056629367	0.0153143576230917	0.106390214793101
Merged-chr4-139218603-6	chr4	139218448	139218648	+	943.694458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	24437.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	3.71054617547773	3.98624572596463	4.24161490473381	4.02798961735771	4.19069909979379	3.94545933832209	3.91388395787273	3.87647287274485	-0.0257343168694686	0.953980866597214	0.983615143586718
Merged-chr4-35105504-4	chr4	35105394	35105594	+	872.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-46561.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	4.16231125419046	4.13080988095527	4.71572656310998	4.70754638562975	4.04658874491019	4.43126610608034	4.09646029699921	4.50695997331913	-0.45749981901102	0.297794651464479	0.609987985766329
Merged-chr2-26603910-4	chr2	26603819	26604019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026212, intron 1 of 5)	CpG	498.0	NM_026212	67512.0	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	5.81707911266242	6.01229748159229	5.88625439783978	5.78995115690375	5.57622977328422	5.52250956976366	5.78851360579171	5.74197233357815	-0.35470786182423	0.1659198676594	0.456871780439507
Merged-chr2-16212965-4	chr2	16212850	16213050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 35 of 38)	intron (NM_001310455, intron 35 of 38)	-143354.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	7.5029715769068	7.77187156789259	7.73465607888161	7.35344323367529	7.6083108493482	7.72754266269291	7.772316164308	7.20482915082154	0.00134259171789493	0.994810366554588	0.998147856401644
Merged-chr13-101694791-3	chr13	101694676	101694876	+	908.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-2146.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	3.06190752365723	3.23431891179875	3.18898785675685	3.29532378731636	3.24501922824156	3.35968493289073	3.29175293047287	3.35678054004692	0.387057475332757	0.468597068043386	0.747803507343786
Merged-chr4-133875290-3	chr4	133875180	133875380	+	931.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285506)	promoter-TSS (NM_001285506)	-549.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	3.87168664091962	3.90728323227025	3.9137694669523	3.549825031336	3.11229214325757	3.34609127473873	3.07675957068705	3.15807527685005	-2.38851144156838	6.01213199696502e-05	0.00132242751363403
Merged-chr1-178449294-4	chr1	178449141	178449341	+	942.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026626, intron 2 of 6)	intron (NM_026626, intron 2 of 6)	43223.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	3.0061308797761	3.03256973027756	3.32025312299912	2.55360823181122	3.26641269488479	3.59864361141247	3.46203580507899	3.31828047782909	1.57301992034679	0.0147172486460727	0.103452403849379
Merged-chr10-8864027-4	chr10	8863926	8864126	+	646.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	22044.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.77889893877219	3.38778471126878	3.23650207482729	3.80730869641335	3.80997820187972	4.12940180215045	3.81119046703868	3.56272460306019	0.760594059186374	0.159519284611883	0.447112548115347
Merged-chr12-54993804-4	chr12	54993719	54993919	+	912.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7483.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	4.91762167894584	4.75747745061226	4.91844130809384	4.9729864722074	4.72641771086977	4.62520794487539	4.51977003663813	4.57981523627579	-0.587863476576424	0.0828604394531176	0.312701201346409
Merged-chr8-64849693-2	chr8	64849593	64849793	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178633, exon 1 of 15)	5' UTR (NM_178633, exon 1 of 15)	231.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	5.03439723333598	4.71538404157085	5.18623150173324	5.24469718572931	4.7998795799381	4.61485276729993	4.87636225477594	4.78475797573017	-0.591352612377435	0.083130129499075	0.31334036685102
Merged-chr13-95374179-4	chr13	95374029	95374229	+	671.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025630, intron 1 of 13)	intron (NM_025630, intron 1 of 13)	1228.0	NM_025630	66549.0	Mm.36785	NM_025630	ENSMUSG00000021681	Aggf1	2010009L17Rik|2310029P06Rik|AW112072|Peg3|VG5Q	angiogenic factor with G patch and FHA domains 1	protein-coding	3.60456580155558	3.47279478759569	3.43633181295719	3.66554671114172	3.741252484261	3.35477177279199	3.64166116109595	3.79776628664594	0.294949774351677	0.553213367501493	0.800040112261297
Merged-chr10-68472988-4	chr10	68472907	68473107	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028491, intron 5 of 7)	intron (NM_028491, intron 5 of 7)	68868.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	5.11260555519749	5.48999255931639	5.21544358066906	5.79859354100411	5.04059318051358	5.39108995689127	5.45240279052736	5.17880266866549	-0.332786186607953	0.310663275279594	0.622735117044305
Merged-chr10-93317049-2	chr10	93316949	93317149	+	708.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152777)	promoter-TSS (NR_152777)	-354.0	NR_152777	102635316.0	Mm.404570	NR_152777	ENSMUSG00000111531	Gm32688	-	predicted gene, 32688	ncRNA	2.97440901605305	2.9210856415166	2.64452885919681	2.89780619845252	2.82679767023636	2.95971310235956	2.90466093578289	3.08468969350206	0.334740000220647	0.585670032367837	0.818337494389066
Merged-chr19-16436129-3	chr19	16436007	16436207	+	899.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008137, exon 1 of 7)	5' UTR (NM_008137, exon 1 of 7)	440.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	3.15651113071051	3.29427063846067	3.48008042120223	3.03806776254954	3.11965631565118	3.13843635893128	3.2610909116806	3.21505651987481	-0.229357448136331	0.683070443298517	0.870223749056668
Merged-chr1-94078497-4	chr1	94078392	94078592	+	911.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-25939.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	5.18167485627274	4.73517377585702	5.53335302318322	5.44219699164287	4.40577181343204	4.19310617615511	4.93717876969617	4.69159345351806	-1.36103651206262	0.000735641527411614	0.0105335401890226
Merged-chr17-80933784-4	chr17	80933697	80933897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_131127)	TTS (NR_131127)	-10835.0	NM_026516	68027.0	Mm.357108	NM_026516	ENSMUSG00000024245	Tmem178	2810417M05Rik|Tmem178a	transmembrane protein 178	protein-coding	6.81201958385598	6.59532811898404	7.145659480928	7.28065059606531	7.10464781676024	6.17333888382279	6.76440849509171	6.99160669237932	-0.251057958147864	0.359699201565293	0.665443059431823
Merged-chr6-92422433-2	chr6	92422333	92422533	+	802.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001134460, exon 4 of 8)	exon (NM_001134460, exon 4 of 8)	58959.0	NM_001134460	243548.0	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	2.66823978764687	2.6047780307046	2.95088433114184	2.63242235144544	3.14741428523465	3.12710100122878	3.4933472715635	2.94935192813647	2.06969501288142	0.00114993168499331	0.0150673575444684
Merged-chr2-73453923-4	chr2	73453825	73454025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289722)	promoter-TSS (NM_001289722)	-36.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	5.44101278431951	5.2686813803123	5.32102935266359	5.42002211358319	5.59839060638334	5.64486043717914	5.47077112114927	5.78801256440208	0.44894001061427	0.097564409856241	0.342280897489151
Merged-chr14-65805915-3	chr14	65805835	65806035	+	895.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023209)	promoter-TSS (NM_023209)	24.0	NM_023209	52033.0	Mm.24337	NM_023209	ENSMUSG00000022033	Pbk	2810434B10Rik|AW538537|D14Ertd732e|TOPK	PDZ binding kinase	protein-coding	3.57031623556693	3.52922322035334	3.46093226309418	3.55239920722074	3.86301270988871	3.4535382830174	3.50352430582729	3.40062099837976	0.166181670737104	0.742275620104794	0.898494026733066
Merged-chr6-83109113-4	chr6	83109030	83109230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026744)	promoter-TSS (NM_026744)	22.0	NM_026744	68499.0	Mm.333183	NM_026744	ENSMUSG00000030037	Mrpl53	1110007K17Rik	mitochondrial ribosomal protein L53	protein-coding	5.41276512621083	5.40673594175017	5.11570182056005	5.02051037687183	5.19645045137447	5.11337060280407	5.18701465405576	5.11222654807998	-0.153089912631368	0.617901230061124	0.835754664405474
Merged-chr8-83297576-3	chr8	83297473	83297673	+	826.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009463, intron 5 of 5)	intron (NM_009463, intron 5 of 5)	7225.0	NM_009463	22227.0	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	4.05795377340568	3.72903345341524	3.56567413513724	3.97148464214025	3.6194797717417	3.74175521060122	3.77051075947904	3.73232230283486	-0.410252863262071	0.38571331695736	0.68714023745984
Merged-chr16-49699146-4	chr16	49699045	49699245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028680)	promoter-TSS (NM_028680)	-149.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	8.82739979162504	8.90738688130383	8.80883762049879	8.70586368709263	8.77694547027713	8.82822162143116	8.97890314254831	8.79926519979491	0.0445020157183837	0.759938901411878	0.905851390428209
Merged-chr15-36828190-4	chr15	36828092	36828292	+	910.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31263.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	4.5755786440938	4.76009584113174	4.53754314870582	4.36605857546977	4.4803264298531	4.49876279385038	4.39369558103413	4.06571327705335	-0.424975284456429	0.276357665107551	0.588401849920445
Merged-chr7-113289392-4	chr7	113289283	113289483	+	679.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357070, intron 9 of 19)	L3|LINE|CR1	79956.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	3.61539485536943	3.67832325331273	3.55725213077839	4.11589437231529	3.77841907731387	3.4785456903875	3.85804403948246	4.00553419458189	0.0442230922001154	0.93168084068724	0.975351667244339
Merged-chr12-3110031-4	chr12	3109931	3110131	+	949.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	-125760.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	6.1234180053933	5.47540742313845	5.67991669878604	6.07356027726021	4.89452307301305	5.17519330923902	4.74461708484622	5.7692572994246	-1.1448452396648	0.00178156769919911	0.0213808506902076
Merged-chr8-53449542-3	chr8	53449457	53449657	+	926.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62145.0	NM_001205054	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	4.09934174051401	3.97373032805088	4.09996515019592	4.39500389974357	3.88828055730181	4.02716847339053	3.7821850417545	3.95481207104715	-0.682424147667313	0.119160150766437	0.38190374944411
Merged-chr4-11190734-4	chr4	11190641	11190841	+	925.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009830)	promoter-TSS (NM_009830)	-610.0	NM_001037134	12448.0	Mm.35867	NM_009830	ENSMUSG00000028212	Ccne2	-	cyclin E2	protein-coding	4.40214472796924	4.21915059833203	4.44575619377316	4.28473065229812	4.62290780151324	4.57659658898578	4.87641637776112	4.10838669121284	0.549457437267932	0.164632277480084	0.45485234168206
Merged-chr9-16038750-3	chr9	16038655	16038855	+	937.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 3 of 24)	intron (NM_001080814, intron 3 of 24)	-164199.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	5.07370901177666	5.3221127317308	5.22034631316154	5.76175250276024	3.96493094267714	4.25392346141781	4.52689612380428	4.17762991655896	-2.51171884142261	6.06395759100221e-10	4.05663944896566e-08
Merged-chr6-134531484-4	chr6	134531386	134531586	+	958.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	35427.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	4.97877076822209	5.09013151205017	4.79288262311758	4.94394620821731	5.12129355676411	5.37252317151223	5.02260432909332	4.61861615637973	0.202686830604862	0.550419333335719	0.798628080141532
Merged-chr11-72458151-4	chr11	72458037	72458237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153060, intron 5 of 12)	intron (NM_153060, intron 5 of 12)	16810.0	NM_016776	18432.0	Mm.147946	NM_016776	ENSMUSG00000040463	Mybbp1a	AL024407|AU019902|P160|p160MBP|p67MBP	MYB binding protein (P160) 1a	protein-coding	7.2309918206926	7.67544156584021	7.68961816879183	6.57688718350079	6.79524699078462	7.2634674499631	6.97662092265708	6.46242260075058	-0.625165767406495	0.0339245900545281	0.181759538349104
Merged-chr19-18624451-1	chr19	18624351	18624551	+	630.0	f0_balb.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	7362.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	4.01670538207835	4.48374533645	3.75997708611607	3.32348864851592	3.74774378380718	4.23528545357625	3.68748871600309	3.91794095825617	-0.150189037621091	0.785815062130692	0.916674445381636
Merged-chr17-57060461-6	chr17	57060403	57060603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025877)	promoter-TSS (NM_025877)	-640.0	NM_025877	66972.0	Mm.23720	NM_025877	ENSMUSG00000046329	Slc25a23	2310067G05Rik|SCaMC-3	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23	protein-coding	6.82673584426632	7.07525517633498	7.03668255445654	7.04495160348059	6.69445637824483	7.17643661866347	6.86203404133531	6.91866337183298	-0.123391631882758	0.548577268795858	0.797514668901371
Merged-chr8-10668338-3	chr8	10668226	10668426	+	893.861145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	214128.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	4.30270905018199	3.78734798459736	4.41771782959115	4.55081563314178	3.765744774975	4.00490581574114	4.02074812082865	3.7643452141495	-1.09275553924024	0.0196457739440019	0.126446020757764
Merged-chr15-80458241-4	chr15	80458104	80458304	+	855.912476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163189, intron 5 of 5)	intron (NM_001163189, intron 5 of 5)	-19601.0	NR_155274	102633578.0	Mm.397484	NR_155274	ENSMUSG00000115888	Gm31369	-	predicted gene, 31369	ncRNA	4.27966857178599	4.16522071083333	3.80622574366109	3.89956964847585	4.09723229131508	4.18921137192835	3.95113911357884	3.96529856299683	0.0290048105300859	0.946659558797244	0.98095209334417
Merged-chr19-55709998-4	chr19	55709916	55710116	+	930.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7812.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	4.90534401544445	5.2435469159137	4.870545602037	4.71690706421803	4.75385476731425	5.35781559557279	4.37805868478905	4.58629425167041	-0.252277281630187	0.527489573038582	0.784385491451589
Merged-chr17-66112470-3	chr17	66112351	66112551	+	854.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037757, intron 1 of 10)	RMER15|LTR|ERVL	806.0	NM_001037757	68767.0	Mm.296545	NM_026833	ENSMUSG00000024101	Washc1	1110049F14Rik|ORF19|Wash|Wash1	WASH complex subunit 1	protein-coding	3.92851490344331	4.39159971282595	3.92911848909887	3.36707775793798	3.85159366745702	4.10180539725953	3.64834620859799	3.47136670821847	-0.46536203808556	0.400045830254502	0.698016583884129
Merged-chr9-48480641-4	chr9	48480525	48480725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357505)	promoter-TSS (NM_001357505)	-14.0	NM_001357503	104444.0	Mm.21911	NM_024233	ENSMUSG00000032026	Rexo2	1810038D15Rik|AW107347|Rex2|Sfn|Smfn	RNA exonuclease 2	protein-coding	8.08164824432792	7.90360096892425	7.81137335414715	7.78212684668525	7.70620077175133	7.55806268775547	7.90998690802431	7.67809695466319	-0.228300449486976	0.195220773496293	0.496006405022047
Merged-chr1-107381644-4	chr1	107381542	107381742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2D|LTR|ERVL	19328.0	NM_025867	66957.0	Mm.12638	NM_025867	ENSMUSG00000026327	Serpinb11	2310046M08Rik|AU015399	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 11	protein-coding	5.78221075789552	5.65311788752028	5.93465535422286	5.92517867147843	5.67374770868083	5.3564631534006	5.35361850812804	5.34453205716328	-0.639448282830835	0.0206527203195412	0.130856327187522
Merged-chr9-120051761-3	chr9	120051665	120051865	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009987, exon 2 of 2)	exon (NM_009987, exon 2 of 2)	16531.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	5.00202525551132	4.89296399255604	5.38133954840427	5.11181941363242	4.12041300683591	3.83038959860741	4.02426554506768	3.97621635794699	-2.62915095471149	1.45707872072873e-09	9.09766721603071e-08
Merged-chr16-59471862-4	chr16	59471767	59471967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025910)	promoter-TSS (NM_025910)	92.0	NM_025910	67014.0	Mm.289150	NM_025910	ENSMUSG00000022724	Riox2	1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204|Mina	ribosomal oxygenase 2	protein-coding	7.1187754858996	7.6778221383158	8.12223855321457	7.3110017252412	7.17179741934426	7.41599525495957	7.2887537049247	7.33066232730273	-0.412770012170108	0.091419634186093	0.330444093656869
Merged-chr13-67128218-4	chr13	67128125	67128325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172392)	promoter-TSS (NM_172392)	-3.0	NM_172392	268670.0	Mm.56274	NM_172392	ENSMUSG00000057396	Zfp759	BC028265|Rslcan-8|Rslcan8	zinc finger protein 759	protein-coding	6.64641349170626	6.28809138214982	6.45062123602156	6.19194656092939	6.78291827493303	6.97994892444556	6.83480845670026	6.68758215045881	0.627268841738751	0.00425790272553123	0.0421110543421686
Merged-chr12-44919092-4	chr12	44919000	44919200	+	822.983337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144552, intron 2 of 5)	MLT2B2|LTR|ERVL	155383.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	4.23305418190171	4.02066112128842	4.18410685410177	4.59415697274345	4.35921515625473	4.36204916242543	4.95810466803533	4.4122723177459	0.58113240234157	0.178937405690331	0.474979884379344
Merged-chr9-37540827-4	chr9	37540716	37540916	+	875.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020518, intron 3 of 6)	intron (NM_020518, intron 3 of 6)	1561.0	NM_020518	57276.0	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	3.81576110866676	3.91359657582329	3.87328195218031	3.66238863519633	4.15695090060468	4.46808386551575	4.42819070662751	4.21284090163877	1.34143182304465	0.00124585946215556	0.0160534088806609
Merged-chr17-17860293-4	chr17	17860210	17860410	+	995.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5122.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	5.3137599847858	4.92551330628217	4.90627354925313	5.00893987989609	5.23615660554557	5.64949042205277	5.34458012101429	5.36785534628853	0.6554973667508	0.0321700994250156	0.175385685276745
Merged-chr7-30956074-4	chr7	30955992	30956192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011680, intron 3 of 9)	CpG-12986	711.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	6.47993389584871	6.4277528844499	6.56053669829773	6.41841880959229	6.38457552576977	6.34298970306469	6.09177001548999	6.42627080175483	-0.218873610524784	0.317785091148137	0.629652182463903
Merged-chr10-81198416-3	chr10	81198306	81198506	+	827.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027120, exon 7 of 7)	3' UTR (NM_027120, exon 7 of 7)	3631.0	NM_027120	69564.0	Mm.437211	NM_027120	ENSMUSG00000004939	Nmrk2	2310015C21Rik|Itgb1bp3|Mibp	nicotinamide riboside kinase 2	protein-coding	3.29952931152481	3.07961816156293	2.97041960887997	3.36284089430128	3.43672631677288	3.63134499746192	3.39793865455286	3.40987928043187	0.951516164625151	0.0887814511896489	0.325166734316159
Merged-chr17-24168007-3	chr17	24167892	24168092	+	777.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361534, intron 1 of 3)	intron (NM_001361534, intron 1 of 3)	817.0	NM_001361535	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	3.29920221106736	3.22208533779469	2.85972757470168	3.15803503832606	3.15860788592282	3.23943181394236	3.11770654522464	3.34991357122117	0.272965715223773	0.631735414408505	0.843565602967326
Merged-chr7-43648297-2	chr7	43648197	43648397	+	730.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_028236, intron 5 of 5)	RLTR20B2|LTR|ERVK	11864.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	3.29217736054278	3.33482419048033	3.46398490713148	3.25315935885953	3.40105290076755	3.3428304704643	3.77359202222146	3.2909444285925	0.460426725511075	0.380127056110176	0.682564774596403
Merged-chr17-47368837-4	chr17	47368729	47368929	+	929.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146212)	promoter-TSS (NM_001146212)	-58.0	NM_001146212	64657.0	Mm.216250	NM_183086	ENSMUSG00000034729	Mrps10	1110038B19Rik|AW743084|Rpms10	mitochondrial ribosomal protein S10	protein-coding	4.19051970155263	4.09876661054156	3.76703129607777	4.2094785789661	4.29973374963833	4.17222745916209	4.61938571885492	3.99368575936995	0.514318748309289	0.240507608234608	0.551073267231004
Merged-chr4-149697922-4	chr4	149697798	149697998	+	992.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008840, intron 1 of 24)	intron (NM_008840, intron 1 of 24)	810.0	NM_001164050	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	4.98284408612575	4.85049125804805	4.91433767929172	4.88324429907341	4.90298568938144	4.81538934118179	4.95954382356593	5.16782334503082	0.122048383672204	0.70055771542859	0.879251628841564
Merged-chr7-44384123-4	chr7	44384017	44384217	+	834.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114116)	promoter-TSS (NM_001114116)	-9.0	NM_001114116	20981.0	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	4.07189646540798	4.02965365883087	3.87041271961187	3.97991339436128	4.1038421553588	4.09801323242668	4.00782798872399	4.28425788938779	0.360742212121455	0.379957568042561	0.682437540643488
Merged-chr2-156144193-4	chr2	156144098	156144298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164216)	promoter-TSS (NM_001164216)	-12.0	NM_010911	18041.0	Mm.283604	NM_010911	ENSMUSG00000027618	Nfs1	AA987187|m-Nfs1|m-Nfsl	nitrogen fixation gene 1 (S. cerevisiae)	protein-coding	5.93315887682401	6.30640852272944	5.43804849555501	6.03917938506202	6.00057994892861	6.15453951673675	6.11272905911828	6.01816428118757	0.148257296564096	0.589428864828438	0.820464677958613
Merged-chr9-108783757-4	chr9	108783661	108783861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12233.0	NM_029634	76500.0	Mm.276336	NM_029634	ENSMUSG00000032599	Ip6k2	1500005N04Rik|AW050208|Ihpk2	inositol hexaphosphate kinase 2	protein-coding	7.61053743365251	7.40377883887244	7.39277744251238	7.57336743101202	7.41998509103797	7.36462902249882	7.53216480774776	7.31590076560435	-0.120985046408619	0.49338983673331	0.764142062450997
Merged-chr8-119831624-5	chr8	119831515	119831715	+	842.8666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	8964.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	3.97946127855788	4.28561632391359	3.60901527521843	3.5245167548208	3.59431840236399	4.05694561859532	3.76547987067297	3.93067930275877	-0.10964753058933	0.830607986962607	0.93499882818844
Merged-chr7-63939124-4	chr7	63939021	63939221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021366)	promoter-TSS (NM_021366)	-206.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	9.50171516650454	9.58980045543539	9.69438022032132	9.63869704703317	9.48817002609449	9.62887423547829	9.72992674323089	9.44810163321882	-0.0380815220804439	0.788581951021838	0.91812687233996
Merged-chr14-31337508-4	chr14	31337386	31337586	+	881.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360187, intron 1 of 20)	intron (NM_001360187, intron 1 of 20)	848.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	4.11904372361486	4.19333309017691	4.07049150254841	4.27394646594876	4.25559413492344	4.19441264210123	4.10223172216278	4.41636179635252	0.177563336870585	0.655407721347298	0.856076057726398
Merged-chr12-79092746-4	chr12	79092625	79092825	+	892.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110486, intron 2 of 2)	L1MDa|LINE|L1	-3055.0	NM_029988	110417.0	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	4.35762855868267	4.05514376813219	4.22500248816953	4.49071529074778	4.0388320393449	4.64762598029766	4.33842313500247	4.22242783196344	0.0472497795894347	0.910533351124748	0.96669834733672
Merged-chr14-65598464-4	chr14	65598362	65598562	+	865.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5350.0	NM_028811	74195.0	Mm.29719	NM_028811	ENSMUSG00000022031	Elp3	2610507P14Rik|KAT9	elongator acetyltransferase complex subunit 3	protein-coding	4.42560750450795	4.12672541973139	3.98647703742989	4.3462589059517	4.06480939695387	4.16190312793231	3.80501133408502	4.30687747920116	-0.362976099589861	0.399735020447696	0.697861775510926
Merged-chr18-69675498-3	chr18	69675391	69675591	+	783.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	T-rich|Low_complexity|Low_complexity	-250068.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	3.41378865930439	3.3266678799017	3.0630576176945	3.1931312147428	3.11726675868587	3.23938891327245	3.29453637373267	3.4122757578584	0.0501141644603263	0.92686324900764	0.973180524442983
Merged-chr10-85125856-4	chr10	85125730	85125930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028832, intron 2 of 2)	L2|LINE|L2	2197.0	NM_028832	74238.0	Mm.255401	NM_028832	ENSMUSG00000049038	Mterf2	1700007D05Rik|Mterfd3	mitochondrial transcription termination factor 2	protein-coding	5.74488006643728	5.37888910745338	5.64260549237666	6.15369576713003	5.71326017762119	5.41753432347228	6.11429727653148	5.96797602218096	0.08221169249483	0.794242364061084	0.920431871081515
Merged-chr18-4280010-4	chr18	4279897	4280097	+	802.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	72956.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	4.2499467476075	4.10942664141979	3.91413065222287	3.85960844971284	4.35278688775	4.09130360923306	4.05181687604477	4.36855575699755	0.509751691180257	0.224427463953389	0.532782075570323
Merged-chr15-27784079-7	chr15	27783945	27784145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 34 of 56)	intron (NM_001081302, intron 34 of 56)	-102503.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	4.57873282649616	4.61787580118393	4.09247251381419	4.49816725412644	4.63211214657823	4.79223556463079	4.63635151033815	4.95925256363582	0.627954259438906	0.0914102750360648	0.330444093656869
Merged-chr5-65091698-4	chr5	65091613	65091813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15855.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	6.72754655467776	7.06081396292827	6.87307564268694	6.98283827770389	6.96893275069678	6.9795212454388	6.90472130002067	7.22287246425712	0.137974452949346	0.490367340948285	0.76218992069439
Merged-chr7-128622695-4	chr7	128622604	128622804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178641, intron 1 of 19)	intron (NM_178641, intron 1 of 19)	11339.0	NM_178641	101490.0	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	5.65730120645451	5.25234661934699	5.56066992815869	5.59983985319644	5.20275308884813	5.35510480629015	5.31267251730157	5.24134252718185	-0.451778517662334	0.114165098545071	0.3737794183945
Merged-chr17-24526586-1	chr17	24526486	24526686	+	756.666687	f0_balb.idr	intron (NM_001172113, intron 1 of 20)	intron (NM_001172113, intron 1 of 20)	1352.0	NM_153792	224619.0	Mm.275150	NM_153792	ENSMUSG00000052752	Traf7	RFWD1	TNF receptor-associated factor 7	protein-coding	3.10890968034344	3.20422827791408	3.05443755726069	3.36733570634651	2.69383650564912	2.6096187834852	2.65847824563453	2.73716479316811	-2.65657647499269	0.000300160170309149	0.00507364064650555
Merged-chr5-135012934-4	chr5	135012856	135013056	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001190437)	TTS (NM_001190437)	201.0	NR_026688	69812.0	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	4.88012291612153	4.72770986099644	4.35638370989248	4.66652769286002	5.39540881874086	4.8229019394436	4.92681951128806	5.19412378087984	0.884309013042774	0.0121493980461742	0.0907145708096754
Merged-chr1-9769771-4	chr1	9769688	9769888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040462, intron 2 of 3)	RMER4B|LTR|ERVK	-21406.0	NM_173443	70675.0	Mm.274493	NM_173443	ENSMUSG00000045210	Vcpip1	4932442A08|5730421J18Rik|5730538E15Rik|VCIP135|mKIAA1850	valosin containing protein (p97)/p47 complex interacting protein 1	protein-coding	5.30258497327828	5.50121213618736	5.17189248957012	5.1882615014689	5.71467532879676	5.47888757835348	5.82478395646754	5.44863155511769	0.596836860432214	0.0358210746391037	0.188003854279366
Merged-chr14-32784401-7	chr14	32784329	32784529	+	951.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1534.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	4.33222800575152	4.2154597833765	4.25095567239317	4.00060827930546	3.85670264163953	4.2425568373758	4.18891966872487	3.91173193655672	-0.369026054925768	0.388431837448552	0.688981838974675
Merged-chr2-130423870-2	chr2	130423778	130423978	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030559)	promoter-TSS (NM_030559)	410.0	NM_178762	319513.0	Mm.482539	NM_178762	ENSMUSG00000037773	Pced1a	A930025D01Rik|AI480484|Fam113a	PC-esterase domain containing 1A	protein-coding	4.93605107736333	5.18580543632843	4.72037322044715	4.88486312104342	4.48833397647208	4.64049128606857	4.34228808306255	5.0594584295607	-0.592854571035631	0.115121467600016	0.375422103710937
Merged-chr1-57406694-4	chr1	57406556	57406756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302963)	promoter-TSS (NM_001302963)	18.0	NM_001302962	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	5.83670519910079	5.92164003785314	6.07130233917528	5.93989996120942	5.73070812048041	5.72863523623601	5.89751228414611	5.39203464719474	-0.394897487414957	0.128885166821408	0.399386908540748
Merged-chr2-170173920-3	chr2	170173843	170174043	+	641.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31268.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	3.58963889114861	3.49757548855854	3.64001120363789	3.53478486112657	3.34756324055106	3.41973735924007	3.57527715697487	3.36711957121058	-0.46070301665937	0.35525664122117	0.661813745489821
Merged-chr2-93588269-3	chr2	93588169	93588369	+	743.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54165.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	3.5673289257505	3.14716154725287	3.37058921911553	3.17524823856828	3.42449030993742	2.96172844142359	3.24686608667291	3.25733430544406	-0.292106165931461	0.614478529588074	0.83391422634463
Merged-chr6-52160243-4	chr6	52160146	52160346	+	984.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131181, intron 1 of 1)	intron (NR_131181, intron 1 of 1)	1722.0	NR_131181	105242658.0	Mm.372521	NR_131181	ENSMUSG00000087658	Hotairm1	Gm15051|Hoxaas1	Hoxa transcript antisense RNA, myeloid-specific 1	ncRNA	4.96444390158242	4.81821956579449	5.43055051623238	5.36837120914116	5.37314839348487	5.1853035914276	5.78199713132838	5.82816392901563	0.685196054897004	0.0429975955386688	0.210969980497193
Merged-chr14-70392769-7	chr14	70392653	70392853	+	996.0476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021308, intron 16 of 22)	intron (NM_021308, intron 16 of 22)	36341.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	5.63133257822528	5.11283147678245	5.21889730515819	4.91877113109267	4.99558319872654	5.45133209340521	4.96018851508653	4.8656641601624	-0.282149284369154	0.420709862874667	0.713502676424968
Merged-chr2-77238804-4	chr2	77238713	77238913	+	990.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 3 of 17)	intron (NM_175465, intron 3 of 17)	41779.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	5.23685736527188	5.49110877431637	5.73920323832134	6.16454140432756	5.87110661383532	5.27009587544827	5.60903737721025	6.14688638124537	0.0756156245222686	0.82775932168017	0.933903677361406
Merged-chr1-191163653-3	chr1	191163543	191163743	+	928.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001109759, exon 1 of 1)	exon (NM_001109759, exon 1 of 1)	1174.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	4.07783690790114	4.4368118924899	4.21595852759883	4.44221902353787	4.17477392392127	3.9904257772395	3.9618098759193	3.80899963221797	-0.80581371335946	0.061459947697025	0.26234828288615
Merged-chr3-103968477-4	chr3	103968383	103968583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030676)	promoter-TSS (NR_030676)	-167.0	NR_030676	100125931.0	Mm.400392	NR_030676	ENSMUSG00000089998	Phtf1os	A130049A11Rik	putative homeodomain transcription factor 1, opposite strand	ncRNA	6.95034415295624	6.98831518191337	7.45174634602227	6.90715155900866	6.26939504882579	6.76826082003334	6.62138927555814	6.69744230155935	-0.697775865563507	0.00301630497752074	0.0321186281022589
Merged-chr13-37299057-2	chr13	37298965	37299165	+	770.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-46280.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	2.44154352219541	2.69990341043207	2.85323100119898	2.76406523254949	2.63823095093235	2.96185259884608	2.78278877009116	2.85168916164924	0.511377874503438	0.445328727359064	0.731414774209488
Merged-chr17-25813763-3	chr17	25813668	25813868	+	960.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164225, intron 1 of 5)	intron (NM_001164225, intron 1 of 5)	4683.0	NM_001164225	214931.0	Mm.152289	NM_001164225	ENSMUSG00000025738	Fbxl16	BC042620|Scirr1	F-box and leucine-rich repeat protein 16	protein-coding	3.72857836409364	4.21778823788232	4.07849610633721	4.0451673696486	3.80051741272172	3.90512211988601	3.65728832144423	3.98556782859677	-0.536545922951518	0.237554894669802	0.547728283751802
Merged-chr16-57181379-4	chr16	57181279	57181479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 14 of 17)	intron (NM_026254, intron 14 of 17)	-14047.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	8.11582793639263	8.1903357538035	7.85518661637707	8.05577213082965	8.13813205842732	8.02513147696117	8.30489552240155	7.74607436298363	0.013266785865246	0.942764273127264	0.97926361084735
Merged-chr19-10018192-4	chr19	10018095	10018295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347430)	promoter-TSS (NM_001347430)	1.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	7.06353898854431	7.09640920882247	6.87410947929066	6.94474429245715	6.95861579681787	6.90632880839806	7.26395945004166	6.64453217024505	-0.045296915413763	0.830841527710307	0.935084262552842
Merged-chr9-119357518-4	chr9	119357406	119357606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001199568, exon 1 of 20)	5' UTR (NM_001199568, exon 1 of 20)	125.0	NM_001359699	102448.0	Mm.219497	NM_001033209	ENSMUSG00000035769	Xylb	AI132223|AI327421	xylulokinase homolog (H. influenzae)	protein-coding	7.35794308375765	7.21504497865733	7.05695723514333	7.06383051135743	7.26762193205832	7.53599277985517	7.42713785992647	7.37381900158568	0.306358806684904	0.100646364553748	0.34827746273108
Merged-chr18-36560392-4	chr18	36560283	36560483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175375)	promoter-TSS (NM_175375)	-220.0	NM_175375	108857.0	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	9.1343615296787	9.39234796472859	9.14894543093605	9.19489714244173	9.29442204978696	9.73331921884232	9.4456979026832	9.3625111014575	0.301885350563325	0.0602007345343914	0.259054008034929
Merged-chr1-154094483-4	chr1	154094377	154094577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106710.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	5.80611928369752	5.99997033542035	6.09710423472098	5.83834111004723	6.07055384273703	6.1019863004056	5.94104340268457	5.98903884776791	0.150917216059987	0.529285240652639	0.785578625527331
Merged-chr17-24206087-2	chr17	24205973	24206173	+	932.5	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_173186)	promoter-TSS (NM_173186)	-511.0	NM_001163850	224617.0	Mm.301585	NM_173186	ENSMUSG00000036473	Tbc1d24	9630033P11|C530046L02Rik|mKIAA1171	TBC1 domain family, member 24	protein-coding	3.7939422066692	3.69441748693379	3.38050265671194	3.8206241198638	4.06636004382586	3.6285970893051	3.96485226793895	3.93586608330633	0.637508013719525	0.187911203973239	0.486393381126994
Merged-chr4-47311660-4	chr4	47311556	47311756	+	777.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 39 of 39)	intron (NM_009928, intron 39 of 39)	-41566.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	4.50723998288867	4.13557046358236	3.98359824408217	4.1024711803335	4.2703963779036	4.35509005695249	4.29619233739713	4.18059220213209	0.214807631075527	0.59594803954443	0.824261809586168
Merged-chr9-106369101-4	chr9	106369051	106369251	+	861.212524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153459, exon 1 of 3)	exon (NM_153459, exon 1 of 3)	519.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	3.65851882072003	3.57385727318066	3.91362843005676	3.36517665533192	3.79510105225028	3.72120924116432	3.69887104679121	4.23426025061808	0.739150911152262	0.137249247281105	0.4120140092034
Merged-chr4-36020212-2	chr4	36020112	36020312	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 7 of 8)	L1Md_F|LINE|L1	-175008.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	3.09112384833058	3.20425603647633	2.69156314883811	2.48999971966542	3.04501974331917	3.20541718685836	3.0208449923346	3.03098396254704	0.716319160440643	0.294704958619655	0.606833640805257
Merged-chr16-30938844-4	chr16	30938744	30938944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142588.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	5.83172152323609	5.38343688269906	5.62076961302552	5.54160820777959	5.61191023801934	5.63131362265317	5.4856962560282	5.61680847034105	-0.0129775366863724	0.961766413016231	0.986287517870095
Merged-chr5-64315315-2	chr5	64315214	64315414	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 12 of 18)	intron (NM_001289514, intron 12 of 18)	84957.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	3.44293984588162	3.12006813528052	3.39499839971135	3.08809554824114	3.21191247692259	3.10088932040944	3.10887052726912	2.84812142306708	-0.725029118382815	0.226343510347888	0.534943876317438
Merged-chr1-171887303-4	chr1	171887186	171887386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 8 of 8)	intron (NM_001289470, intron 8 of 8)	-30176.0	NM_030710	30925.0	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	5.76852529216202	5.54571941370035	6.08627131584451	5.72643180955678	6.18457231540521	5.84101276382512	6.07475309534964	6.38237968723912	0.554501112342472	0.03610153514138	0.188871928615569
Merged-chr3-154597152-4	chr3	154597067	154597267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168358)	promoter-TSS (NM_001168358)	-30.0	NM_001357673	12972.0	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	6.60356340605052	6.92427231756013	6.62090372508571	6.81834404437339	6.59414173077985	6.84496362950271	7.06106606334286	6.6940512373225	0.0686265633084939	0.753098642085393	0.902748580768063
Merged-chr11-98193124-7	chr11	98192981	98193181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013634)	promoter-TSS (NM_013634)	-175.0	NM_013634	19014.0	Mm.12926	NM_013634	ENSMUSG00000018160	Med1	AI480703|CRSP210|DRIP205|PBP|Pparbp|TRAP220|TRIP-2|l11Jus15	mediator complex subunit 1	protein-coding	5.50833438995161	5.72648311812606	5.59459131515602	5.36134395698547	5.94861183021398	6.103755016921	5.74447024031827	5.74568613262592	0.583049822757153	0.028556899550159	0.162196900181996
Merged-chr7-47052647-6	chr7	47052582	47052782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026436, intron 1 of 2)	intron (NM_026436, intron 1 of 2)	2042.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	4.56960091262606	4.37783290398038	4.96214005205292	4.79471345679157	4.58179619773534	4.61546771159725	4.6295189316042	4.72411594293717	-0.132910797172214	0.714176421619701	0.885697313573214
Merged-chr7-12949651-4	chr7	12949570	12949770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16168.0	NM_001362140	243834.0	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	9.19433924435958	9.16577939023642	9.18646503147669	9.33583932265939	9.11150027311244	9.07992348872288	9.19479661058617	8.82456154494461	-0.202763180183311	0.178485925242783	0.474282728191057
Merged-chr3-41402029-4	chr3	41401932	41402132	+	912.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91167.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	4.81069974113764	4.39491947287294	4.84438742330758	4.91348936230872	4.0219014388017	4.46183970564288	4.44901763014529	4.55071761964465	-0.865417680173834	0.029277765034948	0.164575717829625
Merged-chr10-98897724-4	chr10	98897616	98897816	+	975.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16926.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	4.9978069722381	4.6464833875802	4.93105957591143	5.10287971465782	4.92074067639305	4.61101683668485	4.83656894977896	5.14962789971406	-0.0851281850824551	0.805338121036184	0.925171083261684
Merged-chr8-70760402-3	chr8	70760274	70760474	+	892.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183170, exon 2 of 5)	exon (NM_183170, exon 2 of 5)	547.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	3.40974073129789	3.08066511336944	3.41024025150697	3.16274117760521	3.17879748475913	3.09712580673157	3.11192851539846	3.55386153624982	-0.0690471725332678	0.903518977949636	0.964287824952031
Merged-chr3-92081224-7	chr3	92081029	92081229	+	896.719055	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008508, exon 2 of 2)	exon (NM_008508, exon 2 of 2)	2013.0	NM_008508	16939.0	Mm.1121	NM_008508	ENSMUSG00000043165	Lor	AI036317|S77319	loricrin	protein-coding	3.5640664428278	3.44211536598193	3.37944545721957	4.02760199532769	3.70604966153777	3.62152982499284	3.80799938460638	3.95582594863649	0.378996620115876	0.478528833403557	0.7545550478271
Merged-chr19-37689666-4	chr19	37689555	37689755	+	963.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001105201, intron 4 of 5)	intron (NM_001105201, intron 4 of 5)	3975.0	NM_001105201	546726.0	Mm.457750	NM_001105201	ENSMUSG00000062432	Cyp26c1	EG546726	cytochrome P450, family 26, subfamily c, polypeptide 1	protein-coding	5.30941684497713	4.95456488916392	5.28160831046984	5.40142915283241	5.27771952582174	5.33315205095098	5.00054226384936	4.65473735320233	-0.287821492149241	0.394727128672491	0.693696530342229
Merged-chr3-142563684-3	chr3	142563584	142563784	+	764.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355403, intron 3 of 11)	intron (NM_001355403, intron 3 of 11)	3328.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	3.1985479575713	3.14661589207106	3.47292810152643	3.31057080672371	3.05276147141632	3.24760460641177	3.24642382739904	3.47081932050973	-0.110003491622559	0.842350725638491	0.940176660530117
Merged-chr5-31942817-3	chr5	31942686	31942886	+	806.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 7 of 11)	intron (NM_144541, intron 7 of 11)	-193686.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	3.83682255385219	3.774213754111	3.6552143359712	4.15528125638308	2.9407944733003	3.08000826640613	3.10933889208781	2.96420455679479	-3.74142156720261	3.37749339934669e-07	1.29599246723503e-05
Merged-chr13-41331815-4	chr13	41331731	41331931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 3 of 7)	intron (NM_001111324, intron 3 of 7)	27170.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	6.09522248904004	5.9497991964637	5.85536289341949	6.36954840087346	5.77573462641026	5.85233591928248	5.94016470701625	5.9881818579432	-0.339398889998599	0.190155653984542	0.489249567864294
Merged-chr2-51147090-3	chr2	51147001	51147201	+	991.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028810, intron 2 of 4)	intron (NM_028810, intron 2 of 4)	2010.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	4.86210124996648	4.36569960988882	4.36501326680371	4.45670761825185	4.16281148386227	4.30486200183987	4.38776605336569	4.12389484127102	-0.659834180787676	0.098545779617353	0.34406532007561
Merged-chr6-56923920-4	chr6	56923844	56924044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026004)	promoter-TSS (NM_026004)	-12.0	NM_001360963	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	8.72234623854992	8.67407521129727	8.61383807825	8.68229968370727	8.71614567596368	8.55988905827923	8.79636551736068	8.62656777506659	0.00706301510215383	0.961216847643374	0.986114717027689
Merged-chr11-87987146-3	chr11	87987078	87987278	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168472)	promoter-TSS (NM_001168472)	355.0	NM_026556	68097.0	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	5.07916225258434	4.65741813280711	5.50468692676743	4.4902966689672	4.78912906340907	4.8107035012452	5.05474213303375	5.04449542274846	-0.104642594453682	0.790772165523518	0.918885370783943
Merged-chr1-184063182-4	chr1	184063092	184063292	+	716.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	28811.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	3.81688257720375	3.42799180491922	3.54553446872329	3.77436012968459	3.98053304196606	3.93800762536235	3.53279657096287	3.95415184625899	0.611549066769154	0.209841291687199	0.514370593739346
Merged-chr4-116627972-4	chr4	116627873	116628073	+	969.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016777)	promoter-TSS (NM_016777)	-22.0	NM_016777	50927.0	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	5.59495348721269	5.78415127359134	5.04260052755538	5.43144948194154	5.66067107808891	5.74424827606417	5.94951578086838	5.53798437199816	0.401153924439172	0.17751590420001	0.472935005616369
Merged-chr6-136805085-4	chr6	136804994	136805194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175652)	promoter-TSS (NM_175652)	-663.0	NM_175652	320332.0	Mm.246720	NM_175652	ENSMUSG00000096010	Hist4h4	B130044J01Rik	histone cluster 4, H4	protein-coding	6.71310513409731	6.31518512668282	6.627823913767	6.74276491766409	6.31792053271963	6.40245839653364	6.36570336710409	6.52989405628807	-0.313583224104492	0.159452488111991	0.446995732792069
Merged-chr5-96917958-6	chr5	96917866	96918066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3306.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	5.48240282379612	5.63280004368487	5.97544855900972	5.75508327791001	5.41988774978767	5.66105260344725	5.96487255231255	5.90859526270125	0.0385319068608841	0.892259752059592	0.959628855154721
Merged-chr14-12993836-3	chr14	12993741	12993941	+	864.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-170762.0	NM_001359919	27062.0	Mm.260881	NM_012061	ENSMUSG00000054423	Cadps	AU067781|CAPS|CAPS1|mKIAA1121	Ca2+-dependent secretion activator	protein-coding	4.39298107669707	4.2047301946562	4.22475114090448	4.63544874024888	4.53450601623112	4.15461087483176	3.96091455821045	3.67072555933186	-0.614780794825864	0.200813381109216	0.502962653646253
Merged-chr19-42080163-4	chr19	42080080	42080280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198108, intron 1 of 4)	MLT1H|LTR|ERVL-MaLR	6190.0	NM_198108	226123.0	Mm.259441	NM_198108	ENSMUSG00000049670	Morn4	-	MORN repeat containing 4	protein-coding	6.0840678527967	5.96654425453705	6.36311886279649	6.07154296727911	5.3827858759456	5.65114712332992	5.31184924390669	5.93662062157226	-0.875632864092022	0.00178426854463867	0.0213952915665154
Merged-chr18-34989486-4	chr18	34989374	34989574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35123.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	5.56994161314066	5.69675864476808	5.33486998622214	6.07797618587344	5.60228614950005	5.30585260492836	5.54288480728513	5.6452400683939	-0.317568503931469	0.297225677641585	0.609367580883809
Merged-chr5-113771707-6	chr5	113771658	113771858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151532, exon 1 of 17)	non-coding (NR_151532, exon 1 of 17)	642.0	NR_151532	53890.0	Mm.29594	NM_016926	ENSMUSG00000018974	Sart3	AU045857|mKIAA0156	squamous cell carcinoma antigen recognized by T cells 3	protein-coding	5.72887527186194	5.25686529772122	5.40648789296343	5.02772398339991	5.37687413391524	5.49325855175684	5.0243496956836	5.51128728123057	0.00205181084220522	0.994959754954946	0.998190746524986
Merged-chr18-77705002-3	chr18	77704870	77705070	+	702.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178670, intron 1 of 4)	intron (NM_178670, intron 1 of 4)	9040.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	3.5766191307068	3.34390899268999	3.62575605070606	3.24052348644515	3.25219070837823	3.41600974516562	3.22819863105416	3.57498862406833	-0.258189065825994	0.631221296273057	0.843290989835019
Merged-chr17-86962557-4	chr17	86962456	86962656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145491)	promoter-TSS (NM_145491)	-555.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	7.10690803448851	6.99699090999503	6.24955999851462	6.83690339657213	6.69340196011041	6.74906945896732	6.60292220900426	6.92787953019057	-0.129275127499212	0.597019736612373	0.825047231334778
Merged-chr16-30512589-1	chr16	30512489	30512689	+	564.0	f0_balb.idr	3' UTR (NM_172614, exon 10 of 10)	3' UTR (NM_172614, exon 10 of 10)	37989.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	3.37742437567819	3.00643012651158	3.2226994052771	3.13875775735057	3.07368982894367	3.27675173344355	2.97071471266406	3.10503283096143	-0.317370402602474	0.579066553206884	0.815233759185512
Merged-chr12-32379537-4	chr12	32379450	32379650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162903, exon 1 of 1)	exon (NM_001162903, exon 1 of 1)	761.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	6.68792858678431	6.93379687520371	7.03126450376348	6.35872683683818	6.85583372630564	6.52191802379673	6.82387399925371	6.69937461240131	-0.0399766302333851	0.867537863591656	0.950331199983684
Merged-chr8-94861493-3	chr8	94861391	94861591	+	789.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009090, intron 4 of 8)	intron (NM_009090, intron 4 of 8)	4041.0	NM_009090	20021.0	Mm.292492	NM_009090	ENSMUSG00000031783	Polr2c	33kDa|RPB3|Rpo2-3|mRBP31	polymerase (RNA) II (DNA directed) polypeptide C	protein-coding	3.69547243337724	3.60493260591114	4.10162560138447	3.781595020616	3.61366073566915	3.37394757442564	3.82947129983557	3.74588189475066	-0.465570174840993	0.350373033937361	0.657974360410189
Merged-chr13-17696445-3	chr13	17696372	17696572	+	712.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025479, intron 1 of 1)	intron (NM_025479, intron 1 of 1)	1059.0	NM_025479	66308.0	Mm.291109	NM_025479	ENSMUSG00000012429	Mplkip	2810021B07Rik|C330007M08Rik|Ttdn1	M-phase specific PLK1 intereacting protein	protein-coding	2.96667127498282	2.87544530494521	3.03024520400015	2.76754076093494	3.26835198004614	3.14095171746111	3.13567886820085	3.2015231041703	1.19864502298935	0.0348867414609245	0.184896436484
Merged-chr2-101678434-4	chr2	101678340	101678540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009424)	promoter-TSS (NM_009424)	20.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	6.98331704835537	6.72808292395023	7.1047340707352	7.09467781453566	6.91667331065826	6.94192448720518	7.2493965909744	6.87444476610052	0.01773034662452	0.931940816509778	0.975397745055384
Merged-chr10-75872932-4	chr10	75872762	75872962	+	856.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12G|LTR|ERVK	-12612.0	NM_010798	17319.0	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding	3.93359906187733	3.45793622630708	3.74481458936091	3.72128123553831	3.51848600335462	3.81162373637137	3.77870431570936	3.74263996344428	-0.0318094058593001	0.947147553959365	0.981092389800989
Merged-chr11-69124264-4	chr11	69124137	69124337	+	946.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_033041)	TTS (NM_033041)	-2140.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	4.75730294687144	4.97362016531238	3.9550228319997	4.281069948042	4.86257188387257	4.5712535181807	4.76941016395052	4.48082626677537	0.288952627368098	0.510267175984979	0.774651437943838
Merged-chr12-81915773-3	chr12	81915666	81915866	+	700.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 5 of 35)	intron (NM_018814, intron 5 of 35)	55736.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	3.50888048308488	3.775661382013	3.62013500100236	3.43449112119694	3.54484525425332	3.6253529753326	3.6055776688545	3.76794832876778	0.163986204643343	0.734305981934681	0.894973967498754
Merged-chr11-69245878-4	chr11	69245803	69246003	+	960.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8881.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	4.88368747729117	4.91730138361627	4.39564392871809	4.8187506881899	4.72490209650472	4.6685533327552	4.92618151049149	4.66009791862428	-0.054110354486723	0.878000687677251	0.954314763971155
Merged-chr18-36679406-4	chr18	36679302	36679502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357512)	promoter-TSS (NM_001357512)	-36.0	NM_146085	225372.0	Mm.89673	NM_146085	ENSMUSG00000006050	Apbb3	Fe65l2|Rirl2|TR2S	amyloid beta (A4) precursor protein-binding, family B, member 3	protein-coding	8.16510013098627	8.15719403738806	7.94753888715067	7.99629763901415	8.27045981820889	8.40352842324368	8.20428976945622	8.16103406330175	0.248917012087054	0.119711033101686	0.382945109215088
Merged-chr16-23311877-3	chr16	23311783	23311983	+	946.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	L2|LINE|L2	21413.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	4.23042384514061	4.48218413261727	4.4461500228574	4.16249234185045	4.04405412652981	4.20819141426405	4.60720295413579	4.27441186416823	-0.0849154969128126	0.836081580851026	0.93760163289947
Merged-chr5-77358536-3	chr5	77358432	77358632	+	821.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008048, intron 1 of 4)	intron (NM_008048, intron 1 of 4)	48048.0	NM_153798	231329.0	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	3.15743019519715	3.66039779332573	3.89696636363076	3.82606001154451	3.5657564127626	3.46444342068089	3.45894083389651	3.41200259182427	-0.628843183343749	0.256248730137716	0.567812876264657
Merged-chr1-78489199-4	chr1	78489123	78489323	+	974.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102757)	promoter-TSS (NR_102757)	-326.0	NM_011811	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	4.60786896162692	4.47692099993538	4.4471588500416	4.56491184125414	4.52986194959728	4.28665900700446	4.72793720211731	4.48663546401809	-0.0178836845071173	0.96089213747605	0.986028483619322
Merged-chr15-67479484-4	chr15	67479382	67479582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	252713.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	5.71855594875069	5.92688470231342	4.7689314410669	5.61309474859734	5.48096238776299	5.52185162168912	5.318652907649	5.48807379509765	-0.212088938231628	0.538001301378234	0.79127189500788
Merged-chr9-46106396-6	chr9	46106273	46106473	+	807.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	93553.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	2.98609720977851	3.47269346993607	3.37162589512616	3.25988906260451	3.42273741511536	3.36778922768265	3.24360071398182	3.62113051217345	0.476198454121958	0.387463302165034	0.688311130697937
Merged-chr1-106020043-3	chr1	106019941	106020141	+	863.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 8 of 12)	intron (NM_001122675, intron 8 of 12)	29635.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	3.78199218057651	3.79699142973033	3.62512627430169	3.53600146389834	3.43887808007982	3.95242075809379	3.55466303282783	3.87527456760398	0.0978284043755921	0.842684249443694	0.940251336238462
Merged-chr6-5208009-4	chr6	5207918	5208118	+	990.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14072.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	6.13551987117177	5.85806563354594	6.08157814417359	6.4261768891325	4.85117893757659	5.37937154695546	5.37518664903093	5.39853541326231	-1.51389361588029	4.66805572109059e-07	1.74235730556637e-05
Merged-chr13-100859272-4	chr13	100859142	100859342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25815.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	7.29975214208193	7.3722657311095	7.19190050721637	7.04142691941754	7.48638690650355	7.50892018753318	7.59235110265137	6.89299006334078	0.233915648483272	0.2807936146007	0.592968868856087
Merged-chr13-112811871-4	chr13	112811769	112811969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008903, intron 1 of 5)	MIRc|SINE|MIR	11092.0	NM_008247	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	5.34528642443596	5.42613469822441	5.41114517199991	5.63571417781373	5.7478428531003	6.03478395380964	5.73898672069542	6.28519012813282	0.808202281722274	0.00431452342329436	0.0425240892762793
Merged-chr15-27672347-4	chr15	27672271	27672471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	9171.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	4.98457798458873	4.90377970170176	5.01789819251433	5.03016811025778	5.02071613245723	4.597262066351	4.49349058495752	4.94872097729417	-0.381006489565379	0.269915546334118	0.581715525858122
Merged-chr4-131825997-3	chr4	131825906	131826106	+	883.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083119, intron 1 of 30)	intron (NM_001083119, intron 1 of 30)	12272.0	NM_011214	19273.0	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	3.61722080688822	4.19820581490744	3.7327661298885	3.75870812908756	4.14743426093592	3.90685385249005	3.60463094920206	3.83637544985574	0.137523170002053	0.778889113806669	0.913802853320572
Merged-chr8-70761075-4	chr8	70760988	70761188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183170)	promoter-TSS (NM_183170)	-167.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	9.09390187153498	9.13766442631339	9.06143142159991	9.06798015794792	9.1248258714865	9.31286149638947	9.09137303062532	9.28975500963736	0.143599662941054	0.304909343568734	0.617425354648188
Merged-chr2-168117348-4	chr2	168117236	168117436	+	826.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	36332.0	NM_021409	58220.0	Mm.292834	NM_021409	ENSMUSG00000044641	Pard6b	AV025615|Par6b	par-6 family cell polarity regulator beta	protein-coding	4.06862851291899	4.1699422359132	3.68834270603355	3.69416239093433	4.27157763422007	4.04233603022971	4.22570669456338	4.24269696787564	0.757739771678905	0.0833886667072541	0.313866104783229
Merged-chr13-52636360-4	chr13	52636267	52636467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 9 of 13)	intron (NM_011518, intron 9 of 13)	39485.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	8.09147509056717	7.67382403121908	7.49502604546864	7.49952669896685	7.7857700850171	8.06119547174518	7.74999507445136	7.54673861147448	0.117239994231289	0.578584429708885	0.81482848170331
Merged-chr5-110023915-2	chr5	110023815	110024015	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR46B|LTR|ERVK	27388.0	NM_145563	69504.0	Mm.441438	NM_145563	ENSMUSG00000066613	Zfp932	2310001H12Rik|Znf431	zinc finger protein 932	protein-coding	2.91627464911264	3.23649692840101	2.80135942040215	2.68936851943467	2.4146502170977	2.48486909553407	2.45333800834166	2.45848768381636	-2.77742206175495	0.000777472155794837	0.010983335784188
Merged-chr8-45899916-4	chr8	45899825	45900025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016798, intron 2 of 6)	intron (NM_016798, intron 2 of 6)	14440.0	NM_016798	53318.0	Mm.282900	NM_016798	ENSMUSG00000031636	Pdlim3	AI463105|ALP|Actn2lp	PDZ and LIM domain 3	protein-coding	5.39383629499244	5.4052460026574	5.78739003846796	5.73181101108203	5.46962496040813	5.57046302485161	5.80177305603387	5.53557368722308	-0.00754012132907062	0.978590237117523	0.992449975361913
Merged-chr6-82764320-4	chr6	82764210	82764410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	10144.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	8.01798071058982	8.11998247425784	7.97231433830032	7.8855304777608	7.80901342337305	7.86689834661756	8.03244692794616	7.77531036826884	-0.16164081702493	0.329744164154365	0.641087647437753
Merged-chr9-119352266-4	chr9	119352205	119352405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5076.0	NM_001199568	102448.0	Mm.219497	NM_001033209	ENSMUSG00000035769	Xylb	AI132223|AI327421	xylulokinase homolog (H. influenzae)	protein-coding	4.99920578422253	5.29331265950905	4.96279617539549	4.80577866785317	5.26104197940874	5.55040738742162	5.50409451600199	5.03283380770838	0.615339544838959	0.0557004381040575	0.247021899302723
Merged-chr15-31447409-3	chr15	31447298	31447498	+	757.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145852, intron 3 of 4)	intron (NM_145852, intron 3 of 4)	6291.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	3.90870029161646	4.14169712373597	4.00657623919121	3.93964053892092	3.87201272153557	4.12939279017463	3.78919205056487	3.85552998993222	-0.237380893026135	0.58467544222518	0.817725463637045
Merged-chr10-21502549-3	chr10	21502414	21502614	+	910.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90631.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	4.06330856039875	3.98318645968789	4.15399369965594	4.50165353477414	4.11841415875173	3.86798720256384	3.79217345521653	3.86010719627336	-0.750724564606692	0.0998796810069641	0.346689769068576
Merged-chr7-43532492-4	chr7	43532301	43532501	+	815.614563	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111058, intron 2 of 6)	intron (NM_001111058, intron 2 of 6)	770.0	NM_001111058	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	2.75249697055206	2.95446392689427	2.82159594044788	2.92171542890146	2.99100730821393	3.05752487037295	2.99752494100364	3.06396182752605	0.663725870724162	0.259569167315418	0.571396571681358
Merged-chr10-98894612-4	chr10	98894511	98894711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B2|LTR|ERVL	-20031.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	7.20108886921027	6.8251894035174	7.20233595758729	7.18301422065281	6.97558354378216	6.86983461328108	7.15547872773042	7.0369281517374	-0.137316193714533	0.491996761715124	0.763292011816059
Merged-chr2-157367006-4	chr2	157366918	157367118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026968)	promoter-TSS (NM_026968)	-576.0	NM_026968	69161.0	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	7.67529748716258	7.99868645031637	7.7097476789001	7.49910427614119	7.65923410305197	8.14481780897141	7.47843130680784	7.77599147283354	0.071966454345617	0.733142662679848	0.894394844323328
Merged-chr5-113402874-4	chr5	113402776	113402976	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45582.0	NM_001012726	503692.0	Mm.348794	NM_001012726	ENSMUSG00000053873	Aym1	-	activator of yeast meiotic promoters 1	protein-coding	5.02517972394708	5.02666111452199	5.95797967055696	5.58322589273301	4.65603767860013	4.56160098752309	4.60400837615135	4.71255055567459	-1.60949283488859	2.31493338863224e-05	0.00057978410861877
Merged-chr1-132155972-4	chr1	132155872	132156072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16287.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	5.33840431635642	5.54500931025038	5.49219320399473	5.25318340511612	5.84940675676687	5.82856085183938	5.74572771629165	5.81631184924187	0.697197557215117	0.00769161660789129	0.0653587375882142
Merged-chr14-33193997-4	chr14	33193893	33194093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8927.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	6.79083720268788	6.79767503498379	6.7180205797756	7.14791678474029	6.84051930591059	6.99702376639376	6.88015434885562	6.88395075093998	0.00742011235960305	0.971772187929754	0.989737326894157
Merged-chr11-34776190-4	chr11	34776085	34776285	+	931.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	7720.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	4.73193792032227	5.20993434132959	4.92547918955467	4.69004767307751	5.02865021899295	5.13427829543156	5.24177183991925	4.68746311492507	0.273883149898122	0.430806129284993	0.721309079893587
Merged-chr4-132922745-4	chr4	132922627	132922827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163792)	promoter-TSS (NM_001163792)	-176.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	8.91795305598016	9.13043157661938	8.52600141041418	8.60942442423568	8.92319875339201	9.19733707964168	8.86827414160401	8.86462832728346	0.189084829789676	0.312822802071313	0.624724039858425
Merged-chr4-123750362-4	chr4	123750269	123750469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023423)	promoter-TSS (NM_023423)	-70.0	NM_023423	68050.0	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	8.18683944097028	8.18186690342918	7.66890455921104	7.7952636035478	7.97883544694397	8.07918929603317	7.94138943160237	8.13533445746989	0.0765403361846138	0.68492370584614	0.870968079022822
Merged-chr18-64511112-4	chr18	64511034	64511234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142950, intron 5 of 14)	intron (NM_001142950, intron 5 of 14)	5423.0	NM_027350	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	6.25038198032635	6.17198902877966	5.99684574750704	6.38113765591385	6.40879456420373	6.0531553648627	6.65153413947808	6.42575322796627	0.277822204672103	0.255343805389009	0.566891760200376
Merged-chr8-95142610-4	chr8	95142472	95142672	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145831)	promoter-TSS (NM_001145831)	-32.0	NM_001145831	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	5.30778548603672	4.87521990383457	4.90438870593556	4.97389085356903	4.92606936425537	5.0045124550033	4.8810518334656	5.00648318502146	-0.131755045620045	0.681443971327456	0.869396505442043
Merged-chr1-74304609-4	chr1	74304509	74304709	+	961.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027154)	promoter-TSS (NM_027154)	-273.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	4.69260225593631	4.66836283065102	4.16846997342673	4.52783481120272	4.59732271512089	4.44963620674675	4.67095116162505	4.49703082619706	0.0605957260550414	0.870939076038449	0.951515750732959
Merged-chr19-7569866-2	chr19	7569766	7569966	+	895.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362425, intron 2 of 4)	intron (NM_001362425, intron 2 of 4)	12381.0	NM_001362425	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	3.88634921794374	3.46587567269551	3.55354959953302	3.28003497981903	3.0894284764119	3.55763546846843	3.59153342188403	3.70494343993875	-0.182597428602714	0.745348917150589	0.899487248831095
Merged-chr1-155076129-4	chr1	155076025	155076225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	7139.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	6.68485495927722	6.47953250119935	7.01351691495731	6.85955333862024	6.68889458992577	6.16616120471342	6.69586676803007	6.86210834181908	-0.204137593353158	0.401209934491071	0.698869974053897
Merged-chr8-53639026-4	chr8	53638922	53639122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146208)	promoter-TSS (NM_146208)	43.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	6.69474617916081	6.74489851473498	6.29836062368651	6.8807692193466	6.54216561098565	6.45710246137269	7.31325103422793	6.39142553676441	0.0801338914595831	0.775270471812599	0.912320643528997
Merged-chr4-10965133-6	chr4	10964995	10965195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42524.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	5.54111685368243	5.7930814985245	6.06436120948098	5.63384024542883	5.4102024562372	5.74564791991225	5.72005521667819	5.35735914195938	-0.340600939374884	0.232932781985383	0.542529132777439
Merged-chr6-146640795-4	chr6	146640714	146640914	+	842.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1765.0	NM_025315	108098.0	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	4.27396313940034	4.27145433027319	4.27463517942251	4.05938530900474	4.0456103408188	4.16861955492766	4.02790273219027	4.18495639528364	-0.275341711245928	0.496171232953357	0.766144699012669
Merged-chr19-46137370-4	chr19	46137267	46137467	+	918.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008852, exon 2 of 4)	exon (NM_008852, exon 2 of 4)	5468.0	NM_007703	12686.0	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	4.10627524803397	4.51061437207777	4.10686350366218	4.35275326796726	4.35109800952445	4.01200429394075	4.31595837420312	4.33284641483995	-0.0574195271963984	0.888012554854831	0.957984929403032
Merged-chr3-135681499-3	chr3	135681393	135681593	+	742.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	10054.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	3.06519230600898	3.25552561185276	3.53060089735251	3.52142756405973	3.36947322525942	3.30889472599838	3.36212335019537	3.37333136533843	-0.0418833945127881	0.938787976498187	0.977799606257435
Merged-chr19-45058466-4	chr19	45058354	45058554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10878.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	7.23456957979584	7.32124387566158	7.04948896261779	7.0595057335624	7.31867581199784	7.39082414704755	6.92329698661584	7.42102517945477	0.150252583264481	0.457033546440501	0.74032112334642
Merged-chr6-124965404-6	chr6	124965259	124965459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355541, exon 1 of 8)	5' UTR (NM_001355541, exon 1 of 8)	179.0	NM_012003	26894.0	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e|SGN7a	COP9 signalosome subunit 7A	protein-coding	6.77555641728113	7.15044117412567	7.22745496788718	6.71514542184643	6.59775739578899	6.70271050126275	6.24300497181277	6.86805138332069	-0.507239396643302	0.0361978761505017	0.18911900236169
Merged-chr6-83475690-4	chr6	83475581	83475781	+	993.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19289.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	5.63864215875312	5.30527504840601	5.28835396096879	5.84694796382447	4.89256786200766	5.26493559716598	5.19880839699233	5.40343371143055	-0.651636301706606	0.0428386283207438	0.21047342379956
Merged-chr3-116162331-4	chr3	116162242	116162442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32654.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	6.57892839183427	6.10956728429639	6.93777448322009	7.26208586584228	5.95248974448826	6.06404385644888	6.21645078778692	6.07395860125561	-1.07260736459568	0.000247783032395096	0.00432702366605754
Merged-chr3-104968153-4	chr3	104968069	104968269	+	988.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6460.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	4.92643240635304	5.2224331899432	4.81259969176969	5.12735666228913	5.23563400519752	5.06522482931775	5.0731283429408	4.76895147603126	0.0239841391171555	0.941688764128365	0.97898049638905
Merged-chr5-64224917-3	chr5	64224812	64225012	+	771.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-5445.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	3.5210221707748	3.48939407958011	3.6778800877978	3.44609838559546	3.47466396169509	3.45751110944335	3.79959301076436	3.51958317911421	0.127148150276257	0.796387061222688	0.921107972290046
Merged-chr7-34167952-4	chr7	34167841	34168041	+	909.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016682, intron 1 of 16)	MIR|SINE|MIR	588.0	NM_016682	50995.0	Mm.27560	NM_016682	ENSMUSG00000052997	Uba2	AA986091|Arx|Sae2|UBA1|Ubl1a2|Uble1b	ubiquitin-like modifier activating enzyme 2	protein-coding	4.52425054344343	4.43363521318017	4.60101413684273	4.51737031666608	4.4489982309986	4.34298031579261	4.24697800669888	4.39886012526991	-0.353824148744415	0.336101185956043	0.646244323954596
Merged-chr9-59551230-4	chr9	59551112	59551312	+	971.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	11672.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	4.35665262642018	4.93005428178768	4.63473306559801	5.23275770814953	4.57533084383361	4.7258690024784	4.93943545683511	4.78839163253837	-0.188891918085774	0.631655217933143	0.843531757419958
Merged-chr7-97371652-4	chr7	97371591	97371791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199035)	promoter-TSS (NM_199035)	74.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	6.16258752174192	6.46359762630753	6.63352213188382	6.21530760356227	6.3988049168003	6.55238636644741	6.34400598642907	6.31749817720276	0.0465046155385089	0.840848584404053	0.939428850539057
Merged-chr10-80156188-4	chr10	80156087	80156287	+	818.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347117, intron 7 of 7)	intron (NM_001347117, intron 7 of 7)	6505.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	4.4936992112895	4.65272189045057	4.41008175648966	4.13307207849716	4.30179577999368	4.58377154473507	4.69520631344797	4.36303079651837	0.153478188361601	0.697262733108605	0.877685183651429
Merged-chr1-176797454-3	chr1	176797355	176797555	+	938.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099637, intron 1 of 19)	intron (NM_001099637, intron 1 of 19)	9669.0	NM_001099637	545389.0	Mm.269991	NM_001024722	ENSMUSG00000057335	Cep170	4933426L22Rik|A330004A13Rik|AI195353	centrosomal protein 170	protein-coding	4.37469761001465	3.70439652128779	3.95341532836913	4.54943402711516	3.89004932702911	4.23639943044052	4.18573679169432	4.62469593672613	0.149011920882865	0.763900276206842	0.907492132891533
Merged-chr8-83131446-1	chr8	83131346	83131546	+	676.0	f0_balb.idr	Intergenic	Intergenic	-33906.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	3.20004669264675	3.47785050570684	2.99568553609826	3.46260369148799	3.50679337991223	3.54624693518943	3.36476482351933	3.26066914756352	0.403460053704493	0.474965488732235	0.75199957250939
Merged-chr1-131867252-4	chr1	131867141	131867341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144875)	promoter-TSS (NM_144875)	-36.0	NM_144875	226422.0	Mm.34027	NM_144875	ENSMUSG00000026433	Rab29	Rab7l1	RAB29, member RAS oncogene family	protein-coding	6.73979714357048	7.2360190217684	6.55693390129258	6.92986983654066	7.12862919882551	7.26907909991026	7.45514414712067	7.19985893420951	0.504723442255305	0.0223568421029715	0.137909495107671
Merged-chr17-28313461-4	chr17	28313389	28313589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163820)	promoter-TSS (NM_001163820)	-41.0	NR_028297	72775.0	Mm.201859	NM_028348	ENSMUSG00000007570	Fance	2810451D06Rik|AI415634|AW209126	Fanconi anemia, complementation group E	protein-coding	8.36074273723275	8.185771155529	7.84554212595592	8.03110980742784	8.13162460164302	8.08405870523703	8.16397044082023	8.09350308433393	0.00233399612006067	0.98925871907776	0.995679388648698
Merged-chr3-65380736-4	chr3	65380632	65380832	+	894.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026155, exon 5 of 5)	3' UTR (NM_026155, exon 5 of 5)	11821.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	4.66062476082632	4.6211064685016	4.50019637677056	4.90512759446743	4.28824186434137	4.49361708841959	4.52179667094278	4.86550354564245	-0.315762181073045	0.407762918268468	0.703940160545009
Merged-chr16-57339643-4	chr16	57339558	57339758	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	-13619.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	4.82437778078544	4.85665985645795	4.86163265971579	4.6673906912179	5.13257905643046	5.20016866196867	4.8021295481113	4.33535457005009	0.236834958727446	0.525515504961218	0.783282758405079
Merged-chr19-37554168-4	chr19	37554120	37554320	+	911.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175353, intron 1 of 21)	intron (NM_175353, intron 1 of 21)	3802.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	3.64738342979744	3.89204597834211	3.85295391141188	3.37002466540587	3.75755101085743	3.70906762646365	3.78841711564608	3.80239763567448	0.212897576206439	0.661383518441079	0.859384613734741
Merged-chr2-11516287-7	chr2	11516199	11516399	+	908.301575	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	(CAGA)n|Simple_repeat|Simple_repeat	-14209.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	3.19043827149949	3.02365016966163	3.19089084848411	3.15288686815063	2.88995963192801	2.93056309830854	2.94861042250917	2.9569799107606	-0.904584929150518	0.123227098076985	0.389185665057583
Merged-chr15-50779201-3	chr15	50779131	50779331	+	851.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	109818.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	3.13367917504225	3.459735785339	3.69552267874184	3.76887773526573	3.27822513532754	3.50236136549365	3.37578054432331	3.32752659783195	-0.5994461415813	0.279157508639223	0.591369431345506
Merged-chr6-49264039-4	chr6	49263946	49264146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347209)	promoter-TSS (NM_001347209)	6.0	NM_001347209	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	7.1687075373273	7.44902435459309	7.16994857512167	7.37894277155206	7.72889290687428	7.46100209072168	7.44701143651476	7.6594493026289	0.373061041042231	0.0447758717382173	0.216191953225788
Merged-chr8-14815843-3	chr8	14815732	14815932	+	941.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 9 of 15)	intron (NM_172910, intron 9 of 15)	-72704.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	4.29098835540006	4.22037358712961	4.33319523194627	4.3382090825705	3.89391993620597	3.96407761847374	3.99313214339563	4.48374167239253	-0.497687185782932	0.242141596838138	0.552815408523819
Merged-chr9-57557462-4	chr9	57557361	57557561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3483.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	6.20068072780431	6.15311067983144	5.70045407563409	6.2481377859237	5.82105071788271	5.64694699516165	5.67169264693834	5.82350073279868	-0.570222262539058	0.0294532983936923	0.16521092976129
Merged-chr12-31949502-4	chr12	31949402	31949602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177993, intron 1 of 8)	CpG	743.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	8.11875022224427	7.95274120725641	8.30939111189367	7.99418715537182	8.46377850288351	8.4481207842177	8.3028555607477	8.28737477780187	0.362504739327321	0.0276616666201092	0.158682283071627
Merged-chr5-3787712-3	chr5	3787620	3787820	+	937.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003909, intron 1 of 19)	MER68-int|LTR|ERVL	-14933.0	NM_001289529	70797.0	Mm.130148	NM_001003909	ENSMUSG00000040351	Ankib1	2310061P20Rik|4631416I11Rik|AW494740|C80642|mKIAA1386	ankyrin repeat and IBR domain containing 1	protein-coding	4.10618597860175	3.75960305324796	4.28297160178917	4.68168572696346	3.81595482648707	4.23250877764248	3.88729538619324	4.10429776956213	-0.638276815669105	0.18817207033102	0.486764836776109
Merged-chr19-6921330-4	chr19	6921222	6921422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007953, intron 1 of 6)	intron (NM_007953, intron 1 of 6)	486.0	NM_007953	26379.0	Mm.386776	NM_007953	ENSMUSG00000024955	Esrra	ERRalpha|Err1|Estrra|Nr3b1	estrogen related receptor, alpha	protein-coding	5.23875717550943	5.33468158187319	5.44511046194942	4.96293148732873	5.51466148783181	5.38275914423567	5.33436608093048	5.32811065307701	0.288285972487133	0.335077750319005	0.645462888418622
Merged-chr1-95604037-4	chr1	95603958	95604158	+	847.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009183, intron 4 of 4)	L1_Mus2|LINE|L1	63536.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	4.00936414616824	3.66489833241352	4.51302627941769	3.81046151390768	4.02441129708727	3.8090053797087	3.7892017656767	4.05414006390204	-0.283021383028272	0.56408144138314	0.8065801425543
Merged-chr13-113607594-3	chr13	113607489	113607689	+	675.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	10975.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	4.20439905137658	4.28901918526136	3.64080917777782	3.4875151337537	3.88208218260134	3.92935185925294	3.6836532343111	3.30902989394519	-0.645115073967792	0.253612557003475	0.564898241173811
Merged-chr10-81406836-6	chr10	81406664	81406864	+	801.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 6 of 8)	intron (NM_026756, intron 6 of 8)	-2811.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	3.08325271307952	3.09558767328191	2.94826421928414	3.1673019577555	3.26621578846515	3.19460872452165	3.1944356298103	3.64538370373046	0.94824487128478	0.0951412539715408	0.33750607109097
Merged-chr13-65113011-4	chr13	65112954	65113154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133680)	promoter-TSS (NM_133680)	-72.0	NM_133680	66631.0	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	6.73808564487722	7.00919679486095	6.81392324222042	7.05353121271311	7.21009565608745	7.16620453829157	7.16213291269156	6.87955003643469	0.264893317687307	0.188693236319124	0.487424999744471
Merged-chr5-121399735-2	chr5	121399628	121399828	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172722, intron 1 of 23)	B1F2|SINE|Alu	1746.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	3.36115677856801	3.49118138315513	3.47751067877373	3.30451105056394	3.82949457365913	3.34685379706318	3.40809338136449	3.67981840417046	0.612349508858544	0.232954957082843	0.542529132777439
Merged-chr8-46741181-4	chr8	46741048	46741248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	CpG	1403.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	6.35922023049393	6.40999932375077	6.46696092308564	6.68595092520894	6.4245863203685	6.38040721510984	6.65125274702566	6.60692035955103	0.0249873593381663	0.910205412413418	0.966671146059764
Merged-chr3-51789623-4	chr3	51789540	51789740	+	885.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	128461.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	4.31898214344685	4.28166513609905	4.31965786443893	4.43325918575661	4.16100371871909	4.11002443901488	4.12269954082574	4.13774613166908	-0.530664002735902	0.174512556571299	0.468988494457015
Merged-chr5-142441483-3	chr5	142441335	142441535	+	918.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-22496.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	3.66764048634124	3.66530558710685	3.66814785925947	3.67056091455418	3.61784009489898	3.73119414260222	3.54480910492781	3.86118565882206	0.0708276219021526	0.878851046151133	0.954708519232108
Merged-chr11-44586213-3	chr11	44586119	44586319	+	866.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126460)	promoter-TSS (NR_126460)	-98.0	NR_126460	75389.0	Mm.261421	NR_126460	ENSMUSG00000086501	4930597A21Rik	-	RIKEN cDNA 4930597A21 gene	ncRNA	3.70852811315896	3.52450647730579	3.94931249865339	3.73486538010171	3.86178553716521	3.52890771730896	3.6408764829994	3.94681667773251	0.0740856595501305	0.877449406477943	0.954164706824192
Merged-chr11-55148962-4	chr11	55148825	55149025	+	879.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172258, intron 2 of 10)	(TG)n|Simple_repeat|Simple_repeat	2781.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	3.24519446925867	3.43692161531482	3.57610274765854	3.37413975891794	3.52113867163304	3.41855638938699	3.29518315588409	3.41968396976902	0.0324219331976881	0.949645082220364	0.981984185023304
Merged-chr12-12222188-2	chr12	12222088	12222288	+	734.666687	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-39951.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	3.78094390903959	3.58690517669402	3.63113621474064	3.59798822241383	3.71763728537399	3.63656279265974	3.18553901140373	3.87019945686186	-0.0609468625814332	0.906662592779132	0.965374636270914
Merged-chr18-84085881-3	chr18	84085785	84085985	+	901.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081300, exon 1 of 2)	5' UTR (NM_001081300, exon 1 of 2)	677.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	4.0627656241463	4.05811327332015	4.31717512442858	4.39206106538124	3.8682220542385	3.74062110124085	4.09126202659579	3.80295808970078	-0.921416215290336	0.0371554888438786	0.192287798137592
Merged-chr6-35569000-4	chr6	35568919	35569119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29131.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	6.59205486483895	7.46111065680638	6.81849447371486	5.6454302536035	7.03300975564362	7.12576119391166	6.81066516876738	6.41259256294694	0.109954223902049	0.836699735738424	0.937953980810766
Merged-chr1-134106941-4	chr1	134106833	134107033	+	859.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4309.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	4.04980639233906	3.67900409323599	3.16896979816589	3.74686227819254	3.65852844543682	3.68885344640177	3.76876036333502	3.83093262365653	0.117998793306718	0.826419239477912	0.933439367057084
Merged-chr13-55430771-4	chr13	55430682	55430882	+	962.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-3978.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	4.52528209468474	4.56003718327325	4.38450238770083	4.57941442661168	4.92231887822938	4.94258516653176	4.9500957698702	5.00232407440671	0.895096006653491	0.00709378723142962	0.061486996559835
Merged-chr7-118712503-4	chr7	118712414	118712614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360794)	promoter-TSS (NM_001360794)	-29.0	NM_001360794	101565.0	Mm.23279	NM_182995	ENSMUSG00000033904	Ccp110	6330503K22Rik|AA415922|AI427129|AW557948|CP110|cep110	centriolar coiled coil protein 110	protein-coding	7.71888383568774	7.80126104019029	7.64352399546583	7.81654314998977	8.03491635013139	8.03071875220934	7.99444403317334	7.7871397501026	0.279710854388854	0.0903730254893817	0.32831427455258
Merged-chr14-54426331-4	chr14	54426197	54426397	+	966.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026851)	promoter-TSS (NM_026851)	-612.0	NM_026851	68836.0	Mm.248163	NM_026851	ENSMUSG00000010406	Mrpl52	1110047B07Rik	mitochondrial ribosomal protein L52	protein-coding	5.13987472381123	5.27264236536532	4.76017192973931	4.71920681069015	5.63366713641861	5.37924273534909	5.26928009023607	5.26262068392311	0.778077668838473	0.0169468032754354	0.114347707298965
Merged-chr17-57335434-4	chr17	57335321	57335521	+	974.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-23265.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	4.59010180266331	4.76739050617154	4.75318202181946	4.54801958122969	4.65741351971928	5.19601160320935	4.73067376492255	4.92749083554684	0.465271772797158	0.182906171292875	0.479697384481446
Merged-chr6-124415506-1	chr6	124415406	124415606	+	622.0	f0_c57.idr	promoter-TSS (NM_001277330)	promoter-TSS (NM_001277330)	349.0	NM_001360570	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	3.57792895724785	3.39701884886687	3.63362145237132	3.23238685789013	3.84291480408756	4.00203571754651	3.56425129891014	3.78407652172472	1.10877992358566	0.0244956554162248	0.14635912506266
Merged-chr19-9955057-4	chr19	9954962	9955162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25538.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	5.84148617317603	6.24139198171258	5.81994271203965	4.98698967738456	5.85961804378715	5.77304808834745	5.67133691330041	5.06327094504893	-0.271938620558822	0.466754880079639	0.746491290418458
Merged-chr7-97782019-4	chr7	97781904	97782104	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-6537.0	NM_001357365	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	4.82302823179042	4.68132124019951	4.82381276081735	4.97067142831367	5.09268765062699	4.92121440963964	4.87373540227293	5.02870658790138	0.292435746487021	0.365877743172951	0.670510957016407
Merged-chr17-56265119-6	chr17	56264949	56265149	+	962.305542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8256.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	3.62049993491938	3.69734471545678	3.62097535651488	3.30232445728298	4.10993208439485	4.26361729862417	3.78091399118068	4.55894455626739	1.83304399825691	0.000131933441701256	0.00256161768872169
Merged-chr7-125555212-2	chr7	125555099	125555299	+	987.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008700, intron 1 of 10)	MIRc|SINE|MIR	2917.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	3.32324196693342	3.19382167455775	3.03596301559579	2.89956795597182	3.13103282190707	3.20995187230498	3.08780325094189	3.21443167295425	0.188796666337982	0.740884279806887	0.89809586945461
Merged-chr4-138980996-1	chr4	138980896	138981096	+	646.0	f0_c57.idr	intron (NM_029857, intron 2 of 16)	ORR1F|LTR|ERVL-MaLR	8091.0	NM_029857	77056.0	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	1.95565528772312	1.91989760821772	1.95578820953132	1.75799136260556	2.70315006573632	2.37507075100073	2.32440155714635	2.51726704087935	5.95391376533031	1.06776592718214e-08	5.63398894965882e-07
Merged-chr1-43811169-4	chr1	43811067	43811267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026430, intron 1 of 14)	intron (NM_026430, intron 1 of 14)	16541.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	6.76152339902395	6.79831810799321	6.4676116836006	7.13260374454012	6.36420547075187	6.4576777612363	6.38115217680765	6.4803588270262	-0.593863330286306	0.0107936267879745	0.08345422128408
Merged-chr2-153032342-3	chr2	153032190	153032390	+	840.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001011732, exon 1 of 3)	exon (NM_001011732, exon 1 of 3)	438.0	NM_001011732	228787.0	Mm.376111	NM_001011732	ENSMUSG00000042631	Xkr7	AY534253	X-linked Kx blood group related 7	protein-coding	2.61234229576816	2.78919568366299	2.88406388551302	2.79774651325398	2.89844796352594	2.99223160795251	2.87372927969986	3.05425908870145	0.792911638092647	0.193853554581395	0.494171274799718
Merged-chr19-40661282-4	chr19	40661183	40661383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	1513.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	6.52555869211613	6.41457218676259	6.55828570279113	6.36109057002982	6.18628090016986	6.45698937759278	6.2672994632232	6.67241795636167	-0.0862479872068523	0.706761677207338	0.882215762445699
Merged-chr16-30587687-4	chr16	30587614	30587814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178069)	promoter-TSS (NM_178069)	-125.0	NM_178069	224092.0	Mm.567	NM_178069	ENSMUSG00000022538	Lsg1	5830465I20|AA409273|D16Bwg1547e	large 60S subunit nuclear export GTPase 1	protein-coding	5.40329342514694	5.57105464053379	5.62178574411358	5.15783607842279	5.72620283112822	5.91288461423312	5.04304584241048	5.37046916725078	0.202843614369672	0.53522005378795	0.789648104016425
Merged-chr12-24630415-4	chr12	24630304	24630504	+	858.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20967.0	NM_178357	194655.0	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	4.31601436878699	4.13985144033849	4.44542415959446	4.34001155402615	4.54867202601065	4.65581390363919	4.57686424591822	3.95343748981018	0.346897673878502	0.396487089582877	0.69519327480908
Merged-chr10-119047412-3	chr10	119047344	119047544	+	965.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152787, intron 2 of 3)	MTC|LTR|ERVL-MaLR	3055.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	3.37665517675618	3.81142509812576	3.92510945033783	3.37514681680971	4.22808665659347	4.14768212803333	4.17505381269433	4.19237346448953	1.55415983412924	0.000927207506514908	0.0126608692842484
Merged-chr1-60916358-4	chr1	60916255	60916455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001281976)	TTS (NM_001281976)	7330.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	5.71487840879613	5.7176594728351	5.44089712914795	5.8631724650924	5.78815325070984	5.78794669540958	5.66215959286029	5.58186082817892	0.0038770413007546	0.988369426819775	0.995445808115911
Merged-chr9-69290468-3	chr9	69290364	69290564	+	916.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289916, intron 1 of 9)	CpG	623.0	NM_001289916	19883.0	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	3.28891160777611	3.21192209020032	3.48672129426891	3.34252848581242	2.97874528374232	2.955706140797	2.91274588611754	3.11648566511049	-1.41003536185025	0.0170436170296664	0.114827034221924
Merged-chr6-133960876-4	chr6	133960790	133960990	+	922.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74810.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	4.37277807637841	4.31048488967195	4.61699591099831	4.66026142752092	4.63391942846387	4.0806675506334	4.59513164966908	4.45708541793122	-0.0882642808093292	0.823513957968962	0.932313798231142
Merged-chr1-36988615-3	chr1	36988509	36988709	+	947.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-49082.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	3.13812023133746	3.13811090854406	3.40954417492855	3.36731207831058	3.1980428108151	3.11993423192495	2.93546875875913	3.19587710167792	-0.594259508844627	0.298526052489918	0.610649937930853
Merged-chr6-16221411-3	chr6	16221309	16221509	+	667.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	500748.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	3.28792062076363	3.11808927305109	3.28838369817554	3.11830058645396	3.32074594083998	2.95629711889323	2.91363513251281	3.2865109109985	-0.237587633310226	0.685931353546493	0.871746528364059
Merged-chr7-45128943-4	chr7	45128868	45129068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009438)	promoter-TSS (NM_009438)	-223.0	NM_009438	22121.0	Mm.180458	NM_009438	ENSMUSG00000074129	Rpl13a	1810026N22Rik|Tstap198-7|tum-antigen	ribosomal protein L13A	protein-coding	8.59066217632088	8.82203482547514	8.75577703471234	8.5564747320862	8.80529536385698	9.13654439800382	8.78063726285455	8.54322365500701	0.186011907075863	0.291837587509897	0.604226639558071
Merged-chr3-8789966-3	chr3	8789856	8790056	+	709.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB2_1A-I_MM-int|LTR|ERVK	-122918.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	3.53183876233503	3.30398442449872	3.2610066238768	3.49518532812055	3.37077047349678	2.94616957985511	3.51721335039627	3.37472381141906	-0.296986045047284	0.60291196110188	0.827877201212854
Merged-chr16-65454029-4	chr16	65453932	65454132	+	880.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-66597.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	4.04906774926772	4.3945107762179	4.41812951807876	3.67282052733103	4.30925727196422	4.37581178754414	4.6478821014708	4.19769547835849	0.568448689905696	0.206823768702037	0.510823764960849
Merged-chr13-33085805-4	chr13	33085718	33085918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173052, intron 2 of 6)	intron (NM_173052, intron 2 of 6)	1715.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	6.74840668304384	6.65135513309826	6.23922623206653	6.52867496104863	6.72042135441166	6.39694566736125	6.90825590601594	6.6728932492229	0.195136801561138	0.394886351434086	0.693861008880169
Merged-chr1-138843567-1	chr1	138843467	138843667	+	579.0	f0_balb.idr	intron (NM_010714, intron 2 of 6)	intron (NM_010714, intron 2 of 6)	-1123.0	NM_001025565	16876.0	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	2.92519405673447	2.96632601312059	3.08938925327587	2.9441069911918	2.70830087889715	2.69937498501324	2.79400874281092	2.59468785346803	-1.35505629631954	0.0382282381940042	0.195960635140796
Merged-chr2-129338440-4	chr2	129338339	129338539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28467.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	7.08956277822316	7.51549164612828	7.40714820989554	7.35378584725575	7.44163625150989	7.68046955830636	7.83810972251245	7.73331163135524	0.428352116156218	0.0254275632341953	0.150242343284202
Merged-chr3-153944649-4	chr3	153944575	153944775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007382)	promoter-TSS (NM_007382)	-32.0	NM_007382	11364.0	Mm.10530	NM_007382	ENSMUSG00000062908	Acadm	AU018656|MCAD	acyl-Coenzyme A dehydrogenase, medium chain	protein-coding	8.61977830584914	8.7608628957952	8.94989505718553	8.82594815002483	8.68397248963068	8.81244267649914	8.97915394952563	8.74338108895612	0.01534495424402	0.922028340300116	0.971073852305605
Merged-chr19-4144091-4	chr19	4143985	4144185	+	958.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_206973, exon 2 of 2)	3' UTR (NM_206973, exon 2 of 2)	4286.0	NM_206973	269053.0	Mm.131677	NM_206973	ENSMUSG00000044724	Gpr152	A930009H15Rik|Gm673	G protein-coupled receptor 152	protein-coding	5.33297613132112	5.10589571683065	4.75641026811134	4.43305990209369	4.70786548011823	5.01116492499775	5.11372884614999	4.94147708974625	0.015425891437964	0.967802515567318	0.988579929904943
Merged-chr3-121852211-1	chr3	121852111	121852311	+	820.0	f0_balb.idr	Intergenic	Intergenic	-36909.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	3.58240639835247	3.29619196073218	4.00691589558959	3.69956600906446	3.40076970039152	3.58281564142657	3.72447195940581	3.78673004675946	-0.126637787885396	0.809065573543307	0.926336354060594
Merged-chr19-5848846-2	chr19	5848746	5848946	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3366.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	3.12686869761507	3.24898324305452	3.4232050925996	3.24626630530709	3.36376040587262	3.5890732922036	3.40940631310388	3.31059074019715	0.55765373596076	0.284882368133727	0.596664472013846
Merged-chr7-80711615-4	chr7	80711497	80711697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_016721)	TTS (NM_016721)	-22720.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	6.65841869411507	6.96297416550145	6.29725766804865	6.67496078611321	6.33621716235335	6.475376407164	6.64044133179958	6.74165847536609	-0.176470810670805	0.458324620379615	0.741197985959028
Merged-chr5-99415226-4	chr5	99415140	99415340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-162313.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.23450230356387	7.21159521941162	7.00609113078389	7.17867187897607	7.28431060397454	7.15760883479379	6.79585932895128	6.62182677705661	-0.220879010252315	0.318376453465223	0.630315066370013
Merged-chr11-121057006-4	chr11	121056847	121057047	+	887.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026907, intron 2 of 4)	MT2A|LTR|ERVL	6622.0	NM_026907	58210.0	Mm.116986	NM_026907	ENSMUSG00000039364	Sectm1b	1810003C24Rik|K12|Sectm1	secreted and transmembrane 1B	protein-coding	4.03301210251411	3.90267355663238	3.90179132191394	3.82905113510807	3.60756829367193	3.6401992448895	3.73814869344073	3.75102515005014	-0.694794719565187	0.127548247330931	0.397369460390093
Merged-chr17-34121918-3	chr17	34121816	34122016	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010386)	promoter-TSS (NM_010386)	-169.0	NM_010238	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	4.9668905801789	5.3742490846419	4.73269008134517	4.62326045950557	5.18630092113206	5.21159779987738	4.9077247584414	5.30725824358503	0.405536212319632	0.250838003809611	0.56211309615478
Merged-chr5-115327109-4	chr5	115327020	115327220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025573)	promoter-TSS (NM_025573)	-57.0	NM_025573	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	7.15658478119472	7.1699781369271	6.42438240982246	6.70585248969684	6.98964393673865	7.43821557578682	6.88331204661934	6.72928265084543	0.190070529366866	0.465338438577545	0.745811792142008
Merged-chr15-74921475-3	chr15	74921401	74921601	+	810.444458	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33550.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	3.07018659619707	2.91339706428748	2.74206269040023	3.01944983047694	3.1936251405951	3.18041600361868	3.05907824374455	3.00962521030569	0.682772129396103	0.247141529782582	0.558168726560377
Merged-chr11-34833675-4	chr11	34833582	34833782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027411)	promoter-TSS (NM_027411)	-41.0	NM_027411	70385.0	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	6.77111932598835	7.2335748708133	6.33653210233311	6.66056618970095	7.34510887226259	7.40177792080405	6.86351786931542	6.70706718740492	0.449344928196346	0.0968598345663963	0.34090261569477
Merged-chr7-110627444-4	chr7	110627315	110627515	+	949.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009627)	promoter-TSS (NM_009627)	-242.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	3.93795507246721	4.25005968736399	3.93850166005602	4.15201697463966	4.30363228934115	3.95012072369271	3.87002896914976	4.21642535026467	0.0589735607645381	0.892009403276808	0.9596010491436
Merged-chr2-19716029-4	chr2	19715912	19716112	+	878.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57950.0	NM_027715	71198.0	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding	3.80567410982768	4.0411266261668	3.80616493144137	4.05933114922461	4.15258329717417	4.2993394949378	4.32257709858514	4.62408590614062	1.03037125587019	0.0159933030939142	0.109650548404329
Merged-chr7-16255601-4	chr7	16255510	16255710	+	985.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	B3A|SINE|B2	3728.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	5.07721299105714	4.99178462122813	5.42064279331286	5.1453230982106	5.00786482993583	4.78969427245767	4.95166950032255	5.04137840532166	-0.403588661421809	0.204055234711674	0.507244798195929
Merged-chr8-79160070-4	chr8	79159970	79160170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	RCHARR1|DNA|hAT-Charlie	88513.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	5.35494886830974	5.58103584173559	5.4161150638839	5.78149148745748	5.48941778408889	5.46911576899805	5.44631818364044	5.46982256759283	-0.166155159083734	0.555072649546279	0.80121730233361
Merged-chr4-40287622-4	chr4	40287523	40287723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-8202.0	NM_001033305	230075.0	Mm.1103	NM_001033305	ENSMUSG00000071014	Ndufb6	CI-B17|Gm137	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	protein-coding	5.41180142048948	5.89386169234294	5.61607125103835	5.62524981263663	5.83351753204899	5.8176908148787	5.58781748482675	5.83307776323582	0.203488820395513	0.445452943248183	0.731480702512456
Merged-chr11-107510520-4	chr11	107510415	107510615	+	879.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30987.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	3.69476434846056	3.87840344979078	3.57492989285317	3.76347393418889	3.97422134105299	4.02923107034551	4.11178550422284	3.99914952624371	0.8114076139619	0.0637475676902957	0.268141361578274
Merged-chr7-45459875-4	chr7	45459771	45459971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010240)	promoter-TSS (NM_010240)	15.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	8.91486317590691	9.00228118519702	8.77767266378624	8.50776245258801	9.06878501491244	9.0980636807474	9.22336626861791	8.91813899494332	0.338860202296757	0.0460612626243796	0.220320852922567
Merged-chr5-20847154-1	chr5	20847054	20847254	+	774.5	f0_balb.idr	intron (NM_172992, intron 2 of 17)	intron (NM_172992, intron 2 of 17)	34970.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	3.46689078196611	3.49168590506568	3.81726316359424	3.60342428475604	3.616274597036	3.32624307908805	3.51002451791665	3.57553727062464	-0.272337582733664	0.587439736645915	0.819207635676705
Merged-chr8-77419990-4	chr8	77419919	77420119	+	868.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 7 of 22)	intron (NM_030113, intron 7 of 22)	-97037.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	3.91194007728112	3.80300407893039	3.91251117352172	3.96726525542588	3.71900173631323	3.87697161047632	3.98849458715217	3.91020146704409	-0.0931890661189837	0.831312631349552	0.935322338382222
Merged-chr8-120575892-6	chr8	120575713	120575913	+	860.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 13 of 15)	intron (NM_001145896, intron 13 of 15)	13262.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	3.37351739195247	3.03768786037799	3.71584650000952	3.35529072290494	3.2444345174607	3.37014190404942	3.24510175353546	3.42690304512597	-0.23480399549213	0.675092091023729	0.866526850127637
Merged-chr10-44071293-4	chr10	44071195	44071395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66449.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	5.62875615828082	5.29488687461995	5.49914408225423	5.5875200132966	5.52574027505867	5.46672132158436	5.52509252774947	5.43907863458191	-0.0363072978853485	0.894045285203506	0.960481560907683
Merged-chr3-50439023-4	chr3	50438911	50439111	+	808.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011990, intron 1 of 11)	intron (NM_011990, intron 1 of 11)	4602.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	4.74297737419773	4.50187077503276	4.94774432772494	5.03750657948977	4.44393439640834	4.58653340918316	4.64591531870638	4.58388545360995	-0.586434568511552	0.106115017429109	0.358939353969802
Merged-chr17-24529323-3	chr17	24529218	24529418	+	865.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045289)	TTS (NR_045289)	1067.0	NR_045289	75614.0	Mm.440235	NR_045289	ENSMUSG00000093565	Rab26os	2610019E17Rik	RAB26, member RAS oncogene family, opposite strand	ncRNA	2.85828784959859	3.47870700136761	3.27426051233314	2.83124290199448	3.61696831855959	3.26328776111828	3.66331956810514	3.33084191637602	1.21811222856072	0.0499907844387559	0.231750296050945
Merged-chr2-164414809-4	chr2	164414705	164414905	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009036, exon 12 of 12)	3' UTR (NM_009036, exon 12 of 12)	-9645.0	NM_001252563	17183.0	Mm.29428	NM_013592	ENSMUSG00000016995	Matn4	matrilin-4	matrilin 4	protein-coding	5.37003589189236	5.58151633984854	4.98563490454761	5.56780541686848	4.07999144342665	4.72142676264274	4.46626069138263	4.71432285906593	-1.83754317708303	1.32295836270185e-06	4.50990676718174e-05
Merged-chr3-88553011-4	chr3	88552908	88553108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033526)	promoter-TSS (NM_033526)	-57.0	NR_155541	83409.0	Mm.41680	NM_031248	ENSMUSG00000028062	Lamtor2	2010111E04Rik|AL022628|Mapbpip|P14|Rab25|Robld3	late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	protein-coding	7.51257182318261	7.60254523938185	7.06053201664367	7.32875268041511	7.55597549347115	7.68174921872647	7.31301290188928	7.48121602200384	0.163025308454747	0.413566191072893	0.708480186817888
Merged-chr4-114986746-4	chr4	114986639	114986839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025647, intron 1 of 5)	CpG	489.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	5.4408557204372	6.02600230080425	6.54791386822004	6.02672205949466	6.0231750230938	6.21446140376653	6.18762088699797	6.32292915472072	0.186561363938388	0.524623813697484	0.783071329178099
Merged-chr15-77917363-4	chr15	77917233	77917433	+	722.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019913, intron 3 of 3)	intron (NM_019913, intron 3 of 3)	11661.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	3.95371908294335	4.2010688762677	4.00210682088516	3.72473934501456	4.06228482172533	3.80361098879634	3.88849234323036	3.95195563565901	-0.0975812249239882	0.828146316577822	0.934059495906902
Merged-chr4-119966394-3	chr4	119966299	119966499	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	151721.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	7.33430909160865	7.51272441974977	7.4613705075063	7.22393852175	7.31085108840998	7.29075119111163	7.2042300752961	7.15604445669529	-0.183829620842538	0.316290576326717	0.6282290917209
Merged-chr1-181852631-4	chr1	181852516	181852716	+	947.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10215.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	5.2771672796177	4.63035274628226	5.3871436923526	5.53083246944617	5.004959862963	4.75857098810314	5.03623343643694	5.05746774617644	-0.543130436942416	0.130504262432183	0.402130363128451
Merged-chr2-133021328-6	chr2	133021261	133021461	+	814.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75325.0	NM_198029	241639.0	Mm.209784	NM_198029	ENSMUSG00000027356	Fermt1	5830467P10Rik|Kindlin-1	fermitin family member 1	protein-coding	3.51158560193334	3.33369337493748	3.40684991140668	3.44217646293249	3.36981749551675	3.27613969126738	3.49762042821717	3.29043314194446	-0.219698078358797	0.66816454001297	0.862848418644997
Merged-chr1-55576188-3	chr1	55576067	55576267	+	740.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	170221.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	3.62558491089706	3.5818865985659	3.82354194171631	4.23236361376335	3.35690568270353	3.44244624860844	3.31725493130656	3.56963789602049	-1.40969811923888	0.00907633197671268	0.0735394688412557
Merged-chr6-83137729-4	chr6	83137619	83137819	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133641, exon 1 of 12)	5' UTR (NM_133641, exon 1 of 12)	635.0	NM_133641	20166.0	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	4.4990666904978	4.71089113898832	4.57856916101724	4.88653863335896	4.20842893743814	4.30568907633931	4.39593246215762	4.12308810128024	-1.00648470746945	0.00872329027405086	0.0715175165188512
Merged-chr12-79983472-4	chr12	79983386	79983586	+	849.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47222.0	NR_131074	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	4.55062000344705	4.77366158915844	5.06249004263727	5.0261605857187	4.41200775231947	4.1741716906465	4.48821673832725	4.50579188085994	-1.03958287095261	0.00585024794436154	0.05327722600201
Merged-chr10-30661147-2	chr10	30661047	30661247	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 10 of 14)	intron (NM_001358842, intron 10 of 14)	-5280.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	3.51773140077789	3.4536526153829	3.74033603442069	3.71255955867512	3.77016101910166	3.75207825190719	3.61979311146699	4.0912987129215	0.601598430492586	0.211216438841477	0.515787529171727
Merged-chr1-191275819-4	chr1	191275704	191275904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER30|DNA|hAT-Charlie	42314.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	8.01908161703179	8.24225081205766	8.12215577410545	7.98139027701841	7.79876406024205	8.07991332780037	7.77395277846673	7.72567363300046	-0.314514188079554	0.0683563415138554	0.279190209797519
Merged-chr11-116197696-3	chr11	116197562	116197762	+	692.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271898, intron 2 of 13)	intron (NM_001271898, intron 2 of 13)	-1193.0	NM_027107	69535.0	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	3.26762191640727	3.0475701775368	3.47454695219843	3.70384275941744	2.93075043200709	3.06213925098601	2.94446349225858	3.20907269568479	-1.44773890183783	0.0198317981140577	0.127366918520302
Merged-chr15-97360712-2	chr15	97360612	97360812	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 3 of 5)	intron (NM_172293, intron 3 of 5)	-113425.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	2.82884612698678	2.82695531246571	3.0503510562203	2.34807817187183	2.82230344584454	2.81163828704173	2.55566012980833	2.48645646793731	-0.519079658032475	0.486467347720567	0.760181214838873
Merged-chr17-26753708-4	chr17	26753633	26753833	+	914.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029870, intron 4 of 8)	intron (NM_029870, intron 4 of 8)	-27346.0	NM_172149	224630.0	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	5.44524481864761	5.16443768121058	4.76863447240908	5.55499563136362	4.65394957869086	4.73143003551896	4.32401927523492	4.95405718534199	-1.17807042185747	0.00187031772137524	0.0221915894465358
Merged-chr10-59369626-3	chr10	59369530	59369730	+	886.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001316371, exon 14 of 15)	exon (NM_001316371, exon 14 of 15)	-34055.0	NM_023530	69836.0	Mm.30268	NM_023530	ENSMUSG00000009646	Pla2g12b	2010002E04Rik|Fksg71|Pla2g13|hlb218	phospholipase A2, group XIIB	protein-coding	4.23348230807984	4.12552874853391	3.91066451592461	4.56328475851894	4.02142759053419	3.73668715706453	3.89490346073061	3.79912905966002	-0.994764266787447	0.0324445271089047	0.176341554297856
Merged-chr4-108458312-4	chr4	108458206	108458406	+	961.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1120.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	5.56019953944156	5.48541510206456	4.65674832787377	4.53777625436367	5.22148617348111	5.37588825789997	4.58979884057325	4.46046707114754	-0.321309583554428	0.481654682881884	0.756747719248844
Merged-chr18-79330281-4	chr18	79330186	79330386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-220895.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	6.05179590310678	5.89721673612834	5.92035161944479	6.43916124759265	5.59566008387626	5.78533610935507	6.30091106059505	6.20584620932949	-0.176209588988111	0.548800656713806	0.797649750024352
Merged-chr10-118815003-4	chr10	118814893	118815093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	53910.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	5.40649850743005	5.36016639893843	5.97145988155514	5.14790829281675	5.65247633826479	5.6121827097113	5.57125486888942	5.1417785818947	0.031055974418879	0.924666929942177	0.972155437156276
Merged-chr14-45664464-4	chr14	45664337	45664537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-6294.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	6.07651302312095	6.16283189312407	6.43668002588097	6.11522606513029	7.03017847414014	6.87727204470657	6.65359347141901	6.32332570857942	0.813616643562075	0.00092557248874014	0.0126522410291052
Merged-chr9-65581139-4	chr9	65581031	65581231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1044.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	6.81880214897677	6.70930393322493	6.57204680716491	6.74461059578864	7.03376954937423	7.14206195096072	6.96752811572436	7.05728422134073	0.46575376787384	0.0153905004986713	0.106803201227934
Merged-chr9-121846870-3	chr9	121846798	121846998	+	972.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER2|DNA|TcMar-Tigger	-7437.0	NM_028384	100502861.0	Mm.335550	NM_028384	ENSMUSG00000079235	Ccdc13	2900041A11Rik|Gm188	coiled-coil domain containing 13	protein-coding	4.75044773067935	4.34591762793798	4.62046937652189	4.4810097562346	3.74236508034584	4.08251560250709	4.05034557174207	4.21489544647379	-1.33228511759321	0.00169815759937623	0.0205749520274187
Merged-chr10-95361384-4	chr10	95361287	95361487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045337, intron 2 of 2)	intron (NR_045337, intron 2 of 2)	25111.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	5.29464726567995	5.81603181472412	5.63658805782223	5.10368867679891	5.47968366278536	5.59534750318467	5.68005449538156	5.47362455344571	0.133421259143905	0.664898964669644	0.861125281926661
Merged-chr8-86861749-4	chr8	86861636	86861836	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030563, exon 2 of 7)	exon (NM_030563, exon 2 of 7)	23522.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	4.91484078268759	5.17906522914143	4.95272972039292	5.14026209548343	5.37395570965957	4.9756217017243	5.30271303860137	4.79447570894409	0.161064734239149	0.624906680567444	0.839659374707287
Merged-chr7-102012016-2	chr7	102011916	102012116	+	547.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133947, exon 20 of 25)	exon (NM_133947, exon 20 of 25)	6139.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	3.0678444501966	3.33527684407326	3.00966967565446	2.59150130959759	2.81750951872263	2.92617594422047	3.05580063040602	2.74423683521817	-0.581678869145817	0.388654254540259	0.689050386119166
Merged-chr7-28584079-4	chr7	28583982	28584182	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027470, intron 1 of 9)	L2b|LINE|L2	14102.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	4.99473547253373	4.89422531809203	5.12689326169932	5.20743438188577	4.83444474496724	4.90549270011004	5.101682155714	5.12336844192827	-0.155773954806704	0.624969010350263	0.839665122417083
Merged-chr10-60284463-4	chr10	60284342	60284542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146124)	promoter-TSS (NM_001146124)	-19.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	6.11125164306668	5.55284416069642	5.9666444811646	6.26773899725982	6.04771313567753	5.76281709490224	5.79720301909497	6.2383308380019	-0.051410084806597	0.856085973353746	0.945833814471809
Merged-chr9-96720812-3	chr9	96720699	96720899	+	612.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359959)	promoter-TSS (NM_001359959)	-949.0	NM_001359959	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	3.077656999342	3.03826331492928	3.4142544149795	3.16214846670312	3.13763820565275	3.31199822485876	3.18815954901021	3.19845115009958	0.111292572483719	0.840494886273839	0.939305852792169
Merged-chr11-43492895-4	chr11	43492802	43493002	+	768.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18596.0	NM_026979	69183.0	Mm.390374	NM_026979	ENSMUSG00000046491	C1qtnf2	1810033K05Rik|CTRP2	C1q and tumor necrosis factor related protein 2	protein-coding	3.94674459265394	3.51650556712679	3.69810749685266	3.81898106282755	3.85285818157905	3.8711238106011	3.83708801587024	3.85112221667555	0.278493366460366	0.540401187807398	0.792786542610647
Merged-chr14-121423115-4	chr14	121422997	121423197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43867.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	6.74379418018216	6.58091842264836	6.74498048876641	7.01015169235227	6.6960048649863	6.33512853033524	6.77976695732357	6.57251120244937	-0.256119691570261	0.253251874913713	0.564554187425091
Merged-chr10-19992032-2	chr10	19991945	19992145	+	728.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	57519.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	3.79340349946998	3.64232471825136	3.34865901249887	3.60924596107214	3.72929646200414	3.8144555347531	3.57634131804117	3.6422532335484	0.265279512046463	0.582106581142468	0.816501953640427
Merged-chr12-70112989-4	chr12	70112889	70113089	+	980.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104397)	promoter-TSS (NR_104397)	-954.0	NR_104397	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	5.53714430105797	6.08156394795567	5.48162311503911	5.93736755062782	5.46779857820422	5.26117402501621	5.75833495160563	5.15135527426925	-0.612132895199976	0.0497080440233627	0.230826557092361
Merged-chr7-145284506-4	chr7	145284407	145284607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132642)	promoter-TSS (NR_132642)	-496.0	NR_132642	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	6.95636035346042	7.1242331215548	6.95757130251643	7.21098442851255	7.1600115490487	6.95213449217832	7.12666716933871	7.07718710819382	0.00976512341638087	0.959305784019114	0.985513818852278
Merged-chr2-128698298-4	chr2	128698187	128698387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008587)	promoter-TSS (NM_008587)	-628.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	6.37320596507318	6.43226027950377	5.86065542549242	6.26355616332005	6.37310131213433	6.47773281485954	6.34169035694506	6.50306266840957	0.251240745009251	0.285192563372387	0.596953252281083
Merged-chr4-149863715-2	chr4	149863617	149863817	+	932.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89450.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	4.1384362991251	3.68434815119494	3.883119422953	4.17293519742535	3.52131380688367	3.55200308689127	3.48853201679817	3.73051937382241	-1.27123376616366	0.00993278708754694	0.0785387527332263
Merged-chr19-42001415-4	chr19	42001317	42001517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	19654.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	6.46362106021094	6.59257359957918	6.86951644380004	6.81285487595298	6.32271626022261	6.26925260903974	6.30679307930148	6.29645098866512	-0.588943563345519	0.00734112185610867	0.06303313875391
Merged-chr4-55741545-4	chr4	55741436	55741636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-209061.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	6.7994333827315	6.27831794516376	6.96842995260379	7.08382872969347	6.88140160626065	6.41472391463921	6.8965026989966	6.48399359397799	-0.184016557249012	0.479063529487829	0.754876095045917
Merged-chr12-84417294-4	chr12	84417189	84417389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025525)	promoter-TSS (NM_025525)	89.0	NM_025525	66381.0	Mm.24846	NM_025525	ENSMUSG00000098134	Rnf113a2	2310020H19Rik|AI426758|Rnf113a	ring finger protein 113A2	protein-coding	5.74617939667761	5.75688600321032	6.19718653132428	5.46622968186496	6.29176557258478	6.04539878268897	5.74333942168477	5.91146814061052	0.350697930074774	0.226203089937028	0.53471853271654
Merged-chr1-74370098-4	chr1	74370017	74370217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033345)	TTS (NM_001033345)	-5086.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	5.61878062580642	5.54393808122603	5.79532429531606	5.39016735348754	5.89804492613612	5.99218899983163	5.81147309346019	5.6423944923018	0.440505657652521	0.0976213990495731	0.342421571904971
Merged-chr14-54864175-4	chr14	54864060	54864260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177705)	promoter-TSS (NM_001177705)	-2.0	NM_001177705	239099.0	Mm.280994	NM_183174	ENSMUSG00000057156	Homez	mKIAA1443	homeodomain leucine zipper-encoding gene	protein-coding	7.59559742724955	7.63981032885587	7.55168561558413	7.75947076855981	7.53608068210653	7.78312150409394	8.00212751341688	7.72617803573148	0.159997885487374	0.380766317130106	0.68308001328235
Merged-chr14-78699251-3	chr14	78699147	78699347	+	904.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081336, intron 2 of 29)	intron (NM_001081336, intron 2 of 29)	33482.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	4.55001704650554	4.88435240625781	4.61816287063907	4.28780994025047	3.49955469207203	3.89398796983298	3.62268463510902	3.41356244749673	-2.86483027046156	6.00227927149024e-08	2.70060832026172e-06
Merged-chr14-98956945-3	chr14	98956841	98957041	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89195.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	5.33423013502128	4.92212270310368	5.38525887131843	5.96472541973463	4.13543551064764	3.97543790290097	4.0988725119346	4.54665723467573	-2.71672133451895	9.96784607438491e-10	6.40344147769534e-08
Merged-chr7-104507895-4	chr7	104507760	104507960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167828)	promoter-TSS (NM_001167828)	-11.0	NM_001167828	209387.0	Mm.277377	NM_199146	ENSMUSG00000057596	Trim30d	AI451617|TRIM30-3|Trim79	tripartite motif-containing 30D	protein-coding	6.30730518040755	6.12364490402204	5.8010657434248	5.88426274547952	6.32218284328796	6.40956206073045	6.71373464869404	6.37454022350518	0.644663414003359	0.00869350026053436	0.0713801655374986
Merged-chr12-100199482-4	chr12	100199367	100199567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009790)	promoter-TSS (NM_009790)	32.0	NM_009790	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	7.55572207039731	7.52653291962694	7.32588895154369	7.27329582427903	7.59689840609541	7.5947634633272	7.49323290204907	7.40263235142981	0.142969181088058	0.427163311296357	0.718354140121047
Merged-chr8-117519145-4	chr8	117519066	117519266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	20891.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	5.81131761352405	5.45298954206867	5.64970332951483	5.6795713817299	5.43780749668356	5.48723622563686	5.37708273114175	5.42988865007572	-0.379890361657787	0.159969208244099	0.44780601493208
Merged-chr11-87761859-18	chr11	87762028	87762228	+	940.6239619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172449, intron 1 of 31)	intron (NM_172449, intron 1 of 31)	1587.0	NM_172449	207777.0	Mm.342019	NM_172449	ENSMUSG00000034156	Tspoap1	Bzrap1|D230016K05|PRAX-1|mKIAA0612	TSPO associated protein 1	protein-coding	3.56230064527373	4.424157548866	3.35889129450301	2.92760950464198	4.14547214977731	4.02520681543009	3.72499442850319	4.1218080133718	0.77232051696998	0.40299495978759	0.700500091399567
Merged-chr11-98952061-3	chr11	98951977	98952177	+	849.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 2 of 8)	B2_Mm2|SINE|B2	-8394.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	3.75304449272748	3.41584549556047	3.59601998526782	3.42457564670611	3.65723552318437	3.76968387024474	3.63589067460333	3.9766974525703	0.681431989050915	0.15610326877055	0.441990326602117
Merged-chr18-23987086-4	chr18	23986968	23987168	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2566.0	NM_011755	22694.0	Mm.290596	NM_011755	ENSMUSG00000063281	Zfp35	Zfp-35|Znf271|mszf13|mszf20-1|mszf28|mszf68	zinc finger protein 35	protein-coding	4.73882244017372	4.59351507948486	5.11156649309936	4.53030846465547	4.49617904838762	4.67763956300739	4.34581047911691	4.40943564552276	-0.579516960638884	0.129015808334453	0.399635154769052
Merged-chr10-62556657-4	chr10	62556557	62556757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21800.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	7.43361985505319	7.48931501886301	7.56793175708168	7.9211494614115	7.55835074782757	7.69946135128002	7.92775179192965	7.64132688765343	0.105751109958346	0.594577038616805	0.823469646879121
Merged-chr17-79955042-4	chr17	79954931	79955131	+	950.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58908.0	NM_001286647	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	4.20226166395006	4.25581551088842	5.16633552116198	4.66067395148189	3.9604124774045	4.33347696738872	4.89463175565103	4.64566913439618	-0.270917802934372	0.572576957012467	0.811251013052168
Merged-chr1-36554720-4	chr1	36554622	36554822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304329, intron 2 of 14)	intron (NM_001304329, intron 2 of 14)	2835.0	NM_001304330	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	5.78509916551024	5.82584588244455	5.68139953509285	6.07062379468905	5.96565901875916	5.88562407844684	6.32828113403539	5.87867913673095	0.256441005350499	0.331568872261898	0.642627926701357
Merged-chr8-60963000-4	chr8	60962905	60963105	+	950.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007711, intron 1 of 11)	intron (NM_007711, intron 1 of 11)	-8206.0	NM_173876	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	4.80907124626486	4.49196280336463	5.14118642574795	4.96267645152217	4.92643333592007	4.90725280701302	4.78715685000814	4.98299382752772	0.0575148219362402	0.86739013453151	0.950313421774078
Merged-chr2-120977565-4	chr2	120977516	120977716	+	859.089294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175285, intron 1 of 13)	CpG	554.0	NM_175285	96957.0	Mm.315212	NM_175285	ENSMUSG00000054484	Tmem62	B830009D23Rik|C77355	transmembrane protein 62	protein-coding	4.48951056163912	4.09791379145594	4.84395533935019	4.52911339638206	4.17200818196009	4.4912748361669	4.38588438281624	4.56639636678472	-0.247667616543553	0.543273483755633	0.794380806923769
Merged-chr1-138343553-3	chr1	138343426	138343626	+	842.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	69788.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	3.11496494002726	2.95490109557604	3.22781652859729	2.99964523895389	2.91968025944498	3.16594166391216	2.9822422638322	3.27855267351175	0.0683023140206129	0.906364427008774	0.965332391151937
Merged-chr4-149666087-3	chr4	149665985	149666185	+	968.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 2 of 23)	ID_B1|SINE|B4	-2769.0	NM_001164052	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	4.50045242034589	3.9008357378538	3.74440703350031	4.05057614970417	4.025810464501	4.36907084091725	3.8446820670822	3.91203700156255	-0.0677860475267505	0.886169512950689	0.957247996194402
Merged-chr8-71370845-3	chr8	71370747	71370947	+	899.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029865)	promoter-TSS (NM_029865)	-451.0	NM_029865	77090.0	Mm.440170	NM_029865	ENSMUSG00000002396	Ocel1	9430098E02Rik|AI326022|AI593544	occludin/ELL domain containing 1	protein-coding	3.6767256724501	3.58394485095854	3.30153469880047	3.10255313133962	3.95407772542061	4.00404639739568	3.86190908967922	4.0516304451074	1.69670138483123	0.000730893625265352	0.0104797031768856
Merged-chr9-111094799-4	chr9	111094681	111094881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-23330.0	NM_027742	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	5.59662153977245	5.44920557586106	5.4641479417056	5.82610594622713	5.44138063370032	5.25197597954078	5.4368534926018	5.37301898264953	-0.39639917740851	0.162765469271315	0.452255606647826
Merged-chr2-57232559-4	chr2	57232450	57232650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5128.0	NM_001145820	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	7.31351212782472	7.0683370011632	7.47845299724798	7.68278924945212	7.89636498580258	7.57699990039417	7.82528623359805	7.91989324152675	0.523610263184234	0.0104804114471642	0.0816712509741298
Merged-chr15-99457220-4	chr15	99457098	99457298	+	850.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001884, intron 1 of 12)	CpG	550.0	NM_001001884	380969.0	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	4.13711851828855	4.08531876786709	4.13774951004833	3.91631097149269	4.09829272414665	4.11770571491382	3.92716292392342	4.26375224426312	0.120621094281443	0.77102671063882	0.910353175958998
Merged-chr14-105328511-3	chr14	105328405	105328605	+	877.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69832.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	3.53940966559903	3.19742664573165	3.88168324026416	3.44199555569485	3.54990120142885	3.65737970054542	3.68182862145663	3.64510919110551	0.322767804556188	0.53212518930446	0.787887979728791
Merged-chr1-135659693-4	chr1	135659595	135659795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60368.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	7.87304191575601	7.57245964736908	7.73655851699644	7.92454439937176	6.93071250573095	7.18713178737786	7.28552735708242	7.47708734750848	-0.745052737456299	0.000193944318385334	0.00354513678437332
Merged-chr5-24384688-4	chr5	24384577	24384777	+	977.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008713)	TTS (NM_008713)	7466.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	5.38923443908188	5.38959489530089	5.08417923289192	5.13967164638279	4.78844094390525	5.35804811945231	5.2502363591503	5.21196662551006	-0.179392024511229	0.57562491599186	0.813162434587734
Merged-chr14-45659763-4	chr14	45659670	45659870	+	831.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1627.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	4.57833984243128	4.17716594260669	3.96366887898347	4.04025671408688	4.04465206530562	4.03275225743976	4.04774089625223	4.0626479872754	-0.404311835454669	0.350476786935706	0.658055137870761
Merged-chr8-120487986-5	chr8	120487937	120488137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198671)	promoter-TSS (NM_198671)	-829.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	4.92399724904942	4.76161472272523	4.82120230155127	4.31294447912235	4.85444136950961	4.9576481736372	4.8673953041311	4.58175387650309	0.244285703265349	0.507213556724581	0.772710503440438
Merged-chr4-127169674-3	chr4	127169578	127169778	+	623.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198618, intron 1 of 11)	intron (NM_198618, intron 1 of 11)	474.0	NM_198618	242667.0	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	DLG associated protein 3	protein-coding	3.59944501458051	3.27788421903428	3.1859307069768	3.20716528650407	3.11234842035768	3.09816323098583	3.34378896545743	3.18434979048387	-0.509205167848704	0.363830187340272	0.668839677917313
Merged-chr2-68382596-4	chr2	68382514	68382714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 5 of 17)	intron (NM_016866, intron 5 of 17)	89367.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	6.53091808994702	6.28168545958062	6.90327777127283	6.79932180657076	6.10058545247297	6.15847337192372	6.39914228403556	6.39236357614154	-0.575727677507585	0.0186504979930343	0.122206001716486
Merged-chr11-116012688-4	chr11	116012578	116012778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016905)	promoter-TSS (NM_016905)	41.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	6.21923296938756	6.24252735229805	5.88909538752589	5.81948858322758	5.96131692229949	6.06518577009424	5.97161198433127	5.86103724650662	-0.124961763242811	0.622022833402639	0.838154589422968
Merged-chr17-83846474-3	chr17	83846386	83846586	+	696.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025325, intron 1 of 9)	intron (NM_025325, intron 1 of 9)	304.0	NM_025325	107766.0	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	3.27786271772665	3.55567924878489	3.21286519918544	3.21838960390224	3.72606970306106	3.57279009702773	3.54915774915662	3.56197420988624	0.968280943845823	0.0557986561522559	0.247287998646499
Merged-chr3-53462867-2	chr3	53462767	53462967	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173382)	promoter-TSS (NM_173382)	391.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	4.83914432087995	4.89771835117625	4.87620539488894	4.77163994052052	4.61802219804495	4.93869486178001	4.88778905899498	5.0708101146285	0.075194742386746	0.820886207681454	0.931443689364036
Merged-chr6-100287375-7	chr6	100287251	100287451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019743)	promoter-TSS (NM_019743)	7.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	5.99081771704797	6.15752163745579	5.63647945818844	5.28897336054088	6.45672355669673	6.3896765280085	6.20109725582314	6.153387901288	0.79860782015562	0.00584092764532635	0.0532468479593602
Merged-chr5-142367590-6	chr5	142367509	142367709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-33888.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	6.88608195419812	7.00317908958911	6.85944468875101	6.18460080711922	7.06443151928499	7.54880898958138	7.12265042956041	7.45735625435246	0.763588603641144	0.00251842429098676	0.0279176020258755
Merged-chr9-111289219-3	chr9	111289143	111289343	+	790.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17398.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	3.74277028103907	3.7288934151017	3.63820529725101	3.83467757769988	3.72126960468759	3.57726117044001	3.5690394235579	3.88391117299471	-0.147861072898942	0.752226616076241	0.902363969099289
Merged-chr17-27857154-4	chr17	27857026	27857226	+	978.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080769, intron 1 of 20)	CpG	619.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	4.94697243759762	5.08343770720451	4.982001765698	4.95742201943337	5.13533933543403	5.01350196273783	4.61447818019128	4.71771660411869	-0.184926476728322	0.581762305477513	0.816420227529328
Merged-chr8-108748406-3	chr8	108748306	108748506	+	928.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	33762.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	4.25398535985796	4.03835789682829	4.37486531342463	4.4483457470251	4.02783646591948	3.98591490947809	3.9046015464583	4.02242421372251	-0.80279322832773	0.0562830191744872	0.248413779489107
Merged-chr10-61399565-4	chr10	61399465	61399665	+	857.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16042.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	3.99666181437277	4.17591201205499	3.56273052589503	4.06234892661932	4.24068965218681	4.12295780717583	4.7192392355836	4.51415568675255	1.09072346380839	0.0179598724887979	0.118984155238286
Merged-chr12-71040598-4	chr12	71040494	71040694	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081195, intron 8 of 23)	PB1|SINE|Alu	24627.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	4.7133408138194	4.24541984653514	4.42483152328039	4.91249198853817	4.85558971661385	4.84830221181023	4.69171138922417	4.37505869985015	0.199830591358545	0.615791399257673	0.83467255086626
Merged-chr5-42978583-4	chr5	42978480	42978680	+	954.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-254883.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	4.30441944259746	4.25145765265551	4.55731084463595	4.68349027474664	4.74628511735585	4.11690041824161	4.60916884429407	4.15534823709132	-0.0510756890195969	0.90411430307617	0.964516711899835
Merged-chr4-155700639-3	chr4	155700553	155700753	+	729.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4162.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	3.55451292666332	3.21766924224202	3.50357043615248	2.81581175647596	3.55321355515941	3.62232659567869	3.38045462231885	3.33383235314282	0.611026679019799	0.304472044049284	0.617066911687048
Merged-chr5-102498970-4	chr5	102498875	102499075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146161, intron 1 of 8)	intron (NM_146161, intron 1 of 8)	17584.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	6.29821546883236	6.37483808368031	6.89366506070009	6.62526756448995	6.69360868815152	6.37442404820762	6.90730935634937	6.67183648018161	0.155168765338107	0.518383916035669	0.779480280212488
Merged-chr6-128854245-4	chr6	128854148	128854348	+	793.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254946, intron 2 of 2)	intron (NM_001254946, intron 2 of 2)	-27933.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	3.73311443119718	3.82129883992315	3.73361802156192	3.68890852679565	3.93429827560438	4.10648073116369	4.01010827830347	3.78551837133634	0.629635640112812	0.149393625974726	0.431614600124002
Merged-chr9-57708573-4	chr9	57708480	57708680	+	904.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153799)	promoter-TSS (NM_153799)	11.0	NM_153799	353190.0	Mm.268104	NM_153799	ENSMUSG00000038957	Edc3	AA517853|Lsm16|Yjdc	enhancer of mRNA decapping 3	protein-coding	4.48302974056063	4.73632284337993	4.34194827055529	4.66194261406959	4.54019872405574	4.89975981137695	4.54944522461941	5.04915229921494	0.419826030802728	0.260985003955991	0.572926972283513
Merged-chr4-59419347-4	chr4	59419223	59419423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 3 of 16)	L1MB3|LINE|L1	19310.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	7.02285008255662	7.40515713262559	7.46949256221748	6.74083279228717	6.79522694840941	6.77172813961566	6.87441374420137	6.53588728224561	-0.60093862268106	0.0126590199419102	0.093325363070453
Merged-chr10-122054627-4	chr10	122054531	122054731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7316.0	NM_001081037	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	7.89426814397569	8.06412716028692	8.13316886004322	8.14687878428005	8.1257872642333	8.10999612308731	8.0633544691923	8.23998083559414	0.0875079735254779	0.582823305224662	0.816777579274426
Merged-chr1-191021350-4	chr1	191021236	191021436	+	836.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081259, intron 1 of 9)	intron (NM_001081259, intron 1 of 9)	-4015.0	NR_027298	100125339.0	Mm.472263	NR_027298	ENSMUSG00000097845	A230020J21Rik	-	RIKEN cDNA A230020J21 gene	ncRNA	4.25303290776623	4.5994231571766	4.29817659325008	4.13455239069036	4.12905525908196	3.88919741716262	4.27880458327841	4.56915937094681	-0.215971524304422	0.61634548660985	0.834943450262974
Merged-chr3-10273364-4	chr3	10273257	10273457	+	911.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029310, intron 1 of 5)	Lx8|LINE|L1	-19105.0	NM_001357160	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	4.99199130064758	4.56483917069411	4.99283296801967	5.46722225300801	4.54251010970667	4.90783723387684	5.15580711723146	4.98942886247944	-0.291587740667443	0.451552683663582	0.736133673915307
Merged-chr17-84342579-4	chr17	84342501	84342701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	LTR40b|LTR|ERVL	123607.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	5.82519122667214	5.61579948372389	5.93797923460559	6.22137424394066	5.65993563572019	5.35268281786274	5.92866907634729	5.74997956269437	-0.396444842111494	0.169964091973527	0.462912195481891
Merged-chr10-18197411-4	chr10	18197278	18197478	+	975.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195036, intron 3 of 20)	intron (NM_001195036, intron 3 of 20)	13512.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	4.74785861142463	5.10152811357741	5.0851072287813	4.97376066480538	5.52833086558618	4.84174620920444	4.99328825596073	5.26477803325512	0.406148078123807	0.229673323736994	0.538806153728468
Merged-chr5-5658871-1	chr5	5658771	5658971	+	585.0	f0_balb.idr	intron (NM_172447, intron 1 of 22)	Lx3_Mus|LINE|L1	5361.0	NM_172447	207686.0	Mm.319007	NM_172447	ENSMUSG00000040473	Cfap69	4921525K03|A330021E22Rik|AI427898	cilia and flagella associated protein 69	protein-coding	3.02873878606539	3.06723032691742	3.02913261160401	3.0247106243513	2.76687471871731	2.80517342841893	2.95909915942093	3.08429366417917	-0.570457476121541	0.343639334421728	0.652264111594778
Merged-chr10-44149119-3	chr10	44149023	44149223	+	896.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21324.0	NR_001582	70365.0	Mm.87073	NR_001582	ENSMUSG00000091358	Speer5-ps1	1700007C10Rik|SPEER-5|Speer5-ps	spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1	pseudo	3.53793261652094	3.46708729422283	3.41836960358536	3.9185085750383	3.75722919327926	3.53248515468594	3.68473316683883	3.88520510889702	0.309729551745893	0.54841836370593	0.797399001311934
Merged-chr17-47767294-4	chr17	47767212	47767412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-18432.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	6.28026544157436	5.55161738158687	5.70147154900447	6.01457913710533	5.79907760109145	5.76987832657171	5.4753388497817	6.17337530849075	-0.146625685250794	0.626624989693177	0.840684952245229
Merged-chr17-69199121-2	chr17	69199021	69199221	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	39765.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	2.78258120923572	2.68877758653787	2.78293537314188	2.46628246304036	2.62625982951173	2.75862315661999	2.77269156752188	3.00995419012768	0.571941856008765	0.384121087602534	0.685711004801765
Merged-chr5-99279157-4	chr5	99279063	99279263	+	687.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26236.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.63291033434339	3.31140660507477	3.28041798221335	3.21244931462863	3.39071462256193	3.13411571189626	3.32429209124645	3.09189916479847	-0.419591499033904	0.454453566526249	0.738275714065317
Merged-chr16-56029782-4	chr16	56029704	56029904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024622)	promoter-TSS (NM_001024622)	-87.0	NM_001356450	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	8.05391914880427	8.24490064744845	7.83034388729532	8.12381409441281	8.35222067576712	8.25922815075283	8.50395616210739	7.82506053757038	0.237419646254255	0.22863093096529	0.537456249729301
Merged-chr1-36570161-4	chr1	36570033	36570233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-11752.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	5.56076973401128	5.99922675755818	6.16222275352139	5.1971089953259	6.31451370903108	6.13869977584178	6.07428061688832	5.33348770102415	0.385927580072748	0.26879681649094	0.580394011861325
Merged-chr11-114998148-3	chr11	114998019	114998219	+	766.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134158, intron 3 of 3)	intron (NM_134158, intron 3 of 3)	3761.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	3.03560780882468	3.11647995131808	2.97710728412105	2.98346004675594	3.01658809113073	2.9562123061214	2.90589639631971	2.84959084463808	-0.391698270414247	0.50549204626843	0.771488881809541
Merged-chr19-46003475-4	chr19	46003385	46003585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176785)	promoter-TSS (NM_176785)	7.0	NM_176785	20170.0	Mm.101110	NM_176785	ENSMUSG00000074811	Hps6	5330434M19Rik|BLOC2|ru	HPS6, biogenesis of lysosomal organelles complex 2 subunit 3	protein-coding	7.20948604865053	7.49837230884554	7.01307642979764	7.01831739461073	6.89375629791355	7.02964599492104	7.01475928534674	7.00812953036251	-0.292029255391523	0.156004817566946	0.441872937110929
Merged-chr7-81162567-4	chr7	81162470	81162670	+	851.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004184, intron 12 of 17)	intron (NM_001004184, intron 12 of 17)	47771.0	NM_001004184	434203.0	Mm.389909	NM_001004184	ENSMUSG00000025726	Slc28a1	Cnt1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	protein-coding	4.06041092446337	3.80907129554192	3.49810166328027	3.71178253058241	4.24183755240772	4.23180588442659	4.21215373342207	3.9635939608655	1.05005390286122	0.0184483620417737	0.121350703425877
Merged-chr14-69862678-4	chr14	69862585	69862785	+	897.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 3 of 6)	L2a|LINE|L2	22278.0	NM_028526	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	4.06429625307739	4.11507333692717	3.90447723978626	4.25084161069363	4.4661391913494	4.46410239095284	4.04798844456336	4.24939758401784	0.540722680012604	0.193926867053469	0.494240436271961
Merged-chr2-79036497-4	chr2	79036409	79036609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	166831.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	6.78661417424849	6.4003179644275	6.51403090971603	6.9766151599102	6.5582093653195	6.67379055536615	6.69764754228585	6.52625045535616	-0.130674619701421	0.571070737401148	0.810348982482694
Merged-chr8-78821052-4	chr8	78820937	78821137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001191004, intron 1 of 4)	CpG	115.0	NM_001191004	78651.0	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	6.99728337968694	6.78373933249769	6.93570741017586	6.94407777228007	6.79058144013735	6.93282275663239	6.76540936164382	7.11000643168375	-0.0209525105687902	0.916391308065458	0.969008184282486
Merged-chr17-31693411-2	chr17	31693315	31693515	+	660.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15484.0	NM_001278570	12954.0	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	3.10946673579058	2.94764383631468	3.04503974382722	2.69298375908329	3.26585965347525	3.56252583897521	3.15941043630337	3.44133702795443	1.66238315554002	0.00461959642034549	0.0448042313126818
Merged-chr5-88553341-4	chr5	88553289	88553489	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1073.0	NM_023054	65961.0	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl-1|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	4.6985145995606	4.30388946394693	5.01050647650513	4.78528098365964	4.72183373386609	4.79357738222452	4.78870837630764	4.84388526210363	0.128708361034459	0.720708176001774	0.888396101570344
Merged-chr11-19021150-1	chr11	19021050	19021250	+	748.0	f0_balb.idr	Intergenic	Intergenic	-2181.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	3.59789996656227	3.50500955972069	3.59841826835914	3.57699796656	3.21361248192824	3.29205721781231	3.53191367866611	3.74086631015049	-0.37588282080546	0.471208392433976	0.749734937523649
Merged-chr15-75862287-4	chr15	75862199	75862399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026960)	promoter-TSS (NM_026960)	-40.0	NM_026960	69146.0	Mm.27385	NM_026960	ENSMUSG00000022575	Gsdmd	1810036L03Rik|AW558049|DF5L|Dfna5l|Gsdmdc1|M2-4	gasdermin D	protein-coding	6.35940476115519	6.67754447269968	5.97722732151226	5.94716284432753	6.95722934570639	6.78561588570404	6.56101005647047	6.29959250921995	0.599540552262148	0.0296128440773661	0.165812824778386
Merged-chr17-86495056-4	chr17	86494957	86495157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 9 of 14)	intron (NM_011104, intron 9 of 14)	-207879.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	6.62857156507955	6.64011436637856	6.71341063289011	6.70132399446818	5.67499290249411	6.16386101094343	6.25065297054239	5.85406812392462	-1.02486087994527	2.06922420300522e-05	0.000524520333139988
Merged-chr7-80688247-4	chr7	80688106	80688306	+	844.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173863, intron 1 of 14)	CpG	671.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	4.29064941240574	4.14692663883391	4.15638331812471	3.67315348432345	4.24783046521826	4.13140981921813	4.22859733650986	4.62348541329363	0.624418741716679	0.157219714840656	0.443676840686984
Merged-chr16-11005637-1	chr16	11005537	11005737	+	623.0	f0_balb.idr	Intergenic	B3|SINE|B2	-3261.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	3.64698383712519	3.11603918200744	3.64758020161919	2.97764878824194	3.42661179108804	3.33935541988071	2.94075299455344	3.34192947263733	-0.363636577623336	0.562630815839158	0.805719838254776
Merged-chr7-38271404-4	chr7	38271238	38271438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025390)	promoter-TSS (NM_025390)	10.0	NM_025390	66161.0	Mm.22284	NM_025390	ENSMUSG00000030423	Pop4	1110023P21Rik|Rpp29	processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	5.91649417641471	6.14284602941833	5.9842601596258	6.19409731604204	5.74442251121476	5.87097625803733	6.11508653208669	5.68927944680364	-0.340206171194434	0.178791393353014	0.474751644686794
Merged-chr8-119792037-4	chr8	119791937	119792137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13621.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	6.69641308051017	6.4089193589006	6.8241718447598	7.10250268070839	6.48997141938176	6.33069533127935	6.73501502754421	6.77855969116218	-0.285742924089723	0.244696402459802	0.555808536831526
Merged-chr16-57345001-4	chr16	57344903	57345103	+	864.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025599, intron 1 of 9)	MERVL_2A-int|LTR|ERVL	-8274.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	3.52453689941528	3.64781734033053	3.74608363012678	3.74189366766304	3.8001151261009	3.3734096348093	3.95932956448702	3.93213308891414	0.345879577686708	0.481179376890436	0.756451771709352
Merged-chr13-20292523-4	chr13	20292441	20292641	+	954.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 13 of 21)	intron (NM_080288, intron 13 of 21)	-180449.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	4.93221220485521	5.05438766146495	5.16043676551912	5.08972468211103	4.9536397323713	5.03427772013265	4.71968624950964	4.81837430100818	-0.345304455827669	0.277179122612868	0.589300206200641
Merged-chr12-35833475-4	chr12	35833384	35833584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92137.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	7.07531433428869	7.05012234183758	7.18401463350928	7.2112041144144	6.58680607034397	6.36372755882194	6.46963956477869	6.2446360718179	-0.997558152885668	1.37941005602421e-06	4.68440020886198e-05
Merged-chr2-25422029-4	chr2	25421903	25422103	+	855.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1239.0	NM_001289453	14347.0	Mm.1203	NM_013524	ENSMUSG00000036587	Fut7	AI853193|FTVII|Fuc-TVII|FucT-VII	fucosyltransferase 7	protein-coding	2.90343540653496	3.10805589772361	2.97512725119922	2.70330439152771	3.45033269055717	3.34425590877576	3.09631324319642	3.62000965612257	1.86194467980983	0.00163633853304326	0.0200194122453568
Merged-chr4-148676393-4	chr4	148676299	148676499	+	939.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33082.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	4.81412573970855	4.78088235836543	4.58232759504628	4.27295248617196	5.72185538873953	5.79518956036539	6.0929822311837	5.04650541350179	2.04311297327185	1.18252990962417e-08	6.19818088638723e-07
Merged-chr9-106373092-4	chr9	106372958	106373158	+	838.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153459, intron 2 of 2)	intron (NM_153459, intron 2 of 2)	4426.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	3.22797709017358	3.64754189126651	3.35555575561855	3.36254293485034	3.48722431031415	3.46949737247243	3.56327165040912	3.72051052589241	0.511057163228338	0.315769921761836	0.627651138259863
Merged-chr11-45944065-2	chr11	45943965	45944165	+	897.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028185, intron 1 of 3)	intron (NM_028185, intron 1 of 3)	870.0	NM_028185	72290.0	Mm.249827	NM_028185	ENSMUSG00000044847	Lsm11	2210404M20Rik|AV079530	U7 snRNP-specific Sm-like protein LSM11	protein-coding	3.02134657673024	3.20367607437579	3.02171574287433	2.9319793676716	2.96128628692123	3.19088782920215	2.88566234777173	3.07958656598088	-0.054438873334027	0.925770837126855	0.972655169390276
Merged-chr2-80579540-4	chr2	80579480	80579680	+	872.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290745, intron 1 of 31)	intron (NM_001290745, intron 1 of 31)	1602.0	NM_001290745	50884.0	Mm.25203	NM_016965	ENSMUSG00000027002	Nckap1	C79304|H19|Hem-2|Hem2|Nap1|mKIAA0587|mh19|p125Nap1	NCK-associated protein 1	protein-coding	3.60567149017	3.7379859821987	3.80928355872717	3.63304725625254	3.58176085806958	3.66594954323056	3.69644633103659	3.60420588186512	-0.185173658270486	0.691176777192432	0.87434437438054
Merged-chr16-33166492-1	chr16	33166392	33166592	+	574.0	f0_balb.idr	Intergenic	B3|SINE|B2	-18579.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	2.93523696129196	3.38763141305786	2.93550974186078	3.13432763214501	3.06147841114761	3.17656021053695	3.28601030061131	3.48999700081786	0.557916712524732	0.348554644575139	0.656292768402628
Merged-chr1-55430828-3	chr1	55430736	55430936	+	987.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	24890.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	4.15430323980536	4.05240389486758	4.38967839644979	4.40733050584018	3.3688066399438	3.9351392704156	3.55548482035196	3.91726325100946	-1.59304919931104	0.00129830353945551	0.0166118906408239
Merged-chr19-56265288-3	chr19	56265185	56265385	+	781.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-22627.0	NM_001329936	226243.0	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	3.91683480333202	4.19893232020057	3.91741597945246	3.92225198588376	3.76552023752815	3.4589504682698	3.59087662023357	3.81850410719133	-0.968002492815013	0.0432541365571439	0.211641891107403
Merged-chr6-34476219-4	chr6	34476128	34476328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007563)	promoter-TSS (NM_007563)	-128.0	NM_007563	12183.0	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding	8.42980287746309	8.21006142270057	8.25415897565663	8.42769303587466	8.23171234202394	8.22546901901853	8.18035598617287	8.15917983474824	-0.174624073078745	0.258158745992569	0.569968613835775
Merged-chr2-28478816-3	chr2	28478699	28478899	+	915.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10733.0	NM_001166031	118451.0	Mm.294951	NM_080452	ENSMUSG00000035772	Mrps2	1500019M10Rik	mitochondrial ribosomal protein S2	protein-coding	3.41756929002562	3.4647543425949	3.52045478048889	3.4460428052578	3.0972996140335	3.41990369254759	3.10990643159918	3.18342283177502	-0.964325187663287	0.0760007280523176	0.297838946738032
Merged-chr3-96596946-4	chr3	96596831	96597031	+	940.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024851, intron 1 of 1)	intron (NM_001024851, intron 1 of 1)	295.0	NM_001024851	545554.0	Mm.267664	NM_001024851	ENSMUSG00000049097	Ankrd34a	AW060394|Ankrd34	ankyrin repeat domain 34A	protein-coding	4.19990667566103	4.86232064579014	4.35929487695401	4.68334557675944	4.78620933499808	4.67899370031471	4.72373516249103	5.22913148393638	0.645544313453982	0.101374188178212	0.349341562610912
Merged-chr8-105340032-4	chr8	105339919	105340119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	7951.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	6.96223679600925	7.10921428532786	6.76694466185796	7.0530004572164	7.30240706393181	6.85068600248287	7.30523099983636	7.02184564238844	0.215258668892902	0.301519081671757	0.613580728295328
Merged-chr12-102733565-4	chr12	102733470	102733670	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10091.0	NM_001142937	64113.0	Mm.291222	NM_022323	ENSMUSG00000096458	Moap1	AA987038|Map-1|Pnma4	modulator of apoptosis 1	protein-coding	4.06609398612213	3.97980468144337	3.5781131468376	3.96950719086508	4.10133013391266	3.99286907177901	4.25445837066146	3.86933956757749	0.39877581343578	0.373213221346839	0.676848345960219
Merged-chr15-98417383-4	chr15	98417286	98417486	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	18941.0	NR_015496	73302.0	Mm.272760	NR_015496	ENSMUSG00000099353	1700031M16Rik	4930413L20Rik	RIKEN cDNA 1700031M16 gene	ncRNA	4.03980943839166	4.47195876137511	4.18942664851055	4.02787122938257	4.16223072525628	4.31623966789324	4.12388178268249	4.58581831714209	0.285702488744988	0.493991070443528	0.764719234517178
Merged-chr11-104442955-4	chr11	104442850	104443050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081045)	promoter-TSS (NM_001081045)	-659.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	7.13387824571378	7.28547684646697	6.69053002928111	7.09603500090425	7.07379211843976	6.96163801676269	7.20744897036136	6.97328022110695	-0.020546285672637	0.921721535233909	0.970941268050458
Merged-chr10-50763161-4	chr10	50763067	50763267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 34 of 41)	intron (NM_198007, intron 34 of 41)	-132484.0	NM_011376	20464.0	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded family bHLH transcription factor 1	protein-coding	5.97469024775004	6.10902332169947	6.1655816538316	6.06715191253575	6.50612040591135	6.05858027340177	6.11440164300929	5.87710829665307	0.148284085559117	0.559732146100775	0.803989779751616
Merged-chr4-12460355-3	chr4	12460260	12460460	+	644.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-288345.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	3.40856699603366	3.18758648573613	3.35001647567534	3.61038906825548	3.53624624456748	3.40064349046303	3.65303362843278	3.6190145757281	0.475186518257398	0.363958774857346	0.668927433267172
Merged-chr8-41100532-3	chr8	41100422	41100622	+	758.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 1 of 13)	MTC|LTR|ERVL-MaLR	14145.0	NM_001286413	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	2.89601609469463	3.08604314865774	3.31454259898885	3.1466529567491	3.30574693694901	3.36938676802282	3.78975674300945	3.84621734954911	1.65147915445478	0.00450858371796482	0.0439973238910088
Merged-chr9-108809442-4	chr9	108809340	108809540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030729, intron 1 of 12)	ERVB4_1C-LTR_Mm|LTR|ERVK	1060.0	NM_030729	80987.0	Mm.192416	NM_030729	ENSMUSG00000032598	Nckipsd	AF3P21|DIP1|ORF1|SPIN90|WASLBP|WISH|Wasbp	NCK interacting protein with SH3 domain	protein-coding	5.25182903580095	5.39171634525382	5.90008920854984	5.4885358751895	5.47073247042668	5.58611279015331	5.69901224622708	5.65195276037944	0.125904643115985	0.66322952160561	0.860454250420379
Merged-chr7-141176378-4	chr7	141176273	141176473	+	783.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3522.0	NM_001172100	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	3.80928746743591	4.19694248697884	3.75307462966286	3.92641717792296	4.35364423372046	4.03837213611483	4.00064419603885	4.27476648745384	0.652746486773874	0.13534566933531	0.409581624829642
Merged-chr4-65565668-4	chr4	65565568	65565768	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207109, intron 17 of 22)	intron (NM_207109, intron 17 of 22)	-39318.0	NM_053084	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	5.17373535684059	5.34402526014453	5.33569523251047	5.61839012559227	5.47081108258902	5.00635976830559	5.67186670948599	5.50154024753151	0.0783017768776164	0.801484560328172	0.923404760680451
Merged-chr11-82073193-4	chr11	82073106	82073306	+	932.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15374.0	NM_011330	20292.0	Mm.4686	NM_011330	ENSMUSG00000020676	Ccl11	Scya11|eotaxin	chemokine (C-C motif) ligand 11	protein-coding	4.75145143363729	4.65604562216839	4.08502445398268	3.80978785386201	4.54479465057176	5.08432522330467	4.54351735568932	4.56224270488583	0.709910316430847	0.119193439072435	0.381958842055503
Merged-chr2-51305548-5	chr2	51305375	51305575	+	916.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63644.0	NR_040636	329404.0	Mm.417725	NR_040636	ENSMUSG00000086349	Gm13497	A730015I17	predicted gene 13497	ncRNA	4.64334519677832	4.75860534362276	5.35724683239184	5.52107695111137	4.8911077048719	4.78007534947395	4.78406023448898	4.24068104046214	-0.862754726412925	0.0380645748711304	0.195356433394779
Merged-chr17-34637591-2	chr17	34637492	34637692	+	956.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7291.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	3.18277832316393	3.52816615508694	3.42833602521368	3.2352626210664	3.38885375585012	3.70387365446391	3.35850955415625	3.53355641622898	0.521353843293339	0.316971795139256	0.628905690750891
Merged-chr19-10842454-4	chr19	10842349	10842549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023044)	promoter-TSS (NM_023044)	-95.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	8.41714660281946	8.55664518766003	8.33957589884705	7.9930484784797	8.36496796919214	8.41548282870557	8.24516794681241	8.2498951662465	-0.0185688311467668	0.917948180742492	0.969760089182615
Merged-chr10-118101304-4	chr10	118101202	118101402	+	888.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40485.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	4.29000501418757	4.45787624986322	4.66270572988375	4.54177648610784	4.71048932795173	4.36912587664106	4.48988349964687	4.33509274145001	-0.00290184868213334	0.993861665154237	0.997702270136287
Merged-chr12-85497499-4	chr12	85497405	85497605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23615.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	6.21177209618054	6.61332450307591	6.34617713148848	6.40666126845767	6.45673116299232	6.21904219746633	6.277245600418	6.2672526051541	-0.135201542925485	0.551038284121782	0.798799956417849
Merged-chr2-120973043-1	chr2	120972943	120973143	+	614.0	f1_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2328.0	NM_009461	22222.0	Mm.389330	NM_009461	ENSMUSG00000027272	Ubr1	AI504731	ubiquitin protein ligase E3 component n-recognin 1	protein-coding	3.33592104986477	3.41067104844443	3.39391821260479	2.98261971122852	3.49857496253698	3.45134954504006	3.26439790962562	3.64612526290552	0.674611442400968	0.21571943971435	0.52198443022259
Merged-chr2-154773210-2	chr2	154773110	154773310	+	857.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR40c|LTR|ERVL	-17900.0	NM_001139512	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	3.47833337064482	4.05165210372537	3.53698027962316	3.10985514971991	3.73558818505098	3.91721838952215	3.52285417190309	3.21613225631157	0.0924176885024984	0.87700930617929	0.953885505336535
Merged-chr16-97472685-4	chr16	97472588	97472788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020622, intron 7 of 7)	L1MB7|LINE|L1	-9782.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	6.39227965349929	6.87008883677661	7.01211977231985	6.88750367181523	6.67105250761396	6.84267586053729	6.74859039864786	6.29011271668511	-0.229813671312742	0.333736423300938	0.644520998861314
Merged-chr14-55900211-3	chr14	55900094	55900294	+	805.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001082975)	promoter-TSS (NM_001082975)	38.0	NM_001082975	654795.0	Mm.486218	NM_001082975	ENSMUSG00000022223	Sdr39u1	2310014G06Rik	short chain dehydrogenase/reductase family 39U, member 1	protein-coding	3.4897557174297	3.47529535547212	3.32937362307112	3.08420917741533	2.79952963372704	3.25997045276743	3.25846636363104	3.58498329126746	-0.349948212456325	0.573946823973991	0.811973307930812
Merged-chr1-152612893-4	chr1	152612802	152613002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	12315.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.92586738137731	5.36548419188382	6.25645498112792	6.36195621254426	5.59681666258531	5.88687338920197	5.75685192729676	5.78219982845399	-0.461080882856852	0.135659723302691	0.410043884876734
Merged-chr2-71500056-4	chr2	71499982	71500182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025633, intron 1 of 9)	intron (NM_025633, intron 1 of 9)	-29363.0	NM_010053	13390.0	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	7.12510299535428	7.34958233371909	6.81332593895835	7.22285798412713	7.24019602882459	7.13051360220613	6.86425583059149	7.07431711925847	-0.0829672453379593	0.691488441557519	0.87454056920491
Merged-chr16-90377626-1	chr16	90377526	90377726	+	585.0	f0_balb.idr	Intergenic	Intergenic	-8771.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	3.16465637830712	3.11374744282052	3.38920306255892	3.17093457890651	3.16026403832129	3.2767469863907	3.02728747721491	3.48580044720523	0.134097494502048	0.810057656220799	0.926776956547369
Merged-chr15-6708882-3	chr15	6708786	6708986	+	885.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030168, intron 2 of 37)	CpG-4767	505.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	4.02156576511399	4.10159118466245	4.47364609321957	3.66632070774015	4.00586509735007	4.09634767478486	3.84995722369665	4.202876884113	-0.111252922017148	0.812799338479002	0.927656717651261
Merged-chr7-4657720-3	chr7	4657652	4657852	+	685.366699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172894, intron 1 of 23)	L2c|LINE|L2	1198.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	3.27823872907314	3.29866570479878	3.16242117765184	3.13132545681855	3.15798679857423	3.14414240941591	3.15126526543359	3.43324113198155	0.0416916625775979	0.939008119593279	0.977881364615113
Merged-chr5-43801981-3	chr5	43801903	43802103	+	817.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie9|DNA|hAT-Charlie	-16890.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	3.55206054243599	3.56352949583986	3.93320532984982	3.9404807188241	3.34089178582564	3.48913049896004	3.36326774436953	3.55060704767276	-1.09467342646167	0.0335761838872008	0.180412107866465
Merged-chr1-183266275-4	chr1	183266162	183266362	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-30798.0	NM_181732	108909.0	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	4.96480624721593	5.47106001326471	6.04787950054685	5.39859172855182	5.60494402300123	5.32569643493859	5.54453285155133	5.48867498520395	-0.0475796474969144	0.887833180982346	0.957936147561464
Merged-chr17-6747058-4	chr17	6746978	6747178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 7 of 12)	intron (NM_009510, intron 7 of 12)	35702.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	8.15790085260378	8.36204397699181	8.27031583758018	8.04519355533406	8.15742614156467	8.13128427847509	7.92271120034123	8.21932432494834	-0.123260536591679	0.462345152688715	0.743897141057213
Merged-chr16-17881047-3	chr16	17880939	17881139	+	869.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109750, intron 1 of 9)	B4A|SINE|B4	10689.0	NM_010048	13356.0	Mm.254515	NM_010048	ENSMUSG00000003166	Dgcr2	9930034O06Rik|DGS-C|Dgsc|Idd|Lan|Sez12|mKIAA0163	DiGeorge syndrome critical region gene 2	protein-coding	2.90153915883474	2.90820657099995	3.017888611719	3.0515897517543	2.77978621010585	2.65959187546363	3.0593655635657	2.70467963058193	-0.739543541954745	0.248309019479962	0.559414345781337
Merged-chr5-43853441-4	chr5	43853325	43853525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15384.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	6.61914701433305	5.99698909860473	7.02702118437072	6.63310921490149	5.78636991219882	5.52625785955149	6.0907372186475	6.03090193986435	-1.12394844776135	0.000154991599333672	0.00293174250570593
Merged-chr14-59365486-4	chr14	59365385	59365585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199015)	promoter-TSS (NM_199015)	5.0	NM_199015	219132.0	Mm.479285	NM_199015	ENSMUSG00000068245	Phf11d	D14Ertd668e|Phf11|Phf11l	PHD finger protein 11D	protein-coding	7.69368001073042	7.57248649742288	7.80520354683018	7.96467330470487	7.61146436083546	7.73326500160412	7.70572293870522	7.63936041490998	-0.137334876287952	0.437175021483413	0.725557644444268
Merged-chr5-5514898-4	chr5	5514813	5515013	+	942.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022890)	promoter-TSS (NM_022890)	63.0	NM_022890	64945.0	Mm.40132	NM_022890	ENSMUSG00000046798	Cldn12	-	claudin 12	protein-coding	4.20910361410113	4.12760125414813	4.72035159867241	4.66056907809585	4.3796451461882	4.06697835817037	4.32764724580744	4.30029141321381	-0.438276345378695	0.295542506423945	0.607486818489414
Merged-chr18-4891999-1	chr18	4891899	4892099	+	560.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	79513.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	3.16760095385019	3.3382467041479	3.66565632004566	3.24286539257757	3.34427844603996	3.40979186429607	3.50538468415351	3.51809240368963	0.289234808328724	0.583909506999523	0.817485282428486
Merged-chr12-34665000-3	chr12	34664908	34665108	+	715.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-136119.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	3.49245739564593	3.31410971826159	3.1236063405516	3.26304981713521	3.48470366562177	3.71412458343373	3.53064789579274	3.54345994161679	0.902310737772434	0.0762345032336842	0.298263009064823
Merged-chr6-90740850-4	chr6	90740749	90740949	+	788.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	-24320.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	3.73958922415858	3.45687807522529	3.41957907156572	3.5631845870666	3.54586591443483	3.26461371085977	3.72378096320437	3.82879658939422	0.183687399820981	0.720578727784756	0.888339769385162
Merged-chr13-60612353-4	chr13	60612241	60612441	+	931.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	10130.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	4.42655888332752	4.64147517221044	4.10479257967683	4.18004179499525	4.39674373251497	4.17677339406218	4.23439174527097	4.5774296365851	0.0182902172385962	0.964274371146558	0.987309283922085
Merged-chr10-126979589-6	chr10	126979538	126979738	+	922.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113470, intron 1 of 7)	CpG	921.0	NM_001113470	52468.0	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	4.31642348361258	4.00999688897899	4.55795811659572	3.96601013867874	4.03627450929448	4.40151189872915	4.38197277911227	4.7250934823162	0.432313900789656	0.323692265822885	0.635168213844824
Merged-chr1-59119869-4	chr1	59119744	59119944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037812)	promoter-TSS (NM_001037812)	-38.0	NM_001037812	381259.0	Mm.261275	NM_001033449	ENSMUSG00000038079	Tmem237	AI853305|Als2cr4|Gm972	transmembrane protein 237	protein-coding	6.52482387043604	6.4857587825772	5.91838943421929	5.9985705706954	6.93956560608451	6.7678212065075	7.0675258281131	6.90575559352853	0.97603136072039	4.66517129640977e-05	0.00106362020405878
Merged-chr18-84274057-4	chr18	84273973	84274173	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	185915.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	5.15989995773176	4.89467952512423	5.62777936075033	5.50632023655301	4.71658171161563	4.97989759148153	4.73588511093908	5.09277916099802	-0.858489682405522	0.0138209041593971	0.0991004362670346
Merged-chr18-50113008-5	chr18	50112897	50113097	+	854.434265	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-15204.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	3.82713477832323	4.00357788963528	4.25980458962335	4.04112133232373	4.35942264596214	4.11115134481546	4.06772772115472	3.9346840213097	0.249939725476884	0.560336950811008	0.804393115014757
Merged-chr3-103916671-4	chr3	103916570	103916770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356557, intron 1 of 6)	intron (NM_001356557, intron 1 of 6)	2550.0	NM_172684	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	5.28219459731841	5.37459373468555	5.58533112511174	5.77355553505395	5.79600436423162	5.58975361935731	5.88466365086005	5.75686414444362	0.376121243674616	0.181590121945237	0.47824687501256
Merged-chr12-110855610-2	chr12	110855519	110855719	+	710.5	f0_balb.idr|f1_balb.idr	exon (NM_001199785, exon 2 of 7)	exon (NM_001199785, exon 2 of 7)	5340.0	NM_028365	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	3.52127682788802	3.56486558556626	3.29077532596268	3.7990340763663	3.23087014085161	3.46555794754602	3.39877291321591	3.51979136689164	-0.56541559198236	0.288521732684724	0.600523083536054
Merged-chr6-145274308-4	chr6	145274207	145274407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23755.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	7.16657336634508	7.2224409338674	7.71382578013459	7.72777546231255	7.33208909615993	7.2088868562339	7.3670446375169	7.30746995042051	-0.250070531249117	0.235427676337908	0.545420732133053
Merged-chr15-30611331-2	chr15	30611282	30611482	+	632.625	f0_balb.idr|f0_c57.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-427744.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	3.54394035518573	3.65293734371071	3.54439884041941	3.63403717503372	3.54697902769384	3.71856722380559	4.04140800931587	3.59908214380287	0.425813671378631	0.378243638920023	0.680836637029342
Merged-chr4-126136956-4	chr4	126136873	126137073	+	934.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 8 of 10)	intron (NM_028800, intron 8 of 10)	-11030.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	4.30531833802062	4.61054081574786	4.73671108683293	4.41132398058128	4.31318774136696	4.56878387901771	4.19164689859591	4.30334137993537	-0.402194240103506	0.299181551544068	0.611487916419371
Merged-chr5-72831171-3	chr5	72831066	72831266	+	748.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 1 of 17)	HAL1|LINE|L1	37282.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	3.5038500081512	3.37130538509209	3.50435180343565	3.55101114659497	3.44721946768729	3.05115486622681	3.27243177075918	3.34094898441806	-0.681517026174549	0.209191540906893	0.513577117801228
Merged-chr1-189871772-3	chr1	189871570	189871770	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008976, exon 19 of 19)	3' UTR (NM_008976, exon 19 of 19)	50621.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	3.19919823006527	2.86757056307232	3.60361013324001	3.05078115134668	2.79571267570834	2.79777568401294	2.60309804678663	2.83415272145332	-2.00627005848566	0.0048486498244859	0.0464623109662199
Merged-chr8-79370771-4	chr8	79370644	79370844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 2 of 6)	intron (NM_008539, intron 2 of 6)	28724.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	5.21602858395391	5.37827958240791	5.33818632922447	5.54766261118751	5.06757226667728	5.11211390710304	5.28261524875904	5.21333718854515	-0.408356456708895	0.16584109218877	0.456773714387048
Merged-chr1-86154736-4	chr1	86154659	86154859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310702)	promoter-TSS (NM_001310702)	-21.0	NM_030184	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	7.57644850015984	7.44307284400746	7.22505944348672	7.5295207781115	7.54274650755227	7.74606064367667	7.75692551671716	7.59858855904411	0.271306083471436	0.130798878986858	0.402600363563484
Merged-chr1-181950913-4	chr1	181950809	181951009	+	866.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010135, intron 3 of 14)	intron (NM_010135, intron 3 of 14)	69071.0	NM_010135	13800.0	Mm.87759	NM_008680	ENSMUSG00000022995	Enah	Mena|NDPP-1|Ndpp1|WBP8	ENAH actin regulator	protein-coding	4.11479357109831	3.95699313244536	4.21227791498724	4.37926765182541	4.70769012665384	4.1350607518222	4.23932730335541	4.46256985379544	0.54724369077391	0.195801352391923	0.496672200168623
Merged-chr8-69716529-4	chr8	69716424	69716624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001359086, exon 1 of 6)	5' UTR (NM_001359086, exon 1 of 6)	378.0	NM_001039967	66869.0	Mm.334581	NM_181274	ENSMUSG00000054648	Zfp869	1200003I07Rik	zinc finger protein 869	protein-coding	7.27631728508596	7.65262451840135	6.70383138641466	7.09429270447896	7.540650468335	7.4865155247106	7.45650041669478	7.42365873858824	0.33596984661196	0.143824247063483	0.422346882368564
Merged-chr10-42245081-4	chr10	42244980	42245180	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	31662.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	4.01563634729421	4.16899662135189	5.04173534937381	5.18715580742665	4.58327065590945	4.42604396163578	4.50533498708247	4.71922935513655	-0.319479265062358	0.506103458433464	0.77186284286763
Merged-chr11-107469835-4	chr11	107469734	107469934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	CpG	886.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	5.64565165858202	5.49323944016007	5.43056203685957	5.32227082613481	5.69387475967289	5.45171932358029	5.66639730871135	5.56595508196242	0.23943773738758	0.378361599233098	0.680928428404154
Merged-chr2-45239932-3	chr2	45239815	45240015	+	889.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122473.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	3.3492308687699	3.45332843833973	3.23118989463951	2.90832816813606	3.25336233718654	3.52162172953189	3.27926952157316	3.50721848088963	0.540508902381372	0.338978708902058	0.648223242193853
Merged-chr10-99485762-3	chr10	99485676	99485876	+	759.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123395.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	3.40811829038282	3.23878113334437	3.29348921752974	3.69881280792092	3.31067836430995	3.40538948810846	3.49959992913735	3.29187744078574	-0.209822050072537	0.698900920232502	0.878535427836279
Merged-chr14-66871705-4	chr14	66871523	66871723	+	929.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001034881)	TTS (NM_001034881)	2773.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	4.07016606514407	3.86841992931487	3.97025056481404	4.29935782765607	4.23267104992134	4.09276199853272	4.1893799971662	4.28938223691271	0.315991875172163	0.454415620931649	0.738247895996421
Merged-chr1-170998887-2	chr1	170998787	170998987	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-20039.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	2.94666775762191	3.15412764413813	2.88725323631485	2.93441276139839	2.64943506325148	2.79465034847588	2.68210331485711	2.88581000277827	-1.09471649816479	0.0882433181698532	0.324050515607077
Merged-chr8-26978708-4	chr8	26978621	26978821	+	994.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001101502, exon 2 of 2)	exon (NM_001101502, exon 2 of 2)	1385.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	5.17709954829377	5.51323397719749	5.14188070617586	4.78177720308952	5.96141615853099	5.96281598490459	5.71542457803722	5.5957667659173	1.13719546702432	0.000233890668020094	0.00413514750596182
Merged-chr3-52048325-3	chr3	52048239	52048439	+	846.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	56667.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	3.14400574508687	3.10957688405638	3.14435250755993	3.3365179407291	3.41542408953488	3.56599754128385	3.32248313243972	3.93538347782036	1.29831100310641	0.0207773012913271	0.131400046967159
Merged-chr8-19563310-3	chr8	19563230	19563430	+	905.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68233.0	NM_139220	246080.0	Mm.207067	NM_139220	ENSMUSG00000037790	Defb7	BD-7|Defb15	defensin beta 7	protein-coding	3.53007274136179	3.53259335543783	3.81588965535372	3.85508740213083	3.2356799408234	3.34500966910508	3.40645334148809	3.16248730549132	-1.44039589746847	0.00750368368899197	0.0641182114404273
Merged-chr6-15626325-4	chr6	15626235	15626435	+	831.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94326.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	3.9440253362491	3.69846447269011	3.94463356480272	3.53531125796336	3.74526881131955	3.56698432988142	4.01420668933909	3.89572874390349	0.107958652977965	0.821839982634701	0.931908305039754
Merged-chr6-135444851-2	chr6	135444743	135444943	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77350.0	NM_001288627	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	2.9573765719194	2.9033468937171	3.31953953617436	2.88781320639117	2.56342183511293	2.94200971837643	2.68660259688637	2.7638671663069	-1.33185833240905	0.0488337332044151	0.228403452347848
Merged-chr3-37584783-3	chr3	37584706	37584906	+	930.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25085.0	NR_130162	75947.0	Mm.109620	NR_130161	ENSMUSG00000085677	4930594O21Rik	-	RIKEN cDNA 4930594O21 gene	ncRNA	3.7312641150002	3.58660105965021	3.4001257908651	4.03741954184628	3.52536844016975	3.69276656966921	3.50729096725069	3.5185076117054	-0.519842015311781	0.315984861977474	0.62783028667765
Merged-chr10-45051313-4	chr10	45051195	45051395	+	867.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15919.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	3.62627843446008	3.73129968832637	3.50672442708069	3.77274440760108	3.97712445410336	3.90799704385291	3.9585985704254	3.73467803122962	0.65872007146897	0.150514816195527	0.433192142653395
Merged-chr4-43820377-4	chr4	43820273	43820473	+	820.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019474)	TTS (NM_019474)	1060.0	NM_019474	29846.0	Mm.377121	NM_019474	ENSMUSG00000110970	Olfr156	MOR262-6|OR37B|Olfr37b|mOR37b	olfactory receptor 156	protein-coding	3.8647006013083	3.87185624478937	4.45167731593441	4.46026166000178	4.05430654946641	4.15007517893459	4.05838334586016	4.16687338829317	-0.255581692178156	0.57072621210544	0.81018968611422
Merged-chr10-8759384-4	chr10	8759286	8759486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	126684.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	7.68822324128488	7.5253371403278	7.90006356024749	7.97703160703999	7.551520532526	7.33497278612309	7.83400060920328	7.47048196874797	-0.299069980243052	0.133537545987521	0.406860242524004
Merged-chr19-7922561-1	chr19	7922461	7922661	+	902.0	f0_balb.idr	intron (NM_134256, intron 3 of 10)	L1_Mus2|LINE|L1	43466.0	NM_134256	171405.0	Mm.326517	NM_134256	ENSMUSG00000067656	Slc22a27	OAT6-L|OAT6-S|Oat9	solute carrier family 22, member 27	protein-coding	3.53933106930207	3.36489214367529	3.69518592780616	3.76727356614231	3.57763440890761	3.27087413566911	3.67950242762565	3.69299235385312	-0.129063899223998	0.802550911302257	0.923936032101707
Merged-chr14-75183037-1	chr14	75182937	75183137	+	783.333313	f0_balb.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	46612.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	4.00039454866647	3.94719904712875	3.81333713125736	3.8906073949921	4.042119042932	3.6484633740143	3.457085092152	3.70601132281721	-0.487767968202526	0.315988456516868	0.62783028667765
Merged-chr7-139402946-4	chr7	139402848	139403048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355162, intron 1 of 15)	L1MB5|LINE|L1	2454.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	6.44277346571092	6.79814167388669	6.35755410515637	5.8918853406553	6.27413572839825	6.30003561357979	6.50672982772698	6.07423981170245	-0.157080149175343	0.570989345738858	0.810336968205487
Merged-chr6-121251405-4	chr6	121251309	121251509	+	900.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011909, intron 1 of 10)	intron (NM_011909, intron 1 of 10)	5503.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	4.162968653391	4.60750391496731	4.3164026533468	4.57424207021644	4.93333814917076	4.74857358311334	4.51634218662752	4.36101425718029	0.498762100435486	0.20649951201843	0.510519685386641
Merged-chr17-43058816-4	chr17	43058702	43058902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 3 of 5)	MTD|LTR|ERVL-MaLR	42247.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	6.58370176275473	6.47393830305818	6.04170954036587	6.63857563908504	6.34345197700234	6.28807613114988	6.50496070050895	6.46896815191865	-0.0945163315343915	0.690210475581464	0.873783751737003
Merged-chr11-23217627-4	chr11	23217524	23217724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38417.0	NM_001035226	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	5.96293529040897	5.62145117658531	5.92194862855589	6.02321879061968	5.65836992670642	5.78401158578284	5.40485790068849	5.60388655495431	-0.458203796931649	0.0866680305597156	0.321182055875983
Merged-chr11-84442405-2	chr11	84442305	84442505	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019816, intron 12 of 12)	intron (NM_019816, intron 12 of 12)	71096.0	NM_019816	56321.0	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	2.98592362127252	3.08239993160385	3.04519177978636	3.32239581126694	2.99410118552724	2.74704940609565	2.71339913249385	3.04360747266558	-1.01554991896454	0.115607137460783	0.376276941667248
Merged-chr19-53157389-2	chr19	53157289	53157489	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013758, intron 1 of 15)	intron (NM_013758, intron 1 of 15)	13392.0	NM_013758	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	3.46750524291015	3.39207342487237	3.3522556276282	3.90146632324599	3.26517197586434	3.46576576517094	3.27936764134157	3.66988846219357	-0.451577060960474	0.417528115327107	0.711309069758146
Merged-chr12-9570161-3	chr12	9570126	9570326	+	606.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045488, exon 2 of 4)	non-coding (NR_045488, exon 2 of 4)	359.0	NR_045488	69420.0	Mm.396193	NR_045488	ENSMUSG00000099360	1700022H16Rik	-	RIKEN cDNA 1700022H16 gene	ncRNA	2.73952986967947	2.75011132865284	2.73987095422818	2.80723536093039	2.51381026625154	2.71578022977015	2.53617010952467	2.6762434780238	-0.784816237742444	0.234783905940479	0.544671297409607
Merged-chr19-29470144-4	chr19	29470029	29470229	+	893.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	intron (NM_021396, intron 5 of 5)	51858.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	3.88301145496646	4.32540153765683	4.1013451980685	4.2687904650331	4.48113206324311	4.41541689258791	4.17993519617139	4.36940407956327	0.49019902723318	0.227524883844961	0.536187051622318
Merged-chr2-160366262-2	chr2	160366162	160366362	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010658, exon 1 of 1)	exon (NM_010658, exon 1 of 1)	803.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	5.70861407873605	5.92507913514851	5.80358424584193	5.31440221970345	5.39629540321641	5.85909761987816	5.47011029708177	5.49381092964864	-0.225877922349794	0.452106420198434	0.736530323246918
Merged-chr11-21448183-3	chr11	21448076	21448276	+	816.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	63004.0	NR_028259	237694.0	Mm.72926	NM_172792	ENSMUSG00000078962	4932414J04Rik	-	RIKEN cDNA 4932414J04 gene	ncRNA	2.73490512258808	2.65132606618106	2.49994094219869	2.19090553605016	3.24275443872303	2.98790537224356	3.25106779201039	3.21557882434977	3.47659570937571	2.69847542593803e-05	0.000663094056314671
Merged-chr6-120155036-4	chr6	120154946	120155146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-38777.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	8.25998311623174	8.23517845684576	8.28360704564548	8.22825401684379	8.19617663119918	8.01472546746891	7.98198588334336	7.9448559079945	-0.264729988360117	0.0912027521553236	0.330024193043715
Merged-chr2-180964225-4	chr2	180964128	180964328	+	875.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2997.0	NM_145760	228998.0	Mm.33765	NM_145760	ENSMUSG00000027575	Arfgap1	AI115377|Arf1gap	ADP-ribosylation factor GTPase activating protein 1	protein-coding	4.44902570831436	4.02075777520569	4.59904989231377	4.04180114109062	4.60370964025607	4.15734121075925	4.30536054819155	4.32214564121994	0.186862023359763	0.660617605033903	0.858992355066736
Merged-chr4-130919425-4	chr4	130919313	130919513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	6079.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	6.77471693795918	7.07477438769324	6.81712620387937	6.41913958245108	6.78810518466321	6.6196063930857	6.6550487331516	6.38145174465696	-0.224662249022241	0.347483008748568	0.655506340921964
Merged-chr4-154933630-3	chr4	154933550	154933750	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5573.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	3.85998915387542	3.92289909967579	4.24594424015288	2.93501482413459	5.11413861118106	4.56231663653549	4.73236532259895	4.68722460990206	2.29287264440047	3.66265743643723e-05	0.000860978512774654
Merged-chr8-114440062-4	chr8	114439945	114440145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 1 of 8)	CpG	393.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	5.43810964384789	5.38582482123043	5.62624378032396	5.24329159905624	5.642061392504	5.52527755271022	5.46786846631475	5.57160053811016	0.249987247978258	0.365752485134688	0.670406513516905
Merged-chr2-113398357-4	chr2	113398255	113398455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-42709.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	6.96570370885443	7.12009093257196	7.41786421759519	7.27762580347194	7.34640399107297	6.89765118768736	6.89152431598468	7.28659050796953	-0.105597237390214	0.62434238694756	0.839393596001854
Merged-chr14-13354299-3	chr14	13354200	13354400	+	829.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028052, intron 2 of 5)	intron (NM_028052, intron 2 of 5)	69520.0	NM_028052	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	3.64304282643753	3.60647968567765	3.58674545174744	3.51482933777549	3.72732426202859	3.97009105215468	3.7841860397469	3.93765119018543	0.817721968465089	0.0715757563660259	0.287267593029453
Merged-chr2-48916042-3	chr2	48915948	48916148	+	651.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149356, intron 9 of 13)	ORR1C2|LTR|ERVL-MaLR	33219.0	NM_001177313	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	3.23619595020553	3.18366648902471	3.5083769619801	3.26835547611774	3.16028090812623	3.28547795389293	3.39307692226813	3.50628326361122	0.133358157906197	0.803710075994161	0.924336354580751
Merged-chr6-116664255-4	chr6	116664157	116664357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	intron (NM_178045, intron 1 of 10)	9579.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	8.6889491842254	8.72302394780564	8.53257059935141	8.57672215008832	8.39802010386617	8.5241083577157	8.67577611219594	8.14179883315488	-0.230494919327173	0.176971143271706	0.472190613897243
Merged-chr10-84778202-4	chr10	84778136	84778336	+	946.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024918, intron 1 of 17)	intron (NM_001024918, intron 1 of 17)	22188.0	NM_001024918	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	4.31100114149079	4.09408994341252	4.39881635611191	4.54749746575743	4.40843922947837	3.8840228151444	4.67439118454159	4.59056349911932	0.159268883851403	0.712983289746986	0.885154316477147
Merged-chr10-17201296-4	chr10	17201186	17201386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105504.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	6.69457062988785	6.53056283231071	6.32278626429822	6.90580340578597	6.35926583368284	6.38179972158449	6.19285219162965	6.1575766509545	-0.542212454612697	0.0227100890889395	0.139241231411416
Merged-chr19-53140552-3	chr19	53140441	53140641	+	812.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164099)	promoter-TSS (NM_001164099)	98.0	NM_001164101	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	3.25355679692622	3.28644225617246	3.42064786876934	3.12872156973754	2.96563986267115	3.10454087791329	3.24161849224208	3.69741986121009	0.0325950677983278	0.955952909087211	0.984358366957231
Merged-chr4-152087903-4	chr4	152087767	152087967	+	899.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104381, intron 2 of 21)	intron (NR_104381, intron 2 of 21)	1004.0	NR_104381	269608.0	Mm.332102	NM_001004156	ENSMUSG00000039713	Plekhg5	BC023181|Syx	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding	4.25246629232622	4.21105667399295	3.98247673851187	4.20025403092555	4.13229766148242	3.75866174659544	3.91544963774047	4.0767942107646	-0.476742332572454	0.266955991877824	0.578582337893211
Merged-chr18-39442514-4	chr18	39442452	39442652	+	732.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	44693.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.62475389906621	5.10279308733071	4.4231375098585	4.12425637119587	4.48953383933188	4.36426704609615	4.26593037693212	4.42032520979939	-0.507485778126375	0.241864486244285	0.55238632697112
Merged-chr19-29431663-4	chr19	29431550	29431750	+	819.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 2 of 5)	MTEb|LTR|ERVL-MaLR	20731.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	3.93505540168617	4.028976189232	3.88402910270309	3.80008341769695	4.11258020588004	4.15640526601736	3.96834535018644	4.07653063502491	0.471745315030397	0.257864326258	0.569693582005417
Merged-chr5-75043306-2	chr5	75043206	75043406	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028850, intron 1 of 5)	intron (NM_028850, intron 1 of 5)	1335.0	NM_028850	74277.0	Mm.239814	NM_028850	ENSMUSG00000029229	Chic2	1700081B18Rik|4930502K01Rik|BTL	cysteine-rich hydrophobic domain 2	protein-coding	3.13208516317926	3.01680875069006	3.18819085686264	2.66803373858998	2.95159805454706	3.12491661868371	3.00253447185667	3.1307595556161	0.187908237660881	0.760718185569401	0.906319625914643
Merged-chr4-133056169-4	chr4	133056002	133056202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146155, intron 3 of 6)	intron (NM_146155, intron 3 of 6)	44596.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	5.51979667036131	4.93732412946864	4.783738441658	4.88221572756229	5.17972979788795	5.31692972812283	4.71973487547949	5.10874853459543	0.0842066245191758	0.814330354789554	0.928327532350968
Merged-chr9-36726680-4	chr9	36726543	36726743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007691)	promoter-TSS (NM_007691)	15.0	NM_007691	12649.0	Mm.16753	NM_007691	ENSMUSG00000032113	Chek1	C85740|Chk1|rad27	checkpoint kinase 1	protein-coding	6.12438077021586	5.85318421953411	5.46628757936903	6.09934004932097	6.27269978893511	6.54334486597606	6.36915284852638	6.5816547684984	0.787463920342159	0.00259478239571337	0.0285285783355702
Merged-chr19-61097915-1	chr19	61097815	61098015	+	635.0	f0_balb.idr	intron (NR_131953, intron 3 of 6)	intron (NR_131953, intron 3 of 6)	42925.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	3.34523071795861	3.52717281610433	3.09942254324741	3.26734952081764	3.03997722474785	3.56955956016994	3.21672561795201	3.39870206664904	-0.0111123046560627	0.984345413843165	0.994305370135138
Merged-chr2-164868652-4	chr2	164868564	164868764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10704.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	7.2097840265131	7.4837889082057	7.16622112562699	7.37428036496381	6.94962430655245	7.06424511286344	7.26992444169451	7.11479843179627	-0.301669668398548	0.117475307670439	0.379081282286433
Merged-chr13-81793982-4	chr13	81793872	81794072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007684, intron 4 of 4)	intron (NM_007684, intron 4 of 4)	10725.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	5.82610050155982	5.63744578570731	5.73002737678039	5.88837834813612	5.80110219754905	5.97813550480017	6.06774146358473	5.38086625710414	0.0829680864189937	0.764084845094668	0.907505974733652
Merged-chr15-59721208-4	chr15	59721116	59721316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72562.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	5.35984217127057	5.6349974333405	5.32872369204181	5.6167260059916	5.52126988555845	5.93671378533351	5.50997743149219	5.76006673085547	0.305232347391851	0.279752381528922	0.591827681649692
Merged-chr11-100321895-6	chr11	100321793	100321993	+	877.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011508, exon 4 of 4)	3' UTR (NM_011508, exon 4 of 4)	1944.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	3.90798842987881	3.61766520809704	3.99998442513352	3.53704845255207	3.93155701454527	3.98197706422993	3.63300927306406	3.85797892830355	0.27088459575085	0.56772549489955	0.808331754798167
Merged-chr9-107288922-4	chr9	107288818	107289018	+	925.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	478.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	4.10996221342716	4.17917217516657	4.16431902935852	4.12545020303199	4.80783617316763	4.5800814438492	4.7591273550867	4.84313225478209	1.38908644999384	0.00011961814986202	0.00235266656231796
Merged-chr9-105494086-3	chr9	105493979	105494179	+	895.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359822, intron 2 of 28)	intron (NM_001359822, intron 2 of 28)	1054.0	NM_175025	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	3.6604770368791	3.52911399895647	3.41824282153437	3.61822212680436	4.10215791553778	3.88764001814596	3.93918462684141	3.81534454587453	1.12011915687369	0.0151268122854745	0.105477211174352
Merged-chr3-121841045-4	chr3	121840912	121841112	+	938.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-25710.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	4.15318799376466	3.53876697502096	3.93086545298754	3.98309419395077	4.16672910946265	3.89556876363371	3.86509829385027	3.77354794872979	0.0598593311024378	0.899102416212982	0.962393017588858
Merged-chr5-65763573-4	chr5	65763471	65763671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024917)	promoter-TSS (NM_001024917)	50.0	NM_001024917	333789.0	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	4.7713135936015	4.84128255876417	4.91466689780418	4.8373987898382	4.77077213084357	4.8282566727917	4.71181071273445	4.76895761055812	-0.148709604732022	0.646726228414733	0.851401409677112
Merged-chr13-91631569-3	chr13	91631423	91631623	+	944.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 4 of 15)	intron (NM_001360776, intron 4 of 15)	-109998.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	4.08244509343946	3.78511331119712	4.00347750361095	4.33522584222	3.09507458159407	3.2073120759756	3.15924715442765	3.24153644832801	-3.48801976483618	1.05140224490311e-07	4.48398804014133e-06
Merged-chr6-15790284-3	chr6	15790160	15790360	+	894.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 4 of 4)	intron (NM_175088, intron 4 of 4)	69599.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	3.42930948666067	3.58763604010035	3.61514679020108	3.92940106230378	3.77888595587426	3.7903048248623	4.18505740386541	3.77567961500296	0.643384938184514	0.200453244710583	0.502502694416237
Merged-chr5-99828699-4	chr5	99828582	99828782	+	788.729126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-74709.0	NR_131054	330133.0	Mm.447264	NR_131054	ENSMUSG00000105218	Gm38413	A830083F22|Gm43248	predicted gene, 38413	ncRNA	3.85074779981033	3.94522048606571	4.10871984032714	4.23315088878917	4.09005912529939	4.08298338838085	4.30290458438072	4.2802642750224	0.340227829390808	0.420095281324096	0.713072018633276
Merged-chr13-8645465-4	chr13	8645388	8645588	+	954.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 3 of 10)	intron (NR_110345, intron 3 of 10)	225556.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	6.06267628596983	6.09533196621482	5.97984058121219	6.16070896162205	6.06801138434524	5.34392435836141	6.09178320684592	5.76367890611621	-0.344641653777744	0.21000274876664	0.514484230514723
Merged-chr17-63198882-4	chr17	63198761	63198961	+	872.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 7 of 8)	intron (NM_015794, intron 7 of 8)	114112.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	4.29785321429302	4.12407762722303	4.50489406364422	4.73471486484682	4.45555526179988	4.17711107992891	4.23448018017078	4.2031070350213	-0.406412653680509	0.328689296579982	0.640138323335519
Merged-chr16-24826574-4	chr16	24826456	24826656	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 8 of 12)	intron (NM_178665, intron 8 of 12)	104701.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	4.75259494579596	5.31456695634281	4.54742782154191	4.72585221510556	4.73551826667855	4.63483995706361	4.87338761609049	4.58839587021869	-0.321175515373563	0.391559977925381	0.691292697094295
Merged-chr17-4994394-4	chr17	4994291	4994491	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085355)	promoter-TSS (NM_001085355)	-683.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	4.97853233168534	5.1074590488986	5.43483311806936	5.16951592535002	5.39809545099772	5.08126452423868	4.84215692841129	5.04700502809939	-0.11230735693807	0.730944763764153	0.893382511804672
Merged-chr1-91087067-4	chr1	91086900	91087100	+	853.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 7 of 22)	intron (NM_008515, intron 7 of 22)	33556.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	3.35319554096221	3.34564607747109	3.67488272733718	3.39090258301092	3.4272344569045	3.33872542059178	3.61108822967416	3.67262151628298	0.248933409401268	0.625354749950288	0.839851429183237
Merged-chr7-127233155-4	chr7	127233048	127233248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030674)	promoter-TSS (NR_030674)	-18.0	NR_030674	100043580.0	Mm.482209	NR_030674	ENSMUSG00000000486	Gm4532	-	predicted gene 4532	ncRNA	6.25961760001613	6.225787958991	6.45607325151284	6.10161852196471	6.17120554280397	6.63089407015939	6.30287522592585	6.40115603518433	0.184517961685196	0.434145803267001	0.723505412653402
Merged-chr18-36749256-4	chr18	36749156	36749356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011879, exon 7 of 20)	exon (NM_011879, exon 7 of 20)	4600.0	NM_011879	24010.0	Mm.30234	NM_011879	ENSMUSG00000024474	Ik	MuRED	IK cytokine	protein-coding	7.66057627757723	7.63058489001594	7.35478954472274	7.61168102406044	7.63766783889717	7.65262198016771	7.54805837453364	7.5624451655837	0.0371483917919389	0.829456652429235	0.934551281935698
Merged-chr3-105865231-3	chr3	105865150	105865350	+	725.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58A|DNA|hAT-Charlie	-5608.0	NM_027025	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	3.26494271584609	3.4397153797891	3.48656385598949	3.36674836934208	3.40296773608703	3.0313826237184	3.42094816755619	3.43281725857979	-0.193238831754691	0.72059282848511	0.888339803119369
Merged-chr1-172499834-4	chr1	172499732	172499932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178598)	promoter-TSS (NM_178598)	-414.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	5.7128212696607	5.75806321325881	5.33243544326464	5.21786598661764	5.90300245394022	6.118854546426	6.01536849446344	5.94085691009298	0.794336781832541	0.0040180281401476	0.0402079607742958
Merged-chr5-25314164-3	chr5	25314080	25314280	+	799.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081383, exon 36 of 59)	exon (NM_001081383, exon 36 of 59)	67807.0	NM_001359890	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	3.41614506575117	3.08073461059657	3.57383429328813	3.61907220501661	3.14468211115247	3.47387850606049	3.50879685687086	3.41474164032127	-0.192785468457551	0.729878619731221	0.892804127302382
Merged-chr10-7598346-3	chr10	7598254	7598454	+	824.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172784, intron 2 of 6)	L3b|LINE|CR1	8554.0	NM_001359743	237253.0	Mm.206759	NM_172784	ENSMUSG00000019796	Lrp11	1700034J19Rik|6330533B21|9830160H19Rik	low density lipoprotein receptor-related protein 11	protein-coding	3.79164814503463	3.81558928680891	3.84196858313186	3.89043027384237	3.46233919712338	3.74787707669703	3.91859982800293	3.78999913852732	-0.31707758634158	0.496851787995443	0.766746453423979
Merged-chr3-5860674-4	chr3	5860582	5860782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-284434.0	NM_008994	19302.0	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	8.63316215826431	8.5694216352507	8.72519796131379	7.98257080155749	8.3826727690707	8.52129580298282	8.49738520897787	9.47883113669718	0.375772894354306	0.159929338744814	0.447715346594711
Merged-chr11-20332132-1	chr11	20332032	20332232	+	689.5	f0_balb.idr	exon (NM_018861, exon 1 of 8)	exon (NM_018861, exon 1 of 8)	581.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	3.46591336508151	3.34076032671634	3.52143375281621	3.4335638902066	3.14801665347255	3.84089606878921	3.50706320055263	3.51942433167252	0.262174054063363	0.62356533302094	0.839047181215098
Merged-chr18-56821298-3	chr18	56821192	56821392	+	593.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177115, intron 1 of 4)	intron (NM_177115, intron 1 of 4)	104256.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	3.16051119597282	2.94637567039365	2.99151000012371	3.33650535523022	2.93367376025322	2.90155111148627	2.7888445747112	2.92830161001594	-1.02180310120796	0.0999608622964052	0.346808062848305
Merged-chr3-137865208-4	chr3	137865104	137865304	+	999.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001316995, exon 2 of 5)	exon (NM_001316995, exon 2 of 5)	717.0	NM_016750	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	4.95907590339687	5.26724755408466	5.06820055335675	4.84547219603085	5.21453345038242	5.34188861499797	5.20462548163894	5.44955239643882	0.503950590472055	0.0997716255670674	0.346506198401478
Merged-chr7-4501772-4	chr7	4501680	4501880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029834)	promoter-TSS (NM_029834)	-100.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	6.76689555841384	6.62522091800834	6.50208627753788	6.64002447660692	6.86546233775185	6.81072890633829	6.77509625686113	6.70559579971332	0.223414256789784	0.262882077499335	0.574735947525663
Merged-chr10-80806067-3	chr10	80805973	80806173	+	908.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007445, exon 2 of 5)	exon (NM_007445, exon 2 of 5)	825.0	NM_007445	11705.0	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	3.84070243092754	4.34157204996679	3.66179816768429	3.42423407485025	4.42226550154577	4.02065221885162	4.16527282279884	4.26527551340408	0.962871126840912	0.0526447221200326	0.239141362019727
Merged-chr6-120820418-4	chr6	120820318	120820518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007510, intron 1 of 8)	intron (NM_007510, intron 1 of 8)	2280.0	NM_007510	11973.0	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	6.31586158080819	6.72669017987848	6.43943215047961	6.15004382272045	6.18978342562442	6.37814864192416	6.14969359296836	6.19717105043146	-0.282375054953489	0.247032204152094	0.558168726560377
Merged-chr11-85235059-4	chr11	85234926	85235126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025825)	promoter-TSS (NM_025825)	94.0	NM_025825	66884.0	Mm.271997	NM_025825	ENSMUSG00000018481	Appbp2	1300003O07Rik|AI465480|PAT1	amyloid beta precursor protein (cytoplasmic tail) binding protein 2	protein-coding	6.46983903264526	6.76100501078377	6.79335567532553	6.34297242732919	6.57994986875395	6.91365140248363	6.29031003006972	6.77492140802909	0.0865746680160507	0.721061673165685	0.888617497696901
Merged-chr7-99044581-3	chr7	99044484	99044684	+	739.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	intron (NM_178635, intron 6 of 14)	96560.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	3.39189022282381	3.2184091201368	3.09396529816902	3.29632290611769	3.17956283012379	3.3335540110082	3.37861421329832	3.49260046928989	0.323105044941599	0.54570315232996	0.795980613958413
Merged-chr9-63678311-3	chr9	63678208	63678408	+	956.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	75662.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	4.29594070091975	4.15021472119963	4.2121870290022	4.1819300206717	3.80076321474696	4.19851418420646	4.00768349211034	4.20954177767711	-0.401428103771544	0.337029092254201	0.646885264386813
Merged-chr4-12533114-4	chr4	12533020	12533220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-361105.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	6.92207623562096	6.93205908072717	6.92328709997209	7.19926671771771	7.36599692771364	7.01812238493799	6.82029017444927	6.80742969069443	0.0353253182015584	0.873547991677451	0.952619493264257
Merged-chr18-68194632-4	chr18	68194535	68194735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-33311.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	7.60517525202637	7.68517498647618	7.66596321056723	7.68821731637817	7.56105170271338	7.44671876994708	7.92861490785171	7.47307898483051	-0.0593718256173081	0.748032288374769	0.900798759417346
Merged-chr16-11460984-3	chr16	11460894	11461094	+	998.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	55346.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	4.7597100469705	4.54032730427605	4.88186710186	4.22331405841644	4.27042329974555	4.06494893536847	3.92360642758614	4.15721941472359	-1.19302119814694	0.00627481078731788	0.0560782318143422
Merged-chr14-70205949-4	chr14	70205849	70206049	+	825.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271407)	promoter-TSS (NM_001271407)	73.0	NM_001271407	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	3.94185249416532	3.74201788419344	3.65214190109802	3.84150438232241	3.75957115016488	3.52781538391378	3.58340412033368	3.80393978072405	-0.372224245993665	0.428890093938751	0.719857371117313
Merged-chr2-61138694-3	chr2	61138609	61138809	+	936.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163558.0	NR_045335	100038493.0	Mm.388076	NR_045335	ENSMUSG00000075325	Gm13582	-	predicted gene 13582	ncRNA	3.44193374505154	3.26167614649378	3.27670748529181	3.51329047561689	2.81315644689966	3.55893078134295	3.14263069979038	3.33250136541468	-0.521319900109455	0.395241161318019	0.694150374158478
Merged-chr18-11717954-3	chr18	11717845	11718045	+	895.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 8 of 18)	L2|LINE|L2	60596.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	3.57488797577629	3.52547640720425	3.57540322796139	3.64196952419105	3.15511941572883	3.33776445368311	3.70342664504605	3.28897417081931	-0.679527014543598	0.202074026397666	0.504566133212499
Merged-chr5-52674921-4	chr5	52674812	52675012	+	948.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-5211.0	NM_172490	211006.0	Mm.244719	NM_172490	ENSMUSG00000029173	Sepsecs	AA986712|D5Ertd135e|SLA|SecS	Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase	protein-coding	5.13965562731911	4.98987221938762	4.78140482065729	5.2383429479358	5.56257306128762	4.78702939680776	5.20497059114011	4.69293712215086	0.132005543520536	0.723481576866719	0.889624450832197
Merged-chr6-13871540-4	chr6	13871455	13871655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001352887)	promoter-TSS (NM_001352887)	-14.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	6.67328385389174	6.72792106442259	6.84758566257037	6.69725719628642	6.92740685872065	6.89654430364984	6.92812008240918	6.62246087784054	0.167085625856071	0.40477341403481	0.701843239813493
Merged-chr2-158596996-4	chr2	158596904	158597104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040359, intron 2 of 2)	intron (NR_040359, intron 2 of 2)	13719.0	NR_040358	100045469.0	Mm.143404	NR_040358	ENSMUSG00000086496	Gm14204	-	predicted gene 14204	ncRNA	5.15090069527826	5.0455367510022	4.6438641176938	4.86074225554058	4.96152799043207	4.47998365922815	5.31805487778149	5.14819692593611	0.15260759844391	0.676078557040251	0.867026928482569
Merged-chr10-72654814-4	chr10	72654728	72654928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293684)	promoter-TSS (NM_001293684)	-18.0	NM_025635	52696.0	Mm.62876	NM_025635	ENSMUSG00000019923	Zwint	2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1	ZW10 interactor	protein-coding	8.51291737283456	8.55828748667018	8.36355888349786	8.67847999622172	8.55638589265046	8.605896207279	8.74218180023534	8.46900733820358	0.0719581089682048	0.648594767606737	0.852327646330285
Merged-chr18-63653513-3	chr18	63653406	63653606	+	856.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38853.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	3.78651646995729	3.72312324697017	3.45542349645418	3.68528765896468	3.76710824998159	3.85602175128613	3.61773520602943	3.73521398721992	0.230808584937524	0.620279477878879	0.837110328693276
Merged-chr1-88277634-4	chr1	88277528	88277728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198652)	promoter-TSS (NM_198652)	-49.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	10.0497306746859	9.91791426903007	9.99958299121512	10.0606923067021	10.1053596562536	10.0515083785198	10.3068223916363	9.8419702578274	0.0962481471054555	0.519259406367951	0.779947567224373
Merged-chr5-123827751-3	chr5	123827652	123827852	+	973.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37764.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	3.34971430319401	3.86989281908483	3.47609860162773	3.80390837526662	3.56809552020779	3.52894996683323	3.73080563584958	3.83829317095158	0.051966205200756	0.919128466368118	0.970285021467879
Merged-chr13-35647646-4	chr13	35647545	35647745	+	975.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-12217.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	5.7956672051673	5.13692761368049	5.62078029117891	5.74968418187757	5.13401792734631	4.92045013844807	5.04090815547435	5.09799332511917	-0.993985152257032	0.00173128876223376	0.0209008485086562
Merged-chr9-113739130-4	chr9	113739014	113739214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2359.0	NM_001286599	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	6.18108111231444	6.54480484565248	6.52256788853728	6.60519503528193	6.64874923307881	6.46406712744505	6.82061691229789	6.7307251870421	0.272982109787203	0.218574067712737	0.525852888721858
Merged-chr4-150136888-4	chr4	150136790	150136990	+	973.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019741, intron 7 of 13)	intron (NM_019741, intron 7 of 13)	-12082.0	NM_001085529	435818.0	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	-	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	4.72303101307681	4.92530137820202	4.18058603489524	4.943730590194	4.79744179550097	4.818548425315	5.1952320540265	5.32294990656612	0.618068253018537	0.115659596440606	0.376329506906353
Merged-chr5-31882476-4	chr5	31882376	31882576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 6 of 11)	intron (NM_144541, intron 6 of 11)	184426.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	5.84785402702876	5.67097354943874	5.49969977507008	5.8945996993989	5.57568204763059	5.45998018486074	5.32108171759216	5.73092478758434	-0.362641117865504	0.191235941872732	0.490631496828288
Merged-chr8-121829650-4	chr8	121829567	121829767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145605)	promoter-TSS (NM_145605)	-98.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	5.7762156860807	6.00376115673735	5.8739063083118	5.9224049163299	6.09859294638286	6.07173108938258	5.79693662794723	5.69556951425655	0.0535459717390306	0.832417048027374	0.935835439369668
Merged-chr2-147012867-4	chr2	147012752	147012952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011917)	promoter-TSS (NM_011917)	-147.0	NM_001356403	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	6.77929343751388	6.86243191376607	7.13310649940955	6.71310354464587	6.87962651063756	6.91314567108099	6.81641694505864	7.03710661620611	0.0578312379642709	0.77788525336757	0.913455323755675
Merged-chr18-62122104-3	chr18	62121998	62122198	+	849.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3A|LINE|L1	57883.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	3.87187552259384	3.71709120660122	3.66776921979152	3.58335108248877	3.63711567896206	3.66937038359778	3.85556228428151	4.0460185074018	0.306522137097764	0.511777423458097	0.775640902406129
Merged-chr2-118902551-6	chr2	118902413	118902613	+	865.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045523, intron 1 of 6)	CpG	898.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	3.42754544386364	3.08614368149573	3.37020594966958	3.10646119855788	3.50371400278131	3.65469669347436	3.57182132965438	3.63421358409549	1.19835388395374	0.0198566959057394	0.127492310831195
Merged-chr3-90514411-4	chr3	90514325	90514525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011309)	promoter-TSS (NM_011309)	-10.0	NM_009113	20196.0	Mm.6523	NM_009113	ENSMUSG00000042312	S100a13	-	S100 calcium binding protein A13	protein-coding	6.47123429743174	6.071201696332	6.10737547112451	6.52584540219824	6.37282052276765	5.97687804377568	6.21554456935823	6.08168013635503	-0.214028780918095	0.395544526731168	0.694444703797431
Merged-chr7-122305625-4	chr7	122305512	122305712	+	982.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	16487.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	4.47177906628591	4.7261043833559	4.75388066590817	5.26545933638245	4.46480282241585	4.05356488335771	4.69476528011951	4.67648668312596	-0.765442241216256	0.0699100332187441	0.282991711469346
Merged-chr7-45589326-4	chr7	45589209	45589409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009737, exon 11 of 11)	exon (NM_009737, exon 11 of 11)	-14133.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	8.14216398523584	8.26598977582247	8.19216718448239	8.10384950364476	8.12482580385921	8.25093260450103	8.32553332563723	7.95831308418281	-0.00559579626784639	0.972700566776105	0.990162593092505
Merged-chr2-18892941-3	chr2	18892832	18893032	+	842.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 3 of 9)	intron (NM_008845, intron 3 of 9)	-91114.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	3.32270067944425	3.61296346115276	3.19714145333871	3.63428596978389	3.39857122368879	3.49486490317278	3.36938346999532	3.43616615508734	-0.148472532213888	0.779615892664488	0.91407006578869
Merged-chr3-84040682-4	chr3	84040604	84040804	+	887.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172681)	promoter-TSS (NM_172681)	-543.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	4.41523382423036	4.02849927182497	4.45606217128269	4.16172058087196	4.42682065444058	4.50349810720382	4.312195946966	4.28469961355482	0.28827358632624	0.461835571935942	0.743501704400988
Merged-chr11-64396508-1	chr11	64396408	64396608	+	627.0	f1_c57bl6.idr	Intergenic	Intergenic	-38824.0	NM_178870	15478.0	Mm.340214	NM_178870	ENSMUSG00000047759	Hs3st3a1	3Ost3a|Hs3st3a	heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	protein-coding	2.59594944284561	2.45975488465156	2.66926493793178	2.37544539284197	2.82553006323404	3.15553816249298	2.97207993536175	3.03826275985332	2.40445953944317	0.00029319782071571	0.00497723054632091
Merged-chr3-88754468-3	chr3	88754384	88754584	+	903.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018804, intron 2 of 3)	B3A|SINE|B2	18115.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	3.93338029616662	4.29877398727542	3.77875809537196	4.01112068879504	4.22725410002142	3.8419486280293	3.59042662911901	3.66222159985465	-0.419314111356198	0.399681307546566	0.69785889687134
Merged-chr8-109862643-4	chr8	109862507	109862707	+	746.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009677, exon 24 of 24)	3' UTR (NM_009677, exon 24 of 24)	-5996.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	3.52735625940228	3.62265472074707	3.52782566405544	3.91762851828329	3.35512549469331	3.46446922250353	3.45885050863538	3.57964333402832	-0.695457388990465	0.1736669647998	0.467759153113134
Merged-chr2-154374220-4	chr2	154374120	154374320	+	916.1375119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1501.0	NM_025876	66971.0	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding	4.41772890508803	4.73959231120348	4.6554863073334	4.26191241431922	4.54386896814296	4.54848507314321	4.39852331645255	4.17850514865329	-0.210808501147761	0.59184282495009	0.821848634889742
Merged-chr6-115823980-4	chr6	115823883	115824083	+	885.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110506, intron 1 of 8)	intron (NM_001110506, intron 1 of 8)	14429.0	NM_001110506	212516.0	Mm.333333	NM_198603	ENSMUSG00000030321	Efcab12	BB124106	EF-hand calcium binding domain 12	protein-coding	4.15800381503845	3.82222922692122	3.70796386558041	3.98687076682907	4.01439754629211	4.14851932292409	3.96057111326908	4.06876852252417	0.309590811623444	0.474313351815522	0.75165330690546
Merged-chr19-12024351-4	chr19	12024240	12024440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12400.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	6.25033215992298	5.93697539504215	5.98159157912166	6.30831075924524	6.22879065621829	6.11209665773266	6.54466295679252	6.12962334789129	0.192136010660917	0.439119211254059	0.727054346077057
Merged-chr8-41006927-4	chr8	41006804	41007004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 7 of 13)	intron (NM_001005863, intron 7 of 13)	-10564.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	6.49350032256871	6.63785079644902	5.9629240678538	6.4252385462418	5.83545396060042	6.04380341289401	6.22456455938407	5.98204421005605	-0.58803059752624	0.0219579370375774	0.136382548027725
Merged-chr10-97712843-4	chr10	97712759	97712959	+	847.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033537, intron 4 of 4)	intron (NR_033537, intron 4 of 4)	-1913.0	NR_130993	78127.0	Mm.376175	NR_130992	ENSMUSG00000112497	4930525C09Rik	-	RIKEN cDNA 4930525C09 gene	ncRNA	4.26833329248553	4.22623352643116	3.89229096993632	3.93386210123831	4.12377440525897	4.01415823289367	4.16598178757877	4.09196046638223	0.0507674993485422	0.903716861473378	0.964330447235044
Merged-chr3-65538586-3	chr3	65538487	65538687	+	941.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178892, intron 2 of 5)	intron (NM_178892, intron 2 of 5)	-9173.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	3.78778963657933	4.05872634090801	3.54960785318299	4.05874207982619	4.13610089547785	3.85132209898925	3.97307061414405	4.03366243764988	0.307678620037117	0.507263685697998	0.772710503440438
Merged-chr2-30067256-4	chr2	30067167	30067367	+	878.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204875, intron 1 of 7)	CpG	793.0	NM_001204875	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	4.19545882545212	4.17732222460743	4.05268237974381	4.14668835209964	4.10281267779375	4.22748518230859	3.93189306847191	4.57934095762786	0.212628699942099	0.612757271291807	0.832832725096038
Merged-chr2-58035860-3	chr2	58035781	58035981	+	699.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172855, intron 9 of 9)	intron (NM_172855, intron 9 of 9)	16871.0	NM_029972	77767.0	Mm.91712	NM_029972	ENSMUSG00000026830	Ermn	A330104H05Rik|AI854460|ermin|mKIAA1189	ermin, ERM-like protein	protein-coding	3.05384484020719	3.03628099229287	2.93774393428005	2.96708466097983	2.73707630036812	2.91607931222397	2.98602556318402	2.80849361504252	-0.614650979970271	0.310534039939111	0.622616866559057
Merged-chr2-91182345-7	chr2	91182191	91182391	+	895.357117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177719, intron 1 of 34)	intron (NM_001177719, intron 1 of 34)	756.0	NM_001177719	228355.0	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	3.68197418547932	3.7416032992876	4.07237923075913	3.72110287237469	3.98266682838273	3.79991905826466	4.01210448342401	3.84075358218316	0.313921793666523	0.484382707116842	0.758512965718938
Merged-chr11-88201400-3	chr11	88201299	88201499	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291270, intron 1 of 4)	intron (NM_001291270, intron 1 of 4)	-2989.0	NM_024174	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	3.28039899891187	3.05490621933145	3.52847448694271	3.80806385732346	2.798756595742	2.77671046785445	2.82197156821317	3.10396071855718	-2.49632014582981	0.000437613028325099	0.00692043051391963
Merged-chr19-55719917-3	chr19	55719827	55720027	+	666.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17723.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	3.12825323161249	3.01950571357239	3.65256916221277	3.20908132975667	3.16452172086745	2.74191365622126	2.86043849230818	3.00349914945723	-1.26729398336601	0.0583993999817305	0.254021687319701
Merged-chr15-59456734-4	chr15	59456627	59456827	+	953.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	82529.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	5.41132034287653	5.54294569593467	5.66782070387461	5.45916982513179	5.4986982037572	5.49906921512775	4.8732145793216	4.97448397720609	-0.476565753730778	0.135487687759336	0.40975009037312
Merged-chr1-134987722-4	chr1	134987609	134987809	+	898.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033409, exon 18 of 18)	exon (NM_001033409, exon 18 of 18)	25144.0	NM_001278115	67196.0	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	3.77171950760078	3.85761884741146	3.926635562024	4.14700436332731	3.84322396318125	3.64982063683674	3.95710296493413	4.10449618567002	-0.133655366600166	0.7709974371021	0.910353175958998
Merged-chr10-28540790-1	chr10	28540690	28540890	+	980.0	f0_balb.idr	intron (NM_001359356, intron 13 of 30)	intron (NM_001359356, intron 13 of 30)	-127570.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	3.59041669554768	2.95811777568169	2.95285797866215	3.41659005913188	2.50966684318306	2.61530421892382	2.66461888091013	2.88631594212507	-3.01014416588069	0.000213119805558793	0.00383847536433941
Merged-chr7-101896314-4	chr7	101896238	101896438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027532)	promoter-TSS (NM_027532)	7.0	NM_001291349	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	7.5854988555046	7.60280731107281	7.30627848844551	7.36027973453933	7.55082259117196	7.79802505037764	7.61676230029023	7.33328301013595	0.154157892602386	0.417547687684635	0.711309069758146
Merged-chr9-22230715-4	chr9	22230595	22230795	+	853.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028420, intron 1 of 4)	intron (NR_028420, intron 1 of 4)	4983.0	NM_001164624	235047.0	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	3.53616066676022	3.61455007854606	3.65131699707865	3.83353152122918	3.96863531753771	3.82321556289718	3.52402907139321	3.89772512816523	0.423183569480048	0.378806107223293	0.681349402523103
Merged-chr5-150592695-4	chr5	150592566	150592766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133898, intron 1 of 4)	intron (NM_133898, intron 1 of 4)	1859.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	7.01323821597707	7.00246191566871	7.14454648166282	7.04038684056505	6.92055059948888	6.88329408339725	7.16339555415837	7.20499693081075	-0.00272824783977617	0.988727847434984	0.995492522898152
Merged-chr4-88343518-1	chr4	88343418	88343618	+	756.0	f0_balb.idr	intron (NM_001081184, intron 26 of 43)	intron (NM_001081184, intron 26 of 43)	95408.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	3.09734959956128	3.12032487920219	3.7735793015414	3.51010731022252	2.99738560826114	3.46106894484938	3.27540772473317	3.22579807751968	-0.570562962803402	0.343727815054787	0.652327684844683
Merged-chr3-81264854-1	chr3	81264754	81264954	+	645.0	f0_balb.idr	Intergenic	L1_Rod|LINE|L1	228438.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	3.24828026262105	3.0250085327291	3.5813954843329	3.36160873954451	2.77264444099998	3.05425014861477	2.79223328679789	3.00915731936714	-1.76035328977947	0.00644648821818934	0.0572392679246611
Merged-chr13-56184496-4	chr13	56184422	56184622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5637.0	NM_001168615	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	6.77157698646599	6.68888623435568	6.22055047655223	6.78818594378879	6.41614741539196	6.49886671094798	6.36393522637553	6.66947205074	-0.228495169765711	0.325790584680197	0.637317870250968
Merged-chr10-118870402-4	chr10	118870272	118870472	+	942.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1469.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	5.04600660863667	4.86131477534361	4.25155650008621	4.38666131437942	4.41839521394241	4.82666302865391	4.55334486209417	4.39706339471054	-0.248624290415104	0.54602053830607	0.796098046161971
Merged-chr18-61400020-11	chr18	61399956	61400156	+	998.3485109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133249, intron 1 of 11)	CpG	375.0	NM_133249	170826.0	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	4.25435260490711	4.11014996098222	4.45521996351196	3.35238718992422	4.12205744422857	4.24636301622918	3.94837649223294	4.52400060108382	0.2982224223605	0.564625895704041	0.80685618611359
Merged-chr7-17051158-3	chr7	17051055	17051255	+	681.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162950, exon 5 of 15)	exon (NM_001162950, exon 5 of 15)	5524.0	NM_016868	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	3.76110419706447	3.51978466098873	3.30194602826426	3.19232559772318	3.49495283905371	3.53511303193788	3.0950624649508	3.36016679916296	-0.24410564929925	0.665365762872919	0.861367842469041
Merged-chr12-73606072-4	chr12	73605982	73606182	+	921.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	MTD|LTR|ERVL-MaLR	21286.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	4.39284207430165	4.74798278268815	4.68273389426184	4.36142758058759	4.63914745402593	4.42649549031852	4.66050990637302	4.71601032866612	0.155028320003315	0.672100870576035	0.865040336461153
Merged-chr4-117254124-4	chr4	117254027	117254227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029589, intron 2 of 3)	intron (NM_029589, intron 2 of 3)	1787.0	NM_029589	68777.0	Mm.331805	NM_026837	ENSMUSG00000048772	Tmem53	1110038M16Rik|1500001P22Rik|1700012A05Rik	transmembrane protein 53	protein-coding	5.62766995185005	5.80511410890057	6.16692930011604	5.92922487392872	5.5092482548644	5.60376866212464	5.67791744730315	5.54147359467371	-0.525342073610514	0.0497531606495744	0.230919419788475
Merged-chr11-62731452-1	chr11	62731352	62731552	+	666.0	f0_c57.idr	Intergenic	Intergenic	-2359.0	NM_133208	170740.0	Mm.339982	NM_133208	ENSMUSG00000005267	Zfp287	B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74	zinc finger protein 287	protein-coding	3.30938762346367	3.71238123898169	3.67424196521996	3.67056285090432	3.65120556681221	3.9449643987892	3.76022144679506	3.77405890930921	0.527371836511458	0.275199958998687	0.586982242558338
Merged-chr13-55600828-4	chr13	55600728	55600928	+	878.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146045, intron 1 of 5)	intron (NM_146045, intron 1 of 5)	932.0	NM_001311137	218271.0	Mm.139825	NM_146045	ENSMUSG00000021504	B4galt7	-	xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)	protein-coding	4.34286050113371	4.65567101301677	4.29803578336604	4.53277583571062	4.58871664136872	4.42561097975081	4.23281812367421	4.2483675680125	-0.188410409324704	0.62731947733821	0.841125213379356
Merged-chr5-135780628-4	chr5	135780546	135780746	+	751.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008617, intron 1 of 8)	intron (NM_008617, intron 1 of 8)	1997.0	NM_008617	17448.0	Mm.297096	NM_008617	ENSMUSG00000019179	Mdh2	MDH|Mdh-2|Mor-1|Mor1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding	4.09877170803097	3.4701932769869	3.9173564968364	4.00997689052437	3.80696375642405	3.93636135956865	3.85141944513607	4.0537457077416	0.0394513500502358	0.933329720504703	0.975967471696899
Merged-chr6-51636372-4	chr6	51636272	51636472	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91079.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	5.42196706956786	4.98227965986909	5.73399435523602	5.60821380753907	5.14360019255884	5.10347992276128	5.21974414001748	5.41911306264484	-0.444201709273889	0.167381104484083	0.458990624343051
Merged-chr2-62630653-4	chr2	62630544	62630744	+	887.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164477, intron 2 of 14)	intron (NM_001164477, intron 2 of 14)	15611.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	4.25644848658493	4.1568950740985	4.01789651241973	4.00562538304928	4.35924234660154	4.33930834477182	4.47346053496788	4.0156104540621	0.509199034187453	0.207062893502605	0.511049184276
Merged-chr10-121995572-4	chr10	121995492	121995692	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	51723.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	6.07336797483667	6.51086341776927	6.96793740748226	6.85269218779884	5.41583574731493	5.44312125837239	5.56834396722017	5.36194836037215	-1.90004615746745	4.67578636497584e-11	3.77344441805686e-09
Merged-chr8-76902176-4	chr8	76902061	76902261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083906)	promoter-TSS (NM_001083906)	-347.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	9.05954672931455	9.09233324062947	9.28718737217477	9.45366305926016	8.60750531213376	8.87088627404799	8.80977699684609	8.59412136645205	-0.637710858600128	0.000115911310449198	0.00229434125874956
Merged-chr10-117682716-4	chr10	117682611	117682811	+	940.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027468, intron 8 of 8)	B3|SINE|B2	28047.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	4.9477289258146	4.89497498381271	4.51972641191665	4.50783558584404	5.04731293445087	5.11958575249645	4.7485158483522	4.64846924906706	0.381759634983684	0.288263777594786	0.60030214819834
Merged-chr9-60688077-4	chr9	60687976	60688176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145616)	promoter-TSS (NM_145616)	58.0	NM_001146046	102747.0	Mm.269413	NM_145616	ENSMUSG00000047766	Lrrc49	AI430817|AW050057|D430025H09Rik|PGs4|p79	leucine rich repeat containing 49	protein-coding	7.56390324702051	7.77674749500083	7.00064715009215	7.44951919796382	7.65482905653386	7.7596190810635	7.38007888955988	7.16222747859826	0.0425794519687318	0.853826362004229	0.944905950148447
Merged-chr16-33191814-3	chr16	33191687	33191887	+	875.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176840, intron 1 of 12)	LTR40a|LTR|ERVL	6716.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	3.67577932507799	3.63942408803503	3.47650556680695	3.11787191412527	3.31932878649283	3.53767953560655	3.09519742869122	3.41937719967156	-0.475777649876485	0.402374938554124	0.699900924985802
Merged-chr6-48700405-4	chr6	48700289	48700489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7855.0	NM_153175	231931.0	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	5.29059794084765	5.81158220852671	5.48853232768791	4.94161844079421	6.4264392742611	6.33489221527639	6.16424771961661	5.51475880955498	1.20970589761139	0.000284493962041523	0.00485849680602318
Merged-chr8-61487873-4	chr8	61487772	61487972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145595, exon 1 of 5)	exon (NM_145595, exon 1 of 5)	138.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	5.94032033600919	5.97639536466465	6.32577754059207	5.83757328748558	5.69495793867001	6.11688593596846	5.60969564853263	6.18143826814134	-0.168781419993821	0.544350572565514	0.795184841840149
Merged-chr14-79107016-4	chr14	79106915	79107115	+	915.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027906, intron 37 of 44)	intron (NM_027906, intron 37 of 44)	92175.0	NR_152203	100043765.0	Mm.435553	NR_152203	ENSMUSG00000115111	Gm4632	-	predicted gene 4632	ncRNA	4.0516977032411	3.67107401127072	3.91379008447477	3.98991329829968	3.83104741671673	3.56702756932213	3.94449905620889	4.13418082903909	-0.0863543660825197	0.853200581072114	0.944721799522858
Merged-chr11-40402484-1	chr11	40402384	40402584	+	810.5	f0_balb.idr	Intergenic	Intergenic	290198.0	NM_134017	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	3.00226124455211	2.93187520188632	3.00270360879983	3.24388062977906	2.41102231761727	2.58000457513119	2.54778379935138	2.62701286057161	-3.07773026280155	0.000190849157339079	0.00349574168045248
Merged-chr19-47137934-3	chr19	47137829	47138029	+	902.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133746, exon 1 of 3)	5' UTR (NM_133746, exon 1 of 3)	365.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	3.41830597141322	3.65076685085287	3.52963308692226	3.4856501993611	3.2363363569977	3.41054915033963	3.61614751375797	3.52764678011952	-0.248171986751795	0.626827661870303	0.84078253767509
Merged-chr8-116504938-4	chr8	116504848	116505048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029297)	promoter-TSS (NM_029297)	-67.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	6.02877132536994	5.61438451686706	5.22252056233222	6.11429127175921	6.58790154801036	5.92179113791478	6.44268866243613	6.22330212954389	0.79948690190753	0.0104518930283691	0.0815381298754341
Merged-chr19-10739004-4	chr19	10738900	10739100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007650)	promoter-TSS (NM_007650)	-26.0	NM_007650	12507.0	Mm.779	NM_007650	ENSMUSG00000024669	Cd5	Ly-1|Ly-12|Ly-A|Lyt-1	CD5 antigen	protein-coding	5.57894903405235	5.67804404399108	5.17227681697416	5.4254872206854	5.36226752653949	5.20664862776513	5.42161672202328	5.23555482089671	-0.29107765001956	0.319847703537774	0.631656381031906
Merged-chr2-150678577-4	chr2	150678492	150678692	+	832.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10352.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	4.19375158660822	4.02089572024519	3.90115664052366	4.02844169656982	4.19908039455918	4.44679500304836	3.98978068650365	4.05365008737903	0.37082371250192	0.374474408254089	0.677830694759353
Merged-chr13-24687534-3	chr13	24687441	24687641	+	757.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080381, intron 8 of 14)	intron (NM_001080381, intron 8 of 14)	48893.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	3.74018699244583	3.59573528338165	3.47158216175298	3.72304936995906	3.67342676019877	3.58597012116766	3.62522775030615	3.68910688794257	0.00693517813641183	0.988299416578223	0.995417633686448
Merged-chr8-119437632-2	chr8	119437532	119437732	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027950, intron 1 of 5)	intron (NM_027950, intron 1 of 5)	470.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	4.59027529248107	4.73494430587051	4.22657363017086	4.0418510509255	4.75029296116238	4.94576881423067	4.48818308224998	4.62707772728953	0.652686850867892	0.105033761196776	0.356433758675821
Merged-chr11-103443962-4	chr11	103443862	103444062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16B_MM|LTR|ERVK	-31298.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	6.43781137247106	6.65166348729381	6.02121147515894	5.73888190106856	6.67413535997863	6.80234243283876	6.24417252392859	6.3466971468586	0.423295689658211	0.145352626675273	0.424784636808969
Merged-chr1-82291579-4	chr1	82291500	82291700	+	954.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010570)	promoter-TSS (NM_010570)	-161.0	NM_010570	16367.0	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	4.77324524620752	4.87032210246466	4.81127450506411	4.88411271894849	4.80860312791631	4.6098218622249	4.67443268848499	5.0417439267232	-0.089110024437154	0.790286460048993	0.918828686312538
Merged-chr3-52103859-4	chr3	52103751	52103951	+	849.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001004176, exon 1 of 5)	exon (NM_001004176, exon 1 of 5)	1155.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	3.90185890254394	3.92151228653493	4.0467204367476	3.79953598096024	3.78194833279536	4.02463177384914	3.83491728824434	4.25289843224042	0.18931684973608	0.669422251703779	0.863479905771059
Merged-chr18-54902020-1	chr18	54901920	54902120	+	574.333313	f0_balb.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	88160.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.53014106397554	3.35078348461661	3.53063629652462	3.40131264089199	3.23418261983629	3.59216930659344	3.51631311951985	3.72633967860309	0.238690299554896	0.641887987439578	0.848925046283704
Merged-chr18-38415831-6	chr18	38415754	38415954	+	991.257935	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3053.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	4.51574206218423	4.85344169223676	5.3600838379022	4.94923951125938	4.71076639573626	4.83007283796827	4.93332867613345	4.91971592648332	-0.211817147446807	0.55579180448056	0.801705036623952
Merged-chr7-126585716-4	chr7	126585617	126585817	+	829.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146311)	promoter-TSS (NM_001146311)	100.0	NM_001146311	12752.0	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	4.26908519441638	3.71617257910025	4.05929424204076	3.94841985411366	3.81986716278861	4.35775068270933	3.67757782495413	3.85944928436253	-0.157102080498284	0.742846009069027	0.898691548174051
Merged-chr1-184444356-4	chr1	184444224	184444424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113367.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	5.50692020735881	5.22524955586848	5.37038205399602	5.9354735900101	4.86391993995108	5.14429572076078	5.31432573444108	5.33726233813774	-0.693853077064117	0.0371915132411414	0.192345761897203
Merged-chr12-8519136-1	chr12	8519036	8519236	+	676.0	f0_balb.idr	Intergenic	Intergenic	-19127.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	2.83566375280469	2.98703507770212	3.15169988236539	3.18317580239971	2.78366976497782	3.20541977920236	3.02349964621635	3.25724551457489	0.097332781768177	0.874717065839796	0.952925927223413
Merged-chr12-73123794-4	chr12	73123694	73123894	+	946.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008612)	promoter-TSS (NM_008612)	77.0	NM_008612	17420.0	Mm.246750	NM_008612	ENSMUSG00000021103	Mnat1	E130115E11Rik|MAT1|P36	menage a trois 1	protein-coding	4.41014203607309	4.26350155850584	4.3682169713622	4.65479013826572	4.1926806257083	4.14756157923931	4.43160033911958	4.60162277809907	-0.218363473743107	0.585036818319244	0.817975911747343
Merged-chr11-3171468-2	chr11	3171365	3171565	+	953.333374	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 6 of 32)	B1_Mur1|SINE|Alu	21998.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	4.60650646024548	3.88701463997407	4.51741696525209	4.51097922022275	2.937494250889	3.20911708598835	3.16000415505051	3.24904739696608	-6.48217027652159	1.48073779558381e-09	9.22919750891943e-08
Merged-chr16-49792688-4	chr16	49792611	49792811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62943.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	7.10247882600004	7.50399543560148	7.52387012204056	7.28942235931461	7.32959712663511	7.37468670164687	7.27955649788722	6.81311018061811	-0.19514036073136	0.358263971829861	0.664320653179664
Merged-chr5-137645311-3	chr5	137645202	137645402	+	930.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010571, exon 1 of 2)	exon (NM_010571, exon 1 of 2)	412.0	NM_010571	16369.0	Mm.24486	NM_010571	ENSMUSG00000047182	Irs3	AA408304	insulin receptor substrate 3	protein-coding	3.77175652732495	3.97904132987646	3.60873355651609	3.41918144728378	3.9424959188241	3.99270818881153	3.70495204927087	3.60682930259146	0.356725903542461	0.468816281424412	0.747933343931938
Merged-chr10-117111716-3	chr10	117111606	117111806	+	701.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 1 of 9)	MLT1N2|LTR|ERVL-MaLR	36768.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	3.35166211650199	3.07794496189621	3.18780606827759	3.8006065361379	3.09305917142651	3.10908118968787	2.92224580173281	2.85666073281392	-1.56266014930973	0.0162471492392051	0.110899102003968
Merged-chr4-117210912-2	chr4	117210812	117211012	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	U5|snRNA|snRNA	-28288.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	3.29311231523416	3.46849741909197	3.46432381632426	3.17354958612209	3.43022964673222	3.52455720120901	3.39657313898504	3.40799500745551	0.330199326104009	0.520403674789891	0.780787600139836
Merged-chr11-69124644-4	chr11	69124569	69124769	+	812.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Gln-CAG|tRNA|tRNA	-1708.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	3.65721369104989	3.9051868178595	3.49140658350289	3.14121062421553	3.92591326713297	3.77802111236761	3.14990291200497	3.65558465250927	0.247529245045865	0.67523221245571	0.866612939963667
Merged-chr16-30416549-4	chr16	30416452	30416652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28022.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	6.72085107254985	6.82099176957699	6.46063078766035	6.86121215315605	6.85836993161636	6.77496993235744	6.91552187090604	6.57698505144875	0.0771853031229991	0.717496367360748	0.887023184585483
Merged-chr11-109365053-4	chr11	109364967	109365167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359034, intron 1 of 2)	intron (NM_001359034, intron 1 of 2)	-1413.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	5.97841487047148	6.15606006533196	6.64231447628309	6.69631846491493	6.10996816503348	5.95612656845928	6.29515155112662	6.1301792653799	-0.435240881607833	0.104992961291901	0.356374561821901
Merged-chr19-29361881-4	chr19	29361782	29361982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026362)	promoter-TSS (NM_026362)	-11.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	7.11486305714525	7.52359027282756	7.27963613213082	7.51439253749921	7.77114626834455	7.54159836051792	7.49909025838982	7.42887588484693	0.256991114242977	0.186891541708581	0.485112429701521
Merged-chr16-14311594-2	chr16	14311494	14311694	+	712.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025345, intron 2 of 4)	B2_Mm2|SINE|B2	5738.0	NM_025345	66086.0	Mm.42072	NM_025345	ENSMUSG00000022677	Fopnl	0610037P05Rik	Fgfr1op N-terminal like	protein-coding	2.9788432859399	3.00618208179285	3.16878275975444	2.98905955373951	3.2313255055691	3.50058615381384	3.1568074960516	3.16710824994433	0.908624505155386	0.101072360258887	0.348923061133733
Merged-chr14-20082343-2	chr14	20082243	20082443	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026209, intron 1 of 1)	RMER10B|LTR|ERVL	829.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	4.27707263145263	3.85057739550871	3.95281493158519	4.0361578391329	4.26092268858249	4.17888361771864	3.82817720111083	4.42871848081754	0.404478422996253	0.353640436305979	0.660451095841925
Merged-chr19-5731774-4	chr19	5731659	5731859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020491)	promoter-TSS (NM_020491)	-27.0	NM_020491	56390.0	Mm.455818	NM_020491	ENSMUSG00000079478	Sssca1	1500016H19Rik|C184L	Sjogren syndrome/scleroderma autoantigen 1	protein-coding	5.98674509823701	6.2375980945793	5.86841335447598	5.80534017461393	6.36850522749543	6.33369435378831	6.02343156231156	6.51446906027757	0.530449100785439	0.0335823892702753	0.18043183015315
Merged-chr19-12501636-4	chr19	12501516	12501716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172442, exon 1 of 9)	5' UTR (NM_172442, exon 1 of 9)	380.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	6.15630921547031	5.98127917385771	6.40850062399307	5.79484091867589	5.76691414206643	5.94567349913163	5.42874790282659	5.60363320958094	-0.628780536244951	0.0266670868661101	0.155073563913059
Merged-chr14-13981472-4	chr14	13981362	13981562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19610.0	NM_001359901	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	5.56808529974053	5.74645709639715	5.48217213430681	6.01333669203011	5.78705645082031	5.62944005080655	5.69783584275539	5.84056357314159	0.000934435844466912	0.997309012489893	0.998908860902246
Merged-chr17-74442153-6	chr17	74442062	74442262	+	992.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 4 of 8)	MTA_Mm|LTR|ERVL-MaLR	16946.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	4.25309894698521	4.44662970226775	4.62433634597192	3.52509056866153	4.55714103018451	4.56396070322916	4.60156829547877	4.20263728826926	0.50545490384357	0.291796125387768	0.60419351899511
Merged-chr19-11540352-4	chr19	11540256	11540456	+	982.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025658, intron 1 of 6)	intron (NM_025658, intron 1 of 6)	3507.0	NM_025658	66607.0	Mm.441056	NM_025658	ENSMUSG00000024678	Ms4a4d	2210417J23Rik	membrane-spanning 4-domains, subfamily A, member 4D	protein-coding	5.55539540488522	5.04548081444422	4.78530825741756	5.13249864661236	5.28286759156119	5.12896142668709	5.57486195873781	5.31489653589677	0.326666153039263	0.319627818932986	0.631524558708573
Merged-chr8-73886141-3	chr8	73886046	73886246	+	864.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-532606.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	4.97902589727315	4.78441856254863	4.73007163057477	5.59509566046451	3.49943582156549	3.74781731539813	3.52476104237654	3.68742673567306	-4.31891823231023	1.02939376873221e-12	1.09197047786274e-10
Merged-chr19-5806120-4	chr19	5806024	5806224	+	955.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3452.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	5.35468116607812	4.67368990000293	5.12767475714159	5.21556953699225	5.12090567494506	4.77416401643657	4.93702813306081	4.99263377675306	-0.286363066458242	0.401207983613241	0.698869974053897
Merged-chr1-151819411-4	chr1	151819285	151819485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001311166, exon 20 of 20)	3' UTR (NM_001311166, exon 20 of 20)	64011.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	6.95129352405131	7.08165569839058	7.04037260191551	7.33734738526103	6.98598950900368	6.6836689713831	6.91735090454233	7.07123875969503	-0.27320476639548	0.186052965083456	0.483993006368217
Merged-chr9-65666310-3	chr9	65666216	65666416	+	713.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-10232.0	NM_010952	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	3.15328140207339	3.2468835550371	3.47726789717939	3.38020132619306	2.8064864227344	3.13513639032503	3.20151849691825	3.26906763207701	-0.827498018351826	0.163950474210095	0.453849445953422
Merged-chr4-133968074-4	chr4	133967983	133968183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016957)	promoter-TSS (NM_016957)	-92.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	6.09225475774718	6.05912346939705	5.85161101474222	5.68148252822641	5.92888934461095	6.2677421110236	5.58458069407506	6.29139070210814	0.194345274958226	0.48868011667774	0.761377570765248
Merged-chr3-69208831-4	chr3	69208718	69208918	+	920.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-13601.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	4.09168600711059	4.42796728701285	4.4129384144567	4.37175196347407	4.3423455645193	4.10764188697781	4.3926917957121	4.4101072157566	-0.0382329507051278	0.921857698975846	0.970982500484595
Merged-chr3-127077587-2	chr3	127077482	127077682	+	744.333374	f0_c57.idr|f1_c57bl6.idr	exon (NM_001327939, exon 5 of 46)	exon (NM_001327939, exon 5 of 46)	-79130.0	NM_178655	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	2.9427947970813	2.70750171908829	2.77796139026258	2.30820095680452	3.88764015327548	3.84095642200038	3.73689868703296	3.61620263478156	5.87922931154248	3.28043354341522e-06	0.000102008728347205
Merged-chr1-93635818-4	chr1	93635717	93635917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021537)	promoter-TSS (NM_021537)	-90.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	8.84205274881901	8.79962591269455	9.04034192832389	8.97214375668486	8.7362221915425	8.88789676019093	9.12204983233296	8.81394665852381	-0.0269861261437373	0.865156252303214	0.949528288024881
Merged-chr19-47918696-4	chr19	47918589	47918789	+	983.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001738, intron 1 of 1)	intron (NM_001001738, intron 1 of 1)	610.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	5.59265042423125	5.40751544672947	5.74891598371342	5.811951095167	5.75190866401528	5.28125782119136	6.19632087548603	5.92582785828068	0.287976111373807	0.343634159582591	0.652264111594778
Merged-chr1-166788138-4	chr1	166788053	166788253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106308.0	NM_001347135	240894.0	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding	6.24217243431454	6.13832017544788	6.74276839122922	6.67008687788536	6.20875593871991	6.42003181966339	6.32420489129317	6.29678334725217	-0.256798291154785	0.298282281659706	0.610414424882302
Merged-chr8-13493604-3	chr8	13493445	13493645	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019521, intron 2 of 14)	intron (NM_019521, intron 2 of 14)	990.0	NM_019521	14456.0	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	3.18200780054373	3.27356395600794	3.40423968204556	3.34259478630401	3.11020997153493	3.02257640443801	3.38998501622446	3.23988009365102	-0.407314028731892	0.46131746846936	0.743096330342324
Merged-chr7-19024860-4	chr7	19024735	19024935	+	965.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360713, intron 1 of 22)	intron (NM_001360713, intron 1 of 22)	458.0	NM_026605	68188.0	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	4.15107968487818	4.37547994571057	3.99042457843073	4.07309440824479	4.41507075995931	4.51323123011667	4.4043939317189	4.77655330378076	0.89827911490997	0.0216284945066028	0.134865931711387
Merged-chr12-40431251-3	chr12	40431148	40431348	+	920.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172575, intron 1 of 12)	intron (NM_172575, intron 1 of 12)	14542.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	3.84442731564481	4.24450977138512	4.1235474157413	4.35310359684052	4.6223218223407	4.29925976594581	4.24753359559773	4.58066562908423	0.672750138387998	0.10834256062105	0.363296525655024
Merged-chr6-72737773-2	chr6	72737673	72737873	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	51272.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	3.59522483296704	3.25313555478279	3.65016778173102	3.71944495135916	3.70984411470226	4.01417731616743	3.68700990142672	3.59374725776359	0.561098598675125	0.265991794119768	0.577702069192657
Merged-chr7-99828368-4	chr7	99828278	99828478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016720)	promoter-TSS (NM_016720)	39.0	NM_016720	50877.0	Mm.103703	NM_016720	ENSMUSG00000035239	Neu3	-	neuraminidase 3	protein-coding	6.00326745644946	6.15172468030334	5.78212660206449	5.43693324774643	5.95825720943034	5.66100831275776	5.88980445545506	5.47829944615836	-0.147838393454265	0.621251414089146	0.837757076551181
Merged-chr12-85284425-4	chr12	85284327	85284527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3992.0	NM_025421	66204.0	Mm.311985	NM_025421	ENSMUSG00000008822	Acyp1	1110039O14Rik|AI325944	acylphosphatase 1, erythrocyte (common) type	protein-coding	6.11781625959878	6.33871470917599	6.59614987957978	6.54964557635983	6.17151984538565	6.31719618474576	6.43953380105772	6.02560866530245	-0.265754034095255	0.270126373918064	0.581968488248999
Merged-chr6-114838111-4	chr6	114838021	114838221	+	952.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	MTD|LTR|ERVL-MaLR	83700.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	4.59146322712941	4.59914481408249	4.37085304628262	4.31531935683873	4.56454096439867	4.8434572980803	4.88968391380287	4.81235969861336	0.677467242354915	0.0566336973878308	0.249267976637354
Merged-chr13-92637015-4	chr13	92636936	92637136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172588, intron 1 of 11)	intron (NM_172588, intron 1 of 11)	25898.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	6.5154437612501	6.34263113819249	6.77107615187838	6.97234111299835	6.43863595196104	6.26550415248425	6.69545876387669	6.371725011399	-0.336892440177831	0.170414100234632	0.463560227942354
Merged-chr17-26640441-4	chr17	26640360	26640560	+	825.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 8 of 9)	intron (NM_026170, intron 8 of 9)	-35936.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	4.62120233388679	4.16274674605357	4.84840473216886	4.45616949050407	3.77354863039211	4.2841363708814	4.32563872096095	4.29786084998512	-0.860519863756889	0.0505084405452841	0.233147878701218
Merged-chr3-133525659-5	chr3	133525515	133525715	+	964.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040400, intron 1 of 10)	B1_Mus1|SINE|Alu	18775.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	4.72915419963067	4.32754787691941	4.76897876148241	4.37357349339718	5.01870366627562	4.94454688037187	4.85566027878575	5.38921853984174	1.06450915928236	0.00279222806782021	0.0302094545735484
Merged-chr1-157047691-4	chr1	157047633	157047833	+	930.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60917.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	4.1615640062861	4.4298907963505	4.20678351716079	3.81791650429488	4.12021711731465	3.85828358288831	4.14375363306341	4.24713731363997	-0.155052309045934	0.726963637985581	0.89133085313418
Merged-chr4-33245099-4	chr4	33245018	33245218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033225)	TTS (NM_001033225)	3669.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	5.40968161522293	5.53220332239867	6.21842915854447	5.59395387758192	6.10923964640254	5.65558867754991	6.28680268636944	6.04529751094117	0.521477549889973	0.0848324247919103	0.316953816821342
Merged-chr10-40244721-4	chr10	40244621	40244821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023323, intron 1 of 9)	intron (NM_023323, intron 1 of 9)	2258.0	NM_001042556	67239.0	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	6.07611175658917	5.77031599444601	5.68881843928078	6.16418621623284	6.02574877722895	5.75535995387029	5.57792121125514	5.97059436062202	-0.161510459974823	0.555516338778942	0.801562892315961
Merged-chr15-99456576-4	chr15	99456484	99456684	+	877.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001884, intron 1 of 12)	intron (NM_001001884, intron 1 of 12)	1164.0	NM_001001884	380969.0	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	4.43397459271705	4.24956244954527	4.47577495845171	4.56323276644425	4.3555856892972	4.38276852548346	4.41457636014804	4.512660234201	-0.0680199401770286	0.855022025285149	0.945424485789793
Merged-chr4-145240340-4	chr4	145240229	145240429	+	922.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	6541.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	4.67486378268154	4.30062246389303	4.18310761718133	4.47014603202886	4.42013139636102	4.25803208807726	4.54767819232762	4.22968607214968	-0.113790765017572	0.771481585073158	0.910379161490028
Merged-chr17-28952466-4	chr17	28952352	28952552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356299)	promoter-TSS (NM_001356299)	16.0	NM_001356299	66989.0	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	6.32404520015024	6.43212212988976	5.84575758902712	6.03891370350811	6.36914688500206	6.62106762439866	6.1187645491975	6.56676228950688	0.380296508013416	0.135939245073011	0.410349387415563
Merged-chr3-8747351-4	chr3	8747257	8747457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-80319.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	6.79926770529143	6.7967628748066	6.95739804289117	6.93497252880325	6.46144077045009	6.62715929518249	6.83341912659523	6.75314134859341	-0.296133459625547	0.150903723750806	0.433934317167963
Merged-chr19-11469452-4	chr19	11469347	11469547	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028595)	promoter-TSS (NM_028595)	79.0	NM_028595	73656.0	Mm.440719	NM_028595	ENSMUSG00000079419	Ms4a6c	2200009H22Rik|2210417N07Rik	membrane-spanning 4-domains, subfamily A, member 6C	protein-coding	4.74456533993901	4.60564457818088	5.07865190625384	4.35670462348643	4.94954229751855	4.6723151452616	4.79626292692137	4.85162940839115	0.25525254060036	0.490376198291625	0.76218992069439
Merged-chr17-87602376-4	chr17	87602249	87602449	+	962.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33630.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	5.36496870796894	5.14362995880936	5.04487902173406	5.09495711330214	5.57389384777792	4.9443762837318	5.49742055893917	5.47065026573905	0.438373336302332	0.1575660919251	0.444191724707381
Merged-chr5-134458871-4	chr5	134458778	134458978	+	964.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2162.0	NM_001081464	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	4.71665695919233	5.05648504513659	4.94455650814351	5.39585581329474	4.8270771465292	4.85272141987365	4.77523082009287	4.83281120765755	-0.505387270480044	0.146939002291494	0.42761123563813
Merged-chr3-152555287-4	chr3	152555188	152555388	+	974.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355635, intron 6 of 8)	intron (NM_001355635, intron 6 of 8)	-111625.0	NR_040386	99542.0	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA	5.05258521851365	5.42945053930253	6.21143783531609	6.31632707135422	4.97770875863267	5.31405970383067	5.46303158335962	5.5699598104364	-0.873685470191221	0.0227993106712404	0.139482718089567
Merged-chr18-80255214-4	chr18	80255112	80255312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164420)	promoter-TSS (NM_001164420)	-33.0	NM_001164420	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	6.50423294262326	6.52956901731017	6.42274314233137	6.44300382376863	6.3773499181963	6.10651210713374	6.40677596020906	6.15309368516032	-0.29582093098135	0.179787478674081	0.476046906649149
Merged-chr2-172346210-4	chr2	172346105	172346305	+	883.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025912, intron 1 of 2)	intron (NM_025912, intron 1 of 2)	628.0	NM_025912	67017.0	Mm.30013	NM_025912	ENSMUSG00000027495	Fam210b	2010011I20Rik|AI430961|AV108736	family with sequence similarity 210, member B	protein-coding	4.40392900830909	4.26215858858778	4.63942939823954	4.52656655093737	4.45164750458748	4.44312930312264	4.34163437368013	4.48521437005788	-0.0827152295775238	0.823674726517809	0.93238459540094
Merged-chr9-90107141-4	chr9	90107038	90107238	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 3 of 12)	intron (NM_001039147, intron 3 of 12)	7682.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	4.87418142181125	4.42091412799047	4.03006328262812	4.18228700650414	4.8453155349319	4.94476839693648	4.74971385280504	4.8046460562389	0.932959944303182	0.0181329571543389	0.119863090387137
Merged-chr18-62045135-4	chr18	62044987	62045187	+	788.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	92012.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	3.95618351218004	4.03836218737242	4.26049010449516	3.97879700097985	3.59645468643416	3.86476731875659	3.78575986770219	4.13652845641218	-0.574237041890031	0.209895227067878	0.514467368025637
Merged-chr12-25098915-4	chr12	25098822	25099022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2830.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	8.16149192683002	8.42713792531921	8.03754126926493	8.56028388828666	8.34072179866154	8.51597215261162	8.42831162063863	8.25977841997119	0.0826001042941167	0.647566162508069	0.851667779256884
Merged-chr11-68706678-4	chr11	68706586	68706786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175260, intron 2 of 40)	Charlie1a|DNA|hAT-Charlie	14771.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	7.131706523214	7.02894063050952	6.97321253217298	6.74956564263479	6.75473938512692	6.58920722966325	6.58864067734696	6.76938586089041	-0.403052514791351	0.053251524731679	0.240705548922092
Merged-chr9-13299386-4	chr9	13299283	13299483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52427.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	5.80342176621195	5.5096657824064	5.47083785990191	5.73612003401376	5.62517756044914	5.55682057580831	5.77486950197399	5.52437107319092	-0.0328446754037379	0.902563706202246	0.963848753135321
Merged-chr3-142521507-4	chr3	142521416	142521616	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153564, exon 11 of 11)	3' UTR (NM_153564, exon 11 of 11)	-8820.0	NM_001083312	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	4.2826242638621	5.21314215902043	4.68406593196675	4.46567359579642	4.67392221569021	4.36014056275733	4.69924972489601	4.79086833012675	-0.143206286919378	0.728902502761948	0.89229600557387
Merged-chr18-11657364-4	chr18	11657261	11657461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045526)	promoter-TSS (NR_045526)	12.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	7.06627753501183	7.36770407058598	6.89289192110929	7.14021278930201	7.51715546328601	7.65718288101389	7.30079128081841	7.30154027328878	0.43233607320228	0.0309409176468188	0.170830249548783
Merged-chr3-142263900-3	chr3	142263793	142263993	+	597.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190854, intron 8 of 12)	MTB_Mm|LTR|ERVL-MaLR	-94468.0	NM_001277216	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	2.67706751789015	2.61769677929084	3.34001728841266	2.52870270309717	3.15167387489652	3.40620869431901	3.47118684238511	3.38917106134	1.97861104509155	0.0946187427833474	0.336545254997827
Merged-chr10-61696391-2	chr10	61696291	61696491	+	719.666687	f1_balb.idr|f1_c57bl6.idr	exon (NM_001272090, exon 1 of 4)	exon (NM_001272090, exon 1 of 4)	805.0	NR_073587	71767.0	Mm.71514	NM_027912	ENSMUSG00000020087	Tysnd1	1300019N10Rik	trypsin domain containing 1	protein-coding	3.46066857768132	3.28561380807283	3.51608683907859	3.32699479699761	3.47774660894102	3.45878929087155	3.26987570583305	3.92331984494596	0.527157910846609	0.318018981663662	0.629922724247608
Merged-chr14-14294673-4	chr14	14294573	14294773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33440.0	NM_147027	18330.0	Mm.484338	NM_147027	ENSMUSG00000072707	Olfr31	MOR274-1|MTPCR53	olfactory receptor 31	protein-coding	5.98506287698963	5.78511502971976	6.28379692016269	6.20031385124732	5.92235819934906	5.94510497773193	6.17923183312075	6.31409973928406	0.0207347268722496	0.935654016466333	0.976639892179174
Merged-chr12-84201435-4	chr12	84201321	84201521	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	-7406.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	5.24015297710016	5.3424016358231	5.21030158007288	5.18715892323749	5.17928922692336	5.41366312905214	4.98444148977529	4.96808724144717	-0.17773082264484	0.558399449643702	0.803138364227774
Merged-chr4-126019193-4	chr4	126019100	126019300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5459.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	7.5198320115515	7.65133454385185	7.30120160584383	7.37501146894812	7.6716935036029	7.56308128031867	7.53770442618338	7.71070082849345	0.209633821111237	0.23995008392689	0.550410462246196
Merged-chr14-70618279-4	chr14	70618151	70618351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001252663, exon 2 of 14)	exon (NM_001252663, exon 2 of 14)	318.0	NM_001252666	13829.0	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	5.33065370083341	5.27940386518415	5.56385702399945	5.32076088594001	4.96463706916544	5.0746251693916	4.98632827158991	5.04292539314694	-0.67184713343498	0.0244062801291092	0.146025117726298
Merged-chr12-51966737-6	chr12	51966684	51966884	+	849.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177171, intron 1 of 35)	intron (NM_177171, intron 1 of 35)	4537.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	4.17223901993867	4.26848706475708	4.57124559239888	4.1909093160262	4.26153539866593	4.20060470028097	4.24410094889977	3.79420325362431	-0.401196182341972	0.346165244042432	0.654406031703397
Merged-chr1-37903298-4	chr1	37903180	37903380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12803.0	NM_027098	107734.0	Mm.26614	NM_027098	ENSMUSG00000026087	Mrpl30	2310001L22Rik|L30mt|MRP-L28|MRP-L30|Rpml28	mitochondrial ribosomal protein L30	protein-coding	4.69823916601692	4.81591924220835	4.62295182545637	4.40042092714619	4.6722188898916	4.58647767001819	4.52136514812143	4.53916338577322	-0.0980871889329084	0.785997188989132	0.91674986342205
Merged-chr6-91677563-4	chr6	91677466	91677666	+	809.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6501.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	4.04063592130892	4.04531318928962	3.99145350825591	3.79720949244785	4.36494185262221	4.34970977161953	3.97482285767796	4.08667979853071	0.650278318310608	0.121487828500043	0.386028909847947
Merged-chr8-23208905-2	chr8	23208818	23209018	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_018743)	promoter-TSS (NM_018743)	-465.0	NM_018743	102247.0	Mm.200898	NM_018743	ENSMUSG00000031545	Gpat4	AU041707|AW545732|Agpat6|Tsarg7	glycerol-3-phosphate acyltransferase 4	protein-coding	5.05157655843101	5.07047161957958	5.20686702046887	4.99880658669771	4.72481610976257	4.89435351191471	4.99477998279855	5.08138834449464	-0.305114758233115	0.337043045210657	0.646885264386813
Merged-chr4-55960237-4	chr4	55960137	55960337	+	890.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-427762.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.86466396725211	5.33527968611833	4.93565264681274	5.3670874177251	4.46679157946388	4.47225354999897	4.80573236975532	4.48906163503801	-1.22938885393583	0.000655846415683681	0.00957982598439334
Merged-chr12-113216097-3	chr12	113215983	113216183	+	717.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30180.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	4.30159910411047	4.48003859342585	4.34381884773485	4.56287786842134	3.87281816105131	4.09021048940458	4.15070272047966	3.85039056975617	-1.14267145896682	0.0059420199332538	0.0538854963840401
Merged-chr1-167000782-6	chr1	167000649	167000849	+	836.027771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175461)	promoter-TSS (NM_175461)	-668.0	NM_175461	226610.0	Mm.389217	NM_175461	ENSMUSG00000060568	Fam78b	C030014K22Rik|C030020L09Rik	family with sequence similarity 78, member B	protein-coding	3.67071251204236	3.73183147244052	4.06802512512057	3.59405225132138	3.8040012165661	3.7308619228739	4.04925403818357	4.10725002264004	0.463991860127447	0.319351220080059	0.631193707043275
Merged-chr4-133156587-4	chr4	133156456	133156656	+	800.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	L2|LINE|L2	25923.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	3.55940020659149	3.6816619377261	3.92636282729958	3.89517222706551	3.51920713797694	3.54931616717965	4.03705243464699	3.96858307081215	0.0218460524869326	0.964946053525567	0.987600044464378
Merged-chr2-112448276-4	chr2	112448173	112448373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-6752.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	6.35946201095423	5.97520518773512	6.2172586735289	6.13579626690322	6.09713783763011	6.09615360171136	6.40944542749613	5.865631410611	-0.0644143204377316	0.795160118330387	0.920768225652583
Merged-chr11-80383279-4	chr11	80383221	80383421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011751)	promoter-TSS (NM_011751)	42.0	NM_001130171	22680.0	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	6.13417001514174	6.25682051337812	5.84553217519629	5.91582187587228	6.26930642261434	6.2901546941682	6.14282825718101	5.79036993296771	0.152337443921884	0.551382883916617	0.79892812604468
Merged-chr13-113351774-2	chr13	113351674	113351874	+	668.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142115.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	2.57511129931119	2.30124184913657	2.36499558357573	2.05356143872857	2.46522090534362	2.87014521465217	2.62797059209433	2.57405694802648	1.73634663136854	0.0256116355534761	0.150994021988756
Merged-chr4-101255229-4	chr4	101255132	101255332	+	859.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 1 of 24)	B4A|SINE|B4	10050.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	4.16489846856021	3.8633866877339	4.46735567752838	4.73760303033904	4.532210548622	4.18990191080858	3.88261582355637	4.38533094294019	-0.204303512384989	0.669605269439416	0.86357079102718
Merged-chr11-119943899-3	chr11	119943762	119943962	+	959.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	770.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	4.31526042271973	4.09576713780064	4.47454447882925	3.97063083595681	4.37384114861993	4.35557326920548	4.20976058905176	4.03125334624157	0.100418543456918	0.810332555078305	0.92679579587174
Merged-chr1-134196562-4	chr1	134196462	134196662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357515, intron 3 of 10)	intron (NM_001357515, intron 3 of 10)	3114.0	NM_016749	53311.0	Mm.379067	NM_016749	ENSMUSG00000042451	Mybph	AI385643|MyBP-H	myosin binding protein H	protein-coding	8.12901897391304	8.06615529395564	8.03397211971683	8.30486815003898	8.08184814550351	8.09983800157479	8.15196350136431	7.81029974547176	-0.129739429936359	0.445289278176268	0.731366858142202
Merged-chr9-57820668-4	chr9	57820570	57820770	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019689, intron 1 of 7)	intron (NM_019689, intron 1 of 7)	13564.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	4.16935674878234	4.39370798655197	4.56888711562561	4.19698541625222	4.09575770395509	4.14557931349213	3.83914887760236	4.25781924745785	-0.611188614427053	0.146336135126059	0.426520607761261
Merged-chr10-9718228-4	chr10	9718125	9718325	+	878.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33503.0	NR_038036	620417.0	Mm.378085	NR_038036	ENSMUSG00000111901	Gm6150	-	predicted gene 6150	ncRNA	4.45534228189636	4.8592959851119	4.66835017988177	4.92956438396992	4.397192076837	4.80198153834299	4.64658905311017	4.74119474040452	-0.234165629786169	0.522524389534267	0.781971587334536
Merged-chr15-25606732-4	chr15	25606635	25606835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15815.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	6.28070228742086	6.28531357016653	6.39035984401598	6.45210470399256	6.24610332062927	6.31890131199264	6.50394328434922	6.11646509724269	-0.0887238832795554	0.693415837712508	0.875305395019895
Merged-chr18-38993579-3	chr18	38993460	38993660	+	962.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175164, exon 1 of 23)	exon (NM_175164, exon 1 of 23)	415.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	4.04668964221864	4.01266200074739	4.26939185017512	4.11416656976368	4.05350819675674	3.89944844544052	3.98127279944953	4.34542244174148	-0.081712693776776	0.846292586437714	0.941927981530162
Merged-chr8-4193466-4	chr8	4193368	4193568	+	946.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346730, intron 10 of 19)	intron (NM_001346730, intron 10 of 19)	23844.0	NM_207203	73072.0	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	4.51626290860469	4.5685769092749	4.88989139986101	4.8475682849141	5.05897526738807	5.16610358832691	5.40803609300325	4.65037067454737	0.74036452806038	0.0394497703499867	0.200042402489257
Merged-chr9-83555181-4	chr9	83555081	83555281	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	6843.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	4.41170288245781	4.60034340744106	4.35939632980202	4.63468239400719	5.53505238219599	4.99183719824496	5.38935585339418	5.17744761688702	1.52762040061502	1.10993954451212e-05	0.000302582868015427
Merged-chr1-134518780-4	chr1	134518679	134518879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24119.0	NM_145510	98710.0	Mm.198119	NM_145510	ENSMUSG00000042229	Rabif	AI842864|AW549708|E130318E12Rik|MSS4|RASGFR3	RAB interacting factor	protein-coding	6.08822855330836	6.26856404978243	6.33152397302994	6.32048169285234	6.11586358627385	6.43240707301671	6.77867346334095	6.54545676391633	0.329295935862206	0.178187171224814	0.473907434166985
Merged-chr6-116676649-4	chr6	116676555	116676755	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2819.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	5.95636453407547	6.01465326480729	5.50948967246448	4.80457332479782	6.37071305385936	6.21281176237634	5.53935380881151	5.38080272376671	0.473859161903114	0.227783747423351	0.536465946363434
Merged-chr3-138443097-4	chr3	138442995	138443195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007410)	promoter-TSS (NM_007410)	2.0	NM_007410	11532.0	Mm.3874	NM_007410	ENSMUSG00000028138	Adh5	Adh-5|Adh3|GSNOR	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding	8.14139477263095	8.2037311144209	7.89529536854474	8.21724094186949	8.36394309259752	8.20967707664844	8.60031813321978	7.92741367248073	0.224494220575562	0.24479920541274	0.555884768862855
Merged-chr11-3178443-1	chr11	3178343	3178543	+	725.0	f0_balb.idr	intron (NM_030207, intron 5 of 32)	B2_Mm2|SINE|B2	15020.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	3.11789087233942	2.44449421633445	2.88664261291656	2.45816731008721	2.05018829045726	2.17764179131992	2.15397470500886	2.15785893506045	-5.73662810147634	2.01387108937331e-06	6.58453515252655e-05
Merged-chr19-43898692-4	chr19	43898604	43898804	+	922.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 4 of 15)	intron (NM_028029, intron 4 of 15)	-18936.0	NM_001306088	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	5.46410650799184	5.11444120858552	5.23158115445936	5.10262220928402	4.65319540966678	4.65979157645792	4.88416795070445	4.8285354219724	-0.932831958368972	0.00452787581504897	0.0441311341420472
Merged-chr9-45294518-5	chr9	45294419	45294619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24581.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	4.89047920468023	4.80790847566269	5.19314797547016	4.94141030832623	5.39003695749294	5.33467624722289	4.97583793028392	4.72740715924172	0.345636009935823	0.311306573227226	0.62332247252358
Merged-chr6-116628834-4	chr6	116628685	116628885	+	832.762512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302440)	promoter-TSS (NM_001302440)	-84.0	NM_001302440	67255.0	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	3.24370198133942	3.39627547382124	3.77046603074806	3.03915355152292	3.50141044549232	3.59832444556531	3.35500546834655	3.42367068560898	0.30788561723121	0.582482468602674	0.816585973503037
Merged-chr15-25835093-4	chr15	25834989	25835189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8209.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	6.35308754408441	6.08403247425113	6.3371498686513	6.32282061116567	6.07191599209841	5.60415138034249	5.90536137790374	6.33260388615653	-0.412592960732746	0.111471380060866	0.368917290310693
Merged-chr11-111290749-4	chr11	111290633	111290833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	224569.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	6.99683608290696	7.11611483844251	6.60274248658678	6.77537748530761	6.79197516974136	7.14847125930467	6.6641139225257	6.82448754665891	-0.0281527621706327	0.89980996532845	0.962817358760599
Merged-chr17-35978869-2	chr17	35978769	35978969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001282012, exon 1 of 4)	5' UTR (NM_001282012, exon 1 of 4)	154.0	NM_001282012	75210.0	Mm.40036	NM_145487	ENSMUSG00000038500	Prr3	4930540G07Rik|Cat56	proline-rich polypeptide 3	protein-coding	3.17819827793107	3.17695846007533	3.29362714922964	3.28570637680867	3.32167913959702	3.09194237391188	3.28090535781414	3.29184773212674	0.0587338544482379	0.91277071433627	0.967349681755451
Merged-chr11-69685910-4	chr11	69685790	69685990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023517)	promoter-TSS (NM_023517)	-336.0	NM_023517	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	5.56121140067425	5.70316022012003	5.56217579658587	5.46848513981746	5.74837262543212	5.98938633431525	5.66650504653351	5.94236099040593	0.445846069203814	0.0860015206997397	0.319577250946843
Merged-chr6-130337630-3	chr6	130337505	130337705	+	990.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289605)	promoter-TSS (NM_001289605)	21.0	NM_001289605	16634.0	Mm.425338	NM_010648	ENSMUSG00000067591	Klra3	5E6|Ly49c|NK-2.1|Nk-2|Nk2|Nk2.1	killer cell lectin-like receptor, subfamily A, member 3	protein-coding	3.95313782598402	4.22001331122081	3.99581464864499	4.16565731556081	3.12865131203591	3.11191037134743	3.0695052013536	3.15522088318962	-4.02162817103999	3.88622356585127e-08	1.83422110491696e-06
Merged-chr1-20497752-3	chr1	20497653	20497853	+	869.544434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153179, intron 35 of 66)	(CTG)n|Simple_repeat|Simple_repeat	120304.0	NM_153179	241035.0	Mm.249253	NM_153179	ENSMUSG00000043760	Pkhd1	AI118496|AI182499|FPC|Tigm1	polycystic kidney and hepatic disease 1	protein-coding	4.23965984843521	4.02228601582527	4.28060111115165	4.48651145155318	3.81110507098068	3.80602188700962	3.84675479695505	3.85981175890361	-1.22488628081203	0.00543309289920237	0.0505071913646342
Merged-chr6-72345186-4	chr6	72345089	72345289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138592)	promoter-TSS (NM_138592)	-14.0	NM_138592	28035.0	Mm.281900	NM_138592	ENSMUSG00000056305	Usp39	AA408960|AI894154|CGI-21|D6Wsu157e|SAD1	ubiquitin specific peptidase 39	protein-coding	6.32651382512707	6.42181339481814	5.92608096171436	6.26655543370239	6.40243489766681	6.5208344851661	6.38220039580608	6.12776907214234	0.17040141874245	0.473047010070518	0.751015147651546
Merged-chr9-25253070-4	chr9	25252989	25253189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001359738, exon 1 of 13)	5' UTR (NM_001359738, exon 1 of 13)	197.0	NM_001359738	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	4.95993987288156	5.28072358470468	5.54105525362263	4.98820603657056	5.34634646626823	5.21296973792692	5.27240473934678	5.38106954744397	0.194213175878803	0.533334579593587	0.788661515340021
Merged-chr9-54586405-4	chr9	54586309	54586509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029573)	promoter-TSS (NM_029573)	-102.0	NM_029573	67834.0	Mm.279195	NM_029573	ENSMUSG00000032279	Idh3a	1110003P10Rik|1500012E04Rik|AA407078|AI316514	isocitrate dehydrogenase 3 (NAD+) alpha	protein-coding	8.40680605112453	8.61892463345217	8.3871120348997	8.47224426122258	8.33728576277075	8.31929673175011	8.61827680128806	8.18687722587584	-0.127170285978471	0.444963352326947	0.73115209509395
Merged-chr5-143050467-4	chr5	143050382	143050582	+	978.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	PB1D11|SINE|Alu	62538.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	4.89750891465302	4.74742282913124	4.78264561619368	4.64510240186775	5.33978641579701	5.10918605461108	5.30433950614156	4.96667586334192	0.855957583344685	0.00680511092926033	0.0596675278188988
Merged-chr2-3284037-4	chr2	3283939	3284139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290370)	promoter-TSS (NM_001290370)	-173.0	NM_008708	18108.0	Mm.65021	NM_008708	ENSMUSG00000026643	Nmt2	A930001K02Rik|AI605445|AU044698|hNMT-2	N-myristoyltransferase 2	protein-coding	9.36847241929689	9.36448998389306	9.4880693458322	9.22640599285374	9.60198766478587	9.84551168977141	9.74444397894763	9.54974453379259	0.401297391771389	0.00617456456849223	0.0554014031792145
Merged-chr6-26764948-4	chr6	26764846	26765046	+	929.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	833520.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	4.96087192884085	4.8902060355329	5.12469187880007	5.56017252506616	4.84167654076197	4.73798587177501	4.90275900551547	4.64520185378959	-0.779367575505635	0.0286820019075036	0.162664478175731
Merged-chr7-80057567-4	chr7	80057463	80057663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	17694.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	6.28287873469612	6.15554194922133	5.86433200785615	6.16212945251556	5.53356359733281	5.41577262302305	5.31247098136082	5.40153140597605	-1.15988355499404	1.24395093988155e-05	0.00033577240784918
Merged-chr6-35178034-1	chr6	35177934	35178134	+	959.0	f0_c57.idr	intron (NM_027513, intron 1 of 42)	CpG	418.0	NM_027513	70699.0	Mm.261208	NM_027513	ENSMUSG00000038759	Nup205	3830404O05Rik|AV248391|mKIAA0225	nucleoporin 205	protein-coding	4.32809487462735	4.31107805390227	4.61918878814624	4.22014996448105	4.54409308010249	4.54873865134605	4.55994755572393	4.6161168772061	0.464468842104226	0.20557684553126	0.509248774555215
Merged-chr6-70837497-3	chr6	70837403	70837603	+	693.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7012.0	NM_010121	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	3.47326652618801	3.29895777354928	3.58071919324019	3.39378793395688	3.69587029664312	3.3423175928444	3.21919583344821	3.85344201307869	0.395341554625337	0.461841538912123	0.743501704400988
Merged-chr11-54811431-4	chr11	54811344	54811544	+	991.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8475.0	NR_040284	432562.0	Mm.406948	NR_040284	ENSMUSG00000086789	Lyrm7os	Gm12228	LYR motif containing 7, opposite strand	ncRNA	5.16964254591131	6.00799638225451	5.06475163622642	4.83860388350452	5.27498208018191	5.2796706962259	5.56938590205761	5.29560469111388	0.0114857952202285	0.975713278082785	0.991347073148764
Merged-chr2-153015419-4	chr2	153015292	153015492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178939)	promoter-TSS (NM_178939)	-9.0	NM_178939	68559.0	Mm.12746	NM_178939	ENSMUSG00000027472	Pdrg1	1110004D19Rik|AU020945|AV006589|Pdrg	p53 and DNA damage regulated 1	protein-coding	6.97742385408674	7.52089444171502	6.91131062270933	6.92243630398336	7.00397370264629	7.46704580594447	7.06760813656276	7.29558823506072	0.146728285288834	0.525094604584402	0.783229855070132
Merged-chr17-66220557-4	chr17	66220463	66220663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97043.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	6.23866515506169	5.85179304455436	6.10163932757937	6.26113459793636	6.36439698781508	5.92196428119448	6.26236348711545	6.23530368094274	0.129881061858035	0.59906073673423	0.826146116839364
Merged-chr2-33427224-4	chr2	33427134	33427334	+	904.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276332, intron 1 of 1)	MIRb|SINE|MIR	4090.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	5.16573597272678	4.92716901368376	4.69997594436589	4.90249779940862	4.67993869033513	4.56460158564624	4.67821318457019	4.91810546566715	-0.444185331959049	0.195398225536588	0.496214149431049
Merged-chr14-104547460-4	chr14	104547369	104547569	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24803.0	NM_026047	72486.0	Mm.291811	NM_026047	ENSMUSG00000022120	Rnf219	2610206B13Rik|2810449K13Rik|AI451544	ring finger protein 219	protein-coding	4.51378863224766	4.43865586874744	4.75000429352439	4.89280601792878	4.60974978616875	4.35490968284271	4.65427794244574	4.84979311559385	-0.0984486262651639	0.792700614733657	0.919670704396385
Merged-chr5-16553483-4	chr5	16553391	16553591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010427)	promoter-TSS (NM_010427)	-4.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	6.67455968340504	6.60938417687987	7.25593859043682	7.44590754716531	6.78852334449932	6.73707989430998	7.12561914205121	6.96914239117793	-0.202827107556507	0.433870160014189	0.723256357491443
Merged-chr13-30695372-4	chr13	30695265	30695465	+	858.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 3 of 7)	intron (NM_134068, intron 3 of 7)	35306.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	5.16580858502015	4.7738890470356	4.14915576258272	4.14825120957403	4.12719946759922	4.61201411272761	4.13159627601524	4.29776652166571	-0.735138644898684	0.119510587244964	0.382544521554412
Merged-chr12-82246613-4	chr12	82246490	82246690	+	957.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	L1M4c|LINE|L1	-64759.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	4.64465842727694	4.77784854663225	4.94072755793736	4.92233320953122	4.64785522968894	4.69233204166858	4.70384047946667	5.00149209397528	-0.142899522065786	0.674724901154564	0.866305489723307
Merged-chr11-93725860-3	chr11	93725797	93725997	+	854.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	159869.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	3.75168371411594	3.94931748432508	4.28825282335421	4.34175255933289	3.65432307849607	4.28892958515433	4.18666730052733	3.97113106866296	-0.187405418339977	0.696337702383955	0.877172308963588
Merged-chr10-17579952-4	chr10	17579854	17580054	+	845.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143274.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	4.40097976328602	4.46669784030199	5.04024124483209	4.58358683278114	4.29384334794539	4.44068552877694	4.24486410071839	4.05079464856477	-0.87809834575248	0.0314414623729639	0.172749660381721
Merged-chr17-34033486-4	chr17	34033360	34033560	+	913.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205214, intron 2 of 9)	intron (NM_001205214, intron 2 of 9)	1110.0	NM_001205215	20182.0	Mm.1243	NM_011306	ENSMUSG00000039656	Rxrb	AL023085|H-2RIIBP|Nr2b2|RCoR-1|Rub	retinoid X receptor beta	protein-coding	4.46614221397367	4.27988972018225	4.3348850884341	4.51169017002938	4.83325430137723	4.36626370127433	4.56491274495948	4.46400777720569	0.389898531892818	0.301448145347312	0.613453913648291
Merged-chr17-24745739-4	chr17	24745635	24745835	+	964.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7253.0	NM_001357342	328779.0	Mm.328848	NM_001012402	ENSMUSG00000039628	Hs3st6	3-OST-6	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding	4.62714176240131	4.75859705261697	4.00148620575982	4.46636436162428	4.56621884049588	4.63938442748836	4.48696710654657	4.83544079253823	0.311884864686662	0.431561029241498	0.721710551668303
Merged-chr18-34955255-2	chr18	34955164	34955364	+	700.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_010481)	promoter-TSS (NM_010481)	-913.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	3.68594609761542	3.70390083724629	3.35250741408437	3.49919599857954	3.42093835411935	3.46642456629586	3.6213955647597	3.73230167095029	-0.00939939466468038	0.984990222932879	0.994516675368757
Merged-chr8-46141084-4	chr8	46140985	46141185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16939.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	5.84043267158253	5.58876375658253	6.23364211818674	6.19312596503176	5.61024757701986	5.94374341838597	5.92663395440035	6.21133135618526	-0.102927415478868	0.720935047544379	0.888548201779355
Merged-chr10-127422230-4	chr10	127422122	127422322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359246, intron 1 of 23)	intron (NM_001359246, intron 1 of 23)	1355.0	NM_001359243	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	5.74767980196657	6.30256321820378	6.14928742325464	6.01179604175756	6.3552855219404	6.49374419442469	6.30422361663759	6.01748178811337	0.359303405863922	0.152144477388205	0.436075209632563
Merged-chr6-145747316-4	chr6	145747172	145747372	+	935.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-61111.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	4.80060776504177	4.18234264178539	4.69465486070282	4.68458619313452	4.3755391207694	4.48720904636451	4.63494520378187	4.92746180796361	0.0156300547844825	0.968266316554664	0.988694268692349
Merged-chr15-99715074-4	chr15	99714964	99715164	+	847.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_155353)	TTS (NR_155353)	-2529.0	NM_010271	14555.0	Mm.252391	NM_010271	ENSMUSG00000023019	Gpd1	AI747587|Gdc-1|Gdc1|mKIAA4010	glycerol-3-phosphate dehydrogenase 1 (soluble)	protein-coding	4.25523859023022	4.31338085845808	4.05449942406181	4.20967386848834	4.733311737373	4.42988250698923	4.23734739792463	4.54383286668796	0.69434760960167	0.0741643015798158	0.293404892293781
Merged-chr12-70232112-4	chr12	70232013	70232213	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045174, exon 2 of 5)	non-coding (NR_045174, exon 2 of 5)	4272.0	NR_045174	414124.0	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	4.61442878610998	4.00039573948731	4.06440303003181	4.46670979561956	3.99924245353081	3.95880313852142	4.52257247513749	4.61204166089994	-0.0261490839111794	0.954835536282619	0.983860069670035
Merged-chr18-64972389-1	chr18	64972289	64972489	+	740.0	f0_balb.idr	intron (NM_001114386, intron 1 of 30)	B4A|SINE|B4	-51138.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	3.41308780423807	3.82287917005449	3.65429007196347	4.13745951980636	3.53389386310094	3.77199979623243	3.74444149048501	3.80744066526691	-0.256426426858537	0.619416825679178	0.836564716145537
Merged-chr5-113007206-1	chr5	113007106	113007306	+	558.0	f0_balb.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	8332.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	3.19204969526679	2.92748162352532	3.08767674167357	3.07140205309592	2.88128726322616	3.01711185069541	2.83688044591549	2.77654729367244	-0.850287531636088	0.16239102220236	0.451604052005589
Merged-chr5-151211063-4	chr5	151210951	151211151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20858.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	5.33217923475003	4.90877379990511	4.70368039639153	4.75369628988989	5.72026782008487	5.61867544594785	5.49510281202622	5.51946739288271	1.20303658694341	0.000100114680082801	0.00203195403866943
Merged-chr3-101800037-4	chr3	101799931	101800131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36192.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	6.30641156529998	5.95740336733072	6.21840782270865	6.19981062757653	5.85639249407464	5.67152849828681	6.35787322329256	5.80268981579703	-0.351495683660586	0.188325372829497	0.486898830868141
Merged-chr17-78410887-3	chr17	78410780	78410980	+	836.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 2 of 9)	intron (NM_001360407, intron 2 of 9)	7272.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	3.58591931839793	3.13425513841808	3.7366706377512	3.70124314265566	3.65082661970236	3.70346101668641	3.51842083069253	3.47367639064339	0.0828439734599686	0.875950860835315	0.953371302804582
Merged-chr11-64718863-4	chr11	64718756	64718956	+	978.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-260179.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	5.14261166478383	5.19810679461941	4.97239647636123	4.94033765903878	5.24949904607117	5.1837586430345	5.45077201606585	4.81393671640648	0.257217160454536	0.422492935398666	0.714750979996272
Merged-chr11-22972935-4	chr11	22972764	22972964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361661)	promoter-TSS (NM_001361661)	2.0	NM_001361661	17846.0	Mm.259903	NM_144514	ENSMUSG00000051355	Commd1	AI256843|Murr1|U2/Mu	COMM domain containing 1	protein-coding	5.23107503335535	5.33513628341765	5.19891414980915	5.42224405506255	5.44978033542662	5.74474639809088	5.13992700687874	5.43821794659056	0.259775879486772	0.381218269283083	0.683526515664875
Merged-chr19-7217682-4	chr19	7217595	7217795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007750)	promoter-TSS (NM_007750)	-79.0	NM_007750	12868.0	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	7.85152391026868	7.85312537447747	8.10728188132245	7.77008442149711	7.64932652627594	7.65317571889887	7.29390646482867	7.4101638080185	-0.501451088639717	0.00691731323892663	0.0603687394597301
Merged-chr3-88000583-4	chr3	88000488	88000688	+	868.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109758)	promoter-TSS (NM_001109758)	-232.0	NM_001109758	12032.0	Mm.4598	NM_007529	ENSMUSG00000004892	Bcan	Cspg7	brevican	protein-coding	3.82361592442895	3.77989264414926	3.87771411406002	4.04849763398141	4.30459338011752	3.88801769407574	3.96186559410001	4.19809516235054	0.557847787731057	0.206285179806487	0.510210725476936
Merged-chr11-93729333-4	chr11	93729229	93729429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	156437.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	6.00025033715832	5.7174435122501	6.15627957361341	6.44633519048503	6.59126411286253	6.48889593767646	6.45150897223817	6.60232137713044	0.608437163651512	0.0178694276312301	0.118607284139851
Merged-chr19-40402431-3	chr19	40402335	40402535	+	948.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034964)	promoter-TSS (NM_001034964)	-125.0	NM_001034964	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	4.22196148690012	3.92781927750643	4.09390325364521	4.29508030745677	3.82607804582024	3.65723692113969	4.03038818626655	4.09137901687325	-0.642886995104248	0.149862654983975	0.432314642043898
Merged-chr10-121466646-4	chr10	121466558	121466758	+	865.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	9592.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	4.79159818030499	4.76286687407715	4.59851512230682	4.31796842447222	4.74131991987574	4.92807527845982	4.73324466701402	4.78917708218292	0.392325232220858	0.270446559478216	0.582296242549812
Merged-chr14-54230845-4	chr14	54230731	54230931	+	577.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23098.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	3.54815903016383	3.40295933649259	3.34148827196456	2.99249028152591	3.42280592006631	3.06249373274954	3.15025056359227	3.49785444261555	-0.109903098114037	0.851186432868985	0.943894442930937
Merged-chr3-89360486-3	chr3	89360397	89360597	+	806.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029974, intron 3 of 15)	L2|LINE|L2	4756.0	NM_029974	77772.0	Mm.164013	NM_029974	ENSMUSG00000042672	Dcst1	A330106H01Rik	DC-STAMP domain containing 1	protein-coding	3.50019714874781	3.36250909628538	2.96139705752095	3.57856217010014	3.15260318756125	3.34033186286737	3.27574517645585	3.28623496260566	-0.422613691546511	0.463956214004367	0.745141798249438
Merged-chr6-88242703-3	chr6	88242594	88242794	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20426.0	NM_019964	56691.0	Mm.272871	NM_019964	ENSMUSG00000048206	Dnajb8	1700016F14Rik|1700031F10Rik|AI326313|mDj6	DnaJ heat shock protein family (Hsp40) member B8	protein-coding	3.13376690035448	3.12379387547307	3.19085457944557	3.16278034896253	2.94038988431799	2.98584851301797	3.23188885874959	3.07336317972593	-0.38035432854985	0.502685374614351	0.769846291295731
Merged-chr12-101029242-7	chr12	101029136	101029336	+	997.6493529999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362342)	promoter-TSS (NM_001362342)	-345.0	NM_026681	68339.0	Mm.156217	NM_026681	ENSMUSG00000021182	Ccdc88c	0610010D24Rik|AV000935|AW324073|Daple|mKIAA1509	coiled-coil domain containing 88C	protein-coding	4.32794110531011	4.35546127151145	4.69901214802166	4.47347779445951	4.70987747918831	4.54962601189586	4.44386347851792	4.79767430767501	0.370095941171606	0.311184049514545	0.623234990348648
Merged-chr7-16053363-4	chr7	16053256	16053456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18489.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	5.8296252076555	5.90391710638556	5.9654947995833	5.81872653236269	5.8995720265857	5.90778876377381	5.86984142125762	5.64871397308345	-0.0600516257037109	0.807279840654536	0.925729780371477
Merged-chr4-126260965-4	chr4	126260852	126261052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1453.0	NM_013718	27096.0	Mm.8392	NM_013718	ENSMUSG00000028847	Trappc3	1110058K12Rik|AI835942|AU019197|Bet3	trafficking protein particle complex 3	protein-coding	6.35329420316983	6.38033375103494	6.37146708697155	5.9743111909401	6.12560715436241	6.30523110085571	6.05651885820302	5.82558514994815	-0.27211350559956	0.281358707652317	0.59344034883054
Merged-chr2-91101577-4	chr2	91101474	91101674	+	994.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011355, intron 2 of 4)	intron (NM_011355, intron 2 of 4)	4896.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	4.51264578110841	4.90840846071396	4.10843322953246	4.51968109060929	4.34206157133184	4.99333959178428	4.83237954317921	4.85296654972899	0.478263571516332	0.244105592007524	0.555188903805712
Merged-chr14-17632002-1	chr14	17631902	17632102	+	610.0	f0_balb.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-28958.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	3.57363466672963	3.51651158188894	3.62280759824532	3.36239844470129	3.28269720879071	3.06191119358377	3.09187408486099	3.71232389319268	-0.704401924474297	0.224133485527665	0.532292211919326
Merged-chr5-110376996-4	chr5	110376911	110377111	+	855.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142642, intron 11 of 18)	intron (NM_001142642, intron 11 of 18)	10116.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	3.93412997409746	3.82431865186416	3.72424852662139	4.06006053433434	4.1289727913407	3.72235435036794	3.76546173608726	4.19402008762088	0.203913643459739	0.659569554878233	0.858382267322651
Merged-chr14-122644401-4	chr14	122644304	122644504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 8 of 24)	ORR1B2|LTR|ERVL-MaLR	110076.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	5.88126013693319	5.66765102338028	6.3311037714265	6.64741825494716	5.74477293403486	5.4104595430062	6.0854427775483	5.64769361242329	-0.719394191682953	0.0268389733711685	0.155745254001826
Merged-chr19-46648769-4	chr19	46648686	46648886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177813, intron 2 of 3)	intron (NM_001177813, intron 2 of 3)	24214.0	NM_007809	13074.0	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	7.21091667187841	7.20496685272374	7.70206066563854	6.93756628612196	7.37958787988346	7.36688315165359	7.06012264796991	7.12686964691905	-0.054407635685768	0.811113738283477	0.926883359837906
Merged-chr16-36982574-4	chr16	36982476	36982676	+	852.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358217, intron 1 of 3)	intron (NM_001358217, intron 1 of 3)	-3440.0	NM_001037321	207215.0	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	4.44177522756895	4.24953393812036	4.24351417687213	3.99746044165239	4.08163124235658	4.01904471011549	4.1807719698098	4.24085947160859	-0.246223402654527	0.552784294490402	0.799873237323185
Merged-chr19-11431402-4	chr19	11431321	11431521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12137.0	NM_021718	60361.0	Mm.33957	NM_021718	ENSMUSG00000056290	Ms4a4b	AI463180|Chandra|Ly116	membrane-spanning 4-domains, subfamily A, member 4B	protein-coding	6.07840983994818	5.97588684298316	5.88662852411213	5.15762155201523	5.48436343151442	5.12564173688661	5.28899051089306	5.46564637623532	-0.776097639842298	0.0212567325918715	0.133295125465318
Merged-chr15-25751740-3	chr15	25751662	25751862	+	945.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 19 of 40)	intron (NM_019472, intron 19 of 40)	-1444.0	NM_001353142	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	3.48362985877804	3.65173321418594	3.98025583682991	4.17811362728113	3.5153314132905	3.33082649758817	3.58581890984666	3.54135803839479	-1.14535816897172	0.0317008061853718	0.173651814950637
Merged-chr9-123863368-4	chr9	123863276	123863476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1347.0	NM_011798	23832.0	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	5.75520437459632	5.80865552046584	5.92717768960716	5.96931565148012	6.30642530054267	5.79757515586086	5.96330860237601	6.32897759000566	0.397593615120657	0.122474736851585	0.387869746718919
Merged-chr11-121804385-4	chr11	121804290	121804490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25828.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	7.74249725348449	7.73773070560529	7.67253072247749	7.49651254105767	7.49166232482104	7.59795922976324	7.41328792625951	7.322422826753	-0.262753642350066	0.139032296509378	0.414593226669937
Merged-chr17-24696104-4	chr17	24695965	24696165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357836)	promoter-TSS (NM_001357836)	91.0	NM_023040	11692.0	Mm.28124	NM_023040	ENSMUSG00000040888	Gfer	Alr|ERV1	growth factor, augmenter of liver regeneration	protein-coding	6.41293993458214	6.72411107524678	6.39615599558331	6.44314423697558	6.73172528902649	6.72464258913202	6.54683669624392	5.99237256499818	0.0519014209518695	0.836237413480537	0.93770267971445
Merged-chr12-84019210-4	chr12	84019138	84019338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9736.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	4.97077717250487	5.29165827719709	4.97159267007718	5.09931595893598	5.30160025876148	5.72420842956487	5.4234643117405	5.392835519712	0.664657470000845	0.0267736585149354	0.155493002564832
Merged-chr18-46213320-3	chr18	46213207	46213407	+	678.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178872)	promoter-TSS (NM_178872)	-700.0	NM_178872	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	3.56358497730029	3.32882873539069	3.38990186342632	3.09107307572572	3.73276313762368	3.93342018347147	3.70119543765367	3.50658178225051	1.27326329549204	0.0130152605117096	0.0950709954444824
Merged-chr2-14229292-4	chr2	14229153	14229353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008625)	promoter-TSS (NM_008625)	-161.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	5.09071298816353	5.34322737880301	5.2568975130486	5.39982939801362	5.30791107543737	5.39964109408393	5.10160375362011	5.39941435115431	0.0295081541036557	0.919803765065045	0.970406583631903
Merged-chr19-12818666-4	chr19	12818561	12818761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134152, intron 3 of 8)	L1MA9|LINE|L1	20082.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	5.34509526959349	5.04574972965858	5.1817938891698	5.31409306564365	5.01066090591748	4.77915982044408	4.48310881773908	4.44971569254809	-1.01542451604874	0.00431520265684288	0.0425241326196067
Merged-chr7-115063129-3	chr7	115063019	115063219	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111845.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	5.62155997615897	5.40688644323558	5.60053523950084	5.9544158650111	4.04823041271612	4.36718790621871	4.6332153721517	4.34480303532627	-2.74506128078918	4.06113426143433e-13	4.71561950399077e-11
Merged-chr5-96922142-1	chr5	96922042	96922242	+	722.0	f1_balb.idr	intron (NR_131152, intron 2 of 2)	intron (NR_131152, intron 2 of 2)	870.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	3.37971837156796	3.29243199107819	3.21381207552735	3.03238189650048	3.00801770558697	2.98939704791728	3.1419018123429	3.61400425011024	-0.065335974129528	0.912951027403393	0.96737778834115
Merged-chr17-42883124-4	chr17	42883020	42883220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6696.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	5.16936161667909	5.60036915274161	5.66077421059891	5.49634176694759	5.45839138137701	5.20226069061024	5.42597691784793	5.63263997992029	-0.0960145631404047	0.741419683885606	0.898179889473609
Merged-chr7-83853250-3	chr7	83853153	83853353	+	921.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31088.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	4.68370702619023	4.36266875239261	5.35410723556871	5.40118591054317	4.12014462012414	4.50325257432499	4.3499748373626	4.96730194536238	-1.04732624248338	0.0227803897780262	0.13944244010646
Merged-chr5-64230313-4	chr5	64230214	64230414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289514)	promoter-TSS (NM_001289514)	-43.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	8.44915111106194	8.55180251638312	8.58569415276306	8.52650659256941	8.48889020890589	8.47646030201788	8.50449018604861	8.38235616372805	-0.0817530273525388	0.571764938382874	0.810791045904066
Merged-chr3-104541464-4	chr3	104541369	104541569	+	874.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29551.0	NM_001310698	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	4.90396105163908	4.8685963025944	4.50555038784973	5.15168632109661	4.56157545255439	4.54619308608359	4.15884156790172	4.22339736166863	-1.13025649795033	0.00475550933747646	0.0458218607312377
Merged-chr19-47127236-3	chr19	47127137	47127337	+	942.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011053, intron 29 of 35)	intron (NM_011053, intron 29 of 35)	11057.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	4.17537943424997	3.9202696485075	4.6572546751554	4.60286564237609	4.41174458373763	4.03126099458704	4.60086565848927	3.96320493966909	-0.228168365830274	0.62561356736299	0.839997329134293
Merged-chr11-100547152-4	chr11	100547052	100547252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 1 of 11)	MIR|SINE|MIR	1520.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	6.65575199537354	6.64581061181394	6.39070832374041	6.50081726344359	6.67617356491334	6.20970012572451	6.70944273190277	6.93279720535802	0.159208355265808	0.495973823276544	0.766039627500674
Merged-chr18-35495573-4	chr18	35495493	35495693	+	905.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030749, intron 1 of 9)	intron (NM_030749, intron 1 of 9)	3332.0	NM_030749	81500.0	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding	3.79000703459166	3.88859316924075	4.0521032097452	3.71727467690774	4.2164000282041	4.22434244562202	3.8855001120255	4.41677783399532	0.909492032340794	0.0352458739318466	0.186165483867239
Merged-chr6-97458184-4	chr6	97458087	97458287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	1099.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.336587670521	7.36806990611383	7.408116265161	7.4709296609285	7.4241067028209	7.39604804048631	7.39070284815508	7.38331314047189	-0.00314782283103407	0.98526769852037	0.994644146947601
Merged-chr11-17051740-6	chr11	17051640	17051840	+	881.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029861)	promoter-TSS (NM_029861)	-194.0	NM_029861	380686.0	Mm.425666	NM_029861	ENSMUSG00000044629	Cnrip1	1500041B16Rik|3110054C06Rik|5330437A18Rik|AI854501|C2orf32	cannabinoid receptor interacting protein 1	protein-coding	4.16389634463196	3.99668666401662	4.16452775284405	4.16689026317694	4.09926893839928	4.03961671491602	4.2724669385505	4.11635028294891	0.0198676015520586	0.960668569771948	0.986018439623899
Merged-chr2-60019314-4	chr2	60019211	60019411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	106429.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	6.01985299837774	5.73604826288584	6.04168919498625	6.32187222156201	5.8215261382335	5.8376034444016	5.96914586178073	5.78773848911962	-0.331257143142605	0.206565333700324	0.51056782256557
Merged-chr14-40965717-4	chr14	40965646	40965846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	1150.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	5.89472008259803	5.78163301222237	6.04914877131916	6.25749661833642	5.65649178226125	5.8450289132839	6.35715506884506	5.84412403807739	-0.113596804425125	0.688681247198303	0.872934600557885
Merged-chr9-61337347-4	chr9	61337248	61337448	+	756.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35018.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	3.48956595984103	3.7819298276124	3.60771938708619	3.39012640015223	3.93675839875427	4.2007910856791	3.53661478292901	3.42540223545814	0.722369766612984	0.167972702641727	0.459915036621355
Merged-chr2-160019125-4	chr2	160019004	160019204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040499, intron 1 of 3)	intron (NR_040499, intron 1 of 3)	2451.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	6.61055938707723	6.89284572087284	7.01225136819434	6.81674079456574	6.85860756956604	6.85192580573706	6.64117209861531	6.65485852438116	-0.114878192515555	0.578511418055603	0.814741778472523
Merged-chr1-156043217-3	chr1	156043093	156043293	+	709.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172843, intron 2 of 6)	intron (NM_172843, intron 2 of 6)	2332.0	NM_022329	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	3.32328091508918	3.42515048488159	3.32367135155234	3.29577366945426	3.65134145620416	3.72933183591221	3.5957530691799	3.84297740050387	1.19609203150961	0.0134256326645678	0.0971951899340183
Merged-chr17-27042958-4	chr17	27042861	27043061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13702.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	6.13041506706643	5.80591975164197	5.68780778682047	5.92825565100678	5.8641170815807	5.66521322781213	5.96337249425276	5.94715448684871	-0.0524993953582037	0.83726280721239	0.938216771954829
Merged-chr13-81055749-3	chr13	81055641	81055841	+	935.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	Lx7|LINE|L1	91667.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	3.56524538894119	3.53192396356568	3.86152489935418	4.0352324990621	3.31713724960712	3.29561145385486	3.65689273048459	3.61799375387053	-0.948127518656685	0.0749747190371998	0.295426886868275
Merged-chr2-131171588-3	chr2	131171485	131171685	+	983.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027641, exon 7 of 7)	3' UTR (NM_027641, exon 7 of 7)	3225.0	NM_027641	70997.0	Mm.252722	NM_027641	ENSMUSG00000027329	Spef1	4931426K16Rik|Clamp	sperm flagellar 1	protein-coding	5.03267993072319	4.70721843794381	4.37089311114926	5.09312116307588	3.172904346604	3.43557998575062	3.37818455175663	3.54306639137886	-5.66789279801004	3.775913927641e-10	2.62980212774519e-08
Merged-chr6-122309893-4	chr6	122309781	122309981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010749, intron 1 of 6)	intron (NM_010749, intron 1 of 6)	1161.0	NM_010749	17113.0	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	6.91109616481296	7.09025077731959	6.92541350730209	6.60017002709057	7.24628636797844	7.11487016205147	6.78187339810843	6.66088000540249	0.133250092129159	0.567008795817419	0.808119800518362
Merged-chr3-90509903-1	chr3	90509803	90510003	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_001293781)	promoter-TSS (NM_001293781)	-405.0	NM_001293778	66511.0	Mm.154136	NM_023215	ENSMUSG00000001017	Chtop	2500003M10Rik|Fop|Srag	chromatin target of PRMT1	protein-coding	3.85758709089141	3.69845210976563	3.42456379817804	3.34689819446305	3.71875721061686	3.77885706116383	3.4745420214386	4.02727664178239	0.531656601140973	0.297126695639251	0.609240682978229
Merged-chr12-102439222-3	chr12	102439152	102439352	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	561.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.22496478550039	5.32195983427701	5.61067872355343	4.96706812439878	5.80139683070471	5.88220508655067	5.89473961967198	5.3532440432496	0.806010677145376	0.00854459295072428	0.0703767162276792
Merged-chr13-76098690-4	chr13	76098599	76098799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029847)	promoter-TSS (NM_029847)	-35.0	NM_001081352	218343.0	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	-	tetratricopeptide repeat domain 37	protein-coding	8.30134146588684	8.32995632640379	8.40515976091188	8.46507213590601	8.33425766808155	8.31203849136908	8.30245574909766	8.39969607419709	-0.0548246274251867	0.711947986464831	0.884700502034922
Merged-chr19-17394007-4	chr19	17393893	17394093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019437)	promoter-TSS (NM_019437)	-50.0	NM_019437	54391.0	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	8.184851950635	8.249662367246	8.10119151574052	7.98983722286184	7.96678094907642	8.05956862228369	8.07511824558552	7.68266843567151	-0.225985442245673	0.192235716606933	0.491824448203475
Merged-chr2-153139616-2	chr2	153139516	153139716	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 10 of 12)	(A)n|Simple_repeat|Simple_repeat	-21685.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	2.54240491775202	2.41537967111031	2.39073665506004	2.68627335859087	2.91466231328301	2.78567949767668	2.90333795557308	2.85908011705421	1.65675398514206	0.0224344927879856	0.138292609522476
Merged-chr10-85957043-1	chr10	85956943	85957143	+	625.0	f0_balb.idr	intron (NM_145422, intron 1 of 11)	intron (NM_145422, intron 1 of 11)	750.0	NM_145422	28088.0	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	2.96278507149554	3.05706809227427	3.43360531918041	3.1788438218429	3.24860898364402	3.20791858514774	3.36911167921686	3.27472318441112	0.39868085460104	0.474158882478812	0.751607118426792
Merged-chr2-28496879-4	chr2	28496781	28496981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139197)	promoter-TSS (NM_139197)	-10.0	NM_139197	227671.0	Mm.484270	NM_139197	ENSMUSG00000026829	Gbgt1	Fgs|Fs	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1	protein-coding	5.7381501635115	5.21321933322181	5.52104091363166	5.25162258064204	5.57054127558587	5.26218438234939	5.29427234782851	5.54332693801212	-0.00233730727836951	0.993813099762719	0.997702270136287
Merged-chr1-34490328-4	chr1	34490215	34490415	+	884.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR48A|LTR|ERV1	-8097.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	3.84140445147004	4.20387259258809	4.05551502364441	3.64164981128651	4.47068191030633	4.45101237698726	4.21955475318924	3.95072150435767	0.899875462286176	0.0445162075460626	0.215259452236494
Merged-chr8-71922815-4	chr8	71922716	71922916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133358)	promoter-TSS (NM_133358)	-9.0	NM_133358	170938.0	Mm.480419	NM_133358	ENSMUSG00000066880	Zfp617	Zfps11-6	zinc finger protein 617	protein-coding	7.848958215489	8.23308097113941	8.08610775284767	7.60829369360708	8.09708778650604	8.15822381295679	7.92162875231089	8.04872585384054	0.129697336789319	0.503983903590132	0.770602128235994
Merged-chr2-62656279-4	chr2	62656173	62656373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-8054.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	6.14333035427	6.02369039677172	6.00146468193958	6.14727570429491	6.23406961963306	5.74725027091886	5.90464117830131	5.811257266452	-0.202670151280346	0.423680724705308	0.715570066410379
Merged-chr1-36918136-3	chr1	36918022	36918222	+	804.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 1 of 40)	intron (NM_018872, intron 1 of 40)	21405.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	3.7807137919779	3.92366132168806	3.46276693121104	3.60930440535607	3.63986138784026	3.51536956924111	3.56407997175886	3.51977220117201	-0.439430028219492	0.372918058003301	0.676623360963981
Merged-chr3-95293806-4	chr3	95293714	95293914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133858, intron 7 of 9)	intron (NM_133858, intron 7 of 9)	10879.0	NM_199475	75007.0	Mm.279287	NM_133858	ENSMUSG00000038712	Mindy1	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|Fam63a|cI-40|mKIAA1390|ni	MINDY lysine 48 deubiquitinase 1	protein-coding	8.28637505457315	8.06195114263845	8.20890566614846	8.44586964788175	7.76764233784888	7.76785624534405	8.02255267122682	8.13788312627713	-0.42580512324917	0.0184932421310886	0.121511167880435
Merged-chr12-98746908-4	chr12	98746821	98747021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160107)	promoter-TSS (NM_001160107)	-47.0	NM_001160107	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	7.40763078475019	7.45722249359456	7.05913509218263	7.26084970944386	7.63322166732595	7.81871060084922	7.65225804948812	7.21275512681273	0.389563057989858	0.0569130926604177	0.249923932535991
Merged-chr1-127009901-2	chr1	127009801	127010001	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179269.0	NM_001081756	210356.0	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	2.96989468222209	2.88670508216963	3.03567845639861	3.21123960249452	3.2482274100446	3.32644477536875	3.08711531270803	3.31922763490168	0.783325808388429	0.176701741566415	0.471896344237267
Merged-chr4-97751229-4	chr4	97751126	97751326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-26400.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	7.60231317874082	7.57315434042378	7.78390006787933	7.90394849969138	7.63631186364979	7.57057995492184	7.81276418549624	7.64169457237516	-0.0823464067594099	0.644388717747511	0.850222339343246
Merged-chr8-128654942-4	chr8	128654848	128655048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30706.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	6.76436245025561	7.26791511650426	7.56453757550016	7.21590898684315	7.56517930873275	7.85768135107327	7.66648823865194	7.55060678291509	0.571598286660989	0.00781426321892204	0.0660819106165679
Merged-chr4-40970289-2	chr4	40970189	40970389	+	688.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290449)	promoter-TSS (NM_001290449)	-617.0	NM_001290449	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	2.42214209701982	2.29467946325616	2.74781850798392	2.36511641348391	2.43900828046467	2.66967415046028	2.79168211912468	2.6257177949855	0.894354164842827	0.210845994350828	0.515475385416391
Merged-chr10-99090077-4	chr10	99089982	99090182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17000.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	6.64098812092297	7.17460355335522	6.96684587937053	6.5204143353639	6.79161132126201	7.06659336037949	7.32186518582466	6.24469769054629	0.0923818675130795	0.743767440115516	0.899073282101141
Merged-chr12-81754851-4	chr12	81754749	81754949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001174107, intron 2 of 10)	intron (NM_001174107, intron 2 of 10)	26321.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	7.13931777199618	7.1600940198504	7.29465265499579	7.30374340733407	7.16694676671181	7.22035035857785	7.23746786075881	7.36966209709652	0.0224017273885624	0.901370507562102	0.963342914941175
Merged-chr14-27443992-4	chr14	27443895	27444095	+	901.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028945, intron 6 of 23)	Lx7|LINE|L1	15161.0	NM_001114879	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	4.51292219777642	4.32324783112211	4.33385703400017	4.89468272909894	4.30710341752546	4.46356136347014	4.78799756741284	4.84093374077264	0.124037487595029	0.762217153919278	0.906834880352543
Merged-chr12-51666865-3	chr12	51666746	51666946	+	846.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172098, intron 1 of 15)	intron (NM_001172098, intron 1 of 15)	-24120.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	3.81751143281034	3.62219192449029	3.90919875482318	3.63923125584046	3.6170807328595	3.83901562859714	3.42418317453921	3.55504145659647	-0.400708863064933	0.410147081217335	0.705557655073318
Merged-chr5-53188810-4	chr5	53188713	53188913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172710, intron 2 of 23)	intron (NM_172710, intron 2 of 23)	24639.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	6.67769368530717	6.44649437116723	6.69374058933568	6.97499291065089	6.75383467747155	6.60904876128676	6.59934542488573	6.51493170170007	-0.142328810327853	0.524927204227285	0.783127443769653
Merged-chr17-50996474-4	chr17	50996383	50996583	+	881.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 3 of 21)	intron (NM_028162, intron 3 of 21)	162895.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	4.29591752872915	3.88158536824424	3.60075235257142	4.19250042692538	4.22560071286704	4.06764064526867	3.97798740039908	3.83793057844689	0.0340062575096701	0.942625511443325	0.979213304897811
Merged-chr4-66857193-4	chr4	66857086	66857286	+	993.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29635.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	6.24232806803922	6.31919414170115	5.9780673446176	6.04214909898357	5.61071273656408	5.79176116183789	5.27056170749362	5.39613517136737	-1.00321720179291	0.000227324524779117	0.00404619463597219
Merged-chr7-45124455-4	chr7	45124293	45124493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013725)	promoter-TSS (NM_013725)	-4.0	NM_013725	27207.0	Mm.196538	NM_013725	ENSMUSG00000003429	Rps11	-	ribosomal protein S11	protein-coding	7.68144347855699	7.71324215807896	7.178809628473	7.34031764551035	7.98136722715383	8.0520716032281	7.89213089703578	7.75781797710302	0.5649674144886	0.003779413841681	0.0383212105180929
Merged-chr2-120576277-4	chr2	120576199	120576399	+	934.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	Tigger7|DNA|TcMar-Tigger	8628.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	4.09403671070857	4.46115823028073	4.33184141140905	4.28030387241859	4.50243695423661	4.45969616508671	4.17693385586712	4.28511055181611	0.163256529406554	0.675427881673111	0.866739042143404
Merged-chr2-22775143-3	chr2	22775035	22775235	+	849.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	808.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	3.22835754808511	3.28572679226668	3.61588098500071	3.16247655877633	3.429655493836	3.63375009531486	3.50179186361258	3.28991859211142	0.493416270421393	0.352724280466697	0.659679630621423
Merged-chr5-65537796-4	chr5	65537687	65537887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310618, intron 1 of 4)	CpG	542.0	NM_001310619	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	6.49324922311864	6.54209429174003	6.29700635025281	6.25604724660875	6.79232629150353	6.33149089892391	6.49381244306702	6.63086904259068	0.27642714543873	0.223868785064789	0.53204528387735
Merged-chr1-55436785-1	chr1	55436685	55436885	+	561.5	f0_balb.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	30839.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	3.21945937082038	3.33858573337035	3.27643023571416	3.57730531028533	3.0196213056465	3.07328731568119	2.95717325682365	3.27464942195821	-1.12038189003319	0.0547739268577958	0.244466600188804
Merged-chr18-23807108-2	chr18	23807008	23807208	+	814.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	3138.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	3.27316217284394	3.55445285777216	3.14891561158404	2.80401657681962	3.26835416864916	3.44778224812765	3.37350439081922	3.4389005099895	0.583028086365691	0.325695689534222	0.637265490488708
Merged-chr1-177258537-4	chr1	177258436	177258636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9769.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	6.54181125282276	6.64866327992508	6.97638035908194	6.54345481152799	6.26126874265725	6.71906557926256	6.1798414396253	6.34639805086095	-0.433385115750869	0.0707511457761046	0.285180123744116
Merged-chr1-36709299-6	chr1	36709234	36709434	+	945.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146107, intron 1 of 10)	LFSINE_Vert|SINE|tRNA	591.0	NM_146107	226977.0	Mm.28521	NM_146107	ENSMUSG00000037351	Actr1b	2310066K23Rik|AA960180|AI851923|Arp1b	ARP1 actin-related protein 1B, centractin beta	protein-coding	4.07200788727453	3.97403545971372	4.07265736786754	3.49913261293279	3.98157183993799	3.60772188633736	3.71813418647426	3.88724773191113	-0.289481790715087	0.558795321767288	0.803379026198747
Merged-chr7-43397615-4	chr7	43397539	43397739	+	826.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10641.0	NM_172900	243958.0	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	4.04186891545751	3.92312647830595	3.84080119779727	4.27572573787842	3.9311458006092	4.01532920672823	3.87862621096649	4.17257797558434	-0.123879303884446	0.779179520425001	0.913841690258744
Merged-chr7-83858162-4	chr7	83858040	83858240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3A|LINE|L1	26201.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	5.74278427413874	5.91259364040698	6.15068168630796	6.35798935060781	5.93472905979963	5.72307147986304	6.21169037284847	6.10706025535785	-0.11278128909561	0.6796980390573	0.86857902618052
Merged-chr10-14174352-4	chr10	14174253	14174453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	207974.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	7.60186036596489	7.71999377952566	8.00444909616624	7.44220109726893	7.5895746340082	7.78049521638398	7.65030264859891	7.43934434344432	-0.106519007008712	0.58836121652276	0.819675135431917
Merged-chr15-98108477-4	chr15	98108393	98108593	+	841.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163487)	promoter-TSS (NM_001163487)	22.0	NM_001163487	18642.0	Mm.272582	NM_021514	ENSMUSG00000033065	Pfkm	AI131669|ATP-PFK|PFK-A|PFK-M|Pfk-4|Pfk4|Pfka|Pfkx	phosphofructokinase, muscle	protein-coding	4.47633720445629	4.54055170249359	4.47705675360438	4.54400503105973	4.32072544611861	4.07404228886102	4.04697205563486	4.39311003013139	-0.690206424780624	0.0761797699543705	0.29814701960643
Merged-chr9-123949635-4	chr9	123949551	123949751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	19041.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	5.71515649143946	5.51165707648509	5.48538054647762	5.89097370547678	5.49974928632514	5.38172828979011	5.3712673959542	5.3638140847477	-0.460666565127717	0.10172382667401	0.350047264556928
Merged-chr9-22003329-2	chr9	22003229	22003429	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029939)	promoter-TSS (NM_029939)	341.0	NM_001293650	19089.0	Mm.214593	NM_008925	ENSMUSG00000003402	Prkcsh	80K-H|PKCSH	protein kinase C substrate 80K-H	protein-coding	3.73976281514174	3.77562104686738	3.93516755894394	3.72075523349573	4.00117226387042	3.62650725111679	3.61698518436359	3.83918935723309	0.00387957793521265	0.993353514645772	0.997671773391494
Merged-chr13-3918170-4	chr13	3918065	3918265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019671)	promoter-TSS (NM_019671)	55.0	NM_019671	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	6.81296187004745	6.60423314256708	7.20562697607496	6.90932711149099	6.42787476893433	6.56081701353138	6.59077249011124	6.33929904865992	-0.599241711465079	0.00790521391764773	0.0666530705335522
Merged-chr2-103059419-3	chr2	103059326	103059526	+	604.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175094, intron 1 of 10)	intron (NM_175094, intron 1 of 10)	14087.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	3.50017767884355	3.42257337582281	3.60802148936927	3.42763848002457	3.56987736510835	3.22656195583831	4.01938551521877	3.38196290471889	0.31668587260874	0.5580373303055	0.802963980746693
Merged-chr4-26441717-4	chr4	26441593	26441793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95041.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	6.08198137001909	6.15255552294249	5.90385315791974	6.51943401552774	6.03541711264346	6.23754364734558	6.03102960490889	5.87539583053936	-0.243441032793342	0.352826533651053	0.659735990057428
Merged-chr10-98915035-4	chr10	98914945	98915145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026482)	promoter-TSS (NM_026482)	-107.0	NM_001359507	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	7.98484113319014	7.82286881791265	7.5794026380241	7.73832574784957	7.8823194378446	8.0073848979781	8.18921724405504	7.59255176965798	0.190758873019852	0.326514900771577	0.637980842790637
Merged-chr18-36713554-4	chr18	36713454	36713654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13261.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	7.62516392912459	7.5419128493314	7.37815391266541	7.38140241008167	6.8010972116616	6.61624014737792	6.73309666506558	6.7627709797709	-1.02599838991476	8.55500889459578e-08	3.71076769109344e-06
Merged-chr15-88537398-4	chr15	88537325	88537525	+	826.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62877.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	3.76037910961522	3.61793055569856	3.53987076441947	3.59139085888289	3.97352284963026	3.71593815897725	3.79457356129746	3.90246241077822	0.685232559562129	0.130878000995556	0.402721996924723
Merged-chr7-89337988-4	chr7	89337883	89338083	+	969.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 2 of 14)	intron (NM_001360746, intron 2 of 14)	804.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	4.88792906984981	4.82107334785061	4.74132737348421	4.66218180979848	4.86612433696332	5.09408116824182	4.83022836537183	4.65774409935003	0.200190247269908	0.548527125924844	0.797491978761479
Merged-chr16-91731269-4	chr16	91731168	91731368	+	886.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	1897.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	5.04699844195452	4.44451413589003	5.16836596525326	5.35238507796553	4.70178131038377	4.25117693525773	4.78172635015061	5.1930774980395	-0.548313092738488	0.195410709398121	0.496214149431049
Merged-chr15-76625670-3	chr15	76625574	76625774	+	765.888916	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	TTS (NM_183091)	TTS (NM_183091)	410.0	NM_025842	66914.0	Mm.30028	NM_025842	ENSMUSG00000115987	Vps28	1110014J03Rik|CIIA|D730005C08Rik	vacuolar protein sorting 28	protein-coding	4.24487409747775	3.68560763644262	3.71923594016702	3.40090040965303	3.87583408708074	4.00942419236808	4.18556724287487	4.2427078160136	0.809270091714619	0.101708947514319	0.350047264556928
Merged-chr10-8881299-6	chr10	8881166	8881366	+	935.5277710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	4804.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.31309884283687	4.46468079584646	4.51127793802264	3.91359661274742	3.93745380843803	4.25772818772257	3.84376396299924	4.54418934180224	-0.348190378516944	0.452576042185198	0.736907471273024
Merged-chr14-32159346-3	chr14	32159240	32159440	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033988)	promoter-TSS (NM_001033988)	-547.0	NM_001033988	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	4.88454971500819	4.5707609525786	4.91663272113231	4.35990362061976	4.40770535788282	4.77558510918222	4.22156703740655	4.43065725509935	-0.485501681114647	0.224740970490903	0.533212998454623
Merged-chr15-12404718-2	chr15	12404618	12404818	+	841.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081064, intron 9 of 23)	RSINE1|SINE|B4	83222.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	3.16343814041185	2.83313192575524	3.44697643358644	2.82108431731657	2.63725722062316	2.76161532066558	2.85800702772736	2.86649610797276	-1.36885143149366	0.0443194152648419	0.21472794113475
Merged-chr2-84645608-3	chr2	84645512	84645712	+	870.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	AT_rich|Low_complexity|Low_complexity	3868.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	3.03076502708378	3.01372629832029	2.97352451999457	2.71037311578982	2.89300346660691	3.08363135248397	2.70597764059863	2.78220311782048	-0.256682663672567	0.685192124551138	0.871242613005331
Merged-chr19-40649163-1	chr19	40649063	40649263	+	590.0	f1_balb.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-10607.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	3.17455179632827	2.7538614188728	2.90936022249315	2.61394787133518	2.98777686211922	2.67967137687042	2.7101936700483	2.71740707439764	-0.401410716669295	0.554316970611836	0.800708816689258
Merged-chr15-6534070-3	chr15	6533961	6534161	+	954.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45786.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	3.62400945218208	3.75620441632071	3.6785829888905	3.8504894288075	3.37095208501015	3.74202538398178	3.90146558860834	3.62252912431541	-0.217151459326832	0.65854952812555	0.857904281262009
Merged-chr17-21370550-4	chr17	21370455	21370655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK9C_I-int|LTR|ERVK	-13193.0	NM_172486	210503.0	Mm.33443	NM_172486	ENSMUSG00000062743	Zfp677	A830058L05Rik|Tce8	zinc finger protein 677	protein-coding	5.65758438294349	5.30201977861573	5.40349429509795	5.73569567113993	5.18216278443827	5.14982771981722	5.19565252809243	5.15071038904381	-0.680746514437572	0.0211428447239065	0.132826702965838
Merged-chr3-81113082-4	chr3	81112940	81113140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	B4A|SINE|B4	76624.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	5.26334206039231	4.87420812415445	5.03164459012193	5.43595921513723	5.60444162495755	5.17216032404132	5.29703833838736	5.22989315647089	0.294203912191947	0.365528378763673	0.670295715323899
Merged-chr8-79372864-7	chr8	79372792	79372992	+	970.095215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	26576.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	4.71764968363415	4.47975915176781	4.52031525503059	4.78063177129509	4.77698063778931	4.46557879722532	4.54175028476076	4.85316781978886	0.0741067224472613	0.837158384886372	0.938189376728559
Merged-chr8-79392807-4	chr8	79392718	79392918	+	818.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	6650.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	4.11474728456822	4.55353473276495	4.69714705933917	4.70343968837059	4.41564117277026	4.7165870570996	4.35143473359353	4.76390506224934	0.0468404531424905	0.905659062813144	0.964930449989641
Merged-chr7-132803722-3	chr7	132803616	132803816	+	758.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	9480.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	3.11119926452972	3.05393496932518	3.27606122589908	3.44306755758849	2.66947079545948	2.9615030896237	3.04087962658792	3.0502140628085	-1.28905454657805	0.0436305271986825	0.212615919075225
Merged-chr6-50681920-3	chr6	50681815	50682015	+	612.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27522.0	NM_021892	60531.0	Mm.157158	NM_021892	ENSMUSG00000029831	Npvf	Rfrp	neuropeptide VF precursor	protein-coding	2.98408185834531	2.83027026409361	3.14728365175672	3.16650334263068	2.83703944577557	2.83384553079358	2.78929748231431	2.72802155514031	-1.11203124368715	0.0795157330533948	0.30534988576067
Merged-chr11-5109912-4	chr11	5109787	5109987	+	771.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080595, intron 14 of 14)	intron (NM_080595, intron 14 of 14)	9722.0	NM_001290493	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	3.44526678743483	3.32352825236655	3.44572668571468	3.5974958006895	3.43473778643056	3.61484321800569	3.48570442383164	3.20263961096773	-0.0786448778996643	0.879776050750804	0.954990308761098
Merged-chr11-116850250-3	chr11	116850162	116850362	+	865.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028865)	TTS (NM_028865)	2832.0	NM_011358	20382.0	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	3.69129599661581	3.66104041176069	3.63306754025283	3.99369005909632	4.23622086943379	3.86755947943193	3.7333939174309	4.16416246643185	0.701040795242722	0.144315111529459	0.423299349880718
Merged-chr16-4727077-2	chr16	4726977	4727177	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136066, intron 1 of 5)	intron (NM_001136066, intron 1 of 5)	716.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	3.92339577370907	3.77173822520824	3.87154508898007	3.96603574736041	3.64208034412987	4.24096919560343	3.95726626807084	4.4581027001718	0.574724967863581	0.224294094201933	0.532593719348792
Merged-chr11-29728114-4	chr11	29728006	29728206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024226, intron 1 of 6)	intron (NM_024226, intron 1 of 6)	9543.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	6.62526142289455	6.36588496721659	6.62643407485823	6.63324772556567	6.49945366619081	5.84058337495636	6.150202770409	5.82593390095028	-0.657389510783193	0.011992283633617	0.0898998164041307
Merged-chr5-24686861-4	chr5	24686706	24686906	+	911.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305264, intron 1 of 14)	B1_Mur2|SINE|Alu	991.0	NM_001305264	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	3.80709201528637	4.06683004882349	3.69513388894519	3.23508596923689	4.34024511863461	3.9305213027842	4.03424464625003	3.95779606002529	0.974357368037095	0.0558349147538532	0.247371679152528
Merged-chr13-105224164-3	chr13	105224089	105224289	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 5 of 7)	intron (NM_001360891, intron 5 of 7)	68825.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	3.59065093849333	3.0967372137526	3.48841896985595	3.34830944872182	3.39393812096975	3.49138062909836	3.42035012538133	3.58902088236108	0.291180972014306	0.578721681332048	0.814941154876329
Merged-chr16-75877403-4	chr16	75877306	75877506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 4 of 7)	intron (NM_023380, intron 4 of 7)	31860.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	7.78495585179609	7.86918599006598	7.78626254837741	7.96188283770019	7.64971957683486	7.5306631686799	7.5774124484795	7.44120757262509	-0.397184442548289	0.0180926900305138	0.119641358573201
Merged-chr2-155284850-3	chr2	155284737	155284937	+	883.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004721, intron 11 of 11)	intron (NM_001004721, intron 11 of 11)	8473.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	3.30257405017183	2.99861750410947	3.30299012735341	3.04840609832935	3.65128297314872	3.42435162968417	3.9619253788658	4.39067907180677	2.40173563894449	2.41098180553443e-05	0.000599829688696732
Merged-chr7-98120462-4	chr7	98120359	98120559	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256081)	promoter-TSS (NM_001256081)	-966.0	NM_008663	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	4.80371546331044	5.00299307162067	4.35621595635537	4.83544589065562	5.14690418996167	5.05121422808633	5.05162542486741	4.68226332123756	0.441646659544594	0.215609248951207	0.521841978003262
Merged-chr5-137628094-4	chr5	137628014	137628214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1009.0	NM_001168652	231798.0	Mm.200763	NM_146164	ENSMUSG00000093445	Lrch4	2810008P14Rik|2900069C24Rik|AI558103|LRN|LRRN4|SAP25|mFLJ00248	leucine-rich repeats and calponin homology (CH) domain containing 4	protein-coding	6.0093169688514	6.3242649230052	5.94578771207092	5.68554106970208	6.02923768314419	5.906467171999	5.80054351278146	5.61618532515013	-0.23626278351781	0.39463606394358	0.693682147756976
Merged-chr6-87452142-3	chr6	87452041	87452241	+	731.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23147.0	NM_009756	12154.0	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	b2b2711Clo	bone morphogenetic protein 10	protein-coding	3.0455406330493	3.36434918338538	3.04594057407132	3.02187395509982	2.69587615850325	2.74137856689303	2.91281307338821	3.10174787666375	-1.12332449817813	0.0812316217716392	0.309324445332309
Merged-chr8-109863606-4	chr8	109863515	109863715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009677, exon 24 of 24)	3' UTR (NM_009677, exon 24 of 24)	-4988.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	6.40279823527004	6.25355187228185	6.07475162880779	6.55365656432458	6.35261866587082	6.16003366839322	6.55930947883302	6.15544145987084	-0.0400569780194916	0.869462202394408	0.951046518590377
Merged-chr5-142909297-4	chr5	142909210	142909410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2556.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	6.33621970522707	6.6199987081971	6.25847125902005	6.238949032317	6.61527889157469	6.72424297979083	6.82648381356068	6.72384273166909	0.5139185094379	0.0180321578579295	0.119307581722399
Merged-chr16-57257786-2	chr16	57257686	57257886	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B2|LTR|ERVK	-26320.0	NM_001358433	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	2.67018130605605	2.71913827899795	2.72966179152915	2.18206642706194	2.42109148639614	2.58187381817501	2.39654509544341	2.47418601505892	-0.661032387859968	0.386753279088015	0.687797608117846
Merged-chr8-124896922-4	chr8	124896835	124897035	+	926.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111141)	promoter-TSS (NM_001111141)	770.0	NM_198103	102058.0	Mm.347360	NM_198103	ENSMUSG00000074030	Exoc8	AI414418|EXO84|Exo84p|R74783|SEC84	exocyst complex component 8	protein-coding	4.15860527531785	4.16607424911852	4.72154830243684	4.41999621331369	4.14667781054788	4.47577204358754	4.19062441552618	4.50735636673287	-0.125514772105295	0.760369408889863	0.90608608711196
Merged-chr9-80081158-4	chr9	80081056	80081256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311110, intron 1 of 23)	ORR1E|LTR|ERVL-MaLR	14253.0	NM_146003	215351.0	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	6.21712158991837	5.71579925521001	5.7879299470223	6.21582196248135	5.828680064017	5.74495811443567	6.27372559800716	6.19542658599731	0.020614769526818	0.94128550716191	0.978832177973057
Merged-chr12-38904674-4	chr12	38904568	38904768	+	847.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	120957.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	4.55225697855489	4.49751665837063	4.77739542376979	5.26996708021212	4.17069839127334	4.35929568903844	4.53180386512518	4.27852097010128	-1.10600299558314	0.00761523858116932	0.0648456833316247
Merged-chr15-74535788-2	chr15	74535688	74535888	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359759, intron 2 of 30)	intron (NM_001359759, intron 2 of 30)	19592.0	NM_001359759	107831.0	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding	2.95930676166802	2.75547242002601	2.83275967329706	3.01549202501999	2.9692079824975	3.00449290108753	2.949238539744	3.17821178398442	0.53150344409677	0.375570669351663	0.678547723780542
Merged-chr6-50295362-3	chr6	50295259	50295459	+	770.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347213, exon 24 of 24)	3' UTR (NM_001347213, exon 24 of 24)	-33590.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	4.63417353628366	4.29341207329689	4.36200107642665	4.88817191622256	4.16082809618906	4.08192867812438	4.29861076492391	4.26930220375343	-0.899312262655638	0.0287987257431153	0.163024057552824
Merged-chr5-63837268-3	chr5	63837169	63837369	+	925.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	MLT1B|LTR|ERVL-MaLR	24774.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	3.98582822366442	4.10188598561998	4.03440830173978	4.54131248267841	3.62339962763991	4.00682555569523	3.96944149600669	3.71388826103718	-1.01820230997551	0.0311253981646807	0.171569326722203
Merged-chr18-10182229-4	chr18	10182110	10182310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009071)	promoter-TSS (NM_009071)	-418.0	NM_009071	19877.0	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	8.56703070430985	8.84142151694499	8.61537363511505	8.54731928126516	8.69790627536802	9.0012062434192	8.84032101055647	8.51905619540318	0.159885013845043	0.347680672775438	0.655546119710951
Merged-chr9-57524624-3	chr9	57524528	57524728	+	806.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007747, intron 1 of 4)	intron (NM_007747, intron 1 of 4)	3396.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	3.34172767154329	3.33477238716041	3.61344298365432	3.57090905951907	3.58120427433341	3.32707201470079	3.20559024966126	3.705206493325	-0.00410018725911425	0.993883724243333	0.997710343383017
Merged-chr4-119195340-4	chr4	119195233	119195433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024462)	promoter-TSS (NM_024462)	23.0	NM_024462	69216.0	Mm.36697	NM_024462	ENSMUSG00000028643	Svbp	2410005K17Rik|AI851162|Ccdc23	small vasohibin binding protein	protein-coding	7.42406769065383	7.51796347102903	7.01313102767442	7.32171982319835	7.64632818983349	7.52207512476359	7.65864002757677	7.60149213351804	0.365514534450449	0.0503884136851154	0.232913019069126
Merged-chr7-45923083-4	chr7	45922987	45923187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1661.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	8.06978228529601	8.55787431020628	8.35575276570512	7.91332646289368	8.41525689456147	8.46824762821962	8.25151577765955	7.96164581782296	0.0577183617420039	0.779680647065771	0.914094261477771
Merged-chr13-60666084-3	chr13	60665994	60666194	+	803.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	63883.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	3.73555850652332	4.44134344596841	3.83606517710033	3.68289504367185	3.65861733966892	3.49833737150864	3.36973251003811	3.3793097186347	-1.45668437289674	0.00819014374770096	0.0682268006257688
Merged-chr11-109621369-3	chr11	109621263	109621463	+	682.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9974.0	NM_145940	52639.0	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding	3.35499164216625	3.45525236290163	3.29920704900625	3.29485401428143	3.3222154530079	3.15532241666816	3.28706114821856	3.40731928264773	-0.189814248774753	0.717738677740904	0.887174113795603
Merged-chr6-115555782-4	chr6	115555674	115555874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199033, intron 4 of 11)	intron (NM_199033, intron 4 of 11)	11070.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	6.03181127270229	6.02083664463745	6.03287996185644	6.03075957285145	5.7839330685	5.62964079877257	5.35721798111406	6.04869929288856	-0.477621102403552	0.0735117066350158	0.292042369193175
Merged-chr6-86660750-4	chr6	86660640	86660840	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010751, intron 3 of 5)	intron (NM_010751, intron 3 of 5)	8419.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	4.91905087386237	5.04404514525524	4.99497209309532	5.38648312549911	5.03956626817571	5.24077167626754	5.31717277980752	5.36759003332611	0.219166456640512	0.495620864443075	0.765874409085869
Merged-chr9-100400559-4	chr9	100400473	100400673	+	975.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85900.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	5.58370912485398	4.79488126144345	5.28738431467169	5.13711840750904	5.59440482255941	5.30195111943486	5.06537556943298	5.53169160110304	0.313033003600356	0.348386623014721	0.656235052875883
Merged-chr7-92874393-6	chr7	92874222	92874422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028243)	promoter-TSS (NM_028243)	-75.0	NM_001080995	74041.0	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	7.61817337833209	7.53688490244073	7.96371121209462	7.37556173114409	7.27328825156161	7.39250509615146	7.62342055240418	7.32095930176661	-0.299911350978268	0.143801193244576	0.422314029539782
Merged-chr5-66106140-4	chr5	66106024	66106224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-7945.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	6.79721470523556	6.63738154929635	6.57446650434827	6.24260843496668	6.92324696507779	7.00112419050389	6.57297989404829	6.64888942544417	0.341432430876142	0.144953340883386	0.424140173096216
Merged-chr15-68257629-2	chr15	68257529	68257729	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152182, intron 1 of 13)	intron (NR_152182, intron 1 of 13)	1227.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	3.49395673440247	3.32317402140227	3.60496270641141	3.73907854911531	3.71776248450157	3.55014466039339	3.91154458903081	3.37208714627075	0.303669520633178	0.558854768409678	0.803410899795795
Merged-chr2-167698118-4	chr2	167698002	167698202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_110334)	TTS (NR_110334)	6925.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	7.8673008052071	7.89829796672892	7.84615892433287	8.0719523131348	7.78102319324576	7.95378962246955	7.80824043583551	8.11736649451291	-0.0166861735742469	0.922994082070376	0.971488790221253
Merged-chr13-41467316-4	chr13	41467214	41467414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	20046.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	6.87411666484165	7.08043402010279	6.83346569445018	7.14241907819162	6.95967474740446	7.05217663035966	7.16380843067559	6.67827531670018	-0.0346982512174794	0.868424207980906	0.950742877146131
Merged-chr14-73445677-4	chr14	73445594	73445794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60405.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	7.24925141840862	7.69068158481832	7.48331105095775	7.07736974231215	7.2946275003614	6.92454994213076	7.24565801250508	6.55251341640118	-0.471669055979623	0.0550826058000874	0.245290590480757
Merged-chr10-127420793-4	chr10	127420707	127420907	+	965.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168293)	promoter-TSS (NM_001168293)	-60.0	NM_027900	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	5.71766052034176	6.36474542793309	4.94216943476011	4.61519751634279	5.85355616694926	6.00986510308308	5.63974311736112	5.50339777123403	0.254671912959704	0.697102544123637	0.877616955442619
Merged-chr13-43549497-4	chr13	43549313	43549513	+	926.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081059, intron 5 of 8)	intron (NM_001081059, intron 5 of 8)	10778.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	4.56883057908114	4.52101138923839	4.03896650127156	4.37787140126805	4.59236974322771	4.46020179432923	3.7880330600899	4.23845589983322	-0.190368227227578	0.67361224243323	0.865848986388019
Merged-chr19-32304270-3	chr19	32304194	32304394	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	45022.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	4.63206112709831	4.39048878426368	4.59893103473948	4.42213630088132	3.79694438415422	4.0026915149018	4.03053326918503	4.14651803382962	-1.32214223978416	0.00147548726668661	0.0184122910511021
Merged-chr8-25598948-4	chr8	25598830	25599030	+	891.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1443.0	NM_173012	270035.0	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	4.4663553832001	4.57912807331789	4.28842644704768	4.6347973682836	4.75625668435413	4.31552388938745	4.40489656768025	4.37813362259669	-0.0444085838396028	0.908285218218755	0.966035007914717
Merged-chr11-117712309-4	chr11	117712219	117712419	+	928.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 3 of 21)	intron (NM_198022, intron 3 of 21)	58030.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	4.64565256121065	4.37461100479083	4.45268228753139	4.317847276283	4.51665630662093	4.40113345441653	4.39034889703842	4.5308172472981	0.0529249335065728	0.885983433242158	0.957204455938164
Merged-chr15-89356573-4	chr15	89356470	89356670	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178919)	promoter-TSS (NM_178919)	851.0	NM_001271601	52683.0	Mm.143167	NM_001115132	ENSMUSG00000008690	Ncaph2	-	non-SMC condensin II complex, subunit H2	protein-coding	4.76637056649531	4.89292165168105	4.76713327969687	4.85959258018045	5.52998811833886	5.20282486210241	5.0378417066429	5.12341263026934	0.810311748063539	0.0112142918992951	0.085591044724418
Merged-chr2-153338918-3	chr2	153338818	153339018	+	929.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6892.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	3.78504989359629	3.59149188392345	3.49603462574523	3.75325722427333	3.36034791184474	3.49432857361419	3.42754748404899	3.19133868735913	-1.01966245110929	0.0496890258501755	0.230802347362937
Merged-chr14-31183125-4	chr14	31183028	31183228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347583)	TTS (NM_001347583)	-14487.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	6.14514216299977	6.1007532819182	6.60460071712813	6.3291727121994	6.25673993456905	6.02614057150922	6.28601672560139	6.01256256460405	-0.23048967127135	0.346565208374342	0.654753888817761
Merged-chr10-112138775-4	chr10	112138668	112138868	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR46A2|LTR|ERVK	-24853.0	NM_001310675	353025.0	Mm.194428	NM_178278	ENSMUSG00000035694	Caps2	D630005B03Rik	calcyphosphine 2	protein-coding	5.32975323630957	5.44836197333974	5.6020895124929	5.3021485034889	5.38749821590227	5.59174237955488	5.24269888821571	5.13123320219111	-0.121181611661489	0.678672016826674	0.8681208945003
Merged-chr6-72022116-3	chr6	72022012	72022212	+	842.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046180, intron 1 of 2)	Lx3_Mus|LINE|L1	20416.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	3.1658742170322	3.48185590626337	3.16623600336387	2.71052862734579	3.81576567812868	3.75675452111937	3.75627840725349	3.41882257009103	1.87103038723127	0.00198107668464779	0.0232231649104982
Merged-chr7-16048919-3	chr7	16048839	16049039	+	871.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22906.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	3.80092191199533	3.21554727448323	3.80153008246682	3.38454447437946	3.32557467375991	3.49972867757238	3.43072075542077	3.70682051996779	-0.235080512160846	0.666068993290504	0.861861238586864
Merged-chr19-5017029-4	chr19	5016929	5017129	+	944.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6977.0	NM_007854	13340.0	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	5.6538428664325	6.07527483274859	5.31702812286377	4.65482088435602	5.88508332048789	5.77963509951175	5.57564098619911	4.98644453500343	0.124940963940981	0.759965614609328	0.905851390428209
Merged-chr1-166793280-3	chr1	166793178	166793378	+	577.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-111433.0	NM_001347135	240894.0	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding	3.28207402413119	3.10931778417474	3.0598580759769	3.36273389061654	2.81040144351429	2.89715101173552	3.04906376287826	3.11765628769267	-1.02750678369038	0.0892378180920186	0.325970371239443
Merged-chr6-54679360-3	chr6	54679243	54679443	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-2281.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	6.67481348269472	6.60368154615089	6.80218354173396	7.04773662709322	3.98614143893887	4.23108793665394	4.20500270180724	4.29036954450008	-5.91677116163973	2.31368708306447e-28	2.22548557953306e-25
Merged-chr15-79343015-4	chr15	79342930	79343130	+	922.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3591.0	NM_001304830	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	3.77840499793156	4.16584606652494	4.00156306949186	3.62420299860418	4.39693939515276	4.0189063203446	4.33703940532027	4.46625174580162	1.08829034589981	0.013067138732921	0.0953465779467538
Merged-chr12-36029500-4	chr12	36029439	36029639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	12939.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	6.22701200505432	6.49284399605916	5.98046557936185	6.47807352794687	6.15496255936804	5.56746409834127	5.97239817868552	6.10598430298158	-0.526719596099291	0.0490067016919947	0.228888722220379
Merged-chr12-33017009-4	chr12	33016892	33017092	+	913.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58B|DNA|hAT-Charlie	62806.0	NM_198710	19027.0	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding	3.94871430895545	3.75332645022016	4.136732087931	4.03977042024021	4.18823134551144	3.9085683747362	3.9329655495327	4.21824814313431	0.255590968779778	0.554681278950539	0.80100411386447
Merged-chr8-106820756-3	chr8	106820649	106820849	+	941.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173037, intron 17 of 17)	B3A|SINE|B2	-49493.0	NM_008217	15118.0	Mm.56986	NM_008217	ENSMUSG00000031910	Has3	-	hyaluronan synthase 3	protein-coding	3.18566842842138	3.08815470525634	3.26966924733513	2.71836575849135	5.03325831249823	4.30359217409506	4.38427693238245	4.54387092423496	5.35454752712246	1.49611297644478e-17	3.64698032706721e-15
Merged-chr16-96128021-4	chr16	96127880	96128080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008251)	promoter-TSS (NM_008251)	-255.0	NM_008251	15312.0	Mm.2756	NM_008251	ENSMUSG00000040681	Hmgn1	HMG-14|Hmg14	high mobility group nucleosomal binding domain 1	protein-coding	6.99188645204522	7.03977602946282	7.69079530099729	7.10696064714874	7.05014362121605	7.26992665653951	7.14917863435046	6.90784802108874	-0.185569799653681	0.417087667867353	0.710865673230619
Merged-chr1-95355385-4	chr1	95355279	95355479	+	795.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	41751.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	3.96289619948389	3.8618084718584	4.01473308846154	4.49582148575542	4.2055110900914	4.23594618316734	3.99814067038534	4.15484890470839	0.0519251718290795	0.908760068676424	0.966100563913989
Merged-chr17-13867130-4	chr17	13867044	13867244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 22 of 33)	intron (NR_151731, intron 22 of 33)	-81229.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	6.52197064462791	6.00642673196174	6.55333816093329	6.72674053380666	5.83425278267328	6.15423727308347	6.0139432956509	6.08446838614734	-0.711420504287591	0.00620118024254574	0.0555981620461221
Merged-chr13-114954697-4	chr13	114954608	114954808	+	868.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22608.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	4.5687924334237	4.15852919985661	4.20733201990005	4.49995004138545	4.15434812137394	4.07408122219591	4.14220831224389	4.33723376429621	-0.48390302590272	0.232431559626249	0.542025553931029
Merged-chr11-114725197-4	chr11	114725082	114725282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2230.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	5.78713366551701	6.60742164245427	5.76253768420746	5.3732309981317	6.13805363648057	6.4247313032361	5.53933590443745	5.85787301506647	0.10026616975389	0.780134454384398	0.914348108890036
Merged-chr6-47175019-4	chr6	47174960	47175160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 20 of 23)	intron (NM_001004357, intron 20 of 23)	-69336.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	6.00923955596654	5.62667801404391	5.9706051442563	4.96632709373166	5.60075370282235	5.77399053886081	5.36511432548243	5.96629481041793	-0.000498867101896288	0.998856945132613	0.999476023480276
Merged-chr9-109082454-4	chr9	109082342	109082542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025689)	promoter-TSS (NM_025689)	-54.0	NM_025689	66658.0	Mm.128227	NM_025689	ENSMUSG00000025645	Ccdc51	5730568A12Rik|AI551049	coiled-coil domain containing 51	protein-coding	6.55371954375768	6.24446058591257	6.0950598416473	6.34863543227212	6.5438559854176	6.41803011816019	6.40916340201517	6.38593187757134	0.182781705857727	0.415080494443491	0.709483500243191
Merged-chr14-70778205-4	chr14	70778064	70778264	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010071, exon 5 of 5)	3' UTR (NM_010071, exon 5 of 5)	3783.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	5.86329724773726	5.32508081817549	5.68613958663963	5.66965339059344	5.36949042026571	5.44141889858978	5.65717905881937	5.08148268916065	-0.423106978661547	0.156869943998021	0.443018796374986
Merged-chr10-20772243-4	chr10	20772109	20772309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47131.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	6.68659809481647	6.66341624142457	6.39921650224758	6.64187626878374	6.63793929709434	6.53939718075091	6.27350336539626	6.20037430985698	-0.251235761330876	0.268679621042371	0.580317000339097
Merged-chr2-119288636-4	chr2	119288544	119288744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172269)	promoter-TSS (NM_172269)	-98.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	7.63447778272449	8.08372637244587	7.94655120859723	7.82951563234706	7.90538249978575	7.80376904717936	7.79325919614309	7.84086072468725	-0.0592275009764159	0.733894276018653	0.894686779360896
Merged-chr9-26783631-3	chr9	26783526	26783726	+	963.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153803, intron 6 of 19)	Lx8|LINE|L1	22842.0	NM_001310768	244757.0	Mm.293696	NM_153803	ENSMUSG00000036395	Glb1l2	-	galactosidase, beta 1-like 2	protein-coding	4.72099353762954	4.06886099502797	4.61712198068176	4.69945456422399	3.94017273071325	4.31725665726015	4.69845267896349	4.13468665525614	-0.589465944470924	0.186565318176231	0.484582803058514
Merged-chr8-48011874-3	chr8	48011774	48011974	+	932.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-21323.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	3.48073686298224	3.69003915536888	4.01725638967392	3.85626007974469	3.4155043124996	3.59701366950734	3.52705005922138	3.64901685337054	-0.737268818253792	0.139128207418966	0.414750876403007
Merged-chr11-115613473-4	chr11	115613425	115613625	+	947.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243584)	promoter-TSS (NM_001243584)	-556.0	NM_001243587	69674.0	Mm.390387	NM_027162	ENSMUSG00000020743	Mif4gd	1110014L05Rik|2310075G12Rik	MIF4G domain containing	protein-coding	4.20550389540802	4.06723050774844	4.24763477150423	3.88557339271961	4.17062761437299	3.9920192143695	3.90826264176088	3.97331137079625	-0.1953125743111	0.64996902655916	0.853021044216188
Merged-chr1-80772696-3	chr1	80772598	80772798	+	848.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-14145.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	2.87958259334079	2.72352450630668	2.879986935257	2.83463064746736	2.53441163541533	2.59508753433864	2.55855650984194	2.69929698156467	-1.21226783741831	0.0707325045755427	0.285137279446257
Merged-chr4-136056192-4	chr4	136056085	136056285	+	835.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4-int|LTR|ERVK	-2814.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	4.36898393953611	4.34123970446172	3.80080485535869	4.13618022626051	4.18841824529989	4.03679049570268	4.05161482151728	4.06644442505713	-0.226826400966195	0.596888795997865	0.824985875654518
Merged-chr11-3863944-4	chr11	3863833	3864033	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152818)	promoter-TSS (NM_152818)	-30.0	NM_152818	74309.0	Mm.61022	NM_152818	ENSMUSG00000020435	Osbp2	1700095P05Rik|C630001G20Rik|Gm244|ORP-4|OSBPL1	oxysterol binding protein 2	protein-coding	5.30985038141111	4.89707144498735	5.16050527483996	5.37557860687746	5.10098239058741	4.97312763473619	5.10316226829667	5.3070596740684	-0.1535100887085	0.626279052137183	0.840379237478982
Merged-chr3-144048053-4	chr3	144047941	144048141	+	953.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	154291.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	5.66224232228765	5.93540273447453	5.12875959726592	4.7487671288257	5.62004022259965	6.07725673537503	5.33658867066083	5.12524955062345	0.239273215094725	0.548377798953979	0.797382448842745
Merged-chr15-96285140-2	chr15	96285040	96285240	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2382.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	5.43647804148856	5.29376938994373	5.99206075545348	5.31019983646121	5.57323035195981	5.78243261128317	5.5787576069369	5.9877435148881	0.35299058113312	0.249138209154827	0.560302603581264
Merged-chr17-53566911-4	chr17	53566811	53567011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020005)	promoter-TSS (NM_020005)	-60.0	NM_020005	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	7.50652302171916	7.43309023698131	7.67002339038599	7.65921452239327	7.424791033923	7.44472789558403	7.19759958816751	7.29492303024393	-0.304103563784351	0.090378302998779	0.328316690269985
Merged-chr2-71814199-4	chr2	71814091	71814291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008397, intron 1 of 25)	intron (NM_008397, intron 1 of 25)	27252.0	NM_001277970	16403.0	Mm.225096	NM_008397	ENSMUSG00000027111	Itga6	5033401O05Rik|AI115430|Cd49f|VLA-6	integrin alpha 6	protein-coding	5.639473145583	5.44725330968996	5.87527423478917	5.5411338812908	5.60476244114771	5.430804404154	5.88705032428193	5.66200928117425	0.0520594758191252	0.850802203968776	0.943736204490378
Merged-chr4-63389482-3	chr4	63389383	63389583	+	895.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 4 of 21)	intron (NM_001045514, intron 4 of 21)	8757.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	3.82244010827637	3.85513840138395	4.18848110760292	3.71727487122278	4.18130133447469	3.64562127780925	4.00107577930874	3.82081738168154	0.108263055113761	0.818416497075928	0.93038295314659
Merged-chr9-40391599-3	chr9	40391518	40391718	+	661.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	-15201.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	3.46951916327916	3.44840323478935	3.28388208125467	3.91682540854515	3.3853597434897	3.52543848637934	3.88844986129648	3.52468533167459	0.0792630499775495	0.886500203059131	0.957444179369024
Merged-chr2-132266333-4	chr2	132266243	132266443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	3195.0	NM_138651	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	7.21146570855105	7.10979565220405	7.35805693328595	7.45286386036575	7.07064876120607	6.97761719143073	7.2716261090834	7.22948354845739	-0.211607146306995	0.275304820394907	0.58708236946753
Merged-chr7-145284015-4	chr7	145283928	145284128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132642)	promoter-TSS (NR_132642)	-17.0	NR_132642	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	7.50513349927086	7.55432589530507	7.71570418933157	7.66102399939404	7.83543110035874	7.81857119357095	7.89100537431692	7.36089725110039	0.173324308239539	0.358753184204271	0.664705867104326
Merged-chr1-120033251-4	chr1	120033157	120033357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 4 of 13)	intron (NM_001012322, intron 4 of 13)	26277.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	5.33035221920579	4.97502095647589	4.85557503795894	5.23032598437384	5.21108790708253	5.35458356917164	5.30461878199101	5.2989077012039	0.311712731022055	0.307169354776836	0.619358168218558
Merged-chr5-142702109-2	chr5	142702009	142702209	+	842.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146257)	promoter-TSS (NM_146257)	8.0	NM_146257	243328.0	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	3.05333334226536	3.06934168141165	2.88005700142066	2.56185208766027	2.95793304253861	2.78622213344258	2.67226777393091	2.87859908641694	-0.317523380533957	0.634855327078442	0.845479958203761
Merged-chr1-177681396-4	chr1	177681301	177681501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38458.0	NR_037994	75589.0	Mm.86666	NR_037994	ENSMUSG00000101746	2310043L19Rik	-	RIKEN cDNA 2310043L19 gene	ncRNA	7.07970617322111	7.55810494550944	6.99251272934236	7.09045286328843	7.14620890027229	7.36302411673843	7.28756954961152	7.03883950034115	0.0154885237338151	0.941799161476361	0.97898049638905
Merged-chr1-185203300-4	chr1	185203213	185203413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163754)	promoter-TSS (NM_001163754)	-855.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	5.24022636423931	5.15288563564641	5.30806198413695	5.39800559117114	5.77236555010772	5.72069906591936	5.69326040218774	6.02917465531865	0.885651807481888	0.00123841307700716	0.0159690225377342
Merged-chr10-30408888-4	chr10	30408787	30408987	+	899.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	191813.0	NM_028604	73681.0	Mm.294503	NM_028604	ENSMUSG00000019792	Trmt11	2410075D05Rik|3110045I18Rik|AW213713	tRNA methyltransferase 11	protein-coding	4.22400684433149	4.48902373685354	4.31732260823705	4.65363235009518	4.39216602976373	4.08305724976797	4.29833541505845	4.52033920550763	-0.259958826254847	0.51614267463844	0.778006346996534
Merged-chr14-60912030-4	chr14	60911935	60912135	+	835.575012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125952.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	4.20878780753608	3.7292976963837	3.81445693093703	4.11068722388706	3.93203119173958	3.93651927206092	4.45421836679411	4.28891512015482	0.475176628507128	0.299347775993752	0.611562066856898
Merged-chr16-24860496-4	chr16	24860405	24860605	+	937.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 9 of 12)	intron (NM_178665, intron 9 of 12)	138650.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	4.45751899655763	4.42016364866552	4.45821330161635	4.52865903889941	4.3912762785501	4.58899020102406	4.5211300455979	4.92075397828802	0.317384600010215	0.390322147556073	0.690486475663661
Merged-chr3-121841663-4	chr3	121841539	121841739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26337.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	7.41997594867484	7.40165241522458	7.41127890697121	7.47963196886366	7.75176808942578	7.578308456835	7.69086799207053	7.75381455448462	0.353146778554206	0.0342156958117996	0.18270360181456
Merged-chr1-183668041-3	chr1	183667955	183668155	+	746.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80922.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	3.78907178811127	3.46148812463641	3.64989441695764	3.74181968995428	3.13592036303223	3.49094671994796	3.36420773258817	3.43397671922758	-1.07948813041577	0.0405243664303664	0.203433519863675
Merged-chr11-100527998-4	chr11	100527889	100528089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199296)	promoter-TSS (NM_001199296)	11.0	NM_134037	104112.0	Mm.282039	NM_134037	ENSMUSG00000020917	Acly	A730098H14Rik|AW538652	ATP citrate lyase	protein-coding	7.98235654503799	7.88563010156184	7.64880271953022	7.57484364008201	7.98620093559352	7.92685750456702	7.99752949897809	7.71148879714015	0.176800584932577	0.332650654717227	0.643569383856011
Merged-chr16-22657077-4	chr16	22656971	22657171	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_138650, exon 1 of 25)	5' UTR (NM_138650, exon 1 of 25)	160.0	NM_138650	110197.0	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	5.96860448588823	6.00954426545666	6.27651017186717	6.06993464570067	5.51727985733203	5.48327733289886	6.00229430956664	6.02890550647719	-0.49069374462824	0.0717386081083714	0.287710298994014
Merged-chr19-29496966-4	chr19	29496919	29497119	+	786.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	24968.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	3.07565791968907	3.07751590564384	3.13562695838308	3.40038519713918	2.82424129514768	3.05635493820584	2.93904696512952	3.34744958124372	-0.536649568637814	0.382953616408799	0.684806264846199
Merged-chr2-31052631-4	chr2	31052531	31052731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019406)	TTS (NM_019406)	43869.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	7.12699668780919	7.31811930092458	7.22696343220156	7.20664949100235	6.90227646087146	6.92115800060261	6.90895777468428	6.9390036353991	-0.421405187608577	0.0214907924788067	0.134277836889833
Merged-chr9-62844982-3	chr9	62844883	62845083	+	765.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033175, intron 2 of 6)	intron (NM_001033175, intron 2 of 6)	6196.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	3.41024603119747	3.18544915050801	3.51802399888044	3.40889197697697	3.1749194846882	3.20789918356816	3.64704950723596	3.61473920079911	0.14254571847796	0.794651630959024	0.920584812443453
Merged-chr2-16170586-4	chr2	16170476	16170676	+	961.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 35 of 38)	intron (NM_001310455, intron 35 of 38)	-185728.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	4.86171735768316	4.75690902272154	4.77984335745804	5.58577352747634	5.28214687546476	5.04111600178761	5.40721613368278	5.32443489303649	0.361344989550929	0.336001653100636	0.646175879878151
Merged-chr12-71294863-3	chr12	71294759	71294959	+	997.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15025.0	NM_021532	59036.0	Mm.46662	NM_021532	ENSMUSG00000044548	Dact1	4921528D17Rik|AI115603|DAPPER|DAPPER1|FRODO|Frd1|Frodo1|MDpr1|MTNG3|THYEX3	dishevelled-binding antagonist of beta-catenin 1	protein-coding	4.44009571633185	4.40952510363251	4.58766398501244	4.85307135279391	3.70966051083248	3.98644032209087	3.72188420828015	4.13179088374034	-1.83331366948315	3.99291530617855e-05	0.000930926035304562
Merged-chr13-111798184-4	chr13	111798117	111798317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	10776.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	5.98173503187859	5.53986241346069	5.6959511638588	5.90439835686941	5.72671962888536	5.32867194083757	5.6168218479842	5.38507458113688	-0.435749598822851	0.123092517174991	0.389007542303628
Merged-chr11-29887431-2	chr11	29887331	29887531	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 5 of 41)	L1_Mus2|LINE|L1	-61763.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	3.16833410579663	2.79437422699737	3.00934887248453	2.64872170285902	2.9681800597093	2.93570397955445	2.68245482002693	2.7590486393708	-0.306067018184161	0.642147103188796	0.849011602977103
Merged-chr2-61137654-3	chr2	61137547	61137747	+	955.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-162496.0	NR_045335	100038493.0	Mm.388076	NR_045335	ENSMUSG00000075325	Gm13582	-	predicted gene 13582	ncRNA	4.11128216254408	4.14105575632418	4.44284120824391	4.64165108078929	3.65380441228631	3.78802675612628	4.04635422688001	4.10938996309989	-1.20722356920031	0.00867036601304886	0.0712230793355805
Merged-chr12-113154182-4	chr12	113154095	113154295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007763)	TTS (NM_007763)	2183.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	5.99517454683946	6.07081883110432	6.12182693248328	6.24307201989399	5.761525998969	5.82294069104232	6.00864427095917	6.33600973293677	-0.192659308539468	0.453568691412531	0.737595747910727
Merged-chr2-150914364-3	chr2	150914286	150914486	+	881.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 2 of 6)	intron (NM_027014, intron 2 of 6)	4792.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	3.15570220297388	3.16547602530332	3.09001200204835	3.15811995888682	3.41822081654784	3.39304667525322	3.26678772761933	3.71898995878565	1.12684442113904	0.0348397631533971	0.184774569815636
Merged-chr12-111443324-2	chr12	111443224	111443424	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009396, intron 1 of 11)	intron (NM_009396, intron 1 of 11)	663.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	5.68572366994475	6.7215878993284	6.08610972330889	5.45045753031213	6.57792352345622	6.90237218522282	6.0331184321039	5.92204790021594	0.500425521043416	0.352430364588182	0.659568292805988
Merged-chr17-43036306-4	chr17	43036227	43036427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 1 of 5)	intron (NM_178589, intron 1 of 5)	19772.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	5.80196154567597	5.84402484805345	6.04183301579893	6.49393441834118	5.4406710148529	5.46126502905413	5.6221385542354	5.59174030898337	-0.93145365883423	0.00136652484503226	0.0173321225845601
Merged-chr17-56717762-4	chr17	56717656	56717856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178926)	promoter-TSS (NM_178926)	-6.0	NM_027244	69875.0	Mm.279823	NM_027244	ENSMUSG00000002379	Ndufa11	2010012C24Rik|AV006275|B14.7	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11	protein-coding	5.53909673771581	5.58997279078119	5.25087968421477	5.43692017742277	5.87234129233261	5.9743619663188	6.02287133237312	6.08742943890416	0.865599727674038	0.000744375924520752	0.0106329387781382
Merged-chr6-40818664-3	chr6	40818571	40818771	+	906.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68823.0	NM_139296	194357.0	Mm.207087	NM_139296	ENSMUSG00000029885	Moxd2	Dbhl1	monooxygenase, DBH-like 2	protein-coding	3.88515611300178	3.58820517353323	3.77084531312109	4.39188988084481	4.34685536921452	4.16570891940401	4.16129079419569	4.34155786392805	0.731464162298257	0.138517673023862	0.414034419137721
Merged-chr8-124863094-4	chr8	124862981	124863181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025615)	promoter-TSS (NM_025615)	48.0	NM_010322	14712.0	Mm.29114	NM_010322	ENSMUSG00000031985	Gnpat	AU019525|D1Ertd819e|DHAPAT	glyceronephosphate O-acyltransferase	protein-coding	7.43558233128887	7.60045374075347	7.29660214801203	7.30441043028261	7.35428027159721	7.27963536395302	7.35187213813168	7.25932114453164	-0.131499862047185	0.468219465636515	0.747569443138141
Merged-chr5-150598988-4	chr5	150598888	150599088	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001362416)	TTS (NM_001362416)	-4463.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	4.66710141429045	4.98736693932354	4.78747310173211	4.51984437976092	4.90710927066523	5.26056839054134	4.72649762083298	4.82178154044967	0.406804523202096	0.248024283746079	0.559137354284593
Merged-chr4-119108984-8	chr4	119108923	119109123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 1 of 9)	CpG	278.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	5.85197266468563	5.85130951452287	5.94939765313283	6.00500336772019	6.44210404104071	6.25707323327777	6.09132221934752	6.35694435089855	0.579675441093099	0.0136586914147834	0.0982925888396386
Merged-chr11-69586074-4	chr11	69585950	69586150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127233, intron 1 of 10)	intron (NM_001127233, intron 1 of 10)	5691.0	NM_001127233	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	7.0858303447105	6.99978258631981	6.36595521269324	6.73742408807501	6.68384058345351	7.01672765217407	6.84573299034217	6.75100831637846	0.000867061300680818	0.997035339668713	0.998845579764664
Merged-chr9-108694280-4	chr9	108694214	108694414	+	940.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008924, intron 1 of 10)	L1M4|LINE|L1	2171.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	4.52561162298697	4.43452555439873	4.74273489345218	4.51166672662278	4.47029739084197	3.93431748606511	4.46567655288113	4.44223363021452	-0.461200578981147	0.246404544485956	0.557673692994975
Merged-chr14-50785524-4	chr14	50785403	50785603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177625)	promoter-TSS (NM_177625)	17.0	NM_177625	219022.0	Mm.276362	NM_177625	ENSMUSG00000006288	Ttc5	-	tetratricopeptide repeat domain 5	protein-coding	6.66958757588724	6.5827406466376	6.35982528712984	6.32578484182669	6.72558872405634	6.57296409462203	6.60752869640401	6.13280111898185	0.0741696504020475	0.755327438276978	0.903663362116431
Merged-chr19-47067673-4	chr19	47067545	47067745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177342)	promoter-TSS (NM_177342)	-103.0	NM_177342	226182.0	Mm.301522	NM_177342	ENSMUSG00000025049	Taf5	6330528C20Rik|AV117817	TATA-box binding protein associated factor 5	protein-coding	6.43925411339419	6.16398502775186	6.19179364944425	5.88108672437545	6.20058293575679	6.73672491595318	5.72116264138182	6.10631293193539	0.0999133504823684	0.733755894933598	0.894646551297515
Merged-chr16-91373590-1	chr16	91373490	91373690	+	741.333313	f0_balb.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	807.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	3.69411773286877	3.84832565544385	4.06220541917319	3.66141227850301	3.51971378211484	3.37172064297933	3.73125261113998	3.84294953720783	-0.585659673794453	0.240718149436176	0.551321249074462
Merged-chr9-48492098-4	chr9	48491993	48492193	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144948, intron 3 of 4)	intron (NM_144948, intron 3 of 4)	3237.0	NM_001326355	67010.0	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	5.34491743230198	5.83030242605014	5.3162112005918	4.57724395609069	5.51494660757656	5.54920590380915	4.95106141794831	5.18667730994941	-0.0245119470462439	0.950143840883217	0.982204611275017
Merged-chr2-34771256-3	chr2	34771215	34771415	+	998.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022310)	promoter-TSS (NM_022310)	-775.0	NM_001163434	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	4.67961789943119	5.06285041726852	4.7568431451413	4.27683315417487	4.84630077440587	4.81511498667205	4.44694248378467	4.79019775842205	0.0486299604037739	0.90075506653625	0.963206010470881
Merged-chr5-107967056-4	chr5	107966948	107967148	+	865.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	20029.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	4.31212770384267	4.47285217640596	4.39676986811587	4.51629276013572	4.09215748081791	3.90730318368648	4.33570385573882	4.31009565962559	-0.640665085393012	0.110175734956766	0.366573710612399
Merged-chr3-96102216-4	chr3	96102140	96102340	+	919.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2287.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	4.15900148681512	4.11969001886922	4.57034561138515	4.4483254923319	4.1783014913315	3.89006042903721	4.43953578398103	4.33743214117446	-0.277527002616643	0.512183272180201	0.775701492755237
Merged-chr5-100639134-4	chr5	100639024	100639224	+	993.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35132.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	5.14444701277992	4.52884485038436	5.20834232422412	4.6970842442936	5.52480159162949	5.35139635846259	5.11982926002052	5.40315398382379	0.852394339472232	0.0118777086430344	0.0892476959255303
Merged-chr3-61413410-4	chr3	61413278	61413478	+	817.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48871.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	3.78133323433538	3.94442896315504	4.07351694595289	3.95669529596067	3.74114978508754	3.90097829855684	4.1377450794618	3.8330207100814	-0.104063006405979	0.814364779045913	0.928327532350968
Merged-chr19-37963106-4	chr19	37962986	37963186	+	906.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 19 of 53)	L1MB3|LINE|L1	80491.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	3.83665967764553	3.64493975464644	3.89442130251889	3.80438217855119	4.40128474640254	4.60591434724948	4.52075931137914	4.09924457502184	1.58814930240034	0.000169814949945649	0.00317500875287139
Merged-chr2-121885668-4	chr2	121885559	121885759	+	916.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205371, intron 1 of 9)	(A)n|Simple_repeat|Simple_repeat	17954.0	NM_001205371	319996.0	Mm.292109	NM_177054	ENSMUSG00000060227	Casc4	D130060C09Rik|VGFG2573	cancer susceptibility candidate 4	protein-coding	4.6976159076313	4.93928921746032	5.07016938271401	4.96394659467981	4.37180400604937	4.46991896698125	4.5105231691352	4.9112897937176	-0.742292438750992	0.0404134342603093	0.203105827664658
Merged-chr16-15985025-3	chr16	15984920	15985120	+	789.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 7 of 18)	intron (NM_001355731, intron 7 of 18)	97734.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	3.32414444808859	3.35386682716485	3.26571815016594	3.26333301715547	3.45744010524468	3.4370165815864	3.36787863804229	3.37910817252428	0.401089717122655	0.427090011932925	0.718329235229673
Merged-chr11-50931611-4	chr11	50931463	50931663	+	962.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013744)	promoter-TSS (NM_013744)	72.0	NM_013744	27274.0	Mm.74670	NM_013744	ENSMUSG00000020335	Zfp354b	Kid2|Tcf17l1|Znf354b	zinc finger protein 354B	protein-coding	5.12359378661124	5.01959176723528	5.12447628530652	5.01190141407521	4.49558516170912	4.99657374549984	4.72154870748973	4.69963030555892	-0.689336455409125	0.0395659760707135	0.200317704725607
Merged-chr5-64093501-3	chr5	64093437	64093637	+	964.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025700, intron 1 of 13)	intron (NM_025700, intron 1 of 13)	598.0	NM_001356964	66681.0	Mm.2325	NM_025700	ENSMUSG00000029171	Pgm1	3230402E02Rik|Pgm-1|Pgm2	phosphoglucomutase 1	protein-coding	3.96985517139833	3.63125603582021	3.77266138172474	4.06283458358045	3.33385336904436	3.78091886441356	3.95272125458775	4.13884826891104	-0.122206166082564	0.814052849162839	0.928224204641832
Merged-chr13-31347314-4	chr13	31347208	31347408	+	861.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-106222.0	NR_045957	73924.0	Mm.417825	NR_045957	ENSMUSG00000087460	4930401O12Rik	-	RIKEN cDNA 4930401O12 gene	ncRNA	4.48492824450679	4.25657096523521	4.77611423944688	4.92923485897009	4.16820866636747	4.1803061755859	4.19619149413877	4.52287356060822	-0.872959171315668	0.0348693115656207	0.184862410839365
Merged-chr11-47020177-3	chr11	47020075	47020275	+	920.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 6 of 7)	intron (NM_011891, intron 6 of 7)	209376.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	3.62878443081678	3.18384819550461	3.81887162797228	3.73331748411087	3.44513788131044	3.52149173404702	3.66369964282146	3.40492205443704	-0.336364545907405	0.527452043559905	0.784362457088697
Merged-chr4-133109388-4	chr4	133109262	133109462	+	888.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21271.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	5.82421929706805	6.03817001232902	5.8053235988172	5.79915854527226	4.41542441785966	4.57128252202081	4.23101994031574	4.58733421169693	-2.80484495850902	7.29931578971224e-16	1.35301562134356e-13
Merged-chr15-90618149-3	chr15	90618050	90618250	+	638.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357979, intron 4 of 18)	intron (NM_001357979, intron 4 of 18)	61238.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	3.17113636991353	3.06207664304829	3.56993980683024	3.37125222851662	3.00867473346056	3.09247091592438	2.9057084146235	3.04751325340755	-1.18303019236508	0.0483186816803663	0.226925009456769
Merged-chr7-63755009-3	chr7	63754929	63755129	+	761.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130880, intron 13 of 13)	intron (NM_130880, intron 13 of 13)	-161828.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	2.9916958806925	2.77672336236755	2.93392168462389	2.59783080354693	2.92067205155848	2.70321899821611	2.66388087929142	3.19920193028343	0.277354877728969	0.676789045952288	0.86728762362675
Merged-chr13-81691801-4	chr13	81691708	81691908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081176, intron 3 of 7)	intron (NM_001081176, intron 3 of 7)	19205.0	NM_001081176	67486.0	Mm.279781	NM_001081176	ENSMUSG00000035834	Polr3g	2310047G20Rik|AV275904|RPC32|RPC7	polymerase (RNA) III (DNA directed) polypeptide G	protein-coding	5.89235572919648	5.69698518582959	6.58510853915216	6.47577043975378	5.34865810777215	5.60766001488235	5.76788951195149	5.79341666911586	-0.940069994041293	0.0025423030548494	0.0281039818882328
Merged-chr8-40584820-4	chr8	40584727	40584927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040699, intron 6 of 13)	intron (NM_001040699, intron 6 of 13)	49965.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	6.47676433630233	6.69272637586764	6.84242593540438	7.03186013133378	7.13453900802769	6.7445133799727	6.96218406561076	7.01667535622619	0.260355644649743	0.241326156154193	0.55188287450279
Merged-chr6-31453766-3	chr6	31453700	31453900	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 8 of 17)	RSINE1|SINE|B4	54972.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	3.49643913013644	3.32228901216638	4.09470019946202	3.85569060402893	3.30295711591064	3.55360830563374	3.69650213072209	3.43523700215856	-0.715557748580195	0.193169813318127	0.493366613160536
Merged-chr5-5186291-4	chr5	5186218	5186418	+	994.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 5 of 14)	intron (NM_011074, intron 5 of 14)	79750.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	5.07622494798299	4.81820576649951	5.11026802748974	5.50837515704239	5.22041636400458	5.14738443124468	4.98396207982322	5.07363292014308	-0.116982284173747	0.72789951333506	0.891727642072153
Merged-chr17-21450355-4	chr17	21450256	21450456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308323)	promoter-TSS (NM_001308323)	-18.0	NM_001308323	22709.0	Mm.293030	NM_009558	ENSMUSG00000023892	Zfp51	Zfp-51|zfec12	zinc finger protein 51	protein-coding	7.51214555148943	7.76093774950134	7.46514160591361	7.85656283916558	7.93375254854176	7.8603947970711	8.32371688513003	7.71112764227261	0.406973844293911	0.0465762945131712	0.221878128798822
Merged-chr17-29389319-3	chr17	29389218	29389418	+	845.577759	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28404.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	3.26605244525285	3.52272948807997	4.04900759269538	3.30231672166727	4.11168824660866	3.78016171309576	4.22203462863206	3.71202729557771	1.18199307233145	0.0290497187044831	0.16386692585477
Merged-chr3-115694314-4	chr3	115694226	115694426	+	951.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20729.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	5.53858844629731	5.09104542456681	5.28699393907655	5.46107734581838	4.86030981894408	4.95653730211788	4.42906677317329	4.73149984531707	-1.16041789927717	0.000652362069638303	0.00954067798536773
Merged-chr1-150759715-1	chr1	150759615	150759815	+	727.0	f0_balb.idr	intron (NM_001024720, intron 15 of 106)	intron (NM_001024720, intron 15 of 106)	233720.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	3.06708168868224	2.74781398046852	3.06757092632092	2.89480834202835	2.46658709060961	2.53861284483984	2.58020222043985	2.58636401931485	-2.23583203656991	0.00257071592741208	0.0283208464629724
Merged-chr14-55540275-4	chr14	55540173	55540373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028994)	promoter-TSS (NM_028994)	7.0	NM_028994	74551.0	Mm.29856	NM_028994	ENSMUSG00000040618	Pck2	1810010O14Rik|9130022B02Rik|PEPCK-M	phosphoenolpyruvate carboxykinase 2 (mitochondrial)	protein-coding	7.54835397256884	7.60943335124395	7.5132372294378	7.73821148532155	7.33426060812762	7.4801360058064	7.68738613915581	7.46103822685715	-0.159529316855717	0.375503793292497	0.678478562795518
Merged-chr11-52368454-3	chr11	52368371	52368571	+	876.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011694, intron 1 of 8)	intron (NM_011694, intron 1 of 8)	7609.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	3.45730629802061	3.32473018325559	3.4055576198474	3.38934471267104	3.25653921492278	3.46492244208994	3.33800661838266	2.88887517086206	-0.512087210133817	0.369226000716613	0.673495400159084
Merged-chr4-142081924-4	chr4	142081806	142082006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-2392.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	7.22529123254595	7.33618639057456	7.11047982579554	7.11754178499806	7.44266127807397	7.45769667046837	7.40318244353151	7.31744125738398	0.283342318046043	0.111834440871952	0.369591590065217
Merged-chr8-106687669-2	chr8	106687576	106687776	+	591.5	f0_balb.idr|f1_balb.idr	intron (NM_173037, intron 1 of 17)	intron (NM_173037, intron 1 of 17)	4608.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	3.36926204213637	3.35191076042603	3.24884759521642	3.40021921076804	3.4451562959094	3.48313612036172	3.61415168304065	3.42432726223275	0.490692014583034	0.328109470677059	0.639516526008992
Merged-chr1-123934135-2	chr1	123934035	123934235	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_199021, intron 1 of 25)	intron (NM_199021, intron 1 of 25)	111424.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	6.63710662382307	6.64891148580783	6.7134582377897	6.78307975179878	6.77076292347324	6.70153875053257	6.58897517176888	6.55373610687511	-0.0595674881414525	0.768707098995415	0.90939721515425
Merged-chr10-20507276-4	chr10	20507172	20507372	+	931.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	41056.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	4.94242234603727	4.46800008620047	4.63205308067846	4.909758305226	4.52338524477291	4.50222200780311	4.68584210725748	4.32073951320538	-0.533632770806557	0.150978676170552	0.433992051980605
Merged-chr2-174329191-5	chr2	174329087	174329287	+	994.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077510)	promoter-TSS (NM_001077510)	-883.0	NM_201616	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	5.29433320041374	5.27212637442524	5.48392860233535	4.90899726317438	4.91989652546828	5.21426919294702	5.04859880913959	5.2915480410876	-0.224444613438693	0.491393231259442	0.762973206346307
Merged-chr12-86945296-3	chr12	86945186	86945386	+	713.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1755.0	NM_001289431	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	3.5604485141481	3.61359871100186	3.44696523864585	3.69634761789	3.62380520129692	3.61956674974642	3.54727930742783	3.71298309107867	0.109769561609945	0.81849922416314	0.930445174876607
Merged-chr14-10209220-4	chr14	10209123	10209323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 5 of 9)	MTD|LTR|ERVL-MaLR	244235.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	5.69242576921395	5.30259653544095	5.81377212778953	6.00214378102213	5.79054101449386	5.52643471566228	5.71380912407503	5.76290887191968	-0.0585539210356009	0.839159122342796	0.938895262970456
Merged-chr10-5825038-4	chr10	5824938	5825138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019958)	TTS (NM_019958)	-1095.0	NM_175374	108853.0	Mm.55082	NM_175374	ENSMUSG00000019774	Mtrf1l	9130004K12Rik	mitochondrial translational release factor 1-like	protein-coding	5.37810340703541	5.23429440098811	5.28927496865607	5.29121191731511	5.29341042674566	5.52348846106117	5.38057624323133	5.45899503387529	0.201662308032306	0.468900290488681	0.747999692905717
Merged-chr10-89695543-3	chr10	89695505	89695705	+	836.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130956, intron 2 of 2)	intron (NR_130956, intron 2 of 2)	9242.0	NR_130956	69002.0	Mm.293947	NR_130956	ENSMUSG00000097383	1500026H17Rik	-	RIKEN cDNA 1500026H17 gene	ncRNA	2.92699980461413	2.87300496451955	3.20021147025327	2.60008778195878	2.42970997558107	2.84157440746946	2.79026625858825	3.04173010394894	-0.544371397488691	0.44840140085661	0.73368496417573
Merged-chr8-41373932-4	chr8	41373842	41374042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019734, intron 1 of 13)	intron (NM_019734, intron 1 of 13)	755.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	6.00734304138834	6.08207385862257	6.4023432964137	6.7443385687702	6.13403547568416	6.16310342255214	6.43507266522577	6.11460560374031	-0.22007611284787	0.416114364066872	0.710072021761014
Merged-chr14-118423741-3	chr14	118423574	118423774	+	720.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	57796.0	NR_045624	73306.0	Mm.362328	NR_045624	ENSMUSG00000099911	1700044C05Rik	-	RIKEN cDNA 1700044C05 gene	ncRNA	3.15047140437174	2.82101623686435	3.09866008807388	2.69223501630483	2.47793903956288	3.15852322566351	2.72227103303475	2.58147678172895	-0.865576885890169	0.23449201070289	0.544407604548078
Merged-chr18-63484923-4	chr18	63484818	63485018	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97735.0	NM_001039485	667742.0	Mm.158720	NM_172629	ENSMUSG00000041482	Piezo2	5930434P17|9030411M15Rik|9430028L06Rik|Fam38b|Fam38b2	piezo-type mechanosensitive ion channel component 2	protein-coding	4.07561606992001	3.69292363617078	3.83565711226432	4.31263717602704	3.58048597833364	3.84514554243714	3.96805297092146	4.07368105261461	-0.385356285555976	0.429241015450541	0.720143399871997
Merged-chr8-22945079-4	chr8	22945003	22945203	+	839.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29733.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	3.92799716925347	3.99987949643264	3.66847667481721	3.84168298414892	3.92620563829833	4.14269148405812	3.5359396079244	3.66654905924183	-0.0720727329921448	0.880096119577084	0.955083490960425
Merged-chr5-62846921-4	chr5	62846836	62847036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 6 of 8)	intron (NM_001170705, intron 6 of 8)	33113.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	6.97296173044259	6.84809908129488	7.04400911093107	7.02782434463864	6.64767335206514	6.36413158653638	6.53393318430457	6.2016556362623	-0.739352855754503	0.000590306742201472	0.00883090449835195
Merged-chr5-32104330-4	chr5	32104244	32104444	+	872.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32128.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	4.32077376460119	4.02280262855146	4.36152958383082	4.34921756568301	4.05046135070453	4.12224035556991	4.26061518984164	3.88764444926785	-0.477778400496404	0.250193671813428	0.561249063980067
Merged-chr3-152463615-3	chr3	152463516	152463716	+	995.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001346655)	TTS (NM_001346655)	66932.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	3.79276884487427	3.65929598878716	4.10023502910381	4.45903137691931	3.91316803367123	4.39803432904896	3.8878882661522	4.00332875326368	0.0197424724810837	0.968554300616364	0.988709364438564
Merged-chr11-94413213-4	chr11	94413123	94413323	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009783, intron 33 of 35)	intron (NM_009783, intron 33 of 35)	-20247.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	5.67321013722625	5.06456172274971	5.78182815285909	5.86520011397191	5.0834435121804	4.59176415333967	5.12663173492328	5.00514804143314	-1.20525909332615	0.000581633825919051	0.0087172430103872
Merged-chr19-9837134-4	chr19	9837033	9837233	+	963.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	62400.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	5.11030222525561	5.01859847251309	5.14292467441265	4.52657774315715	5.13455175874349	5.15073886657829	5.17818213663086	5.17030562127719	0.40273185616868	0.230736589368046	0.540242548931978
Merged-chr7-110613784-4	chr7	110613659	110613859	+	795.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 1 of 40)	intron (NM_177324, intron 1 of 40)	1161.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	4.06459755801413	3.95014106604818	4.24484375371087	4.24310366258159	4.02018588793327	4.13880828741197	4.26626258594193	4.01377011250643	-0.0723973077233081	0.861202554560078	0.947574515069552
Merged-chr12-80110418-2	chr12	80110318	80110518	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007564, exon 2 of 2)	exon (NM_007564, exon 2 of 2)	2595.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	3.62046649260505	3.3810975852505	3.41019994892276	2.88877971949915	3.56853737878065	3.78993549449865	3.14907325612902	3.34991532967098	0.457974794972166	0.445073553488913	0.731198136541277
Merged-chr10-19693052-8	chr10	19692906	19693106	+	964.3312380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19581.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	4.01029399053412	4.23657244955021	4.50292657638743	4.37184126726564	4.10837171088487	4.18893175009197	4.32529159731375	4.46234312065677	-0.0581772401555459	0.886065605333626	0.957233805182238
Merged-chr12-79132339-4	chr12	79132248	79132448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	1560.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	8.25777419435048	8.64702818233771	8.28214261715436	8.22232152477564	8.38458564422435	8.64029690476599	8.10498462740281	8.18196654391607	-0.0238670442769039	0.900629519489303	0.963161804192488
Merged-chr3-97228843-4	chr3	97228738	97228938	+	809.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1474.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	3.26986962101403	3.50333912089369	3.27021040514071	3.70701803752578	3.72722557434182	3.52169265278854	4.14146655098425	3.9679388822244	1.18841474399622	0.0312124475037647	0.171916025757987
Merged-chr15-38653157-4	chr15	38653087	38653287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8717.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	4.80231684132869	4.82167729686455	5.11127688303612	4.92323808240973	4.86793609577649	4.97759921618904	4.95954859279267	5.01347691785824	0.0643797636237045	0.839348723309956	0.938895262970456
Merged-chr8-35495048-4	chr8	35494917	35495117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026067, intron 1 of 6)	CpG	516.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	5.91224676087267	6.13919658444292	6.27354045741049	5.8903256212109	6.12314563110324	6.2720760047993	6.38006416286814	6.57758754405556	0.442102662411929	0.0717202871762834	0.287680136947439
Merged-chr8-105565523-4	chr8	105565409	105565609	+	982.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	555.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	4.65773154800045	4.52939601788508	4.69863278095918	4.37208504950767	4.70232198422699	4.87364346430621	4.82417021431722	5.28425419166956	0.791763451007947	0.0266522671518975	0.155015666253057
Merged-chr10-28463939-3	chr10	28463841	28464041	+	979.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359356, intron 7 of 30)	intron (NM_001359356, intron 7 of 30)	-204419.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	4.04879844365912	4.41991085936257	4.35866375140495	4.91848568783453	3.47464727193553	3.89772965013383	3.87486637879827	3.77141168575211	-1.99867909422581	5.64304394879611e-05	0.00125559932863819
Merged-chr4-46487521-4	chr4	46487414	46487614	+	858.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1815.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	4.10894750494739	3.73193532002755	3.71795461543488	4.14586911305581	3.96989475825362	3.58358788144993	3.9592275133062	4.06420041856334	-0.114173217952842	0.810285890982802	0.92679579587174
Merged-chr12-101959405-3	chr12	101959323	101959523	+	833.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1180.0	NM_001167914	110616.0	Mm.271914	NM_029705	ENSMUSG00000021189	Atxn3	2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3	ataxin 3	protein-coding	3.0155589149474	3.05357389563995	3.15179478288942	3.23786963141396	3.54283544467775	3.26444526443626	3.26289505144605	3.79655241993286	1.27848343302395	0.0244692232616728	0.146270362759296
Merged-chr13-45950691-4	chr13	45950574	45950774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	14317.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	6.25054189747029	6.33932795067703	6.23172799431402	6.29203414029364	6.7458190974565	6.55875048112756	6.38520336517007	6.43064049337428	0.392731459609618	0.0736681947867295	0.292391705870387
Merged-chr14-33813506-4	chr14	33813409	33813609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2226.0	NR_131113	218902.0	Mm.107791	NR_131113	ENSMUSG00000115751	4930503F20Rik	4930453C15	RIKEN cDNA 4930503F20 gene	ncRNA	5.12340014007353	5.61582104118473	5.08935244747837	5.27951505498081	5.2634005433776	5.42911455335944	5.09943605370255	5.36995811516186	-0.0104101563780678	0.972968263532462	0.990282195228149
Merged-chr7-142387945-4	chr7	142387839	142388039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009983)	promoter-TSS (NM_009983)	-69.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	7.96573737898205	7.74141489374936	7.82665565421536	7.93558957348241	8.11190065113455	8.27086250265008	8.06100400012708	8.3387120051968	0.418569847418881	0.0113278036561243	0.0862170376859787
Merged-chr2-71037710-4	chr2	71037601	71037801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	MLT1L|LTR|ERVL-MaLR	17905.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	5.95189964324744	5.71120907873201	5.90953660047811	6.14852289074911	5.76890608455612	5.73259665852285	5.55584461910568	5.8137955023716	-0.373244972829026	0.153016115295139	0.437539651946915
Merged-chr15-53237698-3	chr15	53237601	53237801	+	956.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	108482.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	4.34701859340754	4.43581924870134	4.42914661596765	4.641082405849	3.94466924571154	4.08157836916998	4.1965292660632	4.16481674362728	-0.962369476516289	0.0162451767749204	0.110896272912828
Merged-chr2-91206800-3	chr2	91206695	91206895	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007387, exon 7 of 11)	exon (NM_007387, exon 7 of 11)	3883.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	6.38937065758235	6.6895351864183	6.31418490032609	6.45434201932866	6.70201414848957	6.75538730943848	6.8029139519012	6.60609147556724	0.353660177046981	0.0948968906163301	0.337092812515209
Merged-chr4-32572327-4	chr4	32572216	32572416	+	978.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_026843)	promoter-TSS (NR_026843)	-654.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	5.89244684058973	5.53045808394798	5.89349062207907	6.04750377225645	5.6078794168726	5.1415214062644	5.46546714515505	5.84567219807153	-0.527169510415807	0.0758474460219723	0.297563370385402
Merged-chr7-44501913-3	chr7	44501829	44502029	+	677.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028169)	TTS (NM_028169)	5341.0	NM_028169	75538.0	Mm.258841	NM_028169	ENSMUSG00000051113	Fam71e1	0610007G24Rik|1700021N13Rik|1700021P22Rik|GARI-L5	family with sequence similarity 71, member E1	protein-coding	3.49133145590797	3.43628873292675	2.93910551464138	2.9881797273414	3.23689778348658	3.32734626089358	3.26147412625519	3.63148991673298	0.497645584861995	0.39966155489052	0.697841526200229
Merged-chr2-181918667-4	chr2	181918566	181918766	+	889.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54306.0	NM_025901	67005.0	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	4.57840954729811	4.20144155752857	4.68060899389823	4.66877656156227	4.2075181302397	3.9587443211759	3.82134733150157	4.11343327205903	-1.25340274329179	0.00362795538525328	0.037086634549324
Merged-chr17-28707461-4	chr17	28707346	28707546	+	905.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	14878.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	4.65547828233568	4.45097367584022	5.06571754487991	4.67860100320331	4.15929242973676	4.3969949906404	4.47699174582352	4.36173113702259	-0.861651979971289	0.0265668639689454	0.154657954563308
Merged-chr13-38960460-4	chr13	38960328	38960528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131019)	promoter-TSS (NR_131019)	109.0	NM_001170430	108652.0	Mm.255506	NM_134060	ENSMUSG00000021432	Slc35b3	4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2	solute carrier family 35, member B3	protein-coding	5.95616329360195	5.34309087217875	6.04257140881719	6.12183090191695	6.05811637529469	6.04151470858989	5.96992176424278	6.01746156346365	0.179887596167435	0.517266056534609	0.778803651723338
Merged-chr16-30600633-4	chr16	30600545	30600745	+	874.220215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177632, exon 1 of 1)	exon (NM_177632, exon 1 of 1)	922.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	4.32346966976111	4.61371606348672	4.57049996782706	3.93819479678928	4.33401629508021	4.49844341249631	4.3488758726829	4.45037145094193	0.0762454324294475	0.854410952875711	0.94514215669568
Merged-chr8-115571907-4	chr8	115571793	115571993	+	939.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	135001.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	4.91585792200071	4.3327463841341	4.29489217376974	4.86348246776283	4.79378526209923	4.65528830694849	4.50280101559076	4.24156324276773	-0.155545228424407	0.705662643357101	0.881790297238375
Merged-chr17-8857162-2	chr17	8857072	8857272	+	654.5	f0_balb.idr|f0_c57.idr	intron (NM_001347321, intron 1 of 21)	intron (NM_001347321, intron 1 of 21)	7187.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	3.65521518759112	3.47488663582982	3.54616850839802	3.90867697867755	3.71388172297714	3.54041591624207	3.74078831489721	3.70504914373678	0.0177525010924959	0.971238618511078	0.989661202321986
Merged-chr10-127070825-2	chr10	127070725	127070925	+	688.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025982)	promoter-TSS (NM_025982)	344.0	NR_040660	100504703.0	Mm.387029	NR_040660	ENSMUSG00000112639	A730063M14Rik	-	RIKEN cDNA A730063M14 gene	ncRNA	3.41707548010092	3.18557348308569	3.12378270153359	2.93885147336988	2.99795770620917	3.48083591917798	3.29451990087886	3.61001469308784	0.697149269400227	0.233136224669108	0.542744181053883
Merged-chr2-103832120-4	chr2	103832024	103832224	+	915.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-21502.0	NR_040514	78031.0	Mm.243867	NR_040514	ENSMUSG00000086687	4930547E08Rik	-	RIKEN cDNA 4930547E08 gene	ncRNA	4.54842725870985	5.18934391605607	4.94041304793707	3.8009088227217	4.461392782447	4.72556913801667	4.39785560264319	4.32012119677287	-0.511974024367796	0.288289255195399	0.600320077688646
Merged-chr9-44579597-4	chr9	44579482	44579682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25310.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	6.74765369137342	7.09264691283549	6.7937185542449	6.69504876902189	7.03510124322037	7.39039719364559	6.99829314185344	7.13353615694555	0.424052349573346	0.0427489810683378	0.210183720623279
Merged-chr2-163676967-4	chr2	163676865	163677065	+	931.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 2 of 4)	intron (NM_001039390, intron 2 of 4)	-17072.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	5.5327327211674	5.18034660897763	4.97788095942384	5.55392881651993	5.00761111853582	4.78235683961716	4.71516590108738	5.29689346113961	-0.694774362482358	0.0448227171537165	0.216344760580755
Merged-chr7-142344895-3	chr7	142344791	142344991	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177265, intron 3 of 3)	L1MD|LINE|L1	27368.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	3.22220363511803	3.50946323709961	3.3020308682606	3.29552144356376	3.99681424921935	4.44384382642733	4.3940554208937	4.41399294949669	2.85100523236364	3.13120490071314e-08	1.49983871889543e-06
Merged-chr9-116088071-4	chr9	116087979	116088179	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009371, exon 8 of 8)	3' UTR (NM_009371, exon 8 of 8)	87284.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.40802826525003	5.15782775290392	5.06004211155091	4.96924126702676	5.59858081653972	5.46695964855161	5.40901788513896	5.31917878654545	0.570126204055716	0.0534159135647258	0.241215348510375
Merged-chr10-19687900-4	chr10	19687865	19688065	+	891.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24622.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	4.15116750195793	3.93871066438078	4.15181695430952	3.96417054908436	3.71156234486391	3.97867097413071	4.4400383342805	3.9600502565508	-0.0102140144131316	0.982101631131351	0.993573193675204
Merged-chr2-153496554-4	chr2	153496415	153496615	+	987.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134300, intron 1 of 10)	intron (NM_001134300, intron 1 of 10)	33456.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	5.18698465396286	4.86365114866449	4.9906698467713	5.48265173091851	4.98734993206573	5.01731529437132	5.22117050819276	4.91427203541312	-0.255885526856984	0.447047450526672	0.732729850942819
Merged-chr3-89285429-4	chr3	89285349	89285549	+	803.424988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4498.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	4.48701496983305	4.07937663228723	3.97597879129137	4.34409079937375	4.23890363158258	3.80420354954377	3.90704399347847	4.25494837530382	-0.424927252604099	0.341784335054149	0.650755862859763
Merged-chr15-55502596-1	chr15	55502496	55502696	+	737.0	f0_balb.idr	intron (NM_181277, intron 45 of 47)	intron (NM_181277, intron 45 of 47)	54716.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	3.06543407770034	2.90703001466057	3.06584821165253	3.15720458621724	2.753594948437	2.92966152518736	2.94055212825514	2.75605101700161	-0.967543073115888	0.117650813091274	0.379372439296176
Merged-chr10-67048444-2	chr10	67048344	67048544	+	627.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	43369.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	3.12347030497568	2.74933180934776	2.71375616051934	2.55651827140978	2.79457403335981	2.88936651308061	2.83440263013602	2.84333460173576	0.207251309913967	0.750236453907697	0.90166450912108
Merged-chr15-90667050-4	chr15	90666950	90667150	+	963.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	12338.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	5.66132949179798	5.96245224499144	6.17753865169383	6.38110048833146	5.33242067266954	5.03504586330525	5.82834352708979	5.63153841890777	-0.973958780259406	0.0021498556315197	0.0247326437941588
Merged-chr12-80877866-4	chr12	80877788	80877988	+	833.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178682, exon 6 of 6)	3' UTR (NM_178682, exon 6 of 6)	46559.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	4.46985585159855	4.12883759521845	4.11988740432667	4.354006808492	4.13767926151204	4.60066396277817	4.19859024570809	4.26023206666756	0.0578972112670225	0.886595007238395	0.957444179369024
Merged-chr12-85516026-3	chr12	85515946	85516146	+	840.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42156.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	3.63563652385912	4.19161010730568	3.69281752365371	3.73624401358678	4.32479036177171	3.5667656450139	3.50281520125682	3.6907949720227	-0.014062904900462	0.979557923056989	0.99269129061727
Merged-chr18-36514220-4	chr18	36514183	36514383	+	945.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010415, intron 2 of 5)	intron (NM_010415, intron 2 of 5)	1522.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	4.38025893743314	4.48902107734957	4.76751182584601	4.18468486730011	4.26627399599985	4.41666462851398	4.67630140088116	4.66029147001154	0.11870118772869	0.764942177748361	0.907929991409496
Merged-chr17-43553978-3	chr17	43553862	43554062	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-10323.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	4.77447310279478	4.90718975913282	4.63979572686619	4.86126302080212	3.91905045311276	4.0747860724959	3.74036397628587	4.06061069119996	-2.13336840044217	3.79123521742688e-07	1.44154023259203e-05
Merged-chr3-52196317-6	chr3	52196136	52196336	+	991.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72101.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	4.16479378735478	4.0585891477203	3.83870325176866	3.61329784995683	4.0510413028075	3.72626474793357	3.76957460087106	4.20316305939077	0.0838436053189221	0.86033051091582	0.947128143348069
Merged-chr3-96670188-4	chr3	96670076	96670276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081139)	promoter-TSS (NM_001081139)	45.0	NM_001356540	213121.0	Mm.39732	NM_001081139	ENSMUSG00000038354	Ankrd35	4732436F15Rik	ankyrin repeat domain 35	protein-coding	6.0540960498234	6.04474671542722	5.79463224483994	5.91130642078882	7.04696116445511	6.88366567858749	7.11821663172913	6.91041049045716	1.52013188746255	8.18061592039518e-13	8.86283197256938e-11
Merged-chr1-131448547-4	chr1	131448446	131448646	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	78815.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	5.77106428098691	5.8212996865358	5.33105924048405	5.56221223100684	5.45515575975705	5.41177362097688	5.03126215252122	5.19694079066938	-0.599526083600447	0.0461979329097669	0.220737240154682
Merged-chr7-126739623-4	chr7	126739481	126739681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-20045.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	5.67805071797759	5.51927918320192	5.3839427491759	5.23453645241796	5.65701654534667	5.67347625295608	5.35722414026666	5.46766787835448	0.173615775507375	0.544030049145389	0.795027379566929
Merged-chr12-111889415-4	chr12	111889317	111889517	+	907.354126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011625, intron 1 of 16)	MIRb|SINE|MIR	18638.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	4.60832325600592	4.33503411433539	4.73227146977442	5.16765661493535	4.97197302751908	4.94450963914289	4.63006864456521	5.03997782802327	0.276543351849595	0.480020366714707	0.75564081252342
Merged-chr7-75667750-4	chr7	75667633	75667833	+	777.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 10 of 36)	intron (NM_029332, intron 10 of 36)	-180605.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	3.86715170813696	4.0256260773281	3.65032804326488	3.16015403660063	4.05307962907638	4.18026200747542	3.69324618432357	3.91446366842976	0.731794407749492	0.169297297311565	0.461822724438512
Merged-chr2-120128767-4	chr2	120128660	120128860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 2 of 5)	intron (NM_133838, intron 2 of 5)	25815.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	5.80836414214741	5.68349212929266	5.80938380097182	5.9756001464917	5.54888328712462	5.88605737965417	5.95581307484699	5.756855132928	-0.0783076794754499	0.765241438545107	0.908121379696602
Merged-chr11-115475650-4	chr11	115475553	115475753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361594)	promoter-TSS (NM_001361594)	-14.0	NM_177778	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	6.27486695676518	6.22700124823718	5.68396553985956	6.13486014218563	6.39430916918887	6.33737984969502	6.42838934055412	5.73651936912782	0.234320893404938	0.395154336537709	0.694092009979952
Merged-chr6-49039706-4	chr6	49039610	49039810	+	914.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053110, intron 1 of 10)	B3A|SINE|B2	3192.0	NM_053110	93695.0	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	4.60609643328465	4.5987529772937	4.56831373305508	4.55649867237448	4.52816372049689	4.33664016472291	4.38193972242196	4.52567117524118	-0.292667737266464	0.41397825534074	0.708838812152508
Merged-chr5-99248703-4	chr5	99248608	99248808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	4219.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.0146015113646	6.99244952328619	7.28073328392865	7.2651290463957	6.96738826449441	7.20591588958554	7.57809426157948	7.17859962031587	0.131918662083394	0.536920246287806	0.790842135758298
Merged-chr3-127492189-2	chr3	127492088	127492288	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	6927.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	2.02126373502139	2.05592939525136	2.1056509410132	1.795968922851	2.44531061587024	2.44216013654347	2.68237225518457	2.58411150435141	5.09056036385081	6.54594590368322e-07	2.37721369121565e-05
Merged-chr14-21409821-2	chr14	21409721	21409921	+	769.174988	f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 9 of 10)	intron (NM_134079, intron 9 of 10)	-89949.0	NM_001205241	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	3.3694046747421	3.19969056934197	3.25365766176335	3.89497205002208	3.1398194986192	3.09466106497566	3.30072653785203	3.4743936164113	-0.759861020796364	0.20718506081906	0.511175781726586
Merged-chr10-115323492-4	chr10	115323419	115323619	+	851.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7928.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	4.31139299717465	3.71631132011532	3.79964469470621	4.2975506309477	4.0678677595073	4.08344898166578	4.08610904654507	3.90706034442357	-0.0847021512748071	0.854356338912546	0.945141310652665
Merged-chr4-125124945-4	chr4	125124822	125125022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153159, intron 2 of 5)	intron (NM_153159, intron 2 of 5)	2959.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	7.09877580180428	7.53339482655691	7.06285376042852	6.67062140418809	7.55164199238783	7.70658697208298	7.50114271256162	6.9934330604501	0.461970691185145	0.0658646108038032	0.273251566847579
Merged-chr7-19077873-5	chr7	19077735	19077935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010058, intron 1 of 4)	intron (NM_010058, intron 1 of 4)	1635.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	5.78590211036036	5.51474000345575	5.78691817421988	5.6599943719353	5.98411155416409	6.10176437071189	6.20685207678367	5.9006643546985	0.587044648562316	0.0181657986175251	0.11999557119028
Merged-chr9-96631565-4	chr9	96631458	96631658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053268)	promoter-TSS (NM_053268)	-55.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	6.94526473078386	7.1431372127872	7.09898908971312	7.12256974554843	7.28099230016324	7.1895588152118	7.51785780522886	7.08198072775942	0.266271422288933	0.168165967591963	0.460179995450643
Merged-chr8-104077197-4	chr8	104077113	104077313	+	919.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24412.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	4.50949617119987	4.42324066392242	4.89558017748066	4.40733847636846	4.24050675650419	4.83460183395281	4.40543896018612	4.13037085837738	-0.322182518765353	0.436105214201461	0.724990940109308
Merged-chr6-97457392-4	chr6	97457281	97457481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	1905.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	8.15194867138943	8.08705507069543	8.34232988376739	8.08687789583925	7.83135392212884	7.93685792994068	8.0655386117887	7.9094440765872	-0.298332582077358	0.0691282427092019	0.281093575100557
Merged-chr12-73846837-3	chr12	73846721	73846921	+	912.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-54503.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	3.65539067963951	3.86465333632675	3.37234665826557	3.6212367316381	3.43888508601861	3.72104456869862	3.53600776037434	3.49142263284819	-0.305655807317071	0.542129112016159	0.793675393131794
Merged-chr16-33624932-4	chr16	33624824	33625024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134251, exon 9 of 13)	exon (NM_134251, exon 9 of 13)	-59542.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	5.36102507819611	5.32209419659762	5.055376233768	5.67698007822056	5.22200497631334	5.5072738940294	5.88631629049316	5.55430036698408	0.287937424938407	0.371578301250148	0.675614006266856
Merged-chr12-112633146-4	chr12	112633065	112633265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 5 of 12)	intron (NM_007421, intron 5 of 12)	-11663.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	7.11423303760893	7.0378790628119	6.86714504816688	6.98084920457357	6.8324087653966	6.85233162371503	7.17677639850907	6.70149476116242	-0.139999500003473	0.494178167436312	0.764896282999593
Merged-chr8-46935071-4	chr8	46934964	46935164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51823.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	5.92448425854334	6.07742898843437	5.58672551941793	5.6727725959889	6.37225207358907	5.82407475312974	6.19712647525589	6.16959467421699	0.536186200830345	0.0434538226084644	0.212131565735569
Merged-chr11-30755187-3	chr11	30755073	30755273	+	662.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16602.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	3.23507804421336	3.12599432004275	3.29175940467518	3.31590608138385	3.34730175394267	3.01750900634164	3.22356092114529	3.34375723694569	-0.00954697780667097	0.986136584566598	0.994900441558934
Merged-chr13-75824796-4	chr13	75824714	75824914	+	971.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15071.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	5.25567929979605	5.12659910003655	5.01757652210458	5.45317116694243	5.12464369345989	5.1585582530877	5.73269561222155	5.42708853167899	0.255219132745034	0.430504324972396	0.721108120456474
Merged-chr10-20568487-3	chr10	20568387	20568587	+	724.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	-20159.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	3.31047170090008	3.42584823123558	3.47183992577771	3.42734017565783	3.33298381731772	3.30089653243159	3.24104655295438	3.1897697343203	-0.515844906666558	0.324735279864146	0.63626276514403
Merged-chr8-90833122-4	chr8	90832975	90833175	+	995.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 1 of 39)	intron (NM_177224, intron 1 of 39)	4240.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	4.730058347641	4.41432345342101	5.130586560053	5.00094898878501	4.74972088773804	4.55506171008246	4.82002667223348	5.00750495495695	-0.120778287641811	0.745101996501206	0.899431814827356
Merged-chr5-115631864-4	chr5	115631776	115631976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027810)	promoter-TSS (NR_027810)	-60.0	NR_027810	66123.0	Mm.133063	NM_021417	ENSMUSG00000107121	1110006O24Rik	-	RIKEN cDNA 1110006O24 gene	ncRNA	6.70860416223697	7.11236093481973	6.67851867906401	6.59135006590201	7.10715421248911	7.05926525121679	6.95061536732493	7.04145069597886	0.361707022314164	0.0878136950961025	0.32328194137502
Merged-chr5-101998432-4	chr5	101998340	101998540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	71481.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.79516793990721	5.86547377609262	5.82051663597504	5.95047413620123	5.97197289449454	5.92183799107998	6.04982253121447	5.74211113599841	0.0975518974039585	0.690397646890519	0.873911902618086
Merged-chr17-88337856-4	chr17	88337751	88337951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102853.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	6.65523729045637	6.43681814583613	6.53164587462791	7.09146427077197	6.22816362599006	6.55196573883484	6.65160888891369	6.19108978046223	-0.443442277202719	0.0844640704886829	0.316208282402249
Merged-chr1-175625658-4	chr1	175625608	175625808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010209)	promoter-TSS (NM_010209)	-73.0	NM_010209	14194.0	Mm.41502	NM_010209	ENSMUSG00000026526	Fh1	Fh|Fh-1	fumarate hydratase 1	protein-coding	8.50896867401722	8.70991877084327	8.57279076782399	8.86465190288971	8.49880940988194	8.49649193850573	8.69138757024428	8.3647767451507	-0.201622467929745	0.221563395227781	0.529607794644309
Merged-chr8-94711513-4	chr8	94711423	94711623	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15281.0	NM_026385	67801.0	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	5.06056646292925	5.20358365500085	5.0996294420536	5.12460301692693	5.67157677800959	5.84382526747533	6.19421867558466	5.56518190988636	1.22595217938132	2.71309056383061e-05	0.0006663736136746
Merged-chr19-53855173-4	chr19	53855066	53855266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 12 of 13)	intron (NM_001170847, intron 12 of 13)	-37065.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	5.83600090441504	6.0221580410825	5.9062740562154	6.11996459975566	5.93582844073986	5.46414664296901	5.85366851736829	5.83288199021721	-0.310114884181493	0.232742296745403	0.542394785713292
Merged-chr11-62643101-4	chr11	62642975	62643175	+	793.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198861, intron 1 of 3)	intron (NM_198861, intron 1 of 3)	4974.0	NM_001357955	192976.0	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	4.49999717666152	4.5572445149646	3.98018734105001	3.75552912239325	4.05997647217102	4.39559865738499	4.06520001925798	3.86688924382219	-0.32333181613359	0.502365499649359	0.769648598784799
Merged-chr11-87404554-4	chr11	87404457	87404657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031386)	promoter-TSS (NM_031386)	-62.0	NM_053269	114714.0	Mm.37376	NM_053269	ENSMUSG00000007646	Rad51c	R51H3|Rad51l2	RAD51 paralog C	protein-coding	7.49690730637762	7.88963190835244	7.04076641458892	7.14425267871719	8.17332921098959	8.13590867995136	7.7347566696416	7.7826504874825	0.704353138978467	0.00297729617075654	0.0318056377214888
Merged-chr12-28750047-1	chr12	28749947	28750147	+	1000.0	f1_c57bl6.idr	intron (NM_001161410, intron 1 of 11)	intron (NM_001161410, intron 1 of 11)	347.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	3.71102679328766	3.2345952740017	3.28175106263865	3.52981322887839	3.47665915960864	3.68370741206337	3.33206651054264	3.45827123023501	0.120315091150485	0.819701727572821	0.930966767725712
Merged-chr8-125569075-4	chr8	125568949	125569149	+	978.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	814.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	4.82168932180366	5.0440971965144	4.96559112668633	4.61796449762176	5.06308452674879	5.06903681290337	4.83666302088785	4.78091468840406	0.180155461303881	0.592714275605089	0.822377915114611
Merged-chr11-117783241-4	chr11	117783118	117783318	+	976.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001195088, exon 2 of 16)	exon (NM_001195088, exon 2 of 16)	560.0	NM_001195088	217356.0	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	4.12765129922169	4.05557326548588	4.31574365219977	4.15810897609287	4.33038462375254	4.35261055606268	4.41957310786406	4.6207259975735	0.644696580440138	0.0931732186865705	0.333919567639666
Merged-chr17-86300838-4	chr17	86300718	86300918	+	802.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	-13640.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	3.99768010857568	3.87507129360371	3.95198146981255	3.69457450803774	3.67937964936842	3.81083466878776	3.93479079104592	4.0404148574138	-0.0146391398699837	0.974176090272739	0.990810469957752
Merged-chr10-78426567-4	chr10	78426479	78426679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007793, intron 1 of 2)	intron (NM_007793, intron 1 of 2)	909.0	NM_007793	13014.0	Mm.6095	NM_007793	ENSMUSG00000005054	Cstb	AA960480|Stfb	cystatin B	protein-coding	6.09066931919823	6.13196199562725	5.82625094966097	5.79211340306232	6.00865037709914	6.11891450360712	5.69490282779867	6.06729815967531	0.0347571534463181	0.892063697346321	0.9596010491436
Merged-chr7-80324377-4	chr7	80324259	80324459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173445)	promoter-TSS (NM_173445)	95.0	NM_173445	269955.0	Mm.474502	NM_173445	ENSMUSG00000038930	Rccd1	5830436H09|E430018M08Rik	RCC1 domain containing 1	protein-coding	7.12369994696639	7.29783178219903	7.41279780632861	6.52921586970673	6.9390588180219	7.25480633074335	6.98085612540394	7.2409853284221	-0.0175481616844408	0.943609536054314	0.979684109320721
Merged-chr6-114258916-4	chr6	114258834	114259034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23701.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	7.70947191689772	7.58792094205254	7.7881665203165	7.77549820744929	7.41436851026628	7.38436447884091	7.61613240840801	7.64835812368599	-0.264397947986026	0.129732908325278	0.400906041293221
Merged-chr7-116371751-4	chr7	116371651	116371851	+	808.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011083, intron 13 of 32)	intron (NM_011083, intron 13 of 32)	-37561.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	4.13527676739291	4.05228716861175	3.93508346431149	4.2402142181961	4.32940053298653	4.11087641911578	4.20680644742095	4.22301256504623	0.29569348616899	0.466499880463539	0.746420287776482
Merged-chr5-117396628-4	chr5	117396513	117396713	+	814.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7590.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	4.25196497846094	3.99270223131083	4.43389346883717	4.48899359678594	4.260355469603	4.76266713478574	4.4547305749457	4.7305177023024	0.559504683908799	0.171037111958986	0.464162889513089
Merged-chr2-163602293-4	chr2	163602185	163602385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181734)	promoter-TSS (NM_181734)	-29.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	6.6842651458571	6.84028142045937	6.10734440472623	6.77000324748655	6.70827764136006	6.90557148317072	6.70958424181669	6.71024913686768	0.167013804568418	0.479348023777403	0.755076401136965
Merged-chr13-35741958-4	chr13	35741841	35742041	+	955.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123386, intron 1 of 6)	CpG	539.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	4.41221480976203	4.10356735083699	4.81168537634166	4.02267219294589	4.33452008211671	4.7435504713076	4.21181991280674	4.45193436704761	0.192700505591706	0.659018067891541	0.858075830194168
Merged-chr9-62373941-4	chr9	62373847	62374047	+	724.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 4 of 6)	intron (NM_009672, intron 4 of 6)	32604.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	3.67978630300515	4.00786599315602	3.8902150748055	3.79673824067685	3.75612874082115	3.79763664251058	4.00966979877989	3.88792046583988	0.044886369550905	0.919917488099241	0.970406583631903
Merged-chr10-41505711-2	chr10	41505611	41505811	+	761.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028430, intron 6 of 7)	B3A|SINE|B2	-13789.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	3.83061110181209	3.67250069670882	3.52011538562157	3.20234654448821	3.74506857805541	3.85610034306365	3.61752694981459	3.57544526800844	0.431633042947878	0.40224806853057	0.69983416283578
Merged-chr12-84766451-4	chr12	84766291	84766491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 1 of 3)	RMER13A1|LTR|ERVK	6721.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	5.53445619042895	5.2521821902166	5.06590197978152	5.26382874888044	4.96291002273544	4.9722459708538	5.43212428192421	5.40279225713051	-0.148774422923621	0.641476392940747	0.848739672716498
Merged-chr14-21811477-4	chr14	21811360	21811560	+	827.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20101.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	3.73141233977741	3.91154357122451	3.98901138739128	4.14483054049155	3.93331488888105	3.96082264027306	3.82562532396711	3.93922014454388	-0.142119972603329	0.74800994081824	0.900798759417346
Merged-chr14-73120186-4	chr14	73120090	73120290	+	965.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22320.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	4.56927839333402	4.98785527465191	4.68955198041028	4.56171608699835	4.64091578459606	4.78433741826783	4.62923783008719	4.38853732356728	-0.196707507871907	0.58874176004217	0.819855972760938
Merged-chr7-104353980-1	chr7	104353880	104354080	+	650.666687	f0_balb.idr	promoter-TSS (NM_175677)	promoter-TSS (NM_175677)	-622.0	NM_001146007	319236.0	Mm.425502	NM_175677	ENSMUSG00000057143	Trim12c	9230105E10Rik|Trim12-2	tripartite motif-containing 12C	protein-coding	3.14272209840555	2.92647713700309	3.4414970915304	3.11530165860791	2.92903120037441	2.93483952864234	2.88782717945083	2.96141478450024	-1.00025644740358	0.101488522943806	0.349535567552965
Merged-chr9-50501436-3	chr9	50501338	50501538	+	746.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029639, intron 3 of 3)	intron (NM_029639, intron 3 of 3)	3367.0	NR_040714	69631.0	Mm.414996	NR_040714	ENSMUSG00000101304	Plet1os	2310014F07Rik	placenta expressed transcript 1, opposite strand	ncRNA	3.82334858672675	4.02182199360907	4.02555414441711	4.00932096688324	4.33859544768962	3.7672703706763	3.91248070597708	3.97567221713757	0.150343805314766	0.737619037976901	0.896392006995728
Merged-chr17-65784820-4	chr17	65784724	65784924	+	998.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152099, intron 2 of 20)	MTC|LTR|ERVL-MaLR	1469.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	5.78632214157392	5.11834330605599	6.27750561484131	6.2179313927029	5.62028964834724	5.51266785552988	5.43373684793824	6.02260275011381	-0.427821248830466	0.222299689632255	0.530315094234949
Merged-chr16-4840463-4	chr16	4840389	4840589	+	751.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030192, intron 1 of 15)	L1MB7|LINE|L1	5073.0	NM_030192	78809.0	Mm.325551	NM_030192	ENSMUSG00000022518	4930562C15Rik	-	RIKEN cDNA 4930562C15 gene	protein-coding	4.06699942589838	3.62870934324028	4.31475808933978	3.88851793086503	3.96187471954746	3.93861841120927	3.90687942110749	4.10975049080371	-0.0227335363983324	0.960331967628698	0.985883800393479
Merged-chr7-116531449-4	chr7	116531362	116531562	+	976.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360375, intron 11 of 14)	intron (NM_001360375, intron 11 of 14)	27093.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	4.43549317680987	5.20754862737384	4.48477359649571	4.8371496134304	4.76145955868686	4.95683367851288	4.90256719811018	5.02108878230321	0.243445479558594	0.514668470474706	0.777156159784444
Merged-chr9-90227385-3	chr9	90227312	90227512	+	788.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_194334, exon 5 of 13)	exon (NM_194334, exon 5 of 13)	43357.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	3.13478831699083	3.1700778206381	3.07621956727634	3.16335046120981	3.04586644794582	3.18510400909948	3.00469712320841	3.07471501636909	-0.250373641194119	0.653525912639871	0.855082092898905
Merged-chr11-22954541-2	chr11	22954441	22954641	+	886.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361661, intron 2 of 2)	intron (NM_001361661, intron 2 of 2)	-17464.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	2.69515647476699	2.55948473922052	3.0764341685956	2.55852869152438	3.06803720802944	3.13301895060639	3.06327099689059	2.89802997234947	1.38978326984502	0.0332014716436855	0.178966115117447
Merged-chr5-65480596-4	chr5	65480495	65480695	+	951.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133697, intron 1 of 4)	ID_B1|SINE|B4	12240.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	4.69635450913902	4.96201565238978	4.48454046456191	4.80225601207538	4.55913068865249	5.08293808357759	4.59505425853631	4.73260890827346	-0.00776962564394367	0.982954434347388	0.993901749874462
Merged-chr7-80774329-4	chr7	80774155	80774355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	MIRb|SINE|MIR	29076.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	5.36188132229244	5.11646065669782	5.16689534627706	5.73203898146454	5.52016832968243	5.8065319572677	5.36586210846097	5.52872821746028	0.294049174169827	0.351754501227647	0.658995574501668
Merged-chr10-75059522-3	chr10	75059418	75059618	+	809.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1378.0	NM_001081412	110279.0	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	4.16536501704021	4.26104529048441	4.0696327072428	4.56165119289174	4.16525665623591	4.0321021326002	4.19312110171693	4.16347764212937	-0.392652052420086	0.347722444046655	0.655573868856196
Merged-chr4-133160430-3	chr4	133160323	133160523	+	907.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	RSINE1|SINE|B4	29790.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	3.8789025563378	3.72984899414923	4.06973371399787	3.84251442354007	3.70050351390596	4.23875006646284	4.17587781780859	3.65480104474834	0.224557596029998	0.634743151309869	0.845362199777063
Merged-chr11-49653023-2	chr11	49652923	49653123	+	763.416626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008029)	TTS (NM_008029)	-10572.0	NM_054037	68662.0	Mm.22802	NM_054037	ENSMUSG00000064057	Scgb3a1	HIN-1|LuLeu2|Pnsp2|UGRP2|Utgrp2	secretoglobin, family 3A, member 1	protein-coding	3.11248225027467	2.99928139074759	3.05550542492831	2.9007128828641	2.86461918560743	2.97440227296624	3.25644481861993	2.86509716513297	-0.0642039598782727	0.914507020732868	0.968058497102853
Merged-chr11-115599344-2	chr11	115599255	115599455	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173048, intron 1 of 16)	intron (NM_173048, intron 1 of 16)	4561.0	NM_001252067	260302.0	Mm.119479	NM_173048	ENSMUSG00000020740	Gga3	C230037M19Rik|mKIAA0154	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding	3.16749891613825	2.89309067903521	3.16791280723694	2.91341364241083	3.23050690718224	3.2193213800486	3.31917368497071	3.27869820069366	0.905693320562064	0.102691189221685	0.351981521964548
Merged-chr4-82858548-4	chr4	82858463	82858663	+	870.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149737, intron 1 of 7)	intron (NR_149737, intron 1 of 7)	1110.0	NR_149737	68268.0	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	4.49914990399389	4.14356632508783	4.00197868793041	3.92180775291803	5.05414693246137	4.5907937179777	4.83459750872796	4.6528527406681	1.49982554126981	0.000134544798578471	0.00260503951587979
Merged-chr17-83732330-4	chr17	83732219	83732419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 3 of 16)	intron (NM_054082, intron 3 of 16)	26156.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	7.94631981348154	7.70146629374784	7.86979393773854	8.10350297229419	7.75816205192502	7.6663927429772	8.03309146287846	7.56022209887454	-0.197124356798219	0.297816806661396	0.609987985766329
Merged-chr15-101316011-4	chr15	101315918	101316118	+	948.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22806.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	5.13080942690091	4.75166375056334	4.8730617787683	4.58740934825918	4.98194864986274	5.11481124442801	4.61631170900884	4.79602598961345	0.115791663090918	0.743946266295343	0.899145081565487
Merged-chr3-89164795-4	chr3	89164696	89164896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007712)	promoter-TSS (NM_007712)	1.0	NM_001163432	12748.0	Mm.288098	NM_007712	ENSMUSG00000068917	Clk2	AU041688	CDC-like kinase 2	protein-coding	7.5500129102264	7.69486153574859	7.41531832166823	7.60466889912122	7.63791959168001	7.94761900246436	7.88470810727097	7.84726191714991	0.333583853217654	0.0567647860673188	0.249591838243941
Merged-chr10-94107362-4	chr10	94107257	94107457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 8 of 20)	intron (NM_053072, intron 8 of 20)	-40574.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	6.17689301734701	5.35727846694815	6.05966812742659	6.53486021652775	5.87006662331773	5.67858093314473	6.04893448270856	6.17354757949507	-0.24368599441314	0.450347773679563	0.735291845521361
Merged-chr2-19055647-4	chr2	19055553	19055753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57334.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	5.26332816153542	5.60590402243507	5.32931464759816	5.49442841369996	5.86998165889675	5.88278813116554	5.30299983346736	5.35695752290953	0.344995331223886	0.255015394660216	0.566569098461811
Merged-chr4-3660140-4	chr4	3660032	3660232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040643, intron 3 of 3)	intron (NR_040643, intron 3 of 3)	3626.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	6.33795761289386	6.15628285673853	6.11584534455191	6.5631329630646	6.5766466497963	6.35856754818451	6.88809097439222	6.49167196725065	0.401285048588675	0.100628655167373	0.34827613761346
Merged-chr6-142814797-4	chr6	142814695	142814895	+	650.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045707, intron 2 of 6)	intron (NR_045707, intron 2 of 6)	564.0	NR_045707	665037.0	Mm.401493	NR_045707	ENSMUSG00000072683	Gm7457	EG665037	predicted gene 7457	ncRNA	3.88482222232158	3.78183107970945	3.60452013920705	4.08028907296416	4.08787687608866	4.05673357434695	4.13822071631098	3.72213183073279	0.405159828650267	0.384773455494665	0.686251531347055
Merged-chr4-10912808-4	chr4	10912695	10912895	+	976.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38297.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	5.73173163832238	5.79446862824753	5.02113017809136	5.59105800302099	5.43279673121876	5.68381352992038	5.14538057301558	5.2686523099073	-0.301998333672422	0.347690638631538	0.655546119710951
Merged-chr11-121722684-4	chr11	121722561	121722761	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20234.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	4.43958391394212	5.15546140060652	4.83859645180109	4.57256202519773	4.95292976885163	5.31462627085369	5.31041246792028	4.87296806092479	0.68125571776313	0.0614075058779706	0.262197832107168
Merged-chr11-44528643-4	chr11	44528572	44528772	+	764.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 2 of 5)	MTD|LTR|ERVL-MaLR	9295.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	3.43974446745891	3.46564419353753	3.74765043865277	3.47667694228151	3.45213278400606	3.667568213488	3.48326920477171	3.37929571160847	-0.121265490866975	0.808407154060345	0.926073961072841
Merged-chr12-85424051-4	chr12	85423944	85424144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49327.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	6.05491496523553	6.50822451416246	5.34092796521859	5.41402636094633	6.54940614275464	6.27352402427607	6.02476590068455	6.09310833847141	0.517431019903946	0.130093964438051	0.401507102056801
Merged-chr15-41613151-3	chr15	41613049	41613249	+	859.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	164046.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	3.48359564225911	3.30476824920898	3.83147486466918	3.39977125731162	3.27217601804509	3.20510580760413	3.41276675488944	4.06496243812717	0.0639396110099884	0.913408574396122	0.967524531047837
Merged-chr17-74454117-4	chr17	74454021	74454221	+	884.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 1 of 8)	RLTR26B_MM|LTR|ERVK	4987.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	5.32595209008718	5.32916400579684	5.01996966656399	4.79471724975297	5.4314686965354	4.84402056749473	4.96075498398432	4.86974979894964	-0.115207215293862	0.7470716873321	0.900397219210857
Merged-chr12-100202042-4	chr12	100201961	100202161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313934, intron 1 of 5)	AmnSINE1|SINE|Deu	1917.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	6.80934681211128	7.15274056690539	7.1064786476545	7.20250735343845	7.00965613226619	7.09836172624023	6.68615935735486	6.87620378391894	-0.217132370159049	0.294567437595964	0.606753248127819
Merged-chr7-47054830-4	chr7	47054719	47054919	+	849.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026436)	TTS (NM_026436)	4179.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	3.52853033208297	3.55099767031264	3.87895368261258	4.00165808279729	3.74898398807568	3.24192106929321	3.45792248641895	3.68875377589102	-0.644041892484276	0.233878831514138	0.543577222708428
Merged-chr13-58478078-4	chr13	58477984	58478184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-74741.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	5.31879496010548	5.07361252865023	5.02632749289049	5.74664948313628	5.10036420682733	5.16744125485088	5.62136736474818	4.78284378213327	-0.251881649648214	0.492816008497469	0.763780579372512
Merged-chr6-114655470-3	chr6	114655353	114655553	+	844.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 2 of 19)	intron (NM_001253718, intron 2 of 19)	12356.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	3.61215744250283	3.56940705122261	3.66445376975257	3.50648691325288	3.62221287486299	3.67480177458712	3.64931896514022	3.50055106620766	0.0989544217468507	0.834137457714405	0.93671749817143
Merged-chr2-130473197-3	chr2	130473098	130473298	+	719.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	22920.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	3.30429398291694	3.33301330696489	3.25420438141739	3.17341675449816	2.81830012425019	2.70294061722483	2.95577845033424	2.82875311353233	-1.97785806761375	0.00241148480386823	0.0270012705449956
Merged-chr2-73371350-3	chr2	73371191	73371391	+	888.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276444, intron 4 of 15)	intron (NM_001276444, intron 4 of 15)	15189.0	NM_001276443	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	3.23489337198949	3.17418545632309	3.34662012338804	3.38318973176437	2.95601280700949	3.34742104145372	3.22325267550802	3.23362414078296	-0.384023237436505	0.491804717295602	0.76321032490426
Merged-chr8-14608093-3	chr8	14608052	14608252	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-280384.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	5.24340675017371	4.93844204869587	5.60254830651212	5.87264937491768	4.30935555377056	4.07319349717583	4.40259240574715	4.19744754991502	-2.5827819349231	7.78918462690131e-10	5.10051860679124e-08
Merged-chr11-76243765-4	chr11	76243677	76243877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026029)	promoter-TSS (NM_026029)	41.0	NM_183263	67390.0	Mm.24886	NM_183263	ENSMUSG00000038046	Mrm3	4833420N02Rik|AI255153|HC90|Rnmtl1	mitochondrial rRNA methyltransferase 3	protein-coding	5.51447132982718	6.01506472027195	5.48563412005828	5.32566863102796	6.19486684069468	6.00182746002226	5.5449454383834	5.77637907920195	0.497151313893945	0.104420566302003	0.355318457252617
Merged-chr3-103280476-3	chr3	103280376	103280576	+	915.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079830, intron 1 of 18)	CpG	1183.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	4.22409992242302	4.30752133941708	4.61141061530516	4.35558929800982	3.88114441878037	4.20660084265221	4.11326216920509	4.07893000327205	-0.796212348482026	0.0529253391916905	0.239993165466353
Merged-chr16-24435518-4	chr16	24435407	24435607	+	926.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-12584.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	4.74226148676613	4.956316530946	4.66223768419964	5.07506228782007	4.48524989663432	4.6641393099984	5.2250881099433	4.77844503669205	-0.13919389502312	0.709591017939487	0.883642724791171
Merged-chr16-91612704-4	chr16	91612642	91612842	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6257.0	NM_001099738	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	5.10428933792715	4.96560546416656	4.7898459749933	4.58644700468041	5.62603126707197	5.74294977333646	5.63484890454644	5.5419279835158	1.43708619329105	1.67914491341218e-06	5.600743008049e-05
Merged-chr1-61772238-3	chr1	61772129	61772329	+	964.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081050, intron 2 of 22)	intron (NM_001081050, intron 2 of 22)	133405.0	NM_001081050	72823.0	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	3.58741377103618	3.20319664708883	3.68338972432639	3.47881837916839	3.15451827479541	3.22692819236153	3.35978232219246	3.68105047198241	-0.439389490299474	0.430286538573565	0.720911233069582
Merged-chr5-53547088-4	chr5	53546984	53547184	+	946.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8695.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	4.70394256097098	4.80508744778061	5.09489148017927	4.4619671144222	4.654243379845	4.48751539196524	4.71970482718271	4.53942117747204	-0.353187654104975	0.343089364352707	0.651793788273984
Merged-chr19-37434753-4	chr19	37434623	37434823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008245)	promoter-TSS (NM_008245)	-118.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	6.77069948805164	6.80716287689556	6.24670768717633	6.77907036429235	6.49703011068957	6.44457419080174	6.21477060505023	6.30184663390956	-0.445347274088725	0.0578998933570909	0.252589881666118
Merged-chr7-118821424-4	chr7	118821331	118821531	+	849.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 26 of 30)	intron (NM_027815, intron 26 of 30)	34182.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	3.60367669490827	3.52903334582406	4.15947636205729	4.07985630222974	3.60086638881247	3.59965113480061	3.53218551051535	3.86323929922208	-0.667421759082632	0.193659415666558	0.49380480138203
Merged-chr1-156581262-2	chr1	156581207	156581407	+	629.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	MTD|LTR|ERVL-MaLR	22520.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	2.70656464845788	2.67761036169163	2.57008786207816	2.53067205046282	2.75882318409717	2.8780507376356	2.76021489350103	2.88688149887212	0.988699012868027	0.115232955130338	0.375535814673078
Merged-chr4-133159887-4	chr4	133159786	133159986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	29253.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	6.97712011869732	7.25970978944752	7.04145364814664	6.9283066877294	7.15207496159595	7.14217468081185	7.01822809319045	7.26126184362271	0.128014456925709	0.507084243240834	0.772710503440438
Merged-chr3-127640055-4	chr3	127640002	127640202	+	757.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6966.0	NM_009718	11924.0	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	3.70975818382967	3.66352033217924	3.41660221841945	3.8637919179048	4.05425794615278	3.65784097516568	3.8878320454255	3.65457086620046	0.431773135026682	0.38067035869707	0.682959506520613
Merged-chr3-79980949-2	chr3	79980849	79981049	+	676.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95019.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	3.21408018381332	3.16239924571384	3.32983314724374	3.75247586931002	3.35560187434052	3.32540209699854	3.0114171558618	3.15125337666242	-0.64791364103295	0.279405496088533	0.591495502480744
Merged-chr6-83040809-4	chr6	83040656	83040856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013586, intron 4 of 13)	intron (NM_013586, intron 4 of 13)	6532.0	NM_013586	16950.0	Mm.380433	NM_013586	ENSMUSG00000000693	Loxl3	Lor2|Loxl2	lysyl oxidase-like 3	protein-coding	5.44646873907297	5.27979317334972	6.01060600014942	5.74124166657982	5.76230638547623	5.59489646119297	5.89866961088959	5.96622142822826	0.265341967324235	0.362812145738647	0.668027464471291
Merged-chr19-3321777-4	chr19	3321674	3321874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1527.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	6.03231266941823	5.87378335676632	5.71809348867833	6.02832959225681	5.5969778909633	5.81495882926734	5.76338034904915	5.73938767868057	-0.334070079078597	0.188202626437234	0.486793660640862
Merged-chr13-98264293-4	chr13	98264191	98264391	+	851.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271391, intron 1 of 7)	intron (NM_001271391, intron 1 of 7)	1215.0	NM_001271388	68558.0	Mm.209642	NM_023472	ENSMUSG00000021661	Ankra2	1110004M18Rik|Ankra	ankyrin repeat, family A (RFXANK-like), 2	protein-coding	3.7241143249623	4.60312725254735	4.19618821177049	3.898087044269	4.20088133172983	4.18204444693551	4.03959591993343	4.0046749545897	-0.0926828094887831	0.843747847264793	0.940773959404441
Merged-chr7-97083029-4	chr7	97082944	97083144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	1293.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	6.31101722697324	5.95583038533534	6.59018326645868	6.68207493792328	6.48710621409586	6.50894402804417	6.76992778027012	6.90055148229137	0.362629227674234	0.158263367180588	0.445134872270402
Merged-chr6-30303992-2	chr6	30303877	30304077	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_009459, intron 1 of 6)	CpG	562.0	NM_009459	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	5.5939602142388	5.51307881863984	5.45828624558383	5.12402707934047	5.81889505744808	5.68932525383332	5.45931166566253	5.59098274564402	0.409836606305364	0.154178124855301	0.439374014055949
Merged-chr12-79885467-4	chr12	79885350	79885550	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	39283.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	5.35161391336957	5.6966900203889	5.74036527790203	5.41761559019769	5.33644872012297	5.22647132360357	5.49444955269337	5.15317903494152	-0.429831463290231	0.141792096516262	0.41897212993196
Merged-chr15-78254975-3	chr15	78254875	78255075	+	886.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 5 of 9)	intron (NM_008677, intron 5 of 9)	10164.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	3.79483257090077	3.80925833937983	4.0603407775745	3.71666605197208	3.48593538513735	3.7571072378712	3.56858645165754	3.52104165988694	-0.81519486174606	0.090984523728944	0.329620585233982
Merged-chr9-14884834-4	chr9	14884755	14884955	+	991.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_176807)	TTS (NM_176807)	19096.0	NM_176807	64931.0	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	5.13166203076868	4.83469010108414	5.69805028461777	5.73449624488014	5.14969390432666	4.51318943176582	5.26535842245294	5.53236178180048	-0.439728194804636	0.277472951226177	0.589630021355625
Merged-chr4-6373127-4	chr4	6373035	6373235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	7455.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	6.42038794502018	6.36483159900945	6.83323661871265	7.08360527648575	6.68475333607883	6.04841704954594	6.81131235847627	6.34268758108596	-0.302320804105167	0.281073774683512	0.593153291080506
Merged-chr9-53390395-3	chr9	53390298	53390498	+	787.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212445, intron 2 of 7)	intron (NM_212445, intron 2 of 7)	6375.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	3.81471691662042	3.89277081081748	3.52401002272086	3.22699143504245	3.36108568183931	3.69689689461179	3.20863211024904	3.07420118355987	-0.946409237504714	0.11331918642234	0.372182833626604
Merged-chr19-43723624-4	chr19	43723533	43723733	+	968.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053103, intron 9 of 12)	intron (NM_053103, intron 9 of 12)	29367.0	NM_144874	226139.0	Mm.248237	NM_144874	ENSMUSG00000040018	Cox15	2900026G05Rik	cytochrome c oxidase assembly protein 15	protein-coding	4.42108664295012	4.42736791665641	4.42176808604371	4.48653099663572	4.84404905420049	4.12938605112637	4.96647852989049	4.70011839466025	0.572352974406715	0.143183131756069	0.421325166747956
Merged-chr2-18649008-4	chr2	18648846	18649046	+	970.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23516.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	3.46896446759649	3.4006538680028	3.41057405457701	3.68082152207881	3.59179863619085	3.39684761823851	3.80210529280153	3.6789506611431	0.375954194726497	0.457152682127914	0.740364738964964
Merged-chr6-122870120-4	chr6	122870028	122870228	+	983.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4429.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	5.20286243909638	4.90913874163117	5.28810447318631	5.03040524727891	4.89580496488533	5.01057549870218	4.69079909779605	4.94304124030648	-0.427715540211534	0.186551368179893	0.484582803058514
Merged-chr7-104370318-4	chr7	104370205	104370405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11659.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	6.81785232266361	6.84201853340142	6.68812412129657	6.0644421836133	6.94339560232312	6.89545334601604	7.19152357571163	6.84151316753554	0.49698123369325	0.0477853715333959	0.225514999875
Merged-chr8-70844695-4	chr8	70844526	70844726	+	917.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032397, intron 9 of 9)	intron (NM_032397, intron 9 of 9)	-4906.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	3.90458280996353	4.08493376722798	4.09966008480747	3.94074403698808	4.0637752056899	3.91604840922948	3.9402354425451	4.26549779007715	0.132132596362837	0.754233046049004	0.903214796307887
Merged-chr18-35573537-3	chr18	35573431	35573631	+	706.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010771, intron 2 of 14)	intron (NM_010771, intron 2 of 14)	11373.0	NM_010771	17184.0	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	3.59420403778523	3.05682007775042	3.39005990304028	3.39650571457017	3.4118356373895	3.38653860682659	3.32090995358927	3.38821717896941	0.0228098073793284	0.966090533622865	0.988022214295348
Merged-chr8-53434449-4	chr8	53434376	53434576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-77226.0	NM_001205054	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	5.91578960193588	5.47892771726561	5.93914380263871	6.41089170009913	5.8285638491096	6.0692967191753	5.76949994790808	5.76991947789224	-0.216286025760364	0.470900510387002	0.749563419478864
Merged-chr17-84922205-3	chr17	84922126	84922326	+	649.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027929, intron 2 of 3)	intron (NR_027929, intron 2 of 3)	-34515.0	NM_001159497	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	3.41061361110187	3.60935835795097	3.51357589884867	3.51632382110889	3.05294982870647	3.08050418506974	3.10270307833317	3.29791627696862	-1.46317694447891	0.00900904028779366	0.0732018845613107
Merged-chr7-66110025-4	chr7	66109916	66110116	+	893.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081163, exon 1 of 3)	exon (NM_001081163, exon 1 of 3)	501.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	4.25150107965172	3.95658697777612	4.03670218519031	4.09878636317881	3.92508827902307	4.20717139712578	3.64501578591825	3.88521775715708	-0.436028162888544	0.327862055979066	0.639190489551923
Merged-chr13-23454138-3	chr13	23454045	23454245	+	917.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11756.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	3.40975219961842	3.65720998930562	3.80476955638563	3.81878493355563	3.90167012773405	3.65113344565848	3.83579747792931	3.75306385316392	0.300526059446904	0.52860500446271	0.785158259471775
Merged-chr4-11480199-4	chr4	11480087	11480287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5771.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	5.75933316827243	5.49022535858864	5.60272537321872	6.11834647209419	5.93084150881606	5.72312530444524	5.87038322724317	5.91816533217616	0.125039730382262	0.656980769195512	0.856987449751083
Merged-chr4-94768841-3	chr4	94768741	94768941	+	973.544434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013690, intron 1 of 22)	ORR1E|LTR|ERVL-MaLR	29552.0	NM_001290551	21687.0	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	TEK receptor tyrosine kinase	protein-coding	4.34167989484145	4.15067450846834	4.78709340054963	5.46414963601597	3.54181157751157	4.00093419873073	3.7923393930772	4.04411096250355	-2.35381764120802	9.39039288903633e-06	0.000260279896981588
Merged-chr9-71179495-4	chr9	71179399	71179599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110517, intron 5 of 5)	MIR|SINE|MIR	10723.0	NR_110517	102635087.0	Mm.444536	NR_110517	ENSMUSG00000111429	Gm32511	-	predicted gene, 32511	ncRNA	5.28786042262087	5.50720718961809	5.53081747898298	5.39315828686454	5.83310548105336	5.67810137381701	5.44709054128426	5.86318056125515	0.492650277285117	0.0704335418463342	0.284366935625651
Merged-chr1-95657408-4	chr1	95657291	95657491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 2 of 3)	intron (NM_001159745, intron 2 of 3)	10203.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	7.73827237995589	7.42918471230525	8.03913989344643	7.96146993248044	7.61187077310361	7.48765566455718	7.74076739690994	7.59203843406964	-0.268407406706899	0.17436910660795	0.468779975798735
Merged-chr4-116821650-4	chr4	116821567	116821767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146256)	promoter-TSS (NM_146256)	-159.0	NM_146256	242642.0	Mm.279897	NM_146256	ENSMUSG00000043155	Hpdl	A830048M07Rik|BC034099|Gloxd1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding	5.68057903442172	6.23090468655201	6.39622181847395	5.67153519061448	5.44391385901709	5.77628231997441	6.0276564935088	6.22558774391256	-0.210683879694648	0.508069681105376	0.773277991562417
Merged-chr13-9874175-4	chr13	9874074	9874274	+	969.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108853.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	4.26579956394536	4.44225254447164	3.9040785707366	4.21209325556523	4.21374157414863	4.39435762133861	4.20197293492466	4.68285066149208	0.387241712888129	0.351837185086415	0.659093889162068
Merged-chr3-87561749-4	chr3	87561657	87561857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36179.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	5.75261340552767	6.11995263044443	5.50898010624857	5.7028796576357	5.65965374255114	5.85300038980126	5.86381135446282	5.82156814385131	0.0088845600125457	0.973835937284135	0.990599589807354
Merged-chr7-35741073-3	chr7	35740963	35741163	+	895.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 3 of 18)	B3|SINE|B2	13391.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	4.79649317187301	4.57915161734962	4.66068214167979	4.88958336265831	4.26475451524703	4.02087664774581	4.26698977421031	4.33029030171888	-1.19713974090885	0.00185242791077622	0.0220463460588164
Merged-chr9-106247894-4	chr9	106247774	106247974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291835)	promoter-TSS (NM_001291835)	80.0	NM_020559	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	6.36419985552204	6.20200515981963	6.44825294369277	6.07659764258045	6.06777442983366	6.3164982539562	6.0886741941815	6.07323047893333	-0.199013983674286	0.401651658832552	0.699189596811911
Merged-chr17-17064018-4	chr17	17063917	17064117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005358)	promoter-TSS (NM_001005358)	-86.0	NM_001005358	449000.0	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	5.82215959985617	5.59178554310887	5.82318516787847	5.41099236026863	5.78652931222317	5.79735324186172	6.0066485200161	5.99329731641611	0.400958000493118	0.131058952650101	0.402982642476199
Merged-chr6-22423693-3	chr6	22423549	22423749	+	974.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67568.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	4.24514920776422	3.5311087927319	3.76947377595754	4.22599501391193	4.11005153915347	3.890293364071	3.86408079839872	4.28209159520383	0.167214150574035	0.735533365408621	0.895620853939579
Merged-chr3-95995607-2	chr3	95995507	95995707	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023320, exon 2 of 6)	exon (NM_023320, exon 2 of 6)	232.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	3.53028134467441	3.14980063524579	3.30878002483875	3.33546158235053	3.38572434186903	3.48159210824585	3.41120818972587	3.71482235168826	0.577134784371351	0.267350171817719	0.579029536243968
Merged-chr14-19707513-3	chr14	19707400	19707600	+	789.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43757.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	3.33620808319541	3.98622213275536	3.45309405265073	3.47207831162997	3.55222636923843	3.25200098130236	3.43963000734811	3.13900438295359	-0.759205470035615	0.185704904280513	0.483585287292957
Merged-chr4-46138640-4	chr4	46138574	46138774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173033)	promoter-TSS (NM_173033)	35.0	NM_001355376	272027.0	Mm.249594	NM_173033	ENSMUSG00000035495	Tstd2	3010020C06	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	protein-coding	6.62638446391883	6.82866675612037	6.81470394131312	6.57728245788127	6.34871622136695	6.58503033625056	6.59374043045504	6.75523058681829	-0.201066894080673	0.353915540880349	0.660722172851847
Merged-chr4-149415978-3	chr4	149415875	149416075	+	795.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022022, intron 1 of 26)	intron (NM_022022, intron 1 of 26)	10656.0	NM_022022	63958.0	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	3.64215392612311	3.30742556398258	3.82732133204572	3.97490347752717	3.08241877777557	3.48224202519638	3.29253913498908	3.36497876453601	-1.41750666453202	0.0126330862844643	0.0931920871221771
Merged-chr7-110260111-4	chr7	110260016	110260216	+	772.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 3 of 11)	intron (NM_009302, intron 3 of 11)	38413.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	4.33383869073481	3.95487114149008	4.25285640430674	4.26896228948106	4.07548679813145	3.98317853378887	3.7889357192851	4.37056796416591	-0.355307843760607	0.415184349773663	0.709524545209949
Merged-chr5-3509688-4	chr5	3509607	3509807	+	789.070801	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-34126.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	4.32673989135198	4.80449448990412	4.09501918473806	3.96550217754273	4.14059705028068	4.11450236394814	4.42785825573332	4.09260525331456	-0.329676737307401	0.467309468324285	0.746968519290045
Merged-chr5-33822655-4	chr5	33822553	33822753	+	757.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20459.0	NM_175231	107823.0	Mm.19892	NM_175231	ENSMUSG00000057406	Nsd2	5830445G22Rik|9430010A17Rik|AW555663|C130020C13Rik|D030027O06Rik|D930023B08Rik|MMSET|Whsc1|Whsc1l|mKIAA1090	nuclear receptor binding SET domain protein 2	protein-coding	4.19571278816169	4.21268251600056	4.10303212385045	4.15147368985537	4.02791309695715	4.22758718421569	4.17788213922693	4.32187523380898	0.051663701161552	0.896547778995479	0.961155518163813
Merged-chr1-152604433-3	chr1	152604333	152604533	+	940.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	20784.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.309851757653	4.45869362323721	4.3918609708587	4.25203506698187	4.34859555679859	3.86026018757168	4.06408739562213	4.07865874480403	-0.592667668229695	0.157218369619396	0.443676840686984
Merged-chr11-44435928-3	chr11	44435833	44436033	+	591.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	34615.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	3.25279860146994	3.08602273196879	3.19610129866835	3.0421040537611	3.44130947538679	3.30816361780631	3.29441346305722	2.86519577343617	0.40912613447119	0.481952833608209	0.756902916640137
Merged-chr8-84913443-7	chr8	84913152	84913352	+	937.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_103491)	promoter-TSS (NR_103491)	-83.0	NR_103491	100503676.0	Mm.437155	NR_103491	ENSMUSG00000003812	Gm38426	-	predicted gene, 38426	ncRNA	4.17561945423716	4.12244699320737	3.98267390879748	4.18071233527816	4.26463696082473	4.30142004491021	4.15791268005396	3.98043333702465	0.156380414235721	0.69941057135762	0.878772573452614
Merged-chr5-137307689-4	chr5	137307553	137307753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031405)	promoter-TSS (NM_031405)	21.0	NM_031405	83701.0	Mm.387734	NM_031405	ENSMUSG00000037364	Srrt	2810019G02Rik|ASR2A|ASR2B|ASR2C|ASR2D|Ars2|Asr2	serrate RNA effector molecule homolog (Arabidopsis)	protein-coding	6.4608971027132	6.61025622427966	6.23374550604212	6.30831908399971	6.03897386424332	6.39022028392388	5.92445371124856	5.97427467306451	-0.484387891345066	0.0466405284028902	0.222047098601386
Merged-chr15-95794439-2	chr15	95794336	95794536	+	652.5	f0_balb.idr|f0_c57.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	3593.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	4.09171332024811	4.1378450600564	3.79646562461273	3.57573742551047	4.127426355515	4.02537297737857	3.72568495721761	4.08976326848592	0.257641021787931	0.584119343654228	0.817543313050016
Merged-chr8-105937106-4	chr8	105936996	105937196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013640, intron 4 of 7)	intron (NM_013640, intron 4 of 7)	1296.0	NM_013640	19171.0	Mm.787	NM_013640	ENSMUSG00000031897	Psmb10	Mecl-1|Mecl1	proteasome (prosome, macropain) subunit, beta type 10	protein-coding	6.03325524287994	5.68828831535316	5.60139139226548	5.4453802020755	5.96550486147837	6.16719024239438	6.15557769490517	5.90156628581189	0.574418643695228	0.031520310871786	0.173076001507588
Merged-chr9-18468247-4	chr9	18468147	18468347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028160, intron 4 of 7)	intron (NM_028160, intron 4 of 7)	5312.0	NM_028935	72230.0	Mm.289689	NM_028160	ENSMUSG00000074500	Zfp558	1700007A21Rik|4932704I17Rik|Zfp558-ps	zinc finger protein 558	protein-coding	6.12270918691145	6.36355585150297	6.44918533936131	6.89001778774518	6.2224770497563	6.18881070275711	6.39926207997064	6.5261447228649	-0.249931217643882	0.338601009453238	0.648092966867593
Merged-chr1-65283021-2	chr1	65282921	65283121	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28236.0	NM_139270	213527.0	Mm.294225	NM_139270	ENSMUSG00000025946	Pth2r	Pthr2	parathyroid hormone 2 receptor	protein-coding	3.75266204395038	3.14547146018951	3.25232541022562	3.33451972257923	3.57560178749508	3.42627348664161	3.04588466944951	3.18809548192966	-0.202777652149926	0.731656467819932	0.893715261582835
Merged-chr11-24076257-3	chr11	24076168	24076368	+	823.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1788.0	NM_016707	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	4.21888019456713	4.21087823873085	4.44472166440955	4.14099396800365	3.75932555271855	3.64849956745871	3.76764255463803	3.89057404550108	-1.34743958692803	0.00265056321138919	0.029020833536913
Merged-chr2-167761007-3	chr2	167760930	167761130	+	953.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69853.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	4.02915815151397	3.86245042152112	3.93882380955455	3.79627740305413	3.63686212331216	4.01244228671745	3.6645739660708	3.88845914727902	-0.288288841036371	0.52680167484997	0.78394239517028
Merged-chr1-184908741-3	chr1	184908697	184908897	+	852.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145515, intron 13 of 17)	intron (NM_145515, intron 13 of 17)	-25761.0	NM_178692	226777.0	Mm.169542	NM_178692	ENSMUSG00000039349	C130074G19Rik	-	RIKEN cDNA C130074G19 gene	protein-coding	3.03018599638216	2.93177618307439	3.3991793502707	3.15749149683644	2.93420504693256	3.01016169842887	2.95813864299423	2.96659635647342	-0.726875225430918	0.223997449246347	0.5321200961154
Merged-chr2-80267114-4	chr2	80267016	80267216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25354.0	NM_177256	320769.0	Mm.60992	NM_177256	ENSMUSG00000050114	Prdx6b	1-cysPrx-P1|4930414C22Rik|Aop2-rs1|Prdx5-rs1|Prdx6-ps1|Prdx6-rs1|Prdx6-rs1-ps	peroxiredoxin 6B	protein-coding	6.2164400296746	6.45048827805969	6.23836948121542	6.88390136909	6.51511690349933	6.83232986883055	6.62285214553543	6.59134975437496	0.203095369339787	0.42188682128235	0.714290384435583
Merged-chr13-108013291-4	chr13	108013185	108013385	+	878.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31189.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	4.63606269763517	4.58002699065417	4.56472982013715	4.46262990051073	4.21308858191752	4.19837337390139	4.34433605032012	4.01508319025003	-0.856565363689757	0.0269557415036574	0.156117390113005
Merged-chr7-145112600-4	chr7	145112497	145112697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95522.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	7.23310458810797	7.18444948416148	7.20173438351038	7.45337068119929	7.09846877173301	7.04004120410171	7.19816793596201	6.95451657342079	-0.281214322395591	0.138656862274189	0.414216102032682
Merged-chr19-26605054-4	chr19	26604944	26605144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011416)	promoter-TSS (NM_011416)	-116.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	9.25599489021417	9.15468542715758	9.51646576882306	9.52273922150822	8.93704210727009	9.11905802642726	9.39880224149885	8.99193491607402	-0.309852295073763	0.0743107057637024	0.293788142943489
Merged-chr9-65188792-3	chr9	65188690	65188890	+	868.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25900.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	3.56961506163438	3.43687704049502	3.1296027899354	3.34647893472185	3.80388295835366	3.5744685223306	3.83865914788587	3.62049268916424	1.09191559562472	0.0302422131075123	0.168142164268206
Merged-chr10-80305086-4	chr10	80304976	80305176	+	668.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011789, intron 5 of 13)	CpG-1275	3256.0	NM_011789	23805.0	Mm.57247	NM_011789	ENSMUSG00000020135	Apc2	AI852447|APCL|R75424	adenomatosis polyposis coli 2	protein-coding	3.7807433916449	4.05095015514672	4.02826979156339	3.81400525843016	4.08650892994137	3.90011490134919	3.91850991695972	3.7792145893824	0.04177643104377	0.924542005438098	0.972099190228437
Merged-chr13-97249167-3	chr13	97249062	97249262	+	808.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007930, intron 2 of 2)	intron (NM_007930, intron 2 of 2)	8057.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	3.62244121860963	3.90561442327911	3.62289680979436	3.78937431657623	3.81370131053303	3.85908380413296	3.92648182106538	4.34261218826827	0.710056563714739	0.127526728692634	0.397369460390093
Merged-chr5-92345212-4	chr5	92345130	92345330	+	897.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	3659.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	4.67009702711257	5.2240417683447	4.63037992797791	4.15873120166245	4.78835645857081	5.15759725095133	4.60860085224493	4.3032021662847	0.0495422520854623	0.911230639173496	0.966928967525129
Merged-chr17-23844073-3	chr17	23843979	23844179	+	997.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027644)	promoter-TSS (NM_027644)	77.0	NM_027644	71003.0	Mm.328839	NM_027644	ENSMUSG00000024114	Prss41	4931440B09Rik|Tessp-1|Tessp1	protease, serine 41	protein-coding	4.41411946187727	4.45589636667314	4.1287139566425	4.42380179642308	3.58769756139644	4.00019044947095	3.62154132038743	3.92872640943217	-1.59715833064317	0.000470335418919554	0.00734811342916483
Merged-chr4-62697625-3	chr4	62697527	62697727	+	838.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 12 of 15)	intron (NM_134257, intron 12 of 15)	23653.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	4.03979616982938	3.61611861189666	3.75580892994694	3.91749720188835	3.57506665179474	3.64141498876313	4.14173080593367	3.75368865184633	-0.141990883608034	0.770666798508083	0.910265273875382
Merged-chr1-92978887-4	chr1	92978783	92978983	+	698.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022320)	promoter-TSS (NM_022320)	-20.0	NM_022320	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	3.91647155312306	3.67142963504603	3.30807206961941	3.57882276505018	3.56377666817508	3.73842890988173	3.85482933374934	3.86973400640381	0.378475098012215	0.445864760065131	0.73171921081227
Merged-chr9-42141769-4	chr9	42141666	42141866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17469.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	5.57618269839695	5.21051376997602	5.91321539699	5.74596603000407	5.8941670065206	5.85719444070294	5.57612024961845	5.62702575387883	0.184028537645906	0.525705092995721	0.783367294725902
Merged-chr11-76179715-4	chr11	76179609	76179809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026664)	promoter-TSS (NM_026664)	-79.0	NM_026664	68299.0	Mm.46397	NM_026664	ENSMUSG00000017288	Vps53	2010002A08Rik|2310040I21Rik|3100002B05Rik|Hccs1	VPS53 GARP complex subunit	protein-coding	5.9774420144359	6.03863137055763	5.74882441803656	5.74324163874912	5.83939222938071	5.73698765653386	6.06719320118302	5.52564969432859	-0.109116174713392	0.682415214536966	0.869778185644929
Merged-chr2-61512253-4	chr2	61512160	61512360	+	951.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-66326.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	4.80903578708369	4.6583412980734	4.6222832285438	5.10172145528916	4.74333228760703	4.20765254411497	4.82073135486931	4.44686503921886	-0.511550339584971	0.19026210293692	0.48939961784284
Merged-chr12-32340654-3	chr12	32340581	32340781	+	751.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38108.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	2.73832842967217	2.52776101667521	2.58923229852362	2.43333777002505	3.18407144025773	3.22401072171784	3.09421176468166	2.99437473631408	2.73923957715707	2.31329667178888e-05	0.000579616596936579
Merged-chr1-177983256-4	chr1	177983173	177983373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8125.0	NR_155538	545391.0	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	9.04793499377411	9.12888895659832	9.14907044276023	8.71791576887973	9.16057882842913	9.35576462589529	9.43042769208359	9.1176356132937	0.314453745983908	0.0609968299862187	0.260988972142721
Merged-chr15-85042737-4	chr15	85042630	85042830	+	774.237488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356616)	promoter-TSS (NM_001356616)	-12.0	NM_001356616	73225.0	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	4.5692887881375	4.64042954646037	4.07614057201885	4.02098033003726	4.49952618380975	4.30840223115947	4.51078264733246	4.4501158820164	0.233875113676838	0.572748715189159	0.811326690382227
Merged-chr9-37657264-4	chr9	37657173	37657373	+	990.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025289)	promoter-TSS (NM_025289)	39.0	NM_025289	21376.0	Mm.28689	NM_025289	ENSMUSG00000011114	Tbrg1	AA408552|AA409675|Niam|Tb-5|mFLJ00213	transforming growth factor beta regulated gene 1	protein-coding	5.3616410123662	5.22099254566075	5.39185257806199	5.55292064817587	5.04172179149608	5.7267444898195	5.27565326646248	5.49877480044718	0.00283735879307793	0.992734688093163	0.997380030411996
Merged-chr3-62507021-4	chr3	62506907	62507107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028136)	promoter-TSS (NM_028136)	-19.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	7.37517062436125	7.22893210487694	7.24214999545233	7.52525068784244	7.39524936123385	6.85234374072437	7.52954174407262	7.07437944510263	-0.145468147118234	0.505089182016744	0.771248372557543
Merged-chr9-83554001-4	chr9	83553894	83554094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	5656.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	5.90103586584123	6.87585419135503	6.44776238294299	5.48606923275631	6.50975720213495	6.239555130552	5.91920863148559	5.46977567408559	-0.307957004936474	0.578812373203406	0.814986435843799
Merged-chr11-5542291-4	chr11	5542180	5542380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134033)	promoter-TSS (NM_134033)	-63.0	NM_134033	104479.0	Mm.210403	NM_134033	ENSMUSG00000020482	Ccdc117	1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601	coiled-coil domain containing 117	protein-coding	7.52667023551958	7.52828738701232	7.20811348771183	7.48166655230157	7.66606199026375	7.63979707064959	7.80948461558941	7.39847361412998	0.253895958136068	0.172168182451702	0.465442611939055
Merged-chr7-141447272-4	chr7	141447173	141447373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360657)	promoter-TSS (NM_001360657)	-378.0	NM_026020	67186.0	Mm.380435	NM_026020	ENSMUSG00000025508	Rplp2	2700049I22Rik	ribosomal protein, large P2	protein-coding	6.37613205138508	6.6385525265416	6.04397740853973	6.16505139895386	6.83758403995571	6.51725969701456	6.77284305226416	6.60605656328328	0.545393643873618	0.0211651182628903	0.132908798037346
Merged-chr2-38520102-4	chr2	38520022	38520222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159631, intron 1 of 9)	intron (NM_001159631, intron 1 of 9)	8246.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	6.1559680268022	6.32907685098036	6.68489300866961	6.53884026639155	6.20508515480602	5.81447658938723	6.06282445445479	6.21268536001062	-0.538613399099619	0.0298206632617241	0.166544134194293
Merged-chr19-29228285-4	chr19	29228185	29228385	+	854.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23518.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	4.54657863084125	4.47593567023974	4.54732521567042	4.57689687825515	4.31507622376653	4.18134552042388	4.04025840327459	4.10716141963674	-0.881965293649982	0.0233939758459027	0.141968607629952
Merged-chr2-6478498-4	chr2	6478394	6478594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125758.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	7.8742924333809	7.682397719526	7.71209904695643	8.02842253744105	7.6307250935107	7.90613165232046	8.03878932785683	7.96170070503079	0.0629920927349417	0.733776333816841	0.894646551297515
Merged-chr13-5605077-4	chr13	5604975	5605175	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	253017.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	4.91681121846035	4.78815611717567	4.88354226959676	5.10978720353133	4.69796435111565	4.56412115121913	4.95877386864333	4.56984978640503	-0.483925953618239	0.161099174587882	0.449699131259691
Merged-chr5-32137339-4	chr5	32137250	32137450	+	959.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	878.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	4.62174754127988	4.4598399315311	4.44800104887278	4.25153994919611	4.89580955851934	4.83700682163507	4.78855972394017	5.11847738599838	1.03014791401462	0.00298741775665207	0.0318802711395409
Merged-chr13-113013496-4	chr13	113013330	113013530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19562.0	NM_001037914	622408.0	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	5.46716729055905	5.18894273229035	5.59902555912699	5.42929666049743	5.42029323771854	5.55686361832714	5.46780339296037	5.28707850575503	0.0160929348662804	0.954539254399359	0.983787173349859
Merged-chr15-64068510-3	chr15	64068372	64068572	+	851.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-8024.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.51590910415094	3.6280038457146	3.8298560730142	3.29772178426758	3.28038745226311	3.74938528952803	3.81248319030464	3.87289843066115	0.373631325285235	0.479960535444196	0.755620431575299
Merged-chr7-55869407-4	chr7	55869305	55869505	+	953.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	ORR1B2|LTR|ERVL-MaLR	27334.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	4.24605874103334	4.39787009811912	3.96659628125083	4.32178886553714	4.5800269393815	4.61115819482467	4.78934988313205	5.0729306936914	1.16032610586762	0.00297228917496155	0.0317616831083303
Merged-chr11-6628741-4	chr11	6628631	6628831	+	833.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2664.0	NM_134011	21379.0	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	3.54424223473943	3.75361124162019	3.34791807162776	3.4751742764946	4.02760872722752	4.12883470461792	3.75347390753466	3.95826433336519	1.28704592793898	0.00630898611205377	0.0562741005601347
Merged-chr7-143506082-4	chr7	143505979	143506179	+	790.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3555.0	NM_009434	22113.0	Mm.334344	NM_009434	ENSMUSG00000010760	Phlda2	Ipl|Tssc3	pleckstrin homology like domain, family A, member 2	protein-coding	3.81905676726808	3.6724044949604	3.53406024096517	3.63596456141416	3.94080868648397	3.77535999064841	4.33376641583863	3.86765548594678	0.942825593514354	0.0415455210861588	0.20644750038645
Merged-chr3-83812165-4	chr3	83812057	83812257	+	882.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29451.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	4.82659153746012	4.19921611592841	4.50649083713075	4.83958170369609	4.54745659165187	4.14527998519663	4.35897685005637	4.37568121915197	-0.576601797296779	0.159652137539468	0.447308777717843
Merged-chr3-52000230-4	chr3	52000092	52000292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	104814.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	5.85049251752258	6.42568131780727	6.05881796923332	6.04155757889501	6.0425175483427	6.21311852515968	6.2410156615816	5.89640107850948	-0.0154639043643085	0.951548331227015	0.982792981377963
Merged-chr12-100831187-4	chr12	100831080	100831280	+	938.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361023, intron 2 of 11)	intron (NM_001361023, intron 2 of 11)	52123.0	NM_145448	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	4.61612140234144	4.41881888507878	4.57552659908875	4.76699977858407	4.28255056417266	4.70890053212446	5.03325221319658	4.93521283276219	0.328304385095386	0.398076654990781	0.696321100599351
Merged-chr5-65326358-4	chr5	65326255	65326455	+	994.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011258, intron 1 of 24)	intron (NM_011258, intron 1 of 24)	9284.0	NM_011258	19687.0	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	5.16500947097494	4.99099893129513	5.13265758933955	5.21315777382787	5.08463941969349	5.43414586472341	5.20400543480152	5.62347251181769	0.386535320712076	0.210594337588528	0.515129270474392
Merged-chr13-59847762-4	chr13	59847661	59847861	+	935.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-24614.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	3.94100278436431	4.24004235090458	4.35791467277078	4.17094690466584	4.33738415409655	3.82394496028338	4.4132749493054	4.04400785929214	-0.00462549518958688	0.991522176398	0.996745793587504
Merged-chr14-75025564-4	chr14	75025473	75025673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198642, intron 1 of 13)	intron (NM_198642, intron 1 of 13)	9546.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	4.87022852349833	5.40294547657064	5.26008083271458	5.06570890999498	5.08365142314206	5.49278153986842	5.03793184221358	5.62375490633428	0.300432209577423	0.363647973940657	0.668649715510373
Merged-chr17-64559238-3	chr17	64559135	64559335	+	701.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3645.0	NR_045899	100043582.0	Mm.11170	NR_045899	ENSMUSG00000073377	AU016765	-	expressed sequence AU016765	ncRNA	3.32655547930914	3.38003403040957	3.84951955656342	3.31181430876076	3.62917543456308	3.50544455264896	3.37748302540748	3.84699403298233	0.398192987438761	0.453416332505757	0.73749962595524
Merged-chr9-25541564-4	chr9	25541478	25541678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	RLTR53_Mm|LTR|ERVK	59981.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	6.43498085703109	6.50748091490542	6.35997189734589	6.54323835406896	7.17834095414211	7.01947096503265	6.94713037970071	6.86497071971022	0.768343193910734	0.000161842170269961	0.00304675055214111
Merged-chr6-113714507-4	chr6	113714412	113714612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3180.0	NR_138135	58991.0	Mm.379095	NM_021488	ENSMUSG00000064177	Ghrl	2210006E23Rik|Ghr|MTLRP|MTLRPAP|m46	ghrelin	protein-coding	6.09226042551235	5.7077039833859	5.96955786451371	6.03959931157612	5.64297037763922	5.85569123606641	6.06212311783984	5.98677721929345	-0.119696819184142	0.643787050184784	0.849901404168518
Merged-chr4-123957387-4	chr4	123957279	123957479	+	959.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39946.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	4.35578573772272	4.929249722749	4.79073281319192	4.84394173162518	4.67780899150269	4.80932647184101	4.65326842706924	5.11071611042624	0.1350927193797	0.710936783889836	0.884240356833917
Merged-chr11-62648436-2	chr11	62648336	62648536	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198861)	promoter-TSS (NM_198861)	87.0	NM_198861	192976.0	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	4.58475522916851	4.85447612759223	4.46205459658352	4.44880497925133	4.56313292062671	4.40502134679286	4.60239694356629	4.41538704052681	-0.199848775940866	0.588810033614592	0.819895283778149
Merged-chr9-62811830-6	chr9	62811731	62811931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010193)	promoter-TSS (NM_010193)	-183.0	NM_010193	14155.0	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	6.2680533203377	6.49767386519731	6.51247281710882	6.3643803134278	6.19743084485357	6.304370645749	6.25604414381218	6.33908655289495	-0.211088959609662	0.334065412476438	0.644805241742718
Merged-chr4-89282327-4	chr4	89282280	89282480	+	903.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040654)	promoter-TSS (NM_001040654)	-188.0	NM_001040654	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	3.92394648475694	3.63513983417721	4.05833677357631	3.85712202818272	3.68538250118065	3.72364685928468	3.81093285284259	3.9682781324072	-0.217313691900376	0.635344637292103	0.84567498415237
Merged-chr6-122562683-3	chr6	122562588	122562788	+	800.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009645, exon 5 of 5)	3' UTR (NM_009645, exon 5 of 5)	8879.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	3.62741585899898	3.59159804718602	3.38515793681421	3.65646198672401	3.83808902698948	4.0460516291094	3.61375521794466	3.83036192946334	0.785453933902468	0.0995812409746184	0.346165908933989
Merged-chr9-48547468-4	chr9	48547368	48547568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52125.0	NM_001004191	434402.0	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding	6.12631770787568	6.60886659534286	5.86167855915484	6.12445262207222	6.1159588499411	6.22062592547719	5.83184087613381	5.58447578237125	-0.383073711829623	0.183323864508317	0.480245118783694
Merged-chr8-88666556-4	chr8	88666461	88666661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 4 of 12)	intron (NM_145857, intron 4 of 12)	19214.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	7.10897144596745	6.92424624589594	7.15521162817051	6.94873378398254	7.05626278544251	6.78864901616113	7.22479627021376	6.83821524195678	-0.0520485478258006	0.798223466616625	0.921955533143952
Merged-chr11-69366630-4	chr11	69366532	69366732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146019, intron 1 of 39)	intron (NM_146019, intron 1 of 39)	2794.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	6.77595180876473	7.0684124034777	6.6207444182395	6.77996320290057	7.15258928737039	7.09283654323844	6.78587191809177	7.16104896288502	0.328660333533292	0.118102403154503	0.380170508884494
Merged-chr17-70993589-4	chr17	70993486	70993686	+	886.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357820)	TTS (NM_001357820)	-3070.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	4.72638074249048	4.92151087415106	4.58587682923191	4.37793653611533	4.34723499851241	4.16106211163915	4.12663272244586	4.03215260465198	-1.13404989493412	0.00615007787467925	0.055258317728073
Merged-chr19-46698353-4	chr19	46698258	46698458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025563, intron 1 of 4)	intron (NM_025563, intron 1 of 4)	8452.0	NM_025563	66439.0	Mm.87163	NM_025563	ENSMUSG00000062376	Borcs7	2010012O05Rik|4930569L17Rik|AI413851|AI467257	BLOC-1 related complex subunit 7	protein-coding	5.81735547484913	5.88589337284203	5.16809620078917	5.37378074026346	5.27152991149089	5.54024370855039	5.24403696535628	5.33001858843231	-0.423651070859404	0.178816173723834	0.474768029882581
Merged-chr5-24604924-4	chr5	24604825	24605025	+	962.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2923.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	5.23189081155009	4.96295739128615	5.55791615375243	5.04938864452946	4.73946491796075	4.66037980828046	4.8096492741973	4.94159905533285	-0.82514517261205	0.0158133775560227	0.108865577367754
Merged-chr1-42866188-3	chr1	42866099	42866299	+	910.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023514, intron 2 of 10)	RLTR9A3|LTR|ERVK	14966.0	NM_023514	69527.0	Mm.252982	NM_023514	ENSMUSG00000060679	Mrps9	2310002A08Rik|AW322516|Mrp-S9|S9mt|mg637	mitochondrial ribosomal protein S9	protein-coding	4.39927883427523	4.60296006699651	4.76542273952771	4.81725357004569	3.98608829026783	4.24405263890656	3.99166584692973	4.11452311657975	-1.42610383791372	0.000401093099226728	0.00645622019671174
Merged-chr5-138683231-4	chr5	138683161	138683361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60402.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	6.22411186517464	6.32794647286566	6.30184366235912	6.32984777639364	6.26482305802423	6.27769048104653	6.44213839573024	6.4542836830916	0.0883950515420557	0.68382620996666	0.87046260876057
Merged-chr15-103375901-2	chr15	103375801	103376001	+	970.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9110.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	3.61367277328948	3.67223770395128	3.45526808001545	2.97420762476152	3.70482653949802	3.5137779105429	3.3847925947116	3.33573162383217	0.145789724027891	0.799645764155268	0.922645256067561
Merged-chr2-148752488-4	chr2	148752372	148752572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177655, intron 2 of 3)	intron (NM_177655, intron 2 of 3)	2111.0	NM_177655	228756.0	Mm.189390	NM_177655	ENSMUSG00000055177	Cstl1	RCET1|RCET2|RCET3	cystatin-like 1	protein-coding	5.6560840263845	5.70198434654103	5.57486087296641	5.60678637131095	5.84827609095743	5.9585353302371	5.95429681906965	6.09715865874061	0.537050422185138	0.0296046469665168	0.165779967463591
Merged-chr7-116603356-4	chr7	116603247	116603447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	98978.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	5.92775544919976	6.4979373690994	6.21242966662277	6.62569626427406	6.10752658484265	6.24453337776051	6.30981128535407	5.97250626231899	-0.301157560036437	0.247863014345762	0.559021353152095
Merged-chr6-146746751-4	chr6	146746657	146746857	+	894.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346666, intron 1 of 11)	intron (NM_001346666, intron 1 of 11)	21827.0	NM_172734	232533.0	Mm.322121	NM_172734	ENSMUSG00000001630	Stk38l	4930473A22Rik|Ndr2|Ndr54	serine/threonine kinase 38 like	protein-coding	3.90502146656531	3.8569537842663	4.06061698902095	4.06420093711937	4.18157809819248	4.18512049719248	4.48550604750635	4.15201571720686	0.703413666055677	0.0885818370133563	0.324772702481544
Merged-chr13-48645201-4	chr13	48645108	48645308	+	992.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17828.0	NM_007526	12022.0	Mm.42241	NM_007526	ENSMUSG00000021381	Barx1	-	BarH-like homeobox 1	protein-coding	5.03326221223743	4.90397573085131	5.3483213949933	5.62599594487495	5.04219690243187	4.70531404704309	5.45230134125586	5.25829419474805	-0.241020872800657	0.507304715367764	0.772710503440438
Merged-chr14-33185199-4	chr14	33185113	33185313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146022)	promoter-TSS (NM_001146022)	-147.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	6.16873058824151	6.35264748782078	6.45178360086604	6.68263010692568	6.33900901327134	6.38818375039211	6.49990190852368	6.34189016765959	-0.0795754422949233	0.731746233316732	0.893763558604771
Merged-chr4-9643168-3	chr4	9643075	9643275	+	982.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	542.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	3.55817229813667	3.19834731204044	3.43311674235581	3.19714061258379	4.01715900439403	3.85087064399905	4.1496564444855	4.09080329302167	2.14876674270078	7.68527680990592e-06	0.00021785357150629
Merged-chr2-178506230-4	chr2	178506121	178506321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75706.0	NM_198656	381409.0	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	5.84297948725892	6.32606441030551	6.91931215935321	6.67987234558356	5.60989270568806	5.47265285009134	5.9790224359006	5.83982274220974	-1.18830014153896	0.000110578025961008	0.00220595103976418
Merged-chr18-56608891-4	chr18	56608772	56608972	+	781.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20524.0	NM_026099	67343.0	Mm.87057	NM_026099	ENSMUSG00000032900	Tex43	1700065I17Rik|Tseg7	testis expressed 43	protein-coding	3.75866021881095	3.88585128845059	3.30447537908459	3.9830546290298	4.26652115423015	3.93414008558183	3.84916308537603	4.13644445899111	0.800220477068614	0.120033231085564	0.383544862427696
Merged-chr17-48409885-4	chr17	48409801	48410001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357904)	promoter-TSS (NM_001357904)	-81.0	NM_010913	18044.0	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	8.90786138013957	9.32576836781147	8.88212916923901	8.66495774886459	9.11478374559078	9.36161341081819	9.22315998568042	8.96713338659102	0.257016620271658	0.170182901340779	0.463203311692493
Merged-chr11-3930202-4	chr11	3930109	3930309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130458, intron 2 of 9)	intron (NM_001130458, intron 2 of 9)	1752.0	NM_001130459	21452.0	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	6.3337843944887	6.11739481028113	6.55075621524112	6.70557876777456	6.19866733470442	5.89925528118419	6.51721799499841	6.21675240041271	-0.341585844705974	0.188680661456196	0.487410205479805
Merged-chr1-121136993-4	chr1	121136893	121137093	+	832.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49588.0	NR_110450	98452.0	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	3.43467911941867	3.27002940218362	3.56314180291326	3.79642483768437	4.3025637468218	3.85602216347728	3.96101571468325	4.02029227927619	1.43857993497163	0.00593375854926805	0.0538379859500766
Merged-chr15-61986176-4	chr15	61986076	61986276	+	945.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177353, intron 1 of 2)	CpG	835.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	4.04601659695692	4.92298841891705	4.9835216015224	4.24805860563048	4.53689523372414	4.39543588659831	4.74018565576143	4.36000206177401	-0.200197297362907	0.65318330069376	0.854997557892684
Merged-chr10-77974920-4	chr10	77974823	77975023	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3727.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	5.42889368319068	5.40665099325437	5.15827459935445	4.91893640230168	5.50115233870876	5.54723937202308	5.22939612168011	5.08575813708796	0.234211365570323	0.463222034382189	0.74463957416247
Merged-chr12-84114311-4	chr12	84114204	84114404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346528)	promoter-TSS (NM_001346528)	-24.0	NM_028821	105000.0	Mm.101525	NM_028821	ENSMUSG00000042523	Dnal1	1700010H15Rik|AW121714|Dnalc1|E330027P08Rik	dynein, axonemal, light chain 1	protein-coding	6.03247734091238	5.63370069694399	5.21049896030316	5.38653679648818	5.60158246008264	5.8620835817629	5.79904999535229	5.49646816773592	0.168987515061774	0.581061770004056	0.816097731204617
Merged-chr2-167250900-3	chr2	167250819	167251019	+	808.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10382.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	3.18971574220476	2.85991686732672	3.13634829891066	2.72658712485369	2.70718924308709	2.93780953769692	2.81865882974978	3.28930781826118	-0.131746634910554	0.841014940575539	0.939522293540496
Merged-chr3-100422628-3	chr3	100422523	100422723	+	905.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3782.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	3.63458275396784	3.54620258846446	3.73747865480504	3.66776998937578	3.36555284281146	3.9059679735302	3.67196319983012	3.52204915623459	-0.0781246223902847	0.874614504690268	0.952925927223413
Merged-chr11-101008286-4	chr11	101008196	101008396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1156.0	NM_016920	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	5.97657811632457	6.14327781772403	5.68061470043821	5.83085850235934	6.19995330569152	6.06249246316761	5.67937432387966	6.39923741578369	0.30862627793431	0.25706249442087	0.568810942638566
Merged-chr15-84845055-4	chr15	84844927	84845127	+	820.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356573, intron 2 of 12)	intron (NM_001356573, intron 2 of 12)	10072.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	3.81601291211872	3.70527878227958	3.37181638248142	3.61773720940629	3.75017475959517	3.78489509439993	3.7035139019721	3.66500131640518	0.275802034687432	0.560567507206807	0.80456182516632
Merged-chr11-102295489-4	chr11	102295428	102295628	+	662.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098836, intron 1 of 12)	intron (NM_001098836, intron 1 of 12)	1101.0	NM_001098836	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	3.71259818557474	3.76819663257426	3.37320475665892	3.11187858674616	3.6194860535875	3.72861292100342	3.83686417590574	3.6072329108792	0.59579163774305	0.263613317654246	0.575698227757848
Merged-chr8-46686941-4	chr8	46686826	46687026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M6|LINE|L1	52589.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	6.0356347077055	6.05918215076309	6.15480260201187	5.60280805841493	5.65868018965228	5.88598482748891	6.0852732247015	5.94704342737794	-0.106040572242247	0.698648757003294	0.878481929791375
Merged-chr10-80321138-4	chr10	80321090	80321290	+	945.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025521)	promoter-TSS (NM_025521)	-642.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	4.44293995265743	4.21546769716567	4.28032568889758	3.96662726101383	4.38021419379096	4.05584479801979	4.30349294387877	4.27763831099063	0.109930940588191	0.789125282650578	0.91835324030065
Merged-chr3-122191199-2	chr3	122191099	122191299	+	657.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54358.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	3.21710152515634	2.9962411135017	3.05243517503426	2.81749177931643	2.93297752024312	2.90073703761878	3.151736393769	2.9278807715573	-0.158354482433266	0.792753458477834	0.919687041333123
Merged-chr4-98189113-4	chr4	98189003	98189203	+	806.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	194162.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	3.89166006878653	3.97211525870557	4.18371288846335	4.33026763141726	4.36645195453234	3.70621478964591	4.0760363416623	4.18109830722419	-0.00688795203077278	0.988065305503091	0.995370064932717
Merged-chr9-100711121-3	chr9	100711019	100711219	+	956.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009282, intron 2 of 33)	intron (NM_009282, intron 2 of 33)	67671.0	NM_001357265	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	3.88184985417734	4.15205345977337	4.26260193982052	4.80469459862614	3.91492486744839	3.69397731186475	3.92039453726795	3.98604950316188	-1.18950281907763	0.0148503700259255	0.104090052986248
Merged-chr4-86875017-2	chr4	86874902	86875102	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290543, intron 1 of 5)	intron (NM_001290543, intron 1 of 5)	588.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	2.89698839794992	2.68818915687412	2.63746603641745	2.69144661368118	2.78787634867269	3.00649305159563	2.8268054809531	2.89581518903437	0.689930075013981	0.26395471883794	0.57601183628184
Merged-chr6-117917725-4	chr6	117917622	117917822	+	910.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166431, intron 2 of 2)	intron (NM_001166431, intron 2 of 2)	428.0	NM_001166427	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	4.14144234018396	4.28445861968086	3.98780902934041	4.08323230233446	4.2766087813252	4.40738021605105	4.4596152485291	4.27726351778344	0.558492736727847	0.151718628951475	0.435412422442889
Merged-chr9-111055082-1	chr9	111054982	111055182	+	751.0	f0_balb.idr	3' UTR (NM_001302376, exon 3 of 3)	3' UTR (NM_001302376, exon 3 of 3)	2162.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	3.86617243860572	3.80349542359911	3.48258632861546	3.33844981282607	3.72883805945328	3.35069988689616	3.29148056141459	3.09424924432727	-0.792769693244446	0.179878019024682	0.476180359869006
Merged-chr15-76671575-4	chr15	76671467	76671667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358933)	promoter-TSS (NM_001358933)	-76.0	NM_001358933	73062.0	Mm.322901	NM_033371	ENSMUSG00000033819	Ppp1r16a	2900084E10Rik|Mypt3|R75527	protein phosphatase 1, regulatory (inhibitor) subunit 16A	protein-coding	7.92442235929854	8.13383060879946	7.55328062081664	7.88518457252168	8.02155533419679	8.0066771525198	8.34298820285376	7.93464097478942	0.248680447454943	0.197141497326455	0.498437110190953
Merged-chr1-56192420-3	chr1	56192321	56192521	+	898.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER92D|LTR|ERV1	173443.0	NR_126076	69356.0	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA	3.76904512259449	4.4964629049603	4.16996710672478	4.32724526860966	2.90517294198331	3.1540289667223	3.18761038012147	3.3441191828867	-4.58508617386687	2.63870485422037e-08	1.28732263755004e-06
Merged-chr12-29713486-4	chr12	29713381	29713581	+	879.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361657, intron 3 of 24)	intron (NM_001361657, intron 3 of 24)	-27036.0	NR_046080	328075.0	Mm.447832	NR_046080	ENSMUSG00000112663	C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	4.58922179997138	3.91828839903777	4.1271427363381	4.05229037983744	4.97236918623047	4.94175992555935	4.60596285101518	4.6252486024292	1.3860212401025	0.000493843609319404	0.00764657260555708
Merged-chr19-4284482-3	chr19	4284380	4284580	+	927.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1343.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	3.65889905337116	3.3266698747833	3.80308896154648	3.74527736533024	3.64410539020264	3.42543993617887	3.64431566989882	3.49561210007092	-0.282637455800465	0.575991678030368	0.813323871152889
Merged-chr4-132793606-2	chr4	132793506	132793706	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033308, intron 1 of 5)	B2_Mm1a|SINE|B2	2758.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	3.27894941052939	3.54079016167458	3.21587016747535	3.01603154391399	3.4483653209321	3.39447000338177	3.26748517229857	3.86396886176448	0.831167313085957	0.138898529974484	0.414457946133613
Merged-chr1-153510583-4	chr1	153510478	153510678	+	980.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028749, intron 10 of 11)	intron (NM_028749, intron 10 of 11)	-22918.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	5.50083157228886	6.09003771814571	5.58761751114471	5.1596025696361	6.09628967127338	5.86969229247853	6.07166046434102	5.23702014404687	0.395816757655426	0.250441145550472	0.561574051926647
Merged-chr5-39820222-3	chr5	39820137	39820337	+	927.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175606.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	3.47398087269189	3.19122624355021	3.63814618142975	3.76291851683191	3.35531810057193	3.53025616590165	3.81061084935836	3.73443129839719	0.233018506662222	0.666192533512506	0.861911413823008
Merged-chr6-55016310-4	chr6	55016190	55016390	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-21711.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	5.09483307566915	4.80263073755949	5.45703614988647	5.47515080215817	4.66660617731467	5.06248955892673	4.86276144593603	4.76378621080743	-0.790613601882444	0.0244069293694736	0.146025117726298
Merged-chr8-122682643-3	chr8	122682525	122682725	+	693.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009824, intron 1 of 11)	intron (NM_009824, intron 1 of 11)	-4450.0	NM_177289	12398.0	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	3.41327692378892	3.46314457812066	3.34761668170878	3.33647751497746	3.90348358888466	3.87548406319382	4.08087689750784	3.80063535416498	1.64470171313387	0.00044234411834089	0.00697664790591319
Merged-chr18-35942319-4	chr18	35942227	35942427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22503.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	7.46675558722996	7.36911849344148	7.27847464157276	7.43082518019921	7.3163112726879	7.46615936424381	7.355021176811	7.29474326259983	-0.0456117209085437	0.793886412156399	0.92022175040272
Merged-chr13-17804397-5	chr13	17804326	17804526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081058, exon 1 of 14)	exon (NM_001081058, exon 1 of 14)	671.0	NM_001081058	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	4.48058391144914	4.97427478750682	5.09990009978892	4.67511175556315	5.03808546427855	4.80104594619376	4.91253609512079	5.29408530217911	0.404170870197671	0.251712955642647	0.563038266862185
Merged-chr1-74391521-4	chr1	74391435	74391635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153088)	promoter-TSS (NM_153088)	-74.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	8.26432453745993	8.62550967233344	8.51035813986635	8.38640990515186	8.3389516713219	8.54496827033306	8.63772724880175	8.29500613740143	0.00803140503380161	0.962170783991315	0.986416651799321
Merged-chr19-47465642-4	chr19	47465547	47465747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1236.0	NM_008018	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	6.68395737756107	6.98255234595472	6.95161170356198	7.0428970836439	6.29037094291359	5.92365046957647	6.4936716801466	6.68036011153098	-0.793192187024161	0.000986320972761656	0.0132889154874507
Merged-chr10-111298621-4	chr10	111298544	111298744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027914)	promoter-TSS (NM_027914)	-35.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	8.0724140973466	7.85526060541759	7.84487239738186	8.33395985624855	8.25171616473868	8.06883812383792	8.47093388739467	8.25040489276919	0.276928423809156	0.144675333495322	0.423824051291683
Merged-chr7-38267145-1	chr7	38267045	38267245	+	586.0	f0_c57.idr	intron (NM_025390, intron 3 of 6)	intron (NM_025390, intron 3 of 6)	4203.0	NM_025390	66161.0	Mm.22284	NM_025390	ENSMUSG00000030423	Pop4	1110023P21Rik|Rpp29	processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	2.85757668108581	2.77651176768965	2.71427233884804	2.90026884951569	3.17496513486842	3.27387883410211	3.09343784982937	3.15924952361071	1.46819256500454	0.0143048180590929	0.101424708101222
Merged-chr10-111576186-3	chr10	111576068	111576268	+	826.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18105.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	3.42863996628239	3.25820777105855	3.63233014680951	3.36297693979503	3.41936316778809	3.59806345604646	3.24145291621214	3.427241618106	0.0139215059761623	0.97867235546918	0.992495571226332
Merged-chr9-45268202-4	chr9	45268093	45268293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008348, intron 1 of 6)	intron (NM_008348, intron 1 of 6)	956.0	NR_136903	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	6.19972926746482	6.13361012202295	6.27862896748203	6.35796129261438	6.41564617765363	6.35677294921676	6.26519730502289	6.5134559695207	0.207574057452597	0.34823459071635	0.656104977172479
Merged-chr3-86842843-2	chr3	86842775	86842975	+	743.875	f0_balb.idr|f1_balb.idr	intron (NM_001195500, intron 2 of 11)	RLTR41A2|LTR|ERV1	78009.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	3.5191324880096	3.55541243076026	3.32632831025065	3.19947522899574	2.98051451189204	3.06912823755115	3.14524144021414	2.89193241131985	-1.58205795329185	0.00900998483599999	0.0732018845613107
Merged-chr10-95685336-4	chr10	95685252	95685452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121206.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	6.88873677362626	6.84086707998769	6.37913297372466	6.43313755855989	6.55520173541578	6.46073105460474	6.4182018907144	6.46396370859549	-0.245989318213463	0.288682433212521	0.600681913986027
Merged-chr1-157086327-2	chr1	157086227	157086427	+	593.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22323.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	3.21598007719864	3.26149735991644	3.33390180786379	3.01089648232637	3.30165773138799	3.26568452011264	3.61590914340866	3.33206658535733	0.677539991591385	0.209723812188539	0.514206580130481
Merged-chr19-47932446-4	chr19	47932352	47932552	+	826.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5260.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	3.92064908366781	4.02643495193064	3.6620232942032	3.77238696565931	3.89554513357648	3.59382970053509	3.70373944764367	4.05211413056178	-0.0661904448322313	0.88745944422321	0.957799052224803
Merged-chr16-12089856-4	chr16	12089752	12089952	+	777.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028277, intron 2 of 4)	intron (NM_028277, intron 2 of 4)	105739.0	NM_001174086	72555.0	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	4.01756576972397	3.94538864856807	3.96880514477215	3.93637517827573	4.07465780452803	4.09105416649661	4.21991550420757	4.1090454415411	0.424360056475274	0.295598036419899	0.607513569466314
Merged-chr6-97759533-3	chr6	97759441	97759641	+	715.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47517.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	3.17156971323682	3.12182479657448	3.39127328583991	3.36117219754875	3.31491545507687	3.28158639675484	3.16093990587142	3.04548274707089	-0.235655846206215	0.671124800899416	0.864507019889785
Merged-chr4-11076200-4	chr4	11076097	11076297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085493)	promoter-TSS (NM_001085493)	8.0	NM_001085493	76947.0	Mm.275265	NM_001085493	ENSMUSG00000050323	Ndufaf6	2310030N02Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	protein-coding	7.0929653308538	6.8662558409147	6.55829830406163	6.82444180095316	6.87631106333055	6.92541137874966	6.83991062642105	6.69896681480324	-0.0134966245740553	0.948659073485355	0.981505068413072
Merged-chr14-69249392-3	chr14	69249269	69249469	+	671.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026331, intron 2 of 3)	intron (NM_026331, intron 2 of 3)	35734.0	NM_026331	67712.0	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	3.29058074197026	3.12394464613476	3.44734434551857	3.57173131337015	3.03223231426083	3.08766309207328	3.10264093230044	3.23264944846465	-1.02023784626105	0.0756550131032375	0.297149186891159
Merged-chr16-44780850-3	chr16	44780749	44780949	+	847.711121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	15113.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	3.44265755977291	3.54269223735986	3.44312447495166	3.17614029954606	3.3401238764271	3.61476398016234	3.31404088546671	3.6475036810164	0.290560459384085	0.579723302785286	0.815474743074892
Merged-chr11-103051479-4	chr11	103051377	103051577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008707, intron 3 of 11)	intron (NM_008707, intron 3 of 11)	22934.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	6.88500123335112	6.94315702593197	6.79724835065221	6.81861047398447	5.99528199752142	6.42174345856687	6.12704345537736	6.01610147591057	-1.06038359724438	1.63552515221134e-06	5.4699152803151e-05
Merged-chr18-23604075-1	chr18	23603975	23604175	+	779.0	f0_balb.idr	3' UTR (NM_010087, exon 12 of 12)	3' UTR (NM_010087, exon 12 of 12)	106593.0	NM_001285810	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	3.01535250426752	2.9179575105635	3.28839182479989	3.32272248504796	2.88528898353152	2.85227703463802	2.87932018294775	3.0735318342289	-0.970448527545889	0.116855141908765	0.37822891846319
Merged-chr7-99539454-4	chr7	99539317	99539517	+	947.107178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178220, intron 1 of 14)	intron (NM_178220, intron 1 of 14)	3931.0	NM_177231	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	3.87819804751833	3.9377208609212	4.37888188439083	3.76371955612656	4.01745520039225	3.94818181297296	3.643312472371	3.71378387503981	-0.436372454597094	0.364491171091501	0.669279814395716
Merged-chr7-98103457-3	chr7	98103347	98103547	+	935.833374	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 3 of 48)	intron (NM_008663, intron 3 of 48)	5801.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	3.36254197152366	3.06999917226342	3.0957996540366	2.89356008556874	3.85944415416084	3.75889967855825	3.34985341343396	3.90005260443671	2.22830414882387	5.28642230842022e-05	0.00118850996048971
Merged-chr10-41883087-4	chr10	41883013	41883213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	-4326.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	6.12617599308343	6.42097419713964	6.38345595679427	6.07136869815433	6.61184982555284	6.01014472540105	5.801755105736	5.47704281829117	-0.297450209822439	0.346089574623524	0.654364893116659
Merged-chr1-86007984-4	chr1	86007879	86008079	+	919.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13963.0	NM_001122732	70060.0	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	4.55168235058055	4.89606476296577	4.50801327915681	4.16115533480259	5.08428646035263	5.06674003719745	4.90397862582549	4.45929982488837	0.752019405539167	0.0565565445674528	0.24907902064774
Merged-chr5-53267129-4	chr5	53267037	53267237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145433)	promoter-TSS (NM_001145433)	31.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	7.35392044137785	7.12415760868866	7.12078336886915	7.25880202058518	7.02080349322094	7.12204217970888	7.35676345367185	6.96701057415792	-0.132378718898635	0.495689938230852	0.765874409085869
Merged-chr4-63216591-2	chr4	63216469	63216669	+	567.75	f0_balb.idr|f1_balb.idr	intron (NM_025685, intron 1 of 60)	intron (NM_025685, intron 1 of 60)	1157.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	3.36751758284021	3.74616737342036	3.61246901510926	3.51945338772785	3.95953879072449	4.12005295211673	3.59828046702216	3.49395396047972	0.755323482855886	0.13513493798798	0.409283505651115
Merged-chr2-79302602-3	chr2	79302498	79302698	+	640.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010576, intron 16 of 27)	intron (NM_010576, intron 16 of 27)	47172.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	3.79689279274838	3.78930963556515	3.89978322518317	3.90425891717303	3.87001098242673	3.47768642061863	3.78202105128165	4.41381454567953	0.228780506121439	0.64694421295844	0.851526353307608
Merged-chr11-68851233-2	chr11	68851133	68851333	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023668, intron 1 of 8)	intron (NM_023668, intron 1 of 8)	1898.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	2.94278690759046	2.84001897541623	2.88303823142692	2.66193760029026	2.96004639294484	2.92756467089353	2.67671923836627	2.99893218025849	0.3189103568981	0.608462987234806	0.830675049522223
Merged-chr7-16010100-3	chr7	16010023	16010223	+	663.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10628.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	3.14595341822836	3.04967038664746	3.08071957482396	3.36739692902294	3.38005630638934	3.64812477989927	3.25631215443833	3.32378990279653	0.813339351902233	0.148586745369591	0.430423321537467
Merged-chr13-9882502-4	chr13	9882382	9882582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 4 of 4)	intron (NM_033269, intron 4 of 4)	-117161.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	6.09069782591641	6.31306410812557	6.04802763147491	6.33582557222792	6.37762992314431	6.13348130559743	6.3799381975183	6.26735354659526	0.123834791874746	0.591276130612674	0.821525680896513
Merged-chr17-87315423-4	chr17	87315343	87315543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 5 of 19)	intron (NM_028639, intron 5 of 19)	32557.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	5.99079374066363	5.70711599188796	5.17274772963371	5.82628350939225	5.70595897862817	5.55531757535768	5.55365012401206	5.46532644208219	-0.229803538998414	0.439802311459217	0.727425871224001
Merged-chr2-32380271-3	chr2	32380147	32380347	+	725.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198001, intron 1 of 1)	intron (NM_198001, intron 1 of 1)	1668.0	NM_198001	73737.0	Mm.27608	NM_198001	ENSMUSG00000039195	1110008P14Rik	C79326	RIKEN cDNA 1110008P14 gene	protein-coding	3.43263629059076	3.26417794009066	3.3739965876885	3.72422962353985	3.55875123212299	3.21835423243384	3.67745241959175	3.78196753169853	0.332975958626844	0.544456814312088	0.795245251291146
Merged-chr4-132815226-4	chr4	132815127	132815327	+	869.8291630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-18863.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	4.4174966234706	4.71700856279033	3.81890283712696	4.09236869702065	4.84982290610432	4.71648174282791	4.48220740274673	4.65491039529411	0.856754695643973	0.046218418209575	0.220790657029486
Merged-chr3-136701998-2	chr3	136701898	136702098	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	31932.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	3.02091818749483	3.25207709167601	3.19737846568587	2.70737789142979	2.72072754912807	3.13369849271928	3.18390642450509	3.08099796975751	-0.0741813935335956	0.908177307872879	0.966005448415727
Merged-chr17-27033008-4	chr17	27032918	27033118	+	932.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027544, intron 4 of 5)	intron (NM_027544, intron 4 of 5)	3759.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	3.914376217886	4.02209829093195	3.80436653472799	3.83382168713742	4.54515176608048	4.32630921372093	4.04735028945921	3.85865609330121	0.877728036775304	0.0479077086288923	0.225754570837201
Merged-chr8-94549689-4	chr8	94549599	94549799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153507, intron 2 of 15)	ID_B1|SINE|B4	16671.0	NM_153507	234577.0	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	5.55715536686972	5.668099236244	5.90366507404654	6.43173557171238	6.07099273515524	6.10251054090515	5.96291481495206	6.15172083705542	0.171063631057828	0.566478097377418	0.807900514541786
Merged-chr7-88230938-4	chr7	88230859	88231059	+	971.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCc|LINE|L1	-47126.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	5.09686801419361	5.11342681472937	4.9954335365043	5.3673091860161	5.42725703579322	4.85577911197551	5.03998228719225	4.84182386234275	-0.155349241873171	0.647461812760819	0.851667779256884
Merged-chr5-134507525-4	chr5	134507410	134507610	+	907.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009990, intron 8 of 16)	B3A|SINE|B2	44924.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	4.73890119289775	4.29108592359363	4.59719051245703	4.39577341771418	4.43715145727908	4.37748563629653	4.49796866285193	4.63150006811261	-0.0396296676148023	0.915728749669747	0.968763998229684
Merged-chr10-75517927-4	chr10	75517824	75518024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347201)	promoter-TSS (NM_001347201)	48.0	NM_001347201	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	7.61590709318104	7.72446743988007	7.26925727367127	7.14926341603514	7.51152512587563	7.80264943868327	7.408771140974	7.55149877224642	0.159040934250647	0.449743180252306	0.734839862538956
Merged-chr8-85299719-5	chr8	85299611	85299811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022997)	promoter-TSS (NM_022997)	79.0	NR_028268	56452.0	Mm.29709	NM_019716	ENSMUSG00000031697	Orc6	6720420I10Rik|Orc6l	origin recognition complex, subunit 6	protein-coding	6.83984263769925	6.67832660491352	6.95802088074168	6.50248435287118	6.77776418396792	6.96177752866992	6.81979985186036	6.96543944560392	0.19789710434937	0.350354929856918	0.657957721288732
Merged-chr1-180641191-7	chr1	180641127	180641327	+	948.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_120498)	promoter-TSS (NR_120498)	77.0	NR_120498	72568.0	Mm.275044	NM_175186	ENSMUSG00000058729	Lin9	2700022J23Rik|Bara|Lin-9|TGS|TGS1|mLin-9	lin-9 homolog (C. elegans)	protein-coding	5.65159781350589	5.55741632585135	5.62796648645394	5.61058541947244	5.3904149809847	5.64354327886932	5.41344524148725	5.03407291013507	-0.391653185725587	0.16907499163866	0.46161486940974
Merged-chr5-3503957-4	chr5	3503865	3504065	+	952.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-39868.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	4.86559666235206	4.58601287860283	4.61822475732098	4.64487577527988	4.61177249082601	4.22160881924524	4.70805643487152	4.53443559535172	-0.310541290139931	0.396748975471039	0.695372415340369
Merged-chr14-51064890-5	chr14	51064712	51064912	+	939.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6630.0	NM_207558	404319.0	Mm.377276	NM_207558	ENSMUSG00000035932	Olfr750	GA_x5J8B7W5WBF-6267395-6266441|GA_x6K02T2PMLR-6808276-6807281|MOR103-18	olfactory receptor 750	protein-coding	5.97261254792527	5.43906699439774	5.65928819842509	4.40881921473248	6.32346870556543	6.45173522600296	6.00489074869607	6.25557330390999	1.25071250399874	0.000847134475537151	0.0117823387216205
Merged-chr3-152355452-3	chr3	152355349	152355549	+	730.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355666, intron 1 of 21)	intron (NM_001355666, intron 1 of 21)	8971.0	NM_001076676	170822.0	Mm.258320	NM_133247	ENSMUSG00000025437	Usp33	9830169D19Rik|AA409780|Vdu1	ubiquitin specific peptidase 33	protein-coding	3.54101914412878	3.64803162289305	3.4359234633449	3.70364160628126	3.36660920405998	3.30540380889327	3.18485955251986	3.2577517597456	-1.09355037759595	0.0390355021714888	0.198535763420107
Merged-chr19-10881754-4	chr19	10881636	10881836	+	990.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134142)	promoter-TSS (NM_134142)	7.0	NM_134142	68539.0	Mm.251890	NM_134142	ENSMUSG00000034659	Tmem109	1110006I15Rik|AA958958|C77652	transmembrane protein 109	protein-coding	5.17241755531815	5.04801162756796	4.93385193561746	5.0291760181703	5.11586089305633	5.37619538777306	5.01764105298395	5.23054218775276	0.26440252589085	0.3832791398291	0.685170301476644
Merged-chr18-46576442-4	chr18	46576340	46576540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1907.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	6.62988040391217	6.67597842135469	6.4541184231429	6.58244825271445	6.42838643455704	6.66413726718614	6.27557298456568	6.37850299056648	-0.216445413578751	0.31615686509555	0.628034424554481
Merged-chr1-16688335-4	chr1	16688227	16688427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016923)	promoter-TSS (NM_016923)	-129.0	NM_016923	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	6.66083006451017	6.74156639996178	6.59820982813071	6.98939890970713	7.00036658401263	7.06499494505515	6.76078984723142	6.5771608606243	0.137529673211899	0.538624406000544	0.791679929829652
Merged-chr5-5514402-4	chr5	5514253	5514453	+	843.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001193660, exon 2 of 5)	5' UTR (NM_001193660, exon 2 of 5)	436.0	NM_001193660	64945.0	Mm.40132	NM_022890	ENSMUSG00000046798	Cldn12	-	claudin 12	protein-coding	4.11848939929329	3.82396562569703	4.24791913570003	3.95617650612323	4.08139353978044	4.09866429010201	4.05545908196715	4.07063078901641	0.105968925423322	0.800542550935308	0.923051549164522
Merged-chr1-55405785-4	chr1	55405669	55405869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114663)	promoter-TSS (NM_001114663)	-177.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	7.96180184812283	7.89724819395724	8.17382142211505	8.21145144865122	7.95818575981276	7.84393615326641	8.14092778820614	7.68718446037918	-0.196113718011267	0.280343265473753	0.592346638474506
Merged-chr3-15959086-3	chr3	15958992	15959192	+	799.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081687, intron 3 of 3)	intron (NM_001081687, intron 3 of 3)	47240.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	3.941289220701	3.80350446153518	4.06363737155168	4.32313727901729	3.07595687736344	3.18548884788066	3.13787949930589	3.14567889306048	-3.69672286814423	7.69677983246765e-08	3.37137902581671e-06
Merged-chr1-107565817-3	chr1	107565703	107565903	+	738.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24203.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	3.54684487208096	3.41594798005396	3.49299661315413	3.29711449785304	3.735807408529	3.36256886221414	3.72729906479168	3.49109889501192	0.539855019706721	0.282463250744218	0.594619849052298
Merged-chr7-99132836-3	chr7	99132767	99132967	+	781.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	8277.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	3.35909623695839	3.13505913395839	3.30466756869126	3.13189349606044	3.14748318102874	3.52774771644923	3.23511624404918	3.18574941910498	0.179780697431758	0.74200898505289	0.898417179766546
Merged-chr6-35536273-4	chr6	35536176	35536376	+	765.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008098, intron 1 of 3)	intron (NM_008098, intron 1 of 3)	3612.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	3.85085430387753	4.18329170882244	4.05146704472929	4.25633055598598	3.93991633743991	4.07636657847214	3.78270261254169	4.0490374944597	-0.385657367233946	0.376578253892731	0.679270057030434
Merged-chr10-80701615-1	chr10	80701515	80701715	+	644.0	f0_c57.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	205.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	4.21214938143813	4.22861152642916	3.90694050811935	3.99386717147373	4.25637941616976	4.42900306629817	4.00047274249995	4.59787031437879	0.615322145134942	0.141515004160531	0.418570391902864
Merged-chr5-135064142-4	chr5	135064029	135064229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025362)	promoter-TSS (NM_025362)	-77.0	NM_025362	66114.0	Mm.178012	NM_025362	ENSMUSG00000061118	Dnajc30	1300007M11Rik|Wbscr18	DnaJ heat shock protein family (Hsp40) member C30	protein-coding	7.33734913079798	7.26172457224984	6.58662659234087	6.95201051448153	7.28624088317912	7.3815207682281	7.00741735349398	7.01305493805178	0.162221663394048	0.484942862910769	0.75893206189538
Merged-chr8-79398090-4	chr8	79397995	79398195	+	832.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	1373.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	4.24743693696127	3.91404719500349	4.12073807410481	4.23633584172695	3.88088617945709	3.9947081646266	4.01063164820256	4.07256867809761	-0.414438412678868	0.326241323317867	0.637796455613789
Merged-chr16-89844763-4	chr16	89844661	89844861	+	961.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 12 of 27)	intron (NM_009384, intron 12 of 27)	-26409.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	4.86234148783246	4.4434434010534	4.681088563764	4.68212951906218	4.82926008259425	4.45278111024024	4.80552149753092	4.92581165961081	0.204643046840101	0.563271384970757	0.806215441601318
Merged-chr2-116953548-4	chr2	116953459	116953659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53407.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	6.36517965733575	6.91287998394149	6.71657136338127	5.94407907037743	6.57084713834406	6.54323200691715	6.50419178633387	6.14196246435479	-0.108055278133213	0.703358728736705	0.880690314212345
Merged-chr10-13986713-4	chr10	13986574	13986774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	20295.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	6.44879426919172	6.71218035152823	7.1626128008617	7.16593804673738	6.76718338654084	6.71660763325868	6.60415559414868	6.61731940218917	-0.336716746670603	0.160850870668368	0.449217409789453
Merged-chr2-166077194-2	chr2	166077093	166077293	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 18 of 20)	intron (NM_001252579, intron 18 of 20)	78092.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	2.97824462127244	2.97249823596128	2.97864317464118	2.62398712370363	2.71135939551212	3.14943655767124	2.84358701909925	2.97703127461859	0.159607495677295	0.802596281046193	0.923936032101707
Merged-chr10-82814787-4	chr10	82814657	82814857	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038042, intron 1 of 2)	intron (NR_038042, intron 1 of 2)	2634.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	4.74362370590183	5.00535171147416	5.58028656546599	5.34133930836737	5.64506676252058	5.38878772761446	5.59960901455746	5.33377510826803	0.515590568488748	0.117369603512688	0.378877596754176
Merged-chr8-11115395-4	chr8	11115301	11115501	+	996.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106971.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	7.0425751703896	6.77126802417763	6.9893491237548	6.93136470384497	5.70907123942751	6.19271929561923	6.1167909205811	5.55059622730526	-1.53081203988282	5.97544033514591e-10	4.00118407916605e-08
Merged-chr8-57487953-4	chr8	57487855	57488055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021788)	promoter-TSS (NM_021788)	-8.0	NR_126553	78353.0	Mm.426240	NR_126553	ENSMUSG00000096917	2500002B13Rik	-	RIKEN cDNA 2500002B13 gene	ncRNA	8.65775721006697	8.82590037216033	8.61818009238905	9.01110141644718	8.61984629953385	8.65915455949209	8.93029142711178	8.59404510704886	-0.109040924178488	0.521209316487668	0.781250328647867
Merged-chr15-98661473-4	chr15	98661367	98661567	+	945.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080981, intron 1 of 16)	intron (NM_001080981, intron 1 of 16)	1422.0	NM_001080981	74351.0	Mm.45725	NM_001080981	ENSMUSG00000003360	Ddx23	3110082M05Rik|4921506D17Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	protein-coding	4.58743207621323	4.45686809681708	4.46848714566829	4.39240931222289	4.29384851786632	4.59869583763062	4.31800215934577	4.72755457517256	0.0420759594754463	0.910789269427863	0.966847661644782
Merged-chr3-123335069-4	chr3	123334961	123335161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027135, intron 10 of 22)	intron (NM_027135, intron 10 of 22)	50929.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	5.98158186152049	5.81846090967206	6.45492004861071	6.36588621961504	5.94244038369671	5.86457721567568	5.99517187203915	5.65362796733586	-0.494963248498574	0.0681733393248585	0.278745752988085
Merged-chr11-35694897-4	chr11	35694795	35694995	+	907.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011412, intron 32 of 35)	ORR1G|LTR|ERVL-MaLR	-74600.0	NM_145962	211347.0	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	4.40372851081401	4.03670702725351	4.5856238099028	4.55381673111409	5.02090819906028	4.76238958448675	5.18211620960832	4.94805716635711	1.18814953417057	0.00142177223079064	0.0178862364113551
Merged-chr2-91495453-4	chr2	91495358	91495558	+	858.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 28 of 37)	intron (NM_172668, intron 28 of 37)	-31304.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	3.72195899717961	3.88741574749664	3.60836481647584	3.91952379048991	4.07470001878307	3.78408369662977	3.95269154458967	3.72044798331487	0.276197626587363	0.549076941406887	0.7978350470012
Merged-chr2-92434608-3	chr2	92434508	92434708	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009963)	promoter-TSS (NM_009963)	-539.0	NM_009963	12953.0	Mm.254181	NM_009963	ENSMUSG00000068742	Cry2	AV006279|D130054K12Rik	cryptochrome 2 (photolyase-like)	protein-coding	5.39651446700233	5.49670064681502	5.0316907031961	5.44326783945764	5.29458773572423	5.68086791967334	5.21818600746278	5.60590654012842	0.166052169147384	0.583505174611701	0.817182780593926
Merged-chr9-65561148-4	chr9	65561031	65561231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 3 of 5)	intron (NM_153119, intron 3 of 5)	18956.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	6.71936649601617	6.56629141592891	6.40383148186211	6.54245269297157	6.58732943489804	6.4485176913016	6.65812898537054	6.22601418919337	-0.0962955711416961	0.66369913097797	0.86071931720076
Merged-chr19-3384583-3	chr19	3384491	3384691	+	939.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013495, exon 19 of 19)	3' UTR (NM_013495, exon 19 of 19)	-4266.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	4.15309468159437	3.98311158212618	4.19858403180971	4.34620479308889	3.61247474555813	4.49288829465376	4.13521950405199	3.95470230850864	-0.259743163374772	0.582607799338165	0.81668109351953
Merged-chr19-29498104-4	chr19	29497996	29498196	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	23891.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	5.25747579739017	4.81610721074085	4.97280593365143	5.15082614878583	4.86388087033382	5.0751256505339	5.17447812972197	5.07188398240695	-0.0392048788110866	0.902560139108053	0.963848753135321
Merged-chr12-54844596-4	chr12	54844517	54844717	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18260.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	4.9945768472887	4.85870958811113	4.81971416842515	4.88484906265756	4.84900731353365	4.91692570458127	4.86960474190553	4.95886325299543	0.013310785854014	0.96640303333778	0.988139972127125
Merged-chr6-109940560-3	chr6	109940464	109940664	+	908.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-704948.0	NM_001346640	108073.0	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	3.81799729664418	3.81864242853795	3.97233087670666	4.24509281854795	4.24150928558875	3.88193302850822	3.90696563420443	3.92081446692635	0.037291489273593	0.935218939370072	0.97651865331782
Merged-chr17-42892157-3	chr17	42892058	42892258	+	805.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-15734.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	2.70962457093794	2.64128581820402	2.70987535055628	2.25103202561594	3.81540705885454	3.82791129045985	3.72174773193956	3.45566997237753	7.61667812331355	1.30840451690637e-14	1.9985177061991e-12
Merged-chr12-84193983-4	chr12	84193881	84194081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163502)	promoter-TSS (NM_001163502)	34.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	8.53138822966808	8.8021170102189	8.20251744952123	8.25901635025141	8.62845497449486	8.55364227904796	8.41503698062795	8.33205720837952	0.0246255332371041	0.896510797601549	0.961155518163813
Merged-chr14-14068045-5	chr14	14068010	14068210	+	855.679993	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139227, intron 4 of 11)	intron (NM_139227, intron 4 of 11)	52794.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	3.8266344596598	3.76162696815571	3.72558640359593	3.60575557472798	3.61187225445612	3.48018748620464	4.06858611890523	4.00509418043496	0.261224706137204	0.591879363898132	0.821848634889742
Merged-chr17-70755131-4	chr17	70755023	70755223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	91654.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	5.32207136113367	5.4568561327079	5.15405258485619	5.64671253509464	5.51398374211684	5.5896395778696	5.67425199034389	5.62690575909145	0.290385055169902	0.310357884290281	0.622543718356993
Merged-chr8-14627138-4	chr8	14627047	14627247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-261389.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	6.26866140865676	5.75685003041263	5.51309870265943	6.23833369179177	5.69027038167296	5.8931365780947	6.07283647761672	6.13851084692043	-0.0624551668887154	0.831755996406639	0.935610481814029
Merged-chr10-117731410-4	chr10	117731348	117731548	+	970.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	14910.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	4.70963033913566	4.97443618541396	4.54342705066916	4.56182662892432	4.75023700105	4.95873192569634	4.9019324576775	4.70731320736048	0.26313029695207	0.446902907957995	0.732575443506555
Merged-chr4-132947792-4	chr4	132947693	132947893	+	853.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25242.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	4.62446555729722	4.62402658710937	4.43484033359405	3.94076769234378	4.77079879623178	4.236714920809	4.14360633053622	4.05347639432088	-0.191827714855981	0.678726529965896	0.868137421912153
Merged-chr6-117881437-4	chr6	117881321	117881521	+	850.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER68|LTR|ERVL	18540.0	NM_001001792	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	3.96569541934089	3.76916424120054	4.01583015432816	3.95332747320817	4.33980394008902	4.13911851910272	4.09144525025456	4.06110054089233	0.634546200255398	0.127318388186384	0.396985962533672
Merged-chr13-111418216-4	chr13	111418098	111418298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	71929.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	5.14610129086787	5.09742342615808	5.43223716912675	5.61145292997743	5.17302295895446	5.39376022761404	5.37638426465475	6.04356948860209	0.323939871304519	0.34492546055251	0.653300542003711
Merged-chr11-73030999-4	chr11	73030916	73031116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018883, intron 9 of 15)	intron (NM_018883, intron 9 of 15)	12008.0	NM_018883	55984.0	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	5.99312142306642	5.38378188658987	5.24174881893035	5.73191715500138	5.52967018182303	5.48597461401832	5.34524525112707	5.59414777353661	-0.226383425516455	0.45509193081531	0.738746012503745
Merged-chr16-55757336-4	chr16	55757232	55757432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64806.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	6.92852214519934	6.70935934824512	6.91701275155998	6.79519225437288	6.99651010361331	6.88550908155622	6.64426196849748	6.54340743323626	-0.0671919630336528	0.751921650170011	0.902329068825205
Merged-chr11-67526744-4	chr11	67526641	67526841	+	993.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6257.0	NM_008088	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	5.20211691933512	5.05619637192868	5.16882283685841	4.89715407714654	5.76093112391702	5.64956098550447	5.67034187640321	5.64914240539672	1.10173930980403	6.90568355653069e-05	0.00148411730033303
Merged-chr1-77832384-4	chr1	77832288	77832488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-317300.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	8.09115842578054	7.70963188229264	8.10505877659375	8.2446966257896	8.05575061058558	7.84558277581506	8.24084322092802	7.93270431608341	-0.0357917404213241	0.850397261113257	0.943605803779211
Merged-chr4-53108447-4	chr4	53108347	53108547	+	943.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 6 of 49)	intron (NM_013454, intron 6 of 49)	51448.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	4.79683791037683	4.94057689026667	5.60853528894716	5.51581763971739	4.56351781313782	4.85149277290998	4.85289101408709	4.91048201936893	-0.927182384961153	0.0120351314475754	0.0901384691749506
Merged-chr6-16883708-4	chr6	16883612	16883812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 1 of 6)	MLT1D|LTR|ERVL-MaLR	14729.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	6.44473768057382	6.69311406702992	6.37738759870165	6.27484078292512	6.2229672214638	6.51739312375001	6.1561624095977	6.0083867190408	-0.321066159862649	0.18417445489319	0.481465899986865
Merged-chr13-55330483-2	chr13	55330390	55330590	+	745.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_016662)	promoter-TSS (NM_016662)	-760.0	NM_016662	17121.0	Mm.20350	NM_016662	ENSMUSG00000021485	Mxd3	4631412E13Rik|Mad3|bHLHc13	Max dimerization protein 3	protein-coding	4.15494380278606	4.36663037790763	3.66475758649581	3.86861006001603	4.18268544021397	4.18626643726708	4.41825854549856	4.05872874597912	0.459173993971936	0.30704985791956	0.619334608547937
Merged-chr8-70383503-4	chr8	70383406	70383606	+	839.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001004062, exon 14 of 14)	3' UTR (NM_001004062, exon 14 of 14)	9958.0	NM_016685	12845.0	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	3.94520238633537	4.17849128670369	3.66341370640571	3.74361626958489	4.187060192669	3.96164661277921	4.27862373560301	4.13210125844349	0.67725556646562	0.123916572402534	0.390666338995867
Merged-chr4-117139409-4	chr4	117139306	117139506	+	862.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-5443.0	NM_001313916	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	4.33230806646366	4.0338451206501	4.16841953292408	3.76900837970802	4.01237532625032	4.24933450339308	3.9113743516001	4.02682519557665	-0.0626897513661226	0.887670265877042	0.957837975902937
Merged-chr11-69410854-4	chr11	69410728	69410928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017426, intron 1 of 22)	CpG	2847.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	7.03835988052659	7.67789543510243	6.89147022772201	6.66639892209064	7.46894129447865	7.33798387295095	7.48213495412077	7.2446193105226	0.35739770057259	0.158202064628486	0.445101416370722
Merged-chr8-46551916-4	chr8	46551824	46552024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027973)	promoter-TSS (NM_027973)	-145.0	NM_027973	71876.0	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	9.04574030284901	9.18336774658278	9.11692270615598	9.07261587627409	8.9677993672811	9.05284421267271	9.00024955729019	8.8775531899738	-0.160984890243532	0.243729545161673	0.554723581731238
Merged-chr12-71006282-4	chr12	71006167	71006367	+	983.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045055, intron 3 of 3)	intron (NR_045055, intron 3 of 3)	9556.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	4.63414893358861	4.82543298256979	5.27754674174478	4.76353487174283	4.65875191925341	4.58845165243177	4.48296003796828	4.96166589230196	-0.427456184447377	0.2492335913383	0.560328612484111
Merged-chr10-81175188-4	chr10	81175104	81175304	+	979.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1427.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	5.12867782806661	4.67066875367415	4.958432967252	5.06589066129708	5.39200803996455	5.09749427300597	5.19618031001581	5.21850472982499	0.502342336652618	0.111043033265684	0.368157614938712
Merged-chr2-91921402-4	chr2	91921283	91921483	+	813.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007699)	promoter-TSS (NM_007699)	-806.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	4.4795589073856	3.8380171471006	3.89355484619745	3.95060080737611	3.79009856360436	4.16890749922805	3.97869891059491	3.99342477986278	-0.203756870165726	0.657903418753929	0.857579088863969
Merged-chr11-86734383-4	chr11	86734297	86734497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 2 of 31)	intron (NM_001003908, intron 2 of 31)	23170.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	5.80277397361308	5.95387827728255	5.80379894523922	5.09886460802947	5.96401599065603	5.97833773370261	5.62581318340219	5.6237972255946	0.201882963014973	0.522072265091406	0.781821472022301
Merged-chr15-79742152-4	chr15	79742054	79742254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045069)	promoter-TSS (NR_045069)	382.0	NM_194342	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	7.60401108025082	7.65500197793382	7.30065551054896	7.02102036381884	7.73492450523614	7.79077739880446	7.45328695185625	7.09763403606987	0.182195465333853	0.440713773184352	0.728102443168902
Merged-chr13-65242019-4	chr13	65241919	65242119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-36303.0	NM_175290	97895.0	Mm.315815	NM_175290	ENSMUSG00000032999	Nlrp4f	C330026N02Rik|C86045|Nalp-kappa|Nalp4f	NLR family, pyrin domain containing 4F	protein-coding	4.90202123878298	4.5366964740971	4.94046842514304	4.61325600127642	5.56154343953666	5.4387033011645	5.2108501637885	5.26260412384933	1.2212650247489	0.000115259076747913	0.00228397155452107
Merged-chr2-112394184-4	chr2	112394107	112394307	+	901.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024254, intron 1 of 9)	L2|LINE|L2	14996.0	NM_024254	72425.0	Mm.425091	NM_024254	ENSMUSG00000027132	Katnbl1	2410042D21Rik|AA166487|AA473307|AI467442	katanin p80 subunit B like 1	protein-coding	4.0252496426399	3.68641097587522	3.87725350686033	4.15521660954212	4.28582075335467	3.828580247027	3.86168744419145	4.15625751412679	0.260520735377443	0.5726032764452	0.811251013052168
Merged-chr4-114987291-4	chr4	114987193	114987393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025647)	promoter-TSS (NM_025647)	-65.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	6.69867545709785	6.97821523079873	6.29857740914155	6.9224718408075	7.17568394578152	7.10489414399992	7.29034941256808	6.93622491042802	0.513878570875532	0.0241097294837936	0.144917083466029
Merged-chr11-46779994-3	chr11	46779901	46780101	+	920.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_134248)	TTS (NM_134248)	28833.0	NM_134248	171283.0	Mm.17771	NM_134248	ENSMUSG00000040405	Havcr1	AI503787|KIM-1|TIM-1|Tim1|Timd1	hepatitis A virus cellular receptor 1	protein-coding	3.8424080084194	4.01172802443868	3.98709744900856	3.90281387891474	3.72885274248837	3.85664222493689	4.09729083495046	3.4269922733492	-0.395593665304251	0.407150188872553	0.703537361109727
Merged-chr17-84318685-3	chr17	84318566	84318766	+	904.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 28 of 37)	intron (NM_183021, intron 28 of 37)	-130719.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	3.11732542100925	3.39759717752171	3.36988481631064	3.57023095325141	3.52538605008806	3.36086132942722	3.51681938440836	3.47787010136986	0.292868934938702	0.581788375967581	0.816420227529328
Merged-chr18-34506200-7	chr18	34506056	34506256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146084, intron 1 of 20)	intron (NM_146084, intron 1 of 20)	667.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	4.31884544721312	4.71160248720145	5.03312846566567	4.87234879169139	5.03461297984355	5.1056832602681	4.87339844435224	5.26408721754131	0.609092905877412	0.0857983375370412	0.319038756010294
Merged-chr9-115309671-3	chr9	115309570	115309770	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024222, intron 1 of 15)	CpG	751.0	NM_024222	68292.0	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	5.15776794223427	5.03399557489601	4.95594738373027	4.8472861256068	5.23471247946455	4.93795807204899	5.16380437075431	5.35633346345597	0.37221939624791	0.231285571991531	0.540752717408527
Merged-chr5-99414502-4	chr5	99414388	99414588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-161561.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.60761637026012	6.98195974971835	6.87709652177221	6.92724831489296	6.38016295010604	6.31724607357642	6.29535459359127	6.66548666305387	-0.634265552938943	0.00382039212897508	0.0386486201461508
Merged-chr7-125541109-4	chr7	125540989	125541189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-11193.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	5.02554573631416	5.07360744080618	5.37600597097469	5.15560243822503	5.04961670536587	5.1297714417373	5.37624872486484	5.64514893366353	0.280277803624267	0.376456255777211	0.679183554569486
Merged-chr8-106556353-4	chr8	106556258	106556458	+	734.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007665, exon 16 of 16)	3' UTR (NM_007665, exon 16 of 16)	-30785.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	3.72417042989212	3.49403168831422	3.77617758724989	3.682002418203	4.00503295585302	3.67270292413816	3.94507051137899	3.77400852092309	0.570128193578214	0.21562624707371	0.521847629814001
Merged-chr13-95033203-4	chr13	95033120	95033320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172263, intron 16 of 19)	intron (NM_172263, intron 16 of 19)	56876.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	7.24397416057336	7.08920242800392	7.2452262718578	7.48449961716948	7.10478554112132	6.92417400881407	6.90013647391343	7.07084744350132	-0.378219156540686	0.0550082994700592	0.245107854827042
Merged-chr3-13561120-3	chr3	13561015	13561215	+	837.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357034, intron 1 of 7)	L1_Mus2|LINE|L1	88316.0	NM_001357036	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	3.35914303248782	3.19302968863495	3.35957456378723	3.59969480686507	3.25183734283137	3.4131711159579	3.69456207856885	3.35782928458654	0.134254759228764	0.804736846321178	0.924995726566622
Merged-chr4-9631230-3	chr4	9631131	9631331	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177856, intron 4 of 4)	intron (NM_001177856, intron 4 of 4)	12486.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	4.09954863598476	4.43658816179461	4.46184954911767	4.25155867126958	4.32870662962166	4.11582371473864	4.51666671158596	4.45894449693425	0.113208577177547	0.773220057756068	0.911211873289787
Merged-chr10-21425944-3	chr10	21425846	21426046	+	855.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48646.0	NM_178713	237320.0	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	2.71838810678473	2.7960419981814	2.71861487436253	2.71721393117762	3.60961145412765	3.69923761953389	3.14016581814645	3.61743047055573	3.25583757055585	1.96803043406913e-06	6.45838811740924e-05
Merged-chr7-128321361-4	chr7	128321259	128321459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23228.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	7.03462298089627	7.22024968308812	7.04827095905693	6.56128243266045	7.3944668227881	7.48104114076118	7.41007934251417	6.82830392099185	0.445873166394857	0.0626783014765432	0.265305591151217
Merged-chr5-74531768-4	chr5	74531676	74531876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178672)	promoter-TSS (NM_178672)	-34.0	NM_001114660	212986.0	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	7.61406500194306	7.71880429280569	7.49450669847499	7.75591259011603	8.02864662941048	7.95851422693639	7.84729582149134	7.77587151045138	0.328742418799817	0.054548934849094	0.243875298889747
Merged-chr13-20212866-4	chr13	20212775	20212975	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 4 of 21)	MIRb|SINE|MIR	122368.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.69914203104514	5.36298209533397	5.17457668666204	5.59879741853726	5.49307556789876	5.63946669502511	5.59783289225516	5.78811974778092	0.248020234323147	0.383400404286656	0.685301023974684
Merged-chr7-139247672-4	chr7	139247580	139247780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033206)	promoter-TSS (NM_001033206)	-802.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	5.04478655534337	5.34998558704338	6.09553759999708	5.58091054055819	5.23057469486601	5.53847388023812	5.42385476917495	5.86365204701017	-0.0752135617947537	0.828709734562565	0.93423605372953
Merged-chr5-103754085-4	chr5	103753993	103754193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080798)	promoter-TSS (NM_001080798)	-69.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	6.68948373477649	7.19298624157493	7.26009619995516	6.82671868509732	7.03991013364205	7.44696015711292	7.42439386171767	7.00238607813936	0.316087895050946	0.166934310822505	0.458425411484422
Merged-chr17-87561128-4	chr17	87561030	87561230	+	801.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74849.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	3.96134384979829	3.53680800665058	3.66783900592722	3.71036973587731	4.08617647612987	3.60718216117909	3.8071721999234	3.66584970312833	0.268739860369211	0.578448214136149	0.814701124579464
Merged-chr19-15537702-4	chr19	15537608	15537808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16D|LTR|ERVL	386914.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	8.30410428717908	8.1057474807365	8.36842875399696	8.21015856368266	8.0205866488539	7.90473484484209	7.79562941854387	8.04403405966123	-0.385209501156996	0.0186057408990461	0.122036309569959
Merged-chr10-128895633-4	chr10	128895527	128895727	+	790.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3909.0	NM_010272	14561.0	Mm.299218	NM_010272	ENSMUSG00000025352	Gdf11	BMP-11|Bmp11	growth differentiation factor 11	protein-coding	4.28347454575665	4.40476866843269	4.15089267947263	3.9730824599165	4.12791200134597	4.17812581661778	4.30566180662036	3.99998060121922	-0.115430599717848	0.781504845712383	0.914926993310043
Merged-chr1-58423098-4	chr1	58422986	58423186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042634, intron 1 of 12)	intron (NM_001042634, intron 1 of 12)	1002.0	NR_027854	12747.0	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	6.44007505882645	6.6586960494611	6.14670454907732	6.54647067790374	6.7643218328239	6.7018039548503	6.35486549345389	6.58504643679538	0.210442696944597	0.362774834990913	0.668010606126456
Merged-chr7-143094955-2	chr7	143094855	143095055	+	743.599976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020277)	promoter-TSS (NM_020277)	-313.0	NM_020277	56843.0	Mm.286668	NM_020277	ENSMUSG00000009246	Trpm5	9430099A16Rik|LTrpC-5|Ltrpc5|Mtr1	transient receptor potential cation channel, subfamily M, member 5	protein-coding	3.09739178052689	2.87801267598346	2.8193700875664	2.88955086132693	3.13078042546697	3.49781341192345	3.2607407580609	3.52147203781051	1.6951325798634	0.00345222884028719	0.0356566797551982
Merged-chr13-104611456-4	chr13	104611365	104611565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	205488.0	NM_026072	67285.0	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	5.64171311679892	5.49925365839737	5.53065929278653	5.95175308029541	5.95668789328284	5.84479930221938	5.96118075307603	5.74159839393449	0.311198849012351	0.25187082908834	0.563082161340582
Merged-chr7-132812021-3	chr7	132811926	132812126	+	874.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	1170.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	4.13101116839991	3.83817826965014	4.04405377747472	4.070029902445	3.88994762884015	3.53267201597029	3.77960738183996	4.24968929462375	-0.36865082648109	0.435980395877689	0.724943317639126
Merged-chr11-98829590-4	chr11	98829498	98829698	+	822.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138660, intron 11 of 13)	intron (NM_138660, intron 11 of 13)	-7187.0	NM_001080925	268480.0	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	4.19012112059846	3.93854220934781	3.91041315468685	4.16708273798991	4.13503535321733	3.97757025782904	3.94532209779389	4.00848874156893	-0.108229772139217	0.798196162309141	0.921955533143952
Merged-chr1-84465064-4	chr1	84464961	84465161	+	972.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 7 of 12)	intron (NM_152915, intron 7 of 12)	-180416.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	5.17125017325999	4.90518120793246	5.77447321084021	5.44762393301703	4.70838270578104	5.24817936055831	4.90070998706876	5.2616398659782	-0.598783068292782	0.096990709724848	0.341193126791784
Merged-chr3-144352798-2	chr3	144352698	144352898	+	688.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147543.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	3.23458333765002	3.01766269023586	3.12430475338776	3.10841821770883	3.12971926599807	2.90310136685646	3.22185312142528	3.00170741473202	-0.19318314754003	0.736685197572505	0.896044355400091
Merged-chr9-22366757-3	chr9	22366660	22366860	+	853.366699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028390, intron 8 of 23)	intron (NM_028390, intron 8 of 23)	22446.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	3.69256831852317	3.80883299345921	4.51382146014531	4.17278951415173	4.00346332405588	3.98502069306023	3.6794962492937	3.860620352233	-0.531916859273488	0.278606619925328	0.590822005054816
Merged-chr1-171463336-4	chr1	171463214	171463414	+	802.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172647, exon 10 of 10)	3' UTR (NM_172647, exon 10 of 10)	25753.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	3.69902391653623	3.86884531680208	3.52070078660557	3.60741621363281	3.66517817043551	3.76208206279768	4.14307571010877	4.16033719962817	0.772313589346091	0.104952920016944	0.356363301716647
Merged-chr2-4402137-1	chr2	4402037	4402237	+	701.0	f0_balb.idr	intron (NM_001177843, intron 1 of 23)	intron (NM_001177843, intron 1 of 23)	1161.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	3.55368535371959	3.42435265804268	3.50053872741129	3.68864358972241	3.80491525889994	3.30368130501171	3.43190892455487	3.44279266916648	-0.0964181288194525	0.854090566613797	0.945008271417317
Merged-chr8-13601283-4	chr8	13601192	13601392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 4 of 23)	L1MC|LINE|L1	-38831.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	5.36159256016409	5.55567592912881	5.71671928163097	5.74341877057283	5.5472751003225	5.40813280704553	5.51028929253983	5.82546279219803	-0.0529667657706904	0.849636182361316	0.943176062710257
Merged-chr12-108629748-4	chr12	108629654	108629854	+	985.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163395, intron 1 of 12)	RLTR14|LTR|ERV1	-5999.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	5.68090522368324	6.10132789512219	5.70749770971477	5.50169514123593	5.71331565864263	6.02508870860934	5.92871623613543	5.21698542646106	-0.0122578701930903	0.968455532184343	0.988694268692349
Merged-chr10-121739840-4	chr10	121739735	121739935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359720)	promoter-TSS (NM_001359720)	-95.0	NM_001359720	270802.0	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	7.2966795960311	7.27467812071659	7.47062235856915	7.33578930395898	6.90650023138044	7.10761908538881	6.9485570556126	7.34323936522514	-0.35831025646554	0.0663355703092099	0.274549340565138
Merged-chr7-45405235-4	chr7	45405158	45405358	+	925.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010596)	promoter-TSS (NM_010596)	-702.0	NM_010596	16495.0	Mm.12955	NM_010596	ENSMUSG00000038201	Kcna7	Kv1.7	potassium voltage-gated channel, shaker-related subfamily, member 7	protein-coding	4.14740438656862	3.97898132983243	3.65955756881141	4.14929506073729	4.26037152478939	4.36230749696586	3.93665313100766	4.31462246154904	0.560896011453182	0.204035008773212	0.507244798195929
Merged-chr11-75459326-4	chr11	75459244	75459444	+	953.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-2195.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	4.5340306262724	4.84983422898873	4.57719900772552	4.43981234591123	4.99315052610133	4.79174000290288	4.63640179233092	4.53187605805007	0.336844163745659	0.353474145825238	0.660273623806948
Merged-chr11-19979518-4	chr11	19979424	19979624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	55082.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	5.72219571967257	6.06476160982038	5.97074008141238	5.65571544841048	5.59464627073548	5.82226028144087	5.85607934247101	5.00825333594851	-0.411072318766472	0.185082252994758	0.482885894117172
Merged-chr5-114766692-4	chr5	114766624	114766824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077359, intron 3 of 18)	intron (NM_001077359, intron 3 of 18)	6767.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	5.15436606754483	5.21068135190152	4.89098152757079	4.9720893452217	4.6623018740525	5.02858262899949	4.86768726686285	4.88772509346856	-0.401517062381917	0.2191982213818	0.526701385711987
Merged-chr4-150210547-1	chr4	150210447	150210647	+	749.0	f0_balb.idr	Intergenic	Intergenic	-9412.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	3.4694887993204	3.49488361833542	3.65672779904737	3.46117716113373	2.87562279700498	2.86401361165968	2.8299685008943	3.41662822768917	-2.02544368004002	0.00248047821453187	0.0276044338386748
Merged-chr9-20973887-4	chr9	20973788	20973988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010333, intron 1 of 1)	intron (NM_010333, intron 1 of 1)	2905.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	7.09746185282913	6.93127824347765	6.84769700799467	7.2588656415745	6.55193765507919	6.90867645690545	6.91902065464505	6.89719583457484	-0.328833521690536	0.125168510205139	0.392687507570294
Merged-chr2-127070612-4	chr2	127070498	127070698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026678)	promoter-TSS (NM_026678)	-59.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	7.31765542894532	7.15127178397896	6.90975409720748	7.36220279457387	7.05289039219581	6.8783727966317	7.35947988959176	7.08475407191552	-0.135457515509261	0.518368689175815	0.779480280212488
Merged-chr14-30152298-4	chr14	30152177	30152377	+	990.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 8 of 46)	intron (NM_001083616, intron 8 of 46)	129644.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	5.38328697372752	5.69485986267309	5.26526445529293	5.03417141576908	5.27233570905601	5.55741527857381	5.03874039572467	5.19776883771688	-0.14312135553064	0.660204580201663	0.858753368191481
Merged-chr3-86604553-2	chr3	86604453	86604653	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077687, intron 40 of 50)	intron (NM_001077687, intron 40 of 50)	-56270.0	NM_011839	23937.0	Mm.389466	NM_011839	ENSMUSG00000057777	Mab21l2	-	mab-21-like 2 (C. elegans)	protein-coding	2.82445916069163	2.73178371740717	2.82480986480867	2.86086743298145	2.59147559840711	2.73134981909526	2.75289820381745	2.99460861247726	-0.193732367621932	0.761886331112846	0.90672517808069
Merged-chr7-141460830-4	chr7	141460757	141460957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025103)	promoter-TSS (NM_001025103)	-237.0	NM_001025103	213573.0	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	7.19966809536027	7.45070553863158	7.32002370168024	7.4691485993235	7.29224908652028	7.15552632040804	7.52594913164063	7.2294495763208	-0.0839368945444658	0.656618885335081	0.856740299527046
Merged-chr7-130012276-3	chr7	130012167	130012367	+	687.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50102.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	2.88896656218899	2.8960363137864	3.00625498081204	2.86877851201691	2.72973701867877	2.93369961531017	2.68416833102026	2.94755911928228	-0.40194573309292	0.515486355621507	0.777533445789008
Merged-chr5-45424374-1	chr5	45424274	45424474	+	745.0	f1_c57bl6.idr	promoter-TSS (NR_131933)	promoter-TSS (NR_131933)	26.0	NR_131933	52401.0	Mm.33854	NR_131933	ENSMUSG00000029092	D5Ertd615e	4930435H24Rik	DNA segment, Chr 5, ERATO Doi 615, expressed	ncRNA	3.14106761629282	3.36249440385684	3.972910602144	3.23377797316109	3.25756581450142	3.44859624002007	3.25996034894519	3.27017605415846	-0.53465457470529	0.361781117330768	0.667078158445891
Merged-chr1-131797349-3	chr1	131797266	131797466	+	941.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178079)	promoter-TSS (NM_178079)	-29.0	NM_178079	212933.0	Mm.23844	NM_178079	ENSMUSG00000042251	Pm20d1	4732466D17Rik|AI098026	peptidase M20 domain containing 1	protein-coding	3.88401727108349	4.3865407631451	4.16067989451688	4.33060941213823	3.57385481782569	3.43677621638537	3.64798940528873	3.93256265332009	-1.59612626274659	0.00120603616484599	0.0156279716325455
Merged-chr11-115692181-4	chr11	115692061	115692261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	7373.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	6.5553958733599	6.74626690095575	6.32706333011497	6.73295141913489	6.5806911932614	6.36237973734519	6.65989240897283	6.58372672035189	-0.0853654675986905	0.699083876777743	0.878624019192029
Merged-chr18-60752183-4	chr18	60752089	60752289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3524.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	6.39483894946371	6.43960777442667	6.85292477317686	7.39514951162481	6.21063593492288	6.14514764214196	6.45127999698768	6.53024735682029	-0.738802413730014	0.010782740466281	0.0833972273877449
Merged-chr8-41024420-4	chr8	41024342	41024542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015457)	TTS (NR_015457)	6974.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	5.6431219557333	5.24801435527184	5.72230599294569	5.90667561319757	5.89979776024201	5.82047045423273	5.74252213325101	6.17824023715591	0.414458721843508	0.149154621719498	0.431186614384377
Merged-chr12-86884134-4	chr12	86884050	86884250	+	929.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145836, exon 1 of 1)	5' UTR (NM_145836, exon 1 of 1)	664.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	4.40452155972397	4.55453309230914	4.61830955703373	4.39624157483115	4.70421554568443	4.82827618037058	4.55727891402192	4.72781541456061	0.47745040241797	0.170900489878259	0.464029218731436
Merged-chr7-114163107-4	chr7	114162955	114163155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-45274.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	4.45818034736422	4.72666784311123	5.02332243107799	4.45724754075048	5.63778305760816	5.23548493968878	5.64412750051357	5.46339792144389	1.59268187020921	1.11932910368765e-06	3.88268646546703e-05
Merged-chr17-23790599-3	chr17	23790495	23790695	+	796.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4379.0	NM_001357140	76917.0	Mm.269613	NM_029798	ENSMUSG00000023911	Flywch2	2810417J12Rik|3010014L17Rik|AW548203	FLYWCH family member 2	protein-coding	3.52330192238671	3.7552888126041	3.58104864751446	3.22970048244489	3.64377965922088	3.64151270956612	3.72311481429953	3.96316258635021	0.696580278250949	0.16542193881722	0.456078253822059
Merged-chr12-40018284-4	chr12	40018174	40018374	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCTCCC)n|Simple_repeat|Simple_repeat	19102.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	5.25133263980926	5.28768862802555	5.22148006133217	5.03948931105594	5.48181761733243	5.29926314567284	5.22624167300207	4.90212128605432	0.113323037744159	0.716054897749329	0.886371813543908
Merged-chr4-12171640-6	chr4	12171561	12171761	+	888.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310743, intron 1 of 7)	CpG	354.0	NM_001310743	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	3.79317357030996	3.74277665450397	4.31131910555585	3.9456966573237	3.67116772157582	3.67999840206555	3.66875878915743	4.07633855439567	-0.513942449856741	0.287392076998857	0.599170517814405
Merged-chr5-137072331-4	chr5	137072224	137072424	+	848.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008871)	promoter-TSS (NM_008871)	-52.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	4.09274413181518	4.52761319116791	4.19033894464819	4.43744876790853	4.23300626572554	4.49327088312621	3.86059315998277	4.09094925791232	-0.351628698447804	0.414457699362506	0.709044594374843
Merged-chr4-137993409-4	chr4	137993303	137993503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172703)	promoter-TSS (NM_172703)	-53.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	6.64551736756287	6.60449312917908	6.6623331787861	6.37017380138875	6.94149339710817	7.39909308518937	6.73276688449235	7.04433512798308	0.690165059040647	0.00240870530076601	0.0269743918507275
Merged-chr17-35241120-4	chr17	35241032	35241232	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019693)	promoter-TSS (NM_019693)	-614.0	NM_019693	53817.0	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	5.41216592100053	5.18091135487114	4.6155010701195	4.5484363560726	5.47342652880793	5.50521301878183	5.03321404220412	4.87182240686644	0.504478012715308	0.194466628754035	0.494891206434022
Merged-chr1-152808406-4	chr1	152808344	152808544	+	935.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 2 of 15)	intron (NM_010877, intron 2 of 15)	8291.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	4.17804212938796	4.48066072966501	4.27329980412546	3.75918423976916	4.53004157323536	4.03301436454877	4.46199921996977	4.69328193967741	0.629463156484951	0.156142680733627	0.442017175944115
Merged-chr15-100126885-4	chr15	100126786	100126986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 2 of 37)	intron (NM_001159361, intron 2 of 37)	-27510.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	5.68882315852677	5.20520698931534	5.17461398503282	5.61593569428437	5.35202028836522	5.28206942132445	5.66081727707276	5.75427614027563	0.127531967075751	0.679760739088532	0.86857902618052
Merged-chr12-32306591-4	chr12	32306491	32306691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-72198.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	6.09791887234755	6.48686683542804	6.14069865226419	6.09006936294471	6.54475106477879	6.02034553716185	6.29826649394865	5.96072754818565	0.0439706392636201	0.865918395803859	0.94975353634928
Merged-chr4-63557923-3	chr4	63557833	63558033	+	806.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356354)	promoter-TSS (NM_001356354)	-830.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	3.4781060178966	3.49228851571139	3.29956019062077	3.3038391184972	3.46476571919349	3.53690540074377	3.51888678878725	3.81665841904888	0.655534817157649	0.189333457547215	0.488240753999997
Merged-chr7-30412867-4	chr7	30412748	30412948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011662)	promoter-TSS (NM_011662)	-940.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	8.01492714046944	7.88739428752149	8.12312657974457	7.8748392424609	7.83681262573841	7.66227483992226	7.95141110147369	7.79668370738645	-0.201412909689635	0.232348974234384	0.541946192758711
Merged-chr2-157095457-5	chr2	157095271	157095471	+	905.994263	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177439, intron 5 of 5)	intron (NM_001177439, intron 5 of 5)	8316.0	NM_001177439	383766.0	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	4.13773252583027	4.09213719907262	4.09030036510253	3.75927494910409	4.48274405623651	4.21600143572291	4.02346203227462	4.4658713100193	0.770765585617935	0.0684102164300785	0.27933517641559
Merged-chr9-88728556-2	chr9	88728522	88728722	+	986.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007536, intron 1 of 1)	intron (NM_007536, intron 1 of 1)	3228.0	NM_007536	12047.0	Mm.378888	NM_007536	ENSMUSG00000099974	Bcl2a1d	A1-d	B cell leukemia/lymphoma 2 related protein A1d	protein-coding	3.22066456656748	3.2551037178903	3.49142293953159	2.71453366219996	3.21994107539317	3.14083962318904	3.61212109024736	3.09372232680074	0.302227111510391	0.634236590129615	0.845095562869841
Merged-chr4-126030896-4	chr4	126030820	126031020	+	841.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252651, intron 4 of 14)	intron (NM_001252651, intron 4 of 14)	6261.0	NM_001252651	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	4.35332054698991	3.94192526025979	3.7012787940783	3.7990397061236	4.05875156609389	3.55409785509585	4.17947974386049	4.23688775005141	0.177065579833484	0.720286272783857	0.888243884856927
Merged-chr16-37011720-4	chr16	37011601	37011801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159369)	promoter-TSS (NM_001159369)	-85.0	NM_029977	77782.0	Mm.259114	NM_029977	ENSMUSG00000034206	Polq	A430110D14Rik	polymerase (DNA directed), theta	protein-coding	6.45780483546767	6.7433415891214	6.21164030541798	6.35528935036022	6.57529834904609	6.6857617305871	6.68860442540398	6.48839789570026	0.225334418649783	0.316837023882208	0.628806427517404
Merged-chr10-34132148-6	chr10	34132035	34132235	+	744.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4163.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	3.62200192704428	3.81947484712633	3.34683977446998	3.08188898148439	3.68869461788722	3.39836675074173	3.45060020029844	3.3451592122299	-0.0388793587748332	0.945459478508531	0.980503536399195
Merged-chr1-152532900-2	chr1	152532800	152533000	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 13 of 17)	intron (NM_016846, intron 13 of 17)	92317.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	3.0360182289876	2.87902826004704	3.09367983815324	2.84960639842665	2.91858570637528	2.88504455920106	3.08137760158636	3.09195908363099	0.152107260521802	0.796276071603763	0.921086464404789
Merged-chr11-75587671-4	chr11	75587596	75587796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008850)	promoter-TSS (NM_008850)	-383.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	5.76640315073787	5.70182985424472	5.69397146348744	5.82870897082504	5.67792488015785	5.49445366126471	5.76156362479088	5.68995237857335	-0.15456126926796	0.545263950842909	0.795807410238889
Merged-chr13-52619695-4	chr13	52619636	52619836	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 3 of 13)	intron (NM_011518, intron 3 of 13)	22854.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	4.94438236233262	5.07528753942998	4.90807497123291	5.2126890588663	5.09323493988353	5.00767091989013	5.44728234431912	4.82733298643115	0.116167895353457	0.724874493005304	0.890528723156002
Merged-chr8-105384384-4	chr8	105384264	105384464	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301173, intron 15 of 15)	intron (NM_001301173, intron 15 of 15)	8983.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	4.75645746098392	4.71787770835084	5.09757780941718	4.72839042585231	5.17800373037101	4.67899477526056	4.77306447705933	4.86602372415993	0.154526465655238	0.657510600672331	0.857348630564516
Merged-chr11-11557319-3	chr11	11557217	11557417	+	836.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68051.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	3.83921841665774	3.86916222570383	3.20905203200707	3.67983609195213	3.70354694767696	3.5273778216657	3.6292446961681	3.69361841577328	-0.102338164877603	0.844045548308958	0.94088019607581
Merged-chr11-115929966-4	chr11	115929844	115930044	+	909.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130454, intron 2 of 18)	intron (NM_130454, intron 2 of 18)	3548.0	NM_130454	170472.0	Mm.379351	NM_130454	ENSMUSG00000020752	Recql5	RecQ5|Recq5b|Recql5b	RecQ protein-like 5	protein-coding	4.31497852808067	4.40396562626542	4.74443040257165	4.61916612354655	4.4104707192497	4.24168536380212	4.34191965662816	4.485967507372	-0.370484133638145	0.329587625329443	0.640940866163718
Merged-chr10-67748808-4	chr10	67748699	67748899	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163863.0	NM_178679	216049.0	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	5.02684606376748	4.95758326223761	5.12989946842259	5.63682476462767	5.265912017263	4.97489160357153	5.13692227407937	5.12640029543106	-0.19923199687251	0.559548091348877	0.80390920198861
Merged-chr10-84577402-4	chr10	84577285	84577485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146008, intron 1 of 9)	CpG	438.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	5.67004393127669	6.02226009160176	6.10055931197831	6.04859310863104	6.00463088157152	6.08017794911297	6.27308731310769	6.13599880793638	0.225501039066611	0.357204802596703	0.663417629328916
Merged-chr9-101045934-4	chr9	101045831	101046031	+	964.462524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16B2|LTR|ERVL	-11047.0	NM_025835	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	4.40428822207533	5.02399219143345	4.86038563758108	4.75421648341427	4.75225508095816	4.48546772928661	4.87101365176262	4.98916232282625	0.0139550421711429	0.969458453599324	0.989008244980025
Merged-chr4-119083011-4	chr4	119082918	119083118	+	852.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13907.0	NR_131914	433751.0	Mm.224312	NR_131914	ENSMUSG00000066060	Gm12866	-	predicted gene 12866	ncRNA	4.0076171872337	3.99813312718029	4.00817340966503	4.26836656247322	4.2750321231496	4.55866525358208	4.74970776796527	4.34315661852048	0.95201980842488	0.0216333226410351	0.134872407135521
Merged-chr15-73748387-6	chr15	73748315	73748515	+	888.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008975, exon 1 of 6)	5' UTR (NM_008975, exon 1 of 6)	389.0	NM_008975	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	4.30040607681569	4.00489145538436	3.89765687468159	4.0047091230399	3.88077335274742	4.12219882278988	3.8288180491669	4.09040349106374	-0.200909043426003	0.642773691466435	0.84935096784468
Merged-chr2-167352719-4	chr2	167352635	167352835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-3557.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	6.43774287581423	6.43272413740917	6.69518446666919	7.05071839075963	6.51560518250048	6.07532606311965	6.70355080454176	6.66110935849245	-0.261437084420457	0.316771969219589	0.628743667727529
Merged-chr4-53441324-4	chr4	53441221	53441421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133891, intron 1 of 15)	intron (NM_133891, intron 1 of 15)	908.0	NM_133891	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	4.92010812452635	5.33853034919993	5.3636010464114	4.81625015565409	4.86287249012439	5.20444683095117	5.00521560561985	5.21901235368312	-0.0888017544750819	0.793424220795542	0.920015355738468
Merged-chr3-83995538-4	chr3	83995424	83995624	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172681, intron 3 of 34)	intron (NM_172681, intron 3 of 34)	44637.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	4.94345411722418	5.39268255433203	5.60265017293035	4.87676342647979	5.03007105281382	4.60768129291008	5.02322711687586	4.46978240468686	-0.811727587966202	0.0357691550344141	0.187856023477795
Merged-chr10-111507152-3	chr10	111507067	111507267	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009344, exon 1 of 2)	exon (NM_009344, exon 1 of 2)	881.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	4.34481167273974	4.31981405378113	4.62679877058596	4.64120549874448	4.28426077491307	4.33038890488873	4.08243158929343	4.72716327974143	-0.284987952337284	0.481259765014892	0.756505967188181
Merged-chr7-100508837-4	chr7	100508735	100508935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153527, intron 3 of 7)	URR1B|DNA|hAT-Charlie	5980.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	6.58628352642532	6.61450761820963	6.76919697608926	6.72647725301624	6.80079303413595	6.79616444443801	6.55385623397413	6.8723239019248	0.118339875906716	0.561143364224346	0.804851502205657
Merged-chr2-153292625-6	chr2	153292533	153292733	+	983.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008444, intron 1 of 8)	intron (NM_008444, intron 1 of 8)	1217.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	4.30535679419017	4.78789728954954	4.35325910955423	4.58605308234783	4.54628297797553	4.81268374632438	4.33425043887285	4.35060183305019	-0.014432372473742	0.970437135329498	0.989436241028349
Merged-chr11-50378503-4	chr11	50378397	50378597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347487, intron 2 of 12)	CpG-1904	778.0	NM_001347487	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	6.81489186642684	7.01596830817131	6.57343891719011	6.57128228257963	6.95700289616649	7.05914549434539	6.50614413413681	6.7108539295342	0.107005520273135	0.644564348263179	0.850327972292185
Merged-chr6-145101162-3	chr6	145101125	145101325	+	931.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14411.0	NM_001281980	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	3.23766275948543	3.17674719471308	3.29504218767774	3.33007158758098	2.99684137210095	3.22676723642811	3.16725600409976	3.49814598120085	-0.127833831530813	0.819213744233259	0.930746026231085
Merged-chr1-179434935-4	chr1	179434809	179435009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	83132.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	6.40719187340638	6.16948924135759	6.17772505618955	6.27565227688096	6.68578185516964	6.4749893502178	6.53910035427374	6.68545963061275	0.506263904733367	0.0182476162508999	0.120419717886409
Merged-chr13-52533855-4	chr13	52533747	52533947	+	934.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3011.0	NM_001024474	68203.0	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	4.94825040556012	5.16517078851321	4.55614820117871	5.11421719092016	4.64239379978886	4.90323755729985	4.8561674273971	4.76440244498513	-0.385890460121801	0.268386220041844	0.580107684368438
Merged-chr13-37482237-3	chr13	37482144	37482344	+	629.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136899.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.04097517341197	3.15123146531315	2.92436228215959	2.81200106764754	2.9678565592123	2.96921581181973	2.64705293291625	2.79452780234487	-0.572301751841831	0.370530724591585	0.674751360956441
Merged-chr15-103340209-4	chr15	103340125	103340325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013866)	promoter-TSS (NM_013866)	-139.0	NM_013866	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	5.34139395998342	5.3667657412901	5.34231003400785	5.21953406132273	5.25732848998499	5.4559146679645	5.28616256243148	5.45136442438008	0.0887718972569426	0.752512478921184	0.902553434256667
Merged-chr10-117281682-4	chr10	117281583	117281783	+	934.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017372, intron 1 of 3)	intron (NM_017372, intron 1 of 3)	589.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	4.6483669879719	5.39053649457612	4.69065940638699	4.19077345723471	4.74984546167011	4.78517791306438	4.92474548240455	5.04219404576693	0.151658989204323	0.718656175738549	0.887629976798039
Merged-chr6-112739809-3	chr6	112739730	112739930	+	710.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 15 of 21)	intron (NM_080448, intron 15 of 21)	-43160.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	3.77636717257397	4.11580193107031	3.77687530003434	4.25835835330482	3.70593489818286	3.71889452159294	3.81524114675248	4.15180336070705	-0.430805616685887	0.368463817660635	0.672881085698395
Merged-chr1-57970096-4	chr1	57970016	57970216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027630)	promoter-TSS (NR_027630)	-32.0	NM_001159865	51960.0	Mm.339711	NM_030211	ENSMUSG00000054770	Kctd18	4932411A20Rik|6530404F10Rik	potassium channel tetramerisation domain containing 18	protein-coding	7.62622018830684	7.58721453956138	7.63600870835664	7.63934360380013	7.56458983322389	7.64109797924808	7.75684046611513	7.4491205111225	-0.0218412557678699	0.897553645253163	0.961755066043397
Merged-chr17-36257693-7	chr17	36257583	36257783	+	857.119019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026308, exon 2 of 5)	exon (NM_026308, exon 2 of 5)	163.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	3.77336841398007	3.58045703101549	3.67611017009386	3.55487084824081	3.71078947186823	3.37332506739879	3.44250152059044	3.81775707024474	-0.120275885117084	0.808844873335231	0.92615112212231
Merged-chr2-145881218-4	chr2	145881164	145881364	+	971.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 11 of 12)	intron (NM_028724, intron 11 of 12)	-21977.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	4.66394958581842	4.17925702955463	4.7037588896089	4.50836148721414	4.52904370499774	4.67379159410838	5.09877639866678	5.09348783360716	0.724454508876132	0.0583297913902284	0.253858527750845
Merged-chr7-19345284-6	chr7	19345132	19345332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127324, intron 1 of 6)	CpG	161.0	NM_007948	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	5.48242961578154	5.07327344835828	5.25997160082039	4.97352138236427	4.86112031161804	5.40353899763147	5.2031086854527	5.57771689368959	0.146141552062017	0.664416263901551	0.86098920325767
Merged-chr4-132035922-3	chr4	132035869	132036069	+	732.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	MTB_Mm|LTR|ERVL-MaLR	13109.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	3.97565618024127	3.50486171908093	3.58763519851262	3.28402428406442	3.40147905841153	3.91906012538956	3.62811029894163	3.84156149034721	0.321157449041551	0.54516789314483	0.795786194536872
Merged-chr14-71011135-4	chr14	71011056	71011256	+	944.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121049.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	4.95925936094988	4.70454629415047	4.60851257289894	4.78385459932026	4.51626547095165	4.65698370646268	4.80756525725807	4.178815707778	-0.457270851485359	0.220309971047284	0.52815976360831
Merged-chr4-19681705-4	chr4	19681592	19681792	+	806.491089	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_074090, intron 2 of 24)	intron (NR_074090, intron 2 of 24)	27312.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	3.51828187977466	3.72566591015097	4.09248284700591	3.97436577207121	3.71815116157128	3.50725211621854	3.38166367403153	3.7378874521534	-0.762863164008707	0.136422102805397	0.41091739052877
Merged-chr12-85476182-10	chr12	85476023	85476223	+	989.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010234, exon 4 of 4)	exon (NM_010234, exon 4 of 4)	2233.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	5.69081236565123	6.10230713401076	5.4315482249413	5.0514645245924	5.97768710760237	6.69673167357226	5.87754762801992	5.25736659868308	0.673274547949688	0.236062831578669	0.5460923750833
Merged-chr4-6227272-4	chr4	6227162	6227362	+	985.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	36157.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	5.0430923062335	4.88753261557309	5.40189775482717	5.2141412154477	5.58424827802276	5.42709068790908	5.58198583902135	5.60661150889351	0.712641232804269	0.0147730941496401	0.103681134734494
Merged-chr4-116169242-4	chr4	116169144	116169344	+	774.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1646.0	NM_133681	66805.0	Mm.45994	NM_133681	ENSMUSG00000028699	Tspan1	9030418M05Rik	tetraspanin 1	protein-coding	3.40015786263124	3.7406596943692	3.52964287356526	3.55179009806139	3.48998027593098	3.87778040608963	4.01604484000018	4.22538037551656	1.05997102231574	0.035729317952878	0.187738980986212
Merged-chr13-113871065-2	chr13	113870965	113871165	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	76557.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	2.96814890860785	2.62820824269726	3.24976932087158	2.80750491168459	2.79762793336761	3.14231379233202	3.01815047567053	3.14266428722588	0.422915811322627	0.512493852828405	0.775855557112548
Merged-chr12-52307790-4	chr12	52307698	52307898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 10 of 10)	intron (NM_029760, intron 10 of 10)	172811.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	7.00655764361987	6.79942548010326	7.4077417826048	7.52794713226938	7.23461553250412	6.95789338970524	7.66503322050826	7.40259662195899	0.153361992417813	0.535066956210835	0.789572503459381
Merged-chr17-87639450-3	chr17	87639372	87639572	+	818.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008532, intron 2 of 9)	intron (NM_008532, intron 2 of 9)	3493.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	3.70894842965779	3.70776311293584	3.34370881260251	3.59145819006659	3.35661062822497	3.32866859427747	3.44594088315861	3.21558670088727	-0.886401671712043	0.0914791744212987	0.330477397154424
Merged-chr13-41230499-4	chr13	41230395	41230595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-10092.0	NM_019423	54326.0	Mm.2567	NM_019423	ENSMUSG00000021364	Elovl2	AI317360|Ssc2	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	protein-coding	6.24328907905036	6.21381642823235	6.33832033403199	6.02979579237957	6.39646316213362	6.60074405959547	6.42596017779971	6.36944907367488	0.377263071120018	0.0911731387623215	0.329957944069722
Merged-chr12-4536699-4	chr12	4536607	4536807	+	937.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12594.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	5.00459488877811	4.71936971287243	4.54073981555259	4.60524810424165	4.53032454187177	4.62869537291534	4.78877353521017	4.62129154523932	-0.170900679260976	0.630835893227457	0.843092586117598
Merged-chr10-21997859-1	chr10	21997759	21997959	+	576.0	f0_c57.idr	intron (NM_011361, intron 9 of 11)	intron (NM_011361, intron 9 of 11)	3193.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	2.90364876931027	3.10358568499599	3.10297656208351	2.90945778006194	3.25486561917949	3.38994491474589	3.31452422640939	3.16155157890112	1.09303256470322	0.0478965675950536	0.225717014357013
Merged-chr3-90433621-4	chr3	90433541	90433741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145540)	promoter-TSS (NM_145540)	-5.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	9.05794113877338	8.88698615379193	9.03564388157036	8.84414588924471	8.78485413906611	9.09174213105047	9.12500678697094	8.88537115903288	0.0254019488957921	0.871432338831049	0.951627503185851
Merged-chr11-53898403-4	chr11	53898316	53898516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-6713.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	5.47714372909713	5.26865239084748	5.02339637367931	5.04550663029228	5.39991985304929	5.19996379790588	5.19951099942237	5.15792707330668	0.0830144221202805	0.786628685855916	0.917065649505172
Merged-chr2-172400114-4	chr2	172400006	172400206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 1 of 6)	L2c|LINE|L2	6312.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	7.57367739587563	7.82119279460424	7.08663043944088	7.32035726111323	7.88696437087189	7.82890693641079	7.57225801805622	7.23982248933844	0.238825528198339	0.306069145493389	0.618577918370025
Merged-chr18-74880205-4	chr18	74880080	74880280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	81083.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	6.02230027038431	5.69655538596986	6.06655944679837	6.25119593949344	6.21465807607996	6.1993852449764	6.30090440778204	6.18349171199904	0.286123654433578	0.248106374632302	0.559186294982657
Merged-chr15-83145723-4	chr15	83145615	83145815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 1 of 7)	intron (NM_001347082, intron 1 of 7)	3663.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	5.52595237190981	5.85581451506463	5.40666458971693	5.56090388708302	5.9280330269456	5.78556391814765	5.86730103091918	5.57912921102416	0.335259320823677	0.214138276412106	0.519788161034397
Merged-chr5-100616907-4	chr5	100616803	100617003	+	880.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44698.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	4.37888269113819	4.48641578323804	3.82608582447518	3.97009019216194	4.39403604837541	4.28297118879798	4.27547784094669	4.49388370843548	0.432434050219098	0.31019140158289	0.622350079580249
Merged-chr14-70159521-4	chr14	70159408	70159608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004155)	promoter-TSS (NM_001004155)	-6.0	NM_001004155	268759.0	Mm.12148	NM_001004155	ENSMUSG00000044551	9930012K11Rik	-	RIKEN cDNA 9930012K11 gene	protein-coding	5.62225881521449	5.52222981003639	5.42403746723564	5.66654553699339	5.84718553446225	5.99092804923752	5.67100495745749	5.50938598433256	0.329688814714945	0.222673319882013	0.530799204148754
Merged-chr13-37959459-4	chr13	37959364	37959564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34744.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	6.84404035630953	6.88031003705405	6.67200255636073	6.84995102058399	6.43959490672498	6.9802930674694	6.85013325716192	6.74231413869322	-0.0861261056009826	0.690429395521427	0.873936548713739
Merged-chr11-75532069-4	chr11	75531961	75532161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199283)	promoter-TSS (NM_001199283)	-51.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	6.58944430853606	6.14912981958278	5.95588097391369	6.14317446912945	6.11824721185337	6.28706638767872	5.99398355416202	6.20685754432393	-0.109773869689533	0.661901430762874	0.859638834344915
Merged-chr3-31091335-3	chr3	31091235	31091435	+	859.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3723.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	3.46273091031099	3.71347170773622	3.40104905125425	3.41253039983732	3.96729072776009	3.69677825823336	3.50931090653368	3.87333937746153	0.863014670482433	0.0787421646858174	0.303647473434478
Merged-chr14-47000596-4	chr14	47000507	47000707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163433)	promoter-TSS (NM_001163433)	-733.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	6.40307201376793	6.58988485688798	6.5725063915518	6.47454845294351	6.56648453118484	6.74804483216815	6.35343846286836	6.45248784499161	0.0391571748412584	0.855654109008421	0.945715901857588
Merged-chr8-11015801-4	chr8	11015658	11015858	+	945.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-7328.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	5.12298863152887	5.08719388931622	5.44539015796892	6.07550313763253	4.73730958024633	4.83365580463556	4.84418881642731	5.0166064842023	-1.23732645303518	0.000979025524375124	0.0132106270709947
Merged-chr6-136940176-4	chr6	136940059	136940259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301303)	promoter-TSS (NM_001301303)	-632.0	NM_001301303	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	6.80595808118151	6.48596391784841	6.47376593314754	6.76467977217356	6.95052605919113	7.0245674306651	7.19294219873431	6.63878134702125	0.44925149185077	0.043017343582862	0.211034090773203
Merged-chr9-65534740-3	chr9	65534646	65534846	+	926.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45341.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	3.58591298085804	3.95887247001758	3.64343623462746	3.32633057974643	3.80514120188646	3.64458079506633	3.7847320000954	4.0243267600711	0.54292111986861	0.27649085601077	0.588504895079849
Merged-chr7-145110842-4	chr7	145110749	145110949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97270.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	7.84042837045159	7.95465461078869	7.67493967559588	7.82298438086302	7.84360870437156	7.94248407841067	7.90350538992537	7.45730332784456	-0.0354988263617724	0.846524008335267	0.941954402290774
Merged-chr19-11912304-4	chr19	11912203	11912403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172635)	promoter-TSS (NM_172635)	-96.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	7.81816495199978	8.14789569667834	7.64934042479628	7.69011711161252	7.96727382602701	8.04154614740814	7.40543231393003	7.72798567904468	-0.0391905954523026	0.853257345585569	0.944746983813509
Merged-chr19-17276209-3	chr19	17276081	17276281	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	63324.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	4.10511075863315	3.98470444834093	4.10578948151685	2.48734619568445	6.87723853115148	6.92121552816776	6.98214918661886	7.12169261697534	8.81029591189693	9.36948686982979e-37	2.1513248577665e-33
Merged-chr14-63411165-4	chr14	63411057	63411257	+	940.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	6030.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	5.44378159643694	5.01971289994626	5.96074843770015	6.35975751810211	4.79761837673767	5.12752410700352	4.79243885440454	4.97979060028796	-1.57464058032269	5.11032556613667e-05	0.00115292508232026
Merged-chr3-47885655-3	chr3	47885555	47885755	+	981.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141104.0	NR_040408	666202.0	Mm.465057	NR_040408	ENSMUSG00000103257	Gm7977	EG666202	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide pseudogene	pseudo	4.26319734505403	3.59641418028874	4.69439826030788	4.34297757106439	3.64753667309947	3.79545062086519	3.31305067831339	3.89766485068381	-1.66195551001015	0.00328957630502001	0.0342924358252811
Merged-chr13-55465976-4	chr13	55465827	55466027	+	811.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001030296, intron 1 of 2)	intron (NM_001030296, intron 1 of 2)	1660.0	NM_001030296	432763.0	Mm.315457	NM_001030296	ENSMUSG00000034686	Prr7	XM_484263	proline rich 7 (synaptic)	protein-coding	4.01959899896695	3.33627705030219	3.79085301745462	3.20714438393936	3.86985275674598	4.01163982822409	3.61618295246884	3.78854380740993	0.608577810083446	0.261469657543079	0.573409395639117
Merged-chr14-65343745-4	chr14	65343604	65343804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-14972.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	8.38762573806129	8.50286095971044	8.73434340613824	8.44159048197722	8.23649716760953	8.44999550992843	8.43185563020802	8.23141654417887	-0.230202891357722	0.159104728199195	0.446372450770191
Merged-chr8-12755516-3	chr8	12755421	12755621	+	827.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1495.0	NM_015804	50770.0	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	3.77462532599049	3.49412089258317	3.35014564361614	3.46224180147626	3.47929087653141	3.58480515308063	3.71341611435499	3.57829743448749	0.207630247581214	0.674809906608243	0.866336495905131
Merged-chr18-70622549-4	chr18	70622456	70622656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010773, intron 5 of 6)	intron (NM_010773, intron 5 of 6)	54264.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	7.978395185751	7.77067301658932	8.2388181786505	8.02697795406863	8.00267919115163	8.12929067098536	7.94832169187332	7.87437905813144	-0.0276732807308248	0.874703496006321	0.952925927223413
Merged-chr14-25461259-8	chr14	25461050	25461250	+	960.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	1965.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	4.96409978815115	4.35577983410529	4.46650959203183	4.30196369805995	4.48619094326798	4.35739971374916	4.84941490469362	4.62702060133183	0.120704906732903	0.762743624175689	0.907011913026374
Merged-chr15-102247730-4	chr15	102247659	102247859	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011244, intron 3 of 9)	CpG	-1259.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	5.42377109878132	5.82447164743265	5.27136441988494	5.21182994570231	5.47154287879352	5.62751697831571	5.338915387433	5.47737521216152	0.055868456620492	0.853200808387857	0.944721799522858
Merged-chr3-130709716-4	chr3	130709605	130709805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025509)	promoter-TSS (NM_025509)	-261.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	6.51770935700025	6.61188800866353	6.24158582158087	6.27507840380589	6.61835232919938	6.49927514346188	6.82982769138464	6.83442052026056	0.417806797636365	0.0610656012744533	0.26121324718235
Merged-chr16-57902726-4	chr16	57902625	57902825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147988.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	7.04970449595827	6.95682434396935	7.36182228027133	7.25318279319258	6.88891379649723	6.89579007287307	7.2375946500174	7.05811460239102	-0.196909543165289	0.336389827663403	0.646407648662756
Merged-chr3-61400760-2	chr3	61400660	61400860	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36253.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	2.58778645086493	2.44170592207838	2.58814446857405	2.34443259114092	2.46161475770232	2.35619996868761	2.32286034265671	2.3282832509701	-0.672793487093304	0.355708325539769	0.66241857839975
Merged-chr3-116513088-4	chr3	116512983	116513183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357344)	promoter-TSS (NM_001357344)	13.0	NM_010022	13171.0	Mm.3636	NM_010022	ENSMUSG00000000340	Dbt	BCKAD-E2|D3Wsu60e	dihydrolipoamide branched chain transacylase E2	protein-coding	6.73582794777634	6.78039151615994	6.66166790323517	6.88827643915116	6.4041571104146	6.54463602371379	7.40670777992877	6.57682230997033	0.0358014041334323	0.895145342904209	0.960758019882667
Merged-chr10-59578236-4	chr10	59578125	59578325	+	920.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033259, intron 1 of 7)	intron (NM_001033259, intron 1 of 7)	38467.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	4.48357197860772	4.60656862480436	4.68374442478103	4.7495328315049	4.43702301336956	4.61519619857019	4.28089561025142	4.78662691722526	-0.228769948968972	0.534849470755607	0.789425619054709
Merged-chr16-17070157-4	chr16	17070049	17070249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291053)	promoter-TSS (NM_001291053)	10.0	NM_001291047	106369.0	Mm.237941	NM_023249	ENSMUSG00000022773	Ypel1	0610009L05Rik|1700016N17Rik|1700019O22Rik|4921520K19Rik|4930511F14Rik|AV118478|DGL-1|Dgl1|Ppil2|mdgl-1	yippee like 1	protein-coding	6.19246477172365	6.01629073163091	6.07744767441163	6.39985022913041	5.7150625051747	5.8533352388013	5.89659972023017	5.69841869388714	-0.641751084972058	0.0102971286342901	0.080658008040072
Merged-chr4-154928995-4	chr4	154928885	154929085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178931)	promoter-TSS (NM_178931)	-908.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	5.71198410586295	5.83907063339111	5.34056881589396	5.28953304584494	6.11357674001505	5.64472378658234	5.77897282896139	5.78127726370552	0.491500898716168	0.0918885763356982	0.331518930254887
Merged-chr8-4258406-4	chr8	4258311	4258511	+	955.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183315, exon 2 of 2)	exon (NM_183315, exon 2 of 2)	863.0	NM_183315	330695.0	Mm.34210	NM_183315	ENSMUSG00000048644	Ctxn1	BC028881|Ctxn	cortexin 1	protein-coding	4.75408524126437	5.04476936096377	4.57679185559023	4.72872869374269	5.32850370221345	5.0128839020686	5.51056460326232	5.04817014304939	0.883613229755242	0.00793795997071708	0.066868983784411
Merged-chr19-11324252-4	chr19	11324168	11324368	+	778.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027836, intron 5 of 6)	intron (NM_027836, intron 5 of 6)	10427.0	NM_001276398	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	3.56572241682277	3.86455176928301	3.6761250029613	3.8597803589018	3.94162131977205	3.79374861380439	3.37123935919385	3.44456970082376	-0.254377134181304	0.622294615314864	0.83831156940409
Merged-chr6-50306838-4	chr6	50306751	50306951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027881, intron 18 of 21)	intron (NM_027881, intron 18 of 21)	-45082.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	6.07470967771352	5.93701350169982	5.84752388983131	6.46785561376837	6.11521510765627	6.02487662441863	6.02380728278395	6.19079540826568	-0.0571371413499049	0.82833944983756	0.934164461367054
Merged-chr3-88137670-3	chr3	88137497	88137697	+	825.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4775.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	2.42706668626793	2.41462230512884	2.35481686673053	2.10407721968461	2.45407285459079	2.67021511972084	2.55181773874877	2.73867529729363	1.62479231451803	0.0270511644695663	0.156460518891458
Merged-chr8-122474023-4	chr8	122473918	122474118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033142, intron 1 of 5)	intron (NM_001033142, intron 1 of 5)	2046.0	NM_001033142	68718.0	Mm.34356	NM_001033142	ENSMUSG00000014470	Rnf166	1110031E24Rik|AW555115|Zfp313l	ring finger protein 166	protein-coding	7.52094325557567	7.11876040012312	7.30428021962424	7.31037845030082	6.43959060086087	6.88343353212225	6.94183300471376	6.8786611737477	-0.731583425009986	0.000641261246105719	0.00941314378976262
Merged-chr11-57524821-3	chr11	57524708	57524908	+	918.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145426, intron 1 of 2)	intron (NM_145426, intron 1 of 2)	6143.0	NM_145426	216760.0	Mm.30501	NM_145426	ENSMUSG00000020522	Mfap3	2610509F16Rik|2700079M14Rik|AW536327	microfibrillar-associated protein 3	protein-coding	3.65149568167729	3.68063631102119	3.48853160090651	4.08189067405721	3.18349702006149	3.3466771796409	3.73403254983503	3.48670645660992	-0.992202334125388	0.0728728871823967	0.290410348623023
Merged-chr5-100750789-4	chr5	100750689	100750889	+	907.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31073.0	NM_152803	15442.0	Mm.265786	NM_152803	ENSMUSG00000035273	Hpse	HSE1|Hpa|Hpr1	heparanase	protein-coding	4.70244105902664	4.76535662365648	5.3317143270334	5.23335636717523	4.48305632526836	4.46241176231701	4.50928744098064	5.11308521744432	-0.7588147083083	0.0545932311561297	0.243996709811764
Merged-chr12-85343747-2	chr12	85343647	85343847	+	961.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 4 of 4)	PB1D10|SINE|Alu	-4385.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	2.43776241693708	2.48256498856602	2.36398967374745	1.98423513878715	2.42493188151131	2.81192655502171	2.5651265380867	2.75584495045275	1.74019282053086	0.0367636553013324	0.190951563097894
Merged-chr1-181150945-4	chr1	181150834	181151034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030131)	promoter-TSS (NM_030131)	3.0	NM_030131	98417.0	Mm.38229	NM_030131	ENSMUSG00000062169	Cnih4	AI647760|AW050376|CNIH-4|D530030D03Rik|E430023H19Rik|HSPC163	cornichon family AMPA receptor auxiliary protein 4	protein-coding	6.04969688777086	5.64220353416166	5.40157370598659	6.0000396918162	5.98999297605234	6.20453736112479	6.20703833387412	5.80039438593464	0.391457308194021	0.162890089463544	0.452408197190121
Merged-chr7-92884571-4	chr7	92884465	92884665	+	834.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	intron (NM_028243, intron 1 of 8)	9312.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	4.59296978478945	4.20779424946084	4.34154035541801	4.57637808203071	4.68176489406074	4.76375579029829	4.3677169237441	4.38443847409715	0.262005237912989	0.494629929706282	0.765224301099017
Merged-chr5-105138336-4	chr5	105138245	105138445	+	937.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008620, intron 1 of 10)	intron (NM_008620, intron 1 of 10)	1241.0	NM_001256005	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	4.72377822327142	4.5830920275448	4.89702080953175	4.42358468885492	4.95579423246027	4.56653334971916	4.58719550354851	4.4781028099151	0.0421445879069146	0.9106205053522	0.966726180504478
Merged-chr2-68873280-4	chr2	68873191	68873391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	11850.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	6.2171718338768	6.61693130477869	6.45509381503875	6.50288825804777	6.28475600401867	6.29085256816622	6.14652583435458	6.39967214755331	-0.268007199615888	0.232960008067122	0.542529132777439
Merged-chr8-113635384-4	chr8	113635265	113635465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173015)	promoter-TSS (NM_173015)	-221.0	NM_001048143	270096.0	Mm.74689	NM_173015	ENSMUSG00000078908	Mon1b	5031407H10|5033413H12Rik	MON1 homolog B, secretory traffciking associated	protein-coding	9.27790057337423	9.56029595680804	9.58012913533848	9.48819936301135	9.46304114186329	9.55573653640168	9.61063710992189	9.27367755631748	-0.00118581747237353	0.993783139738353	0.997702270136287
Merged-chr18-78142845-4	chr18	78142756	78142956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171011)	promoter-TSS (NM_001171011)	-737.0	NM_001171011	108052.0	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	7.70476232288049	7.4860341926245	8.09229556841344	8.06090821117381	7.71100823824955	7.49113787234056	7.97279251749339	7.5708800346215	-0.212866760054792	0.316033564772875	0.627859582085757
Merged-chr9-105408233-3	chr9	105408148	105408348	+	905.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	7460.0	NM_001164828	66595.0	Mm.84941	NM_025651	ENSMUSG00000032567	Aste1	1100001A21Rik|AV006403	asteroid homolog 1	protein-coding	3.45190167214508	3.40294568876202	3.29600743731344	3.19296713535164	4.45803538330619	4.45371258562861	4.57906590462613	4.72163840030836	3.50335677766865	4.17442687788001e-13	4.83927574496126e-11
Merged-chr8-105121153-4	chr8	105121054	105121254	+	873.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10646.0	NM_146213	234677.0	Mm.120297	NM_146213	ENSMUSG00000060560	Ces4a	Ces8	carboxylesterase 4A	protein-coding	4.20293740981976	4.26356613818439	4.15594761247147	4.03986887161865	4.45017072073659	4.28199232111322	4.13822554220353	4.56394499452449	0.520892257874677	0.185712057621638	0.483585287292957
Merged-chr6-40576007-4	chr6	40575919	40576119	+	962.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021364, exon 6 of 6)	3' UTR (NM_021364, exon 6 of 6)	4631.0	NM_146383	258381.0	Mm.377469	NM_146383	ENSMUSG00000045514	Olfr460	MOR120-2	olfactory receptor 460	protein-coding	4.4855925025339	4.69453366755611	5.38383571629625	5.08546127586467	4.58230815821065	4.61954170126102	4.67816490853245	4.43625026865214	-0.792780319192451	0.0417174759102772	0.206869737900071
Merged-chr19-5807924-4	chr19	5807825	5808025	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5253.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	5.17120987593275	5.1477316592225	5.04062957206467	5.02507738892956	4.8138868994956	5.21517569160485	5.14658538846123	5.34292628796132	0.074692227631534	0.812991305269907	0.927731304883839
Merged-chr2-127322745-4	chr2	127322658	127322858	+	894.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13401.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	3.96083059351312	4.16941566792088	4.39389664953495	4.06164289502901	4.48332426767627	4.34621040243461	4.41335736774868	4.47007715567647	0.68636319345677	0.0767751988982805	0.299505748239653
Merged-chr7-16950318-4	chr7	16950240	16950440	+	878.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5658.0	NM_001099636	434128.0	Mm.483018	NM_001099636	ENSMUSG00000070802	Pnmal2	EG434128	PNMA-like 2	protein-coding	4.29475571933814	4.16126142477216	4.46327417890385	4.25312659780901	4.26336302383997	4.06184112790563	4.62142673390755	4.57204940618089	0.252711301642831	0.529314828941655	0.78558977896199
Merged-chr10-84554645-4	chr10	84554557	84554757	+	896.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1319.0	NR_040658	442847.0	Mm.128292	NR_040658	ENSMUSG00000097076	Platr7	C330046G13Rik	pluripotency associated transcript 7	ncRNA	4.48291452055815	4.48811523767831	4.66689143752079	4.71109257351731	4.13226779051306	3.95456751498269	4.25058986268059	4.26659607467325	-1.06125878337804	0.00689444655757139	0.0602208628692323
Merged-chr3-36552601-4	chr3	36552494	36552694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019393)	promoter-TSS (NM_019393)	-12.0	NM_019393	50911.0	Mm.116711	NM_019393	ENSMUSG00000027714	Exosc9	PM/Scl-75|Pmscl1|RRP45|p5|p6	exosome component 9	protein-coding	6.85943236408681	6.51207636607134	6.44114911938937	6.92108985363673	6.90950554423418	6.8525163602444	6.62662237391849	6.84249994775168	0.144476280596371	0.517287572819097	0.778803651723338
Merged-chr6-135065508-4	chr6	135065392	135065592	+	977.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181444)	promoter-TSS (NM_181444)	-170.0	NM_181444	232431.0	Mm.23575	NM_181444	ENSMUSG00000046733	Gprc5a	Rai3|Raig1	G protein-coupled receptor, family C, group 5, member A	protein-coding	4.67464662722438	5.09296239605219	4.94090225845375	5.42803820754827	4.01958593115006	4.7686175050875	4.98281436317984	4.9028199923524	-0.716244690805321	0.0934499789723738	0.334349554090817
Merged-chr18-65691602-4	chr18	65691500	65691700	+	963.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6668.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	5.28869072529321	5.0412716164782	5.55538751979022	6.17467423681393	4.62439586337999	4.74448077949549	4.96691804576601	4.91126857159334	-1.47709796439923	0.000114454761564359	0.00227188263260083
Merged-chr10-34194700-4	chr10	34194616	34194816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	12835.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	4.99294118937094	5.72202295056324	5.43793166735484	5.37242206368408	5.47007809171147	5.82301120835946	5.54661641541457	5.51794698192907	0.312669633407237	0.300620916287536	0.612505973963948
Merged-chr4-103039961-3	chr4	103039866	103040066	+	795.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146254, intron 16 of 16)	intron (NM_146254, intron 16 of 16)	-13124.0	NM_001290648	23919.0	Mm.100163	NM_011831	ENSMUSG00000066090	Insl5	RIF2	insulin-like 5	protein-coding	3.88743960110464	3.69092031599577	3.88802157114578	4.06157963420721	3.56184728969014	3.7463374510967	3.61545578145203	3.78839218374416	-0.665851220159237	0.154953007817905	0.440400900154555
Merged-chr6-128786605-2	chr6	128786505	128786705	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159904, intron 1 of 5)	Tigger7|DNA|TcMar-Tigger	2036.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	2.01159948502563	1.97361597594756	2.01174041854789	1.78363002341718	2.56884964799717	2.50397861769433	2.56695974275201	2.63425403620459	6.50554773185414	1.155898475638e-09	7.36577418061208e-08
Merged-chr5-110639711-3	chr5	110639608	110639808	+	657.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13674.0	NM_153570	100608.0	Mm.29960	NM_153570	ENSMUSG00000033294	Noc4l	AI326906	NOC4 like	protein-coding	3.22577830229107	3.42967222413373	3.33940142555457	2.90996913321593	3.12701263520567	3.45475580631055	3.09181915226872	3.22449071758828	-0.0163737470910124	0.977592450393987	0.991939645680407
Merged-chr2-91922971-2	chr2	91922871	91923071	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007699, intron 1 of 1)	intron (NM_007699, intron 1 of 1)	782.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	2.70636922787426	2.7085259928266	2.98165616822032	2.85841046467446	3.14251513292751	3.21294356107873	2.97087251949414	3.30718136717962	1.42215269220702	0.0191913013393736	0.124409620950389
Merged-chr6-83660521-3	chr6	83660414	83660614	+	915.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4398.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	3.7082152939363	3.50264081974081	4.64796536261465	4.482423518717	3.04206099220908	3.0774368876689	3.03233222873121	3.1216096413694	-4.46519777279412	1.15825844208605e-07	4.90736176483588e-06
Merged-chr5-104958380-4	chr5	104958277	104958477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030239, intron 10 of 15)	intron (NM_030239, intron 10 of 15)	24340.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	7.62326659866106	7.7227427037828	8.031642591206	7.70595569003349	7.66241523135633	8.01827260996088	7.38910367674767	7.76762537696201	-0.0675111528796319	0.736265320277725	0.895944255036988
Merged-chr8-41298548-4	chr8	41298446	41298646	+	950.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 22 of 37)	L1MA5A|LINE|L1	58787.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	4.55770608285961	5.12271588408824	4.74228709420855	4.90279912927803	5.52811432068327	5.37981779018521	4.84226241235315	5.39758966738835	0.870191916292284	0.0123964576858209	0.0918941326410173
Merged-chr19-4295572-4	chr19	4295449	4295649	+	965.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	10673.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	4.87977746214438	4.93991998690977	4.63693562790006	4.23504503650272	4.57408869131817	4.60528492208404	4.45297381684094	4.17927646182274	-0.49806697263964	0.225318158280185	0.533672340883311
Merged-chr13-20311792-4	chr13	20311689	20311889	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 13 of 21)	intron (NM_080288, intron 13 of 21)	-161201.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	4.34107820893994	4.15825514729887	4.25784094739378	4.21167596535099	4.14343765212932	4.0338147190447	4.28100430110141	4.21111019960178	-0.174402143864889	0.658522022975794	0.857904281262009
Merged-chr13-69534826-4	chr13	69534735	69534935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001169131)	promoter-TSS (NM_001169131)	-971.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	8.72478620042219	8.54169425775953	8.51085184880642	8.6817295453637	8.78442614044461	8.75677483562463	8.79502726178186	8.69082280186471	0.172873700447536	0.235249905240262	0.545207351410163
Merged-chr10-42903266-3	chr10	42903145	42903345	+	803.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359265, intron 1 of 6)	intron (NM_001359265, intron 1 of 6)	42733.0	NM_001359264	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	3.50735225707922	3.56315139870671	3.80387154231257	3.7330732026441	3.26484303010851	3.15956791085699	3.69641904233697	3.50591634277865	-0.790123850694196	0.141151535383459	0.41796427061566
Merged-chr5-34536060-4	chr5	34535959	34536159	+	987.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	-7306.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	5.59498811159038	5.44189250968637	5.52016903874536	4.93421336186925	5.26624793456662	5.69287425714373	5.20273855584416	5.25720398856884	-0.0262765921960112	0.936131121554139	0.976869657372429
Merged-chr8-95140988-6	chr8	95140914	95141114	+	987.3110960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010631, intron 1 of 19)	intron (NM_010631, intron 1 of 19)	1526.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	2.67487095574562	2.5850144946925	2.7355898091119	2.57101877696456	2.40751001496375	2.71748696243904	2.53744927563547	2.61062510633367	-0.374878721978335	0.579406075072597	0.815357109114363
Merged-chr2-32846243-5	chr2	32846158	32846358	+	888.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113569, intron 1 of 19)	CpG	974.0	NM_009295	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	3.65336322535413	3.87596673393311	3.95858957061144	3.71916032831094	3.91138174244122	3.65035591967544	3.89564285260294	3.86252514389187	0.106707480903516	0.813459910103505	0.927860246162162
Merged-chr12-89291436-4	chr12	89291330	89291530	+	677.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198587, intron 7 of 19)	intron (NM_001198587, intron 7 of 19)	338040.0	NM_172544	18191.0	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	3.50546521310001	3.49197727403142	3.56476530154896	3.69644594842014	3.7824759234774	3.79315407273449	3.8977070676135	3.77454470232669	0.704488946479431	0.130599555454809	0.40224776104361
Merged-chr12-54969246-4	chr12	54969135	54969335	+	884.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 3 of 26)	intron (NM_013815, intron 3 of 26)	17101.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	3.67701668580543	4.05892307781636	4.13813963265585	4.25130444920985	4.5762451315347	4.35952756782124	4.2999944308104	4.5123751863294	0.922860955309253	0.0316535575018598	0.173484354066276
Merged-chr18-62478273-3	chr18	62478205	62478405	+	799.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65547.0	NM_001361091	107035.0	Mm.21295	NM_134136	ENSMUSG00000042211	Fbxo38	6030410I24Rik|AU044865|AW214031|Moka|SP329	F-box protein 38	protein-coding	3.23983855009293	3.05703676688856	3.15554217226428	2.43288514893205	4.51169762284598	4.53267029841045	4.5722329863908	4.74336212826865	7.85697752075314	1.25578296615879e-18	3.49161624016472e-16
Merged-chr4-45097689-4	chr4	45097574	45097774	+	681.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10439.0	NM_001134646	68512.0	Mm.282081	NM_001099675	ENSMUSG00000078713	Tomm5	1110019J04Rik|Tom5	translocase of outer mitochondrial membrane 5	protein-coding	3.68207926766544	3.28123025586894	3.88109233332976	3.46888713385814	3.86346583342068	3.68905329686835	3.71951922758797	4.00926414705283	0.723227195605635	0.145078640169797	0.424384684529075
Merged-chr2-10351330-3	chr2	10351248	10351448	+	856.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19103.0	NM_001198808	353282.0	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding	2.89400250181227	2.94902150851738	3.11990897480104	3.06388989573047	2.52265131281321	2.9390938928751	2.82173455382697	2.69406582414144	-1.25484828569264	0.0603377556065067	0.259461527475355
Merged-chr4-114909012-4	chr4	114908910	114909110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008593)	promoter-TSS (NM_008593)	-112.0	NM_008593	17301.0	Mm.7997	NM_008593	ENSMUSG00000055210	Foxd2	AI426778|Mf2	forkhead box D2	protein-coding	6.57906643524161	6.58377266042263	6.2243930959621	6.61844394127644	6.83696096369918	6.85096913397068	6.97004096288396	6.87854559448886	0.515780402085275	0.0134787347831006	0.0974210868324857
Merged-chr2-167588910-4	chr2	167588808	167589008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43097.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	7.3381218477436	7.67518505900744	8.01444285554062	7.88143004607894	7.55355348004646	7.20534186299172	7.38506290085154	7.46560971139161	-0.452214653231731	0.0293966297133987	0.165030578623709
Merged-chr18-64527467-4	chr18	64527354	64527554	+	997.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10897.0	NM_001142950	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	5.51422769950841	5.16043301716723	5.07179427258646	5.44748819385602	5.23320952062217	5.02058262236222	5.35706882628267	5.17024007941041	-0.212419812845152	0.488068250462541	0.761126159857708
Merged-chr1-191281368-4	chr1	191281256	191281456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36762.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	7.82874044393015	7.68874988360338	7.71038217255395	7.64241926028365	8.03563032527906	8.1236763449592	8.1801709859429	7.84736206220442	0.43771051512921	0.00891251194121654	0.0726421261266291
Merged-chr1-183804433-4	chr1	183804312	183804512	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151520, intron 2 of 2)	intron (NR_151520, intron 2 of 2)	55435.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	3.68110578851092	4.00003227663579	4.29949145802205	4.30267311616679	4.12748866104991	3.86671918364211	4.39553389729481	4.41373107952423	0.2889591664253	0.53486819421193	0.789436884581159
Merged-chr11-119054739-2	chr11	119054639	119054839	+	886.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13826.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	2.33375692260243	2.5214350238977	2.40877539544222	2.38932697723291	2.46548904470508	2.65314802454739	2.60137513597233	2.83766709185443	1.20853552037929	0.0799216002849768	0.306208396312002
Merged-chr4-129496799-4	chr4	129496717	129496917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5627.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	7.1094559423808	7.46433253178324	7.19124152046346	6.39726721250229	7.62554944998657	7.29985165102106	7.20943689832524	7.08170223419611	0.320707727718721	0.228452802182061	0.537321649501288
Merged-chr2-75773692-4	chr2	75773589	75773789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58488.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	5.73722754473263	5.57149562593037	5.5659322290354	5.43086439927696	5.47236494083534	5.54232708202683	5.370100340136	5.5081744772398	-0.163729528971568	0.546671583536547	0.796486196515084
Merged-chr13-55318695-5	chr13	55318610	55318810	+	990.919983	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008739)	TTS (NM_008739)	3270.0	NM_009000	19336.0	Mm.220923	NM_009000	ENSMUSG00000034789	Rab24	6530406O07Rik	RAB24, member RAS oncogene family	protein-coding	4.36361560030292	4.33777835567965	4.4921885595359	4.3456802898076	4.39175654160735	4.44713179526598	4.58653954174349	4.64179103970666	0.309743578744492	0.394507072989016	0.693656907966138
Merged-chr2-151563725-3	chr2	151563615	151563815	+	951.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8908.0	NM_145535	228765.0	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	4.19685813335355	3.82090152494326	4.15708822802818	4.35864185552557	3.79230342432025	3.83985533225283	3.38595373847216	3.774118150365	-1.25895032588683	0.0104689011606363	0.0816172963541001
Merged-chr4-24850936-5	chr4	24850782	24850982	+	904.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033531, exon 1 of 10)	5' UTR (NM_001033531, exon 1 of 10)	242.0	NM_001163020	212390.0	Mm.409581	NM_001033531	ENSMUSG00000040387	Klhl32	6430524H05Rik|D4Ertd389e|Gm1356|mKIAA1900	kelch-like 32	protein-coding	3.699504536142	4.16922372528116	4.53278417645909	4.05217350129232	3.62160223602012	3.63168828231801	3.50025263516012	3.91338040207971	-1.34233625712235	0.00826938801337488	0.0687062880126077
Merged-chr3-137945673-4	chr3	137945594	137945794	+	870.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	27139.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	4.36425045562164	4.35800724741011	3.85292706435122	4.61581312429219	3.98560265091824	4.35900547142059	4.16511366351862	4.75808141300914	0.0261518991480959	0.955242625241022	0.984075265351039
Merged-chr19-43711762-4	chr19	43711676	43711876	+	950.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_053103, exon 6 of 13)	exon (NM_053103, exon 6 of 13)	22087.0	NM_053103	93685.0	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	4.20315598566936	4.65296168949566	4.60324947741138	4.39577276776155	4.60140407928001	4.27796442683799	4.78975968009252	4.52164327368993	0.204613471316392	0.59278647037278	0.822397929572839
Merged-chr7-16910142-4	chr7	16910042	16910242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008967, exon 2 of 2)	3' UTR (NM_008967, exon 2 of 2)	3652.0	NM_008967	19222.0	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	6.40856252351122	6.88181663564264	6.73131347382529	6.97106596611367	5.92724692851985	6.37000548886945	7.01879681379286	6.44118701503499	-0.3986563335384	0.164782176844978	0.45503687793485
Merged-chr5-43232052-3	chr5	43231954	43232154	+	912.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 1 of 7)	intron (NR_028417, intron 1 of 7)	-1409.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	3.85409239915966	4.00083396864954	3.80087319343418	4.27001003606168	3.63225991600483	3.97560006008667	3.93914659182067	4.13449941821468	-0.230572571128425	0.623386265677592	0.838941930944268
Merged-chr1-51518870-3	chr1	51518784	51518984	+	601.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	-40485.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	2.97747543558621	2.81990911678503	2.86180074023894	2.96206614514059	2.70552329628344	2.83922402729106	2.85162752026912	2.66439176956898	-0.676156278654246	0.280481982598607	0.592505312991087
Merged-chr17-72838370-4	chr17	72838273	72838473	+	976.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357370, intron 1 of 2)	intron (NM_001357370, intron 1 of 2)	325.0	NM_001357371	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	4.9160962088032	4.76318395503797	5.08382570121284	4.76554645568335	5.02059769102864	5.09014716952751	4.92822705657169	4.94876144713253	0.244076089463069	0.443903943799813	0.730406130879744
Merged-chr11-118443350-4	chr11	118443209	118443409	+	762.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204130)	promoter-TSS (NM_001204130)	-225.0	NM_001204130	56745.0	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	2.96962523691231	3.03496155465538	2.76364063463089	3.15260833162722	3.0045825402611	3.14123454853823	3.13593432190143	3.2007701472866	0.486173609664664	0.416082526727999	0.710072021761014
Merged-chr13-89779440-4	chr13	89779288	89779488	+	897.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36876.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	4.12905290094677	4.23667639070835	3.99161708730228	3.85364438025696	4.16104789937301	3.95772596153726	3.87488989692038	3.83481623895839	-0.215619226183927	0.625602588548577	0.839997329134293
Merged-chr13-99205093-3	chr13	99204952	99205152	+	821.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	20229.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	3.53516190812693	3.25622146930951	2.93931262294077	3.04465934148799	3.65138384977031	3.38484825933006	3.25869046952015	3.20927491802951	0.660739725321954	0.259141405008393	0.570991804521054
Merged-chr1-95449411-3	chr1	95449301	95449501	+	884.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135773.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	4.50905218261807	4.37723887579171	4.50979716230271	4.51090930752796	3.85128471352538	4.08383749678233	4.37237076776523	4.06644969268248	-0.946570447572903	0.0207085146351915	0.131087068825108
Merged-chr1-80452274-4	chr1	80452113	80452313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040460, intron 2 of 2)	L2|LINE|L2	6281.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	5.4349159874199	5.09733832322105	6.06602729759818	5.99805290908553	5.37879939055058	5.52056913795095	5.70230248013416	5.72747426110249	-0.220695930858986	0.508869224455666	0.773827521189954
Merged-chr18-4314759-4	chr18	4314650	4314850	+	676.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38203.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	3.40107547859077	3.1236667483722	3.34673311773099	3.09085858207579	3.57768226779526	3.34246532202501	3.0914402644642	3.50246465758313	0.567623229722003	0.304501414428668	0.617066911687048
Merged-chr7-107595070-4	chr7	107594969	107595169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008905)	promoter-TSS (NM_008905)	18.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	8.51596571990298	8.74752301824736	8.63110473505443	8.75547199659706	8.68934634951097	8.85360145397093	8.92661544119043	8.23515692177866	0.0425877121317932	0.820412374461228	0.931216561407907
Merged-chr16-91398755-1	chr16	91398655	91398855	+	1000.0	f0_c57.idr	intron (NM_001347258, intron 7 of 7)	intron (NM_001347258, intron 7 of 7)	-7480.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	4.55778085158453	4.43983234860435	4.27998570847593	4.68214927346514	4.74084042577175	4.84981525876243	4.8640774983842	4.67508219311302	0.571894953322787	0.109968116663651	0.366215108014911
Merged-chr10-82867081-4	chr10	82866982	82867182	+	987.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025499, exon 1 of 1)	exon (NM_025499, exon 1 of 1)	456.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	5.19421827855524	5.21161562293822	5.79683018378694	5.3211474247114	5.33884291175415	5.37151018398336	5.43833349571516	5.22459346264349	-0.0932719683123506	0.759439384909213	0.905638317712331
Merged-chr3-89964518-4	chr3	89964420	89964620	+	914.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1188.0	NM_001081182	54667.0	Mm.30455	NM_001081182	ENSMUSG00000060671	Atp8b2	Id	ATPase, class I, type 8B, member 2	protein-coding	4.18698722333597	3.93169060252777	3.82308330921738	4.10865234401592	4.48506943097045	4.56455537273657	3.97539566403453	4.2296310050108	0.773196991100679	0.072086369578588	0.288487332746785
Merged-chr1-78910526-2	chr1	78910421	78910621	+	791.5	f0_balb.idr|f1_c57bl6.idr	intron (NR_151519, intron 3 of 3)	Lx8|LINE|L1	93610.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	3.98433395006545	3.64684717711707	3.8876348939081	4.00100329353281	4.26626566872844	3.90214184841085	3.71245003657029	3.98252116957862	0.273960472910136	0.553557893334505	0.800267334299573
Merged-chr1-95319092-4	chr1	95318998	95319198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026321, intron 1 of 2)	intron (NM_026321, intron 1 of 2)	5470.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	5.49478920287926	4.91969638434213	5.39157376815151	5.1239461819548	5.43040939626943	5.22677991204422	5.19120593311477	4.85630656945157	-0.0734783394551716	0.824530471503312	0.932696938095671
Merged-chr5-76139315-4	chr5	76139209	76139409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020611)	promoter-TSS (NM_020611)	-964.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	5.8610965408538	6.44945182935245	5.81094426411917	5.700472372536	6.40140145032533	6.22519841507501	6.56704434642519	6.00016615471589	0.508602713744094	0.0734003029383642	0.291760773041259
Merged-chr19-42072359-3	chr19	42072257	42072457	+	975.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	14013.0	NM_198108	226123.0	Mm.259441	NM_198108	ENSMUSG00000049670	Morn4	-	MORN repeat containing 4	protein-coding	5.48798368456809	5.23082547998754	5.28529286809501	5.37872471196406	3.38796050996418	3.79675601835626	3.64705269445544	4.01129296310623	-4.82349131952342	4.64895981267897e-15	7.62461544946258e-13
Merged-chr11-23306460-4	chr11	23306383	23306583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190401)	promoter-TSS (NM_001190401)	-412.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	8.34143530225774	8.52610193172708	8.20310647159606	8.47365137841776	8.48532910032866	8.71030082049645	8.84237899563988	8.32625857555189	0.264537464923569	0.138930358105205	0.414490902823806
Merged-chr6-128760883-4	chr6	128760781	128760981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27760.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	6.92389880425872	6.63396907525256	6.81126753192307	6.54856572356106	6.2699628979304	6.53007692964326	6.44633169410471	6.54201684401414	-0.409644700719225	0.0633174802192564	0.267042420129552
Merged-chr14-58072142-4	chr14	58071981	58072181	+	990.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013518)	promoter-TSS (NM_013518)	-605.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	4.85823553277289	4.79768919040161	5.14653197420959	4.90859079900782	4.41376657569974	4.620381387213	4.9380972831669	4.95897739510899	-0.38478472039658	0.280241106031426	0.592308919118337
Merged-chr2-30096070-2	chr2	30095970	30096170	+	845.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2435.0	NM_001037762	66220.0	Mm.22538	NM_025428	ENSMUSG00000015335	Zdhhc12	1190004A01Rik	zinc finger, DHHC domain containing 12	protein-coding	3.17234823622676	3.17110602576378	3.17273917081861	3.0649057995638	3.16727548548548	3.45956254560169	3.43310150038456	3.23103161784231	0.686583381646324	0.19991243529454	0.50185984431534
Merged-chr2-72260879-4	chr2	72260732	72260932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-24805.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	8.13482972185564	8.14870805185352	8.32128054589455	8.24223057738195	7.9782970004699	8.14012852061311	8.38023620570736	7.97846709252725	-0.11157798147405	0.513739611421937	0.776626777135012
Merged-chr8-94551832-4	chr8	94551739	94551939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153507, intron 4 of 15)	intron (NM_153507, intron 4 of 15)	18811.0	NM_153507	234577.0	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	6.28838415810409	5.70788348124232	5.54260048263609	6.06234025601472	5.77265472455818	5.91300198682416	6.00231191748435	5.65302370503029	-0.158657943431669	0.576617873343001	0.813620450127494
Merged-chr8-34904285-4	chr8	34904200	34904400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 3 of 26)	MER90a|LTR|ERV1	61390.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	7.10284073706021	6.74913331303109	7.46904637513013	7.53871137000629	6.90492659148742	6.91607885757913	7.23291728290222	6.9359258958273	-0.351086023994986	0.140475544224195	0.416760118470072
Merged-chr5-139789712-3	chr5	139789588	139789788	+	873.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1848.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	4.17645749484977	3.91741098357307	4.05362551741611	4.47334058593237	3.31761964407941	3.64728133465824	3.30974154878506	3.64862094281933	-2.19320197534783	3.58890252945241e-05	0.000846716914630073
Merged-chr11-80429247-1	chr11	80429147	80429347	+	702.0	f0_c57.idr	intron (NM_178616, intron 1 of 13)	CpG	632.0	NM_178616	69077.0	Mm.260539	NM_178616	ENSMUSG00000017428	Psmd11	1700089D09Rik|1810019E17Rik|2610024G20Rik|2810055C24Rik|C78232|P44.5|S9	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	protein-coding	4.41223940886964	4.28643906723691	4.21418459235268	3.99810708024422	3.97833344105897	3.9306008227147	4.01068711606474	4.25418599785024	-0.463093961051249	0.277209769834317	0.589317072069674
Merged-chr17-27851331-4	chr17	27851217	27851417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011432, intron 5 of 5)	intron (NM_011432, intron 5 of 5)	-5190.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	7.13174368242311	7.36240175350187	6.76631212158964	6.99455015617154	7.07709463944464	7.35396436521961	6.99089799910935	6.68317079666435	-0.0477033301376715	0.836342585982982	0.937720204739175
Merged-chr17-8214568-4	chr17	8214444	8214644	+	922.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21499.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	4.9516916576809	4.32583682605837	4.59933349184521	5.11203630041307	4.70570398922314	4.35441771619532	4.15312811170588	4.88604341817532	-0.49260084875944	0.253418742541189	0.564721751011949
Merged-chr7-67551437-4	chr7	67551334	67551534	+	920.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028144, intron 5 of 8)	intron (NR_028144, intron 5 of 8)	93802.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	5.02797020190997	4.98151099800026	4.96580874336873	5.24844073654632	4.53105446594434	4.20064737331801	4.57185150492126	4.6735074809979	-1.18353843613364	0.000925433669442088	0.0126522410291052
Merged-chr18-79978287-2	chr18	79978153	79978353	+	946.583374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-68642.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	4.39730845438817	4.25742375757869	4.46954503833188	4.87955338606326	3.24182352184448	3.52729918326554	3.4654948172762	3.47562201355775	-3.70580006257833	8.25000179241663e-10	5.38444480678354e-08
Merged-chr15-79932746-4	chr15	79932662	79932862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144811)	promoter-TSS (NM_144811)	-116.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	6.31343290198077	6.32602380156188	5.57311299994145	5.8572509554522	6.09327048017626	6.07142170209319	5.79209468813873	6.12764197087612	-0.0336422209100759	0.904847330674226	0.964691960037782
Merged-chr9-7346850-2	chr9	7346750	7346950	+	996.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001320076)	promoter-TSS (NM_001320076)	-524.0	NM_001320076	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	3.53849209466398	3.64667495361576	3.18905284586678	3.25399854394911	3.60847577685701	3.48978649132717	3.30461197789726	3.37394513462876	0.129346209127306	0.809133539290582	0.926362488588753
Merged-chr16-10434295-4	chr16	10434216	10434416	+	967.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013778, intron 1 of 6)	intron (NM_001013778, intron 1 of 6)	13046.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	4.52731548652311	4.17404452675896	4.56940200262042	4.52081607305913	4.93607590537079	4.89317641833357	4.69995339492959	4.3453452533164	0.620406776939122	0.102693213822023	0.351981521964548
Merged-chr14-14633326-4	chr14	14633236	14633436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69689.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	6.63702651452346	7.18243601859471	6.46900529989691	5.82897932079503	6.97780583668761	7.63376380111818	6.61969969774119	6.46434057837727	0.537371611806626	0.299904247139841	0.612178295179839
Merged-chr19-12730629-4	chr19	12730530	12730730	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34840.0	NM_029550	64697.0	Mm.218561	NM_029550	ENSMUSG00000024694	Keg1	0610008P16Rik|AI316519|GS4059	kidney expressed gene 1	protein-coding	5.18723288453373	5.39149444190805	5.63476769310015	5.61304942468312	5.21386138085455	5.29648056693881	5.09468533662511	5.34166103949731	-0.432775636214596	0.143118112032622	0.421297445881944
Merged-chr17-5574855-4	chr17	5574737	5574937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	MLT1H1|LTR|ERVL-MaLR	82237.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	7.0557266504547	7.10923281179086	7.29626393289044	7.61496009008384	6.9814064227925	7.01661571764423	7.56136815628976	7.30149897043044	-0.0889259988000767	0.700378018130646	0.879134605729927
Merged-chr11-116138930-4	chr11	116138826	116139026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024177)	promoter-TSS (NM_024177)	-58.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	7.79634640215452	8.1247454869002	7.35031745432689	7.33880635957565	7.93161574465236	8.16689654810351	7.69697766945354	7.82268572609508	0.289942296674818	0.209620088107516	0.514148979562816
Merged-chr4-156228017-4	chr4	156227911	156228111	+	973.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008233, intron 2 of 15)	intron (NM_001008233, intron 2 of 15)	531.0	NM_001008233	231002.0	Mm.423124	NM_001008233	ENSMUSG00000078485	Plekhn1	BC025458	pleckstrin homology domain containing, family N member 1	protein-coding	4.76807266559494	4.66491295562367	4.72915986970083	4.71236663782528	5.20227470533006	4.73651454153282	5.02356309367398	5.13555645282596	0.658461229224743	0.0436741630926967	0.212763209552738
Merged-chr15-58749306-4	chr15	58749222	58749422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74105.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	5.86146993354239	5.124336693918	5.33796983848115	5.82221320501571	5.76547702020347	5.5161353346592	5.59875831400858	5.81470156960389	0.163020788834763	0.597987891505694	0.825699210702461
Merged-chr10-125745043-5	chr10	125744935	125745135	+	860.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-221184.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	4.47484077390679	4.67028201416908	5.04349586848986	5.0362219864913	4.55391401985077	4.30422209390049	4.54118688142926	4.51665610418076	-0.762181378721318	0.0436991394735444	0.212811972798066
Merged-chr15-102516719-2	chr15	102516619	102516819	+	972.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163643, intron 1 of 15)	CpG	285.0	NM_001163643	26404.0	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	2.82367105784279	2.62158966866728	2.88667282724376	2.87909366761361	2.90083431927714	3.05527818241142	2.87635872872257	2.88523038052704	0.528415320354008	0.388495963001209	0.688981838974675
Merged-chr12-111444288-4	chr12	111444170	111444370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009396, intron 1 of 11)	intron (NM_009396, intron 1 of 11)	1609.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	7.02918237498633	7.49289191435008	7.65789040641971	7.31182179698822	7.33589301115202	7.05798098772907	7.44457547717648	6.94544153018053	-0.236680396718814	0.283090805578794	0.595263611222688
Merged-chr2-70877906-4	chr2	70877816	70878016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52436.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	5.45749094733221	5.51953030379984	5.6992380496607	5.91913456191459	5.1784738040137	5.60521706974753	5.80760769486598	5.59387107092981	-0.204051617168827	0.497532134740992	0.767090702736496
Merged-chr18-67391343-4	chr18	67391228	67391428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026473, exon 2 of 4)	exon (NM_026473, exon 2 of 4)	597.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	7.08009952577747	6.81469895401647	6.83023734947525	6.8378077000819	6.77338238351661	6.77984350033534	6.97575319289767	6.8528782181164	-0.0620707559173469	0.7536523606119	0.902798885097597
Merged-chr4-120914041-4	chr4	120913938	120914138	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	10967.0	NM_028457	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	5.04822989247161	5.48303409887472	5.08499878595611	5.15055313997687	5.136319014654	5.45549834891278	5.3429153945447	5.50015674518624	0.277152975484877	0.36279567533374	0.668027464471291
Merged-chr1-128832694-4	chr1	128832584	128832784	+	918.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAG)n|Simple_repeat|Simple_repeat	-240385.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	4.22716041316956	4.69199591797812	3.97142275515983	4.43082054809122	4.3106416638264	4.25666383809285	4.34061090442137	4.17787783616812	-0.220232907013392	0.597379298039054	0.825256992211092
Merged-chr17-35094933-3	chr17	35094832	35095032	+	881.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178592, intron 5 of 19)	MIR|SINE|MIR	5641.0	NM_178592	193742.0	Mm.43745	NM_178592	ENSMUSG00000007036	Abhd16a	AI326074|Bat-5|Bat5|D17H6S82E|NG26	abhydrolase domain containing 16A	protein-coding	3.63940719830531	3.50507412847898	3.27485181246448	3.73375210491078	4.15557101872517	3.75786688477718	3.57168946513686	3.46808295283894	0.657884944499824	0.222608606126613	0.530716036156423
Merged-chr5-45917041-4	chr5	45916947	45917147	+	919.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	15362.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	4.57790577514929	4.22592765539978	4.30850815284397	4.82640907088037	4.61214597922354	4.7114241281616	4.51655142440898	5.01636407536471	0.429097665427905	0.282096736354613	0.594254538219845
Merged-chr11-82870263-4	chr11	82870162	82870362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164569, intron 1 of 7)	intron (NM_001164569, intron 1 of 7)	482.0	NM_001164570	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	7.31176165387378	7.4584649699792	7.14976359885917	6.92998843436156	7.43292930555556	7.349838146408	7.27654637901799	6.91597742002444	0.0588232460091771	0.786520721174281	0.916992990510127
Merged-chr5-123893727-4	chr5	123893632	123893832	+	929.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	-13543.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	5.23537804678506	5.48583406642429	5.08451456966023	4.65053184381123	5.01723594648771	5.05095816582714	4.77379537593257	4.70994391967717	-0.4663223388486	0.205141264960779	0.508754053818447
Merged-chr1-144313565-4	chr1	144313471	144313671	+	932.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64467.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	4.75998801131014	4.69481786870831	4.67780193653084	5.26400833944708	5.09231717253614	4.72355709203212	5.25440343190387	4.97835734923155	0.257009214171081	0.484316388939932	0.758468598014464
Merged-chr11-34071457-4	chr11	34071344	34071544	+	889.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 7 of 20)	intron (NM_010696, intron 7 of 20)	24516.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	4.43185993644787	4.13407090432732	3.80898632874784	4.2897661276193	4.05326335165367	4.04130497394668	3.61336942548565	4.01783537427645	-0.64204714214586	0.166624745833636	0.457960964592688
Merged-chr15-101975623-4	chr15	101975459	101975659	+	896.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21272.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	3.32325412903116	3.25230511243394	3.37821682207919	3.09541143589432	3.292450095412	3.31911215735145	3.19591271496103	3.37629798877493	0.154604030671548	0.771694417583025	0.910466384040148
Merged-chr2-112493258-4	chr2	112493144	112493344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028844, intron 1 of 5)	CpG	280.0	NM_028844	74268.0	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	6.9699520538838	6.81742838717783	7.16174094010952	7.36858720186341	6.84776032169007	6.99843540576363	6.98617089930364	7.07692977583695	-0.184094998628604	0.386804445479856	0.68782736146724
Merged-chr14-26466128-4	chr14	26466028	26466228	+	913.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 5 of 22)	intron (NM_001310445, intron 5 of 22)	68496.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	4.70692514849695	4.76359954555672	4.67123865702848	4.6359300186618	4.55184598820977	4.68697036579333	4.2172282278515	4.23228367893883	-0.560596864031102	0.133608647167706	0.406961207171022
Merged-chr7-39544388-4	chr7	39544307	39544507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26641.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	6.80009369725777	6.46667613562725	7.17945069323306	7.24957491729799	6.69860751513916	6.82777082398485	7.01071735764801	6.69265392708866	-0.222185424697054	0.364862565928016	0.669636959088136
Merged-chr6-108179244-4	chr6	108179139	108179339	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145937, intron 1 of 8)	intron (NM_145937, intron 1 of 8)	6344.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	4.70051406644447	4.71808604587779	4.30202526666565	5.37814965635048	4.59140197339079	4.43240448944162	4.71631463131522	4.57834083441511	-0.576593430175768	0.172173028173412	0.465442611939055
Merged-chr10-51481063-3	chr10	51480991	51481191	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291893, intron 2 of 7)	intron (NM_001291893, intron 2 of 7)	479.0	NM_001291892	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	5.08213498482179	5.75087118110745	4.58689010382953	4.80954109613189	5.01939612967178	4.81356086136466	4.6549686582599	4.75742905100231	-0.611789394907759	0.135150579456156	0.409284167709428
Merged-chr13-97187233-2	chr13	97187133	97187333	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010422, intron 5 of 13)	L1MC4|LINE|L1	11124.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	1.99587298247154	1.95095565810396	1.91369296611061	1.97190610983287	2.06833940683907	2.32390678294755	2.27457368515219	2.57098202873624	2.3984600232243	0.0049756225649638	0.0473831812049571
Merged-chr4-126204868-4	chr4	126204761	126204961	+	958.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2151.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	4.2668439560432	4.51293344231568	4.4668394772287	4.70838604101498	4.98553465774092	4.77421017169226	4.99746938559612	4.95771227305622	0.864247794300389	0.0153580347557988	0.10664028444864
Merged-chr10-53629497-4	chr10	53629422	53629622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027830, intron 2 of 13)	CpG	917.0	NM_027830	71567.0	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	6.61950104807976	6.56446339346095	6.52270653953244	6.70450958215628	6.65822522679434	6.57558223462478	6.99654288547165	6.70677012586695	0.18814414394041	0.374427746378712	0.677784078373359
Merged-chr14-66805627-2	chr14	66805540	66805740	+	758.0	f0_balb.idr|f0_c57.idr	intron (NM_009955, intron 13 of 13)	intron (NM_009955, intron 13 of 13)	62960.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	4.0284500689446	3.82929417168469	3.97534078275218	4.38379273791077	4.35019047226756	4.15385295777634	4.62104164582947	4.42977273811232	0.745943471397202	0.0901591380748747	0.327810749114653
Merged-chr8-120743752-4	chr8	120743645	120743845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008320, exon 3 of 9)	exon (NM_008320, exon 3 of 9)	5106.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	6.97107127525392	6.65681712084165	7.51324729713908	7.36769634080914	6.82417766178769	6.54057980588035	6.89820240249125	7.13444137152073	-0.42333017671205	0.0969416326605009	0.34112163689647
Merged-chr14-21757756-4	chr14	21757664	21757864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359953, intron 1 of 5)	(T)n|Simple_repeat|Simple_repeat	6212.0	NM_001359953	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	6.57511276188831	6.96773224397483	6.43672291279985	6.83499244125371	6.86548156804111	6.84817174108105	6.47518563229006	6.85153897460044	0.0587023781276642	0.796768258342423	0.92135824726854
Merged-chr9-56108353-4	chr9	56108242	56108442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	18366.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	7.49965137435741	7.69154723004492	7.65568139789917	7.59325375486614	7.78754270383473	8.00853826205909	7.94012149483142	7.91211734181897	0.389137812100437	0.0185449043428926	0.121771932308372
Merged-chr11-80174340-6	chr11	80174218	80174418	+	758.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 8 of 10)	intron (NM_172133, intron 8 of 10)	-9554.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	3.6880048799892	3.54433134579635	3.58674580193763	3.54488606512913	3.4547592974721	3.64858548762881	3.40511532293466	3.63655381545503	-0.169197936552557	0.727488206181868	0.891505430861744
Merged-chr3-146451507-3	chr3	146451427	146451627	+	655.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028836, intron 1 of 5)	ORR1B1|LTR|ERVL-MaLR	1060.0	NM_001293672	74245.0	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	3.35452446680761	3.13209093706425	3.41218546330182	3.24181437896822	3.43256527097421	3.40899508781283	3.73601253549083	3.46502078525348	0.801176219776318	0.119859866032958	0.383231758348752
Merged-chr15-101275850-3	chr15	101275748	101275948	+	866.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8453.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	3.71211161772994	3.77196816268157	3.8786554087984	3.34436461568264	4.28858093004359	4.36845308980512	3.8097250793847	4.1131792400601	1.35651588879941	0.00411369517397721	0.0409522669634299
Merged-chr7-126797740-6	chr7	126797613	126797813	+	936.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001177308, exon 2 of 9)	exon (NM_001177308, exon 2 of 9)	1465.0	NM_001177307	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	2.92638004424878	3.04404994246183	2.78830878132117	2.63644808423282	3.09389064953211	3.10278385049841	2.98005749091246	3.41245224607058	1.28634428167776	0.0359675103584658	0.188408538512677
Merged-chr1-163383786-1	chr1	163383686	163383886	+	862.6666869999999	f0_balb.idr	Intergenic	Intergenic	19883.0	NR_132627	98376.0	Mm.32901	NM_178883	ENSMUSG00000040124	Gorab	NTKL-BP1|SCYL1-BP1|Scyl1bp1	golgin, RAB6-interacting	protein-coding	3.48331697517937	3.6769141786626	3.64799041473505	3.89613542417466	3.17761223745301	3.41064283332151	3.35027894991328	3.96176971506128	-0.575871536366756	0.305925788968861	0.61839573445345
Merged-chr6-138141430-4	chr6	138141314	138141514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361309)	promoter-TSS (NM_001361309)	-173.0	NM_001347489	56615.0	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	6.41056192479056	5.99086217434019	6.71759829871177	6.53539577418984	5.98032301150488	5.7908833291921	5.97500767170532	6.13122617407189	-0.709604898639522	0.00642829653431402	0.0571164297860364
Merged-chr11-85823364-3	chr11	85823271	85823471	+	706.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	9017.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	3.71314100185129	3.52362288524466	3.61145392634762	3.46947782685089	3.47649707863058	3.49376621053007	3.83546348979963	3.66146481794304	0.151615472291166	0.755782113186342	0.903964225680809
Merged-chr13-95503599-3	chr13	95503484	95503684	+	808.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	21656.0	NM_007974	14063.0	Mm.1614	NM_007974	ENSMUSG00000021678	F2rl1	Gpcr11|PAR-2|Par2	coagulation factor II (thrombin) receptor-like 1	protein-coding	2.95038619845596	2.86925740334783	3.11564235274749	2.42819434851407	4.30068771375218	3.82286266585726	3.99683112430804	4.27460512997871	6.21636245834182	7.96134424337612e-15	1.25371796880369e-12
Merged-chr11-88908704-2	chr11	88908604	88908804	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045955, intron 2 of 4)	B3|SINE|B2	2776.0	NR_045955	73921.0	Mm.439148	NR_045955	ENSMUSG00000087338	Scpep1os	4930405P13Rik	serine carboxypeptidase 1, opposite strand	ncRNA	2.85817757060944	3.10627205602865	2.78552277777032	2.96715631214715	3.29095411573094	3.10298897030964	3.31638081733163	3.22633402953293	1.18466784471208	0.0423381166326433	0.208812694276255
Merged-chr9-104063717-4	chr9	104063601	104063801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175324)	promoter-TSS (NM_175324)	-2.0	NM_175324	102632.0	Mm.41274	NM_175324	ENSMUSG00000090150	Acad11	5730439E10Rik|AI987948	acyl-Coenzyme A dehydrogenase family, member 11	protein-coding	6.78234622969453	7.12652977954863	6.70909594416221	6.77999628454081	6.9463138921027	7.08381475389534	7.03246975836086	6.74947173826153	0.136948263558298	0.512348011977118	0.775808265673607
Merged-chr9-105186895-4	chr9	105186774	105186974	+	836.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172461, intron 15 of 15)	intron (NM_172461, intron 15 of 15)	-41792.0	NM_028562	73532.0	Mm.23516	NM_028562	ENSMUSG00000032566	1700080E11Rik	AI429110|Tseg8	RIKEN cDNA 1700080E11 gene	protein-coding	3.95296984234356	4.11703312255429	4.22520969110358	4.1101815473089	3.98901379358382	3.72803882494354	3.83347638863551	4.22248266200458	-0.38974376811196	0.374199189462872	0.677586056340113
Merged-chr17-5238066-3	chr17	5237989	5238189	+	797.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	180678.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	3.51671826357693	3.51956168435986	3.56878168386431	3.74728223949596	3.45113548069426	3.26535140562855	3.21297075663319	3.46157980357583	-0.83168421978344	0.111870358992628	0.369641643428476
Merged-chr1-136117171-3	chr1	136117070	136117270	+	998.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081023, intron 40 of 43)	intron (NM_001081023, intron 40 of 43)	14013.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	3.92808017089361	4.34872696976266	3.80087583614263	3.6681629137321	4.85286376729101	4.72774027026894	4.64123084363039	4.82552026393097	1.93087737739019	2.85280563449619e-06	9.03693156465529e-05
Merged-chr11-46039547-4	chr11	46039458	46039658	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14944.0	NM_001291890	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	4.98131238852257	4.89673573026582	5.19690827732085	4.93430104882092	5.67551205564925	5.55518054354027	5.82118288757121	5.31881021991466	1.09653763063325	0.000198434353118996	0.00361699329594289
Merged-chr2-75720802-4	chr2	75720700	75720900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-16137.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	6.86573810439563	6.85057895527017	6.54167813704389	5.68001414946895	7.1422407798139	7.16685257817992	6.70931380079738	6.46770196619388	0.493180788949045	0.117548015868531	0.37922032519485
Merged-chr8-85072139-4	chr8	85072072	85072272	+	957.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039514, intron 1 of 8)	intron (NM_001039514, intron 1 of 8)	415.0	NM_001039514	330817.0	Mm.193086	NM_201408	ENSMUSG00000060038	Dhps	Dhs	deoxyhypusine synthase	protein-coding	4.77707498942607	4.63345777934064	4.2896875545037	4.68801300392751	4.74256110039842	5.02120860249713	5.01859069145452	4.81110512866284	0.584055928697266	0.0961518918379828	0.339783667599249
Merged-chr10-21465544-3	chr10	21465440	21465640	+	901.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88240.0	NM_178713	237320.0	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	4.45659206309453	4.2877596329856	3.8281225584513	4.02524148213273	3.79944287362332	3.8290443945468	3.97433247777604	4.45428899175768	-0.328593434589027	0.490158192906155	0.762136344258112
Merged-chr2-103153476-4	chr2	103153373	103153573	+	972.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79798.0	NM_019735	56369.0	Mm.24772	NM_019735	ENSMUSG00000010911	Apip	APIP2|CGI-29|Mmrp19	APAF1 interacting protein	protein-coding	4.71090723581619	4.67970380508693	4.56319531094308	4.67672641854158	4.73984301032174	4.10181181416817	4.58029863126924	3.97403818448032	-0.572461352481082	0.176303181681155	0.471307205534908
Merged-chr1-191875909-4	chr1	191875873	191876073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30808.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	6.81609926851128	6.62730926814459	7.27935039046868	7.22270977975331	6.21451007493693	5.97140913718752	6.48430656561142	6.20939560350451	-1.13576118353452	6.59835047051068e-06	0.00018991669556833
Merged-chr12-33158426-4	chr12	33158296	33158496	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	10710.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	4.32998031798607	4.52366965095432	3.85551493460844	3.72479836452698	4.83081431533072	4.46149987048719	4.17185609609754	4.67520669876151	0.974499857631548	0.0350093354931939	0.185314902288246
Merged-chr4-95193208-4	chr4	95193109	95193309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140987.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	7.40501168310761	6.90852758702822	7.31825755931825	7.75362378563048	7.13958938728538	7.00717198096282	7.32148519329608	6.82382427881602	-0.411899586135109	0.0850404727991741	0.317381282160886
Merged-chr7-27238790-4	chr7	27238701	27238901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133770, intron 5 of 14)	intron (NM_133770, intron 5 of 14)	5788.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	8.14449542835924	8.29472433153213	8.28587054493414	8.22655087484369	8.14298429931118	7.96887707439471	8.17320792710492	7.98970635922179	-0.21013051088384	0.179322469508928	0.475558645945455
Merged-chr17-13850362-4	chr17	13850256	13850456	+	865.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 17 of 33)	B3A|SINE|B2	-88962.0	NM_022311	21646.0	Mm.486358	NM_022311	ENSMUSG00000038347	Tcte2	AI429268|Tcte-2	t-complex-associated testis expressed 2	protein-coding	4.11430899927496	4.27782178738194	4.28917107994708	4.24586159738785	3.9960114296813	4.19129150317206	4.0013519293372	3.85552296662554	-0.578425035096492	0.160778718537665	0.449086387269648
Merged-chr14-49063066-4	chr14	49062968	49063168	+	894.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207214, intron 1 of 17)	intron (NM_207214, intron 1 of 17)	-3481.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	4.71344074303663	4.55432644883807	4.06824732313418	4.26421367141308	4.30138769968601	3.96326121866175	4.10244975522755	4.30473345181288	-0.574862275529876	0.179694779289918	0.475928644273867
Merged-chr8-70839056-1	chr8	70838956	70839156	+	1000.0	f1_c57bl6.idr	intron (NM_027560, intron 1 of 7)	CpG	664.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	4.26462823665724	4.41408498542548	4.8892789663352	4.48302689846101	4.36233920591219	4.78638751224304	4.43186738064782	4.57331538335605	0.0270162279054912	0.944663420811495	0.980106371692172
Merged-chr1-138162893-4	chr1	138162778	138162978	+	881.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	12248.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	4.08055094251052	4.76999618534543	4.41506570287956	4.243852158754	4.57640455095451	4.41036044164465	4.2166341356167	4.41225211783743	0.0341966771425689	0.933632418329444	0.976073995421413
Merged-chr3-69670414-4	chr3	69670269	69670469	+	758.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11D|LTR|ERVK	-51686.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	3.02942641137364	2.9399606019911	3.28182013639441	2.82714336439404	3.3968367264433	3.45488174710615	3.2106988439322	3.62905948086853	1.56772269980523	0.00584949022197444	0.0532771419718386
Merged-chr8-124704622-3	chr8	124704525	124704725	+	828.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357357, intron 4 of 19)	intron (NM_001357357, intron 4 of 19)	17369.0	NM_001357357	234875.0	Mm.38436	NM_145607	ENSMUSG00000037300	Ttc13	BC017545	tetratricopeptide repeat domain 13	protein-coding	2.29614363034313	2.32219748642192	2.29631758228542	2.12182825898027	2.7420082372647	2.7911066668251	3.15526799907005	3.07527185085434	4.33169209883024	2.29245917592491e-07	9.10066657463242e-06
Merged-chr13-45889553-2	chr13	45889453	45889653	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	75438.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	3.03361510878205	3.02634963897431	2.97226224260288	2.59683816947708	2.79953925488369	3.31908599040595	2.8975017979173	3.14758305262457	0.582564021323544	0.364869528467858	0.669636959088136
Merged-chr9-66305399-4	chr9	66305302	66305502	+	801.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45048.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	3.33987627485401	3.57011312666557	3.40145201799855	3.75692655094584	3.68351734481691	3.45251384858042	3.44721196605005	3.66817823591261	0.0932290793870992	0.856916708809979	0.946159157665131
Merged-chr4-86856908-1	chr4	86856808	86857008	+	1000.0	f1_balb.idr	intron (NM_009096, intron 1 of 4)	CpG	459.0	NM_009096	20104.0	Mm.379007	NM_009096	ENSMUSG00000028495	Rps6	S6R	ribosomal protein S6	protein-coding	4.44406847377483	4.38915395097635	4.95262294069575	4.82334348190992	4.81616715253618	4.95262749841167	4.8627565937557	4.7771028731426	0.349047786899899	0.330475816311877	0.641861442077688
Merged-chr14-63382021-4	chr14	63381925	63382125	+	928.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 6 of 12)	intron (NM_007549, intron 6 of 12)	35162.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	4.69326797620523	4.76734144459943	4.44305563860833	4.52346024557473	4.60572337646314	4.70706198702188	4.84730167641801	4.72833881067233	0.24106875391822	0.487101200001161	0.760577292750831
Merged-chr11-59297148-3	chr11	59297054	59297254	+	750.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-6403.0	NM_009522	22416.0	Mm.1367	NM_009522	ENSMUSG00000009900	Wnt3a	Wnt-3a|vt	wingless-type MMTV integration site family, member 3A	protein-coding	3.12626200473357	3.23562555994313	3.12662492572808	2.97321309405939	3.51771750586345	3.53072620240259	3.2941413467268	3.24799508103585	1.10085299222548	0.0404733760945594	0.203281482638347
Merged-chr5-64811320-3	chr5	64811184	64811384	+	944.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	7761.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	4.64564997442169	3.99756189045065	4.21115899263342	4.59383141545536	3.84317727232767	4.24002924124592	4.09591094354668	4.57461187693984	-0.44155090251896	0.336115959553321	0.646244323954596
Merged-chr10-30654389-3	chr10	30654263	30654463	+	932.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001358841, exon 12 of 16)	exon (NM_001358841, exon 12 of 16)	1504.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	3.53452055438488	3.54661765779859	3.69125108309537	3.57831058146983	3.325547131598	3.65123839495916	3.67550355343175	3.53307698709154	-0.135895169751878	0.782354859055093	0.91529005173258
Merged-chr6-116654338-4	chr6	116654255	116654455	+	859.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 3 of 10)	intron (NM_178045, intron 3 of 10)	3671.0	NM_001166580	213393.0	Mm.38231	NM_145980	ENSMUSG00000048489	8430408G22Rik	Depp|Depp1|Fseg	RIKEN cDNA 8430408G22 gene	protein-coding	4.08841732368289	4.15503318041082	3.99029971121583	3.57209271293605	4.11947638967085	4.43602998784318	4.02318973437263	4.26360455405895	0.677547183462809	0.131877768542227	0.404277862400068
Merged-chr8-94195067-4	chr8	94194984	94195184	+	949.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	15995.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	4.57642109113884	4.55308704844775	4.53560380702944	4.05604108321796	5.01502994296484	4.43600506235879	4.87601285960484	4.72790104826834	0.784279955657125	0.0436438216336503	0.212644505446067
Merged-chr7-44929742-4	chr7	44929622	44929822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007458)	promoter-TSS (NM_007458)	-232.0	NM_001077264	11771.0	Mm.6877	NM_007458	ENSMUSG00000060279	Ap2a1	Adtaa	adaptor-related protein complex 2, alpha 1 subunit	protein-coding	9.36464826833113	9.62806252162681	9.64211560144449	9.39842321666283	9.5003918597026	9.75760090727563	9.67198844585402	9.42127158210209	0.098244610969455	0.52621260935978	0.783568247232079
Merged-chr11-117390342-4	chr11	117390223	117390423	+	658.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-24066.0	NR_132097	105827746.0	Mm.388009	NR_132097	ENSMUSG00000086588	Gm11729	-	predicted gene 11729	ncRNA	3.3691740694823	3.34274421100089	3.25350472270995	3.11999408404454	3.54954037950698	3.36577568879514	3.35652347083953	3.36779466333146	0.547175951266114	0.292313685167495	0.604654036582073
Merged-chr7-102016372-7	chr7	102016316	102016516	+	847.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010531, intron 4 of 6)	intron (NM_010531, intron 4 of 6)	1739.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	3.69139133140695	4.01363259240989	4.06413947615009	3.55666632020214	3.9569870017886	4.09334917651368	3.79392605220457	4.5838111201868	0.796176930471705	0.101881372805013	0.350329190091209
Merged-chr1-133025351-4	chr1	133025238	133025438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302803)	promoter-TSS (NM_001302803)	78.0	NR_126506	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	6.45090775814348	6.31313352641466	6.41738443264282	5.91786753479228	6.6751631101505	6.61102822060643	6.5785013789696	6.66633277352518	0.539194273313649	0.0207841651757499	0.131420102429129
Merged-chr18-9806713-3	chr18	9806616	9806816	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	URR1B|DNA|hAT-Charlie	99068.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	5.62184900768376	5.54711104065415	5.5348331951567	5.75112484755208	3.78843836095844	4.17769514144778	4.43559672481484	4.34584432727231	-3.16549606867747	3.61508286086186e-15	5.98413913844852e-13
Merged-chr5-117884969-2	chr5	117884869	117885069	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 2 of 27)	intron (NM_008712, intron 2 of 27)	18130.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	4.03784452919169	3.83038146212642	4.12349100666084	3.62519281210199	3.81724216401283	3.91781814724389	3.72813934126861	3.84684230946846	-0.216166128202044	0.641634814292998	0.848835113142923
Merged-chr7-43392558-4	chr7	43392476	43392676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-15704.0	NM_172900	243958.0	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	6.32272517385264	5.92161380999543	6.07809496873396	6.21044817113171	5.99066257381177	5.95090626102767	6.02611747337142	6.23046464176694	-0.14233890470389	0.555666153912057	0.80160086764792
Merged-chr8-110594330-4	chr8	110594233	110594433	+	978.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172916, intron 79 of 86)	intron (NM_172916, intron 79 of 86)	-24234.0	NR_151674	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	4.66416143781857	5.42229067838146	4.96948987150043	4.99370958755809	5.77292672198934	5.36084642800256	5.70748555612561	5.27608231455022	0.91352616609398	0.00616615331213424	0.0553329080439238
Merged-chr12-36187303-4	chr12	36187206	36187406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146033, intron 6 of 9)	intron (NM_146033, intron 6 of 9)	30182.0	NM_146033	217473.0	Mm.130422	NM_146033	ENSMUSG00000036188	Ankmy2	AI035571|ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding	7.51136871917778	7.26234040410738	7.69692479020758	8.12399454117749	7.11834883233832	7.10462347030871	7.46653136777659	7.21423204739038	-0.629306366106314	0.00749372058243413	0.0640561471522852
Merged-chr2-5741078-4	chr2	5740969	5741169	+	959.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26307.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	4.6136088769316	4.62015281044624	4.86992079629121	4.61176804815275	4.47774728392624	4.57259310624447	4.63245794806377	4.89916236189059	-0.0599891290088017	0.865735475517152	0.949727926552738
Merged-chr4-119239434-5	chr4	119239351	119239551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019782, intron 5 of 15)	intron (NM_019782, intron 5 of 15)	5622.0	NM_001042411	56401.0	Mm.27961	NM_019782	ENSMUSG00000028641	P3h1	2410024C15Rik|Gros1|Lepre1	prolyl 3-hydroxylase 1	protein-coding	4.3463874326995	4.62298384689574	4.77056845096091	4.45450478510397	4.56602201509613	5.04441977800517	4.63553085918847	4.90386359465044	0.515089518187557	0.157654191361953	0.444315791347796
Merged-chr3-35932866-4	chr3	35932842	35933042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205362)	promoter-TSS (NM_001205362)	24.0	NM_001205361	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	5.83426779244681	5.40295967880438	5.83530030294399	5.65585145558125	5.40432450228071	5.79255296343638	5.97062745336536	5.24946571872089	-0.097382879545307	0.748501700518658	0.900999421474581
Merged-chr4-117041617-4	chr4	117041525	117041725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111277, intron 3 of 11)	intron (NM_001111277, intron 3 of 11)	22223.0	NM_001111277	108067.0	Mm.34612	NM_175135	ENSMUSG00000028683	Eif2b3	1190002P15Rik	eukaryotic translation initiation factor 2B, subunit 3	protein-coding	6.48336778979599	6.29941817251387	6.70035482820802	6.47564058923381	6.35107122807415	6.4617022703334	6.45135712521792	6.77775003385025	0.0325016889889347	0.886115990423457	0.957247996194402
Merged-chr11-51650901-4	chr11	51650796	51650996	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027958)	promoter-TSS (NR_027958)	-58.0	NR_027958	97775.0	Mm.220299	NM_175289	ENSMUSG00000052563	D930048N14Rik	AI315703|R75254	RIKEN cDNA D930048N14 gene	ncRNA	5.01769929992416	5.20119722884895	4.80213864016978	4.5135153200593	4.98768667789211	5.37380865350192	4.96055495170942	4.63186838472414	0.22381260938284	0.549460488198405	0.798017111469724
Merged-chr5-130853531-4	chr5	130853451	130853651	+	999.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	404759.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	5.48126334134164	5.17792272741286	5.3129032789854	5.29848584771864	5.3580688566312	5.22287554705572	5.48061458335276	5.39673513040573	0.0928141158880683	0.743458308777565	0.89894073126818
Merged-chr11-57791326-4	chr11	57791229	57791429	+	762.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10138.0	NR_131042	76516.0	Mm.28485	NR_131042	ENSMUSG00000087165	2010001A14Rik	-	RIKEN cDNA 2010001A14 gene	ncRNA	3.90936433061868	3.78991602319225	3.76537145136501	3.67702084424438	3.43627517552131	3.66046691461655	3.84672573895759	3.86121782594656	-0.230324324701608	0.628808864222444	0.841823003934767
Merged-chr1-163910515-4	chr1	163910419	163910619	+	831.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305643, intron 19 of 19)	intron (NM_001305643, intron 19 of 19)	-18581.0	NM_001286002	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	4.42245755050693	4.38036353135831	4.50458906415625	4.11190394616121	4.5473268382244	4.21537185796574	4.63068260082925	4.42033564558197	0.282498669315738	0.46742431918626	0.746986879554531
Merged-chr2-167230747-4	chr2	167230637	167230837	+	868.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008968, intron 1 of 9)	intron (NM_008968, intron 1 of 9)	9800.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	4.45405512166092	4.2923272111464	4.01418301720316	3.96652865859319	4.50312139251941	4.19049748914619	4.14486775826274	4.01189965276438	0.12130528655826	0.778904834579627	0.913802853320572
Merged-chr4-150188425-1	chr4	150188325	150188525	+	568.0	f0_balb.idr	intron (NM_009802, intron 7 of 7)	B4A|SINE|B4	12710.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	2.55431876877378	2.64932327598764	2.66887718391057	2.4689751864304	2.09527934870043	2.15254554412718	2.13207669849669	2.36058754075463	-2.95373227919529	0.00187421311184723	0.0222341025146956
Merged-chr13-64426409-2	chr13	64426327	64426527	+	713.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-6126.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	3.07460178174674	2.9586119924317	3.18636560154717	2.49116071729373	2.73964109866096	2.85813755592347	3.00376636702432	3.28662603930906	0.137875616383135	0.841626351735766	0.939882709487764
Merged-chr9-77709177-4	chr9	77709093	77709293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45342.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	5.75416310872122	5.61462133468943	5.54453387801418	5.97317170605582	5.86427942811577	5.40253286908133	5.84100389119974	5.84446478567363	0.0162168568231818	0.953653545765918	0.983484580325591
Merged-chr2-102882345-4	chr2	102882256	102882456	+	768.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	19309.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.81988219720432	4.17994073319574	4.03205334269936	3.79578535208943	4.19913398524524	4.25165920197197	3.96565077237159	4.29317910295818	0.589579216719883	0.165192613376249	0.455772085768736
Merged-chr5-123014950-4	chr5	123014857	123015057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175423)	promoter-TSS (NM_175423)	-117.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	8.15570519798049	8.12441064753023	7.28558543506995	7.63385650349227	7.96778019641731	7.8681886179878	7.73443163746573	7.90875800344345	0.0345249923229935	0.87823853058116	0.954456681704503
Merged-chr12-4843305-4	chr12	4843171	4843371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173416)	promoter-TSS (NM_173416)	-32.0	NM_173416	238037.0	Mm.146087	NM_173416	ENSMUSG00000051721	Wdcp	A430092C04	WD repeat and coiled coil containing	protein-coding	6.24866770746588	6.34987481777587	5.87746550152936	5.87871748640156	6.57433323901391	6.40636480528252	6.2177316580413	6.31894207767375	0.447944987028483	0.0714536614373648	0.286926882807552
Merged-chr13-89488385-4	chr13	89488290	89488490	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52246.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	4.66744694929228	4.50651365218409	4.45760895644262	4.50480938003819	6.0914371371228	5.81462563150502	6.18173422249395	5.53686741085984	2.53340843056184	2.02385513653613e-15	3.50501179473249e-13
Merged-chr11-101785360-4	chr11	101785253	101785453	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316366)	promoter-TSS (NM_001316366)	-43.0	NM_001316365	18612.0	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	4.70695507187689	4.63471333189585	4.62968575525262	4.70933674429434	4.85080367560183	4.67834025168897	4.75844750556315	4.54374198096703	0.0995099545224583	0.76985384946989	0.909883669779186
Merged-chr16-75961670-4	chr16	75961550	75961750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39134.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	7.24468394833972	7.71747460882821	7.38907469516388	6.84957631946385	7.35014901520815	7.34510968713694	7.4087773014476	6.71014531765575	-0.131788674647007	0.607037556475619	0.829764488936265
Merged-chr10-26779070-4	chr10	26778960	26779160	+	914.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	6548.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	4.98202960137972	4.8110494810617	5.10353447042723	5.32636686770437	4.42079181985104	4.57123193383487	4.63809366876415	4.11097006433834	-1.34553773719391	0.000366593174372437	0.00597520850896627
Merged-chr4-109475946-2	chr4	109475846	109476046	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013876, intron 1 of 2)	intron (NM_013876, intron 1 of 2)	559.0	NM_013876	29864.0	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	3.42018970552495	4.00659268409721	4.10158093550228	3.75399297775752	4.19863075428283	3.86837904299084	3.84239935377806	4.47763949419352	0.750546107056519	0.134183449667061	0.407825042139404
Merged-chr12-52283779-4	chr12	52283687	52283887	+	890.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 7 of 10)	MTC|LTR|ERVL-MaLR	186041.0	NM_029760	76826.0	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	3.8519248263587	3.46541192119613	3.7513707847212	4.14112687223258	3.85197603097573	3.63791502433705	3.88333561346499	3.80073951599176	-0.121205412608538	0.806967208952732	0.925575415525044
Merged-chr11-100327912-4	chr11	100327779	100327979	+	939.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6528.0	NM_010257	14459.0	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	4.01478436384745	3.58766842475375	3.66487262268353	3.72818201619926	4.0558624965882	3.78329560085785	3.90763376177029	3.92228314063	0.492393950066165	0.277417997631295	0.589548446091777
Merged-chr8-119835238-3	chr8	119835097	119835297	+	690.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	5382.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	3.59511650882495	3.66916447143056	3.27695786752967	2.90468930091229	3.02132581973372	3.33116409714033	3.00320018934634	3.54549928176714	-0.536698058403348	0.397822672648984	0.696054529321669
Merged-chr7-97580387-5	chr7	97580307	97580507	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177947)	promoter-TSS (NM_001177947)	511.0	NM_001081267	233532.0	Mm.43977	NM_001081267	ENSMUSG00000035623	Rsf1	4832420A03Rik|C030033M12Rik|Gm164|Hbxap|XAP8|p325	remodeling and spacing factor 1	protein-coding	3.78282201751304	3.82770991138737	4.1640361242863	3.74498869283073	4.09372866732988	4.24749582705254	3.7684609133235	3.78125673766395	0.298325282959029	0.516661583629112	0.778349451006108
Merged-chr2-73004342-5	chr2	73004160	73004360	+	883.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-23814.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	3.83778365710516	3.59797764210536	3.62589898034214	3.75286049369576	3.6795206737821	3.80103700110724	4.08298969922249	3.83606571379998	0.423415408583021	0.357818314224993	0.663866486000028
Merged-chr7-46834054-4	chr7	46833947	46834147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11757.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	6.83925964807593	7.01133194995976	7.09845670405125	7.37344410483015	6.98986446771997	6.98894876888411	7.03929578955728	7.02151635092294	-0.141135545332213	0.493689515952409	0.764438087754564
Merged-chr2-92438136-4	chr2	92438053	92438253	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4084.0	NM_009963	12953.0	Mm.254181	NM_009963	ENSMUSG00000068742	Cry2	AV006279|D130054K12Rik	cryptochrome 2 (photolyase-like)	protein-coding	5.07321671855377	5.22686938717001	4.71838910948638	5.20159491756367	5.38254978234245	5.52394965461874	5.11627705088257	5.20183553755057	0.429496990859764	0.177295067512695	0.472611999493901
Merged-chr13-102678710-4	chr13	102678608	102678808	+	915.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14839.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	4.5571167970949	4.69522324913268	4.33023209020808	4.49459902502119	4.85597005026142	4.64706618418998	4.86310547130445	4.63573657610955	0.504431986424806	0.149766618308921	0.432201018634125
Merged-chr9-37098654-1	chr9	37098554	37098754	+	904.0	f0_balb.idr	intron (NM_001029838, intron 1 of 12)	intron (NM_001029838, intron 1 of 12)	48668.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	3.43063997128732	2.91776720176689	3.29633452219582	3.315347197584	2.46851062602276	2.57089884305003	2.54191031735365	2.62710251423515	-4.73744765006467	8.19728428090074e-06	0.000230684130357186
Merged-chr1-120038809-4	chr1	120038704	120038904	+	978.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 5 of 13)	intron (NM_001012322, intron 5 of 13)	31824.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	4.45738295883152	3.75381702273609	4.32414260496908	4.53733649119056	4.48227110277071	4.67295303903957	4.86139439406087	4.61435270978994	0.783920611198757	0.0683705018359194	0.279205045908142
Merged-chr4-109337001-1	chr4	109336901	109337101	+	804.5	f0_balb.idr	intron (NM_007943, intron 12 of 24)	intron (NM_007943, intron 12 of 24)	-6055.0	NM_001159964	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	3.13045109406549	3.01025090101053	3.28405926015676	3.48209426422278	2.66626814312962	2.71006797436162	2.74831860410728	2.60301592873332	-2.89891283985501	0.000137951756620017	0.00266249134611067
Merged-chr8-116892846-4	chr8	116892745	116892945	+	900.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026844, intron 3 of 3)	intron (NM_026844, intron 3 of 3)	28591.0	NM_026844	66531.0	Mm.4011	NM_026844	ENSMUSG00000014633	Cmc2	1110046L09Rik|2310061C15Rik|DC13	COX assembly mitochondrial protein 2	protein-coding	4.09508318885083	3.9733864264443	3.69029915662529	3.62823077894572	4.77800360341505	4.65313935816467	4.49705600574274	4.04220312318227	1.68990383624514	0.000133282913682885	0.00258420611181395
Merged-chr8-71603164-3	chr8	71603083	71603283	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166213, intron 8 of 14)	intron (NM_001166213, intron 8 of 14)	5537.0	NM_001166213	100037278.0	Mm.482159	NM_001166213	ENSMUSG00000043243	Fam129c	Bcnp1	family with sequence similarity 129, member C	protein-coding	4.81567944880217	4.67555889977429	4.71108295039231	3.67818961494382	7.3025465094016	7.44123300040542	7.01214160449859	6.21469851295529	4.35146923024077	1.81880072498155e-31	2.53843954516592e-28
Merged-chr6-34340670-4	chr6	34340556	34340756	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13490.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	5.04140718696971	4.68755730345834	4.86607514672926	5.2002692094949	4.83466022833111	4.84119671181402	5.17095004791738	5.22195993384635	0.0930186524206667	0.786128093722349	0.916793615374021
Merged-chr1-131060546-4	chr1	131060424	131060624	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	37319.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	5.79102830221045	5.72499967161001	5.70144226556111	5.59300612149401	5.15583895512106	5.36526184347156	5.29384704734871	5.31643965808592	-0.735001003461267	0.0074879612389565	0.064022293456779
Merged-chr9-97106691-3	chr9	97106590	97106790	+	839.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138756, intron 1 of 6)	intron (NM_138756, intron 1 of 6)	4351.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	4.50074993193776	4.05201610714045	4.13664174680086	4.42575995432217	3.90368786360596	3.81534685218001	4.0222306738881	4.38839652107648	-0.631254174094822	0.156070958744091	0.44197234026042
Merged-chr18-36719640-1	chr18	36719540	36719740	+	541.0	f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	7175.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	3.02999364276341	2.91202233645459	2.85562743956395	2.64229105203765	2.61435488761205	2.76085396527608	2.71610140025824	3.08184756428349	-0.268443317765477	0.684156348467846	0.870625464432953
Merged-chr7-126809207-4	chr7	126809103	126809303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7682.0	NM_026884	68952.0	Mm.440393	NM_026884	ENSMUSG00000058966	Fam57b	1500016O10Rik|A330104J06Rik|AI413816|AW060769	family with sequence similarity 57, member B	protein-coding	5.51045897016351	5.68440701642683	5.20108097153428	5.72244845335208	5.54915064302352	5.19507282815287	5.63798882214161	5.68681180161783	-0.0441460344268177	0.881628179198545	0.955384724180766
Merged-chr7-101679806-3	chr7	101679695	101679895	+	732.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009191, intron 2 of 15)	intron (NM_009191, intron 2 of 15)	16027.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	3.26677720898582	3.50071294190195	3.44379854407261	3.43720966973886	3.46136317620473	3.44119482841728	3.43053004318294	3.5473791714252	0.179470742288513	0.719037493385199	0.887731249747022
Merged-chr2-173218981-4	chr2	173218895	173219095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021394)	promoter-TSS (NM_021394)	-73.0	NM_001139519	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	6.68238758079349	6.86553937012516	6.90298578623097	7.11631576846979	7.14498819835412	7.13212774639924	7.04249781456756	6.91144963294721	0.203756411922881	0.317777760466712	0.629652182463903
Merged-chr4-150513548-2	chr4	150513448	150513648	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 10 of 22)	RSINE1|SINE|B4	138626.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	2.91929717881434	2.96069729493464	2.9196819773218	3.38906272712088	2.6238715461601	2.53238056867323	2.65465813171831	2.6608773903806	-2.33888410913821	0.00165864723378598	0.0202158992215157
Merged-chr8-69006077-4	chr8	69005969	69006169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82667.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	5.94459533000055	6.19227277105334	5.99288734157527	5.76247255720033	6.32312687545705	6.38203590264979	6.5283947289289	6.62896132370919	0.756640288961294	0.00146182367717051	0.0182770327625716
Merged-chr2-34871023-4	chr2	34870904	34871104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080554)	promoter-TSS (NM_080554)	-42.0	NM_080554	66998.0	Mm.270632	NM_080554	ENSMUSG00000026869	Psmd5	1500032A03Rik|AW475925|S5b|W91691|mKIAA0072	proteasome (prosome, macropain) 26S subunit, non-ATPase, 5	protein-coding	7.65335512933971	7.75563464224136	7.36596392184853	6.99396561379764	7.70687129863946	7.79824332448842	7.61714183498294	7.7981246908644	0.351397497115962	0.105083643340089	0.356518048107921
Merged-chr7-79920643-4	chr7	79920540	79920740	+	977.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009682)	promoter-TSS (NM_009682)	0.0	NM_009682	11778.0	Mm.220173	NM_009682	ENSMUSG00000063801	Ap3s2	[s]3B	adaptor-related protein complex 3, sigma 2 subunit	protein-coding	5.001513445444	5.11117942327813	5.00234600155542	5.00391493885028	5.14089711497986	5.17561417320455	5.04498080461762	4.8136173373757	0.0485591644507236	0.875426263897754	0.953217111662346
Merged-chr3-110250876-6	chr3	110250708	110250908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024139, exon 1 of 2)	non-coding (NR_024139, exon 1 of 2)	191.0	NM_178891	99890.0	Mm.36115	NM_178891	ENSMUSG00000049300	Prmt6	AW124876|BB233495|Hrmt1l6	protein arginine N-methyltransferase 6	protein-coding	4.88657252554894	4.96733484265981	5.85349463823694	5.26837158489628	4.95735954338551	5.14365508625896	5.11664655702864	5.2639419160261	-0.32900775680577	0.359125645777657	0.665073082746628
Merged-chr4-40757850-4	chr4	40757731	40757931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021535)	promoter-TSS (NM_021535)	54.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	7.02813086070555	7.26527004444204	7.40316799458508	6.88572524665338	7.244976210888	7.32844875231818	7.50093908282351	7.21415031492041	0.237522566367451	0.247816513177156	0.558985029516948
Merged-chr9-123926295-4	chr9	123926199	123926399	+	964.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42393.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	5.21465219760574	5.60837946876573	4.80626648752129	5.31270767308851	5.40676737534356	5.14882290285299	5.39391053821769	5.24342243070459	0.0589332656695791	0.855321217719437	0.945605960367573
Merged-chr13-119809730-4	chr13	119809649	119809849	+	965.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18627.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	5.2924090693221	4.88227819267995	4.51275766835482	5.22597689130342	5.25081828033533	4.96562031289856	5.18110898641563	5.17327125064987	0.237087496523403	0.497359354871157	0.767047462144912
Merged-chr12-113124955-4	chr12	113124880	113125080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 7 of 19)	intron (NM_001346696, intron 7 of 19)	-15256.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	6.926007752524	7.07233056000388	7.12646045555584	7.1329168734513	6.97626864655738	6.85255563719808	7.37601500587078	7.36115166790108	0.122649022277305	0.558737589165127	0.803345041538902
Merged-chr10-75258399-2	chr10	75258299	75258499	+	578.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 6 of 15)	intron (NM_153406, intron 6 of 15)	46009.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	3.41547940697062	3.24362315294096	3.306133552447	3.49528602498206	3.41294825644664	3.29605290353569	3.1756398323158	3.30443540106727	-0.256301962807027	0.629589616984106	0.842328471623466
Merged-chr9-96364501-4	chr9	96364404	96364604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007502)	promoter-TSS (NM_007502)	-73.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	8.55135755373301	8.57573894923448	8.40913206722617	8.53887488955737	8.92620266524708	8.98431180356958	8.81282403774297	8.7846624912663	0.448098657636127	0.00212138691534817	0.0244729658423934
Merged-chr5-66069238-4	chr5	66069159	66069359	+	684.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	28920.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	3.76312847719996	3.66209657104612	3.40784034025202	3.50035486317027	3.46190164172561	4.03522340090419	3.89347297939363	4.19731187559285	0.973604748548597	0.0533762501323965	0.241100907994279
Merged-chr10-127291258-1	chr10	127291158	127291358	+	1000.0	f0_balb.idr	intron (NM_001290183, intron 1 of 2)	intron (NM_001290183, intron 1 of 2)	465.0	NM_001290183	13198.0	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	5.85401895533834	6.41848701204465	5.9972532988835	5.82242404640364	6.04595745367025	6.53823758255599	5.94410074347246	6.23673865806186	0.252176781385165	0.360395000150638	0.665793074685122
Merged-chr4-116632207-4	chr4	116632149	116632349	+	829.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4298.0	NM_016777	50927.0	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	3.71157960193314	3.72625948958975	4.06262570275735	4.01533056112699	3.75695886896799	3.77203980915078	3.95459747039423	4.22371175996201	0.117924868050397	0.79924199198679	0.922485593889919
Merged-chr3-154288830-4	chr3	154288731	154288931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41729.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	5.25276471993772	5.39146589877433	5.25365492140265	5.64601151931155	5.30418091661822	5.29667794272732	5.25898672525229	5.37090250053102	-0.197038837610124	0.5025441397864	0.769773167614025
Merged-chr18-68301289-2	chr18	68301189	68301389	+	712.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153794)	promoter-TSS (NM_153794)	869.0	NM_001361003	67897.0	Mm.27544	NM_026440	ENSMUSG00000009535	Rnmt	2610002P10Rik|AI848273|Rg7mt1|mKIAA0398	RNA (guanine-7-) methyltransferase	protein-coding	2.85452064444466	3.20627434819107	3.5396633801839	3.03801083031538	3.23342910267843	3.70730067435606	3.37092453772928	3.32716811540174	0.851981888926786	0.155768994494822	0.441609163147605
Merged-chr9-121371732-4	chr9	121371640	121371840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357973, intron 1 of 5)	intron (NM_001357973, intron 1 of 5)	4782.0	NM_175114	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	6.92565354773465	6.58958297280194	6.72903334753676	6.36536428697017	6.694923239463	6.60037286141276	6.66596733106595	6.48928678097289	-0.0484787446814604	0.830659151881661	0.935017440942484
Merged-chr3-105000862-4	chr3	105000758	105000958	+	755.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39149.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	4.41933736863339	4.15789032722401	4.33888680467712	4.36284216733473	4.26955907276152	4.33248055403177	4.14155108729069	4.10766864042184	-0.262373861571342	0.502089929727068	0.769457185302407
Merged-chr8-121643594-5	chr8	121643434	121643634	+	958.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080855, intron 1 of 12)	intron (NM_080855, intron 1 of 12)	8399.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	4.5826928409923	4.83324126537899	5.81514745310289	6.05983653105717	4.83139108866431	4.33080412704439	5.14068622188706	4.67449042091973	-1.29076524625486	0.076269932752824	0.298263009064823
Merged-chr15-95797803-4	chr15	95797696	95797896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	6953.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	5.28268415704725	5.11613835089581	5.19539888817838	5.29971969391012	5.21197616342411	4.6161302650245	5.2571732505235	4.80356243667208	-0.408084533967018	0.222963851837686	0.531069778572449
Merged-chr10-75222782-4	chr10	75222686	75222886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145826, intron 2 of 18)	intron (NM_001145826, intron 2 of 18)	10396.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	8.99903192868188	9.32950992916117	9.22146462682316	9.08774042421781	9.34692133959259	9.56903990138068	9.36071616428209	9.24616061629324	0.271101919348328	0.0785071059551201	0.303220863572603
Merged-chr7-45567913-3	chr7	45567797	45567997	+	939.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025330)	TTS (NM_025330)	-2256.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	3.63530991280287	3.69721660795777	3.89372919753534	3.84954357297683	3.87030260347944	3.69363572513553	3.87693482066468	3.79448785463787	0.104997145373237	0.816132422522274	0.929211089826974
Merged-chr4-135272909-4	chr4	135272817	135273017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013885)	promoter-TSS (NM_013885)	-157.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	9.1702272804477	9.32659032552166	9.18413473290532	8.89330606477776	9.16121960599351	9.37788173417025	9.23963854073424	8.90063679721154	0.0383842535800585	0.822914052687027	0.932185203682946
Merged-chr15-84231287-4	chr15	84231197	84231397	+	988.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133167)	promoter-TSS (NM_133167)	-746.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	5.31750376219055	5.15176219183914	4.83052234025616	5.35187571964968	5.22516967990566	5.40179093863327	5.32033978638659	5.22478491971442	0.17978594388424	0.558878868428331	0.803418002501519
Merged-chr7-29442002-3	chr7	29441920	29442120	+	936.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081028, intron 2 of 22)	intron (NM_001081028, intron 2 of 22)	63440.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	3.65323104160745	3.77028236088709	3.54352475534128	3.90881510431968	3.45262354119533	3.40414469732254	3.6391147013738	3.89119545706431	-0.395760176918429	0.433240386597708	0.722830392839943
Merged-chr15-76899862-4	chr15	76899768	76899968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025536)	promoter-TSS (NM_025536)	-73.0	NM_025536	66398.0	Mm.291716	NM_025536	ENSMUSG00000055041	Commd5	2310065H03Rik|AI854466|D15Ertd81e|Hcarg	COMM domain containing 5	protein-coding	5.9180930712044	5.8461690325467	5.65402321584396	5.52128602301827	6.01371187337908	5.71963184181561	5.97242978413855	5.70251284124849	0.224656324944161	0.39820452324229	0.696424967686257
Merged-chr9-122950958-4	chr9	122950860	122951060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010620)	promoter-TSS (NM_010620)	40.0	NM_025419	66202.0	Mm.268307	NM_025419	ENSMUSG00000032551	1110059G10Rik	-	RIKEN cDNA 1110059G10 gene	protein-coding	6.52820256207196	6.25006838497733	6.32113890226705	6.29967854426442	6.80288774539719	6.60541767875484	6.30742772196075	6.38986913809558	0.298011024340193	0.197689850040373	0.499044730396766
Merged-chr10-40125359-4	chr10	40125263	40125463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	16891.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	8.34903802631512	8.35592922653216	8.51413286477364	8.50874896897711	8.30660780801994	8.32673744436622	8.72148643632336	8.30042084506204	-0.0134144770787621	0.937286961509923	0.977282228830088
Merged-chr8-11473244-4	chr8	11473161	11473361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-4668.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	5.40782324972846	5.47277050790139	5.69768837253454	5.75541108485837	5.35944303016498	5.05214666499183	5.64515840588855	5.49049270184886	-0.338519473304103	0.252196522419976	0.563542923002808
Merged-chr9-111310146-4	chr9	111310048	111310248	+	865.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-1591.0	NM_001164659	320429.0	Mm.270754	NM_001164659	ENSMUSG00000062296	Trank1	A230061D21Rik|C030048J01Rik|Gm187|Lba1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding	4.2153342633743	4.49559116518781	4.63500957934323	4.49167918007428	4.40595129771755	4.29047888209865	4.29242517409303	4.66673877337615	-0.106392041022687	0.781281661087288	0.914858982946737
Merged-chr9-27026857-2	chr9	27026757	27026957	+	864.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_178027, intron 1 of 5)	intron (NM_178027, intron 1 of 5)	3237.0	NM_178027	69091.0	Mm.218717	NM_178027	ENSMUSG00000031988	Vps26b	1810012I05Rik|2310075A12Rik|AI848392	VPS26 retromer complex component B	protein-coding	3.08576475498672	3.03736029156015	3.08614412668412	2.95712610442645	3.34484014181358	2.92271610059992	3.07517092597398	3.45372513776398	0.714095204844572	0.216962148357166	0.523709602479473
Merged-chr10-111389103-4	chr10	111389002	111389202	+	752.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84125.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	3.85389820449933	3.47350798930544	3.35983823321414	3.576240427933	3.76698175190283	3.87964636980897	3.58891020370922	3.80567700998556	0.56913096181132	0.241216174238156	0.551826382531906
Merged-chr7-6410262-4	chr7	6410168	6410368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4907.0	NM_001134752	100042450.0	Mm.416919	NM_001134752	ENSMUSG00000093536	Smim17	Gm16532	small integral membrane protein 17	protein-coding	5.8570374895126	5.96868726129925	6.05793698475771	6.13385074732526	6.00493593023611	6.00966799249287	5.96420068235181	5.87768876395068	-0.0834375788467153	0.727219274543872	0.891415938946722
Merged-chr19-40663260-4	chr19	40663166	40663366	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	3496.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	5.16210313846881	5.038301202913	5.33739385158546	5.13603007615399	4.95778293538428	4.94282084183647	5.22703704075025	4.95733853220243	-0.273094100973675	0.376581234921507	0.679270057030434
Merged-chr2-153090750-4	chr2	153090640	153090840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17728.0	NM_001172117	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	7.62582204866022	7.6883817621732	7.62711313627568	7.47871449423626	7.51144912654251	7.66867651821421	7.8017000496123	7.75982487955034	0.110550594098705	0.525498751371094	0.783274779873425
Merged-chr14-66124489-4	chr14	66124396	66124596	+	900.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271402)	promoter-TSS (NM_001271402)	26.0	NM_001271402	13850.0	Mm.15295	NM_007940	ENSMUSG00000022040	Ephx2	CEH|Eph2|SEH|sEP	epoxide hydrolase 2, cytoplasmic	protein-coding	4.6283403725749	5.17523799827362	4.74514702045975	4.87066770277754	4.55573106377279	4.49080657517558	4.68541361563131	4.35754098602307	-0.741745083332116	0.0425739925484868	0.209581528184532
Merged-chr4-132510548-4	chr4	132510440	132510640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144907)	promoter-TSS (NM_144907)	-84.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	7.90733317956634	7.95176998789012	7.70684052261345	7.56166934402986	8.16037324115949	8.09328380221129	7.9196035362852	7.91757263712938	0.3188627606237	0.0753576310120352	0.29645502904377
Merged-chr9-22313454-4	chr9	22313358	22313558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5820.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	7.39557537068873	7.8670692886284	7.63913971162438	7.82026182792093	7.74328195102611	7.3132752506771	7.67551191786141	7.54621941464305	-0.151134674834112	0.441983973059633	0.728813816856128
Merged-chr2-164083807-4	chr2	164083708	164083908	+	894.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021420, intron 3 of 10)	intron (NM_021420, intron 3 of 10)	9630.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	4.55092262997947	3.9403369156698	4.36711886465081	3.92826464167457	4.28486347417229	3.95512566888429	4.34658585913445	4.05037783162232	-0.0970640907223217	0.829173685098097	0.934397133080848
Merged-chr4-59928581-4	chr4	59928474	59928674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13518.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	5.83146715265164	6.1079261230604	5.65059424031252	6.04770058435785	5.97394696751659	6.10206046630642	6.40550149645811	5.72732773550803	0.22462293016672	0.412768367015905	0.707787832411092
Merged-chr16-95703417-3	chr16	95703338	95703538	+	996.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011809, intron 1 of 9)	intron (NM_011809, intron 1 of 9)	1031.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	4.18923347850266	4.72956771481121	4.28375430473005	4.10027545882786	4.20507438222388	4.58366979693151	4.26470214408718	4.18734025192685	-0.0698770175126868	0.868436612531927	0.950742877146131
Merged-chr15-31586672-4	chr15	31586581	31586781	+	858.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181588, intron 4 of 5)	intron (NM_181588, intron 4 of 5)	14858.0	NM_001348035	12465.0	Mm.282158	NM_007637	ENSMUSG00000022234	Cct5	CCT-epsilon|Ccte|TCP-1-epsilon|TCPE|mKIAA0098	chaperonin containing Tcp1, subunit 5 (epsilon)	protein-coding	3.82960517542245	4.09977547147941	3.93533627641126	3.87390138673873	4.21615157788896	4.20257177306648	3.91906781302539	3.88160245719435	0.357015711054799	0.40696975216821	0.703406827972926
Merged-chr19-3686757-4	chr19	3686645	3686845	+	955.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008513)	promoter-TSS (NM_008513)	-181.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	4.91965832726877	4.54039395324761	4.71086690152108	4.58231214613911	4.82139890813229	4.72432164462453	4.44024000847872	4.81679894002337	0.0597093350934429	0.866449786260818	0.949970415370354
Merged-chr2-128871867-4	chr2	128871725	128871925	+	962.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024237, intron 1 of 7)	intron (NM_024237, intron 1 of 7)	7893.0	NM_024237	70370.0	Mm.5107	NM_024237	ENSMUSG00000027386	Fbln7	1600015H20Rik|AI464334|TM14	fibulin 7	protein-coding	4.78167066558095	5.10770170550376	5.24292631278857	5.66134121342535	5.16927195334968	5.00320222324375	4.91892581291945	5.17843787109919	-0.346361508793285	0.3262845814251	0.637829440170333
Merged-chr11-69682047-4	chr11	69681941	69682141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163571)	promoter-TSS (NM_001163571)	43.0	NM_001163571	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	7.58964922473898	7.81244991378474	7.35873945158765	7.31915744464367	7.77368152525487	7.83692797129717	7.80766906427269	7.6205458311726	0.305211295173475	0.109589393407322	0.365532494533261
Merged-chr13-58067385-3	chr13	58067284	58067484	+	986.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 6 of 16)	intron (NM_001195075, intron 6 of 16)	35044.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	4.49800190613365	4.55825689322259	4.87048030866788	4.6175854030574	4.65307559790318	4.58560563408037	4.29522183958785	4.76679350269037	-0.112311377286819	0.759043331213651	0.905467910117288
Merged-chr13-52982131-2	chr13	52982031	52982231	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1092.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	3.03311656781135	3.07322133442849	2.83946409503914	2.43313326550242	3.16448377794444	3.08405718456928	2.9610071359333	3.20064904204238	0.994442601002736	0.143765266445935	0.422243362919547
Merged-chr18-34887536-4	chr18	34887436	34887636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	26329.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	8.10210854547586	8.44337677909871	7.87211084012518	7.96298552866198	8.2796380255033	8.1743142031716	8.451460363251	7.99821596832781	0.158763444715759	0.415213243356733	0.709525428617195
Merged-chr1-125519381-5	chr1	125519270	125519470	+	830.960022	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41225.0	NM_001356294	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	4.0522326138621	3.96096068677198	3.96223304908022	3.82112519237437	3.83159604179143	4.03602969814789	3.68898001387647	3.75700930063441	-0.314623100744357	0.48030613703079	0.755880309706485
Merged-chr2-132252745-4	chr2	132252667	132252867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011045, intron 1 of 5)	CpG	413.0	NM_011045	18538.0	Mm.7141	NM_011045	ENSMUSG00000027342	Pcna	-	proliferating cell nuclear antigen	protein-coding	7.07585895028169	7.16416974314092	6.96432991786927	7.00734602628017	7.06860621110005	7.16721779895731	7.29937594931414	7.01075517180746	0.116590352257938	0.536320668963081	0.790351309776846
Merged-chr15-86166371-4	chr15	86166274	86166474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-19354.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	5.8664750791048	6.08793837653767	6.49145725383391	6.8168927989254	6.30091452711437	5.79377334210894	6.67504293053165	6.20312892207603	-0.146612663759845	0.639586093690454	0.847607151813091
Merged-chr11-46480697-4	chr11	46480610	46480810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_134250, exon 7 of 7)	3' UTR (NM_134250, exon 7 of 7)	25779.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	7.79280100379515	7.71673402804862	7.96556508755057	7.88194895105409	6.92204093158934	7.24571547142797	7.36289673632827	7.25620357602264	-0.858564278031642	4.69226433525633e-06	0.000140038022272205
Merged-chr10-80199663-4	chr10	80199543	80199743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	20161.0	NM_007909	13637.0	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	5.27771856214141	5.21957612651042	4.89188970567318	5.22220144396143	5.38152022068736	5.35893726130839	5.52229206030457	5.27496869375951	0.39780551494169	0.175103653588826	0.469831987288867
Merged-chr4-136884706-4	chr4	136884644	136884844	+	852.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009777, intron 1 of 2)	intron (NM_009777, intron 1 of 2)	1433.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	3.75050547369322	3.61498607532546	4.42452966142256	3.96417085403619	3.92712504295263	3.75443031520309	3.73627032111919	3.85523514402819	-0.4167280440659	0.396922557064864	0.695533005645493
Merged-chr16-43363897-1	chr16	43363797	43363997	+	809.0	f0_c57.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	56299.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	3.71090636886065	3.80068343675621	3.71141092255544	3.52280667499833	3.78911930791674	4.08685818246651	4.07467568919583	3.86619009000801	0.799378023149444	0.076021571325272	0.297838946738032
Merged-chr8-110919801-4	chr8	110919691	110919891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009179)	promoter-TSS (NM_009179)	-74.0	NM_009179	20444.0	Mm.200388	NM_009179	ENSMUSG00000031749	St3gal2	AI429591|AW822065|ST3GalII|Siat5	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding	5.96385556805088	6.23821617167414	6.67464573263404	6.27245625032002	5.58993257702762	5.8889503852975	6.1467193905395	6.37333332238017	-0.43796897072034	0.130184437309583	0.401586493035134
Merged-chr1-146968137-4	chr1	146968031	146968231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	470444.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	7.22801958441144	7.32828811634809	7.46870734850061	7.43872993215342	7.34578395303662	7.24245489263388	7.00430307791893	7.10919742365346	-0.250017567011593	0.184717970201759	0.482355286557745
Merged-chr19-8840618-4	chr19	8840555	8840755	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290823, intron 1 of 10)	intron (NM_001290823, intron 1 of 10)	152.0	NM_001290823	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	4.80764208576837	4.56138416769904	4.90936277217599	4.47776157870808	4.43596255896763	4.83332658986253	4.5154869954134	4.83969850626825	-0.0559541661314937	0.879845099956963	0.955009601536912
Merged-chr18-9377538-4	chr18	9377401	9377601	+	910.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026484, intron 3 of 9)	intron (NM_026484, intron 3 of 9)	72653.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	4.49621224800775	4.45080897600564	4.65398070073028	4.38635931526082	4.80028022612948	4.39717713233298	4.59482802820446	4.45163339542828	0.205934652092708	0.575687261541606	0.813185666420437
Merged-chr10-68279611-3	chr10	68279524	68279724	+	852.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023598)	promoter-TSS (NM_023598)	-898.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	3.28704915373347	3.50261567573422	3.28744938902692	3.29962539600271	3.58033407058783	3.57219739725625	3.33419739387296	3.22401234349945	0.327313113062719	0.531752711671031	0.787598607154677
Merged-chr11-76562330-4	chr11	76562210	76562410	+	964.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198894, intron 1 of 22)	intron (NM_198894, intron 1 of 22)	9074.0	NM_198895	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	4.81200246622977	4.62732861114077	4.97271075828631	4.5213858002435	4.56207073004807	4.76312955384241	4.14344416227051	4.54512449525103	-0.462753750985078	0.23074219403797	0.540242548931978
Merged-chr2-153544052-4	chr2	153543975	153544175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14104.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	7.45554523874815	7.14122808537896	6.89540023004787	7.4073568522452	7.23864777181386	6.89398120077602	6.94083577263223	7.09502163192245	-0.266980681983486	0.214465658664557	0.520277124777086
Merged-chr7-4370654-3	chr7	4370530	4370730	+	913.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163014, intron 6 of 7)	MTA_Mm|LTR|ERVL-MaLR	27114.0	NM_001163014	243816.0	Mm.248662	NM_001163014	ENSMUSG00000078810	Gp6	9830166G18Rik|Gm469|Gpvi	glycoprotein 6 (platelet)	protein-coding	3.90653760072291	4.3007995892714	4.0182968535616	3.6259112752691	4.42393156983471	4.34498626117571	4.58571394582966	4.4630252654526	1.20857773232134	0.00468901144373231	0.04531692403984
Merged-chr13-5875635-4	chr13	5875561	5875761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14172.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	6.40401294422548	6.6195006363885	6.56781540703362	6.79658257713971	6.16649300435051	6.39535594803465	6.1662030994192	5.81572961016258	-0.694018026896998	0.00386737014583855	0.0390406381521263
Merged-chr5-149286161-3	chr5	149286048	149286248	+	850.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009663, intron 4 of 4)	intron (NM_009663, intron 4 of 4)	21144.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	3.85108719512855	3.42543613099341	3.70392145623996	3.99517285414547	3.75799981507889	3.71059412239212	3.73982644177814	3.64863591579822	-0.172869177608906	0.724352519368307	0.890155349115463
Merged-chr7-24395065-3	chr7	24394877	24395077	+	903.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4651.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	2.30473821597248	2.18579360869172	2.64681590180482	2.28400264009238	2.61714426189943	2.69286540969955	2.63610221760055	2.58374840072072	1.48166112039038	0.0430459214026537	0.211089606580743
Merged-chr2-127087454-3	chr2	127087346	127087546	+	886.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 5 of 7)	RMER6B|LTR|ERVK	16789.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	3.5442078340572	3.63968504789081	3.54468330838487	3.41717676163418	3.60963497379959	3.48121549575939	3.86501712196406	3.54276030399772	0.326640244826433	0.502140948109659	0.769457185302407
Merged-chr16-92058248-4	chr16	92058135	92058335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017391)	promoter-TSS (NM_017391)	-87.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	7.04834980420301	7.22924098826127	6.849235771769	6.89203197232087	7.1393785653947	7.59703824362177	6.93795641530332	7.32037954737783	0.349720686240067	0.11093830816625	0.367996916626224
Merged-chr11-11762227-4	chr11	11762112	11762312	+	970.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025597, intron 7 of 7)	intron (NM_001025597, intron 7 of 7)	46750.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	4.49989185271465	4.76658821567281	4.62496033212291	4.33720737603139	4.78005124126019	5.07564829809669	4.39107467571412	4.40782575664344	0.29604502490759	0.448963592773615	0.734149178020013
Merged-chr1-175936615-4	chr1	175936536	175936736	+	715.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16307.0	NM_001290692	226720.0	Mm.11282	NM_001290692	ENSMUSG00000104158	Becn2	Beclin-2|Gm104	beclin 2	protein-coding	4.02210481600053	3.86308238705524	3.87424702706441	4.07019216228443	3.93875925518347	3.82553897490487	4.05069731588093	4.19427595557319	0.10861941333776	0.801093305095243	0.923337043240231
Merged-chr10-117684892-4	chr10	117684790	117684990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027468, exon 9 of 9)	3' UTR (NM_027468, exon 9 of 9)	25868.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	6.10980843037441	5.87707552154972	6.26338205185039	6.57476612654234	6.15531086432012	5.94182913543081	5.56478092526511	6.0653423730095	-0.447289451958677	0.114902245453171	0.375120347294535
Merged-chr6-87745409-4	chr6	87745323	87745523	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 2 of 7)	intron (NM_001159697, intron 2 of 7)	14554.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	4.51903109739749	4.58716917924498	4.68628944382864	4.88680792639479	5.01764497369907	4.45870634581754	4.70256684523245	4.89795867964815	0.219076958578702	0.549001281524334	0.797790253922268
Merged-chr8-11450882-3	chr8	11450802	11451002	+	877.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27027.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	3.58812165265444	3.59817928779092	3.53273313138973	3.81233523954532	3.88717407184679	3.39401761672478	3.62767544064483	3.69141413768573	0.0721241430931668	0.885210585500375	0.956936716928815
Merged-chr18-67933981-4	chr18	67933860	67934060	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	CpG	787.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	4.91568954434121	5.04862569073775	5.44846036605401	5.24242960274332	4.70532212240104	5.01724945103374	4.81802255965713	4.87597031801764	-0.649304086862633	0.0490872626416759	0.229026758168997
Merged-chr2-103945090-4	chr2	103945001	103945201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12894.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	6.66814198005477	6.29351274014713	6.47045060568848	7.12968938421313	6.69427892909634	6.70070336777906	7.05845972989738	6.78151822727232	0.165226408460741	0.524355830385155	0.782865729438594
Merged-chr9-73044291-4	chr9	73044195	73044395	+	927.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023635)	promoter-TSS (NM_023635)	-515.0	NM_023635	11891.0	Mm.34867	NM_023635	ENSMUSG00000032202	Rab27a	2210402C08Rik|2410003M20Rik|4933437C11Rik|ash	RAB27A, member RAS oncogene family	protein-coding	4.32683990623338	4.3099400629982	4.12708950663921	4.45134309048131	4.68628378819881	4.54715460118508	4.5583847047582	4.72077955754871	0.698052406969549	0.0591985868013916	0.256354335337121
Merged-chr12-45081787-1	chr12	45081687	45081887	+	898.5	f0_balb.idr	Intergenic	Intergenic	-7304.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	3.40326722367095	3.46276094046916	3.65604470071959	3.90652064853265	3.1326750479909	2.96985446297104	3.2753463363787	3.28539965633841	-1.69762239867366	0.00394074576001177	0.0395960393071538
Merged-chr7-144971193-4	chr7	144971102	144971302	+	920.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31277.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	4.60688665526765	3.971680959055	4.53296175639297	4.49902980985827	4.26498834155234	4.74039881044341	4.39170013096553	4.0735644583345	-0.090377784286117	0.833143824256919	0.936237948428556
Merged-chr12-85600505-3	chr12	85600431	85600631	+	951.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	513.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	3.86774892908463	3.88860174975961	3.81695998004601	3.84911251885337	3.93589495822758	3.88235570212537	3.94817469140271	3.96284912595098	0.21867221535638	0.607164480495891	0.829826431590188
Merged-chr8-107589035-4	chr8	107588937	107589137	+	801.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010817)	promoter-TSS (NM_010817)	-555.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	3.76772271797288	3.74418719069531	3.49038139812073	3.10149349123644	3.72375092169154	3.9880569414691	3.7519167263463	3.81505695387118	0.849461038760447	0.104973874118298	0.356374561821901
Merged-chr14-47013044-1	chr14	47012944	47013144	+	662.0	f0_balb.idr	intron (NM_001163433, intron 1 of 11)	intron (NM_001163433, intron 1 of 11)	11704.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	3.20578095916381	2.93755238959996	3.20623520023944	3.10026170925287	3.10252363458219	3.08181423419537	2.89950117843133	2.90707565895085	-0.451762118320066	0.442284329308446	0.729012256605129
Merged-chr11-88864657-4	chr11	88864577	88864777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042541)	promoter-TSS (NM_001042541)	-91.0	NM_001042541	11640.0	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding	6.9981745642666	6.96208985779832	7.12640166869379	6.87981510078559	6.70667220028862	6.72944041267688	6.79585218881887	6.75419265824407	-0.338730637325667	0.0814289548609603	0.309600532986929
Merged-chr4-8691761-6	chr4	8691748	8691948	+	935.4027710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277149, intron 1 of 37)	CpG	1442.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	4.26261392998636	3.85470122040948	4.55899244819082	4.21351224781238	4.42910843646889	4.48579865063977	4.0954957451503	4.99558650758516	0.689326479380088	0.124611249811933	0.391951700865256
Merged-chr7-43668334-4	chr7	43668211	43668411	+	905.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-3720.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	4.27855682427418	4.35218456095849	4.05991596688126	3.36253596728102	4.3614504415924	3.97706067245219	4.04197825985737	3.85095054687807	0.0188008484962643	0.971320974647788	0.989667458652484
Merged-chr2-26188747-4	chr2	26188642	26188842	+	911.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	17833.0	NM_001039653	16871.0	Mm.386765	NM_010711	ENSMUSG00000026934	Lhx3	Lim3|P-LIM|mLIM3|mLim-3	LIM homeobox protein 3	protein-coding	4.7297833378108	5.4518558855473	4.7305624348531	4.58043908760338	4.41314037830544	4.46106105568642	4.74552075343796	4.72741138174726	-0.685369676752915	0.0895719448223281	0.326714389310366
Merged-chr17-37270212-4	chr17	37270219	37270419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013819)	promoter-TSS (NM_013819)	85.0	NM_013819	14991.0	Mm.14437	NM_013819	ENSMUSG00000016206	H2-M3	H-2M3|Hmt|M3a|MuprM3|MuprM301|MuprM302|R4B2	histocompatibility 2, M region locus 3	protein-coding	6.65097265268202	7.37023520908948	7.18548020743438	6.63530163409987	7.28511770909926	7.30567239788288	7.13820963223087	7.64107406541558	0.489418685844736	0.0463873367438824	0.221345058798204
Merged-chr3-37360798-4	chr3	37360692	37360892	+	841.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008006, intron 1 of 2)	intron (NM_008006, intron 1 of 2)	12139.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	3.75317749408539	3.7272683699012	4.29093320908985	3.97464657253041	4.00895530003251	3.99205936933407	4.309546300352	4.40221316447546	0.604154046175195	0.180505749649829	0.476893733388927
Merged-chr5-115534483-4	chr5	115534451	115534651	+	877.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	B1_Mus2|SINE|Alu	-24916.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	3.25680622716975	3.34737964082443	3.6739023769646	3.07487149927369	3.45370928602255	3.37091151707414	3.11845460827676	3.48046429411497	0.0612252515988336	0.913632418635846	0.967602450027517
Merged-chr5-23415963-4	chr5	23415878	23416078	+	796.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18375.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	3.86279084977481	3.71578239954926	3.58077059724149	3.81983609703016	3.95610701908692	4.0838773169023	4.11766703358352	3.95883480662169	0.760849294824948	0.0825062266542806	0.311880547372546
Merged-chr11-32554931-4	chr11	32554814	32555014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	21648.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	5.5589662746438	5.571052166994	5.32400329940749	5.70213981676175	5.79382603362379	5.76042821158553	5.3907879217281	5.47266934813843	0.107771470092989	0.702695822167652	0.880373386414042
Merged-chr14-14068823-4	chr14	14068718	14068918	+	968.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139227, intron 4 of 11)	intron (NM_139227, intron 4 of 11)	52086.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	4.45619122711395	4.27056786155345	4.37047579030744	4.87332335647869	4.69913379110263	4.30475502535214	4.43667506186649	4.27530579189174	-0.189367862694822	0.646531449083573	0.851366985708531
Merged-chr3-52268348-4	chr3	52268221	52268421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019739)	promoter-TSS (NM_019739)	-16.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	7.18609948354059	7.0218610979314	6.66004205274749	6.83969814106989	7.20657642432076	7.39665400902714	7.39078705798236	7.24683115736716	0.509704378971564	0.0112636447503568	0.0858940400348884
Merged-chr3-41552973-3	chr3	41552873	41553073	+	986.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2761.0	NM_001130184	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	4.32578411678744	4.10330005529211	4.24448829435345	4.58308715632178	3.69032149420073	3.91437261490149	3.99615460120515	4.06024025167485	-1.12433111162412	0.0109141587192211	0.0840105703656098
Merged-chr6-38534804-4	chr6	38534694	38534894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025363)	promoter-TSS (NM_025363)	-67.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	7.0396187439881	7.23249569332091	6.63259726585339	6.91916231670761	6.98113373926169	7.16828136857362	6.85272276668582	6.92282576934319	0.0134667415535789	0.94985959779174	0.98210584580111
Merged-chr1-56980213-4	chr1	56980107	56980307	+	759.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358580)	promoter-TSS (NM_001358580)	41.0	NM_001358580	212712.0	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	4.32917655310885	4.11069843517751	4.197319902053	4.366207089379	4.1208268177108	4.17372317855689	4.26802008079244	4.44693699887262	-0.0204036902871672	0.958993264233511	0.985352939262478
Merged-chr5-67426719-4	chr5	67426611	67426811	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164806, intron 1 of 4)	CpG	1088.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	5.20021137420206	4.84463249852689	5.10611686364337	5.65674985022132	5.06532489764399	4.72332438461607	5.04811148826846	5.22760158255672	-0.423944386213711	0.236504021367842	0.546570557203369
Merged-chr14-79481653-4	chr14	79481546	79481746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018765)	promoter-TSS (NM_018765)	-378.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	7.57029761180771	7.58367971548746	7.61528951278005	7.38496341216138	7.59999346428749	7.67560837587659	7.76083168541804	7.5927787869647	0.164231219464323	0.33853073260215	0.648064797414472
Merged-chr12-86884815-4	chr12	86884699	86884899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145836)	promoter-TSS (NM_145836)	15.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	7.11043182577647	7.27255217119106	7.29118839061053	6.85243816058113	7.32136114041918	7.40385333923152	7.35484295996088	7.4882252920036	0.354100338604887	0.0708369043995089	0.285380349686022
Merged-chr14-103046946-4	chr14	103046867	103047067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008392)	promoter-TSS (NM_008392)	-45.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	6.49018322521256	7.16660071619399	6.159095042393	5.88750739848114	7.56960083371395	7.64105706837922	6.91249328320145	7.05305433060525	1.12794503127593	0.00038388242614655	0.00621997887791608
Merged-chr2-11589026-4	chr2	11588924	11589124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_152824, exon 8 of 12)	exon (NM_152824, exon 8 of 12)	14175.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	5.97279121968609	5.58431969235566	6.52031216890445	5.60208774369239	5.8856853381441	5.89027060941341	5.80838752657033	5.73490717688943	-0.213903120975193	0.489676399554841	0.761934122721916
Merged-chr3-18613614-3	chr3	18613549	18613749	+	739.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-133172.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	3.27334408381948	3.4385497542133	3.68310079008485	2.93838672401523	2.89109366786747	3.4497073893418	3.42801648920614	3.21060143540977	-0.344951060391413	0.579455545254571	0.815384290230806
Merged-chr9-59598799-4	chr9	59598705	59598905	+	959.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361099, intron 2 of 10)	(TTC)n|Simple_repeat|Simple_repeat	9517.0	NM_001311092	76183.0	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	5.04027805214514	5.43634545201957	5.20086779914435	4.43597966792764	5.37445975195329	4.7362086212724	4.94709490115339	5.19722662516292	0.0414113962174281	0.916077801338008	0.968912323381988
Merged-chr2-150451520-3	chr2	150451416	150451616	+	865.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310645)	promoter-TSS (NM_001310645)	-15.0	NM_001310645	668923.0	Mm.393876	NM_001177550	ENSMUSG00000068130	Zfp442	ZIPO-II	zinc finger protein 442	protein-coding	2.97161566324925	3.15320362007161	3.16479051645379	2.62059693858154	3.31454636166409	3.27898538617152	3.31861582529522	3.33103000494976	1.2823665013335	0.0356275774827796	0.187417366699489
Merged-chr11-3189119-7	chr11	3189013	3189213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 1 of 32)	intron (NM_030207, intron 1 of 32)	4350.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.71152102891903	5.5113068171066	5.46594524384623	5.47362363833578	5.95687303408619	5.91200975591639	5.24500220628286	6.21337627890125	0.56116647582768	0.0637434937865769	0.268141361578274
Merged-chr15-39771054-4	chr15	39770978	39771178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022722, intron 9 of 9)	intron (NM_022722, intron 9 of 9)	25148.0	NM_001289508	75766.0	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	8.56100112158252	8.62407818985489	8.84711364212213	8.72499857979137	8.54108678137522	8.48088846326416	8.88800185182368	8.54728178593981	-0.0876434710903602	0.598128389948098	0.825705100136066
Merged-chr18-56378117-4	chr18	56378036	56378236	+	753.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22204.0	NM_001360917	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	3.82277306909836	4.1110215221535	4.0809317039612	4.31638605996467	3.96549982116465	3.82378766584111	4.35086897372684	4.07846686955009	-0.103170561915003	0.817986715712917	0.930132058049583
Merged-chr9-107770481-1	chr9	107770381	107770581	+	777.0	f0_balb.idr	non-coding (NR_153190, exon 1 of 24)	non-coding (NR_153190, exon 1 of 24)	521.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	3.36366129751256	3.69354639367776	3.23665992584052	3.55225660241488	3.3427595690218	3.41537347517003	3.46678807822741	3.85906247460266	0.182110595515247	0.735205377693823	0.895431262597044
Merged-chr11-115420545-2	chr11	115420445	115420645	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027862)	promoter-TSS (NM_027862)	419.0	NM_183285	70382.0	Mm.276299	NM_183285	ENSMUSG00000016940	Kctd2	2310012I15Rik	potassium channel tetramerisation domain containing 2	protein-coding	3.19682024028207	3.03096873124316	3.53212718623596	2.68862136431829	3.25500870292462	3.31358500979548	3.51591494162489	3.62449236329811	1.0377084958388	0.0977356068787169	0.342560156519749
Merged-chr6-125604360-7	chr6	125604233	125604433	+	822.1904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011708, exon 15 of 52)	exon (NM_011708, exon 15 of 52)	51385.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	2.38297140214912	2.3292317074377	2.60061345935789	2.34881379886607	2.55238262400347	2.8386877448422	2.8319369497565	2.84282006091346	1.85392588393372	0.00736003509303229	0.0631373817390612
Merged-chr10-99302264-4	chr10	99302138	99302338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39007.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	7.3087478885361	7.43548947422395	7.7115317678251	7.82516327334363	7.50066758418786	7.55034427907658	7.52527536771866	7.08192411900291	-0.220130286203316	0.293370373180604	0.605957446532024
Merged-chr12-80113082-4	chr12	80113018	80113218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007564)	promoter-TSS (NM_007564)	-105.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	7.60897445091758	7.78980213276389	7.15010780444309	7.08357362820922	7.6399182780358	8.14260536741302	7.61479671367258	7.31780501812486	0.36035664202189	0.148410013193082	0.430131750358685
Merged-chr9-15046788-3	chr9	15046701	15046901	+	781.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-1323.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	3.2864056501022	3.43557039888897	3.71830186165111	3.89341591270187	3.07002409550569	3.40044232139566	3.39607957437685	3.5708422459478	-0.833188299525343	0.144083012960753	0.422810223430634
Merged-chr19-34772971-4	chr19	34772865	34773065	+	868.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25854.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	4.56325124777454	4.43326223124798	4.11015825139897	4.55185084975047	4.16902339500171	4.65641766353737	4.46441142970697	4.5609868646379	0.0703824793571924	0.859139375082049	0.946629595100632
Merged-chr18-73863613-3	chr18	73863512	73863712	+	946.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360973)	promoter-TSS (NM_001360973)	17.0	NM_001360973	71263.0	Mm.126220	NM_027741	ENSMUSG00000064036	Mro	4930507C04Rik|4933435E20Rik	maestro	protein-coding	4.30800927163402	4.04913419345846	4.30870782189149	4.23596600386283	3.70984840729748	4.06686315388025	4.02800503524025	3.99319246917909	-0.750928286544308	0.0795496401901621	0.305428009196402
Merged-chr7-144470790-4	chr7	144470686	144470886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007803, exon 1 of 18)	5' UTR (NM_007803, exon 1 of 18)	149.0	NM_007803	13043.0	Mm.205601	NM_007803	ENSMUSG00000031078	Cttn	1110020L01Rik|Ems1	cortactin	protein-coding	5.44126999711276	5.36988475698295	5.38200038869372	5.64502672728967	5.70400889136118	5.558220158923	5.72421090888195	5.65403040530112	0.311406070758227	0.249027319782352	0.560207151982062
Merged-chr9-44551331-4	chr9	44551238	44551438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24917.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	5.54091641499279	5.79222533750257	5.54187515795332	5.79906414202183	5.49565454856618	5.474280123948	5.91603814664773	5.69595166482473	-0.0541307457509401	0.844292940970645	0.940910086822444
Merged-chr12-52851000-4	chr12	52850912	52851112	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198111, intron 2 of 13)	intron (NM_198111, intron 2 of 13)	151629.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	4.3474205199312	5.0194311801076	4.24433351248707	4.45529814434219	4.90629908219598	4.83179846707458	4.78364471329982	4.76815206866424	0.567974073985386	0.139472836431557	0.415256494932941
Merged-chr10-121498842-10	chr10	121498728	121498928	+	978.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22578.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	5.6858130674216	5.32702576978351	5.88221012642919	5.68859231115014	5.49887572498422	5.08194176877433	5.31005136918878	5.20239897867342	-0.63513497206089	0.034814945823133	0.184697249024869
Merged-chr4-56222619-4	chr4	56222521	56222721	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	518804.0	NM_025271	11471.0	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Gm26657|Tact1	actin-like 7b	protein-coding	5.68241434249907	5.36968767747325	4.82185993494028	5.10304938145891	5.33871098958186	5.51450413590518	5.58319355050404	5.76871161538163	0.492817653129629	0.130088880507679	0.401507102056801
Merged-chr1-183599448-4	chr1	183599333	183599533	+	896.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149544.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	3.81949099481353	3.52901871110793	3.58961619870433	4.08141763133083	4.07644913027438	4.13917829442853	4.04216754183668	3.91935340468095	0.692090689181866	0.150428249107882	0.433044538821344
Merged-chr11-72217252-4	chr11	72217135	72217335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163728, exon 1 of 1)	3' UTR (NM_001163728, exon 1 of 1)	-1643.0	NM_026068	67279.0	Mm.159496	NM_026068	ENSMUSG00000020801	Med31	3110004H13Rik|CGI-125|l11Jus15	mediator complex subunit 31	protein-coding	6.34892220861943	6.22793135951184	6.38352159578549	6.48273761797552	5.78357970005215	5.73034080857998	5.87704260821552	6.08233073897201	-0.773318928986044	0.00120133326778841	0.0155783750533634
Merged-chr11-48994204-4	chr11	48994102	48994302	+	849.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1956.0	NM_011579	21822.0	Mm.15793	NM_011579	ENSMUSG00000078922	Tgtp1	Gtp2|Irgb6|Mg21|Tgtp	T cell specific GTPase 1	protein-coding	3.86632877122412	3.57447825303738	3.91694390866194	3.84247363346036	3.8597911899726	3.70181793644576	4.23835768470383	4.13870117815368	0.538511888240245	0.242878440029969	0.553795831851015
Merged-chr7-122289810-4	chr7	122289672	122289872	+	937.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 1 of 16)	CpG	647.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	4.55935704790582	4.25760982281536	4.2432980422472	4.36312515646067	4.06940740497128	4.06378775865796	4.13231386551689	4.32754577307374	-0.524250559583824	0.189677973740101	0.488656429579305
Merged-chr17-28435117-4	chr17	28435024	28435224	+	945.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 3 of 10)	intron (NM_010220, intron 3 of 10)	51025.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	5.58460311655823	4.98871671136162	5.09211820996891	5.74386502269277	5.45486897509455	4.91135743158259	5.26273670337821	5.28531440605118	-0.278890174321418	0.422997970771214	0.714947226783278
Merged-chr19-45056475-4	chr19	45056371	45056571	+	918.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001178013)	TTS (NM_001178013)	8895.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	4.54443010511098	4.4196286592169	4.46414654590035	4.79525141782585	4.31306879595649	4.14524518841827	4.48458899553109	4.61822972609253	-0.405483009836218	0.296979936508089	0.609027482805879
Merged-chr5-99602940-4	chr5	99602846	99603046	+	841.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	126114.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	3.99062275982252	3.98235557522909	4.32719924936442	4.50944685280571	4.01098605792612	4.45562222717564	4.17538499153725	4.51950289302498	0.154129535012868	0.727019418095388	0.89133085313418
Merged-chr16-33080230-4	chr16	33080130	33080330	+	735.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172823, intron 6 of 16)	intron (NM_172823, intron 6 of 16)	17709.0	NM_172823	239833.0	Mm.131951	NM_172823	ENSMUSG00000022802	Lmln	5330415H22Rik|AI465495	leishmanolysin-like (metallopeptidase M8 family)	protein-coding	3.83316460281103	3.54322289571503	4.02296578219459	3.67228657000704	3.99831342842485	3.90210471323334	4.0474616509434	3.72547452082407	0.446674724718585	0.33121309956274	0.642422181260145
Merged-chr17-26544573-3	chr17	26544490	26544690	+	984.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16922.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	3.49332014238199	3.51737754300277	3.60595647250436	3.2227463862382	3.81578499984904	3.87856431322751	3.48057513156591	3.70698281531568	0.883574703820951	0.0753739780964458	0.296467674557991
Merged-chr1-191025505-3	chr1	191025437	191025637	+	965.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027298, exon 1 of 2)	non-coding (NR_027298, exon 1 of 2)	186.0	NR_027298	100125339.0	Mm.472263	NR_027298	ENSMUSG00000097845	A230020J21Rik	-	RIKEN cDNA A230020J21 gene	ncRNA	4.22450644839201	4.08937115147613	4.30938124381235	3.96102898274417	4.28972327075727	4.05570600280046	4.06999636175353	4.22251381561858	0.0793329569206216	0.847096199498592	0.942206430226301
Merged-chr2-164913252-1	chr2	164913152	164913352	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-1502.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	3.74733786219351	3.31393273010848	3.42668867916204	3.70195340177302	3.39949744858614	3.71477267177675	3.52904097855716	3.79199971062716	0.147417993330695	0.774758809434071	0.912015476959047
Merged-chr13-78237307-4	chr13	78237203	78237403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045195)	TTS (NR_045195)	-38430.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	5.4256312296848	5.44062814754297	5.7985789096182	5.33074207766657	5.52409098752247	5.20403046040524	5.3705112310985	5.58491276999055	-0.111083608601473	0.704586684363545	0.881307709007534
Merged-chr15-5607619-6	chr15	5607523	5607723	+	955.8472289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111305.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	4.68260663380495	4.62202148655602	4.96999926246632	4.97963907196037	4.8149353376836	4.68933634626705	4.66175990420647	4.86670713511825	-0.14510058162604	0.67192467271822	0.864972533221387
Merged-chr19-32279673-3	chr19	32279559	32279759	+	905.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168525, intron 2 of 9)	intron (NM_001168525, intron 2 of 9)	-68646.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	3.91640656573147	3.98855257763869	3.96317215697037	4.29318189770218	3.76356730350618	3.65388657650984	3.52492934379357	3.47109309563474	-1.32501766045759	0.00663206720596106	0.0584671676558215
Merged-chr18-23430776-1	chr18	23430676	23430876	+	1000.0	f0_balb.idr	intron (NM_001361217, intron 1 of 20)	intron (NM_001361217, intron 1 of 20)	15367.0	NM_001361217	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	3.48629069739928	3.89948753682914	3.59295528973879	3.75501839890431	3.50109160049681	3.35653250332683	3.2341226474311	3.17482508036077	-1.24891496103604	0.0220890047879098	0.136874142230228
Merged-chr19-7557443-4	chr19	7557352	7557552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139269)	promoter-TSS (NM_139269)	-7.0	NM_139269	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	5.49491755884101	5.62162603716213	5.70314217406108	5.67183504025781	5.16160182700653	5.58444996099481	5.62578477833548	5.54706488660093	-0.256743820008718	0.360711113063736	0.665956879382999
Merged-chr5-99977773-9	chr5	99977516	99977716	+	865.074097	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077265, intron 1 of 8)	intron (NM_001077265, intron 1 of 8)	1322.0	NM_001077266	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	3.54728641177155	3.65605524838294	3.26113693306992	3.18240480273109	3.36956178423785	3.55627943743184	3.42710878406528	3.49331872109617	0.142749853568649	0.787267610991059	0.917465745172984
Merged-chr10-75517400-4	chr10	75517308	75517508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175133)	promoter-TSS (NM_175133)	-27.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	8.81134657645393	8.63195816437094	8.69154466201804	8.71378341013512	8.98590386754022	8.89966900085736	8.93654779691073	8.64147730455608	0.20219780943289	0.18620839497782	0.484113766444254
Merged-chr16-21913555-4	chr16	21913453	21913653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172821, intron 8 of 12)	Lx8b|LINE|L1	21584.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	6.79223269288708	6.45928526436781	5.60872507764685	6.30967145167897	6.60859427338008	6.62717022500242	6.41759847536265	6.77549230411304	0.37138065600137	0.194486995618061	0.494891206434022
Merged-chr7-4149373-4	chr7	4149270	4149470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175529, exon 1 of 1)	exon (NM_175529, exon 1 of 1)	502.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	6.18877889538036	6.30170518477243	6.70209511579137	6.43924670965003	6.22395958134399	6.50613950889337	6.66789897428877	6.66898363246509	0.145916925143576	0.542744506491218	0.793917205662524
Merged-chr11-109377537-4	chr11	109377414	109377614	+	795.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	MTD|LTR|ERVL-MaLR	-13860.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	3.54925136655847	3.51677878169063	3.30830108565604	3.65511146177792	3.76405580079406	3.82352350210443	3.48042488917375	3.6017032592614	0.477507088486546	0.337792793907467	0.647573413707334
Merged-chr7-101907129-4	chr7	101907046	101907246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081679)	promoter-TSS (NM_001081679)	-787.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	6.54733783743756	6.33688397961598	6.38371202379072	6.60006296118364	6.32424512837932	5.69372295077671	6.27886372678881	6.6754634112625	-0.270935397928781	0.311059028538325	0.623141661428349
Merged-chr12-33281033-2	chr12	33280932	33281132	+	882.541626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-21483.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	3.04376614701939	3.26351844411277	3.04408849292377	3.17059468696301	3.37135442360201	3.45582048023549	3.21902311417527	3.28606437821318	0.731147853262589	0.17634208822554	0.471307205534908
Merged-chr13-75825118-1	chr13	75825018	75825218	+	749.5	f0_balb.idr	Intergenic	Intergenic	-14767.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	3.94550413581968	3.69764308227837	3.85728689161337	3.65203782893112	3.27090127087529	3.88260328083198	3.58935499733194	3.42216609991857	-0.736796443092533	0.153869608868172	0.438828627679606
Merged-chr5-122274953-4	chr5	122274824	122275024	+	979.6124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9474.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	5.13608993374055	5.42400946962409	4.72537400027887	5.21008047540662	5.14231101773813	5.34110355535125	4.94215977148236	4.92547822893078	-0.107432095505797	0.748952112126288	0.901125143917866
Merged-chr9-63608985-3	chr9	63608895	63609095	+	895.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	6349.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	3.36303287525103	3.30597221663313	3.53264062174292	3.98112080050677	3.60047196685842	3.53633098658082	3.29083183391435	3.30026281645683	-0.482123847406439	0.397050677848264	0.695573922424755
Merged-chr1-87624997-2	chr1	87624897	87625097	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	4685.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	3.47466868551045	3.3560664846195	3.47511570793581	3.66845970864473	3.5136029619859	3.53061090473473	3.57146825781647	3.90885144829835	0.411881763644586	0.415090558790197	0.709483500243191
Merged-chr2-60809618-4	chr2	60809547	60809747	+	905.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	71791.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	4.82431548551487	4.47672166890998	5.00415456194343	5.04824603465772	3.85977779619877	3.93309901965078	4.15065997185381	4.36328616440197	-1.85098916233321	1.3855604235217e-05	0.000369650694849517
Merged-chr4-126109798-4	chr4	126109667	126109867	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	5810.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	5.23557864560482	5.25627096924826	5.48983650374965	5.20515001509273	4.96656893751213	5.55559920281489	5.08045965545904	5.16899175987333	-0.172816704353057	0.580700227055133	0.815887200441312
Merged-chr15-98484121-4	chr15	98484004	98484204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1421.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	6.92244281637213	6.56100833973079	6.73052511725376	6.64919563778094	6.91413812934473	6.93659790035884	6.97467467111141	6.90591103315233	0.3074873966489	0.121383019829176	0.385883071389947
Merged-chr18-47306528-3	chr18	47306411	47306611	+	966.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311097, intron 1 of 17)	intron (NM_001311097, intron 1 of 17)	62357.0	NM_018744	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	4.21501033347691	4.1050549918268	4.5132993172848	4.70788779300818	3.49965487307187	3.48342109546894	3.6329569717199	3.82484753288367	-2.33607467339146	3.83089779517501e-06	0.000117144538444932
Merged-chr6-83657283-3	chr6	83657176	83657376	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1160.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	4.31209149072121	3.90308290501893	4.95416057988485	5.08798658042796	3.97812254452696	3.8031244811915	4.19828072352951	4.70491689188966	-0.962570198999781	0.223338280257527	0.531369971937377
Merged-chr9-97534560-3	chr9	97534476	97534676	+	978.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022319, intron 6 of 17)	intron (NM_022319, intron 6 of 17)	-164618.0	NM_030219	78911.0	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding	4.0887300721676	3.62322077416669	3.59339290327579	3.64010844328412	4.10719278641936	3.77114151114593	3.94212367130547	3.7610305660938	0.474876341867507	0.315851091444222	0.627742358795675
Merged-chr15-58744651-4	chr15	58744546	58744746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78781.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	6.88368122570842	7.13526529584678	6.87123540524509	6.73171491106129	7.12607951235021	6.97775983808262	7.01447859773159	6.93314789059554	0.157237901297926	0.433876437051496	0.723256357491443
Merged-chr4-34642583-4	chr4	34642470	34642670	+	934.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151507, intron 8 of 19)	MTE2b|LTR|ERVL-MaLR	27613.0	NM_181406	109093.0	Mm.22363	NM_181406	ENSMUSG00000028292	Rars2	1500002I10Rik|PRO1992|Rarsl	arginyl-tRNA synthetase 2, mitochondrial	protein-coding	4.20392524762881	3.70460529000116	3.43707639829328	4.21064397476041	3.84607323170503	3.97284304744246	3.78446570006927	3.79764703381052	-0.245329426200189	0.630691772819327	0.843010773257472
Merged-chr10-128535363-4	chr10	128535265	128535465	+	849.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-9506.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	4.2854683500195	4.50542436067465	4.04742131311029	3.99774398672448	4.49785903114241	4.11809126841066	4.17762150433594	4.36762478470112	0.219601679605558	0.600339886791463	0.826767290075753
Merged-chr7-7299545-4	chr7	7299449	7299649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302386)	promoter-TSS (NM_001302386)	8.0	NM_001302387	12727.0	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2|clC-4	chloride channel, voltage-sensitive 4	protein-coding	7.19375678373181	7.27318516644445	6.83998419883722	6.50345773607064	7.32819664452753	7.36083303595677	7.35219861416335	7.31586202951196	0.495849057996113	0.0305752547756565	0.169363117484549
Merged-chr9-89971255-1	chr9	89971155	89971355	+	540.0	f1_balb.idr	intron (NM_001357743, intron 8 of 26)	intron (NM_001357743, intron 8 of 26)	61480.0	NM_001357743	19417.0	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	3.15601221875199	2.83055799527717	2.92045251801083	2.81732609247098	2.95880980054815	3.0935242863755	3.0890155121404	3.04222185022241	0.486134382651932	0.407399366913203	0.703636793592033
Merged-chr9-108478865-2	chr9	108478765	108478965	+	683.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008483)	promoter-TSS (NM_008483)	-997.0	NM_008483	16779.0	Mm.27560	NM_008483	ENSMUSG00000052911	Lamb2	AW211941|Lamb-2|Lams|npht	laminin, beta 2	protein-coding	2.98674468463369	3.11299563236619	2.98713589701756	2.84941943994307	2.87288234240195	2.83532418414105	2.65030884259269	3.04256410098667	-0.554148821375587	0.378226937507856	0.6808269066108
Merged-chr7-12943686-1	chr7	12943586	12943786	+	655.0	f0_balb.idr	Intergenic	B3A|SINE|B2	16270.0	NM_029809	381845.0	Mm.439896	NM_029809	ENSMUSG00000033967	Rnf225	2310014L17Rik|AV237412|C77118	ring finger protein 225	protein-coding	3.0581120186386	3.42013405397577	3.05846226462791	3.10204318099467	3.05283511954823	3.23159629241658	3.10986979620179	3.29013416527835	0.00876841550782135	0.987642170450391	0.995315979319888
Merged-chr15-6426057-1	chr15	6425957	6426157	+	715.5	f0_balb.idr	intron (NM_001008702, intron 9 of 13)	intron (NM_001008702, intron 9 of 13)	-19276.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	3.29427224614886	3.12080627648777	3.29475606204421	3.41745066148488	2.93643811121438	2.74981908671127	2.86685256483443	3.12949022318924	-1.52705969873978	0.0152622880911342	0.106172244335305
Merged-chr8-77451638-4	chr8	77451550	77451750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-65406.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	6.5654335621125	6.31434992891884	6.55072003451424	6.68076074626948	6.72087593193959	6.60997069348664	6.57925597878309	5.99449787773861	-0.0409078588572894	0.868809986123744	0.950862893339999
Merged-chr18-9507267-4	chr18	9507157	9507357	+	860.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57103.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	3.94260592566041	3.74771589520358	4.13865841698846	4.6487083105452	4.12217890914438	4.06622470711312	3.76084839469705	4.26512501373058	-0.295206494848076	0.553857772207777	0.80043514274805
Merged-chr14-75065491-4	chr14	75065408	75065608	+	953.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	49481.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	4.93533410669702	4.5887812182269	4.76415995394938	4.81909526022942	4.63471342119452	4.65352822465644	4.45638271349312	4.93278675617808	-0.219089290991539	0.53359775123885	0.788821249359906
Merged-chr2-160250105-3	chr2	160250010	160250210	+	901.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77384.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	4.21155509510794	4.27410418361521	5.08663031788559	5.10516448016479	4.51856499461793	4.49672774370451	4.64452180782711	4.58454990690324	-0.401779656409519	0.353543900459335	0.660340111018263
Merged-chr3-88407200-4	chr3	88407115	88407315	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025928, intron 1 of 4)	intron (NM_025928, intron 1 of 4)	3182.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	4.96304251215676	5.21145621489463	4.48818930866053	4.54034528939081	5.14494434773573	4.88372912669409	4.72547180446006	4.70486724022695	0.111470764944727	0.770186371996524	0.910083821330452
Merged-chr1-170218673-4	chr1	170218581	170218781	+	895.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3274.0	NM_010633	16589.0	Mm.209150	NM_010633	ENSMUSG00000026667	Uhmk1	4732477C12Rik|4930500M09Rik|AA673513|AI449218|AU021979|C820018A03Rik|KIS|Kist|P-CIP2	U2AF homology motif (UHM) kinase 1	protein-coding	4.66821089905155	4.87142648552014	4.74708892843914	4.5727969055107	4.97998452231248	4.67456031155053	4.89967491722657	4.66594282790129	0.231608387878398	0.498161745096821	0.76753657851523
Merged-chr4-111687845-4	chr4	111687730	111687930	+	916.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32180.0	NM_026470	67946.0	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	4.58555114188095	4.18252227783751	4.62781327733039	4.69893379226194	4.57488213483463	4.67721621828881	5.30266358926415	4.84890318521277	0.698073560360644	0.0759755772356407	0.297789956610995
Merged-chr16-30502711-4	chr16	30502594	30502794	+	962.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47884.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	4.97956153942894	5.49510296468111	5.01549421408234	5.16724532735088	5.16753155409062	5.00676818266832	4.76680489290645	4.90390692853466	-0.395947041130749	0.233126153353607	0.542738485953961
Merged-chr6-40594992-4	chr6	40594890	40595090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9185.0	NM_001038604	23845.0	Mm.103765	NM_021364	ENSMUSG00000029915	Clec5a	Clecsf5|Ly100|MDL-1|Mdl1	C-type lectin domain family 5, member a	protein-coding	5.97568785152763	6.36329343813914	6.19236947727982	6.37515966756923	6.16419556057412	6.40680253063338	6.32670596704132	6.08476901916309	-0.00361629301433163	0.987867394443073	0.995370064932717
Merged-chr17-70122265-3	chr17	70122160	70122360	+	916.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 2 of 14)	intron (NM_001347411, intron 2 of 14)	153187.0	NM_001347411	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	3.91402240893697	3.97674269845107	4.8618180941069	5.36778448840406	3.30921062151872	3.3505425256326	3.52379587107905	3.4620695309256	-3.8415066423446	1.23030896121877e-08	6.4296741226572e-07
Merged-chr12-36156926-4	chr12	36156780	36156980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025840)	promoter-TSS (NM_025840)	-55.0	NM_025840	66912.0	Mm.288669	NM_025840	ENSMUSG00000020547	Bzw2	1110001I24Rik|Bdm2|HSPC028	basic leucine zipper and W2 domains 2	protein-coding	7.13385729880969	6.93034264238345	7.5725264622524	7.07419106892283	6.93471103117495	7.2526622239522	7.1994852354317	7.30362535550567	-0.0265153402498137	0.903609181420088	0.964287824952031
Merged-chr6-98140947-3	chr6	98140844	98141044	+	635.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	149161.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	3.78926674635398	3.67845762975861	3.88138679348912	3.77880346317646	3.29508888307336	3.81035461781231	3.3939567821099	3.46606467483379	-0.919158405018861	0.0698740979909552	0.28289451230864
Merged-chr12-111377199-2	chr12	111377099	111377299	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_183016, exon 1 of 37)	exon (NM_183016, exon 1 of 37)	519.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	4.57603760067257	4.45194801630893	4.80128901443866	4.32538865222483	4.373117846322	4.90223347723938	4.38238203316228	4.95842307450284	0.298429493775501	0.450416426455089	0.735338736614162
Merged-chr4-134731619-4	chr4	134731510	134731710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27320.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	5.43578928097556	5.5480673772483	5.60565865767527	5.98563800378113	5.36505840864339	5.64262532103041	5.5239290268654	5.81886431815009	-0.154619987754121	0.600886548302912	0.827042514196133
Merged-chr17-5610143-3	chr17	5610030	5610230	+	672.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	ORR1D2|LTR|ERVL-MaLR	117530.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	3.53225119723685	3.4626680947585	3.16406054541647	3.34352056270644	3.02092512699084	3.07600084303053	3.21167627697751	2.96585959621711	-1.22883114878533	0.0338918484668106	0.181669393931705
Merged-chr15-24589808-2	chr15	24589708	24589908	+	831.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	823956.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	2.65049036332568	2.24445396476175	2.5853344119817	2.34453632280394	2.4589217071714	2.88409122391537	2.76098728524474	2.64943051460644	1.20489597290307	0.0966501092415641	0.340574096588254
Merged-chr11-46127993-4	chr11	46127877	46128077	+	956.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311209)	promoter-TSS (NM_001311209)	73.0	NM_001311209	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	4.25589345795052	4.27319142837905	4.20049000456269	4.54020462765657	4.94505158307079	4.77425098305514	5.24867596825414	5.41375592222064	1.59697264179578	3.66249461939876e-05	0.000860978512774654
Merged-chr7-25316710-4	chr7	25316616	25316816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160400)	promoter-TSS (NM_001160400)	-448.0	NM_001160400	269878.0	Mm.38527	NM_001160400	ENSMUSG00000045039	Megf8	AW049492|Egfl4|b2b1702.2Clo|b2b1702Clo|b2b288Clo|m687Ddg|mKIAA0817	multiple EGF-like-domains 8	protein-coding	8.20806720360947	8.21221170489117	8.60593692702243	8.3349613206462	8.15198485267599	8.106496246153	8.22900020844292	8.3505680192572	-0.174413940817511	0.30490574749813	0.617425354648188
Merged-chr17-28012985-4	chr17	28012870	28013070	+	895.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 12 of 24)	intron (NM_181413, intron 12 of 24)	67614.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	4.74086032752123	4.99991975630475	4.63187514794442	4.82424502774811	4.4005255756238	4.25116430430059	4.3598888899485	4.22920614513985	-1.11229444450581	0.00277526051544932	0.0300578618729712
Merged-chr16-94526943-4	chr16	94526863	94527063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007834)	promoter-TSS (NM_007834)	-334.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	8.12051690870194	8.0180585234057	7.77624490671044	7.85621963470282	8.15469978674993	8.10659282353167	8.28694892161105	7.84200262826731	0.208585573299053	0.243169609656757	0.554140215967931
Merged-chr7-122260296-4	chr7	122260197	122260397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-28828.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	6.56823017996446	6.75873708820758	6.64582243204828	6.62866962877506	6.66593306164546	6.18205637024135	6.33183200367109	6.30295018313734	-0.36929251051182	0.102226643214064	0.351041597710048
Merged-chr11-62749701-3	chr11	62749591	62749791	+	889.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20598.0	NM_133208	170740.0	Mm.339982	NM_133208	ENSMUSG00000005267	Zfp287	B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74	zinc finger protein 287	protein-coding	3.77525302247297	3.62039384983179	3.63096930560236	3.4481221955241	3.38277152374059	3.32526054867428	3.71301632610042	3.52241534067704	-0.401917531095557	0.429431844585847	0.720348060843589
Merged-chr8-104339440-4	chr8	104339378	104339578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1116.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	5.73595063773743	5.37205307162706	6.21052826809318	5.51475623223921	5.36791776693385	5.7328990022701	5.28758900352876	5.80281276637693	-0.297451486046785	0.357504822345803	0.663619560848277
Merged-chr18-36783161-4	chr18	36783055	36783255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305627)	promoter-TSS (NM_001305627)	50.0	NM_008214	15115.0	Mm.10528	NM_008214	ENSMUSG00000001380	Hars	MMHRS	histidyl-tRNA synthetase	protein-coding	6.74217173389403	6.47858494941672	6.54241183839488	6.44547627156804	6.86187297691201	6.73586826078922	6.9652009592191	6.64984429300292	0.378766240153052	0.0700008397635927	0.283149955875022
Merged-chr16-21192798-3	chr16	21192681	21192881	+	875.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12014.0	NM_010143	13845.0	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	2.81274376236984	3.12844984843039	3.19536252985481	3.28607012447454	3.08153176320708	3.12624010822277	3.0691014907349	3.19362168530315	-0.0366181866453174	0.950577660072789	0.982312550074733
Merged-chr15-78864053-4	chr15	78863949	78864149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-8520.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	6.05153141731872	6.30314062018895	6.05259913048445	5.86631937947966	6.24666226498933	6.11681772396468	6.10472687652889	6.35318003023515	0.222680435694814	0.356469369337859	0.662883007207157
Merged-chr4-120851175-3	chr4	120851077	120851277	+	749.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3622.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	3.76299810818045	3.42971742207804	3.71652297010338	3.37149852926268	3.29715796169936	3.56814179732411	3.25139689025924	3.85017976883815	-0.204189558696428	0.707383927823339	0.882444677286559
Merged-chr5-23617852-3	chr5	23617749	23617949	+	653.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359174, intron 2 of 16)	MIRb|SINE|MIR	-1278.0	NM_009274	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	3.58657886254587	3.49505567085507	3.42547144648209	3.57678575513691	3.31404189930882	3.35242674909298	3.71268222283922	3.47976337999431	-0.183894839931056	0.717549196676156	0.887063137541243
Merged-chr12-3360189-4	chr12	3360088	3360288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4944.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	6.82099019976004	7.13991313198402	6.62452133112345	6.66452311464986	7.00383489739653	7.27472115014896	6.74475758188739	6.83132820672667	0.212945014274523	0.352264376427744	0.659438393860306
Merged-chr5-150601383-2	chr5	150601283	150601483	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001362416, exon 8 of 8)	3' UTR (NM_001362416, exon 8 of 8)	-6858.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	4.05300164196926	4.16660352530115	4.2359297192087	3.91690568177722	3.92859366705496	4.36313687611762	3.82678005925806	4.31529580085701	0.0845179054903745	0.847223734685659	0.9422142432572
Merged-chr4-105239775-3	chr4	105239659	105239859	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82412.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.66390133477573	3.5323034955384	4.12543467661261	3.76773137825361	3.66315722481113	3.72588590414913	3.98551880598204	3.54663969890548	-0.144020386651587	0.770512108480603	0.910208520553554
Merged-chr15-53344027-1	chr15	53343927	53344127	+	761.0	f0_balb.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	2156.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	3.2594025472841	3.25550312683115	3.37465538638865	3.47357894701956	3.36900786731267	3.37094098407673	3.30630154569776	3.37283937496955	0.00738991938464429	0.988636025627516	0.995489024715882
Merged-chr15-12118592-4	chr15	12118472	12118672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358823, intron 2 of 18)	CpG-4794	721.0	NM_001358823	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	5.61289294391499	5.20162846275078	5.70980921974493	5.28238926304796	5.30437991271116	5.41701352423215	5.36985238416777	5.77305530284392	0.033765592322233	0.911651754240236	0.966984475532229
Merged-chr4-32574714-3	chr4	32574614	32574814	+	762.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 3 of 4)	B3|SINE|B2	-3052.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	3.22553874113307	3.12767133882713	3.40319655843554	3.57382408105492	3.39544409413874	3.51701217532311	3.39003904457235	3.45532925317221	0.276393292330307	0.607805183358856	0.830283203337722
Merged-chr11-21237248-3	chr11	21237165	21237365	+	770.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1767.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	3.31044607076986	3.4422834371636	3.58341802270775	3.30077191945376	3.22822807752839	3.54167316273294	3.17533707739104	3.75998354391344	0.122264396972727	0.823702299077637	0.932387119655244
Merged-chr1-54810459-5	chr1	54810443	54810643	+	941.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 2 of 27)	intron (NM_001081433, intron 2 of 27)	115844.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	5.03322052408	4.54158296462329	4.56486198903317	4.60707867735078	4.63778462391638	4.61236097528176	4.41700294997547	4.18852783219816	-0.472771816539649	0.221660700520696	0.529761731915444
Merged-chr11-113751163-8	chr11	113751033	113751233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020006)	promoter-TSS (NM_020006)	27.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	4.71926156435983	4.83961232325744	4.72002639751772	4.44031675904733	4.95102426872151	5.27480584680579	4.61471841230373	5.29491704587856	0.770049136614319	0.0317641604222685	0.173878426109102
Merged-chr5-4104517-4	chr5	4104415	4104615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_020010, exon 1 of 10)	5' UTR (NM_020010, exon 1 of 10)	182.0	NM_020010	13121.0	Mm.140158	NM_020010	ENSMUSG00000001467	Cyp51	AI426508|CYPLI|Cyp51a1|Ldm|P450-14DM|P450LI	cytochrome P450, family 51	protein-coding	7.58016757594005	7.52504266191435	7.48740022580144	7.96201317039546	7.84014971090715	7.8631501099227	7.96258650726546	7.74546649081222	0.24369430224162	0.199703037147408	0.501609353558057
Merged-chr1-92652705-4	chr1	92652583	92652783	+	963.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3842.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	4.66507154512668	4.93560121839781	5.17427666454349	5.43609789935093	4.56081602850948	5.04738996608908	4.77035466737167	5.36425058450416	-0.253746228683483	0.513406268655733	0.77646733267772
Merged-chr6-86785013-4	chr6	86784946	86785146	+	872.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013471, intron 1 of 12)	B4A|SINE|B4	8538.0	NM_013471	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	4.30797891006025	4.77546217808831	4.35293810942601	4.64028333794824	4.1265511514527	4.24075875529761	3.99028046244303	4.43432132818251	-0.808194109829175	0.0478619485959408	0.225643505041096
Merged-chr2-28585376-4	chr2	28585276	28585476	+	897.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2097.0	NM_001290484	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	4.41475642058994	4.65688638158794	4.12499266840866	4.24597245005988	4.68484996979567	4.40657233112817	4.55667833741038	4.61280447838922	0.460363170428935	0.227758673120863	0.536465946363434
Merged-chr16-57593928-3	chr16	57593816	57594016	+	938.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	12951.0	NM_025599	66497.0	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	3.58997393109059	3.50775548931557	3.7499955977659	3.17200444229172	4.13730317768575	3.87161137767024	3.39725498593289	3.74771905170446	0.941936871384987	0.0782123678371887	0.302558594037133
Merged-chr11-120617931-4	chr11	120617845	120618045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347615)	promoter-TSS (NM_001347615)	0.0	NM_001347615	68671.0	Mm.21439	NM_024229	ENSMUSG00000025137	Pcyt2	1110033E03Rik|ET	phosphate cytidylyltransferase 2, ethanolamine	protein-coding	7.07823207901401	7.29526561688551	6.64330678974631	6.87794956106765	7.29757151796526	7.29120779350511	7.05558090092876	6.94963544694885	0.226619263056736	0.305548723382606	0.617941664868378
Merged-chr3-103130484-4	chr3	103130370	103130570	+	963.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177857, intron 1 of 18)	intron (NM_177857, intron 1 of 18)	2914.0	NM_177857	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	5.96781845309521	5.59010728237438	5.72423360223075	6.01818928253649	5.01630539285078	4.85575016965878	5.07034780181099	4.8056290329716	-1.61458571733167	1.32199166865215e-07	5.52867479336026e-06
Merged-chr3-95433639-4	chr3	95433532	95433732	+	964.8583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009709)	promoter-TSS (NM_009709)	-758.0	NM_009709	11863.0	Mm.250265	NM_009709	ENSMUSG00000015522	Arnt	D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051	aryl hydrocarbon receptor nuclear translocator	protein-coding	4.43874707324648	4.7194198448741	4.43942098556313	4.45786650651137	4.76018188434239	4.65619005682715	4.54526545542182	4.60293397204983	0.289457156263198	0.413709103645556	0.708653806814916
Merged-chr1-91094475-2	chr1	91094386	91094586	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 10 of 22)	intron (NM_008515, intron 10 of 22)	41042.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	3.13299257141809	2.68700608691137	2.89552695464704	2.76330642874086	2.9690815832739	3.13122020603506	2.94849298049659	3.13160660414965	0.73757482217722	0.225243951444225	0.533604905018683
Merged-chr2-167887893-6	chr2	167887771	167887971	+	923.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44456.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	3.90567377601681	3.98621091988223	4.4408838277082	4.10104137929867	3.99018338136382	4.45533188423525	3.83509732426204	4.19867583205232	0.0338266002064734	0.939960720884842	0.978363933407335
Merged-chr19-34599486-4	chr19	34599378	34599578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110517)	promoter-TSS (NM_001110517)	-51.0	NM_001110517	667373.0	Mm.371956	NM_001101605	ENSMUSG00000079339	Ifit1bl1	Gm14446|Ifit1c	interferon induced protein with tetratricpeptide repeats 1B like 1	protein-coding	6.37037264018284	6.52908083784072	5.92174015392243	5.68139057879156	7.08762234838164	7.11872590202965	7.17641252296114	6.87567960662393	1.31481516867448	4.15998504922829e-07	1.56834521090583e-05
Merged-chr7-19131575-4	chr7	19131465	19131665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175530, intron 1 of 1)	intron (NM_175530, intron 1 of 1)	11706.0	NM_175530	243867.0	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	9.18786068481882	9.38430657286735	9.00413274344851	9.01388230022716	8.99548054094719	9.16414508571716	9.02325313364849	8.92517247902898	-0.157051529889255	0.321058033498094	0.632807846658013
Merged-chr13-60738104-4	chr13	60737993	60738193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 18 of 26)	intron (NM_134062, intron 18 of 26)	48271.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	7.76471907719114	8.15491369905079	7.95537119888304	8.14999452824994	7.86892654762906	8.07539053884301	8.13530272940856	7.98468245355245	-0.00958379461037113	0.956523249950206	0.984691114511791
Merged-chr2-68502415-3	chr2	68502332	68502532	+	745.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-30451.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	3.77752123314149	3.84031906912893	3.87563347056535	3.88246388102988	3.58164933341626	3.40717044771278	3.9043783509708	3.8255159739325	-0.459513306733264	0.335478202062957	0.645877811487311
Merged-chr2-126707277-4	chr2	126707174	126707374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252580)	promoter-TSS (NM_001252580)	-54.0	NM_001252580	84092.0	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	7.88614211274311	8.30945892706762	7.94567956276485	7.90175209668412	8.04264032410446	8.15131473301899	8.14057877024247	8.10703169638276	0.112055758473786	0.519419471891654	0.780093652989325
Merged-chr17-5150894-3	chr17	5150795	5150995	+	885.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	155821.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	3.6971997442395	3.73541803037438	4.10782142019554	3.88713449507133	3.26548175652249	3.37231821812687	4.00849743342227	3.69561364053726	-0.75035078537906	0.164979908750847	0.455353248477123
Merged-chr9-5300228-4	chr9	5300148	5300348	+	887.3666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009807, intron 3 of 9)	intron (NM_009807, intron 3 of 9)	1731.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	4.56723588450772	4.63254920239511	4.84607556831274	4.98654415252282	5.06103347017288	4.55927525261347	4.95700097448659	4.84283962468732	0.19062787460757	0.592289654833301	0.822045146560973
Merged-chr15-64088558-4	chr15	64088446	64088646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001276462, exon 28 of 28)	3' UTR (NM_001276462, exon 28 of 28)	-28098.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	6.57358952284856	6.67023140567923	6.68052090625283	6.80697981923253	6.1454115142675	6.28150333563192	6.40886478483011	6.64645677730711	-0.463262514903326	0.0393822182977445	0.19984222686356
Merged-chr12-99561451-4	chr12	99561341	99561541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2400.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	6.59521071977279	6.45664341503113	5.60826058823512	5.87398978397039	6.12456769337334	6.38157142773044	5.72295357705939	6.143176501946	-0.120158270137375	0.701978353428749	0.879948527177235
Merged-chr7-90129472-4	chr7	90129367	90129567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146194)	promoter-TSS (NM_146194)	7.0	NR_046006	78329.0	Mm.389940	NR_046006	ENSMUSG00000097162	2310010J17Rik	-	RIKEN cDNA 2310010J17 gene	ncRNA	8.17537035020358	8.40816533158274	8.21250471434783	8.19852404386099	7.97865561162184	8.25353830308678	8.27512693274681	7.95373042127813	-0.168351904583292	0.319852638299681	0.631656381031906
Merged-chr10-121373145-4	chr10	121373054	121373254	+	908.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 2 of 13)	MTD|LTR|ERVL-MaLR	8064.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	4.52576375076095	4.44495133527449	4.6072637163924	4.79252467836134	4.67609994242439	4.77842250821324	4.37573025553799	4.43750328922476	-0.0716709801570096	0.846481477193476	0.941954402290774
Merged-chr8-8143186-4	chr8	8143104	8143304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	517569.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	6.04678322562938	6.1411836117617	5.49305294647694	5.39393593381227	6.91722529715656	6.64397601973491	6.87819380129116	6.49499045150064	1.43058002287506	2.25923949745713e-07	8.99195981308693e-06
Merged-chr8-108631280-3	chr8	108631171	108631371	+	816.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-46594.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	3.91183747327709	3.61998551723123	3.91241469688387	3.99370879840004	3.62330172141199	3.6971099308809	4.23392906230727	4.09248789543422	0.174006108509061	0.718507360275593	0.887579709565285
Merged-chr2-158028455-7	chr2	158028385	158028585	+	969.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291136)	promoter-TSS (NM_001291136)	-12.0	NM_001291134	70470.0	Mm.290810	NM_027434	ENSMUSG00000027651	Rprd1b	2610304G08Rik|2810446G03Rik|Crept	regulation of nuclear pre-mRNA domain containing 1B	protein-coding	5.31376772022671	5.27742288945812	4.96720149926318	5.08243226268545	5.55080908055305	5.70989828922889	5.16121181470199	5.7004990710892	0.68357667999912	0.0232291763370706	0.141223456380651
Merged-chr9-66543016-4	chr9	66542982	66543182	+	811.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144937, intron 6 of 14)	intron (NM_144937, intron 6 of 14)	-28489.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	2.99975860715908	3.01478047799955	2.7938883108915	3.21114595853911	3.12729108773936	3.23196717552526	3.05151315108236	3.28280537960507	0.584599228301902	0.328884102391103	0.640144325858488
Merged-chr6-6004973-3	chr6	6004901	6005101	+	881.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010063, intron 14 of 16)	intron (NM_010063, intron 14 of 16)	-27608.0	NR_040255	72249.0	Mm.443268	NR_040255	ENSMUSG00000085416	1700019G24Rik	-	RIKEN cDNA 1700019G24 gene	ncRNA	3.60275811096634	3.63365200902872	3.87900065345981	3.5862256938477	3.17752711193489	3.36504045072383	3.36734898836483	3.49424539535277	-1.12507876528772	0.0315530543532503	0.173135588637835
Merged-chr6-122339765-7	chr6	122339700	122339900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073364)	promoter-TSS (NR_073364)	-143.0	NR_073364	13619.0	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic 1	protein-coding	5.28803446300289	5.46817281761749	5.25664789574054	4.94361462229129	5.66233101011556	5.52675153276212	5.49357430956964	5.75823304436919	0.672465483281207	0.0217293009740896	0.135257535114537
Merged-chr3-88043075-4	chr3	88042981	88043181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110809)	promoter-TSS (NM_001110809)	-25.0	NM_025663	66614.0	Mm.46029	NM_025663	ENSMUSG00000028069	Gpatch4	2610029K21Rik|Gpatc4	G patch domain containing 4	protein-coding	6.03177547053723	6.25815863514533	5.89140836640565	6.21568205786979	6.31728332642598	6.394488396599	6.06691731950571	6.44276445824966	0.293283543101847	0.219254124450858	0.526748085921778
Merged-chr4-139116439-4	chr4	139116343	139116543	+	752.270813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163006, intron 1 of 3)	intron (NM_001163006, intron 1 of 3)	14594.0	NR_033745	433771.0	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	3.65138527410571	3.70153293433984	3.7575731457568	3.68680267230254	3.70751952675741	3.52577825352979	3.88404628464348	3.94332414331861	0.227645631003439	0.623097188225194	0.838884054759699
Merged-chr16-17131606-4	chr16	17131484	17131684	+	934.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022324, intron 2 of 2)	CpG	799.0	NM_022324	64136.0	Mm.30222	NM_022324	ENSMUSG00000022769	Sdf2l1	-	stromal cell-derived factor 2-like 1	protein-coding	4.94955503515611	4.87047478715432	4.73576127453568	4.86045210759869	4.87770288062575	4.60986104629273	4.59237384111461	4.97944598676849	-0.153077871647805	0.650509693942689	0.853294802585927
Merged-chr5-16424924-1	chr5	16424824	16425024	+	542.0	f0_balb.idr	Intergenic	RMER13B|LTR|ERVK	-128571.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	2.99870497865756	3.22509441566316	3.6375764493101	3.08849548824748	2.86553895894854	3.24274289654365	3.17835049104761	3.18881870208402	-0.509266644780132	0.403632800027785	0.700922982752502
Merged-chr1-190928575-4	chr1	190928454	190928654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357131)	promoter-TSS (NM_001357131)	49.0	NM_021421	52477.0	Mm.289914	NM_021421	ENSMUSG00000026634	Angel2	2610307I21Rik|5730410O10Rik|AI845692|D1Ertd396e|D1Ertd654e	angel homolog 2	protein-coding	7.50384400452942	7.4989947177897	7.51438865677358	7.55433520766819	7.48143823673373	7.67295477944415	7.67285445952964	7.5092125033929	0.0829066115339696	0.623859430894976	0.839195335242146
Merged-chr8-36094191-2	chr8	36094094	36094294	+	926.0	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172911)	promoter-TSS (NM_172911)	-634.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	3.92009894141838	3.33125462258418	3.39881698755658	3.39032544203588	3.44409264996487	3.25381446480072	3.26501538108237	3.66071385453957	-0.364063070598557	0.511330594579653	0.775335536390107
Merged-chr19-40660885-1	chr19	40660785	40660985	+	772.0	f0_balb.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	1115.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	4.59106302099723	4.28604328653698	4.43446812185473	4.48521888243292	4.332794875962	4.17209758786579	4.4945963807258	4.58877117137748	-0.111599416512777	0.769016777064808	0.909614058106851
Merged-chr2-170220582-2	chr2	170220482	170220682	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77907.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	3.52569730465192	3.29356864153703	3.00308479878857	3.01428538362096	3.40191455832813	3.43355576114723	3.1900898096392	3.31729256432361	0.439565498212308	0.437310784039302	0.725612949254825
Merged-chr5-90903718-4	chr5	90903599	90903799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009140)	promoter-TSS (NM_009140)	-200.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	8.53757412368398	8.69246960791036	8.91443240545551	8.25542837902785	8.72164835024908	8.9105480486561	8.72563754651538	8.48379021632322	0.128223526876376	0.502600271349148	0.769776320401967
Merged-chr10-88504654-4	chr10	88504545	88504745	+	882.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146690)	promoter-TSS (NM_001146690)	-675.0	NM_001146690	212862.0	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	4.10320052027457	4.69224429077972	4.19760700679287	4.26972143592326	4.17544858899477	4.072494710494	3.82075616629082	4.10136026691307	-0.718194606900364	0.10022872802713	0.347432581681266
Merged-chr10-118093950-3	chr10	118093835	118094035	+	759.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47852.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	2.48316213942028	2.35160529813349	2.4067297325498	2.25382920862691	3.05824618803404	2.86447276827523	2.68060290103445	2.86841065836794	2.83023592988711	6.03655417836279e-05	0.00132697927690452
Merged-chr5-135428949-2	chr5	135428849	135429049	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 20 of 30)	B3A|SINE|B2	-34403.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	2.89198800716677	2.89923277442939	2.68956640404522	2.54673162461237	2.83867479413183	3.06499471717815	3.15871585156509	2.89087379855597	1.05365183956912	0.0955652777420691	0.338453622470034
Merged-chr1-134083048-4	chr1	134082973	134083173	+	842.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3918.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	4.10173986763004	3.92838290105857	4.40398801569243	4.06915091649008	3.77972788349959	3.49717141852841	3.8011180371371	3.58254926514511	-1.31231328055151	0.00650394845830208	0.0576231699419322
Merged-chr2-125696433-3	chr2	125696291	125696491	+	982.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199022, intron 1 of 11)	intron (NM_199022, intron 1 of 11)	23291.0	NM_025613	58521.0	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	4.57454525551498	3.74289771306282	4.63983119811902	4.44027310672136	3.47167699855242	3.76712767257804	4.1264146048175	3.99534471291122	-1.39088635737728	0.0072697295302808	0.0625622147546677
Merged-chr6-24666438-3	chr6	24666320	24666520	+	835.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1425.0	NM_028459	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	2.98591678966039	2.88243286785115	2.98630838025662	2.90137211169986	2.72537377376013	2.83429052047939	2.91598807806975	3.09642863153859	-0.180789603361337	0.766223755869499	0.908559624172741
Merged-chr14-72564135-4	chr14	72564025	72564225	+	923.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 15 of 25)	intron (NM_207636, intron 15 of 25)	145878.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	5.06859125242808	4.49909052985691	5.27690553531847	5.45220867633455	4.95417645805743	5.07228383985397	4.63342776313865	4.81798987457541	-0.490282198872341	0.197762518385339	0.499070386139272
Merged-chr11-87074123-4	chr11	87074015	87074215	+	894.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025638)	promoter-TSS (NM_025638)	22.0	NM_025638	66569.0	Mm.281887	NM_025638	ENSMUSG00000061666	Gdpd1	2610020H15Rik	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding	4.32756615464479	4.70226427550136	4.42054034148408	4.54766330832209	4.65830704718039	4.63749721582085	4.52691581398983	4.54488156918731	0.180099271427686	0.616228661328223	0.834872661400921
Merged-chr2-86020637-4	chr2	86020507	86020707	+	824.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146578)	promoter-TSS (NM_146578)	-33.0	NM_146578	258571.0	Mm.223099	NM_146578	ENSMUSG00000045392	Olfr1033	MOR199-2	olfactory receptor 1033	protein-coding	3.76948220294186	3.81484636954663	3.65490829902349	3.86470072471988	3.89371125381733	3.8901977667823	4.16985640642184	4.1868294945852	0.699984625709505	0.113045958725414	0.371619021076811
Merged-chr15-96712226-4	chr15	96712100	96712300	+	986.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12472.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	5.28158974689912	5.43212986747509	5.18558293059365	5.43010267943321	5.61678017376504	4.74254247125448	5.65045533451335	5.39742687320611	0.11775850987672	0.724062986758865	0.889978822137985
Merged-chr9-32725250-4	chr9	32725209	32725409	+	849.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038642, intron 1 of 6)	intron (NM_001038642, intron 1 of 6)	29267.0	NM_001038642	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	3.99181582562843	4.18027855852126	3.94572501525667	3.63350747626563	4.21631147915867	3.96904630948119	3.61031616654256	3.35508751856842	-0.313275409684626	0.564492484944679	0.806796423519025
Merged-chr6-39226065-4	chr6	39225963	39226163	+	891.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19290.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	4.36437881899306	4.3735956770388	5.02105441792071	4.87016505817394	4.43566720788222	4.29847116857877	4.04518867910126	4.21926245605712	-0.990059481639667	0.0188116721633134	0.122787346438559
Merged-chr12-102377926-3	chr12	102377796	102377996	+	709.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	61917.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	3.18507825061387	3.14215320900737	3.65919996516127	3.41559862170539	3.35883733905088	3.35972368508523	3.29463209304623	3.24598548614718	-0.180667451027363	0.741184783741926	0.898139463026673
Merged-chr9-65205639-3	chr9	65205510	65205710	+	898.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9080.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	3.53252831289721	3.25585990759022	3.63079831669499	3.70894961928973	3.32718350216417	3.22701174002216	3.23893676120692	3.42519491719571	-0.84456633963754	0.117031886986425	0.378505558213064
Merged-chr2-105904588-4	chr2	105904499	105904699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028260)	promoter-TSS (NM_028260)	-35.0	NM_023876	77766.0	Mm.3608	NM_023876	ENSMUSG00000027167	Elp4	A330107A17Rik|Paxneb	elongator acetyltransferase complex subunit 4	protein-coding	8.2945510582092	8.30173782373865	8.45726535429757	8.89959418131287	8.45053928510727	8.4208453498511	8.53338821373499	8.29046513070218	-0.121239949421886	0.527072445673298	0.784096064657872
Merged-chr19-47730777-4	chr19	47730670	47730870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026377)	promoter-TSS (NM_026377)	-986.0	NM_026377	67788.0	Mm.181610	NM_026377	ENSMUSG00000025066	Sfr1	6330577E15Rik|Meir5	SWI5 dependent recombination repair 1	protein-coding	6.63608136867543	6.54576972128044	6.27362595504984	6.14256300102252	6.44131182564984	7.01953884158675	6.77113045382351	6.40222072489111	0.396457834927047	0.116428484005063	0.377483058349112
Merged-chr5-112324750-4	chr5	112324658	112324858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1611.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	7.96602858694536	7.94467468020686	7.83862626293009	7.77126437154211	7.28679826306123	7.21493188190532	7.09155121482427	7.29820576318329	-0.861929951273784	7.81240830880576e-07	2.79156330829561e-05
Merged-chr11-75460591-4	chr11	75460471	75460671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030711)	promoter-TSS (NR_030711)	-968.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	7.0183235064531	7.5460498884519	7.01954603964934	7.19523514882388	7.31054852091868	7.52724948633781	7.38190917252523	7.3352573051977	0.229753421881549	0.257003681290562	0.568749690044176
Merged-chr18-38441853-3	chr18	38441768	38441968	+	688.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	22961.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	3.13245401808707	3.17993596546787	3.13283399533342	3.26771256418115	3.13070104639699	3.30291126119627	2.99678552065886	3.30081768231269	0.00270840681813682	0.996104702610117	0.998545688713267
Merged-chr7-73606965-4	chr7	73606860	73607060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48565.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	5.87322839085021	5.85845835927851	5.65703499041632	5.61231890275681	5.37834567807808	6.00303120950729	5.88753556246789	5.62645569967807	-0.0246718797260434	0.930336811607045	0.974847913459316
Merged-chr4-98924233-4	chr4	98924111	98924311	+	990.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_146144, exon 1 of 9)	5' UTR (NM_146144, exon 1 of 9)	401.0	NM_001356424	230484.0	Mm.371692	NM_146144	ENSMUSG00000028560	Usp1	-	ubiquitin specific peptidase 1	protein-coding	4.26849524632553	4.29953118368115	4.26912953159556	4.20088240698082	4.75897555620321	4.49203827595294	4.6572403228014	4.64119735419821	0.897985594692981	0.0123644292899755	0.091704461022316
Merged-chr6-125149421-3	chr6	125149327	125149527	+	929.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039669, intron 1 of 9)	intron (NM_001039669, intron 1 of 9)	4203.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	3.93678639819305	3.72749696034987	3.5693687723336	3.66901034301558	3.34015635359697	3.24216656040067	3.26031658437716	3.56734939765142	-1.25499390131227	0.0175423169154469	0.117122650382196
Merged-chr1-64603582-2	chr1	64603482	64603682	+	807.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009952, exon 9 of 9)	3' UTR (NM_009952, exon 9 of 9)	13586.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	3.20485782118228	3.25000357012516	3.01052051924169	3.30930369525525	3.45290771308918	3.2534396946117	3.46127036088585	3.26255429086131	0.569050072144634	0.295273318710062	0.607360011623083
Merged-chr6-135011575-4	chr6	135011474	135011674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026360)	promoter-TSS (NM_026360)	-38.0	NM_026360	67755.0	Mm.166524	NM_026360	ENSMUSG00000030204	Ddx47	4930588A18Rik|C77285	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding	7.42964333474322	7.30619024470906	7.0737681882108	7.26541291145055	7.37540939180969	7.16074434542696	7.4491596656347	7.35809161921538	0.0917927144394149	0.621301681947816	0.837757076551181
Merged-chr11-3535970-2	chr11	3535870	3536070	+	845.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159284, intron 3 of 21)	CpG	3322.0	NM_013870	29856.0	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	3.89935578105414	3.56102502114527	4.19457587086492	4.16238472060739	3.53538609165491	3.42752956894907	3.78553683814905	3.79916984672539	-0.996998317398621	0.0505343063134452	0.233168183715658
Merged-chr5-99476849-4	chr5	99476727	99476927	+	906.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-223900.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.844453812478	4.28729173829123	4.70930364706963	4.79001751470432	4.53328343554866	4.41626404272547	4.57524419555348	4.33376099085329	-0.459703496325789	0.224703146780128	0.533204797899567
Merged-chr1-161166399-1	chr1	161166299	161166499	+	791.666687	f0_balb.idr	intron (NM_028664, intron 6 of 6)	intron (NM_028664, intron 6 of 6)	-7085.0	NM_001195189	100502590.0	Mm.449990	NM_001195189	ENSMUSG00000049160	Tex50	4930469G21Rik	testis expressed 50	protein-coding	3.69661108691961	3.76600489586787	3.69719307626274	3.83377564614646	3.04446910198779	3.16524180566128	3.18532540268032	3.1248024007642	-2.45177374106184	2.91723071930286e-05	0.00070868793641385
Merged-chr5-137601158-4	chr5	137601060	137601260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030037)	promoter-TSS (NM_030037)	-101.0	NM_030037	68929.0	Mm.41355	NM_030037	ENSMUSG00000037221	Mospd3	1190005J19Rik|5133401H10Rik|Gtig2|R124	motile sperm domain containing 3	protein-coding	7.05602645645339	7.5803021644419	6.95403233465937	7.12703257519105	7.53250651173635	7.38668984140781	7.07062862203746	7.2159807167207	0.153458585131	0.490129037091476	0.762136344258112
Merged-chr2-152739553-8	chr2	152739467	152739667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	3316.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	6.06125871585396	6.16569123575744	5.68696239544724	5.64441415799524	5.86603943766297	6.086946337872	6.05128821702144	5.97414595163941	0.149166014296963	0.573307096284574	0.811813432399779
Merged-chr15-25828647-4	chr15	25828528	25828728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14670.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	8.13745543234722	8.17552159200071	8.49050119317058	8.63222767758138	8.09065563336374	8.10990691902346	8.41232768550447	8.27143453657227	-0.198917734769424	0.286933713832076	0.598607969863316
Merged-chr5-30973875-4	chr5	30973771	30973971	+	953.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_053085, exon 3 of 3)	3' UTR (NM_053085, exon 3 of 3)	5194.0	NM_053085	69852.0	Mm.57874	NM_053085	ENSMUSG00000006642	Tcf23	2010002O16Rik|Out|bHLHa24	transcription factor 23	protein-coding	4.67485698812999	4.63535889000333	4.96527550797198	4.74583174824367	5.40494383701296	5.14372953107137	5.75477310849887	5.54736093425833	1.35281616311113	2.20236633866898e-05	0.000554910561487149
Merged-chr11-4988262-3	chr11	4988163	4988363	+	905.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243044, intron 1 of 21)	intron (NM_001243044, intron 1 of 21)	1439.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	3.45133716518952	3.22747459545138	3.28209572060266	3.34783041590075	3.59885657148627	3.51152398769742	3.32881136565998	3.28048214454243	0.389853311730354	0.452149947570868	0.736550660673918
Merged-chr13-21468587-4	chr13	21468479	21468679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025719)	promoter-TSS (NM_025719)	-78.0	NM_025719	66707.0	Mm.116869	NM_025719	ENSMUSG00000059395	Nkapl	4921504I05Rik	NFKB activating protein-like	protein-coding	7.12557908055176	6.90002174504545	7.24689919919176	7.28403937914102	6.94233818419566	6.56449705472155	7.4546832101293	6.98903394402704	-0.167586161719136	0.482463873540922	0.757239458339229
Merged-chr4-103341414-1	chr4	103341314	103341514	+	814.5	f0_balb.idr	intron (NM_025909, intron 7 of 8)	intron (NM_025909, intron 7 of 8)	27568.0	NM_025909	67013.0	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	3.29165135752193	3.47611918571355	3.40035267397588	3.85736920852747	2.86532985357501	2.93275696129511	2.89360905395652	3.1723861880728	-2.37815443674847	0.000291046340237925	0.00495133543302946
Merged-chr18-46598426-4	chr18	46598321	46598521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025698)	promoter-TSS (NM_025698)	717.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	5.23085934762374	5.02301168078198	5.62416633257095	5.07194638009347	5.41139781340289	5.61709519592166	5.17297013648431	5.81970473126374	0.489932483749487	0.12826340054031	0.398518511810149
Merged-chr14-55560007-4	chr14	55559915	55560115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133734)	promoter-TSS (NM_133734)	-14.0	NR_037572	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	6.34215915616216	6.2182132872684	5.72506784653686	6.2245294949179	6.33670166597053	6.57228677399098	6.65551926189953	6.65715988933832	0.596578279499012	0.0145167835813635	0.102478442778724
Merged-chr2-27289206-4	chr2	27289100	27289300	+	969.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 11 of 29)	intron (NR_133905, intron 11 of 29)	-41897.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	4.7903079397103	5.15338357309992	4.62878721766139	4.51330883142337	4.71054595571575	5.20428006029993	4.94445111412314	4.78791447957232	0.266315279560057	0.467729734898989	0.747125948872246
Merged-chr8-35556270-4	chr8	35556172	35556372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_C_Mam|LINE|RTE-X	-31526.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	6.84402758464889	6.46460166228704	6.99699381131956	7.20844884456412	7.27967944100708	7.32139417142437	7.75788548985503	7.45412529159058	0.742627591551981	0.00159012689944539	0.0195717867154804
Merged-chr5-149185030-4	chr5	149184909	149185109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001115151, intron 1 of 8)	CpG	449.0	NM_001359957	231915.0	Mm.29402	NM_001013378	ENSMUSG00000041264	Uspl1	E430026A01Rik	ubiquitin specific peptidase like 1	protein-coding	4.89828047678104	4.87031442373444	5.10144284382371	5.2258725132077	4.97215676662758	4.92041191800617	4.83909452644066	4.9668532288838	-0.234343548378671	0.466974243865401	0.746686728161191
Merged-chr14-76081795-5	chr14	76081724	76081924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41|LTR|ERV1	28991.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	5.17473541070839	5.16780092984752	5.24105069288144	5.00414259833518	5.61878407876195	5.44723427131439	5.49755844249773	5.41553009151628	0.662343900458804	0.0187057623626641	0.122444129042861
Merged-chr6-122946951-4	chr6	122946793	122946993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-5622.0	NM_001204241	73149.0	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	6.68142352046745	6.29835867121527	6.50403733221118	6.39874377233671	6.30168499604294	6.2687842319831	6.24448502185318	6.21325666332906	-0.314320651224925	0.158428007465367	0.445250528810519
Merged-chr11-98036162-4	chr11	98036091	98036291	+	749.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_146028)	TTS (NM_146028)	9267.0	NM_009078	19921.0	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	3.84171621667681	3.55211649663381	3.79036645004571	3.87480557968731	4.02780156814437	4.19829463143063	3.82633749554308	3.73427346411309	0.515689334747379	0.262337320444836	0.574184848071147
Merged-chr1-9545318-4	chr1	9545227	9545427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021511)	promoter-TSS (NM_021511)	-81.0	NM_021511	59014.0	Mm.29061	NM_021511	ENSMUSG00000061024	Rrs1	5730466A07Rik|AA415037|D1Ertd701e|Rrr	ribosome biogenesis regulator 1	protein-coding	9.2666802715985	9.22800521342145	9.15446827538637	9.46405325264021	9.14735433467173	9.10335434046445	9.29060720645429	9.07265465400053	-0.162369369335539	0.275325539487709	0.58708236946753
Merged-chr6-3345448-3	chr6	3345327	3345527	+	922.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54144.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	3.1763345321667	3.38995207615511	3.25181092262439	3.1955179640481	3.75233609783536	4.22792619978356	3.95714131498658	4.09609329573881	2.37722066752296	2.96408485371446e-06	9.34369334820822e-05
Merged-chr4-55655526-4	chr4	55655428	55655628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123053.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	5.93163751382407	5.82354126705717	5.97556554947721	6.39777008792774	5.29378518209568	5.47818284881622	5.96565942199004	5.74083121284252	-0.69588860728831	0.0198104927574747	0.1272563147354
Merged-chr7-98531782-3	chr7	98531664	98531864	+	953.2000119999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	37542.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	4.38341912467765	5.06090630309886	4.38410072414927	3.71159391532704	5.07435610497003	4.77810375946357	4.69483056240261	4.4729752148065	0.627544843616943	0.188369729223174	0.486978133744099
Merged-chr6-87038033-3	chr6	87037918	87038118	+	880.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4828.0	NM_013528	14583.0	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	3.71582780764489	3.33564854702256	3.5113038497574	3.51071286837132	3.57918543890197	3.16280508851125	3.65242552033559	3.80520949436796	0.158974235715093	0.765293269489992	0.908161919263831
Merged-chr3-84675860-3	chr3	84675758	84675958	+	940.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177260, intron 1 of 6)	intron (NM_177260, intron 1 of 6)	9666.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	3.58429197252957	3.20642830408545	3.43322611757568	4.00334755770745	3.1808615238394	3.0238998534115	3.18780905453492	3.19705318938957	-1.65511215689746	0.00670132284635192	0.0589317344799213
Merged-chr17-87256450-3	chr17	87256352	87256552	+	970.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176808, intron 4 of 4)	intron (NM_176808, intron 4 of 4)	9495.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	4.46815182062411	4.38932105335112	4.92418922607869	4.90067067191199	4.21599007055192	4.14750151841289	4.56779694951046	4.23625157528046	-0.915072581066878	0.0240722411551395	0.144811001625477
Merged-chr3-36863663-1	chr3	36863563	36863763	+	1000.0	f0_balb.idr	intron (NM_172679, intron 1 of 85)	intron (NM_172679, intron 1 of 85)	557.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	4.06925674033145	4.08252337457151	3.97950419934675	4.21836720193549	3.94883454038686	3.44096906100444	3.6493283707736	3.92944755777718	-0.922170463427262	0.0542972043007391	0.243349260851462
Merged-chr15-73637729-3	chr15	73637623	73637823	+	844.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12979.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	3.2398703525527	3.13514851651689	3.35630494692261	3.41424277087395	3.38048115051848	3.08120795697779	3.67730585855476	3.29786800910349	0.290754725500824	0.602691218583938	0.827797662188335
Merged-chr4-119976790-5	chr4	119976741	119976941	+	964.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	(TC)n|Simple_repeat|Simple_repeat	162163.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	4.6751538115768	5.06703540807867	4.67592335268613	4.1557452267834	4.72191103788685	4.92281957558854	4.61495105893848	4.21732446737636	-0.0728030856210059	0.864564101404941	0.949198738078594
Merged-chr18-74268883-2	chr18	74268783	74268983	+	645.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357422, intron 1 of 14)	intron (NM_001357422, intron 1 of 14)	708.0	NM_001357422	17190.0	Mm.22522	NM_013594	ENSMUSG00000024561	Mbd1	Cxxc3|PCM1	methyl-CpG binding domain protein 1	protein-coding	3.06622466260595	2.90947196349813	3.28009312615308	3.01596185061229	3.07579268281994	2.98645389116687	2.93504717325363	2.87806931101256	-0.399496093532807	0.502305671030184	0.769590067550421
Merged-chr4-6376126-4	chr4	6376023	6376223	+	924.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	10443.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	4.19417136662072	4.32394715241904	4.5563195647598	5.05879312085731	4.29777102033748	4.37412495779627	4.53504853194771	4.59209908432536	-0.331819552767234	0.439817588205982	0.727425871224001
Merged-chr7-38214773-3	chr7	38214671	38214871	+	811.399963	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	13223.0	NM_024413	72287.0	Mm.333798	NM_024413	ENSMUSG00000074170	Plekhf1	1810013P09Rik|APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology domain containing, family F (with FYVE domain) member 1	protein-coding	4.85318753088361	4.32325578553746	4.63310802357837	4.75703833549732	3.82084731194593	3.97210173389997	3.95147573272666	4.12763637700829	-1.74924635322893	3.98357552596782e-05	0.000929052825566395
Merged-chr7-19157550-3	chr7	19157503	19157703	+	889.166626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080815, intron 13 of 13)	CpG	7765.0	NM_026943	107686.0	Mm.29135	NM_026943	ENSMUSG00000040824	Snrpd2	1810009A06Rik|SMD2	small nuclear ribonucleoprotein D2	protein-coding	4.1285553003471	4.31794337258601	3.89186080425273	3.26035088241427	3.76886193020299	3.90695124259024	4.23239495233076	3.94052530760493	0.0333585323286796	0.950445090374146	0.982264362614525
Merged-chr2-35132235-4	chr2	35132144	35132344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290635)	promoter-TSS (NM_001290635)	10.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	7.51012130864965	7.41206457003083	7.67845106183295	7.46849471847642	7.22194135583584	7.25277935163026	7.42875903358845	7.21443558939407	-0.317125641117315	0.0775327074337413	0.301171812163094
Merged-chr4-35950138-3	chr4	35950033	35950233	+	941.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 7 of 8)	MLT1G1|LTR|ERVL-MaLR	-104929.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	4.33617652535077	3.95960318551563	4.12809285036094	4.59690642907669	3.82541574020174	3.88476543678527	3.74979170981827	4.07937776124698	-1.0741122120804	0.0190917880782821	0.124038178933946
Merged-chr2-173737498-4	chr2	173737418	173737618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019806)	promoter-TSS (NM_019806)	-53.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	8.69194811595783	8.59001695528115	8.7692534802911	8.73685606100268	8.71497667365871	8.77152951209734	8.93266029236153	8.66585249202977	0.0938467616974411	0.528490321073034	0.785101361861029
Merged-chr14-121798503-4	chr14	121798349	121798549	+	974.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134074)	promoter-TSS (NM_134074)	-715.0	NM_134074	105445.0	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	5.62614294124009	5.71124723523068	5.71989659408305	5.26692670116945	5.19354112386774	4.70491341601941	5.44597890047372	5.35611157746084	-0.66833024836342	0.0427024428180958	0.210056473901122
Merged-chr17-12171292-4	chr17	12171117	12171317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026644, intron 2 of 8)	intron (NM_026644, intron 2 of 8)	51933.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	5.34236680838045	5.94434596723066	6.6576949750139	6.17967483951504	6.70601612753673	6.56745539671913	6.79407967832011	6.40373360713501	0.756040263734764	0.0152339641307055	0.1060345206418
Merged-chr9-85361238-2	chr9	85361138	85361338	+	971.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34088.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	2.95899467271363	3.02998581220081	2.90228350931001	2.7478411496712	3.00762308588231	2.51487960523545	2.83228720217272	2.49375941590462	-0.811062608336766	0.270618700318449	0.58243909949623
Merged-chr1-189973182-2	chr1	189973046	189973246	+	747.125	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-50855.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	3.65194869454483	3.55715423569819	3.92694669692287	3.89830583913883	3.29898263765455	3.48228615301025	3.35639249911746	3.48732815587526	-1.23186616828374	0.0163174730328914	0.111357757718905
Merged-chr7-19676896-4	chr7	19676804	19677004	+	930.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277944, intron 1 of 4)	intron (NM_001277944, intron 1 of 4)	1037.0	NM_001277944	11813.0	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	4.91743080719397	4.89220041258703	5.07343757228723	4.76236704696236	4.77950970913708	4.66815546991288	4.55845985606025	4.34134740346517	-0.633580199219179	0.0750963351579492	0.295711553452515
Merged-chr15-12037434-4	chr15	12037319	12037519	+	929.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41412.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	4.93309447139431	4.46288365873604	4.12191494766513	4.51763289283068	4.69774494783005	4.68339475107153	4.48929457599908	4.50703355330131	0.136607562964794	0.727453406509834	0.891505430861744
Merged-chr11-54648768-4	chr11	54648672	54648872	+	907.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 16 of 28)	intron (NM_001252494, intron 16 of 28)	52626.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	4.80366479967225	4.45838475232279	4.31300709473561	4.7375621879439	4.65301028865747	4.86882917726526	4.38969044688055	4.61899470671524	0.0866182778056937	0.817735161392608	0.929981783742416
Merged-chr6-122545507-3	chr6	122545413	122545613	+	681.711121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8296.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	3.65392496658147	3.54689442697424	3.55494589645493	3.48853309992828	3.00584793296206	3.31394414562364	3.25529887893157	3.74431711001048	-0.705583106564023	0.214326301075386	0.52008175481397
Merged-chr4-133751726-4	chr4	133751629	133751829	+	957.7625119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 1 of 19)	intron (NM_001080819, intron 1 of 19)	1882.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	4.7655094556844	5.19626078835341	4.27755716653385	4.63624211844076	4.80378905475445	4.86384289522531	4.70634867996666	4.56341118423619	-0.0447069440196812	0.908560935999732	0.966100563913989
Merged-chr11-69395770-2	chr11	69395668	69395868	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_030083)	promoter-TSS (NM_030083)	-23.0	NM_030083	78304.0	Mm.45683	NM_030083	ENSMUSG00000059278	Naa38	1500034E06Rik|Lsmd1	N(alpha)-acetyltransferase 38, NatC auxiliary subunit	protein-coding	6.24082059495314	6.35880887723018	5.60434896786397	5.43446345405876	6.55495040227482	6.62142387611061	6.07324018315945	5.96965898753182	0.573669916017294	0.0753890073443891	0.296475066569054
Merged-chr1-39916314-4	chr1	39916218	39916418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	ORR1B2-int|LTR|ERVL-MaLR	15405.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	6.44999916174503	5.84284690352267	6.77447380284458	6.95075156798009	6.60524181067028	6.29088685941518	6.83106965983355	6.69992116991544	0.062270609331059	0.831287041761701	0.935322338382222
Merged-chr9-42896699-3	chr9	42896620	42896820	+	751.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175481, intron 1 of 20)	intron (NM_175481, intron 1 of 20)	47651.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	3.56688123482461	3.18724244792787	3.35394447355942	3.50184840381965	3.21228409858098	3.27857745373304	3.50261900938225	3.56526637721861	-0.0665394723378911	0.901162211425233	0.963342914941175
Merged-chr8-11458353-4	chr8	11458233	11458433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-19596.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	8.34629577869962	8.76291019611543	8.5951193896558	7.98342541258025	8.50578336887666	8.7459897636282	8.46741090337982	7.87672624402557	-0.0185375408583407	0.937107519289365	0.977210490892393
Merged-chr9-120708340-1	chr9	120708240	120708440	+	580.0	f0_balb.idr	Intergenic	Intergenic	131009.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	2.69104687818094	2.73854155130109	2.63040950857598	3.19867961540343	2.2245514843465	2.29268023269014	2.34794109876137	2.27385989168807	-4.37579666327679	7.51119145325075e-05	0.00159042612880575
Merged-chr1-166268509-2	chr1	166268409	166268609	+	892.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357432, intron 1 of 8)	intron (NM_001357432, intron 1 of 8)	14370.0	NM_001357428	100039795.0	Mm.101743	NM_001164528	ENSMUSG00000040612	Ildr2	2810478N18Rik|3110063L10Rik|AI852300|D1Ertd471e|Dbsm1|Ll	immunoglobulin-like domain containing receptor 2	protein-coding	3.44953541352396	3.32795051485414	3.44999482964678	3.62768906818537	3.4947187956721	3.10325546490796	3.58988001187369	3.55351543911588	-0.079921387486572	0.881763986337069	0.955451670099647
Merged-chr2-152729752-5	chr2	152729645	152729845	+	841.099976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6506.0	NM_010495	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	2.5613936319811	2.74749522396498	2.71108737149433	2.26723519342055	3.18330309438964	2.95836931057442	2.89716391398408	3.18164611936779	2.39088398232246	0.000965357757609582	0.0130683149161073
Merged-chr7-29297236-4	chr7	29297141	29297341	+	764.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6764.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	4.31032339173773	4.12987652576997	3.91943918106644	4.03423262195063	4.63114614159827	4.1533789178622	4.41075164483225	4.175048988361	0.658593493643732	0.11065830171005	0.367444824473765
Merged-chr6-67060241-3	chr6	67060152	67060352	+	860.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040278, intron 1 of 6)	intron (NR_040278, intron 1 of 6)	-22845.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	3.849277252243	3.99598863527654	3.99866409245786	3.82084893540786	3.94181648594841	4.02272348751543	4.0707147046376	3.84765063774581	0.166166844070793	0.696939566148748	0.877542214380006
Merged-chr7-24461665-4	chr7	24461587	24461787	+	916.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011113)	promoter-TSS (NM_011113)	-796.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	2.72041334929129	2.9527052096372	2.91096398420504	2.60813298714722	2.72923081987896	2.89486532982565	2.89976788745792	2.8491259554569	0.202706813507486	0.747805072905639	0.90068822490119
Merged-chr10-117709501-3	chr10	117709423	117709623	+	673.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001288586, intron 2 of 10)	intron (NM_001288586, intron 2 of 10)	1235.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	3.27992867940206	3.29024002782469	3.38411684482114	2.86388707981593	3.07327133456346	3.15493096361505	3.09599851846885	3.04246149150373	-0.468488134562824	0.430871890336611	0.721309079893587
Merged-chr2-117959786-2	chr2	117959686	117959886	+	649.666687	f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	137858.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	2.60948069713803	2.60279246544603	2.5332385589567	2.34542315979391	3.27206019264675	3.05233612130116	2.80627260791841	2.99431558698905	2.68285041936975	7.3612815401526e-05	0.00156642349401053
Merged-chr6-72164511-4	chr6	72164368	72164568	+	963.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41271.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	5.07455857954166	4.54753325478019	5.04344674586588	5.69747345314471	4.61946037481428	4.66865297921741	4.80950582622412	4.90346581590489	-0.835064649769156	0.0369439518532293	0.191510709268153
Merged-chr11-70489415-1	chr11	70489315	70489515	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-15859.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	5.17313897338981	5.10611470141921	4.64901829612328	4.5407852246594	4.96153939243159	5.25595866580879	4.7501143834457	4.60217812458338	0.0567108045795987	0.881444091211091	0.955384724180766
Merged-chr9-85368551-4	chr9	85368452	85368652	+	845.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41402.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	4.30977151966324	4.13701189865591	4.26304763866807	4.91629068564424	4.70406066360587	4.289733077744	4.24479242029728	4.63407815384292	0.0513515436960314	0.908015460676118	0.965948774106492
Merged-chr10-80151304-4	chr10	80151208	80151408	+	948.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347117, intron 2 of 7)	CT-rich|Low_complexity|Low_complexity	1626.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	4.42107076198306	4.67905649518852	4.96695656099931	4.19540804957962	4.83366279672209	4.85891842941966	4.66188215640088	5.11247567859872	0.61592959933609	0.110375046126039	0.366897931546507
Merged-chr5-114647805-3	chr5	114647707	114647907	+	912.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 1 of 15)	intron (NM_022017, intron 1 of 15)	10614.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	3.81643535646353	3.83937182934145	3.86661596708282	3.83480681544479	3.70614294369822	3.88456192286262	3.64188318948998	3.95799587979913	-0.115931495150167	0.795635915689295	0.920897975671128
Merged-chr15-64313663-2	chr15	64313563	64313763	+	771.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276462)	promoter-TSS (NM_001276462)	-990.0	NM_001276463	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	2.63857420084513	2.43614463164517	2.5221027801639	2.3776053398436	2.49011367485244	2.27234977261243	2.31768359149702	2.32306738024987	-0.773669603392905	0.296686600686487	0.608618812331069
Merged-chr8-39639879-4	chr8	39639824	39640024	+	924.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	2754.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	4.23466272882534	4.5579445953049	4.45554615223456	4.52652532462106	4.5567248307241	4.31249536553138	4.39443436672312	4.08038064299242	-0.230145095418869	0.55825404972047	0.8030434967081
Merged-chr12-80407919-2	chr12	80407819	80408019	+	871.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_177267, intron 1 of 8)	B3A|SINE|B2	-16182.0	NR_028544	100217447.0	Mm.453532	NR_028544	ENSMUSG00000112285	Scarna3b	MBI-100	small Cajal body-specific RNA 3B	ncRNA	3.56765839935578	3.52546909421197	3.33153163105073	3.23531001281427	3.36927751199228	3.63096414689126	3.65626203167486	3.97801028518525	0.834375705788789	0.107753315868945	0.36205500709194
Merged-chr5-113114350-3	chr5	113114260	113114460	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172884, intron 1 of 7)	intron (NM_172884, intron 1 of 7)	24225.0	NM_001347397	243219.0	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	4.71855389991775	4.52000312635313	4.41292107088206	4.80608781870742	3.4724900839493	3.63266282550447	3.56874794755005	3.77816896543758	-3.00382787025674	2.80900719498315e-09	1.66065052434972e-07
Merged-chr4-40854134-4	chr4	40854030	40854230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_022305, exon 1 of 6)	5' UTR (NM_022305, exon 1 of 6)	407.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	8.42980825128332	8.98608311020173	8.54796869610721	8.38643569012165	8.62317348905359	8.94351711958627	8.75777148138017	8.72685130119345	0.195706892133849	0.296829610705399	0.608789363503805
Merged-chr4-149790047-4	chr4	149789949	149790149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15782.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	6.15093227061269	5.59759646660996	5.60444659242929	5.65660422560388	5.69170942803485	5.63745567550846	5.82298839064879	5.75517930494159	-0.0597986887004241	0.827729889564038	0.933903677361406
Merged-chr17-35980791-3	chr17	35980660	35980860	+	966.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282013)	promoter-TSS (NM_001282013)	805.0	NM_008136	14670.0	Mm.335754	NM_008136	ENSMUSG00000024429	Gnl1	Gna-rs1|Gnal1	guanine nucleotide binding protein-like 1	protein-coding	4.28085638839841	3.98671982356657	3.87888965909634	4.0242208311298	3.94308849267709	4.05242409960008	3.75503595159135	3.97768356642537	-0.307234325655492	0.480215432297167	0.755770983162271
Merged-chr2-129308323-7	chr2	129308238	129308438	+	834.780945	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040371)	TTS (NR_040371)	1634.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	3.14828537336491	3.72637869868723	3.28610101256943	3.02982236853863	3.54293537921963	3.94144041988749	3.61471077093379	3.52343404358222	1.11542183667403	0.0474757204843101	0.224536498893868
Merged-chr4-119707998-3	chr4	119707889	119708089	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49044.0	NM_008191	14916.0	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	3.28336758859959	3.34623873866907	3.22688688525447	3.47829347070015	2.86575798910651	3.0063112583241	3.21484606947076	3.3885698631255	-0.817333893688454	0.167983051382894	0.459915036621355
Merged-chr11-47156862-2	chr11	47156762	47156962	+	674.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 3 of 7)	B4A|SINE|B4	222440.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	3.1529367131794	3.08667669929967	3.03604993471527	2.83175442840379	3.04065553017256	3.01565179774295	3.24684739656645	3.03453682370969	0.267380286737358	0.644965871403658	0.850573912153132
Merged-chr10-118970776-4	chr10	118970647	118970847	+	861.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43604.0	NR_110482	216377.0	Mm.208936	NR_110482	ENSMUSG00000112854	Gm38403	C230029M16	predicted gene, 38403	ncRNA	4.06940098047694	4.96273934960528	4.31298317286651	3.73587928399058	4.34980500587409	4.35036262614831	4.24860378224688	4.31022476483479	-0.0939926583316448	0.846811142804735	0.942018787399771
Merged-chr2-36244902-4	chr2	36244800	36245000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 8 of 10)	intron (NM_008969, intron 8 of 10)	14474.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	6.38432326044663	5.89506932110527	6.81197146064497	7.0693453515897	6.3486949597445	5.95205681665388	6.45647846795563	6.80710852296543	-0.285849964195417	0.37137880599902	0.675446164536008
Merged-chr3-9878977-4	chr3	9878885	9879085	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45306.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.70966485171574	4.86825561314782	4.57933944164904	4.82596384538822	5.20977601517634	4.96658049755863	5.32324428103377	4.82635922323736	0.675540583646377	0.0430245018098451	0.211034090773203
Merged-chr17-73937210-4	chr17	73937099	73937299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 4 of 35)	intron (NM_011723, intron 4 of 35)	12997.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	7.20170488085195	7.05530575037233	7.44310325725672	7.63143180589628	7.00545320606298	6.65810410825334	7.09905941338311	7.30358143657414	-0.438240493203664	0.0556096067761177	0.246839557620234
Merged-chr4-59879608-1	chr4	59879508	59879708	+	715.5	f0_balb.idr	intron (NM_172468, intron 4 of 8)	intron (NM_172468, intron 4 of 8)	35448.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	3.7582306463853	3.4242792391423	3.75878370428714	4.19711413816769	3.48677068346923	3.54049053835102	3.588733974638	3.54436803603194	-0.905855062858214	0.0846595528854152	0.316617519128201
Merged-chr19-43571182-4	chr19	43571102	43571302	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41123.0	NM_008699	18089.0	Mm.56994	NM_008699	ENSMUSG00000044220	Nkx2-3	Nkx-2.3|Nkx2.3|tinman	NK2 homeobox 3	protein-coding	5.44058661190523	5.38801120626489	5.3203948551325	5.42202214148905	5.87141302142591	5.18017623375947	5.88642989414957	5.43772340279151	0.420639999578409	0.162141525000383	0.45122118081163
Merged-chr11-117799412-4	chr11	117799314	117799514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029964, intron 2 of 5)	intron (NM_029964, intron 2 of 5)	1754.0	NM_029964	77727.0	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	Il-40	RIKEN cDNA 6030468B19 gene	protein-coding	6.83615543947228	7.0899817356363	6.58598544727673	5.99152407601521	6.7691220342975	7.10370424678459	6.58441728367284	6.73504919714268	0.186633059268113	0.511790705438489	0.775640902406129
Merged-chr15-86272907-4	chr15	86272799	86272999	+	981.408325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 4 of 12)	L1M4c|LINE|L1	-4776.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	5.32165510103196	4.55734310762801	5.20313187647954	5.58035053822228	5.06080792040937	5.46641961853654	5.1136637032551	5.10204881148107	-0.0703302059989546	0.848511302347654	0.942781137137219
Merged-chr6-128888944-4	chr6	128888842	128889042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289706, intron 2 of 6)	intron (NM_001289706, intron 2 of 6)	1355.0	NM_001289707	93675.0	Mm.391513	NM_020257	ENSMUSG00000030365	Clec2i	Clr-g|Clrg|Dcl1|LCL-1|OCILrP2	C-type lectin domain family 2, member i	protein-coding	7.80470871913027	7.85532535402496	7.58904123049122	7.7187312831506	7.65579726911377	7.44894028463588	7.59475204963941	7.10968094879022	-0.356786143236802	0.0653893920628114	0.272263909777061
Merged-chr5-114131181-4	chr5	114131098	114131298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011677)	promoter-TSS (NM_011677)	42.0	NM_011677	22256.0	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	5.78073430206911	6.0834403532232	5.85470359842468	5.77714566578257	5.85706265484522	5.90685400766147	6.07943998637468	5.98508889849491	0.128722286964511	0.602648326630064	0.827786670034761
Merged-chr9-101073824-4	chr9	101073748	101073948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001100451)	promoter-TSS (NM_001100451)	-914.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	8.19388842595395	8.49450781539302	8.51963083525275	8.17609085839387	8.56550014612185	8.49635262681799	8.60667789777798	8.17742266859004	0.153735738606195	0.39066531603366	0.690621064225112
Merged-chr2-167680160-4	chr2	167680071	167680271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8744.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	5.8451772122208	6.02398554202894	5.40456175844358	5.89846867237646	5.88224050423729	6.04372199244065	5.76922745234441	5.81852219339294	0.0935631057334672	0.727087249406846	0.89133085313418
Merged-chr17-81432925-4	chr17	81432829	81433029	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 5 of 8)	intron (NR_104580, intron 5 of 8)	305458.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	4.29277348225088	4.99312760154453	5.07564349054253	4.92799380020721	4.74509481122975	4.67025787645425	4.82903611449923	4.4892213440395	-0.351084961782767	0.353554732505411	0.660343015087972
Merged-chr7-16043658-4	chr7	16043549	16043749	+	970.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28196.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	5.44154778155112	5.00194822849743	5.4945190994935	5.28359578895259	5.15989556881783	5.18008177590761	5.51624527099842	4.96078068605522	-0.171557688127818	0.588382809792644	0.819675135431917
Merged-chr5-25010558-4	chr5	25010450	25010650	+	988.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 3 of 15)	intron (NM_145401, intron 3 of 15)	-14797.0	NM_001310480	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	5.4147443611625	5.37204105579501	4.65959670579634	5.33213358267323	5.04223828073038	5.3841650272453	5.21488515071796	5.6123136623269	0.162849998674735	0.635470930448046	0.845728109373985
Merged-chr16-4678316-4	chr16	4678227	4678427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 1 of 27)	intron (NM_030205, intron 1 of 27)	1393.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	6.30633938355044	6.47280879428216	6.38170442466734	6.66901929688737	6.43483666129354	6.5028664083061	6.51671789713602	6.34059296702452	-0.047545189372382	0.82973797895658	0.934618333601978
Merged-chr2-71367733-4	chr2	71367627	71367827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172436)	promoter-TSS (NM_172436)	-173.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	7.14392769078356	7.12520372555048	7.67338455962414	7.0132462002538	6.92104801023142	7.17592530229682	7.09771334673737	7.20749379179047	-0.212680608666247	0.336781857665114	0.646671794355953
Merged-chr3-41038689-4	chr3	41038568	41038768	+	970.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44378.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	4.59388054452615	4.00612639603361	4.16837447642234	4.23030376273985	4.54471159086949	4.1332980239047	4.60784698075478	4.62719310734359	0.545321837256358	0.181513778500937	0.478216280116896
Merged-chr12-40460003-4	chr12	40459904	40460104	+	930.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	13951.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.15297807847024	4.1608564555928	4.10252961704227	4.51331464592748	4.43375527644508	4.55289795504935	4.44294507923949	4.33714597708843	0.415701148624564	0.299118097474	0.611439276876077
Merged-chr10-68104763-3	chr10	68104653	68104853	+	897.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 8 of 9)	intron (NM_023598, intron 8 of 9)	125183.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	3.84964278541023	3.56652087429855	3.71152859513548	3.60088114960198	3.53559778381732	3.35846950866914	3.64650873155986	3.4974131750106	-0.531243152376952	0.28167566391263	0.593827328188759
Merged-chr1-43827134-1	chr1	43827034	43827234	+	561.0	f0_balb.idr	intron (NM_026430, intron 1 of 14)	intron (NM_026430, intron 1 of 14)	574.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	4.11018459455267	3.89962853626647	4.38607994145135	3.98200991150381	3.85514413611102	3.93680943661432	3.56187991643342	4.06351163999085	-0.643232414723292	0.16651000035403	0.457854257714575
Merged-chr3-105928335-4	chr3	105928204	105928404	+	766.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033780, intron 2 of 5)	intron (NM_001033780, intron 2 of 5)	4360.0	NM_001033780	433638.0	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	3.05010994628631	3.35808278488776	3.53878747264872	3.46483327809986	3.55816481788319	3.48977444863612	3.57333500900876	3.37437076182484	0.442855291623761	0.405834179524782	0.702456276834042
Merged-chr5-141058159-1	chr5	141058059	141058259	+	619.0	f0_balb.idr	Intergenic	Intergenic	-57563.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	3.2828879309016	3.01430557404529	3.28334570963776	3.15101612854572	3.20492216206512	3.09512045384802	3.10315646435965	3.11252718704757	-0.197442941615441	0.722934515905194	0.889303283749819
Merged-chr3-98844090-3	chr3	98843973	98844173	+	820.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15721.0	NM_001304800	15492.0	Mm.140811	NM_008293	ENSMUSG00000027871	Hsd3b1	3-beta-HSD I|D3Ertd383e	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	protein-coding	3.97130965208999	3.7693072428455	4.96908344415638	4.45584325930378	3.97281657369514	4.20332906033677	3.78518244551341	3.9695639781351	-0.958407125211185	0.0634958719416918	0.267493647546028
Merged-chr3-89089990-4	chr3	89089897	89090097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083808)	promoter-TSS (NM_001083808)	34.0	NM_001083808	72296.0	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	6.86112914594939	6.62607168277679	6.83537340593628	6.75109600594791	6.68639489566657	7.09043091601366	6.77323209077518	6.73137968992875	0.0777524903432145	0.708488125376413	0.882900028609472
Merged-chr8-84969553-4	chr8	84969462	84969662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011563)	promoter-TSS (NM_011563)	-60.0	NM_001317385	21672.0	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	5.37040864493363	5.80649194585825	5.52039109696744	5.47800540656421	5.42076768791883	5.75023792519088	5.6984717812512	5.81550286580198	0.197930546654174	0.479056390083905	0.754876095045917
Merged-chr6-127268222-4	chr6	127268093	127268293	+	697.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39774.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	3.64554161605874	3.73780958668089	3.52988268687892	3.47856398379027	3.80681065595468	4.01993553258324	3.68551718345063	3.89543309228499	0.782335926236853	0.0897941975189876	0.327247001444064
Merged-chr7-119896029-7	chr7	119895928	119896128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173408)	promoter-TSS (NM_173408)	167.0	NM_001285960	73919.0	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	6.54400631356672	6.37139015963033	6.96816817010437	6.4737060199072	6.70368722335562	6.96417399453965	6.711820641199	6.75558875644036	0.264076066621705	0.24522381912232	0.556284046546467
Merged-chr7-45340813-4	chr7	45340707	45340907	+	929.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029741, intron 27 of 29)	intron (NM_029741, intron 27 of 29)	5538.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	4.34613157291992	4.12685613691795	4.30415065517517	4.25367403604128	4.38154459190087	4.38685786452967	4.36791850467048	4.06436703095802	0.127437697521885	0.743477224679816	0.89894073126818
Merged-chr13-55205255-4	chr13	55205155	55205355	+	951.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-4527.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	4.41394335860254	4.96282479424836	4.41459782187958	4.8720795207224	4.90060824049408	4.77660263553821	4.70095774503546	5.25491362235481	0.450097987373897	0.236328188737891	0.54635110416624
Merged-chr3-96239133-4	chr3	96239020	96239220	+	927.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178216)	promoter-TSS (NM_178216)	7.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	6.01921999453436	6.42560534951378	5.64505370435772	5.12671604087243	5.40946480304762	5.65887733893563	5.45285145437412	4.94400986417297	-0.835919952205782	0.0273014520948071	0.157431724927536
Merged-chr13-119835752-4	chr13	119835657	119835857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5540.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	7.10971741977635	7.05102029505383	6.5159263071624	6.51714509076304	7.0983760841262	7.32043538149358	6.89396861011461	6.9241971554495	0.346315399448637	0.14746346548791	0.428577926992117
Merged-chr9-102354762-2	chr9	102354662	102354862	+	710.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168296)	promoter-TSS (NM_001168296)	-69.0	NM_001168296	270190.0	Mm.22897	NM_173447	ENSMUSG00000032537	Ephb1	9330129L11|AW488255|C130099E04Rik|Cek6|Elk|Elkh|Hek6|Net	Eph receptor B1	protein-coding	3.07161978552711	2.91645368525	3.36531571428046	2.79090531720252	3.28838114110769	3.311793276292	3.49744145798445	3.25389748111291	1.14559039853974	0.0503647675899375	0.232872874139775
Merged-chr13-49192619-7	chr13	49192524	49192724	+	878.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	5077.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	3.79078990154182	3.6404513463802	3.69397662008874	3.61304491697016	3.70179045021206	3.58852007280788	3.57472022729784	3.53059356315151	-0.236060623737818	0.617318767566099	0.835468348897191
Merged-chr3-96576381-4	chr3	96576280	96576480	+	946.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9579.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	4.94747791408942	5.45906871140479	4.39990901443176	4.20302814450104	4.88778409331551	5.22057615363127	4.92390279121381	4.87417383920966	0.259791288560567	0.552305800908151	0.799556105654923
Merged-chr2-120362877-4	chr2	120362763	120362963	+	925.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173734, intron 17 of 19)	intron (NM_173734, intron 17 of 19)	-9726.0	NM_147153	269338.0	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	4.26258610818726	3.60590335690299	3.89930858154926	4.30561716446094	4.21066307417709	3.78938690036334	4.0762219775961	3.99811459735153	-0.0665633709331319	0.890038505375575	0.958833556939824
Merged-chr11-84879876-4	chr11	84879819	84880019	+	892.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025414)	promoter-TSS (NM_025414)	276.0	NM_027388	70325.0	Mm.390414	NM_027388	ENSMUSG00000045140	Pigw	2610044A17Rik|Gwt1	phosphatidylinositol glycan anchor biosynthesis, class W	protein-coding	4.06505199538429	4.43341178919049	4.38677375975709	4.25270501399807	4.25330961781196	4.24159543126436	4.24006694221711	4.34277781457657	-0.0530802561039694	0.89163148925793	0.959441830142612
Merged-chr9-107985869-4	chr9	107985789	107985989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026597)	promoter-TSS (NM_026597)	27.0	NM_026597	68176.0	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	5.59303380660653	5.42604091713166	5.71699908940082	5.49102951019029	5.4054409718824	5.63255217869381	5.45873183562635	5.51013627224821	-0.0946591672682593	0.726802178465223	0.891273682846738
Merged-chr10-120166030-4	chr10	120165931	120166131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 7 of 11)	intron (NM_001359184, intron 7 of 11)	35566.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	5.53560770182991	5.71326407207336	5.37059464044663	4.86204537564294	6.6334528176855	6.2660153305215	6.84368809008143	6.37411305085589	1.83529628084063	5.90424539204998e-10	3.96096402225001e-08
Merged-chr15-59051272-4	chr15	59051180	59051380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	L1M2|LINE|L1	30746.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	7.10761901326566	7.16607810421515	7.37839320813828	7.27858001001007	6.58916686182006	6.61722879109497	7.0614670578286	7.12677131931089	-0.512221526385711	0.0188428850478188	0.122900917696206
Merged-chr10-68738428-2	chr10	68738328	68738528	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	MTE2a|LTR|ERVL-MaLR	14682.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	3.16747645613539	2.89725093448302	3.31952674630671	2.94840281776364	2.97007468839348	2.75206885671188	3.04407456353843	2.93126647384184	-0.663273592901899	0.286522242061565	0.598180520552007
Merged-chr2-68438095-4	chr2	68438015	68438215	+	992.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 1 of 17)	Lx8b|LINE|L1	33866.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	5.53073432363312	5.12701593741108	5.25986353128211	5.3315805737825	5.08449178582269	5.23924612571366	5.2033693826312	5.05987025917943	-0.320995879586259	0.281266176419314	0.593350676368524
Merged-chr7-99711384-1	chr7	99711284	99711484	+	641.0	f0_balb.idr	promoter-TSS (NM_175316)	promoter-TSS (NM_175316)	-44.0	NM_175316	101488.0	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	2.85892334389813	2.75121341274824	2.96792055963109	2.87860808102365	2.32914357928222	2.4900710314446	2.45932124957267	2.73919405826946	-1.99983967052255	0.00877514084982589	0.0718350489418927
Merged-chr2-152344134-6	chr2	152344025	152344225	+	958.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175093)	promoter-TSS (NM_175093)	-65.0	NM_175093	228775.0	Mm.276018	NM_144554	ENSMUSG00000032715	Trib3	Ifld2|Nipk|SINK|SKIP3|TRB-3|Trb3	tribbles pseudokinase 3	protein-coding	5.02519495020765	4.94246877013929	4.77233511857412	4.94543246559408	5.10192658427067	4.98692630697574	5.15462030133112	4.68663963944884	0.145375652881597	0.654906318714656	0.855755637835083
Merged-chr1-171112014-3	chr1	171111946	171112146	+	876.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9615.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	2.9725308032321	2.87603184707216	3.14402863931385	3.02191068734549	2.84501560129898	3.01822405861077	3.07726962219699	2.84355274021703	-0.256790559510843	0.666485307392195	0.862000851460164
Merged-chr9-66878325-3	chr9	66878196	66878396	+	805.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	B2_Mm1t|SINE|B2	41409.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	3.31944477338852	3.09511729939657	3.47946336637874	3.03482289606274	3.347528246806	3.59688515914336	2.99288110397658	3.31805854152062	0.338061432874339	0.559985711131948	0.804174263629324
Merged-chr18-56925618-4	chr18	56925533	56925733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177115)	promoter-TSS (NM_177115)	-85.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	9.10356844084664	9.17915861465198	9.08467304516783	9.41046432333921	9.2034352907312	9.27952955569497	9.44790077819011	9.14218372691138	0.0816404866968968	0.601892261201516	0.827338880714959
Merged-chr13-9231624-4	chr13	9231533	9231733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-44892.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	4.53234176853761	4.90651285793043	5.78521628756625	5.22521407168271	5.32338149920826	5.35384909475772	5.89320731197678	5.57623524940012	0.635985780456044	0.104194738532776	0.354855078585962
Merged-chr18-56470979-4	chr18	56470855	56471055	+	908.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360917, intron 2 of 13)	intron (NM_001360917, intron 2 of 13)	38823.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	5.02237440724519	5.09861329936548	4.79837361844078	4.84171937407463	4.30094157614559	4.51873908629696	4.41482551611693	4.23119293653902	-1.27438859012521	0.000474261464414316	0.00740457485754476
Merged-chr10-99380285-3	chr10	99380182	99380382	+	701.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117051.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	3.77988907420341	3.90589125657085	4.30374362696945	3.51871437275179	3.62384091304527	3.34838575473153	3.60693310899632	3.43878573425645	-1.19463049475337	0.0274046412547977	0.157816177426445
Merged-chr8-125776995-4	chr8	125776927	125777127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 25 of 33)	intron (NM_175561, intron 25 of 33)	42824.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	7.03628143550534	6.94761945153249	7.43014390183629	7.36169862662418	7.02212335705058	6.68237720352756	7.40230319454434	7.1399430573838	-0.171623444466439	0.457048855611954	0.740328517046477
Merged-chr10-67966357-4	chr10	67966250	67966450	+	921.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152797, intron 2 of 2)	intron (NR_152797, intron 2 of 2)	7358.0	NR_152797	75067.0	Mm.416933	NR_152797	ENSMUSG00000112899	4930521O17Rik	-	RIKEN cDNA 4930521O17 gene	ncRNA	4.70657620498259	4.57693730447632	4.70733087691787	4.66269359983801	5.12950389942096	4.84240472136566	5.06270384201409	4.95909309353678	0.705922745924467	0.0287720337769742	0.162971814786173
Merged-chr8-53627143-4	chr8	53627011	53627211	+	803.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146208, intron 1 of 9)	RLTR25B|LTR|ERVK	11954.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	3.99406911665027	3.51089115941883	3.69612512061231	3.43968389125245	3.99474569742915	4.07314745635871	3.93179103538253	3.74876365231861	0.814062924595723	0.0870414180809545	0.321728259728112
Merged-chr3-69060269-4	chr3	69060174	69060374	+	908.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15532.0	NM_025863	66949.0	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	4.85222033281415	5.23601274204714	4.8184501427784	4.79288330786848	4.46744789608574	4.33084734953411	4.48148448237931	4.54290616442628	-1.02740054419233	0.00483224957503408	0.0463577922618005
Merged-chr15-63616964-4	chr15	63616858	63617058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137350.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	6.463831366581	6.1409683736946	7.01099361293303	6.95925552949327	6.46197920814898	5.96271211872281	6.6064027871577	6.33455872179917	-0.483259350735214	0.089095130656211	0.325649702422637
Merged-chr19-59020997-4	chr19	59020873	59021073	+	888.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 9 of 16)	intron (NM_001114312, intron 9 of 16)	55096.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	3.95796461154967	3.5010229625506	4.05628445946089	4.20491404727058	4.21882271193057	4.2274075118923	3.89092319422401	4.18751476661319	0.449962639298829	0.342151749044994	0.651124758582832
Merged-chr9-55395870-4	chr9	55395764	55395964	+	961.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172923, intron 3 of 10)	intron (NM_172923, intron 3 of 10)	68951.0	NM_001357568	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	4.93067095116786	4.83344789750459	5.06304966288452	5.20740741955118	4.79708868693952	4.83932342329539	4.87293951351908	4.65941154969914	-0.473324519455921	0.152157278023824	0.436094338331298
Merged-chr9-103233189-4	chr9	103233088	103233288	+	772.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2902.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	3.73279007731342	3.54661716383889	3.4209084823385	3.72075989648152	4.15364575046207	4.06311218328139	4.25166470507414	3.93714338369956	1.36322117899033	0.0031540596740708	0.0331957435369932
Merged-chr16-4790137-4	chr16	4790028	4790228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358080)	promoter-TSS (NM_001358080)	164.0	NM_001358082	66626.0	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	7.55974331729839	7.68793637235269	7.82923692161383	7.31473707404726	7.31957111177992	7.5476233314894	7.36443621728739	7.54695880005749	-0.209164348080371	0.285630694181079	0.597370487780308
Merged-chr10-79926482-4	chr10	79926331	79926531	+	799.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007880)	promoter-TSS (NM_007880)	-612.0	NM_001288626	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	3.10884191964025	3.34940840289568	3.48013171498613	3.07503238744481	3.72112563362157	3.54118972454269	3.46591812286814	3.58147776742861	1.14346470456183	0.0289180697671141	0.163402979507105
Merged-chr16-21211053-1	chr16	21210953	21211153	+	622.0	f0_balb.idr	intron (NM_010143, intron 1 of 15)	intron (NM_010143, intron 1 of 15)	6258.0	NM_010143	13845.0	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	3.35661207685392	3.13681766530237	3.3570617834358	3.31865704826536	3.38105321336857	3.35303561104984	3.44868971018284	3.23984865231288	0.228283097834368	0.661200916468777	0.859248535470598
Merged-chr6-52955515-4	chr6	52955417	52955617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-45897.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	5.31484469894589	5.51080210017887	5.31574519428131	5.90932653080868	5.75276853638037	5.49445118561651	5.86335975264557	5.86810939994855	0.318233679247773	0.291499831035658	0.603825699545213
Merged-chr15-57693960-4	chr15	57693893	57694093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199449)	promoter-TSS (NM_199449)	-674.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	6.67378607754309	7.48552186425814	6.56133992179234	6.35843274334407	6.96757183426667	6.83681002624827	6.7303126596036	6.73077469994167	-0.0349926039104288	0.902244677588143	0.963727511420608
Merged-chr16-94601805-4	chr16	94601688	94601888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-9631.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	7.75869989881925	7.86143064550485	7.46333705167571	7.69006796749363	7.88562312419971	8.14360068013758	8.18941518993771	7.80952003702853	0.403911399840596	0.0283304299758461	0.161296726543813
Merged-chr14-99045584-2	chr14	99045484	99045684	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175265)	promoter-TSS (NM_175265)	552.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	4.17177425823813	4.44085221795623	4.61749149576374	4.52101741485413	4.36694877803819	3.83670658576549	4.00249144897765	4.35011353042524	-0.683645174716397	0.112543682951103	0.370953776743532
Merged-chr5-139460621-4	chr5	139460519	139460719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028469)	promoter-TSS (NM_028469)	-85.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	7.36220795670429	7.53979240319713	6.57952051389077	7.04054342353447	7.62762110636666	7.54044531379122	7.16944886984775	7.2660730911436	0.320056780696531	0.198512969134813	0.500051478573341
Merged-chr6-113697042-4	chr6	113696933	113697133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033463)	promoter-TSS (NM_001033463)	-17.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	8.86991138719263	8.95178403178257	8.9728265354204	8.91668451371676	8.93830327130043	9.33559419765499	9.2212434881798	8.80554547098382	0.201193902873361	0.22911531443594	0.538010661957944
Merged-chr10-79975291-4	chr10	79975183	79975383	+	944.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130455, intron 3 of 8)	intron (NM_130455, intron 3 of 8)	4559.0	NM_130455	170483.0	Mm.391566	NM_130455	ENSMUSG00000035745	Grin3b	GluN3B|NR3B	glutamate receptor, ionotropic, NMDA3B	protein-coding	4.69147905124351	4.90977951979391	5.15150285823007	4.15620993329461	4.84081358777642	4.74528313275586	4.74611171048131	4.60767763617539	-0.0538270406666928	0.894625328565265	0.960655379918931
Merged-chr5-74348548-5	chr5	74348461	74348661	+	913.2666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	153235.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	3.05326290234501	2.96904963644577	3.0535719364158	2.88463063661471	4.1134536213165	4.46192309265601	4.12109855800801	4.1785567970169	4.75805193383779	1.3774394627328e-05	0.00036789779931654
Merged-chr4-106981606-4	chr4	106981503	106981703	+	750.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355532, intron 1 of 14)	intron (NM_001355532, intron 1 of 14)	58418.0	NM_001355532	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	3.90801281118014	3.86472149775529	3.71264585689962	3.59989049869769	3.91142936775637	3.46399364563482	3.93531953315591	3.54154576763532	-0.0940961379124693	0.84851367391055	0.942781137137219
Merged-chr2-105716765-3	chr2	105716677	105716877	+	842.1889039999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023876, intron 9 of 9)	intron (NM_023876, intron 9 of 9)	34314.0	NM_001310145	18508.0	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	3.57692019978544	3.93835963163208	3.72180451225013	2.93498911294127	3.74263528155842	3.20627987419789	3.15169787195406	2.93617222218096	-0.998386411265626	0.154517606237159	0.439801241388062
Merged-chr7-114020853-4	chr7	114020750	114020950	+	922.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145584, intron 7 of 15)	intron (NM_145584, intron 7 of 15)	96931.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	3.91600045569688	4.62612731639699	4.4666900954918	4.60192472346965	4.22876717357388	4.5554500608984	4.17734649133346	4.68733905368138	-0.0340517098147297	0.937306793871188	0.977288591573634
Merged-chr15-95772493-4	chr15	95772393	95772593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18350.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	6.08657745624319	5.83640136299065	6.12691693781761	6.08267705095504	5.78003012305087	5.69822144194983	5.95322279742114	6.08329855714886	-0.244472684130002	0.327585740847172	0.639038189206338
Merged-chr13-6062451-4	chr13	6062379	6062579	+	912.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	200990.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	4.27887677111611	4.5565014088685	4.56988592866452	4.31450808014709	4.33505776872564	4.40738020066989	4.54817068568314	4.07640702450585	-0.184508252288068	0.637397615183174	0.84675858251443
Merged-chr5-110653469-4	chr5	110653367	110653567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027156)	promoter-TSS (NM_027156)	16.0	NM_027156	69663.0	Mm.5267	NM_027156	ENSMUSG00000029504	Ddx51	2310061O04Rik|AA537002|C81583|R75505	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	protein-coding	6.81634809236345	6.94060868006545	6.28917354230622	6.95307995402467	7.13904092185273	6.86255925066575	6.76894845810908	6.84023982402142	0.181836725553522	0.437450734921056	0.725709827551994
Merged-chr5-8736591-1	chr5	8736491	8736691	+	744.0	f0_balb.idr	intron (NM_011076, intron 25 of 29)	intron (NM_011076, intron 25 of 29)	-61556.0	NM_011075	18669.0	Mm.146649	NM_011075	ENSMUSG00000028970	Abcb1b	Abcb1|Mdr1|Mdr1b|Pgy-1|Pgy1|mdr	ATP-binding cassette, sub-family B (MDR/TAP), member 1B	protein-coding	3.33194762656799	3.10679342417104	3.28189553207408	3.44957037852111	2.71746803790435	2.73172774600774	2.98363494558992	3.05511739333004	-1.8858087750307	0.00410188644401522	0.0408529662319178
Merged-chr5-96912976-4	chr5	96912870	96913070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8302.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	6.54218282578441	6.73937244499993	6.39758234799802	6.72567383237051	5.96866683758349	6.05315531579267	6.03439762447269	5.89455448593455	-0.953835213792422	2.9913989418267e-05	0.00072497373265333
Merged-chr16-94250270-4	chr16	94250203	94250403	+	901.90625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	39988.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	3.24508383148763	3.65219727483971	3.55721208498164	3.56553282550748	3.56572717422343	3.78242218694316	3.92016680966642	3.49855971570307	0.565728483610753	0.263436059366506	0.575452363653477
Merged-chr3-144897404-4	chr3	144897312	144897512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1401.0	NR_126537	622139.0	Mm.447150	NM_001039222	ENSMUSG00000074196	Clca4c-ps	Clca4c|EG622139|Gm18718|Gm6289	chloride channel accessory 4C, pseudogene	pseudo	6.55913121929184	5.95248234559829	7.5485767201359	7.12374775318865	5.45184467638351	6.21495904569045	6.67634620598372	6.30913414092908	-0.989798301136586	0.0900719385619598	0.327705505770892
Merged-chr12-76404188-4	chr12	76404109	76404309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008301)	promoter-TSS (NM_008301)	33.0	NM_001002012	15512.0	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	8.9526221181522	8.87647730064718	9.01869259358344	9.03332530159548	9.08883313227925	9.26468138852058	9.09870789361822	9.09449161154198	0.203560320641467	0.147103105943312	0.42788514025699
Merged-chr5-105416288-6	chr5	105416189	105416389	+	938.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033550, intron 1 of 4)	CpG	514.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	3.51528624451082	3.38688102788115	3.28561135062146	3.58333585657075	3.58449943591673	3.57615128034033	3.33535329360192	3.46009691273211	0.128381793952203	0.801273848924983	0.923340719847852
Merged-chr5-118645386-2	chr5	118645291	118645491	+	927.3333130000001	f0_c57.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	84672.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	2.88610735408477	2.87611654040104	2.88640114571681	2.49598889870163	3.66463876551202	3.3030927244612	3.94552321591939	3.96412204926727	4.17371873488689	3.5859027948788e-10	2.5142350865796e-08
Merged-chr4-95967267-2	chr4	95967167	95967367	+	943.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030014)	promoter-TSS (NM_030014)	-112.0	NM_030014	77963.0	Mm.49994	NM_030014	ENSMUSG00000028572	Hook1	A930033L17Rik|azh	hook microtubule tethering protein 1	protein-coding	3.08173451850934	3.22294947306275	3.27768514199968	3.57543707426813	3.32714650037991	3.32734149937856	3.48552476755453	3.68682122957573	0.498509249128605	0.377695218496875	0.680394065568127
Merged-chr15-81074700-4	chr15	81074591	81074791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	30356.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	6.65486888032611	6.6278962247408	6.43192429326878	6.60082223143857	6.7004024176326	6.46059223571969	6.43343259371934	6.06482595142452	-0.200814117376754	0.389879036538011	0.690126025603507
Merged-chr16-4880604-4	chr16	4880500	4880700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145359)	promoter-TSS (NM_145359)	-749.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	8.36873714490739	8.57678399525571	7.84993106937203	7.98028218367979	8.58797781446856	8.66476205269912	8.45705731872659	8.23003350520902	0.342391830844334	0.101343659949574	0.349327869353383
Merged-chr13-55895748-4	chr13	55895690	55895890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64365.0	NM_011097	18740.0	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	7.00159287969676	7.4826416779166	7.64178119620741	7.38082554102704	7.3030718514913	7.51936315499086	7.32602736638981	7.34739416012094	-0.0324029422418502	0.872202295977744	0.95194285598202
Merged-chr15-67424128-3	chr15	67424028	67424228	+	936.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	197359.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	3.63308409600667	3.80888049380055	3.68348933764498	3.93410625621121	3.38676540839195	3.2574196540245	3.39999674079045	3.34873495406053	-1.45118401893088	0.00520598768024716	0.048955934494362
Merged-chr8-79037811-3	chr8	79037708	79037908	+	740.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 1 of 14)	intron (NM_001294279, intron 1 of 14)	9371.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	3.97114209419762	4.05192201719479	4.1096403376357	4.40915471635023	4.05541698389485	3.82192031344643	3.80231096037156	3.57661386421028	-0.885414666710964	0.0600226825413682	0.258538851474254
Merged-chr17-81704907-4	chr17	81704799	81704999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	33488.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	6.36183847078039	5.88818351549246	6.52034902169089	6.64716915143502	6.13933995172143	5.59263824561575	5.74565768449766	5.92163920971426	-0.793891557547581	0.00539456257536166	0.0502399038125195
Merged-chr11-97799607-4	chr11	97799500	97799700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010688)	promoter-TSS (NM_010688)	35.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	6.40171074368508	6.50817583826999	6.69865859067313	6.59187853880912	6.18986514425318	6.09661298566737	6.31652650440485	6.48308468353574	-0.413736301986701	0.0647751789692037	0.270672329684687
Merged-chr4-102759492-6	chr4	102759323	102759523	+	878.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285852)	promoter-TSS (NM_001285852)	-712.0	NM_001285860	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	3.71521447893255	3.7630907978173	4.09694625897348	3.91684476786332	3.4499753830506	3.99406679483198	3.75477083545377	3.91813530205803	-0.274960064528657	0.568313413613548	0.808650514903046
Merged-chr3-41408559-4	chr3	41408468	41408668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84631.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	7.92068508971002	7.97284311013794	7.92200235697508	8.32546280736893	8.00280058145302	7.7485521774526	7.85512941361772	7.68243475866011	-0.290025395506771	0.118666921578895	0.381101362019176
Merged-chr2-73040203-4	chr2	73040087	73040287	+	976.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59741.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	5.90509682474613	5.40568968980748	5.74644952398526	6.05658507038236	5.71555677319743	5.19830136055668	5.87589835901299	5.76643831635032	-0.235338608800613	0.439578238200023	0.727408272116972
Merged-chr11-76889699-4	chr11	76889604	76889804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-14841.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	6.40068426449909	6.12739813515303	6.03521461447242	5.98329763829836	5.82928762268927	6.23143815491809	5.91668208742839	5.74575778855826	-0.314135024279278	0.223279688445401	0.531283845151273
Merged-chr2-12053484-4	chr2	12053394	12053594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-247752.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	5.80857493424854	5.71852041819898	6.22823691663457	6.26174058338839	6.13674085527596	6.13446700845326	6.01600808632596	6.67472936887725	0.349945859300086	0.214984731725209	0.521003650521557
Merged-chr14-13995666-5	chr14	13995623	13995823	+	927.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16768.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	3.59753878380665	3.26320672921225	3.31193666306581	3.49353365171289	3.56075374273263	3.86331135245727	3.36229082684874	3.59595502359398	0.579331237184291	0.261123231001267	0.573005209121725
Merged-chr12-91799167-2	chr12	91799067	91799267	+	716.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12731.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	2.94393899005048	2.78722780467247	2.88354230636187	2.67496230159451	2.68174958077043	2.99313143463565	2.87306563697553	3.05611806204905	0.384846576276173	0.53695328409398	0.790858067095524
Merged-chr2-118901368-4	chr2	118901268	118901468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045523)	promoter-TSS (NM_001045523)	-247.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	7.31559974377458	7.04565074378706	6.96619371369822	7.23815269733799	7.41997213512309	7.38740966439741	7.40595821731818	7.16025962306314	0.265466300912005	0.163784236316248	0.453548014190562
Merged-chr3-129429591-4	chr3	129429475	129429675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4098.0	NR_033594	435755.0	Mm.430561	NR_033594	ENSMUSG00000105712	Pou5f1-rs4	EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d	POU domain, class 5, transcription factor 1, related sequence 4	pseudo	6.62461539117399	6.77730710441008	6.5782545348272	7.18620021010838	6.54152109519403	6.38476693609619	6.29681992955068	6.69643227009063	-0.492185234203016	0.0432747137276198	0.211650113357251
Merged-chr3-31417163-4	chr3	31417081	31417281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106862.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	6.64853444448635	5.83491988560245	6.9529252191362	6.87731669344144	5.82326734662039	5.65148856889559	5.87207389175513	5.74034404574497	-1.33278171109451	1.04119260036828e-05	0.000285701804555182
Merged-chr16-15862912-1	chr16	15862812	15863012	+	995.3333130000001	f0_balb.idr	exon (NM_029354, exon 1 of 3)	exon (NM_029354, exon 1 of 3)	457.0	NM_029354	72083.0	Mm.22351	NM_029354	ENSMUSG00000022671	Mzt2	2410018G20Rik|2610001E06Rik|Fam128|Fam128b	mitotic spindle organizing protein 2	protein-coding	4.49739534392651	4.63043705275766	4.81248184988929	4.65549249583181	4.63394666937727	4.62960662831257	4.6813407740988	4.90948709781945	0.133723476964513	0.698324768270191	0.878303994693932
Merged-chr17-35762816-4	chr17	35762716	35762916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9634.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	6.00037424507027	6.23687939986626	5.95339031140665	5.81665688984657	6.66309252400703	6.4715134859133	6.57441979121547	6.75436857024187	0.93328258861283	4.64248144365558e-05	0.00105980496048095
Merged-chr8-70158727-4	chr8	70158632	70158832	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045484, intron 1 of 8)	CpG	5971.0	NM_001045484	17259.0	Mm.432505	NM_008578	ENSMUSG00000079033	Mef2b	AI451606	myocyte enhancer factor 2B	protein-coding	4.49830522593081	4.71861432706277	4.59118263061125	4.85775782551475	5.1806869835923	5.17776538007742	4.6964808269856	5.09638837531038	0.729489036895655	0.0363345195043223	0.189591818270565
Merged-chr16-30940135-2	chr16	30940035	30940235	+	865.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141297.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	3.27966848243359	3.34335235207563	3.16253653712808	2.92709136459909	3.4179763686247	3.44976864134878	3.02404333182589	3.16095733376232	0.364653261523494	0.528306022284234	0.784934672970676
Merged-chr15-73725519-6	chr15	73725408	73725608	+	938.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001166388, exon 1 of 6)	5' UTR (NM_001166388, exon 1 of 6)	578.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	3.90640323966275	4.07414366374527	3.85489511070666	3.75295485217206	3.75608547120354	3.86487650413871	4.07796457950708	4.33317114219123	0.344506362854308	0.448034651138486	0.73332468018769
Merged-chr10-61167532-4	chr10	61167422	61167622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-4442.0	NM_001017419	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	5.28453534888897	5.39296629585772	5.84291246542459	5.73413421092741	5.55084243992763	5.28864899741649	5.52685694005955	5.85996512202295	-0.0298225212340868	0.921036096912212	0.970761380985805
Merged-chr13-92722609-3	chr13	92722514	92722714	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72204.0	NM_011582	21828.0	Mm.20865	NM_011582	ENSMUSG00000021702	Thbs4	TSP4	thrombospondin 4	protein-coding	3.72982613619097	3.52406767571474	3.65478391585489	3.40056760403859	5.24552078017414	4.86212054987281	5.38805161307191	5.47668787820984	4.08214698535903	6.37953030614218e-19	1.89203578192039e-16
Merged-chr10-128082170-4	chr10	128082059	128082259	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1148.0	NM_016774	11947.0	Mm.238973	NM_016774	ENSMUSG00000025393	Atp5b	Atp5f1b	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	protein-coding	4.84530815654637	4.66367365591837	5.29406697574072	4.9604827158795	4.7521077276756	4.34156052967664	4.74958732035231	4.84285823186431	-0.551993662975134	0.133331904417904	0.406651453619076
Merged-chr9-110408195-4	chr9	110408062	110408262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081043)	promoter-TSS (NM_001081043)	48.0	NM_001081043	104831.0	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	7.13538706570718	7.06686951993263	6.84633627399659	6.43599923164919	7.12673502057267	7.37878478342103	7.17690604415419	6.97593069927447	0.394874605025685	0.0900446145635568	0.327673088958048
Merged-chr12-59061388-4	chr12	59061268	59061468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030057, exon 1 of 6)	5' UTR (NM_030057, exon 1 of 6)	104.0	NM_001306218	78232.0	Mm.290070	NM_030057	ENSMUSG00000020993	Trappc6b	5830498C14Rik|C79212	trafficking protein particle complex 6B	protein-coding	7.10246885246603	7.1953940240318	7.51378977661871	7.21232149895696	7.03746881980984	7.40727021000971	7.52788658550978	7.20326896985006	0.0522795673113741	0.799815102725043	0.922665648246429
Merged-chr9-63031577-4	chr9	63031478	63031678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50699.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	6.23258227831399	6.25374119823048	5.91161690543371	6.40868303219094	6.17675530462511	6.01472285886709	6.16351739787241	6.35521552228292	-0.0687655397136699	0.777381645308918	0.913165246826363
Merged-chr7-120835605-4	chr7	120835487	120835687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7244.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	6.89208974213044	7.14880860023933	6.26578766256637	6.77749258814873	7.55653834736908	7.40602389442317	6.87187346632576	7.37286188640704	0.709510833697	0.00524899994662891	0.0492705482264406
Merged-chr19-21274950-4	chr19	21274800	21275000	+	930.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009551, intron 1 of 5)	intron (NM_009551, intron 1 of 5)	2622.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	4.51336676690884	4.46624839496131	5.16331925247236	4.1141144722285	4.66768060224417	4.36138999511895	4.72318128556612	4.46809684975097	-0.101767385652039	0.814466833353615	0.928390081704136
Merged-chr5-121382938-4	chr5	121382853	121383053	+	934.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359947, intron 2 of 11)	intron (NM_001359947, intron 2 of 11)	2456.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	4.71725019793692	4.29811192389441	4.2069431297092	4.48860962179767	4.84028959022609	4.43673946051898	4.2400383071554	4.87874965755333	0.421412053359067	0.297361110101135	0.609457987730389
Merged-chr7-110863108-4	chr7	110863005	110863205	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053247)	promoter-TSS (NM_053247)	-152.0	NM_053247	114332.0	Mm.396078	NM_053247	ENSMUSG00000030787	Lyve1	1200012G08Rik|Crsbp-1|Lyve-1|Xlkd1	lymphatic vessel endothelial hyaluronan receptor 1	protein-coding	3.99596302701446	4.44547560474332	4.95831399825164	4.47337894540774	4.24461505153578	4.17874498439833	4.32640253605882	4.15527307947014	-0.664727464432012	0.125088017962359	0.392542105217475
Merged-chr2-13543794-4	chr2	13543694	13543894	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010067, intron 1 of 10)	intron (NM_010067, intron 1 of 10)	870.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	5.60887319464633	4.80309603901668	5.02833970945922	5.23072987142751	5.95691453396503	5.01272059371293	4.92891533563201	5.31951425546637	0.332708098425398	0.396984871928293	0.695569405558829
Merged-chr6-5255058-3	chr6	5254973	5255173	+	585.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173006, intron 1 of 8)	intron (NM_173006, intron 1 of 8)	1160.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	3.62931878135375	3.48310349429149	3.36835814973358	3.28673904666593	3.35598061155509	3.42214712843061	3.35583164158612	3.42322811004098	-0.177155229424302	0.730479560206833	0.893120645446556
Merged-chr3-88082867-4	chr3	88082777	88082977	+	971.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033484, intron 1 of 37)	intron (NM_001033484, intron 1 of 37)	826.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	4.15143602743966	4.85352726974773	4.24902938834516	4.27764065890218	4.52863482776673	4.116551221273	4.3621442703832	4.14960473871506	-0.250284438687071	0.562908043689138	0.805927740950101
Merged-chr9-46110810-4	chr9	46110697	46110897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	97977.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	5.4931925586876	6.40789133999313	5.58215952511976	5.08147228827777	6.07561683146742	6.22544206385583	5.83115415743084	5.36298955434933	0.280227604711968	0.459130511280692	0.741709236341626
Merged-chr11-34778438-4	chr11	34778336	34778536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	5469.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	5.51548709531469	5.74135506681277	5.92284065959819	5.80928959540861	5.77265481298899	6.03001226953806	5.75590499561224	5.87444579061133	0.158039881235321	0.538537994757799	0.791666974563585
Merged-chr7-127122019-3	chr7	127121883	127122083	+	930.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133686)	promoter-TSS (NM_133686)	46.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	3.55657167681079	3.32911346350288	3.60682694540846	3.54591764244524	3.41073846419991	3.38644231860035	3.38250857173265	3.39328959024387	-0.41164750403496	0.415235340055997	0.709526509262671
Merged-chr17-45724394-4	chr17	45724292	45724492	+	927.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9452.0	NM_028164	72240.0	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	4.39876721149701	3.92976128824436	3.80757585221421	4.40931846930674	4.29349599914378	4.44582993654545	4.33915236561214	4.22783779192726	0.362917986705941	0.405272255290656	0.702229213450513
Merged-chr6-86472402-4	chr6	86472320	86472520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131125, exon 5 of 5)	non-coding (NR_131125, exon 5 of 5)	8410.0	NR_131125	320486.0	Mm.391625	NR_131125	ENSMUSG00000085589	A430078I02Rik	T25621	RIKEN cDNA A430078I02 gene	ncRNA	8.21322327957981	8.4984101257788	7.9935332467859	8.01554885401108	8.38868197225045	8.59541936472467	8.12114154659764	8.34447298028336	0.226118069637491	0.23512648284562	0.545095525599075
Merged-chr11-86683938-4	chr11	86683830	86684030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175004)	promoter-TSS (NM_175004)	-53.0	NM_175004	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	7.70344255311592	8.13546818346621	7.31078887352495	7.32810029162308	7.7463951851087	7.98992342406605	7.39967077904559	7.37010490744142	-0.0147481537579382	0.952942349777247	0.983277820010102
Merged-chr4-138216378-4	chr4	138216276	138216476	+	899.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122896)	promoter-TSS (NM_001122896)	-236.0	NM_001122896	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	5.02838733672949	5.06836782108277	4.56266818654454	4.59651852609802	4.43524761734733	4.55787447720912	4.9115627167405	4.60231276568806	-0.408978668246127	0.278346819659123	0.590534970984105
Merged-chr7-97270494-1	chr7	97270394	97270594	+	770.0	f0_balb.idr	intron (NM_001162477, intron 2 of 9)	intron (NM_001162477, intron 2 of 9)	55470.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	3.59199871028001	3.40370104210519	3.54419585145435	3.59722051511625	3.04057747821312	3.0340850001855	3.25865477668011	3.43957611239903	-1.24749119344431	0.0266687575810248	0.155073563913059
Merged-chr11-17528053-3	chr11	17527953	17528153	+	955.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	270365.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	3.71028601588157	3.33999861709947	3.4689098948165	3.83815802281011	3.28258780304496	3.06298089589526	3.09294528285686	3.41256386982103	-1.38622445656988	0.0167736288358236	0.113515272394122
Merged-chr14-120285301-4	chr14	120285197	120285397	+	901.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	9628.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	4.47454932937163	4.4182073712251	4.21494661364967	4.36385256838545	4.59130127705552	4.2917407047228	4.1486165294146	4.34901512115577	-0.00971637635527788	0.980099835371078	0.992782655212549
Merged-chr4-6367680-4	chr4	6367566	6367766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	1986.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	5.71427457781741	5.44723611359738	6.16254651846759	6.25800428086731	5.76427192004111	5.83930433774355	5.94987583600032	6.44260204290415	0.121213446714452	0.699742100374797	0.878897269268221
Merged-chr15-62043948-4	chr15	62043862	62044062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	4705.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	5.88125128781536	5.36739840888626	5.94925405231076	5.77967902520903	5.91444607180326	5.91308244331756	6.17212475578011	5.96653449231913	0.377476271948066	0.154277459916035	0.439456383272923
Merged-chr7-104465266-4	chr7	104465183	104465383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009099)	promoter-TSS (NM_009099)	-90.0	NM_009099	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	7.8592893661052	7.77746004739156	7.59469281780936	7.28209216745877	7.45534578185204	7.57433688465602	7.42937684906578	7.70586502273657	-0.123109204026633	0.542130439308321	0.793675393131794
Merged-chr15-89196569-4	chr15	89196467	89196667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027081)	promoter-TSS (NM_027081)	-93.0	NM_027081	69440.0	Mm.482128	NM_027081	ENSMUSG00000015377	Dennd6b	1700027J05Rik|AI414881|Fam116b	DENN/MADD domain containing 6B	protein-coding	7.75872197400806	7.78325845368817	7.54081588938026	7.74904451755653	7.47595114657592	7.66177095723404	7.90818676108193	7.36840378708863	-0.127208534122163	0.505644792732116	0.771518828670524
Merged-chr14-30951368-4	chr14	30951254	30951454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011849)	promoter-TSS (NM_011849)	-23.0	NM_001308328	23955.0	Mm.251494	NM_011849	ENSMUSG00000021918	Nek4	Stk2	NIMA (never in mitosis gene a)-related expressed kinase 4	protein-coding	7.12059342729322	7.2979718049935	6.98428789994444	7.15923985673303	7.21545709047771	7.37897729920384	7.52029617157426	7.01836278998692	0.198094613278353	0.321543467033705	0.63320355346499
Merged-chr3-146784424-4	chr3	146784322	146784522	+	969.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011100, intron 1 of 9)	intron (NM_011100, intron 1 of 9)	-3006.0	NM_001164200	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	4.55780303646194	4.43998260014047	4.63945223070267	4.51467431932163	4.66858115171043	4.69071716371845	4.69317209706059	4.88445053062157	0.430534657735471	0.208645187380975	0.513007192521551
Merged-chr6-124414549-4	chr6	124414454	124414654	+	915.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360570, intron 1 of 14)	intron (NM_001360570, intron 1 of 14)	309.0	NM_001277330	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	3.81848179613781	4.22329959703878	4.02340918505274	3.63988906602979	4.03645909901096	4.09880591871777	3.80394199745074	4.19698314506604	0.285636933825007	0.533689508845974	0.788909198125842
Merged-chr5-102778028-3	chr5	102777936	102778136	+	821.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286468, intron 1 of 7)	intron (NM_001286468, intron 1 of 7)	9226.0	NM_001286468	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	3.71937905484669	3.76654469247331	4.01183673396855	4.08652685869783	3.8718629783848	3.66076674278636	3.65043471795937	3.87194483377442	-0.411942172483349	0.37666403354585	0.679367759065479
Merged-chr2-129360870-3	chr2	129360805	129361005	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8997.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	4.51786352432741	4.25093800052629	4.4808789344045	4.41002617596801	4.14679972297889	4.03553523301388	4.00945009354624	4.5521645754318	-0.514013425399037	0.210825909254029	0.515470506828542
Merged-chr8-121751654-2	chr8	121751554	121751754	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020605, intron 1 of 4)	B3|SINE|B2	21095.0	NM_020605	57340.0	Mm.306870	NM_020605	ENSMUSG00000025318	Jph3	JP-3|Jp3	junctophilin 3	protein-coding	3.45407919576412	3.27832989392236	3.15608975872479	3.21341616919086	3.60267910778184	3.51465892574779	3.49214778844013	3.341445157187	0.765363233150888	0.135805244860807	0.41022243778422
Merged-chr11-110430004-4	chr11	110429928	110430128	+	918.9652710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	30926.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	4.51870619260078	5.14295204986555	4.80463684668118	3.77846742788957	4.89070639381521	4.86662917727521	4.98188070416388	4.83737877187056	0.4870260842583	0.281231645374714	0.59334817221824
Merged-chr4-149486017-3	chr4	149485905	149486105	+	879.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133435)	promoter-TSS (NM_133435)	739.0	NM_026963	69151.0	Mm.464434	NM_026963	ENSMUSG00000028990	Lzic	1810030J04Rik|AW047580	leucine zipper and CTNNBIP1 domain containing	protein-coding	3.76016083724279	3.25050283611734	3.30627932258002	3.52143959814955	3.41302729992112	3.22136894961097	3.29459641048891	3.52659641832292	-0.357992946945531	0.509000773094674	0.773851211672984
Merged-chr11-101095468-4	chr11	101095344	101095544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008949)	promoter-TSS (NM_008949)	-9.0	NM_008949	19183.0	Mm.18344	NM_008949	ENSMUSG00000019303	Psmc3ip	C79099|GT198|HOP2|Tbpip	proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein	protein-coding	6.39534749772875	6.62100221899026	5.95530724677265	6.02837635365184	6.33065263968773	6.31049996947822	6.06052270406957	6.24879621372418	-0.0433714516302957	0.867321115865179	0.950313421774078
Merged-chr12-42181838-3	chr12	42181736	42181936	+	867.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-695779.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	3.97144529270869	4.26698405292552	4.06434656577063	4.63773954623879	3.66113830098827	3.34145975060662	3.75006564878106	3.51850474769163	-2.0311888655689	0.000123946102144068	0.00242705903838036
Merged-chr3-54601734-2	chr3	54601635	54601835	+	656.666626	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91080.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	2.47806264943565	2.49763225160668	2.47825814712154	2.280444116172	3.20424036724783	3.2153668493508	3.13602647980931	3.2986672717009	4.41377319837741	1.10411285232951e-08	5.80854757693735e-07
Merged-chr13-78236768-4	chr13	78236603	78236803	+	972.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045195)	TTS (NR_045195)	-37830.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	4.1216195222607	3.69197138437699	3.93878107481324	3.67871029981553	3.90525825820833	4.11121452029931	3.71072350461131	4.2414063692309	0.400519076015916	0.388058902131366	0.688846544177653
Merged-chr2-144204888-4	chr2	144204802	144205002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15612.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	5.74793762318822	5.83900754128654	6.00802643175066	6.37067259252939	5.90568260471612	5.95161375630726	5.79546936216455	6.08608012498739	-0.157230934889906	0.563669653272519	0.806428731514002
Merged-chr10-57828863-4	chr10	57828734	57828934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	34290.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	6.1880233073383	6.0391845402164	7.45478308635658	7.0646475811357	5.44839901859389	6.04295670399523	6.46717830526297	6.07639820836822	-1.11163004752632	0.0459414818223936	0.219969644466309
Merged-chr7-102266718-4	chr7	102266591	102266791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1133.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	5.50333225077539	5.40619054848362	5.14745426903426	5.37066671559272	5.23874570943656	5.25421620725399	5.34089152066637	5.39238889252635	-0.107003851986991	0.707519294868978	0.882495985165931
Merged-chr2-101810814-3	chr2	101810732	101810932	+	846.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	-13125.0	NM_001083810	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	3.01667109769563	2.98885698585185	3.20314465679078	3.27753139717665	3.31766907936636	3.31422031017027	3.30042104564117	3.14244638440812	0.504158757304331	0.3664585617348	0.670899490592347
Merged-chr1-97660979-6	chr1	97660884	97661084	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355072, exon 1 of 3)	5' UTR (NM_001355072, exon 1 of 3)	692.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	4.90252524470198	4.85721096217238	5.23004792640478	4.92495340253448	4.60131841511113	4.49377941257	4.65945650929143	4.59475631328492	-0.820005825937086	0.0171053977475791	0.115069001632637
Merged-chr18-70532211-4	chr18	70532084	70532284	+	897.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1863.0	NM_001289515	26447.0	Mm.244352	NM_011972	ENSMUSG00000038425	Poli	Rad30b	polymerase (DNA directed), iota	protein-coding	3.85173990493133	3.60880408751486	3.90456669425185	3.95921706703386	4.32417413997197	4.42679451223356	3.66826838718377	3.85008635583816	0.710719872455762	0.143021606547342	0.421101755219577
Merged-chr2-25547014-4	chr2	25546914	25547114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290413)	promoter-TSS (NM_001290413)	-74.0	NM_009422	22030.0	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	8.58625798662452	8.57614199529	8.55461468488124	8.40942285808967	8.66359063999328	8.69359862140032	8.81099024874081	8.62329172236857	0.213867265428172	0.147017316250754	0.427735358815141
Merged-chr18-12128641-4	chr18	12128518	12128718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024182)	promoter-TSS (NM_024182)	-232.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	7.90364698547147	8.09143703434582	7.83942503845885	7.95904351173474	7.71833931997352	7.66557247391287	7.83822579842147	7.59610469263765	-0.31951684002433	0.0558311772365413	0.247371679152528
Merged-chr6-57514515-3	chr6	57514418	57514618	+	874.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175523, intron 5 of 6)	intron (NM_175523, intron 5 of 6)	20908.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	3.4369053723781	3.49974838190186	3.48601429731528	3.39283912171125	2.97972122340358	2.92173640429311	3.15055036391903	2.88957827900909	-1.91638413262596	0.00165234660021558	0.0201598180762332
Merged-chr5-124483414-4	chr5	124483304	124483504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029532, intron 1 of 1)	CpG	249.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	6.04649976556743	6.52508613498077	6.06935900956137	5.69111288333215	6.35868268736821	6.3086388277835	6.23663005436031	6.22689154602671	0.272993837079777	0.311226151403435	0.62324859559111
Merged-chr11-6411876-4	chr11	6411785	6411985	+	850.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3985.0	NM_008907	268373.0	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	4.18641970560307	3.97269208225235	3.7554886273181	4.10953629916784	4.04946739236538	3.68997083752006	3.99571302635428	3.96311084951215	-0.226759551904352	0.612374727445315	0.83272620978202
Merged-chr5-69557720-6	chr5	69557618	69557818	+	815.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310631, intron 1 of 14)	intron (NM_001310631, intron 1 of 14)	794.0	NM_001310631	231279.0	Mm.21105	NM_172711	ENSMUSG00000029208	Guf1	4631409J12|AA407526|EF-4	GUF1 homolog, GTPase	protein-coding	3.53916950040914	3.64763465350866	3.84532437365254	3.69445108413051	3.57237464336454	3.59600061039921	3.52648896393037	3.79687358181971	-0.190279202412776	0.689676420999178	0.873573769379846
Merged-chr4-105254508-4	chr4	105254379	105254579	+	908.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97132.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.82456090814779	3.867524719385	4.16380437625579	3.89989487761881	3.74758868831073	4.24597884651341	4.18602995828219	3.97885838184532	0.280231786465664	0.529207862263564	0.785529298022193
Merged-chr12-85472947-1	chr12	85472847	85473047	+	912.0	f0_c57.idr	promoter-TSS (NM_010234)	promoter-TSS (NM_010234)	-943.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	4.5975092553113	4.48739255304589	4.0413805659988	4.20181361367258	4.49888992809036	4.26831064732423	4.17461365832178	4.28221805704251	-0.0598252194095749	0.884007495420516	0.956390337098447
Merged-chr10-93083434-4	chr10	93083337	93083537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1841.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	5.84338921174127	5.877928431938	5.58616374374256	5.5175570253834	6.02772973158104	5.64580180586741	6.15763572037675	5.99390015443853	0.436531411830493	0.101457373004094	0.349490825767668
Merged-chr16-17561324-3	chr16	17561235	17561435	+	963.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011028)	promoter-TSS (NM_011028)	-88.0	NM_001145435	74685.0	Mm.38634	NM_029053	ENSMUSG00000022759	Lrrc74b	4930451C15Rik|mCG12354|mCP17390	leucine rich repeat containing 74B	protein-coding	4.8498048596697	4.98506977517017	4.88111386776197	4.87914358379269	3.9196298405948	3.95150072814653	3.67093092435953	3.94831730115586	-2.59649586623237	3.25777435005304e-09	1.90381872300842e-07
Merged-chr15-76331210-4	chr15	76331102	76331302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010331)	promoter-TSS (NM_010331)	-92.0	NM_010331	14731.0	Mm.5903	NM_010331	ENSMUSG00000022561	Gpaa1	C80044|mGAA1	GPI anchor attachment protein 1	protein-coding	7.06808442206258	7.12337506075986	6.78998574142779	7.14045170529824	7.01245063262482	7.42185517148462	7.12577260206573	6.85704143706089	0.0992936185193708	0.640070788983074	0.847920170646856
Merged-chr11-120733785-4	chr11	120733645	120733845	+	923.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-1724.0	NM_007621	12409.0	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	5.09006468188484	4.61072629483592	5.23276732528181	5.12268768410075	4.38649239706372	4.46752324480148	4.9727200942806	4.7833812840704	-0.749748297514655	0.0466489763288161	0.222057620095397
Merged-chr11-95751187-2	chr11	95751087	95751287	+	944.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_201609, intron 1 of 4)	intron (NM_201609, intron 1 of 4)	2120.0	NM_201609	268469.0	Mm.389038	NM_201609	ENSMUSG00000075595	Zfp652	9530033F24Rik|ZNF652	zinc finger protein 652	protein-coding	3.20818672957684	3.47722324625377	3.07593808086602	2.66548570439053	3.49517649524608	3.71124709045208	3.31597888321594	3.32755844630519	1.17757502745461	0.06138318828431	0.262146394605442
Merged-chr16-32868363-4	chr16	32868271	32868471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001200038)	promoter-TSS (NM_001200038)	-5.0	NM_172615	100502698.0	Mm.327319	NM_172615	ENSMUSG00000035629	Rubcn	1700021K19Rik|5330403K09|Rubicon|mKIAA0226	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	protein-coding	7.18110758827303	7.16710837210752	6.40056383284518	7.02568970182093	7.06164937116084	7.22230795559789	7.02216351214142	6.80339571763225	0.0711686009149259	0.763912567109005	0.907492132891533
Merged-chr6-70792875-4	chr6	70792774	70792974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009075)	promoter-TSS (NM_009075)	-699.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	5.95994494799263	5.49183406480789	5.78654447223194	5.95043381384181	5.67373795831772	5.27164870152854	5.60921980284332	5.78242648206749	-0.353145300769618	0.211928892148062	0.516740975730402
Merged-chr17-27840019-4	chr17	27839918	27840118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011432)	promoter-TSS (NM_011432)	-69.0	NM_011432	20630.0	Mm.103949	NM_011432	ENSMUSG00000024217	Snrpc	Snrp1c|U1-C|U1C	U1 small nuclear ribonucleoprotein C	protein-coding	7.5414970903504	7.70832512821823	7.23011049811235	7.19136663261421	7.6514191542634	7.8469646211276	7.15924387558242	7.54647453822459	0.189867592269919	0.393153816121883	0.692348578207297
Merged-chr14-20765909-6	chr14	20765816	20766016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039138, exon 7 of 20)	exon (NM_001039138, exon 7 of 20)	28172.0	NM_001039138	12325.0	Mm.235182	NM_178597	ENSMUSG00000021820	Camk2g	Camkg	calcium/calmodulin-dependent protein kinase II gamma	protein-coding	5.29862994701657	5.30998014589294	6.05769994729942	5.65026987623717	4.91332742053065	5.0082925150381	5.24225822897616	5.02428707231219	-1.0281739348959	0.0019009201650045	0.02247974687238
Merged-chr3-54807817-4	chr3	54807719	54807919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133231)	promoter-TSS (NM_133231)	-28.0	NM_133231	170767.0	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	7.20847728838086	7.22582627755605	7.49989833895707	7.35403933294939	7.50923975134614	7.69541072175298	7.65082425449514	7.811491170927	0.450094923001235	0.0127912211193615	0.0940758760131259
Merged-chr12-102346642-2	chr12	102346556	102346756	+	768.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 3 of 9)	B3|SINE|B2	63015.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	3.44689456334556	3.26587339353708	3.34489893137487	3.08781768612368	3.47569910783374	2.93555232198688	3.27747891958334	3.04452987295646	-0.28757687625666	0.630468686084354	0.842870865234181
Merged-chr17-26660469-2	chr17	26660369	26660569	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15927.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	3.19350693355632	3.54722185898055	3.19392654603273	2.75641568349156	3.28424346390059	3.11427984575592	3.12202698542506	3.25004961142613	-0.0207099903606139	0.973379599421059	0.990485651958264
Merged-chr9-62972349-4	chr9	62972287	62972487	+	934.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	8492.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	3.79214575975671	3.68805064037535	3.63814189784339	3.64938645901107	3.82095480320046	3.6390593239871	3.67704738090551	3.79046498394221	0.149766759305263	0.7428526487121	0.898691548174051
Merged-chr10-67283717-3	chr10	67283616	67283816	+	816.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036293, intron 1 of 3)	intron (NM_001036293, intron 1 of 3)	1565.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	3.14658595318813	3.77394147070574	3.14692167145714	3.48329625756169	3.41160891610079	3.44640561315083	3.26246430731869	3.27239103378145	-0.238368305512807	0.675518586710112	0.866777974061798
Merged-chr3-107279042-4	chr3	107278959	107279159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026774, exon 1 of 4)	exon (NM_026774, exon 1 of 4)	201.0	NM_026774	68576.0	Mm.290035	NM_026774	ENSMUSG00000087260	Lamtor5	1110003H18Rik|Hbxip|XIP	late endosomal/lysosomal adaptor, MAPK and MTOR activator 5	protein-coding	6.52579204771986	6.43008091972646	6.76226816908798	6.71160442519607	6.38645894355437	6.12104341840025	6.60151192784808	6.29221048063124	-0.370536683617268	0.104903253379896	0.356262640027081
Merged-chr2-102942743-2	chr2	102942643	102942843	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41078.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.00557618221306	3.96607533253666	3.9090732233987	3.74809976383244	4.08748978994067	3.86754911703482	4.19942146350225	3.85557858554372	0.320496041726329	0.461781916680357	0.743501704400988
Merged-chr5-123015594-2	chr5	123015494	123015694	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	CpG	520.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	4.63035388146643	4.77653300968236	4.08571428437408	4.37983822200373	4.64691901107217	4.47025694727249	4.41095017247766	4.51188357967207	0.0594400218917947	0.87996799193281	0.955053012179765
Merged-chr2-154314063-4	chr2	154313974	154314174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001025574, exon 7 of 15)	exon (NM_001025574, exon 7 of 15)	6830.0	NM_001025574	433492.0	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838	BPI fold containing family B, member 9B	protein-coding	7.17915990584033	6.90143741896779	7.05441646414802	6.23071811785356	6.16173849984367	6.56147636530734	6.2926495844388	6.6337011566323	-0.657935097461189	0.0180403664126948	0.119337261020731
Merged-chr7-19092857-2	chr7	19092757	19092957	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_032418, intron 14 of 14)	intron (NM_032418, intron 14 of 14)	-1687.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	2.67639782737722	2.60161981416901	2.80570052807595	2.67977730458945	2.7921905515184	2.8491968308104	2.79558096763923	2.92134166568566	0.698044617225517	0.258308393003838	0.570161070139054
Merged-chr7-100946656-3	chr7	100946585	100946785	+	848.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	-14524.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	4.54607594856772	4.46929017075193	4.74893610601518	4.47881202572525	3.66327055137354	4.13598031734406	3.99325920270541	4.21166406201484	-1.4079175065542	0.00108977368587067	0.0144073181995893
Merged-chr2-58184330-4	chr2	58184212	58184412	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20338.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	5.50085086267391	5.1276457561866	4.72351532100391	5.08717369663213	4.70961395783943	5.02299605604983	5.06883937392488	4.91866997287675	-0.399910435487651	0.247769314611556	0.558928540740629
Merged-chr1-161713161-3	chr1	161713075	161713275	+	997.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75320.0	NM_001205243	14103.0	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	4.58246373368259	4.96433804209194	4.70016597703816	5.12537294055382	4.27888011955295	4.16268623306914	4.24290894468083	4.80397775069303	-1.04557138401177	0.00993003163143615	0.0785256884228412
Merged-chr7-127777704-3	chr7	127777615	127777815	+	982.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178029, intron 1 of 18)	CpG	326.0	NM_178029	233904.0	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	4.98367225704728	4.57734811881039	4.82513118190951	4.500905201491	4.67130661834038	4.65082876529109	4.36303614243928	4.55835745450787	-0.32807434255125	0.376400658261715	0.679172347306585
Merged-chr7-29767232-4	chr7	29767178	29767378	+	968.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1274.0	NM_023750	74352.0	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	4.66540057629221	4.85378087404474	4.4401970828461	4.87239361751868	5.02910860183799	4.88174143356074	4.90423104553339	4.99055428705181	0.445489943943409	0.188276341454989	0.486850123144918
Merged-chr8-26690142-4	chr8	26690066	26690266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134257.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	5.70196414522609	5.43604983650477	5.48307272847361	5.85577323289857	5.9784456177254	5.7462297054173	5.69893266989901	5.88602257330502	0.313803710395011	0.248211616483646	0.559293454564815
Merged-chr16-78217091-4	chr16	78216987	78217187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38367.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	7.38564742724808	7.44668919648753	7.81325652843191	7.926232559666	7.69847768320189	7.42239699445874	7.73803122818123	7.58243660755666	-0.0711682824783511	0.725726403595944	0.890921883682774
Merged-chr18-60795311-4	chr18	60795208	60795408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8541.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	6.4811529181002	6.07256529677098	6.27897636194702	6.3154600524253	6.82404435577033	6.74112546997457	6.83995382402916	6.80607009125933	0.741608549305593	0.000435286549512073	0.00689129477484872
Merged-chr5-97959837-3	chr5	97959732	97959932	+	940.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133738, intron 12 of 16)	MLT1E2|LTR|ERVL-MaLR	71130.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	3.8803911551277	3.67726516821872	4.00736088382591	4.0552385006271	3.29167091862037	3.3105319493908	3.45307157705627	3.40141872695034	-1.86791451711231	0.000367406319710022	0.0059857208584664
Merged-chr1-177644381-4	chr1	177644277	177644477	+	874.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1434.0	NR_037994	75589.0	Mm.86666	NR_037994	ENSMUSG00000101746	2310043L19Rik	-	RIKEN cDNA 2310043L19 gene	ncRNA	3.96177670273823	4.34619069431072	4.45105543520465	3.30391766021008	4.46764785475811	4.14197395535535	4.18821120260297	4.11232068075024	0.356790232950908	0.497270856826913	0.766982020988234
Merged-chr9-114844461-4	chr9	114844300	114844500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027294)	promoter-TSS (NM_027294)	-248.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	6.29523537918039	5.82350897614868	6.09401388100955	6.18643647474229	5.54987920071958	5.92948038364713	5.84662787905648	6.04908950105211	-0.423858692746557	0.10842475742768	0.363453226379618
Merged-chr17-27989950-4	chr17	27989840	27990040	+	883.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 9 of 24)	intron (NM_181413, intron 9 of 24)	80634.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	4.3262246889541	3.98706781733888	4.00439891171857	4.43104093297067	4.12956840858116	3.89779632732042	4.26606724510989	4.40286393646235	-0.0676198050488429	0.876362727699305	0.953509975464825
Merged-chr6-145116471-3	chr6	145116380	145116580	+	833.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281980, intron 1 of 18)	intron (NM_001281980, intron 1 of 18)	844.0	NM_001281981	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	3.77329578869068	3.74969706103085	3.4987351430214	3.28816300925988	3.82907870267621	3.73478983406674	3.54504628538405	4.03843656247191	0.663029144150921	0.187544955478051	0.485957858972414
Merged-chr15-59568019-4	chr15	59567914	59568114	+	840.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-80640.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	4.28927495490237	4.10717294774057	4.16077921294573	4.08266850602918	3.91300661997796	4.37533970427637	4.18639042194748	3.85356163768579	-0.168953157172598	0.691910731301832	0.87467626526963
Merged-chr8-72375066-4	chr8	72374970	72375170	+	927.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289859, intron 16 of 21)	PB1D10|SINE|Alu	46404.0	NM_001122832	13859.0	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding	5.76241585254071	5.36914470659717	5.50196921129202	5.3719283396398	4.80630232491677	4.76623358139983	4.69862085566816	4.57678717573033	-1.51303682923568	4.30209280595895e-06	0.000129808674792434
Merged-chr6-134897951-4	chr6	134897847	134898047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167696)	promoter-TSS (NM_001167696)	-14.0	NR_029441	72813.0	Mm.409034	NR_029441	ENSMUSG00000100876	2810454H06Rik	-	RIKEN cDNA 2810454H06 gene	ncRNA	6.8721463772609	7.07884198246557	6.40529596046626	6.45037798633045	7.27928383557596	6.99517974516161	6.85178516961455	7.06744226545343	0.469676367783854	0.0506312050881953	0.23333607134282
Merged-chr1-181228577-4	chr1	181228451	181228651	+	858.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16573.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	4.55843184202283	3.95116382197746	4.20656829867833	4.18085978956816	4.11222595136478	4.23816579609508	4.09526837380403	4.20396629405332	-0.187014891950285	0.653698354825132	0.855149414296956
Merged-chr13-80963427-2	chr13	80963327	80963527	+	868.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015587)	promoter-TSS (NR_015587)	-647.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	3.19546234697444	3.57728722506045	3.13621970213529	3.4728579911821	2.91902506592074	3.11746527246676	2.93097223723299	3.13466695192839	-1.36916135979411	0.022774700602904	0.139423790678086
Merged-chr6-5165155-4	chr6	5165105	5165305	+	938.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_181595, exon 16 of 16)	3' UTR (NM_181595, exon 16 of 16)	28741.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	4.36698053585701	4.35327141762864	4.36767398745491	4.30409652079923	4.1667553289515	4.00224919567834	4.26466911182066	4.14417655270387	-0.485281126625424	0.215743184473537	0.522006394984088
Merged-chr11-4843637-4	chr11	4843550	4843750	+	724.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010898, intron 1 of 15)	B3|SINE|B2	5894.0	NM_001252250	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	4.11178394069878	4.16630059935336	3.68879779962817	4.00731234348304	4.34241207139977	4.19035084990456	4.0016483648648	3.86184816573367	0.292414979721254	0.511788898971146	0.775640902406129
Merged-chr8-36533520-3	chr8	36533415	36533615	+	785.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44324.0	NM_176952	319582.0	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L|Trmt9b	RIKEN cDNA 6430573F11 gene	protein-coding	3.51562328478772	3.52848628735203	3.67363120257209	3.45247689908154	3.30625505894667	3.79262995428601	3.38719648144557	3.67142233013135	0.0241912856907089	0.962148445703142	0.986416651799321
Merged-chr9-40805467-4	chr9	40805374	40805574	+	908.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_031165)	TTS (NM_031165)	4201.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.38588525887531	4.08157643672785	4.29917048281707	4.04044393973846	4.55121719742178	4.59900757729249	4.44746375777192	4.34087811451717	0.706315208891091	0.0654129044499495	0.272266249099056
Merged-chr2-117374008-4	chr2	117373912	117374112	+	767.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31135.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	3.66541979972795	3.8500706886919	3.60710510330111	3.729012681615	3.94703083662524	4.09450276512694	3.90875249318302	3.8755364258576	0.679517248997869	0.123685449970296	0.390118608740004
Merged-chr14-34616963-4	chr14	34616845	34617045	+	785.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16803.0	NM_013887	30044.0	Mm.272060	NM_013887	ENSMUSG00000021799	Opn4	1110007J02Rik|Gm533	opsin 4 (melanopsin)	protein-coding	3.884342524192	3.73070755259192	3.78767510854483	3.96421833741904	3.70786209085855	3.85461101586208	3.77209922339627	3.50507927944951	-0.407500943958182	0.379551825743092	0.682104663432412
Merged-chr3-129213896-3	chr3	129213793	129213993	+	712.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287048)	promoter-TSS (NM_001287048)	-39.0	NM_001287048	18741.0	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	4.01308508537828	3.80346570179219	3.925038438016	4.29087210964378	3.25015991589606	3.67368972519226	3.65746779754161	3.4911442917171	-1.59781615094112	0.00194664152209043	0.0229328031944512
Merged-chr4-40251134-4	chr4	40251017	40251217	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11292.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	5.20334859571275	4.84633549519627	5.50719640569731	5.34820818842808	5.27533984208317	5.02644319931646	5.11522535093596	5.10367671083472	-0.205321271747712	0.522958945326798	0.782289783523866
Merged-chr6-125360208-4	chr6	125360075	125360275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 5 of 9)	intron (NM_011609, intron 5 of 9)	10452.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	5.8743216451892	5.48528253846237	5.84779831318771	5.8519277948667	7.15531055779241	7.3388193124633	7.19344610041821	7.0749318796637	2.04845507475935	6.63786716508436e-20	2.18739234696083e-17
Merged-chr13-64248992-4	chr13	64248900	64249100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122989)	promoter-TSS (NM_001122989)	300.0	NR_045798	66503.0	Mm.443331	NR_045798	ENSMUSG00000097101	1810034E14Rik	-	RIKEN cDNA 1810034E14 gene	ncRNA	5.99225613546774	5.67133422662248	5.47567650708819	5.80086991228661	5.92934589613388	6.12288384038663	5.56320766378368	5.61443069581073	0.129561127843317	0.646548375329259	0.851366985708531
Merged-chr3-38144301-4	chr3	38144199	38144399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63820.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	5.54988905481292	5.57330726781922	5.52250419354055	5.70983223570096	5.76021037192831	5.75394031663735	5.92474417765029	5.62832743412176	0.280036522395883	0.280297893858923	0.592326211649326
Merged-chr3-116859148-4	chr3	116859050	116859250	+	853.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113478)	promoter-TSS (NM_001113478)	-417.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	3.97686713733919	4.10643222929732	3.81474618133371	3.89577789848755	3.93239558506294	3.93702015857543	4.31132276703841	4.50843585334871	0.626499566906476	0.156077459084139	0.441973164391705
Merged-chr18-9707623-4	chr18	9707523	9707723	+	975.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130449)	promoter-TSS (NM_130449)	-25.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	5.92142119100158	5.63831791885864	5.82034403092967	6.00462632076601	4.9257710576554	5.11725869272158	5.02952335778485	5.16171876716096	-1.43516880748396	6.63764239071797e-07	2.40586211737463e-05
Merged-chr8-95887333-4	chr8	95887211	95887411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010325, intron 1 of 9)	intron (NM_010325, intron 1 of 9)	1054.0	NM_010325	14719.0	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	6.49984649757902	6.50189435454504	5.87045585169773	6.39756288977112	6.42818335801331	6.30879768609898	6.36829715123629	6.46393760450721	0.070137285426051	0.770846298680599	0.910321191255463
Merged-chr5-110879838-4	chr5	110879755	110879955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001267622)	promoter-TSS (NM_001267622)	52.0	NM_001267622	209683.0	Mm.295660	NM_024477	ENSMUSG00000033209	Ttc28	2310015L07Rik|6030435N04|AI428795|AI851761|BC002262|TPRBK	tetratricopeptide repeat domain 28	protein-coding	5.70828232664453	5.65822065987762	5.32998347350102	5.77487574206463	5.87779824500194	5.90888661654987	5.97011581891935	5.67976422785771	0.362951990598461	0.171899189277642	0.465135304640845
Merged-chr3-100489381-4	chr3	100489269	100489469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142952)	promoter-TSS (NM_001142952)	-177.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	8.16221245731118	8.20862756944185	7.95080818924395	8.10662209229522	8.33511708238155	8.32892122519143	8.36791423589879	7.95988834163534	0.189463781037755	0.268242594714054	0.580076430005696
Merged-chr9-35101784-4	chr9	35101688	35101888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-14940.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	6.61612095091905	6.86796158219629	6.72389962310316	7.0513063498496	6.66239341703014	6.58840675148045	6.43243224185645	6.71911518114678	-0.333286264021684	0.124874158852171	0.392224226705601
Merged-chr3-19183614-4	chr3	19183527	19183727	+	969.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3693.0	NM_001253390	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	4.84706378869456	4.53198157520456	4.77432325999158	4.80814221578268	5.10457029112905	4.74672248972307	4.75185853757964	4.91403882772355	0.30764539654657	0.364313802233025	0.669235191019446
Merged-chr10-125749218-4	chr10	125749133	125749333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-216986.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	6.85783208225153	7.02383807945909	7.1310674471062	7.27403421588586	7.04157623583699	6.96301180792382	7.62583712126186	7.36867446887296	0.253715240096585	0.261371592473548	0.573282650704877
Merged-chr10-105271422-4	chr10	105271322	105271522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177368, intron 9 of 11)	intron (NM_177368, intron 9 of 11)	303057.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	6.03359551639768	6.67366349931759	7.06186018318091	7.25580966018029	6.82871934467215	6.68432018336221	7.2465037528101	6.92330081591118	0.127596037869399	0.663969815757477	0.860803735967096
Merged-chr2-77277873-4	chr2	77277798	77277998	+	861.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 1 of 17)	L1MB7|LINE|L1	2694.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	4.14972687213161	4.56145261866808	4.04974468449062	4.23211837060709	4.26199570161349	4.32410995042066	4.03328726885965	4.40928309942776	-0.0048050081817449	0.990683369274809	0.996373953040518
Merged-chr10-94909549-4	chr10	94909469	94909669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 3 of 30)	intron (NM_018797, intron 3 of 30)	35009.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	7.24425220957798	7.62253356136021	7.64068698728217	7.50700725922177	7.64733403391616	7.48912426230476	7.42649239955625	7.40970409708914	-0.0166435592671266	0.928329926869855	0.973969592850704
Merged-chr18-35540210-4	chr18	35540114	35540314	+	812.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13196.0	NR_038073	100503380.0	Mm.482118	NR_038073	ENSMUSG00000097769	Snhg4	Gm17457	small nucleolar RNA host gene 4	ncRNA	4.17508064354903	4.2607406122002	4.08158751956429	3.81009082485764	4.10857747439314	4.39085266656217	4.20129595365393	4.12699675530176	0.330178935048282	0.432389265747645	0.722414748882746
Merged-chr4-155847408-4	chr4	155847314	155847514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010091)	promoter-TSS (NM_010091)	12.0	NM_001356381	13542.0	Mm.3400	NM_010091	ENSMUSG00000029071	Dvl1	Dvl|mKIAA4029	dishevelled segment polarity protein 1	protein-coding	7.5280762705484	7.71254788517126	7.67801009634327	7.53309313052975	7.80165906280759	7.87160747945698	7.34518251546849	7.70530209696875	0.111544658710703	0.552657654563484	0.799868677982226
Merged-chr17-50490869-4	chr17	50490770	50490970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18677.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	5.72918311659378	5.8331291095491	5.80486341076209	6.03907968017177	5.82336995003816	5.68515414545486	5.91185358730254	5.98050162799721	-0.0286341727173017	0.910216112576314	0.966671146059764
Merged-chr7-100853519-4	chr7	100853388	100853588	+	860.4464109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	9925.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	4.05323445195674	3.5926393093326	3.72998102091731	3.99830618528672	3.75625561690821	3.677867594722	3.54868498886647	3.77947131583836	-0.495938816003814	0.300529126024394	0.612477626586326
Merged-chr15-97789182-4	chr15	97789082	97789282	+	860.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026353, intron 1 of 2)	intron (NM_026353, intron 1 of 2)	4817.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	4.17443636076234	3.99509387476518	4.08948747990817	3.47541303785913	4.01324073374921	3.73354545710754	3.83068155397032	4.21303665634233	0.0319414549313259	0.948332652042719	0.981388084353081
Merged-chr2-45231016-4	chr2	45230917	45231117	+	940.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113575.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	4.50752343498942	4.41758579243701	4.24808737224177	4.4359200637201	4.51282697597913	4.55651806817396	4.36514222245283	4.24556131198969	0.047388780844182	0.899192380081747	0.962471390297979
Merged-chr8-14859657-4	chr8	14859649	14859849	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28787.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	4.23278682086904	4.54524247710015	4.61970635318189	4.97427641289728	4.33426569566389	4.20040061613849	4.31090432014344	4.5404239546482	-0.653612910652628	0.109780601695208	0.365876223508832
Merged-chr12-112589127-3	chr12	112589030	112589230	+	962.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 1 of 22)	intron (NM_198411, intron 1 of 22)	346.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	4.30499074676527	4.54065631115169	4.35039596743198	4.04805855101936	4.50332544251191	4.86245655796734	4.28638117221834	3.93925923909995	0.288593515000159	0.512288398793551	0.775767507823295
Merged-chr17-17375764-4	chr17	17375663	17375863	+	880.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025934, intron 1 of 9)	intron (NM_025934, intron 1 of 9)	1431.0	NM_025934	67045.0	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2	protein-coding	3.98857410205503	3.52003025973352	4.03986951111846	3.8699884051194	4.29280453142307	4.62788174659561	3.92010450595606	4.38378175633033	1.17892325398602	0.0101149515072634	0.0795901098093635
Merged-chr15-102525299-4	chr15	102525231	102525431	+	771.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018787)	promoter-TSS (NM_018787)	-710.0	NM_018787	54615.0	Mm.445915	NM_018787	ENSMUSG00000023052	Npff	-	neuropeptide FF-amide peptide precursor	protein-coding	4.17857140440817	4.17969424901662	3.84323681914502	3.86383353315052	4.28649085559763	3.90770059869514	4.07384056741203	3.78527671161862	0.0481350043796711	0.91496931041051	0.968369617130045
Merged-chr1-64303079-4	chr1	64302983	64303183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-181694.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	7.12040029744014	7.42708889011509	7.30841255927245	6.93034151920711	7.4205367894143	7.36769618006605	7.17688285677104	6.93883152596891	0.0566987197048139	0.792100931862611	0.919484527040164
Merged-chr7-19257573-4	chr7	19257495	19257695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104069, exon 11 of 11)	non-coding (NR_104069, exon 11 of 11)	14259.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	5.84648841774828	6.15208078450419	6.07236632825013	5.62529732630781	6.29690816183408	6.04849446863246	6.08157958687381	6.04727215753322	0.3220010360179	0.213600017098237	0.519119274084025
Merged-chr11-85812655-4	chr11	85812560	85812760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	19728.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	6.78151219634571	6.52483410205429	6.50148908695806	6.52398128002572	6.49501731533006	6.48139322092856	6.252696107271	6.44608989879905	-0.230687722578019	0.285104686639194	0.596866661479153
Merged-chr8-123212871-4	chr8	123212780	123212980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177279)	promoter-TSS (NM_177279)	22.0	NM_177279	320869.0	Mm.258354	NM_177279	ENSMUSG00000048478	Spata33	4732415M23Rik|AI847264	spermatogenesis associated 33	protein-coding	7.16492730309728	7.02462104125251	7.26409514409732	6.95415012202109	7.29670208656339	7.30854201859009	7.11889483462893	7.17240742306322	0.180497870437	0.339940396548264	0.648997231458602
Merged-chr4-43443284-10	chr4	43443168	43443368	+	882.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011571, exon 1 of 10)	5' UTR (NM_011571, exon 1 of 10)	991.0	NM_011571	21754.0	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	3.90582756677481	3.6621868760222	3.65519002336648	3.63592602780137	3.65485737430807	3.82881830598764	3.52658942486474	4.03359991004953	0.172561287262274	0.717140347771111	0.886902970891993
Merged-chr8-68278477-4	chr8	68278376	68278576	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028182, intron 1 of 8)	intron (NM_028182, intron 1 of 8)	1948.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	3.99216256662319	4.06274744354687	3.47482043500847	3.62525915467983	4.35049446832264	4.29722195741865	3.87738882782425	3.78453545438591	0.804905231043662	0.102633248304257	0.351911555520436
Merged-chr9-77756278-4	chr9	77756193	77756393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151778, intron 1 of 16)	intron (NR_151778, intron 1 of 16)	1758.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	5.38234582622334	5.44891937180563	4.88316431687045	5.26657826209784	5.58455765236634	5.5582711541043	5.71249062858112	5.59657819511126	0.605385275672887	0.0358185768220812	0.188003854279366
Merged-chr5-12383432-4	chr5	12383307	12383507	+	824.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028882, exon 1 of 18)	5' UTR (NM_028882, exon 1 of 18)	241.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	4.25651362249831	4.23580852010971	4.21146393873566	4.57943966455593	4.29583941630621	4.23990828211512	4.48000263290542	3.8956286494363	-0.236814820595402	0.574551947111624	0.81246206040379
Merged-chr1-34831353-4	chr1	34831265	34831465	+	870.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 2 of 6)	intron (NM_001160236, intron 2 of 6)	11685.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	4.93021846645781	4.57837221713403	4.67367847736284	5.42712502710908	4.30272365216189	4.53615164646815	4.69154006460424	5.02363601782221	-0.620047259243663	0.13733255666916	0.412168754588966
Merged-chr11-95347069-4	chr11	95346952	95347152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172543, intron 1 of 7)	B4A|SINE|B4	10034.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	5.23515726550589	5.12940497977704	5.03832778163668	4.8042126298131	5.33086946547752	5.49659975697528	5.40585861944727	4.99884073278457	0.51336283728216	0.103371639457487	0.353254142575597
Merged-chr11-114988110-6	chr11	114987947	114988147	+	871.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145437, intron 1 of 3)	intron (NM_145437, intron 1 of 3)	1839.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	3.78062594838068	3.40484173934478	3.63693172680808	3.72631582407894	3.32193232682981	3.46703794172156	3.62185024683555	3.52883233802427	-0.533778011237617	0.289842049157591	0.601915892545243
Merged-chr18-9449507-3	chr18	9449408	9449608	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026484, intron 1 of 9)	CpG	646.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	4.88582821435144	4.99485778545617	5.43151501242742	5.36161508242416	4.95672216880294	5.06531956113038	5.26764362780566	5.45340464876045	-0.00698311214419875	0.983209250056748	0.993961726622864
Merged-chr13-52059933-4	chr13	52059843	52060043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-36798.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	6.63671234547602	6.49030014012201	6.70772633272099	6.54866411675845	6.21936217907698	6.15033355989257	5.94070437805517	6.14811713721987	-0.702560865838007	0.00161684669250511	0.0198184141081146
Merged-chr10-110727936-3	chr10	110727857	110728057	+	900.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17482.0	NM_001358560	52679.0	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e|E2F-7	E2F transcription factor 7	protein-coding	3.34090530475405	3.38122337118779	3.39982416335838	3.69955442038904	3.52664804890905	3.25801932909731	3.54623420344552	3.50748280830137	-0.0358956943528296	0.94567299156249	0.980596379383872
Merged-chr2-117146792-4	chr2	117146661	117146861	+	782.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277256, intron 1 of 4)	intron (NM_001277256, intron 1 of 4)	25690.0	NM_033524	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	3.73171974742413	3.49680847311923	4.05744432821836	4.02428100165845	3.64681472999011	3.61768211197014	3.6638914821681	3.92577119790851	-0.399546034893826	0.417125519654956	0.710879846801198
Merged-chr15-64128132-3	chr15	64128033	64128233	+	959.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 17 of 28)	intron (NM_001276461, intron 17 of 28)	-67685.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.37509619147605	3.80012463296809	3.95065854993276	4.21870565469477	4.08154985230397	3.78928471438756	3.88342583761159	4.04548877234994	-0.394371686704093	0.38372176187738	0.685515575911105
Merged-chr10-84549982-4	chr10	84549876	84550076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040658, intron 2 of 3)	(A)n|Simple_repeat|Simple_repeat	3362.0	NR_040658	442847.0	Mm.128292	NR_040658	ENSMUSG00000097076	Platr7	C330046G13Rik	pluripotency associated transcript 7	ncRNA	6.13367097244192	6.0763818099303	5.92448897016993	5.45184767146412	6.040768591157	5.90474104682185	6.15972423614664	6.11086165604461	0.244246435737048	0.375649930755117	0.678595291948235
Merged-chr11-117072326-4	chr11	117072228	117072428	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4455.0	NR_027059	76972.0	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	5.29935228890332	5.13179718287994	4.78113832056576	5.01696848539286	5.46921422012148	5.11800780733842	4.87989710178463	5.35207247207783	0.311277065297491	0.345419237191743	0.653728716702946
Merged-chr1-152902437-1	chr1	152902337	152902537	+	1000.0	f0_c57.idr	intron (NM_001160257, intron 1 of 23)	CpG	208.0	NM_001359257	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	5.73549527545806	5.57335920308973	5.37929755626221	5.3327070162245	5.82668397041737	5.78584948408377	5.32080658187926	6.06623892041505	0.458489247408057	0.11981018284592	0.383158961440884
Merged-chr11-54963038-3	chr11	54962976	54963176	+	951.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199276)	promoter-TSS (NM_001199276)	-136.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	3.2734350137479	3.54391349754279	3.20835805062697	2.51251122264433	3.89717238016013	3.39250861974782	3.7773930007294	3.39423229129926	1.40175928956888	0.0553817064839606	0.246099043939432
Merged-chr1-59238123-4	chr1	59238032	59238232	+	836.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028717)	promoter-TSS (NM_028717)	-901.0	NM_028717	74018.0	Mm.272078	NM_028717	ENSMUSG00000026024	Als2	3222402C23Rik|9430073A21Rik|Als2cr6|Alsin|mKIAA1563	alsin Rho guanine nucleotide exchange factor	protein-coding	4.51218403703437	4.24341116536233	4.09500034345669	4.39714460780694	4.25766646572321	4.75983343688928	4.2784474290729	4.79258942711397	0.491283995816718	0.227738059454149	0.536465946363434
Merged-chr13-3525924-4	chr13	3525784	3525984	+	986.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12191.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	4.8478940464365	4.81658001676256	4.88394110183695	5.14467003568905	4.65723588692688	4.40367219141239	4.92748303725077	4.80924763190123	-0.472261161145677	0.179717616306493	0.475932740943519
Merged-chr5-124446031-5	chr5	124445926	124446126	+	934.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310727)	promoter-TSS (NM_001310727)	527.0	NM_001310723	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	3.31160602325438	3.56814623642277	3.53572180541615	3.39640788198604	3.26187694537857	3.59940053829552	3.10635364684238	3.5838849125103	-0.188822653356369	0.727139954245662	0.89136476023856
Merged-chr2-32404868-4	chr2	32404780	32404980	+	905.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8990.0	NM_133783	96979.0	Mm.28048	NM_133783	ENSMUSG00000026820	Ptges2	0610038H10Rik|C79137|Gbf1|Mpges2|Pges2	prostaglandin E synthase 2	protein-coding	4.44193743491627	4.92111551891279	4.62267672215104	4.32742365801008	4.8682563562854	5.12549792486314	4.64229295509353	5.07453537551989	0.72443201159826	0.0493582958132162	0.229851104853707
Merged-chr8-81767199-4	chr8	81767097	81767297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001297593, intron 4 of 23)	intron (NM_001297593, intron 4 of 23)	424635.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	5.24496218512462	5.05868338551243	5.3596260691191	4.99526219991323	5.47271457900337	4.63698599958663	5.15926623534226	5.18129165703094	-0.00353578781691604	0.991810628827281	0.996880533619005
Merged-chr9-82980560-4	chr9	82980474	82980674	+	755.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5085.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	3.62097714009512	3.28610639977488	3.20185618159241	3.43966218346036	3.82409321094489	3.57346918100074	3.55469820918875	3.80921144561887	0.966042607283015	0.056986531469864	0.250169256413806
Merged-chr17-30027889-4	chr17	30027786	30027986	+	987.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151443, intron 1 of 4)	intron (NR_151443, intron 1 of 4)	22847.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	5.20822329512891	4.969271373444	5.02113067496972	4.80948476588918	5.38900724254922	4.93740703713733	4.96279644599085	4.75661289545553	0.0999718756125763	0.771131170149962	0.91036734532567
Merged-chr4-108546247-1	chr4	108546147	108546347	+	822.0	f0_c57.idr	intron (NM_175472, intron 25 of 30)	intron (NM_175472, intron 25 of 30)	33089.0	NM_172697	230596.0	Mm.157534	NM_172697	ENSMUSG00000063800	Prpf38a	2410002M20Rik	PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	protein-coding	3.19174126666784	2.77524345147565	2.76642502899873	2.80065643300726	3.67949771479432	3.68412462972324	3.17965739683621	3.36187478142571	2.33896731565223	0.000147522047175967	0.00281207989901167
Merged-chr6-87732536-3	chr6	87732433	87732633	+	693.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 1 of 7)	intron (NM_001159697, intron 1 of 7)	1664.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	4.32006795260983	4.09507474296786	4.46685920534662	4.03175710373523	4.16383942874425	3.80216187024444	3.39317648894826	4.06124647703966	-0.903057728448971	0.0797473518102661	0.305781679246886
Merged-chr9-62363838-3	chr9	62363750	62363950	+	991.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	CpG	22507.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	4.44809242281597	4.50760344759568	4.16941553278679	4.67690893589701	3.65071074644587	3.74707393785177	3.54454956293057	3.75050659364637	-2.2696492700483	1.79166097354863e-06	5.92054950957373e-05
Merged-chr15-67345679-4	chr15	67345565	67345765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045140, intron 7 of 8)	RMER19A|LTR|ERVK	118896.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	6.29533154746812	5.94323064571085	6.57912308273068	6.49220347922	6.17867096867719	6.22796251187512	6.58911804966978	6.19511892743494	-0.0706274929108756	0.781868064491611	0.915127881120275
Merged-chr2-112454980-4	chr2	112454894	112455094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133749)	promoter-TSS (NM_133749)	-31.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	7.89591451256328	7.9837192979426	7.92693113521662	8.31000820337043	8.43308675194508	8.28219598082857	8.1279791987586	8.13678322745829	0.259982423834594	0.151972875843857	0.435846541018322
Merged-chr16-14350944-4	chr16	14350840	14351040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-10618.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	7.46909152383488	7.45876866032491	7.66844169176389	7.12651952038138	7.37210313201439	7.70207792934241	7.39562456654326	7.13636158216148	-0.0265727828955667	0.900355546747286	0.963086977653908
Merged-chr3-126597124-5	chr3	126596974	126597174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001293665, exon 1 of 20)	5' UTR (NM_001293665, exon 1 of 20)	123.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	6.62953646854604	6.3866619100076	6.86291133860004	6.35676968019138	6.45159185174612	6.32017014642397	6.38569160555409	6.68459512588114	-0.136710036857648	0.56218746377405	0.805457649483165
Merged-chr9-94665120-1	chr9	94665020	94665220	+	773.0	f0_balb.idr	Intergenic	Intergenic	-4772.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	4.33763355136163	4.03674004911027	4.11486978266379	3.85903433004254	4.41427988776933	4.42474588356251	4.27699433479918	4.11240825902044	0.587905620838269	0.153328027534256	0.437898153186247
Merged-chr3-97993753-4	chr3	97993634	97993834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19804.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	5.79660692425186	5.66432434975606	5.52098713396711	5.96635236768693	5.49105374832869	5.63952918360796	5.52094662421057	5.27007973709503	-0.469412869201805	0.0929323825978388	0.333571527109891
Merged-chr8-3314014-4	chr8	3313912	3314112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34395.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	6.30282676472884	5.952684678663	6.17205641164658	6.61939836180682	6.1646347552599	6.08572708660309	6.07977415183105	6.0642660952947	-0.308409865979305	0.229131790953087	0.538010661957944
Merged-chr7-105779120-4	chr7	105779029	105779229	+	853.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162943, intron 1 of 20)	MIRb|SINE|MIR	8421.0	NM_001162943	233651.0	Mm.334108	NM_001162943	ENSMUSG00000036862	Dchs1	3110041P15Rik|C130033F22Rik|CDH25|FIB1|Gm165|PCDH16	dachsous cadherin related 1	protein-coding	4.04572835959063	4.0117565636207	3.99687440789965	4.32097260916053	3.95071128761699	3.83708128538553	4.1654227266113	4.38193791273251	-0.041222018877507	0.925544516918639	0.972503515835845
Merged-chr11-111159494-4	chr11	111159411	111159611	+	899.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93347.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	4.68376145195578	4.33391596403504	4.13648861569646	4.52290532795022	5.05801649888546	4.92730421984038	4.37355976078415	4.60471740651427	0.726158500983973	0.0688509455853799	0.280410908955871
Merged-chr16-8869978-2	chr16	8869878	8870078	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39878.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	3.23652495541158	2.96440918588653	3.18211780732607	2.98783231143387	3.00040932388325	3.04484177299269	3.32531888132886	3.00053953809213	0.0302959599271796	0.958282358674721	0.985132367713398
Merged-chr2-59336724-3	chr2	59336624	59336824	+	919.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 12 of 20)	intron (NM_175464, intron 12 of 20)	49958.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	3.55258704448747	3.60695598139485	3.43668567510221	3.65432805443517	3.22934942063156	3.67025431721111	3.78805362913259	3.80273627641049	0.209377776580564	0.686042768603138	0.871760528240684
Merged-chr8-26884590-4	chr8	26884503	26884703	+	936.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60180.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	5.1624214901068	4.80145514551843	5.19460851379867	6.09148740917536	4.9178409713652	4.75900893632542	4.69155362064652	5.12765982817783	-1.01114317153326	0.0142269374168799	0.101038821650114
Merged-chr7-35729832-4	chr7	35729733	35729933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	24621.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	7.23915179021726	7.10132111063593	7.33786101390064	7.5604935857763	6.222768930326	6.42370855809102	6.54023791852195	6.71533877678457	-1.19371372752934	7.16625578877498e-08	3.16234916794305e-06
Merged-chr14-103793653-3	chr14	103793521	103793721	+	839.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD1|LINE|L1	50080.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	3.30928281182702	3.26782053659152	3.14735787647107	3.39517221264498	3.02347898283877	2.9268891799562	2.8851171113794	3.02494604733651	-1.32765890889359	0.0254986056319565	0.150541663919083
Merged-chr10-45048835-4	chr10	45048738	45048938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18376.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	6.66931296057175	6.51116126464078	6.5646361525061	6.89148497836244	6.13633930050299	6.27074360824934	6.60722460494642	6.31715798310104	-0.499949362543851	0.0321120751573036	0.175149838898216
Merged-chr17-28525049-3	chr17	28524948	28525148	+	869.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-5813.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	3.40197659592646	3.12429268923879	3.15822740683132	3.46492680882788	3.42340209699036	3.62551777407483	3.27429921422671	3.60556734376609	0.62059737844046	0.252712930523804	0.563984491060167
Merged-chr18-61107790-4	chr18	61107716	61107916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 2 of 21)	intron (NM_001037859, intron 2 of 21)	2244.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	6.16041747353992	6.3177336742779	6.32009777847239	6.50803963686967	6.23625882606871	6.29647029205795	6.30611870479892	6.89972820794305	0.175710838029524	0.490309759435442	0.762174753407996
Merged-chr3-116185418-4	chr3	116185338	116185538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-55750.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	5.50445612721456	5.74952583769195	5.38518421677974	5.69231142124756	5.56792349901898	5.62321480086303	5.84590561028616	5.73644122389144	0.151594689545978	0.573902009039631	0.811973307930812
Merged-chr3-88325020-4	chr3	88324908	88325108	+	897.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020003)	promoter-TSS (NM_020003)	-15.0	NM_020003	56700.0	Mm.439922	NM_020003	ENSMUSG00000001418	Glmp	0610031J06Rik|AB027141|NCU-G1	glycosylated lysosomal membrane protein	protein-coding	4.50373603381932	4.41862144863731	4.28356897385695	4.453997297766	4.6015941769985	4.25723352597568	4.40071965947776	4.85264365037841	0.297638123649306	0.434901047222616	0.724129725613665
Merged-chr3-60615505-7	chr3	60615405	60615605	+	992.7551269999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 5 of 7)	intron (NM_001253711, intron 5 of 7)	114326.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.40251336617081	4.89587674867444	4.67787616744941	4.0278075621633	4.58777626943893	4.44227289028165	4.24633732481979	4.26220767409688	-0.311178761288214	0.473810182212145	0.751365889135324
Merged-chr19-44245957-3	chr19	44245866	44246066	+	910.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42678.0	NM_024450	30049.0	Mm.480594	NM_024450	ENSMUSG00000025202	Scd3	4930513N16Rik	stearoyl-coenzyme A desaturase 3	protein-coding	3.70206484102147	4.04025252315392	3.84835000209182	3.56389513257795	3.44562740852195	3.39691701165516	3.87560111629867	3.34923087207537	-0.821008056739585	0.119927685350353	0.383350652881906
Merged-chr6-124425186-1	chr6	124425086	124425286	+	551.0	f0_balb.idr	Intergenic	Intergenic	-9331.0	NM_001360570	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	3.43218135813718	3.06221443529518	2.70986130564311	3.05578632688328	2.99569493223124	3.1073538826549	3.04930800369835	3.28436661179441	0.0968253375622208	0.878185149357814	0.954442386034017
Merged-chr7-35710483-4	chr7	35710339	35710539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 12 of 18)	intron (NM_178704, intron 12 of 18)	44015.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	6.35439778973015	6.27658394926805	7.00137718129318	6.4556211876996	5.59636063283466	5.71897136706401	5.94427943823761	6.038830058135	-1.10601839344233	6.31542721542369e-05	0.00137891347781179
Merged-chr2-33978705-4	chr2	33978608	33978808	+	997.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90762.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	5.77609538415824	5.72938575201383	4.92705995510863	5.62948316713888	6.26753160328711	5.74666176885095	5.72355021531212	5.99212041597525	0.649911799742604	0.040187268134107	0.202361389236256
Merged-chr6-140763766-4	chr6	140763661	140763861	+	852.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136876.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	4.07323961463103	4.22321023483008	4.60455615377047	4.87764028765864	4.02562352684098	4.45088857406182	4.30261868142718	4.4880682098868	-0.409159397877846	0.356352586895641	0.662837974825433
Merged-chr8-46745693-4	chr8	46745598	46745798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	5953.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	5.37282057359953	4.99092597856754	4.88250205625403	5.38421783748892	5.02423225424325	5.09942315061388	5.14237882729608	5.44874736034618	-0.00868343585747761	0.978833006931123	0.992516114931184
Merged-chr17-29998570-4	chr17	29998449	29998649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6490.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	5.76556297291665	6.57345778242806	6.04026092127812	5.70517503009758	6.6303489992737	6.36470521504693	6.17604305600204	6.54498637041302	0.572909122254936	0.0467787879985988	0.222388867585283
Merged-chr11-68514131-4	chr11	68514023	68514223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004435, intron 1 of 19)	MurERV4-int|LTR|ERVK	11104.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	6.71404066226691	7.28032313604055	6.46154828444187	6.0934779316552	6.59343814907343	6.7395785906413	6.51286442327233	6.30812096102652	-0.23190237369677	0.433462507115517	0.723001565008487
Merged-chr17-35919492-1	chr17	35919392	35919592	+	701.0	f0_balb.idr	5' UTR (NM_001357740, exon 1 of 19)	5' UTR (NM_001357740, exon 1 of 19)	220.0	NM_001357740	52040.0	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	3.73962878696454	3.79321944480592	3.58369908475418	3.50912814072289	3.46918235585953	3.64355259108964	3.51384942088055	3.83234923244169	-0.115993528742362	0.812185394769053	0.927446105799334
Merged-chr4-58912743-4	chr4	58912627	58912827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172381)	promoter-TSS (NM_172381)	22.0	NM_172381	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	5.92179632964221	5.68317426800102	5.96556738216169	5.94090622713497	5.50639992402669	5.57056622126987	5.87079930410125	5.96130144233315	-0.243874351590349	0.360663912725982	0.665936747041206
Merged-chr5-136170714-4	chr5	136170645	136170845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178751)	promoter-TSS (NM_178751)	-89.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	5.91294921868572	6.4067205678577	6.10803738125822	5.58896964974117	6.29290774952489	6.09035196897334	5.92929374919947	5.73539898296592	0.010463433090018	0.971708134381019	0.989737326894157
Merged-chr5-148489110-4	chr5	148489014	148489214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4A|LINE|L1	62559.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	5.31233508076353	5.06938784861248	5.28326515840563	5.32913535733193	5.18568635458286	5.2976490062039	5.59749572995692	5.15220686251756	0.109084404188928	0.716035915419619	0.886371813543908
Merged-chr8-70701534-4	chr8	70701482	70701682	+	939.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010592)	TTS (NM_010592)	3843.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	4.07768586567941	4.2504087935501	4.35985028697059	4.13596389454048	4.28801026755484	4.20372143879886	4.45923985355203	4.62175574956469	0.472214876970889	0.227550549456008	0.536229781815236
Merged-chr19-6018320-4	chr19	6018225	6018425	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045783, exon 5 of 5)	non-coding (NR_045783, exon 5 of 5)	-2500.0	NM_001110504	12333.0	Mm.6221	NM_007600	ENSMUSG00000024942	Capn1	Capa-1|Capa1|mu-calpin	calpain 1	protein-coding	4.53489974318154	4.94237797707984	3.98425323627853	4.27068223561855	4.73646052771363	4.82441214619439	4.59314319091866	4.3100281147038	0.329836429045032	0.447446301456692	0.732976564773399
Merged-chr2-155082538-6	chr2	155082468	155082668	+	784.972229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8071.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	3.70041854058639	3.71555418719544	3.70090396787202	3.79434003755105	4.04878511345819	3.69860867883668	4.11953116806933	4.32634712049079	0.925441070763811	0.0414573612388155	0.206197576383038
Merged-chr17-13007808-4	chr17	13007697	13007897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013671)	promoter-TSS (NM_013671)	-42.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	8.73572697309003	8.88151509304472	8.79493296980041	8.69976046262897	8.828478008822	8.92348679714262	8.94194528673101	8.43738139594541	0.0250187243004379	0.881603822698175	0.955384724180766
Merged-chr3-97206673-4	chr3	97206552	97206752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029933, intron 9 of 9)	intron (NM_029933, intron 9 of 9)	20712.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	5.50888276151097	6.04987970632424	5.47880916513767	5.95589730824441	5.93308806771926	5.62751384039075	6.00054442002208	6.34802344948202	0.34397686927471	0.247073069697701	0.558168726560377
Merged-chr3-121723217-7	chr3	121723107	121723307	+	969.9892580000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010171)	promoter-TSS (NM_010171)	-330.0	NM_010171	14066.0	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	3.57348842686176	3.67753026491786	4.40125314506898	3.60591866254317	3.96689864425722	4.24851616073376	4.34329848630556	4.07283341774102	0.815888254204695	0.100559847175938	0.348111460691156
Merged-chr17-84293363-4	chr17	84293284	84293484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 29 of 37)	intron (NM_183021, intron 29 of 37)	-105437.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	5.14636363338074	5.0529660643016	5.23992277995555	5.56409515950292	5.05654115877651	4.52023518384357	5.35346709230939	5.07799654037196	-0.449459199011899	0.205626664471825	0.509336732685136
Merged-chr14-64368423-3	chr14	64368322	64368522	+	700.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 1 of 4)	intron (NM_001253715, intron 1 of 4)	48534.0	NM_001253716	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	3.51714215107297	3.61366413087571	3.51761442169103	4.08805351812804	3.30953939558574	3.63369631481124	3.38963375392036	3.27328861830144	-1.05002209321316	0.0556778938642533	0.246952692383081
Merged-chr4-141658971-4	chr4	141658867	141659067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	5148.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	5.36216366445089	5.08769406490792	5.75185274107534	5.8055145254872	5.22285312117301	5.31041314805306	5.27471319303141	5.79146526819217	-0.220475244655008	0.506172065612174	0.771888853855569
Merged-chr1-92753891-3	chr1	92753790	92753990	+	978.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-77755.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	4.07583489831177	3.8181792431777	4.87046092938852	4.87031183410914	3.82437052992135	3.72648704769479	3.90117379495832	4.02301480036677	-1.58657593106137	0.00216680006287107	0.0248651521783469
Merged-chr7-129759982-4	chr7	129759897	129760097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	168134.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	6.23599636090073	5.66055457660036	6.30520159277381	6.27326606681414	5.87504023729989	5.58032820375813	5.4685728025071	5.84628285378181	-0.694075797278771	0.0144029443098593	0.101927537585153
Merged-chr6-88379040-4	chr6	88378938	88379138	+	893.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023060, intron 1 of 6)	intron (NM_023060, intron 1 of 6)	67501.0	NM_023060	65967.0	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|mSelB|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	4.81040674610901	3.95413804104851	4.71223564899914	4.9211678779651	4.19379407677869	4.12132283039187	4.29234413394146	4.52450058430057	-0.834175640151504	0.0619594324734448	0.263296145912079
Merged-chr10-77974551-4	chr10	77974451	77974651	+	979.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4099.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	5.07444940025458	5.0364826562481	4.70688088449099	5.11391954512075	4.94318579054153	5.0042771598452	5.17128927769305	4.825737529157	-0.0253061407489284	0.937890875638882	0.977460307804652
Merged-chr10-17294621-3	chr10	17294515	17294715	+	878.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-198833.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	3.24687535529064	3.24322762363569	3.52000021894686	3.35728789612313	3.20322570988958	3.23043980616338	3.552349544816	3.30492239446714	-0.0656584266252294	0.902290135502646	0.963741785300085
Merged-chr17-70991186-1	chr17	70991086	70991286	+	1000.0	f1_balb.idr	promoter-TSS (NM_023402)	promoter-TSS (NM_023402)	-670.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	2.96836317779291	3.22162488578853	3.3148030390407	2.61803115185083	2.93282327431758	3.08061041367368	3.02202493130638	3.26118390096789	0.0900584049981474	0.889474999155952	0.958560174490477
Merged-chr5-150892206-2	chr5	150892106	150892306	+	669.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34A1|LTR|ERV1	-60401.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	3.05478465573167	3.10464401878342	3.05515652720256	3.07005249851889	3.02600527077785	2.89274742943516	3.21225586862199	3.22359904387873	0.0948479942547301	0.867845015785478	0.95047283198973
Merged-chr8-123026192-4	chr8	123026140	123026340	+	886.1062619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	B1F|SINE|Alu	16044.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	3.70158109975655	3.46720189146423	3.58658586571179	3.86920977306248	3.83227286567851	3.92880570025247	4.02197942890663	4.03796737611012	0.785351846696369	0.0950722340608536	0.337378928518172
Merged-chr4-116822260-2	chr4	116822160	116822360	+	881.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146256)	promoter-TSS (NM_146256)	-752.0	NM_146256	242642.0	Mm.279897	NM_146256	ENSMUSG00000043155	Hpdl	A830048M07Rik|BC034099|Gloxd1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding	2.85905425318142	3.57561851563893	2.93247432242068	3.0154705425055	3.28091383151569	3.17912704285228	3.29021218705005	3.30189753960666	0.497122496364562	0.42082162227587	0.713573200847468
Merged-chr7-127118789-4	chr7	127118729	127118929	+	988.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133686, intron 1 of 3)	RSINE1|SINE|B4	3200.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	4.19221299805758	4.17174603736898	4.39430394538936	4.53908401492795	4.73242081704331	4.82105895349137	4.80370087114581	5.009469878757	1.06083020780358	0.00450643022287515	0.0439874672456367
Merged-chr9-22394958-4	chr9	22394851	22395051	+	815.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-5745.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	4.59823450367756	4.32608399464705	4.67565552339144	4.13767949935157	4.85269392845906	4.60634157674041	4.57741820748842	4.74473164575629	0.608769663376497	0.107084490088132	0.361017710414587
Merged-chr3-32409205-3	chr3	32409138	32409338	+	691.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26913.0	NM_008839	18706.0	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding	3.6816433220132	3.89784992731356	3.68221537602777	3.15987937292222	3.10561825815407	3.46964705436759	3.21119699062058	3.63051129921477	-0.875825056074621	0.136056809044235	0.410486305822995
Merged-chr1-80339710-1	chr1	80339610	80339810	+	580.0	f0_balb.idr	intron (NM_016716, intron 1 of 15)	intron (NM_016716, intron 1 of 15)	980.0	NM_001313728	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	3.720805194752	3.57408860012932	4.02740362698686	3.32997657362221	3.70669416948387	3.56299839291018	3.43405763949513	3.50440505863496	-0.369523734906066	0.485133051873338	0.759096185959383
Merged-chr10-125274555-3	chr10	125274464	125274664	+	851.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 3 of 5)	intron (NM_001358496, intron 3 of 5)	34252.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	3.76612373280529	3.71026214642438	3.95494185989246	4.239160834187	3.63138219779317	3.46677437414733	3.59124332397837	3.60280960741433	-1.13172791346255	0.0231180810896451	0.14083549245805
Merged-chr7-46839027-4	chr7	46838900	46839100	+	965.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6804.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	4.90983454847524	4.85895338047267	4.69521486273294	4.72040453297057	4.46810179709355	4.61494604031553	4.71147175686395	4.9073134975079	-0.246947478628225	0.477442516974953	0.753617106887338
Merged-chr2-181523006-3	chr2	181522903	181523103	+	759.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271584, intron 2 of 5)	B2_Mm2|SINE|B2	2518.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	3.50781379090128	3.42167078533851	3.26869933943968	2.8782399129656	3.4700365178862	3.62745137839702	3.69379904196059	3.75440792166604	1.21410575237874	0.02950414618784	0.165394510289893
Merged-chr6-113749267-4	chr6	113749135	113749335	+	924.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 19 of 19)	intron (NM_001036684, intron 19 of 19)	-8554.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	4.0711143992876	3.6888489505629	3.66229929929436	4.10645679945429	3.79342522494544	3.71915620542834	4.09597513420894	4.19397364999273	0.151510143822506	0.751392494447518	0.902145552360104
Merged-chr7-83632440-2	chr7	83632363	83632563	+	984.0	f0_c57.idr|f1_balb.idr	intron (NM_023377, intron 1 of 5)	intron (NM_023377, intron 1 of 5)	446.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	4.39434450946193	4.13386294002712	4.35510922253907	4.30498450344458	4.24693604252623	4.04754384030896	4.29429904943427	4.03134697691132	-0.331473873958985	0.407725943003277	0.703911157055426
Merged-chr10-37139351-4	chr10	37139240	37139440	+	899.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008538)	promoter-TSS (NM_008538)	-414.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	3.89119561189459	4.17940511029741	4.24320160842018	3.9122037014738	4.34757368461097	4.61382464381567	4.30817578647129	3.94579500601366	0.662670134097551	0.120885695629739	0.385007066500925
Merged-chr12-85575030-4	chr12	85574938	85575138	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-24067.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	4.10781425074943	4.52607317054795	4.10838357341701	4.84267410205028	4.26870499496145	4.61395452024899	4.57790439504176	4.43908375764452	0.0472420804016104	0.913305235183381	0.967512811762258
Merged-chr5-147431163-4	chr5	147431081	147431281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 1 of 18)	CpG	1025.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	6.1655904842854	6.04943798069898	6.06296303520609	5.83280707985889	6.26460453651109	6.640162915821	6.03194102078565	6.27632436289011	0.455544647775627	0.0677903235408882	0.277838185299054
Merged-chr1-134063725-8	chr1	134063612	134063812	+	957.4874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15443.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	4.33672307068708	4.24739455353498	4.08046402263036	3.59720843333312	3.9892224242919	3.88183634492955	4.19602482298874	4.21272983189068	-0.02250794585899	0.961885737730189	0.986301121135992
Merged-chr7-80215532-2	chr7	80215432	80215632	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 3 of 13)	intron (NM_001360135, intron 3 of 13)	17091.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	2.97891213440216	3.05715454179763	3.10578294404338	3.08939400791291	3.22636412573216	3.3324238976777	3.20900700717239	3.16333869255662	0.670550198400982	0.218472045332916	0.525781862908224
Merged-chr10-51459780-4	chr10	51459645	51459845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20867.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	6.38571965790893	6.6072902273761	6.36915851474329	6.27813830319393	6.34374911259024	6.47181541340514	6.186151157639	6.2722867041758	-0.130848321935526	0.560537167550532	0.80456182516632
Merged-chr4-137724962-4	chr4	137724855	137725055	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081155, intron 19 of 24)	intron (NM_001081155, intron 19 of 24)	494.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	5.46690077817593	5.8863690869094	5.49837112464636	5.59079465026103	6.4003266716929	5.22056698197828	5.98195902073809	6.06752478355323	0.602324577060797	0.0651141080315756	0.271530675234608
Merged-chr12-85339453-4	chr12	85339366	85339566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145138)	promoter-TSS (NM_145138)	-104.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	6.90004462187239	6.8850016928972	6.68196038806388	6.21085067187597	6.56565718481629	6.82801243126372	6.69182151269239	6.58399758548277	-0.0219533000828456	0.928667829874797	0.974091893381396
Merged-chr3-92150833-4	chr3	92150715	92150915	+	867.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8061.0	NM_027042	69332.0	Mm.120271	NM_027042	ENSMUSG00000027927	Lelp1	1700012F11Rik	late cornified envelope-like proline-rich 1	protein-coding	3.81120129987459	4.0060852195645	3.8116932004945	3.96026953742165	4.44237286281713	4.55629484908841	4.28804815787022	4.30532031651926	1.23976692061858	0.00236132463491225	0.0265649954462493
Merged-chr18-60209266-4	chr18	60209183	60209383	+	877.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-2794.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	4.45748870612192	4.19016234433957	4.61270578720301	3.91456980331525	4.57932730490251	4.36329349489089	4.30930895487372	4.71401331378685	0.467671843707799	0.264561679518743	0.576566406596513
Merged-chr7-100372696-1	chr7	100372596	100372796	+	627.0	f0_balb.idr	promoter-TSS (NM_028292)	promoter-TSS (NM_028292)	463.0	NM_001017985	277939.0	Mm.276374	NM_001017985	ENSMUSG00000047248	C2cd3	AU020772	C2 calcium-dependent domain containing 3	protein-coding	3.3818521376181	3.6350520255482	3.06877093133596	3.16391382288269	3.43279071665762	3.43908355888071	3.47469611740286	3.26398087845721	0.272398518082725	0.620743750520059	0.837466961433448
Merged-chr10-10459783-3	chr10	10459700	10459900	+	763.1777950000001	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	MamRep38|DNA|hAT	12514.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	3.92311326603851	3.7254110970463	3.76763842984406	3.68109398155923	4.07878583016	3.77138639472205	4.08717418114362	4.18537162952544	0.764522419443722	0.0803454735429503	0.307286575751634
Merged-chr17-17585318-4	chr17	17585221	17585421	+	910.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	39168.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	5.1020305726799	4.43487351805863	4.34719179101864	4.53088785531228	4.48184683570088	4.27345294086172	4.75760246349907	4.08703073571514	-0.462196181476723	0.28366226978851	0.595728620128502
Merged-chr18-35730490-4	chr18	35730386	35730586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033168, exon 2 of 2)	3' UTR (NM_001033168, exon 2 of 2)	3497.0	NM_001033168	73449.0	Mm.379225	NM_001033168	ENSMUSG00000073598	1700066B19Rik	SMIM33	RIKEN cDNA 1700066B19 gene	protein-coding	6.98020858836978	6.86083559145959	7.00713057609852	7.35229303129462	6.96590216882131	6.93269713134335	7.50084062964188	7.27525969022104	0.153104671976716	0.502040025138624	0.769457185302407
Merged-chr11-106153696-4	chr11	106153612	106153812	+	988.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 15 of 15)	intron (NM_011947, intron 15 of 15)	6215.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	5.53360368328341	5.61892241891817	5.69265608367726	5.90292228994119	5.74585397448895	5.24926630310175	5.7120911670635	5.663639654494	-0.155184175076828	0.582052042862124	0.816501953640427
Merged-chr11-77604539-4	chr11	77604448	77604648	+	868.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144825, intron 1 of 19)	intron (NM_144825, intron 1 of 19)	3267.0	NM_144825	216965.0	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	3.98127030186078	4.00747994954021	3.48109369431335	3.27347285890258	4.06870022769064	3.79070644095137	4.13477386868792	4.02476205393484	0.825667113399377	0.10880568453857	0.364112826505448
Merged-chr6-113075498-4	chr6	113075386	113075586	+	687.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027009, intron 1 of 1)	intron (NR_027009, intron 1 of 1)	1758.0	NR_027010	14910.0	Mm.280950	NR_027008	ENSMUSG00000086429	Gt(ROSA)26Sor	AV258896|Gtrgeo26|Gtrosa26|R26|ROSA26|Thumpd3as1	gene trap ROSA 26, Philippe Soriano	ncRNA	3.84038069318258	3.6410472469887	3.31778317453126	3.41724111387733	3.63460194584487	4.10167505241312	3.87052092803539	3.83859196688712	0.911797214608551	0.0656373544614111	0.272782648208898
Merged-chr1-98591228-3	chr1	98591118	98591318	+	703.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAP1-MM_I-int|LTR|ERVK	170094.0	NM_027584	70866.0	Mm.389164	NM_027584	ENSMUSG00000026336	Slco6d1	4921511I05Rik	solute carrier organic anion transporter family, member 6d1	protein-coding	3.05055222225038	3.48425826089923	3.10683612276749	3.05146287468764	2.64025998727307	2.59857815148027	2.79127994360178	2.6536394099576	-2.59431343708502	0.000479010606630883	0.00746725711112125
Merged-chr3-87526437-4	chr3	87526350	87526550	+	943.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286844, intron 1 of 4)	intron (NM_001286844, intron 1 of 4)	872.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	4.90006771227365	4.85496080262326	4.96688373464846	4.91992552219699	4.92826979119507	4.543153199384	4.29131230554864	4.82800437494384	-0.46823145990441	0.196183916982841	0.497193442530857
Merged-chr8-33652451-4	chr8	33652309	33652509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010344)	promoter-TSS (NM_010344)	-829.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	5.91216829590405	5.88838968405634	6.60709520225248	5.93228787604578	6.48907586593193	6.3182443108682	6.58748594703478	6.38253552009139	0.510510662554914	0.0525718735902963	0.238907833127989
Merged-chr12-73286811-4	chr12	73286721	73286921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029580)	promoter-TSS (NM_029580)	-27.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	7.91254500857949	8.19132911768001	7.81710686285837	7.91691246698525	7.94221063528915	7.97118904187701	7.81727033879232	7.82719558849668	-0.0983145325781357	0.564049202125456	0.806570732819143
Merged-chr18-56707710-4	chr18	56707604	56707804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010721)	promoter-TSS (NM_010721)	-109.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	7.49328315344731	7.45091088830285	7.9113047186395	7.75521069379563	7.82489964597626	7.92557703259206	7.88693013699261	7.63558704611401	0.200667557317736	0.284053671001093	0.596035490823689
Merged-chr6-28136079-4	chr6	28135963	28136163	+	824.104126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361125)	promoter-TSS (NM_001361125)	-917.0	NM_001361125	14823.0	Mm.320732	NM_008174	ENSMUSG00000024211	Grm8	A230002O04|GluR8|Gprc1h|mGluR8	glutamate receptor, metabotropic 8	protein-coding	4.23949733457841	4.10740191912501	4.14667957214814	4.38570862153868	4.01247731884404	4.22242576896518	4.30756700292652	4.55427407968867	0.11570851111781	0.779208897118765	0.913841690258744
Merged-chr14-121865281-4	chr14	121865108	121865308	+	815.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F3|LINE|L1	13062.0	NR_131002	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	3.07047331667208	2.95171010524004	3.07092282842034	2.77816738433476	2.56623745150541	2.87385576826593	2.75724344608584	2.95571956139659	-0.81044359791734	0.214592013006339	0.520477217220778
Merged-chr4-150898898-4	chr4	150898790	150898990	+	950.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020569, intron 6 of 6)	intron (NM_020569, intron 6 of 6)	11031.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	4.39228632202519	4.37871968025416	4.48595223667839	4.5133713346844	4.83929902272144	4.90288246042296	5.05864962187143	4.72759790445626	0.924631358770174	0.00724480789853441	0.0624458926386269
Merged-chr17-35821655-4	chr17	35821580	35821780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133662)	promoter-TSS (NM_133662)	-33.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	7.93316269586965	8.43328067841313	8.03145081620055	7.22222973030526	8.31479499199004	8.53602928262132	8.19509308312315	7.69206284684627	0.317092457161281	0.240333679502625	0.550870712287303
Merged-chr17-21650602-4	chr17	21650501	21650701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166497)	promoter-TSS (NM_001166497)	-10.0	NM_001166497	73229.0	Mm.296733	NM_001166497	ENSMUSG00000035868	Zfp983	3110052M02Rik|mszf57|mszf71	zinc finger protein 983	protein-coding	7.76766265523515	7.96125953727839	7.54965719466858	7.47233040604196	8.11003368744687	8.14006440033933	8.33607333836833	8.03714795234796	0.599530759347405	0.0012653899798123	0.0162462470009126
Merged-chr19-25002308-3	chr19	25002193	25002393	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 1 of 47)	MTE2a|LTR|ERVL-MaLR	2764.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	4.71856920576576	4.50274010665632	5.13175525567474	5.10638818146544	3.92030910990591	4.11876670920725	4.14235177290042	3.92552671639871	-2.10309881192697	8.40497692309343e-07	2.99128926204434e-05
Merged-chr1-105748532-3	chr1	105748429	105748629	+	723.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173187, intron 26 of 28)	intron (NM_173187, intron 26 of 28)	-32194.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	3.89800590217538	3.56470925863785	3.75811776829865	3.27723499578225	3.71472935421007	3.77429542729592	3.5861269983328	3.70544188376221	0.203736330255808	0.687554732315716	0.872378699555673
Merged-chr7-128312855-4	chr7	128312760	128312960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-14729.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	5.54907658300043	5.6145622286555	5.34998994436727	5.34340583392144	5.25458524764246	5.5560753383481	5.54803973804588	5.69534070527872	0.0876423999302929	0.758355684845684	0.905110823495606
Merged-chr2-170119441-4	chr2	170119345	170119545	+	819.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159683, exon 3 of 7)	exon (NM_001159683, exon 3 of 7)	11775.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	4.50780587089491	4.48774779446584	4.3324323180842	4.12315494157375	4.83996336684854	4.93757330473317	4.64081580057089	3.9520789734878	0.628942313257686	0.145938235444632	0.425830079002702
Merged-chr14-18893843-3	chr14	18893744	18893944	+	995.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360328)	promoter-TSS (NM_001360328)	-73.0	NM_144839	218793.0	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding	4.58201098382731	4.79398488932198	4.41794851117526	5.22880605221923	4.00582443738901	4.13705165082391	4.35357499248408	4.22667479265977	-1.46410855199177	0.000572943402380297	0.00861096673100236
Merged-chr19-56701048-1	chr19	56700948	56701148	+	810.0	f0_balb.idr	Intergenic	Intergenic	-21324.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	3.62929102409706	3.11431721801099	3.2186112987822	3.50044516456488	3.36030131590501	3.05915466151745	3.08184195931552	3.38700876310219	-0.540053450494666	0.354969456858466	0.661579026385505
Merged-chr17-3273907-3	chr17	3273858	3274058	+	688.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52615.0	NM_001122998	24001.0	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	2.95761829796135	3.3527475462466	2.95786284849489	3.27191241413791	3.95188982746435	3.48827187361539	3.5744481777241	3.81709402705142	1.9106308554983	0.0017791548895563	0.0213645844073385
Merged-chr9-71189238-4	chr9	71189143	71189343	+	866.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110517, intron 5 of 5)	intron (NR_110517, intron 5 of 5)	20467.0	NR_110517	102635087.0	Mm.444536	NR_110517	ENSMUSG00000111429	Gm32511	-	predicted gene, 32511	ncRNA	4.12907387785099	4.33932894517092	4.07995530422322	3.80859135476003	4.32966130268452	4.39625114219568	4.3329717953227	4.35033427242139	0.656321250460472	0.107960863963062	0.362559597364667
Merged-chr8-26687802-4	chr8	26687706	26687906	+	791.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136617.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	4.00060037914999	3.57795241371025	3.71618116842085	3.56051815924317	3.84549271564959	3.83564819918831	3.53317793868406	3.91072851089494	0.223772177169437	0.640586879259885	0.848234068144109
Merged-chr18-55209204-4	chr18	55209093	55209293	+	966.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-216602.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	5.09680943005899	4.64054512799539	4.81152944356045	5.32786394267116	5.20836393517908	5.20498805554075	4.9735955019123	4.95925030232091	0.149911966565619	0.668069681241947	0.862837936034118
Merged-chr5-121848257-4	chr5	121848168	121848368	+	811.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359949)	promoter-TSS (NM_001359949)	-729.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	4.21395930722673	4.62459188913086	4.42804420786672	4.27413636188024	3.95074743083028	4.24307515996347	4.24150079266942	4.25762526056986	-0.55460867287139	0.174232529363818	0.46855437538111
Merged-chr8-83622411-4	chr8	83622226	83622426	+	826.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13778.0	NM_001308227	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	3.59694866357748	3.62858911978415	4.10439445205132	3.51908560177733	3.24201414128922	3.21183161113504	3.29608728979196	3.42934571161816	-1.48204525954946	0.0076018885492924	0.0647707475520809
Merged-chr11-107405803-4	chr11	107405699	107405899	+	974.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	RSINE1|SINE|B4	64921.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	5.93395937059554	5.18834838463206	6.03842811176326	6.47629171186032	5.57734890977958	5.18166021609219	5.7201504399551	6.09219779939412	-0.505434742438285	0.170371260162903	0.463556181168789
Merged-chr15-78879321-4	chr15	78879219	78879419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145929, intron 1 of 16)	intron (NM_145929, intron 1 of 16)	2129.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	6.75064754118696	6.64641588773185	6.55107143199146	6.4826042156931	6.93147757443967	6.83950351434306	6.56664868859122	6.86923959534808	0.300873380307098	0.150832053692093	0.433763272180902
Merged-chr6-97788748-4	chr6	97788654	97788854	+	876.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A|LTR|ERVL	-18304.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	4.4371344524405	4.13668622740017	4.39901648844495	4.31942080814958	4.00396543160837	4.2124810974169	4.07056912273299	4.27204002809861	-0.470430108806406	0.240885416677209	0.551459638288532
Merged-chr5-36549414-4	chr5	36549326	36549526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	-18803.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	6.66576769541225	6.61216433015082	6.88903337371398	7.33550249543974	6.30115992180116	6.28337260614341	6.55490296193694	6.70690544203111	-0.649856510722572	0.0113084404906189	0.0861106202565185
Merged-chr9-90447070-4	chr9	90446935	90447135	+	682.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-176266.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	2.77368739741515	3.02698376902858	2.77395501710799	2.70241485641454	3.16255303113018	3.14580978233509	3.08008382102184	3.14597694819604	1.34479380870899	0.0227188040940442	0.139249268630842
Merged-chr15-76350637-4	chr15	76350506	76350706	+	965.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164608)	promoter-TSS (NM_001164608)	504.0	NM_025340	106025.0	Mm.41463	NM_025340	ENSMUSG00000022552	Sharpin	0610041B22Rik|AW121341|RBCKL1|SIPL1|cpdm	SHANK-associated RH domain interacting protein	protein-coding	5.23608744955742	5.63023017848691	5.5965932559344	5.0490845843922	5.318513681055	5.27987797297487	4.84713634337836	5.5435965066475	-0.213239147000352	0.526695449879501	0.783895717785684
Merged-chr2-31446243-4	chr2	31446136	31446336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24034.0	NM_007494	11898.0	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	5.20639615028648	5.56120577759075	5.03142914022716	4.73195125798955	5.68355102506809	5.38378635035092	5.59528146879206	5.35823084259463	0.64772619552301	0.0510062934496578	0.23433660113943
Merged-chr13-56611970-4	chr13	56611875	56612075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 1 of 16)	intron (NR_155548, intron 1 of 16)	2389.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	7.27450779860523	7.70619120464387	7.30771416340787	7.47128592056123	7.38130558458066	7.40912590287769	7.23945202453868	7.10984704962492	-0.21958531826166	0.260302982214104	0.572058715521924
Merged-chr17-69179378-4	chr17	69179276	69179476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	CT-rich|Low_complexity|Low_complexity	20020.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	6.01186902219614	5.72774407198874	6.01293410500355	5.54533539491887	6.11957028396489	5.72956058099859	5.78554951031151	5.6048918743132	0.0229418017349419	0.935342220404516	0.976553886506881
Merged-chr14-22817530-3	chr14	22817448	22817648	+	937.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-274750.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	4.00977253235717	4.41199054407925	4.18741200454773	3.8429890884721	3.63260748029292	3.86962625677085	4.03889372011659	3.68720731844285	-0.868898445081244	0.0669447999426046	0.275989057001499
Merged-chr10-130314296-4	chr10	130314172	130314372	+	902.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8580.0	NM_183264	67596.0	Mm.131264	NM_183264	ENSMUSG00000034833	Tespa1	5830405N20Rik|A430001F24Rik|AI450549	thymocyte expressed, positive selection associated 1	protein-coding	5.12725478057551	4.38034010351237	4.77399452348894	5.32652781582792	4.41940338271412	4.5687979611289	4.7137768056703	4.61299054431751	-0.804817694057789	0.0442076136559329	0.214466584815679
Merged-chr1-105092783-4	chr1	105092716	105092916	+	702.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-263191.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	3.44468003455816	3.38586408774338	3.38466825262814	3.65742798716145	3.85705575575784	3.61756618746694	3.7891252001159	3.66183750051398	0.792955323780723	0.1098701382057	0.366057225582454
Merged-chr11-98836808-4	chr11	98836720	98836920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080925)	promoter-TSS (NM_001080925)	35.0	NM_001080925	268480.0	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	6.11784293936531	6.35580422553398	5.9535353300707	5.78210808799331	5.87423278609668	5.68875427277203	5.62762006931627	6.0752226628626	-0.365957245189376	0.182959658088629	0.479787993334949
Merged-chr2-58533518-4	chr2	58533386	58533586	+	941.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110204, intron 2 of 12)	intron (NM_001110204, intron 2 of 12)	27924.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	4.05088357417063	3.76049167393186	4.17617795005104	3.87356270945427	4.04650319996363	3.63441422730566	3.74315494223045	3.80949251742013	-0.393133309985296	0.400318481298381	0.698147846003575
Merged-chr12-70129293-1	chr12	70129193	70129393	+	696.0	f0_balb.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-17258.0	NR_104397	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	3.30606231930465	3.38036418660556	3.41711880399325	3.25375374980622	3.23660153207338	3.29635202029405	3.34999246610469	3.41519712091563	-0.0436645956280218	0.932829556087811	0.975793592075455
Merged-chr4-148085365-4	chr4	148085285	148085485	+	894.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301281, intron 1 of 4)	intron (NM_001301281, intron 1 of 4)	2679.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	3.97785912018587	4.25864417395477	4.69926189063329	4.67883557839523	4.29569268580189	4.10264701467112	4.26228013413369	4.23278307876053	-0.52567171599614	0.220959079352933	0.529040790359911
Merged-chr2-165408014-4	chr2	165407916	165408116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054055, intron 12 of 12)	intron (NM_054055, intron 12 of 12)	-7622.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	4.97395630457293	5.41352787485188	5.14596641392387	5.11521327052436	5.45454479773016	5.28730616584253	4.91416811740692	4.68651853246063	-0.0746967111212184	0.830486302044537	0.93499882818844
Merged-chr12-51729229-3	chr12	51729133	51729333	+	883.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 4 of 5)	intron (NM_001329698, intron 4 of 5)	-37319.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	3.24790980671953	3.52877143461566	3.69448956768446	3.48546173235276	2.83054151672524	3.09868963932775	2.90590373643957	3.24660977659421	-1.92157337689177	0.00215288564533839	0.0247560981178581
Merged-chr2-122349104-2	chr2	122349006	122349206	+	978.5	f0_c57.idr|f1_c57bl6.idr	3' UTR (NM_001013829, exon 6 of 6)	3' UTR (NM_001013829, exon 6 of 6)	19812.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	3.95934635705064	4.06625559410852	4.17937551085414	3.64805404586052	3.40035572978452	3.69319887738349	3.94247494637837	4.17658413520261	-0.391649777146938	0.44564936920742	0.731620648357011
Merged-chr7-49764195-4	chr7	49764130	49764330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146053, intron 3 of 5)	intron (NM_001146053, intron 3 of 5)	4718.0	NM_001146052	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	5.40514759817353	5.48370574839794	5.73111319974271	6.17293811283602	5.55932888741031	5.4215703376298	5.52384209168675	5.62777360625917	-0.374103396813047	0.225903868985236	0.534540927024594
Merged-chr3-51560751-4	chr3	51560633	51560833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080793)	promoter-TSS (NM_080793)	90.0	NM_080793	73251.0	Mm.192111	NM_080793	ENSMUSG00000037111	Setd7	1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717	SET domain containing (lysine methyltransferase) 7	protein-coding	5.40439039244128	5.28317792759027	5.61789461171048	5.19980731825981	5.63507162598335	5.21960549130702	5.19313509563001	5.7523876998226	0.189866505334427	0.53791247070241	0.79126455418755
Merged-chr13-14064402-2	chr13	14064302	14064502	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331176)	promoter-TSS (NM_001331176)	618.0	NM_198122	94246.0	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	4.75207827648571	4.58258721387475	5.0323563484455	4.64859283045934	5.02034059402523	4.88836112330132	4.87666852113182	4.93129009228973	0.370540601145177	0.265362909671489	0.577001515467012
Merged-chr9-121265577-3	chr9	121265475	121265675	+	990.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177589, intron 4 of 36)	intron (NM_177589, intron 4 of 36)	11597.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	4.61697627014836	4.37932522553955	4.54314930085981	4.96076659058459	4.25033089723745	4.03755850869899	4.52164010896762	3.91046322344954	-1.05623862833736	0.0142987749353292	0.101392844152805
Merged-chr12-99563615-4	chr12	99563517	99563717	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_136760)	promoter-TSS (NR_136760)	-224.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	4.71134552718523	4.91304714199651	4.79040866414667	4.52299229225883	4.89270630052937	4.84740310479686	5.18088053319349	4.8609452362728	0.455883962512033	0.177033377857499	0.472289587325445
Merged-chr2-26360143-4	chr2	26360050	26360250	+	955.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037747)	promoter-TSS (NM_001037747)	-603.0	NM_001037747	332579.0	Mm.330064	NM_001037747	ENSMUSG00000026928	Card9	Gm782	caspase recruitment domain family, member 9	protein-coding	4.73230202322986	4.93282616464627	4.52948582128399	4.7995283288359	4.71767920859565	4.61497058620196	4.71089438759929	4.83828036121156	-0.084022244556372	0.805988550500426	0.925320965969831
Merged-chr16-55754048-4	chr16	55753960	55754160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68078.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	4.829101990266	5.35696268225713	5.44537071318921	5.05134021823392	5.50312901612293	5.4761675652812	5.52130044200073	5.35742933997182	0.505319491077522	0.0958531938260632	0.339118966317678
Merged-chr10-53348577-4	chr10	53348540	53348740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001204983, exon 3 of 13)	exon (NM_001204983, exon 3 of 13)	10954.0	NM_001141927	18821.0	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	4.68489108360486	4.58164807128003	4.72322592202928	4.55829830301313	4.6178386963262	4.25037788356533	5.02209270912344	4.75652274682083	0.127203679298974	0.733481605786643	0.894501717066228
Merged-chr4-120054329-4	chr4	120054240	120054440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-106866.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	5.94245739495492	5.89743981765952	5.92049238567174	6.09938785381313	6.16630862289306	5.87073845880839	5.93569857229769	6.36095935735868	0.196349929280634	0.431835205298221	0.721926614973461
Merged-chr15-90680160-4	chr15	90680054	90680254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025815)	promoter-TSS (NM_025815)	-766.0	NM_001357979	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	6.31106577798713	6.46734840352001	5.94761749074524	6.00218196304241	6.30158035726279	5.9233518555564	6.18919923950694	6.09748817630624	-0.0779464295415632	0.760165534304614	0.905949310444004
Merged-chr3-51339820-4	chr3	51339721	51339921	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	CpG	823.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	4.36199858146233	4.37133802166193	4.40709204882292	4.3141384093091	4.41214190627393	4.24215579394493	4.47075718065863	5.01438281616686	0.469612262632853	0.236497412619271	0.546570557203369
Merged-chr8-82383492-4	chr8	82383406	82383606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	19080.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	7.15772954070129	7.31636126805592	7.49890546248748	7.27223665422549	6.8921993483668	7.0493617847883	6.8914516434437	6.37635095737268	-0.673123669184802	0.00201138431041952	0.0234903682883811
Merged-chr5-136151730-4	chr5	136151636	136151836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178751, intron 2 of 2)	intron (NM_178751, intron 2 of 2)	12955.0	NM_028070	72041.0	Mm.294725	NM_028070	ENSMUSG00000039754	Alkbh4	2010004B12Rik|Abj4	alkB homolog 4, lysine demethylase	protein-coding	5.60721779170412	6.29924373413774	5.97130342372776	5.82867259046271	5.5105914050542	5.81292675680862	5.73683926443013	5.76203614536006	-0.403566637270006	0.148650433795991	0.430515898082144
Merged-chr13-60722893-4	chr13	60722792	60722992	+	964.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 10 of 26)	intron (NM_134062, intron 10 of 26)	63472.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	5.51568708946913	5.47534241885798	5.35359082018067	5.66976029205534	4.89217530959568	4.91675799141883	5.26789895283349	5.32052728389967	-0.75032887268574	0.0141694986132241	0.100776453016655
Merged-chr10-125273820-3	chr10	125273747	125273947	+	864.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 3 of 5)	intron (NM_001358496, intron 3 of 5)	34969.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	4.10275605690003	3.45137074686625	3.79022046454583	4.09072920149092	3.84062898823086	3.558989214659	3.77455342937146	3.62622571054272	-0.530358199223443	0.295292086128066	0.607360011623083
Merged-chr8-45337140-4	chr8	45337028	45337228	+	814.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153535, exon 14 of 14)	3' UTR (NM_153535, exon 14 of 14)	-3932.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	4.19877462384839	4.06515080788816	4.19942329447075	4.21827749450429	4.11426155943345	4.02980884602224	3.83794746231615	4.23942712890466	-0.279796296684581	0.499688075228898	0.768441125779794
Merged-chr16-44123529-4	chr16	44123430	44123630	+	819.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	15729.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	4.08941963899054	4.16496535108558	4.1830391517595	4.04263470839064	4.47269637528947	4.30791964706848	4.16468466524501	3.82518047152013	0.274205650538479	0.519861215057594	0.78036882925248
Merged-chr7-44553500-4	chr7	44553387	44553587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009473, intron 2 of 9)	intron (NM_009473, intron 2 of 9)	478.0	NM_009473	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	6.47661415210388	6.87517846049673	6.65666860640686	6.50108119637346	6.86730444589827	6.56488549116687	6.84344954529306	6.30532059662731	0.0563163520945571	0.811313014697991	0.926950255422823
Merged-chr8-72324494-9	chr8	72324304	72324504	+	873.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	5342.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	3.84033220933149	3.64079146513932	3.43028989247998	3.51798366998595	3.55539275504547	3.60494026056807	3.41811140469603	3.64995207487508	-0.165124337665587	0.738027877157066	0.896580162228794
Merged-chr18-75820215-4	chr18	75820104	75820304	+	954.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145356)	promoter-TSS (NM_145356)	26.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	4.82804942090158	5.23150448593561	4.9467431511318	5.4383000235879	5.216823803522	4.83594512123277	5.36008436491496	5.27259249013591	0.0636425320206491	0.851992038323987	0.94421936565126
Merged-chr2-131427160-4	chr2	131427063	131427263	+	974.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-64699.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	5.85247568728803	5.59019067834629	4.82153373819908	5.11703204585547	5.27964897046951	5.26888903726794	4.66563496226724	5.15598928012335	-0.516598472807206	0.17655959581697	0.471696597404882
Merged-chr16-57422281-4	chr16	57422202	57422402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	69025.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.59776432524529	6.77518571858133	6.94286037471068	7.17562878794168	6.73630388265302	6.58194431589455	6.78999794828501	6.8335066295314	-0.235122258642496	0.289873633342482	0.601945471019989
Merged-chr8-116587806-4	chr8	116587716	116587916	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 4 of 6)	intron (NM_029441, intron 4 of 6)	82801.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	5.10033564337462	4.93170311930393	4.82981904633069	4.98754092206274	5.27453545808024	5.05497852302386	5.73768432109413	6.00630751460996	1.08619041917881	0.00155146123522481	0.0191987933348517
Merged-chr16-17891792-4	chr16	17891713	17891913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010048)	promoter-TSS (NM_010048)	-85.0	NM_001109750	13356.0	Mm.254515	NM_010048	ENSMUSG00000003166	Dgcr2	9930034O06Rik|DGS-C|Dgsc|Idd|Lan|Sez12|mKIAA0163	DiGeorge syndrome critical region gene 2	protein-coding	8.02570829002441	7.91601897060693	7.7125110229957	8.05025622801828	8.03473988993536	8.01938190104341	8.26054185522927	7.95366506522824	0.17217261120482	0.31816673550271	0.63005001767612
Merged-chr15-25826747-3	chr15	25826709	25826909	+	794.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B1|LTR|ERVL	-16489.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	2.78975157228999	2.58344449785291	2.91525979063267	2.60678877906918	2.80319004114872	3.08505741319668	2.96145497114621	2.85270001875177	0.93648013612215	0.136417372800825	0.41091739052877
Merged-chr9-44234211-4	chr9	44234124	44234324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007619)	promoter-TSS (NM_007619)	-178.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	7.95640926545821	8.05917511280988	7.34454742759098	7.64134452106267	8.00739066357239	8.16893583496377	8.0425496384545	7.52536111248279	0.231879343617564	0.300690292784987	0.612594720652087
Merged-chr11-115182553-4	chr11	115182517	115182717	+	887.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025400)	TTS (NM_025400)	4699.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	3.54739397528039	3.85794565646457	3.72788086877569	3.36050350922652	4.15140214935608	4.19770177096346	4.09471044945024	3.83349324498385	1.30053450678506	0.00529480394573567	0.0496517894679151
Merged-chr2-93462528-4	chr2	93462411	93462611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271461)	promoter-TSS (NM_001271461)	-9.0	NM_007656	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	7.78787090388277	7.59884510947028	7.94074022024943	7.61366906205262	7.93564639505908	7.80290314218059	7.88887784581327	7.37993477113146	0.0481023783877155	0.806790938829391	0.925518505591432
Merged-chr11-72490047-4	chr11	72489947	72490147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153060)	promoter-TSS (NM_153060)	-127.0	NM_153060	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	6.34273501954693	6.28544592028899	6.04726871448564	6.27259268090697	6.38501971423006	6.00850151436376	6.54982331509418	6.04295969136465	0.045511981441296	0.853039198246209	0.944678751070911
Merged-chr3-9901795-4	chr3	9901623	9901823	+	901.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68044.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	3.66618938168643	3.66388496225268	4.03307914123233	3.60084499286909	3.77521202393869	3.55035001680972	3.75271587819669	3.36859284448884	-0.358620921082851	0.476281522296083	0.752838598679729
Merged-chr11-97150633-4	chr11	97150574	97150774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198100)	promoter-TSS (NM_198100)	-962.0	NM_198100	73174.0	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	5.49469395919452	5.73094268021587	5.31594683588641	5.37072823710111	5.79492262099245	5.91851875236793	5.25848848729597	5.51956919459615	0.284854469361815	0.34094889618217	0.650069685024931
Merged-chr5-5415619-4	chr5	5415533	5415733	+	823.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35382.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	3.41234080093361	3.41193087405747	3.64581255155381	3.53230024750654	3.89567408075115	3.70914167324562	4.03349701493279	3.53253568807416	0.931552403668991	0.0553110635684027	0.245907944643057
Merged-chr3-58372615-3	chr3	58372492	58372692	+	892.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42128.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	3.40837475677396	3.85195972873869	3.7639140317263	3.79558991805889	3.18805180355656	3.3340627841592	3.21073130127208	3.21948524681384	-1.74304852356298	0.00154682665056201	0.0191447703286999
Merged-chr17-67317067-1	chr17	67316967	67317167	+	651.0	f0_balb.idr	intron (NM_001357625, intron 1 of 32)	MLT1E1A|LTR|ERVL-MaLR	37392.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	2.83753308905549	2.52317030317353	2.67236401724857	2.83168821294931	2.25970116400312	2.36082881810281	2.40519402131751	2.33699805287048	-2.46667461728808	0.00272804654193776	0.0296457442455859
Merged-chr15-53373966-4	chr15	53373859	53374059	+	988.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-27776.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	5.66769644301017	5.47084010022465	5.02065236235946	5.72948313356436	5.75860278464558	5.91753071881004	5.29288828637044	6.27641268236324	0.573979834222406	0.0886817762347563	0.32504802332069
Merged-chr11-51833630-4	chr11	51833539	51833739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 5 of 12)	MIRb|SINE|MIR	23842.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	6.29381879350419	7.21925659069988	6.29494301917024	5.53002034920414	6.97472827319775	7.16785766409825	6.95602872279412	6.36863357555561	0.583006028420573	0.273371646300248	0.584948757312652
Merged-chr8-4613111-4	chr8	4612983	4613183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145591)	promoter-TSS (NM_145591)	-87.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	7.99995895002767	7.87826764636849	8.1321674918609	8.47454942809411	8.13333165555838	8.0634288719173	8.41419238120271	7.86517136344879	-0.0190050473269048	0.926028243386808	0.972756955743805
Merged-chr18-33719378-1	chr18	33719278	33719478	+	679.666687	f0_c57.idr	Intergenic	Intergenic	-75514.0	NR_038152	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	2.44022705743014	2.38988454121188	2.44041366914876	2.33364403160712	3.23630974128337	2.99343303140291	3.24000236322423	3.10582120062333	4.1073262476269	1.3175037673807e-06	4.49346433437428e-05
Merged-chr11-3169188-3	chr11	3169074	3169274	+	987.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 7 of 32)	B1_Mus1|SINE|Alu	24289.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	4.64306034516502	3.94318744930301	4.07655899120265	4.26896838283313	3.60153651920619	3.77899967013649	3.37591714763499	3.65489937971052	-1.89130973996161	0.000215746129408328	0.00387206095440126
Merged-chr12-100026868-4	chr12	100026779	100026979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	62380.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	5.9155673789303	6.01288187402191	6.27607218008852	6.48474540035287	6.11616235915794	6.27468848721447	6.33223692502722	6.21517667728178	0.0327613941225497	0.896444984209665	0.961123944193462
Merged-chr8-59234646-3	chr8	59234547	59234747	+	989.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	322892.0	NM_173411	234290.0	Mm.39244	NM_173411	ENSMUSG00000049946	BC030500	-	cDNA sequence BC030500	protein-coding	4.58823167530775	3.8710945911012	4.58900455778175	4.60328668861584	4.03604707605572	4.08919882311991	4.45718551666142	4.12314358816105	-0.63837335847493	0.152556462949939	0.436763594091937
Merged-chr7-141025632-4	chr7	141025526	141025726	+	890.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42|LTR|ERVK	-8734.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	4.46422111041173	4.62554490193007	4.0861106489611	4.33036178120806	4.32126022981277	4.21347410078049	4.17368660679982	5.01631728263558	0.203803641796108	0.644223289534826	0.850114377563949
Merged-chr5-103911214-4	chr5	103911119	103911319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359986)	promoter-TSS (NM_001359986)	40.0	NM_001359987	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	6.85909217935351	6.90721742725468	6.83212917613692	6.89941924561371	7.03189485445802	7.18164948213236	7.25668125697253	7.15273559099234	0.381995916104654	0.040195171460203	0.20238042791015
Merged-chr6-125385816-4	chr6	125385721	125385921	+	978.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3b|LINE|CR1	-5317.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	5.75572369247782	6.24713374658332	5.41429795249574	4.72536732386776	6.03560311806938	6.26043885990345	5.93351183557039	5.98117721676383	0.651121660767635	0.0790134364142237	0.304168883419765
Merged-chr10-5191762-4	chr10	5191649	5191849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079686, intron 2 of 54)	intron (NM_001079686, intron 2 of 54)	2958.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	7.54371096252423	7.63098482077704	7.4098158011636	7.95940130745771	7.74232655455206	7.53551711553512	7.43264649577123	7.8321141686451	-0.0229597445303043	0.91012428734524	0.966671146059764
Merged-chr17-24172415-4	chr17	24172327	24172527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2749.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	6.0750145778441	6.18318595840625	5.65329769735789	5.29682604029279	6.97811471073939	6.90770386930924	6.78748409972772	6.77960420086554	1.54361490814437	1.41970320064901e-08	7.32799522255228e-07
Merged-chr7-49778346-4	chr7	49778237	49778437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133740)	promoter-TSS (NM_133740)	-21.0	NM_133740	71974.0	Mm.33202	NM_133740	ENSMUSG00000030505	Prmt3	2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3	protein arginine N-methyltransferase 3	protein-coding	7.81041240405726	8.01548793489504	7.63077490930235	8.02108831069247	7.69149179602973	7.84319739977301	7.81147880792166	7.87348893926939	-0.110305788491603	0.531935067977841	0.787748963171131
Merged-chr1-118459590-4	chr1	118459470	118459670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027901)	promoter-TSS (NR_027901)	-305.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	7.51153921128769	7.59313129723155	7.0920236845452	7.35837877066385	7.35032002439299	7.0582916185436	7.27843999890595	6.63797610517254	-0.386806862414091	0.0915106230957673	0.330540680063616
Merged-chr2-132631022-4	chr2	132630931	132631131	+	845.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033468, intron 4 of 5)	intron (NR_033468, intron 4 of 5)	32835.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	3.93760800630176	3.83125082183583	3.98815873380308	4.22864352871023	4.00018272210617	3.83735074226926	3.64242245702998	4.53301283513724	0.0948432061147897	0.847216461831719	0.9422142432572
Merged-chr16-75887378-4	chr16	75887259	75887459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 2 of 7)	MTE2b|LTR|ERVL-MaLR	21907.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	6.97634830116351	7.28519694862564	7.04033640836005	6.96232623318001	7.18443754930391	6.73242594795558	7.49305927733858	6.73237754651938	0.0151670717198629	0.94944144021808	0.981872090911877
Merged-chr3-38115010-3	chr3	38114934	38115134	+	727.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93085.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	3.63548006223996	3.65350979574043	3.84596407543016	3.76001263068235	3.93923015830128	3.86345897936547	3.9218828679937	3.68956683591565	0.388314510942295	0.387163840710504	0.688130369231529
Merged-chr11-40733546-4	chr11	40733430	40733630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013552)	promoter-TSS (NM_013552)	-93.0	NM_013552	15366.0	Mm.116997	NM_013552	ENSMUSG00000020330	Hmmr	AA386826|CD168|Rhamm	hyaluronan mediated motility receptor (RHAMM)	protein-coding	8.3463377011826	8.38083845688908	8.34220233191361	8.39501979444525	8.54475080237948	8.61010261267959	8.55545283417169	8.10842660099266	0.130712074429485	0.439616183271218	0.727425871224001
Merged-chr19-58943598-4	chr19	58943483	58943683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001327998)	promoter-TSS (NM_001327998)	89.0	NM_001327998	73442.0	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	6.31141925812037	6.72085410447052	6.80075641488212	6.29990504840678	6.29142832477645	6.37253203270035	6.03517442665646	6.03899251456285	-0.521780194543477	0.0372628400362398	0.192560744223865
Merged-chr13-34236949-4	chr13	34236858	34237058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	RSINE1|SINE|B4	73994.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	5.2630173004273	5.47224789475897	5.42431794831166	5.71582616222874	5.79031685803411	5.37398347291468	6.02150058128484	5.64135169968442	0.396399763689442	0.180983366598543	0.477401980844859
Merged-chr5-101994259-6	chr5	101994051	101994251	+	887.5166630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	75770.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.62914471052445	3.21743525918204	3.25021955861969	3.18986975302584	3.79644537188824	3.95836052710995	4.21286743194976	3.73341859002803	1.92365114369554	0.00015163243442917	0.00287891305687753
Merged-chr18-60523938-4	chr18	60523842	60524042	+	991.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2212.0	NM_026302	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	4.99975399532734	4.85689945704658	5.00060578659826	4.91311664222938	4.86498607845973	4.32989958786887	4.61921429757739	4.67837840009482	-0.600556114130442	0.0880113473066649	0.32365269415091
Merged-chr7-63925503-4	chr7	63925426	63925626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	8669.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	7.12631469894812	6.05094180435988	6.44504061186387	6.7321493551346	6.60844313192597	6.34755532796565	6.89153669072427	6.52631156220103	-0.0550840094868277	0.845461358821202	0.94153555929146
Merged-chr10-79889588-4	chr10	79889499	79889699	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1254.0	NM_001329541	11537.0	Mm.4407	NM_013459	ENSMUSG00000061780	Cfd	Adn|DF	complement factor D (adipsin)	protein-coding	4.99636069989497	5.02469909046137	4.65048411612834	5.2159867844158	5.01447948349169	4.82924541585967	4.7141766268341	5.23808990680151	-0.0709221277184352	0.838560816452511	0.9387708599746
Merged-chr6-108661680-4	chr6	108661588	108661788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104577)	promoter-TSS (NR_104577)	-754.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	6.08755419601926	6.0428687089231	5.91561195432765	5.9554886930459	6.16992276916888	5.97079526767763	6.05754970570581	5.88809962324162	0.0558281537195291	0.814210524576379	0.928322338276286
Merged-chr2-30591081-4	chr2	30590977	30591177	+	988.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-3967.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	5.60565467608414	5.06632168528112	4.88159264390392	5.36033257411387	5.52247671284321	5.57151571154197	5.25323205188905	5.42238359508267	0.33164844187985	0.293303729318923	0.605875232443865
Merged-chr14-73411115-4	chr14	73411006	73411206	+	926.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25817.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	4.47344327189765	5.04658791963673	4.89102880992105	4.67429596402967	4.63288271982701	4.24494042114176	4.40908844638954	4.7515806952207	-0.554598580577558	0.150023266693864	0.432433226694848
Merged-chr2-25194610-4	chr2	25194512	25194712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146115, exon 2 of 2)	exon (NM_146115, exon 2 of 2)	2201.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	5.96472213328156	6.13811527038214	5.7984406506219	5.95914093111378	6.29717166621305	6.07286344791143	5.86677768295049	6.08909125662789	0.198867221240339	0.420899442064841	0.713593114282418
Merged-chr3-60537266-4	chr3	60537156	60537356	+	985.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	36077.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	5.77452460455311	5.41362052486867	5.13008056120281	5.85794086117816	5.81930432316377	5.64014429388183	5.69954334710014	5.54543869678566	0.153174058623346	0.611803885642877	0.832569290540731
Merged-chr10-91188136-3	chr10	91188030	91188230	+	959.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16511.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	4.49215126763239	4.48250751666012	3.82542782189264	4.2226133255311	4.58870480503429	4.12391529598223	4.13619066255096	4.19897944578371	0.0154010297250777	0.972324913377116	0.990053526064604
Merged-chr6-50132846-3	chr6	50132744	50132944	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361248, intron 1 of 13)	intron (NM_001361248, intron 1 of 13)	21984.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	5.1285544165246	5.28838818630178	5.53085821094808	5.56929466235619	4.87090491012706	4.57287432447343	4.61471821094904	4.63271940663615	-1.3903819200637	4.20766461415104e-05	0.00097334208505251
Merged-chr1-93343606-4	chr1	93343518	93343718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023200)	promoter-TSS (NM_023200)	-27.0	NM_023200	66385.0	Mm.88704	NM_023200	ENSMUSG00000026275	Ppp1r7	2310014J01Rik|SDS22	protein phosphatase 1, regulatory (inhibitor) subunit 7	protein-coding	7.66019180240448	7.92190748874672	7.5363325256581	7.96625127321865	7.93106892189847	7.46578505053391	7.86964593500017	7.64771865465675	-0.0578933447490256	0.769445217072912	0.909742530773464
Merged-chr19-23045111-2	chr19	23045011	23045211	+	938.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96115.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	3.39429888882356	3.22949147227209	3.51064081052059	3.70488242015783	3.43430132273391	3.6816896698721	3.55059418417169	3.75925651438446	0.395149525868071	0.450288068347593	0.735233969144434
Merged-chr1-6624748-4	chr1	6624633	6624833	+	955.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001244693, intron 2 of 22)	MTD|LTR|ERVL-MaLR	-105318.0	NR_045189	240690.0	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	4.60701066904913	4.24664705165223	4.6502066249283	5.08070691017389	5.0169223942109	4.69763945667855	5.07731656495351	5.03947244891433	0.533779272263916	0.172359105147409	0.465715702284759
Merged-chr7-64011951-4	chr7	64011835	64012035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73020.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	7.42952657861663	7.42704241140147	7.47766052689177	7.67401833440548	7.18486480654969	7.31963668603449	7.05735499030905	7.41606968367621	-0.357247596115661	0.0567147613148212	0.249441578215656
Merged-chr7-83649011-3	chr7	83648944	83649144	+	953.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 15 of 18)	intron (NM_001360088, intron 15 of 18)	6451.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	4.1303788949669	3.7974736927407	4.32767845411133	4.41078181957936	3.85112865997259	3.59093008126604	3.82662344819767	4.12844848156173	-0.918823093780374	0.0565356544790323	0.249021187985562
Merged-chr10-4155741-3	chr10	4155640	4155840	+	719.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172308, exon 28 of 28)	3' UTR (NM_172308, exon 28 of 28)	57380.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	3.10046499825269	3.1970156603098	3.60797987505276	3.70080592663785	2.88123046224846	2.85668805271752	2.74194415160504	3.03573450127257	-2.378037624178	0.00058899765751925	0.0088131730638139
Merged-chr5-106696717-5	chr5	106696636	106696836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026856)	promoter-TSS (NM_026856)	94.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	6.89411484428304	6.87587058964727	7.03370889227724	6.90035188094568	6.85862502523051	6.79090675374928	7.11156130376099	6.76469142391959	-0.049624678369142	0.802102475592056	0.923727929039865
Merged-chr12-51768885-4	chr12	51768752	51768952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144788, exon 25 of 43)	exon (NM_144788, exon 25 of 43)	60684.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	5.49467862695676	5.38270529883988	5.44039254438539	5.90274411731454	5.53567841748261	5.26381240306616	5.35585470908506	5.04348057950513	-0.47168282209232	0.130942588645463	0.402847904555962
Merged-chr2-32775673-4	chr2	32775549	32775749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290567)	promoter-TSS (NM_001290567)	-16.0	NM_001290563	338348.0	Mm.475130	NM_177384	ENSMUSG00000039021	Ttc16	1200002K10Rik	tetratricopeptide repeat domain 16	protein-coding	7.55192336412586	7.36921295838825	7.08644029802738	7.00656859748156	7.23184361911718	7.3467923529507	7.24342917652768	7.2318358689091	0.000930789862669654	0.996355026622355	0.998602617451138
Merged-chr10-20773350-4	chr10	20773245	20773445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48267.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	5.76426980391897	5.36655243565589	5.62950862574938	6.2660073985031	6.13909042483752	5.8642114763057	5.94769527767348	6.55540235240417	0.526063998548891	0.101120568472003	0.349045193893055
Merged-chr19-46869683-4	chr19	46869588	46869788	+	982.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102471, intron 5 of 6)	intron (NM_001102471, intron 5 of 6)	92663.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	5.44926067900546	5.09483605219774	4.73677250709263	5.42732554084638	5.34614532914364	5.30069287902213	5.06701023380105	5.30927499027637	0.0755308147984315	0.819151352926838	0.930742663420535
Merged-chr8-70646107-4	chr8	70646073	70646273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023217)	TTS (NM_023217)	13565.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	6.50754951559886	6.62593269554428	6.83118941262814	6.60991553913331	7.40707163302165	7.25283426364056	7.2144262020895	7.28578228185328	0.901841473296667	2.55346889099307e-06	8.16869043559532e-05
Merged-chr17-36064776-1	chr17	36064676	36064876	+	688.400024	f0_balb.idr	Intergenic	Intergenic	-6405.0	NM_001199967	100529082.0	Mm.484641	NM_001199967	ENSMUSG00000079492	Gm11127	-	predicted gene 11127	protein-coding	3.2625214286703	3.21354951170637	3.21178329508645	3.47643600121328	2.59724404315581	2.81526765939324	2.62313453667873	2.706289485895	-3.38996262609777	2.8165763040142e-05	0.000687520866747006
Merged-chr2-11300568-4	chr2	11300470	11300670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008859, exon 18 of 18)	3' UTR (NM_008859, exon 18 of 18)	-38919.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	6.37947365487164	6.24768387641956	6.51154757877763	6.5033470103448	6.05766617855971	6.22231989176102	6.22110441770392	6.22926196523173	-0.365455651631238	0.102805574864878	0.35216269069915
Merged-chr4-133666362-3	chr4	133666243	133666443	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356466, intron 2 of 3)	B1_Mur3|SINE|Alu	6304.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	4.68161273966881	4.49730763373988	4.47019203708718	4.67051287744491	3.97098981958785	3.95966865728676	3.88222843755595	4.11449860811742	-1.52757019986357	0.000188613972011415	0.00346371360005172
Merged-chr7-135767673-4	chr7	135767571	135767771	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51292.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	4.92233769473121	4.88732075923382	5.05804788100064	4.90273130356867	5.18601719029376	4.90807645179792	4.89962639166308	4.84673123690034	0.0785787387900666	0.806125889902402	0.925358561244123
Merged-chr12-3291185-4	chr12	3291094	3291294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	ORR1B1|LTR|ERVL-MaLR	18775.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	5.40885966235121	5.68811788268886	5.43905889892761	5.28676356900217	5.31560335406222	5.82440217350143	5.76062012155838	5.18031190602572	0.145590294204738	0.636995778620726	0.846524944016069
Merged-chr12-83771072-3	chr12	83770972	83771172	+	787.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205343, intron 3 of 27)	intron (NM_001205343, intron 3 of 27)	7438.0	NM_130887	170721.0	Mm.133443	NM_130887	ENSMUSG00000021223	Papln	E030033C16Rik	papilin, proteoglycan-like sulfated glycoprotein	protein-coding	3.50510169098738	3.77235179929216	3.4463506092562	3.44356656121908	3.57030021608296	3.78688873818801	3.70278255769036	3.61446464246038	0.385732519175547	0.424460575973457	0.716177863206152
Merged-chr4-19697195-4	chr4	19697094	19697294	+	862.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_074090, intron 1 of 24)	intron (NR_074090, intron 1 of 24)	11810.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	4.16084110363857	3.81410027972124	4.06411348665773	4.19420687087105	4.35466870621119	4.46476290355733	4.39482344268952	4.11124760101045	0.650426749996958	0.113684145715978	0.372879730576495
Merged-chr5-117120853-2	chr5	117120753	117120953	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199685, intron 1 of 20)	intron (NM_001199685, intron 1 of 20)	724.0	NM_001199685	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	2.85226409771588	2.88383596743402	3.10093386212909	2.75182776004798	2.99089328207261	3.02871120288037	3.0315124363499	3.25806053538239	0.785605817366696	0.183938790172558	0.481128824317413
Merged-chr18-12237089-4	chr18	12236992	12237192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008720)	promoter-TSS (NM_008720)	-706.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	5.89214938507789	5.84993264162109	5.74799014000183	5.72311233571296	6.15573682660434	5.99810143838863	5.84026098904908	5.9557208237205	0.323485391309949	0.186598046487648	0.484625049457725
Merged-chr10-126919255-4	chr10	126919156	126919356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17885.0	NM_001358970	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	6.35080647525024	6.6795093010831	5.98597693076351	5.98602838980427	6.54417403427052	6.47348207536135	6.10962490699588	5.98170998383042	0.0381489320502653	0.892223967442405	0.959628855154721
Merged-chr1-93727148-3	chr1	93727058	93727258	+	702.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025920, intron 2 of 5)	intron (NM_025920, intron 2 of 5)	4768.0	NM_001310761	67026.0	Mm.272356	NM_025920	ENSMUSG00000026279	Thap4	2010320B01Rik	THAP domain containing 4	protein-coding	3.1282149536985	3.57881457287823	3.26211567687234	3.46112399199991	3.33875089154715	3.4978423425842	3.5816040432712	3.64297902054774	0.467851614184122	0.380380793502094	0.682812352787301
Merged-chr8-34101207-4	chr8	34101141	34101341	+	788.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293759, intron 2 of 7)	intron (NM_001293759, intron 2 of 7)	6573.0	NM_001293758	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	3.59728671629255	3.70272050550494	3.65350320880645	3.86009790080594	3.90387789562819	3.6547077443681	3.79163281702568	3.70491018216419	0.160848592975607	0.729894870928347	0.892804506157461
Merged-chr13-49097743-3	chr13	49097627	49097827	+	789.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 4 of 29)	intron (NM_001290313, intron 4 of 29)	50601.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	3.14050244499307	3.03711999960376	3.25899148155103	3.10525573305841	2.91959982747677	3.31448264546416	3.45121812197522	3.31232929028593	0.4671569126411	0.413533962851385	0.708462289086549
Merged-chr11-95869680-4	chr11	95869547	95869747	+	904.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008081, intron 7 of 10)	intron (NM_008081, intron 7 of 10)	10830.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	4.55210458802914	4.88253923805962	4.4649096027573	3.9153849316309	5.03446652835702	5.02596496876922	4.6899162519984	4.46207893973494	0.711369487675319	0.0965865792072534	0.340511942614814
Merged-chr19-43931113-3	chr19	43930997	43931197	+	919.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	9101.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	4.41687093382386	4.15206113570425	4.30334262418462	4.23520911379164	3.59454022953005	4.11238235958582	3.86641544658674	3.93375554380914	-1.08074131521749	0.0149763870466393	0.104715545539562
Merged-chr6-128838460-4	chr6	128838369	128838569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	4.5SRNA|scRNA|scRNA	-12154.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	5.28801175272746	5.31010159437905	5.1018495235441	4.98810274913379	5.19903357440748	5.24251135249336	5.07708166448657	5.13150641100904	-0.00256654231904958	0.993230804160935	0.99761124410218
Merged-chr2-45085814-4	chr2	45085697	45085897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	24480.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.70022301665991	8.17581027452107	7.6514088361869	7.44122239403015	7.86381834740735	7.91921010428684	7.50758104103304	7.41274406308885	-0.0941978136967913	0.677030135027946	0.867394047439347
Merged-chr19-12011089-4	chr19	12010965	12011165	+	936.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25675.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	4.76601353474741	5.07971327927049	4.48608753603117	4.53702767158929	4.47680579728471	4.57207476834883	4.50960903309757	4.86708011941448	-0.263180352871941	0.487452495814151	0.7608021313355
Merged-chr4-32147679-3	chr4	32147582	32147782	+	976.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	183575.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	4.73083130247236	4.47615686870018	5.68909421374871	5.24535714045596	3.74677051699428	3.9547962952662	4.12072880086568	4.1919987425339	-2.58879672052363	8.49434627239663e-08	3.68670166660317e-06
Merged-chr11-117881122-4	chr11	117881029	117881229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7603.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	6.00910359164472	5.68395441156289	6.29176481168829	6.48758362292651	5.63941597130134	5.54963580102373	5.6184056055011	6.02671978502526	-0.707654716655729	0.0167862082158768	0.113587367106939
Merged-chr3-88490845-4	chr3	88490779	88490979	+	796.575012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	2433.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	4.09402877276089	3.88734491398859	3.95743193827347	3.90595199764483	4.27895954591991	4.07884389252976	3.62058119025978	3.80180576840598	0.0604897820462951	0.896759131439596	0.961315956817708
Merged-chr5-88559346-3	chr5	88559253	88559453	+	804.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4891.0	NM_023054	65961.0	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl-1|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	3.74532474898304	3.78104110156965	3.74584355871234	3.66122670174172	4.1458871923004	3.56700041868906	3.78187916116962	3.89270319781929	0.42610327243185	0.362147880447228	0.667391362426295
Merged-chr11-103146592-4	chr11	103146512	103146712	+	927.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13253.0	NM_027658	71059.0	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	4.56689817729535	4.90847368092636	4.10986328288641	3.67070540616282	4.1340181906811	4.07806371957012	3.81918094689814	4.24895623428362	-0.777304617693488	0.131767249423676	0.404175330626236
Merged-chr7-31155558-4	chr7	31155456	31155656	+	902.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4385.0	NR_153431	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	4.69037346785121	4.48103382609758	4.75972281377233	4.02045794753406	4.56244549098144	4.50268709178026	4.21106911950426	4.4984515313304	-0.114603891368908	0.784516977925423	0.916077120786182
Merged-chr19-4019388-4	chr19	4019302	4019502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6647.0	NM_133666	17995.0	Mm.29842	NM_133666	ENSMUSG00000037916	Ndufv1	CI-51kD	NADH dehydrogenase (ubiquinone) flavoprotein 1	protein-coding	5.26972450294372	5.71653320389952	5.03146878413949	5.11568310165216	5.32027124991416	5.24663882478192	5.14820089866876	5.68678202408678	0.103162275899608	0.754521301528287	0.903334299140224
Merged-chr14-33320239-4	chr14	33320086	33320286	+	963.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 4 of 10)	CpG	90838.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	4.45950564851514	4.4814677841694	4.76026982846531	4.19747798303398	4.39929464561666	4.59166172502081	4.05281386245613	4.78986466760289	0.0105023714112682	0.979863107216307	0.992764484706202
Merged-chr17-15808623-4	chr17	15808525	15808725	+	896.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178615, intron 2 of 2)	intron (NM_178615, intron 2 of 2)	17961.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	4.57091287437231	4.30060547765853	4.65039235906524	5.13724593955861	4.58640673031138	4.15272340343872	4.77123468245413	4.52747714207791	-0.407614855591513	0.337073515161644	0.646919222783503
Merged-chr18-11832999-4	chr18	11832893	11833093	+	866.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045421, intron 1 of 3)	(T)n|Simple_repeat|Simple_repeat	-6281.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	4.03707615074427	3.64805158721738	4.17083083955842	4.37798023187782	4.07215910637882	3.95608953149891	3.92420088980456	3.83328933028511	-0.387299444671726	0.408980122549586	0.70476365964588
Merged-chr9-42138582-3	chr9	42138517	42138717	+	888.955566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14320.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	2.83892023038508	2.76539154915014	3.45800891440937	3.00527798300647	3.07590169209684	3.15043657629905	3.08798862584071	3.09813409797085	0.237380363596037	0.704147155142713	0.881130943987609
Merged-chr8-95255033-4	chr8	95254926	95255126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195413, intron 25 of 32)	intron (NM_001195413, intron 25 of 32)	51559.0	NM_145601	333329.0	Mm.484049	NM_145601	ENSMUSG00000031789	Cngb1	Cngb1b|Garp2|Gm1959	cyclic nucleotide gated channel beta 1	protein-coding	6.40307170644388	6.27489188450813	6.23417308728059	6.42583728968244	6.36654072191852	6.64870057318441	6.65470930770409	6.72520472818786	0.373613854705868	0.0897319170469131	0.327137273278131
Merged-chr6-108165106-4	chr6	108164992	108165192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145937, intron 3 of 8)	intron (NM_145937, intron 3 of 8)	20491.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	6.32173575315694	5.98405575870906	6.60463708263686	6.53108303770288	6.94047704497616	6.95696932408247	7.05886254916335	6.55166877175539	0.723299354028041	0.00281920944188057	0.0304412179708157
Merged-chr19-29503977-2	chr19	29503877	29504077	+	750.333374	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015567, exon 4 of 4)	non-coding (NR_015567, exon 4 of 4)	18010.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	3.42718707882154	3.45401200138861	3.16695740604762	3.6474471743719	3.12046734748664	3.60381505960739	3.47179934750142	4.10014006110021	0.581253016213811	0.330357086448186	0.641796043873533
Merged-chr18-43477779-3	chr18	43477703	43477903	+	788.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-39517.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	4.36275774194071	4.52801966697755	4.44317386939872	4.73876336958641	3.71952852160616	4.051876856116	3.91209514474293	4.1367304242659	-1.50584542702366	0.000433943590248869	0.00687462070116275
Merged-chr6-22494111-4	chr6	22494019	22494219	+	946.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138038.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	5.35272650271559	5.07962255068662	4.98586500736981	5.25944779705719	5.29603198592738	5.0509907771067	4.77238593348958	4.79141320897298	-0.326090081283821	0.328907086170822	0.640144325858488
Merged-chr5-36796818-4	chr5	36796714	36796914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026242)	promoter-TSS (NM_026242)	-60.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	6.93318017308447	6.85360785079044	6.92089794906087	6.58702578022607	7.50240268066115	7.35443053504981	7.32570011488456	7.19458776618139	0.739860778214707	0.000185723929510105	0.00342034762706333
Merged-chr15-30427551-4	chr15	30427422	30427622	+	830.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 2 of 21)	intron (NM_001355502, intron 2 of 21)	254929.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	3.9122999274915	3.89191608181244	3.86167258128051	4.23241456452343	4.06832250712541	3.87152920003501	4.03738630070904	3.80632924806283	-0.123030967314745	0.7836239463793	0.915735943440675
Merged-chr13-102717208-4	chr13	102717093	102717293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23635.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	5.58306439223981	5.55744791474039	5.78629283938796	5.98282933981036	5.83928805564122	5.45553554933632	5.6604645029753	5.65973118170854	-0.14103121911326	0.611696738841839	0.832472222362879
Merged-chr19-42177172-3	chr19	42177052	42177252	+	860.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164531, intron 2 of 11)	intron (NM_001164531, intron 2 of 11)	6585.0	NM_001164531	319740.0	Mm.287359	NM_177319	ENSMUSG00000018820	Zfyve27	2210011N02Rik|9530077C24Rik|AI426636|AI593546|AI835681	zinc finger, FYVE domain containing 27	protein-coding	3.77928779670556	3.67986696488585	4.13321221514972	3.95547354963415	3.61262606804923	3.54748100615809	3.48434744417917	3.92185125434458	-0.738069257275543	0.132382360165837	0.405161629369399
Merged-chr11-115420034-4	chr11	115419905	115420105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183285)	promoter-TSS (NM_183285)	-86.0	NM_027862	71679.0	Mm.371641	NM_027862	ENSMUSG00000034566	Atp5h	0610009D10Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	protein-coding	7.59590965162986	7.71905810830378	7.18871413772355	7.12951542258045	7.48058128029381	7.61116652297058	7.49015434905907	7.45756202560277	0.111198890230839	0.591890874193296	0.821848634889742
Merged-chr3-123481470-4	chr3	123481354	123481554	+	987.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008939, intron 4 of 10)	intron (NM_008939, intron 4 of 10)	26612.0	NR_028573	100306957.0	Mm.260791	NR_028573	ENSMUSG00000092730	Snora24	ACA24	small nucleolar RNA, H/ACA box 24	snoRNA	5.48514699091732	4.75878471404461	5.01535655916643	5.18816554590556	4.97375995045084	5.25924708563013	5.30275925914002	5.08125535644745	0.0317883729725926	0.923879133819523	0.971863340184091
Merged-chr16-33988556-4	chr16	33988452	33988652	+	814.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 55 of 59)	intron (NM_177357, intron 55 of 59)	-21514.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	4.0533312197047	4.24780673623565	3.94882086341414	4.04765931607684	4.50924069447018	4.07216266283793	4.03702583546813	4.51213224220247	0.577384418308348	0.170025541803483	0.462995831517278
Merged-chr14-47004120-7	chr14	47004000	47004200	+	953.152405	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163433, intron 1 of 11)	intron (NM_001163433, intron 1 of 11)	2760.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	4.07312026812706	4.44424086168332	4.26854663964202	4.083900774985	4.1422785815364	4.52707590982708	4.29357371722708	4.51162569381616	0.362669585481681	0.367517063683194	0.671962421677526
Merged-chr19-12439322-4	chr19	12439210	12439410	+	913.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11405.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	4.1417507164568	3.69564118353819	4.39617232484816	4.41006281956095	4.21209201655386	4.06318414154787	4.12440287016459	4.27290966910549	-0.069536332131996	0.87669892633294	0.953762068317638
Merged-chr16-65582898-4	chr16	65582793	65582993	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-20196.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	5.37963042533881	5.04309757480975	5.41124119809002	5.65564181728191	5.57568813055073	5.42954005250683	6.09904923123938	5.88198846409856	0.617905123331497	0.0498223110506877	0.231134867905683
Merged-chr7-97800331-3	chr7	97800239	97800439	+	781.916687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357364, intron 1 of 14)	RMER15|LTR|ERVL	11798.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	3.15844705768787	3.2845564758127	3.35249962420906	2.87339242854153	3.46174542852061	3.40805210837263	3.82811593983321	3.80294827289908	1.64493077766995	0.00303703160072815	0.0322887038548513
Merged-chr18-37969835-4	chr18	37969710	37969910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175684)	promoter-TSS (NM_175684)	-79.0	NM_175684	319262.0	Mm.285060	NM_175684	ENSMUSG00000038524	Fchsd1	A030002D08Rik	FCH and double SH3 domains 1	protein-coding	7.80478503137097	7.37595973071067	6.73228729194422	7.14813675697385	7.46600061741585	7.18986379266289	7.54731340867411	7.23539528075779	0.0673274576618159	0.788242533654112	0.918059942123998
Merged-chr4-108458740-4	chr4	108458647	108458847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175472)	promoter-TSS (NM_175472)	-679.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	6.3657358757576	6.54207989361998	6.32925281877467	6.6327151600974	6.544176782236	6.54352433197383	6.58423899792056	6.59802321411425	0.113597830223806	0.594385674017691	0.823411261518897
Merged-chr1-61160715-3	chr1	61160606	61160806	+	876.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	182792.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	3.6604555188451	3.8160258735525	3.94663563953401	3.49105135647428	3.45650728116942	3.72453542132859	3.64616238853628	3.60450723025741	-0.385064707628937	0.434557429538481	0.7238182012175
Merged-chr15-84190084-4	chr15	84189992	84190192	+	897.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_054088)	TTS (NM_054088)	-2141.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	4.15847008056951	4.39804839314278	4.35441093075888	3.95784729909107	4.84570596961241	4.5298870493116	4.50300754349599	4.73965788662525	1.05290698073112	0.00619247800705645	0.0555341302840205
Merged-chr13-116985070-3	chr13	116984971	116985171	+	842.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	RMER16|LTR|ERVK	40445.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	3.31122173117782	3.26251391442778	3.64957860947133	3.37735310142881	3.44656514340767	3.55030426897475	3.5839008033474	3.87314305494709	0.701483905223212	0.170119923262417	0.463111103296575
Merged-chr13-104794635-4	chr13	104794542	104794742	+	972.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360094, intron 9 of 13)	intron (NM_001360094, intron 9 of 13)	22311.0	NM_026072	67285.0	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	4.4550812119911	4.59103990137974	4.49982493934867	5.09008856091872	4.45035959195098	4.16550204680905	4.88037145061584	4.73332556587055	-0.255810781159369	0.542037947019132	0.7936339126769
Merged-chr7-101863669-3	chr7	101863569	101863769	+	877.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252552, intron 4 of 6)	intron (NM_001252552, intron 4 of 6)	-6479.0	NM_001303239	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	3.67905913189403	3.44647040595745	3.78131174190626	3.70020952465305	3.6561649783463	3.85035710248179	3.66480353650584	3.77906573206518	0.236967005018455	0.612261409240102	0.832715570504731
Merged-chr16-95990956-4	chr16	95990841	95991041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019537)	promoter-TSS (NM_019537)	19.0	NM_019537	56088.0	Mm.396248	NM_019537	ENSMUSG00000022913	Psmg1	AW552102|Dscr2	proteasome (prosome, macropain) assembly chaperone 1	protein-coding	7.52215193656819	7.4135538980757	7.34652814426319	7.53311393504148	7.70194957449056	7.56544207737971	7.59981846569732	7.72078355520097	0.251520412055731	0.139236396044113	0.414882260299059
Merged-chr11-44520315-4	chr11	44520258	44520458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 1 of 5)	intron (NM_001166553, intron 1 of 5)	981.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	6.18657661975088	6.2994933610922	6.48607636995211	6.47746379020406	6.44312807667425	6.6110873384246	6.63700495777845	6.49793118800098	0.246942424580744	0.256524780915757	0.568162252716061
Merged-chr9-22468323-4	chr9	22468221	22468421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018739)	promoter-TSS (NM_018739)	35.0	NM_018739	55934.0	Mm.38235	NM_018739	ENSMUSG00000032239	Rp9	PAP-1|Rp9h	retinitis pigmentosa 9 (human)	protein-coding	6.32754200416485	6.61139420889001	6.67678941770257	6.53792006194202	6.46899720620732	6.4671492529686	6.65707800113666	6.38011939915414	-0.0712288246085433	0.741283380826352	0.898139463026673
Merged-chr1-180849055-4	chr1	180848969	180849169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2082.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	8.09089581260523	8.27315307795745	7.79853033876271	7.96381814128113	7.98282308422325	7.74310890079352	7.96346275432257	7.74506003179562	-0.226602687601327	0.211797663396785	0.516586351389811
Merged-chr8-72244791-3	chr8	72244684	72244884	+	879.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007456, intron 1 of 11)	intron (NM_007456, intron 1 of 11)	4766.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	3.5354013710498	3.48683028840366	3.53591686860655	3.94624646790893	2.94477527268609	3.15110041065049	3.17156407198522	3.58443078116479	-1.49179099523276	0.013628766284948	0.0981612788487909
Merged-chr6-28420991-4	chr6	28420892	28421092	+	902.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028900, exon 1 of 2)	exon (NM_028900, exon 1 of 2)	732.0	NM_028900	74375.0	Mm.332950	NM_028900	ENSMUSG00000029708	Gcc1	4932417P04Rik	golgi coiled coil 1	protein-coding	4.35524462434686	4.41764994976723	4.30695667177414	4.58852533693083	4.83612074467823	4.86335087573608	4.70647005560142	4.68952890730301	0.731970479532049	0.0403194943973368	0.20283421384607
Merged-chr15-97338045-3	chr15	97337933	97338133	+	900.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 3 of 5)	RMER17C|LTR|ERVK	-90746.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	3.63492328470356	3.62158678998434	3.63538408808232	3.62658234283578	4.0175768095373	4.42339110255592	4.6424269336672	4.28951287406209	1.93561200027808	1.75477264383316e-05	0.000454688613088462
Merged-chr14-55763247-4	chr14	55763149	55763349	+	957.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020490)	TTS (NM_020490)	1821.0	NM_020490	57260.0	Mm.159670	NM_020490	ENSMUSG00000040432	Ltb4r2	5830462O07Rik|BLT2|LTB4-R 2|LTB4-R-2|LTB4-R2	leukotriene B4 receptor 2	protein-coding	5.27505168911285	4.58510001096094	4.83197045626121	5.0659696621357	4.64255331653554	4.80595850595966	4.95131447875675	5.18955930478567	-0.117919158161015	0.745011387049833	0.899431814827356
Merged-chr2-120567641-4	chr2	120567564	120567764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177793)	promoter-TSS (NM_001177793)	-7.0	NM_001177792	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	7.4306250268633	8.09386694013707	7.36975025510557	7.59964310417744	7.67178510724974	7.73434933683419	7.86063236132398	7.70624240040343	0.10947568772083	0.603584127047579	0.828209017602645
Merged-chr15-64263204-3	chr15	64263107	64263307	+	735.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	49466.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	3.93943776884141	3.69336573873561	3.6051943533361	4.09887847924044	3.74012270811098	3.95960789752747	3.92313965627145	4.45501683163214	0.497761550316273	0.314375149237424	0.626354487695056
Merged-chr18-68059232-4	chr18	68059146	68059346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	126073.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	6.90490905875486	7.08892447134487	7.2668850829594	7.23304909505633	6.50716136692284	6.74078071255169	6.51179886432912	6.55785456616158	-0.787787008817036	0.000117969082332132	0.00232601698374482
Merged-chr9-86513579-3	chr9	86513501	86513701	+	852.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177208, intron 16 of 38)	intron (NM_177208, intron 16 of 38)	46447.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	3.27499336877155	3.28040970908847	3.79316408648104	3.60615744910453	3.28547883327677	3.45133889353382	3.44035818237093	3.50624873211002	-0.306338580818153	0.566313151275394	0.80784006963468
Merged-chr9-44334567-4	chr9	44334446	44334646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010436)	promoter-TSS (NM_010436)	-169.0	NM_010436	15270.0	Mm.245931	NM_010436	ENSMUSG00000049932	H2afx	AW228881|H2A.X|H2ax|Hist5-2ax|gammaH2ax	H2A histone family, member X	protein-coding	7.89705697353785	8.1403628803868	7.37368757158393	7.39557394708684	8.1747862937693	8.11807041010814	7.8018998360351	7.72516350836779	0.299383043654837	0.197406693274316	0.498787070539606
Merged-chr7-71873999-4	chr7	71873912	71874112	+	866.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35683.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	5.60822978537974	5.27103901207499	5.86055677323687	5.99309087384582	4.57209954928683	4.40755133887767	4.63281792429318	5.02754787857735	-1.97877003053979	4.46756714709693e-08	2.07299192935601e-06
Merged-chr16-90445593-4	chr16	90445495	90445695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 2 of 10)	intron (NM_015755, intron 2 of 10)	59198.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	5.47708851493381	5.6875814683952	5.53422717101521	5.76823058356098	5.53117198245893	5.73552926548368	5.42189735701496	5.44519196449209	-0.168934293952132	0.535553410712505	0.789782650344438
Merged-chr2-180124853-3	chr2	180124750	180124950	+	913.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144500, intron 1 of 13)	intron (NM_144500, intron 1 of 13)	5484.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	4.20645877421915	4.28549203653329	4.50147051021979	4.68252024386316	3.11504589617274	3.49353515431441	3.43322371573342	3.58103080900021	-3.52578019951639	5.29518688336497e-09	2.96309832681631e-07
Merged-chr7-3664996-2	chr7	3664896	3665096	+	720.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_181820)	TTS (NM_181820)	844.0	NM_027203	69757.0	Mm.389782	NM_027203	ENSMUSG00000078813	Leng1	1500001K17Rik	leukocyte receptor cluster (LRC) member 1	protein-coding	3.52496384256512	3.1989332412879	3.32523735330614	3.00867170712971	2.9678087499999	3.06181370910007	3.4142549605342	3.14973116430437	-0.430589887214087	0.467835762052648	0.747174692764886
Merged-chr10-127520502-6	chr10	127520367	127520567	+	885.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028230, intron 2 of 11)	intron (NM_028230, intron 2 of 11)	1977.0	NM_001252316	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	3.09461506045349	3.14836703845868	2.92586855411947	2.68333463667539	3.18595530972573	2.76225148360601	2.79070720541838	2.73020664711395	-0.359988972872191	0.595569812657617	0.824021972428006
Merged-chr13-100832869-2	chr13	100832769	100832969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022885, intron 1 of 15)	CpG	558.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	4.56423299957031	4.77029994130587	4.86970129565099	4.55286818566213	4.88417888420294	4.60751143638534	4.84611095578437	4.68484168054571	0.172311619525535	0.617710076980058	0.835686723231209
Merged-chr7-110237758-1	chr7	110237658	110237858	+	654.333313	f0_balb.idr	intron (NM_009302, intron 1 of 11)	intron (NM_009302, intron 1 of 11)	16055.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	3.4962009192342	3.36768350304716	3.49668673599693	3.48367645840968	3.30940864579421	3.4997898217878	3.31527563449065	3.54655927526192	-0.155467478946843	0.758269989904937	0.905063463252088
Merged-chr16-96358109-3	chr16	96357988	96358188	+	762.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3669.0	NM_001177887	72058.0	Mm.119714	NM_028078	ENSMUSG00000000159	Igsf5	2010003D20Rik|JCAM|Jam4	immunoglobulin superfamily, member 5	protein-coding	3.69043291597286	3.68883512473708	3.6908863218087	3.92369666502171	4.92824093934766	4.77498941670652	4.7792828241324	4.89092585779534	2.56427969627042	1.77635486171207e-08	8.99922866205009e-07
Merged-chr4-40970981-4	chr4	40970886	40971086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290449)	promoter-TSS (NM_001290449)	43.0	NM_023739	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	6.89780478169125	6.90901488805474	6.51197098165457	6.429101484851	7.09508246901707	7.24925834165363	7.15836641995078	7.07955459703701	0.630661770696091	0.00325760294268178	0.0340388901728048
Merged-chr3-65965448-2	chr3	65965348	65965548	+	772.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7199.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	3.53222185335046	3.50797553354059	3.40974692104757	3.27408980827008	4.11629170097561	3.76497109370907	3.63036096974283	3.93137044762436	1.4217825683431	0.00322496522689963	0.0337622885550064
Merged-chr1-88211914-3	chr1	88211836	88212036	+	809.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201645)	promoter-TSS (NM_201645)	-23.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	3.35242115149603	3.0790808441799	2.93184428001014	3.21657356773707	3.06017013642786	3.30065303159279	3.117992059844	3.35092617181661	0.198849880224752	0.727687604593834	0.891606148888584
Merged-chr4-147941014-6	chr4	147941000	147941200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029841, exon 1 of 3)	exon (NM_029841, exon 1 of 3)	205.0	NM_029841	77034.0	Mm.183076	NM_029841	ENSMUSG00000044496	2510039O18Rik	Kiaa2013	RIKEN cDNA 2510039O18 gene	protein-coding	5.08206828047676	4.90717548393727	5.46015883713568	4.73739690647969	5.15335862822042	4.81521852463633	4.61434565469309	4.71845818520205	-0.413015432230929	0.269640889000334	0.581299598332822
Merged-chr11-75190510-4	chr11	75190433	75190633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144491)	promoter-TSS (NM_144491)	-50.0	NM_144491	116905.0	Mm.41496	NM_144491	ENSMUSG00000078789	Dph1	2310011M22Rik|4930488F09Rik|AW551873|Dph2l1|Ovca1	diphthamide biosynthesis 1	protein-coding	6.47627648537651	6.51093149238397	6.1116331790938	5.7777596948525	6.60899603642465	6.13207068467052	6.22000580629903	6.08587776851932	0.0722909470378807	0.798495720518774	0.922050695005043
Merged-chr11-20914123-4	chr11	20914007	20914207	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82999.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	4.98625609423089	4.73130300563565	4.64858923373086	4.7357775195701	5.25596352525883	5.05702396811802	4.58416142117463	5.01625754132354	0.464902892488921	0.1808615944106	0.477239941744286
Merged-chr15-77905399-4	chr15	77905260	77905460	+	778.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23634.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	3.53037314044901	3.5328312231756	3.30038328969323	3.43766113029395	3.40389409410959	3.69835321294909	3.56786920245953	3.41861387597328	0.232709363153725	0.641760477768501	0.848885559099208
Merged-chr6-87849895-4	chr6	87849814	87850014	+	837.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355195, intron 1 of 4)	intron (NM_001355195, intron 1 of 4)	1192.0	NM_001109745	12785.0	Mm.290251	NM_013493	ENSMUSG00000030057	Cnbp	AA408710|Cnbp1|Znf9	cellular nucleic acid binding protein	protein-coding	3.75833382575348	3.67785056474394	4.10707112553786	4.33461865600631	4.03017384131059	3.98909798750923	3.90354294025212	3.96684574385682	-0.109204501588093	0.817124540808299	0.929671488926088
Merged-chr13-111977960-4	chr13	111977894	111978094	+	913.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	110058.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	4.98096162385385	4.80845736035358	5.34076225666125	5.32653739108975	4.06564692782803	4.10424360307271	4.63348219543919	4.65242240370564	-1.60712227603132	7.62205398504186e-05	0.00160892698873456
Merged-chr1-127257203-4	chr1	127257087	127257287	+	989.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 2 of 17)	MER77B|LTR|ERVL	52201.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	5.27356583825952	5.40765481437087	5.04766096804145	5.36265073007954	4.96601092380351	5.1517339482055	4.98776296453547	5.38407613509844	-0.30072770696108	0.331691624782422	0.642802095357565
Merged-chr13-23751107-4	chr13	23751013	23751213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175660)	promoter-TSS (NM_175660)	25.0	NM_175660	319172.0	Mm.423402	NM_175660	ENSMUSG00000061615	Hist1h2ab	H2A.1|H2a-53	histone cluster 1, H2ab	protein-coding	5.48271835875708	5.14691029916006	5.09725451325063	5.32993094102619	5.22567034495155	5.884605408767	5.56182379654044	5.95884957100958	0.698614100606869	0.0268535664551382	0.155780738349564
Merged-chr8-25080461-1	chr8	25080361	25080561	+	680.0	f0_balb.idr	intron (NM_031257, intron 2 of 11)	ORR1D1-int|LTR|ERVL-MaLR	21350.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	3.24926251991839	3.03100315591801	3.30429499039706	3.44807517295026	2.99257352387714	3.04443921129182	2.92779189225378	3.45297192341445	-0.583781950706782	0.334924499413089	0.64529103101308
Merged-chr6-146662862-4	chr6	146662758	146662958	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046277, intron 1 of 2)	B3A|SINE|B2	5640.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	3.88622162146022	4.05703127076152	4.04438238797386	4.23661815868368	4.18803266544874	4.16754109664848	4.44302790024021	4.27029130005796	0.487857635203971	0.23757408579307	0.547754789215631
Merged-chr9-114390353-6	chr9	114390131	114390331	+	864.0793460000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019922, exon 1 of 7)	exon (NM_019922, exon 1 of 7)	481.0	NM_019922	56693.0	Mm.20904	NM_019922	ENSMUSG00000032431	Crtap	5730529N23Rik|CASP|Leprel3|P3h5	cartilage associated protein	protein-coding	3.70666881371669	3.4185137357028	3.54237711234794	3.52058206798767	3.5749553515355	3.53660435201225	3.83603631364594	4.13717020665392	0.740566264380262	0.136078427663338	0.410490184889333
Merged-chr5-100441297-2	chr5	100441197	100441397	+	864.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172714)	TTS (NM_172714)	-11762.0	NR_034038	100503199.0	Mm.392282	NR_034038	ENSMUSG00000097772	5430416N02Rik	100041797|Adapt33|Gm3514	RIKEN cDNA 5430416N02 gene	ncRNA	3.12070674983123	3.08869946043158	3.36492085984417	3.30221468428389	3.44349601895668	3.47889870548461	3.40552323285303	3.469549120302	0.774807118581612	0.139038242286174	0.414593226669937
Merged-chr13-34188511-5	chr13	34188452	34188652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 10 of 10)	intron (NM_001033167, intron 10 of 10)	25588.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	4.97048157668256	5.0743472802056	5.37464694040717	5.3710975238752	5.06857214283952	5.03441805095378	4.83419345985806	5.20073996062432	-0.33711028998477	0.289835162322591	0.601915892545243
Merged-chr5-90652962-3	chr5	90652874	90653074	+	712.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12447.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	4.01625658713849	3.72885099598849	3.37625927650431	3.71281201950937	3.3417892362837	3.55429720043465	3.59486703429842	3.43679436612983	-0.791929603582511	0.126175343390315	0.394701360955401
Merged-chr19-32637443-4	chr19	32637334	32637534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360403, intron 3 of 11)	intron (NM_001360403, intron 3 of 11)	17429.0	NM_011864	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	6.7105965980675	6.33854365058185	6.80809184521667	6.77825709034473	6.66620220005746	6.48847937182994	6.57367888380756	6.26628448533192	-0.232790112731883	0.309960792992767	0.622114309925992
Merged-chr6-43349050-3	chr6	43348999	43349199	+	926.422241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 8 of 8)	Lx8|LINE|L1	-39545.0	NM_130869	18291.0	Mm.17715	NM_130869	ENSMUSG00000029736	Nobox	OG2|Og2x	NOBOX oogenesis homeobox	protein-coding	3.94494545168529	3.9151125443551	4.12698721170004	4.46549062156093	3.80510656860711	3.73254420233188	3.87968907612515	3.61254269391342	-1.0810979046011	0.0225410375258741	0.138709130289115
Merged-chr3-87031084-4	chr3	87030990	87031190	+	828.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31750.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	4.32691514633641	4.35467469280202	4.44836844961444	3.98503545372204	4.23652351566026	4.36746738247123	3.97587568812005	4.28194001041845	-0.13173043921214	0.751921500807379	0.902329068825205
Merged-chr16-34095921-3	chr16	34095811	34096011	+	759.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 34 of 59)	intron (NM_177357, intron 34 of 59)	-128873.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	3.17401866721875	3.23323492127851	3.17438611974389	3.17381401515662	3.48651594275566	3.62849204740761	3.22551781626343	3.45931021801066	0.957013030973592	0.0670395752966952	0.276152617096475
Merged-chr6-33790939-3	chr6	33790840	33791040	+	883.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 11 of 17)	intron (NM_009148, intron 11 of 17)	-238508.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	3.44729649113952	3.32903130158255	3.70990673392288	3.71792349379902	3.186510100503	3.50305728857556	3.64590501591897	3.6594102356127	-0.196795249526058	0.712776334589595	0.885041593629728
Merged-chr8-84848060-5	chr8	84847917	84848117	+	892.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1086.0	NM_007591	12317.0	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	4.31574347683646	3.92980610733943	4.13596105881886	4.17827759187768	4.33385043802013	4.21140923558078	4.33773074538385	4.39500198686954	0.432885033402565	0.271900664254482	0.583502694795277
Merged-chr7-16057314-4	chr7	16057197	16057397	+	884.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-14548.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	4.35246925075818	3.8312446895219	4.03004668654286	4.31087314879528	4.4640418368858	4.20637900625046	4.11330379341458	4.46692331035565	0.416359914291749	0.328575451671	0.640074224102742
Merged-chr16-37010556-4	chr16	37010440	37010640	+	970.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1246.0	NM_029977	77782.0	Mm.259114	NM_029977	ENSMUSG00000034206	Polq	A430110D14Rik	polymerase (DNA directed), theta	protein-coding	4.94517321391853	4.69309607727212	4.79867351325375	5.01572575204068	4.82795939495674	4.97413392986684	4.8142398865306	5.3535613825551	0.253262112701602	0.459290282337079	0.741899988799976
Merged-chr4-141871638-4	chr4	141871558	141871758	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	MIR3|SINE|MIR	3262.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	4.8140947648056	4.52902595819047	4.32055008461845	4.26684290425917	5.2939913066756	5.09650463911784	5.25309522386964	4.95325851452569	1.38495755790859	6.36570227994066e-05	0.00138776209060918
Merged-chr5-72556340-4	chr5	72556240	72556440	+	953.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133921, exon 3 of 23)	exon (NM_133921, exon 3 of 23)	3305.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	4.60438186232728	4.65461650465305	4.71439929409225	4.78368827127492	4.4652765409889	4.22518384811698	4.42302227738285	4.20420595000467	-0.805764347004977	0.0298950027939031	0.166874861013122
Merged-chr4-148040231-2	chr4	148040131	148040331	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161798)	promoter-TSS (NM_001161798)	-958.0	NR_027809	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	3.10414984113991	2.71006278667347	2.65849313954387	2.41077244224775	2.65687027260218	2.98148067119134	2.85710321840506	3.34760049442674	1.03818007808286	0.144754699915806	0.423930146704668
Merged-chr5-139726543-7	chr5	139726386	139726586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	ID_B1|SINE|B4	9847.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	6.43441580782673	7.01905170824296	6.76300524373596	6.66135761921464	6.77702732218049	7.02275457336172	6.68476454690557	6.93276988040892	0.169555553731855	0.443997744990108	0.730462472425057
Merged-chr4-144981317-4	chr4	144981226	144981426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 68 of 69)	intron (NM_001276465, intron 68 of 69)	88189.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	5.65802415646822	5.8085362427046	5.54923153379501	6.13020645674546	5.98541844594283	5.78142925739083	5.33836737132731	5.68102162145964	-0.161059105577504	0.590666195316392	0.821168950886257
Merged-chr14-43817960-3	chr14	43817874	43818074	+	930.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007894)	TTS (NM_007894)	1665.0	NM_007894	13586.0	Mm.86948	NM_007894	ENSMUSG00000072601	Ear1	EAR-1|ECP 1|Raf1	eosinophil-associated, ribonuclease A family, member 1	protein-coding	3.78802556654226	3.83276840451302	4.21094983885532	3.56195328992087	4.0994767453703	3.79283351769223	4.06653942545242	4.12578457243356	0.480860961926641	0.301790726969393	0.614010637557652
Merged-chr5-53929249-2	chr5	53929149	53929349	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69274.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	3.80546069486487	3.43115833852848	3.56369059253444	3.69129074186881	3.19013665884858	3.62560009062654	3.38060181453283	3.56167542502877	-0.628214731754573	0.230009830257006	0.539151343866937
Merged-chr13-49652920-4	chr13	49652813	49653013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073167)	promoter-TSS (NR_073167)	-165.0	NM_001271397	70930.0	Mm.258915	NM_001081350	ENSMUSG00000021392	Nol8	4921532D18Rik|5730412B09Rik	nucleolar protein 8	protein-coding	8.6724706968863	8.79972211049695	8.5477751214885	8.52118868415242	9.02343694505831	8.89541862052361	8.91135614949733	8.77055857335439	0.334669199273855	0.0291360360270484	0.164111253333012
Merged-chr5-141013575-4	chr5	141013448	141013648	+	975.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12952.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	5.00462545380842	4.81626318657071	5.29912267575454	5.26990991341507	5.20765551216328	4.8112552867141	5.46012050419279	5.62581317204523	0.353415177703519	0.305227943771412	0.617681861656628
Merged-chr14-45049844-4	chr14	45049703	45049903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61692.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	6.72781594404344	6.77958486175474	6.89129923394736	6.9125798390408	6.69455191635539	6.57859303796384	6.42283706560774	6.4148246894483	-0.421724724747537	0.0425118134131407	0.209379211661635
Merged-chr5-62760404-4	chr5	62760309	62760509	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	RSINE1|SINE|B4	5768.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	4.61487542717695	4.41728115422996	4.27187894461523	4.73355042913438	4.74940527473306	4.39781721627608	4.39173125930835	4.64971485136811	0.0659907973492672	0.863634395329868	0.948739584300779
Merged-chr17-20945665-1	chr17	20945565	20945765	+	1000.0	f0_c57.idr	intron (NM_016891, intron 1 of 14)	CpG	211.0	NM_016891	51792.0	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding	6.57430473910853	6.61870601054365	6.65546071906148	6.64689914624281	6.91062851382262	7.09547762985491	6.63686060853766	6.6963539615796	0.315704708759057	0.131677887493441	0.404069478636305
Merged-chr3-97737333-3	chr3	97737245	97737445	+	940.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 24 of 46)	intron (NM_001039376, intron 24 of 46)	30669.0	NM_178080	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	4.17542427396406	4.21806066352727	4.08549860418009	4.60868040159881	3.82957981756541	3.9481442817469	3.75446199499972	3.98572387718145	-1.14186725591309	0.0106299717944857	0.0825205324855159
Merged-chr5-43103219-1	chr5	43103119	43103319	+	746.0	f0_balb.idr	Intergenic	B4A|SINE|B4	-130244.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	3.20741298597683	2.9838992881865	2.92969719904357	3.46390730591228	2.50288440771579	2.76151371141632	2.85640668838506	2.6539673904598	-2.37774207296718	0.00140050689585682	0.0176749433227292
Merged-chr15-78928269-4	chr15	78928184	78928384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008495, intron 2 of 3)	intron (NM_008495, intron 2 of 3)	1559.0	NM_008495	16852.0	Mm.43831	NM_008495	ENSMUSG00000068220	Lgals1	AA410090|Gal-1|Galbp|L-14.5|L14|Lect14|galectin-1	lectin, galactose binding, soluble 1	protein-coding	6.72792920484856	6.62316998880416	6.58677906161028	6.6506232896521	6.18859937590312	6.41898573009232	5.8471237219533	5.97407445303876	-0.778880101235957	0.000847292991047352	0.0117823387216205
Merged-chr12-85146566-3	chr12	85146481	85146681	+	825.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146244, intron 4 of 10)	intron (NM_146244, intron 4 of 10)	4683.0	NM_146244	238323.0	Mm.44829	NM_146244	ENSMUSG00000019235	Rps6kl1	A830084F09Rik|AW046440	ribosomal protein S6 kinase-like 1	protein-coding	4.15908209090374	3.78592379997612	3.79379470528456	4.02401047157749	3.54319827849325	3.91422070375821	3.7251053928041	3.94128368085097	-0.489249085896366	0.295567974447338	0.607497122612315
Merged-chr5-81078198-4	chr5	81078094	81078294	+	875.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 2 of 27)	ORR1F|LTR|ERVL-MaLR	56601.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	4.45426167909712	4.03992117983141	4.21051756895428	4.4213127008676	4.16410087642819	4.19216129188435	4.00056484207502	4.11484136762527	-0.446760234971233	0.276189456055649	0.588251592396369
Merged-chr4-126250611-3	chr4	126250481	126250681	+	809.650024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	5738.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	3.67926674008184	3.95346254627019	3.73329757536701	3.62989060217537	3.88299957713141	3.55589152136458	3.76923740872662	3.96883465031697	0.170226608162297	0.716111218372771	0.886409300440934
Merged-chr11-48988353-3	chr11	48988265	48988465	+	724.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011579, intron 1 of 1)	intron (NM_011579, intron 1 of 1)	3881.0	NM_011579	21822.0	Mm.15793	NM_011579	ENSMUSG00000078922	Tgtp1	Gtp2|Irgb6|Mg21|Tgtp	T cell specific GTPase 1	protein-coding	3.38995739416318	3.68300425607829	3.39037688058366	3.19859913613761	3.75073340985484	3.62381000391127	3.74283505780898	3.4482219432427	0.754053575045293	0.14015008452586	0.416213336303895
Merged-chr4-66826503-4	chr4	66826387	66826587	+	857.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1064.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	4.45287292542664	4.32812652126628	3.88747314127636	4.36217443515935	4.42793784714956	4.17780469183805	4.22830348087047	4.19875389901859	-0.0283628173962528	0.945251433981696	0.980411707344997
Merged-chr11-95416173-4	chr11	95416077	95416277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359107, intron 1 of 9)	intron (NM_001359107, intron 1 of 9)	2094.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	6.13015239777279	5.55177401646177	5.68079206038896	5.45136252873113	5.78032575270351	5.83037326325587	5.75059083823413	5.67677302514958	0.0783774257781239	0.78247941202827	0.91529005173258
Merged-chr5-5897919-3	chr5	5897829	5898029	+	636.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148612.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	2.94143468552221	2.88907584405742	3.05323269086447	3.1336357950435	2.64576020014804	2.85980573330022	2.67776031146281	2.68401005455474	-1.43912871972302	0.0280470423510575	0.160260129044386
Merged-chr17-69085676-4	chr17	69085584	69085784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	10007.0	NM_001355732	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	5.35417183554081	6.11209871888537	5.59735762348925	5.17417362506926	5.91365019457209	6.08727786920086	5.88308177426342	5.67358083267106	0.480902263307485	0.130260063101354	0.401741021339368
Merged-chr10-81297295-4	chr10	81297182	81297382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	4319.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	7.14213564956794	7.32308775058877	6.80847286202849	6.51513479201826	6.7611168872353	6.76149130144095	6.37532780584962	5.95863989413357	-0.667590809725089	0.0195401750306071	0.125982800589093
Merged-chr8-69985347-4	chr8	69985229	69985429	+	694.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 1 of 12)	intron (NM_001286450, intron 1 of 12)	-10946.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	3.82380337436626	3.67470926455896	3.72240034479775	3.61315919012797	3.77570663634108	3.9449475725477	3.94551177055845	3.55093867512392	0.323840586220553	0.482989113068522	0.757489965387338
Merged-chr19-10580945-3	chr19	10580853	10581053	+	824.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362431, intron 3 of 7)	intron (NM_001362431, intron 3 of 7)	3505.0	NM_001282067	225912.0	Mm.252701	NM_201351	ENSMUSG00000034445	Cyb561a3	2310004G04Rik|Cybasc3|Lcytb	cytochrome b561 family, member A3	protein-coding	3.80069270620636	4.11844784523534	3.58582295895486	3.31625822227953	3.87807832414555	3.64424316486997	3.96721224954136	3.46173951005753	0.0541085761180926	0.919886972343727	0.970406583631903
Merged-chr7-127840904-2	chr7	127840804	127841004	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009294)	promoter-TSS (NM_009294)	-904.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	3.90515998859891	4.11933277867853	4.42458999096253	3.65011509793151	4.57964276878699	4.29495335516485	4.28253331325462	4.38225242117602	0.877697687335449	0.0476281118738506	0.225077770221007
Merged-chr2-126950637-2	chr2	126950537	126950737	+	981.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17402.0	NM_023220	66552.0	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	3.34989491246496	3.12420712618256	3.11330466389957	2.99187330504929	3.17067739204822	3.35113068270158	3.22490693329487	3.59345481292246	0.743313351439879	0.180099347500683	0.476429607750812
Merged-chr5-43180625-4	chr5	43180515	43180715	+	986.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-52848.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	5.55233380609763	5.31852109131986	5.41687881481986	5.74596570403495	5.47741020093852	5.40761066393191	5.36098525262742	5.22750159848791	-0.277264773123478	0.337778415428296	0.647573070380888
Merged-chr14-120240386-2	chr14	120240286	120240486	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35283.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	3.06614972410404	3.12829555843699	3.18760321363194	3.11509300318213	3.18881360634696	3.29841966807432	3.11741325334217	3.29638829567053	0.391592035626271	0.467866405550232	0.747186337721195
Merged-chr2-166977745-4	chr2	166977669	166977869	+	816.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	-13052.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	3.53264211615175	3.86832540415099	3.53309590677695	3.61380028254089	3.6504565984723	3.64902847157277	3.46191720710674	3.83664797567742	0.0321764354316235	0.947222247779202	0.981107020262516
Merged-chr15-59680275-2	chr15	59680175	59680375	+	782.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31621.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	3.74664341408611	3.71619396753028	3.48754647140132	3.59074726167215	3.84775360353584	3.48065202782634	3.53017716786759	3.23353084527249	-0.266100658746582	0.613612692961103	0.833390663110181
Merged-chr5-91961111-4	chr5	91961019	91961219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073442, intron 1 of 9)	intron (NR_073442, intron 1 of 9)	1437.0	NR_073442	68098.0	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	6.05466161301911	5.96935813579629	6.05573172912568	5.8318445925278	6.14278307880026	6.09961339685169	5.77229757262862	6.33124619183761	0.20896979216055	0.403550593192404	0.700922982752502
Merged-chr13-112003315-4	chr13	112003178	112003378	+	957.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135342.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	4.52275616196653	4.89786950774552	4.44385888607174	4.1570626197464	4.49163562239695	4.443793838475	3.87551703969136	4.11622603803829	-0.625927060116282	0.165661787738284	0.456520341709248
Merged-chr14-68598163-4	chr14	68598070	68598270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16098.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	6.17480807747204	6.1271651850767	6.43331562444789	5.57094820097414	6.06973828400451	6.07669473570763	5.82180786530139	5.9871572345216	-0.158463656643682	0.579559938926632	0.815395653321844
Merged-chr13-55362779-4	chr13	55362687	55362887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025828)	promoter-TSS (NM_025828)	-4.0	NM_025828	66890.0	Mm.38868	NM_025828	ENSMUSG00000021484	Lman2	1110003H06Rik|1300009F09Rik|AA408240|AL023023|AU040819|GP36B|VIP36	lectin, mannose-binding 2	protein-coding	8.6841105649398	8.87279224128435	8.68547647738487	8.6096997057215	8.55628009122564	8.74459967005808	8.8348850944938	8.58043347566998	-0.0416110844623347	0.790282776604085	0.918828686312538
Merged-chr9-90270603-7	chr9	90270540	90270740	+	970.380981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_194334, exon 1 of 13)	exon (NM_194334, exon 1 of 13)	129.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	3.82615828875955	3.96283318552723	4.29840949761593	4.13815060088995	4.13688146576986	3.94741323620263	4.19787674216913	4.0816741018156	0.0647373536252294	0.878978044102943	0.954735593859446
Merged-chr18-73844519-4	chr18	73844389	73844589	+	695.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14896.0	NM_027741	71263.0	Mm.126220	NM_027741	ENSMUSG00000064036	Mro	4930507C04Rik|4933435E20Rik	maestro	protein-coding	3.63262474032296	3.40074045881239	3.4203901811685	3.39150131457798	3.57365570444803	3.64720650101323	3.40769011145277	3.41861437766798	0.19421228943498	0.696190717414617	0.877126859863619
Merged-chr4-142023412-4	chr4	142023338	142023538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131014, intron 1 of 1)	intron (NR_131014, intron 1 of 1)	5540.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	5.33692488434588	5.35183359405351	5.58969675509031	5.40145534688672	5.4341761722159	5.38526250685018	5.40039716945427	5.79516932262169	0.161271467927714	0.568399187056451	0.808665348796528
Merged-chr14-30641916-4	chr14	30641802	30642002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12473.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	6.87711094147764	7.59921461540458	6.67536083181353	6.24919723771693	7.13630605417814	7.05538813006544	6.73178586312293	6.4478313066227	-0.102174673500572	0.746346101069567	0.900074408757744
Merged-chr13-63098266-1	chr13	63098166	63098366	+	893.0	f0_balb.idr	intron (NM_001289926, intron 5 of 15)	intron (NM_001289926, intron 5 of 15)	133373.0	NM_001289924	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	4.26810731458526	3.80896744057561	4.26887651259673	4.6041347349051	2.92335733130855	3.1779526176372	3.28570521516384	3.29509211185237	-4.6450060081539	1.67165382613192e-08	8.50512135026764e-07
Merged-chr9-44482711-4	chr9	44482605	44482805	+	953.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357490)	promoter-TSS (NM_001357490)	-120.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	4.99674542500742	5.22328652456778	4.82016592470663	4.72882416267022	4.54122040383701	5.13670816734094	5.06790170234287	4.65524775037606	-0.167669346791642	0.646089414199953	0.851204149823479
Merged-chr17-28967291-4	chr17	28967183	28967383	+	894.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356299, exon 7 of 7)	3' UTR (NM_001356299, exon 7 of 7)	14067.0	NM_025888	66989.0	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	4.70713508503137	4.8780231182962	4.47786841632307	4.4992299533202	4.4997153110567	4.09734585887192	4.18018867070886	4.63271299785517	-0.608986236950205	0.128594168581752	0.399023685665482
Merged-chr5-85916050-2	chr5	85915950	85916150	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	149533.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	2.55058833247201	2.51537277325375	2.55092091774348	2.25944541331256	2.37008108794254	2.37658731442535	2.34232579679045	2.66847786233379	-0.129173368042825	0.859239127793307	0.946672577620924
Merged-chr3-21468202-4	chr3	21468082	21468282	+	821.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-608470.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.55023188284761	3.53446123878317	3.82328498333866	3.90930701416923	3.54344036524501	3.60553703360919	3.94485423779024	4.12474469383069	0.292471441911814	0.56245997341001	0.805702122104067
Merged-chr7-4151410-3	chr7	4151319	4151519	+	868.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021454, exon 3 of 3)	exon (NM_021454, exon 3 of 3)	-1547.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	3.50913951661135	3.229571019756	3.45709630148314	3.17234488829466	3.30295829627576	3.45954661083952	3.54470872490526	3.40043467213604	0.310859734859674	0.552337871711779	0.799570009570322
Merged-chr10-8010110-4	chr10	8010003	8010203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53980.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	7.50513255596338	7.08329372040764	7.59018217185589	7.62118862984115	6.83987340837075	7.01277179798506	6.84307175139306	6.92902924308558	-0.772553418765585	0.00017072937902813	0.00318875530565292
Merged-chr19-11589383-4	chr19	11589292	11589492	+	942.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026835, intron 5 of 6)	intron (NM_026835, intron 5 of 6)	15412.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	4.77978149851768	4.82969665053697	4.85633478522605	5.03874931881257	4.58791440090457	5.13405532940861	4.83321903032304	5.08725755205926	0.0514765111806163	0.881408649374435	0.955384724180766
Merged-chr5-136243915-2	chr5	136243815	136244015	+	779.5476070000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302938, intron 1 of 8)	CpG	1025.0	NM_001302939	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	2.73288373327706	2.93829717082211	2.73314488424378	2.72713725031582	3.03715459630525	2.97795251560687	3.19480129235322	3.04889376980626	1.23047633307524	0.0388644820837871	0.198019682909226
Merged-chr12-70695251-4	chr12	70695146	70695346	+	925.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130268.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	4.53240951056687	4.99227905543822	4.49236817087182	4.70668002898963	3.57727977191696	4.5829563666114	4.55076086011768	4.1620718143372	-0.963786976686712	0.046519389723322	0.221678989225021
Merged-chr8-26104685-4	chr8	26104583	26104783	+	991.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207659, intron 2 of 21)	intron (NM_207659, intron 2 of 21)	14541.0	NM_207659	320191.0	Mm.334464	NM_207659	ENSMUSG00000037234	Hook3	5830454D03Rik|AI317159|E330005F07Rik	hook microtubule tethering protein 3	protein-coding	5.16685882806263	4.95998587338319	5.10538642565151	5.15134002742936	4.88088536555355	4.87367811729676	5.17202603899133	5.03637875972515	-0.208991455643297	0.501901327239643	0.769448365511349
Merged-chr11-53794993-4	chr11	53794908	53795108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	24535.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	8.02341554019442	7.96302841792264	8.16130958529442	7.99073690589057	7.91554228002149	7.73939579123991	8.00582868660641	7.63910050689715	-0.255427438207971	0.134961072740605	0.408931339158154
Merged-chr7-43343352-4	chr7	43343256	43343456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7985.0	NM_001271019	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	5.86255956497435	5.6068311521361	5.67605683488499	5.91673950191876	5.38139076118883	5.69058770274113	5.72048912613201	5.42154305425457	-0.381110193825406	0.162593447972964	0.451938418981083
Merged-chr17-45766705-4	chr17	45766606	45766806	+	946.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	32200.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	4.36177456828549	4.00073304227846	4.77277301651636	4.83414440544373	4.84406011248463	4.63194832059739	4.52165638270185	4.90242280747736	0.404514022524547	0.334648408593918	0.645157506515558
Merged-chr7-30508251-4	chr7	30508148	30508348	+	922.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019546, intron 7 of 9)	intron (NM_019546, intron 7 of 9)	-6874.0	NR_036630	100504207.0	Mm.297831	NM_001004161	ENSMUSG00000062132	Arhgap33os	Gm1082	Rho GTPase activating protein 33, opposite strand	ncRNA	4.15248728377408	4.13967705229591	4.09399235645802	4.19088982065867	5.02871555493462	4.96433704609827	5.21216124244479	5.26074072213687	2.06054007571619	1.06493876863545e-08	5.62324010479989e-07
Merged-chr6-57542197-4	chr6	57542096	57542296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-6770.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	5.60801449251034	5.34666357219082	5.5833827916584	5.63755841685242	5.33787375140745	5.78191414102653	5.36114845433564	5.38414257484188	-0.142068640439676	0.618020261953447	0.835822295464892
Merged-chr9-32472517-4	chr9	32472426	32472626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 2 of 8)	Lx8|LINE|L1	68926.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	5.74607016380454	5.72394392020018	5.92805066611787	6.23060382439988	5.39927573450585	5.56249817540072	5.44965324608365	5.64181040807544	-0.717762795257534	0.0102263657219708	0.0801989847682397
Merged-chr2-13272978-4	chr2	13272873	13273073	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1558.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	4.95958274415469	4.47149966339503	5.0233218998021	4.74021195026089	4.78777048386836	4.31843055291067	4.93602359591232	4.8908683315648	-0.103909622792075	0.781865558670293	0.915127881120275
Merged-chr4-46390670-4	chr4	46390560	46390760	+	975.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1223.0	NM_001347095	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	5.22104094720138	5.65312564618675	5.22191735257582	5.57398764910408	5.59763648164674	5.52757519526544	5.62431823728052	5.52105155553123	0.207951334725643	0.464722746131394	0.745548601399353
Merged-chr16-17406723-4	chr16	17406652	17406852	+	746.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001983)	promoter-TSS (NM_001001983)	-438.0	NM_001001983	224020.0	Mm.5718	NM_001001983	ENSMUSG00000041720	Pi4ka	Pik4ca	phosphatidylinositol 4-kinase alpha	protein-coding	3.72953128245918	3.75315656464355	4.13839828319874	4.53357055591433	3.93500721582473	3.85011792444071	4.20342816631177	3.997488768365	-0.256117790671928	0.606167067853238	0.829351704182035
Merged-chr14-55884940-4	chr14	55884840	55885040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019820)	promoter-TSS (NM_019820)	-2.0	NM_027143	219094.0	Mm.37592	NM_027143	ENSMUSG00000047153	Khnyn	6330555F21|9130227C08Rik|AI605259|Kiaa0323|mKIAA0323	KH and NYN domain containing	protein-coding	7.84794704579531	7.68056833875614	7.80484422633444	7.7501338851152	7.63788832654951	7.63750870401095	7.83284603276505	7.52237021323299	-0.141047628230278	0.404934626447217	0.701981537472882
Merged-chr6-88893712-2	chr6	88893612	88893812	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008564, intron 2 of 15)	intron (NM_008564, intron 2 of 15)	5068.0	NM_008564	17216.0	Mm.16711	NM_008564	ENSMUSG00000002870	Mcm2	AA959861|AW476101|BM28|CDCL1|Mcmd2|mKIAA0030	minichromosome maintenance complex component 2	protein-coding	2.8905605366509	2.78853951245326	2.83043019166074	2.61491823431654	2.67257451875909	2.80699596146459	2.75763392645145	3.00223396941033	0.166450016782038	0.792850136397621	0.919769217182168
Merged-chr7-100461793-4	chr7	100461694	100461894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 32 of 32)	intron (NM_001017985, intron 32 of 32)	-11197.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	7.6233245000896	7.6174314073175	7.13818730498844	7.44419050317588	7.34665868490195	7.31582122438936	7.43937069910473	7.3029798024475	-0.158736236733528	0.405346279739564	0.702255804744808
Merged-chr4-98322435-4	chr4	98322339	98322539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60826.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	6.20768326862415	6.14369778422924	6.13048812480007	6.25678762346134	6.12726447758354	5.79520732344323	6.33621557797702	5.97628477532452	-0.170427899960428	0.481695339263381	0.756755039529514
Merged-chr17-66221409-4	chr17	66221308	66221508	+	869.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	97888.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	4.52943620536919	4.22744256991286	4.3302216333848	4.43049356268098	4.23194705758797	4.31928646211408	4.31086603919736	4.19074088632268	-0.298720093745345	0.435525890649629	0.724661571578343
Merged-chr4-32268099-4	chr4	32267998	32268198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149337.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	5.46140256528527	5.64145783875844	5.68724737613934	6.28766788702307	5.71793712279128	5.60994737780437	5.91256070884027	5.65721153242657	-0.173306947343852	0.573587026995402	0.811888602285473
Merged-chr7-30216983-4	chr7	30216878	30217078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14413.0	NM_001360648	66411.0	Mm.27947	NM_025548	ENSMUSG00000006095	Tbcb	2410007D12Rik|AU041393|CG22|CKAPI|Ckap1	tubulin folding cofactor B	protein-coding	5.81626563900294	5.73862920545092	5.39423370969268	5.35221033349882	5.58707078588561	5.57020692748704	6.06331299895289	5.71977125291756	0.286388836920545	0.325960108370231	0.63752464702773
Merged-chr13-54789236-4	chr13	54789121	54789321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028841)	promoter-TSS (NM_028841)	-184.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	8.2579044203999	8.45666747470501	7.70955448212965	7.81685918114881	8.02467120284308	8.40321748531728	8.09191212133565	7.70431143216339	-0.0217286907577012	0.924969631603564	0.972315706111235
Merged-chr1-142468481-3	chr1	142468374	142468574	+	994.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1172223.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	4.65073928057067	3.81371034178388	4.11607073131175	4.71960066323476	3.75684822066942	3.91780770846387	4.05000956043567	3.96260683052668	-1.19619810340104	0.0136805053093858	0.0984043014794546
Merged-chr15-87108417-4	chr15	87108332	87108532	+	775.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-435867.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	3.26794659362602	3.1679425642242	3.44615830791605	3.51742147732527	3.49154087182239	3.38079661398605	3.63447933711771	3.64827339895907	0.585145090608634	0.262940032600606	0.574735947525663
Merged-chr6-85306732-3	chr6	85306632	85306832	+	895.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178639, intron 2 of 13)	MTD|LTR|ERVL-MaLR	26690.0	NM_178639	94282.0	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding	3.72569707904523	4.10840468806987	3.67237775363873	4.07544794829316	3.58172270365735	3.54695547388686	3.658165002189	3.72412754385244	-0.885476978847508	0.0671059545416309	0.276311786016625
Merged-chr5-17816358-3	chr5	17816257	17816457	+	928.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159557, intron 5 of 15)	intron (NM_001159557, intron 5 of 15)	19539.0	NM_001159555	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	4.26931983174677	4.01246150530056	4.51490355152101	4.30600820963434	4.67271564321914	4.25297919697204	4.15882690728882	4.17413563787711	0.145634668410627	0.728890805575914	0.89229600557387
Merged-chr17-31110444-4	chr17	31110332	31110532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 11 of 14)	ORR1E|LTR|ERVL-MaLR	19179.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	7.24551611143342	7.10941287878461	7.08409439425529	7.3024077354356	6.67269565417221	6.70307939469426	6.84857058633922	6.67236867735208	-0.656178603312225	0.000691428063490084	0.010031626198769
Merged-chr17-36121560-4	chr17	36121458	36121658	+	916.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046286)	promoter-TSS (NR_046286)	-114.0	NR_046286	15024.0	Mm.426031	NM_010395	ENSMUSG00000079491	H2-T10	H-2T10	histocompatibility 2, T region locus 10	protein-coding	5.44772109754645	5.59044129367764	4.87682880270111	5.1704516398847	7.50272964263483	7.63089591019431	7.04949932820077	7.04961759460834	3.03766421071683	1.53374476544987e-27	1.36463023324946e-24
Merged-chr8-119836892-5	chr8	119836795	119836995	+	801.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	3684.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	3.67005809581033	4.08025838113259	4.00095422804779	3.97428389172616	4.01169124427657	4.12409629041627	4.03120520486117	4.26111195216778	0.431276964088552	0.314539816888926	0.626465656341622
Merged-chr17-17617568-2	chr17	17617464	17617664	+	792.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	6925.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	3.17371839212101	3.05927546182432	2.71007474886794	2.98182551910135	3.23823788187443	3.16735122740088	3.10530445621747	3.22697936717849	0.774660462253029	0.189139162817676	0.488045549037498
Merged-chr1-134420332-4	chr1	134420273	134420473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306069, intron 1 of 7)	intron (NM_001306069, intron 1 of 7)	4709.0	NM_001306069	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	7.64924537749208	7.41548736501428	7.3072408367827	7.16543750085112	7.43021807611428	7.48455503726429	7.53803352120086	7.53515734552638	0.147402365059272	0.435703263078059	0.724787271556548
Merged-chr10-81060302-4	chr10	81060203	81060403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024499)	promoter-TSS (NM_024499)	-32.0	NM_024499	52551.0	Mm.30068	NM_024499	ENSMUSG00000004937	Sgta	5330427H01Rik|AI194281|D10Ertd190e|Sgt|Stg	small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	protein-coding	7.10167175922327	7.66846150975686	7.00214451259414	6.58578653373904	7.38419064180243	7.74040475293839	6.97970092178504	7.38822025869394	0.342705163793504	0.211238529262827	0.515823776952854
Merged-chr2-167920113-4	chr2	167920034	167920234	+	889.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12193.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	4.76734310319113	4.27477775423813	5.19094665769488	4.62535508448138	4.5878394929776	4.07941588382482	4.21497638091109	4.06900962165696	-1.09258536828937	0.0153797408670255	0.106749349114969
Merged-chr4-55530343-4	chr4	55530242	55530442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010637, exon 3 of 5)	exon (NM_010637, exon 3 of 5)	2133.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	7.24132939230454	7.06226000101087	7.0825705264688	7.48525185809601	7.15786421376477	6.94393130867632	7.32848319432114	7.30026060716544	-0.0673678233979973	0.744040339490594	0.899197706582695
Merged-chr17-15774121-4	chr17	15774006	15774206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52480.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	5.73710365702777	5.39879426352997	5.24872681719121	5.91553698419617	5.9984987616359	5.32128191343927	5.800406700178	5.63472880599386	0.174045349019556	0.582418790471805	0.816543320790947
Merged-chr13-91037501-3	chr13	91037392	91037592	+	828.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 4 of 7)	PB1D7|SINE|Alu	114370.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	4.02871610079087	3.82414391670807	4.0293325778514	4.33482996497405	3.61290594300103	3.89997788385009	3.96586763324434	3.66301610471646	-0.824951813081976	0.0788152721580297	0.303817614781283
Merged-chr5-31881689-2	chr5	31881589	31881789	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 6 of 11)	intron (NM_144541, intron 6 of 11)	183639.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	2.93646838773791	2.96512633150968	2.93677685740195	3.15946625885074	3.09873919760992	3.29208319315325	3.16825646182312	3.17898858535753	0.662927431629547	0.249035174742781	0.560207151982062
Merged-chr14-32572705-3	chr14	32572608	32572808	+	723.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081221, intron 18 of 20)	intron (NM_001081221, intron 18 of 20)	-26700.0	NM_001347590	107751.0	Mm.119274	NM_001001796	ENSMUSG00000041730	Prrxl1	Drg11|Drgx	paired related homeobox protein-like 1	protein-coding	3.32809460136198	3.10119005014994	3.12098254318232	2.98056518688007	2.75282049971991	2.91114365202614	3.10851727822717	2.80213086687602	-1.02069250832058	0.102231963908972	0.351042933044369
Merged-chr2-52901046-4	chr2	52900937	52901137	+	775.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	Lx8|LINE|L1	43169.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.78527898428712	3.54513042053265	3.67870776262582	3.46271092828613	4.1215407937539	4.00719492037631	3.60795382376464	3.97404709585517	0.982904968445315	0.0360143940706104	0.18854578961106
Merged-chr5-73293730-3	chr5	73293570	73293770	+	762.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023429, intron 1 of 8)	intron (NM_023429, intron 1 of 8)	876.0	NM_001159888	68095.0	Mm.247039	NM_023429	ENSMUSG00000029152	Ociad1	6030432N09Rik|AI481327|AW557942|Asrij|B230209J16Rik|BB021357|Emi2|Imi2|OCIA|TPA018	OCIA domain containing 1	protein-coding	3.20955498995624	3.5345299065327	3.52239571110566	3.35300087996341	3.8312729006737	3.58141035681525	3.8446529623631	3.52047366266122	0.95670163449246	0.0552040909301885	0.24566251880712
Merged-chr2-129539350-3	chr2	129539260	129539460	+	828.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2758.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	3.71928805778172	3.75794706461357	3.18430696533237	3.03714887117197	3.77601858578523	4.14581645969897	4.20074864028355	4.21914560024068	1.87111357444176	0.000765532736604582	0.0108637098236056
Merged-chr11-87039478-4	chr11	87039366	87039566	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025638, intron 7 of 9)	B4A|SINE|B4	34671.0	NM_025638	66569.0	Mm.281887	NM_025638	ENSMUSG00000061666	Gdpd1	2610020H15Rik	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding	5.21203612300267	4.99763010390649	5.15455558737368	5.15846559031376	4.8953915733908	4.78262279146626	4.33274374470304	5.12075126640259	-0.623285034611428	0.0773362867273103	0.300748815442531
Merged-chr14-70914538-3	chr14	70914468	70914668	+	907.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 2 of 7)	intron (NM_001302094, intron 2 of 7)	24461.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	3.6652438341384	3.73418687509732	3.414303977072	3.57619525510473	3.34588935490218	3.28206157940835	3.16060255571313	3.02871526157142	-1.40068147029683	0.0128144978848052	0.0941931720510883
Merged-chr7-78865047-4	chr7	78864939	78865139	+	953.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17828.0	NM_029585	76375.0	Mm.250541	NM_029585	ENSMUSG00000030610	Det1	2610034H20Rik	de-etiolated homolog 1 (Arabidopsis)	protein-coding	4.37146699191532	4.15212159185155	4.66294059671735	4.77105412959081	4.52380551656204	4.1857471642691	4.81231128342258	4.86471795677666	0.219932925507935	0.598414659164271	0.825972134899914
Merged-chr17-45686309-4	chr17	45686190	45686390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198167)	promoter-TSS (NM_198167)	-59.0	NM_026732	68463.0	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	6.87870369464076	7.31091352736275	6.83755802841324	6.5294602673044	7.38485411250313	7.38435207266538	6.93821307221356	7.0313916585699	0.39951100432229	0.0998829302784429	0.346689769068576
Merged-chr9-79759791-4	chr9	79759714	79759914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009945)	promoter-TSS (NM_009945)	39.0	NM_009945	12866.0	Mm.152627	NM_009945	ENSMUSG00000032330	Cox7a2	COX7AL|Cox7a3|CoxVIIa-L	cytochrome c oxidase subunit VIIa 2	protein-coding	8.06390111004337	8.16556594479978	8.27898339332788	8.35228417952877	8.21787908915601	8.10947141293771	8.53318461418652	8.05986387117291	0.025904589181913	0.884350155089151	0.956556540271263
Merged-chr4-99224475-4	chr4	99224390	99224590	+	963.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001145967, exon 7 of 11)	exon (NM_001145967, exon 7 of 11)	30343.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	4.48124638780259	3.86044487209235	4.06237765634907	4.25200309155315	4.63424168676779	4.29579775634313	4.53733497940326	4.79385910781198	0.914585218483064	0.0262649456878683	0.153549460423124
Merged-chr12-33156502-4	chr12	33156389	33156589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	ID4_|SINE|ID	8803.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	6.8302270093924	6.93352538451512	6.8314297217582	6.36915629708823	6.80093685075414	7.218328392403	6.83642262820919	6.07211946958865	0.0586202022987063	0.835307935580731	0.937309403269814
Merged-chr3-51156814-4	chr3	51156731	51156931	+	899.962524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67616.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	4.72778864615466	4.34005404844706	4.35204845867819	4.35113289870341	4.70206315185114	4.7882999485382	4.38018885695044	5.09831010825301	0.694349267913562	0.0695565679010937	0.28213600583751
Merged-chr2-58480944-4	chr2	58480834	58481034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355048, intron 3 of 10)	intron (NM_001355048, intron 3 of 10)	80476.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	6.38760925343229	6.44549497388617	6.45953844814589	6.68821628611142	6.3928632579632	6.6858221409015	6.55685715518389	6.60120009409973	0.0595405632829452	0.785478478955807	0.916505297339399
Merged-chr17-5573222-4	chr17	5573148	5573348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	X7A_LINE|LINE|CR1	80648.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	8.49151239647303	7.95698815984513	8.39360776763601	8.54187662142799	8.27231093922335	8.12964603049573	8.30182332679521	8.1435656351317	-0.19466699709148	0.289328480995827	0.601308522016326
Merged-chr10-25321345-4	chr10	25321239	25321439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-22176.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	6.13785802309329	6.11769286880803	6.28881707867675	6.23750239629614	6.06987447865095	5.97646883017117	6.23889015120682	5.65727950488917	-0.298048100735834	0.228111836147532	0.536965817353833
Merged-chr17-50993817-4	chr17	50993708	50993908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 3 of 21)	intron (NM_028162, intron 3 of 21)	165570.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	8.06379331705309	7.93605782124982	7.90076061862221	8.22563947026961	7.81784328430564	8.05614339830144	8.02023965858967	7.91720499669952	-0.121192222487648	0.478803839224142	0.754690163973656
Merged-chr1-13660610-4	chr1	13660514	13660714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145381)	promoter-TSS (NM_145381)	-105.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	7.91445166916751	8.02619351177946	7.94467125871483	8.20927759579544	8.12266948694835	7.97063773024553	8.37105659081719	7.89574731765195	0.0880379756291564	0.628012652684714	0.841420634067034
Merged-chr2-60883119-4	chr2	60883007	60883207	+	725.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-1669.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	3.46615726645388	3.07788225713208	3.41369120082706	2.99578886237292	3.4389831419426	3.35431736262347	3.28826032949589	3.56419193848181	0.624820973795714	0.259694277920019	0.571558671904673
Merged-chr16-70387545-3	chr16	70387452	70387652	+	938.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 2 of 15)	intron (NM_028803, intron 2 of 15)	73603.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	3.5411001177153	3.46995343353781	3.70341726284288	4.04686141620926	3.48309772742492	3.65745247037531	3.68814561774176	3.64964629247023	-0.339149981504913	0.507305910049971	0.772710503440438
Merged-chr13-63696610-3	chr13	63696520	63696720	+	857.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126476, intron 4 of 4)	intron (NR_126476, intron 4 of 4)	37678.0	NR_126476	75522.0	Mm.54259	NR_126476	ENSMUSG00000113825	1700024I08Rik	-	RIKEN cDNA 1700024I08 gene	ncRNA	3.46562775344569	3.57579456123827	3.46602986012531	3.50461469031595	4.25313765131656	3.99641220290753	4.12251815571853	4.21802469643814	1.8537839475188	3.86069652605575e-05	0.000903651818573239
Merged-chr2-127398266-4	chr2	127398162	127398362	+	967.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26937.0	NM_001081089	215456.0	Mm.440454	NM_001081089	ENSMUSG00000046338	Gpat2	A530057A03Rik|Gm116|xGPAT1	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding	5.05165715415076	4.44095517154239	4.9515583641814	4.69282738360127	5.11201024894461	4.98002250986917	4.8188532122929	5.45838624696346	0.628767171542961	0.078468187320913	0.303218626781502
Merged-chr6-89422767-4	chr6	89422676	89422876	+	947.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-60163.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	4.50997649299	4.4969676114438	4.46807294948618	4.26756332791008	4.7657416239747	4.50836778537673	4.81709285636635	4.5888972609928	0.569490794274512	0.111381347300729	0.368698618619051
Merged-chr10-127511293-2	chr10	127511193	127511393	+	830.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3646.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	2.74885245830333	2.91640175483152	2.68230613255704	2.48623518793235	2.76482573213019	2.85685356173166	2.80257288019831	2.92979354447822	0.604894966990934	0.349057762968705	0.656765556493198
Merged-chr5-125305407-3	chr5	125305302	125305502	+	991.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	35692.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	4.43830709224149	3.61957472188367	4.1619901511728	4.28098171257818	3.89905990624447	3.80833782304263	3.7347129843683	4.47091563332711	-0.377251759850852	0.46166778790731	0.743445883021977
Merged-chr10-77624579-2	chr10	77624479	77624679	+	943.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019803, intron 1 of 5)	MLT1C|LTR|ERVL-MaLR	2258.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	2.99629335344234	2.8921588005432	2.99668721848726	2.9785132954369	2.65176596476712	2.77015233737392	2.98529757012741	3.15969089888327	-0.275163128451177	0.662810366219586	0.860240669860217
Merged-chr10-25058891-4	chr10	25058789	25058989	+	660.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131419.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	3.8902572068591	3.46541632910127	3.70113835102512	3.54670729803097	3.80748552532887	3.53186729844596	3.91589369276874	3.34986418625957	0.0644911475961174	0.900041989191611	0.962949822613742
Merged-chr3-28007855-3	chr3	28007764	28007964	+	735.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	23693.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	3.48393746473318	3.41282072063539	3.22540512916673	3.27343971035253	4.12478684360947	3.82184610645086	3.68522792402374	3.595276129179	1.53177504926108	0.00221009720901619	0.0252548578007005
Merged-chr6-113630486-4	chr6	113630369	113630569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009507, exon 3 of 3)	3' UTR (NM_009507, exon 3 of 3)	6448.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	5.76895369689749	5.92823077857266	5.79362338926103	6.24482082869385	5.47162364199951	5.56118783488267	5.41814128322748	5.47183529451766	-0.814452926387752	0.00301652213242109	0.0321186281022589
Merged-chr9-85588271-4	chr9	85588177	85588377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161057.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	6.1900343184182	6.2543857102196	5.71175701416325	6.17733788297985	6.11156818811548	6.11592421318157	6.12107020756872	5.91204112443543	-0.0607677139100528	0.807446642220327	0.925754680668687
Merged-chr10-53630117-4	chr10	53629986	53630186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027830, exon 2 of 14)	exon (NM_027830, exon 2 of 14)	353.0	NM_027830	71567.0	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	9.01580605970193	9.17796293068682	9.02420760358217	9.01885577788834	9.05634207336421	9.16295842336729	9.24496070663492	8.95034526735956	0.0578228835165808	0.692670824795457	0.875030910251413
Merged-chr13-112396759-4	chr13	112396642	112396842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67328.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	5.34058916325047	5.14752586813341	5.21966374742956	5.03962362745568	5.21517106282325	5.59797628518473	5.09509749308378	5.55072679897604	0.355221357733665	0.245434963396697	0.55650746647639
Merged-chr10-87841774-4	chr10	87841682	87841882	+	979.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16483.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	5.09895156087932	5.403057347702	5.37701177568344	5.30889687513033	5.41691151282261	5.05416822474601	5.00505229336407	5.19553886276714	-0.206745210027177	0.498413101667574	0.767626850238851
Merged-chr2-4290660-2	chr2	4290560	4290760	+	915.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172475, intron 1 of 22)	MTD|LTR|ERVL-MaLR	-110316.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	2.97611090778697	2.83426432747647	3.11248738092843	3.30843075361484	3.26443409605058	3.28864499728015	3.57707191579627	3.54642627453684	1.24156449277639	0.0419147097473247	0.207440670107991
Merged-chr15-100674060-4	chr15	100673973	100674173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_033612)	TTS (NM_033612)	-4573.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	5.91782200005832	5.78556808591719	6.47002865684289	6.779364332149	5.65425853149013	5.6183538901069	5.95761299566866	6.49572500243231	-0.50839251128072	0.137735086477312	0.412828268501288
Merged-chr13-99327586-4	chr13	99327443	99327643	+	992.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 7 of 9)	intron (NM_026873, intron 7 of 9)	17135.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	4.75626343683876	4.75037571638104	4.75705708396247	4.72986755376065	4.64126728895516	3.95317950416331	4.46491363789261	4.60584655625043	-0.64466913842092	0.100142062566805	0.347267459390169
Merged-chr13-18794642-4	chr13	18794543	18794743	+	923.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	77351.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	4.45982517160994	4.34285084342476	4.64843561368096	4.40710695378077	4.36360436755982	4.36693119080159	4.35715449573241	4.23730554288044	-0.30435120837625	0.417496632066185	0.711296288222139
Merged-chr10-62543680-4	chr10	62543572	62543772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16227.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	8.92990678842222	9.20486941589194	9.20830277953855	9.21949857348612	8.58721619705171	8.62808557403733	8.93127663449075	8.65911511418335	-0.54844364949835	0.000611682161568296	0.00907628196336663
Merged-chr11-29806516-3	chr11	29806398	29806598	+	762.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 17 of 41)	Lx8|LINE|L1	19170.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	3.86044866835788	3.56424404532852	4.41584658790715	4.34377220118855	3.66646021441594	3.9287031109657	3.73521005719793	4.18688961257967	-0.546175112081016	0.290847432713142	0.603119162906712
Merged-chr11-21452787-4	chr11	21452693	21452893	+	913.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	58387.0	NR_028259	237694.0	Mm.72926	NM_172792	ENSMUSG00000078962	4932414J04Rik	-	RIKEN cDNA 4932414J04 gene	ncRNA	4.88701955196956	4.63853257833037	4.66008103385926	4.72240617297946	4.89884290112403	4.79419803079571	4.99501976221335	4.95213527848743	0.377858660581418	0.245189200118209	0.556267038796901
Merged-chr10-117724469-3	chr10	117724384	117724584	+	886.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-13726.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	3.80748615423377	4.4534741826811	4.09480033745711	3.58625108484477	4.65887619089779	4.77218695279063	4.43326717978586	4.191867422491	1.22758731168018	0.00852501069732815	0.070239812064489
Merged-chr2-116914166-4	chr2	116914056	116914256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14004.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	6.60379957479073	6.77036783029545	7.15664381504094	7.25271665882484	6.62341505678244	6.93677586086777	6.58755496287829	6.66451820845635	-0.392282181133424	0.0963888141702466	0.34020228114365
Merged-chr7-123371177-4	chr7	123371072	123371272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1257.0	NM_001316713	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	7.39122325422778	7.46039128867841	7.67650259516851	7.64737002272352	7.33053888972306	7.22890287768001	7.43300465111465	7.43629179688318	-0.259588039544506	0.149673270575322	0.432035602283179
Merged-chr10-26836738-4	chr10	26836702	26836902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	64290.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	5.23401785640719	5.02238818638675	5.11024503544369	5.39899787007827	4.93173550870856	5.21716361928083	4.98395646206868	5.03958102906283	-0.328422085544561	0.293703761855615	0.606150948566812
Merged-chr4-95688341-4	chr4	95688229	95688429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 5 of 10)	intron (NM_029347, intron 5 of 10)	108908.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	6.66451261007294	6.4195857565726	6.52477072096944	6.84036891168509	6.67723211715212	6.22758105380765	6.61686912977543	6.60029315479232	-0.121862723147249	0.596366365482871	0.824677461384002
Merged-chr18-25727007-3	chr18	25726895	25727095	+	749.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 1 of 12)	intron (NM_001362322, intron 1 of 12)	26988.0	NM_001146295	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	3.63164478780567	3.54410042386408	3.68403390362979	3.51127070455514	3.61283633588018	3.85172675589865	3.451167402447	3.73160793713936	0.249944765057082	0.601488524994792	0.827119348568531
Merged-chr4-137370606-4	chr4	137370551	137370751	+	939.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-12892.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	4.55546406000276	4.63557660932961	4.28137565957415	3.99166438016888	4.34151087889025	3.87054884898514	4.21789907351312	4.03879991307781	-0.601745288910614	0.182006002024189	0.478680358338744
Merged-chr5-34370539-4	chr5	34370429	34370629	+	923.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243123, intron 1 of 20)	CpG	596.0	NM_001243123	231128.0	Mm.286885	NM_001030306	ENSMUSG00000037210	Fam193a	-	family with sequence similarity 193, member A	protein-coding	3.57399057620071	3.34398809694141	3.46795977926201	3.32843844239966	3.64163569988735	3.63853444561719	3.2787148683395	3.52035287366407	0.357297844894332	0.48107686129508	0.756340723375945
Merged-chr4-132422553-4	chr4	132422440	132422640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175306)	promoter-TSS (NM_175306)	-94.0	NM_175306	100169.0	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	7.80294600708574	7.89988156611192	7.58979812697991	7.55747488394544	7.89305284217816	7.88717368320657	7.77392865253279	7.53880548958797	0.0883011222150341	0.631875522225219	0.843595006967437
Merged-chr19-6909653-4	chr19	6909528	6909728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026306)	promoter-TSS (NM_026306)	-70.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	6.85505162534322	7.11090413693487	6.39829713678218	6.28379446990608	6.76789701338381	6.97837252116909	6.84747429832295	6.60355747442777	0.149779035772045	0.562599385115449	0.805707247859895
Merged-chr1-51915807-4	chr1	51915662	51915862	+	881.875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001161817, exon 1 of 31)	5' UTR (NM_001161817, exon 1 of 31)	216.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	4.08543113423964	4.3845848485738	4.13076790364429	3.8626219433512	3.75723268220604	4.01220432284899	3.97461992141407	3.83363223097798	-0.624031688515217	0.165532009413783	0.456310867048668
Merged-chr3-87329971-4	chr3	87329883	87330083	+	990.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-27898.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	5.13201250521381	5.15314915507309	4.8303854595751	4.92760241216342	5.41797528734625	5.43504527166017	5.40465180351748	5.55470316197284	0.808338301254333	0.00549561827552953	0.0509421928063951
Merged-chr4-99928789-4	chr4	99928704	99928904	+	812.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028132)	promoter-TSS (NM_028132)	-647.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	4.33489039073125	3.91900013975713	3.93295488094915	4.43565428281787	3.96589951670626	3.69218779980823	4.1095741636571	4.16957495113967	-0.496346950678021	0.2824313139223	0.594592679493504
Merged-chr7-25707728-4	chr7	25707637	25707837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11316.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	7.54886181463107	8.30586057212765	8.55592467978254	7.99116328497738	8.00726260130236	7.83959276749147	8.07342431065112	7.70857205655389	-0.303328151408527	0.189402899374296	0.488251009184518
Merged-chr1-166844763-3	chr1	166844641	166844841	+	683.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	154989.0	NR_037988	100503962.0	Mm.216842	NR_037988	ENSMUSG00000102548	Gm16701	-	predicted gene, 16701	ncRNA	3.28527608728337	3.16886397571769	3.17025634358383	3.28962425850451	3.36860890948226	3.15219794674199	3.42647132118007	2.97423303065488	0.0571229021394405	0.918946154234742	0.97021074953684
Merged-chr4-139308087-4	chr4	139307986	139308186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145384, intron 1 of 8)	intron (NM_145384, intron 1 of 8)	2622.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	7.86200655008968	7.9152021128585	7.8065101772696	7.72427909202941	7.09178399497479	7.26934096855704	7.31987138798377	7.08580164052122	-0.843835130648393	1.76419169602648e-06	5.84606148656746e-05
Merged-chr1-54449031-4	chr1	54448900	54449100	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9974.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	4.70791950636281	4.92326374050169	5.10785525533236	4.93917109939804	4.83711576162405	4.48146764259019	4.68668846104971	4.39849409150207	-0.631273068938676	0.0779527008300966	0.30196436965363
Merged-chr11-71863335-3	chr11	71863239	71863439	+	934.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	76783.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	4.10978096790921	4.05910663118325	3.86199159927944	4.31610382333621	3.89695139965992	3.92680979973427	4.37114516538601	3.80408718140446	-0.239139655341838	0.599736236477725	0.826560500894977
Merged-chr1-138928959-4	chr1	138928858	138929058	+	978.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34751.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	5.49122280767902	4.95693534979543	5.19485535887122	5.2114171135316	4.86541365573288	5.20690342591262	5.04178663722882	4.80213332295917	-0.461090340535359	0.155967106768528	0.441850702493124
Merged-chr4-130797211-7	chr4	130797112	130797312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	4675.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	5.41190134143985	5.51815717214174	5.44194733971314	5.74035681773191	5.80305400883416	5.33131045709471	5.29509944279707	5.40907215703414	-0.0970784519043304	0.744550294523654	0.899296531468148
Merged-chr16-57176487-4	chr16	57176396	57176596	+	939.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 15 of 17)	intron (NM_026254, intron 15 of 17)	-9164.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	4.17477893396109	4.40996955966894	4.45391149734458	4.59224545501018	4.5925479986724	4.58357781044806	4.47437480329674	4.36485610985354	0.178408213952888	0.636264504060983	0.846074412168523
Merged-chr7-19361164-4	chr7	19361053	19361253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001010836)	promoter-TSS (NM_001010836)	-63.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	6.2611317721761	6.37459372953462	5.81191729868855	6.07916029603059	6.64299111470654	6.36036918291833	6.42207079577469	6.19960312192361	0.416146674900682	0.0924600945910069	0.332675673981982
Merged-chr13-117152887-3	chr13	117152805	117153005	+	833.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	22880.0	NR_046023	623312.0	Mm.131279	NR_046023	ENSMUSG00000114792	Gm6416	-	predicted gene 6416	ncRNA	3.18282599953949	3.33614198567244	3.11741841161199	3.13994199923995	3.41511964340839	3.29552448883768	3.50561935900577	3.6587372839593	0.994833309326058	0.0577135239775838	0.252163214241019
Merged-chr7-48944973-2	chr7	48944873	48945073	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-14100.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	2.61364970776373	2.61604900887207	2.55345283010739	2.36494995325021	2.29234352400964	2.45548905681521	2.34628221285118	2.42202911428438	-0.922335878870564	0.20527202153038	0.508859472252119
Merged-chr13-100651151-4	chr13	100651075	100651275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001283011)	promoter-TSS (NM_001283011)	-114.0	NM_001283011	19356.0	Mm.248489	NM_011233	ENSMUSG00000021635	Rad17	MmRad24	RAD17 checkpoint clamp loader component	protein-coding	6.47097245651246	6.58342219343839	6.70222741164785	6.22965387135195	6.36526814929461	6.44891886271983	6.27838496159073	6.6253845821451	-0.0894928884181866	0.70061976036466	0.879297715090228
Merged-chr10-117144328-3	chr10	117144207	117144407	+	784.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 1 of 9)	RSINE1|SINE|B4	4167.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	3.47792762768411	3.43953297027432	3.30793589178153	3.56131882408242	3.49835809621531	3.74648983944253	3.17075195055982	3.1109668963558	-0.155315601526482	0.781763369891019	0.915080578622783
Merged-chr7-19006651-4	chr7	19006497	19006697	+	944.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178757, exon 1 of 1)	3' UTR (NM_178757, exon 1 of 1)	2532.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	4.46271531299201	3.90789052768057	3.82388696549479	3.84781998548286	3.9167557931097	4.00043574640181	3.96308691839475	3.97771239180373	-0.177415168494656	0.697747625395933	0.87800480308191
Merged-chr2-61593083-4	chr2	61592988	61593188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164071)	promoter-TSS (NM_001164071)	-9.0	NR_149324	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	7.98493225430077	8.22727666956464	7.98625225673507	7.99830045460604	8.2171086296451	8.32169441143632	8.28317225583539	8.14482620633018	0.241997595682024	0.128546543474993	0.398913247084019
Merged-chr1-152528391-4	chr1	152528295	152528495	+	809.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001346119, exon 15 of 18)	exon (NM_001346119, exon 15 of 18)	96822.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	3.97509381896644	4.1368890754983	3.97565633865499	4.21135292159999	4.08026012916317	4.04561424933511	3.85721365496666	4.15886215669006	-0.129780116183517	0.758281698019425	0.905063463252088
Merged-chr4-49567820-4	chr4	49567714	49567914	+	965.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18268.0	NM_144903	230163.0	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	5.3254463150418	5.05371459199433	4.85035920896008	5.20582097932632	5.51540571823184	5.18162219335489	5.38140540712945	4.96490650959311	0.298693152008426	0.352665137572933	0.659679630621423
Merged-chr19-47919310-4	chr19	47919199	47919399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001738)	promoter-TSS (NM_001001738)	0.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	6.90736697960765	6.79308773923067	6.39515199980217	6.84549359725608	6.97516122050921	7.18603079694484	6.97438796242452	7.15359628471353	0.438332976501858	0.0368265835293379	0.191119892066653
Merged-chr16-21642237-4	chr16	21642169	21642369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 46 of 46)	intron (NM_001081366, intron 46 of 46)	52396.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	8.7432461849834	9.00262025791462	8.76974994435633	8.81285677796475	8.82582541049613	8.85709907890718	8.99407677944043	8.69610133970798	0.0128387064876604	0.933055231663354	0.975886243987449
Merged-chr2-59613104-4	chr2	59612997	59613197	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	1055.0	NM_198294	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	3.81147765782818	4.21145735516173	3.81198934591947	3.95505156604474	4.07268575403561	3.81659584906289	4.04189073297348	4.01145523482108	0.0869299000897467	0.842935713521989	0.940323698985438
Merged-chr3-108210975-2	chr3	108210875	108211075	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289545)	promoter-TSS (NM_001289545)	-448.0	NM_175183	72522.0	Mm.187326	NM_175183	ENSMUSG00000048997	Atxn7l2	2610528J18Rik	ataxin 7-like 2	protein-coding	4.90141357085233	4.79719136664305	4.52000723807802	4.61239396864318	4.88339290681002	4.65214844304224	4.49986535157978	4.89889797808947	0.0859932380894193	0.807985659339883	0.92593795364266
Merged-chr14-46831503-1	chr14	46831403	46831603	+	631.5	f0_balb.idr	promoter-TSS (NM_001360455)	promoter-TSS (NM_001360455)	-631.0	NM_001360454	68755.0	Mm.343809	NM_026832	ENSMUSG00000055128	Cgrrf1	1110038G02Rik|1810009H17Rik|CGR19	cell growth regulator with ring finger domain 1	protein-coding	3.52692642181189	3.81353611433979	4.1037889099125	3.58673523733851	3.67237665327789	3.58170068503023	3.68265536786851	3.79756874616616	-0.251894669841909	0.607848555335496	0.830283203337722
Merged-chr14-31234108-4	chr14	31233983	31234183	+	895.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16210.0	NM_001025379	218877.0	Mm.27812	NM_001025379	ENSMUSG00000021904	Sema3g	AK129018	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	protein-coding	4.00722564103602	3.76181058382297	3.71480691200162	3.79924141306072	3.84287983728055	3.88769592457452	3.80438218534933	3.76641955763589	0.0110580381299746	0.980132270948784	0.992782655212549
Merged-chr6-30326235-3	chr6	30326135	30326335	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21696.0	NM_001169576	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	3.56999937360016	3.23414438734149	3.84788484086086	3.35927747864315	3.5075779356475	3.18651982916926	3.27108403082368	3.75970075212432	-0.216930992309223	0.703229919624872	0.880656761361176
Merged-chr6-118141107-4	chr6	118141012	118141212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1972.0	NM_030165	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	7.00140732126241	7.18069301883626	6.90048060948841	7.06906149670208	6.89937324531433	6.9806468248042	6.74021314056729	6.59683045499061	-0.322440214770397	0.110779704227608	0.367693876724265
Merged-chr7-89337482-4	chr7	89337377	89337577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 2 of 14)	MER5A1|DNA|hAT-Charlie	1310.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	6.68818258348703	7.15323463662766	6.5784542679159	6.47968399379632	6.94754411649158	6.88132825446029	7.09599197717692	6.09776863762941	0.0863454339093051	0.759375101284061	0.905638317712331
Merged-chr6-82702888-4	chr6	82702725	82702925	+	997.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49960.0	NM_025882	66979.0	Mm.195753	NM_025882	ENSMUSG00000030042	Pole4	2400007P05Rik|5830430F06Rik	polymerase (DNA-directed), epsilon 4 (p12 subunit)	protein-coding	5.0107602316492	5.08772007843919	4.47338399134969	4.76302801841457	4.93998455245998	4.65294351619065	4.89005598575059	4.60617876158751	-0.133643180547103	0.710767841516314	0.884203816607274
Merged-chr1-37904979-4	chr1	37904861	37905061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033427)	TTS (NM_001033427)	11532.0	NM_001033427	332427.0	Mm.332981	NM_001033427	ENSMUSG00000061584	Lyg2	Gm776	lysozyme G-like 2	protein-coding	6.07214652118303	6.16716502817007	6.0524670391163	5.8895518718266	6.23370646282466	6.11906213458656	5.60682220991947	6.04814166246353	-0.0166384527316409	0.948977667556395	0.981673120801678
Merged-chr11-6416677-4	chr11	6416575	6416775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008907, intron 1 of 4)	intron (NM_008907, intron 1 of 4)	805.0	NM_008907	268373.0	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	5.80093762086364	6.0040370930954	5.61632268679408	5.74040835624678	6.00682723449201	5.70726383322484	6.16873419680852	6.1961321383172	0.37941921173194	0.143275803363016	0.421483724827882
Merged-chr1-149947164-4	chr1	149947060	149947260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	14130.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	5.95087071651676	5.90170028040892	6.05925984153096	6.37963532110077	5.90332439375808	5.8831749921372	5.82921072346243	5.99168422207461	-0.321404098877514	0.210179839119635	0.514610612726658
Merged-chr14-51894465-3	chr14	51894356	51894556	+	995.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039676, exon 3 of 4)	exon (NM_001039676, exon 3 of 4)	846.0	NM_001039676	214922.0	Mm.281343	NM_001039676	ENSMUSG00000072572	Slc39a2	F730005G13Rik|Gm1789|Gm289|Zip2	solute carrier family 39 (zinc transporter), member 2	protein-coding	4.78280226330716	5.13147545180624	4.55942097363431	4.85304208191576	4.38209659000951	4.41786442125926	4.16627785663579	4.23413068117508	-1.22525280460959	0.00143595255943572	0.0180023011811065
Merged-chr1-77823935-3	chr1	77823868	77824068	+	860.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-308880.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	2.74373539984192	2.60866289737521	2.87194446717898	3.04067521470353	2.75135406880644	2.91590620809641	2.92034790819812	2.92989952432134	0.186298034128582	0.772891966517429	0.911052408089747
Merged-chr14-104868318-4	chr14	104868213	104868413	+	873.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015593, intron 2 of 5)	intron (NR_015593, intron 2 of 5)	229166.0	NR_015593	320249.0	Mm.320725	NR_015593	ENSMUSG00000115432	D130009I18Rik	-	RIKEN cDNA D130009I18 gene	ncRNA	4.40165870199982	4.4521561631366	4.79881117851881	4.60910211012553	5.13794787171292	4.5329674292548	4.47173296497904	4.35243549560388	0.227442738230663	0.575104089628292	0.81272502373833
Merged-chr14-75187034-4	chr14	75186920	75187120	+	920.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	50595.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	4.86852647322018	5.81296474588515	4.9091458731982	4.88412552440321	5.50400271824252	5.53947859077137	4.80556405197335	4.86609711810386	0.0683398145215246	0.868158885491229	0.95061428059965
Merged-chr11-95041440-4	chr11	95041328	95041528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133667)	promoter-TSS (NM_133667)	-57.0	NM_133667	18604.0	Mm.29768	NM_133667	ENSMUSG00000038967	Pdk2	-	pyruvate dehydrogenase kinase, isoenzyme 2	protein-coding	8.39263074731303	8.31094260302985	8.27622277913479	8.19897830696766	8.31615643498057	8.03025877256905	8.12609509870215	8.03014660914468	-0.198230748264025	0.221122316641139	0.529183160605114
Merged-chr10-42502676-4	chr10	42502569	42502769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017472, intron 1 of 3)	CpG	615.0	NM_017472	54198.0	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	4.82824095301847	4.81588940881265	4.82903431449507	4.50716201395393	5.17918775552538	4.96780785545889	5.1467496896735	5.63943264527514	1.01417670630199	0.00267303333272689	0.0292039661688668
Merged-chr11-54988991-4	chr11	54988896	54989096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 19 of 24)	L1MB3|LINE|L1	-26056.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	5.84452193295159	5.57066804878287	5.77229298610883	5.9952209876944	5.96335598380435	5.97286479380812	6.08999618051387	5.93281790797988	0.273371922671983	0.280033252756122	0.592118554434484
Merged-chr3-9885138-4	chr3	9884928	9885128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51349.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	5.88456273296958	5.83696402786946	5.96448837768345	5.93470465601185	7.30581513403435	7.00161094626128	7.06757876301988	6.97865159622212	1.72990546640079	7.51010848858678e-16	1.38847275872498e-13
Merged-chr17-17393490-4	chr17	17393374	17393574	+	953.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025934, exon 10 of 10)	exon (NM_025934, exon 10 of 10)	-9212.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	4.9255930132038	5.06393300126653	4.25763595396227	5.01649222676556	5.38105149910819	4.65352057934679	4.8675107215104	4.9574651988696	0.2816351553812	0.480789989475306	0.756140229807614
Merged-chr6-30401713-5	chr6	30401562	30401762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311087)	promoter-TSS (NM_001311087)	-193.0	NM_029742	76788.0	Mm.277308	NM_029742	ENSMUSG00000029775	Klhdc10	2410127E18Rik|AI593221|mKIAA0265	kelch domain containing 10	protein-coding	6.69182065715828	6.73505407847101	6.79044450964444	6.37703208892047	6.52875084094866	6.68233460484052	6.21368444046581	6.50131199967039	-0.222952536852488	0.333967612370527	0.644720259307362
Merged-chr1-36923209-3	chr1	36923102	36923302	+	838.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 1 of 40)	B3|SINE|B2	16325.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	3.80545219218642	3.81097307873229	4.35017155467376	3.43722592337122	3.50733753068085	3.71620486494061	3.26465732679755	3.3435310211438	-1.30203593727737	0.022262814087905	0.137573382522524
Merged-chr7-19083950-4	chr7	19083862	19084062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126095, exon 1 of 15)	non-coding (NR_126095, exon 1 of 15)	113.0	NM_001190491	13400.0	Mm.6529	NM_032418	ENSMUSG00000030409	Dmpk	DM|DMK|Dm15|MDPK|MT-PK	dystrophia myotonica-protein kinase	protein-coding	5.14715896381806	5.03990387564842	5.40565980824579	4.87120503156545	5.94198031941114	5.46075374748945	5.8548264489448	5.59109526336407	1.09632304517237	0.000299811811931004	0.00506895604784725
Merged-chr13-3743259-4	chr13	3743132	3743332	+	907.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61086.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	4.63969857822319	4.33352376770529	4.52771209202926	4.64648950622591	4.27328295382156	4.24006358517226	4.24863286393661	4.6373607992014	-0.437224963522039	0.256058344231064	0.567645972468634
Merged-chr4-149403182-2	chr4	149403082	149403282	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022022, intron 1 of 26)	intron (NM_022022, intron 1 of 26)	23449.0	NM_022022	63958.0	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	2.91306886365139	3.06780559740491	3.02203734579752	2.59124192338642	2.8467225111262	2.46137013293127	2.51342137371887	2.59267973456473	-1.41861578240172	0.0603239635272547	0.259437658013714
Merged-chr1-9944113-4	chr1	9943965	9944165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024067)	promoter-TSS (NR_024067)	53.0	NR_024067	73824.0	Mm.28311	NR_024067	ENSMUSG00000098234	Snhg6	1110008H02Rik	small nucleolar RNA host gene 6	ncRNA	6.99509359371684	6.72657506143614	7.0916557077197	6.6566503698773	6.8928079100105	6.94315477024068	7.24635545569896	6.97893517683924	0.214384363397326	0.316001178023202	0.62783028667765
Merged-chr7-29179510-4	chr7	29179413	29179613	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026545, intron 1 of 6)	intron (NM_026545, intron 1 of 6)	1160.0	NM_026545	57296.0	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding	4.83677891335016	5.23030046562757	4.17031668018947	4.1815705499098	5.1759310011086	5.24906678830401	5.05093706767339	4.97606665993025	0.856557015428892	0.0435787806445885	0.212473047982819
Merged-chr4-154189121-3	chr4	154189026	154189226	+	961.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162977, intron 3 of 36)	intron (NM_001162977, intron 3 of 36)	18413.0	NM_001162977	230971.0	Mm.275216	NM_172273	ENSMUSG00000057751	Megf6	2600001P17Rik|Egfl3	multiple EGF-like-domains 6	protein-coding	4.47423729329455	4.24694013551381	4.39366633554894	4.63460290867503	4.07174702200251	4.43475025753278	4.19572749435126	4.39087384562939	-0.439187518618477	0.268564055150994	0.580190630132105
Merged-chr1-131979846-4	chr1	131979744	131979944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177628, intron 4 of 4)	intron (NM_001177628, intron 4 of 4)	9235.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	5.13283970049101	4.87034326977557	4.90540387330333	5.34429435754251	4.99472368904651	4.34732016133897	4.80899252134723	4.93732573406344	-0.564225437715411	0.123555184859212	0.389845937457062
Merged-chr11-70015374-4	chr11	70015270	70015470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017366)	promoter-TSS (NM_017366)	58.0	NM_017366	11370.0	Mm.18630	NM_017366	ENSMUSG00000018574	Acadvl	vlcad	acyl-Coenzyme A dehydrogenase, very long chain	protein-coding	5.25369452054825	5.50565759217584	5.15765875435775	5.07993990115619	5.26295819330802	5.48865479579094	5.42801725504248	5.08528241552303	0.128032241487082	0.673793545679089	0.865875007454402
Merged-chr9-119103149-4	chr9	119103046	119103246	+	972.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177117, intron 1 of 36)	intron (NM_177117, intron 1 of 36)	668.0	NM_177117	320256.0	Mm.110648	NM_177117	ENSMUSG00000038060	Dlec1	D630005C06Rik	deleted in lung and esophageal cancer 1	protein-coding	4.84987363679027	4.84286233874244	5.10480950473465	5.37067628552013	4.88853578820715	4.9480457706959	5.56155740767261	5.28475809452638	0.222557010775513	0.532994647104498	0.788398805429988
Merged-chr9-7714281-3	chr9	7714197	7714397	+	830.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18666.0	NR_126562	102722.0	Mm.334941	NR_126562	ENSMUSG00000086381	AV064505	-	expressed sequence AV064505	ncRNA	3.2561915525267	3.39778936825139	3.14129934277988	3.24803733153672	3.00356302382931	3.05407955511308	3.06965532239158	3.3599186303247	-0.543991270337656	0.337761971764497	0.647573070380888
Merged-chr13-40971458-4	chr13	40971361	40971561	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155347, intron 1 of 4)	intron (NR_155347, intron 1 of 4)	-29549.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	6.17544023275162	6.34476473655075	5.88609543293664	5.98422767891848	5.95860908601789	6.06187321857598	5.54214927063706	5.53594046226356	-0.486663874726251	0.0780360841186706	0.302120619418178
Merged-chr6-22418492-1	chr6	22418392	22418592	+	634.333313	f0_balb.idr	Intergenic	Intergenic	-62411.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	3.04448678566317	3.18617276698388	3.4616486041841	3.09751953581887	2.87213200620203	2.879920313371	3.15001102539381	2.84480274903241	-1.09834313191501	0.0754436329217231	0.296604515309872
Merged-chr10-16997003-4	chr10	16996900	16997100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038020, intron 1 of 8)	intron (NR_038020, intron 1 of 8)	98782.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	7.47740806826947	7.61063469513408	7.68546494481919	7.90021599424542	7.83225390662256	7.87921908829991	7.69655631705098	7.60334793913551	0.0913683135788252	0.619022661478815	0.836259425541954
Merged-chr13-42372424-4	chr13	42372322	42372522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	70946.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	5.73659810531944	5.81029176184514	5.80611013695804	5.47416510342499	5.22162876278216	5.56523746639112	5.63637911486965	5.35327749958458	-0.439816008706501	0.123626248132282	0.389983722558397
Merged-chr5-95922990-3	chr5	95922877	95923077	+	980.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	-33962.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	4.3356687451732	4.25192238779653	4.48605006016243	4.14356246558541	3.82809662170234	4.03976022721989	3.78739760892018	4.16374513889035	-0.903682175100163	0.0363868024318126	0.189727947424657
Merged-chr14-21621111-1	chr14	21621011	21621211	+	564.5	f0_balb.idr	intron (NM_017479, intron 5 of 16)	intron (NM_017479, intron 5 of 16)	93465.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	3.50227599570207	3.27308271092977	3.28832029116582	3.19329346560777	3.18570025509219	3.14169701295373	3.53537942189856	3.34357200955274	-0.0108772343989902	0.984032943791386	0.994232698662932
Merged-chr6-99785414-4	chr6	99785300	99785500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59008.0	NM_001037539	50501.0	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	5.71414261140083	5.75362297336498	5.98176293802726	5.88842874200102	5.69803524086532	5.52304554162398	5.61016589769017	5.37302528353757	-0.460334235980992	0.0815961005868817	0.309972772980659
Merged-chr15-79027909-2	chr15	79027809	79028009	+	894.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008197)	promoter-TSS (NM_008197)	-303.0	NM_008197	14958.0	Mm.24350	NM_008197	ENSMUSG00000096210	H1f0	D130017D06Rik|H1(0)|H1fv	H1 histone family, member 0	protein-coding	2.71781911117898	2.62581661508569	2.71816671971968	2.34514081641468	2.77475607914919	2.54566613826657	2.57864132288933	2.94491585774919	0.587090301619106	0.39920116993287	0.697288631090116
Merged-chr2-153092361-3	chr2	153092261	153092461	+	797.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16107.0	NM_001172117	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	3.2400691773421	3.26139128973181	3.24050497937972	3.24463403415557	3.05745582003306	2.96434930512024	3.11398805821656	3.23874249663089	-0.592515052782257	0.288078230960004	0.600021080397441
Merged-chr15-79347467-4	chr15	79347329	79347529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304831)	promoter-TSS (NM_001304831)	-91.0	NM_010755	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	6.63469600337545	7.40291156663387	6.61947403604131	6.46826579813618	7.17141117188518	7.18950823425358	6.6180583273214	6.88133797165306	0.210797505001406	0.445627594656374	0.731601775072563
Merged-chr12-32698911-4	chr12	32698732	32698932	+	991.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121503.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	4.67282112742655	4.46958806629976	4.74528980738619	4.70772622161363	4.51380136868157	4.64777297458981	4.41069380465211	4.335218363798	-0.385087244128052	0.286095581467589	0.597657893149458
Merged-chr6-114922675-5	chr6	114922703	114922903	+	912.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177683)	promoter-TSS (NM_177683)	-982.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	3.20857739268411	2.93059554704271	2.97770331384342	2.64996794792626	2.84340150586743	2.95585442992614	2.83584341151374	3.44668272208095	0.377889248143385	0.565018213878899	0.807206138644524
Merged-chr17-63849748-4	chr17	63849633	63849833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-14248.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	6.05899482629465	5.41834320226495	6.1000824323907	6.10898760268372	5.97853198208174	6.31259414054053	5.85587791103718	5.65235648382418	0.0241071137261128	0.934789607347431	0.97635719558922
Merged-chr7-25765265-4	chr7	25765166	25765366	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 14 of 19)	intron (NM_009465, intron 14 of 19)	-10507.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	5.24364462511923	5.36176283217574	5.69597818544523	4.98959235867374	5.36667586552744	5.51097747403523	5.18661654572314	5.27242232460015	0.0153929806796382	0.961407354188474	0.986179966620764
Merged-chr4-155206647-3	chr4	155206533	155206733	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	URR1B|DNA|hAT-Charlie	15902.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	4.16819535629097	4.08681370827053	3.99841422949154	3.01717124453946	4.84333284485779	4.83497288921973	5.04095733446932	5.09093174209209	2.49038771613755	1.25652490868583e-06	4.30819780709774e-05
Merged-chr2-84538160-4	chr2	84538069	84538269	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31296.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	5.61160802205637	4.72190725853026	4.82581981162968	5.0358092992509	5.33007515383052	4.96430777463961	4.720754167095	5.26190043280106	0.00986393701883346	0.979266159302247	0.992625937440005
Merged-chr8-71308765-4	chr8	71308604	71308804	+	785.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	35990.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	3.07855223034323	3.31650210908972	3.14706292369356	3.41195748733096	3.56750166064042	3.44603302340122	3.42990210018915	3.54347909178891	0.829595428468967	0.123122391844125	0.389032215966305
Merged-chr15-95801421-4	chr15	95801317	95801517	+	923.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	10574.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	4.89013395364598	5.40830863328471	4.928217477307	5.60198188493019	4.98136615008803	4.73058780492291	4.90465993305344	4.80985068686243	-0.768714597043406	0.030927848146859	0.170782791093014
Merged-chr18-11657782-4	chr18	11657694	11657894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 1 of 18)	CpG	445.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	6.812378593291	6.82862931728004	6.79913633918669	6.91169111706272	7.0895576845015	7.22475544632975	7.04808671870684	6.91857592461605	0.318444199344877	0.0960515392292108	0.339609700441701
Merged-chr13-23526581-4	chr13	23526490	23526690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4454.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	5.16320526207141	5.30275801225498	5.19727176466941	5.2969675540746	5.35354996872984	5.82907081474779	5.10506671968038	5.12651760608204	0.247397413557241	0.434870473277248	0.724095756933687
Merged-chr10-117865877-3	chr10	117865767	117865967	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-19893.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	3.80067994136455	3.60644043537408	3.42911120298904	3.52134676672417	4.33784189222094	4.1746626901685	3.73069265520166	4.3954917013635	1.65933682193383	0.000442054082499118	0.00697516460611942
Merged-chr4-82933829-3	chr4	82933713	82933913	+	909.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154662, intron 26 of 35)	intron (NR_154662, intron 26 of 35)	-48662.0	NM_009887	12622.0	Mm.6780	NM_009887	ENSMUSG00000038192	Cer1	Cerl|Cerl1|Cerr1|cer-1	cerberus 1, DAN family BMP antagonist	protein-coding	3.6149671997691	4.07084755506524	4.14812212351724	4.01421153885266	3.80534983868024	3.67100001368896	3.66026184249303	3.78182077672801	-0.709597755395307	0.130389884487987	0.40193242336713
Merged-chr4-150917869-2	chr4	150917769	150917969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2286.0	NM_011612	21942.0	Mm.244187	NM_011612	ENSMUSG00000028965	Tnfrsf9	4-1BB|A930040I11Rik|AA408498|AI325004|CDw137|Cd137|ILA|Ly63	tumor necrosis factor receptor superfamily, member 9	protein-coding	2.96608826673759	3.28418287104103	3.51749003292065	3.07348270644781	3.32365326882528	3.28966118265988	3.72706717186205	3.41140262316872	0.801609470584412	0.158052918044439	0.444930535204605
Merged-chr7-38085955-7	chr7	38085862	38086062	+	883.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21528.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	3.97468154102159	3.50167685339515	3.74078357322092	3.67687776727931	3.54445419207553	3.36314591137866	3.72511816042149	4.13272804682928	-0.0235958417782661	0.964125021519661	0.987279399851659
Merged-chr2-69647179-4	chr2	69647082	69647282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028284)	promoter-TSS (NM_028284)	-73.0	NM_028284	72569.0	Mm.252136	NM_028284	ENSMUSG00000063145	Bbs5	1700049I01Rik|2700023J09Rik	Bardet-Biedl syndrome 5 (human)	protein-coding	6.76770505753125	6.49123445822479	7.17946830953791	7.16913031144195	7.06043936135872	6.91634944265676	6.89906610821622	6.73430871166781	-0.0413650412437116	0.86081637104661	0.947427765875907
Merged-chr4-43523645-4	chr4	43523577	43523777	+	860.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009416)	promoter-TSS (NM_009416)	-123.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	4.31774628151075	3.88533987670605	4.1853206376333	4.39584282149648	4.0842953667467	4.26332106661837	4.25639153288415	4.47358300483778	0.12614250413425	0.763468549335806	0.907197220012242
Merged-chr6-56384427-3	chr6	56384322	56384522	+	774.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14788.0	NM_001159955	18575.0	Mm.5145	NM_011054	ENSMUSG00000004347	Pde1c	-	phosphodiesterase 1C	protein-coding	3.88278183179085	3.95302898744215	4.32730882471745	4.52911852536157	3.68802631853929	3.70711133423301	4.10599101283249	3.7707439573143	-1.05028130248532	0.0297877247239252	0.166438531919638
Merged-chr13-28953037-5	chr13	28952917	28953117	+	976.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009238, exon 1 of 1)	exon (NM_009238, exon 1 of 1)	682.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	4.07647733138022	3.90858038607519	3.98653132220271	4.43739561307601	3.74159380434625	3.59298361085952	3.82189245670554	3.83517106123588	-1.08224081675928	0.0214861631207749	0.134260697460595
Merged-chr2-165300562-3	chr2	165300449	165300649	+	952.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302754, intron 9 of 19)	intron (NM_001302754, intron 9 of 19)	-12711.0	NR_045544	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	3.76779527833262	3.24703816803186	3.67734735875133	3.68472294363304	3.36833786745388	3.34183603236348	3.40322228947863	3.35498529639107	-0.824855177638501	0.118990953643695	0.381688016647344
Merged-chr5-144040817-2	chr5	144040717	144040917	+	861.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_033039, intron 1 of 4)	intron (NM_033039, intron 1 of 4)	9792.0	NM_033039	18261.0	Mm.270533	NM_033039	ENSMUSG00000029618	Ocm	-	oncomodulin	protein-coding	2.87660468051439	3.07733603121796	3.193646673662	2.87935022965055	3.17128757992717	3.24808136068626	3.33738297583677	3.07433759783444	0.812475575947024	0.153370426728403	0.4379840964534
Merged-chr10-99632781-4	chr10	99632681	99632881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038019, intron 1 of 2)	intron (NR_038019, intron 1 of 2)	9139.0	NR_038018	100417125.0	Mm.391428	NR_038018	ENSMUSG00000112503	Gm18409	-	mediator of cell motility 1 pseudogene	pseudo	6.51566692377112	6.01430200137581	6.09358490715872	6.40043273219423	6.24137200199306	6.29235342399622	6.41969909858884	6.49645406294919	0.125806384577019	0.599634167134229	0.826531820835107
Merged-chr2-90478780-4	chr2	90478675	90478875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	399.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.71710294632604	6.6325268927289	6.79966554423027	6.65484564453091	6.06708695125724	6.13201742102736	6.55162419077127	6.5329720671702	-0.536752773955736	0.0200133576220502	0.128082249791397
Merged-chr1-144215484-4	chr1	144215382	144215582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33622.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	5.99069577828413	6.09535067922755	5.62940018594498	6.15947928680233	6.04975414702628	5.96272634578662	5.54439238162097	5.50864509530375	-0.315762202176753	0.268819227915466	0.58040718972897
Merged-chr10-67503736-2	chr10	67503636	67503836	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34133.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	3.33910238250487	3.12175977711676	3.33952760282661	3.65927710653267	3.38856970150106	3.32998003612715	3.38267671199885	3.44767788295284	-0.0253731345212035	0.963052522284462	0.986806397465601
Merged-chr11-117320618-4	chr11	117320494	117320694	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-11121.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	4.46878091911586	4.450754942282	4.42823126206696	4.60325658582534	4.30426207788373	4.04662934377619	4.27712967001915	4.72240261901402	-0.31196249741365	0.433241852494178	0.722830392839943
Merged-chr13-37778887-4	chr13	37778809	37779009	+	882.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-47129.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.24315868508309	3.98538713618893	4.03408246143402	3.72729628410108	4.07198887747557	3.59078902511707	3.59277288636133	4.16140968148518	-0.316777062456126	0.523397888747077	0.782485944910382
Merged-chr5-123145435-3	chr5	123145345	123145545	+	873.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040398, intron 4 of 16)	intron (NM_001040398, intron 4 of 16)	3252.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	3.67644562387247	4.31766487089556	4.49360004890591	4.08826401422722	3.83271955410576	3.85960958656214	4.04042687636004	3.95764702064208	-0.671625373622421	0.151482876741871	0.435160210009269
Merged-chr2-26910725-4	chr2	26910633	26910833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013721)	promoter-TSS (NM_013721)	-74.0	NM_013721	27176.0	Mm.328601	NM_013721	ENSMUSG00000062647	Rpl7a	Surf3	ribosomal protein L7A	protein-coding	7.40466611933179	7.74465443626786	7.23747941120575	6.86086126231729	7.56385472624284	7.65948721445469	7.41731615627584	7.52267121659233	0.266848671904642	0.243622949391245	0.554651503331108
Merged-chr5-66363505-4	chr5	66363431	66363631	+	927.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310626, intron 9 of 15)	intron (NM_001310626, intron 9 of 15)	-25866.0	NM_001201416	11787.0	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	4.01177104657777	3.38520922026729	3.77977101408266	3.70986239340617	3.94869290757431	3.61258626363569	3.99391078637849	3.67140793691913	0.251117812020265	0.612107618517919	0.832680684364583
Merged-chr13-64128267-2	chr13	64128167	64128367	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001321, intron 1 of 11)	intron (NM_001001321, intron 1 of 11)	1063.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	1.97097833386246	1.86025903667432	1.89088128915407	2.09005978868624	2.08394431342441	2.35657176984918	2.24271212140695	2.31206329771851	1.92893445687709	0.0326624652828286	0.177079870238895
Merged-chr9-45300601-4	chr9	45300477	45300677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18523.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	7.52501467044286	7.81730629328894	7.43170365012542	7.18539656567851	7.77063973089823	7.65719146326382	7.22747015055365	7.59191743234549	0.101973282463771	0.638347237615548	0.847153284197798
Merged-chr5-122318332-4	chr5	122318238	122318438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177242, intron 4 of 5)	intron (NM_177242, intron 4 of 5)	33940.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	6.66344097891529	6.65079665655048	5.98832171047997	6.27927332686435	6.22012104576231	6.01861660898455	6.28580309184095	6.05273503945387	-0.405449815073249	0.115819949078026	0.376560001979254
Merged-chr13-45052449-4	chr13	45052352	45052552	+	890.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50356.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	4.02084594246825	4.31798548484052	4.58962647133208	4.17953012281336	4.59514505077918	4.57041650087889	4.25140041035731	3.84445680696766	0.154752686392763	0.729634866730622	0.89273193260024
Merged-chr15-79357177-4	chr15	79357087	79357287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304832, intron 2 of 2)	intron (NM_001304832, intron 2 of 2)	8785.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	6.92573261352555	7.61107914868428	6.16594726755793	6.23703433950411	7.75647418289272	7.78409750015612	7.43541430520073	6.9623196012253	0.867724561577066	0.101164727360212	0.349148360927065
Merged-chr13-115090679-3	chr13	115090575	115090775	+	869.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134058)	promoter-TSS (NM_134058)	-517.0	NM_134058	105083.0	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota mRNA surveillance and ribosome rescue factor	protein-coding	4.0620679436722	4.56980212297574	4.55413825640319	4.36157928867757	4.4264724880889	4.34319212247168	4.04644285317849	4.51353084192792	-0.129595963022755	0.749858356852168	0.901564247164595
Merged-chr4-89276395-1	chr4	89276295	89276495	+	561.0	f1_balb.idr	intron (NM_001040654, intron 2 of 2)	intron (NM_001040654, intron 2 of 2)	5797.0	NM_001040654	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	3.61840012696507	3.33723494471046	3.57198941477878	3.16000258863478	3.0937305107027	3.22946554896173	3.23480725362797	3.41752748109985	-0.654055537507287	0.244435316902859	0.555672492792584
Merged-chr12-36381002-4	chr12	36380905	36381105	+	923.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289502)	promoter-TSS (NM_001289502)	-445.0	NM_001289504	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	3.90081424032881	4.00547555090189	4.21976820548907	4.04452102065719	4.68973475808462	4.64555434054294	4.37554676613421	4.43361254693059	1.19857258727599	0.00208082393242505	0.0241060174295971
Merged-chr9-40548048-3	chr9	40547938	40548138	+	857.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16655.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	3.74380547000816	3.93336840096959	3.68975319562157	3.3698781861047	4.09223046525428	3.96892016040405	3.61904580405616	3.8931485817631	0.638492652638771	0.191702020436974	0.491117547166441
Merged-chr13-9636727-2	chr13	9636627	9636827	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 30 of 36)	intron (NM_001081426, intron 30 of 36)	127083.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	3.4725973821325	3.24992620063798	3.41428682566691	3.84946310137837	3.85458646093523	3.58767580846816	3.46020659225353	3.58113353382153	0.318798869263238	0.558413287383977	0.803138364227774
Merged-chr11-20248498-4	chr11	20248428	20248628	+	816.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172260, intron 1 of 6)	intron (NM_172260, intron 1 of 6)	896.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	3.84613251193711	3.91784321325862	4.36232040980854	3.81238296159722	3.88848364418529	3.91344421138507	3.83110661189914	3.94616170558981	-0.27338460420161	0.54744674848975	0.796848982858262
Merged-chr11-77520783-4	chr11	77520706	77520906	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026185)	TTS (NM_026185)	5689.0	NM_026185	67477.0	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	5.69500328125376	5.73563680281866	5.47973555562867	5.43687401399612	5.81327720014347	6.09495640393988	5.36149796051046	5.56128467021897	0.252224707312281	0.38813234754229	0.688847007122855
Merged-chr11-59219194-4	chr11	59219095	59219295	+	711.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007476, intron 1 of 4)	B3A|SINE|B2	8967.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	4.07200036319629	3.93394066230879	3.57600359722659	3.7197492378378	3.65871520404949	3.56585719063385	3.73089510038407	4.06999477881862	-0.190362907588704	0.69627755265117	0.877172308963588
Merged-chr5-90876279-4	chr5	90876196	90876396	+	862.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14949.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	3.83779185203907	3.94953321540828	3.62978045639147	3.27714859982673	4.30824727778884	3.80613324082086	3.43647584089891	3.38082203731708	0.279848237571568	0.631185829166372	0.843275262012373
Merged-chr2-60874144-4	chr2	60874077	60874277	+	823.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	MTD|LTR|ERVL-MaLR	7261.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	3.70442580596637	3.60798280642122	3.65294311957334	3.66280419048412	3.45067979345233	3.71604088235726	3.9189164296727	3.54034568058641	0.0190327294551856	0.968523611916892	0.988694268692349
Merged-chr7-118243764-4	chr7	118243697	118243897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027879)	promoter-TSS (NR_027879)	-110.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	8.72342823127804	8.8857893818316	8.66409939118263	8.57446691822023	8.63206115709516	8.90249851462767	8.79430207209361	8.58553163110512	0.0225259596462017	0.888295537801921	0.958115954740013
Merged-chr4-122985321-4	chr4	122985223	122985423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10608.0	NM_001303121	16918.0	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	5.77472463949896	6.17237493669737	5.75015425794715	5.92651203268447	6.04580990770491	5.8465520355459	6.2073824583953	5.98232611044961	0.169418076958453	0.503273475577921	0.770326704044058
Merged-chr9-7177012-4	chr9	7176909	7177109	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029851)	promoter-TSS (NM_029851)	37.0	NM_029851	110350.0	Mm.237596	NM_029851	ENSMUSG00000047193	Dync2h1	4432416O06Rik|AI448217|D030010H02Rik|D330044F14Rik|DHC1b|DHC2|Dnchc2|b2b414Clo|mKIAA1997	dynein cytoplasmic 2 heavy chain 1	protein-coding	4.82587380606831	4.68902309179416	5.29322177519771	4.84294102444174	5.15171837737008	5.28680294086092	5.18073550780448	5.20306257587433	0.537523945560303	0.0949472872815851	0.337187694527563
Merged-chr18-82868314-2	chr18	82868214	82868414	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12417.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	3.20599282321296	3.60394491333062	3.49387170590162	3.0217836961382	3.43685197253073	3.38273222015137	3.37307199246754	3.38450275095063	0.180428252679908	0.745100934634718	0.899431814827356
Merged-chr10-117393025-2	chr10	117392925	117393125	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16052.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	3.29731969827889	3.30196397743633	3.29769963634087	3.54229615429183	3.59770173369338	3.64519301141438	3.66307563200104	3.52734598506022	0.752809921434794	0.138836891617133	0.414381792154761
Merged-chr2-170169347-3	chr2	170169252	170169452	+	803.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26677.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	4.1184724446781	3.5198923519027	3.57102498958956	3.17205240320598	3.21214255814823	3.5205717806919	3.32858061146435	3.27505055713638	-1.00023632623136	0.088425214235192	0.324498928454512
Merged-chr1-135700814-4	chr1	135700759	135700959	+	845.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19204.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	3.90943969337952	3.76062555205918	3.85823008037421	3.77350711712282	4.08972611608853	4.13100243026445	4.08001312203272	4.05139229455873	0.733578920166043	0.0778187700023675	0.301658982136941
Merged-chr2-59207348-3	chr2	59207287	59207487	+	912.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	46537.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	3.47723167319005	3.39521359204724	3.57930061814894	3.81443605799533	3.29247985561829	3.1515750982683	3.3548660701906	3.24512995255813	-1.14499094603389	0.0357336814847245	0.187738980986212
Merged-chr16-92867462-4	chr16	92867365	92867565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-41391.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	8.17040984887689	8.129288658505	8.29815990175038	8.17514853249422	8.14434849368442	8.0876756710155	7.98613574468828	8.28726371870122	-0.0787835847294843	0.620228608802104	0.837084318577183
Merged-chr17-73361229-4	chr17	73361119	73361319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033444, intron 4 of 22)	intron (NM_001033444, intron 4 of 22)	38077.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	6.73818713335383	6.31990498326179	6.8621323399676	7.20543310768931	6.22332250023754	6.20949775495952	6.93850973365301	6.8176762002098	-0.344025596967221	0.233225749116571	0.542863819371105
Merged-chr17-51833039-4	chr17	51832908	51833108	+	940.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009122)	promoter-TSS (NM_009122)	282.0	NM_001163632	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	4.65159021004617	4.41526070457234	4.82971601779392	4.40964010162321	4.86444572184921	4.43375057090725	4.59215299694409	4.52970462083136	0.114091345356511	0.760941492951317	0.906431126096988
Merged-chr11-82845510-4	chr11	82845413	82845613	+	936.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164570, intron 1 of 7)	intron (NM_001164570, intron 1 of 7)	-16470.0	NM_026097	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	4.82103121476611	4.92227918836363	4.29437518165976	4.37185436392527	4.43345872349059	4.65562965539988	4.58336933505124	4.52060962472231	-0.169268591043785	0.663734681698373	0.860721584082956
Merged-chr10-35347575-3	chr10	35347472	35347672	+	926.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	864172.0	NM_010237	14302.0	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	4.27552415491165	4.17111205416492	3.99606405983283	4.51120856881175	4.04799062381057	4.06509076516714	4.17107672626152	4.09396514650138	-0.448208777556837	0.28636277427867	0.598054698348964
Merged-chr19-24979249-4	chr19	24979174	24979374	+	920.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-17658.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	5.32145711177727	4.63643143990886	5.29588094067987	5.25048147557228	4.46687560127735	5.0263681486942	4.82705920302311	4.80831247980717	-0.728622634930186	0.0464373075695157	0.221399406265128
Merged-chr7-125599775-4	chr7	125599691	125599891	+	919.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3638.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	4.01133110571672	4.15094057708245	3.95841076013845	4.82661624517671	4.16015342364533	4.18781084470368	4.1877584422259	4.06093052683298	-0.400972096454456	0.39659833552656	0.695284556331027
Merged-chr19-55708116-4	chr19	55707994	55708194	+	924.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5890.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	4.83555336056275	5.01908527973651	5.29121144028017	5.3924015461601	4.54076015016682	4.76066341157102	5.15129489682381	5.01466687685503	-0.553754035024578	0.120589955618941	0.384426390675411
Merged-chr3-61397002-4	chr3	61396903	61397103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32496.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	6.44868612766745	6.36690821586815	6.30541110642644	6.67492013314464	6.63369329093777	6.46284971967334	6.2920814313617	6.39302001005617	-0.0190939887411221	0.933437673190193	0.975970741072679
Merged-chr9-22118271-4	chr9	22118185	22118385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1090.0	NM_001357312	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	5.59094366393433	5.331012604116	5.32893273187438	5.52122596920021	5.73561398195513	5.86653077124596	5.53722260084694	5.76023638764898	0.466126197160636	0.0827405240215187	0.312467516942258
Merged-chr9-103996699-4	chr9	103996616	103996816	+	742.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5828.0	NM_028721	74025.0	Mm.479273	NM_028721	ENSMUSG00000032558	Nphp3	3632410F03Rik|AI550417|C230078J01|D330020E01Rik|pcy	nephronophthisis 3 (adolescent)	protein-coding	3.86549583706533	4.0263099019467	3.86602166951836	3.82765710879609	4.23061451542055	4.04248535081972	4.22504039690778	4.32115160627318	0.833383817826032	0.0420012451373861	0.20765483278697
Merged-chr1-182563424-2	chr1	182563324	182563524	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-1583.0	NM_001145806	170725.0	Mm.189201	NM_130890	ENSMUSG00000038599	Capn8	nCL-2|nCL-2'	calpain 8	protein-coding	2.87992041221907	2.66211058311272	2.71083383342427	2.42670583056155	2.28326713096047	2.47336448470897	2.36241111372559	2.76823950450089	-1.03215742683717	0.175499157034555	0.470255025544444
Merged-chr13-33079667-4	chr13	33079568	33079768	+	809.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4435.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	4.34033489291399	3.9567029317428	4.11849855174754	3.99518688484844	4.33885212633766	4.29219240951743	4.27992558487731	4.29678367318862	0.512186744489747	0.196656115129773	0.497807740730158
Merged-chr9-35282588-4	chr9	35282505	35282705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040715, intron 2 of 4)	intron (NR_040715, intron 2 of 4)	1500.0	NR_040715	71133.0	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	6.03487138479446	5.89703405729067	5.73514913844068	5.98968631588807	5.97549162749234	6.01104276786349	5.8983799092941	5.87872401116281	0.0277829360317574	0.908602269880483	0.966100563913989
Merged-chr10-91082880-4	chr10	91082791	91082991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009684)	promoter-TSS (NM_009684)	-148.0	NM_009684	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	8.91799324095986	9.12437034730143	9.08481156299163	9.0025486910595	8.96352163280906	9.13082322941978	8.93465984850829	8.77878844896368	-0.0959512539369088	0.523890469450346	0.782647016014066
Merged-chr1-91380674-4	chr1	91380580	91380780	+	816.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023343, intron 9 of 11)	intron (NM_023343, intron 9 of 11)	14250.0	NM_173395	227358.0	Mm.389157	NM_173395	ENSMUSG00000047443	Erfe	4832406C22|Fam132b|myonectin	erythroferrone	protein-coding	4.09574342251639	4.09797813206325	4.0470121210782	4.09788103051393	4.37588179542483	4.31530080832592	4.0302469717861	4.27393580889589	0.438215011768807	0.270802968695489	0.582604942081796
Merged-chr6-54886416-3	chr6	54886312	54886512	+	798.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199143, intron 4 of 4)	intron (NM_199143, intron 4 of 4)	69496.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	3.87434430529302	3.97039581021527	3.87489588053299	4.41139775122784	3.75862279461737	3.71174769489171	3.80809805106004	3.82126489156483	-0.842797532608574	0.0741173598279164	0.293284387102027
Merged-chr4-32353039-4	chr4	32352933	32353133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64402.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	6.12771339282768	5.88846016551895	6.46426339176704	6.67152453924472	5.24483561247076	5.54389597173633	5.7206605569396	5.58029460323264	-1.30218131446587	1.04083733994783e-05	0.000285701804555182
Merged-chr10-61122504-4	chr10	61122394	61122594	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 3 of 14)	intron (NM_009163, intron 3 of 14)	25190.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	5.50421819740379	5.17460590723841	5.32005403926546	5.34161190191695	4.70722252890238	5.40495954440633	4.77723321038568	5.1327527322121	-0.591071367610598	0.0773163435762256	0.300748815442531
Merged-chr3-41587789-4	chr3	41587679	41587879	+	962.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130184, intron 2 of 10)	intron (NM_001130184, intron 2 of 10)	22899.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	5.74276732899022	5.20634489424581	5.89331052755351	6.49919212661642	4.86287904228372	5.01151909670062	5.19134908983622	4.95015557092018	-1.62906128710556	9.46133458553557e-06	0.000261940231218917
Merged-chr5-29993793-4	chr5	29993692	29993892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19322.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	5.25080278646374	5.66424239331614	5.47174926687369	5.24349786007145	5.84156756148912	5.9281545909035	5.74865549203764	5.34691948704641	0.551915309536486	0.0588904937254349	0.255517613708182
Merged-chr5-32747841-4	chr5	32747730	32747930	+	892.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177298, intron 3 of 7)	LFSINE_Vert|SINE|tRNA	-1488.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	4.09783690338453	3.88793102778719	3.53582271920747	3.80492656592153	4.35169090469424	4.35663962916434	3.88483845991922	4.26689451654408	1.01479952581721	0.024489663570734	0.146347893820945
Merged-chr15-96461024-4	chr15	96460943	96461143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028148)	promoter-TSS (NM_028148)	-200.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	8.50015010806878	8.89419097845451	8.61347633209243	8.6106722847918	8.78867279971743	9.00900472973539	8.89586705481513	8.78153955757921	0.257777849188449	0.107406773559553	0.361453677613134
Merged-chr1-131020312-1	chr1	131020212	131020412	+	851.0	f0_c57.idr	intron (NM_010548, intron 1 of 4)	intron (NM_010548, intron 1 of 4)	467.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	2.87379313688243	3.57229280262767	3.1648989143347	2.85215761358416	3.65526987034041	3.34440256951361	3.67984015927811	3.34690356419972	1.28839317732611	0.0387434842437248	0.197615368325624
Merged-chr10-111336482-1	chr10	111336382	111336582	+	735.0	f0_balb.idr	Intergenic	Intergenic	37803.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	3.82363757841005	3.49811567337529	3.69359207154498	3.49271616657058	3.16344034276126	3.3070314078209	3.24874840601027	3.25823897559847	-1.39239244665446	0.0102896020966438	0.080616795557183
Merged-chr18-46365142-4	chr18	46365050	46365250	+	853.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-53222.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	4.10791468294941	3.90323890741146	4.25213157244638	4.40736324664747	4.22429630737134	4.12818866135871	4.77140554293099	4.33693933399497	0.468695911231271	0.281584557775997	0.593701988722515
Merged-chr13-54055636-3	chr13	54055543	54055743	+	861.138855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010076)	promoter-TSS (NM_010076)	15.0	NM_010076	13488.0	Mm.54161	NM_010076	ENSMUSG00000021478	Drd1	C030036C15Rik|Drd-1|Drd1a|Gpcr15	dopamine receptor D1	protein-coding	3.6409884066241	3.610766449857	3.44930662945974	3.17091370415351	4.44795441706446	3.82356846847223	4.231633128373	4.09099100006893	2.08977216131826	1.8201385534766e-05	0.000468994043157512
Merged-chr16-33937034-4	chr16	33936934	33937134	+	909.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	30004.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	4.65766457821916	4.6179464802207	4.93219739849266	4.84130111142613	4.16783637107954	4.71243376882341	4.38633659931055	4.49270506419855	-0.731166344641638	0.0515353505575874	0.235860711199741
Merged-chr7-27231834-4	chr7	27231734	27231934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-1179.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	6.33613053695076	6.35643716226993	5.57773141644219	5.71517050952746	6.08881733243752	6.36975085346283	6.02515149140862	5.79712295767038	0.0736507567557265	0.806530182395142	0.925439675100154
Merged-chr13-23709959-4	chr13	23709865	23710065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010424, intron 1 of 5)	MLTR14|LTR|ERV1	889.0	NM_001347493	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	5.69279415957212	5.70665110094147	5.81613428449211	5.76928045298922	5.62676861313475	5.52189671683783	5.95896514398155	6.00499122855591	0.0708177122347614	0.789302701818573	0.918378046795982
Merged-chr6-87811953-7	chr6	87811841	87812041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039394)	promoter-TSS (NM_001039394)	157.0	NR_104477	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	7.2777266920856	7.27639461806966	7.32011782894465	7.05823960357859	7.0163353549596	7.33526396101639	7.22163071226989	7.23138920872472	-0.0388450623035466	0.838503269738221	0.938734869008585
Merged-chr6-120193332-4	chr6	120193235	120193435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347432)	promoter-TSS (NM_001347432)	-488.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	6.64215581494601	6.90667605092492	6.41147077354371	6.70142576623223	6.34577736161714	6.55120541213717	6.62445757562203	6.57651439566456	-0.234202505385937	0.290550060385398	0.602770700908548
Merged-chr19-11234439-4	chr19	11234350	11234550	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045317, intron 1 of 2)	intron (NR_045317, intron 1 of 2)	31701.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	5.14857524286173	4.71169078892342	4.9658388880589	4.95430028880163	4.74832311735442	4.47271157967679	4.80358741788832	4.89480171509655	-0.428259633627736	0.212476564141134	0.517436225002987
Merged-chr17-28080671-4	chr17	28080578	28080778	+	847.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013687)	promoter-TSS (NM_013687)	-39.0	NM_001085555	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	3.88443353344308	4.00568014824515	4.22188041515221	3.86994731994335	4.24784686938888	4.34840836808119	3.97387124791019	4.08562153446839	0.46934251800893	0.265084320268793	0.576956662317123
Merged-chr4-107067455-3	chr4	107067290	107067490	+	849.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025500)	promoter-TSS (NM_025500)	402.0	NM_175471	230582.0	Mm.44608	NM_175471	ENSMUSG00000028621	Cyb5rl	2810410C14Rik	cytochrome b5 reductase-like	protein-coding	3.32053698059175	3.25013330031017	3.01002017325387	3.27057658497772	3.37504576229915	3.25359809637048	3.25232641421966	3.47485821621492	0.44149662215587	0.412196742076701	0.707394257928814
Merged-chr12-100531072-4	chr12	100530955	100531155	+	975.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-10233.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	5.06216987173117	5.2383871534912	5.22421830550691	5.35125761495707	5.1494203507551	4.97592924494748	5.22815509152949	5.02490597696929	-0.248815247709186	0.409903834864009	0.70525942551561
Merged-chr8-80992137-3	chr8	80992037	80992237	+	774.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027554, intron 6 of 9)	intron (NM_027554, intron 6 of 9)	22769.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	3.48500479599654	3.20200053111728	3.24905247452146	3.06059453137851	3.72719147782451	3.60282375819483	3.41669271892762	3.63604510101227	1.24225366372176	0.0167895506414167	0.113588387520711
Merged-chr2-72476176-4	chr2	72476053	72476253	+	974.044067	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025866)	promoter-TSS (NM_025866)	-66.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	4.74236155561955	4.53275392616317	4.6299514134744	4.16053191143054	4.64141844662479	4.68129261336821	4.75559017753946	4.81007033501134	0.456666968598267	0.220049687667267	0.5277618679988
Merged-chr8-45333748-4	chr8	45333642	45333842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133969)	promoter-TSS (NM_133969)	-546.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	7.55601939321401	7.50175779822691	7.57488641914678	7.80276808032711	7.63481853676897	7.03056022641946	7.58039546312702	7.37153393728174	-0.248050498989657	0.223676282608981	0.531783993154169
Merged-chr4-133754118-1	chr4	133754018	133754218	+	1000.0	f0_balb.idr	promoter-TSS (NM_001080819)	promoter-TSS (NM_001080819)	-507.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	5.75054222170637	5.77766592428904	5.70295379511091	5.54370012171641	5.698847545459	5.80109354378095	5.33787642324165	5.69891534967456	-0.0679386089302472	0.801409210847311	0.923365533732052
Merged-chr3-109047916-4	chr3	109047784	109047984	+	898.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-20277.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	4.68491444671793	4.26959468515843	3.96850207406321	4.11063382249444	4.42676619096105	4.54983005945424	4.51875981469118	4.64774444943016	0.600293922868151	0.137221991134872	0.411966936901136
Merged-chr3-16007997-4	chr3	16007897	16008097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1665.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	7.00189046808835	6.91085331472902	6.7453936170227	7.15748478489398	6.87583395970539	7.17931570504924	6.74072245997599	6.77033461884759	-0.102288301286995	0.632653190482704	0.844047525223388
Merged-chr4-19575076-4	chr4	19574970	19575170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025476)	promoter-TSS (NM_025476)	4.0	NM_025476	66302.0	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	8.32758689447461	8.28714197730897	8.33999177197236	8.48906441429905	8.42440182030211	8.47271204966226	8.60659013523041	8.45527311122199	0.154023947722892	0.310939362441206	0.623003793544621
Merged-chr16-20141085-4	chr16	20140971	20141171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145931)	promoter-TSS (NM_001145931)	8.0	NM_001145930	208146.0	Mm.390895	NM_001033237	ENSMUSG00000041215	Yeats2	BC042768|mKIAA1197	YEATS domain containing 2	protein-coding	6.91077723726993	6.82591703831588	6.48036181630388	6.65563670185113	6.86809934444302	7.13929798139769	7.01230068502222	7.07751504660625	0.416171056937062	0.0433361325367633	0.211754141404152
Merged-chr2-62664240-4	chr2	62664151	62664351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145523)	promoter-TSS (NM_145523)	-76.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	7.2644590452936	7.44932961063462	7.42022012872241	7.55193937401436	7.33822870564486	7.60681790779857	7.44928207707125	7.16979435612686	-0.047766932386459	0.800360612197487	0.923040237917604
Merged-chr16-90459215-4	chr16	90459119	90459319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 4 of 10)	intron (NM_015755, intron 4 of 10)	72822.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	6.78845907301232	6.80395381496875	6.40444579131947	6.68216597494056	6.77555898403071	7.16855605538757	6.63979528493216	6.26136806926523	0.099555056714682	0.693196358349485	0.87525985118688
Merged-chr15-97774363-3	chr15	97774240	97774440	+	910.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6674.0	NM_001357630	223864.0	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	4.19043938762571	4.00992237815101	4.15087709443302	4.12042737982419	3.78873152192649	3.64889272289968	3.64390378035251	3.71387638701752	-1.19236368351266	0.00838261844066163	0.069371747237281
Merged-chr15-50703991-4	chr15	50703903	50704103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	185046.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	7.07518604991312	7.58254213547838	6.77245267260004	6.27241098028128	7.2475775348351	7.47796630396754	6.7672557386172	6.53913002068569	0.060799709664301	0.896309459611157	0.961051021717019
Merged-chr9-123851066-5	chr9	123851027	123851227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148925, intron 1 of 18)	intron (NM_148925, intron 1 of 18)	534.0	NM_148925	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	5.05357270223884	4.9565809704461	5.40494411187041	4.97768003416623	5.33679028035158	5.75746493905466	5.29187908395295	5.53308752129536	0.700040431159559	0.0228579986720299	0.13976544003749
Merged-chr13-94941377-3	chr13	94941276	94941476	+	781.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34968.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	3.280313163522	3.71845001765194	3.45192638933012	3.29972660218327	3.16376470546726	3.33069758729014	3.32784251292033	3.44996902987288	-0.45697522442219	0.398624676835466	0.696793179038619
Merged-chr14-52280039-4	chr14	52279941	52280141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172601)	promoter-TSS (NM_172601)	-646.0	NM_172601	76338.0	Mm.32870	NM_172601	ENSMUSG00000022159	Rab2b	1500012D09Rik|4930528G15Rik|A230002G14|D530043M21Rik	RAB2B, member RAS oncogene family	protein-coding	5.68360824988895	5.88285295117573	5.71162404178544	5.66530525838453	6.26780114602055	6.06197318997522	6.02921573587908	6.19046816098607	0.654607869272703	0.00653550306732591	0.0578315773791694
Merged-chr5-115490772-2	chr5	115490679	115490879	+	999.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-6295.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	3.43884709908758	3.46491592847571	3.37964280783163	3.54585875048954	3.51002400357658	3.43145745493572	3.30597775291771	4.03130011412703	0.441021127831683	0.408185114142329	0.704226101285379
Merged-chr1-24633876-3	chr1	24633768	24633968	+	806.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44676.0	NM_026719	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	3.75863071965095	3.90858453182554	3.705470572207	4.1746058348304	3.61182109169336	3.8236466365137	3.84394001806401	3.64758753779095	-0.544597939631647	0.253360983436851	0.564708985127653
Merged-chr4-105253310-2	chr4	105253210	105253410	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95963.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	2.84792509358922	2.7461934953779	2.7872956527481	2.36276532502866	2.98726123991002	2.83122828523973	2.64778481918463	2.72199821567545	0.530751447557147	0.44366412498274	0.730129676133969
Merged-chr15-61987209-4	chr15	61987114	61987314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177353, intron 1 of 2)	CpG	1873.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	6.20981080051936	6.03408932715887	6.43387011984088	6.62884102505406	5.87694067263364	5.7143158940757	5.99852601632163	5.70672392138235	-0.819291858886079	0.00180560698635705	0.0215820822303793
Merged-chr5-92603047-4	chr5	92602969	92603169	+	837.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175096)	promoter-TSS (NM_175096)	18.0	NM_175096	52331.0	Mm.21965	NM_175096	ENSMUSG00000047963	Stbd1	D530019K15Rik|D5Ertd593e	starch binding domain 1	protein-coding	4.62621081354441	4.04689222346499	4.79148275054939	4.5993872137345	4.20210419411074	4.29202148666811	4.19615466497883	4.11084260143926	-0.814615178485619	0.0506080499188399	0.233296839112781
Merged-chr17-43038912-4	chr17	43038807	43039007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 2 of 5)	intron (NM_178589, intron 2 of 5)	22352.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	6.77359131125029	6.75197624042154	6.80347922251623	7.03471487807334	6.95540108428427	6.71352483406414	7.00059586055914	6.94581738542383	0.0741843820147486	0.715114528975887	0.886010584897636
Merged-chr6-58916748-4	chr6	58916633	58916833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361966, intron 24 of 25)	intron (NM_001361966, intron 24 of 25)	-9607.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	6.7076234515511	6.82379486841632	7.66800757244613	7.74123016691341	7.17166905345471	7.16436995142435	7.16684211617162	6.95507614710562	-0.286393025829967	0.298653294860896	0.610840001002951
Merged-chr13-113591516-4	chr13	113591422	113591622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_130796)	TTS (NM_130796)	27042.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	7.95644994191524	7.77454532312294	8.43458606587918	8.14260287326501	7.75782438928409	7.76363439228051	8.24346222134104	7.85801630507143	-0.231185081484788	0.269983218914764	0.581767511754897
Merged-chr1-95647054-4	chr1	95646954	95647154	+	950.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 3 of 3)	intron (NM_001159745, intron 3 of 3)	20540.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	4.90383477923597	5.16949317642783	4.94381993566776	5.51546440400739	5.56051476068064	5.04371282800913	5.2255682663182	5.33582292339188	0.242646008866053	0.475181182336461	0.752111404319515
Merged-chr11-70653915-5	chr11	70653819	70654019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011072, intron 1 of 2)	CpG	731.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	5.20905163781216	5.54994187095865	5.5952758053877	4.75136587791191	5.56653883842975	5.74373042641762	5.51489095428603	5.84488768706595	0.640319971676801	0.052023024494707	0.237459719155364
Merged-chr13-110545617-4	chr13	110545523	110545723	+	988.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150579.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	5.28388144895051	5.90343908079259	5.55082027186712	5.11614124639989	5.78483581321113	6.04969944671094	5.04695904131644	5.17883785812164	0.150244572069358	0.68549251364997	0.871409613223223
Merged-chr17-40880454-4	chr17	40880343	40880543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027834, exon 1 of 2)	exon (NM_027834, exon 1 of 2)	115.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	5.50123877887563	5.32704532195042	6.04446092577949	5.49831222948144	5.70073433526904	5.736317783145	5.8724868718666	5.91975812882803	0.325503464757172	0.256015239536665	0.567603449150608
Merged-chr11-60222969-4	chr11	60222868	60223068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358315)	promoter-TSS (NM_001358315)	-387.0	NM_001358315	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	7.16949634457203	7.23103138261446	6.84226859283291	7.23303084702102	6.68905839390922	6.72416251468964	6.73626680280157	6.6423146970722	-0.61406292258374	0.00226979795164228	0.0257880204948038
Merged-chr12-5277147-4	chr12	5277027	5277227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	98555.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	6.07179744728604	5.92094307652778	6.25317702857313	6.34604455118003	6.28104781628722	6.13755744212711	6.31071178948876	6.21083815764183	0.104536410168442	0.659736180029152	0.858504937170606
Merged-chr10-24823967-5	chr10	24823859	24824059	+	969.904785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134005, intron 4 of 24)	intron (NM_134005, intron 4 of 24)	12236.0	NM_134005	209558.0	Mm.338425	NM_134005	ENSMUSG00000019989	Enpp3	AI876438|CD203c	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding	4.42846116436305	4.9082387951561	4.72968957564145	4.39945352315219	4.82237395009559	5.26230142362407	4.6289382670951	4.64760992932837	0.492165157274833	0.195581089805643	0.49638795965428
Merged-chr18-64886673-4	chr18	64886579	64886779	+	962.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1077.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	4.86161983449922	5.130139463469	5.16324780223073	5.42983248798601	5.52867353581877	5.30558038328723	5.65059805715259	5.28729168595197	0.486972713309619	0.12201187365775	0.387169303861106
Merged-chr19-25628643-3	chr19	25628570	25628770	+	800.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18133.0	NM_177360	240590.0	Mm.62785	NM_177360	ENSMUSG00000042372	Dmrt3	-	doublesex and mab-3 related transcription factor 3	protein-coding	3.5213352024075	3.71048104627731	3.40176628687706	3.66921965847285	3.69197974776812	3.57769184475783	3.61722288235694	3.82428917823247	0.286655407552754	0.551913096711725	0.799182649337697
Merged-chr9-46099331-4	chr9	46099237	46099437	+	995.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	86517.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	5.10023394196447	5.05604030381188	4.9700904234618	5.04298446880711	4.90392816573721	4.87940302723946	4.83929223316181	5.00080501753926	-0.269386642560697	0.385100356346259	0.686512178530615
Merged-chr6-3481901-4	chr6	3481797	3481997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178899, intron 3 of 9)	intron (NM_178899, intron 3 of 9)	12601.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	6.12600969644274	5.92901275377439	6.02175486481062	6.37270245100553	6.03801444911732	5.82089573974865	6.28210426280309	6.3099474737921	-0.0172980088789956	0.946540523561388	0.980924348124396
Merged-chr13-111508786-4	chr13	111508695	111508895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18668.0	NM_001361924	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	6.66917081436253	6.43299158439193	6.17015766141096	5.73321467918424	6.58898195794944	6.64619992008881	6.29656298307177	6.72118216110983	0.429120672439911	0.121737095966372	0.386491862855037
Merged-chr6-34875485-4	chr6	34875395	34875595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_197986)	TTS (NM_197986)	2570.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	6.32202210809084	6.32060206592768	6.95384408100824	6.41531374347807	6.25686856495243	6.25555293035062	6.06827013568415	6.52437940738655	-0.354692493963593	0.166472558132996	0.457775001145587
Merged-chr4-114863407-3	chr4	114863301	114863501	+	768.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41681.0	NR_033617	433746.0	Mm.388908	NR_033617	ENSMUSG00000055198	Gm12830	-	predicted gene 12830	ncRNA	2.88492242498993	2.92792577391661	2.88520421174792	2.98990260410183	3.29396945115339	3.37263275230955	3.19047292182918	3.40906224707467	1.51549856432366	0.00788000404131746	0.0664907026218799
Merged-chr1-152536679-4	chr1	152536557	152536757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 11 of 17)	intron (NM_016846, intron 11 of 17)	88560.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	8.49635172185662	8.62341028270658	8.88130506699648	8.84613651380192	8.49007546213396	8.39695763219216	8.54039198305246	8.52180637124839	-0.296419766165865	0.0653654091706393	0.272195896528224
Merged-chr6-82773526-4	chr6	82773440	82773640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	CpG	914.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	6.1780503664087	6.64699067105127	6.85352432863418	6.61853568321284	6.97933613242557	6.5385273533491	6.4701263874419	6.17472968318316	-0.0173815019357329	0.948133882961314	0.981375373070372
Merged-chr11-106564462-4	chr11	106564364	106564564	+	962.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198292, intron 2 of 11)	intron (NM_198292, intron 2 of 11)	48466.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	6.15595625888999	6.51543540399372	6.41359958195619	6.53278925409128	5.68113480115769	5.48217596285035	5.11504104370518	5.52839665308936	-1.50456872324718	3.88856214237301e-08	1.83422110491696e-06
Merged-chr8-108781389-4	chr8	108781273	108781473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	66729.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	6.47324475109963	6.32475376898177	6.52163962299505	6.75569182572073	6.17695053665821	6.02139560179168	5.91281360351741	6.03292857041346	-0.746374059539665	0.00167530183240602	0.0203529264466129
Merged-chr6-88832112-4	chr6	88832008	88832208	+	932.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9827.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	4.66527499790873	4.77816161632619	5.06764567704766	5.16785774092932	4.95809511100683	4.66434092474947	4.7269637737777	5.23883758536527	-0.0568745534020215	0.874002973821626	0.952777554961398
Merged-chr6-38692255-4	chr6	38692144	38692344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29175.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	5.37636039258855	5.1529738853667	5.40478863000695	5.69383231468992	4.96051364969754	4.68496458268757	5.20414783398069	5.37351411984653	-0.649924060672193	0.0527477646680738	0.239503944910934
Merged-chr11-90247983-4	chr11	90247878	90248078	+	822.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1498.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	3.64099463334941	3.5970986476105	3.34579857897707	3.54711583775621	3.99174413536078	3.58740840906619	3.77469290965375	3.63945739511873	0.702697253335897	0.147617768396106	0.428833774249711
Merged-chr2-154551908-2	chr2	154551808	154552008	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001171640, exon 1 of 1)	5' UTR (NM_001171640, exon 1 of 1)	132.0	NM_001171640	70362.0	Mm.479620	NM_001171640	ENSMUSG00000078129	Actl10	1700007I08Rik	actin-like 10	protein-coding	3.43556790612781	3.41548630108237	3.10722370085138	3.85362370944576	3.4176126877967	3.42811481040862	3.42311904210292	3.99122996273244	0.311116565018382	0.602407988887843	0.827662913718761
Merged-chr14-74904624-3	chr14	74904540	74904740	+	766.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	43237.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	3.47380841893571	3.30010135227202	3.72576022577254	3.37669654139345	3.64771986473488	3.2013199989642	3.46075646803523	3.67705479766235	0.141151461922547	0.790657623555538	0.918840742585233
Merged-chr4-133757534-4	chr4	133757426	133757626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3915.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	5.58057034434328	5.61962314337187	5.38598469368152	5.21878029263735	5.44954824292832	5.64795619607351	5.55335595147388	5.55147825091907	0.175917797976059	0.531644599539419	0.78753680361733
Merged-chr9-65550387-3	chr9	65550291	65550491	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29696.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	6.07511892041033	6.2613530396063	6.05872580246942	5.89507817272017	3.92236936638247	5.05431588219148	4.54959553087072	4.90373126474272	-2.65824598162421	2.77881530526399e-11	2.32972078460996e-09
Merged-chr10-87908985-4	chr10	87908874	87909074	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111274, intron 2 of 4)	intron (NM_001111274, intron 2 of 4)	47863.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	5.89802126612733	5.66095551476622	6.66789495144907	6.64097358896659	5.35409769640052	5.34769789505444	6.214611330988	5.98562736395563	-0.803177746043753	0.0265306762300827	0.15456105773294
Merged-chr7-132323610-4	chr7	132323500	132323700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6372.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	6.06790648122731	6.33161776904829	6.0472295638304	6.12265536613211	6.56309226059676	5.95908808975611	6.27201577327371	6.08600963320147	0.163675260417049	0.516883993131785	0.778569161932649
Merged-chr4-103359304-3	chr4	103359235	103359435	+	892.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025909, intron 8 of 8)	intron (NM_025909, intron 8 of 8)	-23165.0	NR_040673	622167.0	Mm.244115	NR_040673	ENSMUSG00000086136	Gm12718	-	predicted gene 12718	ncRNA	3.97470288135657	3.59352286712282	3.97530943508701	4.16061431090177	3.74785241563624	3.72935016894008	3.7121461952791	3.82973136656366	-0.569785751698303	0.225940720185964	0.534543381939136
Merged-chr14-73449229-2	chr14	73449129	73449329	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60820.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	2.90710133874947	3.91247152797801	3.18500660441039	2.90026013198547	3.33453940528507	3.36219675048244	3.23393567579643	3.18337720326402	-0.0799555296309709	0.90374219423136	0.964332809607505
Merged-chr7-49754959-3	chr7	49754854	49755054	+	910.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4152.0	NM_001146053	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	4.38359258471181	4.32472978238027	4.1305423798186	4.03607342214501	4.47261035895848	3.87436000591052	3.96573389502728	3.97961363262058	-0.271924738801909	0.545589221585001	0.795951941037073
Merged-chr1-123544597-3	chr1	123544506	123544706	+	800.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199021, intron 5 of 25)	intron (NM_199021, intron 5 of 25)	500953.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	3.31581468948168	3.53017482776796	3.485866606402	3.86073276553187	3.16140467471664	3.36630911669554	3.36277498156137	3.31458618142656	-0.982065112326987	0.0733676266380418	0.291717222358011
Merged-chr18-36708978-4	chr18	36708871	36709071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER4B-int|LTR|ERV1	-13046.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	8.05684651175226	8.10903936431745	8.02639957557703	7.75797185497182	7.58462297338375	7.74200543563073	7.73227185812314	7.5957842383068	-0.422088171885417	0.0158810736037615	0.109122399656544
Merged-chr10-128194774-2	chr10	128194751	128194951	+	999.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033264, exon 1 of 18)	exon (NM_001033264, exon 1 of 18)	216.0	NM_001285779	216456.0	Mm.30102	NM_001033264	ENSMUSG00000044005	Gls2	A330074B06Rik|AI195532|GA|GLS|Lga	glutaminase 2 (liver, mitochondrial)	protein-coding	3.84360775265921	4.22240292530953	3.84414136656539	3.88124085021406	3.91166727826214	3.96476411210929	3.77568864136073	4.03656594022406	-0.0905018517664584	0.837989548529638	0.938474063450959
Merged-chr5-113999594-4	chr5	113999502	113999702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-4133.0	NM_010018	13142.0	Mm.20115	NM_010018	ENSMUSG00000042096	Dao	AI987963|DAAO|DAMOX|Dao-1|Dao1	D-amino acid oxidase	protein-coding	6.78121837599939	6.61498178387679	6.64853136337907	7.20873416154264	6.73656019763101	6.29045021365971	6.91835354668316	6.85945900376246	-0.177855804179603	0.477867593803062	0.753993116228679
Merged-chr6-116632325-4	chr6	116632243	116632443	+	821.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178045)	TTS (NM_178045)	-3344.0	NM_026057	67255.0	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	3.47305951213034	3.30096953347354	3.59138040090667	3.30430502336465	3.85514923072233	3.76666880083443	3.87424017831707	4.01681463590093	1.46755384901312	0.00186748146609884	0.0221690232280603
Merged-chr16-4077808-4	chr16	4077716	4077916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026508)	promoter-TSS (NM_026508)	-6.0	NM_026508	68015.0	Mm.123366	NM_026508	ENSMUSG00000005981	Trap1	2410002K23Rik|HSP75	TNF receptor-associated protein 1	protein-coding	7.07240249817306	7.0329466742148	6.9639677271811	6.81710980290406	6.87963383622284	7.11448719075535	6.86370931339198	6.93331494233229	-0.025736960683869	0.895525338305314	0.960919827429015
Merged-chr16-49766520-4	chr16	49766423	49766623	+	732.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	67229.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	3.87318031238419	3.80637518517057	3.71820778587688	3.67676310631655	3.79467131579072	3.94436617921868	3.99435121247826	3.82173837625466	0.35967603561278	0.41432354083496	0.709044594374843
Merged-chr13-112674225-3	chr13	112674120	112674320	+	903.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 2 of 14)	intron (NM_178746, intron 2 of 14)	13454.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	3.62850900137729	3.50988669164433	3.7505982525928	3.83427363041204	4.40455770769737	4.23200719025434	4.13027263477894	4.22964479503111	1.49200769960962	0.000904840608520477	0.0124354412569426
Merged-chr10-25447366-4	chr10	25447266	25447466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 3 of 16)	intron (NM_001358754, intron 3 of 16)	38998.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	6.09284197616597	6.20142446983473	6.28517764343612	6.82974234468364	5.79539856835192	5.7459371228001	5.88661458147154	5.78813517717422	-0.936513812966899	0.000667660995570305	0.00972048312614006
Merged-chr1-184025375-3	chr1	184025265	184025465	+	763.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8633.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	3.43490797765013	3.50473647051711	3.59732631789856	3.5152677887024	3.73248348339571	3.1456582838694	3.47817980195646	3.64487053026412	0.0448783919803557	0.932210961378999	0.975533594342612
Merged-chr4-45489849-4	chr4	45489747	45489947	+	965.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	40981.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	4.38400837383602	4.20936335105675	4.65550293244148	4.74096160535776	4.80956423384511	5.14868194305589	4.85565863056302	5.09529376972149	0.927206701232769	0.0125775939466167	0.0928597198969228
Merged-chr10-80171126-4	chr10	80171045	80171245	+	734.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007705, exon 7 of 7)	3' UTR (NM_007705, exon 7 of 7)	-1799.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	3.76601529069751	3.6729552607541	3.86821994480837	3.63198273390412	3.89090198165525	3.83156593700741	3.98889812136897	3.91380719799752	0.522789331584437	0.234536358516872	0.544436730354905
Merged-chr10-79940915-4	chr10	79940804	79941004	+	974.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001288625, intron 3 of 8)	intron (NM_001288625, intron 3 of 8)	13563.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	5.3699862629209	5.68719039572393	5.70799353693424	5.72413261301417	4.88905075699629	4.96535314600379	5.31422654785198	5.55959388882087	-0.767201687029337	0.0152319684067862	0.106033865939035
Merged-chr14-51163580-4	chr14	51163479	51163679	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019398)	TTS (NM_019398)	1319.0	NM_019398	54159.0	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	5.10904404130718	5.38357030589844	5.07395956232371	4.98603441935688	5.51961723763707	5.48129495222775	5.44955078724816	5.62325237720605	0.686659914455992	0.017057717545096	0.114878538853476
Merged-chr4-141363372-3	chr4	141363298	141363498	+	885.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4794.0	NM_001085513	277743.0	Mm.294614	NM_001085513	ENSMUSG00000006218	Fam131c	Gm693	family with sequence similarity 131, member C	protein-coding	3.87824594261039	3.8589926027769	3.59686901251588	3.82761411803033	4.33012553624207	4.05062167307968	3.91190432772676	3.82487732327363	0.703246328553094	0.120559010991406	0.38436217160966
Merged-chr8-68183975-4	chr8	68183873	68184073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92555.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	6.71031002303136	6.94015345170966	6.27938007563896	6.55921918776709	6.69186619802685	7.05129034992454	6.72021872746901	6.39272365960927	0.125280975194175	0.612148720190161	0.832680684364583
Merged-chr19-55791004-3	chr19	55790895	55791095	+	787.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	49185.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	2.8933059805629	2.74106055641393	2.89368734320487	2.83860014060342	2.64063756953597	2.74096854872867	2.82390225102771	2.83262387973469	-0.396590710519594	0.525826690825084	0.783367294725902
Merged-chr3-65319810-4	chr3	65319723	65319923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357358, intron 8 of 13)	intron (NM_001357358, intron 8 of 13)	-17138.0	NR_126080	102637797.0	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA	7.45457535513759	7.41158590457853	7.74050712620281	7.58801261552135	7.43241240360545	7.30172138856712	7.13609536104873	7.10663765075925	-0.398481817633424	0.0359644841972753	0.188408538512677
Merged-chr9-13827572-4	chr9	13827474	13827674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310721)	promoter-TSS (NM_001310721)	-142.0	NM_001358259	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	9.30186398319643	9.64715553130369	9.54023866192523	9.39827315269365	9.57062650494427	9.64520192379533	9.56642381508025	9.39184970098847	0.0841367975153362	0.573147002187392	0.811692154196247
Merged-chr17-24209104-5	chr17	24208984	24209184	+	865.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010947, exon 1 of 6)	5' UTR (NM_010947, exon 1 of 6)	303.0	NM_010947	18209.0	Mm.259542	NM_010947	ENSMUSG00000036473	Ntn3	Ntn2l	netrin 3	protein-coding	3.47857930149426	3.41598680300806	3.47901047127903	3.62389224837112	3.78428270397404	3.92077284683599	3.58111537912313	3.93234753981731	0.91067148581293	0.0588244023879163	0.255339805925692
Merged-chr2-144258071-1	chr2	144257971	144258171	+	802.666687	f0_balb.idr	intron (NM_024225, intron 4 of 12)	intron (NM_024225, intron 4 of 12)	8131.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	3.73622020292214	3.35383936433383	3.78454245043715	3.81190336621878	3.76949720790589	3.45412247477845	3.51235288331743	3.63340410954663	-0.259564997755367	0.607850937890431	0.830283203337722
Merged-chr3-97610131-4	chr3	97610011	97610211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026539)	promoter-TSS (NM_026539)	79.0	NM_026539	68058.0	Mm.31761	NM_026539	ENSMUSG00000028089	Chd1l	4432404A22Rik|Alc1|Snf2p	chromodomain helicase DNA binding protein 1-like	protein-coding	6.8482965593201	6.87776866521739	7.42822420085536	6.76032118070055	6.50444916432044	6.78765206563873	6.73042339170103	6.78889440706956	-0.416411896607844	0.0766044795217631	0.299109526487476
Merged-chr2-167421541-4	chr2	167421441	167421641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148929)	promoter-TSS (NM_148929)	-169.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	8.18711934761309	8.65295387317898	8.59900536668358	8.13459924140392	8.5844809886658	8.49630602909699	8.34511950874636	8.43597577669954	0.0754479901415707	0.683891276556164	0.870485898434192
Merged-chr5-120167940-4	chr5	120167812	120168012	+	904.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028762, intron 21 of 23)	intron (NM_028762, intron 21 of 23)	-28649.0	NR_045793	100503427.0	Mm.446834	NR_045793	ENSMUSG00000097368	Gm10390	-	predicted gene 10390	ncRNA	4.48296723225711	4.8076878703931	4.44326143798773	3.95304163333525	4.20648609542139	4.48835436941904	4.29440139817991	4.26481749786482	-0.316428606576334	0.465008850996806	0.745722932051402
Merged-chr8-107293402-4	chr8	107293300	107293500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133957)	promoter-TSS (NM_133957)	-70.0	NM_018823	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	7.6263367309098	7.39597902123608	7.53251074352536	7.29361160359779	7.69241514724912	7.74498137852973	7.22663419388548	7.32289074713316	0.0783998824247845	0.700249018249913	0.879054781621322
Merged-chr13-23799582-4	chr13	23799486	23799686	+	979.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7441.0	NM_144836	218103.0	Mm.24030	NM_144836	ENSMUSG00000036110	Slc17a2	C730032N17Rik|NPT3	solute carrier family 17 (sodium phosphate), member 2	protein-coding	5.63947369017379	5.17473739203645	5.88483556391571	6.03041047963641	5.2422145271471	4.94729215205722	5.53630865126945	5.23604005144092	-0.820640983117231	0.0141190167922163	0.100578212195073
Merged-chr16-23108132-7	chr16	23108042	23108242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030705)	promoter-TSS (NR_030705)	674.0	NM_001347179	13682.0	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	6.01591435096006	6.29089700755926	6.10220936246495	5.62464177328366	6.10165255647064	6.44960118906378	5.89537818867925	6.32337306252949	0.29086957904063	0.291034823645909	0.603331333534854
Merged-chr7-63916550-4	chr7	63916458	63916658	+	966.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256311)	promoter-TSS (NM_001256311)	-299.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	5.13201892533459	4.84054674468547	4.97386984826738	4.73360256549857	4.96148986207955	5.24265339146081	4.68964575879023	4.74920046718269	0.0246912977329168	0.942844693475767	0.979318562294414
Merged-chr2-70992940-4	chr2	70992839	70993039	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 3 of 9)	B4A|SINE|B4	25435.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	4.81156230315581	4.32456622622423	5.12315634860329	5.37624004410037	5.13307762578826	4.9094585347156	4.90088320511546	5.05688546674175	0.0466020978847678	0.905514816537441	0.964916319169902
Merged-chr4-95212964-6	chr4	95212856	95213056	+	988.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160734.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	4.82251199413454	4.78065469741863	4.78865221473818	4.76846066668588	4.06110901094699	4.77376366341005	4.30995358188305	4.78540269647288	-0.614568510158411	0.11915186624482	0.38190374944411
Merged-chr10-3832156-4	chr10	3832050	3832250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159942, intron 2 of 16)	intron (NM_001159942, intron 2 of 16)	-40517.0	NM_001033253	213783.0	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	5.53504810467955	5.25090028400937	5.59356946413122	5.59444482764707	6.09116399583134	5.95242992723402	6.2248057527161	6.01567895184099	0.924338571344247	0.000330460365542625	0.0054944728705813
Merged-chr4-40239823-4	chr4	40239735	40239935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172689)	promoter-TSS (NM_172689)	-10.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	6.48878797003515	6.74016417121792	5.9916446308175	6.05008659444659	7.01696031837318	6.63275010591672	6.24261100298562	6.16876839776811	0.320548479658033	0.28532779660888	0.597040378146234
Merged-chr2-59889905-4	chr2	59889815	59890015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9A3|LTR|ERVK	-7309.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	5.29578553670952	5.35862252664506	5.20028081090184	5.66499649620546	5.31443245393421	5.34285887949288	5.4154703610129	5.38255622440413	-0.0943709268412697	0.749076642633579	0.901187172003694
Merged-chr11-101580044-4	chr11	101579958	101580158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008676, intron 23 of 23)	intron (NM_008676, intron 23 of 23)	-2184.0	NM_001359326	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	6.39808044418278	6.37170769117116	5.8824982082562	6.13124016603709	6.08689628546379	6.01060261587511	5.69722576831187	6.3277689942895	-0.244855657177418	0.355980938223769	0.662666192479264
Merged-chr7-133638243-3	chr7	133638194	133638394	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178115, intron 1 of 24)	CpG	619.0	NM_178115	214764.0	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	3.01579904612511	3.30275600200917	3.27154178283903	3.33235603353836	3.17098681440553	3.4416590822154	3.31537364843989	3.43285514701193	0.348146972170402	0.522930720839893	0.782264002746054
Merged-chr10-80943103-4	chr10	80942988	80943188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12997.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	4.91777367181636	5.14870192690089	5.29876648138943	4.67948432350764	5.29669775163554	5.35608953940538	4.65457757652222	4.75873834075179	0.0711764747883063	0.849108857929882	0.943016077779251
Merged-chr6-46376522-4	chr6	46376426	46376626	+	823.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 11 of 23)	intron (NM_001004357, intron 11 of 23)	-867870.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	3.83645758207313	3.54801072545588	4.02532113845857	3.8976256476931	3.95511010881197	3.79363224422224	3.6613478914863	4.06570166848067	0.119365018372575	0.79806830570453	0.921955533143952
Merged-chr4-129515182-2	chr4	129515114	129515314	+	932.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008228)	TTS (NM_008228)	1633.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	2.86070080744691	3.45020261757769	3.0643708126486	2.63059681343827	3.03281306212849	3.23997076058886	3.22728218874372	3.23901610539886	0.569074594711984	0.381826932605527	0.684017296351366
Merged-chr10-79681920-4	chr10	79681829	79682029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177613)	promoter-TSS (NM_177613)	-266.0	NM_001359818	216150.0	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|E2-CDC34|UBE2R1	cell division cycle 34	protein-coding	8.45078228090496	8.8480807843724	8.68817317109721	8.33338315258131	8.70298737255229	8.97740864251588	8.69076936340867	8.30949765242129	0.123114615881505	0.534336900235188	0.789138445360665
Merged-chr3-68732094-2	chr3	68732033	68732233	+	677.75	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29362.0	NR_153374	102639225.0	Mm.109095	NR_153374	ENSMUSG00000102936	Gm35584	-	predicted gene, 35584	ncRNA	3.18588895562568	3.00821804188957	2.96713834421064	3.55554515265466	2.57186104277095	2.73605167541863	2.54459513919507	2.54912711327946	-3.40344128143728	7.16063891368029e-05	0.0015324327036586
Merged-chr11-40857680-4	chr11	40857554	40857754	+	703.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-102368.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	4.07355903326724	4.14952444201183	4.07415031925153	4.26449096081982	4.21366205304968	3.92898111126719	4.27434994655465	4.07175900625005	-0.0473367156309468	0.908420203849735	0.966039998613106
Merged-chr2-131089832-4	chr2	131089731	131089931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3066.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	6.88841597262159	6.79217661104496	6.7816204993615	7.10394522426568	6.62627738666803	6.44584936434198	6.85467901460946	6.54535110505755	-0.398763920855056	0.06399142913314	0.268748226610458
Merged-chr14-14869448-3	chr14	14869340	14869540	+	985.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195229, intron 21 of 34)	HAL1|LINE|L1	48625.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	4.23667698016359	3.46526145019708	3.90618873511124	4.14727022142972	3.75262062912737	3.50662718798388	3.84143030007635	3.58343924635734	-0.85321602239967	0.0994366885798412	0.345819723638386
Merged-chr6-34781144-2	chr6	34781044	34781244	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178630, intron 1 of 18)	intron (NM_178630, intron 1 of 18)	712.0	NM_001289656	76223.0	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	4.33437729066046	4.25662068440035	4.1607885556795	4.12935519263213	4.06274757409023	4.13626046649565	4.09579110603661	4.37228914660668	-0.120784404703516	0.763329179685696	0.90713960302321
Merged-chr18-6760969-3	chr18	6760858	6761058	+	827.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4209.0	NM_181070	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	3.13867315084644	3.42246284881415	3.13898721832961	3.3992164766737	3.96215618723085	3.51018053673206	3.49270421431553	3.55722878801957	1.19212608757054	0.0293312494260886	0.164780505359081
Merged-chr3-52242675-4	chr3	52242573	52242773	+	783.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	-25664.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	3.75868657308385	3.70344445511595	3.53982564231901	3.81315349473862	3.81170790998973	3.71452554317376	3.88501303710376	3.65216069280253	0.163802161153649	0.722773833466386	0.88928524667289
Merged-chr12-41484348-3	chr12	41484233	41484433	+	834.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271708, intron 1 of 2)	intron (NM_001271708, intron 1 of 2)	1724.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	3.92663894823912	3.882885673912	3.56429696570164	3.92889272212563	3.73187781329749	3.79650240237571	3.5516225927067	3.7818731997025	-0.362495579252488	0.438651898746148	0.726638431397744
Merged-chr17-66077104-4	chr17	66077006	66077206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025572)	promoter-TSS (NM_001025572)	-60.0	NM_001025572	106585.0	Mm.34706	NM_001025572	ENSMUSG00000034647	Ankrd12	2900001A12Rik|AI447928|ANCO-2|AV347965|GAC-1|mKIAA0874	ankyrin repeat domain 12	protein-coding	7.82920608498686	7.90071787426546	7.54156157632621	8.04707849222713	8.31515218560418	8.26209025131635	8.26164196555249	8.22912234674492	0.531546028683596	0.0023606694142224	0.0265618223577199
Merged-chr1-119504328-4	chr1	119504235	119504435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022327, intron 1 of 4)	intron (NM_022327, intron 1 of 4)	447.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	6.66192322179694	6.3192712666852	6.58589409774815	6.74295341644598	6.68826281982812	6.41846555683518	6.75656122919527	6.7024589365419	0.081319833985828	0.712252134823931	0.884804781356341
Merged-chr8-41284619-4	chr8	41284574	41284774	+	995.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 16 of 37)	RCHARR1|DNA|hAT-Charlie	44915.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	5.01872556751168	5.47630961364964	5.4050964500915	5.24316631575856	5.7538707592897	5.8015013045375	5.96826915196078	5.6974372648795	0.870606094637467	0.00157877770860238	0.0194691300278255
Merged-chr8-70585455-4	chr8	70585342	70585542	+	879.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 7 of 11)	intron (NM_007924, intron 7 of 11)	-9039.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	4.27387865256097	4.01677916748001	4.18118632129275	4.20592979605811	4.64547511926519	4.35561424150513	4.34171054958272	4.40009391527761	0.66424874439116	0.085151944106596	0.317664058153218
Merged-chr10-91195267-4	chr10	91195159	91195359	+	977.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-23640.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	4.94120427067364	5.13532435133847	5.01151340354966	4.80199165425379	5.04309437091305	4.70744580666503	5.36086947238128	4.9025377049444	0.117405343541266	0.728054120320746	0.891779294267982
Merged-chr8-84903217-4	chr8	84903123	84903323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010635, exon 2 of 3)	exon (NM_010635, exon 2 of 3)	1295.0	NM_010635	16596.0	Mm.4847	NM_010635	ENSMUSG00000054191	Klf1	Eklf|Nan	Kruppel-like factor 1 (erythroid)	protein-coding	7.01437690819901	6.7827806226546	6.22284157096325	6.71627147853131	6.63600814114456	6.92270075242064	6.6688751212629	6.54097004522083	-0.0272401659858163	0.9097866049275	0.966503996181226
Merged-chr11-105599600-2	chr11	105599500	105599700	+	733.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_181071, intron 1 of 25)	intron (NM_181071, intron 1 of 25)	9614.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	3.23679349484041	2.81935220464837	2.92312767586406	2.78413342087305	2.70125450487955	2.90703596902264	2.72305955931143	2.58583837505257	-1.00567854902099	0.132529781633371	0.405438489142637
Merged-chr14-74939535-4	chr14	74939443	74939643	+	803.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	8334.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	4.00318801923675	4.00948894359478	3.73324320970467	3.84617858143252	4.53073488984602	4.12746742175586	3.93748261019186	4.00139283630669	0.745012598561262	0.094123066008178	0.335616957989986
Merged-chr9-70832355-4	chr9	70832230	70832430	+	874.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	102478.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	4.14346961068307	4.09767043858452	4.73507500079194	4.3165220011598	4.14547453278736	3.94851815053667	3.81157156255875	4.14156498466147	-0.813323836554672	0.0684621107745178	0.279402819954097
Merged-chr4-16168611-4	chr4	16168497	16168697	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 1 of 6)	intron (NR_045765, intron 1 of 6)	4487.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	5.59111080226289	5.66705266903931	5.30203734710369	5.08869080597164	5.8264474626883	5.44718584225497	5.53776726376638	5.73467032965737	0.404422274912564	0.177829211553928	0.473486157528038
Merged-chr15-83410407-4	chr15	83410323	83410523	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	22427.0	NM_011862	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	5.35090948811897	5.48522702294449	5.40728057382332	5.50612957159156	4.92607406078394	5.01549011772932	5.0772180579047	5.13249210248395	-0.763493002954589	0.00903913965330516	0.0733555431558122
Merged-chr13-23538420-4	chr13	23538309	23538509	+	907.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2991.0	NM_145073	97908.0	Mm.261657	NM_145073	ENSMUSG00000099517	Hist1h3g	H3.1-221|M32460	histone cluster 1, H3g	protein-coding	4.67865215723717	4.21236255410855	4.43542055488758	4.5493029688618	4.80818436538104	4.65365225262608	4.45925649691226	4.78255198702361	0.450040522176443	0.221274105617094	0.529396308148268
Merged-chr10-25298397-4	chr10	25298297	25298497	+	896.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 1 of 7)	Lx5c|LINE|L1	766.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	4.4314599908352	3.9242025301409	4.35310788537465	4.41759336940063	4.12822430762215	4.3045557678978	3.90550291610147	4.30887539209278	-0.326523250911802	0.443126245441266	0.729779110682633
Merged-chr15-76702157-4	chr15	76702068	76702268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027122, exon 1 of 5)	exon (NM_027122, exon 1 of 5)	626.0	NM_027122	69572.0	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding	5.27001163654594	5.21677177824812	5.13996170385806	5.1457485326676	5.41521480273024	5.47583758113474	5.70467586247401	5.17044343221082	0.474779253286459	0.103892790182281	0.354237415616691
Merged-chr1-24679707-1	chr1	24679607	24679807	+	888.0	f0_balb.idr	intron (NM_001310483, intron 1 of 15)	intron (NM_001310483, intron 1 of 15)	789.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	3.92272105165255	3.67905707063091	3.65202053265598	3.91465369895001	4.05667418070835	3.99504006238391	3.69687529459163	4.29835172821077	0.618057640796483	0.180975600610711	0.477399187483592
Merged-chr1-155065965-4	chr1	155065848	155066048	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	17316.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	5.10789828616277	5.20357854658199	4.96689904653876	5.45024295709635	5.21974185526018	4.85707269406251	5.35269677844307	5.29202766731535	-0.0302260852086456	0.925412053681073	0.972493534450934
Merged-chr1-135154605-4	chr1	135154502	135154702	+	865.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026823, intron 5 of 6)	intron (NM_026823, intron 5 of 6)	7768.0	NM_026823	68724.0	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	4.4466757539791	4.21714488824212	3.95162943481821	3.92144125574512	4.13114588612988	4.12984408553411	4.26888178132182	4.40661167437124	0.243572641550974	0.564311359791627	0.80668202917294
Merged-chr13-67526178-4	chr13	67526072	67526272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133228)	promoter-TSS (NM_133228)	59.0	NM_133228	170763.0	Mm.491205	NM_133228	ENSMUSG00000097333	Zfp87	2210039O17Rik|4631412O18Rik|KRAB4|Mzf22|Zfp72	zinc finger protein 87	protein-coding	7.9265081379308	7.95668865070568	7.6286249737288	8.21361462159726	8.11918245051666	7.96079180615193	8.19371930023236	8.12143635142101	0.18375341885216	0.32143042971923	0.63315055191495
Merged-chr10-119065657-4	chr10	119065588	119065788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15189.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	8.06040968620811	7.73028474102081	7.92947035875953	7.96316343801438	8.40766767796307	8.37102296450876	8.42053082957592	8.30679948347372	0.577844581342555	0.000279845526478286	0.00479285965572616
Merged-chr2-103683082-4	chr2	103682989	103683189	+	971.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 2 of 16)	intron (NM_178890, intron 2 of 16)	78181.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	4.88191614001473	4.44448279108674	4.68311924422758	4.76199438642584	5.33889035094866	4.98320636507165	5.315753526771	5.14534901631351	0.988178068393126	0.00257832841223995	0.028373970014661
Merged-chr14-75147907-4	chr14	75147813	75148013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	L1_Mus3|LINE|L1	11488.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	6.26123694458859	6.44103001957515	5.74729999077051	5.01164573047214	6.53416975255424	6.16442929669086	5.79437441817206	5.76934230167329	0.207732543857177	0.581722072367168	0.816420227529328
Merged-chr3-79197222-4	chr3	79197109	79197309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15710.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	7.89275812497104	7.9086059234459	8.10266898402774	8.10960472106112	7.85538140161577	7.89076971132646	8.11259846151429	7.8364292793083	-0.108742357542754	0.518993400261868	0.779800557895194
Merged-chr2-45089698-4	chr2	45089597	45089797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	20580.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.79693181717975	8.06328171008274	7.55316597074715	7.35245315395384	7.85768643021399	8.19986236159419	7.84898358440007	7.57565825543559	0.226446352766781	0.310114282515428	0.622247970771993
Merged-chr7-19024261-4	chr7	19024166	19024366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026605)	promoter-TSS (NM_026605)	-111.0	NM_001360713	68188.0	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	8.12845427186025	8.47066927916456	8.31966618484641	8.14449773779263	8.38457485456766	8.36995636109015	8.36048254413464	8.27509740406841	0.0992362772884471	0.538766782458733	0.791751031472413
Merged-chr18-6136099-4	chr18	6135996	6136196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029277)	promoter-TSS (NM_029277)	2.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	8.359964746888	8.37415530311496	8.23360042522936	8.01207476961469	8.29825081773879	8.52318712051322	8.08512912349049	8.1182670804593	0.0260509890404641	0.885599147899726	0.957045685546015
Merged-chr15-98761876-2	chr15	98761776	98761976	+	770.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007478, intron 1 of 4)	intron (NM_007478, intron 1 of 4)	1116.0	NM_001355510	11842.0	Mm.221298	NM_007478	ENSMUSG00000051853	Arf3	5430400P17Rik|AI854770	ADP-ribosylation factor 3	protein-coding	3.03629797663843	2.94699105131846	3.03663716242148	3.28459413991507	3.27175124855291	3.14407425085695	3.14480038619673	3.21055836134855	0.388639272499527	0.498634593842952	0.767747590057983
Merged-chr4-134749459-4	chr4	134749378	134749578	+	800.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 6 of 8)	intron (NM_145554, intron 6 of 8)	18526.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	3.30482976357314	3.75946481440355	3.37026425215997	3.41954799225252	3.69168026769917	3.60777931530882	3.73700471098865	3.79753002628183	0.737672337331861	0.136203295050439	0.410658011622976
Merged-chr5-134532594-4	chr5	134532485	134532685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 2 of 15)	intron (NM_001039162, intron 2 of 15)	19849.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	7.50940432968959	7.66802649699256	7.43461167387137	7.51804646442257	7.49051654128215	7.58202348655069	7.62102958436121	7.46805580596378	0.00449710615015436	0.979024937442088	0.99259163825749
Merged-chr3-152913240-5	chr3	152913106	152913306	+	933.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	69001.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	3.88128066765705	3.63990545274219	3.88182277841671	4.09421278678457	4.11121997009723	4.05599157604564	3.91723554115671	4.35728873398388	0.589756460676703	0.190981851783409	0.490311892807621
Merged-chr3-90460502-4	chr3	90460413	90460613	+	765.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008727, intron 7 of 21)	intron (NM_008727, intron 7 of 21)	5353.0	NM_008727	18160.0	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	3.92757962936728	3.77622474709212	3.87882762038263	4.21664372453025	3.94539882657442	3.94717591553678	3.81226881411686	3.77208191504828	-0.288491158673331	0.525418314565321	0.783252235625498
Merged-chr2-173300933-3	chr2	173300833	173301033	+	878.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24400.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	3.77833750622574	3.67887282526254	3.92345601171737	3.67212310454046	3.51660343231435	3.84626929433374	3.81260500043887	3.874704308728	0.00761823529054116	0.986962102109596	0.995239569128295
Merged-chr5-45876471-4	chr5	45876371	45876571	+	908.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-18931.0	NM_001359873	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	3.95428017887606	3.80293593933321	4.48705798442342	4.00487979856725	4.06305971021838	3.91400195876713	3.83380898990786	4.14113118173169	-0.228192821284778	0.617723584686893	0.835689113818154
Merged-chr2-166732396-4	chr2	166732303	166732503	+	844.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18571.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	3.81767004309793	3.75206614385211	3.60306795594546	3.28983764527606	4.10568349841211	3.98930831273065	3.69992364659726	3.71294868619092	0.816224000544407	0.0995450601451277	0.346090843358084
Merged-chr12-17011660-4	chr12	17011562	17011762	+	821.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201332)	promoter-TSS (NM_001201332)	65.0	NM_001201332	73667.0	Mm.159048	NM_001201332	ENSMUSG00000071398	2410004P03Rik	-	RIKEN cDNA 2410004P03 gene	protein-coding	4.81071751279878	4.87261942805581	4.84510820661116	4.4249239138434	4.54100155872543	4.2887403290509	4.56747458132372	4.58573810267083	-0.509500530032216	0.17545382517468	0.470168956483268
Merged-chr16-3929748-3	chr16	3929637	3929837	+	913.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029738, intron 8 of 11)	intron (NM_029738, intron 8 of 11)	20728.0	NM_029738	76779.0	Mm.458921	NM_029738	ENSMUSG00000014232	Cluap1	2310030D15Rik|2610111M03Rik	clusterin associated protein 1	protein-coding	4.26748550316617	3.49047523798218	3.62230062211005	3.97415090845007	3.70867802849315	3.79721383340555	3.29780804349226	3.37523371422121	-0.936450337741897	0.0942798654729309	0.335935192832759
Merged-chr3-51709379-4	chr3	51709301	51709501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	RMER15|LTR|ERVL	48222.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	7.99803953516446	8.12923517852269	8.18584853931644	8.37253866295806	7.63237192232295	7.82302074023723	7.634127291096	7.70071523237393	-0.634111889344377	0.000218231831938592	0.00390758196126583
Merged-chr5-64212812-1	chr5	64212712	64212912	+	939.3333130000001	f0_balb.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-17545.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.35732820991627	4.5869546369148	4.60163819096206	4.650323135447	4.48963544627591	4.39279072353812	4.04186395860621	4.39922308172578	-0.49070563509218	0.204230816929831	0.507425868749117
Merged-chr17-35189379-4	chr17	35189310	35189510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010734)	promoter-TSS (NM_010734)	-970.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	5.66092939298106	5.39683773390666	5.45519476578542	5.26557643393635	5.48610538324557	5.35058362593004	5.4555948082843	5.6096004717392	0.076342901463275	0.786298078434569	0.916890465832706
Merged-chr15-66845503-4	chr15	66845367	66845567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 45 of 47)	intron (NM_009375, intron 45 of 47)	-13638.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	7.69629903409531	7.89581368116935	7.92051185875878	7.65934051344872	7.61796617981393	7.55223941805239	7.61036070538471	7.32653185794439	-0.339551826024439	0.0576760081873117	0.252068780036244
Merged-chr13-102025879-3	chr13	102025728	102025928	+	750.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-257611.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	2.84458437167336	2.82192686493268	2.77566040615278	3.07962097445011	2.91582353389247	3.20110354330777	3.02173911995855	3.14318101380697	0.715919065249928	0.245435906484031	0.55650746647639
Merged-chr9-95699396-4	chr9	95699294	95699494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR87|LTR|ERVL?	50964.0	NM_001311123	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	6.48385237337804	7.09862099970632	6.23090969538988	6.51672256010821	6.99405971229838	6.98736650181957	6.96572390074111	6.44443449797544	0.344639337926191	0.193034508338692	0.493162602528256
Merged-chr9-116175774-4	chr9	116175669	116175869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009371)	promoter-TSS (NM_009371)	-406.0	NM_029575	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.08491335638984	4.82585949632962	5.37750953799413	5.32106135564039	4.94595134336047	4.88652346422824	4.95929957043087	5.14625953848829	-0.363911369646917	0.265107665422855	0.576956662317123
Merged-chr10-40476734-4	chr10	40476630	40476830	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198164, intron 9 of 11)	intron (NM_198164, intron 9 of 11)	-93632.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	4.46155351768729	4.15180517901383	5.01712710619124	4.90143878779327	4.50339048151755	4.24371651842834	4.48440474373625	4.58360530211076	-0.490364098015909	0.24165604314768	0.552158304288929
Merged-chr10-62337351-4	chr10	62337258	62337458	+	867.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 4 of 21)	intron (NM_010438, intron 4 of 21)	3063.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	4.66702034430338	4.24430217100962	4.77195188175409	4.32292163779837	4.36536357887454	4.42097293195478	4.27295094775032	4.83346182237374	-0.0439945928870099	0.913374415219489	0.967524531047837
Merged-chr10-61423450-3	chr10	61423356	61423556	+	735.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013611, exon 2 of 3)	exon (NM_013611, exon 2 of 3)	5484.0	NM_013611	18119.0	Mm.57195	NM_013611	ENSMUSG00000037171	Nodal	Tg.413d	nodal	protein-coding	3.38815373427413	3.36127692052032	3.14797870782828	3.31143421874268	3.38194940774316	3.322531873901	3.42878496241856	3.58860901089649	0.447849777638994	0.385367215081762	0.686727457164216
Merged-chr16-21704684-4	chr16	21704595	21704795	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10030.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	4.71738642832473	4.99121120005352	4.5132567338951	4.83830157749212	4.87638703890324	4.55191471924477	4.61871142817271	4.5540574775583	-0.243487286089934	0.497721678620795	0.767160446248674
Merged-chr2-167793842-3	chr2	167793773	167793973	+	690.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	102696.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	3.4956142828689	3.21704165447918	3.33183596250249	3.28632012851032	3.35266631385272	3.32204845186075	3.19879082361769	3.7273212454974	0.287712212020236	0.591894049794924	0.821848634889742
Merged-chr16-4214197-4	chr16	4214086	4214286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025432)	promoter-TSS (NM_001025432)	-782.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	7.39844588550575	7.6742692400925	7.38975498840418	7.08997953663938	7.36442760294953	7.76077665086276	7.41147067304198	7.43362948776375	0.134969999226377	0.517165336841014	0.778683190795269
Merged-chr7-106816002-1	chr7	106815902	106816102	+	562.0	f0_balb.idr	intron (NM_028910, intron 2 of 4)	intron (NM_028910, intron 2 of 4)	1873.0	NM_001360747	66786.0	Mm.159186	NM_028910	ENSMUSG00000036744	Olfr701	4932441H21Rik|4933433E02Rik|MOR283-1	olfactory receptor 701	protein-coding	3.21903306977007	3.15894008829796	3.03256471412274	3.17898839714772	3.24839758780005	3.20787825938008	3.20746458319256	3.47865990008706	0.51734192724858	0.338784652201893	0.648145150521291
Merged-chr10-86989996-4	chr10	86989844	86990044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 3 of 68)	intron (NM_138673, intron 3 of 68)	17998.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	6.25681872275851	6.4633187730608	6.23856859507621	6.42546897734366	6.39127992252526	5.86793254947187	6.58825116258763	6.25344951886068	-0.0714422903176184	0.772532772442441	0.910940763350478
Merged-chr12-99225429-4	chr12	99225311	99225511	+	962.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 4 of 5)	intron (NM_183186, intron 4 of 5)	-62603.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	5.57885783652313	5.75144238101951	5.68136654277576	5.94325590421539	5.5366219821898	4.94839892470516	5.60308939625289	5.40663908554956	-0.597945132492602	0.0449390423500588	0.216656468127529
Merged-chr17-53689377-4	chr17	53689292	53689492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028232)	promoter-TSS (NM_028232)	-77.0	NM_028232	72415.0	Mm.153202	NM_028232	ENSMUSG00000023940	Sgo1	3300001M08Rik|C81037|Sgol1	shugoshin 1	protein-coding	8.53228540669379	8.54556287165355	8.37939726357893	8.65588113649054	8.60319810234362	8.78664984065214	8.68629524289257	8.4788393639597	0.131980031540224	0.40028444796019	0.698147846003575
Merged-chr11-113430318-4	chr11	113430218	113430418	+	983.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 5 of 9)	MLT1C|LTR|ERVL-MaLR	135497.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	6.0980312856795	6.09998874661585	5.94201697587979	6.36883357880151	5.18689495162065	5.09576009999886	5.55273493555382	5.15412327384668	-1.49673703425905	1.33561557923838e-07	5.58237118699991e-06
Merged-chr14-26441620-4	chr14	26441535	26441735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 14 of 22)	intron (NM_001310445, intron 14 of 22)	84088.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	6.22770744765252	6.66929695325246	5.88093667055914	5.910178469545	6.06820230538048	6.08388092314792	6.21561323631203	6.35071343271733	-0.0402147432805458	0.884835062785409	0.956746645612156
Merged-chr5-65867516-4	chr5	65867392	65867592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	3923.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	6.97613613017039	6.44062647654819	6.36953246099895	6.83493716417455	6.46554318435226	6.75626554564616	6.49700930138256	6.78266863683207	-0.0845842805954434	0.724261711719168	0.890108631350396
Merged-chr17-44105230-4	chr17	44105124	44105324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357996, intron 1 of 3)	intron (NM_001357996, intron 1 of 3)	584.0	NM_199016	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	5.07636883582467	5.47081585444452	4.97095827740455	4.86010802855164	5.40708124402003	5.62704462331322	4.56823928165407	4.96760665232241	0.174055891487078	0.653211066348876	0.854997557892684
Merged-chr18-84699657-3	chr18	84699560	84699760	+	834.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR15|LTR|ERVK	-13958.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	3.65568507313922	3.42078057838209	3.1127021355946	3.61291254499495	3.29038325706001	3.55739426348012	3.73448518822284	3.74903708145439	0.384868821517962	0.484046399025888	0.758242770560542
Merged-chr6-11907740-4	chr6	11907561	11907761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010886)	promoter-TSS (NM_010886)	-168.0	NM_001362123	75725.0	Mm.212411	NM_029404	ENSMUSG00000029629	Phf14	1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|mKIAA0783	PHD finger protein 14	protein-coding	6.77485513872762	7.29201844465865	7.51922863902007	6.82157145609649	7.01174733778423	7.4216718637195	7.16585963129773	7.04597329830465	0.0463992131596339	0.846935000861782	0.942078137957895
Merged-chr2-70825120-4	chr2	70825037	70825237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172664, intron 1 of 19)	CpG	343.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	5.38725887804054	5.13810722311174	5.73356560512043	5.02044767252159	5.31898409118169	5.010407566658	5.33262183319222	5.56885748424703	-0.0168831254539571	0.959465476458819	0.985513818852278
Merged-chr1-154794794-4	chr1	154794661	154794861	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-68841.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	5.161022712376	5.28318662281697	5.19341965812216	5.31864222684929	5.19422730432433	5.33498992369906	4.93092179392005	4.83351038821022	-0.291273070382033	0.34918205249909	0.65679883028286
Merged-chr8-80483433-1	chr8	80483333	80483533	+	741.0	f0_balb.idr	Intergenic	Intergenic	-10612.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	3.44812813760424	3.47355040836253	3.55845739035054	3.60139767263926	3.59846610040996	3.37581605230223	3.43586448785671	3.70512429036985	0.0384940577713679	0.938082346499118	0.977479276803853
Merged-chr11-120577561-2	chr11	120577461	120577661	+	884.7666630000001	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133796, exon 6 of 6)	3' UTR (NM_133796, exon 6 of 6)	4059.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	3.67837341570504	3.906632622971	3.46335364137633	3.37580077057415	3.19742379220498	3.51942120891684	3.61306779037105	3.62617409814502	-0.400719250641635	0.455221534907608	0.738815095268454
Merged-chr2-174106773-3	chr2	174106682	174106882	+	859.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3569.0	NM_213733	228961.0	Mm.295629	NM_213733	ENSMUSG00000039263	Npepl1	BC023239|C85514|mKIAA1974	aminopeptidase-like 1	protein-coding	3.32844129568737	2.97970905204923	3.26546899833445	3.31375117251263	3.65111972042287	3.38057335591101	3.85734163942537	3.79037852263569	1.49251422613161	0.0061212470054228	0.0550687867288915
Merged-chr5-21202295-4	chr5	21202180	21202380	+	954.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 3 of 26)	intron (NR_153365, intron 3 of 26)	16013.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	5.6129127183116	5.25604719290909	5.74818667954467	5.45578082753967	5.09412768891589	4.81839639990212	4.88000519001072	5.51161708693037	-0.756275349883092	0.0226855173947935	0.139165081672327
Merged-chr9-48161982-4	chr9	48161877	48162077	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR67B|LTR|ERVL	178921.0	NM_030069	78252.0	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	5.16423596764594	5.55508506992301	4.5460207060375	5.37659695862703	4.9122396787807	5.33779665986197	4.70830483656459	4.68340285857582	-0.540101898762558	0.169300697410222	0.461822724438512
Merged-chr8-123190950-4	chr8	123190866	123191066	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007876, intron 1 of 10)	intron (NM_007876, intron 1 of 10)	4731.0	NM_007876	13479.0	Mm.20388	NM_007876	ENSMUSG00000019278	Dpep1	AI327012|MBD	dipeptidase 1 (renal)	protein-coding	4.87087854169204	4.75047130502945	4.90704307616494	4.45301293427346	5.16791138519793	4.89525220377727	4.8833299181555	4.90372782833426	0.488701120603739	0.154153308337454	0.439356063672286
Merged-chr3-88403663-4	chr3	88403541	88403741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025928, intron 1 of 4)	(A)n|Simple_repeat|Simple_repeat	6756.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	7.30581752462236	7.12183172097401	6.72499812504158	7.02099813707356	7.09182133779872	6.91865783518142	7.06739406788314	7.24113609653897	0.0372788408465131	0.857814556077644	0.946392149155271
Merged-chr15-25550866-4	chr15	25550774	25550974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71676.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	6.77483529211128	7.35045618908603	7.37009015137563	7.26589422157007	7.20113160845984	7.12356803907575	6.89783692372104	6.6435645530694	-0.309046462734456	0.17899668130671	0.475030937650734
Merged-chr6-52479394-4	chr6	52479314	52479514	+	892.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13037.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	4.48674679764467	4.21909755203198	4.52890543480855	4.39430210075912	4.48775591692661	4.95458858081083	4.46689933532491	4.56606097527786	0.48941459889703	0.191702748429627	0.491117547166441
Merged-chr10-88146968-4	chr10	88146865	88147065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027191)	promoter-TSS (NM_027191)	-24.0	NM_029249	75317.0	Mm.179378	NM_029249	ENSMUSG00000035365	Parpbp	4930547N16Rik|AI503644|PARI	PARP1 binding protein	protein-coding	5.72290611749821	5.43257471042099	5.33622023941718	5.69845704999442	5.69708759341862	5.44850639917184	5.76395143184386	5.69579432005176	0.154899673886432	0.573955743557381	0.811973307930812
Merged-chr4-140963129-4	chr4	140963014	140963214	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355515, intron 1 of 7)	Lx8|LINE|L1	1843.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	4.92675261475804	5.07790348613876	4.88830442847663	5.25428645165829	5.53519360713638	5.17893935960878	5.40480641420605	5.16976141135326	0.508747917903768	0.105859968048486	0.358434338584493
Merged-chr8-119778486-4	chr8	119778362	119778562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028883)	promoter-TSS (NM_028883)	-46.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	8.41427965595572	8.17020654059762	8.23559176803	8.45744876748596	8.21550999388646	8.36540291238704	8.32998013591938	8.10044893471972	-0.0937124472155841	0.567392022407783	0.808229609203301
Merged-chr7-118843215-3	chr7	118843128	118843328	+	928.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001168220, exon 5 of 5)	3' UTR (NM_001168220, exon 5 of 5)	12385.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	3.16696151973125	3.4010237426044	3.22339758544645	3.38642939819929	2.90147598087362	3.15516339001086	3.03756099119316	2.91544213169666	-1.27868193267769	0.0305833598424527	0.169394830770052
Merged-chr14-31593680-4	chr14	31593567	31593767	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-16284.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	3.91865954812376	4.54442322335516	4.23535458071396	4.1328011261129	4.53507021885288	4.62048559581767	4.39001756013625	4.13562731820165	0.492823500590086	0.237231882880596	0.547409089751287
Merged-chr10-77972002-4	chr10	77971901	77972101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2129.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	5.68563735023656	5.88466516218995	6.39805567021816	6.07362343027059	5.95026894379297	6.0405665350489	5.73680667734233	5.76192703452568	-0.250871908546548	0.356438079702568	0.66287574006242
Merged-chr2-33435955-4	chr2	33435857	33436057	+	796.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4633.0	NM_001276332	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	3.50375630269941	3.89340184671076	3.77261311767361	3.70800039107844	3.64913159251443	3.55678895267632	3.43260890398441	3.94867076112373	-0.202538411791899	0.683325147176333	0.870309436951249
Merged-chr19-56777193-4	chr19	56777077	56777277	+	968.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36506.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	4.70188499136951	4.93118132553829	5.14397530239046	4.62046737309098	4.38279292411337	4.95588356212078	4.99895762310282	4.85220000369544	-0.0941149951608833	0.801052108367761	0.923337043240231
Merged-chr14-31385445-2	chr14	31385341	31385541	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	32236.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	5.17859700765848	5.57669249261997	5.45613151028529	5.28118520686564	5.42305889806628	5.17592859805971	5.48243987584195	5.63194690432474	0.109521653536473	0.707819398364665	0.882638079860528
Merged-chr9-63044295-4	chr9	63044209	63044409	+	904.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-63430.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	4.40162634924224	4.45740158376813	4.22245666491499	4.35091277027483	4.47131413536832	4.01959533337243	4.67675237383029	4.35692455104991	0.10915792149446	0.783870237759264	0.915840917490605
Merged-chr2-26916421-4	chr2	26916313	26916513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013678)	promoter-TSS (NM_013678)	-8.0	NM_013678	20931.0	Mm.389260	NM_013678	ENSMUSG00000014873	Surf2	Surf-2	surfeit gene 2	protein-coding	6.894139468481	6.95551870952822	6.32739282574878	6.52659774153696	6.73737239251397	6.86510750657685	6.60924693106036	6.60699799132312	0.0165000246648401	0.943644146220177	0.979705752473139
Merged-chr17-21534659-4	chr17	21534592	21534792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144515)	promoter-TSS (NM_144515)	-847.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	6.08321322260458	6.11923837473384	5.83531399375849	6.29953788271499	6.13172952146413	5.93586050924601	5.87819553783561	6.14006267947789	-0.123469030269764	0.620596986947401	0.837348313567294
Merged-chr19-12735182-3	chr19	12735089	12735289	+	857.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30443.0	NM_170786	12803.0	Mm.290924	NM_053007	ENSMUSG00000079415	Cntf	AI429687	ciliary neurotrophic factor	protein-coding	4.12573491830515	4.04238230397957	4.55870707599902	4.28963036898426	3.92380650429405	3.99011216005827	4.10843501331468	4.07615095792957	-0.634396632635669	0.134435973008566	0.4081057574053
Merged-chr9-90269108-4	chr9	90269028	90269228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	1641.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	5.57462908257821	5.98152614423093	6.02794350524552	5.83425429365966	5.89181874259475	5.98475199190803	5.63014379699413	5.51323913383134	-0.152134393310216	0.575484499630943	0.813044471433712
Merged-chr11-102946773-4	chr11	102946694	102946894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011795)	promoter-TSS (NM_011795)	-333.0	NM_011795	23829.0	Mm.57154	NM_011795	ENSMUSG00000045532	C1ql1	C1qrf|CRF|CTRP14|gliacolin	complement component 1, q subcomponent-like 1	protein-coding	5.30844100564618	5.7169252284797	5.96219620190337	5.54341873312418	6.13942258137691	5.76051624140369	5.55631628963688	5.55271064085063	0.229125405326574	0.448647531610036	0.733878953633932
Merged-chr10-57776819-4	chr10	57776732	57776932	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8091.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	4.70776890438274	5.01129102127147	4.51926723494002	4.77997235424504	4.41507816550666	4.27108131035198	4.12643838714755	4.14088628218762	-1.1880250821944	0.0024639463708351	0.0274590948379006
Merged-chr4-135193038-4	chr4	135192939	135193139	+	877.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72394.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	5.12369894956191	5.12662700086957	5.40523831393017	5.42490185471283	4.52100986142365	4.90108387806367	4.61153365780052	5.02307519713958	-1.01572191801686	0.0026614781857851	0.0291102738899966
Merged-chr1-152622984-4	chr1	152622839	152623039	+	985.1979369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	2278.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.53186678189364	4.04206860798819	4.16099941711669	4.23217247718215	4.3757263423878	4.28625864194449	4.14344972489877	4.3788825906892	0.127816570901988	0.749618086728624	0.901415182376325
Merged-chr10-84515636-4	chr10	84515557	84515757	+	868.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18231.0	NM_175451	216197.0	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	4.22457733684589	3.9295012907122	3.83468555637532	4.06900760657272	4.36567130211951	4.01205452517539	4.07459789203165	4.17983664363275	0.385532881642793	0.361854492099431	0.667127043440359
Merged-chr1-16295009-3	chr1	16294898	16295098	+	819.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111272, intron 11 of 12)	intron (NM_001111272, intron 11 of 12)	189116.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	3.82034934983807	4.24135259657992	3.91946041121081	4.14891973736265	3.48396632529734	3.44776190106944	3.52398382687158	4.00839609182234	-1.22500995051645	0.0157900240272511	0.108780305868729
Merged-chr7-16820546-4	chr7	16820443	16820643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039878, intron 1 of 17)	intron (NM_001039878, intron 1 of 17)	-3811.0	NM_173430	243853.0	Mm.39703	NM_173430	ENSMUSG00000048920	Fkrp	A830029B19Rik|AI842067|AI847300|LGMD1I|MDC1C	fukutin related protein	protein-coding	6.13027935793152	5.5982726999815	6.09209253761367	6.10486354415384	6.0753376727096	5.6715244019095	5.95757625697997	6.10750632916897	-0.0492580668426175	0.85362351572086	0.944887848741838
Merged-chr7-113518628-4	chr7	113518524	113518724	+	855.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360668, intron 1 of 12)	MIR3|SINE|MIR	4790.0	NM_001360669	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	4.09650097121882	3.97967993914729	3.88769105140278	4.27442085270532	4.37641662398401	4.11971263198517	4.37666214965222	4.23194756450859	0.499822895007692	0.230081536046078	0.539230636272226
Merged-chr4-124711088-4	chr4	124710996	124711196	+	950.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3765.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	4.91377181845464	4.8050002940117	4.70509737153785	4.57795229975589	4.6155903140075	4.63126864391836	4.5229492603952	4.70200400831724	-0.2690787265755	0.439651669653006	0.727425871224001
Merged-chr5-36560722-3	chr5	36560619	36560819	+	723.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	21678.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	2.53528836338228	2.47686316118598	2.53550352206232	2.1578306525406	3.47168126915893	3.40024728651183	3.40712578754177	3.27500300635048	7.3069063395664	3.19663325754811e-13	3.76710527548041e-11
Merged-chr6-65528083-4	chr6	65527983	65528183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-62315.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	6.96051114546074	6.06801587469152	6.7937791676914	6.96913477748875	6.92609681216615	6.58681761985871	6.90211695712547	6.42253697830454	-0.0262838317692836	0.923029303062218	0.971488790221253
Merged-chr12-86894619-4	chr12	86894518	86894718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9804.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	8.57064577340747	8.66654272603789	8.57673368692455	8.4529578055001	8.74806441196389	8.72105347224531	8.68803674768733	8.79521076235979	0.21791978722654	0.13217482055428	0.404721546823047
Merged-chr17-73029803-2	chr17	73029702	73029902	+	919.0	f0_balb.idr|f1_balb.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-78183.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	4.0596512824172	4.14114121620246	4.53884182482273	4.32846122103079	3.6542518656811	3.48967546437546	3.36021066887229	3.57612858752395	-2.25680936345636	1.39123100568463e-05	0.000371024472662518
Merged-chr9-45906461-4	chr9	45906374	45906574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281934)	promoter-TSS (NM_001281934)	-95.0	NM_001281934	18554.0	Mm.3255	NM_008794	ENSMUSG00000035382	Pcsk7	AA959856|PC7|SPC7	proprotein convertase subtilisin/kexin type 7	protein-coding	6.1341547642848	6.43767203844346	6.17690199950195	5.95773756505367	6.62345040329057	6.54229169940921	6.55830266515057	6.0204019601214	0.423104528347908	0.0951033549035241	0.337405258370032
Merged-chr15-8994498-4	chr15	8994391	8994591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198024, intron 1 of 13)	(A)n|Simple_repeat|Simple_repeat	26542.0	NM_198024	223332.0	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	4.97983056991589	5.06530073176626	5.15570753019748	5.56038542325586	5.61268182493981	5.12042955261819	5.063907822848	5.11907192973714	0.0593182818413622	0.862937805231899	0.948398827122694
Merged-chr3-118070297-4	chr3	118070186	118070386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-201350.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	6.3483569310856	6.07944763657905	7.11732467949467	7.19710917922898	6.172377068093	5.91099510007453	6.16225017732693	5.88913344735058	-1.0912694062882	0.00046723762232551	0.00730613065015541
Merged-chr9-16114497-4	chr9	16114407	16114607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	-239951.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	7.29725561306364	7.5142364521615	7.68451064191308	7.62702593466031	7.49834804411667	7.14653602480296	7.33507529813068	7.48280751196839	-0.218738492471784	0.250900706577793	0.562187628640201
Merged-chr14-99970389-4	chr14	99970282	99970482	+	931.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010636, intron 4 of 6)	intron (NM_010636, intron 4 of 6)	179414.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	4.67342711576791	4.73732139209087	4.71382292273973	5.06863150309712	4.89124175533027	4.32271850866291	4.9990579466184	4.74915720966803	-0.107578123630691	0.773267522085323	0.911249961995847
Merged-chr5-147437567-3	chr5	147437501	147437701	+	893.744446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 1 of 18)	intron (NM_028291, intron 1 of 18)	7445.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	3.99242005608019	3.74382050804714	4.0756469175487	4.06742070771249	3.35461530794141	3.59037739725245	3.39701113787772	3.6500065246359	-1.52869631437586	0.00220640239835943	0.0252360464756751
Merged-chr3-79171741-3	chr3	79171656	79171856	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-25881.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	3.77252422900858	3.85246518089571	3.77303625125983	3.17712153890687	4.81472769580877	5.00113140241576	4.7113291171796	4.66606123567495	3.0225262799303	1.70279123553614e-11	1.48351257471514e-09
Merged-chr15-65744685-3	chr15	65744585	65744785	+	900.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42335.0	NM_133766	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	4.15209820660966	3.74162492407257	3.79957166305872	3.78681826466914	3.59977391300091	3.6331831224828	3.78381461954479	3.84724326919631	-0.465905111618206	0.320506960417601	0.632352050768202
Merged-chr10-37228089-4	chr10	37228009	37228209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89183.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	7.10101048519907	7.40712658060508	7.19233312780605	6.82128021919503	7.29701692346716	7.18220918235431	6.96975794494202	6.49540767959118	-0.157586431300201	0.5231151323321	0.782359002463945
Merged-chr19-41086915-4	chr19	41086801	41087001	+	981.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011904, intron 19 of 20)	intron (NM_011904, intron 19 of 20)	-9788.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	4.69507248678175	4.85520885645308	4.73698418033847	4.70684782995261	4.88107278484	5.09860131237849	4.67408351143976	5.45481039082579	0.61059365146596	0.0824516513131856	0.311757029950663
Merged-chr8-105339155-4	chr8	105339056	105339256	+	931.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	8814.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	4.813022213304	4.433271236017	4.74418744852648	4.89042677600747	4.60462078376094	4.54986997540643	4.53042048935778	4.41689576756156	-0.456281911594679	0.207899844603081	0.512009654660671
Merged-chr7-49778754-3	chr7	49778653	49778853	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133740, intron 2 of 15)	CpG-13170	395.0	NM_133740	71974.0	Mm.33202	NM_133740	ENSMUSG00000030505	Prmt3	2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3	protein arginine N-methyltransferase 3	protein-coding	5.56189931782289	5.58460804173959	6.04642439495027	5.65635841713817	5.5673428535885	5.59255072708148	5.7867430185499	5.8573105164613	-0.0298780656263157	0.913148773161971	0.967428663410909
Merged-chr14-51278653-4	chr14	51278554	51278754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22542.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	6.27332109958226	6.18241879712726	6.5063034923201	6.10138925534366	5.86606349735114	6.35545827062534	6.27789536355547	5.61883075099716	-0.322093051590145	0.238009215201524	0.548302111021463
Merged-chr6-29278722-4	chr6	29278608	29278808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2433.0	NM_001101486	245884.0	Mm.33683	NM_001101486	ENSMUSG00000079652	Fam71f2	AI507611|GARI	family with sequence similarity 71, member F2	protein-coding	5.51370179113243	5.39717735253932	5.84010036735155	5.09871445061166	5.25409776747798	5.54934371803232	5.22395018394338	5.39990580598909	-0.201056745348227	0.526193952450259	0.783568247232079
Merged-chr19-18713690-2	chr19	18713590	18713790	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177640, intron 1 of 1)	CpG	454.0	NM_177640	225995.0	Mm.28101	NM_177640	ENSMUSG00000047044	D030056L22Rik	-	RIKEN cDNA D030056L22 gene	protein-coding	3.81274846682556	3.28974637507454	3.27413371358189	3.59386093118756	3.61133440529222	3.68868860222788	3.44767629452243	3.62176769258503	0.257168012511602	0.6207095607909	0.837436707751155
Merged-chr17-34124808-4	chr17	34124698	34124898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360530)	promoter-TSS (NM_001360530)	-720.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	5.92477854977056	6.21452801666701	5.63850855170892	5.54295164554688	5.88462408770437	5.5825758759878	5.71256572652937	5.5513250945435	-0.249101526099209	0.394643421492672	0.693682147756976
Merged-chr6-55182536-4	chr6	55182442	55182642	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-7552.0	NM_009349	21743.0	Mm.299	NM_009349	ENSMUSG00000003477	Inmt	Temt	indolethylamine N-methyltransferase	protein-coding	4.47343762682455	4.24849388063471	4.43301970450031	4.55521017806954	4.18922575096116	4.33163843466611	4.70436161323686	4.43020954721381	-0.0391502400653865	0.920045073636872	0.970406583631903
Merged-chr16-23612202-4	chr16	23612120	23612320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023386, intron 1 of 1)	intron (NM_023386, intron 1 of 1)	2301.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	4.89311551631523	4.84155905858776	5.13329958931067	5.16353277027129	5.01680578194542	5.06900328379236	5.01177718548207	5.16051920460022	0.070386340491989	0.822534561723015	0.932143478460956
Merged-chr10-77509812-4	chr10	77509706	77509906	+	731.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133998, intron 2 of 5)	intron (NM_133998, intron 2 of 5)	6007.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	3.79065169842945	3.85302713690993	3.30629010516665	3.83626408249814	3.86580554774642	3.74688012186625	3.96152117788703	3.88647412845665	0.418176132111864	0.391504372584856	0.691279263407274
Merged-chr8-126693803-3	chr8	126693682	126693882	+	851.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-100346.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	2.83035893487736	2.69203810557443	2.7562983332847	2.94394049468141	3.32484455762863	3.20588435131212	3.34569567082474	3.30982782949542	1.9346861966043	0.00217020572899765	0.0248949353077073
Merged-chr11-74926821-2	chr11	74926721	74926921	+	920.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 1 of 18)	intron (NM_001002764, intron 1 of 18)	949.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	3.23997559182083	2.90447867614567	3.18238662411735	2.99826170881909	3.08630731448251	3.23439661623458	3.11039751966988	3.58375291818042	0.702410017492443	0.224735601567011	0.533212998454623
Merged-chr7-127851077-4	chr7	127850983	127851183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	9275.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	6.99933343448869	7.72109107019213	7.71295224455676	7.5933609851254	7.379754357626	7.3568738567769	7.55345574792446	7.42124826564487	-0.150320375984834	0.478221697557095	0.754333448301065
Merged-chr4-58535976-1	chr4	58535876	58536076	+	655.5	f0_c57.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	17317.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	2.66831034079601	2.81211719462806	2.66852633899289	2.59564250603174	3.59984879232376	3.27917604935169	3.63017821222773	3.21751058904007	3.30335463063283	5.18548389510007e-07	1.91738991256794e-05
Merged-chr3-90627611-2	chr3	90627511	90627711	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	14717.0	NM_011313	20200.0	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	2.1548530130893	2.17278266936545	2.0731485105212	2.00639069636537	2.44822037703685	2.48292880321198	2.71596099532646	2.50311939748839	2.91695295927582	0.000209613599763098	0.00378394278912948
Merged-chr4-119293103-4	chr4	119292971	119293171	+	997.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011732, intron 2 of 7)	intron (NM_011732, intron 2 of 7)	1442.0	NM_011732	22608.0	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	5.00480229960306	5.14754145500546	4.93257993604302	5.09143135244839	5.27366387436365	5.31297827473663	4.90923710892026	5.22903853209804	0.264859128452537	0.388260879224169	0.688915268263078
Merged-chr3-51341291-4	chr3	51341196	51341396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291059)	promoter-TSS (NM_001291059)	-652.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	7.09555290175025	7.62474828876893	7.37021190763757	7.4390577189469	7.65437347008063	7.62679878583939	7.83171819206601	7.21296508669708	0.267481644813599	0.204528336894272	0.507782437802491
Merged-chr15-25634319-4	chr15	25634219	25634419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	11769.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	6.00170093678969	6.41874962369018	6.68161145312161	6.64918550471188	6.32566020850814	6.5545562457774	6.55982470045909	6.35554976555734	-0.0387791607618698	0.874523299475985	0.952921542694015
Merged-chr4-119178490-4	chr4	119178368	119178568	+	938.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013848, exon 13 of 13)	exon (NM_013848, exon 13 of 13)	-4273.0	NM_001145936	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	4.24202398452645	4.45179066638266	4.66929330173007	4.04513778204753	6.96067552143426	6.34405784190408	6.84654159133399	6.41786480016003	4.09372815571701	3.10559204161111e-37	8.18714577517915e-34
Merged-chr5-114654169-4	chr5	114654058	114654258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 1 of 15)	MIR3|SINE|MIR	4263.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	6.90903075853761	7.13552123592078	6.63253448684518	6.75574454547873	6.53996767507686	6.57160624607748	6.37947467205771	6.33149114952609	-0.586862881724165	0.00836315597913978	0.0692606725427464
Merged-chr7-102222437-4	chr7	102222338	102222538	+	976.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145583)	promoter-TSS (NM_145583)	-590.0	NR_111938	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	4.92615364375403	4.9186305150965	4.77537766527957	4.77982098586981	4.93133607077087	5.26545317282685	5.18748771895815	4.88745338292097	0.44160016279505	0.16779959191173	0.459695448875569
Merged-chr3-104030945-3	chr3	104030860	104031060	+	856.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133853, intron 15 of 21)	intron (NM_133853, intron 15 of 21)	-62644.0	NR_030676	100125931.0	Mm.400392	NR_030676	ENSMUSG00000089998	Phtf1os	A130049A11Rik	putative homeodomain transcription factor 1, opposite strand	ncRNA	3.31731706888608	3.31132511151371	3.37657983489039	3.90008848315884	3.45127609357068	3.16135013050304	3.30608466366878	3.58611133363503	-0.435224328864344	0.452327552739709	0.736705097509548
Merged-chr15-38074328-4	chr15	38074226	38074426	+	897.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001112721, intron 1 of 58)	intron (NM_001112721, intron 1 of 58)	4528.0	NM_001112721	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	3.8516556941554	4.39082992631814	3.91020063174604	4.55195044297989	4.16673365001968	4.29351109681426	4.05374001760421	4.41826910170926	0.0210101348357364	0.96353473556008	0.986968281921325
Merged-chr10-86885910-4	chr10	86885814	86886014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 42 of 68)	intron (NM_138673, intron 42 of 68)	106909.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	7.04986642778815	7.18176039097491	7.4807451783219	7.83856185319388	7.54774818647668	7.37735899847979	7.68785571879787	7.48486423538399	0.120361247438432	0.596447394598338	0.824728113528665
Merged-chr8-64945002-4	chr8	64944918	64945118	+	913.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2167.0	NM_001163747	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	3.93403253839191	4.66083026584316	4.32621713749051	4.04595837408009	4.27960764709277	4.1689014805517	4.22001494126587	4.32345544520004	-0.0452145126780351	0.916348265979071	0.96897753725177
Merged-chr8-41047077-4	chr8	41046965	41047165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 5 of 13)	intron (NM_001005863, intron 5 of 13)	-5134.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	5.67275699721063	5.75532151863177	6.04147085589257	6.02436585942319	6.22638143151784	6.08345474681922	6.2764861386719	6.32141241637808	0.52196914807796	0.0323990746767873	0.176226825675032
Merged-chr10-128059816-4	chr10	128059706	128059906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019766, intron 1 of 7)	CpG	824.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	6.34084973737071	6.18352829290672	6.04565344853975	6.28820060194005	6.39854994732512	6.34839294672288	6.14111209684314	6.14795207743024	0.0682574253432843	0.766320101491916	0.908598579183
Merged-chr9-65293230-4	chr9	65293131	65293331	+	925.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1029.0	NM_011802	270166.0	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	4.87324105534986	4.78494531762875	3.92159524488183	3.96551254491479	4.2756760262119	4.36320639413773	3.90599276052149	3.797694491139	-0.841908644046383	0.103598344353934	0.353670338262288
Merged-chr1-187216873-4	chr1	187216778	187216978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357645, intron 1 of 9)	intron (NM_001357645, intron 1 of 9)	1135.0	NM_001357645	67769.0	Mm.138321	NM_026367	ENSMUSG00000039210	Gpatch2	5830433G22Rik|5830436K05Rik|AI427714|AI447508|AW107440|AW491060|Gpatc2	G patch domain containing 2	protein-coding	5.33256938884224	4.9804587623067	4.9191398492466	5.41158267309274	5.17822448250211	4.97930528690642	5.22308883750581	4.66813504193379	-0.291968492722976	0.395174408796399	0.69409301033236
Merged-chr11-76677227-4	chr11	76677121	76677321	+	870.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2652.0	NM_177709	237858.0	Mm.127006	NM_177709	ENSMUSG00000046275	Tusc5	C130069F04Rik|DSPB1|Lost1	tumor suppressor candidate 5	protein-coding	3.87573902438938	4.14391663656963	3.82040554556795	4.01272828935465	4.15412354725963	4.24931169551934	4.01380697436049	4.25053931055904	0.503256102344874	0.227997724164636	0.536768208252782
Merged-chr7-98720440-4	chr7	98720346	98720546	+	890.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17199.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	4.30780016414021	4.01028557288437	3.65032310209608	4.07816145385083	4.09934736363996	4.21774465164299	4.02779744422245	4.30567365403795	0.335686500580477	0.444356772195406	0.730774412852539
Merged-chr13-113875925-4	chr13	113875827	113876027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	81419.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	5.25156753650762	5.19594910035586	5.71887784590381	6.17438338312544	5.63181276805336	5.53266189395399	5.64026576563995	5.9974655102371	0.0694976866654393	0.840273479880155	0.939246943014465
Merged-chr8-94172608-4	chr8	94172491	94172691	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008630)	promoter-TSS (NM_008630)	-27.0	NM_008630	17750.0	Mm.147226	NM_008630	ENSMUSG00000031762	Mt2	AA409533|MT-II|Mt-2	metallothionein 2	protein-coding	5.07024133377057	4.95787806815097	5.07109716303106	4.9989718582474	5.06637601455238	5.33743581770919	4.71312695212561	5.1000483490856	0.0922904454136803	0.773873487693855	0.91166330938482
Merged-chr11-54089059-4	chr11	54088983	54089183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11841.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	5.73783287488441	5.99922554409336	5.45781361286761	5.6898728502845	5.89388323447032	6.1629530893282	5.80620672751937	5.73477279594059	0.275481421810652	0.30673258373638	0.619092570117727
Merged-chr12-40277832-4	chr12	40277722	40277922	+	981.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	54458.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	5.03703872218903	4.87535748296678	4.92986167498543	5.44959155665623	5.34914137033739	5.06832788074751	5.11230986715392	5.03448259155437	0.0694845753479719	0.836946992554613	0.938132001645803
Merged-chr19-30033331-4	chr19	30033223	30033423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144873, intron 1 of 15)	intron (NM_144873, intron 1 of 15)	2810.0	NM_144873	109113.0	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	5.95987318931899	5.92756565108347	6.06827611284863	6.46794755877083	5.91118072181839	5.9450956401865	6.01661552005704	5.78935968746835	-0.359442311053935	0.172421262851751	0.465848285007582
Merged-chr19-7241203-4	chr19	7241093	7241293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027643)	promoter-TSS (NM_027643)	29.0	NM_027643	70999.0	Mm.329605	NM_027643	ENSMUSG00000024764	Naa40	4931433E08Rik|AU023197|Nat11|NatD	N(alpha)-acetyltransferase 40, NatD catalytic subunit	protein-coding	7.63563750427777	7.82540467630858	7.50545000792814	7.3262410833804	7.61493131521236	7.57675592277119	7.30106823665461	7.34296898794119	-0.145621590461644	0.46378754710732	0.744988576808808
Merged-chr2-168557050-4	chr2	168556966	168557166	+	986.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	33299.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	4.93195837396692	4.52771161249488	4.55026700306449	4.88033712363768	4.64315150075291	4.06722914308115	4.2116429805912	4.58727795168267	-0.72869790377737	0.0731631256218543	0.291121348461603
Merged-chr4-24617511-4	chr4	24617411	24617611	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033531, exon 10 of 10)	exon (NM_001033531, exon 10 of 10)	121060.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	5.36990721462958	5.66213674308351	5.75997642710944	5.99276401910482	5.21298607910075	5.57654709604471	5.00100363163698	5.1708641438243	-0.833260650754866	0.00738820698936374	0.0633434413088009
Merged-chr11-116808407-3	chr11	116808281	116808481	+	881.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347633, intron 4 of 4)	intron (NM_001347633, intron 4 of 4)	19665.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	3.81748495519094	4.05441209274174	3.40266309476525	3.60164608739129	3.40985765862863	3.24597524856715	3.26397892915281	3.57247151357377	-1.18729057314455	0.0312634740549442	0.172130478013372
Merged-chr8-72135211-4	chr8	72135157	72135357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001491)	promoter-TSS (NM_001001491)	-35.0	NM_001001491	326618.0	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	6.2512008967776	6.07646329886669	6.35097192504648	6.23766303465135	5.17098159516776	5.652693582588	5.69970555002227	5.36938602506484	-1.23425408001583	4.81820042926241e-06	0.000143196112047795
Merged-chr18-67366028-3	chr18	67365928	67366128	+	755.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007702, intron 3 of 4)	L2|LINE|L2	-21925.0	NR_033214	338360.0	Mm.441590	NR_033214	ENSMUSG00000046415	B430212C06Rik	-	RIKEN cDNA B430212C06 gene	ncRNA	3.63967005259937	3.5884030155078	3.78394513052374	3.76284962952958	3.45656779108823	3.18927400819668	3.52075394430705	3.58637916064796	-0.821468226215626	0.107466564042823	0.361586507303432
Merged-chr2-129393742-1	chr2	129393642	129393842	+	596.0	f0_c57.idr	Intergenic	Intergenic	-22603.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	3.15888121744553	2.99317770902948	2.79662806033316	2.66577404423235	3.55231767537796	3.56592225637043	3.52822859176785	3.49416054095898	2.53613813373718	1.69359338706475e-05	0.000441245547942467
Merged-chr6-135951837-1	chr6	135951737	135951937	+	841.6666869999999	f0_c57.idr	intron (NM_008171, intron 4 of 14)	intron (NM_008171, intron 4 of 14)	221674.0	NM_008171	14812.0	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	3.0551246676909	2.97580492018898	3.20171254286163	3.09886655742122	4.05681434639539	3.6328921158293	3.74609895715147	3.89121984896006	2.58406126697194	2.90146106103646e-06	9.16658219545113e-05
Merged-chr15-57705165-5	chr15	57704972	57705172	+	684.7363280000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	10405.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	3.5249749264142	3.33991371367112	3.35806587861279	3.12509025689693	3.3136419936205	3.92915707375384	3.40266688434432	3.23187406778517	0.533093473479401	0.338736952151018	0.648144019278422
Merged-chr2-167345200-4	chr2	167345080	167345280	+	780.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	3998.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	4.13912715408121	3.99426445544106	3.92190563306578	3.44208220700429	3.82004840858442	3.83649594228075	3.64529536138894	3.82084801944518	-0.303281790192727	0.540591533888323	0.792829019929487
Merged-chr8-23256712-2	chr8	23256636	23256836	+	1000.0	f0_balb.idr|f0_c57.idr	exon (NM_001042484, exon 2 of 6)	exon (NM_001042484, exon 2 of 6)	344.0	NM_020585	57437.0	Mm.196269	NM_020585	ENSMUSG00000015341	Golga7	AB041568|C130038N16Rik|GCP16|GOLGA3AP1|HSPC041|R75586	golgi autoantigen, golgin subfamily a, 7	protein-coding	5.17109692417404	5.15300100275273	5.50833723280562	4.67678334489079	5.09438008385545	5.14104915664182	5.26785051127423	5.40210171993768	0.162696360698472	0.635272561732417	0.845633612363053
Merged-chr2-11554532-1	chr2	11554432	11554632	+	543.0	f0_balb.idr	promoter-TSS (NM_001177758)	promoter-TSS (NM_001177758)	-603.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	3.21955397055185	3.20695329272913	3.16029221127842	3.09647335949452	3.33464043284544	2.99877089774313	3.14909451546134	3.57150880553867	0.433498196945628	0.440939040761223	0.728288664168537
Merged-chr5-67532535-4	chr5	67532442	67532642	+	902.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68644.0	NR_015582	320479.0	Mm.387187	NR_015582	ENSMUSG00000107385	C330024D21Rik	-	RIKEN cDNA C330024D21 gene	ncRNA	5.04708406573139	4.78546460101301	4.05988782250289	4.41787272573118	4.64248407496276	4.35534347920217	4.48670976699454	4.58613096801086	-0.216482958414359	0.609864612356247	0.831313976845251
Merged-chr10-82858651-4	chr10	82858568	82858768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015762)	promoter-TSS (NM_015762)	-538.0	NM_001042513	50493.0	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	6.88029164551628	7.14535166672602	7.09569058334356	6.46684894864711	7.17474407824416	7.32860317069527	7.05992514468305	6.80602217018114	0.26970320198602	0.258046273923684	0.569869868499702
Merged-chr13-37451679-4	chr13	37451588	37451788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106343.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.39898754239838	5.61480206533454	5.2836871913397	5.60093902888907	5.23175728103202	4.60096492731156	5.16347724136468	5.33940976558425	-0.668563161381456	0.0407573020273014	0.204113417364475
Merged-chr6-106791620-4	chr6	106791506	106791706	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021449, intron 4 of 10)	intron (NM_021449, intron 4 of 10)	8481.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	5.11100441406002	5.46238440736853	5.46110619837362	4.99192284622242	5.82064324200205	5.32667426750298	5.25625499194005	5.85765677676297	0.596084200355383	0.0638008166783927	0.268263887171881
Merged-chr1-135110319-3	chr1	135110215	135110415	+	852.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007955, exon 32 of 38)	exon (NM_007955, exon 32 of 38)	-5039.0	NM_001033409	329252.0	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	2.7404635725915	2.87490299771448	2.74074639331641	2.90441951828124	2.78363375029434	2.97414101942266	2.85760767168014	2.86633999617727	0.202303357555186	0.741032923548138	0.898139463026673
Merged-chr4-118620835-4	chr4	118620699	118620899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026789)	promoter-TSS (NM_026789)	0.0	NM_026932	69072.0	Mm.29906	NM_026932	ENSMUSG00000028729	Ebna1bp2	1810014B19Rik|AA537058|B830003A16Rik|C81321|Ebp2|Nobp|p40	EBNA1 binding protein 2	protein-coding	6.63359811083008	6.45636261281294	6.18835716864277	6.06309956101423	6.91157512111262	6.71729662390104	6.71516986370904	6.48693329743626	0.556740052764751	0.0200440066740389	0.128220755913671
Merged-chr12-86947301-4	chr12	86947200	86947400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289432)	promoter-TSS (NM_001289432)	-43.0	NM_173735	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	8.3098373295755	8.59410412992285	8.69460539031922	8.47919138524977	8.48525221470546	8.61995732038385	8.81713007777161	8.42629608680807	0.0855948178601415	0.615484699029531	0.834477192020031
Merged-chr7-31157183-4	chr7	31157065	31157265	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5193.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	4.91912191643533	5.23305739336645	4.61883577927152	4.10742180769165	5.2357913841041	4.87714782626082	4.5546740086466	4.43470703552872	0.0735111348687022	0.870576705704109	0.951405771688593
Merged-chr6-138140162-4	chr6	138140064	138140264	+	877.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019946)	promoter-TSS (NM_019946)	-363.0	NM_001361308	56615.0	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	4.51501894785625	4.17162082093578	4.59015395928335	4.57011713856821	4.25082081318629	4.60738049127594	4.04412647041463	4.11137241498582	-0.488638394427708	0.234927380941167	0.544793642015095
Merged-chr19-58980009-4	chr19	58979906	58980106	+	921.271423	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175172, intron 14 of 14)	intron (NM_175172, intron 14 of 14)	-36334.0	NM_001327998	73442.0	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	4.29420037528973	4.29088420385888	4.25207953238373	3.96143046972245	4.27274710132645	4.18933089840774	4.09686540379175	4.20519688116457	0.0100515309841372	0.980265804980887	0.99281244474172
Merged-chr11-94589574-4	chr11	94589464	94589664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153807, intron 1 of 15)	intron (NM_153807, intron 1 of 15)	12222.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	8.2740019630733	8.46179370349887	8.07566853833667	8.11190770889346	8.08798705345829	8.14364985081639	8.20251337138786	8.08982423251008	-0.137049811119699	0.411732076481129	0.707123186245418
Merged-chr11-11742914-4	chr11	11742817	11743017	+	736.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301865, intron 3 of 6)	Tigger16a|DNA|TcMar-Tigger	52740.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	3.7227132849791	3.62512115938963	3.55977721308865	3.56473492014142	3.53002662948211	3.61714291220903	3.80502262124671	4.0360001667698	0.430730113405393	0.369110872125198	0.673457981313429
Merged-chr14-118941265-4	chr14	118941086	118941286	+	861.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008929, intron 1 of 11)	intron (NM_008929, intron 1 of 11)	3254.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	3.71047871010549	3.67180038988132	3.86574521404481	4.10126219680883	3.64720235466734	3.82926396502853	3.84942856318496	3.86346339581925	-0.20120421539246	0.668106186200798	0.862837936034118
Merged-chr11-100640219-4	chr11	100640126	100640326	+	616.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177790, intron 1 of 7)	CpG	10467.0	NM_177790	278304.0	Mm.274734	NM_177790	ENSMUSG00000014198	Zfp385c	A930006D11Rik|Znf385c	zinc finger protein 385C	protein-coding	3.73608904558131	3.54694256744596	3.46589843489952	3.55309279496329	3.7931723679553	3.45329807330711	3.72077842973641	3.78222676781308	0.382660208484287	0.424166515166087	0.71604841147627
Merged-chr7-128221154-4	chr7	128221066	128221266	+	962.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14800.0	NM_009943	12862.0	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	5.69316274370481	5.76366185326295	5.97189592499662	6.2828389265518	5.18183209084549	5.34112443579764	6.02112639589942	5.85930642035456	-0.518486859784423	0.110332145819835	0.366806716829055
Merged-chr1-171118430-4	chr1	171118335	171118535	+	911.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3226.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	4.56359192664575	4.74862381566427	4.2149675532725	4.25789242858654	4.38556064584264	4.44017799247579	4.38166835279344	4.52258376540424	-0.0600303045490077	0.877544493095213	0.954199567096042
Merged-chr11-77515822-3	chr11	77515701	77515901	+	668.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026185, exon 1 of 2)	exon (NM_026185, exon 1 of 2)	684.0	NM_026185	67477.0	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	3.30117848233577	3.24455594816026	3.76427818828932	3.09273577248843	3.46822054789581	3.47774551427638	3.28967573509072	3.62568009469891	0.355486345203615	0.522370962059465	0.781971587334536
Merged-chr15-97727366-3	chr15	97727280	97727480	+	966.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168693, intron 1 of 9)	intron (NM_001168693, intron 1 of 9)	4025.0	NM_001168693	19011.0	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	4.05833508338038	3.57885415266052	4.36312712768066	4.33982188542836	3.7657009022177	3.28884275677103	3.45808998753956	3.76814638080064	-1.55302860902429	0.00595824731967807	0.0539776105342198
Merged-chr1-127219357-4	chr1	127219244	127219444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	MIRc|SINE|MIR	14358.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	5.33064253074039	5.30549575152242	5.65609605679882	5.95780133419759	6.50030384173421	6.63610635360264	6.28360712639022	6.45721795155071	1.32370108444683	3.64359169629968e-06	0.000112055373001808
Merged-chr3-96580330-4	chr3	96580240	96580440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027241, intron 5 of 7)	intron (NM_027241, intron 5 of 7)	-13539.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	6.99274017968088	6.77379917218862	6.15713660535501	6.52682840236198	7.03367523795336	6.38183001723272	6.75563913881499	6.91649930916392	0.221240492726558	0.398372967238712	0.696635540782353
Merged-chr5-144965212-4	chr5	144965130	144965330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038627, intron 1 of 17)	CpG	600.0	NM_001038627	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	6.30164982359218	6.3270404636538	6.64154458968027	6.20441176623085	6.51628472154121	6.78690690094468	6.72055831897072	6.47888949083654	0.381885075778065	0.0912493929873218	0.330096835052863
Merged-chr15-39606680-4	chr15	39606585	39606785	+	950.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053271, intron 21 of 26)	intron (NM_053271, intron 21 of 26)	-52826.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	4.66309367856019	4.58314179057339	4.97897824396081	5.36792643171197	4.73785406189251	4.88743005506875	5.20546856706136	5.50838068982209	0.310172526907053	0.436063507675304	0.724979898928373
Merged-chr9-25076273-3	chr9	25076192	25076392	+	955.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75489.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	4.44637852866173	4.3238875358264	4.56171115601578	5.08656150367159	3.98233335246782	3.90936580179208	4.00912899753767	4.1290440872684	-1.59865094176223	0.000318397296133555	0.00532000026795547
Merged-chr6-38949217-4	chr6	38949124	38949324	+	961.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 2 of 12)	intron (NM_011539, intron 2 of 12)	30238.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	4.75883355835534	5.27688548716186	4.75959299659374	5.08705824224761	5.06743438153169	5.38000438856963	4.77800202471483	4.94846691420882	0.115898622910396	0.739192170873493	0.897177244958724
Merged-chr1-185196512-4	chr1	185196436	185196636	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7632.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	5.16975330386957	5.03235038474229	4.80931730026332	5.19161946593196	4.38170151005752	4.86685684146834	4.70895403411827	4.84353674066311	-0.747300276578677	0.0323459982502572	0.176101867022721
Merged-chr19-38224167-4	chr19	38224095	38224295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081075)	promoter-TSS (NM_001081075)	-63.0	NM_001081075	70567.0	Mm.30607	NM_001081075	ENSMUSG00000054237	Fra10ac1	5730455O13Rik|AI448293	FRA10AC1 homolog (human)	protein-coding	6.34710272918223	6.0471546265419	6.33073242467498	6.24312363737017	6.31010845158472	6.18849831529001	6.2627673458134	5.91333169652671	-0.0914355043814912	0.699072470959867	0.878624019192029
Merged-chr1-184731827-3	chr1	184731685	184731885	+	931.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008250, exon 1 of 4)	exon (NM_008250, exon 1 of 4)	708.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	3.67885797840702	4.44129198401875	4.01615175814973	3.60926979245861	3.89327582181164	4.32880623035603	4.13808935668008	4.24033692648858	0.462597930743521	0.344437597264409	0.652914285727938
Merged-chr2-58665545-2	chr2	58665445	58665645	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	-89639.0	NM_001289659	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	2.70281211933936	2.61134584673029	2.98236965831129	2.49461492829959	2.55217695602089	2.45103060416825	2.81062013872935	2.50016010312016	-0.599885087989791	0.399899185964155	0.697931153338137
Merged-chr17-50192576-4	chr17	50192459	50192659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2062.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	6.17527902613975	6.59782287561064	5.89591370363187	6.46917181256583	5.84582876925846	5.92141127036424	6.06524793116355	5.7106809242263	-0.673755884505631	0.0116609490069041	0.0880558762319569
Merged-chr1-156437520-4	chr1	156437429	156437629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 11 of 15)	intron (NM_009230, intron 11 of 15)	-16614.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	7.5015546402111	7.88695032521904	7.75265948759079	7.73158073867323	7.56637583164789	7.92923979309705	7.52161902919448	7.62426885717159	-0.0810254226240648	0.663819611559044	0.860777383674392
Merged-chr1-64226231-4	chr1	64226118	64226318	+	995.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104829.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	4.54987196136894	5.24907941694082	5.22188523416524	4.52093482635202	5.09144589491008	4.9007395023207	4.92287568233611	4.45198018157217	-0.117082229860922	0.771336717091292	0.910379161490028
Merged-chr15-63612287-4	chr15	63612194	63612394	+	923.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132686.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	4.66354521814979	4.56116455325725	4.73852013589819	5.24523493611848	4.79663463581732	4.28497995209265	4.39232844429898	4.20915389679139	-0.844547822957556	0.0450133085131384	0.216868736474973
Merged-chr7-44561207-4	chr7	44561098	44561298	+	878.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7233.0	NM_001285517	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	4.12383492215087	4.4534410136262	4.02379250164067	4.33456970333692	4.0467725912498	4.43228541638142	4.15391761912268	4.12199147459504	-0.159141771141155	0.701273489558826	0.879638136843261
Merged-chr2-5772660-4	chr2	5772561	5772761	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57899.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	4.71579724633184	4.81316878259635	5.17489568454429	5.06879903550361	5.42249808859591	5.06754586915356	5.64394555320676	5.55622663483477	0.877364667755705	0.00658661225738321	0.0581240359370543
Merged-chr6-91684706-2	chr6	91684606	91684806	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 1 of 14)	intron (NM_009320, intron 1 of 14)	639.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	4.87024882522803	5.22920661639305	5.0809497669169	4.40990058120976	5.2745946821993	5.15464346576737	4.956110099778	4.97691846004472	0.354433320606553	0.331273302208084	0.642463690748984
Merged-chr9-35305449-4	chr9	35305351	35305551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	24346.0	NR_040715	71133.0	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	11.177590386935	10.3552194351138	11.6161471335688	11.5585268367143	10.9020793737061	11.1574145391956	10.6783823273868	11.7931289685758	-0.0721423224260474	0.868255474177243	0.95066154527007
Merged-chr8-82351508-4	chr8	82351412	82351612	+	881.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008357, intron 2 of 7)	B3A|SINE|B2	51074.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	4.75032804343934	4.71157501580246	4.35334104880138	4.25725002920114	4.95357595204096	4.33383225662712	4.42332015099553	4.30327890581935	0.0438535936324174	0.916578232598757	0.969089134718762
Merged-chr12-100352291-4	chr12	100352173	100352373	+	744.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 16 of 19)	intron (NM_001033213, intron 16 of 19)	75664.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	3.51562376287508	3.39118777450284	3.76581686397344	3.59715474082808	3.70929405197806	3.17019156705634	3.6069843495605	3.5681244043896	-0.121204303268131	0.818748066407177	0.930477529358738
Merged-chr1-87549609-4	chr1	87549572	87549772	+	891.979126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111314, intron 1 of 14)	intron (NM_001111314, intron 1 of 14)	24198.0	NM_001111314	53972.0	Mm.435439	NM_019867	ENSMUSG00000026259	Ngef	Tims2|ephexin	neuronal guanine nucleotide exchange factor	protein-coding	3.57807789945747	3.4595196651891	3.63753369886709	3.97710274909903	3.79927106156237	3.86794266906874	3.88133920035845	4.15083863849544	0.66383163365989	0.180561435232595	0.476942976896162
Merged-chr2-26444573-3	chr2	26444479	26444679	+	859.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153125, intron 1 of 29)	intron (NM_153125, intron 1 of 29)	637.0	NM_153125	227648.0	Mm.206371	NM_153125	ENSMUSG00000026924	Sec16a	AU024582|C230052J16Rik	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding	3.47825822278662	3.30346094896497	3.53341576855467	3.1986758775741	3.70093945888084	3.65039526659191	3.57086565649392	3.47682657692809	0.784973978531256	0.116983241136319	0.378471438609249
Merged-chr8-34065453-3	chr8	34065351	34065551	+	948.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	42363.0	NM_001293758	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	4.25911190688995	4.39446751426018	4.42509928297977	4.92711953196155	3.92897864364514	3.84561324887523	4.15003235656956	3.72090860979282	-1.59000235895174	0.000544406625575253	0.00826585307206077
Merged-chr7-16223086-3	chr7	16222920	16223120	+	792.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027883)	promoter-TSS (NM_027883)	-988.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	2.90098649424288	3.0902078882602	3.32018792287545	3.05028440491853	2.65845153255407	2.73299989623668	2.6206077133314	2.69989335106078	-2.0874464683543	0.00268395007948244	0.0292962555907806
Merged-chr9-113783919-4	chr9	113783826	113784026	+	820.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 6 of 39)	intron (NM_001114347, intron 6 of 39)	-9404.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	4.38533177287225	4.23657190148241	4.06464747051819	4.22292498850675	4.3179460359311	4.18903442212751	4.40540869040159	4.38320982881527	0.233974256618871	0.544543282066497	0.79532034222127
Merged-chr15-53474332-4	chr15	53474223	53474423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	-128140.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	5.75592854665407	5.20559990145211	5.80465070812823	6.03561504319447	5.84548594141518	5.50770366495217	5.98834198962555	5.72832240249252	0.0574906271591534	0.850333619297516	0.943594049139091
Merged-chr6-72390202-4	chr6	72390076	72390276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016794, intron 1 of 2)	intron (NM_016794, intron 1 of 2)	491.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	5.0796301130516	5.39246879322561	5.81996730769032	5.29473500405711	5.42332604145966	5.94826327350794	5.58088328721819	5.49925341242014	0.350628606881857	0.261952375001889	0.573955183779458
Merged-chr12-64966324-4	chr12	64966249	64966449	+	980.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025707)	promoter-TSS (NM_025707)	607.0	NM_177805	328108.0	Mm.138465	NM_177805	ENSMUSG00000035614	Togaram1	A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding	4.59159601586134	4.61444735066731	5.14420359599023	4.63448308734445	4.67861315931011	4.72608044822481	4.80515670729677	4.99280078247444	0.0940433808139184	0.792650797819857	0.919627897475503
Merged-chr16-22010395-4	chr16	22010293	22010493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357424, intron 1 of 15)	intron (NM_001357424, intron 1 of 15)	909.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	6.21535608191726	6.51799459258081	6.39033497248537	6.64819573266811	6.58258383310146	6.35258381472559	6.20510132796207	6.92068180271605	0.120362907617826	0.632816739272978	0.844186567548986
Merged-chr6-97449938-4	chr6	97449818	97450018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	9368.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.6496151686592	7.91982104253667	7.87829481212928	7.39344038907211	7.40850056799848	7.43086230845849	7.36675152102981	7.52353534876076	-0.37754658312247	0.0540080959401666	0.242646106225154
Merged-chr2-118126083-3	chr2	118125992	118126192	+	751.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011580, exon 22 of 22)	3' UTR (NM_011580, exon 22 of 22)	14216.0	NM_001313914	21825.0	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	3.68733716730313	3.92739486089392	3.68782918247152	3.76687977602337	3.84283722059863	3.7489326436156	3.67359770067269	3.93373224276809	0.0945960652536417	0.834542139600495	0.936929006230221
Merged-chr15-64046065-4	chr15	64045957	64046157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	13707.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	6.77171511354256	7.24423612859521	6.60503664020229	6.75207927214786	6.83529494325816	6.96370348045826	6.92319037022438	6.08459822875951	-0.168387267618017	0.532500865355739	0.788179391355352
Merged-chr15-79409484-4	chr15	79409383	79409583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6180.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	6.24831811301233	6.23347725194108	6.41334893421827	6.34053558361842	6.36099414769095	6.14627645148356	6.44671111353518	6.53793386703706	0.1051623482535	0.636820218420969	0.846465153526969
Merged-chr1-170255707-4	chr1	170255602	170255802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151590)	promoter-TSS (NR_151590)	37.0	NR_151590	622708.0	Mm.389210	NR_151590	ENSMUSG00000096964	Gm6345	EG622708	predicted gene 6345	pseudo	6.68605079850139	6.78177834673087	6.49359472817441	6.69768864758664	6.59246914409212	6.6707529882684	7.00170608030169	6.55681387681483	0.0601310673331609	0.781511594736573	0.914926993310043
Merged-chr12-111912003-4	chr12	111911944	111912144	+	764.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-3989.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	4.23184362330795	4.0158452800816	4.0011343242708	3.92077517696372	4.2777872148947	4.07262696515551	3.82491695900708	4.42497593262822	0.347315068465718	0.421814320868257	0.714235591147837
Merged-chr9-16358019-3	chr9	16357918	16358118	+	955.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	20213.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	3.5141262532443	3.67530981229881	3.84382264815481	3.8323424877698	3.10365567331748	3.25760610435383	3.13585923261076	3.34085929837846	-1.91261933176105	0.000621689274547048	0.00919028470882333
Merged-chr7-30418585-1	chr7	30418485	30418685	+	547.0	f1_c57bl6.idr	intron (NM_011827, intron 2 of 3)	intron (NM_011827, intron 2 of 3)	1269.0	NM_011827	23900.0	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	2.78728615401315	2.69965154531983	2.71990822553929	2.52171281328168	2.80091928287229	2.96237945473096	2.90214154180626	3.18096492231338	1.3470641930633	0.0320054116608613	0.174795764337332
Merged-chr5-74954044-3	chr5	74953932	74954132	+	809.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045866, intron 1 of 4)	intron (NR_045866, intron 1 of 4)	4838.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	3.95409159090793	3.75744038512632	4.3605997339145	4.61689347526527	3.78264512629811	3.96695108076588	4.08674282180806	4.31854279257026	-0.452889867809133	0.356973951467967	0.663238634370609
Merged-chr11-117119338-8	chr11	117119195	117119395	+	983.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 2 of 16)	RSINE1|SINE|B4	4123.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	3.87314122271059	3.86218544585276	4.28051471180671	3.72675189579157	3.98914037279676	4.28496537234246	3.90939201084131	3.92350686214236	0.250679980779344	0.579795240837641	0.815474743074892
Merged-chr14-66242915-4	chr14	66242834	66243034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-29110.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	5.76231969556481	5.49382011053232	5.63850591985406	5.91187416424582	5.75448083691877	5.76007883842016	5.6359478253909	5.58108344242676	-0.063266707573836	0.813183626369018	0.927827605496927
Merged-chr7-58399270-4	chr7	58399160	58399360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-258942.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	8.43370994345333	8.35106543019062	8.75662410311839	8.32666759070305	8.4672212751469	8.43540706780892	8.72873286775272	8.46523386619235	0.0700910195492467	0.685722803939973	0.871574855121218
Merged-chr4-26353882-2	chr4	26353809	26354009	+	759.625	f0_balb.idr|f0_c57.idr	Intergenic	BGLII_B|LTR|ERVK	-7257.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	4.2731881436594	3.80260014941992	4.09894931907585	4.22546565018157	3.98117617620139	4.27027038515794	3.93407023222314	4.18679729715199	-0.0560972857338727	0.896555453553525	0.961155518163813
Merged-chr18-38339565-3	chr18	38339485	38339685	+	821.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011937)	promoter-TSS (NM_011937)	-592.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	3.60955355011771	3.8693867470441	3.71924283722483	4.01274970368644	3.86957859562094	3.72621934702835	3.53922889779981	3.66381112106731	-0.336886991832983	0.483784309631894	0.758018917304054
Merged-chr7-135654571-4	chr7	135654402	135654602	+	825.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316681, intron 3 of 17)	intron (NM_001316681, intron 3 of 17)	-2188.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	3.50763160198616	3.3836907364919	3.45178432986964	3.61436499297742	3.57556789613793	3.56624182598317	3.38097191244343	3.75513940598241	0.245966748043527	0.621265541695288	0.837757076551181
Merged-chr13-105341000-4	chr13	105340883	105341083	+	785.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46498.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	4.46652861772378	4.35333403723573	4.50842204737619	4.98013918343027	4.36187610193294	4.20605019899877	4.40480956155067	4.54536172431281	-0.537883776260359	0.183336385910301	0.480245118783694
Merged-chr3-144697337-4	chr3	144697245	144697445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 8 of 10)	(T)n|Simple_repeat|Simple_repeat	22990.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	6.47131543048487	7.07907386232432	6.61337487518826	7.10045258927155	7.39017695780252	6.93252236423549	6.91306578653267	6.75039115987887	0.236246365357441	0.351118591657745	0.658624098847102
Merged-chr2-84642268-1	chr2	84642168	84642368	+	652.0	f0_balb.idr	intron (NM_007615, intron 1 of 19)	PB1D10|SINE|Alu	7212.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	3.55183855961753	3.27783475353105	3.39782757819922	3.35386438345456	3.47299619523867	3.19867952018497	3.43784946892764	3.33988633008062	-0.080087017107027	0.877965776609109	0.954314763971155
Merged-chr7-145283232-4	chr7	145283132	145283332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132643, intron 1 of 22)	intron (NR_132643, intron 1 of 22)	779.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	8.08540104198083	7.93798188104012	8.43442053895875	8.50822066724462	7.91011826739728	8.11337948947517	8.17102746111486	7.98738802238142	-0.284326901446281	0.138357057026503	0.413803813693409
Merged-chr5-100518310-4	chr5	100518220	100518420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012001)	promoter-TSS (NM_012001)	11.0	NM_001359204	26891.0	Mm.957	NM_012001	ENSMUSG00000035297	Cops4	AW208976|D5Ertd774e|SGN4	COP9 signalosome subunit 4	protein-coding	8.74834232420594	8.82919759533559	8.63269798544292	8.85938458809797	8.59984642055519	8.51423660790544	8.8796170001796	8.52794708267762	-0.167900958714181	0.295289960602197	0.607360011623083
Merged-chr13-34046567-4	chr13	34046469	34046669	+	992.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026512, intron 2 of 6)	intron (NM_026512, intron 2 of 6)	8928.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	4.96390708736574	4.93656584171835	4.66847010500716	4.65307767862647	4.80287779995237	5.10276162132471	4.97280306250316	4.57952265648941	0.142853372756563	0.679777820659026	0.86857902618052
Merged-chr16-45666362-4	chr16	45666265	45666465	+	974.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172455, intron 12 of 17)	Lx7|LINE|L1	-12247.0	NM_145389	212998.0	Mm.97511	NM_145389	ENSMUSG00000033187	BC016579	-	cDNA sequence, BC016579	protein-coding	4.69871796126122	4.70700319426409	4.92481861958193	5.48686382028086	5.7115877590375	5.61078451405098	6.06505709332673	5.61414805357932	1.28411743072509	0.000448326853127457	0.00706318217768023
Merged-chr8-84687856-4	chr8	84687756	84687956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025788)	promoter-TSS (NM_025788)	6.0	NM_025788	66830.0	Mm.289698	NM_025788	ENSMUSG00000001910	Nacc1	2010001H03Rik|4930511N13Rik|Btbd14b|Nac1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	protein-coding	6.0854449111824	6.38841302994155	6.08652020737068	6.03372620606021	6.09711822410491	5.77010100846599	5.92637756239126	6.08217108694141	-0.263818385120763	0.285864952693946	0.597491747696443
Merged-chr5-118636972-4	chr5	118636893	118637093	+	947.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	76274.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	4.70877858537785	4.46706373916282	4.44528000461761	4.39729132598037	4.27181273154845	4.44130921483535	4.19842543837522	4.59997778927979	-0.278259122547477	0.466240954141756	0.746318952815707
Merged-chr10-42697232-4	chr10	42697119	42697319	+	828.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172416, intron 4 of 5)	intron (NM_172416, intron 4 of 5)	18303.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	3.88010749220509	4.06238830776139	3.88064944577152	3.75747008432438	3.99468650729636	4.00242871777179	4.18592187604566	4.16115239599797	0.529876899079959	0.210441982418957	0.514938632012065
Merged-chr2-75659803-4	chr2	75659670	75659870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146130, intron 1 of 10)	CpG	480.0	NR_033513	627828.0	Mm.459502	NR_033513	ENSMUSG00000092086	Gm6793	EG627828	heterogeneous nuclear ribonucleoprotein A3 pseudogene	pseudo	7.60890974820015	8.05830437873447	8.08834526845221	7.50525174548089	7.98809367574846	8.20872044261397	7.84862441025632	7.90305678541925	0.205114642310785	0.318993658514338	0.630835151818189
Merged-chr1-105781859-3	chr1	105781724	105781924	+	892.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	1101.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	3.16251491036054	3.18616426306249	3.36794802038165	3.08649338257205	3.05033757884556	2.80573260963722	2.97414435540823	2.91722698326431	-1.06755728229315	0.0787200425968961	0.30363140305649
Merged-chr14-65069468-2	chr14	65069368	65069568	+	734.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360385, intron 2 of 5)	intron (NM_001360385, intron 2 of 5)	28638.0	NM_018788	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	3.61817059123901	3.24371863580234	3.18514665681221	3.10543415734025	3.33067194424289	3.42202130694068	3.40620485492856	3.36340482635135	0.309731101845011	0.566498045676021	0.807900514541786
Merged-chr6-136468580-4	chr6	136468492	136468692	+	814.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50259.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	4.22460240069794	3.85449079496215	3.82240378256133	3.89184618206993	3.94147483745888	3.71045438970222	3.80705714680802	3.96905330055991	-0.24593583715932	0.584764717803601	0.817740036317141
Merged-chr18-12939342-4	chr18	12939246	12939446	+	858.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 1 of 27)	intron (NM_207530, intron 1 of 27)	2495.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	3.89628709846163	3.97685072175713	3.95047403598657	4.62062506103723	4.00742043468491	3.90352920296062	4.03440501487819	4.38822798981574	-0.186179137477252	0.700429561617258	0.879152793495826
Merged-chr1-172470194-3	chr1	172470088	172470288	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	-5172.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	3.57076699800374	3.36097394355395	3.57126098449772	2.47844458361099	5.23453480305837	5.4912556687434	5.39755917256524	5.44563738433513	8.1047657865171	3.90567392647695e-23	1.95776031276551e-20
Merged-chr2-43761984-4	chr2	43761868	43762068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 1 of 14)	intron (NM_001301831, intron 1 of 14)	13144.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	5.16473896346813	5.20218086717471	5.50827384824235	5.35094707339328	5.1010536179105	5.54866233719402	5.14030126337277	4.82746362575516	-0.256977962718673	0.423869837138314	0.715735108934157
Merged-chr6-5589834-4	chr6	5589721	5589921	+	943.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93543.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	5.25176641194073	4.80975897727781	4.59781104409816	5.24875947796992	5.18419529821209	5.14097019195178	4.83191094568425	5.22026309892295	0.160813726042941	0.647071660503192	0.851605116430591
Merged-chr2-150787445-4	chr2	150787344	150787544	+	934.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 1 of 19)	intron (NM_153781, intron 1 of 19)	648.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	3.8221538424449	3.90576416040179	4.1143388804994	4.00827174793141	4.03692074937382	3.94267854495089	4.00696712463395	4.02187573230509	0.0944932351248422	0.82260648969436	0.932143478460956
Merged-chr7-104465618-3	chr7	104465504	104465704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	promoter-TSS (NM_009099)	promoter-TSS (NM_009099)	-411.0	NM_009099	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	5.95004683694849	6.25876836447791	6.1052647691684	5.9853062727775	6.25552918849175	6.43514273496403	6.26577369146623	6.05865227621524	0.280839598430005	0.233276573002505	0.542875602881884
Merged-chr18-7693110-4	chr18	7693035	7693235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-66272.0	NM_001161620	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	5.13153976048889	4.83566485183897	5.13240404948276	5.1937192625729	5.40947000621901	5.68963569743469	5.51478281427525	5.51380174339191	0.791010004145906	0.00708875152324242	0.0614654945392705
Merged-chr2-136915236-4	chr2	136915115	136915315	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	15864.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	5.00222245148134	5.12070575992847	4.96703370241836	5.18024062620008	5.11236732307169	5.4305149577473	5.04757155940628	4.99969696675951	0.137931143633207	0.657346044222321	0.857212576840786
Merged-chr5-117363600-1	chr5	117363500	117363700	+	825.0	f1_balb.idr	exon (NM_021539, exon 2 of 9)	exon (NM_021539, exon 2 of 9)	6295.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	3.17245432226	3.15185102309038	3.32928524084341	3.26199290705322	3.02738907382266	2.81690632670046	2.78140867504099	3.11449042930477	-1.19182207431747	0.0533139558562559	0.240914541752208
Merged-chr4-55364099-3	chr4	55363999	55364199	+	856.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009011, intron 1 of 9)	MIRc|SINE|MIR	14057.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	4.66557236283859	4.15976952277859	3.92586150433784	4.66285455210324	3.66661720741667	3.87127576101876	3.96384548684463	4.26382631252153	-1.13533125466879	0.0187755890651725	0.122698095305721
Merged-chr5-140733491-4	chr5	140733399	140733599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	MTE2a|LTR|ERVL-MaLR	9372.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	7.44811717539429	7.36738738407363	7.32164149487005	7.53164458482332	7.22148078543571	7.42416985754966	7.40315451307431	6.97377582700227	-0.214781350665805	0.262514685533729	0.574303319449388
Merged-chr11-20113411-2	chr11	20113306	20113506	+	1000.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_146243)	promoter-TSS (NM_146243)	-455.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	5.73395049378311	6.22597787495271	5.83737322785623	6.17769955988217	6.15643114906046	6.2367462935113	5.75789974578507	5.83323323065451	-0.0144260286318807	0.957541856335743	0.984850737934993
Merged-chr14-65102591-3	chr14	65102493	65102693	+	870.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4487.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	4.07254869945953	3.69302427852541	3.61815714365615	3.81561127164637	3.93550182312315	4.24009005439809	3.77283798928434	3.67532905662679	0.315693339721126	0.504907228712033	0.771119418797875
Merged-chr8-34124125-4	chr8	34124008	34124208	+	733.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001126314, exon 3 of 3)	exon (NM_001126314, exon 3 of 3)	9078.0	NM_001126314	234155.0	Mm.324008	NM_001126314	ENSMUSG00000071113	Mboat4	GOAT|Gm171	membrane bound O-acyltransferase domain containing 4	protein-coding	3.89908623380186	3.91877692538608	3.61835640982693	3.8795267227658	4.27843266233522	3.73657736331137	4.06935081158613	4.12803953926218	0.645320746289916	0.151837809670912	0.435599671700691
Merged-chr11-104544735-4	chr11	104544647	104544847	+	868.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145436, intron 1 of 18)	intron (NM_145436, intron 1 of 18)	5873.0	NM_001285990	217232.0	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	4.10050858827469	4.29367654261166	4.49171330695849	4.04477484769982	4.26324428791817	4.62254554409194	3.97972114751196	4.24229135135312	0.143658592021451	0.734611377406137	0.895082097863042
Merged-chr8-124922703-4	chr8	124922590	124922790	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053207, intron 1 of 4)	URR1A|DNA|hAT-Charlie	24804.0	NM_001111141	244666.0	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	6.57367811565601	6.69900226655077	6.73097728103521	6.41538020679796	5.39220209066875	5.41328026921169	5.07498028172488	5.3328995887632	-2.07713627472534	8.96043980674902e-15	1.40126770475235e-12
Merged-chr6-16965851-4	chr6	16965754	16965954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67413.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	6.47355146882861	6.4136500635891	6.13205912189306	6.49467632924496	6.21882202251098	6.13141301417687	6.05912447367094	5.97461019223744	-0.442097992350101	0.0575451985882496	0.251767760176595
Merged-chr11-93996831-4	chr11	93996696	93996896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027569, intron 1 of 28)	intron (NM_027569, intron 1 of 28)	705.0	NM_027569	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	6.72815381681333	7.19068933467017	6.81579968005978	6.66736716232008	6.83615770468827	6.8911589937472	6.83544014193399	6.59924888318006	-0.0941090955394198	0.669821772271876	0.863656126023693
Merged-chr16-91839623-4	chr16	91839521	91839721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010587, exon 18 of 39)	exon (NM_010587, exon 18 of 39)	92009.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	6.59103661046828	7.03628876542445	7.12110746713196	7.11420138518419	7.11281649095352	7.22749989909034	7.1077121981219	6.71868116900573	0.0903748546826516	0.683899920092118	0.870485898434192
Merged-chr4-87863402-4	chr4	87863294	87863494	+	654.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027326, intron 4 of 10)	intron (NM_027326, intron 4 of 10)	-57071.0	NM_029931	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	3.56422043337908	3.10264651856156	3.45136928584224	3.24633866008968	3.77986409918004	3.44373963266022	3.65305559053298	4.0138643974787	1.27809414004308	0.0149163659004396	0.104408693915566
Merged-chr3-115704442-4	chr3	115704342	115704542	+	725.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10613.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	4.04425662623184	3.98266760317937	4.40810400154685	4.20327761059363	4.23571012803928	4.22149761061911	4.38751744783264	4.481739040018	0.399961996037075	0.318112639775046	0.63003757714634
Merged-chr5-73540331-3	chr5	73540263	73540463	+	785.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153313, intron 7 of 9)	intron (NR_153313, intron 7 of 9)	49337.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	3.10858828736539	3.00349304620233	3.05015282055319	3.29620784949529	3.17329195090811	2.88881845132318	2.84805174889878	3.21722107650856	-0.321421311741659	0.597065577993128	0.825072362827406
Merged-chr18-62548851-4	chr18	62548734	62548934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177829)	promoter-TSS (NM_177829)	29.0	NM_134136	107035.0	Mm.21295	NM_134136	ENSMUSG00000042211	Fbxo38	6030410I24Rik|AU044865|AW214031|Moka|SP329	F-box protein 38	protein-coding	8.57408334017926	8.71143034364506	8.45445550116981	8.54456572792151	8.46836714680105	8.42231194254156	8.54519116345601	8.20266574143467	-0.198685024057273	0.21237898435009	0.517342055876223
Merged-chr2-172477940-3	chr2	172477858	172478058	+	949.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5404.0	NM_029608	76426.0	Mm.46148	NM_029608	ENSMUSG00000027505	Fam209	1700029J11Rik	family with sequence similarity 209	protein-coding	3.88988226629284	3.51519348416324	3.84700510863001	3.93362490839533	3.1836448015162	3.48471229251093	3.29312851936426	3.54676359666728	-1.45345480347704	0.00634150433891413	0.0564862892428443
Merged-chr2-73911342-4	chr2	73911241	73911441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175015)	promoter-TSS (NM_175015)	-15.0	NM_001301722	228033.0	Mm.2966	NM_175015	ENSMUSG00000018770	Atp5g3	6030447M23	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)	protein-coding	6.79329390676788	6.84511221035469	6.36158086344413	6.62273359946437	7.04203849456742	6.97086829753455	6.801340456048	6.93573101106475	0.387292455612272	0.0658406802184538	0.273206191884195
Merged-chr17-17889880-4	chr17	17889775	17889975	+	978.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008039, intron 1 of 1)	intron (NM_008039, intron 1 of 1)	2051.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	5.47882289896031	5.3733153622185	5.00463963689404	5.14126520601919	6.01607565042218	6.01928408315943	5.56021553000444	5.53146500803557	0.944575289310218	0.00152696842316639	0.0189451081388462
Merged-chr2-27565543-3	chr2	27565445	27565645	+	895.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50398.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	3.97061874870497	4.05322149033166	3.87979217290689	3.67354152086242	3.4837525038941	3.84891263204194	3.6041235936966	3.61587194083122	-0.777021369386382	0.107539494441929	0.361609678518616
Merged-chr8-78626839-4	chr8	78626746	78626946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009981, intron 5 of 10)	intron (NM_001009981, intron 5 of 10)	117518.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	6.22557425183697	5.93086684489195	6.38264383166462	6.40033811531972	5.81741108009013	5.88810750975362	5.86002075254798	6.04411156989011	-0.551542551421127	0.0268610870939952	0.155780738349564
Merged-chr14-70351445-4	chr14	70351364	70351564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135151)	promoter-TSS (NM_001135151)	-40.0	NM_001135151	213053.0	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	7.18617607837908	6.97178262725734	6.65941410716499	6.80089839303582	7.19594038814448	6.90124333760763	7.3027478014551	7.0094533192056	0.279058792157182	0.191603953893523	0.490975870844874
Merged-chr9-119322841-4	chr9	119322772	119322972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045693)	promoter-TSS (NR_045693)	-445.0	NM_133985	108737.0	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	8.67314582869793	8.89801796107172	8.54715194135235	8.48709325414101	8.98632584347912	9.16807656849838	9.05302228008843	8.87888750770091	0.456258480849029	0.00532867255839623	0.0498213035641777
Merged-chr12-40431748-3	chr12	40431636	40431836	+	803.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172575, intron 1 of 12)	RMER6B|LTR|ERVK	14054.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	3.11286426462641	3.37004398781222	3.29654491478691	3.54629070021705	3.12889022650307	3.3485327476934	3.39259604881939	3.35077977975348	-0.179763079819477	0.744849387920819	0.899357438330432
Merged-chr1-179803813-4	chr1	179803733	179803933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026375, exon 1 of 36)	5' UTR (NM_026375, exon 1 of 36)	182.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	8.63240351225775	8.77579876060285	8.50401339851391	8.53552558299423	8.36109748369718	8.42803962425184	8.53115763712117	8.14529258764631	-0.304825608351675	0.0629504081818907	0.266046022086379
Merged-chr5-105515508-4	chr5	105515384	105515584	+	951.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3987.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	5.50853463635867	5.31850185580707	5.43201037200857	5.6515795550082	5.35318053552908	4.88061023865767	4.57855436895347	5.12912411403184	-0.836746408677307	0.014127960086823	0.100610907986104
Merged-chr7-101933962-4	chr7	101933860	101934060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027053)	promoter-TSS (NM_027053)	-103.0	NM_001162974	69358.0	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	8.24270058559295	8.29869305415431	7.71491502124745	8.22950387441252	8.15393080010798	8.0473171501688	8.07395353934793	8.16861119815198	-0.042950971637978	0.814669085549007	0.928450922894402
Merged-chr11-68973645-6	chr11	68973557	68973757	+	977.5277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001285442, exon 1 of 5)	exon (NM_001285442, exon 1 of 5)	198.0	NM_021329	57785.0	Mm.143774	NM_021329	ENSMUSG00000032892	Rangrf	2400006H24Rik|Mog1|Rangnrf	RAN guanine nucleotide release factor	protein-coding	3.77878693734778	4.07937814810005	4.07411072447673	3.01832721738495	3.74426960564482	4.2022418562295	3.65007245758724	4.19670349270038	0.427025420645196	0.465338957812904	0.745811792142008
Merged-chr3-51727935-1	chr3	51727835	51728035	+	672.333313	f0_balb.idr	intron (NM_001004176, intron 2 of 4)	L3b|LINE|CR1	66756.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	3.2397069100126	3.15662110102425	3.24019036902807	3.26244405734212	2.58279060981803	2.84819630180221	2.94094088138878	2.94945102355605	-1.81940411829765	0.00596641680915681	0.0540172452377223
Merged-chr14-26441240-4	chr14	26441136	26441336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 14 of 22)	PB1D10|SINE|Alu	83689.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	5.26527367622914	5.49645574252426	5.32950454175722	5.50041315720708	5.42672076459451	5.50460036693762	5.57768148745371	5.44367739346472	0.127308169601112	0.643408946769734	0.849638332939833
Merged-chr11-4118698-4	chr11	4118613	4118813	+	863.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144520)	promoter-TSS (NM_144520)	16.0	NM_144520	67815.0	Mm.253922	NM_144520	ENSMUSG00000003585	Sec14l2	1300013M05Rik|Spf|TAP	SEC14-like lipid binding 2	protein-coding	3.07203500694826	3.12218923309074	3.00929931575064	2.84450585705795	3.07443943461094	3.1195827536358	3.28395569369172	3.29610559519076	0.75435793061664	0.182050693597845	0.478744830221339
Merged-chr7-139248257-4	chr7	139248141	139248341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033206)	promoter-TSS (NM_001033206)	-241.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	7.44918751550942	7.57467839876358	7.69713474273755	7.29257274235904	7.47527340328174	7.89792648912637	7.50708985309038	7.59210210034532	0.159338260040054	0.413365011143532	0.708338880200893
Merged-chr7-43544621-7	chr7	43544529	43544729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-11458.0	NM_021293	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	5.91167783572547	5.54833759993178	6.07155715278239	5.18053510373385	5.32049655422409	5.85632168133781	5.54649410524973	5.92945250684241	-0.0482791395056917	0.88471877269745	0.956700019808816
Merged-chr3-109026824-4	chr3	109026694	109026894	+	903.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163567, intron 1 of 10)	intron (NM_001163567, intron 1 of 10)	813.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	3.57275331919702	4.22703263346306	4.01159437945608	3.8984061316845	4.25550014946688	4.19195785484274	4.70978305525284	4.73065994614475	1.32959350338237	0.0035777617581616	0.036684169430162
Merged-chr12-35039795-4	chr12	35039704	35039904	+	966.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7385.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	5.71771319844207	5.52886744601374	5.52642002348541	5.7121857659515	5.1780370427441	5.20271711833506	4.96017856418782	5.19874290720813	-0.877660454120944	0.00216146057975646	0.0248306330869085
Merged-chr16-18289032-1	chr16	18288932	18289132	+	1000.0	f0_c57.idr	intron (NM_033324, intron 1 of 13)	CpG	136.0	NM_033324	94223.0	Mm.447352	NM_033324	ENSMUSG00000022718	Dgcr8	D16H22S1742E|D16H22S788E|D16Wis2|Gy1|N41|Vo59c07|mir-1306	DGCR8, microprocessor complex subunit	protein-coding	6.76570909921462	6.72529547347151	7.02141514555575	6.66239080223644	6.33125326932077	6.7454702808563	6.71832202893881	6.68948501473891	-0.245297954814459	0.267055000170943	0.57870453487891
Merged-chr9-70503312-4	chr9	70503199	70503399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357494)	promoter-TSS (NM_001357494)	79.0	NM_001357494	93836.0	Mm.29783	NM_033604	ENSMUSG00000032217	Rnf111	ARK|Arkadia	ring finger 111	protein-coding	6.98480959936729	6.98196680292223	7.01055443770547	6.74199950530489	6.70984080201788	7.04583712180523	6.90038832254187	6.8779442654562	-0.0590390957215025	0.771020854170574	0.910353175958998
Merged-chr2-32095542-4	chr2	32095451	32095651	+	812.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145521)	promoter-TSS (NM_145521)	23.0	NM_001355238	227721.0	Mm.257236	NM_145521	ENSMUSG00000051373	Plpp7	D830019K17Rik|NET39|Ppapdc3	phospholipid phosphatase 7 (inactive)	protein-coding	4.11867870350899	4.19307777587592	4.25659690151462	4.21471301122639	4.11818075647735	4.24397843813141	4.36014082546915	4.11684343604625	0.0289831306892307	0.94126343796988	0.978832177973057
Merged-chr3-88721193-4	chr3	88721096	88721296	+	848.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028056, intron 3 of 5)	RSINE1|SINE|B4	4342.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	3.99476604911963	3.74728434658641	3.89335520135968	3.76609263638464	4.18721629966153	4.06864346972495	4.38832112845611	4.04103446639059	0.897161706688694	0.0330550130624243	0.178387383997994
Merged-chr6-113047537-4	chr6	113047376	113047576	+	950.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001355266, exon 2 of 10)	exon (NM_001355266, exon 2 of 10)	1174.0	NM_008188	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	4.04586012782035	4.33949465768021	4.24753428525949	4.58757896071849	4.21425612331037	4.1153461761878	4.44087704442917	4.67494459151796	0.0961167712318495	0.820399162454503	0.931216561407907
Merged-chr7-49454792-4	chr7	49454668	49454868	+	963.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 7 of 37)	intron (NM_175272, intron 7 of 37)	182067.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	5.49281302841722	5.69633133484652	5.78404624786513	5.76381779056961	4.73642184894766	5.06231131141412	5.46596616293577	5.37619869879064	-0.909131869642052	0.0041783542105717	0.0414799266881845
Merged-chr4-148607965-3	chr4	148607858	148608058	+	675.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr	exon (NM_001003893, exon 7 of 11)	exon (NM_001003893, exon 7 of 11)	5414.0	NM_001003893	17175.0	Mm.378962	NM_010767	ENSMUSG00000028979	Masp2	MASP-2|MAp19	mannan-binding lectin serine peptidase 2	protein-coding	3.57054901609483	3.59134236731757	3.51234690431265	3.73046520194981	3.96712020064978	3.56576975608903	3.7172751439409	3.918006168651	0.584220105420055	0.221273382762689	0.529396308148268
Merged-chr4-125118152-4	chr4	125118055	125118255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153159)	TTS (NM_153159)	9726.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	7.1776728554438	7.07020522023027	7.23334432609236	7.46479268803769	7.07177519682145	6.93838139280376	6.88531473042494	7.18495674964111	-0.312085083418713	0.118980462737089	0.381671565062115
Merged-chr5-5365554-3	chr5	5365425	5365625	+	805.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	14726.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	2.72206579961528	2.6534272603885	2.72231773757748	2.26189478624803	3.93648174074551	3.74634822274931	3.55217347241201	3.66167997619319	7.63855310151135	9.69436014460325e-15	1.50662633347754e-12
Merged-chr5-31291175-4	chr5	31291085	31291285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026298)	promoter-TSS (NM_026298)	-71.0	NM_026298	67661.0	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	7.80958674431568	7.92752531157712	7.57125371080339	7.80842881844858	8.1512476337119	8.19602343218785	7.94002212954961	8.04569233863849	0.386354991766847	0.0229529492240405	0.140178014724114
Merged-chr15-9127751-1	chr15	9127651	9127851	+	1000.0	f0_balb.idr	intron (NM_013787, intron 3 of 9)	intron (NM_013787, intron 3 of 9)	12703.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	3.09414435917373	2.92996678478071	3.41395116338626	3.85878218901715	2.63479450449727	2.69873168708694	2.82025710091606	2.96657305773977	-2.73283178713417	0.000379815208063222	0.00616530597371314
Merged-chr14-60736774-4	chr14	60736677	60736877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310594, intron 1 of 9)	intron (NM_001310594, intron 1 of 9)	3873.0	NM_001310594	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	8.02449620762025	7.9317306720668	7.79237200152743	7.5137035934293	7.68525586063581	7.74732574340786	7.50526013490536	7.10072429001461	-0.377432396833663	0.079517350376653	0.30534988576067
Merged-chr17-80564774-4	chr17	80564687	80564887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033443)	promoter-TSS (NM_001033443)	-953.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	6.97235518743736	7.41999722362598	7.40653500232437	7.17912293456842	7.42185521128693	7.38582705825053	7.2905005713342	7.46703931038828	0.186047102554938	0.330913133434185	0.642104407905452
Merged-chr5-30998531-3	chr5	30998431	30998631	+	792.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	29854.0	NM_053085	69852.0	Mm.57874	NM_053085	ENSMUSG00000006642	Tcf23	2010002O16Rik|Out|bHLHa24	transcription factor 23	protein-coding	3.17337590055364	2.95902932455822	3.17374300079706	3.29776154694477	3.48574189206588	3.40974505703688	3.58961548225895	3.45851692549917	1.13276064087606	0.0376447426145962	0.193933784652428
Merged-chr17-23774281-4	chr17	23774181	23774381	+	967.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2679.0	NM_001357994	224613.0	Mm.328835	NM_153791	ENSMUSG00000040097	Flywch1	E030034P13Rik|mKIAA1552	FLYWCH-type zinc finger 1	protein-coding	4.97173561900003	4.74824875538819	4.57373272819587	4.72214914767947	5.60866548353987	5.45494291823716	5.68136087725164	5.86789350102544	1.64998344727917	4.62240661685173e-08	2.13731341270873e-06
Merged-chr2-165858230-3	chr2	165858129	165858329	+	954.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252585)	promoter-TSS (NM_001252585)	-56.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	4.33986169490196	4.35850380936877	4.43160812201083	3.94634510631872	4.49730044580418	4.84291745126676	4.84899455049251	4.66857265242881	1.03164424918521	0.00740446482813106	0.0634346227318979
Merged-chr14-79430470-4	chr14	79430369	79430569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001024135, exon 1 of 1)	3' UTR (NM_001024135, exon 1 of 1)	3958.0	NM_001024135	211255.0	Mm.284526	NM_001024135	ENSMUSG00000043881	Kbtbd7	1110008P08Rik|AU045792|Gm295	kelch repeat and BTB (POZ) domain containing 7	protein-coding	5.63547315843598	5.7764316575888	5.8113261175921	5.81440788085743	6.00669923942711	5.67227965233712	5.71028051185604	5.57781937606445	0.000388273697482391	0.998821956448217	0.999467870580851
Merged-chr14-17660910-4	chr14	17660813	17661013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113417)	promoter-TSS (NM_001113417)	-47.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	7.54401595820344	7.4271444964454	7.87358297487218	8.0780456685656	7.38288875028184	7.42504454298277	7.7998764572419	7.56727062223086	-0.281209356998311	0.192972277626458	0.493056707199857
Merged-chr8-46628868-4	chr8	46628762	46628962	+	876.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284409, intron 1 of 6)	intron (NM_001284409, intron 1 of 6)	11571.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	4.93302654444909	4.73789865571959	4.65360307266103	4.91759324327483	4.40791159499065	4.66229283913515	4.32656282912015	4.65056700931161	-0.670920461312356	0.0606083908983618	0.260085889898987
Merged-chr12-8667670-4	chr12	8667589	8667789	+	869.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6445.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	4.39379676040906	4.63560660856585	4.39447631808351	4.60368090852326	4.28921788431329	4.17522016742952	4.53518075087805	4.39172790186058	-0.388677231386007	0.305407803630287	0.617813594931132
Merged-chr13-12462012-1	chr13	12461912	12462112	+	865.3333130000001	f0_balb.idr	promoter-TSS (NM_018886)	promoter-TSS (NM_018886)	-274.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	4.73434220151881	4.42588285858872	4.38409868352676	5.02699974553031	4.36479078474614	4.15113458989067	4.40830115426555	4.38137888191336	-0.808056095663493	0.0463174496434123	0.22114500591417
Merged-chr9-22225286-3	chr9	22225184	22225384	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172763)	promoter-TSS (NM_172763)	-419.0	NM_172763	235047.0	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	4.94725019983602	5.3070065354774	5.21172752939375	4.97827022068585	5.03200105538707	5.25972646718274	4.81075424060236	5.0158927153073	-0.147436065937503	0.646127600535216	0.851230685864498
Merged-chr1-152904675-4	chr1	152904569	152904769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2023.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	7.5833926489372	7.59078489177782	6.99450176052753	7.26153569489773	7.43693880331024	7.41566135513719	7.45164002761946	7.02927899905307	-0.0431920585180437	0.842033083628304	0.940096405454667
Merged-chr1-154175551-4	chr1	154175456	154175656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-25631.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	5.36453137322544	5.36648595952888	5.39484812485965	6.08741705012849	5.47128179853683	4.71153616496152	5.27822150095484	5.44782047812923	-0.601896539186566	0.0974288330778074	0.342005234621681
Merged-chr17-28208206-3	chr17	28208116	28208316	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027185, intron 1 of 10)	intron (NM_027185, intron 1 of 10)	438.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	4.30885641749761	3.8830940115231	3.57701609953154	3.56260461201813	3.30246178583109	3.24041665837086	3.11520677913289	3.39895382890561	-2.02576598993077	0.000648955478911561	0.00949866379466296
Merged-chr10-93242344-4	chr10	93242242	93242442	+	942.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_146239)	TTS (NM_146239)	68817.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	4.16785410654014	4.62743459251804	5.18237928938534	5.17821369265817	4.51197659782453	4.41236565812974	5.0149070845437	4.80603708694554	-0.315010244589886	0.473414411989863	0.7511674042147
Merged-chr11-40733989-4	chr11	40733861	40734061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013552)	promoter-TSS (NM_013552)	300.0	NM_001290697	52653.0	Mm.276504	NM_026023	ENSMUSG00000020328	Nudcd2	-	NudC domain containing 2	protein-coding	5.98034727042373	5.94680701878446	6.54874402681958	5.97848094514736	5.88505050444119	5.96622122640737	5.97294783377252	6.23916147430654	-0.172289666107121	0.519000006043016	0.779800557895194
Merged-chr3-88718050-4	chr3	88717930	88718130	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028056, intron 3 of 5)	intron (NR_028056, intron 3 of 5)	1176.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	5.21398748737103	5.09713853617633	5.42994628839214	5.39284772545043	5.56247408319724	5.2527943136887	5.56070977687123	5.72606447292137	0.426447204850803	0.141710873009461	0.418839287836592
Merged-chr19-5931756-4	chr19	5931653	5931853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6937.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	8.33384646528583	8.51978515337096	8.23614057852695	7.87683062981714	8.07478290663224	8.20212181602199	8.04555386278726	7.76405319937755	-0.288434671328237	0.147689891560295	0.428990768878605
Merged-chr3-108259571-2	chr3	108259471	108259671	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011967, intron 1 of 8)	intron (NM_011967, intron 1 of 8)	2645.0	NM_011967	26442.0	Mm.208883	NM_011967	ENSMUSG00000068749	Psma5	ZETA	proteasome (prosome, macropain) subunit, alpha type 5	protein-coding	2.55490564219935	2.55035539528455	2.5551539992675	2.44257190239204	2.87646176582	3.10266659691527	2.74904793798295	2.81937647912334	1.837657025935	0.00444015831484966	0.043493536938166
Merged-chr3-105892045-4	chr3	105891940	105892140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-12381.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	5.41183871680818	5.11095689168736	5.08823186622932	5.02673423992496	5.09502213964391	5.04657958650834	5.09643375815581	5.24251163206073	-0.0650276464135399	0.831816967574674	0.935649586596462
Merged-chr10-51824093-4	chr10	51824007	51824207	+	948.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-66913.0	NR_045158	71090.0	Mm.72588	NM_027670	ENSMUSG00000062224	4933411G06Rik	-	Sumo1 pseudogene	pseudo	4.54921748789673	4.39289526361432	4.54994171439468	4.4677292494915	4.74681399340694	4.68151607406579	4.67984843688999	4.32713924870994	0.303161395104285	0.40009626269156	0.698035489046584
Merged-chr2-5951417-4	chr2	5951319	5951519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081132)	promoter-TSS (NM_001081132)	-50.0	NM_001081132	326622.0	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	6.5760745678754	6.4324972337314	6.25969114785573	6.11473656134238	6.52054158133686	6.67272778886574	6.80822496616878	6.50861100324417	0.420828265119008	0.0657988360956458	0.273106032681321
Merged-chr6-122874062-3	chr6	122873901	122874101	+	850.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026267)	promoter-TSS (NM_026267)	-556.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	3.20514120076346	3.04858479152107	3.32833186157879	3.25171124529674	3.40815366227887	3.44281988342745	3.52852584530849	3.68205766247946	1.05669623668547	0.0432412508196506	0.211631769358518
Merged-chr16-75986699-2	chr16	75986599	75986799	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14085.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	2.61907040996248	2.52448093641864	2.6194294967619	2.83139161992102	2.2598431758384	2.31051580251133	2.2832471629205	2.28768762107137	-2.47897214041785	0.0030403757329329	0.032314604195077
Merged-chr10-117982759-3	chr10	117982660	117982860	+	997.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57301.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	4.5763488790642	4.88985052695138	4.46010801791706	4.36767619651777	4.58026585172017	4.09521532216577	4.06701105238274	4.1344574937698	-0.775409203634475	0.070621664388623	0.284867927548328
Merged-chr1-144197911-4	chr1	144197828	144198028	+	910.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20556.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	4.93034785496246	4.42047039615555	4.49567166027681	4.92539076165224	4.44678657069417	4.75239182823637	4.43182285149353	4.40337765876786	-0.465332511600423	0.224716243939802	0.533204797899567
Merged-chr17-29398370-5	chr17	29398371	29398571	+	946.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37557.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	5.45026090904962	5.09315491529834	4.97206645292162	4.94924652243687	5.64165600593369	5.45461013632552	5.25426581719537	5.36498287612933	0.592317205435449	0.0540993242712954	0.242856224853906
Merged-chr6-92987953-3	chr6	92987845	92988045	+	974.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	47363.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	3.80917589777112	3.67520314019473	3.93180633499819	3.89481249582472	2.80807894862354	3.12559166900388	3.00138351014766	2.92924068536132	-4.22421540233268	3.60653173104748e-07	1.37571983967968e-05
Merged-chr11-48872426-4	chr11	48872328	48872528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1008.0	NM_008326	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	6.04844704129895	5.68464159067583	5.83186262012233	6.32857199543304	5.80377179143793	5.68805021289046	5.70406245844618	5.77932123497153	-0.432475355004318	0.116408826717854	0.377476808870985
Merged-chr10-94035978-4	chr10	94035865	94036065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304572)	promoter-TSS (NM_001304572)	-36.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	8.45827283784516	8.59176785243993	8.46956729651756	8.36528047448101	8.23813393963236	8.57607398972299	8.25562138474562	8.21878285714802	-0.182192478765924	0.266741233788378	0.578412011571148
Merged-chr7-127479928-3	chr7	127479779	127479979	+	908.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5342.0	NM_010183	14123.0	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	3.24226003489259	3.69784982908598	3.76938899673824	3.11281614695888	3.62557448772105	3.67968808191002	3.844486138006	3.85987895754538	0.862549053230051	0.109468229407627	0.365263113300955
Merged-chr3-89953627-3	chr3	89953544	89953744	+	758.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081182, intron 11 of 27)	intron (NM_001081182, intron 11 of 27)	9688.0	NM_001081182	54667.0	Mm.30455	NM_001081182	ENSMUSG00000060671	Atp8b2	Id	ATPase, class I, type 8B, member 2	protein-coding	3.48679980160803	3.80397886848853	3.43067871240897	3.43498471697203	3.41314147056901	3.48539981825909	3.35959755143484	3.59140582190001	-0.276665625046273	0.58731526478738	0.819118136850477
Merged-chr10-44598882-4	chr10	44598801	44599001	+	975.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140153.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.86062746862641	4.57924319893887	5.0597079496372	5.31239378719448	4.80287947032812	4.67074150605036	4.64726068977805	4.74617519705449	-0.563229262784949	0.122229080411792	0.387413444121253
Merged-chr8-117121465-4	chr8	117121375	117121575	+	931.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021486, intron 7 of 10)	intron (NM_021486, intron 7 of 10)	25610.0	NM_001163028	63857.0	Mm.174133	NM_021486	ENSMUSG00000031845	Bco1	Bcdo|Bcdo1|Bcmo1|CMO1|Cmoi|beta-CD|betaCMOOX	beta-carotene oxygenase 1	protein-coding	4.58528191976752	4.56175422117529	4.58601390514247	4.55659730936253	4.35951700811077	4.79802851945564	4.67977279908092	4.7707568480547	0.176902985087769	0.620659719136826	0.83740120836379
Merged-chr2-71662200-4	chr2	71662092	71662292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	Arthur1|DNA|hAT-Tip100	-57225.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	6.05619417197064	6.18282929620276	6.14068701970918	6.16519940053959	6.2422263516354	5.86436738203026	6.16810057205659	6.37436591215152	0.0630474444269218	0.790193464859177	0.918828686312538
Merged-chr14-75011189-4	chr14	75011084	75011284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 3 of 3)	intron (NR_030568, intron 3 of 3)	-4843.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	6.39896443006922	6.22046817318907	6.53004317387881	6.48310691728412	6.15683575113351	6.28994277154114	6.41739773910244	5.92393971265723	-0.313063976732168	0.184015191881269	0.48125702884897
Merged-chr7-141464009-3	chr7	141463915	141464115	+	996.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152220)	promoter-TSS (NR_152220)	-111.0	NR_152220	100126795.0	Mm.386851	NR_152219	ENSMUSG00000073787	Gm10575	-	predicted gene 10575	ncRNA	4.57015314395012	4.22806874449854	4.60742853828966	4.81223296466135	4.33596410969118	4.14942925924341	4.16640848348349	4.23059577149503	-0.837191827776878	0.0376609446429697	0.193970215538491
Merged-chr15-77610454-3	chr15	77610360	77610560	+	934.8444210000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB1|LINE|L1	-14335.0	NM_177820	328561.0	Mm.379486	NM_177820	ENSMUSG00000050014	Apol10b	9130218O11Rik	apolipoprotein L 10B	protein-coding	3.29619041143966	3.6511923972577	3.57229456792147	3.18331300815143	4.18709518164271	4.21490644483015	4.18726431736281	4.08397591763809	2.22366663952798	2.57102766428168e-06	8.21747544301326e-05
Merged-chr2-16131749-4	chr2	16131641	16131841	+	986.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 33 of 38)	L2|LINE|L2	-224563.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	4.05816518522016	3.57976916500873	4.05874883774257	4.54693193609244	4.6992433296895	3.95222250760656	4.5207322025638	4.77266422347886	0.942029724249172	0.0709546340178525	0.285685539861454
Merged-chr1-40330664-3	chr1	40330566	40330766	+	654.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356478, intron 4 of 10)	intron (NM_001356478, intron 4 of 10)	6077.0	NM_133193	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	3.61334953876305	3.48007130316504	3.50293841407079	3.67857105442234	4.19578759261822	3.36180520047136	3.59930705971884	3.38020888773495	0.374454139833689	0.501106744550178	0.769095113768232
Merged-chr2-49411851-4	chr2	49411750	49411950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39636.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	5.84817759984458	5.80824459625507	5.97981910901232	5.73167331289851	5.75523533529307	5.90429213842707	5.94918957378481	5.31204957580609	-0.138136035470419	0.613674761940088	0.833443157415255
Merged-chr6-149040300-2	chr6	149040200	149040400	+	959.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177192, intron 6 of 20)	intron (NM_177192, intron 6 of 20)	61380.0	NM_177192	320560.0	Mm.426874	NM_177192	ENSMUSG00000030313	Dennd5b	9330160C06Rik|AI852444|D030011O10Rik|Gm17524	DENN/MADD domain containing 5B	protein-coding	2.97981574592096	2.8302788695914	3.10398561382887	2.89706916689665	3.11111219811038	3.15464804431203	3.0325940128011	3.41442139889373	0.94025205863713	0.1026272494153	0.351907938439718
Merged-chr8-83743086-4	chr8	83742987	83743187	+	796.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-1776.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	3.76422152855151	4.00732279719213	3.82517115491107	3.63303494085128	3.91483522168304	4.40451442975158	4.33431905060413	4.81054267057856	1.51127643256617	0.0010237271319377	0.0136995438097751
Merged-chr1-80335276-4	chr1	80335151	80335351	+	850.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016716, intron 1 of 15)	intron (NM_016716, intron 1 of 15)	5439.0	NM_001313728	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	4.17508581264488	3.83915789852445	4.13397487878476	4.18979904418208	3.83735943661598	3.79974549451714	3.40540330358681	4.17303832358623	-0.719776435471249	0.145053342885945	0.424335108777044
Merged-chr6-113078585-4	chr6	113078464	113078664	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028385, intron 1 of 21)	intron (NM_028385, intron 1 of 21)	925.0	NM_028385	72895.0	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	5.06569342339738	5.51851967078762	5.30714776679515	4.79137567927357	5.90938141449927	5.94623364206168	5.39942942050948	5.23918284658853	0.83067592940619	0.0153534741578506	0.106619018251868
Merged-chr11-55013063-4	chr11	55012940	55013140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 3 of 24)	intron (NR_138556, intron 3 of 24)	20431.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	7.13694253497829	6.96545473761476	7.01018765279161	6.98213513920694	6.79437130919801	6.77069511240297	7.08007320994083	6.8349853343989	-0.205292011692449	0.293530543982602	0.606013394135677
Merged-chr11-4536126-4	chr11	4536027	4536227	+	833.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028860, intron 1 of 17)	L1MB8|LINE|L1	58688.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	4.38315239052156	4.26467679653234	3.91089924792786	4.38227798962995	3.87323055254907	4.34147748573656	4.24013818333493	4.25659889640725	-0.188565217378602	0.660032305675899	0.858704732057902
Merged-chr18-82821666-4	chr18	82821559	82821759	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	-34238.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	4.67049841953523	4.96378878011939	5.06164816705854	5.06608328832581	5.0188469746327	4.71892011788138	4.42633574570133	4.78697974165836	-0.385177689267453	0.281591187559141	0.593701988722515
Merged-chr16-4902562-4	chr16	4902472	4902672	+	818.174988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	16472.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	4.29949605547774	4.12262657909388	4.16261107522721	4.49309996791656	4.29483086578392	4.47102165191646	4.44209448481857	3.89344143847741	0.00893237043555495	0.983118717194135	0.993954904921116
Merged-chr6-86397723-4	chr6	86397593	86397793	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025823)	promoter-TSS (NM_025823)	-543.0	NM_025823	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	4.38944536268698	4.61723312028669	4.73817480310888	4.5194745867537	4.27726477478174	4.60653183849117	4.37081041719784	4.4311567728997	-0.346175767461156	0.351372616510283	0.658808615509455
Merged-chr2-76071047-4	chr2	76070950	76071150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081033, intron 12 of 19)	intron (NM_001081033, intron 12 of 19)	-89083.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	6.26733135488873	5.92178398517728	5.83785217841138	6.16518223178342	5.99855622629446	5.74578136720458	6.09075316477197	5.92792556741407	-0.181525799486792	0.472063767650915	0.750307637220027
Merged-chr11-62554551-2	chr11	62554451	62554651	+	754.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	2820.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	3.40967801931503	3.27636227757452	3.18296440080724	2.93970242094424	3.07199911836615	3.41656431188161	3.23125906823219	3.45910422961269	0.353878536102526	0.534556276819895	0.789286995820758
Merged-chr13-92483532-4	chr13	92483429	92483629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163627, intron 1 of 5)	B2_Mm2|SINE|B2	502.0	NM_001163627	73942.0	Mm.85935	NM_001163627	ENSMUSG00000034334	Fam151b	4930405M20Rik	family with sequence similarity 151, member B	protein-coding	6.10642232708413	6.03794473717701	5.7689562948021	5.91282807131143	6.48494519385688	6.46119040808609	6.48702812469082	6.57549874766811	0.821581890351308	0.000235460737281464	0.00415722794017872
Merged-chr19-45805134-4	chr19	45805006	45805206	+	865.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145703, intron 1 of 9)	intron (NM_145703, intron 1 of 9)	7185.0	NM_001276358	80906.0	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	4.08106823676791	4.32323358449618	3.75281843895166	4.14677728068531	4.20012205318549	4.1560043988129	4.11141341753242	4.37980927937241	0.294927544005817	0.487112095425857	0.760577292750831
Merged-chr12-57464882-3	chr12	57464791	57464991	+	994.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81220.0	NM_008259	15375.0	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	4.23639414968659	4.66074747235893	4.96046504478966	4.97219753040269	3.07458156957763	3.38269768246271	3.48174766423747	3.33638194432327	-6.12151732479254	7.65282662192735e-10	5.02046586287711e-08
Merged-chr1-57394173-4	chr1	57394073	57394273	+	961.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037742, intron 3 of 7)	intron (NM_001037742, intron 3 of 7)	-12375.0	NM_001081181	68115.0	Mm.275428	NM_001081181	ENSMUSG00000025971	Maip1	9430016H08Rik|AA409999|C78988	matrix AAA peptidase interacting protein 1	protein-coding	4.50370380128482	4.98955731180725	4.26774385641217	4.53216952044069	4.86283266724981	4.76151278595582	4.3486564696126	4.66389299583853	0.162155046167717	0.680663270440988	0.868945600952707
Merged-chr1-182520203-3	chr1	182520130	182520330	+	934.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2620.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	3.98647814056467	3.69943811080409	3.75550193152085	4.08451434848366	3.49693516060842	3.65080593108196	3.68877543457651	3.47113350411318	-1.00003536892129	0.0397446370132593	0.200988777067036
Merged-chr4-137072809-3	chr4	137072701	137072901	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24106.0	NM_198248	230848.0	Mm.31068	NM_198248	ENSMUSG00000060862	Zbtb40	BC059177|C230087D24|Gm571|mKIAA0478	zinc finger and BTB domain containing 40	protein-coding	3.88207069317358	3.97745601141557	3.83133659478906	4.04122610800427	3.92457357830456	3.78175172424583	3.81605963901263	4.06682430528357	-0.113437076812421	0.795316828366213	0.920823289538254
Merged-chr5-144963572-4	chr5	144963490	144963690	+	930.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038627, intron 1 of 17)	intron (NM_001038627, intron 1 of 17)	2240.0	NM_001038627	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	5.09466741311587	5.23925838600881	4.33321584287746	4.33496666126781	4.87537425163195	5.35370951517318	4.68696790400362	4.78541592289716	0.266898895847065	0.53337290704768	0.788683474267955
Merged-chr11-109414887-1	chr11	109414787	109414987	+	565.0	f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11059.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	2.77497867512065	3.19516826933341	2.84014931736849	2.37366465362851	2.71609673032911	2.88525600909068	2.82963295204498	2.83867906258817	-0.0611316346986011	0.931604119823725	0.975349664377662
Merged-chr9-94537484-4	chr9	94537425	94537625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033145, exon 1 of 3)	exon (NM_001033145, exon 1 of 3)	556.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	5.85126190387678	5.78894560094675	6.57959391909784	5.93885388699736	6.08904927903483	5.92816738639235	6.02554948834348	6.07300811015295	-0.0620409816203992	0.823759591442606	0.932391692257311
Merged-chr3-95654794-6	chr3	95654715	95654915	+	877.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3906.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	4.22095257850826	3.80455062537249	3.90922848268781	3.98912990422074	4.02093333923939	3.61422860714469	3.9892894158098	4.09452954375049	-0.111394070007004	0.806016807845908	0.925322678935546
Merged-chr5-92375549-4	chr5	92375434	92375634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-12238.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	5.83634925113802	6.03043450644041	5.76544205037372	5.77455176019731	5.92527780738473	5.81205921576293	5.73625582948738	5.63171948828352	-0.105600568558298	0.678166765657213	0.868016354520324
Merged-chr11-53795385-2	chr11	53795271	53795471	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	24898.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	6.61813132408806	6.67920317747202	6.16724846141497	6.41597151192082	6.61564045205333	6.6841997229826	6.70095276022906	6.28685859321353	0.143871660320723	0.53700266164658	0.790881697772437
Merged-chr1-58742614-4	chr1	58742510	58742710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 7 of 8)	intron (NM_001355056, intron 7 of 8)	12058.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	7.08301867365743	6.90640243775411	6.92813864855	6.82114576608376	6.71207233088969	7.15426259891141	6.4372147195625	6.66898459266247	-0.235198324516985	0.298889947520814	0.61116597456432
Merged-chr11-102285540-2	chr11	102285440	102285640	+	981.25	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001302505, exon 1 of 3)	5' UTR (NM_001302505, exon 1 of 3)	601.0	NM_001302505	72053.0	Mm.101274	NM_028076	ENSMUSG00000034757	Tmub2	2010008E23Rik	transmembrane and ubiquitin-like domain containing 2	protein-coding	2.48132719339915	2.49019449779076	2.63007212173842	2.44114827136456	2.68172733865991	2.93784530461743	3.03499716446265	2.9952280115014	2.01274988099933	0.00228194328601912	0.0259012025443399
Merged-chr7-58844267-4	chr7	58844168	58844368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	186066.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	6.44906099514867	6.5362277797676	6.98856366319321	7.19140807797432	5.98173312067673	5.96314386056127	5.77825736776071	5.88437739045585	-1.39730709027171	1.41008860342472e-07	5.86608396862467e-06
Merged-chr13-49271994-4	chr13	49271909	49272109	+	913.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 14 of 17)	intron (NM_015759, intron 14 of 17)	-23303.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	4.6111600353044	3.97280557464222	4.07783342074443	4.3883630108525	4.21834933527604	4.36209107995704	4.62514144438979	4.87002040438791	0.57326980886611	0.183943373191516	0.481128824317413
Merged-chr5-105798499-4	chr5	105798386	105798586	+	967.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122768, intron 2 of 2)	L2c|LINE|L2	-78082.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	5.38168099399253	6.09159970693316	5.3536000302038	4.99542208877083	5.16080520425836	5.40751081405016	5.43801353639252	4.57271928802865	-0.594150366739692	0.137318546536458	0.412152512077526
Merged-chr1-44118872-4	chr1	44118726	44118926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023645)	promoter-TSS (NM_023645)	-53.0	NM_023645	72050.0	Mm.281714	NM_023645	ENSMUSG00000026047	Kdelc1	1810049A15Rik|5730416C13Rik|EP58|Kdel1	KDEL (Lys-Asp-Glu-Leu) containing 1	protein-coding	7.12815244068674	7.10778192370031	7.40560774145786	7.24381627577667	6.82682486334845	6.75687732243471	7.2539028320201	6.85754366314305	-0.397103842375624	0.0560784648239094	0.247864446578555
Merged-chr18-64515723-5	chr18	64515553	64515753	+	941.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142950, intron 1 of 14)	intron (NM_001142950, intron 1 of 14)	904.0	NM_027350	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	2.12123088216791	2.00142743905075	2.19320448667539	2.0200105754083	2.1548262801871	2.36566864171367	2.31681828985866	2.32474864759377	1.36654963835083	0.0728319879265911	0.290336368062839
Merged-chr4-101998734-4	chr4	101998632	101998832	+	847.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11892.0	NM_001085520	381536.0	Mm.297685	NM_001085520	ENSMUSG00000078625	Gm12789	-	predicted gene 12789	protein-coding	3.75378789022112	3.78925240448125	3.64403992379128	3.58665481149571	3.99401296175736	3.81906524834471	3.93256994996094	3.90150957633788	0.669678515950853	0.129274903246012	0.400152346767879
Merged-chr7-19940023-4	chr7	19939905	19940105	+	842.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027308, intron 3 of 4)	RLTR26B_MM|LTR|ERVK	10738.0	NM_027308	70080.0	Mm.98583	NM_027308	ENSMUSG00000040498	Igsf23	2210010C17Rik	immunoglobulin superfamily, member 23	protein-coding	3.9760250092363	3.55101450121497	3.6263751972736	3.8060786122853	3.8139296399146	3.80091882083233	3.95870656404794	3.68063030987281	0.191731626201796	0.67999639602607	0.868593041138696
Merged-chr18-21701990-3	chr18	21701892	21702092	+	942.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49624.0	NM_001081403	225266.0	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	4.07408938855347	4.10003422446356	3.82593658469074	4.02016890646869	2.95107973776477	3.15373696087699	3.10664059717091	3.11435710295515	-4.09539659235852	6.43315575242611e-08	2.87448583365937e-06
Merged-chr9-63721755-4	chr9	63721681	63721881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	36213.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	6.44526679955342	6.92980759972534	6.30169799363265	6.26463031970168	6.4532255901868	6.40006676624542	6.46339799933176	6.23838916497823	-0.171731274257708	0.492498117050423	0.763537277259366
Merged-chr19-12795631-4	chr19	12795542	12795742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361971)	promoter-TSS (NM_001361971)	481.0	NR_024093	664779.0	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	8.2716005849421	8.33451500176332	8.05044351130446	8.07611184748639	8.20990366205533	8.39269725366606	8.43209226145363	8.2036532655939	0.159287834768931	0.33381503851148	0.644557528456154
Merged-chr7-49272586-4	chr7	49272455	49272655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 1 of 37)	B1F|SINE|Alu	26366.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	5.19871792076437	5.08274473724056	5.19959505239263	5.50450586093359	5.41128434206366	5.27322901582134	5.57032233773055	5.73319875233463	0.408597920758584	0.178411976509001	0.474257238523142
Merged-chr19-8992993-4	chr19	8992905	8993105	+	900.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039959, intron 1 of 5)	intron (NM_001039959, intron 1 of 5)	3721.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	4.85259421200309	5.26260265805522	4.32081925630752	4.4679202268691	4.25868459087281	4.8090162720084	4.7255640075213	4.31821287025283	-0.495471662572356	0.253915669400707	0.565219646993774
Merged-chr17-87064195-3	chr17	87064094	87064294	+	819.638855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38633.0	NM_019936	56724.0	Mm.109329	NM_019936	ENSMUSG00000024146	Cript	1200020A08Rik|AA589469	cysteine-rich PDZ-binding protein	protein-coding	4.04710838144796	3.92759128786281	4.13816614467764	3.83375145197448	4.14767191966766	4.07276069965248	3.88313558067023	4.09121722050866	0.207679271862048	0.624100713729275	0.839275735925487
Merged-chr10-57747253-4	chr10	57747129	57747329	+	839.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-37694.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	4.01028062497576	4.20503693273938	4.23984741484212	4.22011650322418	4.13536427151165	4.02790053370469	4.13491093195735	3.90441654642955	-0.30590887217584	0.45698012057481	0.740285122610765
Merged-chr7-100907495-4	chr7	100907392	100907592	+	994.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081116, intron 1 of 20)	intron (NM_001081116, intron 1 of 20)	24669.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	5.54637643391605	5.67491738892194	5.11091500222315	4.80296137131559	5.56046231024764	5.2878759811369	5.11993384528097	4.96084791591877	-0.111579026408659	0.759653085612581	0.905741537670396
Merged-chr8-93917370-4	chr8	93917270	93917470	+	876.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113384, intron 3 of 7)	intron (NM_001113384, intron 3 of 7)	95270.0	NM_011787	23802.0	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	4.63324777596457	4.28253278593936	4.93969371699566	4.73187240906845	4.2796333726176	4.64567227773609	4.10628736705804	4.84250888858824	-0.376699231684567	0.368312963649125	0.672790747218716
Merged-chr4-128962515-4	chr4	128962413	128962613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172875)	promoter-TSS (NM_172875)	-58.0	NM_001301841	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	6.67888547423562	7.08501834233828	6.69546548132892	6.45918141259749	7.01984346937731	7.18170478357654	6.89682234196704	6.45601885987337	0.242699337910233	0.328956717497466	0.640203701939961
Merged-chr2-50837803-1	chr2	50837703	50837903	+	985.0	f0_balb.idr	Intergenic	Intergenic	-71881.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	3.95233311299591	3.36695332728664	3.17992710150487	3.74476709532421	3.53406286817118	3.4272862673678	3.36377135520007	3.49012050268319	-0.462242578455272	0.407827964234401	0.704018302482004
Merged-chr8-66388883-4	chr8	66388778	66388978	+	916.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 5 of 7)	intron (NM_175188, intron 5 of 7)	2577.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	4.03265823374848	3.83158878751893	4.08096052237636	4.47623941010531	4.11158229824612	4.25176930690828	4.06329384572638	3.70166310298105	-0.24775293151895	0.598190013933342	0.825746818830553
Merged-chr12-101082479-1	chr12	101082379	101082579	+	674.0	f0_balb.idr	promoter-TSS (NR_038047)	promoter-TSS (NR_038047)	28.0	NR_038049	319760.0	Mm.440198	NM_176997	ENSMUSG00000097121	D130020L05Rik	9430007L23Rik	RIKEN cDNA D130020L05 gene	ncRNA	4.07286813713003	3.94179228160892	3.46342490219648	3.56360348197297	3.97478690267736	4.10586960996052	4.01033524024846	4.19719398330529	0.819746038640963	0.0802906665391758	0.307157217387628
Merged-chr16-94245590-4	chr16	94245490	94245690	+	859.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	44701.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	3.93928913386961	4.37870943336303	3.93984653298792	3.83015397117204	3.80038512477293	4.30865130020258	4.16279730846038	4.3048014222503	0.303403992586963	0.504126100384715	0.770626277304553
Merged-chr1-106037123-4	chr1	106037033	106037233	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	46727.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	5.28645939290926	4.78534462736941	4.7400576810121	5.1412398612939	5.20426291536198	4.99978461034422	5.23300332241763	5.00532932816199	0.196941893138447	0.550742438076253	0.798673593705145
Merged-chr8-117288124-4	chr8	117288020	117288220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	31101.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	6.36855858856987	6.30991603524723	6.63811017811438	6.67931349231801	5.97572534793153	6.00909050410972	6.30149077280323	6.23545477023088	-0.578348457433083	0.0149831318890119	0.104731841768436
Merged-chr2-28402361-4	chr2	28402284	28402484	+	845.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45557.0	NM_001005420	241289.0	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	4.52888032081351	4.43260125880932	4.60401304635939	4.50982692131306	3.96632667335629	4.08586789045724	4.46971454796071	4.4476753550027	-0.630995745229774	0.115540584673695	0.37614632622068
Merged-chr4-132974153-4	chr4	132974094	132974294	+	932.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010208)	promoter-TSS (NM_010208)	99.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	5.28499066036159	4.69198898373574	4.15373733082706	4.34897989455156	4.47016568216981	4.38994510808521	4.33779110020271	4.48873065348812	-0.58205039826643	0.19086501669404	0.490284569083293
Merged-chr9-37145300-2	chr9	37145189	37145389	+	769.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 1 of 12)	CpG	2033.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	3.35311408594433	3.26004541331432	3.35363037910515	2.81696184866022	3.04277939564464	2.90850548896375	2.86531791019959	3.24725147090417	-0.731255782369376	0.249364476310337	0.560328612484111
Merged-chr19-40832509-3	chr19	40832414	40832614	+	993.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172839, intron 2 of 5)	MIR|SINE|MIR	1235.0	NM_172839	240665.0	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	3.59753535447443	3.53035332157939	4.09179799154883	4.0041901329902	3.86676276489629	3.7749848595142	3.69857068650759	4.0046947810645	0.016868419586891	0.972354032594843	0.990053526064604
Merged-chr9-107547256-4	chr9	107547118	107547318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053253)	promoter-TSS (NM_053253)	-92.0	NM_053253	114602.0	Mm.28331	NM_053253	ENSMUSG00000010044	Zmynd10	Blu	zinc finger, MYND domain containing 10	protein-coding	5.96051239397507	5.88000317539521	5.91885305900397	5.57618557721277	5.75774645479947	5.74796800269852	5.67754522247563	5.82466225467334	-0.11706283735948	0.653686243740927	0.855149414296956
Merged-chr12-98735544-3	chr12	98735441	98735641	+	961.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011877)	promoter-TSS (NM_011877)	-896.0	NM_011877	24000.0	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	3.79997277895484	3.5116136379697	4.06646271421808	4.08692292761026	3.30886927032283	3.51566094667636	3.78425619303375	3.69575069548359	-0.940966524751559	0.0713854757635287	0.286751477331737
Merged-chr10-96416837-4	chr10	96416729	96416929	+	937.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	190622.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	5.04771783116595	5.42402914195038	5.77939076686778	5.55647587887956	4.85989684391181	4.94793409240269	5.31506492889358	5.27854756756098	-0.677258048001839	0.040182416008513	0.202359147380073
Merged-chr4-43259832-3	chr4	43259689	43259889	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081413, intron 37 of 39)	intron (NM_001081413, intron 37 of 39)	-7370.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	5.34528731316266	5.09534309504703	5.13047776071495	5.23709847229771	3.42176103984712	3.62194115465586	3.55678555042812	3.64574115866084	-5.60619041728459	1.13235134260345e-12	1.1940686846692e-10
Merged-chr6-122939793-4	chr6	122939699	122939899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12716.0	NM_001204241	73149.0	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	5.9600048918258	5.28289580937473	6.11914698664588	5.98987216048515	5.61003131594675	5.6587703600276	5.62364891739785	6.07709571739456	-0.197596400929459	0.517167551688778	0.778683190795269
Merged-chr9-21195260-2	chr9	21195160	21195360	+	764.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 6 of 14)	intron (NM_183408, intron 6 of 14)	-1445.0	NM_019798	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	2.94096051107519	2.84559119318746	2.94132122885921	2.88217010210556	3.01397348594676	2.69893160815649	3.04557595172111	3.11030643667013	0.334585993430534	0.579972002373484	0.815517916470182
Merged-chr2-91453436-3	chr2	91453316	91453516	+	824.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4115.0	NM_172668	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	3.85491142581262	3.97757757282351	3.90930407548254	4.43510373022458	3.77508056837695	4.13448736622704	3.84027350940124	4.3484643801034	-0.10972364505252	0.819744299078321	0.931000262698384
Merged-chr4-122922950-4	chr4	122922835	122923035	+	756.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36859.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	3.90111060254047	3.65658430665114	4.16776687137369	3.92408563792743	3.51015428359573	3.80788866680023	3.78362134540743	4.20426001708342	-0.215418926329729	0.660777402597067	0.859043209063883
Merged-chr4-6427584-4	chr4	6427481	6427681	+	956.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 10 of 30)	intron (NM_010945, intron 10 of 30)	26690.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	4.81549604368791	4.70545370399061	4.56564693567674	5.40097019272133	4.77190393079858	5.16517134408297	5.03283002245123	4.65166224529806	-0.0407795999910641	0.91753225400241	0.969637958663496
Merged-chr1-64919519-4	chr1	64919461	64919661	+	866.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 3 of 7)	intron (NM_001039493, intron 3 of 7)	37263.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	4.01462126172858	3.7213270908491	4.23752960142335	4.29785685215172	3.92273553386885	3.98185571644892	4.04532715532125	4.10633805050938	-0.22326594329305	0.616066971108505	0.834812498791735
Merged-chr4-137179015-2	chr4	137178915	137179115	+	846.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13949.0	NR_040443	100503595.0	Mm.421314	NR_040443	ENSMUSG00000085833	Gm13003	-	predicted gene 13003	ncRNA	3.33603912926431	3.26483376937245	3.27969105583601	3.15422860634917	3.33362533360205	3.13359880413245	3.37714488159261	3.49100240242819	0.321569953749065	0.543331750406831	0.794433365424042
Merged-chr12-100170493-4	chr12	100170392	100170592	+	895.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-10839.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	4.8764754159195	4.52333016843384	4.94684139777542	4.87533484752626	4.87013926255321	4.77691197756503	5.13793078577174	4.90922913701745	0.228300214108338	0.497228796214544	0.766982020988234
Merged-chr1-171285531-3	chr1	171285454	171285654	+	868.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013919, exon 3 of 13)	exon (NM_013919, exon 3 of 13)	2407.0	NM_013919	30941.0	Mm.27510	NM_013919	ENSMUSG00000053483	Usp21	ESTM28|Usp16|Usp23|W53272	ubiquitin specific peptidase 21	protein-coding	3.96956990588116	3.45016772373269	3.8821250491667	3.67441240191801	3.71549377854541	3.50315500826656	3.50206208192968	3.9244458759251	-0.233513319468074	0.642656186921493	0.849309266102231
Merged-chr6-83867190-4	chr6	83867086	83867286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-35445.0	NM_146169	232164.0	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	7.00183870162889	7.14882770788222	7.53471509854295	6.82021508554059	6.72179043414984	6.8708423529444	6.76530123616697	7.19437994146962	-0.341038812993717	0.152262512358581	0.436220300550268
Merged-chr19-21948236-2	chr19	21948154	21948354	+	836.599976	f0_c57.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	169914.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	3.03726839798669	2.94523155321043	3.18374613190554	2.57804136401502	4.34005711520461	3.87515949459612	3.58461836260005	3.2499042220744	3.26876043207236	6.54297623293363e-07	2.37721369121565e-05
Merged-chr11-60353107-4	chr11	60353005	60353205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029044)	promoter-TSS (NM_029044)	-200.0	NM_001359810	216810.0	Mm.218875	NM_153080	ENSMUSG00000000538	Tom1l2	2900016I08Rik|A730055F12Rik|AU042072|Srebf1	target of myb1-like 2 (chicken)	protein-coding	9.12787782378762	9.29402241830604	9.15167391370179	8.99030654798182	8.98749373997232	9.32674968882664	9.13035145014308	8.81358308014044	-0.0826456662797261	0.62127844100111	0.837757076551181
Merged-chr11-120713811-4	chr11	120713696	120713896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016665)	promoter-TSS (NM_016665)	12.0	NM_001347611	20892.0	Mm.259716	NM_016665	ENSMUSG00000025144	Cenpx	Stra13	centromere protein X	protein-coding	8.23078780243238	8.28363675239395	8.16119183874404	8.047386428653	8.02741654668321	8.07558055887844	8.33388697121337	7.95885696622466	-0.0946728635540059	0.575090726262115	0.81272502373833
Merged-chr13-52981706-3	chr13	52981615	52981815	+	918.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017373)	promoter-TSS (NM_017373)	-676.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	3.74243006512338	3.9691461083269	3.98760102767082	3.21167811828095	3.91988189824199	3.808678881871	3.67335724266527	3.98504569887472	0.273748041411056	0.601564843086954	0.827133488921953
Merged-chr16-92705864-4	chr16	92705720	92705920	+	885.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-8491.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.62609665791085	4.14770714169531	4.41383744759759	4.57184298801683	3.76126350828429	3.69506163642161	4.09124466915201	4.20106388385169	-1.29949205084051	0.00388507339830263	0.0391749574667866
Merged-chr4-135352655-4	chr4	135352530	135352730	+	941.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016799, intron 1 of 17)	CpG	584.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	3.91298923284134	3.90010496472283	3.91354255972896	3.78646978192816	4.00028461836045	4.23677944467469	4.09247854511352	4.49796526432212	0.904068776239187	0.0329553530929964	0.178179193148985
Merged-chr12-73881670-4	chr12	73881570	73881770	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19654.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	5.89695817148097	6.18091697410432	5.13947791332804	6.11649831440047	5.90758843947845	5.97914201383212	6.05786558530932	5.98227080161484	0.118494235323544	0.699612447472263	0.878871082378148
Merged-chr10-8974164-4	chr10	8974077	8974277	+	839.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-88107.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.05191340437992	3.8492931015672	3.79500524107164	4.08291513070367	4.19348039911557	3.97144693697222	4.20722878529825	4.0500737558671	0.403283209642889	0.34327710466758	0.651976439766621
Merged-chr2-18056632-4	chr2	18056541	18056741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149308, intron 1 of 9)	CpG	913.0	NR_149308	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	7.78203724983873	7.79453319010075	7.42860523333144	7.64958889427048	7.91938640610804	7.97605310846794	7.99582504971782	7.46380205910917	0.241453566660012	0.215982854363846	0.522408712476695
Merged-chr11-89028048-4	chr11	89027950	89028150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	28647.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	5.97620414942259	5.92914569470971	6.22481210480146	6.11554293189797	6.54111072391552	6.34233842666286	5.87693940923671	5.90278701185489	0.217561345327458	0.417487201381289	0.711296288222139
Merged-chr17-50570853-2	chr17	50570753	50570953	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	URR1B|DNA|hAT-Charlie	61306.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	2.45967637248438	2.9675514928545	2.61423924013726	2.44474511291356	3.07154034976985	3.04904662044865	2.80714068411391	2.81606942145736	1.41532141452598	0.0420214957350848	0.207711669786639
Merged-chr6-30454088-2	chr6	30453988	30454188	+	979.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001311087, exon 9 of 9)	3' UTR (NM_001311087, exon 9 of 9)	-6897.0	NR_131049	69337.0	Mm.396168	NR_131049	ENSMUSG00000085470	1700012C14Rik	-	RIKEN cDNA 1700012C14 gene	ncRNA	3.14845672954775	3.14810716917807	2.88148070275516	3.21032427723409	3.44973635080637	3.25915980587431	3.25188788026739	3.26280785062281	0.751803947758501	0.181153418570666	0.47765583183706
Merged-chr1-144312333-4	chr1	144312243	144312443	+	938.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63239.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	5.14316244130757	5.32931758000461	4.88334077231494	4.98301058443653	5.76397042564001	4.9811266679353	5.44203688646849	5.51699020291506	0.679591833498809	0.0372791919739112	0.192589316701337
Merged-chr17-36187761-4	chr17	36187665	36187865	+	932.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008208, intron 3 of 5)	intron (NM_008208, intron 3 of 5)	2386.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	4.36391800013602	4.27958450475597	4.10239605002893	4.19296874004687	4.24069256597546	3.83069644772135	4.45616280261946	3.94594164528561	-0.220655567858615	0.609100467988934	0.83089280248568
Merged-chr17-8164929-4	chr17	8164846	8165046	+	891.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001197046)	promoter-TSS (NM_001197046)	-572.0	NM_001197046	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	4.63931759959692	5.74104309242337	4.80064917297497	4.25681129236941	4.74279209919026	4.97724313079008	4.70016571751189	4.45454573752489	-0.515887008250888	0.268644503051438	0.580260491970544
Merged-chr10-19068505-4	chr10	19068395	19068595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53085.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	5.78583077756274	5.89797509887848	5.70892255834097	5.52637462301936	6.40505105184266	6.10508439982271	6.06673911027005	5.94776730307388	0.682397499102577	0.00816118063581775	0.0680694488489421
Merged-chr19-16780457-4	chr19	16780370	16780570	+	895.962524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173028, intron 1 of 71)	CpG	463.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	4.85951370622608	4.5070833171317	5.08449247849556	4.72004633618244	4.63449054120457	4.58383269106512	4.52334586267067	5.21919006140915	-0.0652957488832181	0.865097533480415	0.949482326732802
Merged-chr18-57878678-5	chr18	57878587	57878787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009194)	promoter-TSS (NM_009194)	9.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	6.22693829861779	6.12095899334431	6.50135688756986	5.93335973669089	5.82063816708615	5.73521855089395	5.8474574343871	5.61050629899627	-0.69446628633487	0.00859194525281701	0.0707094544051639
Merged-chr14-54464168-4	chr14	54464077	54464277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022993)	promoter-TSS (NM_022993)	30.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	5.95958662612737	6.13148298407795	6.24909776536387	5.983677968594	6.1482138230958	6.15993562666079	6.16092315698314	6.24462563720516	0.153683029375754	0.504339475739586	0.770655921364685
Merged-chr19-32179703-4	chr19	32179586	32179786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	31327.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	7.19886260680488	7.55041310229503	6.93937428501675	6.5669918698388	6.69826617313533	6.851509135345	6.40142971322862	6.11198061159709	-0.791419833198317	0.00552590898944197	0.0511414219164595
Merged-chr6-93758291-4	chr6	93758198	93758398	+	984.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029850, intron 8 of 23)	Tigger7|DNA|TcMar-Tigger	154665.0	NR_104594	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	6.6771191319675	6.87062866044928	7.28535291240329	7.62704839575251	5.99116578189104	5.59642859037276	6.36602679370816	5.67920012722623	-1.79037709036069	3.7962401398606e-09	2.19150508446989e-07
Merged-chr9-69398019-5	chr9	69397982	69398182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145618)	promoter-TSS (NM_145618)	84.0	NM_145618	93697.0	Mm.35911	NM_145618	ENSMUSG00000032235	Ice2	B230343B06Rik|Narg2	interactor of little elongation complex ELL subunit 2	protein-coding	4.99278793327737	4.73917019577629	5.06103382540162	5.10794671612288	5.05743446036529	5.06042909288658	4.89901531283397	5.2403303035616	0.152080429543685	0.633571503849599	0.844711516172605
Merged-chr18-23566389-4	chr18	23566314	23566514	+	892.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361215, intron 3 of 19)	intron (NM_001361215, intron 3 of 19)	68932.0	NM_001285810	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	4.79527721494201	4.61338539213882	4.86438600722094	5.25260871376206	4.32635415199447	4.517166115642	4.26782375087702	4.5629066819894	-1.09399226329431	0.00435892843766607	0.0428711671513377
Merged-chr6-52920881-4	chr6	52920793	52920993	+	858.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-11273.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	3.74923271530876	3.61092029090747	4.07497018436425	3.84980308789874	3.74747328617424	3.5704349917256	3.73467568925856	4.03077163063913	-0.142700735328382	0.764066493755601	0.907505974733652
Merged-chr10-98609610-4	chr10	98609519	98609719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-257752.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	5.6903306229867	5.81204787250752	5.25899144549046	5.17622172964304	5.92451464134847	5.84057038481494	5.47986670395211	5.44595598305009	0.32721376401064	0.296558084304512	0.608507761092495
Merged-chr10-5806655-4	chr10	5806553	5806753	+	861.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1188.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	3.95524245819681	4.18587791678637	4.05278774919655	4.12780368677892	3.83133032759571	3.97170894115833	3.9394967651127	4.14033359011787	-0.319631924952338	0.450464711381193	0.735338736614162
Merged-chr4-155653275-3	chr4	155653163	155653363	+	881.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001320235)	promoter-TSS (NM_001320235)	27.0	NM_001320235	26561.0	Mm.29373	NM_011985	ENSMUSG00000029061	Mmp23	CA-MMP	matrix metallopeptidase 23	protein-coding	3.38489568216123	3.49887113378039	3.44173872567455	3.51817404045468	3.24224493008384	3.49887092710714	3.48175826264207	3.43987968330416	-0.184485554155332	0.7158752742271	0.886371813543908
Merged-chr17-28486192-4	chr17	28486076	28486276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010220)	promoter-TSS (NM_010220)	-27.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	8.16705701626797	8.40177737933974	8.0874231619869	8.13688913649794	7.98971437957097	8.15055105285815	8.09308476098492	7.91725371831685	-0.211667721395842	0.200756920993323	0.502930308662197
Merged-chr11-77519221-3	chr11	77519123	77519323	+	679.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026185, exon 2 of 2)	3' UTR (NM_026185, exon 2 of 2)	4106.0	NM_026185	67477.0	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	3.60924004991882	3.63920595214946	3.38973831884928	3.80335909726783	3.45969884746706	3.30729940688272	3.37785558770459	3.60767533049714	-0.613332018629471	0.234605868512824	0.544447848974703
Merged-chr8-70682951-4	chr8	70682859	70683059	+	851.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9728.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	4.18432918875827	3.84673572114204	4.0513080193945	3.86238892765106	4.0847657743283	3.96970304335549	4.28536365479829	3.8998237204485	0.233574667116302	0.587978294472747	0.819445784289058
Merged-chr10-128345483-2	chr10	128345383	128345583	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026444, intron 1 of 10)	intron (NM_026444, intron 1 of 10)	7756.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	2.1360708244053	2.2730490382806	2.13624143157815	2.13814870619978	2.31575867862327	2.4536517997524	2.40424905364198	2.47315469696747	1.46777888853319	0.0455944283561486	0.218808374862614
Merged-chr10-84163928-4	chr10	84163820	84164020	+	969.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63223.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	5.09669810823551	4.91784836633731	4.79589374578703	5.1006902754713	4.56831554828079	4.67929842666955	4.81024327898298	4.8299890187243	-0.559205060943173	0.0945932991409792	0.336535034715638
Merged-chr6-129533428-6	chr6	129533323	129533523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045270)	promoter-TSS (NR_045270)	-139.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	5.21156605455598	5.74731793337675	5.71395482075166	5.46138829869221	5.45771021919722	6.0032237942494	5.82239426661594	5.63457582489301	0.314673361959423	0.283073953900196	0.595258972633226
Merged-chr3-30917338-3	chr3	30917247	30917447	+	887.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165954, intron 11 of 14)	intron (NM_001165954, intron 11 of 14)	52068.0	NM_001165954	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	3.56223940719542	3.76788523233791	3.78392320025427	4.05362396206155	3.64658685745187	3.41205611731374	4.15403334177373	3.78173306413023	-0.106184045688324	0.837832283346522	0.938470778590661
Merged-chr13-113382984-4	chr13	113382885	113383085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	119859.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	5.42729151826245	5.07239693993189	5.31516844288666	5.03574895670546	5.29172152391508	5.15691712662039	5.61930795734314	5.3407183704003	0.286498540509623	0.348625832499531	0.656307354205775
Merged-chr2-173538737-4	chr2	173538609	173538809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16117.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	5.45774855871867	5.34298888036844	6.04052789505626	5.86464042366449	5.88803072510383	5.72473456453485	5.90912661934155	5.67968037371145	0.152428301723366	0.597601376169288	0.825429034783496
Merged-chr14-63119722-4	chr14	63119633	63119833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-2729.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	6.90172074468546	6.78965063183227	7.06498292039264	7.32400356932778	6.78308610743703	6.58293360865193	6.89417149393112	7.09457716766762	-0.273819925823825	0.226672784953113	0.535295516412117
Merged-chr6-121341917-4	chr6	121341820	121342020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1156.0	NM_001347433	14411.0	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	5.88029433191717	5.85054970727377	6.34104069038402	5.81966372964817	6.15629114494397	6.19382667057798	5.98761163252752	6.13756947432097	0.224815581196834	0.374038678092093	0.677410562957932
Merged-chr18-82767237-4	chr18	82767129	82767329	+	805.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-8190.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	4.05743532122843	4.08023071041756	3.75094136314568	3.71201564253664	3.8753461958057	4.18253386354402	3.89721764019553	4.14338725753968	0.341136865452062	0.444024803645417	0.730462472425057
Merged-chr6-148579080-1	chr6	148578980	148579180	+	587.0	f0_balb.idr	Intergenic	Intergenic	35229.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	3.28587852790681	3.5006075927417	3.3451965636167	3.53554545652059	3.33485766079417	3.56992269884107	3.21394403177595	3.28466602464667	-0.258340544792633	0.624939733639578	0.839659374707287
Merged-chr6-122990089-4	chr6	122989970	122990170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005860)	promoter-TSS (NM_001005860)	-297.0	NM_001005860	474145.0	Mm.263483	NM_001005860	ENSMUSG00000059639	Clec4a4	Dcir2	C-type lectin domain family 4, member a4	protein-coding	5.83933670916133	5.54374059084677	5.49096823320851	5.98314940866304	5.43430092994536	5.54776971919755	5.5728339315477	5.42836299761341	-0.428930718368901	0.12836580713143	0.398627886471273
Merged-chr5-32881368-3	chr5	32881265	32881465	+	891.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360014, intron 7 of 40)	RMER6D|LTR|ERVK	17644.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	4.24564326408724	3.4780659210775	4.58122689373543	4.16971210567768	2.79562568815188	3.04637861013034	3.00117716044375	3.00862202064029	-7.02785410636429	3.40447079187305e-10	2.39217005424217e-08
Merged-chr8-3308507-4	chr8	3308405	3308605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44-int|LTR|ERVK	-28888.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	6.37168667142404	6.59483484314558	6.60340138034059	5.94634008144056	6.59459236682355	6.58453209755972	6.28502216267829	6.43851873692954	0.139851254839183	0.582426277142204	0.816543320790947
Merged-chr15-51877409-4	chr15	51877329	51877529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030132)	promoter-TSS (NM_030132)	-12.0	NM_030132	78581.0	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23 small subunit processome component	protein-coding	7.93878784736893	7.9716047896704	7.814509484938	8.08874329218907	7.98881866578792	7.89490264775155	8.03491066443358	7.83229685432402	-0.028979884006424	0.860331238656244	0.947128143348069
Merged-chr5-148486364-4	chr5	148486275	148486475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65298.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	8.1122732403673	8.01978393827355	8.02414811313972	8.35559415732719	7.86304008293769	7.58022863960088	8.03118444508972	7.88615672791305	-0.374639956265704	0.0397030894043571	0.200825920555542
Merged-chr2-167385594-3	chr2	167385528	167385728	+	732.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36082.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	2.99097700285024	3.08929585855464	2.81803451769877	2.65942312267026	2.73491628127098	2.79446960185214	2.6107505489321	2.54321722059816	-1.06036795417747	0.121316189131003	0.385722295356934
Merged-chr18-84720204-4	chr18	84720102	84720302	+	894.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173770)	promoter-TSS (NM_173770)	58.0	NM_173770	240479.0	Mm.472378	NM_173770	ENSMUSG00000047992	Fam69c	B230399E16Rik	family with sequence similarity 69, member C	protein-coding	4.5286695989905	4.4375983455522	4.31601957678268	4.6416684457503	4.22567595146767	4.29551009279135	4.72220536717082	4.40291441744433	-0.173631295396265	0.654861959392471	0.855729092684119
Merged-chr10-111782609-3	chr10	111782428	111782628	+	740.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	91848.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	2.8207986534856	2.72273147523152	2.82116972653656	2.72406801289175	2.68411217308237	2.66868813124569	2.69101363573467	2.56542237761305	-0.57720294708167	0.37092502136553	0.675068605253279
Merged-chr4-6335803-4	chr4	6335699	6335899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-29881.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	7.74243353504583	7.74590634199958	7.71051351196654	8.03962696331631	8.11950273133305	7.96950132131509	7.94356243513292	8.06787853493931	0.260242654424048	0.132124884453112	0.404624813888968
Merged-chr14-72710598-3	chr14	72710493	72710693	+	916.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207636)	promoter-TSS (NM_207636)	-590.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	3.84366667230032	4.11503295957305	3.62102351029215	3.64367552717605	3.66882888836121	3.96628107006757	3.77641602868754	4.23546191750053	0.303389526310198	0.530317630568963	0.786487730519183
Merged-chr13-19854235-1	chr13	19854135	19854335	+	739.0	f0_balb.idr	Intergenic	Intergenic	-29978.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	3.28355399900695	3.19989529779413	3.0599543127174	3.15620477324015	2.84867589172882	3.17014054513848	2.85441006029106	3.11811504963071	-0.728563075721311	0.219644867652675	0.527288432871829
Merged-chr12-32292967-4	chr12	32292865	32293065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR67B|LTR|ERVL	-84316.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	5.82440606500064	5.7149260149893	5.62264156009943	5.39279202450066	5.8535093976309	5.95291879630339	6.24103033729941	5.67243391263212	0.509559395577885	0.0642508416612687	0.269387205464029
Merged-chr13-54223443-4	chr13	54223346	54223546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153432, intron 3 of 3)	intron (NR_153432, intron 3 of 3)	31313.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	6.34190149432031	6.07671634815174	6.47781881283207	6.11802448200803	6.22644355955053	6.15084813997767	6.55084583321902	6.37362122452268	0.12294910296162	0.607005739046187	0.829747728089716
Merged-chr7-19270235-2	chr7	19270135	19270335	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009499, intron 1 of 12)	intron (NM_009499, intron 1 of 12)	1619.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	5.23761780653243	5.56204487254073	4.90997283321142	4.49748714191738	5.77546395395864	5.59343553726529	5.54807168045166	5.41500696470268	0.8727162595499	0.0149950142976545	0.104775587376656
Merged-chr2-163645132-4	chr2	163645042	163645242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012032)	promoter-TSS (NM_012032)	1.0	NM_012032	26943.0	Mm.218473	NM_012032	ENSMUSG00000017707	Serinc3	AA959945|AA960047|AIGP1|DIFF33|TMS-1|Tde1	serine incorporator 3	protein-coding	8.51574916745907	8.65057945329394	8.60281691096199	8.28496675163648	8.77879620037837	8.88668483041113	8.65627707949962	8.59269908673335	0.274360718240903	0.0950011250902383	0.337227462736788
Merged-chr2-167962516-4	chr2	167962420	167962620	+	764.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	30193.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	3.53041371912337	3.75141834825552	4.07864888741931	3.83750224122016	3.78142381987718	3.8764556508574	3.79351829385356	3.80698942495101	-0.00436117988199448	0.992482716350118	0.997232174860037
Merged-chr11-20103856-4	chr11	20103772	20103972	+	913.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146243, intron 1 of 8)	intron (NM_146243, intron 1 of 8)	9079.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	4.07264448923026	3.73270726004601	4.02575648593741	4.38959577035696	4.21230656000742	3.99276276605238	4.05570171033609	3.97414607765375	-0.0690101020889147	0.879279478449181	0.954815310864317
Merged-chr7-81851803-3	chr7	81851714	81851914	+	763.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7187.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	3.35128408843859	3.17931291460789	3.35174207632902	3.13523082765529	3.0818143443858	3.57680967352497	3.39300338372279	3.45791164479089	0.476275963507588	0.381546759595869	0.683756308096235
Merged-chr3-50438223-3	chr3	50438106	50438306	+	958.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011990, intron 2 of 11)	intron (NM_011990, intron 2 of 11)	5407.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	3.77924231796775	3.62556527279127	4.58316263459223	3.76226487386217	3.22689212739767	3.55273849509322	3.60231390545764	3.36280531795244	-1.70925320506612	0.00287619846532058	0.0309532704207823
Merged-chr15-73147117-4	chr15	73146983	73147183	+	952.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	37864.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	3.87109287338144	3.81807455971896	4.02030274465919	3.95108231076433	4.28078674767273	3.76116527631395	3.95583928810774	4.15077007548935	0.388250986435927	0.377370964480909	0.680039694189387
Merged-chr19-9898799-5	chr19	9898683	9898883	+	883.5200199999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016692, intron 1 of 17)	intron (NM_016692, intron 1 of 17)	750.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	4.86521862965981	4.41444130850915	4.76451037413466	4.85016114665271	4.27077295847407	4.2718936440745	4.23366932235768	5.07123345352622	-0.485658013486365	0.254843282986025	0.566310450490533
Merged-chr6-124932143-4	chr6	124932085	124932285	+	843.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145385, intron 2 of 8)	intron (NM_145385, intron 2 of 8)	797.0	NM_001170341	30853.0	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	3.50882840975287	3.5217515623953	3.66409395522894	3.50379367563726	3.57647191583553	3.38078258773622	3.38291656363128	3.70917049307328	-0.0807574710740935	0.870768841045377	0.951430072143722
Merged-chr7-121289195-1	chr7	121289095	121289295	+	592.666687	f0_balb.idr	Intergenic	Intergenic	-103101.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	3.27460948894118	3.2846928039287	3.16375777590294	3.1368160521178	3.07139875933129	3.27487837483848	2.96740925507156	2.97522120722282	-0.545063101882965	0.338563412369601	0.648064797414472
Merged-chr13-98998141-3	chr13	98998042	98998242	+	821.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13577.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	3.6267167000168	3.3464483100235	3.4057874259536	3.55099586890583	3.64028088787521	3.63696809996504	3.45193002508012	3.72278816363411	0.407517685566903	0.405803698891189	0.702456276834042
Merged-chr5-140505511-4	chr5	140505425	140505625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021528)	promoter-TSS (NM_021528)	-84.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	8.25364159440722	8.50202151907001	8.02418138451839	7.86903844733534	8.34021523952325	8.41553247605809	8.18737603442381	7.93380625630753	0.0665827228658365	0.742917637209326	0.898691548174051
Merged-chr2-181090329-4	chr2	181090244	181090444	+	958.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003824, intron 10 of 16)	intron (NM_001003824, intron 10 of 16)	44945.0	NM_001006668	16536.0	Mm.40615	NM_010611	ENSMUSG00000016346	Kcnq2	HNSPC|KQT2|Nmf134	potassium voltage-gated channel, subfamily Q, member 2	protein-coding	4.58557477488057	4.50586454932884	4.78619874896747	4.83442386678053	4.85575493553628	4.31617788309388	5.05640221344924	5.16296071294758	0.400857491233594	0.292468392642476	0.60479380959004
Merged-chr2-168154645-4	chr2	168154524	168154724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040327)	promoter-TSS (NR_040327)	-111.0	NR_040327	77017.0	Mm.407822	NR_040327	ENSMUSG00000087648	E130018N17Rik	-	RIKEN cDNA E130018N17 gene	ncRNA	6.16031036640437	6.29918621105061	6.19844496800806	5.96479376419411	5.7149072549669	5.66173504091273	6.05262232664355	5.50851272891747	-0.641450713230301	0.0148715199008787	0.1041869995103
Merged-chr8-40294006-3	chr8	40293910	40294110	+	978.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7057.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	4.58530123375934	5.02592062650451	4.76704654481877	5.10033400408738	4.06601530502349	4.07597560606632	3.93300425420094	4.22769893221146	-1.94477502721967	2.00664347966449e-06	6.56693683857648e-05
Merged-chr7-141170063-4	chr7	141169965	141170165	+	921.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172100, intron 1 of 9)	RMER5|LTR|ERV1	-1129.0	NM_145135	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	4.90549902697994	4.99540361767163	5.08171825391863	5.39344280957059	4.97749442272627	4.83911706306316	5.18062576282334	5.11057422808443	-0.183033980087469	0.578120928642403	0.814546399965114
Merged-chr6-113120986-4	chr6	113120887	113121087	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_173005, exon 13 of 21)	exon (NM_173005, exon 13 of 21)	16052.0	NM_173005	72895.0	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	4.9421284368448	4.81812987612208	5.01246950322575	5.15979481593761	4.92812434421658	4.5569206306508	5.11554027066645	5.38556781461658	0.0645125638763294	0.854803915821147	0.945298752280211
Merged-chr16-5256039-4	chr16	5255918	5256118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027446)	promoter-TSS (NM_027446)	-62.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	8.94783063638335	9.0443563520145	9.24375143437256	9.0110029482134	9.00029337818383	9.20324458072902	9.35298298948188	9.03362611150738	0.109327834260147	0.488593712980359	0.761377570765248
Merged-chr15-95828940-4	chr15	95828851	95829051	+	953.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	1121.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	5.21149908979614	5.09978213832266	5.21240014342505	4.6802828332939	5.26910289167735	5.09329037872921	4.85751090653614	4.67311891570302	-0.0987165855454771	0.782312821616729	0.91529005173258
Merged-chr1-62697124-3	chr1	62697008	62697208	+	678.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6209.0	NM_001077406	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	3.31204589478896	3.24960863837471	3.12763777267554	3.55524286180545	3.49735802714514	3.48146966358476	3.24235207666978	3.2521202709848	0.147344453572087	0.789754017270635	0.918593426288807
Merged-chr15-6278740-4	chr15	6278650	6278850	+	988.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21039.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	4.6540724062967	4.47518796780282	3.87475717572206	4.28956762614947	4.75116993956044	4.64097824682514	4.1381511101109	3.93365043029371	0.147282350229362	0.756953774293306	0.904554066545557
Merged-chr4-62662649-2	chr4	62662549	62662749	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-11325.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	3.96554399590203	4.17863433085846	4.28946803139168	3.99951961342752	4.09545776343566	3.97847772887574	4.09694378583701	4.3655952664788	0.0874230849420021	0.833860406942333	0.936577740653464
Merged-chr4-140674484-3	chr4	140674381	140674581	+	940.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8576.0	NM_001112722	72754.0	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	3.11517540841356	3.14860102735363	3.31978832055533	2.99838764480703	3.62523288827479	3.87270175093518	3.97653416702087	3.43896261961124	2.06740756898009	9.58893227579229e-05	0.0019601683241201
Merged-chr19-16084490-4	chr19	16084392	16084592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48339.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	7.49609384181453	7.68209081159575	7.75557717673763	7.68555993917967	7.73269997634092	7.68430425288096	7.72557622284684	7.59313359471838	0.034736031194337	0.835742021509039	0.937516254002898
Merged-chr15-81836165-3	chr15	81836063	81836263	+	923.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22163.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	4.65586697631292	4.48882127976054	4.83380714474563	4.50543716165716	4.64937845478508	4.33395127737414	4.55703035531072	4.7627014716015	-0.0613625993121029	0.866489939052765	0.949986943850413
Merged-chr15-76879195-4	chr15	76879098	76879298	+	971.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358816)	promoter-TSS (NM_001358816)	-55.0	NM_145916	223669.0	Mm.38948	NM_145916	ENSMUSG00000033669	Zfp7	KRAB20|KRAB7|Krox-2|Zfp-7|Zfp65|Zfp80|Zfp86-rs1|mszf73-2	zinc finger protein 7	protein-coding	5.9883162876731	5.77140424356964	5.64821097763083	5.76573127462353	5.23287810910133	5.35828159263458	5.08122383242241	4.98533108394787	-1.09317101765902	0.000141593547662208	0.00271834746062615
Merged-chr2-32151452-3	chr2	32151350	32151550	+	955.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172661, intron 1 of 29)	CpG	302.0	NM_001159634	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	3.24608610338995	3.69648111298074	3.37200346824099	3.7675334971252	3.5284152823171	3.48473799799262	3.47322942644257	3.42880830388064	-0.238318003585529	0.653468975108229	0.855028016671249
Merged-chr9-74871494-4	chr9	74871384	74871584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008262, intron 1 of 1)	intron (NM_008262, intron 1 of 1)	9563.0	NM_008262	15379.0	Mm.303355	NM_008262	ENSMUSG00000043013	Onecut1	D9Ertd423e|HNF-6|Hfh12|Hnf6|Hnf6b|OC-1|Oc1	one cut domain, family member 1	protein-coding	5.62954144667166	5.16008143727779	5.43899895921091	5.62492069048902	5.44237760856616	5.52452461087836	6.00719713303343	5.60091263739833	0.297611152968311	0.320444224590861	0.632315908797763
Merged-chr11-76628817-4	chr11	76628736	76628936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43634.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	6.00009284286878	6.21400699906521	6.41172866281228	6.41249256484214	6.02801256958734	6.03356897911528	6.41163560483213	6.40713822362156	-0.0757155571664853	0.760013475369645	0.905851390428209
Merged-chr19-26607967-3	chr19	26607847	26608047	+	899.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 1 of 32)	intron (NM_011416, intron 1 of 32)	2787.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	3.51755004090708	3.6278860706161	3.82665824818972	3.53036663767194	3.36003156334878	3.63472769649008	3.80952216039048	3.67944706723714	-0.00280941791909029	0.995473229906759	0.998334470328048
Merged-chr7-80753901-1	chr7	80753801	80754001	+	944.0	f1_c57bl6.idr	intron (NM_016721, intron 11 of 37)	intron (NM_016721, intron 11 of 37)	49430.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	5.12615347009922	4.75660096760341	4.65313495662458	4.81261452478752	4.18889238300054	4.15251328821666	4.4689974939683	4.57089954498883	-1.10268795659702	0.0041146824005896	0.0409563667447304
Merged-chr17-46641280-3	chr17	46641188	46641388	+	946.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357130, intron 3 of 15)	intron (NM_001357130, intron 3 of 15)	4792.0	NM_001357130	74764.0	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	4.25722876810044	4.26353387821113	4.60438466667067	3.76826921045215	3.89604851318987	4.38675039017116	4.23850085810124	4.21020790703375	-0.141017219343918	0.759402564589825	0.905638317712331
Merged-chr11-44417616-4	chr11	44417526	44417726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17563.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	5.98630671442217	5.57409062814232	5.69566051385333	5.90875556645609	5.93776347112667	6.30489632128116	6.04022204672721	6.2724203327072	0.524290404056198	0.041657115776069	0.206691644296975
Merged-chr11-6627980-4	chr11	6627853	6628053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-1886.0	NM_134011	21379.0	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	4.99939038586061	5.09198943932645	5.45141529802479	5.45037027583302	5.12567716654589	5.28862188621669	5.71123397095407	5.52636883210694	0.269916891108185	0.400524139624192	0.698297047011029
Merged-chr6-129407486-4	chr6	129407385	129407585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1377.0	NM_001205363	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	7.19054810483888	7.21255954935406	7.73771507222664	7.57875395926082	6.95648985406108	7.16263910989418	7.08671713283775	6.79500603825864	-0.610982390497908	0.0044346813698685	0.0434608543612653
Merged-chr5-21113700-6	chr5	21113627	21113827	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-57816.0	NM_011203	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	3.74411323380013	3.6519190540428	4.14907246444163	3.75465724355259	3.79589245010106	3.6926350250785	3.6762313113014	3.84409803665679	-0.224561113669531	0.632147215366179	0.843729759303872
Merged-chr2-3719627-3	chr2	3719540	3719740	+	885.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	L1_Mus3|LINE|L1	6182.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	4.1935086384306	4.08547424155903	4.23501057811098	3.40647710515135	4.24470329391873	3.87505737868335	3.79485140999767	3.91491787855601	-0.107913830944481	0.833149857536643	0.936237948428556
Merged-chr14-25493722-4	chr14	25493640	25493840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	34555.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	6.61440001413703	7.2162664084241	6.72239907317376	7.0802622098925	6.66780984956467	6.36346961173111	6.41232941156997	6.54550794312688	-0.617330117882286	0.00843748064151494	0.0696880290766294
Merged-chr10-71285277-4	chr10	71285183	71285383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145420)	promoter-TSS (NM_145420)	-21.0	NM_145420	216080.0	Mm.270530	NM_145420	ENSMUSG00000019927	Ube2d1	UBCH5	ubiquitin-conjugating enzyme E2D 1	protein-coding	6.69577011241113	6.57272909444618	6.51010213036297	6.85827514093805	6.37369879079719	6.34372843323944	6.64833777964479	6.6177289030256	-0.258729767481213	0.241997754870027	0.552602040162126
Merged-chr5-31096308-1	chr5	31096208	31096408	+	993.0	f1_balb.idr	intron (NM_001347323, intron 1 of 8)	intron (NM_001347323, intron 1 of 8)	-2781.0	NM_011773	22784.0	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	2.28714992521178	2.28937963975281	2.20988640231917	2.01743449820868	2.39158631898787	2.60576852482384	2.54912418676339	2.73071565174639	2.34718298328954	0.00225622327953654	0.0256706708462486
Merged-chr4-33244108-4	chr4	33243972	33244172	+	883.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	4715.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	3.65121857323726	4.13862392878759	4.06032171782369	3.80180676976054	3.98721681785839	3.99323158447728	3.69635470263749	3.86982632717048	-0.0802421047629218	0.86136169556105	0.947603037485356
Merged-chr15-5416223-4	chr15	5416116	5416316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80102.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	7.00679630653536	6.78966826077644	6.61955421902612	6.68675195021104	6.91799910612327	6.73041204465087	6.84776077406978	6.94199272302579	0.124085220316769	0.542870181918285	0.794008953350891
Merged-chr11-30163309-3	chr11	30163228	30163428	+	999.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175836, intron 1 of 34)	intron (NM_175836, intron 1 of 34)	34929.0	NM_009260	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	4.82020826245048	4.18705787138822	4.73494752589442	4.98837607738427	3.18205125515333	3.37642680584373	3.4004740549356	3.33044367569331	-5.60018180895982	1.11656540929896e-09	7.12789320793636e-08
Merged-chr11-95146257-3	chr11	95146138	95146338	+	654.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007867)	promoter-TSS (NM_007867)	-437.0	NM_007867	13394.0	Mm.439766	NM_007867	ENSMUSG00000020871	Dlx4	Dlx-4|Dlx7	distal-less homeobox 4	protein-coding	3.65837683395496	3.52440116742569	3.54881069545326	3.84498882719477	3.60943289371114	3.60530896264838	3.59109636458981	3.93884841019283	0.0912141583269387	0.852037958608303	0.94421936565126
Merged-chr17-36193772-4	chr17	36193662	36193862	+	832.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3611.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	4.10108826005594	3.9294194112153	3.70895420247906	3.76399142563708	3.91398015752535	3.99169637800658	3.90371820724262	3.86838560852636	0.119937650397301	0.785367339296318	0.916479414030825
Merged-chr11-116433950-4	chr11	116433815	116434015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003376)	promoter-TSS (NR_003376)	-179.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	8.98325334005636	9.03411531034688	8.91542110615111	8.76995842882171	8.91922083607023	8.95050315341586	9.05298845762367	8.85237080919516	0.0246477203073164	0.867288672789806	0.950313421774078
Merged-chr7-101936124-4	chr7	101936023	101936223	+	960.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR4_MM-int|LTR|ERV1	-2266.0	NM_001162974	69358.0	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	4.89144012498243	4.95781011109421	4.43622841076908	4.73195749938992	4.83447011680299	5.25550615256923	4.72202308394872	4.77975183638967	0.286463797609286	0.422336888877355	0.714627428645491
Merged-chr8-111033789-4	chr8	111033711	111033911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146217)	promoter-TSS (NM_146217)	-31.0	NM_146217	234734.0	Mm.24174	NM_146217	ENSMUSG00000031960	Aars	AI316495|C76919|sti	alanyl-tRNA synthetase	protein-coding	7.53523124074612	7.75770420721343	7.55530997981557	7.52084301258138	8.02093666784991	8.05928454467918	7.81480321794921	8.05055485980649	0.516445586809063	0.00226711879210351	0.0257740374545817
Merged-chr6-134897505-3	chr6	134897434	134897634	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029441)	promoter-TSS (NR_029441)	291.0	NM_001167695	14760.0	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	4.25435743307982	3.9979062773382	4.57234785043515	4.24127788697	4.31553447033696	4.18573083791489	4.44149829006364	4.15904658773587	0.0151291848822565	0.970378267665251	0.989393572848762
Merged-chr3-76068116-3	chr3	76068017	76068217	+	908.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6444.0	NM_178673	213262.0	Mm.379337	NM_178673	ENSMUSG00000034098	Fstl5	9130207J01Rik	follistatin-like 5	protein-coding	3.80385529784857	3.85497857698877	3.40779468356353	3.956122396268	3.49651213234657	3.76657726021743	3.68797350514797	3.84998518654962	-0.241816014891827	0.626338138396576	0.840442679050822
Merged-chr5-31614799-2	chr5	31614699	31614899	+	864.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025796, intron 2 of 3)	Tigger5b|DNA|TcMar-Tigger	848.0	NM_025796	66845.0	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	3.6889044050074	3.45051568670654	3.78549184443051	3.19582438405892	3.38556155125851	3.52935887295782	3.76832517446674	3.68722137729953	0.190840029417877	0.719250630793828	0.887855791496547
Merged-chr16-33966973-4	chr16	33966890	33967090	+	994.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009471)	promoter-TSS (NM_009471)	48.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	4.75495316844009	4.86224653192032	4.86749190646194	4.75156011740909	5.08040926257855	4.92962337732853	4.77152863183939	4.75262001580744	0.191251125127912	0.559651595435077	0.803980525375318
Merged-chr14-70402600-4	chr14	70402486	70402686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021308, intron 10 of 22)	B3A|SINE|B2	26508.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	6.61669727391105	6.47317878576169	6.39489325070961	6.60520138730397	6.91875993318644	6.60936124149761	6.97116506913214	6.68933529869931	0.402016431614568	0.0576082840961389	0.251935368252585
Merged-chr15-80233966-4	chr15	80233861	80234061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178719)	promoter-TSS (NM_178719)	-119.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	8.57958334817792	8.70462410398793	8.40815308739838	8.35591687622257	8.62320061205165	8.58061260827891	8.58225198111487	8.29783751920997	0.0158581878429839	0.924586116389176	0.972099190228437
Merged-chr1-55406777-4	chr1	55406672	55406872	+	784.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	826.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	3.75952369435174	4.10908315275559	4.44430186957548	3.92984136454972	4.08646214821909	4.25039129731502	4.01338764631822	3.92665001158577	-0.0117135876685519	0.979155542884502	0.992606608380485
Merged-chr4-149076159-4	chr4	149076112	149076312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019781, intron 1 of 8)	intron (NM_019781, intron 1 of 8)	23600.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	4.1168896707265	4.32168432459783	4.39715093964913	4.3851929679213	4.34372923717681	4.4382393971936	4.33506218777136	4.55147896139201	0.235263914081878	0.534173261590787	0.789066961676578
Merged-chr15-77757106-4	chr15	77756992	77757192	+	846.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357895)	promoter-TSS (NM_001357895)	-82.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	4.13840483835314	4.0423908204246	4.41696661369943	3.49305793842408	3.98440514053594	4.12351736303726	3.93124790034701	3.99598198012242	-0.120513769637021	0.805216254048681	0.925171083261684
Merged-chr10-24634449-4	chr10	24634346	24634546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39004.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	8.53332648136714	8.69161101076773	8.5393861858636	8.66446889077237	8.44301893216199	8.22295351656084	7.95729014781867	8.20898323732706	-0.488505034704498	0.0037937909730415	0.038428667663316
Merged-chr8-70821734-4	chr8	70821689	70821889	+	873.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008353)	TTS (NM_008353)	13340.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	3.85981486081829	3.93110311679048	3.86035666723741	3.85434462263837	3.73077704218775	4.08576267171401	4.3555933499187	4.00816809154851	0.493073392022019	0.268925313578218	0.580490538993026
Merged-chr6-83831864-4	chr6	83831760	83831960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146169)	promoter-TSS (NM_146169)	-119.0	NM_146169	232164.0	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	9.04337254793881	9.21671553369129	9.03079029590045	9.0244324701888	9.13051548903393	9.4067570936012	9.0116857038573	9.19856824938322	0.13886264975941	0.365547935078799	0.670295715323899
Merged-chr17-62544408-4	chr17	62544317	62544517	+	875.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	336900.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	4.08725317751115	4.22261766700203	4.18810957072165	4.29124078025094	4.61834096774994	4.36225953402467	4.50410195529756	4.2329371374664	0.565115274260753	0.145259315181411	0.424703750063573
Merged-chr9-103184030-3	chr9	103183931	103184131	+	852.64447	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173781, exon 8 of 8)	3' UTR (NM_173781, exon 8 of 8)	18034.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	3.89024179811337	3.98618031163334	3.89079879125348	4.00839596785072	3.93236180273743	3.59450674813842	3.77039245314779	4.34977639653238	-0.00886655803588984	0.984980456155627	0.994516675368757
Merged-chr9-47587965-2	chr9	47587882	47588082	+	725.833374	f0_balb.idr|f1_balb.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	57630.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	4.05939221827815	3.73364660574295	3.62711257011099	3.69292929568684	3.27151265611951	3.31819541559137	3.26283518328408	3.40025941771139	-1.62866122564808	0.00232362788413212	0.0262446063415805
Merged-chr10-83637525-4	chr10	83637418	83637618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145220, intron 2 of 20)	intron (NM_145220, intron 2 of 20)	11146.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	7.45128818940021	7.08408329689351	7.42518011490712	7.5889248615139	7.07169042512708	6.96446514860404	7.17742558917302	6.94123144259178	-0.495942217539829	0.013767906173826	0.0988088116098772
Merged-chr13-101736218-4	chr13	101736128	101736328	+	779.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	31989.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	3.61388939436562	3.21794749504159	3.71465027008903	3.12494789640747	3.77658803663028	3.83566916231884	3.54658683094191	3.38563507099179	0.70248867726908	0.199644305698008	0.501516923779019
Merged-chr10-3973118-4	chr10	3973016	3973216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172308)	promoter-TSS (NM_172308)	41.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	6.82595113375688	7.28839322917328	6.94773883340486	7.03183273524199	6.53799457984908	6.83978209949692	7.04521318453549	6.71985362340607	-0.344919885389235	0.117215259950155	0.378682551510059
Merged-chr19-34519415-4	chr19	34519313	34519513	+	926.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	8061.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	4.63012668542449	3.9643576696366	4.48233065613378	4.59926857322777	4.41027495449333	4.07811306917539	4.46142650855194	4.31122665998793	-0.284977821787369	0.497916616009254	0.767341607182166
Merged-chr18-69666395-4	chr18	69666276	69666476	+	848.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-259183.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	4.13295558644307	3.83226443827761	3.92265130694066	4.56908692504473	4.3122330633438	4.52647577487665	4.48899465705809	4.0299756016183	0.443543536137965	0.344050718424313	0.652609889053276
Merged-chr18-4948166-4	chr18	4948044	4948244	+	831.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98445.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	4.04221022655193	3.69572356052315	4.13704295210668	4.09382897874802	3.97323446579632	4.06443987121258	4.24670806123471	4.41761167969742	0.454655436944599	0.297693416751339	0.609928318440563
Merged-chr4-83235643-3	chr4	83235567	83235767	+	747.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 17 of 19)	intron (NM_027238, intron 17 of 19)	88522.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	2.94688305031206	2.8060843115601	3.60868393534613	3.18578068076365	3.35167029769944	3.19511784987482	3.13537569823579	3.3710480554024	0.350234387827855	0.580149976356682	0.815645397153596
Merged-chr13-34794010-4	chr13	34793931	34794131	+	990.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	54389.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	5.43117554669053	5.02395490194332	4.84766744719365	5.13957212257719	5.39421502266257	5.06654910702099	5.26850500487535	5.26189008027287	0.246160548450637	0.431912942935124	0.722025678507696
Merged-chr15-66568027-4	chr15	66567930	66568130	+	759.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6984.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	4.17764488719493	4.07543313353834	4.04323973202188	3.91529702668996	3.6946021317887	3.5755080551692	4.42422188737499	4.17561729118037	-0.103959001018877	0.832178293922508	0.935745387641746
Merged-chr19-56655406-2	chr19	56655306	56655506	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66966.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	2.99241223279967	3.04400840958782	3.0521231049949	2.90027604089646	3.06211818332269	3.03816169298469	2.98221723543119	2.92923314570178	0.0573785078451596	0.92053678807998	0.970515472884726
Merged-chr11-94317734-3	chr11	94317661	94317861	+	615.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361574, intron 1 of 9)	B3|SINE|B2	4202.0	NR_155069	67684.0	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	3.51278531541393	3.40973054442039	3.36037616367047	3.0603726381371	2.91924335842375	3.16865874526908	3.29193429245005	3.30320141258165	-0.618372611826595	0.289532140305569	0.601553116401824
Merged-chr17-71093301-4	chr17	71093187	71093387	+	902.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 21 of 36)	intron (NM_001083934, intron 21 of 36)	73730.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	3.69350087565251	4.3012225249423	4.60495859199247	4.1100193691416	4.23019899356604	4.26369722073442	3.91826304857224	4.13500390470947	-0.174011558458368	0.708131665039622	0.882710273980338
Merged-chr15-50109034-3	chr15	50108872	50109072	+	979.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	780077.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	3.22072566829761	3.05373676477813	3.37167624051183	2.96815193236841	4.30228621014087	4.1296800240916	4.43072060813048	4.24406370612211	3.67451533833705	1.32237282277105e-12	1.38216116229106e-10
Merged-chr10-41451018-2	chr10	41450918	41451118	+	924.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_102360, intron 1 of 6)	intron (NR_102360, intron 1 of 6)	660.0	NR_102360	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	2.83302645111225	3.03503825385077	3.2577496977501	2.91771366733156	2.93475135043546	3.14274602937749	3.1374398921235	3.14820787955315	0.30531134292373	0.60317973502207	0.8279893228769
Merged-chr10-68916330-3	chr10	68916227	68916427	+	882.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	192581.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	3.45511467306921	3.68666468467929	3.01799026513353	3.45844747417539	3.33419784671482	3.33511972282456	3.27378059808549	3.50561671659007	-0.224681846023824	0.689020804188077	0.873078401014891
Merged-chr19-45783661-4	chr19	45783571	45783771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151594)	promoter-TSS (NR_151594)	-118.0	NM_023799	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	8.24622717672543	8.59069381112822	8.19962832002155	8.19833584156792	8.38388922036657	8.66552681520515	8.45884198561752	8.40249108373622	0.204793561898207	0.235047962136279	0.54500224434485
Merged-chr19-6665499-4	chr19	6665405	6665605	+	830.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-122435.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	4.14844410326615	3.5274871150734	4.26706673764798	4.20926054762207	3.75522687775149	3.83063677260555	3.51255743663508	3.9697755787978	-0.823855497195137	0.10311585914783	0.352733743669907
Merged-chr15-6411553-4	chr15	6411453	6411653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	24805.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	7.63854889708619	7.6970588260799	7.42520788462546	7.55048415928934	7.49366121272807	7.50097807335429	7.22223573147569	7.17288997913736	-0.295427107026166	0.112512852777111	0.37090368413403
Merged-chr12-69502545-3	chr12	69502437	69502637	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26987.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	6.11248318064406	6.45292697515058	6.11356228667509	6.18653491019124	6.60226730681768	6.51364444910658	6.81464728298421	6.64398946776335	0.62136043659506	0.00508510669778594	0.0480906644421627
Merged-chr11-73093099-4	chr11	73092989	73093189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 1 of 30)	intron (NM_001361245, intron 1 of 30)	2494.0	NM_172944	16407.0	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	7.67017155900811	7.54599342487146	7.39010304595671	7.55760245261072	7.05810507117738	7.45397207635647	7.4296319048309	6.82244766946234	-0.446434479931748	0.0335084794098888	0.180184336021491
Merged-chr6-50255041-4	chr6	50254939	50255139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018769, intron 1 of 9)	intron (NM_018769, intron 1 of 9)	6730.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	6.36323618389646	6.19116677945656	6.82231317475682	6.56795044698795	6.25398714253376	6.19601620599422	6.22043878354309	6.18811470468789	-0.43521150438722	0.0695662614021949	0.282145693467056
Merged-chr19-47406700-4	chr19	47406581	47406781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 2 of 14)	ID_B1|SINE|B4	57730.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	5.45915269693601	5.41872664555461	5.77747378532001	5.67420046788892	5.05000980813238	5.66143011235858	5.40469877251504	4.82463077387521	-0.576698197252933	0.0770731031593924	0.300156273983894
Merged-chr5-115484431-4	chr5	115484316	115484516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167691)	promoter-TSS (NM_001167691)	68.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	6.81153687507414	6.8720245058933	6.12041025915733	6.57501704793168	6.79018076165713	6.91880147281461	6.67899354550677	6.99757211055928	0.315727776091783	0.185391499549903	0.483316175748545
Merged-chr13-24104208-4	chr13	24104125	24104325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026825, intron 17 of 37)	intron (NM_026825, intron 17 of 37)	-113011.0	NM_145399	214189.0	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	7.41612451896054	7.54401234735771	7.54537639924197	7.25650619125476	7.34945017940291	7.27919978749305	7.47304739072345	7.00675139512911	-0.198502604447494	0.309412004081773	0.621662432848957
Merged-chr6-92287116-4	chr6	92287008	92287208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42458.0	NM_009426	22044.0	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	4.66763232081755	5.40904935716824	5.46009805648266	5.31654269250782	5.97527799714227	5.85485604912846	6.23715778942359	5.92493299775995	1.25046178512129	4.97163341525412e-05	0.00112559168449039
Merged-chr7-101348535-2	chr7	101348435	101348635	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	466.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	2.98301733361494	3.03516294153577	3.04304598407017	2.79696175900429	3.08352873163651	2.89238757495854	2.97279488788365	3.09833937829708	0.247276817808722	0.674162605537005	0.866036566253109
Merged-chr6-108742255-4	chr6	108742116	108742316	+	686.483337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-40843.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	3.95591637352257	4.01215773374605	4.34902435770438	4.17424249337538	3.67305203264574	4.13082562096374	3.66021019914881	4.26891322731092	-0.471472611069786	0.316905477414317	0.628905690750891
Merged-chr10-42637018-4	chr10	42636929	42637129	+	780.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41887.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	3.53245501425216	3.25706610117056	3.32060971020693	3.38522873306223	3.3712920572931	3.10347192392396	3.51782327886712	3.31889109856956	-0.13354480198971	0.802865190522312	0.923936032101707
Merged-chr14-32783245-4	chr14	32783145	32783345	+	885.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2718.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	3.90582978006448	3.85082968799065	4.1464653236796	4.36170811996628	3.86063704537395	4.22666770319956	4.21150463889202	3.67487903673252	-0.22247705930117	0.637666108147299	0.846862376144052
Merged-chr6-123227732-4	chr6	123227625	123227825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2118.0	NM_001190320	56620.0	Mm.271782	NM_020001	ENSMUSG00000023349	Clec4n	Clec6a|Clecsf10|Nkcl	C-type lectin domain family 4, member n	protein-coding	6.39783067625829	6.04865815647144	6.13473179254642	6.05219997192359	6.00950825698177	5.63149799637018	6.02271754713222	5.91717802499055	-0.384967458359355	0.126064472988339	0.394475892330285
Merged-chr1-144307206-4	chr1	144307109	144307309	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58105.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	5.59826767864593	5.57831698431219	5.4629173730758	5.97128358126201	5.60488116693875	5.20337117600887	5.5709853688694	5.33856661254467	-0.406860233222507	0.171080095748034	0.46417018915068
Merged-chr11-102318838-4	chr11	102318722	102318922	+	743.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011551, intron 1 of 20)	CpG-2669	274.0	NM_001302955	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	3.71220251864264	3.47707948700995	3.50863630755781	3.45296316983507	3.72653824001037	3.1616316120528	3.69652496600706	3.50673563360256	0.038598318998011	0.941717375877765	0.97898049638905
Merged-chr16-85801404-3	chr16	85801322	85801522	+	984.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009621, intron 1 of 8)	intron (NM_009621, intron 1 of 8)	1691.0	NM_009621	11504.0	Mm.1421	NM_009621	ENSMUSG00000022893	Adamts1	ADAM-TS1|ADAMTS|ADAMTS-1|C3-C5|METH-1|METH1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1	protein-coding	3.84744743693011	4.01260307691086	4.13851141754115	4.07489626295909	3.12488616858214	3.31469419902143	3.3962423981527	3.27023723340899	-2.70258659602114	2.13483184036453e-06	6.9291014849661e-05
Merged-chr11-117727326-4	chr11	117727221	117727421	+	948.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 5 of 21)	intron (NM_198022, intron 5 of 21)	52327.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	4.38907879434471	4.56442773918576	4.69777344977748	5.03915270537074	5.00055479849994	4.41692666038581	4.75113413150839	5.06505317605983	0.255249666029303	0.517758699888286	0.779045924393276
Merged-chr2-118779697-4	chr2	118779612	118779812	+	911.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170593)	promoter-TSS (NM_170593)	-7.0	NM_170593	214240.0	Mm.221499	NM_170593	ENSMUSG00000040035	Disp2	AI840597|B230210L08Rik|DispB|mKIAA1742	dispatched RND tramsporter family member 2	protein-coding	4.44461783719878	4.52873355929245	4.4028474216567	4.41307503465999	4.32019464840909	4.39369440703397	4.46583207345601	4.56167123282798	-0.0301127671562762	0.934277028967026	0.976332045936076
Merged-chr1-151572868-4	chr1	151572816	151573016	+	817.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	Lx4A|LINE|L1	1543.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	3.55605323068365	3.5232093766997	3.66264438540921	3.45765799839347	3.59313584131108	3.72788276571103	3.64747007415018	3.60865221721033	0.316581801439951	0.501991147126846	0.769457185302407
Merged-chr9-22530890-4	chr9	22530807	22531007	+	924.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360259, intron 5 of 22)	intron (NM_001360259, intron 5 of 22)	55192.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	3.83459521176041	4.523377922211	4.56584399050581	4.8266163943036	4.26136786478863	4.02255687987974	4.38718170620731	4.59943936694854	-0.372919917017638	0.424011290025146	0.715897813789117
Merged-chr17-46856831-4	chr17	46856740	46856940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-25427.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	4.93936024960277	5.40864189523394	4.89969298269633	5.06561174807965	5.6168348404844	5.60454675607811	5.29161701857007	5.4813201755319	0.735713224069024	0.0156958110717937	0.108246500947505
Merged-chr14-17457423-2	chr14	17457323	17457523	+	622.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-203537.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	2.96388280699343	2.70150540035126	2.85295841049121	2.75176489908079	2.78058634884247	2.69982265869323	2.6571614111104	2.59516150290843	-0.622073043879056	0.338860010519362	0.648184761990371
Merged-chr3-106782173-4	chr3	106782085	106782285	+	783.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007651, intron 1 of 7)	Lx6|LINE|L1	7964.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	4.00495694051315	3.67062609577029	3.75738096159791	3.9097216728364	4.10792916989434	3.87645490880203	3.84659054871026	3.90968023387278	0.283670039505862	0.523316218486493	0.782464816143387
Merged-chr7-16295586-4	chr7	16295492	16295692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8797.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	7.37725670891974	7.81006410721847	7.04297255207713	7.40940986399585	7.62732900064385	7.55584844749261	7.42978924095636	7.54391949664618	0.132809419003851	0.526407602995776	0.783709825844725
Merged-chr12-85569570-3	chr12	85569519	85569719	+	861.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29486.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	3.49428693900314	3.46356981556572	3.83390463408697	3.49673780435705	3.35611325339848	3.36428448406969	3.48116913217334	3.59920351410974	-0.413188058801724	0.417544978710346	0.711309069758146
Merged-chr6-57707914-4	chr6	57707815	57708015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133737, intron 1 of 8)	L1_Mur3|LINE|L1	5460.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	6.23317823077258	6.07495194924844	6.37737634199483	6.41170190781189	6.23887034510247	6.09000548058921	6.12465143527769	5.97932178651218	-0.259823919408418	0.268524599576547	0.580146289728247
Merged-chr10-17186399-4	chr10	17186346	17186546	+	770.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90664.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	4.2926715817873	3.87087033978781	4.16817211153853	4.52662877748041	3.75975112597628	3.81797742613616	3.85838533780289	4.20860566587481	-0.867766785287533	0.0619787108617897	0.263340861863257
Merged-chr13-93939687-3	chr13	93939590	93939790	+	734.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009712, intron 7 of 7)	intron (NM_009712, intron 7 of 7)	-118106.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	3.16660920600525	3.682498918761	3.60226261491561	3.78816281334339	3.4375831244207	3.66437284271725	3.63905692306029	3.70186929770401	0.0639856521774532	0.904180166580207	0.964538903811323
Merged-chr5-43113626-4	chr5	43113529	43113729	+	901.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119834.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	4.63415850434339	4.24746394291682	4.55639627202356	4.59658686919922	4.55303870274774	4.51304311480259	4.57485971009002	4.80883947660875	0.210963057572976	0.562598721125847	0.805707247859895
Merged-chr19-42518797-4	chr19	42518719	42518919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177464)	promoter-TSS (NM_177464)	14.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	7.07724229336196	7.27192821861446	7.13650899266021	6.91846488142219	6.89282312750121	6.96310449498666	7.23953059152626	6.96178875509702	-0.112422550329195	0.577117480621977	0.813924639099529
Merged-chr4-128768344-4	chr4	128768254	128768454	+	879.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001009819, exon 5 of 5)	3' UTR (NM_001009819, exon 5 of 5)	9096.0	NM_001009819	215493.0	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	4.30397159727201	4.95210193986204	4.35199698931643	4.99763393378853	4.52584495929449	4.16504017723005	4.28608422801949	4.48175021036305	-0.733465650119015	0.0830341722619144	0.313098589305712
Merged-chr5-140742053-4	chr5	140741974	140742174	+	840.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 3 of 7)	intron (NM_173405, intron 3 of 7)	17947.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	4.19753858437384	4.063063259801	3.95856095843199	3.82985338538294	4.22390555518245	4.23260733228172	4.17931772012557	4.1955519837299	0.529601322960348	0.194203217535792	0.49462163455756
Merged-chr8-122934145-4	chr8	122934049	122934249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	MT2B|LTR|ERVL	85775.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	7.09919564702669	7.24633956557783	6.89763139194505	6.67594619454137	6.35049724933745	6.7849787087002	6.48975658808064	6.69696599442555	-0.576311349946052	0.0138812613438213	0.0994018411661825
Merged-chr3-103378253-4	chr3	103378174	103378374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57D|LTR|ERV1	98981.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	7.02218970825943	7.33854189651291	7.36848676485301	7.16598425639928	7.8232747098516	7.78250420582709	8.17457833678065	7.77624325719202	0.885675438008942	3.30748002799156e-06	0.000102715148740145
Merged-chr19-8898029-4	chr19	8897923	8898123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008060)	promoter-TSS (NM_008060)	-34.0	NM_001293621	14376.0	Mm.3196	NM_008060	ENSMUSG00000071650	Ganab	AU042638|G2an|GluII|mKIAA0088	alpha glucosidase 2 alpha neutral subunit	protein-coding	7.64860209493161	7.69177640773165	7.29199326609635	7.57820914288621	7.85304758055574	7.58706392039136	7.81342160421894	7.61056497774467	0.2128439982173	0.24541904425938	0.556504687841301
Merged-chr5-149636341-4	chr5	149636225	149636425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013559)	promoter-TSS (NM_013559)	-10.0	NM_013559	15505.0	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	8.56253083633615	8.4688224842527	8.39085797991778	8.51773794127267	8.53965552139212	8.41643293434567	8.28104012403092	8.30887561087597	-0.117700207289894	0.444557215249017	0.730974104835172
Merged-chr15-83149175-4	chr15	83149070	83149270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_004432)	promoter-TSS (NR_004432)	208.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	6.50163419256559	6.71145990554986	7.08573541366311	6.13273612866221	6.66289540711365	6.7790539590111	6.58430478124729	6.82972368170753	0.108177229393232	0.679074621142685	0.868308212386227
Merged-chr9-111272515-2	chr9	111272415	111272615	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026810)	promoter-TSS (NM_026810)	670.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	3.91835615071736	3.95663902258708	4.41384045749278	4.09288817817852	4.31837085111603	4.04177549388335	3.90342003203063	4.41088784919034	0.208359157476881	0.634271438547221	0.845095562869841
Merged-chr17-35190183-4	chr17	35190024	35190224	+	823.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1684.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	3.61605871709141	3.33331923855385	3.56771519200426	3.10024753107925	3.20654939399949	3.46642404502296	3.338288703505	3.51476890011992	-0.091210367030414	0.868435062393863	0.950742877146131
Merged-chr8-109868505-4	chr8	109868423	109868623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122594)	promoter-TSS (NM_001122594)	-80.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	7.8920066422471	7.75243457102015	7.92886394234489	7.90314798417308	8.00112412901881	7.90939336140021	7.95871710211392	7.5971718815378	0.0113342955149002	0.947911143829468	0.981348536548879
Merged-chr3-107155805-1	chr3	107155705	107155905	+	859.1666869999999	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-27338.0	NM_001081140	242151.0	Mm.245155	NM_001081140	ENSMUSG00000042861	Kcna10	Gm1962|Kcna8|Kv1.8	potassium voltage-gated channel, shaker-related subfamily, member 10	protein-coding	3.60676910225931	4.139712271137	3.79195300091807	3.52372898239837	2.83707063333138	2.93786070655299	3.05365495623517	3.06178201833146	-3.60081948936543	1.54023337985166e-06	5.18846529789217e-05
Merged-chr15-89404739-3	chr15	89404648	89404848	+	663.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162880, intron 1 of 2)	intron (NM_001162880, intron 1 of 2)	5515.0	NM_001162882	75459.0	Mm.45462	NM_001162880	ENSMUSG00000078938	Syce3	1700007E06Rik|TSEG-2|TSEG2	synaptonemal complex central element protein 3	protein-coding	3.3386407001461	3.26016065941725	3.28448405240165	3.09605778511639	3.09578297782127	3.0797345219874	3.27161848225291	3.38948372688291	-0.101361796397991	0.854191364466047	0.945075498668337
Merged-chr17-81551986-4	chr17	81551861	81552061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	186426.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	5.47742266137295	5.7937756616342	5.47836904024127	6.05833819708115	5.63059270681749	5.43785163473571	5.58641032515134	5.14893751941265	-0.465449396480853	0.129444118279171	0.400360889731452
Merged-chr8-94703599-4	chr8	94703502	94703702	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7360.0	NM_026385	67801.0	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	5.04498244015695	4.81777500050315	4.87445959127785	5.0999601125411	5.18866308309107	4.46937832647424	4.85129155885681	5.07399093277922	-0.0672947858106341	0.849166947158605	0.943016077779251
Merged-chr7-110432469-3	chr7	110432361	110432561	+	702.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 13 of 40)	intron (NM_177324, intron 13 of 40)	182459.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	3.30117141556844	3.61458905179832	3.30155028886146	3.44473416970372	3.82795766424819	3.4764025545663	3.46500046270951	3.4765429036039	0.506651952549301	0.326480805117186	0.637972505574722
Merged-chr5-43082541-3	chr5	43082455	43082655	+	900.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-150908.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	3.74576287053402	3.75884461003257	4.217523595644	4.07496321609902	3.60596162140641	3.97562961972354	4.37334540558147	3.85273347993469	0.0365419468351603	0.941191054767681	0.978800743488235
Merged-chr13-95639009-4	chr13	95638896	95639096	+	988.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 30 of 35)	intron (NM_027711, intron 30 of 35)	-20530.0	NM_010169	14062.0	Mm.24816	NM_010169	ENSMUSG00000048376	F2r	AI482343|Cf2r|Par1|ThrR	coagulation factor II (thrombin) receptor	protein-coding	4.46982053473243	5.01148438506033	4.97562638702766	4.68077539131975	5.29580553751517	5.21669807395284	5.25710940267278	4.97224982590803	0.772354102779551	0.0198679263059969	0.127549407467622
Merged-chr14-31423282-4	chr14	31423180	31423380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	-5603.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	7.27301603976577	6.88621484344457	7.28453114336654	7.3678205124339	7.18869703777119	7.04108280130418	6.97622002314399	6.98098989226718	-0.227305247312795	0.262543865643383	0.574331852376618
Merged-chr9-65569647-4	chr9	65569563	65569763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 2 of 5)	intron (NM_153119, intron 2 of 5)	10424.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	7.24343946744566	7.43274064559369	7.58686769257043	7.55523837682292	7.39844189923524	7.47697306232955	7.47942947763597	7.44634645177067	-0.0247585523652097	0.889466379794838	0.958560174490477
Merged-chr9-114851996-3	chr9	114851897	114852097	+	923.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7845.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	3.54421742223731	3.45803004733042	3.91671315774066	4.09970028692962	3.12751728770301	3.28708094179569	3.35957455578747	3.24119112612766	-1.89939999226498	0.000933232778769439	0.0127253976934923
Merged-chr2-58197058-4	chr2	58196934	58197134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	33060.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	6.68409091200421	6.45247765672111	6.67021600962855	7.10514808419157	6.71466762109761	6.52188529999689	6.7785360231375	6.50421589009407	-0.184773109562598	0.437233921144947	0.725557644444268
Merged-chr2-119208892-4	chr2	119208762	119208962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139139)	promoter-TSS (NM_139139)	-67.0	NM_139139	69408.0	Mm.222241	NM_139139	ENSMUSG00000034278	Dnajc17	1700025B16Rik|C87112|D9Bwg1371e	DnaJ heat shock protein family (Hsp40) member C17	protein-coding	7.642516913473	7.86450892273552	7.71147921641696	7.76372336055806	7.62687049749862	7.88050451326818	8.06590740683173	7.9794570985467	0.185808143128113	0.299161993829683	0.611476325488255
Merged-chr2-57240038-2	chr2	57239938	57240138	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010274, intron 1 of 16)	B2_Mm1t|SINE|B2	1656.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	2.66605881543856	2.20823629783468	2.47314486118551	2.45491435999633	2.37926371037588	2.64719735801285	2.65572416681304	2.66493183162636	0.69028887794722	0.345107445301313	0.653412854420975
Merged-chr16-36934951-4	chr16	36934818	36935018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008225)	promoter-TSS (NM_008225)	-65.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	7.78585281831817	7.95338858435611	7.80241162841449	7.73847110719143	7.52772885098633	7.74729869835587	7.80910404274274	7.51813978592694	-0.219407963479184	0.207478978612991	0.511447929091922
Merged-chr8-83566748-4	chr8	83566655	83566855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025843)	promoter-TSS (NM_025843)	-3.0	NM_025843	66916.0	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	5.90803564177866	6.2235329804143	6.00337142369362	6.1393040065954	6.18376947118306	6.13446540588583	6.43915041954242	6.43601068688581	0.335887552182035	0.154916069555362	0.440366250594295
Merged-chr7-67242654-3	chr7	67242507	67242707	+	916.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291195, intron 8 of 10)	L1_Mus1|LINE|L1	19991.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	3.24306224028434	3.89470758124895	3.30833478838791	2.74381867399127	3.44946369884141	3.54902019400106	3.35715061967532	3.8235069908836	0.580001267122522	0.371164209483045	0.675213976711571
Merged-chr17-12252338-4	chr17	12252234	12252434	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357722, intron 11 of 25)	RLTR44A|LTR|ERVK	66326.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	4.85435742398789	4.67453630613401	4.85516154340793	4.335063268307	5.22336548542878	5.24011760806298	5.37821310600487	5.15680571600562	1.14938168350742	0.00054864827354847	0.0083142932644042
Merged-chr14-121036198-2	chr14	121036098	121036298	+	742.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_134082, intron 1 of 26)	CpG	624.0	NM_134082	223254.0	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	3.24366707530298	3.1891127963131	3.47092278437161	3.09223265667364	3.29692899107878	3.15640731182862	3.40375141164736	3.78821469111097	0.645214149936951	0.247537738566022	0.558710321327717
Merged-chr5-105545204-4	chr5	105545087	105545287	+	966.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	RLTR17|LTR|ERVK	25716.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	4.81233829243209	5.24897554644382	4.72979894890076	4.54496122034497	5.41624782457911	5.24269668711472	5.28244199869505	4.99736764453027	0.761977824372508	0.027264690909208	0.157317885394497
Merged-chr11-3456513-4	chr11	3456402	3456602	+	761.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028317, intron 1 of 3)	B3|SINE|B2	-3546.0	NM_001290473	193670.0	Mm.136973	NM_145355	ENSMUSG00000020448	Rnf185	-	ring finger protein 185	protein-coding	3.57461216279124	3.69506651542361	3.34277226029996	3.33304803710439	3.91112468665655	3.45671976715086	3.66159713999477	3.40311115565912	0.459030995532849	0.378684201422927	0.681198988427369
Merged-chr15-99330232-3	chr15	99330135	99330335	+	727.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310622, intron 5 of 25)	intron (NM_001310622, intron 5 of 25)	26951.0	NM_001348256	54614.0	Mm.358668	NM_018786	ENSMUSG00000023007	Prpf40b	2610317D23Rik|Hypc	pre-mRNA processing factor 40B	protein-coding	3.97280542159277	3.72614712134258	3.4344161272124	3.63699327292179	3.7308331680293	3.79626894201279	4.0795313149304	3.781486415971	0.438013852826397	0.357685955887431	0.663837540417421
Merged-chr3-95675719-4	chr3	95675677	95675877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_144899)	TTS (NM_144899)	12140.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	6.15155581930039	5.87841245689489	6.07404599363135	6.33480068072867	5.90879440879212	5.76461161376521	5.55720240010939	6.1095831603243	-0.438028190645698	0.0995628548238614	0.346135803629366
Merged-chr16-10835076-4	chr16	10834978	10835178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162932)	promoter-TSS (NM_001162932)	19.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	5.12620973058926	5.33203390555854	5.19575022667943	5.39408188593483	5.60251483432307	5.30427707391273	5.6592057632914	5.2887025479894	0.359060558635236	0.219455538569905	0.526993886166704
Merged-chr16-48812188-3	chr16	48812100	48812300	+	894.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4656.0	NM_023881	57263.0	Mm.21123	NM_023881	ENSMUSG00000022650	Retnlb	9030012B21Rik|Fizz2|RELMbeta|Relmb|Xcp3	resistin like beta	protein-coding	4.12033190373787	3.86959256363149	4.12097240571723	4.51213948755739	3.83832900829253	3.89164820272987	3.86554685312373	3.71093650732812	-1.00053264298497	0.0307260625934054	0.169986818695477
Merged-chr2-52605545-3	chr2	52605438	52605638	+	746.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	-46927.0	NM_001285427	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	3.33823855285227	3.39075183165791	3.56973249474448	3.59189491828463	3.58269301041047	3.68602871992708	3.70310105455494	3.45748604095611	0.400116571351301	0.418175662891529	0.711693931642136
Merged-chr3-95707700-4	chr3	95707601	95707801	+	939.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19784.0	NM_001301705	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	4.72882307056532	4.76577505521335	4.29255686975748	4.48077577602036	4.68097370557566	4.7050010457657	4.55094378257465	5.07906238075363	0.405890139486348	0.273347548624039	0.584914777642812
Merged-chr14-57680142-4	chr14	57680029	57680229	+	844.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15173.0	NM_020506	57258.0	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	4.3892743004092	4.52728482651346	4.34485339377492	4.65367664088424	4.53714291660093	4.56276554251171	4.41385167791122	4.51394423503299	0.0176397617143322	0.961632913441426	0.986267404712186
Merged-chr6-49074332-1	chr6	49074232	49074432	+	822.0	f1_c57bl6.idr	intron (NM_029353, intron 1 of 3)	intron (NM_029353, intron 1 of 3)	537.0	NM_029353	75593.0	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	3.65044658011354	3.91352509816932	4.03514802460701	3.61086601269099	4.15973087693023	4.11129020231555	4.06363571347852	4.43638005920823	1.07098291704413	0.0147592340344655	0.103624730650939
Merged-chr5-114461426-2	chr5	114461326	114461526	+	772.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023556)	TTS (NM_023556)	17157.0	NM_023556	17855.0	Mm.28088	NM_023556	ENSMUSG00000041939	Mvk	2310010A05Rik|AI256848|AI414037|MK	mevalonate kinase	protein-coding	3.36216112673767	3.49507935461392	3.29910135312397	3.25253073830319	3.27051282037427	3.95009552028652	3.6739665875979	3.63903393439908	0.9713971464833	0.0650492618954642	0.271339745221358
Merged-chr1-131096488-4	chr1	131096436	131096636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	1307.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	6.12267276638983	6.0602173689706	5.75004295840399	6.12361268729253	5.97374769116724	6.25811372161059	6.44107632616221	6.09899798518104	0.256917784961191	0.305505496039303	0.617912471657808
Merged-chr1-120075645-4	chr1	120075540	120075740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1860.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	8.21464236580353	8.22012591409353	7.89763257568521	8.32218895332063	8.31749340857286	8.14858359013961	8.12350522162113	8.12581247751616	0.00610148702007554	0.971411353783	0.989681367650757
Merged-chr3-95658141-4	chr3	95658039	95658239	+	972.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008562)	promoter-TSS (NM_008562)	-582.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	5.30018598009037	5.50465185800481	4.80563227251601	4.39712409299617	5.37584531399689	5.58622557865063	5.24486571831052	5.29737098227102	0.577250606066573	0.130556835457881	0.402170679947429
Merged-chr19-41345656-4	chr19	41345550	41345750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	39420.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	6.16942168683928	5.91420162909021	6.09092816232171	6.18055739828688	6.07278031612627	5.96872446932775	5.90808356170077	6.25889356545494	-0.0577271311985374	0.810138509101544	0.926776956547369
Merged-chr5-146829697-3	chr5	146829591	146829791	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3199.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	3.93618907904157	3.90844799450363	4.07305292651691	3.6694019035828	5.77549303368458	5.42704731287314	5.62249099123359	5.62859033584821	3.69930895946569	1.24939444013339e-24	7.47316360119787e-22
Merged-chr6-54593256-4	chr6	54593157	54593357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153573)	promoter-TSS (NM_153573)	-129.0	NM_153573	231997.0	Mm.274693	NM_153573	ENSMUSG00000038074	Fkbp14	BC029109|FKBP-14|FKBP22	FK506 binding protein 14	protein-coding	6.47858034375482	6.6340347714217	6.72911407357976	6.75929796018084	6.39381090458494	6.47221954670484	6.74990113871155	6.49221061750613	-0.191874216231779	0.373797529951425	0.677216414469042
Merged-chr4-117202429-7	chr4	117202321	117202521	+	950.738098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19797.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	3.93136311882922	4.31827517853225	4.14226734870172	4.02369631587919	4.57884259663021	4.36319262197115	4.12457703512695	4.44121019249247	0.698186187834212	0.0847559573218384	0.316801149304791
Merged-chr18-49633977-3	chr18	49633878	49634078	+	892.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110689.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	4.49333162426225	3.93781942118953	5.29965031033551	5.34419769067445	4.35714190164251	3.89973254134576	4.47290533597417	4.40180166807295	-1.28485134249479	0.101034470361483	0.348883353507981
Merged-chr17-26231233-4	chr17	26231123	26231323	+	968.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	13019.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	4.83622771630947	4.99322463811889	4.67117355762494	4.9133592766919	5.18252550077999	5.08740159831929	4.95996533343636	5.36599175673304	0.565079857712759	0.0763662642865013	0.298515806779553
Merged-chr19-7020299-4	chr19	7020158	7020358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153795)	promoter-TSS (NM_153795)	-789.0	NM_001362399	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	6.8174114890456	6.93033554895879	6.96591710166083	7.16558037592083	6.78802177962046	6.54132897624348	7.09548819657037	7.08128864223183	-0.125197143025224	0.568998282587145	0.809191633255217
Merged-chr9-75437758-4	chr9	75437665	75437865	+	860.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3759.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	3.90614451569551	3.66079228497979	3.50564566111399	3.64066319976379	4.31467658215953	4.12626665094785	4.1132866696391	3.74720387096611	1.15574318633885	0.0121067600110091	0.0905196502965982
Merged-chr11-17727814-3	chr11	17727708	17727908	+	939.0277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	226067.0	NM_026576	68145.0	Mm.178684	NM_026576	ENSMUSG00000016984	Etaa1	5730466H23Rik|AA672646	Ewing tumor-associated antigen 1	protein-coding	4.35780440752221	3.926722006851	4.39746443079394	4.93910677583825	3.37782204089741	4.17495307582532	3.92580244101494	3.63790643613878	-1.72426383587899	0.00148632329529784	0.0185312674436863
Merged-chr6-52919207-3	chr6	52919114	52919314	+	819.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-9594.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	3.30776779154642	2.89982695511926	3.71301586565516	3.05483803966227	3.57628729795755	3.42383174171976	3.46052055536913	3.24576169970811	0.54420343221536	0.367855869167612	0.672391391879664
Merged-chr12-54985198-4	chr12	54985095	54985295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 2 of 26)	CpG	1141.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	6.08996950194905	6.64126688942647	7.01370547409936	5.96583902054356	6.36408523425579	6.75084689555293	6.2283901170615	6.40550930816978	-0.0605303362018257	0.840823100412862	0.939428850539057
Merged-chr6-65585595-4	chr6	65585493	65585693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4805.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	5.99463801042011	6.1776123006942	6.70795289299597	6.65802897225602	6.38179767420643	6.39170621614741	6.49983670602868	6.03831624538632	-0.133229277147014	0.61759759528713	0.835629844601338
Merged-chr12-108765052-4	chr12	108764975	108765175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28236.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	6.86252276087104	7.02173406010159	6.9805155455018	7.22526381324372	6.79164916908176	6.60866849003462	6.86889933716052	6.74511321470034	-0.395215581459603	0.0519800188836605	0.23737380114822
Merged-chr3-85601987-2	chr3	85601883	85602083	+	675.666626	f0_balb.idr|f0_c57.idr	intron (NM_144896, intron 3 of 12)	intron (NM_144896, intron 3 of 12)	27854.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	3.74252944471151	3.89236551450739	3.74304404935669	3.75834390871828	3.89152780297593	3.75048753617619	3.8744766197815	3.63222805218279	0.0335199967964413	0.940744451395159	0.978654793543509
Merged-chr2-151542524-4	chr2	151542421	151542621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302078)	promoter-TSS (NM_001302078)	38.0	NM_001302078	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	6.85813628334792	6.49829324663463	6.3026170553387	6.91756472576209	6.56536300539507	6.50068627564463	7.02483843482324	6.25753014136935	-0.0847030076347301	0.748458976389277	0.900999421474581
Merged-chr5-104982702-4	chr5	104982605	104982805	+	975.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030239)	promoter-TSS (NM_030239)	12.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	4.58351122056304	4.59907974353357	4.54185210992361	4.51129267135832	4.81482082134707	4.83766098334223	4.75457064053732	4.80952092105493	0.532397691337005	0.109102108346883	0.364697799357483
Merged-chr14-75149473-3	chr14	75149369	75149569	+	736.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	13044.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	3.50358619033606	3.70905099284242	3.56196373134883	3.84993564840834	3.62104058975083	3.84017456697929	3.93263439861104	3.44219690393497	0.137753526068445	0.782585779122816	0.91529005173258
Merged-chr1-89450226-4	chr1	89450133	89450333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4578.0	NM_178119	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	6.48064401779347	6.56614442494708	7.09385253710652	7.25879409985557	6.57941042847097	5.85041746778875	6.03763044503964	5.66032510064553	-1.17650654797629	0.000164393704701407	0.00308743522610593
Merged-chr9-102852399-1	chr9	102852299	102852499	+	742.0	f0_balb.idr	intron (NM_001284258, intron 1 of 13)	Lx9|LINE|L1	17479.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	3.25661820919009	3.31015677077945	3.50536341514852	3.51876257180277	2.58183694913094	2.75086812464756	2.7967936326303	3.1992517032608	-2.55227783538863	0.000699252209791776	0.0101286269924234
Merged-chr16-11433983-4	chr16	11433892	11434092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 11 of 20)	intron (NM_028964, intron 11 of 20)	28344.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	6.94396616059009	6.63069422017495	6.94518247145105	7.1586743222115	6.50466122901429	6.52526103024117	7.16859550325657	6.61248225441505	-0.294381131959996	0.232029119945227	0.541621692185733
Merged-chr17-74808534-4	chr17	74808431	74808631	+	952.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152817, intron 13 of 19)	intron (NM_152817, intron 13 of 19)	90781.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	4.53199916036413	4.47843144010015	4.53269875668388	4.89690006776005	5.73039221641902	5.42002331276074	5.80958116715529	5.6304910951187	1.85658037227962	6.94170305095107e-08	3.0746949686599e-06
Merged-chr6-65596694-4	chr6	65596597	65596797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001495, intron 3 of 7)	intron (NM_001001495, intron 3 of 7)	6299.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	5.46112858262646	5.84536065230191	5.9845258766535	5.47391099030638	5.9404948726423	6.0071952227163	5.57909016162509	5.6831413216273	0.192286142369293	0.499579026651388	0.768387448003553
Merged-chr16-18412202-4	chr16	18412102	18412302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007744, intron 1 of 4)	intron (NM_007744, intron 1 of 4)	1292.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	6.10801184496573	6.01719478972464	6.49184268605483	6.41640875423896	5.81350791220786	5.88189668124661	5.92703972345189	6.29442131757998	-0.454512196497762	0.0814082062855836	0.309538179230852
Merged-chr9-51076594-3	chr9	51076471	51076671	+	899.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033534, intron 1 of 7)	intron (NM_001033534, intron 1 of 7)	523.0	NM_001033534	244864.0	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	3.4325589386462	3.25959849816542	3.32289456368045	3.56924746400825	3.31432680178927	3.37549870407036	3.41927538485562	3.13653327131306	-0.339491039283005	0.525849290368569	0.783367294725902
Merged-chr10-99107058-4	chr10	99106972	99107172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027740)	promoter-TSS (NM_027740)	-10.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	6.27004825566381	5.92151109981817	6.13912684256721	5.93404811376689	6.07964445223748	6.12242552432295	6.12734654800524	6.13473775970163	0.0839778631214266	0.722799191168726	0.88928524667289
Merged-chr4-80310844-4	chr4	80310747	80310947	+	981.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-523366.0	NM_031202	22178.0	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	5.47615094499007	4.77876990408797	5.52917313606267	5.73783951850957	5.32480674246399	5.10041645987685	5.50111079740739	5.17515906421069	-0.268841301650756	0.437579621172238	0.725755822849462
Merged-chr7-121158560-3	chr7	121158465	121158665	+	731.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139310, intron 27 of 28)	intron (NM_139310, intron 27 of 28)	75127.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	3.98244565773869	3.82016030485799	3.98305810214967	3.83853354691671	3.56947997579161	3.79483927397309	3.66170096509482	4.15050702784067	-0.274667269072127	0.559170225598822	0.803643367386073
Merged-chr3-88835140-3	chr3	88835053	88835253	+	865.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242372)	promoter-TSS (NM_001242372)	-78.0	NM_027389	76022.0	Mm.126870	NM_027389	ENSMUSG00000054199	Gon4l	1500041I23Rik|2610100B20Rik|3632445O20Rik|5430404N14Rik|AA387005	gon-4-like (C.elegans)	protein-coding	2.48562406150734	2.42597053786636	2.48584292391845	2.09060785638716	3.1934073100259	3.5707662298951	2.93620028307947	3.65170743833645	7.3068219029863	1.24273359332228e-12	1.30274719350643e-10
Merged-chr6-142698154-4	chr6	142698063	142698263	+	865.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001044720, intron 2 of 39)	intron (NM_001044720, intron 2 of 39)	4111.0	NM_021041	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	4.24409398625864	3.93498655569205	4.83939917161549	4.73812995107914	4.49725585183599	4.37370414482035	4.53540478712533	4.77121923089027	0.121212664959385	0.782147090617149	0.915237231838361
Merged-chr16-38721585-3	chr16	38721513	38721713	+	704.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8578.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	3.28467799594109	2.96597282699165	3.08526281701796	3.18039760627522	2.58091451271421	2.66410480187844	2.70325738060162	2.70974029274621	-2.44531266539011	0.000652855304077744	0.00954593009222468
Merged-chr1-171038563-4	chr1	171038461	171038661	+	955.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19635.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	4.53391490544916	4.99907057197687	4.71886054765976	4.86516348671039	5.53848851314999	5.41429873204358	4.85743139349502	5.18078050083409	0.917573763782874	0.00806560512850518	0.0675970455012211
Merged-chr1-36589225-3	chr1	36589142	36589342	+	722.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 10 of 14)	intron (NM_001126046, intron 10 of 14)	4090.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	3.41610028249889	3.18822512714278	3.80403533933273	3.31383782095104	3.06066009252588	3.41341080820673	3.5101383974812	3.5230021083609	-0.204743893477577	0.718747233587585	0.887667216205288
Merged-chr14-70212807-4	chr14	70212702	70212902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5131.0	NM_011366	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	7.28537403748506	7.2227522999047	6.92157245300993	7.09124710461289	7.12030971095573	7.27644822168862	7.19829061818913	6.94370402153933	0.00351947366194652	0.985605846315593	0.994721627180638
Merged-chr6-115722426-4	chr6	115722327	115722527	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	36572.0	NM_144805	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	4.85058527861727	4.7459320030374	4.89100955899148	4.90901539250559	5.24623457243058	5.54455660929379	5.31946245590631	5.36973619751011	0.962638775424083	0.00144682340455732	0.0181149416205779
Merged-chr14-54764982-1	chr14	54764882	54765082	+	621.0	f0_balb.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	16904.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	2.73058388889186	2.80626212994728	2.61359822332483	2.74903524177333	2.30862453119189	2.36393749059665	2.33568990779406	2.34029181919249	-2.53339795220002	0.00201096825079921	0.0234903682883811
Merged-chr10-52233657-4	chr10	52233522	52233722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347444)	promoter-TSS (NM_001347444)	3.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	5.78501389217884	5.68405551888637	5.81002902325868	5.82862575292183	5.62884341044635	6.03084324803865	5.70758986141554	5.96205658645414	0.084355242820089	0.743486714476991	0.89894073126818
Merged-chr7-110920986-4	chr7	110920887	110921087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194464, intron 10 of 20)	intron (NM_194464, intron 10 of 20)	16002.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	6.48214634124764	6.17377336642902	6.43576567478746	6.78725083313274	5.47036760303051	5.61651913054316	6.19311685345731	6.16212304219219	-0.92519210026256	0.00147378967360315	0.0184040131890173
Merged-chr10-22731420-4	chr10	22731290	22731490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011603)	promoter-TSS (NM_011603)	57.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	7.57824279254636	7.76271112674086	7.65828719688192	7.53567483456571	7.98002130385213	7.78352468184906	7.94035914781924	7.65306425687499	0.285161331745213	0.1020386841339	0.350700700046685
Merged-chr10-45058311-3	chr10	45058205	45058405	+	608.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-8909.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	3.67465096369283	3.34983276556227	3.53075768972408	3.32919384325042	3.55082256454995	3.22348570297042	3.23547452266016	3.42248899133081	-0.336621848438117	0.530892686367707	0.786869282179433
Merged-chr2-130488787-4	chr2	130488675	130488875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	38497.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	7.20838386970003	7.25554287139981	7.25101899047878	7.15393981572212	6.62415257656025	6.53442312395923	6.54727587833011	7.17262564076741	-0.651682160656035	0.00327238397689552	0.0341532286057839
Merged-chr6-48582163-2	chr6	48582061	48582261	+	675.0	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-7284.0	NM_183309	330305.0	Mm.123868	NM_183309	ENSMUSG00000052730	Gm5111	A630038D02|EG330305	predicted gene 5111	protein-coding	3.01572441279708	2.80712352557934	2.9502546442837	3.08442215879036	3.36268137058844	3.24997701876045	3.33863013003355	3.07724793186076	1.12017938398986	0.0540070877125075	0.242646106225154
Merged-chr7-114067955-2	chr7	114067855	114068055	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	49826.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	2.56920297169893	2.7905544321571	2.40943632825335	2.26606807287601	2.69479528490038	2.95734025809234	2.89197640980878	3.26171983567093	2.17238584309457	0.00318230807841427	0.0334189298780539
Merged-chr5-75981092-3	chr5	75980996	75981196	+	988.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2668.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	4.27161423016207	4.14537413803315	4.63530915513426	4.34549393862652	3.35254330661641	3.40739526245746	3.56104996991442	3.43578056636745	-2.98454606734456	6.01838246820888e-08	2.70443463197374e-06
Merged-chr18-34557690-3	chr18	34557610	34557810	+	873.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	15382.0	NM_009290	20890.0	Mm.558	NM_009290	ENSMUSG00000012282	Wnt8a	Stra11|Wnt-8A|Wnt-8D|Wnt8d	wingless-type MMTV integration site family, member 8A	protein-coding	3.11341781179918	3.0165643495959	3.11377077348394	2.39819480882012	4.87811398829767	4.10897661932761	4.54124450182134	4.62536776476648	8.42334511534456	1.75951827135603e-18	4.8169519629558e-16
Merged-chr1-87658222-4	chr1	87658147	87658347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	37935.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	5.60403808207323	5.31821722228818	5.55509923497514	5.83648582683711	4.96526961672267	5.38211773491172	5.17972971112473	5.2347161399498	-0.745675504956595	0.0141555195256766	0.100727354225546
Merged-chr17-67329617-4	chr17	67329509	67329709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	24850.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	7.51760767136808	7.94537616047051	7.64867852825912	7.46972340703637	7.58420986361028	7.48870083240603	7.31682767824192	7.00340812414025	-0.377856807679818	0.0758244841393286	0.297505227402376
Merged-chr17-28750787-4	chr17	28750685	28750885	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-18532.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	5.08828657990802	5.31123089669799	5.20949583448592	5.05219140395757	4.35450332179094	4.73056175026423	5.23886141476431	4.59180301084764	-0.798827986311809	0.0319766279591625	0.17469217910087
Merged-chr16-35363903-4	chr16	35363798	35363998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133704)	promoter-TSS (NM_133704)	20.0	NM_133704	317717.0	Mm.259164	NM_133704	ENSMUSG00000034473	Sec22a	1810005C06Rik|Sec22l2	SEC22 homolog A, vesicle trafficking protein	protein-coding	8.03256315547925	7.92116236751885	7.55333799124649	7.73226004822561	8.10655257103393	8.02430370153668	7.85999848564152	7.63040908978287	0.131203361618684	0.498882729453746	0.767965868634447
Merged-chr17-56443463-4	chr17	56443403	56443603	+	976.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 6 of 27)	intron (NM_001252455, intron 6 of 27)	18718.0	NM_001252456	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	4.97131722171608	4.98776803101343	5.28622060374163	4.54776901212122	4.30864888284661	4.68753605518041	4.65950903528444	4.83178092319089	-0.696370018824013	0.0715696680573312	0.287259355061057
Merged-chr17-68223433-4	chr17	68223385	68223585	+	826.895874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50312.0	NM_177278	320858.0	Mm.137356	NM_177278	ENSMUSG00000041565	L3mbtl4	A730037L19Rik|D930040M24Rik	L3MBTL4 histone methyl-lysine binding protein	protein-coding	3.4732545352404	3.88493274418157	4.1397856587389	3.85012057158204	3.68092198983389	4.18183678988704	3.6461124911474	3.76915853594978	-0.0678871419941715	0.891641040504975	0.959441830142612
Merged-chr2-120540035-4	chr2	120539935	120540135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011743, intron 3 of 21)	intron (NM_011743, intron 3 of 21)	23824.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	7.3294398298151	7.31484020846522	7.17028471432622	7.55915111417848	7.13160194306106	6.94928359708285	7.18991593599211	7.10689760377839	-0.357228376600443	0.0637174598403335	0.268109782098315
Merged-chr11-33162401-4	chr11	33162301	33162501	+	948.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008722, intron 1 of 10)	intron (NM_008722, intron 1 of 10)	805.0	NM_001252261	18148.0	Mm.485384	NM_008722	ENSMUSG00000057113	Npm1	B23|NO38|Npm	nucleophosmin 1	protein-coding	4.86943791093925	5.68854333094617	5.44400461052444	5.35729583818874	4.86644539118069	5.19824273216978	4.80690501046176	4.94489673140435	-0.786715578244325	0.0209576879896451	0.132176791902796
Merged-chr15-99252095-4	chr15	99251994	99252194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016766)	promoter-TSS (NM_016766)	-133.0	NM_016766	51812.0	Mm.383472	NM_016766	ENSMUSG00000037570	Mcrs1	C78274|ICP22BP|MSP58|P78	microspherule protein 1	protein-coding	7.92939129090995	8.12043778718562	7.45924614026139	7.53355613330304	8.05101728581481	8.24748783776582	7.74411141334911	7.91834243718542	0.279842002593734	0.193580313107016	0.493731393226286
Merged-chr4-86632614-4	chr4	86632504	86632704	+	961.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20549.0	NM_173400	230376.0	Mm.74730	NM_173400	ENSMUSG00000038047	Haus6	6230416J20Rik|9830144E06|D4Ertd27e|mKIAA1574	HAUS augmin-like complex, subunit 6	protein-coding	4.80112589454514	4.47242394506688	4.42693216849165	4.77580780224104	5.27647001868619	5.16913752878681	5.69386321878108	5.52793240511315	1.49968195832394	1.20368251152181e-05	0.000325396572303878
Merged-chr11-83039356-4	chr11	83039253	83039453	+	947.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355513, intron 1 of 5)	B2_Mm2|SINE|B2	689.0	NR_073523	237887.0	Mm.341645	NM_181542	ENSMUSG00000072621	Slfn10-ps	Slfn10|mFLJ00257	schlafen 10, pseudogene	protein-coding	5.15308436574795	5.31137077874646	4.70703459734103	4.56395180049654	5.24514979417245	5.47375898696657	5.09677673300419	5.05241649374566	0.506232236408543	0.155394530110164	0.440985819425086
Merged-chr4-144908946-4	chr4	144908805	144909005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	15768.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	5.7473041370648	5.84428621508482	6.05987371775354	6.27780906588237	5.48783876184012	5.58343052613002	5.61467731481665	6.05552419077812	-0.508247109303724	0.0758824925090184	0.297621772884033
Merged-chr11-51925776-4	chr11	51925674	51925874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41857.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	7.03901416705885	6.77877703549242	7.29217858024941	7.32845610521533	6.93984491400635	6.56759527873857	7.2655767692523	6.8528026568407	-0.276018988202409	0.24300963901944	0.553987597504451
Merged-chr11-114927737-4	chr11	114927654	114927854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347651, intron 2 of 3)	intron (NM_001347651, intron 2 of 3)	6632.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	5.99889214230671	6.39517416314387	6.2022187926836	4.74784124482233	6.37579995744183	6.28139930366361	6.22460346403931	5.75526041723532	0.294294081407046	0.591013895868116	0.821411686140442
Merged-chr16-91849083-4	chr16	91848994	91849194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 20 of 28)	intron (NM_001110275, intron 20 of 28)	82536.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	7.78537587109826	8.17647779378868	8.12409151451547	7.91860834519272	7.83277718268056	8.09442334969365	8.20828225023321	8.10008565213478	0.0674375551033221	0.707867091752898	0.88265138609557
Merged-chr2-52455780-4	chr2	52455684	52455884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 9 of 13)	intron (NM_001037099, intron 9 of 13)	-30910.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	5.58289508049955	5.27375737511006	5.7502491153561	5.4392478853856	5.13856755614438	5.34454731499201	5.69851684840955	5.35833518966382	-0.212869675727323	0.481064193110327	0.756340723375945
Merged-chr6-115343267-4	chr6	115343159	115343359	+	904.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17692.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	4.73857623661314	4.65442779948939	4.26558808529696	5.15684908705071	4.49660401263249	4.228289472802	4.52432367386471	4.83970854432908	-0.471850171071421	0.262444388606991	0.57424810151607
Merged-chr17-46889721-6	chr17	46889627	46889827	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178385)	promoter-TSS (NM_178385)	-894.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	5.09003264017775	5.12463623958627	4.91947253914552	4.91871479921166	4.77063418139147	5.12984793624723	4.89601118114827	5.26620892814049	0.017506763602595	0.957155107845744	0.984757116793997
Merged-chr1-88702229-4	chr1	88702107	88702307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177305)	promoter-TSS (NM_177305)	-16.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	7.53712693807222	7.72582793831079	7.46497655850725	7.43243692788543	7.24881886229359	7.53356864253818	7.33025769919692	7.46923619287582	-0.197897073790907	0.280261142434966	0.592308919118337
Merged-chr1-162549213-4	chr1	162549107	162549307	+	886.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144877)	promoter-TSS (NM_144877)	-862.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	4.17007412019584	3.52226811820124	4.33513929116645	4.457676523072	4.11073961352241	4.10559844986025	4.01450904277337	3.81772300207594	-0.402358680232289	0.418831115728525	0.712112541828539
Merged-chr5-96968761-4	chr5	96968659	96968859	+	880.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28930.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	4.5567435497507	4.46496264506243	4.43461402282326	4.59773033683233	4.59451711730772	4.37717179688178	4.45666123681708	4.47406814401118	-0.0838536649733578	0.816205217314421	0.929279106228977
Merged-chr10-126901324-4	chr10	126901216	126901416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026858)	promoter-TSS (NM_026858)	55.0	NM_026858	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	6.70587352319186	6.67094620753756	6.80339497745468	6.60973747522551	6.25387916038404	6.443876495251	6.62938009434368	6.39602959389661	-0.382396287511109	0.0746463526881112	0.294607859051126
Merged-chr2-32608756-4	chr2	32608651	32608851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289549, intron 2 of 6)	intron (NM_001289549, intron 2 of 6)	1766.0	NR_110347	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	7.80354650426642	7.94907940221199	7.44873591694004	7.29602557301151	7.63263074013361	7.62622684728407	7.55929147704354	7.42381982514724	-0.105707584487019	0.613317657636921	0.833250529002088
Merged-chr11-115535672-4	chr11	115535552	115535752	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133354, intron 1 of 3)	CpG	578.0	NM_133354	170930.0	Mm.29923	NM_133354	ENSMUSG00000020738	Sumo2	SUMO-2|Smt3A|Smt3b|Smt3h2	small ubiquitin-like modifier 2	protein-coding	4.6935164546046	5.15543141803414	5.14940491062225	4.29803914972008	5.08829222597601	5.19832999618479	4.58655400221722	4.92119421657809	0.210544885400951	0.59913529411488	0.826204186182419
Merged-chr2-128967879-4	chr2	128967792	128967992	+	968.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178404, intron 1 of 11)	GC_rich|Low_complexity|Low_complexity	490.0	NM_178404	78751.0	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	4.69570399448652	5.15905370744003	5.07861501325341	4.70820010511516	4.84506591174325	4.87210532056669	4.25275088313746	4.88122100956855	-0.370824417408789	0.328727894421981	0.640144325858488
Merged-chr4-130890256-4	chr4	130890168	130890368	+	865.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23066.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	4.82544518825798	4.53853647774027	5.51531304460547	5.53652739166921	4.5219866663375	4.18526761899453	4.72777590804391	4.28802831790248	-1.50839245665773	0.000566778820841414	0.00853634144914748
Merged-chr1-107228030-3	chr1	107227940	107228140	+	718.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	50331.0	NM_201363	381286.0	Mm.337362	NM_201363	ENSMUSG00000073601	Serpinb3c	1110001H02Rik|1110013A16Rik|Scca2|Serpinb4	serine (or cysteine) peptidase inhibitor, clade B, member 3C	protein-coding	2.98660732314933	2.88303332699735	3.09899289048711	3.20887015153629	2.6006718333041	2.97201767318838	2.72146878446228	2.86294486395043	-1.22262141732395	0.0620733147203881	0.263512642004086
Merged-chr1-167340525-5	chr1	167340390	167340590	+	870.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-9501.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	3.74369068437018	3.58771073542507	3.59714897260641	3.18604980471308	3.50322999318329	3.48693435882656	3.09010525779672	3.83110553508319	-0.116629144034117	0.83899088558877	0.938856878340637
Merged-chr8-83144786-4	chr8	83144648	83144848	+	984.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-20604.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	6.80600784982116	6.8211515541295	6.70762330297597	6.56851853166081	5.47372623253233	5.86955910670554	5.33368625434802	5.24174423137655	-1.92530732142763	2.9019054315322e-13	3.4540924199169e-11
Merged-chr1-44034504-3	chr1	44034402	44034602	+	777.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-14496.0	NM_001013799	433294.0	Mm.123621	NM_001013799	ENSMUSG00000047343	Mettl21c	A530098C11Rik	methyltransferase like 21C	protein-coding	3.73295846718604	3.99059215719046	3.8435548032732	4.18649820710203	3.58799375911304	3.91006450789592	4.18888215850958	4.03672164545158	-0.0506506648177225	0.915575694313031	0.968750183516281
Merged-chr5-34487981-2	chr5	34487881	34488081	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25998.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	4.95401209568699	4.66536735055908	4.75633825079319	5.06348947042765	5.13351441504172	5.33196090520615	5.22330379678334	5.55452450357921	0.810165360450431	0.0130126699193389	0.095066081513766
Merged-chr5-114647470-3	chr5	114647365	114647565	+	854.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 1 of 15)	intron (NM_022017, intron 1 of 15)	10956.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	3.0664719540916	3.0719889754986	2.95786648212927	2.6673000230385	2.67859806367349	2.88315324459286	2.55590253482999	2.56123600461246	-1.30917353863299	0.0607150937564946	0.2603240562914
Merged-chr11-35178781-2	chr11	35178620	35178820	+	742.625	f0_c57.idr|f1_c57bl6.idr	intron (NM_011412, intron 3 of 35)	intron (NM_011412, intron 3 of 35)	57264.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	2.57510235386726	2.43381378123065	2.49012417317967	2.2268815749854	3.09052241923562	3.45357383055996	3.05029207619733	3.46434837874309	4.92171580473634	1.39400770505546e-09	8.71916295590002e-08
Merged-chr6-122310524-4	chr6	122310498	122310698	+	934.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010749, intron 1 of 6)	intron (NM_010749, intron 1 of 6)	1878.0	NM_010749	17113.0	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	3.79714683704235	3.76526928667025	3.53933476245534	3.62389489923856	3.60058623954933	3.71162732623247	3.6345083397559	3.53751184104955	-0.19333461343876	0.682236948974994	0.869682098720609
Merged-chr7-102193997-3	chr7	102193911	102194111	+	607.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287167, intron 4 of 19)	B1F2|SINE|Alu	15856.0	NM_001287167	269966.0	Mm.439800	NM_022979	ENSMUSG00000063550	Nup98	4732457F17|AI849286|Nup96	nucleoporin 98	protein-coding	3.79619184116329	3.7925827558446	3.60003271149867	3.50077943851718	3.52635444162207	3.27506658400779	3.41757473549152	3.7480971427006	-0.538111103478529	0.295934466260573	0.607840340861675
Merged-chr1-60865359-4	chr1	60865269	60865469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-43656.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	5.67743322205872	5.9749013842773	5.84992342374095	5.56540032363991	5.87539544689255	5.74592071743418	5.86485860405423	5.75071297796596	0.0814196210362832	0.754241901090835	0.903214796307887
Merged-chr3-142881103-4	chr3	142881004	142881204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178654, intron 1 of 21)	intron (NM_178654, intron 1 of 21)	900.0	NM_178654	109333.0	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding	4.87313813569837	4.58943798746713	4.98266542086986	5.11779732914807	5.19528355663144	5.25493725517117	4.77365116171108	5.20149260517192	0.391710912164451	0.251389545583869	0.562835193291211
Merged-chr14-23825093-4	chr14	23824980	23825180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253364, intron 1 of 27)	intron (NM_001253364, intron 1 of 27)	179125.0	NM_001253375	16531.0	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	6.31484989361688	6.36327030848704	6.54321545195032	7.01003077505864	6.40277619963662	6.2185619465137	6.26443381352918	6.71695513106333	-0.278966462793273	0.292919786425515	0.605428232707524
Merged-chr7-16129687-2	chr7	16129554	16129754	+	652.900024	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_148946)	promoter-TSS (NM_148946)	-172.0	NM_001347561	110891.0	Mm.241147	NM_148946	ENSMUSG00000030376	Slc8a2	Ncx2	solute carrier family 8 (sodium/calcium exchanger), member 2	protein-coding	3.65370692775762	3.60205688830352	3.70390265890426	3.53704038071531	3.63931326445243	3.42050610272456	3.6391621868172	3.49066956683182	-0.203468035964747	0.674000023590856	0.865968369660172
Merged-chr14-55039123-4	chr14	55039029	55039229	+	770.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073535, intron 1 of 1)	intron (NR_073535, intron 1 of 1)	667.0	NR_073535	100151693.0	Mm.378403	NR_073535	ENSMUSG00000072492	Gm10364	EG545052	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	3.92108684085409	3.77213738553973	3.87000498826834	3.91210019687675	4.26192854212177	3.88019203184105	3.90541690241749	4.27039238897997	0.614167138582491	0.157250804035183	0.44374226849113
Merged-chr3-54735031-4	chr3	54734937	54735137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025442)	promoter-TSS (NM_025442)	327.0	NM_027148	69639.0	Mm.29253	NM_027148	ENSMUSG00000027752	Exosc8	2310032N20Rik|CIP3|mKIAA4013	exosome component 8	protein-coding	7.8506072984791	7.70131285272637	7.42228417951666	7.6707736787238	7.65908430061302	7.78072682992488	7.88442020126691	7.83198661163972	0.1538587239126	0.384722521614944	0.686216718439084
Merged-chr2-29670360-4	chr2	29670269	29670469	+	797.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	B3A|SINE|B2	50649.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	3.63081700525798	3.68208183232962	3.32056033208713	3.68518240667049	3.84118879966998	3.56951033980208	3.77170223546255	4.12672214189286	0.738577311434441	0.136886859529445	0.411446719920881
Merged-chr14-54412982-2	chr14	54412882	54413082	+	943.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253679, intron 2 of 10)	intron (NM_001253679, intron 2 of 10)	-3510.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	3.05441885425751	3.38443492152366	3.57203533581168	3.30989253784976	3.30247894179877	3.36319799307238	3.23933890780494	3.47168807973852	0.0152102020575582	0.977622216985175	0.991939645680407
Merged-chr15-5242451-4	chr15	5242345	5242545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008965, exon 2 of 3)	exon (NM_008965, exon 2 of 3)	1742.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	4.7713114248476	4.7317248213939	5.14302393575545	4.63581659999425	4.74765302053995	4.82677611011103	5.08799209494226	5.07968314517072	0.239081314207232	0.48810921506378	0.761126159857708
Merged-chr5-29948320-4	chr5	29948240	29948440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64774.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	7.91777285646324	8.04928626278505	8.36457108095869	7.9407692433631	7.97247994569434	7.94299853235938	7.93050214805351	7.94940694240567	-0.162315722211077	0.351759337130563	0.658995574501668
Merged-chr3-89242650-4	chr3	89242560	89242760	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_121683, intron 3 of 10)	intron (NR_121683, intron 3 of 10)	2353.0	NR_121683	360213.0	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	5.28714006212589	5.22843854434406	5.05553327688629	5.30376689839091	5.33626294403344	5.70626854615432	5.16808126886161	5.22221621769864	0.256542416923811	0.396407996289823	0.69519327480908
Merged-chr18-46378246-1	chr18	46378146	46378346	+	608.0	f0_balb.idr	Intergenic	Intergenic	-66318.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	2.52424044666295	2.46991273915535	2.91420794028431	2.90531962940449	2.67964850840048	2.84019419605491	2.78663913276283	2.91255308345394	0.36909217499152	0.595495515163931	0.823979990107331
Merged-chr3-65801170-3	chr3	65801068	65801268	+	780.366638	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166659, intron 9 of 12)	MTC|LTR|ERVL-MaLR	134940.0	NM_001166659	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	3.63438022267827	3.70856072914925	3.74967557854521	4.04333667392937	3.97186035119089	3.62603262973108	4.22445670984869	4.04101589540171	0.485658954487627	0.313328503956855	0.625190188185603
Merged-chr3-106482669-7	chr3	106482539	106482739	+	856.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033207, exon 2 of 2)	non-coding (NR_033207, exon 2 of 2)	189.0	NM_001278941	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	4.59256032556123	4.58581153171234	4.514831202016	4.36811711540046	4.43367031642587	4.3733031017059	4.49407837744812	4.55171636565644	-0.0988871889242075	0.7855104613719	0.916512566674706
Merged-chr9-108341995-4	chr9	108341880	108342080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2900.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	5.95000565468882	6.22549089813231	5.99807953914179	6.33770073705888	6.38148084510795	6.36614475371372	6.30748201472939	6.28147285986493	0.270444383592145	0.247903780628017	0.559072307971538
Merged-chr6-58596535-4	chr6	58596435	58596635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011920)	promoter-TSS (NM_011920)	-137.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	6.20649129808678	6.20467406640096	6.1075198189576	6.376172740697	6.2061283573582	6.10610810142332	6.23196254386283	5.92468618025009	-0.171676429776724	0.463150678670161	0.744592837493862
Merged-chr2-84370561-4	chr2	84370472	84370672	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018782, intron 6 of 15)	intron (NM_018782, intron 6 of 15)	54694.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	5.77889430570279	5.77314128472497	6.31054906128821	5.63480606283481	5.00818255519606	5.46358345702596	5.35380425736796	5.17495774255299	-1.10120015115986	0.000409913426938405	0.0065670105370355
Merged-chr18-38296726-4	chr18	38296696	38296896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164621)	promoter-TSS (NM_001164621)	-9.0	NM_001361268	56736.0	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding	7.24401309380581	7.18028919460787	7.52498941011271	7.25488819990533	7.25829731063408	7.09100302626635	7.3024168562879	7.13897914244657	-0.134542887166563	0.474152420871378	0.751607118426792
Merged-chr17-34174272-4	chr17	34174184	34174384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13046.0	NM_013585	16912.0	Mm.390983	NM_013585	ENSMUSG00000096727	Psmb9	Lmp-2|Lmp2	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	protein-coding	5.36358517172767	5.71033173360044	5.26232843899499	4.91672479318971	6.33790363594861	6.00296270758365	5.67872386684349	6.12643668374935	1.21316111760716	9.74273462284766e-05	0.00198704328859505
Merged-chr2-26503820-4	chr2	26503737	26503937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008714)	promoter-TSS (NM_008714)	-15.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	6.33937279833354	6.6115901815839	6.2818145177365	6.51776790030232	6.3576047931769	6.94819913339431	6.81698542885687	6.54660600919118	0.32829328008702	0.166560877337144	0.457905708083141
Merged-chr4-129624454-4	chr4	129624334	129624534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025455)	promoter-TSS (NM_025455)	-526.0	NM_025455	66264.0	Mm.383215	NM_025455	ENSMUSG00000028795	Ccdc28b	1110002E08Rik|1810010N17Rik	coiled coil domain containing 28B	protein-coding	7.27051401954869	7.325029830889	6.97544240817166	6.95864328165007	7.37049658399594	7.0127091157897	7.77362491664533	7.14488358262327	0.302037540061267	0.189749575640396	0.48878782008207
Merged-chr8-88282856-4	chr8	88282760	88282960	+	982.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109756)	promoter-TSS (NM_001109756)	-132.0	NM_001109756	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	5.53772845272736	5.1296515491228	5.22841581063005	5.53321436923488	5.05912806515106	4.86654187494774	5.32350284847044	5.67616683990129	-0.199048182708858	0.553559961730281	0.800267334299573
Merged-chr14-62374201-2	chr14	62374099	62374299	+	672.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42131.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	2.87562802420609	2.80204261928124	3.13370376121079	3.04859306372822	3.30755185872981	3.24509596785505	3.17835247085275	3.24386899055283	1.05710461528552	0.0665131321077863	0.274868684991879
Merged-chr3-89449023-3	chr3	89448901	89449101	+	860.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_146131, exon 11 of 11)	3' UTR (NM_146131, exon 11 of 11)	-5540.0	NM_001310640	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	3.24107374622503	3.13077036891245	3.18214939062101	3.2393128559691	3.38092937116677	3.09484698690022	3.57681444169593	3.11854577382322	0.407658012733292	0.462370109281612	0.743904700839156
Merged-chr14-19889795-4	chr14	19889698	19889898	+	875.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038637, intron 4 of 4)	intron (NM_001038637, intron 4 of 4)	50873.0	NR_105025	52512.0	Mm.483998	NR_105025	ENSMUSG00000114350	D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	4.1523439127701	4.07383620888169	4.49066501326152	4.61915405657652	4.1960639410446	4.00854231659058	4.18221697373655	4.33029243939385	-0.446542317500623	0.291008693577549	0.603300163108183
Merged-chr11-69949026-4	chr11	69948918	69949118	+	987.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009204)	promoter-TSS (NM_009204)	-821.0	NM_001359114	20528.0	Mm.10661	NM_009204	ENSMUSG00000018566	Slc2a4	GT2|Glut-4|Glut4|twgy	solute carrier family 2 (facilitated glucose transporter), member 4	protein-coding	5.14660513502134	4.79802734168666	4.74684716400218	4.3708806400054	5.01614882415431	4.8425324356185	4.87125805730446	4.85624370476614	0.258763155411094	0.478814051204445	0.754690163973656
Merged-chr11-31898758-4	chr11	31898666	31898866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290678, intron 2 of 7)	URR1A|DNA|hAT-Charlie	27826.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	6.27088282156767	6.58075702562443	6.45047416516991	6.42390250645494	6.33127038475318	6.21929739878525	6.09886492105952	6.42912580724783	-0.237843613141936	0.289428878449085	0.601426348430182
Merged-chr8-11050020-1	chr8	11049920	11050120	+	747.0	f0_balb.idr	intron (NR_046017, intron 2 of 4)	intron (NR_046017, intron 2 of 4)	-41590.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	2.88849578366533	3.11522831237	2.9483970367993	3.26619792608294	2.65220198659787	2.64542706143756	2.81707572028894	2.61831026944469	-1.90657562830369	0.00588744560707999	0.053520113776034
Merged-chr2-59465910-4	chr2	59465816	59466016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18737.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	5.33130325620347	5.81801919233659	5.54762994925379	5.11794259238173	5.2947100603607	5.64418547296975	4.68107750427117	4.60147759002897	-0.626093428720644	0.115882936460472	0.376640709329679
Merged-chr5-32139042-4	chr5	32138926	32139126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	2554.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	4.73930121617094	5.29625220910308	5.05207049462937	4.90676582087428	5.2003863623747	5.19263561112473	5.21866791874053	5.48380030455109	0.497475188065429	0.116548726937741	0.377683671054017
Merged-chr10-96001122-4	chr10	96001024	96001224	+	927.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001932, intron 9 of 28)	intron (NM_001001932, intron 9 of 28)	60461.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	4.57713771312647	5.03133990073764	4.89247130860999	4.98025992398797	4.74302609307381	4.51868280816483	5.25229113661605	4.61867627572428	-0.144143075413432	0.699131761842534	0.878639399618443
Merged-chr15-64287678-3	chr15	64287568	64287768	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	25005.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	3.93798431147117	3.45073104115717	4.02693324529419	4.3012527307028	3.49406363930848	3.49122527653026	3.77752179520196	3.79113545503617	-0.969164915363391	0.0661381943346231	0.273974106804804
Merged-chr1-152526436-4	chr1	152526336	152526536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 15 of 17)	intron (NM_016846, intron 15 of 17)	98781.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.7028970404984	6.13862202989308	5.48306100618711	5.24357489059616	5.98974612049346	5.85397582279523	5.59705083940896	5.79728853929597	0.236599993392458	0.448079016059504	0.73335976739709
Merged-chr6-124740470-4	chr6	124740377	124740577	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013535, intron 2 of 2)	intron (NM_013535, intron 2 of 2)	602.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	5.36209488477003	5.01286233656074	4.86856595501963	4.78087099806909	5.19031591839028	4.79983600982965	4.98717911387356	4.90256119312978	-0.0470176486356294	0.890905052439899	0.959229919188304
Merged-chr4-41050900-4	chr4	41050799	41050999	+	676.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2763.0	NM_007473	11832.0	Mm.8728	NM_007473	ENSMUSG00000028427	Aqp7	AQP7L|AQPap	aquaporin 7	protein-coding	3.7859477445121	3.68138661861227	3.68486577754492	3.4942150362698	3.88540854164812	3.63168221791728	3.67009250647787	3.78425647013707	0.302437744976524	0.517616316014073	0.778953152798512
Merged-chr6-145289187-4	chr6	145289096	145289296	+	869.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38644.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	3.82236970037753	3.48306136741468	3.96667370646681	4.17051177591619	3.84552053486692	3.52469905267697	4.03557242197847	3.76905113311683	-0.245904121006835	0.62810780679448	0.841427212108636
Merged-chr6-128798903-4	chr6	128798825	128799025	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-10284.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	5.46987707871945	5.32237792163275	5.76067613090543	5.09496069462389	5.8065949280239	5.81229433124528	5.70757778486494	6.0489226713951	0.735990429864713	0.0111020316826328	0.0850168384226054
Merged-chr4-103215322-4	chr4	103215205	103215405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356276)	promoter-TSS (NM_001356276)	-129.0	NM_177732	242585.0	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	5.52995086116758	5.24647489364677	6.05542442859587	5.3066671095185	5.2599170479535	5.41585909814585	5.14607548010303	5.13283059822774	-0.569060946029237	0.0845633558771324	0.316446065331575
Merged-chr10-68248832-4	chr10	68248709	68248909	+	918.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	29917.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	4.43423610987787	4.00777739234344	4.65214168267419	4.44269170975594	4.23679010485342	4.14280239802117	4.00199206997199	4.39193082164087	-0.485339217977837	0.248161874034304	0.55925008807623
Merged-chr6-125333661-4	chr6	125333575	125333775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011324, intron 3 of 11)	intron (NM_011324, intron 3 of 11)	12335.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	7.57049587247424	7.55772639050821	7.44060182208651	7.66614488899032	7.53348269803137	7.51532732690724	7.80462715595825	7.70131329745469	0.0983598752910458	0.576072200958391	0.813384724594675
Merged-chr11-119040261-3	chr11	119040158	119040358	+	891.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013926, intron 2 of 4)	intron (NM_013926, intron 2 of 4)	655.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	4.24768822815381	4.06296606696882	3.79129991858386	3.8219931139308	4.05512927897689	3.79550954078818	3.92971984427243	3.78923228269798	-0.226528630997381	0.618143091894552	0.835863676650469
Merged-chr14-55758656-4	chr14	55758522	55758722	+	842.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009894)	promoter-TSS (NM_009894)	-198.0	NM_009894	12684.0	Mm.466766	NM_009894	ENSMUSG00000022219	Cideb	1110030C18Rik|AI790179|CIDE-B	cell death-inducing DNA fragmentation factor, alpha subunit-like effector B	protein-coding	3.33218819104016	3.26949763792338	3.49325975354034	3.48015036468316	3.46380920814907	3.1901155536181	3.26286047289813	3.44015877657959	-0.181291777442544	0.731377339731363	0.893597464662159
Merged-chr5-64210917-4	chr5	64210778	64210978	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	RSINE1|SINE|B4	-19479.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.51433655475883	4.85393505420153	5.33849835187693	5.50556279867124	4.87992800005958	4.32429162182698	4.93430585112858	4.73233000841654	-0.750179914050287	0.070299013019061	0.284000990276618
Merged-chr13-10253241-4	chr13	10253157	10253357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 1 of 4)	intron (NM_033269, intron 1 of 4)	107546.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	6.34225021814732	6.68242546390501	7.03528204909358	7.30041988914221	6.69913200204248	6.81238225692424	6.93938302516912	7.1323986968771	-0.0025392536286401	0.992282284310963	0.99713419623776
Merged-chr17-5596690-4	chr17	5596610	5596810	+	814.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	104110.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	3.77139811576273	4.0895076811865	3.87272365118342	3.97446548048277	3.84571007373572	3.5946991585506	3.75688571330408	3.71638523718658	-0.580418581436877	0.205324238927431	0.508859472252119
Merged-chr1-180720531-3	chr1	180720431	180720631	+	873.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5512.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	3.93785838162115	3.85061533282381	3.4032620849348	3.643710877628	3.85180091025167	3.70495792684038	3.68348197812619	3.69623396154167	0.0567251379759889	0.906341436639063	0.965332391151937
Merged-chr14-64652504-4	chr14	64652418	64652618	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081177)	promoter-TSS (NM_001081177)	-13.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	6.18799271007819	5.94615547551549	5.31942785568057	5.90247981339792	5.99969775656055	5.9789093448508	6.15727742746037	6.25652912825399	0.350605816539484	0.207840340060407	0.511983712113867
Merged-chr3-153902995-4	chr3	153902902	153903102	+	798.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031870, intron 1 of 19)	RMER16_Mm|LTR|ERVK	1889.0	NM_001282054	55993.0	Mm.272226	NM_031870	ENSMUSG00000005493	Msh4	4930485C04Rik|AV144863|mMsh4	mutS homolog 4	protein-coding	3.49557174031041	3.84757824756291	4.06234790304654	3.34688234316139	3.93268238490026	4.1006093426661	3.81828262357653	3.55692355140815	0.44800404099592	0.389024901993848	0.689364755502393
Merged-chr16-94371634-4	chr16	94371491	94371691	+	855.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019543)	promoter-TSS (NM_019543)	-576.0	NM_001159617	56176.0	Mm.474449	NM_019543	ENSMUSG00000022940	Pigp	Dcrc|Dscr5	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding	3.94972777417597	3.61630778738139	3.64484080280219	3.7682236801821	3.92707198784581	3.64118527728904	3.88730352810692	3.992290806583	0.350513175526717	0.443286269200716	0.729879993711436
Merged-chr17-27018034-4	chr17	27017959	27018159	+	784.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001251881)	promoter-TSS (NM_001251881)	24.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	3.8704956955214	3.89126398138033	3.87104606936659	3.74434177275404	4.05218270644761	3.93944129913662	3.80441718217861	4.01144822615848	0.344735623683835	0.423815531793278	0.715700254745285
Merged-chr11-102317772-10	chr11	102317707	102317907	+	941.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001044383)	promoter-TSS (NM_001044383)	-520.0	NM_001044383	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	4.00570096866242	3.90140760301363	4.28916595917529	4.20996308978458	4.03108459442328	4.18287304778273	4.31073607998729	4.55189516321628	0.405021045101677	0.338678613873551	0.648111538678755
Merged-chr1-74295693-4	chr1	74295597	74295797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027154, intron 1 of 11)	intron (NM_027154, intron 1 of 11)	8639.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	7.39501545975976	7.74337084541961	7.61034751293032	7.10070161299905	6.90311773456669	6.9141545999423	6.60268391061665	6.54363492897484	-0.991206544201042	1.668205470482e-05	0.000435427932465854
Merged-chr14-44091724-4	chr14	44091610	44091810	+	987.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-10944.0	NM_007895	13587.0	Mm.327386	NM_007895	ENSMUSG00000072596	Ear2	EAR-13|EAR-2|ECP|ECP 2|Raf3|Rnase2	eosinophil-associated, ribonuclease A family, member 2	protein-coding	6.2690229499539	6.29415464208973	6.84063717231393	5.44301634159299	5.92241228310793	6.2034219736491	6.36067451757206	6.14925149718401	-0.196426197812568	0.55308956259739	0.799974396526481
Merged-chr7-19180930-4	chr7	19180821	19181021	+	970.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162996)	promoter-TSS (NM_001162996)	-249.0	NM_001162996	72205.0	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	4.84303380514478	4.78876924331469	4.88004138393871	4.83385721651208	4.93974583021603	4.73588915146063	4.74589385650969	5.19059246032607	0.168662230727635	0.60938607757521	0.830967173169002
Merged-chr10-42276785-4	chr10	42276688	42276888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019740)	promoter-TSS (NM_019740)	-46.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	7.96913424735426	8.31161324162674	8.02672067907635	8.39587091691774	8.36244723712765	8.31618495472248	8.35960186539376	8.11411733882237	0.121178687876222	0.493489552109799	0.764258672126877
Merged-chr11-74505431-6	chr11	74505300	74505500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	MER2|DNA|TcMar-Tigger	84758.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	4.57874371235807	4.82565599802009	4.89362324670654	4.65087469095999	4.90407334783739	5.09922382988209	4.93719503935884	4.74299153599241	0.38348007207514	0.248033681213756	0.559137354284593
Merged-chr1-161875907-4	chr1	161875798	161875998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151684, intron 1 of 24)	intron (NR_151684, intron 1 of 24)	784.0	NM_172645	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	5.58554307513634	5.4630917456079	5.47882168633248	5.54289280902634	5.56945281443352	5.68004938449247	5.42331615453617	5.35769569356522	-0.0085275896952389	0.974813541670085	0.990966385645806
Merged-chr7-30492951-4	chr7	30492897	30493097	+	763.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019546)	promoter-TSS (NM_019546)	-661.0	NM_019546	56189.0	Mm.270525	NM_019546	ENSMUSG00000036892	Prodh2	2510028N04Rik|2510038B11Rik|HYPDH|MmPOX|MmPOX1|POX1	proline dehydrogenase (oxidase) 2	protein-coding	3.25125173457675	3.50911650282466	3.25160696407499	3.50320185366873	3.50970214234994	3.72090343173582	3.4823610100697	3.87594964675072	0.834925816238831	0.108017061977237	0.362615972007629
Merged-chr15-79546696-4	chr15	79546612	79546812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199080)	promoter-TSS (NM_199080)	29.0	NM_001040187	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	7.48099163606127	7.49112995701644	7.29540137358308	7.138616153652	7.3576809018312	7.54450032886439	7.05262153890045	7.48619720019445	0.0270951174535034	0.893268204562204	0.960089656965393
Merged-chr11-62808162-4	chr11	62808055	62808255	+	874.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12098.0	NM_053169	94092.0	Mm.117087	NM_053169	ENSMUSG00000047821	Trim16	9130006M08Rik|AI482483|EBBP	tripartite motif-containing 16	protein-coding	4.25254218006612	3.95511595297749	4.21027856638021	4.18034424515749	4.12362483402011	4.33654692409016	4.23382265770541	3.74040353253031	-0.0711316277549744	0.868952088712283	0.950890741040292
Merged-chr5-139379193-4	chr5	139379092	139379292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033147, exon 1 of 1)	non-coding (NR_033147, exon 1 of 1)	-1447.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	5.66719169611113	5.52923443029335	5.40271471754796	5.96900000645842	5.42450372043785	5.12999251028243	5.25280980293768	5.39895430434382	-0.635858749377491	0.034279975406902	0.182978205435912
Merged-chr17-42938928-4	chr17	42938841	42939041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62517.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	6.46677080056978	6.47552308522318	6.20356251598533	6.66724793346713	6.52475759941221	6.67732311332429	6.40047864363175	6.5926308415858	0.102734751582832	0.647256536081359	0.851605116430591
Merged-chr16-78197639-4	chr16	78197559	78197759	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57795.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	5.09434012111308	5.13793106010922	5.02030678221794	5.42142960679758	5.76545041956565	5.64448565527873	5.64249988253072	5.26186156734042	0.6997204316651	0.0222694565177507	0.137585074687699
Merged-chr12-108766298-1	chr12	108766198	108766398	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-27013.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	5.24882367436466	5.2161345694115	5.42009896470042	4.91021724060416	5.30226366338052	5.29673030765232	5.22372326546793	5.049368639409	0.0603526839266792	0.84655228261809	0.941954402290774
Merged-chr2-147013438-4	chr2	147013285	147013485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356402, intron 1 of 28)	CpG	386.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	5.80310771023596	6.07726246135434	6.0628397322986	5.77846041388236	6.29453326826876	6.28027108411715	6.50226068765508	6.05850207188997	0.565323444537901	0.0204120587041291	0.12977044716874
Merged-chr6-97417110-4	chr6	97417015	97417215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 4 of 23)	intron (NM_145148, intron 4 of 23)	42171.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	5.55566306411445	5.89527303139852	5.63651491470417	5.40297114609582	5.66156321314483	5.67619115813904	5.63342565261764	5.55272922722458	0.0145455288218725	0.957770759638097	0.984917255520481
Merged-chr17-12656012-4	chr17	12655913	12656113	+	817.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009202, intron 8 of 10)	ORR1E|LTR|ERVL-MaLR	19825.0	NM_009202	20517.0	Mm.594	NM_009202	ENSMUSG00000023829	Slc22a1	Lx1|Oct1|Orct|Orct1	solute carrier family 22 (organic cation transporter), member 1	protein-coding	3.85169835079451	4.451381531324	4.44522417952489	4.5279373934015	3.95530315245966	4.20669719704265	4.64010804778831	4.36050817980636	-0.0981020806265342	0.82804242463946	0.934031120145354
Merged-chr18-34538349-4	chr18	34538244	34538444	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3984.0	NM_009290	20890.0	Mm.558	NM_009290	ENSMUSG00000012282	Wnt8a	Stra11|Wnt-8A|Wnt-8D|Wnt8d	wingless-type MMTV integration site family, member 8A	protein-coding	4.8002339469183	4.95002404879	4.11747861878093	4.74218859647952	5.13204101280579	5.0490425646351	5.22037832750744	4.87191765009937	0.759851436526238	0.0422517959866162	0.208512357048187
Merged-chr12-99974605-2	chr12	99974497	99974697	+	711.0	f0_balb.idr|f0_c57.idr	intron (NM_001164426, intron 2 of 2)	L1M4|LINE|L1	10098.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	3.92596778156295	3.44291797002576	3.78231065382701	3.89528404383704	4.1333594697958	3.61563906009832	3.42359233866963	3.92413206693604	0.100654042507688	0.848034636107536	0.942612651933043
Merged-chr12-40569265-4	chr12	40569165	40569365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	123212.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	6.76891147278507	6.67762725252769	6.68512066805616	6.62480585514914	6.26890322595577	6.94547024652934	6.52845449336472	6.18417621804978	-0.259691065435838	0.285730113553855	0.597437981101283
Merged-chr8-98999349-3	chr8	98999241	98999441	+	837.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12546.0	NR_110579	100873092.0	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	-	predicted gene 15679	ncRNA	3.84352760070588	3.60111856213958	3.54696809864927	4.08178876592868	3.29870393503825	3.60645005384332	3.53311021373499	3.16103237597602	-1.2759338112835	0.0201666633175966	0.128797032596071
Merged-chr15-59795886-4	chr15	59795791	59795991	+	876.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045076)	promoter-TSS (NR_045076)	-932.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	4.42453239067792	4.19861231645641	4.77936972780747	4.5322291058463	4.11449704559852	3.93311206871151	4.18417244527788	4.5394227918152	-0.688924642913876	0.1050265140369	0.356433758675821
Merged-chr11-23979527-4	chr11	23979424	23979624	+	680.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84254.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	3.7078941148125	3.65433430864297	3.60293868543091	3.61464448953001	3.60754838378026	3.71951007873145	3.78916090691643	3.60099782897256	0.110954830639051	0.810497731970471	0.926833751678515
Merged-chr18-10609674-1	chr18	10609574	10609774	+	1000.0	f0_balb.idr	intron (NM_001081222, intron 1 of 10)	CpG	678.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	4.99848424276851	5.15134637345284	5.37619330782283	5.00541315513713	5.07679759349813	5.43495288528397	5.20660762831968	5.13423219076036	0.151752091465622	0.622692292430641	0.838617548681613
Merged-chr2-180921004-4	chr2	180920905	180921105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173761)	promoter-TSS (NM_173761)	-69.0	NM_173761	228994.0	Mm.30205	NM_173761	ENSMUSG00000038848	Ythdf1	2210410K23Rik|8030473O16	YTH domain family 1	protein-coding	8.22645471855485	8.202213997727	8.08276441597861	7.93699512087002	7.96716110801624	8.22129383311919	8.09439404761668	7.82244390994234	-0.101916674194728	0.558262486424533	0.8030434967081
Merged-chr15-77798152-4	chr15	77798032	77798232	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	-41122.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	5.42138297340652	5.14491266880501	5.39492586199314	5.26645677902277	5.51770586085539	4.98939215460565	4.94793712815997	5.47151923473957	-0.0634633577133481	0.842510229376174	0.940233543167506
Merged-chr7-67225064-4	chr7	67224968	67225168	+	781.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357962)	TTS (NM_001357962)	2452.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	3.73190354506898	3.84582498383223	3.78398797931189	3.79760411944269	3.80981238754847	3.73969411197793	3.9537012236045	3.50130022713405	-0.0813527209953353	0.860308262963807	0.947128143348069
Merged-chr7-25794957-4	chr7	25794852	25795052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6219.0	NM_001190975	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	5.96962778575768	6.04132386714982	5.70680716988682	6.01781504969932	5.94370085454774	5.77372065966355	5.96157184633734	5.96642476297044	-0.0520478141355343	0.832342160720637	0.935811380023918
Merged-chr14-46882786-4	chr14	46882699	46882899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028966)	promoter-TSS (NM_028966)	-166.0	NM_028966	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	7.31016867233122	7.27415666036773	7.37204869059096	7.47469625145315	7.08693223370363	7.09077971179725	7.42087938217224	7.35703174481068	-0.164072156184833	0.386028601736633	0.687395803472158
Merged-chr10-44457344-4	chr10	44457218	44457418	+	986.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007548, intron 1 of 6)	intron (NM_007548, intron 1 of 6)	1430.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.77213386562091	4.94348492122114	5.37084242369519	5.21850452949564	4.78302272168513	4.68905469988858	4.8648950777224	4.99058176392743	-0.528724981276682	0.120306569320769	0.383935675111326
Merged-chr1-86381199-4	chr1	86381096	86381296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6945.0	NM_010341	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	5.727432479749	5.89076191646013	6.0698655337349	5.98767335933395	5.95969125719778	5.95554248502573	5.82307793333887	5.87208206754249	-0.0386116712498036	0.874608082550228	0.952925927223413
Merged-chr7-47122240-3	chr7	47122137	47122337	+	945.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013643, intron 1 of 13)	intron (NM_013643, intron 1 of 13)	10361.0	NM_001163565	19259.0	Mm.4654	NM_013643	ENSMUSG00000030854	Ptpn5	Step	protein tyrosine phosphatase, non-receptor type 5	protein-coding	4.15932715652059	3.90707808856082	4.24726166402412	4.01796228958358	4.50747966020223	3.9186734626405	4.00002141672045	4.20172540497449	0.277366532079835	0.525456279044712	0.783252235625498
Merged-chr2-129594381-1	chr2	129594281	129594481	+	1000.0	f0_balb.idr	intron (NM_001291022, intron 1 of 4)	intron (NM_001291022, intron 1 of 4)	-1081.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	4.217232972567	4.13572089335954	4.35482718874522	4.37405079262025	4.44721801317369	4.39233249583091	4.49603913270109	4.47565022329146	0.403510532503602	0.281199196818147	0.59334817221824
Merged-chr5-72817858-4	chr5	72817737	72817937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	50611.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	6.28545852966209	6.43075688209143	6.58903997207196	5.76950988057974	5.74800735347129	5.52330656064977	5.90231643614351	5.26121262138412	-1.04497033599805	0.000767046513554225	0.0108781836597482
Merged-chr8-104376945-4	chr8	104376803	104377003	+	833.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	L1MC|LINE|L1	18904.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	4.06400920635293	3.86101057219424	4.06461496652559	4.32820383793619	4.02625492842694	3.8687964548685	3.90070122107269	4.23593837372925	-0.229594636471649	0.603426769403197	0.82809560771388
Merged-chr12-117728498-4	chr12	117728404	117728604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 20 of 27)	intron (NM_175930, intron 20 of 27)	-115357.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	5.29734397174843	5.10787655400722	5.07801534339041	5.2446287621063	5.31934403971479	5.03189738960282	5.18296383906326	5.23558143858874	0.0283312111267222	0.923947109223463	0.971874776059645
Merged-chr1-172352582-4	chr1	172352472	172352672	+	934.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	11362.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	5.96575976714038	5.94527028712312	5.86998231491263	5.96155475941857	4.88542544562406	4.68703086946559	4.77421876548467	4.83876934950339	-2.0659907870794	6.97041871947948e-12	6.4184661582643e-10
Merged-chr3-139075471-4	chr3	139075350	139075550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040690)	promoter-TSS (NM_001040690)	-249.0	NM_001356388	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	7.62064028515736	7.6924981481468	8.04387646400359	7.98291180618025	7.59117036698981	7.7817572412299	7.94110890006773	7.46729686332153	-0.190630558419728	0.331817194270762	0.642887910909646
Merged-chr1-64543973-2	chr1	64543873	64544073	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037726, intron 1 of 6)	B2_Mm2|SINE|B2	11169.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	3.23655114560748	3.07534948655991	3.23695159428061	3.11750492710314	3.46169077463975	3.63023314821843	3.44770788880135	3.35269511172065	1.12108257349574	0.030398201438562	0.168723766390783
Merged-chr2-156306030-3	chr2	156305927	156306127	+	700.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 17 of 17)	B2_Mm2|SINE|B2	-6446.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	3.33148825607844	3.48849243443534	3.27270868990336	3.21166169599909	3.63704078558776	3.18723976521033	3.52951312076137	3.27109661693361	0.355846217734918	0.508681102154716	0.773646122310859
Merged-chr5-65107966-3	chr5	65107876	65108076	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347355, intron 1 of 10)	CpG	408.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	4.42774828943631	4.6536071245335	5.09215787245828	4.46585673856885	4.90387763794531	4.93947521654743	4.36055271515479	4.96837573715518	0.288496612643539	0.460249114795379	0.742490742225721
Merged-chr13-21812352-4	chr13	21812234	21812434	+	914.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175657)	TTS (NM_175657)	550.0	NM_175657	319161.0	Mm.261664	NM_175657	ENSMUSG00000069305	Hist1h4n	-	histone cluster 1, H4n	protein-coding	4.17959949392434	3.78050528387363	4.31144853511598	3.70838752066724	4.00909602606246	4.30837624721341	4.40890584182275	4.50074451834598	0.782933135071902	0.0818599616955098	0.310503508141883
Merged-chr13-110357182-4	chr13	110357076	110357276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177713)	promoter-TSS (NM_177713)	-4.0	NM_177713	238875.0	Mm.30533	NM_177713	ENSMUSG00000046006	Gapt	9830130M13Rik	Grb2-binding adaptor, transmembrane	protein-coding	6.84090734531923	6.94713140661212	6.99591425756348	7.27208509158532	6.82890924880353	6.64160332576162	6.72307384857925	6.2811480079929	-0.55453344754496	0.0145831733481562	0.102769979510765
Merged-chr11-55204889-3	chr11	55204757	55204957	+	868.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153139, intron 1 of 10)	intron (NM_153139, intron 1 of 10)	517.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	3.25552153694115	3.65000206877014	3.38789993508734	3.35958024986219	3.09007631547737	3.56903661963039	3.70387208514381	4.23282803658957	0.905484534554587	0.127783388642318	0.397718218286463
Merged-chr7-128068041-4	chr7	128067932	128068132	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008401, intron 2 of 29)	intron (NM_008401, intron 2 of 29)	5392.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	5.11641581420342	5.13836556289968	5.01246125233655	5.26904870482269	5.10442280391836	5.25819624739752	5.36108131947882	5.32905089389387	0.203282513454942	0.494892414492691	0.765380871135718
Merged-chr15-73624900-2	chr15	73624800	73625000	+	793.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033219)	promoter-TSS (NM_001033219)	-156.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	3.5334624137109	3.71771607938006	3.17507386625816	2.85221295722308	3.85190303381588	3.35727810466227	3.46614120053105	3.36476223367806	0.53864292119134	0.384600029496402	0.686101390965525
Merged-chr5-31526966-6	chr5	31526822	31527022	+	888.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009206)	promoter-TSS (NM_009206)	-73.0	NM_001359154	20534.0	Mm.352407	NM_009206	ENSMUSG00000029141	Slc4a1ap	kanadaptin	solute carrier family 4 (anion exchanger), member 1, adaptor protein	protein-coding	3.74064245948225	3.6714501952597	3.53521349346258	3.43242115843215	3.4559411929877	3.70778204720087	3.21251046681232	3.78550438011537	-0.121986016784621	0.815333748320904	0.928732570601294
Merged-chr1-187586780-1	chr1	187586680	187586880	+	660.0	f0_c57.idr	Intergenic	Intergenic	-22226.0	NM_001243792	26381.0	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	2.20926053170974	2.23797276729628	2.20942849298034	2.04490186125426	2.47931963275626	2.95959252655121	3.12449953270167	2.72268084736207	4.26844255664998	1.12044920018006e-06	3.8846786955488e-05
Merged-chr9-86592243-3	chr9	86592156	86592356	+	878.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008615, intron 12 of 13)	intron (NM_008615, intron 12 of 13)	20203.0	NM_027100	69519.0	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	3.60795621172986	3.5571849031516	3.5012841213136	4.22270604903066	3.21997225007872	3.30067218362553	3.31073783722662	3.44236872960605	-1.54639570665065	0.00662151862031842	0.0583958708803921
Merged-chr3-131892172-3	chr3	131892071	131892271	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-193121.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.72829598923797	3.57945643324727	3.80847045458624	2.77658947007201	6.21022226421483	6.18394046925753	5.79627909900118	5.80535289287936	6.78423539423755	9.84244070682763e-35	1.89344618127374e-31
Merged-chr16-20610724-4	chr16	20610625	20610825	+	954.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177940)	promoter-TSS (NM_177940)	36.0	NM_001357404	208624.0	Mm.24950	NM_145939	ENSMUSG00000033809	Alg3	D16Ertd36e|not	asparagine-linked glycosylation 3 (alpha-1,3-mannosyltransferase)	protein-coding	4.54364102734059	4.5691862672503	4.54435123597149	4.52483899488673	4.81763520317608	4.84081462084538	4.64600806526812	5.00598964579033	0.61356178645801	0.0694713193631312	0.281921268013017
Merged-chr4-58546273-4	chr4	58546193	58546393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	7000.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	5.38276473541257	5.33152364547328	5.69829230961275	6.13660902999847	5.79525805602577	5.35655200190863	5.87771472484313	6.11975689963654	0.192296991093879	0.562908877524653	0.805927740950101
Merged-chr17-27027602-4	chr17	27027505	27027705	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149749, intron 1 of 6)	intron (NR_149749, intron 1 of 6)	1022.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	5.15567437049459	5.7465807734772	5.35688606870008	5.66077655721697	5.71504461583866	5.59251612653543	5.20138039043286	5.60465434699165	0.0564963820404657	0.853755023224752	0.944903737664624
Merged-chr1-86430221-4	chr1	86430124	86430324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3895.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	6.56171039959091	6.34986014840576	6.34739483663675	6.24349829916328	6.36482254308247	6.04999693993497	6.60285940579326	6.30617972839946	-0.0327263211910542	0.889417950556401	0.95852771969437
Merged-chr10-39421005-4	chr10	39420905	39421105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	51206.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	7.65096113676263	7.88954813696415	8.14876279056702	8.23308672693892	7.77581228004295	7.80324887700989	8.098162131486	7.81224868380451	-0.168223795240198	0.390959931537245	0.690867352703316
Merged-chr9-107904908-4	chr9	107904777	107904977	+	988.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2012.0	NR_109782	19882.0	Mm.3901	NM_009074	ENSMUSG00000032584	Mst1r	CD136|CDw136|Fv-2|Fv2|PTK8|Ron|STK	macrophage stimulating 1 receptor (c-met-related tyrosine kinase)	protein-coding	5.1545278414296	5.32098303044335	4.60426138693079	5.06591318867006	5.30135425503525	5.00797206973934	5.13001644454262	5.55870331890947	0.376998031022891	0.267140714098124	0.578837409095597
Merged-chr18-38631744-4	chr18	38631642	38631842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30474.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	6.33819124711663	6.27316916282526	6.3393112050823	6.38112765620147	6.17534513181975	6.34176571392029	6.28879996454136	6.50315163623502	-0.0163454369911616	0.9409547131209	0.978676631829834
Merged-chr5-41187476-3	chr5	41187375	41187575	+	846.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	520216.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	2.81038475200713	2.81833473417543	3.10398389975107	3.04811120696247	3.40443001192179	3.4059530748583	3.53295282357344	3.72243274272814	2.08708453097724	0.000612547268880306	0.00908533070465332
Merged-chr9-22070886-4	chr9	22070761	22070961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040406)	promoter-TSS (NR_040406)	-141.0	NR_040406	100503652.0	Mm.439941	NR_040406	ENSMUSG00000096981	Gm16845	-	predicted gene, 16845	ncRNA	7.85515651555582	8.19317777084753	7.88710275502503	8.1434063228658	8.22819074981612	8.26045298190952	8.44388151312656	7.9973053404718	0.265020167382171	0.140677389286426	0.417185063412154
Merged-chr14-30043513-4	chr14	30043411	30043611	+	979.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 45 of 46)	intron (NM_001083616, intron 45 of 46)	20878.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	5.10329645994658	4.99281300609677	5.03501126014515	5.1089849348168	5.52107505074349	4.89668558405782	5.37533020489188	5.34454482070232	0.467607067488852	0.132846743749563	0.405919655434649
Merged-chr4-109204547-3	chr4	109204441	109204641	+	942.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2269.0	NM_001346502	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	3.84664602008974	3.97970741641236	3.7420249455543	4.17010377455144	3.73365992527401	3.6833132535696	3.6723186826732	4.07486020325998	-0.448847499591675	0.341391206758318	0.650444129831912
Merged-chr9-25151887-4	chr9	25151774	25151974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020586)	promoter-TSS (NM_020586)	-93.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	8.99024513748184	9.23857523852619	9.45987581422785	9.29768149764767	9.35465195568103	9.32962779662193	9.61899221968594	9.26149390287772	0.17254642873639	0.295333854318882	0.607364100260525
Merged-chr3-144604370-3	chr3	144604256	144604456	+	838.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2C2|LTR|ERVL	33929.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	3.6963416021818	3.82458890863558	3.64102962264754	3.88032878683784	3.8748753812925	3.86873943519252	3.73542239036172	3.84887833822987	0.172611160960704	0.701262443065812	0.879638136843261
Merged-chr16-97431469-4	chr16	97431365	97431565	+	868.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019517, intron 8 of 8)	ID_B1|SINE|B4	31440.0	NM_010846	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	3.81993061089734	3.88479730272298	3.98980665298498	4.15145846541598	4.16531273687894	4.44548831326323	4.6492119605085	4.18392589788423	0.969612560486361	0.0249381328648672	0.148181931646079
Merged-chr14-66189037-4	chr14	66188937	66189137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 4 of 30)	intron (NM_001162366, intron 4 of 30)	24787.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	5.57029333015459	5.45153923362912	5.43213873981197	5.51858956697243	5.74880743038071	5.51709008800685	5.48980717645451	5.56734493370638	0.168681046758917	0.527662254232348	0.784511156010534
Merged-chr7-80143526-4	chr7	80143427	80143627	+	957.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28177.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	5.25355241156729	4.78036494086323	5.10364176201936	5.40388570343822	5.01823444923105	4.95470989933735	4.67016519290845	5.13175108165094	-0.405652320496988	0.236920056575255	0.54700150657517
Merged-chr9-106908915-3	chr9	106908829	106909029	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153413, intron 46 of 52)	intron (NM_153413, intron 46 of 52)	-16991.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	3.93561198479381	3.91394509672797	4.13108002094705	4.56955309837673	5.51939522361987	4.97655493897572	5.6694485091777	4.9696595893937	2.32182473510303	9.00720054332005e-07	3.18649864549194e-05
Merged-chr9-9238999-4	chr9	9238902	9239102	+	954.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027823)	promoter-TSS (NM_027823)	11.0	NM_027823	71544.0	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding	4.86288889054754	4.83664025573227	5.15791299861702	4.83983110841781	4.83687616965749	4.8002150798596	4.68569754927479	5.23867507952084	-0.0349691614129679	0.918385731780459	0.969964358880631
Merged-chr10-9707203-4	chr10	9707058	9707258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22436.0	NR_038036	620417.0	Mm.378085	NR_038036	ENSMUSG00000111901	Gm6150	-	predicted gene 6150	ncRNA	7.64154697667317	7.62825412836741	7.54725399542601	7.8803466758198	7.53146996280783	7.26094728318764	7.61371323033932	7.47722111467191	-0.276858788433321	0.133483455417014	0.406812753145011
Merged-chr12-3780841-4	chr12	3780732	3780932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007886, intron 18 of 18)	intron (NM_007886, intron 18 of 18)	-26148.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	5.22985546816666	5.47416101492227	5.65347538607227	5.70615628808719	5.83003779559994	5.1939511234062	5.30094621324218	5.12294509787584	-0.215618004144126	0.50907352132086	0.773879165668528
Merged-chr17-56939367-3	chr17	56939265	56939465	+	863.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-3977.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	3.59669793506886	3.41514321319073	3.92507404853867	3.45684454664169	3.55238034692968	3.41264537722952	3.47254896963554	3.79252781803511	-0.1252687739017	0.807827830870579	0.925894979224023
Merged-chr11-83550536-4	chr11	83550447	83550647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEa|LINE|L1	-20029.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	6.35682481986657	6.50622542591473	6.16554715350833	6.02558503813548	6.33378938536685	6.51557924882998	6.49137144378961	6.2609310345451	0.204486731488308	0.388217646376872	0.688894691151261
Merged-chr2-103627368-4	chr2	103627248	103627448	+	991.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	B3|SINE|B2	61038.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	5.77897758947374	5.58201582381072	5.6921968481233	5.52672564842534	5.36877274369736	5.07813120831929	4.78572500440916	5.12400662245039	-0.932412811050188	0.00259959442928134	0.0285682463921285
Merged-chr13-37622806-4	chr13	37622677	37622877	+	897.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-203261.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.85334460945137	3.98492367500261	3.74974218824321	4.06485415561304	3.87351592146315	3.62858468354751	3.78775189278627	4.03689395086449	-0.248620934400969	0.586377187936804	0.818595756960672
Merged-chr12-117385508-4	chr12	117385405	117385605	+	958.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48493.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	4.50773322085539	4.64090162190235	4.46289740325092	4.40432461234203	5.03884303734518	4.77018667784563	4.93268152073572	4.85571767554682	0.868104837261582	0.00991212281792319	0.07842763339895
Merged-chr7-127025357-4	chr7	127025258	127025458	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010772, exon 2 of 5)	exon (NM_010772, exon 2 of 5)	1121.0	NM_010772	17188.0	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	5.40149041413518	5.70476634287703	5.34330044712249	5.41026078970341	5.26901727913261	5.13958153290433	5.37548157332699	5.61056820485701	-0.201387315110321	0.492793961341918	0.763768418925334
Merged-chr7-38001701-2	chr7	38001603	38001803	+	825.916626	f0_balb.idr|f1_balb.idr	intron (NM_011274, intron 1 of 10)	intron (NM_011274, intron 1 of 10)	17849.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	4.05812180706061	3.98904238842153	4.17867640729123	4.3525780314137	3.28225311265267	3.47051283917598	3.34164095476858	3.42008659057362	-2.63894612125132	1.10798443433503e-06	3.84708410007479e-05
Merged-chr1-191280899-4	chr1	191280810	191281010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37208.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	7.55488478044798	7.61367879757173	7.4954272592831	7.18411180440182	7.18996219614627	7.17783057372986	7.06567535529941	6.87024525446677	-0.511139301918548	0.0113725357832194	0.0864752739464364
Merged-chr12-100277758-4	chr12	100277666	100277866	+	907.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045741, intron 1 of 3)	intron (NR_045741, intron 1 of 3)	1157.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	4.02423283334432	5.07166223623523	4.32909009395559	4.63270145223436	4.38231080756222	4.20734107494494	4.26418865804147	4.23265108086272	-0.699057711027719	0.117214499220094	0.378682551510059
Merged-chr13-81132899-4	chr13	81132788	81132988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	168814.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	6.98614021859757	6.94118887996469	7.06079963747215	7.05605313651261	6.96007244650947	7.09938279412044	6.84737088543442	7.01966788946071	-0.044143118001952	0.814523063814289	0.92840582625946
Merged-chr1-91053929-4	chr1	91053821	91054021	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	477.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	4.70134732043087	4.72620835091363	4.74057963798115	4.60220811793361	4.77891006604491	4.66786228059309	4.95690684097048	4.81099067839225	0.256887990241112	0.439575575971023	0.727408272116972
Merged-chr7-116457911-4	chr7	116457831	116458031	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14473.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	5.68033411473662	5.45869032001351	5.35630566446599	5.80618258708646	5.57757468827492	5.37015304774133	5.29886300245131	5.47036473891319	-0.279867207650239	0.330535242484267	0.641871774561785
Merged-chr9-74425823-3	chr9	74425732	74425932	+	881.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	315498.0	NM_001033500	546144.0	Mm.335289	NM_177908	ENSMUSG00000044976	Wdr72	AW558070|D230040E23	WD repeat domain 72	protein-coding	3.40119142426117	3.43954354162137	3.4606785852017	3.76939688408616	3.3440878178207	3.51586503225231	3.83716414287166	3.56934666803091	0.112423065384014	0.830369540509524	0.934980877782147
Merged-chr6-97469330-2	chr6	97469227	97469427	+	991.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-10041.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.5007185296984	3.37753068287443	3.38641263267397	3.63138736781303	3.82742260344403	3.55901121221447	3.43237466875139	3.44329074202573	0.314410147324005	0.539746387170489	0.792406302070178
Merged-chr13-55437406-4	chr13	55437314	55437514	+	837.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY5_I-int|LTR|ERVK	-7658.0	NM_001286063	26385.0	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	4.24250587085621	4.55813051223767	4.59595882380228	4.05824762585115	4.59510291457486	4.47132548343577	4.36713438196565	5.04115643496905	0.613828305728126	0.134886509862539	0.408839148894254
Merged-chr4-40233478-3	chr4	40233374	40233574	+	716.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172689, intron 2 of 17)	BGLII|LTR|ERVK	6351.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	4.37761292296809	3.97696165552174	3.67784849238931	3.72762293262116	3.72632465444255	3.91087304903831	3.60513850707127	3.83956599853478	-0.539336424050301	0.272585751373506	0.584022069622983
Merged-chr11-115153955-5	chr11	115153706	115153906	+	929.342834	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021411)	promoter-TSS (NM_021411)	-372.0	NM_021411	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	3.84516348124188	4.20766625663853	3.90237902842291	3.72592067033225	4.22581552167781	4.53378468312059	4.04186062238621	4.40062574137736	0.987656869565305	0.0222868291703276	0.137664496428675
Merged-chr2-129258975-4	chr2	129258884	129259084	+	664.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38228.0	NM_181589	70466.0	Mm.45785	NM_181589	ENSMUSG00000048327	Ckap2l	2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm	cytoskeleton associated protein 2-like	protein-coding	3.45208443418737	3.37712075207205	3.06972154187228	3.54765157864073	3.67439370581561	3.7260231611721	3.3832954104313	3.39414718410524	0.569361862306872	0.297117465404994	0.609239307177774
Merged-chr5-24598753-4	chr5	24598644	24598844	+	882.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025891, exon 2 of 13)	exon (NM_025891, exon 2 of 13)	3258.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	4.22197020212787	4.48684818082105	4.55805841264603	4.40004489664998	4.23434800088761	4.48709784024272	4.3395414882319	4.22009582222651	-0.245074359462031	0.521514228196909	0.781458912231649
Merged-chr5-100820911-4	chr5	100820818	100821018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172405)	promoter-TSS (NM_172405)	17.0	NM_172405	70681.0	Mm.486560	NM_172405	ENSMUSG00000035234	Abraxas1	3830405G04Rik|5630400M01Rik|AI506069|AL024423|AV118690|Ccdc98|Fam175a	BRCA1 A complex subunit	protein-coding	5.81125387300963	5.47638107551544	5.74600664857643	5.62531890412472	5.51926481935545	5.2836988566332	5.52002758003711	5.37197064512016	-0.397979420705205	0.147844382274887	0.429267768459732
Merged-chr2-158379922-4	chr2	158379818	158380018	+	881.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175692, intron 3 of 4)	B2_Mm2|SINE|B2	4280.0	NM_175692	319317.0	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	4.3609750164296	4.10086629272995	4.1322416119668	4.28192483102584	4.54493589312974	4.44682040216586	4.11501668809706	4.44011728077276	0.419932635956578	0.285205207398699	0.596953252281083
Merged-chr15-94592258-7	chr15	94592178	94592378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2454.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	5.02438737453125	5.07652774524327	5.15404739254855	4.92472207983051	4.93912946705917	4.62175367461762	4.85871383230668	5.51823440582853	-0.0233127961995355	0.947720452898166	0.981348536548879
Merged-chr11-23974259-4	chr11	23974162	23974362	+	832.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-78992.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	4.13503466918984	4.09699962730838	4.51017215657044	4.44064996061686	4.08269831151589	4.04911045097838	4.33720878679517	4.18061060283117	-0.372205626718527	0.365886083948007	0.670510957016407
Merged-chr17-47768866-4	chr17	47768767	47768967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-16877.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	7.51664762015215	7.4955211754832	7.55429788777016	7.52020112685335	7.59995755001534	7.61909302693477	7.61999648126867	7.59311615908504	0.114353793725323	0.483451343895976	0.757810293808838
Merged-chr1-124045503-7	chr1	124045459	124045659	+	797.221436	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199021)	promoter-TSS (NM_199021)	0.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	3.57202335326719	3.44455963247203	3.95320997397991	3.62042097635425	3.52105513881713	3.57220354692989	3.76068285782731	3.5139863756862	-0.197669497926377	0.6905691483351	0.874020189003077
Merged-chr1-55055532-4	chr1	55055477	55055677	+	905.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026424, intron 1 of 3)	intron (NM_026424, intron 1 of 3)	2807.0	NM_001039710	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	3.91684135370481	3.88714357215122	4.14896684260405	4.19822832044054	4.97076699062933	4.69295109435388	4.78209854696597	4.80295820184286	1.72189880425441	1.32425159524799e-05	0.000355157891100816
Merged-chr10-20076960-4	chr10	20076850	20077050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 12 of 29)	intron (NM_008580, intron 12 of 29)	-71970.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	6.01254328601353	6.37472492097675	5.97093276759174	5.79283099533809	5.89182695753725	5.88368841495044	5.75481801914904	5.70232551133117	-0.373614557761904	0.16070178603597	0.448974916516709
Merged-chr19-32182032-4	chr19	32181926	32182126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	28987.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	6.75965295331571	7.0708410891054	7.22290719409891	6.65329567249403	6.07430336255126	6.15435945536431	6.25344112368116	5.88983956279168	-1.23259992970587	4.91688868775432e-07	1.82661388259741e-05
Merged-chr18-73821733-1	chr18	73821633	73821833	+	595.0	f1_balb.idr	Intergenic	Intergenic	-6341.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	2.47994684146418	2.14282769437628	2.19277963709036	2.00191598662642	2.37583216450079	2.65346537006294	2.53283580528371	2.54202315832061	1.95529696303184	0.013464779937527	0.0973498802613749
Merged-chr2-170195737-3	chr2	170195620	170195820	+	588.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53045.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	3.41185025302473	3.44801342880575	3.36018388649073	3.30192206674738	3.045059340061	3.17171777888579	3.11694373205247	3.18797253304811	-0.972338853206593	0.0769653066082433	0.299942664677925
Merged-chr12-75694615-4	chr12	75694524	75694724	+	861.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	-25087.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	4.20563965175487	3.99347076479078	4.33041125913329	4.40572386665019	4.25187591564441	3.79627106483197	3.8442911239792	4.15947892658087	-0.541721774334098	0.222840026356049	0.530983202865467
Merged-chr7-128089346-4	chr7	128089238	128089438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008401, intron 12 of 29)	L1M2|LINE|L1	26698.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	6.37152371588791	6.20780560520045	6.00261232352771	6.02687193343265	6.2177892495899	6.03654256080273	6.40524357811664	6.16740705176457	0.0979681831173367	0.681840562155714	0.869647747559641
Merged-chr9-64447755-4	chr9	64447657	64447857	+	813.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 1 of 24)	intron (NM_001134399, intron 1 of 24)	62131.0	NM_001134399	214058.0	Mm.127721	NM_172522	ENSMUSG00000036466	Megf11	2410080H04Rik|D130061K05	multiple EGF-like-domains 11	protein-coding	4.40782399164845	4.28040632604403	4.16314963461355	4.35497009454056	4.18921579469264	3.58459674106913	3.95249054851104	4.06708940352311	-0.84857399883145	0.0597953442259556	0.257887348925066
Merged-chr19-29241727-4	chr19	29241620	29241820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10083.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	6.74191885186848	6.73759153234574	6.52535127579469	6.38104314994845	6.78397663904882	6.86072331928759	6.75071358859379	6.63420810922436	0.239902245808563	0.260089496219501	0.571879688317119
Merged-chr4-156234850-4	chr4	156234792	156234992	+	894.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198305)	promoter-TSS (NM_198305)	-35.0	NM_198305	231003.0	Mm.423038	NM_198305	ENSMUSG00000078485	Klhl17	AL022703|BC058738	kelch-like 17	protein-coding	4.46394951939416	4.38512694917117	4.62348073484672	3.96349619053312	4.56682045636367	4.46114589395173	4.60136230594835	4.72750616349384	0.528760749082777	0.183089280526379	0.479931757527872
Merged-chr10-88426554-4	chr10	88426379	88426579	+	905.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 7 of 20)	intron (NM_001004164, intron 7 of 20)	-33108.0	NM_011517	20962.0	Mm.297977	NM_011517	ENSMUSG00000020059	Sycp3	Cor1|Scp3	synaptonemal complex protein 3	protein-coding	3.03268339417625	2.93883918930256	3.27012505859052	2.91043949816653	3.16046220773037	3.20841316812595	3.08531435146962	3.4677815851862	0.78196546771309	0.171580842040584	0.464922036736535
Merged-chr1-184622708-4	chr1	184622605	184622805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65014.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	6.16853261982777	6.17660722762126	5.97700841900921	6.48241125262227	6.10661065566375	6.15385595841519	6.13808857032447	6.18489265835422	-0.138918623563067	0.566723100678819	0.807979871732933
Merged-chr3-54668926-4	chr3	54668816	54669016	+	972.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23899.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	5.41754786299927	5.4607727245065	5.94533340264896	6.11029265075531	5.21095075493638	4.87301920684638	5.39130705131198	5.65719820502893	-0.800848981694392	0.0185049457488426	0.121565623761593
Merged-chr7-119871960-2	chr7	119871860	119872060	+	691.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	23498.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	3.3604530546198	3.28813545697436	3.36090709389901	3.15323992345344	3.35629622223342	3.22730581720237	3.64090939905087	3.24262798673853	0.335504271261736	0.529464794887937	0.785653226520437
Merged-chr2-39011466-4	chr2	39011355	39011555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028809, intron 1 of 3)	intron (NM_028809, intron 1 of 3)	3316.0	NM_028809	74192.0	Mm.38155	NM_028809	ENSMUSG00000026755	Arpc5l	2010015J01Rik|AI852867|ARC16-2|AW555592|AW742746	actin related protein 2/3 complex, subunit 5-like	protein-coding	5.7500644759792	5.9627611430612	5.96668338571391	6.32529781426273	5.95945441338329	5.7632187501386	6.10018364567174	5.91762765697418	-0.152972965332777	0.563849956153391	0.806501535094334
Merged-chr13-51996412-4	chr13	51996314	51996514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-100327.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	5.84370957233349	5.54779154007048	5.30998169233394	5.70597102259753	5.80056127296044	5.61298546200835	5.79303044546066	5.30634726882236	0.047604392312006	0.869335861312146	0.95096677791786
Merged-chr17-34114996-2	chr17	34114896	34115096	+	889.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037970, exon 7 of 13)	non-coding (NR_037970, exon 7 of 13)	4904.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	3.11839743908315	3.86164183123306	3.25030773107201	2.80568692391468	3.42344366831233	3.42819173931146	3.46514462295615	3.36831188156657	0.322411973287372	0.609588917439881	0.831081414209299
Merged-chr3-87500312-4	chr3	87500215	87500415	+	939.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001113238, exon 12 of 12)	3' UTR (NM_001113238, exon 12 of 12)	-25263.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	4.83742427916053	5.28997387092769	5.44856257514346	5.35363782745175	4.49637347947883	4.4796808693336	4.43025841980847	4.5435313384574	-1.59234696570778	7.49336093287786e-06	0.000212922130874776
Merged-chr17-34239321-3	chr17	34239235	34239435	+	863.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010389, intron 1 of 5)	intron (NM_010389, intron 1 of 5)	430.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	3.07627795595426	2.97324862053541	2.79923300579996	2.71384275428507	3.51128590044396	3.36811220573295	3.12591108775547	3.30438338553668	1.82682138799094	0.00183428608290779	0.0218661278002502
Merged-chr10-8772637-4	chr10	8772543	8772743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	113427.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	6.37077884957648	6.16571632820946	6.83749540253661	6.62994915008407	5.93173234263586	6.13764731969416	6.10879011048898	6.38483911025366	-0.575426199964293	0.0250300543198398	0.148565805833312
Merged-chr4-45546099-4	chr4	45545991	45546191	+	866.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-15263.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	3.90684806717055	4.41191250163004	4.02065033203098	4.33514706108825	4.40872627991128	4.43978829257948	4.3758324970413	4.43323443726434	0.508781563382193	0.2111701517693	0.515762969934016
Merged-chr2-38471922-2	chr2	38471822	38472022	+	611.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-39775.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	3.27635046023624	3.15401780855573	3.16534411008129	2.96058781331233	3.19808146031314	3.15291989818979	3.15351189984992	3.10424244740159	0.0835596627382956	0.880901748765686	0.95529443560535
Merged-chr5-77354692-4	chr5	77354551	77354751	+	931.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159518, intron 3 of 5)	intron (NM_001159518, intron 3 of 5)	44167.0	NM_153798	231329.0	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	4.76116714150944	4.61295231886953	4.25567972101038	4.85135694310372	4.54924632159543	4.62205268570481	4.51295743015762	4.57166585941988	-0.199996512707437	0.591611920795033	0.821681299347688
Merged-chr7-92962014-4	chr7	92961931	92962131	+	874.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16|LTR|ERVK	86778.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	4.19680767807655	4.02953460405628	4.33040085568317	4.16767893905876	4.21660296842427	4.32376417212892	4.46702856014751	4.28491091187121	0.346479924219293	0.373634830832865	0.677129891634905
Merged-chr3-103859662-4	chr3	103859554	103859754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008979)	promoter-TSS (NM_008979)	-141.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	7.07447174152072	7.31847013491088	7.43408243116845	7.09150447071163	7.11559021192801	7.24062060662993	7.37880153932025	6.7533038202445	-0.125328821268831	0.559896364312481	0.804106019788834
Merged-chr4-53806616-3	chr4	53806516	53806716	+	796.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY3-int|LTR|ERVK	-19429.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	4.2730532000067	4.28811292188522	4.98250340362616	4.22683185587391	3.45407570602209	3.84085806854498	3.69985807524744	3.35918571276659	-2.54255932700544	2.98979796124528e-06	9.4205767633235e-05
Merged-chr2-164832937-4	chr2	164832874	164833074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008906)	promoter-TSS (NM_008906)	102.0	NM_001038492	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	5.41388498554869	5.81098741682973	5.32296625365099	5.36460422942867	5.2258462592377	5.64721301047852	5.57799587334444	5.62754039761558	0.0504897204461368	0.865251036625482	0.949535988663619
Merged-chr14-54517539-4	chr14	54517447	54517647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013768)	promoter-TSS (NM_013768)	-77.0	NM_001313907	27374.0	Mm.196585	NM_013768	ENSMUSG00000023110	Prmt5	Jbp1|Skb1	protein arginine N-methyltransferase 5	protein-coding	8.92323157651864	9.05989622802183	9.0191267932965	9.00311278378207	9.07631584103227	9.16148604502772	9.16107252018094	9.04126373491696	0.132996850986653	0.329418144402961	0.640755776018183
Merged-chr7-19266141-4	chr7	19266046	19266246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009499, intron 1 of 12)	intron (NM_009499, intron 1 of 12)	5708.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	8.34871202479365	8.63588069359891	8.37150953025975	7.91287953369397	8.52172667350054	8.69961067186066	8.20402501592351	8.07394607199462	0.0776350987158436	0.720080866488394	0.888119741205493
Merged-chr3-21129057-4	chr3	21128948	21129148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-761871.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	5.84207205462575	5.24883759717841	5.6711699768025	5.95218998261108	5.88990967625876	5.99427903812536	5.64251800414548	5.92750036724276	0.247175592477054	0.390042038654144	0.690245822100553
Merged-chr6-108065330-4	chr6	108065223	108065423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178391, intron 1 of 1)	intron (NM_178391, intron 1 of 1)	278.0	NM_178391	74729.0	Mm.56539	NM_178391	ENSMUSG00000034639	Setmar	5830404F24Rik|Etet2	SET domain without mariner transposase fusion	protein-coding	8.43772457916222	8.42536352247793	8.40198034062465	8.47708471214701	8.56171720532412	8.75992218605218	8.86074416623024	8.77806178308127	0.381520157647569	0.0111562706172855	0.0852579113450466
Merged-chr7-43608490-2	chr7	43608390	43608590	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355131, intron 1 of 3)	intron (NM_001355131, intron 1 of 3)	1321.0	NM_028913	74400.0	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	4.9343511423828	5.18672770937219	5.12961724775466	4.41232877603288	4.7796780764568	5.10891626413589	5.04292473071711	4.66024725350744	-0.0604977588589367	0.873297709347715	0.952518471846518
Merged-chr12-86832373-4	chr12	86832280	86832480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52434.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	5.6871007228928	5.50536154386856	5.27508954752779	5.44474543871413	5.26051857374604	5.65846129982467	5.34252697168874	5.53480652680768	-0.0608535950185329	0.832074777659107	0.935710699145492
Merged-chr4-120887896-4	chr4	120887803	120888003	+	960.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 5 of 7)	intron (NM_182929, intron 5 of 7)	33104.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	4.86630098043728	4.8056072407034	4.44879798079462	4.8972185797083	4.89516259177577	5.03931870322128	4.91269984048575	4.89903949922585	0.315830324492158	0.346568973164488	0.654753888817761
Merged-chr8-119876809-4	chr8	119876711	119876911	+	956.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146219, exon 5 of 5)	exon (NM_146219, exon 5 of 5)	14506.0	NM_146219	234796.0	Mm.86446	NM_146219	ENSMUSG00000031828	Klhl36	-	kelch-like 36	protein-coding	4.33990771335216	4.35852991383272	4.47246528584919	4.66463755108567	4.55361651787739	4.21193391642467	4.74571530260512	4.55044974982634	0.118843074163323	0.757107363746334	0.904554066545557
Merged-chr16-12469798-3	chr16	12469694	12469894	+	835.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-341596.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	3.37642168778109	3.44833487312995	3.53900766797413	3.37250692162427	3.39399355879446	3.54730902506169	3.41998931040305	3.31639978990625	-0.0392724228175336	0.937802961353124	0.977460307804652
Merged-chr13-52980324-4	chr13	52980218	52980418	+	899.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017373, intron 1 of 1)	CpG	721.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	4.16891411723353	3.99443118692622	4.07759739831847	3.56180668739244	4.30107761429917	3.6812427671213	4.27580889307938	4.44427557614945	0.639371805616024	0.183834320260769	0.481012966940989
Merged-chr4-88409473-4	chr4	88409363	88409563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 43 of 43)	intron (NM_001081184, intron 43 of 43)	29463.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	5.7718419987359	6.32102260743657	5.52139979222251	6.38551882966183	5.6457301201209	5.05218808829569	6.1312413580822	6.34836968888026	-0.253947910630729	0.657904209479002	0.857579088863969
Merged-chr10-112002759-4	chr10	112002666	112002866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5502.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	5.80944953089879	5.58397303214862	5.97854225594989	6.7004819635617	6.35619237528641	5.64244000157483	6.19115661720221	6.200061829047	0.0257641670604716	0.939198002379052	0.978014082736029
Merged-chr7-99468656-8	chr7	99468502	99468702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028145, exon 2 of 7)	exon (NM_028145, exon 2 of 7)	2598.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	5.47020034719809	5.43858455539194	5.25148109968869	5.39050445838404	5.62438867344623	5.90371556469195	5.62978576595205	5.77296478564084	0.57889648822454	0.0300756899938161	0.167495308510276
Merged-chr16-36670015-1	chr16	36669915	36670115	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-3938.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	4.8923797397353	4.9833663028042	4.96093762194658	4.73676428220606	4.62339080678982	4.5709673325563	4.96899855762694	4.88989747351562	-0.240231855469847	0.481244356627408	0.756503799920103
Merged-chr12-85110819-4	chr12	85110683	85110883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030225)	promoter-TSS (NM_030225)	-50.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	6.31520413874829	6.42547628469543	6.11194685186013	6.23648860618778	6.63999423260587	6.47395490068253	6.66892437988212	6.51993699801215	0.450200440208911	0.0368400948196131	0.191153310188456
Merged-chr11-120492752-4	chr11	120492667	120492867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013770, intron 1 of 10)	intron (NM_013770, intron 1 of 10)	930.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	6.37112896179847	6.80473088054558	6.14050770176845	5.80102073595882	6.36326497611046	6.51246202773176	6.42436270462624	6.15711109728431	0.0676624561898146	0.813160059114182	0.927817858500442
Merged-chr16-32190371-4	chr16	32190289	32190489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	10589.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	7.72710807998692	7.82534933501646	7.36983398525603	7.55884764703996	7.52042518578884	7.36965583400767	7.57688720586572	7.52974220875042	-0.169321977257292	0.359555058749326	0.665421323593206
Merged-chr15-36578092-1	chr15	36577992	36578192	+	743.0	f0_balb.idr	Intergenic	L1MB8|LINE|L1	-22519.0	NM_025712	66696.0	Mm.253627	NM_025712	ENSMUSG00000013611	Snx31	4631426E05Rik	sorting nexin 31	protein-coding	3.42358619155533	3.47072140669214	3.47641473321367	3.67629833269128	3.02501928717763	3.42600734135157	3.24133030743687	2.98277038827621	-1.3016236126338	0.023283324141991	0.141484372718831
Merged-chr11-119249172-4	chr11	119249081	119249281	+	948.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175430, intron 11 of 18)	intron (NM_175430, intron 11 of 18)	-18782.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	4.9060402950739	5.12638970307087	4.41431437047732	4.65131117534331	4.7051203132001	4.54690222124721	4.70151744351526	5.25702485244785	0.0655469147985446	0.867051466032027	0.950234900238554
Merged-chr19-24174188-3	chr19	24174118	24174318	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198985)	promoter-TSS (NM_001198985)	-29.0	NM_001198985	21873.0	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	2.82122511673316	2.74699304721111	2.90684960341546	2.33448219015373	4.24326023307591	3.8475215544408	3.87301735835852	3.56553532767007	6.798829430827	1.37705828748903e-14	2.07640815490749e-12
Merged-chr4-141872992-4	chr4	141872810	141873010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	2010.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	4.63933197899379	4.96693640811281	4.80769088408782	4.44064458830543	5.25399284367853	5.32251054280805	5.26594330752316	4.88079842367155	0.945461324160523	0.00531389431741436	0.0497419362992158
Merged-chr3-87982994-3	chr3	87982898	87983098	+	960.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11905.0	NM_016701	18008.0	Mm.331129	NM_016701	ENSMUSG00000004891	Nes	AA166324|C78523|ESTM46|Ifaprc2|Marc2|RC2	nestin	protein-coding	3.55999498407122	3.5595173305338	3.86647011641248	3.34998785511641	4.38810737148002	4.45709165109498	4.22521536702712	4.39730643373305	2.20046217738219	5.83814967290891e-07	2.13104438752812e-05
Merged-chr7-28467617-3	chr7	28467538	28467738	+	698.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001141921)	TTS (NM_001141921)	15400.0	NM_001141921	80749.0	Mm.483073	NM_030562	ENSMUSG00000030600	Lrfn1	BC004018|SALM2|Semo1	leucine rich repeat and fibronectin type III domain containing 1	protein-coding	3.27308222296737	3.10359771261623	2.97530141268837	3.24210395317852	2.96569721057239	3.21305072143073	3.26019388552196	3.10139452040742	-0.0918410448947476	0.872055060394654	0.951877155217282
Merged-chr13-9099866-3	chr13	9099766	9099966	+	720.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	5985.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	3.438800449027	3.37093830075247	3.60258935939171	3.45913025883125	4.00161197414195	3.14729058746475	3.48242046767191	3.60049160179602	0.437498214206993	0.432726970453728	0.722611204268057
Merged-chr3-127300052-3	chr3	127299962	127300162	+	761.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	108996.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.72650779245312	3.8939173211053	3.93146412805206	3.53673348993843	4.02009136399214	3.95440243406309	3.65662189283419	4.02007731516906	0.444073840818277	0.337336296024017	0.647046813837438
Merged-chr5-92098491-4	chr5	92098346	92098546	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-14702.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	4.31581294918087	4.13597473700238	4.1837042562066	4.44772635041052	3.94713414521622	4.15973790468013	4.25461255904006	4.39499784982886	-0.237336041516634	0.564550738465103	0.806797378143786
Merged-chr16-95827611-4	chr16	95827521	95827721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	71092.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	7.88947227950703	7.98868817963701	8.24479476602349	8.15500354170128	7.95881848294769	8.03060187805349	8.08875488948306	7.99916439647445	-0.0789286916585726	0.633250813587743	0.844533590533651
Merged-chr1-171276540-3	chr1	171276437	171276637	+	961.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008911)	TTS (NM_008911)	4649.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	4.24253878826082	4.32737332543883	4.03565283563093	4.40384780322895	3.15146252837332	3.53426987974514	3.47177956574206	3.67212714487563	-2.60718799143896	1.62736197479229e-06	5.44588613087637e-05
Merged-chr12-83860908-4	chr12	83860791	83860991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073564, intron 2 of 12)	MTEa|LTR|ERVL-MaLR	15921.0	NM_001272056	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	6.03995333570219	6.1419869782149	5.68012322337542	5.84995807157118	6.08443763771007	5.83076066512773	6.12914816272089	6.19376300784594	0.208000681130102	0.409256458191681	0.704924233683108
Merged-chr3-51483996-4	chr3	51483897	51484097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016858)	promoter-TSS (NM_016858)	31.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	7.75470311647244	7.66083701539095	7.80230305473828	7.7487986405676	7.65389746098383	7.73807652211153	7.8519235445017	7.6695644955957	-0.017779676147824	0.91372829123347	0.967658543737832
Merged-chr2-167348688-6	chr2	167348541	167348741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	537.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	4.42547538302405	4.54223708214444	5.06888235838647	4.64207426409991	4.61135776546154	4.50966207948635	4.40666666804478	4.88558779415161	-0.155491684607414	0.684682932974376	0.870914954532591
Merged-chr17-67351537-4	chr17	67351452	67351652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	2907.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	5.60623940177821	5.95817654611893	5.71225395843241	5.88236629158605	5.7057935183036	5.57836729117887	5.89058070958754	5.63033709930715	-0.162494172527217	0.535098441904873	0.789588577217386
Merged-chr2-163658485-4	chr2	163658406	163658606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164053)	promoter-TSS (NM_001164053)	48.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	5.95447754578814	5.53070712528198	5.73340255502602	5.47714397867084	5.59537369247415	5.69858393212805	5.72820871658129	5.70481360971841	0.0142315980773602	0.958235704779892	0.985112862061151
Merged-chr2-170325425-4	chr2	170325329	170325529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30932.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	5.48780914111897	5.20557057550111	6.16595827048554	6.16128253849993	5.87473161461717	5.47250562769132	6.13414212972766	6.00811657378321	0.103943875110229	0.759926030149179	0.905851390428209
Merged-chr11-117109345-1	chr11	117109245	117109445	+	614.0	f0_balb.idr	Intergenic	Intergenic	-5827.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	3.53933615402693	3.43085299265402	3.16969873737967	3.12379782220252	3.16450913562235	3.28167616561923	3.15841868629471	2.97070274973837	-0.657885531420652	0.253876281739358	0.565167319006873
Merged-chr14-120275633-4	chr14	120275534	120275734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207515)	promoter-TSS (NM_207515)	-35.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	8.04037138025018	8.13364895822594	7.81339694785859	7.9415951146412	8.0584121547865	7.92678727518619	8.19016613351007	7.69350835572213	-0.00614140039404238	0.973038743345604	0.990282195228149
Merged-chr7-102417602-4	chr7	102417505	102417705	+	988.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 6 of 11)	intron (NM_009287, intron 6 of 11)	-24090.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	5.14581104774135	4.76431278942567	4.88218369113151	4.75567620204713	4.99028894236467	5.19325802984693	4.92975412932936	4.87893169226665	0.233615125096929	0.47444903150922	0.751665055506471
Merged-chr1-72104237-4	chr1	72104143	72104343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99048.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	6.10614006318347	6.41909878952707	6.71161000425541	6.44331199202236	6.21670255189502	5.97187145812179	6.56653012453972	5.86705585909916	-0.374659347115279	0.161312853279971	0.450029320380696
Merged-chr1-16093172-3	chr1	16093066	16093266	+	910.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001243238, exon 1 of 5)	5' UTR (NM_001243238, exon 1 of 5)	159.0	NM_001243238	75799.0	Mm.78557	NM_001243238	ENSMUSG00000067795	4930444P10Rik	-	RIKEN cDNA 4930444P10 gene	protein-coding	3.82046035784133	3.48250360060715	3.86925843954512	3.75300770618624	3.5415567701393	3.83825285488512	3.70372108427692	4.00121186498603	0.114101385216946	0.811827905019952	0.927276641228159
Merged-chr8-46852670-6	chr8	46852567	46852767	+	958.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112922.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	4.05972366957466	3.90134997510991	4.32311242770523	4.22168727157411	3.96284567650491	4.32451823383431	4.1357449457093	3.95697893065374	-0.10839937092653	0.799206912305382	0.922468780793149
Merged-chr10-25284632-4	chr10	25284537	25284737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 2 of 7)	intron (NM_018747, intron 2 of 7)	14526.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	6.73613534483037	6.61318740420985	6.78033946844239	7.13757120513279	6.72159517402092	6.52590802881531	6.67364085488577	6.81708727169821	-0.223952885534752	0.316992567954963	0.628905690750891
Merged-chr15-50698283-3	chr15	50698189	50698389	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	190760.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	5.94165535283091	5.97754051728301	5.98675551025799	5.75451176529507	6.04601751766802	5.90024189513115	6.09842222585743	6.00393037923652	0.17726466019374	0.461126080180507	0.742937471426379
Merged-chr18-40459120-1	chr18	40459020	40459220	+	701.0	f0_c57.idr	intron (NM_026135, intron 1 of 1)	intron (NM_026135, intron 1 of 1)	200759.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	2.46166781712283	2.54852633619776	2.46184138207891	2.61735007829625	3.22418685102135	2.93148132403637	3.1383531721698	2.88126512693727	2.47022448650982	0.0008943223884922	0.0123270668649276
Merged-chr18-10725545-4	chr18	10725436	10725636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144860)	promoter-TSS (NM_144860)	-89.0	NM_144860	225164.0	Mm.21500	NM_144860	ENSMUSG00000024294	Mib1	DIP-1|E430019M12Rik|Mib|mKIAA1323	mindbomb E3 ubiquitin protein ligase 1	protein-coding	8.85524170598796	8.95347648415838	8.9252778100301	8.99277994052471	8.82070642970279	8.91503908818122	9.09916338942462	8.8627656726918	-0.00953624673800431	0.947946675351935	0.981359015857754
Merged-chr11-62879367-4	chr11	62879245	62879445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356521)	promoter-TSS (NM_001356521)	-110.0	NM_001356520	67510.0	Mm.9806	NM_026210	ENSMUSG00000014177	Tvp23b	1810036I24Rik|Fam18b|Fam18b1	trans-golgi network vesicle protein 23B	protein-coding	7.70614141868493	7.93317796066682	7.37169500978904	7.53968106975097	7.85338332292539	8.05287608939962	7.84460006592011	7.56398912958374	0.242777640979788	0.225259699995805	0.533604905018683
Merged-chr13-52061639-4	chr13	52061532	52061732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35109.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	6.66243485929585	6.49176116372037	7.04363954407337	7.00565263051368	6.80247370587922	6.77633433767756	7.17174337881597	6.90285256899149	0.130246200439752	0.569228150734812	0.809360318990077
Merged-chr14-19778114-1	chr14	19778014	19778214	+	811.0	f0_balb.idr	exon (NM_008695, exon 5 of 21)	exon (NM_008695, exon 5 of 21)	26857.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	3.87776480825811	3.6347275272835	4.04886586709314	3.93585422137057	3.33339367526296	3.56454953611885	3.61239964383443	3.56789182531437	-1.16112738113497	0.0191056474594973	0.124091694545083
Merged-chr11-85525825-3	chr11	85525737	85525937	+	956.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	172673.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	4.32865792566919	4.10434348911064	3.7779630238559	3.96930189640367	4.00115499265531	3.89849319384946	3.76365293691146	4.16816900992853	-0.236458085888199	0.599063005585171	0.826146116839364
Merged-chr5-21372674-4	chr5	21372576	21372776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008013)	promoter-TSS (NM_008013)	3.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	6.3925414985558	6.03940190843842	6.01131547672031	6.54576554266326	6.41394870467143	6.68441827647873	6.46047768087423	6.11924616105042	0.223333328559588	0.38688492109121	0.687932705110785
Merged-chr3-27689597-4	chr3	27689496	27689696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	G-rich|Low_complexity|Low_complexity	20856.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	7.47725028651823	7.46167234427356	7.38099215245435	7.60250528639639	7.63664593196432	7.49594792749722	7.5230412240075	7.29202620550246	0.0106031408503207	0.953050360725422	0.983308033287352
Merged-chr4-84876570-2	chr4	84876470	84876670	+	909.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7739.0	NM_175275	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	3.40278421331147	3.23693667478391	3.20734238641503	3.96109587031302	3.53119125960385	3.51818277772506	3.88261709570599	3.6240845475096	0.43207408220876	0.465115798339726	0.745726377498291
Merged-chr6-98091770-4	chr6	98091672	98091872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99989.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	6.00213673083011	6.32691286255173	6.25355234931526	6.40354225162901	6.39347553637223	6.3106848309912	6.01769676916463	6.24908188894607	-0.018221213826424	0.938939516626772	0.977881364615113
Merged-chr8-108662959-3	chr8	108662856	108663056	+	945.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51688.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	4.05142314539286	3.84727437875744	4.26767826327506	4.3803517500403	3.9122867071221	4.22289932340437	3.72046376127466	3.79066493832056	-0.637640515265989	0.168170416016833	0.460179995450643
Merged-chr2-11705303-4	chr2	11705190	11705390	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133836)	promoter-TSS (NM_133836)	-3.0	NM_001271498	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	5.04530770691369	4.96576557845288	4.56068215719658	5.07703909453047	5.2619708400038	5.041789508952	5.26425818416687	5.23032757146122	0.502746729077159	0.11955424342341	0.382582591257021
Merged-chr5-77460487-4	chr5	77460373	77460573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5015.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	5.48099581809735	5.62050548246353	5.77692217575153	5.94608602246362	5.03207729276774	5.16256780664113	5.3392694274905	5.30014028549737	-0.925592552273728	0.00158665865078539	0.0195426156954929
Merged-chr17-28510629-4	chr17	28510545	28510745	+	976.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20216.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	5.75571199238002	5.56073624246024	4.88970137126547	4.9003561985969	5.86605699675093	5.52687020343803	5.29449796006621	5.08350153595635	0.272671723033858	0.467039152233693	0.746723417346348
Merged-chr2-170130671-3	chr2	170130572	170130772	+	930.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159683, intron 2 of 6)	CpG	548.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	3.94828294618767	4.10543132339025	3.8927132982645	4.00834102985083	4.65561550802212	4.45648931958484	4.17979471855181	4.19584084185356	0.996682101711679	0.0155358930914571	0.107539811187296
Merged-chr6-86525483-2	chr6	86525382	86525582	+	1000.0	f0_balb.idr|f0_c57.idr	exon (NM_011865, exon 1 of 1)	exon (NM_011865, exon 1 of 1)	707.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	4.72518474207715	4.88604164102555	5.54646405344167	5.11130638940886	5.03750729448087	5.29483731605344	5.28074160841189	5.74257304070156	0.469311543489105	0.189882800816211	0.48897703139117
Merged-chr11-83663742-4	chr11	83663629	83663829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013652, intron 2 of 2)	intron (NM_013652, intron 2 of 2)	1145.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	6.67821417861829	7.01567774971057	6.48561255342484	6.60777448730009	6.54113596927374	6.69690450591211	6.66015442842375	6.59753505163313	-0.129274419778494	0.556567501896177	0.802152757152044
Merged-chr2-181365992-3	chr2	181365911	181366111	+	986.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165991)	promoter-TSS (NM_001165991)	588.0	NM_001048148	229007.0	Mm.87720	NM_144894	ENSMUSG00000027582	Zgpat	1500006I01Rik|BC021513	zinc finger, CCCH-type with G patch domain	protein-coding	4.38225572460878	4.08499009875291	4.09976582541818	3.99186314469073	3.85844060044118	3.66127045998475	4.08160694197383	4.05108214561146	-0.583493602325577	0.191052590399896	0.490405060659004
Merged-chr11-22656777-4	chr11	22656706	22656906	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144523.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	4.92220831724539	5.185517140202	4.45453155168899	4.78713799293904	5.0419856281194	5.13158982080609	5.00150318093045	5.08688896712647	0.393814256548774	0.247504523176697	0.558653066598831
Merged-chr7-34196264-1	chr7	34196164	34196364	+	1000.0	f0_balb.idr	intron (NM_026549, intron 2 of 6)	CpG	406.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	5.65007470317545	5.5449483671637	6.12043752455645	5.92788310193775	5.41083560061116	5.25708099596371	5.51520685537738	5.86061033872577	-0.509091368032896	0.0874020899636259	0.322459895085463
Merged-chr1-173879026-1	chr1	173878926	173879126	+	602.5	f0_balb.idr	intron (NM_001170853, intron 2 of 9)	intron (NM_001170853, intron 2 of 9)	1161.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	3.1420790273126	3.27027059008355	3.03192306425207	2.98566672976292	2.73335666787219	2.9514565548222	2.77001460246069	2.9090648295862	-1.24227834911605	0.0480742474539864	0.226231727919412
Merged-chr14-76415550-9	chr14	76415433	76415633	+	939.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207652)	promoter-TSS (NM_207652)	-288.0	NM_207652	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	3.93124222287308	4.1604405715986	4.13262405809685	4.32197455846664	4.06315309388539	4.15928213207426	4.20359501694476	4.21979813360928	-0.000297344776717284	0.999422950382417	0.999731947458016
Merged-chr12-24975609-4	chr12	24975512	24975712	+	934.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081378, intron 1 of 31)	intron (NM_001081378, intron 1 of 31)	680.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	4.70347226351663	4.57393909108026	4.78251922044372	4.85542052696311	4.95097578067824	5.19382696638677	4.96759011542885	4.57427431618629	0.40064109923741	0.247875125545921	0.559028660727896
Merged-chr19-6297828-4	chr19	6297715	6297915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 4 of 4)	intron (NM_010119, intron 4 of 4)	-8642.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	8.85525030312771	9.03869048519672	8.97821648041653	8.69707533059046	8.74665110844463	8.97109709176741	8.88447791877284	8.47964216401403	-0.14099454541028	0.413066833207268	0.708030730647309
Merged-chr17-25006654-1	chr17	25006554	25006754	+	711.0	f0_balb.idr	intron (NM_020608, intron 2 of 20)	intron (NM_020608, intron 2 of 20)	8576.0	NM_020608	57354.0	Mm.328854	NM_020608	ENSMUSG00000038002	Cramp1l	5830477H08Rik|AI256853|AI790734|Cramp1|Tce4|mKIAA1426	cramped chromatin regulator homolog 1	protein-coding	2.74629932788949	3.05806473152796	2.8072026672099	2.92071085850216	2.28696952901758	2.49693813641141	2.6740290785861	2.54514528487364	-2.20775948299994	0.00524800167259926	0.049267674895007
Merged-chr11-94993470-4	chr11	94993365	94993565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172261, intron 1 of 9)	intron (NM_172261, intron 1 of 9)	2253.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	7.61293699379588	7.55156294830221	7.37309494966835	7.46954423983342	7.24386327155065	7.57066072688366	7.74201919430335	7.37816082351728	-0.0165463015519182	0.931344677299905	0.975279137937273
Merged-chr7-45515663-4	chr7	45515549	45515749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045555, intron 4 of 13)	intron (NM_001045555, intron 4 of 13)	1047.0	NM_001290998	56734.0	Mm.439742	NM_008807	ENSMUSG00000023467	Tulp2	Pdet	tubby-like protein 2	protein-coding	6.19628609165392	5.93662015610595	5.87103377712437	6.15348841147725	5.75991156996778	5.61094449453284	5.90875282917346	5.74477642847292	-0.467348343935778	0.0636710974050762	0.267978065408935
Merged-chr3-9753846-3	chr3	9753738	9753938	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 1 of 7)	intron (NM_053182, intron 1 of 7)	79841.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	3.91720271941884	3.67484746727176	3.82379923973986	4.1034714140315	3.54647902202003	3.40281231796019	3.8075968132732	3.77186778435192	-0.775514493936913	0.115151899304824	0.375495214395084
Merged-chr4-141016222-3	chr4	141016130	141016330	+	885.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008546)	TTS (NM_008546)	5593.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	4.59645422142515	4.32762385412441	4.40339788254151	4.56311548989182	4.34931519269334	4.19574848929191	4.05449492941639	4.48163274295706	-0.467334880863178	0.232516378445274	0.542116784085825
Merged-chr3-90514973-4	chr3	90514945	90515145	+	850.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011309)	promoter-TSS (NM_011309)	610.0	NM_009113	20196.0	Mm.6523	NM_009113	ENSMUSG00000042312	S100a13	-	S100 calcium binding protein A13	protein-coding	3.50653051481498	3.28008650295295	3.75801208699249	3.44559257536205	3.72564611420736	3.62295368751572	3.43745136156599	3.44851048648382	0.217183474325576	0.670162735402798	0.863913056210805
Merged-chr17-84850638-4	chr17	84850518	84850718	+	986.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-59832.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	4.7976513090417	5.14117687612739	5.14617861478297	5.04895486128648	5.00094470793084	4.93474836808342	4.92541228361118	5.01484833988126	-0.140532898382393	0.653926633879333	0.855291962163449
Merged-chr8-120736298-4	chr8	120736202	120736402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008320)	promoter-TSS (NM_008320)	-56.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	7.57668746114077	7.52843977669424	7.35623105890858	7.50137016010979	7.74498162920885	7.51256779553659	7.80204257102915	7.68261218618076	0.262683933703819	0.128293650599583	0.3985603070892
Merged-chr8-106059423-4	chr8	106059304	106059504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010901)	promoter-TSS (NM_010901)	-199.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	8.47985242372435	8.7895265227102	8.70748632998767	8.6092860693913	8.49127115517547	8.74210670935323	8.56232200284282	8.54459408913069	-0.0829207775392424	0.595339376966574	0.823889334925232
Merged-chr19-6046495-4	chr19	6046391	6046591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028769)	promoter-TSS (NM_028769)	-85.0	NM_028769	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	7.31723865923435	7.53890833064363	7.23212633519011	7.07789663535131	7.49425356189137	7.63351760158961	7.09148326689014	7.52402687375566	0.207658437155989	0.317951918136545	0.629807413063982
Merged-chr10-100032776-4	chr10	100032672	100032872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347156, intron 1 of 8)	intron (NM_001347156, intron 1 of 8)	16951.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	7.11723768385791	6.88217009615379	6.82294448035741	7.14669154398808	7.18000706426067	7.09738139910498	7.03622252150788	6.99349254810242	0.101048574872585	0.606697154242832	0.829593003785543
Merged-chr2-33131126-6	chr2	33131026	33131226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355200)	promoter-TSS (NM_001355200)	310.0	NM_001355201	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	7.64186633842592	8.09016226110664	7.61580537201124	7.51208492011053	8.39450433775317	8.30180095899468	8.32937556605388	8.13083296949451	0.723960852522833	0.000146795051331437	0.00280267554806301
Merged-chr12-69455767-4	chr12	69455662	69455862	+	961.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19788.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	5.07787067706404	4.84677260919155	4.91581266338534	5.19509999024886	4.53155412331625	4.59452598821958	4.92610865171091	4.87726961059482	-0.589016023143245	0.0866524927537309	0.321147274776108
Merged-chr16-52145016-4	chr16	52144900	52145100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 9 of 17)	intron (NM_001033238, intron 9 of 17)	113451.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	6.1742228422332	5.69352978994445	6.19377431909474	6.40237672973742	5.70631955391796	5.90850736783281	5.78003100101893	6.01179636286107	-0.480069115607741	0.0787421272830044	0.303647473434478
Merged-chr13-49216122-4	chr13	49216037	49216237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026738)	promoter-TSS (NM_026738)	-111.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	8.41117299415008	8.74351995883501	8.29776625660258	8.25624721134917	8.37947998198457	8.57439835586804	8.55300495130086	8.4880630223618	0.073997238323451	0.671150106240459	0.864507019889785
Merged-chr15-99260120-4	chr15	99260041	99260241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045627, intron 1 of 2)	intron (NR_045627, intron 1 of 2)	-8180.0	NM_016766	51812.0	Mm.383472	NM_016766	ENSMUSG00000037570	Mcrs1	C78274|ICP22BP|MSP58|P78	microspherule protein 1	protein-coding	6.18256684123601	6.20755005629845	5.52877290467297	5.90375906028527	6.1176989491662	5.92934763577354	5.64461428120963	5.74859503787403	-0.160837903650736	0.571114150828808	0.810368673587508
Merged-chr8-46732759-4	chr8	46732631	46732831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045750, intron 2 of 2)	intron (NR_045750, intron 2 of 2)	6784.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	5.97541554780767	6.2905361566699	5.88519635907045	6.01373575981596	6.02758666715517	5.77349906551296	5.92393156296556	6.05724479091723	-0.152360915300624	0.538921492019525	0.791872608076829
Merged-chr1-132007523-4	chr1	132007428	132007628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007923)	promoter-TSS (NM_007923)	-77.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	6.84658877174969	6.67053592253475	6.69169010885562	6.5782721007098	6.82808244683691	6.82214734035674	6.65761640862187	6.88230872838166	0.157386355950496	0.434575417623515	0.7238182012175
Merged-chr2-174330845-4	chr2	174330718	174330918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201616, intron 1 of 11)	CpG-8943	729.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	5.9983031134628	6.49643993824612	6.15432209886531	5.93260234442183	6.42700700331258	6.1304796666652	6.58563714146448	6.68467666608307	0.473871290671333	0.0644764379977489	0.269867598508865
Merged-chr17-5602160-4	chr17	5602066	5602266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	109566.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	7.59621637619301	6.42381699362578	6.88435454659467	7.60622514005807	6.62374771435002	6.11478676447593	6.68087824410417	6.28559111576156	-1.08768380481736	0.00042227998697662	0.00671825373111507
Merged-chr4-114997244-4	chr4	114997163	114997363	+	800.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2855.0	NM_001304559	20460.0	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	4.11712075696271	4.06555051388723	3.68876553245355	4.01033867269583	3.98095904800234	4.56948531612333	4.18673811920973	3.80753860894886	0.466188254648455	0.314721578072512	0.626722448680151
Merged-chr10-117844403-4	chr10	117844305	117844505	+	982.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	1569.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	4.85912198411444	5.84435440488329	5.16161365203648	5.30757425568603	5.32395393962604	5.37053208772519	5.37876583582089	5.08902274848348	-0.0965450663137853	0.778988854440223	0.913809930096951
Merged-chr11-35838551-4	chr11	35838428	35838628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_170779)	TTS (NM_170779)	-4000.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	6.32643709580291	6.61756249889326	5.84887092334593	6.13738784804456	6.51269235530102	6.32967688265636	6.31303165113507	6.28627833079863	0.159565902199218	0.530796360368625	0.786856644791047
Merged-chr4-141858774-4	chr4	141858665	141858865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025994, exon 4 of 4)	3' UTR (NM_025994, exon 4 of 4)	-12406.0	NM_001033875	76701.0	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	7.05254042366162	7.2867620756958	6.7534176989855	6.30288509765179	7.40608080330213	7.27837061150571	7.1113562610354	7.25018588133689	0.518633864413072	0.0405930832601858	0.203608160496785
Merged-chr7-43533194-4	chr7	43533077	43533277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021293)	promoter-TSS (NM_021293)	-6.0	NM_021293	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	7.33470381103557	7.38380934903598	7.74174335795635	7.7493032660782	7.36310508591952	7.41410148004229	7.6165434707552	7.80389673853854	-0.0197473513699107	0.922801255321096	0.971413012934631
Merged-chr5-43354581-4	chr5	43354554	43354754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119300.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	6.17765100317681	5.9245095774394	6.73970463492313	6.60551738146663	6.56360364511257	6.15577990048641	6.246473447665	6.54899198656616	-0.017025989502694	0.950325612658999	0.982264362614525
Merged-chr9-43306022-4	chr9	43305903	43306103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4760.0	NM_023655	72169.0	Mm.273277	NM_023655	ENSMUSG00000032013	Trim29	1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726	tripartite motif-containing 29	protein-coding	5.98010178550304	5.97995816421428	6.3612214801679	6.34624608586254	5.10802185533796	5.55083989883971	5.76978531569217	5.61198948959279	-1.08688608403226	0.000155583300246765	0.00294215295649959
Merged-chr9-5298260-2	chr9	5298160	5298360	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009807)	promoter-TSS (NM_009807)	-257.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	4.22564920219567	4.57609083957917	5.0442705639838	4.77919570330296	4.32067808642675	4.69323911833071	4.49653207110106	4.98206746879985	-0.106991581719577	0.794704258073314	0.920584812443453
Merged-chr11-54520481-4	chr11	54520387	54520587	+	723.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2358.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	3.29911150882945	3.50950085522058	3.69896263345124	3.56376610794775	3.46318258963928	3.71406204646515	3.77655750657317	3.59472596035017	0.349131046165188	0.480949580811539	0.756246789196702
Merged-chr4-123283124-3	chr4	123283047	123283247	+	851.1555789999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001356377, exon 1 of 14)	5' UTR (NM_001356377, exon 1 of 14)	236.0	NM_130881	230721.0	Mm.277091	NM_130881	ENSMUSG00000011257	Pabpc4	-	poly(A) binding protein, cytoplasmic 4	protein-coding	3.66409677867767	3.78299741442238	3.72442125356359	3.45559130411113	4.31431746455851	4.25226741872251	4.18870257843853	4.03363425269267	1.55761433596102	0.000330614917142586	0.00549575880132932
Merged-chr4-63385511-1	chr4	63385411	63385611	+	740.0	f0_balb.idr	intron (NM_001045514, intron 6 of 21)	intron (NM_001045514, intron 6 of 21)	12729.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	3.63359648753665	3.61475673530563	3.5838408074676	3.42572661017364	3.16096918988493	3.53515822791897	3.4633256225105	3.47499681138307	-0.519897845852624	0.315586474562585	0.627426670937105
Merged-chr2-31076547-4	chr2	31076456	31076656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	B3A|SINE|B2	19944.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	5.47016226425674	5.40771245060236	5.47110840002903	5.4614776306071	5.58559322009711	5.19233221134195	5.47077861959425	5.41101352149862	-0.033032319525602	0.905467159624895	0.964896278987056
Merged-chr18-53059279-4	chr18	53059163	53059363	+	970.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117029.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	4.79096148830456	4.77373992817994	5.32695996596148	5.41157498723795	5.10597390189686	5.31494438270197	5.79548278038518	5.43481132318238	0.559662507730071	0.117442866279465	0.37901420570491
Merged-chr9-62366890-1	chr9	62366790	62366990	+	542.0	f0_balb.idr	intron (NM_009672, intron 1 of 6)	intron (NM_009672, intron 1 of 6)	25547.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	2.73861323953672	2.58337828463321	2.73901129414987	2.75235090927826	2.16803063554922	2.36805433985864	2.6105667758569	2.34394406823402	-1.98343557386208	0.0157239464859234	0.108388028948436
Merged-chr6-56756360-4	chr6	56756228	56756428	+	868.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030235, intron 15 of 15)	intron (NM_030235, intron 15 of 15)	40885.0	NM_001362211	210973.0	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	4.3731215967114	4.34655901824701	4.50242979265919	5.02683771194796	4.12846269686106	4.25385976037325	4.35431339988997	4.75664520650321	-0.496682215227711	0.25254462352228	0.563825160206146
Merged-chr5-3420328-4	chr5	3420210	3420410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 3 of 7)	intron (NM_009873, intron 3 of 7)	76417.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	5.87734601676552	5.90720829945898	6.12303648094473	6.15253028539281	6.05413728256761	5.98076779030334	6.37792011325903	6.34028745868021	0.257578935490109	0.296006277734439	0.607853870026531
Merged-chr5-124025316-4	chr5	124025241	124025441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	6919.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	6.49820463360619	6.72368735295755	6.77331291265412	6.57776046425035	6.68448527048463	6.23622979174032	6.66887553336537	6.6083965477855	-0.107882675811983	0.624124915455579	0.839276569130445
Merged-chr6-13684252-3	chr6	13684133	13684333	+	737.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-6267.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	3.48207748952827	3.48601098300179	3.53404072131741	3.46629620373334	3.36018376680916	3.3636263969363	3.30245657315052	3.37086421200384	-0.494764883167846	0.327177398214727	0.638696726112831
Merged-chr7-118534875-2	chr7	118534775	118534975	+	585.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172476)	TTS (NM_172476)	-1519.0	NM_009940	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	2.70926765364969	2.68991889397179	2.63889385140139	2.5528786299156	2.9214594256634	2.88518338362835	2.94770722016441	3.11790974154416	1.53953236817565	0.0123033973034065	0.0914740169912025
Merged-chr11-69070796-4	chr11	69070668	69070868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025838)	promoter-TSS (NM_025838)	-41.0	NM_025838	66910.0	Mm.33964	NM_025838	ENSMUSG00000020895	Tmem107	1110004B13Rik|2810049P21Rik	transmembrane protein 107	protein-coding	6.16271757964197	6.23865667018985	5.963775267656	5.71470821227763	6.48403877004826	6.74009917538607	6.21142316746498	6.64730649566609	0.771731658072157	0.00235786569638314	0.0265470614367061
Merged-chr6-125351497-4	chr6	125351405	125351605	+	993.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	1782.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	5.03432512591825	4.94106713581366	4.83014964380647	5.09015567286681	6.05044906168552	5.39107578814347	6.02273974924871	5.30494708721571	1.33934396286699	4.91417611333613e-05	0.00111503392276427
Merged-chr11-70021596-4	chr11	70021506	70021706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007864, intron 1 of 19)	CpG	3001.0	NM_007864	13385.0	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs large MAGUK scaffold protein 4	protein-coding	7.16568859348201	7.11542640754318	6.77025382563276	6.77066675110174	7.37617504864031	7.67938899587902	7.30959546907998	7.13902220094425	0.582516065949402	0.00651437157302541	0.0577011515923812
Merged-chr10-44686203-4	chr10	44686090	44686290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-227442.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	5.22431436091258	5.68469961565421	5.86362207800497	6.01668515701513	5.77511304792745	5.44081226464552	5.87620972771273	5.38975847909867	-0.16798834920229	0.589709588527905	0.820539533210917
Merged-chr10-96188338-4	chr10	96188278	96188478	+	923.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37829.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	4.2876747673455	4.2447330370294	3.85423823198757	4.03581573061957	4.16354130984677	4.41580311564167	4.09524267874644	3.85217978735833	0.0824834687339214	0.849328920378896	0.943120119372541
Merged-chr8-87472663-3	chr8	87472568	87472768	+	861.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019626)	promoter-TSS (NM_019626)	-76.0	NM_019626	12404.0	Mm.4880	NM_019626	ENSMUSG00000031654	Cbln1	AI323299	cerebellin 1 precursor protein	protein-coding	3.94162102720106	3.69713864422921	3.98534480311339	4.03065409552193	3.49420194869915	3.37991238319263	3.63292361269986	3.64512820207774	-1.19051258843176	0.0148864544952102	0.104260842715199
Merged-chr4-149737462-3	chr4	149737372	149737572	+	989.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284270, intron 1 of 10)	intron (NM_001284270, intron 1 of 10)	298.0	NM_001284273	230917.0	Mm.266704	NM_177672	ENSMUSG00000044700	Tmem201	AV028368|D4Ertd429e|Net5|Samp1	transmembrane protein 201	protein-coding	4.5720823281303	4.33892530829971	4.49653844979012	4.38094915902534	4.29282643408435	4.31307615020575	4.55113181692563	4.18400513551124	-0.241709838052631	0.525388989704064	0.783252235625498
Merged-chr16-16073526-4	chr16	16073419	16073619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 5 of 18)	intron (NM_001355731, intron 5 of 18)	73332.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	7.58262196531846	7.63992120597608	7.442976311715	7.81322168304946	7.72414953312339	7.75226693740926	7.59020065332911	7.63089560578449	0.0510458682370247	0.772931893372951	0.911065614095637
Merged-chr12-52302397-4	chr12	52302284	52302484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 8 of 10)	intron (NM_029760, intron 8 of 10)	178225.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	5.76061397631974	5.28023163274226	6.11859168585752	6.36639555570274	5.85121926237373	5.80510727889496	6.39370806170344	5.88014169358618	0.0762064492217817	0.81815748466867	0.930222215852522
Merged-chr7-88202169-4	chr7	88202071	88202271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75914.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.30006206388238	6.3493694323495	6.72110917615145	6.77087732430511	6.21590738599153	6.13040608953785	6.74027467993488	6.25775147883455	-0.299722163071328	0.243032589944702	0.553987597504451
Merged-chr11-20151494-4	chr11	20151406	20151606	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1-int|LTR|ERVL-MaLR	-38555.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	4.59159380295299	4.52415166821676	4.02542325822805	4.34906498831424	4.69800196050815	4.42070596468979	4.45155895327859	4.83173960387065	0.508540395084868	0.192125132816003	0.49168643543344
Merged-chr5-21035883-4	chr5	21035784	21035984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356590)	promoter-TSS (NM_001356590)	-637.0	NM_001356590	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	7.30404621663358	7.10408704094879	7.1459078849614	7.25038110601103	6.99018504742465	7.00236219306861	7.15439586713943	6.77517043136634	-0.298396261818531	0.12050712311215	0.384300023118268
Merged-chr1-97663050-4	chr1	97662947	97663147	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1029.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	5.64699144440899	5.26734222494528	5.62464227051982	5.70479798392838	5.26445270193529	5.01484040660134	5.18361689734986	4.87158753581522	-0.855961983401189	0.00548891951187533	0.0508983587722478
Merged-chr7-67951012-4	chr7	67950917	67951117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1240.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	5.572365142772	5.6925194569626	5.93859894496192	5.63091220894385	5.13819461466026	5.38729665627726	5.18228699277077	5.78761489836777	-0.548900769330146	0.0695023192106519	0.281966690173553
Merged-chr13-60738649-4	chr13	60738541	60738741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 18 of 26)	intron (NM_134062, intron 18 of 26)	47723.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	5.82427354777277	5.96114076917372	5.69589508399179	5.942640312123	5.94772171465342	6.00154331985278	6.13639162111895	6.20048585701869	0.317162764027347	0.192376784578674	0.491965794505647
Merged-chr2-121955942-4	chr2	121955848	121956048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290992)	promoter-TSS (NM_001290992)	-53.0	NM_001290992	329506.0	Mm.249405	NM_212450	ENSMUSG00000033411	Ctdspl2	D2Ertd485e|SCP4	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	protein-coding	7.82967527681689	7.70585881116675	7.56352498914101	7.82116335347698	7.96794433367427	7.856720467375	8.20465847357586	7.6307175619461	0.254121543330142	0.177691743032993	0.473241965060196
Merged-chr14-120318459-2	chr14	120318359	120318559	+	707.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 1 of 8)	intron (NM_001360376, intron 1 of 8)	12007.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	3.06504117733242	3.20766175840424	3.37909028900545	3.47983694250296	3.24972529618889	3.7025072870888	3.30957686883322	3.43180777482611	0.443623822607454	0.426859322619622	0.718216237820114
Merged-chr19-11336161-4	chr19	11336108	11336308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025610)	promoter-TSS (NM_001025610)	-62.0	NM_027836	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	6.55409416480572	6.24400925679763	6.15976641937468	5.87166487811941	6.01554054206757	6.50453656147202	6.10793583902915	6.15535448483731	-0.0203553618875915	0.93924663099402	0.97803610432915
Merged-chr19-11121323-5	chr19	11121213	11121413	+	836.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027058, intron 1 of 6)	intron (NM_027058, intron 1 of 6)	9565.0	NM_027058	69369.0	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	3.57340715831267	3.42923479933285	3.76140301668286	2.99572709792579	3.24241525388241	3.53052189531553	3.08237217819814	3.57175119242993	-0.325309072260339	0.586735767312459	0.818855440601026
Merged-chr2-73455793-4	chr2	73455690	73455890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-1901.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	6.3343053565497	6.38577166991242	6.77327197072718	7.03297369785541	6.39534988925247	6.37110368330144	6.60962881354683	6.86071474132604	-0.154424321054127	0.553999138870007	0.800500121223594
Merged-chr11-93856501-2	chr11	93856401	93856601	+	752.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29265.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	2.99680725324848	3.04924486562797	2.79758444643881	2.7228394755768	3.21083540363136	3.22724706856273	2.98641712364283	3.05592274589871	0.986113699218624	0.0962679536954512	0.340028616320391
Merged-chr2-71336501-4	chr2	71336401	71336601	+	837.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 3 of 17)	intron (NM_172436, intron 3 of 17)	31053.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	4.11407522578987	4.30903761033743	4.06709342701069	4.23446643198364	3.8567322881436	4.14107238616306	4.00103606767131	4.24497417171446	-0.336010302509035	0.421355103661308	0.713975936713839
Merged-chr2-90580580-4	chr2	90580502	90580702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008982)	promoter-TSS (NM_008982)	45.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	7.04989666852081	7.19805293753192	7.25941277433731	6.70874854283811	7.41133497094643	7.88730041386993	7.2952881363685	6.96832366943611	0.499874204855592	0.0432675624612347	0.211641891107403
Merged-chr4-152008890-4	chr4	152008800	152009000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033352)	promoter-TSS (NM_001033352)	9.0	NM_001033352	242785.0	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	8.88034619878973	9.15359579650547	9.11562529925219	8.92950487668837	8.67624999373507	9.00470568610925	8.93422693252161	8.64943064053754	-0.250134223641881	0.125464495500462	0.39323810326849
Merged-chr17-46891256-3	chr17	46891105	46891305	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178385, exon 1 of 1)	exon (NM_178385, exon 1 of 1)	584.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	3.69698755006412	3.55854082151785	3.8494911436534	3.33908155532113	3.8049982925616	3.58052303740875	3.83252906913305	4.10502904320439	0.701206637250039	0.155354096020572	0.440979076070846
Merged-chr1-131975768-4	chr1	131975650	131975850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145977, intron 1 of 4)	intron (NM_145977, intron 1 of 4)	5141.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	7.54442145075829	6.90677996513486	7.80283904753204	7.74023436753746	7.20340224199	6.64270397645823	7.44652134349043	7.31347294665843	-0.479706597515418	0.0672878143521772	0.276760550559495
Merged-chr15-86182786-4	chr15	86182682	86182882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-2946.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	5.66881989178341	5.57243159686235	6.21671389347639	6.24712971331537	5.76031613421976	5.9261180730821	5.66809853049685	6.13929762992909	-0.146495597669171	0.620070420686849	0.837050380709854
Merged-chr2-91928049-4	chr2	91927957	91928157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007699, exon 2 of 2)	exon (NM_007699, exon 2 of 2)	3645.0	NM_001291481	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	5.86987086211079	5.99432061961619	5.80040464155695	5.96442507376994	5.66746670740532	5.73944502436984	5.77104316579434	5.91156818924966	-0.236948366530783	0.338801284303596	0.648145150521291
Merged-chr1-152560977-4	chr1	152560878	152561078	+	835.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 4 of 17)	intron (NM_016846, intron 4 of 17)	64239.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.01609442556936	4.6436664662689	3.96224158583615	3.76217554548245	4.51339217539334	4.63330714702424	4.10145542986742	4.01434168909879	0.490232547508143	0.309465181820779	0.621716685769721
Merged-chr12-21111699-3	chr12	21111609	21111809	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135192)	promoter-TSS (NM_001135192)	-47.0	NM_001004364	211914.0	Mm.358946	NM_001004364	ENSMUSG00000052632	Asap2	6530401G17Rik|Ddef2|Gm1523|Gm592|PAG3|PAP	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding	5.16938191592876	4.8744960393482	5.08651075010738	5.15970897266002	4.08991535316813	4.22004410807659	4.57725975046513	4.50813548804466	-1.58534656239075	2.31345024782144e-05	0.000579616596936579
Merged-chr10-12698091-3	chr10	12697985	12698185	+	765.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011682, exon 24 of 74)	exon (NM_011682, exon 24 of 74)	163650.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	3.07432726467376	3.41321617209391	3.22503403818722	3.39777820923649	4.00176050756382	3.60385965624787	3.99372654720818	3.92987129897675	1.88328220568318	0.000545634292005481	0.0082774303645904
Merged-chr18-36019068-3	chr18	36018967	36019167	+	807.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167891, intron 9 of 9)	intron (NM_001167891, intron 9 of 9)	54237.0	NR_110349	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	3.50759655829213	3.28411620854688	3.45163179475495	3.47514735238219	3.49200773128898	3.67837916159952	3.54791464467444	3.79858096820835	0.643894367098436	0.191338533310102	0.490749692363786
Merged-chr15-98167778-4	chr15	98167694	98167894	+	780.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177716)	promoter-TSS (NM_177716)	-12.0	NM_177716	239650.0	Mm.54140	NM_177716	ENSMUSG00000029875	Ccdc184	5630400A08|AI836003	coiled-coil domain containing 184	protein-coding	4.01152576323198	4.45583939230144	3.72812879499608	3.67509307035194	4.51033883019972	4.02966782066537	4.18320908800141	4.32561906632579	0.696505289555565	0.141463062611907	0.418505327384298
Merged-chr16-70313495-2	chr16	70313395	70313595	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028803)	promoter-TSS (NM_028803)	-454.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	3.34256259152521	3.61757998056178	3.28305995506507	3.30151829745753	3.0502711062713	3.5157160533644	3.38697154793666	3.55625688107062	-0.0208739200544548	0.969802873623217	0.989095984799937
Merged-chr7-4309836-3	chr7	4309729	4309929	+	732.861084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	-27895.0	NM_010746	17086.0	Mm.240231	NM_010746	ENSMUSG00000062524	Ncr1	Ly94|NKp46	natural cytotoxicity triggering receptor 1	protein-coding	2.58252494436934	2.52062627854772	2.58275242552454	2.17526532367154	3.50268541066927	3.28570970806991	3.3655849335777	3.76967508466085	7.41308684644826	1.57043400031396e-13	1.97844109218314e-11
Merged-chr1-55552630-4	chr1	55552430	55552630	+	778.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	L1_Mus2|LINE|L1	146584.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	3.38142633405743	3.41978994081354	3.38192870239474	2.7587501451109	3.24480054435827	3.32890093533592	3.14222777096785	3.02151128888007	-0.264538429264375	0.671143446012824	0.864507019889785
Merged-chr9-99009751-4	chr9	99009644	99009844	+	846.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080776, intron 6 of 7)	intron (NM_001080776, intron 6 of 7)	23371.0	NM_001122851	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	3.58126474579565	3.4528847407989	3.58174842899635	3.3943186499877	4.02895359597727	3.5816371396344	3.5677567477344	3.87616881200783	0.904902808102373	0.06262527706279	0.265128447989789
Merged-chr10-127070359-4	chr10	127070261	127070461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025982)	promoter-TSS (NM_025982)	-100.0	NM_025982	67125.0	Mm.35650	NM_025982	ENSMUSG00000006736	Tspan31	2700085A14Rik|AW742554|Sas	tetraspanin 31	protein-coding	6.96661731097649	7.00076225176285	6.66019022589439	6.80386058409136	6.93700793494324	6.97183419210774	6.92018130124981	6.50425668654685	-0.0199358234101332	0.925940294575129	0.972707719010402
Merged-chr5-12161417-4	chr5	12161311	12161511	+	958.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-221755.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	4.65832842113709	4.19235933753768	4.27263667354605	4.80402652684279	4.67230347489979	4.29648612149448	4.90044746470251	4.49855427275583	0.20246554585399	0.62408884202906	0.839275735925487
Merged-chr7-35234899-4	chr7	35234805	35235005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19560.0	NM_001024707	435965.0	Mm.333783	NM_001024707	ENSMUSG00000001802	Lrp3	-	low density lipoprotein receptor-related protein 3	protein-coding	6.75576470750985	6.80219171090293	7.1900655316066	6.83368270537857	7.06344988130808	6.99379454039335	7.25691601329554	7.20636639194172	0.320928367893318	0.113885221822639	0.37323392875802
Merged-chr2-145391835-3	chr2	145391725	145391925	+	710.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053195, intron 2 of 16)	A-rich|Low_complexity|Low_complexity	149214.0	NM_053195	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	3.40929125521957	3.3356882855511	3.40974936562076	3.65023054414257	3.10231405028542	3.13569552903954	3.55097021860946	3.56414978863962	-0.3837539188475	0.493729643601095	0.764438087754564
Merged-chr10-63309182-4	chr10	63309094	63309294	+	896.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359484, intron 17 of 22)	intron (NM_001359484, intron 17 of 22)	29841.0	NM_019812	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	4.24113900946996	4.44841005204268	3.81868384905132	4.02806992506843	4.42474845463772	4.32249938711567	4.26694886066764	4.4470267205665	0.530081853599917	0.2000882536678	0.502047441054017
Merged-chr19-42147316-4	chr19	42147212	42147412	+	844.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183195)	promoter-TSS (NM_183195)	-77.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	3.93601123002302	3.78026300679358	4.61065329974343	4.10104397250572	3.8226018179909	3.65418593477286	3.86972158589407	3.59804952714434	-1.10912709110913	0.0264212472640746	0.154150652377833
Merged-chr2-91054045-4	chr2	91053987	91054187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008948)	promoter-TSS (NM_008948)	71.0	NM_008948	19182.0	Mm.289832	NM_008948	ENSMUSG00000002102	Psmc3	TBP-1	proteasome (prosome, macropain) 26S subunit, ATPase 3	protein-coding	6.8666714549548	6.88967026856387	6.89351120284121	6.52397272694656	6.58504225489112	6.52380412301273	6.63802572377271	6.55664221158133	-0.302353309205318	0.158914639946084	0.446094511738734
Merged-chr3-36862211-4	chr3	36862120	36862320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172679)	promoter-TSS (NM_172679)	-886.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	5.54197727426656	5.31354805236299	5.4284176064363	5.52972395180827	5.70650639036295	5.63338760531814	5.69287575998748	5.91352578201906	0.473795368619586	0.0740068266609133	0.293133812275214
Merged-chr5-125307797-4	chr5	125307729	125307929	+	904.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	33265.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	4.18809237586218	4.02402848519204	4.56331821030552	4.38804472012248	4.31827070565212	4.15969135839738	4.38999449820437	4.48619679355596	0.0836034734344302	0.835515335044194	0.937454027224746
Merged-chr7-84611761-4	chr7	84611643	84611843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5801.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	5.39939487642573	5.03395187529462	5.67171171106383	5.97152489405025	5.62601865364218	5.23803494739265	5.56789732706098	5.76164206024775	-0.0294533938269836	0.929986363222619	0.974727857709636
Merged-chr5-114926964-4	chr5	114926867	114927067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359946, intron 1 of 4)	intron (NM_001359946, intron 1 of 4)	3727.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	6.62789246632848	7.3600151121388	6.84786860424583	7.10432798709005	6.48650446100746	6.75794855220429	6.33167572878337	6.45416864382751	-0.721704950613264	0.00274576664813407	0.0297928238182218
Merged-chr12-76376896-4	chr12	76376789	76376989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	6623.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	5.67915846501205	5.67930437733269	5.70612020170844	5.81714814010086	5.68682924641602	5.88158230808803	6.08752865642902	5.80087506807988	0.221346783641594	0.38819677941609	0.688886817059235
Merged-chr19-37515083-1	chr19	37514983	37515183	+	675.0	f0_balb.idr	Intergenic	Intergenic	-35335.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	3.16282760462047	3.11242813967802	3.48396025770068	3.33278789567764	2.90963294440561	3.64162463191021	3.15205220905393	2.96764137102222	-0.308197679388901	0.622997758254995	0.838870217449818
Merged-chr10-94576484-2	chr10	94576384	94576584	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177026, intron 1 of 3)	intron (NM_177026, intron 1 of 3)	221.0	NM_177026	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	3.48161374467083	3.82447392030662	3.6571890873961	4.03812024373317	3.8142570372958	3.59671758021096	3.64313390886351	3.85672118816323	-0.142540734240812	0.773676769848579	0.91155113636224
Merged-chr8-35567473-4	chr8	35567367	35567567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20331.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	7.26589995107268	7.10483286836901	7.50006034442152	7.57459536467138	6.1432044749296	6.45012469661226	6.35915451534115	6.34755722491088	-1.5002152443797	5.671614080938e-12	5.36834865248784e-10
Merged-chr13-113572207-4	chr13	113572108	113572308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46356.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	5.60123559516545	5.73333447253826	5.29376705523532	5.77721317813443	6.04560400919903	5.77824753248244	5.84286241647708	5.80047584951645	0.406330201721907	0.132954709107344	0.406105758986762
Merged-chr19-61140856-4	chr19	61140766	61140966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131953)	promoter-TSS (NR_131953)	-26.0	NR_131954	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	7.79355703722648	7.85301163088862	7.59578258439293	7.78004608659123	7.64595566817913	7.86836542149249	7.97405887211778	7.62602105523258	0.0284543683801107	0.872348267013324	0.952024737008678
Merged-chr1-176818913-4	chr1	176818812	176819012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 1 of 18)	intron (NM_001357390, intron 1 of 18)	4252.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	5.86624232420665	5.99128122432684	5.8206593578977	5.6470829338358	5.82714313570592	5.81907230080809	5.88208383942744	5.79258079261065	0.00929431882630106	0.97054255622987	0.989436241028349
Merged-chr6-116697598-2	chr6	116697498	116697698	+	927.5833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_178768, intron 3 of 4)	intron (NM_178768, intron 3 of 4)	19160.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	3.09701477427179	3.0475395488439	3.03389283244125	2.8024804942971	3.27879863876022	3.20954940971755	3.14599259873167	3.46938265685565	1.16496103507273	0.0390425621393321	0.198557482889077
Merged-chr3-84345150-4	chr3	84345050	84345250	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34771.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	5.47254650826081	5.2962794710799	5.3552753476895	5.67134422282038	5.48932963420283	5.46895280022196	5.96552285557998	5.28816901002826	0.185213951098272	0.54287415844244	0.794008953350891
Merged-chr4-126255641-4	chr4	126255552	126255752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	667.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	4.94384106618343	5.45835435834968	5.09162692966637	4.66818914226797	5.46176207645348	5.36684835785527	5.22835767014452	5.52444393585992	0.627005843668358	0.060146398154757	0.258894382218507
Merged-chr8-60968710-4	chr8	60968605	60968805	+	918.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007711, intron 1 of 11)	Lx8|LINE|L1	-13906.0	NM_173876	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	4.30744111496234	4.71168057928624	4.78465582024025	4.63043127288731	4.48781388669498	4.16904674962284	4.65888880686863	4.35264618512103	-0.422702028513306	0.273723902059621	0.585403329869051
Merged-chr13-51115950-4	chr13	51115833	51116033	+	956.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283029, intron 1 of 5)	intron (NM_001283029, intron 1 of 5)	14386.0	NM_001283029	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	4.45807210320669	4.81068206686316	4.63197287507434	4.36023651142711	4.88669267950942	4.5906282126968	4.9282355898622	4.88483699947097	0.568283240333885	0.109469111219858	0.365263113300955
Merged-chr17-56159927-4	chr17	56159871	56160071	+	837.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2520.0	NM_025566	66443.0	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	3.81995563233707	4.27886832279016	3.820461961846	3.79511212900363	4.26259012544149	4.25329012200805	4.39043450083005	3.92869732954341	0.72260913340618	0.101731500788917	0.350047264556928
Merged-chr4-8917385-4	chr4	8917274	8917474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	166050.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	7.81136251235645	7.78954917184264	8.06426910891126	7.97812599475892	8.60620895783604	8.75263128415318	8.56992710673645	8.42258696789261	0.858166868716273	1.82778416283359e-07	7.43852766874396e-06
Merged-chr15-96776844-4	chr15	96776728	96776928	+	807.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77100.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	3.5360954450476	3.3547608385098	3.81134962200855	3.473123679074	3.39039095568221	3.15533499513647	3.47021238417606	3.18429123193105	-0.830415102043991	0.129876548252601	0.401176996605992
Merged-chr1-131482464-3	chr1	131482368	131482568	+	654.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	44893.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	3.33316769704763	3.52969763894513	3.00719014821241	3.31825496138137	3.56837821208422	3.38671671553026	3.53121251470734	3.27277042442464	0.469530220613909	0.391529116847674	0.691279263407274
Merged-chr6-52012142-3	chr6	52012031	52012231	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018773, intron 1 of 12)	intron (NM_018773, intron 1 of 12)	418.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	4.99500339534136	5.27694491259808	5.13732369618487	5.27768516220884	5.3558521561998	5.43770095917548	5.23876480720886	5.19908150189941	0.225406460966212	0.443174279763088	0.729779110682633
Merged-chr12-78791493-3	chr12	78791323	78791523	+	894.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019579, intron 1 of 14)	intron (NM_019579, intron 1 of 14)	42476.0	NM_019579	56217.0	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	3.4354190539077	3.41580343255559	3.37704664235448	3.81267468091625	3.38715468942092	3.66167171475512	3.47866832015176	3.49024310347096	-0.119749810061098	0.819507198554482	0.930894367972767
Merged-chr7-16783472-3	chr7	16783372	16783572	+	782.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009201, intron 1 of 8)	intron (NM_009201, intron 1 of 8)	2126.0	NM_009201	20514.0	Mm.1056	NM_009201	ENSMUSG00000001918	Slc1a5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding	3.78738448072743	3.67383864873134	3.7424834399303	3.61242257669535	3.39964948783523	3.47682943863053	3.41338233730422	3.48198248739538	-0.867943578844003	0.0781657700008911	0.302437045599886
Merged-chr14-23839852-3	chr14	23839757	23839957	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253364, intron 1 of 27)	intron (NM_001253364, intron 1 of 27)	164348.0	NM_001253375	16531.0	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	3.45210176657697	3.61090132642575	4.30904092510792	4.30678110926689	3.50179009704335	3.69972267624327	3.88697227903965	3.63825784477958	-0.848223208818768	0.122153771425295	0.387327089801111
Merged-chr17-21566399-4	chr17	21566294	21566494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357347)	promoter-TSS (NM_001357347)	-584.0	NM_001002008	381066.0	Mm.441097	NM_001002008	ENSMUSG00000067931	Zfp948	-	zinc finger protein 948	protein-coding	6.11028852172598	6.34567909386554	6.15810011942333	6.20878787734487	7.43918570110872	7.3637536926187	7.01170226979599	7.03110760421605	1.44286759474051	2.801158335923e-11	2.34293359803365e-09
Merged-chr5-113812865-4	chr5	113812765	113812965	+	950.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-12513.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	4.61487817300913	4.99291180277131	4.92935388344741	4.66310973504503	4.90224418164637	4.91818176978382	5.1548543001098	4.99368727539053	0.38435114175786	0.244119529372296	0.555192606359545
Merged-chr1-157380925-4	chr1	157380832	157381032	+	961.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177644, intron 1 of 17)	intron (NM_177644, intron 1 of 17)	-31420.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	5.79390951896914	5.81838619030421	5.85759859092483	6.04347145583796	4.8328829902507	4.75700904734212	4.95912399473602	5.05784642771248	-1.78739007837728	1.60248735957849e-09	9.92719301718338e-08
Merged-chr2-129633484-4	chr2	129633382	129633582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	38020.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	8.30865537626655	8.1560431035219	8.49408155818627	8.16288659667795	8.00475430501651	8.43137392311611	8.26553643005039	8.27670955786679	-0.0442717244352739	0.801067338497502	0.923337043240231
Merged-chr10-63023301-3	chr10	63023194	63023394	+	986.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079824, intron 1 of 9)	CpG	555.0	NM_001079824	432467.0	Mm.274784	NM_001079824	ENSMUSG00000020069	Hnrnph3	AA693301|AI666703|Hnrph3	heterogeneous nuclear ribonucleoprotein H3	protein-coding	4.63080614637306	4.43246084816421	4.67018160812502	4.44868773002485	4.8012804855882	4.5017424526359	4.64821028256002	4.844039340196	0.374977055297201	0.286391223521755	0.598054698348964
Merged-chr1-124072797-2	chr1	124072697	124072897	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27238.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	3.58969230420036	3.50383920348226	3.29500222406041	3.91918419641023	3.42723128020805	3.65191637592398	3.62691443618555	3.5343360584077	-0.173873938780163	0.742300240903652	0.898494026733066
Merged-chr7-83724737-4	chr7	83724607	83724807	+	836.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 1 of 18)	intron (NM_001360088, intron 1 of 18)	7691.0	NM_001360087	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	3.3725301700944	3.74263573507804	3.69802180012317	3.1008517850698	3.7372949173856	3.66359044791044	3.29872667953585	3.43124138235004	0.156511023576268	0.780366645597278	0.914468274591605
Merged-chr19-55227891-4	chr19	55227811	55228011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 7 of 20)	intron (NM_001081076, intron 7 of 20)	13325.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	5.81458938207788	5.62931263391051	6.01238119965507	5.77986529049013	5.99409995633532	5.73035332150108	5.89874681853209	5.68719108389716	0.0527370287062433	0.837950806538361	0.938474063450959
Merged-chr15-36173517-2	chr15	36173417	36173617	+	921.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023127)	promoter-TSS (NM_023127)	-493.0	NM_023127	17749.0	Mm.27375	NM_023127	ENSMUSG00000045996	Polr2k	ABC10-alpha|MafY|Mt1a|RPABC4|RPB10alpha|RPB12|RPB7.0	polymerase (RNA) II (DNA directed) polypeptide K	protein-coding	3.98386028122301	4.11163318393083	4.21464851511643	4.03344760647506	4.06549106871147	4.25217511493952	3.86435045965953	4.03150961273601	-0.0681849267801641	0.870327437598479	0.951342292562219
Merged-chr15-64261791-4	chr15	64261685	64261885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	50888.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	5.4020017730387	5.48121810701153	5.28212683617678	5.61484058462202	5.38539861015141	5.36002792744054	5.45901447579615	5.27850531072735	-0.164528255279194	0.559202658509484	0.803643367386073
Merged-chr17-31564824-3	chr17	31564756	31564956	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016670)	promoter-TSS (NM_016670)	83.0	NM_016670	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	7.60982179750679	7.67535051576974	7.4045983522728	7.37861323606961	7.78146982987656	7.82252215803201	7.93776407833385	7.31509348848954	0.285127706911289	0.155512839715356	0.441111358017826
Merged-chr2-90745396-4	chr2	90745259	90745459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018828)	promoter-TSS (NM_018828)	-11.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	8.80853129855759	8.54952851392636	8.37619325146381	8.40037193851349	8.57014748720151	8.91584100149496	8.61713330039629	8.7238760359666	0.212166979168911	0.220476910847834	0.528430400607381
Merged-chr10-94090249-3	chr10	94090138	94090338	+	997.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 5 of 20)	intron (NM_053072, intron 5 of 20)	54237.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	3.69891211523301	3.31529003067579	3.69941735944548	3.26621641177514	4.27629952342945	4.5956735707034	4.54001526823459	4.59329049595753	2.81873643689853	7.23697911383522e-10	4.78292420003414e-08
Merged-chr19-48063500-4	chr19	48063408	48063608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125796.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	5.23453711922044	5.01731705457081	6.04280880090461	6.29277157349872	4.19138965781031	4.61837413483888	5.10913570169477	5.43936744147204	-1.44152377566202	0.0454240647744701	0.218314618945443
Merged-chr12-32765863-4	chr12	32765747	32765947	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54488.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	4.87086869517391	4.69290580920121	5.14274699362778	5.00371599235909	5.13613322421026	4.75779185886984	5.17636312492686	5.1692848531065	0.264028783917797	0.42167457571468	0.714117883054847
Merged-chr3-81052530-4	chr3	81052441	81052641	+	941.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	16125.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	5.11799175807161	5.01825739191955	5.23539670707264	5.05380383819518	4.99241024224901	4.94563790339167	4.66504935100611	4.54851649881462	-0.583725285558793	0.0809310631717429	0.308663781037426
Merged-chr11-54879587-4	chr11	54879481	54879681	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13198.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	5.11630395296881	5.13828533135949	4.85742056713184	5.15804208923298	5.29800064109236	5.41779960273274	5.21902166379645	5.38466462548752	0.454339978009361	0.12469121172416	0.392057414935683
Merged-chr10-81244786-4	chr10	81244695	81244895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034895, intron 8 of 17)	intron (NM_001034895, intron 8 of 17)	-8140.0	NM_001285855	17179.0	Mm.2918	NM_010768	ENSMUSG00000004933	Matk	CHK|HYL|Ntk|p56ntk	megakaryocyte-associated tyrosine kinase	protein-coding	5.51173026733548	5.66430036023023	5.56891347062438	5.33728743535682	5.96244232105897	5.77131800904807	5.81030917131735	5.61879791512067	0.488526550446854	0.0669477007217707	0.275989057001499
Merged-chr13-81025504-4	chr13	81025352	81025552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	IAPEY3-int|LTR|ERVK	61378.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	6.72440392779958	6.39139396018375	6.56189165576078	4.68465259972151	6.04022613756757	6.30912312066095	6.23481559603797	6.04206622090494	-0.22683686999458	0.70922272750315	0.883397751700878
Merged-chr11-97663419-8	chr11	97663247	97663447	+	913.2589109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139311)	promoter-TSS (NM_139311)	-65.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	4.63787940311209	4.65125487128602	4.52073940857695	3.83984068366111	4.74067958801708	4.84680985056236	4.45819149724365	4.29404357707163	0.358497510610617	0.413054067983298	0.708025900180209
Merged-chr1-59604131-3	chr1	59604029	59604229	+	762.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013771, intron 12 of 19)	intron (NM_001013771, intron 12 of 19)	66705.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	3.38143989647125	3.0558892342691	3.15861348031524	3.46175880592919	3.12153074675604	3.14024193823931	3.51060932529708	2.88845808015242	-0.353848904733714	0.561129845637001	0.804849597634179
Merged-chr12-116405303-4	chr12	116405223	116405423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028421)	promoter-TSS (NR_028421)	-79.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	8.71176725347114	8.69485127845219	8.55645140791017	8.52430787549264	9.05866919621725	9.08357943488544	9.09486061416689	8.75433909400467	0.479272460890531	0.00211027982916709	0.0243764375138404
Merged-chr18-73839793-4	chr18	73839685	73839885	+	869.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19600.0	NM_027741	71263.0	Mm.126220	NM_027741	ENSMUSG00000064036	Mro	4930507C04Rik|4933435E20Rik	maestro	protein-coding	4.18207491316424	4.20839070097528	4.03472811654819	4.61768490959443	4.22603927059844	4.35483857939106	4.33669461794269	3.86609978944385	-0.217814668438047	0.621450915284349	0.837822329002936
Merged-chr3-147070773-1	chr3	147070673	147070873	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	218406.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	3.7655582989884	3.95693970940588	3.76611407004452	3.4108083897394	3.6692224362832	3.6099476962769	3.64908558094927	3.55097444796795	-0.33246469050067	0.504173751855044	0.770626277304553
Merged-chr15-41760229-1	chr15	41760129	41760329	+	1000.0	f0_balb.idr	intron (NR_152565, intron 3 of 17)	Lx4A|LINE|L1	-28766.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	3.71976027032185	3.10063152915494	3.1995908788386	3.53733126674773	3.14640278650472	3.43605940361229	3.36597460487463	3.32028115449865	-0.34607182412348	0.542553892957595	0.793895630500676
Merged-chr9-67847328-3	chr9	67847263	67847463	+	943.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177184, intron 1 of 84)	intron (NM_177184, intron 1 of 84)	6967.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	3.80561413169394	3.61001424410255	3.70761496647527	4.10458406304319	3.27184752451225	3.8269631372206	3.47207276238877	3.4828424484688	-0.977748301206791	0.063225944511153	0.266861925068748
Merged-chr6-143100191-4	chr6	143100089	143100289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029897)	promoter-TSS (NM_029897)	-37.0	NM_001109688	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	7.80605958155128	7.85769526987851	7.3960152729947	7.80494754125395	7.95424238939325	7.96168930373519	7.93972522937386	7.57734225845446	0.177007846162439	0.35371209900768	0.66051560970873
Merged-chr16-91399120-4	chr16	91399015	91399215	+	974.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 7 of 7)	intron (NM_001347258, intron 7 of 7)	-7120.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	5.06830146018204	5.02532035660057	4.57867605070137	4.74660746080549	4.87450796292881	4.88623874275502	5.01273655083206	5.09656308510278	0.208392915828958	0.532476636354021	0.78817714997576
Merged-chr14-103547893-4	chr14	103547827	103548027	+	840.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022886, intron 8 of 30)	B1_Mm|SINE|Alu	34586.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	3.00583458614683	3.23185441273719	3.25562680342109	2.71678078803642	3.44755322980784	3.18533472086643	3.24264041815742	3.41361304835945	1.02196255845139	0.0878666926482146	0.323317996071509
Merged-chr7-16403536-6	chr7	16403443	16403643	+	942.305542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198631, intron 1 of 13)	intron (NM_198631, intron 1 of 13)	2347.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	4.3879835787691	4.3475943989172	4.20890236534665	4.30802550157414	4.26913361093682	4.42960846832689	4.2829486228576	4.54318821936172	0.157641556397472	0.676372372751346	0.867097153109958
Merged-chr12-85703638-4	chr12	85703523	85703723	+	687.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	16903.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	3.90335609931117	3.41386055941942	3.53289641493272	3.47249947627676	4.1345447746117	3.76983120692522	4.09545247766103	3.53109576441332	0.953582082797412	0.0585160742484007	0.254430815877803
Merged-chr17-24707634-4	chr17	24707549	24707749	+	979.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145396)	promoter-TSS (NM_145396)	4.0	NM_145396	213773.0	Mm.100353	NM_145396	ENSMUSG00000040688	Tbl3	9430070M15Rik	transducin (beta)-like 3	protein-coding	5.72959484984724	5.65397340181023	4.9714792868517	5.38684149095624	6.17278551449516	6.23224036991565	5.59785180701585	6.09244300063703	0.950393999426253	0.00190552834478493	0.0225230159504229
Merged-chr10-4456616-3	chr10	4456523	4456723	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	24018.0	NM_024261	73419.0	Mm.346733	NM_024261	ENSMUSG00000061759	Armt1	1700052N19Rik|AW320013|AW536799	acidic residue methyltransferase 1	protein-coding	3.57641660703369	4.00030486677577	3.45138864436752	4.20792603794241	3.74353356209834	3.80969291150562	3.73035066250352	3.79478710641683	-0.27039738647865	0.600986026204157	0.827051492743764
Merged-chr4-143412764-4	chr4	143412670	143412870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355724, exon 1 of 4)	5' UTR (NM_001355724, exon 1 of 4)	344.0	NM_001355724	242736.0	Mm.275953	NM_172877	ENSMUSG00000046862	Pramef8	4732496O08Rik|AU023234	PRAME family member 8	protein-coding	8.07672617560291	8.24370045385312	7.72461493420017	7.85634038154578	8.11823182336885	8.42909731694971	7.97388292528292	7.96563851385377	0.186019563362303	0.342629732684988	0.6516462545027
Merged-chr5-137779245-2	chr5	137779145	137779345	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027242, intron 1 of 3)	CpG	341.0	NM_027242	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	3.59096073777503	3.49263065351665	2.97530621806937	3.52769764680605	3.36497022068527	3.36923166543718	3.62362906986254	3.48730450802222	0.142410731510056	0.801152972990885	0.923340719847852
Merged-chr11-34220863-4	chr11	34220759	34220959	+	873.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-12770.0	NM_023907	14233.0	Mm.32926	NM_023907	ENSMUSG00000047861	Foxi1	5830401E05Rik|FREAC6|Fkh10|HFH-3|Hfh3	forkhead box I1	protein-coding	4.19763805816442	4.23143966089198	4.06189268588397	3.32280964630188	4.14118321554793	4.03440592375168	4.41179535883366	3.90723678325934	0.353090903202654	0.491145923547205	0.762813557894214
Merged-chr14-31930626-4	chr14	31930545	31930745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	-98458.0	NM_030166	78754.0	Mm.40681	NM_030166	ENSMUSG00000021903	Galnt15	4631401E18Rik|Galntl2|mpp-GalNAc-T15	polypeptide N-acetylgalactosaminyltransferase 15	protein-coding	6.43394614511027	5.98777563108452	6.28618037382244	6.68126071864467	6.5768775952202	6.42410836437653	6.71032969618508	6.95349922659742	0.426598585702862	0.0951673490107215	0.337564994031701
Merged-chr4-133277729-4	chr4	133277648	133277848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110978)	promoter-TSS (NR_110978)	42.0	NM_025667	52174.0	Mm.244748	NM_025667	ENSMUSG00000028857	Tmem222	5730406H10Rik|AA409341|D4Ertd196e	transmembrane protein 222	protein-coding	6.56812368718143	6.86647418819978	6.20145737010603	6.07103677893773	7.31824859350854	7.27354372810905	7.05044763385939	6.7804106034911	0.942264248587504	0.000274634050727841	0.00472178190742923
Merged-chr9-45412506-4	chr9	45412405	45412605	+	906.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6428.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	4.67601658826881	4.55666261380006	3.96422226646907	4.38573892013292	4.21738406903146	4.35899750270225	4.43273868541654	4.49049710975411	-0.109219651704567	0.788882170081732	0.918218958746874
Merged-chr4-88760662-3	chr4	88760553	88760753	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085531)	promoter-TSS (NM_001085531)	-121.0	NM_001085531	545645.0	Mm.489553	NM_001085531	ENSMUSG00000100505	Gm13283	EG545645	predicted gene 13283	protein-coding	3.57150271887454	3.4343307063007	3.57200068336458	2.45408384363783	5.60352482418544	5.65311396251736	5.72638287040089	5.75446928713838	9.41448618063218	3.05600837310958e-24	1.75422274185134e-21
Merged-chr11-117779092-4	chr11	117778985	117779185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145439, intron 2 of 19)	intron (NM_145439, intron 2 of 19)	563.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	5.97147338827668	6.07906341036958	6.23051027545573	6.13412436197813	5.7160697446946	5.73958553274421	6.02672945341821	5.96826760982918	-0.386964284312186	0.114288865844449	0.373866776135947
Merged-chr3-54317431-4	chr3	54317338	54317538	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253682, intron 10 of 11)	intron (NM_001253682, intron 10 of 11)	-43669.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	4.59086791746291	4.65046462501833	4.59160909809418	4.8838950927413	4.11567689140272	4.41063027531411	4.40391423406558	4.77128205767009	-0.578296255085392	0.13814495531776	0.413516959273429
Merged-chr10-63382811-4	chr10	63382636	63382836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253685, intron 1 of 4)	intron (NM_001253685, intron 1 of 4)	293.0	NM_001253685	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	6.53752001567123	6.53948240724623	6.09992877286332	6.63649658729606	6.25575339527496	6.06603595747984	6.40952249061836	6.07354709373266	-0.400726741251459	0.0982368333317199	0.343640631006413
Merged-chr2-146848113-2	chr2	146848027	146848227	+	868.216675	f0_balb.idr|f1_balb.idr	Intergenic	LTR16C|LTR|ERVL	-7762.0	NM_001033298	228730.0	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	4.64842014636282	4.85037763750877	4.54243380004254	4.98365377294219	3.68258987138348	3.80847660688294	3.7375731087086	3.87660443083552	-2.71858134131291	3.59210243372211e-09	2.08040894328646e-07
Merged-chr7-6363229-1	chr7	6363129	6363329	+	1000.0	f0_c57.idr	promoter-TSS (NM_001025163)	promoter-TSS (NM_001025163)	-79.0	NM_001025163	330463.0	Mm.136456	NM_177888	ENSMUSG00000055150	Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding	7.17977591772579	7.17522525870533	7.73789052819881	7.14827739667663	6.70432759317948	7.11335110368488	6.96621868287001	7.05933240110023	-0.500778919038482	0.026431554396643	0.154185511424246
Merged-chr11-120990537-4	chr11	120990467	120990667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027874, intron 1 of 9)	C-rich|Low_complexity|Low_complexity	766.0	NM_139059	104318.0	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	4.78661755435297	4.84461065646965	4.51860641657481	4.75903316201169	5.04269225352017	5.45655040791781	5.50505200602845	4.97257301881469	1.00890149994417	0.00279645404234368	0.0302459812004225
Merged-chr10-60305419-4	chr10	60305315	60305515	+	980.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 65 of 68)	intron (NM_001252635, intron 65 of 68)	20954.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	6.0025145138889	5.09311490366927	5.51815048345946	5.71359918921139	5.51524320421904	5.66576767465972	5.54522729256461	5.7686715282958	0.00120823062182472	0.996876899948782	0.998780003572709
Merged-chr9-63974850-3	chr9	63974739	63974939	+	952.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	47220.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	4.17146004897051	3.83448587581291	4.28731993521275	4.45503374745358	3.70645096965168	3.5511515544196	3.35072806311861	3.62725938692316	-1.90053322343067	0.000245391847314574	0.00429668967455983
Merged-chr19-12595692-4	chr19	12595596	12595796	+	914.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015503, intron 1 of 1)	intron (NR_015503, intron 1 of 1)	870.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	5.0045593060966	4.65784205026887	4.73259567287176	5.28333531173226	4.71712910979516	4.3574631676146	4.50639095057565	4.61003915256938	-0.836026495388292	0.0275822656644667	0.15844272687142
Merged-chr9-97115708-4	chr9	97115616	97115816	+	955.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4675.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	4.72879095925861	4.75227375994942	5.0705292424451	4.66024611412714	4.65073916510284	4.94142819688756	4.74560036868467	4.83860696167604	-0.0195868116990116	0.954331225320941	0.98373809489276
Merged-chr2-144009246-4	chr2	144009140	144009340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	2023.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	6.14903879379138	6.25916027296461	6.55553184255598	6.33803083691102	6.10406144458051	6.26326403286996	6.49163678611438	6.14573381397143	-0.118224714219757	0.616538923447198	0.835070483179481
Merged-chr11-3163821-2	chr11	3163691	3163891	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 9 of 32)	RLTR51B_Mm|LTR|ERVK?	29672.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	4.96507856132007	4.50548184841818	4.99138326894889	4.68729056749901	3.08901038874914	3.49238525395445	3.35072500725815	3.3601292488802	-6.82224574889054	1.00175575179187e-10	7.65064084300362e-09
Merged-chr6-143074161-4	chr6	143074095	143074295	+	972.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362117, intron 7 of 26)	intron (NM_001362117, intron 7 of 26)	25957.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	5.22384523009037	5.17756514561906	4.70510467237744	5.2504530364354	4.97559613489825	4.75156519842301	4.76558696826516	5.00488358357812	-0.455704460588232	0.175397289967793	0.470111788570704
Merged-chr13-111461567-3	chr13	111461431	111461631	+	888.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361926, intron 2 of 10)	intron (NM_001361926, intron 2 of 10)	28596.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	4.1689482142965	3.83360944813137	3.61275502342625	3.80462715550332	4.00929608757504	4.01775813899265	3.82810381084923	4.20722572860489	0.428608659892503	0.342698868412612	0.6516462545027
Merged-chr3-93375405-3	chr3	93375302	93375502	+	753.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-18297.0	NM_009100	20129.0	Mm.1417	NM_009100	ENSMUSG00000041984	Rptn	-	repetin	protein-coding	3.49669430924853	3.31695673655711	3.68680343245818	3.69066271505811	3.1583080808781	3.18843657954999	3.20122227730236	3.21043278222774	-1.38007693853515	0.0123992050579046	0.0919049272952821
Merged-chr12-112722115-3	chr12	112721995	112722195	+	891.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024602)	promoter-TSS (NM_001024602)	-79.0	NM_001024602	217882.0	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	4.51234324140295	4.11610055101322	3.65372027949421	4.15858994292607	3.53071163533538	3.83471576254122	3.6990925329375	3.76838141845189	-1.24283566750361	0.0120299072181842	0.0901165457671969
Merged-chr11-82175000-4	chr11	82174904	82175104	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4808.0	NM_011329	20290.0	Mm.1283	NM_011329	ENSMUSG00000020702	Ccl1	BF534335|I-309|P500|Scya1|Tca-3|Tca3	chemokine (C-C motif) ligand 1	protein-coding	4.01230325634499	4.2267646422908	3.84269819026855	3.75970287434116	4.68677455851285	4.59153647832513	4.09764949499574	4.3793999762358	1.2361189825254	0.0037895818615213	0.0384024270104249
Merged-chr17-34837071-4	chr17	34836972	34837172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163770)	promoter-TSS (NM_001163770)	53.0	NM_001163770	112403.0	Mm.275309	NM_033613	ENSMUSG00000040482	Dxo	Dom3z|NG6	decapping exoribonuclease	protein-coding	7.01488234472743	7.40083956734674	6.74468721761486	6.62845233549819	7.61566719400085	7.46897484653485	7.53115106327934	7.09801603304538	0.635564295078546	0.00816913942278771	0.0681237075594584
Merged-chr11-62551644-4	chr11	62551536	62551736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313984)	promoter-TSS (NM_001313984)	-95.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	7.96743500869836	8.39190074284686	7.44698652241423	7.15526558207373	7.87861257387253	8.13974111295691	7.58830820283784	7.40074259504287	-0.0588743435014903	0.836544722736208	0.937840273733924
Merged-chr19-37509928-4	chr19	37509839	37510039	+	973.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40479.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	4.48090724218569	4.62301715594008	4.09365689465032	4.43419793009956	4.5231119268661	4.77210329648725	4.61723557512401	4.4787556852467	0.386595444006689	0.30437296994569	0.616988329768724
Merged-chr14-121929104-4	chr14	121929005	121929205	+	993.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-13331.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	6.45850906415919	5.94114889931476	5.64117556615137	5.82228457719269	5.16398002961794	5.17354945654311	5.19354987049026	5.21571423480881	-1.38982267022044	7.07539252330755e-06	0.000202419358688307
Merged-chr10-77523305-4	chr10	77523212	77523412	+	935.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7036.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	4.73562885561181	4.6473999790343	4.58875768319041	4.80224383558825	4.52641087772119	4.40860899019213	4.44545156274155	4.22727588660512	-0.650980153946129	0.0740899993824183	0.293250398992191
Merged-chr5-135702787-4	chr5	135702690	135702890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	L1MC4a|LINE|L1	13645.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	7.3230787060873	7.46178421947079	7.22760615109864	7.21014572722362	7.42458968247896	7.5319011458662	7.1461353408831	7.44689665077624	0.119270409275648	0.524715219029376	0.783073646450333
Merged-chr13-55327865-4	chr13	55327773	55327973	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016662, intron 4 of 5)	intron (NM_016662, intron 4 of 5)	1857.0	NM_016662	17121.0	Mm.20350	NM_016662	ENSMUSG00000021485	Mxd3	4631412E13Rik|Mad3|bHLHc13	Max dimerization protein 3	protein-coding	6.09900381097148	5.89158647349066	5.02823741323363	5.611036284983	5.74069454079414	5.53760232297479	5.78782119601729	5.53614785899946	-0.0915008574194449	0.777084077201999	0.913034573074491
Merged-chr7-66140342-4	chr7	66140261	66140461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 2 of 2)	L1MC3|LINE|L1	30846.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	6.85677573164339	6.41099057845268	6.10998214715609	6.20488661553256	6.34372982031936	6.45316128706803	6.42428193016945	6.55001533702529	0.0337707258643806	0.893222163313506	0.960083663472744
Merged-chr3-60518634-1	chr3	60518534	60518734	+	685.0	f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	17455.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	2.87886835793145	2.9212865127716	2.94671102819718	2.79315275125501	3.52465025363549	3.18316692335722	3.28192769392382	3.29383557862593	1.93250873259061	0.000686597586269385	0.00996967147961415
Merged-chr2-69885608-4	chr2	69885504	69885704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029280)	promoter-TSS (NM_029280)	11.0	NM_029280	75422.0	Mm.10508	NM_029280	ENSMUSG00000051730	Mettl5	2810410A08Rik	methyltransferase like 5	protein-coding	5.97876961603595	5.40726295747493	5.82343864786023	5.87778740424823	5.82959886103738	5.67918140682849	6.06858120641409	6.03697577182822	0.195860141921595	0.471255423897032	0.749763001969747
Merged-chr15-28026134-4	chr15	28026045	28026245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081302)	promoter-TSS (NM_001081302)	-297.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	8.57529324435425	8.77082988842099	8.55762628746892	8.89636436146013	8.62849845577787	8.53839979603111	8.84465089351507	8.4048213687539	-0.123574718656135	0.472376658202146	0.750553554939295
Merged-chr8-120319638-4	chr8	120319557	120319757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91427.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	6.03555236333047	6.08354698422513	5.85369869850843	5.73945312841171	6.12670002316771	6.37038169682903	6.14576796919014	5.94421633230057	0.358390458116095	0.148858619851946	0.430746673512948
Merged-chr10-21188905-3	chr10	21188806	21189006	+	745.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152786)	TTS (NR_152786)	1962.0	NR_152786	102636600.0	Mm.227606	NR_152786	ENSMUSG00000111005	Gm33619	-	predicted gene, 33619	ncRNA	3.04564474274579	3.46687696456795	3.04596361811283	3.2858885291788	3.34352200574525	3.22001979649972	3.21939116384011	3.22965019127662	0.10052121852016	0.857793430971301	0.946392149155271
Merged-chr6-90463135-4	chr6	90463060	90463260	+	873.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355668, intron 1 of 2)	CpG	584.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	4.33176694499765	4.14929269442499	4.33245558405396	4.30827049577984	4.06110957303664	4.1340723125254	4.09377566612985	4.10873888665161	-0.472864081441146	0.232907208282708	0.542519398781754
Merged-chr18-23431126-4	chr18	23431022	23431222	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361217, intron 1 of 20)	intron (NM_001361217, intron 1 of 20)	15713.0	NM_001361217	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	4.87570876198118	4.94330002182948	5.04110178456594	5.4042193644794	4.39431539436404	4.90312059750545	4.29551662652727	4.51070547855493	-1.16781747326606	0.00200924096402895	0.0234774262168841
Merged-chr2-127251841-4	chr2	127251747	127251947	+	859.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175145, intron 2 of 3)	intron (NM_175145, intron 2 of 3)	3872.0	NM_175145	69470.0	Mm.200889	NM_175145	ENSMUSG00000034850	Tmem127	2310003P10Rik|AI314202|AI317350	transmembrane protein 127	protein-coding	4.30688994228656	4.3977567926819	3.9154676396468	3.92017587253786	4.44256036313914	4.20180874382373	4.10855184171245	4.42549731228606	0.402239364013342	0.342711407952756	0.6516462545027
Merged-chr11-60046447-4	chr11	60046336	60046536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290012)	promoter-TSS (NM_001290012)	53.0	NM_001290012	18618.0	Mm.2731	NM_008819	ENSMUSG00000000301	Pemt	PEAMT|PEMT2|PLMT|Pempt|Pempt2	phosphatidylethanolamine N-methyltransferase	protein-coding	6.86861748312928	6.77713732182033	6.95502428349869	6.325985861003	6.3003211559393	6.68357245697382	6.29377088596013	6.34090921838162	-0.478963881178082	0.053289947747118	0.240848637417748
Merged-chr18-34596002-4	chr18	34595893	34596093	+	885.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177773, exon 1 of 6)	exon (NM_177773, exon 1 of 6)	1475.0	NM_177773	271508.0	Mm.417609	NM_177773	ENSMUSG00000049357	4933408B17Rik	-	RIKEN cDNA 4933408B17 gene	protein-coding	4.00710617561503	3.94662222528605	4.24871214903325	4.21199667012315	4.15755241378016	4.6910561389889	4.35368390312885	3.89530904834627	0.462530028109977	0.293594756957745	0.606066564354147
Merged-chr17-28328358-7	chr17	28328266	28328466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011287)	promoter-TSS (NM_011287)	-105.0	NM_011287	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	6.35530988069114	6.69565202677846	6.80775250521181	6.33826436504799	6.48398068081417	6.62290583033459	6.43104536071413	6.59022735324161	-0.0343298724781438	0.880597005504288	0.955181994949486
Merged-chr10-128779092-4	chr10	128778997	128779197	+	955.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11813.0	NM_001164197	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	4.97836887573132	4.49540138572856	5.15149516941313	5.76649271257651	5.31209191607135	4.73437587902055	5.46088499467341	5.17973897743695	0.00608914132430179	0.988446938849531	0.995447921566191
Merged-chr2-165060093-4	chr2	165059987	165060187	+	937.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027852, intron 1 of 7)	RSINE1|SINE|B4	4451.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	4.08676415228372	4.81209937969145	4.29817851240569	4.10079192855559	4.72482815426096	4.88306763138555	4.75785850768569	4.34340741213257	0.742835711286629	0.0755165570083737	0.296808007250085
Merged-chr14-62026761-4	chr14	62026667	62026867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	266212.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	5.65403158752806	5.36659044732331	5.53166462487426	5.51560254779649	5.54471657548461	4.86813118173128	5.30917037369928	5.33192700055484	-0.383933355522416	0.210104156939555	0.514583471300609
Merged-chr19-55934980-3	chr19	55934776	55934976	+	793.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39555.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.20048897957073	3.23550125117158	3.8092181705507	3.01062721492021	3.03045905986848	3.12044587963503	2.92824178004847	3.19919325182651	-1.03794055087833	0.097150451389264	0.341549210394781
Merged-chr6-127109607-4	chr6	127109493	127109693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177003)	promoter-TSS (NM_177003)	-41.0	NM_177003	319801.0	Mm.101836	NM_177003	ENSMUSG00000038028	Tigar	9630033F20Rik|AA793651|AI595337|C79710|C85509	Trp53 induced glycolysis repulatory phosphatase	protein-coding	7.32400804284038	7.44125707798923	7.17725614922623	7.20669124991118	7.17354189611683	7.08002620986603	7.2276537184736	6.66845077081804	-0.313616797428811	0.12928358510234	0.400152346767879
Merged-chr7-107044583-4	chr7	107044501	107044701	+	760.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8465.0	NM_147034	259036.0	Mm.377801	NM_147034	ENSMUSG00000073898	Olfr713	MOR263-1|P3	olfactory receptor 713	protein-coding	4.43239356400391	4.12804840559032	4.30429961869488	4.63730667556946	3.98125828124425	4.52116320468449	4.59991331877642	4.20815851342859	-0.133666992215834	0.754397084803697	0.903294251913372
Merged-chr8-115070433-3	chr8	115070335	115070535	+	697.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	630783.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	3.50220851303258	3.53641859701999	3.6713321645333	3.99808085861104	3.62081073682413	3.67745396758948	3.54810531678494	3.90839919624484	-0.0481272091263985	0.924252112077448	0.971949015831349
Merged-chr7-19797386-4	chr7	19797297	19797497	+	868.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023224)	promoter-TSS (NM_023224)	-588.0	NM_023224	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	4.73266750687487	4.42160470588017	3.99556867802452	4.3684235569975	4.91367417504335	4.59144842920936	4.56295308349668	4.73025210115039	0.684777493364062	0.0796190386687812	0.305608474622799
Merged-chr9-66124246-4	chr9	66124159	66124359	+	928.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019727, intron 1 of 14)	intron (NM_019727, intron 1 of 14)	627.0	NM_019727	56440.0	Mm.271891	NM_019727	ENSMUSG00000032382	Snx1	-	sorting nexin 1	protein-coding	3.83186873011783	3.91518739704265	3.93731363508876	3.94412848671681	4.27491952971221	3.89637225438302	4.1483585291392	4.03192808361076	0.517692739828097	0.220842705337429	0.528897510959013
Merged-chr11-98355927-3	chr11	98355832	98356032	+	713.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313970, intron 5 of 6)	intron (NM_001313970, intron 5 of 6)	2351.0	NR_045477	69338.0	Mm.398308	NR_045477	ENSMUSG00000085944	1700003D09Rik	-	RIKEN cDNA 1700003D09 gene	ncRNA	3.44373586601888	3.31298038584269	3.28231959159674	3.15845468847106	3.44394752930763	3.20626614028594	3.21213973136909	3.33691602141735	0.056101922830445	0.916487016743903	0.969045329388458
Merged-chr1-53352739-4	chr1	53352636	53352836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001353501)	promoter-TSS (NM_001353501)	16.0	NM_001290984	70396.0	Mm.285783	NM_133728	ENSMUSG00000026095	Asnsd1	2210409M21Rik	asparagine synthetase domain containing 1	protein-coding	8.1151609243641	8.12666334662642	7.87907754835786	8.32943719406026	8.28576340738993	8.3068176673347	8.43903088617132	8.03912813416769	0.184987987725425	0.301045369127243	0.612994478573963
Merged-chr3-37073448-3	chr3	37073346	37073546	+	997.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009350, intron 5 of 11)	L1_Mus3|LINE|L1	9790.0	NM_009350	21744.0	Mm.8122	NM_009350	ENSMUSG00000027719	Adad1	Tenr	adenosine deaminase domain containing 1 (testis specific)	protein-coding	4.522469360571	4.9205912508963	5.14777998000067	4.37082579754521	4.01099874592356	3.9829681359519	4.57924617596265	3.91733271295038	-1.44493105295342	0.00187724365304438	0.022263002840385
Merged-chr10-6916740-4	chr10	6916659	6916859	+	941.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001170802)	TTS (NM_001170802)	63522.0	NM_001347225	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	4.86958128743356	4.55722736340252	4.09576949305409	5.00587342627221	4.49218848872066	4.71397873050811	4.51928835365043	4.57834216965614	-0.250825789119315	0.541392683632089	0.793237936001129
Merged-chr11-110608700-3	chr11	110608593	110608793	+	567.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	129353.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	2.74139174194735	3.16464989852014	2.96990351764796	2.80615712582569	2.54917847776316	2.40608062787308	2.38170162177801	2.46435362565104	-2.73483074034395	0.00110176210171255	0.0145267898686795
Merged-chr7-35030610-3	chr7	35030517	35030717	+	681.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	25949.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	2.97013280210647	3.0104730202745	2.91053459417225	2.88736703476348	2.62829402135684	2.95530634258323	2.95922590609635	2.84631304486089	-0.43140389918676	0.487260180484073	0.760600900973846
Merged-chr4-136206280-4	chr4	136206196	136206396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355698)	promoter-TSS (NM_001355698)	-69.0	NM_001008232	230837.0	Mm.77788	NM_001008232	ENSMUSG00000036995	Asap3	9430088F20Rik|Ddefl1|Gm140|UPLC1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	protein-coding	5.72792705011396	5.75806826904579	5.4787283946826	5.52080024528316	5.01052251385457	5.56804720254326	5.30572694817648	5.23183870731824	-0.603301928682599	0.0414252617912347	0.206109933527072
Merged-chr2-19004975-4	chr2	19004869	19005069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6650.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	6.95238974954261	6.88830003386392	7.46462310757084	7.59013244550436	6.74187307786967	6.96308243222474	6.86487823176634	7.00018045480773	-0.521508011738953	0.0269094372814831	0.155947005160655
Merged-chr16-57536789-4	chr16	57536706	57536906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-12436.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	7.57748137149686	7.97142808278503	7.5608517590122	7.71989368818978	7.50298900001316	7.78244201702059	7.50554240071279	7.3920997451601	-0.224685821349665	0.237952782312483	0.548249621400878
Merged-chr19-10860327-3	chr19	10860225	10860425	+	914.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133804, exon 9 of 11)	exon (NM_133804, exon 9 of 11)	9454.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	4.01755427156028	3.93186726878489	3.97130565576802	3.65818785104303	3.72327408336251	3.76863806065524	3.69348542933301	4.44039056607281	0.138601620743952	0.778537197181215	0.913781420202775
Merged-chr2-14239748-4	chr2	14239723	14239923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 2 of 29)	ID_B1|SINE|B4	10409.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	3.74430851601069	3.55737469570733	3.69301652402812	3.68634110148661	3.55210393959912	3.91371726570034	3.67821633308789	3.8859294227142	0.26428283548744	0.572344710186343	0.811241469719098
Merged-chr13-47226737-2	chr13	47226639	47226839	+	761.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 3 of 7)	B3A|SINE|B2	32736.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	2.96037424035933	2.80681205409336	2.75965187020824	2.68943877891388	3.15091986569348	3.07134208112785	2.9500233792389	3.28642603578664	1.387896721666	0.0194931193360613	0.125770553047635
Merged-chr8-84990013-4	chr8	84989902	84990102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167991)	promoter-TSS (NM_001167991)	-593.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	5.26819833525001	5.59033619312478	5.39581698307329	5.39824831204789	5.63305128166484	5.62966739025287	5.51052717734849	5.75613797557629	0.369276599618729	0.171124363816509	0.464194401375582
Merged-chr13-54589563-4	chr13	54589437	54589637	+	921.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025933)	promoter-TSS (NM_025933)	537.0	NM_178605	28126.0	Mm.439993	NM_178605	ENSMUSG00000025869	Nop16	AA409471|D13Wsu177e	NOP16 nucleolar protein	protein-coding	4.67852937207672	4.405574095956	4.29431090705385	4.6588895409869	4.86962811430027	4.52016773759014	4.37110050987627	4.78223775278766	0.28766893414725	0.449062132106993	0.734274602596307
Merged-chr7-84212255-3	chr7	84212126	84212326	+	656.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60333.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	2.20507252595595	2.16297954683285	2.20522891959722	2.16749774872357	2.98586409536366	2.98761437454173	2.56926441057512	2.57796225871755	3.71838244086107	6.1489041645042e-05	0.00134710018321097
Merged-chr15-57995903-4	chr15	57995855	57996055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173862, intron 3 of 3)	L1MB8|LINE|L1	10052.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	3.99116112004286	4.13262543452605	4.27536010159112	4.03418321327877	4.14296616514381	4.16848443440256	3.92218995970721	4.63736467946608	0.33885226072702	0.431988763426054	0.72208459225285
Merged-chr14-8216327-4	chr14	8216218	8216418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305937)	promoter-TSS (NM_001305937)	70.0	NM_001305937	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	6.53656647761569	6.87375718206283	6.87226759189402	7.47234449706296	6.6311826053343	6.54996701946737	6.95163606418838	6.72629490854373	-0.393998013977179	0.130070813035791	0.401487875155012
Merged-chr6-129276678-4	chr6	129276598	129276798	+	986.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1329.0	NM_001033122	12515.0	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	4.92340171553919	4.79388299579242	4.74278034080667	4.64504243073232	4.85008399565585	4.83773563376488	4.8664237016218	4.92089206554189	0.206885999272803	0.525234553440574	0.783229855070132
Merged-chr13-23519654-3	chr13	23519554	23519754	+	981.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Gln-CAA|tRNA|tRNA	-11390.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	4.33666944857014	4.44504119113758	4.16283074069359	4.35578815943922	3.86857488854021	3.96923919627151	4.27637694706658	4.1603069136366	-0.662954363514123	0.109394951823589	0.365260497037771
Merged-chr11-77607965-4	chr11	77607865	77608065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144825)	promoter-TSS (NM_144825)	-150.0	NM_144825	216965.0	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	7.07075923167235	7.06640953803483	6.79887187741878	6.75543884370787	7.17323786547185	7.16381425383467	6.92692241724397	6.67218000562971	0.111533201156493	0.60758958083617	0.830072719800728
Merged-chr11-6416175-2	chr11	6416075	6416275	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008907, intron 1 of 4)	CpG	305.0	NM_008907	268373.0	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	6.77604856847381	7.4012462187796	6.77724001450119	6.67983101709968	7.40650784739334	7.57263489745982	7.25180822228032	7.23093897719244	0.588966174992708	0.0114120305851757	0.0867097486146692
Merged-chr7-127386846-3	chr7	127386736	127386936	+	904.8666380000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030226, exon 1 of 3)	exon (NM_030226, exon 1 of 3)	330.0	NM_030226	78921.0	Mm.200950	NM_030226	ENSMUSG00000030823	9130019O22Rik	-	RIKEN cDNA 9130019O22 gene	protein-coding	3.93682079264054	4.47564160140919	4.14707774405058	4.08248557188031	4.34413644717088	4.32100041557102	4.30800378149483	4.3663073412201	0.39372156611345	0.327796620229918	0.639171090552293
Merged-chr6-121191792-4	chr6	121191691	121191891	+	915.837524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304773, intron 4 of 4)	intron (NM_001304773, intron 4 of 4)	8124.0	NM_001304773	74043.0	Mm.491240	NM_028730	ENSMUSG00000067825	Pex26	4632428M11Rik	peroxisomal biogenesis factor 26	protein-coding	4.67214614247693	4.31135460863822	4.40751431817663	4.26691488533599	4.92393105532772	5.0660503918474	5.42557552783133	4.49912149331531	1.26415694842757	0.00103020149480944	0.0137732367015479
Merged-chr16-13733804-3	chr16	13733688	13733888	+	820.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040574, intron 1 of 2)	intron (NR_040574, intron 1 of 2)	-3304.0	NM_011987	26565.0	Mm.4214	NM_011987	ENSMUSG00000022683	Pla2g10	GX sPLA2|PLA2GX|sPLA2-X	phospholipase A2, group X	protein-coding	3.53630318748075	3.14644205381216	3.91634304035236	2.92540851632306	3.04636804138074	3.18352910737206	3.18981349450145	3.2619958850603	-0.941875927824229	0.137421361709453	0.412339394027364
Merged-chr13-23696317-3	chr13	23696170	23696370	+	793.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010377, exon 1 of 1)	exon (NM_010377, exon 1 of 1)	459.0	NM_010377	107970.0	Mm.8048	NM_010377	ENSMUSG00000036211	Hist1h1t	H1.6|H1ft|H1t	histone cluster 1, H1t	protein-coding	2.99543440727602	2.90608814603086	3.12896826294979	2.65083737113506	3.42171299678441	3.42430478497323	3.54106296004542	3.35924027103876	2.11389564711927	0.000317009737162683	0.00530179419208237
Merged-chr11-6629915-2	chr11	6629815	6630015	+	851.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3848.0	NM_134011	21379.0	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	2.84345126635536	2.63561380944747	2.56831854444534	2.55673669611967	3.09353693733634	2.8882879884257	2.89336035427182	3.01639424952563	1.54265806924884	0.0138640974079223	0.0993388956511478
Merged-chr13-19794672-1	chr13	19794572	19794772	+	989.0	f0_balb.idr	intron (NM_181754, intron 2 of 4)	ORR1B1|LTR|ERVL-MaLR	29585.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	2.87767195818752	2.72340077470921	3.19087516464895	3.22484299422158	2.58090426603062	2.48537397458411	2.60980443498483	2.54212615088665	-2.50973098202387	0.00126248832994919	0.0162148424463106
Merged-chr5-113054513-2	chr5	113054418	113054618	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15599.0	NM_007773	12961.0	Mm.1215	NM_007773	ENSMUSG00000042240	Crybb2	Cryb-2	crystallin, beta B2	protein-coding	3.31326792962107	2.97510212730106	3.12525071541105	3.25847503159739	3.55278395125069	3.42779174297595	3.60773230758704	3.4763934274729	1.18927897173718	0.0263748848108799	0.153985892071453
Merged-chr16-10976273-4	chr16	10976134	10976334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	16887.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	8.35642701446559	8.3578653074384	8.57454672715284	8.37476754962251	8.25819788001247	8.33761815622663	8.46545948221844	8.12909873096957	-0.145323183079896	0.36589424679233	0.670510957016407
Merged-chr1-140175673-4	chr1	140175585	140175785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009888, intron 1 of 21)	intron (NM_009888, intron 1 of 21)	7726.0	NM_009888	12628.0	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	6.15141212019687	5.67764233770751	6.0701830061714	6.37761136708843	5.95998965035875	6.24619198259089	6.50933661203422	6.02261503103802	0.141184195989604	0.611293345037534	0.832251855180034
Merged-chr14-45661515-4	chr14	45661477	45661677	+	917.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3434.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	4.2554289695101	3.91487722163561	4.1686511951726	4.12424596393734	4.00211268886655	4.42517891748174	4.10466289224307	4.07235040735518	0.089507599901003	0.83022719936643	0.934865877107244
Merged-chr3-84037102-4	chr3	84036950	84037150	+	958.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172681, intron 2 of 34)	intron (NM_172681, intron 2 of 34)	3111.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	5.07343725574043	5.17802279483779	4.41973452503276	5.18565643778284	5.14531010825379	4.70431093574641	5.11145447062656	5.03835226804024	0.0110100770229332	0.975976152477107	0.991438232740523
Merged-chr7-24838889-4	chr7	24838812	24839012	+	900.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045096, intron 10 of 11)	intron (NR_045096, intron 10 of 11)	20117.0	NR_045096	545936.0	Mm.376228	NR_045096	ENSMUSG00000011350	Gm5893	EG545936|Gm477	predicted gene 5893	pseudo	4.82660419968574	4.40661081379718	5.17138568442247	4.33602993920128	3.81242836173425	4.62323378308663	4.23582805648774	4.72102215475437	-0.73225541195666	0.123109117828735	0.389007542303628
Merged-chr1-88653764-4	chr1	88653656	88653856	+	910.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48435.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	4.3707280617237	4.60122741374342	4.45844083269855	4.61672451216502	4.28293140277975	4.89124307143257	4.21101220026754	4.27553096044311	-0.189596418862163	0.637257642639182	0.846714859633278
Merged-chr6-146674561-3	chr6	146674451	146674651	+	889.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	17333.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	3.6562066598068	3.91530503189395	4.00510189179147	4.21586471012978	3.88974656117292	3.5207524080138	3.64306865182416	3.71060505861724	-0.780788675488137	0.111889028756641	0.369669011226742
Merged-chr5-114175793-4	chr5	114175715	114175915	+	911.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133904, intron 1 of 51)	intron (NM_133904, intron 1 of 51)	10297.0	NM_133904	100705.0	Mm.81793	NM_133904	ENSMUSG00000042010	Acacb	AI597064|AW743042|Acc2|Accb	acetyl-Coenzyme A carboxylase beta	protein-coding	6.89927690453833	7.3540829793939	6.8891644507909	6.95245398039692	4.98685385410691	5.09298474926342	5.18285103160108	5.12117632604227	-3.15444054838868	1.62539214519126e-29	1.98016630668142e-26
Merged-chr7-100474844-4	chr7	100474721	100474921	+	822.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009464, intron 1 of 6)	intron (NM_009464, intron 1 of 6)	1830.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	3.42594294717205	3.31010236790783	3.77640444153664	3.46493819766056	3.34642031533501	3.7056095553041	3.62367350646351	3.30457918648405	-0.00222668381883873	0.996627860225741	0.998649443287934
Merged-chr10-44004452-4	chr10	44004353	44004553	+	867.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172393, exon 1 of 20)	5' UTR (NM_172393, exon 1 of 20)	393.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	3.67017449595853	4.03305411900763	4.26004328599978	3.31779829973604	3.74322365165181	3.96908042864946	4.351196079703	4.17583203079524	0.563678468696367	0.285178477475896	0.596953252281083
Merged-chr18-52956658-4	chr18	52956559	52956759	+	854.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	188515.0	NM_001199154	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	3.87965102308626	4.05557244715176	3.82130501009361	3.89745683488475	4.37726793317046	4.36047768004893	4.33792167069254	4.57449129364132	1.24895560141118	0.00176718466860688	0.0212512987881009
Merged-chr7-28693673-4	chr7	28693598	28693798	+	976.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207238, intron 2 of 5)	intron (NM_207238, intron 2 of 5)	554.0	NM_001163702	233040.0	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	4.83932749130623	4.99071227953121	4.90971627012658	4.86642072704944	4.76578251085289	4.9395148537569	4.45015507705077	4.60225173679966	-0.411935094253534	0.228450327517762	0.537321649501288
Merged-chr2-52496053-2	chr2	52495953	52496153	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	62558.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	3.16408811836186	3.00062499741693	3.21904748592528	3.01374020307549	3.42639684666722	2.72536790376322	2.91100557554699	3.10592154415169	-0.087847914668109	0.892580396843767	0.959814180758426
Merged-chr1-161735000-4	chr1	161734871	161735071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53524.0	NM_001205243	14103.0	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	5.84051941289342	5.79060585965142	6.03885461747671	6.10317881505873	5.90925683130736	5.50408418788206	6.08610365842272	5.78905676606682	-0.181573207363551	0.494631657713314	0.765224301099017
Merged-chr6-57796068-4	chr6	57795958	57796158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	29067.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	6.9848917837814	7.21195054017666	7.10534119449158	6.85649486171195	7.18637548102822	7.01740104392647	6.74836352591727	6.48123471354033	-0.203259104535599	0.379653576714674	0.682157007046657
Merged-chr1-135659251-3	chr1	135659152	135659352	+	913.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60811.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	3.73891310472335	3.74578919250557	3.6914911062963	3.894332633498	3.3608386488168	3.40651845082111	3.34703992907951	3.35672105135867	-1.39141874724197	0.0060597119979614	0.0546602763024832
Merged-chr12-5226976-3	chr12	5226887	5227087	+	796.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	148695.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	3.56208037506868	3.61525607141837	3.38682170840706	3.87770704819061	3.57064740485933	3.6213214455984	3.7015031107663	3.50475110589971	-0.123424771659036	0.806416784840623	0.925417410894959
Merged-chr2-166204366-4	chr2	166204283	166204483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48700.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	6.61046159987143	6.58300118751903	6.8951244888565	6.82405624443442	6.60102339903589	6.3374167713599	6.8974811174542	6.77060650809087	-0.0994294475335965	0.657194959701075	0.857123881679102
Merged-chr17-35980364-1	chr17	35980264	35980464	+	1000.0	f0_balb.idr	promoter-TSS (NM_001165892)	promoter-TSS (NM_001165892)	409.0	NM_008136	14670.0	Mm.335754	NM_008136	ENSMUSG00000024429	Gnl1	Gna-rs1|Gnal1	guanine nucleotide binding protein-like 1	protein-coding	5.75438956031926	5.50700181018858	5.97788695928578	5.63186435800007	6.13773541956311	5.95397758002487	5.42764515263776	5.45098601453639	0.113113079607675	0.710340519363128	0.884071480587363
Merged-chr15-63614345-4	chr15	63614299	63614499	+	816.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-134791.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	4.11263578645949	3.67467864245368	4.45428428263088	4.63163297838795	3.44568765425054	3.4189226576534	3.63391414863818	3.87267473708146	-1.93349847515345	0.000408152593906186	0.00654798160624518
Merged-chr2-154603865-4	chr2	154603813	154604013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021534)	promoter-TSS (NM_021534)	-240.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	9.31842677050453	9.54407045689473	9.37860136800741	9.34918038093584	8.59095731535207	8.74272230721685	8.58443602554804	8.46594168537263	-0.995507207861744	1.73365350187649e-11	1.50855406613773e-09
Merged-chr6-31340133-4	chr6	31340034	31340234	+	851.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58639.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	3.99347844390514	4.18817735467182	3.94322431434939	4.21980207724198	4.14209933431912	4.16567701586587	4.072776249786	3.94103443337394	-0.0489130834045931	0.906641116712481	0.965374636270914
Merged-chr10-12836667-3	chr10	12836563	12836763	+	922.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 1 of 73)	intron (NM_011682, intron 1 of 73)	25072.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	4.22833005620754	3.80365584475493	4.34630270556771	3.98695651440859	4.15338779527429	4.07856620909503	3.93898061869711	3.67162576861954	-0.322027860979285	0.484874688537526	0.758880279356098
Merged-chr18-41951287-4	chr18	41951182	41951382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029942)	promoter-TSS (NM_029942)	-88.0	NM_029942	77619.0	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding	7.45568126971246	7.43787639161933	7.2711130318709	7.43805828305579	7.01862803963772	7.04169127568664	7.09011891420641	7.06030194219372	-0.481459273133678	0.00692963702848543	0.0604614653163231
Merged-chr11-97592052-3	chr11	97591960	97592160	+	985.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6451.0	NR_045496	69729.0	Mm.233452	NR_045496	ENSMUSG00000085860	2410003L11Rik	-	RIKEN cDNA 2410003L11 gene	ncRNA	4.19842597523423	4.45096406121832	4.32444538096103	4.28253690137834	3.65166603760989	3.78465356289264	4.1359225356006	4.0575947063681	-1.07033727736102	0.0152104361853954	0.105904689155851
Merged-chr11-117108851-2	chr11	117108751	117108951	+	724.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6321.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	2.69586655979951	2.90041844199456	2.83116391080573	3.01929650429917	2.65570775204281	3.06248468227298	2.88349487806661	2.95202743000961	0.0758291075135784	0.905658150997483	0.964930449989641
Merged-chr10-52284785-3	chr10	52284693	52284893	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025705, intron 3 of 10)	intron (NM_025705, intron 3 of 10)	51174.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	5.2796279587692	4.99864998011334	4.7197801512452	4.93287730005143	3.97519473563306	3.76520713080527	3.69823357517135	4.15006343475524	-2.67579872908123	7.33500099963691e-09	4.00381929565303e-07
Merged-chr11-4095310-4	chr11	4095219	4095419	+	824.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026443, exon 1 of 4)	5' UTR (NM_026443, exon 1 of 4)	112.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	3.40804619059081	3.79122822471433	3.71259613664929	3.26027839557108	3.98553740509964	3.99058704634833	3.52518984526348	4.27348294367027	1.21832370177272	0.0184573797091842	0.121387584802737
Merged-chr6-66946118-3	chr6	66945989	66946189	+	723.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	49198.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	3.72555024348895	3.48752513270606	3.8252000905977	3.7004464390267	3.24507249687676	3.73764634184332	3.89921432405192	3.86957579492821	0.058084205811312	0.910728769860554	0.966797857002943
Merged-chr1-185205244-4	chr1	185205144	185205344	+	928.787476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 1 of 34)	intron (NM_001163754, intron 1 of 34)	1076.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	4.97313840683987	4.85785615022217	4.33507483993496	4.64666580173258	4.95243312370083	4.82820053441669	4.50639397975293	4.76670210279066	0.120346670327293	0.744027621440278	0.899197603682721
Merged-chr4-106328908-4	chr4	106328810	106329010	+	964.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183225, intron 1 of 67)	MTEb|LTR|ERVL-MaLR	12697.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	5.10740904954306	4.58192434508944	4.74785239957112	5.4332888249374	4.87238066524616	5.0427870717773	4.76639890651695	5.33336244272013	-0.0188815412666266	0.9608821789195	0.986028483619322
Merged-chr3-84334027-4	chr3	84333957	84334157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-29282.0	NM_001271726	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	5.57342047708767	5.67608347105009	5.93748340814346	5.88385735752651	5.5373519071591	5.83124800854606	5.94819652284677	5.48358174167379	-0.122964626591134	0.654657472764779	0.855659697629251
Merged-chr6-34690988-4	chr6	34690895	34691095	+	829.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 3 of 13)	intron (NM_001347100, intron 3 of 13)	-18449.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	3.47418230512833	3.74146525868653	3.59466409637082	3.76962805116416	3.75920020146102	3.8229532769918	3.74092365337745	3.94192188096316	0.459925613482745	0.323649147281443	0.635153643626849
Merged-chr3-88951019-4	chr3	88950902	88951102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022994)	promoter-TSS (NM_022994)	-720.0	NM_001164533	65111.0	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	5.79434555775647	5.98354477395911	5.88740888728498	5.27531845700369	5.66568277939982	6.06138948920081	5.78931765590798	5.69204780913147	0.0983214399255341	0.740503615871923	0.897942160414106
Merged-chr12-113017607-4	chr12	113017503	113017703	+	949.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	3095.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	4.60118493827474	5.18525429860429	4.99327414918833	5.14578116537673	4.92867354747668	5.02505103107634	4.93520452229762	4.80918852400869	-0.17419671333373	0.604337298920542	0.828462598614024
Merged-chr6-97273425-1	chr6	97273325	97273525	+	918.0	f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-20645.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.94542100352191	2.94040818211117	2.88632051488806	2.78691309732352	2.86811995767481	2.86401415310862	2.75015474554065	2.88488521392676	-0.190948585793311	0.752738699365066	0.902644763673069
Merged-chr13-67754845-1	chr13	67754745	67754945	+	1000.0	f1_balb.idr	non-coding (NR_027969, exon 3 of 3)	non-coding (NR_027969, exon 3 of 3)	289.0	NM_001001130	22746.0	Mm.288396	NM_001001130	ENSMUSG00000058331	Zfp85	KRAB19|Rslcan2|Zfp71|Zfp85-rs1	zinc finger protein 85	protein-coding	4.20604855927913	4.27986114643095	4.29126007737855	3.85908911337745	4.04759651792671	4.14263868208996	4.14379634801972	4.01631226265343	-0.178858465990961	0.674060827052472	0.865983965214928
Merged-chr1-127278527-1	chr1	127278427	127278627	+	1000.0	f0_balb.idr	intron (NM_145128, intron 2 of 17)	intron (NM_145128, intron 2 of 17)	73541.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	4.36881227967848	4.36997410250701	4.53181211432259	4.34708428123003	4.31293197782186	4.3594926984233	4.3063894583916	4.49021973268021	-0.0803568785131536	0.828877285564406	0.934306559443661
Merged-chr7-24642658-3	chr7	24642560	24642760	+	646.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	6090.0	NM_133743	72434.0	Mm.281093	NM_133743	ENSMUSG00000057454	Lypd3	2310061G07Rik|C4.4a	Ly6/Plaur domain containing 3	protein-coding	3.75942192882895	3.28868723624406	3.21866634752564	3.44788060403767	3.53479272233726	3.39754424379403	3.33450309465971	3.7576004533465	0.242243014788084	0.652041954091895	0.854348672565858
Merged-chr2-155050916-4	chr2	155050871	155051071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_015770)	TTS (NM_015770)	23526.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	6.37978284515664	6.224852894256	6.53661766713932	5.75181802309131	5.66106850141862	6.12763707520582	5.63489795472998	6.51720238019413	-0.32618175076264	0.307556082812238	0.619876685541157
Merged-chr10-62948772-4	chr10	62948670	62948870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177372, intron 1 of 20)	intron (NM_177372, intron 1 of 20)	1741.0	NM_177372	327762.0	Mm.21492	NM_177372	ENSMUSG00000036875	Dna2	Dna2l|E130315B21Rik	DNA replication helicase/nuclease 2	protein-coding	7.34340981128224	7.87956086627612	6.97038705244646	7.33073955161523	7.28200934422559	7.0931282195116	7.202997079427	7.35961458680991	-0.250461739594818	0.279406536133428	0.591495502480744
Merged-chr6-113646024-2	chr6	113645924	113646124	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 1 of 11)	intron (NM_001113553, intron 1 of 11)	7557.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	2.89783424675574	2.74156999093189	2.7817383978825	2.65233260211361	2.62964419822431	2.75800148048114	2.64523159783126	2.78033716581606	-0.307958516272738	0.630350751854361	0.842792346793424
Merged-chr19-23114649-4	chr19	23114550	23114750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26576.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	5.80003217136731	5.57358138023478	5.53944571287866	6.08310201110582	5.90370068723326	5.82558756338349	5.64807806486671	5.88831783421409	0.0534071679210397	0.848005413939142	0.942597560103288
Merged-chr10-80756390-6	chr10	80756268	80756468	+	942.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199322, intron 1 of 27)	intron (NM_199322, intron 1 of 27)	1165.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	4.33922023647697	4.36678857841762	4.33991099371976	3.66417308339377	4.33470988016968	4.51196950737182	4.27707068743903	4.29385483939852	0.391002558183534	0.376523533653348	0.679217613713612
Merged-chr11-116628995-4	chr11	116628915	116629115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1996.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	5.39752583504882	5.63888465378564	5.1595408202432	5.30866043136827	5.12826145113232	5.30176724324571	4.62152939824023	5.18840985720053	-0.559643451804906	0.0904777193250662	0.328566687876724
Merged-chr8-95137932-3	chr8	95137845	95138045	+	936.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010631, exon 2 of 20)	exon (NM_010631, exon 2 of 20)	4595.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	3.58889451126579	3.46114344306111	3.79352997252599	4.22220869246708	3.5951140816687	3.3926789204406	3.40048033423061	3.69338273554892	-0.886882850805267	0.104868663729683	0.35617915806724
Merged-chr1-143916710-4	chr1	143916607	143916807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87442.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	7.2846805535562	7.1105660233475	7.44409353015363	7.75607010956047	7.2802459879625	7.0425649930704	7.19592019628294	7.13585062555019	-0.355803185951499	0.0953897878430537	0.338017111011138
Merged-chr13-56197678-4	chr13	56197585	56197785	+	984.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18800.0	NM_001168615	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	5.54633708474229	5.47154176276732	4.95057232960978	5.26273394587251	5.93130918117324	5.58282192576478	5.49265170495402	5.6204558103669	0.607877004647073	0.041760374319145	0.206993521023464
Merged-chr4-59823712-4	chr4	59823610	59823810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	18060.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	6.30384107231347	6.22289224652772	6.47311366125608	6.95850264092486	5.62909787481095	5.87432220201437	6.05831350082209	5.92650502158593	-1.02126136778959	0.000229317294505599	0.00407092094709777
Merged-chr18-84588690-2	chr18	84588590	84588790	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 1 of 8)	intron (NM_001033341, intron 1 of 8)	814.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	3.35228422939606	3.33522288195093	3.70776883581309	3.24668990675445	3.27763490654618	3.27685667104059	3.3965484542115	3.56546057275415	-0.108575495300931	0.839358831517709	0.938895262970456
Merged-chr19-7017832-4	chr19	7017696	7017896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362399, intron 2 of 14)	intron (NM_001362399, intron 2 of 14)	1673.0	NM_153795	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	5.65386078850978	5.73819907747791	5.49307806886646	5.53013441660729	5.594938012698	5.5499540404435	5.37701281559913	5.94266695908873	0.047777029341104	0.863767337839192	0.948812409760272
Merged-chr11-16987541-1	chr11	16987441	16987641	+	632.0	f0_balb.idr	exon (NM_019549, exon 6 of 10)	exon (NM_019549, exon 6 of 10)	21177.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	3.69462981073725	3.54769380934064	3.54623821635808	3.4450915032448	3.38719387678909	3.42798278637706	3.3653019156211	3.64550965519475	-0.321618533851819	0.521865335857413	0.781705270333863
Merged-chr3-131237928-4	chr3	131237843	131238043	+	793.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008212, intron 6 of 7)	intron (NM_008212, intron 6 of 7)	34158.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	3.48420775743379	3.76882649213498	3.59912562593475	3.68711647128364	3.71129411709401	3.71533907637735	3.68911874136991	3.59719045596409	0.108883037292317	0.816451568700503	0.929362464563434
Merged-chr7-49741694-3	chr7	49741614	49741814	+	789.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17392.0	NM_001146053	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	3.48139265462253	3.87372712363908	3.65014553742031	3.83669945525276	3.60162674186905	3.71266452624837	3.52729017476366	3.53854618942692	-0.41560241857545	0.392655522621714	0.692059612348422
Merged-chr5-97111740-4	chr5	97111649	97111849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198422)	promoter-TSS (NM_198422)	-153.0	NM_001359913	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	7.72576225707303	7.96103557648228	7.92788067632487	7.49449432779241	7.6970297862064	7.83820777430547	7.78241443599968	7.54909624323498	-0.0812014571481885	0.66828192730314	0.86290502137887
Merged-chr16-49855477-4	chr16	49855385	49855585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010581)	promoter-TSS (NM_010581)	-169.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	8.00086058197784	7.92426227341166	8.65218712548015	8.11444213465805	8.05954871780699	8.26049699106721	8.36802384597094	7.85764174379796	-0.0692624850374852	0.748531164943001	0.900999421474581
Merged-chr1-174434339-2	chr1	174434248	174434448	+	791.5	f0_balb.idr|f1_balb.idr	Intergenic	RLTR22_Mur|LTR|ERVK	3918.0	NM_146761	258756.0	Mm.223188	NM_146761	ENSMUSG00000051509	Olfr414	MOR103-10	olfactory receptor 414	protein-coding	3.5034662702125	3.57077901154714	3.61398536894525	3.94710184522299	3.41709574510563	3.6190652368745	3.69959865268364	3.44348128375671	-0.446569661359917	0.381119820553529	0.683465744746471
Merged-chr11-49986397-3	chr11	49986302	49986502	+	716.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-38929.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	3.98473442226576	4.44715394289325	4.0369049492706	3.88980915636352	4.40615420970347	4.25998935227836	3.96908651952024	4.22234955237869	0.32031704402025	0.461034051410152	0.7429215866116
Merged-chr7-68145010-3	chr7	68144911	68145111	+	890.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	119222.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	3.66252632760095	3.75286578908215	3.76819928026475	3.91502030954291	3.63356108244505	3.53773689478687	3.84867777501099	3.86303781517089	-0.182554041863617	0.696762962441713	0.877402190847628
Merged-chr16-94246150-4	chr16	94246038	94246238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	ORR1D2|LTR|ERVL-MaLR	44153.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	6.53050649882533	6.57392301292615	5.96234221958293	6.35500699610656	6.3784724707768	6.48373960443262	6.55960135579962	6.34006676782519	0.0920578576298597	0.697861406277056	0.878035052717631
Merged-chr16-33158588-4	chr16	33158473	33158673	+	916.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26498.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	4.39693046786962	4.65255029209575	4.25641819044178	4.64263932283111	4.67264189550937	4.57111650598429	4.37820562604011	4.480998120425	0.0540974017722037	0.885531087356094	0.957045685546015
Merged-chr12-100090256-2	chr12	100090156	100090356	+	671.56665	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-22075.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	3.11007636225452	3.03650561583542	2.93496482322919	2.57267601051782	2.84264175657524	2.84098984877476	2.8610236834706	3.21346378235221	0.10322357624198	0.874722250198905	0.952925927223413
Merged-chr10-68239241-1	chr10	68239141	68239341	+	1000.0	f0_balb.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	39485.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	5.38104388438373	5.35610714013974	5.2110029666414	4.98821805042885	5.53572502876042	4.78167979102052	4.87840431583681	4.89831608735965	-0.28720351552199	0.423413678103454	0.715311701020053
Merged-chr17-56290342-7	chr17	56290198	56290398	+	984.5238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025836, intron 1 of 7)	intron (NM_025836, intron 1 of 7)	213.0	NM_025836	66905.0	Mm.311696	NM_025836	ENSMUSG00000024197	Plin3	1300012C15Rik|M6prbp1|Tip47	perilipin 3	protein-coding	4.13623272366942	4.42013005754306	3.93474762932699	4.09198759156125	4.11532922431332	4.30864697957989	3.97210910845395	4.2673207379948	0.0294847852867085	0.943911772129597	0.979866422670424
Merged-chr8-71725709-3	chr8	71725577	71725777	+	741.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028715)	promoter-TSS (NM_028715)	4.0	NR_131256	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	3.31696980713928	3.04551414878655	2.95149050250989	3.23169410236779	3.29358476230233	3.19476452876346	3.1945952228888	3.36747346840071	0.436713816971461	0.433260743674819	0.722830392839943
Merged-chr13-111809530-8	chr13	111809413	111809613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011945)	promoter-TSS (NM_011945)	-520.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	4.48637484638468	4.37987338357506	4.69399962773343	4.71475740316883	4.66386629262267	4.78933365249103	4.42180774311062	5.16256695395937	0.425852080421489	0.262601844651434	0.574423377395341
Merged-chr19-9936748-4	chr19	9936639	9936839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37206.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	7.07988797345675	6.81145715309127	6.91626859731344	7.30573133597692	6.46975116638693	6.55257733713329	6.36011132840963	6.22604876845936	-0.920641987792256	4.05137112530845e-05	0.000943318761296467
Merged-chr16-33591898-4	chr16	33591809	33592009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 5 of 11)	intron (NM_001083902, intron 5 of 11)	73314.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	6.42791459903133	6.3769459468423	6.30167652408305	6.71518532060584	6.22583359020453	6.33782615549894	6.70030301216366	6.40704093478639	-0.0823528088949633	0.730461974873908	0.893114485872438
Merged-chr5-146904608-4	chr5	146904510	146904710	+	781.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44047.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	3.48242536893032	3.20231567797403	3.2394529409787	3.58887996487224	3.52561578025033	3.75757535196513	3.5745404241026	3.58740297117936	0.681952469037358	0.192191660386563	0.491785965224689
Merged-chr13-75342166-3	chr13	75342058	75342258	+	648.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	252301.0	NM_013628	18548.0	Mm.1333	NM_013628	ENSMUSG00000021587	Pcsk1	Nec-1|Nec1|PC1|PC3|Phpp-1|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding	3.74657973814301	3.36172633569816	3.79513824751093	3.78293326566642	3.50786574034374	3.6509713354916	3.57727042141956	3.74490217333253	-0.209505402461172	0.670358323944583	0.864018744048012
Merged-chr5-149006885-4	chr5	149006794	149006994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040429)	promoter-TSS (NR_040429)	-68.0	NR_040429	100503307.0	Mm.188008	NR_040429	ENSMUSG00000086610	Gm15408	-	predicted gene 15408	ncRNA	6.88300513352486	6.58543064216389	6.68437113004296	6.75039953920279	7.07450760598692	7.08637980776324	6.95022136997187	6.56645203197252	0.295451571226041	0.170438479611887	0.463605951555124
Merged-chr9-118632560-4	chr9	118632456	118632656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 3 of 27)	intron (NM_133721, intron 3 of 27)	25847.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.66925315516957	5.73354097220131	6.01767834587165	5.99738290308137	5.67675649844104	5.79206829858897	5.7913680685245	5.9724414942492	-0.107203367420199	0.678675666915294	0.8681208945003
Merged-chr6-124829099-4	chr6	124829018	124829218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013700, intron 1 of 19)	intron (NM_013700, intron 1 of 19)	366.0	NM_001326594	22225.0	Mm.3571	NM_013700	ENSMUSG00000038429	Usp5	AA407472|ISOT|ISOT-1|Ucht	ubiquitin specific peptidase 5 (isopeptidase T)	protein-coding	8.36725714043849	8.55751786531446	8.34122077650997	8.3204540573792	8.36411216360299	8.68964671382438	8.63063460195549	8.38463058247627	0.155028177901628	0.345260429608523	0.65358081218864
Merged-chr15-95800309-4	chr15	95800196	95800396	+	899.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	Lx8|LINE|L1	9453.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	4.53951688994512	4.11642887039647	4.24086332095021	4.52522574066102	4.5068235693477	4.46204121233829	4.26953220355185	4.53727211461905	0.166874363252589	0.668047796031633	0.862837936034118
Merged-chr16-87717457-4	chr16	87717341	87717541	+	823.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 2 of 4)	L1MD2|LINE|L1	18487.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	3.79365065438942	3.83780742588751	3.84789287597547	3.97659010993135	4.16322898398645	4.07120295905422	3.66637837830237	4.16903482129235	0.444180360185465	0.321446654581218	0.63315055191495
Merged-chr18-56479643-3	chr18	56479607	56479807	+	712.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360917, intron 5 of 13)	intron (NM_001360917, intron 5 of 13)	47575.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	3.74467240794057	3.93171894323129	3.57641515315889	4.08548767262034	3.6291268954203	3.49809789674125	3.78125166296622	4.06685562096696	-0.291682400075161	0.560878607699865	0.804760543341901
Merged-chr7-43562893-4	chr7	43562794	43562994	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008549, intron 1 of 4)	intron (NM_001008549, intron 1 of 4)	524.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	3.88639692427699	4.55107271446895	4.44557072762292	4.03586802045923	4.37022570205294	4.39838635233154	4.24939520724804	5.02696274014878	0.673493289178451	0.135249005453959	0.409381349004647
Merged-chr8-117308462-4	chr8	117308346	117308546	+	968.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-40724.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	5.77805081069277	5.68692804194603	5.77907024963471	6.05869943240106	5.3653057166137	5.15653277446624	5.65453918824787	5.46328804634542	-0.718855498792734	0.0110010207489878	0.0844978586265457
Merged-chr10-80622491-4	chr10	80622367	80622567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134002)	promoter-TSS (NM_134002)	-313.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	8.27881693549525	8.48839649106922	8.24530512709209	7.98076036245149	8.50749480223231	8.66844992848788	8.46082323252356	8.22805273646647	0.278854902641384	0.127554745776667	0.397369460390093
Merged-chr1-80408728-4	chr1	80408624	80408824	+	871.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37208.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	4.04611790271888	3.315891523902	3.79355115527159	4.07751992530537	4.06167106614538	4.30484766927303	4.27554117411071	3.67506927263762	0.674900543961981	0.20726302269926	0.511181071672855
Merged-chr4-132732545-4	chr4	132732444	132732644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201368)	promoter-TSS (NM_201368)	2.0	NM_201368	381560.0	Mm.44558	NM_201368	ENSMUSG00000037752	Xkr8	4931440N07Rik|AI597014|Gm1031|XRG8|mXkr8	X-linked Kx blood group related 8	protein-coding	7.79896677071352	7.53856393005528	7.51108638085755	7.5948507714536	7.55972765529415	7.66014626418796	7.4171777736554	7.51517037734261	-0.0968469643581112	0.58044178971041	0.815718435955212
Merged-chr6-128799658-4	chr6	128799550	128799750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11009.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	5.797196077188	6.13650336095228	6.10912988210855	5.98875593718622	6.53457742376472	6.49868814306874	6.19853464070345	6.60553911871397	0.688309122775686	0.00327855488515114	0.0342126166500767
Merged-chr3-79438438-4	chr3	79438354	79438554	+	958.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142953, intron 3 of 4)	intron (NM_001142953, intron 3 of 4)	93078.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	5.5365791773912	5.45483961336373	5.28452667937731	5.80374208719397	5.19759728815343	4.93924001599881	5.02175376157546	5.53362483653814	-0.630692237458194	0.0482576875457571	0.226713348413929
Merged-chr6-65453670-3	chr6	65453562	65453762	+	710.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175524, intron 4 of 5)	intron (NM_175524, intron 4 of 5)	72368.0	NM_175524	243407.0	Mm.389758	NM_175524	ENSMUSG00000029917	C130060K24Rik	-	RIKEN cDNA C130060K24 gene	protein-coding	3.58061131085635	3.10961845731641	3.38450043994172	3.30092002002826	3.38388345640576	3.1965229311733	3.2611493771881	3.08513493496914	-0.395147202920863	0.48009151331838	0.755678709554239
Merged-chr1-57574716-1	chr1	57574616	57574816	+	552.0	f0_balb.idr	Intergenic	Intergenic	-168042.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	3.5286443031513	3.45101081270416	3.41353836224517	3.84753508067421	3.35486800780199	3.69999567042862	3.7625214559843	3.41184719086997	-0.0689416023303628	0.896176172954456	0.961015180097519
Merged-chr7-143024513-4	chr7	143024379	143024579	+	703.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110354, intron 4 of 4)	Lx7|LINE|L1	18820.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	3.593332277315	3.51965542555345	3.65018813587198	3.8554374520367	3.78449479935999	4.02157623947176	3.88290609392921	3.5331241909801	0.418724566982412	0.388156187890136	0.688854325766231
Merged-chr10-75504958-4	chr10	75504841	75505041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HERVL40-int|LTR|ERVL	12440.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	6.75582654724404	6.3971393402587	6.88947047577818	6.94579880046664	6.61301763937307	6.50617517116181	6.52722551502517	6.41811975357841	-0.358861486048636	0.111484419205903	0.368917290310693
Merged-chr17-57335872-4	chr17	57335782	57335982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22804.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	5.54829895716786	5.74666414814611	5.40034305674215	5.38386060133085	5.96084731472883	5.95366734108241	5.65382311455189	5.75228562958861	0.53320190102744	0.0467743802641587	0.222386855442025
Merged-chr8-70543806-2	chr8	70543706	70543906	+	838.5	f0_balb.idr|f1_balb.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	4131.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	3.51996063670784	3.48064315827965	3.35234397481173	3.53424757737859	3.48251600587963	3.33757171248219	3.45346911304238	3.61890998232434	-0.00037696163963994	0.999397905457379	0.999731947458016
Merged-chr14-37109543-4	chr14	37109419	37109619	+	980.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206684, intron 1 of 2)	intron (NM_001206684, intron 1 of 2)	582.0	NM_001206684	70045.0	Mm.271619	NM_001206684	ENSMUSG00000096001	2610528A11Rik	AW494830|Gpr15l	RIKEN cDNA 2610528A11 gene	protein-coding	5.23422893117281	4.99640017873851	5.58598214403484	5.43530752984089	5.26032528820109	4.93224860726649	5.11308485895072	5.37816333574473	-0.270695803044615	0.396027232853954	0.6950249619634
Merged-chr9-65001635-3	chr9	65001534	65001734	+	812.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021345, intron 5 of 10)	intron (NM_021345, intron 5 of 10)	20083.0	NM_021345	57874.0	Mm.308180	NM_021345	ENSMUSG00000033629	Hacd3	4930523M17Rik|AW742319|B-ind1|Hcad3|Hspc121|Ptplad1	3-hydroxyacyl-CoA dehydratase 3	protein-coding	3.39147340273716	3.50440414513194	3.50156859455365	3.63795800400825	3.40783501926605	3.24987637178562	3.4346903361123	3.44606250816454	-0.451977222631912	0.376197221301938	0.679024775327771
Merged-chr8-4325187-4	chr8	4325099	4325299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010485)	promoter-TSS (NM_010485)	-11.0	NR_033527	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	8.5537816448584	8.58779158792032	8.37196241837033	8.62132651875336	8.59093522984403	8.60821364044633	8.88469512338816	8.35561590635451	0.105286482240781	0.538597730037284	0.791674709887948
Merged-chr17-56339035-2	chr17	56338935	56339135	+	950.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172132, intron 1 of 22)	intron (NM_172132, intron 1 of 22)	12985.0	NM_001357909	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	2.61362652017725	2.60715140075002	2.53815255435293	2.66253618012659	2.65739196146443	3.0522457670872	3.23015297801016	2.87921905542013	1.6309829908093	0.0150666959504676	0.105150735469981
Merged-chr17-47505056-4	chr17	47504880	47505080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081636)	promoter-TSS (NM_001081636)	-71.0	NM_001081636	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	5.41177954289689	5.50387093045015	5.46795179816774	5.59969543192097	5.15807120179822	5.34058995992085	5.10449073558424	5.35122687877364	-0.482614133984537	0.0883357332728426	0.324256054800045
Merged-chr6-34944659-4	chr6	34944552	34944752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001025573)	TTS (NM_001025573)	23704.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	5.38808893486846	5.99518944603034	5.62934640603707	5.69492702559604	5.94024295552405	5.95902791901031	5.73028446934152	6.06115016295597	0.368344169488421	0.171919992837667	0.465147224045625
Merged-chr11-98546001-3	chr11	98545908	98546108	+	648.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011771)	promoter-TSS (NM_011771)	23.0	NM_011771	22780.0	Mm.133367	NM_011771	ENSMUSG00000018168	Ikzf3	5830411O07Rik|Aiolos|Zfpn1a3|Znfn1a3	IKAROS family zinc finger 3	protein-coding	3.67261259205593	3.72894983953406	3.57002766647812	3.24858859903001	3.49819306424463	3.57438346145695	3.25948849952469	3.76617291416168	-0.0768490745397269	0.885212509159456	0.956936716928815
Merged-chr4-62407959-4	chr4	62407850	62408050	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027297)	promoter-TSS (NM_027297)	673.0	NM_139291	66440.0	Mm.109930	NM_139291	ENSMUSG00000066149	Cdc26	2010012C09Rik	cell division cycle 26	protein-coding	4.65948496287176	4.25477087186388	4.92449050482512	4.780446675945	4.98133823997666	5.25437859422803	4.79476053152886	4.92112892487534	0.638368954043877	0.0785908423612704	0.303314644966721
Merged-chr2-11766702-4	chr2	11766601	11766801	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348235, intron 3 of 20)	intron (NM_001348235, intron 3 of 20)	10884.0	NM_001348234	50755.0	Mm.24088	NM_015792	ENSMUSG00000058594	Fbxo18	AU015756|Fbh1|Fbx18	F-box protein 18	protein-coding	5.57050091348951	5.18033164754647	5.64857669517286	6.19373426860979	5.4077457964405	5.27726317294239	5.61985082030745	5.3978308310078	-0.493182938399257	0.140227728317786	0.416336910539243
Merged-chr2-83767103-4	chr2	83766970	83767170	+	908.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 8 of 29)	intron (NM_008402, intron 8 of 29)	42673.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	3.96215926412346	3.66765483451388	3.74251549789955	4.16254682168188	4.39135639447716	4.23138723627123	3.94626154011007	4.19145288009504	0.748983586745251	0.103028763505858	0.352537465512136
Merged-chr6-29712281-2	chr6	29712181	29712381	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301407, intron 4 of 7)	intron (NM_001301407, intron 4 of 7)	18067.0	NM_146173	232670.0	Mm.225289	NM_146173	ENSMUSG00000001763	Tspan33	1300010A20Rik|Pen	tetraspanin 33	protein-coding	2.78948425239409	2.51490226698001	2.57422430447302	2.61092345876728	2.83796617144453	2.96581959933369	3.07255426495373	3.23369131620063	1.86436429273257	0.00395556240247931	0.0397168819644625
Merged-chr9-66213011-3	chr9	66212904	66213104	+	954.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010019, intron 2 of 11)	intron (NM_010019, intron 2 of 11)	54778.0	NM_010019	13143.0	Mm.304472	NM_010019	ENSMUSG00000032380	Dapk2	-	death-associated protein kinase 2	protein-coding	3.90553092194638	4.9698131549326	3.96172027243784	3.48938298107609	4.5254506259754	4.29368620816652	3.99779874422087	3.84595724908648	-0.0631693274188066	0.912055755384843	0.967118042908353
Merged-chr14-120434359-1	chr14	120434259	120434459	+	629.0	f0_balb.idr	Intergenic	Intergenic	-44102.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	3.43035396172779	3.79852440340591	4.08984258041618	3.45418277317689	3.46702501938264	3.66644735018273	3.4183606066316	3.3663225244748	-0.742653715108085	0.167146028481033	0.458628702102904
Merged-chr3-9403019-4	chr3	9402928	9403128	+	889.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015499)	promoter-TSS (NR_015499)	-50.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	4.79706416539192	4.86588928905985	4.63690631090344	5.33179558244067	4.8297490670021	4.77092611992633	4.65763490282995	4.93744419821016	-0.316910485214202	0.386301232169823	0.687552275421561
Merged-chr15-102698366-2	chr15	102698266	102698466	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23812.0	NM_026192	67488.0	Mm.71682	NM_026192	ENSMUSG00000023055	Calcoco1	1810009B06Rik|Cocoa|Gcap11|mKIAA1536	calcium binding and coiled coil domain 1	protein-coding	3.11425285919852	3.15033924782551	2.99328125122449	2.97467076771083	3.15040108075804	3.10156853032683	3.10304629928538	3.05388186165687	0.199293169463252	0.721305326084532	0.888753092785481
Merged-chr11-76581429-4	chr11	76581381	76581581	+	953.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-3742.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	4.75792099691138	4.41093422762448	4.72463014958995	3.84979518882545	4.83163054075582	4.54465093370059	4.55624575713159	4.00023754808048	0.0927050844557587	0.843983489692719	0.94088019607581
Merged-chr3-117979336-3	chr3	117979236	117979436	+	763.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110400.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	3.49459462365993	3.64661389087177	3.75632279003694	3.98534577507195	3.34020104694336	3.72341448421308	3.53790514303699	3.23938373255576	-0.889976352327899	0.0943081208442571	0.335973860539208
Merged-chr3-152782225-4	chr3	152782132	152782332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025662, intron 10 of 10)	intron (NM_025662, intron 10 of 10)	68132.0	NM_025662	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	5.16099212012092	5.2699286814939	5.65426624810214	6.00613418199862	5.2186552361185	5.47236906698329	5.23781704919247	5.49750447520917	-0.400717851615038	0.228753988091875	0.537570739159152
Merged-chr7-126776883-4	chr7	126776785	126776985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026875)	promoter-TSS (NM_026875)	-90.0	NM_026875	66090.0	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee like 3	protein-coding	7.85196399866676	8.07544303634657	7.83817020832379	7.95187390003241	7.88732890412202	7.87940858809724	8.05933071731172	7.78645339973422	-0.0375954345949295	0.821133204261803	0.93149474715163
Merged-chr8-18924633-2	chr8	18924549	18924749	+	759.333313	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	26222.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	3.53617954552452	3.52037172428816	3.7093835239616	3.29782698388039	3.8895425391205	3.9354780331979	4.02174653185265	3.99590626427592	1.37519466705758	0.00297468793909096	0.031782544703776
Merged-chr4-123921949-6	chr4	123921896	123922096	+	956.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017475, intron 3 of 6)	intron (NM_017475, intron 3 of 6)	4563.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	3.73507156025105	3.69461129728109	4.15735998034766	3.66679546784193	3.81079862554527	4.063203194129	3.8260296878126	3.8898393056594	0.22542243369282	0.624935863780117	0.839659374707287
Merged-chr1-131146510-4	chr1	131146413	131146613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-6694.0	NM_001136070	16865.0	Mm.276294	NM_010709	ENSMUSG00000026427	Eif2d	D1Ertd5e|Lgtn	eukaryotic translation initiation factor 2D	protein-coding	5.94097861198457	5.72258337417134	5.82668440474662	5.99094749748321	6.01621130559219	5.70784316941116	6.05639867290057	5.98108699372595	0.112379135777134	0.652700678821464	0.854764223296605
Merged-chr16-30821342-2	chr16	30821242	30821442	+	929.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	221619.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	3.60292664554012	3.31216803677817	3.1677195846567	2.68750667529649	2.93003240207748	3.72639069547497	3.02243926262127	3.40151947154507	0.242223100607985	0.721001288590528	0.888599070550701
Merged-chr2-48827565-3	chr2	48827463	48827663	+	714.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007396, intron 1 of 10)	intron (NM_007396, intron 1 of 10)	13454.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	3.6493820841041	3.59811860330513	3.48894405031198	3.56565850601917	3.7795442680932	3.65994697945559	3.53124120529376	3.36863335383421	0.0815424321614937	0.868127197790029	0.95061428059965
Merged-chr17-35194445-3	chr17	35194356	35194556	+	778.1904910000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105939)	promoter-TSS (NR_105939)	-51.0	NM_008518	16994.0	Mm.1715	NM_008518	ENSMUSG00000024399	Ltb	AI662801|LTbeta|Tnfc|Tnfsf3|Tnlg1c|p33	lymphotoxin B	protein-coding	3.18859038634239	3.31950081025553	3.07750597198014	3.06740233186272	2.92260747823717	2.9274258987891	3.00716850623003	2.74711659116236	-1.11820050609971	0.0679904561832456	0.278339718218625
Merged-chr8-36173217-2	chr8	36173100	36173300	+	804.375	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	17190.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	3.3842167067161	3.1091624129238	3.38473157141771	3.53358872320835	2.80848432051621	2.78486414184565	2.97033709097472	3.22457703346999	-1.71084345343176	0.0080824521055853	0.0677063502910975
Merged-chr15-78772592-4	chr15	78772481	78772681	+	711.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008595, intron 1 of 7)	intron (NM_008595, intron 1 of 7)	864.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	3.19588706438698	2.86245459695838	3.13642256052197	3.08251817318713	3.31295108803048	3.24784725922785	3.24074235267588	3.40920311214157	0.878382282134082	0.111372888395108	0.368698618619051
Merged-chr17-88065390-2	chr17	88065289	88065489	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001081034)	promoter-TSS (NM_001081034)	-98.0	NM_001081034	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	5.4303541617397	5.72782346750428	5.75570482203894	5.52362250897128	5.70249633004797	5.95273451392494	5.52104221893684	5.77521741333989	0.220291622022455	0.412599462419581	0.707689754826944
Merged-chr8-46851787-4	chr8	46851694	46851894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112049.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	7.46091570468343	7.57487121674253	7.16464085037347	7.43715089772775	7.49638478882942	7.49948833009374	7.40628262207894	7.616602189306	0.112936004807983	0.535488526329375	0.789765706629649
Merged-chr3-27439859-4	chr3	27439754	27439954	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 24 of 26)	intron (NM_001356953, intron 24 of 26)	68503.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	5.64684490185837	5.60438657009063	6.0571927258281	6.09091421845301	5.46756133526017	5.5694011746908	5.5935537022303	5.19355990476104	-0.708598275590516	0.0149524533943936	0.104579019373051
Merged-chr11-81954558-4	chr11	81954411	81954611	+	886.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034013, intron 1 of 9)	intron (NM_001034013, intron 1 of 9)	13885.0	NM_001034013	11418.0	Mm.234998	NM_007384	ENSMUSG00000020704	Asic2	ACIC2|Accn1|BNC1|BNaC1|BNaC1a|Mdeg	acid-sensing (proton-gated) ion channel 2	protein-coding	3.73254219300728	3.9220277545309	4.10118452689803	3.49100034232132	3.70445077202343	3.68046474715698	3.66418781207992	3.88154153027535	-0.251352710303255	0.607844535322054	0.830283203337722
Merged-chr18-57957751-3	chr18	57957606	57957806	+	680.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79028.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	2.93462427032764	2.78463500166943	2.73714675018486	2.94657255794147	2.87999211455359	3.1042738560847	3.09371066168563	2.93352254767908	0.612470502086971	0.309837653836218	0.62199416660177
Merged-chr6-83455496-4	chr6	83455389	83455589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 1 of 11)	intron (NM_001347313, intron 1 of 11)	903.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	6.7662926605341	6.53674983243338	6.25001942560927	6.44463722479393	6.70520390804587	6.75168342697144	6.47694156254881	6.692375700653	0.221366602282677	0.31610301734652	0.62798003493561
Merged-chr16-33756631-4	chr16	33756483	33756683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 12 of 14)	intron (NM_175256, intron 12 of 14)	-37454.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	5.30822025985557	5.4432859177671	5.30911516197016	5.63029294419034	5.35242972854091	5.48442545161667	5.58775994675046	5.61208590018531	0.102280367064258	0.718504704849851	0.887579709565285
Merged-chr3-152912379-4	chr3	152912342	152912542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	69765.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	6.29574902702075	5.37569122450107	6.2609435029818	6.46923298384017	6.35837840779461	5.84804890465298	6.11498647856081	6.16192476721075	-0.0480393555180698	0.877398222805151	0.954155319099932
Merged-chr7-80775013-4	chr7	80774913	80775113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	28318.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	5.93394746098946	6.19642057264997	5.49431658260524	5.68249745349854	6.29671888628189	6.30473020687846	6.05731486832814	6.54535352133472	0.715036383983579	0.00825047996893209	0.0685812114572716
Merged-chr17-43334334-4	chr17	43334231	43334431	+	915.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26100.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	3.94502589237949	4.26945574484294	4.35960208468692	4.28530854690019	5.22420451118635	5.17243344151179	5.37228624709102	5.0269495840452	2.01794179316199	3.03297423639794e-08	1.46065002146528e-06
Merged-chr3-95676589-1	chr3	95676489	95676689	+	854.0	f0_balb.idr	3' UTR (NM_144899, exon 18 of 18)	3' UTR (NM_144899, exon 18 of 18)	11328.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	3.64757766149198	3.82636254399019	3.42259288629229	3.59902478453354	3.39474214345404	3.60008366016834	3.06796144754756	4.04168331157769	-0.174475296172502	0.768844823431922	0.909486234246174
Merged-chr2-16184138-2	chr2	16184038	16184238	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 35 of 38)	MTD|LTR|ERVL-MaLR	-172166.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	3.04928105108412	2.83626936156047	2.93865258336502	2.76594868130037	2.72072758050136	2.85638741747674	2.86861290819584	2.81494190488585	-0.376483525048024	0.54324221671454	0.794367638237739
Merged-chr1-191724851-4	chr1	191724729	191724929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134829, intron 2 of 7)	intron (NM_001134829, intron 2 of 7)	6434.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	5.66334017149782	5.20423371519914	5.27503902202293	5.75958795057254	5.27605348769249	5.51419336473672	5.56215788791771	5.45289081969645	-0.111373686375235	0.713064690495934	0.885224494293465
Merged-chr16-24973216-4	chr16	24973139	24973339	+	865.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 11 of 12)	intron (NM_178665, intron 11 of 12)	-86400.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	4.07819405952314	3.73873439216514	4.16636464076107	4.5147665170999	3.86792316815698	3.9506283275091	3.75908751733684	3.8811491928187	-0.824374693192209	0.0813312349053548	0.309417833291006
Merged-chr1-191907655-4	chr1	191907573	191907773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030669)	promoter-TSS (NR_030669)	-146.0	NR_030669	98736.0	Mm.379232	NM_001024489	ENSMUSG00000055833	1700034H15Rik	4930557M11Rik|BB016121	RIKEN cDNA 1700034H15 gene	ncRNA	5.07521397239739	5.26789327774599	5.10641765385632	5.14498720757343	4.74066806398248	4.63842932898186	4.38690650214535	4.54877399603404	-1.14532894382366	0.000768875624712993	0.0108976101337009
Merged-chr5-52190590-4	chr5	52190488	52190688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007839)	promoter-TSS (NM_007839)	-42.0	NM_001042620	13204.0	Mm.993	NM_007839	ENSMUSG00000029169	Dhx15	DBP1|DEAH9|Ddx15|HRH2|mDEAH9	DEAH (Asp-Glu-Ala-His) box polypeptide 15	protein-coding	7.86137823441188	7.93318880850956	7.67696930269205	8.02885248625675	8.0116703672474	7.8194455658227	8.33366852156743	7.98558599071819	0.211625554174284	0.253776096304103	0.565032649092237
Merged-chr3-96767251-4	chr3	96767143	96767343	+	947.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026406, intron 3 of 8)	ORR1D1-int|LTR|ERVL-MaLR	39632.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	4.89675209846299	5.11717200762009	4.8611259366348	4.34628411840532	5.165305989345	4.79731680980573	4.97650670819172	5.06208246867519	0.384188020563893	0.294646530418172	0.606767041413815
Merged-chr8-94919666-5	chr8	94919542	94919742	+	816.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1544.0	NM_001033533	234582.0	Mm.277871	NM_001033533	ENSMUSG00000063605	Ccdc102a	BC027663|Gm586	coiled-coil domain containing 102A	protein-coding	3.31756058469423	3.61200130589651	3.55893260070057	3.60860179212466	3.7245996575489	3.67491728939627	3.54520290354128	3.75981713625095	0.448875766218758	0.353701180972385	0.66051560970873
Merged-chr3-88296979-4	chr3	88296862	88297062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009836)	promoter-TSS (NM_009836)	37.0	NM_001357024	76927.0	Mm.273330	NM_029801	ENSMUSG00000010538	Tsacc	1700021C14Rik|SIP	TSSK6 activating co-chaperone	protein-coding	7.96468395532121	8.10505173891926	7.63534498710977	7.79861967044844	8.02549082817605	8.15729030564867	7.98179667360966	8.06669388257121	0.220639763590133	0.207866045973272	0.511999387660666
Merged-chr15-59680842-5	chr15	59680840	59681040	+	992.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32286.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	5.04295480852379	5.07976632064619	5.07549716658584	4.7935551749222	4.72978454133538	4.80915501458934	4.84907750901335	5.0078890269721	-0.285032592400198	0.385254519870999	0.686692566479463
Merged-chr11-96890110-4	chr11	96890018	96890218	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26396.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	4.84223086759908	4.88847545195272	4.91837312025779	5.04508228769397	5.29313264719531	4.9402770883002	4.93073624667013	5.23620555248244	0.355073794123483	0.265939053595143	0.577640399629194
Merged-chr16-16099957-4	chr16	16099841	16100041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 5 of 18)	intron (NM_001355731, intron 5 of 18)	46910.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	6.68146022274129	6.28253674359274	6.65423905424992	6.84354080505756	6.26990373575446	6.14331847591436	6.36744767914874	5.98376385526963	-0.64761925534387	0.00741198341464089	0.0634659457904282
Merged-chr18-38352254-4	chr18	38352153	38352353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-13260.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	6.57779400617564	6.15124590908375	6.01580715736719	6.13536793055225	6.32431791226282	6.3424168267895	6.32323359750959	6.33350497479215	0.151481298245775	0.522527454123034	0.781971587334536
Merged-chr2-164442572-2	chr2	164442447	164442647	+	793.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011521, intron 1 of 4)	intron (NM_011521, intron 1 of 4)	641.0	NM_011521	20971.0	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	3.89727168278585	4.67322337719981	3.51813376737534	3.24847382729342	4.44100660081154	4.71247259052902	3.8811606637085	3.83898364514894	0.703770846025253	0.443833394108039	0.730374466158415
Merged-chr13-112344623-4	chr13	112344511	112344711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001168405)	TTS (NM_001168405)	56093.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	7.27183254093983	7.14046300694085	7.82996531742996	7.34628151341558	6.89588908568166	6.97276646452975	7.18335472233501	6.92014647463808	-0.577951790592447	0.0088370344288708	0.0721674246916699
Merged-chr10-8059739-4	chr10	8059632	8059832	+	947.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103609.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	6.03278337860236	5.54326569242824	6.14619872475905	6.39353585346122	4.9333548614692	5.27748204232554	5.64426640277269	5.74506091673513	-1.05931577869643	0.0015760989844282	0.0194495751755574
Merged-chr16-97962295-4	chr16	97962174	97962374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175428, intron 1 of 2)	CpG	348.0	NM_001081685	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	8.5038931146938	8.26307205706789	8.23950701866903	8.44990506022852	8.73845636382588	8.49916531662149	8.89469626837932	8.37128808876559	0.344722278855604	0.0527481012874907	0.239503944910934
Merged-chr15-6571081-4	chr15	6570962	6571162	+	975.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8785.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	4.5404905582482	5.19549997139687	4.63283414419556	4.90225407340591	5.1059442640375	5.08440139492884	4.92239093246363	5.04304226028095	0.37053990212503	0.282584792653854	0.594758629298828
Merged-chr14-20702000-3	chr14	20701883	20702083	+	813.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_029446)	TTS (NR_029446)	-1044.0	NM_025366	66121.0	Mm.246996	NM_025366	ENSMUSG00000063787	Chchd1	1110001O19Rik|2400010G13Rik|MRP-S37	coiled-coil-helix-coiled-coil-helix domain containing 1	protein-coding	3.63383883131832	4.33851751996666	4.08086401424449	3.29664080591572	4.17917679705445	3.69443759556326	3.56067502915342	3.57208230651693	-0.334399772688453	0.564531994296029	0.806797378143786
Merged-chr7-98771336-3	chr7	98771218	98771418	+	807.866638	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63794.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	3.30375195173124	3.19906711488376	3.09474791077781	3.3056227988197	3.80273178046796	3.60379884891269	3.85535105144103	3.82898400728051	1.76989569340916	0.000636132867231074	0.00934943245026649
Merged-chr10-52273202-4	chr10	52273088	52273288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025705, intron 2 of 10)	intron (NM_025705, intron 2 of 10)	39569.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	6.20655645726549	5.97611169263345	5.99806972077353	6.28158883281739	5.20457205037194	5.61298666644943	5.63924486534755	5.71664333240179	-0.958673639465126	0.000417280318587112	0.00665358328779392
Merged-chr11-50225950-6	chr11	50225923	50226123	+	909.513916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145926, intron 1 of 14)	intron (NM_145926, intron 1 of 14)	688.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	3.6141314627802	3.92383260367813	3.81714357781114	3.69065442452952	3.46802279543518	3.61508729088347	3.80068582647765	3.49882311376209	-0.526073017086799	0.277838666419101	0.589858344900601
Merged-chr14-40985840-4	chr14	40985737	40985937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	-18941.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	6.73787936359612	6.9707475893961	6.86519951554623	7.0740496056996	6.84978152636419	6.82436455079113	6.49781786422428	6.61049799080507	-0.310281096810507	0.142018854546765	0.419334764888857
Merged-chr18-75906118-2	chr18	75906001	75906201	+	677.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	85923.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	2.71560140424487	2.57327877125734	2.79465843013799	2.40759296795872	3.37467247435874	3.52859055077496	3.52710078957409	3.24793105025806	3.96153768380601	7.05756112255409e-09	3.87915168449635e-07
Merged-chr5-121837790-4	chr5	121837708	121837908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008507)	promoter-TSS (NM_008507)	-949.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	5.76908831977889	6.178578699473	6.50229719384669	5.77420026207481	5.73424645272135	5.70365247695738	5.3710741768254	5.57909414578336	-0.771121422010686	0.00997978535805036	0.0788058741338016
Merged-chr2-181837886-4	chr2	181837770	181837970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153594)	promoter-TSS (NM_153594)	16.0	NM_001291211	245867.0	Mm.491085	NM_153594	ENSMUSG00000027589	Pcmtd2	5330414D10Rik|AI314201	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding	5.72487531616144	5.81660793123878	5.67546453395638	5.83257597778628	5.6478901414912	5.53457670773456	5.72121731521366	5.79378590926835	-0.154983513888584	0.542699187319102	0.793917205662524
Merged-chr7-27493249-4	chr7	27493164	27493364	+	824.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6060.0	NM_198048	19153.0	Mm.10119	NM_019412	ENSMUSG00000053198	Prx	L-Periaxin	periaxin	protein-coding	3.84600168749067	3.5563508172315	3.98631928675924	3.63562548262418	3.76934600542459	3.96806293526779	3.56074772050416	3.98378643815967	0.208293200920271	0.661521880375996	0.859445962058208
Merged-chr4-117289344-7	chr4	117289250	117289450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310731, exon 1 of 11)	5' UTR (NM_001310731, exon 1 of 11)	105.0	NM_001310730	66743.0	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	5.25353542941807	5.68003793500124	5.50857536904195	5.34712230605385	5.70422707847768	6.03212117353151	5.69149547808921	5.9596203552589	0.662265201034126	0.0158336496396885	0.108964840733191
Merged-chr5-17975424-4	chr5	17975323	17975523	+	920.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 1 of 7)	intron (NM_001081143, intron 1 of 7)	12853.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	4.29727517227487	5.01834982695781	4.80638338161845	4.95360943246353	4.36215954790486	4.75162243405025	4.4702096878782	4.69369199363792	-0.505344727939161	0.191996204711588	0.491529020831217
Merged-chr11-74371899-3	chr11	74371806	74372006	+	948.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7235.0	NM_001011851	258153.0	Mm.376124	NM_001011851	ENSMUSG00000058275	Olfr412	MOR127-5P	olfactory receptor 412	protein-coding	4.04053047806726	4.3609357778114	3.99268531038794	4.07867865970772	3.62432016308125	4.38727869483952	3.58043965770179	3.99028436957745	-0.521212527127055	0.29119356421126	0.603507649283522
Merged-chr19-4164726-4	chr19	4164627	4164827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_134148, exon 10 of 10)	3' UTR (NM_134148, exon 10 of 10)	-1344.0	NR_153659	58988.0	Mm.271937	NM_021485	ENSMUSG00000024830	Rps6kb2	S6K-beta-2|S6K2	ribosomal protein S6 kinase, polypeptide 2	protein-coding	5.02698171754218	4.86397027960158	4.99374000591694	5.14373627351502	4.9422037485535	5.13211111443188	4.93507572953309	5.12128462643647	0.0180840524218973	0.953920279874262	0.983588513160575
Merged-chr14-72685053-4	chr14	72684984	72685184	+	879.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 1 of 25)	intron (NM_207636, intron 1 of 25)	24919.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	4.38563880555005	4.54752296031615	4.25840545351873	4.38606522877454	4.23028779835065	4.18954110069634	4.09917620482976	4.11387071225574	-0.585023549154862	0.135250731299868	0.409381349004647
Merged-chr1-46894616-4	chr1	46894506	46894706	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356417, intron 1 of 10)	ORR1D2|LTR|ERVL-MaLR	31170.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	5.13661121781766	4.96686619350774	5.32443395759352	5.5287335146323	5.39535948110079	5.05789657915041	5.48440411745091	5.02925056287006	-0.0141732847063027	0.965440903174459	0.987769412779284
Merged-chr1-136656730-3	chr1	136656658	136656858	+	717.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26638.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	4.197082290381	3.94188653325002	4.44430402842751	4.68233979538549	3.91654803584446	4.17891430604692	3.8774798016294	4.19512229370904	-0.793534827826586	0.0795170423048658	0.30534988576067
Merged-chr6-7858686-3	chr6	7858583	7858783	+	942.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_052993, intron 1 of 3)	Tigger1|DNA|TcMar-Tigger	13459.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	3.7227211398877	3.96360326098514	3.67118827309992	3.96425620269199	3.32637168934269	3.34848953879049	3.85056171097965	3.61496983715497	-0.917768505980992	0.0754144254593852	0.296537586442028
Merged-chr2-27767004-13	chr2	27766878	27767078	+	953.1538699999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56395.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	4.67164999741183	4.56869516398412	4.71012313369294	4.1741133393152	4.83680477061268	4.88183294448714	4.53121411796461	4.63051765911426	0.439890872769513	0.243081710295561	0.554046336966528
Merged-chr15-59413397-4	chr15	59413310	59413510	+	972.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	39212.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	5.3872137763241	5.82655483630924	5.5613472515815	5.75980688787613	5.66518078105259	5.36812887536109	5.92178390878943	5.11043588239382	-0.159796420300324	0.60859275120483	0.830699381505368
Merged-chr9-40628372-3	chr9	40628286	40628486	+	900.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57578.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	5.11655014506251	5.32029746259104	4.76731057786759	5.09101712670989	4.18541981892347	4.46991383311235	4.04012734966798	4.28227796284257	-1.88098816282237	1.2267357632609e-06	4.22029119831549e-05
Merged-chr19-44264385-4	chr19	44264277	44264477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-29299.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	6.47217447455337	6.64198906769678	6.44080319688025	6.37608290840512	6.21259947932811	5.69651954031601	6.17417825594012	6.18153045354141	-0.589308318159284	0.0147258683797642	0.103492135204218
Merged-chr7-89309255-5	chr7	89309135	89309335	+	985.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 2 of 14)	ORR1F|LTR|ERVL-MaLR	29552.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	4.84694246132073	4.4529316211835	5.22718274815098	5.18532300840559	4.74738282770168	4.64652381050209	4.89567960082309	5.0165284186862	-0.278244524810059	0.454398182201557	0.738247895996421
Merged-chr2-170240281-4	chr2	170240185	170240385	+	925.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97610.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	4.48075493634532	4.81477705239254	4.18235590983561	4.91067535998561	5.06612285375621	4.61290442933663	4.58761923911928	4.56487781340099	0.193864320335173	0.635373344036325	0.845695144738141
Merged-chr12-52503824-4	chr12	52503757	52503957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12220.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	7.2425162714148	6.86667878413058	6.81735633163526	7.06359232558381	7.03219509332763	7.33456197310522	7.06603977942039	6.70670247018111	0.0574141657139745	0.793893107654857	0.92022175040272
Merged-chr12-55016600-3	chr12	55016494	55016694	+	874.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30258.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	3.5906392369025	3.50931699535156	3.47408500465496	3.30777650477048	4.05948892335853	3.52793972374349	3.73304407298192	3.97289750340615	1.18898295075333	0.0147728985608652	0.103681134734494
Merged-chr6-88044512-1	chr6	88044412	88044612	+	687.200012	f0_balb.idr	intron (NM_001293652, intron 1 of 7)	MIR|SINE|MIR	505.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	4.00594331742618	3.92169727457707	4.05120724753806	3.59292489530572	4.15039596492172	3.7598721320884	3.74170570713111	3.86010366849637	0.0185884762152762	0.968682274337622	0.988762939668968
Merged-chr5-10682955-4	chr5	10682874	10683074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV16_I-int|LTR|ERVK	-182055.0	NR_003596	623849.0	Mm.335888	NR_003596	ENSMUSG00000091422	Gm6455	EG623849	predicted gene 6455	pseudo	6.4001524311354	5.67200513019935	6.41679432408054	6.5820708131431	5.44493065849253	5.68947035844279	5.78521529138404	5.53489547459155	-1.1207043870232	0.000152098693149009	0.00288545652442786
Merged-chr5-123895331-2	chr5	123895223	123895423	+	934.400024	f0_c57.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-11952.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	2.94902077329991	2.86334922879271	2.94933343448021	2.33501542669849	4.11971388594959	4.57607971318564	3.88754713411364	4.19545978464528	8.08603592612512	1.09511551050634e-16	2.29938722484751e-14
Merged-chr8-13647840-4	chr8	13647765	13647965	+	990.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	29722.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	5.9427444060252	5.42700474934223	5.67047067228921	6.36251318989188	5.43393036911523	5.24924160160439	5.39107648137471	5.69160046171704	-0.776356182964872	0.0168050909279584	0.113639518065852
Merged-chr19-46523213-4	chr19	46523079	46523279	+	988.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	21531.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	5.39172085414065	5.09031732920674	5.05916168743183	4.87766002998201	5.03343320615127	5.36415261518476	4.99978078865894	5.38885233370929	0.186454429251618	0.564493283087946	0.806796423519025
Merged-chr11-103281924-4	chr11	103281834	103282034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14533.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	7.43888326186188	7.26159351974808	7.44958348197631	7.42468167739944	7.29319897649066	7.25830942554731	7.39385658406743	7.4630695935731	-0.0572526780152352	0.745700802549617	0.899661639795912
Merged-chr8-79159578-4	chr8	79159459	79159659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	MLT1J|LTR|ERVL-MaLR	89024.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	5.56542034889445	5.50510952162477	6.09901239783743	6.49229447891697	5.6713500205321	5.52899122926058	5.88605454384376	5.53341051001307	-0.542514716398849	0.0997631657916307	0.346500478934587
Merged-chr10-20915833-4	chr10	20915743	20915943	+	959.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36704.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	4.23785117022302	4.58481026513992	4.68870024143195	4.69725353756719	4.65928280926433	4.70160734119317	4.7748273491717	4.89507557722582	0.3863034639629	0.28186892129269	0.594006038272513
Merged-chr2-135439665-2	chr2	135439565	135439765	+	901.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_019677, intron 32 of 32)	intron (NM_019677, intron 32 of 32)	143555.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	3.02788852359549	2.69672803503477	2.90444518155518	2.86196732117806	2.90984349009151	3.1392388258041	3.18040540337897	3.02667232083351	0.799529373765209	0.179703479911623	0.475928644273867
Merged-chr15-18823613-4	chr15	18823515	18823715	+	865.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009865, intron 1 of 11)	intron (NM_009865, intron 1 of 11)	3286.0	NM_009865	320873.0	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding	4.36015339168011	4.29847023769897	4.36081878876955	4.84556638093066	4.4312441382125	4.57708411694568	4.46787677336917	4.21664110283732	-0.184135560808653	0.649137183889498	0.85256823714495
Merged-chr6-3463176-4	chr6	3463068	3463268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178899, intron 9 of 9)	intron (NM_178899, intron 9 of 9)	31330.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	6.56006375758358	6.39779631418729	6.81196865091675	6.64308251885979	6.69498217458834	6.65365694059476	6.66606193561248	6.63558509592981	0.0764677950809799	0.714399923039277	0.885790916272019
Merged-chr6-22398237-3	chr6	22398146	22398346	+	857.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42165.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	3.48503584091092	3.50921599051734	3.4854837714893	3.4865912624149	3.70961502349354	3.47854801985522	3.58167010358956	3.87724452782104	0.577851205643204	0.229682677332849	0.538810338470597
Merged-chr15-78597973-4	chr15	78597870	78598070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 1 of 12)	intron (NM_028195, intron 1 of 12)	923.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	6.77765134982368	6.44585098090306	6.88266559110134	6.58427026663896	6.35448709624078	6.66744166644591	6.47458614787239	6.37980809175564	-0.299704814091251	0.179904583731611	0.476197551799202
Merged-chr8-46595799-4	chr8	46595697	46595897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001184, intron 6 of 14)	intron (NM_001001184, intron 6 of 14)	21430.0	NM_001001184	408022.0	Mm.217385	NM_001001184	ENSMUSG00000038225	Primpol	BC065112|Ccdc111	primase and polymerase (DNA-directed)	protein-coding	7.23586072645812	7.44566853689765	7.65027192889105	7.81118809112535	7.48713991525496	7.4247469515022	7.50176844838597	7.4786965194031	-0.122206088942867	0.532422521148965	0.788161360416007
Merged-chr14-58321511-4	chr14	58321403	58321603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	248817.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	7.77717045534572	7.56698126006059	7.92855792644936	7.87131591799077	7.48866914017786	7.58780211527152	7.53528419399079	7.34233474123717	-0.400224133716822	0.0248971327014106	0.148061910648651
Merged-chr8-46497773-4	chr8	46497665	46497865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302163, intron 2 of 20)	intron (NM_001302163, intron 2 of 20)	6799.0	NM_001302163	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	5.98195242758107	6.46189406997217	6.26803380110673	6.68011218833364	6.05330099945568	5.4965813579318	6.14175524842542	5.95571273171685	-0.686138376434066	0.0145672511292174	0.102722643959438
Merged-chr13-67728789-4	chr13	67728668	67728868	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027969)	promoter-TSS (NR_027969)	405.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	4.50741716128406	4.60926168876079	5.33612709685939	4.77357892521951	4.66336379114843	4.44625519172831	4.53154227002769	4.74975638786462	-0.500790515430498	0.199755441183611	0.50168986796543
Merged-chr15-79229246-4	chr15	79229152	79229352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008837)	promoter-TSS (NM_008837)	79.0	NM_008837	18693.0	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	6.03988186121854	6.23220705314326	6.25581410498285	5.66813103793947	5.94502936625182	5.93392242585316	5.94484605747472	6.37092989812887	0.00914909274747877	0.973425563204114	0.990485651958264
Merged-chr12-112619235-4	chr12	112619154	112619354	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007421)	promoter-TSS (NM_007421)	-793.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	4.9336767613391	4.8360011509551	4.37876821481137	5.20411639403599	5.05104936367722	4.70998670873828	5.01002629029861	5.12398117601739	0.186887325446108	0.616113451069388	0.834845587136962
Merged-chr15-57762381-4	chr15	57762274	57762474	+	871.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	67707.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	3.98870743873902	3.78660351909431	3.79438721346976	3.8914193833742	3.91577474973584	3.61710824913205	3.77918911546917	4.1153072871579	0.0141039479573444	0.975238301416356	0.991193161400585
Merged-chr7-44553082-2	chr7	44552982	44553182	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009473, intron 2 of 9)	intron (NM_009473, intron 2 of 9)	883.0	NM_009473	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	3.69227534003948	3.51094005183455	3.74440217844069	3.80069542486682	3.61186538682588	3.81056713568404	3.95521213728665	3.58135869472332	0.144733858087214	0.761114950680765	0.906504042208493
Merged-chr4-138943914-4	chr4	138943826	138944026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-23186.0	NM_025786	66825.0	Mm.252312	NM_025786	ENSMUSG00000070661	Rnf186	9130020G10Rik	ring finger protein 186	protein-coding	6.04393833861384	6.05738490529288	5.68660379070008	6.2029731420155	6.52197189890255	6.34883003845727	6.42711708161123	6.60667707215502	0.681573406441209	0.00461512408055643	0.0447730566893725
Merged-chr7-66226072-4	chr7	66225969	66226169	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	116554.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	4.913274514368	5.22684978252602	5.09919990337766	5.2772034860597	5.70342686830426	5.05345842394397	5.26475410271297	5.31666884211906	0.407423496490467	0.205245970037211	0.508859472252119
Merged-chr9-69949199-1	chr9	69949099	69949299	+	612.0	f0_c57.idr	Intergenic	B4|SINE|B4	-40267.0	NM_016787	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	3.20221979965991	3.10719692046646	3.138657908241	3.3091611312989	3.62425528658492	3.59841388160192	3.47032701125516	3.37729549558065	1.14052306380136	0.0315750910681183	0.173216447563591
Merged-chr7-27508770-4	chr7	27508673	27508873	+	964.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019412, intron 5 of 5)	B3|SINE|B2	9449.0	NM_019412	19153.0	Mm.10119	NM_019412	ENSMUSG00000053198	Prx	L-Periaxin	periaxin	protein-coding	4.4869357112811	5.00755974911062	4.4429699719595	4.56433447880026	4.91313357523694	4.7462468045695	4.77761791852459	4.34715187615277	0.151770495943093	0.693599843135803	0.875427666186068
Merged-chr2-101766795-4	chr2	101766708	101766908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 3 of 8)	intron (NM_001355625, intron 3 of 8)	30899.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	6.31354088607984	5.88789461035073	6.38515543157075	6.59609267991922	6.3517821010154	6.18608072451322	6.40256301257466	5.95708496283804	-0.138623336545488	0.598559441957855	0.825987886019831
Merged-chr19-10605455-4	chr19	10605349	10605549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015735)	promoter-TSS (NM_015735)	-176.0	NM_015735	13194.0	Mm.289915	NM_015735	ENSMUSG00000024740	Ddb1	127kDa|AA408517|p127-Ddb1	damage specific DNA binding protein 1	protein-coding	7.50361882691147	7.81241642319374	7.48615270500736	7.56844278400476	7.44737995997839	7.69134523960957	7.4109621059063	7.48098778358038	-0.122263250634865	0.501085476876327	0.769095113768232
Merged-chr17-47521752-4	chr17	47521673	47521873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	16722.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	5.48886161276068	5.35737840173388	5.71645037854598	5.84459466762456	5.20048402940919	5.35723116247508	5.43457505464406	5.40043436549249	-0.497438323685645	0.0871347117942822	0.3219368685991
Merged-chr4-132509795-4	chr4	132509653	132509853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144907, intron 1 of 9)	intron (NM_144907, intron 1 of 9)	703.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	4.99185645810823	4.93395847015115	5.5598855887647	5.38497555683506	4.99944115199991	5.20696882234254	5.40613991097052	5.40289932160606	0.0148204854698838	0.964129744498923	0.987279399851659
Merged-chr13-37339235-2	chr13	37339133	37339333	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6112.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	2.59109224287355	2.39598304613765	2.5216891757941	2.83059338276382	2.5711832211632	2.8270745879144	2.71065855129965	2.83633267214478	0.640928303270224	0.365939332116986	0.670559049550894
Merged-chr9-72133331-4	chr9	72133231	72133431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-21512.0	NM_011544	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	6.17389488468586	6.1331818552538	6.26915173384395	6.0993088746994	6.17676895570201	6.24879511306393	5.88533017929228	6.08986488360726	-0.0848049003145382	0.716124630263804	0.886410487045428
Merged-chr1-174049570-4	chr1	174049444	174049644	+	925.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146716)	promoter-TSS (NM_146716)	-831.0	NM_146716	258711.0	Mm.377648	NM_146716	ENSMUSG00000047048	Olfr432	MOR123-2	olfactory receptor 432	protein-coding	5.81766982034264	6.19050090854423	5.68938829922625	5.46121137966355	4.77079310767148	5.03946124791701	4.6478802136886	4.76127570901085	-1.85338185872323	5.34196617251039e-08	2.42962179037136e-06
Merged-chr6-54971825-3	chr6	54971689	54971889	+	851.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171007)	promoter-TSS (NM_001171007)	-128.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	3.40254196757477	2.91604590023729	2.87277360395617	2.84121984526485	3.10864875671414	3.12197877880366	3.1806160984774	3.40090160636447	0.727152769490315	0.228747854500828	0.537570739159152
Merged-chr4-82918824-3	chr4	82918721	82918921	+	853.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154662, intron 28 of 35)	intron (NR_154662, intron 28 of 35)	-33670.0	NM_009887	12622.0	Mm.6780	NM_009887	ENSMUSG00000038192	Cer1	Cerl|Cerl1|Cerr1|cer-1	cerberus 1, DAN family BMP antagonist	protein-coding	3.24299122800206	3.07924620056998	3.72450559090657	3.60804384246512	3.2094179818067	3.02191436503814	3.04547456471046	3.05362513370667	-1.34122477876104	0.0287014172648495	0.162706130893176
Merged-chr17-88552149-4	chr17	88552078	88552278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 7 of 21)	intron (NM_028658, intron 7 of 21)	22054.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	5.98419625990439	6.13315709156613	6.42273889757803	6.36027736849321	5.90823779570316	6.11590306499591	6.10384556116807	6.04739704714372	-0.316150889586405	0.190832389303318	0.490284569083293
Merged-chr7-12913777-2	chr7	12913677	12913877	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8534.0	NM_009095	20103.0	Mm.5291	NM_009095	ENSMUSG00000012848	Rps5	AA617411	ribosomal protein S5	protein-coding	2.74087507500083	2.99018337338023	2.80987797190731	2.84545414998398	3.15007255640904	2.98216786998776	2.98559105672995	2.93602778903415	0.726412720775086	0.222646589574287	0.530771036215024
Merged-chr17-24550435-2	chr17	24550335	24550535	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013630, exon 1 of 46)	exon (NM_013630, exon 1 of 46)	485.0	NM_013630	18763.0	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystin 1, transient receptor poteintial channel interacting	protein-coding	5.6779815590559	5.78518137400418	5.75403530924665	5.4928813932651	5.57476907456181	5.77524661969173	5.72481322154865	6.03131983457489	0.181246228393129	0.500127036192694	0.768714895599853
Merged-chr6-54313603-1	chr6	54313503	54313703	+	745.5	f1_c57bl6.idr	intron (NR_033635, intron 4 of 13)	intron (NR_033635, intron 4 of 13)	-13409.0	NM_030024	78004.0	Mm.41984	NM_030024	ENSMUSG00000045725	Prr15	E130201N16Rik|G90	proline rich 15	protein-coding	2.56850034438526	2.30050139602055	2.76237508081623	2.55422086113404	2.50940187050748	2.87177529636079	2.75141671457411	2.76084256317734	0.851761079319767	0.227521473885313	0.536187051622318
Merged-chr1-39525967-4	chr1	39525870	39526070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9731.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	7.05969953007668	7.10697031964877	7.13099490868907	7.5456782250212	6.71586313849666	6.83161903862899	6.84549338017753	7.06790040688021	-0.516923510188322	0.0167521479621001	0.113421586587494
Merged-chr15-76080583-4	chr15	76080491	76080691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356629, intron 1 of 12)	CpG	279.0	NM_001164600	67959.0	Mm.29965	NM_028364	ENSMUSG00000002524	Puf60	2410104I19Rik|2810454F19Rik|SIAHBP1	poly-U binding splicing factor 60	protein-coding	7.14718019524375	7.15728734195852	6.82694633163152	6.67084069693973	7.13756446773601	7.33635352712482	7.31063227505357	7.20964107268105	0.400817301719509	0.0547641582634138	0.244438328276888
Merged-chr6-47453883-3	chr6	47453788	47453988	+	950.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012042)	promoter-TSS (NM_012042)	156.0	NM_001355551	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	4.23527502552935	4.52742896119814	4.18999724758072	4.20060020627392	4.2983251890335	4.26810358416024	3.80031018782834	4.40179963925897	-0.196570360467964	0.64368602805802	0.849871909760734
Merged-chr9-14699186-4	chr9	14699087	14699287	+	893.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36165.0	NR_152172	665374.0	Mm.387249	NR_152172	ENSMUSG00000111085	Gm7607	EG665374	predicted gene 7607	ncRNA	3.85858901748481	3.47380909096976	3.47736694703476	3.72994473003089	3.93110356834063	3.7731529325927	4.05609086203711	3.59634437828319	0.600143519425225	0.215449052547971	0.521625619663558
Merged-chr13-95679974-3	chr13	95679875	95680075	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 17 of 35)	intron (NM_027711, intron 17 of 35)	-16945.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	6.09776623952608	6.8186535023183	6.68908907912437	6.51499349678883	3.69932978212387	4.11326816404614	4.02084028029631	4.18045208341465	-6.84942656327478	4.1150056962354e-19	1.23587337743603e-16
Merged-chr13-64254324-3	chr13	64254222	64254422	+	751.083313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NR_045798, intron 1 of 2)	B1_Mus2|SINE|Alu	5622.0	NR_045798	66503.0	Mm.443331	NR_045798	ENSMUSG00000097101	1810034E14Rik	-	RIKEN cDNA 1810034E14 gene	ncRNA	2.87335014608153	2.59446347073306	3.33802708811039	2.72045488397023	3.25120924777042	3.24052706498127	3.05569620483212	3.06591629058348	1.00223145013602	0.132995250421988	0.406105758986762
Merged-chr9-99575856-4	chr9	99575778	99575978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031403)	promoter-TSS (NM_031403)	79.0	NM_031403	83703.0	Mm.31324	NM_031403	ENSMUSG00000032469	Dbr1	AW018415	debranching RNA lariats 1	protein-coding	6.34908359809249	6.08198608005007	6.51501447892205	6.2485931738603	6.18992377438672	6.47149597938443	6.14916049531831	6.07145788092708	-0.11413749298971	0.631827566512822	0.843565602967326
Merged-chr14-40917860-4	chr14	40917810	40918010	+	917.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 3 of 8)	intron (NM_145928, intron 3 of 8)	-24945.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	4.30950754017997	4.51210401238581	3.95188922468334	4.66227604739676	4.46600777682865	4.34381838406074	4.37680007132045	4.26200652727531	-0.0853427199492457	0.837891958598433	0.938474063450959
Merged-chr6-113645050-4	chr6	113644933	113645133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 1 of 11)	intron (NM_001113553, intron 1 of 11)	6566.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	8.23823544562426	8.54740082266951	7.63489338467799	8.03257105329767	8.18960967356431	8.59990937890988	8.32668526733887	8.02054713469214	0.183430657574495	0.418859716893121	0.712112541828539
Merged-chr3-131642987-5	chr3	131642859	131643059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289479, intron 13 of 13)	intron (NM_001289479, intron 13 of 13)	76927.0	NM_001289477	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	6.01095740245274	6.18831209422624	6.62865080493827	6.05499859192239	6.22689230965429	6.33790304117945	6.29927582130471	5.91347484054198	-0.0463409345759164	0.85856151858785	0.946576014812915
Merged-chr4-87943176-4	chr4	87943081	87943281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027326, intron 2 of 10)	intron (NM_027326, intron 2 of 10)	90226.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	5.63929025075541	5.24123763867408	5.84293243310741	6.23396139759366	5.99876191216238	5.54748921320087	5.98663547786191	6.12976219687417	0.205384981660314	0.525055940812275	0.783229855070132
Merged-chr13-37761027-3	chr13	37760911	37761111	+	819.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65027.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	2.93570204027864	2.78100285040435	2.8759627513995	2.6798440288566	3.12090617215481	2.78271096725385	2.59740995617925	3.04666780131779	0.412420987738249	0.527674227410009	0.784512570657888
Merged-chr9-120058840-4	chr9	120058741	120058941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009987, intron 1 of 1)	intron (NM_009987, intron 1 of 1)	9455.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	7.44427315093192	7.4577186114256	7.43610015647598	7.24146676086872	7.56233744516368	7.5647196200968	7.2272170969108	6.92379882953113	-0.0553929284470633	0.793298140215741	0.919945390221731
Merged-chr3-131894593-4	chr3	131894559	131894759	+	956.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-190633.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	4.39123415911546	4.26213223457134	4.53995055551271	4.79141740295486	5.43406683406464	4.81044952472163	5.24444531001426	5.31950997672048	1.37751459661236	0.000256923471361984	0.00446800776156234
Merged-chr2-122450476-4	chr2	122450394	122450594	+	854.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356532, intron 6 of 17)	MTC|LTR|ERVL-MaLR	9674.0	NM_001356532	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	4.17766637963938	4.23950208006955	4.13059371974534	4.21208872286347	4.12811475690374	4.09997704905828	4.11298165883906	4.67190343252338	0.202897082654614	0.625162604212001	0.839735974131569
Merged-chr2-153444385-5	chr2	153444305	153444505	+	945.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001986)	promoter-TSS (NM_001001986)	74.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	5.07823715326791	4.92629942807387	4.52774230119858	4.81387681251112	4.94588527132211	4.70595163423186	4.79198681646664	4.73601490976588	-0.0900158777281765	0.793660639480421	0.920154586076439
Merged-chr2-4929471-4	chr2	4929376	4929576	+	914.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010726, intron 5 of 8)	MTC|LTR|ERVL-MaLR	10480.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	4.18180440477672	4.32562649547714	4.60033626035439	4.29322315715496	4.87094745582157	4.60776208551767	5.13996123745596	4.51536373011461	0.995047125903996	0.00869657330916503	0.0713907493513062
Merged-chr2-30980018-4	chr2	30979949	30980149	+	940.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144885, exon 3 of 9)	exon (NM_144885, exon 3 of 9)	1892.0	NM_144885	227707.0	Mm.235238	NM_144885	ENSMUSG00000026851	BC005624	-	cDNA sequence BC005624	protein-coding	4.20661134068041	4.03171712808034	4.41975746661882	3.56674238866163	4.45454983894852	4.02216881099894	4.09351037685718	4.75690989109441	0.687175939396882	0.155759472147876	0.441609163147605
Merged-chr7-34388593-4	chr7	34388521	34388721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025948, intron 1 of 10)	intron (NM_025948, intron 1 of 10)	1084.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	5.81593738327818	6.07987132834955	5.51176930637571	5.90941817454441	6.22296848668034	6.23742770536764	6.2017258942555	5.56897927719772	0.373953849627591	0.186926504687787	0.485120635668048
Merged-chr2-43748607-7	chr2	43748499	43748699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153820)	promoter-TSS (NM_153820)	-225.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	4.30331852707945	4.21636309214395	4.84766496373923	4.412258996752	4.42099025639118	4.52762778373342	4.65659912748527	4.67594321753483	0.242836794539601	0.529777920481409	0.785948030615125
Merged-chr4-53062343-2	chr4	53062241	53062441	+	990.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 31 of 49)	intron (NM_013454, intron 31 of 49)	50461.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	2.96722134725594	2.82000365834971	3.0302712563431	3.01740645990272	3.12789705760616	3.31437647321449	3.0194991728442	3.08847617808391	0.711891552840402	0.21552345084755	0.521712540836435
Merged-chr9-21015946-4	chr9	21015859	21016059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010493)	promoter-TSS (NM_010493)	19.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	7.15950365998243	7.76922232717164	6.82610713050034	5.76661943438909	7.20950650213261	7.24804020936975	7.01105499517795	6.23780561451537	-0.129362415972991	0.830096780629395	0.934807751612501
Merged-chr1-138541719-4	chr1	138541605	138541805	+	918.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 3 of 9)	intron (NM_021605, intron 3 of 9)	78052.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	4.33248556534291	4.59190980366712	4.38009139673665	4.92976984333671	4.6075107577338	4.50928093621258	4.49111499118829	4.5893189488024	-0.119161525775936	0.759199281904646	0.905479988047768
Merged-chr11-76993109-4	chr11	76993012	76993212	+	897.337524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5485.0	NM_010484	15567.0	Mm.300318	NM_010484	ENSMUSG00000020838	Slc6a4	5-HTT|AI323329|Htt|Sert	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	protein-coding	4.50094981964815	5.15700639892908	4.70294351684323	4.22040096024467	4.81449162393521	4.44534344575306	4.60442969831044	4.45455338757899	-0.197994117016274	0.636733856158706	0.846443644015687
Merged-chr2-165791884-2	chr2	165791790	165791990	+	730.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027230, intron 22 of 23)	intron (NM_027230, intron 22 of 23)	66283.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	2.81148893205407	2.72396424533126	2.59953283113424	2.59993013786652	2.95458817545241	2.9855532560902	3.03768224309376	3.10208355385908	1.5525926371549	0.0108565496924866	0.0837493524918862
Merged-chr4-48047268-4	chr4	48047173	48047373	+	949.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015743, intron 1 of 7)	CpG	1968.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	5.27670656983078	4.98017621424412	4.77119670746612	4.94025519911037	5.48952375866749	4.98918646353532	4.93937311312363	4.84826077661338	0.207259272237414	0.55240990005822	0.799625491148476
Merged-chr11-3914293-4	chr11	3914173	3914373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153142, exon 1 of 2)	5' UTR (NM_153142, exon 1 of 2)	391.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	6.16116750085513	6.02013866241978	6.04435423282297	5.99142596104285	5.66593095506211	5.92024834803004	6.07342315497327	5.7127442746543	-0.327198190424171	0.190065546462323	0.48915918326795
Merged-chr17-35866560-4	chr17	35866453	35866653	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175242)	promoter-TSS (NM_175242)	-62.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	6.26197616511248	6.93168703114965	5.66830940650069	4.6925906358018	6.74364341208777	6.49369370896325	6.0338360459383	5.63491228473572	0.205819476547225	0.77744417042117	0.913201535037789
Merged-chr1-10233086-4	chr1	10232984	10233184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102430)	promoter-TSS (NM_001102430)	-414.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	7.50290451342877	7.42959076258287	7.61745938356093	7.72290858852786	7.44694882771434	7.25098452463211	7.4671318640499	7.08073191058929	-0.337224129713333	0.0763398249944376	0.298445235529141
Merged-chr10-26779569-3	chr10	26779452	26779652	+	655.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	7040.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	3.44767898776448	3.4276578348357	3.38939704629234	3.92097701186746	3.54487700338569	3.44048466765818	3.31689222756831	3.7049040868905	-0.234561473302673	0.666696195008147	0.862099084982087
Merged-chr5-114916939-4	chr5	114916850	114917050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6290.0	NM_001359946	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	6.56570152282844	6.84592481662331	6.52015171530478	6.76656997961208	6.02199809470175	6.35332581420312	6.01297587110625	5.81311867065432	-0.939843250722511	7.48442017130837e-05	0.00158740626750166
Merged-chr14-100026205-1	chr14	100026105	100026305	+	708.0	f0_balb.idr	intron (NM_010636, intron 2 of 6)	intron (NM_010636, intron 2 of 6)	123591.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	3.32572367086191	3.39990873314655	3.32615242375401	3.87943754908316	3.18661518999519	3.55265212484408	3.12924640608901	3.06910040014917	-0.965142205060192	0.104570810555583	0.355642683574744
Merged-chr11-54156085-4	chr11	54155980	54156180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	55156.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	6.72876304954229	6.71440202718378	6.56211634376289	6.67576073030623	6.59290243856953	6.40648388921728	6.63749308037854	6.767255316316	-0.0923046088045159	0.655570105602788	0.856182905757707
Merged-chr10-123091972-4	chr10	123091884	123092084	+	807.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15479.0	NM_001163025	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	3.98753329407658	4.00336142237569	3.76992592250524	4.36182828447913	4.321130588876	3.82850684621388	4.19839002116642	4.12812003752105	0.181757493341666	0.693429184447335	0.875305395019895
Merged-chr8-36097132-3	chr8	36097007	36097207	+	740.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172911, intron 1 of 5)	intron (NM_172911, intron 1 of 5)	2279.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	3.38997723238565	3.26428509526058	3.33600442978329	3.30034389423798	3.10868227963092	3.33161258018588	3.47769636228907	3.15592990101053	-0.181121429679876	0.736285958804499	0.895944255036988
Merged-chr1-184733751-3	chr1	184733645	184733845	+	887.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1252.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	4.08639093578524	3.92324481027889	3.88370933632257	4.03299444023808	4.18403016292429	4.4700325120955	3.8683911621629	4.17516786217402	0.522875686381676	0.220684712732757	0.528666225045383
Merged-chr6-120908334-3	chr6	120908228	120908428	+	944.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007544, intron 1 of 5)	BGLII|LTR|ERVK	8496.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	4.08385917665887	3.97244549057753	4.41458124402564	3.68214131300091	4.67936942112767	4.36630804882801	4.51186215978706	4.83252875110242	1.35572581270791	0.00140574787804434	0.0177199795897465
Merged-chr15-66098455-3	chr15	66098349	66098549	+	814.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152923, intron 1 of 14)	L1M4|LINE|L1	-121645.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	3.7508241075458	3.5633785145491	3.75135910672107	3.9758332905228	3.4940144153651	3.81785260709286	3.73588655010767	3.697554771107	-0.289833253729598	0.547360426617855	0.796783882293747
Merged-chr9-66886451-2	chr9	66886351	66886551	+	979.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	33254.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	3.16442273782306	3.1998349051854	3.33053055221911	3.01380426511828	2.92632254313921	3.33583249059171	2.9657598743202	3.22069039782451	-0.226051042591809	0.698498898936322	0.878417899777182
Merged-chr5-32135808-4	chr5	32135706	32135906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008037)	promoter-TSS (NM_008037)	-666.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	8.27910722530027	8.33299317297649	8.32105189546016	8.27275924246904	8.63881385460975	8.94151361176346	8.75893624564096	8.82774728424056	0.618948529082288	3.92519522798748e-05	0.000916638684819295
Merged-chr2-28441006-4	chr2	28440900	28441100	+	829.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GTTTG)n|Simple_repeat|Simple_repeat	-6941.0	NM_001005420	241289.0	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	3.75323523868463	3.65473856192551	3.59081286477653	3.51868873180653	4.06947695433645	3.76576499270514	3.51899372224829	3.94063267984071	0.665474742157323	0.162563795337029	0.451908939203062
Merged-chr17-7169976-4	chr17	7169872	7170072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011299)	promoter-TSS (NM_011299)	-143.0	NM_011299	20112.0	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding	9.28877283974335	9.3663732866918	9.37485916197557	9.52196846462668	9.14092980107266	9.3290585882084	9.33717816886207	9.16845407173028	-0.18381334218957	0.199360018459639	0.501227323441017
Merged-chr6-125218761-1	chr6	125218661	125218861	+	563.666687	f0_c57.idr	intron (NM_001080557, intron 2 of 3)	intron (NM_001080557, intron 2 of 3)	3180.0	NM_009496	22317.0	Mm.32321	NM_009496	ENSMUSG00000030337	Vamp1	Syb-1|Syb1|VAMP-1|lew	vesicle-associated membrane protein 1	protein-coding	3.56459152350731	3.83121229824969	3.37825684965465	3.43273761991023	3.75982423009296	3.74041557672422	3.85681176690635	3.95991143939151	0.823053313510175	0.0857695442610606	0.318965015201569
Merged-chr12-108792333-4	chr12	108792235	108792435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009537)	promoter-TSS (NM_009537)	-976.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	6.01867067008238	6.01700687870265	6.40202264741799	5.96693479230148	6.26475994834082	6.19627250711814	6.15515591234721	6.31226855201147	0.205945028108002	0.386480899906635	0.687635667106349
Merged-chr1-64222814-6	chr1	64222727	64222927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101438.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	5.12860445389897	5.10383401463261	5.29087989833729	5.25544556658711	5.65985735532857	5.33887955222743	5.20306550285581	5.37495966359619	0.390847953248839	0.185994505886331	0.483915587117665
Merged-chr9-78395786-4	chr9	78395692	78395892	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001191044)	promoter-TSS (NM_001191044)	15.0	NM_001191044	100048658.0	Mm.158166	NM_001191044	ENSMUSG00000070291	Ddx43	-	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43	protein-coding	5.68367381916146	5.62706906706342	5.58348282806338	5.70715733465804	5.48786964572205	5.5296933390439	5.58127513470669	5.31748791940708	-0.296296867929087	0.263683557204164	0.575798866850306
Merged-chr2-158134033-3	chr2	158133909	158134109	+	874.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 4 of 12)	intron (NM_009373, intron 4 of 12)	12383.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	3.66780193769804	3.47912691663635	3.34996213188945	3.48735811280353	3.53578709031328	3.33506305771885	3.33819316468243	3.5687624435011	-0.156111929548797	0.75872513287063	0.9052937093722
Merged-chr16-95931712-4	chr16	95931613	95931813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2636.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	7.88952749855019	7.83145314421471	7.95317332075081	7.89806243032438	7.61918461379914	7.5370090218196	7.74172146204356	7.66902822837072	-0.325522978390989	0.0449494864370546	0.21667685533352
Merged-chr3-95669019-7	chr3	95668912	95669112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	10291.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	5.46738677873619	5.87817410245442	5.1965570827486	5.05800610959874	5.32631563803862	5.6145817718604	5.10257593098766	5.29005073063439	-0.158012172029411	0.640253547527733	0.848037046355902
Merged-chr15-80572534-2	chr15	80572434	80572634	+	906.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289442)	promoter-TSS (NM_001289442)	-63.0	NM_001289442	17444.0	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	3.18010844376345	2.96445249076885	3.28728277504515	3.0080842123397	3.15905027831852	2.90100418586695	3.05318769505414	3.17879233925471	-0.112667861268652	0.846506378151044	0.941954402290774
Merged-chr14-21090543-4	chr14	21090440	21090640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243041, intron 1 of 10)	ORR1D2|LTR|ERVL-MaLR	14388.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	5.41359940678962	5.43501685222201	5.2574596098997	6.16926773954251	5.42107835523445	5.46775470249035	5.47262293189133	5.35027898630784	-0.380370146624026	0.255756340051657	0.56736522248136
Merged-chr14-54518756-4	chr14	54518653	54518853	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1283.0	NM_001313907	27374.0	Mm.196585	NM_013768	ENSMUSG00000023110	Prmt5	Jbp1|Skb1	protein arginine N-methyltransferase 5	protein-coding	5.41514198515577	5.50093160578135	5.41607633078585	6.21206327834734	5.42241629529282	5.22314089068562	5.47418939633495	5.35178381064476	-0.578179710651418	0.0804903145719799	0.307691734743231
Merged-chr15-95826617-3	chr15	95826513	95826713	+	955.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	3459.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	4.40453945833056	4.43733043370297	4.26753911603552	4.41881396647963	5.08195912507126	4.44413540461669	4.20043556177323	4.3124293363692	0.431456089161919	0.309528501529382	0.621756150990825
Merged-chr10-22732404-4	chr10	22732304	22732504	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011603)	promoter-TSS (NM_011603)	-957.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	5.1520864365697	5.28270130769415	5.0514419106186	5.32076074941253	5.25797979377089	5.19107740128736	5.15979854318044	5.21296421221196	-0.018804552932155	0.948967045992857	0.981673120801678
Merged-chr7-114305651-4	chr7	114305562	114305762	+	692.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29546.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	3.60574595000004	3.91935949598505	3.85649965368649	3.63312964471835	3.71878575914461	3.33806588785172	3.83933999477022	3.42741716308457	-0.475594025225486	0.352447832449348	0.659568292805988
Merged-chr4-86668777-4	chr4	86668673	86668873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007408, intron 1 of 7)	intron (NM_007408, intron 1 of 7)	1286.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	5.49671001509319	5.45011663728075	5.55050779061531	5.7332603691012	5.40878740268524	5.19119363586593	5.47005973131532	5.15606022849254	-0.446706710912949	0.118575685837314	0.380943047367502
Merged-chr11-11557861-4	chr11	11557755	11557955	+	908.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68589.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	4.466429485735	4.37832406282908	4.38616439717894	4.56058576609956	4.51280220351655	4.00409544998735	4.14060868179432	4.29700906793023	-0.449145215881647	0.264296946450255	0.576455127446606
Merged-chr1-16747471-4	chr1	16747367	16747567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59011.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	6.29739092959856	6.19028277311839	6.67378959550423	6.8337551581047	5.87408141766096	5.52882004525517	6.17193688430646	6.13906462485519	-0.884821386696954	0.00159850625771814	0.0196409592470429
Merged-chr10-50657524-4	chr10	50657425	50657625	+	976.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 11 of 41)	intron (NM_198007, intron 11 of 41)	64856.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	5.08288171222108	5.41497064531021	4.79976480456046	5.20806017458876	5.51724830426124	5.36598978377118	5.80421559191419	5.61034941612933	0.757403309049163	0.0139232024205575	0.099652048777563
Merged-chr9-98330334-3	chr9	98330232	98330432	+	979.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357445, intron 1 of 3)	intron (NM_001357445, intron 1 of 3)	33762.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	3.9890285428973	3.74300841935887	4.19830908056371	4.11495367770524	3.64119117473114	3.7426486201125	3.6112619413195	3.84324857662769	-0.918588394528513	0.0482401305045792	0.226681979906205
Merged-chr17-81679812-3	chr17	81679713	81679913	+	628.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	ORR1D2|LTR|ERVL-MaLR	58574.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	3.14277635923212	3.07702283210245	3.19786848965316	3.34764632510037	2.73598747386502	3.07247591040645	3.01556952516011	2.7550033150767	-1.32009606199677	0.0362172232093438	0.189176321333961
Merged-chr13-49309267-4	chr13	49309172	49309372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015759)	promoter-TSS (NM_015759)	-64.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	6.99141545916642	7.07892198934944	7.3537944689167	7.09589610537821	7.19646515312546	7.32896187557755	7.17231184561223	7.3388423207505	0.16969012008587	0.367061580944749	0.671471106644306
Merged-chr9-51077190-4	chr9	51077136	51077336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033534)	promoter-TSS (NM_001033534)	-142.0	NM_001033534	244864.0	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	6.2337420967957	6.94582799587997	5.62424264760443	5.87279774863271	5.1433101651026	5.71891933233512	5.44855705122316	5.37521212742683	-1.35691195473262	0.000162205968420154	0.00305198483377694
Merged-chr4-115785000-4	chr4	115784848	115785048	+	966.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_181040, exon 1 of 9)	5' UTR (NM_181040, exon 1 of 9)	134.0	NM_181040	230649.0	Mm.109600	NM_181040	ENSMUSG00000028710	Atpaf1	6330547J17Rik|AI593252|ATP11|ATP11p	ATP synthase mitochondrial F1 complex assembly factor 1	protein-coding	4.42761251159989	4.69734746536258	4.71707865334741	4.39239452384102	4.82609541816081	4.60496356090804	4.69469364206882	4.75029662750058	0.371428456546199	0.291742184462073	0.60413455176522
Merged-chr12-117558122-3	chr12	117557992	117558192	+	887.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 3 of 27)	intron (NM_175930, intron 3 of 27)	41613.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	4.42383453543257	4.15628994548091	4.38728884338229	4.74838211938523	3.73223595041021	3.95022980491074	3.6911267164879	3.56955378660617	-1.97466795604955	3.10168687543114e-05	0.000747376337529834
Merged-chr12-21417719-4	chr12	21417603	21417803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011739)	promoter-TSS (NM_011739)	-267.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	8.32928500156462	8.42295884156034	8.32511952162856	8.56977722152274	8.3438944083425	8.29273236977397	8.4559275121129	8.11623132737266	-0.142950298395905	0.379842320696681	0.682282195090949
Merged-chr10-80873057-3	chr10	80872960	80873160	+	780.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6756.0	NM_001081688	432478.0	Mm.235302	NM_001081688	ENSMUSG00000059406	Tmprss9	Serase-1B	transmembrane protease, serine 9	protein-coding	3.40897689130511	3.64306661343888	3.84831610769775	3.47804758037875	3.26199429814171	3.33491032849053	3.45285283826669	3.34820936454124	-0.868140946687142	0.0986566193118872	0.344246262365842
Merged-chr12-71051251-4	chr12	71051101	71051301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081195, intron 11 of 23)	B3|SINE|B2	35234.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	6.22502874037251	6.07055994812017	6.0972041567572	6.21757596737492	5.50273241629432	5.60180334815323	5.54790795359755	5.76190870483738	-0.901637737966975	0.000279419669281283	0.00478902302908077
Merged-chr2-114175364-4	chr2	114175279	114175479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009702)	promoter-TSS (NM_009702)	-40.0	NM_001290788	11834.0	Mm.2545	NM_009702	ENSMUSG00000040383	Aqr	AW495846|mKIAA0560	aquarius	protein-coding	7.27682215959152	7.41568951488122	7.2575724933405	7.59029671394357	6.76356292870545	6.66194842566704	7.04437388621009	6.49604717416094	-0.884542392865264	3.01891113481581e-05	0.000730646296038948
Merged-chr1-153749812-2	chr1	153749699	153749899	+	963.125	f0_balb.idr|f0_c57.idr	intron (NM_011882, intron 1 of 8)	intron (NM_011882, intron 1 of 8)	373.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	4.99671099440682	5.04645724090827	5.13579030342055	5.26719297477377	5.31208243416177	5.30961583046495	4.86036850753962	5.42317354912778	0.21917807845884	0.486824344948649	0.7603696580653
Merged-chr11-77411488-4	chr11	77411412	77411612	+	915.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 4 of 13)	intron (NM_001291190, intron 4 of 13)	-52401.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	4.82261094275588	4.44675142444178	3.987499341479	4.76592023028514	4.69946823133768	4.34112213588268	4.43015039223492	4.68397497664931	-0.00372605025207009	0.992960053624084	0.997455796658417
Merged-chr1-166380144-4	chr1	166380044	166380244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030245, intron 1 of 7)	intron (NM_030245, intron 1 of 7)	977.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	6.57454327396654	6.7897832925653	6.78546300381555	6.77470659649578	6.78418057456285	6.56001178139035	6.650920145863	6.50408999077766	-0.144090278902684	0.48530993634659	0.759216653544759
Merged-chr3-84749430-3	chr3	84749339	84749539	+	914.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-66138.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	3.45467151253084	3.58288247084657	3.74796956811409	4.04093623212526	2.80992198548723	3.19173392068802	2.9952457380515	3.21390428459661	-2.77435230061014	3.21504242423309e-05	0.000769480513498611
Merged-chr9-21593507-4	chr9	21593360	21593560	+	904.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138303)	promoter-TSS (NM_138303)	-629.0	NM_138303	74766.0	Mm.475712	NM_138303	ENSMUSG00000032182	Yipf2	1300010K09Rik	Yip1 domain family, member 2	protein-coding	4.10286522753671	4.37356938894545	4.19132977361739	3.81738015172766	4.27946090850032	3.9754470479914	3.66413098496543	3.85128563027873	-0.415088660191309	0.38480103045392	0.686253571524344
Merged-chr16-17210199-4	chr16	17210098	17210298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033338, exon 1 of 1)	exon (NM_001033338, exon 1 of 1)	2063.0	NM_001033338	239731.0	Mm.86671	NM_001033338	ENSMUSG00000071636	Rimbp3	Gm1759|Gm603|RIM-BP3|mKIAA1666	RIMS binding protein 3	protein-coding	6.09867271504432	5.81020647198913	5.8427982506074	5.77743191775459	6.09219904222581	5.72917886529746	6.16115602145883	5.57595806647953	0.066113875309535	0.807513891913494	0.925788142750869
Merged-chr14-55874097-4	chr14	55874008	55874208	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001040072, exon 8 of 8)	3' UTR (NM_001040072, exon 8 of 8)	10148.0	NM_019820	56410.0	Mm.97163	NM_019820	ENSMUSG00000040380	Cbln3	-	cerebellin 3 precursor protein	protein-coding	4.82923440906088	5.03957475766821	4.96922014803329	4.9654099778696	4.86037218600617	4.36517143891754	4.69281092425423	5.02997264379296	-0.381909565091377	0.275804690710044	0.587751925991743
Merged-chr17-12416446-2	chr17	12416289	12416489	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008877, intron 17 of 18)	intron (NM_008877, intron 17 of 18)	37780.0	NM_008877	18815.0	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	2.74173747410885	3.07002364710346	3.01797599012837	2.78643543365025	2.919832115235	3.25057234481992	3.17961714132348	3.29562881677574	1.05642984020477	0.0783999208770491	0.303086463616526
Merged-chr6-145307461-4	chr6	145307363	145307563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	56911.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	8.474587933365	8.40066243822803	8.45592494885723	8.73809804234834	8.28718968056833	8.33265421684179	8.53662567869016	8.37240291462352	-0.185814126603212	0.25719531329375	0.568908455978614
Merged-chr5-122502321-6	chr5	122502254	122502454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009722)	promoter-TSS (NM_009722)	-129.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	5.92521249635093	6.12277196913039	5.52648635868438	5.74156385995764	6.19434332878217	6.25168260534923	6.25033227307081	5.82708389018177	0.468219738146145	0.0776370702194086	0.30130973321959
Merged-chr10-58351892-4	chr10	58351807	58352007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359116)	promoter-TSS (NM_001359116)	-56.0	NM_001359116	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	7.01614768697139	7.19466320513574	6.96740462618543	6.96835867772375	6.94777870804376	6.92230609269532	7.02982542398889	6.72484126419151	-0.174053982802415	0.373081850666242	0.676748038954446
Merged-chr2-167735074-4	chr2	167734974	167735174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43897.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	5.3699234287382	5.55271627696247	5.87175877286211	5.7699140689148	5.70452072974396	5.67049292553163	5.6044076103867	5.88911512384214	0.0960560621741813	0.724454202466472	0.89024956713846
Merged-chr15-63650302-4	chr15	63650201	63650401	+	789.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	158438.0	NM_031378	83492.0	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	4.27210626785601	4.42277374122101	4.27277880390691	4.2782563652095	3.96396303995784	4.21664718634181	3.97485078539999	3.87968588459788	-0.783366162432965	0.0569077503376778	0.249915890997382
Merged-chr15-81080601-4	chr15	81080434	81080634	+	870.535706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	24513.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	3.21737795593491	3.00200516289323	2.90652947712858	3.19755107903328	3.27837221856727	3.27178219634213	3.14948847283239	3.10052062401725	0.423660002790116	0.45546844724364	0.738955495643786
Merged-chr12-79646795-4	chr12	79646704	79646904	+	978.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	277929.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	5.49787012922126	5.75362921230414	6.00884319138536	4.86735706933746	5.33741602287435	5.70080729499229	4.85641413002588	5.43905627768431	-0.390104476633014	0.306730589345582	0.619092570117727
Merged-chr8-47867270-3	chr8	47867167	47867367	+	793.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 11 of 22)	intron (NM_133791, intron 11 of 22)	42785.0	NM_029383	75677.0	Mm.390033	NM_029383	ENSMUSG00000038064	Cldn22	2210404A22Rik|5330431C14Rik|9530051B05Rik	claudin 22	protein-coding	3.66985798983798	3.48887706385513	3.67036558673002	3.60997394482542	3.67514433662756	3.67647572808932	3.89156079774513	3.76953232513966	0.444791689599219	0.335209775238469	0.645574985284499
Merged-chr3-108085424-4	chr3	108085322	108085522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346665)	promoter-TSS (NM_001346665)	4.0	NM_001289720	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	6.50800530690791	6.01976737395241	6.1397346423809	6.5850102519933	6.39656036512026	6.54983668936585	6.34147232464859	6.48840606618058	0.140522942797577	0.564491775280282	0.806796423519025
Merged-chr5-31451481-4	chr5	31451380	31451580	+	988.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172993)	promoter-TSS (NM_172993)	-956.0	NM_172993	269639.0	Mm.259127	NM_172993	ENSMUSG00000062761	Zfp512	2500002M11Rik|AI450173|D230008H22|Znf512	zinc finger protein 512	protein-coding	5.33483294496287	4.79943174890999	5.09165192066799	5.18567534579421	5.21927183140258	5.33044564766552	5.19377774863588	5.01913277633523	0.143237536822833	0.647580915477609	0.851671445674231
Merged-chr5-105648932-3	chr5	105648815	105649015	+	907.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51054.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	3.76741804677588	3.48766259130569	3.67128004040007	3.75874494741248	3.48636953433092	3.43925888861575	3.70499222797063	3.56422617765574	-0.412994799567761	0.397225012553369	0.695634866983301
Merged-chr8-61907353-4	chr8	61907244	61907444	+	758.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4650.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	3.52343405796691	3.78784102078132	3.58496469681325	4.00608335772834	3.9695241911464	3.7607081051675	3.7380500040322	4.03217077902109	0.36056936077312	0.459088393030883	0.74170765693035
Merged-chr17-43538867-4	chr17	43538765	43538965	+	963.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254953, intron 2 of 2)	intron (NM_001254953, intron 2 of 2)	4774.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	5.45770639851275	5.67175455972803	5.53637728281532	5.45641434097318	4.86254613974801	5.52120004328571	5.16629712275521	4.62086902587064	-0.828423388749115	0.014056150797956	0.100291759559711
Merged-chr19-41206946-3	chr19	41206839	41207039	+	795.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011904)	promoter-TSS (NM_011904)	-165.0	NM_011904	24087.0	Mm.89983	NM_011904	ENSMUSG00000025013	Tll2	-	tolloid-like 2	protein-coding	3.6515361512145	3.55677741271788	3.65206135286087	3.39201736899542	3.46590257321641	3.60475455147846	3.73397124382246	3.59786081401752	0.142801668506078	0.769145601685307	0.90970596670641
Merged-chr9-16214198-2	chr9	16214098	16214298	+	744.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	MTA_Mm|LTR|ERVL-MaLR	164033.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	3.37182287586342	3.27874696323191	3.09518673057884	3.01262942252534	2.99225571919832	3.07558508565377	2.815003116254	3.41899540491444	-0.390575041584967	0.525303952727532	0.783229855070132
Merged-chr1-51500393-4	chr1	51500299	51500499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22000.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	5.95717494190193	6.03418388047916	5.84853669914903	6.03882871570271	5.73160303891783	5.42624683741196	5.64823646713376	5.59163076913581	-0.597321891441592	0.0193217688864242	0.125005617089521
Merged-chr12-65111671-3	chr12	65111597	65111797	+	800.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178912, intron 14 of 22)	RLTR18|LTR|ERVK	36091.0	NM_178912	104806.0	Mm.374847	NM_178912	ENSMUSG00000055884	Fancm	AI427100|C730036B14Rik|D12Ertd364e	Fanconi anemia, complementation group M	protein-coding	2.94001128801173	2.98028752907962	2.94039396053307	3.01655536025667	2.89549041572033	2.55801364165002	2.60756429346715	2.93884635960479	-0.943921720206835	0.161242465059531	0.449940309725276
Merged-chr8-105225164-4	chr8	105225070	105225270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145604)	promoter-TSS (NM_145604)	-18.0	NM_145604	234678.0	Mm.27186	NM_145604	ENSMUSG00000031889	D230025D16Rik	BC006874|Lin10	RIKEN cDNA D230025D16 gene	protein-coding	7.19687343393766	7.5014379565203	7.1867206253432	7.26312960571955	7.41809537596892	7.28090273961269	7.34121818876673	7.37273252993013	0.0833724813310968	0.647552455314539	0.851667779256884
Merged-chr13-13393598-4	chr13	13393488	13393688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031999)	promoter-TSS (NM_031999)	36.0	NM_031999	83924.0	Mm.379269	NM_031999	ENSMUSG00000021306	Gpr137b	AI788917|AU016435|AW546472|C730041E01|C80550|C80741|D13Abb1e|Tm7sf1	G protein-coupled receptor 137B	protein-coding	6.16436907251557	6.30180019264292	6.50914302130171	6.04722326875883	6.28326491770998	6.2123716997104	6.66529749034806	6.47245501535061	0.245230980132783	0.311682642366519	0.623665218229603
Merged-chr11-21225197-4	chr11	21225088	21225288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13844.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	7.56609132820295	7.2633364911692	7.44070043110301	7.36150331716394	7.40600976868659	7.5184855427585	7.35541512612003	7.37700393012181	0.00950637813395567	0.957311294563388	0.984815156534365
Merged-chr9-123930970-6	chr9	123930805	123931005	+	946.227783	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	37787.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	3.51173163545409	3.32359910921027	3.41233021656191	3.02959098949769	2.95931813819095	3.29883445763397	3.23369907690793	3.24428784171103	-0.517081335074298	0.371923321378306	0.675931720312192
Merged-chr13-94094463-3	chr13	94094337	94094537	+	670.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 1 of 3)	intron (NM_172589, intron 1 of 3)	36641.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	3.39625465107861	3.70433116879601	3.79394121025023	3.64289485380625	3.17815966613627	3.38807130325821	3.32524265697376	3.20795758770437	-1.31682175234688	0.0141130266846329	0.10056573494699
Merged-chr11-72660553-4	chr11	72660446	72660646	+	955.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025985, intron 1 of 5)	PB1D9|SINE|Alu	-29456.0	NM_009671	11736.0	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	4.38003000163871	4.27950516513565	4.33494571069639	4.61453652101561	4.92194453140331	4.20545463746503	4.26909683984281	4.82710866535504	0.417283313458557	0.318440847579631	0.63033847433642
Merged-chr15-88751936-2	chr15	88751855	88752055	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_181412, intron 1 of 2)	CpG	244.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	5.46906759691884	5.69844619852019	5.71540529684566	5.40848857085218	5.68653221188416	5.91407513221193	5.84791610963973	5.80672155087792	0.404380648057176	0.123356316151504	0.389477432015077
Merged-chr14-54569198-3	chr14	54569111	54569311	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010590, intron 7 of 7)	intron (NM_010590, intron 7 of 7)	8450.0	NM_010590	16475.0	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	3.31497546552755	3.48967114751422	3.37484298122733	3.29169960442159	3.3618507115793	3.36583631548871	3.47209764417478	3.72570215697784	0.413814027717267	0.41839866875671	0.711912368071791
Merged-chr10-94417886-4	chr10	94417793	94417993	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	-96964.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	4.96022257956954	4.81560921481418	4.68779684939651	4.9586908124839	4.30347087570944	4.61315239440225	4.32117085138704	4.56496962637963	-0.915594204553941	0.0108208763537493	0.0835721020919862
Merged-chr6-57534936-4	chr6	57534846	57535046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175523, intron 1 of 6)	intron (NM_175523, intron 1 of 6)	480.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	4.68436729621962	4.13587683065449	4.82233073870195	4.23933224000377	4.42533778837138	4.48672378912485	4.58862332997101	4.75237055352323	0.175902443793661	0.662956078937169	0.860346663968351
Merged-chr19-46483788-4	chr19	46483670	46483870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 11 of 11)	intron (NM_001025391, intron 11 of 11)	-17878.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	5.93728548124659	5.83791934305904	6.27670479413559	6.2422202813112	5.67355674805337	5.89244880271515	6.22701494005161	6.00076939274403	-0.216516505203762	0.418079696259951	0.711628236434313
Merged-chr11-118379639-6	chr11	118379509	118379709	+	850.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22350.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	3.69298945505129	3.41748220422314	3.45554409191865	3.21009154329884	3.36431878795774	3.26944897929995	3.15021277134353	3.50547087407362	-0.413654793650674	0.451603227886846	0.736155915050826
Merged-chr14-62329737-3	chr14	62329638	62329838	+	794.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2330.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	3.78989174382249	3.55131294835095	3.50641998061185	3.63707110249439	4.19735902658453	3.80313326656555	3.774680951143	3.97742143824045	0.965092552960914	0.037456296616172	0.193237786246467
Merged-chr7-28598260-4	chr7	28598157	28598357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027470)	promoter-TSS (NM_027470)	-73.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	7.66830960976316	8.15816059551699	7.53247958778244	7.82620651231546	8.01737203799089	7.94698319154708	7.99647640741015	7.96999027018732	0.208270431750995	0.271087750763042	0.582882884592877
Merged-chr19-53325837-4	chr19	53325771	53325971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	-3542.0	NM_010847	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	4.67831352193492	4.91589636257343	5.59004195770975	5.46114975145551	5.1975366993538	5.356879976676	5.41487660527125	4.97036426214019	0.0380968498205838	0.916521735620905	0.969045329388458
Merged-chr1-34823556-4	chr1	34823473	34823673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 3 of 6)	intron (NM_001160236, intron 3 of 6)	19477.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	6.06861743073902	6.11472873738118	5.95880165718531	6.11104551487377	6.34719518433673	6.06479768543768	6.47890886159254	5.85840287347302	0.22795657258384	0.362758158358176	0.667997178914902
Merged-chr1-186204377-3	chr1	186204275	186204475	+	798.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87065.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	3.45996432360498	3.36783350996804	3.56341868515837	4.31645982668503	2.85073740809399	2.89483041682327	2.93698179006581	3.09150969159708	-3.41943426133074	6.13976333348596e-06	0.000178303637011096
Merged-chr3-151424563-3	chr3	151424515	151424715	+	778.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13267.0	NM_133222	170757.0	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	3.18248306383232	2.85344113961525	3.45681478480695	3.16791203285587	2.51041342781057	2.64507258312666	2.53135491249886	2.69171857751956	-3.28404489977872	9.31886619519232e-05	0.00191466009772199
Merged-chr10-127617017-10	chr10	127616861	127617061	+	786.955017	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	4187.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	3.29578400008315	3.65537659539369	3.89721966445267	3.88829249306804	3.79017134021813	3.54217045875844	3.69420507788035	3.54604217216244	-0.188366513161202	0.715342686016248	0.886136043298826
Merged-chr2-52524992-2	chr2	52524892	52525092	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	33619.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	3.05509982716335	3.23826741768073	3.42496156922104	3.10053111287833	2.95695574693351	2.96534092134361	2.84976895171915	3.05395678426244	-1.04448548403215	0.0822063849915106	0.31128485660563
Merged-chr3-104864460-4	chr3	104864362	104864562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355044)	promoter-TSS (NM_001355044)	43.0	NM_009797	12340.0	Mm.19142	NM_009797	ENSMUSG00000070372	Capza1	CAPZ|CAZ1|Cappa1|capZ alpha-1	capping protein (actin filament) muscle Z-line, alpha 1	protein-coding	6.56377364495614	6.79013562617404	6.35175176204754	6.46584264304265	6.94710116106199	6.9644822737864	6.53138411581825	6.54380102159188	0.310143576722828	0.179514083174829	0.475749514329241
Merged-chr1-165766671-4	chr1	165766578	165766778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 2 of 4)	intron (NR_149310, intron 2 of 4)	2920.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	6.82224688562811	6.84922483173181	6.61191182248583	6.90842915283259	6.97039946259532	6.98586709543715	6.71757983316209	6.89934401919719	0.12324524914058	0.539874732981544	0.792406302070178
Merged-chr11-3184306-2	chr11	3184209	3184409	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 4 of 32)	intron (NM_030207, intron 4 of 32)	9154.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.07982755148294	4.48919196741543	5.32738650269288	5.00754314656985	5.16649377890649	5.55389754233594	4.87497342494589	5.50560223029701	0.546318444421964	0.134138717102691	0.407802101554934
Merged-chr11-29373568-4	chr11	29373483	29373683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176841)	promoter-TSS (NM_176841)	-589.0	NM_176841	108686.0	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	7.59188469720318	7.94773066026903	7.58419078618679	7.82280618071555	7.65093671388725	8.02820630292601	7.83550602981425	7.57902480484341	0.0386162126580173	0.839756672219295	0.939089397830278
Merged-chr9-40638609-5	chr9	40638531	40638731	+	806.700012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47333.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	3.03744239144642	3.18526429506497	3.57526580231873	2.80322432149054	3.41689773337821	3.74481627582136	3.34891793302528	3.5230683675376	1.19837404098725	0.045059731553424	0.217047210681543
Merged-chr15-38374000-4	chr15	38373874	38374074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73263.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	7.95260467908392	8.24526287289542	8.0670202759191	8.00450773182747	8.0463945533742	7.78032214163871	8.05363670014992	7.40862442315942	-0.281911639870138	0.157121428501414	0.443500264079873
Merged-chr12-87299862-4	chr12	87299847	87300047	+	758.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290302)	promoter-TSS (NM_001290302)	-242.0	NM_001290302	217738.0	Mm.219363	NM_001290302	ENSMUSG00000050671	Ism2	Gm264|Thsd3	isthmin 2	protein-coding	3.73885027891259	3.45370675976403	3.4758468882305	3.52332845688797	3.28503675606992	3.70588148156538	3.46275562463957	3.87222032163852	0.142800200598336	0.782418217954205	0.91529005173258
Merged-chr14-27376272-4	chr14	27376179	27376379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 3 of 10)	intron (NM_027871, intron 3 of 10)	14890.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	6.77493739000892	7.01779483727174	6.73264017273023	6.50623304843264	6.9027690621211	6.8019220589933	6.74167540887222	6.7854716756136	0.0745159182124205	0.728703492931254	0.892191512842823
Merged-chr6-124505225-4	chr6	124505129	124505329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181344, intron 2 of 5)	L3|LINE|CR1	-7392.0	NM_023143	50909.0	Mm.333375	NM_023143	ENSMUSG00000055172	C1ra	AI132558|C1r|mC1rA	complement component 1, r subcomponent A	protein-coding	6.52386975503064	6.42365257916293	6.37424641775993	6.50850804627242	6.33169034064809	6.15955223136691	6.30572961044127	6.40477445506765	-0.232360540153786	0.28105227165458	0.593153291080506
Merged-chr13-102684896-4	chr13	102684782	102684982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8665.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	5.33758498381666	5.70516920616894	5.55640447209818	5.80052243682632	5.97318845405879	5.96557028188332	5.83082715325421	5.90078593442226	0.471289652892864	0.0744592367922681	0.294113985329459
Merged-chr11-49103467-3	chr11	49103364	49103564	+	865.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10293.0	NM_146337	258334.0	Mm.390388	NM_146337	ENSMUSG00000047511	Olfr1396	MOR276-2	olfactory receptor 1396	protein-coding	3.98517276841779	3.90108671291991	3.48996696828378	3.49823735180244	3.93602392691121	4.06234652435363	3.9679736251972	3.98329751567323	0.738072215306189	0.113488839053503	0.372482227831848
Merged-chr10-78096261-4	chr10	78096172	78096372	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26904.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	5.42023604761004	5.06454722045197	5.30796650372837	5.39447050583179	5.41947400205341	5.03078586990435	5.05719883048874	5.44411612564203	-0.0833444235567284	0.786875929530366	0.917218685117941
Merged-chr5-105694322-6	chr5	105694264	105694464	+	992.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-5605.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	3.87678625834478	3.33653875421775	3.50818441370325	3.65384375097603	3.76264509290043	3.68576365877634	3.6105257936745	4.12293431714194	0.601458833315683	0.232221320363976	0.541841256442921
Merged-chr2-129315997-4	chr2	129315897	129316097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6025.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	6.20441952050771	5.96800435750235	6.3038097254997	6.32812819839505	6.4073091085924	6.74987542415071	6.57130082151374	6.57027777832784	0.52939729042665	0.0202214576060871	0.128996516485362
Merged-chr2-14228697-4	chr2	14228593	14228793	+	935.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008625)	promoter-TSS (NM_008625)	-721.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	4.88088735528928	4.56696167283138	4.81212523997138	5.12469198918724	4.60449429200254	4.70986884144264	4.59829170307207	4.65731778483961	-0.499254503223211	0.160219640945926	0.448239942214445
Merged-chr14-54365467-3	chr14	54365372	54365572	+	856.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026936, intron 3 of 9)	intron (NM_026936, intron 3 of 9)	4631.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	3.9326332407893	3.76688445400617	3.48076732882515	3.89825053813667	3.48113813822064	3.65577911214906	3.52648770475411	3.47903866296308	-0.801306579144286	0.104680917309138	0.35576242418157
Merged-chr2-170155111-4	chr2	170154989	170155189	+	974.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12414.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	5.22141822111612	4.92716091237509	4.53675513464351	4.72143108995616	5.0584346667625	5.08071766314465	4.8836149100528	4.93915044700618	0.252345816982111	0.462048554486964	0.74358800922082
Merged-chr1-132212309-2	chr1	132212209	132212409	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033250, intron 1 of 3)	intron (NM_001033250, intron 1 of 3)	-14005.0	NM_001311103	213409.0	Mm.426321	NM_001033250	ENSMUSG00000079330	Lemd1	4930540I23Rik|6430514M23Rik|AI428128|LEMP-1	LEM domain containing 1	protein-coding	3.2017612396094	2.9329262691287	3.14276033500941	3.17603487389375	3.17154226490777	3.47739755433867	3.19023945895577	3.2572221297928	0.595923457482812	0.283056125754553	0.595256654211106
Merged-chr1-86229591-4	chr1	86229513	86229713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	-73608.0	NM_145222	227327.0	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	7.08624983274072	6.81913449641043	6.97019367217483	7.22099676043047	6.49679296961979	6.5053543061502	6.83283199924884	6.56290039060485	-0.617597782564809	0.00390540762023599	0.0393353628131848
Merged-chr16-91739235-4	chr16	91739120	91739320	+	851.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	B4A|SINE|B4	9849.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	4.6240900821971	4.51965208325394	4.46755737945621	4.62337988187677	4.21717550573827	4.59785333619314	4.31652560379207	4.4647170520867	-0.385369288624911	0.299188085506525	0.611487916419371
Merged-chr6-73709804-4	chr6	73709722	73709922	+	816.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-238801.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	4.2206160824261	4.47151127705027	4.44998174430774	4.99226053242654	4.32354084096559	4.44613203287585	4.47054982508678	4.21875273434701	-0.509448466821326	0.222027737933308	0.530047563717821
Merged-chr2-165992615-4	chr2	165992487	165992687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008679)	promoter-TSS (NM_008679)	-50.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	6.8915266409972	6.72907125675216	6.66799639935462	6.90538385265624	7.31665899970627	7.39371426300146	7.15992724996537	7.20172412111274	0.635008616728889	0.000927378269086606	0.0126608692842484
Merged-chr16-97543395-1	chr16	97543295	97543495	+	619.0	f0_balb.idr	intron (NM_013606, intron 2 of 13)	intron (NM_013606, intron 2 of 13)	7312.0	NM_013606	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	3.41275365754923	3.48723517482979	3.19026848346269	3.21091192989304	3.276609413478	3.36205513933386	2.98553959137858	3.12652155811399	-0.488130776978273	0.387199593560185	0.688133554203897
Merged-chr8-70540481-4	chr8	70540410	70540610	+	884.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	835.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	4.04983424237849	3.66634304701898	3.51220225620277	3.75471894773789	4.0236405686062	4.08226381058883	3.84470966594754	4.13291032187034	0.740678940005741	0.104028524591014	0.354502868371773
Merged-chr5-31298820-4	chr5	31298719	31298919	+	908.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144909, intron 3 of 18)	intron (NM_144909, intron 3 of 18)	1238.0	NM_144909	231103.0	Mm.100043	NM_144909	ENSMUSG00000059434	Gckr	GKRP	glucokinase regulatory protein	protein-coding	4.94557109009343	4.36206286090127	4.63502028674306	4.99055106174913	4.71921149540285	4.59880180347862	4.40266064227724	4.37230426999402	-0.495470887119062	0.202273147784708	0.504732469151556
Merged-chr6-113237731-4	chr6	113237635	113237835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026849)	promoter-TSS (NM_026849)	-108.0	NM_001362183	97287.0	Mm.197816	NM_026849	ENSMUSG00000030269	Mtmr14	1110061O04Rik|AW553738|C76151	myotubularin related protein 14	protein-coding	8.24266821644385	8.35759908256247	8.01586170563317	8.24307377896995	8.2018255382064	8.42748133645641	8.18187096234601	8.28963969450012	0.0671395447930822	0.680762498022807	0.868956507598538
Merged-chr7-121707474-4	chr7	121707370	121707570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033173)	promoter-TSS (NM_001033173)	-217.0	NM_001033173	76179.0	Mm.122538	NM_001033173	ENSMUSG00000063317	Usp31	6330567E21Rik|mKIAA1203	ubiquitin specific peptidase 31	protein-coding	7.33786880205238	7.07527599465992	6.84052170083928	7.22696139250773	7.38408476573971	7.30949613794642	7.47071150786928	7.35392260810542	0.328075843752153	0.0896086570723647	0.326791509371688
Merged-chr1-171287977-4	chr1	171287888	171288088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013919)	promoter-TSS (NM_013919)	-27.0	NM_013919	30941.0	Mm.27510	NM_013919	ENSMUSG00000053483	Usp21	ESTM28|Usp16|Usp23|W53272	ubiquitin specific peptidase 21	protein-coding	6.75459425961313	6.59654849597643	5.98687780560062	6.49684319683256	6.64866442920953	6.3086951530645	6.6797197705503	6.85596804795661	0.21684182853613	0.390093188878868	0.690245822100553
Merged-chr11-102138546-4	chr11	102138448	102138648	+	830.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6965.0	NM_145829	217214.0	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding	3.74097032394575	3.92753643070694	3.57335063708963	3.72178966094998	3.89088559411542	3.74893872248409	3.77744385704257	3.88796757485975	0.243289358196227	0.591034271865497	0.821418854067929
Merged-chr8-84832376-5	chr8	84832371	84832571	+	970.3666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033145)	promoter-TSS (NR_033145)	189.0	NM_183358	102060.0	Mm.489649	NM_183358	ENSMUSG00000033751	Gadd45gip1	2310040G17Rik|AI425883|Crif1|MRP-L59|Plinp1	growth arrest and DNA-damage-inducible, gamma interacting protein 1	protein-coding	4.50174200165361	4.75496402064914	4.69803350247904	4.47748755398657	4.21791313240414	4.97139649353999	4.15036092266079	4.54108358013776	-0.234899737766077	0.567823021575003	0.808331754798167
Merged-chr2-11187371-4	chr2	11187287	11187487	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	15005.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	4.79955002361001	4.95292897239705	4.6695531380961	4.93102789262618	5.34357749253641	5.16905674985765	5.22534372932825	5.62316461288366	0.938556374841253	0.00300840199127402	0.032056144511511
Merged-chr19-3378382-1	chr19	3378282	3378482	+	798.0	f0_c57.idr	exon (NM_013495, exon 15 of 19)	exon (NM_013495, exon 15 of 19)	-10475.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	4.11485764734141	4.11620956764011	4.01484471739728	4.24773289989672	4.27361323837563	4.50545224415641	4.19028484364602	4.11302004783197	0.34830740733916	0.387904165992731	0.688726934413767
Merged-chr8-34108125-1	chr8	34108025	34108225	+	1000.0	f1_balb.idr	promoter-TSS (NM_001293758)	promoter-TSS (NM_001293758)	-311.0	NM_001293758	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	4.08975805478236	4.34584037451324	4.31877761378764	4.30902425245422	4.3153039902098	4.05336748339405	4.16861104039141	4.27357596913065	-0.150608350163017	0.703608687105567	0.880813287948911
Merged-chr5-76706011-3	chr5	76705940	76706140	+	735.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114326.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	3.10974590152394	3.45154770436637	3.11013183063322	2.78733655610482	3.26206680663624	2.94577297990727	3.21548930212551	3.3345779998507	0.250183965078175	0.684400029866048	0.870733189015237
Merged-chr8-84661265-3	chr8	84661149	84661349	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010499)	TTS (NM_010499)	1603.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	4.87937143632968	5.03961910105143	4.95191662751482	4.41685438658699	5.06712599187601	5.05486486804917	5.1199304974608	4.98293075659107	0.465050903725622	0.178101319074971	0.473852334381104
Merged-chr10-116949891-4	chr10	116949802	116950002	+	706.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038025)	promoter-TSS (NR_038025)	551.0	NM_001359645	216363.0	Mm.336394	NM_001003950	ENSMUSG00000064181	Rab3ip	B230311A06|Gtpat12|Rabin3	RAB3A interacting protein	protein-coding	3.63555867196812	3.69812239490307	3.63603266866786	3.61504041533691	3.96683038375234	3.86702704068906	3.73185906274559	4.18851850254492	0.886824886415783	0.0494285043957806	0.230075166822881
Merged-chr7-64391628-2	chr7	64391528	64391728	+	924.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355124)	promoter-TSS (NM_001355124)	608.0	NM_026483	67973.0	Mm.26973	NM_026483	ENSMUSG00000030521	Mphosph10	2810453H10Rik|5730405D16Rik|AI326008	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding	3.63706068813084	3.35244970546267	3.16268627996268	3.2391028513972	3.46476630880868	3.70539516520387	3.62183449448462	3.7311066113824	0.92131456795541	0.0730606099452664	0.290914139365301
Merged-chr2-35433645-4	chr2	35433565	35433765	+	884.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	27784.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	3.94969107471266	4.04270846766087	3.95025447163698	4.07858945357908	4.0808679356256	3.65752840928798	4.11897145996071	4.2588845833247	0.104197638448619	0.812785999772563	0.927656717651261
Merged-chr17-35879751-4	chr17	35879660	35879860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026987)	promoter-TSS (NM_026987)	-18.0	NM_026987	69192.0	Mm.390986	NM_026987	ENSMUSG00000024422	Dhx16	2410006N22Rik|DBP2|Ddx16|mKIAA0577	DEAH (Asp-Glu-Ala-His) box polypeptide 16	protein-coding	7.65102811013417	7.66194929021663	7.57476012133111	7.45804436934322	7.74995116288806	7.82894649605156	7.51073332928913	7.4486081296105	0.0832584384462842	0.646794210210952	0.851401409677112
Merged-chr4-129817872-6	chr4	129817825	129818025	+	740.1611330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2554.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	3.33783876267933	3.51301917693951	3.88014985396255	3.25002655311761	3.44341793617647	3.45294924715417	3.44184546100669	3.33658054858012	-0.300411514756234	0.577992199280151	0.814391164493464
Merged-chr12-44209280-1	chr12	44209180	44209380	+	1000.0	f0_balb.idr	intron (NM_013760, intron 1 of 2)	intron (NM_013760, intron 1 of 2)	788.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	5.03998080172759	5.2308546392987	5.07412686140528	4.78185597534315	5.25708432666089	5.11038017674746	4.79802854011593	5.0706634445361	0.0933145475777003	0.776888703413517	0.913015118902433
Merged-chr18-38298177-4	chr18	38298064	38298264	+	996.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361267, intron 2 of 9)	intron (NM_001361267, intron 2 of 9)	1359.0	NM_001164621	56736.0	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding	4.39935355839505	4.06693417757627	3.85635649833895	3.89783029789394	4.41623617755985	4.03178916761139	3.89590219216243	4.36035171243802	0.354818970247047	0.431180063715765	0.721506070940063
Merged-chr17-57194071-4	chr17	57193943	57194143	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019418, exon 1 of 4)	exon (NM_019418, exon 1 of 4)	138.0	NM_019418	50930.0	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	4.43360225036063	4.88883553843879	4.79439951540301	4.65790967757956	4.55738886175918	4.56501489433865	4.50310212430413	4.79117278885543	-0.210026963147941	0.557408958959941	0.802617933158208
Merged-chr2-84620660-3	chr2	84620562	84620762	+	797.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355064, intron 4 of 18)	intron (NM_001355064, intron 4 of 18)	28818.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	3.62756309273883	3.11217280249622	3.27586825165464	3.33606531553591	3.38617982353903	3.05687332864841	3.31965771925257	3.21492289259826	-0.337033957395364	0.551004746877363	0.798799956417849
Merged-chr17-87105984-3	chr17	87105866	87106066	+	842.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1713.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	3.18774934195723	2.97422758950448	3.47334462772578	3.70006773263583	3.23897135204051	3.29970320936837	3.29750153244809	3.52136274551882	-0.111844121527284	0.851528360549887	0.944007369647391
Merged-chr15-59089933-4	chr15	59089825	59090025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-7899.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	6.11614871943488	6.16063792815557	6.17642980122807	6.27498499798532	5.9577406890523	5.86779083926948	6.21923104449366	5.91665561264971	-0.29967255147317	0.20531999073184	0.508859472252119
Merged-chr10-95679006-4	chr10	95678922	95679122	+	943.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-114876.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	5.13699129103374	4.4196427593795	5.10898544271301	4.76386780067469	4.73643438920955	4.74825154943519	4.6755775904579	4.91653982306403	-0.219406735724428	0.549797457166969	0.798147832027397
Merged-chr6-124271275-4	chr6	124271178	124271378	+	899.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33373.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	4.6839888689561	4.37686278425808	4.32281183697786	4.4952343606129	4.2314018156563	4.5854920912737	4.43494903913154	4.53352229536157	-0.0759199622177037	0.840605895760233	0.939330701973652
Merged-chr11-3161399-3	chr11	3161265	3161465	+	929.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 9 of 32)	intron (NM_030207, intron 9 of 32)	32098.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.00147319493164	5.40122348065676	5.93499630313405	5.9166825235712	3.87943740653961	4.26831860115181	4.10845888736126	4.18846857088871	-3.89701881563688	4.47294044492081e-19	1.33772868877739e-16
Merged-chr6-136554977-4	chr6	136554863	136555063	+	933.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	36112.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	5.50639150409465	5.40130543043746	4.98349386252301	5.14056432122258	4.66791680042635	4.85579583205664	4.47036102849591	4.4367047379883	-1.31191906910739	0.000218266422227428	0.00390758196126583
Merged-chr9-122349333-4	chr9	122349229	122349429	+	910.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2287.0	NR_152865	67469.0	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	5.09923255404579	4.86301508389207	5.23911308707423	5.29839610118593	4.36632948119498	4.38824709537533	4.49138844945579	4.59855720691777	-1.44504641754143	4.55170248419704e-05	0.00104242481056197
Merged-chr1-86358982-5	chr1	86358855	86359055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015507)	promoter-TSS (NR_015507)	500.0	NM_010880	17975.0	Mm.154378	NM_010880	ENSMUSG00000026234	Ncl	B530004O11Rik|C23|D0Nds28|D1Nds28|Nucl	nucleolin	protein-coding	6.13305767159506	6.3668829013269	6.31441356093908	5.92102794767322	6.61581077278123	6.81595031601915	6.18555832883938	6.56254233957099	0.566656987435265	0.0226399151608499	0.138993144836479
Merged-chr10-96502214-4	chr10	96502121	96502321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-114780.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	6.53910488344052	6.46575921247706	6.92309373740771	6.74268060326308	6.28988550765453	6.41157109029909	6.40737354242966	5.98283092250984	-0.584747906237698	0.0128853618252373	0.0944816606326724
Merged-chr1-36572930-4	chr1	36572806	36573006	+	843.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-14525.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	4.3086476594744	4.12736156084169	4.26617576367979	3.87944023327167	4.12499145422511	4.52102897605577	4.20273382164568	4.30656877351928	0.378719258217138	0.361410777207719	0.666724030938332
Merged-chr4-134497573-1	chr4	134497473	134497673	+	785.0	f1_balb.idr	intron (NM_001285849, intron 1 of 2)	intron (NM_001285849, intron 1 of 2)	532.0	NM_001285849	71904.0	Mm.142343	NM_027995	ENSMUSG00000037348	Paqr7	2310021M12Rik|AV001994|BB007237|Mpra|PGLP|mPR	progestin and adipoQ receptor family member VII	protein-coding	2.96025815726283	2.91514786494185	2.96062683709898	2.84857833212983	2.71354085748483	3.13200804385817	3.06653778410312	3.07716406418436	0.357109047536637	0.5540561284	0.800510731013571
Merged-chr2-33429523-4	chr2	33429387	33429587	+	836.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085507, intron 1 of 2)	L2a|LINE|L2	1837.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	3.81180009404814	3.66817786058719	3.90953870750935	4.05439312976395	3.97674696830225	3.36909879213923	3.79666732401752	3.90717811897123	-0.246156030349266	0.622177417275003	0.838257204751329
Merged-chr6-17586953-3	chr6	17586885	17587085	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50025.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	3.65767401935227	3.58988047987553	3.65817447499898	2.9525242162057	5.71391773738716	5.19574108982066	5.64421085168398	5.1295425160514	5.25601919833988	5.18788545211743e-28	4.92357998128356e-25
Merged-chr2-101796555-4	chr2	101796534	101796734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	CpG	1073.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	6.48166553391288	6.77739942936579	6.30459385714943	6.35526863758908	6.42459176967571	6.53704982490127	6.25317218030701	6.42734771769085	-0.112699031085266	0.624145498555236	0.839288391771922
Merged-chr10-59223311-2	chr10	59223211	59223411	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172939, exon 1 of 1)	exon (NM_172939, exon 1 of 1)	1389.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	3.70079081923472	4.34643393139696	4.13237211644684	3.64028320895275	4.26856663512112	4.51221769098965	4.01955907924243	3.98421127136991	0.587616079089986	0.219356454185819	0.526898155856389
Merged-chr17-15065795-4	chr17	15065701	15065901	+	826.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12742.0	NM_001034891	381062.0	Mm.393767	NM_183133	ENSMUSG00000036552	Ermard	2210404J11Rik|2410011O22Rik|AI448938	ER membrane associated RNA degradation	protein-coding	4.31607784977782	4.02107370199567	3.90278293366503	3.99118172964347	4.15443141753747	4.12956979497884	4.03880589211484	4.27445437455002	0.238754401817942	0.564413636865575	0.806779626043352
Merged-chr11-44617121-4	chr11	44616964	44617164	+	833.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1036.0	NM_001290711	13591.0	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	3.07327347553835	2.85979726397105	2.90302584915301	2.76586270082217	2.81573085420579	2.88085169637432	2.89267498820762	2.90157825665974	-0.115872996005629	0.848562602753644	0.942786711901439
Merged-chr10-76352110-4	chr10	76352010	76352210	+	971.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008787, intron 41 of 41)	ORR1E|LTR|ERVL-MaLR	-6819.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	4.79472368381204	4.89008383527041	5.02275565476778	5.32796930562477	5.08345975997848	4.7062450018025	5.52469416951757	5.27031805300947	0.260602383502867	0.468558397032514	0.747803507343786
Merged-chr6-47455523-4	chr6	47455391	47455591	+	974.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355550, intron 1 of 21)	intron (NM_001355550, intron 1 of 21)	734.0	NM_001355550	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	4.78281457314186	4.46624925260949	5.07999312249979	5.2655099797487	4.8536449937961	4.2524004606068	4.37849147203289	4.98531611194767	-0.579537363066394	0.170742788526028	0.463937278381974
Merged-chr16-77041748-4	chr16	77041649	77041849	+	978.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 3 of 23)	intron (NM_013918, intron 3 of 23)	27680.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	5.11176913674401	5.35352999455835	5.70857751811883	5.3994114297441	4.99113313058813	4.80126308556575	5.27858432310349	5.44186685238204	-0.474048005980824	0.150207859577624	0.432790043591146
Merged-chr2-167419378-4	chr2	167419276	167419476	+	934.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2334.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	4.21939252839427	4.39443580785306	4.007661682276	3.90109806478127	4.90953114666566	4.69664301824836	4.61392111501119	4.21746052356197	1.17681012938402	0.00438814478942608	0.0430997320224312
Merged-chr2-153058555-1	chr2	153058455	153058655	+	823.833313	f1_c57bl6.idr	Intergenic	Intergenic	-7400.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	2.19162822821308	2.52945251907494	2.27506599572185	1.95472325901156	2.49442397505873	2.80517866401714	2.737960985843	2.74888023255735	2.64789087211292	0.00326664596660154	0.0341209734844859
Merged-chr8-106887952-4	chr8	106887851	106888051	+	903.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145412, intron 1 of 3)	intron (NM_145412, intron 1 of 3)	5642.0	NM_145412	214987.0	Mm.490308	NM_145412	ENSMUSG00000046691	Chtf8	5830457O10Rik|Ctf8|Derpc	CTF8, chromosome transmission fidelity factor 8	protein-coding	4.59135274390447	4.50221356126768	4.41940937865932	4.64588780038422	4.62394650446577	4.6828743234089	4.88739295084608	4.62884512003022	0.336126592924561	0.336878138474585	0.646769375674115
Merged-chr10-19934749-6	chr10	19934693	19934893	+	839.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008580, exon 1 of 30)	exon (NM_008580, exon 1 of 30)	267.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	4.23369823053946	4.67908268719188	4.10243612779601	3.54733769229998	3.8551764014686	3.97195756250557	3.8320598987639	4.00388734312503	-0.749184200919606	0.142419527928212	0.420006611634166
Merged-chr12-80109850-3	chr12	80109774	80109974	+	858.714294	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007564, exon 2 of 2)	exon (NM_007564, exon 2 of 2)	3139.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	4.24355048066911	3.66208636638121	3.35174423545603	2.92157091067287	3.58005036706784	3.99926336637918	3.47225627831353	4.16763341851524	0.52415132081782	0.412119460025853	0.707360767908854
Merged-chr11-77444997-4	chr11	77444763	77444963	+	898.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 13 of 14)	intron (NM_177710, intron 13 of 14)	-19050.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	4.20736166631465	3.83291840322681	4.0346849241457	4.15835113798664	3.84400562124346	4.2033761841845	3.81869887505776	3.88437720774555	-0.351187945680767	0.426682151407056	0.71810486026063
Merged-chr13-24613184-3	chr13	24613069	24613269	+	629.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286100, intron 1 of 22)	intron (NM_001286100, intron 1 of 22)	-1437.0	NM_001286101	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	3.68563757038722	3.49818089888278	3.63635330694044	3.98402767224159	3.35651501868665	3.401453226448	3.57012768187369	3.35183256624906	-1.0108980187486	0.0520428975286477	0.237535047551672
Merged-chr2-136948137-4	chr2	136948022	136948222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149746, intron 4 of 8)	intron (NR_149746, intron 4 of 8)	48771.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	6.53799442606452	6.37627338329355	6.93027136757609	6.95303244046484	6.21541840356925	6.73180992791854	6.59994619068161	6.17711989513708	-0.412063646360752	0.109376881860329	0.365234428313771
Merged-chr17-56133957-4	chr17	56133860	56134060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013662)	promoter-TSS (NM_013662)	-108.0	NM_013662	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	8.05978075066414	8.06670104910435	8.33371511691966	8.06483201065802	8.07531349725249	8.29682333419749	8.25157196842665	8.24585345790933	0.106663219736374	0.512602676856658	0.77591327696453
Merged-chr2-22795214-2	chr2	22795135	22795335	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	20908.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	4.35788227321266	4.68732264036487	4.53174403350266	4.5832417461638	4.60770300024996	4.57828982317142	4.69685664019401	4.10167509201515	-0.0677571407152553	0.860150924760042	0.947123023003096
Merged-chr19-11098560-4	chr19	11098453	11098653	+	780.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027058, intron 6 of 6)	intron (NM_027058, intron 6 of 6)	-17450.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	4.13244115740608	3.65296050447302	4.0887342328909	4.34538357035277	4.07680309450052	3.71979757903808	4.02530662865757	4.04033396321169	-0.298455714512622	0.525869892990087	0.783368069840974
Merged-chr7-24112601-1	chr7	24112501	24112701	+	760.0	f0_balb.idr	intron (NM_021307, intron 1 of 4)	intron (NM_021307, intron 1 of 4)	281.0	NM_021307	57745.0	Mm.82678	NM_021307	ENSMUSG00000052675	Zfp112	Znf112|Znf228	zinc finger protein 112	protein-coding	3.31495600780936	3.04430873940481	3.14566214395942	3.48178457578517	3.14259532938314	3.19304234181283	2.94229278995165	3.31354274540293	-0.430823195136885	0.46191481696252	0.743501704400988
Merged-chr4-75259558-3	chr4	75259469	75259669	+	903.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18723.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	3.70502812474941	3.80726239795521	3.60000014483767	3.75391555421249	3.48520653287867	3.47289440181341	3.63926025205918	3.80072259892037	-0.372695910831689	0.437224312469124	0.725557644444268
Merged-chr14-21501216-4	chr14	21501098	21501298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017479, intron 1 of 16)	CpG	1413.0	NM_017479	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	7.11923025122034	7.44775927655467	7.5380095640155	7.29636677256446	7.86990990398509	7.90886088278398	7.85425677522604	7.5418862119857	0.587562725426485	0.00178938939109971	0.0214350298668944
Merged-chr2-31061035-4	chr2	31060936	31061136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	35464.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	6.86981401304023	6.71373206343881	6.48332111802105	6.29115373163755	6.51609099763974	6.42070464715243	6.39886036501537	6.27854998394061	-0.270522673371314	0.254535981293493	0.565927925672817
Merged-chr6-120112067-1	chr6	120111967	120112167	+	944.0	f0_c57.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	18687.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	4.19207680483421	4.44596373748074	4.35794458902034	3.92088101467182	4.26133499994901	4.22729327118321	3.88111392743766	3.51524781302478	-0.59075364312711	0.234386378811438	0.544268585576646
Merged-chr7-115251764-4	chr7	115251665	115251865	+	927.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	300491.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	4.74792785476158	5.0968492265517	5.03679572082956	4.99410613439374	4.42313811281579	5.17622993659265	5.01200362686058	4.78529794393061	-0.221529717081301	0.539191177500532	0.791983989773924
Merged-chr15-9111089-4	chr15	9110952	9111152	+	896.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001285980)	TTS (NM_001285980)	29402.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	4.68331567664485	3.95516626767524	3.97134845250054	4.52515295164477	3.94570266859911	3.86261990575145	3.90164261586552	4.21007026145592	-0.87553787138552	0.0616420826145364	0.262700383093048
Merged-chr14-76110845-4	chr14	76110764	76110964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013745)	promoter-TSS (NM_013745)	-27.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	7.77230515406123	8.05887154758069	7.82142801852015	7.94854051596516	8.16008966990829	8.207410465653	7.95802463592555	8.14429183150023	0.272260995147854	0.100521304825169	0.34803998230133
Merged-chr8-70904704-4	chr8	70904598	70904798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1276.0	NM_173013	270058.0	Mm.248559	NM_173013	ENSMUSG00000019261	Map1s	6430517J16Rik|Bpy2ip1|Map8|Mtap1s|VCY2IP1	microtubule-associated protein 1S	protein-coding	7.38305116537082	7.15199515247309	7.2403720597465	7.48618348009002	7.20063200580907	7.20458974185961	7.26769594234586	7.23531537652286	-0.140845100976538	0.446514568223764	0.732177298348394
Merged-chr11-55449443-3	chr11	55449386	55449586	+	941.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 3 of 3)	intron (NM_009720, intron 3 of 3)	11722.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	4.07905315221245	3.62144110041579	3.99766520896598	3.86803112520651	3.71419822625589	3.66035805914924	3.5888585043581	3.41521096347051	-0.893870509601471	0.0687754505280733	0.280199633285887
Merged-chr13-40860084-3	chr13	40859978	40860178	+	802.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023887, exon 1 of 3)	5' UTR (NM_023887, exon 1 of 3)	310.0	NM_023887	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	3.28450881254307	3.40226085470741	3.54633619960432	3.27665631474089	3.2162448068915	3.27440560213464	3.32868985377883	3.09684742655103	-0.537069802669832	0.319952692262467	0.631766330519035
Merged-chr15-98389971-4	chr15	98389881	98390081	+	983.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8464.0	NR_015496	73302.0	Mm.272760	NR_015496	ENSMUSG00000099353	1700031M16Rik	4930413L20Rik	RIKEN cDNA 1700031M16 gene	ncRNA	5.2362768623508	5.24504441267489	5.71924349019945	5.57776429867804	5.34658671695014	5.38051861162378	5.44693389131805	5.09625296514553	-0.252482513247857	0.401199224628323	0.698869974053897
Merged-chr16-55848045-4	chr16	55847958	55848158	+	980.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134457, intron 5 of 5)	intron (NM_001134457, intron 5 of 5)	-9417.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	4.62830333275615	4.88471864366848	4.62904052896692	4.83236651702285	4.5770070166002	4.38749108683314	4.68513009815145	4.88055197582471	-0.240614226058635	0.499145775348619	0.768207716806231
Merged-chr1-64223357-3	chr1	64223263	64223463	+	604.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101974.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	3.53536319943193	3.55747152694008	3.69713782997172	3.75094342089537	3.50952431540677	3.76241899912152	3.82285812329261	3.53399291534652	0.0421910544722247	0.930254824706637	0.974833757843968
Merged-chr5-38307854-4	chr5	38307746	38307946	+	975.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11663.0	NM_013503	13492.0	Mm.167154	NM_013503	ENSMUSG00000039358	Drd5	D5R|Drd-5|Drd1b|Gpcr1	dopamine receptor D5	protein-coding	4.81415113414222	4.69686635470762	4.85027395827165	4.6247293112603	4.56437126278055	4.66838245105139	4.89409746925858	4.88132774166279	0.0301262137398185	0.929900443000066	0.974727857709636
Merged-chr15-64242678-4	chr15	64242586	64242786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	69987.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	7.85847826090263	7.96242571860753	8.06983825563467	8.1521069477018	8.0239253966672	8.27292566922189	8.12425257315583	7.86208842125642	0.0719071577830549	0.679049834933051	0.868303030642229
Merged-chr18-80684500-2	chr18	80684399	80684599	+	983.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 2 of 9)	intron (NM_198429, intron 2 of 9)	23674.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	3.2447888576378	3.21062362806486	3.53521563583632	3.77918905016177	3.65024648494818	3.41833674751636	3.57165457042818	3.53326095908485	0.223059003812124	0.686284270730745	0.871787672169905
Merged-chr17-28756596-4	chr17	28756498	28756698	+	907.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12719.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	4.52681760713663	4.65609205907306	4.35362036064893	4.68045839002351	4.09444862486217	4.61736622710308	4.76084099478406	4.39660426537138	-0.194604479552391	0.624230040774722	0.83935232045714
Merged-chr1-95593034-2	chr1	95592934	95593134	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009183, intron 4 of 4)	intron (NM_009183, intron 4 of 4)	74560.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	3.18343516532033	3.06988366557479	3.06815404545127	3.02532091671123	3.1909831227951	3.23717292974286	3.05738291834039	2.94026608963244	0.121670204397207	0.829373750740953	0.934525790786612
Merged-chr3-122090762-3	chr3	122090657	122090857	+	691.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007378, intron 11 of 49)	intron (NM_007378, intron 11 of 49)	46297.0	NM_007378	11304.0	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	3.39949429336215	3.67082533642857	3.73307738922416	3.7575400703191	3.36394519065947	3.63664603153639	3.66792365984036	3.77878383512225	-0.125765162924223	0.801127426859469	0.923337043240231
Merged-chr7-35595048-3	chr7	35594951	35595151	+	750.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152519, intron 2 of 28)	intron (NR_152519, intron 2 of 28)	8804.0	NR_152519	245886.0	Mm.272620	NM_145633	ENSMUSG00000034867	Ankrd27	AA408090|BC016493|D330003H11Rik|Varp	ankyrin repeat domain 27 (VPS9 domain)	protein-coding	3.06606186284649	3.16346994441139	3.11964407048978	3.21835428422962	2.46893491804947	2.64432957433966	2.61088962405274	2.69032520124456	-3.16083185888551	9.54355376990413e-05	0.00195369747997701
Merged-chr11-44529474-4	chr11	44529308	44529508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 2 of 5)	intron (NM_001166553, intron 2 of 5)	10031.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	6.10568615158925	5.957495849019	5.86963942502519	5.67081908908769	5.90248832680292	6.20003354248612	6.03578583544233	5.88894341499483	0.179089735387159	0.482177244138648	0.757084112248137
Merged-chr10-111074093-4	chr10	111074012	111074212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64046.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	5.9948556528544	5.61065029533556	5.99591582643133	5.98177558424238	5.68682901453838	5.78998551275278	5.83569543983204	5.71609028916608	-0.248536003286935	0.332094128875178	0.643114462430911
Merged-chr8-91051246-4	chr8	91051177	91051377	+	990.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001310530, exon 38 of 38)	exon (NM_001310530, exon 38 of 38)	-18780.0	NM_001282001	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	4.6591580855187	5.01696606471354	4.89369870854528	4.98749361400188	4.98388845813722	4.65797693740227	4.93900266697439	5.02525669795733	0.0167758051112533	0.959658413881799	0.985564815630123
Merged-chr2-79050841-3	chr2	79050738	79050938	+	949.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	181160.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	4.16847685224828	4.21093642039576	3.98255137078103	4.37253894213577	3.96446244560084	3.88415692012366	3.96615648499209	3.98025905432577	-0.676708773512839	0.110977111991678	0.3680570242501
Merged-chr7-43643319-4	chr7	43643218	43643418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028236, intron 4 of 5)	intron (NM_028236, intron 4 of 5)	8579.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	7.37849303640835	7.79757852515326	7.67451162137038	7.0248278531096	7.76459721507573	7.95410885470559	7.70849120833622	7.49339079626745	0.324118462150373	0.150398457671626	0.433033574599801
Merged-chr6-87804929-4	chr6	87804826	87805026	+	822.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	4831.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	4.28269199341201	4.22437089443101	4.32766771761424	4.15856111850918	4.29761299620615	4.10467806464097	4.57854632593082	4.56220986116367	0.376595468499825	0.335964363412947	0.646139081960825
Merged-chr15-55552299-3	chr15	55552209	55552409	+	900.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026759, intron 2 of 6)	intron (NM_026759, intron 2 of 6)	5003.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	3.95918005253368	3.48945370940552	3.77675557460967	3.52021157879984	3.92191661772473	3.49184437919093	3.89865769759908	3.43987946995875	0.065144958734377	0.899631602366788	0.962684393837149
Merged-chr19-37851723-3	chr19	37851624	37851824	+	678.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153916.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	2.90655500151003	2.69745465171298	2.90696282515086	3.07862858452855	2.47371862585977	2.46052567574649	2.65278795604323	2.78837340168353	-1.59732416172721	0.0267934767967056	0.155557331558948
Merged-chr6-136941358-4	chr6	136941271	136941471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301301, intron 1 of 5)	intron (NM_001301301, intron 1 of 5)	132.0	NM_001301305	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	4.89131242157632	5.13286398852096	5.4094926313857	5.13428634491879	5.23670747245227	5.2524138923924	5.08657663520388	5.35151933926219	0.152495602297937	0.617020430806003	0.835291303503194
Merged-chr15-100133690-3	chr15	100133591	100133791	+	950.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 3 of 37)	intron (NM_001159361, intron 3 of 37)	-20705.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	4.04418600075535	3.79620880218502	3.76155937608463	3.93000170873379	3.61294279157567	3.51456225700769	3.84677916971536	3.99929400812256	-0.391659474015838	0.406912190911137	0.703358576868399
Merged-chr4-86902624-4	chr4	86902512	86902712	+	979.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290543, intron 4 of 5)	intron (NM_001290543, intron 4 of 5)	28198.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	6.41885586510198	5.70916387292681	6.60268876706215	6.76375490867724	5.75888259245425	5.34821921599166	6.35377878721622	6.36522723938742	-0.622709520995045	0.0739555638721599	0.293002509231686
Merged-chr13-73774155-3	chr13	73774036	73774236	+	833.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 1 of 24)	intron (NM_001360694, intron 1 of 24)	10439.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	3.21782118079658	2.9504724249093	3.16434089667855	3.11133944837277	2.98662227075991	2.95941425948697	2.91310142232467	3.26775632604546	-0.305073708821899	0.60309256722451	0.82791756687509
Merged-chr2-122780612-4	chr2	122780508	122780708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027888, intron 1 of 9)	intron (NR_027888, intron 1 of 9)	-1391.0	NM_021507	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	6.22382579642543	5.89259806198533	6.42057794911172	6.56358405403189	6.04172591472529	6.17054611031859	6.23076897545815	6.20108904503007	-0.232736808265017	0.360511770129847	0.665893379854484
Merged-chr2-167689051-4	chr2	167688913	167689113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009883)	promoter-TSS (NM_009883)	98.0	NM_001287738	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	7.80861652991686	8.06839340579181	8.09500728910305	7.9551093205093	8.02075331707618	8.26624502182669	8.36967585767974	8.17577589155947	0.287343424661108	0.0898653122699273	0.327377625419426
Merged-chr2-124708317-9	chr2	124708211	124708411	+	926.037048	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54730.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	3.59263394145977	3.7644720238243	3.84343034576925	3.68277361521395	3.37817645886863	3.65296028824599	3.68388984789284	3.59116683076417	-0.467531668239506	0.333160977493038	0.64399149963087
Merged-chr18-61014711-3	chr18	61014621	61014821	+	788.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201353)	promoter-TSS (NM_201353)	-522.0	NM_201353	240332.0	Mm.39846	NM_201353	ENSMUSG00000052026	Slc6a7	AW455934|PROT	solute carrier family 6 (neurotransmitter transporter, L-proline), member 7	protein-coding	2.8516379766901	3.03356459226426	2.78228743829716	3.06490344628134	2.7341761805315	3.02707993631757	3.08654853909164	3.30365134130713	0.436539227176864	0.490833527078634	0.762545540982874
Merged-chr9-50603915-4	chr9	50603820	50604020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025848)	promoter-TSS (NM_025848)	19.0	NM_013897	30057.0	Mm.335149	NM_013897	ENSMUSG00000039016	Timm8b	Tim8b	translocase of inner mitochondrial membrane 8B	protein-coding	7.62491952976173	7.50595240594376	7.16055613881919	7.42167427480498	7.54039561052908	7.48484159081813	7.33341106807452	7.46249423806436	0.027329639941198	0.883262504629221	0.956033847067461
Merged-chr5-145115437-2	chr5	145115337	145115537	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	intron (NM_023142, intron 1 of 9)	1181.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	2.83153753681645	3.30443841873877	2.90263642103586	2.62182295044577	3.30215742019959	3.08144660176146	3.02307178413294	3.36196167106705	1.04961693812359	0.103188775700431	0.352873128956895
Merged-chr2-164074667-1	chr2	164074567	164074767	+	573.0	f0_balb.idr	intron (NM_021420, intron 1 of 10)	MIR|SINE|MIR	489.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	3.10099770994293	3.03727338032524	2.98634719488528	3.07792733256319	3.08466708298338	2.74737728646461	2.91515650209215	2.98488588656538	-0.453050571014473	0.452243061295931	0.736617734348328
Merged-chr9-61371380-4	chr9	61371270	61371470	+	993.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083927)	promoter-TSS (NM_001083927)	-996.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	4.65939273462722	4.82576606210777	5.508997674977	4.6542499319173	5.25913101012819	5.358502804506	4.92493612050848	5.40618805166851	0.56166002576076	0.128780492631071	0.399288525721436
Merged-chr10-29445284-4	chr10	29445186	29445386	+	882.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82844.0	NM_001110197	68031.0	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	3.90362567085058	3.75834908732184	4.08960071210991	4.18352235501472	4.12299677092154	3.68101052675472	3.83800575024765	3.99804779618829	-0.204950235873758	0.657205778254827	0.857123881679102
Merged-chr4-145241088-4	chr4	145240950	145241150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	5820.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	7.00172225409439	7.37754802984993	7.54135452909656	7.06835065642586	7.36261697696318	7.56989183964489	7.58030397701025	7.50963506854166	0.329565390758709	0.101648987046145	0.349885064507838
Merged-chr9-55544199-3	chr9	55544093	55544293	+	731.377747	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027397, exon 4 of 6)	exon (NM_027397, exon 4 of 6)	3044.0	NM_027397	104360.0	Mm.273996	NM_027397	ENSMUSG00000032318	Isl2	3110001N10Rik	insulin related protein 2 (islet 2)	protein-coding	3.66177320047376	3.37684169451986	3.80322821130047	3.41781515040949	3.36223230597407	3.37212384652091	3.31223003416558	3.88641048594709	-0.21341614332052	0.693689245607428	0.875509456408871
Merged-chr10-21669046-4	chr10	21668917	21669117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21828.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	5.69205575629904	5.61927054497429	5.89832017903739	5.61956774692263	5.47586581221886	5.59439418687604	5.61402507528693	5.6124911566411	-0.2242694382484	0.393884439357659	0.693084615297837
Merged-chr19-61266681-4	chr19	61266604	61266804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-38286.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	9.13098095737638	9.23798635288779	9.88504838639397	9.21776772132817	9.14823540089154	9.23504815177119	9.06895177321643	9.50882122061673	-0.189668591393436	0.355741735259191	0.662446132639545
Merged-chr4-101355574-3	chr4	101355479	101355679	+	848.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040640, intron 1 of 3)	intron (NR_040640, intron 1 of 3)	669.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	3.71083578988552	3.42362082521575	3.80720237204983	3.31977653805634	3.37221937348682	3.61287288423634	3.64523976063212	3.85002794507504	0.18229302382111	0.725357459340433	0.890882744907904
Merged-chr9-124080644-4	chr9	124080537	124080737	+	937.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEy-int|LTR|ERVK	-21546.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	4.57386667573932	4.63659812590594	4.35344392500648	3.32947805558396	4.91552063460407	5.03694015856332	4.55256438147776	4.76038353423648	1.07542301725813	0.0324306790546519	0.176279748333797
Merged-chr13-48872489-4	chr13	48872384	48872584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-1599.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	5.89596595719771	6.04991559829149	5.91963275626154	6.1131944518401	5.9170472509563	5.822613148085	5.7481385550808	5.77325698414411	-0.298877955126767	0.221443453184916	0.529467559096274
Merged-chr11-50109011-4	chr11	50108917	50109117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 7 of 7)	intron (NM_001290750, intron 7 of 7)	-22343.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	7.20530107215992	6.90242942022565	7.18466817127315	7.0331404186826	6.88727154030491	7.02217089994078	7.49238339172347	7.14609136458281	0.096287381934006	0.653628989673821	0.855122647012202
Merged-chr13-64422242-3	chr13	64422177	64422377	+	985.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-10276.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	3.4108266364153	3.23993995268175	3.52377271551834	3.66714170296475	3.1101403779527	3.74622762155942	3.33913897220444	3.76580199789466	0.132920388775292	0.815445208988468	0.928771536712768
Merged-chr7-92977637-4	chr7	92977558	92977758	+	783.983337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102221.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	4.07827161374982	3.73684296238047	4.21196922917603	4.43535423654457	4.03903950281971	3.94182476921562	3.91448186546254	4.1665332505499	-0.350171759058107	0.44243661468372	0.729114602217242
Merged-chr12-112145428-4	chr12	112145355	112145555	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001097621)	promoter-TSS (NM_001097621)	-753.0	NM_001097621	668303.0	Mm.313104	NM_001097621	ENSMUSG00000021294	Kif26a	mKIAA1236	kinesin family member 26A	protein-coding	3.81721008862703	4.22825563182807	3.76378070095221	4.22251838727629	3.59863354955932	3.93840230876087	3.63557785659841	3.96492917454395	-0.702479901375493	0.14375567064557	0.422232602165596
Merged-chr8-116633998-4	chr8	116633907	116634107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	MTD|LTR|ERVL-MaLR	98984.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	6.18168897378054	5.9613114310129	5.92248811372641	6.03653954797156	6.4463970740168	5.97529934683954	6.64374677550084	6.07639190820598	0.44747149805077	0.0816008909946976	0.309972772980659
Merged-chr2-72979124-5	chr2	72978971	72979171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045269)	promoter-TSS (NR_045269)	210.0	NM_001098425	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	6.49960831433078	6.60935958659422	6.98515499176695	6.52572753990751	7.13778595021041	6.97849221445437	7.07655089547351	6.75404810667559	0.476623010394509	0.0295283641890327	0.165482988316759
Merged-chr5-90896322-1	chr5	90896222	90896422	+	756.0	f0_balb.idr	Intergenic	Lx3C|LINE|L1	5077.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	3.21567528028485	3.46222820908654	3.46569931703837	2.73755071737599	2.8610501337082	2.87020997764547	2.89729926207009	2.97301489588351	-1.45717512161779	0.029728145308842	0.166261452027722
Merged-chr5-136954531-4	chr5	136954368	136954568	+	951.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347504, intron 1 of 3)	intron (NM_001347504, intron 1 of 3)	1193.0	NM_001347504	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	3.63867186443653	3.83974081310659	3.90811289740586	3.92438877752836	4.14449289395667	3.75676585079022	3.73889914177677	4.08623548002069	0.318833511826493	0.486423330993963	0.760145918082447
Merged-chr17-47394408-4	chr17	47394312	47394512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008189)	TTS (NM_008189)	6194.0	NM_008189	14913.0	Mm.16224	NM_008189	ENSMUSG00000023982	Guca1a	GC-A|Gcap1|Guca1|mGCAP1	guanylate cyclase activator 1a (retina)	protein-coding	5.55981571031641	5.57721188085719	5.44572098199546	5.67590900707425	5.57995920278851	5.59249804699971	6.07756138118762	5.58406128956037	0.248180098688705	0.373550107739371	0.677113210162732
Merged-chr12-80642927-3	chr12	80642833	80643033	+	953.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347409, intron 1 of 4)	intron (NM_001347409, intron 1 of 4)	1178.0	NM_007951	13877.0	Mm.246551	NM_007951	ENSMUSG00000021131	Erh	Mer|Prei1	ERH mRNA splicing and mitosis factor	protein-coding	4.28056490543243	4.34112810015872	4.28123588585634	4.4006541600696	4.14966579816603	4.01395560818307	3.87736182451974	4.04967916371452	-0.767040465908012	0.0601562361421544	0.258910432480494
Merged-chr15-100665139-4	chr15	100665036	100665236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270537, intron 1 of 10)	intron (NM_001270537, intron 1 of 10)	4364.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	5.86524701105331	5.83381384513501	5.28267718971637	5.2258688359975	6.08438668681125	6.22520872202619	5.56532754764799	5.64375619612548	0.550986099130486	0.0848173617421106	0.316930809566995
Merged-chr6-134310454-3	chr6	134310343	134310543	+	997.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153848, intron 8 of 8)	L1_Mus2|LINE|L1	-85886.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	5.20085240612733	5.24500506786584	5.59650875289244	4.80264860726679	4.31240256145754	4.36047727371067	4.26387528734421	4.27964753213715	-1.99542889739978	5.67787470027601e-07	2.08215066095284e-05
Merged-chr7-81861299-4	chr7	81861211	81861411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111910, intron 1 of 7)	intron (NR_111910, intron 1 of 7)	-1376.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	6.4201658239965	5.85197316118608	5.70906679194247	6.15490611798218	5.75789615981404	5.91445102243973	5.75908847326419	6.43209487691383	-0.112475352249828	0.70590604731448	0.881859110549825
Merged-chr6-65516877-4	chr6	65516772	65516972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73526.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	5.20454485705006	5.94349717951316	5.76865315489223	5.2805217378725	6.27459318673376	5.89520893192975	5.85299983842739	5.40716649329075	0.525420369404639	0.11259099236143	0.371040985475911
Merged-chr7-96546876-3	chr7	96546806	96547006	+	986.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310762, intron 4 of 32)	intron (NM_001310762, intron 4 of 32)	-204942.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	5.08405541471584	4.64762668318555	4.65815216731659	5.52193315262854	4.09441530416928	4.14991442405581	4.33245485426458	4.29900374278135	-1.84927053084225	1.40344886652238e-05	0.000374002571584411
Merged-chr4-43030885-2	chr4	43030785	43030985	+	904.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023231, intron 2 of 9)	intron (NM_023231, intron 2 of 9)	499.0	NM_023231	66592.0	Mm.331565	NM_023231	ENSMUSG00000028455	Stoml2	0610038F01Rik|MSLP2|SLP-2	stomatin (Epb7.2)-like 2	protein-coding	3.55483950611595	3.0883362711033	3.19918632766306	3.03642871984779	3.13618290722902	3.12026619866685	3.12787647066447	3.25483926038868	-0.253368009824537	0.659373835979835	0.858262365203983
Merged-chr2-19145569-4	chr2	19145451	19145651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53567.0	NM_001271563	70882.0	Mm.276696	NM_001081083	ENSMUSG00000037683	Armc3	4921513G22Rik	armadillo repeat containing 3	protein-coding	5.31023724915668	5.77654166845997	5.43759078574854	5.59682601687142	5.72663647050102	5.45657989916235	5.95907066511503	5.67928709471523	0.285105744595385	0.311678498959522	0.623665218229603
Merged-chr13-43864655-4	chr13	43864563	43864763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	79551.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	8.2292691564089	8.58087584411405	8.28870171688377	8.41857449673166	8.32220334992092	8.51107058090859	8.32135952836858	8.08040680154912	-0.0921818510741848	0.592447086368294	0.822184390287336
Merged-chr5-149221614-4	chr5	149221519	149221719	+	972.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37059.0	NM_001359957	231915.0	Mm.29402	NM_001013378	ENSMUSG00000041264	Uspl1	E430026A01Rik	ubiquitin specific peptidase like 1	protein-coding	4.88445904858862	4.99126241096332	5.26428757642361	5.48393449464405	5.81737636794489	5.26989382717216	6.16651784885593	5.67810306980621	0.994570169590057	0.00352253357531461	0.0362431941829024
Merged-chr16-91862353-3	chr16	91862242	91862442	+	599.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 25 of 28)	intron (NM_001110275, intron 25 of 28)	69288.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	3.34985754084945	3.37915631571219	3.22776842213258	3.538976440799	3.01642534926147	3.52289567988134	3.39417749727029	3.70331185828261	0.150284180955957	0.79174825481785	0.919290448094425
Merged-chr11-68899264-4	chr11	68899160	68899360	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2306.0	NM_009080	19941.0	Mm.3229	NM_009080	ENSMUSG00000060938	Rpl26	SIG-20	ribosomal protein L26	protein-coding	4.77957641974709	4.77044939789617	4.78034742436385	5.24347475381242	4.79331313579889	4.87605006689301	4.90345692486733	4.99123383938536	-0.0921586266395895	0.790441893396033	0.918840742585233
Merged-chr11-95425064-2	chr11	95424964	95425164	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359107, intron 1 of 9)	PB1D7|SINE|Alu	10981.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	2.70131864697178	2.71269999768812	2.76088502994122	2.63060210675804	2.55538512779303	2.60728248696342	2.5661612308807	2.57283629745551	-0.650596304272781	0.323937705539934	0.635439617004547
Merged-chr9-114815544-4	chr9	114815460	114815660	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 1 of 3)	intron (NM_027294, intron 1 of 3)	28592.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	4.62967892883356	4.74333924763382	4.41802776733426	4.75630743488728	4.66044604746482	4.54831472683528	4.88589720653069	4.31977461055728	-0.0656274925936807	0.859356792968265	0.946751127151883
Merged-chr7-90029396-8	chr7	90029407	90029607	+	984.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	348.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	4.98809510852357	5.11391178932381	4.80733848667998	4.67059260504611	4.90735221958148	5.16145218153113	4.82284220642353	5.08310170254138	0.202024282836124	0.544490708561961	0.795278438526908
Merged-chr19-46014732-4	chr19	46014638	46014838	+	993.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11260.0	NM_176785	20170.0	Mm.101110	NM_176785	ENSMUSG00000074811	Hps6	5330434M19Rik|BLOC2|ru	HPS6, biogenesis of lysosomal organelles complex 2 subunit 3	protein-coding	4.98654759373519	4.85395640745829	4.76687293240676	4.85104833033386	5.19518919483115	4.77528556628413	5.12018331820615	4.98400480394977	0.342013299788943	0.287064667130879	0.59875252848275
Merged-chr10-117874158-4	chr10	117874073	117874273	+	921.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-28199.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	4.30501601762287	3.87658331003067	4.34608173713892	4.193171779892	3.83719736994576	3.93409631800535	4.3256720923707	4.34322765550283	-0.164213658087848	0.71139403127371	0.884405406929924
Merged-chr9-88709688-2	chr9	88709587	88709787	+	963.0	f0_balb.idr|f0_c57.idr	intron (NM_001359992, intron 2 of 2)	intron (NM_001359992, intron 2 of 2)	9900.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	5.24911044064904	5.23444716285234	5.12521082829765	5.18335263697483	5.59560088080515	4.88407007894379	4.88849989636202	5.01946932657256	-0.080030554700417	0.814423661084201	0.928364456741546
Merged-chr10-117435126-4	chr10	117435035	117435235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12300.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	5.14550402105811	4.99572330203218	4.94357888722071	5.45477311706356	4.72931792743584	5.1888228480718	4.95578606817198	5.07884032675748	-0.347297094813079	0.304917687331841	0.617425354648188
Merged-chr16-37869388-4	chr16	37869277	37869477	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177093, intron 1 of 3)	intron (NM_177093, intron 1 of 3)	977.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	4.40792212738333	4.67816327126614	4.58122065739852	4.74842467622774	4.55511627783278	4.44186297421344	4.51952665410011	4.89721799090814	-0.0153460367932594	0.966600398028116	0.988217650432256
Merged-chr17-35774084-2	chr17	35773984	35774184	+	633.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_045459, intron 1 of 2)	intron (NR_045459, intron 1 of 2)	1634.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	2.66456490125194	3.05781783387484	2.73553217596068	2.57435519625131	2.77951197862938	2.91162086615363	2.85625155932096	3.14424574252071	0.716615019155782	0.27041171660519	0.582291198797182
Merged-chr3-21936096-4	chr3	21935983	21936183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140569.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	7.21802469667634	7.31722997296428	7.51642379416921	7.24923001800192	7.4864693954175	7.35095948847378	7.1831656206104	7.20300190148675	-0.0104685881216153	0.955773052436631	0.984292813605202
Merged-chr12-102440318-3	chr12	102440222	102440422	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011175)	promoter-TSS (NM_011175)	-509.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.26213156182108	5.83500290216142	6.24441636148926	6.52003980355857	5.98972780068203	6.23782491430395	6.23114734229897	6.43277553563288	-0.039141895566114	0.881462120684843	0.955384724180766
Merged-chr1-153754165-5	chr1	153754160	153754360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011882, exon 4 of 9)	exon (NM_011882, exon 4 of 9)	4834.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	4.46631941943424	4.47998439701408	4.91047847255055	4.24183045113742	4.2771061491544	4.1018271819415	4.40516616112788	4.37969244441898	-0.557139887892003	0.174954102841892	0.469607741390112
Merged-chr2-75778323-4	chr2	75778259	75778459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-53818.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	5.6492675812563	5.63114916626381	6.12633988064864	5.89652043211888	5.73141585538836	5.36139389059037	5.62173801798001	5.74729089138168	-0.349847179714396	0.208204757955948	0.512419186671064
Merged-chr11-60210519-4	chr11	60210422	60210622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358314)	promoter-TSS (NM_001358314)	-51.0	NM_001358314	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	7.5814934149405	7.71996761739494	7.17096780173434	7.45382063549078	7.33667018286929	7.12069084232676	7.16922064247191	6.89507626162388	-0.473258574093104	0.0230348688467303	0.140523782378677
Merged-chr7-4410089-4	chr7	4410001	4410201	+	960.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR15|LTR|ERVK	-12357.0	NM_001163014	243816.0	Mm.248662	NM_001163014	ENSMUSG00000078810	Gp6	9830166G18Rik|Gm469|Gpvi	glycoprotein 6 (platelet)	protein-coding	4.47866324693942	4.32303322183407	4.26636315687967	4.36340817464966	4.59503031232586	4.24455667298176	4.41918415249167	4.21665116875182	0.0711353126645765	0.853208055192225	0.944721799522858
Merged-chr10-23858259-2	chr10	23858142	23858342	+	788.0	f0_c57.idr|f1_balb.idr	intron (NM_011979, intron 3 of 6)	MMETn-int|LTR|ERVK	6780.0	NM_011979	26464.0	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	2.42164222968397	2.36882894409774	2.42183715398833	2.10422489411558	3.31190824049341	3.1129478858995	3.28848924546208	3.04948297752806	6.62964470715595	6.56236787349406e-12	6.11391077051614e-10
Merged-chr2-157424167-4	chr2	157424059	157424259	+	899.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009271)	promoter-TSS (NM_009271)	-134.0	NM_009271	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	4.3039179434337	4.12447989637399	4.30459443089501	4.11574006184776	4.34326709195529	4.29740916387594	4.28502892758454	3.91244349909472	0.046362257289579	0.909233012801039	0.96624757936316
Merged-chr4-105485379-4	chr4	105485277	105485477	+	910.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	328030.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.45873495664054	4.35424044031052	4.70341548700781	4.97202805659336	4.63884400609026	4.22976941195191	4.97364927356198	4.58424802474186	-0.0514538997255767	0.900028648853133	0.962949822613742
Merged-chr2-180042514-4	chr2	180042408	180042608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011969)	promoter-TSS (NM_011969)	25.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	7.45481445729154	7.74974476145193	7.56867199068131	7.61907749446931	7.66955341265507	7.88970435032908	7.7900353255511	7.51774580830435	0.152942657309293	0.392172157435868	0.691774675781771
Merged-chr13-55125098-4	chr13	55125008	55125208	+	990.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012017, intron 5 of 6)	intron (NM_012017, intron 5 of 6)	19799.0	NM_012017	26919.0	Mm.22795	NM_012017	ENSMUSG00000021481	Zfp346	Jaz|Znf346	zinc finger protein 346	protein-coding	4.99074445887135	5.12843310685697	5.34998392524256	5.06453844738764	5.4429726062801	4.97087636821919	5.29468859769303	5.62463455141514	0.413400132651207	0.186488406286813	0.484507729718182
Merged-chr13-29984417-4	chr13	29984301	29984501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289920)	promoter-TSS (NM_001289920)	-10.0	NM_001359994	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	7.90297370634538	8.17500781034617	7.93366342985846	8.21766363944158	8.20813563311641	8.18181097094452	8.19646532308517	8.00571730233097	0.100250553409436	0.551797160439303	0.799079794981062
Merged-chr12-84172454-4	chr12	84172345	84172545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 2 of 12)	intron (NM_001163501, intron 2 of 12)	21570.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	5.87404591077667	6.17485146032837	5.66985515653336	5.96658241962508	6.11173510631351	6.18436909231797	5.79723469767452	5.96221420344462	0.131472176558366	0.608656783768168	0.830732271148022
Merged-chr11-120629579-4	chr11	120629477	120629677	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010756, exon 3 of 3)	exon (NM_010756, exon 3 of 3)	3970.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	4.91679041607457	5.32243930738244	5.06806667972978	5.0701536565719	5.31621367116511	5.27921012480745	5.69039584185817	5.26163058867685	0.536237206943518	0.0795634822539225	0.30546111668565
Merged-chr10-125764586-4	chr10	125764484	125764684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41B|LTR|ERVL	-201635.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	6.06717100717221	6.24094181031907	5.99837859019347	6.3722748067044	6.25837078571717	6.7273800896133	6.87695383127864	6.38277249235535	0.572569459068814	0.0244744977699486	0.146270362759296
Merged-chr9-100391850-4	chr9	100391731	100391931	+	889.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	94642.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	3.86549093830931	3.91689742480714	4.41948298033747	3.87613861110979	4.30338557666481	4.15281970407173	4.19791993205903	4.3786035034487	0.594277546755777	0.163619251595066	0.453373353678186
Merged-chr2-22774379-4	chr2	22774300	22774500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019456)	promoter-TSS (NM_019456)	73.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	5.73689596782846	6.0600620065734	5.86154965628783	6.07477487157663	5.91634748740198	5.88778659298357	6.0667870887665	5.85739948301417	-0.0325396204889617	0.895667842574732	0.960927596150831
Merged-chr10-17727089-5	chr10	17727036	17727236	+	885.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	3908.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	3.34354305477516	3.25881830275694	3.12097981410108	3.00292036323497	3.08684369220558	3.40423803766747	3.04863823702372	3.05730223100784	-0.100467423700791	0.86107703982365	0.947524195989914
Merged-chr8-123374335-4	chr8	123374230	123374430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359076, intron 1 of 16)	CpG	619.0	NM_001286363	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	6.80540031986195	6.53446075999548	6.53169954084957	6.20514164168969	6.60054543441588	6.47871415056575	6.230010850494	6.55896545631153	-0.0615409607057411	0.798337933441926	0.921988151874205
Merged-chr15-96562781-4	chr15	96562671	96562871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	79191.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	6.08640005662516	6.14223099379043	5.98354017031642	6.15048426303237	6.13402657208579	5.46320980285887	5.84039183282098	5.84215708935441	-0.376002319849402	0.154168244118929	0.439364623310231
Merged-chr5-3341533-8	chr5	3341305	3341505	+	941.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2488.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	4.50676406414791	4.77481637558245	5.19939693254369	4.21167600479407	4.50058391559573	4.80692360769174	4.44279932806346	4.54759479826201	-0.292106413711738	0.486356754341551	0.760100660715873
Merged-chr12-69500766-4	chr12	69500669	69500869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-25219.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	5.85010862286274	5.51096981457703	5.73526293682396	5.75211651461078	5.50512072081645	5.67192854719533	5.63167310516734	5.80193197319785	-0.112938961996837	0.66841259789431	0.862948051435654
Merged-chr10-81434132-4	chr10	81434007	81434207	+	895.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-6934.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	4.06318009102573	4.16267022953149	4.464677947597	4.59237298002261	4.08207047375741	4.13459027161301	4.2387608613889	4.46173846230771	-0.289470176903616	0.491716479576243	0.763173225611247
Merged-chr10-16621026-4	chr10	16620922	16621122	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	474760.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	4.96912448837587	4.88459448694945	5.07668183525539	5.4331880607825	5.29142985437077	5.14526133258764	5.50281959575194	5.17225473022475	0.288421418125408	0.379465167108036	0.6820084441689
Merged-chr1-43915362-4	chr1	43915276	43915476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18618.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	6.48720815774043	6.69235170951001	6.88409941467795	6.31913958224657	6.42945171847587	6.34643015034997	6.36954119052043	6.16385832044088	-0.391359850979686	0.100783767992548	0.348474099968014
Merged-chr2-132846632-4	chr2	132846539	132846739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024385)	promoter-TSS (NM_001024385)	-27.0	NM_001024385	66586.0	Mm.357342	NM_025646	ENSMUSG00000027357	Crls1	0610009I22Rik|4930557M15Rik|5730490M08Rik	cardiolipin synthase 1	protein-coding	6.65439220643164	6.86983489560929	6.43330605067097	6.63804813834134	6.95244374288072	6.99332580319515	6.74065684324901	6.95537328915331	0.358898895238049	0.0836213406088454	0.314409349912683
Merged-chr12-4840999-3	chr12	4840930	4841130	+	900.5238039999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016863, intron 1 of 3)	intron (NM_016863, intron 1 of 3)	565.0	NM_016863	14226.0	Mm.20453	NM_016863	ENSMUSG00000020635	Fkbp1b	12.6kDa|AW494148|FKBP12.6|calstabin2	FK506 binding protein 1b	protein-coding	3.65057346629173	3.50738227602094	3.43743275920674	3.27024374707192	3.5361243936476	3.55267830347128	3.48065887689195	3.64892584105317	0.313149194314041	0.529993532991954	0.786105350910298
Merged-chr11-48998056-2	chr11	48997956	48998156	+	607.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-5810.0	NM_011579	21822.0	Mm.15793	NM_011579	ENSMUSG00000078922	Tgtp1	Gtp2|Irgb6|Mg21|Tgtp	T cell specific GTPase 1	protein-coding	3.57138296838712	3.65497107750102	3.39874288986603	3.22399236081275	3.37304287018355	3.57629414321056	3.55726631690551	3.98108869574906	0.555801759063712	0.292454067612249	0.60479380959004
Merged-chr11-98795823-4	chr11	98795719	98795919	+	964.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001361932, exon 1 of 3)	5' UTR (NM_001361932, exon 1 of 3)	303.0	NM_028722	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	4.57653658561578	4.85000710500644	4.40781631323929	4.02710861831748	4.45216923519902	4.71051633940782	4.43205886874015	4.75843523016326	0.229499203332816	0.578623204957896	0.814850274099854
Merged-chr17-84181738-4	chr17	84181652	84181852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	6195.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	6.23112782418699	6.30679977703632	6.4088316801608	6.10929031566667	6.13870129485857	6.30939539711597	5.83030495907746	6.14957699442561	-0.217083230237289	0.366668995142553	0.67106686221464
Merged-chr9-59751050-7	chr9	59750930	59751130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172071)	promoter-TSS (NM_001172071)	-144.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	7.15183339339035	7.6215717367444	7.62457379723727	7.01030556972423	7.16321998946979	7.69032623912279	7.18650515204159	7.51711694553982	0.0390770959517393	0.867835131339925	0.95047283198973
Merged-chr3-54692713-4	chr3	54692610	54692810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019995)	promoter-TSS (NM_019995)	-105.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	8.29682404989188	8.21751029234519	8.21780516082415	8.47132466820046	8.28298458988211	8.26431421350345	8.43965059173031	7.88179102725195	-0.0964021059445964	0.59240620568255	0.822184390287336
Merged-chr13-113983937-3	chr13	113983823	113984023	+	788.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 4 of 4)	intron (NM_172595, intron 4 of 4)	167669.0	NR_045836	319803.0	Mm.386896	NM_177004	ENSMUSG00000114213	A430090L17Rik	-	RIKEN cDNA A430090L17 gene	ncRNA	3.62799090971318	3.5587497106145	3.62844603501663	4.36737925551278	3.99107361343289	3.91900506407825	4.22161795454051	3.62660522840668	0.261021207469081	0.634643394669825	0.845322747017014
Merged-chr17-25140469-4	chr17	25140338	25140538	+	978.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317404, intron 1 of 24)	intron (NM_001317404, intron 1 of 24)	3807.0	NM_001317404	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	4.97734992307049	5.640333031472	5.19345002509353	4.60410726157312	5.63099880405913	5.73625180248941	5.16772448081223	5.37413008718997	0.615078395658321	0.0927690650037241	0.333259779847587
Merged-chr2-70503617-3	chr2	70503521	70503721	+	866.138855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040496, intron 1 of 2)	intron (NR_040496, intron 1 of 2)	-5198.0	NM_025744	66748.0	Mm.423014	NM_025744	ENSMUSG00000075302	Erich2	4933404M02Rik	glutamate rich 2	protein-coding	4.04487672323976	3.79601174879799	4.24776412163175	3.97564250721731	3.65035432606451	3.8703322270825	3.67979803062414	3.74816026278089	-0.827508536529112	0.0713839176704666	0.286751477331737
Merged-chr7-128400824-4	chr7	128400732	128400932	+	774.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 3 of 4)	intron (NM_026418, intron 3 of 4)	17340.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	3.34417540664684	3.12461611588151	3.40390431615217	3.44599995907781	3.72815432990281	3.45831273531571	3.69508942980891	3.51302602259054	0.879287607033088	0.0880059063556576	0.32365269415091
Merged-chr18-55203485-3	chr18	55203393	55203593	+	669.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-210902.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.55919581164517	3.49567275070144	3.35414560744857	3.32150728684275	3.08790667817087	3.28675493008976	3.09985694987349	3.35231286708144	-0.835871674559657	0.126784023296276	0.395978937876509
Merged-chr4-62664106-6	chr4	62664042	62664242	+	892.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-9832.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	4.37411868065136	4.29447874395584	4.49168910240367	4.21294916582526	3.93070361837026	4.2784675037251	4.18175533338848	4.28771430157436	-0.425111942033932	0.293034724543031	0.60553679205796
Merged-chr8-106168844-4	chr8	106168789	106168989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357382)	promoter-TSS (NM_001357382)	-32.0	NM_001357381	330836.0	Mm.46749	NM_178798	ENSMUSG00000031904	Slc7a6	AI643885|LAT-2|LAT3|y+LAT-2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 6	protein-coding	6.00821679013069	6.1647558405287	6.28932334495398	5.78097403447843	6.35987739362465	6.2718046294435	5.78676507256993	6.45222865408321	0.281794905104558	0.29333837858886	0.605923922620403
Merged-chr5-74704569-4	chr5	74704455	74704655	+	972.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1652.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	6.19512618797272	6.49830618659627	6.19624461008337	6.52788325958782	5.05943322856517	5.17985894490902	5.56380276058795	5.07132700157347	-1.90056185905014	1.84367986130246e-11	1.5964876988765e-09
Merged-chr13-67128591-4	chr13	67128482	67128682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172392, intron 1 of 3)	intron (NM_172392, intron 1 of 3)	354.0	NM_172392	268670.0	Mm.56274	NM_172392	ENSMUSG00000057396	Zfp759	BC028265|Rslcan-8|Rslcan8	zinc finger protein 759	protein-coding	5.55578039275115	5.69866913355453	6.36220969199582	5.66236575498706	5.32956121734932	5.52251931995905	5.75869672648308	5.66087921297982	-0.466959592661331	0.13263924534491	0.405633892348243
Merged-chr17-69075700-4	chr17	69075593	69075793	+	924.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355732)	promoter-TSS (NM_001355732)	16.0	NM_001355732	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	4.49672325041106	4.46375299509717	4.97607983999493	4.86134057215508	4.46421185476349	4.62934943194605	4.85681478162275	4.70029510853167	-0.129498122554562	0.726562675345849	0.891138160891292
Merged-chr5-3802979-6	chr5	3802910	3803110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033173)	promoter-TSS (NR_033173)	114.0	NM_001289528	70797.0	Mm.130148	NM_001003909	ENSMUSG00000040351	Ankib1	2310061P20Rik|4631416I11Rik|AW494740|C80642|mKIAA1386	ankyrin repeat and IBR domain containing 1	protein-coding	6.24665585806399	5.68452088703773	6.33450377677097	6.15272571548027	5.71713064869128	5.69516049284991	6.14203707748682	6.24327702970026	-0.244125718061967	0.388430508537669	0.688981838974675
Merged-chr1-59899821-3	chr1	59899716	59899916	+	872.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13190.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	3.83778813322226	3.40576939805512	3.52087000468404	4.02798760355601	3.95388103621779	3.50943875510853	3.72560418022144	3.68731455963726	0.00086004399491993	0.998692713958323	0.999449015879545
Merged-chr15-79357713-4	chr15	79357606	79357806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001304830, exon 3 of 3)	exon (NM_001304830, exon 3 of 3)	9304.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	6.42432614566557	6.84625206551098	6.08605505188629	6.18593793325695	7.60708848981046	7.86996604289475	7.48258380286067	7.70182742153757	1.72244431736722	1.78761902975749e-13	2.2167410264653e-11
Merged-chr11-116828064-4	chr11	116827969	116828169	+	953.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026280)	promoter-TSS (NM_026280)	-23.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	5.39908902733696	4.94664776379546	4.96306512586246	4.79049147978107	4.8610818118162	4.82868052637569	4.71299341307171	5.18249029019688	-0.245560358440695	0.483454351283241	0.757810293808838
Merged-chr17-55958431-4	chr17	55958295	55958495	+	782.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028381)	promoter-TSS (NM_028381)	-792.0	NM_028381	72886.0	Mm.22796	NM_028381	ENSMUSG00000003208	Ccdc94	2900016D05Rik|AI413813	coiled-coil domain containing 94	protein-coding	3.34331097131044	3.36269988512162	3.60370758568832	2.69211857546379	3.4274704839587	3.5728539629642	3.1479495963178	3.28316337663949	0.242644903220284	0.705302083838218	0.881662591339926
Merged-chr17-34142652-3	chr17	34142547	34142747	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2769.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	4.45287122657348	3.793203186821	3.87265525811714	3.72133270186607	5.5660220717197	5.52609143340015	5.22604115107556	4.82356203227867	2.92050149750207	2.1960661925905e-12	2.21210611535543e-10
Merged-chr3-90255097-4	chr3	90255036	90255236	+	948.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357152, intron 1 of 9)	intron (NM_001357152, intron 1 of 9)	1278.0	NM_001357152	74343.0	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2	CREB regulated transcription coactivator 2	protein-coding	4.01603111053106	4.94323097252033	4.18480988741524	4.05741023703491	4.82752510509989	4.68488517852007	4.40543977009405	4.7337199539279	0.691234037850435	0.121143483351194	0.385390724845415
Merged-chr5-65294414-4	chr5	65294306	65294506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011258, intron 8 of 24)	intron (NM_011258, intron 8 of 24)	41233.0	NM_011258	19687.0	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	5.44413307467719	5.40040282080778	5.80880595296205	5.78056894829811	5.45956361167703	5.65108866407996	5.82322705124322	5.71107566309578	0.0493444054377554	0.860273996842239	0.947128143348069
Merged-chr7-3646053-5	chr7	3645917	3646117	+	907.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146176, intron 1 of 17)	intron (NM_146176, intron 1 of 17)	748.0	NM_146176	232791.0	Mm.358731	NM_146176	ENSMUSG00000035632	Cnot3	A930039N10Rik	CCR4-NOT transcription complex, subunit 3	protein-coding	2.91742903023161	2.83116089364934	3.17215834831814	2.64592935148993	3.15127052386528	3.16488187994669	3.15923393001048	3.56504377588618	1.52732472317593	0.0129323784918394	0.0946918188505772
Merged-chr15-88505964-3	chr15	88505841	88506041	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94361.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	3.29760830547668	3.33485054744075	3.29800554363018	2.49808925965329	5.19124701829174	4.81593699232647	4.71035478041854	4.85415721720199	7.30780795232605	1.00265831276319e-20	3.79618170447719e-18
Merged-chr3-107106208-4	chr3	107106099	107106299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008417, exon 3 of 3)	3' UTR (NM_008417, exon 3 of 3)	4632.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	5.60104514702375	5.15494645661145	6.037622885193	6.1495867591949	5.68898121069827	5.12097433034196	5.37822077669435	5.24004713055958	-0.706539742146471	0.0433265537177169	0.211726618311997
Merged-chr12-80111335-8	chr12	80111295	80111495	+	786.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007564, intron 1 of 1)	intron (NM_007564, intron 1 of 1)	1618.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	3.52711241328914	3.74207574404291	3.68633130045347	3.17051739071603	3.50935411133369	3.7548784971713	3.33556561458853	3.73285312390109	0.159277562994822	0.766445361025198	0.908641145110136
Merged-chr11-80155827-4	chr11	80155745	80155945	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 2 of 10)	intron (NM_172133, intron 2 of 10)	1683.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	5.00747748582989	5.23132685344346	5.1786923202363	5.22848849275098	5.17920500709509	5.47206198251091	5.02000961870783	5.20661088672611	0.0991094762029699	0.742939841390393	0.898691548174051
Merged-chr2-120159081-4	chr2	120158988	120159188	+	965.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4513.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	4.79580368282353	4.70936570207058	4.51755139981221	4.59937644238299	4.65113177517613	4.81825422934878	4.80864674354085	4.82865762735932	0.249503350109792	0.459711286180822	0.742175817983278
Merged-chr15-50697300-3	chr15	50697235	50697435	+	957.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	191714.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	3.73171342227636	4.00555814344629	3.7322137004725	4.01560115103038	3.69582798444311	4.05646304624856	3.82174263781317	3.73019035137536	-0.177585293149126	0.699749952976109	0.878897269268221
Merged-chr3-138521456-4	chr3	138521355	138521555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4736.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	5.49013488966403	5.41566791878398	5.70672439209103	5.6637811367676	5.65513145018582	5.95234722956283	5.67779621131409	5.82076323035614	0.324196211039823	0.220839799303226	0.528897510959013
Merged-chr8-72317258-4	chr8	72317157	72317357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1805.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	6.04987009302833	5.97492419533818	6.44810949738707	6.04405034993643	5.72826509340977	5.87921445370849	5.50219392406093	5.67046108129698	-0.696855322122732	0.0082225645652325	0.0684130827806761
Merged-chr2-112433563-4	chr2	112433463	112433663	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21462.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	5.21658771537205	5.11987504172846	5.42268288124254	5.47785143520609	5.19806592897571	5.39156674859546	5.09351185932911	5.24529305571824	-0.17419257887258	0.55926005313261	0.803673813331301
Merged-chr7-126475315-8	chr7	126475213	126475413	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289541)	promoter-TSS (NM_001289541)	-183.0	NM_011363	20399.0	Mm.8538	NM_011363	ENSMUSG00000030733	Sh2b1	AI425885|C530001K22Rik|Irip|Psm|SH2-B|SH2-Bb|Sh2bpsm1|mKIAA1299	SH2B adaptor protein 1	protein-coding	4.17894613492994	4.08232654281563	4.26444182033174	3.77855499537864	4.04753923754591	4.16514999855229	4.24465027201146	3.88295638511215	0.0454988947270793	0.917155142871528	0.969459238985449
Merged-chr7-98793262-1	chr7	98793162	98793362	+	975.0	f0_balb.idr	Intergenic	Intergenic	-41850.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	3.31035071551339	3.31954157513453	3.41339644614354	3.56590836127423	2.92208115414573	2.97771606581477	2.93431997437073	3.07563850470435	-1.83002668559155	0.00238810750515841	0.0267647778475312
Merged-chr4-19567071-1	chr4	19566971	19567171	+	646.666687	f0_balb.idr	intron (NM_027769, intron 1 of 15)	PB1D9|SINE|Alu	3037.0	NM_027769	70568.0	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	3.13545766453498	3.1391020752839	3.13593027574486	2.96143125139391	2.78523606696294	2.74296954597862	2.55473432954803	2.70996042380854	-1.87516481876915	0.00641103889185034	0.0570057885425378
Merged-chr1-133382262-3	chr1	133382186	133382386	+	722.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011439)	TTS (NM_011439)	18714.0	NM_175443	214253.0	Mm.52111	NM_175443	ENSMUSG00000070644	Etnk2	4933417N20Rik|AI197444|EKI 2|Eki2|Tuc1	ethanolamine kinase 2	protein-coding	3.32873265946119	3.80976440227326	3.09432427431278	2.75220487049862	2.7771787253933	3.27365134308305	3.144627366515	2.8857862977597	-1.02783579228498	0.138601264830029	0.414151355078991
Merged-chr10-77622341-4	chr10	77622275	77622475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019803)	promoter-TSS (NM_019803)	54.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	6.67566923488884	6.91278319606174	6.64621267313162	6.75082461374617	6.41696409930115	6.83791919297183	6.70166674779846	6.65687703385393	-0.145435260504434	0.495109444531	0.765543520498635
Merged-chr6-119480183-11	chr6	119480175	119480375	+	914.636353	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133940, exon 1 of 1)	exon (NM_133940, exon 1 of 1)	607.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	3.97391828398796	3.8523644770175	3.66807019069582	3.87405187680333	3.68838963636983	3.95109419251889	3.5962003447834	4.10120954549257	-0.00941531285737275	0.983893193395737	0.994177974055515
Merged-chr11-120071247-4	chr11	120071132	120071332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009734, intron 13 of 25)	intron (NM_009734, intron 13 of 25)	15595.0	NM_009734	12009.0	Mm.2556	NM_009734	ENSMUSG00000039781	Cep131	AZ1|Azi|Azi1	centrosomal protein 131	protein-coding	6.21820320043947	5.80108289112112	5.7342271900376	6.12779071700037	5.49776622846776	5.5954137610211	5.89466173699369	6.02665285516275	-0.367273438247453	0.190594006505148	0.489920559559021
Merged-chr6-72374987-4	chr6	72374867	72375067	+	888.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016872, intron 1 of 2)	intron (NM_016872, intron 1 of 2)	5501.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	4.32212068148159	4.28452920846832	4.32279984417129	4.00438790149502	4.37965791264942	4.11224319330231	4.21713069381956	4.27736577957099	0.0791229644621073	0.843981193102867	0.94088019607581
Merged-chr17-87531916-6	chr17	87531896	87532096	+	928.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85061.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	3.05226135714434	3.02106034179881	3.56141416880085	2.91957134519421	3.17693318023009	3.36011883491416	3.44901506944301	3.46221015148849	0.767585037147817	0.188986653661994	0.48779670955222
Merged-chr6-116108168-4	chr6	116108051	116108251	+	814.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	85223.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	4.34319882405742	4.8131294910774	4.299542530044	4.47060830780598	4.35565328362765	4.17744455226562	3.8641384069124	4.42532062534999	-0.647191199148288	0.128086090461867	0.39829793940521
Merged-chr18-20651264-4	chr18	20651192	20651392	+	841.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	MTD|LTR|ERVL-MaLR	-13958.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	3.52387634868701	4.28678613268694	3.96860046496889	3.91243534734008	3.86341401504507	3.76866324118695	3.80358540920579	4.0568549095298	-0.207007425911866	0.666923730383437	0.862183552279603
Merged-chr17-21579691-4	chr17	21579605	21579805	+	933.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357347, intron 4 of 6)	intron (NM_001357347, intron 4 of 6)	12727.0	NM_001357347	381066.0	Mm.441097	NM_001002008	ENSMUSG00000067931	Zfp948	-	zinc finger protein 948	protein-coding	4.86014085544792	4.33138273634308	4.56308806368141	4.67961998978405	4.49055545426917	4.41358748817912	4.96207802162085	4.85763508050353	0.162623821664576	0.669749242871731	0.863615758960093
Merged-chr2-152080933-4	chr2	152080830	152081030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160410)	promoter-TSS (NM_001160410)	-599.0	NM_001160410	545474.0	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	5.77204572150851	5.32647786989693	5.89133116542841	6.29225595646559	5.70086903615826	5.58285953918742	6.26089540875363	5.84116838298125	-0.0156560268651301	0.96162398049176	0.986267404712186
Merged-chr14-9487668-4	chr14	9487567	9487767	+	914.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-396428.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	5.09123902089168	4.36421584701188	4.72052601987732	5.23631162464959	4.70240644039787	4.8948984501248	4.69838697538124	4.55030415584959	-0.399306562582865	0.306992376146797	0.619287657993402
Merged-chr12-85985763-4	chr12	85985653	85985853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	93288.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	5.62328364349287	5.66844482654098	5.68004587581081	6.09138415214123	6.02319151807323	5.98589570451241	6.17627016051495	6.14866638288347	0.440737920393421	0.0960052207673353	0.339521816912513
Merged-chr17-94835370-3	chr17	94835271	94835471	+	730.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045963)	promoter-TSS (NR_045963)	-572.0	NR_045963	100038746.0	Mm.456686	NR_045963	ENSMUSG00000066057	Gm1976	100038868	predicted gene 1976	ncRNA	4.27151183358833	4.12524425869242	3.85856264697464	3.96021126507238	4.09190400101546	4.0327188456145	3.84372184393402	4.10276907787274	-0.0886981388796322	0.836360661766884	0.937720204739175
Merged-chr6-122852904-4	chr6	122852826	122853026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009779, intron 1 of 1)	MTD|LTR|ERVL-MaLR	3231.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	6.24031871206205	6.39646736408292	6.26102970367533	6.55837079120456	6.30498032338641	6.31586428710175	6.62415448081461	6.2948586655587	0.00726642633372439	0.974816193250734	0.990966385645806
Merged-chr1-185208500-4	chr1	185208419	185208619	+	858.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 1 of 34)	intron (NM_001163754, intron 1 of 34)	4351.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	4.09254399775164	3.79383847783179	4.23172487066654	4.68500233669924	4.11893164147346	3.8842136085014	4.02656307271211	4.46731323796966	-0.284016164166686	0.558976726187398	0.803520798939503
Merged-chr3-116649088-4	chr3	116648980	116649180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008246, intron 2 of 11)	intron (NM_008246, intron 2 of 11)	13597.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	6.48179175158426	6.09725161674825	6.31538671534881	6.61022922872323	5.94288322465141	5.85808284395175	5.81298613467821	6.56891403732441	-0.476436744595667	0.0891804346403572	0.325827643838722
Merged-chr5-122821380-4	chr5	122821267	122821467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021505)	promoter-TSS (NM_021505)	-25.0	NM_001289519	59008.0	Mm.332667	NM_021505	ENSMUSG00000029472	Anapc5	2510006G12Rik|AA408751|AA536819|AA986414|APC5|Anpc5	anaphase-promoting complex subunit 5	protein-coding	6.70421846154407	6.81728275526582	6.62659474132291	6.53222923370585	7.07957830651593	6.89756751139647	7.04911767216963	7.02212977052159	0.494723642324512	0.0120901559251568	0.0904608689007822
Merged-chr7-101900503-1	chr7	101900403	101900603	+	1000.0	f0_balb.idr	TTS (NM_027532)	TTS (NM_027532)	3282.0	NM_001282088	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	4.74504909172499	4.43315826418757	4.84941309822953	4.82109874644166	4.45854147635047	4.64116352546034	4.20260404350537	4.84609484852798	-0.369699916070598	0.334066859475778	0.644805241742718
Merged-chr19-41335910-4	chr19	41335803	41336003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	49167.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	7.11944675348984	7.23461926168712	6.72458939771794	6.8046849425162	7.00481129834052	6.77521514355805	6.549638598088	6.61069590423875	-0.322876674624281	0.162114737937742	0.4511892446401
Merged-chr10-39258511-4	chr10	39258425	39258625	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-94731.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	4.42290576178207	4.07193136395649	4.75753831426811	4.63941437365963	4.2747844491268	3.76242810420209	4.7657412360563	4.54198033936882	-0.255210015436054	0.594825532000109	0.823614837620898
Merged-chr10-67490031-4	chr10	67489921	67490121	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47848.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	5.0039856759826	5.1907490001894	5.11243418845664	5.63150409486496	5.23823570458872	5.1450050031698	5.33496216637462	5.41325841260787	0.00156095898906825	0.99615781281459	0.998563054228531
Merged-chr11-94073489-4	chr11	94073400	94073600	+	735.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025430, intron 5 of 25)	B3|SINE|B2	29295.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	3.69699097180443	3.69347267449462	3.46440730942835	3.37966430372279	4.08695548615286	3.81707699126624	3.73421833283997	3.89279396588759	1.02899405622091	0.0288771510071013	0.163286203649068
Merged-chr1-154677919-4	chr1	154677824	154678024	+	811.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009782, intron 3 of 46)	intron (NM_009782, intron 3 of 46)	47996.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	3.78349782887305	3.80785319103374	3.62137388365425	3.59188438566095	3.88356452666356	3.95478484792347	3.54955248811684	3.97062343381056	0.448339568675201	0.33297911071231	0.643932741578704
Merged-chr4-88698973-4	chr4	88698898	88699098	+	905.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7730.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	4.44184217188454	4.05059920827776	4.35580287438506	4.44472734057566	4.68691812784176	4.52932841934651	4.46315237830597	4.52081442078508	0.499857282126244	0.185950947993516	0.483870824275444
Merged-chr11-76647758-4	chr11	76647647	76647847	+	802.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24723.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	3.63546539344121	3.66496520413314	3.47316931256326	3.36710386069047	3.64846067342459	3.70083722299409	3.51606165729045	3.47136192543223	0.186369341356828	0.70448129805164	0.88127019884038
Merged-chr2-27281158-4	chr2	27281069	27281269	+	820.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 18 of 29)	intron (NR_133905, intron 18 of 29)	-33866.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	3.69235409480105	3.75838990265121	3.53022302242985	3.53505002844627	3.53420396698212	3.45868119052828	3.82006851037491	3.7885701164707	0.0914953268177535	0.850175623991117	0.943475969197813
Merged-chr1-136137780-4	chr1	136137705	136137905	+	862.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	6415.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	3.65177771504087	3.76979236969857	3.87372600186305	3.97746905708533	3.75613579004546	4.27322080253383	3.85762054271493	4.06032677947648	0.443555670421438	0.336587001723704	0.646532982396685
Merged-chr2-93976643-6	chr2	93976491	93976691	+	893.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3443.0	NR_045827	70852.0	Mm.437014	NR_045827	ENSMUSG00000027196	Alkbh3os1	4921507L20Rik	alkB homolog 3, opposite strand 1	ncRNA	3.82902268424591	3.86127876905278	4.06853105869925	3.94326518540437	3.81983044373045	3.89540021870007	3.86506274961727	4.02170792842059	-0.0833595448203693	0.847134588578701	0.9422142432572
Merged-chr11-100931747-4	chr11	100931641	100931841	+	954.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_213660, intron 1 of 23)	intron (NM_213660, intron 1 of 23)	7799.0	NM_213660	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	4.85100175873328	4.66637114818589	4.62186123887602	4.30807588392298	4.97756471035735	5.12333789736221	4.71948998194606	4.73884037524528	0.614850933940649	0.087650258307319	0.322855399299144
Merged-chr4-63594041-4	chr4	63593919	63594119	+	874.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6745.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	3.79790385338947	3.76284027581048	3.95926836382005	4.18144901619206	4.13380952015198	3.97528580711544	4.25108201963957	4.1868841739067	0.489776049493216	0.266984113418046	0.578603769607328
Merged-chr5-16293434-3	chr5	16293320	16293520	+	826.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110843, intron 10 of 38)	intron (NM_001110843, intron 10 of 38)	-260075.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	3.36055905871152	3.38898244555834	3.57147865712714	3.42497025144653	3.49084023047729	3.41408243917407	3.34863701383452	3.23983968890579	-0.19571547977519	0.703208390849139	0.880656761361176
Merged-chr8-111248044-3	chr8	111247927	111248127	+	865.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	11175.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	3.48003927403193	3.76597922905014	3.64933625385471	3.57064819913252	3.68245140397304	3.53331744201321	3.73490243025839	3.79635185446075	0.223656019816471	0.63553473390625	0.845767618156396
Merged-chr17-34972299-5	chr17	34972157	34972357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013558)	promoter-TSS (NM_013558)	-101.0	NM_010479	193740.0	Mm.6388	NM_010479	ENSMUSG00000091971	Hspa1a	Hsp70-3|Hsp70.3|Hsp72|hsp68|hsp70A1	heat shock protein 1A	protein-coding	7.52447138877018	7.99431224500882	7.77506765809503	6.4774210029499	7.49987840924498	7.8829015554418	7.60238206964245	7.7237416781349	0.16901636955674	0.566243152868175	0.807835530970224
Merged-chr9-46013240-4	chr9	46013186	46013386	+	968.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357241)	promoter-TSS (NM_001357241)	466.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	4.50692779756172	4.1463987550335	4.75250071566795	4.72175270847588	4.66296151488328	4.8500337888306	5.08061512266634	4.88970104681783	0.654390482661624	0.0820996353527166	0.311105775548531
Merged-chr16-32113748-4	chr16	32113666	32113866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13964.0	NM_025892	66994.0	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	7.47689623097524	7.33614958527317	7.2835074588943	7.19002522279252	7.27804569463772	7.33905077658901	7.01741764141302	7.25719507908303	-0.12044990791413	0.521482055218689	0.781432035905523
Merged-chr2-109278219-3	chr2	109278126	109278326	+	923.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029790)	promoter-TSS (NM_029790)	64.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	3.41658706889847	3.81711803764494	3.83063068759464	3.65698354971669	3.21160512819844	3.65043173713807	3.46349934263756	3.47471474241623	-0.786650166335298	0.131582541414968	0.403904809478786
Merged-chr2-144011398-4	chr2	144011298	144011498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024281)	promoter-TSS (NM_024281)	-135.0	NM_024281	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	9.29688293369429	9.62060824365073	9.71200253613031	9.53138741340028	9.48864023659518	9.60685330542683	9.61644786135715	9.47851688296828	-0.00141724721005686	0.992451558777691	0.997232174860037
Merged-chr13-9418805-4	chr13	9418698	9418898	+	928.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	142273.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	4.58340873375548	4.7001932771312	4.81780020838858	4.75525883576411	4.91516002255429	4.62672661527418	4.86346046336149	4.77850009314492	0.183231128663386	0.584200085590436	0.817552638829506
Merged-chr5-24577487-4	chr5	24577325	24577525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190443)	promoter-TSS (NM_001190443)	42.0	NM_013853	27407.0	Mm.21629	NM_013853	ENSMUSG00000028953	Abcf2	0710005O05Rik|Drr3|E430001O06	ATP-binding cassette, sub-family F (GCN20), member 2	protein-coding	8.40630619146696	8.63952220140775	8.46028133080727	8.37973846262599	8.6654429959034	8.86400303526452	8.70913430015961	8.79141889243151	0.356148020540342	0.019365601693044	0.125220218287534
Merged-chr10-43827477-3	chr10	43827366	43827566	+	766.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131055, intron 1 of 2)	ORR1E|LTR|ERVL-MaLR	1559.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	3.47005441200816	3.42422084678857	3.41879509506498	3.46056868261241	3.2702500362724	3.0916682579365	3.17737502491271	3.36301177438523	-0.77718150161934	0.146251135288419	0.426325233790415
Merged-chr13-30974058-4	chr13	30973963	30974163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025588)	promoter-TSS (NM_025588)	-16.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	6.97770025172061	6.99544514478854	6.91293318199674	7.09401454072438	6.87359504915336	7.03488678716913	7.34540073193564	7.20774546649034	0.163019047709782	0.419078131436979	0.712251159515261
Merged-chr6-127267033-4	chr6	127266938	127267138	+	799.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	40929.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	4.37015348515481	4.39627426065577	4.13895729415388	3.83044569026556	4.6732664118457	4.58395358140343	4.30805835839192	4.23411836716474	0.665160775564744	0.114467011679037	0.37422595187866
Merged-chr15-95824428-4	chr15	95824337	95824537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_155276)	TTS (NR_155276)	5635.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	7.16677474878727	7.29543318793637	7.24363533456079	7.30708138825801	6.83127002307161	6.83060536878683	7.10964821938761	6.93133295590724	-0.454546769560576	0.0158551772297759	0.109037561397713
Merged-chr14-31781690-4	chr14	31781518	31781718	+	649.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024604, intron 1 of 27)	intron (NM_001024604, intron 1 of 27)	48797.0	NM_001024604	105522.0	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	3.80910419305296	3.33602114585156	3.67253064914436	3.3259861877277	3.14057095714376	3.10588625378607	3.83370924754011	3.51662800434601	-0.378345830456533	0.524921267678854	0.783127443769653
Merged-chr4-150202898-4	chr4	150202796	150202996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1761.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	6.60838749889626	6.39790421115331	6.5283709030709	6.68204457780398	6.66868530355829	6.65396725623731	6.97432528495077	6.55679294599209	0.225543293816161	0.297978891980119	0.610164772946546
Merged-chr3-87017922-4	chr3	87017814	87018014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18574.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	7.18294290981514	6.91137190118788	7.10582803154606	7.14406270231709	7.04670651623068	6.98458811475106	7.02318717036316	6.84557529798623	-0.153243790878485	0.422305311321418	0.714626353223175
Merged-chr4-145258228-4	chr4	145258132	145258332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11362.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	8.18668330113282	8.11125959484656	7.82474855940492	7.51665715056946	7.79203151105522	7.72545081430887	7.63528938234164	7.57951229434693	-0.313286616216346	0.127037250415793	0.396456701479558
Merged-chr6-131245224-4	chr6	131245124	131245324	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001170851, exon 2 of 9)	exon (NM_001170851, exon 2 of 9)	2138.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	5.41484864293794	5.08513793187042	5.72670314253516	5.51364265218338	5.02504014249848	4.98128672667798	5.18386501108732	5.10629221910671	-0.69775751549173	0.0255513013750232	0.150743147996086
Merged-chr1-171226440-4	chr1	171226346	171226546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_131173)	TTS (NR_131173)	1392.0	NM_013474	11807.0	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	6.51419129453046	6.25158331067359	6.57773216713813	6.70589615275224	6.45624592783851	6.11681508047093	6.3477274514574	6.20448662753433	-0.347595636946287	0.137711774171751	0.412775776888494
Merged-chr6-4797495-4	chr6	4797407	4797607	+	813.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50201.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	4.5530909043715	3.73329871917258	4.18695316383282	4.02962099258535	4.456287950812	4.45045191226803	4.34291177839976	4.136366401559	0.498643869212109	0.256908132300112	0.568647554151895
Merged-chr10-61151595-3	chr10	61151482	61151682	+	909.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3898.0	NM_001316674	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	4.04220421393193	3.83436005360341	3.86144933412244	3.66709884377048	3.97693084695678	3.7084615806131	3.69173016680481	3.70410515389935	-0.180658198816868	0.69845926401262	0.878383574853872
Merged-chr4-32161040-4	chr4	32160921	32161121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	196914.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	6.02608976386629	6.2819610532804	6.76074224040386	6.61320632020691	5.91780286083639	5.89718295667557	6.37170218368212	6.64821374762736	-0.314525134613266	0.280195541015825	0.592268171704146
Merged-chr15-58980363-4	chr15	58980266	58980466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	46556.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	6.43198664019184	6.24452630670162	6.31539675719293	6.37282661127409	5.98250986956542	5.97841191989749	6.03121241628957	5.94519339473381	-0.55290419800582	0.0143885502280087	0.101859161297731
Merged-chr4-108459412-4	chr4	108459331	108459531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175472)	promoter-TSS (NM_175472)	5.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	4.5157244953416	4.68802360630318	4.68594248254832	4.8428152518231	5.0081352841982	5.04154512477918	4.77819982525921	4.76056573323308	0.42019683448822	0.216707751952927	0.523399370330695
Merged-chr17-74339337-7	chr17	74339259	74339459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162870, exon 1 of 17)	exon (NM_001162870, exon 1 of 17)	372.0	NM_016962	50850.0	Mm.19804	NM_016962	ENSMUSG00000024068	Spast	Spg4|mKIAA1083	spastin	protein-coding	5.57920901166166	5.31824025333074	5.85357232448382	5.37859651891511	5.20202331651288	5.30504181588385	5.13641642207472	5.74276399632988	-0.304904800037007	0.334707287726168	0.645165319599757
Merged-chr9-89253597-4	chr9	89253497	89253697	+	996.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	42213.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	4.89614457153607	4.86814492790938	5.30178784478009	5.32027090888971	5.06608345275767	4.54706616843898	4.83672965231716	4.92983814665458	-0.498234460886826	0.155575898127718	0.441227933013032
Merged-chr19-37174247-3	chr19	37174139	37174339	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290828, exon 2 of 11)	exon (NM_001290828, exon 2 of 11)	396.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	3.57008075110527	3.39365260783411	3.82073995874912	3.8407181999059	3.45785499791635	3.68717906261758	3.71064949586992	3.45336906483696	-0.308901596193817	0.540961083983636	0.793009827469438
Merged-chr7-126200481-4	chr7	126200399	126200599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311143)	promoter-TSS (NM_001311143)	2.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	7.3485979668693	7.31254706552079	6.78495873293565	7.16544314724024	7.71716319835269	7.66085867982676	7.49139734081893	7.13628068573523	0.471640257340897	0.0315517843018097	0.173135588637835
Merged-chr12-80812092-4	chr12	80812008	80812208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	21576.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	5.98406448456221	6.07942801328671	6.14400664187053	5.78174597009597	5.87490812382947	5.9280432933122	5.69789150380586	5.7481453769781	-0.279713576456491	0.270782383049612	0.582604942081796
Merged-chr17-13055328-3	chr17	13055244	13055444	+	839.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3064.0	NM_001013832	436440.0	Mm.335670	NM_001013832	ENSMUSG00000071311	Gpr31b	12-HETER|GPR31c(t)|Gpr31|Gpr31c	G protein-coupled receptor 31, D17Leh66b region	protein-coding	4.02036629815123	4.07387573354426	4.79974616135123	4.27144909894012	3.85571689150957	4.09365934465334	4.00399366525213	3.91220407259136	-0.929706270105472	0.0420332822597395	0.207729651536718
Merged-chr5-42984963-4	chr5	42984859	42985059	+	840.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-248504.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	3.66362283760827	4.14006915352136	3.66406189488111	4.2003917474601	4.03650457697444	3.65582489738136	3.81340239889877	4.10376243106138	-0.105765707810704	0.831352886598458	0.935330792751506
Merged-chr8-117268219-4	chr8	117268119	117268319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	11200.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	5.87381770308948	5.65556896633707	5.24935044764462	5.31869089647278	5.86896249017602	5.65071120522266	5.84475271879756	5.60948555797775	0.363550212450398	0.208361405265064	0.512632002535757
Merged-chr2-14184556-3	chr2	14184461	14184661	+	875.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081310, intron 1 of 3)	intron (NM_001081310, intron 1 of 3)	10037.0	NM_001081310	625286.0	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	3.58165318613439	3.54824925452596	3.52618028446603	3.8716948707408	3.74514957106678	3.7522858393412	3.56837856774596	3.46601942876418	-0.0419704492434093	0.932623163478419	0.975722604390767
Merged-chr2-181497107-4	chr2	181496999	181497199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291201)	promoter-TSS (NM_001291201)	-43.0	NM_001291203	66314.0	Mm.136648	NM_025482	ENSMUSG00000000827	Tpd52l2	2810411G23Rik|AU016537|C86069|D54	tumor protein D52-like 2	protein-coding	7.86197450157886	7.89863705282349	7.81740492016399	8.02954549230818	7.92859897650451	8.03309088336403	8.18202992875933	8.16939700031889	0.216603305624449	0.190174662097322	0.489280787733148
Merged-chr6-46281201-4	chr6	46281098	46281298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 10 of 23)	L1MB1|LINE|L1	-963198.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	6.19158294090755	6.20243396903803	6.58871124430246	7.08049448705187	5.92269590566606	6.0004476205719	6.20046961720013	6.16785563201433	-0.770122118752689	0.00728188099650613	0.0626592126995056
Merged-chr11-96889018-3	chr11	96888839	96889039	+	925.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27575.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	3.85574634216756	3.36005099485921	3.4434893196713	3.94550746943121	3.22195381888782	3.10827160352938	2.98846666893727	2.99527815680833	-2.2546979917212	0.000399754162302184	0.00643757952907401
Merged-chr2-14055229-4	chr2	14055112	14055312	+	890.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012396, intron 1 of 5)	CpG	823.0	NM_001012396	30963.0	Mm.241205	NM_013935	ENSMUSG00000063275	Hacd1	Ptpla	3-hydroxyacyl-CoA dehydratase 1	protein-coding	4.26098898690269	4.17264074144814	4.62125047216983	4.2710843785874	4.46338693305433	4.43476801757613	4.14882473915824	4.47190203301507	0.125408625767083	0.749509602565609	0.901354058272243
Merged-chr7-100961320-4	chr7	100961233	100961433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	3033.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	5.51390473388991	5.56018355159363	5.79182793799531	6.0720581479527	5.31074767394506	5.51160042055709	5.4872205132659	5.51099653845402	-0.548435722225933	0.05866249188828	0.254916819909395
Merged-chr5-117978082-4	chr5	117977992	117978192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346588, intron 2 of 11)	intron (NM_001346588, intron 2 of 11)	1322.0	NM_001346588	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	5.38410862136426	5.39613440653303	5.44535867245686	5.72737817582381	5.51517025327743	5.39983482162584	5.72783661538457	5.94445115984572	0.250847353380625	0.389321085056307	0.689645309635064
Merged-chr8-120535184-4	chr8	120535098	120535298	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145897)	promoter-TSS (NM_001145897)	-659.0	NM_001145897	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	5.14639782951832	5.13537856168292	5.04501183552463	5.00664730475416	5.41239962074251	5.25518595027098	5.4615574625624	5.07657613319068	0.440138181886334	0.137970932506073	0.413187184653726
Merged-chr1-156989729-1	chr1	156989629	156989829	+	934.0	f0_balb.idr	Intergenic	Lx10|LINE|L1	-50103.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	2.7255101574894	2.68673596837681	3.00200358790186	3.03952532017726	2.45533921397005	2.39365544504294	2.37009632935372	2.66137034104037	-2.26613488211991	0.00431107272020777	0.0425069739786215
Merged-chr7-4866267-4	chr7	4866173	4866373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026158)	promoter-TSS (NM_026158)	-94.0	NM_026158	67441.0	Mm.41385	NM_026158	ENSMUSG00000052605	Isoc2b	0610042E07Rik|AI553388|Isoc2	isochorismatase domain containing 2b	protein-coding	6.73570064993472	6.69484300444967	6.49256417067852	7.37638481098023	8.28011817455872	8.21463243713724	8.4665445237651	8.01836661673938	1.78635914816608	6.28773976273145e-13	6.96042035103362e-11
Merged-chr1-131974270-4	chr1	131974162	131974362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145977, intron 1 of 4)	intron (NM_145977, intron 1 of 4)	3653.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	6.17289130118325	5.78187740349443	6.09061262064061	6.38062954169911	6.32156790592442	6.32986192897884	6.47510497445869	6.37375834115904	0.3538267498111	0.150407972363069	0.433033574599801
Merged-chr5-24452505-4	chr5	24452402	24452602	+	807.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_139153, exon 1 of 18)	exon (NM_139153, exon 1 of 18)	325.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	4.10811921066669	3.58074890730751	4.02034375863684	3.7210176625783	3.9433080325251	3.99754288342238	3.63880523801187	4.22787540322832	0.282624454141713	0.553981441166363	0.800500121223594
Merged-chr4-123990874-4	chr4	123990774	123990974	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	73441.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	5.77270008506604	5.82712082704257	6.17438591114988	6.448194619741	5.45742942990227	5.33356295134946	5.69398149510133	5.97518398972203	-0.749568177454433	0.0139019365125169	0.099539879189663
Merged-chr11-9537923-2	chr11	9537823	9538023	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 47 of 61)	intron (NM_178259, intron 47 of 61)	345981.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	2.73919322650384	2.75129252318009	3.02832665921124	3.24157442966398	3.15648304626187	3.2041778370885	3.538788220155	3.36833670080801	1.3538123853687	0.0446183019183302	0.215679871799309
Merged-chr4-19682706-4	chr4	19682600	19682800	+	950.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_074090, intron 2 of 24)	intron (NR_074090, intron 2 of 24)	26304.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	5.12233280082195	4.91705267085257	5.1232118505451	5.63372121721722	4.46717014944166	5.16536312880947	4.69760431124045	4.98714474189767	-0.77043981876451	0.040490941247124	0.203308740619994
Merged-chr6-28480175-4	chr6	28480080	28480280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019776)	promoter-TSS (NM_019776)	-168.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	9.61091816664183	9.64756626060569	9.57651813039998	9.66121713577258	9.54142011753123	9.7762135136176	9.74268772251691	9.53900903883421	0.0334761019253507	0.808147174452717	0.925975801123789
Merged-chr8-117853662-4	chr8	117853550	117853750	+	671.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-51676.0	NM_001357232	68533.0	Mm.181836	NM_026758	ENSMUSG00000031843	Mphosph6	1110001M01Rik|AA536809|C86426	M phase phosphoprotein 6	protein-coding	4.14734103944187	4.05729644884466	4.43152901313659	4.32628576834542	3.68228041865284	3.84330436783554	4.17370059279876	4.14540470119002	-0.736711433528614	0.0980255490449403	0.343090300315972
Merged-chr17-72908973-3	chr17	72908873	72909073	+	920.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	-9332.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	4.34774358380461	4.61899039284986	4.60752625994097	4.2115753091795	4.07152166955807	4.09327873053746	3.83928872156669	3.91020966072347	-1.18315775617565	0.00606880488303437	0.0547214926234486
Merged-chr10-58383455-4	chr10	58383358	58383558	+	790.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201242, intron 1 of 9)	intron (NM_201242, intron 1 of 9)	-10915.0	NM_001193303	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	4.15941882842684	4.39762367300987	3.73799239394588	4.30349630764987	4.02108646922815	4.08856602443993	4.09639689405927	4.15749117937385	-0.24050125991077	0.582223700179986	0.816501953640427
Merged-chr10-12997296-4	chr10	12997194	12997394	+	977.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11156.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	4.99603500153387	5.34489650063836	5.0337749012748	5.3871573196047	5.39628806653262	5.28012193716468	5.50990433537701	4.99353789229941	0.170932250487793	0.588593595301619	0.819792652773191
Merged-chr14-103469633-4	chr14	103469555	103469755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43686.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	7.68931058107681	7.71084612258525	7.29399684297086	7.47330960292343	7.43339397989486	7.50348734817493	7.34130767308419	7.33156900246031	-0.195625003887164	0.293048875033655	0.60553679205796
Merged-chr19-11447429-2	chr19	11447329	11447529	+	975.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021718, intron 1 of 6)	intron (NM_021718, intron 1 of 6)	3871.0	NM_021718	60361.0	Mm.33957	NM_021718	ENSMUSG00000056290	Ms4a4b	AI463180|Chandra|Ly116	membrane-spanning 4-domains, subfamily A, member 4B	protein-coding	3.49944536582873	3.62264933377971	3.60250489180184	3.30912308508633	3.31067700681852	3.56079824691059	3.37578706429902	3.26505252097378	-0.437535369279289	0.40241371564104	0.699908650354484
Merged-chr14-70883006-4	chr14	70882891	70883091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7116.0	NM_001302095	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	6.71810862854445	7.0690460582094	6.83871946053593	6.23143709533488	7.42237935856354	7.46529660878867	7.33848206056941	6.86200560313209	0.767625589246184	0.002448778110719	0.0273265514146944
Merged-chr15-100119581-4	chr15	100119458	100119658	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 2 of 37)	intron (NM_001159361, intron 2 of 37)	-34838.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	5.35008422916184	5.28901969782255	5.07884950029455	5.54504579275676	4.91418679143662	5.14944069730653	4.91280036371079	4.72977489431668	-0.77812828426836	0.015322561945847	0.106425120681444
Merged-chr7-141901831-2	chr7	141901731	141901931	+	800.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347562, intron 1 of 6)	intron (NM_001347562, intron 1 of 6)	630.0	NM_023764	54473.0	Mm.103551	NM_023764	ENSMUSG00000025139	Tollip	4930403G24Rik|4931428G15Rik	toll interacting protein	protein-coding	2.97105456639041	2.70579328990886	2.65578821716113	2.85665846431603	2.69650554286434	2.96207415889208	2.90305385034996	2.85278585359293	0.216551770041186	0.73054786483202	0.893140720112921
Merged-chr4-151851380-4	chr4	151851306	151851506	+	790.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 1 of 23)	B4|SINE|B4	10362.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	4.13424554039403	3.99690615193105	3.95106818342736	3.48442475545015	3.80782116445243	3.97093319138115	4.02818876293857	4.1742536030927	0.268869039304431	0.57077075794601	0.810192301084349
Merged-chr3-100916997-4	chr3	100916936	100917136	+	905.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5457.0	NM_001165952	229644.0	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	3.65305575141684	3.78364656868113	3.85658025127435	3.6673595014889	3.81186408918329	3.4594830532737	3.743593487778	3.90022536660911	0.015656699834643	0.973453178363568	0.990485651958264
Merged-chr4-88094584-4	chr4	88094502	88094702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081184)	promoter-TSS (NM_001081184)	-28.0	NM_001081184	230393.0	Mm.287210	NM_001081184	ENSMUSG00000038368	Focad	-	focadhesin	protein-coding	8.74098475673776	8.75660910807599	8.82017470598218	9.01934987311678	8.75995668698743	8.63111364541145	9.06288798061339	8.65834402990548	-0.066120666038997	0.694475672578448	0.87596715638729
Merged-chr7-29231625-4	chr7	29231527	29231727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033525, intron 1 of 2)	intron (NM_001033525, intron 1 of 2)	895.0	NM_001033525	52150.0	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	5.32308604275701	5.60104676673672	5.83899102382151	5.88900763083887	5.3655148291025	4.9690284779101	5.52771988672822	5.49780763055252	-0.571930694585286	0.063098847351182	0.266451878002479
Merged-chr9-99180507-4	chr9	99180435	99180635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40324.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	6.49855811856182	6.30960962741023	6.46688598153543	6.70520383985874	6.46419760248852	6.04037276584023	6.41715403794297	6.28402815093785	-0.286391763569625	0.221829450571187	0.529905643595211
Merged-chr1-166154344-4	chr1	166154252	166154452	+	882.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360926)	TTS (NM_001360926)	24131.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	4.08323434321908	4.13910254028111	3.71944431367761	3.78030012099752	4.09502537058597	4.16155139900466	4.15243086750111	3.88595557190807	0.383067942858278	0.381150691558326	0.683465744746471
Merged-chr17-65699043-4	chr17	65698960	65699160	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 3 of 6)	intron (NM_133685, intron 3 of 6)	-56856.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	4.85582061205658	4.92140887161632	4.77894649267263	5.35746318833311	4.88150964663625	4.91496008247098	5.00786247686405	4.99571581708991	-0.151011516659192	0.660654053933305	0.858993383327997
Merged-chr10-83921419-4	chr10	83921334	83921534	+	911.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	179263.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	4.16445114347341	4.33239020056066	4.44583435642102	4.62514721819406	4.22230533229673	4.29231804486415	4.61823706744834	4.83661911314954	0.218873854362692	0.594052872005324	0.823266307249001
Merged-chr17-36849668-4	chr17	36849579	36849779	+	955.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025599, intron 2 of 9)	intron (NM_001025599, intron 2 of 9)	12533.0	NM_001286726	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	4.79741473881156	4.99610534380462	4.75982884621897	4.95842623724784	5.16630844635415	4.77130082157123	4.8832184835741	4.49950779866112	-0.0419027065456678	0.905618579642089	0.964927622303219
Merged-chr13-112927509-4	chr13	112927430	112927630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172594)	promoter-TSS (NM_172594)	-150.0	NM_028151	72198.0	Mm.291029	NM_028151	ENSMUSG00000016018	Skiv2l2	2610528A15Rik|Mtrex|mKIAA0052	superkiller viralicidic activity 2-like 2 (S. cerevisiae)	protein-coding	8.93755344694254	9.07321424953381	8.99980809029755	9.14838786441167	8.68105755466775	8.8788228200963	8.88798186079801	8.77304132966089	-0.299505691010777	0.0402875649862107	0.202759569267729
Merged-chr6-38342470-4	chr6	38342411	38342611	+	968.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 1 of 8)	intron (NM_028864, intron 1 of 8)	12092.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	4.46914587058842	4.51311199057829	4.34190203513882	4.31125628509647	4.5701505054674	4.55819786981954	4.44929089028121	4.09358812748776	0.0716470034075027	0.852229491919947	0.944363979741224
Merged-chr4-59450407-4	chr4	59450303	59450503	+	876.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11770.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	4.20027895408852	4.30512019839993	3.85351100621656	4.18453688293097	4.11550972798501	4.08514904997425	3.89385333146831	4.28227507003209	-0.126096305840799	0.76660704863067	0.908660493187862
Merged-chr3-127634278-4	chr3	127634146	127634346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009718, exon 2 of 2)	exon (NM_009718, exon 2 of 2)	1110.0	NM_009718	11924.0	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	5.15861913718771	5.15270753901943	5.05485012562842	5.37895441798258	5.30736645973736	5.33477421026626	5.5302093250218	5.37095308135637	0.317921619311518	0.279519222532287	0.591517173100493
Merged-chr4-119140329-4	chr4	119140232	119140432	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31587.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	4.66070369460032	4.45304108992148	4.01280213341975	4.02010649885504	4.46748873768758	4.72000667406634	4.83868790947913	4.62137388848358	0.814263201552474	0.0452152341503826	0.217575388831131
Merged-chr13-100152852-4	chr13	100152751	100152951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 12 of 15)	intron (NM_001126182, intron 12 of 15)	27996.0	NM_011420	20595.0	Mm.2025	NM_011420	ENSMUSG00000021645	Smn1	AI849087|Gemin1|Smn	survival motor neuron 1	protein-coding	7.56242311774779	7.55332485394767	7.16015886968188	7.45840225754245	7.41528554790438	7.54512730800164	7.34146990573126	7.13113920389991	-0.105255925494039	0.588077160039837	0.819488296454385
Merged-chr1-62707143-3	chr1	62707056	62707256	+	773.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 1 of 16)	intron (NM_001077404, intron 1 of 16)	3839.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	3.54076763234362	3.9221604735269	3.79220026873918	3.49139851871176	3.60656968801309	3.47762309341607	3.35205206916153	3.42365409190351	-0.712075864137594	0.168187159241555	0.460190428525203
Merged-chr8-41041879-3	chr8	41041774	41041974	+	900.8110960000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005865)	promoter-TSS (NM_001005865)	57.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	3.87568671263231	3.92644633924463	3.87619866948827	4.27795588329242	4.52698469721681	4.39497700336353	4.11653863892797	4.22229930246342	0.767155913699249	0.0808738661782597	0.308528294602977
Merged-chr3-9886822-4	chr3	9886718	9886918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-53139.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	7.16516155061434	7.47480104330636	6.99196585464826	6.76189170964287	7.48473105398461	7.74749196083039	7.72007992815355	6.97359799731662	0.532492258633282	0.0316518706488663	0.173484354066276
Merged-chr1-182562804-4	chr1	182562709	182562909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2198.0	NM_001145806	170725.0	Mm.189201	NM_130890	ENSMUSG00000038599	Capn8	nCL-2|nCL-2'	calpain 8	protein-coding	6.34233942238415	6.27405694471724	6.32547239948192	6.6532587646333	6.35342157588087	5.76827001204094	6.4614429723948	6.14643090777459	-0.30459198590286	0.237480179051629	0.547644711485644
Merged-chr13-119366362-3	chr13	119366269	119366469	+	947.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008710, exon 12 of 17)	exon (NM_008710, exon 12 of 17)	42642.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	3.15801186537972	3.21346705725067	3.56651078674412	3.73567701731017	4.01589733849551	3.80014511051794	4.14741523992637	3.92264217046155	1.54769448924714	0.00665091594971785	0.0585897953446741
Merged-chr2-25581860-4	chr2	25581802	25582002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1803.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	5.15118796592551	5.59743613096047	5.27714282468109	4.88953514897573	5.21435720074339	5.42041523748421	4.98934266632069	5.0811461709948	-0.108135545775848	0.74678701554116	0.900253617240193
Merged-chr6-124966132-4	chr6	124966019	124966219	+	885.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164089)	promoter-TSS (NM_001164089)	-581.0	NM_001164089	26894.0	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e|SGN7a	COP9 signalosome subunit 7A	protein-coding	4.16956536351453	3.82651723660292	3.60034300802509	3.36810543010296	4.00703727924418	3.78581365891085	4.30637812995212	4.36123793088095	0.997076910358856	0.0481032351275772	0.226278265478334
Merged-chr12-72843723-4	chr12	72843624	72843824	+	844.770874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74041.0	NM_029444	75801.0	Mm.242892	NM_029444	ENSMUSG00000021098	4930447C04Rik	4921504I02Rik|A930035O15Rik|Six6OS|Six6as|Six6os1	RIKEN cDNA 4930447C04 gene	protein-coding	4.00841938428415	4.36451971417402	3.90307350611839	4.02565282341395	4.22411401804906	3.96943980358265	3.7739926631482	4.60382128159224	0.241505741883905	0.605172292175542	0.828698063423653
Merged-chr11-23688282-4	chr11	23688188	23688388	+	923.712524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 4 of 17)	ID4_|SINE|ID	22312.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	4.9005275129676	4.30038578372118	4.57159560256171	4.86820983245902	4.47609664244973	4.70429802947866	4.84491306436515	4.60977282397537	-0.0658751647539992	0.861545436598555	0.947717289190482
Merged-chr11-6522961-4	chr11	6522894	6523094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2036.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	5.35000157381255	6.14788422990384	4.94688160941137	4.78108027934639	5.57613977785837	5.4067791056723	5.10518157125017	4.53262013859784	-0.39736556915862	0.555581835717299	0.801591959543503
Merged-chr7-30094934-7	chr7	30094828	30095028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011981)	promoter-TSS (NM_011981)	-148.0	NM_011981	26466.0	Mm.195092	NM_011981	ENSMUSG00000049421	Zfp260	AI480997|Ozrf1|PEX1|Zfp63|Znf260	zinc finger protein 260	protein-coding	4.92100802212714	5.20020015880468	5.5608179049566	4.95192836948324	5.37122929952394	5.32690366103718	5.4009751303966	5.97854951087098	0.661947166476469	0.0483255503820147	0.226927322248412
Merged-chr10-12868776-1	chr10	12868676	12868876	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-7041.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	4.62341790516824	4.48059209798774	4.5146064339033	4.32470024686855	4.46431629392222	4.18615758864223	4.14785318389126	4.11179820541199	-0.556120484230815	0.162839603566139	0.452364775328072
Merged-chr15-84466618-4	chr15	84466513	84466713	+	993.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19516.0	NM_001163145	72301.0	Mm.275387	NM_001163145	ENSMUSG00000062760	1810041L15Rik	Kiaa1644|Shisal1	RIKEN cDNA 1810041L15 gene	protein-coding	4.65841168602167	4.96656729877917	5.06029254193137	4.88824321195175	5.03037842909057	4.55800129355193	4.97182379612616	5.02519538322408	0.0335244427282753	0.92122579973667	0.970817571020778
Merged-chr7-47056475-4	chr7	47056380	47056580	+	982.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5840.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	5.80992166794983	5.32513265761976	5.22114064947566	5.664269040861	5.33277287816091	4.98439139125082	5.12896290544557	5.31197884997766	-0.587082503234305	0.0608444358572779	0.260705881283721
Merged-chr10-86916006-2	chr10	86915906	86916106	+	776.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 31 of 68)	MTC|LTR|ERVL-MaLR	91936.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	2.81735970848957	2.90293990632262	2.94829869878752	2.63470400546484	2.95891402470726	3.05868352705578	3.16202476757455	3.06539810865663	1.05343645925686	0.0785040545382076	0.303220863572603
Merged-chr11-97685833-4	chr11	97685736	97685936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085500)	promoter-TSS (NM_001085500)	-116.0	NM_001085500	217149.0	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	7.82407230450814	7.82298273434983	7.34216332250712	7.47602489733271	7.5334593575344	7.66134541862298	7.7728047991805	7.49775282143403	-0.0146782596313571	0.940115258303439	0.978439618820904
Merged-chr19-32494831-4	chr19	32494738	32494938	+	940.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010799, intron 3 of 4)	intron (NM_010799, intron 3 of 4)	9069.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	4.60461524806955	4.36811698497541	4.5119234635378	4.53832587633113	5.40803496010341	5.13382579789218	5.18195987532028	5.33847519261613	1.51723713889065	2.60879613696005e-06	8.33444794581146e-05
Merged-chr1-143777804-3	chr1	143777732	143777932	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013835)	promoter-TSS (NM_013835)	554.0	NM_019562	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	5.36704799661728	5.46273550760708	5.80012142818042	5.50297879854595	5.14343068880647	5.35064235064721	5.24770138734437	5.81724451620158	-0.226980329883216	0.464683614165663	0.745527089422867
Merged-chr19-23057511-3	chr19	23057421	23057621	+	785.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83705.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	3.86896857511245	3.83439541131972	4.0033384797059	3.66143283590574	3.91801705277231	3.53992000492424	3.47725287393767	3.71780668049908	-0.458526733694478	0.349916029660228	0.657445704655933
Merged-chr1-119504823-4	chr1	119504716	119504916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022327)	promoter-TSS (NM_022327)	-34.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	8.76905592367158	8.62601518165543	8.81871650689348	8.85445695417554	8.64379519604858	8.78626426473843	8.86271652630467	8.71891811862262	-0.0234103481801502	0.874896557914538	0.952974613103639
Merged-chr7-16402070-3	chr7	16401977	16402177	+	836.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198631, intron 1 of 13)	intron (NM_198631, intron 1 of 13)	881.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	3.09721088869998	3.19288510556847	2.89877362813791	2.9208512020912	3.12995032608075	3.26998686317554	3.20255662719878	3.37166531987385	0.844633902354085	0.13212737674344	0.404624813888968
Merged-chr6-129209308-4	chr6	129209220	129209420	+	950.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28705.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	4.15976021613246	3.75497550516373	4.29932664507675	4.32516565837693	4.75256530546056	3.95308888198819	4.27986695074979	4.63997133361254	0.691159603308766	0.134268975929042	0.407911030152443
Merged-chr12-54696937-4	chr12	54696808	54697008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	U1|snRNA|snRNA	-1014.0	NM_025456	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	6.12802241440848	6.53896422407287	5.97126869330661	5.76303928581253	6.55923384454878	6.53655830944229	6.44559596072207	6.37395800257737	0.540431848223149	0.0378230891433623	0.194398201912187
Merged-chr8-110846611-4	chr8	110846512	110846712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310607)	promoter-TSS (NM_001310607)	12.0	NM_001310607	102339.0	Mm.272930	NM_133973	ENSMUSG00000031753	Cog4	AW554810|D8Ertd515e	component of oligomeric golgi complex 4	protein-coding	4.804836933926	5.05099686351905	5.37261379727011	4.91882225034472	4.849434362826	5.29242290824681	4.70361120023874	5.11870189627861	-0.0862560278805884	0.804424891575219	0.924756680030242
Merged-chr6-57803315-4	chr6	57803209	57803409	+	962.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	Lx8|LINE|L1	21816.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	5.3249590725748	5.28322314930173	5.32587726912684	5.71528044049235	4.76344324189678	5.0482553092216	5.51559365634007	5.46257434474264	-0.381363947433136	0.264214058224165	0.576408877627053
Merged-chr2-45109558-7	chr2	45109558	45109758	+	987.31427	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	CpG	619.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	4.37573342073163	5.45698445688802	4.60434779633393	3.70327489177908	4.80343855688722	5.14017046632594	4.62315684565432	4.46938366466599	0.137575673007732	0.853096527828672	0.944678751070911
Merged-chr10-99349491-3	chr10	99349385	99349585	+	959.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86254.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	4.78252505880255	5.10600733967698	5.00903102359986	4.21285247700695	4.80555008241073	4.23217369010503	4.48783433757756	4.36751431658972	-0.675208604184115	0.120960601359089	0.385159463368462
Merged-chr5-64298441-4	chr5	64298349	64298549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	68092.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	5.62232600447783	5.64650652655008	5.56469178000573	5.70958600788553	6.34836324329709	6.47040632058919	5.89765294850552	6.15041147020222	0.935817429130616	0.000260688110575539	0.00452462231409324
Merged-chr17-48323308-4	chr17	48323194	48323394	+	767.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177083, intron 5 of 5)	PB1D11|SINE|Alu	7132.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	3.51430637886419	3.52708389346513	3.56881171200204	3.38790936969219	3.68374231273463	3.78677759983409	3.3278264594438	3.51287751294897	0.31920045716239	0.522194000548718	0.781901398175257
Merged-chr3-65188480-4	chr3	65188368	65188568	+	994.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289450, intron 1 of 14)	intron (NM_001289450, intron 1 of 14)	365.0	NM_001289450	16497.0	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	5.03112927102183	4.74511631527641	5.21369928429567	4.87627559143889	4.98361354993626	4.99306149474521	4.97451878772684	4.89013649556139	-0.0102037151345094	0.974816664416944	0.990966385645806
Merged-chr10-29361907-6	chr10	29361936	29362136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001110196, exon 1 of 3)	5' UTR (NM_001110196, exon 1 of 3)	406.0	NM_026518	68031.0	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	7.78463299840444	7.6843861632463	7.56892652445131	7.82779801034773	7.67876375506562	7.78200264270518	7.97101535797864	7.54548996879819	0.035121905187437	0.845420415001106	0.941532704134742
Merged-chr10-63338565-4	chr10	63338464	63338664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019812, intron 1 of 8)	CpG	471.0	NM_019812	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	5.48114402481802	5.34426029001302	5.60815153548032	5.10608074855349	5.22612809846521	5.48630111405851	5.31534616488497	5.14685554255484	-0.152337857323922	0.616763970187832	0.835150401688917
Merged-chr1-4807776-4	chr1	4807670	4807870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008866)	promoter-TSS (NM_008866)	-53.0	NM_001355712	18777.0	Mm.299955	NM_008866	ENSMUSG00000025903	Lypla1	APT-1|Gm39587|LPL-I|Pla1a	lysophospholipase 1	protein-coding	7.72820986065125	7.70879587572848	8.01008902201711	7.90908352622679	7.77307654654327	7.55584904612136	7.82884160561024	7.54231611765857	-0.210832746464723	0.237038949866441	0.547176760581916
Merged-chr4-43499656-4	chr4	43499556	43499756	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001013377, exon 4 of 12)	5' UTR (NM_001013377, exon 4 of 12)	6291.0	NM_001037913	622404.0	Mm.289109	NM_001037913	ENSMUSG00000028461	Ccdc107	-	coiled-coil domain containing 107	protein-coding	4.98764409451543	5.02333829162136	4.95343653359428	4.97225970753996	4.90239807260021	5.09145901617663	5.09452544085757	5.05236073026232	0.0911037375502845	0.766137826150839	0.908503528989431
Merged-chr3-51234626-4	chr3	51234514	51234714	+	855.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009834, intron 1 of 2)	intron (NM_009834, intron 1 of 2)	10167.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	4.44803557797884	4.28333442506441	3.6768628025252	4.01222319047822	4.44647321410652	4.03935057996591	4.0050160567155	4.11690862789698	0.100462700950449	0.829024553343951	0.934333879868872
Merged-chr5-147564375-4	chr5	147564264	147564464	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010228, exon 30 of 30)	exon (NM_010228, exon 30 of 30)	134208.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	4.95395867744028	5.36646735969201	4.83245863282392	4.8491711727803	5.54239937960132	5.05605706920455	5.71403172161173	5.60752312639434	0.890432950298391	0.00664939711196646	0.0585836659280432
Merged-chr14-75181236-2	chr14	75181136	75181336	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	44811.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	3.22189107345271	3.00524995163714	3.16547391121208	3.02410147738382	3.48081962586888	3.01720404286316	3.20971125826448	3.0422695844827	0.422345614881325	0.464811043770556	0.745589428145861
Merged-chr11-70608777-3	chr11	70608669	70608869	+	812.133362	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045964, intron 18 of 32)	intron (NM_001045964, intron 18 of 32)	-7125.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	2.9980115714551	2.84932768146173	3.285928620993	2.95712907568146	3.15713293095089	3.17171724549893	3.16592633145526	3.11953573523907	0.510927919382888	0.372252115548402	0.676099595682082
Merged-chr1-4870704-4	chr1	4870625	4870825	+	834.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159750, intron 2 of 9)	MTD|LTR|ERVL-MaLR	12397.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	3.97216326540444	3.95692213385833	3.86352490061744	4.17722511920647	4.33640025907128	4.09568401978489	4.27580633764301	4.37162634450829	0.665526938008454	0.109493975406172	0.365316943631569
Merged-chr3-20057759-4	chr3	20057667	20057867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009210)	promoter-TSS (NM_009210)	-44.0	NM_009210	20585.0	Mm.209650	NM_009210	ENSMUSG00000002428	Hltf	AF010600|BC057116|P113|Smarca3|Snf2l3	helicase-like transcription factor	protein-coding	7.88014478160765	7.70667788954609	7.56801868836856	7.89087770135469	8.10855069067409	7.87041813436484	8.11671922492742	7.89064462282203	0.299906047968098	0.0867381540220068	0.321209032577518
Merged-chr7-83568297-4	chr7	83568211	83568411	+	854.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16620.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	3.5075132667319	3.94214592257971	3.76091998838102	3.93766606282785	4.08153818249163	4.04706395978454	4.09506073231584	4.4549380902263	0.979739785052752	0.0335197642996531	0.180231402257517
Merged-chr1-55131157-4	chr1	55131071	55131271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025283)	promoter-TSS (NM_025283)	-74.0	NM_001310585	19070.0	Mm.291037	NM_025283	ENSMUSG00000025979	Mob4	2610109B12Rik|Mobkl3|Phocn|Prei3	MOB family member 4, phocein	protein-coding	8.03543090044264	8.00104980348306	7.92670996326466	8.02407817016713	8.11272214468209	8.14663736037308	8.04982753332176	7.78482510952984	0.0437825891851038	0.791062810659728	0.918932146915872
Merged-chr1-133660852-2	chr1	133660738	133660938	+	687.583374	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001166552)	promoter-TSS (NM_001166552)	47.0	NM_001166552	667118.0	Mm.245357	NM_001166552	ENSMUSG00000102049	Zbed6	Gm8466|MGR	zinc finger, BED type containing 6	protein-coding	4.29446521568281	4.18820644587079	4.11350259451511	3.94844982348616	4.0623826735764	4.23923176402907	4.18886647299373	4.52335695737755	0.324237189228556	0.431939744499277	0.722036567335526
Merged-chr9-103234727-4	chr9	103234618	103234818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4432.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	6.54759520359284	6.4376446664717	6.68650457492327	6.83156868761873	6.21948308205593	6.81788056868613	6.16485853871829	6.65242382191585	-0.229092264546227	0.359480447782106	0.665369741852573
Merged-chr2-39005905-2	chr2	39005805	39006005	+	759.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025592)	promoter-TSS (NM_025592)	-774.0	NM_025592	66489.0	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	3.03441218826802	2.81647438463415	2.86823694380083	2.55230814210968	2.68814695352354	2.71232279751507	2.85710073212512	2.60534260091246	-0.491790403688555	0.462606383059869	0.744149240430708
Merged-chr10-78092851-3	chr10	78092725	78092925	+	888.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23457.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	3.32785733667196	3.10021868916581	2.85291456411513	2.93743010242272	3.59047993923593	3.38561692886973	3.31496442354404	3.75908291523899	1.69452951763705	0.00302999932412889	0.0322308003296237
Merged-chr1-151820722-3	chr1	151820638	151820838	+	883.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001311166, exon 20 of 20)	3' UTR (NM_001311166, exon 20 of 20)	65364.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	3.31598909251058	3.37699325220918	3.31643119856837	3.33221321286448	3.31485950477661	3.11541169506639	3.19038950778004	3.19998121397033	-0.459588664365059	0.39092309811592	0.690867352703316
Merged-chr7-123368601-10	chr7	123368520	123368720	+	925.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	1295.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	3.30778851621828	3.34993652959465	3.11099098125382	3.24609138811006	3.86345542877499	3.35881868888747	3.41174316931114	3.67576372019022	1.16460187677291	0.0279597851760077	0.159977987101765
Merged-chr17-33920902-4	chr17	33920808	33921008	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025313, intron 3 of 7)	intron (NM_001025313, intron 3 of 7)	1430.0	NM_009318	21356.0	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	4.41090834357852	4.93842352624633	4.36271098249045	4.6539795471691	5.06204063327736	4.88325684921372	4.83101181103279	4.40889376861321	0.430008533216391	0.265745224515734	0.577430836308854
Merged-chr3-30864853-4	chr3	30864763	30864963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286994, intron 1 of 3)	intron (NM_001286994, intron 1 of 3)	8913.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	7.89499895991414	7.7694729756288	7.94505076215486	8.12776207762634	7.59278389246415	7.48732572090482	7.73161149725552	7.77192716197006	-0.38814212987539	0.0288732234405537	0.163276966018525
Merged-chr11-51921569-4	chr11	51921472	51921672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46059.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	7.13191111861808	7.34513561322731	6.85228921102533	7.10483134489188	7.12897800717993	7.04392201852552	7.16388182874766	6.91695166154739	-0.0735174497214966	0.713648672823531	0.885468561919243
Merged-chr11-121340496-4	chr11	121340420	121340620	+	857.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025793, intron 3 of 9)	intron (NM_025793, intron 3 of 9)	13927.0	NM_025793	66840.0	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	4.28633741047384	4.28338821576554	4.445932070272	4.05354162774813	4.10547725921907	3.69411499328909	4.18074808468861	4.40512896725229	-0.361531177942501	0.415755177844496	0.709886482687489
Merged-chr3-127496758-1	chr3	127496658	127496858	+	844.0	f0_c57.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	2357.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	2.42705864703982	2.37621842893022	2.51082497067089	2.21489219201987	3.27777460588782	3.04698169876198	3.23328884676193	2.98766133813521	4.62135846797353	7.13289039913972e-09	3.91451045273991e-07
Merged-chr3-75297192-4	chr3	75297074	75297274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27096.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	6.64830886674598	6.4758134029976	6.27108347448288	6.44139960363602	6.27095074432875	6.46627107080391	5.88937260986494	6.32288582964045	-0.316749458530342	0.184967303119687	0.48270532241086
Merged-chr3-142620159-4	chr3	142620071	142620271	+	800.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010260)	promoter-TSS (NM_010260)	-492.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	4.23356732812812	3.65284126617734	3.68311055392851	4.09141257698528	3.8655176045846	3.68031489985719	3.8780909703637	3.79101577912525	-0.38675397053142	0.419084539427821	0.712251159515261
Merged-chr6-72163344-4	chr6	72163277	72163477	+	955.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40180.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	4.51584870815874	4.60789096310233	4.75597590079774	5.33550077230638	4.05785036727905	4.60529300093395	4.25899545539827	4.98455499434518	-0.710560130799633	0.117543671963461	0.37922032519485
Merged-chr4-101647440-4	chr4	101647381	101647581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175036)	promoter-TSS (NM_175036)	-302.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	9.32221810530103	9.62545091179777	9.52901600219893	9.49816890104868	9.39122392223271	9.58041867825406	9.53661665321308	9.20262632283459	-0.0783621130893627	0.612335493983348	0.832715671052909
Merged-chr2-5710137-3	chr2	5710026	5710226	+	696.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	4636.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	4.44734621421045	4.18155178116355	4.10393764798789	4.02904370783237	3.95382858731335	3.75015480056154	3.67862929218345	3.56421034964998	-1.22716986452675	0.00976197003436708	0.0776056908400255
Merged-chr2-34943912-4	chr2	34943809	34944009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001326601, exon 10 of 10)	exon (NM_001326601, exon 10 of 10)	17863.0	NM_009421	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	5.96319435486306	5.90965071086382	5.91933068717805	6.49314623281744	6.0360795505009	5.63736720867917	6.0185732866057	5.71780851028201	-0.386461702766347	0.173531289000328	0.467581910161457
Merged-chr12-81755799-2	chr12	81755699	81755899	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001174107, intron 2 of 10)	intron (NM_001174107, intron 2 of 10)	25371.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	3.73767242004703	4.26485644703397	3.68590208595254	2.8745278226291	3.72265977451542	3.96243401917406	3.44028621364438	3.31888663041099	-0.327104236956477	0.615531941706613	0.834477192020031
Merged-chr14-55147944-1	chr14	55147844	55148044	+	541.0	f0_balb.idr	Intergenic	Intergenic	-31009.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	3.32754380698585	3.10328198675018	3.22027953063634	3.14172309609315	2.96315900602943	3.01289176750071	2.89578507852274	3.47181523529789	-0.361651567987585	0.54654673362714	0.796426402355639
Merged-chr2-167367983-4	chr2	167367878	167368078	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18800.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	4.90703126321049	4.98872813583803	4.80220041785312	4.86787774536449	4.86945622436492	4.64748080263407	4.49544946569111	4.76179815521091	-0.377508967445014	0.265159882459034	0.576956662317123
Merged-chr4-129746146-6	chr4	129746009	129746209	+	871.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3806.0	NR_045036	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	3.71827782893029	3.12196633164234	3.51918323259358	3.16771107857436	3.536654015996	3.46170270331602	3.65546882008003	3.56999579966953	0.546192922573304	0.311346421109111	0.623367188212018
Merged-chr11-17001137-4	chr11	17001036	17001236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	RMER19C|LTR|ERVK	7582.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	6.80212378198762	6.60606314529102	6.81675551323116	6.79162382640193	6.69927852366922	6.60545338495323	6.53249925256515	6.32911074337871	-0.289756189722119	0.169950597493361	0.462898005547772
Merged-chr8-47533564-4	chr8	47533457	47533657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177240)	promoter-TSS (NM_177240)	-87.0	NM_177240	320714.0	Mm.39461	NM_177240	ENSMUSG00000038102	Trappc11	AW558465|D030016E14Rik|R75422	trafficking protein particle complex 11	protein-coding	8.90218836725139	8.76166029158193	8.95802468698161	9.03320006064044	8.73529695587639	8.55304820077879	8.8673536081139	8.59736151562028	-0.279388170909312	0.0736371532969353	0.29234307181229
Merged-chr11-8574745-4	chr11	8574647	8574847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	89788.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	6.57544299142	6.71884396214577	6.60806092811747	6.7674198533002	6.42461823293601	6.46962189339897	6.54304488874741	6.53966666057328	-0.271016315360359	0.18760549723697	0.486046220470858
Merged-chr12-52850530-4	chr12	52850437	52850637	+	925.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198111, intron 2 of 13)	intron (NM_198111, intron 2 of 13)	151154.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	4.53997017718144	4.57381057718427	4.58438363458876	4.82857507278091	5.11922432726205	4.67320918790893	4.96220908880028	4.78002205251037	0.519635788725612	0.139687296776843	0.41561685813982
Merged-chr10-93577694-4	chr10	93577577	93577777	+	944.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175488, intron 13 of 15)	intron (NM_175488, intron 13 of 15)	-11736.0	NR_045810	74454.0	Mm.410794	NR_045810	ENSMUSG00000097407	4933408J17Rik	-	RIKEN cDNA 4933408J17 gene	ncRNA	4.5940499656752	4.66698108800331	4.49934854654145	4.98688544662539	5.18574012044379	5.32056817133628	5.29043650413196	5.01991280438712	0.935069544888443	0.00701394955617794	0.0609579872355542
Merged-chr8-72144556-4	chr8	72144450	72144650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001491, intron 3 of 7)	intron (NM_001001491, intron 3 of 7)	9258.0	NM_001001491	326618.0	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	5.38082405921288	5.65259331224878	5.46919574888942	5.53096843457957	5.3763779647504	5.49611378456041	5.73919096125719	5.28426801599417	-0.0600504002254254	0.831204044319339	0.935322338382222
Merged-chr9-50768350-4	chr9	50768239	50768439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361107)	promoter-TSS (NM_001361107)	101.0	NM_198675	382137.0	Mm.390169	NM_198675	ENSMUSG00000037845	Fdxacb1	D630004A14Rik	ferredoxin-fold anticodon binding domain containing 1	protein-coding	6.62602911435609	7.37889242291538	7.17337763172684	6.52247521539598	6.87153087723248	7.26033827946412	6.65804177119272	7.13552697714093	0.0395015147369169	0.883187580452953	0.956033847067461
Merged-chr1-163930004-4	chr1	163929904	163930104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028776, exon 1 of 14)	5' UTR (NM_028776, exon 1 of 14)	239.0	NM_028776	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	5.45288438083545	5.64196213137912	5.92202944860428	5.78755272376604	5.83790656968151	6.07393953918506	5.70576734370829	5.98132806707262	0.300494948484498	0.254822228031068	0.566310450490533
Merged-chr19-42026355-4	chr19	42026255	42026455	+	936.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	-9683.0	NM_020033	56642.0	Mm.143737	NM_020033	ENSMUSG00000025172	Ankrd2	Arpp|mArpp	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding	4.47146675158273	4.62435644486658	4.67098194099986	4.60239839455263	4.71742358978527	4.46479932924516	4.49401635556799	4.4256673963596	-0.119939317840727	0.737850803025693	0.896555867875472
Merged-chr9-40803998-4	chr9	40803887	40804087	+	946.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031165, intron 6 of 8)	intron (NM_031165, intron 6 of 8)	2714.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.65357443851287	4.3802585235242	4.69095569488002	4.24601822565711	4.70306211727057	4.6697240786583	4.66841796132442	4.21338502630896	0.205887558436086	0.596757858908348	0.824946763915719
Merged-chr5-144223155-1	chr5	144223055	144223255	+	1000.0	f1_c57bl6.idr	intron (NM_027410, intron 1 of 24)	intron (NM_027410, intron 1 of 24)	460.0	NM_001356992	70381.0	Mm.239412	NM_027410	ENSMUSG00000066621	Tecpr1	2210010N04Rik|mKIAA1358	tectonin beta-propeller repeat containing 1	protein-coding	2.63572502538599	2.64928126315638	2.63606645748434	2.30248653285608	2.36572094078162	2.53780390302359	2.6866114094277	2.63468558597754	0.00816272946914811	0.990843617961848	0.996443265416386
Merged-chr4-95161453-4	chr4	95161354	95161554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-109232.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	7.78975441418017	7.71954586109492	7.76735657871845	7.91239909086229	7.95673765022268	7.99931376281781	8.08693320983548	7.80905223002235	0.209802349110997	0.204816735311825	0.508303420479077
Merged-chr19-8989322-3	chr19	8989211	8989411	+	893.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286518)	promoter-TSS (NM_001286518)	27.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	3.80094149404376	3.51931744032943	3.65291655241083	3.73454530426327	3.54629719769533	3.65868903884237	3.63834586021412	3.70238193242507	-0.154712497279279	0.742622696286448	0.89853940009025
Merged-chr4-116807670-4	chr4	116807572	116807772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133250)	promoter-TSS (NM_133250)	-62.0	NM_133250	70603.0	Mm.180333	NM_133250	ENSMUSG00000028687	Mutyh	5730495A01Rik|Mutyha|Mutyhalpha|Mutyhb|Mutyhbeta|Mutyhc|Myh	mutY DNA glycosylase	protein-coding	8.09402936586273	8.485818044575	7.94068330629521	8.30028075029048	8.37295442640047	8.49659816470881	8.65352375084801	8.2797360328325	0.291770823048244	0.114664141986928	0.374533599886066
Merged-chr10-23851430-3	chr10	23851327	23851527	+	971.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011979)	promoter-TSS (NM_011979)	-35.0	NM_011979	26464.0	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	3.5258277748124	3.48141265213401	3.86405631316068	3.88951484535975	4.80144614659445	3.99395406291462	5.11855534797415	4.5895036366335	2.3826441958385	6.03495303484191e-06	0.000175402989819115
Merged-chr5-136007999-3	chr5	136007879	136008079	+	935.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256096, intron 2 of 10)	ZP3AR|Satellite|Satellite	13179.0	NM_001256098	74198.0	Mm.275574	NM_023742	ENSMUSG00000004947	Dtx2	2610524D08Rik|AA408415|AU022494|Deltex2	deltex 2, E3 ubiquitin ligase	protein-coding	4.15829026179849	3.50531975233562	4.19705011323238	4.54493134196953	3.332172171782	3.43949424785335	3.44522125420729	3.16585845197871	-2.63765250897	1.32096952469332e-05	0.000354411194112874
Merged-chr4-59043191-3	chr4	59043070	59043270	+	703.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8014.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	3.29821893870528	3.07697534966008	3.14265305083581	3.18949415016912	3.06337475141342	2.86383922099739	2.95486075413331	2.75767560907865	-1.08966789015981	0.0771632180472355	0.300367540763609
Merged-chr17-81015990-4	chr17	81015945	81016145	+	842.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49040.0	NM_028138	72167.0	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	3.66262709467036	3.67954461108456	3.77290352613394	3.78814566259512	3.96612086173556	3.94457158991079	3.95045966805844	3.87186923783281	0.580447613739691	0.183658988695897	0.480761104819123
Merged-chr6-65126290-3	chr6	65126198	65126398	+	646.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 4 of 5)	intron (NM_019455, intron 4 of 5)	18432.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	3.32331053236305	3.36430042520063	3.3823376629808	3.51955263743163	3.63536680273083	3.49517964420886	3.3699091598443	3.38059964677256	0.245164275368184	0.63097273676875	0.843124386449892
Merged-chr9-40264090-3	chr9	40263989	40264189	+	696.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5127.0	NM_001083917	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	2.78235799627568	2.90230442405686	2.99838267884795	2.65472214492181	3.59079513314851	3.465965202722	3.28140823586293	3.06185409555431	2.21856195512167	0.000232576995795505	0.00411498831313155
Merged-chr18-75469245-3	chr18	75469158	75469358	+	912.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 10 of 11)	ORR1F|LTR|ERVL-MaLR	-45387.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	4.42018324104758	4.19467850896058	4.53800936434458	4.78990267249044	3.87572975381761	4.05418649486112	4.4004177837479	4.37650991629351	-0.783814888964399	0.070182932079712	0.283660832576334
Merged-chr3-98015989-4	chr3	98015885	98016085	+	862.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	2447.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	4.28111730787852	4.32814009256934	4.32568095215203	4.57830075542227	4.29612224101273	4.16027678142852	4.26299168711314	4.27914124063453	-0.351945604841427	0.36579613116664	0.670417458102074
Merged-chr9-90243134-4	chr9	90243047	90243247	+	810.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 2 of 12)	intron (NM_194334, intron 2 of 12)	27622.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	4.94412680821121	4.65764044718465	5.06867759279468	5.45768366039811	4.61861196085539	4.29681783856653	4.50484690028733	4.32917376944279	-1.32520312865092	0.000788910863130015	0.0111151793995905
Merged-chr9-44320871-4	chr9	44320756	44320956	+	963.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027909)	promoter-TSS (NM_027909)	-574.0	NM_027909	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	4.60849260704092	4.54615246453343	4.25062852479963	4.66368100903188	4.71314492551271	4.61679289573266	4.54848307567826	4.71833624879053	0.250154997143032	0.487732633663821	0.761057402147961
Merged-chr15-62071490-4	chr15	62071417	62071617	+	929.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	32260.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	4.91037709525249	4.65732046588191	4.3373926726736	4.36724156863303	4.47202353808427	4.69103250511881	4.65291438183565	4.42769169692556	-0.0360460451772246	0.924786310119097	0.972223507044681
Merged-chr11-4849582-4	chr11	4849472	4849672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361676)	promoter-TSS (NM_001361676)	-28.0	NM_010898	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	8.63889588415453	8.55954968040234	8.53374302389506	8.47500898705046	8.63262887184623	8.70175813955087	8.68631384252881	8.44339160426776	0.0879427857135929	0.558080271343745	0.802983538184281
Merged-chr2-127337415-6	chr2	127337354	127337554	+	731.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010090, exon 3 of 4)	exon (NM_010090, exon 3 of 4)	-1185.0	NM_172539	215095.0	Mm.31313	NM_172539	ENSMUSG00000050468	Astl	7420700F21|C87576|Sas1b	astacin-like metalloendopeptidase (M12 family)	protein-coding	3.44439782286376	3.73124170276373	3.20018622175711	3.18640808947127	3.54483769539954	3.56049305983694	3.37511398664394	3.49753851688938	0.310153046371522	0.562620631112212	0.805719838254776
Merged-chr14-55591097-4	chr14	55591006	55591206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011190)	promoter-TSS (NM_011190)	-5.0	NM_001029855	19188.0	Mm.371573	NM_011190	ENSMUSG00000079197	Psme2	AA589371|AI788882|PA28b	proteasome (prosome, macropain) activator subunit 2 (PA28 beta)	protein-coding	8.52706124401648	8.6364356193898	8.50898420340102	8.37912664300802	8.59769658644617	8.5358922802213	8.68858032588922	8.41221727300513	0.0646680038222401	0.677112307970809	0.86743056349761
Merged-chr10-96343431-4	chr10	96343335	96343535	+	870.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	117228.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	3.96824338422702	3.77236784938817	4.67248142633109	4.51189431407972	4.14691489125225	3.91575734436373	4.32832662712202	4.38611354351354	-0.198972316838604	0.680045420651839	0.868593041138696
Merged-chr1-155070643-4	chr1	155070528	155070728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	12636.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	6.96432854346802	6.67457319842777	6.99031997216389	7.02633377677186	6.83370434849545	6.69787861968803	6.96716421439959	6.88325649911465	-0.105364998470771	0.603473289051681	0.828120787380174
Merged-chr3-37769513-4	chr3	37769400	37769600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45140.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	8.56235399028288	8.66123848374649	8.61509432013461	8.57376364812158	8.71302112549258	8.80648350906322	8.66388276020722	8.66772687393886	0.138481001259019	0.32866365537748	0.640138323335519
Merged-chr8-41025795-4	chr8	41025714	41025914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 5 of 13)	MTC|LTR|ERVL-MaLR	8346.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	4.36918901355567	3.92194705781311	4.66398210999742	4.98291132849335	5.12157210314794	5.28360375012977	5.66860146907663	5.33409957046295	1.55750777771891	0.000453882246669044	0.00713355023259525
Merged-chr13-23769219-4	chr13	23769130	23769330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5562.0	NM_030609	80838.0	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding	6.02843871535113	5.68445277880636	5.44601348181385	6.03587080644362	5.74605897202691	5.74684205055928	6.05777959499264	6.12278798033333	0.147305448520826	0.601283091694593	0.827071740947179
Merged-chr18-75697641-4	chr18	75697534	75697734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201354)	promoter-TSS (NM_201354)	62.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	6.48151427484438	6.44099816783913	7.09761646074837	6.60583025892674	6.47720933586104	6.37210318956819	6.64037940580964	6.669686636326	-0.193755932517785	0.421151227912796	0.713771969129928
Merged-chr9-72532070-10	chr9	72532054	72532254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045735)	promoter-TSS (NR_045735)	-86.0	NM_001033536	319758.0	Mm.32081	NM_001033536	ENSMUSG00000037674	Rfx7	2510005N23Rik|9930116O05Rik|D130086K05Rik|Rfxdc2	regulatory factor X, 7	protein-coding	4.90997832539783	4.89096935756023	4.51540509481873	4.50461082713021	5.09993664969321	4.86369448401204	5.07434514470904	4.51260715020932	0.419451023544334	0.250953349541036	0.562197505562515
Merged-chr16-50373821-2	chr16	50373721	50373921	+	860.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	58568.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	3.15810773307864	3.26386147395189	3.15846383735151	3.46120142341055	3.43949204244624	3.33014921462195	3.26640107434703	3.27674850187251	0.190320434165495	0.726266206485196	0.891034932051019
Merged-chr9-99072718-4	chr9	99072632	99072832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 9 of 23)	intron (NM_029094, intron 9 of 23)	-37042.0	NM_001080776	382097.0	Mm.293727	NM_001080776	ENSMUSG00000044860	Gm1123	AV052824|CLSP	predicted gene 1123	protein-coding	5.70703619821614	5.28920543791348	5.48771501701619	5.83885974366752	5.71378721953624	5.88316650703375	5.96931451038037	5.99581075653844	0.451795053100374	0.105317707085914	0.357107901708664
Merged-chr12-81735940-2	chr12	81735840	81736040	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001174107, intron 3 of 10)	intron (NM_001174107, intron 3 of 10)	45230.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	3.16372097851438	3.42980298062388	3.09390490964845	3.20437059484161	3.2781891574312	3.69318137834822	3.86478987343961	3.46718854473148	1.21909645132338	0.0262109387119329	0.153378400577469
Merged-chr16-90694938-3	chr16	90694839	90695039	+	854.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32432.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	3.76919701727864	3.29911908920504	3.58009901951009	3.40556899386993	3.78461600940236	3.27301984696162	3.51360096190854	3.22822667722121	-0.133344503336074	0.810609861232188	0.926854276252049
Merged-chr13-36132249-5	chr13	36132239	36132439	+	935.339417	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 1 of 5)	intron (NM_001039189, intron 1 of 5)	14696.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	3.65291412275422	3.60818014305207	3.54208190927687	3.49108241841485	3.73850920381769	3.92497085360305	3.40886415284072	3.89325567951898	0.56948552453297	0.238219437118095	0.548620743347101
Merged-chr11-55005161-4	chr11	55005084	55005284	+	905.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001110211, exon 9 of 25)	exon (NM_001110211, exon 9 of 25)	28287.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	4.52775120288916	4.39588955025985	3.92417072047304	4.37105769131052	4.5532444933865	4.36511181500504	4.12430043597218	4.28131304458266	0.0508762000018738	0.902328120874311	0.963744328972473
Merged-chr10-59269026-4	chr10	59268921	59269121	+	749.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	47099.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	3.45317546974685	3.11763270587187	3.61033233483641	3.37741778673777	3.6283332335396	3.45118091045572	3.44021151738871	3.55813859194145	0.430980876333141	0.405609104890496	0.702341680428793
Merged-chr12-44273659-3	chr12	44273557	44273757	+	838.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026164, intron 1 of 9)	intron (NM_026164, intron 1 of 9)	4503.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	3.18598525153879	3.44042752826661	3.35466700183953	3.28139137260217	3.32848371744218	3.23395558465419	3.05207416687827	3.12369845002749	-0.468703718180503	0.396024226440639	0.6950249619634
Merged-chr16-45158770-4	chr16	45158706	45158906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356453)	promoter-TSS (NM_001356453)	-23.0	NM_001356366	67841.0	Mm.41775	NM_026402	ENSMUSG00000022663	Atg3	2610016C12Rik|APG3|Apg3l|Atg3l|PC3-96	autophagy related 3	protein-coding	8.75804391557409	8.8104903343312	8.78417315509001	8.82958042431097	8.88028737598652	8.7628854278647	8.83494452804544	8.79889184848601	0.0304758694598191	0.82499631875428	0.932930565831813
Merged-chr10-19562823-3	chr10	19562718	19562918	+	846.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29131.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	3.35488726178367	3.34704648594508	4.01210933358566	3.47790518271232	3.39849114600585	3.27061311334162	3.5130730378481	3.47062473256099	-0.518916941552712	0.343898209358685	0.652495167197173
Merged-chr14-73403556-3	chr14	73403456	73403656	+	677.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-18267.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	3.89894622458271	3.78860748897872	3.84915859691571	3.85705705316211	3.57672782845516	3.61696016524634	4.39612976871352	3.94557879187028	0.215506770577192	0.663219446474463	0.860454250420379
Merged-chr13-101879906-4	chr13	101879799	101879999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111682.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	6.81092173605583	6.90620636094548	7.54689642752107	6.62024586925929	6.85911958450314	7.34471005778945	7.23768565301876	7.07124426446742	0.170916954543047	0.507322999943921	0.772710503440438
Merged-chr6-112739213-4	chr6	112739134	112739334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 16 of 21)	intron (NM_080448, intron 16 of 21)	-42564.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	5.79939802382427	5.99373480442986	5.87352887543794	6.39805518281187	5.94764811255201	5.84640669524353	5.86700411336452	5.98245027962269	-0.235970192112365	0.37915703435433	0.681731129295467
Merged-chr14-70057453-1	chr14	70057353	70057553	+	1000.0	f0_c57.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-19992.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	7.02773381138669	7.57460615280948	7.30420949046059	6.7476606771205	7.33225549533188	7.58931850587982	7.21533908567008	7.07424775405884	0.165588010679881	0.493325486978408	0.76412898854184
Merged-chr5-23850583-4	chr5	23850538	23850738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045040)	promoter-TSS (NR_045040)	41.0	NR_045040	67194.0	Mm.423733	NR_045040	ENSMUSG00000097180	2700038G22Rik	-	RIKEN cDNA 2700038G22 gene	ncRNA	6.80414516639678	6.45580628354241	6.69914546872752	6.91496084837761	7.44430039010936	7.36704192603985	7.10013022602047	7.02620768676446	0.707493505520065	0.00109283824318328	0.0144344281520769
Merged-chr9-64811975-1	chr9	64811875	64812075	+	1000.0	f0_balb.idr	intron (NM_001162917, intron 2 of 34)	CpG-15087	964.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	5.0023177415379	4.60659092935276	5.25156680371639	4.2485158876886	5.19952208912067	5.10887853527858	4.94407076835877	5.40624048354119	0.695798668110139	0.0736870457509925	0.292404800462024
Merged-chr1-131087066-4	chr1	131086974	131087174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	10769.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	7.00342060135159	6.96016597773402	7.0904977869851	7.19984089019153	7.15267747030619	6.94575067154207	7.13494215515967	7.31207176267504	0.0962787903719998	0.618268876293868	0.835950162330393
Merged-chr6-34955694-4	chr6	34955600	34955800	+	861.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025573, intron 5 of 7)	intron (NM_001025573, intron 5 of 7)	22299.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	4.02271647373678	4.26695767720968	4.30449100781634	4.12458720037669	4.12226269376694	4.3886396299947	4.15343580118295	4.30175330861532	0.147625989804894	0.710634708945904	0.884197177759025
Merged-chr9-106821840-4	chr9	106821735	106821935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001015507)	promoter-TSS (NM_001015507)	-141.0	NM_001015507	321006.0	Mm.440089	NM_001015507	ENSMUSG00000040325	Dcaf1	AI447437|B930007L02Rik|Vprbp|mKIAA0800	DDB1 and CUL4 associated factor 1	protein-coding	8.08350699703695	8.24376943989097	7.9965122348714	7.90413444935175	8.39642292284718	8.60976767196513	8.25662404578538	8.28458156177031	0.42624645907521	0.012891084510991	0.0944960090171883
Merged-chr8-125726841-5	chr8	125726862	125727062	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-7241.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	4.18968503282005	4.05859465877946	4.04600895123137	3.90644673822301	4.04643109621157	4.27040690525164	4.58890002794555	4.23238662592466	0.632686996810465	0.12765569267769	0.397550076527182
Merged-chr11-59392515-4	chr11	59392409	59392609	+	965.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16856.0	NM_001045521	216797.0	Mm.339586	NM_001045521	ENSMUSG00000049291	Prss38	Gm249|Mpn2	protease, serine 38	protein-coding	5.80531129208429	5.69985992672702	5.92028172330983	5.99791861173836	6.16200283578978	5.10589168282175	5.65233552478941	6.02040993588413	-0.0897221054068672	0.77796136717211	0.913484421616054
Merged-chr1-91027126-4	chr1	91027031	91027231	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	ORR1D2|LTR|ERVL-MaLR	-26313.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	5.2771603526746	5.90979664520753	5.02042720947744	5.34616821805633	5.74300854484469	5.52090479990832	5.67227965275534	5.87568716225331	0.467696719033089	0.138818935765359	0.414381792154761
Merged-chr11-79088506-1	chr11	79088406	79088606	+	1000.0	f0_c57.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-28670.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	4.82373106791576	4.40262478167172	5.32280820240663	4.88925173447809	4.70820418723139	4.62429023047939	4.872463933451	5.02419845044068	-0.169458586493477	0.658551427020258	0.857904281262009
Merged-chr9-104263067-4	chr9	104262975	104263175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163026)	promoter-TSS (NM_001163026)	-145.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	8.80910375482102	9.11947950421335	8.71234533976217	8.49813550793417	9.24066610754282	9.37114396777125	9.14317452685919	8.93342295001281	0.471777177521424	0.0111216664544059	0.0851034334027311
Merged-chr9-101078743-2	chr9	101078643	101078843	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100451, intron 1 of 1)	intron (NM_001100451, intron 1 of 1)	3981.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	2.75176062236877	2.98224330322278	2.68237663778074	2.6844135877233	2.86326113441947	2.92583351880996	2.98684107778814	2.99721788422001	0.739126565630453	0.226633908984664	0.53525698479061
Merged-chr15-53196520-4	chr15	53196413	53196613	+	943.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	149670.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	4.70986906601985	5.31244724380452	5.09248889399929	4.74020277555828	4.64785545374272	4.88648060828993	4.68869644943204	4.6241307496252	-0.552931528757169	0.125087639051644	0.392542105217475
Merged-chr14-21832238-4	chr14	21832116	21832316	+	985.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011695, intron 2 of 9)	intron (NM_011695, intron 2 of 9)	655.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	4.8380378316104	4.80589755875645	5.39977818433882	4.98249617471607	5.43800781106385	5.34014130575271	5.44940091776918	5.06240639689786	0.579601602813117	0.0728022178683294	0.290267145588365
Merged-chr11-69628490-4	chr11	69628389	69628589	+	888.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21B|LTR|ERVL	-4482.0	NM_011814	23879.0	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	4.19137156533695	4.47523066780803	4.14405494225137	3.8862066503251	4.18835676660326	4.53800327361827	4.38745154113737	4.14156814089146	0.338896962434105	0.42265773978564	0.714864443974006
Merged-chr5-148700414-4	chr5	148700328	148700528	+	883.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41412.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	3.96230358302777	4.28780469425148	4.27383979309627	4.08035123810719	5.32876984297017	5.10764041327773	5.45288849720286	5.56418286234099	2.51043253691397	1.57838104004886e-12	1.63295907048893e-10
Merged-chr6-140614892-4	chr6	140614798	140614998	+	900.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7765.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	4.42041932990305	4.58805139778606	4.27984290648049	4.60019335441255	4.89946555143204	4.59530434801967	4.48692031309432	4.50453400131014	0.339428401334075	0.364050553778181	0.668959979169087
Merged-chr5-147072042-3	chr5	147071935	147072135	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	4537.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	6.46949256965429	6.14817884426743	6.43064645813685	6.45841092001126	3.8188563998579	4.38630442115295	4.67916287548616	4.23510702293226	-4.36816227778169	3.30651675291495e-25	2.12031131491652e-22
Merged-chr9-94617350-4	chr9	94617265	94617465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52527.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	6.2245680560657	5.9462050959556	6.05508471937578	5.75624045660055	5.732418941033	6.18815868659574	5.75483848483438	5.72876565324762	-0.213634154087054	0.427940146877456	0.719041213150412
Merged-chr16-95825318-4	chr16	95825201	95825401	+	927.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73412.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	4.63229559468941	4.25144206528843	4.51984960078046	4.59992025938678	4.13694608516783	4.52533104738426	4.14028491126074	4.62995310383499	-0.330555860890257	0.40938788405243	0.704986157609834
Merged-chr8-10858080-4	chr8	10857982	10858182	+	981.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24372.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	5.28250030188119	5.14918636475401	5.05096349396149	5.70137834665004	5.35928494514559	5.48660883688862	5.22675926485504	4.97278124536773	-0.122079419039386	0.714273251599801	0.885751594550815
Merged-chr5-16326853-1	chr5	16326753	16326953	+	686.0	f0_balb.idr	intron (NM_001110843, intron 20 of 38)	intron (NM_001110843, intron 20 of 38)	-226642.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	3.339737649953	3.21858644680313	3.8073632471735	3.32065740043086	3.07093334809582	2.98175764431596	3.26999974225067	3.39354998386914	-0.914935967330304	0.122152207957348	0.387327089801111
Merged-chr9-120868591-3	chr9	120868488	120868688	+	936.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46662.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	4.06616416159631	3.81571972925272	3.85030400549729	3.9709207154254	3.42408537982917	3.44987706321209	3.51712164181212	3.69782436158793	-1.28411484222132	0.00833053144132469	0.0690852729187988
Merged-chr17-48346441-4	chr17	48346349	48346549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001272078)	promoter-TSS (NM_001272078)	48.0	NM_001272078	83433.0	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	5.14017801874343	5.23394456245622	5.2377430572239	5.61193140777971	5.27684971565122	5.10117817702762	5.08244654590141	5.29467121347144	-0.264537320209228	0.394245482118888	0.693385366601773
Merged-chr11-3182575-2	chr11	3182496	3182696	+	995.125	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 4 of 32)	MTD|LTR|ERVL-MaLR	10867.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	4.48348668553025	3.71267519799399	4.6209636639518	4.02657921943957	2.85392128394761	3.10449830623785	3.05856550968527	3.0661155822322	-7.10018889033907	1.74924539583927e-10	1.28492815304895e-08
Merged-chr3-108070507-4	chr3	108070402	108070602	+	843.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14900.0	NM_001346665	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	3.67789996981923	3.8783639731868	3.67836151164406	3.87891143124492	4.07979815715901	3.96848390014619	4.11179060741991	4.24878100474284	0.851168243020477	0.0505655425526003	0.233229960688928
Merged-chr4-145037795-4	chr4	145037683	145037883	+	877.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 65 of 69)	intron (NM_001276465, intron 65 of 69)	144646.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	4.34370032510029	4.16493066346872	4.85959350808872	4.94894597442213	4.04344472627119	4.10775548628278	4.41170055494621	4.47087848477557	-0.839530363264033	0.0568702198069495	0.249812723749621
Merged-chr1-180904900-4	chr1	180904810	180905010	+	758.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133705, intron 2 of 6)	intron (NM_133705, intron 2 of 6)	636.0	NM_133705	69051.0	Mm.274180	NM_133705	ENSMUSG00000026520	Pycr2	1810018M05Rik|P5cr2	pyrroline-5-carboxylate reductase family, member 2	protein-coding	4.08985862735373	3.925122490155	4.09048026923309	4.1747550373446	3.87989878401173	3.7867187998381	4.11623508034301	4.04219236679978	-0.31845279927631	0.457436519020466	0.740518865276849
Merged-chr1-135283526-4	chr1	135283444	135283644	+	956.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 1 of 9)	CpG	540.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	4.49959779915072	4.82217507656965	4.92870538072953	4.51051176150262	4.96983749228839	4.88681172483681	4.56867766150827	4.95793936988923	0.345626041027607	0.32926604271502	0.64052548932529
Merged-chr5-115500590-4	chr5	115500481	115500681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1|LTR|ERVL-MaLR	-6095.0	NM_011223	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	8.05810114848052	8.13639381621908	8.02120198904425	7.74857922439924	7.6638466890484	7.733968795895	7.77234200481358	7.51290085151762	-0.413693238625157	0.0208124419411227	0.131561570660613
Merged-chr14-66232722-4	chr14	66232607	66232807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-18883.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	5.44279289401365	5.90232825832371	5.31963721384338	5.25588270127045	5.47391310298298	5.97452906398103	5.68050439524164	5.4691358542414	0.269485688520646	0.384696240844219	0.686187037390068
Merged-chr7-43895029-4	chr7	43894903	43895103	+	896.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	13831.0	NM_019928	56640.0	Mm.42080	NM_019928	ENSMUSG00000006948	Klk4	ESMP1|KLK-L1|PSTS|Prss17	kallikrein related-peptidase 4 (prostase, enamel matrix, prostate)	protein-coding	4.08036673921298	4.01088585548585	4.43156340269315	4.21596057929626	4.3290968761035	4.15386045676899	4.51934604630037	4.02729132148902	0.198294842745439	0.632757349047307	0.844138981310809
Merged-chr8-70282916-4	chr8	70282810	70283010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011984)	promoter-TSS (NM_011984)	-89.0	NM_011984	26558.0	Mm.388127	NM_011984	ENSMUSG00000003573	Homer3	AW146114	homer scaffolding protein 3	protein-coding	6.99103137142899	7.21909811150915	7.09362354836335	7.28934479434398	7.32488036032935	7.39772896175213	7.37739727054127	7.22679200960249	0.227167640704847	0.218989857645865	0.526372845621011
Merged-chr18-61895065-3	chr18	61894962	61895162	+	922.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198649, intron 1 of 22)	intron (NM_198649, intron 1 of 22)	16762.0	NM_198649	319713.0	Mm.329478	NM_198649	ENSMUSG00000032735	Ablim3	AW990719|D930036B08Rik	actin binding LIM protein family, member 3	protein-coding	3.89862965263656	3.78448540663559	3.99018470956305	3.9656657309417	3.43324117868778	3.86889493791374	3.78545727136788	3.63678832333163	-0.694630244364018	0.14105490037061	0.417798729724146
Merged-chr1-125459301-4	chr1	125459176	125459376	+	854.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-23549.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	4.10547364908531	3.53222337004534	3.71285376384758	4.00742869357909	3.98973614764661	3.8321408002208	4.12844678983594	3.92215887533165	0.297650912689024	0.524781625653901	0.783101934504021
Merged-chr5-77310082-4	chr5	77309992	77310192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153798)	promoter-TSS (NM_153798)	-6.0	NM_019836	56412.0	Mm.129136	NM_019836	ENSMUSG00000036285	Noa1	2610024G14Rik|AU022345|AtNOS1|mAtNOS1	nitric oxide associated 1	protein-coding	7.78779410668783	7.66763008022591	7.89439180486287	7.91901654373841	7.93392947408271	7.91866157945124	8.23221946637716	7.62512556767796	0.158767898416361	0.400286223176688	0.698147846003575
Merged-chr14-40921418-4	chr14	40921338	40921538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	26771.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	6.91883146006397	7.01933709845935	7.18061658413973	7.21196136669317	6.54801255663625	7.0154548572651	7.00969508039261	6.63635551267215	-0.394790642758611	0.0680462100315414	0.278439849602477
Merged-chr2-154990558-3	chr2	154990403	154990603	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-23067.0	NM_015770	50518.0	Mm.315593	NM_015770	ENSMUSG00000027596	a	A<y>|ASIP|ASP|As	nonagouti	protein-coding	4.32832010211489	4.49754689025005	4.86913953575043	4.69066567796146	3.12012352003388	3.44086539166578	3.38246892032245	3.39206117737695	-4.99685812844852	4.21256155122033e-10	2.89384902065853e-08
Merged-chr17-86964211-1	chr17	86964111	86964311	+	685.166687	f0_balb.idr	intron (NM_145491, intron 1 of 4)	intron (NM_145491, intron 1 of 4)	1100.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	4.0188922194582	3.96478071812751	4.06266768436518	3.64685279491848	3.85251352804838	3.84392739803835	3.70983328711163	3.60717498693363	-0.465928453352783	0.322156397229694	0.633631777683777
Merged-chr3-52257993-4	chr3	52257899	52258099	+	959.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10338.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	4.95242331553348	5.95912124222346	4.98900105500535	5.01979730221909	5.0220901933544	4.89706705287404	4.77682288356392	4.47605140132256	-0.94807447267514	0.0203205622620536	0.129358341169444
Merged-chr3-35732441-4	chr3	35732321	35732521	+	924.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-21642.0	NR_151626	76295.0	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	4.08413097187435	3.96201328480262	3.9867354398875	3.94455218824835	3.91352500626964	4.46886347418951	4.01940853764393	4.21632867961173	0.447729318817454	0.293952966435483	0.606364889537559
Merged-chr14-14600057-5	chr14	14599859	14600059	+	994.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103066.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	4.82908511914519	4.05141573229254	4.95364200437298	4.60986465719727	4.29032858194454	4.28994784532577	4.55713405815295	4.65258314794056	-0.429447004594812	0.310048100912378	0.622199763486801
Merged-chr17-65951136-4	chr17	65951023	65951223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023053)	promoter-TSS (NM_023053)	64.0	NM_023053	65960.0	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	5.92795317847255	5.78916758442325	6.01568795352278	5.95264954450567	5.97591900422747	6.12582154049524	5.96396053194262	5.67811618190544	0.0341739309411814	0.89056443451283	0.959051771426239
Merged-chr13-112337321-4	chr13	112337224	112337424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 6 of 11)	intron (NM_001168403, intron 6 of 11)	48806.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	6.94844950872422	6.85144208601516	7.35107057466484	7.34908810853582	6.31323763205538	6.5353437378017	6.50731130190421	6.40946400436526	-1.01288579316179	6.51528155520447e-06	0.000187905683070461
Merged-chr19-3914717-4	chr19	3914629	3914829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026316, intron 9 of 9)	intron (NM_026316, intron 9 of 9)	-1955.0	NM_001271444	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	6.69200286959406	6.95424241608586	6.60117751509336	6.6259837843112	6.75962076013447	6.53402030513054	6.64427663958542	6.44459925324987	-0.165205690835526	0.444788806614151	0.731081677662176
Merged-chr8-115392554-4	chr8	115392466	115392666	+	643.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	314328.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	3.16198406082465	3.34925694684039	3.52713455974222	3.46198209353583	3.620957019936	3.58808144749053	3.61356034165759	3.52515169484909	0.660684178542145	0.189845586223621	0.488976178326708
Merged-chr3-108609094-4	chr3	108608979	108609179	+	917.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358055, intron 1 of 14)	Lx7|LINE|L1	17346.0	NM_001358055	99512.0	Mm.285968	NM_181400	ENSMUSG00000040389	Wdr47	1810073M12Rik|AA552998|mKIAA0893	WD repeat domain 47	protein-coding	5.03157741565655	4.80209929101179	4.50852973150365	4.82168643408848	4.53574155113373	4.93315919510639	5.03747694992543	4.59481314849495	-0.0402490726988186	0.911516498543999	0.96695373445261
Merged-chr12-85487050-4	chr12	85487053	85487253	+	879.131226	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13263.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	3.52113539375117	3.44398900807013	3.52160669254493	3.36858902368183	3.53310548876701	3.52035473760938	3.75424575104843	3.72293200586305	0.583695256991386	0.22610893401568	0.534674004489669
Merged-chr11-58847130-4	chr11	58847030	58847230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6014.0	NM_146537	258530.0	Mm.377556	NM_146537	ENSMUSG00000094805	Olfr311	MOR222-1	olfactory receptor 311	protein-coding	6.95703184916364	7.26333466127749	7.04859090838162	6.86619643594003	7.52311889248682	7.28640933226872	7.41304495691681	6.97979692269879	0.388870310168862	0.064789161837825	0.270690023892348
Merged-chr3-109249035-4	chr3	109248897	109249097	+	928.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-91686.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.23309075917075	4.2745209876428	4.04194073980742	3.39450929971109	4.43708956808271	4.53200074278767	4.25771551104867	4.13878829671439	0.809959797611859	0.0936066856821813	0.334714672971565
Merged-chr18-38013935-4	chr18	38013832	38014032	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14963.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	4.70107821937458	4.71850002021976	4.58254917317638	4.57542389431081	4.651939823571	4.62794397260416	4.94922256067588	4.62058119740695	0.165767315758694	0.630329634217726	0.842779942782769
Merged-chr7-12897778-4	chr7	12897700	12897900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001447)	promoter-TSS (NM_001001447)	-9.0	NM_001290438	232878.0	Mm.40706	NM_001001447	ENSMUSG00000054715	Zscan22	AW227621|D530006B18Rik|Hkr2	zinc finger and SCAN domain containing 22	protein-coding	7.48008903617477	7.41401938569154	7.30550334817057	7.62954329441281	7.7980566357567	7.70629084980608	8.19504061706009	7.63033652054012	0.501282739305205	0.0116823788911417	0.0881491250396959
Merged-chr3-106553583-4	chr3	106553485	106553685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286986, intron 2 of 8)	intron (NM_001286986, intron 2 of 8)	-5783.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	6.99806597809748	6.79387757969264	6.84427152621905	7.18155157033447	6.81828668053871	6.81274883182208	6.82316639239727	6.67835288955188	-0.267384986403515	0.193577980716989	0.493731393226286
Merged-chr2-144287353-4	chr2	144287251	144287451	+	934.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16447.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	4.8598739495022	4.9353801040707	4.66848440474753	4.9985857639555	5.04541541257877	4.62340869138821	5.00281171031719	4.53498567553886	-0.0969341232883136	0.783879742849438	0.915840917490605
Merged-chr9-118673867-2	chr9	118673769	118673969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	RSINE1|SINE|B4	-37823.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.11817545706975	3.82575939997009	3.6050871707874	3.80349638144591	3.97775250109171	4.00884689099385	3.96766188778416	4.07319885893591	0.441143032147176	0.316417664398241	0.628394657911397
Merged-chr19-53330269-4	chr19	53330182	53330382	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008543)	promoter-TSS (NM_001008543)	-126.0	NM_001008543	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	4.96317227467756	4.97257253731809	5.77109252916619	5.66441845854458	4.91263196506771	5.14354010380316	5.36290720207781	5.26973922973003	-0.412079577386907	0.249830352496166	0.560914571501897
Merged-chr16-76002492-4	chr16	76002387	76002587	+	840.020874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155447, intron 2 of 3)	intron (NR_155447, intron 2 of 3)	1703.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	4.41309988396851	4.10891061271146	4.53405473203709	4.51344530789014	4.24382985223411	4.66517121770921	4.35139066884431	4.27840534875839	-0.0445593677762256	0.91031776307434	0.966671146059764
Merged-chr10-79554422-4	chr10	79554322	79554522	+	853.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316699, intron 1 of 13)	intron (NM_001316699, intron 1 of 13)	706.0	NM_001316699	70427.0	Mm.334193	NM_027422	ENSMUSG00000042570	Mier2	2700087H15Rik|mKIAA1193	MIER family member 2	protein-coding	4.26156421417949	3.70446416308246	3.94912320053191	4.33124857326996	3.79489863579968	4.01947294446555	3.93273252016807	4.13480580233401	-0.332088489139485	0.473123964667413	0.751053562324356
Merged-chr14-14686316-4	chr14	14686237	14686437	+	920.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16688.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	4.93920741732221	4.59461995444578	4.77264075616522	4.96672856763249	4.70563737389915	4.57903652540764	4.42850713962132	4.3983981984037	-0.62590641341771	0.0830398184458678	0.313099440468187
Merged-chr13-107762940-4	chr13	107762850	107763050	+	865.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	75553.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	3.74955238280186	3.46803807317831	3.53922270172748	3.78049119548466	3.75765164337796	3.59536950179009	3.78133323077371	3.5373938046661	0.0813187514696209	0.866440442303825	0.949970415370354
Merged-chr2-132203994-3	chr2	132203892	132204092	+	830.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	43796.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	3.85096826503351	3.76611085994474	3.6619215430497	3.8208923277397	3.23230189711765	3.28452393984126	3.5951645275119	3.55339228847789	-1.18890668587587	0.0207805106962115	0.131408668340941
Merged-chr8-27023763-4	chr8	27023674	27023874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153592)	promoter-TSS (NM_153592)	-25.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	7.96827592377156	8.34853095357586	7.78555757366852	7.95306863434955	8.51126694173291	8.48303127739401	8.12228635828655	8.15555055251007	0.384152639448242	0.0484459335460011	0.227194185189591
Merged-chr11-85842140-4	chr11	85842020	85842220	+	889.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009324)	TTS (NM_009324)	9505.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	5.23345797333194	4.83873130480828	4.38206318741949	4.92351540318323	4.39715654532643	4.69639462837615	4.40995188655288	4.27907610581008	-0.928721729291616	0.0186913896873199	0.122383812579684
Merged-chr4-45612329-4	chr4	45612234	45612434	+	824.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27602.0	NR_151513	100040557.0	Mm.383510	NR_151513	ENSMUSG00000085980	Gm12408	-	predicted gene 12408	ncRNA	4.18074401323359	3.83725801563186	3.70852460434175	3.96817373253659	4.0235704659679	4.16689505327874	4.28687433904495	4.4890629841097	0.803212397060143	0.0647614705611465	0.270646485705807
Merged-chr9-95682027-4	chr9	95681941	95682141	+	965.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 5 of 8)	MTB_Mm|LTR|ERVL-MaLR	44413.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	4.66307637165759	4.23573243596546	4.32478750332669	4.25192389442286	4.91631083607397	4.45490020947226	4.84527954555575	4.66073127845557	0.820478837889552	0.0281026925130919	0.160469761325991
Merged-chr1-164007767-3	chr1	164007701	164007901	+	824.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	12912.0	NM_001355132	69962.0	Mm.27284	NM_027279	ENSMUSG00000041396	Mettl18	2810422O20Rik|C78571	methyltransferase like 18	protein-coding	3.14811108589732	2.81615371808956	3.08859885299138	2.98749578316203	3.347346249649	3.26016522679157	3.13667683369461	3.20402291792889	0.904452038500895	0.108244428301665	0.363129274120989
Merged-chr4-124936994-4	chr4	124936906	124937106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177573)	promoter-TSS (NM_177573)	-42.0	NM_177573	194268.0	Mm.266907	NM_177573	ENSMUSG00000044730	9930104L06Rik	C1orf109	RIKEN cDNA 9930104L06 gene	protein-coding	7.50496691084932	7.73422331992845	7.42900638651488	7.5267674041474	7.82131519933502	7.63588958263349	7.59351387833216	7.49167915816669	0.121643949717604	0.499785231166889	0.76850696952904
Merged-chr8-83738323-4	chr8	83738223	83738423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	intron (NM_011925, intron 1 of 19)	2988.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	7.81625828670201	7.67207150818154	7.8021773196102	7.77076063569547	8.047510856554	7.63502554699141	8.1518220213681	7.99670606652397	0.273670097774767	0.125128462359637	0.392651713719377
Merged-chr11-23846113-4	chr11	23845987	23846187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49183.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	4.61812359383056	4.71266823364119	5.18345587512307	4.89723332066699	4.93849734166819	4.79725491510932	5.06984503812677	4.99651296378709	0.167806522670279	0.618833496779019	0.83609417586762
Merged-chr10-87831765-3	chr10	87831665	87831865	+	995.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-26500.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	3.26511459014752	3.21933940673983	3.64724024067508	3.6449310578515	3.43229254981599	3.61274671228438	3.37398705278932	3.3257672099623	-0.0972058781165936	0.856629079894197	0.946037380962407
Merged-chr8-104341420-4	chr8	104341315	104341515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024217, intron 1 of 4)	intron (NM_024217, intron 1 of 4)	821.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	7.25535086200483	6.9507490660835	7.53422990838738	7.33645650799966	7.26824188452961	7.0341621147055	7.22033535998488	7.41220215828727	-0.0573330826519877	0.781139181891583	0.914785235722602
Merged-chr1-120120565-1	chr1	120120465	120120665	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_001172074)	promoter-TSS (NM_001172074)	354.0	NM_001037999	13167.0	Mm.2785	NM_007830	ENSMUSG00000026385	Dbi	ACBD1|Acbp|EP|endozepine	diazepam binding inhibitor	protein-coding	3.54463992967605	3.52904138836047	3.91306763213372	3.76033210349449	3.86935861924312	4.16726569185797	3.53227503679221	3.65921690572128	0.380955394128016	0.442480903014613	0.729160258269139
Merged-chr9-57261627-4	chr9	57261514	57261714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028820, intron 1 of 2)	CpG	985.0	NM_028820	74211.0	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	5.55073865986151	5.87882286085605	5.7128681457869	6.01207007677142	5.59524708394835	5.51387903852259	5.73310496217809	5.97981989551808	-0.166934708142499	0.546486970286614	0.796412842595121
Merged-chr1-34835824-4	chr1	34835715	34835915	+	946.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 2 of 6)	intron (NM_001160236, intron 2 of 6)	7235.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	4.38154426390613	4.68581898055358	4.52354826157717	5.32891071793461	4.75146176076585	4.61039039902747	4.5467732347434	4.99934928388725	-0.143974880366849	0.73270437763769	0.89413600493542
Merged-chr18-37935576-4	chr18	37935486	37935686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305981)	promoter-TSS (NM_001305981)	-110.0	NM_001305980	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	8.65184519051717	8.83423312627311	8.65320961313181	8.65826055700478	8.67584171088397	8.64925225690473	8.76802280898309	8.45054175641996	-0.0747150315923945	0.625771700457831	0.840098340545957
Merged-chr1-134094028-4	chr1	134093929	134094129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14874.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	8.12188038111275	8.10517031708724	8.3440048583414	8.2632913372232	8.20445549847565	8.13091988992978	8.492103587266	8.09861900280116	0.0358289288177308	0.833374890079293	0.936262627664725
Merged-chr12-8889452-4	chr12	8889358	8889558	+	955.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31849.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	4.57163865648175	4.48351708644837	4.39963597603981	4.6060549678607	4.71588574438374	4.57542176681286	4.86774551954572	4.4860684976489	0.321781412952863	0.366252011823171	0.670803899584733
Merged-chr6-90606798-4	chr6	90606708	90606908	+	867.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027868, intron 1 of 10)	intron (NM_027868, intron 1 of 10)	1928.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	4.06978422359521	3.58457585198916	3.77277465215352	3.84259427016042	3.63678332115378	4.15002593269737	4.21578199480681	4.02282991293213	0.525487057558623	0.266279491716947	0.578046727572705
Merged-chr15-103215319-4	chr15	103215211	103215411	+	878.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110216)	promoter-TSS (NM_001110216)	41.0	NM_007626	12419.0	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	4.53006074505424	4.32538811836455	4.56597625754041	3.57192984934345	4.33719511370483	4.02334674430125	4.04454918581961	4.15818736345533	-0.370104572990066	0.452788984994223	0.73705030775748
Merged-chr9-40801130-7	chr9	40801027	40801227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031165)	promoter-TSS (NM_031165)	-146.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	9.07630377432409	9.41238159584069	9.10149625546251	9.08329594909776	9.3260625648997	9.48159053979141	9.39831677504988	9.10597150810728	0.195637819573224	0.225131028320241	0.533502988868384
Merged-chr2-91194879-4	chr2	91194784	91194984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013839, exon 1 of 10)	5' UTR (NM_013839, exon 1 of 10)	151.0	NM_013839	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	6.99058538786285	7.52143781641673	7.74952190496383	7.54589475027762	7.82385183610225	7.79566696384928	7.88547837578893	7.84156675429855	0.462771135397774	0.0213829473028819	0.133850743652434
Merged-chr3-131300090-4	chr3	131300000	131300200	+	912.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027816, intron 1 of 4)	L1M5|LINE|L1	3127.0	NM_027816	71519.0	Mm.473179	NM_027816	ENSMUSG00000027983	Cyp2u1	8430436A10Rik	cytochrome P450, family 2, subfamily u, polypeptide 1	protein-coding	5.10355517492953	5.00836970513639	4.74493727604841	5.00047535772238	4.95743286956105	5.36526771790642	4.68134657034688	4.96914339178823	0.0745751809316341	0.825714079066873	0.933159928336386
Merged-chr2-140066796-4	chr2	140066687	140066887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110350)	promoter-TSS (NR_110350)	18.0	NM_001159640	75812.0	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	8.91000390352243	9.06813174253359	9.02853174606092	9.26653230517865	8.98429368192547	9.0930557793078	9.40307269653137	8.93239901103623	0.0453253455851332	0.790703845065771	0.918851776071582
Merged-chr18-10181490-4	chr18	10181386	10181586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009071, exon 1 of 33)	5' UTR (NM_009071, exon 1 of 33)	306.0	NM_009071	19877.0	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	5.72282724562957	5.54071277813907	6.00164313439146	5.35595448788872	5.48665571324293	5.63492718770804	5.27564680572131	5.76669928691963	-0.187631191873893	0.534222894256082	0.789066961676578
Merged-chr10-44428246-6	chr10	44428181	44428381	+	894.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30467.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	3.20292943472198	3.15137686073018	3.47520043075032	3.37130882727906	3.19584746687897	3.11658290485208	3.25041777711097	3.42329063333924	-0.214827503012113	0.694342825299518	0.875868431105577
Merged-chr11-98907641-4	chr11	98907518	98907718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011799)	promoter-TSS (NM_011799)	-271.0	NM_001025779	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	8.33691043954202	8.46593248388955	8.12734789656909	8.09350196635577	8.34198117950341	8.4149681525101	8.02349183718689	8.33280670446405	0.0322376311117872	0.855407178748574	0.945640332561297
Merged-chr1-172476114-2	chr1	172475994	172476194	+	592.5	f0_balb.idr|f0_c57.idr	intron (NM_029612, intron 1 of 3)	intron (NM_029612, intron 1 of 3)	734.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	3.40229341090728	3.63350067308139	3.33768145557272	3.5239657370719	3.79461448948528	3.90586217178117	3.76914069762216	3.6851870206221	0.940045650445628	0.0496222153867053	0.230687719222147
Merged-chr3-51882116-4	chr3	51882029	51882229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	220950.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	5.79868025241573	5.2286111686118	5.7335381491095	5.58972832760472	5.19436080837394	5.27924087098227	5.56125324053211	5.302028838033	-0.460785910797954	0.122686410061084	0.388188832758619
Merged-chr18-55146887-4	chr18	55146782	55146982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-154291.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	6.01719264028966	5.50135095137193	6.33377571033497	6.50402247458209	6.09361241391154	6.10334601938748	6.46365374271789	6.29387846242918	0.137247019168685	0.644172729826067	0.850110700391012
Merged-chr12-44355275-3	chr12	44355165	44355365	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146031, intron 1 of 27)	intron (NM_001146031, intron 1 of 27)	26380.0	NM_001146031	319504.0	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	6.45068334950654	5.42381781723517	6.80772975277581	6.83762321847439	3.90558631788395	4.06121138485681	3.97022422992721	3.98523978324529	-6.38256415072529	2.16953134689516e-09	1.31202269958072e-07
Merged-chr13-59823150-4	chr13	59823035	59823235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153538)	promoter-TSS (NM_153538)	12.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	8.03958957357165	8.45468746210386	8.14184370542747	8.09878489959256	8.52434340995662	8.77525311342033	8.7052858879602	8.62265216734689	0.586150774162071	0.000499336994457699	0.0077064848067009
Merged-chr14-20082843-4	chr14	20082749	20082949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026209, intron 1 of 1)	CpG	323.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	7.71145720665049	7.90290874975131	7.69590985097914	7.70426884613243	8.00059188379543	8.10495522296617	8.07810751659478	7.93617028360655	0.355713312448718	0.0282765558634911	0.161105976931677
Merged-chr2-6717165-4	chr2	6717074	6717274	+	893.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	4488.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	4.27211500677965	4.22700877306156	4.17251937407603	4.61163173770777	4.59244109598002	4.53993634009755	4.85214468077602	4.36317476775718	0.553524728873273	0.166236130274571	0.45739103711385
Merged-chr8-114438432-4	chr8	114438318	114438518	+	853.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1234.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	3.77739780200101	3.53895909191306	3.66698111379605	3.84118969404683	4.41587714706218	3.89853036201113	3.95719883076025	3.60600092301132	0.829525756146858	0.0942066883697475	0.335763751012481
Merged-chr6-124508578-4	chr6	124508490	124508690	+	830.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181344, exon 6 of 6)	exon (NM_181344, exon 6 of 6)	-4031.0	NM_023143	50909.0	Mm.333375	NM_023143	ENSMUSG00000055172	C1ra	AI132558|C1r|mC1rA	complement component 1, r subcomponent A	protein-coding	3.84443326090762	3.73800926847325	3.57529994206288	3.81660366349299	3.89316065871928	3.9651723575003	3.62033799398849	3.84272234523717	0.246719550807242	0.589521622383608	0.820464677958613
Merged-chr5-77061659-3	chr5	77061555	77061755	+	662.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027970)	TTS (NM_027970)	33612.0	NM_001159901	74318.0	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding	3.50115288871066	3.36686545370074	3.73491905907275	3.33315933958377	3.26419867279367	3.19217985486701	3.32520629319079	3.27643472846403	-0.787574553444893	0.144592043691964	0.423763030877504
Merged-chr15-58882496-4	chr15	58882406	58882606	+	893.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-6723.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	4.55601548540743	4.45322132422363	4.35378169646879	3.89272273698324	4.22679526527244	4.52773287456251	4.7080090721792	4.16229063867014	0.226642305456606	0.600356783214178	0.826767290075753
Merged-chr2-4391352-4	chr2	4391249	4391449	+	953.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172475, intron 1 of 22)	ORR1F|LTR|ERVL-MaLR	-9627.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	4.07058985378532	3.87098806257981	4.40569217285405	4.66650403529039	4.58590974488478	4.53537316641847	4.50480384172919	4.36011192428444	0.43851869972397	0.31711188685065	0.628948589894739
Merged-chr2-33432336-3	chr2	33432226	33432426	+	860.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1002.0	NM_001276332	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	3.26695573946262	3.16465791068969	3.13185943666214	3.47349167934778	3.43663413001542	3.50641433932045	3.8950394658847	3.70035557340321	1.20085624702696	0.029740549523966	0.166297430362903
Merged-chr6-54866946-4	chr6	54866852	54867052	+	821.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199143, intron 2 of 4)	intron (NM_199143, intron 2 of 4)	50036.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	3.92455786322155	4.29747038287648	4.27111616739644	3.52765855747077	3.96782479102366	3.83123480714338	3.44270524019691	3.97143655880946	-0.594119682739085	0.25989489074616	0.571684145019647
Merged-chr9-46218323-3	chr9	46218244	46218444	+	815.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 21 of 24)	intron (NM_027498, intron 21 of 24)	-10286.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	3.15311743553605	3.56215929948742	3.37818603952075	3.13589281062926	3.08222957525325	2.83167865285695	3.2013730712013	3.32369555542842	-0.743021614819988	0.221745786462	0.529830256279916
Merged-chr2-118700345-4	chr2	118700253	118700453	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081971, exon 1 of 1)	3' UTR (NM_001081971, exon 1 of 1)	3610.0	NM_001081971	383787.0	Mm.35758	NM_001081971	ENSMUSG00000078137	Ankrd63	Gm1337	ankyrin repeat domain 63	protein-coding	4.82213161119652	4.47607329681957	4.42776135036623	4.51547579261385	4.96281067096785	4.69189699730093	4.69432043254738	4.51428138607259	0.371030014037986	0.304748459236249	0.617284869021091
Merged-chr5-121718646-4	chr5	121718561	121718761	+	891.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	intron (NM_009125, intron 1 of 24)	7052.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	4.58979190034047	5.23561809844106	4.59051859259397	4.84716998546991	4.53660318876451	4.59035171068778	4.52742966653878	4.6286727472863	-0.597611716387749	0.107333199448027	0.361382260156614
Merged-chr11-83115334-2	chr11	83115234	83115434	+	819.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1486.0	NM_011407	20555.0	Mm.10948	NM_011407	ENSMUSG00000078763	Slfn1	AV316259	schlafen 1	protein-coding	3.21241114385121	3.60407740207742	3.27443295074648	3.16081799967717	3.29305089467902	3.44684531845004	3.62315874594067	3.33184928537087	0.378544339229894	0.483532814268301	0.757875105956518
Merged-chr11-110166082-4	chr11	110165991	110166191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147220, intron 1 of 38)	intron (NM_147220, intron 1 of 38)	2062.0	NM_147220	217262.0	Mm.291459	NM_147220	ENSMUSG00000041797	Abca9	D630040K07Rik	ATP-binding cassette, sub-family A (ABC1), member 9	protein-coding	7.16266511217381	7.01513070268694	6.95123483181155	7.01666996207106	6.94476256297604	6.9923646132172	6.6765999207745	6.92031154035738	-0.203859302366531	0.294904061777373	0.607033490837296
Merged-chr5-43854318-4	chr5	43854201	43854401	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14508.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	5.63297601875737	5.34550669046157	5.94172130312426	5.86316497737747	5.29097027884336	5.22379931805298	5.58030860291422	5.15166745826633	-0.689661384537738	0.022428037998698	0.138288748848694
Merged-chr19-11999470-4	chr19	11999355	11999555	+	927.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	33611.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	4.57508596091427	4.26483826613766	4.53455814167455	4.86224573199334	4.60958975099829	4.33081290182257	5.04655892959973	4.53165904102267	0.146149564000054	0.71782176095253	0.887191620352087
Merged-chr7-45238995-4	chr7	45238912	45239112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007645)	promoter-TSS (NM_007645)	103.0	NM_001290802	12493.0	Mm.3689	NM_007645	ENSMUSG00000030798	Cd37	Tspan26	CD37 antigen	protein-coding	5.498643264907	5.82095986524813	5.47102630144798	5.26323500796963	5.49904443947463	5.43015751975906	5.44360426131238	6.05557539142918	0.191079506394535	0.538121664742433	0.791350811427248
Merged-chr17-56183496-1	chr17	56183396	56183596	+	729.0	f0_balb.idr	intron (NM_080837, intron 1 of 5)	intron (NM_080837, intron 1 of 5)	424.0	NM_080837	28106.0	Mm.294870	NM_080837	ENSMUSG00000019579	Mydgf	D17Wsu104e|Il25|Ly6elg	myeloid derived growth factor	protein-coding	4.13275545850733	4.45238903541015	4.08182259494177	4.29579017782234	4.07076200781957	4.40508839199275	4.25783689894245	4.75665622697919	0.327049691676786	0.436958049296346	0.725408654678613
Merged-chr6-89262527-4	chr6	89262452	89262652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23173.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	5.69731166975186	6.25564469055598	5.72634250259421	6.33668021624788	6.08741665676795	5.95963385476596	6.46087897057188	6.39548767304324	0.282639128693267	0.321701541766019	0.633233286881578
Merged-chr2-150749002-4	chr2	150748881	150749081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172117)	promoter-TSS (NM_172117)	-100.0	NM_001355068	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	8.0022675461903	8.17438236223542	8.03776140259862	8.06289452972242	8.2601075763316	8.06516982310563	8.24300057701496	8.43746691735162	0.239780329161147	0.13953865246175	0.41537262738555
Merged-chr8-117157236-3	chr8	117157131	117157331	+	865.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081151)	promoter-TSS (NM_001081151)	-904.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	3.17388448986743	3.22093903971241	3.71887390394718	3.24502428787678	3.10061699363761	2.93343433962095	3.10062950069474	3.39827533660701	-0.789056494809827	0.189495955742773	0.488417317273132
Merged-chr5-148311039-4	chr5	148310962	148311162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359511, intron 6 of 6)	MuRRS-int|LTR|ERV1	45845.0	NM_001359505	77521.0	Mm.244177	NM_029920	ENSMUSG00000029651	Mtus2	5730592G18Rik|A730013O20Rik|AU067634|C130038G02Rik|Cazip|Gm763|mKIAA0774	microtubule associated tumor suppressor candidate 2	protein-coding	6.39924984653743	6.11332671952516	6.1936111438999	6.38496637288788	6.2983306034277	6.28666270217929	6.55913553108076	6.58813147588303	0.22681216964086	0.321308933406362	0.633056953827648
Merged-chr5-75978410-3	chr5	75978338	75978538	+	953.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010612)	promoter-TSS (NM_010612)	-10.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	3.56361076582799	3.55581921236108	3.99996368803195	3.80349423164711	2.96386362837503	3.17669493618017	3.19643720039554	3.39555566443825	-2.07780527998154	0.000435965295764936	0.00690050562313817
Merged-chr14-55762561-6	chr14	55762372	55762572	+	943.263916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020490, exon 2 of 2)	exon (NM_020490, exon 2 of 2)	1044.0	NM_020490	57260.0	Mm.159670	NM_020490	ENSMUSG00000040432	Ltb4r2	5830462O07Rik|BLT2|LTB4-R 2|LTB4-R-2|LTB4-R2	leukotriene B4 receptor 2	protein-coding	4.01922374364124	3.89441941275837	3.65014069267113	3.65991856344218	3.89215085954007	3.83078075710158	3.80579198613161	4.47373614322055	0.608859207025966	0.202207577454579	0.50466105033799
Merged-chr18-23887529-3	chr18	23887444	23887644	+	824.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 7 of 7)	L2c|LINE|L2	-67144.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	3.94182278687536	3.81874277638482	4.3376705952719	4.3233045409593	3.25562870699117	3.33717201017035	3.42712274179797	3.84351149244427	-2.02258992672989	0.000254660288077447	0.00443515161366886
Merged-chr10-121364999-4	chr10	121364872	121365072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029364)	promoter-TSS (NM_029364)	-118.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	7.62824580723656	7.73906490389056	7.68078750681964	7.77784967881822	7.92087299408635	7.78919635624874	7.95887304653079	7.58008518919736	0.146644454708341	0.398118459185175	0.696335068389275
Merged-chr13-65226438-4	chr13	65226355	65226555	+	870.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-20739.0	NM_175290	97895.0	Mm.315815	NM_175290	ENSMUSG00000032999	Nlrp4f	C330026N02Rik|C86045|Nalp-kappa|Nalp4f	NLR family, pyrin domain containing 4F	protein-coding	4.46387080851637	4.67377578115187	4.46455420501885	4.41394684251715	4.87733794455946	5.12958862345486	4.87135179955924	4.7517307315374	0.862420262097207	0.0116509226559229	0.0880081740131524
Merged-chr11-54028207-4	chr11	54028084	54028284	+	990.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330304)	promoter-TSS (NM_001330304)	-80.0	NM_001330304	30805.0	Mm.274590	NM_019687	ENSMUSG00000020334	Slc22a4	Octn1	solute carrier family 22 (organic cation transporter), member 4	protein-coding	5.55730847837702	5.89366528056879	5.53146072187409	5.60863635860578	5.12481901991949	5.78395056981756	5.55622017544614	4.99922246554683	-0.451360248807605	0.155520792563965	0.441116337673261
Merged-chr11-104367117-4	chr11	104366987	104367187	+	935.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 5 of 14)	ID_B1|SINE|B4	75204.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	4.78391060089465	4.88066224853888	5.11592761283526	5.11548583456749	4.66555688870119	4.57160730864137	4.64435538475366	4.85502611166833	-0.622656848451462	0.0661503313786976	0.273986422492747
Merged-chr5-33378533-4	chr5	33378418	33378618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081101)	promoter-TSS (NM_001081101)	-178.0	NR_153108	71101.0	Mm.132178	NM_027674	ENSMUSG00000037355	Uvssa	4933407H18Rik|D330017J19Rik|Kiaa1530|mKIAA1530	UV stimulated scaffold protein A	protein-coding	8.19758524218341	8.61897184128177	8.38101651609002	8.18000555030986	8.39013053526552	8.63543301031941	8.32063012815158	8.39660446218158	0.108010943665982	0.539903098756494	0.79241870993623
Merged-chr11-46830548-4	chr11	46830443	46830643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 5 of 8)	MLTR14|LTR|ERV1	19744.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	6.10546637643013	6.12864736720182	5.81067778662419	6.12362388684594	5.78510492682711	5.50504144759634	5.603434312995	5.38756737850699	-0.75587335097958	0.00440075675939313	0.0431997607746302
Merged-chr17-33943546-5	chr17	33943433	33943633	+	948.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020603, intron 7 of 14)	intron (NM_020603, intron 7 of 14)	2810.0	NM_020603	57315.0	Mm.2437	NM_020603	ENSMUSG00000024312	Wdr46	2310007I04Rik|Bing4|C78447|C78559	WD repeat domain 46	protein-coding	5.01998205883379	5.01549488611001	5.11593434753412	5.02971157426258	4.63238535627915	4.68248157900385	4.8943861118915	5.14252024806505	-0.393007402714732	0.235901311546481	0.545896142740888
Merged-chr6-125481903-4	chr6	125481748	125481948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007657, intron 1 of 7)	intron (NM_007657, intron 1 of 7)	12912.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	5.86370007523957	6.3251862843376	6.13875874017777	5.93631713286954	6.34066723651202	6.50385681201011	6.00082753676771	6.48955512765563	0.415610347585038	0.0985051059972166	0.343994301133918
Merged-chr2-120096409-3	chr2	120096307	120096507	+	913.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 5 of 5)	intron (NM_133838, intron 5 of 5)	58168.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	3.32797440742091	3.41487050736276	3.69468006908814	3.70906010834623	3.20826970303521	3.31304314630802	3.31662775398306	3.54835334015911	-0.711477715118799	0.184340490312511	0.481705340135624
Merged-chr10-88420843-4	chr10	88420751	88420951	+	963.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 7 of 20)	intron (NM_001004164, intron 7 of 20)	-38736.0	NM_011517	20962.0	Mm.297977	NM_011517	ENSMUSG00000020059	Sycp3	Cor1|Scp3	synaptonemal complex protein 3	protein-coding	5.45077246178203	5.17257277882061	4.90748813679867	5.45606679993941	5.04576545478912	5.00605615020839	5.16704840858022	5.54767572485888	-0.12749254751687	0.699948164369051	0.878998066189568
Merged-chr4-40301276-4	chr4	40301171	40301371	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11961.0	NR_040663	75819.0	Mm.399244	NR_040663	ENSMUSG00000087137	4930509K18Rik	-	RIKEN cDNA 4930509K18 gene	ncRNA	5.47663679709787	5.29833600778196	5.09398283513237	5.53472416261023	5.59170579443087	5.75593675953236	5.50375569698891	5.32772589905742	0.308608583280203	0.291099813667749	0.603383623676665
Merged-chr8-11451635-4	chr8	11451569	11451769	+	871.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26260.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	4.00919257426467	3.89637152372886	4.10314809117385	4.19672293402622	4.36839045397562	3.86126300095095	4.08511977772261	3.73995912390166	-0.0308296148942102	0.946274391653713	0.980861070514278
Merged-chr5-52476418-4	chr5	52476326	52476526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4883.0	NM_001256059	100503884.0	Mm.332379	NM_001256059	ENSMUSG00000045790	Ccdc149	Gm447	coiled-coil domain containing 149	protein-coding	7.17672703188413	6.51769866049688	7.19971853421929	7.63826279038709	6.93181255564999	6.94437526903803	7.10867114111846	6.84954630763164	-0.33382156157395	0.199521709432276	0.50147358341222
Merged-chr9-108005306-3	chr9	108005216	108005416	+	877.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013785, intron 1 of 5)	intron (NM_013785, intron 1 of 5)	2668.0	NM_013785	27399.0	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	3.64182211240774	3.70380864883144	3.6985733674918	3.8789641417097	3.63549395210713	3.92438588600776	4.0172717468293	3.89969579536912	0.361849786031344	0.433744272764019	0.723256357491443
Merged-chr2-174110512-10	chr2	174110417	174110617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_213733, exon 1 of 12)	exon (NM_213733, exon 1 of 12)	166.0	NM_213733	228961.0	Mm.295629	NM_213733	ENSMUSG00000039263	Npepl1	BC023239|C85514|mKIAA1974	aminopeptidase-like 1	protein-coding	4.97169360048696	4.78117809567956	5.45851394210444	5.2535832261327	4.60156969126519	5.14665770902953	4.8772498561585	4.74088999888726	-0.582358540503032	0.103445899589307	0.353438087979036
Merged-chr6-145779545-3	chr6	145779441	145779641	+	796.25	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28842.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	3.48163119714791	3.48783204043103	3.87983090200507	4.07245996982417	4.03831301789395	3.72647051768632	4.23705645229669	3.77571905479348	0.537728930986527	0.299768660988805	0.61202258430546
Merged-chr19-4398258-1	chr19	4398158	4398358	+	788.200012	f0_balb.idr	Intergenic	CpG	-1181.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	4.22493998338145	3.97151456074927	4.09292679865829	4.06073637972124	4.09932879341235	4.06685895208702	3.76745784005112	4.41360640179653	0.0536248902130182	0.901835969474019	0.963555825043109
Merged-chr1-37865204-4	chr1	37865090	37865290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207228)	promoter-TSS (NM_207228)	-108.0	NM_207228	211484.0	Mm.332756	NM_207228	ENSMUSG00000060771	Tsga10	4933432N21Rik|AI843383|Gm217|Mtsga10	testis specific 10	protein-coding	8.82240262493659	9.08314743970541	9.04883119602162	8.87355453795002	8.83942658746599	9.18187007132384	9.02551884873801	8.82227113742002	0.015786474346878	0.921575610897042	0.9709178534782
Merged-chr18-36286969-4	chr18	36286884	36287084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008989, intron 1 of 1)	intron (NM_008989, intron 1 of 1)	5822.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	7.27816625214537	7.13197736511652	6.86694408603791	7.17343983342248	7.01028769727634	6.9422323419795	7.04885722274727	6.8481451349222	-0.218586535040991	0.264723717542862	0.576566406596513
Merged-chr16-91820472-4	chr16	91820417	91820617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010587, exon 13 of 39)	exon (NM_010587, exon 13 of 39)	91146.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	5.98623219312127	6.24384646016255	5.96396932261799	6.44808900460678	6.2676167890835	6.11779140607926	6.22478136749258	6.35950059759341	0.0738453897963095	0.764770809138004	0.907812114625849
Merged-chr5-112343141-4	chr5	112342997	112343197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027323)	promoter-TSS (NM_027323)	2.0	NM_138646	192232.0	Mm.238043	NM_138646	ENSMUSG00000042328	Hps4	2010205O06Rik|AU040608|BLOC-3|C130020P05Rik|le|mKIAA1667	HPS4, biogenesis of lysosomal organelles complex 3 subunit 2	protein-coding	6.37872400846871	6.35347329053523	5.39217061772378	6.21410288141189	6.37070831990567	6.44807414696838	6.25849708480729	6.53622502647928	0.390571376949091	0.169798733804816	0.462572874827502
Merged-chr18-52909357-4	chr18	52909243	52909443	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199151, intron 11 of 11)	intron (NM_001199151, intron 11 of 11)	141199.0	NM_001199154	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	3.80618869871491	4.04390307410416	3.96261658078428	4.10517398691257	3.79108704026755	4.39308741308543	3.89641074836722	3.6896352705872	-0.0673881141399996	0.88575835424083	0.957119776179682
Merged-chr10-79882134-4	chr10	79882058	79882258	+	862.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011178, exon 4 of 5)	exon (NM_011178, exon 4 of 5)	2491.0	NM_011178	19152.0	Mm.2364	NM_011178	ENSMUSG00000057729	Prtn3	PR3|mPR3	proteinase 3	protein-coding	4.32183455789468	3.80704560531025	4.43654428504982	4.24389247530072	3.78419792325266	4.13244353421034	3.93994113748651	4.19443190885554	-0.531975102670887	0.236807478180273	0.546855253849193
Merged-chr2-24383826-4	chr2	24383787	24383987	+	909.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355231, intron 2 of 17)	intron (NM_001355231, intron 2 of 17)	-1445.0	NM_177611	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	4.00749764503151	3.80646085412401	3.96043346331744	3.90821128847265	4.08949458074014	3.86934751298972	4.16324738682239	3.85728252509492	0.238447057758369	0.57840670276228	0.814695658189852
Merged-chr16-90380028-2	chr16	90379928	90380128	+	936.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-6369.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	3.24975175369388	2.92630964351964	3.0328713344902	2.65570665350488	3.04467742053987	2.9507110479503	2.96152326527006	2.97074994398045	0.0396557521030539	0.949660199781735	0.981984185023304
Merged-chr5-144768063-4	chr5	144767958	144768158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081362)	promoter-TSS (NM_001081362)	-734.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	6.44766431908259	6.00029516758004	6.06732562406287	6.00524522725446	6.1980730813129	6.13311904609825	6.19476273552977	5.90502893719136	-0.0248041905684856	0.92024202263894	0.970412997665404
Merged-chr11-80185369-4	chr11	80185347	80185547	+	929.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028019, intron 1 of 4)	L1MB7|LINE|L1	1575.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	4.71212659926344	5.26243014906853	4.27459866618224	3.32019815167067	4.24236547376733	4.35974588104357	3.99757826859423	4.27181963872352	-0.830781634558018	0.302813223555561	0.615317092679246
Merged-chr18-12168024-4	chr18	12167913	12168113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029623)	promoter-TSS (NM_029623)	-717.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	5.22433938038235	5.3518047334769	4.97308925874572	5.1909276183333	5.40517134130415	5.8115443537694	5.46255597777639	5.43218597382087	0.597462975358321	0.041827728170754	0.207204626860507
Merged-chr6-59180585-4	chr6	59180478	59180678	+	944.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28292.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	4.53079787340582	4.60169563426792	4.44796604663407	4.61292670794629	4.51081418118623	4.28604239468962	4.79573622225259	4.3559564949406	-0.112050768257426	0.763662426347509	0.90733001599047
Merged-chr7-30282946-4	chr7	30282803	30283003	+	969.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_144498, intron 2 of 2)	RMER19B|LTR|ERVK	-2482.0	NM_146186	233064.0	Mm.271677	NM_146186	ENSMUSG00000037020	Wdr62	2310038K02Rik|b2b1508Clo	WD repeat domain 62	protein-coding	6.77166014262257	6.90495298100271	6.60594396894097	6.44192383263299	5.16386347735351	5.12995594960748	5.28837175042723	5.66903351395867	-2.1822843293341	7.62255601123833e-15	1.2030286348646e-12
Merged-chr3-51224784-6	chr3	51224670	51224870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009834, exon 1 of 3)	5' UTR (NM_009834, exon 1 of 3)	323.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	6.80367590715785	7.08792235652432	7.37758602556257	6.66909822557244	6.57756312131538	6.99594666332376	6.79829801988043	6.71157956528864	-0.323122603998716	0.177569167813027	0.473023794751625
Merged-chr9-108831780-4	chr9	108831663	108831863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001359573, exon 2 of 36)	exon (NM_001359573, exon 2 of 36)	5718.0	NM_001359572	107934.0	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3	protein-coding	5.32083357105794	5.99398831008707	5.67585184344572	5.74547677604803	5.78679888739756	5.82515096133894	5.9012393198154	5.50709313194727	0.083222102022148	0.76827431396494	0.909356419531329
Merged-chr9-50948261-4	chr9	50948164	50948364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 3 of 15)	intron (NM_178710, intron 3 of 15)	60809.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	5.55742888425393	5.47501228895524	5.970668936246	6.18699144379151	5.92702466193469	5.4870421412387	5.7399000392606	5.76511080474906	-0.166143595876097	0.581395431397405	0.816254905708753
Merged-chr14-27237862-4	chr14	27237768	27237968	+	896.4213869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027871)	promoter-TSS (NM_027871)	-142.0	NM_027871	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	4.076605708272	3.98438752572738	3.93870878846565	3.84604610735055	3.71146706691769	3.84673942774504	3.92200381380808	4.07467443938468	-0.188263486073725	0.66892268429264	0.863340847602282
Merged-chr2-118883485-4	chr2	118883374	118883574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-18141.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	4.69392787262546	5.05108198559932	4.92908716549932	4.76025467109755	4.93320442798376	5.20409883697004	5.03964140514451	5.09268982256804	0.401168329707638	0.210268508249957	0.514726489965392
Merged-chr12-30606901-4	chr12	30606799	30606999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22456.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	7.40895072068955	7.51787679657309	7.42933994001774	7.62920695645659	7.324821864745	7.28403650361816	6.99512391645329	7.06408958581116	-0.440018496776721	0.0193072083847328	0.124967517106202
Merged-chr17-56008472-4	chr17	56008359	56008559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026530)	promoter-TSS (NM_026530)	-323.0	NM_145934	106766.0	Mm.204991	NM_145934	ENSMUSG00000038781	Stap2	AW049765|STAP-2	signal transducing adaptor family member 2	protein-coding	7.15899735844907	7.23694989691529	6.62072821058076	7.03900800385934	7.05081165647186	6.91106118750845	7.05697626003672	6.80332804589206	-0.103267496333109	0.631802532176392	0.843565602967326
Merged-chr8-122333321-3	chr8	122333219	122333419	+	790.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009569, intron 5 of 9)	intron (NM_009569, intron 5 of 9)	29509.0	NM_133202	170732.0	Mm.154808	NM_133202	ENSMUSG00000039079	Trhr2	TRH-R2	thyrotropin releasing hormone receptor 2	protein-coding	3.73593325619294	3.78941833625775	3.40328463570462	3.50111985003951	3.61509264639445	3.69732338476189	3.62004458324233	3.68444089317815	0.128460727639519	0.789649497005305	0.918556325336503
Merged-chr3-57749054-4	chr3	57748898	57749098	+	973.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357080, intron 2 of 10)	intron (NM_001357080, intron 2 of 10)	12941.0	NR_130743	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	4.24805115781315	4.52780152134414	4.59569614265726	4.52286092825222	4.61280374155297	4.56344380378887	4.53596671610343	4.34186272762981	0.0840066098379783	0.818917215453537	0.930617375351155
Merged-chr8-71406857-4	chr8	71406761	71406961	+	950.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310502, intron 3 of 8)	intron (NM_001310502, intron 3 of 8)	849.0	NM_172756	234396.0	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	4.99446434002286	4.46959430922092	4.82351746537155	4.79513427481541	5.07391323004531	4.84291570684243	4.76361456548028	4.89176624342418	0.254870713230163	0.45612172426271	0.739518260919928
Merged-chr5-44223685-1	chr5	44223585	44223785	+	700.666687	f0_balb.idr	intron (NM_173764, intron 1 of 13)	intron (NM_173764, intron 1 of 13)	2921.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	3.23353203258915	3.06025415437854	3.23401351663766	3.57043206415077	2.91310730569331	2.76513833786975	2.72990242292902	2.65842785114894	-2.39936731700209	0.000901044993207321	0.0123933297722713
Merged-chr13-85430221-4	chr13	85430123	85430323	+	925.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140737.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	5.09707819874396	4.39510004446408	4.79365344595044	4.90717874768836	5.47882718795071	4.47499849212565	4.91385530796693	4.71183502889843	0.283479850293151	0.494066353973561	0.764785877595723
Merged-chr6-37723554-4	chr6	37723467	37723667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147244.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	5.36992047247814	5.23921960000306	4.85430139618326	4.6334723771097	7.00250388533938	6.97220563281517	6.75918298378705	7.05090840678313	3.05273737290547	2.01278024218265e-30	2.65310527515406e-27
Merged-chr13-23706193-4	chr13	23706077	23706277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347493, intron 2 of 4)	intron (NM_001347493, intron 2 of 4)	4677.0	NM_001347493	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	6.71010015449412	6.52575391399066	6.57399578269504	6.52221018795358	6.81655208219399	6.59697707247008	6.66264232860424	6.56930829299808	0.135344276716032	0.511947973451956	0.775668292015302
Merged-chr1-150377469-4	chr1	150377378	150377578	+	995.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357579, intron 9 of 13)	L1_Mus2|LINE|L1	-15360.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	4.87161736542381	4.99059974457181	5.08155603619301	4.6940744967393	4.91319222230687	5.31561074241072	5.08803732973729	5.01217149693984	0.353269223441981	0.278619002988161	0.590830662387366
Merged-chr2-91335399-4	chr2	91335297	91335497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 3 of 8)	intron (NM_175123, intron 3 of 8)	70282.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	6.24097513776967	6.56089529765534	6.72415441272082	6.52457316833679	6.77312494213149	6.6309792377979	6.98062751899891	6.50134002015972	0.304933666807209	0.177805185305408	0.473457606705834
Merged-chr7-123084978-4	chr7	123084879	123085079	+	760.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38906.0	NM_144925	233833.0	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	4.03274650450015	4.11196244509274	3.56856968224431	3.88467837680565	4.11244112941874	4.1580759179951	4.39107636980099	4.29552488420332	0.843702651254897	0.0529639941509055	0.240046108861337
Merged-chr12-36217115-4	chr12	36216989	36217189	+	762.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361098, intron 5 of 8)	intron (NM_001361098, intron 5 of 8)	1129.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	3.70114860195819	3.7898485391139	3.7016417256912	3.93974729511798	3.77914966042254	3.87372640126196	3.7402275895882	3.9012629473133	0.0667776682497046	0.882456731853335	0.95575354370667
Merged-chr7-44124046-1	chr7	44123946	44124146	+	565.0	f0_balb.idr	Intergenic	RLTR45|LTR|ERVK	11373.0	NM_010114	13646.0	Mm.5193	NM_010114	ENSMUSG00000060177	Klk1b22	EGF-BP A|Egfbp-1|Egfbp1|Klk22|mGk-22	kallikrein 1-related peptidase b22	protein-coding	3.38215149038476	3.15591256136115	3.61775502714587	3.29170130882449	3.01274940639235	3.20548399153426	2.94986500996396	3.0925434877535	-1.18953926584375	0.0423332969572884	0.208803391596066
Merged-chr17-66519795-4	chr17	66519725	66519925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024448)	promoter-TSS (NM_024448)	-155.0	NM_024448	19328.0	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	6.78814237321521	6.94039602546347	6.58929339138128	6.98857890443688	6.81294936348966	6.73307753948473	6.90171078704893	6.85366933706601	-0.0306563385833858	0.881133933253671	0.955322489265647
Merged-chr19-56387955-4	chr19	56387867	56388067	+	946.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198059, intron 3 of 40)	intron (NM_198059, intron 3 of 40)	2071.0	NM_198059	18175.0	Mm.386769	NM_008733	ENSMUSG00000049134	Nrap	-	nebulin-related anchoring protein	protein-coding	5.36614598087927	5.11450680976788	5.46786887718624	5.42258041077419	4.45143989015293	4.8267659921303	4.87161266304436	4.81340009613265	-1.20767727749631	0.000263910926317026	0.00456055251865005
Merged-chr2-160288103-1	chr2	160288003	160288203	+	863.3333130000001	f0_balb.idr	Intergenic	Intergenic	39391.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	3.42710316960344	3.0506349647384	3.42762006244262	3.56347511276671	3.01110136485583	2.83272095489736	3.20115281291385	3.15190475573982	-1.28695722301986	0.0365657438097442	0.190326367724591
Merged-chr6-83689590-4	chr6	83689508	83689708	+	934.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11751.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	4.42375289486318	5.04609628613098	5.34554382385652	4.94490595454217	4.87741034746019	4.82942847494577	4.67190778527212	4.31864713286184	-0.57517537913183	0.147508394417623	0.428647287497111
Merged-chr3-88654867-3	chr3	88654772	88654972	+	861.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1730.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	3.96095840646112	3.42872193832954	3.41227299846578	3.1653902755558	3.05160520931367	3.47085565667527	3.28059743290104	3.41036348446305	-0.725469320325157	0.217170435426712	0.523995275425022
Merged-chr18-78161563-4	chr18	78161442	78161642	+	793.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207651, intron 13 of 21)	intron (NM_207651, intron 13 of 21)	17630.0	NM_001110273	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	3.9257925073237	4.21060555715069	4.27547702590954	4.08357760239424	4.22824524239267	4.60754738613012	4.29875374978301	4.22834327573939	0.532723788677605	0.185540052913283	0.483505130833902
Merged-chr6-113330805-4	chr6	113330754	113330954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010957, intron 3 of 6)	ORR1A4|LTR|ERVL-MaLR	3878.0	NM_010957	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	5.72481277010124	5.57873188532365	4.86916485249367	5.4318211449613	5.57487273309016	5.52853652230429	5.86776026592745	5.37888072084444	0.275455101595758	0.388300844219835	0.688939273910057
Merged-chr13-56633896-3	chr13	56633774	56633974	+	708.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 12 of 16)	intron (NR_155548, intron 12 of 16)	24288.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	3.776008215295	3.44801239994372	3.68494266507734	3.49942540673522	3.16171457103568	3.34727607036988	3.46523346983219	3.5315545438081	-0.76781084240457	0.145257443180861	0.424703750063573
Merged-chr7-67526083-4	chr7	67525992	67526192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028144, intron 8 of 8)	MER21B|LTR|ERVL	119144.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	6.65168481306783	6.87861135154332	6.62510301863415	6.61046786790792	5.59721701979437	5.58604711584162	5.60278685443527	5.9264344071635	-1.56145765443212	1.25760519418924e-10	9.48252967343174e-09
Merged-chr16-21400116-4	chr16	21400026	21400226	+	933.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22992.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	5.37142045223223	5.22003511120964	4.88217704367875	5.19327750736413	5.21319082318546	5.24194387029377	5.07658629918614	5.13099193174032	-0.021983570445745	0.942402861122221	0.979088236393896
Merged-chr17-12135199-4	chr17	12135168	12135368	+	967.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026644, intron 1 of 8)	intron (NM_026644, intron 1 of 8)	15984.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	3.9642262131856	4.10770243871431	4.74897415931142	4.61684210637924	4.21900188360956	4.14935409842956	4.78817546423434	4.53372694817131	0.092852601638898	0.839158365321933	0.938895262970456
Merged-chr14-66250349-3	chr14	66250261	66250461	+	908.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	30691.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	3.75441437586312	3.52268498397106	3.65032862640682	3.92117482642687	3.83137142806081	3.76679599171655	3.58167264979895	3.80194547059918	0.0536826869470421	0.910395854767769	0.966675118169837
Merged-chr11-51582937-4	chr11	51582886	51583086	+	834.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153393, exon 29 of 29)	3' UTR (NM_153393, exon 29 of 29)	-1771.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	4.04277241205348	4.24277518384207	3.72339635602016	3.6867143990899	3.93021841931557	4.16804224903276	4.15878030290672	4.13206284711756	0.427715088358693	0.342563811162451	0.651595347925821
Merged-chr8-70354205-4	chr8	70354110	70354310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122829)	promoter-TSS (NM_001122829)	-931.0	NM_001122829	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	5.41205547666121	5.44923480030397	5.41298919141839	5.15011696260556	5.68522830460673	5.1897569595484	5.62061781895124	5.51966934407103	0.315423217852935	0.279030123156882	0.591244496790418
Merged-chr11-84916393-4	chr11	84916293	84916493	+	974.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005223)	promoter-TSS (NM_001005223)	-27.0	NM_001005223	448850.0	Mm.379733	NM_001005223	ENSMUSG00000020526	Znhit3	Myohd1|TRIP-3|Trip3	zinc finger, HIT type 3	protein-coding	6.04832450784604	5.74206064794282	5.30841396111763	5.21725038015404	6.07234679442588	5.90686421112352	5.17862529326916	5.46200473903669	0.155601474548016	0.660761048355118	0.859037637641442
Merged-chr14-34310511-4	chr14	34310424	34310624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008133)	promoter-TSS (NM_008133)	-7.0	NM_001360074	75698.0	Mm.45406	NM_029389	ENSMUSG00000041471	Fam35a	3110001K24Rik	family with sequence similarity 35, member A	protein-coding	8.83260550651335	8.9666335014653	9.02817728947844	8.91623653349846	8.83972440831022	8.91710941916154	8.8783951893517	8.6172787774718	-0.148384542930015	0.319977918669696	0.631798615023725
Merged-chr10-86781220-4	chr10	86781138	86781338	+	853.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175331, intron 1 of 13)	intron (NM_175331, intron 1 of 13)	2233.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	4.23366462182415	4.17783909406668	4.18852529844253	4.57765552919161	3.9515505814894	4.11081101802001	4.34247848723554	4.31848365579942	-0.341292117317586	0.41777441842333	0.711469226750822
Merged-chr10-62324046-4	chr10	62323925	62324125	+	971.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 4 of 21)	Lx5b|LINE|L1	16396.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	4.42133210962109	5.01490652014807	4.81725735728929	4.82943898450059	4.96585189154839	4.83352217951506	5.12320484370949	5.11586787883009	0.437138859902953	0.199544813072561	0.501474545095065
Merged-chr11-79060131-3	chr11	79060048	79060248	+	878.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348207)	promoter-TSS (NM_001348207)	-312.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	2.60886628797066	2.73514479070902	2.52896311001743	2.5663850588775	3.44532250215173	3.1829294614353	2.94102623936328	2.95100724713935	2.44666924584605	0.00023768954041228	0.0041887852926481
Merged-chr6-125039705-4	chr6	125039599	125039799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133345)	promoter-TSS (NM_133345)	-149.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	7.81767068676572	7.96207314161493	7.43389262576713	7.46932119847995	8.02832907644596	7.91873384109305	7.66297145277919	7.88679620672092	0.257353280309313	0.195497310971711	0.496354667296431
Merged-chr19-4121186-4	chr19	4121080	4121280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016666, intron 2 of 6)	intron (NM_016666, intron 2 of 6)	395.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	5.83433414616338	6.08310916686097	5.55002383317004	5.94243480214246	6.53999390732905	6.68758080307249	6.05887071079565	6.29770317995128	0.83078739662577	0.00170247526161539	0.0206089263004288
Merged-chr14-57713023-4	chr14	57712918	57713118	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015771, intron 2 of 7)	intron (NM_015771, intron 2 of 7)	21400.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	4.87417851015837	4.85927458438952	5.38352347644939	5.54993823996471	4.89418555022654	4.54821101533529	5.35618025271304	5.15101703203831	-0.364408829102953	0.341193781650723	0.650275314861081
Merged-chr1-92052429-4	chr1	92052316	92052516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 3 of 26)	intron (NM_207225, intron 3 of 26)	127925.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	6.40361358747528	6.37392040244883	6.4707394885364	6.84900123557517	5.97134381761555	5.9361610820684	5.90847605736597	6.21830673576167	-0.821400541354646	0.000893553759505133	0.0123188578438535
Merged-chr11-63952246-4	chr11	63952171	63952371	+	742.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-11955.0	NR_131111	78883.0	Mm.410764	NR_131111	ENSMUSG00000086359	9630013K17Rik	-	RIKEN cDNA 9630013K17 gene	ncRNA	4.15161071392827	3.77096509680624	3.8759710738482	3.55255684040325	3.86788401880145	3.71010637931426	4.09120639693936	4.22955277107927	0.404261258830739	0.39630146872177	0.69519327480908
Merged-chr3-53448437-4	chr3	53448352	53448552	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14806.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	4.36736489549053	4.40155602483061	4.27872380137472	4.57765011643587	4.62264629985256	4.14837164807622	4.30516893755219	4.36531512022846	-0.0887566161651153	0.821774575523374	0.931891561451028
Merged-chr5-74126684-4	chr5	74126597	74126797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33167.0	NR_031758	100313943.0	Mm.46547	NR_031758	ENSMUSG00000093355	Snora26	MBI-6	small nucleolar RNA, H/ACA box 26	snoRNA	7.3511277039514	7.31443399044598	7.64117894320421	7.82845892940073	6.3095847153332	7.0866716577775	7.00542402110999	6.95805338365196	-0.945259709138619	0.000105799386654844	0.00212911918086094
Merged-chr1-134967876-3	chr1	134967808	134968008	+	771.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026024, intron 2 of 6)	intron (NM_026024, intron 2 of 6)	5343.0	NM_001278115	67196.0	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	3.45441143671458	3.22915139909223	3.40047902993617	3.32075267312763	3.36349474515303	3.19876061616239	3.44093053754658	3.64947724883495	0.253424829685803	0.62815653619645	0.841427212108636
Merged-chr5-117373619-4	chr5	117373503	117373703	+	955.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021539, intron 4 of 8)	intron (NM_021539, intron 4 of 8)	15420.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	5.80998920639565	5.53363977205035	6.16548490266387	5.58351891067839	5.60625727037975	5.13126249812493	5.11762154349967	4.90044080719897	-0.966056648639207	0.00431710953737675	0.0425370348506284
Merged-chr18-60525439-2	chr18	60525393	60525593	+	894.916626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357462)	promoter-TSS (NM_001357462)	-661.0	NM_026302	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	3.35825310973593	3.1314528856392	3.19988251717948	2.92212726382427	3.17710214373447	3.31299328196108	2.80193667874075	3.01719255423764	-0.25133554126163	0.681497909614211	0.869418570248233
Merged-chr8-91082604-2	chr8	91082514	91082714	+	911.0	f0_balb.idr|f1_balb.idr	intron (NM_001282000, intron 4 of 20)	intron (NM_001282000, intron 4 of 20)	12557.0	NM_001282000	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	4.16582096987231	4.58168236157323	4.67532531415271	3.9823658629167	3.78020163139894	3.74281362988497	3.60750711171428	3.91851971319314	-1.6528096508082	0.000734222096382502	0.0105183522077774
Merged-chr11-106158309-3	chr11	106158209	106158409	+	862.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356459, exon 5 of 5)	3' UTR (NM_001356459, exon 5 of 5)	1618.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	3.28826189497362	3.29267588567694	3.72749060211723	3.00833585107534	3.69770840075991	3.53001020700406	3.51188712541102	3.77069788950571	0.961491987175844	0.0797763940642048	0.305800202116217
Merged-chr10-99267730-3	chr10	99267644	99267844	+	593.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026268)	TTS (NM_026268)	4513.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	3.06160704212924	2.94297738324011	3.06205603777394	2.76290296064762	2.55753952970867	2.79332500702759	2.74810629381763	3.00475596997928	-0.811497062930845	0.21877969439244	0.526098644160793
Merged-chr3-108200568-4	chr3	108200582	108200782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081320, exon 1 of 3)	exon (NM_001081320, exon 1 of 3)	152.0	NM_028061	72023.0	Mm.246391	NM_028061	ENSMUSG00000048796	Cyb561d1	1600010M23Rik|AI605489|AW457162	cytochrome b-561 domain containing 1	protein-coding	6.94223671173901	7.1972646007674	7.60679400753774	7.17412121585039	7.11330593164605	7.27373575035778	7.31264863461364	7.38317170259681	0.0286070709406918	0.891694725461581	0.959472066794561
Merged-chr7-139247289-1	chr7	139247189	139247389	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-1193.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	3.58908094313886	3.56328050589275	3.46904667608236	3.70230843357723	4.00677441447972	3.6470440658202	3.83293860331957	3.98091352295176	0.846454189292952	0.0723173055021712	0.288979219941694
Merged-chr7-19321605-4	chr7	19321496	19321696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-11551.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	8.46971928086995	8.68194262515322	8.61207687950597	8.36358306866598	8.81478452677245	8.87881318247188	8.78321855537424	8.72068447505111	0.33522144931427	0.0291676482802717	0.164192985780197
Merged-chr2-124741113-3	chr2	124741008	124741208	+	961.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87527.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.39310844441802	4.24643013184099	4.55208947733319	4.92688479219944	4.09771497364425	4.18466306013907	4.3313508362239	4.11000308027469	-0.938802586367297	0.0254219214794975	0.150241360759644
Merged-chr8-20550553-1	chr8	20550453	20550653	+	1000.0	f0_c57.idr	Intergenic	CpG	-64374.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	3.89912510933372	3.98217636367727	3.78032236458959	3.21710360261585	4.47164409155122	4.69685887423827	4.46807387969846	4.41242501004608	2.03479078214405	1.57749250262178e-05	0.000414333353668323
Merged-chr2-91204846-4	chr2	91204739	91204939	+	918.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357067, intron 3 of 10)	intron (NM_001357067, intron 3 of 10)	1927.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	4.2509798439867	4.37623056565147	4.38398292921998	4.37437864879872	4.37433421437335	4.22939394442738	4.62501890427065	4.1018190749642	0.00176912151062052	0.996392249443012	0.998602617451138
Merged-chr17-35044679-2	chr17	35044578	35044778	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013600, intron 4 of 23)	intron (NM_013600, intron 4 of 23)	1944.0	NM_013600	17687.0	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	2.52655913910163	2.85911667288808	2.7381092044378	2.48621100881153	2.85319698334629	2.84559760572413	2.90835941557888	2.86082379474496	1.00969653502257	0.118079887716993	0.380136061863764
Merged-chr12-111040035-4	chr12	111039890	111040090	+	910.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198023, exon 2 of 12)	exon (NM_198023, exon 2 of 12)	192.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	4.50107158838997	3.89536775336156	4.42253005288122	4.19806657426518	4.41285004181693	4.55258748107945	4.22888368197301	4.45986825281811	0.360444098992627	0.374776551697826	0.677891254741963
Merged-chr7-64374076-4	chr7	64373968	64374168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177893)	promoter-TSS (NM_177893)	27.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	7.63741499642143	7.91459580507465	7.76260303963103	7.98509943590709	7.59053795797669	7.75396160321197	7.96647650010399	7.48633707356831	-0.169173433638328	0.371998773408154	0.675954781283034
Merged-chr2-11503286-4	chr2	11503190	11503390	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	CpG	-1200.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	5.6044457531726	5.4116845316525	5.83707810257963	5.88124061014941	5.15645931812211	5.01150641724329	5.41540849583136	5.65129853139333	-0.650969929857265	0.0351029269600828	0.185610018804765
Merged-chr17-31519565-1	chr17	31519465	31519665	+	1000.0	f1_balb.idr	promoter-TSS (NM_030087)	promoter-TSS (NM_030087)	-550.0	NM_030087	78330.0	Mm.28349	NM_030087	ENSMUSG00000024038	Ndufv3	1500032D16Rik	NADH dehydrogenase (ubiquinone) flavoprotein 3	protein-coding	3.50410187041619	3.69953377731657	3.50456453535759	3.19355553442581	3.54077541901612	3.49801648617158	3.84602827207186	4.066953282745	0.864726670528447	0.0978081392646393	0.34264620261432
Merged-chr13-37893816-1	chr13	37893716	37893916	+	610.666687	f0_balb.idr	non-coding (NR_033615, exon 4 of 10)	non-coding (NR_033615, exon 4 of 10)	4945.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.04927589507547	2.89422168527971	3.16015779759164	3.19125203330141	2.99815741958131	2.96982672475841	2.78776835896111	2.9273335964853	-0.672244945675882	0.266656510600283	0.578316385375306
Merged-chr17-17896210-4	chr17	17896127	17896327	+	992.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8403.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	4.77422759475462	4.79228143904717	4.86066402077578	5.03685807180434	5.55407297540274	5.48654710453417	5.47446207380122	5.72780206615004	1.22882548135752	5.04860684207717e-05	0.00114153362900957
Merged-chr2-144217441-4	chr2	144217342	144217542	+	941.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28152.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	4.55092005081356	4.71759957320857	4.5926937511292	4.43743704227331	4.78537777314435	4.64061680741112	4.48894747621215	4.77698499955928	0.248541947774785	0.480037177547929	0.75564081252342
Merged-chr11-83648432-4	chr11	83648338	83648538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011337, intron 2 of 2)	intron (NM_011337, intron 2 of 2)	940.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	6.22991669012973	6.27874173056402	5.93289037625407	5.98598764317805	6.27811119543276	6.42469748897061	6.19911375004493	6.12803979208848	0.233377131657598	0.32282333736052	0.634284989924212
Merged-chr7-66121223-4	chr7	66121126	66121326	+	807.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 1 of 2)	intron (NM_001081163, intron 1 of 2)	11711.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	4.27778679182829	4.0595962177342	4.06491487525676	3.84389659963901	4.00182692041978	4.0902807700364	3.95142688003296	4.06245676283013	-0.0810858979986068	0.849502269631978	0.943128665229694
Merged-chr1-191718148-7	chr1	191718068	191718268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134829)	promoter-TSS (NM_001134829)	144.0	NM_172266	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	4.63062789775116	4.31930160190138	4.63136599373408	4.90743679683664	4.76885869294915	4.63595356848644	4.82943197367828	4.81536104323953	0.227146454729754	0.533939880649944	0.789042708189764
Merged-chr18-82913233-4	chr18	82913091	82913291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183033, intron 1 of 5)	intron (NM_183033, intron 1 of 5)	-1441.0	NM_001177464	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	6.95235602048743	6.89617691815342	6.62869818043307	6.77379990260961	7.05278775372401	7.33366963125457	7.26684156355657	7.19578283272878	0.543868389214956	0.00539364971557132	0.0502399038125195
Merged-chr1-45872389-4	chr1	45872271	45872471	+	768.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53223.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	3.27562326355114	3.00657463845051	3.05377449059356	3.09857797804388	3.05718543198173	3.09995896636892	3.04302568716674	2.99026555571199	-0.253937807428677	0.654727241492463	0.855710147117975
Merged-chr5-99250485-2	chr5	99250390	99250590	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	2437.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.71822210251653	5.17773401426395	5.01674828557667	4.53398572830698	4.60250916907253	5.0518408873573	5.02456794059814	5.33362001865834	0.286114273687732	0.445461358150683	0.731480702512456
Merged-chr11-106302823-4	chr11	106302710	106302910	+	866.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008117)	promoter-TSS (NM_008117)	-914.0	NM_008117	14599.0	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	4.97838952042907	4.6618249267209	3.98058568723594	4.4093564406433	4.71929347179333	5.02265528690823	4.68833079129656	4.5490534587285	0.430740906889955	0.305170617220259	0.617656374065083
Merged-chr9-72957511-3	chr9	72957408	72957608	+	717.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1277.0	NM_026314	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	3.62641185737752	3.48524729609256	3.29459125276332	3.48753593754553	3.59376030572556	3.58612077575304	3.3444333588823	3.41335663928164	0.0438311184903376	0.930875484963318	0.975182664569932
Merged-chr18-76241353-4	chr18	76241234	76241434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010754)	promoter-TSS (NM_010754)	-367.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	7.49708474019877	7.47511071895441	7.6477611448724	7.36331293914108	8.28300505156345	8.27240602937162	8.3645690177217	8.08303534527096	0.991596363192376	3.34646394252017e-09	1.94924678367138e-07
Merged-chr17-28702869-4	chr17	28702779	28702979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	10311.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	5.99742289632843	5.92485710811624	6.22237016680588	6.29554881537406	5.4066989849334	5.42148088398165	5.31805741511628	5.64309054067863	-1.11720857332346	2.91483702612082e-05	0.000708590111619719
Merged-chr9-99138515-2	chr9	99138415	99138615	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 1 of 23)	intron (NM_029094, intron 1 of 23)	1696.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	3.52067717821784	3.28949549913954	3.19766857428215	3.00467505612324	3.49993854290763	3.31006201862711	3.24534075550915	3.06776426015974	0.138654927356185	0.809191409384155	0.926362488588753
Merged-chr15-57977025-3	chr15	57976928	57977128	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8875.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	3.79100287361246	3.84255505888751	3.3948644960396	3.6527249913891	3.77123227789605	3.86069474738099	3.67517078163331	3.687892176855	0.208478847620141	0.660200460137839	0.858753368191481
Merged-chr3-37140338-4	chr3	37140241	37140441	+	946.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA9|LINE|L1	-14387.0	NM_008366	16183.0	Mm.14190	NM_008366	ENSMUSG00000027720	Il2	Il-2	interleukin 2	protein-coding	4.61591974385366	4.26552652570689	4.95915078293615	4.90549969309857	4.37481332194892	4.48595990147388	4.67072108877165	4.48992746748137	-0.4729750904038	0.224433298499565	0.532782075570323
Merged-chr8-39650172-4	chr8	39650054	39650254	+	993.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7476.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	6.60873797854704	6.52617924800767	6.29379590876559	6.52131193697732	5.99855400159046	5.97265642692696	5.78960217689779	5.4908037609385	-1.01429295048092	4.99739311258682e-05	0.00113103161958924
Merged-chr16-33793358-3	chr16	33793241	33793441	+	917.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010739)	promoter-TSS (NM_010739)	-696.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	3.57223748607557	3.39421767646187	3.34232633726227	3.76520893798395	3.47271768951351	3.57709355299988	3.55845470982412	3.67192690864078	0.0784410763345414	0.877800723051495	0.954314763971155
Merged-chr1-58734225-4	chr1	58734137	58734337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 4 of 8)	intron (NM_001355056, intron 4 of 8)	3685.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	6.11757215420403	6.23557557220904	5.85807914740017	5.95278368567085	6.09057123446789	5.88228075255497	5.96450434340804	5.77952490717731	-0.162608299340929	0.514436484765273	0.77702014958318
Merged-chr10-98782187-2	chr10	98782087	98782287	+	924.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132455.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	2.80480533464772	3.15544558250694	2.86614264117876	2.72696798481511	2.38660811381545	2.63422374742991	2.73186694278221	2.80372358676779	-1.251975998487	0.0810279371711498	0.308801603036102
Merged-chr8-25200530-4	chr8	25200452	25200652	+	780.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177089, intron 1 of 12)	intron (NM_177089, intron 1 of 12)	990.0	NM_199323	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	2.70446246034345	2.88768206257295	2.63592727226928	2.89633042928974	2.67803127106755	2.87582488693181	2.88082478684976	2.83100489656229	0.0993030090655184	0.875891214916101	0.953361278178961
Merged-chr9-78471221-2	chr9	78471117	78471317	+	943.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026658, intron 11 of 11)	B2_Mm1a|SINE|B2	10507.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	3.51909748635597	3.23412224254005	3.36387105895614	2.57795195454496	3.44802646907316	3.3023734868469	3.34977945207193	3.24682368338501	0.385982755585678	0.564585943490888	0.806831490357732
Merged-chr1-153543678-3	chr1	153543579	153543779	+	860.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028749, intron 2 of 11)	intron (NM_028749, intron 2 of 11)	6035.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	4.22750020614897	4.24313373907822	4.39666034999047	4.68011729324061	4.02929649282656	4.15826239028257	4.16415617836577	3.92300823251438	-0.870758828237321	0.0377944264036982	0.194381507240765
Merged-chr3-123386982-3	chr3	123386872	123387072	+	877.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201638)	promoter-TSS (NM_201638)	-982.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	2.81471684834181	2.86079576166476	2.81500389816895	2.57297536819083	3.39917382678251	3.52764412014487	3.01076335808539	3.30685424854836	2.42829506384022	7.32199824914133e-05	0.00155992970181272
Merged-chr11-47075278-3	chr11	47075129	47075329	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 6 of 7)	intron (NM_011891, intron 6 of 7)	264430.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	3.25192213989309	3.24820455602767	3.42171590701765	3.36633104841067	3.44528521536477	3.16675603947847	3.55539980528276	3.25072240248101	0.14916510424857	0.779002104946263	0.913809930096951
Merged-chr7-133115154-3	chr7	133115059	133115259	+	726.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 1 of 10)	intron (NM_009980, intron 1 of 10)	8324.0	NM_009980	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	3.1834065893333	3.74180508094692	3.43763449643831	3.42935551775313	3.6154040030906	3.4924357256107	3.53410050875295	3.64808382327539	0.360308778620623	0.483874776674809	0.758110601328085
Merged-chr10-80702622-4	chr10	80702515	80702715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027829)	promoter-TSS (NM_027829)	-78.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	7.28957451030727	7.41223016659551	7.20434036173803	7.14808605861421	7.16263489541028	7.4465535661524	7.23346590924114	7.18806230572974	-0.00691520220753006	0.970485024939192	0.989436241028349
Merged-chr14-14552341-4	chr14	14552248	14552448	+	897.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-150677.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	3.67984257492199	4.06047717437514	4.77695240190613	4.14948975103313	3.83650820035334	3.80254918546294	3.8978472112522	4.1554967828122	-0.767663165980179	0.12778791008881	0.397718218286463
Merged-chr10-117872797-4	chr10	117872709	117872909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26835.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	5.61026756636443	5.62465818875816	6.1044445998126	6.00460946062822	5.95325718266495	5.41346175819454	5.5273506773917	5.80954989999601	-0.253371467412273	0.384387073975087	0.685951673034199
Merged-chr19-4145145-4	chr19	4145043	4145243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_206973, exon 2 of 2)	3' UTR (NM_206973, exon 2 of 2)	-3520.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	6.2772907618771	5.85472207167062	6.18545107347852	5.99902863181851	6.21249015452645	6.30140648882308	5.77623323792878	6.27390246603752	0.120135168665715	0.637427919036077	0.84676723244875
Merged-chr16-27376757-4	chr16	27376654	27376854	+	946.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6515.0	NM_198166	224065.0	Mm.326918	NM_198166	ENSMUSG00000056423	Uts2b	Gm538|U2B|Urp|Uts2d	urotensin 2B	protein-coding	4.76811088453471	4.7954481399591	4.2985195141251	4.77186086261448	4.90273361395022	4.52793584604825	4.78108849999351	4.48704208497354	0.0308924312977765	0.933923502082031	0.976191916746654
Merged-chr5-24878036-4	chr5	24877938	24878138	+	961.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 8 of 15)	intron (NM_145401, intron 8 of 15)	-24531.0	NR_040684	71161.0	Mm.443533	NR_040684	ENSMUSG00000086446	Prkag2os1	4933426D04Rik	protein kinase, AMP-activated, gamma 2 non-catalytic subunit, opposite strand 1	ncRNA	5.09573504069176	4.49167807449746	5.32667556258183	5.5505610543439	4.72405346651968	4.48329508053613	5.13237193468808	4.88822200797266	-0.688773869857861	0.0884714929329604	0.324553006617693
Merged-chr5-129594359-3	chr5	129594243	129594443	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011846, intron 1 of 9)	intron (NM_011846, intron 1 of 9)	10174.0	NM_011846	23948.0	Mm.42047	NM_011846	ENSMUSG00000029436	Mmp17	MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding	3.09811415115181	3.15944414544193	3.16056389799479	3.25996182845565	3.18802915949939	3.44394731921824	3.2078774769185	3.21816620697138	0.326527386574762	0.546552220119219	0.796426402355639
Merged-chr16-77034866-4	chr16	77034754	77034954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 2 of 23)	MIR|SINE|MIR	20785.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	5.98397086643103	5.85831446890432	6.0282878424223	6.35945913796141	5.90209083767169	5.94706458427626	6.1561117858711	5.88959632554462	-0.179535508107157	0.486475639120136	0.760181214838873
Merged-chr6-82042906-3	chr6	82042747	82042947	+	647.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	1219.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	2.77403410537216	2.71690441270295	2.82928098207377	2.78361541537577	2.39194366419257	2.40774335486406	2.3788123203478	2.38352642356069	-2.36233420703747	0.0026482261357396	0.0289997058639707
Merged-chr5-103472886-4	chr5	103472789	103472989	+	938.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011204, intron 2 of 47)	intron (NM_011204, intron 2 of 47)	47697.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	4.70378218905962	4.72850803174535	4.39768559107349	5.09381075300016	5.03425520240498	4.52849305499774	4.79357626414815	4.73987547458767	0.0420020394804958	0.912622637291513	0.967264759221129
Merged-chr2-58281284-3	chr2	58281183	58281383	+	944.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040365, exon 3 of 4)	non-coding (NR_040365, exon 3 of 4)	4504.0	NR_040365	100502932.0	Mm.417207	NR_040365	ENSMUSG00000086995	Gm13544	-	predicted gene 13544	ncRNA	4.32554617426429	4.02148131208168	4.52319248252747	4.89865820067362	3.75664763783211	4.11286927596301	4.07607113988171	4.23538733498829	-1.10287723287762	0.0174157670856212	0.116594891402128
Merged-chr8-25440542-3	chr8	25440353	25440553	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78306.0	NM_001079909	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	2.78564607949435	2.51506916650596	2.78608007695447	2.30605948814511	2.18949987912911	2.5062448770737	2.39263739783749	2.66784180926002	-0.873993892731618	0.264842323573522	0.576666006412963
Merged-chr11-95001273-4	chr11	95001132	95001332	+	701.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172261, exon 5 of 10)	exon (NM_172261, exon 5 of 10)	-8647.0	NM_146025	217125.0	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	3.34811293555601	3.42168860092392	3.56269447230909	3.30060090712598	3.17134637182974	3.46259999904061	3.49772030132476	3.34679653891334	-0.127271378174527	0.808070541051783	0.925956711391807
Merged-chr11-53820858-3	chr11	53820752	53820952	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 2 of 3)	intron (NR_033332, intron 2 of 3)	38404.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	4.15600772290337	4.61611546252599	4.09605844282767	3.43810864595443	5.80356767216826	4.87506266312664	5.07842880729612	5.21388265431396	2.42052268907441	1.92361458104746e-07	7.78402286892421e-06
Merged-chr11-97946078-4	chr11	97945996	97946196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163608, intron 7 of 13)	MTD|LTR|ERVL-MaLR	40350.0	NM_028199	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	6.12242111078021	5.94258041127233	5.44356403210318	6.00711438407256	6.570599666907	6.14982137949967	6.29635089293578	6.28944985536579	0.664786624471348	0.0115125958593234	0.0871853453208618
Merged-chr15-3213934-3	chr15	3213835	3214035	+	754.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56832.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	4.24169950007224	4.05866286813883	3.97795555321382	3.79813809650601	3.7451258084513	3.8865137880738	4.00849650508888	4.15758542336514	-0.176453642998279	0.694136147435114	0.87574740044461
Merged-chr8-83141512-4	chr8	83141435	83141635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23817.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	6.96750149136319	7.06262630822591	6.79047817675301	6.78821707642593	6.41048337478643	6.49216905538795	6.24089765367225	6.44158613122879	-0.726745166305616	0.00059272996591501	0.00885598787654586
Merged-chr10-60760625-4	chr10	60760540	60760740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7858.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	5.71297587180822	5.55650808968112	5.12559115965924	5.69193758226521	6.22342639365029	5.64574046441981	5.7568730032304	5.80549740334166	0.556580406768066	0.0616306380582993	0.262683065050999
Merged-chr10-111972656-4	chr10	111972550	111972750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178610)	promoter-TSS (NM_178610)	-45.0	NM_178610	52705.0	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	8.40670000293828	8.45643232154783	8.3549608882881	8.53200759368681	8.31780067353722	8.32670867410163	8.60450874595679	8.15005177151667	-0.104587211015828	0.527515559407381	0.784391359816541
Merged-chr6-82797607-4	chr6	82797498	82797698	+	975.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23144.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	4.80619173702372	4.85843512163477	4.84231209479513	4.54997940256725	4.75449207995723	4.86788529294785	4.50760709254647	4.69162272893609	-0.0933998904319264	0.788700383863359	0.91812687233996
Merged-chr10-111439678-3	chr10	111439591	111439791	+	915.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BC1_Mm|scRNA|scRNA	-33536.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	3.57588962560861	3.45326568919431	3.63278055497866	4.11660388920554	3.54545916069283	3.90848606913452	3.67206240193049	3.73662332433225	-0.0649900385186538	0.901066735480178	0.963342914941175
Merged-chr14-26626805-4	chr14	26626711	26626911	+	984.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285467, intron 16 of 19)	intron (NM_001285467, intron 16 of 19)	-11323.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	5.23739856312505	5.31081568361322	5.59677776933071	5.78098340172571	5.21616144965051	5.24581669424073	5.18048452371233	4.95082223029055	-0.652765088732242	0.0363443130784458	0.189601383333662
Merged-chr5-135144437-4	chr5	135144335	135144535	+	834.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5276.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	4.08349415617862	3.74101753930751	4.33803238553206	4.20145789340247	3.99377014470216	3.94690262668965	4.11190524107665	4.17193680787585	-0.140052584931691	0.748696332382602	0.90106109332738
Merged-chr14-70549439-4	chr14	70549341	70549541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_180588)	TTS (NM_180588)	4190.0	NM_180588	72549.0	Mm.46742	NM_180588	ENSMUSG00000033589	Reep4	2700029E10Rik	receptor accessory protein 4	protein-coding	5.46888256167435	5.23896088865654	4.9667711715224	5.27491807950036	5.30967243503604	5.32125903492646	5.24766619359689	5.23944075311985	0.0536087652487988	0.855991857275068	0.945801681068115
Merged-chr1-51476260-2	chr1	51476160	51476360	+	776.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_028696, intron 2 of 5)	intron (NM_028696, intron 2 of 5)	2139.0	NM_001310548	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	3.88801016944891	4.15653595949496	3.93865210290751	3.66189356380381	3.90528664215794	4.24675954992881	3.76735903619205	3.83430669178329	0.0943079384789021	0.838590753094919	0.9387708599746
Merged-chr13-21750578-4	chr13	21750469	21750669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178211)	promoter-TSS (NM_178211)	-16.0	NM_178211	319160.0	Mm.255646	NM_178211	ENSMUSG00000064288	Hist1h4k	-	histone cluster 1, H4k	protein-coding	5.26302297877634	5.2399041594986	5.23169738467236	5.23228999578834	5.42357056785803	5.66829582399324	5.54470960860406	5.35224708257008	0.456648464880122	0.100566950533566	0.348113357585407
Merged-chr8-95887863-2	chr8	95887739	95887939	+	638.833374	f0_balb.idr|f0_c57.idr	intron (NM_010325, intron 1 of 9)	intron (NM_010325, intron 1 of 9)	526.0	NM_010325	14719.0	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	4.07433302452212	4.03141772079038	4.51109388716728	3.75962527441636	4.15187279968401	3.68095766023197	4.05711085542171	4.20701278195949	-0.18230996683469	0.702689713167061	0.880373386414042
Merged-chr11-32560602-4	chr11	32560507	32560707	+	980.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	27341.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	6.10679346988864	6.01180199864539	6.86694575717426	6.78549018437915	5.67149176974522	5.30271371831983	5.90189653992162	5.83067957699679	-1.2553197253642	5.95857699157438e-05	0.00131308220335379
Merged-chr19-10697409-2	chr19	10697309	10697509	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	L1MEc|LINE|L1	-3359.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	3.53140808598056	3.98005615137095	3.89337163682015	3.0832408256794	3.43706078416128	3.8208580237334	3.78297209895924	3.64363188519845	0.0269943850861567	0.961964939572118	0.986353915121276
Merged-chr15-12377024-3	chr15	12376954	12377154	+	867.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081064, intron 18 of 23)	intron (NM_001081064, intron 18 of 23)	55558.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	3.44232961330304	3.52532424257784	3.76422007648421	3.68806533475968	3.41391322255195	3.93134295409206	3.43043976846475	3.6114115719376	-0.022095768099976	0.965359603945715	0.987743024598971
Merged-chr19-37206890-6	chr19	37206803	37207003	+	973.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164337)	promoter-TSS (NM_001164337)	568.0	NM_198300	208922.0	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	3.8433214529667	4.15100111791589	4.06312248382632	4.3036828473349	4.33391916284637	4.28654197093995	3.94226515053796	4.62262870269692	0.503293072433563	0.252605169482275	0.563854219724625
Merged-chr6-37430078-4	chr6	37430003	37430203	+	823.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	12045.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	4.10650491401967	4.0628470314607	4.15296957611	4.62517843392852	4.13519530871176	3.91227611527792	4.08938001018379	3.78975104606157	-0.727485730863551	0.110007566069758	0.366275074622478
Merged-chr1-77516394-4	chr1	77516297	77516497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1309.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	5.52419373610301	5.51783085969973	5.60374395702696	5.91644378836886	5.10283270366221	5.18010796700978	5.52388251781282	5.57414636349591	-0.542373268554389	0.0718321888162812	0.287919452641609
Merged-chr1-131017357-4	chr1	131017258	131017458	+	995.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2487.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	4.93725291233319	5.22256694255637	5.04141549552925	4.43602216821875	5.11642036365752	5.21446450629121	5.01667771364756	4.8610069723978	0.259906552451476	0.47168267536355	0.750014008853512
Merged-chr8-88755349-4	chr8	88755255	88755455	+	814.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58327.0	NM_001128171	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	3.37197290518709	3.36408305547012	3.5406234027376	3.78721218094325	3.65676335184573	3.2179389722128	3.57734089841633	3.48507922387782	-0.130744296648565	0.80866453554767	0.926138274128125
Merged-chr13-113580486-4	chr13	113580398	113580598	+	944.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38066.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	4.48156480735418	4.3630830935316	4.44092300298261	4.5694318365066	4.33810287818241	3.92915081198612	4.61315176063247	4.73581611933596	-0.0701639140348071	0.864796189595185	0.949269846298694
Merged-chr7-97210178-4	chr7	97210078	97210278	+	788.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	115786.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	4.31486418942412	4.13041807965896	3.9527725030252	4.24176702742912	4.0345641360467	4.12725009402786	4.21488587564573	3.78353989083775	-0.318215120044792	0.455743086550316	0.739120645964751
Merged-chr13-90932914-1	chr13	90932814	90933014	+	988.6666869999999	f0_balb.idr	Intergenic	Intergenic	9792.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	3.79119453139383	3.25511078101387	4.13315705659964	4.0543416768015	2.71038125005741	2.92397293737299	2.8848625850004	3.12295939783219	-4.67774129761545	1.09224071355137e-06	3.79612313231802e-05
Merged-chr19-43930662-4	chr19	43930521	43930721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	9577.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	6.05362046025139	5.89311576923684	5.76358681110761	6.24501220411451	5.62608303874274	5.59964824002579	6.08187952787928	5.70816035565709	-0.401567348019021	0.143165044151279	0.421314949255546
Merged-chr8-11249989-4	chr8	11249872	11250072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009931, intron 2 of 51)	intron (NM_009931, intron 2 of 51)	-62833.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	7.0896191459526	7.03787291346301	7.5803975560779	7.50073621565855	7.10222814549986	6.95803192616175	7.09045999634197	6.79008491035187	-0.457250967495681	0.0355867654917303	0.1873127546355
Merged-chr11-4258929-4	chr11	4258835	4259035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008501, intron 1 of 3)	intron (NM_008501, intron 1 of 3)	1367.0	NM_008501	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	6.14592761442484	6.40760339958803	6.22419467628646	6.02409422998943	6.11485819958636	6.24045755536881	5.99083191406817	5.74936999267802	-0.251515798314405	0.315237318349475	0.627082809311869
Merged-chr18-84680703-4	chr18	84680597	84680797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 3 of 11)	intron (NM_023149, intron 3 of 11)	1362.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	7.50182126142064	7.76617625652711	8.00475049091242	7.69668386229778	7.71189587178549	7.52969634900827	7.56610705922224	7.459385350883	-0.233894196726086	0.208899081343027	0.51324523526683
Merged-chr13-43122807-4	chr13	43122705	43122905	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005748)	promoter-TSS (NM_001005748)	-34.0	NM_001005748	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	6.0963964381161	5.78765138346045	6.2251290303391	6.41850820419692	5.3427603692778	5.79000885365113	5.74083933884129	5.21671864041939	-1.01473166179044	0.000571159738376904	0.00859323166728591
Merged-chr17-29164582-4	chr17	29164480	29164680	+	925.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360239, intron 16 of 21)	RMER15|LTR|ERVL	29524.0	NM_001002786	442827.0	Mm.440341	NM_001002786	ENSMUSG00000064147	Rab44	9830134C10Rik	RAB44, member RAS oncogene family	protein-coding	5.8425799552993	5.8668634051086	5.94243823714325	6.17990851197406	4.73960439273791	4.72938934442271	4.56636743468472	4.91440099089625	-2.27264120733519	4.65855630146351e-13	5.3482480480947e-11
Merged-chr8-119339472-3	chr8	119339354	119339554	+	947.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5084.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	3.4781797660368	3.63276486213688	4.07697934696163	3.81167054401668	3.17018141647193	3.33521888160553	3.40627977114522	3.64166548864592	-1.23871430071268	0.0232504212168772	0.141303085023574
Merged-chr5-90661620-4	chr5	90661519	90661719	+	929.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21092.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	4.78893298155825	4.54570786179843	4.78972366898041	4.72265021963273	4.75701619184256	4.50043215381623	4.93253290741541	4.59396604133054	-0.00474865839198976	0.989134061780434	0.995649910612823
Merged-chr15-59906705-3	chr15	59906625	59906825	+	912.0277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109893.0	NM_027668	71088.0	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	3.46387211545568	3.65496165703136	3.52047190232285	3.52395486746388	3.50352376959787	3.69010145381571	3.61106797849764	3.40415003661753	0.0352024034869316	0.942367500111356	0.979088236393896
Merged-chr14-62328615-4	chr14	62328498	62328698	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3470.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	4.66734810536903	4.20063438658754	4.63047829232619	4.69741731821539	4.27914387714252	4.64201547559075	4.53063430175897	4.77145987824663	-0.019480317176146	0.959894777947148	0.985662310124408
Merged-chr14-14863913-4	chr14	14863825	14864025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195229, intron 19 of 34)	intron (NM_001195229, intron 19 of 34)	43110.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	5.34128890632846	5.49690560170339	4.84632911116441	5.75250556996507	5.91982218028999	5.48804533418838	5.82754324097078	5.67188968399394	0.540773542753002	0.0990439284726681	0.345005764155625
Merged-chr18-24709881-2	chr18	24709781	24709981	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289654, intron 1 of 24)	CpG	1258.0	NM_001289655	225288.0	Mm.329322	NM_175276	ENSMUSG00000034295	Fhod3	A930009H06Rik|FHOS2|mKIAA1695	formin homology 2 domain containing 3	protein-coding	3.2454618965581	3.07892606541157	3.40337340061735	3.05638995101273	3.09399559209087	3.1100885849758	3.17681102646849	3.24411943939736	-0.148785742287613	0.790341504697587	0.918829338045187
Merged-chr10-127641984-4	chr10	127641896	127642096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009284)	promoter-TSS (NM_009284)	-990.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	5.60207659416207	5.73120652888703	5.5228898249592	5.14292595121159	5.66672233403789	5.58368873854942	5.74286291862788	5.40370583743344	0.183899857982198	0.5331281269446	0.788480232425337
Merged-chr18-46370821-4	chr18	46370734	46370934	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58906.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	5.03998451299727	4.45394171024081	5.83619502302828	5.95516796484915	5.28756365582614	4.97811692699888	5.72223975690096	5.48252923072813	-0.0989396256134858	0.883933790185994	0.956367776063247
Merged-chr2-22790532-4	chr2	22790395	22790595	+	929.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	16168.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	3.8589464820831	3.95298550132922	4.24971451557507	4.42847776254993	4.02347551412413	4.1432291737093	4.2713151027394	4.0668441658695	-0.0851244494544761	0.846555024514491	0.941954402290774
Merged-chr16-76321696-2	chr16	76321610	76321810	+	688.833374	f0_balb.idr|f0_c57.idr	intron (NM_001358238, intron 3 of 3)	intron (NM_001358238, intron 3 of 3)	51339.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	3.75654082609124	3.90595940712712	3.7570576642225	3.81345246986711	3.80676647386675	3.76477927967211	3.88848322752983	3.75496743490596	-0.0180716348637578	0.967424107900865	0.988536511573071
Merged-chr4-40971426-2	chr4	40971329	40971529	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001290448, intron 1 of 15)	CpG	486.0	NM_023739	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	6.00951935260427	6.17390336667057	6.03236395165792	5.93158377696383	6.07686039706235	6.29075564202729	6.1625649565595	5.98414694761344	0.149493808627307	0.525462014858157	0.783252235625498
Merged-chr8-10139790-4	chr8	10139684	10139884	+	991.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-14127.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	5.10205530131479	4.96459229574046	5.28951147623131	5.20471673340601	5.27100717908582	4.94054487620544	5.44782637198558	5.13248517969635	0.128939109068401	0.677742348564714	0.867815982091561
Merged-chr16-33625740-3	chr16	33625621	33625821	+	702.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 8 of 11)	ORR1F|LTR|ERVL-MaLR	-58745.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	3.64734722787157	3.92233081853326	3.54149942396369	3.48015180322686	3.46242668921602	3.60057003023839	3.47185007269611	3.4830295232402	-0.490713261982032	0.328489194468918	0.639958735852395
Merged-chr15-79830538-2	chr15	79830449	79830649	+	850.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013362, intron 4 of 8)	intron (NM_001013362, intron 4 of 8)	3784.0	NM_001013360	504193.0	Mm.38438	NM_029079	ENSMUSG00000089837	Npcd	Cbx6-Nptxr	neuronal pentraxin chromo domain	protein-coding	2.84436027514183	2.7006572915631	2.77866123881871	2.80421422142389	3.0127078526007	3.07689867119634	2.89714999093089	3.02311160919873	0.964174467142634	0.104351489939755	0.355202271647546
Merged-chr11-44470043-2	chr11	44469953	44470153	+	1000.0	f0_c57.idr|f1_balb.idr	intron (NM_024475, intron 1 of 10)	intron (NM_024475, intron 1 of 10)	495.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	4.84305691799513	4.59464181844467	4.87944225817233	4.39668128398401	4.73063746418611	5.15165488744058	4.74692205994192	5.0705642113169	0.529930474997825	0.140114791227329	0.4161857262431
Merged-chr2-167503740-8	chr2	167503694	167503894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153838, intron 1 of 4)	CpG	351.0	NM_001360930	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	4.61091753882672	4.9103030704454	4.52475354262667	4.34488235423694	4.73520628644982	5.08136179705329	4.59036816326971	5.06305859990485	0.574035824243589	0.121913784993456	0.386913737384038
Merged-chr3-19199287-4	chr3	19199208	19199408	+	960.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 1 of 7)	intron (NM_001356295, intron 1 of 7)	11013.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	4.83563241141693	4.51379994634903	4.67397730605239	4.68462794237947	5.16435959110941	5.28215129057554	4.88687002753506	5.38176276091665	1.00378951551096	0.0022089977075798	0.0252544567664347
Merged-chr2-174473066-4	chr2	174472974	174473174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025531)	promoter-TSS (NM_025531)	-133.0	NM_025531	66390.0	Mm.182294	NM_025531	ENSMUSG00000016257	Prelid3b	2310042G06Rik|AA407013|Slmo2	PRELI domain containing 3B	protein-coding	8.73331648131517	8.85856955400874	8.77208060352266	8.38383311436557	8.60127793549012	9.0637011968907	8.97981037380626	8.59104615210152	0.162009220547177	0.391825046258057	0.691520541707427
Merged-chr15-100060990-2	chr15	100060890	100061090	+	926.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	22326.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	3.61355277823755	3.60406623739297	3.39358250815716	3.59033158034551	3.4332160612022	3.44475844999978	3.54815393345489	3.61198289016001	-0.157101801540985	0.748629133032061	0.901023223134367
Merged-chr7-108954433-2	chr7	108954333	108954533	+	983.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	20018.0	NM_025344	66085.0	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	3.12750487413889	3.20851554233485	2.86855635829495	2.94024874071476	2.93070890119105	3.17875773547204	3.22719827687765	3.29144226395099	0.475613007736349	0.414691674407944	0.70914229032969
Merged-chr12-36155283-4	chr12	36155201	36155401	+	794.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025840, intron 1 of 11)	intron (NM_025840, intron 1 of 11)	1524.0	NM_025840	66912.0	Mm.288669	NM_025840	ENSMUSG00000020547	Bzw2	1110001I24Rik|Bdm2|HSPC028	basic leucine zipper and W2 domains 2	protein-coding	3.9295710739881	3.92996049952948	3.61695431966855	4.06886398733398	3.85511188473055	3.90097806933479	3.66082363960978	3.7804989288765	-0.304868951075836	0.509296102517042	0.773960180154769
Merged-chr3-88461647-4	chr3	88461531	88461731	+	780.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163489)	promoter-TSS (NM_001163489)	-449.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	3.55234712534507	3.41262242364445	3.12107900247936	2.94145816309304	3.43173030900061	3.82384795066783	3.68491314515229	3.55074422847799	1.21196072414599	0.0298944391624572	0.166874861013122
Merged-chr7-42505770-4	chr7	42505649	42505849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309388)	promoter-TSS (NM_001309388)	4.0	NM_001309389	434178.0	Mm.333810	NM_001309388	ENSMUSG00000092416	Zfp141	-	zinc finger protein 141	protein-coding	7.44357646998721	7.68409801498846	7.36376122025644	7.14276844005522	7.77267332806762	7.80441318220537	7.71061095752138	7.6960480886901	0.439615043856919	0.0205770687663624	0.130504013728808
Merged-chr10-78264934-1	chr10	78264834	78265034	+	555.0	f0_balb.idr	Intergenic	Intergenic	-20292.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	3.22841632738147	3.27295690962578	3.50096583079063	3.29660732489396	3.21931026981078	3.21168519381019	3.33168771759624	3.39700302427065	-0.130125032106092	0.805510116142804	0.925182413943856
Merged-chr7-121981646-4	chr7	121981499	121981699	+	975.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033318)	promoter-TSS (NM_001033318)	94.0	NM_001033318	233824.0	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	4.91187441535431	4.81840553053781	4.43943091097368	4.57602687030503	4.9695773655	5.3151214183342	4.9919949564812	5.43323313650376	0.972698426422372	0.00452543273581792	0.044125448863395
Merged-chr18-69663674-4	chr18	69663559	69663759	+	805.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-261900.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	3.96226853413848	3.75782501950384	3.3975777606389	3.57245557615651	3.84060865016165	3.77274492540967	4.11464086854669	4.1315779829542	0.828754313091022	0.0827338390158334	0.312458849010877
Merged-chr6-124829490-4	chr6	124829384	124829584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001326594)	promoter-TSS (NM_001326594)	0.0	NM_001326594	22225.0	Mm.3571	NM_013700	ENSMUSG00000038429	Usp5	AA407472|ISOT|ISOT-1|Ucht	ubiquitin specific peptidase 5 (isopeptidase T)	protein-coding	8.32393020056398	8.68928440421536	8.22392184075812	8.43855645396797	8.63051432775371	8.86384246139712	8.86176285721107	8.70988509632995	0.419351397725873	0.0131211083493251	0.0956031703548585
Merged-chr11-117706422-4	chr11	117706333	117706533	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 3 of 21)	L1ME1|LINE|L1	52144.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	5.38705011022426	5.41603910309018	5.06233405709241	4.85795586059153	5.16443916169611	4.93878095948761	4.81915312018984	5.05888834171387	-0.343666973493001	0.310145416278141	0.622292898809352
Merged-chr12-52625197-1	chr12	52625097	52625297	+	1000.0	f0_balb.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-22875.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	4.3567866647249	4.09784326726121	4.43857943100595	4.4035045125724	4.2641039854223	4.20231575539226	4.29560784410522	4.31218630795703	-0.15603027028557	0.687321296650062	0.87220206224481
Merged-chr14-70784256-3	chr14	70784135	70784335	+	706.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9854.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	3.98470402023982	4.09797823779894	3.84595580614578	3.75895317265577	3.53156471157527	3.62907086684982	3.56093158260159	3.89176338758921	-0.797182683991137	0.0955920725063009	0.338505344014353
Merged-chr19-44388645-4	chr19	44388553	44388753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19056.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	7.82500585893373	8.0557733328316	7.73413327085462	7.82307872489912	7.62554578600416	7.47820638509056	7.69645216068337	7.44364119398862	-0.389985451323773	0.0265958523532011	0.15477021040631
Merged-chr12-102456611-4	chr12	102456486	102456686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-12548.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	6.70730250597011	6.37795361203779	6.507272017774	6.68902729770253	6.60891049695031	6.34084599506594	6.67430932428153	6.64520161952487	-0.00799296884216593	0.970778117454006	0.98953696016025
Merged-chr7-63912173-4	chr7	63912095	63912295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-4662.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	6.76094585895896	6.48374038612056	6.83144888885128	6.77021342256443	6.84344287619177	6.78756144693692	6.75581750162758	6.66880321816346	0.0707572576786614	0.729239697717048	0.892524587647261
Merged-chr1-75141677-4	chr1	75141554	75141754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356264)	promoter-TSS (NM_001356264)	37.0	NM_001356264	69171.0	Mm.28193	NM_026977	ENSMUSG00000033159	Cnppd1	1810031K17Rik|AU043960	cyclin Pas1/PHO80 domain containing 1	protein-coding	5.8990268097075	6.00215862445466	6.09630165063473	6.12149791680325	6.01098750796031	6.05225281354419	6.12398761074589	5.9420854195063	-0.0120877699107374	0.95893428422383	0.985325253500605
Merged-chr5-123138353-4	chr5	123138239	123138439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3854.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	5.10441604049401	5.73632888437775	5.78602108314335	5.13926608939165	5.41233708920297	5.79556381378428	5.22105213357535	5.61824934651282	0.091944984186718	0.781701392692092	0.915053176173904
Merged-chr17-84838008-4	chr17	84837937	84838137	+	828.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47251.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	3.41220357843089	3.48264389191274	3.57424435778459	3.71217844648685	3.36609529491872	3.40436133931709	3.55949567161307	3.29094649866554	-0.517368539951427	0.313193269919245	0.625137156187603
Merged-chr2-38451209-4	chr2	38451109	38451309	+	835.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60488.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	4.12575340471274	3.95381148587236	3.67708845905053	4.04944492423622	3.86043785998826	3.85440417018518	4.02154397533835	3.94344033542285	-0.133164684825614	0.763076503976439	0.907078979109007
Merged-chr14-54577569-4	chr14	54577458	54577658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010590, exon 1 of 8)	5' UTR (NM_010590, exon 1 of 8)	103.0	NM_010590	16475.0	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	6.00953754419226	5.93658137856823	5.35930733379268	5.45455216265668	5.91446754394866	5.86368973779594	6.11395542185767	5.83188894090413	0.365334367777601	0.199516175444108	0.50147358341222
Merged-chr5-123141449-6	chr5	123141332	123141532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040398)	promoter-TSS (NM_001040398)	-761.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	5.57603306147897	5.61289125181837	5.54915180394503	5.35089472521434	5.81335815944079	6.12746628993041	5.54890812794884	5.8221319056721	0.544241186084685	0.046270159534616	0.220993335940041
Merged-chr14-62761284-4	chr14	62761188	62761388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008715)	promoter-TSS (NM_008715)	-176.0	NM_008715	18130.0	Mm.319684	NM_008715	ENSMUSG00000035161	Ints6	2900075H24Rik|AI480962|DICE1|Ddx26|HDB|Notch2l	integrator complex subunit 6	protein-coding	8.82965844026089	8.78013181847644	8.41319437455773	8.57405183080523	8.80764154663802	9.0922990327202	8.8028481215764	8.64535407221006	0.233923090319873	0.179122469205574	0.475258442449156
Merged-chr6-39526987-4	chr6	39526909	39527109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172477, intron 1 of 18)	intron (NM_172477, intron 1 of 18)	30825.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	6.8806765175318	7.01594290827913	6.58989207548719	7.20320660946572	7.048292550913	6.97411529644493	7.07152727691289	7.17999324092994	0.153987675532557	0.472754135439988	0.750813509315392
Merged-chr11-118454013-4	chr11	118453924	118454124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045902, intron 1 of 2)	L1MB8|LINE|L1	971.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	6.93701965358372	7.25747776743595	6.92502153298133	6.77899440065552	7.21489114056621	7.1150325521137	6.94179030591988	6.86587797611492	0.0918080337958735	0.665011881899561	0.861182220353476
Merged-chr1-132794655-4	chr1	132794571	132794771	+	808.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52874.0	NM_001160317	269116.0	Mm.326702	NM_182716	ENSMUSG00000026442	Nfasc	AA387016|D430023G06Rik|NF|mKIAA0756	neurofascin	protein-coding	4.24034284691448	3.98456211947687	4.28390552202995	4.54636726507871	3.97347676718409	3.76361030568077	4.30542760831681	4.32260733056122	-0.451208132689529	0.317047385047806	0.628908280252983
Merged-chr10-121496778-4	chr10	121496670	121496870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-20520.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	8.02335105770382	7.59547394357579	8.13750709784735	8.14191995847585	7.7729563238472	7.76740484865222	8.03126985654168	7.96570965040293	-0.139210315631633	0.468233693590164	0.747575390876459
Merged-chr15-57037339-4	chr15	57037253	57037453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	227808.0	NM_001357930	210463.0	Mm.26555	NM_172378	ENSMUSG00000022366	Slc22a22	oat-pg	solute carrier family 22 (organic cation transporter), member 22	protein-coding	6.82443750627635	6.67176334599049	7.16852535682832	7.1310848813108	6.1407782565299	6.07042356646284	5.77542777993728	5.58675529757116	-1.55147696016661	2.01563449622774e-09	1.22102849197442e-07
Merged-chr11-68901482-4	chr11	68901363	68901563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003373)	promoter-TSS (NR_003373)	-103.0	NM_009080	19941.0	Mm.3229	NM_009080	ENSMUSG00000060938	Rpl26	SIG-20	ribosomal protein L26	protein-coding	6.85509952809132	6.79548074492622	6.45381135956018	6.34344274237249	7.05473125172042	7.14593208796337	6.26672972769522	6.92844245700878	0.383106732602433	0.145673297841315	0.425355034132459
Merged-chr15-58692046-4	chr15	58691941	58692141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	131386.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	7.40647190705686	7.15599956910586	7.39814374804357	7.40644824953986	7.3715703995482	7.08750439662256	7.27185115228652	7.19516548960652	-0.141513627740754	0.446206525971279	0.731969452475618
Merged-chr10-37236139-4	chr10	37236045	37236245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97219.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	6.67047148225353	6.60891904349483	6.91107911949123	6.69775813520842	6.62924785866757	6.5339438412572	6.26655038348668	6.03293496126869	-0.477814778924529	0.0429645153605652	0.210908361299977
Merged-chr14-121877581-4	chr14	121877475	121877675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130999, intron 1 of 1)	intron (NR_130999, intron 1 of 1)	695.0	NR_131002	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	6.25796962717874	7.00273453324843	5.9639521835347	5.85660245017292	6.39798931162578	6.43528779184494	5.95673067170195	5.78209882240534	-0.269851774620826	0.421856913476781	0.714268351482731
Merged-chr4-119959581-4	chr4	119959497	119959697	+	740.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	144919.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	3.82277658512738	4.19507366317849	4.13262498064669	4.23700556691043	4.44980477036701	4.15916768574934	4.15987135231166	4.03430445506084	0.265080652550699	0.534237978873397	0.789066961676578
Merged-chr7-100499963-3	chr7	100499866	100500066	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011671)	TTS (NM_011671)	6608.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	4.48198941611015	4.26989875533075	3.57832215428538	3.34052320000016	3.74810066266302	3.99463834810085	3.95271289319268	3.81392257890181	-0.334002527828012	0.548904021833969	0.797730350370992
Merged-chr6-117891626-4	chr6	117891517	117891717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8723.0	NM_001166432	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	6.08469200576135	5.88602693212029	5.66872555554431	5.36322313457693	6.4147798210638	5.81943351365103	6.01461524539454	5.93521739678471	0.502538258391116	0.0887560803024061	0.325145086970919
Merged-chr8-47690799-4	chr8	47690695	47690895	+	915.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15636.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	4.98701292446138	4.88476565567511	4.6542427359477	4.56260330419786	4.37341056715806	4.33001485534875	4.51330548852687	4.44446692515089	-0.794182856550012	0.0324684363025949	0.176431088448156
Merged-chr13-37854231-10	chr13	37854109	37854309	+	962.1166380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	26816.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.27418746933578	5.54714902902435	4.99501575205211	5.04136869899204	4.79336566486486	4.94561432621465	4.70313724914099	4.88277871731329	-0.776299191211769	0.0208255773948208	0.131561570660613
Merged-chr6-26220025-4	chr6	26219885	26220085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D5|LTR|ERVK	288559.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	5.52463777005087	5.29193582655274	5.76622938471889	5.06204674323858	5.64375510337106	5.30253831050799	5.62289724197212	5.2574191503281	0.0985985226826855	0.757150969249322	0.90457703435425
Merged-chr13-100145328-4	chr13	100145234	100145434	+	960.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 15 of 15)	intron (NM_001126182, intron 15 of 15)	20479.0	NM_011420	20595.0	Mm.2025	NM_011420	ENSMUSG00000021645	Smn1	AI849087|Gemin1|Smn	survival motor neuron 1	protein-coding	4.97551659210746	4.69059018444065	4.87348986859872	5.14481062206236	4.65835143979359	4.6364004499521	5.04634987278491	4.83404469210071	-0.290951792043198	0.40235261520937	0.69988558788989
Merged-chr2-172406339-4	chr2	172406236	172406436	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	12542.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	5.05870978092198	4.95123753918913	5.18727007885579	5.06534303478748	4.97014588702434	5.05558332595958	5.24864943156496	5.12156202276293	0.0610773587423468	0.841108676939762	0.939525416908854
Merged-chr8-84701384-4	chr8	84701272	84701472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008535)	promoter-TSS (NM_008535)	-85.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	6.17119009460669	5.73237672119992	5.90968670293559	5.91797728055994	5.87681390676136	5.83940348146877	5.57834696106297	6.0130112415527	-0.160377244164462	0.537382973734258	0.791032627182934
Merged-chr11-61499355-4	chr11	61499263	61499463	+	974.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-5097.0	NM_001291034	23939.0	Mm.38172	NM_011841	ENSMUSG00000001034	Mapk7	BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7|b2b2346Clo	mitogen-activated protein kinase 7	protein-coding	4.69322041120013	4.55449881489321	4.65657847196642	4.46291369856303	4.68581125267737	4.48810935526159	4.67176567248463	4.57533023996199	0.0658126973500255	0.851189307855056	0.943894442930937
Merged-chr16-15956607-4	chr16	15956522	15956722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 9 of 18)	intron (NM_001355731, intron 9 of 18)	69336.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	6.42085231647361	6.58991599097706	6.69266336827264	6.80695458874119	6.4855045251367	6.05755469037919	6.55453189105824	6.55197795507372	-0.309108762467724	0.182492238115551	0.47903894944587
Merged-chr2-20967382-3	chr2	20967303	20967503	+	776.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081364, exon 1 of 24)	exon (NM_001081364, exon 1 of 24)	318.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	3.43207766671183	3.56945971582376	3.31776025428067	3.65043052243935	3.45087261484483	3.48923026562379	3.30617163090741	3.19058279606377	-0.486872311271964	0.35746755428422	0.663619560848277
Merged-chr18-82422249-4	chr18	82422153	82422353	+	958.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15476.0	NM_008082	14427.0	Mm.6219	NM_008082	ENSMUSG00000024553	Galr1	Galnr1	galanin receptor 1	protein-coding	4.23994003606602	4.64992744943671	4.39285862353445	4.75115081980982	4.83773568571997	4.5237753582141	5.05636251936881	4.83268226670105	0.601973840750204	0.113519899211582	0.37254981354517
Merged-chr11-119258681-3	chr11	119258631	119258831	+	861.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175430, intron 16 of 18)	MLT2B2|LTR|ERVL	-9232.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	3.54161905083544	3.68587268060104	3.1918644596724	3.70663819718772	3.08582400679398	3.43272720710245	3.47582957318123	3.31762934924035	-0.774408151372089	0.165547239892158	0.456335178850745
Merged-chr7-16843870-3	chr7	16843770	16843970	+	680.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_178900, intron 1 of 17)	intron (NM_178900, intron 1 of 17)	805.0	NM_178900	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	2.56957273529367	2.43257881933478	2.50343187065313	2.4367204543388	2.56101127521648	2.67488438522911	2.62339175511333	2.63174754204558	0.736704210590423	0.262380040087145	0.574213981359762
Merged-chr5-36730895-4	chr5	36730788	36730988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17791.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	5.65584688440163	5.63281809135333	5.46232168768453	5.60516767422975	5.75891936728808	5.69704086254342	5.65361594492199	5.92909363563676	0.284839200295989	0.268297993665779	0.580085950152971
Merged-chr2-68862270-4	chr2	68862265	68862465	+	867.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	924.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	3.57620971348817	3.8402632145819	3.62908600706722	3.34598652409516	3.34668299528328	3.52087913560468	3.50836179689601	3.62696681682752	-0.333906559470488	0.516042013086527	0.777975906499892
Merged-chr4-129640937-7	chr4	129640823	129641023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005506)	promoter-TSS (NM_001005506)	-118.0	NM_001005506	109658.0	Mm.268863	NM_001005506	ENSMUSG00000053841	Txlna	2600010N21Rik|AI425952|AW209241|Il14|Txln	taxilin alpha	protein-coding	6.73651651238912	6.85199912285716	7.00027415378786	6.44831361698889	6.73508958174227	6.94292787005026	6.3536022849848	6.94706867535072	0.00123604299854876	0.99590798020697	0.998543856884531
Merged-chr16-20301928-4	chr16	20301828	20302028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005767, intron 1 of 9)	intron (NM_001005767, intron 1 of 9)	434.0	NM_001005767	381038.0	Mm.371737	NM_001005767	ENSMUSG00000033918	Parl	D16Ertd607e|PRO2207|PSARL1|PSENIP2|Psarl	presenilin associated, rhomboid-like	protein-coding	6.02191016656872	6.06113947426641	5.77274697273498	6.25239084600802	5.67286653614545	5.92371091813469	5.83970360103925	5.60819333277362	-0.469927071072713	0.0711957878640694	0.286242938566233
Merged-chr11-3427844-4	chr11	3427760	3427960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290473, intron 2 of 5)	intron (NM_001290473, intron 2 of 5)	-18622.0	NM_010718	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	5.50630254120538	5.86388561813445	5.77072607495949	5.91744275111811	5.72733339865995	5.53072514445532	5.69328169009663	5.66780143324506	-0.208734929585809	0.429428621758888	0.720348060843589
Merged-chr6-114358414-3	chr6	114358304	114358504	+	981.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-39532.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	4.37471849588379	4.47167119315158	4.49828060368058	4.55746160934134	4.44542993245297	4.26520875208572	4.22179669221339	4.32896285350119	-0.373794426150414	0.319155398922448	0.631032281663914
Merged-chr15-66272509-3	chr15	66272412	66272612	+	982.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	13712.0	NM_152923	110862.0	Mm.255585	NM_152923	ENSMUSG00000056258	Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding	4.32122340602661	3.88712790977941	4.40224199679003	4.65424252759077	3.52152844463479	4.00663568529256	4.07811266454965	4.4746864370082	-0.714177055566161	0.160522959474889	0.448715634744611
Merged-chr11-32666618-3	chr11	32666498	32666698	+	699.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	24043.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	3.27045290222972	3.61011215069262	3.27086268599197	2.87013516067653	3.52212482962466	3.44742797066856	3.67455508070062	3.2692052897607	0.718381131177398	0.218407057069215	0.525682071995728
Merged-chr19-29403151-4	chr19	29403061	29403261	+	815.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7758.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	3.82201006042782	4.02283064009915	4.28215605265063	3.80944035415868	3.77572329913155	3.99878797845953	4.05486233812194	4.1150675811826	-0.00569561909791137	0.989853710342539	0.995968409833926
Merged-chr2-26119826-4	chr2	26119737	26119937	+	849.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026495, intron 1 of 5)	intron (NM_026495, intron 1 of 5)	2974.0	NM_026495	67991.0	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	4.39318133800236	4.20330676178672	3.82516553050011	4.23704783996634	4.21036654833372	4.0615804943399	4.37317658411037	3.99005600028628	-0.0354552401351055	0.933923326329944	0.976191916746654
Merged-chr3-103374268-4	chr3	103374168	103374368	+	812.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	94975.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	3.52966410558545	3.86743107395239	3.40897488292809	3.47579673251334	3.70127742613824	3.58675191777461	3.62641093825128	3.92317296420412	0.418233629154909	0.396123586375841	0.695056962841936
Merged-chr16-32599445-3	chr16	32599347	32599547	+	836.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9449.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	3.98231010047237	3.97255887035146	3.55755956969918	4.08645941139956	3.60498674426018	3.85280728036217	3.77232668041088	3.98045670824848	-0.345179312898935	0.467606573564813	0.747026558181345
Merged-chr17-24758291-1	chr17	24758191	24758391	+	638.5	f0_balb.idr	exon (NM_001357340, exon 3 of 3)	exon (NM_001357340, exon 3 of 3)	5303.0	NM_001357340	328779.0	Mm.328848	NM_001012402	ENSMUSG00000039628	Hs3st6	3-OST-6	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding	3.19839630600506	2.88121266169975	2.88500026564198	2.94330641260702	2.49975081885629	2.72927392820256	2.61579247628856	2.54791196562271	-2.02826720229022	0.00464729720897363	0.0450115618502564
Merged-chr17-79020614-6	chr17	79020484	79020684	+	866.544434	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171004, intron 1 of 18)	CpG	232.0	NM_001171004	75292.0	Mm.252776	NM_029239	ENSMUSG00000024070	Prkd3	4930557O20Rik|5730497N19Rik|PKD3|Pkcnu|Prkcn	protein kinase D3	protein-coding	4.30145483567945	4.08325436287028	4.12135119067968	4.00789517028318	4.34114042712593	4.14461383674364	4.19631467274379	4.45731422235074	0.429820348512877	0.279877208324208	0.591929276817972
Merged-chr18-34223697-6	chr18	34223606	34223806	+	976.305542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007462, intron 1 of 15)	intron (NM_007462, intron 1 of 15)	-1934.0	NR_040534	633395.0	Mm.414290	NR_040534	ENSMUSG00000073607	Gm10548	-	ribosomal protein L29 pseudogene	pseudo	5.12893004587311	4.97459885516137	4.48413439336037	5.01917191426929	5.19418054441083	4.71286304247292	4.94715940984874	4.8251338784491	0.028285892701091	0.936729085502918	0.977098357477254
Merged-chr15-8099262-4	chr15	8099151	8099351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081402)	promoter-TSS (NM_001081402)	-42.0	NM_001081402	545085.0	Mm.321312	NM_001081402	ENSMUSG00000039828	Wdr70	4833422F06Rik	WD repeat domain 70	protein-coding	7.56858460978087	7.56247527437079	7.23506613179124	7.33918194064829	7.8307131937906	7.78222608434284	7.80289364125303	7.60838969323162	0.435594374759668	0.0148441973141002	0.104067282637677
Merged-chr12-79630434-4	chr12	79630338	79630538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	294295.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	7.70325438613509	7.76839749387925	7.83542765883751	7.64815659264976	7.55008369177123	7.69847061549152	7.73016881406703	7.57118937320402	-0.130875030616432	0.434702468008463	0.723917621318011
Merged-chr9-104232167-4	chr9	104232050	104232250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 6 of 56)	intron (NM_001359740, intron 6 of 56)	30780.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	5.85368482704647	6.03992207836434	5.54481009904259	5.86174390673244	5.7371182900667	5.60157318153203	5.77854437983026	5.98084461188571	-0.099317011923778	0.70739495991857	0.882444677286559
Merged-chr3-8957861-4	chr3	8957766	8957966	+	835.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	6280.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	4.21335302570254	4.08254855146138	4.30108671887799	4.21192457621918	4.1434217022675	4.47041578189079	4.15005382718669	4.06878417380338	0.022859935948307	0.954568919588756	0.983787173349859
Merged-chr1-85277816-1	chr1	85277716	85277916	+	1000.0	f1_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-7250.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	2.48363572651917	2.31770426655929	2.53752915748458	1.93901846387062	1.78204919879694	1.88202280757266	1.8632271949101	1.8663067220565	-5.34606764123089	1.89028934827964e-05	0.000484337312891277
Merged-chr11-79871005-1	chr11	79870905	79871105	+	1000.0	f0_c57.idr	Intergenic	Intergenic	91382.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	5.17085239219438	5.12762390343863	4.40866690127305	5.15194327030543	5.46752904745721	5.37759138686286	5.17767339646779	5.52877927369552	0.705246347757934	0.040382557637719	0.203051008059848
Merged-chr2-72464521-4	chr2	72464443	72464643	+	899.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16C|LTR|ERVK	-11676.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	3.94178531623383	4.39065123674876	4.15193611016392	4.12410915452354	4.46468749740895	4.46052982259931	4.31276989528282	4.19695636115752	0.495940251858084	0.213657854021962	0.51913133269941
Merged-chr9-101075462-4	chr9	101075373	101075573	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001100451, intron 1 of 1)	CpG	711.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	5.01254485332176	5.06128361767872	5.2150740979401	5.26240704512399	5.46386584409896	5.07755451626837	5.12618860325502	5.38522841052598	0.244165853253533	0.423519076886771	0.71543725967637
Merged-chr1-75445939-4	chr1	75445825	75446025	+	887.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4585.0	NM_183022	241118.0	Mm.110790	NM_183022	ENSMUSG00000033007	Asic4	Accn4|BNAC4	acid-sensing (proton-gated) ion channel family member 4	protein-coding	4.02961621541415	3.9628345781603	3.86985080439472	4.22562412924662	4.45109075094789	4.04777600384204	4.19834471285044	4.33852621149711	0.580267288786523	0.170870071275007	0.464014859975631
Merged-chr16-31201320-4	chr16	31201228	31201428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030138)	promoter-TSS (NM_030138)	-90.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	8.83907039421914	8.98967486999548	8.93500322484967	8.69230022229514	8.86828707825819	8.90740836253658	8.90231283377103	8.64880293918665	-0.0357166022602255	0.817866278981499	0.930047250350777
Merged-chr4-118144520-4	chr4	118144414	118144614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161823, intron 16 of 21)	intron (NM_001161823, intron 16 of 21)	-9568.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	7.21671958617864	7.30537201427614	7.51223411219633	7.30381165000809	7.22000680492481	7.04034822127413	7.44908540795706	7.10926171233058	-0.163397663890514	0.396238703254478	0.695104735895268
Merged-chr4-136309939-3	chr4	136309833	136310033	+	804.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-1009.0	NM_001277122	74326.0	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	4.08347315325363	4.19279052439394	3.94577384117609	3.83687984426747	4.18028099698329	3.7948886991861	3.66283033210014	3.78863296722443	-0.359484352833395	0.443398637935876	0.72990713266033
Merged-chr8-35208572-4	chr8	35208505	35208705	+	961.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167136.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	4.97580145699528	4.59233491963405	5.01748880463623	5.51057025326009	5.69454857592216	5.77086210734447	6.27307974021524	5.90912462231024	1.42541677155461	7.42633071252588e-05	0.00157696537525919
Merged-chr11-8535051-4	chr11	8534971	8535171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 10 of 30)	intron (NM_001083587, intron 10 of 30)	129464.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.46574889262869	5.58368028272862	5.40359243162732	5.63014085774759	5.91602643009861	5.78904669913852	6.09359519462171	6.19175956677853	0.765061188522464	0.0033762142504623	0.0350286764800277
Merged-chr1-36068235-4	chr1	36068153	36068353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015818)	promoter-TSS (NM_015818)	-147.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	8.25832765719152	8.11653581031661	8.53797265907829	8.39455424242634	8.17651402682577	8.09366933603766	8.18637977605939	7.72596480619651	-0.351338756278949	0.0571663812206266	0.250587870975673
Merged-chr9-65214669-2	chr9	65214569	65214769	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177460)	promoter-TSS (NM_177460)	-21.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	3.50319841901703	3.93024042464377	3.26771985343493	3.16325759681837	3.34440049451447	3.38218601009495	3.43494422492614	3.55449198462491	-0.23036244114917	0.683105499919629	0.870252834671736
Merged-chr10-43996408-4	chr10	43996300	43996500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172393, intron 2 of 19)	intron (NM_172393, intron 2 of 19)	8446.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	7.37123313286403	7.31134158565289	7.34275465407107	7.11058807062022	7.32618607162059	7.5195255287802	7.34555534129178	6.77825695144715	-0.0139650363934871	0.948324406077259	0.981388084353081
Merged-chr17-55712647-4	chr17	55712556	55712756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028370)	promoter-TSS (NM_028370)	-20.0	NR_151542	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	7.05084924523176	7.23149141164144	6.98882818244826	6.8126353894122	7.17171884616032	7.37960258874257	7.41325979483498	7.03471865014243	0.321126818106223	0.115846549316475	0.376574029949187
Merged-chr15-89172682-4	chr15	89172595	89172795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	1256.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	5.32268564113652	5.58947720782179	5.67306444838492	5.43052876464312	5.24769594260791	5.3014053090491	5.46934531769198	5.4094659755246	-0.265830286570421	0.345658523477859	0.653988358142424
Merged-chr10-94525136-4	chr10	94525031	94525231	+	947.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	10274.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	4.78072960119374	4.8517228792552	4.74615021326804	4.82094098623955	4.64462156126171	4.55149299589444	4.44648425825844	4.16477716652974	-0.71986173853655	0.0486645475004891	0.227827797062439
Merged-chr9-13304237-4	chr9	13304141	13304341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57285.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	6.76572845825691	6.58810101612395	6.72380771186448	7.26958731854753	6.49222577502858	6.45079042614846	6.55116626317402	6.81733609021768	-0.424468408115147	0.0835334260070632	0.314230739528629
Merged-chr13-63278954-4	chr13	63278867	63279067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	18180.0	NR_045794	100504114.0	Mm.437070	NR_045794	ENSMUSG00000097242	Gm16907	-	predicted gene, 16907	ncRNA	7.67335772242238	7.53136309698652	7.90598953095528	7.87194484120381	7.35595153961659	7.34399053970607	7.64526281528679	7.47467365597016	-0.394866622938783	0.0339504178259213	0.181813471632595
Merged-chr10-119152705-4	chr10	119152618	119152818	+	743.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59813.0	NR_045348	73400.0	Mm.416864	NR_045348	ENSMUSG00000100681	1700064J06Rik	-	RIKEN cDNA 1700064J06 gene	ncRNA	3.98663517541532	3.97672268957001	3.94123134481949	4.0522238265489	3.64122237340886	3.54706384385922	3.87702654782475	3.84166287552474	-0.763451168931465	0.0926535748458027	0.332957133239551
Merged-chr18-39026597-3	chr18	39026494	39026694	+	987.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 1 of 21)	intron (NM_001361073, intron 1 of 21)	33449.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	4.21795065934071	4.09979838989259	4.25700671626902	4.28382031543056	3.47878602814912	3.48609866399181	3.73837222051221	3.50695253799546	-2.02605882485858	3.11486153019985e-05	0.000750296882768511
Merged-chr16-56075954-4	chr16	56075816	56076016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360073, intron 3 of 24)	CpG	436.0	NM_001304503	66315.0	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	6.00755802006563	5.98569412613046	6.15375600342055	6.24464766060359	5.92275143038425	5.86432106780279	6.21602040917029	6.22527579814677	-0.0745365620439505	0.761271790426267	0.906512173824769
Merged-chr17-87734880-4	chr17	87734792	87734992	+	903.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	62335.0	NM_008628	17685.0	Mm.4619	NM_008628	ENSMUSG00000024151	Msh2	AI788990	mutS homolog 2	protein-coding	3.97629555362868	4.11727194201522	3.97685057381054	4.08261362095133	4.28058407795116	4.09977131752876	4.15263145997253	4.41290311654051	0.507494140505163	0.207642299246031	0.511667131665279
Merged-chr14-40919696-4	chr14	40919598	40919798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	-26733.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	7.45876375037877	7.4369054678132	7.52419107087539	7.83719193035776	7.10321470271858	7.43368246768694	7.39466350438856	7.11087756651512	-0.430266159942256	0.0315195661395871	0.173076001507588
Merged-chr18-31760519-3	chr18	31760438	31760638	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242430)	promoter-TSS (NM_001242430)	-78.0	NM_001242430	225339.0	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	4.51242125610008	4.5903641058227	4.83680082245503	4.82734673784252	4.93313094030608	4.77796467370491	5.03986263947153	4.79734595438428	0.378354070413715	0.264445735529358	0.576455127446606
Merged-chr6-72162779-3	chr6	72162670	72162870	+	899.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39573.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	4.6252043210508	4.17694952881629	4.31169996465704	4.40117532131773	4.15769158289283	4.34541746080763	4.53374497869848	4.35302393489883	-0.0943345607359838	0.810143591055354	0.926776956547369
Merged-chr13-78210999-3	chr13	78210845	78211045	+	837.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045195, intron 1 of 2)	intron (NR_045195, intron 1 of 2)	-12072.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	3.19692819635201	3.03239244818975	3.25191311435451	3.1223896123958	3.082251755101	2.99133295503685	2.87575929745923	3.35233263608586	-0.247600123996278	0.672603754826388	0.865267714888623
Merged-chr15-98513045-4	chr15	98512933	98513133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6801.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	8.16494788043693	8.30445436854508	8.49846264766304	8.27813194942686	7.99834942949062	8.20789510071613	7.98509351810621	8.30009203860908	-0.241569317520777	0.153839572702453	0.4387781273196
Merged-chr3-135517079-3	chr3	135516971	135517171	+	857.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027288, intron 4 of 16)	MLT1F2|LTR|ERVL-MaLR	31460.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	5.29861882869926	5.27730078948113	5.0647989772088	5.31673645352565	3.61543358043506	3.73031751298865	3.8105607576633	4.14114926100778	-3.71166139669608	3.27865302290863e-14	4.69559846111898e-12
Merged-chr4-62287631-4	chr4	62287541	62287741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025286, intron 1 of 3)	intron (NM_025286, intron 1 of 3)	1212.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	5.33141041071572	4.99711592436961	5.45126993220589	5.36770481799763	5.30083420372182	5.59792726607354	6.03510516766136	5.52978534234086	0.588238684696323	0.0606987501014187	0.260319879998014
Merged-chr13-95888849-4	chr13	95888727	95888927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	3095.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	5.92768271182902	5.90205863792178	5.55910610600314	5.6434096422426	5.73598616449075	5.84415628738949	5.78754664772421	5.71607074413503	0.0148479546357105	0.954194426668301	0.983707323305375
Merged-chr15-84994635-4	chr15	84994498	84994698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-6627.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	6.49471792592479	6.28194970736845	6.74230951379882	6.65240272340749	6.63453052225847	6.72211733188713	6.39303865950191	6.76514730078051	0.112341278880403	0.616773924410027	0.835150401688917
Merged-chr5-3146759-4	chr5	3146660	3146860	+	971.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-197133.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	4.7546722010223	4.92731786133163	4.62859300363837	4.69171591110865	4.99663285385109	5.04524918918606	5.08051527299363	5.24646756075535	0.673435586298377	0.0347426302466648	0.184506877439928
Merged-chr5-77266135-7	chr5	77266030	77266230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011263, intron 1 of 3)	CpG	636.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	5.43298363542878	5.03333105990152	5.98884459008506	5.6095280250379	5.64411141658461	5.9503365586841	5.43646447298944	5.79560299210932	0.263644251860235	0.411808547623746	0.707168433970161
Merged-chr16-78204968-4	chr16	78204836	78205036	+	841.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TA)n|Simple_repeat|Simple_repeat	50518.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	3.35213970779285	3.84166765539105	3.417556661257	3.43226318388177	3.9418053591288	3.65597919711633	3.73656383342993	3.8449841672093	0.852405252062869	0.0844071705824144	0.316131232844722
Merged-chr5-110479357-3	chr5	110479259	110479459	+	789.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30856.0	NM_001142642	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	3.71356712354525	3.65999865258019	3.55304701924436	3.73340180614071	3.79413097654538	3.66855222897261	3.74769635626627	3.49290293220912	0.0434211418379454	0.926569644092474	0.973020473242623
Merged-chr4-137866383-4	chr4	137866275	137866475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	4138.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	5.76739526975659	5.14942920300457	5.64780696103289	5.8037172532598	5.72834144882701	5.44574168919704	5.66853057499827	5.53835223137563	-0.0319029829285968	0.913794316907831	0.967694418307962
Merged-chr3-88593434-4	chr3	88593336	88593536	+	972.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13828.0	NM_025448	66256.0	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|SSR-beta|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	4.82969230059803	5.11200270998062	4.66461837435082	5.49086952136442	4.89221616774708	5.04407542811424	4.76864625208308	5.10577377145073	-0.254762346224063	0.489286123680893	0.761643200749732
Merged-chr4-129821453-4	chr4	129821358	129821558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	750.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	5.06046437131818	4.86135124861663	4.96119646015649	4.89546247848195	4.98068954456758	5.16791284176268	5.12845258661919	4.60036880982416	0.0885845272425857	0.788619670493511	0.91812687233996
Merged-chr3-95111146-4	chr3	95111061	95111261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009336, exon 1 of 6)	exon (NM_009336, exon 1 of 6)	119.0	NM_009336	21427.0	Mm.133919	NM_009336	ENSMUSG00000008958	Vps72	Tcfl1|YL-1	vacuolar protein sorting 72	protein-coding	5.61100357136063	5.48294386349334	5.88654712029341	4.85742771105591	5.65232201391335	5.83602414355224	5.09418468366478	5.65808203637401	0.151010693352415	0.671699992548011	0.864905117611895
Merged-chr12-70136600-4	chr12	70136496	70136696	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17575.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	5.59251124182843	5.30796270434731	5.22759291890147	5.72194263872578	5.28037189937791	5.49625849410469	5.1010476076026	5.15712170599343	-0.405837921569446	0.185642333234337	0.483574244399563
Merged-chr8-82875411-2	chr8	82875300	82875500	+	714.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	12044.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	3.14359551851732	3.05186156316184	3.14393972024426	3.45163412832884	3.32381651893446	3.81217841938384	3.43266994019199	3.59736957036249	1.11938036104631	0.0517409357281499	0.236460228840705
Merged-chr11-22632109-4	chr11	22632014	22632214	+	917.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119831.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	4.12072651328926	4.15902451386386	4.30149799228779	4.24852349019319	4.23569657906557	4.14449737279856	4.4740324157838	3.96536797590866	0.0216402214586497	0.957542926409489	0.984850737934993
Merged-chr4-108339611-3	chr4	108339543	108339743	+	803.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027250, exon 3 of 3)	3' UTR (NM_027250, exon 3 of 3)	11491.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	3.85643034831074	4.13677370654092	3.64581654417102	3.99746933278692	3.66852099434032	3.70415807630469	3.84068496643049	3.58543775318409	-0.668190419929843	0.156526404229538	0.442464399746187
Merged-chr17-26235561-4	chr17	26235545	26235745	+	944.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	8597.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	4.30094786703421	3.96148443939268	4.34091400786769	3.90271380429328	3.79570398813261	3.88653913262989	4.06670144947318	4.33801890589178	-0.250846675952892	0.581097999975125	0.816108482458664
Merged-chr17-84270311-4	chr17	84270231	84270431	+	832.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 30 of 37)	B1_Mus1|SINE|Alu	-82384.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	4.0815192610161	3.5816573814973	3.67277236249661	3.48024058813005	3.46559680309993	3.61860778836032	3.80766824680226	3.7736190666063	-0.137401795566328	0.78585616250793	0.916690524273221
Merged-chr10-69250565-3	chr10	69250466	69250666	+	615.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252637, intron 4 of 10)	intron (NM_001252637, intron 4 of 10)	37372.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	3.42457031515685	3.50955883309006	3.3616849590401	3.20308677142245	4.24208774237865	3.77229324865357	3.58402208273912	3.54139974996912	1.43326209691481	0.00589681011094017	0.0535915534839901
Merged-chr4-83234735-4	chr4	83234662	83234862	+	946.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 17 of 19)	intron (NM_027238, intron 17 of 19)	89427.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	4.00318605225611	3.46499377876988	3.90982908049941	4.22316564802995	3.99912082919728	3.87410023447851	3.62668580500878	3.95528515863867	-0.181249059960659	0.717352521771559	0.886969736012834
Merged-chr2-25365207-4	chr2	25365113	25365313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149315, intron 1 of 8)	CpG	450.0	NR_149315	227620.0	Mm.33797	NM_001033293	ENSMUSG00000026956	Uap1l1	5730445F03Rik	UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	protein-coding	5.93125879063517	5.73136283797953	6.07574467062122	5.97841022393017	5.64930513520136	5.76198700258981	5.76541547428866	5.71597353758254	-0.35151485682752	0.161206293593014	0.449892286675443
Merged-chr4-15269032-4	chr4	15268808	15269008	+	959.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181401, intron 1 of 2)	intron (NM_181401, intron 1 of 2)	3088.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	3.86817478986579	3.58029002638099	3.59831847364135	3.90015934141205	3.79017296947988	3.88676478614168	3.8996566215075	4.04770340289041	0.429197425476309	0.350845017168119	0.658322282833594
Merged-chr1-162005434-5	chr1	162005340	162005540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040562, exon 2 of 3)	non-coding (NR_040562, exon 2 of 3)	471.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	5.78776503540415	5.9943296618707	6.61024510804457	6.4984085519244	6.34196243208377	6.70945836212638	6.54672451256649	6.38040800772634	0.328544115080022	0.229362903071972	0.538312515221446
Merged-chr10-85190173-3	chr10	85190061	85190261	+	842.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5107.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	4.11224851700197	4.448057325927	3.79695857675811	3.08109528216572	4.46109054241538	3.98114271329714	4.13964402499986	4.32529811571494	0.673305566984559	0.24147409089681	0.552034276752374
Merged-chr6-146578768-4	chr6	146578661	146578861	+	925.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138757)	promoter-TSS (NM_138757)	850.0	NM_026218	67529.0	Mm.333499	NM_026218	ENSMUSG00000040242	Fgfr1op2	1500031J01Rik	FGFR1 oncogene partner 2	protein-coding	3.9195627874581	4.43794077201551	4.08304877947442	4.01390112533247	4.3953421294481	3.92361574685232	4.16313467001947	4.88601656034027	0.638616897384122	0.169319747828553	0.461822724438512
Merged-chr16-91352260-4	chr16	91352126	91352326	+	919.787476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20557.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	4.12323503291158	4.71101306396103	4.37076961704173	4.43439199487404	4.50195459679347	4.78572545919698	4.15975330658429	4.61291657656569	0.227930360873464	0.57284129801744	0.81142827366335
Merged-chr11-62541744-4	chr11	62541639	62541839	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-2478.0	NM_028448	73139.0	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	5.35152202779704	5.38242935557881	5.57387272747448	5.7403954288397	5.43355460743893	5.02410264595553	5.26442720162474	5.64376648023338	-0.294322936693451	0.335483702304175	0.645877811487311
Merged-chr11-98767500-4	chr11	98767396	98767596	+	807.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145434)	TTS (NM_145434)	7881.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	4.05735031856828	3.92626311791072	3.51309368108296	3.35828506488813	4.32723687985474	4.04075668526988	3.89984302659126	4.01009852687632	0.964658158237651	0.0523871470489922	0.238433706745969
Merged-chr6-134824588-4	chr6	134824417	134824617	+	944.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-5682.0	NM_177687	232430.0	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	4.2852953107565	3.90638153428872	4.23419121132261	3.38389904164739	5.05081007092286	4.85700492736062	5.19768661630901	5.03671014775708	2.45555744847338	1.69519331051635e-08	8.60643114473918e-07
Merged-chr11-117803453-4	chr11	117803359	117803559	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029964, intron 3 of 5)	MIRb|SINE|MIR	5799.0	NM_029964	77727.0	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	Il-40	RIKEN cDNA 6030468B19 gene	protein-coding	5.62908910006845	5.18631683363115	5.06326100561281	5.42728857114224	5.79783290354118	5.58496962962612	5.78889413208655	5.93932195468937	0.738797656358486	0.00977982422556359	0.0776826335297426
Merged-chr8-119824999-4	chr8	119824895	119825095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	15584.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	6.88401336552414	6.41264406781255	7.11390732241219	7.31641797564667	6.74865971392732	6.54972499964102	6.7403376289651	6.84009438206288	-0.364259521816584	0.145582449116778	0.425250305806328
Merged-chr10-21077253-4	chr10	21077156	21077356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177776, intron 6 of 6)	intron (NM_001177776, intron 6 of 6)	36436.0	NM_001177776	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	5.42040531830659	5.39667709967162	5.5865730783559	5.70703154373747	5.48092029669689	5.47447712897405	5.53253630053077	5.5028002280137	-0.0879415105293317	0.747759515786358	0.90068822490119
Merged-chr15-62046486-4	chr15	62046394	62046594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	7237.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	6.41729981757197	6.50392133167259	6.15171424874123	6.60704620058652	6.86795282991359	6.76836089248949	7.22631688091949	6.87400866915534	0.713090406475752	0.00168397509095401	0.0204336281962182
Merged-chr11-3964935-4	chr11	3964833	3965033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022889, intron 1 of 14)	intron (NM_022889, intron 1 of 14)	958.0	NM_022889	64934.0	Mm.28659	NM_022889	ENSMUSG00000020430	Pes1	-	pescadillo ribosomal biogenesis factor 1	protein-coding	5.86673296249967	5.54952550594993	6.05395671446667	5.99454085302957	5.6569218236065	5.68347124993781	5.5654184610588	5.84094889107291	-0.322332009631354	0.228667452127357	0.537491598143225
Merged-chr1-34473609-2	chr1	34473509	34473709	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011206, exon 15 of 15)	exon (NM_011206, exon 15 of 15)	13863.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	3.2141919644139	3.35339140420974	3.44401036595057	2.87032144898832	3.13557002016154	3.32968876198765	3.26322964398438	3.72323678059432	0.526504084927727	0.373678412936971	0.677157151517113
Merged-chr19-5408623-7	chr19	5408504	5408704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027938, intron 1 of 3)	L2|LINE|L2	1789.0	NR_027938	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	6.05885029859216	6.09467188143732	6.05991964719561	5.90535053511899	6.31052756174102	6.33875404030714	6.09174531069695	6.39385658518294	0.41061835213145	0.0736896749214919	0.292404800462024
Merged-chr2-22758732-4	chr2	22758652	22758852	+	805.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15575.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	3.50635606845687	3.99020093660453	3.85607713181172	3.59824851154075	3.9259605412758	4.07787455241517	4.15220253875593	3.90395455425112	0.760556294911882	0.0963523995710019	0.340107485696223
Merged-chr6-146141425-4	chr6	146141320	146141520	+	780.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 55 of 56)	intron (NM_019923, intron 55 of 56)	207298.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	4.19155628585556	4.16369120317863	4.7077909270385	4.89974501515191	4.01860932467373	4.91244156254525	4.57501271057778	4.47255148044648	-0.0248298285527957	0.957012866868308	0.984757116793997
Merged-chr11-29374283-4	chr11	29374209	29374409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_176841, exon 1 of 32)	5' UTR (NM_176841, exon 1 of 32)	137.0	NM_176841	108686.0	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	6.50016756003243	6.45086663326985	6.43637186300759	6.16229343311028	6.30187496864217	6.41433748436192	6.3352459566082	5.87573054455126	-0.200163934434529	0.410573954995758	0.705950758331354
Merged-chr13-55202200-4	chr13	55202098	55202298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-7584.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	5.46527319276998	5.55354207590496	5.23415425443308	5.39120219256814	5.04723472139003	5.20535372993437	5.38496913271022	5.16531899762553	-0.394812786173628	0.177992343278649	0.47379644735344
Merged-chr15-98993224-4	chr15	98993116	98993316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	7251.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	7.02792336266685	7.30257652174909	6.54372477327417	6.8871382998658	7.44018612863473	7.53601866583911	7.27361615784104	7.13268800130882	0.524998593142028	0.0197309849646345	0.126879734284734
Merged-chr13-115209575-4	chr13	115209466	115209666	+	998.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107602.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	5.00118894540146	5.08682933075565	4.85510292157384	4.78166177554774	5.15581478700594	5.36596173226716	5.01177915122564	5.03284335074518	0.426667035409708	0.17574111277992	0.470579184430218
Merged-chr2-144337931-4	chr2	144337811	144338011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5831.0	NM_026924	107586.0	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	5.5927922453554	5.30866388813969	5.22848573043824	5.51725556387387	5.32467638779164	5.43555916858032	5.29629130745578	5.19197623601984	-0.201222199389284	0.484379640041563	0.758512965718938
Merged-chr16-15594458-4	chr16	15594354	15594554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023585)	promoter-TSS (NM_023585)	64.0	NM_001159351	70620.0	Mm.235407	NM_023585	ENSMUSG00000022674	Ube2v2	1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MMS2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding	7.35754272041342	7.07331487479536	7.46010946568562	7.03442490522222	6.97110139977864	6.86858328136891	6.93242820293737	7.15669876060481	-0.337244587863324	0.100973578678256	0.348744146510806
Merged-chr10-127945472-3	chr10	127945351	127945551	+	865.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46916.0	NM_027301	70061.0	Mm.158320	NM_027301	ENSMUSG00000040127	Sdr9c7	1810054F20Rik|Rdh20|Rdhs|SDR-O|Sdro	4short chain dehydrogenase/reductase family 9C, member 7	protein-coding	2.95363858327506	3.06969587844155	2.81658345798318	2.81966286915555	2.99020663849906	3.41220590619109	3.0068518549242	3.19052322382191	0.984175020181018	0.0960796384086	0.339666861144618
Merged-chr18-84807824-4	chr18	84807729	84807929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43509.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	7.84368092714537	8.05369824880864	7.80685455938729	7.98264206309119	7.85714538424663	7.68900873723907	7.95522544362263	7.8620184714518	-0.109364029085338	0.512891789482828	0.776037342082738
Merged-chr3-142882106-4	chr3	142882054	142882254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178654)	promoter-TSS (NM_178654)	-150.0	NM_178654	109333.0	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding	8.84215365095423	8.78642502326768	8.7571476744446	8.60938055594714	9.06934647763505	9.14276671477347	9.28471190284029	9.04266898880065	0.485135159257263	0.00103440005154702	0.0138189867246745
Merged-chr4-41568569-4	chr4	41568487	41568687	+	931.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027993, intron 1 of 5)	intron (NM_027993, intron 1 of 5)	940.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	4.6407492894278	5.09268772946419	4.73622598444126	3.84628872692814	6.16922345557024	5.52826368885002	5.62712098923121	5.65288839680976	2.06910749482868	2.55515610717811e-07	1.00482572681122e-05
Merged-chr8-70001868-4	chr8	70001717	70001917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-5433.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	6.70690424440193	6.72108569650416	6.63283370549182	6.50151371590212	6.70861189075862	6.60871094057932	6.78516281781123	6.59671750939163	0.065429306662497	0.749245609283048	0.901235090931483
Merged-chr16-57455798-4	chr16	57455713	57455913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-93429.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.17967084218679	6.35273290109859	6.34812942058351	5.67285302335459	6.36552543646506	6.37619481871423	6.2442848650286	6.09422581010591	0.195029591149544	0.465192491217987	0.745781128683194
Merged-chr6-90462552-4	chr6	90462443	90462643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023184)	promoter-TSS (NM_023184)	-33.0	NM_001355668	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	6.6645554303827	6.59239492403914	6.65014455601472	6.93381788932619	7.02211736093093	6.87289696891393	6.9197192228252	6.44177630461066	0.154680755939749	0.495584722152121	0.76587040400499
Merged-chr5-24165022-4	chr5	24164929	24165129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346582)	promoter-TSS (NM_001346582)	66.0	NM_001346582	231042.0	Mm.45513	NM_153092	ENSMUSG00000048439	Nupl2	AV116043|CG1|NLP-1|Nlp1	nucleoporin like 2	protein-coding	6.77784540165094	6.53978349668626	6.94087328434997	6.77324200922595	7.02247829213073	6.88185993586836	6.74457657065934	7.03323469720876	0.23441751135413	0.254647897423219	0.566102425180865
Merged-chr1-143731123-1	chr1	143731023	143731223	+	578.5	f0_balb.idr	Intergenic	B3A|SINE|B2	-8226.0	NM_001038593	69367.0	Mm.272727	NM_023505	ENSMUSG00000018196	Glrx2	1700010P22Rik|AI645710|Grx2	glutaredoxin 2 (thioltransferase)	protein-coding	3.43814302873427	3.36435428761263	3.26272911838895	3.40546474542257	3.58721352254019	3.5523044307974	3.42536996028485	3.43675021195363	0.453623199243551	0.362984349264169	0.668171692259085
Merged-chr10-119004096-4	chr10	119003996	119004196	+	997.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	46403.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	4.96273796795165	5.23451739827621	5.1017500353295	5.31823958899169	4.90614868491094	5.13861365609414	5.10894794077588	5.03112646320028	-0.255581844167002	0.410349398157718	0.705769235507266
Merged-chr14-31376114-4	chr14	31376024	31376224	+	921.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 6 of 7)	intron (NM_001347585, intron 6 of 7)	39486.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	4.4294385077994	4.08364816860137	4.34357739192464	4.5596597034695	4.70741906006997	4.32848220721424	4.490222396854	4.38484056833818	0.271165188634779	0.491792239290056	0.763207600410476
Merged-chr2-60269538-4	chr2	60269428	60269628	+	756.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025422, intron 2 of 4)	L2|LINE|L2	14956.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	3.62797309988405	3.81459246441102	4.10522199999011	3.62670301178843	3.79091354513915	3.62446243825572	3.91793275145408	3.73696502695104	-0.0752587445601152	0.874182384765123	0.952832392676241
Merged-chr11-60115355-4	chr11	60115237	60115437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009021, intron 1 of 5)	CpG	10324.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	7.95303676118507	7.83485191704311	7.81750546409967	7.95867576656398	7.99847304652772	7.84131498535818	7.70937095958912	7.52240596623839	-0.141399974130611	0.429858972492467	0.720635978674715
Merged-chr4-118098891-3	chr4	118098792	118098992	+	999.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285520, intron 2 of 11)	Charlie20a|DNA|hAT-Charlie	36054.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	3.51206919130276	4.15302147239858	4.0175662551049	3.9349484269465	2.7846867264385	3.08732741654637	3.11630444970072	3.04890126902103	-4.28190413472908	2.76010098934808e-07	1.08005073293462e-05
Merged-chr11-53628099-3	chr11	53628005	53628205	+	897.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6597.0	NM_008355	16163.0	Mm.1284	NM_008355	ENSMUSG00000020383	Il13	Il-13	interleukin 13	protein-coding	3.69308197242768	3.74769560755893	3.42307176714973	3.52814252636327	3.57614102131327	3.59680896738895	3.52451357376799	3.48007593598904	-0.178899133686607	0.713827672163139	0.885507313176618
Merged-chr9-45274854-4	chr9	45274774	45274974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5725.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	5.50851231885515	5.63687902009951	6.13645415334037	6.314951392176	5.75588353993784	5.42687297426049	5.74980699112365	5.77510843149664	-0.439953003503277	0.151185871266671	0.434534994180916
Merged-chr2-144556174-4	chr2	144556044	144556244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019787)	promoter-TSS (NM_019787)	-85.0	NM_001252544	27054.0	Mm.248492	NM_019787	ENSMUSG00000027429	Sec23b	-	SEC23 homolog B, COPII coat complex component	protein-coding	7.27040759357052	7.1132932426345	6.93787101810978	6.99198152974783	7.21493468277259	7.3278242036196	7.49765760242804	7.16871499560428	0.308367535562998	0.110471909723278	0.367014238608783
Merged-chr14-75176783-4	chr14	75176710	75176910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	40385.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	7.0888300700326	7.36830137504976	6.96193412618793	7.06143786834105	7.40379049120082	7.41604911963301	7.17026223026594	7.34779618906808	0.285066977283041	0.13858812835951	0.414129487342634
Merged-chr2-35329658-2	chr2	35329558	35329758	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	7351.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	3.28528073815088	3.52407597245575	3.28574843486818	2.97150938937937	3.07902268021615	2.94958742430078	3.10202146761037	3.04870440281218	-0.90355987790449	0.132736912574403	0.405738749474138
Merged-chr18-39635028-4	chr18	39634899	39635099	+	898.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-138498.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	4.48013246407633	4.42371939973684	4.35758897363689	4.37625840033714	4.30248654000941	4.29783502418741	4.38016200449868	4.31100409458302	-0.202668414358088	0.584975264264985	0.817921981949778
Merged-chr13-44504651-4	chr13	44504588	44504788	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	64961.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	5.0627735450566	4.71421930341394	4.7918345936743	4.8597082396983	4.69196193338966	5.03781548108492	4.91111512593677	4.66981265016824	-0.0649840878523051	0.847144709159356	0.9422142432572
Merged-chr19-5840649-4	chr19	5840504	5840704	+	839.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	4874.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	4.16922175919245	4.2345591042537	3.5919023805422	4.13423760738025	3.92408456005485	4.25193962301682	3.70381840108999	3.98554703667206	-0.21852377529585	0.646345809625902	0.851295585787822
Merged-chr2-25072381-4	chr2	25072281	25072481	+	806.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7942.0	NM_028093	72090.0	Mm.33403	NM_028093	ENSMUSG00000036813	Entpd8	-	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding	3.9612408666939	4.43769926892906	3.8050482136456	3.73867531349144	4.04776619896839	4.13445890521557	3.99260841215394	3.56092820272127	-0.165115688377818	0.739454343904429	0.897296545139168
Merged-chr18-37806298-3	chr18	37806209	37806409	+	799.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033581)	promoter-TSS (NM_033581)	-101.0	NM_033581	93706.0	Mm.247203	NM_033581	ENSMUSG00000102918	Pcdhgc3	PC43|Pcdh2	protocadherin gamma subfamily C, 3	protein-coding	4.1782214432644	3.84638552238987	3.75995230868691	4.01626707274395	3.6904611542893	3.93435832269786	3.68979283868545	4.00704299090321	-0.366847292480784	0.4224962575571	0.714750979996272
Merged-chr10-111156610-3	chr10	111156507	111156707	+	996.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8195.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	4.49008443792413	4.60145506383166	4.63665136258976	4.65552021068327	3.79461008316954	3.84807769039535	4.11933745421652	4.36638331020696	-1.37837701557095	0.00112816956846167	0.0148158637847848
Merged-chr11-100552261-2	chr11	100552161	100552361	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 5 of 11)	ORR1F|LTR|ERVL-MaLR	6629.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	3.27440166359341	3.15765226769918	3.27484322005887	3.41524366360624	2.94105002490454	3.07098613496085	3.36706013669657	3.21641528151914	-0.518131385723056	0.364376865574098	0.669265956462516
Merged-chr15-99497297-4	chr15	99497249	99497449	+	823.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028224, exon 12 of 12)	3' UTR (NM_028224, exon 12 of 12)	-22619.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	3.79179677782512	3.93076718208394	3.29588853112889	3.41238264837312	4.09181107451565	3.86110897211057	3.61268026782037	4.26125318517928	1.00224519710733	0.0560493135581578	0.247812540515319
Merged-chr11-71004498-4	chr11	71004366	71004566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178367)	promoter-TSS (NM_178367)	-34.0	NM_178367	216877.0	Mm.35399	NM_178367	ENSMUSG00000040620	Dhx33	3110057P17Rik|9430096J02Rik|Ddx33	DEAH (Asp-Glu-Ala-His) box polypeptide 33	protein-coding	7.64028000923287	7.84052283202388	7.58120078249865	7.21570225262894	7.54999910539126	7.73170120589813	7.57869185308843	7.6695602725447	0.0697391405570359	0.726825917774336	0.891273682846738
Merged-chr6-137387130-4	chr6	137387028	137387228	+	946.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 7 of 26)	intron (NM_011216, intron 7 of 26)	-23593.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	4.86811376131308	4.89095922446373	4.63259538655271	4.51609940296263	4.994214075509	4.81059515037583	5.36336885821519	4.71317807062104	0.548344289228665	0.123731962877978	0.390213441988996
Merged-chr8-70660532-4	chr8	70660447	70660647	+	905.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023217)	promoter-TSS (NM_023217)	-809.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	5.28855878232468	4.82612656685742	4.98951315436286	5.40679498512299	5.08479767823739	4.63514398818452	4.78513191414409	4.54680919073226	-0.718466525560872	0.0494242986198017	0.230075166822881
Merged-chr13-52507676-3	chr13	52507575	52507775	+	754.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001024474, exon 2 of 2)	exon (NM_001024474, exon 2 of 2)	23161.0	NM_001024474	68203.0	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	3.45405314559323	3.08377653181127	3.40648173410925	3.40696904449392	3.22385676514203	2.81389486683003	3.06121995121727	3.00474047372428	-1.19674921074972	0.0538722553437665	0.242276248234519
Merged-chr13-21200196-4	chr13	21200124	21200324	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Leu-TTG|tRNA|tRNA	20293.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	5.09762878430651	5.15269478777672	4.95280768062911	5.58317409687557	5.41589418684132	5.09228248827948	5.17234867058233	5.3720782542055	0.0569680806050715	0.862536933468961	0.948225401948674
Merged-chr4-132329517-4	chr4	132329422	132329622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027925)	promoter-TSS (NM_027925)	16.0	NM_027925	71787.0	Mm.239183	NM_027925	ENSMUSG00000028898	Trnau1ap	1110007F05Rik|AA387999|Secp43|Trspap1|WI1-2643G14.2	tRNA selenocysteine 1 associated protein 1	protein-coding	7.13853453683361	6.93273224067153	6.87300480466009	6.83001628292445	7.27419613129717	7.41519568374334	7.32290992145014	7.08815257252206	0.464261757720742	0.0160919300924314	0.110092992315377
Merged-chr2-30796653-4	chr2	30796558	30796758	+	911.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028487, intron 4 of 6)	intron (NR_028487, intron 4 of 6)	5079.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	5.03204623360447	4.59487152368259	4.44760957955926	4.61695312524826	4.43710859817184	4.75458341875711	4.85350495804004	4.65789201541144	-0.0181960867723995	0.960780107394935	0.986019634156535
Merged-chr9-123869484-4	chr9	123869389	123869589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7460.0	NM_011798	23832.0	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	6.80610567560497	7.12886776684147	6.84848296813732	6.32611881495092	7.08653130651937	6.91235041406097	6.80013885318389	6.43227904439993	0.0499256284944445	0.847584084806388	0.942335253076034
Merged-chr12-34195667-4	chr12	34195575	34195775	+	972.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 23 of 27)	MusHAL1|LINE|L1	238004.0	NM_011658	22160.0	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding	4.60673670234913	4.56124832199272	4.9464186002256	4.60450490155427	4.83976695015115	5.0154362120738	4.88904221545026	4.94303818308351	0.493894147615586	0.138647162867754	0.414216102032682
Merged-chr11-85374929-1	chr11	85374829	85375029	+	1000.0	f0_balb.idr	intron (NM_138681, intron 6 of 25)	intron (NM_138681, intron 6 of 25)	21765.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	3.30844628069537	3.63419356626134	3.25151456781804	3.86908901785856	3.15124923853008	3.0297112216094	2.98477733958846	2.84243896942949	-2.13044993769474	0.00125229225887238	0.01611587609732
Merged-chr15-38300013-2	chr15	38299895	38300095	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001357677)	promoter-TSS (NM_001357677)	-95.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	6.569037418946	6.40432337359019	6.84474057575247	6.23335467671711	6.88826535070179	6.53754086711884	6.56835966350852	6.83987687298801	0.29947029502181	0.208613411768042	0.513007192521551
Merged-chr18-36240091-4	chr18	36239988	36240188	+	808.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-41074.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	3.89310568741958	3.78905668628279	3.89366469450728	3.66726024314738	4.07512540292506	3.96308128509202	4.18782334947999	3.98914557789619	0.715465047700479	0.0936847456671516	0.334808840931901
Merged-chr19-45161281-4	chr19	45161206	45161406	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10591.0	NM_021901	21908.0	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	4.88705538646364	4.76269186421074	4.38378713190978	4.95135509480971	4.83079810917137	4.95224229435967	4.93139547768884	4.84937476124077	0.223238919777842	0.520560260771128	0.780818451583178
Merged-chr1-170573535-4	chr1	170573427	170573627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 1 of 9)	intron (NM_001109985, intron 1 of 9)	16322.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	5.54748608763926	5.56911822705269	5.52229104089924	5.42709546418859	5.21476972332014	5.49739315744486	5.23299435683778	5.40807355460784	-0.310917136969596	0.264781213857103	0.576603500616005
Merged-chr11-62079721-4	chr11	62079617	62079817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029936, intron 1 of 12)	ERV3-16A3_LTR|LTR|ERVL	2693.0	NM_001029936	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	5.76534882719368	6.09971673473563	5.58736159956931	5.86506467263079	5.49711417133104	5.64981811345575	5.68876025642035	5.43832564632425	-0.466890275231231	0.0852271928911439	0.317839173591588
Merged-chr5-136987515-4	chr5	136987413	136987613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310747)	promoter-TSS (NM_001310747)	446.0	NM_027318	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	5.60969112969303	5.12565612844509	5.21993051908578	5.20108616940236	5.2127206314082	5.45857656996605	5.3469001045728	5.58249379028694	0.191413054430252	0.524008704062943	0.782704938068323
Merged-chr5-142896463-4	chr5	142896241	142896441	+	770.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1103.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	2.93640735193848	2.96490133245932	3.06391840438438	2.9407485960329	3.15881458285773	3.11037849163467	3.2212738012684	3.33341374885855	0.946145976360936	0.0880324535450425	0.323660227834844
Merged-chr11-71019450-4	chr11	71019344	71019544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291147)	promoter-TSS (NM_001291147)	-141.0	NM_033562	116891.0	Mm.28131	NM_033562	ENSMUSG00000018442	Derl2	CGI-101|Derlin-2|F-lana|Flana	Der1-like domain family, member 2	protein-coding	8.95316526921615	9.1969880371497	8.9067264613631	8.66705255310596	8.82572530639887	9.13274813119388	8.78964377614687	8.65766378893182	-0.098898183516472	0.586012597575042	0.818516944044141
Merged-chr12-80939360-4	chr12	80939303	80939503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	5996.0	NR_045057	100504661.0	Mm.442322	NR_045057	ENSMUSG00000112880	Gm20337	-	predicted gene, 20337	ncRNA	6.15321909038189	6.07034676682195	5.98474638098064	6.05735864094436	6.21086659534213	6.26844161618087	6.18072703943728	6.12991017257029	0.20287138306437	0.366907660146519	0.671244771932277
Merged-chr13-18785936-3	chr13	18785846	18786046	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 5 of 28)	intron (NM_172120, intron 5 of 28)	68654.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	3.37219417220635	3.25843341315927	3.28975652301833	2.7279145919216	4.70871737266399	4.9456969613231	4.68453725669067	4.79767106765636	5.48452252095719	3.15505579904431e-21	1.24763175955653e-18
Merged-chr18-46298840-4	chr18	46298736	46298936	+	953.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160399, intron 2 of 9)	Lx8|LINE|L1	13092.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	4.72716262240743	4.4498405120888	4.32917096506854	4.83567941362056	4.71295255682554	5.17036245269138	4.81415679899843	4.76236235252076	0.527384588191775	0.156700586669223	0.442786465205583
Merged-chr3-152259633-4	chr3	152259542	152259742	+	909.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199465, intron 1 of 12)	intron (NM_199465, intron 1 of 12)	6153.0	NM_001357206	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	4.79123145944552	4.89924947547803	4.14382910798484	4.51483674938433	4.27775829731083	4.37382445499622	4.36369369918765	3.9136743007428	-0.86680960374817	0.0440817035485061	0.214103826467357
Merged-chr4-11929573-4	chr4	11929469	11929669	+	952.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36144.0	NM_001098231	381511.0	Mm.331489	NM_001033453	ENSMUSG00000049225	Pdp1	Gm1024|Ppm2c	pyruvate dehyrogenase phosphatase catalytic subunit 1	protein-coding	4.74446429566134	4.60355726289386	4.7452400631134	4.95562573828741	4.76720065416762	4.3887448968822	4.56810057108367	4.74210254137954	-0.312321285848223	0.38263589139867	0.684637549504146
Merged-chr14-76899527-1	chr14	76899427	76899627	+	554.0	f0_balb.idr	Intergenic	Intergenic	137090.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	3.10579475328316	3.01746870806723	3.4049575674786	3.31269506917151	3.37517024395158	3.40661031596018	3.4922968266733	3.40302553840693	0.690346275190184	0.199895054918022	0.50185984431534
Merged-chr1-87214337-4	chr1	87214263	87214463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001039169, exon 1 of 7)	5' UTR (NM_001039169, exon 1 of 7)	424.0	NM_001039169	26987.0	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	6.43002144447452	6.30340795174249	6.46402591646354	6.20587182995077	6.20114903361367	6.30837518197951	6.23948303030188	6.20907137402656	-0.158143934518035	0.477256873247722	0.753399593177778
Merged-chr1-10038063-4	chr1	10037971	10038171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026493)	promoter-TSS (NM_026493)	88.0	NR_102282	26754.0	Mm.402384	NM_013715	ENSMUSG00000025917	Cops5	AI303502|CSN5|Jab1|Mov34|Sgn5	COP9 signalosome subunit 5	protein-coding	7.11001440867793	7.581395330468	8.01675219794615	7.32967665672628	7.07150521814994	6.95780429405368	6.97428479283841	7.40813184706673	-0.58520014354567	0.016709630004183	0.113230650615741
Merged-chr14-66277117-4	chr14	66277010	66277210	+	988.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	3942.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	5.16869595226145	4.64273880338769	5.00299338607994	5.27146930225874	5.14319636275987	5.21260074051903	5.08058523338063	5.34043288723639	0.2617874527256	0.426962115482628	0.718234557355738
Merged-chr3-89438855-3	chr3	89438740	89438940	+	707.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146131, intron 1 of 10)	intron (NM_146131, intron 1 of 10)	2136.0	NM_146131	229534.0	Mm.65906	NM_146131	ENSMUSG00000042613	Pbxip1	4732463H20Rik	pre B cell leukemia transcription factor interacting protein 1	protein-coding	3.02666338578913	3.14787708906694	2.96863685483123	3.09793591316127	2.97748066508737	2.73210692517975	2.89801118701958	2.90608588570306	-0.786182550371335	0.1977659044303	0.499070386139272
Merged-chr10-79824577-4	chr10	79824458	79824658	+	927.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030218, intron 1 of 4)	intron (NM_030218, intron 1 of 4)	3537.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	4.64980055803334	4.3441999334218	4.03245803817187	4.38933458002745	4.54506649692587	4.31874676648733	4.59300302842972	4.33143688789974	0.196532335241839	0.618319547398926	0.835969883041169
Merged-chr12-111670088-2	chr12	111669988	111670188	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021273, intron 6 of 7)	intron (NM_021273, intron 6 of 7)	2250.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	3.26625833364954	3.14701136917305	2.9473019328936	2.84162702824554	3.26911579151432	3.26107878040401	3.46004149947216	3.42455220747952	1.17009137446892	0.0379142343761244	0.194795531157656
Merged-chr19-6969802-4	chr19	6969719	6969919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008874)	promoter-TSS (NM_008874)	-5.0	NM_001290349	18797.0	Mm.273204	NM_008874	ENSMUSG00000024960	Plcb3	mKIAA4098	phospholipase C, beta 3	protein-coding	6.16729743776299	6.25973600568632	5.53905742442051	5.62645731062071	6.02445738980643	6.11503874098188	6.34577779932684	6.02286671874172	0.317542052807681	0.26465425321698	0.576566406596513
Merged-chr1-131658205-4	chr1	131658112	131658312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007799, intron 1 of 9)	intron (NM_007799, intron 1 of 9)	19898.0	NM_007799	13034.0	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding	7.38878647897629	7.45813380555615	7.13988712173148	7.44955916258908	6.89771326474697	7.00510755752417	6.93170977959313	6.93525188966944	-0.59048906746717	0.0016580020125324	0.0202149580764035
Merged-chr4-88415268-4	chr4	88415165	88415365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025760, intron 6 of 6)	L1MA6|LINE|L1	23661.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	6.32288160732771	6.21504094111072	6.30575093847049	6.74239603715051	6.2518211213543	5.94447942641704	6.42806378053666	6.08100981220128	-0.35683136055847	0.163117427013891	0.452706698401916
Merged-chr11-87527587-4	chr11	87527481	87527681	+	987.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 18 of 30)	RMER1C|Other|Other	-50808.0	NM_001361936	18952.0	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|Pnutl2	septin 4	protein-coding	4.99525623147673	4.83312905950615	4.81516738806064	5.17004280753073	5.16201683316793	4.91178281469574	4.62874083176201	5.15078322792135	0.02652283009812	0.938358085520139	0.977625734327254
Merged-chr3-60511566-3	chr3	60511439	60511639	+	884.7333369999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	10360.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	2.51580968976071	2.31168685112978	2.51606186356322	2.37239655427713	2.64423775852563	2.83674942851432	3.14383039060882	2.95935317496141	2.44248370882645	0.000526633867879588	0.00804766737538838
Merged-chr17-87672423-4	chr17	87672282	87672482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008628)	promoter-TSS (NM_008628)	-175.0	NM_008628	17685.0	Mm.4619	NM_008628	ENSMUSG00000024151	Msh2	AI788990	mutS homolog 2	protein-coding	7.41650110731177	7.35854161392279	7.34648690532093	7.70466606625426	7.65000495824146	7.47048400571831	7.70888689939658	7.42249149179235	0.124641008340667	0.511849294337364	0.775668292015302
Merged-chr2-25549639-4	chr2	25549542	25549742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2702.0	NM_009422	22030.0	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	5.2910983528551	5.77062761312969	5.29203057318029	4.12280955968632	6.64293328064347	6.63879795321598	5.82639264451247	5.8756556961433	1.65483008202836	0.00696035588303085	0.0606433765671008
Merged-chr9-20651940-4	chr9	20651824	20652024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023371)	promoter-TSS (NM_023371)	-206.0	NM_023371	23988.0	Mm.7906	NM_023371	ENSMUSG00000032171	Pin1	0610025L01Rik|D9Bwg1161e	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	protein-coding	9.43911827432098	9.72226752107323	9.67541334259397	9.67367221382587	9.6569334084994	9.92826079719147	9.82627037718226	9.61209796345777	0.155537343377064	0.298395547416077	0.610488248958896
Merged-chr14-79522538-4	chr14	79522437	79522637	+	910.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	6863.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	5.01480953300351	4.78383393469335	4.75650824703549	5.02309172251892	4.46775056269824	4.35959877442192	4.4106135357974	4.33135761408627	-1.11925843556927	0.00184051557475039	0.0219293702871038
Merged-chr5-21188148-2	chr5	21188048	21188248	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 1 of 26)	intron (NR_153365, intron 1 of 26)	1881.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	3.17544628242506	3.5555542903096	2.82228906161248	2.95652958207428	3.32473398814761	3.62334003026786	3.16432692940999	3.29319026329394	0.731087049240125	0.241898771854859	0.552446904798569
Merged-chr3-121329778-4	chr3	121329700	121329900	+	779.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155539, intron 2 of 2)	intron (NR_155539, intron 2 of 2)	38060.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	3.92449579683666	3.49873804436801	3.73558083373262	3.58661614991799	3.8625680758867	3.43286077916238	3.99127702446698	3.57056424641304	0.148119850883936	0.768288626264921	0.909356419531329
Merged-chr13-81351210-3	chr13	81351109	81351309	+	871.3777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 83 of 89)	Lx9|LINE|L1	281935.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	4.55007011756551	4.28265643910526	4.23380577508707	4.31844856360713	4.03428473372693	4.21594815458851	4.07400468982686	4.1854047499968	-0.563260838231595	0.157730090276169	0.444407635505183
Merged-chr10-34167182-4	chr10	34167091	34167291	+	964.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 2 of 5)	MLT1C|LTR|ERVL-MaLR	-39219.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	5.53288274665541	5.54991052803764	5.39962096398445	5.32497228167304	5.02358445039494	5.57290874250057	5.12495070864279	5.18043898142731	-0.392319933105308	0.194529486384429	0.494939030288721
Merged-chr10-41587367-5	chr10	41587222	41587422	+	970.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 32 of 47)	intron (NM_001358562, intron 32 of 47)	19306.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	4.19175860387194	4.5466631863545	5.1527995217085	4.31452181174521	4.34219516397463	4.78502584812292	4.66567812479654	4.68507587860468	0.0558372316012628	0.895754258946396	0.960963015915927
Merged-chr4-11166715-4	chr4	11166601	11166801	+	802.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021897, intron 3 of 3)	B3|SINE|B2	10260.0	NM_021897	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	3.72272056046854	3.92053784782435	3.5981690215328	4.12588527080466	4.30050619446609	4.06545201399997	4.23580659909554	4.08408612139551	0.78978756019728	0.0877472322101056	0.323128989677847
Merged-chr14-56576633-6	chr14	56576530	56576730	+	953.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145978, intron 1 of 34)	intron (NM_001145978, intron 1 of 34)	1011.0	NM_001145978	328417.0	Mm.379357	NM_001145978	ENSMUSG00000054509	Parp4	Adprtl1|C030027K23Rik|E230037B21Rik|Gm743|PARPL|PH5P|VAULT3|VPARP|p193	poly (ADP-ribose) polymerase family, member 4	protein-coding	4.03342865241539	4.11156882884909	4.03401774925143	4.16777410090262	4.19929917975649	4.10719685578439	3.6926581517732	4.21166544302099	-0.0510268536152333	0.906160446866614	0.965212549756255
Merged-chr12-103532301-4	chr12	103532198	103532398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028980)	promoter-TSS (NM_028980)	-267.0	NM_028980	74521.0	Mm.248619	NM_028980	ENSMUSG00000021209	Ppp4r4	8430415E04Rik|mKIAA1622	protein phosphatase 4, regulatory subunit 4	protein-coding	7.02544494385017	7.11553858572571	7.28687518510834	7.272753047798	7.11535388885272	7.1783571942738	7.24027690049715	6.83225519364754	-0.114474913213972	0.560020697923898	0.804176966000292
Merged-chr11-61930845-4	chr11	61930728	61930928	+	923.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019921)	promoter-TSS (NM_019921)	-571.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	4.4021128453743	4.48820957056665	4.17448540798041	4.29509620248667	4.50956186640588	4.39784366843421	4.2972494809392	4.40001260200511	0.153081185656803	0.684375415784428	0.870717436816212
Merged-chr6-51556776-4	chr6	51556667	51556867	+	982.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 1 of 6)	L1MB2|LINE|L1	11474.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	5.77251750805747	5.74554393792215	5.81728439716972	5.66945919479224	5.42160658703127	5.36844862407891	5.05481242724745	5.15006694140071	-0.836556764825388	0.00306402715730664	0.0325319792705742
Merged-chr4-149049051-1	chr4	149048951	149049151	+	679.0	f0_balb.idr	intron (NM_019781, intron 2 of 8)	intron (NM_019781, intron 2 of 8)	50761.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	3.34690793916731	3.12675110944366	3.24187415754712	3.33202567237947	3.24524549597658	2.96670367445612	3.05509664128454	3.06370242249727	-0.674580766354804	0.238636834327701	0.548972916561797
Merged-chr13-85376545-4	chr13	85376393	85376593	+	972.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87007.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	4.28183421145784	4.39486314054267	4.77626252694822	4.55183127444057	4.48829774697411	4.94522447902036	4.44868996781178	4.55001988434336	0.22442167456824	0.556445264682833	0.802009061351815
Merged-chr7-19458213-4	chr7	19458159	19458359	+	960.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172279, intron 1 of 16)	CpG	235.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	4.49712911746306	4.37425486792599	4.3739844359807	4.25928806725439	4.27090751787646	4.66599453097359	4.17146155023152	4.53350532793996	0.113174054192812	0.770572630866447	0.910244275228485
Merged-chr4-86541787-3	chr4	86541695	86541895	+	961.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081096, intron 1 of 3)	intron (NM_001081096, intron 1 of 3)	16508.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	4.54741037143905	4.30554766460182	4.33273784264186	4.66663787029589	3.77993004390616	3.52462075618849	3.53960478393473	3.74585946646788	-2.31176715588611	2.39297659633955e-06	7.68635745265582e-05
Merged-chr4-134128372-3	chr4	134128271	134128471	+	849.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080559, intron 1 of 2)	intron (NM_080559, intron 1 of 2)	382.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	4.12688130890979	4.24596049838823	3.93301597283724	3.97296361319176	4.01687646624902	3.9445836904304	4.06392958631755	4.25333465241879	0.00657582602600457	0.987502179046656	0.995315979319888
Merged-chr15-101977534-4	chr15	101977429	101977629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-23242.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	7.93113532395132	8.22221549160295	8.08186171005895	7.9503347942187	8.21766662634183	8.01230096743423	8.05610356893243	8.05060191789513	0.0533347720835382	0.746860261703301	0.900253617240193
Merged-chr7-89243907-3	chr7	89243821	89244021	+	941.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360745, exon 4 of 14)	exon (NM_001360745, exon 4 of 14)	94866.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	5.20878041355173	4.42047824509402	4.57439510351892	5.25808479721602	4.77620934877885	4.70826378642787	4.41809532119419	4.57148248461498	-0.621524779029396	0.126923428136462	0.396309996987419
Merged-chr17-70854211-3	chr17	70854132	70854332	+	876.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164074)	promoter-TSS (NM_001164074)	-700.0	NM_001164074	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	3.08153312206773	3.49572407555698	3.50218192289522	3.2351283031624	3.29684381274141	3.45214767722216	3.43581337337507	3.50012809519586	0.292086934876898	0.582949110691306	0.816821881334209
Merged-chr18-23874777-4	chr18	23874701	23874901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	70831.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	5.97203788789787	5.39764453933909	6.22124776487379	6.40217006197915	5.64541511996407	5.24516893372099	5.83276700931739	5.83536943540218	-0.641141201678938	0.0490848275863292	0.229026758168997
Merged-chr6-97805958-3	chr6	97805856	97806056	+	674.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1102.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	3.90000303351424	4.20894923704954	3.75391746789263	3.44138362107571	3.41995916477504	3.70793941856369	3.5748704056919	3.80239881266232	-0.665472342536528	0.204121808510854	0.507374850118524
Merged-chr17-73952382-4	chr17	73952210	73952410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2114.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	5.93369215666052	5.76136574635807	5.76288136379855	5.5774209298757	5.36621973675785	5.53649447926228	5.48074302521187	5.22215689041006	-0.598209346370489	0.0308006752869848	0.170214100285874
Merged-chr8-14652962-3	chr8	14652887	14653087	+	799.083313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-235549.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.35202606316861	3.12803381523063	3.65314925709932	3.76065001039334	3.7391369267253	3.59842161905419	3.9646047713217	4.0610960024898	1.03134186822552	0.064100819052317	0.268959691070789
Merged-chr7-132713674-4	chr7	132713622	132713822	+	969.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175268, exon 5 of 5)	3' UTR (NM_175268, exon 5 of 5)	63194.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	4.62205616736785	4.19990211538869	4.65927548446626	4.52124913021139	4.54748582798984	4.36456018671515	4.26752366293769	4.61974726390584	-0.108299684060775	0.777272455726671	0.913097260751081
Merged-chr11-63098830-4	chr11	63098716	63098916	+	948.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30166.0	NM_001302258	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	4.33231125185592	4.56458484736514	4.74571246063301	4.12170885234338	4.86661631011342	4.72974574055971	4.88613904699885	4.22965943311545	0.563954676163168	0.165665722001572	0.456520341709248
Merged-chr17-73039291-2	chr17	73039195	73039395	+	952.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68690.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	3.09920362488743	2.99258432052084	3.09960670159398	3.06890300308123	2.83027051520961	3.14970526464322	3.08795020346942	3.15499835205175	-0.0381905750732627	0.947339149491615	0.981132208243319
Merged-chr9-66361931-4	chr9	66361816	66362016	+	810.720825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145617, intron 1 of 77)	RSINE1|SINE|B4	11466.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	4.36282504048785	4.1033480130026	4.04184682355172	4.17902865250197	4.47292730670569	4.21762137301815	4.26042297952087	4.27688303451031	0.350249844783501	0.373550743379563	0.677113210162732
Merged-chr1-144200705-4	chr1	144200609	144200809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23337.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	7.82524742127552	7.91400371888129	7.74093405095695	7.99624714366639	7.76983758402589	7.73674084332173	7.78866099853281	7.66100419544545	-0.181509737433986	0.27210999190372	0.583670356609054
Merged-chr18-67450149-3	chr18	67450017	67450217	+	757.983337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027130)	promoter-TSS (NM_027130)	-981.0	NM_027130	69597.0	Mm.426052	NM_027130	ENSMUSG00000024527	Afg3l2	2310036I02Rik|AW260507|Emv66|par	AFG3-like AAA ATPase 2	protein-coding	3.07701630830666	3.29947115050487	3.14378427074059	3.01683028765324	3.23123491566822	3.38189700370923	3.46937596544679	3.6236748419965	1.08668868781069	0.0441972539093126	0.214460176972593
Merged-chr4-155736161-3	chr4	155736041	155736241	+	882.3777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101506, intron 2 of 3)	intron (NM_001101506, intron 2 of 3)	1337.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	2.74182726251804	2.65078847970041	2.85965215157721	2.70594466471582	2.47159953046905	2.7178329010263	2.67012757972924	2.67787735217763	-0.539213620269826	0.413889520042663	0.708792686767345
Merged-chr3-106483492-4	chr3	106483393	106483593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033207, intron 1 of 1)	intron (NR_033207, intron 1 of 1)	1043.0	NM_001278941	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	5.54928455176379	5.88894417810207	5.60402955791333	5.71434972580961	5.57072436125317	5.6408991479734	5.40836925393971	5.51861321613129	-0.276504395894127	0.30091258799661	0.612811469979239
Merged-chr4-9669231-4	chr4	9669138	9669338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023066)	promoter-TSS (NM_023066)	-76.0	NM_001177849	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	8.99799701097017	8.95063068091312	9.05134759664721	8.96423116149672	8.90076815279656	9.14502099104785	9.24760961396554	8.81578223332384	0.0580850799108892	0.713778091870064	0.885499171196626
Merged-chr11-59202466-4	chr11	59202368	59202568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037964)	promoter-TSS (NR_037964)	-18.0	NM_001302335	67212.0	Mm.282694	NM_026035	ENSMUSG00000036860	Mrpl55	2810038N09Rik|L55mt|MRP-L55	mitochondrial ribosomal protein L55	protein-coding	6.03549756111847	5.78996662400339	5.73312673403245	5.66829080615484	6.52495048209796	6.95531659565595	6.61542257133577	6.41769836991388	1.26720787825592	2.03857765577099e-07	8.20723523530109e-06
Merged-chr2-31742336-4	chr2	31742230	31742430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283047, intron 2 of 11)	intron (NM_001283047, intron 2 of 11)	-17609.0	NM_009594	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	5.55042680264002	5.67115463683862	5.41195032917092	5.2700579534344	5.57358361319845	5.55745920185125	5.52343953463018	5.37839807405324	0.071319450711512	0.799251327851207	0.922485593889919
Merged-chr13-52981077-6	chr13	52980926	52981126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017373)	promoter-TSS (NM_017373)	13.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	5.64158404134715	5.25758726872337	5.51420062034188	5.23336863549304	5.78375808003954	5.4539665785838	5.58943222562095	5.27351013307152	0.24628362723877	0.406761752578248	0.703166843637331
Merged-chr16-87661301-4	chr16	87661203	87661403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37651.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	8.37958671351356	8.74164775138452	8.68866702985069	8.62560555874215	8.77313989020938	8.79203943061696	8.34194344485528	8.18119243205814	-0.0814787752571978	0.675853937588142	0.866938407063941
Merged-chr12-84175859-4	chr12	84175767	84175967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	18148.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	7.49103505315131	7.78586305852441	7.32064123122352	7.5986296070141	7.60595695060141	7.70672568289786	7.64685487947063	7.43906332808116	0.0492959819021923	0.790564176889726	0.918840742585233
Merged-chr15-13423637-4	chr15	13423520	13423720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-249945.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	6.99527900723846	6.77575419605061	7.49405549936942	7.71929033580944	7.07510606716701	6.74776360923837	7.56522807555469	6.93850562309988	-0.256390210820338	0.358286158896406	0.664320653179664
Merged-chr15-9463809-5	chr15	9463708	9463908	+	972.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029341, intron 4 of 4)	intron (NM_029341, intron 4 of 4)	27780.0	NM_029341	75568.0	Mm.82143	NM_029341	ENSMUSG00000039676	Capsl	1700028N11Rik|AW125205	calcyphosine-like	protein-coding	4.86312144375014	4.92188990742178	4.96049647351649	4.733178430435	4.48247422019851	4.60228278941685	4.5813055707656	4.55730487165886	-0.673868445953577	0.0500743731469906	0.231986709595785
Merged-chr5-134456801-4	chr5	134456707	134456907	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001244936)	promoter-TSS (NM_001244936)	-91.0	NM_001081464	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	4.94002495881686	5.29166638939307	5.11582361024778	5.21130046016167	5.21096423145483	5.22274134195428	4.9897014546107	5.04526271548824	-0.0567130229553981	0.852785481214255	0.944667489582269
Merged-chr10-23787806-2	chr10	23787706	23787906	+	805.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011295)	promoter-TSS (NM_011295)	-597.0	NM_011295	20042.0	Mm.371846	NM_011295	ENSMUSG00000061983	Rps12	-	ribosomal protein S12	protein-coding	3.1632473895423	3.05871273751989	3.5830288155688	3.17567345199597	2.97914808162674	3.07440797801869	3.21195113847039	3.53535705679211	-0.152454374653723	0.798491170494319	0.922050695005043
Merged-chr1-74284316-3	chr1	74284217	74284417	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025580)	promoter-TSS (NM_025580)	421.0	NM_001190444	227290.0	Mm.379371	NM_146110	ENSMUSG00000006299	Aamp	AU040907|Aamp-rs	angio-associated migratory protein	protein-coding	4.69708492822336	4.74594559279698	5.22071195810387	4.60259129774302	5.25061801308972	5.14243943077148	5.04411760637303	5.0656044414848	0.607794170271382	0.0707936043800252	0.285242270926058
Merged-chr13-34994744-3	chr13	34994612	34994812	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073427)	promoter-TSS (NR_073427)	-568.0	NM_001110331	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	3.95938998635807	3.71469102239996	3.76399162583082	3.79554705921365	3.81353555516405	3.65015138153874	4.18597861214697	3.65167012409659	0.105602081998337	0.821936501193962	0.931941461548501
Merged-chr12-102730554-4	chr12	102730460	102730660	+	955.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1O|LTR|ERVL-MaLR	13101.0	NM_001142937	64113.0	Mm.291222	NM_022323	ENSMUSG00000096458	Moap1	AA987038|Map-1|Pnma4	modulator of apoptosis 1	protein-coding	4.40924595681851	4.43193274259571	4.08068403763056	4.54642716269479	5.05767150571454	5.41275259151723	4.83641427923733	4.82204589547172	1.36604963214323	0.00036864095322457	0.00599912674088791
Merged-chr6-129434391-4	chr6	129434282	129434482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175526, intron 3 of 5)	intron (NM_175526, intron 3 of 5)	17618.0	NM_001347475	243653.0	Mm.131289	NM_175526	ENSMUSG00000033082	Clec1a	5930406N14Rik	C-type lectin domain family 1, member a	protein-coding	7.81385464301357	8.12788124952875	8.28464389958492	8.3089391908029	7.95987822036687	8.17647273393529	7.94686417611769	7.77782120580927	-0.234282678218751	0.208892818458284	0.51324523526683
Merged-chr19-44009068-4	chr19	44008987	44009187	+	987.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167905, intron 7 of 7)	intron (NM_001167905, intron 7 of 7)	20160.0	NM_001001446	226143.0	Mm.329866	NM_001001446	ENSMUSG00000025197	Cyp2c23	AW107714|BC034834|Cyp2c44|b2b386Clo	cytochrome P450, family 2, subfamily c, polypeptide 23	protein-coding	5.51313704225518	5.28166779425493	5.37780655148255	5.74829715190101	4.99924096337725	5.15447612317827	5.37935899393517	5.37406797631298	-0.507956970674001	0.098697503995226	0.344355160868398
Merged-chr3-88242705-4	chr3	88242628	88242828	+	832.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021375)	TTS (NM_021375)	11956.0	NM_021375	58176.0	Mm.103777	NM_021375	ENSMUSG00000104445	Rhbg	-	Rhesus blood group-associated B glycoprotein	protein-coding	3.94478627280323	4.14395405583823	3.72529687207819	3.7850466569327	4.30295996378611	4.06789382520463	4.02536538736712	4.08649568880123	0.606553537601436	0.159929033513476	0.447715346594711
Merged-chr10-41386071-4	chr10	41385958	41386158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-64300.0	NM_001277229	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	6.38316225878068	6.43732306460834	6.61443054366828	6.42291314392517	6.17618927355232	6.44819584322848	6.5955111132281	6.60970953884082	-0.00687683709429912	0.975728638495283	0.991347073148764
Merged-chr9-7221160-2	chr9	7221060	7221260	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36655.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	3.80669022482506	4.05950988156287	3.91641745620025	4.18077860517778	4.1193038090843	3.98397926121667	4.37079760057125	3.91421615187642	0.256946347989944	0.559304057385535	0.803688371871303
Merged-chr11-11658999-4	chr11	11658909	11659109	+	887.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26916.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	3.91406571903234	3.55847150506203	4.41200164694373	4.43372282162007	4.23441054558415	3.85998539556075	4.35321995014734	4.24991284490285	0.127410249306483	0.800638219068174	0.923103471519366
Merged-chr9-124118679-4	chr9	124118598	124118798	+	858.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2845.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	4.38834379855926	4.54778699126195	3.85700925105169	4.3621758714631	4.25824142801357	4.86768725236676	4.6414669242583	4.42931339573745	0.559282496070729	0.189884866219575	0.48897703139117
Merged-chr11-64435222-4	chr11	64435125	64435325	+	929.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178870)	promoter-TSS (NM_178870)	-107.0	NM_178870	15478.0	Mm.340214	NM_178870	ENSMUSG00000047759	Hs3st3a1	3Ost3a|Hs3st3a	heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	protein-coding	3.98808259506576	4.39405208089036	4.45489574415997	4.14410756884915	5.15368355892656	5.42594892197263	5.19869103302844	5.60024034245999	2.24334092857651	3.64402585569473e-10	2.54791862851174e-08
Merged-chr15-58423909-4	chr15	58423801	58424001	+	937.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145959, intron 4 of 23)	intron (NM_145959, intron 4 of 23)	8433.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	4.71194557937909	4.7743369089728	4.90156755604782	5.41880047669985	4.38985361041673	4.41701296005043	4.8424269099404	5.28730013630582	-0.419536093072076	0.321747212106383	0.633236874703318
Merged-chr17-25476137-3	chr17	25476048	25476248	+	887.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027951, intron 5 of 5)	intron (NM_027951, intron 5 of 5)	4558.0	NM_027951	71840.0	Mm.282330	NM_027951	ENSMUSG00000024175	Tekt4	1700010L19Rik	tektin 4	protein-coding	3.62418222835751	4.08164594752635	4.1985017984005	3.77999236666765	4.11477642719884	3.68071019191694	3.72521203666197	3.68152845646254	-0.313100527183513	0.526473439038095	0.783742270408093
Merged-chr11-5886383-3	chr11	5886261	5886461	+	762.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8105.0	NM_008894	18972.0	Mm.35788	NM_008894	ENSMUSG00000020471	Pold2	50kDa|p50|po1D2	polymerase (DNA directed), delta 2, regulatory subunit	protein-coding	3.35086803568675	3.27908417985577	3.29445228990552	3.36309284845042	3.15778549839204	3.57335991878519	3.33825957492667	3.17122003250706	-0.0345166706466445	0.948650865148641	0.981505068413072
Merged-chr12-109530125-3	chr12	109530023	109530223	+	876.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10873.0	NR_027652	17263.0	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	3.46619774591508	3.23890948157907	3.41191165343635	3.14434548965	3.70684697718245	3.58277731224375	3.39855145388869	3.23078757502534	0.645615831083586	0.225932220762459	0.534543381939136
Merged-chr15-103370595-4	chr15	103370462	103370662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3771.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	8.10155059774005	8.62162546563657	8.04358406302119	7.66255550098509	8.30439150626096	8.64646687326497	8.28174107886166	7.83347277350836	0.186058411920476	0.448841602138968	0.734067745017453
Merged-chr10-94943809-4	chr10	94943756	94943956	+	844.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_018797, exon 1 of 31)	exon (NM_018797, exon 1 of 31)	722.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	3.77310033907267	3.38715172053739	3.37601692238001	3.86560013061294	3.75476668740393	3.55587281887394	3.93731550719136	3.81933822586332	0.425790194356842	0.408107692081656	0.704191133871672
Merged-chr1-88652800-4	chr1	88652714	88652914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	49377.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	6.90036321118285	6.79711759432663	7.00279671463509	7.23682280970867	6.74354795600999	6.54771354227818	6.75691958116978	7.05715825913833	-0.302947415727063	0.169648146730458	0.462321889663741
Merged-chr6-120903664-4	chr6	120903607	120903807	+	932.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007544, intron 1 of 5)	intron (NM_007544, intron 1 of 5)	13117.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	5.82663552086086	5.12726553317239	5.32587484442403	5.55610073299571	4.7051438953882	4.91131811970444	4.70633836466421	4.81123173704696	-1.34903922476873	5.84140204134987e-05	0.00129085736076139
Merged-chr4-126110756-4	chr4	126110714	126110914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	6857.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	6.79990509213557	7.41986023334895	7.17683928316869	6.32947853221773	6.87787530654433	6.96400383731924	6.61714820513808	6.36240976531674	-0.367531583092864	0.201883286046365	0.504364550822865
Merged-chr10-112140002-4	chr10	112139910	112140110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23611.0	NM_001310675	353025.0	Mm.194428	NM_178278	ENSMUSG00000035694	Caps2	D630005B03Rik	calcyphosphine 2	protein-coding	7.50859709782817	7.47517469374326	7.09512860078159	7.58175238675881	7.48516727795138	7.40400984632458	7.36936113591049	7.49561575995664	0.00435180329152977	0.981670939250843	0.993486848211705
Merged-chr1-92907436-4	chr1	92907341	92907541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_138577)	TTS (NR_138577)	452.0	NM_175118	67446.0	Mm.46179	NM_175118	ENSMUSG00000047067	Dusp28	0710001B24Rik|AV005521	dual specificity phosphatase 28	protein-coding	6.41504272389593	6.1433581987512	5.78530835484004	6.15787450768866	6.59754591374141	6.55724581943641	6.6848384121306	6.44538294315387	0.638396773885081	0.0064961746704131	0.0575686275977756
Merged-chr10-117832866-3	chr10	117832784	117832984	+	696.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	GA-rich|Low_complexity|Low_complexity	13090.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	3.16085939409525	2.99338859531383	3.16131250608755	3.00664199597375	2.85949369046844	2.968313742795	2.71167680918864	3.10480504922221	-0.697036057096638	0.255315874120571	0.566865111326869
Merged-chr7-45162334-5	chr7	45162290	45162490	+	957.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1531.0	NM_182993	72961.0	Mm.255631	NM_182993	ENSMUSG00000070570	Slc17a7	2900052E22Rik|AI851913|Vglut1	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7	protein-coding	4.81000215373825	4.53161477694459	4.13450933546386	4.37743509918699	4.26918514779884	4.3631740392357	4.11749024596178	4.53364833898129	-0.360139876051821	0.37830794473429	0.680900730731587
Merged-chr2-91456057-4	chr2	91455962	91456162	+	929.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1469.0	NM_172668	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	4.62430753811943	4.67656255713735	4.0573749820265	4.16107667114291	4.70905284468517	4.28984610959037	3.92852336161657	4.39079647231607	-0.082604272013882	0.855996013573122	0.945801681068115
Merged-chr18-61419907-3	chr18	61419808	61420008	+	828.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-19477.0	NM_133249	170826.0	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	3.40478616840848	3.37716435745654	3.56201076134539	3.22483172673631	3.39730826423417	3.46216328881696	3.27742040731236	3.40339178838838	-0.000888751420116764	0.998631165869981	0.99941052934477
Merged-chr4-145211431-4	chr4	145211292	145211492	+	934.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011610)	TTS (NM_011610)	-16387.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	4.82200449246187	4.70093197558452	4.63585306779934	4.85511080113751	4.84032980211593	4.54753308378227	4.833595687767	4.36584721757427	-0.191947042872808	0.592071939557423	0.821919268747471
Merged-chr6-67056298-4	chr6	67056203	67056403	+	782.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040278, intron 1 of 6)	intron (NR_040278, intron 1 of 6)	-18896.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	4.33710960969865	4.80242515049046	4.42462595713113	4.73523965502475	4.32378187143852	4.04245583648043	4.44535759662138	4.14204735022234	-0.81384266405711	0.0441596455840754	0.214343663506823
Merged-chr2-90572303-4	chr2	90572219	90572419	+	828.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	8328.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.82071291553233	4.06336572496171	3.39724429007168	3.41838920191398	3.89545082548409	4.1840845923801	3.64131129786102	4.17863330254487	0.813162462259749	0.116310035985536	0.377305261663223
Merged-chr7-120870253-4	chr7	120870126	120870326	+	995.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267710, intron 2 of 17)	intron (NM_001267710, intron 2 of 17)	19037.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	5.05896523381209	4.74007716337616	4.78072691821471	5.25386166932445	4.67489938125538	5.06556844460442	4.75834974113847	4.81596888601709	-0.327937695316494	0.35000243295042	0.65752126408662
Merged-chr2-60175341-3	chr2	60175244	60175444	+	833.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34592.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	4.27668739501994	4.1353191861701	4.4722849473732	4.15467320908982	4.02147209951786	4.1190543027654	3.92620603056659	4.23179743371389	-0.464950214957601	0.261065162279186	0.572963652746366
Merged-chr7-122813974-4	chr7	122813872	122814072	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	142228.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	5.0487312176165	5.09926016894827	4.7090506137366	5.0054564061517	5.28998474326539	4.70482866150159	5.52975599086593	5.11163592907188	0.427379550682909	0.217342809753259	0.524235535136662
Merged-chr1-80609859-4	chr1	80609747	80609947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 4 of 55)	L1MA8|LINE|L1	55505.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	5.82316527459047	6.21804769214042	6.23431309268148	6.15766544624864	5.58157627892926	5.82015902268758	5.84182414779957	5.52128136510362	-0.691749466286266	0.00749991340089289	0.0641013852019878
Merged-chr2-27679916-4	chr2	27679808	27680008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	2707.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.48393633965913	5.49998709653992	5.53778230987211	5.2059385808494	5.38378060592695	5.32393764229858	5.31560209683989	5.48103722573401	-0.077207720844786	0.786714390563007	0.917133702194411
Merged-chr14-98817205-3	chr14	98817101	98817301	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	228935.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	5.50323165952906	5.88319579498818	5.45271410433453	6.10211085181904	4.19189956386599	4.67938732339604	4.83942720622659	4.53541731415714	-2.35387294864674	1.4276003988873e-10	1.06738622681091e-08
Merged-chr2-165955013-4	chr2	165954910	165955110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37627.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	6.36720638805537	6.369668583717	6.3129547281754	6.84389161043763	6.31693143628051	6.1957366204311	6.47181982563511	6.43396709466238	-0.229134357553729	0.347948636638869	0.655791876484617
Merged-chr2-170128866-2	chr2	170128766	170128966	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159683, intron 2 of 6)	intron (NM_001159683, intron 2 of 6)	2354.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	2.48733881671822	2.35363683534274	2.26072955202888	2.4195340854071	2.54737591260345	2.66262464062771	2.61034727120964	2.94979832426713	1.64418116981592	0.0218159730766165	0.135702101513631
Merged-chr5-135909163-4	chr5	135909037	135909237	+	962.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018871, exon 2 of 2)	3' UTR (NM_018871, exon 2 of 2)	21218.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	5.89677390469532	5.74017372410707	5.72746262691448	5.88744099501527	5.39882596719632	5.19356267601459	4.90546526110827	4.79221924796132	-1.24313053313915	6.38128837772796e-05	0.00139030831171809
Merged-chr14-98406545-3	chr14	98406439	98406639	+	983.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-236774.0	NM_007826	13134.0	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund family transcription factor 1	protein-coding	4.46691656303406	4.15688514473712	4.53849911692689	5.00530204796684	3.45283085396354	3.53245821229029	3.61521327409184	3.87539868899542	-2.76930132390518	1.56637563520238e-07	6.4596205873737e-06
Merged-chr8-70720835-4	chr8	70720683	70720883	+	966.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195253, intron 2 of 3)	RLTR25B|LTR|ERVK	2240.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	4.40486114900153	4.91328791623621	4.63522415838758	3.47795043270954	4.19333893851585	4.08937118517374	4.29893225892923	4.40266436209513	-0.499638138716094	0.336659006100774	0.646601494744927
Merged-chr6-43265492-4	chr6	43265376	43265576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133674)	promoter-TSS (NM_133674)	-168.0	NM_133674	54324.0	Mm.320978	NM_133674	ENSMUSG00000033542	Arhgef5	2210412D05Rik|AA717842|AW495314|Tim1	Rho guanine nucleotide exchange factor (GEF) 5	protein-coding	5.66583354348074	5.31005918264184	5.46722956683347	5.17770028128348	5.32599306780763	5.2702736041085	5.29774758953245	5.40813722561705	-0.130983967700513	0.657106016388168	0.857119411029951
Merged-chr6-38981522-4	chr6	38981415	38981615	+	980.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	62529.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	5.11154913194988	4.91225032006536	4.80950282120867	5.5820742470893	5.06684538198923	4.99054697452399	5.51014866644714	5.53448802758443	0.245926021681599	0.501876954069126	0.769448365511349
Merged-chr2-73487755-3	chr2	73487631	73487831	+	936.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-1978.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	3.34139397997006	3.80593638864281	3.34180022404479	3.49091946644696	3.63010985602447	3.4547238055718	3.26922738226188	3.34015719604461	-0.248106027592479	0.644505601014482	0.850281989409482
Merged-chr13-44760757-2	chr13	44760657	44760857	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	29486.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	3.34491706194478	3.20977415467475	3.06891044981435	2.88110543155128	3.10334332878782	2.90419970772382	2.93035102586132	3.34335938349423	-0.187769565967017	0.758609788131358	0.905219520105318
Merged-chr11-86908473-4	chr11	86908386	86908586	+	846.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	85276.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	4.2033585290988	4.7561783430425	4.1043812254558	3.38793378745468	4.51382181971842	4.42756303578509	4.48090818447503	4.24844704789139	0.491795646575266	0.339177860737647	0.648487712540904
Merged-chr6-34869671-4	chr6	34869565	34869765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	6519.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	7.67679077214351	7.72056664652307	7.94584597382309	7.9326024884691	7.53998872626639	7.7696740014659	7.57256180322922	7.28745851755463	-0.363121586394774	0.0505914770621295	0.233289112840458
Merged-chr3-133543267-4	chr3	133543163	133543363	+	932.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040400, intron 1 of 10)	intron (NM_001040400, intron 1 of 10)	1127.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	4.08531179136304	4.25137476029711	4.17682090168263	3.87849050013806	3.82886870320803	3.88884907264959	4.24186488149059	4.25887341711631	-0.0821298296419433	0.852062715196004	0.944232099841764
Merged-chr4-136907229-1	chr4	136907129	136907329	+	550.0	f0_balb.idr	Intergenic	Intergenic	-8385.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	3.41663025760313	3.43279742371805	3.17377780162856	3.28000056078585	3.81315921235628	3.47412737357211	3.34785634747232	3.29940268035259	0.61966670142349	0.246806010398719	0.558074330116374
Merged-chr8-125569962-4	chr8	125569872	125570072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357372)	promoter-TSS (NM_001357372)	-109.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	8.41759097289435	8.43457000579123	8.21686479642109	8.1653824701552	8.22708061056803	8.20952688270242	8.33362587451299	8.03338560730563	-0.132306887167451	0.422730019373643	0.714884771893479
Merged-chr9-78463569-4	chr9	78463477	78463677	+	996.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026658, intron 9 of 11)	intron (NM_026658, intron 9 of 11)	15367.0	NM_026658	68291.0	Mm.291779	NM_026658	ENSMUSG00000032342	Mto1	2310039H01Rik|5730419A02Rik	mitochondrial tRNA translation optimization 1	protein-coding	5.12255046132614	5.17620173439711	5.48140890164999	5.69425598170447	5.56877785060335	4.99586608427414	5.06396282009274	5.15389748305379	-0.312584803944489	0.354188813540443	0.66093764573708
Merged-chr6-42296369-4	chr6	42296292	42296492	+	888.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013491, intron 7 of 22)	intron (NM_013491, intron 7 of 22)	9707.0	NM_013491	12723.0	Mm.386757	NM_013491	ENSMUSG00000029862	Clcn1	Clc-1|Clc1|SMCC1|adr|mto|myotonia|nmf355	chloride channel, voltage-sensitive 1	protein-coding	3.9295829088505	3.83026098489727	4.07816740966903	4.4628695396148	4.17488885525858	4.05181426671852	4.06059944876889	3.92792291470343	-0.154146638849926	0.735714895248494	0.895629391634899
Merged-chr4-10920600-6	chr4	10920581	10920781	+	931.263916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	46183.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	4.03924185341237	3.83991157819912	3.99042501067129	3.93392888295474	4.11752611916072	4.30246232803405	4.06981237926511	4.33681302595354	0.679840360667117	0.0964723667557315	0.34034441030642
Merged-chr18-84849906-4	chr18	84849817	84850017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1421.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	6.00145728374186	5.86232519713108	5.65225939398856	5.49943446926415	5.66100249313406	6.25420676772933	5.79810456788426	5.5933616958832	0.145830286082629	0.617227966483554	0.835415570296695
Merged-chr7-3941145-4	chr7	3941045	3941245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25644.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	6.18234876089701	6.32009057389787	6.27392857623649	6.22188602168923	5.83047000402955	5.83417381978548	5.68191589066692	5.6791768828473	-0.770774189446565	0.00120305935499918	0.0155969343499551
Merged-chr6-34610666-3	chr6	34610631	34610831	+	767.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 1 of 13)	MER94|DNA|hAT-Blackjack	12227.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	3.32122765947357	3.09316577501337	3.37793550043272	3.04553763140617	2.92631413962248	3.74806770571205	3.36382468529181	3.31982109510412	0.557407335333046	0.349478542770331	0.657005261102145
Merged-chr4-129063280-4	chr4	129063178	129063378	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	ID4_|SINE|ID	5007.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	5.62565475927968	4.96051161122507	4.85914736791271	5.30441262376025	4.78307710571394	4.87369342579426	5.14427851175449	4.8163283881739	-0.607209828143475	0.0838358315409232	0.314833315039114
Merged-chr7-90023195-4	chr7	90023099	90023299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5960.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	7.6473807777727	7.46461126371648	8.38986692490454	7.84242833367904	7.61514254587214	7.56009844952938	7.72556452342788	7.61744524959955	-0.329677496164453	0.145327782332606	0.424764350127399
Merged-chr12-99953127-3	chr12	99953010	99953210	+	716.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028354, intron 15 of 15)	intron (NM_028354, intron 15 of 15)	-11389.0	NM_001164426	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	3.21905761500916	3.44177274958717	3.2799956658623	3.01839268103864	3.06823112091968	3.33339112110768	3.37931165545672	3.63667453723581	0.44591439406104	0.430609062477023	0.721150121360219
Merged-chr9-54555253-4	chr9	54555136	54555336	+	963.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019686, intron 1 of 5)	intron (NM_019686, intron 1 of 5)	4843.0	NM_019686	56506.0	Mm.42192	NM_019686	ENSMUSG00000037493	Cib2	2810434I23Rik|AI449053	calcium and integrin binding family member 2	protein-coding	5.06215094313544	5.42876274356616	5.28436563354416	5.07198987219905	5.03696535732697	5.16796669336718	5.2580385351833	4.95166213182964	-0.204146936426565	0.510363186183816	0.774681535183884
Merged-chr10-95515672-3	chr10	95515575	95515775	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	CpG	513.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	5.56431013952171	5.56079228468473	5.61896342139047	5.79877940521319	5.62112029147212	5.62695209750577	5.71484256052	5.66646433820807	0.00418348961549866	0.987211403720387	0.995258250959001
Merged-chr3-79238329-2	chr3	79238229	79238429	+	959.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	25410.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	3.48173444891109	3.59546120583082	3.42163831920125	3.15869243357365	3.99834986498095	3.33766635111913	3.52605309311947	4.08294599208286	1.12564431307683	0.0382312702576662	0.195960635140796
Merged-chr1-139268018-1	chr1	139267918	139268118	+	547.0	f1_c57bl6.idr	intron (NM_133239, intron 5 of 11)	intron (NM_133239, intron 5 of 11)	109058.0	NM_133239	170788.0	Mm.95700	NM_133239	ENSMUSG00000063681	Crb1	7530426H14Rik|A930008G09Rik	crumbs family member 1, photoreceptor morphogenesis associated	protein-coding	3.17357985094134	3.0040004676039	3.11867711046382	2.86756865009385	2.82973715331906	2.83358807937058	2.92689662075258	3.3247242180424	-0.192095321029559	0.756944443451214	0.904554066545557
Merged-chr7-44753020-4	chr7	44752912	44753112	+	731.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133945, intron 2 of 14)	ORR1E|LTR|ERVL-MaLR	4383.0	NM_133945	101568.0	Mm.28816	NM_133945	ENSMUSG00000002205	Vrk3	AI428238	vaccinia related kinase 3	protein-coding	4.35132574987688	4.65912288087226	4.26909832843278	3.98133706714662	3.98267002362293	4.3538585941082	4.06749012333853	3.54502937568712	-0.808721439774021	0.0993202250804311	0.345663715088989
Merged-chr6-13874129-4	chr6	13874028	13874228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045995, intron 1 of 2)	intron (NR_045995, intron 1 of 2)	2559.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	7.69262877446306	7.92866823478726	7.79779221057962	7.93429755438124	7.7504387254898	7.91227767564961	7.73681232531855	7.48085143105036	-0.155427578625308	0.381814458242098	0.684017296351366
Merged-chr17-80207861-1	chr17	80207761	80207961	+	678.0	f0_balb.idr	promoter-TSS (NR_036615)	promoter-TSS (NR_036615)	-556.0	NM_001195485	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	4.0893386082211	4.66255187431139	4.08994875737244	3.8362658225309	4.11618434621277	3.87886297592144	4.0226604703518	4.57288006865954	-0.0748294949410725	0.876648375414424	0.953733297368375
Merged-chr9-75434716-4	chr9	75434636	75434836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6788.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	7.49243239220832	7.83547658225326	7.2322422458757	7.72866765207267	7.75992724772359	7.44449525284007	7.64826697967922	7.4979419110344	-0.00345070413572921	0.986398320686452	0.995010290574724
Merged-chr3-129532322-4	chr3	129532235	129532435	+	920.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130450)	promoter-TSS (NM_130450)	-51.0	NM_130450	170439.0	Mm.314113	NM_130450	ENSMUSG00000041220	Elovl6	C77826|FAE|LCE	ELOVL family member 6, elongation of long chain fatty acids (yeast)	protein-coding	4.88920184557073	4.54774221163203	4.61689707112719	4.68596594844154	4.34132487976118	4.5403905490016	4.34547027110696	4.26571944864635	-0.715790772616928	0.0521543333631162	0.237754149766443
Merged-chr2-158107460-4	chr2	158107352	158107552	+	829.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15655.0	NR_040609	72340.0	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	3.99458944219554	3.70048611944415	4.08934184532551	3.85547743124617	4.05426800351246	4.01575439644898	4.15790624187984	4.21592423844556	0.542313642722972	0.200407410634426	0.502485838102051
Merged-chr11-120580356-4	chr11	120580258	120580458	+	973.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133796, exon 2 of 6)	exon (NM_133796, exon 2 of 6)	1262.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	5.3891417431665	4.81644083956951	4.94179700508881	4.85889168786368	5.30977655981009	4.49955647346558	4.80659714247945	5.28165302937159	0.0229217768703571	0.952107207149613	0.983057804080512
Merged-chr4-97773361-4	chr4	97773255	97773455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-4271.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	7.86130746047503	7.61276235865439	7.86261992883462	7.86018648927946	7.93989113432085	8.02521947844013	7.7646202509567	7.71765624714979	0.0839815597653021	0.627777752211125	0.841327621340482
Merged-chr1-136580412-2	chr1	136580312	136580512	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44489.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	3.25197060818858	3.08765496429969	3.36462345711869	3.0813332809644	3.18540831228563	3.24124134540868	3.40279565769209	3.4656693189066	0.4931239647451	0.361454082336297	0.666734221172781
Merged-chr2-10080494-4	chr2	10080370	10080570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025280)	promoter-TSS (NM_025280)	40.0	NM_020615	11949.0	Mm.12677	NM_020615	ENSMUSG00000025781	Atp5c1	1700094F02Rik|Atp5f1c	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	protein-coding	8.09772390438545	8.35189248637804	8.45108508149845	8.52312452841985	8.37442919239289	8.49629843562614	8.50375321499015	8.43043358621443	0.0989602290067582	0.546162263874252	0.796233077591049
Merged-chr11-44401959-4	chr11	44401870	44402070	+	879.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303244, intron 1 of 7)	intron (NM_001303244, intron 1 of 7)	1907.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	4.13379185520813	4.32839554385334	4.30909020408795	4.01035838075974	4.20485477857685	3.87842567366996	4.36738263323323	3.98353435402236	-0.166754651338789	0.696297152788554	0.877172308963588
Merged-chr13-10109865-4	chr13	10109783	10109983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 3 of 4)	intron (NM_033269, intron 3 of 4)	250920.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	6.2802298607696	5.68464560555876	6.57684454150191	6.87558329658803	5.72389661853613	6.04926361557269	6.46805330617031	6.07680619652473	-0.50117048689607	0.12230868320128	0.38754495021296
Merged-chr1-16571142-4	chr1	16571028	16571228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073122, exon 5 of 5)	non-coding (NR_073122, exon 5 of 5)	48210.0	NM_025773	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	5.93000852804986	6.10885652565049	6.41381762188627	6.81440363497438	6.49661122880868	5.92819173483075	6.01699006715751	6.24913697340683	-0.26764875073176	0.364548915234448	0.669284676909589
Merged-chr9-41157251-12	chr9	41156898	41157098	+	924.3784789999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	CpG	1064.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	3.83898215718704	3.96008827226869	3.88749985973626	3.60313552827879	3.91176745235198	3.74530831922753	3.49524440298127	3.78752421868883	-0.206024710012294	0.666219704907264	0.861914264044268
Merged-chr6-52012610-4	chr6	52012506	52012706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018773)	promoter-TSS (NM_018773)	-57.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	8.41332918850653	8.48027156970783	8.43506456954342	8.039157443466	8.43843584763378	8.49078707691331	8.30161013238197	8.22108061158423	0.0282385348086512	0.872159446761398	0.951934205247793
Merged-chr1-9815965-4	chr1	9815878	9816078	+	891.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177547, intron 1 of 16)	intron (NM_177547, intron 1 of 16)	17848.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	3.77195693676831	3.93452234140808	3.66027267328307	3.95224052434286	4.1568514559092	3.715231110872	4.08606970095687	3.97070288355305	0.432352528174355	0.34037138571572	0.649455684748532
Merged-chr17-30574744-3	chr17	30574639	30574839	+	992.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172618, intron 1 of 11)	intron (NM_172618, intron 1 of 11)	1548.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	3.55266960744923	3.36670907023905	3.1301601512431	3.06184608718322	3.9092392904064	4.30619505707195	4.03615806623695	4.09440185606868	2.55512372000797	4.79128255825075e-07	1.78367521555298e-05
Merged-chr11-61653220-4	chr11	61653119	61653319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027817)	promoter-TSS (NM_027817)	-102.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	6.50129908193927	6.94773276949145	6.23394275103991	6.24607815886559	6.9686748297217	7.27256506135382	6.51968819824158	6.59744295425601	0.515973829598756	0.0607781459469159	0.260500249916031
Merged-chr14-120303126-3	chr14	120303015	120303215	+	981.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	-3337.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	3.86137028495993	3.47284515508628	3.95594014259412	4.05558377837514	3.67254216471616	3.76831636186748	3.84557363855904	3.85964790353336	-0.226343539954876	0.636532919153149	0.846283673250294
Merged-chr12-70233744-4	chr12	70233622	70233822	+	827.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045174, intron 4 of 4)	intron (NR_045174, intron 4 of 4)	5881.0	NR_045174	414124.0	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	3.88995586651482	3.50862288971314	3.47330372771841	3.3351993685858	3.70663544942204	3.5908836073356	3.57659816908933	4.09236453104847	0.614536983940083	0.230939912581919	0.540396396919272
Merged-chr4-86943793-1	chr4	86943693	86943893	+	684.0	f1_balb.idr	Intergenic	Intergenic	69379.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	3.70024447184265	3.66062240496457	3.43217584987307	3.4843203513112	2.57017996542849	2.75290884064376	2.71909589287348	2.72464393095471	-6.42458819579553	8.66857077939506e-09	4.64623644206747e-07
Merged-chr18-9712319-3	chr18	9712233	9712433	+	696.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 1 of 9)	intron (NM_130449, intron 1 of 9)	4685.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	2.85652770852286	2.70623267788242	2.91349472081147	3.039856422747	2.71759935274323	2.63132803128197	2.44816292229315	2.73425271714278	-1.23133391850596	0.0771967290881471	0.30040927121345
Merged-chr7-81307757-4	chr7	81307628	81307828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 9 of 21)	intron (NM_008803, intron 9 of 21)	37506.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	5.50374441446113	5.13770777303435	5.78731378946535	5.87794977318354	5.67731343298159	5.49819398211264	5.92843679038716	5.68766518370122	0.145151106889761	0.633561106760944	0.844711516172605
Merged-chr11-18925119-4	chr11	18925012	18925212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010789, intron 8 of 11)	intron (NM_010789, intron 8 of 11)	93857.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	6.75232426546745	6.53977061227973	6.75351179361467	7.09680031230927	6.703640959554	6.64372698566292	6.74723988671236	6.44351290338167	-0.249120663667112	0.27230118962596	0.583781403463335
Merged-chr10-71261836-3	chr10	71261723	71261923	+	935.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145420, intron 3 of 6)	intron (NM_145420, intron 3 of 6)	23439.0	NM_145420	216080.0	Mm.270530	NM_145420	ENSMUSG00000019927	Ube2d1	UBCH5	ubiquitin-conjugating enzyme E2D 1	protein-coding	3.83167657246071	4.00900504900286	4.4569440980175	4.44938086217299	3.947530337764	4.06538884397775	3.69932931130404	4.22292398192598	-0.589606646740375	0.210155408315744	0.514589641224702
Merged-chr7-98084852-4	chr7	98084745	98084945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 16 of 48)	intron (NM_008663, intron 16 of 48)	24403.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	5.48562422625843	4.93458016592108	5.51183878250704	5.34682197231781	4.88586545638444	5.27767845527275	5.32520089001868	5.13218670270658	-0.328549477498598	0.308621335273265	0.62095027909138
Merged-chr11-48816444-4	chr11	48816314	48816514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145377, exon 1 of 6)	exon (NM_145377, exon 1 of 6)	977.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	5.43165713064798	5.33330086848521	5.64433523206451	5.54165962740779	5.57803024334637	5.6350904807038	5.22128222157755	5.39969164068077	-0.0391336833973032	0.890002089717368	0.958823350143674
Merged-chr19-3388267-2	chr19	3388167	3388367	+	990.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039658)	promoter-TSS (NM_001039658)	-590.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	3.72920549128747	3.44421320130426	2.96002817170295	3.14544675847521	3.53131340482622	3.42559132908944	3.75579115299769	3.36891923607581	0.603038279073295	0.305490434590866	0.617899566472771
Merged-chr13-95375236-4	chr13	95375048	95375248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_025630, exon 1 of 14)	5' UTR (NM_025630, exon 1 of 14)	209.0	NM_025630	66549.0	Mm.36785	NM_025630	ENSMUSG00000021681	Aggf1	2010009L17Rik|2310029P06Rik|AW112072|Peg3|VG5Q	angiogenic factor with G patch and FHA domains 1	protein-coding	6.50610744309571	5.8400509555229	6.52263675384719	6.24478471205776	6.0469443637809	6.5687934149457	5.991373276296	6.16773324744291	-0.139621128852639	0.609581128077669	0.831081414209299
Merged-chr14-99104680-1	chr14	99104580	99104780	+	1000.0	f0_balb.idr	intron (NM_029320, intron 2 of 17)	intron (NM_029320, intron 2 of 17)	-4910.0	NR_153390	72662.0	Mm.163339	NM_028315	ENSMUSG00000033166	Dis3	2810028N01Rik	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding	3.70430264287708	3.61907367650257	4.20333150669813	3.99910162005094	3.6095013602045	3.51060829550472	4.02541403727886	3.80900242096097	-0.437983655643194	0.38150544967142	0.683742228786267
Merged-chr10-95291763-3	chr10	95291659	95291859	+	690.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	B3A|SINE|B2	31950.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	3.60199550303762	3.27335363279408	3.13455899974776	3.42255983448977	3.59630979946386	3.44346158701619	3.43266682412653	3.64841515125413	0.548205548272743	0.293306294827838	0.605875232443865
Merged-chr11-3169639-2	chr11	3169550	3169750	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 7 of 32)	MTC|LTR|ERVL-MaLR	23813.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.28159972761115	4.49282640466033	4.96640429296764	5.06563333066412	3.41342469937516	3.62160393959915	3.47807037932984	3.64137582624395	-4.57405768382851	2.51791780257775e-12	2.51012424747453e-10
Merged-chr11-97830110-4	chr11	97830034	97830234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010688, intron 4 of 6)	intron (NM_010688, intron 4 of 6)	-10646.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	6.97964948434306	7.06877106193978	7.10001360405904	6.80996965972607	7.031348967066	6.8794807121553	6.86856232144855	6.71280293792818	-0.139485054909541	0.489740845943637	0.761935283416117
Merged-chr14-76179588-4	chr14	76179501	76179701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68710.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	8.01067052596691	8.30210021636753	8.28539647379987	8.29643782615273	7.96264970439987	7.85719755019755	8.16778550384077	7.73460979408815	-0.372802902397632	0.0340785688022252	0.182217431548496
Merged-chr4-53159903-4	chr4	53159821	53160021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013454)	promoter-TSS (NM_013454)	-26.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	8.71778346716734	8.92255786440972	8.78611495711161	8.61562029436901	8.74912322385292	8.87532727909195	8.7785413453228	8.93010035633699	0.0890353838799843	0.556954274660513	0.802252160011434
Merged-chr11-9347869-4	chr11	9347828	9348028	+	765.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 28 of 61)	MIRb|SINE|MIR	155986.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	3.4461966287416	3.27707791453422	3.90574493448742	3.51476555417808	3.51228244206354	3.79047724854932	3.79986686988492	3.61641355150917	0.403324592397492	0.430953191411245	0.721325279470979
Merged-chr17-28523213-4	chr17	28523112	28523312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7649.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	6.16282618259831	6.15798946226811	5.48818855898286	5.86553087965372	5.40364008883232	5.9638381390595	5.65836944487114	5.78425068311899	-0.386532727382119	0.18789608143231	0.486389612694853
Merged-chr5-66137424-4	chr5	66137359	66137559	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	13519.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	4.79552269187785	4.51415298338435	5.01725523832958	5.23109624331167	5.18166890158584	5.22321719214271	4.88807590032399	5.14222532871496	0.347029019074641	0.326387365415629	0.637923349237677
Merged-chr18-39141195-4	chr18	39141099	39141299	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 10 of 21)	MTD|LTR|ERVL-MaLR	148054.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	5.4628942201987	5.33555938839505	5.62283727868267	5.83032661396049	5.25060043488965	5.28804114173451	5.79895709167207	5.24546223090335	-0.301819902033813	0.330525268338468	0.641871774561785
Merged-chr12-17683478-1	chr12	17683378	17683578	+	658.5	f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-7331.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	2.61689439971216	2.87433498402073	2.46507315653375	2.72450069721162	2.76931659515675	3.10199920226191	2.86686188813276	2.81603610836552	0.956721375049979	0.153119359560578	0.437555330104179
Merged-chr8-71469108-4	chr8	71469027	71469227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001294259)	promoter-TSS (NM_001294259)	-67.0	NM_001294259	66498.0	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	8.45382619598435	8.85263119066744	8.51044537578011	8.55594650460863	8.53462671405245	8.64829354638238	8.57466087100815	8.39726720055173	-0.0787916686128055	0.631611724833271	0.843527608719204
Merged-chr1-46873636-2	chr1	46873536	46873736	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356417, intron 2 of 10)	intron (NM_001356417, intron 2 of 10)	-20018.0	NM_172653	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	4.63743574728655	4.69433985237622	4.47219660821333	4.71593546207312	4.6486003730332	4.50944465726427	4.57748433280615	4.81567314464257	0.00563736746677827	0.987141745210119	0.995258250959001
Merged-chr7-41633030-4	chr7	41632918	41633118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360680)	promoter-TSS (NM_001360680)	-513.0	NM_001360675	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	8.17287926546996	8.10278051531602	8.11775633587039	8.46245726155502	8.2619722450605	8.18828137645712	8.4991741824828	8.21692648389907	0.0844417021110089	0.628084948982188	0.841427212108636
Merged-chr10-128548502-3	chr10	128548426	128548626	+	869.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134003)	promoter-TSS (NM_134003)	642.0	NM_018860	67945.0	Mm.290786	NM_018860	ENSMUSG00000093674	Rpl41	1810055P16Rik|2210411K19Rik	ribosomal protein L41	protein-coding	3.62339654482	3.43478583801027	3.14963522707612	3.22884525787755	3.42250244307496	3.63790628491052	3.50603478708185	3.76248021469046	0.733587036943839	0.160435167994393	0.448621443584546
Merged-chr16-75617784-4	chr16	75617671	75617871	+	691.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24880.0	NM_198302	224344.0	Mm.273214	NM_198302	ENSMUSG00000032940	Rbm11	A330018F01	RNA binding motif protein 11	protein-coding	4.19312544527029	3.70328426495453	3.58291371252356	3.9005084643507	3.80258278779401	3.57289504287102	3.83732230529556	3.80165153672916	-0.3061991941813	0.525088949579259	0.783229855070132
Merged-chr1-174040940-4	chr1	174040837	174041037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146717)	promoter-TSS (NM_146717)	-996.0	NM_146717	258712.0	Mm.223146	NM_146717	ENSMUSG00000045381	Olfr433	MOR123-1	olfactory receptor 433	protein-coding	7.77166104226085	8.00294997941283	7.98850231732253	7.60960591361711	7.8370763928249	7.79155977289553	7.7430434824339	7.69504999772562	-0.0989637730497855	0.579645068913531	0.815450951857779
Merged-chr12-84218893-4	chr12	84218803	84219003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163501)	promoter-TSS (NM_001163501)	-22.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	5.62266333919009	5.98400985340339	5.78097960946869	5.68636481367807	5.87767712224632	5.9317070365786	5.97559832224917	5.96011135264789	0.261452486529778	0.293507151579791	0.606008746948365
Merged-chr10-81524443-4	chr10	81524277	81524477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010304)	promoter-TSS (NM_010304)	-152.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	7.23581675222232	6.96075261058732	7.40494396970287	7.42885917833367	7.01599316085085	6.94635231672129	6.98269948732346	6.85227643914492	-0.443024099190163	0.0282044824719186	0.160869350045482
Merged-chr18-62189464-4	chr18	62189367	62189567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9367.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	7.4739449641416	7.41413389101836	7.24682171690355	7.20938915743753	7.08610486465546	7.44535746457005	7.2106063797159	7.27401130274699	-0.110128208063368	0.561904669675511	0.805222493664379
Merged-chr11-87443496-4	chr11	87443388	87443588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	15897.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	6.3226821443476	7.17284279227517	6.94229246276651	6.5859991531859	6.49253370668061	6.63400570224666	6.73808274419932	6.55509177969277	-0.270533697504048	0.280713437422311	0.592852320632664
Merged-chr1-151040569-4	chr1	151040477	151040677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	-47142.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	5.75909799799384	5.63677409200872	5.55352670436183	5.67788926259461	5.65942165632819	5.93371900904007	5.49758837198476	5.75601967253348	0.093103785058294	0.723169218546418	0.889499763377896
Merged-chr5-88566638-2	chr5	88566538	88566738	+	880.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289774, intron 1 of 17)	intron (NM_001289774, intron 1 of 17)	1598.0	NM_001289775	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	3.04671192101357	3.363942945447	3.55924559314014	2.69527387152361	3.35821929342061	3.52781381733863	3.16752412138661	3.23896287475111	0.431698811380489	0.499887532898625	0.768532003632796
Merged-chr17-5492562-4	chr17	5492464	5492664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146073)	promoter-TSS (NM_146073)	-36.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	7.86860073571198	7.64137617124182	8.05672354871466	8.21830424570051	7.64088955103792	7.73595467320814	8.34357888359017	8.13818405546284	0.0333433975125479	0.881317174139354	0.955384724180766
Merged-chr4-59783941-4	chr4	59783857	59784057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013577)	promoter-TSS (NM_001013577)	-102.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	7.98158493486998	8.02034941143785	7.55005086747529	7.791143131317	7.9598604962121	8.08355586761828	7.99753857754621	7.9910290380667	0.204924079588157	0.24401785812846	0.555078045563441
Merged-chr2-119787534-4	chr2	119787412	119787612	+	916.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163701)	promoter-TSS (NM_001163701)	25.0	NM_177294	68925.0	Mm.30496	NM_177294	ENSMUSG00000034032	Rpap1	1190005L06Rik|A730023M06Rik|AU041788|AW107702|mKIAA1403	RNA polymerase II associated protein 1	protein-coding	5.02659689475902	4.57767290785848	4.86000199382522	4.67067295196442	4.93823860767082	4.84310339292858	4.68622599999966	5.05491388853773	0.21869221150822	0.521581808778757	0.781471701856069
Merged-chr10-93594143-4	chr10	93594037	93594237	+	982.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045810, intron 1 of 3)	intron (NR_045810, intron 1 of 3)	-4479.0	NM_027246	69878.0	Mm.259642	NM_027246	ENSMUSG00000020018	Snrpf	2010013O18Rik|SMF|sm-F|snRNP-F	small nuclear ribonucleoprotein polypeptide F	protein-coding	5.05331818400474	5.0997117526624	4.72275496171764	5.11369113847367	5.59612247269223	5.68403771704405	5.53360035380269	5.50791538418676	1.00490889208928	0.00064867269484159	0.00949647752902705
Merged-chr10-8888379-4	chr10	8888278	8888478	+	949.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2308.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.53392184022071	5.01277062662215	4.73991216890171	4.63111580339457	4.84736320518563	4.91247187366519	4.59956596268493	4.69832299205673	0.0688147819613593	0.844448637583608	0.941009934631134
Merged-chr12-84767668-4	chr12	84767571	84767771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 1 of 3)	intron (NM_023409, intron 1 of 3)	5441.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	7.58175070885294	7.39722981423408	7.23693207764487	7.29979386944942	7.20735541153059	7.39177777164287	7.27572822768064	7.32774546088839	-0.111259044933534	0.54406192358287	0.795027379566929
Merged-chr12-85380523-4	chr12	85380393	85380593	+	945.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-5776.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	4.66726107482828	4.8847990574926	4.66801464884213	4.78158316678182	4.44396876834627	4.48998632319199	4.52405971352204	5.03553326001809	-0.244575472180152	0.50585895106061	0.771678831494709
Merged-chr14-34747193-4	chr14	34747097	34747297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001301330, exon 19 of 19)	3' UTR (NM_001301330, exon 19 of 19)	-72939.0	NM_008166	14803.0	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	5.83354554309937	5.90171133324506	6.07979334599523	6.40028783845258	5.83704747775102	5.9097862658511	6.10768297858102	5.83043216285073	-0.268412853755138	0.314529928563049	0.626465142785405
Merged-chr2-51094881-4	chr2	51094782	51094982	+	921.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	54229.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	4.63116652902392	4.43757398086398	4.75922641007002	5.17676972405813	5.04791867153055	5.28229255994772	5.30804690034234	4.79589672114808	0.619279421459709	0.102806580963444	0.35216269069915
Merged-chr15-75981949-4	chr15	75981848	75982048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163518, exon 1 of 1)	exon (NM_001163518, exon 1 of 1)	337.0	NM_001163518	223648.0	Mm.17610	NM_146059	ENSMUSG00000098176	Ccdc166	2410075B13Rik	coiled-coil domain containing 166	protein-coding	7.03704145440187	7.00154402805424	7.41592132624892	7.42049151973742	6.84506799927288	6.84960779950008	7.16284533044097	6.6162301499785	-0.492457861726274	0.0265649066200221	0.154657954563308
Merged-chr5-92279351-4	chr5	92279257	92279457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1176.0	NM_025972	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	6.36906267453281	6.44535906634541	6.34984156522577	6.72111418473098	7.35332279051209	7.2209736440202	7.37459721524603	7.33363438371739	1.13942802995414	4.0936398660051e-08	1.9195071938233e-06
Merged-chr6-122822049-2	chr6	122821949	122822149	+	856.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021899, intron 1 of 10)	intron (NM_021899, intron 1 of 10)	1865.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	3.39759367780239	3.0623541131893	3.34097458899188	3.21084349206726	3.73598869182187	3.39463667761351	3.38477165571511	3.5030859923565	0.924606802379888	0.0792223467203338	0.304578557697237
Merged-chr13-55714688-4	chr13	55714568	55714768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175150)	promoter-TSS (NM_175150)	18.0	NM_175150	69672.0	Mm.294457	NM_175150	ENSMUSG00000021497	Txndc15	2310047H23Rik|AI854086|C5orf14|UNQ335	thioredoxin domain containing 15	protein-coding	6.07230736782564	6.53593046005324	5.55296230749541	5.78027479572103	6.16569601397713	5.76313482280932	6.04220384297374	5.84751216088869	-0.105853302521562	0.729175493345625	0.892476699180608
Merged-chr11-61950812-2	chr11	61950712	61950912	+	821.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5951.0	NM_001281818	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	3.2641989432475	3.68383469719213	3.00424464595758	3.13792532565049	3.12740943675974	3.59946792283472	3.19255724190661	3.20248655948335	-0.024357195300546	0.967502138769106	0.988536511573071
Merged-chr13-113553775-4	chr13	113553677	113553877	+	863.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2-int|LTR|ERVL-MaLR	-50933.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	4.19480400677061	3.94237900330035	4.02132548224788	4.05665330036216	4.03422677863048	3.69843425528271	4.00399357420194	3.87081251844803	-0.380601808924146	0.382801521092738	0.684763626695987
Merged-chr19-53332169-4	chr19	53332071	53332271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008543, intron 2 of 5)	intron (NM_001008543, intron 2 of 5)	1763.0	NM_001008543	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	7.79047411659619	7.51411562183541	8.47735878020659	8.05743983841695	7.51940656905098	7.73882426859291	7.94827842728717	7.76284939137372	-0.338471082053577	0.145637301665354	0.425323718121529
Merged-chr2-127270712-4	chr2	127270628	127270828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_139308, exon 1 of 8)	exon (NM_139308, exon 1 of 8)	499.0	NM_139308	99138.0	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	6.95344627689358	7.50362339873286	6.95466040858234	7.10320321251429	7.41790228375524	7.26155661816547	7.5054003055154	7.30374043355383	0.303891785128884	0.142361660205515	0.419897244509492
Merged-chr2-90841355-2	chr2	90841298	90841498	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-5757.0	NM_001317241	56428.0	Mm.28023	NM_019758	ENSMUSG00000027282	Mtch2	2310034D24Rik|4930539J07Rik|HSPC032	mitochondrial carrier 2	protein-coding	3.24994075712142	3.26187344624048	3.19365731195954	2.58449829303867	2.96721684034736	3.30957508634131	2.85857145217625	3.40491290822935	0.185797446868034	0.782876633979577	0.915390159014904
Merged-chr12-72490219-4	chr12	72490115	72490315	+	887.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030070, intron 23 of 24)	RLTR19|LTR|ERVK	-46142.0	NM_026327	67708.0	Mm.11233	NM_026327	ENSMUSG00000034501	Pcnx4	1810048J11Rik|4932413O10|AU017192|Pcnxl4	pecanex homolog 4	protein-coding	4.5656059386086	4.29638963676956	4.7770419071767	4.68302152389437	4.36509572611263	4.12481792227053	4.61834316626723	4.11000522081045	-0.620272455950202	0.124689326654709	0.392057414935683
Merged-chr18-80938238-4	chr18	80938137	80938337	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A2B_MM|LTR|ERVK	-4179.0	NM_015805	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	4.36921639475694	4.64638198134268	4.36986570549828	4.46243287254066	5.29501044958885	5.21697391282238	5.47581975948067	5.4776877325927	1.76325369173091	6.8591343583836e-08	3.04570383340852e-06
Merged-chr2-168579266-4	chr2	168579163	168579363	+	990.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	11102.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	5.80420504326345	5.5517266664316	5.56099270365777	5.80557302408276	5.86491433322975	5.43689806084844	5.42116857489229	5.14815147324906	-0.30516092787847	0.311947319696181	0.623813898793094
Merged-chr8-120618278-4	chr8	120618134	120618334	+	985.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308449, intron 2 of 3)	intron (NM_001308449, intron 2 of 3)	16148.0	NM_197988	68918.0	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	4.61078022952905	5.01405901325327	4.56637691316625	4.86695977688158	5.04290983040539	4.74587924100234	5.03243252120532	5.2287804289289	0.471454832750908	0.169680670365459	0.462357416581541
Merged-chr6-125302313-1	chr6	125302213	125302413	+	589.0	f0_balb.idr	Intergenic	Intergenic	11572.0	NM_010736	17000.0	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	3.51011034603777	3.33021282443303	3.09220632133001	3.46100157803457	3.24046386474605	3.46095969988611	3.54538821116624	3.45651847735523	0.215049943560649	0.687949039690675	0.87257074872168
Merged-chr5-30666723-4	chr5	30666628	30666828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302130)	promoter-TSS (NM_001302130)	-158.0	NM_007681	12615.0	Mm.290563	NM_007681	ENSMUSG00000029177	Cenpa	Cenp-A	centromere protein A	protein-coding	8.21887455013275	8.08738614158412	8.20856231434183	8.43298448758203	7.93234029674909	8.21702629761202	7.96071617128245	8.0475167904635	-0.269035874593272	0.113462306579351	0.372473895607002
Merged-chr7-110386503-4	chr7	110386407	110386607	+	905.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	164804.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	4.27713864757864	4.09917897040433	4.39786684376798	4.32593487103476	4.23595272873576	3.95151648080474	3.8734066065606	4.18830833589451	-0.509216330647523	0.223968885446501	0.53210045864795
Merged-chr15-101988400-3	chr15	101988292	101988492	+	914.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	15950.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	3.2927653331849	3.21247589803835	2.75070989245189	2.50836860853894	3.46107602361727	3.29291257994151	3.1638994496936	3.58905492941207	1.49939722325615	0.0335543734640712	0.180376424418876
Merged-chr7-113523144-4	chr7	113523060	113523260	+	898.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360668, intron 1 of 12)	intron (NM_001360668, intron 1 of 12)	9326.0	NM_001360669	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	4.24656540668996	4.27871302433726	4.72440774931317	4.39038164942932	4.56874378211951	4.42256408720753	4.22905069989002	4.42415580720042	0.00737525227474364	0.984871908078601	0.994470259676655
Merged-chr17-31021044-4	chr17	31020934	31021134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36660.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	6.26259937859461	6.38640127200311	6.49599407468234	6.60920933748517	5.75879075089316	5.85062878077417	5.82881999608255	5.75006264073711	-1.02664595153822	1.5008741355429e-05	0.000395815932174168
Merged-chr17-56266525-4	chr17	56266435	56266635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9742.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	7.07068347134818	7.51646702932857	6.96839587583482	7.13442630599549	7.32757631638061	7.47534147899607	7.27244786395744	7.24057514946081	0.187408466159603	0.354947753604069	0.661579026385505
Merged-chr2-173227723-3	chr2	173227623	173227823	+	785.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_022995, exon 4 of 4)	3' UTR (NM_022995, exon 4 of 4)	-8801.0	NM_001139519	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	3.27833539273834	3.27349209926201	3.2787381388467	3.13204021492757	3.62254215964932	3.32871532970067	3.53740035319091	3.55059619815017	1.00409106127583	0.0483305227397699	0.226929446398382
Merged-chr3-129949589-4	chr3	129949485	129949685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025779, intron 1 of 7)	MLT1A|LTR|ERVL-MaLR	20621.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	6.35485360158096	6.28878094317437	6.35597898904217	6.9223677560071	6.04927721078575	6.27376830719097	6.52273572357688	6.25759095376341	-0.36612495683894	0.164646893638379	0.454857412857991
Merged-chr6-129233038-4	chr6	129232959	129233159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040268, intron 3 of 3)	intron (NR_040268, intron 3 of 3)	4986.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	8.71901531262694	8.79356168565977	8.68179581353297	8.69789744368346	8.62772439882406	8.79715353964196	8.6247400055859	8.48362977817257	-0.108444796298461	0.465949202915462	0.74626088086293
Merged-chr12-33170306-4	chr12	33170196	33170396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	L1MB7|LINE|L1	22610.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	5.76179210546974	5.699383027712	5.70832044821813	6.13208397295725	6.38919574982839	6.22440907697666	6.11929550696844	6.5175960000673	0.712863826971253	0.00630112191173561	0.0562180441909537
Merged-chr2-120663911-4	chr2	120663798	120663998	+	931.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54303.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	5.08079281541894	4.70264446931268	5.22264349325244	5.22232859346831	4.76842030556489	4.60250894709848	4.54665257074363	4.88154445215408	-0.758763674275179	0.0307084491230885	0.169928997911243
Merged-chr15-68168000-4	chr15	68167903	68168103	+	985.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152182, intron 8 of 13)	intron (NR_152182, intron 8 of 13)	90853.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	5.2735426842869	4.97375866539116	5.5427694537897	5.82583883201942	4.69363811018652	4.99323117772917	5.15576014307079	5.11185867900735	-0.860796090689544	0.0147490948729693	0.103584195753634
Merged-chr5-3358953-4	chr5	3358857	3359057	+	996.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	15064.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	5.20017628833935	5.28308782417611	5.49210548734531	4.99856996934914	5.49730493307584	5.52818716743481	5.23885072680009	5.19749448849132	0.251306635226483	0.409776274513555	0.70525942551561
Merged-chr2-145370542-3	chr2	145370436	145370636	+	914.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053195, intron 2 of 16)	intron (NM_053195, intron 2 of 16)	127925.0	NM_053195	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	3.49476781203535	3.50815051764665	3.43918512455606	3.75941377809183	3.48042679071649	3.22628083326912	3.5856407689539	3.59838558141077	-0.283431649812638	0.584830043859198	0.817799255271971
Merged-chr4-11579253-4	chr4	11579150	11579350	+	970.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256142)	promoter-TSS (NM_001256142)	-412.0	NM_001256142	100503583.0	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	5.10099942515752	4.89716343894229	4.90427557376383	5.14165219949922	4.72641876329359	4.6687192486541	4.88082371162974	5.00353988032722	-0.402621717313245	0.219743865002263	0.527382337133262
Merged-chr5-52168669-4	chr5	52168561	52168761	+	906.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042620, intron 5 of 11)	intron (NM_001042620, intron 5 of 11)	21885.0	NR_104311	13204.0	Mm.993	NM_007839	ENSMUSG00000029169	Dhx15	DBP1|DEAH9|Ddx15|HRH2|mDEAH9	DEAH (Asp-Glu-Ala-His) box polypeptide 15	protein-coding	4.28317614484857	4.5326137099864	4.52297525007289	4.30463599821956	3.86072050454098	4.3669563390769	4.22035608204343	3.87327389637262	-0.808912317979009	0.0570856924803086	0.250391800720383
Merged-chr5-137533641-4	chr5	137533559	137533759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010312)	promoter-TSS (NM_010312)	-353.0	NM_010312	14693.0	Mm.30141	NM_010312	ENSMUSG00000029713	Gnb2	Gnb-2	guanine nucleotide binding protein (G protein), beta 2	protein-coding	7.01750852141558	7.26545229244832	7.01873189420412	6.94933355701596	7.01647489360469	7.2911740638006	6.97084079415195	6.9629132672553	-0.00130661320531478	0.994755944591935	0.998113036482228
Merged-chr17-84647857-4	chr17	84647754	84647954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172256, intron 10 of 12)	intron (NM_172256, intron 10 of 12)	21355.0	NM_172256	213575.0	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	7.25368502892019	7.29663509872693	7.06744893247894	7.40042389386591	7.44020228931907	7.45350246274363	7.42796114805693	7.26070765285812	0.172586706563646	0.347421108682361	0.655506340921964
Merged-chr14-7991557-7	chr14	7991462	7991662	+	898.6904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007870, intron 1 of 7)	ID_B1|SINE|B4	2620.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	4.62574621801781	4.35284991469744	4.66638818244181	5.0956201102193	4.36970755305355	4.76006171602574	4.75619114515228	4.84574433356554	-0.0938447242580732	0.812994954599452	0.927731304883839
Merged-chr17-80734877-4	chr17	80734773	80734973	+	936.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6848.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	4.85068856509568	4.4355941939166	4.55419661361411	4.58225298339686	4.46080107606985	4.50536186468393	4.76039910466542	4.88081686519031	0.105526447320065	0.772581585907472	0.910940763350478
Merged-chr2-159587293-4	chr2	159587193	159587393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-360048.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	5.88550795218387	6.17103202538063	5.88655049165826	5.80426894071846	5.83277394473003	6.08490850606608	6.32745757833875	5.03614028102489	-0.0639621232466638	0.849082261033948	0.943014031395955
Merged-chr2-104740532-6	chr2	104740443	104740643	+	757.922241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144804, intron 1 of 8)	B3|SINE|B2	2258.0	NM_144804	211896.0	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding	3.53417005336008	3.72522129443908	3.6826739925215	3.55653926582322	3.3775473973647	3.28422932574575	3.29482268342883	3.47904305657055	-0.909708862549508	0.0758259907514795	0.297505227402376
Merged-chr1-23432762-2	chr1	23432662	23432862	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49587.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	2.98898618339292	2.82375683691438	2.98942841970895	2.54950379410873	2.65711189549822	2.64453022396766	2.80464793613279	2.74981411642815	-0.607344652719759	0.364396442811749	0.669265956462516
Merged-chr18-30584053-4	chr18	30583947	30584147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	311182.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	5.64038829888118	5.44912640194015	5.33703353775953	5.14551598992014	6.34297525462042	6.14826373694692	5.92195087454906	6.14436077353856	1.25885630475284	2.51330909059534e-06	8.05832557475162e-05
Merged-chr10-88383614-4	chr10	88383509	88383709	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 1 of 20)	RMER10A|LTR|ERVL	4197.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	4.99483159033219	5.03020405444643	4.99566402793059	4.83407885798771	5.07484598771552	4.98636935667787	5.24774947016929	5.0264131365815	0.259429987530679	0.400635811395857	0.698394798671281
Merged-chr8-61666113-2	chr8	61666013	61666213	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-74944.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	2.99337444842371	2.8402106613595	2.99376143661435	3.21928887315952	2.88075165304024	2.69439734946888	2.79967135926628	2.99219637985075	-0.790494923162624	0.214326670983832	0.52008175481397
Merged-chr5-72269709-4	chr5	72269590	72269790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 15 of 22)	intron (NR_003966, intron 15 of 22)	66347.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	6.91784432688738	6.8244282991191	7.02010849824365	6.84794637735147	6.96207857503028	6.85043042178896	6.88402916196221	7.20601339462963	0.117362355960774	0.552701513899856	0.799868677982226
Merged-chr18-44383170-4	chr18	44383049	44383249	+	973.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027490, intron 1 of 10)	intron (NM_027490, intron 1 of 10)	2649.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	4.80220176529501	4.59285790652232	4.80298902804448	4.99414017878488	4.70855226320108	4.60094781736338	4.8161141581088	5.0336731232465	-0.041929488824813	0.904109022992853	0.964516711899835
Merged-chr9-78493436-4	chr9	78493345	78493545	+	776.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11721.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	3.91975884337417	3.59065254856343	3.82980722368128	3.71074419425756	3.78718782572698	3.49988173234465	3.4990277660706	3.73005516961766	-0.367583941036587	0.446980456691561	0.732639937522419
Merged-chr6-124512570-2	chr6	124512470	124512670	+	667.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023143)	promoter-TSS (NM_023143)	-51.0	NM_023143	50909.0	Mm.333375	NM_023143	ENSMUSG00000055172	C1ra	AI132558|C1r|mC1rA	complement component 1, r subcomponent A	protein-coding	3.04061267114611	3.30763974092062	3.1591672584055	2.77559786852184	3.0120243145685	3.08785657954051	2.90213822506406	3.21256192142179	-0.0878760849111507	0.885720690817065	0.957093607986335
Merged-chr3-82793828-4	chr3	82793724	82793924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	7SK|RNA|RNA	82659.0	NM_001277170	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	6.82230003738513	6.54184119956	7.12240415472363	7.26999076174376	6.74672984111909	6.75370549715376	6.99498752720815	6.88704588100672	-0.185392586746502	0.42917100958009	0.720123800603074
Merged-chr19-6243037-1	chr19	6242937	6243137	+	584.0	f0_balb.idr	intron (NM_194348, intron 1 of 39)	intron (NM_194348, intron 1 of 39)	1369.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	3.42144466964341	3.40182324099871	3.42188950908992	3.34859634868928	3.52250956360538	3.41371671685824	3.40902063540787	3.97844566148889	0.678439731882239	0.186899533437639	0.485115483009069
Merged-chr8-83736171-4	chr8	83736096	83736296	+	845.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	RLTR11A2|LTR|ERVK	5115.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	3.91886071682081	4.28690462982405	4.07486737246667	3.90185517647611	4.58226850009541	4.34059645145028	4.10486289084316	3.86117499114461	0.528010372622482	0.237506694851147	0.547688114582233
Merged-chr1-59634161-1	chr1	59634061	59634261	+	764.5	f0_balb.idr	exon (NM_001357842, exon 18 of 19)	exon (NM_001357842, exon 18 of 19)	36673.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	3.21713262827878	3.05726664342726	3.37951000874682	3.48786757214505	3.18613149835719	3.14041119779413	3.08678130367663	3.15708725281627	-0.611714829059701	0.281051738497992	0.593153291080506
Merged-chr8-25043634-4	chr8	25043532	25043732	+	803.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_031257, exon 11 of 12)	exon (NM_031257, exon 11 of 12)	-4670.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	4.48850961217179	4.51701215135266	4.72575066346355	5.07373629383335	4.24618124874265	4.43282387770865	4.70310559826364	4.52890378466567	-0.571113518727929	0.147763069051861	0.429115768749179
Merged-chr11-117829080-4	chr11	117828955	117829155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027827, intron 2 of 10)	intron (NM_027827, intron 2 of 10)	-3041.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	7.43059206011784	7.3538423733437	7.75583028884686	7.21388281143247	7.34069507641587	7.23672779582032	7.35660545904502	7.04109618564995	-0.257478296457736	0.207975927074083	0.512108434400184
Merged-chr10-81550355-4	chr10	81550232	81550432	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5286.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	4.6221347172139	4.47857332719276	4.47360243832565	4.1212251294306	4.09492934355683	4.23604346389515	4.23959443795882	4.54744126223924	-0.329875331960764	0.42219206965766	0.714552247626084
Merged-chr10-128322456-4	chr10	128322378	128322578	+	996.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019953)	promoter-TSS (NM_019953)	19.0	NM_019953	56530.0	Mm.44220	NM_019953	ENSMUSG00000025381	Cnpy2	5330432A10Rik|AW229003|D10Bwg1546e|Tmem4|Zsig9	canopy FGF signaling regulator 2	protein-coding	5.29136790104968	5.17610096996171	5.23282223459192	4.86572853010639	5.28724661064564	5.06361675540809	5.04613245415416	5.42580193614645	0.160770961746359	0.611405144537377	0.832286272412929
Merged-chr13-108041615-4	chr13	108041498	108041698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2876.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	7.35042713817906	7.4172035341221	6.92185734265605	7.13617012967745	7.66493490872094	7.70722381636994	7.50190284498177	6.97259725387628	0.36946135230147	0.10507981292245	0.356518048107921
Merged-chr13-8641563-3	chr13	8641461	8641661	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 3 of 10)	intron (NR_110345, intron 3 of 10)	229483.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	3.86505956164335	3.96342803836251	4.10026865042585	4.5556922846605	3.44649835620261	3.98841781597701	3.56698422388231	3.63996650838849	-1.42507292490826	0.00550348359212222	0.0509935509767857
Merged-chr7-122010620-4	chr7	122010528	122010728	+	946.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028758, intron 3 of 16)	intron (NM_028758, intron 3 of 16)	10570.0	NM_028758	74105.0	Mm.29619	NM_028758	ENSMUSG00000030872	Gga2	1200007E24Rik|mKIAA1080	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding	4.71002066849816	4.60858924874525	4.14513533352827	3.63827393553118	5.31199175419544	5.58531184269966	5.40810818385816	5.3839055041873	2.2177392092986	8.79890961647065e-08	3.80496711780537e-06
Merged-chr13-94164498-3	chr13	94164423	94164623	+	807.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	106727.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	3.48112918678728	3.50547866354068	3.57705616459665	3.5467773057606	2.93951442752745	2.96687125513391	3.06754115500583	3.14163079824259	-2.05485844231315	0.000572457339423381	0.0086075643502291
Merged-chr15-101257067-4	chr15	101256988	101257188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9758.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	6.47418241580445	6.7355126634516	6.27999068897344	6.17326846377736	6.42649874779347	6.25007879536345	6.67981844039011	5.97361023997222	-0.0981875634761647	0.709550462925786	0.883620420956218
Merged-chr12-12299889-4	chr12	12299809	12300009	+	861.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	37770.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	3.82688183784753	3.58683991610311	3.47910694211549	3.99276480093701	3.77059244888087	4.1842253107128	3.86095378107731	3.9695954976381	0.558807098223386	0.253155147388565	0.564444625860502
Merged-chr11-118490935-4	chr11	118490806	118491006	+	848.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001285436, exon 14 of 14)	3' UTR (NM_001285436, exon 14 of 14)	14074.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	4.54884355630665	4.31187255557683	4.14848616522591	3.82902736669734	4.17281452580746	4.175877562539	3.92901959876452	4.28000732330371	-0.194773967418007	0.662573558644331	0.860115279097678
Merged-chr1-186261499-1	chr1	186261399	186261599	+	590.0	f0_balb.idr	Intergenic	Intergenic	-144189.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	2.79887920240384	2.85859471024451	2.97797072564786	3.6099501793793	2.31599729887547	2.45746790232408	2.43092288176248	2.59176609174186	-4.58861627383947	3.26730697437163e-05	0.000781463854599457
Merged-chr8-126920568-4	chr8	126920499	126920699	+	938.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25322.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	4.564681699378	4.33298286481461	4.78174868330461	4.47464735465302	4.56447583010417	4.16521906444273	4.46374951834374	4.71053536625234	-0.102499218611374	0.790349906780658	0.918829338045187
Merged-chr11-77784459-3	chr11	77784367	77784567	+	920.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	7232.0	NM_001291212	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	3.81964420239576	3.5375249318464	3.72323154097307	3.76886206945622	3.59275443961425	3.55672660890574	3.6040959848725	3.8633918241672	-0.183844627050719	0.698758780324254	0.878505428649175
Merged-chr7-142284118-2	chr7	142284039	142284239	+	840.166626	f0_balb.idr|f1_balb.idr	Intergenic	ERVB4_1-I_MM-int|LTR|ERVK	-9776.0	NM_001199309	100043627.0	Mm.388589	NM_001199309	ENSMUSG00000056885	Gm4559	-	predicted gene 4559	protein-coding	3.73915998958186	3.68412755994352	3.92860938321846	3.57357217656434	3.63535642997926	3.69420305061481	3.82097403153788	3.57524191204595	-0.134144011357321	0.776326298620121	0.912883229985628
Merged-chr7-128226531-4	chr7	128226405	128226605	+	977.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10852.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	4.81862466783787	5.00054428954472	4.99173750426062	3.55282871650067	5.26972062156725	5.06617398310516	4.75865188917319	4.57402342798951	0.440540941065706	0.37686883161301	0.679494401442451
Merged-chr6-125313920-4	chr6	125313811	125314011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010736)	promoter-TSS (NM_010736)	-26.0	NM_010736	17000.0	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	7.88213085441179	7.70674228954644	7.55518302048252	7.65269032417709	7.92381036997765	7.89110205233901	8.05677587184165	7.94143232464707	0.328779993577259	0.0489229331649035	0.228676481464714
Merged-chr6-137397544-3	chr6	137397422	137397622	+	741.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 10 of 26)	intron (NM_011216, intron 10 of 26)	-13199.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	3.17702888166797	3.27054955803772	3.40356604026176	3.30979866603358	3.10342616771155	3.01459788132266	3.7427272492801	2.90374620095582	-0.199654660173337	0.750511678579315	0.901823997485197
Merged-chr18-35771444-4	chr18	35771343	35771543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019912)	promoter-TSS (NM_019912)	-116.0	NM_019912	56550.0	Mm.180052	NM_019912	ENSMUSG00000091896	Ube2d2a	1500034D03Rik|Ubc2e|Ube2d2|ubc4	ubiquitin-conjugating enzyme E2D 2A	protein-coding	7.45700334657012	7.52593062620897	7.27510429385181	7.09044917050724	7.56742003775182	7.62583124906139	7.50353114164758	7.4904079098426	0.280528422051901	0.136695034769989	0.411180117630179
Merged-chr4-141137990-4	chr4	141137894	141138094	+	950.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277195, intron 1 of 3)	intron (NM_001277195, intron 1 of 3)	1802.0	NR_102344	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	5.56846958012753	5.69704578738248	5.02153317710101	4.55636117980505	5.17782980989176	5.71738643641873	5.26767669208614	5.4077603094822	0.217342530505153	0.573380202670343	0.811880637183087
Merged-chr6-18848550-4	chr6	18848430	18848630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133939)	promoter-TSS (NM_133939)	-105.0	NM_133939	76522.0	Mm.275158	NM_133939	ENSMUSG00000044155	Lsm8	2010003I05Rik|AW214405|Naa38	LSM8 homolog, U6 small nuclear RNA associated	protein-coding	8.49509103985466	8.66593173971073	8.73332729503785	8.75722365090156	8.88625313433595	8.93231605115419	9.0698927432063	8.55573134888624	0.256254743670474	0.128871975688885	0.399380073270456
Merged-chr14-31955153-4	chr14	31955032	31955232	+	813.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73971.0	NM_030166	78754.0	Mm.40681	NM_030166	ENSMUSG00000021903	Galnt15	4631401E18Rik|Galntl2|mpp-GalNAc-T15	polypeptide N-acetylgalactosaminyltransferase 15	protein-coding	4.10342145472848	4.08142473514951	3.49945013879748	3.83033546738062	3.90297580630673	4.03740476493768	4.248360062096	4.01044219515292	0.417487667439286	0.366815534301775	0.671196990130232
Merged-chr9-73044875-4	chr9	73044771	73044971	+	948.979126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023635)	promoter-TSS (NM_023635)	61.0	NM_001301230	11891.0	Mm.34867	NM_023635	ENSMUSG00000032202	Rab27a	2210402C08Rik|2410003M20Rik|4933437C11Rik|ash	RAB27A, member RAS oncogene family	protein-coding	4.11569860874664	4.41980122528309	4.55319108603832	4.72279866391098	4.40568423745139	4.07420061630623	4.41671531716317	4.16482326480428	-0.483881459560264	0.242705128815445	0.553542515426786
Merged-chr1-177796111-4	chr1	177796004	177796204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007422, intron 1 of 12)	CpG	405.0	NM_007422	11566.0	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	5.75997537450337	5.98209799268454	6.31604980610609	5.25212227566544	6.24389573513107	6.27349228688791	5.94363654254716	5.67712155058639	0.295683302014313	0.361999600311567	0.667306442775501
Merged-chr10-91180324-6	chr10	91180313	91180513	+	834.3555299999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8794.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	2.92317842670266	2.88817466673374	2.98678137396869	2.70573098668483	3.14603766429375	3.09694338910522	3.03553938864661	3.15812824909686	1.03960459122221	0.0735351430820883	0.292117309378277
Merged-chr16-93613830-3	chr16	93613728	93613928	+	915.305542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5991.0	NM_007620	12408.0	Mm.26940	NM_007620	ENSMUSG00000051483	Cbr1	AW261796|CR|Cbr	carbonyl reductase 1	protein-coding	2.71947032779628	2.65065784495097	2.71972282967104	2.34754130572853	3.88178992524908	3.16053512753047	3.81266367530216	3.94465919460604	5.91623953635976	2.87570379205975e-12	2.85083175786937e-10
Merged-chr17-24654157-4	chr17	24654036	24654236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3831.0	NM_023055	65962.0	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	5.29387789144911	5.33425975651427	5.26348470817058	5.11009200997662	5.54674058713122	5.66539486493627	5.23774575754733	5.4910423570242	0.453450527922634	0.112962955125709	0.371444336514893
Merged-chr1-131761597-4	chr1	131761486	131761686	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177243, intron 12 of 20)	intron (NM_177243, intron 12 of 20)	17564.0	NM_177243	320718.0	Mm.482704	NM_177243	ENSMUSG00000042268	Slc26a9	E030002L01Rik	solute carrier family 26, member 9	protein-coding	4.91738066647549	5.51638592266694	5.56954696014949	4.90105831083107	4.31291158456681	4.42882626835652	4.57637787427776	4.76446303238494	-1.49829943013988	0.000119147361435914	0.00234535122777847
Merged-chr3-22126568-4	chr3	22126455	22126655	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	49903.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.21873913533903	4.05225217195398	4.73207505947163	4.78994766931068	4.43018713050266	3.88493006356523	4.38014839646432	4.43888919277571	-0.439599580026109	0.335728015229448	0.645934307404376
Merged-chr9-103365906-4	chr9	103365778	103365978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134427)	promoter-TSS (NM_001134427)	-98.0	NM_175565	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	9.07687365051629	9.36027709791813	9.14511102898882	9.05312137063268	9.25807462407071	9.50489928564335	9.36767920022002	9.24251254181002	0.224841089409409	0.139496482098807	0.415292153553516
Merged-chr2-104105436-3	chr2	104105342	104105542	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007652, intron 2 of 3)	intron (NM_007652, intron 2 of 3)	9641.0	NM_001111060	12509.0	Mm.247265	NM_007652	ENSMUSG00000032679	Cd59a	AA987121|Cd59|protectin	CD59a antigen	protein-coding	3.83206559905501	4.05234626258149	3.97124312771176	3.7483200958479	3.70301313960129	3.61659598782933	3.60723526954781	3.6188759351099	-0.784748733767555	0.0946067612000129	0.336545254997827
Merged-chr6-17688931-4	chr6	17688802	17689002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5092.0	NM_001289626	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	6.9556895876072	6.64264456717072	7.00693735463929	6.87597727131746	7.23787408278453	7.1333328621674	6.77345152711193	6.85936682460787	0.204951966664104	0.338097239485449	0.647793189693986
Merged-chr2-102451892-7	chr2	102451824	102452024	+	880.56427	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010218)	promoter-TSS (NM_010218)	-132.0	NM_010218	14221.0	Mm.29730	NM_010218	ENSMUSG00000075012	Fjx1	-	four jointed box 1	protein-coding	3.00849481211704	3.13838728824327	3.13898696450222	2.88784317443664	3.16847281048273	3.31319950434463	3.40210347220356	3.46402093975203	1.15570575628506	0.0360013945023154	0.188505462651192
Merged-chr16-85056399-1	chr16	85056299	85056499	+	678.0	f0_balb.idr	exon (NM_001198824, exon 6 of 17)	exon (NM_001198824, exon 6 of 17)	84188.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	3.09829547858005	2.88747154844446	3.32165016866251	3.21167740545903	3.06623117537801	3.14565247904466	3.14637255437816	3.21326919142372	0.000296329162897592	0.999586223670097	0.999768819585389
Merged-chr7-127759945-4	chr7	127759859	127760059	+	872.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172748, intron 7 of 10)	intron (NM_172748, intron 7 of 10)	-9856.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	4.24560251692637	4.22523502976003	4.10301351225592	3.99527546167294	4.36989926410258	4.12247142800686	4.54217699986595	4.45134466725599	0.605236455540152	0.124813265125775	0.392172737029896
Merged-chr16-38088924-4	chr16	38088862	38089062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019827)	promoter-TSS (NM_019827)	-39.0	NM_001347232	56637.0	Mm.394930	NM_019827	ENSMUSG00000022812	Gsk3b	7330414F15Rik|8430431H08Rik|C86142|GSK-3|GSK-3beta|GSK3	glycogen synthase kinase 3 beta	protein-coding	9.07904359631776	9.1573008647853	9.23125360027495	9.01767848436211	9.29498937342617	9.4419703328254	9.43412971881117	9.15084881741297	0.264354609213259	0.0731283678839059	0.291053684724253
Merged-chr14-26640683-6	chr14	26640603	26640803	+	780.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	2569.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	3.43870513305621	3.03224971610479	3.43917969428006	3.23835623006534	3.2313378170516	3.81832905773274	3.58417154553575	3.69461312674285	1.01073557352661	0.0656325282998752	0.272781602934533
Merged-chr9-20459922-4	chr9	20459788	20459988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011753, intron 1 of 9)	CpG	272.0	NM_011753	22688.0	Mm.107441	NM_011753	ENSMUSG00000063108	Zfp26	5033428C05Rik|KRAB15|Zfp-26|Zfp70|Zfp81-rs1|mKIAA4196|mkr-3|mszf14|mszf52	zinc finger protein 26	protein-coding	5.11688994949387	5.45368355935623	5.72475014591565	5.44422272943819	5.11453460228187	5.45828895864269	5.25735307139149	5.1830778084841	-0.358810870937737	0.236574854961749	0.546577661329488
Merged-chr3-88138401-4	chr3	88138304	88138504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3968.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	6.7505021634709	7.05422933476454	6.73667767966647	6.87749770792113	7.15500343880083	7.17187431203179	6.87163940649948	6.91489565339842	0.241348068937455	0.234605586142556	0.544447848974703
Merged-chr13-113546588-2	chr13	113546488	113546688	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-43744.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	3.06958553217892	2.85912386116469	3.0699830498703	3.00666587837216	3.04835147481976	3.11941516674013	2.99993897100033	3.00908186550087	0.17454410207804	0.759948438490446	0.905851390428209
Merged-chr13-88459965-3	chr13	88459860	88460060	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-361512.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	5.89461493243667	5.77322664155889	5.41664072893461	5.52651362303001	6.19150217609548	6.00198720251263	5.88733772897831	5.62076841383792	0.474229946342252	0.0877756000757582	0.323210309479053
Merged-chr8-85502637-4	chr8	85502532	85502732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 2 of 11)	intron (NM_173866, intron 2 of 11)	10015.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	6.03270391208183	6.53171299599983	5.72742944079608	6.32133894428889	6.22845796965867	6.70827342867467	6.33827915457538	6.25746810269317	0.289205955140302	0.29083071990473	0.603119162906712
Merged-chr9-108809929-4	chr9	108809833	108810033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030729, intron 1 of 12)	intron (NM_030729, intron 1 of 12)	1553.0	NM_030729	80987.0	Mm.192416	NM_030729	ENSMUSG00000032598	Nckipsd	AF3P21|DIP1|ORF1|SPIN90|WASLBP|WISH|Wasbp	NCK interacting protein with SH3 domain	protein-coding	5.91577414808842	6.001260489008	5.36261391694655	5.95667801243078	5.99458804667793	5.8194736752615	5.99363973833514	6.13812340444384	0.235543166710962	0.382849321482113	0.684806264846199
Merged-chr2-154220130-4	chr2	154220023	154220223	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012392, intron 15 of 15)	intron (NM_001012392, intron 15 of 15)	-3619.0	NM_144890	228802.0	Mm.167411	NM_144890	ENSMUSG00000038572	Bpifb5	Lplunc5	BPI fold containing family B, member 5	protein-coding	5.44261383820639	5.04224661889795	4.9370229803189	4.96964897704995	4.91926755235498	4.95952297828054	5.11460844246387	5.0049363595838	-0.202682336275701	0.531138077459996	0.787095803840917
Merged-chr13-56183766-4	chr13	56183710	56183910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4925.0	NM_001168615	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	5.41654691883927	4.80725896750327	5.62234025513328	5.74418432748708	4.9563331959392	5.20973934015116	5.30452323381157	5.46805424816385	-0.378005335606117	0.281747051952437	0.593925998911027
Merged-chr13-12423345-3	chr13	12423258	12423458	+	655.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144835, intron 28 of 44)	RMER1B|Other|Other	27983.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	3.12466263625475	3.11495771333791	3.12506484577919	3.21902627789601	2.89523544324643	2.97677680830631	3.11343441934975	3.1799216697185	-0.444494131334476	0.438309672776743	0.726330030804391
Merged-chr1-64533622-4	chr1	64533528	64533728	+	929.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037726, intron 1 of 6)	CpG	824.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	4.53926524014538	4.72251875061605	4.53998860009737	4.32315298809468	4.70432022895539	4.67151699012607	4.34757326292177	4.40947059944967	0.045472012507751	0.903657351792333	0.964295858405566
Merged-chr4-149781212-4	chr4	149781092	149781292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6925.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	5.58585990653148	5.04103720029278	5.04409803927081	5.12509517054907	5.51440845614502	5.68352028647817	5.22576787866885	5.53289576219085	0.512414753724017	0.0958292560888467	0.339067983255357
Merged-chr10-80054699-4	chr10	80054601	80054801	+	989.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008162, exon 3 of 7)	exon (NM_008162, exon 3 of 7)	682.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	4.87184648838399	5.11728160570133	5.20584940225492	4.39427873582713	5.26360011864294	5.15667694999481	5.17971616325042	4.7910741830496	0.376362582243405	0.309669831334836	0.621833440934041
Merged-chr14-21986174-4	chr14	21986087	21986287	+	941.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145459, exon 3 of 3)	exon (NM_145459, exon 3 of 3)	3414.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	4.30363807935939	4.47079603251249	4.20477199551946	4.75861463065717	4.68929108950123	4.48005403680691	4.65393422467625	4.48023142696158	0.23957212743007	0.540928486056707	0.793009827469438
Merged-chr17-45556795-6	chr17	45556699	45556899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008690, intron 1 of 5)	intron (NM_008690, intron 1 of 5)	1099.0	NM_001304956	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	5.64633519027582	5.53743946280809	5.96260032453447	4.66732159930931	5.89402324235927	5.87240112869591	5.45602517301408	5.6934200189123	0.362558845151052	0.319660201268262	0.631524558708573
Merged-chr12-69682065-7	chr12	69681924	69682124	+	988.3253779999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135559)	promoter-TSS (NM_001135559)	-172.0	NM_001135559	20663.0	Mm.3770	NM_001135559	ENSMUSG00000034801	Sos2	SOS-2|mSOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding	3.84294321900516	3.87474879287971	3.73333445066038	3.73375167005692	4.29328094064707	3.85311986150561	4.02132250823557	4.12417601665218	0.820677339442024	0.0579876559096423	0.252864262696344
Merged-chr13-92576899-4	chr13	92576756	92576956	+	826.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030237)	promoter-TSS (NM_030237)	-624.0	NM_030237	79401.0	Mm.23520	NM_030237	ENSMUSG00000046957	Spz1	1700027M20Rik|AI429130	spermatogenic leucine zipper 1	protein-coding	3.66721945084507	3.96926712984239	3.54522257786417	3.47430492730231	3.77445754105233	3.95556014515368	4.04965097402195	4.30018437701645	1.0152846794074	0.0332655928574971	0.179203181261166
Merged-chr10-43478077-4	chr10	43477976	43478176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1064.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	5.21892082999873	5.65321731219694	5.60310720346491	5.5633059937378	5.45891034359745	4.86654799726328	5.86626152410729	5.69692378660264	0.00387709238670621	0.990690706227069	0.996373953040518
Merged-chr13-117052972-4	chr13	117052862	117053062	+	916.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-27446.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	5.07143651012386	4.81227407989976	4.5657677476854	5.14534692104447	4.9554171546331	4.55704135901803	4.71006473641864	4.60648699493668	-0.415461955204659	0.255578089509978	0.567164234863
Merged-chr3-136688168-4	chr3	136688071	136688271	+	854.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	18105.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	4.4948122792437	3.92290250145547	4.08329547185888	4.18981387869485	4.00965164252456	4.20820227345635	4.28634149529899	3.97979875737468	-0.161686298379123	0.705313607180571	0.881662591339926
Merged-chr8-72295220-4	chr8	72295123	72295323	+	987.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-23839.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	4.52611945744696	4.89164659059754	4.93393897442052	4.56427741002797	4.98902704105619	4.96186278127689	5.13162130385248	5.23852664851788	0.703174332902082	0.0344266989026412	0.183486185038645
Merged-chr6-125231761-4	chr6	125231657	125231857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001286753)	TTS (NM_001286753)	103.0	NM_145391	213233.0	Mm.296902	NM_145391	ENSMUSG00000038213	Tapbpl	BC017613|TAPBPL-R|Tapbplr	TAP binding protein-like	protein-coding	6.10403896961038	6.54480894027808	5.37300094631451	5.78564354044333	6.6114001288754	6.30179781086562	6.24632774759453	5.89968095810207	0.414577030780653	0.2034974197735	0.506335611635543
Merged-chr4-124663224-4	chr4	124663148	124663348	+	854.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5602.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	3.29550428848467	3.41228749763853	3.53898936299661	3.47210709421803	3.75569172644997	3.65558054240877	3.86017136278466	3.59132870162078	0.905408744736272	0.060997467638314	0.260988972142721
Merged-chr19-21274326-4	chr19	21274197	21274397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009551, intron 1 of 5)	intron (NM_009551, intron 1 of 5)	2019.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	7.2760959644229	7.31021914094606	7.44975222234904	7.62552041750451	7.32512100015494	7.25539484073452	7.7924767102237	7.23924282502732	-0.00908200407990043	0.965463624785972	0.987772734750557
Merged-chr3-8993665-6	chr3	8993561	8993761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	10543.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	6.09755898160845	5.94539391337856	5.67026687274764	5.81551908568152	5.44318455659651	5.89906110467498	5.66801021333616	6.13185049509126	-0.141754346861253	0.617042274118791	0.835291303503194
Merged-chr3-132116320-4	chr3	132116204	132116404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	31012.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	5.6794519675137	4.81236459842288	5.91227954663703	6.09936319766449	5.52623658796873	5.90525225725417	5.77195404154537	5.65072348883541	-0.00268101244289943	0.99402962332264	0.997739983081298
Merged-chr14-75010563-3	chr14	75010452	75010652	+	900.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 3 of 3)	intron (NR_030568, intron 3 of 3)	-5475.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	4.11880687024418	4.24069295962694	4.61470980390663	4.47328139848748	4.13724100231517	4.13923777418523	3.99863251714899	4.54151119055992	-0.390424188406449	0.354394411674245	0.661094606846962
Merged-chr4-145195028-4	chr4	145194948	145195148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276465)	promoter-TSS (NM_001276465)	-43.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	6.33889407503447	6.61768907839736	6.19657277547802	6.41667756060757	6.89922167631696	6.82428478470617	6.95589216905996	6.62815857437491	0.615778012293392	0.00448353808040316	0.0438370545364033
Merged-chr16-52056343-4	chr16	52056243	52056443	+	916.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	24794.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	4.5189528686736	4.32786851894903	4.8081222022995	4.51051627319777	4.71941899194211	4.37808568168412	4.32740741700135	4.38919327729492	-0.161534262692912	0.675065679538285	0.866517345800829
Merged-chr8-115539766-4	chr8	115539679	115539879	+	923.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	167115.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	4.50975117280269	4.48997006214692	4.38340512483804	4.54154367062184	4.51190375305483	4.46612278777567	4.52909208775788	4.42437368249364	-0.00713397205746322	0.984096029642728	0.994237242628259
Merged-chr11-99150113-3	chr11	99150016	99150216	+	721.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007719, intron 1 of 2)	intron (NM_007719, intron 1 of 2)	4961.0	NM_001301713	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	3.48694863833938	3.73567365011688	3.37155650104011	3.40004135164424	3.75280962696301	3.65797454381807	3.35961075251014	3.24317732747558	0.073102415823143	0.890997178822537	0.959254414522706
Merged-chr14-40924940-3	chr14	40924841	40925041	+	889.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	MER58A|DNA|hAT-Charlie	23268.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	3.51451560233322	3.28825074712039	3.2449011904898	3.47973035245326	3.32637641497138	3.29355791170769	3.23357084995577	3.24331684182684	-0.417767738438085	0.43049157919567	0.721108120456474
Merged-chr2-164938911-4	chr2	164938817	164939017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9302.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	5.24918772627823	5.37224649121786	5.25008686902547	4.8348269442139	5.18715883933665	5.1937721209203	5.339327640648	5.24645029439743	0.126430190682355	0.687420088378246	0.872252468458984
Merged-chr18-53770313-4	chr18	53770227	53770427	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25780.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	6.09330651446771	5.66854771768847	5.88356852244493	6.24180280664393	5.59879235693187	5.3502903542033	6.08221099436239	6.05062183642263	-0.311202030163121	0.301421020740947	0.613453913648291
Merged-chr2-91956114-4	chr2	91956016	91956216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138306, intron 1 of 30)	intron (NM_138306, intron 1 of 30)	-5768.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	5.18803823237768	5.04425916217598	5.43228762094894	5.71416368059798	5.11656911522781	5.49077625534434	5.3488482418489	5.45582596925433	-0.0659056949871827	0.838304992683672	0.938633191613918
Merged-chr11-74649351-4	chr11	74649254	74649454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081158)	promoter-TSS (NM_001081158)	-141.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	8.00961646058372	8.17692174662261	7.91313274804999	7.83137254353735	7.96144941276061	8.1814824875156	7.93866009267202	8.09628519860411	0.0777211643572123	0.648909618788145	0.852475708788533
Merged-chr15-78178560-4	chr15	78178469	78178669	+	783.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4461.0	NM_025931	67042.0	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	3.68727249885863	3.76571969179228	3.32144858464225	3.43513733700287	4.03862293444416	3.80709080730381	3.91237456315011	3.68570108200552	0.941922258043328	0.0513515635250582	0.235285029942074
Merged-chr2-45276913-4	chr2	45276826	45277026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-159484.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.32529912692953	7.41553093968151	7.30645930278683	7.33512104169071	7.08147665911955	7.1223904084687	6.65707886570591	7.09240175168393	-0.467798606095381	0.0167739591036876	0.113515272394122
Merged-chr7-43604692-4	chr7	43604570	43604770	+	929.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-2499.0	NM_001355131	74400.0	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	4.38702534670809	3.66527473338808	3.96059078343299	4.00953410784303	4.17920815788026	4.03128545254692	4.13045023795248	3.90660593050747	0.113582239604304	0.802019452653702	0.923662205653877
Merged-chr16-92698778-4	chr16	92698674	92698874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	CpG	-1445.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	5.9647818721871	5.83492861147111	5.62468341169377	5.58827032982676	6.05457116996592	5.77424089654354	6.13129176960822	5.87319522218033	0.356928489462462	0.167961706854606	0.459915036621355
Merged-chr13-49421634-1	chr13	49421534	49421734	+	611.0	f0_balb.idr	promoter-TSS (NM_001276399)	promoter-TSS (NM_001276399)	20.0	NM_001276399	75678.0	Mm.390586	NM_199056	ENSMUSG00000021385	Ippk	1810043M15Rik|InsP6	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	protein-coding	3.91356947345111	3.66702451823924	3.5145188181322	3.39762496737507	3.42392017117244	3.69003103228675	3.89592198975434	3.4529290053483	-0.00818495366410293	0.987375261815362	0.995271042049364
Merged-chr8-86884747-3	chr8	86884644	86884844	+	951.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	CpG	514.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	4.45095105041262	4.26513400236834	4.89040407574683	4.18865153267503	4.49406941672662	4.70937375152992	4.55489799158094	4.65015751708788	0.310478138239191	0.431096275423575	0.721473790608606
Merged-chr17-45433096-1	chr17	45432996	45433196	+	1000.0	f1_balb.idr	promoter-TSS (NR_130960)	promoter-TSS (NR_130960)	611.0	NM_152810	71702.0	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	4.15305702609657	3.89792770009969	3.86750490035822	3.49928993712653	4.16527226876119	3.93526512055832	4.2931178737216	3.96773340784811	0.655014679973528	0.158260487298391	0.445134872270402
Merged-chr11-44601122-3	chr11	44601018	44601218	+	974.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44B|DNA|TcMar-Tigger	14801.0	NR_126460	75389.0	Mm.261421	NR_126460	ENSMUSG00000086501	4930597A21Rik	-	RIKEN cDNA 4930597A21 gene	ncRNA	4.09518109454157	3.61439046775122	4.25984755024278	4.11946191325917	3.81502865400299	3.92220298933499	3.83981178871532	3.95467021543662	-0.447809837968499	0.329825943321173	0.641176589366592
Merged-chr12-42187249-3	chr12	42187138	42187338	+	902.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-701181.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	3.4054108614	3.18400951002152	3.4059106832659	3.51023602320768	2.85097838652436	3.05050624657944	3.0661135053912	3.0108189849833	-1.70607388507025	0.00476417314376901	0.0458503353434741
Merged-chr16-89871664-4	chr16	89871543	89871743	+	968.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 6 of 27)	intron (NM_009384, intron 6 of 27)	-53291.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	5.06493081235265	4.70746752164328	4.96038871278381	5.36285062439593	5.12222947405723	5.06197808119947	5.04115317089003	5.43804199468999	0.2066990701534	0.54481453679584	0.79552288170741
Merged-chr6-125071887-4	chr6	125071783	125071983	+	952.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163268, intron 1 of 1)	intron (NM_001163268, intron 1 of 1)	606.0	NM_001163268	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	4.96211925111677	4.676920606176	5.02887324231947	4.8973984432985	4.79418208534795	4.83614113399592	4.75900272559596	5.20437395592228	0.026149509837163	0.938007049620037	0.977460307804652
Merged-chr5-136519251-3	chr5	136519153	136519353	+	716.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291238, intron 1 of 22)	intron (NM_001291238, intron 1 of 22)	46728.0	NM_001291239	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	3.17676020121312	3.34715811089572	3.17710486337236	3.74868263543498	3.18552638909388	3.64646552206929	3.29353214551084	3.71771895485942	0.268407514028708	0.652842656764657	0.854764223296605
Merged-chr10-80596285-4	chr10	80596170	80596370	+	764.770813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5929.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	4.39241108107872	4.35161993308147	4.2599833737509	4.00837979822112	4.60918398649386	4.33971832605954	4.28680434390972	4.58494108365751	0.531035981207361	0.175729667546506	0.470571536296329
Merged-chr4-139252607-4	chr4	139252512	139252712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	58096.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	5.92947069729809	5.69364810617812	5.97617449950126	6.00234279363437	6.13124464324488	5.960824732566	6.29373504586329	6.41940843438881	0.467626069205201	0.0586946038560644	0.255000139003421
Merged-chr15-64047804-4	chr15	64047701	64047901	+	816.979126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	MTEa|LTR|ERVL-MaLR	11963.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.44695380919048	4.21803688366841	3.91893864544324	4.26180693626872	4.10076825344821	3.9261157830066	4.14810384388597	4.02133488959385	-0.44302751354103	0.294227336727471	0.606535224072776
Merged-chr4-66816679-4	chr4	66816517	66816717	+	908.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-10934.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	3.72260040615856	3.94432536688942	4.20051753073949	4.21130359372711	3.57768696556378	4.00785953224253	4.09939051954011	3.60074970165753	-0.56693320012151	0.245879316515674	0.557086363336334
Merged-chr7-143685874-4	chr7	143685773	143685973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024290)	promoter-TSS (NM_024290)	2.0	NM_001308111	79201.0	Mm.290780	NM_024290	ENSMUSG00000037613	Tnfrsf23	SOB|TNFRSFH23|Tnfrh1|Tnfrsf1al1|mDcTRAILR1|mSOB	tumor necrosis factor receptor superfamily, member 23	protein-coding	6.71248033974448	6.77569485542368	6.3125863182475	6.86277519772769	7.1042954132032	7.01748268982029	6.63401019349206	6.73839898168798	0.281602720864534	0.225333491552956	0.533690899252915
Merged-chr6-134247509-4	chr6	134247403	134247603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 5 of 8)	intron (NM_001303102, intron 5 of 8)	-148826.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	6.312903837336	6.35305647343063	6.27617121685962	5.92748658592121	6.33505283416257	6.43345412548008	6.68949999190674	6.57695941083039	0.447675945490947	0.0591824730427088	0.256315743760692
Merged-chr6-119360482-4	chr6	119360363	119360563	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355692, intron 4 of 7)	intron (NM_001355692, intron 4 of 7)	28271.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	5.44161604965186	5.39779631828738	4.99317439674642	5.31045023980365	5.45118711860878	5.28017621385576	5.27339173722243	5.3550131218769	0.085802776170063	0.769159627519828	0.909707439553917
Merged-chr4-135856569-4	chr4	135856483	135856683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080387, intron 1 of 5)	CpG	512.0	NM_010178	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	5.84360272836538	5.86823435882484	5.51107543800951	5.43785601596548	5.88102810708608	5.85102415901736	5.59502831428623	5.77099652504382	0.191787838579325	0.482743205655687	0.757421686487144
Merged-chr5-123684684-7	chr5	123684824	123685024	+	831.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291229)	promoter-TSS (NM_001291229)	-563.0	NM_001359222	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	3.75863472149785	3.89928945348073	3.95240748141755	3.11103370675463	3.8389629070221	3.65200502426134	3.57900212865257	4.07746096642975	0.236788431214294	0.669112286144342	0.863397557169305
Merged-chr17-84141087-4	chr17	84141068	84141268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46779.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	5.77579610873604	5.92613318419593	6.41284472719191	5.96501091388067	5.31163444103444	5.79878044457313	5.56526609385535	5.50228204184642	-0.809790710576842	0.00467816346977101	0.0452349061979961
Merged-chr5-115236028-4	chr5	115235935	115236135	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026398, intron 1 of 5)	intron (NM_026398, intron 1 of 5)	184.0	NM_026398	117109.0	Mm.24636	NM_026398	ENSMUSG00000060152	Pop5	1500019J17Rik|2700077E03Rik|AW049989|Rnasep3	processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)	protein-coding	4.8550645335556	5.18293075437315	5.03719212264655	4.74116022438075	5.0176027621096	5.33742371239246	5.17003929745065	4.96435728215912	0.33109468722791	0.308528245579355	0.620845739286685
Merged-chr1-183094954-4	chr1	183094850	183095050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001278218, intron 8 of 8)	intron (NM_001278218, intron 8 of 8)	52607.0	NM_001278220	68897.0	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	5.89596701581427	5.70177981348557	6.21876030331309	6.05114777428864	5.62406402216448	5.51256955011898	6.07621477087973	6.15998433779134	-0.178768407559481	0.532711325166535	0.788231326997748
Merged-chr10-115311455-4	chr10	115311339	115311539	+	951.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024454, intron 1 of 6)	intron (NM_024454, intron 1 of 6)	4152.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	4.56802222464584	4.12108413161206	4.61020561909002	4.96182215906635	4.37838730086326	4.86245966798968	5.05591680059684	4.68620761744263	0.317074966761187	0.451477793418602	0.736071851703571
Merged-chr1-132333800-4	chr1	132333689	132333889	+	810.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028778)	TTS (NM_028778)	17664.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	3.86716230438235	3.72356595097345	4.06352312253839	3.81889569969035	4.29817422045229	4.14085821141639	4.04552712963597	3.81167170282339	0.609608993495678	0.164833227152353	0.455072150356386
Merged-chr11-115172921-4	chr11	115172827	115173027	+	786.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	9586.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	3.73898478723348	4.17789879844399	3.68282859799124	3.65217681477435	3.8143631790613	4.15993835405122	3.92719804532424	3.73743874845704	0.246610052467103	0.603009111782492	0.827895617176754
Merged-chr18-88823989-4	chr18	88823895	88824095	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70212.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	5.07406064817577	5.25642306497468	5.6395849162924	5.49217201105356	5.28429757716789	5.25424869728832	5.51183061321042	5.74984432355956	0.128123858450721	0.678318252044232	0.868034533256964
Merged-chr18-53238574-4	chr18	53238462	53238662	+	997.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7100.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	5.83467191592261	5.47190015178946	6.00223727140089	6.21058482840868	5.24531310205212	5.2873212496753	5.56230325034568	5.53141231938294	-0.860116943351888	0.00422466876439568	0.0418579757768541
Merged-chr4-132571378-3	chr4	132571263	132571463	+	584.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	7296.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	3.31866442987154	3.15128394798726	3.20325618497983	3.37134496402093	3.25836259720901	3.18569776402673	3.13085199807845	3.56718152600559	0.0981309922801851	0.858433471660367	0.946576014812915
Merged-chr7-143095741-4	chr7	143095638	143095838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1096.0	NM_020277	56843.0	Mm.286668	NM_020277	ENSMUSG00000009246	Trpm5	9430099A16Rik|LTrpC-5|Ltrpc5|Mtr1	transient receptor potential cation channel, subfamily M, member 5	protein-coding	5.85904639885076	5.76275432262373	6.15460284970096	6.24960624013107	6.40574417796806	6.22605706988179	6.23825510419713	6.60299412103054	0.519930777517173	0.0400429245673822	0.2018995061119
Merged-chr2-27758544-4	chr2	27758472	27758672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 9 of 9)	intron (NM_001290481, intron 9 of 9)	47989.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	6.43292873117497	5.85818519018759	6.57787114494245	7.02765054410233	6.20845588997608	6.14823959769238	6.38406166318405	6.16706642890586	-0.482643305580363	0.100994511060837	0.348796133080997
Merged-chr11-59230477-4	chr11	59230362	59230562	+	902.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2195.0	NM_007476	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	4.51813728185399	4.44826243749243	4.48102109593946	4.13994663710331	4.19516573020515	4.53140367971838	4.00783253436156	4.07518781202029	-0.43439328563107	0.297156221307006	0.609283672084441
Merged-chr5-109796389-4	chr5	109796284	109796484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37758.0	NR_027964	667213.0	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213	zinc finger protein pseudogene	pseudo	5.59951621337314	5.47578795137226	5.57432042052022	5.83601588440813	5.30668332457733	5.31776696845743	5.28464585010115	5.95414013834728	-0.244536225350637	0.427483017584054	0.718603162473499
Merged-chr15-81103870-4	chr15	81103766	81103966	+	980.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	1181.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	5.03286291558856	4.61028531742155	5.18836676493951	5.37785499564618	4.93480933033829	4.78838356788487	4.8713886164079	4.9275973083854	-0.416792569540127	0.236585200659998	0.546577661329488
Merged-chr8-33930763-5	chr8	33930718	33930918	+	989.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286168)	promoter-TSS (NM_001286168)	-955.0	NM_001042675	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	4.80419538258947	5.02995517730282	4.80498812669793	4.21715060322136	5.15052739290793	5.2811836512703	4.78205108761362	4.87609830119331	0.611060259400792	0.109463201635843	0.365263113300955
Merged-chr8-72169402-4	chr8	72169283	72169483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023126, intron 2 of 7)	PB1D10|SINE|Alu	8183.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	7.00685763413649	7.62482519626499	7.11674719414038	6.91161662931985	7.08312136367241	6.82403371605499	7.21204920595136	6.76820360184582	-0.281508258565239	0.239218710499948	0.549670354848016
Merged-chr15-58019775-4	chr15	58019682	58019882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14512.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	7.28801748830047	7.00013228913722	7.19381131411905	7.08637190933216	7.33119608522032	7.16799113374822	7.13560255086167	6.93300175671788	0.0214668356802071	0.912577927163133	0.967260580411654
Merged-chr13-43269130-4	chr13	43269003	43269203	+	713.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033399, intron 1 of 1)	intron (NM_001033399, intron 1 of 1)	35069.0	NM_001033399	328232.0	Mm.441399	NM_001033399	ENSMUSG00000051335	Gfod1	9630032O13|AI850995	glucose-fructose oxidoreductase domain containing 1	protein-coding	3.88098308747347	3.76712392394742	4.24816224053085	3.8793333435105	3.67432724246926	3.48165895157347	3.66235406166929	3.55907160533604	-1.05854257873812	0.0298962928341131	0.166874861013122
Merged-chr5-124021914-4	chr5	124021823	124022023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	RSINE1|SINE|B4	10337.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	5.51263131842849	5.09077219118708	5.39766621643919	5.35860606458143	5.77846722297083	5.79378536984847	5.30907290647765	5.9872597684914	0.673562346534434	0.0223598032573714	0.137915809017022
Merged-chr1-166345775-4	chr1	166345659	166345859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33408.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	7.21233090319553	6.94003799827925	7.41498082155641	7.56424099894493	7.03927586155527	6.9202736675556	7.13310724471046	7.16405901486959	-0.334600707920773	0.116459681073263	0.377536510454894
Merged-chr3-97658209-4	chr3	97658107	97658307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182997)	promoter-TSS (NM_182997)	-5.0	NM_182997	108097.0	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	8.00537065852109	7.92234586893993	8.11656722689058	8.01975494569942	8.02915958547741	8.08579581972886	8.00165402450044	8.01478195453271	0.020538156091569	0.894479188548542	0.960584583257403
Merged-chr18-3510711-2	chr18	3510611	3510811	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026505, intron 1 of 2)	intron (NM_026505, intron 1 of 2)	2754.0	NM_026505	68010.0	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	2.96659260302028	2.81111720723594	2.77770986078041	2.72205663951225	2.91994159732815	3.01558839020371	3.01226177618042	2.90543119365681	0.657087339002584	0.268931696167505	0.580490538993026
Merged-chr9-85326716-6	chr9	85326646	85326846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001160378, exon 2 of 3)	exon (NM_001160378, exon 2 of 3)	378.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	5.94480159051131	6.37286788539059	6.20126098996356	5.92554653326147	6.30127027645484	6.27673643512183	6.16951149672446	6.03253135151497	0.132878789967095	0.588589261973661	0.819792652773191
Merged-chr12-83950663-4	chr12	83950569	83950769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023633)	promoter-TSS (NM_023633)	61.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	5.37110448790144	5.79862750622518	5.17635626170519	5.26749579053578	5.49015122422828	5.60580706677823	5.48718434429612	5.5639372215737	0.194355712844503	0.510194212783018	0.774557190395275
Merged-chr19-4059391-4	chr19	4059237	4059437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001362043, exon 1 of 6)	5' UTR (NM_001362043, exon 1 of 6)	110.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	5.42899759348793	5.48783020257369	5.5090904305703	4.69974038854814	5.54840342529587	5.15655557263746	5.09839973622749	5.34173650582889	-0.00308598629642363	0.993030141361125	0.997480504272198
Merged-chr11-74925869-4	chr11	74925781	74925981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013761)	promoter-TSS (NM_013761)	9.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	6.48126828034748	6.76575934748269	6.89151134073478	6.34570619739244	6.42901430797412	6.93573411626059	6.32280333380487	6.608806683064	-0.0584720901390794	0.814866761413555	0.928601866935455
Merged-chr6-96087167-3	chr6	96087069	96087269	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-25985.0	NM_182808	320265.0	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	5.0098284615614	4.96341682905526	5.60633745742851	5.55973496242779	4.04185896012098	4.0126916940669	4.18407185212491	4.41412397252759	-2.56805358268917	7.93248934798344e-10	5.18958326562604e-08
Merged-chr13-93778349-1	chr13	93778249	93778449	+	726.75	f0_balb.idr	intron (NM_009712, intron 1 of 7)	L1_Mus2|LINE|L1	6670.0	NM_009712	11881.0	Mm.300178	NM_009712	ENSMUSG00000042082	Arsb	1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1	arylsulfatase B	protein-coding	3.80165345180558	3.30072232314738	3.63001933371838	3.58998471330949	3.06414512564939	3.01760769542076	3.11739889953335	3.25518405108758	-1.81239574417173	0.00203799079001743	0.0237241949807369
Merged-chr8-34108507-4	chr8	34108394	34108594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293758)	promoter-TSS (NM_001293758)	218.0	NM_001293759	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	6.59817571807979	6.57142578845448	6.48315033208219	6.85157030497688	6.76400692864453	6.77536911796971	6.68627739565705	6.47855710148389	0.049441179579922	0.819887896153599	0.931044504081253
Merged-chr14-66848878-4	chr14	66848784	66848984	+	986.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	19716.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	4.90340635939922	5.26270964047574	4.82918487482477	4.75336305259785	5.04113689422113	4.96545808729552	5.11201534701957	5.00607718035317	0.173804587823272	0.596126622358082	0.824433280743724
Merged-chr2-152696951-4	chr2	152696851	152697051	+	971.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010376, intron 10 of 11)	intron (NM_010376, intron 10 of 11)	9803.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	4.73297248105563	4.81449550846378	4.60986364806998	4.2823418309982	5.16022172943982	5.05501642144228	4.95880629791431	4.84351568915199	0.840143248118331	0.0165168450641854	0.112347701998161
Merged-chr5-32728956-1	chr5	32728856	32729056	+	894.0	f0_balb.idr	Intergenic	Intergenic	17386.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	3.86789949807104	3.15213102717791	3.23897270103821	3.06362697926681	2.68778341348205	2.74435180450781	2.62541631147287	2.71233499476771	-3.34054766740044	4.93077073469734e-05	0.00111808642919727
Merged-chr13-37964245-3	chr13	37964148	37964348	+	802.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29960.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	3.14514448857515	3.30043868963629	3.2085409400131	3.23244549144147	2.98193438822092	3.44088294815352	3.36746409504206	3.57816517885334	0.471676953568037	0.401106670701987	0.698839078520995
Merged-chr7-81196828-4	chr7	81196717	81196917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16987.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	5.20783121097296	5.29005957225001	5.49881752942251	5.22004907936716	5.3764268586386	5.2484664853424	5.41855548460465	5.29926761940476	0.0710034630781799	0.803332665158812	0.924115094933912
Merged-chr4-138041743-4	chr4	138041638	138041838	+	987.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	43913.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	6.17835524537416	6.12841920410064	6.0871460970791	6.15054387805014	5.61409021574478	5.23831981164137	5.54554411016984	5.48049422813102	-1.06228605390898	3.97457926511756e-05	0.000927258530028851
Merged-chr7-132765795-3	chr7	132765708	132765908	+	745.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347630, intron 2 of 3)	intron (NM_001347630, intron 2 of 3)	11108.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	2.96603335635597	2.87033362381309	3.08234828338938	3.20402661366368	2.80305646438566	3.01139532680262	2.83043135218204	2.96493122102158	-0.622661804549599	0.308464350287452	0.620793493346942
Merged-chr5-30806310-4	chr5	30806225	30806425	+	756.325012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8316.0	NM_133350	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	4.25798002215236	4.19440490273638	3.78924633975542	4.05049466411265	4.40003677483723	4.59098718248037	4.10228396379179	4.25595754755284	0.65540247892513	0.116421253250885	0.377476808870985
Merged-chr7-44356563-4	chr7	44356507	44356707	+	880.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034115, intron 24 of 24)	intron (NM_001034115, intron 24 of 24)	18423.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	3.48529784633861	3.96888849577457	3.78219650890561	3.62534397770367	3.8812791483816	3.90282880961553	4.12978318870347	3.97660519648977	0.710380555766315	0.120712901417706	0.384680506725841
Merged-chr3-10307794-4	chr3	10307688	10307888	+	922.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6605.0	NM_029310	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	4.86535919473579	4.44638225649896	4.76012638732943	4.69476693113254	4.72689696806358	4.64933901439169	4.62293719780453	4.96052051402799	0.106483835161793	0.760412552867736	0.906091991304471
Merged-chr8-122523365-3	chr8	122523256	122523456	+	813.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037298, intron 1 of 50)	intron (NM_001037298, intron 1 of 50)	27973.0	NM_001037298	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	3.18952800450548	3.0752705802181	3.34649474651936	3.23710981297841	2.93878857823752	2.91121964847698	3.00149786486415	3.13151431653226	-0.901761298750519	0.122016069686457	0.387169303861106
Merged-chr10-59590044-4	chr10	59589951	59590151	+	912.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033259, intron 1 of 7)	MLT1N2|LTR|ERVL-MaLR	26641.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	4.7844353439579	4.72232700515069	4.71341379105909	4.52829304916165	4.41736677418433	4.68851482349465	4.49350270186667	4.71028506129097	-0.227745050478754	0.521955921543758	0.7817525755964
Merged-chr2-118389789-3	chr2	118389694	118389894	+	868.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177806, intron 1 of 37)	intron (NM_001177806, intron 1 of 37)	682.0	NM_001177806	27103.0	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding	2.95719889212398	3.35724717375133	3.03634704282333	3.03327820909047	3.90806169182511	3.86570347315151	3.6315666250466	3.64581580682503	2.28552390331035	3.36961749149202e-05	0.00080162434300438
Merged-chr13-20232282-4	chr13	20232158	20232358	+	967.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 4 of 21)	intron (NM_080288, intron 4 of 21)	141751.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.28362479271866	4.58850331924242	4.95357588614579	5.41922358629329	5.4345512874416	4.84261016673574	5.31461486907634	5.41851891519188	0.304331852931144	0.405889563778103	0.702456276834042
Merged-chr3-121163594-3	chr3	121163458	121163658	+	849.166626	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028456, intron 1 of 4)	intron (NM_028456, intron 1 of 4)	8137.0	NM_028456	66568.0	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding	3.38514179888391	3.50066992553372	3.24081772185361	3.28849967570413	4.47602793603925	3.92341036388108	3.96914986015937	3.94080674154662	2.25674251748313	5.53023839870288e-06	0.000162123904028531
Merged-chr4-133584368-4	chr4	133584266	133584466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133884)	promoter-TSS (NM_133884)	-7.0	NM_001290742	100210.0	Mm.274001	NM_133884	ENSMUSG00000028848	Gpn2	AI838661|Atpbd1b|R74630	GPN-loop GTPase 2	protein-coding	5.95016498283849	6.06143341302603	5.69182180483867	5.68296629710458	5.64772554729092	6.01379198746208	5.87779045400082	5.63472360596815	-0.0879757561876894	0.742624591923309	0.89853940009025
Merged-chr7-143008741-3	chr7	143008650	143008850	+	913.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020286, intron 2 of 7)	intron (NM_020286, intron 2 of 7)	3091.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	3.1895722971426	3.38907764633796	3.13094535848339	3.28136417096951	3.12898101907489	3.24075666019154	2.9951044919413	3.06769035625803	-0.563149558197692	0.315683920254707	0.627532766213584
Merged-chr4-33289597-4	chr4	33289485	33289685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20726.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	5.81841659990299	5.61046073496689	5.93058057345354	5.8783164161341	5.82682838712759	5.73842957279801	5.71845126988969	5.64095362101317	-0.130660589821707	0.607991193454487	0.83032239482552
Merged-chr16-37651783-1	chr16	37651683	37651883	+	612.5	f0_balb.idr	intron (NM_026610, intron 1 of 2)	intron (NM_026610, intron 1 of 2)	2585.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	3.44174371634287	3.26187627668953	3.22946735273832	3.27927119831411	3.09888471085616	3.08284950961887	3.15908266869939	3.28431812284633	-0.562405455792625	0.304104961261407	0.616773351149095
Merged-chr13-48227876-4	chr13	48227774	48227974	+	984.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102303, intron 1 of 2)	CpG	-33553.0	NM_031166	15904.0	Mm.458006	NM_031166	ENSMUSG00000021379	Id4	Idb4|bHLHb27	inhibitor of DNA binding 4	protein-coding	5.4061719556518	5.59224462706262	5.59840486650291	5.81889004220829	5.34345049815616	5.09338584439302	5.59501715472777	5.40334201470503	-0.441971424895023	0.129458214333709	0.400360889731452
Merged-chr4-139161243-4	chr4	139161131	139161331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	19424.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	6.05149582284954	5.99258469701566	5.46923052591695	5.7140055252795	6.2687564516146	5.79912259580722	6.25989933504102	5.77729170161405	0.371026906086616	0.188861702039135	0.487687851483034
Merged-chr4-75315174-4	chr4	75315060	75315260	+	991.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26|LTR|ERVK	-36868.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	4.74078561220032	4.88705585950902	5.09239284118926	4.65437589734738	5.04655034176013	5.06714187382093	5.15506210670083	4.51971200854618	0.257309566554105	0.465919813235596	0.746258906389711
Merged-chr8-36149544-2	chr8	36149431	36149631	+	796.583374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-6479.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	3.70980621523724	3.58291953488777	3.7961896810099	3.98508637133384	2.75403258860423	2.98499785245637	2.86313460956788	2.86919344595986	-5.23810106690956	3.01487287501878e-07	1.16818528236778e-05
Merged-chr5-122702994-4	chr5	122702912	122703112	+	756.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-4532.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	3.93716685664364	3.46745868446596	3.75026493241903	3.64926070430281	3.72754122170202	3.70512357076818	3.51802669461601	4.01799058064373	0.148070053484975	0.762049686747047	0.906776947564005
Merged-chr6-34907351-4	chr6	34907268	34907468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013366, intron 3 of 14)	intron (NM_001013366, intron 3 of 14)	3463.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	7.13226389876256	7.3205838045335	7.32282798202141	7.15808700150137	7.22139876621067	6.88273906292269	6.50046090462584	6.83571637283336	-0.463234779137831	0.0369371851791769	0.191489577849136
Merged-chr16-44726057-4	chr16	44725932	44726132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145972, intron 1 of 8)	intron (NM_145972, intron 1 of 8)	1731.0	NM_145972	212547.0	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	6.31957344442098	6.33794133963203	6.08204342909041	6.31680314477828	6.62001334934287	6.44076082066484	5.937293980853	6.16229474221937	0.0828526264457528	0.742990415653229	0.898691548174051
Merged-chr5-43872820-4	chr5	43872719	43872919	+	964.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	MLT1H-int|LTR|ERVL-MaLR	4010.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	5.29292863940154	5.29300517846151	5.29383915004021	5.2131615300624	5.17359338969816	5.21322786940973	4.97821189225176	4.96183820224058	-0.334809273373125	0.260097235840488	0.571879688317119
Merged-chr11-116626937-1	chr11	116626837	116627037	+	555.0	f0_c57.idr	promoter-TSS (NM_172572)	promoter-TSS (NM_172572)	82.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	3.3671310375792	3.79300618006542	3.65233485129974	3.37262774737029	3.55523145022831	3.48208412180842	3.68665112341631	3.74842958870996	0.218630680778202	0.663497329919962	0.860575753363866
Merged-chr1-182282314-4	chr1	182282222	182282422	+	977.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360783)	promoter-TSS (NM_001360783)	-127.0	NM_001360783	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	5.87970800589495	6.0078616001667	6.22801028089151	5.73638738919053	5.59592652410859	5.57988428881007	5.08697416023098	5.8985629564487	-0.64879301214705	0.0311476134881406	0.171665193997086
Merged-chr14-54902343-4	chr14	54902250	54902450	+	929.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	8207.0	NM_019402	54196.0	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	4.79812149923293	4.7211343366777	4.87233012175784	4.8864747915554	5.12657471306029	4.63551509785631	5.04496499401768	4.75743630820271	0.190434986487627	0.573400181399443	0.811880637183087
Merged-chr11-115513684-6	chr11	115513533	115513733	+	873.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008258, intron 1 of 4)	intron (NM_008258, intron 1 of 4)	760.0	NM_008258	15374.0	Mm.1775	NM_008258	ENSMUSG00000020737	Jpt1	Hn1	Jupiter microtubule associated homolog 1	protein-coding	3.41535993302319	3.1353547249373	3.51959563361085	3.06963217995915	3.19775003345292	3.41761890876297	3.45406991382935	3.41388534762487	0.302288792482188	0.581365211932263	0.816253350773532
Merged-chr2-66192015-4	chr2	66191915	66192115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001047604, intron 25 of 28)	intron (NM_001047604, intron 25 of 28)	64602.0	NM_001047604	73668.0	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	5.48953013288017	5.64423837490446	6.1678029757554	6.11570579501922	5.34429681836288	5.4160726606262	5.2098202732161	5.45739147693726	-0.912285008801573	0.00243532068403422	0.0272210569988807
Merged-chr7-45741406-4	chr7	45741269	45741469	+	961.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360784, intron 1 of 5)	MTD|LTR|ERVL-MaLR	1109.0	NM_001360784	54200.0	Mm.271634	NM_017465	ENSMUSG00000003271	Sult2b1	AI326997|BB173635|ST2B1|SULT2B	sulfotransferase family, cytosolic, 2B, member 1	protein-coding	3.81504263510717	3.84263387112628	3.87773245610908	3.99910526064681	4.51218246795207	4.51311088688658	4.62153234361868	4.9138650641795	1.8002696142707	1.45271046008131e-05	0.000384968271921548
Merged-chr16-24434207-4	chr16	24434107	24434307	+	952.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-13884.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	4.10847723031611	3.90491693281681	4.42089790101114	4.27555089455032	4.41446183544819	4.0723837812872	4.43874748899484	4.4945245676993	0.419980969738483	0.308256815295201	0.620673017903232
Merged-chr12-17774991-4	chr12	17774902	17775102	+	899.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	84193.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	4.49673029582287	4.50598315365973	4.71356995702874	4.18095985199928	4.94360214817263	4.85072409799675	5.42014734281293	5.05712570477897	1.27729079617731	0.000408701021335167	0.006553487271371
Merged-chr18-36725623-4	chr18	36725509	36725709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009841, exon 2 of 2)	exon (NM_009841, exon 2 of 2)	1206.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	5.73943825844995	5.40519731139188	5.25895493190221	5.35007890787363	5.37958076740075	5.49772420705599	5.38515152864077	5.40836657935089	-0.0474884294448242	0.867758920058121	0.950439505913752
Merged-chr1-184732724-4	chr1	184732610	184732810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008250)	promoter-TSS (NM_008250)	-217.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	7.16186573999834	7.00390875364908	6.6476411061293	6.96359503898217	7.44468999937038	7.48035294491845	7.45577905444387	7.38719161096827	0.656183883695287	0.000625213179504548	0.00922322257076771
Merged-chr9-83538365-4	chr9	83538277	83538477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-9961.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	7.57302550265675	7.18582609921992	7.65715686871045	7.70975778677155	7.32832002055031	7.30358801135372	7.41133642108496	7.05798501136016	-0.358411149634872	0.0760741078031232	0.2978645095615
Merged-chr19-6402179-4	chr19	6402099	6402299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011242, intron 2 of 16)	intron (NM_011242, intron 2 of 16)	1616.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	5.67659255795721	5.33963397703383	5.40135497897433	5.54407646381331	5.60517887260954	5.69447722569327	5.85297210331075	5.72219587105474	0.369013097826595	0.166706281096634	0.458057764222248
Merged-chr10-20059076-4	chr10	20058993	20059193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 10 of 29)	intron (NM_008580, intron 10 of 29)	-89827.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	6.30984933202961	5.97706256173414	6.40799492386283	6.39703653773921	5.46942824903038	5.499432989421	5.74384505546053	5.89176216284261	-1.00505275438421	0.000140497640962524	0.00270073894293718
Merged-chr1-157412060-2	chr1	157411960	157412160	+	995.8333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027984)	promoter-TSS (NR_027984)	-292.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	4.43593896260181	4.36456585663043	4.56043627877011	4.27639740030732	4.63419594026667	4.5222649394778	4.72009252845804	4.47639097773978	0.439743931808674	0.223187865978267	0.53121133271385
Merged-chr4-53127783-4	chr4	53127708	53127908	+	966.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 4 of 49)	intron (NM_013454, intron 4 of 49)	32087.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	4.87876552878961	4.5326865299162	4.77642835524178	4.74075398715381	4.67172035863248	4.6286998935763	4.85579095073592	4.35344995474604	-0.20000415079675	0.576267714815065	0.813465010170186
Merged-chr5-115507383-3	chr5	115507244	115507444	+	944.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	668.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	4.38744537655181	4.20115713262971	4.93376205101245	4.12509524769147	4.06054131953244	4.28339607762056	4.18686880017935	4.58233760532442	-0.362111312676626	0.41687242071871	0.710737072369088
Merged-chr14-31496263-4	chr14	31496137	31496337	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028932, intron 1 of 5)	intron (NM_028932, intron 1 of 5)	1158.0	NM_028932	74427.0	Mm.491208	NM_028932	ENSMUSG00000021890	Eaf1	4933403C17Rik|AI666536	ELL associated factor 1	protein-coding	4.68572547834447	4.60416097333668	4.61249467602126	4.4431908085589	4.28969592835984	4.53600292035621	4.51300975170414	4.48984405799093	-0.286559342909204	0.431740011847726	0.721855264101035
Merged-chr10-67098636-4	chr10	67098536	67098736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1648.0	NM_178606	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	5.46565092101499	5.3662132526154	4.62889694479609	5.29960828785812	5.41454071215025	5.50421412322093	5.15486668128666	4.72015013567091	0.00811094549593738	0.982567667090533	0.993807144340765
Merged-chr1-173743245-3	chr1	173743179	173743379	+	724.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-1470.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	2.96557262189706	2.93709283904905	2.89450748504319	2.79376109570984	3.195057126684	3.39219346655534	3.31533111564243	3.61060025898291	1.95097121585973	0.000587248505245955	0.00879254551007611
Merged-chr9-95574564-4	chr9	95574476	95574676	+	989.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14759.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	5.53152940450059	5.61057184418366	5.61253298967008	5.84730693763449	5.77326483204646	5.25612989936249	5.16181831906363	5.77746663300929	-0.222683839048339	0.464073869548303	0.745211298509957
Merged-chr10-96266389-4	chr10	96266300	96266500	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40193.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	4.99414626277176	4.73827223680867	4.89965605940624	4.62822357418091	4.81512181555513	4.3475870976614	4.58209358739556	4.71947689671417	-0.364393063168647	0.315330757672775	0.627105605858262
Merged-chr17-13739050-4	chr17	13738906	13739106	+	764.737488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022311, intron 1 of 2)	intron (NM_022311, intron 1 of 2)	-21535.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	3.71691511586143	3.48358610926421	3.71745820700166	3.53206614503952	3.6254269468006	3.4996440921871	3.5485613858406	3.71526168215315	-0.0236054536286816	0.960807763602511	0.986019634156535
Merged-chr11-58009837-4	chr11	58009757	58009957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028451, intron 1 of 18)	CpG	793.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	5.40795223083783	5.50113369560899	5.52442620881315	5.13389895339609	5.60974163874649	5.77868397652144	5.69879228086663	5.77000849862475	0.566814041813973	0.0396808992717148	0.200771021414657
Merged-chr10-100490962-3	chr10	100490868	100491068	+	677.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146009, intron 4 of 52)	intron (NM_146009, intron 4 of 52)	2679.0	NM_146009	216274.0	Mm.229114	NM_146009	ENSMUSG00000019971	Cep290	BC004690|Nphp6|b2b1454Clo|b2b1752Clo	centrosomal protein 290	protein-coding	3.0358764290062	3.60570773666704	3.03615399581355	3.421719592986	3.55448750308142	3.42276168123893	3.94732733570167	3.30626846466422	0.915751538915099	0.133927680712321	0.407525580772158
Merged-chr4-155562937-4	chr4	155562842	155563042	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159637)	promoter-TSS (NM_001159637)	561.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	4.9167774033794	4.72568090881762	5.01319740699363	4.48894412976259	4.74238571386919	4.47318875031193	4.63992244071694	4.97869840549116	-0.128076198598901	0.72829460318208	0.891889296146056
Merged-chr18-44724569-3	chr18	44724461	44724661	+	942.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001085373, exon 3 of 19)	exon (NM_001085373, exon 3 of 19)	-62295.0	NM_001085374	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	3.81445260900153	3.9246959438672	3.76675534636693	3.81357283256532	3.31886778722203	3.72790425718353	3.35598554224306	3.66229470822504	-0.991609403886701	0.0470599038533797	0.22315315576102
Merged-chr5-124116197-4	chr5	124116121	124116321	+	990.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025671)	TTS (NM_025671)	113.0	NM_144509	65105.0	Mm.29430	NM_144509	ENSMUSG00000029404	Arl6ip4	AA408210|AA408365|Aip-4|Srp25	ADP-ribosylation factor-like 6 interacting protein 4	protein-coding	4.97512622572264	4.72113970738194	5.00768498548693	4.87851515904243	4.66999456044923	4.78163122437114	4.49660793115792	4.83717269502973	-0.407130454668485	0.229448320055543	0.53847352368063
Merged-chr14-30713933-4	chr14	30713837	30714037	+	994.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019460)	promoter-TSS (NM_019460)	-912.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	4.95288003919786	5.42897149547841	4.506164838052	4.68424130301633	5.20961172698046	5.4284355970806	4.33451848605682	4.45420710082022	0.00204350583719759	0.996470703848971	0.998631302066398
Merged-chr9-114731154-4	chr9	114731080	114731280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026036)	promoter-TSS (NM_026036)	-23.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	7.57239762871564	7.80321746127364	7.49791185302664	7.6133458129548	7.77668997438718	7.99272197049708	7.95328017883967	8.09933669692681	0.426690361140254	0.0145316576014124	0.102552930439315
Merged-chr1-171614159-4	chr1	171614070	171614270	+	802.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6760.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	4.15572677951857	3.94165023524121	3.53699827793684	3.8311937648392	3.99760689709639	3.84082619790798	3.91633707178948	4.11215254634014	0.248781997919945	0.586802143998187	0.818903628768642
Merged-chr12-78219356-4	chr12	78219208	78219408	+	985.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7347.0	NM_172952	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	4.67483402331619	4.70103616116004	4.59489778195472	4.79349470352098	4.80726698683974	4.99315239785341	4.53205815677639	4.50602127690682	0.0537485010603599	0.879208332193508	0.954767184529974
Merged-chr1-173880321-4	chr1	173880250	173880450	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170853)	promoter-TSS (NM_001170853)	-163.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	6.2496953683851	5.69183703804567	5.44043865434255	5.91670560456621	4.89726651196566	5.13543767307293	5.0847068193579	5.5212702973294	-1.1964680279259	0.000270283478769899	0.0046571066897513
Merged-chr11-22857287-4	chr11	22857168	22857368	+	989.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	2467.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	5.13306586321348	5.12861962593279	5.09991042822884	5.67563478091665	5.2124794367453	5.34148542422905	5.32281556936054	4.95082606767196	-0.170916154341035	0.606957078847028	0.829739641131306
Merged-chr10-34158972-4	chr10	34158884	34159084	+	819.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 4 of 5)	ORR1E|LTR|ERVL-MaLR	-31012.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	4.05271514735914	3.96179244600097	3.58566651618907	4.20666745538875	3.85915762026463	3.76438917627318	3.99139965844971	3.7030847696098	-0.416127967429438	0.380276376187313	0.682717284552091
Merged-chr10-115312415-4	chr10	115312332	115312532	+	965.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024454, intron 1 of 6)	intron (NM_024454, intron 1 of 6)	3159.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	4.75938908579965	4.90403215794938	4.76015246553595	5.16258918090149	4.90048100356127	5.18589038733514	4.65599715581019	5.10585693377145	0.0939299493467048	0.788609174221627	0.91812687233996
Merged-chr2-27476103-3	chr2	27476004	27476204	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113574)	promoter-TSS (NM_001113574)	-431.0	NM_001113574	67382.0	Mm.28721	NM_023336	ENSMUSG00000026918	Brd3	2410084F24Rik|AW060456|Fsrg2|ORFX|RINGL3	bromodomain containing 3	protein-coding	4.91824176366602	5.01739406915913	4.63871223295292	4.47391455478394	4.97504192013959	5.34988227898887	5.26407477886899	4.91573792130193	0.724729395587548	0.0372454302723764	0.192526687099308
Merged-chr5-136084495-4	chr5	136084398	136084598	+	928.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	582.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	4.41233652454064	4.71022068346374	4.57686318677688	3.988545648837	4.50048052657051	4.49878662996368	4.30357283746852	4.68401666884076	0.151601055152923	0.713382301072851	0.885339563529906
Merged-chr1-165621916-4	chr1	165621826	165622026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	12615.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	5.38141045426054	5.07171071941315	5.93721582211547	3.99584704751303	5.44916550696277	5.27202830897559	5.5419698134765	5.73073643486126	0.354135518192627	0.594535961993807	0.823449111030039
Merged-chr7-38124274-2	chr7	38124173	38124373	+	698.666626	f0_balb.idr|f1_balb.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-16783.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	3.6818978420702	3.27921251600389	3.22477524400813	3.36215407924896	2.69641690935559	2.79876037924505	2.76116600404188	2.7673131051158	-3.24389300226847	2.39900458851285e-05	0.000597770393677887
Merged-chr7-141428614-3	chr7	141428516	141428716	+	752.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021316, intron 1 of 1)	intron (NM_021316, intron 1 of 1)	946.0	NM_001360485	57754.0	Mm.87027	NM_021316	ENSMUSG00000060240	Cend1	1500001H12Rik|AI415214|BM88	cell cycle exit and neuronal differentiation 1	protein-coding	3.08212312452797	3.14574553612479	3.20796665577244	2.82645511336054	3.07355897445339	3.19585440160227	3.50864678104739	3.56868463192009	1.08091752346426	0.0628041047820484	0.265603009947237
Merged-chr9-40776636-3	chr9	40776545	40776745	+	859.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 5 of 6)	RSINE1|SINE|B4	-24628.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	3.50131905321613	3.22151750126877	3.1983443385711	3.74931558687124	2.72924803853057	2.83283093237834	2.93819409025619	2.72286726303394	-3.05797475548368	4.07809511179583e-05	0.000948143928293569
Merged-chr4-8842440-4	chr4	8842303	8842503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 18 of 36)	L1M5|LINE|L1	91079.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	5.77255412427422	5.5478350509666	5.4525988169259	5.52500712729308	6.32604019828294	6.47012599919243	6.29705159347184	6.32521580151567	1.22812629719829	2.44376498791057e-07	9.6421700706478e-06
Merged-chr1-184034824-2	chr1	184034724	184034924	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028516)	promoter-TSS (NM_028516)	443.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	4.57369405961001	4.38410519301637	4.87135047773358	4.34937212207634	4.62530730128034	5.12851119219344	4.51180760020664	4.86804140370689	0.548200253824993	0.153059610157835	0.437555330104179
Merged-chr3-52007595-2	chr3	52007495	52007695	+	871.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	97411.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	3.00456579319528	2.84695042156934	3.06273218010279	2.71192645243573	2.85285817479738	2.92260822396551	3.10492811233288	3.0033569077078	0.299386951302026	0.622047365924041	0.838154589422968
Merged-chr1-151285304-4	chr1	151285207	151285407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59179.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	5.96628440445227	6.58787863308337	6.18006064460626	6.25785695090735	6.18127872096404	6.04907986048893	6.0471099748228	5.91594050341099	-0.330560069449564	0.188865129942113	0.487687851483034
Merged-chr6-108306423-4	chr6	108306314	108306514	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	93318.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	4.99554061630568	5.01139631991326	5.13060328366872	5.24060550281527	5.23706115629642	5.23796049808336	4.93715766696075	4.95730042080473	-0.0073639950792981	0.981180361226596	0.993217223471419
Merged-chr11-6200198-4	chr11	6200084	6200284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173748, exon 1 of 6)	5' UTR (NM_173748, exon 1 of 6)	267.0	NM_173748	209586.0	Mm.25321	NM_173748	ENSMUSG00000053838	Nudcd3	AI427847|BC024322|mKIAA1068	NudC domain containing 3	protein-coding	6.0458111118504	6.17920047552354	5.8056634898802	6.03341640760519	6.28619865030118	6.32818052428795	6.10047483185933	6.66909728065201	0.509014243837592	0.0394211212059198	0.199925613560112
Merged-chr6-125274974-4	chr6	125274871	125275071	+	915.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	9446.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	3.86877006586187	4.25472229095875	4.11350466244659	3.45715273417975	4.37866422377344	4.19423157652731	3.6224296085775	3.91963437691002	0.285500781989845	0.582775198131469	0.816777579274426
Merged-chr10-79767609-4	chr10	79767486	79767686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027505)	promoter-TSS (NR_027505)	-634.0	NR_027505	70294.0	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	4.57466256181711	4.83634757367828	4.74769484718721	4.64325417573976	5.09665297514666	5.10839768875276	5.01106389621665	5.23955834476507	0.825290325836499	0.00919126083670625	0.0742930678055774
Merged-chr3-146464970-2	chr3	146464843	146465043	+	675.5	f0_balb.idr|f1_balb.idr	3' UTR (NM_001293672, exon 7 of 7)	3' UTR (NM_001293672, exon 7 of 7)	14476.0	NM_001293672	74245.0	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	3.04883519849714	2.88083152952494	2.88471493382958	3.23849863415727	2.59056212144767	2.49587819105393	2.61911971097767	2.55212869294707	-2.49547518213048	0.00103993709866452	0.0138762045354289
Merged-chr3-88649523-4	chr3	88649395	88649595	+	939.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3647.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	4.69103997756386	4.82940560663743	5.09175209996169	4.80104099237921	4.75204702262191	4.35537209040766	4.41291841700513	4.90433403680888	-0.471172667720914	0.201811250192302	0.504230998642117
Merged-chr13-9419385-4	chr13	9419286	9419486	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	142861.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	5.39183767379376	5.45135531224251	5.60573307244731	5.99481690407334	5.34834543389688	5.1284832631689	4.96334956000442	5.20213783982918	-0.845193616601409	0.00777185034048746	0.065793593647188
Merged-chr1-87907484-3	chr1	87907382	87907582	+	879.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177646, intron 3 of 29)	L1MD1|LINE|L1	-53183.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	3.61020212948755	3.60082355131114	3.19415223438094	3.62140933257025	3.45931746295784	3.44037482909382	3.8246744693808	3.44623341800798	0.0909893839006612	0.862660939011804	0.948226310734467
Merged-chr2-29632387-4	chr2	29632280	29632480	+	966.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	L1MB3|LINE|L1	12660.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	4.98136676556496	4.69589901320271	4.39314592504004	4.62357696847809	4.74257873488412	4.79614611739459	4.67966026046012	5.0695360788309	0.296722868422876	0.405366530150043	0.702255804744808
Merged-chr8-25593662-4	chr8	25593566	25593766	+	982.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173012, intron 3 of 10)	intron (NM_173012, intron 3 of 10)	3821.0	NM_173012	270035.0	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	5.13799467079406	5.04951178631853	5.13886085052087	5.49379583884643	5.12625540962428	4.89882603996182	5.26632210118616	5.28897059811636	-0.151356143732127	0.635443701556912	0.845728109373985
Merged-chr16-56729277-4	chr16	56729173	56729373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172825, intron 15 of 15)	MTB|LTR|ERVL-MaLR	-11823.0	NM_001357126	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	5.18383153867542	4.98327216268601	5.72445779970024	5.61507242269958	5.60940742053913	5.21747125386547	5.76222495109445	5.83081299486982	0.355480874284891	0.27898560218881	0.591185358088636
Merged-chr6-86600176-4	chr6	86600112	86600312	+	891.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27962.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	3.80666661525767	3.93145079700688	3.91284026750511	4.09278091357092	3.63709849387914	4.08532665982051	4.0387759630055	4.18322522720709	0.120084806695893	0.792256742624088	0.91954542417963
Merged-chr13-94976384-4	chr13	94976309	94976509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172590)	promoter-TSS (NM_172590)	65.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	7.27197708700711	7.48042892953326	7.2834498732983	7.02602856668592	7.1279061909067	6.84211465204233	6.9112809866397	7.0310592398021	-0.382806237156318	0.0609565475131047	0.260925815760845
Merged-chr7-80628844-4	chr7	80628737	80628937	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173863, intron 3 of 14)	intron (NM_173863, intron 3 of 14)	-7180.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	5.57981796492419	4.74488972614924	5.29532179971724	5.2717457351115	4.91903938896328	5.10446666697884	5.48110561608558	5.03416988415757	-0.193728509603112	0.579548168786245	0.815395210729895
Merged-chr10-59236652-4	chr10	59236525	59236725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14703.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	7.73388683939356	7.83216369926969	7.60897335214206	7.63508664581602	7.79785338103542	7.72264871174498	7.90985857375743	7.73791082844474	0.120003314601837	0.471699899132276	0.750014008853512
Merged-chr1-167266620-4	chr1	167266513	167266713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030724, intron 1 of 6)	MER21B|LTR|ERVL	18514.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	5.48582543917244	5.7142954677402	5.3662360141367	6.09230330060659	5.64961627726868	5.54346060387171	5.4875991205714	5.42415310650066	-0.317729735548976	0.296551212750234	0.608507761092495
Merged-chr2-103019259-4	chr2	103019133	103019333	+	963.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54280.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	4.98352783998438	4.87182115599709	4.57074643952663	4.69514360259491	5.03505385223211	4.703817858698	4.82583187612995	4.8095726262727	0.154504283002697	0.649599130723335	0.852797294781466
Merged-chr8-94876383-4	chr8	94876285	94876485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053246)	promoter-TSS (NM_053246)	-73.0	NM_053246	114255.0	Mm.203949	NM_053246	ENSMUSG00000040631	Dok4	-	docking protein 4	protein-coding	5.50151070372215	5.34343260016609	5.38943150419519	5.32455813855026	5.80258441694431	5.64880290306112	5.1732553827176	5.35580867142216	0.251203063040335	0.397662532674031	0.695998272762507
Merged-chr16-22446091-4	chr16	22446015	22446215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6545.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	5.26860358340546	5.07919044671135	5.2400710162297	4.8654884317893	5.10508962586116	5.18780043357817	4.83846902400118	5.42907872044449	0.0907812931631628	0.781311068133358	0.914858982946737
Merged-chr4-151068926-4	chr4	151068798	151068998	+	871.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 23 of 23)	intron (NM_001081557, intron 23 of 23)	-10945.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	4.1046475301768	4.01158538523552	3.86604085771179	3.941901430257	4.00500508007847	3.75531366952824	4.24832602139143	3.81029203236294	-0.0224894996176051	0.959447244716636	0.985513818852278
Merged-chr3-95053186-3	chr3	95053087	95053287	+	731.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10573.0	NM_008951	19185.0	Mm.2261	NM_008951	ENSMUSG00000005625	Psmd4	Af1|Mcb1|angiocidin	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	protein-coding	3.55762776078079	3.65309155197013	3.50126972422509	3.40818629766678	3.64908469341091	3.93045250942408	3.59798136239486	3.49943581521187	0.475836863228114	0.327162730659435	0.638693944031598
Merged-chr19-44104600-4	chr19	44104506	44104706	+	974.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162410, intron 1 of 20)	intron (NM_001162410, intron 1 of 20)	2871.0	NM_007700	12675.0	Mm.3996	NM_007700	ENSMUSG00000025199	Chuk	AI256658|Chuk1|Fbx24|Fbxo24|IKBKA|IKK alpha|IKK1|Ikka|NFKBIKA	conserved helix-loop-helix ubiquitous kinase	protein-coding	4.77141723746449	4.91576309527382	4.40320836182367	5.16650529052041	5.24152999896601	4.73531482218114	5.18476950433842	5.20725052703845	0.481121816776413	0.195644559501836	0.496467883204978
Merged-chr2-29964529-2	chr2	29964429	29964629	+	859.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1031.0	NM_001177668	20740.0	Mm.204969	NM_001076554	ENSMUSG00000057738	Sptan1	2610027H02Rik|Spna-2|Spna2	spectrin alpha, non-erythrocytic 1	protein-coding	3.0933031344946	2.87885290009643	3.03921814603061	2.86561428407225	2.90207178731535	2.67932153883786	2.8505723398565	2.98065099795773	-0.474586917901378	0.444413767429426	0.730803662815541
Merged-chr11-46076672-4	chr11	46076561	46076761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291890, intron 3 of 22)	ORR1D1|LTR|ERVL-MaLR	20677.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	6.17292676485183	6.06677700949466	6.4565115718353	6.41347192896991	6.47740459310989	6.287463474815	6.83441699275947	6.62483704013319	0.409015402481678	0.0873685130697984	0.322434976502057
Merged-chr16-65577432-2	chr16	65577334	65577534	+	809.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14737.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	2.77636719667756	2.51059456352315	2.84258510764634	2.92045529060712	3.14770857805276	2.94998843116331	3.06430176267316	2.90390878425388	1.05415907946572	0.108778233055743	0.364096547670458
Merged-chr5-111269860-4	chr5	111269757	111269957	+	750.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 13 of 22)	intron (NM_001267622, intron 13 of 22)	-60840.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	3.81495632245497	3.78988834343628	3.54157141334124	3.64340846837151	3.43322632582361	3.98599255949323	4.02220378295464	3.71059576857848	0.303403768247482	0.537167542177107	0.790977285921248
Merged-chr11-77372518-6	chr11	77372449	77372649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	24269.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	4.82856562792217	4.75919416578135	4.78863722437825	5.28356176747808	5.16805372674195	5.25649912735315	5.02537726998098	5.39753689882941	0.485033143617918	0.156397909642065	0.442290171016728
Merged-chr14-41013773-4	chr14	41013646	41013846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316735)	promoter-TSS (NM_001316735)	87.0	NM_001316734	70564.0	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	6.32582060748632	6.26432153024941	6.51408271905593	6.59045364558652	6.08190957534142	6.17150186743235	6.36552304308033	6.46113152216113	-0.249965791491531	0.284478611288916	0.596324963525583
Merged-chr10-94967384-4	chr10	94967296	94967496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22818.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	6.13682137706	6.38719885843466	6.25213369692773	6.12355413323963	6.43080031387972	5.86778666296706	5.81825580563063	5.68411422445581	-0.344277682297876	0.214676539684524	0.520611271105064
Merged-chr4-98923299-4	chr4	98923196	98923396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146144)	promoter-TSS (NM_146144)	-514.0	NM_001301414	230484.0	Mm.371692	NM_146144	ENSMUSG00000028560	Usp1	-	ubiquitin specific peptidase 1	protein-coding	9.38802962490005	9.56789429763106	9.44350993499116	9.53487546462677	9.44857945060746	9.68357025722155	9.54072913443707	9.45887656143785	0.0580804198503282	0.677516226886365	0.867729370835336
Merged-chr9-65693191-3	chr9	65693110	65693310	+	838.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172536, exon 10 of 10)	3' UTR (NM_172536, exon 10 of 10)	16662.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	3.64784665030698	3.11123528288533	3.55241194361509	3.18319061610319	3.26095138876742	3.56529127746523	3.26337720236798	3.39137262552467	-0.0407074065004942	0.941810374632641	0.97898049638905
Merged-chr8-105397931-2	chr8	105397831	105398031	+	832.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301173, intron 2 of 15)	intron (NM_001301173, intron 2 of 15)	15571.0	NM_177791	279499.0	Mm.67628	NM_177791	ENSMUSG00000051648	Kctd19	4922504H04Rik	potassium channel tetramerisation domain containing 19	protein-coding	3.01059199331036	3.10756310131441	2.88308314138643	2.91546472833203	3.0794486685426	3.18048724138603	3.00030683342958	3.00947052532671	0.37217902865295	0.515477600426104	0.777533445789008
Merged-chr6-125084594-4	chr6	125084500	125084700	+	962.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11381.0	NM_001346610	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	5.04073477978747	4.69117548358528	4.76228239110278	5.19424924969831	4.86753952629431	4.58814777613028	5.13509315935069	4.59301544569087	-0.264008636614263	0.470238104723005	0.748973856088317
Merged-chr15-58986013-1	chr15	58985913	58986113	+	801.5	f0_balb.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	52203.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	3.33401586778096	3.15739166038883	3.33450858663643	3.68547020146095	2.76313534133847	2.78411555972008	3.09755703188465	3.04410906546675	-2.01790419336717	0.0022988778553324	0.0260477279313443
Merged-chr2-143988944-1	chr2	143988844	143989044	+	557.0	f0_c57.idr	exon (NM_024281, exon 2 of 24)	exon (NM_024281, exon 2 of 24)	22319.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	3.13701045240361	3.04041973263369	3.07144266688978	3.20696401009107	3.37293605969992	3.37360833493409	3.30451652081512	3.6570033948514	1.11985065296374	0.0394083228034384	0.199903435634688
Merged-chr18-3006329-3	chr18	3006228	3006428	+	696.344421	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117084.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	4.45320062045007	4.22600913352771	4.45391992668718	4.61443720255142	3.99467799192941	4.26845423621153	4.02136471097425	4.52754220088176	-0.574002854583641	0.166432476437427	0.457747188575719
Merged-chr16-55799051-4	chr16	55798947	55799147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23091.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	8.09620865832338	8.24186153641075	8.218332222503	8.15006838674026	7.8865438753525	8.16929254447621	7.89712726376728	7.96548876724649	-0.253237817610286	0.11582506770978	0.376560001979254
Merged-chr10-128495576-4	chr10	128495484	128495684	+	871.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172259, intron 4 of 6)	intron (NM_172259, intron 4 of 6)	-1698.0	NM_010860	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	4.13253351548837	4.36199429869308	4.22513268856146	3.44222661385999	4.27050724854078	4.05240970649476	4.3703068725786	4.34891425441587	0.465634612070909	0.334848872678672	0.645239354575747
Merged-chr4-147814703-4	chr4	147814603	147814803	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-4915.0	NM_001127189	100041677.0	Mm.327194	NM_001127189	ENSMUSG00000078495	Zfp984	Gm13157	zinc finger protein 984	protein-coding	4.9354681339554	5.34313748879258	5.05159512178645	4.73490102859232	5.62872973001038	5.87245372912242	5.40390776567164	5.31321093612187	0.989883103485228	0.00209949315670707	0.0242794189116577
Merged-chr15-31542125-4	chr15	31542002	31542202	+	950.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11065.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	4.34508183717785	4.086141092584	4.21322941015129	4.36133893810123	4.53000358816602	4.19002023542245	4.48190775351806	4.01012640516593	0.165268759919319	0.687183287296725	0.872152812040952
Merged-chr3-15470300-4	chr3	15470196	15470396	+	708.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43869.0	NM_001002898	320832.0	Mm.330924	NM_178792	ENSMUSG00000095788	Sirpb1a	9930027N05Rik|SIRP-beta|Sirpb|Sirpb1	signal-regulatory protein beta 1A	protein-coding	3.9817394330172	3.89449817071661	4.38925081303784	2.65800588021135	4.11725399491412	3.78453974986398	3.81365431854219	4.0720167533539	0.0463637357017826	0.97159758931996	0.989698355367312
Merged-chr9-116164176-4	chr9	116164066	116164266	+	939.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	11197.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.87542722002427	4.85888417802851	6.1946945911844	6.15943963197588	5.03117752106144	4.85055706444393	5.13876396743259	4.93117167782754	-1.54805679032873	5.81084164057895e-05	0.00128650045765092
Merged-chr17-43667228-4	chr17	43667119	43667319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018887)	promoter-TSS (NM_018887)	-5.0	NM_001357123	74011.0	Mm.288697	NM_028711	ENSMUSG00000023912	Slc25a27	3632410G24Rik|9430092A03Rik|D530043E16Rik|Ucp4	solute carrier family 25, member 27	protein-coding	6.01662790143529	5.81045244655674	5.32750263141411	6.24895299188398	6.22195673566259	6.05908696379013	6.27035482026162	5.94774008825306	0.343782780120334	0.241340888819501	0.551890217226083
Merged-chr6-137473124-4	chr6	137473039	137473239	+	927.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	46756.0	NM_001271589	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	4.70706813626994	4.8640076180413	5.18231389169529	5.22999949213656	4.6199216440503	4.66463117077405	4.87515715226099	5.09188114140907	-0.414383206865688	0.24446230002967	0.555701660737218
Merged-chr8-91312523-4	chr8	91312459	91312659	+	885.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011936)	promoter-TSS (NM_011936)	663.0	NM_173431	244585.0	Mm.324592	NM_173431	ENSMUSG00000033282	Rpgrip1l	1700047E16Rik|4931437C01|Ftm|Nphp8	Rpgrip1-like	protein-coding	3.53934416504526	3.78475405894309	3.53975309970793	3.7324188489922	4.31265642228302	4.20727841762658	4.18814547771825	4.12256084595922	1.49232733332919	0.000802634103743815	0.0112750528656761
Merged-chr3-126625687-4	chr3	126625596	126625796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	28745.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	6.61106139390714	6.57431631157239	6.74928116184685	6.82660369480535	6.83886594802242	6.5996860846872	7.11663624609315	6.62348968025147	0.16137750970721	0.464186264002954	0.745275846107104
Merged-chr6-29536961-4	chr6	29536878	29537078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_012057, exon 9 of 9)	3' UTR (NM_012057, exon 9 of 9)	7696.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	5.3787476594583	5.60262402752041	5.81342617723799	6.12622527963715	5.83257062057272	5.62026968033967	5.58668810174795	5.6375511047965	-0.170896068718152	0.564226832591608	0.806609795481784
Merged-chr19-29461438-4	chr19	29461324	29461524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	MTC|LTR|ERVL-MaLR	50505.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	7.22337823772059	7.51827674868273	7.56199781342675	7.01553078204891	7.15662779493328	7.12656738606297	6.81660302160477	6.65975465517702	-0.518936606975292	0.0235938375030132	0.142683581956413
Merged-chr1-7077359-4	chr1	7077273	7077473	+	764.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11547.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	3.40522100989464	3.82812137756571	3.34085967396823	3.54887807881276	3.7720749981413	3.58290409173032	3.86048896567872	3.73690343339415	0.598524724339114	0.227151898355757	0.535840292074782
Merged-chr2-144267851-4	chr2	144267744	144267944	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024225, intron 1 of 12)	intron (NM_024225, intron 1 of 12)	-1642.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	6.00482564517138	5.87940406630578	6.28746047919425	6.74666445792158	5.91675129809503	5.45716705458501	6.01902682303434	6.74421731857108	-0.247544639877473	0.482223842007575	0.757123874495582
Merged-chr11-74830833-4	chr11	74830718	74830918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010813)	promoter-TSS (NM_010813)	-106.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	7.73734153984678	7.68965840887876	7.08950445224474	7.43151822181187	7.6529034634896	7.95416805478425	7.63713899410743	7.61069152381899	0.274123373946937	0.185448202667759	0.483393181883342
Merged-chr2-37735933-4	chr2	37735805	37736005	+	914.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-40344.0	NM_001163566	241324.0	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	4.04076251465719	3.94994412184914	3.90293861401162	3.80675569699809	3.79439836216423	3.55604682969787	4.02320469295378	3.90062646875375	-0.257561003785435	0.571681027478487	0.810781529929199
Merged-chr9-41999800-3	chr9	41999686	41999886	+	682.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357261, intron 26 of 42)	intron (NM_001357261, intron 26 of 42)	77427.0	NM_001357261	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	3.28284524357002	3.3265120006066	3.51159626981828	3.22265620920612	3.16201730750195	3.19588481781816	3.38881557332019	3.98291092438749	0.470046988032947	0.416134173871539	0.710072021761014
Merged-chr13-113636598-2	chr13	113636498	113636698	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18034.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	3.45063114084685	3.37665537963861	3.33656602187857	3.76239289972017	3.46800046468537	3.38652279162851	3.32493000967633	3.50277860339496	-0.288074521505154	0.585935757059606	0.818478990587386
Merged-chr1-33983745-4	chr1	33983653	33983853	+	876.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 3 of 102)	Lx6|LINE|L1	-28072.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	4.47920561600446	4.58924651065776	4.22724173163207	4.47459021626085	4.14724765115909	4.20436849556144	4.25415053774128	4.02401641960728	-0.719746907218372	0.0680981848788768	0.278573069579187
Merged-chr19-21897606-4	chr19	21897534	21897734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119294.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	6.8926193593593	6.68915366162862	6.94501272544295	7.11552366302148	7.00960044037611	6.5254180387783	6.90983675353318	6.40060558892472	-0.252067937086654	0.285330448135952	0.597040378146234
Merged-chr1-172368959-4	chr1	172368895	172369095	+	922.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039484, exon 2 of 2)	exon (NM_001039484, exon 2 of 2)	-7536.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	4.22680953388799	3.96738476139579	3.84699544468302	4.07036037231606	4.5306537380619	4.57587012265121	4.57270104308196	4.62695851923567	1.27933670923389	0.000954261253580214	0.0129670538613814
Merged-chr4-124908380-3	chr4	124908275	124908475	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256432, intron 8 of 16)	intron (NM_001256432, intron 8 of 16)	-13593.0	NR_040651	73628.0	Mm.398337	NR_040651	ENSMUSG00000085263	1700125G02Rik	-	RIKEN cDNA 1700125G02 gene	ncRNA	3.35645649355342	3.40512530154476	3.05939680881066	3.29914269020619	3.11389494130469	3.35789226742162	3.17544982364447	3.24426988450163	-0.251311698487247	0.646559993529838	0.851366985708531
Merged-chr16-32608926-4	chr16	32608838	32609038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011638)	promoter-TSS (NM_011638)	42.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	6.94183457421982	7.43782525608943	6.41690422291646	6.8084491224941	7.11100518177931	7.35631483063253	6.98345634240425	6.756116509165	0.157555703881148	0.551738147034713	0.799073691139046
Merged-chr7-132621712-2	chr7	132621612	132621812	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 1 of 6)	intron (NM_029609, intron 1 of 6)	11069.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	3.30763581364705	3.25223810129456	3.11260990764128	3.43098829635454	3.79918302919079	3.4209966958864	3.41066814380703	3.57815973429428	0.931840131250336	0.0826766467870152	0.312292562176446
Merged-chr12-27313140-3	chr12	27313029	27313229	+	855.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29589.0	NM_009234	20666.0	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	3.71807676309098	3.92355932888145	3.3626011378654	4.04630539692807	2.76019668098703	3.07342072945366	2.87061206027885	2.87671900590761	-4.6701650472199	8.70185719649097e-07	3.08780565986143e-05
Merged-chr16-3732819-4	chr16	3732714	3732914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11285.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	7.28353956280915	7.50038211465625	7.27429836258984	7.2851452529925	7.10469131050104	7.37517530159384	7.15096768034878	6.93282528222616	-0.260179894821392	0.176382668880704	0.471362567608772
Merged-chr8-82374674-4	chr8	82374555	82374755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	27931.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	6.92973797246461	6.97746307009531	6.61923032552111	6.83034212800443	6.9092518240331	6.84333074447191	6.66305978126979	6.34707843412064	-0.187073068811328	0.40369748395783	0.700922982752502
Merged-chr16-38377000-4	chr16	38376901	38377101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081984, intron 3 of 3)	MTC|LTR|ERVL-MaLR	14811.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	6.19634846991375	6.47040819566062	6.86747028015077	6.57546038405624	6.54907026039443	6.26678668835086	6.78237606351618	6.17180372815634	-0.117515893156127	0.646813403226933	0.851401409677112
Merged-chr4-109670405-2	chr4	109670305	109670505	+	758.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3649.0	NM_001301368	12580.0	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin dependent kinase inhibitor 2C	protein-coding	3.06270209775669	2.9055874399858	3.00333690582035	2.89487686600809	2.87350789671781	2.98254131742838	3.1615168382026	3.22446202154985	0.425372570026054	0.466673720709795	0.746440951133739
Merged-chr7-116603936-4	chr7	116603818	116604018	+	872.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	99549.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	4.09038480655578	4.24768860404415	4.18723700142379	4.09202102494421	4.39582706995595	4.48765228529517	4.02420499579106	4.35812718412704	0.438505849362783	0.270050873884426	0.581848624295301
Merged-chr3-142493677-4	chr3	142493558	142493758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3276.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	5.98001154034141	6.43588130291813	5.67340477304011	5.94130995630716	6.21715065171795	6.36565988778985	6.25140229652529	6.12695645382948	0.31038082722899	0.23618464495861	0.546185867511015
Merged-chr19-4121570-4	chr19	4121478	4121678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276284)	promoter-TSS (NM_001276284)	-3.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	7.40891796869337	7.78334961516104	6.71602828130477	6.66228060925406	7.43680270099541	7.59671575820771	7.25386077269275	7.20968678503149	0.207714381569317	0.46045182833145	0.742687499720882
Merged-chr18-25679320-5	chr18	25679230	25679430	+	931.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001146295, exon 2 of 2)	exon (NM_001146295, exon 2 of 2)	418.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	5.02590963163484	4.89652388758166	4.99685892886441	4.88668692681696	3.99729581675577	4.30706517696865	4.26715095955436	4.86603041998388	-1.22198621405764	0.0025557515328854	0.0281962188625282
Merged-chr4-62667398-4	chr4	62667314	62667514	+	739.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-6560.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	3.95655668920376	3.80566799286064	4.00965990597541	3.64119932453516	4.26974164109988	4.28346054729506	4.38464302042082	4.54568915029437	1.38147738698125	0.000829050191426589	0.0115775875172755
Merged-chr7-132852578-4	chr7	132852464	132852664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347629)	promoter-TSS (NM_001347629)	83.0	NM_028095	72096.0	Mm.28631	NM_028095	ENSMUSG00000030960	Eef1akmt2	2010208K18Rik|Mettl10	EEF1A lysine methyltransferase 2	protein-coding	5.50149598187866	5.73808419968423	6.06441520434406	5.76228953102955	5.61624977680651	5.76951534534194	6.01349440525694	6.29288524793511	0.261756281003025	0.362225557970732	0.667431754717646
Merged-chr3-86961232-2	chr3	86961160	86961360	+	739.5	f0_balb.idr|f1_balb.idr	Intergenic	RMER4B|LTR|ERVK	-25326.0	NM_001289449	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	3.03635204006747	3.47558394925549	2.97770027194242	2.72916868891604	2.70686777860304	3.02765829560961	2.62887687028811	2.63458475661467	-1.45871876646136	0.0411240876926663	0.205156394580621
Merged-chr5-38479171-3	chr5	38479094	38479294	+	834.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145559, intron 2 of 10)	intron (NM_145559, intron 2 of 10)	1112.0	NM_001102414	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	4.05079788323181	4.03087326821578	3.91353848282746	3.79555080073328	3.69097791012074	3.76231497202129	4.15481665432156	3.70146232437259	-0.300778573422655	0.514797800508281	0.777276037082053
Merged-chr9-5298614-4	chr9	5298527	5298727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009807, exon 1 of 10)	5' UTR (NM_009807, exon 1 of 10)	110.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	6.62214931157615	6.39710227444541	6.75729163770216	6.98088364889256	6.7962421303911	6.81523352713186	6.50880348350449	6.53753976079805	-0.0645067040869409	0.781412849839645	0.914880915186053
Merged-chr13-24813658-3	chr13	24813561	24813761	+	769.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_024473)	TTS (NM_024473)	12004.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	4.02245953711437	3.77427418608518	3.92853471430539	3.5914297575198	4.33187917799907	3.89297657960143	3.91178235751977	3.82432772307342	0.53290811259052	0.252727601843225	0.563984491060167
Merged-chr4-88432617-4	chr4	88432501	88432701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025760, intron 3 of 6)	intron (NM_025760, intron 3 of 6)	6325.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	5.78910673426579	6.15936086517544	5.86878686941432	6.45007750525849	6.31192698724414	6.50755831767216	6.41748386279644	6.17857368778287	0.359979217570963	0.175054128945806	0.469769938328816
Merged-chr6-21985920-4	chr6	21985814	21986014	+	880.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081351)	promoter-TSS (NM_001081351)	4.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	4.29862092604907	3.96164393474113	4.07800477071944	4.45976270232396	4.32018865020948	4.10015891284101	3.90890405699092	3.97530030660429	-0.333939063677011	0.448605781296749	0.733860881331733
Merged-chr13-60357207-1	chr13	60357107	60357307	+	655.0	f1_balb.idr	Intergenic	Intergenic	151736.0	NR_036449	100503759.0	Mm.38101	NM_177810	ENSMUSG00000050765	Gm5084	A030007L22|EG328264	predicted gene 5084	ncRNA	2.94427181515415	3.56557598891426	3.14709880376932	2.79812982193261	3.07387310873337	3.19628967991352	3.4620931056129	3.42626946343068	0.55093851401872	0.379279007811831	0.681869101180597
Merged-chr14-47276215-4	chr14	47276110	47276310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080843)	promoter-TSS (NM_080843)	647.0	NM_001360532	218973.0	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	5.8951470836977	5.67772541452778	5.89618712365758	5.96955489669611	5.76035689585906	5.47626470204466	5.54832535917655	5.67957989481935	-0.396143899306357	0.129248118973161	0.400110984229574
Merged-chr15-34443358-4	chr15	34443267	34443467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028101)	promoter-TSS (NR_028101)	-91.0	NM_001163485	19946.0	Mm.358632	NM_009083	ENSMUSG00000058600	Rpl30	-	ribosomal protein L30	protein-coding	7.89219253289159	7.7216830174174	7.90066174737921	7.93572612645373	7.77739019698032	7.57633097491101	8.11890447898125	7.78351506397477	-0.0477560268313867	0.794549967379279	0.920576505358097
Merged-chr12-31921227-4	chr12	31921103	31921303	+	970.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163126, intron 21 of 22)	intron (NM_001163126, intron 21 of 22)	29042.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	4.93136387889916	4.57623212848199	4.70344764004901	4.88159090287544	4.73849595949373	4.88084482242753	5.31768565931496	5.1808821136947	0.51208782216472	0.141854884475046	0.419040693203243
Merged-chr2-45107759-4	chr2	45107677	45107877	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	2500.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	4.43020202208835	4.24474410134674	4.5122977259965	4.26084791736912	4.51663336477656	4.64324738326398	4.52967045823829	4.19907338125906	0.292007546414625	0.441537720284126	0.728526235547338
Merged-chr4-55797453-4	chr4	55797358	55797558	+	960.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-264983.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.58542718580446	4.42850634715169	4.45343454809051	4.43184792743161	4.73099784389501	5.11936552073278	4.86103630847038	4.88168610105565	0.904858020159815	0.00823737738525056	0.0685123025128242
Merged-chr12-91660837-4	chr12	91660733	91660933	+	953.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-70346.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	4.52659246655829	4.58533451907932	4.96151812582223	4.73924574891343	4.65973323417227	4.65919935376913	4.77526611565895	4.3397368719716	-0.201997247892143	0.577990485432681	0.814391164493464
Merged-chr2-130697543-5	chr2	130697381	130697581	+	893.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081162)	promoter-TSS (NM_001081162)	38.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	4.00554686497774	4.16849819313459	4.23774348137377	4.1913988908498	3.78351055780364	3.90741008667359	4.03859760574629	4.50063372620834	-0.186788928255657	0.67682304020211	0.867294132510235
Merged-chr5-103614354-7	chr5	103614235	103614435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029415, intron 3 of 5)	intron (NM_029415, intron 3 of 5)	15068.0	NM_029415	75750.0	Mm.7446	NM_029415	ENSMUSG00000029321	Slc10a6	8430417G17Rik|C78479|Soat	solute carrier family 10 (sodium/bile acid cotransporter family), member 6	protein-coding	5.78237603763605	5.46727141768195	5.78340371319596	5.27466935535665	5.1447157076207	5.55546304114622	5.05615288610428	5.31563456123919	-0.538612434857649	0.0860917585144991	0.319728961666677
Merged-chr6-143168516-4	chr6	143168416	143168616	+	940.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029250, intron 1 of 7)	intron (NM_029250, intron 1 of 7)	1286.0	NM_029250	75320.0	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	4.72058034846212	4.25053080880205	4.7213585814218	4.54509191007448	5.17780793226111	4.65340007841699	4.62313551261984	4.47400189462526	0.442995309434604	0.258177238284163	0.569982247567646
Merged-chr8-13551215-4	chr8	13551101	13551301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025601, intron 8 of 8)	intron (NM_025601, intron 8 of 8)	11260.0	NM_025601	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	5.61008049596853	5.14939948601511	5.2450853486887	5.56850498795577	5.20276764101694	5.65559437836471	5.25130781978138	5.5054456297472	-0.0154062185487395	0.959900635867943	0.985662310124408
Merged-chr6-65143623-3	chr6	65143525	65143725	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 1 of 5)	intron (NM_019455, intron 1 of 5)	1105.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	3.90232755300943	3.66206959416699	3.90290995151223	3.87957298335352	3.82972699858386	3.70289741422821	3.83902456021778	3.69871593471762	-0.200776468479165	0.656007344759348	0.856430271691361
Merged-chr11-76493942-3	chr11	76493825	76494025	+	790.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198018, intron 1 of 21)	intron (NM_198018, intron 1 of 21)	570.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	3.68789697522419	4.1218012463465	3.63769718550731	3.5035977330448	3.59704409729456	3.58949774560316	3.13282778106352	3.21284045721392	-1.14680523934628	0.0473439612262123	0.224032430269949
Merged-chr19-3880602-4	chr19	3880498	3880698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 3 of 11)	intron (NM_001271496, intron 3 of 11)	24632.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	6.82563550530923	6.81334073165326	6.71393064340285	6.97267652525226	6.87450494635902	6.51678101778532	6.40106005757457	6.66407460624423	-0.291348318200418	0.180659418003572	0.47704412057244
Merged-chr11-115139044-4	chr11	115138960	115139160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	MLT1H|LTR|ERVL-MaLR	-5068.0	NM_145634	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	7.75156633500366	7.94042222997397	7.72099776836789	7.61500294406797	7.63966314784094	7.63949442879716	7.74614578748951	7.72378171041357	-0.0924146811552148	0.589325394966923	0.820451993036494
Merged-chr1-80641985-4	chr1	80641870	80642070	+	967.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	23382.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	4.71265132542984	4.90550634602683	4.27589312506461	4.40078886962163	4.58900241032263	4.92098510131854	4.57560112279227	4.6726717187071	0.216577525416581	0.568598403839032	0.808846769128014
Merged-chr2-156200042-3	chr2	156199941	156200141	+	842.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 1 of 17)	intron (NM_172674, intron 1 of 17)	3394.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	3.62098927841106	3.64976424251005	3.62146737359791	3.0841188476126	4.46039744374518	4.13028741490918	4.0744303886509	4.33125762394309	2.23448861647964	5.24826786245128e-06	0.000154749982676645
Merged-chr11-75588807-2	chr11	75588707	75588907	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008850, intron 1 of 11)	intron (NM_008850, intron 1 of 11)	728.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	3.53533817816676	3.71174239473101	3.64350195233478	3.25639132153573	3.65587388719378	3.40489968178198	3.34429138908217	3.99811695935217	0.275396247097519	0.609142979853486	0.83089280248568
Merged-chr8-83201152-4	chr8	83201050	83201250	+	882.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111304, intron 1 of 20)	(TTTTTA)n|Simple_repeat|Simple_repeat	35798.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	4.20103121945786	3.81986257645727	4.25489544217983	3.85609895102907	5.29917995577937	4.90871471919275	4.63522308074432	5.23373536070482	2.27298294002948	7.41231800437334e-09	4.03673590844139e-07
Merged-chr2-122454192-4	chr2	122454105	122454305	+	853.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356532, intron 10 of 17)	intron (NM_001356532, intron 10 of 17)	13385.0	NM_001356532	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	4.38120779604024	4.24080669958923	4.73588237895115	5.10861331024796	4.24122146953585	4.0221183443992	4.3622600891517	4.76644158349233	-0.666395709170954	0.144122883138187	0.422874920602374
Merged-chr18-46526036-4	chr18	46525920	46526120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173423)	promoter-TSS (NM_173423)	-49.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	8.81395328900782	8.90362039002132	8.92390844239259	8.71503028005142	9.06113689257004	9.19516909195559	8.9348687640336	8.82187334401282	0.214302701387386	0.167033960312505	0.458497946900768
Merged-chr6-43260943-4	chr6	43260898	43261098	+	829.016663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-4646.0	NM_133674	54324.0	Mm.320978	NM_133674	ENSMUSG00000033542	Arhgef5	2210412D05Rik|AA717842|AW495314|Tim1	Rho guanine nucleotide exchange factor (GEF) 5	protein-coding	3.75288088177647	3.67765893101161	3.44801852552572	3.61095668154983	3.62411395223955	3.44037945877129	3.37728334594881	3.26171488808173	-0.613276457355301	0.234763272049443	0.544671297409607
Merged-chr9-40781394-4	chr9	40781305	40781505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 6 of 6)	intron (NM_133733, intron 6 of 6)	-19868.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	6.95449413776277	6.62861442564918	5.95932853083074	6.33105319719032	6.59178230011285	6.56147945161526	6.29689735341828	6.3802199279687	-0.0721264708849735	0.790370544764756	0.918829338045187
Merged-chr1-12983365-4	chr1	12983244	12983444	+	987.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172841, intron 1 of 8)	intron (NM_172841, intron 1 of 8)	7791.0	NM_172841	240726.0	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding	5.00109360945755	4.96705503258499	5.60174257983647	5.45189484668424	5.2185777016335	5.1045281582523	4.97799080288129	5.10363916970285	-0.341218115309675	0.3000945382915	0.612248910735458
Merged-chr6-3201482-4	chr6	3201378	3201578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SSU-rRNA_Hsa|rRNA|rRNA	-87041.0	NR_036696	667335.0	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	5.85865207617689	5.7604813261263	5.88202306155791	5.73597359368332	5.4163343966847	5.89170886160192	5.5831694474452	5.92130052487976	-0.160063790807363	0.553394153182157	0.800173960261692
Merged-chr17-70829369-4	chr17	70829287	70829487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17390.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	7.25312524263254	7.11413258676572	7.15640061776892	7.22891656769666	6.9649551660946	6.92287512772904	7.27919930080977	7.10526812170905	-0.160819627763819	0.397796969249612	0.696054529321669
Merged-chr16-16560297-3	chr16	16560197	16560397	+	926.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139232)	promoter-TSS (NM_139232)	-78.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	3.51666961209883	3.72270273396928	3.46581696725211	3.61351733160047	3.18398205747164	3.34694544989268	3.09902753365004	3.23539502693204	-1.39082220552345	0.0107135579943581	0.0830607062934775
Merged-chr5-102070651-4	chr5	102070541	102070741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172882)	promoter-TSS (NM_172882)	-720.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	7.53395147834877	7.34602177426465	7.62193668300142	7.64771846277289	7.3304233083123	7.42088870865632	7.59287090375611	7.42720870457671	-0.137674920553749	0.445892530233035	0.731725012715843
Merged-chr2-32502064-4	chr2	32501969	32502169	+	824.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33290.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	3.96229068166975	3.80653994980252	3.69046038736209	3.89460424886076	3.97735155898178	3.81092134699748	4.03962779043998	4.50937619164066	0.71015264251073	0.120753644516112	0.384724213912194
Merged-chr15-36167893-4	chr15	36167813	36168013	+	820.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3029.0	NM_001081253	78803.0	Mm.26393	NM_175281	ENSMUSG00000048230	Fbxo43	4930533G20Rik|Emi2	F-box protein 43	protein-coding	3.80857808780986	3.79225102321522	3.85857571648383	3.84196789568334	3.78141386976468	3.92831840687963	3.74270479549334	3.70219451332117	-0.107729714336844	0.808087546408922	0.925959677004648
Merged-chr4-134730146-4	chr4	134730064	134730264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-25874.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	6.2087983369286	6.27694773392491	6.70287129276508	6.56547760457692	6.14971155711147	5.99251167833534	6.44733427368204	6.39204752835959	-0.301575749669974	0.220974418194465	0.529040790359911
Merged-chr5-32197898-4	chr5	32197805	32198005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34803.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	6.84010843154141	6.76052939872807	6.34459685966457	6.55291759828484	6.42851451870569	6.65255946448858	7.03466367415792	6.84960583038907	0.169820626152245	0.47641134095929	0.75294719537583
Merged-chr8-84601646-3	chr8	84601557	84601757	+	669.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 32 of 47)	intron (NM_001252060, intron 32 of 47)	61195.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	2.46200826295606	2.39903517049845	2.37661474123064	2.04843501645735	3.09987597412268	3.07146092423864	2.75179620404899	3.43648030198838	5.74824494420255	3.61238815119316e-09	2.09045671718518e-07
Merged-chr10-80249163-4	chr10	80249117	80249317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029272)	promoter-TSS (NM_029272)	-235.0	NM_029272	75406.0	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	6.58935111610057	6.91155804523515	6.55741734158758	6.58627161457621	6.67418715210659	7.01743967440763	6.3059278976237	7.16388890628653	0.225207404626124	0.371664729912665	0.675648274485467
Merged-chr1-170934595-4	chr1	170934498	170934698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7015.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	6.86207194530209	6.62857017940302	6.80762851319731	7.26698497043205	6.71124568260027	6.8500979609935	6.82844691214961	7.13758433993778	-0.058491347784526	0.802704025837911	0.923936032101707
Merged-chr1-189921906-1	chr1	189921806	189922006	+	1000.0	f1_balb.idr	intron (NM_026796, intron 1 of 11)	CpG	385.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	3.47372321772654	3.77900104128	3.87084714412276	3.91888204054829	3.24829793782844	3.33194459196856	3.34126265193934	3.52908851057061	-1.40762042210963	0.0075922423972599	0.0647272992687223
Merged-chr13-21779449-4	chr13	21779338	21779538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020034)	TTS (NM_020034)	1187.0	NM_020034	56702.0	Mm.221314	NM_020034	ENSMUSG00000058773	Hist1h1b	H1.5|H1B|H1f5|H1s-3	histone cluster 1, H1b	protein-coding	7.67564611041949	7.93688540357111	7.94107517993893	7.8773699424134	8.26001278368538	8.09709883143276	7.85287785692142	7.95666563784627	0.249248324231407	0.157347018994252	0.443883818312874
Merged-chr11-4986857-4	chr11	4986765	4986965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007454)	promoter-TSS (NM_007454)	41.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	6.45642974830709	6.61580602258307	5.95924785924197	5.96783369641947	6.62206366453955	6.18572756810488	6.53418249590033	6.23810397542631	0.209304104443233	0.437986174960142	0.726158062691883
Merged-chr15-36505685-2	chr15	36505585	36505785	+	779.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347022, intron 13 of 13)	intron (NM_001347022, intron 13 of 13)	-8894.0	NM_175134	68839.0	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	3.64859928980949	3.31304766755804	3.36378813406755	3.54222105454764	3.68630352179521	3.54146437542868	3.98424857512316	3.5403967568616	0.707875716016627	0.160313961422439	0.448421718084167
Merged-chr3-40523003-4	chr3	40522861	40523061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040445)	promoter-TSS (NR_040445)	-49.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	5.29140533632193	5.41432473315638	5.55577680604241	5.55844816871592	5.27530839519491	5.75519491092168	5.72184304063527	5.4415459031242	0.148295792549443	0.607442601111905	0.829999364685165
Merged-chr7-75370691-1	chr7	75370591	75370791	+	710.666687	f0_balb.idr	Intergenic	Intergenic	-61429.0	NM_153579	64176.0	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	3.15522374445505	3.3984717404553	3.2087817435335	3.07769198414385	2.68951820872428	2.73574444492918	2.773447834968	2.85019983920552	-2.16271765841785	0.00137959546636171	0.017466777961608
Merged-chr4-129504808-3	chr4	129504703	129504903	+	726.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8778.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	4.2655425370647	4.73043880719347	3.63700606249805	3.68756173081994	4.14177535572791	4.11421247337737	4.06975271227996	3.9861263979768	-0.20905054026757	0.687556339178321	0.872378699555673
Merged-chr7-45277436-4	chr7	45277347	45277547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5426.0	NM_001033176	76713.0	Mm.425445	NM_001033176	ENSMUSG00000070568	Slc6a21	1700039E15Rik|Gm19188	solute carrier family 6 member 21	protein-coding	5.74603919197912	6.17784804981368	5.46644315818256	5.82009882124268	5.9009834739395	5.79155877731643	5.76702708638928	5.97248853366587	0.0465343032750727	0.864835666858264	0.949284607738754
Merged-chr5-115237953-4	chr5	115237843	115238043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026398, exon 2 of 6)	5' UTR (NM_026398, exon 2 of 6)	2092.0	NM_026398	117109.0	Mm.24636	NM_026398	ENSMUSG00000060152	Pop5	1500019J17Rik|2700077E03Rik|AW049989|Rnasep3	processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)	protein-coding	6.57594451041895	7.00922274738176	6.23033795693887	6.37849840389479	6.70016797599209	6.60173627146931	6.76157694647899	6.40186815625765	0.0639854058729492	0.799619475790097	0.922629879999082
Merged-chr4-45890259-4	chr4	45890154	45890354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198660)	promoter-TSS (NM_198660)	-49.0	NM_198660	381522.0	Mm.54220	NM_198660	ENSMUSG00000035539	Ccdc180	E230008N13Rik|Gm1025	coiled-coil domain containing 180	protein-coding	6.79769658349828	6.76383232559198	6.37144999719299	6.85562963686767	6.75181599948549	6.67918087227106	7.08128700760824	6.82161902302772	0.170814602646657	0.440034345519915	0.727527589166698
Merged-chr17-47629507-4	chr17	47629393	47629593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1197.0	NM_198421	224836.0	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	6.53896342954782	7.04665735822513	6.24580152816653	6.13095946164825	6.92034664854773	6.82612782300105	6.40457292754247	6.43297620640675	0.19109736754884	0.501106404094235	0.769095113768232
Merged-chr11-119355923-2	chr11	119355835	119356035	+	943.0	f0_c57.idr|f1_balb.idr	promoter-TSS (NM_018822)	promoter-TSS (NM_018822)	378.0	NM_178743	268512.0	Mm.31869	NM_178743	ENSMUSG00000039908	Slc26a11	F630021I08Rik	solute carrier family 26, member 11	protein-coding	3.54341231882358	3.60957951402608	3.4847998767525	3.69393486789559	3.81200511968349	3.33179398171325	3.74057141266808	4.05678188319324	0.519212466525	0.30711257287876	0.619340215249893
Merged-chr16-8829895-4	chr16	8829790	8829990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081400)	promoter-TSS (NM_001081400)	-210.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	9.25071891121218	9.43435771736767	9.40120663656761	9.33030535814862	9.38681506517092	9.62206813297664	9.47910063469093	9.27658139330243	0.11071406646893	0.448396257671305	0.73368496417573
Merged-chr15-43282726-4	chr15	43282626	43282826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008388)	promoter-TSS (NM_008388)	10.0	NM_008388	16341.0	Mm.289992	NM_008388	ENSMUSG00000022336	Eif3e	48kDa|Eif3s6|Int6|eIF3-p46|eIF3-p48	eukaryotic translation initiation factor 3, subunit E	protein-coding	7.63531322925847	7.53344102171161	7.09754333089885	7.78664747388068	7.69511970418178	7.38703652641905	7.68045775671364	7.83309682474384	0.148896922601116	0.481718446221202	0.756755039529514
Merged-chr1-37344661-3	chr1	37344489	37344689	+	963.875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	-24628.0	NM_172971	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	3.04069465328519	3.09331631730777	3.82305511471521	3.27518948792136	2.82090142302338	2.79108558321248	2.75339062946694	2.90658612303164	-2.29489555294101	0.00110414825592941	0.0145411092949457
Merged-chr2-4503295-2	chr2	4503195	4503395	+	994.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	B3A|SINE|B2	-56459.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	2.90755689025704	2.8730638241396	2.6981142817068	2.92027010899009	2.94714258760935	3.01691514365095	3.07669220080608	3.3409286841953	1.01462735336785	0.0945448831178053	0.336411320886142
Merged-chr3-121370575-4	chr3	121370470	121370670	+	983.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55971.0	NM_028044	71994.0	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	4.8261520001065	4.80807753438202	4.78861513410246	4.90594545083984	5.20549141421203	5.03740520464925	4.94560550444305	4.74604426227944	0.327694598318245	0.315144036878778	0.627038475150038
Merged-chr5-99345491-4	chr5	99345340	99345540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-92513.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.12377009705529	6.98483268326373	7.5127171265954	7.30724791976427	6.85708060512924	6.62908455261133	7.0777475659813	6.64170561608785	-0.593836407636494	0.00703429866065822	0.0610602858984136
Merged-chr13-41501030-3	chr13	41500924	41501124	+	753.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13664.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	3.83388458162747	4.20920449063217	3.61882734626161	3.57573452328413	3.61343140696198	4.14399773474222	3.54594242594796	3.61689669183191	-0.239969255368864	0.64504872155201	0.850620133600432
Merged-chr4-150799680-4	chr4	150799564	150799764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54132.0	NM_001356323	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	6.70174410676254	6.63498277763791	6.94856257065958	6.66659801747135	6.86193461482097	6.92351622870231	6.75584301053477	6.77136370106007	0.133197291685285	0.508316087824797	0.773421491957872
Merged-chr15-99033665-4	chr15	99033550	99033750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009448, intron 1 of 3)	(T)n|Simple_repeat|Simple_repeat	3759.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	7.57142973304907	7.55199104503876	7.99197649294465	7.52355495106448	7.44649509464666	7.66734005011086	7.49948565777102	7.56751353179631	-0.163030396205215	0.392298100921926	0.691858576902415
Merged-chr4-117892019-4	chr4	117891902	117892102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026344)	promoter-TSS (NM_026344)	1.0	NM_026344	67728.0	Mm.13823	NM_026344	ENSMUSG00000028540	Dph2	9130020C19Rik|AI467389|Dph2l2	DPH2 homolog	protein-coding	6.0120391859475	5.92091230794042	6.07734669542745	6.10030180850166	6.21399542075117	6.18881677610405	6.30763407052197	5.8940274047707	0.199406653480929	0.401634983114724	0.699189596811911
Merged-chr6-7857042-3	chr6	7856946	7857146	+	659.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_052993, intron 1 of 3)	RMER20C_Mm|LTR|ERVK	11822.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	3.67579488689662	3.66426470506324	3.57126191028131	3.76354391344843	3.57862995070325	3.50897751898826	3.66123146188715	3.51352719631048	-0.348077841356616	0.465237014706599	0.745807997310006
Merged-chr10-24727698-4	chr10	24727598	24727798	+	808.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15539.0	NM_008813	18605.0	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	4.42576321238897	3.9254796673571	4.03650806011317	4.53314180707226	3.87196506952422	4.16099781444337	4.32926343563817	3.92895202078047	-0.469792565065931	0.301842270537815	0.61407316386386
Merged-chr16-92821203-4	chr16	92821050	92821250	+	991.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	MLT1C|LTR|ERVL-MaLR	4924.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	3.95983009819886	4.24985827277987	3.70115102123647	3.86365497744978	3.90691372109762	3.82006379656161	3.62940112212825	3.95802397901418	-0.341706084628704	0.463336140008898	0.744649983284639
Merged-chr3-106721707-4	chr3	106721616	106721816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039488)	promoter-TSS (NM_001039488)	34.0	NM_001286685	321000.0	Mm.259638	NM_028081	ENSMUSG00000056260	Lrif1	2010012G17Rik|4933421E11Rik|AI450568	ligand dependent nuclear receptor interacting factor 1	protein-coding	8.58133605931457	8.78542400050124	8.58269551401127	8.41736904091809	8.68035404259456	8.8947796199179	8.88321993948194	8.62349126376842	0.224661473158215	0.167776958589885	0.459695448875569
Merged-chr18-58134023-4	chr18	58133906	58134106	+	831.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010181, intron 7 of 64)	L1MB8|LINE|L1	75920.0	NM_010181	14119.0	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	4.24876410234047	3.82667395248236	3.75930421909153	4.2839854319509	4.15075678287303	3.99449018206266	4.18894575064073	4.02512899539634	0.0784235240514913	0.861074796147032	0.947524195989914
Merged-chr2-11532373-3	chr2	11532265	11532465	+	689.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	21564.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	3.36172628710059	3.39037744897037	3.4188663051301	3.37702377036738	3.54572106010459	3.35294444938665	3.09846180551513	3.71199458761159	0.219498250464492	0.682698754717769	0.86997749614016
Merged-chr11-100761838-4	chr11	100761728	100761928	+	957.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010410, exon 2 of 2)	exon (NM_010410, exon 2 of 2)	1103.0	NM_010410	15171.0	Mm.10096	NM_010410	ENSMUSG00000045471	Hcrt	PPOX	hypocretin	protein-coding	4.20757786866537	4.25135028807147	3.98684627409363	4.04653203842498	4.7255625779281	4.91527542411857	4.42135111995938	4.92953010466476	1.45470275342798	0.000137360010773835	0.0026532288214032
Merged-chr12-76950504-4	chr12	76950402	76950602	+	947.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	11746.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	4.92017802028245	4.73539589600703	4.80911934982749	4.92547253722331	5.15736450677639	5.28945536061535	4.82459305737373	4.91769494017574	0.407385896206942	0.21081633496293	0.515470506828542
Merged-chr6-136965309-4	chr6	136965212	136965412	+	992.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10789.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	5.32448873193509	5.62882361667548	5.32539883039223	5.37714997130014	5.76999455335938	5.6177186342369	5.38814426101617	5.04661681688696	0.128330162955081	0.677545395437747	0.867751114703265
Merged-chr2-83714958-4	chr2	83714872	83715072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9425.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	5.85857567413234	5.4057844527623	5.69680531317752	5.32379101578972	5.69342044244714	5.76864194283208	5.59163180451426	5.85542032147266	0.268501158664187	0.339596753909435	0.648777640950122
Merged-chr19-4302420-4	chr19	4302308	4302508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	3814.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	6.77112061029188	6.70480677528082	7.22020768596664	6.92005330995442	6.80457475829882	6.77877090496725	6.73787819548855	6.98099749111556	-0.124854712263926	0.557668107794765	0.802816324871987
Merged-chr11-100527210-3	chr11	100527154	100527354	+	949.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134037, intron 1 of 27)	CpG	746.0	NM_134037	104112.0	Mm.282039	NM_134037	ENSMUSG00000020917	Acly	A730098H14Rik|AW538652	ATP citrate lyase	protein-coding	4.00518328336159	3.67092026383396	4.00580985497898	3.8580687562441	3.61506720283369	3.98801825513819	3.74954390820847	3.65218406254355	-0.394812466845246	0.395957455769207	0.695005320186338
Merged-chr10-15189447-3	chr10	15189347	15189547	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	429158.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	5.37967320607197	4.80416935211554	5.25018523640945	5.9319719203279	4.19925852831993	4.28720847303416	4.64601654596762	4.26842338459301	-2.20191340884223	1.68583017415931e-07	6.89630494060263e-06
Merged-chr11-51817952-4	chr11	51817874	51818074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 12 of 12)	intron (NM_001357588, intron 12 of 12)	39507.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	6.30752207494008	6.46299255625155	6.2122050696302	6.26161377614907	6.37894850994545	6.52041787629353	6.25780364274548	6.37635544919626	0.107334907151586	0.624841726127013	0.839659374707287
Merged-chr6-135161489-4	chr6	135161381	135161581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013546, intron 1 of 3)	MIR3|SINE|MIR	6734.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	6.26397458662514	6.37050524669736	6.64281878350829	6.66084037364106	6.31709885518244	6.60973069171152	6.66660907013983	6.48035304774084	0.0176521275576671	0.938621237799811	0.977759950372676
Merged-chr9-58581533-4	chr9	58581503	58581703	+	874.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009145)	promoter-TSS (NM_009145)	-637.0	NM_001293673	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	3.69953959072377	3.78265534575038	4.21309521034441	4.24653167707548	4.03907987154353	3.99814087989682	4.10714899223764	4.44127231976807	0.352028523577855	0.448022939863611	0.73332468018769
Merged-chr5-3501287-4	chr5	3501192	3501392	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-42541.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	4.35691825766555	4.67161227583532	4.21499464605844	4.22097331271043	4.47000601643648	4.65756683468769	4.29290939417675	4.63622838877743	0.332116697155401	0.391823568010625	0.691520541707427
Merged-chr12-84101062-3	chr12	84101043	84101243	+	892.5238039999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172580, exon 1 of 3)	exon (NM_172580, exon 1 of 3)	489.0	NM_172580	217700.0	Mm.49245	NM_172580	ENSMUSG00000043487	Acot6	4632408A20Rik|A330054B07|BE688602	acyl-CoA thioesterase 6	protein-coding	2.83735236002707	3.22416928774122	2.69584008388714	2.38692900181079	2.73286022384389	3.08011671344379	2.89261959325915	3.23926053983075	0.720300757053262	0.319668512807059	0.631524558708573
Merged-chr4-147922365-4	chr4	147922273	147922473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011122, intron 10 of 18)	MER58B|DNA|hAT-Charlie	14403.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	5.51322639515787	5.18132294909307	5.14901354085567	5.51200917126016	5.57601483263972	5.54872021143942	5.48642627766594	5.31037847589872	0.219849537452711	0.448947764389074	0.734140160849337
Merged-chr16-55973764-4	chr16	55973673	55973873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173026)	promoter-TSS (NM_173026)	-31.0	NM_173026	271377.0	Mm.282814	NM_173026	ENSMUSG00000022601	Zbtb11	9230110G02Rik|ZNF-U69274	zinc finger and BTB domain containing 11	protein-coding	8.78761581643148	9.11713232015359	8.84233331442915	9.02414822984615	9.04981669168071	9.23075182130565	9.10077546271277	8.96999125192207	0.169441520504503	0.272936520462044	0.584374944029057
Merged-chr6-85333258-8	chr6	85333119	85333319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178639, intron 1 of 13)	CpG	203.0	NM_178639	94282.0	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding	6.6154060371583	6.74753527064737	6.93353068901101	6.64847388562208	6.73759982675653	7.08334240363489	6.9111023045849	7.18038334487826	0.345784119611523	0.102772481407458	0.352117566984426
Merged-chr9-61257729-4	chr9	61257619	61257819	+	984.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	36090.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	5.8169776597158	5.97118405905233	5.37619211956344	5.08140953587522	5.80737868836885	5.69832250904926	5.43871998867806	5.20718365329908	-0.062315570516767	0.85562840041915	0.945715901857588
Merged-chr14-60269346-4	chr14	60269296	60269496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144843, intron 1 of 13)	intron (NM_144843, intron 1 of 13)	4191.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	6.68434068441023	7.045989896478	6.53585267870313	5.75245748583632	6.62340771323037	6.61337519556424	5.9071715022859	6.09983920885622	-0.336712910557439	0.310869649745866	0.622973360715701
Merged-chr14-103071153-4	chr14	103071036	103071236	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033242, intron 1 of 3)	intron (NM_001033242, intron 1 of 3)	920.0	NM_001033242	211286.0	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	5.16318430116166	5.2243523987789	5.37353050070702	5.37975800579703	5.30949328131225	5.12920859887776	5.03861464486781	5.19266752102757	-0.215210163117071	0.466387181047273	0.746420287776482
Merged-chr19-55741745-4	chr19	55741650	55741850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331147)	promoter-TSS (NM_001331147)	-60.0	NM_001331147	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	7.64021312061965	7.93053259347097	7.75018217911306	7.60988552878511	8.02803114511647	8.01268387526924	7.84851596698158	7.65362016914595	0.210348629653208	0.245915164195498	0.557114977315362
Merged-chr14-104005442-4	chr14	104005322	104005522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045953, intron 1 of 2)	intron (NR_045953, intron 1 of 2)	21720.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	6.71990639537861	6.85695153155655	7.50903003473249	7.32573877578711	7.01904662758426	6.81969264757087	6.63982369709079	6.66911528775508	-0.4813114581782	0.0516728470358775	0.236331143042262
Merged-chr11-79225089-4	chr11	79225000	79225200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17924.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	5.83072067312108	6.50987994185904	5.61688079470213	5.66387986107394	6.09028232444929	6.25333045859848	6.25196248269895	5.64179403793671	0.192280807691132	0.542641660293911	0.793917205662524
Merged-chr6-4086938-4	chr6	4086855	4087055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009748)	promoter-TSS (NM_009748)	-25.0	NM_009748	12068.0	Mm.286457	NM_009748	ENSMUSG00000032757	Bet1	AW555236|Bet-1	Bet1 golgi vesicular membrane trafficking protein	protein-coding	8.21723803201634	8.20956014936847	8.03363155894413	8.29987854297747	8.3433495593042	8.33550406366943	8.45942366983592	8.20125485796071	0.177228444374558	0.264421256970382	0.576455127446606
Merged-chr11-32532844-3	chr11	32532747	32532947	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359177)	promoter-TSS (NM_001359177)	-419.0	NM_001359178	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	6.86178122376037	6.97491781232199	6.14833651841811	6.18628337232742	6.49306083331437	6.65043939685595	6.33569788562127	6.09954813326978	-0.265879354845631	0.354515600100146	0.661183437692343
Merged-chr7-133047466-4	chr7	133047382	133047582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	-32235.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	5.79644352078872	5.80397869170961	5.94271181193592	6.14241166810963	6.0081294144339	5.94966481735753	6.64713528836087	5.89190816639722	0.346049837637007	0.222873060214702	0.531026362489867
Merged-chr2-167843645-2	chr2	167843545	167843745	+	565.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-88682.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	2.83073421738244	3.00471102543098	2.88932406466873	2.45718029143249	2.652772659051	2.59875828130237	2.5611726290796	2.76873174897029	-0.77703874901803	0.268298725409834	0.580085950152971
Merged-chr15-81917785-2	chr15	81917685	81917885	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030229, intron 4 of 5)	intron (NM_030229, intron 4 of 5)	8428.0	NM_030229	78929.0	Mm.215115	NM_030229	ENSMUSG00000022476	Polr3h	5031409G22Rik|RPC8	polymerase (RNA) III (DNA directed) polypeptide H	protein-coding	2.99335836592696	3.12548952981443	3.18722722971395	2.75039619134584	3.12345561772366	3.47326554512953	3.23289429139566	3.5030424076263	1.25563288789847	0.0318329366636155	0.174156226492345
Merged-chr4-89486102-4	chr4	89486010	89486210	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132431, intron 7 of 9)	intron (NR_132431, intron 7 of 9)	-175078.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	4.99194593723858	5.4643654884812	5.62505586658487	6.09641633108748	4.9754929739023	4.92312964267617	5.18158498934475	5.29889014535703	-0.93334997868501	0.00929278947549338	0.0748949018198259
Merged-chr8-95853505-4	chr8	95853409	95853609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172758)	promoter-TSS (NM_172758)	-18.0	NM_172758	234595.0	Mm.29267	NM_172758	ENSMUSG00000036534	Slc38a7	D430050E18	solute carrier family 38, member 7	protein-coding	6.35406311219488	6.36308755262221	6.01364817018657	6.39534376956412	6.55996871553933	6.07172107879652	6.15429002133509	6.27825623813344	-0.00788761421192363	0.974305758010406	0.990857401763433
Merged-chr13-46906141-4	chr13	46906053	46906253	+	981.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010617, intron 2 of 37)	intron (NM_010617, intron 2 of 37)	23565.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	4.71698045764793	4.76463314372858	5.02459250548318	4.43768564937656	5.50872947364559	5.05757745922569	5.29985459825122	5.2960631725146	1.12069032420907	0.000755502720892696	0.0107551856340842
Merged-chr4-116074293-2	chr4	116074193	116074393	+	972.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153521)	promoter-TSS (NM_153521)	777.0	NM_025641	66576.0	Mm.181721	NM_025641	ENSMUSG00000063882	Uqcrh	2210416J04Rik|2310021J10Rik|2610041P16Rik	ubiquinol-cytochrome c reductase hinge protein	protein-coding	3.135011823935	2.91946800941732	3.07220612110783	3.01844550602917	3.2565376661032	3.18359359217853	3.53634128119157	3.35942911898692	1.15535426109325	0.0356138015121108	0.187385776007579
Merged-chr4-132008846-4	chr4	132008759	132008959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	B3A|SINE|B2	40219.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	4.65704665230166	4.90004493090985	4.56582529583218	4.90695893977152	4.95726489037288	5.18045039280491	5.35791618606033	5.30395730655633	0.81492802533781	0.0144941470321489	0.102369407779453
Merged-chr9-20898009-2	chr9	20897909	20898109	+	916.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_016876, intron 3 of 10)	intron (NM_016876, intron 3 of 10)	581.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	3.02235950852665	3.15073403391321	3.08873643817859	3.1531730480448	3.18003787208502	3.59268442757585	3.14043402177384	3.32225270724182	0.771804922020156	0.16520802567067	0.455788451907465
Merged-chr5-38260486-4	chr5	38260350	38260550	+	978.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001356960, exon 1 of 5)	exon (NM_001356960, exon 1 of 5)	265.0	NM_025480	66309.0	Mm.256185	NM_025480	ENSMUSG00000067365	Tmem128	2810021O14Rik	transmembrane protein 128	protein-coding	4.9063294665117	5.36761474814753	5.7920010464279	5.17127359973593	5.14969716185043	5.45070744013779	5.62883203958233	5.67713157420088	0.252682946756629	0.452807100066099	0.73705030775748
Merged-chr2-71873922-7	chr2	71873821	71874021	+	984.6904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360002)	promoter-TSS (NM_001360002)	697.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	3.69129484023571	3.69726593636389	3.57596673160813	3.61432983628477	3.87294838156282	4.06568967545806	3.78245536072228	4.0285609076414	0.860021912140585	0.0536081312849242	0.241668399607207
Merged-chr19-4839390-4	chr19	4839291	4839491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207268)	promoter-TSS (NM_207268)	25.0	NM_207268	399599.0	Mm.444704	NM_207268	ENSMUSG00000067872	Ccdc87	4931419P11Rik	coiled-coil domain containing 87	protein-coding	7.83166804036573	8.08192090035992	7.38625529074293	7.63963114793377	7.90653287057278	7.68427056127203	7.80961240868552	7.31638673932072	-0.0757103838720852	0.730558718251373	0.893140720112921
Merged-chr5-115513899-4	chr5	115513767	115513967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	7191.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	7.19974216403813	7.0985358875039	7.30659140937328	7.3474897605039	7.04901052182991	6.82022968834789	7.2497990728534	7.27075960858526	-0.184878544333993	0.351284040805005	0.658729299237564
Merged-chr7-44869929-4	chr7	44869847	44870047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133949)	promoter-TSS (NM_133949)	-159.0	NM_133949	84113.0	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	7.63737375292096	8.09681852200023	8.07476280732022	7.8149328753206	7.8283268620535	7.85970144773717	8.00471116225989	7.6422537257637	-0.101333925698634	0.58781148214912	0.819357070175615
Merged-chr11-17953891-4	chr11	17953792	17953992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131916)	promoter-TSS (NR_131916)	-17.0	NM_026576	68145.0	Mm.178684	NM_026576	ENSMUSG00000016984	Etaa1	5730466H23Rik|AA672646	Ewing tumor-associated antigen 1	protein-coding	7.78816611388299	7.59910921201868	7.58116495749736	7.96856694492056	7.50878005019274	7.68414887555182	8.1313147138598	7.69680972828771	0.0289839930248612	0.888283777021824	0.958115954740013
Merged-chr19-41090058-2	chr19	41089958	41090158	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011904, intron 18 of 20)	intron (NM_011904, intron 18 of 20)	-12945.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	2.87488581855131	2.90569483835708	2.875192396677	2.85002618251655	3.04362889898803	3.23479357601762	3.16469139526883	3.17606458557168	1.15464951641001	0.0419569093697475	0.207522121605813
Merged-chr4-86575022-1	chr4	86574922	86575122	+	696.0	f0_balb.idr	promoter-TSS (NM_178376)	promoter-TSS (NM_178376)	-651.0	NM_178376	68441.0	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	3.3739329052252	3.64281542616321	3.25398740912147	3.44718013461645	3.44915432432929	3.42779252601585	3.36192527129724	3.42876638185369	-0.0772243318699845	0.880358493121521	0.95517036814656
Merged-chr11-106392001-4	chr11	106391892	106392092	+	996.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9211.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	4.54579694850451	4.30517672683034	3.84695173394786	3.54291165809372	4.67152510852379	3.70320539567742	4.45053379464566	4.64694939277891	0.703801005281688	0.191504148309245	0.490909128552014
Merged-chr2-29194852-4	chr2	29194850	29195050	+	865.7261960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001305805, exon 8 of 8)	exon (NM_001305805, exon 8 of 8)	53149.0	NM_001305805	171171.0	Mm.442448	NM_133500	ENSMUSG00000035513	Ntng2	2610016D08Rik|Lmnt2	netrin G2	protein-coding	3.07451856548292	3.25197403031578	3.38107657210529	2.75547029027134	3.65393223345245	3.38225533401584	3.25439692988141	3.48385829675119	1.19134633035607	0.0449861835879604	0.216795637211065
Merged-chr8-117295022-4	chr8	117294920	117295120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	MTE2b|LTR|ERVL-MaLR	38001.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	5.82894976290149	5.71393024338404	5.76049096476256	5.9238897556698	5.43558220798422	5.61395183524123	5.68300847809188	5.52172718294728	-0.431474283732572	0.0970627855743508	0.341353541181752
Merged-chr4-37412971-4	chr4	37412870	37413070	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163567.0	NR_151605	102636890.0	Mm.109154	NR_151605	ENSMUSG00000086026	Gm12374	-	predicted gene 12374	ncRNA	5.66843533193475	5.37987368750738	5.62236707118111	5.73148473775347	5.26891158957545	4.99534299579624	5.23789374485717	5.0534640369502	-0.822952473007344	0.00513050671162202	0.0484017200808787
Merged-chr2-6380101-4	chr2	6379997	6380197	+	916.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181399, intron 1 of 13)	intron (NM_181399, intron 1 of 13)	27361.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	4.77389856369679	4.56190870824372	4.96881145441081	4.79539426317027	4.35900731284732	4.49580208316936	4.24774553065678	4.69951642587758	-0.71457934295829	0.0536769583865329	0.241829575780222
Merged-chr13-100453860-3	chr13	100453747	100453947	+	779.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008670)	promoter-TSS (NM_008670)	-983.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	3.11509279052468	3.67950887988091	3.32269673984629	3.28786003422224	3.79313206509754	3.501068505034	3.59510834362742	3.88461521949439	1.08431415017602	0.0411913383454891	0.205333585831891
Merged-chr10-68127343-4	chr10	68127241	68127441	+	869.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 6 of 9)	intron (NM_023598, intron 6 of 9)	147771.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	4.86588886479467	4.45632549112089	4.69803185032901	4.9565543575584	4.21982265312037	4.35124136843614	4.15238543786375	4.62057096789729	-0.953854775382843	0.0148185800559512	0.103918395054438
Merged-chr6-131281667-3	chr6	131281551	131281751	+	907.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	11593.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	3.28090883056348	3.31628893562194	3.62194306129226	3.20481870471251	4.3099082004907	4.20882305708576	4.32670923163262	3.98824454862523	2.59324608980921	4.68203481377216e-08	2.15983510051516e-06
Merged-chr12-81927978-3	chr12	81927862	81928062	+	964.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 6 of 35)	intron (NM_018814, intron 6 of 35)	67932.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	4.25486795422116	4.6715417377835	4.34599452917557	4.89913149816271	4.00791576468483	4.23326179192176	4.36888414365467	3.99541182171401	-1.03208979766702	0.0158569274587179	0.109037561397713
Merged-chr17-23924832-4	chr17	23924740	23924940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	7382.0	NM_001077633	620253.0	Mm.390964	NM_001077633	ENSMUSG00000057417	Dcpp3	Dcpp-3|EG620253|SPT-3	demilune cell and parotid protein 3	protein-coding	7.50013747957947	7.56228663195689	7.26674999648347	7.55834208021941	7.58196256574018	7.48836813214982	7.81051252344771	7.523841403328	0.164822738664612	0.365260625211108	0.669970778794554
Merged-chr2-158145607-4	chr2	158145499	158145699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 1 of 12)	intron (NM_009373, intron 1 of 12)	793.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	7.93671397590381	8.65321834927155	8.51992364542274	8.07784938601963	8.3503417643978	8.28860965970692	8.31708536923531	7.86418235559341	-0.137863255885405	0.523372762986087	0.782464816143387
Merged-chr6-50381783-4	chr6	50381662	50381862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	MER5B|DNA|hAT-Charlie	1075.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	7.09897807179339	7.63529018743514	7.17246356534593	7.1065087849495	7.62048917671905	7.61232690310262	7.30021471941285	7.28992228149164	0.263321088747469	0.216870178420901	0.523576380620064
Merged-chr16-55822011-7	chr16	55821839	55822039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159394, exon 1 of 12)	exon (NM_001159394, exon 1 of 12)	199.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	8.08051093120143	8.90221434342878	7.71419993006208	6.80885464742273	8.60445979760541	8.92217637625906	8.18991490792318	7.76015328522661	0.436100615792806	0.467544434608931	0.747026558181345
Merged-chr17-25874883-4	chr17	25874810	25875010	+	972.392822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026686)	promoter-TSS (NM_026686)	-590.0	NM_026686	68347.0	Mm.35098	NM_026686	ENSMUSG00000025731	Mettl26	0610011F06Rik	methyltransferase like 26	protein-coding	4.22210803086543	4.53660728647298	3.97790937722328	4.16023741381675	4.24303361722044	4.30239701301215	3.96262159077995	4.34775761210456	-0.0470571001639751	0.910960420018965	0.966904162861598
Merged-chr3-95631063-4	chr3	95630949	95631149	+	853.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001026212)	TTS (NM_001026212)	6069.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	4.52130644564017	4.54016798802443	4.94743089734623	4.91121424234592	4.06264219842054	4.52000575483022	4.69427827980108	4.38639538242619	-0.721541375718548	0.0706325822000428	0.284895821863028
Merged-chr8-23257121-4	chr8	23257046	23257246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042484)	promoter-TSS (NM_001042484)	-66.0	NM_001042484	57437.0	Mm.196269	NM_020585	ENSMUSG00000015341	Golga7	AB041568|C130038N16Rik|GCP16|GOLGA3AP1|HSPC041|R75586	golgi autoantigen, golgin subfamily a, 7	protein-coding	7.28076331850279	7.29224841777305	7.17375250260662	7.22367164350096	7.32138284861377	7.00197916070098	7.20363381675403	7.02517175454452	-0.121149406952533	0.518063772207329	0.779274328866135
Merged-chr5-73637931-3	chr5	73637858	73638058	+	867.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011890, intron 5 of 5)	intron (NM_011890, intron 5 of 5)	-5537.0	NM_153568	231296.0	Mm.168948	NM_153568	ENSMUSG00000067206	Lrrc66	-	leucine rich repeat containing 66	protein-coding	3.72264291503617	3.57761197812172	3.32515607117217	3.70355504103045	3.45474049242782	3.73866490140866	3.75476514465412	3.61928859487024	0.135680947865715	0.784802862988763	0.916242668033676
Merged-chr2-11500755-4	chr2	11500661	11500861	+	889.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	1329.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	4.33731751681347	4.2302421469255	4.45779096572302	4.43221171363579	4.15303774851161	4.07264162689537	4.23261750034823	4.20310709291766	-0.504324571729496	0.196375556679914	0.49739576360827
Merged-chr5-123436334-4	chr5	123436202	123436402	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133917, intron 1 of 16)	intron (NM_133917, intron 1 of 16)	41504.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	4.94788545632849	4.80729345441576	4.40954867665702	4.92475139930414	4.91420114586136	4.58780744614456	4.6077347202693	4.30785944023061	-0.341330265648953	0.37472422215391	0.677891254741963
Merged-chr1-131394680-3	chr1	131394570	131394770	+	949.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-115107.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	3.52614453656799	3.35077345738677	3.41068156682771	3.65034030360495	3.44883244844643	3.64289878994913	3.88871207036107	3.52470222829242	0.426355883174485	0.401567310564621	0.699140908156458
Merged-chr4-105225801-4	chr4	105225705	105225905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 5 of 5)	L2c|LINE|L2	68458.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	6.95917350819212	7.51418469130178	7.41440858098044	7.38373096073151	7.54333182787438	7.59150461440637	7.6557456455733	7.30761050551608	0.255658638138179	0.20052742826412	0.502543620512921
Merged-chr5-148540081-2	chr5	148539981	148540181	+	589.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	11592.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	2.72484432699395	2.6478235824772	2.7917745703154	2.60305369166503	3.02209279035663	2.89963734051196	3.06812735437545	2.85376964780301	1.29296420302075	0.0339301382530272	0.181759538349104
Merged-chr7-110381773-3	chr7	110381671	110381871	+	956.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	160068.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	3.5368314672332	3.97159330623659	3.64769704093279	4.02412056225831	3.47897037914388	3.65340167273807	3.40523488021303	3.47665291340201	-1.01287692915778	0.0467960734056228	0.222409389851499
Merged-chr11-115631161-4	chr11	115631062	115631262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2867.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	7.77549633787975	7.89179377135014	7.2601343163222	7.24806715892559	7.73067295353463	7.85171899646221	7.52578521295797	7.51216280771208	0.120193899895733	0.585938680116588	0.818478990587386
Merged-chr8-70131325-4	chr8	70131241	70131441	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104434)	promoter-TSS (NR_104434)	14.0	NM_001025587	75692.0	Mm.161167	NM_001025586	ENSMUSG00000071078	Nr2c2ap	2310073E15Rik	nuclear receptor 2C2-associated protein	protein-coding	4.93728650837258	5.58107561045751	5.23009662787412	5.21717093523581	5.81010075767481	5.37364140015601	5.49316132731088	5.2902109919971	0.450019379356782	0.154535081934574	0.439801241388062
Merged-chr11-77410074-4	chr11	77409966	77410166	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 4 of 13)	intron (NM_001291190, intron 4 of 13)	-53847.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	5.27494842213909	5.26442002763299	5.18142611892619	5.47486841324918	5.11512671543425	5.44911537972455	4.98292171601354	5.35996904092463	-0.15332798376802	0.614929253466429	0.834205058216801
Merged-chr1-171686695-4	chr1	171686590	171686790	+	855.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007649, intron 1 of 3)	intron (NM_007649, intron 1 of 3)	4698.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	4.11842962617	4.15669305212775	4.01938461105427	4.22641674214105	4.23326840806106	4.33743330856827	4.14836891200464	4.37640018227318	0.331751003383556	0.400670175946609	0.69842049404182
Merged-chr2-118549799-4	chr2	118549704	118549904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138313)	promoter-TSS (NM_138313)	-118.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	7.85714521920143	8.20868395360472	7.73565184905286	7.6579974385703	7.67185401078374	7.84692197420525	7.76071684480242	7.52017599119317	-0.229267862463965	0.241490403276933	0.552034276752374
Merged-chr4-103123233-4	chr4	103123141	103123341	+	939.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039081, intron 1 of 12)	intron (NM_001039081, intron 1 of 12)	3851.0	NM_001039081	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	4.31239260843051	4.42431999519436	3.89110266455872	4.26227583047395	4.45037569862866	4.72776821171291	4.42134648479406	4.43902746033293	0.631001381702714	0.111212755682306	0.368497988009955
Merged-chr18-68119924-4	chr18	68119810	68120010	+	854.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	RMER19B|LTR|ERVK	-108036.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	3.48015249006669	3.62976345347555	3.48059112243396	3.77938245278889	3.70101082561823	3.65042779935388	3.52268621208332	3.29836103186199	-0.172491066681832	0.735959983453246	0.895751244963882
Merged-chr11-49869994-1	chr11	49869894	49870094	+	621.0	f0_c57.idr	intron (NM_016961, intron 5 of 11)	intron (NM_016961, intron 5 of 11)	23243.0	NM_016961	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	4.07098942370678	3.39608000996532	3.20692991504605	3.21202670189733	3.84067661625336	3.52430866388928	3.45419541891935	3.73246911556717	0.400493273515735	0.489623672228939	0.761918702380439
Merged-chr9-55511818-2	chr9	55511731	55511931	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_145615, intron 1 of 11)	CpG	412.0	NM_145615	110842.0	Mm.290853	NM_145615	ENSMUSG00000032314	Etfa	2010200I21Rik|D9Ertd394e	electron transferring flavoprotein, alpha polypeptide	protein-coding	5.72415999312981	5.97877552123794	5.93735636124316	5.83223108361107	5.69121819578973	5.73880037520393	5.77050556838976	6.0370884961204	-0.0952613341785865	0.707129453018581	0.882396225404233
Merged-chr15-12371371-4	chr15	12371246	12371446	+	965.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081064, intron 20 of 23)	intron (NM_001081064, intron 20 of 23)	49850.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	4.40252482058192	5.09542310917514	5.21147918857309	5.02693531985899	4.85811841170356	4.73554726188032	5.21329572742597	5.08833276187371	0.0264168725274415	0.942543032299206	0.979183918526066
Merged-chr13-43789200-4	chr13	43789106	43789306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	4094.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	8.10861582039248	8.29029999642808	8.24313801047846	8.18704570943584	8.1177332739614	8.05668044559629	8.21004524117405	8.29927106024225	-0.0453715739815158	0.771762211674214	0.910501791163046
Merged-chr8-57574621-4	chr8	57574528	57574728	+	947.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 2 of 11)	intron (NM_001167981, intron 2 of 11)	62785.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	4.66143723982046	4.91824670218324	4.82388371626615	4.69522555176411	5.03511139014643	4.99886002563797	5.39078489454982	4.7014827907763	0.558146085992498	0.102012278936192	0.350642323837447
Merged-chr7-97738155-4	chr7	97738082	97738282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175105)	promoter-TSS (NM_175105)	65.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	6.29348370055359	6.09369309294435	6.34720945841371	6.35226914632103	6.00050124363153	6.19157177352584	6.33161258765214	5.62212099146728	-0.333953549958332	0.193905855019791	0.49423946044885
Merged-chr10-60282252-4	chr10	60282189	60282389	+	945.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 1 of 14)	intron (NM_011179, intron 1 of 14)	-2172.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	4.76360083777654	4.44650686854253	4.80287622009764	4.95722401858621	5.23638833099469	4.63904532506877	5.01912822740342	5.04053301437337	0.486509641750741	0.173535892900086	0.467581910161457
Merged-chr17-47672572-3	chr17	47672482	47672682	+	948.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198421, exon 3 of 7)	exon (NM_198421, exon 3 of 7)	-15028.0	NR_045945	100415787.0	Mm.392206	NR_045945	ENSMUSG00000084880	Tomm6os	Gm14872|Prickle4os	translocase of outer mitochondrial membrane 6, opposite strand	ncRNA	4.10031692419115	4.07109389619155	4.10096691930692	4.12448610493337	3.56430747973976	3.63971920167825	3.74856033378023	3.81512562666661	-1.20419409442223	0.00769512691590613	0.065367844404975
Merged-chr3-132085991-3	chr3	132085922	132086122	+	745.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_020265, exon 1 of 4)	5' UTR (NM_020265, exon 1 of 4)	730.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.0450462360288	2.77813556671307	2.99055253817616	2.78081106686257	2.75082310877935	2.85027724173668	2.92191203467926	2.67305136387529	-0.443843824153269	0.48154727215791	0.756679175348312
Merged-chr10-125321661-4	chr10	125321570	125321770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 1 of 5)	intron (NM_001358496, intron 1 of 5)	7293.0	NM_011391	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	6.54144166869907	6.20144420379482	6.81447657803871	6.61173243091619	6.29218519519102	6.2413499094761	6.71408315557859	6.40312589492767	-0.198831156944108	0.415857836705976	0.709930066326653
Merged-chr16-94313446-4	chr16	94313338	94313538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139145, intron 1 of 10)	CpG	125.0	NM_139145	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	7.88868672267109	7.99864681849092	8.28860269218791	7.79492524021051	7.72704216785767	8.19959930963146	7.9233046529853	7.99717753818522	-0.0429659177377416	0.823963047862684	0.932476232435989
Merged-chr11-30772378-4	chr11	30772282	30772482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134013, intron 1 of 46)	CpG	607.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	6.20444350533193	6.31775022872415	6.45190335865605	6.36814536922958	6.09216230026595	6.00064601828299	6.23073466404124	6.0785485834879	-0.361892826054662	0.108950859116894	0.364410187542004
Merged-chr13-52603444-4	chr13	52603353	52603553	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	6571.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	5.14122547100356	5.3074217078	5.20437765753084	5.35799684164738	5.08477550903122	5.07309895253894	4.9478596133579	4.81358008353623	-0.523694611301415	0.0872597077883273	0.322207572884892
Merged-chr4-155066152-4	chr4	155066059	155066259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042407)	promoter-TSS (NM_001042407)	-871.0	NM_001042407	668173.0	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	5.9098824791788	5.88416954008978	5.34240503679752	5.56591794016355	6.2388592327566	6.04065899668819	6.35098902553064	6.19292379627076	0.826729514364776	0.00150302513139383	0.0187059042253599
Merged-chr2-129622095-4	chr2	129621998	129622198	+	825.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	26636.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	3.70334557303712	3.30652733869299	3.64966752356432	3.73553311689794	3.96966172301437	3.65088241007067	3.96977109583663	3.85163205659516	0.750795379388569	0.121662164857613	0.386356101585507
Merged-chr3-27677717-4	chr3	27677611	27677811	+	973.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	32741.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	4.99707633895181	4.74171800391324	5.45897162063243	5.47476272561617	4.87314638601513	4.86482636297601	4.78848950113521	5.02881740719204	-0.627309384593073	0.0760383880953582	0.297838946738032
Merged-chr5-151233690-4	chr5	151233562	151233762	+	841.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-43469.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	3.61959772102152	3.92001193956425	4.17317989048002	4.0038452142568	3.89076397915639	3.91575371584197	3.93384884460479	4.08623439772924	0.0256661484882548	0.954201217076614	0.983707323305375
Merged-chr13-13523722-3	chr13	13523632	13523832	+	834.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66677.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	3.00399795014254	3.33437479569346	3.00428743565129	3.2715405711503	3.4487284592946	3.3108892158637	3.40744518665939	3.36787422612606	0.774101840887327	0.163014112955833	0.452595137733869
Merged-chr2-6258656-4	chr2	6258563	6258763	+	963.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-45669.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	4.77293502712242	4.66121519577475	4.53015677210824	5.18445139084562	4.44558702532867	4.46925385321622	4.82218846717617	5.03591746513164	-0.241532046950334	0.541399741059454	0.793237936001129
Merged-chr2-153060309-4	chr2	153060201	153060401	+	855.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5654.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	3.80575452534324	3.81521697698332	3.47645367804533	3.72403408030197	4.73501986373385	4.29399270983821	4.42413404160308	4.16271237835566	1.84954616313651	3.72152496828705e-05	0.00087366235395021
Merged-chr11-79083730-3	chr11	79083632	79083832	+	901.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-23896.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	3.65406447838734	3.65218063196195	3.9844091953954	3.62773812203958	3.37990735722722	3.32777988859969	3.58550748126613	4.06180750548625	-0.344317725521316	0.520517753857675	0.780787600139836
Merged-chr9-40814228-4	chr9	40814121	40814321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12948.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	5.99781830513601	6.47221963938762	5.76754369727981	6.11971036755162	6.69023376919553	6.41106428612815	6.40022495078409	6.54031177398409	0.597150357451866	0.0172127299497412	0.115594386743337
Merged-chr4-141015473-4	chr4	141015376	141015576	+	649.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161799, intron 8 of 8)	intron (NM_001161799, intron 8 of 8)	4839.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	3.86111950514184	3.66810141732405	3.86167343141282	3.84812927160037	3.77401038451365	3.81870728255268	4.03226312402311	4.21188621725811	0.430719301940453	0.33643842407185	0.646448793467285
Merged-chr5-117133583-4	chr5	117133503	117133703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183306)	promoter-TSS (NM_183306)	15.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	5.93946037945307	6.03346799567163	5.89562468768043	5.94918659522635	5.76141500951462	5.70624984169099	6.03522620357739	5.89143237461896	-0.166792324167143	0.496307623625385	0.766272186500179
Merged-chr5-92028900-1	chr5	92028800	92029000	+	574.0	f0_balb.idr	intron (NM_001276315, intron 6 of 12)	B4|SINE|B4	13796.0	NM_001276315	53886.0	Mm.44963	NM_016912	ENSMUSG00000029403	Cdkl2	5330436L21Rik|AI505225|KKIAMRE|Kkm	cyclin-dependent kinase-like 2 (CDC2-related kinase)	protein-coding	2.57579121042976	2.26172555440498	2.35465520142938	2.33747544924891	1.84881696177416	1.94433220302157	1.92615250776286	1.92912371454671	-5.31636728930926	1.11888418886198e-05	0.000304787821197884
Merged-chr18-38248034-2	chr18	38247934	38248134	+	692.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_015475, intron 1 of 3)	L2c|LINE|L2	2164.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	3.40100265820221	3.07467115646692	3.12507901182343	2.93555346177863	3.12320646410076	3.29801990080178	3.17327944208993	3.24108778657276	0.285862838622039	0.613331281944009	0.833250529002088
Merged-chr10-78481100-4	chr10	78481013	78481213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16165.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	5.54435123131192	5.28761711444643	5.92305632724166	5.63100373852186	5.46055971195036	5.54582050896574	5.74217664625241	5.67199103366558	-0.013999166650346	0.960845911233385	0.986028483619322
Merged-chr14-118662218-3	chr14	118662125	118662325	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033336, intron 3 of 30)	intron (NM_001033336, intron 3 of 30)	14706.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	3.59869415099535	3.89708112913521	3.85865710942181	3.78765012374225	3.53489873857901	3.77311839544172	3.79464991697262	3.65341492199354	-0.31731962054244	0.496649467503248	0.766593513949695
Merged-chr18-12729017-4	chr18	12728910	12729110	+	992.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 9 of 13)	intron (NM_028341, intron 9 of 13)	-12345.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	5.25617173482316	5.54134618869529	6.11000552907334	5.84577444129155	6.23162781225649	6.13784981960944	6.28109741135615	6.68888765328764	0.961039856391651	0.00106380010323921	0.0141427395495823
Merged-chr10-88826806-4	chr10	88826702	88826902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175158)	promoter-TSS (NM_175158)	12.0	NM_175158	70683.0	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	6.3306808070075	6.21998716013338	5.83459142509447	6.0674387207494	6.51430141327612	6.2301071649078	6.4499283183468	6.41353457840053	0.435203534518873	0.0635613227212503	0.267656008864612
Merged-chr5-32192241-4	chr5	32192150	32192350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40458.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	6.69547926705855	6.56850738540115	6.56218118499855	6.34254264516975	6.44539240630021	6.75328712320364	6.20846245396613	6.33374942888923	-0.130336590459208	0.576266562552079	0.813465010170186
Merged-chr2-165062230-4	chr2	165062136	165062336	+	948.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027852, intron 1 of 7)	intron (NR_027852, intron 1 of 7)	6600.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	5.45488758487248	5.96536378519155	4.92223081870315	4.77124408116419	5.81109894148216	5.9619252484761	5.82359905663726	5.5090622641561	0.7088692360838	0.0556515324685026	0.246922270048317
Merged-chr4-134853972-4	chr4	134853864	134854064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355501)	promoter-TSS (NM_001355501)	-619.0	NM_025382	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	7.7052208935374	7.74517231766725	7.06708671695832	7.18667061230161	7.82506750123709	7.81011159664491	7.6037809717615	7.58475218008985	0.337702140073046	0.122820005158775	0.388421608708245
Merged-chr10-60398620-4	chr10	60398522	60398722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 28 of 68)	intron (NM_001252635, intron 28 of 68)	-1104.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	7.09632461298811	7.08216016243477	6.8677065766229	7.02003268609334	7.08155278137414	7.43741185155658	6.84676541902302	6.90416849384932	0.0903892660110042	0.669471301959131	0.863500911518511
Merged-chr4-139296866-3	chr4	139296787	139296987	+	883.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151463, intron 9 of 10)	intron (NR_151463, intron 9 of 10)	13821.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	3.75132110806125	4.21007462619832	3.75187104714695	3.26098031938244	3.450851754221	3.92575736254875	3.73596166532662	3.69652507380074	-0.224654827896013	0.680597340345327	0.868928920613391
Merged-chr2-173020052-4	chr2	173019970	173020170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1832.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	6.95595559950667	6.69770117936977	6.35401234668751	6.52060270430492	6.59736238666208	6.55114295523346	6.95718051480907	6.57865942098086	0.0511758881206132	0.827252972006918	0.933776927868828
Merged-chr8-122436812-4	chr8	122436792	122436992	+	921.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028354, intron 8 of 10)	intron (NR_028354, intron 8 of 10)	-3952.0	NM_007806	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	4.3058895862636	4.26877573070185	4.60630795165601	3.95179530735804	4.23985062363078	4.20063698398455	4.05816975378873	4.07284787507616	-0.35265988497913	0.412014828596276	0.70726645326551
Merged-chr11-102573006-4	chr11	102572901	102573101	+	838.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6118.0	NR_040286	100040792.0	Mm.277966	NR_040286	ENSMUSG00000078640	Gm11627	-	predicted gene 11627	ncRNA	4.28222410464076	4.27181347917732	3.95926522204123	4.01318979898613	4.04053996472611	4.23287999815969	3.89028853005703	4.19586749394323	-0.10411934276205	0.804886299011668	0.925078769566449
Merged-chr11-3186806-4	chr11	3186724	3186924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 3 of 32)	intron (NM_030207, intron 3 of 32)	6639.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	7.08104955135408	7.02314079327305	6.73420553834971	6.74051661975191	7.43554069665712	7.3157283779365	6.74514793489764	6.83292986347713	0.310025789267909	0.193837989588172	0.494151150062551
Merged-chr11-69766145-9	chr11	69766055	69766255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029348, intron 1 of 3)	CpG	243.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	5.26158393774635	5.02271005892576	5.38395765385952	5.25808376333242	5.44853452073102	5.49932925379946	5.3279915311247	5.73115884959765	0.481554016999727	0.0956289178164202	0.338582100421041
Merged-chr2-27680715-4	chr2	27680624	27680824	+	906.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	3523.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	4.22984186059077	3.97640007227729	4.18637866783938	4.30747787132425	4.11894736280284	4.16751570418193	4.12283487292911	4.18380932988779	-0.107083861547895	0.790647043019734	0.918840742585233
Merged-chr6-134984216-1	chr6	134984116	134984316	+	564.0	f1_c57bl6.idr	exon (NM_001109914, exon 2 of 2)	exon (NM_001109914, exon 2 of 2)	2215.0	NM_001109914	381823.0	Mm.296104	NM_001109914	ENSMUSG00000090698	Apold1	Gm1075	apolipoprotein L domain containing 1	protein-coding	3.13497731148894	3.09753335094902	2.91176842995363	2.90750182865158	2.89191903532138	2.88970463659555	2.70683529563343	2.64045584734066	-1.01838461248431	0.114511815701364	0.374333966473639
Merged-chr12-111166930-2	chr12	111166830	111167030	+	987.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286122, intron 1 of 9)	CpG	560.0	NM_011632	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	3.69557935856091	3.74469053826959	4.08118422142854	3.31489159149475	4.12042512300034	3.81674748849602	3.62493017180282	3.99268182506948	0.5126518177781	0.317037244068102	0.628905690750891
Merged-chr17-56298637-4	chr17	56298547	56298747	+	834.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029799, intron 1 of 2)	B2_Mm2|SINE|B2	1639.0	NM_029799	76920.0	Mm.329132	NM_029799	ENSMUSG00000073380	Arrdc5	1700013E09Rik	arrestin domain containing 5	protein-coding	3.89031808623298	4.19102678488549	3.94426140906284	4.03348838882104	4.36557410196381	4.06642782262799	3.97908206682794	4.22265305544066	0.393592851870522	0.349079943600922	0.656765556493198
Merged-chr4-48046441-1	chr4	48046341	48046541	+	543.0	f0_c57.idr	intron (NM_015743, intron 1 of 7)	intron (NM_015743, intron 1 of 7)	1136.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	3.22874489914512	3.22543638232239	3.45614902804178	2.92508408870192	3.34404365412106	3.51938974433477	3.27720856403524	3.50502055467297	0.737877887586503	0.182909999876291	0.479697384481446
Merged-chr17-34117380-7	chr17	34117294	34117494	+	952.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204973, intron 2 of 12)	B1_Mus1|SINE|Alu	2506.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	4.37668597333818	5.02777268421675	4.79003453001375	4.47556399060348	5.14405375421779	5.04208084959388	5.07778740942192	5.37510291682283	0.950626555441554	0.00662425037896784	0.0584127251888692
Merged-chr13-102849278-3	chr13	102849171	102849371	+	970.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 5 of 28)	MLT1E3|LTR|ERVL-MaLR	89016.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	3.79054681466178	4.16507488291284	4.13024868862571	4.55452934591846	3.65417490331481	3.66776101947807	3.93060303759333	3.61198298399373	-1.36209716153621	0.00559848955187552	0.0516332751685871
Merged-chr8-71882010-4	chr8	71881887	71882087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145624)	promoter-TSS (NM_145624)	-81.0	NM_145624	236193.0	Mm.290790	NM_145624	ENSMUSG00000056019	Zfp709	BC021921|GIOT-4|HIT-40	zinc finger protein 709	protein-coding	6.85812682962219	6.71196018960155	6.84520827419414	6.66083749340396	7.27682326303081	7.38835275496814	7.33430822031901	7.03703287492713	0.695570552031681	0.000333074548471949	0.00553018737711334
Merged-chr4-86690392-4	chr4	86690295	86690495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20336.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	8.25360041257481	8.32174407468663	8.20817254938632	8.16075479436052	8.15617628133077	8.35558390868792	8.24441739698321	8.23799104990563	0.0156645073826799	0.918410160215795	0.969975766659249
Merged-chr8-10645913-3	chr8	10645792	10645992	+	920.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	236562.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	3.54508461434744	3.51297337396328	3.74800902366186	3.83597823515217	3.68699834620053	3.48264291257777	3.29509441882944	3.54365060544535	-0.508197670958844	0.320653259602037	0.632430335149585
Merged-chr15-27681597-4	chr15	27681501	27681701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242423)	promoter-TSS (NM_001242423)	-59.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	8.2468794309142	8.11021947460479	8.33214969292151	8.28292647261197	8.31776419103707	8.23208702764388	8.44995485451541	8.14043571690783	0.0582132759230589	0.715695551320769	0.886371710249844
Merged-chr13-67723968-3	chr13	67723878	67724078	+	943.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145622, intron 1 of 3)	intron (NM_145622, intron 1 of 3)	5195.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	3.80218713910029	4.09364973925225	4.31770033273848	3.80496809862687	3.97387657501912	4.08800238330345	4.13471509819456	4.10625045982315	0.166411173339178	0.703805956911776	0.880889822525466
Merged-chr19-3414482-4	chr19	3414375	3414575	+	957.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329667)	promoter-TSS (NM_001329667)	69.0	NM_001329667	14419.0	Mm.4655	NM_010253	ENSMUSG00000024907	Gal	Galn	galanin	protein-coding	4.69917656193093	5.12739015758909	5.16183116599809	4.88595368853669	4.93750387277327	4.87799162621816	5.19388485052472	4.89451960074748	0.00923017769500769	0.977659406047161	0.991939645680407
Merged-chr6-32718078-4	chr6	32717975	32718175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129883.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	6.17978403142502	6.33805499040652	6.53548871505936	6.54356077958755	6.05176669341779	5.86989817251084	6.37256701653117	6.64851323458609	-0.217849473700327	0.408013502625579	0.704118963290259
Merged-chr11-97883682-4	chr11	97883583	97883783	+	947.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081435, intron 1 of 10)	CpG	471.0	NM_001081435	72973.0	Mm.245939	NM_001081435	ENSMUSG00000070336	Fbxo47	2900052P03Rik|Gm1562	F-box protein 47	protein-coding	4.82179246579818	5.00919553228722	4.66575561271982	4.56892851437892	5.05949587859735	5.13328990867665	4.76250952407429	4.62045353648071	0.297709871371392	0.399772933781678	0.697861775510926
Merged-chr17-64616430-4	chr17	64616333	64616533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	14784.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	7.39681217908739	7.1477074069393	7.4268843499357	7.76572524270054	7.29956496671559	7.25672516146641	7.37097529266886	6.91405045699141	-0.323302410659451	0.135880478533053	0.410258179491164
Merged-chr16-87584876-3	chr16	87584744	87584944	+	870.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144854, intron 4 of 4)	intron (NM_144854, intron 4 of 4)	31514.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	3.22823821546266	3.23943965814619	3.17440167158535	3.14830182408171	2.96072802858814	2.81873062948481	2.9862872767728	3.1160541413667	-0.92212557103596	0.117076986981603	0.378533169658281
Merged-chr4-105213438-4	chr4	105213327	105213527	+	757.233337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 4 of 5)	intron (NM_080555, intron 4 of 5)	56080.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.69044643944856	3.66037189229909	3.99598771289587	3.87388278852348	4.01430379026302	3.92075132575573	4.06467890643939	3.74498010314651	0.36423456222971	0.416593725993377	0.710619364035721
Merged-chr5-64852883-4	chr5	64852773	64852973	+	981.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	49350.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	5.39790641561172	5.12310850363465	5.06708769210683	5.25356017788005	5.25576505426114	5.13568243269568	4.89806281190572	5.1944755531253	-0.157040668771263	0.607790710063274	0.830283203337722
Merged-chr10-17383162-4	chr10	17383053	17383253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-287371.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	6.05623851116564	5.99390534065576	5.95327957584823	5.76918334583155	6.06248770883647	5.69644106272333	5.92288488883278	5.5731808038638	-0.154659239173809	0.558028833183176	0.802963980746693
Merged-chr3-15769082-2	chr3	15768981	15769181	+	792.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79406.0	NM_001173459	100038947.0	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	2.05292372812121	2.01365149968239	2.05306936627514	1.81610757449348	2.66879357139041	2.67513567786064	2.55023751384607	2.61956911580404	6.56549445824367	6.52745157504182e-10	4.35035089569196e-08
Merged-chr17-33033299-4	chr17	33033175	33033375	+	964.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028543, intron 1 of 3)	intron (NM_028543, intron 1 of 3)	106.0	NM_028543	73451.0	Mm.129453	NM_028543	ENSMUSG00000067430	Zfp763	1700065O13Rik|AI839635	zinc finger protein 763	protein-coding	4.83936369281735	4.52480355415431	4.692197814311	4.96091215220339	4.46484651729342	4.82666480002536	4.50467432332337	5.0303534066589	-0.112936955178298	0.762872893347883	0.907015239695587
Merged-chr1-182935599-4	chr1	182935500	182935700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19188.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	6.45246756723144	5.99126089733002	6.30773424906331	5.81567473603842	6.04569260060605	5.85170853429255	6.00930490483525	5.90129103765233	-0.296567067688241	0.267484837179046	0.579177784876944
Merged-chr17-87282848-4	chr17	87282822	87283022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015506)	promoter-TSS (NR_015506)	36.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	7.16613464319801	7.3810353628246	7.13245963316596	7.37294321225928	7.23932307161293	7.28558630767844	7.292443789836	7.12747258004813	-0.0539997274919473	0.769131756202177	0.909704707123874
Merged-chr5-23598136-3	chr5	23598035	23598235	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152854, intron 2 of 14)	MTC|LTR|ERVL-MaLR	18436.0	NM_001359175	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	4.21108388272754	3.91687133525758	4.03669715174221	4.48552185544524	3.78639267800349	3.71260290113337	3.97196170821561	3.8853932409421	-0.96793259990531	0.0349480119682392	0.185114194365776
Merged-chr18-42260110-2	chr18	42260014	42260214	+	685.583374	f0_balb.idr|f1_c57bl6.idr	intron (NM_134137, intron 1 of 31)	intron (NM_134137, intron 1 of 31)	1957.0	NM_134137	107045.0	Mm.312170	NM_134137	ENSMUSG00000024493	Lars	2310045K21Rik|3110009L02Rik|AW536573|mKIAA1352	leucyl-tRNA synthetase	protein-coding	3.28193786022169	3.37405211446741	3.5711107162517	3.25572378169189	2.84895779718128	2.86597522447222	3.0976546243685	2.9078895802044	-1.88594930816328	0.00263327054455327	0.0288630355264026
Merged-chr13-30981836-3	chr13	30981744	30981944	+	690.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7797.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	3.64737785208617	3.87088315875293	3.8594806782434	3.82877353005913	3.72747973032235	3.51111286864607	4.02244476920046	3.99547540790799	0.0667946331817292	0.886889075804294	0.957513044740158
Merged-chr5-148550568-4	chr5	148550454	148550654	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	1119.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	5.00813916700166	5.0837178516315	4.93397780959737	5.42117329480868	5.17974047472729	5.25476233578869	5.38437057986515	5.26786787479573	0.219865877845064	0.486366520115977	0.760100660715873
Merged-chr17-36824232-4	chr17	36824122	36824322	+	823.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30|LTR|ERV1	12047.0	NM_201611	399549.0	Mm.329034	NM_201611	ENSMUSG00000037130	H2-M10.6	-	histocompatibility 2, M region locus 10.6	protein-coding	4.0552064416551	4.14312959511512	4.24188192455748	4.1485405718314	4.24207147380912	4.27687661393716	4.13423920259467	4.19522885769772	0.165056535101315	0.673646653020515	0.865848986388019
Merged-chr4-62847454-4	chr4	62847340	62847540	+	991.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118134.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	5.61115095438944	5.79780457403275	6.23000581022435	6.00159183251065	5.66217680111377	5.22007828674982	5.58382746720976	5.96498020511858	-0.481942242451694	0.106653130420191	0.360092172003545
Merged-chr7-43283380-4	chr7	43283259	43283459	+	893.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29941.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	4.24346567776424	3.7635451969999	3.79165911987737	4.07431866436233	4.22666057489949	4.02958107532732	4.34462932580852	4.43708067454346	0.712181738116551	0.100228344830667	0.347432581681266
Merged-chr3-61363797-4	chr3	61363706	61363906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028712)	promoter-TSS (NM_028712)	-701.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	8.71603396123455	8.68126056804098	8.75517540708257	8.67262971602696	8.63896473243166	8.73629928572104	8.88858263979497	8.71612249017221	0.0513861535987629	0.722905530735663	0.88929836629567
Merged-chr1-133661903-3	chr1	133661768	133661968	+	811.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166552)	promoter-TSS (NM_001166552)	-469.0	NM_001276767	70579.0	Mm.245357	NM_144530	ENSMUSG00000102976	Zc3h11a	1110003F06Rik|5730454B08Rik|G630041M05Rik|Zc3hdc11a|Zc3hh11a|mKIAA0663	zinc finger CCCH type containing 11A	protein-coding	3.16976957616431	2.90112044556983	3.04917697284589	3.29941190482908	3.202233346026	3.15792715738289	3.15842146405169	3.27887970942315	0.291476907603015	0.610733326606001	0.831904433360537
Merged-chr6-148989693-4	chr6	148989603	148989803	+	938.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177192, exon 21 of 21)	3' UTR (NM_177192, exon 21 of 21)	-43233.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	5.18027514623449	4.53604860966379	4.82174290197417	5.2767995832807	5.22707282898042	5.44413944000574	5.38239934193279	5.17757441174192	0.568813094388073	0.100560985536949	0.348111460691156
Merged-chr12-38863609-4	chr12	38863500	38863700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347379, intron 11 of 11)	intron (NM_001347379, intron 11 of 11)	79889.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	6.28890258182003	6.48144630170426	6.5013970792809	6.86198697779244	6.3471925441598	6.50413320138579	6.07332145986476	6.16496546004739	-0.421541434834961	0.0879266614173254	0.323471771398791
Merged-chr15-84829607-3	chr15	84829521	84829721	+	844.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356573, intron 2 of 12)	intron (NM_001356573, intron 2 of 12)	25478.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	3.83883507982882	3.69091479975693	3.73855833171593	3.88739457809717	3.71022482134425	3.85675752489374	3.77443090909393	3.73647737312741	-0.0914547458130689	0.838952367243614	0.938856878340637
Merged-chr16-78215981-3	chr16	78215888	78216088	+	906.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	39466.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	3.77561487824544	3.94108180976872	4.11497425595914	3.75041773666526	4.33565073619714	4.05509951033573	3.52280213541296	3.82814751919872	0.222476819349679	0.652182463456645	0.854439454562498
Merged-chr10-9893719-4	chr10	9893620	9893820	+	793.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081344, intron 2 of 25)	intron (NM_001081344, intron 2 of 25)	7320.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	4.10673568798091	4.18406010922311	4.15033866762776	3.91014256636708	4.1194805229565	3.81855341382443	3.90304757137787	3.57241539482252	-0.563225556406663	0.224313423506621	0.532621849143601
Merged-chr7-45459458-4	chr7	45459358	45459558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010240, intron 1 of 3)	intron (NM_010240, intron 1 of 3)	428.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	6.94462814647785	7.62417450561271	6.88709206021074	7.05334112960138	7.76678308507754	7.99806356069494	7.67855703542984	7.87136664015229	0.883677383028865	6.69206538923953e-05	0.00144738536110811
Merged-chr4-155217583-4	chr4	155217478	155217678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	4957.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	6.1569323732081	6.0340785179225	5.9738364395645	6.21211249779877	5.58396436888366	5.96102783508115	5.87585307431713	6.09521802392778	-0.355906236601371	0.162163188545675	0.451235871676802
Merged-chr18-5603683-4	chr18	5603578	5603778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360981, intron 2 of 8)	intron (NM_001360981, intron 2 of 8)	11031.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	6.00080110953441	5.73767234869394	5.4714980834274	6.40995993393625	6.07841864840086	6.280607085548	6.20650391827744	5.83584789114073	0.209357241108707	0.490964224679123	0.762637595714714
Merged-chr12-113220749-4	chr12	113220643	113220843	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34840.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	4.76161440349285	5.34444424329731	4.9406850776535	5.18343994145714	4.46627647555294	4.38656912818959	4.81338934889402	4.41087958290356	-1.15911643231022	0.00167621587097611	0.0203568280976298
Merged-chr10-96624666-4	chr10	96624577	96624777	+	663.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7676.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	3.47650906601189	3.89138764664033	3.30724091337787	2.77336113374011	3.4203981514384	3.48437921674406	2.95839469204806	3.36439209905965	-0.373367978645211	0.577860400711005	0.814381921099761
Merged-chr19-43753212-8	chr19	43753107	43753307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144874)	promoter-TSS (NM_144874)	184.0	NM_025530	66388.0	Mm.20257	NM_025530	ENSMUSG00000025193	Cutc	2310039I18Rik|AI326282|CGI-32	cutC copper transporter	protein-coding	5.80949694680618	5.86695699211741	5.95295743626846	5.72553413055248	6.23882133778714	6.35226955974036	6.04980558544349	5.92607212936447	0.507477520233104	0.0382761816195456	0.196103097351014
Merged-chr11-70812651-6	chr11	70812562	70812762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045526)	promoter-TSS (NM_001045526)	-101.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	4.86251638892655	4.79124097194095	4.4166401085808	4.38977918296881	4.64590974150535	5.06838192139846	4.34853690621263	5.1355628302054	0.435944105963804	0.274073008994253	0.585797931271454
Merged-chr13-37432914-3	chr13	37432838	37433038	+	814.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87593.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.40658251728761	3.36998357052546	3.23372072940137	3.4172130445662	2.77877174886489	3.52320268011833	3.39307493210699	3.40510974854069	-0.194267356536187	0.753415784754023	0.902798885097597
Merged-chr5-92353757-4	chr5	92353673	92353873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-4884.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	6.69367584596964	7.29062786423343	6.80002225575453	6.49397559563436	7.25407576430568	7.21236368104597	7.10305161157279	6.43043682306118	0.265827830451761	0.327960258934774	0.639295721503993
Merged-chr4-133118307-4	chr4	133118211	133118411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12322.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	6.17298536301214	6.44743556507048	5.99846848758072	5.92004303902164	6.56858367606557	6.53957685310523	6.61296730678773	6.12800504997424	0.5035228523183	0.0448366919206845	0.216368196218468
Merged-chr1-36307705-4	chr1	36307586	36307786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033310)	promoter-TSS (NR_033310)	-47.0	NM_001172206	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	7.0919548987059	7.26711094276473	6.66972650817989	6.91657885923826	7.43435622976749	7.48915831331648	7.37250384904794	6.97543581867938	0.449241402377563	0.0412147365831448	0.205407067305116
Merged-chr17-69156809-4	chr17	69156752	69156952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013813, exon 1 of 22)	5' UTR (NM_013813, exon 1 of 22)	108.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	5.73389752002047	5.63237545485799	5.80456063035475	5.72092075944467	5.2737254106812	5.35498854580826	5.81901991256757	5.65714667044305	-0.312828906558461	0.26436084868602	0.576455127446606
Merged-chr14-24487076-4	chr14	24486984	24487184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081247)	promoter-TSS (NM_001081247)	-26.0	NM_001081247	218832.0	Mm.343610	NM_183157	ENSMUSG00000025280	Polr3a	9330175N20Rik|BC053071|RPC1|RPC155	polymerase (RNA) III (DNA directed) polypeptide A	protein-coding	6.16933825369456	6.19627935210138	6.06538355137685	6.13372446953771	6.38914785539756	6.54912268863911	6.19762103895889	6.14571248443114	0.285707436477437	0.212474258562631	0.517436225002987
Merged-chr8-128685704-4	chr8	128685695	128685895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010578, exon 1 of 16)	5' UTR (NM_010578, exon 1 of 16)	141.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	6.60808011631536	6.60546937275212	6.93120462540016	6.69424950007086	7.04215395353931	7.13305971480166	7.09750864479335	7.02547960394504	0.503956762805045	0.00993691143575008	0.078562636797207
Merged-chr4-103122805-3	chr4	103122707	103122907	+	836.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039081, intron 1 of 12)	intron (NM_001039081, intron 1 of 12)	3417.0	NM_001039081	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	3.26277254661925	3.25873243287041	3.3219623806925	3.33139995939207	3.48091256188868	3.49119612965821	3.19138885457598	3.48171162341098	0.432465115386106	0.403267939931871	0.700700507615324
Merged-chr3-61389657-3	chr3	61389563	61389763	+	670.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25156.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	3.87566801589306	4.09560796133513	3.78165626388565	3.71506070294475	3.71032425725245	3.62587003699508	3.37166215841188	3.38098445557918	-1.03723460284691	0.0418721147363561	0.207309115933326
Merged-chr15-27709426-4	chr15	27709357	27709557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27915.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	6.91470253045514	6.90431797448674	6.64567663185161	6.87605687815137	6.50161213939868	6.95736667292177	7.01368502496989	6.57586000500938	-0.0980281624227215	0.659726301640926	0.858504937170606
Merged-chr10-8342844-3	chr10	8342759	8342959	+	892.349976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 2 of 7)	L2c|LINE|L2	175966.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	3.52632243866016	3.720078630361	3.57859854891613	3.72902946389776	3.36936030627455	3.40826365841313	3.28499294355015	3.22989491808542	-1.11442374867463	0.031517589776357	0.173076001507588
Merged-chr2-18694299-8	chr2	18694181	18694381	+	997.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4741.0	NM_001001334	381350.0	Mm.330024	NM_001001334	ENSMUSG00000037708	Spag6	Spag6l	sperm associated antigen 6	protein-coding	4.78493439132652	5.03413690668281	5.30791866604518	4.75866896969479	5.14406360354524	5.23184563634391	5.22315167570888	5.67209981834855	0.66108425036661	0.0471940243409352	0.223635141372973
Merged-chr4-95157859-4	chr4	95157745	95157945	+	939.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105623.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	4.84396175200195	4.69758482350044	4.72940557584303	5.06802615400068	4.94068221634964	4.69119628701927	5.27498775062883	4.72634185277643	0.150037553340153	0.67223778107253	0.865098520982242
Merged-chr5-100663200-4	chr5	100663109	100663309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027978, intron 3 of 6)	intron (NM_027978, intron 3 of 6)	11047.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	7.43190190608367	7.55169260777812	7.54499895433715	7.71011626632069	7.2289170230569	7.47701499233172	7.51669790328327	7.48516818029648	-0.195018997889771	0.28292286320696	0.595081897113212
Merged-chr15-36903526-3	chr15	36903427	36903627	+	782.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103875.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	3.81290169177367	3.97581092563374	4.34519059341431	4.19224108303449	3.73816786605265	3.87738145502544	3.90270017926399	3.91666506222221	-0.67812155038556	0.130376251495293	0.40193242336713
Merged-chr12-69130100-2	chr12	69130000	69130200	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29086.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	3.10871150201931	3.12023080467773	3.0439766319532	3.19449460699483	3.49483105641507	3.21895130515781	3.27415964857065	3.39113992521326	0.849043224906555	0.116723897526446	0.378058049387613
Merged-chr8-43351163-4	chr8	43351062	43351262	+	924.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44153.0	NM_009556	22702.0	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	4.29233890396191	3.98759202711713	4.09179071761792	4.79598642669727	4.60416671276138	4.32354409168251	4.48633581307064	4.68746961935763	0.40290423413426	0.365973469757288	0.670587077275756
Merged-chr5-25529778-4	chr5	25529662	25529862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027388)	promoter-TSS (NR_027388)	-256.0	NR_027388	73571.0	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	9.333283581044	9.54722105680683	9.73005504400382	9.32330360528275	9.57809875454229	9.72137745227093	9.76114179490418	9.39970575712427	0.159019546635189	0.334155532660851	0.644805241742718
Merged-chr17-33779496-4	chr17	33779373	33779573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020581, intron 3 of 6)	intron (NM_020581, intron 3 of 6)	2102.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	6.77704613830233	6.34664697688273	6.25134655352772	6.2287553408478	6.06132064869561	6.11159041900623	5.82931033620856	5.88015986238538	-0.663241055198729	0.00930856340709392	0.0750112345469872
Merged-chr9-61443579-4	chr9	61443461	61443661	+	925.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71195.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	4.50133096128468	4.72772314296423	4.54361749691637	4.78723050254914	4.32009567813364	3.92126101431097	4.43883761508769	5.06704736920114	-0.316449160260934	0.480925848666436	0.756237807870056
Merged-chr6-5050042-4	chr6	5049932	5050132	+	887.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 3 of 15)	CT-rich|Low_complexity|Low_complexity	143914.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	4.27453923464808	4.0171968085759	4.48263238923842	4.50987012937189	4.33369900698536	3.97689381647506	4.21094165807272	4.62378031809501	-0.0777160454059176	0.855642131202885	0.945715901857588
Merged-chr5-140514117-4	chr5	140514015	140514215	+	981.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	B4A|SINE|B4	8506.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	4.97634448536453	4.90490846767676	4.66404635398947	5.07371997063904	4.81757982569486	4.96732807232605	5.11453810666959	5.38455475594485	0.303584229617201	0.370900468897938	0.675068605253279
Merged-chr11-96910260-4	chr11	96910196	96910396	+	918.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030248, intron 10 of 13)	intron (NM_030248, intron 10 of 13)	6218.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	4.11864560960992	4.29754273271322	4.30174679128597	3.70537771983891	4.21274981067963	4.3412925479738	4.23920905419319	4.42036929397579	0.479159145640318	0.266326722310342	0.578066256744946
Merged-chr1-152266577-3	chr1	152266467	152266667	+	647.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	120115.0	NM_025677	66637.0	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	3.2381600374748	3.18475081370206	3.51287012943116	3.45913404679124	3.0114679481228	3.46969421960719	3.28593742014107	3.40813554977779	-0.21834677133602	0.696335903321193	0.877172308963588
Merged-chr9-88939173-4	chr9	88939042	88939242	+	944.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17778.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	4.72651779703292	5.04962080714996	4.7636843762022	3.60102744833051	5.12259773590229	4.61941052683889	4.46377450347378	4.34136591476093	0.0546897234278689	0.914513964261791	0.968058497102853
Merged-chr8-94857989-4	chr8	94857896	94858096	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009090, intron 2 of 8)	CpG-14378	546.0	NM_009090	20021.0	Mm.292492	NM_009090	ENSMUSG00000031783	Polr2c	33kDa|RPB3|Rpo2-3|mRBP31	polymerase (RNA) II (DNA directed) polypeptide C	protein-coding	3.87347905266858	3.9955043601646	4.57681648867362	4.06999524059735	4.33628596286088	3.81830361661815	3.91200030947691	3.9257350778156	-0.331045116207895	0.486833031704739	0.7603696580653
Merged-chr2-31170486-4	chr2	31170402	31170602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178760, intron 4 of 17)	intron (NM_178760, intron 4 of 17)	18186.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	5.53906617360716	5.69342841585368	5.59395580061615	5.8553880633659	5.65876367225538	4.9643818171741	5.64200361989611	5.76226123069907	-0.230838464186574	0.448491301674363	0.733787116790339
Merged-chr2-17788427-1	chr2	17788327	17788527	+	854.0	f0_balb.idr	Intergenic	Intergenic	-57359.0	NM_028757	74103.0	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	3.27093868904993	3.2566365654841	3.62654229282538	3.47420404139265	2.98624286470267	3.38471922746729	3.0734111396388	3.20989584339519	-0.947157218252203	0.0973676187502567	0.341944431370857
Merged-chr5-112326776-3	chr5	112326667	112326867	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018783, intron 1 of 13)	intron (NM_018783, intron 1 of 13)	398.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	4.49800687290031	4.22962560041253	4.31820357833855	4.32146471820814	4.90981320940201	4.75252677260029	4.4357019335637	4.79443736328104	0.885384369849847	0.0150653681185304	0.105150735469981
Merged-chr1-161170824-4	chr1	161170704	161170904	+	943.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028664)	TTS (NM_028664)	-11490.0	NM_001195189	100502590.0	Mm.449990	NM_001195189	ENSMUSG00000049160	Tex50	4930469G21Rik	testis expressed 50	protein-coding	4.14705636447863	4.35501349154201	4.44838506899327	4.59855704347657	4.19138104701893	3.94173460589526	4.42742386503016	3.87821636894549	-0.676585633499066	0.11677532122536	0.37812531114093
Merged-chr19-45326642-2	chr19	45326542	45326742	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37092.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	3.26183748703787	3.7663448739302	3.38539870309931	3.0884434642142	3.43192171609202	3.61533310554043	3.58607490307835	3.38361024422493	0.369846800509217	0.501576247662185	0.769279682081713
Merged-chr11-88222135-1	chr11	88222035	88222235	+	771.5	f0_balb.idr	Intergenic	Eulor3|DNA?|DNA?	17747.0	NM_001291271	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	3.36210920356289	3.26177882732766	3.36264911296861	3.5934759877563	2.53058613677031	2.86051461855406	2.6649574377371	2.74930513909211	-4.19568027940963	9.64819772630017e-06	0.000266491682561242
Merged-chr7-44837092-4	chr7	44836961	44837161	+	968.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171024, intron 4 of 8)	intron (NM_001171024, intron 4 of 8)	773.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	3.94184602615044	4.11613694199419	3.78995461407329	3.25239188015701	4.13793769583197	4.11442532092318	3.82656440665377	3.67554715846391	0.39924278933162	0.448452034835731	0.733750945626106
Merged-chr11-69061117-4	chr11	69061025	69061225	+	932.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028005, exon 1 of 1)	3' UTR (NM_028005, exon 1 of 1)	1350.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	4.30033118414394	4.6341649655362	4.09972421670379	4.28915287974878	4.33171100940834	4.60608165150207	4.45466192552809	4.66109814027114	0.384867450053299	0.323022662433026	0.63451078156203
Merged-chr17-70967832-4	chr17	70967730	70967930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22686.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	7.4494355146107	7.8763253206748	7.97410762409465	7.64630349334465	7.89930259332153	7.79002127867304	8.04422589408163	7.70992802288946	0.154399523613537	0.416928701701985	0.710744672757979
Merged-chr6-99252963-4	chr6	99252860	99253060	+	939.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	13555.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	4.2802031153179	4.15219676775656	4.41275008002659	4.41295368660709	4.37921588686583	4.31076855962355	4.51097102641166	4.63697636472056	0.325817088497468	0.390566950674184	0.69058015678842
Merged-chr1-133129381-4	chr1	133129280	133129480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1786.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	6.15004007162272	6.33026227029572	5.95522314030366	6.20691634839169	6.32514632433489	5.95794400444497	6.27064774699259	6.22486008578307	0.0553137761349174	0.815675284054046	0.928928353845266
Merged-chr11-16638683-5	chr11	16638663	16638863	+	976.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113440.0	NM_207655	13649.0	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	3.8701648856797	3.58148209922348	3.5996976355917	3.72832957682397	3.96351540680409	3.94139121334477	3.90171104795073	4.00708050184548	0.72611915554031	0.100816712842485	0.348510888398419
Merged-chr6-116228971-4	chr6	116228879	116229079	+	939.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026585, intron 15 of 30)	intron (NM_026585, intron 15 of 30)	20946.0	NM_026585	28006.0	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	4.58447522205093	4.48590824170774	3.8960020795158	4.73103651873321	4.38199911400212	4.50780655297177	4.70647485429303	4.50346052480377	0.119626599935887	0.776971646093329	0.913015118902433
Merged-chr12-21336391-3	chr12	21336283	21336483	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291871, intron 11 of 18)	intron (NM_001291871, intron 11 of 18)	19991.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	6.50018206789482	6.85666276708251	6.1731923253734	6.41878510730712	5.81043938445329	5.9639429923747	5.42327877196542	5.88236933644245	-1.12314517655968	3.704863691756e-05	0.000870037917240185
Merged-chr8-35709797-3	chr8	35709702	35709902	+	957.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116757.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	2.96066669498821	3.09239109609482	3.1268148920862	2.37860636605554	3.70333283074648	3.8909240817298	4.36875752120663	4.39007453592555	4.46106851405202	0.000438153330500789	0.00692435966068287
Merged-chr18-9790797-5	chr18	9790679	9790879	+	912.0633539999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	L1_Mus2|LINE|L1	83131.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	3.19489119959502	3.14735349638896	3.2450611305535	2.71145592779629	2.66336868563136	2.89008161457034	2.62694998663855	2.70773285598712	-1.70838339009098	0.0145651871243439	0.102718265562635
Merged-chr7-12881112-4	chr7	12881002	12881202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153802)	promoter-TSS (NM_153802)	-76.0	NM_153802	243833.0	Mm.293823	NM_153802	ENSMUSG00000060397	Zfp128	9630016P15Rik|Znf8|mZnf8	zinc finger protein 128	protein-coding	7.78197130564226	7.55900310938181	7.40224426923895	8.06556436066472	7.62042348922182	7.61072989540874	8.05418509324821	7.40742742484024	-0.0535535881227861	0.812145724271837	0.927419976441895
Merged-chr17-35258289-5	chr17	35258112	35258312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4882.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	5.7111070797021	5.81007530688606	5.76164860533089	5.44310751094956	5.72897222075795	6.02889610152768	5.60556842022632	5.87339772347997	0.230062520183417	0.393132742975389	0.692334987189995
Merged-chr3-55080268-4	chr3	55080152	55080352	+	850.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040593, intron 6 of 7)	intron (NR_040593, intron 6 of 7)	25010.0	NR_040593	70970.0	Mm.251485	NR_040593	ENSMUSG00000106589	4931419H13Rik	-	RIKEN cDNA 4931419H13 gene	ncRNA	4.40508572680978	4.43771647407916	4.44840295086018	4.32264685304953	4.47327156103639	4.29549680538764	4.7864427500508	4.40300354296381	0.243442655496344	0.515466889728884	0.777533445789008
Merged-chr8-66332393-4	chr8	66332286	66332486	+	977.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 4 of 7)	Lx8b|LINE|L1	-53915.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	5.12869859733335	4.34513567535302	5.21622983615041	5.1594906964797	4.87315871428433	4.8433251627778	4.84094864515978	4.86093478610442	-0.306781053252009	0.40928934629134	0.704924233683108
Merged-chr10-26996182-3	chr10	26996088	26996288	+	959.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008481, intron 57 of 63)	intron (NM_008481, intron 57 of 63)	223676.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	4.36255096641705	4.53539478849424	3.95126526700452	4.45683607480904	3.8935253424707	4.27500552582013	3.93612705638205	4.00140498968741	-0.846732668808115	0.0524664586554625	0.23868453503961
Merged-chr8-31148985-4	chr8	31148858	31149058	+	807.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1358.0	NM_144927	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	3.51879996070335	3.54173349739869	3.6303143094697	3.44212967307661	3.58285669326415	3.69317048127065	3.81010553827271	3.77847001767526	0.591604764688014	0.207183340294768	0.511175781726586
Merged-chr7-19272247-4	chr7	19272181	19272381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282021)	promoter-TSS (NM_001282021)	-427.0	NM_001282022	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	5.56016976795957	5.44310875873104	5.18327858835375	4.93750311562597	6.13907675441883	6.08912366070448	5.29522692234561	5.9522363726269	1.05054248883663	0.00119572644597291	0.0155265456293641
Merged-chr2-46443311-4	chr2	46443211	46443411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	746706.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	5.98732641372813	5.4479458738618	6.21151395653447	5.90538260356886	5.85362136530598	5.48318756991161	5.63612453284517	5.52188550724665	-0.442259629346224	0.130578549594139	0.402217871800296
Merged-chr2-174086533-4	chr2	174086423	174086623	+	954.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102424, intron 2 of 8)	intron (NM_001102424, intron 2 of 8)	9472.0	NM_001102423	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	4.8906456084065	5.02421271508832	4.89144791600543	5.17271207612835	5.07572387179656	4.82913111844366	4.6728067946775	5.12122117716414	-0.136031934074307	0.682622414331636	0.869969330045886
Merged-chr3-121602267-4	chr3	121602183	121602383	+	983.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41202.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	5.03423466178315	5.24122580068796	4.96034316565064	5.33637387503804	5.32014027518913	5.5609849418051	5.33385680738852	5.74469497451773	0.59074646576097	0.0550617814211083	0.245259232776788
Merged-chr6-97279508-5	chr6	97279375	97279575	+	886.679077	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-26695.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	3.27078008531037	3.25671689011702	3.43332519121927	3.20549019824732	3.32540614953166	3.32321155632449	3.31479736767062	3.14911244937503	-0.0223016095432615	0.966400032402406	0.988139972127125
Merged-chr2-124577658-3	chr2	124577562	124577762	+	869.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-32634.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	3.63892182131286	3.74320163220574	3.53390581940045	3.51374436376236	3.67660613306354	3.53287103775068	3.46486842447004	3.41732401918575	-0.236667524653018	0.630804112028692	0.843092134650836
Merged-chr7-115034185-3	chr7	115034083	115034283	+	793.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82909.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	3.54548459113053	3.461008465687	3.59786326135836	3.5207779192908	3.5607675316832	3.60711361047877	3.58295926666652	3.18069923877518	-0.113744414670761	0.823157630878616	0.932185203682946
Merged-chr4-93334710-4	chr4	93334623	93334823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026954, exon 1 of 1)	3' UTR (NM_026954, exon 1 of 1)	788.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	8.09807956857688	7.81504718909449	7.79306557531202	7.96398630946524	7.57297315447272	7.49885830571643	8.04869125563784	7.54131190405514	-0.310892614996585	0.113534425863054	0.372557114452502
Merged-chr10-10557495-4	chr10	10557381	10557581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 1 of 2)	URR1B|DNA|hAT-Charlie	726.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	6.29692761437745	6.87603558415239	6.62597690240639	5.84452249956264	6.42477316882633	6.54695786133741	6.12795406181075	5.79610075245175	-0.303373163338278	0.330808738797113	0.642094846510006
Merged-chr2-91526725-4	chr2	91526629	91526829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165989)	promoter-TSS (NM_001165989)	-33.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	6.72663800260877	7.18632694987089	6.48442784657965	6.79093106830496	6.9228996187764	6.79597867047916	6.72294636393886	6.8900662474108	0.0156963960107568	0.944749195440651	0.980138217759624
Merged-chr7-29156182-4	chr7	29156093	29156293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146023)	promoter-TSS (NM_001146023)	17.0	NM_001146023	73833.0	Mm.260890	NM_028661	ENSMUSG00000030590	Fam98c	1110006G06Rik|AI836081|AV026483|B230110F21Rik	family with sequence similarity 98, member C	protein-coding	5.74625702431141	5.92070224187072	5.50226540187796	5.6513428093532	5.82690411835309	5.94657703929341	6.09715201370665	5.46811571009297	0.229707185952013	0.40647835959677	0.702950099801707
Merged-chr16-37854788-4	chr16	37854687	37854887	+	706.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	5S|rRNA|rRNA	-13613.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	3.25006267689716	3.14394101505643	3.18785208724063	3.17835675952996	3.44636963338337	3.36348323155874	3.55762076752648	3.57129058682175	1.05772716082823	0.0387145434196557	0.197538529467217
Merged-chr6-120466736-4	chr6	120466619	120466819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	3522.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	6.70001061647495	6.34620058318563	6.60250105664203	6.68569687791391	6.28192138070786	6.13813731400356	6.19346982805644	6.11738695461416	-0.60602094126493	0.00699201499060441	0.0608267703515315
Merged-chr2-150904717-4	chr2	150904617	150904817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024465)	promoter-TSS (NM_024465)	14.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	8.33929820359518	8.29602194840082	8.49602729432445	8.47670825979212	8.49886113426667	8.19957484990741	8.68682963573206	8.43580249252519	0.079298950514257	0.637326986654156	0.846727967430494
Merged-chr15-76537887-3	chr15	76537793	76537993	+	790.899963	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013909, intron 2 of 8)	intron (NM_013909, intron 2 of 8)	853.0	NM_013909	30840.0	Mm.275279	NM_013909	ENSMUSG00000022559	Fbxl6	AU021795|Fbl6	F-box and leucine-rich repeat protein 6	protein-coding	2.96379487449388	3.36644344661517	3.34853765381474	3.32238336518832	3.25435239761447	3.40457842438101	3.33549886172408	3.50310962978244	0.390282556883328	0.475901828976529	0.752603574391689
Merged-chr5-127610966-4	chr5	127610854	127611054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 1 of 7)	intron (NM_133895, intron 1 of 7)	6438.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	6.25702897032151	6.15503332749785	6.36401548456009	6.16971860238555	6.2772022804402	5.89412353474015	5.8437164390586	6.27192406594605	-0.20726067136052	0.398523726800539	0.696793179038619
Merged-chr2-104590321-4	chr2	104590232	104590432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177253)	promoter-TSS (NM_177253)	-152.0	NM_177253	228410.0	Mm.259876	NM_145529	ENSMUSG00000027176	Cstf3	4732468G05Rik|C79532|CstF-77	cleavage stimulation factor, 3' pre-RNA, subunit 3	protein-coding	9.2796821771896	9.47245819344811	9.48467110249006	9.417373057633	9.23620800307773	9.21517210547866	9.42138059119881	9.11183614360471	-0.203419370661713	0.161368824389555	0.450116449221105
Merged-chr11-50377110-3	chr11	50377012	50377212	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021510)	promoter-TSS (NM_021510)	-607.0	NM_021510	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	5.44305778816176	5.62171289862115	5.80400683286336	5.02709330352225	5.28500369451732	5.34334793574539	4.91647413337416	5.54665286354838	-0.355808977742243	0.294506355555398	0.60669911675381
Merged-chr10-127594694-4	chr10	127594603	127594803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 8 of 88)	MIRc|SINE|MIR	26445.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	7.78700197868956	7.96689164311872	8.22516051068163	8.0331465805124	7.34706117373677	7.79924335778089	7.78125274600237	7.75141037324867	-0.439828259896225	0.0219979859300801	0.136524077122432
Merged-chr11-3179733-4	chr11	3179662	3179862	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 4 of 32)	intron (NM_030207, intron 4 of 32)	13701.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	4.47828123929624	3.69595100508655	4.31610468998137	4.35632020540205	3.1502711813042	3.28149727704396	3.15119904144784	3.38527263632326	-3.66103193455768	4.38753062598786e-08	2.03984351683338e-06
Merged-chr11-44399891-4	chr11	44399786	44399986	+	877.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303244)	promoter-TSS (NM_001303244)	-177.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	4.68533692014618	5.34716217434179	4.79738784466063	4.35826295540686	4.57631720935871	4.89830382533191	4.5430529769522	3.98718346290265	-0.651191019358668	0.154070909611992	0.43919156088394
Merged-chr15-67977657-4	chr15	67977568	67977768	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	281188.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	5.56131460402859	5.34890396794199	5.63617819509655	5.62635204839178	5.26693804705964	5.25156715218426	5.3440750211082	5.17638500608964	-0.515422480088979	0.0669552736122594	0.275989057001499
Merged-chr6-38676882-4	chr6	38676778	38676978	+	937.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001101507, exon 3 of 5)	exon (NM_001101507, exon 3 of 5)	13809.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	5.3028227874772	5.45144999845354	5.24650828612509	5.62011104104006	4.64384460538321	4.60189687529628	4.81260944545758	4.94775872862736	-1.30658921229542	5.84028039681727e-05	0.00129085736076139
Merged-chr10-117877567-2	chr10	117877467	117877667	+	925.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31593.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	2.76826657586776	2.81550948699177	2.90651135050909	2.66860542053264	3.104093964965	3.08173877985858	3.13251693975878	3.29774393267465	1.61395497666586	0.00591553847044504	0.053706902141302
Merged-chr6-134225711-4	chr6	134225598	134225798	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 4 of 8)	intron (NM_001303102, intron 4 of 8)	-170631.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	4.59955534222835	5.07437263779403	4.40152080578039	4.8021942019765	5.5939347897709	4.82665014908009	5.10064182633331	5.26784746210847	0.938138820747018	0.0118909642946529	0.0893095861062673
Merged-chr9-94669867-4	chr9	94669782	94669982	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177909)	promoter-TSS (NM_177909)	-10.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	5.4807504406384	5.03853886468717	5.74434064084973	5.64088462782169	5.05898093741978	5.10521845473277	5.45399860880432	5.17978053262764	-0.540023080904128	0.0920895530329279	0.331880271178644
Merged-chr6-35148193-3	chr6	35148095	35148295	+	659.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-14458.0	NM_001164414	53621.0	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding	3.23620097982985	2.90156915312522	3.29381768781369	3.20540174572436	3.20318788337325	3.28873264959253	3.33490553317256	3.44938559177549	0.560437147107409	0.311124306139763	0.623202954459608
Merged-chr10-88330897-4	chr10	88330807	88331007	+	924.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 4 of 6)	intron (NM_027878, intron 4 of 6)	26168.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	3.71326280385447	3.81459204808439	3.52987177871836	4.10268071378142	4.03542585793296	3.77356710361573	4.20677478968549	4.06082177957625	0.55510864183279	0.251744805150831	0.563040416191876
Merged-chr9-120068879-3	chr9	120068785	120068985	+	829.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009987)	promoter-TSS (NM_009987)	-589.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	3.63103388219927	3.83986825371606	3.52590182354663	3.65794149576252	3.44895737823993	3.46239896957479	3.39880872969073	3.46783988158835	-0.748444612354206	0.131155101804312	0.403104428771734
Merged-chr16-94617514-6	chr16	94617436	94617636	+	999.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	6117.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	5.22681892716744	4.53844408360207	4.75052740849932	4.41995779869237	4.50431789173642	4.29393965260414	4.89564647809039	4.41845616689844	-0.457026088051697	0.272742791947037	0.584147535295124
Merged-chr18-26864270-4	chr18	26864173	26864373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-1110116.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	6.84137166709471	6.64837447496364	6.70932092750541	7.31557221527052	6.98357032577038	6.85563318238525	6.97765802609444	7.32090678585587	0.167370085086541	0.488061020752366	0.761126159857708
Merged-chr6-85588743-4	chr6	85588640	85588840	+	992.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145223, intron 1 of 22)	intron (NM_145223, intron 1 of 22)	1209.0	NM_145223	236266.0	Mm.246967	NM_145223	ENSMUSG00000063810	Alms1	bbb	ALMS1, centrosome and basal body associated	protein-coding	5.12063975819309	5.16244046916965	5.0466775713345	5.7330667263181	5.67597653598359	5.46838232660197	5.29681361489921	5.94400109479266	0.51512760020351	0.130708551629817	0.402410609652443
Merged-chr3-8923701-4	chr3	8923610	8923810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025434, exon 1 of 3)	exon (NM_025434, exon 1 of 3)	147.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	7.72831779918712	7.85496185320188	8.4362812325295	7.71603520216853	7.63122667283424	7.93188323947536	7.68370439109828	8.16525755679869	-0.126322618883087	0.579130717227891	0.815233759185512
Merged-chr14-122638367-4	chr14	122638248	122638448	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 7 of 24)	intron (NR_153443, intron 7 of 24)	104020.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	4.77113922509289	4.39211210112301	4.7374858041253	4.7610237130309	4.52671748613149	4.55190608345423	4.52843452429319	4.11901376478341	-0.514136180511074	0.176674272281528	0.471862633987926
Merged-chr15-82898913-4	chr15	82898816	82899016	+	993.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027799)	promoter-TSS (NR_027799)	-164.0	NR_045068	100504637.0	Mm.440928	NR_045068	ENSMUSG00000100199	Gm20324	-	predicted gene, 20324	ncRNA	5.02399306580595	4.67214642415625	4.88623718225525	5.20152533375664	5.05600214242551	4.90723316877248	4.86304998717233	4.98820776034722	-0.032985128110171	0.921518394908225	0.970895925504707
Merged-chr17-50675418-4	chr17	50675373	50675573	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 5 of 5)	intron (NM_013880, intron 5 of 5)	-23208.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	4.38454588156647	4.5144922127663	4.92541825858382	4.7898693332244	4.55579163874658	4.8554905235571	4.50124705509478	4.64208470668527	-0.0794526663051162	0.82954753619396	0.934573663797877
Merged-chr11-102434603-4	chr11	102434503	102434703	+	988.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008175, intron 7 of 12)	intron (NM_008175, intron 7 of 12)	4281.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	4.83088757085267	5.3046668790742	4.91214356787138	4.65796828708524	5.38446069001476	5.20109455173982	5.3405202602322	5.58823624602389	0.837597461975366	0.0103950467719193	0.0811926955095409
Merged-chr13-24323593-4	chr13	24323478	24323678	+	935.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3826.0	NM_001284519	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	4.92857200571059	4.70784368430022	4.63359540416237	4.94893506400645	4.75357835343532	4.53831763665317	4.57055828739122	5.08064454934926	-0.132411468368022	0.711058604253788	0.884240356833917
Merged-chr1-92895265-3	chr1	92895172	92895372	+	866.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347091, intron 4 of 17)	intron (NM_001347091, intron 4 of 17)	7634.0	NM_172850	241158.0	Mm.108280	NM_172850	ENSMUSG00000034212	Ankmy1	4930483I10Rik|ZMYND13	ankyrin repeat and MYND domain containing 1	protein-coding	4.05411089590772	3.40954088263782	3.41047475797615	3.50695203674412	3.70556948327895	3.59018663885	3.95575232627181	3.53100534337687	0.268893694533593	0.608034635135662	0.83032239482552
Merged-chr5-124862989-1	chr5	124862889	124863089	+	990.0	f0_balb.idr	promoter-TSS (NM_144819)	promoter-TSS (NM_144819)	284.0	NM_001081750	269704.0	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	3.86942171571563	3.76731783460282	4.01343724288331	3.92975548052035	3.63565791148142	3.99089012448289	3.7503551534431	4.21554915023814	0.0362808368903163	0.9375892379331	0.977363579296412
Merged-chr5-25663315-4	chr5	25663215	25663415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42482.0	NM_020570	57434.0	Mm.143767	NM_020570	ENSMUSG00000028933	Xrcc2	4921524O04Rik|8030409M04Rik|RAD51|RecA	X-ray repair complementing defective repair in Chinese hamster cells 2	protein-coding	4.9992092423721	5.10153367374481	5.5299306666556	5.25731811198647	4.91852325750773	5.24628113648818	5.11333097240927	5.22961662412823	-0.21097513801529	0.504075136076859	0.770626277304553
Merged-chr7-30972790-4	chr7	30972719	30972919	+	789.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038860)	promoter-TSS (NR_038860)	650.0	NM_001164185	54135.0	Mm.4067	NM_017405	ENSMUSG00000001247	Lsr	ILDR3|Lisch7	lipolysis stimulated lipoprotein receptor	protein-coding	4.19874622793232	3.81784357253327	4.11221506918433	4.11924618917944	3.92580457143614	4.03954366096521	4.00157480269345	4.15395968490105	-0.111309407094448	0.79261044692331	0.919627897475503
Merged-chr15-59726018-4	chr15	59725914	59726114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68945.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	6.28217889915643	6.37781213467802	6.4641232241442	6.6803592501286	6.16959812159927	6.5531160102785	6.32623330254478	6.66115622790628	-0.0598484547959289	0.802512714960031	0.923936032101707
Merged-chr7-33982473-3	chr7	33982385	33982585	+	849.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	31457.0	NM_001276475	233099.0	Mm.110829	NM_001100464	ENSMUSG00000066584	Scgb2b27	Abpbg27|Abpbg5|Scgb2b5	secretoglobin, family 2B, member 27	protein-coding	3.54746781308994	3.64419934153705	3.44443869031389	3.10874998208826	3.32206360530658	3.38574877254672	3.48248915262624	2.99896523713016	-0.479956106683477	0.407251850282047	0.703586879884121
Merged-chr19-34262529-4	chr19	34262501	34262701	+	895.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-7228.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	4.52525475076942	4.1849215114541	4.32528212194763	4.39099651204589	4.02058472615263	4.26430059156186	4.42876096926232	4.36527694985186	-0.221567596809615	0.577280643516307	0.8140069915182
Merged-chr1-195131624-4	chr1	195131494	195131694	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355061)	promoter-TSS (NM_001355061)	-24.0	NM_001355061	12946.0	Mm.301652	NM_013499	ENSMUSG00000016481	Cr1l	Crry|Mcp|mCRY	complement component (3b/4b) receptor 1-like	protein-coding	4.75642605797362	5.17996945041562	5.02497276611146	5.19970005481343	5.27283901429198	5.19870785415488	5.06744108271508	4.95065515224486	0.12813816439247	0.688784782433192	0.872980495973815
Merged-chr10-128093328-4	chr10	128093233	128093433	+	966.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054078, intron 1 of 29)	CpG	550.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	4.74786912634185	5.43270270845812	5.64168840624155	4.87835111927765	5.18120903584883	5.33876672601494	4.63599407531943	5.42149166048819	-0.0842796446724085	0.828620943069939	0.934199261424475
Merged-chr16-87664078-4	chr16	87663974	87664174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34880.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	7.10374641360384	6.84769650995246	6.737746456334	7.19854179763995	7.12321830093975	7.04473364729021	6.97515888468373	6.55332733068394	-0.0663263909640881	0.769858670454995	0.909883669779186
Merged-chr2-36214686-4	chr2	36214588	36214788	+	950.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-15738.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	3.7781233914727	4.03445437864556	3.77862021328055	3.88263444720272	4.28141387457872	3.71325856774531	4.19496075680346	4.36566118165215	0.769892658231981	0.086521113712069	0.320821335325659
Merged-chr7-118117690-4	chr7	118117588	118117788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-1541.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	6.39561613221717	6.51667570152383	6.24131597880682	6.38517212685461	6.91514558835175	6.90717822519629	6.56531969190091	6.49730968824957	0.507460849680271	0.0228875843247216	0.139886258341865
Merged-chr1-121427102-3	chr1	121427013	121427213	+	946.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3954.0	NM_001025156	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	3.63813622610941	3.50263799607461	3.83690219264128	3.89631949211731	3.13051255296771	3.58386635015652	3.62387490999703	3.879490377204	-0.477308124439598	0.382969881220762	0.684806641597061
Merged-chr18-32390228-4	chr18	32390122	32390322	+	868.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	intron (NM_001360876, intron 1 of 17)	-11938.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	3.89527357923594	4.4335470371111	4.24211982280824	4.28062922042335	4.17593237404227	4.12758834485077	4.13434117484539	4.14975084455161	-0.216192807402039	0.60020730753466	0.826747091301587
Merged-chr1-151270829-4	chr1	151270717	151270917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-73669.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	5.36280054764218	5.20158931095563	5.4816772598217	5.65634947771498	5.5474894705432	5.71061096911705	5.66007348467261	5.53289843838218	0.270597659758009	0.337930460664932	0.647715215954039
Merged-chr1-75180432-4	chr1	75180309	75180509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023732)	promoter-TSS (NM_023732)	-17.0	NM_023732	74104.0	Mm.28663	NM_023732	ENSMUSG00000026198	Abcb6	1200005B17Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 6	protein-coding	7.09240934454385	6.84989757020784	7.16237455278304	7.31905927061443	7.00163797135928	7.02483314685498	7.43036070406093	6.67413635550793	-0.0854569854006975	0.71151997765747	0.884448333793459
Merged-chr1-180290026-6	chr1	180289944	180290144	+	918.477783	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33744.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	4.33148994388426	3.99120275095085	4.44894740232851	4.05760668095528	4.33075909064134	3.96353236507955	4.22875710141816	4.15495188687591	-0.0631486873047987	0.881005368556079	0.955322489265647
Merged-chr7-114069873-2	chr7	114069773	114069973	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	47908.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	3.20576396194804	2.87073139412957	2.9476978868507	3.173074949816	3.26600015488045	3.25803256420763	3.50104887570618	3.36927903197604	1.06929902216354	0.0616077769038207	0.262652791068361
Merged-chr1-132367820-4	chr1	132367756	132367956	+	927.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311108)	promoter-TSS (NM_001311108)	92.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	4.17563490260966	4.19340596262863	4.26310348806255	4.3447056189507	3.98391154082369	3.87559069345372	4.20158414270977	4.12802629979153	-0.518206084985746	0.206546317000362	0.510555465287703
Merged-chr3-83841686-4	chr3	83841592	83841792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011905)	promoter-TSS (NM_011905)	-84.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	8.17892502526661	8.11970145218999	7.92717064022313	7.71264454347703	8.11325289510816	8.34609045344121	7.99886907602803	7.70227019467245	0.0893169387912658	0.658708565616434	0.857995155933081
Merged-chr11-83020116-2	chr11	83020016	83020216	+	982.8000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_181545, intron 1 of 5)	intron (NM_181545, intron 1 of 5)	606.0	NM_001167743	276950.0	Mm.491599	NM_181545	ENSMUSG00000035208	Slfn8	-	schlafen 8	protein-coding	2.59721438019569	2.7747059556984	2.98662065982945	2.81185063246455	2.81834384405584	3.03830335186095	2.85898017951185	2.86784224558552	0.429471224304332	0.491394662731055	0.762973206346307
Merged-chr10-88200697-4	chr10	88200577	88200777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027487)	promoter-TSS (NM_027487)	-420.0	NM_026070	67282.0	Mm.208465	NM_026070	ENSMUSG00000020056	Washc3	2900091E11Rik|5730495F03Rik|Ccdc53	WASH complex subunit 3	protein-coding	4.82379808041626	4.51345193415186	4.75675952021949	4.71421226185087	4.60345217650897	4.5720669032654	4.33038151502691	4.34645197402219	-0.508717385977687	0.162107551080289	0.451186884270896
Merged-chr7-99982449-3	chr7	99982349	99982549	+	978.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1991.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	4.30897868640533	4.42120949000034	4.91015518602213	4.59110621843575	4.20355120502818	4.1874831764019	4.09793301505911	4.16388259266381	-0.986857812459494	0.0147373701598678	0.103532443081496
Merged-chr5-99202816-10	chr5	99202631	99202831	+	896.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50196.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.62154972662603	4.20680040781747	4.00102541045428	4.31804242024553	4.5004494120579	4.56319382770542	4.09314745670051	4.50929567255911	0.293023831694523	0.476151324141474	0.752752032426828
Merged-chr5-24540909-4	chr5	24540803	24541003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310476)	promoter-TSS (NM_001310476)	75.0	NM_001310476	117590.0	Mm.207071	NM_080444	ENSMUSG00000038204	Asb10	Asb-10|BB137407	ankyrin repeat and SOCS box-containing 10	protein-coding	5.74027566092483	5.60130093833488	5.76534844079568	6.08629779523249	5.34860303994305	5.70670975084913	5.68776782796269	5.63617094454718	-0.392741587676229	0.161928992816248	0.450986986551208
Merged-chr9-42471398-4	chr9	42471296	42471496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173038, intron 1 of 7)	intron (NM_173038, intron 1 of 7)	862.0	NM_173038	272589.0	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding	5.60662971791799	5.54582710149584	5.06857266601776	5.87814277275795	5.49908194144914	5.36132864550524	5.74733548361609	5.77271230030939	0.0493646521248041	0.874907316831877	0.952974613103639
Merged-chr9-122351686-4	chr9	122351606	122351806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026179)	promoter-TSS (NM_026179)	90.0	NM_026179	67469.0	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	8.23074864864401	8.36357993790536	8.00461421762316	7.81162999584173	8.33720884733125	8.21649188228325	8.39989184826635	7.95698730149476	0.161079043930923	0.407587308760435	0.70380769632612
Merged-chr2-101699412-4	chr2	101699222	101699422	+	896.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009424, exon 8 of 8)	3' UTR (NM_009424, exon 8 of 8)	20902.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	3.4264752697681	3.67816648701102	3.9642951573634	3.63066196231972	3.49410216387919	3.60215521629739	3.28933143340084	3.54102932878807	-0.64665075196933	0.208235687775801	0.512446688569828
Merged-chr3-146682657-3	chr3	146682565	146682765	+	634.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31348.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	2.86911183514657	2.76925375857929	2.98075582908273	2.88781363116758	2.65653466081181	2.7167042244868	2.60589452441344	2.68079828875675	-1.05687957710763	0.10371354392248	0.353927813925505
Merged-chr3-84843800-3	chr3	84843699	84843899	+	692.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 1 of 13)	intron (NM_001177773, intron 1 of 13)	-20346.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	3.73917341315915	3.14790800063524	3.24259287539454	3.67264922634234	3.38076537510252	3.65893314412987	3.4735629271013	3.69083725761372	0.231605076730534	0.676022891657476	0.867014726144001
Merged-chr7-67422026-4	chr7	67421927	67422127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49169.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	4.80605923554843	5.15101343269429	5.30063409214512	5.20202446658069	4.94159758144952	5.02296935933003	5.24658320272367	4.48808282086483	-0.344606561339727	0.32733463579643	0.638881023372017
Merged-chr1-131910404-4	chr1	131910308	131910508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175294)	promoter-TSS (NM_175294)	-50.0	NM_001145804	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	7.73964674635071	7.9192158099401	7.3514612471313	7.57452540025224	7.83524187398946	7.88605148136099	7.95431093184354	7.64483106786093	0.224946419201379	0.240211733090249	0.550714431334133
Merged-chr18-66459494-2	chr18	66459394	66459594	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021451, intron 1 of 2)	intron (NM_021451, intron 1 of 2)	890.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	3.39053898816354	3.47464530902864	3.44967778801201	3.71153513892434	3.49013835158371	3.50433233686254	3.43695006964337	3.75236555342175	0.0772400714308149	0.879104359647632	0.954746715269166
Merged-chr5-110840674-4	chr5	110840545	110840745	+	877.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153571)	promoter-TSS (NM_153571)	628.0	NM_016681	50883.0	Mm.279308	NM_016681	ENSMUSG00000029521	Chek2	CHK2|Cds1|HUCDS1|Rad53	checkpoint kinase 2	protein-coding	3.76468897043999	3.52934681689908	3.61648397549352	3.48158129036903	3.77490494045999	3.6785505036498	3.43610969462039	3.56070920876459	0.0991252998784337	0.838977217596893	0.938856878340637
Merged-chr11-54972575-4	chr11	54972469	54972669	+	871.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9629.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	4.09734169945166	4.87708682878023	4.20826986578608	3.92044922958539	4.92669053779819	5.00111191515112	4.59409897290302	4.57368038243997	1.00481300339104	0.0221298889103645	0.137032045476367
Merged-chr13-34002297-4	chr13	34002212	34002412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009068)	promoter-TSS (NM_009068)	-51.0	NM_001359997	19766.0	Mm.374799	NM_009068	ENSMUSG00000021408	Ripk1	D330015H01Rik|RIP|RIP-1|Rinp|Rip1	receptor (TNFRSF)-interacting serine-threonine kinase 1	protein-coding	6.80644483755357	6.47334084190876	6.97679219270731	6.85388154690316	6.58568245182645	6.8977675989138	6.95356712006382	6.80280517076964	0.0273563485234431	0.900595462507244	0.963161804192488
Merged-chr1-52766004-4	chr1	52765885	52766085	+	861.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38627.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	4.5197758068972	4.38743901366457	4.55726288454451	3.9832764832763	4.3751203614313	4.35576965077284	4.06254563773316	4.17788571722974	-0.27386432750586	0.517898712228544	0.779126927276672
Merged-chr9-116084852-4	chr9	116084738	116084938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	90525.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	6.69734407913583	6.31210786572001	6.90491589875118	6.74233890434775	6.29290396807921	6.32112927010595	6.15389171929356	6.18111877349643	-0.64996896143746	0.00536283818052489	0.05004214195747
Merged-chr1-37486623-4	chr1	37486499	37486699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024017, exon 1 of 1)	non-coding (NR_024017, exon 1 of 1)	2006.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	6.99299089903138	7.04656385752494	6.91700046673873	7.12816167997879	7.03263608621562	6.87783235924011	6.8553912101687	6.96407587222156	-0.128514133358685	0.500118521908527	0.768714895599853
Merged-chr12-70119789-4	chr12	70119704	70119904	+	796.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A2|LTR|ERVL	-7769.0	NR_104397	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	4.31662725024551	4.09783838875372	4.13664598718776	4.17884094802458	4.15782171126624	4.44510749495198	4.11903992407786	4.39597095675275	0.242038167628417	0.540998054373025	0.793009827469438
Merged-chr4-144892724-4	chr4	144892619	144892819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172424)	promoter-TSS (NM_001172424)	-108.0	NM_001172424	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	6.62948397216077	7.12065130773845	6.98610689494267	6.79645281336512	6.98145470980437	6.97633758071896	6.90046707401363	6.86451169419632	0.0541405605841029	0.792391737519761	0.919610988558604
Merged-chr3-84647781-4	chr3	84647672	84647872	+	952.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18420.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	4.24526396549085	4.74140541372635	4.51998366174052	4.6271542024859	4.51677760270644	4.31863146132205	4.94086033446286	4.6361428746094	0.155723158844808	0.688480449610111	0.872791361493391
Merged-chr4-126057993-4	chr4	126057931	126058131	+	919.5125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356446)	promoter-TSS (NM_001356446)	-534.0	NM_001356446	230751.0	Mm.38907	NM_172701	ENSMUSG00000042616	Oscp1	1810007P19Rik|5730415O04|6030436A01Rik	organic solute carrier partner 1	protein-coding	4.35112211881417	3.91775879236218	3.79397682226761	3.9673152251917	4.30759753243092	4.52259293215374	4.41063978851768	4.46691514273175	1.00204130061405	0.0144819101942592	0.102310921767904
Merged-chr2-102999318-2	chr2	102999218	102999418	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74195.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	3.81916412089614	3.91683255521317	3.62323612893947	3.5482493769614	3.8063106399677	3.50597989243219	3.44093785270649	3.25709075390768	-0.636982406418515	0.231168197987644	0.540694024187794
Merged-chr1-194672028-4	chr1	194671940	194672140	+	979.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008882, intron 3 of 31)	intron (NM_008882, intron 3 of 31)	52211.0	NM_008882	18845.0	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding	5.58380896898707	5.34548384923355	5.70376475023884	5.89742363085788	5.35169492858318	5.13250323707693	5.1503410752757	4.98759535876199	-0.866213432673299	0.00477970278866423	0.045937680906607
Merged-chr15-63497385-4	chr15	63497276	63497476	+	983.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17768.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	5.02766983431897	4.89611533480112	5.128254089132	5.40587947395266	5.0068061991816	5.23613981498424	4.82023496179312	5.18704654417358	-0.148216542348898	0.654072040479633	0.855416309539916
Merged-chr5-5360061-4	chr5	5359973	5360173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	20178.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	6.92682229834824	6.79149629536332	7.32496173314937	7.60381201536285	6.44548531497083	6.21205813928556	6.27130301562638	6.43609849901622	-1.22800072249114	1.2589277315674e-06	4.31435806476824e-05
Merged-chr9-95540652-4	chr9	95540572	95540772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19145.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	6.42228243345778	6.65983807243949	6.34807497800207	6.01057950831063	6.95602148649938	6.80250275883821	6.97613155728325	6.9116499710933	0.791154247891994	0.00059095190451897	0.00883684151507474
Merged-chr17-43076030-3	chr17	43075890	43076090	+	862.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	59435.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	4.18783975957577	3.93503745879121	4.14708547519828	4.24838285805501	3.90497515154791	3.8161247213533	3.79664465483203	3.69534136853747	-0.917617602241184	0.0382669445187391	0.196069885106488
Merged-chr5-32458949-4	chr5	32458844	32459044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172707)	promoter-TSS (NM_172707)	-26.0	NM_172707	19046.0	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	9.07868992839169	9.17954849913309	9.47761451397448	8.8954599542006	9.10830007529661	9.29492618437559	9.2485183119551	9.1013279176017	0.0230816106449843	0.892714551352558	0.959851546084039
Merged-chr6-66962737-3	chr6	66962642	66962842	+	940.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	65851.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	4.31792787637033	4.45003680998361	4.75810445873337	4.23086892721391	3.92251597995073	4.25698899044351	4.25496192476895	4.22521365664933	-0.688750404776667	0.0986465522407457	0.344228009704091
Merged-chr3-156560885-4	chr3	156560803	156561003	+	901.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177274)	promoter-TSS (NM_177274)	784.0	NR_040398	329782.0	Mm.183459	NR_040398	ENSMUSG00000085084	4930570G19Rik	C630015G22	RIKEN cDNA 4930570G19 gene	ncRNA	3.79459395803256	3.6052182285249	4.23058131940227	3.9219062701858	4.71247919020112	4.15858382967806	4.87601455850406	4.55439267641562	1.68438241997318	0.000171664834378008	0.00320370509863456
Merged-chr6-108827763-4	chr6	108827657	108827857	+	990.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138677)	promoter-TSS (NM_138677)	-884.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	4.87657521865422	4.52639075266103	4.80587641455786	4.85905333818583	4.88947999203581	4.97818079932748	4.85391306846467	4.60442890525702	0.126490817798689	0.71010011712874	0.883989795945789
Merged-chr1-88576005-4	chr1	88575910	88576110	+	872.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24493.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	3.91557110647829	3.86054392117721	3.86258465506748	4.05921480479327	4.41047146492776	4.0899780623676	4.13626348544248	4.01463133552553	0.636991113413565	0.135588461974639	0.409915525607069
Merged-chr9-7838256-4	chr9	7838170	7838370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1213.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	5.89243901397755	6.45076117782243	5.87006891844209	4.86702792985232	6.62050866736741	6.09357539230633	5.74215372973747	5.63344619879576	0.281271198735945	0.626716929158765	0.840727549606008
Merged-chr7-131410580-4	chr7	131410480	131410680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025826)	promoter-TSS (NM_025826)	-21.0	NM_025826	66885.0	Mm.334274	NM_025826	ENSMUSG00000030861	Acadsb	1300003O09Rik|2-MEBCAD|BB066609|SBCAD	acyl-Coenzyme A dehydrogenase, short/branched chain	protein-coding	8.41977161303797	8.71900441058787	8.3274173428137	8.36313582508694	8.85224468856839	8.88714116941854	8.60021393624138	8.65189990966136	0.362086808350283	0.0317189349207732	0.173711015520945
Merged-chr11-116592598-4	chr11	116592487	116592687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1100.0	NR_033223	11298.0	Mm.42233	NM_009591	ENSMUSG00000020804	Aanat	AA-NAT|Nat-2|Nat4|Snat	arylalkylamine N-acetyltransferase	protein-coding	5.80153682133659	5.8433970810173	5.41641515559797	5.71352938958196	5.94493836093528	6.02327322758582	5.74920792130437	5.79843398661741	0.288818602961561	0.265678940174467	0.577343448210064
Merged-chr9-21368421-4	chr9	21368321	21368521	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277322)	promoter-TSS (NM_001277322)	-111.0	NM_001277322	16201.0	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	4.64072457233853	5.26838464003678	4.76833439066171	4.83583798914899	5.07040176815656	4.9841074122467	4.66369827693858	5.33881344664047	0.263529666310636	0.465068485536773	0.745723070156486
Merged-chr3-144933857-2	chr3	144933757	144933957	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1328.0	NM_001033199	99709.0	Mm.440040	NM_001033199	ENSMUSG00000074195	Clca4b	AI747448|Clca7	chloride channel accessory 4B	protein-coding	3.14882908127777	3.04140738504099	3.26037363048004	3.11828551758513	3.24013121725801	3.07041272135809	3.29846551719224	2.82030425242597	-0.0684916936728181	0.907435002658861	0.965706537501571
Merged-chr7-114453388-4	chr7	114453286	114453486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 1 of 15)	intron (NM_011055, intron 1 of 15)	38132.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	6.21988410710397	6.06991536273465	6.22098421967878	6.26867151879889	6.74273808940502	6.63395838962964	6.521236610184	6.31323926939416	0.545500547606016	0.0152957681687274	0.106322019773618
Merged-chr17-35591024-3	chr17	35590964	35591164	+	857.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23579.0	NM_175148	69542.0	Mm.265291	NM_175148	ENSMUSG00000039269	2300002M23Rik	Stg|emprin	RIKEN cDNA 2300002M23 gene	protein-coding	3.55079941482589	3.91078906417509	3.55129450257425	3.60574830277276	3.25502459401105	3.43235713049737	3.36882419842445	3.43836924508012	-1.00042307633544	0.0530707896688149	0.240254769308438
Merged-chr19-55766137-3	chr19	55766037	55766237	+	707.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	24327.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.89055304937275	4.29856459316258	3.89114652393009	3.35416070940709	3.84307045203513	3.74653060383503	3.72360404855158	3.50241063084183	-0.542519336796293	0.311134309046482	0.623203873320601
Merged-chr6-124918024-6	chr6	124917867	124918067	+	898.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026988)	promoter-TSS (NM_026988)	-21.0	NM_026988	69202.0	Mm.142187	NM_026988	ENSMUSG00000030122	Ptms	2610009E16Rik	parathymosin	protein-coding	4.25137447379248	3.74226323796825	4.04017885305029	3.52770044619636	3.71147284979015	3.96428727710107	4.19237663222114	4.03763988880846	0.208366665446867	0.670114322426867	0.863876324048647
Merged-chr5-115516261-4	chr5	115516168	115516368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	9592.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	7.82561879130524	7.76867735062839	7.66946054504611	7.76582613148047	7.57979481984001	7.61737125206091	7.83251150373295	7.64733954372382	-0.116161783896095	0.48730704509999	0.760641831608346
Merged-chr16-26035192-3	chr16	26035096	26035296	+	725.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173379, intron 1 of 14)	intron (NM_173379, intron 1 of 14)	70588.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	3.87377021799863	3.48489072696503	3.96830095917039	3.85985897687283	3.89641691688291	3.78102019848819	3.95075520958933	3.82241113264683	0.162772083896878	0.723247867898544	0.889535016141386
Merged-chr10-15671905-4	chr10	15671814	15672014	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119863.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	4.84263069473697	4.99206638890825	5.29033096325268	5.26273256501821	5.21490795781647	5.27745832706547	5.347401643439	5.13284983702802	0.22640122671981	0.464018369995542	0.74519118175878
Merged-chr2-52423447-6	chr2	52423417	52423617	+	872.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182994, intron 1 of 5)	intron (NM_182994, intron 1 of 5)	1357.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	3.46611242811641	2.92076769177811	3.36638202844138	2.96717982048407	3.10192917715767	3.37213394098017	3.12735011953544	3.19774025727424	0.0311149899051507	0.958194551064105	0.985110633982061
Merged-chr2-94165024-3	chr2	94164939	94165139	+	947.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7130.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	4.12225816827846	4.31258414287872	4.39335528303208	4.59267483352736	4.03538077695297	4.29794037681584	4.15433381961244	4.39053031501611	-0.394576942056159	0.33443876127679	0.645017519886215
Merged-chr9-23597483-4	chr9	23597375	23597575	+	826.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	374399.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	3.92120303384365	3.6276926777699	3.75952010248651	3.86729694531535	4.37157765979342	4.0948532374055	4.09214556341044	4.06349642980266	0.983926034653379	0.0229499967472754	0.140178014724114
Merged-chr8-117252864-4	chr8	117252750	117252950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4169.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	7.39599590981785	7.19769596245546	7.18817291051179	7.36939007532248	7.4049345430795	7.24612448819781	7.20763667676282	7.26032327182018	-0.0110044046751559	0.951702751728581	0.982811735967285
Merged-chr3-100692481-4	chr3	100692373	100692573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7000.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	6.03679565009065	6.1146925049888	6.55077271784047	6.44523895642922	6.74121869463772	6.50584696062888	6.45354716463559	6.41468462674185	0.339496364095364	0.156396617591099	0.442290171016728
Merged-chr1-37314537-3	chr1	37314435	37314635	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	14697.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	4.21341171854303	4.52379636396911	4.85556979922551	4.88680050583879	4.09286399725517	4.12472998381004	4.64563289874906	4.11100177712208	-0.937767126604301	0.0318466623926926	0.174188042464369
Merged-chr19-4086514-4	chr19	4086407	4086607	+	879.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001160253, exon 5 of 6)	exon (NM_001160253, exon 5 of 6)	2988.0	NM_013878	29866.0	Mm.46268	NM_013878	ENSMUSG00000024857	Cabp2	-	calcium binding protein 2	protein-coding	3.41937699804887	4.26989857308373	3.90875695756236	3.76460962943441	4.06822046239848	4.13189675300641	4.28196977157513	3.79989137986842	0.548185777310329	0.273194171354992	0.584744787937963
Merged-chr3-60502424-6	chr3	60502286	60502486	+	913.694458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	1207.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	3.28242751370192	3.72213229691669	3.88092185217803	3.43826731902167	3.75463114053936	3.67400138491421	4.08194610475648	4.28590700048993	1.08386127783208	0.0357597868747578	0.18784809602997
Merged-chr2-121449191-4	chr2	121449110	121449310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011354)	promoter-TSS (NM_011354)	12.0	NR_110986	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	9.27814673146911	9.47264538846325	9.20071573553362	9.02147077108834	9.23300327451585	9.50964619611529	9.46892916032014	9.14400962628479	0.11786088100072	0.483960573457752	0.758178269135013
Merged-chr1-184729961-4	chr1	184729858	184730058	+	884.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008250, exon 3 of 4)	exon (NM_008250, exon 3 of 4)	2535.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	3.92582428093458	3.87013152985596	3.92637221750594	4.03714640026864	4.19407098519833	4.15102097552768	4.01039847241717	4.36384840378736	0.617870834424082	0.136874822660782	0.411427913943067
Merged-chr11-58225890-4	chr11	58225796	58225996	+	846.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10919.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	4.03696828589575	3.86128421673293	3.56011680260338	3.55372258914493	3.70258175165661	3.42035774567346	3.65622309612427	3.66894412331509	-0.432775573200227	0.38803118423308	0.688838578973624
Merged-chr2-84617962-4	chr2	84617884	84618084	+	991.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355064, intron 5 of 18)	intron (NM_001355064, intron 5 of 18)	31496.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	5.0176049615381	4.93510556010398	4.63777072156569	4.91205921042066	4.8688066391648	5.19014750698411	4.85617627656455	5.07913073873426	0.222905022828768	0.49520533200419	0.765570679090165
Merged-chr15-84350379-4	chr15	84350207	84350407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24188.0	NM_001162500	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	3.71622638760674	3.6312893419269	4.13516657568021	3.95842731008836	3.79325558778822	3.65722866081398	3.75547501483471	3.96359889451485	-0.230823859332388	0.623130386960619	0.838905975174858
Merged-chr7-4145991-4	chr7	4145874	4146074	+	833.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172736, exon 15 of 15)	3' UTR (NM_172736, exon 15 of 15)	3898.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	3.5997176909858	4.14598060234521	3.73284509579499	3.99823813012943	4.21250518685391	4.19468945953653	4.62911133854714	4.48344610065012	1.2372238861917	0.00680112118937883	0.0596398922186517
Merged-chr11-9335436-4	chr11	9335351	9335551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 27 of 61)	intron (NM_178259, intron 27 of 61)	143509.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	6.7975943211827	7.25462039721152	6.62202054471378	6.99151272438669	7.30458814597234	7.15746996800314	7.49159365225409	7.22196996628399	0.485212314000601	0.0243188955141071	0.145743526681678
Merged-chr6-120531332-4	chr6	120531226	120531426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144815)	promoter-TSS (NM_144815)	-27.0	NM_144815	214932.0	Mm.255322	NM_144815	ENSMUSG00000058979	Hdhd5	A930002G03Rik|Cecr5	haloacid dehalogenase like hydrolase domain containing 5	protein-coding	6.60908556914446	6.56947225517753	6.65717215504081	6.38856268955448	6.44571488216324	6.68825308229075	7.13088083032951	6.99867886997796	0.408120638478992	0.0853506439443674	0.318071910225975
Merged-chr16-95800797-3	chr16	95800694	95800894	+	951.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97919.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	3.28448818021399	3.51639751284722	3.34604224375969	3.78559907801034	3.53081504207011	3.39608249595072	3.39201054147066	3.45854556687105	-0.22474250184608	0.67442772415108	0.866144208984521
Merged-chr9-108827635-3	chr9	108827536	108827736	+	807.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001359573, exon 1 of 36)	exon (NM_001359573, exon 1 of 36)	1591.0	NM_001359572	107934.0	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3	protein-coding	3.42464836749081	3.38801889035189	3.05951252963234	3.24770684901765	3.47501823283605	3.36704853740299	3.30191775983204	3.47513127310378	0.435945954494536	0.40824548579761	0.704278459447095
Merged-chr11-44516450-4	chr11	44516353	44516553	+	911.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2511.0	NM_028862	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	3.96003409065739	4.47694797904449	3.78485681359811	3.98678342712054	4.41585945775308	4.38271875390325	4.4724389730299	4.11356137885402	0.675152795503233	0.12149667525572	0.386037489868177
Merged-chr8-70166891-4	chr8	70166855	70167055	+	819.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045484, intron 8 of 8)	intron (NM_001045484, intron 8 of 8)	-5453.0	NM_145597	234371.0	Mm.23488	NM_145597	ENSMUSG00000002342	Tmem161a	AI428876|BB161850|BC021367	transmembrane protein 161A	protein-coding	3.56903005301675	3.77556196830218	3.73981001091324	3.61490540547352	3.73835867529854	3.85981082110982	3.77621876769954	4.18172225895785	0.65065613510788	0.157899203217391	0.444708083164274
Merged-chr11-46849350-2	chr11	46849252	46849452	+	682.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	38553.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	3.6014374172445	3.27525582405258	3.25365319174583	3.88439638046286	2.86708663148181	2.88883578953162	2.77233664497198	2.93053347526554	-3.03474869330452	3.10084002275309e-05	0.000747376337529834
Merged-chr12-70234580-2	chr12	70234464	70234664	+	792.166687	f0_c57.idr|f1_c57bl6.idr	TTS (NR_045174)	TTS (NR_045174)	6723.0	NR_045174	414124.0	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	3.69639261586296	3.50369394893992	3.6969066081012	3.1023250374235	4.49762357370249	4.09980501146221	4.65239488676841	3.91802058491035	2.33200683223792	3.98506254451278e-06	0.000121322825857945
Merged-chr15-79075132-4	chr15	79075060	79075260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145139)	promoter-TSS (NM_145139)	-63.0	NM_145139	223691.0	Mm.206404	NM_145139	ENSMUSG00000033047	Eif3l	0610011H21Rik|D15N1e|Eif3eip|Eif3ip|Eif3s6ip|HSP-66Y|PAF67	eukaryotic translation initiation factor 3, subunit L	protein-coding	7.07045532728385	7.19735554552585	7.13991697895783	7.13823926958595	6.78254049411106	6.90124020207979	6.88785057016632	6.50076683495991	-0.502945753400625	0.0110212019139275	0.0845980945790407
Merged-chr16-76373771-4	chr16	76373670	76373870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173440)	promoter-TSS (NM_173440)	57.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	6.28364567560391	6.10109870420068	6.63208331968729	6.52387045588099	5.81503479043954	5.72239429431113	6.35664450528026	5.97274601426851	-0.637733912823853	0.0174646378848004	0.116790253664243
Merged-chr11-85792630-3	chr11	85792527	85792727	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_077059, exon 5 of 5)	non-coding (NR_077059, exon 5 of 5)	-16947.0	NR_046194	78420.0	Mm.488197	NR_046194	ENSMUSG00000085514	Bcas3os2	9530048J24Rik	breast carcinoma amplified sequence 3 opposite strand 2	ncRNA	4.23990326512881	3.75352647232027	4.43588686877095	4.96795155276927	3.51593655492208	3.65544411410357	4.0413874986585	3.66596185133679	-1.87857886170162	0.000554180678894046	0.00838179777907109
Merged-chr6-114224666-4	chr6	114224575	114224775	+	817.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172890, intron 6 of 13)	intron (NM_172890, intron 6 of 13)	-57960.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	4.16671678909257	4.4655671396344	3.95801044478033	4.55960905241965	4.08472641156575	4.43259752730485	4.40844144078414	4.16484985815253	-0.120839771872282	0.777546307369891	0.913253170065039
Merged-chr19-11698508-4	chr19	11698403	11698603	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033283, intron 1 of 5)	intron (NM_001033283, intron 1 of 5)	1448.0	NM_001033283	225923.0	Mm.297596	NM_001033283	ENSMUSG00000055933	Oosp3	Gm97	oocyte secreted protein 3	protein-coding	5.60615118015924	5.06743633686405	5.14939430802755	5.70102271708283	5.44913192638808	5.10542005090664	5.08979132484588	5.52913850104249	-0.195330290571623	0.556160044675385	0.801835080198288
Merged-chr19-34442252-4	chr19	34442132	34442332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32903.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	6.82681688297633	6.5443224665613	6.40269496125389	6.94524145569246	6.82824615895335	6.4839654026999	6.69654538575041	6.74037351861395	-0.0174686077892422	0.939307950837031	0.978065281293421
Merged-chr2-129381271-3	chr2	129381162	129381362	+	970.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-10123.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	4.26878646673354	4.1419581682933	4.21996239718239	4.26586865427914	4.9220194842955	4.66430471056309	4.51104316203655	4.60608791366018	1.0568732723213	0.00429113944005942	0.0423750019705868
Merged-chr19-5601921-4	chr19	5601870	5602070	+	882.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026616)	promoter-TSS (NM_026616)	97.0	NM_026616	68209.0	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	3.72356314687178	3.77111325809616	3.92901684683839	3.77735277171656	3.52796706916136	4.09879605239743	4.00215196210172	3.8784273195445	0.242661995445955	0.603520483820402	0.82815361886668
Merged-chr10-17788078-4	chr10	17787958	17788158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8161.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	6.76528189179495	6.92489887463463	6.79455800388339	5.88644646036049	7.24291153004676	7.23260134126883	6.44757653430444	6.3452515335735	0.341854405657248	0.287982605380051	0.599909680363683
Merged-chr16-45371216-2	chr16	45371117	45371317	+	774.799988	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	37836.0	NM_001358443	17470.0	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	4.17559280989085	3.80301938503446	4.05713596526132	4.18394249436706	3.40441052066632	3.32247460638325	3.27309900325175	3.87589032179561	-1.78872504485453	0.00102835087529994	0.013751077766856
Merged-chr1-184807839-4	chr1	184807736	184807936	+	897.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290273, intron 1 of 6)	B3A|SINE|B2	3464.0	NM_001290273	66112.0	Mm.272457	NM_001081361	ENSMUSG00000026621	Marc1	1300013F15Rik|Mosc1	mitochondrial amidoxime reducing component 1	protein-coding	4.4852362862762	4.3266173853106	4.2800073712031	4.17119815937524	4.33774506922994	4.26332731920321	4.30474701571126	4.32136991669842	0.000137062608407067	0.999714757635605	0.999831138264464
Merged-chr3-144825363-4	chr3	144825261	144825461	+	868.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_139148, exon 13 of 14)	exon (NM_139148, exon 13 of 14)	-5867.0	NM_030601	80797.0	Mm.20897	NM_030601	ENSMUSG00000028262	Clca3a2	Clca2	chloride channel accessory 3A2	protein-coding	3.86732504627988	4.31923244289042	4.29964745439443	4.28066248274182	4.0808777434365	3.86950405404446	4.35786304146356	4.02597090987181	-0.287189054673403	0.50784998648542	0.773126660502261
Merged-chr11-69849403-4	chr11	69849323	69849523	+	902.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168497, intron 6 of 7)	intron (NM_001168497, intron 6 of 7)	2779.0	NR_033133	70310.0	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	4.47903032642549	4.78357552076193	4.81109250995449	4.89162823920742	4.25182766513616	4.21765622423715	4.12917431189594	4.43414925622653	-1.14489846272167	0.00273975988229198	0.0297412488427117
Merged-chr7-101011986-4	chr7	101011829	101012029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008773)	promoter-TSS (NM_008773)	69.0	NM_001302347	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	6.41878500699003	5.89037250213037	6.37347392850494	6.39053432825558	5.43536159632179	5.47681819465475	5.77355211164474	5.52318447380833	-1.17872132937139	1.24810003733084e-05	0.000336637031289017
Merged-chr2-25365652-4	chr2	25365563	25365763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033293)	promoter-TSS (NM_001033293)	0.0	NR_149315	227620.0	Mm.33797	NM_001033293	ENSMUSG00000026956	Uap1l1	5730445F03Rik	UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	protein-coding	6.18086022375387	6.19878464094038	5.94688922580127	5.80767464356675	6.08084030157382	6.25594844983166	6.16962093537887	6.58573163472911	0.388947500621572	0.126890581787569	0.396224817769572
Merged-chr13-111789630-7	chr13	111789523	111789723	+	935.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	19370.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	4.13619509439428	4.16438816855353	4.30969468659466	4.32422028785331	4.09160611027338	4.16349770765043	4.1190312953694	3.93528328037809	-0.419652265761904	0.299700484586431	0.611944371554148
Merged-chr10-95261295-3	chr10	95261198	95261398	+	753.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	(CAAAA)n|Simple_repeat|Simple_repeat	62411.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	3.46306242893865	3.48808139974703	3.4043900542418	3.49630323113332	3.71366345864908	3.45614953703398	3.45062692898185	3.89718475720749	0.57781779042293	0.244703717768667	0.555808536831526
Merged-chr12-100609981-4	chr12	100609886	100610086	+	973.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153587, intron 5 of 17)	intron (NM_153587, intron 5 of 17)	-89164.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	4.73754459019678	4.59985432185461	4.39251432389311	4.928760688215	4.77691856778965	4.79386545178238	4.71602282123239	5.0067220502779	0.264070604978937	0.461942699046479	0.743501704400988
Merged-chr13-100892329-3	chr13	100892231	100892431	+	892.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58904.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	4.2395154023022	4.22338184592223	4.06866489289169	3.55202974458561	3.98694001977842	4.19423160747571	3.68602688468235	3.86836781615549	-0.255885397477594	0.602315873501952	0.827599363412438
Merged-chr6-113741631-4	chr6	113741530	113741730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024206)	promoter-TSS (NM_024206)	-949.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	6.22388345612885	6.52809374667342	6.22498338157679	6.20245987798382	6.18350392663792	6.51404471401272	6.50532661982483	6.2401653146075	0.0934588244466969	0.688998052419214	0.873078401014891
Merged-chr2-12418931-4	chr2	12418838	12419038	+	849.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355537, intron 1 of 13)	CpG	522.0	NM_001355537	66960.0	Mm.34059	NM_024185	ENSMUSG00000026767	Mindy3	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958|Fam188a	MINDY lysine 48 deubiquitinase 3	protein-coding	4.22461448996331	4.01133772994881	4.26806772025229	4.28161522920772	3.96029594028216	4.10993883868398	4.02133890918841	4.34669093137734	-0.235504428980627	0.569520204072266	0.809382816358399
Merged-chr2-152295448-4	chr2	152295328	152295528	+	900.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024196, intron 1 of 7)	intron (NM_024196, intron 1 of 7)	1556.0	NM_024196	67231.0	Mm.288733	NM_024196	ENSMUSG00000027465	Tbc1d20	1110028I04Rik|2810442O16Rik|AI414693|bs	TBC1 domain family, member 20	protein-coding	4.47367856860526	4.16906773226256	4.1623650473667	4.38157031154945	4.42337566622536	4.68266938594394	3.9864251528944	4.5480987508436	0.294948039778028	0.473029527927811	0.751004143563305
Merged-chr7-114016449-4	chr7	114016357	114016557	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145584, intron 6 of 15)	intron (NM_145584, intron 6 of 15)	101324.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	4.36089829254373	4.52870203148287	4.92122223928338	4.82169168575766	5.12729193902821	5.16154968523734	5.20354394764183	4.91788344314095	0.832393390771949	0.0162221126442154	0.110760072508643
Merged-chr13-73476413-3	chr13	73476324	73476524	+	897.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 1 of 13)	intron (NM_145376, intron 1 of 13)	9041.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	3.33041375533133	3.11103302404381	3.5350183199773	3.38164141564894	3.29922260174664	3.12845893638073	3.14257331110813	3.38317430438502	-0.374389110470055	0.497511163216308	0.767090702736496
Merged-chr15-31342701-4	chr15	31342595	31342795	+	990.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	25064.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	5.92476724597972	5.23456658567401	6.68963205014155	6.51763103018752	5.02509653227583	5.45090087064144	5.27467918478653	5.42988933612912	-1.49585969599213	5.89208601303266e-05	0.00130084612382646
Merged-chr9-123801761-3	chr9	123801663	123801863	+	796.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 14 of 17)	intron (NM_001110253, intron 14 of 17)	-4714.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	3.36874788177711	3.14631756250379	3.47157018006857	3.14882206163683	3.31345165092548	3.24691285225733	3.24575415846648	3.196833604025	-0.103450335871291	0.848736064368929	0.942835494743909
Merged-chr13-58366567-3	chr13	58366470	58366670	+	657.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11623.0	NM_175214	75050.0	Mm.385742	NM_175214	ENSMUSG00000060176	Kif27	4930517I18Rik	kinesin family member 27	protein-coding	3.65124290629388	3.63192128560003	3.25644639945896	3.65048992355976	3.61684729747741	3.49520306943049	3.42812393773841	3.38049941101365	-0.248288646157912	0.629135232316669	0.84198959671088
Merged-chr11-43613308-4	chr11	43613212	43613412	+	881.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11750.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	4.28604673615973	4.13897059713768	3.87300948456215	4.03608912592755	4.1048864190488	3.87890467149728	3.74831259994692	4.39380247092261	-0.0822704630189989	0.85628741410232	0.945893027699269
Merged-chr14-64882809-4	chr14	64882733	64882933	+	848.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 4 of 9)	intron (NM_177338, intron 4 of 9)	67024.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	3.67721362908316	3.72640445511778	3.36904286252861	3.99702200997843	3.67539909513097	3.79604120106361	4.0377167731412	3.87894873886577	0.356054553108623	0.480698224203324	0.756081526054677
Merged-chr5-143235153-4	chr5	143235059	143235259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289590)	promoter-TSS (NM_001289590)	-4.0	NM_001289589	231866.0	Mm.55211	NM_177681	ENSMUSG00000029587	Zfp12	C530015C18|Krox-7|Zfp-12|Znf12	zinc finger protein 12	protein-coding	6.28950557575251	6.51171527808964	5.8293946249051	6.35642645524119	6.08990112021682	6.44749764783655	6.01689696713468	6.40867808335124	-0.0456576296471672	0.860984025880761	0.94751417046935
Merged-chr7-127841639-4	chr7	127841553	127841753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009294)	promoter-TSS (NM_009294)	-155.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	7.5510112129684	8.08719970897973	8.11050389219405	7.8779366783748	8.10810059867066	8.11400180948555	8.43697130809635	8.12986918200685	0.357535885291504	0.061396483299735	0.262171713047683
Merged-chr12-88445645-4	chr12	88445558	88445758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361598, intron 5 of 9)	intron (NM_001361598, intron 5 of 9)	-68335.0	NR_045888	71818.0	Mm.490789	NR_045888	ENSMUSG00000113434	3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	6.08910184357354	6.10301066342185	6.09017560135733	6.47040910858448	6.38029805064076	6.08593145231469	6.16020188979922	6.0644919895109	-0.0456572349176912	0.85380788430811	0.944905950148447
Merged-chr15-25692519-3	chr15	25692433	25692633	+	616.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 2 of 40)	PB1D10|SINE|Alu	-60673.0	NM_001353142	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	2.9986630015625	2.88750249595153	3.10768547982166	2.82751766940981	2.50588802097534	2.78634454315734	2.86994771168612	2.8789386777169	-0.894799453839188	0.176659281474614	0.471860639217102
Merged-chr5-122391863-4	chr5	122391760	122391960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019824)	promoter-TSS (NM_019824)	-18.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	6.21061844856718	6.65159325444577	6.05757846772586	6.14044147739404	6.54363407097667	6.82163265287306	6.72423847798864	6.58143882060677	0.561772498049449	0.0186332604987967	0.122115537155313
Merged-chr1-72687022-2	chr1	72686922	72687122	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347063, intron 5 of 23)	L1_Mus3|LINE|L1	13542.0	NM_176980	319695.0	Mm.249056	NM_176980	ENSMUSG00000039342	Ankar	4932422E22Rik	ankyrin and armadillo repeat containing	protein-coding	2.7062571073119	2.61210144131134	2.70661179960504	2.31958691147173	2.37807331968872	2.99935393440049	2.63154034528723	2.76772572415933	0.582709490313312	0.41947809221177	0.712585168028008
Merged-chr6-65165188-4	chr6	65165090	65165290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20460.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	6.40996462571434	6.14011207087222	6.55988795976971	6.65113936744054	6.30601426066327	6.2265247539188	6.61612839233709	6.57068265696947	-0.0375151096476146	0.875845120458195	0.953343358207453
Merged-chr8-11477929-4	chr8	11477838	11478038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126558)	promoter-TSS (NR_126558)	9.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	6.71249141393983	7.11647226403547	7.03875601208658	6.39054206603237	7.13085012173295	7.250291127523	7.02673384127064	6.69335025120136	0.287942963400976	0.245085093747795	0.556182666166093
Merged-chr4-47272250-4	chr4	47272161	47272361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 14 of 39)	intron (NM_009928, intron 14 of 39)	64249.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	5.46973796033779	5.49206375567826	5.15997010345748	5.67562552217839	5.39539115756001	5.55941817617483	5.35841843363837	5.35160819414745	-0.112717192277651	0.697772813713054	0.87800480308191
Merged-chr6-83456627-4	chr6	83456561	83456761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347313)	promoter-TSS (NM_001347313)	-269.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	7.24644562483352	7.54028103457567	7.03757187947197	6.69310952102985	7.50226474308966	7.65886568417411	7.06377748326654	7.00694659638588	0.242823642645646	0.344179159676184	0.652662201795373
Merged-chr7-123123981-4	chr7	123123858	123124058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144925)	promoter-TSS (NM_144925)	73.0	NM_144925	233833.0	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	6.32897120687098	6.83065686405827	7.26128758765502	6.60969014550867	6.21931818839531	6.60136443478549	6.25833815144599	6.53957721272345	-0.562659133423069	0.0347839921926063	0.184643879504626
Merged-chr17-29837664-4	chr17	29837608	29837808	+	967.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081160, intron 13 of 15)	intron (NM_001081160, intron 13 of 15)	50174.0	NM_001081160	74762.0	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	4.75466180529142	4.99311369529942	4.39763754606868	5.15291334893124	4.99271033335236	4.47704121310762	4.77132427060266	5.23407647427162	0.0652740324810369	0.86908612303086	0.950890741040292
Merged-chr12-84285312-4	chr12	84285200	84285400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029880)	promoter-TSS (NM_029880)	4.0	NM_001252626	77219.0	Mm.246127	NM_029880	ENSMUSG00000072946	Ptgr2	1810016I24Rik|9130222H03Rik|9630002F03Rik|AI838763|B830026H24Rik|PGR-2|PRG-2|Zadh1	prostaglandin reductase 2	protein-coding	7.96411092270074	7.99529161854235	7.33149489255265	7.65459461072761	7.84360122815393	7.89061034709264	7.64225474443666	7.9997458916801	0.113681191314905	0.579176643028751	0.815251710931408
Merged-chr17-35919127-4	chr17	35919074	35919274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357740)	promoter-TSS (NM_001357740)	-98.0	NM_001357740	52040.0	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	6.54664012421124	6.79424530820196	6.02904464199068	6.36189697468224	6.94799135463246	6.60486310171944	6.69607848288179	6.75360697142221	0.432670601193961	0.0748283639499393	0.295048089828979
Merged-chr11-106789205-4	chr11	106789093	106789293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177088)	promoter-TSS (NM_177088)	-8.0	NM_001355677	13207.0	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	7.47892235039673	7.78540094692557	7.28635255823978	7.20161378577325	7.57592237208752	7.67618351708127	7.56862914051161	7.6427644088509	0.215535564633459	0.277501451975271	0.589655377937423
Merged-chr11-75530550-4	chr11	75530457	75530657	+	951.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1137.0	NM_001199284	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	4.798702622458	4.82492442390999	4.86960668471866	4.20672897186004	4.81808202487541	4.86055320660399	4.6249093354697	4.75975738431263	0.181202397358733	0.63310203199471	0.844432636352907
Merged-chr10-67127198-4	chr10	67127084	67127284	+	928.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207221)	promoter-TSS (NM_207221)	-74.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	4.81503488250851	4.35589089324627	5.19686790505173	4.40797681805397	4.5001567017808	4.54853113873635	4.64845497573473	4.50397888528886	-0.381681829991698	0.345775113943816	0.654102820724662
Merged-chr8-66440161-4	chr8	66440051	66440251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	46379.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	5.71834142810849	6.13485330621948	5.99514241756526	5.88771916633088	5.78047122418576	5.7036728668626	5.74046998786897	5.63588254169949	-0.362017901093774	0.155753398837523	0.441609163147605
Merged-chr11-79207887-4	chr11	79207776	79207976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35148.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	6.11672156984911	5.98899682660547	5.79669690106225	5.76217643087992	6.14349375109363	6.44441708497095	6.25576119286207	6.19189480489343	0.536655623417093	0.0260814039130657	0.152831830832971
Merged-chr2-164007101-4	chr2	164007007	164007207	+	964.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018753, intron 1 of 5)	RLTR26B_MM|LTR|ERVK	11910.0	NM_018753	54401.0	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	5.10832103122477	5.09358094290348	4.74083657557522	5.27072244198435	4.98995820820214	4.74160885785242	5.17589151361329	5.28415685599655	-0.0345748031838992	0.918273588185936	0.969889091028279
Merged-chr11-70670034-6	chr11	70669909	70670109	+	892.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172561)	promoter-TSS (NM_172561)	-593.0	NM_001167669	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	3.66969230722694	3.38762658739629	3.40707198570057	3.23727077155864	3.4515302835732	3.63568599758186	3.39429427663815	3.56928324142201	0.30543677290063	0.550676547518505	0.798673593705145
Merged-chr4-117544805-3	chr4	117544713	117544913	+	883.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5511.0	NM_001356404	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	3.60703562872385	3.26833279347417	3.37415609293398	3.56731805794339	3.56183404262715	3.72555770776394	3.78816638432732	3.84772123556641	0.824354301511668	0.0964525372396135	0.340309068512861
Merged-chr4-47352425-2	chr4	47352325	47352525	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009370)	promoter-TSS (NM_009370)	-797.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	3.18116077681109	3.08328361595338	3.56731671630495	3.18643763271258	3.49311873132093	3.47568682368882	3.40200629778568	3.24254912614726	0.523562294327534	0.333812445848813	0.644557528456154
Merged-chr19-37370060-2	chr19	37369960	37370160	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-6343.0	NM_010615	16551.0	Mm.42203	NM_010615	ENSMUSG00000012443	Kif11	Eg5|Kif8|Kifl1|Knsl1	kinesin family member 11	protein-coding	3.2005944122953	3.3231082088776	3.55941081547292	2.8472937373922	3.29061387521014	3.05098451259799	3.18887755613895	3.0757218767605	-0.35351345500278	0.563656342892799	0.806428731514002
Merged-chr8-124150145-3	chr8	124150032	124150232	+	888.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81262.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	2.7514942025862	2.89427157497289	2.83589073116276	2.32539852314867	3.52383102861194	3.66268539758551	3.65962278205528	3.84308595854964	5.02685384109093	8.3343356148005e-10	5.4275359078306e-08
Merged-chr10-120167673-4	chr10	120167561	120167761	+	850.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 6 of 11)	RLTR28|LTR|ERVL	33936.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	3.72935800977297	4.00907344493179	3.72983707583803	3.7518134516288	4.58117185710275	3.78914591064393	4.28886958215723	4.30664488860448	1.23155022576264	0.00683479183321692	0.059858614136339
Merged-chr14-16365049-4	chr14	16364920	16365120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009409)	promoter-TSS (NM_009409)	-186.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	8.68922846266455	8.53601233594622	8.74541863914258	8.77613242407012	8.74019480295697	8.55081947489012	8.78161560165467	8.44324081426883	-0.0656809141531248	0.680434248442827	0.868886983906137
Merged-chr5-134102086-4	chr5	134102004	134102204	+	976.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030719, intron 1 of 8)	intron (NM_030719, intron 1 of 8)	2356.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	4.92621867722976	5.05778385872239	5.18997101925994	5.05459285178725	5.12219864405016	4.9081765880565	5.00778559021838	4.95971593561707	-0.097443994804756	0.75249585299444	0.902553434256667
Merged-chr12-111538733-4	chr12	111538637	111538837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178041, intron 2 of 11)	CpG-3539	636.0	NM_173363	217869.0	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	7.41911152120487	7.3686282124024	7.34096321790187	7.16993058301705	7.38754099233218	7.42229843523853	7.6022470006914	7.25120702449624	0.137230784425358	0.457269617675544	0.740407569101255
Merged-chr8-86862451-7	chr8	86862359	86862559	+	964.371399	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	22799.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	3.73155011284324	4.19138988988367	4.1669782978288	3.84497075826217	3.93520742081476	3.79240420256926	3.71795213365316	4.07977944409623	-0.284234259715962	0.537125478816691	0.790964159230488
Merged-chr11-98710649-4	chr11	98710550	98710750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361995, intron 16 of 25)	intron (NM_001361995, intron 16 of 25)	9337.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	5.85041390674253	5.93454365579612	6.06524211317251	5.81463313282227	5.95761916869487	5.90505925766915	5.53723599993152	5.72511948001853	-0.183768035605567	0.476682743639654	0.753110052062842
Merged-chr8-115046627-4	chr8	115046544	115046744	+	906.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	606992.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	4.6193901748092	4.42365865657018	4.40941311304266	4.82617505005604	4.72234710599661	4.49095950297389	4.70932671918315	4.61713979348345	0.0924490040208301	0.801669195430997	0.923501741084705
Merged-chr8-56301464-4	chr8	56301342	56301542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 3 of 6)	intron (NM_008278, intron 3 of 6)	6890.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	6.58692400164961	6.47224720102564	5.98699517926969	5.55207831163714	6.60749863947875	6.58792990940513	6.55426589579504	6.33670079867529	0.485242931710714	0.0985701182678643	0.344079370711996
Merged-chr5-43233000-4	chr5	43232893	43233093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175937)	promoter-TSS (NM_175937)	-470.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	8.0842485566917	8.12058514536661	8.64866832801415	8.23598042802156	8.08685728518324	8.40766064984277	8.65057831928661	8.2766622680029	0.0990138278748331	0.623622880914592	0.839057402560226
Merged-chr6-85029859-3	chr6	85029759	85029959	+	976.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 1 of 21)	intron (NM_177077, intron 1 of 21)	39654.0	NM_177077	75914.0	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	4.01995077019743	3.77431772438058	4.11083281964264	4.38094005336113	3.96173934430041	3.6969653610139	3.80342711364536	4.06399345617911	-0.572688942485842	0.220213774759677	0.528003179119194
Merged-chr13-37595379-4	chr13	37595252	37595452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-230686.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.32961502150769	7.10529928020934	6.76901880597972	6.68839828664177	6.67386713222886	6.20624541127734	6.63515270462658	6.24617991141251	-0.415227076183763	0.107130850909731	0.361139798101052
Merged-chr3-87334860-4	chr3	87334775	87334975	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23006.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	6.07824298319743	5.98347042776779	6.04122460183928	6.49071189983664	5.27178748803898	5.33948889623119	4.9234960793691	5.3304131574797	-1.60167758575301	4.76238903671204e-08	2.18980677806283e-06
Merged-chr8-86809233-2	chr8	86809133	86809333	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63227.0	NM_009172	20437.0	Mm.324553	NM_009172	ENSMUSG00000036840	Siah1a	AA982064|AI853500|Sinh1a	siah E3 ubiquitin protein ligase 1A	protein-coding	2.70428884749695	2.59227762928144	2.58928467810511	2.27771344779249	2.1701269694255	2.49981380945595	2.31570273305505	2.2455940114673	-1.42832779256544	0.0725174845567631	0.289480232923888
Merged-chr8-126598478-4	chr8	126598374	126598574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5038.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	6.08519197514222	5.73665939940498	5.90670299844168	6.22182735379446	5.96619518572163	6.06012809014793	6.38275140968183	6.54791273426222	0.374245887337956	0.164088763316364	0.454038022239756
Merged-chr13-99287398-4	chr13	99287281	99287481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57297.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	6.32500042234986	5.94033086377091	6.17866144691489	6.3899845496593	6.10665868255616	6.04773127018882	5.93573822256089	6.23155151525912	-0.219955213090923	0.367070906155936	0.671471106644306
Merged-chr1-190169518-3	chr1	190169393	190169593	+	935.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360827)	promoter-TSS (NM_001360827)	22.0	NM_001360827	19130.0	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik|PROX-1	prospero homeobox 1	protein-coding	3.35902337837926	3.70803410241887	3.80435994262309	3.64969694680108	3.0200323178635	3.28301020359513	2.94216708987756	3.47057124090043	-1.64493299850287	0.00628948636447326	0.0561564663744157
Merged-chr2-127506240-4	chr2	127506137	127506337	+	839.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019789, intron 2 of 8)	intron (NM_019789, intron 2 of 8)	15155.0	NM_001291005	56461.0	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	3.70961236841346	3.8926930619652	4.0165678080185	3.82720685401787	4.0555570691302	4.04445218582052	3.51386835075432	4.14331078536694	0.276171385112792	0.555015088377945	0.801191516655959
Merged-chr11-43682556-4	chr11	43682480	43682680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164231, exon 1 of 4)	exon (NM_001164231, exon 1 of 4)	582.0	NM_001164231	70802.0	Mm.397449	NM_027557	ENSMUSG00000044950	Pwwp2a	4631424J17Rik|AI891583|AU024105|D930040F23Rik	PWWP domain containing 2A	protein-coding	5.307966258633	5.03569353526819	5.825624988722	5.4901513642256	5.12787785191698	5.74155315502832	5.68572660345475	5.53759345192003	0.15616914065733	0.634291950818672	0.845095562869841
Merged-chr4-108459879-4	chr4	108459774	108459974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175472, intron 1 of 30)	CpG	448.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	5.39317530081042	5.203316909991	5.72751735900007	5.3037487319395	5.90051393662568	5.99545891275766	5.81417368169973	5.96686179379751	0.853359409423848	0.00149505862126063	0.0186173508752118
Merged-chr5-140207307-4	chr5	140207265	140207465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152617, intron 10 of 16)	intron (NR_152617, intron 10 of 16)	-32447.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	6.016286942973	5.7319491028231	6.37383188802342	6.62540596145223	5.784568890123	5.90499626594674	5.98653547025852	5.92321994948736	-0.544044020408991	0.0587179483272109	0.255079941652887
Merged-chr2-75720138-2	chr2	75720038	75720238	+	906.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-15475.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	2.86043816277344	2.77066800676748	3.15497791530621	2.51211928392101	2.97005653970435	2.97108443623851	3.08806343368793	2.98491170067945	0.726960476291109	0.263715736576089	0.57581589661491
Merged-chr6-85374168-3	chr6	85374064	85374264	+	962.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177466, exon 1 of 5)	exon (NM_177466, exon 1 of 5)	470.0	NM_177466	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	4.56628924453882	4.21991458189331	4.80550077875806	4.321645945544	3.82692274020882	4.40232700490659	4.42839555726395	4.44624429246403	-0.465519176581431	0.285974528647773	0.59757930169056
Merged-chr2-129065964-4	chr2	129065854	129066054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027192)	promoter-TSS (NM_027192)	7.0	NM_027192	69737.0	Mm.33909	NM_027192	ENSMUSG00000027394	Ttl	2410003M22Rik|2700049H19Rik|AI848570	tubulin tyrosine ligase	protein-coding	6.2184307679915	5.66653726665431	5.65591427648489	5.9543287161366	5.98264053373412	5.77781014088751	5.82784582684908	5.82997499877993	-0.0540263688711296	0.83943789691231	0.938939437807551
Merged-chr7-88244656-3	chr7	88244540	88244740	+	883.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33445.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	3.90598348913302	4.12142884269376	4.30879557486607	4.43271316300538	4.15437783425437	3.73252645251802	3.78271815408426	3.79505748752409	-0.871039776252003	0.0630496711042593	0.266323217585311
Merged-chr1-74817024-4	chr1	74816920	74817120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	25001.0	NM_009518	22409.0	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	6.58430456987371	6.66644836206658	6.53616352966265	6.38518399799648	6.87910865915199	6.69612234349747	6.79857134192363	6.71795323396527	0.350048137583737	0.0889517967947049	0.325426600742717
Merged-chr13-45391275-2	chr13	45391175	45391375	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153789, exon 2 of 7)	exon (NM_153789, exon 2 of 7)	1533.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	3.5417688805235	3.26322975301813	3.43573976623549	3.59013977445508	3.45411583986777	3.23487915347557	3.79819104621466	3.12263170020633	-0.119781829554728	0.831727986961427	0.935593760512152
Merged-chr10-63377645-4	chr10	63377520	63377720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-4823.0	NM_001253685	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	5.70497590377783	5.80877949658163	5.43584887142229	5.43146527887116	5.64472753623447	5.72586809765631	5.72442763438409	5.43207759420407	0.067380189517357	0.806839843891754	0.92554367415935
Merged-chr4-32560015-4	chr4	32559926	32560126	+	913.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_026843, exon 5 of 5)	non-coding (NR_026843, exon 5 of 5)	11636.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	4.21536356180742	4.24010878139404	4.46808008268203	4.40641790566466	4.42205540861627	4.02505794665457	4.40884398964443	4.06622796813942	-0.20943528968044	0.60570640768208	0.829027524130425
Merged-chr12-117843740-4	chr12	117843636	117843836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146040)	promoter-TSS (NM_146040)	-125.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	6.64327582209709	6.23922322638892	7.04391179251213	6.7123639480949	6.64498232507512	6.41425095528489	6.30383701424503	6.78295908586075	-0.194373016111928	0.443400223907943	0.72990713266033
Merged-chr12-99616372-4	chr12	99616291	99616491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136760, intron 2 of 3)	MLTR14|LTR|ERV1	11583.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	5.69187618966306	5.32613513408837	5.71836682698207	5.95821336210064	5.96433071513312	5.91818453001141	5.89691785833067	5.6092168796132	0.242638723840471	0.389929928355396	0.690126622334056
Merged-chr8-72219709-4	chr8	72219616	72219816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026455)	promoter-TSS (NM_026455)	-14.0	NM_026455	67922.0	Mm.28327	NM_026455	ENSMUSG00000003039	Fam32a	2510049I19Rik|AW822030|OTAG-12|Otag12	family with sequence similarity 32, member A	protein-coding	7.5803099041653	7.58322357280321	7.2367643479666	7.3561471116766	7.46133944274282	7.55334614618241	7.49172297569917	7.45916164532508	0.0611034053684499	0.734557953423065	0.895080097126908
Merged-chr13-54504202-4	chr13	54504075	54504275	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176987, intron 1 of 9)	CpG	370.0	NM_176987	319719.0	Mm.376151	NM_176987	ENSMUSG00000043183	Simc1	4732471D19Rik	SUMO-interacting motifs containing 1	protein-coding	4.43075590085428	4.46222611695808	4.59442658309984	4.12389844346107	4.61193716518434	4.42298460885129	4.61005289261798	4.66554651857277	0.427971186247486	0.255352013977019	0.566892302503594
Merged-chr9-35114014-4	chr9	35113946	35114146	+	924.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-2682.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	4.56792495226413	4.51268634958955	4.39470007521775	4.33486942661761	4.54371487054039	4.89226177475928	4.5871405235848	4.82231021080817	0.584948055466479	0.101760819613029	0.350100699851891
Merged-chr4-128983932-4	chr4	128983857	128984057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-9267.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	7.81749081478385	7.39423810110547	7.63349954649607	7.77474065621781	7.40573363675942	7.05974963753489	7.42745521984238	7.50597377281909	-0.403056832313439	0.0402923193592699	0.202769160044787
Merged-chr13-59656781-4	chr13	59656667	59656867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035122, intron 3 of 9)	RMER15|LTR|ERVL	19017.0	NM_001035122	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	5.2389575889874	5.31951323503129	5.69982092309099	5.2682053598023	5.36303931630635	5.12979666312948	5.57730835539587	5.50019038955409	0.0329712916990573	0.912407136595226	0.967207481621882
Merged-chr13-20181540-3	chr13	20181437	20181637	+	628.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	91030.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	4.23994765358639	4.254682830684	3.70119103229745	3.91347111559956	3.6087845396396	4.28443117857972	3.85587224064944	3.97192701614316	-0.264967703649245	0.584409027026054	0.817596016641525
Merged-chr8-72273975-3	chr8	72273904	72274104	+	835.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33986.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	3.58333312437658	3.49083290151883	3.63405351285746	3.54448165886798	3.12262125313275	3.47505169273727	3.56889864249751	3.47521015905188	-0.507083611171864	0.330106309427503	0.641493857124064
Merged-chr1-162573914-4	chr1	162573821	162574021	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016796, intron 1 of 7)	MIRc|SINE|MIR	3093.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	5.11172089711774	5.3642275940599	5.00166213799407	5.23269328807709	5.43524206596683	5.77733377403943	5.22122780254723	5.52802383104086	0.550052973335947	0.0674018899633006	0.277077627819681
Merged-chr3-153566307-4	chr3	153566201	153566401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	Lx8b|LINE|L1	158832.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	6.71186390154848	6.56612665328297	6.34499531508436	7.04720351961507	6.67992871224648	6.53974120844412	6.80317588269697	6.69359644980346	-0.0431650703227588	0.856653656919899	0.946049844784594
Merged-chr3-60508189-4	chr3	60508092	60508292	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	MIR|SINE|MIR	7013.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	5.09996518212268	5.22824155006931	5.32174274526489	5.3705637053916	5.01785380622386	5.30971951499302	5.07614664080864	5.45491020842866	-0.0917217396899799	0.763449038095192	0.907189180190275
Merged-chr3-89909228-4	chr3	89909148	89909348	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	3948.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	6.1300409538622	5.82089266366225	5.66529295856281	5.76962662026078	5.05230153956569	5.40991581423507	5.16975850507069	5.11888760162096	-1.16546348551208	6.01870389692103e-05	0.00132346408612586
Merged-chr6-39462992-4	chr6	39462890	39463090	+	959.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172477, exon 19 of 19)	3' UTR (NM_172477, exon 19 of 19)	42612.0	NR_152168	621427.0	Mm.389742	NR_152168	ENSMUSG00000068601	Gm10244	Anmkrn1	predicted gene 10244	ncRNA	4.26150393673183	4.26746098814307	4.42588105291481	3.9677668331801	4.30309616621975	4.38953876958258	4.10629630471055	3.96699225344656	-0.0572468401929149	0.891839575714282	0.95952862608333
Merged-chr6-88904955-8	chr6	88904872	88905072	+	952.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011906, intron 1 of 11)	intron (NM_011906, intron 1 of 11)	2721.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	4.34704917111747	4.08551831484641	4.78606872987671	4.82493421438409	4.29294489293429	4.06613112970753	4.14256803660879	4.25467205993047	-0.854480733881733	0.0479999058876038	0.226031800423853
Merged-chr15-37906279-2	chr15	37906167	37906367	+	634.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	54589.0	NM_001357023	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	2.76818584367314	3.06536158751093	3.17460429783354	3.12178370969469	3.37114714616307	3.16228762178888	3.16271280737875	3.43511296978435	0.928019393580652	0.115193106451178	0.375505100872834
Merged-chr8-111095282-3	chr8	111095182	111095382	+	850.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198308, intron 1 of 17)	intron (NM_198308, intron 1 of 17)	537.0	NM_198308	319518.0	Mm.28350	NM_198308	ENSMUSG00000033624	Pdpr	4930402E16Rik|AU018056|mKIAA1990	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding	3.15320634113306	3.18835761985156	3.15361338538847	3.01411437477043	3.09473654958097	3.20420943322287	3.08324107155866	3.15196717504997	0.0416544177605709	0.939780296583599	0.978323821689871
Merged-chr7-123371626-4	chr7	123371525	123371725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1710.0	NM_001316713	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	6.59795711742102	6.49406872064359	6.50091549828662	6.33197348960103	6.76861238058286	6.95041831417744	6.46767610010471	6.69997913495594	0.37351606040748	0.0861679851183766	0.319961970511812
Merged-chr8-83535932-3	chr8	83535823	83536023	+	877.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5170.0	NM_146270	258267.0	Mm.377401	NM_146270	ENSMUSG00000047286	Olfr370	MOR267-16|MOR26716	olfactory receptor 370	protein-coding	3.89108123567747	3.94736618839313	3.61936691547569	3.97807267365732	2.95878661992079	3.17618369978064	2.97610776474393	3.13439898533561	-3.44967858471021	5.47879579194773e-07	2.0174609709004e-05
Merged-chr8-68348624-4	chr8	68348530	68348730	+	897.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028182)	TTS (NM_028182)	-19829.0	NR_038189	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	4.5324380631342	4.17641708183653	4.76954318616393	5.00013908842458	4.58650481746048	4.62112021490241	4.74667096810953	4.90235145299536	0.096172321161142	0.80925871866946	0.926376505400415
Merged-chr5-53937329-3	chr5	53937212	53937412	+	956.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H2|LTR|ERVL-MaLR	-61211.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	3.94006557887844	3.93196840567074	4.22918834462251	4.27025849235681	3.29911231802672	3.74836529258677	3.28776992423227	3.56595056333523	-1.98478400483115	0.000160014349830156	0.00301503793333255
Merged-chr11-62847974-4	chr11	62847876	62848076	+	749.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033669, intron 1 of 12)	intron (NM_001033669, intron 1 of 12)	853.0	NM_001291441	213980.0	Mm.482259	NM_001033669	ENSMUSG00000090173	Fbxw10	Fbw10|HREP|SM25H2|SM2SH2	F-box and WD-40 domain protein 10	protein-coding	4.07673408013837	4.20912323351005	3.98065971713261	4.19095253671111	4.10806598605512	4.15274366104803	3.91372717123622	3.87410274196459	-0.274063670195676	0.514389730411051	0.776966017760127
Merged-chr6-28621177-4	chr6	28621083	28621283	+	744.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 10 of 23)	intron (NM_019776, intron 10 of 23)	140835.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	4.01503346767492	3.64089956022053	3.67892187959797	3.75968319284758	3.85966015891998	3.68069902040222	3.60918589566159	3.92582719227281	0.00121337479453702	0.997926287457446	0.99906319748704
Merged-chr16-17704451-4	chr16	17704319	17704519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285886, intron 2 of 16)	intron (NM_001285886, intron 2 of 16)	18481.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	5.40186522083637	5.12566021748772	5.91728005011875	5.90781415764032	5.47774765997222	5.51805930596862	5.34554498623702	5.6203075255908	-0.254817392609457	0.423275866761308	0.715213125702152
Merged-chr7-97745413-2	chr7	97745313	97745513	+	978.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7166.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	3.1734153488379	3.14350336987914	3.32669104657688	2.89641106148752	2.86757466615485	2.83343226816259	2.71932881202012	3.11676753571182	-1.05539993938241	0.0994661841821792	0.345901090673409
Merged-chr13-74292344-3	chr13	74292232	74292432	+	775.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009644)	promoter-TSS (NM_009644)	-1.0	NM_001317351	11624.0	Mm.290446	NM_009644	ENSMUSG00000021575	Ahrr	mKIAA1234	aryl-hydrocarbon receptor repressor	protein-coding	4.20386422959277	4.30958882938131	4.36878548610756	3.84465347930082	4.09430302757717	3.91737122268126	4.30936191422625	3.90806311842692	-0.297176456120978	0.504931907590585	0.771129223660333
Merged-chr8-61894214-4	chr8	61894127	61894327	+	830.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 1 of 21)	intron (NM_001293772, intron 1 of 21)	8463.0	NM_001081390	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	4.28927662162627	4.14846679102787	4.15770668280107	4.17006858505961	4.30942475068756	4.32860373820054	4.0447558740384	4.05909676809106	0.0170372552162602	0.966008357207628	0.988022131369328
Merged-chr5-3386672-2	chr5	3386572	3386772	+	851.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	42779.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	2.88750089618688	2.67316307926562	2.66072131762452	2.45064733819754	2.55043104789407	2.63514186268511	2.45269928279459	2.38428516435557	-0.857079461640864	0.232055809086045	0.541638955728781
Merged-chr17-23967207-4	chr17	23967115	23967315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8015.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	8.47694119085911	8.76684696668683	8.85974672421145	8.58609037998136	8.47098398254809	8.53912247684664	8.63533928113489	8.48793679761969	-0.182635257579106	0.252270471140391	0.563584315159659
Merged-chr14-65328121-4	chr14	65328023	65328223	+	990.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30553.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	5.00082145708209	4.74677723043409	5.12600402852942	4.72065995912628	4.8719336127765	4.88319410969318	5.07118563648584	4.8224516782378	0.0423343309259696	0.898844937358552	0.962334488459371
Merged-chr3-126403009-2	chr3	126402908	126403108	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173451, intron 1 of 1)	intron (NM_173451, intron 1 of 1)	39156.0	NM_173451	271970.0	Mm.317021	NM_173451	ENSMUSG00000046561	Arsj	9330196J05Rik|D830047F08	arylsulfatase J	protein-coding	3.25606173758635	3.29966306302401	3.57600488723489	3.16571362443778	3.27653524080059	3.23984927148047	3.46429936919619	3.47676130789079	0.155258693185402	0.771839642402521	0.910562259162493
Merged-chr6-76409583-4	chr6	76409487	76409687	+	973.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-832890.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	5.45957134611706	5.57468250627097	5.48751128527244	5.97477385140367	4.65708508441572	5.06865536308741	5.31964411048825	5.24998276170778	-1.02589427633065	0.00202042839427532	0.023568022398578
Merged-chr16-87597724-4	chr16	87597621	87597821	+	941.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44391.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	4.9297362163978	4.93585777064421	4.70922959469489	4.96939949933386	4.93899399395109	4.57425179597228	4.47103121884565	5.14394239069653	-0.15724794689293	0.662088096831894	0.859804941424119
Merged-chr10-44638839-4	chr10	44638751	44638951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-180103.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	7.00954992077406	6.55676309026487	6.24522425335658	6.63995944723043	6.35252525935105	6.42358075612093	6.62955061494356	6.658819046605	-0.177261913878812	0.466579672287195	0.746420287776482
Merged-chr8-108749221-3	chr8	108749109	108749309	+	948.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	34565.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	4.31608881856241	4.35843841901988	4.60179277454579	4.48697682144024	3.89595387084783	3.63253159129091	3.76319321543087	3.71364595561204	-1.86335052811649	4.54784636693101e-05	0.0010418769119787
Merged-chr7-45150521-4	chr7	45150415	45150615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145954, intron 1 of 16)	intron (NM_145954, intron 1 of 16)	-3788.0	NM_029406	68845.0	Mm.181689	NM_029406	ENSMUSG00000003423	Pih1d1	1110061L23Rik|4933413A04Rik|Nop17	PIH1 domain containing 1	protein-coding	5.5440212348708	5.55690631444804	5.46156545847049	5.71805680431199	5.43681421705412	5.63627959490187	5.43436327529018	5.51392161279228	-0.144509088619924	0.592575523443044	0.822249511338918
Merged-chr6-119809320-4	chr6	119809222	119809422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155458, intron 2 of 18)	intron (NR_155458, intron 2 of 18)	38828.0	NM_053204	111173.0	Mm.288860	NM_053204	ENSMUSG00000030172	Erc1	4930404L01Rik|5033405M01Rik|9630025C19Rik|B430107L16Rik|CAST2|ELKS|Elks1|RAB6IP2A|RAB6IP2B|Rab6ip2|mKIAA1081	ELKS/RAB6-interacting/CAST family member 1	protein-coding	4.71427958567573	5.25340234949254	5.31824891146014	5.0243503044761	4.95099515979263	4.6159806807485	5.09112098341418	5.04870067661041	-0.298892263413113	0.38498298880689	0.6864232900049
Merged-chr6-91685967-5	chr6	91685773	91685973	+	969.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 1 of 14)	MIRb|SINE|MIR	1806.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	3.92010827567002	4.07665058866115	4.16694705673375	4.45510575177377	4.25585248512682	4.09598679875396	4.00828177054998	4.07158759588103	-0.183668595420852	0.67129568452379	0.864616305890251
Merged-chr17-17005094-4	chr17	17005023	17005223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58980.0	NM_001005358	449000.0	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	8.31553260292336	7.97397879970811	8.25238997044315	8.36955677588339	7.84849429397004	7.41652392893965	7.8666737836344	7.78510177194992	-0.635320104104503	0.000659202004064859	0.00961699927184517
Merged-chr6-34352178-3	chr6	34352070	34352270	+	624.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1976.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	3.20429031503213	2.93486046294653	3.03358014122258	3.47220538734557	2.78510337134672	2.9433984490265	2.89662191725464	3.14846506637702	-1.0050592733813	0.114046171754618	0.373536373059172
Merged-chr3-61364521-4	chr3	61364438	61364638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028712)	promoter-TSS (NM_028712)	31.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	8.56911264129147	8.6339198946273	8.61254313170599	8.65797312299991	8.65681276289405	8.8444544900606	8.82179567144217	8.54581752389207	0.126147728105297	0.401723959165519	0.699264151654173
Merged-chr19-42144749-4	chr19	42144661	42144861	+	915.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2628.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	4.42228661733592	4.67725521153734	4.50932748457786	4.60858965500235	4.48650874232836	4.45936263199122	4.40338361492737	4.8350480659918	-0.0179035583696585	0.961036439418995	0.98607960708679
Merged-chr17-10232647-3	chr17	10232552	10232752	+	795.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021881, intron 4 of 6)	intron (NM_021881, intron 4 of 6)	86709.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	3.36847720540097	3.40852186919683	3.30595317270486	3.12263793282227	3.77908686391701	3.6037292579031	3.7688353759593	3.64302578408068	1.37887303340441	0.00521363070859902	0.049003171821916
Merged-chr10-60932073-5	chr10	60932056	60932256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033616, intron 1 of 2)	intron (NR_033616, intron 1 of 2)	5976.0	NR_033616	73616.0	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	5.89120852675678	6.03406405177958	6.35238994602581	5.89105966201231	5.85430210126268	6.38519829401548	5.86224065088063	6.33098356095131	0.117835691010213	0.664359845027292	0.860966272510256
Merged-chr9-123932533-3	chr9	123932430	123932630	+	922.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	36162.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	3.81592157391989	4.07017768077451	3.8164534437349	4.41218221553765	3.66170899622936	4.04012621547057	3.69220290212456	3.64555390529944	-0.859024791754842	0.0802987046902734	0.307157217387628
Merged-chr15-96735896-4	chr15	96735832	96736032	+	897.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36204.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	4.27145291408728	4.39681049076376	4.36259606320243	4.04369775249996	4.32868306175499	4.40060901873976	4.42654013874824	4.76662755433587	0.532496056082286	0.174113774750463	0.468411987790582
Merged-chr2-122738462-4	chr2	122738322	122738522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019788)	promoter-TSS (NM_019788)	-83.0	NM_019788	18457.0	Mm.268921	NM_019788	ENSMUSG00000005804	Bloc1s6	BLOC-1|Pldn|Stx13bp1|pa	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin	protein-coding	7.53385589985845	7.53977772328593	7.4509940038674	7.19504745123219	7.6317715025641	7.58906322627623	7.84233426303173	7.41650024591209	0.268329221733857	0.160532511538116	0.448715634744611
Merged-chr2-132048355-3	chr2	132048240	132048440	+	782.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-18352.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	3.5772957408999	3.39654727265114	3.23090181312496	3.53431884726545	3.54226056614745	3.47003379675044	3.51197181502777	3.57573873716511	0.259793053051432	0.605096272706236	0.828698063423653
Merged-chr8-94089890-4	chr8	94089816	94090016	+	871.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026116, intron 2 of 16)	intron (NM_026116, intron 2 of 16)	8895.0	NM_026116	67378.0	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	3.97126504927406	3.86018459736925	3.92248764678184	4.41644707340913	4.00907632488981	3.69671587997921	3.90635898347371	4.016945109757	-0.443202609463736	0.344479703012129	0.652915970479425
Merged-chr2-157078182-1	chr2	157078082	157078282	+	1000.0	f0_c57.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	1083.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	3.30132835321925	3.18202867135691	3.18407822383749	2.98415575859716	3.62613784156825	3.23293414621947	2.97688574401343	3.50683927998769	0.749471792459451	0.197076683002937	0.498379618699314
Merged-chr10-14148132-4	chr10	14148015	14148215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 9 of 9)	RLTR17|LTR|ERVK	181736.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	5.55367286654289	5.75151708558328	5.83108476917016	5.4801097940006	5.89866332429818	5.45358595067297	5.55435683102825	5.97550861391656	0.159891771752185	0.56999895592061	0.809738662478258
Merged-chr15-81466672-4	chr15	81466543	81466743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019712, intron 1 of 4)	CpG	327.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	6.62117291132332	6.65565314396395	6.35460896705563	6.65005814729463	6.9945408205631	6.90683495627635	7.04068095129376	6.97848528037065	0.56133275193968	0.00494721393178105	0.0471923012092647
Merged-chr3-127895129-4	chr3	127895025	127895225	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027482, intron 1 of 1)	intron (NM_027482, intron 1 of 1)	1198.0	NM_027482	70617.0	Mm.317049	NM_027482	ENSMUSG00000050549	Fam241a	2700063A17Rik|5730508B09Rik|C80506	family with sequence similarity 241, member A	protein-coding	5.26887918304092	5.46098088678713	5.64359836839713	5.08539684987599	5.41407527265449	5.17237265078084	5.30397723281828	5.16939926327501	-0.162149908618974	0.600099095918281	0.826731739315186
Merged-chr4-47378888-4	chr4	47378785	47378985	+	987.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312868, intron 1 of 8)	MTC|LTR|ERVL-MaLR	-7331.0	NM_001312869	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	4.88628735588237	4.97517390015358	5.47081164093042	5.53672436301261	5.3908002479029	5.25405037211284	5.12145028906737	5.44071489033779	0.0809715495063852	0.807017197188402	0.925584696333982
Merged-chr15-58214000-4	chr15	58213874	58214074	+	904.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026346, intron 1 of 8)	intron (NM_026346, intron 1 of 8)	918.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	4.02564705591813	3.781071073678	4.1478459751433	4.02771625973466	3.72776655979686	3.5471558379877	3.82409909516521	3.73322191913604	-0.849346023165037	0.0660225869648275	0.273619896219474
Merged-chr5-52742247-4	chr5	52742134	52742334	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025951, intron 1 of 9)	intron (NM_025951, intron 1 of 9)	660.0	NM_025951	67073.0	Mm.248647	NM_025951	ENSMUSG00000029186	Pi4k2b	2610042N09Rik|4933409G22Rik	phosphatidylinositol 4-kinase type 2 beta	protein-coding	4.7756664929419	4.86368624576556	4.94797651865474	4.892962749606	4.79517958560028	4.47390333119658	4.63963424217897	4.57513684775132	-0.49547706136579	0.147178510708749	0.427969035201497
Merged-chr8-119834046-3	chr8	119833913	119834113	+	722.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	(TG)n|Simple_repeat|Simple_repeat	6566.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	3.01966614648186	3.04794582327893	2.62369035471409	2.53566534523648	2.91441071243401	3.07292102221005	2.89000888274845	2.9601109619243	0.603399596483216	0.359788406669306	0.665475022577823
Merged-chr14-17435613-4	chr14	17435521	17435721	+	842.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-225339.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	4.31732382157938	3.93111027554884	4.18502921978201	4.22166585478891	4.33530681775348	4.40239678544148	4.37897057647615	4.08570010498927	0.331181783907295	0.408704766305803	0.704479738712259
Merged-chr5-124900021-4	chr5	124899924	124900124	+	876.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37319.0	NM_001081750	269704.0	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	4.38336231335729	4.22982062216633	4.11977909404974	3.93613257623847	4.11831154012537	4.55316526595931	4.0017015089793	4.29914888647007	0.220710304161882	0.603306253671608	0.828026186791373
Merged-chr2-152293289-1	chr2	152293189	152293389	+	574.5	f0_balb.idr	promoter-TSS (NM_024196)	promoter-TSS (NM_024196)	-583.0	NM_024196	67231.0	Mm.288733	NM_024196	ENSMUSG00000027465	Tbc1d20	1110028I04Rik|2810442O16Rik|AI414693|bs	TBC1 domain family, member 20	protein-coding	3.23021247943615	3.21742687901765	3.28708548472351	3.28546631117473	3.2288260070667	2.93532908335766	3.27433834935331	3.39100044890832	-0.137843403768618	0.804257786869507	0.924654181188879
Merged-chr8-122932624-4	chr8	122932505	122932705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	84231.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	6.14304506428126	6.10833007956052	5.56697199226597	5.68268328247524	5.78628352091005	5.74384710618265	5.32681466920098	5.38224399418061	-0.513522304444284	0.0873214098732542	0.322361424893333
Merged-chr7-6154282-4	chr7	6154171	6154371	+	989.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	1700.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	5.54520869311229	4.88111186604202	5.59806841099697	5.68291956627395	5.55689703437606	5.28816637208486	5.61917476025067	5.6680531822497	0.12369767588241	0.698715846021229	0.878505428649175
Merged-chr13-90360111-2	chr13	90360020	90360220	+	695.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	270453.0	NM_025335	66074.0	Mm.241387	NM_025335	ENSMUSG00000012422	Tmem167	0610041E09Rik|5730424F14Rik|AU041184|AW537806|Gm10085|Tmem167a	transmembrane protein 167	protein-coding	2.62916192971337	2.41958088969585	2.4698864848519	2.40860393960945	3.20672341735457	3.07849649518099	2.95101738970073	3.27498371044268	3.28371804017294	3.13703560157163e-06	9.82795145617373e-05
Merged-chr5-121215553-3	chr5	121215443	121215643	+	884.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4676.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	3.5110850425833	3.7696982022567	3.25882953524073	2.81718756870937	3.87732760474126	3.98836174396192	3.49737311630393	3.56595431499891	1.11297066721775	0.0684777353958119	0.279448212493138
Merged-chr3-95819457-4	chr3	95819362	95819562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081293)	promoter-TSS (NM_001081293)	-509.0	NM_001081293	75137.0	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	7.16277491474316	7.21816912503885	6.77131153597739	6.80548742064088	7.18624252677319	7.51816544073009	7.26574401136516	6.9909084812541	0.344609988857074	0.113927215586555	0.373318991031321
Merged-chr4-127151315-4	chr4	127151201	127151401	+	981.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17903.0	NM_198618	242667.0	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	DLG associated protein 3	protein-coding	6.0305985168039	5.33455976710656	4.93178405736037	5.65508039780914	5.81161444305369	5.54730821592944	5.46112170950356	5.51282605698538	0.0732867614864573	0.828619290422879	0.934199261424475
Merged-chr9-44316651-4	chr9	44316568	44316768	+	907.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359259, intron 4 of 13)	intron (NM_001359259, intron 4 of 13)	3614.0	NM_001359259	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	4.64762976771766	4.63943941491932	4.15230661997018	4.38109252365675	4.06007153720108	3.99699516367349	4.48232348533856	4.33719445915254	-0.567752101169376	0.174435535288222	0.468905433221813
Merged-chr5-64237806-4	chr5	64237631	64237831	+	995.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	Lx9|LINE|L1	7374.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.20713780715563	3.49612544775769	3.94399829285001	4.01568253764542	4.03071227552277	3.96351871917152	4.02031392659037	3.7863110548335	0.040826465670791	0.931007352657258	0.97520485035137
Merged-chr3-135826255-5	chr3	135826169	135826369	+	974.679993	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001135150, exon 2 of 9)	5' UTR (NM_001135150, exon 2 of 9)	479.0	NM_001135150	67547.0	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	4.49389397342524	4.3837352480553	4.730196509239	4.90991000847261	4.53186869126645	4.62562244945981	4.70761029463148	4.4026603756916	-0.201736938682918	0.591974982182264	0.821896878240415
Merged-chr7-98360242-4	chr7	98360128	98360328	+	977.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168540, intron 1 of 2)	intron (NM_001168540, intron 1 of 2)	1060.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	5.44930497719678	5.24017429842566	5.23222249585447	4.85275648255893	5.1892193312658	4.95069637251867	4.86979939757413	5.10359978158002	-0.289913227216827	0.383985010695259	0.685644380524807
Merged-chr7-25250021-4	chr7	25249906	25250106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010155, intron 1 of 3)	CpG	752.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	6.30204066884869	6.27024031146512	6.10463197215682	6.06684013460397	6.44210645798985	6.32333338509873	6.42538856147927	6.29864706832521	0.297149517745232	0.180337291095427	0.476678550593452
Merged-chr4-124850661-4	chr4	124850550	124850750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142727)	promoter-TSS (NM_001142727)	80.0	NM_001142727	68920.0	Mm.272397	NM_001142727	ENSMUSG00000078570	1110065P20Rik	C530005M16Rik	RIKEN cDNA 1110065P20 gene	protein-coding	7.04059056867662	7.34794159198239	7.16255902748353	7.04392212195509	7.26355219988284	7.52103550829401	7.27770771861994	7.20273952494481	0.226716113366605	0.236694864897796	0.546701618864918
Merged-chr10-79854437-4	chr10	79854352	79854552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008956)	promoter-TSS (NM_008956)	20.0	NM_001283013	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	8.86383975502055	8.91621387218931	8.86907428105269	8.6766874894418	8.9348045251617	9.14644238733589	8.85591569094372	8.72957997137556	0.117408260524279	0.461891026348737	0.743501704400988
Merged-chr6-113622324-4	chr6	113622231	113622431	+	937.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1690.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	4.82156288858114	4.98459628106994	4.33570999670086	4.88470728974222	4.68545005341224	4.75746679741355	4.97019276041048	5.19838985011999	0.255647085635344	0.488217201992817	0.76118893988362
Merged-chr5-92279924-4	chr5	92279832	92280032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1751.0	NM_025972	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	6.00447576379105	6.01861835778684	5.67175550689931	5.983532366601	6.15823026300252	5.67635544391949	5.88867477567092	5.82155875155444	-0.0322754660091839	0.901720998718864	0.963514762035143
Merged-chr16-57559186-3	chr16	57559093	57559293	+	967.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	9951.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	3.67768899109039	3.59188420536146	4.42491929375715	4.26989780973225	3.44749497262983	3.55006094677628	3.60671785478465	3.61867607773041	-1.46584538322997	0.0061002173961833	0.0549490475883234
Merged-chr12-112670855-4	chr12	112670752	112670952	+	742.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331107, intron 2 of 13)	intron (NM_001331107, intron 2 of 13)	3424.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	4.14249445376245	4.29236018571741	3.89509255809827	4.2569973655161	3.89866969391304	3.84025935208915	4.33010434122018	4.09470673817564	-0.287041919965387	0.512146840690989	0.775701492755237
Merged-chr2-164656027-4	chr2	164655936	164656136	+	888.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039501)	promoter-TSS (NM_001039501)	-10.0	NM_001039501	629756.0	Mm.189007	NM_001039501	ENSMUSG00000070529	Wfdc10	Gm120	WAP four-disulfide core domain 10	protein-coding	4.50126680812421	4.48873101416322	4.4595034730035	4.22832273139917	4.70687386624499	4.89620363144545	4.43951959921537	4.5800583221497	0.580361290519153	0.114216792649391	0.373837784954674
Merged-chr19-42094705-3	chr19	42094579	42094779	+	938.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145501, intron 1 of 8)	intron (NM_145501, intron 1 of 8)	4244.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	3.30432507225408	3.4072232349354	3.46111067201112	3.5431438329453	3.04473675058467	3.10161307281108	2.98461110494602	3.18718442245782	-1.41014686329692	0.0132655183149479	0.0963594579181222
Merged-chr1-75458356-4	chr1	75458249	75458449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183022, intron 1 of 9)	intron (NM_183022, intron 1 of 9)	7839.0	NM_183022	241118.0	Mm.110790	NM_183022	ENSMUSG00000033007	Asic4	Accn4|BNAC4	acid-sensing (proton-gated) ion channel family member 4	protein-coding	5.15639359985201	5.49019138334645	5.52272300876139	5.66134905839467	5.14843689173685	5.36942696634139	5.38515273652702	5.69140085386603	-0.137714995266692	0.650859353915131	0.853538661906978
Merged-chr11-74988287-4	chr11	74988178	74988378	+	973.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 9 of 18)	intron (NM_001002764, intron 9 of 18)	62406.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	4.81491138514468	5.01069285552171	5.48705204756925	5.13151643692935	4.98381271237853	4.63435175377397	5.30968744121624	4.92768319205711	-0.27635153607791	0.434583771050478	0.7238182012175
Merged-chr1-80630488-4	chr1	80630382	80630582	+	917.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 3 of 55)	intron (NM_175291, intron 3 of 55)	34870.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	4.76939442162198	4.98215249340468	4.77017564874231	4.85928412873926	4.71743046205905	4.74681740961547	4.41672722412525	4.61085938765567	-0.462182484962101	0.178630252368635	0.474447656007578
Merged-chr17-42436169-4	chr17	42436069	42436269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355270, intron 2 of 2)	intron (NM_001355270, intron 2 of 2)	119569.0	NM_001355270	627626.0	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	5.52146864195102	5.68138288920262	5.71305985367681	6.25037460871178	5.67048410307411	5.44503186648139	6.12427046427553	5.57593186319488	-0.182283218397738	0.56468695961253	0.806894848699342
Merged-chr1-36303574-4	chr1	36303492	36303692	+	987.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4141.0	NM_001172206	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	5.23165186677976	5.21244223655542	4.93972814439929	4.98689942668018	5.02459625777942	5.18456414138855	4.84162575715922	5.00750053887426	-0.142697674348707	0.650088290934541	0.853039400580308
Merged-chr10-84388861-3	chr10	84388773	84388973	+	980.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 4 of 6)	intron (NM_001004363, intron 4 of 6)	51598.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	4.37272560261088	4.29243820909411	4.90281187091118	4.41885962408547	4.11870483116103	4.00218798723826	3.97664479159622	3.9342476840746	-1.24615065207473	0.00395756655627149	0.0397201959826352
Merged-chr1-84985714-1	chr1	84985614	84985814	+	703.0	f1_balb.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	-50631.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	2.69777606193071	2.86383856369079	2.69818266725219	2.13939473137342	2.20437635187552	2.31174842564783	2.62700351494873	2.28683147313872	-1.44990779449449	0.0867160134831277	0.321209032577518
Merged-chr8-4531898-4	chr8	4531801	4532001	+	739.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38496.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	3.89723835138704	4.08482405628904	4.42587054176682	4.65966553284954	4.39939638014516	4.29026617802834	4.28262772569731	4.16204149410081	-0.072659647513628	0.869231427886269	0.950903229636096
Merged-chr13-23887534-4	chr13	23887433	23887633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_121611, intron 10 of 12)	intron (NR_121611, intron 10 of 12)	17260.0	NM_001170638	20504.0	Mm.2656	NM_009198	ENSMUSG00000021335	Slc17a1	NAPI-1|Napi1|Npt1	solute carrier family 17 (sodium phosphate), member 1	protein-coding	5.75692165044207	5.19873648930579	5.36148203617161	5.14990451305298	5.75208595427086	5.70967041235171	5.58545286232168	5.60996088043843	0.513886990946435	0.0778114507354805	0.301658982136941
Merged-chr11-34034107-4	chr11	34033994	34034194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	MTE2a|LTR|ERVL-MaLR	-12834.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	7.34260795244597	7.19608829954102	7.5986639466688	7.0351282480575	6.93932882002567	6.71761560949729	7.20607246234245	6.9404200725235	-0.459795054135009	0.0361596860966218	0.189056140492981
Merged-chr5-122708154-2	chr5	122708057	122708257	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_001310718, intron 1 of 10)	intron (NM_001310718, intron 1 of 10)	613.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	6.5126112946263	6.79501541812771	6.48094456843354	6.40899796336824	6.60490265614104	6.27351491813096	6.08613948315556	6.35426804133581	-0.292997537335186	0.220361454866304	0.52822482642718
Merged-chr1-180888867-4	chr1	180888783	180888983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4225.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	7.14927931528519	7.41443760909837	7.07937157642777	6.85490248086448	7.37747585080218	7.42688369729215	7.15973003346932	7.04976198663895	0.180543892862781	0.396369819888447	0.69519327480908
Merged-chr13-100683035-4	chr13	100682941	100683141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183115, intron 5 of 11)	intron (NM_183115, intron 5 of 11)	13560.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	5.76353353521179	5.7140982370378	6.1009669363248	5.91861412362634	5.78524301591196	5.65902309666266	6.25138006517696	6.31267838967277	0.232255742180002	0.404941934118722	0.701981537472882
Merged-chr9-72458471-4	chr9	72458369	72458569	+	743.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009359, exon 12 of 12)	3' UTR (NM_009359, exon 12 of 12)	19940.0	NM_008613	17427.0	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	3.5822957626163	3.69103001423023	3.46023803056107	3.39568284622963	3.94368248337818	3.5778655846208	4.19617426412671	3.89165194983998	1.17316718414064	0.0146094894861982	0.102836411561917
Merged-chr2-168120924-2	chr2	168120824	168121024	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33589.0	NR_040327	77017.0	Mm.407822	NR_040327	ENSMUSG00000087648	E130018N17Rik	-	RIKEN cDNA E130018N17 gene	ncRNA	2.95025814613847	3.01729194989396	3.01396046940828	2.67289876647859	3.25351383698186	3.1246516782404	3.17415465332341	3.01244593774309	0.994404292302029	0.0940397153419701	0.335476295148992
Merged-chr1-37634847-2	chr1	37634747	37634947	+	780.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_028096, intron 3 of 9)	B2_Mm2|SINE|B2	84964.0	NM_028096	72097.0	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	3.12480655650377	3.35073842946947	3.18590101152372	2.76845109087244	3.1231786023642	3.29944605277437	3.17377371127017	3.35067407360145	0.462197493160666	0.435747296686742	0.724813945806151
Merged-chr17-83709742-4	chr17	83709671	83709871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 2 of 16)	intron (NM_054082, intron 2 of 16)	3608.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	7.20318844984763	7.10165341893568	6.76405324433745	6.38678279965372	6.98034259585176	7.09694281858236	6.92382806018363	7.43970007715603	0.322250131298891	0.203426034124143	0.506211078273052
Merged-chr10-127536636-7	chr10	127536490	127536690	+	785.019043	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2031.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	3.33801908769332	3.44026439123441	3.49519915058345	3.14905424213716	3.39173076717836	3.27104149072027	3.08509000809144	3.2206019244572	-0.372518656773225	0.500416354248047	0.768850577358824
Merged-chr11-47221685-4	chr11	47221592	47221792	+	926.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 2 of 7)	MTE2b|LTR|ERVL-MaLR	157610.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	4.67642384239368	4.80450197746958	4.67718150852547	4.79256887484508	4.57104336528029	4.50969078549796	4.57793755144246	4.46940157707565	-0.457721608997107	0.184914560459374	0.48258537431025
Merged-chr1-131703666-3	chr1	131703561	131703761	+	785.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311096, intron 4 of 4)	intron (NM_001311096, intron 4 of 4)	14966.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	3.28751489516985	3.03610321931904	3.04863852653523	2.54320932555223	4.25279815452095	4.50660850083667	3.91445464607979	4.26108328685145	5.07001451663802	8.96227080968583e-14	1.18353520215701e-11
Merged-chr3-57735958-4	chr3	57735846	57736046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304456)	promoter-TSS (NM_001304456)	-111.0	NM_011883	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	8.18246595312967	8.53967361176372	8.59600863731354	8.34686202825405	8.41993604223895	8.6804986958353	8.45843508727496	8.26893125056867	0.0486232923818436	0.780718625723003	0.914614705385241
Merged-chr12-70937830-4	chr12	70937697	70937897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019785)	promoter-TSS (NM_019785)	-60.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	6.99412754531796	6.97490599031935	6.87760190036091	6.84327834401726	7.2177946599338	7.02681853053919	6.98466046792367	6.92640233207098	0.183626126318178	0.341190276438729	0.650275314861081
Merged-chr2-174564062-4	chr2	174563963	174564163	+	897.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79471.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	4.40716800677494	4.22550054228214	4.4504425574024	4.57024876266776	4.62565743563509	4.24423773019739	4.29940262094804	4.77690588581614	0.190479350165263	0.627381730414444	0.841151302397407
Merged-chr2-152335487-4	chr2	152335387	152335587	+	976.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A2|LTR|ERVK	-2848.0	NM_019705	24105.0	Mm.182145	NM_019705	ENSMUSG00000027466	Rbck1	AL033326|HOIL-1|HOIL-1L|UIP28|Ubce7ip3	RanBP-type and C3HC4-type zinc finger containing 1	protein-coding	4.68417740428317	4.0255432512446	4.54007233889526	4.36423892270927	4.50662611509669	4.09576835027786	4.72800836596925	4.23568513068702	-0.00178614729833585	0.996657167181963	0.998649443287934
Merged-chr11-5955743-4	chr11	5955663	5955863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019661)	promoter-TSS (NM_019661)	5.0	NM_019661	56418.0	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	7.3602526834544	7.03113987988541	7.18273605723725	7.23284723810171	7.26583961452322	7.12485281217769	7.4893667290866	7.09600387371909	0.0667936288152752	0.732058432404146	0.893899457217023
Merged-chr6-38710625-4	chr6	38710508	38710708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 12 of 14)	intron (NM_010433, intron 12 of 14)	47539.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	7.31231042405092	7.31257050893663	7.18381064066686	7.32537103602021	7.42210463182913	7.0390676519815	7.33708213932489	7.21248780785525	-0.0252943307408672	0.892063013525241	0.9596010491436
Merged-chr17-43518918-4	chr17	43518855	43519055	+	931.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-16182.0	NM_008585	17287.0	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding	3.87569307166985	4.07733478639053	4.22803730380662	3.90767469957458	3.8683799584101	3.77444952916435	3.64274838838162	3.87400598064884	-0.643708593255483	0.154787928089276	0.440177211123282
Merged-chr11-111445963-2	chr11	111445863	111446063	+	780.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	379799.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	2.97826886534086	3.03084215676175	2.7803254573989	2.75987209539178	3.10883611310698	3.02429400231064	3.13767818294363	3.03700604222024	0.82078477225456	0.160653028041064	0.448876227004313
Merged-chr3-88746026-4	chr3	88745912	88746112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018804, exon 4 of 4)	3' UTR (NM_018804, exon 4 of 4)	26587.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	5.60751889006942	5.56709872287218	5.31964604603365	5.52957665806149	5.79019552716501	5.70299750324585	5.32528333262677	5.65512310605049	0.210014308308463	0.448021556716076	0.73332468018769
Merged-chr1-152430041-4	chr1	152429933	152430133	+	936.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177756, intron 1 of 11)	L1M3|LINE|L1	30166.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	4.14484876870274	4.52419184855344	4.09380816081043	4.27701386410034	4.5249969279178	4.5899276232776	3.78800385513029	4.67420441278815	0.386798784543308	0.391271253854557	0.691040061984853
Merged-chr1-156066298-3	chr1	156066194	156066394	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001358627, exon 6 of 6)	3' UTR (NM_001358627, exon 6 of 6)	25433.0	NM_022329	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	3.58000857482493	3.76820022079588	3.50078595756433	3.11105330491773	5.17588526671221	5.02693358789445	5.02782314666091	5.07828185738924	4.2155512868677	1.09241028236433e-21	4.5471737712521e-19
Merged-chr16-90197533-4	chr16	90197419	90197619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23223.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	6.64186093645211	6.83331728075862	6.45500301672458	6.60129171427088	6.88766451080233	7.03739759282913	7.18244958937389	6.68503896294251	0.44911243593081	0.037725148099505	0.194160398884647
Merged-chr3-55153156-3	chr3	55153061	55153261	+	761.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177203, intron 4 of 7)	intron (NM_177203, intron 4 of 7)	10920.0	NR_110781	320604.0	Mm.213909	NM_177203	ENSMUSG00000048655	Ccdc169	A730037C10Rik	coiled-coil domain containing 169	protein-coding	3.80534332976823	3.89097282836776	3.85317042146373	3.91502805713304	3.62397716601825	3.52781333314829	3.58335551306806	3.65006616262617	-0.844194992223708	0.0694478468388115	0.281858153161122
Merged-chr6-51384179-4	chr6	51384136	51384336	+	754.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110455, intron 1 of 2)	intron (NR_110455, intron 1 of 2)	4526.0	NR_110455	625167.0	Mm.389772	NR_110455	ENSMUSG00000107660	Gm6559	EG625167	predicted gene 6559	ncRNA	3.25361530875923	3.40351379544196	3.53926726363172	3.21307356437346	3.50641972746562	3.429731254183	3.47292776110146	3.58728646060306	0.522648775641233	0.302695987105878	0.615215855664921
Merged-chr4-84064821-3	chr4	84064721	84064921	+	852.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19942.0	NR_130998	78238.0	Mm.243903	NR_130998	ENSMUSG00000085217	6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA	4.35705863180606	4.02392535147181	3.80868119748323	4.16409169036205	3.11969333852885	3.3162048449956	3.18816960123168	3.27064123445228	-3.29780211294299	1.45579256026945e-07	6.03505292064176e-06
Merged-chr6-72391300-4	chr6	72391190	72391390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016794)	promoter-TSS (NM_016794)	-623.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	5.78685431548417	5.81716756915802	5.83548615977624	5.40684236740616	6.15824104852985	5.81004967713009	5.85135083661639	5.80776978750246	0.360464627276449	0.184669898024955	0.48228283513184
Merged-chr9-121419829-3	chr9	121419712	121419912	+	845.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357968, intron 1 of 14)	intron (NM_001357968, intron 1 of 14)	16366.0	NM_001357968	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	3.1689552850135	3.45073111299211	3.4033729533911	3.10063941883453	3.25396365871047	3.28112080110445	3.33558903742254	3.50402823471055	0.23095737596239	0.668363551629049	0.862948051435654
Merged-chr17-81665123-4	chr17	81665015	81665215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	73272.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	6.17686939270488	6.72346988909659	6.27634133230939	6.3898212412122	6.32661005086454	6.33412626266804	6.31733754862828	5.92607427732962	-0.258964371023129	0.295903159461067	0.607817470485954
Merged-chr2-59162361-3	chr2	59162260	59162460	+	875.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	1510.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	3.80891146949696	3.80975612573595	4.10361739706185	4.28899685144115	3.90345031039815	3.75210322000939	4.35629979600584	3.69267576339526	-0.200601260360252	0.681779298375271	0.8696372718143
Merged-chr11-48856116-1	chr11	48856016	48856216	+	584.0	f0_c57.idr	Intergenic	Intergenic	15304.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	3.85718862316534	3.91735574468675	3.80577272692748	3.55626708352888	4.02028176994676	4.0785175300346	3.93858095655151	3.85550205850443	0.567597513299514	0.201899094799788	0.504386342438373
Merged-chr17-13740966-4	chr17	13740856	13741056	+	888.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022311, intron 1 of 2)	intron (NM_022311, intron 1 of 2)	-19585.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	4.38401770504033	4.27509065951212	4.38470339902195	4.41889077129074	4.26605886829973	4.42538620650637	4.32282753243831	4.25020641136608	-0.133940391921681	0.721360901669804	0.888753092785481
Merged-chr17-34556414-4	chr17	34556307	34556507	+	882.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7888.0	NM_010929	18132.0	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	3.72536638491827	3.79506414267497	3.9456720832445	4.18187094649488	4.12192069673913	4.06810257072867	3.87833974443729	4.36859815308718	0.474038445578795	0.299653477702508	0.611914155398268
Merged-chr2-133554441-3	chr2	133554339	133554539	+	857.6166380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007553, exon 2 of 3)	exon (NM_007553, exon 2 of 3)	2280.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	3.99312773742244	3.83232613595947	4.08002638327159	3.91340449191682	3.70882690292832	3.68781424984782	3.78426091534556	3.94557328291916	-0.494553918703391	0.268817730748966	0.58040718972897
Merged-chr15-102471162-4	chr15	102471109	102471309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001174073, intron 1 of 12)	CpG	577.0	NM_001174073	18521.0	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	5.56476999579711	5.89544098435992	5.92692931570429	5.8514327246843	5.9937924004692	6.14553312124947	5.91883166710786	6.09048252362764	0.341632991303305	0.165286948922261	0.455900168074775
Merged-chr18-35156914-4	chr18	35156817	35157017	+	883.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009818, intron 3 of 17)	MTE2b|LTR|ERVL-MaLR	38005.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	4.15533287249675	3.94766798267041	4.38735100803353	4.74169468364066	4.41875422889155	4.28330187181	3.97912147942723	4.84081739367689	0.145771855687461	0.758439698663332	0.905135209683573
Merged-chr14-21052517-4	chr14	21052375	21052575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134079)	promoter-TSS (NM_134079)	-33.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	8.13583791957488	8.24625300047801	7.83353980080825	8.01100877647175	8.08231070630568	8.11595684574406	8.19268053822478	7.86669203673151	0.005758140553613	0.973701590809693	0.990570637473211
Merged-chr1-85894917-2	chr1	85894817	85895017	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	407.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	4.94557440181643	5.09569058491835	5.15991226159845	5.01912148183553	5.3604122114179	5.51498749728764	5.25845536022527	5.39454507913151	0.604057977353348	0.0367058279852222	0.190734715298594
Merged-chr2-101797376-4	chr2	101797298	101797498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	CpG	309.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	5.75372140490973	5.50487485274561	5.68220325246423	5.33424869918103	5.97479581082831	5.95120080218458	5.3472464098102	5.3701438531433	0.23122219243186	0.452599959291024	0.736924187051972
Merged-chr17-86963237-4	chr17	86963190	86963390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145491, exon 1 of 5)	5' UTR (NM_145491, exon 1 of 5)	179.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	7.31100283345	7.06674825691586	6.88898662394373	6.96490627393288	7.27114611838857	7.19858074125182	7.3245276391483	6.89800624852546	0.169587340413926	0.408391169670378	0.704329923147872
Merged-chr15-50708412-4	chr15	50708315	50708515	+	909.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	180634.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	5.02399657648008	4.76511185430747	4.80098693290713	5.00701464859287	4.30577069206082	4.52274015180887	4.50800066422126	4.34000373985324	-1.08556758004688	0.00235991400875463	0.0265575208267424
Merged-chr3-126923792-4	chr3	126923717	126923917	+	943.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001327939, exon 46 of 46)	3' UTR (NM_001327939, exon 46 of 46)	19569.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.78919850870892	3.74670625243574	4.0392630375898	3.830926305261	4.21930935881422	3.73190930752228	4.22745745399445	3.89312608600181	0.520152843762203	0.248033957441734	0.559137354284593
Merged-chr7-80831681-4	chr7	80831588	80831788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-28357.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	5.87096020330056	5.71395683616403	5.70680219895021	5.92205208564122	5.9816841759884	5.43931215142658	5.57357983878981	5.65135147928666	-0.19595807606131	0.475604254868189	0.752388549309966
Merged-chr5-73292751-4	chr5	73292657	73292857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159889)	promoter-TSS (NM_001159889)	-37.0	NM_001159887	68095.0	Mm.247039	NM_023429	ENSMUSG00000029152	Ociad1	6030432N09Rik|AI481327|AW557942|Asrij|B230209J16Rik|BB021357|Emi2|Imi2|OCIA|TPA018	OCIA domain containing 1	protein-coding	8.40313053845413	8.36720473754559	8.24313280770709	8.12586916974466	8.45266004005962	8.54518532471969	8.51717330214229	8.55570208631999	0.295433444585223	0.0554393000757566	0.246284066702662
Merged-chr6-91576106-3	chr6	91575997	91576197	+	840.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60062.0	NM_026309	67678.0	Mm.246693	NM_026309	ENSMUSG00000034192	Lsm3	1010001J12Rik|2610005D18Rik|6030401D18Rik|SMX4|USS2	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	3.69120532149566	3.50317924786397	3.42014484546397	3.41009166153616	3.70388179077423	3.65181014322295	3.57545495826189	3.58785362078407	0.420714014847196	0.38118658686662	0.68350665222136
Merged-chr4-99111917-4	chr4	99111825	99112025	+	895.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026082, intron 1 of 47)	MLT1K|LTR|ERVL-MaLR	8990.0	NM_001290636	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	4.26944923623462	4.14469623861687	4.37326389668537	3.99176752674394	4.8009168418824	4.97118728583269	5.21924698703884	5.36296922184261	1.97421065471621	7.45079165943702e-08	3.27755623534422e-06
Merged-chr6-145303091-4	chr6	145302988	145303188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52536.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	7.3026069054271	7.35590965676897	7.6495417530451	7.62491476465651	7.67236806426243	7.27156458936412	7.56224906535512	7.30948862402648	-0.0331054089843723	0.866918503143634	0.950176959983689
Merged-chr12-100131906-2	chr12	100131806	100132006	+	815.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290303, intron 10 of 13)	intron (NM_001290303, intron 10 of 13)	19575.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	3.10016824829988	3.05992052536575	3.43716924879418	3.21731708134694	3.19046865354311	3.4484287349867	3.15185819152096	3.16150321803384	0.113819318966962	0.837756089190827	0.938459467190736
Merged-chr7-105954037-1	chr7	105953937	105954137	+	585.5	f0_c57.idr	promoter-TSS (NM_029000)	promoter-TSS (NM_029000)	-67.0	NM_029000	74558.0	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	2.5574914985121	2.49686986266157	2.55771437242064	2.16039721706065	3.45497433838837	3.31885591070869	3.72537682926676	3.24963402542707	7.37162882974436	2.48110042517754e-13	2.98819369143337e-11
Merged-chr1-183320947-4	chr1	183320835	183321035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181732, intron 8 of 9)	intron (NM_181732, intron 8 of 9)	-23642.0	NR_151660	71678.0	Mm.392270	NM_027861	ENSMUSG00000046836	Brox	0610010K06Rik	BRO1 domain and CAAX motif containing	protein-coding	5.90110008163189	5.99724354506537	5.85711217706364	5.7619268505418	5.64177866719126	6.05384012743687	5.60355878073662	5.627918978176	-0.224810603776334	0.392328942483725	0.691871177834811
Merged-chr11-75178879-4	chr11	75178780	75178980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027136)	promoter-TSS (NM_027136)	-72.0	NM_027136	246257.0	Mm.41496	NM_027136	ENSMUSG00000038268	Ovca2	9030414M07Rik	candidate tumor suppressor in ovarian cancer 2	protein-coding	6.41663173682959	6.48865955994415	6.14255595480635	5.9299601083816	6.11820730280823	6.29805422465409	6.1901756862299	6.09649499255853	-0.114509412556936	0.648426529202232	0.852208932136954
Merged-chr4-142017881-4	chr4	142017788	142017988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131014)	promoter-TSS (NR_131014)	-10.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	7.55080897033446	7.56435292373058	7.7647327157619	8.10457227235895	7.6545737986611	7.36772970292897	7.967390561131	7.9342593998088	-0.0298940501991119	0.891420092687699	0.959385213525176
Merged-chr1-184502731-1	chr1	184502631	184502831	+	644.0	f0_balb.idr	Intergenic	Intergenic	54960.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	3.46720924976919	3.60384850445842	3.35269421634534	3.43573353968564	3.73195015235884	3.33785629228738	3.34093681481114	3.51955963556822	0.118846670202313	0.817752981025115	0.929985132154
Merged-chr18-20810397-2	chr18	20810297	20810497	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-63993.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	3.71478393757001	3.91336082346928	4.12402592590993	3.78830465758096	4.2756758957019	4.05811316852579	3.96843932561381	4.12142997466429	0.620609810935624	0.149491875070535	0.431761771263985
Merged-chr8-120678609-4	chr8	120678512	120678712	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10292.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	4.11278548471247	3.65202518127328	3.51307487923872	3.62516840112404	3.9433328525579	3.69322470349999	4.09392476617316	3.68908697308235	0.373594924161248	0.445195954210892	0.731298032078032
Merged-chr4-62357914-4	chr4	62357820	62358020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 1 of 27)	intron (NM_001355385, intron 1 of 27)	2676.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	6.18220497584041	6.39851529776391	6.51907858912295	6.5651026418229	6.57595135341197	6.44342789981674	6.6244604529434	6.72481758176781	0.234512259889304	0.285683110953712	0.597403017136955
Merged-chr10-71262628-4	chr10	71262527	71262727	+	901.9874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145420, intron 1 of 6)	intron (NM_145420, intron 1 of 6)	22635.0	NM_145420	216080.0	Mm.270530	NM_145420	ENSMUSG00000019927	Ube2d1	UBCH5	ubiquitin-conjugating enzyme E2D 1	protein-coding	4.69047161130289	4.3805688401428	4.30611745303511	4.77662682784164	4.62803270511867	4.82482560609074	4.74011049795176	4.39941351179517	0.188884622248014	0.618498667755667	0.83600677311395
Merged-chr6-142711200-7	chr6	142711146	142711346	+	793.676208	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCCCCT)n|Simple_repeat|Simple_repeat	-8972.0	NM_001310143	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	3.94934609303613	3.9950793118891	4.2127685268287	3.86040948575809	3.8901499850653	3.79919032745076	3.83318551953114	3.99529397389911	-0.330607038109616	0.451203474240038	0.735800313712694
Merged-chr5-31295766-4	chr5	31295671	31295871	+	871.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_022424, exon 1 of 7)	5' UTR (NM_022424, exon 1 of 7)	161.0	NM_001356945	64339.0	Mm.292544	NM_022424	ENSMUSG00000038552	Fndc4	2810430J06Rik|6330410H20Rik|AB030187|AI838506|AW487863|FRCP1|Fnmp1	fibronectin type III domain containing 4	protein-coding	3.8671817555533	4.25661901097152	4.45404144248052	4.10522054893697	4.46840743968454	3.86941772602872	4.01185609406879	4.07571528152686	-0.113965967061694	0.802200989125191	0.923754158062033
Merged-chr7-24971453-4	chr7	24971364	24971564	+	916.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010261, intron 3 of 4)	intron (NM_010261, intron 3 of 4)	1264.0	NM_010261	14470.0	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	4.13925656675044	4.3776021082415	4.1398605159269	4.13318182297711	4.25209464190167	4.31266103356282	4.16907870745693	4.35778724579626	0.184339473963652	0.636918310224425	0.846506358316041
Merged-chr9-23601709-3	chr9	23601602	23601802	+	721.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	378626.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	3.44830979584298	3.22586134215803	3.49538178481986	3.41170663710726	3.23684058367761	3.02327688879798	3.10934878454754	2.98787374755012	-1.17108593605264	0.0427230974396227	0.210104820772217
Merged-chr11-83125119-4	chr11	83125027	83125227	+	881.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8307.0	NM_011407	20555.0	Mm.10948	NM_011407	ENSMUSG00000078763	Slfn1	AV316259	schlafen 1	protein-coding	4.71521530788172	4.67201651845252	4.78112202612705	4.39979497978005	4.05759345626412	4.31163737037964	4.16565200167134	4.01990099358679	-1.20773426014382	0.00270991295356782	0.0295072501333951
Merged-chr6-57790734-4	chr6	57790627	57790827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	34398.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	5.90069746907451	5.62333280224261	6.13110427016802	6.0047521564303	5.85742273074167	5.74203828992874	6.225642302449	5.85097218965752	0.00402437553049986	0.987955599998893	0.995370064932717
Merged-chr7-116494832-4	chr7	116494761	116494961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9508.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	6.65010229548795	6.00477459856036	6.48995087543681	6.45040938844061	5.97157864081908	6.24236641171001	5.89599105509339	6.14571677014902	-0.534974484100151	0.0344530726088106	0.183558028085519
Merged-chr6-72390533-4	chr6	72390441	72390641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_016794, exon 1 of 3)	5' UTR (NM_016794, exon 1 of 3)	126.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	5.82775116774872	5.40714530869263	5.15917474070126	5.50122290538587	5.48804501787791	5.15166522705577	5.32847869998019	5.59788142036761	-0.153588981831275	0.615162772595968	0.834301983320473
Merged-chr16-37814439-3	chr16	37814342	37814542	+	826.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008047, intron 2 of 10)	intron (NM_008047, intron 2 of 10)	37387.0	NM_008047	14314.0	Mm.182434	NM_008047	ENSMUSG00000022816	Fstl1	AI316791|AW107808|Fstl|TSC-36	follistatin-like 1	protein-coding	4.08336796864091	4.49460229907961	3.78761768973899	4.10610340616176	3.61772788312282	3.66403980849738	3.92741162454363	3.78552895568698	-1.10992849975579	0.0203002367584639	0.129278925671531
Merged-chr6-124729510-4	chr6	124729417	124729617	+	994.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 3 of 15)	B1F2|SINE|Alu	3637.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	5.238712991181	5.05097933216573	5.05175239183875	4.7334140150879	5.36913082487377	5.08511227302817	4.95844390683643	5.04831853409897	0.233620527107538	0.478818300412345	0.754690163973656
Merged-chr11-11730291-4	chr11	11730193	11730393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301865, intron 3 of 6)	intron (NM_001301865, intron 3 of 6)	40116.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	7.88767774447839	7.72927430750819	8.14153943783529	7.96879683449132	7.50845164401757	7.76805850419389	7.84373642506069	7.70665943773186	-0.302940576625451	0.0939171236510695	0.335277877261288
Merged-chr1-120535059-2	chr1	120534959	120535159	+	718.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30035.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	3.14877185110146	2.69850873173575	2.96912582342344	3.01244608292762	3.15892487956391	3.14203032929419	3.24263136649134	3.03044983866901	0.717761646034387	0.228215377855403	0.537049703453888
Merged-chr17-57331152-4	chr17	57331026	57331226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-27560.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	5.86555106484173	5.88640206369802	6.14214122017357	6.01382096584565	6.05860895383633	5.66297190880022	6.14794559463416	5.78932370916117	-0.0702726661347871	0.783849192056984	0.915840917490605
Merged-chr2-131095040-3	chr2	131094937	131095137	+	901.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8272.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	3.80866053948008	3.61214014009671	3.17714946814173	3.59327052255506	3.67521471758576	3.6753472381746	3.6497797832802	3.61095295537248	0.266549224714588	0.600529668577078	0.826836656557895
Merged-chr6-88826256-4	chr6	88826141	88826341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011844, exon 8 of 8)	3' UTR (NM_011844, exon 8 of 8)	15694.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	6.5721127882097	6.86450673404689	6.67088793819654	6.85677770404714	7.1157037741827	6.87875801178369	7.05668774065183	6.6183032450919	0.256441414427867	0.235888677997314	0.545896142740888
Merged-chr8-85432440-2	chr8	85432340	85432540	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025722, intron 1 of 3)	CpG	401.0	NR_033144	66714.0	Mm.272748	NM_025722	ENSMUSG00000036934	4921524J17Rik	-	RIKEN cDNA 4921524J17 gene	protein-coding	3.41491436159487	3.1392221670168	3.20786275783885	2.93646283268708	2.95088202277017	3.07022526920839	3.07881896145186	3.20608238400188	-0.398283959608063	0.498194359207066	0.767539498804104
Merged-chr11-47276871-4	chr11	47276783	47276983	+	919.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 2 of 7)	intron (NM_011891, intron 2 of 7)	102419.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	4.57614744273358	4.80920850889235	5.03903505125494	5.33322768239888	4.70231939848193	4.56454262679215	5.48819450462434	4.78658139563592	-0.0830197707820729	0.839845990514693	0.939131078101489
Merged-chr5-115341256-4	chr5	115341160	115341360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026933)	promoter-TSS (NM_026933)	13.0	NM_026933	69076.0	Mm.27951	NM_026933	ENSMUSG00000029535	Triap1	1810015M01Rik|AU020874|AU043831|P53csv|Wf-1	TP53 regulated inhibitor of apoptosis 1	protein-coding	5.87651378768767	5.98003331066188	5.28460588963294	5.54382639143302	5.78262013694652	6.00649095823428	5.72992398297413	6.19056202459125	0.389912584755215	0.179516780667624	0.475749514329241
Merged-chr11-28365561-3	chr11	28365482	28365682	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	218742.0	NM_001166661	216613.0	Mm.93759	NM_181577	ENSMUSG00000032878	Ccdc85a	-	coiled-coil domain containing 85A	protein-coding	6.77814759544901	6.65480737714687	6.86970546618096	7.06229964633736	4.89284724215641	4.80754178570682	4.57572377634804	4.70784364053636	-3.61473495628307	2.38533924709507e-29	2.78337806998328e-26
Merged-chr3-86959777-1	chr3	86959677	86959877	+	789.0	f0_balb.idr	Intergenic	Intergenic	-26809.0	NM_001289449	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	2.66821145168876	2.94560370971525	2.89704478314327	2.88251565832117	2.25939265621464	2.41555086511039	2.30792568925534	2.39059552753027	-3.7132328043245	0.000202613566148955	0.00367622508919614
Merged-chr10-12884789-4	chr10	12884688	12884888	+	886.470825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-23053.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	4.33206835566257	4.24325932815656	4.87710890417859	4.89600467979743	4.44637973997361	4.41316617847116	4.97205852681957	4.2809035743068	-0.160902544442538	0.707927166703647	0.882664444345553
Merged-chr15-39777339-7	chr15	39777196	39777396	+	952.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022722, intron 9 of 9)	intron (NM_022722, intron 9 of 9)	-19749.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	4.64426531644742	4.61361688257866	5.43813899290818	5.06782430249768	5.28464273927338	5.19173833529095	5.53164120833091	5.29900913327684	0.640071930949207	0.069094399378455	0.281000471566624
Merged-chr10-79928273-4	chr10	79928175	79928375	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001288625, intron 1 of 8)	intron (NM_001288625, intron 1 of 8)	934.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	5.47249576095344	5.00688098432674	4.77258396508301	4.8032928502384	5.40813928766694	5.69489777706385	5.160660165442	5.33429539978685	0.696695464016137	0.0384038705057926	0.196574444496652
Merged-chr5-114594867-4	chr5	114594750	114594950	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004180, intron 2 of 2)	intron (NM_001004180, intron 2 of 2)	26599.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	5.96707384123476	5.18246503367977	5.59688790168958	5.78302748726839	5.42640595471	5.24946783783075	5.43533472841804	5.17528458160326	-0.581093705186713	0.061570405662297	0.262599311201189
Merged-chr16-89774455-3	chr16	89774425	89774625	+	928.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43827.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	4.13259945889231	3.92267322052249	3.72548758203698	4.08325505160091	4.20568928314989	4.25809435108372	3.71193478955761	4.04026471121344	0.244661030993147	0.588803318186971	0.819895283778149
Merged-chr6-119471007-4	chr6	119470889	119471089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	MTE2a|LTR|ERVL-MaLR	-3778.0	NM_001271758	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	5.41574446766863	5.16770858010592	5.60773026230611	5.60027076802545	5.64788807078029	5.50132259692787	5.55399311184348	5.52548044131461	0.162719093421889	0.56223264296545	0.80548995216951
Merged-chr6-67074079-3	chr6	67073980	67074180	+	847.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040278, intron 4 of 6)	intron (NR_040278, intron 4 of 6)	-36673.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	4.34009348704376	4.1209324564762	4.49837380162819	4.42117281247019	4.15512391999259	4.18482438538575	4.09441810017585	4.33801957727732	-0.39493523318232	0.319743894990598	0.631588279324402
Merged-chr2-69109438-4	chr2	69109326	69109526	+	821.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172856, exon 10 of 10)	3' UTR (NM_172856, exon 10 of 10)	-26374.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	4.19145405126311	4.15907626018554	3.91115997035983	4.10098835877609	4.09177713519355	3.80202540545802	4.17308347135682	3.85564504209829	-0.265804560426313	0.537773489323038	0.791223080787503
Merged-chr5-140381326-4	chr5	140381222	140381422	+	953.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	7986.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	4.93468588647249	4.68357818458576	4.96887019451557	5.12420285268633	4.95932809155861	4.88936013434694	4.47666061132686	4.71145739400766	-0.340300665217161	0.333615719301909	0.644390472014073
Merged-chr6-113442588-4	chr6	113442500	113442700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205025)	promoter-TSS (NM_001205025)	31.0	NM_001243739	67767.0	Mm.2053	NM_026365	ENSMUSG00000051256	Jagn1	5830427H10Rik	jagunal homolog 1	protein-coding	5.7817850988407	5.92421935930814	5.39611207372952	5.89051514739329	5.52540047647258	5.72474441810766	5.72952940166326	5.93506057691036	-0.0760684245427982	0.783485010224831	0.915649203519514
Merged-chr12-100159737-4	chr12	100159640	100159840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183155)	promoter-TSS (NM_183155)	-87.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	8.16090448831853	8.02005218958151	7.96334168325493	8.12512277535519	7.94613237703622	7.90434363379944	8.19257915848087	7.56971510860299	-0.190615589523529	0.303510467740909	0.616135857836755
Merged-chr2-102883203-3	chr2	102883115	102883315	+	857.56665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	18450.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.74758830796085	4.54603788536589	3.7480916386962	3.58219545184288	4.16243886485191	4.27750859490648	4.08717156862186	3.55812956809093	0.206216859726173	0.704420791533067	0.88127019884038
Merged-chr1-184853466-4	chr1	184853348	184853548	+	981.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7601.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	5.57547190825924	5.50438306913054	4.87440274128815	4.99695253930755	5.5407482357221	5.17533308481563	5.54803949320392	5.35945053674375	0.278639773645156	0.397913787175478	0.696168855159895
Merged-chr6-124787178-3	chr6	124787069	124787269	+	979.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7442.0	NM_001302555	16977.0	Mm.3207	NM_013588	ENSMUSG00000030125	Lrrc23	4921537K05Rik|B7|Lrpb7	leucine rich repeat containing 23	protein-coding	4.20917481256833	4.01338379013174	4.01455459918308	3.26330108968459	3.31696162525643	3.55809062104204	3.60720886622067	3.56139463259749	-1.24116373536501	0.0275810407598375	0.15844272687142
Merged-chr7-84102769-4	chr7	84102656	84102856	+	656.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-16251.0	NM_030728	80982.0	Mm.160389	NM_030728	ENSMUSG00000052353	Cemip	12H19.01.T7|6330404C01Rik|9930013L23Rik|AY007814|Kiaa1199	cell migration inducing protein, hyaluronan binding	protein-coding	3.61011430748217	3.38171886663408	3.44932158142132	3.76850514079328	3.7442266954524	3.44171496634391	3.54491248153853	3.26372965805821	-0.167735274557364	0.752018195515965	0.902329068825205
Merged-chr8-14675680-4	chr8	14675571	14675771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-212865.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	7.8726333085582	7.65389566232589	8.17433704616816	8.07245145190018	7.61157714827637	7.53069839919303	7.8922544020883	7.48229843852643	-0.417981576623624	0.0331242544391445	0.178725841928734
Merged-chr11-121808428-4	chr11	121808328	121808528	+	951.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21790.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	4.20089954058067	4.56379918258216	4.30160560153122	4.30474287069938	4.70616782264883	4.65425042468484	4.61715960480598	4.67262682124543	0.706158912377789	0.0497421698346036	0.230900920550772
Merged-chr8-105393965-4	chr8	105393860	105394060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301173, intron 4 of 15)	intron (NM_001301173, intron 4 of 15)	18579.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	5.33362259545877	5.81150091568571	5.39551100524173	4.81708478520229	5.43195704589335	5.88288779766251	5.39764848668276	5.58452644662801	0.357756973563585	0.297741684031617	0.60998030561342
Merged-chr7-67342297-2	chr7	67342197	67342397	+	922.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 2 of 11)	intron (NM_001357324, intron 2 of 11)	30561.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	3.5631768086437	3.55538818528575	3.3366570204623	2.93112160442422	3.52884051450941	3.62861963304304	3.49609490179021	3.61256454973563	0.685110811028015	0.217992810296613	0.524940535745813
Merged-chr15-35515705-4	chr15	35515599	35515799	+	971.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 17 of 61)	intron (NM_177151, intron 17 of 61)	144153.0	NM_177151	666173.0	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	5.57389880419471	5.50639448149731	5.99727848994993	5.78561312602041	5.06914881484155	4.69744063794246	5.23656879834552	5.08769086954946	-1.23474764510505	8.55794767018871e-05	0.00178373691717822
Merged-chr13-94158992-5	chr13	94158935	94159135	+	850.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	101239.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	3.60155495249023	3.98947832840419	4.03139848015225	3.20609989229325	3.5766627792879	3.83183272650462	3.58771995947615	3.48204890649451	-0.367215256654924	0.50536646951302	0.771470037762552
Merged-chr7-12965822-4	chr7	12965715	12965915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362139)	promoter-TSS (NM_001362139)	-23.0	NM_001362140	243834.0	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	7.2905158873367	7.46324149877599	7.32373767518913	7.70628795861448	7.42673388029287	7.25773278545646	7.61823417866336	7.60932622127439	0.0217295185959977	0.912333963819324	0.967207481621882
Merged-chr11-49720016-4	chr11	49719928	49720128	+	896.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-7306.0	NM_212484	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	4.45187605641347	4.18874775335735	4.28466761751256	4.63521070721922	4.48118645040825	4.36571724978272	4.2206302912837	3.92341137728462	-0.336500839641943	0.424214883773754	0.716051867773294
Merged-chr17-35353168-3	chr17	35353060	35353260	+	831.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	10827.0	NM_010392	15013.0	Mm.427969	NM_010392	ENSMUSG00000091705	H2-Q2	BE136769|Gm11132|H-2Q2|gs14-2	histocompatibility 2, Q region locus 2	protein-coding	4.87612380757875	5.12453304305618	4.93690707085925	5.16779228821385	3.70956567676954	3.70617161628421	3.71173814263263	3.65046943444759	-3.73144547487773	5.45854549908935e-13	6.13797488277537e-11
Merged-chr4-134838431-3	chr4	134838323	134838523	+	601.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355499, intron 1 of 11)	intron (NM_001355499, intron 1 of 11)	14922.0	NM_001355501	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	3.3392857397333	3.2217831119173	3.39350664905624	3.44751982630703	3.36464875391752	3.20780277099579	3.15310092520652	3.28190242081156	-0.360447905712541	0.500436308403997	0.768850577358824
Merged-chr11-120767266-2	chr11	120767166	120767366	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16938.0	NM_009053	19719.0	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	3.28007284556548	2.94749477686836	2.99551350461062	2.53580091711003	2.77841155096174	3.10898533261837	3.21409530668295	3.17203260158964	0.457376204716075	0.493658019904375	0.76443641384444
Merged-chr8-106563757-4	chr8	106563666	106563866	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23377.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	5.73939429963391	5.26888301835765	5.47115886842795	5.5271710649696	5.58539282682472	5.30348141459123	5.41615231624323	5.15915926052936	-0.218563304983186	0.458858253021486	0.741615730170609
Merged-chr16-37440717-3	chr16	37440626	37440826	+	750.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55768.0	NM_172440	207227.0	Mm.80170	NM_172440	ENSMUSG00000022829	Stxbp5l	9430094L02|A830015P08Rik|LLGL4|T2dm1|t2md1|tomosyn-2	syntaxin binding protein 5-like	protein-coding	3.41923804398327	3.24966111658355	3.41969322055576	3.53232730996125	3.51962042998896	3.47628061763747	3.23250309365731	3.41785235173161	0.0111959084831914	0.982792375305966	0.993865312500427
Merged-chr2-124666583-3	chr2	124666506	124666706	+	954.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172537, exon 17 of 17)	3' UTR (NM_172537, exon 17 of 17)	13025.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	3.65678955806487	3.47743786012886	3.54233877266923	4.18717231069684	3.8397052874754	3.53138593238091	3.97562497626519	3.70909294232424	0.0245928285883366	0.963438158522736	0.986954574291407
Merged-chr11-77984419-6	chr11	77984268	77984468	+	946.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174852, intron 2 of 14)	CpG-2283	1552.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	3.77879207541656	3.80315977578331	3.82902448801262	3.67348623348565	3.80563074592654	3.84629242494302	3.54633731390391	3.82675799503683	-0.00836870486098054	0.985374157935477	0.994679311230532
Merged-chr4-125127930-4	chr4	125127825	125128025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153159)	promoter-TSS (NM_153159)	-44.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	7.81932914027159	8.21443670477156	7.44090825697221	7.4532845483093	8.04385195747013	7.97514608326019	7.91930211480877	7.8748163550801	0.241217944992266	0.266565484967311	0.578223296871566
Merged-chr1-54829430-1	chr1	54829330	54829530	+	822.0	f0_balb.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	96957.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	3.70919643664372	3.67983741625021	3.44846623498362	3.7637706903369	3.22627356965675	3.23354486470374	3.43562001854405	3.7074844782468	-0.828813326886641	0.119929365941841	0.383350652881906
Merged-chr10-95973480-4	chr10	95973380	95973580	+	868.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001932, intron 1 of 28)	intron (NM_001001932, intron 1 of 28)	32817.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	4.32090454050251	4.53119329130119	3.81570650811409	3.5617740720086	4.0126300752675	4.14923547341553	3.74373091033238	3.69651422812526	-0.528248095400035	0.314837235202105	0.626803278913516
Merged-chr9-21528074-4	chr9	21527964	21528164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198794, intron 1 of 6)	L2b|LINE|L2	1887.0	NM_206536	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	8.43737886792928	8.38302754041275	8.23663580915803	8.40995967426596	7.93838509597351	8.01660935847077	8.14485776329401	7.91792165433483	-0.467079837908576	0.00302613001361361	0.0321994576035419
Merged-chr3-89202885-4	chr3	89202780	89202980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008094)	promoter-TSS (NM_008094)	-45.0	NM_001077411	14466.0	Mm.5031	NM_008094	ENSMUSG00000028048	Gba	GBA1|GC|GCase|GLUC|betaGC	glucosidase, beta, acid	protein-coding	6.22600327305865	5.93089585920477	5.75245629711062	5.94547138399933	6.05892795354537	5.9556097466385	5.55708606464387	6.35851063280585	0.0678484176542623	0.807717485144669	0.92582798360164
Merged-chr3-83839622-4	chr3	83839530	83839730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011905, intron 2 of 2)	RSINE1|SINE|B4	1978.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	7.99318496557703	8.01215613566186	8.25063914661824	8.29347277819461	7.7500559252392	7.749518414915	7.79802145721177	7.9267122141614	-0.443173126633754	0.00903335683306409	0.0733415428334287
Merged-chr9-62510722-4	chr9	62510622	62510822	+	937.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175484, intron 1 of 11)	intron (NM_175484, intron 1 of 11)	26322.0	NM_175484	235431.0	Mm.335229	NM_175484	ENSMUSG00000041729	Coro2b	CLIPINC|E130012P22Rik	coronin, actin binding protein, 2B	protein-coding	4.91806979314888	4.86669115178058	4.48980694366166	5.35604374606835	4.81505443888965	4.62241280335949	4.64119696115944	4.2882797686228	-0.726316454088433	0.0699330908118868	0.283004304313503
Merged-chr5-23616618-4	chr5	23616542	23616742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009274)	promoter-TSS (NM_009274)	-71.0	NM_009274	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	5.16516390137407	4.58026763353873	5.0073087443847	4.90151535290705	4.95788812312506	4.96305256663835	5.22605955169889	5.03725268061721	0.24362924816818	0.461758610896651	0.743501704400988
Merged-chr11-59518399-4	chr11	59518317	59518517	+	980.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11777.0	NM_172941	268417.0	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	5.09958585564925	5.07097359154896	4.92007405905301	5.28961337613178	5.48374652624647	4.84782213128774	5.10857148460798	5.4968765316211	0.291688874183104	0.379329966242926	0.681912556312798
Merged-chr13-9424693-4	chr13	9424596	9424796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	MTA_Mm|LTR|ERVL-MaLR	148171.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	5.73509625185019	5.48899176329356	5.94197491605471	5.27911085009136	5.7846210344079	6.11537453964563	5.68198439227313	5.91645129054178	0.437087445853333	0.131556611381433	0.403884754863878
Merged-chr15-25563896-4	chr15	25563792	25563992	+	875.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58658.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	4.53138443836144	5.09523095041929	4.44327829732508	3.78379585631935	4.93440455256658	5.13622142672684	4.37667481641947	4.44043507305127	0.439152483100876	0.364441701481862	0.669279814395716
Merged-chr4-139611751-2	chr4	139611633	139611833	+	725.5	f0_balb.idr|f1_balb.idr	intron (NM_001205173, intron 5 of 8)	intron (NM_001205173, intron 5 of 8)	-11161.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	3.72782194329226	3.73527873048745	3.57720661196612	3.39754617789635	3.44456087318574	3.63943305038554	3.20018123021851	3.6777537207271	-0.352689653173991	0.500580821682519	0.768850577358824
Merged-chr6-120197010-3	chr6	120196886	120197086	+	710.833374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347432, intron 1 of 3)	intron (NM_001347432, intron 1 of 3)	3163.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	3.50272015426108	3.41368357948682	3.39742652492594	3.42396793518316	3.16834211964289	3.26597948510929	3.21014177975807	3.64291665916278	-0.361543268022991	0.501132430770598	0.769100353388826
Merged-chr1-105993951-4	chr1	105993855	105994055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 1 of 12)	CpG	3549.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	6.77724442745698	7.00660743811789	6.84703438740883	6.80247787332967	6.43754900141883	6.8056519606479	6.77172950221318	6.50777019169129	-0.325695968277672	0.123011321758188	0.388853882463297
Merged-chr11-59839377-4	chr11	59839278	59839478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011991, intron 1 of 11)	CpG	389.0	NM_011991	26572.0	Mm.40	NM_011991	ENSMUSG00000019373	Cops3	Csn3|Sgn3	COP9 signalosome subunit 3	protein-coding	6.73235269856041	6.89562014880259	6.26989505337228	6.55684214074117	7.13698247955021	6.99681723448326	6.97806376910586	7.1116738140122	0.598500648150954	0.00561998411314021	0.0517831519986029
Merged-chr2-137116136-3	chr2	137116046	137116246	+	748.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013822, intron 1 of 25)	CpG-8595	374.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	3.51701808756872	3.82295651165292	4.07703334584556	3.54108458452837	3.39297282341532	3.51118365467513	3.44523673789447	3.67988514808496	-0.777323358910739	0.13363981476506	0.407015034665277
Merged-chr15-8098063-4	chr15	8097954	8098154	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358788, intron 2 of 3)	B3|SINE|B2	1155.0	NM_001358788	545085.0	Mm.321312	NM_001081402	ENSMUSG00000039828	Wdr70	4833422F06Rik	WD repeat domain 70	protein-coding	4.08354646015981	4.48844975051762	4.03000574178048	3.73427640640057	4.64128409366407	4.4999263827559	4.50784982030379	4.52662809958826	1.06724283716811	0.0111326466641436	0.0851505111656005
Merged-chr1-23382764-4	chr1	23382668	23382868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081079, intron 1 of 6)	CpG	407.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	5.27568794518397	5.13359608203386	5.18816252935935	4.97050922544537	4.69395915824004	4.97708617227292	5.06810421915855	5.35540569425893	-0.192550476935663	0.563123066893591	0.806111856556282
Merged-chr14-30631258-4	chr14	30631145	30631345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5037.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	6.00837812923453	6.02231977327814	5.98832327581598	6.03409179734807	5.89895175125857	5.79803374122632	5.93641261072534	5.61631266386335	-0.307024614001981	0.207655737031573	0.511674030054016
Merged-chr7-19304762-3	chr7	19304670	19304870	+	916.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008036, exon 4 of 4)	3' UTR (NM_008036, exon 4 of 4)	5275.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	3.95157310065184	4.40072375686067	3.6187517071701	3.72636146626613	4.10527090220271	4.02459947374915	3.8344576511761	3.89984460525072	0.038813054052213	0.936157305312281	0.976869657372429
Merged-chr4-133830583-4	chr4	133830508	133830708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	44123.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	5.62362520294529	5.28769891503143	5.21567388839074	5.01926352740845	5.80048215426588	5.72142132361839	5.62054327428318	5.5697036360365	0.695255818839505	0.0169178447163087	0.114217515798363
Merged-chr13-51844837-4	chr13	51844714	51844914	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1861.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	4.62166964206938	4.89271520251485	4.49091166496861	4.56028689926956	4.79776050338434	4.83772170182447	4.98928045918585	4.81235950471503	0.441820923811334	0.193968289860769	0.494306287064541
Merged-chr10-34034113-3	chr10	34034015	34034215	+	835.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3482.0	NM_001162937	692132.0	Mm.383415	NM_001162937	ENSMUSG00000071340	Trappc3l	Bet3l	trafficking protein particle complex 3 like	protein-coding	3.60134593253533	3.52092868663829	3.98116839323136	3.73316375447571	3.60647742137585	3.7189707058873	3.64125272138279	3.48467225830586	-0.32626028653051	0.502120190703036	0.769457185302407
Merged-chr10-51450607-2	chr10	51450507	51450707	+	774.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-30005.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	3.16082099468432	3.28253774605373	3.28793704125115	3.39182765615625	3.73773045355084	3.40026803809937	3.54423745247628	3.28631989876754	0.75094393378349	0.158260576498244	0.445134872270402
Merged-chr19-41346653-4	chr19	41346551	41346751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	38419.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	5.99845664371658	6.14070434241298	6.24327752621116	5.75624508781817	6.48807267343488	5.9849349253436	6.41414837328967	5.87806307178977	0.298930682009153	0.272252072060429	0.583764802661998
Merged-chr8-105259949-4	chr8	105259854	105260054	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033161, exon 3 of 5)	exon (NM_001033161, exon 3 of 5)	4640.0	NM_001033161	71609.0	Mm.264255	NM_001033161	ENSMUSG00000031887	Tradd	9130005N23Rik|AA930854	TNFRSF1A-associated via death domain	protein-coding	4.89136764536008	4.7022744000814	4.82441407711536	4.59727072749833	4.64455430397224	4.59614762533817	4.61577937070498	4.74964274041243	-0.197362328403295	0.565967822307648	0.807783748011785
Merged-chr16-92441059-3	chr16	92440969	92441169	+	775.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	25100.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	3.8206580178633	3.77256853544391	3.67959223213566	3.84016348113221	3.022762782975	3.51902074125867	3.04572468739349	3.67735831797922	-1.48406529075296	0.0128717468465404	0.0944513091032085
Merged-chr2-72379608-4	chr2	72379508	72379708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 8 of 19)	intron (NM_023057, intron 8 of 19)	93907.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	5.51275013980176	5.39990704898046	5.40085804172326	5.58968059321298	5.2931474312492	5.45355527082741	5.3140550539393	5.77597509627115	-0.0323711071288037	0.910364952216583	0.966671146059764
Merged-chr10-12592171-3	chr10	12592061	12592261	+	733.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 50 of 73)	MTD|LTR|ERVL-MaLR	269574.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	3.02578084431726	3.36300095658116	3.30926112225852	3.6381208548397	3.61216035516937	3.71440682233878	3.9331263884215	3.42987591852952	1.02111957181538	0.0805084904199612	0.307744688233844
Merged-chr17-34031678-4	chr17	34031573	34031773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205216)	promoter-TSS (NM_001205216)	17.0	NM_001077709	14977.0	Mm.18556	NM_008202	ENSMUSG00000024327	Slc39a7	AA408174|AI117660|AL024048|H-2Ke4|H2-Ke4|Ke-4|Ke4|Ring5|Zip7	solute carrier family 39 (zinc transporter), member 7	protein-coding	7.63084492991412	7.5767502543194	7.16596095954896	6.96040914023876	7.81396459676336	7.74121111135203	7.30824028317784	7.51438244802889	0.342086925903849	0.134964175100849	0.408931339158154
Merged-chr14-45666313-1	chr14	45666213	45666413	+	641.5	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8170.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	2.836169187872	2.89378626347356	2.89782392644611	2.420813283799	2.91819458458305	2.94639134752772	2.55244552170075	2.95465967351313	0.360094265703139	0.604156670571748	0.82838780348718
Merged-chr8-105269783-4	chr8	105269688	105269888	+	962.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256044)	promoter-TSS (NM_001256044)	-13.0	NM_011939	26386.0	Mm.89204	NM_011939	ENSMUSG00000033249	Hsf4	HSF 4|HSTF 4|HSTF4|ldis1|mHSF4	heat shock transcription factor 4	protein-coding	5.52693156314024	5.44201658729072	5.08339403586438	5.70618453056364	5.47160733758873	4.99045367647387	4.94887960889599	5.00712620886755	-0.600914697462645	0.0726044666314678	0.289746206008143
Merged-chr13-23432738-4	chr13	23432629	23432829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1712.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	6.69366917961478	7.16470497620368	6.14824010966752	6.64818240440968	7.09569693962878	6.87208747187693	7.11592259446407	6.72032678286282	0.347146317981634	0.182282476752359	0.47878218634963
Merged-chr18-21001752-4	chr18	21001640	21001840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303011)	promoter-TSS (NM_001303011)	-217.0	NM_207623	56515.0	Mm.253542	NM_019706	ENSMUSG00000024317	Rnf138	2410015A17Rik|2810480D20Rik|STRIN|Trif|Trif-d	ring finger protein 138	protein-coding	9.35709853064477	9.63005869559978	9.66386878857913	9.59165198144173	9.58355418204951	9.64600661117263	9.67568801902138	9.3978001962454	0.0159691410261034	0.91412840874501	0.967873172075434
Merged-chr14-51253754-4	chr14	51253639	51253839	+	888.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25B|LTR|ERVK	2373.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	4.34026909036904	4.65613139638028	4.79177407021477	4.80392160846506	4.27994426869703	4.2199794865563	4.22917862410671	3.97804393611495	-1.13869465653087	0.00442035087637191	0.0433562291620885
Merged-chr1-156534136-4	chr1	156534001	156534201	+	935.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24686.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	4.81835210992469	4.47895714446291	4.4245494024309	4.81352180845956	4.3457879834063	4.2163099648192	3.96156260028334	4.1920246093859	-1.08571243530923	0.00739649716428577	0.0633773048822315
Merged-chr16-22015782-4	chr16	22015688	22015888	+	960.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027488, intron 3 of 16)	intron (NR_027488, intron 3 of 16)	6304.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	5.09798676209668	4.99481601486503	4.8325096633441	4.97971029287759	4.73357765766424	5.20833057046032	4.77214316244408	4.17147462011866	-0.425781263503678	0.271980207453242	0.583575846845515
Merged-chr3-30600853-4	chr3	30600780	30600980	+	964.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1010.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	4.48842228427469	4.10262104533637	4.44903416452893	4.45273891658373	4.45674859976421	4.19910774352987	4.10961909810548	4.76736573425759	0.0669911356657432	0.870975326659938	0.951515750732959
Merged-chr4-19569667-2	chr4	19569573	19569773	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027769, intron 1 of 15)	CpG	435.0	NM_027769	70568.0	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	4.28054786700166	4.14583388768989	4.36864981250114	4.04260307099794	4.29572142667149	4.36282684533276	4.34867617948136	4.66487684418572	0.534010921208323	0.172406047997279	0.465824859186088
Merged-chr10-24160575-4	chr10	24160492	24160692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	11275.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	5.8313640795553	5.27702242201562	5.41581683709605	5.80862946417043	5.79876896136093	5.4985678059765	5.71125337204878	5.75996197711368	0.142591926983132	0.620883984531264	0.837513287123841
Merged-chr10-40258161-4	chr10	40258062	40258262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026113)	promoter-TSS (NM_026113)	-450.0	NM_001359492	67371.0	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	5.72182346987012	5.56297586684416	5.67318676087215	5.47606221225684	5.61101518556306	5.79642612480559	5.99315267792576	5.38716287319374	0.186612550235336	0.502925506293521	0.770059040429938
Merged-chr17-27708173-4	chr17	27708108	27708308	+	842.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286743, intron 9 of 9)	intron (NM_001286743, intron 9 of 9)	20743.0	NM_013891	30051.0	Mm.26768	NM_013891	ENSMUSG00000024215	Spdef	PDEF|Pse	SAM pointed domain containing ets transcription factor	protein-coding	3.666414920228	3.57800159765575	3.76815964090212	3.56901951582323	3.84476008402772	3.83641151967189	3.65227882849192	3.49727750393031	0.243692397619991	0.606143799536157	0.829351704182035
Merged-chr1-74258837-3	chr1	74258740	74258940	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 7 of 10)	U6|snRNA|snRNA	-19760.0	NM_174985	227289.0	Mm.246587	NM_174985	ENSMUSG00000064272	Gpbar1	BG37|GPCR|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding	3.38624482405012	3.44901319848833	4.00869690494004	3.7977293629411	3.71338336021054	3.68925412966402	3.76874138917129	3.78259799162193	0.146924949889856	0.769055265752084	0.90964446742942
Merged-chr6-94221925-3	chr6	94221811	94222011	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130996, intron 1 of 1)	URR1B|DNA|hAT-Charlie	15531.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	4.33778254403926	4.75273657658319	4.52369531963474	4.53486736332898	3.25275629183111	3.59361567412544	3.84640178042751	3.61076835761349	-2.9120675407402	4.22537401635838e-08	1.96959985010068e-06
Merged-chr15-31468004-3	chr15	31467896	31468096	+	731.600037	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 22 of 25)	MTB|LTR|ERVL-MaLR	-14307.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	3.78466334986422	3.54252009062408	3.54076326659223	3.1225712293267	3.63551325446677	3.5446102207889	3.22903357101426	3.59144613951445	0.00442008440065029	0.993622701738067	0.997702270136287
Merged-chr7-43349840-4	chr7	43349766	43349966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-1475.0	NM_001271019	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	7.03133716796169	6.66856829550518	7.04404649418815	6.08926471272595	6.73213984578462	6.56112845049663	7.07490367367186	6.72959779996154	0.0551475913227273	0.842295374806611	0.940176660530117
Merged-chr10-80922100-4	chr10	80922039	80922239	+	983.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3894.0	NM_010722	16907.0	Mm.7362	NM_010722	ENSMUSG00000062075	Lmnb2	-	lamin B2	protein-coding	4.55278317401671	4.56989481660253	4.74599998663634	4.62037260994308	4.60660265637094	4.45619571363899	4.79197403829399	4.6694806681873	0.0307941275163804	0.929540221157498	0.974529677606963
Merged-chr11-69921527-4	chr11	69921422	69921622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166596)	promoter-TSS (NM_001166596)	-136.0	NM_181582	276770.0	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	8.60438040857367	8.87599376377608	8.58695218868141	8.31893808635032	8.97994607839041	8.98969102190734	8.62983989099699	8.80993052439484	0.317604567259113	0.0787935791342397	0.30375505411597
Merged-chr18-80151055-4	chr18	80150939	80151139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175028, intron 1 of 3)	C-rich|Low_complexity|Low_complexity	443.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	6.33988500551528	6.4403968119917	6.55148441733267	6.42176247216785	6.53269591928817	6.74339535176107	6.64044380104145	6.7545939015202	0.327895153466192	0.114803447890014	0.37489538089477
Merged-chr16-38693543-3	chr16	38693437	38693637	+	661.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	MTD|LTR|ERVL-MaLR	19498.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	3.64584213276416	3.4604508309093	3.48267495766085	3.51789904795713	3.60529000323599	3.19141483332077	3.94285905335583	3.74263825272232	0.385154196748266	0.463615755174386	0.744914352992271
Merged-chr15-76670215-3	chr15	76670112	76670312	+	798.422241	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007989)	promoter-TSS (NM_007989)	-264.0	NM_007989	14106.0	Mm.42011	NM_007989	ENSMUSG00000033837	Foxh1	Fast1|Fast2|fast-1|fast-2	forkhead box H1	protein-coding	3.47519714693115	3.94935193939824	3.26347145337977	3.04569978878339	4.35010904464404	4.04665978488179	3.94842754621478	3.91805838091011	1.75618463296614	0.00167056092585171	0.0203124113667918
Merged-chr13-99315019-4	chr13	99314909	99315109	+	934.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29669.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	4.9483949617284	4.9860789673511	4.87803842195853	5.04769449936208	5.06369301774444	5.01484740208438	4.65941877367714	4.8748047734537	-0.108151681232002	0.738786497592856	0.89698683073579
Merged-chr2-27560964-4	chr2	27560879	27561079	+	916.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45832.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	4.66827457982037	4.71839530020958	4.43936243499517	4.67680555889849	4.38131782043037	3.92834185050409	4.28804930851447	4.3498332993678	-0.877093377180935	0.0261862598285014	0.153294825917666
Merged-chr6-33980928-8	chr6	33980844	33981044	+	903.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48504.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	3.03828229941293	3.01745454058001	3.41234858276332	3.07993609793945	3.72348039099093	3.47270519168979	3.22675811635132	3.61045835651517	1.36195168439235	0.0140565690246838	0.100291759559711
Merged-chr7-43642492-1	chr7	43642392	43642592	+	1000.0	f0_c57.idr	intron (NM_028236, intron 4 of 5)	B1_Mus1|SINE|Alu	7753.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	5.09372129377105	5.60692956916749	5.3293692793329	4.54816016399964	5.37314121949617	5.77750720496832	5.59972854948534	5.69520057252616	0.747540828449604	0.0351947553776599	0.185964478734055
Merged-chr11-95666877-4	chr11	95666788	95666988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008831)	promoter-TSS (NM_008831)	-69.0	NM_008831	18673.0	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding	7.57639144536616	7.64111707014772	6.92474643518421	7.08105651517573	7.72642156704202	7.73743270160427	7.28343126108761	7.62316033566748	0.356448566647661	0.122675329331579	0.388184087959568
Merged-chr12-85885204-4	chr12	85885080	85885280	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 12 of 32)	MTD|LTR|ERVL-MaLR	60230.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	5.70754558174648	4.42263001311432	5.21733739933584	5.61592605758084	4.87395589328479	4.84482208366513	5.03213261572242	4.90932528118993	-0.786565595887695	0.0516067416416846	0.236134158252641
Merged-chr15-76327433-4	chr15	76327348	76327548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175399)	promoter-TSS (NM_175399)	51.0	NM_175399	109075.0	Mm.322752	NM_175399	ENSMUSG00000034259	Exosc4	1110039I09Rik|1500001N04Rik|Rrp41	exosome component 4	protein-coding	7.06243797549907	7.28425333895475	7.07579856319447	7.03042864158275	7.14591565767783	7.09901329618114	7.18762771480536	7.17504571959193	0.0526090119754647	0.775535742534303	0.912391634160948
Merged-chr16-21423732-2	chr16	21423632	21423832	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285894, intron 1 of 45)	intron (NM_001285894, intron 1 of 45)	614.0	NM_001285894	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	3.56923703906173	3.87250074257081	3.99512630127447	4.00796993283366	3.70781072086644	4.07106969852637	3.93188533425045	3.79753815824372	-0.00871287316250299	0.985001708090119	0.994516675368757
Merged-chr2-34807052-3	chr2	34806939	34807139	+	962.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164769, exon 7 of 7)	3' UTR (NM_001164769, exon 7 of 7)	-7127.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	3.88099522950193	3.5928039021168	4.02002853710586	3.96238839556054	3.71927551771784	3.95222148688617	3.76494102112331	3.82962575092471	-0.179778046561184	0.694198135860727	0.875779038167184
Merged-chr11-79993774-3	chr11	79993672	79993872	+	859.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199196, intron 1 of 15)	CpG	666.0	NM_199196	52615.0	Mm.283410	NM_199196	ENSMUSG00000017548	Suz12	2610028O16Rik|AI195385|AU016842|AW536442|D11Ertd530e|mKIAA0160	SUZ12 polycomb repressive complex 2 subunit	protein-coding	3.35259650467615	3.38071949575022	3.19331740051493	2.7284549918803	3.20069716714052	2.98359306833557	2.93500094268457	3.07305625040785	-0.514893209314233	0.421307599122075	0.713933904636989
Merged-chr5-25166826-4	chr5	25166736	25166936	+	760.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14644.0	NM_026449	67909.0	Mm.141471	NM_026449	ENSMUSG00000028938	Galntl5	1700021B12Rik|Galnt15	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5	protein-coding	4.19606859141556	4.37021348836763	4.37770853271927	4.80274875183375	3.84202786427654	4.27382358132077	4.27132474949437	4.495442728446	-0.568986643481063	0.19614021188705	0.497142134936562
Merged-chr16-97480991-4	chr16	97480887	97481087	+	859.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020622, intron 3 of 7)	MTE2b|LTR|ERVL-MaLR	-18081.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	5.0271285348235	4.46132631102056	4.61361742492188	5.13272932879624	5.26333494786185	4.79223985903302	4.79582864647638	5.05624504934032	0.291622861312969	0.438040259463232	0.726196986801756
Merged-chr11-98729438-4	chr11	98729323	98729523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011869)	promoter-TSS (NM_011869)	12.0	NM_001361995	23989.0	Mm.246493	NM_011869	ENSMUSG00000017210	Med24	911GSE|AU040102|AW547152|D11Ertd307e|DRIP100|Gse2|Pparb2|Pparbp2|R75526|Thrap4|Trap100	mediator complex subunit 24	protein-coding	6.10983963430064	6.18289284607602	5.61998592893381	5.66996538403951	6.11985087299087	5.90627209081382	5.97941186407041	5.72525490782927	0.0568765384640316	0.837148755956283	0.938189376728559
Merged-chr8-95320435-3	chr8	95320304	95320504	+	863.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199455, intron 4 of 7)	intron (NM_199455, intron 4 of 7)	8806.0	NM_199455	73407.0	Mm.472783	NM_028532	ENSMUSG00000090206	Tepp	1700055M20Rik	testis, prostate and placenta expressed	protein-coding	3.75264301550644	3.85286133785345	3.55542357860761	3.62419966702262	3.14244227518703	3.30044902608519	3.48710964764075	3.44195643893834	-1.2285260563381	0.0202796844592298	0.129238101158064
Merged-chr9-74976125-4	chr9	74976029	74976229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153584)	promoter-TSS (NM_153584)	18.0	NM_153584	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	7.3338071494804	7.24061096740942	7.35557251200127	7.57279424705488	7.24353968983169	7.3113141399723	7.70772292961223	7.32996691287806	0.0247744172770272	0.901103221294446	0.963342914941175
Merged-chr19-34240761-4	chr19	34240661	34240861	+	987.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360716)	TTS (NM_001360716)	8136.0	NM_001360720	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	4.81312965288764	5.31064064588309	5.24774996326192	5.36982229419068	5.84958674488725	5.49105480007227	5.99615911730676	5.76195333116408	0.979240940344793	0.0012190908830637	0.0157569765690197
Merged-chr16-21689364-4	chr16	21689262	21689462	+	968.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	ORR1D2|LTR|ERVL-MaLR	5303.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	5.29564773444867	5.28945209674466	5.80147752203072	5.40927394916921	5.48871737644956	5.34290615346349	4.99661058711258	5.35349495153559	-0.259183288666142	0.402656475434138	0.700127312540977
Merged-chr5-5494476-4	chr5	5494379	5494579	+	781.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15336.0	NM_001200025	381716.0	Mm.276086	NM_001200025	ENSMUSG00000079666	1700015F17Rik	Gm1686	RIKEN cDNA 1700015F17 gene	protein-coding	4.35281216418214	4.32740340396964	4.30771182963624	4.58854215927555	4.4661755278782	4.38835474262854	4.1428475078261	4.89060423730706	0.205838937954833	0.612309029087169	0.832715671052909
Merged-chr16-96083069-2	chr16	96082957	96083157	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_176928)	promoter-TSS (NM_176928)	-629.0	NM_145125	93871.0	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	6.51695006948164	6.9916163109751	6.39607984864584	6.1093451131924	6.77256628640196	6.59136406269152	6.69714528126655	6.33541262358023	0.110318369305469	0.679398365774595	0.868421080297918
Merged-chr12-55499222-4	chr12	55499090	55499290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6543.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	5.59028497310392	5.68459544615332	5.3009395087443	5.35688033460772	5.67899821794997	5.99879097621733	5.33788375977937	5.23050942156438	0.186347450730198	0.549285982731736	0.797943323500189
Merged-chr2-32912604-4	chr2	32912497	32912697	+	974.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 5 of 13)	intron (NM_146119, intron 5 of 13)	36463.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	5.20361118698251	5.5512817808082	5.02445183801436	5.35621802520054	5.46872166044225	5.9153104198	5.00048893268771	5.55132881084196	0.377992375319544	0.254882385933022	0.566361981341947
Merged-chr9-110706994-4	chr9	110706897	110707097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 2 of 6)	intron (NM_028312, intron 2 of 6)	35613.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	6.95522635002748	7.04017757354307	6.89161507801752	6.99604152461603	7.0206430800752	6.86722227981549	6.78862054387871	6.57100613600915	-0.201191488758838	0.322072999147811	0.633560664104514
Merged-chr10-27369970-2	chr10	27369860	27370060	+	812.150024	f0_balb.idr|f1_balb.idr	intron (NM_008481, intron 4 of 63)	Lx8b|LINE|L1	-19906.0	NR_131034	75855.0	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA	3.95494160026439	3.61813300318151	3.64647221033878	4.35444650268993	2.86540001133182	2.97430766884915	2.93466295246151	3.02147309303193	-4.89979317007317	3.30900217034673e-07	1.27108184286622e-05
Merged-chr9-108649396-4	chr9	108649292	108649492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011790)	promoter-TSS (NM_011790)	16.0	NM_011790	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	7.70811377893937	8.07162063610121	7.7260509675737	7.39504342460024	7.96836527744358	7.96807190087909	8.09900563667624	8.09000102746187	0.378112734047891	0.0535342511621641	0.241523386161607
Merged-chr13-111933727-4	chr13	111933619	111933819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65783.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	6.41174269220918	6.4601738227025	6.53145103788118	6.72148067423384	6.34044012807916	6.378437766755	6.43203163667111	6.66432860498882	-0.137132603259494	0.536870363887993	0.7907850267193
Merged-chr7-127042479-4	chr7	127042360	127042560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145588)	promoter-TSS (NM_145588)	-40.0	NM_145588	110033.0	Mm.286488	NM_145588	ENSMUSG00000030677	Kif22	AU021460|C81217|Kid|Kif22a	kinesin family member 22	protein-coding	6.17860554829236	6.28555266939154	6.05420919784831	5.74901769195896	6.53766409691381	6.6058174006239	6.12804156375007	6.07165883943608	0.444791331077678	0.0934502905277231	0.334349554090817
Merged-chr10-11281757-3	chr10	11281660	11281860	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168297, intron 1 of 2)	CpG	173.0	NM_001168297	71865.0	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	5.04569062813498	4.81584298188229	5.40958274322484	4.69903634760781	4.57628286679811	4.93456739221121	4.65147649765365	5.27847528865097	-0.248089597169649	0.518939516513735	0.779784159385488
Merged-chr10-81257401-4	chr10	81257253	81257453	+	952.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285854)	promoter-TSS (NM_001285854)	54.0	NM_001285853	17179.0	Mm.2918	NM_010768	ENSMUSG00000004933	Matk	CHK|HYL|Ntk|p56ntk	megakaryocyte-associated tyrosine kinase	protein-coding	3.9192800796837	4.11524399744896	4.37809170978016	3.86914591398977	4.43254283504692	3.92719416657547	4.0577529385658	4.37518677682997	0.374173725495712	0.396993878463936	0.695569405558829
Merged-chr2-161214815-2	chr2	161214715	161214915	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105729.0	NR_126509	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	2.9100131067773	2.813868471339	3.02858301925403	2.64130755388234	2.89036692717392	2.9554705038418	3.01638042822557	2.90890774242479	0.435627503713685	0.476757736775617	0.753110052062842
Merged-chr18-24178917-4	chr18	24178827	24179027	+	970.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-26417.0	NM_013814	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	4.26981415245412	4.69427839011748	4.53926858563595	4.74594238748542	4.53774237325299	4.18094544566675	4.70408608337487	4.5761035553317	-0.157563332734529	0.684368635769596	0.870717436816212
Merged-chr1-65113005-4	chr1	65112914	65113114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175293, intron 5 of 7)	intron (NM_175293, intron 5 of 7)	-9651.0	NM_007774	12964.0	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	7.25209132871623	7.26054113598056	7.38918965071038	7.59197368898813	7.51073026850579	7.27828864015841	7.43845867622426	7.47943490989859	0.0544417660799553	0.771490477473899	0.910379161490028
Merged-chr7-3442845-4	chr7	3442742	3442942	+	935.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18180.0	NM_133183	54378.0	Mm.424047	NM_133183	ENSMUSG00000078815	Cacng6	2310033H20Rik	calcium channel, voltage-dependent, gamma subunit 6	protein-coding	4.53569088977554	5.05313980270767	4.57566968041602	4.11973895839594	4.17437479199954	4.35162435850316	4.34664820223494	4.49301417193731	-0.607882198829049	0.158213952648894	0.445101416370722
Merged-chr8-83141043-4	chr8	83140931	83141131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24321.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	6.2447680382491	5.8626240398259	5.99518461276117	6.42402557257593	5.7824258244929	5.59101499288037	5.70631670676781	5.83194179719662	-0.685953518944457	0.0100813462785957	0.0793959002837094
Merged-chr2-163645815-5	chr2	163645660	163645860	+	972.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012032)	promoter-TSS (NM_012032)	-617.0	NM_012032	26943.0	Mm.218473	NM_012032	ENSMUSG00000017707	Serinc3	AA959945|AA960047|AIGP1|DIFF33|TMS-1|Tde1	serine incorporator 3	protein-coding	4.45355665407755	4.34414483498117	4.49716274056468	4.37651290863841	4.53722971005898	4.67118392681229	4.29764093512533	5.06154077873615	0.561864464195451	0.144177847151162	0.42300131826275
Merged-chr15-36648043-4	chr15	36647927	36648127	+	995.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39054.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	5.16945488810857	4.71485635737424	4.73520434443729	4.62377350817108	5.21820994066087	5.18180192872034	5.23285673778898	5.48978694729593	0.910330215580189	0.00510129416708591	0.0482083135314668
Merged-chr6-116671538-7	chr6	116671342	116671542	+	887.761902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	intron (NM_178045, intron 1 of 10)	2394.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	4.07049403440503	4.41234962471475	3.84184486303912	4.05098884249341	4.46744410671933	4.52623112678365	4.33455257525463	4.61809803538287	0.905081147034976	0.0251840488238124	0.149157547947258
Merged-chr1-135534923-4	chr1	135534814	135535014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 2 of 28)	intron (NM_173437, intron 2 of 28)	50441.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	6.67840258976455	7.01341737022457	6.8313244974126	6.78184320948212	6.34469830824437	6.33998676605353	6.21418466477182	6.3409777714467	-0.755969735877726	0.000375621523826359	0.0061055867651145
Merged-chr4-129066489-3	chr4	129066377	129066577	+	727.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	L1_Mus2|LINE|L1	8206.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	3.42061889039685	3.57397765200291	3.19014790870534	2.60584365523256	3.31013995904063	3.42761920348691	3.23921529616791	3.30882151540772	0.232679633501661	0.72613804046658	0.891025770427008
Merged-chr17-17873643-3	chr17	17873506	17873706	+	803.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	10333.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	3.21602122847172	3.18478216332874	3.35559579079947	3.16256515751471	3.81676967563834	4.14859430403158	4.03998946439342	3.70257191995752	2.27364236204709	6.14482419581246e-06	0.000178377830927298
Merged-chr19-26666554-4	chr19	26666471	26666671	+	886.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 10 of 32)	intron (NM_011416, intron 10 of 32)	61411.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	5.16965081423312	4.75263455187112	5.20063834390392	5.33869304126586	4.91925147418763	4.78705030945464	5.08302308956646	5.13615189902251	-0.299735027193528	0.368857100134982	0.673271092689196
Merged-chr11-82039056-7	chr11	82038939	82039139	+	832.7023929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3462.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	3.62505031083889	3.49812466125934	3.73744378218807	3.50537681259761	3.86616176353756	4.14936434158729	3.96302033295335	3.88679795739887	1.11964641748397	0.012984608564619	0.0949000362481791
Merged-chr7-28347947-4	chr7	28347841	28348041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2748.0	NM_013647	20055.0	Mm.702	NM_013647	ENSMUSG00000037563	Rps16	AA420385|AI317031	ribosomal protein S16	protein-coding	5.91795796526378	6.09213050978728	5.87192509353071	6.16435656465154	6.05565145100798	5.94879069691809	6.08075150975155	6.02551863664071	-0.00250490221334894	0.99164727951762	0.996773303789061
Merged-chr9-86479274-4	chr9	86479155	86479355	+	894.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177208, intron 1 of 38)	intron (NM_177208, intron 1 of 38)	12101.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	4.13416509530948	4.3093642825901	3.92894272094882	4.28631170531795	4.20265344677713	4.20967876585778	4.51855210577814	4.2249931268412	0.274056331450239	0.502125083774799	0.769457185302407
Merged-chr1-74437568-4	chr1	74437468	74437668	+	853.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310662, exon 24 of 24)	3' UTR (NM_001310662, exon 24 of 24)	28184.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	4.28180420492845	4.46323725924095	3.70084554892045	3.73583521328383	4.38353673680922	4.45383983273279	4.12920290190794	4.2363352927197	0.555299960716963	0.233633601950667	0.543386420841631
Merged-chr4-130913292-4	chr4	130913190	130913390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010686)	promoter-TSS (NM_010686)	-44.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	7.01570207916652	6.76628298771881	6.56201787427043	6.89222344453788	6.77422204702357	6.97230935159935	6.85669067593684	6.93834644108374	0.0821339041735683	0.689464484545712	0.873414119482438
Merged-chr4-53126939-4	chr4	53126834	53127034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	32961.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	8.07007804252432	8.42636192050711	8.57870852194135	8.38807951846896	8.08528865839584	8.21535321992278	8.16521487557348	8.07267740158169	-0.312634037929091	0.0671054408000443	0.276311786016625
Merged-chr5-115059143-4	chr5	115059039	115059239	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029012, intron 1 of 10)	intron (NM_029012, intron 1 of 10)	47615.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	6.04124450384871	5.50354128335166	5.33699624654573	6.02988475258392	5.81911597837155	6.15468077955236	5.77042257180016	6.05783848483065	0.284389525958605	0.339337906812457	0.648698442472301
Merged-chr17-46163152-4	chr17	46163089	46163289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357745, intron 1 of 11)	intron (NM_001357745, intron 1 of 11)	1125.0	NM_001357745	56055.0	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	4.94215819003688	5.14416319994385	5.01816686027934	5.01653520063364	5.43361539262093	5.39429163396741	5.22536855791153	5.5201028279908	0.672758264182024	0.020664524473511	0.130907813056251
Merged-chr2-150608572-4	chr2	150608475	150608675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027977)	promoter-TSS (NM_027977)	-8.0	NM_001356492	71881.0	Mm.26599	NM_027977	ENSMUSG00000033096	Apmap	2310001A20Rik|AI314817	adipocyte plasma membrane associated protein	protein-coding	7.84616109931913	7.72309242675968	7.68649652515659	7.85194008819508	8.05300315655399	8.06217865289287	8.02358574540002	8.14268000672173	0.371785457572835	0.0190118809833394	0.123657221236359
Merged-chr7-117470302-2	chr7	117470199	117470399	+	982.833374	f0_balb.idr|f0_c57.idr	intron (NM_175645, intron 1 of 11)	intron (NM_175645, intron 1 of 11)	89320.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	5.20066412811396	5.06527971547436	5.17212552823306	5.35883794360457	4.8197074588724	4.80212957345326	4.68860709793724	4.82922814596325	-0.841779397169618	0.00824964107400507	0.0685812114572716
Merged-chr15-85859628-4	chr15	85859524	85859724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168672)	promoter-TSS (NM_001168672)	-83.0	NM_001168672	29870.0	Mm.20858	NM_013882	ENSMUSG00000022385	Gtse1	B99|Gtse-1	G two S phase expressed protein 1	protein-coding	7.7647691395526	7.80957355144587	7.38518073989925	7.75589307699048	7.84621746591523	8.01920696623902	7.86129185619264	7.5107270593757	0.167118595826798	0.386523394827841	0.687653995862204
Merged-chr4-138435228-1	chr4	138435128	138435328	+	553.0	f0_balb.idr	intron (NM_026689, intron 1 of 3)	intron (NM_026689, intron 1 of 3)	556.0	NM_026689	68350.0	Mm.103413	NM_026689	ENSMUSG00000041241	Mul1	0610009K11Rik|AV000801|Gide	mitochondrial ubiquitin ligase activator of NFKB 1	protein-coding	3.43985174999869	2.93829278422086	3.01777568731797	3.1948380597374	3.58797584264534	3.38910485633068	3.37390589064571	3.38580448675966	0.997583179814224	0.074763655921076	0.294884929316375
Merged-chr11-115162463-2	chr11	115162363	115162563	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012030)	promoter-TSS (NM_012030)	-878.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	3.04164237269101	3.13823385591186	3.04201596006469	2.91295999353276	3.19635114240336	3.15195535041054	3.25213348919384	2.77058535697175	0.309906931202199	0.603322920040475	0.828026186791373
Merged-chr10-93791264-3	chr10	93791174	93791374	+	696.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	-40281.0	NM_001206851	327799.0	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	2.41362761253365	2.35820027874074	2.41383142276079	2.05591401602693	3.20205642292002	2.85442722010363	3.09894545391856	3.67970152890945	7.19519400441604	4.2158170608257e-12	4.0771418827787e-10
Merged-chr3-88772622-4	chr3	88772525	88772725	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018804)	promoter-TSS (NM_018804)	-26.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	5.72013814392941	6.11497442222553	4.49780842349199	4.84064350015888	5.62243117041932	5.53403145190407	5.38829407873899	5.25962745653325	-0.0100606313122789	0.988296147633683	0.995417633686448
Merged-chr2-37430837-4	chr2	37430742	37430942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146253)	promoter-TSS (NM_146253)	77.0	NM_146253	241322.0	Mm.330182	NM_146253	ENSMUSG00000066798	Zbtb6	A830092L04Rik|ZID|Zfp482	zinc finger and BTB domain containing 6	protein-coding	6.64857731299413	6.26183901154993	6.16757022437572	6.58672539036567	6.86217345084971	6.46926236135278	6.72866590578795	6.45312981285596	0.302837836899017	0.204501510731254	0.507782437802491
Merged-chr8-3621418-4	chr8	3621314	3621514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026156)	promoter-TSS (NM_026156)	-118.0	NM_026156	67439.0	Mm.23739	NM_026156	ENSMUSG00000019470	Xab2	0610041O14Rik|AV025587	XPA binding protein 2	protein-coding	8.83723185469086	8.8946823734765	8.53353883379483	8.64537859795705	8.92946639069798	8.86898792061438	8.54736326168346	8.5280585418632	-0.00100190642172609	0.995446386281107	0.998334470328048
Merged-chr19-5725306-4	chr19	5725227	5725427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114595, intron 1 of 17)	intron (NM_001114595, intron 1 of 17)	990.0	NM_001114595	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	4.71988148905918	4.39661078860239	5.31510176199121	4.61952717682126	5.0046038475277	5.12572582879379	4.92677060841408	5.38780774834949	0.630642197742292	0.0947252946428563	0.336772146565414
Merged-chr5-38561750-4	chr5	38561639	38561839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011715)	promoter-TSS (NM_011715)	-144.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	8.7647088733915	9.03523608638203	8.78277936104015	8.73199652601619	9.00773850428547	9.04885730106576	9.02366098951659	8.82204120560081	0.181000303887668	0.237677129423887	0.547836940728215
Merged-chr3-27081511-5	chr3	27081429	27081629	+	962.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4A|LINE|L1	72325.0	NM_007900	13605.0	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536	ect2 oncogene	protein-coding	4.41261725228066	3.97586326847684	4.23295599817253	4.76387400938112	4.40069042250343	4.58490299218271	4.54957029656567	4.18122084155404	0.0891713498311393	0.837299600340328	0.938228460259819
Merged-chr2-72984385-4	chr2	72984286	72984486	+	965.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045269, intron 1 of 2)	intron (NR_045269, intron 1 of 2)	-3940.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	4.89002756918601	4.82806502793839	5.20537926140001	5.19908329931684	4.67327203717458	4.83351986972442	4.67682348088748	4.81410275998104	-0.616477186778155	0.065690821402755	0.272885103708415
Merged-chr7-16049676-4	chr7	16049528	16049728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22217.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	6.0570753106718	6.51262738482367	6.63376217782655	6.07915494243074	5.07267879906921	5.29626391751179	5.16110765195745	5.32922766350014	-1.87913879922682	1.58703431090587e-10	1.17547882638885e-08
Merged-chr6-85325284-4	chr6	85325193	85325393	+	854.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178639, intron 1 of 13)	intron (NM_178639, intron 1 of 13)	8129.0	NM_178639	94282.0	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding	4.45032002293388	4.07681324740693	4.06515729722604	3.99417585803208	4.29344004670694	4.37805107327307	4.09688949971261	4.20499789752085	0.255523560886147	0.533954215924762	0.789042708189764
Merged-chr6-119444327-4	chr6	119444230	119444430	+	961.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 3 of 4)	intron (NM_009525, intron 3 of 4)	5056.0	NM_001271757	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	5.17729745129779	5.18341055870224	4.85749487298011	5.52823711161144	5.01737896938573	5.0723201279912	5.38232446664572	5.29569069154288	-0.0640812989486049	0.847148129362317	0.9422142432572
Merged-chr13-24613626-2	chr13	24613526	24613726	+	681.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286101)	promoter-TSS (NM_001286101)	-980.0	NM_001286101	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	3.7187549185518	3.6574504541092	3.6173068109373	3.42602039785132	3.62654841193392	3.56261497321727	3.79667049951556	3.44570782013261	0.0523075758402609	0.914720615467146	0.968219651553043
Merged-chr16-21477310-3	chr16	21477202	21477402	+	996.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 17 of 46)	intron (NM_001081366, intron 17 of 46)	54184.0	NM_001285894	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	4.43312488797287	4.47929493652288	4.78919447891769	4.81335967288202	3.88397305691067	4.12489905838198	4.23927518391997	4.0525778061235	-1.41271764084134	0.000567970522333382	0.00855248017964201
Merged-chr12-33050553-4	chr12	33050458	33050658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024478, intron 11 of 19)	LTR53B|LTR|ERVL	42317.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	5.31359546781715	6.00023372502884	5.17996444942219	5.03509969415723	5.94209348265475	5.66838559620236	5.40902805419679	5.31081841243989	0.300196236546937	0.398928576991809	0.697006239271951
Merged-chr1-172500718-12	chr1	172500558	172500758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178598, intron 1 of 4)	CpG	412.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	5.10462285030152	5.4460389383233	5.6196573193753	5.37078134502971	5.65868322575085	5.66257879611723	5.43350275882769	5.48488176946408	0.295538583758883	0.296150149109539	0.608096681478952
Merged-chr10-67226165-4	chr10	67226066	67226266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001242396, exon 9 of 25)	exon (NM_001242396, exon 9 of 25)	40416.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	6.50890251067188	6.71221911144704	6.73299485968049	7.04311976191777	6.72433257655184	6.54092949869864	6.94811009056787	6.68367308882912	-0.0661215573593166	0.770202472414536	0.910083821330452
Merged-chr7-136381035-4	chr7	136380923	136381123	+	853.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31608.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	3.33428316884477	3.79103762707755	3.99441280169356	3.95658043419069	4.29651516508252	4.06926230846095	3.87993244029918	4.16802742820495	0.847217508301555	0.0887939675311985	0.325166734316159
Merged-chr10-16637199-4	chr10	16637104	16637304	+	954.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	458578.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	4.83857385765029	4.5209262432614	4.55146260109763	4.82381350231609	5.08889817419737	4.85923465631705	5.10839615016596	5.10098461164783	0.688268917940246	0.0386645449342119	0.197334107699754
Merged-chr7-126695349-4	chr7	126695255	126695455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175103)	promoter-TSS (NM_175103)	428.0	NM_029420	75764.0	Mm.280573	NM_029420	ENSMUSG00000059772	Slx1b	1110030E23Rik|2410170E21Rik|4833422P03Rik|AI853643|Giyd1|Giyd2	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	protein-coding	5.88622248774073	5.43813879569903	5.30923146076563	5.5106821299122	5.58395168964582	5.77941907955622	5.70119932988221	5.70218090160015	0.235009508059081	0.396654983702848	0.695320898534295
Merged-chr13-45971302-4	chr13	45971206	45971406	+	960.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6315.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	4.72671705153818	4.58322670341549	4.35594998723042	4.70678418661761	4.81822447060551	4.27662140770067	4.59379828168087	4.68807435766231	0.0256576942765384	0.94538305804579	0.980467139069841
Merged-chr14-49172094-4	chr14	49171968	49172168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027492)	promoter-TSS (NM_027492)	-178.0	NM_027492	70646.0	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding	7.94632580526541	7.98532275798122	7.7106837388664	8.03647083528989	7.90984828899044	7.76467279692124	8.11983393503713	7.87068946860203	-0.0100880458475788	0.953881012119491	0.983588075847329
Merged-chr3-116211002-3	chr3	116210906	116211106	+	586.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42478.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	3.80114941158018	3.56096020659172	3.44871393821466	3.46139394804587	3.42942142623592	3.37516525659553	3.37728180445282	3.75462089031236	-0.252238940893885	0.623362616165558	0.838941930944268
Merged-chr8-67494818-4	chr8	67494722	67494922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168577)	promoter-TSS (NM_001168577)	-53.0	NM_001168577	17961.0	Mm.4695	NM_010874	ENSMUSG00000051147	Nat2	AV377607	N-acetyltransferase 2 (arylamine N-acetyltransferase)	protein-coding	7.39856486532201	6.92326209683607	6.86653816203712	7.46590477039115	7.34690754965878	6.97061190810037	7.35362136257133	7.16768637974087	0.0290267072597551	0.898331952032645	0.962132593233898
Merged-chr13-93251954-4	chr13	93251847	93252047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51810.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	6.41771745788851	6.17633703696593	6.67795505894528	6.84820049431352	5.86786770420698	5.95105180931504	6.26199174532177	6.25186003531079	-0.716224294643082	0.00629162725117411	0.0561685358223156
Merged-chr3-81039912-4	chr3	81039823	81040023	+	973.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	3507.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	5.25323708352163	5.22539646222363	5.73902188352156	5.5220195060685	5.30568939943695	4.90704612176191	4.99116010929116	5.31127080055756	-0.549965526065089	0.0843488902579077	0.315976509639893
Merged-chr10-127381144-4	chr10	127381072	127381272	+	935.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359244, intron 1 of 25)	intron (NM_001359244, intron 1 of 25)	504.0	NM_001359244	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	4.89899523182469	4.61826741745663	4.49662007912315	4.50330466355125	4.70545686600556	4.53747879974389	4.51838950677191	4.53616987889964	-0.101989413747274	0.777581639406651	0.913262978014698
Merged-chr7-127111685-4	chr7	127111588	127111788	+	768.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133686, intron 1 of 3)	B1F|SINE|Alu	10341.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	4.40302703032059	3.90912258400699	3.86877757876478	4.00743204443918	3.87478903022261	4.2904190174234	4.22947454283819	3.86663646890462	0.0366110553336817	0.935319057539864	0.976553886506881
Merged-chr2-157838901-3	chr2	157838799	157838999	+	754.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025680, intron 11 of 15)	intron (NM_025680, intron 11 of 15)	-75754.0	NM_198627	277432.0	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	3.05322421927673	3.0665226088687	3.38755363083244	3.16444007336651	2.94200534361583	3.16288307859945	3.10471684023302	3.38551924629664	-0.0755785528852395	0.896094103540385	0.960994089571403
Merged-chr1-92974788-4	chr1	92974724	92974924	+	872.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271766)	promoter-TSS (NM_001271766)	-523.0	NM_001271766	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	4.01645871365002	3.93790684135023	4.10757993678803	3.81427448861638	4.25991541896765	3.93482606634888	3.99966690003463	3.69785903128852	0.098464817400561	0.827083328299263	0.933672322391225
Merged-chr12-70156282-3	chr12	70156213	70156413	+	840.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195033, intron 1 of 12)	intron (NM_001195033, intron 1 of 12)	2142.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	3.60077327536075	3.82869226675513	4.12076485427143	3.68677674481908	3.62813397228172	3.83262169262489	3.33598285746709	3.90808574139761	-0.379039223278115	0.457431692360244	0.740518865276849
Merged-chr15-100228344-4	chr15	100228261	100228461	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007497, intron 1 of 6)	CpG	502.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	4.71200031707697	5.20796454463072	5.23337928542091	4.98790291444108	4.98278627664901	5.2223503221245	4.69122745828397	4.94367607595475	-0.152281166993025	0.653207976731756	0.854997557892684
Merged-chr4-141139786-4	chr4	141139650	141139850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025608)	promoter-TSS (NM_001025608)	46.0	NR_102344	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	7.15920664450225	7.16626899591555	6.81271555353258	6.59403201412219	7.35577119539298	7.48520315999174	7.043425656948	7.19960350869273	0.462847544790949	0.0395561808935899	0.2002823587868
Merged-chr16-58454652-1	chr16	58454552	58454752	+	591.0	f0_balb.idr	intron (NM_001356484, intron 9 of 15)	intron (NM_001356484, intron 9 of 15)	46117.0	NM_028523	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	3.19334731152044	3.18147617933502	3.30618892469975	3.03193482620167	2.99171998560531	3.18165936038032	3.44252903450417	3.13210694827021	0.0740801289030506	0.895934378213779	0.960981798147686
Merged-chr16-32595383-4	chr16	32595279	32595479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13517.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	6.26775763117942	6.56207902828553	6.20914909070988	6.43956809992796	6.50799070958924	6.52024576706274	6.29355693116062	6.37589483594068	0.0658609558710458	0.767587476219706	0.909027746453384
Merged-chr7-75709450-4	chr7	75709353	75709553	+	778.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 17 of 36)	intron (NM_029332, intron 17 of 36)	-138885.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	4.2109492533008	4.17540437700753	4.16014694733194	5.05008520360812	4.36125336798007	4.48475415166532	4.24267521459425	4.80364117494927	0.0144016152810499	0.97562187646404	0.991347073148764
Merged-chr16-13863642-4	chr16	13863517	13863717	+	772.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039533, intron 8 of 22)	intron (NM_001039533, intron 8 of 22)	39528.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	4.28919421371089	3.70833745284391	4.33140383614228	4.29270325420799	4.13284384893088	4.18384042524049	4.22783746878898	4.32860461825108	0.0894262383741431	0.835879137950559	0.937525731479361
Merged-chr6-82971275-4	chr6	82971184	82971384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 3 of 9)	intron (NM_033079, intron 3 of 9)	24362.0	NM_033079	110958.0	Mm.100652	NM_033079	ENSMUSG00000030041	M1ap	D6Mm5e	meiosis 1 associated protein	protein-coding	5.38680991233551	5.94805607460645	5.9726902507299	5.95696493123647	5.68417958377166	5.59793988736616	5.48324446480909	5.72209610595495	-0.363622637661364	0.191036538907998	0.49038154289489
Merged-chr10-40025316-4	chr10	40025226	40025426	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144821)	promoter-TSS (NM_144821)	-58.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	5.39158105966733	5.39176899884767	4.94199716991701	5.37761063345776	5.21651953909128	5.00093649474368	5.22336586848964	5.11825412172091	-0.276929944416641	0.366357210946327	0.670823963109321
Merged-chr14-75016641-4	chr14	75016529	75016729	+	861.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198642, intron 1 of 13)	intron (NM_198642, intron 1 of 13)	602.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	4.53680312263584	4.45003362812107	4.49627566940917	4.34718187741635	4.45355174480352	4.44578667465052	4.73712313914938	4.75702353919215	0.343595287836774	0.342524743476205	0.65153844777907
Merged-chr11-41632653-1	chr11	41632553	41632753	+	543.0	f1_balb.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	368061.0	NM_177408	14406.0	Mm.5309	NM_008073	ENSMUSG00000020436	Gabrg2	GABAA-R|Gabrg-2|gamma2	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	protein-coding	3.22338589161917	2.80865637739104	3.50384913396751	3.2002184291889	3.27862371430622	3.27402138394816	3.32975763184148	3.81134457146051	0.832755519200636	0.178274560797473	0.474069001494502
Merged-chr11-6695432-4	chr11	6695328	6695528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	24609.0	NR_046025	626419.0	Mm.390334	NR_046025	ENSMUSG00000086808	Gm11981	-	predicted gene 11981	ncRNA	5.53643631156375	5.56968877690986	5.61562996512876	5.48576040880354	5.35947481372638	5.4127834711801	5.70653402403811	5.47854673233022	-0.0966510176885298	0.722410386149201	0.889150263279452
Merged-chr1-62679157-3	chr1	62679053	62679253	+	972.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24164.0	NM_001077406	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	3.31006962344507	3.54504985130945	3.36703579781411	3.65522908010082	3.17349287230815	3.016574011852	3.50785606753566	3.12316715414152	-0.964152646875262	0.0937625823288683	0.334969225435983
Merged-chr13-37515134-2	chr13	37515035	37515235	+	902.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57C2|LTR|ERV1	169790.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.53237197853331	3.18761797225521	3.41502799491429	3.54505469016376	3.57212448108033	3.46809641145775	4.15925418184854	3.63885119531919	0.951171467237652	0.0759274829392429	0.297732608425097
Merged-chr8-111233958-4	chr8	111233866	111234066	+	947.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	25236.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	4.56084227295113	4.4116107963653	4.60548328563541	5.0029757751661	4.95417812373262	5.08342191327392	4.58450641948205	5.18215529009731	0.571626246836139	0.133463613647221	0.406803123166862
Merged-chr5-64381770-4	chr5	64381664	64381864	+	933.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86178.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	4.58286125816799	4.12593342238177	4.20824536087532	4.24048909594652	4.45944599030903	4.47478986342998	4.14145221856525	4.54398276473651	0.28431374290619	0.472135492622509	0.750388126144414
Merged-chr11-75625478-3	chr11	75625390	75625590	+	649.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008850, exon 11 of 12)	exon (NM_008850, exon 11 of 12)	-5530.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	3.3113532551589	3.90826811647796	3.48379970465384	3.60441602161011	3.03490150564902	3.29602811952657	3.29991599449063	3.42705628836555	-1.17617687123675	0.0377569926134578	0.194282149731317
Merged-chr6-72261472-4	chr6	72261374	72261574	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25897.0	NM_153778	71093.0	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	4.72086509273854	5.19878056714953	4.87792489667482	4.5983956326416	5.15165457427774	4.85750908584644	4.99271559887926	5.07802863851279	0.338753442372256	0.323334533320845	0.634781243028586
Merged-chr1-55026863-1	chr1	55026763	55026963	+	1000.0	f1_c57bl6.idr	intron (NM_031179, intron 1 of 24)	intron (NM_031179, intron 1 of 24)	615.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	4.28409576485042	4.81880253310048	4.51505370199706	4.16692207430171	4.63090904926952	4.98413908210395	4.49427358898651	4.59385837591206	0.491133866812979	0.215104926127524	0.521064304956133
Merged-chr11-107025803-4	chr11	107025689	107025889	+	839.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2434.0	NM_001163473	69066.0	Mm.40679	NM_001163473	ENSMUSG00000078607	1810010H24Rik	-	RIKEN cDNA 1810010H24 gene	protein-coding	3.61535868055393	3.43639159194912	3.86679687536268	3.5981224767428	3.72793291951511	3.84137807556777	3.54589567150354	3.81807845603905	0.317788555587944	0.505514484365918	0.771488881809541
Merged-chr5-92308890-3	chr5	92308824	92309024	+	727.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172713, intron 1 of 21)	B3|SINE|B2	1100.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	3.35692197811398	3.61167057142791	3.46478540981897	3.66711973396574	3.01213400170137	3.00244972720896	2.96232265015921	3.51313046929914	-1.47909240874318	0.0153988104310018	0.106850451127732
Merged-chr10-127076291-4	chr10	127076185	127076385	+	656.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2622.0	NM_001301014	216439.0	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	3.35903637349085	3.35112734381629	3.41915242697563	3.20391006609143	3.83124698779695	3.53464482545813	3.71216488439455	3.47436167919276	1.09342651789294	0.0280247317671747	0.160178251490659
Merged-chr3-65922642-4	chr3	65922528	65922728	+	744.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35621.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	3.94510430393091	4.42824984831177	4.2048864881711	3.91917771407229	4.26882792141344	4.46803604250508	4.54852008790644	4.33614125500604	0.66638129407979	0.104386600450794	0.355270815410111
Merged-chr14-70963723-3	chr14	70963625	70963825	+	570.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	73618.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	3.27431251774831	3.39262874078716	3.34019387445697	3.62118699106909	3.64027841522959	4.02549473959278	3.61158604515357	3.46058259183173	0.855131771149163	0.106765438987881	0.360348218742401
Merged-chr15-51990621-1	chr15	51990521	51990721	+	583.0	f0_balb.idr	intron (NM_009009, intron 1 of 13)	intron (NM_009009, intron 1 of 13)	1139.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	3.51915728898519	3.24094583936253	3.56815321034483	3.36162669885696	3.16625591184541	3.22808279028143	3.03899147651115	3.51755070243315	-0.639962738446212	0.253028694465478	0.564286412988635
Merged-chr1-37735031-4	chr1	37734939	37735139	+	908.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15228.0	NM_028096	72097.0	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	4.65414518363519	4.82055553315358	4.34665724426697	4.71088738269498	4.47852464811357	4.78829367612003	4.74451548344738	4.76412504710732	0.0835806016341726	0.816246383687419	0.929287083544371
Merged-chr11-79223610-4	chr11	79223507	79223707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19417.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	7.21045516219359	7.38090057109914	6.87520378861535	6.80840627915728	7.46948829273804	7.26238759785892	7.15358722537716	7.17343964211201	0.262931194529947	0.226944047932291	0.535604327821614
Merged-chr2-10005398-4	chr2	10005286	10005486	+	918.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027748, intron 2 of 6)	intron (NM_027748, intron 2 of 6)	43223.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	4.66013186155732	4.63295238948277	4.53425144281729	5.0172425938008	4.86256221232293	4.62064290697568	4.75352774155392	4.87844817926745	0.0811322586294393	0.82094271523362	0.931443689364036
Merged-chr5-130089365-4	chr5	130089252	130089452	+	862.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130476, intron 1 of 5)	intron (NM_001130476, intron 1 of 5)	9982.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	4.67634296887488	4.50357375079403	4.60324909115391	4.463019283934	4.42102420355481	4.48067547632692	4.42128660479424	4.48083555720827	-0.240244812500175	0.503770352598489	0.770586107991984
Merged-chr5-137305942-4	chr5	137305847	137306047	+	867.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359602, intron 2 of 19)	intron (NM_001359602, intron 2 of 19)	1727.0	NM_031405	83701.0	Mm.387734	NM_031405	ENSMUSG00000037364	Srrt	2810019G02Rik|ASR2A|ASR2B|ASR2C|ASR2D|Ars2|Asr2	serrate RNA effector molecule homolog (Arabidopsis)	protein-coding	4.43304617202742	4.20588575058943	4.08283489845486	4.16231363465531	4.53555220592312	4.3976637331669	4.11470774406428	3.86209113951228	0.096246381544185	0.823521679285818	0.932313798231142
Merged-chr3-21962486-4	chr3	21962371	21962571	+	879.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114181.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.21343273739685	4.43535354472606	4.06578514134631	4.03795323129115	4.51437763696511	4.13683901214481	4.48374293964871	4.34432987116606	0.470029315661719	0.241607634940968	0.552100865114873
Merged-chr15-73090793-4	chr15	73090697	73090897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053068, intron 1 of 2)	CpG	385.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	8.88150140131862	8.97617577950845	8.92067900748533	8.94516107882616	8.83027169398598	8.98555980956565	9.07631976855981	8.77349813838518	-0.0147670303372774	0.920032051129861	0.970406583631903
Merged-chr6-108736366-4	chr6	108736257	108736457	+	898.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46702.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	4.32762541012918	3.98890134059193	4.36830879989975	4.47924169131822	4.15469345939133	3.9609762136374	4.18159730727966	4.00400056775262	-0.578997705834885	0.168654678917538	0.460920383592684
Merged-chr3-88292176-4	chr3	88292079	88292279	+	840.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357024, intron 2 of 3)	B2_Mm2|SINE|B2	4659.0	NM_029801	76927.0	Mm.273330	NM_029801	ENSMUSG00000010538	Tsacc	1700021C14Rik|SIP	TSSK6 activating co-chaperone	protein-coding	4.21490605137617	4.23142656365656	3.90664963076871	3.57894107167636	4.51418364767189	4.38972458977923	4.48026392228299	4.34354557365044	1.10259256697175	0.0111809483368328	0.0854006569017518
Merged-chr7-35056609-4	chr7	35056511	35056711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009884)	promoter-TSS (NM_009884)	-45.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	8.28456515453214	8.22053228864945	8.04959913540329	8.0823095421104	8.11850729545111	8.28586651993216	8.29027101008869	7.89573195237236	-0.00554310220097576	0.97413764425101	0.99078552477234
Merged-chr6-136690246-4	chr6	136690179	136690379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28386.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	7.81449984974788	7.73009247626862	7.8309379734301	7.75155504453164	7.83766544313354	7.90650882752248	7.92788876824156	7.77971245769457	0.10868897068184	0.494672105065667	0.765224301099017
Merged-chr10-110805243-3	chr10	110805138	110805338	+	957.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045979, intron 2 of 2)	intron (NR_045979, intron 2 of 2)	59799.0	NM_178609	52679.0	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e|E2F-7	E2F transcription factor 7	protein-coding	4.33117041702659	4.14194770011133	4.51878496393433	4.75613234097796	3.53293873498409	3.56880240096187	3.88996240842277	4.20206605614681	-1.71145292414875	0.000618109595177998	0.00915257392868207
Merged-chr1-143988924-4	chr1	143988801	143989001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	15248.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	6.03482239168097	5.66657921433799	6.26589307797925	6.67976301948926	5.72604762704962	5.67533825980244	5.80108946045612	5.9888076155502	-0.675766141727328	0.0259687778640017	0.15235418876153
Merged-chr3-127626236-3	chr3	127626133	127626333	+	756.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	-6903.0	NM_009718	11924.0	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	3.37795973288355	3.56241945281558	3.37845511927868	3.27736262893147	2.97277000756625	3.0651676685773	2.94748119800018	3.08952683152112	-1.55791543989018	0.00811082061792765	0.0678576372934888
Merged-chr4-46611420-3	chr4	46611308	46611508	+	940.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198664, intron 9 of 12)	intron (NM_198664, intron 9 of 12)	-9479.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	4.03576778263047	3.82856937617174	3.80575923092204	3.82068027168552	3.77825303156899	3.81864266508307	3.63070334632991	3.69836604100321	-0.404311621749212	0.371929104900986	0.675931720312192
Merged-chr3-19305642-3	chr3	19305551	19305751	+	812.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122759, intron 1 of 12)	intron (NM_001122759, intron 1 of 12)	5671.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	3.44175482579681	3.56763161634428	3.61061949535775	3.64142261795115	3.92080914074607	3.55625046909151	3.43005974943884	3.60860674540658	0.254925769836953	0.6091937605659	0.83089280248568
Merged-chr1-62721551-4	chr1	62721453	62721653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	18236.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	6.21665984774283	6.06686970493729	5.57642526660295	6.18194776616765	6.06936255151863	5.81304651073456	5.88457032830819	5.79085127571597	-0.224610854134345	0.402580583819561	0.70007044306881
Merged-chr2-121956432-4	chr2	121956333	121956533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008545)	promoter-TSS (NM_008545)	-341.0	NM_008545	17147.0	Mm.389349	NM_008545	ENSMUSG00000074881	Mageb3	Mage-b3|Mage-ps1|Mage-rs3|Smage3	melanoma antigen, family B, 3	protein-coding	6.67498189724572	6.5708168910127	6.16577298597065	6.36922062265667	6.8716022358335	6.75956140021822	6.70040180170623	7.08808662844178	0.58597815669063	0.00884287646301908	0.0721985666163381
Merged-chr16-59560120-4	chr16	59560041	59560241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4389.0	NM_174848	224273.0	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	5.67807409229971	5.46298111312655	5.65198377652135	5.9030741051261	6.0902166557081	5.88213847944796	6.14924450113277	6.02387323606245	0.547834308808974	0.0351204880138839	0.18566450513739
Merged-chr8-68247159-1	chr8	68247059	68247259	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-29369.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	3.95981837213749	4.18109136753067	3.9047813657995	3.33909152482707	4.8071467820067	4.62504725942174	4.14335292581986	4.01139969491384	1.40738992442372	0.0049708258819577	0.0473525716611172
Merged-chr12-35889533-4	chr12	35889447	35889647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36074.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	7.41658565830092	7.51080636996904	7.43723131552687	7.81970501354103	7.25976923778637	7.48289237752418	7.24770496703212	7.30048627456579	-0.330414989919167	0.0856415464181514	0.318707445413073
Merged-chr1-132312303-3	chr1	132312201	132312401	+	901.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3824.0	NM_001195025	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	3.49226101075113	3.45364581641052	3.64122616804579	3.4274603857365	3.30666698743599	3.24013742737544	3.3699281154996	3.54239625375857	-0.464526465325149	0.367731759632993	0.672263639960449
Merged-chr8-85142741-4	chr8	85142646	85142846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9178.0	NM_001037922	624855.0	Mm.390061	NM_001037922	ENSMUSG00000062687	Cks1brt	EG624855|Gm6531	CDC28 protein kinase 1b, retrogene	protein-coding	7.51464010336647	7.48019237095776	7.64209354700714	7.68307098909215	7.78854266745155	7.73991097798595	7.93342050704839	7.86352565842571	0.32053693725697	0.0562537746769582	0.24839252033072
Merged-chr1-152582101-4	chr1	152582026	152582226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	43091.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.75419549219824	5.05073247902603	5.22886884959064	5.64258738489939	5.39457220782062	5.19598293605696	5.38403355290288	5.25749144169515	-0.2563598263758	0.418507284384004	0.711949966908158
Merged-chr8-70839795-4	chr8	70839745	70839945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027560)	promoter-TSS (NM_027560)	-125.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	8.92414754923061	9.03873547104245	9.20119159520628	8.69115952637517	8.9911374710406	9.31452971004876	9.01743395345633	9.00712143862393	0.143473508473807	0.405786201872343	0.702456276834042
Merged-chr18-12102316-4	chr18	12102223	12102423	+	889.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178801, intron 4 of 14)	intron (NM_178801, intron 4 of 14)	19214.0	NR_110356	338363.0	Mm.271567	NM_178801	ENSMUSG00000049411	Tmem241	6030446N20Rik	transmembrane protein 241	protein-coding	4.70186531442669	4.61932718223994	4.70264603036699	4.39834683039455	4.30200527320262	4.55198340241252	4.30943584152516	4.8031116021393	-0.219151295548055	0.566019556045517	0.807783748011785
Merged-chr11-101732894-4	chr11	101732794	101732994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144831)	promoter-TSS (NM_144831)	-62.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	7.5396917385214	7.7121053602217	7.6614912883551	7.30361216814173	7.65891530085438	7.74494959530728	7.24444557194685	7.51758559449644	0.000957097156386242	0.996178141273603	0.998563054228531
Merged-chr12-3874347-4	chr12	3874244	3874444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 6 of 22)	intron (NM_007872, intron 6 of 22)	-12100.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	5.27310476557048	5.36688103790077	5.45152421595168	5.53029991419246	5.5084183128621	5.28257996610374	5.64921423869152	5.06446296105342	-0.0276583405706548	0.926095328968637	0.972795068337101
Merged-chr13-32338739-4	chr13	32338629	32338829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146041)	promoter-TSS (NM_146041)	-185.0	NM_146041	218138.0	Mm.247143	NM_146041	ENSMUSG00000038372	Gmds	BC031788|C87208	GDP-mannose 4, 6-dehydratase	protein-coding	8.9957085833965	9.14803152454243	9.25768937101357	9.13731842442134	9.07581903348676	9.25545942328041	9.39722234302449	9.15098711509749	0.105835184301801	0.481501586753681	0.756657499581416
Merged-chr9-109100840-4	chr9	109100738	109100938	+	900.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172775, exon 3 of 38)	exon (NM_172775, exon 3 of 38)	5402.0	NM_172775	235611.0	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	4.62009552356541	4.47699453985471	4.65545480008952	4.28009015323649	4.29293766829536	4.12508055462582	4.0921777286399	4.25471228857544	-0.732835202567003	0.0668272463564658	0.275679699045177
Merged-chr17-29268890-4	chr17	29268802	29269002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030561, exon 1 of 9)	5' UTR (NM_030561, exon 1 of 9)	114.0	NM_030561	80748.0	Mm.290116	NM_030561	ENSMUSG00000052712	BC004004	2400006G15Rik	cDNA sequence BC004004	protein-coding	7.60462237035654	7.86918217561393	7.34024102542419	7.35338618434535	7.63951559284449	7.7037074916031	7.22773795391062	7.47495009134475	-0.0418797205082131	0.842183200087329	0.940110307562683
Merged-chr7-144991974-4	chr7	144991866	144992066	+	934.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-52041.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	4.34657936193933	4.74175173260476	4.29636858749702	4.53158582507674	5.04946445296068	5.01070434994699	4.71111533712527	4.65417509190976	0.790719520696029	0.0303609100003623	0.168569361381887
Merged-chr5-86086924-4	chr5	86086795	86086995	+	857.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310639, intron 4 of 7)	intron (NM_001310639, intron 4 of 7)	15149.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	3.5941744464242	3.55986097716018	3.59465659854462	3.47668714195793	4.01880651080883	3.5322756660931	3.63413939795982	3.79639901198804	0.673203809888971	0.160538816039851	0.448715636020597
Merged-chr5-43662683-4	chr5	43662537	43662737	+	690.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359906, intron 1 of 37)	intron (NM_001359906, intron 1 of 37)	258.0	NM_001359903	231214.0	Mm.44434	NM_172274	ENSMUSG00000039765	Cc2d2a	5730509K17Rik|b2b1035Clo	coiled-coil and C2 domain containing 2A	protein-coding	3.2071738205665	2.93726221605569	2.88208860413052	3.12867123847862	2.51000587833278	2.85936724997453	2.67476850888889	2.68113403865174	-1.83534658215903	0.00840575794774638	0.0694985997168823
Merged-chr18-54978842-4	chr18	54978739	54978939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	11341.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	6.36627913283273	5.93515789236355	5.55963547047586	6.13337138685628	5.83584053165676	5.82690772298058	6.06773005016166	6.15309249266215	-0.0947884350500602	0.732727666294462	0.89414909494717
Merged-chr11-104441738-4	chr11	104441615	104441815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 2 of 14)	GA-rich|Low_complexity|Low_complexity	576.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	5.6898834196074	5.69892433209364	5.63930432394845	5.37724702861874	5.76655394421068	5.86538706061411	5.75864868090785	5.76039737012237	0.327861564414087	0.209545237847849	0.514046766302012
Merged-chr11-54733675-1	chr11	54733575	54733775	+	682.5	f0_balb.idr	intron (NM_178626, intron 3 of 5)	ORR1F|LTR|ERVL-MaLR	54028.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	3.2606953713422	3.18506818160849	3.20699610379163	3.34445498595487	2.99149755304443	2.9296996605619	2.8877845102007	3.20524628883179	-1.00390009830546	0.0872117617513865	0.322106994069217
Merged-chr2-52676318-3	chr2	52676235	52676435	+	742.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285426)	promoter-TSS (NM_001285426)	-192.0	NM_001285426	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	3.80143133267468	3.78499370660095	3.99338894615113	3.51419278710816	3.5334887566444	3.81502774475873	3.73403212814683	4.19493189061588	0.183089207616628	0.711701597786229	0.884600435455677
Merged-chr15-31530233-4	chr15	31530125	31530325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 1 of 25)	intron (NM_172606, intron 1 of 25)	812.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	4.95250255013133	5.1075419816282	5.05835907414982	5.13254994543598	5.13062370719591	5.16349753224269	5.21938736624095	4.87501656372624	0.0629908108361446	0.837067507837609	0.938145671742126
Merged-chr11-101965770-4	chr11	101965666	101965866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024449, intron 1 of 1)	intron (NM_024449, intron 1 of 1)	1249.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	7.23912142032328	7.37655867794968	7.16224627285419	6.8906083771743	7.41730624664479	7.45967141015843	7.25693012757708	7.04909999251967	0.188068186502228	0.365184672162636	0.66989324312268
Merged-chr6-86494033-4	chr6	86493924	86494124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5797.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	7.12375578859223	7.31241602930512	6.64877144088581	6.33732799812521	7.00786501691606	7.09892765797057	6.692400551937	6.67576352096635	-0.0306784344600935	0.910536982859796	0.96669834733672
Merged-chr9-62344598-8	chr9	62344469	62344669	+	910.444641	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	CpG	3226.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	3.80333213540548	3.23346103314617	4.03195418942767	3.56796637244987	3.67393600758108	3.76512266107887	3.57341228644128	4.14839654015111	0.354707678063567	0.511538337346778	0.775482659180767
Merged-chr9-107986575-4	chr9	107986470	107986670	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026597)	promoter-TSS (NM_026597)	-654.0	NM_026597	68176.0	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	4.66956119385495	4.71744172560908	4.41670012234828	4.15425723670144	4.9280378045049	4.9163143257352	4.75731697153107	4.413968594139	0.602339075501967	0.119588656394208	0.382663920105268
Merged-chr1-134098378-5	chr1	134098305	134098505	+	869.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12837.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	4.0673865916652	3.72355071156976	4.11428823448312	4.25540171789842	3.87094679874754	3.74352040622899	4.18285776498539	4.43062108068127	0.0565382043586416	0.904955115142935	0.964695555007872
Merged-chr15-25341870-3	chr15	25341770	25341970	+	828.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71894.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	3.52605431000299	3.2976781103414	3.37028045968591	3.4161169139428	3.24276168782156	3.23767067790714	3.11758086180088	3.52445700938188	-0.417906638238259	0.436848991473669	0.725337058576227
Merged-chr9-7184533-4	chr9	7184448	7184648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357483)	promoter-TSS (NM_001357483)	43.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	7.3729561809244	7.81498782707614	7.73425537439465	7.44700170629972	8.0164002802559	7.95889938208285	8.0190178762679	7.58463343645474	0.400781290912076	0.041384586861072	0.205999771597406
Merged-chr18-50096762-4	chr18	50096641	50096841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31460.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	7.28322289434076	7.14271613751723	7.88287856291007	7.87139974123783	7.29902089671411	7.11178751647369	7.61476997916952	7.6223147867984	-0.218691249306494	0.368370479235305	0.67281911392627
Merged-chr11-87031046-4	chr11	87030962	87031162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37300.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	7.50417048108033	7.16107161678105	6.91606221730961	7.33112694665848	7.1859136789439	6.88679847440081	6.92128733992527	7.00344281095378	-0.325413139609573	0.123229538760505	0.389185665057583
Merged-chr7-19332977-4	chr7	19332881	19333081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12090.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	7.95577795007847	8.01466305760641	7.88436705741569	7.9889646552045	7.90953105890665	8.17639066055998	8.45011175045197	8.01376055878466	0.239942928527512	0.184117470897306	0.481387652843055
Merged-chr5-76675550-4	chr5	76675453	76675653	+	982.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83839.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	4.69113933879189	5.37607513589526	5.16859208318376	4.69154649797558	5.28364886421216	4.95636577262137	5.28618304079814	4.89324291083244	0.218169096711372	0.54404451883781	0.795027379566929
Merged-chr7-45154398-4	chr7	45154262	45154462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278207)	promoter-TSS (NM_001278207)	59.0	NM_001278207	68845.0	Mm.181689	NM_029406	ENSMUSG00000003423	Pih1d1	1110061L23Rik|4933413A04Rik|Nop17	PIH1 domain containing 1	protein-coding	7.13344995052806	7.57399709707165	7.03528438776338	6.9050145297065	7.23286762353687	7.65428620013028	7.3267439567657	7.55997813378687	0.358978803092055	0.109087728746719	0.364679551715532
Merged-chr5-139437694-3	chr5	139437601	139437801	+	870.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	14522.0	NM_029771	76854.0	Mm.389706	NM_029771	ENSMUSG00000053647	Gper1	6330420K13Rik|CMKRL2|Ceprl|FEG-1|GPCR-Br|Gper|Gpr30	G protein-coupled estrogen receptor 1	protein-coding	2.92173176784911	2.82680200975378	3.0385780749974	3.14610874363903	2.76097144104176	2.59718629078708	2.85018437592176	3.1433084941746	-0.616467060149164	0.353633021105387	0.660451095841925
Merged-chr4-12088000-4	chr4	12087912	12088112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177861)	promoter-TSS (NM_177861)	-5.0	NR_110955	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	7.54203987296235	7.73465190395264	7.42593973469502	7.54330370783183	7.9290363687386	8.01100575164481	7.88818132818538	7.85038251423551	0.461012061729499	0.00605761510826848	0.0546552143226571
Merged-chr3-83841114-4	chr3	83840997	83841197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011905, exon 2 of 3)	5' UTR (NM_011905, exon 2 of 3)	511.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	4.51044669687416	5.46664017281331	5.43258645553955	4.84080468235895	4.74925039419354	5.00903588787123	5.06087886278832	5.47810789311563	-0.0400503917214894	0.920093337520307	0.970409558278764
Merged-chr6-140751188-4	chr6	140751084	140751284	+	961.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	124299.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	4.79824834983881	4.59049699574308	5.03937589697365	5.19634510721537	4.94912158478415	4.81473382520683	4.7384342931808	4.71804230468793	-0.259389676633633	0.463509461618149	0.74481081742185
Merged-chr17-47502200-4	chr17	47502098	47502298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022015)	promoter-TSS (NM_022015)	93.0	NM_001356290	63856.0	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	7.25648873134873	7.50879240147873	7.49354576004782	7.08314871894846	7.18633844089627	7.64312364487255	6.87637418039725	7.31589126911861	-0.0811598528162944	0.720281990209391	0.888243884856927
Merged-chr9-47386320-4	chr9	47386220	47386420	+	848.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143850.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	3.91995501965828	4.20091976063562	4.20133704494485	4.07956968020784	4.02988544411237	4.04203714084346	3.95541128433274	3.96948688302627	-0.277909940729707	0.50448207126883	0.770800870451296
Merged-chr7-80166923-4	chr7	80166843	80167043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19898.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	6.2536925897444	6.79002250278542	6.52739862655324	5.76953756493998	6.17679149356925	6.43097427908	6.18420923305007	5.85158550622102	-0.30954034538754	0.303476983275029	0.616088188202829
Merged-chr13-113359075-4	chr13	113358991	113359191	+	991.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	143753.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	5.10234860949264	4.53231295638977	4.77529922963446	5.08377727844493	5.14230172731951	5.17723537739423	5.36196939491381	5.13140783693003	0.570285314895041	0.0879670664267502	0.323570245526828
Merged-chr7-132226881-4	chr7	132226797	132226997	+	789.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72156.0	NM_018867	55987.0	Mm.471654	NM_018867	ENSMUSG00000030862	Cpxm2	4632435C11Rik|CPX-2|Cpx2	carboxypeptidase X 2 (M14 family)	protein-coding	3.53456397710679	3.30512588818569	3.22169848029882	3.4797914473088	3.92752456103554	3.86113935499497	3.67676692382919	3.53310735290615	1.15042891219868	0.0230349973526669	0.140523782378677
Merged-chr12-109507876-4	chr12	109507759	109507959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33137.0	NR_027652	17263.0	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	5.55224105254085	5.55453487060074	5.73538583094454	5.62313546294049	5.60998058886553	5.80898571282993	5.79908199704459	5.77883962535794	0.212194835850709	0.407293613340001	0.703608828263358
Merged-chr2-32132806-4	chr2	32132704	32132904	+	940.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-18344.0	NM_172661	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	4.68407384507026	4.57629424140578	4.48399027364501	4.33412920263758	5.12024904792719	4.65907341493124	4.54695907982032	4.24388184382559	0.390052237942527	0.333410121030352	0.644168155175469
Merged-chr1-181126928-4	chr1	181126801	181127001	+	861.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026171, intron 10 of 22)	intron (NM_026171, intron 10 of 22)	17303.0	NM_026171	67459.0	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	3.61437462565472	3.99209874641666	3.66888088749718	3.65588561406451	3.55991554994405	3.73207106827582	3.54524338624975	3.66682389259238	-0.359174102135068	0.453883972283873	0.737754498942563
Merged-chr9-7577551-4	chr9	7577442	7577642	+	935.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310717, intron 5 of 9)	intron (NM_001310717, intron 5 of 9)	6146.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	4.43318257563505	4.08747969780662	4.21147002311821	4.36599832230734	4.55628066316951	4.06822747369845	4.28597478644632	4.81435371578565	0.423965318691486	0.308129993250687	0.620499730703869
Merged-chr8-82940128-4	chr8	82940001	82940201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	76745.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	6.99796610978049	6.49018411342763	7.32551349754224	7.53291513860111	5.65945352723991	5.82314713530134	6.15419113337552	5.75471182998149	-1.90604866078736	3.86679056273088e-11	3.15274095606668e-09
Merged-chr8-108731020-4	chr8	108730926	108731126	+	839.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	16382.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	3.89893510052644	3.91859070424036	3.84795713666153	4.13414202694538	3.91508520963905	4.11932223988168	3.60647883695016	4.08453756247935	-0.0599904377753344	0.895359661220713	0.960823579379062
Merged-chr7-141455091-4	chr7	141454997	141455197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163689)	promoter-TSS (NM_001163689)	-91.0	NM_025802	66853.0	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	7.55355585351725	7.4258171082542	6.97627172372118	6.95218292780485	7.49375118055506	7.43896638841357	7.21500491466875	6.79993619903107	0.0266379716771354	0.912935710194952	0.96737778834115
Merged-chr7-112258725-3	chr7	112258620	112258820	+	876.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001193305, intron 2 of 25)	intron (NM_001193305, intron 2 of 25)	32884.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	2.75055310032061	3.04760688727109	3.06247648740061	2.92181513720175	2.40604654685836	2.42916922359373	2.48010429789448	2.48479300611758	-3.43973176920382	0.00016003053305231	0.00301503793333255
Merged-chr2-61711688-4	chr2	61711623	61711823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021526)	promoter-TSS (NM_021526)	29.0	NM_021526	59029.0	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	7.38663547997299	7.33585833028483	7.33639378734055	7.73945109023225	7.63172361816373	7.59495676448029	7.44829765362672	7.60479546067089	0.128863758911752	0.499251800880869	0.768235079100557
Merged-chr1-138131334-4	chr1	138131176	138131376	+	901.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	43850.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	3.50662828555612	3.82681477658239	3.62134084984488	3.96682250618497	3.65220223551615	3.49531823598925	3.6603064382179	3.77354833914856	-0.328595631068505	0.50451996969927	0.77082568307771
Merged-chr4-136149199-2	chr4	136149099	136149299	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5377.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	4.26643332627643	4.19104044349348	3.88865697954501	3.99009081608507	3.94781726330944	3.95435406717018	4.02665088012225	4.41792816804473	0.0284282163193982	0.947887729970509	0.981348536548879
Merged-chr6-43637397-4	chr6	43637285	43637485	+	848.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 2 of 8)	intron (NM_013861, intron 2 of 8)	28893.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	3.80325836511622	3.60184221162206	3.55887959066257	3.05730593243714	3.62673201442282	3.56304867430166	3.59655332595152	3.38427952608159	0.0707087470912245	0.898215614128533	0.962065897194415
Merged-chr1-93485473-4	chr1	93485357	93485557	+	865.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159719, intron 1 of 12)	intron (NM_001159719, intron 1 of 12)	6396.0	NM_001159719	18000.0	Mm.428652	NM_010891	ENSMUSG00000026276	Sept2	AW208991|Nedd-5|Nedd5|mKIAA0158	septin 2	protein-coding	4.13404082524328	3.69040307796908	3.44644974690804	3.62268784425527	4.40066771287699	4.2624891968823	4.46212791282823	4.03929898664561	1.49097526053049	0.0013274958363763	0.0169355851900349
Merged-chr14-14843244-4	chr14	14843147	14843347	+	907.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195229, intron 7 of 34)	intron (NM_001195229, intron 7 of 34)	22432.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	4.97930934599339	5.09812031568343	5.32753038552582	5.32874255023046	4.31446739514934	4.68358934867569	4.81593555211113	4.34585038154453	-1.34514537635013	0.000179721814788	0.00333135912885288
Merged-chr12-8913172-4	chr12	8912988	8913188	+	790.303589	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8219.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	3.15037182780181	2.99532180758809	3.6311341601787	3.34647845398597	3.0643236641813	3.26317503059774	3.37279905755132	3.48812181240095	0.00542951186552571	0.992589755588752	0.997258162727074
Merged-chr10-75860938-4	chr10	75860860	75861060	+	751.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010798)	promoter-TSS (NM_010798)	-710.0	NM_010798	17319.0	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding	3.78756967653793	3.82166958317053	3.7341683852574	3.71726896885964	4.12868086488089	3.8534708742757	3.66412487800708	4.11016496246183	0.559671122833365	0.214326616911004	0.52008175481397
Merged-chr3-59309869-3	chr3	59309780	59309980	+	723.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 42 of 43)	MLT1C|LTR|ERVL-MaLR	34376.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	2.87453066037946	2.83221524682806	3.09941319802329	3.07067190141451	2.55225371555792	2.78186711951042	2.92366060100698	2.67547577571788	-1.14517799897631	0.0848955928098234	0.31700943266553
Merged-chr8-41239539-4	chr8	41239442	41239642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023662)	promoter-TSS (NM_023662)	-217.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	8.76574360168885	8.94116480137724	8.92588492589712	8.87040867829081	8.69282260963415	8.58859103678546	8.87132343318177	8.61727858791338	-0.224565670781152	0.133398526898617	0.40669780897403
Merged-chr7-16463374-3	chr7	16463288	16463488	+	753.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008718, exon 6 of 12)	exon (NM_008718, exon 6 of 12)	10609.0	NM_026938	69094.0	Mm.29633	NM_026938	ENSMUSG00000019158	Tmem160	1810008O21Rik	transmembrane protein 160	protein-coding	3.50754339253024	3.52052554251705	3.56188093636685	3.46425755669179	3.72468296045461	3.566058345991	3.43905234465868	3.45001239683649	0.155840910978417	0.750060844488247	0.901576629816678
Merged-chr9-118913234-4	chr9	118913137	118913337	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13299.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	5.76356998739364	5.29133103359566	5.52444169098089	5.49213547552027	5.35269780590469	5.43691899289912	5.54807589652141	5.04513176380673	-0.289745891214433	0.328991086068485	0.64023557839208
Merged-chr3-123168964-1	chr3	123168864	123169064	+	540.0	f0_c57.idr	intron (NM_080451, intron 1 of 4)	intron (NM_080451, intron 1 of 4)	67185.0	NM_080451	118449.0	Mm.34359	NM_080451	ENSMUSG00000050315	Synpo2	1110069I04Rik|2310068J10Rik|9530006G20Rik|AI848603|Myo	synaptopodin 2	protein-coding	3.38319838538447	3.36456943858682	3.25924210755795	3.03979846249755	3.43071512391551	3.43904063935118	3.89260972037527	3.69643280127473	1.25953112160829	0.0173017133914766	0.116038693818139
Merged-chr2-166714864-3	chr2	166714778	166714978	+	780.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1046.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	3.03893121939827	2.94148712078953	3.20884799673181	3.13093744895803	3.32101611560713	3.01922900489338	2.9036694941651	2.91120640919868	-0.0976731183075704	0.871476104720323	0.951627503185851
Merged-chr2-145804778-4	chr2	145804680	145804880	+	864.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	L1MB3|LINE|L1	18664.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	4.31196259961537	4.2886580549857	4.31262044233171	4.8363460320905	4.13104336292145	4.34641104380389	4.33721289434493	4.35400073265927	-0.455097668959463	0.27120455972908	0.582992988776974
Merged-chr15-95851132-1	chr15	95851032	95851232	+	596.666687	f0_c57.idr	intron (NM_001253813, intron 2 of 20)	MTB|LTR|ERVL-MaLR	-21060.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	3.62524399507957	3.44065910906038	3.46207468614095	3.29659319844728	3.93085125572863	3.31946380409861	3.66024510124969	3.62365240582339	0.672866292716877	0.191298988521792	0.490711638465125
Merged-chr4-88412571-4	chr4	88412467	88412667	+	871.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025760)	TTS (NM_025760)	26359.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	4.1464076148866	4.03046527173796	4.19650947200661	4.63132673800387	4.1615298733858	4.16761188597657	4.65379107185869	4.63994236046923	0.314088507900939	0.478046979814027	0.754192228775143
Merged-chr13-108329963-3	chr13	108329905	108330105	+	688.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178683, intron 2 of 10)	intron (NM_178683, intron 2 of 10)	13668.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	3.0487562896417	3.13088533155993	2.98948742846565	2.80211676688115	3.11825001150058	3.03506320403979	2.91726279716808	2.92559304499198	0.0640903943861592	0.914230570732441	0.967945645393572
Merged-chr5-21055464-4	chr5	21055327	21055527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	CpG	484.0	NM_001356591	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	5.2046151263894	5.40869094767574	5.65386932206578	5.06486023779057	5.22884197892889	5.20603805336187	5.57724591624435	5.74061594062666	0.20486049088134	0.521669212496305	0.781526622248579
Merged-chr9-106438391-4	chr9	106438280	106438480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276442)	promoter-TSS (NM_001276442)	-144.0	NM_025371	109652.0	Mm.7165	NM_025371	ENSMUSG00000023262	Acy1	1110014J22Rik|Acy-1	aminoacylase 1	protein-coding	7.93531599988658	8.09940710073863	7.70059430822882	7.81793661084711	7.93632737417724	7.99788143369021	7.93927175209853	7.3054743628714	-0.0921756120255991	0.657994034180411	0.857633602881183
Merged-chr7-34132628-4	chr7	34132529	34132729	+	972.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_207212, exon 1 of 8)	exon (NM_207212, exon 1 of 8)	639.0	NM_207212	101543.0	Mm.422738	NM_207212	ENSMUSG00000036459	Wtip	-	WT1-interacting protein	protein-coding	4.91675714395328	5.0422248043405	5.54757677413589	5.60537318925136	5.3613113660663	4.8901917070461	4.96900808093496	4.9524932478117	-0.473506230822653	0.181821127951025	0.478459317033014
Merged-chr10-80664598-4	chr10	80664508	80664708	+	994.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021462)	TTS (NM_021462)	-7537.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	5.55803398025879	6.06547939967045	5.38821815283459	5.28670111282886	5.651583633901	5.95115157955214	5.16589882423749	4.9978852928743	-0.188367613063802	0.604034057715895	0.828350269166784
Merged-chr8-46849059-4	chr8	46848914	46849114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109269.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	5.06262363236686	4.86386785876207	4.77746190188813	5.08084899801196	4.86221435092692	4.82998712099766	5.18811452616904	5.02762492798802	0.0383556198650766	0.906287572659561	0.9652936364149
Merged-chr10-24149247-4	chr10	24149164	24149364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358563)	promoter-TSS (NM_001358563)	-25.0	NM_001358563	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	8.46646102051667	8.20510744786827	8.42261482463725	8.38632177658039	8.36206098783655	8.38293225586174	8.50492962724533	8.1937545579449	-0.00893537985117581	0.955309859822602	0.984075265351039
Merged-chr8-25785277-4	chr8	25785149	25785349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026121)	promoter-TSS (NM_026121)	-40.0	NM_026121	67384.0	Mm.118400	NM_026121	ENSMUSG00000037316	Bag4	2410112I15Rik|SODD	BCL2-associated athanogene 4	protein-coding	7.92789628417674	7.89703511582729	7.70367310766723	8.09585586713838	7.83113864917941	8.16917432267383	8.03187831979818	8.01970698853905	0.117707854185271	0.505583288051558	0.771488881809541
Merged-chr7-31168584-3	chr7	31168480	31168680	+	908.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046062, intron 3 of 3)	intron (NR_046062, intron 3 of 3)	6222.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	3.94074497435098	3.87099925688847	4.31914756574178	4.21885408355176	3.68186886315054	3.96081963215102	3.77061591511605	3.66841059232489	-0.946773269632906	0.0396454482383608	0.20062017347919
Merged-chr5-99240754-4	chr5	99240674	99240874	+	970.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	12153.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.92318842542841	5.15262174821469	4.51822431688514	4.71470124345262	5.04176597718006	5.0964704059956	4.82929435601067	4.81186015935652	0.215273161354118	0.535838985124747	0.789968789424294
Merged-chr15-38515418-4	chr15	38515306	38515506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301688, intron 1 of 11)	intron (NM_001301688, intron 1 of 11)	3860.0	NM_001301688	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	5.43080651260311	5.60080702961068	5.98456677419231	6.04449489227456	5.71823388239396	5.48018792545442	5.82629346073106	5.89623544310918	-0.105159381593884	0.715809007368634	0.886371813543908
Merged-chr10-30620063-4	chr10	30619968	30620168	+	899.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1702.0	NM_025798	66847.0	Mm.46218	NM_025798	ENSMUSG00000019791	Hint3	0610010I17Rik|AV009015|HINT-3|HINT-4|HINT4	histidine triad nucleotide binding protein 3	protein-coding	4.1427947137747	4.55894610659237	4.24738675139302	4.5196973570537	4.5766197681969	4.47319402094541	4.53644728098846	4.89668702197187	0.530686918397046	0.169301726441274	0.461822724438512
Merged-chr6-108197313-4	chr6	108197212	108197412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11729.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	7.01842295895181	7.02049472440257	7.12533716041386	7.28379365496812	6.84748740441326	6.51790425675406	7.13358045638269	6.88581204112461	-0.356827303293624	0.0947261853409875	0.336772146565414
Merged-chr11-76482842-4	chr11	76482779	76482979	+	893.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	11616.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	4.59646373412382	4.32776697111279	4.22396399144211	4.43103281326948	4.61718781607422	4.39855658341612	4.20598796670265	4.17246932461099	-0.070911146957934	0.858131866174137	0.946507493877689
Merged-chr19-11917568-4	chr19	11917464	11917664	+	917.962524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172635, intron 2 of 18)	intron (NM_172635, intron 2 of 18)	5165.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	4.7841126859716	4.32005197115765	4.59168289729516	4.86180758580897	4.88648493310007	4.63737122230389	4.52874810185164	4.94901948849922	0.209343267184217	0.573713287622099	0.811967547495324
Merged-chr6-115901807-3	chr6	115901708	115901908	+	873.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167763, intron 15 of 28)	intron (NM_001167763, intron 15 of 28)	-30119.0	NM_145383	212541.0	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	3.75708087130574	3.87065885673108	3.43218380662923	3.37204362460034	3.4032669615231	3.92648333587291	3.29257916961085	3.65579028658002	-0.101867605594036	0.851240844639889	0.943894442930937
Merged-chr9-107542102-4	chr9	107541983	107542183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019720)	promoter-TSS (NM_019720)	110.0	NM_001357290	56368.0	Mm.24833	NM_019720	ENSMUSG00000037190	Cyb561d2	AW049681|Tsp10	cytochrome b-561 domain containing 2	protein-coding	5.84760573332622	5.7716095923704	5.87135543048973	5.58505690799986	5.56925773586083	5.90366958231136	5.88538006498074	5.8444709124947	0.0625767331775166	0.810979480786712	0.926854276252049
Merged-chr10-99443648-4	chr10	99443545	99443745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-165526.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	6.8371860403647	6.55218806255585	6.63131539977515	6.6952895662011	6.43634594741183	6.05423818475651	6.58240149901586	6.30312566474462	-0.463517005045355	0.0405730213368417	0.203605970511496
Merged-chr8-69094359-4	chr8	69094294	69094494	+	862.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007509, intron 1 of 13)	intron (NM_007509, intron 1 of 13)	-5172.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	4.17046488690376	4.15356458807032	4.02931361622277	4.18835920422631	4.27944151790102	4.10032714652912	4.01281266688878	4.16854445783147	0.0243387310080955	0.951882036337669	0.982868085362717
Merged-chr9-40764226-4	chr9	40764119	40764319	+	934.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 2 of 6)	intron (NM_133733, intron 2 of 6)	-37054.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.77819718861762	4.70130683125514	4.88883628269708	4.87142670692295	4.43136203392068	4.51256763696317	4.99699932909868	5.37275699214795	0.140194195481005	0.720603715875598	0.888339803119369
Merged-chr17-28085131-4	chr17	28085026	28085226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4487.0	NM_001085555	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	5.83497983640432	5.95511236544106	5.3637646445788	5.7970388583699	6.39308826074506	6.49626351253001	5.98899981909669	6.11820621477782	0.788319770234672	0.00336874892694049	0.0349794573115532
Merged-chr14-57729598-3	chr14	57729476	57729676	+	923.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153382, intron 1 of 1)	intron (NM_153382, intron 1 of 1)	4842.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	3.61992968698924	3.38194698170006	3.37473530611882	3.67998137665065	2.79672304402542	2.95973273160189	2.99232090206245	3.37279011309887	-1.92606220458794	0.00267477231416161	0.0292184804404097
Merged-chr8-127439944-4	chr8	127439888	127440088	+	969.125	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033620, intron 20 of 24)	intron (NM_033620, intron 20 of 24)	140336.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	2.72732467963598	2.51797224948542	2.57869136404036	2.52008891371421	3.06427984002375	3.2645493811051	2.85139104820379	3.14639140891931	2.35712654204579	0.000263330348835215	0.00455273036185129
Merged-chr7-19888037-3	chr7	19887948	19888148	+	785.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177036)	promoter-TSS (NM_177036)	-83.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	3.73771490110237	3.8393176150661	3.73824940624698	3.61749691646284	3.51386788534876	3.63318367572216	3.81940551287414	3.73608768860375	-0.165533334158476	0.724230055402913	0.890108631350396
Merged-chr10-17215209-4	chr10	17215105	17215305	+	953.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119423.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	5.30863480339815	4.70691084330465	4.92258657337479	5.30480817895224	5.09051711774529	4.94185110067915	5.28291462855486	5.18965677413198	0.0658845304298052	0.844700523392476	0.941143281749284
Merged-chr17-50504678-4	chr17	50504574	50504774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4873.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	7.013007649842	6.81529257582811	6.54679598241813	6.85911417456653	6.68753423836191	6.99917437904197	6.59596505075236	6.87202224173991	-0.0411205731512705	0.84887795537267	0.942919537850675
Merged-chr6-120915042-4	chr6	120914935	120915135	+	853.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007544, intron 1 of 5)	intron (NM_007544, intron 1 of 5)	1789.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	4.28297537960928	4.105522204184	4.48564718884296	4.37155154869982	3.92318386946973	4.57790486546807	4.17460902661785	4.04142906027804	-0.308641578417388	0.470530132005997	0.749241586333353
Merged-chr14-55760315-4	chr14	55760224	55760424	+	877.8583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-1104.0	NM_020490	57260.0	Mm.159670	NM_020490	ENSMUSG00000040432	Ltb4r2	5830462O07Rik|BLT2|LTB4-R 2|LTB4-R-2|LTB4-R2	leukotriene B4 receptor 2	protein-coding	4.56989261128282	4.40423428239338	4.13367955576901	4.31571410517118	4.64311422250129	4.36072142966704	4.30754141454839	4.36795707628917	0.174990909623728	0.65119798942217	0.853841168792702
Merged-chr4-144980224-3	chr4	144980096	144980296	+	734.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 68 of 69)	intron (NM_001276465, intron 68 of 69)	87059.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	3.6618759674891	3.75857297970035	3.30019917082832	3.40726330350095	3.40651195385565	3.47165376385553	3.10074418463278	3.10798124969902	-0.927700373777291	0.105250955767244	0.356966587914264
Merged-chr6-125074151-3	chr6	125074061	125074261	+	639.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163268, intron 1 of 1)	intron (NM_001163268, intron 1 of 1)	2884.0	NM_001163268	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	3.29074850388344	3.26643242758435	3.17304439428886	3.18371043370227	2.98828334447419	3.51551859171442	2.96505252347084	3.49703256555862	0.132635337239467	0.8209511894447	0.931443689364036
Merged-chr18-84313715-3	chr18	84313620	84313820	+	876.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	225562.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	3.40642215709262	3.6435699040749	3.40683664774913	3.03008137338931	4.08679295824961	3.92347936867346	3.7832509787083	3.8913848808147	1.74117619083965	0.000702882328525617	0.010158469291802
Merged-chr17-17890272-4	chr17	17890154	17890354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008039, intron 1 of 1)	intron (NM_008039, intron 1 of 1)	2430.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	5.51951311228853	5.28809827101288	5.28912514751376	5.50419650131432	5.41886424326189	5.6667094465914	5.35416649022122	5.34732742816451	0.0655262974882668	0.816521976081424	0.929372165400724
Merged-chr1-93444470-2	chr1	93444370	93444570	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133808, intron 1 of 27)	intron (NM_133808, intron 1 of 27)	1231.0	NM_001301364	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	2.9256969053581	2.65938096393725	2.80278610874573	2.63893612970462	3.0029075760439	2.91024401881821	2.91488058307034	2.86445440917669	0.796019098191581	0.193351545623642	0.493529716199714
Merged-chr5-96896226-3	chr5	96896116	96896316	+	788.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25056.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	3.52923735440519	3.24826115415075	3.75700708483366	3.8463682252901	3.09913660908807	3.09151952976621	2.97260858626746	3.18808120971154	-2.03743380858244	0.000847353740793987	0.0117823387216205
Merged-chr9-123800002-4	chr9	123799877	123800077	+	892.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 15 of 17)	G-rich|Low_complexity|Low_complexity	-6500.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	4.32787960668029	4.38243778222212	4.65617782676699	4.56667534289962	4.07221953902847	4.50418729617905	4.48200999255137	4.75674187981006	-0.0585643910565967	0.883523352105867	0.956243479602584
Merged-chr4-3695725-4	chr4	3695636	3695836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	MTEb|LTR|ERVL-MaLR	17615.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	5.84861684912996	6.20948912602396	6.26587308159263	6.29091359338693	6.51786703321537	6.36457923204431	6.23379098706993	6.08120522943599	0.214705951117909	0.380902179586955	0.683255242866577
Merged-chr2-144337435-4	chr2	144337334	144337534	+	951.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-5354.0	NM_026924	107586.0	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	4.55303949377692	4.64250911366421	4.6664065819519	4.38763202111268	4.43274289013496	4.46942712019176	4.32174430979422	4.42738810968104	-0.323604103101688	0.37928663402188	0.681869101180597
Merged-chr14-73172703-4	chr14	73172587	73172787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 10 of 14)	intron (NM_134083, intron 10 of 14)	29902.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	8.43577485323888	8.18076642458673	8.8190086933037	8.61538439295582	7.91950772254877	8.23665269535915	8.29343204854854	8.01900887797512	-0.522830535708376	0.00700983653940362	0.0609371220124829
Merged-chr13-91460963-4	chr13	91460844	91461044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024186)	promoter-TSS (NM_024186)	-153.0	NM_024272	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	8.35158023897833	8.18636117525156	8.42503230576897	8.46378041863629	7.97125398898488	8.24598654135025	8.34003950936046	7.90709902231996	-0.302922086248178	0.0856135791653084	0.318707445413073
Merged-chr4-148041118-4	chr4	148041034	148041234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161798)	promoter-TSS (NM_001161798)	-55.0	NR_027809	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	6.46438506508166	6.441254107426	6.58239728069424	6.28206515587769	6.76165166914969	6.65966112268498	6.85662741000728	6.74174174136978	0.470300957332859	0.0235123696605135	0.142348129630491
Merged-chr17-35059788-4	chr17	35059688	35059888	+	913.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016765, intron 1 of 6)	intron (NM_016765, intron 1 of 6)	753.0	NM_016765	51793.0	Mm.1457	NM_016765	ENSMUSG00000007039	Ddah2	1110003M04Rik|AU019324|AW413173|DDAH-2|DDAHII|Ddah|G6a|NG30	dimethylarginine dimethylaminohydrolase 2	protein-coding	4.6375850268057	4.68702585148736	4.28705958324607	4.0731784424251	5.01181240346165	4.77237953591442	4.49665558950278	4.55606174458465	0.657029292258177	0.101438796652587	0.349490825767668
Merged-chr8-122430419-4	chr8	122430321	122430521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301284, intron 1 of 4)	intron (NM_001301284, intron 1 of 4)	2519.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	7.44609303831044	7.71350879985504	7.15892582809921	7.15632223831322	7.41205743396428	7.65271054076921	7.40093608270885	7.55172351137207	0.16001101680801	0.437235210601998	0.725557644444268
Merged-chr1-134070942-3	chr1	134070874	134071074	+	754.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8181.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	3.35233099559582	3.35083868713776	3.24428218967459	2.90222752996008	3.15626481398016	2.96136061081743	2.9173350182017	3.49765659909204	-0.250357200293502	0.686793703673013	0.871908413750359
Merged-chr10-111996069-4	chr10	111995972	111996172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028608, intron 1 of 5)	L1MA7|LINE|L1	1192.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	5.69476432797499	5.42905221695422	5.85022044712987	5.90725771601888	6.41833085506292	6.34398384010754	6.02052137944677	6.06775342213874	0.761942451413018	0.00389934264738281	0.0392798344605238
Merged-chr14-74906164-4	chr14	74906077	74906277	+	839.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	41700.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	4.72842109790651	4.90946209873346	4.44791506698159	5.00691525563722	4.32519500598349	4.48523858418318	4.13044564213467	4.72603030036368	-0.817340941205016	0.0383529036037323	0.196383089389976
Merged-chr19-59036948-3	chr19	59036859	59037059	+	961.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 5 of 16)	intron (NM_001114312, intron 5 of 16)	39110.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	4.59306201359031	4.59354961813878	4.27641906319756	4.35384734388256	4.54721533477359	4.09757964508229	4.01288823771624	3.97121530607926	-0.631445069000525	0.144494731585735	0.423657174526788
Merged-chr11-55470628-8	chr11	55470489	55470689	+	990.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013716, intron 1 of 11)	intron (NM_013716, intron 1 of 11)	837.0	NM_013716	27041.0	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	5.02936253612184	5.55156776082023	5.25511618822476	4.25808064641367	5.1828398389575	5.30657169607866	4.85821756140504	5.30891025578548	0.13322486442137	0.745198474909496	0.899431814827356
Merged-chr4-120667237-4	chr4	120667133	120667333	+	855.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019563, exon 1 of 1)	exon (NM_019563, exon 1 of 1)	670.0	NM_019563	56222.0	Mm.272646	NM_019563	ENSMUSG00000070803	Cited4	MRG-2|Mrg2	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	protein-coding	3.60921713732097	3.48440669859143	3.82293604680053	3.94187728300375	3.63580009740645	4.08519494830762	3.53770275140275	3.91517548037444	0.20455243687241	0.683774310635904	0.87046260876057
Merged-chr8-116264641-4	chr8	116264545	116264745	+	851.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-240370.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	3.77851756342207	3.79017412839395	4.1675635974752	3.87701241319936	4.27282284198964	4.00786701037247	4.06306772482939	4.03273969767528	0.535864326099797	0.213474208186078	0.518898614507987
Merged-chr2-160252130-4	chr2	160252023	160252223	+	969.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	75371.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	4.69611118407609	4.68569140696161	5.60972198422094	5.44841711811073	5.07315341212219	4.96188846748193	4.98649960492296	4.97214866402793	-0.351487392788255	0.356157639818975	0.662704502355483
Merged-chr11-80176020-4	chr11	80175929	80176129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 8 of 10)	intron (NM_172133, intron 8 of 10)	-7843.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	5.57825318701414	5.40550327732897	4.96167307849111	5.32172690564312	5.2677877701825	5.32262096564171	5.28125611824112	5.49984536414762	0.0138619341302173	0.963227522551674	0.98685387184598
Merged-chr3-88058414-4	chr3	88058304	88058504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144897)	promoter-TSS (NM_144897)	91.0	NM_144897	246703.0	Mm.205996	NM_144897	ENSMUSG00000028070	Naxe	AA087124|AI-BP|AIBP|Apoa1bp|Apoa1ip|ESTM37	NAD(P)HX epimerase	protein-coding	6.27408909162863	6.18889348397077	6.70691931560638	6.17666247560758	6.0229810970519	6.35424074123945	5.88462870402075	6.41147939673971	-0.254784858894077	0.333193099724134	0.644020579610427
Merged-chr17-65730123-4	chr17	65730026	65730226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	42626.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	6.85146476842153	7.31758631362291	7.15866316513243	7.41040045999824	7.55610663895811	7.41604003380749	7.58078147500619	7.48386710358331	0.397343938385452	0.0455271717810098	0.218608055068724
Merged-chr6-97857905-4	chr6	97857788	97857988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	50830.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	6.39300427142477	6.58650113978663	6.52901106077601	6.67118017842129	6.54887139198153	6.40012711571463	6.39634534507421	5.97208927361236	-0.29712500842652	0.205189485716776	0.508840054434091
Merged-chr8-111642736-5	chr8	111642675	111642875	+	906.3800050000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011742)	promoter-TSS (NM_011742)	-668.0	NM_001037665	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	4.69559142783715	4.48966382668052	4.46050032395495	4.4198634296425	4.581140291096	4.9297440911176	4.56263026272254	4.17426093730057	0.162940806985503	0.674186916858313	0.866052166667711
Merged-chr12-55450561-4	chr12	55450469	55450669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	42078.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	7.55128116989845	7.62650406790411	8.35737279323916	8.16500309548652	7.55367177374455	7.60300421632062	7.8269259253413	7.54737188720246	-0.440123026359909	0.0516831651197189	0.236338286480134
Merged-chr11-96765834-4	chr11	96765747	96765947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11708.0	NM_028965	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	7.11338102778243	7.4059016487881	6.99070270953925	7.10548022194711	7.30223870824517	7.24329940332558	7.20232863475109	7.12139469298797	0.0787055433758569	0.682101155354244	0.869682098720609
Merged-chr17-34644726-4	chr17	34644636	34644836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019873)	promoter-TSS (NM_019873)	-147.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	7.27707138020944	7.14372204530784	6.70982704668858	6.63793985959008	7.1362424617782	7.25016662831513	6.97837726414707	6.53838834839006	0.0561433872515991	0.823986688440783	0.932476232435989
Merged-chr16-19768248-3	chr16	19768144	19768344	+	992.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159408, intron 4 of 4)	intron (NM_001159408, intron 4 of 4)	8010.0	NM_001159407	108105.0	Mm.33935	NM_054052	ENSMUSG00000022686	B3gnt5	beta3GnT5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding	3.59360039122568	3.46531766141837	3.84508583921588	4.01992773830171	3.34255101377574	3.7664918242122	3.633676106618	3.53558993945042	-0.585160298187237	0.259761253704978	0.571563806638815
Merged-chr1-125466827-4	chr1	125466735	125466935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31108.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	7.29142129074462	7.34754894304486	7.56776928126884	7.60447229643375	7.12013548636118	7.00092034219005	7.41496945237536	7.41838667167478	-0.290307860340686	0.144976672875182	0.424163709136648
Merged-chr9-50553785-4	chr9	50553666	50553866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357222)	promoter-TSS (NM_001357222)	-104.0	NM_001359610	170752.0	Mm.390149	NM_133217	ENSMUSG00000032066	Bco2	B-diox-II|Bcdo2|Bcmo2|CMO2	beta-carotene oxygenase 2	protein-coding	5.86111902380076	5.62281383531408	5.29555840993907	5.54586321286966	5.46598784429162	5.30199432807816	5.53077909346729	5.44465555844094	-0.263687011793826	0.353336354728068	0.660177666767879
Merged-chr4-148069932-4	chr4	148069840	148070040	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	18124.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	5.93646746213914	5.73176478859358	5.01669997604584	5.47415177659083	6.09855968031091	6.17300571656974	5.39472882500348	6.015169714438	0.611360751370512	0.0638068476632146	0.268263887171881
Merged-chr2-129300666-1	chr2	129300566	129300766	+	635.0	f0_c57.idr	3' UTR (NM_010554, exon 7 of 7)	3' UTR (NM_010554, exon 7 of 7)	3296.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	3.21387263525819	3.75070244470925	3.14469413416705	3.10161784280232	3.82132259651576	3.57860132345068	3.65321794865698	3.45961946205938	1.01533300726301	0.0693289686153889	0.281553394067301
Merged-chr18-73753014-4	chr18	73752914	73753114	+	897.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053255, intron 1 of 3)	PB1D10|SINE|Alu	1465.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	5.7913385651477	5.6413145401409	6.07282157036873	6.08170206549324	4.52768382009834	4.57966683061252	4.81666243567585	4.69920093506359	-2.38310388360641	3.30171173410425e-13	3.8845047854844e-11
Merged-chr13-91636993-4	chr13	91636910	91637110	+	936.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 4 of 15)	intron (NM_001360776, intron 4 of 15)	-104511.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	5.25892212986304	5.16530166215829	5.07640889562646	5.28688862548758	4.65776124672576	5.18291245928519	4.79995590096028	4.9703074303748	-0.584612958253813	0.0710034810874155	0.285792624989886
Merged-chr15-81155465-3	chr15	81155366	81155566	+	744.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 1 of 13)	intron (NM_001082536, intron 1 of 13)	35291.0	NM_001082536	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	3.54407409523216	3.59807048327715	3.54454605695955	3.43132674808904	3.7346271739749	3.66014526354736	3.53089878897	3.59639546163904	0.364921415197966	0.44273241883847	0.729490285434929
Merged-chr15-59951375-2	chr15	59951275	59951475	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65243.0	NM_027668	71088.0	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	2.69169174792406	2.74001832332024	2.69193651923645	3.04015649008327	2.83526387513788	3.05186980386178	2.8760649492459	2.99955458493293	0.562859679060544	0.386719510951721	0.687797608117846
Merged-chr1-173737178-4	chr1	173737070	173737270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204910, intron 1 of 7)	ORR1E|LTR|ERVL-MaLR	4639.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	7.58866682508589	7.50109313093766	7.27652689442768	7.61002410544045	7.64792698523126	7.87476770943908	7.386605727814	7.36777005315602	0.106437958325793	0.591275757294725	0.821525680896513
Merged-chr13-45255465-4	chr13	45255356	45255556	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-134286.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	5.68587368107021	5.30493505209091	5.83488015317749	5.84418708593776	4.80223549436831	5.00216891628089	4.92026774297685	5.01837920411567	-1.39519815498241	7.73985057507631e-06	0.000219225954669064
Merged-chr8-11006100-6	chr8	11006100	11006300	+	860.2999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081212, exon 1 of 2)	exon (NM_001081212, exon 1 of 2)	-1650.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	3.35444497262182	3.34357091359342	3.07617748321867	3.63668223358507	2.63432091765796	2.83149992565314	2.79421643846102	3.19322348219559	-2.19052398702814	0.00212362413742141	0.0244908364351131
Merged-chr5-121584330-4	chr5	121584232	121584432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009656, intron 1 of 12)	intron (NM_009656, intron 1 of 12)	9492.0	NM_009656	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	7.36756252344736	7.22301351103465	7.29779362456444	7.39723752858975	6.97471659314527	7.35444361730177	7.30234612183862	7.37353062539642	-0.100641892801166	0.59885287798835	0.826116548064469
Merged-chr10-98805246-4	chr10	98805146	98805346	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109396.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	4.58246551374609	4.78895580737611	4.62576438502959	5.33879078859847	4.49995127945949	4.31255832616946	4.86607320322185	5.04613496177788	-0.365723409179361	0.382127962521666	0.684238214631303
Merged-chr8-104334047-4	chr8	104333958	104334158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-6536.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	7.79167209800094	7.52929356655857	8.14248034257588	7.99798875243407	7.80472009446255	7.63474254385579	7.83747916137022	7.84823626769129	-0.132730473068744	0.490513980541392	0.762251978763558
Merged-chr15-5518121-2	chr15	5518021	5518221	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045274, intron 1 of 4)	intron (NR_045274, intron 1 of 4)	21803.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	3.39556127045278	4.0261956147667	3.04622973179953	3.22805215516166	3.97294442573018	3.57405546368391	3.50034226455986	3.56763339142257	0.576069001743133	0.351459639105887	0.658893189148013
Merged-chr19-8983497-4	chr19	8983380	8983580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5804.0	NR_104460	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	6.42015174696339	6.13118984081764	6.28550044502223	5.82051771313418	5.89463034374185	6.18207697593392	6.38832501850609	5.90831472007273	-0.0971011915638516	0.719760221756533	0.888022825078143
Merged-chr1-184023260-4	chr1	184023167	184023367	+	866.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10731.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	4.20266229966576	4.45304206068517	4.20328852167477	4.30768063798438	4.30948639265198	4.17990308667785	4.23021420537345	4.20075582805756	-0.15746032128437	0.685342107366275	0.871330007833379
Merged-chr7-80799395-3	chr7	80799296	80799496	+	818.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	3935.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	3.32994067072914	3.60821669924395	3.19536787278979	3.19829120378545	3.90689532926255	3.56988794820059	3.79241737913643	3.66685204165635	1.32020680780015	0.00955376932214785	0.0763647104526852
Merged-chr2-18765812-4	chr2	18765731	18765931	+	984.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4969.0	NR_126079	100041479.0	Mm.393659	NR_126079	ENSMUSG00000092353	Gm3363	-	predicted gene 3363	ncRNA	4.82986152436642	4.80834344956148	4.40157421672297	4.54396834746231	4.8184950082264	4.33023784654331	4.70467920728351	4.30298986202598	-0.180725888588389	0.642377212986408	0.849126571890498
Merged-chr11-98937608-4	chr11	98937504	98937704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177302)	promoter-TSS (NM_001177302)	-92.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	6.87081995618286	6.86363353636109	6.42897059344095	6.52583876795191	6.95420493787874	6.93723898531064	7.01049663309797	7.01768259842955	0.42224871444542	0.0439574090334825	0.213704283696076
Merged-chr13-113436462-4	chr13	113436353	113436553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	66391.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	5.88665736088561	5.72913122118139	5.64518668079062	5.91627935441243	5.63005657641513	5.76661458467662	5.90077965499866	5.69347719308823	-0.102221463837912	0.690511101593893	0.873977802876251
Merged-chr13-113865948-4	chr13	113865842	113866042	+	612.470825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	71434.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	3.80391100721583	3.68577069412007	3.2286221217521	3.16261245875479	3.43266247326779	3.87907861886369	3.69154988383372	3.80208470779339	0.670964606013274	0.220521215656337	0.528451996377299
Merged-chr16-10970147-2	chr16	10970047	10970247	+	780.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	B2_Mm2|SINE|B2	22974.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	3.23606761780617	3.44338585671036	3.04281868670427	2.66913207751721	3.26546111031162	3.46886613514926	3.28203592714121	3.50490479203204	0.931315255526789	0.1356657086384	0.4100445637016
Merged-chr14-75186436-4	chr14	75186334	75186534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	50009.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	6.6061331675886	6.69454080025891	6.06833910837661	5.80121609549735	6.31705602116051	6.88002649043525	6.22322460473381	5.84506727781652	0.043048013851654	0.894300645383273	0.960481560907683
Merged-chr14-17539517-3	chr14	17539414	17539614	+	951.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121446.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	3.7398757966816	3.4526233742121	3.58242619912936	4.13267234439105	3.39973969465962	3.23345098510399	3.4528750477951	4.08227230314741	-0.52588973843041	0.37478827389905	0.677891254741963
Merged-chr1-85601023-4	chr1	85600921	85601121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001013817, exon 1 of 17)	5' UTR (NM_001013817, exon 1 of 17)	318.0	NM_001013817	434484.0	Mm.445821	NM_001013817	ENSMUSG00000070031	Sp140	-	Sp140 nuclear body protein	protein-coding	6.36900910133572	6.21916729828388	5.62761851384615	5.46210072027364	5.7830850774093	5.93746065687261	5.87388743215014	5.65138113755984	-0.242677217173873	0.437590618711001	0.725755822849462
Merged-chr17-24251446-4	chr17	24251343	24251543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007634)	promoter-TSS (NM_007634)	-34.0	NM_007634	12449.0	Mm.77695	NM_007634	ENSMUSG00000072082	Ccnf	CycF|Fbxo1	cyclin F	protein-coding	8.21751470036799	8.52047692899142	8.48107690993658	8.54021132543404	8.36759265351961	8.50146607057685	8.45648623491267	8.33495936894095	-0.0451639764686941	0.7749536251951	0.912134538607699
Merged-chr8-126565398-4	chr8	126565260	126565460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28076.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	6.97304024857109	6.84194693668416	6.73360476695703	6.80886645709614	6.73795753976524	6.7204078144369	6.72837093054372	6.74346436335723	-0.151197250550642	0.438324596765937	0.726330030804391
Merged-chr2-68796217-4	chr2	68796115	68796315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65226.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	6.37898267486267	6.59001547866916	6.41478975330057	6.44798974893947	6.43269009884263	6.4073743714101	6.07511469785888	6.01151240512396	-0.311597820333881	0.180996591691239	0.477419173614626
Merged-chr18-61068590-3	chr18	61068488	61068688	+	896.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 9 of 22)	intron (NM_008809, intron 9 of 22)	23438.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	3.86978817930207	3.97884668855819	3.76032184685539	3.9267515255047	4.14356471152844	3.93735711150534	3.80152364452809	4.38117776491165	0.528536325817036	0.233465072456567	0.543123010560797
Merged-chr8-119425825-4	chr8	119425714	119425914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11348.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	7.23722678344161	7.28602059355955	7.32214041791158	7.47138568752017	7.27091301158098	7.06981722945428	7.22365207988188	6.91515320369487	-0.279466116266221	0.144108961204018	0.422851502578151
Merged-chr18-5320314-4	chr18	5320210	5320410	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360447, intron 1 of 4)	L1M4b|LINE|L1	14129.0	NM_178722	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	4.90249095622809	4.93531917008149	4.72148772069245	4.77101385857474	4.99196239375031	4.38732786999719	5.00704086787287	4.55198724326271	-0.11911782451421	0.74393172331441	0.899145081565487
Merged-chr6-129418134-4	chr6	129418034	129418234	+	742.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205363, intron 4 of 6)	intron (NM_001205363, intron 4 of 6)	9272.0	NM_001205364	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	4.22233459211993	4.30652864336937	3.79600782546188	3.94157593734129	4.50144019545399	4.56336686823957	3.95647116911809	4.46793702654395	0.774024285884257	0.075115671065164	0.2957713310144
Merged-chr12-12229759-2	chr12	12229679	12229879	+	875.166626	f0_balb.idr|f1_balb.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-32360.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	4.25474783706294	3.77617512026466	3.70884763633696	4.35217517431482	3.25888668021414	3.24475752502606	3.33839726989677	3.34799232003466	-2.61506374023809	6.99118308837629e-06	0.000200251678489954
Merged-chr1-128642440-4	chr1	128642330	128642530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50131.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	6.35145401776503	6.69005155897382	6.45811306531836	6.92574303665691	6.25756481108927	6.02148637267926	6.28299121851575	6.38417427212145	-0.588441241467419	0.0157890661692567	0.108780305868729
Merged-chr2-92609152-2	chr2	92609052	92609252	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356552, intron 2 of 3)	intron (NM_001356552, intron 2 of 3)	8035.0	NM_001356553	76969.0	Mm.38021	NM_023850	ENSMUSG00000027221	Chst1	2610008E20Rik|AW125896|C6ST|GST-1|Gst1|KS6ST|KSGAL6ST|KSST	carbohydrate (keratan sulfate Gal-6) sulfotransferase 1	protein-coding	2.44286512695475	2.31851470324221	2.64327319151899	2.49883666417474	2.60510927085442	2.68523819019796	2.63351197171083	2.70220354143738	0.907124017575417	0.18053052011233	0.476896711489164
Merged-chr12-69513386-4	chr12	69513270	69513470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37820.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	5.53500043095177	5.89115904708147	5.62086034483608	5.73735587434023	6.13007007392249	5.68417891684907	5.72175924634779	5.90881282059042	0.288613154141378	0.281218212355243	0.59334817221824
Merged-chr2-6711266-4	chr2	6711164	6711364	+	921.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	L2|LINE|L2	10398.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	4.63504226347819	4.79794621596539	4.45715181900386	4.77378133440069	5.37787928858343	4.63690387788743	4.76997441812167	4.75216788737777	0.523347147866267	0.16626743426867	0.45739103711385
Merged-chr3-95174340-4	chr3	95174215	95174415	+	971.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011351)	TTS (NM_011351)	9976.0	NM_011351	20360.0	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding	5.12465877919886	4.50184314688309	4.62853906766293	4.51681130717485	4.61696071806247	4.84204752456368	4.60705753211797	4.66545823505323	-0.0495126266925753	0.894082792563949	0.960481560907683
Merged-chr4-132601491-4	chr4	132601403	132601603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	37436.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	6.75399588770656	6.87195772616342	6.76907765603344	6.56840817145697	6.48534592524072	6.58000052084636	6.44145175500653	6.53785525490074	-0.326243131839828	0.11864440264603	0.381059370142085
Merged-chr1-135147539-4	chr1	135147430	135147630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026823, intron 1 of 6)	CpG	696.0	NM_026823	68724.0	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	7.78148012686366	8.08772343351441	7.806301624342	8.02322780084262	7.97247274249133	7.80867232954963	7.9555488808046	7.85429035824076	-0.0466328292348961	0.783021000189255	0.915463993932762
Merged-chr16-45657804-3	chr16	45657680	45657880	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172455, intron 17 of 17)	intron (NM_172455, intron 17 of 17)	-3662.0	NM_145389	212998.0	Mm.97511	NM_145389	ENSMUSG00000033187	BC016579	-	cDNA sequence, BC016579	protein-coding	4.82257700754767	4.39349127451008	4.77190620241644	3.91357493327412	6.83097544301685	6.9792287506951	7.21802206303721	6.94879155212253	4.37155188680407	3.78474044169764e-48	2.99326710999551e-44
Merged-chr3-115793508-4	chr3	115793447	115793647	+	942.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78492.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	4.75191350323206	4.86039572467961	5.33971178376741	5.23796799773226	4.5392459269631	4.67379263333347	4.94488858187838	4.39059812996392	-0.872024162520052	0.0187148964420815	0.12245887238931
Merged-chr1-84317960-4	chr1	84317880	84318080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33335.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	6.6923289663938	6.6767272667888	6.70761399522432	6.74287488907728	6.41055169362663	6.49280583734832	5.93474125439978	6.16944174549623	-0.635385310108628	0.00532402081692569	0.0497974346554473
Merged-chr4-62662258-4	chr4	62662164	62662364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-11710.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	5.79379215729227	5.91997830095382	5.23478835486864	5.46706558985943	6.05003806022731	5.99309006664941	5.9624050234354	5.71701537757558	0.51155163023112	0.0705479176033613	0.28469911249716
Merged-chr5-92441661-4	chr5	92441569	92441769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007644, exon 12 of 12)	3' UTR (NM_007644, exon 12 of 12)	-6470.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	8.07677970445867	7.97336993647101	7.85549222046058	8.01905236913144	7.97819613672324	8.07765984900984	8.22784105558224	7.9593444945306	0.100177424572288	0.539801645645031	0.792406302070178
Merged-chr12-3264578-4	chr12	3264470	3264670	+	928.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 2 of 5)	intron (NM_016676, intron 2 of 5)	28779.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	5.14938779257896	5.11171124159712	4.74468077019319	5.03968536947012	4.919996404051	4.79591829907173	4.64229561765758	4.78076824894123	-0.462186270958262	0.164567343763356	0.454830996687285
Merged-chr6-116472771-4	chr6	116472684	116472884	+	873.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11606.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	4.59383125196672	4.13025836134202	4.63117956942853	4.42863535528155	4.26378520992448	4.56676499480728	4.49694272305263	4.30109884377555	-0.109548793159401	0.778719790989539	0.913781420202775
Merged-chr17-26939650-4	chr17	26939564	26939764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026307)	promoter-TSS (NM_026307)	-126.0	NM_026307	67675.0	Mm.439919	NM_026307	ENSMUSG00000024194	Cuta	0610039D01Rik|1810022E02Rik|1810060C03Rik|2700094G22Rik|AI326454	cutA divalent cation tolerance homolog	protein-coding	8.759460070041	9.23170379079678	9.0065319204579	8.83779635485891	8.94078894913198	9.13126027538182	8.83066320084413	8.77215351251886	-0.056598206281065	0.74245951624142	0.898494026733066
Merged-chr10-125314258-4	chr10	125314161	125314361	+	947.5750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 1 of 5)	intron (NM_001358496, intron 1 of 5)	-5445.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	5.25592532275665	4.7784183411324	5.51463424137398	5.5307000119801	4.52994042106655	4.9545480612015	4.90819871838294	4.85256516229185	-0.966434657104873	0.00703401075252467	0.0610602858984136
Merged-chr19-11950068-4	chr19	11949963	11950163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-15781.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	5.36055873496147	5.49904688135444	5.64720978129992	5.58673195593063	5.70568924894773	5.91840694224968	5.93240640885547	5.56360148756753	0.424013222251001	0.112958242925473	0.371444336514893
Merged-chr12-80046792-4	chr12	80046698	80046898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	66215.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	7.82944672793858	8.01685377254473	8.23634117544937	7.91600873577477	7.72397969559872	7.89704903797349	7.68189397873274	7.77899054584905	-0.304528816742397	0.0805813089205435	0.307896356216376
Merged-chr10-118812143-4	chr10	118812062	118812262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56741.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	6.17585808257415	5.74874232574261	6.3051949050812	6.10766869646272	5.93664497482164	6.16613569935388	6.14531246349363	6.11331889378129	-0.0141877540904675	0.954566971606648	0.983787173349859
Merged-chr1-105167251-2	chr1	105167151	105167351	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-188756.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	2.86112368632991	3.0140012418011	3.12419104869321	2.91108153260775	2.96133755190291	3.50956991887456	3.11221765479563	3.23642775632196	0.933988703903076	0.11181985461927	0.369560543805778
Merged-chr18-39319421-3	chr18	39319295	39319495	+	698.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 20 of 21)	intron (NM_001361073, intron 20 of 21)	167850.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	3.21389835220164	3.04433211162521	2.79173120204075	2.81335494440024	3.44427872484551	3.79253567739721	3.14050564571805	3.43518128622692	1.89093470582589	0.00160958185601022	0.0197531770567158
Merged-chr16-24487844-4	chr16	24487751	24487951	+	906.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 3 of 12)	intron (NM_178665, intron 3 of 12)	39760.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	4.32060677895605	4.66931042800175	4.4140147805534	4.81357985101003	4.2964225896626	4.79089131702719	4.48009107524361	4.49772908572106	-0.148771081060455	0.703381470931038	0.880690314212345
Merged-chr3-109352206-2	chr3	109352106	109352306	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	11523.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	2.91096488930323	2.65062323391625	2.74091161546555	2.97463957085379	2.62865286623891	2.64697084711808	2.46590526073467	2.47075225617965	-1.41673857070301	0.0462382031856172	0.220870348604057
Merged-chr5-148674467-1	chr5	148674367	148674567	+	568.5	f0_c57.idr	Intergenic	Intergenic	-67373.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	2.81021937230192	2.73826199134239	3.16166097761402	2.47632486977865	3.50225062927973	3.56236494173928	3.47340762786761	3.38739421117016	2.90884918569873	1.396497451713e-05	0.000372289483578575
Merged-chr8-72320292-4	chr8	72320184	72320384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008452, intron 2 of 2)	PB1D7|SINE|Alu	1222.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	6.05339661193182	5.94781253244958	5.72484140386506	5.1913907316743	6.10572957920765	6.38458325154548	6.2490477894445	6.13037414651101	0.738814027746278	0.0113538609821012	0.0863876505446262
Merged-chr1-194989208-4	chr1	194989097	194989297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12238.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	5.72699055431196	5.28464691963728	6.08746943243856	6.27467104263496	5.14495117224146	5.37072759046539	5.67415244799475	5.7481410051471	-0.674220079732393	0.0464323645613575	0.221399406265128
Merged-chr1-64308727-4	chr1	64308639	64308839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-187350.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	6.5717352750868	6.16596531880207	6.91943689812006	7.02104131618554	6.47669159448362	6.31843298514747	6.63119396911338	6.45119143557428	-0.356234842520713	0.170571999315596	0.463756468269091
Merged-chr1-156939866-2	chr1	156939757	156939957	+	899.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159965)	promoter-TSS (NM_001159965)	-231.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	3.25549746929342	3.27666675995807	3.25593862676859	3.0985023651695	3.25868755238998	2.97751516229489	2.93415841730277	3.45914456077153	-0.153056506334124	0.793582163461203	0.920133178669972
Merged-chr18-12169574-3	chr18	12169502	12169702	+	678.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029623, intron 2 of 19)	intron (NM_029623, intron 2 of 19)	872.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	3.35101807945761	3.22317226060926	3.72776485492668	3.1199423900665	2.9472049029674	3.01107511997235	3.03495081644756	3.50385023477654	-0.851619148580129	0.170543736467365	0.463747304290085
Merged-chr18-35707944-4	chr18	35707839	35708039	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4795.0	NM_029669	76594.0	Mm.108596	NM_029669	ENSMUSG00000024350	Dnajc18	2700075B01Rik|AU041129	DnaJ heat shock protein family (Hsp40) member C18	protein-coding	5.26418494973556	5.5338785124071	5.26508091449639	5.53184679559556	5.25749768665719	5.09017441401117	5.14335709381773	5.35113082493033	-0.363007917231377	0.216006459289576	0.52240905990201
Merged-chr6-115375853-2	chr6	115375765	115375965	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001308354, intron 1 of 7)	Lx8b|LINE|L1	13516.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	5.5223983271179	5.31427802045766	4.96837597474638	5.51736123431368	5.57261860027389	5.22750168143852	5.62047588633437	5.69215299332975	0.316424546195183	0.298170756960801	0.610320314800708
Merged-chr1-105356582-4	chr1	105356487	105356687	+	791.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151538, exon 1 of 2)	non-coding (NR_151538, exon 1 of 2)	123.0	NM_178779	320311.0	Mm.389162	NM_178779	ENSMUSG00000047496	Rnf152	A930029B02Rik	ring finger protein 152	protein-coding	3.3504121907994	3.24082251470227	3.62454587631792	3.69842775455111	3.39431816908789	3.19353678392015	3.39762154975373	3.88739037739526	-0.0121656986294657	0.982902905124689	0.993870423643528
Merged-chr11-29810541-4	chr11	29810436	29810636	+	907.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 16 of 41)	intron (NM_146016, intron 16 of 41)	15132.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	3.96361957367291	4.01868795445719	3.74855245051471	3.93757015954653	4.25947943217929	3.98019936219209	4.29144238618581	4.104129666788	0.65447661590312	0.118616521733597	0.381036438328175
Merged-chr3-105686538-1	chr3	105686438	105686638	+	955.0	f1_c57bl6.idr	intron (NM_017397, intron 2 of 10)	intron (NM_017397, intron 2 of 10)	1033.0	NM_017397	53975.0	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	2.96181584318103	3.04905394709359	2.90072510119528	2.53199562902487	2.7731302060398	3.19057652549421	2.89007558788954	2.76728854540102	0.187661679571576	0.776918138596581	0.913015118902433
Merged-chr5-32937110-4	chr5	32936956	32937156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360014, intron 24 of 40)	intron (NM_001360014, intron 24 of 40)	73335.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	5.44368273868513	5.22039652891797	5.75691385295521	5.90169848693227	5.3904398523536	5.46628299464866	5.44640474930499	5.90434763775252	-0.0951992836089169	0.761754163238447	0.90664336139973
Merged-chr11-103965760-3	chr11	103965680	103965880	+	884.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304574)	promoter-TSS (NM_001304574)	-945.0	NM_001304574	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	3.29525386881839	3.38463899093166	3.16658192845094	3.1935607086004	3.3440758412099	3.41017839773094	3.60471864500723	3.79626374015417	0.987239894116175	0.0588394809651785	0.255374110708563
Merged-chr6-72938089-4	chr6	72937979	72938179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20153.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	5.96132148280434	6.32443042233384	5.93858347308605	6.02974116803794	6.60730156561387	6.22999995718331	6.24204351779376	6.25116724527359	0.425014604023374	0.0818007551221727	0.310417228173009
Merged-chr4-155848079-2	chr4	155847979	155848179	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356381, intron 1 of 15)	intron (NM_001356381, intron 1 of 15)	677.0	NM_001356381	13542.0	Mm.3400	NM_010091	ENSMUSG00000029071	Dvl1	Dvl|mKIAA4029	dishevelled segment polarity protein 1	protein-coding	3.50144583496471	3.20837320857285	3.92184544094827	3.50463827952729	3.76040743629351	3.62084169708006	3.76333476435581	4.23397261173801	0.921151913664706	0.0834171077137579	0.313908505787156
Merged-chr2-4493339-4	chr2	4493218	4493418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 4 of 23)	intron (NM_001177843, intron 4 of 23)	-66436.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	5.27907341804119	5.47767277319956	5.13937985081599	5.58337907891099	5.68873289817712	5.69697063282986	5.87022145556522	5.64916515049675	0.552655159376052	0.0497091936044985	0.230826557092361
Merged-chr11-20469441-4	chr11	20469354	20469554	+	865.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73799.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	4.41649719683257	4.25926253538675	3.84678363507421	4.06193175607805	4.27426321432885	4.38073712036622	4.27695487606796	4.06350593543247	0.238688419263481	0.567361841668598	0.808229609203301
Merged-chr9-123985094-3	chr9	123984992	123985192	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-6684.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	4.82246377826215	4.70052825414317	4.82327033085373	5.00615543857909	4.44913081849363	4.27923902425976	4.4418609533143	5.07233916228539	-0.533386818853202	0.169694937966446	0.462378593175119
Merged-chr4-9621382-3	chr4	9621328	9621528	+	898.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133723, exon 5 of 5)	3' UTR (NM_133723, exon 5 of 5)	22289.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	3.74348874782228	3.08963685088203	3.47475249146121	3.72883275655458	2.96775833978881	2.87143243271816	3.12185965865558	3.13102291604683	-2.0219712069943	0.0016407545179325	0.0200550762499156
Merged-chr15-39608854-5	chr15	39608710	39608910	+	988.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053271, intron 21 of 26)	Lx2A|LINE|L1	-50701.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	4.3174017214035	4.36310359056829	4.52530593941589	4.19541109437746	4.23614315554291	4.49120674807669	4.5039771005563	4.35954687917162	0.123002647575872	0.747440904406881	0.900560236507876
Merged-chr8-11549862-4	chr8	11549782	11549982	+	883.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359137, intron 2 of 14)	intron (NM_001359137, intron 2 of 14)	889.0	NM_024248	71941.0	Mm.196576	NM_024248	ENSMUSG00000056228	Cars2	2310051N18Rik|2410044A07Rik|D530030H10Rik|cysRS	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	4.27635340543313	4.28170936641981	3.86885938870052	3.95637646289669	4.25200286702008	4.31317220775993	4.52947789042125	4.39924554421044	0.674847691626857	0.0962901333588095	0.340048212247575
Merged-chr17-31073978-3	chr17	31073856	31074056	+	930.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	16262.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	3.38972552392039	3.85646842694736	3.75752655402114	3.82875933850176	3.33321333107557	3.30688844983446	3.18534262141135	3.55860935328369	-1.26482777551608	0.0193364950929041	0.125077461306599
Merged-chr16-96081541-4	chr16	96081426	96081626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145125, intron 4 of 41)	intron (NM_145125, intron 4 of 41)	902.0	NM_001103179	93871.0	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	7.13741009727425	7.43040721875682	6.82573662788291	6.90295586759065	7.45651715986706	6.97403006804724	7.14793653072105	7.29568844090321	0.197240590659518	0.378637888000102	0.681198988427369
Merged-chr16-22265426-4	chr16	22265329	22265529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330555, intron 1 of 9)	CpG	576.0	NM_001330554	20462.0	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	6.63040361415618	6.58964277513352	6.70874268179265	6.21723353608297	6.96752903674967	6.95792221931381	6.7883968597089	7.17260891224916	0.635358705867807	0.00424204943817105	0.0419951094519579
Merged-chr10-81135256-6	chr10	81135142	81135342	+	918.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GAAA)n|Simple_repeat|Simple_repeat	-1029.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	3.9096942523323	3.759655034957	3.80383214101761	3.62111114296124	4.13458934759853	4.08389710196337	4.16575247333331	4.18255330922351	1.04594022369835	0.0129395469498524	0.0947165788094964
Merged-chr10-93803491-3	chr10	93803415	93803615	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-28040.0	NM_001206851	327799.0	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	3.45189032338094	3.26683849083935	3.66321367040948	2.80303903936888	4.70769173883739	4.50708718111942	4.65633821084074	4.58259287531779	4.13888658937323	3.27581283408268e-14	4.69559846111898e-12
Merged-chr5-135962641-4	chr5	135962529	135962729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160366, intron 9 of 10)	CpG	11847.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	8.88139160034113	9.24925395855829	9.09238495636088	8.61802686786049	9.15451656774377	9.42697946653695	9.32281978598543	9.04278294415695	0.328942058155826	0.0765718006844699	0.299023657262297
Merged-chr6-33859791-4	chr6	33859679	33859879	+	930.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 13 of 17)	MLT1J|LTR|ERVL-MaLR	-169669.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	4.27300210393814	4.18807483136732	4.53493946391598	4.40787802401263	4.4155682743052	4.62578517147427	4.55218660928495	4.6447870479369	0.44944435277887	0.22467253462147	0.533198359017809
Merged-chr15-76332910-3	chr15	76332812	76333012	+	831.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010331, exon 6 of 12)	exon (NM_010331, exon 6 of 12)	1618.0	NM_010331	14731.0	Mm.5903	NM_010331	ENSMUSG00000022561	Gpaa1	C80044|mGAA1	GPI anchor attachment protein 1	protein-coding	3.31188134424931	3.61034243448167	3.43993195051141	3.50348326593814	3.74919956325387	4.01954714348679	3.64821716981486	3.49765965101326	0.828661672450253	0.0961556416422212	0.339783667599249
Merged-chr2-174330376-1	chr2	174330276	174330476	+	1000.0	f0_balb.idr	exon (NM_001310083, exon 2 of 13)	exon (NM_001310083, exon 2 of 13)	287.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	4.86279573444246	5.25710248863792	5.47104967390749	4.83064263755379	5.0407724449237	5.07817772663017	4.91559802178016	4.97208957841112	-0.225260210449983	0.507930509015089	0.773146987545967
Merged-chr7-116336371-4	chr7	116336259	116336459	+	961.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011083)	TTS (NM_011083)	-2169.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	4.828844154769	5.19647479884073	4.7466191569315	4.70349114263835	5.22644307613621	5.3523025692807	5.12335197240246	5.34755026134085	0.738717233349219	0.0209133272012936	0.131967173480574
Merged-chr7-35066119-4	chr7	35066031	35066231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9565.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	6.26786231799207	5.3952499400008	5.42497422514825	5.79696163554816	6.04899459620898	5.57333946956765	6.25303104610548	5.73509370192181	0.263350595735235	0.415847327246761	0.709930066326653
Merged-chr1-43303000-4	chr1	43302891	43303091	+	958.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106230.0	NM_001289533	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	4.62191006683064	4.34170266513725	4.66693456734054	4.64708776846476	5.18918973754835	5.30953538117022	5.49560846350126	5.07161614129525	1.36035506098718	4.27708478988749e-05	0.000987475245732733
Merged-chr5-88573492-4	chr5	88573406	88573606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289774, intron 1 of 17)	intron (NM_001289774, intron 1 of 17)	8466.0	NM_001289775	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	7.59419777472102	7.8055086707819	7.81841364299253	7.81066643376777	7.36239746018778	7.66365252413965	7.32997439277265	7.31888678029414	-0.450908275069284	0.0121264384841158	0.0906191879119036
Merged-chr2-156475622-6	chr2	156475498	156475698	+	716.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001006664)	promoter-TSS (NM_001006664)	64.0	NM_001006664	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	4.28594019086913	4.20451072679371	4.07164296423551	4.05193536629407	3.90329577829007	4.09718219931435	3.79875106097769	4.02151388423972	-0.522917392302325	0.217679350533839	0.524640181886301
Merged-chr5-134187558-4	chr5	134187449	134187649	+	802.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359852, intron 1 of 14)	B3|SINE|B2	3511.0	NM_053266	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	4.01235239225038	4.28868752554342	3.80170376126861	3.79897216597077	4.35616405524404	4.08617012647414	3.99588689439968	3.96093844706262	0.348239286696812	0.436005640300109	0.724953319104812
Merged-chr7-64392697-4	chr7	64392592	64392792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026483)	promoter-TSS (NM_026483)	70.0	NM_001355124	73724.0	Mm.10093	NM_028626	ENSMUSG00000033429	Mcee	1110007A04Rik	methylmalonyl CoA epimerase	protein-coding	8.60249351795679	8.61771472310719	8.37827331833676	8.63608802885109	8.65578964927128	8.47063975527882	8.90994078588991	8.56111913708439	0.120040821647149	0.471137311579109	0.749722394386081
Merged-chr3-153406398-4	chr3	153406315	153406515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	-107766.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	6.4783942855774	6.50647022180077	7.01337369150482	7.20390601230939	6.32152510185088	6.38685756011472	6.63974928743621	6.59178013907866	-0.522944841318639	0.041463278347023	0.206212597083758
Merged-chr7-28962420-4	chr7	28962321	28962521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360548)	promoter-TSS (NM_001360548)	-89.0	NM_001360548	60595.0	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	7.81945411039725	8.01910098883901	7.78232736609603	7.73277794809187	7.908265657485	7.9201130300536	7.87032400780767	7.43857745201187	-0.051277807250056	0.783867864365022	0.915840917490605
Merged-chr9-94538509-5	chr9	94538442	94538642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033145)	promoter-TSS (NM_001033145)	-461.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	8.39726229113432	8.4205670768917	8.78327595852934	8.56080494746798	8.19233620423259	8.47708400363927	8.50419656265495	8.43995553013145	-0.182217620716249	0.283562356664838	0.595670507139694
Merged-chr17-73107403-4	chr17	73107295	73107495	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177968)	promoter-TSS (NM_001177968)	-590.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	4.63340160607622	4.39394459641366	4.0864624025842	4.24542746575343	4.10175413309573	4.15828970727112	4.61152069017743	4.27853361138738	-0.120565586384525	0.772321721678084	0.910844149970579
Merged-chr15-99126479-7	chr15	99126362	99126562	+	979.761902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139140)	promoter-TSS (NM_139140)	-383.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	4.6076601951706	4.54417897537379	4.34419491769126	4.09897583699496	4.69681912552772	5.09349381598309	4.37252559046544	4.88950919142973	0.840752093522847	0.0329523048309401	0.178176246244416
Merged-chr8-10910657-4	chr8	10910570	10910770	+	972.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10748.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	6.02937679593013	5.66475393864317	6.16207218527815	6.40534503260542	5.41371787545523	5.08482849333931	5.63595076668593	5.66074287920638	-1.04211037088042	0.000618068416188369	0.00915257392868207
Merged-chr4-149901718-3	chr4	149901615	149901815	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029035, intron 2 of 2)	intron (NM_029035, intron 2 of 2)	53291.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	3.3661355834584	3.0339099987041	2.99538469833218	3.23214919685991	3.15334681698915	3.30671444191455	3.59380901004424	3.41735896052493	0.746155666537056	0.185221195236928	0.483068485869903
Merged-chr3-96501591-4	chr3	96501498	96501698	+	993.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CGTG)n|Simple_repeat|Simple_repeat	-23587.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	4.89188980457658	4.67125091867385	4.50753008550319	4.50578757199355	4.90670036206958	4.59431364351517	4.34687378788785	5.18335363769647	0.322581119008217	0.405818958435558	0.702456276834042
Merged-chr6-71198109-4	chr6	71198022	71198222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1757.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	5.93492231989097	6.11496037114823	6.0047503823125	6.36512058402594	6.23450323950397	6.06512564891887	6.12063027862211	6.16736729165712	0.024630863817797	0.919408265365217	0.970295657569474
Merged-chr10-115330001-2	chr10	115329901	115330101	+	882.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-14410.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	3.02385808498798	3.16580472700559	3.21865464236311	2.89701782141504	3.41762430930234	3.50555673961905	3.26612571480548	3.85433232765581	1.76589354308702	0.00185250138071314	0.0220463460588164
Merged-chr5-113220889-3	chr5	113220749	113220949	+	636.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6060.0	NM_001033428	333048.0	Mm.332586	NM_001033428	ENSMUSG00000066964	Tmem211	Gm854	transmembrane protein 211	protein-coding	2.59671307247676	2.5048308069583	2.98407553693075	2.36737430669204	2.17652610046837	2.41749621490243	2.22470124916109	2.77587778763061	-1.13400627846632	0.178397064464623	0.474235309662659
Merged-chr7-83659603-4	chr7	83659515	83659715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 12 of 18)	intron (NM_001360088, intron 12 of 18)	-4120.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	7.72028485735894	8.10343206984455	8.03435238933893	7.73025705395058	7.95529384245926	8.09026433507946	7.68397668344419	7.55800646220935	-0.0843022675794313	0.672166527701298	0.865064843062374
Merged-chr2-24385839-3	chr2	24385732	24385932	+	828.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355232)	promoter-TSS (NM_001355232)	500.0	NM_177611	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	3.40603826920091	3.34618144975764	3.5231165375499	3.42862177146294	3.56281443933078	3.89604046966232	3.61502431121388	3.62807574052724	0.805183216113998	0.0971072399773212	0.341417447979538
Merged-chr11-3194219-4	chr11	3194120	3194320	+	972.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030207)	promoter-TSS (NM_030207)	-757.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.4448822687864	4.19582808284535	4.8483053223014	4.58375462236655	4.77156912102661	4.91121138934544	4.49787806379805	5.22028812016418	0.060053439364126	0.892636325370168	0.959816321034536
Merged-chr6-81923698-4	chr6	81923610	81923810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177884)	promoter-TSS (NM_177884)	41.0	NM_177884	330361.0	Mm.474487	NM_177884	ENSMUSG00000035125	Gcfc2	A130099G21|AW146020|GCF2|Tcf9	GC-rich sequence DNA binding factor 2	protein-coding	5.9903372862455	6.37245405001864	6.34615713469266	6.38737790740748	6.03047949286797	6.27619423249874	5.71190853984762	6.09600325444482	-0.384964999638893	0.125826133443152	0.393937908614477
Merged-chr12-40223406-4	chr12	40223309	40223509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035459)	promoter-TSS (NR_035459)	45.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	9.70042578520183	9.64668623770682	9.65012011396442	9.59712225481603	9.67495121430937	9.82378563139403	9.97105214275664	9.35942862404687	0.0957466658683948	0.561806085861016	0.805159621706194
Merged-chr1-182368526-3	chr1	182368426	182368626	+	689.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26920.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	3.46297911170015	3.28402827946819	3.41115695026354	3.68380022024717	2.9308214972782	3.28929347963222	3.16701779916733	3.35475828085671	-1.07460742349576	0.0620571487005838	0.263477303125186
Merged-chr10-43479981-4	chr10	43479882	43480082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199028, intron 1 of 3)	CpG	842.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	8.10626572384425	8.39175426743019	8.26234441734152	8.22703556700929	8.00874860929304	8.00991559320836	8.0627283229947	7.91092011217044	-0.323069397465396	0.0416612919187157	0.206691644296975
Merged-chr10-83184117-4	chr10	83184019	83184219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021439, intron 2 of 2)	MIR|SINE|MIR	153698.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	5.7153059466383	5.54981015511176	5.84786380375239	5.86313423025963	5.27861417554334	4.90619421151676	5.21941685437782	5.39895198914142	-0.9362126191282	0.0013335109699571	0.0169926683062299
Merged-chr19-43667278-4	chr19	43667170	43667370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145156, intron 1 of 3)	intron (NM_145156, intron 1 of 3)	7611.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	7.05080297374072	6.8694975723439	6.66053152296561	6.95906789298806	6.75444827463944	7.02756474473119	6.84330042856212	6.60740386214682	-0.11775589933275	0.574776570275761	0.812568700384484
Merged-chr12-111944075-4	chr12	111943996	111944196	+	890.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029464, intron 1 of 2)	intron (NR_029464, intron 1 of 2)	386.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	3.83579663244229	3.93182186088134	4.18801715320314	3.75285988323943	4.37332778471299	4.31474073510212	4.07892567339864	4.27033007590642	0.89445975953357	0.0325323173569219	0.17662988689156
Merged-chr18-43374761-1	chr18	43374661	43374861	+	691.333313	f0_balb.idr	intron (NM_001291455, intron 1 of 13)	LTR33|LTR|ERVL	-1489.0	NM_001136086	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	2.57320511971351	2.73113230396901	3.00282615431883	2.6925986313114	2.10909120204202	2.22801276748973	2.28506441406649	2.20922908667637	-4.90831192139746	2.18826635264854e-05	0.000551553154090547
Merged-chr2-24311913-4	chr2	24311833	24312033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	X7A_LINE|LINE|CR1	20737.0	NM_153077	215274.0	Mm.218750	NM_153077	ENSMUSG00000046845	Il1f10	-	interleukin 1 family, member 10	protein-coding	6.14309438901867	5.77527261887297	6.10375338826556	6.23037859811595	6.13084197027212	5.90246091377807	6.24405241602826	6.30699163096837	0.114059648641895	0.64756094234444	0.851667779256884
Merged-chr15-77542041-3	chr15	77541932	77542132	+	803.9111330000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8717.0	NM_175391	108956.0	Mm.86391	NM_175391	ENSMUSG00000044309	Apol7c	2210421G13Rik	apolipoprotein L 7c	protein-coding	3.18312725291884	3.62764722698544	3.32596530443652	3.27426867757739	4.12114273465535	3.90446650773903	3.76561909857954	3.7800882649717	1.69572478131585	0.000753879710059866	0.0107342276219946
Merged-chr5-129959288-3	chr5	129959196	129959396	+	866.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001327, intron 1 of 1)	intron (NM_001001327, intron 1 of 1)	17187.0	NM_027121	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	3.91339726670045	3.34250239523489	3.32948694720614	3.8253844558128	3.45915213587654	3.69109678136129	3.8958263058268	3.51466620354159	0.0406276615310454	0.940067291592898	0.978404002753194
Merged-chr2-21111630-1	chr2	21111530	21111730	+	576.0	f0_balb.idr	Intergenic	Intergenic	93735.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	3.05146146828197	2.89326768690044	2.93682000177952	3.04447960390002	2.81354670383577	2.77373785558327	2.92650056037688	2.99417767288871	-0.479983351983405	0.426698108927879	0.718114737205691
Merged-chr10-40643455-4	chr10	40643351	40643551	+	941.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133568, intron 3 of 4)	MTC|LTR|ERVL-MaLR	13440.0	NR_133568	70503.0	Mm.252862	NM_027442	ENSMUSG00000063428	Ddo	5330420D20Rik|5730402C02Rik|AI467244	D-aspartate oxidase	protein-coding	4.83535421659022	5.28507826814994	4.30436932358108	4.05490943377215	5.2336260831709	5.39034349989529	5.61256646861316	5.35297447345149	1.31468848011859	0.00180293378880658	0.0215635211358617
Merged-chr9-56265670-4	chr9	56265589	56265789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 3 of 6)	Lx7|LINE|L1	-104619.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	5.46898136078814	5.59204877093333	5.66028900850759	5.81360801897071	5.54940410277797	5.58648610272102	5.68087762089683	5.63081471425157	-0.0762794336628076	0.774347034978565	0.911799562721906
Merged-chr2-103796556-4	chr2	103796510	103796710	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111292, intron 1 of 16)	CpG	468.0	NM_001111290	53872.0	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	5.01269889120299	4.85090831200315	4.9045377628486	4.60479818281399	5.32983628362559	5.188414294633	5.26706304278554	5.31759338090511	0.866521630673317	0.00515024561755722	0.0485613104798126
Merged-chr12-24980333-8	chr12	24980217	24980417	+	812.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081378, intron 1 of 31)	(CAGG)n|Simple_repeat|Simple_repeat	5385.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	2.94012371267375	3.37901383204774	3.09060461485328	3.21577603373762	3.81106678118735	3.63352662516564	3.44867975219887	3.61338092316264	1.58496471087706	0.00471132207904329	0.0454708060019284
Merged-chr16-8766386-4	chr16	8766303	8766503	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28061.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	5.61557819523286	5.30686677246953	5.1933583732583	5.73306988851262	5.33722517744767	5.40212920060445	4.99034295401571	5.28642529845478	-0.41163632129485	0.185593822909234	0.483549688674278
Merged-chr11-113766489-4	chr11	113766394	113766594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie8|DNA|hAT-Charlie	-14679.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	6.41605184073039	7.02142252306101	6.50566433839437	5.84700598584356	6.72358322643281	7.13525497835642	6.58602018708049	6.70551170461802	0.421213692807805	0.152927301513382	0.437419043569042
Merged-chr7-140078892-3	chr7	140078798	140078998	+	815.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026769, intron 1 of 5)	B3|SINE|B2	3403.0	NM_001190386	68566.0	Mm.44241	NM_026769	ENSMUSG00000025468	Caly	0710001P07Rik|1110004A22Rik|Calcyon|Drd1ip	calcyon neuron-specific vesicular protein	protein-coding	3.65595017622957	3.52549496738029	3.54104720185375	3.69578277527605	3.8153056097194	3.93264369036455	3.88934530401226	3.85807917970173	0.763027639987911	0.0930649272197572	0.333716294940811
Merged-chr2-165946365-4	chr2	165946255	165946455	+	987.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-46282.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	5.05542689424732	5.14404743837132	5.47963431068026	5.19187926553015	5.80819423451521	5.75928618373229	5.45200928196624	5.72624768055699	0.823910595415717	0.0035854664968557	0.0367578740860855
Merged-chr7-45921474-4	chr7	45921367	45921567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010129)	promoter-TSS (NM_010129)	-41.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	5.9310849082985	6.16900878245248	5.69757844112386	5.97531824373731	5.45157195842383	5.55715136569985	5.83628798875285	5.55781899487901	-0.585429138869555	0.0292844180517303	0.164582360245093
Merged-chr12-36308888-3	chr12	36308814	36309014	+	940.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5255.0	NM_025312	66042.0	Mm.43375	NM_025312	ENSMUSG00000036169	Sostdc1	0610006G05Rik|Sostl|USAG-1|Wise|ectodin	sclerostin domain containing 1	protein-coding	3.88724388798658	3.48102381731056	3.83364600373072	4.32894131078629	4.04967231563856	3.83895678662238	4.34749971847194	4.25189266346812	0.521727864615169	0.30849404089983	0.620834553909044
Merged-chr8-61591178-4	chr8	61591066	61591266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293774)	promoter-TSS (NM_001293774)	3.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	6.67158286807263	6.73712060899263	7.2323147418912	6.97014924836596	6.40727174082455	6.58417587140025	6.03748566778051	6.47356140030204	-0.766684671321444	0.00142274993828508	0.017895373362289
Merged-chr13-8995392-5	chr13	8995298	8995498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027000, intron 1 of 16)	intron (NM_027000, intron 1 of 16)	614.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	4.76600253268915	4.72086763385995	4.41927061135429	4.65488670968205	4.9052418313774	4.9777131870923	4.66635077324139	5.26042267800245	0.651802610143991	0.0616798498383072	0.262743301106329
Merged-chr2-155134226-6	chr2	155134095	155134295	+	829.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243712, intron 1 of 25)	intron (NM_001243712, intron 1 of 25)	714.0	NM_008395	16396.0	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	3.31154336864656	3.77733580999367	3.64928231359446	3.25168696577364	3.44666244314152	3.60811227108426	3.3624108156273	3.64708277657654	0.0295374444398631	0.955638119700415	0.98428084377376
Merged-chr12-64965648-4	chr12	64965556	64965756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025707)	promoter-TSS (NM_025707)	-86.0	NM_177805	328108.0	Mm.138465	NM_177805	ENSMUSG00000035614	Togaram1	A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding	9.15787894507851	9.16691298986708	9.28370248358601	9.45931012238818	9.10304791408406	9.2024296175857	9.29143672482738	8.86400157618178	-0.187366416564533	0.248586229562493	0.55976334179148
Merged-chr3-95818817-4	chr3	95818657	95818857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081293, exon 1 of 11)	5' UTR (NM_001081293, exon 1 of 11)	196.0	NM_001081293	75137.0	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	4.70557984431332	4.65776720591697	4.21599950016262	4.31412692192048	4.76715630030454	4.7634121419801	4.78958391730075	4.73973950603273	0.61903068163296	0.0862685532822271	0.320185074255691
Merged-chr4-133814839-2	chr4	133814747	133814947	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59884.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	4.31237374538387	4.62735770402217	4.07935374099992	3.78377364375828	4.04919078929371	4.44259363672177	4.01050111772736	4.47053436141863	0.0577068402468175	0.901317583487393	0.963342914941175
Merged-chr1-135399682-4	chr1	135399579	135399779	+	951.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357578, intron 15 of 24)	intron (NM_001357578, intron 15 of 24)	-24616.0	NM_175259	77552.0	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	4.59128777268049	4.50204474368325	4.84752542789024	4.94524067593063	4.6239200876697	4.68290420308778	4.57084711825411	4.21771183929232	-0.449434994802067	0.23381033711024	0.543501690545507
Merged-chr9-14758787-4	chr9	14758685	14758885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029306, intron 3 of 3)	intron (NM_029306, intron 3 of 3)	-6663.0	NM_010242	14345.0	Mm.63450	NM_010242	ENSMUSG00000049307	Fut4	AI451562|CD15|FAL|FucT-IV|LeX|SSEA-1|Ssea1	fucosyltransferase 4	protein-coding	6.6943601272151	6.87823026292825	6.83973125210612	6.99591532527943	6.52054974778865	6.65752878436625	6.98178846696763	6.90116025066457	-0.132359477383096	0.539417976636516	0.792185453341103
Merged-chr7-134690388-4	chr7	134690299	134690499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033420, intron 1 of 51)	intron (NM_001033420, intron 1 of 51)	19712.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	5.44389796420954	5.66593738616822	5.47399507353346	5.2516971290052	5.68470921130338	5.90642493035848	5.60759631767168	5.49864524997218	0.38605313418454	0.167238023742657	0.45877501414339
Merged-chr11-54729534-4	chr11	54729446	54729646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 3 of 5)	ORR1C1|LTR|ERVL-MaLR	58157.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	6.183025283447	6.71925446928052	6.22436299691446	6.23745243528864	6.29855522285487	6.31957125308387	6.17267374611403	6.45399814012589	-0.0688519307694154	0.77694573623388	0.913015118902433
Merged-chr15-79524862-4	chr15	79524773	79524973	+	973.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134090, exon 3 of 5)	exon (NM_134090, exon 3 of 5)	8044.0	NM_152806	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	4.15328097803095	4.55929782116635	4.42600840927998	4.24091203012919	4.58448018303695	4.67450437602006	4.03278104851171	4.04672504639072	0.0509661110238507	0.905704352410829	0.964961233688336
Merged-chr7-16782627-4	chr7	16782524	16782724	+	887.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009201, intron 1 of 8)	intron (NM_009201, intron 1 of 8)	1278.0	NM_009201	20514.0	Mm.1056	NM_009201	ENSMUSG00000001918	Slc1a5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding	4.25596859155915	3.92100086398115	3.98604559713847	4.19562489697819	4.11301987204956	4.00256500453805	4.01830138145514	4.08031095235014	-0.119577447373952	0.774511359823655	0.911870322392576
Merged-chr12-85575633-4	chr12	85575531	85575731	+	841.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23474.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	4.4014583762639	4.49614328756629	4.70009052657236	4.95516442829569	4.77775148971755	4.43248048443432	4.63978457083362	4.99904498865665	0.120650434183365	0.75360532304181	0.902798885097597
Merged-chr5-20864762-4	chr5	20864653	20864853	+	984.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 1 of 17)	intron (NM_172992, intron 1 of 17)	17371.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	5.6978640242332	5.94520759270292	5.1602183947918	5.63982513410751	5.80427779283099	5.57451127582972	5.82897040710572	5.11916259065239	-0.0441756513123162	0.89148032994785	0.959385213525176
Merged-chr1-172078158-1	chr1	172078058	172078258	+	696.0	f0_balb.idr	intron (NM_021607, intron 2 of 16)	intron (NM_021607, intron 2 of 16)	-4371.0	NM_009938	12847.0	Mm.30041	NM_009938	ENSMUSG00000026553	Copa	AU040324|xenin	coatomer protein complex subunit alpha	protein-coding	3.26021665431005	3.1275793608908	3.26071923858379	3.24439333940126	2.73738434744984	2.65800444752945	2.84666951834981	2.78471152252258	-2.24014535897554	0.000944642484305953	0.0128538916823578
Merged-chr7-46790866-4	chr7	46790757	46790957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005247, intron 2 of 22)	intron (NM_001005247, intron 2 of 22)	5024.0	NM_001005248	246694.0	Mm.379442	NM_178742	ENSMUSG00000014418	Hps5	AI646796|AL022647|C85120|haze|hz|maroon|mr|ru-2|ru2	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	protein-coding	5.61600914979204	5.30815388460097	5.64249105571436	5.87133390343165	5.52085872233479	5.47391358419584	5.50952023760891	5.71187923999548	-0.143461458112407	0.615042421743692	0.834265927342435
Merged-chr13-23534926-4	chr13	23534827	23535027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145073)	promoter-TSS (NM_145073)	-491.0	NM_145073	97908.0	Mm.261657	NM_145073	ENSMUSG00000099517	Hist1h3g	H3.1-221|M32460	histone cluster 1, H3g	protein-coding	4.55851137656079	4.16679023555419	4.02822729917627	4.46131517588777	4.81737548882698	4.73158215677408	4.90897817092938	4.29343003207445	0.845686347871488	0.0369211288204764	0.191420280305389
Merged-chr5-43847725-4	chr5	43847636	43847836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21073.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	7.06041955246296	6.78188867359705	6.99414478538528	6.95264361411022	6.12754299110015	6.55780722704928	6.41967766211723	6.03113369816161	-0.952112658505089	2.51858768102667e-05	0.000623332936536151
Merged-chr15-38710971-4	chr15	38710860	38711060	+	952.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17556.0	NR_131206	105463124.0	Mm.432448	NR_131206	ENSMUSG00000115620	Gm45924	Borg	predicted gene, 45924	ncRNA	5.24941363824463	5.04214908515904	5.93018080951759	6.01369387575386	5.38775611470816	5.0401784364304	5.83772486142312	6.00415037421844	-0.022011188148653	0.95442467384698	0.983764634562976
Merged-chr13-23577105-7	chr13	23576906	23577106	+	887.305969	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178204)	TTS (NM_178204)	1243.0	NM_178204	319149.0	Mm.347699	NM_178204	ENSMUSG00000099583	Hist1h3d	H3-b	histone cluster 1, H3d	protein-coding	3.64401046524678	3.40822999245302	3.58948303513555	3.3196764198681	3.62371803674994	3.86903706265818	3.7318989222333	3.97257225615759	0.993060295869992	0.0391474858085182	0.198991565547705
Merged-chr2-52539432-3	chr2	52539340	52539540	+	698.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	19171.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	3.23313514297619	3.27778513718098	3.7321899817688	3.74884321031074	3.40287998076098	2.99643090488302	3.16049509686086	2.96317470730697	-1.36181958038577	0.0319414499612177	0.174540186303509
Merged-chr5-146906001-3	chr5	146905906	146906106	+	712.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42651.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	3.11016068517709	3.45790256072662	3.41065426756607	3.23352714906993	3.12514469816604	3.28832123173357	3.34273214782405	3.60644150548459	0.144322428186521	0.793084275918026	0.919830957220335
Merged-chr13-38028135-3	chr13	38028031	38028231	+	944.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027724, exon 3 of 13)	exon (NM_027724, exon 3 of 13)	8806.0	NM_027724	71213.0	Mm.314688	NM_027724	ENSMUSG00000044566	Cage1	4933427I01Rik|Ctag3	cancer antigen 1	protein-coding	3.41477428869929	3.21735923770819	3.41522044982766	2.6048645676838	4.93037950356836	4.32271250047353	5.17888456036396	5.3944676371097	6.24378919568453	2.20001936814399e-20	7.79080490572743e-18
Merged-chr11-102408024-4	chr11	102407928	102408128	+	974.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026542)	promoter-TSS (NM_026542)	-511.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	4.51167341661912	4.87072847292805	4.55628883689149	4.46439470664964	4.82845951909465	4.68915417867237	4.69616875702989	5.04757612103174	0.464105177613194	0.188256636762093	0.486844904377598
Merged-chr5-143464566-4	chr5	143464462	143464662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144915)	promoter-TSS (NM_144915)	69.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	7.5376153098474	7.8258990163737	7.19810870659532	7.28143123500445	7.44057609260029	7.72511863314124	7.63011212669382	7.67860400080056	0.18136696864637	0.380322358414938	0.682748175274071
Merged-chr13-51696701-3	chr13	51696592	51696792	+	760.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44984.0	NM_029279	75420.0	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	4.07387380165869	4.19477085763317	4.07449401672154	4.15378919878355	3.83755277349411	3.94682372818013	3.69882880280013	3.92915050992179	-0.757267509878743	0.0781722511147025	0.302437045599886
Merged-chr1-92976638-8	chr1	92976494	92976694	+	917.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271766, intron 1 of 1)	intron (NM_001271766, intron 1 of 1)	1247.0	NM_001271766	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	3.70587945296538	3.57349233745487	3.95620492253544	3.7107634808948	3.90912418234598	3.93247250608823	3.79643764735192	3.90762268322538	0.431765020704945	0.334898456307512	0.64529103101308
Merged-chr3-87919516-4	chr3	87919397	87919597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026591)	promoter-TSS (NM_026591)	-47.0	NM_026591	67707.0	Mm.393802	NM_026591	ENSMUSG00000019710	Mrpl24	2010005E08Rik|2810470K06Rik|6720473G22Rik|AA407670	mitochondrial ribosomal protein L24	protein-coding	7.22738736300688	7.41425636432066	7.11354398876256	7.06802745758487	7.37574940895352	7.44870852369229	7.1703706536011	7.32893567904555	0.172411090525409	0.363857178162994	0.668861601830111
Merged-chr8-126573333-4	chr8	126573210	126573410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	20126.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.02431662321234	4.91450012362648	4.73087552563936	5.04131537271983	4.83873218475453	5.13023992390373	4.93382653640899	4.98849759317854	0.0524776740055811	0.870389949112121	0.951344955435208
Merged-chr2-164924606-4	chr2	164924435	164924635	+	883.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12785.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	3.42944873765733	3.39219446687699	3.31726338245905	2.95905247422161	3.39819749261656	3.54613068134947	3.3615175305989	3.37295917624373	0.518575591529931	0.342738518190776	0.6516462545027
Merged-chr15-67899569-4	chr15	67899504	67899704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	359252.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	5.86387300846098	6.01362601471527	5.77124127961472	5.52264296387103	5.79385017070118	6.1042981801563	5.41302229237982	5.66606562481365	-0.0457278389094129	0.874294317196657	0.952841261958902
Merged-chr2-124909956-4	chr2	124909857	124910057	+	938.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-158170.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	4.9058154731863	5.19284020917379	4.97656212537073	5.46092621898571	4.34543101544674	4.84946015139849	4.69130622084696	4.9387244079416	-0.914244502019062	0.0124131122698274	0.0919888514579952
Merged-chr7-132931110-4	chr7	132931016	132931216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362198)	promoter-TSS (NM_001362198)	-26.0	NM_207302	360216.0	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	8.21735452868245	8.35330195772649	8.12604224136173	8.1957599092077	8.43104661519838	8.58392028571124	8.46617809118166	8.15851081254201	0.245074329655866	0.138778197022631	0.414381792154761
Merged-chr18-64989653-4	chr18	64989566	64989766	+	956.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-33861.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	5.18750978437704	5.46581124807052	4.90666976987541	4.23449857042098	5.50292896912224	5.45385453490921	5.25327212624091	5.1527819525084	0.607129787697119	0.124433417842713	0.391605890809929
Merged-chr9-108854603-4	chr9	108854518	108854718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134420, exon 1 of 18)	5' UTR (NM_134420, exon 1 of 18)	575.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	5.87990715830086	5.82035452410882	5.81027272591307	5.53046751181641	6.14507654110724	6.05570042689181	5.73167286338284	5.94361197252251	0.376722984938564	0.147338896484998	0.428320821437847
Merged-chr18-36711191-3	chr18	36711072	36711272	+	755.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B3|LTR|ERVK	-15247.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	3.95921589292032	3.46668615803199	3.55265324900843	3.61203438528312	3.39099415519915	3.22516945642404	3.36960084762284	3.55064421687087	-0.894904010757919	0.0909770071497989	0.32961683762168
Merged-chr16-45148768-4	chr16	45148651	45148851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028756, intron 4 of 6)	intron (NM_028756, intron 4 of 6)	9922.0	NM_001356453	74102.0	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	6.41203056951386	6.42886674108289	6.4783702289411	6.73728960066302	5.87194540188857	5.81034083822737	5.82422340547208	6.37466526567141	-0.822038830889017	0.0012151314269576	0.0157187120247749
Merged-chr7-34196607-4	chr7	34196502	34196702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360710)	promoter-TSS (NM_001360710)	68.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	6.34737635388332	6.47835763514888	6.60872952289298	6.49607073130572	6.31637968014589	6.15126100719484	6.20323754052612	6.25025045454772	-0.372497769544512	0.0875309822283272	0.322616393125005
Merged-chr14-67184199-4	chr14	67184092	67184292	+	918.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49100.0	NM_010095	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	4.6819127938183	4.79363966826627	4.83083978612477	4.7529442622004	4.27922905840856	4.64771237332198	4.69906080586959	5.02125051522899	-0.183385422508364	0.620252708882987	0.837090073483289
Merged-chr18-39876020-4	chr18	39875943	39876143	+	895.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102546.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	4.04642739696134	3.83772921794471	3.72209344944061	3.49519021455381	4.3690820909099	4.43678494738265	4.32443954132989	3.89215470141497	1.32941462229665	0.00338872788709447	0.0351305363057817
Merged-chr8-67986704-3	chr8	67986606	67986806	+	889.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12132.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	3.24468204632504	3.76773569692126	3.44060345736242	3.41988949448957	3.77263859620642	3.78200313222623	3.74547688881273	3.60920635267053	0.775859280942684	0.1190426690612	0.381733483853996
Merged-chr7-128740526-4	chr7	128740428	128740628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145955)	promoter-TSS (NM_145955)	-99.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	7.01146608111525	6.82516359883643	6.50470805213607	6.92547228622666	6.84557699001896	7.11497001197045	6.91635607935289	6.51780197367314	0.0400985474214447	0.859877016932232	0.947052875550765
Merged-chr8-81767553-1	chr8	81767453	81767653	+	918.0	f0_c57.idr	intron (NM_001297593, intron 4 of 23)	intron (NM_001297593, intron 4 of 23)	424991.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	4.37039834430032	4.22759383908621	4.28054955812033	4.03884567549062	4.53987854542168	4.45589654407863	4.78575238790629	4.41124680545303	0.793853462474617	0.0368240547106867	0.191119892066653
Merged-chr2-150136691-4	chr2	150136588	150136788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181266)	promoter-TSS (NM_181266)	-10.0	NM_181266	104348.0	Mm.485851	NM_023266	ENSMUSG00000068134	Zfp120	AI315103|E030042N05Rik|F80|MZF31|Zfp844	zinc finger protein 120	protein-coding	8.21339037858499	8.1101354585523	8.25040577203769	8.3433397171728	8.41883522307301	8.33692407835727	8.69120482323941	8.4647229080346	0.315174412892377	0.0522322665906306	0.238002720930446
Merged-chr3-123797209-3	chr3	123797119	123797319	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2D|LTR|ERVL	-106367.0	NR_121616	83398.0	Mm.443908	NM_031186	ENSMUSG00000027977	Ndst3	4921531K01Rik|4930511P15Rik|N-HSST 3|NDST-3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	protein-coding	6.0062829176438	5.35066711107442	5.63783239031487	5.66108894227276	3.55250138941486	3.81167835521087	3.73632555033011	3.89937672003597	-5.71516285790879	1.13528745746342e-15	2.01517770410944e-13
Merged-chr17-17909596-3	chr17	17909498	17909698	+	946.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21774.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	3.58449907283582	3.71612294900194	4.04655285948129	3.99772414123964	4.19714455509451	3.87454386477457	3.68783834741379	3.95487289150547	0.264623663509832	0.580030808794626	0.81556313513578
Merged-chr6-87017117-3	chr6	87016994	87017194	+	868.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020045, intron 3 of 7)	B3A|SINE|B2	7258.0	NM_020045	56748.0	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	3.73547707724494	3.80377564274846	3.78134846728514	3.19757566323064	3.4965484296904	3.27917452928417	3.35178922497068	3.29940394174233	-0.94504922733882	0.0932653094530898	0.334047776458586
Merged-chr17-80172901-4	chr17	80172800	80173000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 4 of 6)	intron (NM_176963, intron 4 of 6)	34405.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	6.81707337343897	6.62033366078447	6.28878495801258	6.78763672156334	6.78295942951802	6.74152630350127	6.89911662562247	6.62440241588734	0.160023800547306	0.468149958325795	0.747508768533172
Merged-chr9-55252276-4	chr9	55252125	55252325	+	754.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	B2_Mm2|SINE|B2	31400.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	3.35715521659173	3.34014811059228	3.61878808600676	3.34442759601528	3.37629520300545	3.47118023573737	3.28671478300902	3.41239720697713	-0.0950190326167273	0.853140875477182	0.944691500997034
Merged-chr7-110630387-4	chr7	110630287	110630487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009627)	TTS (NM_009627)	2730.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	5.14036413335951	4.87779369400706	4.90095492235416	4.93004068746469	4.95567376762543	5.11345849103805	5.41733962369951	5.07361875531002	0.353009673420481	0.265634364864691	0.577313837051198
Merged-chr17-63873657-4	chr17	63873564	63873764	+	944.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	intron (NM_001037997, intron 1 of 18)	-4402.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	5.04053919030307	4.81217824486065	4.97713074273765	5.10005123991187	5.15610469892566	4.37306596928021	4.57499909553019	4.8346212050475	-0.408831560817542	0.274509780072909	0.58629134442973
Merged-chr12-83953909-4	chr12	83953807	83954007	+	938.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023633)	TTS (NM_023633)	3299.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	3.69877168953108	3.75825295543435	3.80936400174887	3.89509886285633	4.31335118885265	3.63190594680222	4.15465527167568	3.80722124736022	0.600735419024491	0.206096687217272	0.509986306255456
Merged-chr2-157036509-3	chr2	157036435	157036635	+	829.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 6 of 14)	MIR3|SINE|MIR	-29460.0	NM_025853	66934.0	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	3.55363170637139	3.71743519738515	3.34062373608646	3.3920276566406	3.33044883120644	3.39403398883044	3.14397815131565	3.15239447138388	-0.877613408064221	0.108679097950946	0.363945872173626
Merged-chr14-79503885-4	chr14	79503796	79503996	+	874.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	MTE2a|LTR|ERVL-MaLR	-11778.0	NM_001286412	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	4.13820848871199	4.14682032142692	4.48843767291434	4.755051865927	4.25066356647307	3.9836766183554	4.46730580139334	4.27868033873214	-0.39899983679657	0.358243053183481	0.664320653179664
Merged-chr2-162958465-4	chr2	162958334	162958534	+	738.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081338, intron 8 of 22)	intron (NM_001081338, intron 8 of 22)	14969.0	NM_001081338	241764.0	Mm.187086	NM_001081338	ENSMUSG00000035576	L3mbtl1	C630004G01|L3mbtl|mKIAA0681	L3MBTL1 histone methyl-lysine binding protein	protein-coding	3.25741593864835	3.2850254637588	3.62328780760235	3.76468024016858	3.71046986672505	3.56856692250489	3.80311827644868	3.90562631799016	0.72709885884653	0.171260641508729	0.464387093407612
Merged-chr12-55485953-4	chr12	55485843	55486043	+	944.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	6704.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	4.95252950014346	5.34735912312004	4.9178569398301	4.32559251802187	5.17054899266127	5.01983824774942	4.78233201941247	5.01808835365958	0.158027308725052	0.683797747438322	0.87046260876057
Merged-chr6-136718962-4	chr6	136718848	136719048	+	983.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145067, intron 18 of 25)	MER44B|DNA|TcMar-Tigger	-57055.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	4.79285064631644	4.8880513036736	5.05407346666366	5.20077751297252	5.11175670491782	5.04993865114677	5.12591940775114	5.34870901905633	0.288774321472112	0.365574142642079	0.670295715323899
Merged-chr5-4531255-1	chr5	4531155	4531355	+	1000.0	f0_c57.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	226961.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	4.48934007179865	3.91882255560823	3.9569153964791	4.59805651068262	4.41676772432004	4.19795108990608	4.61728708935054	4.83207227856334	0.563149912488389	0.215874466884167	0.522253031009044
Merged-chr7-75576393-4	chr7	75576291	75576491	+	991.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 3 of 36)	intron (NM_029332, intron 3 of 36)	120857.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	5.98085211671819	5.58354112855929	5.75129580668135	5.45000824531323	5.56085348480209	5.28540801532309	5.44084483743338	5.37487017493599	-0.452717086584226	0.119135645934144	0.38190374944411
Merged-chr15-74999890-2	chr15	74999787	74999987	+	618.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1856.0	NM_010738	110454.0	Mm.425949	NM_010738	ENSMUSG00000075602	Ly6a	Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP	lymphocyte antigen 6 complex, locus A	protein-coding	3.20601318916791	3.10430358733383	3.52342831791384	2.61320967271172	4.18266439804817	3.70255571475031	3.6157500405623	3.82326138964957	2.37880397307959	0.000243989461002571	0.00427862178977631
Merged-chr11-106778793-3	chr11	106778652	106778852	+	989.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_148430, exon 1 of 8)	non-coding (NR_148430, exon 1 of 8)	714.0	NM_001353435	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	4.251327417325	4.17065974421964	3.83067197783313	3.66793282447552	4.15868519335946	4.20663612107379	3.81554283807389	3.88264726411663	0.0997401304967123	0.831006223891973	0.935210473222975
Merged-chr2-180580506-1	chr2	180580406	180580606	+	714.400024	f0_balb.idr	promoter-TSS (NM_028479)	promoter-TSS (NM_028479)	-716.0	NM_028479	73247.0	Mm.426558	NM_028479	ENSMUSG00000027569	Mrgbp	1600027N09Rik|AW060503|C80444	MRG/MORF4L binding protein	protein-coding	3.59963869731625	3.69404058913703	3.74009979390101	3.58335075657547	3.20462270470062	3.31061023647402	3.18806275418298	3.19669999854413	-1.56420253810753	0.00372161442498476	0.0378483773619075
Merged-chr4-132337932-2	chr4	132337832	132338032	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133878, intron 3 of 9)	intron (NM_133878, intron 3 of 9)	7818.0	NM_001197082	100088.0	Mm.255045	NM_133878	ENSMUSG00000028896	Rcc1	4931417M11Rik|AI326872|Chc1	regulator of chromosome condensation 1	protein-coding	2.73479979735569	2.39129187260788	2.44866007566173	2.39023283090109	2.53481327253732	3.0301567052028	2.84636984290959	3.02208615053705	1.85619021240647	0.00832986352829706	0.0690852729187988
Merged-chr5-138848272-4	chr5	138848152	138848352	+	850.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28172.0	NM_001195128	384244.0	Mm.485002	NM_001195128	ENSMUSG00000094504	Gm5294	EG384244	predicted gene 5294	protein-coding	3.72584402138947	3.67121312239404	3.44249624959828	3.49064587494736	3.83048292441464	3.620695027626	3.76031765756919	3.95622232925649	0.664497842849013	0.15633917982589	0.442219656874513
Merged-chr8-122283554-4	chr8	122283425	122283625	+	944.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009569, intron 1 of 9)	intron (NM_009569, intron 1 of 9)	1384.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	4.83658406115578	4.621119253165	4.44257548127553	4.56510303641994	4.73718114252638	4.47687249426602	4.9415813324344	4.69068969878306	0.22599147224892	0.525209631537092	0.783229855070132
Merged-chr16-90810041-2	chr16	90809941	90810141	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029497, intron 1 of 38)	intron (NM_029497, intron 1 of 38)	372.0	NM_029497	207932.0	Mm.328688	NM_029497	ENSMUSG00000039929	Urb1	4921511H13Rik|5730405K23Rik|AA670781|AI645590|mKIAA0539	URB1 ribosome biogenesis 1 homolog (S. cerevisiae)	protein-coding	4.09988819905804	4.37363227411533	4.50153488498204	4.38716913479659	4.47168485556015	4.05782293265759	4.68873112058636	4.09812576890198	0.0281601710624277	0.946365038488049	0.980868358011675
Merged-chr2-32969586-4	chr2	32969488	32969688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	6287.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	6.70911863208759	6.68818055882989	6.82558222426202	7.10785274966276	6.83250926839526	6.62059994481259	6.73485234637754	6.93882776341138	-0.0982801222777126	0.649946362928035	0.853021044216188
Merged-chr16-85124071-4	chr16	85123964	85124164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	49643.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	6.38405677643598	6.28998707277514	6.69284032287769	7.09644349910078	6.24919761469503	6.05577122678402	6.88062403683029	6.50279376860852	-0.304338707703729	0.29664148024931	0.608578870807483
Merged-chr17-47737737-4	chr17	47737650	47737850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161723)	promoter-TSS (NM_001161723)	-181.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	6.54785582536217	6.52981435050031	7.00908318477124	6.48521976748536	6.52254490494954	6.67556533487935	6.51554784813781	6.47719000751812	-0.148496775063931	0.513786764646727	0.776645302351569
Merged-chr10-128805489-4	chr10	128805370	128805570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359824)	promoter-TSS (NM_001359824)	-84.0	NM_001359825	74330.0	Mm.296915	NM_028873	ENSMUSG00000025354	Dnajc14	5730551F12Rik|DNAJ|DRIP78|HDJ3|LIP6	DnaJ heat shock protein family (Hsp40) member C14	protein-coding	8.61923685780747	8.59984226765979	8.52774586796511	8.47238318570975	8.40743308395843	8.63606393343335	8.54488533273092	8.4529042370865	-0.0544533889401492	0.715818311848131	0.886371813543908
Merged-chr6-100100868-4	chr6	100100757	100100957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	186501.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	6.50871690488649	6.36268683239779	6.389650974759	6.6938463715686	6.4650571072951	6.58364471824421	6.32062903409142	6.48874456363917	-0.0632932245879921	0.774577327410509	0.911902738798422
Merged-chr10-80929204-4	chr10	80929126	80929326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008655)	promoter-TSS (NM_008655)	-865.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	5.29626095183212	4.88177565498606	5.32534476619838	4.70933238516972	5.40783423289509	5.11435761390529	5.02137619128382	5.23522621559035	0.283150052707074	0.405250380633439	0.702208404574409
Merged-chr7-88280808-2	chr7	88280708	88280908	+	971.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 1 of 6)	intron (NM_009982, intron 1 of 6)	2723.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	3.38288987085478	3.25692356806966	3.5344797843663	3.08423380256316	3.55987682740087	3.12465066109641	3.25937133988956	3.08240900049221	-0.134568394578797	0.816767719365594	0.929518098916358
Merged-chr11-69041793-4	chr11	69041693	69041893	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3844.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	5.42575406765486	5.67657567042382	5.02170953423281	5.09986488700449	5.76121920762373	5.51298542949644	5.45573456682948	5.72959633080492	0.522635874247303	0.087866439709797	0.323317996071509
Merged-chr17-64603347-4	chr17	64603252	64603452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	1703.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	5.23798964712663	5.16182782808202	5.41261132481177	5.25393746812688	5.20453933003942	5.24924755599119	5.18193371436502	5.29581869194671	-0.0634653292762515	0.825269739817676	0.933047553258293
Merged-chr13-92923762-4	chr13	92923673	92923873	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78986.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	5.45557585207493	4.98858918975963	5.42586338225579	5.77170287097941	5.77821770234595	5.74913434974755	6.28896181469288	5.86327150646818	0.790477919621039	0.0124743938357234	0.0922796589932397
Merged-chr13-37338037-4	chr13	37337906	37338106	+	979.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7339.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	4.86291245352869	5.03286365136866	5.07140867957079	4.88528881890907	5.03787999393114	4.88108881865104	4.94786749728742	5.09937555390927	0.0737867370294644	0.813355896264667	0.927857767644014
Merged-chr1-180889977-4	chr1	180889864	180890064	+	966.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3144.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	5.19754351982514	4.87548700875438	4.91701444536168	4.44790380541341	4.80165729230769	4.82345100758303	4.66575760754583	5.24947602043187	0.0627836157969391	0.867849030595589	0.95047283198973
Merged-chr14-32077223-4	chr14	32077168	32077368	+	919.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8018.0	NR_104305	105638.0	Mm.2519	NM_172254	ENSMUSG00000021905	Dph3	DELGIP1|DelgipP1|Desr1|KTI11|Zcsl2	diphthamine biosynthesis 3	protein-coding	3.80864951919254	4.14395776715856	4.04351178867901	3.57267933812146	3.57402505556703	3.64155367129452	3.63123023442611	4.04089217750592	-0.497381788640705	0.320641576863487	0.632430335149585
Merged-chr11-120484622-4	chr11	120484534	120484734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027204)	promoter-TSS (NM_027204)	-3.0	NM_027204	56282.0	Mm.133851	NM_027204	ENSMUSG00000039640	Mrpl12	0610034O11Rik|1500031N16Rik|L12mt|MRP-L12|Rpml12	mitochondrial ribosomal protein L12	protein-coding	6.61448700910011	6.76781863110843	6.12792239218115	6.28454798719432	6.89766011501258	6.76055444158643	6.88324958674602	6.49702372376506	0.438140886280965	0.0696125027595519	0.282266330837285
Merged-chr7-99135486-3	chr7	99135375	99135575	+	669.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	5669.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	3.21329582472521	3.3035967345189	3.08713914760719	3.27197473858364	3.50987360535633	3.32459267249719	3.20243684514153	3.38112705799007	0.499128902131058	0.349624734353524	0.65714124548586
Merged-chr7-128379641-4	chr7	128379558	128379758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 4 of 4)	intron (NM_026418, intron 4 of 4)	38514.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	5.65847155928653	5.14026224858088	5.55779814762442	5.34122062642452	5.52989012339311	5.59354662957145	5.39097205252135	5.83672090195299	0.288428555567413	0.322413746120144	0.633942634212845
Merged-chr13-23698465-4	chr13	23698345	23698545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178208)	promoter-TSS (NM_178208)	13.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	7.79222793658739	8.05670452860533	8.22984359972032	7.8121001354466	8.3457754112261	8.30567017255687	8.29027214328702	8.20119710047151	0.394765664635599	0.022443096484252	0.138321687128978
Merged-chr11-52099902-4	chr11	52099754	52099954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019411, intron 1 of 6)	intron (NM_019411, intron 1 of 6)	1030.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	6.29321842027293	6.71363607357391	6.59139347367329	6.24068561812461	6.67163216990556	6.54771674496911	6.68989352913498	6.48971043979015	0.204587507851916	0.369438414137135	0.673692529630015
Merged-chr1-182983163-4	chr1	182983089	182983289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28401.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	6.06289357845444	5.71822339854272	6.24698821109213	6.09263969892613	5.3836642750514	5.85116371188071	5.64538469240835	5.74810523103504	-0.629331269567781	0.0211671157862762	0.132908798037346
Merged-chr3-37639910-4	chr3	37639840	37640040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305442)	promoter-TSS (NM_001305442)	-7.0	NM_001305441	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	5.65340397302063	5.6172822202631	5.5530214730286	5.56464826308683	5.31953892331722	5.29625023326879	5.38674477491568	5.57520739476826	-0.346598527175487	0.201496238058043	0.50391050273113
Merged-chr1-43917072-4	chr1	43916983	43917183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16911.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	5.79275060476555	6.32578400440042	5.28485853938173	6.20878171424702	5.96085472816386	5.84136971564578	5.92554965571039	5.7392459784614	-0.169171029385135	0.585804770105398	0.818454789999846
Merged-chr7-27196329-4	chr7	27196219	27196419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015782)	promoter-TSS (NM_015782)	-48.0	NM_001285825	53607.0	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	8.40102827731715	8.6409767403649	8.59625454159215	8.41152454199066	8.65105422157541	8.88865554291435	8.59305457349211	8.53425086288611	0.198372694277759	0.219920985296914	0.527559848087391
Merged-chr14-87416536-4	chr14	87416432	87416632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172605)	promoter-TSS (NM_172605)	-51.0	NM_172605	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	7.10024531530747	7.23741191872727	7.45159147511674	7.29854599691064	7.3686473909191	7.0808573492869	7.6253767145513	7.31986078591241	0.117852043043636	0.554377983456336	0.80074000106465
Merged-chr9-75196542-4	chr9	75196430	75196630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010864, intron 32 of 40)	intron (NM_010864, intron 32 of 40)	-35484.0	NM_001081322	208943.0	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	6.62723461640829	6.1634397290886	6.50358295612242	6.57025416859241	6.51190328507126	6.72723602229291	6.09229140134132	6.46570411550254	-0.0174952482840314	0.942785889821113	0.979271773922352
Merged-chr12-91756884-4	chr12	91756782	91756982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	29554.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	6.90299836991576	6.94603132266214	6.94271791795207	6.85274759850449	6.91987209058017	6.72213606376064	6.76080383182029	6.71733771430386	-0.165332106964378	0.395047882456724	0.694007780077181
Merged-chr18-70645026-4	chr18	70644894	70645094	+	970.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	76702.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	5.55219941075509	4.81931891759536	4.73313138515757	5.26401392933147	5.03844183906896	5.28731004388283	5.18248606305158	5.10970762025027	0.0259799101497622	0.940438837942466	0.978605877642248
Merged-chr17-32111335-3	chr17	32111236	32111436	+	954.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19913.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	3.7469113263915	3.42371718236523	3.46217149684454	3.52861207098333	3.1734230206983	3.05573638740127	3.33817601958934	3.40577233743256	-1.06280776603216	0.0528451749749934	0.239782412796905
Merged-chr5-125275387-3	chr5	125275279	125275479	+	901.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65715.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	2.9494860241058	2.90570094477866	3.17179239597486	3.32432777209863	2.8601784479634	2.78580196282045	2.7465231047376	2.82135327880857	-1.35741903539104	0.035971931713246	0.188408538512677
Merged-chr8-79168143-3	chr8	79168035	79168235	+	980.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	80448.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	4.98477607448669	4.33166339553933	4.9856476661466	5.84193953418806	4.21956596599453	4.40879282187203	4.78956533192352	4.37760580968406	-1.43039260918565	0.0022761155495182	0.0258515443911211
Merged-chr7-80109580-3	chr7	80109469	80109669	+	898.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173011, intron 1 of 10)	intron (NM_173011, intron 1 of 10)	5781.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	3.46350062317609	3.81050942384572	3.99099708042704	4.15353383382707	3.15360649340341	3.16740837614833	3.1943641846411	3.46210992447601	-2.25581930282821	0.000124959481122613	0.00244622962233952
Merged-chr5-144223675-4	chr5	144223569	144223769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356992)	promoter-TSS (NM_001356992)	-54.0	NM_001356993	70381.0	Mm.239412	NM_027410	ENSMUSG00000066621	Tecpr1	2210010N04Rik|mKIAA1358	tectonin beta-propeller repeat containing 1	protein-coding	7.63773587777476	7.6250538277626	8.0127558811275	7.85061728597819	7.70841429042157	7.82489180527967	7.98734831908035	7.73413738827906	0.0301194970873947	0.867779456468938	0.950447373853674
Merged-chr12-32773964-4	chr12	32773867	32774067	+	967.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46368.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	5.08735537825124	5.03310763977651	5.30349788979888	4.96577981458778	5.35019069372065	4.92500020967366	5.09638988008117	5.35467377598644	0.209848938926129	0.503452206962946	0.770381746164637
Merged-chr1-118388898-4	chr1	118388794	118388994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359346)	promoter-TSS (NM_001359346)	-164.0	NM_001359329	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	6.30842699502815	6.20135730278016	6.30954362496112	5.93616118538834	6.18556714896123	6.37162982411817	6.29512876067545	6.35821166570302	0.182751758877407	0.435836551536561	0.724862103693129
Merged-chr1-138239772-4	chr1	138239675	138239875	+	656.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33963.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	3.92637441420858	3.99792032561367	3.82954693247003	3.78232459652706	3.97073725145906	3.84289780452803	3.86278068670295	3.48259087488203	-0.209901150380361	0.652296168605752	0.85450978163594
Merged-chr8-121590381-4	chr8	121590288	121590488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026160)	promoter-TSS (NM_026160)	-80.0	NM_026160	67443.0	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	7.7939481169134	7.42874702435098	7.43196740618595	7.25920280276349	7.87087137970753	7.9188358415067	7.7347145880636	7.71258582384166	0.434603549691109	0.0220936445527367	0.136879060459504
Merged-chr12-112674540-5	chr12	112674512	112674712	+	921.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165894)	promoter-TSS (NM_001165894)	272.0	NM_001331107	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	3.91019090360143	3.75308685076682	3.85948443123526	3.51640931158432	3.67806508641639	3.93011427840742	3.79029012062188	4.61956089169649	0.811013700438105	0.110030580540111	0.366324137378052
Merged-chr6-125001351-4	chr6	125001258	125001458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145926, intron 4 of 5)	intron (NM_001145926, intron 4 of 5)	2748.0	NM_001145926	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	5.77675203646381	6.00428436995625	5.72652022016665	6.0304076941662	5.9380031928217	5.6777910140344	5.9551843320366	6.14114754851169	0.0571107640184837	0.824066683689981	0.932476232435989
Merged-chr1-184728909-4	chr1	184728791	184728991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008250, intron 3 of 3)	intron (NM_008250, intron 3 of 3)	3602.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	6.57075984189087	7.06121426350491	6.24091686775179	6.28716291545512	6.87354484879156	6.92838633859672	6.73189981877368	6.23645142690292	0.200885003370515	0.471534430917536	0.749935186197728
Merged-chr1-178303569-4	chr1	178303478	178303678	+	996.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15575.0	NM_025511	66359.0	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	5.02469096813668	4.7378554039655	5.12040743032454	4.99728150243185	4.92780086640362	4.94773624483181	4.86363435399326	4.98887941857884	-0.0859322582315142	0.787467415855195	0.917568537062929
Merged-chr12-36380408-4	chr12	36380289	36380489	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1061.0	NM_001289504	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	5.17235080112778	5.02610076397201	4.8794519530161	5.76913004844246	5.35952032190846	4.79387001032611	5.53715625905903	5.43523013869903	0.0583938371370968	0.877327993289281	0.954093522494923
Merged-chr15-78239657-4	chr15	78239512	78239712	+	877.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5199.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	4.39552672191516	4.17053991341088	4.13322000714176	4.1804183398752	4.17857391715311	4.60312670469759	4.01568044629649	4.13075262186463	0.0651729647414532	0.874790048849427	0.952942893013974
Merged-chr17-71526983-4	chr17	71526888	71527088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023294)	promoter-TSS (NM_023294)	-131.0	NM_023294	67052.0	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	8.03764307301027	8.36361449985857	8.29960295244895	8.12620363821862	8.06768252460199	8.21658388502717	8.14041268424602	8.07339926514164	-0.112382436532191	0.490033589548262	0.762020269511072
Merged-chr11-49243389-4	chr11	49243289	49243489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010794)	promoter-TSS (NM_010794)	-802.0	NM_010794	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	5.22074519109756	4.98116820934619	4.68694766163162	4.89007768106308	5.36490473320864	5.13867582586653	4.90459583545487	5.06356575564355	0.354436302984759	0.281967138236798	0.59408989528926
Merged-chr7-56042496-4	chr7	56042390	56042590	+	881.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7665.0	NM_010418	15204.0	Mm.20929	NM_010418	ENSMUSG00000030451	Herc2	D15F32S1h|D7H15F32S1|D7H15F37S1|jdf2|mKIAA0393|rjs	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding	3.6929224249515	4.02149350955378	4.08460069444801	4.04149602152807	3.76837870382327	3.69079344416846	3.8874606255113	3.80080755305097	-0.531268018159646	0.239545567101906	0.550002061893054
Merged-chr8-95349206-4	chr8	95349100	95349300	+	893.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3096.0	NM_008609	17388.0	Mm.217116	NM_008609	ENSMUSG00000031790	Mmp15	AI503551|MT-MMP 2|MT2-MMP	matrix metallopeptidase 15	protein-coding	4.82528017438982	4.36512292612679	5.12929793371953	5.19131005008925	4.36984440253461	4.24122413630911	4.35963786898677	4.63864101977431	-1.11552393406439	0.00606272503078615	0.0546758947570938
Merged-chr6-8686861-4	chr6	8686715	8686915	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252266, intron 5 of 11)	intron (NM_001252266, intron 5 of 11)	71643.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	4.22315519768997	4.63099473539207	4.22377716108615	4.49425287906735	4.60027166198922	4.48937219195494	4.29771850111237	4.0132371434489	-0.0838009259590906	0.839255571646838	0.938895262970456
Merged-chr7-135715832-4	chr7	135715728	135715928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081117, intron 1 of 13)	intron (NM_001081117, intron 1 of 13)	551.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	6.62277152056357	7.39434266254774	6.59079297159719	6.10250947010622	7.39337623983585	7.22694752018091	6.95505898104951	6.40610159508388	0.384815305834861	0.410493602308139	0.705863751236677
Merged-chr8-64941675-4	chr8	64941602	64941802	+	874.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5483.0	NM_001163747	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	4.06905588035724	4.09102913009438	3.87543058515952	4.25292811612249	3.86116479425302	3.63351869335458	4.0955256549961	3.97388570705378	-0.511049477944303	0.255718950891135	0.567362604148488
Merged-chr6-116733763-4	chr6	116733672	116733872	+	893.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17014.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	3.47359706652314	3.85566623986273	3.40974668490532	3.96016451306784	3.92466488017971	3.71070556467933	3.96809721694816	3.53358969967053	0.259644740263109	0.619097699530595	0.836324137991085
Merged-chr8-25070215-4	chr8	25070156	25070356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 3 of 11)	C-rich|Low_complexity|Low_complexity	-31294.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	5.47782068570133	5.29809491184156	5.50539834594535	5.28078206914776	5.48346937693808	5.35199924650848	5.36831798877047	5.36227847686217	0.0274256109992881	0.92169945206375	0.970941268050458
Merged-chr10-81173284-4	chr10	81173179	81173379	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3352.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	6.01750788401614	5.77069311957959	5.1869919330387	5.97707069576042	5.8700647707866	6.04208968540361	5.76706808577962	6.01425900974304	0.2195507412902	0.452436410462258	0.736781240941066
Merged-chr7-30593399-1	chr7	30593299	30593499	+	563.5	f0_balb.idr	promoter-TSS (NM_021397)	promoter-TSS (NM_021397)	-457.0	NM_021397	58206.0	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	3.14714015178387	3.25471356362791	3.26924904280835	3.26897851688253	3.16873463990156	3.32155979464106	3.56116040322488	3.2675460784094	0.347401260928974	0.51628036389827	0.778055091400033
Merged-chr1-88077329-4	chr1	88077220	88077420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201644, intron 1 of 4)	RLTR17|LTR|ERVK	6541.0	NM_201644	394434.0	Mm.300095	NM_201644	ENSMUSG00000090175	Ugt1a9	UDPGT|UDPGT 1-9|UGT1-09|UGT1.9|UGTP4|Ugt1a12|mUGTBr/P	UDP glucuronosyltransferase 1 family, polypeptide A9	protein-coding	5.18521211920371	5.16809147162811	4.85414252993758	4.68411391753432	5.27101211436174	5.02954932082545	4.93912582309701	4.55466188125473	0.00797401588175671	0.982535582243676	0.993788814012798
Merged-chr14-120835284-4	chr14	120835099	120835299	+	965.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-75995.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	4.30296128991873	4.12324855304895	4.0081223879309	3.78386044898546	4.63634996331324	4.34058335627747	4.44753366075801	4.57681824992486	1.12603778984596	0.00515321005554419	0.0485828262971629
Merged-chr14-120387527-3	chr14	120387426	120387626	+	879.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 4 of 8)	intron (NM_001360376, intron 4 of 8)	81074.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	3.61372295194214	3.86843538290882	4.40151492070108	4.92670685141276	3.23612602950849	3.45917226822554	3.71962179762359	3.67387040893993	-2.23194860771579	0.000213942057642169	0.00385231007359271
Merged-chr10-91139233-2	chr10	91139133	91139333	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15270.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	2.95427746527205	2.97061727034252	3.13209995088545	3.0540486380445	2.99016484768386	3.06209818215863	3.06422613209422	3.01506153789399	0.00301762551034987	0.995764325024996	0.998485720799524
Merged-chr19-29101315-4	chr19	29101218	29101418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021525)	promoter-TSS (NM_021525)	-57.0	NM_021525	59028.0	Mm.28630	NM_021525	ENSMUSG00000024785	Rcl1	2310040A02Rik|AI789745|C76567|RPCL1|Rnac	RNA terminal phosphate cyclase-like 1	protein-coding	9.00477616140914	8.92176763976615	9.19133429080595	9.24953054202248	8.83248535333033	8.65496044396058	9.27156876082183	8.65119080562607	-0.273834938675736	0.147907018070836	0.429376142553288
Merged-chr7-49751276-4	chr7	49751109	49751309	+	797.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-7897.0	NM_001146053	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	2.65230727395843	2.5064966015913	2.59346526638629	2.50636069633253	2.45297620747593	2.49776422165906	2.45802769810512	2.39575155505502	-0.622700765762756	0.367448999543625	0.671879929346449
Merged-chr8-111299465-4	chr8	111299347	111299547	+	954.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146218, intron 1 of 12)	intron (NM_146218, intron 1 of 12)	775.0	NM_146218	234736.0	Mm.334816	NM_146218	ENSMUSG00000033596	Rfwd3	BC027246	ring finger and WD repeat domain 3	protein-coding	4.54726097516632	4.83404146019012	4.70861033577182	4.67346292476411	4.94242275787407	4.63522598552297	4.44104032751679	4.7427162779913	0.0425793498185917	0.904859313639554	0.964691960037782
Merged-chr15-80037372-4	chr15	80037250	80037450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4a|LINE|L1	-22542.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	5.52714433136049	5.57858740132021	5.91961480735558	5.7907899276892	5.67394949436067	5.83864234340183	5.44224239920288	5.75897544246745	-0.0557465537097951	0.836693326427575	0.937953980810766
Merged-chr5-35551950-3	chr5	35551838	35552038	+	898.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23132.0	NM_030208	78890.0	Mm.98522	NM_030208	ENSMUSG00000029097	Trmt44	2310079F23Rik|Mettl19	tRNA methyltransferase 44	protein-coding	3.30983556780306	3.34047809533198	3.66557283249297	3.46025083755612	3.02137079949501	3.42422301049477	3.11220100370038	3.36566050546837	-0.788478553303034	0.159645458125769	0.447307670600461
Merged-chr2-59188811-4	chr2	59188704	59188904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	Lx7|LINE|L1	27954.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	5.73658230490312	5.96665434929636	5.59975170018738	6.16667842683823	6.01681963067878	5.8883074900247	6.10614499956299	5.99245941790387	0.150618664550673	0.569517300335235	0.809382816358399
Merged-chr1-161552234-4	chr1	161552119	161552319	+	739.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57562.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	3.96463340562416	3.89418365714806	4.2673251740207	3.94947301586641	3.95474110217338	4.08778899338294	3.73976296013822	3.86165998098055	-0.284376313027325	0.519341409778939	0.780012083964476
Merged-chr6-28882504-3	chr6	28882420	28882620	+	871.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 18 of 23)	intron (NM_019776, intron 18 of 23)	-50773.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	3.12269216721007	2.96154854501798	3.06658068968143	2.97883779101078	2.98148120218666	2.91737708632958	3.05512861786699	3.06497914006561	-0.0990331505315627	0.862974571404893	0.948424590341057
Merged-chr6-6580658-2	chr6	6580565	6580765	+	694.5	f0_balb.idr|f1_balb.idr	Intergenic	Lx8|LINE|L1	-2007.0	NM_009169	20422.0	Mm.2469	NM_009169	ENSMUSG00000042541	Sem1	DSS1|Shfdg1|Shfg|Shfm1	SEM1, 26S proteasome complex subunit	protein-coding	2.9302793324286	2.76498221458829	3.08545336203119	2.95808938463775	2.28426861922121	2.50125874133641	2.39148016657057	2.68871009194522	-2.84574348119623	0.000930486994082778	0.0126976866855479
Merged-chr9-114812152-4	chr9	114812049	114812249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 1 of 3)	RSINE1|SINE|B4	-30156.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	6.52009046937147	6.09963755117488	6.28536016942152	6.26816152905188	5.83593487011189	5.78225642619099	5.8187971166309	6.04943004464728	-0.664737233271146	0.00652615352323823	0.0577767514465888
Merged-chr19-34474867-4	chr19	34474871	34475071	+	779.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009890, exon 1 of 1)	exon (NM_009890, exon 1 of 1)	164.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	3.30066242479341	3.43445218561869	3.52632523883665	3.23276169549889	3.31737688693083	3.79200979372317	3.28923314132692	3.35935733103396	0.272481615469671	0.609571117510358	0.831081414209299
Merged-chr5-140722377-3	chr5	140722278	140722478	+	957.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1749.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	4.41629304436444	4.56222540488127	4.84325537238161	4.60816248600069	4.00198902612723	4.09297105655134	4.16847030848307	4.45570804383197	-1.02844221801165	0.0104880366772183	0.0817127804999696
Merged-chr6-145211057-4	chr6	145210949	145211149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133688)	promoter-TSS (NM_133688)	-79.0	NM_177222	320662.0	Mm.207779	NM_177222	ENSMUSG00000043541	Casc1	A230084G12Rik|Las1	cancer susceptibility candidate 1	protein-coding	9.27556545607656	9.53300274365598	8.937484029328	9.32619487234491	9.59973929986014	9.76487813424242	9.57100326155582	9.45508418097655	0.385548352513113	0.0234947885755723	0.142314318442742
Merged-chr11-6626023-4	chr11	6625922	6626122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130457)	promoter-TSS (NM_001130457)	45.0	NM_001130457	21379.0	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	6.64883880869001	6.97631382963266	6.75517918349209	6.68891791331265	6.77637588203491	6.84218365382498	6.79059131836892	6.61356009308285	-0.0184659813086279	0.928138414504328	0.973863292981759
Merged-chr10-17344036-4	chr10	17343935	17344135	+	817.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-248253.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	4.36162514666136	4.02481256965159	4.01054110843827	3.9284482358152	4.30579684876938	4.18460512400832	4.22221478544993	3.8472051189186	0.193803380157987	0.652738262802584	0.854764223296605
Merged-chr2-129328455-4	chr2	129328350	129328550	+	854.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-18478.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	4.40097642492754	5.04187190000701	4.57515584650606	4.5732625681875	4.81931840817719	4.62285154689841	4.51318443865454	4.19937585531367	-0.227177328290233	0.571684133459208	0.810781529929199
Merged-chr16-45038439-2	chr16	45038349	45038549	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B2|LTR|ERVL	-55562.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	3.13167882621411	2.91414092872017	3.132148944847	3.04308062914739	2.70815831562897	2.66348982053412	2.77071630523948	2.77799606343964	-1.559671757224	0.0166412448225433	0.112917746923147
Merged-chr6-121135147-3	chr6	121135024	121135224	+	921.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4102.0	NM_001270475	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	3.2394267199529	3.39282820449169	3.38332473827557	3.45373943742933	4.02818065986594	3.91691376996964	4.23242485829941	4.0212753890927	2.01608348109724	4.90940895185343e-05	0.00111430746104584
Merged-chr11-79121684-4	chr11	79121584	79121784	+	895.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	MIRb|SINE|MIR	24789.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	4.66530311408222	4.75823998393586	4.46685261009421	4.52083991081236	4.76316398035972	4.35885150714698	4.44682228165903	4.42025954954724	-0.184480982476142	0.620401628359906	0.837195812179456
Merged-chr10-127041981-4	chr10	127041901	127042101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205036)	promoter-TSS (NM_001205036)	69.0	NM_010792	17299.0	Mm.251593	NM_010792	ENSMUSG00000006732	Mettl1	2810012D02Rik	methyltransferase like 1	protein-coding	5.8212734783231	6.16666809114428	6.11787105955573	5.7632853914255	5.66456473652545	5.92465562400836	5.50156094371331	5.71926139268707	-0.427822815138181	0.111995205288028	0.369848135714787
Merged-chr2-164486411-5	chr2	164486316	164486516	+	980.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026797)	promoter-TSS (NM_026797)	-39.0	NM_026797	52840.0	Mm.256927	NM_026797	ENSMUSG00000017734	Dbndd2	1110017A21Rik|2900022J10Rik|AU041050|AW048677|D2Bwg0891e|Nkip|R74724	dysbindin (dystrobrevin binding protein 1) domain containing 2	protein-coding	4.91732686056682	4.9175853416078	4.70247438555242	4.86364587335945	4.49720880136624	4.83703331410669	4.37575017539812	4.88135721389676	-0.414760934115405	0.242560563405085	0.553291388378231
Merged-chr17-6154627-3	chr17	6154529	6154729	+	945.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054040, intron 1 of 13)	intron (NM_054040, intron 1 of 13)	16481.0	NM_054040	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	3.88654896845588	4.19701138697264	3.55480470869758	3.97992257535237	3.77977903863323	4.05717239477215	3.71686570978695	3.61446931317142	-0.368412519291182	0.447840715915915	0.73332468018769
Merged-chr5-73557232-4	chr5	73557123	73557323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153313, intron 8 of 9)	intron (NR_153313, intron 8 of 9)	66197.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	7.0295472072045	6.81346518159038	6.96861024144517	7.35812612191967	6.93727198735225	6.82931294742142	6.98316398093312	6.88482142772123	-0.225127854582257	0.28950070775101	0.601517859389756
Merged-chr10-79883443-4	chr10	79883345	79883545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011178)	TTS (NM_011178)	-2867.0	NM_015779	50701.0	Mm.262194	NM_015779	ENSMUSG00000020125	Elane	Ela2|F430011M15Rik|NE	elastase, neutrophil expressed	protein-coding	5.33924022188476	5.12351534042826	5.21310654822867	5.58457180840652	5.47460662383702	5.45352707857	5.55826974895152	5.45183468581351	0.240510846306492	0.411498379609193	0.706942536257065
Merged-chr6-134106014-4	chr6	134105927	134106127	+	835.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	70327.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	4.80874669680783	4.16906722639683	4.34511736793474	4.7542807208877	4.97311620955336	4.32536856147556	4.45753938999232	4.14166470641699	-0.0544963114129542	0.902865412320829	0.963956578622192
Merged-chr5-43185715-4	chr5	43185642	43185842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-47721.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	6.74546057840892	7.18165165653264	7.35296951801627	7.42505363742333	7.06028345796858	7.0882538651278	7.50640570492718	7.16892495953412	0.00731694814111981	0.974242287243362	0.990857401763433
Merged-chr16-91936572-4	chr16	91936486	91936686	+	894.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4956.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	4.12138730289134	4.07675775090639	4.21268456644175	4.00471637790411	4.14885542503001	4.29414965538569	3.79059257342988	4.41148473165527	0.205730303517227	0.628820941636321	0.841823003934767
Merged-chr15-72917614-4	chr15	72917506	72917706	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029640, intron 15 of 21)	intron (NM_029640, intron 15 of 21)	-107282.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	4.95393350919089	5.14398483319371	4.87740411463718	5.16609872240851	5.38425688189181	5.20299288132363	5.137006125198	5.3910663970039	0.43304580319607	0.154483128994907	0.439801241388062
Merged-chr5-115491950-4	chr5	115491816	115492016	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7432.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	5.87456952729388	5.7461904877108	6.01525165165719	5.74528128363552	5.42600782071232	5.18202915361999	5.36530561911663	5.32496075602027	-0.866780251513135	0.00158404929330621	0.0195239904152801
Merged-chr11-44377556-2	chr11	44377442	44377642	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22521.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	3.16067385161098	3.76522709624345	3.16106659632391	2.99460595547508	3.28075477338339	3.27393073914833	3.08725335433661	3.02990352382607	-0.484194463447139	0.431232922867093	0.721549793529779
Merged-chr17-50795642-4	chr17	50795543	50795743	+	884.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 17 of 21)	intron (NM_028162, intron 17 of 21)	96962.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	4.6966662391729	4.28333423876503	4.42698614993578	4.40521968757222	4.53168322162183	4.64096776639605	4.36384682959071	4.50769947585676	0.135688257150645	0.713799622744452	0.885503657342269
Merged-chr16-92410329-4	chr16	92410251	92410451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-10273.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	6.72747540039272	6.66442879884239	6.88654528124733	7.01141854428116	6.2653042789852	6.14249966695002	6.51435115234527	6.12487385419087	-0.824442943693581	0.000263176700408091	0.00455117938735362
Merged-chr7-115018604-4	chr7	115018492	115018692	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67318.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	4.4683071556509	4.19316150873624	4.36812430495788	4.62221746897013	5.20407432843208	5.05791771615289	5.3243295777746	5.21982959869349	1.53784306644246	1.44605330952642e-05	0.000383775646975322
Merged-chr2-164947696-4	chr2	164947582	164947782	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013599)	promoter-TSS (NM_013599)	-537.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	4.61273885753556	4.60621888075366	3.88437362342111	3.67856074220501	4.07348220370993	4.51681366576677	4.32281066945534	4.46306800269221	0.216809194770995	0.657792572165569	0.857527792933573
Merged-chr4-32288636-5	chr4	32288581	32288781	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-128754.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	4.49501861409863	4.76907101470142	4.2341450071154	4.45459608592674	4.19501757141023	4.36161802697087	4.47477949554862	4.13139909099866	-0.494210849751212	0.212834402197726	0.517816171020324
Merged-chr1-144204909-3	chr1	144204816	144205016	+	886.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27544.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	4.34361808745299	4.44321322834573	4.10560584573142	4.94308927542156	4.00729084038475	4.33362122228238	4.28086061130726	4.29726702844626	-0.682722867986658	0.120403650610015	0.3841249359854
Merged-chr11-53803267-4	chr11	53803165	53803365	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	32792.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	5.52008340341786	5.45096249224591	5.43754433679556	5.62160184206567	5.53352373350657	5.25410307593092	5.6203485265842	5.43376064153217	-0.0791027703631348	0.774456617943897	0.911836036864256
Merged-chr15-81871913-4	chr15	81871797	81871997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080633)	promoter-TSS (NM_080633)	-5.0	NM_026737	68479.0	Mm.271715	NM_026737	ENSMUSG00000061360	Phf5a	1110007B08Rik	PHD finger protein 5A	protein-coding	5.52079931440798	5.54950415957537	4.87981040116446	5.12201186135789	5.89997563279757	5.69545405141565	5.35432800548477	5.37748304827313	0.553658845092994	0.0890260921551908	0.325564540357292
Merged-chr1-164136139-4	chr1	164136044	164136244	+	972.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011347, intron 8 of 15)	intron (NM_011347, intron 8 of 15)	-15691.0	NM_007976	14067.0	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding	5.50515021164849	5.24536019430637	5.40772984554245	5.27721795635022	4.91111844058549	4.60038404760886	4.81080321638476	4.83031229141646	-1.07212079559899	0.000829371086271902	0.0115797968908881
Merged-chr16-43390584-3	chr16	43390493	43390693	+	936.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	29603.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	3.13176184902	3.09906210667096	3.75919464798101	3.41710793020944	3.45493118286049	3.37306057282159	3.30736202374929	3.25849739137332	-0.0902548840478006	0.873945524032921	0.952744110383191
Merged-chr2-32694233-4	chr2	32694112	32694312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010236)	promoter-TSS (NM_010236)	-37.0	NM_010236	14287.0	Mm.3830	NM_010236	ENSMUSG00000009566	Fpgs	AA408187	folylpolyglutamyl synthetase	protein-coding	8.03726709715152	8.11187567885441	8.09647287540437	8.00926623366458	8.04791656877327	7.94529712407457	8.14274975362937	7.75422814978069	-0.102033038293336	0.538937087987346	0.791879177298088
Merged-chr13-75871555-3	chr13	75871446	75871646	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028493, exon 12 of 12)	3' UTR (NM_028493, exon 12 of 12)	31660.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	4.08289894597491	4.06932186181042	4.63384489617436	3.90403241766821	3.68620147501515	3.77267507510752	3.81481149839526	4.03414544602087	-0.992355506236219	0.0382627924116996	0.196062724143141
Merged-chr2-36271359-4	chr2	36271256	36271456	+	993.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40930.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	5.75724100453059	5.35951545640469	5.33454973346362	5.55809532738805	5.10607836164654	5.24994209949961	5.11787281068726	5.10447453970535	-0.674300624097678	0.0221109494051026	0.13695051059048
Merged-chr1-91456335-9	chr1	91456244	91456444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011066, intron 1 of 22)	intron (NM_011066, intron 1 of 22)	2984.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	6.79050747263996	6.43054404646154	7.02048185579579	6.77134486278147	6.75825193959189	6.48293361575372	6.93786367717982	6.74433863161769	-0.0324557537730873	0.886036813002964	0.957217228436056
Merged-chr10-76032559-4	chr10	76032451	76032651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177475)	promoter-TSS (NM_177475)	-61.0	NM_177475	64453.0	Mm.80609	NM_177475	ENSMUSG00000049764	Zfp280b	D10Jhu82e|Suhw2	zinc finger protein 280B	protein-coding	7.7722603470633	7.67914692206166	7.7003676250312	7.91895566234223	7.86429597424075	7.91089620304378	8.10769120468241	7.76829012319625	0.181221390461771	0.294790898899196	0.606891558075013
Merged-chr3-93547346-4	chr3	93547255	93547455	+	942.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7762.0	NM_009112	20194.0	Mm.1	NM_009112	ENSMUSG00000041959	S100a10	42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11	S100 calcium binding protein A10 (calpactin)	protein-coding	5.05247846931032	4.63394243662428	5.28301992755316	4.9900017338364	4.40780164176967	4.94814052713061	5.02828752123283	4.68809981090168	-0.453537003662716	0.221863651922072	0.529933989267153
Merged-chr11-70472968-3	chr11	70472865	70473065	+	950.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12981.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	3.82151954313663	3.85419866578955	4.29993725086061	4.12400971423354	3.81290809123296	3.57709790921081	3.85775223251684	3.87153481166612	-0.719937530695923	0.121681518747889	0.386356101585507
Merged-chr9-107602278-4	chr9	107602192	107602392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042779, intron 9 of 19)	intron (NM_001042779, intron 9 of 19)	3110.0	NM_009153	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	5.94258225551924	5.95421657315347	5.79598655972885	6.28759790757871	6.44434170450319	6.47884361452624	5.8420811936781	5.93939314224913	0.291336807543037	0.299271729252194	0.611545471309502
Merged-chr18-49827625-4	chr18	49827508	49827708	+	904.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5389.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	4.77362345534822	4.52827546470588	4.40181368557638	4.37298882200882	4.60260401621621	4.23788626579905	4.24652728749669	4.35502700298709	-0.320302435353609	0.41350921405884	0.708462289086549
Merged-chr18-12947345-4	chr18	12947234	12947434	+	847.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5493.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	3.44367368848823	3.56965042936623	3.71407261177382	3.7709005386718	3.72434333467844	3.3627210755645	3.83471947480956	3.38109858889919	-0.122468750829866	0.81259951560095	0.927652305694976
Merged-chr11-52231999-4	chr11	52231877	52232077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011543)	promoter-TSS (NM_011543)	-18.0	NM_011543	21402.0	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	6.79001956450444	6.97001242868792	6.71789223448842	6.46520888354222	6.97787807011113	7.15218179306697	6.78472430127316	6.80054198834563	0.28159778436722	0.200920838372701	0.503065263001114
Merged-chr1-93631547-3	chr1	93631477	93631677	+	784.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021537, intron 2 of 11)	intron (NM_021537, intron 2 of 11)	4150.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	3.99613807523409	4.5182993304691	3.83439017520065	4.63343372305309	3.8053962647626	4.17153938724663	3.92868812618142	3.83233224985578	-0.948809557152404	0.049040314954346	0.22892448702357
Merged-chr11-119041081-4	chr11	119040996	119041196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013926)	promoter-TSS (NM_013926)	-183.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	8.25534446742555	8.36598575903453	8.00764370645398	7.88595341865617	8.46925314875337	8.59717746765307	8.50997590167455	8.3297565796675	0.434824957412782	0.0142276810491731	0.101038821650114
Merged-chr7-143480742-2	chr7	143480642	143480842	+	661.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042760, intron 5 of 10)	intron (NM_001042760, intron 5 of 10)	5626.0	NM_001042760	18400.0	Mm.271740	NM_008767	ENSMUSG00000000154	Slc22a18	AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A	solute carrier family 22 (organic cation transporter), member 18	protein-coding	3.13169193538317	2.96976614761972	2.871345267324	3.04599812567552	2.89508392546376	3.18325377424454	3.47410399749813	3.24349953207728	0.786251683875434	0.185943329620672	0.483870824275444
Merged-chr3-88023033-4	chr3	88022956	88023156	+	982.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022031, intron 6 of 6)	CpG	4455.0	NM_022031	73940.0	Mm.294467	NM_022031	ENSMUSG00000004894	Hapln2	4930401E20Rik|Bral1	hyaluronan and proteoglycan link protein 2	protein-coding	5.17960449218606	4.91546346952667	4.61554368281904	5.17956058437928	5.21269026689955	5.08570716483114	5.24233557641716	5.11454983907527	0.304964862417586	0.350261667155418	0.657851515629344
Merged-chr16-23332385-3	chr16	23332294	23332494	+	669.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 5 of 7)	L1M4c|LINE|L1	41924.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	3.49193434334774	3.06842406704461	3.1713420893187	3.21255695785562	3.34425669360411	3.01060106926933	3.1601503133625	3.39223263350162	-0.00904030091297111	0.987314836222616	0.995258250959001
Merged-chr2-165233653-3	chr2	165233581	165233781	+	831.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174988, intron 1 of 11)	CpG	1056.0	NM_174988	104010.0	Mm.151819	NM_174988	ENSMUSG00000053166	Cdh22	-	cadherin 22	protein-coding	3.2618090302438	3.13907070526037	3.08999441878916	3.04936453729206	2.87510237861528	3.13725845812579	3.13814292564619	3.31292190741016	-0.0524854230455361	0.927349467940058	0.973437269072031
Merged-chr4-19927203-4	chr4	19927111	19927311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4645.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	6.02343275524599	5.8859963440983	5.82372926418052	5.92905505286534	5.90427445751541	5.51060525959328	6.12945421530861	5.97830016354238	-0.0222719782428027	0.931482404928129	0.975308419949524
Merged-chr11-120571282-4	chr11	120571162	120571362	+	950.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011032, intron 2 of 10)	intron (NM_011032, intron 2 of 10)	1991.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	6.2381193720018	6.65350381795256	6.32082272408454	6.55870784630898	4.86525748480901	4.86939998785597	5.024394406468	4.71827467006888	-2.75111408701965	4.27430855578665e-20	1.4626971571747e-17
Merged-chr8-70854078-3	chr8	70854001	70854201	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032397, intron 3 of 9)	intron (NM_032397, intron 3 of 9)	2907.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	3.56225881169601	3.6042467038394	3.3945151468354	3.79536357545455	3.43405261211576	3.50759586210711	3.49561172878849	3.4512828534355	-0.462792685722084	0.358050251018243	0.664104096759109
Merged-chr15-58829038-4	chr15	58828923	58829123	+	977.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5596.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	5.48854131765364	5.87401593796879	5.30814182229263	5.70132854281558	5.61521963470944	5.60736869026745	5.56918326499027	5.13133928066169	-0.205825465246971	0.491470261426809	0.763040652141929
Merged-chr5-24035118-4	chr5	24034990	24035190	+	947.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4400.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	4.80478317578484	4.56012469060376	4.64866957091148	4.88879827763415	4.85593675731473	4.74022498420011	5.28717641480989	4.6033532347458	0.322222458677323	0.37381114023069	0.677216414469042
Merged-chr10-57532493-4	chr10	57532394	57532594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019760)	promoter-TSS (NM_019760)	35.0	NM_019760	56442.0	Mm.29344	NM_019760	ENSMUSG00000019877	Serinc1	1500011D18Rik|AI315070|AIGP-2|TMS-2|Tde1l|Tde2|Tms2|mKIAA1253	serine incorporator 1	protein-coding	7.83801168058537	7.70216272357444	7.32078660442953	7.6667533680135	7.79465537519151	7.76639013327054	7.78667674364657	7.75084436668456	0.167280393577736	0.351673014417179	0.658927363883434
Merged-chr9-96393901-4	chr9	96393774	96393974	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-29443.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	3.78359204806769	3.54135854107581	3.784097448917	3.892312366784	4.29254822978233	4.31024113392684	4.07569564695441	4.4490315967245	1.36673293764391	0.00198341335237427	0.0232390747339339
Merged-chr16-55858696-4	chr16	55858612	55858812	+	803.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134457, intron 4 of 5)	intron (NM_001134457, intron 4 of 5)	-20071.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	4.01415867734302	4.18293344620773	3.86488759136801	3.80025713082219	3.79479012457278	4.13849387244241	3.79586835254036	4.14625992144414	0.0176376624269112	0.968668021695239	0.988762939668968
Merged-chr17-45474914-4	chr17	45474820	45475020	+	868.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027649)	promoter-TSS (NM_027649)	18.0	NM_027649	71020.0	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	4.23558298301308	4.64265572419734	4.32910992957274	4.43020140042	4.24631077531007	4.41109530260762	4.51426692145525	4.32643969307502	-0.117171465317812	0.759664129096333	0.905741537670396
Merged-chr8-70653454-4	chr8	70653372	70653572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023217, intron 2 of 4)	intron (NM_023217, intron 2 of 4)	6266.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	6.07842984043434	6.37055222948757	5.80413966405072	5.5730471899197	6.18072385764692	6.29496274208406	6.02766564024876	5.98990719468363	0.231877466735558	0.409749861365287	0.70525942551561
Merged-chr7-45682905-4	chr7	45682814	45683014	+	735.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271578, intron 3 of 3)	intron (NM_001271578, intron 3 of 3)	-1108.0	NM_001358870	243967.0	Mm.291240	NM_001033356	ENSMUSG00000070564	Ntn5	Gm484	netrin 5	protein-coding	4.22718632802666	4.71811671794806	4.11651919937286	3.87618005327303	4.46890641355688	5.15257972986742	5.07020539919049	4.88522336133289	1.40394588509612	0.00105941821345318	0.0141002859041481
Merged-chr6-134243768-4	chr6	134243648	134243848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 5 of 8)	intron (NM_001303102, intron 5 of 8)	-152581.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	5.51763707278734	5.83772562906723	5.6770002406637	5.43293317852451	5.61684850578356	5.51544926726416	5.8312541998496	5.39709469133424	-0.0243896505307421	0.930816381493893	0.975149452016452
Merged-chr5-72914255-4	chr5	72914137	72914337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113423)	promoter-TSS (NM_001113423)	-125.0	NM_001113423	75991.0	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	8.53094117546994	8.99157725707312	8.81707736907476	8.7724963285887	8.84134624404044	9.23375966238535	9.19490719195219	8.89737737048072	0.324959802377034	0.06328898339731	0.267002647748843
Merged-chr13-49273025-3	chr13	49272933	49273133	+	829.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 14 of 17)	intron (NM_015759, intron 14 of 17)	-24327.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	3.26832558648951	3.46468489590162	3.21005799103402	3.42943356328074	3.29388054780827	3.12411716219676	3.13831584815064	3.32306705621595	-0.470975408957265	0.38701753842871	0.688039112029745
Merged-chr11-116390871-3	chr11	116390772	116390972	+	663.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 2 of 18)	IAPEz-int|LTR|ERVK	22160.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	2.84483925438181	3.47434552984479	3.20468083201097	2.64679307299581	3.59175337571032	3.32107400764982	3.61669804278444	3.5370726758203	1.56322231232664	0.0176785455047789	0.117734018570795
Merged-chr1-183553375-3	chr1	183553277	183553477	+	855.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134129.0	NM_001308052	78772.0	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	2.83054930416033	2.75647324216045	2.83082389908292	2.57530933361414	3.6858087181768	3.36606042026343	3.79802013681423	3.5136029695667	3.7179483180778	2.64933460462907e-09	1.57541343210436e-07
Merged-chr7-81176610-3	chr7	81176527	81176727	+	754.950012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-37177.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	4.13028545518234	4.22862106786844	3.94728142852625	3.87668618757542	3.4754354664795	3.66625157013294	4.23265955703223	3.94491225542217	-0.527551485385118	0.28524793841746	0.596955868770328
Merged-chr4-9027997-4	chr4	9027897	9028097	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-241296.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	4.66722107834793	4.78878611799662	4.66796425734484	4.82236336330828	4.71031628529597	4.80154113601507	4.68565183851865	4.91885697673077	0.0650572691053519	0.845312782202444	0.941471757098182
Merged-chr1-35810748-4	chr1	35810639	35810839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-257661.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	6.29454541000765	6.76567059331057	6.56093676473282	6.60714954305651	6.61224153709187	6.32848272995565	6.60437871551976	6.49082942168347	-0.0789814474608118	0.722303905283332	0.889145957666795
Merged-chr6-87743115-4	chr6	87743027	87743227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 2 of 7)	intron (NM_001159697, intron 2 of 7)	12258.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	6.88294089368882	7.12718239954873	7.01550653740784	7.10580702852242	7.24522167226404	6.94592001795943	6.82141227455115	7.25852628386982	0.063935842812557	0.754518874574168	0.903334299140224
Merged-chr10-81571765-4	chr10	81571703	81571903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3484.0	NM_019725	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	7.72151383465428	7.40981136290019	7.40902773841672	7.72208522420368	7.47634133382247	7.4939205112544	7.41118420253628	7.16452766053825	-0.247138530771366	0.195750917180183	0.496626551681217
Merged-chr17-34291771-4	chr17	34291659	34291859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3988.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	6.53590723096159	6.6952216341312	5.93907112642393	6.20418194401245	7.10607977361495	6.90411383496713	7.28654819948791	7.06657563878853	1.03032266412196	1.81041471892571e-05	0.000467138334715089
Merged-chr3-142594749-4	chr3	142594644	142594844	+	988.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010259)	promoter-TSS (NM_010259)	-103.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	4.82148407159225	5.00472639173155	5.48278818670961	5.40479045260793	5.40869121980137	5.68325316562908	5.65434415933833	5.72487733233912	0.696189909707282	0.0275499258854025	0.158360346813944
Merged-chr1-191733939-4	chr1	191733826	191734026	+	752.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134829, intron 2 of 7)	intron (NM_001134829, intron 2 of 7)	15531.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	3.31871528850635	3.39281503460585	3.4821415352363	3.44632254546312	3.18098015149362	3.02478572129384	3.41624592394502	3.5300046160815	-0.39765135696634	0.469528062661632	0.748378822236993
Merged-chr6-17463719-7	chr6	17463622	17463822	+	908.507935	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008591)	promoter-TSS (NM_008591)	-235.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	4.2133007684972	3.95940412685053	4.12676966522101	4.155608515667	3.91178722026753	4.10650984141615	3.86344360834206	4.21128214612536	-0.24406885671124	0.562767351879097	0.805832530849589
Merged-chr6-123171248-4	chr6	123171153	123171353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-1770.0	NM_001004159	381809.0	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	5.53400152492923	5.81225640281238	5.7211679577658	5.62038329871328	5.8659895747308	5.46279619027409	5.87480517643685	5.76560707425275	0.143456656076449	0.587687826752067	0.819326924567384
Merged-chr16-58498595-4	chr16	58498487	58498687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	intron (NM_001357433, intron 2 of 10)	24839.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	8.89738255662749	8.936599022384	9.01858066377531	8.91318101268575	8.83818176468283	8.98151333847578	9.07171271189823	9.06050073458313	0.0588887427694882	0.68049243980312	0.868914526635087
Merged-chr11-51857923-4	chr11	51857851	51858051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199299)	promoter-TSS (NM_199299)	-321.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	5.76768076747156	5.68689481602973	6.41525853915157	5.9442921067364	6.46819898657823	6.35858271297787	6.44556451583973	6.15867371862544	0.590169625105912	0.0249019275221507	0.14807310517558
Merged-chr3-148325142-4	chr3	148325027	148325227	+	994.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	629508.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	5.34842999191377	5.07587479994631	5.34934879462007	5.6537422817964	5.5060812669378	5.46338825288274	5.4350202825199	5.00961368415998	-0.0300248446535036	0.924390365723491	0.971993881816914
Merged-chr15-99259763-3	chr15	99259620	99259820	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045627, intron 1 of 2)	intron (NR_045627, intron 1 of 2)	-7759.0	NM_016766	51812.0	Mm.383472	NM_016766	ENSMUSG00000037570	Mcrs1	C78274|ICP22BP|MSP58|P78	microspherule protein 1	protein-coding	4.95961908277499	5.07166547239222	4.64779437756304	4.90120978552187	5.01223867155335	5.19974815567516	5.00348040487382	4.8486746893907	0.222377793172826	0.492462233388311	0.763514905474768
Merged-chr9-56259839-6	chr9	56259773	56259973	+	796.937012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172924, exon 4 of 7)	exon (NM_172924, exon 4 of 7)	-98803.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	3.34482319654834	3.38636928178026	3.34524994646608	2.90428024202966	3.67130107492195	3.98322576427794	3.50696070511698	3.62512937623321	1.55662202322654	0.00424790083643196	0.0420471886575429
Merged-chr1-36571776-4	chr1	36571668	36571868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-13387.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	8.27143258495474	8.22496363342181	8.61448062545011	8.73889109185435	8.35956484095743	8.03631415502778	8.68404118449444	8.08068558844436	-0.210413493693068	0.318502304254514	0.630371357872652
Merged-chr1-161251255-4	chr1	161251137	161251337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007453)	promoter-TSS (NM_007453)	-27.0	NM_001303408	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	6.37204622503425	6.75523390974979	6.44916069129756	7.15561236172561	6.96161368690185	7.07120853867786	6.8982798269651	6.51621410180596	0.192996242456236	0.460931730243052	0.742827215671333
Merged-chr3-27338623-4	chr3	27338537	27338737	+	866.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009425, exon 5 of 5)	3' UTR (NM_009425, exon 5 of 5)	21560.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	4.20770039300055	4.20772953524096	3.6345911414076	4.09783095252361	4.19386971942051	4.15093429185396	3.96165008741451	4.02520732630072	0.0745662022142712	0.866327885362439	0.949895290173807
Merged-chr9-84343869-4	chr9	84343767	84343967	+	786.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	395086.0	NM_199195	12040.0	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	3.57251229246108	3.77829409650108	3.51119913125298	3.9645136089308	3.56354134082188	3.96586763499789	4.08986551547194	3.84252993021941	0.405470147030223	0.416815064071997	0.710673328516556
Merged-chr4-62287090-4	chr4	62286979	62287179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025286, intron 1 of 3)	intron (NM_025286, intron 1 of 3)	650.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	6.62719313457603	6.51756474060979	6.31638799918184	6.64822598626129	6.86679863989331	6.8041872484243	6.57916382927868	6.40647239772875	0.204145159640026	0.363336813127654	0.668503886726201
Merged-chr10-20005675-4	chr10	20005570	20005770	+	940.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 2 of 29)	intron (NM_008580, intron 2 of 29)	71144.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	4.97434898070468	4.36954235288858	4.72631177012489	4.89820149235746	4.62681042003965	5.08036406922082	4.66465284815148	5.0035946943106	0.173921189480128	0.638067016351029	0.847040716325261
Merged-chr19-46563152-4	chr19	46563053	46563253	+	846.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355233, intron 1 of 6)	intron (NM_001355233, intron 1 of 6)	10029.0	NM_001355233	56350.0	Mm.22085	NM_019718	ENSMUSG00000025035	Arl3	-	ADP-ribosylation factor-like 3	protein-coding	3.7427886435732	4.29162883956769	3.79947287545129	3.99475244972421	4.08527162117725	3.53789223439536	3.88895722549618	4.25466522059021	-0.018050134580905	0.970860958888673	0.989540146809868
Merged-chr7-135694488-2	chr7	135694388	135694588	+	606.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081117, exon 12 of 14)	exon (NM_001081117, exon 12 of 14)	21891.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	2.78990419359167	2.84740351440274	2.66078435982285	2.55770340510398	2.70924498175292	2.83370070285839	2.78014420413695	2.78883993916671	0.312915537596902	0.621404484002903	0.83781985513211
Merged-chr1-39714178-4	chr1	39714069	39714269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145660, intron 2 of 14)	intron (NM_001145660, intron 2 of 14)	6820.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	5.62953940878583	5.64702090707649	6.10015260710939	5.66181563187954	5.40767016190369	5.34895368045185	5.83601374796674	5.2706505573652	-0.479229762777104	0.107219196024808	0.36126651615857
Merged-chr13-23761501-4	chr13	23761360	23761560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178192)	promoter-TSS (NM_178192)	-211.0	NM_178192	326619.0	Mm.228709	NM_178192	ENSMUSG00000060093	Hist1h4a	-	histone cluster 1, H4a	protein-coding	8.54989624214131	8.84734601215549	8.28175513721232	8.36901651641328	8.85308948816804	9.06349087666713	8.7490828358075	8.81493011162734	0.431463648920013	0.0168523353423457	0.113872448958879
Merged-chr10-78139856-4	chr10	78139741	78139941	+	929.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29927.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	5.15075486733155	5.95584084720667	5.54000219181847	4.96593555466063	5.05912710674029	4.73163362670683	4.99026159102194	4.68586304481518	-1.07471248050236	0.004832681002976	0.0463577922618005
Merged-chr11-11691867-4	chr11	11691775	11691975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301863, intron 1 of 7)	intron (NM_001301863, intron 1 of 7)	1698.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	6.2593394502004	6.41981337257965	6.48032339045121	6.60050020110268	6.67195351777464	6.29059330560636	6.58940791207969	6.58812896699988	0.135501876049425	0.54321754482115	0.794367638237739
Merged-chr6-13606620-6	chr6	13606585	13606785	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028990, intron 1 of 4)	L2|LINE|L2	1413.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	3.97161248549268	4.20289495290328	3.62733476807162	4.05468359055665	4.41681198957117	3.81104214504558	4.00476640334494	4.32115883615858	0.471457337461663	0.314736287254764	0.62673172609645
Merged-chr14-47505771-2	chr14	47505663	47505863	+	657.666687	f1_balb.idr|f1_c57bl6.idr	intron (NR_027414, intron 2 of 5)	ORR1D2|LTR|ERVL-MaLR	33202.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	2.2492299819842	2.46418633940396	2.32982222357416	2.19375690563252	2.79593416381641	2.72028919754513	2.7771199510627	2.67224516232517	2.50662273555402	0.000492046620729444	0.00762206450857477
Merged-chr2-167222288-4	chr2	167222215	167222415	+	890.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008968, intron 4 of 9)	intron (NM_008968, intron 4 of 9)	18222.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	3.94991809411681	4.0429948178992	3.67054263214496	4.13146420563913	4.36005763194811	4.12271994277818	4.07551362792905	3.78766585280683	0.36621231932962	0.424409145060424	0.716123917662497
Merged-chr5-33377791-2	chr5	33377691	33377891	+	867.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081101)	promoter-TSS (NM_001081101)	-905.0	NR_153108	71101.0	Mm.132178	NM_027674	ENSMUSG00000037355	Uvssa	4933407H18Rik|D330017J19Rik|Kiaa1530|mKIAA1530	UV stimulated scaffold protein A	protein-coding	3.07974321710643	2.97310346626506	2.95702864236358	2.84867267268856	3.02574300250699	3.24946847344257	3.06849188822676	3.07851640314242	0.605544789783201	0.287544892590728	0.599383779240209
Merged-chr11-4836933-2	chr11	4836804	4837004	+	866.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_010898, intron 1 of 15)	intron (NM_010898, intron 1 of 15)	-3769.0	NM_001252253	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	3.59161034442392	3.49824504437075	3.48469538557654	3.08231773418297	3.84028649395976	3.41938662469883	3.52514151430928	3.53751801712091	0.595612114064217	0.266387776945641	0.578085840707737
Merged-chr2-85037179-4	chr2	85037076	85037276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136081)	promoter-TSS (NM_001136081)	56.0	NM_182990	20833.0	Mm.219793	NM_182990	ENSMUSG00000027067	Ssrp1	C81323|Hmg1-rs1|Hmgi-rs3|Hmgox|T160	structure specific recognition protein 1	protein-coding	7.17657220781458	7.39493515669448	7.26728145708197	7.28446803595078	7.4416084992781	7.28379040178135	7.64780202448348	7.14940417417423	0.151004508874256	0.433746738385748	0.723256357491443
Merged-chr3-84853000-3	chr3	84852903	84853103	+	715.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 1 of 13)	ORR1E|LTR|ERVL-MaLR	-11142.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	3.82576609434061	3.69395797917305	3.64759082419747	3.35731379003816	3.08121660103647	3.37237512968303	3.30890249757546	3.18986255134552	-1.43425184154177	0.010643094758948	0.0825953817975533
Merged-chr5-118633257-4	chr5	118633162	118633362	+	964.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	72543.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	4.97930379700888	4.72642867263589	4.69435910466979	4.90847158150226	4.7144337466559	4.56048874458683	4.82236408348986	5.03845379047398	-0.0878366852595141	0.797792491816575	0.921862017583033
Merged-chr9-40974233-4	chr9	40974135	40974335	+	964.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019465, intron 9 of 9)	MTEa|LTR|ERVL-MaLR	-9682.0	NM_001357359	70989.0	Mm.335087	NM_001081121	ENSMUSG00000032023	Jhy	4931429I11Rik|BB239335	junctional cadherin complex regulator	protein-coding	4.99260223326736	5.39901929781396	5.33061042981111	5.55065716700011	5.4271125585035	5.20971996628015	5.6599561627606	4.9510830517375	-0.00784095019029258	0.980931523864046	0.993041272875068
Merged-chr14-50944133-3	chr14	50944035	50944235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	promoter-TSS (NM_013632)	promoter-TSS (NM_013632)	-168.0	NM_013632	18950.0	Mm.17932	NM_013632	ENSMUSG00000115338	Pnp	AL024301|AU015798|Np|Np-1|Np-2|Pnp1	purine-nucleoside phosphorylase	protein-coding	6.28651665245128	6.47346932350348	6.52797657517761	5.98863013735502	6.15905474052827	6.40609544800889	6.36355206417813	6.5233064121696	0.0638857699981068	0.795904722827478	0.920988786781118
Merged-chr5-18037496-2	chr5	18037396	18037596	+	820.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	74926.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	3.28315875651924	2.95373148935009	3.52101788365851	2.89779442782769	3.12286189109497	3.10298869065026	2.91559207151326	2.85317369112797	-0.705406286320525	0.267896092290605	0.579715317944637
Merged-chr2-137571080-3	chr2	137570979	137571179	+	861.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-454559.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	3.61877252677982	3.19341950964494	3.30803355379923	3.92863707281617	3.01799181833115	3.0096583151536	3.23636176617095	3.36360635775537	-1.42771481762307	0.0207423158613371	0.131237093395032
Merged-chr19-8718515-4	chr19	8718409	8718609	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 1 of 9)	intron (NM_001161413, intron 1 of 9)	-4612.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	5.10521489813226	4.8752423577077	4.97125963790041	4.94673183825117	5.29551461392858	4.91657978894882	5.11238076186046	5.13411956778858	0.306679071827737	0.322409070203685	0.633942634212845
Merged-chr10-25427580-3	chr10	25427510	25427710	+	645.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	19242.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	2.96611970005137	2.98209196193991	3.02820972221815	3.08730992781439	3.06456615111016	3.07379697006359	3.01760534927003	3.14173143261059	0.215823510396215	0.702135118909462	0.880019572484699
Merged-chr19-53369939-2	chr19	53369839	53370039	+	923.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008543, intron 4 of 5)	intron (NM_001008543, intron 4 of 5)	20102.0	NM_001356986	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	3.5343452102606	3.44262631422063	3.11115423557682	3.08473419830955	3.74482284917261	3.59893785033511	3.51995223800765	3.30776574485928	0.874051347046556	0.108316779182261	0.363245230879349
Merged-chr13-56354020-1	chr13	56353920	56354120	+	784.5	f0_balb.idr	Intergenic	Intergenic	-8880.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	3.42919634086925	3.30284817148835	3.98000047157658	3.95939362957353	2.88561744716712	3.36187284960265	3.02513218507219	3.42774912297461	-1.84304990014515	0.00434178894024759	0.0427565294656728
Merged-chr6-97856425-4	chr6	97856309	97856509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	49351.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	5.57699514262175	6.17192566821585	5.84542109021698	5.94079332655801	5.14621659558237	5.48718154291909	5.43739389512997	5.30404622460327	-0.966078663797435	0.000752186470747307	0.0107148164853169
Merged-chr7-122261756-3	chr7	122261654	122261854	+	805.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27371.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	5.01081284521377	4.14457118755066	4.60959741625644	4.27431141276661	4.10965700842671	4.40751884535607	4.1616853869016	4.36621868527368	-0.65759609556666	0.132648683492469	0.405642655871397
Merged-chr5-63966548-4	chr5	63966467	63966667	+	871.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145923, intron 1 of 6)	intron (NM_145923, intron 1 of 6)	2330.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	4.64535218578987	4.40814634073359	4.56966385123458	4.46653232565568	4.30949504893987	4.53164008606564	4.33668096935116	4.84754245756769	-0.00386064432679166	0.99188224130605	0.996882127784068
Merged-chr18-62229973-4	chr18	62229872	62230072	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49872.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	4.90228331688675	5.08852341149795	4.79370261045385	4.43493107621771	4.89587362107868	4.85091691607644	4.65257291094241	5.1519270986317	0.177182788673319	0.627902128742933	0.841356751004848
Merged-chr3-81983790-4	chr3	81983703	81983903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-8075.0	NM_019911	56720.0	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	6.43626793737429	6.23994264009977	6.65369897122892	6.29050228320652	6.46774216077061	6.2678326205033	6.22435633757377	6.3089321426026	-0.114246604336016	0.619169608192444	0.836373658130526
Merged-chr11-72782296-4	chr11	72782196	72782396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024926, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	13543.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	5.74853731589891	5.89936974100923	5.41875728082895	5.61468118240854	5.86946469686533	5.59690519739062	5.74425699223058	5.8388815612201	0.151282405957443	0.570519520862943	0.810152119115078
Merged-chr6-91685138-4	chr6	91685041	91685241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 1 of 14)	intron (NM_009320, intron 1 of 14)	1074.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	6.97474439937681	7.0082522353666	6.81349460836388	7.01928714875926	6.92043280358948	6.96102459964395	7.09554451291258	7.21271581828139	0.12014041139633	0.534976236675949	0.789530863577801
Merged-chr8-126572495-4	chr8	126572376	126572576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20960.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	6.64542752987109	6.9427397166798	6.64659828103672	6.54544877125765	6.34572377692646	6.96517615247992	6.51789512723066	6.61085921054402	-0.115499308971699	0.624585876979406	0.839547496648358
Merged-chr2-128782392-4	chr2	128782273	128782473	+	977.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 13 of 18)	intron (NM_008587, intron 13 of 18)	-35930.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	5.60899382174679	5.64148692929636	6.12677363095982	6.05050455532681	5.22528609820319	5.10028044456146	5.41868465362833	4.86692293569747	-1.23608533497872	7.33947568669254e-05	0.00156271773826829
Merged-chr5-43360516-3	chr5	43360430	43360630	+	848.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125176.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	3.6092255509025	3.77063998655383	3.82923362914228	4.17762152050782	3.71747615097996	3.94911201538526	3.86239546871585	3.77560274756051	-0.166614562327729	0.727684761850439	0.891606148888584
Merged-chr17-46254327-2	chr17	46254227	46254427	+	913.875	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001111142, exon 1 of 6)	5' UTR (NM_001111142, exon 1 of 6)	162.0	NM_001111142	224813.0	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	3.96139249504818	4.06535984625493	3.64558037615792	3.92961581034132	4.1302574728172	3.569341567152	3.89783617686663	3.91203838687475	-0.0254316130637752	0.956971841813771	0.984757116793997
Merged-chr17-5630412-3	chr17	5630312	5630512	+	878.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	MLT1F2|LTR|ERVL-MaLR	137812.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	3.89906388691186	3.37334732592718	3.76046082453442	3.81218693709827	3.60850901003546	3.66428197561636	3.83777882157713	3.3601407155528	-0.303529200902015	0.552636501794547	0.799868677982226
Merged-chr18-21669930-3	chr18	21669823	21670023	+	861.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17555.0	NM_001081403	225266.0	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	3.96451850682622	4.11758709242858	3.78465641356439	4.16405075678413	3.11020104627682	3.21983379408191	3.2451161741768	3.39023638059426	-2.87137666901619	1.16537460202577e-06	4.02280304547005e-05
Merged-chr1-58677824-5	chr1	58677756	58677956	+	816.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347056, intron 5 of 13)	intron (NM_001347056, intron 5 of 13)	14589.0	NM_001347056	108812.0	Mm.442063	NM_175370	ENSMUSG00000047528	Als2cr12	4933405P16Rik|4933425F06Rik	amyotrophic lateral sclerosis 2 chromosome region 12	protein-coding	2.80574221060989	3.18468015374056	2.80600606401101	3.01163274216534	3.07097422723506	3.11082491206296	3.10600404958847	3.00071744181197	0.43070004418379	0.471038558368002	0.749682569283725
Merged-chr2-22928449-4	chr2	22928367	22928567	+	752.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149721, intron 7 of 10)	intron (NR_149721, intron 7 of 10)	32945.0	NM_001355467	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	3.4602260084639	3.28815132146156	3.46067649299211	3.55381041505368	3.40824450169586	3.79507091755255	3.9233459891163	3.45885451481502	0.669011650365936	0.195816027003442	0.496685517285939
Merged-chr3-105046098-3	chr3	105045990	105046190	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	6863.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	3.4934816608994	3.68470709294918	3.88816248140855	3.51623824612798	3.61478111129215	3.48715895082938	3.59006464375851	3.4332063836314	-0.356519431742858	0.473574751457728	0.75124977120592
Merged-chr14-59201115-4	chr14	59201027	59201227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360611)	promoter-TSS (NM_001360611)	-101.0	NM_027764	71330.0	Mm.234195	NM_027764	ENSMUSG00000035469	Rcbtb1	5430409I18Rik|AW111883|CLLD7|CLLL7	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding	7.7618551609515	7.50643785608654	7.76315670346478	7.82735979386015	7.51817010769739	7.68574383059733	7.4902857182879	7.54952534973581	-0.215652544448073	0.217829451872059	0.524753191687863
Merged-chr9-24298413-4	chr9	24298323	24298523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175678, intron 6 of 9)	ORR1E|LTR|ERVL-MaLR	200405.0	NM_175678	319239.0	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding	6.32647486398073	6.27708194226237	6.79321183487054	6.96984515418052	6.52333946632947	6.25072753391054	7.0223049967512	6.41655083828803	-0.0699938910693094	0.802146592693209	0.923733899390227
Merged-chr4-126126937-4	chr4	126126801	126127001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 4 of 10)	intron (NM_028800, intron 4 of 10)	-21102.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	5.81969892804379	5.86071565534457	6.37136235353907	5.87215895796445	5.73612370921572	5.70588774253977	5.98806041690102	5.29439317432802	-0.467493579037129	0.110111412377114	0.366485761293531
Merged-chr10-68125193-4	chr10	68125086	68125286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 7 of 9)	intron (NM_023598, intron 7 of 9)	145616.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	7.28427604814486	6.72848870730303	7.20409703166898	7.37741473357207	6.6637440243896	6.60812818292729	7.05841015236589	6.67048726745746	-0.576362196060306	0.0132439393487799	0.0962321722036344
Merged-chr1-54565604-3	chr1	54565499	54565699	+	871.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7915.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	3.38848588435584	3.35229145931354	3.80289586633589	3.60651872546815	2.89899054765855	3.26438962033381	3.07432142921118	2.93898897714286	-2.021282000929	0.00106747583840889	0.0141815574365167
Merged-chr11-4544524-4	chr11	4544468	4544668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028860, intron 1 of 17)	B2_Mm2|SINE|B2	50247.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	5.81522395169622	6.0481403903833	5.76602735269836	5.91586505277664	5.98996630226862	5.86431086368758	5.88098645328837	6.24486249135676	0.172800987982972	0.488297855542925	0.76118893988362
Merged-chr1-20941562-3	chr1	20941464	20941664	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10062.0	NM_027974	71877.0	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	5.72983966285754	5.62468042399076	5.54440607186176	6.01222672930861	3.45207148792202	3.82498408081195	3.82498418032836	3.83827925625184	-6.50625353957803	9.88429366468281e-14	1.30046975740935e-11
Merged-chr13-41747110-2	chr13	41747010	41747210	+	989.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100378.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	2.85905713458027	3.09021884748155	2.71433902920831	2.72115198226821	3.12266827758666	3.38551102523267	3.09724352390223	2.98896890125528	1.26368026203824	0.0381013101370818	0.195488586048248
Merged-chr5-129008040-4	chr5	129007972	129008172	+	870.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152615, intron 1 of 11)	intron (NR_152615, intron 1 of 11)	500.0	NR_152615	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	3.81090825205413	3.61973143824056	3.65653416081648	3.65401434155367	3.76419759576739	3.65783018166146	3.84244808087418	3.90240762452484	0.335221854081966	0.459351938503683	0.741915398927925
Merged-chr3-122620050-8	chr3	122620060	122620260	+	821.770813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153118)	promoter-TSS (NM_153118)	-446.0	NM_001114665	214459.0	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	3.29210647513596	3.3470012577858	3.35528668590426	3.34908304315899	3.4883209144646	3.79913668098991	3.40239011925063	3.81273326888782	0.975619666205153	0.0538630013942163	0.24225934617721
Merged-chr16-44066584-4	chr16	44066486	44066686	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-24578.0	NM_001359085	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	4.54990213348299	4.65892816870903	4.81315904057489	4.94398743122087	4.54394821168711	4.34860815288705	4.48801168423659	4.62833694297397	-0.555827356339266	0.124905462880546	0.392245916455235
Merged-chr9-95612388-4	chr9	95612305	95612505	+	899.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-25223.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	4.25407994421221	4.43684990801127	4.52312244059287	4.66303919943519	4.58102037371724	4.43149065226925	4.50237761431597	4.63571284887584	0.109590159297353	0.767403496541952	0.909004900573458
Merged-chr11-106134869-4	chr11	106134769	106134969	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 6 of 15)	intron (NM_011947, intron 6 of 15)	25058.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	4.92521399011266	5.02275354574875	4.88995904353888	5.19758542577558	4.80446469114234	4.98948891967726	4.90249923403312	4.92273795438361	-0.25814236968734	0.421159456180725	0.713771969129928
Merged-chr1-36073825-3	chr1	36073729	36073929	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	5429.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	4.56556673151815	4.14943698830939	4.90476582361186	4.50941039969231	4.57013876525563	3.9097911802131	4.25924732688695	4.18002106649634	-0.704147574680739	0.119013538004326	0.381720183060508
Merged-chr11-32580672-4	chr11	32580581	32580781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 4 of 18)	intron (NM_009288, intron 4 of 18)	47415.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	7.30063309441236	7.69646006714693	7.11044534299094	7.43150583672998	7.25682459254943	7.16044951561446	7.37500427760657	7.08089432960169	-0.247047294586316	0.225730830738537	0.534241429840117
Merged-chr5-149051865-8	chr5	149051697	149051897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313894)	promoter-TSS (NM_001313894)	-181.0	NM_001313894	15289.0	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	5.96948198510492	5.86938662861965	6.19866249658465	5.8886744698148	6.18121656967018	6.40846940374816	6.02734877610433	6.21302788426432	0.363675849481587	0.130492959722786	0.402128252667253
Merged-chr2-34905165-4	chr2	34905091	34905291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028716, intron 6 of 14)	intron (NM_028716, intron 6 of 14)	8785.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	9.16915483685433	9.39223692111326	9.07124926505504	8.98677207579979	9.2340505568469	9.37699099329816	9.51294099905611	9.11959028635596	0.192880988330175	0.244483637774155	0.555708779858777
Merged-chr16-33894685-4	chr16	33894589	33894789	+	978.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	ORR1D2|LTR|ERVL-MaLR	65024.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	4.85211332239567	4.78706761743034	4.74406181198397	4.76145398524219	4.52345523602122	4.75832805373105	4.79465385106417	4.81444653318764	-0.138674560816741	0.679828199179885	0.86857902618052
Merged-chr3-97998522-2	chr3	97998422	97998622	+	905.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15016.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	3.28641482002072	3.06432245000949	3.07301604160521	2.97090806748727	3.01952721013001	2.84939312598895	2.87653206023167	3.07140192404911	-0.575696856358938	0.336251624848043	0.646333562921219
Merged-chr16-90186296-6	chr16	90186149	90186349	+	878.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34493.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	3.01351709372272	3.06503883073952	3.3369538157117	3.1539128529367	2.76572794473984	2.99319626335383	2.87640902053352	3.01238795925425	-1.02656914122378	0.0917472557834316	0.331176931863121
Merged-chr3-135402502-4	chr3	135402386	135402586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20947.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	5.66169045569059	5.44416362201694	5.52940723143707	5.51561420014496	5.57683007737929	5.70489020141127	5.6832957501398	5.90974046063428	0.307301995226965	0.243260885492279	0.554277235777552
Merged-chr13-94965249-4	chr13	94965137	94965337	+	828.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11107.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	4.43253067293071	4.05242804866839	3.97636226451114	4.07898712905233	4.46524043876701	4.04402194978888	4.55559943913994	4.17635797503541	0.470631849443131	0.262328899615631	0.574184848071147
Merged-chr6-125426593-4	chr6	125426508	125426708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46104.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	6.46671759863118	6.48799203065752	6.30440700208632	6.48744211797997	6.67587531957928	6.53784626965361	6.51682255481175	6.52954798043859	0.186828231186888	0.370950420399586	0.675068605253279
Merged-chr1-154062044-3	chr1	154061926	154062126	+	765.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-139161.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	3.7000983442093	3.51407297087182	3.59464510530453	3.75002849871854	3.59993371242825	3.71161826719499	3.40604920648681	3.92974282059665	0.0764311914492307	0.876346859568169	0.953507285608198
Merged-chr1-37002266-4	chr1	37002175	37002375	+	801.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-62748.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	3.47794644317557	3.6527272181767	3.42207920736308	3.36940848642517	3.69729636832328	3.3485476416083	3.40943085853628	3.53040155557608	0.10534342451149	0.836071873214504	0.93760163289947
Merged-chr18-38343634-3	chr18	38343538	38343738	+	893.7666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4645.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	4.07424980020544	4.7681225503314	4.69457539889502	4.31806411170615	3.75955720520211	3.72639932336048	3.72323795281464	4.02168172312855	-1.80320739838063	0.000141152431392317	0.00271103316623684
Merged-chr17-44261959-1	chr17	44261859	44262059	+	741.0	f0_balb.idr	intron (NM_172621, intron 4 of 5)	intron (NM_172621, intron 4 of 5)	73387.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	3.24780708510328	3.29208037957975	3.52297143166596	3.46801489943417	3.01962566925158	3.58869040384451	3.35204218880296	3.18406419945623	-0.335341619111337	0.551078268501106	0.798818834995932
Merged-chr11-54161023-4	chr11	54160926	54161126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	52262.0	NR_045506	71056.0	Mm.56332	NR_045506	ENSMUSG00000086209	4933405E24Rik	-	RIKEN cDNA 4933405E24 gene	ncRNA	5.90902030586009	5.82026370457579	5.5334649900983	5.87723234106639	5.85902821864881	5.76694114988253	5.76713633293903	5.64132291536819	-0.0576168561988484	0.822891619663306	0.932185203682946
Merged-chr2-49425794-4	chr2	49425684	49425884	+	813.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-25702.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	3.98813443526919	3.64246535290959	4.17623638536122	4.32455291723393	4.39613302519936	3.89001073899721	4.15751345149701	4.03582542572763	0.186732042790855	0.691907242965875	0.87467626526963
Merged-chr10-52382133-4	chr10	52382047	52382247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199272)	promoter-TSS (NM_001199272)	-23.0	NM_001199272	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	8.6529034363808	8.76415360772954	8.79831554758143	8.89668592092681	8.81343783565644	8.51672102386127	8.93339984935447	8.52618547374326	-0.0883903822916758	0.596257103642128	0.824577120267011
Merged-chr15-86135507-4	chr15	86135447	86135647	+	921.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001205353, exon 19 of 19)	3' UTR (NM_001205353, exon 19 of 19)	-50181.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	4.13815987800993	4.3374033172013	3.78549167311559	3.90353754166415	3.6310596665225	4.30900703469142	3.98175330774832	4.04477769415878	-0.131776885860527	0.781018865087285	0.914773964552732
Merged-chr2-174675864-4	chr2	174675762	174675962	+	929.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099328, intron 3 of 4)	intron (NM_001099328, intron 3 of 4)	32328.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	4.41801229114325	4.59791508480066	4.4186780359099	4.96286145498056	4.66055429183019	4.59446502041028	4.60913214969595	4.70333941022999	-0.0053702401195233	0.988676615037201	0.995492522898152
Merged-chr5-123142983-4	chr5	123142871	123143071	+	858.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001040398, exon 2 of 17)	exon (NM_001040398, exon 2 of 17)	778.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	4.45266445040612	3.62191129675266	3.86582199474298	3.91358955056414	3.9058404134698	4.04130857960272	3.85005430712061	4.10557892343218	-0.0446890254923205	0.925304947870841	0.972448363693831
Merged-chr11-100325214-4	chr11	100325059	100325259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5210.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	6.67220554080425	6.72312857308919	6.16856987464977	6.40280112083924	6.32257198821922	6.36760377115197	6.5196335486091	6.51650988002066	-0.112438196908336	0.629638225843997	0.842339368939137
Merged-chr1-166731049-3	chr1	166730938	166731138	+	706.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49193.0	NM_001347135	240894.0	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding	3.65631196830503	3.56171127270988	3.24040565942388	3.72592581466851	3.43967135127969	3.54994925962861	3.73844143593543	3.79874068507559	0.213538636689617	0.679210712976905	0.868329272937217
Merged-chr8-26158775-4	chr8	26158676	26158876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199042, intron 1 of 2)	CpG	607.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	7.38361674817838	7.56918820054597	7.3751981855204	7.29940416183215	7.03822639087824	7.20779009181115	7.10467970914052	6.91849212471694	-0.45920548104681	0.0141254845469118	0.100604148945831
Merged-chr4-53125276-4	chr4	53125175	53125375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	34620.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	6.71827124340149	6.07985244554473	6.08240570167037	6.57027777142457	5.79764981130549	6.10199189891572	6.11317394054772	5.81949094086102	-0.675032911918278	0.0124535935528745	0.0921992192587966
Merged-chr18-6241454-4	chr18	6241354	6241554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008448)	promoter-TSS (NM_008448)	70.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	6.86336272332318	6.81119770057487	7.26475522989752	6.88213787508194	6.23755133377287	6.3219325621838	6.8032454484128	6.53215104997789	-0.68073205307804	0.00395714151865812	0.0397201959826352
Merged-chr2-90533229-2	chr2	90533111	90533311	+	690.5	f0_c57.idr|f1_balb.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	47436.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	2.87722314560992	2.93379754294514	3.09314429508627	2.79817504605386	3.61728594191193	3.70947154602577	3.37607988441922	3.33447062200252	2.3174520601055	3.92105043926286e-05	0.000915971280657338
Merged-chr10-100138710-4	chr10	100138549	100138749	+	982.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122828.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	4.85569716450321	4.82972942887669	5.31562911862024	4.93011123842943	4.81200283417828	4.6063689749882	5.23669365855405	4.56538031091202	-0.313651147535166	0.392274975024134	0.691857527785958
Merged-chr2-166235092-4	chr2	166234993	166235193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38815.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	6.03250814362749	5.92586053327192	5.83605490335958	5.51186407490591	5.95509317323272	5.98749242784403	5.75825360427844	5.94534953800189	0.151214292917317	0.568133099576143	0.808524190153757
Merged-chr2-160048296-4	chr2	160048193	160048393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC2|LINE|L1	31640.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	5.72533030780492	5.32294154315904	5.24340779106487	5.29464730775051	5.08242726311169	5.48252756787102	5.48011174672932	5.53024916648567	-0.0129816898278739	0.966059734482898	0.988022131369328
Merged-chr14-73444888-2	chr14	73444788	73444988	+	982.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-59599.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	3.25365223637524	3.38649947878754	3.36939530098157	3.27738140694866	3.305106767226	3.3029572973867	3.35636856856308	3.47300931001559	0.141252514600952	0.783199383345138	0.915515669194523
Merged-chr12-103343659-4	chr12	103343559	103343759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	12342.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	7.96911566847545	7.88941471916478	8.01840913016237	8.33356013527589	8.10411090563261	7.80475967231444	8.34886691890348	7.90060062087579	-0.0163440960381544	0.9338496839852	0.976171965495374
Merged-chr5-150233595-6	chr5	150233480	150233680	+	929.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26350.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	4.0693334557695	4.2332384329612	4.4612907403028	4.23196818499595	4.78719845605809	4.71524029270452	4.83331782988481	4.4154644372617	1.00879102383976	0.00697449430249865	0.0607060272072637
Merged-chr19-29805192-4	chr19	29805091	29805291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172836, intron 1 of 7)	CpG	818.0	NM_172836	240613.0	Mm.313351	NM_172836	ENSMUSG00000046138	9930021J03Rik	Gm9832|mKIAA2026	RIKEN cDNA 9930021J03 gene	protein-coding	5.50884928827622	5.44426032859194	5.61538724925381	5.54979826903574	5.42973177318137	5.73714987564268	5.48219260804287	5.3908689962271	-0.0355293514174051	0.895917716597752	0.960979922829742
Merged-chr5-149184443-4	chr5	149184331	149184531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286825)	promoter-TSS (NM_001286825)	-129.0	NM_001115153	231915.0	Mm.29402	NM_001013378	ENSMUSG00000041264	Uspl1	E430026A01Rik	ubiquitin specific peptidase like 1	protein-coding	8.79799996521075	8.91809256283961	8.67124657237384	8.5312307642751	8.88535393110009	9.0446240197801	9.07945828681623	8.80995012609488	0.279900625247285	0.0838953299309749	0.314981799915581
Merged-chr17-36031954-4	chr17	36031846	36032046	+	964.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010398, intron 2 of 6)	intron (NM_010398, intron 2 of 6)	755.0	NM_010398	15040.0	Mm.439648	NM_010398	ENSMUSG00000067212	H2-T23	37b|37c|H-2T23|H2-Qa1|Qa-1|Qa-1(b)|Qa1|Qed-1|T18c|T18c(37)|T23b|T23d	histocompatibility 2, T region locus 23	protein-coding	6.10070892315577	6.32294102526263	5.89290977072704	4.98061774260347	6.17129958304483	6.06879012748702	5.693763112005	5.46141338426967	-0.0460702887519968	0.900589422424356	0.963161804192488
Merged-chr6-129406215-4	chr6	129406119	129406319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001204239)	TTS (NM_001204239)	-2643.0	NM_001205363	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	5.36597015293753	5.29775447123455	6.17256347772754	6.19839403204532	5.74778051418437	5.76364516579062	6.06681747778713	6.03507501762555	0.110155318487813	0.738790354451938	0.89698683073579
Merged-chr1-106759749-4	chr1	106759642	106759842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316750)	promoter-TSS (NM_001316750)	0.0	NM_027534	70750.0	Mm.458911	NM_027534	ENSMUSG00000009905	Kdsr	6330410P18Rik|9430079B08Rik|Fvt1	3-ketodihydrosphingosine reductase	protein-coding	8.5086575757915	8.71817731443709	8.70476214251909	8.88016776642838	8.76730023361813	8.65208026728128	8.93044993028256	8.48430820295091	0.00690647314910937	0.967541051959035	0.988554022584792
Merged-chr17-29006985-4	chr17	29006881	29007081	+	901.9208369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357173, intron 1 of 13)	intron (NM_001357173, intron 1 of 13)	1014.0	NM_134115	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	4.16748888883236	3.83022908777265	3.71610407555683	4.18601014110941	4.06934300681039	3.64151530675408	3.96941502171858	4.3961447674229	0.133032792092067	0.783408519794395	0.915636043192861
Merged-chr11-22710880-4	chr11	22710780	22710980	+	886.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	148855.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	4.52669195683384	4.13066102025313	4.48569058886204	4.32773290760003	4.32930947907176	4.70115142493005	5.05666267963918	4.52446904460388	0.677338241862514	0.0886627445837209	0.32502062608666
Merged-chr9-96719884-4	chr9	96719776	96719976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359960)	promoter-TSS (NM_001359960)	-26.0	NM_001359959	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	6.10513383853981	6.15374582707621	6.35871364547705	6.12078609694971	6.2937825039981	6.34545795962044	6.52035500565659	6.37162767323971	0.30207814744185	0.174668165673869	0.469105586707178
Merged-chr7-66134378-4	chr7	66134281	66134481	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 2 of 2)	intron (NM_001081163, intron 2 of 2)	24866.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	5.23675660353367	5.73428289016529	5.04024991312901	5.20009286231236	5.03043996111989	5.06841884709268	5.05072994803209	5.1060152135059	-0.498889969106129	0.124135994965656	0.390992275271539
Merged-chr17-17448871-4	chr17	17448774	17448974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025681, intron 4 of 5)	intron (NM_025681, intron 4 of 5)	46188.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	7.42727962532966	7.672703011062	7.41847543083209	7.7130839839399	7.61873120780258	7.62598756211998	7.99774593217971	7.56548122711764	0.183127002630639	0.339547692898297	0.648774648981312
Merged-chr5-64380513-2	chr5	64380413	64380613	+	880.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87429.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	4.07131022052351	4.46247296174545	4.37552073499844	3.77733297364659	4.25689915549388	3.98282519160625	3.90066577182197	4.20832169547549	-0.229268125520559	0.618371941569217	0.836000920352511
Merged-chr8-11419868-4	chr8	11419788	11419988	+	898.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 20 of 47)	intron (NM_009932, intron 20 of 47)	-58041.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	3.86946300537507	4.38565995555801	4.02451486456291	4.02122431071531	4.16986025588968	3.87599586380049	4.22714991018206	3.86786980160762	-0.100789743773341	0.820438856133149	0.931216561407907
Merged-chr15-57906845-4	chr15	57906735	57906935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5364.0	NM_001081396	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	7.95804150645797	8.08191262409395	8.05399959274311	7.8929528706624	8.10570559437567	8.23113463974726	8.03491617942928	7.867023393721	0.0920006754990379	0.580422555264685	0.815718435955212
Merged-chr19-37508174-4	chr19	37508073	37508273	+	919.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42245.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	4.0071973779973	4.28617836719458	4.39710790426612	4.33469814903684	4.42720443960718	4.56827102548231	4.60472233994964	4.26170859919228	0.468010908542654	0.227436257197637	0.536115043419104
Merged-chr14-32174336-4	chr14	32174243	32174443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033988, intron 6 of 9)	intron (NM_001033988, intron 6 of 9)	8554.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	6.2522886279698	6.60392325232974	6.99903183834537	6.50740887146558	6.65143641829625	6.32631684764959	6.28072068617939	6.60159510202656	-0.192828925557143	0.44016871313834	0.727657961132312
Merged-chr14-103048889-3	chr14	103048780	103048980	+	913.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008392, intron 1 of 4)	intron (NM_008392, intron 1 of 4)	1868.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	3.94151081724781	4.21728296563776	3.65231888027716	3.60927430267013	3.37515447908733	3.71663580548356	3.1983002744203	3.53740024098104	-1.29588570412986	0.0183382894714062	0.120883599396668
Merged-chr2-170221129-4	chr2	170221034	170221234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78459.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	5.49362398945874	5.1862939709335	5.40708595683821	5.50901742606085	5.66625170886698	5.72402539590435	5.82904055234488	5.57249586039352	0.490136996784474	0.0711786851395657	0.286190342289394
Merged-chr9-16114952-3	chr9	16114849	16115049	+	819.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	-240393.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	3.99922584947729	3.65538481277804	4.2232075098697	3.99630463623409	3.96072376945862	3.96596143949799	4.20362512264152	4.13591076791895	0.232490628424604	0.596992448517562	0.825033016076722
Merged-chr5-107980135-1	chr5	107980035	107980235	+	798.400024	f0_balb.idr	intron (NM_026062, intron 1 of 4)	L1MB2|LINE|L1	6942.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	4.06956037523368	3.97276765637794	3.88960683472461	3.98924158582112	3.83564438635367	3.611570511298	3.77350274347677	3.67720813046074	-0.72122384743454	0.109984410627218	0.366215108014911
Merged-chr4-136147043-4	chr4	136146927	136147127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3205.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	5.98873872778347	5.82565548690651	6.0116138668811	5.90785205909722	6.02964909066954	6.00250880305261	6.21554368151841	6.24310886442557	0.303180107998475	0.198460617835212	0.499992714139038
Merged-chr2-52885114-6	chr2	52884997	52885197	+	869.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	27229.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	4.49767405207851	3.8582069504329	4.25299129470249	4.51678794164045	4.453391230117	4.33376007407343	3.9343349597996	4.29463872869381	-0.100440688446802	0.820866835319494	0.931443689364036
Merged-chr3-148804059-4	chr3	148803961	148804161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	150574.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	7.65086128636494	6.98416755953153	7.54873837205833	7.84493623754519	7.69698701925208	7.03993806637267	7.73257836605302	7.84524594443087	0.0882476248275187	0.726267047763593	0.891034932051019
Merged-chr10-43994756-4	chr10	43994671	43994871	+	846.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172393, intron 2 of 19)	intron (NM_172393, intron 2 of 19)	10075.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	4.07292702777456	3.91281107309695	4.24654977961945	4.38096562530982	3.73495335027393	3.93729877428896	4.05601869801754	4.11669418709806	-0.581074922996091	0.192158683233105	0.491736937402451
Merged-chr19-53529043-4	chr19	53528932	53529132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085390)	promoter-TSS (NM_001085390)	-286.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	8.79140267550887	8.8821299284465	8.58199792780478	8.5258656745832	8.60290972572026	8.71691806057664	8.48028837587491	8.47908121602566	-0.159450904848338	0.328906973318486	0.640144325858488
Merged-chr10-7037419-3	chr10	7037319	7037519	+	874.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001302795, exon 6 of 6)	3' UTR (NM_001302795, exon 6 of 6)	-14234.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	4.65434240957476	4.05138584124932	4.51422088924483	4.63300689193502	4.08951736193465	3.83640262994267	4.20318025196242	4.35254877666743	-0.861917808857256	0.0475565044679339	0.224873741548068
Merged-chr2-62648808-4	chr2	62648706	62648906	+	928.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2551.0	NM_001164477	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	4.20993103022047	4.31493906048869	4.25780846355703	4.27226439698912	4.55270914021089	4.43092057844976	4.37011564623908	4.38723296053651	0.418769357087995	0.259034547362402	0.570794998659786
Merged-chr8-8660006-2	chr8	8659906	8660106	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010111, intron 1 of 4)	CpG	767.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	3.09775731840855	3.07900134935494	2.98007735973855	2.68225872280609	2.955442475919	2.95872645561856	3.14023966950641	2.97857957804784	0.20833771043413	0.733077328838065	0.89437268327795
Merged-chr4-141060686-4	chr4	141060588	141060788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145958)	promoter-TSS (NM_001145958)	-143.0	NM_001145958	230872.0	Mm.80685	NM_172122	ENSMUSG00000040860	Crocc	-	ciliary rootlet coiled-coil, rootletin	protein-coding	8.38918522005519	8.51521209329948	8.25143836027317	8.05751235879033	8.4943368428964	8.58405865436609	8.44746682804865	8.34224055981325	0.204331392712959	0.232067930609599	0.541638955728781
Merged-chr10-88204460-3	chr10	88204366	88204566	+	711.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026070, intron 2 of 6)	MERVL_2A-int|LTR|ERVL	3369.0	NM_027487	67282.0	Mm.208465	NM_026070	ENSMUSG00000020056	Washc3	2900091E11Rik|5730495F03Rik|Ccdc53	WASH complex subunit 3	protein-coding	3.65756556726754	3.6757626688171	3.658095943986	3.79747959122517	3.33630245758812	3.23912531864847	3.37880381814758	3.44683101725492	-1.22885486822154	0.0164552780882868	0.112083276463748
Merged-chr3-84345576-3	chr3	84345481	84345681	+	885.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34340.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	3.63360723994562	3.26294725198881	3.07221109011461	3.49712025536953	3.28690240540334	3.31710343174456	3.42397361325987	3.38173931764524	-0.128524529398458	0.81464603873436	0.928439522713521
Merged-chr9-40577366-4	chr9	40577252	40577452	+	966.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45969.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	4.93779950326398	4.82785113481639	4.97042454249501	4.70640151655166	4.69496813194476	4.35395480833035	4.84886986591911	4.4749772924418	-0.509456836180432	0.156093480529733	0.441990326602117
Merged-chr6-116666280-4	chr6	116666189	116666389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	L1MA4|LINE|L1	7547.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	6.0608612008472	5.97209885138028	5.8610832387966	5.68202731041136	5.90524899797757	6.44383465004092	5.96777671007057	6.05759239990797	0.336496532988418	0.199353820918137	0.501227323441017
Merged-chr4-134828092-3	chr4	134827962	134828162	+	773.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001355501, exon 4 of 9)	exon (NM_001355501, exon 4 of 9)	25283.0	NM_001355501	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	3.4277285382071	3.24731817396917	3.5229099520869	3.34000722065646	3.18263702711762	2.91602611457159	2.94958352368744	3.0907774379696	-1.33975956533139	0.024434801772438	0.146118184941642
Merged-chr7-19822783-4	chr7	19822682	19822882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033601)	promoter-TSS (NM_033601)	-27.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	6.54562127284813	7.19972545819579	6.77885893091564	6.57488983681965	7.02319638739054	6.91234645511969	6.7158572875568	6.21489667462416	-0.0614051563410223	0.818288446766746	0.930311675064052
Merged-chr12-76378708-2	chr12	76378608	76378808	+	825.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178744, intron 1 of 1)	ID_B1|SINE|B4	8442.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	2.99060903952864	2.9453932765739	3.21412797978009	2.95151461201129	2.96605736036311	2.82674554122304	3.03907818640991	3.04893656746917	-0.21516015654981	0.715903048007271	0.886371813543908
Merged-chr14-32093812-4	chr14	32093641	32093841	+	831.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145460, intron 3 of 7)	intron (NM_145460, intron 3 of 7)	8013.0	NM_145460	218885.0	Mm.202257	NM_145460	ENSMUSG00000021906	Oxnad1	2410002F01Rik|AW492292|BC019806	oxidoreductase NAD-binding domain containing 1	protein-coding	3.79174861546499	3.80600989767491	3.7923024783336	3.62727680920607	3.61015444732807	3.69750200692005	3.72726452699409	3.63527312061694	-0.253978154707895	0.58235095410295	0.816519074787564
Merged-chr11-71253560-2	chr11	71253460	71253660	+	984.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027858, intron 7 of 12)	intron (NR_027858, intron 7 of 12)	-22827.0	NM_001040696	637515.0	Mm.390402	NM_001039680	ENSMUSG00000070390	Nlrp1b	Nalp1b	NLR family, pyrin domain containing 1B	protein-coding	2.12593783782478	2.08284144451605	2.1260971118511	1.85967745066346	2.55504111474958	2.87827484153662	2.74766327816566	2.81458469541009	6.69480210436436	2.51876281498267e-10	1.81460544947015e-08
Merged-chr5-135935028-4	chr5	135934935	135935135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018871)	promoter-TSS (NM_018871)	-394.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	7.32844880379299	7.26413333349616	7.07117281398345	7.06824911743237	7.39808163342808	7.60282996656753	7.29321832675493	7.29369567590434	0.297463269038582	0.114612298447429	0.374494527689567
Merged-chr18-36454498-4	chr18	36454378	36454578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026027)	promoter-TSS (NM_026027)	17.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	5.4412984416514	5.63513035137896	5.38346923436244	5.54927233638485	5.49973179620075	5.7750023536801	5.23273463673746	5.43844962500871	-0.0232005293153022	0.934872026409683	0.97635719558922
Merged-chr1-185204060-4	chr1	185203946	185204146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163754)	promoter-TSS (NM_001163754)	-122.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	8.14563752527061	8.21812811494862	8.18396229060495	8.10121675491203	8.28915510682117	8.43251343075524	8.42139627011821	8.1415798514484	0.209477599897918	0.182446984996491	0.4789729629722
Merged-chr4-55598204-4	chr4	55598091	55598291	+	899.1416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65716.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.14394222996241	4.18130174998896	4.3255511440239	4.08979566473685	4.30052482300793	3.93792723227766	4.56829521064815	4.40435947035692	0.351667125345833	0.390094250911631	0.690245822100553
Merged-chr2-71813009-3	chr2	71812912	71813112	+	654.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008397, intron 1 of 25)	intron (NM_008397, intron 1 of 25)	26073.0	NM_001277970	16403.0	Mm.225096	NM_008397	ENSMUSG00000027111	Itga6	5033401O05Rik|AI115430|Cd49f|VLA-6	integrin alpha 6	protein-coding	3.62555321946516	3.39355211412675	3.90045502045042	3.51220954819666	3.68963667087206	3.51823128128377	3.44983686578316	3.27483091868496	-0.377256298521531	0.47381010311642	0.751365889135324
Merged-chr3-142560044-1	chr3	142559944	142560144	+	1000.0	f0_c57.idr	promoter-TSS (NM_018734)	promoter-TSS (NM_018734)	0.0	NM_001289492	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	4.05622960588831	4.74877560636911	4.00617207411539	3.65131908255404	4.40418137396369	4.32651773662226	3.88291198022983	3.77988785979348	-0.135902495651796	0.796088016360896	0.921048550381201
Merged-chr17-55945335-4	chr17	55945233	55945433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146249)	promoter-TSS (NM_146249)	-74.0	NM_146249	240120.0	Mm.441018	NM_146249	ENSMUSG00000062101	Zfp119b	-	zinc finger protein 119b	protein-coding	6.48489006173079	6.56613151304774	6.56857662455386	6.0261788111322	6.59132291436379	6.89441686398765	6.53496472406245	6.78304129850869	0.424759201834151	0.0770847857323992	0.300170576270389
Merged-chr18-65490636-4	chr18	65490633	65490833	+	971.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	59736.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	3.92072101312955	3.67544761146498	4.16956185640831	3.82414495790891	3.44337523516261	3.670705649764	3.53983578639648	3.82397413820385	-0.857120553379999	0.0806919831177014	0.308131688108094
Merged-chr7-127770823-3	chr7	127770684	127770884	+	937.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198424, intron 1 of 1)	intron (NM_198424, intron 1 of 1)	969.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	3.40216397666532	3.23637165209422	3.72410952294713	3.5852779321795	3.50173091215784	3.69055661483734	3.44905996879454	3.76824483377557	0.330623280431846	0.519864671786407	0.78036882925248
Merged-chr5-100636979-4	chr5	100636873	100637073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37283.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	5.41359512345925	5.36694404333258	5.5545188157287	5.31465423541861	5.86461852266648	5.01291682436184	5.62752055138825	5.83378218128874	0.391933619296866	0.207240852550153	0.511181071672855
Merged-chr11-106076504-4	chr11	106076402	106076602	+	965.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8400.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	5.80669489527391	6.01065606120344	5.00077045716608	5.70849239161901	5.81714154305495	5.81071919541887	5.77805364711945	5.54957051878738	0.0944065152804317	0.763229142586575	0.907128857776656
Merged-chr15-11407573-4	chr15	11407458	11407658	+	947.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7900.0	NM_033074	110960.0	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding	4.41513720106538	4.51941058139496	4.68349926335376	4.89502401596563	5.14750033787402	4.81796602897538	4.91455086431511	4.90187577842202	0.60519074157388	0.0894596777336565	0.326546174430971
Merged-chr10-4041985-4	chr10	4041891	4042091	+	973.7083130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 17 of 27)	intron (NM_001170785, intron 17 of 27)	68916.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	3.68904301926873	4.03060096663109	3.8681222166927	3.58818593381983	4.5115286598362	4.33825837115309	4.23253460247374	4.20752999095192	1.42454792491748	0.00085590281841582	0.0118748300707134
Merged-chr17-72858403-4	chr17	72858304	72858504	+	816.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20356.0	NM_001357371	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	3.84911814093577	3.89849955743152	3.84968083944785	3.9347653943828	3.7189551035808	3.56988228502784	4.01227373139253	3.51706969954874	-0.486489708741943	0.302149090365728	0.614441177736762
Merged-chr18-31634980-4	chr18	31634878	31635078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357555)	promoter-TSS (NM_001357555)	-150.0	NM_001357555	269003.0	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	10.5469337381203	10.5862494008508	10.6976529140272	10.685386421029	9.77341168490871	9.9005012902225	10.09882627548	9.7969299812994	-0.889049738202731	2.75261503522373e-10	1.97309552459405e-08
Merged-chr13-106639187-4	chr13	106639091	106639291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	297767.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	6.53731445846716	6.41902542490581	6.37980533483922	6.97087507952832	6.41739745789501	6.68159372411887	6.78462647288521	6.71822402111175	0.0460155728963594	0.850549107501987	0.943633424218446
Merged-chr2-146512189-4	chr2	146512082	146512282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033348)	promoter-TSS (NM_001033348)	-178.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	9.59573209189838	9.7276813811293	9.70727637400194	9.83718351861786	9.55320002861152	9.6982106611515	9.88325651844926	9.56240889208845	-0.051222443234668	0.729583806253589	0.892730840888488
Merged-chr13-63568033-4	chr13	63567916	63568116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001328514, intron 1 of 23)	CpG	-2281.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	7.21541115243676	7.38429360670839	7.47457066661018	7.34204784931369	7.45772118459317	7.56478701088656	7.56977168652474	7.45062934232874	0.204051543335996	0.240043840682638	0.550469043090672
Merged-chr10-18023014-4	chr10	18022912	18023112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359560)	promoter-TSS (NM_001359560)	78.0	NM_001359560	73112.0	Mm.276041	NM_028440	ENSMUSG00000078453	Abracl	1700028I04Rik|3110003A17Rik	ABRA C-terminal like	protein-coding	7.5743822701018	7.66905409609488	8.12797116295712	7.37353266228879	7.29162868352459	7.91951520235981	7.33646188712154	7.62276989380993	-0.194682342115733	0.409074549069672	0.704791463679563
Merged-chr2-45270764-3	chr2	45270664	45270864	+	875.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-153322.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	3.6174854509575	3.530825602051	3.71919221268888	3.5820246885821	3.67935848791983	3.78654377955646	3.43766159221792	3.50626965275334	0.00157652717994084	0.99739310959279	0.99896497879051
Merged-chr9-45961970-4	chr9	45961849	45962049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6700.0	NM_172257	214597.0	Mm.379345	NM_172257	ENSMUSG00000034908	Sidt2	B930096O19|BC023957|CGI-40	SID1 transmembrane family, member 2	protein-coding	6.94109894042365	6.92253696484327	7.17664761314636	6.97042322924514	6.87770554430342	6.90965858624228	6.72815920895107	6.9113788674412	-0.200832746099174	0.300392125090321	0.612422387893833
Merged-chr7-35172008-4	chr7	35171909	35172109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14376.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	5.88105852783053	6.02706223658773	6.11497451062622	5.87652135226763	5.83845008649335	5.93648182608836	5.82887171797324	5.90093812801212	-0.15501435427613	0.52183407022228	0.781691501355061
Merged-chr14-21831183-5	chr14	21831109	21831309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011695)	promoter-TSS (NM_011695)	-352.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	7.44234516761613	7.90306564309897	7.17657483106893	7.68880985449973	7.69508703621534	7.8156991218097	8.03684886938094	7.76324535523507	0.31839558555527	0.129098269834698	0.39980359156648
Merged-chr1-80665922-4	chr1	80665814	80666014	+	989.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285927)	promoter-TSS (NM_001285927)	-562.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	5.47001458529141	4.90702252282554	5.57305449282896	5.76584443218865	5.03154509425341	5.24553003925872	5.3893735523214	5.13482372849238	-0.495893034355904	0.138179738963276	0.413568902517326
Merged-chr12-112950544-4	chr12	112950442	112950642	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8400.0	NM_001316724	66174.0	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	5.8858790301966	6.092516754465	5.93268265911247	6.23387973704711	5.82001850702326	5.96667352046086	6.16352535996809	5.40931834948678	-0.298731151200008	0.279983965816466	0.592084693628754
Merged-chr18-63709296-4	chr18	63709186	63709386	+	957.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014981, intron 1 of 27)	intron (NM_001014981, intron 1 of 27)	591.0	NM_001014981	104082.0	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	4.5348678928712	4.45341642491002	4.49312284220211	4.52330415050657	4.89664140786157	4.53391004439381	4.84087973147643	4.49029713159512	0.458669773047524	0.198648459498862	0.500252890245534
Merged-chr4-141655987-4	chr4	141655891	141656091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	8124.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	6.45682952994176	6.70226233476202	6.87213753321601	6.81686042746949	6.73190925120463	6.61750294208935	6.77045762768014	6.9554966980281	0.0656791732941876	0.75709967113848	0.904554066545557
Merged-chr18-73745090-4	chr18	73744998	73745198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053255, intron 2 of 3)	intron (NM_053255, intron 2 of 3)	9381.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	6.56118166497086	6.1772866567593	6.38475442224232	6.59252997214958	6.14905999729667	6.18076277514263	6.16637397750929	6.25255763791388	-0.393072904456322	0.0874385680458632	0.322502726855605
Merged-chr13-74390442-1	chr13	74390342	74390542	+	855.0	f0_balb.idr	Intergenic	Intergenic	-13876.0	NM_001081680	238722.0	Mm.461254	NM_001081680	ENSMUSG00000069184	Zfp72	Zfp74	zinc finger protein 72	protein-coding	3.6019448856934	3.95762131836872	4.05506070184522	3.63594864516847	3.98815845704293	3.65793624902858	3.80755631938598	3.91881811268375	0.102298636368328	0.82824905007524	0.934114195210036
Merged-chr15-59077345-3	chr15	59077234	59077434	+	633.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 1 of 14)	intron (NM_144800, intron 1 of 14)	4692.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	3.63864252605397	3.00020981171401	3.16842523417108	3.11406020059725	2.83234952426827	2.88175422959538	2.83884531486805	3.10838390888463	-1.38027632652602	0.0320505584244363	0.174933260617082
Merged-chr11-22952857-4	chr11	22952770	22952970	+	808.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361661, intron 2 of 2)	intron (NM_001361661, intron 2 of 2)	-19135.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	4.11756022430408	3.98644390717569	4.16118314211959	4.40663307844371	3.94271810018599	3.99994606071724	3.57289354439031	3.70806555141301	-1.00606131436952	0.0301506703182822	0.167820969861198
Merged-chr6-128135877-4	chr6	128135743	128135943	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	7735.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	4.86301053864289	4.77792827362301	5.15714654880134	4.88735850928027	4.97363405903652	4.75665100343552	4.87654124458704	4.96597001816788	-0.0443873176829079	0.891507430924817	0.959385213525176
Merged-chr9-13298064-4	chr9	13297948	13298148	+	994.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51092.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	5.43244464761792	5.17927787060688	5.04870707671774	5.06080319045308	5.13726311885583	5.2896458998918	5.02429856079028	4.85982223729383	-0.175692398170391	0.577994678011799	0.814391164493464
Merged-chr6-89643967-4	chr6	89643865	89644065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001178058)	promoter-TSS (NM_001178058)	-23.0	NM_001178060	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	7.4842070864312	7.29683304784864	7.06378528532045	7.30985144743272	7.21911185087936	7.10967951479132	7.31688134817438	7.32830776694428	-0.0695096889417671	0.712470970896638	0.884883193843292
Merged-chr11-75584880-3	chr11	75584785	75584985	+	741.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3194.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	3.72783571236508	3.37386480193992	3.48948071149484	3.29331214943829	4.06589799931354	3.95782092657051	3.86578202705714	4.36025385586812	1.80763460489726	0.000147496083043969	0.00281207989901167
Merged-chr3-152114989-3	chr3	152114887	152115087	+	981.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016867, intron 3 of 5)	intron (NM_016867, intron 3 of 5)	50913.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	4.32377532484094	4.69710113549298	4.6524336166903	4.62588640260078	3.87635572030586	3.75104991048514	3.68315531098592	3.75899521015795	-2.18116265248109	1.74806432688773e-06	5.79801820706158e-05
Merged-chr15-78851962-4	chr15	78851878	78852078	+	937.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025622, intron 2 of 3)	intron (NM_025622, intron 2 of 3)	3551.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	4.50580903224895	4.55029859830288	4.30498143759954	4.49576818169693	5.15370937862862	5.43318813989777	4.98132469814782	4.86878865635744	1.3280826382961	0.000131472802957038	0.00255406731486872
Merged-chr5-38082720-4	chr5	38082619	38082819	+	945.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	43489.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	4.57576106877937	4.56637386430204	4.69936059683255	4.69330541192362	5.0010535561052	4.75195067632386	4.92272659755539	4.73472562925044	0.469733089144599	0.160467300097818	0.448621443584546
Merged-chr16-36940405-4	chr16	36940319	36940519	+	984.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008225, intron 3 of 13)	intron (NM_008225, intron 3 of 13)	5436.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	5.50772642597068	6.30858555878453	5.22612733048429	4.43207708513617	6.08279507527781	5.79374730848001	5.75643418357178	5.03493385889249	0.253109469132987	0.713973330607932	0.885595673073834
Merged-chr11-61866507-3	chr11	61866415	61866615	+	876.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11423.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	4.01446081079804	3.54527335552566	3.78315294456182	3.83423124953834	3.58529059590726	3.79567041356624	3.71621177495236	3.87874011794869	-0.180960357341827	0.700620526529501	0.879297715090228
Merged-chr2-128698858-4	chr2	128698754	128698954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008587)	promoter-TSS (NM_008587)	-61.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	7.02530191675145	6.66202479354334	7.13038964600689	7.31600678266607	6.74721081874996	6.89127831409956	6.95454958156442	6.62940971775395	-0.356008189530923	0.114096874553046	0.373616480370396
Merged-chr15-90310509-4	chr15	90310408	90310608	+	985.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-43202.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	5.77902612586855	5.50515619681738	5.23062484015725	5.88332913976886	5.2529050770326	5.19771717302796	5.20488254027291	4.89323827322852	-0.870122976886321	0.00594572304541643	0.0539121809744836
Merged-chr6-48555248-4	chr6	48555149	48555349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177736, intron 1 of 2)	RLTR42|LTR|ERVK	450.0	NM_177736	243371.0	Mm.290764	NM_177736	ENSMUSG00000073096	Lrrc61	BC027309	leucine rich repeat containing 61	protein-coding	6.05014417744292	5.96259471500554	6.2404071463553	6.41427887599135	6.28691914888535	6.56302193427198	6.69993643012851	6.31167306121589	0.414871263142255	0.0929789309837979	0.333587406463926
Merged-chr15-78947851-4	chr15	78947726	78947926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_138579, exon 1 of 24)	5' UTR (NM_138579, exon 1 of 24)	102.0	NM_001039155	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	7.42301178631093	7.45768513862931	7.3465564609327	7.38096934050137	7.1408603245573	7.23180014364013	7.0922751005322	7.14668570549794	-0.338043481247112	0.0535864761442857	0.241629193138818
Merged-chr15-82417727-4	chr15	82417633	82417833	+	811.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10539.0	NM_010005	13101.0	Mm.174372	NM_010005	ENSMUSG00000094806	Cyp2d10	AI303445|Cyp2d|P450-2D	cytochrome P450, family 2, subfamily d, polypeptide 10	protein-coding	3.89968391159785	3.87960342372515	3.61925558009614	3.91356150209808	4.18393533842933	3.79916701951116	4.06976945657854	4.1698202843104	0.623986889159263	0.158028160285546	0.444930438707523
Merged-chr2-120134926-4	chr2	120134811	120135011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 2 of 5)	intron (NM_133838, intron 2 of 5)	19664.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	6.63170117786428	6.38808819088224	6.17199122747719	6.49217497487051	6.46350114451934	6.32864580335013	6.55389541176181	6.74144331575772	0.138584403406215	0.543367708959821	0.794453303125343
Merged-chr9-20997650-2	chr9	20997550	20997750	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-5087.0	NM_023167	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	3.84809976484999	3.83850870130161	3.9002559887633	4.21078076205009	3.78093591079684	4.02174405506697	3.72478011199058	4.20995773989439	-0.0795271375906125	0.864044809572498	0.948941468277928
Merged-chr5-139381446-3	chr5	139381347	139381547	+	906.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	808.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	4.20953205520097	3.84074696488913	3.68544558080855	4.0534510050439	4.01343738243938	3.91662186815319	3.83544969489399	3.99623783516965	-0.0615923238636969	0.8906928146915	0.959104227034594
Merged-chr13-40953001-4	chr13	40952906	40953106	+	905.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	35372.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	4.29148077190982	4.83033217624769	4.60688250230944	3.93801540201542	5.24222801634202	4.65826076156137	4.62400161449377	4.43349328640699	0.709041977381011	0.110387843024158	0.366908350152529
Merged-chr3-90465407-5	chr3	90465165	90465365	+	958.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008727, exon 1 of 22)	exon (NM_008727, exon 1 of 22)	601.0	NM_008727	18160.0	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	3.17100324429218	3.20564141512193	3.33477597488973	3.17278411377369	2.97396552355096	3.15910545457032	3.10099349856176	3.11043466611775	-0.545948279963597	0.328057168392283	0.639432093460603
Merged-chr4-149793832-3	chr4	149793716	149793916	+	997.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19549.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	3.68582571983215	3.35509592261653	3.94211525464175	3.40120677726034	4.54430911978812	4.68678260387734	4.93361145470826	5.0095087293137	3.08091339900984	9.1413207158094e-12	8.28879066535793e-10
Merged-chr12-36042548-4	chr12	36042448	36042648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025359)	promoter-TSS (NM_025359)	-70.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	6.89665270570671	6.41016461690411	6.78357107693129	7.08305582219709	6.43275371544563	6.2013365174526	6.06053150172496	6.13246568416619	-0.879914458486296	0.000401329385536009	0.006458563041616
Merged-chr1-75192070-4	chr1	75191970	75192170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026187)	promoter-TSS (NM_026187)	-60.0	NR_109938	245860.0	Mm.238266	NM_001003917	ENSMUSG00000033124	Atg9a	AU019532|Apg9l1|Atg9|Atg9l1	autophagy related 9A	protein-coding	8.46770299833664	8.78234304827868	8.57308790134047	8.68907976335247	8.69709047142329	8.79301664980648	8.8355696284386	8.60503977797218	0.122297131206186	0.429915440388756	0.720635978674715
Merged-chr2-60123659-4	chr2	60123572	60123772	+	883.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	2068.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	3.70769372094018	3.69247949532308	4.22370036522389	4.34390842979491	3.91714106777957	4.39328417600243	4.28575868364406	4.08669605022396	0.359029597794478	0.458643823724511	0.741444667928389
Merged-chr10-81433061-4	chr10	81432952	81433152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5879.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	7.76800857421496	7.8387803591942	7.40478313138791	7.83812251051718	7.8045668806438	7.89025263155121	8.22611585594146	7.8105787424878	0.276321721473686	0.152933274618522	0.437419043569042
Merged-chr9-78109107-4	chr9	78108982	78109182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023605)	promoter-TSS (NM_023605)	-17.0	NM_001081490	71538.0	Mm.28584	NM_023605	ENSMUSG00000001366	Fbxo9	9030401P18Rik|AA986398	f-box protein 9	protein-coding	7.84852409570686	7.64392440263964	7.43035973292301	7.7471961684432	7.72239296864248	7.73348299502872	7.86856284787517	7.73836039595627	0.112394955571997	0.521736750158682	0.781611351410031
Merged-chr11-33932075-4	chr11	33931990	33932190	+	973.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190886, intron 1 of 7)	intron (NM_001190886, intron 1 of 7)	-30923.0	NM_031169	16533.0	Mm.6206	NM_031169	ENSMUSG00000020155	Kcnmb1	BKbeta1	potassium large conductance calcium-activated channel, subfamily M, beta member 1	protein-coding	4.84949488890911	4.56924776788242	4.10856272042581	4.78692290526815	4.58641744876535	4.80649331723402	4.4897413764945	4.81346099721092	0.127472171100416	0.745159404833595	0.899431814827356
Merged-chr2-154790900-4	chr2	154790775	154790975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001139511)	promoter-TSS (NM_001139511)	-235.0	NM_001139512	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	8.30748698257774	8.39160837421434	8.10317774801181	8.06260576580446	8.53529783644734	8.60374856545705	8.4508563835169	8.21083909197429	0.303903296079336	0.0780925333982649	0.302242859809423
Merged-chr6-99188639-3	chr6	99188533	99188733	+	671.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	77882.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	3.87544701203306	4.3532897335853	3.92431949039291	3.68779225908371	4.03556483354828	3.52510947072319	3.59019686204933	3.66058462897567	-0.718211094039609	0.166073801977966	0.457138132665884
Merged-chr4-124705284-4	chr4	124705124	124705324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010213, intron 1 of 5)	intron (NM_010213, intron 1 of 5)	4525.0	NM_010213	14201.0	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	6.16588958331801	6.02433665016347	5.89526538146437	5.43031147946896	6.21226104383748	6.11661909880534	6.03816941767786	5.79424378378028	0.260950587935595	0.358032151327268	0.664095322276096
Merged-chr6-124273395-4	chr6	124273289	124273489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31262.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	7.85695817165676	7.44890356114609	8.00851170716327	7.46945137168004	7.01043916968334	7.47593422063563	7.48891712212036	7.15541797793626	-0.556822634384173	0.0120938505389011	0.0904706450350435
Merged-chr3-9002725-4	chr3	9002631	9002831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	1473.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	5.14671364913475	5.48129995163519	5.51336720104336	5.59183497724814	5.15707009901967	5.17894613021246	5.48556886960837	5.7049767935532	-0.101583211802438	0.741431542530815	0.898179889473609
Merged-chr11-4096768-4	chr11	4096660	4096860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_144520)	TTS (NM_144520)	-1329.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	8.55433860426298	8.63711632921888	8.51267825864152	8.24118362134273	8.66495874088303	8.67094897434966	8.6197424676044	8.15566322334452	0.0712697083532714	0.699700700020654	0.878897269268221
Merged-chr11-17953489-3	chr11	17953389	17953589	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131916)	promoter-TSS (NR_131916)	386.0	NM_026576	68145.0	Mm.178684	NM_026576	ENSMUSG00000016984	Etaa1	5730466H23Rik|AA672646	Ewing tumor-associated antigen 1	protein-coding	5.92251037594768	5.6867655821925	6.59289206128719	6.19143701699163	6.00153443412854	5.90097757688154	6.02503333133017	5.94238069774824	-0.268827175997326	0.339683726587262	0.648832933028295
Merged-chr7-44589333-2	chr7	44589231	44589431	+	670.833374	f0_balb.idr|f0_c57.idr	Intergenic	CpG	-1555.0	NM_008422	16504.0	Mm.40312	NM_008422	ENSMUSG00000062785	Kcnc3	KShIIID|Kcr2-3|Kv3.3	potassium voltage gated channel, Shaw-related subfamily, member 3	protein-coding	3.84134972367369	3.86331135205485	3.79031498159037	3.87427016446745	3.91203351993279	4.06080779565615	3.6091069466194	3.88918857620987	0.0916520571092898	0.837490331441681	0.938339070778508
Merged-chr4-47235025-4	chr4	47234936	47235136	+	941.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 2 of 39)	intron (NM_009928, intron 2 of 39)	27024.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	4.72554753025431	4.52107330149375	4.36659522197103	4.77833491377731	4.7457633886596	5.04696381932272	5.15726353771272	5.00407633733061	0.75026889441669	0.0336936733751233	0.180879551788815
Merged-chr11-62005083-4	chr11	62004993	62005193	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	48330.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	5.17591856282415	5.48420670534653	5.33410709465192	5.3434288294671	5.5744098726603	5.09871270244381	5.04792034251563	5.52196770953918	0.00692724385094726	0.982094296729674	0.993573193675204
Merged-chr9-109046449-4	chr9	109046340	109046540	+	832.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357932, intron 2 of 5)	(CCTG)n|Simple_repeat|Simple_repeat	-4656.0	NM_001357935	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	3.94003702226773	4.22906420715091	4.23013612841096	3.34939397331663	4.12378848855488	4.52359719864196	4.12183632864283	4.18344097435978	0.679110770149946	0.17249524706618	0.46597742574381
Merged-chr9-78527515-4	chr9	78527401	78527601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45777.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	8.27117311936371	8.54778955285778	8.50136030686797	8.21416703537828	8.23046113966453	8.47851287732761	8.01649172563785	8.10912721963599	-0.214510016167027	0.232003566396964	0.541621692185733
Merged-chr18-68337447-4	chr18	68337350	68337550	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013596)	promoter-TSS (NM_013596)	-153.0	NM_013596	17203.0	Mm.8003	NM_013596	ENSMUSG00000007480	Mc5r	-	melanocortin 5 receptor	protein-coding	4.68145737091871	4.72844802442717	4.98562869576982	4.54050429122598	4.42214433724236	4.41307042715991	4.62180336824659	4.75309056638879	-0.381993357452142	0.297315798033315	0.60941334041274
Merged-chr13-101850278-4	chr13	101850186	101850386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-82069.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	5.1791097561566	5.23980215820274	5.24396871179605	5.61212640274532	5.25362362344499	4.64662906373937	5.24859864455634	5.66029296226934	-0.161225837612204	0.64864506521103	0.852374306110723
Merged-chr14-31608947-4	chr14	31608834	31609034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019975, intron 16 of 16)	intron (NM_019975, intron 16 of 16)	-31551.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	5.44976273428851	5.49077899384756	5.56322673775848	5.47579575834056	5.86652578111214	5.65506508449843	5.68617572584333	5.44690927071702	0.320644877927158	0.231552391585658	0.54111200698099
Merged-chr18-74402551-3	chr18	74402450	74402650	+	958.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30|LTR|ERV1	-40069.0	NM_201600	17919.0	Mm.260098	NM_008661	ENSMUSG00000025885	Myo5b	AI661750|mKIAA1119	myosin VB	protein-coding	4.02419812173685	3.65122425368802	3.70635466550325	3.89497840454762	3.18356655842366	3.7732463767404	3.27381760994936	3.75478462040142	-0.975523413050985	0.0744355007944893	0.294055367088356
Merged-chr12-99999659-4	chr12	99999544	99999744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	ORR1C1|LTR|ERVL-MaLR	35145.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	6.05414823547538	6.00863663742292	5.73467444302196	5.80584261885085	5.41826488805919	5.48412235634992	5.60480195656771	5.33408777621433	-0.739961052160164	0.0056725896708282	0.0521867985239602
Merged-chr9-77825485-3	chr9	77825382	77825582	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70947.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	4.14645359462116	3.81462036167	3.82912883217692	3.85297993777328	5.1526756124208	5.42323353573995	5.03969866496426	5.03377565423521	2.78397034900708	6.02109570008264e-13	6.7174854363038e-11
Merged-chr2-89296655-3	chr2	89296560	89296760	+	716.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146789, exon 1 of 1)	exon (NM_146789, exon 1 of 1)	608.0	NM_146789	258785.0	Mm.377689	NM_146789	ENSMUSG00000075094	Olfr1230	MOR237-1	olfactory receptor 1230	protein-coding	4.11177214482739	4.18305974294785	4.15171267331521	4.24208333008462	3.05854216541024	3.27837275045104	3.22820425654495	3.44850491085349	-3.4866394722415	3.53080649323538e-08	1.67994168036097e-06
Merged-chr9-35268494-3	chr9	35268393	35268593	+	949.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175411)	promoter-TSS (NM_175411)	612.0	NM_028040	71989.0	Mm.273515	NM_028040	ENSMUSG00000032044	Rpusd4	2410001E19Rik	RNA pseudouridylate synthase domain containing 4	protein-coding	3.72701395114079	3.70524278574176	3.62611339038628	4.05019674503303	3.52137260517898	3.37599371180654	3.32075213881866	3.62408591611645	-1.06763958385847	0.0384406150854449	0.196727908616456
Merged-chr7-24884508-4	chr7	24884398	24884598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360119)	promoter-TSS (NM_001360119)	-94.0	NM_001360128	20085.0	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	8.40896600467766	8.59932764413527	8.2648096915297	7.89170475042228	8.44379709023211	8.61346836065388	7.90216469709633	7.9642144699984	-0.0565304404522174	0.805434806656861	0.925178766347246
Merged-chr5-3647197-4	chr5	3647092	3647292	+	861.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026033, intron 1 of 4)	intron (NM_026033, intron 1 of 4)	744.0	NM_026033	67210.0	Mm.178424	NM_026033	ENSMUSG00000007415	Gatad1	2310031E19Rik|2810047M21Rik|8430439A17Rik|9130430G15Rik|B330017N08Rik|Odag	GATA zinc finger domain containing 1	protein-coding	3.8064356428057	3.90414124215201	4.56973231838925	4.06221571942774	3.95230637158288	3.98636310862156	4.30414366860694	3.80489668954045	-0.240359052414387	0.612148505849302	0.832680684364583
Merged-chr3-144561755-4	chr3	144561665	144561865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355234, intron 1 of 6)	MTE2b|LTR|ERVL-MaLR	8451.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	5.22494023527723	5.25281292977214	5.59084638156878	6.06554344866613	5.69063808892612	5.22080165598073	5.80115242021979	5.80483273646699	0.0837638424693981	0.805932265664629	0.925317663285668
Merged-chr15-78257392-4	chr15	78257299	78257499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 7 of 9)	RSINE1|SINE|B4	12588.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	6.04761409517577	5.99251009371953	6.20239736807838	6.01169785995961	5.79389392837775	5.78953251459536	5.97623775908946	5.86823552534539	-0.32488510268034	0.176285365756059	0.471307205534908
Merged-chr9-118486515-3	chr9	118486421	118486621	+	873.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010136)	TTS (NM_010136)	8332.0	NM_010136	13813.0	Mm.200692	NM_010136	ENSMUSG00000032446	Eomes	C77258|TBR-2|Tbr2	eomesodermin	protein-coding	3.60819663445573	3.72833337979152	3.16909160294285	3.67478957355167	3.40885644432766	3.67148735163684	3.99708534879817	3.49520813787562	0.292533943151553	0.593209745639995	0.822553370861762
Merged-chr7-120098057-4	chr7	120097903	120098103	+	712.766663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4423.0	NM_145586	233806.0	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	3.15684157046088	3.32753544522936	3.5086392418147	3.32734548452819	3.30282135638733	3.57187367718783	3.59130165926447	3.28343363006948	0.3677231422797	0.484533949584871	0.7586423967247
Merged-chr2-71344091-4	chr2	71344004	71344204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 2 of 17)	intron (NM_172436, intron 2 of 17)	23450.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	6.07736621972985	5.69221424751815	5.86120455359955	6.03397394571657	6.10830653417389	6.1052602448002	5.90017732154075	5.67936856462668	0.0557476867315152	0.829981871862471	0.93469313594334
Merged-chr2-128731614-4	chr2	128731493	128731693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 2 of 18)	intron (NM_008587, intron 2 of 18)	32678.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	6.11802532723723	5.94046172084163	6.56423466950941	6.29228246399851	6.02867778979101	6.37391306422876	5.88895401192381	5.96207657397488	-0.269953083311448	0.304615585045422	0.617129638753006
Merged-chr10-99198069-4	chr10	99197973	99198173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027740)	TTS (NM_027740)	-65158.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	5.9063056144199	5.68797920329424	5.95012125056501	5.9045332180136	5.52074891308724	5.94417631483556	5.41174728418108	5.78943884619071	-0.315856610233732	0.242018764026749	0.552632285533811
Merged-chr3-95672663-4	chr3	95672561	95672761	+	940.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13940.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	5.02910242114312	4.91543274962461	4.89493446247129	5.1165111673659	4.88582215721584	4.7061717233204	4.63998780125317	4.99413257003132	-0.366468249039362	0.265688784466891	0.577343448210064
Merged-chr13-93755318-4	chr13	93755219	93755419	+	957.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MRLTR33|LTR|ERVK	-16360.0	NM_009712	11881.0	Mm.300178	NM_009712	ENSMUSG00000042082	Arsb	1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1	arylsulfatase B	protein-coding	5.08024700524069	5.52233761757673	5.3315361836699	5.65594152627471	5.15032817355243	4.95156252605457	4.79098273621823	5.07765498851659	-0.788187060585592	0.014928134085945	0.104460249322009
Merged-chr12-5213885-4	chr12	5213795	5213995	+	896.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	161787.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	4.68650250773231	4.17544396823107	4.48665722959574	5.17996587936733	4.3928336374786	4.52754285775941	4.62762540824689	4.60774478472261	-0.362475395465621	0.394734269495937	0.693696530342229
Merged-chr6-116037434-3	chr6	116037343	116037543	+	822.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 4 of 5)	intron (NM_177412, intron 4 of 5)	-42438.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	3.49964307078844	3.26920508206121	3.17675323261121	3.72370475686343	2.87154361185313	3.15861242596158	3.03874436396707	3.17517314435533	-1.51468528175903	0.0129482504737796	0.0947510558726391
Merged-chr13-100642645-4	chr13	100642543	100642743	+	993.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283011, intron 4 of 17)	B2_Mm2|SINE|B2	8418.0	NM_001044371	19356.0	Mm.248489	NM_011233	ENSMUSG00000021635	Rad17	MmRad24	RAD17 checkpoint clamp loader component	protein-coding	4.89202147093037	4.84716851239405	4.18709680238192	4.83457361520367	4.63357115144387	4.76342652084499	5.0270635905007	4.92302480826943	0.234058967358919	0.535557386085433	0.789782650344438
Merged-chr18-53899355-4	chr18	53899249	53899449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 2 of 12)	intron (NM_152809, intron 2 of 12)	37236.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	6.03176052431065	6.07511657872396	5.75289741317585	6.25928287816036	5.90902152136634	5.79407117384002	6.06289321888702	5.89639361016373	-0.220599376715359	0.385919705700457	0.687298864016961
Merged-chr17-81706777-4	chr17	81706677	81706877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	31610.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	5.17928561110309	5.33565773264426	5.54664031944882	5.3654930065676	5.73851835000064	6.00170518950273	5.18951788732451	5.48853542269342	0.476570319887211	0.12137092448097	0.385879088513086
Merged-chr3-96263302-4	chr3	96263148	96263348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033596)	promoter-TSS (NM_033596)	69.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	5.66831777400542	6.40343695800707	6.23423037056508	6.05787682697605	6.67746538703232	6.45027106293909	6.77829480096927	6.57496911112164	0.754054518506574	0.00237487404133158	0.0266710570192396
Merged-chr3-88467285-4	chr3	88467167	88467367	+	813.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-6085.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	4.56056217631132	4.0175288527913	4.01216409668106	3.85706677587355	3.97149558332722	3.97840548445033	4.04262787495748	3.85368784980581	-0.440801177927338	0.336465605490646	0.646456807115791
Merged-chr5-130172941-2	chr5	130172841	130173041	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359233, intron 1 of 7)	B1_Mur4|SINE|Alu	1122.0	NM_001359233	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	3.06154592564454	2.96713180080303	3.06190135344978	2.99548625345801	3.21724850476789	3.23704968252156	3.33667813095106	3.4951176510475	1.16913463909444	0.0317321613458063	0.173756713011243
Merged-chr5-22855258-3	chr5	22855138	22855338	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359998, intron 1 of 3)	intron (NM_001359998, intron 1 of 3)	-108354.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	3.68097683794616	3.46916582395854	3.60379650306501	2.71414876982493	5.6095454225239	5.37634911617888	5.06251819064823	5.34241254265365	5.97789973104643	4.28990877694844e-26	3.11583078402462e-23
Merged-chr13-54207249-4	chr13	54207140	54207340	+	960.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153432, intron 1 of 3)	intron (NR_153432, intron 1 of 3)	15107.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	4.88331423130147	5.27919276032715	5.17523579298211	4.08738072707537	5.29884715323293	4.9478115161792	4.74752906518247	4.59819009785179	-0.00344981356600341	0.993762599002413	0.997702270136287
Merged-chr10-60279491-2	chr10	60279391	60279591	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 1 of 14)	intron (NM_011179, intron 1 of 14)	1863.0	NM_001146121	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	3.37842855852612	3.1013793691516	3.26666064196097	3.20622792094062	3.32212417215663	3.11898962087331	3.13331723275256	3.70553674980996	0.375530743522997	0.505557251777009	0.771488881809541
Merged-chr15-78608990-4	chr15	78608885	78609085	+	954.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 6 of 12)	MIRb|SINE|MIR	11938.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	4.53891609626957	4.34627427136903	4.77101550564261	4.36505127380302	5.08474902692593	4.09650026113086	4.63840517457753	4.99269575736668	0.547913821204952	0.193766920897478	0.494005360598933
Merged-chr1-51334077-3	chr1	51333965	51334165	+	900.638855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045151)	promoter-TSS (NR_045151)	-286.0	NR_045151	442821.0	Mm.118030	NR_045151	ENSMUSG00000101799	9330175M20Rik	-	RIKEN cDNA 9330175M20 gene	ncRNA	4.07798383311332	3.98053327772365	3.74192829511323	4.15115429622468	3.64386431046686	3.91576999661962	3.8316036304991	3.56411372714085	-0.763857885435692	0.101272359639265	0.349273541514549
Merged-chr9-44723153-4	chr9	44723080	44723280	+	948.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153537, intron 4 of 21)	intron (NM_153537, intron 4 of 21)	12018.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	4.46368974871633	5.19136746093532	4.80162507987002	4.43927953685623	4.86977895616045	5.11353808486359	4.58017949470882	4.87049089204392	0.233096923348913	0.547535553525424	0.796913059286089
Merged-chr10-33951296-4	chr10	33951248	33951448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153113)	promoter-TSS (NR_153113)	-89.0	NR_153113	72580.0	Mm.248081	NM_028287	ENSMUSG00000039531	Zufsp	2700019D07Rik	zinc finger with UFM1-specific peptidase domain	protein-coding	6.91077528562426	7.43656327099914	6.99297512800691	7.16487629944922	7.32282895008168	7.25845759546494	7.28790318597154	7.19266704731425	0.162220539975907	0.415988166388581	0.710072021761014
Merged-chr18-38339007-4	chr18	38338940	38339140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011937)	promoter-TSS (NM_011937)	-47.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	7.18889601142996	7.34619854372637	6.65191260055817	7.11521360216337	7.00685569552101	7.22824040215869	7.12093535965616	7.05860806544768	-0.00240649376010188	0.991054544502143	0.996611677733106
Merged-chr10-98972555-4	chr10	98972457	98972657	+	927.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 2 of 21)	intron (NM_001359507, intron 2 of 21)	57405.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	4.73197239905467	5.06489487888372	4.52148180060434	4.87296253288628	4.97113927375345	4.60670464270707	4.78562309321103	4.87655063262135	0.00730558051512415	0.983360284099127	0.993990503512979
Merged-chr11-97051341-2	chr11	97051241	97051441	+	971.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310509, intron 1 of 22)	intron (NM_001310509, intron 1 of 22)	521.0	NM_001081434	71240.0	Mm.190450	NM_001081434	ENSMUSG00000038534	Osbpl7	4933437E18Rik	oxysterol binding protein-like 7	protein-coding	2.99602032895891	3.36700380983704	2.92948065698885	2.68719367493247	3.15758193135039	3.10751179859997	3.1662472200692	3.28586029098477	0.654263429371085	0.290948844531977	0.603238545744905
Merged-chr10-21996906-5	chr10	21996872	21997072	+	959.349976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011361, intron 7 of 11)	intron (NM_011361, intron 7 of 11)	2306.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	3.39220717822479	3.24244290546608	3.00529130078495	2.61076370676266	2.78420582549028	2.98353213510459	2.63378842455333	3.48247762129638	-0.338126942609028	0.648083700976184	0.851973023337718
Merged-chr5-66369174-2	chr5	66369074	66369274	+	861.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310626, intron 8 of 15)	intron (NM_001310626, intron 8 of 15)	-31509.0	NM_001201416	11787.0	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	3.37080829063906	3.14372158607439	3.18015167674374	3.1888027264484	3.3578751825837	3.60308477541453	3.84072657651485	3.68393190751625	1.38556546157976	0.00793947705529281	0.06687067060924
Merged-chr10-93257442-3	chr10	93257344	93257544	+	874.5166630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	53715.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	4.02429036491772	4.22020683965482	4.37660309051352	4.37355248549105	3.83183991280943	3.92690802763955	4.39327573855637	3.91743740128947	-0.589472883804761	0.181124532374335	0.477632746364582
Merged-chr11-120041938-4	chr11	120041867	120042067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198787)	promoter-TSS (NM_001198787)	-186.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	7.74650228465917	7.89181087479421	7.92146183617565	8.1530257957096	7.86033785149998	7.59391421340941	7.96495206641848	7.79797147694687	-0.170967541687144	0.346726856050936	0.654911126389172
Merged-chr5-148820604-2	chr5	148820504	148820704	+	953.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5B|DNA|hAT-Charlie	42641.0	NR_131106	78015.0	Mm.243839	NR_131106	ENSMUSG00000085740	4930505K14Rik	-	RIKEN cDNA 4930505K14 gene	ncRNA	3.00636464128338	3.38330327814715	3.14163235196553	3.07006141031135	3.34853320836444	3.31685418278363	3.41443492158293	3.52569770435021	0.901002727323991	0.095097101569492	0.337405258370032
Merged-chr4-16198927-4	chr4	16198823	16199023	+	912.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 2 of 6)	intron (NR_045765, intron 2 of 6)	34813.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	4.33971895197036	4.32719140616843	4.00377840981078	3.2727170627888	5.05696491205585	4.28938501296961	4.36099418180577	3.88768123271603	0.958627434441374	0.0840885247334667	0.315348524018915
Merged-chr2-101871368-4	chr2	101871245	101871445	+	882.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	11682.0	NM_001355625	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	4.31088397020729	4.0924510991079	4.65390280117729	4.24255371586995	4.59123157442181	4.30007907187156	4.29212338198302	3.84214264115799	-0.101305970026269	0.8192115651287	0.930746026231085
Merged-chr2-172441384-4	chr2	172441274	172441474	+	893.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025542, intron 1 of 8)	intron (NM_025542, intron 1 of 8)	796.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	5.07852319470503	4.97246743000497	5.10834836990042	4.95825291527952	4.47650536989799	4.36990814914488	4.47357076318079	4.62269235681497	-1.14257050224523	0.000941976238924307	0.0128225141920813
Merged-chr2-59240802-3	chr2	59240712	59240912	+	946.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	79962.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	3.51744153086627	3.56223328800584	4.03701626938429	3.7545786187326	3.69182014515558	3.7586301235508	4.2130380574161	3.85120187713785	0.456257400747305	0.350692422630643	0.658186562602986
Merged-chr1-151620827-4	chr1	151620719	151620919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	49446.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	7.26932213616951	7.28884650479383	7.12776263701273	7.25725292143169	7.08233682767919	7.28109506300673	7.0325984812882	6.85118937128957	-0.23221470960123	0.223823449182008	0.5319908267715
Merged-chr11-114903302-6	chr11	114903225	114903425	+	968.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13284.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	4.27324724293647	4.32094996134915	4.40222281546798	4.59487079305559	4.04255979335402	4.48933422229685	4.06350989600169	4.22553011518023	-0.503494568591529	0.215070653380151	0.521046864244511
Merged-chr3-69044966-5	chr3	69044914	69045114	+	934.8800050000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025863)	promoter-TSS (NM_025863)	-272.0	NM_025863	66949.0	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	5.11051900802865	4.7927752363383	4.95661929704501	4.99312682670101	4.61979858916929	4.75254824566743	4.68013564676826	4.65799988145403	-0.607552984924641	0.0670709987064747	0.276227889656203
Merged-chr11-94129866-4	chr11	94129755	94129955	+	854.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81599.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	4.23647768030656	4.55454203748297	4.04346778893938	4.47663841472198	4.14012995051637	4.31725918825426	4.02707908808944	4.14144448381571	-0.485941065351079	0.239967679634614	0.550420838770049
Merged-chr6-123263382-4	chr6	123263279	123263479	+	748.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163161, intron 1 of 5)	intron (NM_001163161, intron 1 of 5)	1272.0	NM_010819	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	4.08878536475109	4.36399908101211	4.03945442035802	3.80825900945812	4.3341806208955	4.52293072821588	3.91786582319357	4.18125971884658	0.443319567973049	0.314370957996408	0.626354487695056
Merged-chr12-8502616-4	chr12	8502501	8502701	+	924.712524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2592.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	4.06417248478959	4.20201113820523	4.30494344810732	4.2199029281183	4.13445541093049	4.74730325358411	4.09910836451407	4.46633801219828	0.430981819900501	0.300088348667252	0.612248910735458
Merged-chr14-54749512-4	chr14	54749427	54749627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	32359.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	5.47427900830375	5.14076022741394	5.65544004869439	5.89158938460959	5.08279439101006	5.27050799634691	5.55304853313952	5.47138188092408	-0.407170365334422	0.206446150505974	0.510433980032075
Merged-chr13-51323284-4	chr13	51323181	51323381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	-85337.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	6.21931945570481	6.08172187634675	6.59033561234174	6.65065751886651	5.87822130430857	6.11532495371826	6.3860898356364	6.15593230991392	-0.420646054980152	0.107766798174121	0.36207542064603
Merged-chr5-24842088-3	chr5	24842008	24842208	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053075, intron 1 of 7)	CpG	253.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	5.1889161777168	4.86906600577627	5.12309311833591	5.08630975435866	5.46265951188088	5.74517745892572	5.09853503126716	5.66569613208872	0.810134954635283	0.00922526593526294	0.0745002500574178
Merged-chr5-135976056-2	chr5	135975963	135976163	+	724.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1587.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	2.79431199828814	2.57402556971006	2.64100520893412	2.38117665193466	2.98077952915977	3.45211460536705	3.45162258779364	3.11651296218349	3.2006137529285	3.00526308029921e-06	9.45674716147734e-05
Merged-chr3-108797968-4	chr3	108797854	108798054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011504, intron 16 of 18)	intron (NM_011504, intron 16 of 18)	42548.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	6.34312595276762	5.7891484039715	5.894615105482	6.30040618767633	6.32304895189909	5.80388482839892	6.2413671293764	6.46998781290319	0.190132561939448	0.488618385345293	0.761377570765248
Merged-chr4-3981604-4	chr4	3981510	3981710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38053.0	NM_181989	242285.0	Mm.98096	NM_181989	ENSMUSG00000028236	Sdr16c5	Rdhe2|Scdr9	short chain dehydrogenase/reductase family 16C, member 5	protein-coding	6.08921094165732	6.02189074429351	6.40755171215342	6.577826102501	6.08967800378497	5.75704605053626	6.12091004373301	6.38637507365858	-0.30198857732878	0.261318005629214	0.573235771778903
Merged-chr5-103760936-4	chr5	103760845	103761045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	6372.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	7.36381832336713	7.08932375903983	7.46776909419416	6.97655232332175	7.23179076892892	7.10467596465902	7.20630571643502	7.16004314450307	-0.063638937952777	0.752676176794283	0.902626829735826
Merged-chr6-86806579-2	chr6	86806478	86806678	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12994.0	NM_013471	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	3.63448578155606	3.12372882690789	3.17562496943743	3.16097811052266	3.26380166671282	3.28787743549658	3.28003804392048	2.97627702305585	-0.280612157251182	0.628320822240222	0.841485056939805
Merged-chr12-119357479-4	chr12	119357378	119357578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85932.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	5.74717090351198	5.77689795266193	6.26756845397222	6.33874417545608	5.86124599935895	5.92489582227093	5.76911803339763	5.48927943721275	-0.479848147243677	0.0925671822135128	0.332787224122745
Merged-chr17-28180919-4	chr17	28180779	28180979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172617, intron 2 of 14)	intron (NM_172617, intron 2 of 14)	3461.0	NM_172617	224656.0	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding	6.35960440253848	6.44500971085377	6.36072804076409	6.37350988047735	6.42454360083716	6.53694668792657	6.70303109234704	6.35618336408005	0.181583790199148	0.398734207954387	0.696854797387186
Merged-chr3-109027300-3	chr3	109027207	109027407	+	986.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163567, exon 1 of 11)	exon (NM_001163567, exon 1 of 11)	300.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	4.54478025222493	4.27837416863841	4.30916799309932	4.37723854913309	4.36580910117369	4.19638309617393	4.05539212970311	4.16960229100861	-0.41372489705418	0.294960103063974	0.607054074772029
Merged-chr7-126199866-4	chr7	126199781	126199981	+	938.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 1 of 23)	intron (NM_028816, intron 1 of 23)	620.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	4.72961393132458	4.52210895193031	4.80506575937612	4.18282776581446	5.1368256038195	4.65637190035942	4.62934105081248	5.17514363135005	0.765184730670091	0.0480353553318499	0.226131518331068
Merged-chr7-131371165-4	chr7	131371073	131371273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039534)	promoter-TSS (NM_001039534)	27.0	NM_001039534	214580.0	Mm.272948	NM_177609	ENSMUSG00000063179	Pstk	5430423O14Rik|5730458D16Rik|Gm1099|R75284	phosphoseryl-tRNA kinase	protein-coding	6.91633862862234	6.80852123371629	7.06359231642116	7.14532626381085	6.79968418218279	6.57634762458529	6.7610710976233	6.70240886192201	-0.394038490990804	0.05315021796489	0.240444860259687
Merged-chr6-33540221-3	chr6	33540140	33540340	+	882.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	291112.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	3.33229051637391	3.21940589841283	3.54497891768917	3.3234250122087	3.54237706504596	3.32302459680884	3.32038814549031	3.33099278131823	0.117215715821714	0.822509314983397	0.932143478460956
Merged-chr2-46315472-4	chr2	46315390	46315590	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	618885.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	4.23777691779948	3.86047303211164	3.86247030158874	4.16873479785101	4.16235693801772	4.13958349193163	3.99971623650142	3.91372836920259	0.027490786541648	0.949243408785573	0.981767143661794
Merged-chr6-136831880-4	chr6	136831780	136831980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001039558, exon 2 of 2)	5' UTR (NM_001039558, exon 2 of 2)	3037.0	NM_178776	320135.0	Mm.386899	NM_178776	ENSMUSG00000047515	BC049715	-	cDNA sequence BC049715	protein-coding	5.85706333940473	5.87478724400761	5.64035048838324	6.23092564909046	6.3364673162078	6.38139894185932	6.41488311725254	6.18288201575636	0.593314650132648	0.0212955921061877	0.13349176138497
Merged-chr10-14459994-2	chr10	14459893	14460093	+	837.25	f0_balb.idr|f0_c57.idr	intron (NM_001002268, intron 4 of 24)	intron (NM_001002268, intron 4 of 24)	85043.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	3.77184273350522	4.54036689777512	4.05146639042465	4.32573106227594	4.30207541187269	4.22562981435346	3.98390807791464	4.19179666176518	-0.0733399458162185	0.870376280731324	0.951344955435208
Merged-chr7-97123561-4	chr7	97123468	97123668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	41817.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	6.40423025463424	5.63184029967911	5.91105477892551	6.21410420940839	5.92877665396398	5.74593857318542	5.8809017828083	6.28582798192871	-0.156853019937985	0.584250736649374	0.8175571050965
Merged-chr14-30607908-4	chr14	30607805	30608005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 3 of 17)	intron (NM_011103, intron 3 of 17)	2405.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	5.58888207390132	5.52516840873558	5.30705623022232	5.47870408117787	5.64318931519981	5.57326315837392	5.28097893338183	5.30341088133717	-0.0198826435938068	0.943983051740643	0.979871808316036
Merged-chr7-31112228-3	chr7	31112141	31112341	+	923.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110252, intron 2 of 13)	intron (NM_001110252, intron 2 of 13)	-1244.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	3.77683401382997	3.77915875511417	4.07135595022169	3.80544965746253	4.36747566031279	3.7812577805005	3.86691124017275	3.88073992997225	0.414960449314565	0.371980230845499	0.675938343451834
Merged-chr3-115815660-4	chr3	115815573	115815773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72386.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	5.08554707641232	5.12267503196332	5.31238920543854	5.41578699901791	5.43588930637165	5.0763547517437	5.34340590873955	5.42167673134291	0.142811000922436	0.634293616807744	0.845095562869841
Merged-chr12-17679757-4	chr12	17679660	17679860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11049.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	7.46609953720794	7.46697996156157	7.3994197981322	7.65689675062991	7.54088051099547	7.33590513549634	7.55584466262058	7.39430049485823	-0.0616457672102183	0.730234724365642	0.893000516342052
Merged-chr17-62574742-4	chr17	62574619	62574819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	306598.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	7.77000709535021	7.39735381643407	8.02121865786019	8.11676776227052	7.89397937152802	7.72457634981681	7.70161442731087	8.02230169719225	-0.0231993283965496	0.911903832795634	0.967058605013842
Merged-chr19-23057041-4	chr19	23056938	23057138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84188.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	6.21796420746557	5.33459628964574	6.03000614759415	6.28512931373646	5.63317164077004	5.45563211054904	6.20430472583876	5.70190514260953	-0.387529316883302	0.239255457293875	0.549690590836987
Merged-chr2-71044308-3	chr2	71044212	71044412	+	680.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	intron (NM_145524, intron 1 of 9)	11294.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	2.78114491717166	2.63005649554813	2.78151965225762	2.74428542052543	2.49257662184408	2.47219380526978	2.44210600615708	2.94498019245227	-0.655428904085211	0.35662460991187	0.663014760197382
Merged-chr17-29491904-4	chr17	29491785	29491985	+	951.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008842, exon 4 of 6)	exon (NM_008842, exon 4 of 6)	840.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	4.14743975766143	4.40570304249861	4.75677563163509	3.84639092227808	4.50863398219938	4.85776091569756	4.76714645670925	4.82089943056658	0.940914504773492	0.0260139117270411	0.152524235817056
Merged-chr11-83662457-4	chr11	83662383	83662583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013652)	promoter-TSS (NM_013652)	-101.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	7.30747497993769	7.8993840222579	7.34037368737672	7.46973899088357	7.28204474407133	7.64602993833917	7.32442935842441	7.30364345270555	-0.181125732820595	0.392539607117469	0.691992389108016
Merged-chr8-24417404-2	chr8	24417304	24417504	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21542.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	2.7472053450338	2.75984260162761	3.26587692272825	3.55975119461565	3.21693602015916	3.20493183964742	3.08338000147212	3.20944497566678	0.160494764122747	0.821310068793756	0.931619087929607
Merged-chr18-32187428-4	chr18	32187321	32187521	+	788.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011946, intron 1 of 16)	intron (NM_011946, intron 1 of 16)	24332.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	3.97098938641178	3.96161728953942	3.82846120177577	3.81592358833919	3.96937256649335	3.66415009535573	3.59602628102185	3.87569951538533	-0.281484763979123	0.539859516379689	0.792406302070178
Merged-chr8-119824252-4	chr8	119824154	119824354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	16325.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	6.15907892062811	5.54006145375928	5.43529450988485	6.05760007353357	5.50389054770993	5.64504986615859	5.95841786595986	5.76269325654005	-0.198248211482019	0.512984436580725	0.776079955542303
Merged-chr10-86706313-4	chr10	86706165	86706365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011631)	promoter-TSS (NM_011631)	454.0	NM_001003939	103220.0	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	6.43835366348469	6.25066135673048	6.30405717044391	6.27029112443063	6.08962253489776	6.01127419170377	6.01625547969236	6.06449171003831	-0.405345997327693	0.071965776825621	0.288247821094529
Merged-chr9-35114723-4	chr9	35114632	35114832	+	967.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-1996.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	4.67923512632494	4.7431555502025	5.20329060779141	4.61120002396782	4.64188544814105	4.93224716516336	4.84446884909319	4.59342688015006	-0.130504271978848	0.718892191764373	0.887684154524562
Merged-chr11-50827786-4	chr11	50827683	50827883	+	858.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013922)	promoter-TSS (NM_013922)	-52.0	NM_013922	30944.0	Mm.103674	NM_013922	ENSMUSG00000044807	Zfp354c	5330421P20Rik|AJ18|AW743325|Kid3|Tcf17l2|Znf354c|mKIAA4218	zinc finger protein 354C	protein-coding	4.66788525240542	4.27957075913033	4.66865765351526	4.78524526239084	4.22449889575868	4.24798894644348	5.07880776945702	4.46417585983752	-0.143408125207751	0.737631874339794	0.896392006995728
Merged-chr3-90220374-3	chr3	90220250	90220450	+	681.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026677)	promoter-TSS (NM_026677)	-434.0	NM_026677	68328.0	Mm.29355	NM_026677	ENSMUSG00000027935	Rab13	0610007N03Rik|B230212B15Rik	RAB13, member RAS oncogene family	protein-coding	3.33484972584387	3.36460131294437	3.07848117061566	3.15065427312234	3.54751381168378	3.56278900252845	3.48488378737363	3.44515621180556	0.978382631508765	0.056789124387873	0.249647239733234
Merged-chr11-98863579-4	chr11	98863489	98863689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197940)	promoter-TSS (NM_197940)	-9.0	NM_197940	68524.0	Mm.28661	NM_197940	ENSMUSG00000038013	Wipf2	1110014J05Rik|5730509C05Rik|AA407487|Gm1176|Wich|Wire	WAS/WASL interacting protein family, member 2	protein-coding	6.13845820194109	6.69634012722951	6.2441462606166	6.12905291954214	6.46969078745186	6.68992541086963	6.60382543508643	6.55737616477373	0.380871366465147	0.111314475678136	0.368681299510704
Merged-chr3-105710207-3	chr3	105710087	105710287	+	860.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163356, intron 1 of 1)	intron (NM_001163356, intron 1 of 1)	4729.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	4.32087151814698	4.30900413112735	4.23681875206807	4.61678120372514	3.72136795901692	4.00994930693079	3.871931132563	4.27716259416429	-1.06810340181257	0.0154282345342101	0.106969282265842
Merged-chr2-155385295-4	chr2	155385234	155385434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178111, exon 2 of 4)	5' UTR (NM_178111, exon 2 of 4)	3478.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	5.46806721658852	5.9674719359018	5.4386059325	5.61699655644326	5.86005435421733	5.86378301463912	5.52826666347445	5.78240142103116	0.203856077734275	0.464439955867781	0.745452017408793
Merged-chr6-50294332-4	chr6	50294218	50294418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347213, exon 24 of 24)	3' UTR (NM_001347213, exon 24 of 24)	-32549.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	5.50767685366746	5.82540441933573	5.62322568456092	5.64968034709434	6.12438580518319	5.95269116520626	5.9486318272344	5.64636347182683	0.453192226703329	0.0838223296195785	0.314832441559389
Merged-chr7-4087720-4	chr7	4087623	4087823	+	926.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033568, intron 6 of 8)	intron (NR_033568, intron 6 of 8)	-24519.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	4.35888406154387	4.13992253172729	4.05761724268587	4.62233848606674	4.56847496285851	4.4425580691601	4.58250961145881	4.77406650234668	0.59004438813602	0.146212748590523	0.426248248358651
Merged-chr9-86631317-4	chr9	86631208	86631408	+	935.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008615, intron 6 of 13)	intron (NM_008615, intron 6 of 13)	55969.0	NM_001198933	17436.0	Mm.148155	NM_008615	ENSMUSG00000032418	Me1	D9Ertd267e|Mdh-1|Mod-1|Mod1	malic enzyme 1, NADP(+)-dependent, cytosolic	protein-coding	4.37296072796672	4.38976904240023	4.46216724441107	4.66552355352445	4.69054547594969	4.35489714990035	4.7751840062538	4.62037479257145	0.291254049330615	0.432365335542487	0.722408561383088
Merged-chr14-31401542-4	chr14	31401453	31401653	+	848.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	16124.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	4.11492709139611	4.02648369710433	3.92014673263549	4.40467730206554	3.81502581022408	3.67830903653256	4.0517430628659	4.39539654939906	-0.335203132038292	0.481330792376221	0.756510503784291
Merged-chr13-47215592-4	chr13	47215499	47215699	+	867.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	21596.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	4.55743963452417	4.3576563940367	4.27792879563659	4.51398221469106	4.27047658900787	4.04193768008849	4.21400617302845	4.2297466430106	-0.582208967950131	0.136808243106765	0.411349382676314
Merged-chr12-79172686-4	chr12	79172594	79172794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016800)	promoter-TSS (NM_016800)	-236.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	8.07426262335784	8.12752049043644	8.06928185680825	7.97752178864911	7.79689821588138	7.61958407122367	7.91857898033575	7.8354869873167	-0.338198180616537	0.0384916735128824	0.196830388408558
Merged-chr6-90737608-4	chr6	90737508	90737708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	-21079.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	6.2521635266105	6.25832381705852	5.85566747334834	6.05837508390119	6.49596222934233	6.42879106156253	6.14344642668176	6.45771318375833	0.419836865748156	0.07568438062711	0.297169313398658
Merged-chr5-20256241-2	chr5	20256106	20256306	+	655.75	f0_c57.idr|f1_balb.idr	intron (NM_001170746, intron 6 of 22)	intron (NM_001170746, intron 6 of 22)	348688.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	3.29082362066071	3.18407417961896	3.78805928298223	3.5373282844987	3.45572268747493	3.13310649467463	3.39410955044129	3.34884110956261	-0.444446506647559	0.428964365158422	0.719920177016205
Merged-chr17-67345979-3	chr17	67345879	67346079	+	876.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	B4|SINE|B4	8480.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	3.91383163301579	4.13286329934329	3.9144087741193	3.55399370323038	4.09176638679808	3.82135434970555	3.6293562023683	4.05119550124402	0.0860070606548983	0.858416246514389	0.946576014812915
Merged-chr15-99474275-2	chr15	99474174	99474374	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029236, intron 1 of 1)	intron (NM_029236, intron 1 of 1)	456.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	3.44389971337952	3.60635439543431	3.44438349880494	3.12693882459472	3.29163918555416	3.32282120089499	3.26123984576638	3.44242691824749	-0.275442684255559	0.61144233954918	0.832299036485985
Merged-chr11-115690554-4	chr11	115690452	115690652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	8982.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	5.1760020053005	5.39372522367822	5.00975846924942	4.62806244205641	5.45465145817517	5.1856036011939	5.02048308747806	5.10913181966099	0.267362724761696	0.444034284625233	0.730462472425057
Merged-chr2-129129707-4	chr2	129129635	129129835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025395)	promoter-TSS (NM_025395)	35.0	NM_025395	66170.0	Mm.40621	NM_025395	ENSMUSG00000037938	Chchd5	1110027L01Rik|AW045710	coiled-coil-helix-coiled-coil-helix domain containing 5	protein-coding	7.49354301025463	7.60790064007025	7.39943228581325	7.46942177479585	7.45515308449412	7.26364388730086	7.51157048935632	7.3124217748766	-0.135305727122033	0.443627594392057	0.730108641783081
Merged-chr9-70740185-4	chr9	70740075	70740275	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007399, exon 5 of 16)	exon (NM_007399, exon 5 of 16)	61193.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	5.16094720072074	5.06319826345592	4.84486799531588	5.26249535405654	5.05819399568449	4.89932609980743	5.0400759838498	5.41113011004666	0.0214652645334461	0.947247385455191	0.98111407772351
Merged-chr2-91984738-4	chr2	91984682	91984882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011957, intron 10 of 11)	C-rich|Low_complexity|Low_complexity	-21219.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	6.86457607452017	6.74328662999967	7.08547066072816	7.14996266054099	6.42860732343446	6.82492350749273	6.59791029194143	6.74939808613322	-0.465739164194677	0.0329911504852676	0.178263759061306
Merged-chr12-84190307-3	chr12	84190230	84190430	+	895.1333619999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	3685.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	3.60461149769221	3.5105311295933	3.25137214146934	3.18818023134401	3.64616977603941	3.55643767695362	3.4836467821129	3.87979604659621	0.853956396198261	0.097332583825749	0.341855126030444
Merged-chr2-73462928-4	chr2	73462856	73463056	+	928.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-9067.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	4.40675651395113	4.09827154557141	4.36292096403026	4.74388587454833	4.39063541298477	4.18589114771154	4.34340685360917	5.06841650350023	0.244421895796196	0.585194095475119	0.818019059737303
Merged-chr11-74724234-7	chr11	74724173	74724373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037610)	promoter-TSS (NR_037610)	111.0	NM_013625	18472.0	Mm.397111	NM_013625	ENSMUSG00000020745	Pafah1b1	LIS-1|Lis1|MMS10-U|Mdsh|Ms10u|Pafaha	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	protein-coding	6.60706725236759	7.2185329840918	7.28006526820389	6.72240710434336	7.07607284723248	7.20251905212426	6.90189818907836	6.9961971847333	0.0890642565200413	0.701751006515006	0.87986497961479
Merged-chr6-120898313-4	chr6	120898223	120898423	+	819.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007544, intron 3 of 5)	intron (NM_007544, intron 3 of 5)	18501.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	3.76243124551538	3.92855561117068	3.76294216056346	3.59034314738142	4.00863314927484	3.99117133195982	3.90260676252292	4.22066819611476	0.785626887963341	0.0740381443677905	0.293182813794435
Merged-chr4-133157392-4	chr4	133157288	133157488	+	939.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	26755.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	4.56238484505224	4.5715201669328	4.82057701824056	4.30709477096843	4.88692070879146	4.07902322101389	4.50093355454642	4.85005040742879	0.127510310245943	0.758837687255146	0.905352124390447
Merged-chr2-5966185-3	chr2	5966079	5966279	+	946.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081132, intron 3 of 21)	intron (NM_001081132, intron 3 of 21)	14710.0	NM_001081132	326622.0	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	4.42732183076074	4.29800456210608	3.752320127279	4.07003441671849	3.8690064928126	4.1079981879271	4.11535733821121	4.56650491021933	0.0712513840306884	0.878272321521514	0.95446425902835
Merged-chr14-101503753-3	chr14	101503667	101503867	+	928.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 3 of 18)	intron (NM_001081278, intron 3 of 18)	105424.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	4.27879832724597	3.98364925220005	4.19792205898724	4.27553927096198	4.09678475238759	4.03791834124833	3.67439600101291	3.8044423729024	-0.721242363304951	0.105043077319019	0.356438778300563
Merged-chr17-27910359-4	chr17	27910247	27910447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	1041.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	6.74041115618983	7.01250725163995	7.07293198010125	6.84340906678706	6.78354373893441	6.44899262601125	6.63244867398383	6.58179833737993	-0.417160257760736	0.0474829750092039	0.224540969849862
Merged-chr6-34620429-4	chr6	34620309	34620509	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 1 of 13)	MLTR14|LTR|ERV1	21905.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	6.62901410203807	7.25823911398947	6.95536871253657	6.90062158655234	6.01095055873978	5.52436274077153	5.8269341686787	6.1861078183916	-1.5417983310774	4.55624522997755e-09	2.58207786006825e-07
Merged-chr10-128526744-4	chr10	128526630	128526830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011843)	promoter-TSS (NM_011843)	-871.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	4.87294153151889	5.19949803378278	4.56912046226003	5.32790054844232	5.09710604495245	5.35507084408116	5.21656131941995	4.94592852861457	0.213821729965511	0.546370177188482	0.796350145922542
Merged-chr10-86772545-4	chr10	86772457	86772657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003910, intron 14 of 15)	intron (NM_001003910, intron 14 of 15)	-6448.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	7.40044509962071	7.31998754976677	7.31978691726795	7.68229920217859	7.57260248884053	7.538616866956	7.55694642051905	7.19261247708926	0.0341951169584185	0.862064091478149	0.947936227886533
Merged-chr4-140971811-4	chr4	140971703	140971903	+	829.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355515, intron 3 of 7)	intron (NM_001355515, intron 3 of 7)	10532.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	3.86353269000476	3.7544226803268	3.5896933800803	3.35711318014003	4.18611610330406	3.76913891981475	3.98637628936231	4.00209560628209	1.04561479113555	0.0274086961792904	0.157816177426445
Merged-chr1-191397655-3	chr1	191397562	191397762	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144880)	promoter-TSS (NM_144880)	-621.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	7.78550459724124	7.8220034555243	7.61219768136626	7.59299102071157	7.89285169706824	7.70689301174625	8.12672396896527	7.84209599585014	0.259893349503494	0.143657597516741	0.422065835669136
Merged-chr17-64600111-4	chr17	64600009	64600209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-1540.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	5.12217841532981	4.18532124379244	5.30396515678546	4.97004601852862	5.01757266348223	5.35997567392839	5.24888046761551	5.40768995135549	0.579420513589233	0.139541840675318	0.41537262738555
Merged-chr2-121474037-4	chr2	121473949	121474149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081975)	promoter-TSS (NM_001081975)	-26.0	NM_001081975	100034361.0	Mm.270393	NM_001081975	ENSMUSG00000048222	Mfap1b	-	microfibrillar-associated protein 1B	protein-coding	6.12381043596181	6.10436238704211	5.61702163014846	5.87137598655847	6.26006973419098	6.21786268711868	6.1703693067985	6.05930589062289	0.373049712451002	0.130720270253639	0.402410609652443
Merged-chr8-37010222-4	chr8	37010138	37010338	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126063, intron 2 of 2)	intron (NR_126063, intron 2 of 2)	14000.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	4.83965125594243	5.049323643993	4.71728312432088	4.70917128008196	5.32049598852936	4.81030866566409	5.58061986136541	5.05296784508383	0.763544111969612	0.0262306704582717	0.153443186701827
Merged-chr7-63917315-2	chr7	63917215	63917415	+	875.9833369999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256311, intron 1 of 2)	ORR1C1|LTR|ERVL-MaLR	458.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	2.35274106533942	2.3710164339936	2.41298219941726	2.33951179486603	2.06356283783377	2.0172801057004	2.14839111426981	2.08004241066057	-2.14808805145258	0.0136971176455925	0.0984894572073569
Merged-chr13-85289366-6	chr13	85289295	85289495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145452)	promoter-TSS (NM_145452)	91.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	8.71243749938256	8.67777949937545	8.99937162316216	8.58076327285563	9.09774668487449	9.18460345191442	9.17947990556886	8.92922373818743	0.440505709411458	0.0064012062007996	0.0569325823024759
Merged-chr7-143008194-4	chr7	143008098	143008298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020286, intron 2 of 7)	intron (NM_020286, intron 2 of 7)	2539.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	5.23552706832688	5.14144185839342	5.23641300165609	5.42791487375371	5.70606947770487	5.37966499959315	5.3338934121246	5.57332749133866	0.420552336549912	0.148294377377552	0.430071295027352
Merged-chr2-181410869-4	chr2	181410764	181410964	+	882.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028125, exon 3 of 3)	3' UTR (NM_028125, exon 3 of 3)	13524.0	NM_027656	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	4.83196923731695	4.92633616087496	5.27548711307737	4.86730829701361	4.9300902911685	4.62141190335358	4.77184529572823	5.13111633140381	-0.19493518966695	0.570434079190017	0.810065784623151
Merged-chr7-16252159-2	chr7	16252059	16252259	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	B1_Mur4|SINE|Alu	7179.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	3.68993721593005	3.33504245648126	3.60950843056623	2.9980706905878	3.28534366912645	2.96551796930965	3.06355354288146	3.19791912345867	-1.121847507002	0.075144804908352	0.295846479340791
Merged-chr1-13295712-3	chr1	13295624	13295824	+	995.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	Tigger5|DNA|TcMar-Tigger	76705.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	4.16908812385638	3.79500857466277	4.22368905831573	4.57917642261747	5.08842113709967	4.64295132828758	4.97444069908097	4.93703174184392	1.46763209492176	0.000771520254665249	0.0109285652152871
Merged-chr10-40257644-4	chr10	40257538	40257738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026113)	promoter-TSS (NM_026113)	74.0	NM_001359491	67371.0	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	6.28383759121717	6.44628119682922	6.55588531510088	6.52072436872759	6.39045416104998	6.01646052616398	6.1346242016124	6.31767481110333	-0.339178980784706	0.138501932775734	0.414010963927598
Merged-chr6-92942153-1	chr6	92942053	92942253	+	853.0	f0_balb.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	1571.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	3.04095473296353	2.71441429317141	3.19076354820414	3.19899486956349	2.3320972884272	2.55678389605389	2.44541268868769	2.67624653889984	-3.36231776936572	0.000215575488947972	0.00386997420626172
Merged-chr10-24165836-4	chr10	24165714	24165914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	16497.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	5.69562626791561	5.54542998689619	5.99308997070829	5.87819002236846	5.79399333340342	5.6198246645857	5.78946765415797	5.83801202810867	-0.0450484549606896	0.863278768983905	0.948573763987243
Merged-chr12-112668158-4	chr12	112668105	112668305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331107, intron 2 of 13)	intron (NM_001331107, intron 2 of 13)	6071.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	6.81206101740895	6.27564167277175	6.64838456267492	6.94085142975976	6.34269838331772	6.06644700476195	6.4252898833138	6.2702076982643	-0.608899751313022	0.0133736871600255	0.0969561516354041
Merged-chr7-27481753-4	chr7	27481660	27481860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5193.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	6.49656456375189	6.37603626999398	6.41399235641926	6.67955848006367	6.17495082561316	6.21140432628809	6.3103046826857	6.47677816995379	-0.319147437720231	0.157489331911296	0.444059226672193
Merged-chr6-32249267-3	chr6	32249156	32249356	+	904.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 5 of 31)	intron (NM_175750, intron 5 of 31)	198968.0	NM_029587	76382.0	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	3.3071479686526	3.38161952419621	3.5686499909614	3.43122376450563	3.13532915792149	3.36032478492483	3.23685406564885	3.24670061368439	-0.674274187025562	0.205140868209747	0.508754053818447
Merged-chr9-45937096-2	chr9	45936996	45937196	+	828.599976	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172257)	TTS (NM_172257)	-1038.0	NM_011526	21345.0	Mm.283283	NM_011526	ENSMUSG00000032085	Tagln	Sm22|Sm22a|Ws310	transgelin	protein-coding	3.52127328525301	3.19108111914388	3.2364886844239	3.35063349626212	3.46298384017917	3.63808536289546	3.40177555485675	3.41321360823193	0.514452783458439	0.317018530284636	0.628905690750891
Merged-chr17-34647100-4	chr17	34647004	34647204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017406)	promoter-TSS (NM_017406)	-42.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	8.06191048980169	8.29472534904978	7.45081432890272	7.98354351896141	8.27612701870283	8.35951122720519	8.2938167441894	8.05786521041297	0.339905351635163	0.100397441158431	0.347845742631733
Merged-chr18-12218688-1	chr18	12218588	12218788	+	642.0	f0_balb.idr	intron (NM_008720, intron 4 of 24)	B3|SINE|B2	17698.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	2.7575316898131	2.60881164107081	2.86922793237606	2.95962920550909	2.51377245583276	2.36945237922678	2.49436427618215	2.50012513987192	-1.87085568217884	0.0125170689443088	0.0925184268314598
Merged-chr16-26582345-6	chr16	26582258	26582458	+	894.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152416, intron 1 of 12)	intron (NR_152416, intron 1 of 12)	653.0	NM_008364	16180.0	Mm.253424	NM_008364	ENSMUSG00000022514	Il1rap	6430709H04Rik|AI255955|AV239853|IL-1RAcP	interleukin 1 receptor accessory protein	protein-coding	3.86729484524519	4.06330513414796	4.2012597416212	3.97717740046296	4.05396598077078	4.04218359080586	3.95559472112089	4.23950934939689	0.126615840943652	0.762287671666048	0.906868917141911
Merged-chr17-27591947-3	chr17	27591772	27591972	+	890.361084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291046, intron 2 of 4)	intron (NM_001291046, intron 2 of 4)	-26145.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	2.82337118582582	2.52621966773753	2.58475142067989	2.22944923382469	3.50267081860141	3.32820616630998	3.34824349427307	3.36258731426974	5.14702563490117	6.33085806458906e-09	3.50407578677593e-07
Merged-chr1-152798310-4	chr1	152798200	152798400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1853.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	7.95749513929857	8.11579626657265	7.81223440459074	7.90474007040902	7.83620774447398	7.93393592748938	7.97463768097428	7.95347671796913	-0.0380527857370648	0.816391987113192	0.929343098303639
Merged-chr1-52501512-3	chr1	52501420	52501620	+	866.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1072.0	NM_008667	17936.0	Mm.25903	NM_008667	ENSMUSG00000002881	Nab1	-	Ngfi-A binding protein 1	protein-coding	2.98303841015498	3.0343437568478	3.09834839627418	3.14368488800898	2.99137790492591	2.82112150539766	2.91229294704942	2.92046801511819	-0.662660720266602	0.265372339791812	0.577001515467012
Merged-chr17-80048411-3	chr17	80048334	80048534	+	557.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152119, intron 6 of 13)	intron (NR_152119, intron 6 of 13)	13834.0	NR_152119	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	2.73041577068449	2.73202813153079	3.06400517021824	2.99412108028004	3.04257760996624	3.11402824330406	3.10919601403862	3.32697398999305	1.04259820518376	0.0888455746163701	0.325255318398324
Merged-chr5-121197572-4	chr5	121197489	121197689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6192.0	NM_011202	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	5.04103888574163	4.99419757818755	5.04187952231801	5.07834482695168	5.08422052607457	5.24958957398854	5.29320592197088	5.13796722270748	0.276209407385591	0.352646170851238	0.659679630621423
Merged-chr1-186749880-2	chr1	186749780	186749980	+	577.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026041)	promoter-TSS (NM_026041)	-522.0	NM_026041	67223.0	Mm.289841	NM_026041	ENSMUSG00000001305	Rrp15	2810430M08Rik|5430437H21Rik	ribosomal RNA processing 15 homolog (S. cerevisiae)	protein-coding	2.94873950081322	2.60976009525602	3.06529566177476	2.57239237243051	2.63686215134152	2.93293110793363	2.93753545159715	3.21981331504507	0.58743603633759	0.385919586804588	0.687298864016961
Merged-chr9-119328755-2	chr9	119328655	119328855	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6328.0	NM_133985	108737.0	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	3.04103922712062	2.89139778838843	3.10404468307685	3.11241957731935	3.13576572083052	3.27547932864028	3.26227606731122	3.32616962068958	0.787364763306264	0.156752806133735	0.442881276060537
Merged-chr3-37802886-4	chr3	37802794	37802994	+	838.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78534.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	3.96477227927873	3.76536925240093	4.3207926312337	4.48970835491943	3.71304420091875	3.5973605893488	4.09212471543416	4.39291051048393	-0.481397881907155	0.355010070386574	0.661620239312071
Merged-chr9-89257208-4	chr9	89257098	89257298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45814.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	7.03214407555009	7.26455184065396	7.90469063006145	7.32136936880891	6.53618714376747	6.64156020961868	6.71453432755421	6.10953867145071	-1.25194549837314	1.41308980486652e-06	4.78507703237841e-05
Merged-chr3-83055414-4	chr3	83055318	83055518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016784)	promoter-TSS (NM_016784)	-120.0	NM_016784	53317.0	Mm.286349	NM_016784	ENSMUSG00000027998	Plrg1	AA958940|C80566|Tango4	pleiotropic regulator 1	protein-coding	9.14106523186465	9.10204478418112	8.99851787211293	9.19894105081825	8.91476576261292	8.83072392327584	9.27578770043395	8.72044713612066	-0.198711979122506	0.241521018978102	0.552043827273772
Merged-chr1-159225651-4	chr1	159225546	159225746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6554.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	5.75598973602124	5.61868563736439	5.73202405322766	6.13572072419178	5.58557641423845	6.07102451914329	5.79941865095798	5.65002697057016	-0.102993756212998	0.71659972162218	0.886643922704511
Merged-chr12-70974632-4	chr12	70974642	70974842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310595, exon 1 of 11)	5' UTR (NM_001310595, exon 1 of 11)	119.0	NM_011184	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	7.57653473444859	8.13097738106591	7.80290642957373	7.16760098926933	7.83234330653553	7.88539264786034	7.87421901050713	7.87880197980118	0.20429840979027	0.367833044380096	0.672367443911938
Merged-chr10-91123452-4	chr10	91123314	91123514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133668, intron 2 of 7)	intron (NM_133668, intron 2 of 7)	549.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	5.66820239230945	5.92910533705273	6.40913310071352	5.69663221117676	5.84141362302624	5.92805094113776	6.00047269419763	6.27388652375375	0.106362908210556	0.710585670906537	0.884197177759025
Merged-chr12-111668688-4	chr12	111668620	111668820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021273)	TTS (NM_021273)	3618.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	6.30565984608315	6.24699742654482	6.27135725821692	5.59649458745569	5.84720925164075	6.18936609811831	5.89127802391625	6.37016293470003	-0.0528898797604404	0.855491170725853	0.9456610454885
Merged-chr9-88719418-5	chr9	88719414	88719614	+	891.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359992)	promoter-TSS (NM_001359992)	73.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	3.92180912442112	4.11624109419221	4.25696765901069	4.02648960718556	4.27961070364077	4.04461690971983	4.31815158139287	4.12156108379885	0.30462972315007	0.454624602726145	0.73842541206324
Merged-chr12-102579271-3	chr12	102579172	102579372	+	786.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 7 of 9)	intron (NM_172584, intron 7 of 9)	24331.0	NM_007693	12652.0	Mm.4137	NM_007693	ENSMUSG00000021194	Chga	ChrA|cgA	chromogranin A	protein-coding	3.11995817855528	2.95807828389093	3.12038374815551	2.98841133123794	3.04227269800431	2.91352718585936	2.7995943111645	3.17298525444312	-0.219967073408547	0.711536118316044	0.884452951567639
Merged-chr7-67462095-4	chr7	67462033	67462233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89275.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	7.98530429167394	7.9792071085616	8.41866848346005	8.41157345830527	8.11077583970948	7.91003918718356	8.05502379755374	8.0622769252111	-0.234644753925496	0.202383514117392	0.504816938301159
Merged-chr11-77622160-4	chr11	77622073	77622273	+	924.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14358.0	NM_144825	216965.0	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	3.78640578095508	4.23435362986981	4.23602557189052	4.14165029011274	4.28061437788863	4.1791571433532	3.77303883552968	4.19056131150117	0.0266363312874247	0.95188172529203	0.982868085362717
Merged-chr5-113956690-4	chr5	113956581	113956781	+	731.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198109, intron 9 of 14)	B3|SINE|B2	37076.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	4.50942511141787	4.01109961706394	3.66964418165821	4.35387815333825	4.44915342495994	4.56555848166357	4.01366834746152	4.22347796091555	0.364551559083203	0.441239480285856	0.728396857622944
Merged-chr7-46847021-4	chr7	46846942	46847142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136069)	promoter-TSS (NM_001136069)	-40.0	NM_001136069	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	5.54553382437897	5.80557849825401	5.75701474061507	5.89402191765501	5.82430093024967	5.40463965739113	5.84279254793764	5.80046603943146	-0.0514500177207489	0.848157094551771	0.942625689889496
Merged-chr8-108574333-4	chr8	108574264	108574464	+	844.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_077224, intron 1 of 1)	intron (NR_077224, intron 1 of 1)	10313.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	3.73477018850834	3.63813403459998	3.51564605486726	3.91036083205509	3.7650326303982	3.50409575872237	3.61614625009439	3.92013984286216	-0.0199696126440744	0.967497777313416	0.988536511573071
Merged-chr19-4148578-4	chr19	4148471	4148671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011778)	promoter-TSS (NM_011778)	-92.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	7.06829656202591	7.05643330693276	6.99474402866225	6.81725974863661	7.1752810435179	7.3167277495711	7.15994083457145	7.29576726347172	0.355009761778986	0.058740219976124	0.255129980331982
Merged-chr4-142095757-4	chr4	142095648	142095848	+	948.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11444.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	5.14478304162981	5.01728484915683	5.44526398655831	5.58702215954751	4.69743401195472	4.4456249325982	4.73022438644346	4.9063099921579	-1.22767509028519	0.00046152473009792	0.00723268797085862
Merged-chr2-151974306-4	chr2	151974203	151974403	+	954.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289151)	promoter-TSS (NM_001289151)	-322.0	NM_028666	73847.0	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	5.17756502102735	5.19531050047355	4.90468327265445	4.42369386784143	5.26681996790998	5.54842717779908	5.15256866894204	4.82293878939087	0.519235681484022	0.164818395920135	0.455072150356386
Merged-chr11-80523065-4	chr11	80522991	80523191	+	878.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177390, intron 21 of 21)	intron (NM_177390, intron 21 of 21)	-13985.0	NR_126552	77417.0	Mm.437510	NR_126552	ENSMUSG00000085078	C030013C21Rik	-	RIKEN cDNA C030013C21 gene	ncRNA	4.1915592788746	4.13148598556261	3.7881384591641	4.34375850186825	4.15327385394263	4.02276763409246	4.08476581156978	4.09994900340899	-0.130990838284142	0.760765014549782	0.906360247228035
Merged-chr11-94329679-4	chr11	94329566	94329766	+	707.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027799, intron 1 of 4)	intron (NM_027799, intron 1 of 4)	1665.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	4.33688932405038	4.07415075305911	3.86989416544114	3.7220189789744	3.6600607674959	3.88429557152193	3.57170668659563	4.05810688750352	-0.589599534329598	0.228483019986358	0.53733507352997
Merged-chr19-42045438-4	chr19	42045326	42045526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026152)	promoter-TSS (NM_026152)	-425.0	NM_026152	67432.0	Mm.24196	NM_026152	ENSMUSG00000025176	Hoga1	0610010D20Rik|Dhdpsl|Npl2	4-hydroxy-2-oxoglutarate aldolase 1	protein-coding	7.11415021817416	7.05742541431629	6.76350757509196	7.06543201539549	7.14255935151604	7.16030887348774	7.05673372255049	6.51044339564995	-0.0189163947295656	0.932726316375472	0.975757296785564
Merged-chr4-43044057-4	chr4	43043949	43044149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	2171.0	NR_045567	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	6.56074482553437	6.78704526726726	6.42395748853407	6.99718898256283	6.72805676621585	6.46785859572796	6.59179538548822	6.52414530311186	-0.203756027250941	0.378228668119963	0.6808269066108
Merged-chr6-65589024-3	chr6	65588906	65589106	+	725.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1392.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	3.08513197389605	3.57896234006837	3.34247320422973	3.32534249310249	3.20053670694894	3.62356188510138	3.38634164561773	3.50487044867988	0.298858176448238	0.584188859300957	0.817552638829506
Merged-chr1-84838289-1	chr1	84838189	84838389	+	819.666687	f0_balb.idr	intron (NM_133975, intron 1 of 40)	intron (NM_133975, intron 1 of 40)	1015.0	NM_133975	14897.0	Mm.209265	NM_133975	ENSMUSG00000026219	Trip12	1110036I07Rik|6720416K24Rik|AA410158|Gtl6|TRIP-12	thyroid hormone receptor interactor 12	protein-coding	4.05160983860312	3.57165842876806	4.25441544240134	3.89693934797039	3.97964011931727	3.63319845465242	3.79582357040002	3.91080210158176	-0.332939094737441	0.489660471234225	0.761934122721916
Merged-chr17-53569909-4	chr17	53569799	53569999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151733, intron 1 of 16)	intron (NR_151733, intron 1 of 16)	2928.0	NR_151733	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	5.7660223073393	5.84981448773739	5.46702992713759	5.69613967754966	5.79012250145375	5.449923314512	5.87476749768775	6.17313051516595	0.236065121766908	0.400054869787433	0.698016583884129
Merged-chr2-146010937-4	chr2	146010850	146011050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76166.0	NM_175280	78774.0	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding	6.58309215291233	6.25733075846498	6.82689931680822	6.65676846873741	6.45720457583516	6.4000717426459	6.76609024284204	6.49826555827491	-0.0867924133562005	0.707831619924397	0.882638079860528
Merged-chr11-72961904-3	chr11	72961818	72962018	+	828.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016745, intron 1 of 21)	intron (NM_016745, intron 1 of 21)	749.0	NM_001163337	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	3.24427271645034	3.07820089968039	3.00003950521906	3.22116846119298	3.02436415337176	3.35723211272051	3.17579090798473	3.29739686412232	0.266137201705571	0.635168688757786	0.845633612363053
Merged-chr2-51089067-4	chr2	51088974	51089174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60037.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	5.8549983246835	5.84091006248085	5.83209539230457	6.02325414490377	5.98243513456013	5.77212882282182	6.24305855902538	5.80359052469165	0.106543857363863	0.676172006500681	0.867068661286877
Merged-chr10-54122018-4	chr10	54121912	54122112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	46090.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	6.12607583977256	5.44971333155578	6.38700536400587	6.07574545175738	6.3229925382129	5.95316755963102	6.434863846196	6.59729232663909	0.456085989985852	0.117077029886927	0.378533169658281
Merged-chr5-139398005-4	chr5	139397916	139398116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	8112.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	7.06834041983766	6.70348910506499	7.53524279241729	7.20615005190142	6.81243286506838	7.13380245585713	6.85412537665998	7.23279674877523	-0.199617196697677	0.403689742238008	0.700922982752502
Merged-chr2-128065752-4	chr2	128065651	128065851	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028765, intron 14 of 17)	RLTR16|LTR|ERVK	-60287.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	4.94771487291362	5.12766374853713	4.83392476814207	5.02924813798535	5.4293416336386	5.12350234748123	5.0942795759999	4.98123433660086	0.353308547823651	0.264823539065942	0.576642744873648
Merged-chr16-36930992-4	chr16	36930906	36931106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030035, intron 20 of 21)	intron (NM_030035, intron 20 of 21)	-3977.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	6.95534872463924	7.12882498248998	6.76758874888815	6.5502258955623	6.96603351133701	6.97306074187097	6.89613808994033	6.55768893215065	0.00367213087833025	0.987233426600414	0.995258250959001
Merged-chr2-27691187-7	chr2	27691045	27691245	+	949.9904789999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	13944.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	4.67258851950554	4.28944863028615	4.51996057190647	4.30622057030421	4.55974312938264	4.80694781161132	4.23089220819909	4.59594730844747	0.264285882053063	0.492035483509542	0.763302174677456
Merged-chr3-55978535-4	chr3	55978437	55978637	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 30 of 57)	L2|LINE|L2	131432.0	NR_033592	71182.0	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo	4.9792443123846	5.28673257546591	5.44838040454739	5.44932614753927	4.62976462239852	5.36300483507645	5.19427874165628	5.33567665064965	-0.296049287470118	0.390560869823095	0.69058015678842
Merged-chr10-128803821-4	chr10	128803811	128804011	+	917.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358267)	promoter-TSS (NM_001358267)	56.0	NM_001358267	73827.0	Mm.24630	NM_178066	ENSMUSG00000047090	Tmem198b	1110012D08Rik	transmembrane protein 198b	protein-coding	3.80343121711337	3.69714113633968	3.94400382238445	3.47864174934736	3.75684162072112	3.97403276465644	3.45633224983543	3.6992298592393	0.00992956613048653	0.9839496883652	0.994216042078056
Merged-chr9-37230072-4	chr9	37229942	37230142	+	908.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_020258, exon 18 of 18)	3' UTR (NM_020258, exon 18 of 18)	21726.0	NM_001310096	66279.0	Mm.41451	NM_025464	ENSMUSG00000032121	Tmem218	1810021J13Rik|AV004931	transmembrane protein 218	protein-coding	4.40434865399877	4.478746683266	4.6849042133101	4.92813163121871	4.60837942390521	4.28695319429463	4.19546538599636	4.5694491704873	-0.493787342058001	0.214826631979348	0.520815559865735
Merged-chr7-79743115-4	chr7	79743030	79743230	+	992.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037927)	promoter-TSS (NM_001037927)	1.0	NR_153403	18631.0	Mm.20615	NM_011068	ENSMUSG00000030545	Pex11a	PEX11alpha	peroxisomal biogenesis factor 11 alpha	protein-coding	5.71069016881484	5.53494821171911	5.14985320078481	5.90827504519823	5.98695842384198	5.75530940630372	5.99275037133796	5.91671976310296	0.476611648494432	0.101359508924759	0.349327869353383
Merged-chr19-21818266-4	chr19	21818162	21818362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033759, intron 12 of 23)	intron (NM_001033759, intron 12 of 23)	39922.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	5.7605846395554	5.46776777952227	6.0038134404946	5.89466942423545	5.97763213454479	5.29597145056319	5.75622568237564	5.80512589656232	-0.0898183277098167	0.758369142577943	0.905111708773712
Merged-chr8-84982290-4	chr8	84982201	84982401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3553.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	6.98752837837743	6.7507096192459	6.793562352962	6.9973320761647	6.87080003342506	6.47947402833	6.81390818300041	6.65520950606259	-0.23972814642735	0.253758283708954	0.565032649092237
Merged-chr18-52768495-6	chr18	52768437	52768637	+	860.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199154, intron 1 of 10)	CpG	393.0	NM_001199154	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	3.3005742701579	3.3881304185658	3.62011684245628	3.43501868172912	3.37844492937576	3.35073942937857	3.28938240800705	3.46850190507125	-0.231267941130669	0.652732810829867	0.854764223296605
Merged-chr2-83728567-4	chr2	83728487	83728687	+	975.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 1 of 29)	intron (NM_008402, intron 1 of 29)	4190.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	5.34016214066513	5.00512029997447	5.40304379129953	5.71229504910452	5.80270242229639	5.4866991102186	5.73895622026533	5.83043207893211	0.53309295867667	0.0813875994884841	0.309492891547751
Merged-chr10-79533395-4	chr10	79533304	79533504	+	991.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302389, intron 1 of 5)	CpG	383.0	NM_001302442	50784.0	Mm.28873	NM_015817	ENSMUSG00000052151	Plpp2	Lpp2|PAP2-G|PAP2-gamma|PAP2c|Ppap2c	phospholipid phosphatase 2	protein-coding	5.60276588005579	5.47564567773256	6.04871230919358	5.38947492961693	5.47266926109457	5.55783062498762	5.01193885222878	5.37777225966932	-0.46794619936681	0.140431685972025	0.416699473728646
Merged-chr10-96934904-3	chr10	96934814	96935014	+	879.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-100854.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	3.6685219753125	3.43507194805928	3.15459399060486	3.48213248079495	3.5883072231371	3.58000055700711	3.50507729056259	3.34777574345392	0.204763684281655	0.6941140995557	0.87574740044461
Merged-chr7-4526454-4	chr7	4526249	4526449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033548, intron 9 of 11)	intron (NM_001033548, intron 9 of 11)	-3821.0	NM_009406	21954.0	Mm.27674	NM_009406	ENSMUSG00000035458	Tnni3	Tn1|cTnI	troponin I, cardiac 3	protein-coding	4.62737855037211	4.61431989043189	4.97118924723627	4.18053140539348	4.89535228097583	5.20861114128205	5.1596255183976	5.09481072905616	0.983160856852604	0.00740496888519563	0.0634346227318979
Merged-chr4-8822721-4	chr4	8822604	8822804	+	985.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 7 of 36)	intron (NM_001355382, intron 7 of 36)	71380.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	4.69350151368679	4.8638931481378	5.12683910904864	5.45746739044723	4.70595865712222	4.95376735946087	4.86917210274945	5.02823123558482	-0.394110864868726	0.276074355724409	0.588116016284595
Merged-chr13-6836936-4	chr13	6836861	6837061	+	840.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-188190.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	3.48081172111597	3.31151148302162	3.59131325315899	3.64423149031855	3.84107799912427	3.47424281003754	3.57697076058344	3.64089066746519	0.404102476057778	0.419927592507662	0.712991415178256
Merged-chr11-84619853-4	chr11	84619760	84619960	+	944.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3Cz|LINE|L1	94200.0	NR_038057	78365.0	Mm.260345	NR_038057	ENSMUSG00000087211	Lhx1os	1500016L03Rik|Lhx1as	LIM homeobox 1, opposite strand	ncRNA	5.18346348433707	4.91904645780532	4.83610833091287	5.26282928606642	5.43211550352579	4.8903883699414	4.81357421550817	5.26886586754386	0.125154407029078	0.717642946919016	0.887117405372408
Merged-chr8-35716678-2	chr8	35716580	35716780	+	1000.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	109879.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	3.60445888590467	3.46622542048208	3.68631777180561	2.6751860300341	5.98257948568339	5.86090334400372	5.67096427299409	5.21248275857257	6.95921964063022	1.3009278596551e-28	1.30420766369564e-25
Merged-chr15-81084045-4	chr15	81083966	81084166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	20981.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	6.32211824895354	6.56080930484299	6.8978054339864	6.87089867153831	5.90461805758506	5.86587257931063	6.32738440929908	6.37351971678443	-0.826729540215733	0.00148792682516801	0.0185447633494368
Merged-chr16-91438231-4	chr16	91438124	91438324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26880.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	6.58688978089849	6.56959695082147	6.40223680486165	6.65974157296773	6.4994638466567	6.73176524018224	6.55444718179223	6.53529506710103	0.0164551847399473	0.937472321786945	0.977342790666601
Merged-chr14-51266273-4	chr14	51266186	51266386	+	705.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10174.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	4.28294112760647	4.24639891255321	3.76344693063277	3.74577043703243	4.40455190816717	4.17552616535802	4.77876724244309	3.99396413099378	0.852351027753722	0.0678774206005932	0.27802088392966
Merged-chr9-99240766-3	chr9	99240658	99240858	+	917.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2583.0	NM_023873	68121.0	Mm.288739	NM_023873	ENSMUSG00000056267	Cep70	6720484E09Rik|Bite|C030018L16Rik	centrosomal protein 70	protein-coding	3.82242051734514	4.12588429673302	4.11492279263306	4.27720770864815	3.86206009664182	3.88667491588645	3.75303274657431	4.0223804386917	-0.61432919530363	0.165834293349526	0.456772663351364
Merged-chr2-69635899-4	chr2	69635754	69635954	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-11401.0	NM_028284	72569.0	Mm.252136	NM_028284	ENSMUSG00000063145	Bbs5	1700049I01Rik|2700023J09Rik	Bardet-Biedl syndrome 5 (human)	protein-coding	5.01341457026012	4.49411614286638	5.28768181614583	3.83184353796536	4.5700909076375	4.76024228472387	4.79232481657013	4.70091251053323	-0.130168335844588	0.782396890942409	0.91529005173258
Merged-chr16-92696828-4	chr16	92696737	92696937	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009821, exon 1 of 5)	5' UTR (NM_009821, exon 1 of 5)	492.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.66893404973156	4.46945538615668	4.70955905765669	4.72850907077469	4.88844024215624	4.92165630341614	4.52175709705155	5.1891526167753	0.513275258834023	0.148339386240999	0.430071295027352
Merged-chr2-27716515-4	chr2	27716406	27716606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	5923.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	6.61240608585238	5.85605506309172	7.06062014827107	6.95238308268119	6.04605878946344	6.04215572025266	6.40424251366649	6.3063742352514	-0.727246084767505	0.0166035139555794	0.112726203724169
Merged-chr2-122369180-4	chr2	122369067	122369267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013829)	promoter-TSS (NM_001013829)	-249.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	8.05898141604792	7.94084167279796	7.9861882929008	8.30097591136699	8.21440876850697	8.01671088836328	8.38693143089226	7.7696429262434	0.0437990131761934	0.822015614869842	0.931969493426564
Merged-chr1-169532308-3	chr1	169532212	169532412	+	849.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023284)	promoter-TSS (NM_023284)	-848.0	NM_001355159	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	3.38189705844563	3.21325169392084	3.14071975541411	3.39499129173087	3.55989276737791	3.31622194303396	3.42252031100826	3.43438102807069	0.509362704833321	0.331295248260039	0.642467227210669
Merged-chr7-80838482-2	chr7	80838382	80838582	+	787.025024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23626.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	3.17172714043372	3.16043862400871	3.48566551771872	2.96830620747626	2.96988047743037	2.86833483323632	3.27185724690594	3.33658358273715	-0.303997642393159	0.618675202973066	0.836039000482598
Merged-chr6-13677567-4	chr6	13677450	13677650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175312, intron 1 of 4)	CpG	416.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	5.70071426565179	6.18784749596362	6.22783315001517	5.96671596783226	6.25849862696206	6.03899722067812	6.35307643593299	6.24193238262048	0.301942940468261	0.221025021266098	0.529067123644727
Merged-chr14-7972148-4	chr14	7972091	7972291	+	968.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007870, intron 6 of 7)	intron (NM_007870, intron 6 of 7)	21991.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	4.80329391670051	5.00426284139563	4.61051914485372	4.42544453579569	5.07949746840013	4.51415310654651	4.66954171694371	4.72701863680465	0.121706112473576	0.748444026733234	0.900999421474581
Merged-chr4-117218686-4	chr4	117218599	117218799	+	973.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145637, intron 7 of 12)	intron (NM_001145637, intron 7 of 12)	33218.0	NM_001145637	381544.0	Mm.23504	NM_001033774	ENSMUSG00000060268	Armh1	1700012C08Rik|Gm1661|Gm1662|Ncrna00082	armadillo-like helical domain containing 1	protein-coding	5.23377525725499	5.67065643359989	5.5804697807417	5.26865448245975	4.89834616523822	5.14091651765882	4.77973569712808	4.84084916737365	-0.993651023613931	0.00204005034016022	0.0237385553641105
Merged-chr3-69679985-4	chr3	69679906	69680106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR1C|LTR|ERV1	-42049.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	5.77386987042421	5.96408749481211	5.38691418788511	5.31100590907436	5.94955752778888	5.94927800481737	5.6467783396552	5.77077349728143	0.34916691432306	0.231690767847334	0.541246385108847
Merged-chr13-64172326-4	chr13	64172222	64172422	+	947.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019986, intron 2 of 7)	intron (NM_019986, intron 2 of 7)	10456.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	4.05265414428992	4.23083278479828	4.61939381769497	4.70978479611828	4.77219866874154	4.34740666770364	4.80633179261789	4.72600167236785	0.508332277877392	0.21693293178961	0.52367459648147
Merged-chr5-23433950-4	chr5	23433830	23434030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026984)	promoter-TSS (NM_026984)	423.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	6.64336220983679	6.83969618191166	6.47265482801629	6.60506664226833	6.98222935343814	7.34997723458323	7.02862876126639	6.86029222194442	0.583852483787976	0.0062368720802577	0.0558548462255489
Merged-chr4-119415570-4	chr4	119415457	119415657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001270435)	promoter-TSS (NM_001270435)	-36.0	NM_029286	73332.0	Mm.425204	NM_028506	ENSMUSG00000028637	Ccdc30	1700001O02Rik|1700041C02Rik|1700111D19Rik|4930445I03Rik	coiled-coil domain containing 30	protein-coding	5.73944615518345	6.33467498595901	5.76895389840158	6.55745491863301	6.42907470739506	6.17978657095615	6.78668188583677	6.65989690612646	0.539944308645183	0.0689612092424614	0.280648937781857
Merged-chr11-58965687-1	chr11	58965587	58965787	+	584.0	f1_balb.idr	intron (NM_031172, intron 2 of 6)	intron (NM_031172, intron 2 of 6)	1906.0	NM_031172	56631.0	Mm.179733	NM_031172	ENSMUSG00000036964	Trim17	Rnf16|terf	tripartite motif-containing 17	protein-coding	3.13775111819109	2.97404436462138	3.34449385643861	2.97034398222987	2.95973594611498	3.00026391803887	2.8831446274205	3.01937871277735	-0.594816436775477	0.319114180839862	0.630985840268918
Merged-chr13-43786464-4	chr13	43786361	43786561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	1349.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	7.04715773371897	7.359305184611	7.13256998067781	7.06670273654224	7.1892914750869	7.33234384693116	7.10828655910422	7.09219292572099	0.0374983826056018	0.84402259411451	0.94088019607581
Merged-chr5-122911390-2	chr5	122911255	122911455	+	930.25	f0_balb.idr|f1_balb.idr	intron (NM_001003953, intron 12 of 22)	intron (NM_001003953, intron 12 of 22)	-11005.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	3.45010731278832	3.57138144001845	3.29775716653529	3.4933732588879	2.86257292229101	2.7987537023835	2.76694630546269	3.12248455342901	-2.50493009417818	0.000222762375217169	0.00397892173289407
Merged-chr17-33771132-4	chr17	33771027	33771227	+	980.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	10448.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	5.03213643521556	4.74553654943969	4.75402380910801	4.73296871514524	4.97498230580833	4.84925259988472	4.6926423669802	4.9654151700269	0.136331682681592	0.680568342108133	0.868928920613391
Merged-chr14-31131034-4	chr14	31130939	31131139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2109.0	NM_001308464	66487.0	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	6.21824005452503	6.41449881320017	6.23901996335744	6.23649128580993	6.33586801444001	6.31453379072793	6.78689937194749	5.95158759568433	0.154909519683211	0.54420837593864	0.795184841840149
Merged-chr11-87086805-4	chr11	87086692	87086892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024262)	promoter-TSS (NM_024262)	-15.0	NM_024262	74133.0	Mm.23257	NM_024262	ENSMUSG00000020495	Smg8	1200011M11Rik	smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	6.78368646328422	6.59777054622705	6.29552372403218	6.52504280235858	6.57361082387752	6.21833512339771	6.42562493573343	6.3659409108294	-0.219918287944934	0.335896369987813	0.646043226312217
Merged-chr7-104314894-3	chr7	104314806	104315006	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040749)	promoter-TSS (NR_040749)	-125.0	NR_040749	622070.0	Mm.486406	NR_040749	ENSMUSG00000087175	Gm15133	-	predicted gene 15133	ncRNA	3.74236559341021	3.58780298871042	3.74292640869577	2.44369337562095	6.42537376647932	6.27111346707852	5.99183706464307	6.05450631552495	9.89082179000038	7.78439815398255e-27	6.29642813866277e-24
Merged-chr11-59839825-4	chr11	59839726	59839926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011991)	promoter-TSS (NM_011991)	-59.0	NM_011991	26572.0	Mm.40	NM_011991	ENSMUSG00000019373	Cops3	Csn3|Sgn3	COP9 signalosome subunit 3	protein-coding	6.42552556908263	6.47366985439381	6.05130389434025	6.33861989925811	6.30639245479288	6.37973799215242	6.53811828469951	6.52053821645043	0.14854254057325	0.511219879017027	0.775237968566043
Merged-chr10-4431007-1	chr10	4430907	4431107	+	811.0	f0_balb.idr	intron (NM_001358796, intron 1 of 13)	MTEb|LTR|ERVL-MaLR	1381.0	NM_025343	66084.0	Mm.153111	NM_025343	ENSMUSG00000019763	Rmnd1	0610042C05Rik|AA408137|AI462664|AW536662	required for meiotic nuclear division 1 homolog	protein-coding	3.56408915415185	3.85242226489919	4.67086602713126	4.04498458680933	3.82117066337708	3.87407772440311	3.89981459921542	4.01317710002778	-0.514270297853889	0.316521233094051	0.628477595692966
Merged-chr6-136827497-5	chr6	136827436	136827636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021714, intron 1 of 11)	intron (NM_021714, intron 1 of 11)	680.0	NM_021714	60321.0	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	4.73931104638262	4.85723807788897	5.11988547679405	5.13668865304548	5.15598645841198	5.38780196080252	5.18908513859326	5.50858618263021	0.60634218008172	0.0567919549445456	0.249647239733234
Merged-chr7-73546721-3	chr7	73546621	73546821	+	800.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037569, intron 4 of 4)	intron (NR_037569, intron 4 of 4)	-4975.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	3.87347197059131	3.63359616892798	3.73077006795535	3.92251562101743	3.53958231118616	3.56403086486036	3.66447989908826	3.6234430400747	-0.639140784824409	0.177044896920377	0.472289587325445
Merged-chr4-9650079-1	chr4	9649979	9650179	+	785.0	f1_balb.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	-6362.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	2.41428533106048	2.50345616179767	2.57204511161384	2.41138589280755	2.89799881303423	2.8907849462552	3.19520197241614	2.95714353714938	2.58553686752904	0.0001263196576884	0.00246810510969054
Merged-chr8-13785737-5	chr8	13785595	13785795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025924)	promoter-TSS (NM_025924)	80.0	NM_025924	67031.0	Mm.44858	NM_025924	ENSMUSG00000038398	Upf3a	2600001C03Rik|4930546M19Rik|RENT3A|UPF3	UPF3 regulator of nonsense transcripts homolog A (yeast)	protein-coding	7.51489247932623	7.64671278601031	7.8520956868856	7.38352860150313	7.35629308824521	7.80721048004367	7.29190783490883	7.32328658761563	-0.193388551482337	0.352191922886682	0.659353818166894
Merged-chr3-58122882-4	chr3	58122780	58122980	+	876.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40927.0	NR_040538	67850.0	Mm.416968	NR_040538	ENSMUSG00000100666	1700007F19Rik	-	RIKEN cDNA 1700007F19 gene	ncRNA	4.34901152098564	4.75927251362	4.14945872846645	4.53489204699564	4.70638409151789	4.69506398075305	4.23541413337229	4.59897068444383	0.222378567669461	0.57579563617907	0.813185666420437
Merged-chr5-137107224-2	chr5	137107124	137107324	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8983.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	3.44425890923731	3.42421827383692	3.19129019928423	3.64158897001223	3.64682561991797	3.72396724888126	3.43193103567759	3.65476439003871	0.544808853601707	0.295624865788355	0.607543881101468
Merged-chr15-80030659-4	chr15	80030623	80030823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-15915.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	6.29449782903117	6.31943909482701	6.39740321953494	6.35262924766671	5.89924947680371	5.84752800111599	5.69513668208145	6.05887117446023	-0.712968391349028	0.0023700384040431	0.026627192501104
Merged-chr10-79856073-4	chr10	79855959	79856159	+	884.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077363, intron 1 of 13)	intron (NM_001077363, intron 1 of 13)	-1088.0	NR_029447	414101.0	Mm.401339	NR_029447	ENSMUSG00000091994	E130317F20Rik	-	RIKEN cDNA E130317F20 gene	ncRNA	4.39097145250555	4.23687990860937	4.07710740726036	3.77244759470434	4.40745747408547	4.52146596657572	4.15677856604007	4.17251258445303	0.497848806058782	0.24713043787766	0.558168726560377
Merged-chr15-102381755-4	chr15	102381664	102381864	+	874.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14796.0	NM_001348205	170574.0	Mm.263284	NM_130458	ENSMUSG00000060284	Sp7	6430578P22Rik|C22|Osx	Sp7 transcription factor 7	protein-coding	3.63080083150664	3.79114203757877	3.94765567621294	3.90863912451903	4.05512976171096	3.68690256978457	3.93062913202327	3.99109774631587	0.277466547971422	0.538409600423799	0.7915779929063
Merged-chr7-132735393-4	chr7	132735287	132735487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347630, intron 3 of 3)	intron (NM_001347630, intron 3 of 3)	41529.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	6.63044554264813	6.85661192854096	6.74886830472271	6.75685966494519	6.25608932815058	6.51681768758395	6.84651977872435	6.23370427181008	-0.3912366912624	0.0933809095661667	0.334219737655465
Merged-chr6-83010202-4	chr6	83010100	83010300	+	929.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 7 of 9)	RMER6B|LTR|ERVK	23271.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	4.02342209428579	4.08093164169915	3.72020130099232	4.08750061483456	4.1845665467435	3.58612605061147	3.96098471598513	3.6600647342957	-0.296865330099844	0.541512640500267	0.793272720948538
Merged-chr5-115187996-4	chr5	115187912	115188112	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310712, intron 1 of 5)	intron (NM_001310712, intron 1 of 5)	-1891.0	NM_001310715	29867.0	Mm.38551	NM_013879	ENSMUSG00000029544	Cabp1	caldendrin	calcium binding protein 1	protein-coding	5.62519969342385	5.75633092596103	5.52255971273118	5.35051919541563	5.71896890443517	5.13743234871595	5.32275508223664	5.46353936987715	-0.206628927783381	0.493370802286672	0.764142062450997
Merged-chr2-71529199-2	chr2	71529099	71529299	+	965.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010053)	promoter-TSS (NM_010053)	-246.0	NM_010053	13390.0	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	3.01974788561275	2.91417076694607	3.33279626245467	2.84765930425683	2.96945010394033	3.06971078513486	2.75184002889023	2.75845294020943	-0.601728435509003	0.347278927704921	0.655414736712412
Merged-chr10-21941369-3	chr10	21941257	21941457	+	785.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 2 of 13)	intron (NM_001161845, intron 2 of 13)	-37315.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	3.06974459164618	3.18062501793878	3.00418573153531	2.95891309418768	3.43904141377928	3.18076649270226	3.48708241486987	3.13134928874749	1.03870034962711	0.0610633441757007	0.26121324718235
Merged-chr16-90727444-4	chr16	90727348	90727548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025642)	promoter-TSS (NM_025642)	-77.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	8.16510838422844	7.86859393872538	7.57304138204229	7.83087862126693	8.14826742968158	8.04529186123868	8.12771936850373	8.06283912785943	0.287802652797726	0.109968465754804	0.366215108014911
Merged-chr2-118926490-4	chr2	118926366	118926566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028117)	promoter-TSS (NM_028117)	-31.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	5.37908275674202	4.96254853167157	5.09568903538058	5.52944560950406	5.38033618624427	5.08596736721525	5.40805344363441	5.53532822721092	0.156094508909126	0.623958396816759	0.839195335242146
Merged-chr2-160335251-4	chr2	160335143	160335343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7749.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	5.34315288570672	5.73165393746487	5.63470824027917	5.57088158111241	5.97073530674243	5.48694138448954	6.02153143657525	5.70712929700796	0.406847636449158	0.14304562841073	0.421155062237233
Merged-chr10-118053240-4	chr10	118053143	118053343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-88544.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	7.04661523729058	7.18631604173707	7.54827487583988	7.31613507442087	7.23397087064714	7.07941965482037	7.10859218307675	7.15100821989629	-0.190076805682144	0.331777248451007	0.642849806093321
Merged-chr4-141659403-3	chr4	141659308	141659508	+	706.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	4707.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	3.04365802211992	3.36963297716164	3.04400875054834	3.06383653844937	3.00406054164924	3.39242315449164	3.09575796224545	3.16508419579024	0.116929294103684	0.838657927502964	0.938804652309211
Merged-chr6-54284515-4	chr6	54284419	54284619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 7 of 12)	intron (NM_001163640, intron 7 of 12)	11697.0	NM_023543	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	6.90523351199846	6.85646312146713	6.88055205159971	7.19073167207724	6.22296411296706	6.60744455391377	6.7509126297855	6.72290506162577	-0.560015620905476	0.0137968263476647	0.0989764465430789
Merged-chr5-139286751-4	chr5	139286640	139286840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	33243.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	6.51164072415478	6.66799619659568	6.39242494303285	6.17323355476749	6.57741214704123	6.62159760830244	6.70299858616375	6.23469377115322	0.160069007789988	0.500825053989824	0.769017904448726
Merged-chr15-93335968-4	chr15	93335885	93336085	+	739.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028315, intron 2 of 4)	intron (NR_028315, intron 2 of 4)	950.0	NR_028315	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	3.79992290931026	4.09217435463109	3.80046045128839	3.48391113488343	3.9237580552898	4.07629019204956	3.55393767709494	4.24611556277486	0.464811960061581	0.349398578436327	0.656941686201213
Merged-chr11-119229128-4	chr11	119229012	119229212	+	894.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172443)	promoter-TSS (NM_172443)	540.0	NM_175430	207607.0	Mm.189885	NM_175430	ENSMUSG00000039963	Ccdc40	B930008I02Rik	coiled-coil domain containing 40	protein-coding	4.91702572732272	4.33285690055102	4.3043435204076	3.95196916013931	4.52884588344079	4.96026249694142	4.46641363882293	4.64445623334516	0.548149184402499	0.204172072584228	0.50737576212243
Merged-chr7-128133256-3	chr7	128133140	128133340	+	626.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021334, intron 6 of 29)	intron (NM_021334, intron 6 of 29)	3672.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	3.52575135836608	3.34583286205269	3.36344916575904	3.3552504558973	3.41100181136552	3.35426893144128	3.29262527983954	3.62199817660343	0.104832590558783	0.837466312873503	0.938339070778508
Merged-chr5-113835216-4	chr5	113835105	113835305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4704.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	6.39879903491445	6.43989716978807	6.27246309530638	6.52234424632207	6.30653614098012	6.32881968575152	6.2212132178828	6.32416025400512	-0.188053716963119	0.386733033239407	0.687797608117846
Merged-chr5-113776379-4	chr5	113776257	113776457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025526, intron 3 of 4)	intron (NM_025526, intron 3 of 4)	3545.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	6.03460627487063	6.26060434119157	5.39513852490178	5.95098806871608	5.84533252991974	6.07910435361103	6.04579051010633	6.22520142466816	0.155002890155854	0.582770501207242	0.816777579274426
Merged-chr10-59636887-4	chr10	59636778	59636978	+	994.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20186.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	5.58073585799919	5.38814192513137	4.98972870741705	5.55445206720746	5.66818444633064	5.09027902316124	5.47697910728406	5.36113939292139	0.0342316541871727	0.913855737624563	0.967694418307962
Merged-chr6-54772219-4	chr6	54772122	54772322	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-44694.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	4.07262396803121	4.34683480070798	4.53970181771604	4.44038156076655	5.20228752010478	4.80068504745086	5.04482717128931	5.00790603121871	1.38061225644483	0.000129485933913929	0.00252097354760928
Merged-chr16-91841132-4	chr16	91841028	91841228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 18 of 28)	intron (NM_001110275, intron 18 of 28)	90502.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	7.63919985937029	7.77666504208577	7.63188993216194	7.90023742181743	7.61925672732027	7.55178196217081	7.75575379251922	7.71814234606393	-0.115627287520698	0.503656295143327	0.770507049123075
Merged-chr6-52424654-4	chr6	52424567	52424767	+	805.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-67784.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	4.19280825209954	4.24397820645658	4.2377200313589	4.17853566492406	4.14865558144223	3.82855175185162	4.45336563316106	4.09758844389234	-0.145075804003375	0.728761901835585	0.892200609060115
Merged-chr19-4044348-3	chr19	4044254	4044454	+	890.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-2133.0	NM_181796	14869.0	Mm.441542	NM_181796	ENSMUSG00000038155	Gstp2	GSTpiA|Gst-3|Gst3	glutathione S-transferase, pi 2	protein-coding	3.81430582282212	3.83654030019894	3.26749030742646	3.16752257614387	3.5267137327001	3.68827672230623	3.44374223840929	3.56763514788492	0.0176616603919437	0.97460061019206	0.990944887263205
Merged-chr5-16973562-6	chr5	16973549	16973749	+	952.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	419748.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	4.86881670125075	4.00655380765841	4.3684798519218	4.28045149439197	4.96005188660536	4.94083111736576	4.48182789835717	4.41196719938826	0.687882467676023	0.10626461229403	0.359240505270803
Merged-chr13-37331183-4	chr13	37331098	37331298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14147.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.67574389056035	5.38572676058553	6.26646396620806	6.13003206217398	5.8663961319503	5.52358018290635	6.01563794202414	5.93804213437735	-0.107189968329377	0.727987310286824	0.89177588928748
Merged-chr6-118139188-4	chr6	118139078	118139278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030165)	promoter-TSS (NM_030165)	-38.0	NM_030165	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	7.93809553997396	8.03091034574423	8.13116314980506	7.75880916713426	8.19872979495459	8.15914219191324	8.15804951606304	7.89784337066036	0.188900756339679	0.277657168423059	0.589700641340894
Merged-chr5-65883585-4	chr5	65883492	65883692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	20023.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	5.41761441121697	5.40400671409012	5.81322224179033	5.89218041279611	5.31325677732261	5.79295922920155	5.73781425117821	5.78629394527448	-0.00287925824181076	0.992301151411308	0.99713419623776
Merged-chr7-46739168-3	chr7	46739057	46739257	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	3823.0	NM_001357493	20208.0	Mm.148800	NM_009117	ENSMUSG00000074115	Saa1	Saa-1|Saa2	serum amyloid A 1	protein-coding	3.18290131760345	3.08003931768604	3.18328947121988	3.63855211125937	3.11057071268601	3.35480007603061	3.44114574831868	2.98597159479464	-0.252365997243605	0.677761534009075	0.867824936665442
Merged-chr8-66861120-4	chr8	66861022	66861222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163564, intron 1 of 7)	CpG	905.0	NM_001163564	234344.0	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	5.10980041739747	4.84894532504146	5.3955296258318	5.35582772768611	5.32555825645448	5.45160683758678	5.5268887198435	5.62384509512593	0.493812659927508	0.106737118367827	0.360292814260666
Merged-chr9-52288082-4	chr9	52287964	52288164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119953.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	6.33025284747288	6.17324584456967	5.98904785306108	6.44140521950488	6.05842996960948	5.88624236980473	6.43187032651811	6.34433218331926	-0.0903805731574516	0.72286334049312	0.88928524667289
Merged-chr5-144248379-4	chr5	144248279	144248479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163709, intron 1 of 2)	intron (NM_001163709, intron 1 of 2)	3942.0	NM_001163709	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	6.64059610663645	6.34119510569429	6.69849498537243	6.39957115249041	6.32420604445981	6.39064174966785	6.05367620008432	6.4326553595274	-0.312238118794657	0.17661813066493	0.471796964745143
Merged-chr17-26661919-4	chr17	26661814	26662014	+	970.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-14482.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	5.50100678476595	4.70543738192102	5.06679610268572	5.33236548311024	5.29770653407598	4.97890118423187	5.07610753554579	5.36922513836763	0.00971214349633566	0.977367238891436	0.991888117862217
Merged-chr2-8660717-4	chr2	8660621	8660821	+	931.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-528794.0	NR_038180	73438.0	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	5.00471579142834	5.23066078576707	5.228317576805	5.53087649381113	4.6984475451034	4.63746136087618	5.20216712279545	4.81555492217309	-0.817276786587607	0.0179140639296765	0.118805269625916
Merged-chr19-47579599-7	chr19	47579526	47579726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009289)	promoter-TSS (NM_009289)	-393.0	NM_009289	20874.0	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	5.80708635771856	5.8658760800062	5.48450543685277	5.52540587456089	5.81609669509216	6.00621681734344	5.95480224531831	5.93917293225191	0.413031390217637	0.109847096254195	0.366014720732016
Merged-chr5-136905882-2	chr5	136905782	136905982	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2268.0	NM_026073	67286.0	Mm.41779	NM_026073	ENSMUSG00000007987	Ift22	3110017O03Rik|AI835745|AI847427|Rabl5	intraflagellar transport 22	protein-coding	1.90619587310959	2.0702898478324	1.90631267668954	2.01253273273621	2.09943820199383	2.43699136082141	2.25967010689797	2.26753475819442	1.92932980620218	0.0224319892893485	0.138292609522476
Merged-chr5-122769435-4	chr5	122769303	122769503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 1 of 16)	ID_B1|SINE|B4	10007.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	6.91781735801667	7.16212610119129	6.96899518158207	6.89049305112932	6.74442559320748	6.54653677223979	6.58431405492899	6.66048155749506	-0.488097398968848	0.015864870723979	0.109042645158565
Merged-chr8-77444887-4	chr8	77444698	77444898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-72258.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	5.03611339151913	5.03496240366646	5.77102413094029	5.46562364650229	5.05572058686856	5.3840472041231	5.54589101450195	5.26890543349285	-0.0875187311116231	0.795032796222158	0.920725521050451
Merged-chr19-56801120-3	chr19	56801015	56801215	+	812.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170757, intron 7 of 14)	intron (NM_170757, intron 7 of 14)	12568.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	3.81467373565042	3.96307170070137	4.13947683549951	4.05311847531235	3.72180896093987	3.82420267416084	4.03677042499857	3.58367576840361	-0.570964701618113	0.212424760523107	0.517371498007674
Merged-chr19-24990616-4	chr19	24990510	24990710	+	981.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8919.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	5.54344090622224	4.87079212894217	5.06318204094236	5.30293789143436	5.18085667510528	5.63941519000147	5.43939635470498	5.40886623780946	0.35458190198102	0.26737464083648	0.579062239399373
Merged-chr17-3557739-6	chr17	3557476	3557676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045302)	promoter-TSS (NR_045302)	137.0	NM_146074	224481.0	Mm.226554	NM_146074	ENSMUSG00000036983	Tfb1m	AI429207	transcription factor B1, mitochondrial	protein-coding	7.24474897717861	6.90942232095555	7.62832169816543	6.99872872581405	6.97027644485176	7.26436364687335	7.12178079907402	7.25153652965949	-0.0872187235037807	0.700040324542272	0.879020750460333
Merged-chr19-5894135-4	chr19	5894008	5894208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362045)	promoter-TSS (NM_001362045)	20.0	NM_001362045	332359.0	Mm.329642	NM_198634	ENSMUSG00000044390	Tigd3	-	tigger transposable element derived 3	protein-coding	5.95017406536035	6.18923151929432	6.08136829748746	5.70810930077582	6.07379952540394	6.39206154266273	5.75106613672096	6.21346664384885	0.221674852623654	0.409063392889721	0.704791463679563
Merged-chr13-63634517-1	chr13	63634417	63634617	+	543.0	f1_c57bl6.idr	Intergenic	Intergenic	-61057.0	NM_001328514	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	2.48316663768454	2.50257564497241	2.48336241225045	2.38687135811042	3.04062060039404	2.97536409883901	3.46191030965591	3.30293298797972	3.75714701939756	9.3626695715136e-07	3.302405636426e-05
Merged-chr2-11602646-3	chr2	11602543	11602743	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 1 of 11)	intron (NM_152824, intron 1 of 11)	556.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	3.82951452819889	3.90506061569213	4.86261960265219	4.64736882765244	4.1309014499195	4.29042744060292	4.1923034196819	4.34282016732291	-0.361193792365652	0.46017910296213	0.742490742225721
Merged-chr13-9173597-4	chr13	9173500	9173700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001311117, exon 17 of 17)	3' UTR (NM_001311117, exon 17 of 17)	79719.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	6.57533990506832	6.84046395915569	6.77246655084399	6.9534158936921	6.6953535209803	6.5980178971078	6.4058538690037	6.60400120918266	-0.31448025159709	0.139660944073274	0.415585042485499
Merged-chr2-30133223-4	chr2	30133115	30133315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146252)	promoter-TSS (NM_146252)	-531.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	6.13445907443011	6.49097295302686	5.73939903372996	5.57206540412447	6.37172419881311	6.56259928310404	5.9337167486072	5.84006554921562	0.282305618404195	0.37526715420785	0.678274822106106
Merged-chr7-137411089-4	chr7	137410956	137411156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029886)	promoter-TSS (NM_029886)	-300.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	7.27307396750718	7.06285891900647	6.69465957330232	7.0618237102418	7.3111211103589	7.41931395257779	7.64682408627263	7.43685505323945	0.561477891912486	0.00571761139691856	0.0524653682636671
Merged-chr2-102500206-3	chr2	102500118	102500318	+	868.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-48426.0	NM_010218	14221.0	Mm.29730	NM_010218	ENSMUSG00000075012	Fjx1	-	four jointed box 1	protein-coding	3.38229479548935	3.43346613761707	3.44554108551256	3.32070447744483	3.87262050763243	3.98527992449664	3.60334984196307	3.81512770665463	1.37469823227984	0.00379354462342929	0.038428667663316
Merged-chr15-82341292-4	chr15	82341090	82341290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177391)	promoter-TSS (NM_177391)	11.0	NM_177391	338368.0	Mm.444916	NM_177391	ENSMUSG00000049687	Fam109b	C920005C14Rik|IPIP27B|Ses2	family with sequence similarity 109, member B	protein-coding	4.7230908948883	4.83261591665526	4.90613736643193	4.65197691362153	4.79851864658495	5.17372890108458	4.57971204641263	4.64001617288833	0.0858375260384453	0.807323587227053	0.925729780371477
Merged-chr10-71362009-4	chr10	71361908	71362108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	intron (NM_027184, intron 1 of 5)	14245.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	6.08516345730049	5.9924343916051	6.18360297068575	6.35725703680381	6.06943037123379	5.74815079762175	5.76166453950844	5.83696649085563	-0.473461619422486	0.0611648351850208	0.261559135093697
Merged-chr9-31009479-4	chr9	31009374	31009574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-21170.0	NM_001115130	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	6.35224365730982	6.440322286935	6.04316948361776	5.84688206978246	6.55380277690226	6.12962275442959	6.07618383292054	5.92401873541157	0.0348547360839616	0.900294038171865	0.963060254629324
Merged-chr13-24442493-4	chr13	24442401	24442601	+	906.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111110, intron 11 of 16)	intron (NM_001111110, intron 11 of 16)	27379.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	4.62055399651671	4.77349705300407	4.7000621701228	5.34195729364753	4.4830473180824	4.43106806423874	4.75130704173178	4.29816477524393	-0.880916010511802	0.0276162390756562	0.158544517073627
Merged-chr2-166688176-4	chr2	166688044	166688244	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	25688.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	3.32110079209007	3.65576080907908	3.38581171978738	3.67955064704098	3.90590166909078	3.62099596434707	3.6014528415299	3.66542254367039	0.552449417147642	0.274971092264015	0.58673095357303
Merged-chr1-39736457-1	chr1	39736357	39736557	+	661.0	f0_balb.idr	Intergenic	Intergenic	-15468.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	3.25400888622989	2.97997881723978	3.30364149698256	3.20586343204386	2.5913543613869	2.9539321866693	2.69331504261967	2.84347793538826	-1.99634021889863	0.00348144774997916	0.0359177836769655
Merged-chr5-36792090-4	chr5	36791987	36792187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4667.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	5.62121549920997	5.31155167138232	5.24913584454572	5.51332733890928	5.3713241708247	5.58067948858309	5.66564571572033	5.51475505879056	0.161243308400761	0.566122938036188	0.807783748011785
Merged-chr9-45486779-4	chr9	45486667	45486867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-55535.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	4.85926999525003	4.77302282773685	5.18375166658921	5.12524581770236	7.00258892304394	6.94503566172111	7.15923066295998	7.00012307977936	3.12083983348379	4.4201360575513e-29	4.99398197524515e-26
Merged-chr2-60865172-4	chr2	60865066	60865266	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	16272.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	5.55621045191404	6.05989214239053	5.50194621168237	5.66341674015423	5.21754924457397	5.56077041616826	5.68063217157011	5.28374510396633	-0.470977498338778	0.116093339679987	0.376997482781229
Merged-chr19-29047950-4	chr19	29047861	29048061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021299)	promoter-TSS (NM_021299)	-59.0	NM_021299	56248.0	Mm.196067	NM_021299	ENSMUSG00000024782	Ak3	AA407498|AI506714|AK-3|Ak3l|Ak3l1|Akl3l	adenylate kinase 3	protein-coding	5.26822007842125	5.54700753304468	5.51699585169948	5.38321958798865	4.80790193808319	5.21333726582308	5.14898589541424	5.10356343813314	-0.680785496024879	0.0250836937046146	0.148736440703162
Merged-chr4-147404698-3	chr4	147404609	147404809	+	844.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	RLTR11B|LTR|ERVK	-148568.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	3.22798754440633	3.05925383788763	3.57421371165482	3.10431752565784	3.04056855580531	2.94451312530392	2.82781036055667	3.43527842017621	-0.656806017269952	0.301264825981682	0.613291264079798
Merged-chr1-75425914-3	chr1	75425811	75426011	+	700.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085370, intron 29 of 38)	intron (NM_001085370, intron 29 of 38)	-10025.0	NM_133708	69080.0	Mm.23951	NM_133708	ENSMUSG00000033021	Gmppa	1810012N01Rik	GDP-mannose pyrophosphorylase A	protein-coding	3.03876286946377	2.82652532211107	3.09385371090632	2.93532421474549	2.93424497556636	2.96702871151874	2.56932834424763	2.92077486762177	-0.511341537359763	0.427764162327011	0.71887209364609
Merged-chr6-34709482-4	chr6	34709390	34709590	+	981.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145575)	promoter-TSS (NM_145575)	46.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	4.7100664590312	5.60145786777016	4.95984154953897	5.17681797222296	4.89590421994524	5.13796530899523	5.26507892379171	5.61910486246937	0.169063376520985	0.647212028044314	0.851605116430591
Merged-chr11-75655924-4	chr11	75655811	75656011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080775)	promoter-TSS (NM_001080775)	-104.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	7.14708164883773	7.1356876059689	6.9816216754306	6.74615978697092	7.05475808972662	7.15832348094777	6.84052648982924	7.09792168902839	0.0582443614495535	0.777573931122995	0.913262978014698
Merged-chr1-33908399-2	chr1	33908299	33908499	+	938.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310484)	promoter-TSS (NM_001310484)	174.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	3.12651092984596	3.06812833952393	3.18477141086691	2.77796462640324	3.03546380843016	3.11370555786969	3.32928239191446	3.12525961914718	0.467596202608649	0.425408491615755	0.716944501591519
Merged-chr2-129380956-4	chr2	129380861	129381061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9822.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	5.9806721642638	5.96429696053365	5.49714704611947	6.23566988148492	6.13614323443883	6.24369017353049	6.15631565175996	6.31008970732422	0.375792379782737	0.157580163081893	0.444213799128952
Merged-chr11-70696981-2	chr11	70696881	70697081	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252485, intron 1 of 7)	intron (NM_001252485, intron 1 of 7)	3174.0	NM_001252482	103844.0	Mm.101581	NM_213729	ENSMUSG00000057054	Inca1	AI842396	inhibitor of CDK, cyclin A1 interacting protein 1	protein-coding	2.71407175474166	2.91111297811111	3.18966632230337	2.8767960738143	3.07203874434264	3.30408883176371	3.33578573372461	3.39806314816171	1.38009216207006	0.0209395497350492	0.132085803845362
Merged-chr1-161035791-5	chr1	161035719	161035919	+	934.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151478)	promoter-TSS (NR_151478)	903.0	NR_153812	14455.0	Mm.270065	NR_002840	ENSMUSG00000053332	Gas5	Gas-5|Mir5117|Snhg2	growth arrest specific 5	ncRNA	3.39326627134184	3.22455217255389	3.33406382623216	3.33201616865587	3.4961847951728	3.72606388166694	3.5429217992342	3.55573310257756	0.866128726817725	0.0807191480896132	0.308201423535961
Merged-chr1-167554245-3	chr1	167554177	167554377	+	948.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44085.0	NM_009107	20183.0	Mm.3475	NM_009107	ENSMUSG00000015843	Rxrg	Nr2b3	retinoid X receptor gamma	protein-coding	3.28323696257047	3.26805922265505	4.03288987526182	3.51549141368364	3.0283807918702	3.1331107907379	2.93719514228925	3.22065894283899	-1.8017564675809	0.00408135858358877	0.0406872580702052
Merged-chr6-54974748-2	chr6	54974648	54974848	+	859.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2136.0	NM_172729	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	3.39387337793087	3.42161871272565	3.39431393782191	3.09052906552076	3.65215772442666	3.50955214965898	3.54391315021589	3.60713849513033	0.905919607385463	0.0747166301878386	0.294772699127256
Merged-chr10-26827669-4	chr10	26827564	26827764	+	951.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	55152.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	4.66091883409692	4.64002349508372	4.92356089462657	4.78415055725545	5.08251267113768	4.6634897165024	4.96498634119181	4.85082282944462	0.310689433331356	0.355205471535706	0.661813745489821
Merged-chr9-118665664-4	chr9	118665566	118665766	+	987.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 8 of 27)	intron (NM_133721, intron 8 of 27)	-46026.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.15320375726011	4.83205399015856	4.61598616114285	4.56231696008141	4.98612373209004	5.1707116242141	4.94099277394333	4.92740874896922	0.423147523821556	0.218271565928046	0.525462569458937
Merged-chr3-89774617-4	chr3	89774523	89774723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027315, intron 1 of 12)	intron (NM_027315, intron 1 of 12)	1014.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	6.03335556136438	6.39514433752688	6.07755354718671	6.09790885387086	6.31495717249677	6.18858772489671	6.14774329651132	5.91552188337546	-0.00344368717018192	0.988679038747577	0.995492522898152
Merged-chr10-39435052-4	chr10	39434940	39435140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	65241.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	5.10416638319392	5.10303162019951	6.32855905412954	5.65097745477711	5.31255061514439	5.73428706084763	5.35563387448484	5.94876382481949	-0.0605860436181232	0.875726290885529	0.953330969687813
Merged-chr7-54836223-2	chr7	54836133	54836333	+	829.125	f0_balb.idr|f1_balb.idr	intron (NM_178705, intron 1 of 11)	intron (NM_178705, intron 1 of 11)	988.0	NM_178705	233271.0	Mm.387344	NM_178705	ENSMUSG00000063297	Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding	3.68936884869109	4.04770439539567	3.54474884187749	3.74370812914875	2.78213909273196	2.92993399357261	3.04545575062043	3.05344885361352	-3.82714167444966	9.05082842830617e-07	3.20034235816396e-05
Merged-chr6-15463590-4	chr6	15463494	15463694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-257067.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	5.80623041795107	5.79045780990891	5.36489001871063	5.84738109718655	5.81603929990094	5.69717219600126	5.75432638409206	5.84892175130429	0.0883188098264319	0.738929506493944	0.897069647209902
Merged-chr18-34196069-4	chr18	34195963	34196163	+	906.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24921.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	4.77055069903256	4.27170724576241	4.45511041461321	5.03534903134492	4.44977949196466	4.71574347345242	4.39014583117602	4.76812475351408	-0.210529406562938	0.603981059118484	0.828350269166784
Merged-chr14-45251813-4	chr14	45251702	45251902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027518, intron 3 of 6)	Lx7|LINE|L1	32085.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	6.09432850390306	5.58554430779203	5.99462051697402	6.23830673225926	5.62724522548217	5.72451366122412	5.89972029177115	5.83418958044847	-0.386984676584408	0.157369419839489	0.443904715296947
Merged-chr2-5992458-2	chr2	5992358	5992558	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081132, intron 8 of 21)	(A)n|Simple_repeat|Simple_repeat	40989.0	NM_001081132	326622.0	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	2.49555435920693	2.36846702459278	2.56647311354287	2.47377382578677	2.78579467821126	2.80512094520989	2.85959331200498	2.69610512062185	1.57863606772077	0.0167418731604691	0.113373588591859
Merged-chr9-7837067-4	chr9	7836977	7837177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291503)	promoter-TSS (NM_001291503)	-20.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	8.99224091643165	8.99249288835297	9.33384388907906	8.95754784926381	9.30560877241685	9.33459373816602	9.32866268084837	8.90184932637505	0.191243874084763	0.266085521779186	0.577835108604226
Merged-chr7-27490840-4	chr7	27490738	27490938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_018820)	TTS (NM_018820)	3885.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	8.36365387141836	8.3256188218768	8.59384556687561	8.40141435737764	8.54657396417965	8.54820503616152	8.75505497635412	8.3918847022158	0.180867248641133	0.261831406775271	0.573743118026569
Merged-chr1-171221053-4	chr1	171220976	171221176	+	867.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305585)	promoter-TSS (NM_001305585)	-488.0	NM_001305585	11807.0	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	4.14080037587196	4.53024739856216	4.40619716314411	3.76250411244938	4.2772717963177	4.40917854694401	4.07426407909759	4.32108977556493	0.104063214177948	0.815503225652193	0.928806709208548
Merged-chr7-132813152-4	chr7	132813035	132813235	+	986.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_212473)	promoter-TSS (NM_212473)	61.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	4.79505439175288	4.69091629278712	5.13504950113613	5.1538488800627	5.02750491651275	4.89193389954319	4.7734264365569	4.90418332851068	-0.126603656584116	0.708402505878091	0.88284651634377
Merged-chr10-34127876-5	chr10	34127735	34127935	+	946.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175449, exon 1 of 2)	exon (NM_175449, exon 1 of 2)	137.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	4.70442962761887	5.00746124560546	5.17259912893474	4.85926258508932	4.99848738858071	4.88045512798629	4.41844451436804	4.57522671585501	-0.396405213214525	0.277577372176817	0.589700641340894
Merged-chr10-75835556-4	chr10	75835468	75835668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010361)	promoter-TSS (NM_010361)	-687.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	7.76977212701944	7.87897107521772	7.82459388461586	7.90410649030307	7.77138437263292	7.60998333796484	7.53993858941056	7.81929758945556	-0.202935068850207	0.226946522529115	0.535604327821614
Merged-chr11-114679775-4	chr11	114679703	114679903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	4335.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	6.89847385502097	7.2052572941082	6.87225754502467	6.86173927729665	7.168747805769	6.85582257556008	7.21577743600717	6.99881587830947	0.148786402701019	0.466457164136729	0.746420287776482
Merged-chr14-70181302-4	chr14	70181211	70181411	+	901.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271407, intron 20 of 20)	intron (NM_001271407, intron 20 of 20)	-3639.0	NM_145978	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	4.47677173176173	4.53945343066421	4.00535917585181	3.95104952778621	5.00850167205248	5.02938111432841	4.62123477118363	4.94984504823527	1.43728970691205	0.000252443685967479	0.00439977696461292
Merged-chr5-64341863-3	chr5	64341756	64341956	+	820.222229	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001289514, intron 17 of 18)	L1ME4c|LINE|L1	111499.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	3.88687064868392	3.55199089818565	3.8395051758127	3.78341818563635	3.73667165010143	3.80230275335055	4.002764668492	3.62563197167351	0.0818217995694347	0.859842332370886	0.947043982604678
Merged-chr2-150668051-5	chr2	150667925	150668125	+	858.1866460000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_080575, exon 1 of 14)	exon (NM_080575, exon 1 of 14)	215.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	3.82197908958559	3.73755369074352	4.21553418549775	4.01957599170584	4.17916406094617	4.05524397521963	4.19626839873136	4.3335865464181	0.600392262834876	0.159679952920099	0.447369100562848
Merged-chr11-69125378-4	chr11	69125297	69125497	+	974.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011786)	promoter-TSS (NM_011786)	-980.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	4.87233174163414	4.97350763570097	4.4520887237581	4.77191771722964	4.86644312113025	5.14847872391562	4.52747595631927	5.24046223562588	0.375457922395761	0.306481538462666	0.618975748704965
Merged-chr7-143180942-4	chr7	143180840	143181040	+	938.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008434, intron 2 of 15)	intron (NM_008434, intron 2 of 15)	73686.0	NM_008434	16535.0	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	4.31125504592586	4.43346076819682	4.67099770483707	5.08984206842317	4.65872046924822	4.6357645942143	4.9576013032187	4.78034929900147	0.159316289739242	0.690119843599411	0.873731174250946
Merged-chr11-89000805-6	chr11	89000692	89000892	+	856.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	1389.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	4.1861662521156	4.29301982061456	4.32471520241708	4.032322917106	4.29494051836713	4.45315428367693	4.46695547384052	4.44632034843926	0.513422539427508	0.180505608806621	0.476893733388927
Merged-chr16-57960073-3	chr16	57959969	57960169	+	702.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-205332.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	2.76395809731951	2.85580398394103	3.03436631750748	3.08074544516412	2.2353730260475	2.36311689860382	2.33896018937735	2.42243963499931	-5.08538982318662	7.5982628708436e-06	0.000215644638310916
Merged-chr2-118520122-4	chr2	118519999	118520199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24488.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	5.36950545282273	5.84089029957659	5.51607344639135	5.61152348727203	5.62568712871875	5.51569108154795	5.48843076362159	5.303536838611	-0.182967482529959	0.516055683101438	0.777980037434655
Merged-chr1-58722470-6	chr1	58722359	58722559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	-8093.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	5.91346285903437	6.52895999575755	5.82068934261548	5.63684181996119	6.13049742533824	6.11235928268234	5.63689200303403	5.35335907170782	-0.262372734679159	0.431782812343529	0.721875955368174
Merged-chr1-52648313-4	chr1	52648229	52648429	+	959.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_024590, intron 7 of 8)	intron (NR_024590, intron 7 of 8)	17624.0	NM_001142647	227094.0	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	4.57381993086339	4.4912236947907	4.57453664524529	4.7578377184433	4.66361554739228	4.70639054867858	4.70836029431861	4.832707126794	0.235393508519363	0.49590895639862	0.766025331518119
Merged-chr3-86343673-3	chr3	86343560	86343760	+	639.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077687, intron 22 of 50)	Lx7|LINE|L1	118970.0	NM_001077688	80877.0	Mm.439825	NM_030695	ENSMUSG00000028080	Lrba	C80285|D3Ertd775e|Lab300|Lba	LPS-responsive beige-like anchor	protein-coding	3.4843012670004	3.16011501937299	3.38276904573749	3.29393068876098	3.29697931330097	3.32398838156833	3.2596286652782	3.08390539000478	-0.314201317163011	0.561832481145477	0.805175955371854
Merged-chr1-21079352-4	chr1	21079254	21079454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177409)	promoter-TSS (NM_177409)	-129.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	9.05650736873258	9.14522983082394	9.14667785846664	9.15766300462274	8.98579121760442	9.11413338836486	9.23579228184554	8.77483422112201	-0.111313003138862	0.475062129334	0.752067241311881
Merged-chr8-107056755-4	chr8	107056645	107056845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164472)	promoter-TSS (NM_001164472)	-8.0	NM_139229	97484.0	Mm.288641	NM_139229	ENSMUSG00000031916	Cog8	BB235941|C87832	component of oligomeric golgi complex 8	protein-coding	7.68853496715275	7.86526751392453	7.58493813003657	7.63447275694903	7.83856404826193	7.8504500664261	7.76419684854112	8.14840912009613	0.274653493692471	0.122925333870598	0.388651105564577
Merged-chr17-56997233-4	chr17	56997140	56997340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025538)	promoter-TSS (NM_025538)	-99.0	NM_025538	66400.0	Mm.196150	NM_025538	ENSMUSG00000002661	Alkbh7	2310045B01Rik|2510008E23Rik|Abh7|Spata11	alkB homolog 7	protein-coding	8.43023286652061	8.49734277919119	8.40065156617132	8.280935644553	8.39336621664112	8.45211801417689	8.50412575703332	8.10905018227764	-0.034812184175953	0.83187182783905	0.935652057925475
Merged-chr10-8362301-4	chr10	8362205	8362405	+	912.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 2 of 7)	intron (NM_177387, intron 2 of 7)	156520.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	4.62541062563152	5.52001057349614	5.12682065044596	3.96307431506386	5.37924955106885	5.36367525877936	5.2504097319333	4.91571918861938	0.555156298548065	0.220581354709663	0.528520559022423
Merged-chr18-60848228-3	chr18	60848150	60848350	+	605.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011552, intron 1 of 24)	B1_Mus1|SINE|Alu	714.0	NM_011552	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	3.29264547654611	2.96563110518561	2.93715393109744	2.80564385326776	3.30321805461409	3.11408449009454	3.05587010407632	3.29115668875034	0.781331025879283	0.184246581331214	0.481566019629658
Merged-chr2-11172339-4	chr2	11172236	11172436	+	984.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008859)	promoter-TSS (NM_008859)	-46.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	5.54305837206502	5.32882879074478	5.11065482359623	5.23550487785951	5.46394116380921	5.14320157318975	4.97916910231643	5.23790944314524	-0.143333252000191	0.644412532448893	0.850224984568163
Merged-chr4-155833384-3	chr4	155833282	155833482	+	648.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025338)	TTS (NM_025338)	2113.0	NM_025338	66077.0	Mm.28999	NM_025338	ENSMUSG00000065990	Aurkaip1	0610033H09Rik|Aip|Akip|MRP-S38	aurora kinase A interacting protein 1	protein-coding	2.95086462089477	2.72201206514683	2.78945007729367	2.62081342111778	3.57344326118935	3.4732163394668	3.92351949752365	3.78694785830766	3.87380848715377	1.66940574012787e-09	1.02847400862958e-07
Merged-chr8-22706123-4	chr8	22706021	22706221	+	908.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010546, exon 2 of 21)	exon (NM_010546, exon 2 of 21)	462.0	NM_010546	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	4.3337439461251	4.42243955369791	4.13296987142194	4.21871533577685	4.85211244517229	4.75903123403014	4.56645556313053	4.54622582148745	0.936483796111992	0.0104323223528529	0.0814213018370303
Merged-chr12-85142989-3	chr12	85142888	85143088	+	780.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146244, intron 4 of 10)	intron (NM_146244, intron 4 of 10)	8276.0	NM_146244	238323.0	Mm.44829	NM_146244	ENSMUSG00000019235	Rps6kl1	A830084F09Rik|AW046440	ribosomal protein S6 kinase-like 1	protein-coding	3.38748760397625	3.81043003465211	3.50862720561354	3.4404533862559	3.77887683370929	3.62439626205743	3.7051905530791	3.61717288270862	0.44690769006162	0.359133297861018	0.665073082746628
Merged-chr10-63177447-4	chr10	63177341	63177541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182992, intron 2 of 19)	intron (NM_182992, intron 2 of 19)	26511.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	5.80040596135589	5.66080779225691	5.75115363673814	5.95496036425718	6.08027296286023	5.84907663041176	6.14968574886459	5.98034978373441	0.341892814900852	0.170495753377864	0.463684279922871
Merged-chr2-11218318-4	chr2	11218216	11218416	+	644.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	45934.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	3.67996255226964	3.6349101088189	3.7320474222716	3.58602535991324	3.81073192246321	3.62747702584148	3.76561801750475	3.72990184333548	0.266270066396296	0.559899725379314	0.804106019788834
Merged-chr11-20068577-2	chr11	20068494	20068694	+	700.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_146243, intron 8 of 8)	intron (NM_146243, intron 8 of 8)	44357.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	3.32800079561358	3.05945364176909	3.10788044849619	3.47471196098106	3.19882288912581	2.87112316889261	3.09703717503717	3.04484035264525	-0.777346242926763	0.198487102339161	0.500021711463428
Merged-chr13-83524334-3	chr13	83524212	83524412	+	952.638855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347568)	promoter-TSS (NM_001347568)	-431.0	NM_001347567	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	3.93685529840365	3.95485046177762	3.74766030460362	4.16869325185284	3.34636495859982	3.4448219671931	3.68051428772821	3.46131641692061	-1.5496305515539	0.00214180115833991	0.0246684894254816
Merged-chr8-126921039-4	chr8	126920930	126921130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24891.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	6.31461804080522	6.61107415792412	5.78981662767793	5.74694723808877	6.42879542203098	6.25679594881627	6.45003411696116	6.09681541212198	0.238821644122021	0.409847209207434	0.70525942551561
Merged-chr8-83899917-6	chr8	83899837	83900037	+	955.5238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181039)	promoter-TSS (NM_181039)	-161.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	3.96084192466545	4.15440949712866	4.69304252486115	4.17527386377348	4.20954809002602	4.1395099467801	4.14594763889025	4.11381263974076	-0.285210330350339	0.506906069047207	0.772597312449651
Merged-chr10-118869233-5	chr10	118869181	118869381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014390)	promoter-TSS (NM_001014390)	-378.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	7.66699281362754	7.91818148537129	7.5710922809488	7.55661869471467	7.83755342401568	7.93585924725101	7.95062941912124	7.78444571031017	0.25303831546608	0.14835212638689	0.430071295027352
Merged-chr13-92610056-4	chr13	92609888	92610088	+	822.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1150.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	3.47018881346439	3.43221964531756	3.5225518015809	3.60786115859359	3.1840230962806	3.14396064809212	3.40337289095883	3.46872104090589	-0.746038904011151	0.159618912184325	0.447290863941044
Merged-chr2-45100866-4	chr2	45100772	45100972	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	9405.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	5.18887460606059	5.45373651822822	4.57359695592787	4.77664889369717	5.27627130234921	5.16701126492709	5.00222905486	5.24587722058418	0.264965066918009	0.458729703414498	0.741499297362111
Merged-chr9-106453624-4	chr9	106453507	106453707	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021567)	promoter-TSS (NM_021567)	-231.0	NM_021567	59092.0	Mm.286394	NM_021567	ENSMUSG00000023495	Pcbp4	1200003L19Rik|AlphaCP-4	poly(rC) binding protein 4	protein-coding	4.18429713979621	3.65360997745368	4.48670090020798	4.0114014593949	3.79476221022976	3.91022443573783	3.98442701079655	4.13890362947767	-0.402961316025721	0.395317493511168	0.694193627434107
Merged-chr12-55492739-4	chr12	55492625	55492825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010907)	promoter-TSS (NM_010907)	-78.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	9.02372305769519	9.18219673730563	9.25416099400112	8.82299954624199	8.93254935937662	9.04928860239185	8.85847973575602	8.57770893581955	-0.262300772424753	0.133698193277594	0.407088321825123
Merged-chr15-102279500-4	chr15	102279431	102279631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134100)	promoter-TSS (NM_134100)	75.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	7.21769598245646	7.18173740208277	7.01239890837901	6.98856042447488	6.83151493396845	6.86483243542894	7.03765362015756	7.1817667357736	-0.160224001837871	0.419394456885987	0.712515966395674
Merged-chr17-27925769-4	chr17	27925678	27925878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	16472.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	5.65875875986113	5.51029304629984	5.75893096697056	6.00618201988606	5.59664644827687	5.64213745500307	5.3450901362347	5.93222106745477	-0.194805492813433	0.500572306454592	0.768850577358824
Merged-chr1-87659423-4	chr1	87659313	87659513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	39101.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	7.38981009265141	7.45908608732667	7.1059322298209	7.0812555308766	7.0676328637264	6.81625933014827	7.09360268818717	7.22499770312754	-0.277226208212	0.176297796151436	0.471307205534908
Merged-chr2-11553063-4	chr2	11552948	11553148	+	952.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	881.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	4.64835569260964	4.7818972137165	5.23869749538421	4.71036685965296	4.72999479778506	4.78348028649285	4.62774592444178	4.87444663344246	-0.208042937568995	0.557129289572186	0.802394360861461
Merged-chr19-3882464-4	chr19	3882344	3882544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 3 of 11)	intron (NM_001271496, intron 3 of 11)	22786.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	5.42419274030034	5.68356849163249	5.53782373244125	5.46290469582264	5.9002508108306	5.34399533129287	5.39814187581953	5.42135351976742	0.04535950076632	0.87757296760011	0.954199567096042
Merged-chr2-98663861-4	chr2	98663743	98663943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	1196186.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	6.92034823010685	6.4045588219045	7.39081791870705	7.96007575755564	6.11070847326294	6.46087451754078	6.26739433545151	6.99187818312781	-1.10192765650012	0.0338633404353404	0.181557600847175
Merged-chr9-16237841-2	chr9	16237741	16237941	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	140390.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	2.89234806626929	2.75257555108013	3.02048524633394	3.20511328105652	3.02613823000935	3.19000053388031	3.17816753451802	3.01899188963581	0.454912464924488	0.457856696108055	0.740862073979297
Merged-chr7-141562822-2	chr7	141562722	141562922	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 1 of 21)	intron (NM_001357068, intron 1 of 21)	642.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	3.09853918103635	2.65791073695703	2.57622969934775	3.06057342155305	2.83644555145839	2.97139728419529	2.97509334415005	3.14977750507061	0.476697131216262	0.484340890637804	0.75849028105932
Merged-chr14-68695972-3	chr14	68695884	68696084	+	926.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40142.0	NM_183366	13522.0	Mm.117450	NM_010082	ENSMUSG00000014725	Adam28	C130072N01Rik|D430033C21Rik|Dtgn1|MDC-L|MDCL|TECADAM|eMDCII	a disintegrin and metallopeptidase domain 28	protein-coding	4.31339108864424	3.96599002191502	4.71329337609736	3.97531255273556	4.10272804160748	4.25807057598167	4.4894864843632	3.97214461113761	-0.124633212807559	0.785353627463107	0.916479414030825
Merged-chr4-21847577-4	chr4	21847479	21847679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025669)	promoter-TSS (NM_025669)	-4.0	NM_025669	66625.0	Mm.100117	NM_025669	ENSMUSG00000028248	Pnisr	5730406M06Rik|AA673174|Pinsr|Sfrs18|Srsf18	PNN interacting serine/arginine-rich	protein-coding	6.21969490993989	5.94341482494668	5.84148144584776	6.0371953356829	6.35855364901241	6.35752278340276	6.62202089544127	6.27285886494023	0.592382444381965	0.0114708936264097	0.0869991195987443
Merged-chr7-25283822-4	chr7	25283723	25283923	+	974.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027882, intron 1 of 19)	intron (NM_027882, intron 1 of 19)	1644.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	5.17738748738333	5.12906815017728	5.20914181250423	5.21300574924356	4.93440970907653	4.87203791830292	5.57001828422891	4.8967921932832	-0.152820923391618	0.647242453669272	0.851605116430591
Merged-chr7-97171894-4	chr7	97171806	97172006	+	965.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	90155.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	4.81155602997828	5.14575190256161	4.852883276048	5.36620827083809	5.21678923678355	5.37277476128198	4.90704838752746	5.19720649379108	0.180041629903755	0.594430768529321	0.823411261518897
Merged-chr15-43487487-2	chr15	43487387	43487587	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025736, intron 1 of 10)	RLTR13B1|LTR|ERVK	10258.0	NM_025736	66736.0	Mm.244512	NM_025736	ENSMUSG00000022337	Emc2	4921531G14Rik|AV060620|AW209495|Ttc35	ER membrane protein complex subunit 2	protein-coding	3.29540542508936	3.53523086674625	3.2958353044246	3.08693531546207	3.15683893695629	3.07433744489639	3.59128151265005	3.50995145016652	0.148450039250578	0.795418385708122	0.920887514456799
Merged-chr2-165388217-4	chr2	165388062	165388262	+	937.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178411)	promoter-TSS (NM_178411)	97.0	NM_178411	228876.0	Mm.26316	NM_178411	ENSMUSG00000017667	Zfp334	D2Ertd535e	zinc finger protein 334	protein-coding	3.51477616827129	3.5381040796372	4.22495962361945	3.32511719540461	3.51992443439199	3.57294756200213	3.50177111665954	3.77993799658982	-0.292452530121111	0.595224322249051	0.823817850531136
Merged-chr10-19591897-4	chr10	19591799	19591999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010511)	promoter-TSS (NM_010511)	-50.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	8.96998338471686	9.08626895044093	8.89791957901604	8.76898636100186	8.90359378211217	9.02966414012341	8.97338554794447	8.5995977637979	-0.057776066729534	0.725833538414805	0.890921883682774
Merged-chr16-32064126-4	chr16	32064047	32064247	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177326, intron 1 of 14)	LTR16E2|LTR|ERVL	15195.0	NM_177326	224105.0	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 (RAC1) activated kinase 2	protein-coding	5.82155094381294	4.89246488275606	5.15735872554364	5.276735781468	5.46466015241861	4.99515257106615	5.25924978217786	5.39818576762624	-0.054020360175549	0.87605206892922	0.953397811847021
Merged-chr8-71668272-4	chr8	71668164	71668364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 1 of 41)	intron (NM_001029873, intron 1 of 41)	3493.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	6.74699403214232	6.92902530668374	6.52521035980271	6.60763348650028	6.59080241452966	6.7704880857371	7.24908799583786	6.86824106922672	0.25236665575106	0.279925267659534	0.591994778721935
Merged-chr7-80846940-4	chr7	80846834	80847034	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31C_MM|LTR|ERVK	-15174.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	4.68217594708538	4.67809930694122	4.32227523390411	4.38115902567779	5.1518093926034	4.89507408285178	4.77291179877779	4.82827565294672	0.866031239864885	0.0137082811929481	0.0985299148775979
Merged-chr2-39003962-2	chr2	39003862	39004062	+	823.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025592, intron 3 of 3)	intron (NM_025592, intron 3 of 3)	1169.0	NM_025592	66489.0	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	2.88867652184666	2.73437851045798	2.8286008392056	2.73435533742103	2.74479384050494	2.99833086301774	2.47174526830316	2.94512909153552	0.0397004307762008	0.952546253903387	0.983140331282832
Merged-chr3-84129376-4	chr3	84129331	84129531	+	849.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029797, intron 4 of 7)	intron (NM_029797, intron 4 of 7)	26355.0	NM_029797	76915.0	Mm.274829	NM_029797	ENSMUSG00000033752	Mnd1	2610034E18Rik|AI591601|Gaj	meiotic nuclear divisions 1	protein-coding	4.0142767451616	4.15384446443743	4.49157581675321	4.66465773778875	3.9849251880816	3.9696609713149	4.19081669601418	4.11331869989445	-0.770677050709576	0.0782774972521706	0.302744728152154
Merged-chr7-79821672-4	chr7	79821578	79821778	+	951.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008486)	TTS (NM_008486)	10951.0	NM_008589	17293.0	Mm.31472	NM_008589	ENSMUSG00000030543	Mesp2	bHLHc6	mesoderm posterior 2	protein-coding	4.19179413436932	4.02934705328175	4.65313791257434	4.56435615643362	4.54712912271583	4.15808634471654	4.79317321590287	4.28675547221315	0.188035111310384	0.662188706182473	0.859904218294241
Merged-chr3-84655060-2	chr3	84654960	84655160	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-11132.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	3.40963048946971	2.75068398375444	3.31263070915056	2.84970878609451	2.81254311339272	3.20542336544376	3.01889255241493	3.02844924139451	-0.34187818162479	0.600584812093761	0.82685105394522
Merged-chr1-179232187-4	chr1	179232076	179232276	+	688.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 5 of 11)	intron (NM_027188, intron 5 of 11)	285865.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	3.53094526145741	3.56400245526581	3.40491667595166	3.75752252633239	3.85511035238261	3.92338324787991	3.78695251283185	3.98281784530183	0.887560599365902	0.0638049269095032	0.268263887171881
Merged-chr10-15215005-3	chr10	15214905	15215105	+	999.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	454716.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	4.02837011494714	4.54027840432659	4.4035128769383	4.60854567494712	3.49295703798354	3.69519159539499	3.49225672553733	3.63700235917019	-2.51650272650379	5.78753885609748e-07	2.11473936467229e-05
Merged-chr16-33954935-4	chr16	33954829	33955029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009471, exon 6 of 6)	3' UTR (NM_009471, exon 6 of 6)	12109.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	5.83446158564064	6.10468891831534	6.36047812206073	6.19903183125188	6.21910105243505	5.85486960291216	6.05363916514435	5.80608852294152	-0.21217944795146	0.410330219529127	0.70575330310902
Merged-chr14-25472706-4	chr14	25472624	25472824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	13539.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	6.42161892904759	6.57398297466026	6.03611992580576	6.45957874607004	6.60709887526697	6.63323254145069	6.45782530622073	6.56674091570042	0.251499477528339	0.264678164552318	0.576566406596513
Merged-chr10-84147531-4	chr10	84147443	84147643	+	949.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46846.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	4.85659853177857	4.6743477932737	4.38629865604959	5.00237033113527	4.64304212287913	5.19562230736068	4.869153727956	4.99005790492584	0.334891176311711	0.366400270056996	0.670851034632856
Merged-chr5-92328173-3	chr5	92328067	92328267	+	946.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008599)	promoter-TSS (NM_008599)	-88.0	NM_008599	17329.0	Mm.766	NM_008599	ENSMUSG00000029417	Cxcl9	BB139920|CMK|Mig|MuMIG|Scyb9|crg-10	chemokine (C-X-C motif) ligand 9	protein-coding	3.78401198023711	3.8192231074884	3.41020788522415	3.41691856034328	4.54331206738054	4.3304771245185	3.71374895123305	3.78235386720964	1.46409636537023	0.0045406297467665	0.044213062208631
Merged-chr13-78043430-4	chr13	78043323	78043523	+	808.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163420, intron 8 of 8)	intron (NM_001163420, intron 8 of 8)	18521.0	NM_029315	75507.0	Mm.443255	NM_029315	ENSMUSG00000093668	Pou5f2	1700013G10Rik|SPRM-1|Sprm1	POU domain class 5, transcription factor 2	protein-coding	4.04558268689994	3.79838168639918	4.26842534231735	4.19017701882018	4.12323458268495	4.01354257915401	4.32683455686764	3.94300537497086	0.0516270768608137	0.904840347698125	0.964691960037782
Merged-chr5-149235268-4	chr5	149235159	149235359	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-29745.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	5.43943445786326	4.94269166222482	5.44037645491365	6.07434488251538	5.11014279388023	4.87086856712222	5.78543880750285	5.25957141859421	-0.45615432045629	0.253409420949146	0.564721751011949
Merged-chr5-134678242-4	chr5	134678123	134678323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305875)	promoter-TSS (NM_001305875)	25.0	NM_001305875	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	6.76403119792127	6.52358648171399	6.77888916819543	6.64178755763795	6.49792668575814	6.63022396984141	6.61586216690466	6.46662812127057	-0.179994181155422	0.384350167137371	0.685951673034199
Merged-chr14-77033516-4	chr14	77033409	77033609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172488, intron 4 of 7)	intron (NM_172488, intron 4 of 7)	3108.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	7.26697006588044	7.53900941383605	7.35298904354271	7.32838470235306	7.61700562541909	7.62843764096224	7.43331789091448	7.16048298835834	0.134963197251698	0.485212647563026	0.759170664517368
Merged-chr5-24165865-2	chr5	24165765	24165965	+	946.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153092, intron 1 of 6)	intron (NM_153092, intron 1 of 6)	902.0	NM_001346582	231042.0	Mm.45513	NM_153092	ENSMUSG00000048439	Nupl2	AV116043|CG1|NLP-1|Nlp1	nucleoporin like 2	protein-coding	2.5573869813608	3.00993151293406	2.70920215772801	2.88594996627204	2.78366140951863	3.01843962323035	3.21987718677367	2.96797918247127	0.850059955641937	0.201749520932634	0.504189633820095
Merged-chr13-92267279-2	chr13	92267179	92267379	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311120, intron 15 of 23)	Lx8|LINE|L1	-87504.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	2.97280527757995	3.01243103378598	3.10693823478849	3.3519922789477	3.2859803060405	3.28013517878332	3.37749800067878	3.43970045510125	0.772289656950946	0.17860341460889	0.474403912720026
Merged-chr2-45101985-2	chr2	45101885	45102085	+	821.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	8292.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	3.02320158199332	3.27352276512232	3.02360496825746	2.68783965423307	2.66827803527964	2.86888970635573	3.12470968828257	3.02197351492545	-0.362439291373795	0.581098499669425	0.816108482458664
Merged-chr15-59752451-4	chr15	59752349	59752549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	42510.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	5.9691290131887	6.09519214670148	5.51130847847248	6.06664742404826	5.54198481022691	5.53045946044796	6.20650076854568	6.00794218612381	-0.139323720971053	0.642359365957243	0.849120718759996
Merged-chr2-27414564-3	chr2	27414450	27414650	+	803.422241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	13058.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	3.71200700687797	4.07584694521832	4.06285023141185	4.16469414413302	3.63579551850167	3.83180943604697	3.64058734156022	4.10324791402636	-0.592952573136083	0.209540390605665	0.514046766302012
Merged-chr16-38701979-4	chr16	38701874	38702074	+	983.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	11061.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	5.1864017899764	5.12344900155599	4.89270020032216	4.82590326585877	4.91582374352764	4.95410678642614	5.29822452014397	4.50758710287094	-0.115450190310763	0.745029632192627	0.899431814827356
Merged-chr2-151536863-4	chr2	151536780	151536980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5603.0	NR_126058	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	6.83228388201808	6.59143985481466	7.48914510787055	7.04104082459022	6.85864322919186	7.3257312701532	7.07945641417262	6.96453017250138	0.0471851866207335	0.849493089000659	0.943128665229694
Merged-chr11-29787614-4	chr11	29787501	29787701	+	945.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 24 of 41)	intron (NM_146016, intron 24 of 41)	38067.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	4.08194580371619	4.43725267924573	4.45531391938089	4.51630218441084	4.51974479471874	4.26088930132723	4.35219558616687	4.49221165018982	0.050245032726501	0.89687306040389	0.961409128875898
Merged-chr16-18248877-4	chr16	18248773	18248973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011239)	promoter-TSS (NM_011239)	-10.0	NM_001357146	15547.0	Mm.271798	NM_008307	ENSMUSG00000022721	Trmt2a	Htf9c	TRM2 tRNA methyltransferase 2A	protein-coding	8.50094694094317	8.833417678818	8.63915538683951	8.48201430969297	8.6361318196897	8.73862614231504	8.75856814066311	8.38201027580331	0.0215730052955036	0.898693843845104	0.962303043708153
Merged-chr10-111771525-4	chr10	111771423	111771623	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102853.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	5.18979254499481	5.01031293786448	5.22153008398548	5.57557558463737	4.96349338826231	4.74516080483995	5.4417674366754	5.05575378070883	-0.382736420364171	0.267201996325065	0.578889139572816
Merged-chr18-24653833-4	chr18	24653744	24653944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026779, exon 1 of 15)	5' UTR (NM_026779, exon 1 of 15)	153.0	NM_026779	68591.0	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	6.77116457109655	6.66164071357827	6.80129276767254	7.10047629038808	6.68442731979962	7.04741824711949	7.27414134355573	6.95775995101257	0.202763325452577	0.374020419884819	0.677397508129094
Merged-chr6-85370862-4	chr6	85370753	85370953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003955, intron 1 of 5)	intron (NM_001003955, intron 1 of 5)	3781.0	NM_177466	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	6.1050071753181	6.1336519843376	6.48803940595034	6.79081015636884	6.0331735914519	5.80410583094592	5.96453813176811	6.48338416794187	-0.49606892582168	0.0828585696326775	0.312701201346409
Merged-chr8-104641726-4	chr8	104641641	104641841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026753)	promoter-TSS (NM_026753)	-13.0	NM_026753	68523.0	Mm.279	NM_026753	ENSMUSG00000031879	Fam96b	1110019N10Rik	family with sequence similarity 96, member B	protein-coding	6.56289445660369	6.70103319516583	6.3344733373705	6.54573405010536	6.41936742202095	6.77193142602826	6.85427356646534	6.54312800291759	0.152402226204743	0.495613094793452	0.765874409085869
Merged-chr17-12754772-4	chr17	12754667	12754867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	13456.0	NR_027784	104103.0	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	7.69268616948832	7.84851374415795	7.35193820209354	7.51350571327772	7.63725742391749	7.73463346239847	7.60704928252355	7.51555887559789	0.0153614952835281	0.934391274481598	0.976356212091203
Merged-chr12-85518408-4	chr12	85518311	85518511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44521.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	5.62849504609032	5.36389052425103	5.11232782316749	4.98108681860329	5.26901753205351	5.35774168963653	5.45181916330521	5.50188586279591	0.20771073844504	0.50558410892807	0.771488881809541
Merged-chr2-102186381-4	chr2	102186272	102186472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290784)	promoter-TSS (NM_001290784)	88.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	6.69376297581502	6.60561703222247	6.70937372894993	7.05919686318417	5.83098177252061	6.44557113802687	6.61660904436081	6.59997700329362	-0.563931547333148	0.0328642710910679	0.17787589932257
Merged-chr7-128209903-4	chr7	128209806	128210006	+	940.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3540.0	NM_009943	12862.0	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	5.49514574609341	5.73924445189365	4.78165416415483	4.33161564085245	5.29024966185072	5.36350619657945	4.99413231577646	5.15222342667225	0.00128478132621313	0.997599034884208	0.999032258328017
Merged-chr3-7503454-4	chr3	7503339	7503539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173181)	promoter-TSS (NM_173181)	13.0	NM_173181	67306.0	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	7.79315777933236	7.84478903162463	7.82598035189398	7.91314395510532	7.99663499214267	7.95615257269329	8.54842121987186	8.08597333906794	0.413706972321746	0.0293615267580792	0.164900471278355
Merged-chr5-134965589-2	chr5	134965489	134965689	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18655.0	NM_009903	12740.0	Mm.7339	NM_009903	ENSMUSG00000047501	Cldn4	Cep-r|Cpetr|Cpetr1	claudin 4	protein-coding	3.01314949070854	3.095725062325	3.07030783191157	2.87344705493158	2.99542398221545	2.78971305160369	2.81793125251597	2.95266891245081	-0.495875997968896	0.414966645949642	0.709411978793563
Merged-chr6-124319722-4	chr6	124319630	124319830	+	973.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170395, intron 10 of 16)	intron (NM_001170395, intron 10 of 16)	15079.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	4.96087740762694	5.04036179013596	5.0232121142997	4.78286612254119	4.77786212078092	4.22446558968626	4.40036377950956	4.46406622794997	-0.957058251712535	0.0111651146075587	0.0853163384488912
Merged-chr2-131222715-4	chr2	131222606	131222806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-11357.0	NM_001206383	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	5.29134487853057	5.36142664183739	5.35414806753252	5.55331095479094	5.548810485675	5.19032310263451	5.73376090797072	5.40941067721107	0.147474621124053	0.612741996443285	0.832832725096038
Merged-chr15-89075418-4	chr15	89075303	89075503	+	963.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355617)	promoter-TSS (NM_001355617)	451.0	NR_040417	69120.0	Mm.276391	NR_040417	ENSMUSG00000087331	1810021B22Rik	-	RIKEN cDNA 1810021B22 gene	ncRNA	5.12022425700445	4.88529058263169	4.5843442668023	5.0170962429674	4.58449784469094	4.96311778266718	4.68939744120156	4.85984568975577	-0.305536486737447	0.380902391044952	0.683255242866577
Merged-chr7-141268610-4	chr7	141268536	141268736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028069)	TTS (NM_028069)	-2212.0	NM_001252600	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	5.17210513289324	5.0001691008883	5.38846998778793	5.23405466532574	5.5715612420819	5.17242692903473	5.5681567137222	5.41266692905714	0.436965902583106	0.138900213494785	0.414457946133613
Merged-chr7-120102368-4	chr7	120102262	120102462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145586)	promoter-TSS (NM_145586)	-64.0	NM_145586	233806.0	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	7.44893654503629	7.3640865902468	7.38209832565054	7.67688133076479	7.27848815550871	7.32989568171332	7.61348938159741	7.19438071788532	-0.162420467332655	0.402880496129862	0.700352435745309
Merged-chr10-94054485-1	chr10	94054385	94054585	+	795.0	f0_balb.idr	intron (NM_053072, intron 2 of 20)	intron (NM_053072, intron 2 of 20)	18484.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	3.23542942562321	3.41127445182617	3.23582184724744	3.54974057246601	3.12459377599823	3.40711278089964	3.16351750827671	3.4035040303012	-0.362151609952702	0.510546511880163	0.774867939359323
Merged-chr1-24702554-3	chr1	24702519	24702719	+	925.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026719, intron 3 of 15)	intron (NM_026719, intron 3 of 15)	23701.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	3.29472272090746	3.24755234498012	3.85369457912816	3.76378368711342	3.45988605467197	3.47102832027786	3.34526289409228	3.41466116234846	-0.49745496005275	0.364517293657705	0.669279814395716
Merged-chr16-14362869-4	chr16	14362813	14363013	+	863.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008576, intron 1 of 30)	intron (NM_008576, intron 1 of 30)	1355.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	4.27175023241727	3.97519189220992	4.04259388269608	4.00059358663936	4.18711335161399	4.43964150488966	4.37142547778641	3.98938074287418	0.47224289187311	0.251871660671305	0.563082161340582
Merged-chr6-8337086-3	chr6	8337004	8337204	+	739.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302354, intron 2 of 3)	intron (NM_001302354, intron 2 of 3)	77816.0	NM_001302353	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	2.81259017123877	2.6740510190643	2.94175872332987	2.95873665624768	2.88615228298981	3.05066525075089	3.04680280786082	3.11200506848162	0.704285549858254	0.246604954720257	0.557837855749496
Merged-chr3-107931828-4	chr3	107931730	107931930	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026672)	promoter-TSS (NM_026672)	-13.0	NM_026672	68312.0	Mm.458189	NM_026672	ENSMUSG00000004035	Gstm7	0610005A07Rik|AI894236|Cd203c	glutathione S-transferase, mu 7	protein-coding	5.03857599347162	5.21342666448543	5.46882836371735	5.62381016673685	5.04349769427574	5.06496245128367	5.51626778969219	5.07194209468122	-0.334434491814149	0.307500117218571	0.61981567251439
Merged-chr19-38010631-3	chr19	38010548	38010748	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 3 of 53)	intron (NM_001302140, intron 3 of 53)	32929.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	5.42635642977325	5.01354951818246	5.6952851416949	6.05866077772824	4.23129975650058	4.20043111671441	4.29372568746774	4.52226017131392	-2.70590739859392	5.43641238329248e-11	4.33809862141676e-09
Merged-chr17-47609384-4	chr17	47609277	47609477	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016859, intron 1 of 6)	L2|LINE|L2	2115.0	NM_016859	53414.0	Mm.472101	NM_016859	ENSMUSG00000023988	Bysl	Bys|Enp1	bystin-like	protein-coding	4.63826953318985	4.56862230448851	4.13021998033546	4.49443587027961	4.63364703456174	4.3138800963601	4.97666322878722	4.78026805648629	0.489854630213901	0.208253780573016	0.512473495156671
Merged-chr9-118763029-4	chr9	118762984	118763184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	51392.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.65494147594246	5.67939812133934	5.98238737698328	5.72851523882592	5.41461960715011	5.12693006294107	5.38256269510547	5.464696677595	-0.695701465399099	0.0124185275535599	0.0920099954640439
Merged-chr11-60211032-3	chr11	60210942	60211142	+	928.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358314)	promoter-TSS (NM_001358314)	-571.0	NM_001358314	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	3.51908819636149	3.66983139258739	3.63018503137922	3.7786672644767	3.43044795800971	3.85100645414713	3.38727974482821	3.72984987902313	-0.164631196548548	0.742310638606118	0.898494026733066
Merged-chr1-10039744-4	chr1	10039638	10039838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026493, intron 1 of 29)	GC_rich|Low_complexity|Low_complexity	1520.0	NM_026493	211660.0	Mm.244046	NM_026493	ENSMUSG00000056763	Cspp1	2310020J12Rik|4930413O22Rik|AA387550|BC055915|Cspp2|Cspp3	centrosome and spindle pole associated protein 1	protein-coding	7.46940093557537	7.29664353490637	7.25765641829963	7.27844409237616	7.44581518822792	7.53054703621018	7.662459825794	7.39848715252074	0.249576328063442	0.160023259039471	0.447864280018072
Merged-chr3-130715266-6	chr3	130715104	130715304	+	935.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5760.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	3.96016391587696	3.71380442169934	4.38977060412661	3.87220315241662	3.97029175238613	4.13500968941676	4.08707249656773	4.14750184663758	0.224400348415486	0.615511469503463	0.834477192020031
Merged-chr11-106200957-2	chr11	106200857	106201057	+	753.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_026009, exon 13 of 13)	exon (NM_026009, exon 13 of 13)	-7354.0	NM_001252449	72149.0	Mm.403722	NM_028126	ENSMUSG00000069631	Strada	2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik	STE20-related kinase adaptor alpha	protein-coding	3.26523233545297	2.76855868061017	2.97739683364872	2.97349199586212	3.16731254566109	3.27020255378867	3.02955894208075	3.03890284452562	0.506361917936714	0.392968389687313	0.692233944849983
Merged-chr11-95842274-4	chr11	95842215	95842415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284397)	promoter-TSS (NM_001284397)	20.0	NM_001284393	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	6.46335604742878	6.66936032914325	6.34532020575823	6.31798417909474	6.31430162220837	6.24411931914292	6.1417460765417	5.87062681358282	-0.439450781678091	0.0669806273660972	0.276031384627804
Merged-chr6-94159443-4	chr6	94159323	94159523	+	929.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	78019.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	6.0997358573579	6.75413875291107	6.2134385288918	6.9711344734461	5.20135918527972	5.18769811343396	5.05565351668273	5.07720848558869	-2.37046313201199	5.2311546053055e-14	7.21605336533024e-12
Merged-chr1-97661844-8	chr1	97661666	97661866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355072)	promoter-TSS (NM_001355072)	-90.0	NM_001355072	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	5.57850275869946	5.78428608265202	5.85043092469183	5.82878934468912	5.54449648041037	5.61172585940287	5.3122206114535	5.93179807586956	-0.255243735172121	0.357910879681627	0.663984010239223
Merged-chr6-92940337-1	chr6	92940237	92940437	+	669.0	f0_balb.idr	promoter-TSS (NR_015530)	promoter-TSS (NR_015530)	-245.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	2.31377412139647	2.28332711015632	2.37424401676646	2.5368683264858	1.93467082238132	1.9765634511305	1.95915793079678	2.03998006618976	-3.87640539293343	0.000600960286348662	0.00895077468550145
Merged-chr15-99875495-4	chr15	99875386	99875586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113545)	promoter-TSS (NM_001113545)	-30.0	NM_001113545	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	7.06627211074639	7.0437974748415	6.31661235029849	6.58304661361271	6.75013727707412	6.86437390955188	6.92616832292696	6.71292731652125	0.0403871312269751	0.867370822198108	0.950313421774078
Merged-chr8-14815262-4	chr8	14815146	14815346	+	920.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 9 of 15)	intron (NM_172910, intron 9 of 15)	-73290.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.8900501264315	3.80705272145219	4.46313670802576	4.7353382423499	4.27155955505484	4.01456048824482	4.44196251637412	4.53483076178526	0.0792224608656954	0.872586894713412	0.952196335604433
Merged-chr14-75064801-4	chr14	75064706	75064906	+	812.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	48779.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	3.29785584682244	3.378373473325	3.49782269416586	3.39385875245169	3.96955015149787	4.2139864525752	3.9012815361842	3.82374822543542	1.78266890423759	0.000189246619913152	0.00347353923641007
Merged-chr4-8843505-2	chr4	8843405	8843605	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 18 of 36)	intron (NM_001355382, intron 18 of 36)	92181.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	3.12151409891018	3.02000520557309	3.23882374069811	3.05708372793999	3.12038769540585	3.10288195014819	3.28004482827837	3.39422436235974	0.466325564118157	0.397212879956185	0.695630734730866
Merged-chr5-107866603-4	chr5	107866512	107866712	+	964.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 1 of 17)	HAL1|LINE|L1	8495.0	NM_007964	14020.0	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	5.24881317802151	5.19212868360109	5.08772209633057	5.78127640096155	5.26034031458026	4.82372503289101	5.22370658527036	5.04930627332742	-0.500135540234255	0.145974444679085	0.425870917490536
Merged-chr8-106210076-3	chr8	106210002	106210202	+	699.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145404)	promoter-TSS (NM_145404)	831.0	NM_001007567	66432.0	Mm.269029	NM_001007567	ENSMUSG00000033106	Slc7a6os	2010007L18Rik|2400002F02Rik	solute carrier family 7, member 6 opposite strand	protein-coding	3.63818497445289	3.30255278013136	3.58473658826036	3.78537093918568	3.81957327570441	3.80845310193743	3.57088509652931	3.58279976217996	0.317636564451039	0.526652136493708	0.783877136537277
Merged-chr16-17234746-3	chr16	17234651	17234851	+	934.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178922, intron 1 of 2)	intron (NM_178922, intron 1 of 2)	1164.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	3.60776802465008	3.27552919677788	3.32417540687159	3.53469244881276	3.72068492543949	3.72552883347358	3.37413008498686	3.60619010083819	0.545526670664957	0.283856724423358	0.595921842610015
Merged-chr4-132010624-4	chr4	132010531	132010731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	38447.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	5.54855186380774	5.54573528524827	5.29733107957517	5.55065394110994	5.07472734291401	5.20107393323941	5.41633250209039	5.35416543563801	-0.420575937446236	0.144527537245137	0.423678002288688
Merged-chr18-53160375-4	chr18	53160279	53160479	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15913.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	4.25451968798148	4.62546538562235	4.87758254324501	4.37563983445785	4.67426006974269	4.22279663497935	4.50451915758224	4.52249520946287	-0.107882312213897	0.785987360487972	0.91674986342205
Merged-chr1-180901263-4	chr1	180901162	180901362	+	808.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3012.0	NM_133705	69051.0	Mm.274180	NM_133705	ENSMUSG00000026520	Pycr2	1810018M05Rik|P5cr2	pyrroline-5-carboxylate reductase family, member 2	protein-coding	3.65730002033126	3.66468588247777	3.54201009870945	3.65992652469271	3.88893505611073	4.1199947706662	3.58763187120087	3.81199091809354	0.678544496375915	0.146004882253499	0.425889079187705
Merged-chr15-31472989-4	chr15	31472868	31473068	+	947.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 20 of 25)	PB1D7|SINE|Alu	-19279.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	3.80725406287953	4.13299439150691	3.96934616440797	3.93108519767092	3.9257066642262	4.19128309037913	4.13893462674055	4.27971599779953	0.443548853752666	0.294247280797833	0.606535224072776
Merged-chr2-102360749-3	chr2	102360650	102360850	+	868.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020267, intron 2 of 4)	intron (NM_020267, intron 2 of 4)	40150.0	NM_020267	80985.0	Mm.315002	NM_020267	ENSMUSG00000027189	Trim44	Dipb|Mc7	tripartite motif-containing 44	protein-coding	3.6500165563283	3.75522027470901	4.08994695631489	4.22948034297527	3.40388221728333	3.51250804123932	3.74659165589779	4.12778881821504	-0.668388225447275	0.209860366511614	0.514399635935472
Merged-chr4-95200645-4	chr4	95200541	95200741	+	852.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148419.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	3.80527520829114	3.40203153935581	4.21269395800814	3.93381039261795	3.85169742835618	3.7549153020433	4.07221910239067	4.00038630068763	0.15276248314032	0.757535200168381	0.90479159536558
Merged-chr11-120784232-4	chr11	120784123	120784323	+	961.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009053)	promoter-TSS (NM_009053)	-19.0	NM_009053	19719.0	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	5.15598102149223	4.91885836899933	4.5741626094239	4.70709552518968	5.02017429085317	5.23704111693795	4.83883081763801	4.78293131106053	0.263182684781229	0.449154291750495	0.73430918582637
Merged-chr5-66005019-4	chr5	66004909	66005109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027961)	promoter-TSS (NR_027961)	-724.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	5.7324198053737	5.94706232187767	6.12091962182479	5.94407169317607	5.7818275124817	5.63148435475138	5.80079390653066	5.41700634523187	-0.440843445027972	0.0941067505881892	0.335575592411038
Merged-chr11-54802428-4	chr11	54802315	54802515	+	984.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14712.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	5.30095879614188	5.05498019232108	4.589898096618	5.00071375569843	4.92492740886644	5.29877349314009	5.16200977713214	4.84424122387466	0.104103232898499	0.762269455627421	0.906862403177406
Merged-chr6-87509280-4	chr6	87509189	87509389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	L1M4c|LINE|L1	-12962.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	5.93290711384497	5.89601101683727	6.41823218847863	6.52392346473058	6.08006298519609	6.06335082846891	5.99431203924596	6.06395181031478	-0.288339189267036	0.277093026567364	0.589231030012614
Merged-chr18-77065066-4	chr18	77064985	77065185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164167)	promoter-TSS (NM_001164167)	-123.0	NM_008602	17344.0	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	6.71738617144377	6.45587998863634	6.84367816665265	6.41185395607189	6.62971185055667	6.93761807079175	6.92214664915275	6.6071027074695	0.246805622764836	0.272391486017223	0.583838924250549
Merged-chr3-82999237-2	chr3	82999142	82999342	+	629.333374	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-8482.0	NM_133862	99571.0	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	3.29178497624563	3.61264454934225	3.48747085477454	3.77705626850043	3.63630352668327	3.97648279813249	3.58951963946609	3.94077334358878	0.677787079361575	0.189173454361321	0.488066531391588
Merged-chr10-91080740-4	chr10	91080641	91080841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042558, intron 1 of 26)	intron (NM_001042558, intron 1 of 26)	2002.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	5.01759319090815	5.56706030287749	5.22668047252912	4.978658477894	5.79830389502987	5.46389021315597	5.3785415778978	4.89717930191383	0.392663223921442	0.261565408770455	0.573495694642442
Merged-chr19-46041915-3	chr19	46041857	46042057	+	867.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113408, intron 1 of 10)	intron (NM_001113408, intron 1 of 10)	-2336.0	NM_010697	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	3.00684460374741	3.05900871654764	3.18048753817193	2.82120789926469	2.91120176154132	3.17891902813019	2.86859190193551	3.12353915365832	0.0369212400702757	0.950819854012269	0.982441156496622
Merged-chr14-50824316-4	chr14	50824173	50824373	+	979.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009351, exon 55 of 55)	exon (NM_009351, exon 55 of 55)	16357.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	4.43223015708221	4.57848908230485	4.59828823753577	4.79293660307278	6.05945176445547	5.71720376743199	5.94234494508606	6.1081055888439	2.37578300741699	5.26169603274736e-13	5.9447978081734e-11
Merged-chr15-84183545-4	chr15	84183441	84183641	+	955.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054088, intron 7 of 7)	intron (NM_054088, intron 7 of 7)	-8692.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	5.09801591159068	4.67756460804998	4.55933561190935	4.80629688011826	5.22260815765227	5.3315871297852	4.79557270178111	5.24343418211073	0.709379260619027	0.0371751116755625	0.192330809271323
Merged-chr8-84737819-4	chr8	84737735	84737935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	36378.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	6.79683597717803	6.98057391522291	6.9595635561795	7.03627775243245	6.74947281074255	6.93111722812069	6.91173980229171	6.84936131244705	-0.135775659247545	0.483945281835064	0.758171000038253
Merged-chr17-21515881-4	chr17	21515793	21515993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19646.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	5.49877974054518	5.31960108662186	5.6791713028814	5.46598203478229	5.5512038311609	5.61796380067821	5.52570359929911	5.31900415041413	0.0307569169052597	0.911232641827198	0.966928967525129
Merged-chr6-125030677-4	chr6	125030526	125030726	+	919.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130997, intron 1 of 3)	intron (NR_130997, intron 1 of 3)	-9222.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	3.48558356582973	3.36072325666867	3.24156422631166	3.33591211061103	3.86050118607819	3.71082296969825	3.3573683424484	3.64125687264087	0.993681629738231	0.0499440569285693	0.231594008346491
Merged-chr7-16842841-4	chr7	16842755	16842955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252458)	promoter-TSS (NM_001252458)	-47.0	NM_001252458	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	6.7863875592112	6.99306098784978	6.85676954766228	6.76310037189475	6.63766012129007	6.84515896209956	6.98491636286977	6.69455057821266	-0.0816688941866926	0.690074955058289	0.873711152914966
Merged-chr2-104693438-5	chr2	104693260	104693460	+	853.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177190, intron 5 of 9)	intron (NM_177190, intron 5 of 9)	18802.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	3.57775915320595	2.96042811175141	3.17078187054224	3.31776968490677	3.02957759418478	3.39941647595321	3.21812084138091	3.16922183586367	-0.263027965095603	0.655289324157065	0.856004676249807
Merged-chr11-77801437-4	chr11	77801335	77801535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291214, intron 1 of 38)	intron (NM_001291214, intron 1 of 38)	137.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	6.41937053647636	6.67043921325396	6.65399253989814	6.48162103950083	6.39124129452219	6.17647332037252	5.96705835800713	6.12905298824334	-0.554455440731369	0.0167500952623816	0.113418477043479
Merged-chr6-83506967-4	chr6	83506847	83507047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162521)	promoter-TSS (NM_001162521)	22.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	8.58585605855136	8.75993707309589	8.30288138459805	8.52242764081567	8.60812848725926	8.78353262065152	8.6195134744034	8.36522616540214	0.0601985460195857	0.728093891076332	0.891779294267982
Merged-chr10-89599507-4	chr10	89599435	89599635	+	967.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182959, intron 3 of 11)	intron (NM_182959, intron 3 of 11)	280.0	NM_001310710	216227.0	Mm.233921	NM_182959	ENSMUSG00000019935	Slc17a8	BC042593|Vglut3	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8	protein-coding	4.84975858698505	4.66929099964001	5.21632225343684	4.20454840272505	5.12206356169133	5.47122320403655	4.93675673736977	5.18342379434851	0.819349899402203	0.0346567899128701	0.184298516937481
Merged-chr2-129594883-4	chr2	129594915	129595115	+	969.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355160)	promoter-TSS (NM_001355160)	-447.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	4.32431548178908	4.55556862256085	4.32496054210401	4.43270975470681	4.80954279258143	4.63669543280002	4.30629541704074	4.9554870825654	0.629761519754808	0.095353783820749	0.337948786233754
Merged-chr4-109760746-2	chr4	109760646	109760846	+	856.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007983, intron 7 of 18)	intron (NM_007983, intron 7 of 18)	84119.0	NM_007983	14084.0	Mm.318259	NM_007983	ENSMUSG00000010517	Faf1	AA408698|Dffrx|Fam	Fas-associated factor 1	protein-coding	3.03153518581735	3.056801157783	3.15925505910244	3.00656304285664	3.1869265767078	3.49669446239078	3.26335016920435	3.52416275006841	1.19456209882279	0.0285263583298488	0.162062228394948
Merged-chr18-70613581-3	chr18	70613484	70613684	+	678.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010773, intron 3 of 6)	intron (NM_010773, intron 3 of 6)	45292.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	3.64278576794337	3.30055833735225	3.74652056528791	3.42415245733451	3.72987441328622	3.58848035554207	4.0710408104461	3.64122504517428	0.74245115802998	0.137664648933127	0.412732369272771
Merged-chr18-35477973-3	chr18	35477866	35478066	+	621.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030749, intron 1 of 9)	RMER4B|LTR|ERVK	-8014.0	NM_001360814	81500.0	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding	3.2141959087925	3.23667989322495	3.15734876040188	3.12503467708652	2.79964151158139	3.07797221168594	3.20195507188188	3.26759013504094	-0.352776632778694	0.547514803710194	0.796913059286089
Merged-chr11-117198260-4	chr11	117198177	117198377	+	949.6979369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1384.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	4.62500067753102	4.89552549927412	4.49443372881474	4.69887385021614	5.1949638586966	4.71647205390637	4.75962666944549	4.66369355387099	0.36505237550416	0.311659257347607	0.623665218229603
Merged-chr5-121249858-4	chr5	121249745	121249945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 1 of 75)	intron (NM_181421, intron 1 of 75)	29626.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	5.094234610123	4.96460373520306	5.47104813873609	5.44624982861193	5.35730208640663	5.27369117723722	5.66491974927728	5.71244918675496	0.424004478448802	0.175232812369272	0.469912833953675
Merged-chr7-137609955-3	chr7	137609856	137610056	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	172282.0	NR_033611	620016.0	Mm.388932	NR_033611	ENSMUSG00000100863	Gm12669	-	glutaredoxin 3 pseudogene	pseudo	4.68861696343077	5.40545556920273	4.79696362671231	5.20920075635175	3.75826454912377	3.81250518888628	4.0076622573381	4.44027811993345	-2.45398698320518	1.30661667978532e-07	5.46758781013753e-06
Merged-chr7-142396760-4	chr7	142396681	142396881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8911.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	5.34819548219175	5.58553790435243	5.73031927610039	5.16074762503518	5.71507855051354	5.75516276922726	5.35374971516225	5.81678897987265	0.366073285549449	0.217543377307032	0.524490060405014
Merged-chr13-65279242-2	chr13	65279142	65279342	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178364, intron 1 of 7)	intron (NM_178364, intron 1 of 7)	388.0	NM_178364	170936.0	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	3.78492389699166	3.59582596474633	4.15337244453661	3.74116284262148	3.69382234678094	3.79394969414184	3.91896395665614	4.11015732227153	0.161477093781851	0.732367127480796	0.893963778565797
Merged-chr11-70844766-4	chr11	70844667	70844867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291143)	promoter-TSS (NM_001291143)	6.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	6.45744926822739	6.20833407859659	5.73189507532558	5.74256018432557	6.22119099153156	6.26200739072775	5.70292141811198	6.14257720297193	0.0606795438107152	0.835361164120869	0.937340148198303
Merged-chr15-81857157-4	chr15	81857047	81857247	+	872.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020507, intron 1 of 1)	intron (NM_020507, intron 1 of 1)	1179.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	4.08050218831095	3.95354668500166	3.88351543722125	3.69665074704241	4.02276825762008	4.11043712500668	3.75784032064157	4.46871239900671	0.568331585068309	0.212854681126226	0.517816171020324
Merged-chr3-97617340-4	chr3	97617244	97617444	+	908.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-7154.0	NM_026539	68058.0	Mm.31761	NM_026539	ENSMUSG00000028089	Chd1l	4432404A22Rik|Alc1|Snf2p	chromodomain helicase DNA binding protein 1-like	protein-coding	4.98228564936463	4.57705206459306	4.52742227605989	4.09872882647333	4.67872180371642	4.52555066863089	4.58747310583189	4.682794056915	0.117784160800224	0.770516787338322	0.910208520553554
Merged-chr5-139287295-4	chr5	139287203	139287403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	33806.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	7.04450604578343	7.23320386368855	6.96946579685117	7.11204147142888	7.38321654922368	7.21023363653007	6.99788546077504	6.95138182376434	0.0808445075138307	0.687747172212256	0.87248085782591
Merged-chr6-87531198-3	chr6	87531121	87531321	+	720.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	MER5A|DNA|hAT-Charlie	2038.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	2.82877624238182	2.92966692356255	3.03114648439019	2.67984687871955	3.2990398154686	3.14326138823696	3.08038595936473	3.40607219121828	1.5732265972104	0.0076015368461695	0.0647707475520809
Merged-chr10-81542036-3	chr10	81541932	81542132	+	976.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010301, intron 1 of 6)	intron (NM_010301, intron 1 of 6)	3014.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	4.20110071491519	4.02612213047643	3.86683161802779	4.37722553817055	3.84526680561423	3.93158968807506	4.18266173651177	3.96944075483704	-0.429786403825656	0.332577518886488	0.643531688755946
Merged-chr2-157367685-4	chr2	157367594	157367794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026968)	promoter-TSS (NM_026968)	100.0	NM_026968	69161.0	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	6.02389445283159	6.33670752967608	6.49598306188131	6.00761468570377	5.97953451086435	6.13403793018757	5.97215260126496	6.02065798678993	-0.304365679426764	0.222862761281967	0.531019599146023
Merged-chr18-30444850-4	chr18	30444725	30444925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	171960.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	6.77356015358772	6.13698570887582	6.52609876480959	6.68759537662506	6.43389176413148	6.33031973073168	6.55554740739917	6.36672732052135	-0.192463743568347	0.418028621670326	0.711628236434313
Merged-chr5-100509443-4	chr5	100509340	100509540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8801.0	NM_001359914	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	7.45353919682608	7.50035792078046	7.13507810191345	7.05857657665172	7.51697364962913	7.5741050628294	7.55954912992848	7.34171199052181	0.279331009218639	0.155068553083568	0.440637693415433
Merged-chr15-5500517-2	chr15	5500417	5500617	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045274, intron 1 of 4)	L1Md_A|LINE|L1	4199.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	2.77738557299419	3.15824847966989	3.05860344377288	2.52701103526023	3.47739448154024	3.46124356344408	3.10852821235698	3.11898859549414	1.60957018662456	0.0150955948627015	0.105321441553835
Merged-chr8-72321495-3	chr8	72321401	72321601	+	860.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008452, exon 3 of 3)	3' UTR (NM_008452, exon 3 of 3)	2439.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	4.13322231349779	3.3376316383108	3.62882658998362	3.35685666811619	4.01895003142067	3.62971286206858	3.77123700509337	3.73459885228439	0.451009223815257	0.400794650931118	0.698500623344254
Merged-chr6-34399345-4	chr6	34399251	34399451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13011.0	NM_009731	11997.0	Mm.482073	NM_009731	ENSMUSG00000052131	Akr1b7	AR|Avdp|MVDP	aldo-keto reductase family 1, member B7	protein-coding	6.77991938573851	6.47500948272159	6.9160168521907	7.11626765369212	6.81183780554833	6.68999764851606	6.84217091722584	6.761975732925	-0.107311055233109	0.63215918933491	0.843729759303872
Merged-chr10-60407934-2	chr10	60407834	60408034	+	988.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 26 of 68)	intron (NM_001252635, intron 26 of 68)	8208.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	2.27201514247647	2.18885109516132	2.3339016397683	1.94432849855085	1.97763342346234	2.01213970312068	2.13259617841781	2.1386457458395	-0.842204187106377	0.311847585442226	0.623721459036536
Merged-chr10-95880335-8	chr10	95880250	95880450	+	904.2374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60313.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	3.48705663547916	3.46492097093985	3.88625956417783	3.49344438889415	3.36625942258051	3.82203629455991	3.53076184765166	3.59737234939607	-0.0186863272319025	0.970766460781435	0.98953696016025
Merged-chr2-77275282-4	chr2	77275180	77275380	+	969.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	5312.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	4.81642399512156	4.57180696554029	4.85351439935201	4.7965845928744	4.72088957660569	4.7950818770491	4.89925613246529	5.10784944438613	0.244870692486438	0.465850233075503	0.74623053314012
Merged-chr9-35050767-1	chr9	35050667	35050867	+	1000.0	f0_balb.idr	intron (NM_009178, intron 9 of 10)	intron (NM_009178, intron 9 of 10)	-65961.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	4.3031434436674	4.47101393620678	4.7128271773191	4.70491589588494	4.28111947354779	4.61420566911565	4.28531060362286	4.67424233083622	-0.222734204967529	0.564050928094834	0.806570732819143
Merged-chr7-75571156-3	chr7	75571050	75571250	+	688.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 3 of 36)	intron (NM_029332, intron 3 of 36)	115616.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	3.44907116511572	3.33157931304073	3.75640414790255	3.88310831580402	3.46068190568027	3.30744149741883	3.31743325591803	3.70788013532243	-0.567296695922985	0.298603411836253	0.610755524456686
Merged-chr2-61139118-4	chr2	61139033	61139233	+	892.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163982.0	NR_045335	100038493.0	Mm.388076	NR_045335	ENSMUSG00000075325	Gm13582	-	predicted gene 13582	ncRNA	5.59980213535662	5.37196160946992	5.03156908799933	5.6338923923129	4.46818108515253	4.5711360737759	4.86313388321761	4.67663582287137	-1.5685158740394	6.15672430706274e-06	0.000178650419670778
Merged-chr7-75699997-4	chr7	75699871	75700071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 16 of 36)	intron (NM_029332, intron 16 of 36)	-148367.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	5.70439033001397	5.4372261847306	5.77507235387994	5.93193053567331	5.4437310479719	5.42882713874465	5.35354882175724	5.37645150594791	-0.572374509381217	0.0409576878529298	0.204656178566774
Merged-chr13-32902707-3	chr13	32902601	32902801	+	780.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	-4561.0	NM_173051	380839.0	Mm.250802	NM_173051	ENSMUSG00000079049	Serpinb1c	EIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1c	protein-coding	3.76913670080023	3.17925073894696	3.51818557242487	3.63863009095332	3.53000695634834	3.45397187891444	3.44844353165173	3.81207017938796	0.0756368160917204	0.886571540543825	0.957444179369024
Merged-chr6-71224514-4	chr6	71224423	71224623	+	949.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160127, intron 6 of 9)	intron (NM_001160127, intron 6 of 9)	24644.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	4.57732563576452	4.88351017680957	5.56447554356566	5.346793614356	4.76388008750972	4.80712958948996	4.77499520507241	5.31799152957899	-0.416899599716111	0.289057860210433	0.601023849265867
Merged-chr7-133123382-4	chr7	133123229	133123429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009980, exon 1 of 11)	5' UTR (NM_009980, exon 1 of 11)	154.0	NM_009980	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	5.26429859840278	5.12559766472905	4.89605166589299	4.85141706069382	4.96709780050206	5.3476682345722	5.11767140230947	5.37277755895463	0.321646524023923	0.3165485527188	0.628496776400878
Merged-chr4-88439872-4	chr4	88439783	88439983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025760)	promoter-TSS (NM_025760)	-957.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	7.52209220747138	7.88481328944523	7.97071359665465	8.03362045637758	7.76133413937804	7.63210523497714	8.01659179414164	7.68001750354579	-0.119890892166576	0.533396213103042	0.788683474267955
Merged-chr17-25867916-4	chr17	25867813	25868013	+	907.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026633, intron 2 of 4)	intron (NM_026633, intron 2 of 4)	825.0	NM_026633	68241.0	Mm.328870	NM_026633	ENSMUSG00000025732	Mcrip2	9530058B02Rik|Fam195a	MAPK regulated corepressor interacting protein 2	protein-coding	4.40242690723949	4.10039849026634	4.22876516866884	4.14255211828452	4.3542694093737	4.25774039385474	4.38282485902647	4.55327396352432	0.425949241963099	0.268264004234499	0.580076430005696
Merged-chr14-27115259-1	chr14	27115159	27115359	+	620.0	f1_c57bl6.idr	Intergenic	Intergenic	-28734.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	3.27506576663826	3.33735572324592	3.16034356445308	3.24251901454099	3.27670684264597	3.14216329130194	3.26283059671085	3.03274337631572	-0.26115395218117	0.633433345021363	0.844651176689519
Merged-chr16-55790550-4	chr16	55790445	55790645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31593.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	6.64385780826032	6.06760218826845	6.68528081831545	6.43460479372255	5.93003915910144	5.95442524019652	5.94461955467017	5.71465415161513	-0.895402625024266	0.000473165915723835	0.00738909098624547
Merged-chr17-35814982-4	chr17	35814764	35814964	+	894.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6849.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	3.00986587067314	2.84900183691207	3.12536515356376	2.51791485063554	2.99225022315222	3.18248871531388	2.80738670585948	3.06734346459177	0.544586518686125	0.4079007528214	0.704075086986739
Merged-chr9-57589963-4	chr9	57589844	57590044	+	926.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027895, intron 1 of 15)	intron (NM_027895, intron 1 of 15)	492.0	NM_027895	71742.0	Mm.155877	NM_027895	ENSMUSG00000032308	Ulk3	1200015E14Rik	unc-51-like kinase 3	protein-coding	4.13919680501697	4.37804097330838	4.51192694839273	4.02477236528522	4.27399242262719	4.16332015553507	4.07398792675545	4.31699126154699	-0.130455667756275	0.752800190170075	0.902657672182807
Merged-chr18-39635845-4	chr18	39635695	39635895	+	964.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137702.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	5.14748194800406	5.07582197593877	5.32286537913553	4.97034814367157	5.12434842049697	5.04685945421889	5.09166852697926	4.74546367823415	-0.205776190284623	0.519620510900332	0.780230181959112
Merged-chr1-184622128-4	chr1	184622077	184622277	+	872.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64486.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	4.1045558218537	3.76276320160051	4.41720782696329	3.722167763795	3.76142884841343	4.03803412234506	3.89801173396129	4.01089113017822	-0.255799050687814	0.591190121269113	0.821525680896513
Merged-chr7-80832412-4	chr7	80832313	80832513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-29082.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	6.22705926733303	6.52864357241627	6.37345981268382	6.32718970826919	6.0238426030273	5.97636451645205	6.43916224555098	5.92081044929938	-0.399178273833784	0.101955688668705	0.350516999794714
Merged-chr7-116307536-4	chr7	116307432	116307632	+	932.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305185, intron 3 of 26)	CpG	844.0	NM_001305185	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	5.16242859723421	4.4599831580783	4.58485664944963	4.408057502844	4.49477354334371	4.5882767234556	4.56354024452301	4.62197708555213	-0.243769102568337	0.5347720312686	0.789393164945411
Merged-chr16-4420517-4	chr16	4420415	4420615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291910)	promoter-TSS (NM_001291910)	-17.0	NM_009624	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	6.56429110036517	6.44931284102342	6.22339833999951	6.64452749090711	6.51671034869769	6.5185806463769	6.77358627032598	6.29900277059467	0.0684888915358313	0.76623618875603	0.908559624172741
Merged-chr2-129387686-4	chr2	129387593	129387793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16554.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	6.12977514497533	6.54960184400025	6.02489908263042	5.48890421782785	6.33988548170496	6.47669454773659	6.30405743633524	5.66675283039738	0.207381045632932	0.5197503953633	0.780294300842915
Merged-chr8-40890417-3	chr8	40890303	40890503	+	840.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007514, intron 1 of 11)	MLT1B|LTR|ERVL-MaLR	28036.0	NM_001044740	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	2.81747777452329	2.82098584134161	2.81773340846974	2.60949552614245	3.67555843104769	3.77079964710857	3.717375765337	3.93812300222979	4.28201974512999	2.42943880888526e-10	1.75558400992532e-08
Merged-chr4-56134562-4	chr4	56134478	56134678	+	899.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-602103.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.3595319569389	3.91578873228197	4.485139912831	4.13469613272566	4.49225872728767	4.44481615196978	4.61204505832593	4.52119861816279	0.679745700621757	0.0823644513878468	0.311590102725309
Merged-chr16-36753251-3	chr16	36753155	36753355	+	953.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021301, intron 19 of 21)	intron (NM_021301, intron 19 of 21)	31707.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	3.60074934028483	3.26248433088264	3.84378841548616	3.70117592661825	3.33433787176514	3.54590871043647	3.78182033799779	3.59921579269329	-0.155279206342623	0.767355710628093	0.909004900573458
Merged-chr17-17837976-1	chr17	17837876	17838076	+	1000.0	f0_c57.idr	intron (NM_001162909, intron 6 of 8)	intron (NM_001162909, intron 6 of 8)	7001.0	NM_001162909	75202.0	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	7.1779822239138	7.76093691985786	7.11925829406676	6.92923443952415	7.48249707150619	7.84465387025188	7.63009302664297	7.10191559637354	0.342646468453052	0.17348288490635	0.467554835199636
Merged-chr1-57849320-3	chr1	57849223	57849423	+	944.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164566, intron 1 of 11)	MER5A|DNA|hAT-Charlie	3752.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	4.1528767606663	4.81380228131318	4.27848233598185	3.9728888076331	3.55306006488705	3.80971540736185	3.73161682879481	3.41129704485504	-2.02642278288289	0.000116795308438061	0.00230927934253231
Merged-chr1-161517560-4	chr1	161517431	161517631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22874.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	5.70880135596894	5.93206414769457	6.10148491099423	6.1236293088025	5.760602628656	5.69387549614541	5.62939206050857	5.45484514637702	-0.562058295197408	0.0335479198918073	0.18035554304977
Merged-chr5-8997235-4	chr5	8997127	8997327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023733)	promoter-TSS (NM_023733)	-81.0	NM_023733	74114.0	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	7.5383516452619	7.32061470363772	7.6526932832916	7.94040698762481	7.43651973856217	7.60290024778207	7.90922447284189	7.22659498066105	-0.097867190193116	0.663221869390115	0.860454250420379
Merged-chr3-104637790-3	chr3	104637702	104637902	+	948.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009196)	promoter-TSS (NM_009196)	-862.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	3.83654520412579	3.63904343764385	3.58673672702799	4.1227718499192	3.40669882203581	3.31785518574239	3.5170628683981	3.69072893381015	-1.07443255610865	0.0405199179947312	0.203425535544292
Merged-chr9-66126652-4	chr9	66126571	66126771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026635)	promoter-TSS (NM_026635)	60.0	NM_026635	68250.0	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	8.11303129789566	8.12460655230031	7.96528209977047	7.65708671924226	7.87190298441384	7.98135729095181	7.87086117428099	7.88914462395481	-0.0857783839494159	0.63607093487137	0.846003230633997
Merged-chr2-18698819-4	chr2	18698721	18698921	+	888.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001334)	promoter-TSS (NM_001001334)	-201.0	NM_001001334	381350.0	Mm.330024	NM_001001334	ENSMUSG00000037708	Spag6	Spag6l	sperm associated antigen 6	protein-coding	4.13034522789182	4.12290100886278	3.98349858515015	4.32721318040849	4.22273069887184	4.10585479715103	4.01792050572419	4.26050167134013	-0.00824487392559381	0.984036013263813	0.994232698662932
Merged-chr17-35048560-4	chr17	35048443	35048643	+	969.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1700.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	5.02585333953671	5.15845802142195	5.33267893580243	5.42102934789951	4.98813493551958	4.71134087148567	4.85722692267596	5.18538047521347	-0.579844703349223	0.0742077071984953	0.293478741564713
Merged-chr11-55164916-2	chr11	55164816	55165016	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153170, intron 7 of 9)	B3|SINE|B2	-13210.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	2.98461515782071	3.12710986330256	2.7138750689659	2.81241008221854	3.11462998002376	3.09434914889183	2.97434487965613	3.10040809712155	0.657657369331121	0.271498411930585	0.583222139604812
Merged-chr7-90042625-4	chr7	90042536	90042736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110364, intron 5 of 5)	intron (NR_110364, intron 5 of 5)	13477.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	6.11056687623318	5.89173608675563	5.73679331282454	6.22236668677983	5.71348876802392	5.83442149193432	5.60146453949307	5.83141063327444	-0.439752063329737	0.0936625831703964	0.334780004393173
Merged-chr1-128811061-1	chr1	128810961	128811161	+	794.0	f0_balb.idr	Intergenic	B4A|SINE|B4	-218762.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	3.58914134708457	3.36149261794373	3.36971371493982	3.75784743076733	3.65454735418715	3.35521128478592	3.29744693002564	3.58758500217433	-0.173566691264771	0.744614478567241	0.899296643574982
Merged-chr19-55552963-3	chr19	55552841	55553041	+	863.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	149263.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	3.95948037678601	4.0048251664847	4.26182737039191	4.17357106082581	3.84601986177589	3.68308274650616	3.67716601432892	4.05141579430239	-0.78611242006262	0.0811864080055072	0.309190333623542
Merged-chr9-114584006-3	chr9	114583917	114584117	+	662.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19648.0	NM_001042503	636931.0	Mm.17857	NM_001042503	ENSMUSG00000079259	Trim71	2610206G21Rik|AL022943|Gm1127|Lin41|lin-41|mLin41|mlin-41	tripartite motif-containing 71	protein-coding	2.95744969619581	2.68552805210352	3.39331501730061	3.15079116967395	2.88754004434767	3.06753004905343	3.06965720266819	3.07971953745605	-0.186216133625378	0.771183815944445	0.91036734532567
Merged-chr10-127555933-4	chr10	127555812	127556012	+	890.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 54 of 88)	intron (NM_008512, intron 54 of 88)	-21353.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	3.98992482734143	4.83951740499775	4.55807339210587	4.58004341417623	4.64976210582194	4.38544752173081	4.03234519410969	4.39208970279351	-0.318171920998361	0.470057219858278	0.74885746888454
Merged-chr13-30764517-4	chr13	30764405	30764605	+	766.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013674, exon 9 of 9)	3' UTR (NM_013674, exon 9 of 9)	15272.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	3.92456091874094	4.01979883990848	3.81881125248749	3.78963490109527	3.91227955394604	3.82378867508714	4.09611571113823	4.45602889225589	0.554220240153192	0.216448163272329	0.523018766797743
Merged-chr1-88284182-6	chr1	88284116	88284316	+	807.273804	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6637.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	3.7377131004948	3.22605059383817	3.78860690831352	3.64860510244832	3.74274252052379	3.80529791683328	3.67090731707137	4.01150250582794	0.585531603964854	0.241508392226003	0.552034276752374
Merged-chr15-98708162-4	chr15	98708073	98708273	+	941.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153518)	promoter-TSS (NM_153518)	-54.0	NM_153518	105833.0	Mm.26205	NM_153518	ENSMUSG00000003354	Ccdc65	4933417K04Rik|AI428139|AU020178|NYD-SP28	coiled-coil domain containing 65	protein-coding	4.55418758303066	4.99985939485347	4.10800715776126	4.31714974189599	5.01853719100074	4.77082207716627	4.72719808816406	4.5519795875814	0.524617523225965	0.20132271961519	0.503635815537538
Merged-chr14-101516763-4	chr14	101516649	101516849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	RMER19B|LTR|ERVK	92442.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	5.53217117080926	5.07444626240222	5.26049546686038	5.51582230328311	5.29810606693236	4.63148469313378	5.40367341825363	5.12896754025889	-0.38174829134272	0.262364934299932	0.574205136627458
Merged-chr16-5431881-4	chr16	5431768	5431968	+	953.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175912.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	5.94484058502728	5.88541043004189	5.80696909883625	5.54277098190558	5.06883304416074	4.85169452304129	5.02940711999654	4.84655092827687	-1.50148191331156	1.19571672222411e-06	4.12354266333284e-05
Merged-chr19-34435429-4	chr19	34435328	34435528	+	961.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39707.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	5.21626948981512	4.80478360813354	5.40255246427795	5.37116839178949	4.98402619729251	4.48647612806085	4.67240825140631	4.77412394179759	-0.923228239870434	0.0101473914787082	0.0797219843336614
Merged-chr4-33246153-4	chr4	33246062	33246262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033225, exon 2 of 2)	exon (NM_001033225, exon 2 of 2)	2625.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	6.10656488787676	6.13685722289967	6.8539070712489	6.56697926469248	6.66375150146238	6.24142916686497	6.99283167130154	6.27217655934184	0.186315360613276	0.516291484018081	0.778055376459244
Merged-chr4-53439111-4	chr4	53439019	53439219	+	954.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1294.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	5.20244635685632	5.40914374199454	5.26304491472256	4.90438773184502	5.23337539242727	5.37606011475893	4.70621966511072	4.81004062413798	-0.250234070538749	0.47472656388501	0.751855589262771
Merged-chr10-128372772-2	chr10	128372672	128372872	+	918.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-2735.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	3.18945141817377	3.57191773231638	3.13012257273366	3.07742715282443	3.09507622913915	3.11124901814192	3.05733194812827	3.18819347492453	-0.548254358599758	0.343854113736427	0.652462997484675
Merged-chr15-96757650-3	chr15	96757547	96757747	+	985.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57919.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	4.60833242047106	4.48281749177421	4.23056364935794	4.43088966019385	3.71085292530872	3.81515200169897	3.86279404496544	4.13654551321444	-1.48304540590367	0.000701667566003152	0.0101516002539437
Merged-chr10-117910629-4	chr10	117910528	117910728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44B|DNA|TcMar-Tigger	-14831.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	6.72909716146256	7.13915274553759	6.6698104879349	6.86120339045761	6.95125603426457	6.38806517582605	6.68122972311363	6.78314931565758	-0.196930470097075	0.390878938837211	0.690827133820675
Merged-chr15-64002129-4	chr15	64002027	64002227	+	970.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	-4061.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	5.10379890128902	5.05334634108166	5.32552578402532	5.54319115287237	5.2165972391177	5.24581566509957	5.4604456283324	4.99360638445909	-0.0911558834996253	0.774778943777855	0.912019422490638
Merged-chr2-92460606-3	chr2	92460515	92460715	+	773.476196	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145832)	promoter-TSS (NM_145832)	-97.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	3.1819250589718	2.96553921172639	3.12525355770617	3.17210056996671	3.03526478314372	2.97566309395451	2.86010618049491	3.43222685835991	-0.0829008480347114	0.890406565596736	0.958997364311038
Merged-chr1-161033957-3	chr1	161033825	161034025	+	769.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153814)	promoter-TSS (NR_153814)	924.0	NM_001356489	240869.0	Mm.296127	NM_173424	ENSMUSG00000043467	Zbtb37	D430004I08Rik	zinc finger and BTB domain containing 37	protein-coding	3.2339002101296	3.10957347412175	3.56955170846759	3.51400112057515	2.61300362398676	2.81141915682614	2.7740047823036	3.05690958713643	-2.59504951407949	0.000335070190857974	0.00555684089354141
Merged-chr1-44102502-4	chr1	44102414	44102614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029368)	promoter-TSS (NM_029368)	-73.0	NM_001356297	75623.0	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	8.32517943511023	8.00995249968141	8.18552617002171	8.45138244174301	8.08521927097815	8.05301005356095	7.89704095289664	8.11895013526427	-0.277923357951303	0.109420144551159	0.365262551996626
Merged-chr14-27042473-4	chr14	27042373	27042573	+	968.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134437, intron 1 of 12)	intron (NM_134437, intron 1 of 12)	3472.0	NM_134437	171463.0	Mm.206726	NM_027265	ENSMUSG00000040717	Il17rd	2810004A10Rik|AI428510|Sef|Sef-S	interleukin 17 receptor D	protein-coding	4.52210279828204	4.66495905321166	4.73454406121111	4.89538605144286	4.80781674854905	4.82946101997311	5.1627797123052	4.84345206708355	0.386541245140949	0.262057956130294	0.57408803151014
Merged-chr8-120796358-4	chr8	120796258	120796458	+	972.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57719.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	4.29331707785803	4.1139356845033	4.41450830185971	4.12919020022437	4.0877474381122	3.90560211375605	4.23203208684822	4.37275289834084	-0.187561294554415	0.650842229851096	0.853531930845514
Merged-chr17-31994807-3	chr17	31994709	31994909	+	758.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028902, intron 6 of 7)	intron (NM_028902, intron 6 of 7)	39699.0	NM_028902	74377.0	Mm.75856	NM_028902	ENSMUSG00000002076	Hsf2bp	4932437G14Rik	heat shock transcription factor 2 binding protein	protein-coding	4.02554442768366	3.38351760917633	3.76880108139965	3.51970959899795	3.48050505515883	3.56202558049297	3.54852489895258	3.56054394310919	-0.481869755781099	0.349274569587736	0.656818637583855
Merged-chr11-76612815-4	chr11	76612766	76612966	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35127.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	4.51330533551614	4.28272150329638	4.12725521009159	4.68106193029475	4.11897094409185	4.25264215728977	4.15871001290621	4.22131914963398	-0.607412876159767	0.137743791949561	0.412836977017044
Merged-chr9-110657801-4	chr9	110657713	110657913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	1310.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	7.29273823428599	7.19123222668693	6.77966620171242	7.31170478300934	7.37497059073144	7.10354665069168	7.40263703884563	7.11245538852646	0.123918625134718	0.55351336858858	0.800255537231239
Merged-chr5-139408698-4	chr5	139408600	139408800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	2313.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	7.84501936125258	7.52978266337185	8.07759810452196	8.0797069926128	7.77770136436274	7.74935190399092	7.93579723820655	7.84847593378749	-0.10034977969678	0.59755338043713	0.82540756969017
Merged-chr17-86283907-3	chr17	86283811	86284011	+	920.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	3267.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	3.67491543879047	4.2087784826463	3.96294295079141	3.6868747765792	3.43376811381583	3.62128249140061	3.54986039057547	3.37394407680536	-1.2729035278108	0.0134662544495968	0.0973506525967752
Merged-chr17-34391657-4	chr17	34391556	34391756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7164.0	NM_001001177	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	5.04971270333647	5.46789436026927	5.18971882212036	4.62316982688035	5.79621857795499	5.36621742358516	5.25863795296218	5.50506243985039	0.721348339931971	0.0364304270644724	0.189830261202202
Merged-chr18-20645431-4	chr18	20645340	20645540	+	972.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	RMER5|LTR|ERV1	-19810.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	4.68134241739124	5.22148149104643	4.68207812224705	4.89410204658456	5.06613837489439	4.85979202038232	4.96156780177965	5.14070222943599	0.233458841902285	0.489325365329803	0.761654315178772
Merged-chr2-125594189-4	chr2	125594097	125594297	+	874.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081091, intron 13 of 27)	intron (NM_001081091, intron 13 of 27)	30916.0	NM_001081091	99100.0	Mm.330545	NM_001081091	ENSMUSG00000068394	Cep152	AI851464|mKIAA0912	centrosomal protein 152	protein-coding	4.39885252696695	4.45450328067171	4.17141834785342	4.77001076503561	4.36738188794396	4.24579364618261	4.24910971508136	4.2649822959025	-0.47489918306471	0.239432688114599	0.549849308188708
Merged-chr9-62343632-3	chr9	62343513	62343713	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	CpG	2270.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	5.32925242165172	5.29704180303179	4.89099514149837	5.44300060446855	5.69227580741412	5.73030371552994	5.55454687737288	5.62874386717576	0.656752251856689	0.0244322268186937	0.146118184941642
Merged-chr11-75651942-4	chr11	75651845	75652045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080774)	promoter-TSS (NM_001080774)	-205.0	NM_001080774	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	5.45102195340346	5.3892504338167	4.82093604985044	5.41865762303483	5.59239973462382	5.56958162986408	5.71742674137356	5.17084280046639	0.397459957640525	0.210192783245363	0.514611912035968
Merged-chr4-135495180-1	chr4	135495080	135495280	+	739.0	f0_balb.idr	promoter-TSS (NM_028995)	promoter-TSS (NM_028995)	-211.0	NM_001361484	74552.0	Mm.26548	NM_028995	ENSMUSG00000028803	Nipal3	9130020G22Rik|AI480660|Npal3	NIPA-like domain containing 3	protein-coding	3.52131647021039	3.34699990269261	3.57587240761498	3.65953995245156	3.44488331301067	3.52053687665783	3.79890923394724	3.51988265198713	0.119834794408747	0.810831930182122	0.926854276252049
Merged-chr9-118606639-4	chr9	118606526	118606726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133721)	promoter-TSS (NM_133721)	-83.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.55586390867728	6.52423406337862	6.39207656583546	6.66309312117453	7.05808236719911	7.10346782402388	7.38159651502205	6.99666962065627	0.83191484910546	6.01188930248912e-05	0.00132242751363403
Merged-chr16-21631832-4	chr16	21631732	21631932	+	774.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	62833.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	3.71263284432997	4.07989510946442	3.92681832179901	3.53353120622041	3.89446827833663	4.09890371349257	3.8603607724163	4.1494239629187	0.513432779529754	0.267558030018397	0.579225825141073
Merged-chr13-103065681-4	chr13	103065559	103065759	+	900.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 3 of 28)	intron (NM_175171, intron 3 of 28)	268833.0	NM_175171	328329.0	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	4.36112322295726	4.57683733824206	4.56158714070681	4.5314959511696	4.30608236143898	4.08313804152033	4.34228795566048	4.22240003289053	-0.633198350215248	0.0975758391215233	0.342304122860074
Merged-chr5-123694663-4	chr5	123694567	123694767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10306.0	NM_001359222	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	6.87478637102708	7.30228488160573	6.87599124509185	6.71621225467053	6.88959621063376	7.09268306347421	6.88108871446815	6.80127850591613	-0.0522769099154521	0.812334456640695	0.927498023599686
Merged-chr3-148917999-4	chr3	148917901	148918101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081298, intron 1 of 23)	intron (NM_001081298, intron 1 of 23)	36634.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	5.47492171191938	5.71299355052223	6.03736504924586	6.04920990334098	5.74113992565165	5.42356611480128	5.86123129691635	5.93057361832206	-0.157666630377263	0.582360893453667	0.816519074787564
Merged-chr12-84180874-4	chr12	84180800	84181000	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	B4A|SINE|B4	13115.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	4.86877634851104	4.98800539022621	4.94322351730801	4.75956718898457	5.53561220644889	5.00755346513625	5.11611708252911	4.70538757108742	0.49674223845685	0.155338691102619	0.440979076070846
Merged-chr10-39369676-4	chr10	39369562	39369762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122892)	promoter-TSS (NM_001122892)	-137.0	NM_001122892	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	7.73699972211119	7.54620973856425	7.81476045916561	8.12710697302471	7.36531495556108	7.19005352416403	7.73163191415485	7.78701783788998	-0.380909608731444	0.0820258582844751	0.310956463934313
Merged-chr8-61561588-4	chr8	61561487	61561687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	29582.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	5.99524125130291	6.2030517909455	5.9080582640698	5.78002962994255	6.07258751733006	5.68869157802131	6.00731952512391	5.80906144933888	-0.0940099203536442	0.717870603450174	0.887198522120012
Merged-chr3-40500617-4	chr3	40500498	40500698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	22314.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	6.17905107063907	6.61155196258994	6.78856821614118	6.0603818205731	7.50080485505529	7.29912805773304	7.50972769827136	7.43328556381119	1.40682015328686	1.26305221930903e-09	7.9842623373177e-08
Merged-chr5-151368606-4	chr5	151368523	151368723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045699)	promoter-TSS (NR_045699)	-52.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	9.29139937430804	9.29620607640607	9.11157477112014	9.20477218935462	9.30506165806066	9.50806902175169	9.4995481062108	9.29876515657843	0.218320378382572	0.126478131468767	0.395335803610371
Merged-chr13-38204869-4	chr13	38204770	38204970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026382)	promoter-TSS (NM_026382)	-69.0	NM_026382	67797.0	Mm.250783	NM_026382	ENSMUSG00000021431	Snrnp48	1110050F08Rik|6530403A03Rik|C6orf151	small nuclear ribonucleoprotein 48 (U11/U12)	protein-coding	7.00314986964808	7.12983884136449	6.54675516753497	7.0878043540078	6.95860046841777	6.87527843473236	7.21435984576509	6.93601176150479	0.0439913624577421	0.840161668536392	0.939232419857578
Merged-chr13-95325315-6	chr13	95325211	95325411	+	936.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028106, exon 1 of 2)	5' UTR (NM_028106, exon 1 of 2)	486.0	NM_028106	72114.0	Mm.3774	NM_028106	ENSMUSG00000041995	Zbed3	0610037K01Rik|2610005H11Rik|AU018975|AU024588	zinc finger, BED type containing 3	protein-coding	4.28908828440804	4.15520378217613	4.14760712193465	4.70334066992389	4.18712240202761	4.32298095570539	4.39740333960738	4.41486207152152	-0.0918646794590541	0.825842275240547	0.933176074888032
Merged-chr15-96564036-4	chr15	96563939	96564139	+	957.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	77923.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	5.0453354336988	4.53047484102745	5.07643900730548	4.9448111318608	4.92719131126663	4.40110155886502	4.63305416258913	4.91399112799124	-0.344071272522693	0.351879873549102	0.659108597595279
Merged-chr2-181244117-4	chr2	181244017	181244217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2090.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	8.88762488361998	9.2635538095199	9.39828451929334	8.89025507944457	9.11439979457475	9.28978094657447	9.16327584614888	9.02802381480686	0.0301976162773632	0.863455341337234	0.948591391532472
Merged-chr11-69754849-4	chr11	69754761	69754961	+	905.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291068, intron 1 of 28)	MER119|DNA|hAT-Charlie	3772.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	4.49613071012909	4.59824956719538	4.36853047018299	4.10475363001783	4.63095448813172	4.58603192396895	4.34913258774332	4.5339492989074	0.327553166172066	0.395095063461427	0.694051201006319
Merged-chr6-137825521-4	chr6	137825424	137825624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172733, intron 6 of 8)	intron (NM_172733, intron 6 of 8)	70947.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	6.54924773453972	6.82761730073934	6.76554917310481	7.15605279125613	6.55298457887239	6.52970211950931	6.87691805720659	6.36609271428413	-0.376977255345567	0.114268993662468	0.373859772452381
Merged-chr4-16162253-5	chr4	16162145	16162345	+	930.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138102, intron 1 of 11)	intron (NR_138102, intron 1 of 11)	1398.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	3.5411697765408	3.82678474447974	3.41504799817975	3.62667275567004	3.79144827114744	3.8834275651823	3.89073770650501	3.95035531172677	0.773326704572959	0.0969549877198327	0.341129187855191
Merged-chr2-32859320-3	chr2	32859229	32859429	+	820.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12092.0	NM_001113569	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	3.39858218605515	3.52566247582103	3.50237782275376	3.03507410364469	3.34075857786378	3.3397646673327	3.01980760769953	3.28495524283791	-0.427374833554754	0.458493662468142	0.741416770167154
Merged-chr19-16456338-4	chr19	16456239	16456439	+	907.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008137, intron 1 of 6)	intron (NM_008137, intron 1 of 6)	20672.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	4.40246446854279	4.61387208330748	4.4031277053055	4.79346757830042	4.52976950842356	4.57873900358786	4.70498444145819	4.72437599627435	0.107467026990987	0.769444013991732	0.909742530773464
Merged-chr8-108715290-3	chr8	108715240	108715440	+	942.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	CpG	696.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	3.89786920078108	3.83681571699364	4.12917217211286	3.91674877645578	3.83532631851575	4.01980498459671	3.93132460075989	3.94569487051388	-0.0436746077423055	0.91909481285613	0.970285021467879
Merged-chr5-20936028-4	chr5	20935924	20936124	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	intron (NM_001080977, intron 1 of 7)	-14965.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	4.97438431321924	4.89851073367283	4.94094295759473	5.20934858479478	4.87784048671301	5.14723462757223	4.4685644266445	4.82900982288689	-0.343409192341617	0.323409276450165	0.634840414252573
Merged-chr2-11502115-4	chr2	11502050	11502250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177752)	promoter-TSS (NM_001177752)	-60.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	6.62609130435785	6.88362682870469	6.72218821108421	6.89447789425843	6.93924707809459	7.06945612039871	6.87127199296766	7.16187145605784	0.300614848973679	0.13404746776288	0.407670811685954
Merged-chr11-21564050-4	chr11	21563937	21564137	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316675, intron 4 of 8)	intron (NM_001316675, intron 4 of 8)	7897.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	5.182403054985	4.94946393814008	5.34491212702481	5.43507779729791	5.45363843224444	5.71445526136473	5.43347067156503	5.77356952580067	0.599443970391829	0.0459388062293363	0.219969644466309
Merged-chr11-83440467-4	chr11	83440365	83440565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172797)	TTS (NM_172797)	2771.0	NM_025492	66330.0	Mm.44800	NM_025492	ENSMUSG00000035085	1700020L24Rik	-	RIKEN cDNA 1700020L24 gene	protein-coding	5.8246320903065	6.01199767322372	5.47106656024742	5.67650987711703	5.66738277752756	6.13505157778749	5.84243575421653	6.11697644153794	0.299427386616925	0.277685032085666	0.589710979467901
Merged-chr18-4288007-4	chr18	4287892	4288092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64961.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	5.63631495599663	5.42077112555396	5.85097335484234	6.00914096609319	5.25800764259146	5.31953999185339	5.7541856585145	5.77958776640024	-0.36203979895646	0.23685924693551	0.546939313467077
Merged-chr11-76859451-4	chr11	76859351	76859551	+	980.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12443.0	NM_007754	12874.0	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	5.28640823767523	5.09477138331262	5.2873220588558	5.07448038639758	4.8890813205765	5.14136008026572	4.90535656606697	5.16477564168142	-0.297673395730894	0.336905547730862	0.646769375674115
Merged-chr7-140845133-4	chr7	140845062	140845262	+	886.8273929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099742)	promoter-TSS (NM_001099742)	-403.0	NM_001099742	338417.0	Mm.270960	NM_001099742	ENSMUSG00000038801	Scgb1c1	Ryd5	secretoglobin, family 1C, member 1	protein-coding	3.83191267338785	3.45711580089402	3.58396428405087	3.77514640809238	3.69745237602081	3.58384986510881	3.57017173346517	3.58203562629653	-0.195214666174197	0.686790989340383	0.871908413750359
Merged-chr4-95417326-1	chr4	95417226	95417426	+	758.0	f0_c57.idr	Intergenic	Intergenic	-140181.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	3.82860473778748	3.47636238312315	3.98542947215595	4.12501774505241	3.97290578399509	4.10925447374158	4.10622317110219	4.36170111272257	0.670216913078864	0.15860825356476	0.445618498595942
Merged-chr10-128343738-3	chr10	128343634	128343834	+	766.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026444, intron 1 of 10)	intron (NM_026444, intron 1 of 10)	6007.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	3.67502187769204	3.58022670169049	3.77306251010444	3.65771944166486	3.65896675109025	3.68607488015004	3.38207195916829	3.51186544455699	-0.325712810065095	0.501074000785003	0.769095113768232
Merged-chr16-94519193-4	chr16	94519069	94519269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 1 of 7)	MTE2b|LTR|ERVL-MaLR	7460.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	6.02009048297941	5.98594597417376	5.97846375732146	6.42349448736481	5.60992342844376	5.56270035432748	5.85845837484789	6.09803961496963	-0.535332816006782	0.0528197780691601	0.23971301856572
Merged-chr16-85072415-2	chr16	85072322	85072522	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 5 of 15)	intron (NM_001198825, intron 5 of 15)	100211.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	3.98525519731371	4.21121573216388	4.08904109613677	3.95163064009816	4.31546600612897	4.5659844109881	4.16748612490046	4.57731370109996	0.894843063401468	0.0256678437019654	0.151117572114325
Merged-chr14-64809951-4	chr14	64809860	64810060	+	830.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	139897.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	4.17624520800411	4.20310168087746	4.12882451900137	3.96980139558292	4.26585189312013	3.92022804822762	4.74451021928069	4.35014571596574	0.586615744187661	0.170501839300408	0.463684279922871
Merged-chr16-95945606-4	chr16	95945510	95945710	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16533.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	5.28610701817503	5.04519805682273	5.05478989956482	5.45027075218015	5.38893451635663	5.23195948243603	5.2303934407595	5.60260423948961	0.246052297853216	0.42418793807452	0.71604841147627
Merged-chr14-8002803-3	chr14	8002688	8002888	+	879.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331065)	promoter-TSS (NM_001331065)	-100.0	NM_025341	66082.0	Mm.181473	NM_025341	ENSMUSG00000025277	Abhd6	0610041D24Rik|AA673485|AV065425	abhydrolase domain containing 6	protein-coding	3.98180823736208	3.41309480065735	4.0234450874044	3.479255489956	3.33770093715338	3.65650021805442	3.68798631357752	3.64852312735632	-0.492983567010222	0.354484300921855	0.66114238694363
Merged-chr5-110770202-2	chr5	110770102	110770302	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152254)	promoter-TSS (NR_152254)	515.0	NM_029337	75560.0	Mm.270487	NM_029337	ENSMUSG00000029505	Ep400	1700020J09Rik|AU023439|mDomino|mKIAA1498|p400	E1A binding protein p400	protein-coding	5.14108906446203	5.21835203502704	5.27229679862762	5.40768750027337	5.45398806767806	5.31780247957804	5.41841507489455	5.32909756845184	0.193397488747558	0.497552813031852	0.767090702736496
Merged-chr5-101840596-3	chr5	101840484	101840684	+	954.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 66 of 66)	L1M2|LINE|L1	75454.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	3.21879606887226	3.1182700147989	3.08336828263256	3.22345985358484	3.76327620836972	3.51629391340309	3.38684045151915	3.74186299835322	1.53696717020495	0.00382465734024608	0.0386798560378567
Merged-chr14-45307949-6	chr14	45307879	45308079	+	875.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015774, intron 1 of 15)	B1_Mur3|SINE|Alu	10593.0	NM_015774	50527.0	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	3.32862667244509	3.4610285310285	3.44613365649377	3.49273150719186	3.27695700855198	3.17056261816141	3.43262561583088	3.94540742323571	0.185036461953034	0.740077121133507	0.897683586969888
Merged-chr6-65140598-2	chr6	65140498	65140698	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 1 of 5)	Lx8|LINE|L1	4132.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	3.78715525567119	3.15213227424319	3.27380217610387	2.86514306887568	3.18202455908742	3.26815328303865	2.94121292592577	3.21320885422251	-0.568505964858732	0.371828884048585	0.675818603178955
Merged-chr7-101546857-4	chr7	101546748	101546948	+	882.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	8954.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	4.355444300409	4.71613593903919	3.96272501783412	4.94263700311505	4.14136392721729	3.9029397228982	4.0557956163078	4.26564991019244	-1.10992276553185	0.0171474659811155	0.115264848528645
Merged-chr1-190170720-4	chr1	190170632	190170832	+	905.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008937)	promoter-TSS (NM_008937)	95.0	NM_008937	19130.0	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik|PROX-1	prospero homeobox 1	protein-coding	4.9954782281702	5.07371988793887	4.54685647271585	5.34099725511149	4.38465646111292	4.48637017654752	4.80454780496362	4.54399376350589	-0.994882338901278	0.00905735501656957	0.073445074900728
Merged-chr7-99500394-3	chr7	99500293	99500493	+	812.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16684.0	NM_012052	27050.0	Mm.236868	NM_012052	ENSMUSG00000030744	Rps3	D7Ertd795e|Rs_3	ribosomal protein S3	protein-coding	3.90723044843342	3.66012116699332	3.65308507463611	3.33709419163291	3.56114921365516	3.98359868453862	3.79538751531721	3.99447026955078	0.589059072557429	0.235820373592537	0.545860161228986
Merged-chr6-97508210-2	chr6	97508110	97508310	+	896.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-20390.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.27072534006482	3.0024826859798	3.10861566566618	3.14012340412459	3.14464795565334	2.96015970114919	2.84613109132465	3.10699735077422	-0.439147495177565	0.455682583966554	0.739074662629433
Merged-chr4-116685635-4	chr4	116685608	116685808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040442, exon 2 of 3)	intron (NM_011034, intron 1 of 5)	109.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	7.13151766662265	7.38498030185669	7.20131125153447	6.64773535286694	7.33943845202871	7.36713255780277	7.35973792479594	7.23994760671313	0.301038158031706	0.172074778454737	0.465300712518698
Merged-chr9-89197637-4	chr9	89197546	89197746	+	934.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16B2|LTR|ERVL	-1627.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	4.51871702040375	5.09009099573499	4.85960792995497	4.58482748280663	4.7957723137425	4.51336612599104	4.49897737598876	4.28040989472889	-0.501983803294656	0.198402665166666	0.499932855561389
Merged-chr16-10523022-3	chr16	10522928	10523128	+	768.688904	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007575, intron 15 of 18)	B3|SINE|B2	20026.0	NM_021428	58239.0	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	3.50883127236326	3.47763669843067	3.50930240370459	3.58186280545874	3.52183737704317	3.87973803180913	3.3202084522845	3.45083045645038	0.108642433421829	0.830413838805186	0.934980877782147
Merged-chr12-32209122-3	chr12	32209030	32209230	+	869.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_001146201)	promoter-TSS (NM_001146201)	-481.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	4.52594301683911	4.67138803980224	4.31327218962496	4.49078444618307	4.36499516485786	4.57541319448419	4.14897303193995	4.44270789320124	-0.275108832174287	0.469531410845205	0.748378822236993
Merged-chr16-55895363-4	chr16	55895262	55895462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134457)	promoter-TSS (NM_001134457)	-83.0	NM_001134457	385658.0	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	6.75808460264998	6.76053923180636	7.07069136537416	6.88902750698968	6.09357796550162	6.35658713732158	6.69630866115385	6.83653829486796	-0.509436449649458	0.0376975462271588	0.194116591398607
Merged-chr17-50190516-4	chr17	50190425	50190625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181397)	promoter-TSS (NM_181397)	-28.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	6.72974762701219	6.65645011889535	6.60705835038008	6.94042610110634	6.85445693057178	6.66545606721688	6.99559646127513	6.76959687094614	0.10707447459312	0.610413715480057	0.831664296731715
Merged-chr2-122348669-4	chr2	122348571	122348771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001099297)	TTS (NM_001099297)	20247.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	5.66476695598727	5.5621870158686	5.61199636618803	5.64747802574593	5.90531813779959	6.22103393319875	5.71320552694481	5.73828553990289	0.465295727181323	0.0767188006760998	0.299384183844523
Merged-chr4-48681147-4	chr4	48681055	48681255	+	846.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17641.0	NM_026509	68016.0	Mm.133444	NM_026509	ENSMUSG00000028348	Cavin4	2310039E09Rik|Murc	caveolae associated 4	protein-coding	4.05398526780624	3.84940502283349	3.75047342626636	3.94604034241526	4.23246383416778	4.08304888610442	3.8953337446754	3.85780705230053	0.345086508324098	0.430509143845651	0.721108120456474
Merged-chr14-27405765-4	chr14	27405665	27405865	+	945.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23069.0	NM_028945	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	4.37309683047226	3.93122608296939	4.28364881652964	4.4456789246963	4.77434341937444	4.5030969052794	4.55290272156747	4.28103570969999	0.610413818458145	0.132468665042696	0.405338625615772
Merged-chr7-67260040-3	chr7	67259942	67260142	+	831.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 7 of 11)	intron (NM_001357324, intron 7 of 11)	37426.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	3.86848991109523	4.08508013443393	3.9699310409442	4.24774551302634	3.88223922583196	3.98984656512297	3.62794825034112	4.10518853403705	-0.414693954382918	0.360336720171978	0.665793074685122
Merged-chr7-126976121-4	chr7	126976007	126976207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362232)	promoter-TSS (NM_001362232)	193.0	NM_001347656	52858.0	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	6.9784121767906	6.86855780541283	6.41498167129457	6.44309499928809	7.13434923837442	6.99932419092293	6.93199180171015	6.97469505788888	0.457439811156099	0.0411498267755958	0.205227264578204
Merged-chr15-58755292-4	chr15	58755188	58755388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68139.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	6.09766843064383	5.8294041688459	6.25315826666735	6.34682023050936	6.24812580744572	5.89728996845566	6.02605634485901	6.0312625246303	-0.139616912347994	0.58343666714132	0.817135070057298
Merged-chr10-34138238-4	chr10	34138135	34138335	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-10263.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	5.68142531745134	5.48108231343879	5.38787793807694	5.53794758247945	5.63732166230366	5.53313399047982	5.55495416164282	5.22396314241758	-0.0396795849197944	0.886827091971886	0.957513044740158
Merged-chr13-19430105-4	chr13	19430008	19430208	+	704.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34295.0	NM_001347485	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	3.61458301303251	4.17126933936686	3.79391276189737	3.66208898421808	3.86366087090446	4.42560931351555	3.93470305051583	4.08987324684246	0.715352647378797	0.13150446795038	0.403794336924208
Merged-chr11-46820082-4	chr11	46819991	46820191	+	978.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 5 of 8)	intron (NM_178759, intron 5 of 8)	9292.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	6.59390974018668	6.2017635990915	7.50711915125875	7.1485564373072	6.39074185603834	5.9379374690727	6.41444692375003	5.33616837848451	-1.26991329858212	0.0245852907114407	0.146734563772399
Merged-chr11-49848583-4	chr11	49848479	49848679	+	956.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016961, intron 1 of 11)	intron (NM_016961, intron 1 of 11)	1828.0	NM_016961	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	4.18914216241221	3.88878526679052	4.32317470276505	4.12521380861732	4.43807992060627	4.31634424209609	4.12436157678391	4.51528679790298	0.547538939531978	0.174866576480777	0.469511362911469
Merged-chr17-56134719-4	chr17	56134603	56134803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013662)	promoter-TSS (NM_013662)	-851.0	NM_013662	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	5.15274031643886	5.03568634993354	5.63821665228425	5.05111843417332	5.03979929116788	5.29560051495481	5.12834642711139	5.30435231760336	-0.0740514510854005	0.818692700788804	0.930475502974644
Merged-chr12-64917819-4	chr12	64917733	64917933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025605)	promoter-TSS (NM_001025605)	-78.0	NM_001025605	217648.0	Mm.341586	NM_001025605	ENSMUSG00000047227	Gm527	-	predicted gene 527	protein-coding	8.36307633433653	8.50632233059816	8.39174080700091	8.70443758672781	8.67824869220889	8.67822933728413	8.85610490543248	8.34230442371002	0.18509343431211	0.295075144926575	0.607132847913763
Merged-chr8-10007407-4	chr8	10007335	10007535	+	859.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033622, intron 2 of 6)	intron (NM_033622, intron 2 of 6)	802.0	NM_033622	24099.0	Mm.28835	NM_033622	ENSMUSG00000031497	Tnfsf13b	BAFF|BLyS|D8Ertd387e|TALL-1|TALL1|THANK|TNFSF20|Tnlg7a|zTNF4	tumor necrosis factor (ligand) superfamily, member 13b	protein-coding	3.41132911585861	3.43868613669036	3.62917484400161	2.97208783609302	3.59583933679735	3.58714195054841	3.4558680883464	3.72310858537863	0.735952284470946	0.178521486805385	0.474323694914601
Merged-chr12-3436676-2	chr12	3436576	3436776	+	895.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270988, intron 1 of 11)	L1VL4|LINE|L1	9819.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	3.42310761618611	3.44961879206279	3.53454688892861	3.28690232841484	3.81130847817189	3.53827436703934	3.35236548528639	3.53255606378599	0.531911230984564	0.29465014662286	0.606767041413815
Merged-chr9-20976832-4	chr9	20976718	20976918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010333)	promoter-TSS (NM_010333)	-25.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	6.04649808300262	6.17913672911924	5.52768106085584	6.13268561480337	6.04430149653115	5.54732929640673	5.82039510289608	5.93749593863903	-0.233028332325944	0.406190400123575	0.702759448977807
Merged-chr17-69204010-4	chr17	69203911	69204111	+	887.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	44655.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	4.58942224697222	4.16844668703747	4.66212707695784	4.73639808836158	4.43871061503045	4.0509477326933	4.37019543404982	4.34308755058011	-0.574585233697979	0.156433275972686	0.442329644875852
Merged-chr6-92199629-4	chr6	92199521	92199721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030081, intron 7 of 11)	intron (NM_030081, intron 7 of 11)	15190.0	NM_030081	78287.0	Mm.290734	NM_030081	ENSMUSG00000014550	Rbsn	5330426D11Rik|Zfyve20	rabenosyn, RAB effector	protein-coding	5.9030420485451	5.49675849638438	5.38070957628952	5.69049185628138	5.71371804495724	6.05555411426429	5.53352359514842	5.85630407754673	0.269851559916559	0.337571936721569	0.64733890902776
Merged-chr5-100635902-4	chr5	100635820	100636020	+	798.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38336.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	3.26979542528528	3.41696057648759	3.38998352705962	3.6142823115058	3.71033125406154	3.44342643565664	3.31983142571816	3.38824411317421	0.141719851737851	0.789361170966952	0.918416051592211
Merged-chr3-122509332-4	chr3	122509256	122509456	+	876.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013867, intron 5 of 11)	intron (NM_013867, intron 5 of 11)	25787.0	NM_001355264	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	3.59300326234456	3.97093946512921	3.92474265692288	3.99072633616464	3.75809631441696	4.04658449735072	4.12849936076116	3.82116290061759	0.151347575843799	0.740900588732093	0.89809586945461
Merged-chr4-47258759-3	chr4	47258656	47258856	+	920.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009928, exon 8 of 40)	exon (NM_009928, exon 8 of 40)	50744.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	3.69132213853976	3.68812598093733	3.69183084670238	4.03285514919297	3.63967852160973	3.44431304481517	3.62414857899768	3.88401668210512	-0.426216008985422	0.387342049995384	0.688198786296775
Merged-chr9-121719041-4	chr9	121718944	121719144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010918)	promoter-TSS (NM_010918)	-137.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	8.85613246960844	9.16097368713254	8.63928644355331	8.52357795315125	9.20685060164584	9.1975191696685	9.07835082173139	8.79986399817378	0.329580519163549	0.0851678448126445	0.317690075773987
Merged-chr16-24426410-4	chr16	24426302	24426502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-21689.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	5.2714769811206	5.93295521885002	5.6530125655772	5.66523616761987	5.61779936973674	5.38245584547677	5.62441680855048	5.69858600983063	-0.115394014053172	0.686533860547029	0.871787672169905
Merged-chr8-46890466-4	chr8	46890365	46890565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96422.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	6.91136086942161	6.71147786560703	6.26568841280938	6.6177874990641	6.62532035342016	6.33787865597962	6.67828469407418	6.85741084910846	-0.0099527605185021	0.966629739165703	0.98821869188894
Merged-chr11-78019883-2	chr11	78019783	78019983	+	824.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_174852, intron 7 of 14)	intron (NM_174852, intron 7 of 14)	-12430.0	NM_183286	70451.0	Mm.390342	NM_183286	ENSMUSG00000020834	Dhrs13	2610209N15Rik	dehydrogenase/reductase (SDR family) member 13	protein-coding	2.21509157079559	2.51272282399502	2.21527318049712	2.13886760381246	2.31565837736281	2.53759655240013	2.54763701449495	2.61559047462745	1.33231979462362	0.0748465631813562	0.295089558974667
Merged-chr3-58508520-4	chr3	58508414	58508614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-17307.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	6.78797599314404	6.58025334748759	6.78917148391075	7.07234699118822	6.10380578383463	6.43615377104606	6.36159651195353	6.68576435815556	-0.616261173067788	0.0100926279089114	0.0794657268268161
Merged-chr3-98050855-3	chr3	98050755	98050955	+	920.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	37317.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	3.59350451337127	3.25281301396837	3.35903274366101	3.87387062175054	3.28938088771242	3.5988043234717	3.57936977109413	4.03977915608151	0.31410020236474	0.584051410554284	0.817501676178582
Merged-chr9-123924247-4	chr9	123924158	123924358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44434.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	6.85415380628898	7.02225693494483	6.44887542021301	6.69307176659737	7.41449659311838	7.09990217125669	6.97657690683827	7.11287926678982	0.551198039400511	0.0123446040559955	0.091622194589231
Merged-chr7-134692649-4	chr7	134692542	134692742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033420, intron 1 of 51)	ORR1D1|LTR|ERVL-MaLR	21955.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	5.16056940968515	5.75287886165574	5.40560473343551	4.98662645288135	5.3096453982523	5.30397976927197	5.32208713299057	5.08890913455621	-0.161629637694139	0.623620363957472	0.839057402560226
Merged-chr14-79587465-7	chr14	79587391	79587591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026474)	promoter-TSS (NM_026474)	-169.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	6.86915142401153	6.90425400176225	7.16882935366981	6.30452542144876	6.93672690751864	7.12509363924442	6.693426054007	6.91825747683845	0.129620887671276	0.604286764600817	0.828454469799526
Merged-chr8-88636120-4	chr8	88636009	88636209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027840)	promoter-TSS (NM_027840)	19.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	7.11686908916156	7.22752295860495	7.15343536996306	7.19878461187196	7.14237703654547	7.41983589534094	7.30022519826909	7.37111997475342	0.173590805905497	0.339051390251571	0.648338238991188
Merged-chr4-116464811-4	chr4	116464711	116464911	+	975.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008641)	promoter-TSS (NM_008641)	-630.0	NM_008641	17776.0	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	5.01885333875973	5.25307748559516	4.64923522534615	4.79787332516634	4.76701051456946	4.9079730663273	4.89567222198298	4.72929815201105	-0.245983972699227	0.476171525478728	0.752752032426828
Merged-chr7-28339784-1	chr7	28339684	28339884	+	1000.0	f0_balb.idr	Intergenic	B3|SINE|B2	-1065.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	5.61668191231935	5.52732467647444	5.20874284691836	4.95334853228933	5.63459477692034	5.6606816463505	5.707273914662	5.42573391766467	0.482738669494209	0.115679857220069	0.376341540155735
Merged-chr3-89731179-4	chr3	89731079	89731279	+	833.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146296, intron 1 of 14)	intron (NM_001146296, intron 1 of 14)	461.0	NM_019655	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	3.75479528594434	3.51673535246461	3.69861890287657	3.93267354886088	4.00220653588747	4.22022348830291	3.74052441194562	4.21401029415613	0.851162643099361	0.0720754395579392	0.288483044467589
Merged-chr10-67031391-4	chr10	67031300	67031500	+	976.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110511, intron 3 of 6)	intron (NR_110511, intron 3 of 6)	26325.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	5.27737718188078	5.55803965761727	5.21296332126143	5.28618864200519	5.65208303497505	5.01068201290713	5.7849192474783	5.42450310346514	0.294556084691604	0.346016331700182	0.654337817814796
Merged-chr10-84576958-3	chr10	84576856	84577056	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146008)	promoter-TSS (NM_146008)	9.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	5.33676347934507	5.29454160438002	5.60364241781725	5.46079461033539	5.07458072905529	5.48180252167588	5.28140797101116	5.10794867305327	-0.34849253158983	0.238768372374701	0.549138711339909
Merged-chr9-111056126-4	chr9	111056028	111056228	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001302376, exon 3 of 3)	exon (NM_001302376, exon 3 of 3)	1116.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	5.9258305503183	6.41250153382703	5.66002317508082	5.09023608038142	5.50278506280403	5.17945600247357	4.92824797493811	5.31784119297322	-1.02859720446434	0.00701718499256221	0.0609777838433794
Merged-chr3-27453837-6	chr3	27453780	27453980	+	886.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 22 of 26)	B3|SINE|B2	82529.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	4.15078043177292	3.89946702102215	4.1957305394507	4.22678425364914	3.96099101471798	4.27650361521772	4.0406770182041	4.1030127351471	-0.0933318049706475	0.823099589303094	0.932185203682946
Merged-chr10-7474431-4	chr10	7474334	7474534	+	924.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029975)	promoter-TSS (NM_029975)	-957.0	NM_029975	77777.0	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	4.8847368997571	4.99508346475813	4.80884135355569	4.23671478008227	5.41465651544927	5.41211997880361	4.93371613939407	4.91892527443462	0.876743551596077	0.0197667231380395	0.127075107138955
Merged-chr15-53196012-1	chr15	53195912	53196112	+	691.0	f0_balb.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	150171.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	3.30857879025216	2.99044581553885	2.93675872939313	3.38920979541768	2.65006847918998	2.69100645084555	2.72954813725868	2.73606845586974	-2.35969847399397	0.000909795525738028	0.0124871453387017
Merged-chr14-66225232-6	chr14	66225148	66225348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-11424.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	4.75985810234715	4.90447930150947	4.94721206760874	5.03295772864036	4.79167976452065	5.24963152869334	4.77769399951967	4.97808811469058	0.0597489671978053	0.857482252197921	0.94630421453682
Merged-chr7-25248484-6	chr7	25248381	25248581	+	970.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010155, intron 1 of 3)	intron (NM_010155, intron 1 of 3)	2277.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	4.3224000152396	4.25093269173089	3.93463631880574	4.3013025045114	4.33974591724605	4.11320679875338	4.30349288908047	4.36149887116133	0.165457314270894	0.679416254883103	0.868428351434346
Merged-chr3-106484142-3	chr3	106484038	106484238	+	962.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033207, intron 1 of 1)	intron (NR_033207, intron 1 of 1)	1688.0	NM_001278941	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	3.7899789251648	3.54606174386512	3.21620814771994	3.12003970390603	3.9533014709372	3.81493047524257	3.40328126034158	3.69180752031335	0.929627209493497	0.0927571564123034	0.333238914384829
Merged-chr7-67451573-4	chr7	67451424	67451624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78666.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	6.21692178480983	6.69845642036862	6.33843734103024	6.12583921817458	6.90872753493807	6.62544933419413	7.00372991398397	6.46123312549043	0.601528392991114	0.0150494353683117	0.105071482107019
Merged-chr16-25846764-4	chr16	25846678	25846878	+	991.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127262, intron 2 of 10)	intron (NM_001127262, intron 2 of 10)	44862.0	NM_001127264	22061.0	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	4.04853165437248	3.95296850811769	4.41505004819274	4.6670680295962	4.87669247131677	4.45232501999946	5.33954291630894	4.58346663821269	1.16184125571544	0.0114959192632862	0.0870917716168665
Merged-chr19-41381885-4	chr19	41381804	41382004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 1 of 16)	intron (NM_031376, intron 1 of 16)	3166.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	6.72758361908502	6.76589464825673	6.58190882349801	6.65308363411843	6.4091548705146	6.57426404767596	6.25226497460653	6.04223522419812	-0.509776103587741	0.023023272516398	0.140486370719648
Merged-chr10-21192579-3	chr10	21192468	21192668	+	735.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	5624.0	NR_152786	102636600.0	Mm.227606	NR_152786	ENSMUSG00000111005	Gm33619	-	predicted gene, 33619	ncRNA	3.55865406538793	3.71771306299137	3.66187374024231	3.55792855198168	3.14576708804525	3.67640438037528	3.43461442676546	3.44573042723423	-0.650606810983411	0.212743976382153	0.517670706102327
Merged-chr11-5945325-4	chr11	5945207	5945407	+	737.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010292, intron 1 of 9)	intron (NM_010292, intron 1 of 9)	4774.0	NM_010292	103988.0	Mm.220358	NM_010292	ENSMUSG00000041798	Gck	GLK|Gk|Gls006|HK4|HKIV|HXKP|Hlb62|MODY2	glucokinase	protein-coding	3.49341959618053	3.86589089852408	3.84424102835954	3.82859031608572	3.63764470591034	3.80053653943168	4.32466969907578	4.07562548246939	0.592843033381209	0.225041612925721	0.533461117209175
Merged-chr14-70833948-2	chr14	70833850	70834050	+	665.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-18983.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	2.45044064216411	2.39497939636457	2.45064487853386	2.0937554097675	3.08848221645163	3.2647175959683	3.37226453834558	3.29470213073941	7.17860560769695	1.57435875285655e-12	1.63295907048893e-10
Merged-chr2-155757490-2	chr2	155757420	155757620	+	796.083374	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	6303.0	NM_011171	19124.0	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	2.63936647629382	2.4957196377991	2.55464255098899	2.22643319835833	3.61190625055217	3.51745118689224	3.05406322793519	3.34200813532657	5.67794373512812	2.62365623123573e-11	2.21266856496597e-09
Merged-chr12-108639400-4	chr12	108639354	108639554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	3701.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	7.6066250193041	7.87832046583909	7.96379079539153	7.70409537264282	7.53820612235883	7.61699955773052	7.57059956608151	7.50247492792387	-0.310218458653101	0.0751675561496625	0.295910153153964
Merged-chr6-123262096-4	chr6	123262005	123262205	+	810.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010819)	promoter-TSS (NM_010819)	-2.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	4.43663961907994	4.3876195831313	4.62621690061856	4.30122289218094	4.29793478092865	4.34265679980098	4.53236641643377	3.94609654237303	-0.327364629094098	0.417000818680082	0.710780806498163
Merged-chr16-38821048-5	chr16	38820887	38821087	+	800.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029042, intron 3 of 3)	intron (NM_029042, intron 3 of 3)	7762.0	NM_029042	74663.0	Mm.50263	NM_029042	ENSMUSG00000022798	4930435E12Rik	TSCPA	RIKEN cDNA 4930435E12 gene	protein-coding	3.03485954804289	2.56363469838755	3.15030554787684	2.66722196751259	3.04740512892579	3.02044797822927	3.29014956965616	3.03362080621655	0.966292220055835	0.142852901954723	0.42081391831458
Merged-chr17-34899632-12	chr17	34899453	34899653	+	893.930542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001286573, exon 2 of 26)	exon (NM_001286573, exon 2 of 26)	579.0	NM_145830	110147.0	Mm.35345	NM_145830	ENSMUSG00000013787	Ehmt2	Bat8|D17Ertd710e|G9a|KMT1C|NG36	euchromatic histone lysine N-methyltransferase 2	protein-coding	3.37791266636912	3.40584264864189	3.43467308455331	3.39083254088567	3.42454488563305	3.49160593455144	3.36588362721188	3.53824177043828	0.184420078526202	0.709946920370784	0.883897637702192
Merged-chr3-52179997-3	chr3	52179922	52180122	+	825.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75016.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	3.28259281150192	3.26810931100026	3.63441487025707	3.41946654170353	3.36488538233577	3.13744025133226	3.27083952441901	3.02723984733712	-0.714971952536049	0.205085249464219	0.508670650372587
Merged-chr16-38711412-4	chr16	38711315	38711515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	1620.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	6.71879862582149	7.32343486904288	6.51302124348652	6.83055559287806	6.50369716751115	6.88139755936381	6.83778377333576	6.32641310236674	-0.335721407193426	0.198524405468966	0.500061596682538
Merged-chr12-40430775-4	chr12	40430666	40430866	+	952.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172575, intron 1 of 12)	intron (NM_172575, intron 1 of 12)	15024.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	4.75575013556848	4.97886238535025	5.09367893527041	5.5683322748265	4.89762446457203	4.85013242791481	5.50557115345727	5.02258549796775	-0.111520915015369	0.766981032237255	0.908816541333989
Merged-chr9-56506125-4	chr9	56506039	56506239	+	971.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87520.0	NM_025812	66867.0	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	4.57810307660982	4.95033532356255	4.35107934311647	4.4451204978983	4.85952084628025	4.71164541246831	4.74957339274317	4.73285094133568	0.362677794635402	0.31816448233706	0.63005001767612
Merged-chr5-125334803-3	chr5	125334726	125334926	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	6268.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	3.42331587049106	3.53707788956936	3.70263655819768	3.48838462774258	2.96891805883793	3.17869404422623	2.83895535984992	2.99537010688327	-2.248088423944	0.000340516581596999	0.00562985679015233
Merged-chr6-31218456-4	chr6	31218375	31218575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110471)	promoter-TSS (NR_110471)	-1.0	NR_110470	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	6.30052569593848	6.54087992834698	6.17759252501139	6.40472284092471	6.80240307739047	6.7272591539444	6.76506970218906	6.69847943482639	0.551310562725208	0.00875587365673728	0.0717103130839838
Merged-chr6-119918867-4	chr6	119918753	119918953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149727, intron 7 of 10)	intron (NR_149727, intron 7 of 10)	16155.0	NM_001166383	19365.0	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	6.44413519118828	7.01208405676164	6.96211776116969	6.75618379258142	6.39406778152754	6.34791632050022	6.46421430864422	6.34864364029437	-0.611562353970159	0.00673365132147604	0.0591721688162152
Merged-chr8-106902107-2	chr8	106902007	106902207	+	994.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358982, intron 5 of 16)	intron (NM_001358982, intron 5 of 16)	8467.0	NM_001358982	21771.0	Mm.10665	NM_011574	ENSMUSG00000041438	Utp4	Cirh1a|Cirhin|Naic|Teg-292|Tex292	UTP4 small subunit processome component	protein-coding	2.86967756067841	2.87709420607084	2.98547531338325	3.25665978462187	2.8199571460099	2.54690863156948	2.6675996741933	2.74197656237952	-1.48324726767308	0.0330225783886119	0.178298877882349
Merged-chr13-75789626-4	chr13	75789533	75789733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50252.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	7.39821944559507	6.9112303425816	7.17634479373049	6.99958992591326	6.80461218262112	6.97127303385031	6.63891121435827	6.21602012661257	-0.615778775330691	0.010476328202663	0.0816573111188515
Merged-chr6-65151948-4	chr6	65151848	65152048	+	924.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-7218.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	4.71805649605075	4.60949423427234	4.5620978445619	4.66821740652627	4.57453799316772	4.46445467918344	4.62126996568394	4.9190969048127	0.0259497457797879	0.941306402211542	0.978834892666404
Merged-chr11-8567351-4	chr11	8567237	8567437	+	969.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	97198.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.28934259277832	6.05549347443682	5.64713812919988	5.41436357532747	6.00776801866729	6.01295394417391	5.64396003655281	5.1422735909727	0.195558681845542	0.565411118130958	0.807541819254018
Merged-chr1-191329184-4	chr1	191329088	191329288	+	946.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025864, intron 2 of 7)	intron (NM_025864, intron 2 of 7)	3223.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	4.69271804665608	4.26993391390509	4.0521000413895	4.54507210378722	4.86550428391378	4.79041453257225	4.6346594925793	4.40895171367776	0.594838017114895	0.133871211976235	0.407388584748032
Merged-chr17-32091464-4	chr17	32091407	32091607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027316)	promoter-TSS (NR_027316)	-84.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	6.09676337118664	6.22097585293284	6.11916584666458	6.13238672590707	6.43618230607666	6.29568573340979	6.52708476434686	6.25470543571541	0.366678632588759	0.0977595141739229	0.342560156519749
Merged-chr15-84982087-4	chr15	84981975	84982175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	5896.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	6.09392085524129	6.14320654803446	6.09499495392211	6.48628960558632	6.3005553632782	6.18332869933475	6.22430654522191	6.49208352541933	0.105872764803806	0.661711220107516	0.859533897618157
Merged-chr19-4192028-4	chr19	4191935	4192135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031868)	promoter-TSS (NM_031868)	-139.0	NM_031868	19045.0	Mm.1970	NM_031868	ENSMUSG00000040385	Ppp1ca	Ppp1c|dism2	protein phosphatase 1, catalytic subunit, alpha isoform	protein-coding	8.09292820852835	8.41077631064014	8.2518836213734	7.94958382928044	8.08710836078935	8.3287858143201	8.36275861933963	7.93072278241532	0.00491924460690544	0.979104028117577	0.992606608380485
Merged-chr9-100377888-3	chr9	100377771	100377971	+	776.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108602.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	3.68620973764539	3.83863676865275	3.78782345336724	4.10972880134194	3.74252552816767	3.57185531986777	3.44560149645305	3.45558955429207	-0.954610160652024	0.0569365682179612	0.250011597112045
Merged-chr5-105559331-4	chr5	105559245	105559445	+	825.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	L1MA5|LINE|L1	39874.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	4.06001633354518	3.98462639102573	4.20009679241034	3.64833217670467	4.22604353818809	4.23477052553512	4.34429131845317	4.19743705303629	0.734854632116999	0.0856217727040383	0.318707445413073
Merged-chr3-57550658-3	chr3	57550547	57550747	+	831.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133784, intron 2 of 6)	intron (NM_133784, intron 2 of 6)	25229.0	NM_133784	97064.0	Mm.405029	NM_133784	ENSMUSG00000027803	Wwtr1	2310058J06Rik|2610021I22Rik|C78399|Taz	WW domain containing transcription regulator 1	protein-coding	2.94423078944346	3.13631447922876	2.99993412909472	2.83213225747422	2.58921739912954	2.65687984227267	2.46897551767506	2.69494181624462	-1.95064071024771	0.00639721081532875	0.0569099043620644
Merged-chr2-75585145-4	chr2	75585042	75585242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74117.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	7.17132722032515	7.36110536863255	7.088586732552	7.10977460431811	7.50145202014887	7.5226569385983	7.64294693881076	7.09594380263399	0.366269558861233	0.0661924441077801	0.274082073715162
Merged-chr12-85492287-4	chr12	85492205	85492405	+	990.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18415.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	5.13774832390507	4.7826960557528	4.61402982137418	4.70251981262499	4.83330200977832	5.39863938453542	5.2013204629944	5.19503466942078	0.67570680717425	0.0484218953291648	0.227184898005051
Merged-chr8-57487194-4	chr8	57487148	57487348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126555)	promoter-TSS (NR_126555)	612.0	NM_021788	60406.0	Mm.118	NM_021788	ENSMUSG00000031609	Sap30	30kDa	sin3 associated polypeptide	protein-coding	5.33802347878485	5.32405649425362	5.50851630358768	5.56154773981601	5.1701099072848	5.21252516040045	5.50676238987482	5.55638603472514	-0.140048362505275	0.630779276708638	0.843080239167104
Merged-chr6-128841048-3	chr6	128840961	128841161	+	800.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14746.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	3.53954050806511	4.39355222195577	3.60137063231406	3.01269995497073	4.05737635182427	3.94715381553871	3.5266552309332	3.91784869538313	0.344158777830548	0.57711021887563	0.813924639099529
Merged-chr6-6186647-2	chr6	6186547	6186747	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177572, intron 2 of 17)	B1_Mus1|SINE|Alu	30526.0	NM_015829	50799.0	Mm.24513	NM_015829	ENSMUSG00000015112	Slc25a13	AI785475|Ctrn	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	protein-coding	3.16832981339828	3.19229116901875	3.05077094438981	2.92568999147922	2.91490338390911	2.88555426374095	3.03983395767392	3.42096239447636	-0.00635601981732256	0.99161653510833	0.996772106195311
Merged-chr8-22476907-4	chr8	22476806	22477006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001012667)	promoter-TSS (NM_001012667)	-27.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	6.45259690387286	6.28270275289185	5.79019744665451	6.3302712579223	6.43734090035877	6.54331152687473	6.59089266680055	6.44911833640782	0.385402278248725	0.107154753852999	0.361174191077289
Merged-chr8-10841285-4	chr8	10841175	10841375	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41179.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	5.72618490859182	5.5814741608253	6.22786306397928	6.11863650089055	5.15501126241098	5.11982669185143	5.28387463078357	5.16840245709861	-1.31867840485374	1.16590077934701e-05	0.000316263916056177
Merged-chr13-44730617-4	chr13	44730519	44730719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205044)	promoter-TSS (NM_001205044)	-155.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	8.39781899858429	8.6249665482191	8.11156145628241	8.29291350275281	8.49119366289149	8.40280613798772	8.70902666196592	8.17674513409462	0.113362340043898	0.546785261217757	0.796555214156745
Merged-chr3-153408074-4	chr3	153407972	153408172	+	886.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	-109423.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	4.52274078969285	4.13187920614971	4.60218954583518	4.73357356191114	4.46226816466827	4.22105316993779	4.58051818869463	4.77653918557975	-0.00171277966335052	0.996597415596818	0.998649443287934
Merged-chr4-145254577-4	chr4	145254470	145254670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-7700.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	7.43607858736796	7.69266013203387	7.40836960561941	7.15056755827974	7.48647548227626	7.56576456047415	7.01311226614055	7.43220124074395	-0.0500509689599292	0.81513328544018	0.928710624683246
Merged-chr6-54327843-4	chr6	54327702	54327902	+	936.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030024, intron 1 of 1)	CpG	790.0	NM_030024	78004.0	Mm.41984	NM_030024	ENSMUSG00000045725	Prr15	E130201N16Rik|G90	proline rich 15	protein-coding	4.28950349109192	4.57701429507231	3.7129472966765	4.01126379627468	4.31037911385389	3.96088934976069	4.18367252340223	4.44643698805397	0.133258951055046	0.775127792147578	0.91224145329603
Merged-chr2-124651312-4	chr2	124651266	124651466	+	829.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	-2215.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.52694369192307	4.00314126180588	4.34356517642749	4.07038715376939	4.32440090432182	3.73782839387784	3.90866406443325	4.21575066854291	-0.425713940587178	0.357038557580295	0.663316563307698
Merged-chr2-62646196-4	chr2	62646111	62646311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027835)	promoter-TSS (NM_027835)	44.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	7.28248810896812	8.02634102196748	6.95463395923992	7.35280019684948	7.89813826933795	8.07453146330533	7.46129825433738	7.44535524223821	0.368977500297454	0.166644228220206	0.457960964592688
Merged-chr11-48800372-4	chr11	48800220	48800420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008143)	promoter-TSS (NM_008143)	-40.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	6.28038228446578	6.42951492078055	5.97344945295025	5.96428656836662	6.93994516521769	6.96466188507807	6.20967067220836	6.73151252359607	0.845777848518843	0.00126218275549037	0.0162138434132916
Merged-chr1-179803131-3	chr1	179803036	179803236	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026375, intron 1 of 35)	CpG	879.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	5.10545067735893	5.05576175229966	4.97792456963978	4.80710334074369	5.07405544062164	4.9329088127483	4.56535987969634	4.86902034651592	-0.195964508493174	0.562075607288338	0.805362233049029
Merged-chr19-29420177-4	chr19	29420079	29420279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 1 of 5)	L1MB7|LINE|L1	9260.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	6.81751733642489	6.98251023644138	7.17167088527293	6.92485060823625	6.95095100213614	6.79881801742112	6.79801191132113	6.5661697994277	-0.258487600271563	0.211394208301424	0.516008044030918
Merged-chr8-106155302-4	chr8	106155208	106155408	+	960.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 2 of 5)	intron (NM_001357319, intron 2 of 5)	4954.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	4.98638926951264	5.01519180773494	5.1154070357445	5.24145517781467	5.00556777324297	4.58397636692322	4.70439547769324	4.878509244783	-0.569684398908439	0.0874354920608247	0.322502726855605
Merged-chr6-86790617-3	chr6	86790528	86790728	+	807.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013471, intron 1 of 12)	intron (NM_013471, intron 1 of 12)	2956.0	NM_013471	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	4.19117210849037	4.19251852262141	3.98337156724568	4.51355157075221	3.36635799255319	3.40347550364902	3.197918524703	3.35637490695174	-3.0952794339885	1.34422824439012e-07	5.60848899223003e-06
Merged-chr4-98202390-4	chr4	98202257	98202457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	180908.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	5.38488240316105	5.65622824736726	5.58102125125194	5.59934389063502	5.44930790353181	5.33418825970906	5.67499643287489	5.32039625601054	-0.190330018138744	0.492391125697262	0.763454548021117
Merged-chr6-137566056-3	chr6	137565921	137566121	+	727.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	4988.0	NM_001271595	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	3.08273940673117	2.97753670536468	3.13980766531115	3.40531835877679	2.81787214277223	2.86086364475859	2.95196842547916	3.08152729099784	-1.0293238738893	0.0961297562419209	0.33977653786591
Merged-chr2-124705096-4	chr2	124705005	124705205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51524.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	7.04621741146989	7.29816847479109	7.25722017400359	6.91858064693593	6.72481662825045	6.89751183347512	7.16919825829316	6.61763355980509	-0.369527103180501	0.093502510365351	0.334459781159622
Merged-chr13-43769108-4	chr13	43769005	43769205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-16007.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	7.2733025642066	7.2869947811878	7.59415067660087	7.35391101847734	7.32602524499916	7.1514888116215	7.6445628524655	6.91283704849847	-0.123879550407968	0.567578128031269	0.808307057069209
Merged-chr11-89017988-3	chr11	89017895	89018095	+	831.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009546, exon 9 of 9)	3' UTR (NM_009546, exon 9 of 9)	18592.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	3.19846475172956	3.26492355889855	3.08048642889381	2.85720570050841	3.20583898062762	3.42235828116524	2.79962164343008	3.07893702776998	0.159235247464886	0.796571489145881	0.921248529976191
Merged-chr11-62185129-3	chr11	62185028	62185228	+	979.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029936, intron 10 of 12)	intron (NM_001029936, intron 10 of 12)	-63856.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	4.0422259373528	4.18572805724025	4.28395727161337	4.23232159546705	3.61172287653608	3.68521841129903	3.42193620345786	3.49925394970746	-1.91226297369378	8.611725819621e-05	0.00179127420255641
Merged-chr4-127041412-4	chr4	127041301	127041501	+	825.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	19753.0	NM_026670	68310.0	Mm.273806	NM_026670	ENSMUSG00000043872	Zmym1	5830412B09Rik|AW209050	zinc finger, MYM domain containing 1	protein-coding	4.06527818679692	3.81432471250281	3.71248376771659	3.51925210396765	4.14481903779998	3.94535058160732	4.17198109058608	3.87357506280823	0.74323935982322	0.104417017960323	0.355318457252617
Merged-chr2-30626182-4	chr2	30626077	30626277	+	916.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	31133.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	4.63303225143414	4.53866598617534	4.10000547303217	3.87697449243354	4.34885761540847	4.32575792812474	3.92255792347433	4.28647791676425	-0.198738534302946	0.663055006217203	0.860369925941743
Merged-chr4-32564567-4	chr4	32564478	32564678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 3 of 4)	intron (NM_001109661, intron 3 of 4)	7084.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	8.18803393513624	7.82241515728128	8.88208888133723	8.55793876941945	7.7963452991122	7.32384492632581	7.90583883489432	7.72135514232567	-0.920610113022592	0.00019616062082424	0.00357829749606576
Merged-chr14-75131088-4	chr14	75130995	75131195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027581)	promoter-TSS (NM_027581)	-28.0	NM_001247984	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	7.2466822353726	7.42935338893041	6.84661914165521	7.04742690967178	7.53250699947462	7.370083921794	7.34351034346778	6.94107503654193	0.216726152771041	0.329504550607599	0.640831837145777
Merged-chr4-133931556-4	chr4	133931449	133931649	+	894.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	36442.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	5.45649809431718	5.37879259937911	4.71759946212774	4.94498724883029	4.809083293404	4.72128106031403	4.61024949365632	4.79543976051192	-0.825431430106998	0.0227365106111759	0.13930981224007
Merged-chr16-76337107-4	chr16	76337020	76337220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358238, intron 2 of 3)	intron (NM_001358238, intron 2 of 3)	35929.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	8.19591524348185	7.99255198012662	7.80223250402424	8.19185779467813	8.18678120323184	8.02698633376469	8.06162700917271	8.03665909692692	0.0272656144858745	0.873500605962419	0.952619493264257
Merged-chr13-35380793-3	chr13	35380702	35380902	+	934.488892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-168754.0	NR_126478	75543.0	Mm.489052	NR_126478	ENSMUSG00000113770	1700019C18Rik	-	RIKEN cDNA 1700019C18 gene	ncRNA	4.77729218373003	4.37821696034304	4.25087251882029	4.64380119688852	3.03251582513993	3.40142404802649	3.26585308659151	3.50154071627737	-4.87552068935802	1.20125349573917e-09	7.62747748199985e-08
Merged-chr11-53707311-4	chr11	53707208	53707408	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009012)	promoter-TSS (NM_009012)	11.0	NM_009012	19360.0	Mm.4888	NM_009012	ENSMUSG00000020380	Rad50	Mrell|Rad50l	RAD50 double strand break repair protein	protein-coding	5.80802304686732	5.27120907338028	4.94654816808499	5.32209485518399	5.19717488330791	5.59577047361031	5.42229048049612	5.52643065125451	0.117160295002413	0.717361216942173	0.886969736012834
Merged-chr13-34711637-4	chr13	34711546	34711746	+	946.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27996.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	4.40151228890333	4.9110505234794	4.20915839276847	4.56162111929043	4.52969121091528	4.16995855368932	4.66072021139811	4.68002985090388	-0.0556684825193451	0.890978658406658	0.959254414522706
Merged-chr6-49269401-4	chr6	49269300	49269500	+	902.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5348.0	NM_001362188	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	4.77357265647067	4.55806071910838	4.35763437813708	4.47190966367187	4.29519818127394	4.23778559076398	4.38196902180079	4.44153418977388	-0.474102339310652	0.209933582046204	0.514484230514723
Merged-chr15-13384948-3	chr15	13384857	13385057	+	800.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-211282.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	3.83711841214792	3.44693043626087	4.02024988568271	4.19416837347913	3.5569060821082	3.55520341648516	3.914764007364	3.67928419679804	-0.673583568804354	0.191729663937682	0.491168823085127
Merged-chr9-75437177-4	chr9	75437118	75437318	+	761.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4306.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	3.43352616974623	3.41352639610041	3.43397154066278	3.26609473478321	3.58767011254607	3.60749179289161	3.4774020427942	3.8295592794219	0.8321573585628	0.0901536951576992	0.327810749114653
Merged-chr7-34389267-2	chr7	34389167	34389367	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025948, intron 1 of 10)	CpG	438.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	5.54486419115487	5.33315426504831	5.54583380959776	5.40901517300355	5.2823797936359	4.99415063008655	5.29780367998068	5.5162784021506	-0.298577461363491	0.307697536680322	0.620055573392465
Merged-chr7-81214147-4	chr7	81214008	81214208	+	956.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 1 of 21)	CpG	304.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	4.42616491533429	4.28333094196882	4.67321499583978	4.57922171800122	4.40184701584968	4.41394878730016	4.49350535233432	5.20709209659526	0.377784451154016	0.359025627419882	0.664977495033042
Merged-chr5-99979093-4	chr5	99979005	99979205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077267)	promoter-TSS (NM_001077267)	-167.0	NM_001077267	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	8.11671420201359	8.39529593248498	7.96889309675266	7.95073638606953	8.32409340033527	8.49612935080622	8.42763627330628	8.12537304219394	0.295026368406483	0.103614975368789	0.353695137033082
Merged-chr7-28268006-3	chr7	28267955	28268155	+	847.9833369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198425, exon 1 of 1)	exon (NM_198425, exon 1 of 1)	174.0	NM_198425	386655.0	Mm.258201	NM_198425	ENSMUSG00000046058	Eid2	Cri2|EID-2	EP300 interacting inhibitor of differentiation 2	protein-coding	2.98783607482145	2.93470157504811	3.04469110534543	3.1643306204092	2.80574335520459	2.76513917209616	2.72635824530622	2.92767979672463	-1.06156939830628	0.0896611897016832	0.326946404804104
Merged-chr4-152131060-3	chr4	152130952	152131152	+	938.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_207691, exon 4 of 10)	exon (NM_207691, exon 4 of 10)	-2127.0	NM_019585	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	3.77451015086426	3.97682646278316	4.06957431576404	3.81897336256499	3.70368352751215	3.89532083326394	3.91400979851956	4.15161243959071	0.027808878078521	0.950523697374761	0.982292002489047
Merged-chr15-8714121-3	chr15	8714023	8714223	+	794.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3316.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	3.11278156034357	3.01726803597243	2.9649798746155	2.90003649660442	3.92778519315664	3.70693303382054	3.83263924518991	3.24563146812221	2.56444809457154	5.85305048694798e-06	0.000170673609426657
Merged-chr11-115133983-4	chr11	115133876	115134076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145634)	promoter-TSS (NM_145634)	16.0	NM_001347648	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	6.80236906605527	6.85332364730266	6.5474273588254	6.633937882088	6.55790248814179	6.70722066661698	6.79588904707898	6.63908430540452	-0.055722939535	0.788319242389249	0.918087641460787
Merged-chr6-13603329-4	chr6	13603205	13603405	+	964.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028990, exon 2 of 5)	exon (NM_028990, exon 2 of 5)	4793.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	4.71809910768259	5.0639272346619	4.7934160563777	4.47910791789879	4.74199040687546	5.16337503791811	4.24714761505442	4.46259827323415	-0.16011087193816	0.696676177687529	0.87731920902324
Merged-chr5-118638148-3	chr5	118638024	118638224	+	864.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	77405.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	4.26697725386347	4.36954149577453	4.31047003522816	4.37159736563538	4.15170357688136	4.39476181692695	4.15928177842813	3.73604924783641	-0.506555117005392	0.2291097343744	0.538010661957944
Merged-chr6-129349641-4	chr6	129349536	129349736	+	857.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177686)	promoter-TSS (NM_177686)	-608.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	4.18209846344994	4.2895492707784	4.13308552981233	4.00659231091557	4.49468029163238	4.69172476806682	4.42536685133504	4.22795640166804	0.775656137008991	0.0464404587833566	0.221399406265128
Merged-chr19-6271457-4	chr19	6271345	6271545	+	859.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5451.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	4.46717628240703	4.09291425150182	4.04142573140364	4.24007669949943	3.90588149826662	3.88227333128454	4.25303813827219	4.39050028330666	-0.247875089266797	0.569264167597128	0.809366519988776
Merged-chr16-23984874-4	chr16	23984758	23984958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	-3575.0	NM_001348026	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	5.6837439652896	5.88540674419732	5.32039147142274	5.57409831226214	5.36062557673351	5.56024857261013	5.47403585188452	5.65614126641132	-0.208130833503459	0.463314617395742	0.744647770407916
Merged-chr4-106387015-3	chr4	106386906	106387106	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183225, intron 32 of 67)	L2a|LINE|L2	70793.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	4.93375884528197	4.84059873502765	5.02496936953397	5.26278135048292	4.06330821586896	4.14928139655017	4.46963016831929	4.01710433730795	-1.94807245008798	9.29591611293564e-07	3.28211315973535e-05
Merged-chr11-50244044-4	chr11	50243964	50244164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5532.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	6.08254233714224	6.50370801670543	6.2639362967505	6.26945398086542	6.24850581872604	5.86320134512998	6.35550698916689	6.18253619915398	-0.167024028843697	0.491674044743705	0.763153828009839
Merged-chr11-18957993-4	chr11	18957894	18958094	+	764.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010789, intron 7 of 11)	intron (NM_010789, intron 7 of 11)	60975.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	3.94103093772274	3.99695861047952	3.89046077519155	4.22619146907168	4.13782367480368	3.78114968454025	4.0658906115611	3.98842097243262	-0.0754301633075634	0.863692872449783	0.948777991323093
Merged-chr5-114824349-4	chr5	114824299	114824499	+	817.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181075)	promoter-TSS (NM_181075)	-931.0	NM_181075	330173.0	Mm.482205	NM_181075	ENSMUSG00000092486	2610524H06Rik	-	RIKEN cDNA 2610524H06 gene	protein-coding	3.6745419488075	4.07621835644323	3.67502374022714	3.60950852296176	3.80744111834419	3.90715025342957	3.82238355591785	4.22862230179885	0.513541013734326	0.27448225198401	0.586267733352434
Merged-chr1-52653558-4	chr1	52653471	52653671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MusHAL1|LINE|L1	22866.0	NM_001142647	227094.0	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	6.63826291612158	6.83458626325921	7.09266718788361	6.65778130993575	6.76951384526351	7.02250395486169	6.75600015261516	6.86828670598748	0.062053185476904	0.770925029971076	0.910337619434211
Merged-chr5-107960964-4	chr5	107960902	107961102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	ORR1D2|LTR|ERVL-MaLR	26075.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	6.77859103504621	6.45996390321463	6.82012959949433	6.84109262727343	6.60867251796142	6.35688823927673	6.68962009423083	6.37623362074645	-0.31095482148186	0.160623127729178	0.448845540540011
Merged-chr18-34886153-4	chr18	34886058	34886258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24951.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	5.38798574519457	5.1391797738545	4.97647285370428	5.21181419996613	5.31211026754256	5.11588025211338	5.15812470270165	5.30126576095923	0.0764807562948625	0.798026002150827	0.921928567316738
Merged-chr3-95625314-4	chr3	95625202	95625402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001026212, intron 1 of 2)	intron (NM_001026212, intron 1 of 2)	322.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	8.47452476041143	8.52984280536422	8.26467140362224	8.55463018711471	8.3860668822267	8.57657944341764	8.58195353198198	8.41437325208735	0.0311648659270437	0.843185671741828	0.940459539910433
Merged-chr3-142560557-4	chr3	142560519	142560719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001289493, exon 1 of 11)	5' UTR (NM_001289493, exon 1 of 11)	263.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	7.30804451953349	7.37580857207692	7.45859598794192	7.04006727807845	6.83854477117173	6.96612329154522	6.85413937832836	6.70589805658181	-0.621922217582871	0.00217828994769073	0.0249730860327117
Merged-chr14-122463815-7	chr14	122463664	122463864	+	950.595215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022987, intron 1 of 1)	CpG	1894.0	NM_022987	65100.0	Mm.390761	NM_022987	ENSMUSG00000041703	Zic5	1700049L20Rik|Opr	zinc finger protein of the cerebellum 5	protein-coding	3.45140053023633	3.7023117529381	4.20155782721739	3.59841372323958	3.82958906184856	3.76000836372915	3.62592563199888	4.23585388540694	0.336672136946157	0.515543849692577	0.777570734584958
Merged-chr10-40141659-2	chr10	40141559	40141759	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	595.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	4.56783146689214	4.84412201172927	4.90275009459918	4.72275944697646	5.34364157066535	5.14837968208382	5.22820139193318	5.10320659741271	0.880337538540949	0.00490328824693972	0.0468848944289256
Merged-chr16-91826000-4	chr16	91825919	91826119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 14 of 15)	intron (NM_001110276, intron 14 of 15)	96648.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	6.22815569951857	6.41574384410442	6.72010972919801	6.99931459128756	6.45366881388586	6.23185946252374	6.58417636224338	6.50214716399746	-0.278389198759055	0.277578229204994	0.589700641340894
Merged-chr19-24265197-4	chr19	24265123	24265323	+	800.75415	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008044, intron 4 of 4)	B3A|SINE|B2	15363.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	4.22451617822362	4.27667969662644	4.77974854363268	3.96533062877305	4.50794431387892	4.80702757780555	5.05961513396231	4.81061535290794	1.04587471701086	0.0109105949278455	0.0840027297316508
Merged-chr7-36720224-4	chr7	36720113	36720313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172298, intron 1 of 1)	intron (NM_172298, intron 1 of 1)	22095.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	5.19507757900634	5.35020720453411	5.02943619787927	5.43894992518179	5.33551078462032	5.16973931208537	5.25992438194303	4.51085222386432	-0.291325877334008	0.406551697243203	0.702991527987415
Merged-chr1-134784632-4	chr1	134784542	134784742	+	780.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081307, intron 18 of 23)	intron (NM_001081307, intron 18 of 23)	19079.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	3.39164789722835	3.71851935327621	3.6277671225085	3.77203756428004	3.98204749502265	3.89939518413543	3.50221808411842	3.67913571690007	0.426979583207617	0.391575351818985	0.691302692770561
Merged-chr8-122465148-4	chr8	122465053	122465253	+	953.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033142)	TTS (NM_001033142)	-4461.0	NM_013914	30927.0	Mm.103673	NM_013914	ENSMUSG00000006587	Snai3	AI643946|Smuc|Zfp293	snail family zinc finger 3	protein-coding	4.35349747900485	4.44602431665059	4.88461255540335	4.69668865807423	4.8034651638623	5.09561152440591	5.60145854837367	5.14325908581045	1.13164567400932	0.00259042734242184	0.028493900140047
Merged-chr6-89455569-3	chr6	89455476	89455676	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-92963.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	3.50532077777286	3.27811416381599	4.02424580784078	3.8521796294971	3.57067993969352	3.67990021134144	3.43401339498875	3.50393750259448	-0.471112244238971	0.379827019258169	0.682282195090949
Merged-chr16-20516970-4	chr16	20516880	20517080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347176)	promoter-TSS (NM_001347176)	-6.0	NM_001347176	13544.0	Mm.247259	NM_007889	ENSMUSG00000003233	Dvl3	b2b2866Clo	dishevelled segment polarity protein 3	protein-coding	7.51945645068464	7.59431998526019	7.45613482627403	7.77488500954178	7.32627654957844	7.01013544579816	7.61134581436509	7.1768894746292	-0.394592187598024	0.0521070182669625	0.237660223838532
Merged-chr19-36083727-4	chr19	36083627	36083827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019428)	promoter-TSS (NM_019428)	11.0	NM_019428	54364.0	Mm.277891	NM_019428	ENSMUSG00000024800	Rpp30	Rnasep2|TSG15	ribonuclease P/MRP 30 subunit	protein-coding	6.46887090579023	6.16254281418197	6.45385624376189	6.45900618584094	5.94890186510448	5.72547805804729	6.48386896350674	6.41628757343557	-0.321981724910358	0.227448742367954	0.536115043419104
Merged-chr3-121694111-4	chr3	121694011	121694211	+	911.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23348.0	NM_001033814	619318.0	Mm.371258	NM_001033814	ENSMUSG00000074248	4930432M17Rik	-	RIKEN cDNA 4930432M17 gene	protein-coding	4.31226972410728	4.79302345602327	4.57279030258038	4.56708880979782	4.42829341536358	4.48906502412589	4.42944059086911	4.56981924994279	-0.22028791088058	0.549256429534197	0.797926160923547
Merged-chr13-64126138-4	chr13	64126030	64126230	+	804.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001321, intron 1 of 11)	MTD|LTR|ERVL-MaLR	3200.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	3.63256510689646	3.450698508142	4.04339754654972	3.89025151196328	4.1478628836051	4.00946338998333	4.70820997583026	4.81479248608768	1.7221420899401	0.000654765201222419	0.00956992448825679
Merged-chr9-120020394-3	chr9	120020286	120020486	+	964.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011724, intron 1 of 2)	intron (NM_011724, intron 1 of 2)	3212.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	3.82154096732388	3.43830323100937	3.5019960556845	3.6374360334276	3.80439548576746	3.94260976056226	3.70852571932031	3.61572351914461	0.499782268092393	0.293956781487368	0.606364889537559
Merged-chr3-129634551-3	chr3	129634427	129634627	+	850.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_130450, exon 5 of 5)	3' UTR (NM_130450, exon 5 of 5)	90559.0	NM_001310737	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	3.855681764756	3.70683902661535	4.39377057710638	4.07939743329043	3.51233001106572	3.97897026050783	3.98431509435043	3.50306725221637	-0.770132171870104	0.131940764555349	0.404366487848663
Merged-chr2-30929080-4	chr2	30928976	30929176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23925.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	6.59642260397025	6.72707375983841	6.08473452821434	6.30834198998747	6.34946334752717	6.57857735206473	6.36992143378093	6.26879730688251	-0.0830509002771126	0.733506104356753	0.894503508421563
Merged-chr8-56063367-4	chr8	56063266	56063466	+	924.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080438, intron 5 of 9)	intron (NM_080438, intron 5 of 9)	122541.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	4.50354948292982	4.38464866561809	4.50426495706954	4.72784193931436	4.26409327542621	4.41191293268334	4.35734106273687	4.61714266004065	-0.312209359165707	0.408982533125398	0.70476365964588
Merged-chr6-142343783-3	chr6	142343704	142343904	+	715.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1893.0	NM_183165	232491.0	Mm.490474	NM_183165	ENSMUSG00000041671	Pyroxd1	-	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding	3.69997438593064	3.6964054143446	3.53118407908892	3.72769856933325	3.80591281549769	4.01765350594518	3.51856980989282	3.79995498209845	0.372150918332163	0.429874793080547	0.720635978674715
Merged-chr3-15203020-3	chr3	15202917	15203117	+	944.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	129285.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	4.02487861158064	3.69527355184528	3.84956195865888	3.87327296968268	3.42397809864368	3.70604762583011	3.684433842334	3.52765490026851	-0.872304503002371	0.0692867420050856	0.281525824509847
Merged-chr4-114925382-4	chr4	114925230	114925430	+	871.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_015758, exon 1 of 1)	exon (NM_015758, exon 1 of 1)	683.0	NM_015758	30923.0	Mm.377122	NM_015758	ENSMUSG00000044518	Foxe3	FREAC8|dyl|rct	forkhead box E3	protein-coding	3.56217156044768	3.74864403669285	3.90839845849125	3.84969425143311	3.5931737255844	3.42619321738907	3.70780663839918	3.66966811600503	-0.543222667131007	0.25976371605532	0.571563806638815
Merged-chr13-64402110-4	chr13	64401997	64402197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER68-int|LTR|ERVL	-30456.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	7.29769873148514	6.99850011539619	7.62776213796683	7.71205372229043	6.71132580391327	6.43476954131838	7.14566179476325	7.17675523522589	-0.73854106738585	0.00402972073883861	0.0402796647198137
Merged-chr1-173762686-1	chr1	173762586	173762786	+	662.0	f0_c57.idr	intron (NM_008329, intron 1 of 8)	intron (NM_008329, intron 1 of 8)	4233.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	2.37798666716091	2.32582500439798	2.37817897944886	2.04655995784575	3.07573223397036	3.2950624650574	2.99902395278667	3.17090679514309	7.06539493530388	5.09215513746809e-12	4.87825720766947e-10
Merged-chr16-76265952-2	chr16	76265852	76266052	+	762.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	107097.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	2.58510017920662	2.83785836518292	2.99429746149453	2.95829425017275	2.84422150427798	3.04318720976044	3.03944201683933	3.10468089930196	0.639929977400262	0.312950553167108	0.624873399429149
Merged-chr10-127666180-2	chr10	127666080	127666280	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045171)	promoter-TSS (NR_045171)	523.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	3.22760070181118	3.3338911885299	3.04776725424508	2.88541571661019	3.17314358349111	3.28280036196281	3.09957119367146	3.16900536641855	0.215690817007495	0.707142781808756	0.882396225404233
Merged-chr2-32601608-3	chr2	32601507	32601707	+	853.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025311, intron 1 of 4)	intron (NM_001025311, intron 1 of 4)	1898.0	NM_001025311	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	3.49067774105199	3.58850455498193	3.21549857785068	3.0182872915612	3.23891539433784	3.12788778490448	3.37405245928236	3.27381504230719	-0.307384515775034	0.592539762726182	0.822240801417361
Merged-chr17-78400731-4	chr17	78400645	78400845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001285946, exon 5 of 7)	exon (NM_001285946, exon 5 of 7)	17407.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	5.67915410324056	5.57887370743807	6.0497529141964	6.37104712023201	5.58099306963146	5.80309768849474	5.77810221064066	6.02525208487346	-0.283760591894091	0.347404424227729	0.655495162551837
Merged-chr1-46852859-4	chr1	46852757	46852957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356416, intron 1 of 10)	CpG	761.0	NM_001356416	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	6.73791671271616	6.27558897702215	6.78124513619408	6.61353878194372	6.75545596774573	6.53631123127196	6.93764148054654	6.67584961940701	0.178789386940086	0.425554516321197	0.717003856394132
Merged-chr4-136146168-8	chr4	136146039	136146239	+	996.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008321)	TTS (NM_008321)	2317.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	5.44463094768501	5.39205541126668	5.63247136955922	5.69011164434447	5.72436432329363	5.335080242707	5.29873489553032	5.49800427806449	-0.113997890657953	0.691840318525407	0.87467626526963
Merged-chr3-84942393-3	chr3	84942280	84942480	+	923.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177774, intron 3 of 12)	intron (NM_001177774, intron 3 of 12)	-9831.0	NM_080428	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	3.77951261474534	3.85371297934249	4.063231236252	3.9110848062994	3.80182571584607	3.38705637659429	3.86514288323926	4.06062758426275	-0.293396416283394	0.544641852245112	0.795384948727017
Merged-chr9-53669945-4	chr9	53669801	53670001	+	836.270813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-2394.0	NM_027807	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	3.1088948757807	3.0775106725757	3.55703766464627	3.36405105758114	3.40468365215816	3.2854733501183	3.33949961779375	3.40491999385567	0.238289331126111	0.663090248193158	0.860384285982478
Merged-chr17-88509293-4	chr17	88509203	88509403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20821.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	8.57609460600639	8.79785526764692	8.72106621689891	8.59863008915894	8.22482379695727	8.46576547286402	8.34953262266171	8.26502128754523	-0.440511805527813	0.00435945303869655	0.0428711671513377
Merged-chr18-65789170-1	chr18	65789070	65789270	+	680.0	f1_c57bl6.idr	Intergenic	Intergenic	-11408.0	NM_025468	66286.0	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	3.10184453264449	3.07082857021773	3.10217360107101	3.55362447092225	3.42462640290448	3.34090624222035	3.27629608766906	3.59325196599611	0.60453230322241	0.304013315267082	0.616716933635306
Merged-chr2-29869892-2	chr2	29869792	29869992	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207298, intron 1 of 11)	intron (NM_207298, intron 1 of 11)	398.0	NM_207298	99151.0	Mm.296336	NM_207298	ENSMUSG00000039787	Cercam	2600006K01Rik|AL024097|Ceecam1	cerebral endothelial cell adhesion molecule	protein-coding	2.96425194140455	3.02976224738152	3.0862207310017	3.25926549944221	2.7803455372825	3.07270988269815	3.13062845174948	3.02533791500853	-0.392069814277867	0.514835819660199	0.777276944122371
Merged-chr1-59608591-4	chr1	59608494	59608694	+	967.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013771, intron 13 of 19)	intron (NM_001013771, intron 13 of 19)	62240.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	5.24762725542734	4.86995393670916	4.29416368883463	4.58663185833616	5.22647597273125	4.48214567407445	5.11027836573685	5.07234443549827	0.427287649458152	0.295965531035614	0.607840340861675
Merged-chr6-86671027-4	chr6	86670908	86671108	+	927.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1849.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	4.88941884744174	4.48357983936023	4.10854338579353	4.63195108840702	4.61361790492727	4.71027723780788	4.29815541041395	4.49375413314423	-0.0486944888667479	0.903228100177256	0.96418471996456
Merged-chr9-78553165-3	chr9	78553048	78553248	+	905.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172773, intron 8 of 10)	intron (NM_172773, intron 8 of 10)	34897.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	3.51058502279975	3.4715077017534	3.40117407531419	3.583802122102	3.50137170109311	3.32748771518289	3.27026999463013	3.61006234727268	-0.2075373899222	0.684853862903839	0.870922734353662
Merged-chr10-75484883-3	chr10	75484784	75484984	+	976.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32497.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	4.11086238475345	4.22055501354866	3.57313170716066	4.14116727399341	3.53644712082958	3.99203810121627	4.25615798340371	3.96944385547714	-0.208645845710193	0.677509979126518	0.867729370835336
Merged-chr9-75049296-4	chr9	75049209	75049409	+	882.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357880, intron 2 of 3)	intron (NM_001357880, intron 2 of 3)	11577.0	NM_021548	59046.0	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	4.25127786239946	3.86726056014237	4.3725270268379	4.17119041448336	4.07470755270691	4.09301540578882	4.27361637189627	3.91405329478212	-0.205120067441838	0.6300210845549	0.842559648166699
Merged-chr2-131196723-4	chr2	131196595	131196795	+	936.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111075, intron 13 of 14)	intron (NM_001111075, intron 13 of 14)	9747.0	NM_001111075	12531.0	Mm.38444	NM_023117	ENSMUSG00000027330	Cdc25b	AI604853	cell division cycle 25B	protein-coding	4.36566285789857	4.39162018565912	4.08575526859638	4.18781384750933	4.29407158927123	4.21091642757596	4.42699043740327	4.52110377784091	0.258746204515558	0.504637190406738	0.770888948942188
Merged-chr4-83327624-3	chr4	83327489	83327689	+	881.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3400.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	3.63889850158695	3.60318686715124	3.5833633405175	3.75011410476483	3.9139644920683	3.75635579191017	3.62536058503961	3.83952766168853	0.416862758836308	0.367821641561445	0.672363867194897
Merged-chr8-72135778-4	chr8	72135665	72135865	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001491, intron 1 of 7)	CpG	473.0	NM_001001491	326618.0	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	4.42879361082143	4.755209996487	4.51891187117934	4.37084514818933	4.95044140059598	4.73550850170538	4.73234747359346	4.6394417609181	0.557480111324336	0.115987944432451	0.376775552060852
Merged-chr16-32814604-4	chr16	32814489	32814689	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4143.0	NM_001256309	381043.0	Mm.303864	NM_001256309	ENSMUSG00000094430	Smbd1	Gm1743|Gm933	somatomedin B domain containing 1	protein-coding	5.11427067637555	5.66108450309289	4.89505110712836	4.91474005398375	5.31047175008061	5.1502839338239	5.18672957263951	5.32796886412895	0.122190617837219	0.71872137841429	0.887667216205288
Merged-chr10-84573849-4	chr10	84573749	84573949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3098.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	6.1798824897322	6.15381942882053	5.92080452588542	6.54326647065429	5.91305391364211	6.09841286106386	6.50319357759343	5.89232668518166	-0.173638272511714	0.5313429961341	0.787188325982497
Merged-chr19-32330425-4	chr19	32330302	32330502	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	18914.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	5.65329487689859	5.62127732736783	6.00201170576761	6.25076800928794	5.20887116762942	5.16327762341026	5.18384460850055	5.30777737807623	-1.21938609916158	5.31836093973063e-05	0.00119455857787658
Merged-chr11-116844130-2	chr11	116844030	116844230	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033398)	promoter-TSS (NM_033398)	615.0	NM_028865	74319.0	Mm.429312	NM_028865	ENSMUSG00000090266	Mettl23	1110005A03Rik|1500035B17Rik|4933424L15Rik	methyltransferase like 23	protein-coding	3.49276301609281	3.79105494782224	3.19500945500698	3.3409545907414	3.36836739467618	3.37306190972515	3.36932871546161	3.54341521052825	-0.196323947535463	0.714795219803439	0.886003030420421
Merged-chr2-155696392-4	chr2	155696263	155696463	+	937.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3979.0	NM_001163452	56407.0	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	3.85763653482987	4.07912113750396	4.41447402335422	3.86233966907922	3.84469307608659	4.31475851426844	3.61197893696227	3.68511588359015	-0.479627207217217	0.334185682698193	0.644805241742718
Merged-chr10-71347748-4	chr10	71347655	71347855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347191)	promoter-TSS (NM_001347191)	-8.0	NM_001347191	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	7.77592453847883	8.10408244675779	7.84825454595617	8.16552085936656	8.10213353156335	8.07840342490178	8.0902516620558	8.02799734129175	0.104265105613414	0.543253317609642	0.794367638237739
Merged-chr13-102695482-7	chr13	102695392	102695592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360519, intron 1 of 2)	intron (NM_001360519, intron 1 of 2)	1934.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	6.18617378624346	5.62838032358682	6.33307293857629	6.00544118952896	6.07771603977011	6.30344626990729	5.9240479589314	6.45896044158404	0.225939574285427	0.406617885195228	0.703049240732416
Merged-chr14-17433140-4	chr14	17433027	17433227	+	858.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-227833.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	3.67007905564492	3.59353669702345	3.97530951334219	3.95791955548089	3.99517485922315	3.60266370296111	4.001631089887	3.92692201503137	0.22186768807767	0.637740588770716	0.846929687079943
Merged-chr1-63113716-7	chr1	63113644	63113844	+	989.595215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045915)	promoter-TSS (NR_045915)	523.0	NM_001081436	227195.0	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584	INO80 complex subunit D	protein-coding	4.61509965582589	4.56329175841182	4.57336016512236	4.60115812499213	4.77453902703028	4.70664392671866	4.98348764857687	5.09344169159331	0.639899786594276	0.0578985882230164	0.252589881666118
Merged-chr10-128303304-4	chr10	128303198	128303398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252327)	promoter-TSS (NM_001252327)	-37.0	NM_133992	103135.0	Mm.244183	NM_133992	ENSMUSG00000005682	Pan2	1200014O24Rik|AI047843|AW742773|Usp52|mKIAA0710	PAN2 poly(A) specific ribonuclease subunit	protein-coding	7.4864241935818	8.05139371127123	6.95804510985202	7.22983522829737	7.87016859272428	7.62709230360403	7.54966727077064	7.38489336518398	0.165005758761871	0.522181359118112	0.781898917886825
Merged-chr5-99297333-4	chr5	99297229	99297429	+	927.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_030692)	TTS (NR_030692)	-44402.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.5215790770231	4.66113041636027	4.60312658753039	5.01820974661138	4.4980351618737	4.52026755386811	4.32496309839558	4.43326522136215	-0.640490953218876	0.089082661183202	0.325647305053022
Merged-chr9-55589240-1	chr9	55589140	55589340	+	582.0	f0_balb.idr	intron (NM_001357652, intron 28 of 32)	intron (NM_001357652, intron 28 of 32)	-32460.0	NM_001357653	244891.0	Mm.86588	NM_175536	ENSMUSG00000034007	Scaper	C430017I08|D530014O03Rik|Zfp291	S phase cyclin A-associated protein in the ER	protein-coding	2.82716058677742	2.93009435361134	2.88786098185406	3.00388800336231	2.36299712093239	2.87149800718263	2.68946147589282	2.7629285994399	-1.15473077385161	0.109407736116531	0.365262551996626
Merged-chr2-145824970-4	chr2	145824869	145825069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	38853.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	6.56792565537905	6.71952375547367	6.56908297286038	6.78055804028603	6.77637988842539	6.84220217277174	7.00233756298416	6.83396464006378	0.268419448238616	0.183214165781304	0.48006630245343
Merged-chr19-53529777-4	chr19	53529650	53529850	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085390, intron 1 of 3)	intron (NM_001085390, intron 1 of 3)	432.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	5.28313868685157	5.3414429647991	5.39299843617732	5.33189425423328	4.74400753762004	4.94369550007539	4.82382420540093	4.92103289193429	-0.936659518444395	0.00217312037040036	0.0249243530204201
Merged-chr6-49367742-4	chr6	49367635	49367835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172216)	promoter-TSS (NM_001172216)	-4.0	NM_001172216	231946.0	Mm.35199	NM_172727	ENSMUSG00000047115	Fam221a	D330028D13Rik	family with sequence similarity 221, member A	protein-coding	7.11847343595211	7.08394033563311	7.09569042161761	7.29616507191716	7.38722600860582	7.44221339986222	7.3409017669004	7.2065752060846	0.252393933366183	0.169548793296696	0.462210400538703
Merged-chr11-110698623-4	chr11	110698522	110698722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	219282.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	7.17178470766308	7.0921709096513	6.82766024709191	6.6040091682728	6.90203478626597	6.99049722568751	6.9396297451854	7.10163399568271	0.0739268081098057	0.734475253972161	0.895054085885471
Merged-chr6-55203357-4	chr6	55203273	55203473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177883)	promoter-TSS (NM_177883)	-10.0	NM_177883	330323.0	Mm.268997	NM_177883	ENSMUSG00000038022	Mindy4	C330043M08Rik|Fam188b|Gm1406	MINDY lysine 48 deubiquitinase 4	protein-coding	6.19583348225349	5.64216211185003	6.11841645216102	6.00331025544194	5.97933699747301	6.18895665484892	6.45126224238363	6.13411213071111	0.297793621862855	0.250328457345408	0.561407446697629
Merged-chr17-10765056-4	chr17	10764969	10765169	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	Lx7|LINE|L1	75122.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	4.69360652651386	4.63246421353584	4.80951951227593	5.00980666006021	4.73360775931904	4.86850204167047	4.82258636180004	4.87760925517805	0.0212294439532798	0.95008007594862	0.98220432130175
Merged-chr15-97881576-1	chr15	97881476	97881676	+	828.0	f0_balb.idr	intron (NM_009504, intron 3 of 9)	intron (NM_009504, intron 3 of 9)	26720.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	3.71811922734178	3.19706955493331	3.4763974279166	3.67897291614059	3.14945729952686	3.41880908148134	3.40847062886485	3.24136314702028	-0.817655838723971	0.138118429163973	0.41348972364832
Merged-chr7-38025076-4	chr7	38024992	38025192	+	885.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-5540.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	5.04575919278883	4.81024753858706	4.75546385759671	5.2662727367043	4.50803622895112	4.60477290593935	4.20566651495003	3.91843183760821	-1.42829118546139	0.000601593527784236	0.00895645800337882
Merged-chr8-92772409-3	chr8	92772382	92772582	+	880.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-54815.0	NM_008610	17390.0	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	3.44096746669805	3.30920649236167	3.49151633985014	3.43537855411722	3.14325866294088	3.13218070593672	3.01442844609505	3.38742167652132	-0.919627748343718	0.0973951673402437	0.341999446507374
Merged-chr4-136239838-4	chr4	136239737	136239937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008232, intron 17 of 24)	intron (NM_001008232, intron 17 of 24)	-8120.0	NM_011542	21401.0	Mm.112	NM_011542	ENSMUSG00000001604	Tcea3	S-II|SII-K1	transcription elongation factor A (SII), 3	protein-coding	6.24494294521404	6.38128968853647	5.68224508227849	5.93546904583685	6.15605318177717	6.09174194402202	5.95355449745283	6.12749391497105	0.0020492527628	0.993779061871999	0.997702270136287
Merged-chr15-98805452-3	chr15	98805336	98805536	+	864.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001013741, exon 2 of 2)	exon (NM_001013741, exon 2 of 2)	2489.0	NM_001013741	13199.0	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	3.2318820549721	3.61638382253552	3.63583758750609	3.15037503669382	3.62759649724166	3.64997710799001	3.40764710730502	3.58318279050084	0.507608706532296	0.338289291391311	0.647897039471065
Merged-chr7-101550863-4	chr7	101550761	101550961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4941.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	6.42399338691329	6.4513445096121	6.55676348155927	5.94527990041537	6.79954986166185	6.68459935779986	6.24593205733922	6.2929347512683	0.272683224384052	0.300557676222676	0.612477626586326
Merged-chr18-58536236-4	chr18	58536114	58536314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20026.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	6.55727403893254	6.67816098616245	6.6333024284643	6.66939654861695	6.04023363209546	6.25364946163204	6.02147783151557	6.22001485469293	-0.757732163629113	0.00048773071821603	0.00758095634700953
Merged-chr5-134520317-4	chr5	134520235	134520435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 3 of 15)	intron (NM_001039162, intron 3 of 15)	32099.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	5.69436073552755	6.24075142162457	5.74871862908963	5.92267528824652	6.03630672779118	5.81820226655836	6.15456358274709	6.08598224632643	0.166632540896103	0.522484601468765	0.781971587334536
Merged-chr2-30967005-4	chr2	30966906	30967106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144884, intron 2 of 4)	intron (NM_144884, intron 2 of 4)	912.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	6.00054674688723	5.89542103678726	5.62515828159516	5.50507781611903	5.91659829307834	5.93036105926831	5.82072320555877	5.62120417741383	0.119945453836427	0.658916500425005	0.858075830194168
Merged-chr3-87906788-4	chr3	87906689	87906889	+	986.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331052)	promoter-TSS (NM_001331052)	-61.0	NM_001331051	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	4.81117391877431	5.17892631122584	5.09885099029969	4.89246827335165	4.8552103909578	5.27138688761309	4.82866191501499	5.30192956559854	0.145846626178142	0.662636736508641	0.860115279097678
Merged-chr13-3805872-3	chr13	3805771	3805971	+	824.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1553.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	3.45508761002682	3.12433519391026	3.6900984897747	3.36052481947071	3.0802826014886	3.21336020483274	3.21906048329873	3.34613775909575	-0.748497731539072	0.1839083408718	0.481093979545859
Merged-chr4-40217986-4	chr4	40217882	40218082	+	796.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172689, intron 10 of 17)	B2_Mm1a|SINE|B2	21843.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	3.65707885252773	4.01600013189722	4.23188537359996	4.08288956635045	4.21540692757422	4.12467698236093	4.25363346849997	4.18635929892696	0.459183862417096	0.28186228404756	0.594006038272513
Merged-chr13-52252855-4	chr13	52252766	52252966	+	871.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	156125.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	4.41002899894846	4.25627633718635	4.04738460607477	3.99760478496391	4.59999963016597	4.27419836804265	4.2669710055826	4.14577201013292	0.407645430924664	0.322775040575869	0.634242618516723
Merged-chr6-108828457-4	chr6	108828339	108828539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138677)	promoter-TSS (NM_138677)	-202.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	9.57296959907617	9.51526432236812	9.77786119026958	9.82662269296485	9.5767877491326	9.62423530900873	9.88605943381325	9.43064316090159	-0.0510831293482141	0.752714699294653	0.90263119061095
Merged-chr12-16897412-3	chr12	16897313	16897513	+	927.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	MTC|LTR|ERVL-MaLR	2435.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	4.40190320040763	4.29624164877967	3.88574773000785	4.21426744077019	3.65699271011293	3.95353754579946	3.70251603268883	3.88353801648004	-1.15610934923676	0.0110401856083649	0.0846719224458251
Merged-chr6-29166407-4	chr6	29166307	29166507	+	979.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1683.0	NM_133925	68272.0	Mm.40802	NM_026650	ENSMUSG00000029701	Rbm28	2810480G15Rik|AI503051	RNA binding motif protein 28	protein-coding	4.61644226810445	5.45648868189433	5.26244257427316	5.07659621105013	4.98959404225432	5.31190039543451	5.59437454696516	5.0657583008545	0.219061529947168	0.539142535599694	0.791983989773924
Merged-chr1-125439416-4	chr1	125439287	125439487	+	826.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3660.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	4.05202645958316	3.8432511781077	4.00960233744415	3.98231581904875	3.58774651377849	3.45030503048684	3.90173151215928	3.76690496329972	-0.847018744012094	0.0722307690959264	0.288805410261709
Merged-chr2-11288622-4	chr2	11288525	11288725	+	970.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 15 of 17)	intron (NM_008859, intron 15 of 17)	-50864.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	5.12119685220036	4.52680941125222	4.99284662143808	4.77927065070459	5.04241912838947	4.68626303092003	5.44001214630419	5.02296327256435	0.414858040514429	0.249670861020495	0.560742666586102
Merged-chr2-49619313-2	chr2	49619213	49619413	+	897.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008449)	promoter-TSS (NM_008449)	-1.0	NM_008449	16574.0	Mm.256342	NM_008449	ENSMUSG00000026764	Kif5c	KINN|Khc|NKHC|NKHC2	kinesin family member 5C	protein-coding	3.33007348316535	3.15817377733284	3.58647418051443	2.95471416858888	3.20307572402974	3.26169747009052	3.47486573200549	3.32868249368192	0.186995026845629	0.744162964335011	0.89923574268619
Merged-chr8-11037620-1	chr8	11037520	11037720	+	785.0	f0_balb.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-29190.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	4.30694331484034	3.81422730851889	3.86766109946846	4.11684394052737	3.98247325303701	3.75701313510364	3.90300995234103	4.01402891036611	-0.333695549981153	0.456543702839142	0.739917647952291
Merged-chr1-38988664-3	chr1	38988544	38988744	+	794.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026850, intron 1 of 5)	intron (NM_026850, intron 1 of 5)	830.0	NM_026850	68833.0	Mm.28121	NM_026850	ENSMUSG00000026078	Pdcl3	1110061A19Rik|C80025|Viaf1	phosducin-like 3	protein-coding	3.39194487633151	3.31267811374175	3.28201567418702	3.55493284853099	3.14789195528181	2.98817382944964	3.32550089037753	3.39050777838342	-0.64823200984279	0.24743134572426	0.558558744007711
Merged-chr16-17127467-3	chr16	17127358	17127558	+	855.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2256.0	NM_001358255	70458.0	Mm.234165	NM_183287	ENSMUSG00000049916	2610318N02Rik	AL033325	RIKEN cDNA 2610318N02 gene	protein-coding	3.45806920331461	3.33632181760358	3.40225893894631	3.38256281010446	3.55587966257524	3.39379931389069	3.54940807702856	3.61141095350634	0.469040812913491	0.339571395326214	0.648774648981312
Merged-chr3-144205384-6	chr3	144205300	144205500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010723)	promoter-TSS (NM_010723)	-145.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	6.95310638290997	6.88459162980276	7.37665929977489	7.163820900253	6.97037764090334	6.92199938708199	6.76935070506999	6.72433148796994	-0.354365800008006	0.0915173586636569	0.330548235262619
Merged-chr18-35664765-2	chr18	35664665	35664865	+	922.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21A|LTR|ERV1	-2579.0	NM_029485	71242.0	Mm.151498	NM_027733	ENSMUSG00000024352	Spata24	2700012K08Rik|4930583E11Rik|5133400G04Rik|AU016220|TIPT|TIPT2	spermatogenesis associated 24	protein-coding	3.24096779761364	2.96738856698895	3.29236503706279	2.9368142468384	2.80342755381006	2.92274884240324	2.87546257239388	3.18652882982406	-0.671199621599693	0.278455782931318	0.590625310604573
Merged-chr14-27351671-4	chr14	27351560	27351760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-9729.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	6.60031789594653	7.196243262376	6.84954159962377	7.02115139780831	6.67637093252082	6.66097442295044	6.28060162482481	6.38682864180167	-0.606362021168073	0.0094116455389374	0.0755937167474639
Merged-chr9-61898561-2	chr9	61898461	61898661	+	682.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15949.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	3.19588283186248	3.20879470756313	3.02092160550571	2.55907112958562	3.1216387253732	2.92840345008604	3.00993793577948	3.2479203072116	0.248241884907941	0.70623216798704	0.881956936069433
Merged-chr19-11118679-4	chr19	11118574	11118774	+	895.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027058, intron 1 of 6)	intron (NM_027058, intron 1 of 6)	12204.0	NM_027058	69369.0	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	5.54182680380655	4.99882228007079	5.56452047696505	5.0685121213648	4.62971116044961	4.79598278125447	4.11362807126187	4.51650706407285	-1.56664115689973	7.05448129969306e-05	0.00151244254346642
Merged-chr3-36853374-3	chr3	36853292	36853492	+	972.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_A|LINE|L1	-9714.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	4.69380656876868	4.7390059746676	4.87459495111438	4.12540002553629	3.73692638313484	4.04387476284479	3.84118132643179	3.79152463304221	-2.02110536075781	2.02646068168125e-05	0.000515332064528008
Merged-chr11-22512650-4	chr11	22512493	22512693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153596, intron 1 of 3)	CpG	310.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	6.63058266752336	6.84697684410026	6.93583708780644	6.69451139712062	6.64038287060105	6.47135827640573	6.68827056698552	6.71769373729656	-0.204879325162868	0.321984479661473	0.633481969373104
Merged-chr17-32830262-4	chr17	32830120	32830320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293229)	promoter-TSS (NM_001293229)	41.0	NM_001293229	240064.0	Mm.476307	NM_177359	ENSMUSG00000095253	Zfp799	6030490I01Rik	zinc finger protein 799	protein-coding	5.93954125118733	6.13490014171631	5.8424714204104	5.91378030138441	6.35967383998158	6.33240691595558	6.3262659126725	6.26669108965268	0.55563828714628	0.014504747135357	0.102413787952344
Merged-chr8-106011444-4	chr8	106011362	106011562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025518)	promoter-TSS (NM_025518)	-16.0	NM_025518	66369.0	Mm.287500	NM_025518	ENSMUSG00000031901	Dus2	2310016K04Rik|Dus2l	dihydrouridine synthase 2	protein-coding	6.0025679101455	5.85710160203748	5.65045322009365	5.9802419896047	6.22300417097647	6.3995785034667	6.07795840036241	6.32698747725532	0.573827764651152	0.0176893676868474	0.117784050756044
Merged-chr8-25601480-4	chr8	25601376	25601576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308482)	promoter-TSS (NM_001308482)	-125.0	NM_001308481	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	7.63107984134333	7.78215699364363	7.90563364960732	7.71841871081902	7.73808231127387	7.70977206785302	7.85353394049452	7.82820857350759	0.0287848160114905	0.862302220581642	0.948095550662372
Merged-chr8-33646970-4	chr8	33646867	33647067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-4991.0	NM_178648	108159.0	Mm.29301	NM_178648	ENSMUSG00000052906	Ubxn8	D0H8S2298E|Rep-8|Rep8h|Ubxd6	UBX domain protein 8	protein-coding	6.21225238668062	5.74420215848413	6.029500608682	6.6209480637176	6.08396974842629	5.9134761080961	6.21873584722759	6.24631864774771	-0.136988109252358	0.63002282574951	0.842559648166699
Merged-chr16-20372277-4	chr16	20372176	20372376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013790, intron 16 of 29)	intron (NM_013790, intron 16 of 29)	-46872.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	7.0080019951929	7.06918589874192	6.94693970174381	7.236447906003	7.06550618556841	6.57427429124597	6.61132894884207	6.70374911710158	-0.432628452643716	0.0470519482189452	0.223140157390652
Merged-chr9-118506213-4	chr9	118506112	118506312	+	975.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018748)	promoter-TSS (NM_018748)	-106.0	NM_018748	54214.0	Mm.10409	NM_018748	ENSMUSG00000038708	Golga4	AI225887|AU019508|Olp-1	golgi autoantigen, golgin subfamily a, 4	protein-coding	5.2068321432421	5.37894015361254	5.03310639512494	5.30249449412141	5.58403539422052	5.05580201336993	5.39078244627667	5.59402676117265	0.336919690879636	0.266792739604191	0.57842963999018
Merged-chr17-35127049-4	chr17	35126958	35127158	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_033477, exon 3 of 3)	5' UTR (NM_033477, exon 3 of 3)	656.0	NM_033477	114585.0	Mm.42070	NM_033477	ENSMUSG00000043311	D17H6S53E	G4|NG34	DNA segment, Chr 17, human D6S53E	protein-coding	4.67447575327036	4.90381078935661	4.67521702402465	4.59386653094768	5.13642205522556	4.81141989375048	5.2822582569488	5.35677044173569	0.895712857053238	0.00677316959969248	0.0594460467246006
Merged-chr4-132074712-4	chr4	132074587	132074787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128607, intron 1 of 17)	CpG	626.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	6.17012265687013	6.11763780469151	6.24826290987978	6.55001728421194	6.07894943860184	5.81704782176029	6.17853946594848	6.26232178294118	-0.309864108369866	0.216196699835765	0.522695047641381
Merged-chr5-113993902-4	chr5	113993821	113994021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198109)	promoter-TSS (NM_198109)	-164.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	6.15151747506951	6.26171487144676	5.99768816908757	5.93735685491416	6.61385090752229	6.55610149271022	6.58379258964228	6.26734466807	0.648763302468255	0.00480109017942961	0.0461183262998138
Merged-chr6-37592548-4	chr6	37592450	37592650	+	859.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62377.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	4.74025229226579	4.42952466531248	4.63120935109262	4.18227664723477	4.75011973689507	4.50864185940842	4.44803086732565	4.73783788442458	0.287615781621648	0.453467162411789	0.737548594778894
Merged-chr8-94373285-4	chr8	94373190	94373390	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-13139.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	4.8637665515666	4.27700388908684	4.82914941822148	4.84568108403342	4.61836063037592	4.92868618742529	4.94083779171647	4.89571153419423	0.239531056055797	0.510811911127692	0.775005008659931
Merged-chr12-52006486-4	chr12	52006422	52006622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029545)	promoter-TSS (NM_029545)	-15.0	NM_001347404	328092.0	Mm.2821	NM_029545	ENSMUSG00000020956	Dtd2	4930578F06Rik|6530401N04Rik|B830049N13Rik	D-tyrosyl-tRNA deacylase 2	protein-coding	6.69962915375498	6.47664075447929	6.23900475702666	6.39319015594619	6.70832464549509	6.70856239539792	6.62315864338753	6.51143505174708	0.268340222403795	0.216455633999536	0.523019063495585
Merged-chr8-90965726-8	chr8	90965592	90965792	+	954.3035890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 4 of 39)	L1MC4a|LINE|L1	33443.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	4.9290867196887	4.67735497249765	5.12346324551344	4.87049559123844	4.65457449244781	5.23307684791738	4.87103700658099	4.81758786006535	-0.00601387973281684	0.986156099807201	0.994900845496066
Merged-chr17-6794604-4	chr17	6794511	6794711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11831.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	7.21749182742013	7.10177998459571	6.78700315574988	7.13562904439742	7.23854193937861	7.09374060785458	7.27541324596523	7.06565660364067	0.135920581561099	0.487256193179263	0.760600900973846
Merged-chr14-66953332-3	chr14	66953234	66953434	+	742.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42126.0	NM_175498	239157.0	Mm.44358	NM_175498	ENSMUSG00000046204	Pnma2	A830049P17Rik|mKIAA0883	paraneoplastic antigen MA2	protein-coding	3.69968610028465	3.705317368052	3.75438748755212	3.74230297702966	3.66640284984161	3.87429849936212	4.17755077142079	3.80421201989087	0.471030490599825	0.304377624145172	0.616988329768724
Merged-chr19-16599526-2	chr19	16599426	16599626	+	733.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_008137, intron 3 of 6)	intron (NM_008137, intron 3 of 6)	163859.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	3.29212015295669	3.21425917484615	3.23735932772662	2.76740076635095	3.35251184366251	3.1672800749167	3.0457525235288	3.23556382157348	0.278682146979795	0.642720008201567	0.849327332982684
Merged-chr8-33661284-3	chr8	33661207	33661407	+	823.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	RLTR21|LTR|ERVK	8069.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	2.89458450193374	3.01251808864886	2.89487268006054	2.47282428201415	3.79230596849431	3.84878838343145	3.56571144251058	3.58056657492374	3.88061023223723	6.19708163272811e-09	3.43537440448562e-07
Merged-chr11-98813511-3	chr11	98813428	98813628	+	976.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138660, intron 3 of 13)	intron (NM_138660, intron 3 of 13)	-3439.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	3.86833108456706	4.32873166400425	4.1622183705352	4.04308038713614	4.08010731217087	4.28765702904011	3.85366696441401	3.81083883081161	-0.231884717868854	0.601320208253958	0.827079634846541
Merged-chr9-65435795-4	chr9	65435710	65435910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027134)	promoter-TSS (NM_027134)	28.0	NM_027134	69606.0	Mm.287956	NM_027134	ENSMUSG00000059183	Mtfmt	2310020P08Rik	mitochondrial methionyl-tRNA formyltransferase	protein-coding	5.77264970616462	5.63854001169661	5.07917377902105	5.16354535293869	5.65903848171104	5.4685813320369	5.47342265505788	5.74709297941708	0.273976836230113	0.37730323155731	0.67996861637713
Merged-chr14-105898936-4	chr14	105898795	105898995	+	981.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2076.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	5.42747482862043	5.45793494712182	5.68386337464181	5.81087150737321	5.1706449918888	4.87226545805015	5.25220721044525	5.53300029544754	-0.684429373536662	0.0271088023634005	0.156659693385117
Merged-chr12-36053818-3	chr12	36053722	36053922	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11344.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	6.42082482210649	6.28054619042418	6.66881281950766	6.87771648737888	4.14488362189338	4.39339108038499	4.5354763728832	4.49628215204725	-4.34520050643955	9.87627528951021e-29	1.04922895348067e-25
Merged-chr6-34910823-6	chr6	34910635	34910835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013366)	promoter-TSS (NM_001013366)	96.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	6.87178285323987	7.5746331430771	7.59846580569969	7.180750019901	7.03141224171241	7.32193296372474	6.97432804219676	7.12804973590088	-0.299667699567277	0.188662898182321	0.487393382760513
Merged-chr2-28517418-4	chr2	28517323	28517523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009058, intron 1 of 17)	intron (NM_009058, intron 1 of 17)	4256.0	NM_001145834	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	6.23739901972031	6.17409943734816	5.71042224048331	5.69123798539667	6.36627080334597	6.08819593893253	6.0746060165239	5.67885526367008	0.180119360144136	0.530937680587041	0.786915422519625
Merged-chr15-98506421-4	chr15	98506336	98506536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8962.0	NM_001001807	258502.0	Mm.377539	NM_001001807	ENSMUSG00000054036	Olfr279	MOR122-1|Olfr234|Olfr234-ps1|Olfr279-ps1	olfactory receptor 279	protein-coding	7.24330373341934	6.9575937331447	6.93996940580434	7.04714519170962	7.1161516977713	6.80390769033451	7.20831179005416	7.13098963592009	0.0366012893050188	0.854076079101792	0.945008271417317
Merged-chr8-84042283-4	chr8	84042178	84042378	+	967.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_173184)	TTS (NM_173184)	297.0	NM_016671	50931.0	Mm.38386	NM_016671	ENSMUSG00000005465	Il27ra	CRL1|IL-27R|Tccr|WSX-1|Wsx1|zcytor1	interleukin 27 receptor, alpha	protein-coding	4.70017600266706	5.1131715206781	4.74190137408291	4.5490745424402	5.13374815447987	4.95704429346083	5.15522032247404	4.81697515477484	0.487267191470196	0.157221384855755	0.443676840686984
Merged-chr5-52677339-4	chr5	52677234	52677434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7633.0	NM_172490	211006.0	Mm.244719	NM_172490	ENSMUSG00000029173	Sepsecs	AA986712|D5Ertd135e|SLA|SecS	Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase	protein-coding	6.72145640499308	6.95705811089238	6.70926885281262	6.96524256898963	5.52702947778849	5.78331906527476	5.90393857439327	5.56110380669984	-1.769529874818	1.5935545536064e-13	2.00402154719346e-11
Merged-chr13-52024944-4	chr13	52024842	52025042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71799.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	5.93245571025807	5.55461338592455	5.54251359468595	5.80434223323538	5.34810277999647	5.31263134179453	5.45983793355644	5.30218221846842	-0.631742647609565	0.0231834835623306	0.141081639790638
Merged-chr5-135078301-4	chr5	135078218	135078418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199677)	promoter-TSS (NM_001199677)	-52.0	NM_001199677	194309.0	Mm.44356	NM_177574	ENSMUSG00000043614	Vps37d	Wbscr24	vacuolar protein sorting 37D	protein-coding	5.92870769946294	6.03495778744646	5.64954505307445	5.9013598556672	6.23029834533324	6.3885662600925	6.04929727588257	5.72818935032262	0.367209894177007	0.164256189631971	0.454381311669139
Merged-chr4-107017701-2	chr4	107017601	107017801	+	986.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_198438, intron 5 of 16)	intron (NM_198438, intron 5 of 16)	49165.0	NM_025500	56280.0	Mm.29517	NM_025500	ENSMUSG00000028622	Mrpl37	2300004O14Rik|AI132596|MRP-L2|Rpml2	mitochondrial ribosomal protein L37	protein-coding	3.12122626333665	3.06378060311708	3.0618781468291	3.26820928547417	2.76855319210604	3.04193855607633	3.05101479163687	3.33401620311184	-0.307946925786791	0.612615209444974	0.832832725096038
Merged-chr1-92648149-8	chr1	92648038	92648238	+	948.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153114, intron 1 of 4)	intron (NM_153114, intron 1 of 4)	703.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	4.14756504875921	4.01784353602741	4.60375412768955	3.91033781672461	4.00821487472414	4.07537919528452	3.76712331093954	4.27572016610778	-0.373544160480027	0.419910795835494	0.712991415178256
Merged-chr7-130533505-4	chr7	130533384	130533584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162855, intron 10 of 10)	intron (NM_001162855, intron 10 of 10)	-13115.0	NM_001271343	11907.0	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	6.51807149863347	7.0466416892526	6.4466576581838	6.78311980840063	7.01280187911129	7.09926085907462	6.86236144279541	6.81158047464501	0.312197654719909	0.164603742451854	0.45485234168206
Merged-chr10-67126464-4	chr10	67126377	67126577	+	938.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207221)	promoter-TSS (NM_207221)	-781.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	4.88943063408332	5.03813454555612	5.02533853666495	4.99305159647372	5.05734628094076	4.74661485194881	4.547659449584	4.81369989472425	-0.342283491079492	0.309562189552925	0.621788726195435
Merged-chr14-64870265-2	chr14	64870165	64870365	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 4 of 9)	Lx5c|LINE|L1	79592.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	3.70316351124448	3.50785895553037	3.4499505749708	3.14338100605105	3.49574751490284	3.44740343600106	3.19383422398937	3.6546204288413	0.00662853688065188	0.990351143022809	0.996162048698599
Merged-chr9-37545051-3	chr9	37544951	37545151	+	622.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020518)	TTS (NM_020518)	5796.0	NM_020518	57276.0	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	3.77202439276881	3.53436330117544	3.56818992988185	3.55310848822728	3.51727980018716	3.79277401984323	3.49852077878049	3.67232560312286	0.0483666352774996	0.919847817186153	0.970406583631903
Merged-chr5-123019501-3	chr5	123019397	123019597	+	780.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	4423.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	3.44396757520201	3.67534429360229	3.55514418028228	3.45789820928716	3.48547816719307	3.72419850172768	3.43161381939419	3.38362619044894	-0.0759129964796093	0.878966148185564	0.954735593859446
Merged-chr3-148805912-4	chr3	148805804	148806004	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	148731.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	5.23906236670335	5.25948994772177	5.41376626425689	5.14235567653989	5.46231812030018	5.17892629166275	5.21415718065416	5.10579707268439	0.00429231937788483	0.988514821609863	0.995465556823073
Merged-chr9-57259934-4	chr9	57259823	57260023	+	986.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028820, intron 1 of 2)	intron (NM_028820, intron 1 of 2)	2676.0	NM_028820	74211.0	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	5.72506168210744	5.82613179122455	4.99722139917456	5.38794500484936	5.31801606834876	5.77832787338796	5.57635947996231	5.34832837938202	-0.0143919228064787	0.964535390274247	0.987424880903373
Merged-chr2-156720129-4	chr2	156720030	156720230	+	961.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042488)	promoter-TSS (NM_001042488)	779.0	NR_040505	74846.0	Mm.443946	NR_040505	ENSMUSG00000086638	4930405A21Rik	-	RIKEN cDNA 4930405A21 gene	ncRNA	5.49670833878256	5.39186253467861	4.89503373410413	4.5884067877792	5.57200243783581	5.718771229812	5.05793838957683	4.89178075406328	0.397269653099373	0.311473213599425	0.62351581603604
Merged-chr2-27426547-3	chr2	27426478	27426678	+	946.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_133905, exon 1 of 30)	non-coding (NR_133905, exon 1 of 30)	1030.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	4.41987417248141	4.73127809198941	4.42055410597777	4.2973766742018	4.52596874247714	4.79846586177694	4.67904898599406	4.5044631897435	0.352197000656325	0.339530766568791	0.648774648981312
Merged-chr7-6155663-4	chr7	6155553	6155753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	CpG	318.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	7.30933867426616	7.28176425863546	7.1019730076437	7.34743636163907	7.6333308779119	7.59029429118736	7.60834457053791	7.75739741216869	0.503697293144842	0.00388031279044681	0.0391435351631539
Merged-chr9-59767125-4	chr9	59767054	59767254	+	736.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173018, intron 1 of 43)	intron (NM_173018, intron 1 of 43)	15980.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	3.47057836098188	3.62310314249396	3.41194164014065	3.4687717042563	3.48032737045318	3.69857184540354	3.66801841559987	3.63165637311847	0.39228490370183	0.415617014637407	0.709851655704734
Merged-chr11-101174145-6	chr11	101174062	101174262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007721, exon 2 of 2)	exon (NM_007721, exon 2 of 2)	1281.0	NM_007721	12777.0	Mm.8021	NM_007721	ENSMUSG00000044052	Ccr10	C-C CKR-10|CC-CKR-10|CCR-10|Cmkbr9|Gpr2	chemokine (C-C motif) receptor 10	protein-coding	4.572399185065	4.96501216362827	5.07204357579127	4.17070116452428	4.6421456345647	4.94817631898338	4.71404201354612	4.8435935335139	0.119567354385979	0.766419749385495	0.908638755872086
Merged-chr3-87498351-4	chr3	87498277	87498477	+	726.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113238, intron 11 of 11)	Lx8|LINE|L1	-27201.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	3.92815084213811	3.59430628199797	3.97339150575083	3.75459653957346	3.64699672022285	3.73992227543206	3.91130934659783	3.62014324877295	-0.245047363355023	0.600809201611132	0.826967246454786
Merged-chr16-90885573-4	chr16	90885460	90885660	+	959.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027627, intron 4 of 6)	intron (NM_027627, intron 4 of 6)	49289.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	5.0610092703078	5.29352969577187	5.21979919347215	5.22904239522379	5.03945805559901	4.8078469987937	4.85859212620966	5.1861717826435	-0.42179347130733	0.175838013951229	0.470658653309832
Merged-chr2-169780131-1	chr2	169780031	169780231	+	600.333313	f0_c57.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	146485.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	2.46393252038899	2.41076812465947	2.46412901395665	2.26422062435256	3.14282340270516	3.20611385603875	3.2278691790414	3.29020362701482	4.74875097533734	2.0468960578601e-08	1.02602827114383e-06
Merged-chr18-53254670-4	chr18	53254541	53254741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	8979.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	7.69266894394734	7.49858860323112	8.0041648037061	8.03711611965434	7.8060083621403	7.57012180301531	7.98520468469784	7.91778439268064	-0.00363334538561168	0.985521143824862	0.994683331682783
Merged-chr9-56506549-4	chr9	56506435	56506635	+	849.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87916.0	NM_025812	66867.0	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	3.77733902442971	3.80175360488054	3.72619265098191	3.7735015577707	3.698734870989	3.89720037246177	3.54494442186306	3.87303170407534	-0.0391981479212729	0.931716584286743	0.97535206477795
Merged-chr16-36935405-1	chr16	36935305	36935505	+	1000.0	f0_balb.idr	intron (NM_008225, intron 1 of 13)	intron (NM_008225, intron 1 of 13)	422.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	4.60218867515592	4.92041727685282	4.81190323959857	3.74605895555193	4.18707639655225	4.48484921756386	4.37787550687835	4.35018928195041	-0.545453624909526	0.249130635196492	0.560302603581264
Merged-chr13-34653599-4	chr13	34653509	34653709	+	958.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025831)	promoter-TSS (NM_025831)	686.0	NR_105041	101056149.0	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	-	predicted gene 15908	ncRNA	5.00369433368275	5.06570843672841	4.67654063762454	4.7861167721802	4.791412404258	4.72440560636451	5.07199409839581	4.67354395046312	-0.128180714869857	0.707387873418555	0.882444677286559
Merged-chr8-85038024-5	chr8	85037851	85038051	+	830.5644530000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122843, intron 1 of 24)	CpG	783.0	NM_001122843	212999.0	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	3.25502694763882	3.29885536010005	3.31492413603301	3.2601764218928	3.24356982869561	3.54137662016489	3.46403921890743	3.36999309587261	0.436027341480846	0.397210704555648	0.695630734730866
Merged-chr5-65724594-4	chr5	65724563	65724763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-B4-int|LTR|ERVL	-26807.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	6.54686898280691	6.84997160769546	6.76466631749372	6.61293879563658	6.87500460222177	7.00877024483924	6.7160119918926	6.59281456236425	0.160580051309278	0.448691367555996	0.733878953633932
Merged-chr6-97155793-3	chr6	97155736	97155936	+	798.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081111, intron 16 of 16)	B1_Mus1|SINE|Alu	-6953.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	2.98021727901267	2.87750901510482	3.14401674826427	2.87757479961924	2.93307992078101	2.75585847106761	2.84925007737191	2.85736919469121	-0.509332866517646	0.40703963897716	0.703457348417477
Merged-chr3-127282570-4	chr3	127282452	127282652	+	900.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	121247.0	NR_105029	100862268.0	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	4.90702648680641	5.05143248773628	5.6717282130923	5.86909252850453	4.16763299024565	4.35081951414286	4.36405030588799	4.43298948945446	-2.35007798008476	1.02825760877126e-08	5.43761874700816e-07
Merged-chr3-133758027-3	chr3	133757930	133758130	+	949.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-213640.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	4.06863442547497	4.09063571245104	4.0692531800601	4.06665746135393	4.01272502352244	3.56222480791586	3.91016569301779	4.0667507407885	-0.448559477786851	0.313495401567097	0.625420982817056
Merged-chr10-3973814-4	chr10	3973707	3973907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 1 of 27)	CpG	732.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	7.28520192759878	7.28661799599396	7.32701044019379	7.65062615802584	6.99235106970166	6.9026934293488	7.12030581901313	6.78191894942648	-0.615990888800761	0.00228484354499407	0.0259258534495669
Merged-chr6-84742430-1	chr6	84742330	84742530	+	562.0	f0_balb.idr	intron (NM_177077, intron 20 of 21)	MLT1H|LTR|ERVL-MaLR	-148522.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	2.86604688626419	2.71077044779929	2.75002462492552	2.8392553976499	2.52295791691511	2.65599309366437	2.54604216398848	2.68631471827472	-0.996501676160278	0.134153672239061	0.407812267192148
Merged-chr5-34531842-4	chr5	34531745	34531945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	6061.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	6.03710195717847	6.32858305145054	6.34368765234472	6.05393332621855	5.82727896542453	6.14799724134514	5.87134286470646	6.17664203399529	-0.28822865420741	0.246200848113463	0.557460560117961
Merged-chr3-95694040-4	chr3	95693958	95694158	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6141.0	NM_001301705	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	5.12283618930949	5.04351511970835	4.82180886525261	4.91109598930076	4.54440589108289	4.87948230023258	4.97396098154369	4.89211405877893	-0.311918764244158	0.352708592754262	0.659679630621423
Merged-chr10-42270872-4	chr10	42270762	42270962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	5880.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	7.79833553738565	8.06341534056998	8.1226344907748	8.20220135705403	8.10508433150686	8.14909491345015	7.9051552471757	8.06029692757992	-0.00470928368237705	0.978095548546051	0.992205923377531
Merged-chr9-82829264-4	chr9	82829171	82829371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022986)	promoter-TSS (NM_022986)	-535.0	NM_022986	65099.0	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	5.17006009229295	5.55221628326352	5.53042285830406	5.26416476170476	5.66884491391381	5.67756432942619	5.60186975304465	4.61976015561199	0.132672105910037	0.713783566031802	0.885499171196626
Merged-chr13-48967251-8	chr13	48967147	48967347	+	958.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015601)	promoter-TSS (NR_015601)	581.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	4.14993657314468	3.94249299224476	4.24438168389836	4.23257047854889	4.2626969094881	4.06399579713284	4.54064153645575	4.59430394826134	0.556727057384247	0.175146716262559	0.469871414212748
Merged-chr9-119156693-5	chr9	119156615	119156815	+	853.5618900000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146230, intron 1 of 11)	CpG-15481	378.0	NM_146230	235674.0	Mm.379402	NM_146230	ENSMUSG00000010651	Acaa1b	-	acetyl-Coenzyme A acyltransferase 1B	protein-coding	3.24776666206497	3.50466253191151	3.78749683880961	3.36037340801524	3.58743715673529	3.48966142066974	3.53154416113059	3.54384411106743	0.187001127162322	0.714794757627469	0.886003030420421
Merged-chr17-40877797-3	chr17	40877703	40877903	+	814.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027834, intron 1 of 1)	intron (NM_027834, intron 1 of 1)	2755.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	3.08009691976739	2.92258914113747	3.01249444567184	2.78161184880446	3.51049184370557	3.54744953122201	3.6000530643971	3.14360877133961	2.02630565262706	0.000348071113485455	0.00571914907358753
Merged-chr8-83108754-1	chr8	83108654	83108854	+	567.0	f0_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-56598.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	2.67793422544005	2.41731594568502	2.62296162911236	2.58945084551962	2.10916342914194	2.25026446200342	2.2231371196106	2.30191125480886	-2.5369596200407	0.00366192482591138	0.0373480652218865
Merged-chr2-178023199-4	chr2	178023138	178023338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177400)	promoter-TSS (NM_001177400)	-46.0	NM_001177400	626848.0	Mm.422604	NM_001177399	ENSMUSG00000074519	Zfp971	Etohi1	zinc finger protein 971	protein-coding	6.21416659815791	5.88119976725718	6.13309966905431	5.85404412589727	6.6479075721465	6.44997222587536	6.61438910627699	6.61522785884492	0.864868944402012	0.000132432443148093	0.00256920383506081
Merged-chr7-7130897-3	chr7	7130788	7130988	+	923.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029584, exon 4 of 4)	3' UTR (NM_029584, exon 4 of 4)	5867.0	NM_029584	76373.0	Mm.159732	NM_029584	ENSMUSG00000063535	Zfp773	2810409K11Rik	zinc finger protein 773	protein-coding	3.75220245880657	3.68966129837521	3.97679926036501	3.55418309675302	3.65712958098569	3.5965450602723	3.4071417246293	3.59443184067774	-0.538920690155276	0.27539633909038	0.587162977987545
Merged-chr6-122925779-3	chr6	122925677	122925877	+	640.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199311, intron 2 of 5)	intron (NM_199311, intron 2 of 5)	3929.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	3.54365078978365	3.41188181342109	3.31005978037624	3.71441260501998	3.17107279353859	3.86226933214674	3.47576175480887	3.54213715441726	0.0596221909074264	0.913852799628799	0.967694418307962
Merged-chr16-33177849-4	chr16	33177744	33177944	+	913.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-7227.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	4.11968736403368	4.46083989050581	4.01016588207165	3.94077927693632	4.91015190988059	4.30069669005424	4.50516997563639	4.73671465212678	1.16320045812472	0.00466090627716031	0.0451205393878559
Merged-chr7-92675891-3	chr7	92675767	92675967	+	829.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie1b|DNA|hAT-Charlie	-5955.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	3.64597037484134	4.33617591873458	3.95418781357962	3.93180684305593	3.63885017891433	3.50882788781896	3.68856880697864	3.75521829751618	-1.00478956877341	0.0413801105961915	0.205999771597406
Merged-chr3-61365647-6	chr3	61365506	61365706	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028712, exon 1 of 1)	exon (NM_028712, exon 1 of 1)	1099.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	4.74028004709494	4.72652221545832	4.74105731476071	4.39519458693345	4.49555307019085	4.98781953223755	4.89498928329179	5.01153309033339	0.438995174517945	0.225467001584755	0.533900519172338
Merged-chr3-115644546-3	chr3	115644467	115644667	+	905.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70488.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	3.48070988531714	3.44209597150947	3.67868308904077	3.28073799765301	3.26022295951326	3.36053901313772	3.41325662798778	3.42475499883038	-0.366927442702534	0.482906927040238	0.757463266863053
Merged-chr12-81971158-6	chr12	81971008	81971208	+	995.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 19 of 35)	intron (NM_018814, intron 19 of 35)	111078.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	5.13423255386863	4.40280954859799	4.722676199703	5.24227064932417	4.83304074348273	4.77432905608652	4.48269626150717	5.29576070450406	-0.0932053988889454	0.820355549794716	0.931216561407907
Merged-chr17-48192979-1	chr17	48192879	48193079	+	571.0	f0_balb.idr	Intergenic	Intergenic	-25722.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	3.84066455734339	3.85355880618488	4.02499149970517	3.43167877472994	3.6209038134292	3.85890782528818	3.72321513758071	3.8873388082128	-0.058291550996419	0.905101798171863	0.964738029800911
Merged-chr15-55557348-4	chr15	55557263	55557463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134092)	promoter-TSS (NM_134092)	-45.0	NM_134092	105837.0	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	5.43645240763159	5.34083782688693	5.37683981216196	5.30205793723342	5.60872930626303	5.64245596783851	5.62561256077621	6.06917167286231	0.663415101927363	0.0164105592085319	0.111896464594702
Merged-chr12-56440595-4	chr12	56440469	56440669	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88851.0	NR_045082	104798.0	Mm.310950	NR_045082	ENSMUSG00000112343	Sfta3-ps	AI413669|E030019B13Rik|Nanci	surfactant associated 3, pseudogene	ncRNA	4.45320263199818	4.15171251450025	4.15276877636032	4.47578317859331	3.96097978215153	4.0665190051764	4.50645834458598	4.28794103104881	-0.264238026962688	0.531239715402584	0.787097369325
Merged-chr2-90940379-4	chr2	90940278	90940478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017368)	promoter-TSS (NM_017368)	-19.0	NM_198683	13046.0	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	6.98070691906344	6.94063930134925	6.41805910206393	6.8637694351443	6.6827447923156	6.76955034677552	6.71156702574014	6.48615499933236	-0.223490112736297	0.312777654634612	0.624668930393857
Merged-chr6-97855763-7	chr6	97855665	97855865	+	993.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	48707.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	4.83007417822664	4.93308839444104	5.08979746108905	4.69058628434757	4.53303840390818	4.59091645925869	4.53043573273317	5.02643401005311	-0.418016784423971	0.247044486847031	0.558168726560377
Merged-chr5-64743214-2	chr5	64743120	64743320	+	807.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-60303.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	3.07709030773453	2.79727002718329	3.0104591621562	2.94483654813767	3.56965450083163	3.37534666376222	3.35507473411996	3.41871201189381	1.82326501246774	0.00108553773843245	0.0143619871159634
Merged-chr4-22358764-3	chr4	22358668	22358868	+	932.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172988, intron 1 of 8)	intron (NM_172988, intron 1 of 8)	1225.0	NR_104380	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	3.88299418546147	3.87139954648867	4.68853503992591	4.35194850893909	3.94803645732819	3.77155098930723	3.63746452292453	3.82680048455993	-1.18538798489758	0.0173006599864199	0.116038693818139
Merged-chr11-114747975-4	chr11	114747894	114748094	+	950.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034878, intron 8 of 12)	intron (NM_001034878, intron 8 of 12)	-17395.0	NM_001102615	286942.0	Mm.308713	NM_001102615	ENSMUSG00000010021	Kif19a	Kif19	kinesin family member 19A	protein-coding	5.10345052455286	5.19166853514444	4.725249339869	5.25620971702229	5.27076238160473	5.4299722275922	4.86733755632833	4.99841998423156	0.121460345396565	0.718093874703749	0.887335796877561
Merged-chr4-148644091-5	chr4	148644047	148644247	+	904.0300289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085505, intron 1 of 10)	intron (NM_001085505, intron 1 of 10)	830.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	3.49271112454619	3.25657078757531	3.34425147453749	2.82699455618658	2.89021962952467	3.02296563859171	3.03943324822784	3.39377537038411	-0.575803002553599	0.363129996992643	0.668301532111371
Merged-chr15-81610480-4	chr15	81610383	81610583	+	988.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177821, exon 4 of 31)	exon (NM_177821, exon 4 of 31)	24269.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	5.1125740120522	4.95507365959275	4.15603669341327	5.15678196148062	4.61719985425088	4.45950906735776	5.14466024136001	4.95391350671298	-0.171702483949432	0.690040703395301	0.873708755939177
Merged-chr9-108936187-1	chr9	108936087	108936287	+	803.0	f0_c57.idr	promoter-TSS (NM_025407)	promoter-TSS (NM_025407)	-461.0	NM_025407	22273.0	Mm.335460	NM_025407	ENSMUSG00000025651	Uqcrc1	1110032G10Rik	ubiquinol-cytochrome c reductase core protein 1	protein-coding	4.02790630796376	4.46427030847865	3.4609190810254	3.62725419097442	4.06767112968291	4.15392292642425	3.6438992114543	3.87979379816476	-0.0119619904968772	0.982368424894559	0.993718392413265
Merged-chr6-129181834-4	chr6	129181725	129181925	+	902.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053109, intron 1 of 4)	intron (NM_053109, intron 1 of 4)	1210.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	4.14867546029684	4.33709707309966	4.29088471920761	4.1099491428482	4.38935515404581	4.62577746252943	4.39867785643138	4.33231643215508	0.533726251144841	0.160811811463683	0.449125948684512
Merged-chr11-119352268-4	chr11	119352177	119352377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018822, intron 2 of 7)	L1MB2|LINE|L1	3233.0	NM_018822	27029.0	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	6.68833150454974	6.41077047268104	5.9857026453564	6.26859363333556	6.21792475414445	6.06716589914239	5.90749438489156	6.55744976261215	-0.222910181969762	0.408859738973194	0.704688540858467
Merged-chr15-5134334-1	chr15	5134234	5134434	+	641.0	f0_c57.idr	Intergenic	RLTR12B|LTR|ERVK	-9527.0	NM_001013367	105787.0	Mm.207004	NM_001013367	ENSMUSG00000050697	Prkaa1	AI194361|AI450832|AL024255|AMPKalpha1|C130083N04Rik	protein kinase, AMP-activated, alpha 1 catalytic subunit	protein-coding	3.17649942910786	3.22421830532733	3.23824127604977	2.79132956181408	3.513230179947	3.67560062059357	3.33900157345614	2.97306643014538	1.04559081003572	0.0837683206465194	0.314679401271828
Merged-chr8-116627994-4	chr8	116627899	116628099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	intron (NM_029441, intron 1 of 6)	104992.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	7.24996233362815	7.648120625269	7.22851057964207	7.22205572693051	7.70598628034958	7.58687396675009	7.8511830521094	7.3330289793928	0.380444450329797	0.0630804861960534	0.26640595270849
Merged-chr9-57504488-3	chr9	57504382	57504582	+	881.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133982, exon 1 of 1)	exon (NM_133982, exon 1 of 1)	380.0	NM_133982	102614.0	Mm.274421	NM_133982	ENSMUSG00000062309	Rpp25	AI851155	ribonuclease P/MRP 25 subunit	protein-coding	3.85254468212302	3.97344196983279	3.5818348873069	3.7190333284388	3.66384511399012	3.92349149528697	3.68276615882373	3.989551364034	0.0859863506608477	0.853430612390583	0.944788460884744
Merged-chr1-131092449-4	chr1	131092361	131092561	+	966.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	5382.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	5.41963715844059	5.98787122370115	4.94123580250463	4.68400257336128	5.74306863271389	5.59604635913028	5.33503694122975	5.35826616587483	0.283797301148521	0.468458516353508	0.747800151054638
Merged-chr6-128362780-4	chr6	128362646	128362846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001326586)	promoter-TSS (NM_001326586)	76.0	NM_001326586	72440.0	Mm.143908	NM_197981	ENSMUSG00000048668	Rhno1	2510047L19Rik|5930416I19Rik	RAD9-HUS1-RAD1 interacting nuclear orphan 1	protein-coding	6.74745876100191	7.02724366425849	7.34221905535984	6.96100200810593	6.18043505689872	6.42444581589301	6.67055363950612	6.19656474109035	-0.941291070907498	7.83826931827923e-05	0.00165065139587514
Merged-chr13-98871374-4	chr13	98871151	98871351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 6 of 23)	PB1D9|SINE|Alu	19791.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	3.88690879228599	3.63930326673623	4.19661432581536	4.00919575132491	4.24234221123546	4.61515533607977	4.46152541292418	4.36543770741055	1.1733877515094	0.00605057916271174	0.0546124999014277
Merged-chr11-51594959-4	chr11	51594863	51595063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028398, intron 8 of 12)	intron (NM_028398, intron 8 of 12)	10206.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	6.53569494704432	6.89096345087627	6.18460827347317	6.50100824587495	6.37039594370689	6.50316282452925	6.53521850831749	6.54823991720364	-0.0997064717687254	0.673637408889268	0.865848986388019
Merged-chr5-125440745-4	chr5	125440645	125440845	+	956.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029752)	promoter-TSS (NM_029752)	-823.0	NM_001359486	76809.0	Mm.290720	NM_029752	ENSMUSG00000037905	Bri3bp	2410150I18Rik|AI841257|AW742481	Bri3 binding protein	protein-coding	4.48696394424792	4.83553489622388	4.65944536090032	4.85124407090945	4.79364343220444	4.61915903812059	4.92202424471837	4.77158379706114	0.109804192633558	0.750516713889687	0.901823997485197
Merged-chr1-85793387-4	chr1	85793299	85793499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133781)	promoter-TSS (NM_133781)	-42.0	NM_133781	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	7.563719565095	7.4937608273815	7.62652448217856	7.74896351288061	7.76746194724231	7.52684777110736	7.66387383886516	7.75143496469219	0.0871553649032741	0.61561449606764	0.834532999706678
Merged-chr14-122112505-4	chr14	122112376	122112576	+	662.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080556, intron 1 of 16)	intron (NM_080556, intron 1 of 16)	5394.0	NM_080556	68059.0	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	3.32928836642714	3.32294467026707	3.69175985801775	3.4644348507995	3.59309104409804	3.61277418351809	3.31808852404317	3.20366638069297	-0.0414801714170783	0.938197913919725	0.977531308163744
Merged-chr13-96431904-4	chr13	96431801	96432001	+	912.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042714, intron 9 of 13)	intron (NM_001042714, intron 9 of 13)	39259.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	4.52206664685872	4.8116593168169	4.2351004779795	4.73519763498447	4.8775476336797	4.65434550754284	4.66241163981648	4.68133352958127	0.255777493063648	0.488520125739942	0.761344727658502
Merged-chr16-38769790-4	chr16	38769689	38769889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001285793)	TTS (NM_001285793)	27530.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	6.1552965344209	6.00463196906107	6.03286700259648	6.5956982503273	6.21246617966438	5.68713205503999	5.9358365985128	6.04998672531309	-0.377131153449633	0.173048923405821	0.466923780102462
Merged-chr3-109357863-4	chr3	109357766	109357966	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	17183.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	5.12960459735491	4.69574257141976	4.84975500243904	4.52618238214522	4.6051170858894	4.8755838873364	4.63997306262228	4.65859411098381	-0.228385057585724	0.529788090713746	0.785948030615125
Merged-chr15-73596663-4	chr15	73596553	73596753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168255)	promoter-TSS (NM_001168255)	-127.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	6.81920891458818	6.82014537970556	6.82040625165182	7.0336684017947	6.60207665083676	6.4217554327893	6.57951312035973	6.86893240031772	-0.36586509387343	0.083654580140414	0.314458742345307
Merged-chr11-19019010-4	chr11	19018914	19019114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001193271)	promoter-TSS (NM_001193271)	-45.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	7.50105152079734	7.25754218259291	6.99409760573852	7.21271057845264	7.62383435375248	7.08976027170157	7.50877255962274	7.17465139231259	0.168092279089901	0.434739231363159	0.723961906024338
Merged-chr10-14045178-3	chr10	14045015	14045215	+	724.81665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	78736.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	2.71490817087618	3.05560751845139	2.78423921388338	2.78806591446405	2.95643700047986	2.95698965015897	2.96083496826149	2.97050498225358	0.522335547125479	0.386650246481475	0.687770216087633
Merged-chr16-32171155-4	chr16	32171046	32171246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5552.0	NM_001347181	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	7.4596552785405	7.69696584159383	7.37335796051156	7.24226252981109	7.46622434094052	7.3897102392605	7.41461727303476	7.28493535092364	-0.07286193888722	0.701581363349674	0.879767652498371
Merged-chr6-115534797-3	chr6	115534662	115534862	+	919.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9942.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	3.34969024360899	3.22987891599336	3.64698775777067	3.34038559030653	3.15611912933617	3.2827031642258	3.16048682907696	3.34831256154413	-0.586932494845719	0.281350406396891	0.59344034883054
Merged-chr14-64792764-4	chr14	64792659	64792859	+	941.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 37 of 39)	MTC|LTR|ERVL-MaLR	140228.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	4.39932999388641	4.1798285560066	4.40001620256272	4.63505144472428	4.4294420775439	4.08236953686157	4.25027522629997	4.55285817773692	-0.192684341724452	0.633877797658333	0.844900836080454
Merged-chr11-117353325-4	chr11	117353220	117353420	+	928.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017380, intron 5 of 9)	intron (NM_017380, intron 5 of 9)	21007.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	5.54185978458133	5.57888742484123	5.41595357803989	5.48173471052449	5.2414343274709	4.81559634852549	4.60907385486118	4.89163905377753	-1.07205243210064	0.00115456707081727	0.0151053596530208
Merged-chr4-145246891-4	chr4	145246793	145246993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011610)	promoter-TSS (NM_011610)	-23.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	6.16238692475604	6.22839989221372	6.16347802436672	5.85515187178622	6.56412240971307	6.34075342530568	6.63681123410868	6.66616519471868	0.699236973964901	0.00244936250853002	0.0273265514146944
Merged-chr2-129914374-3	chr2	129914281	129914481	+	978.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97959.0	NM_009374	21818.0	Mm.2961	NM_009374	ENSMUSG00000027401	Tgm3	AI893889|TG E|TG(E)|TGE|TGase E|TGase-3|we	transglutaminase 3, E polypeptide	protein-coding	3.90446906663465	3.86678297197197	3.42266144279146	3.71990349736374	3.30731842542259	3.20486573736034	3.4097680068527	3.0913449145069	-1.6835948406477	0.00285611341007232	0.0307870738508679
Merged-chr11-79611113-4	chr11	79611011	79611211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003283, intron 2 of 2)	intron (NR_003283, intron 2 of 2)	12052.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	6.40063259492219	6.5607124767221	6.62383826441434	6.76074885684158	6.11482823758808	6.1018839651359	6.12166779949317	6.16967773982477	-0.715052790520126	0.00133581696643071	0.0170184563904728
Merged-chr7-110614871-4	chr7	110614726	110614926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177324)	promoter-TSS (NM_177324)	94.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	5.81045587708251	5.96993812970699	6.0615763229267	5.45362075032777	5.28056559610442	5.91509314644416	5.68652704581854	5.37162520898588	-0.421933573937496	0.17138381387045	0.464632583792982
Merged-chr10-20046325-4	chr10	20046232	20046432	+	928.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 7 of 29)	intron (NM_008580, intron 7 of 29)	-102588.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	4.76377286693171	4.37553697768387	4.76455377680106	5.09683844218615	4.73087714424157	4.56095829979832	4.81287265130615	4.68562258180205	-0.190595769920519	0.610605421822073	0.831814034830111
Merged-chr3-88178191-4	chr3	88178085	88178285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045997)	promoter-TSS (NR_045997)	-400.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	8.53240057685963	8.55345009920161	8.50491601052216	8.36759304676437	8.42900522570247	8.45359237785977	8.50387943553017	8.41908574945707	-0.0451331196288903	0.759464868828339	0.905644997459077
Merged-chr4-156067740-4	chr4	156067642	156067842	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7940.0	NR_132444	100415901.0	Mm.437006	NR_132444	ENSMUSG00000086549	Gm13648	-	predicted gene 13648	ncRNA	4.71406164344225	5.05742352349991	4.75236601112511	4.42268842153699	4.87443658263695	4.6854448414884	4.69257860509168	4.4134694397591	-0.131345300711735	0.728716868488504	0.892191512842823
Merged-chr4-41506406-2	chr4	41506301	41506501	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253788, intron 4 of 5)	intron (NM_001253788, intron 4 of 5)	1363.0	NM_028624	73721.0	Mm.45614	NM_028624	ENSMUSG00000028441	1110017D15Rik	Cbe1|Smrp1	RIKEN cDNA 1110017D15 gene	protein-coding	3.49151314022519	2.89375053852369	2.91050801535459	2.8175625288779	3.35116061297992	3.45992404483421	3.22022081099246	3.11166310086192	0.913052236096399	0.138972387649705	0.414552151873265
Merged-chr16-87440407-4	chr16	87440310	87440510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016924, intron 1 of 4)	CpG	182.0	NM_016924	53858.0	Mm.162406	NM_016924	ENSMUSG00000041079	Rwdd2b	ORF5	RWD domain containing 2B	protein-coding	7.05686490930937	7.33360646309966	7.56186844204344	7.40121603530655	7.096110698218	7.22295392809714	7.35303631919805	7.30443304690437	-0.148760744902455	0.446314038859181	0.732070214816399
Merged-chr3-41375374-3	chr3	41375277	41375477	+	973.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	117822.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	4.37071415076525	4.06231785394886	4.87957965248065	4.90479244352884	3.78529711384701	4.05543397048277	4.17393937148873	3.74013430818776	-1.65541079551696	0.000526644581050016	0.00804766737538838
Merged-chr4-132768690-1	chr4	132768590	132768790	+	699.0	f0_balb.idr	exon (NM_011284, exon 2 of 9)	exon (NM_011284, exon 2 of 9)	330.0	NM_011284	19891.0	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	3.7995121506429	3.46317292422058	4.0131297060122	3.17945087796242	3.52410063174009	3.54321501000924	3.47286355086708	3.65044926029882	-0.302978500819455	0.582939348704568	0.816821881334209
Merged-chr5-21188612-4	chr5	21188497	21188697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 1 of 26)	intron (NR_153365, intron 1 of 26)	2330.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	7.76414221007104	7.85962032731756	7.49320538978386	7.8480626567818	7.41870510612854	7.64183744022998	7.58229310957604	7.3151230786518	-0.346676535843707	0.0601696428274273	0.258952476377861
Merged-chr10-18927567-4	chr10	18927467	18927667	+	869.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie2b|DNA|hAT-Charlie	82496.0	NM_022032	64058.0	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	3.52920995677046	3.7289555260381	3.87774953507437	3.75219179423978	4.33180786285485	3.89220350368643	4.04879379978993	4.10781166490306	1.05454422172383	0.0182406092308358	0.120395801598819
Merged-chr17-65680302-4	chr17	65680187	65680387	+	884.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 5 of 6)	intron (NM_133685, intron 5 of 6)	-38083.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	4.62586371983368	4.28268298773893	3.98438069005409	4.54218386022062	4.41726646334237	4.2240044699239	4.80208858671944	4.47037275370005	0.241667880237409	0.562921172172133	0.805927740950101
Merged-chr3-142478554-4	chr3	142478451	142478651	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18383.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	4.73919936961979	5.14534324462661	4.57800821894803	4.55859822583308	4.86437160036353	4.42044720056294	4.85997225160838	4.81064712323177	-0.0338337266439985	0.928072236602846	0.973851277831645
Merged-chr10-30770716-4	chr10	30770644	30770844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 2 of 14)	intron (NM_001358842, intron 2 of 14)	32582.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	6.74122022187423	6.77543898297289	6.72817930639204	7.16623919643979	6.48608691240226	6.44543188099184	6.37062859108173	6.32255078405315	-0.681624137755727	0.0023485085057469	0.026466828203065
Merged-chr12-70913589-4	chr12	70913489	70913689	+	903.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24268.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	4.2227556264411	4.53148393257596	3.78483604720526	4.32878356573509	4.62468017978403	4.30213396278394	4.33647301125089	4.22082479172039	0.323300467249842	0.45649156763639	0.739906295182684
Merged-chr10-88621533-4	chr10	88621433	88621633	+	854.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16381.0	NM_175418	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	3.57642741432113	4.1751739880615	3.6378553928923	3.99175004073994	4.17327434935166	3.75244738700872	3.94544374020845	4.42549873808042	0.617487855065615	0.220450341069714	0.528384511129111
Merged-chr7-143466419-4	chr7	143466298	143466498	+	983.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5348.0	NM_001161624	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	4.59258042324648	4.50322137572687	4.78104890054726	4.67364266473719	4.36619894189759	4.76615958562017	4.68691559228547	4.63012993507303	-0.0698362254766115	0.84522917066673	0.941451408856064
Merged-chr13-34187767-4	chr13	34187653	34187853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 10 of 10)	intron (NM_001033167, intron 10 of 10)	24789.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	6.25497245900317	6.44892932998447	6.61504411121663	6.64424993129975	5.99577332135362	6.54572020469994	6.62483634804491	6.21144970350362	-0.21884887575016	0.383661584874971	0.685509174712643
Merged-chr16-45145340-4	chr16	45145259	45145459	+	913.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028756, intron 5 of 6)	intron (NM_028756, intron 5 of 6)	13314.0	NM_001356453	74102.0	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	4.94648987912638	4.66252900796654	4.73748787761299	5.29507417959753	4.60308243183069	4.36280789770929	4.67689734157464	4.65604072559179	-0.77855715473245	0.0381719017322486	0.195766106592674
Merged-chr6-134863369-4	chr6	134863270	134863470	+	997.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24415.0	NR_074084	14760.0	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	5.44026848175493	4.94886018381581	5.11114028058541	5.10428356786595	5.991390566577	5.75392318171517	5.78665738454524	5.8124921018031	1.18884777791301	1.8588792381214e-05	0.000476976082517098
Merged-chr10-22297435-3	chr10	22297343	22297543	+	953.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-9277.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	3.47100355552825	3.75822276144935	3.96610078732768	3.98005848198016	3.56400239439345	3.45894548159763	3.33448073457002	3.58488724367512	-1.03014153609309	0.0453210919278111	0.217952165551629
Merged-chr11-87127125-4	chr11	87127033	87127233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197987)	promoter-TSS (NM_197987)	58.0	NM_197987	68729.0	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	7.94738929895171	8.26464343121353	7.50272197041111	7.71869476956564	8.08623778072064	8.66472122154222	7.89627952702518	8.02553354067886	0.401757318040139	0.0900851506627383	0.327736822848099
Merged-chr4-129811090-4	chr4	129810977	129811177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9402.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	6.55986090296302	7.05497381648155	6.6102356131142	6.62715187402044	6.88404186155223	6.83418088961651	6.71295761636462	6.60552349749549	0.0543793959697497	0.805928937676214	0.925317663285668
Merged-chr3-95588827-4	chr3	95588725	95588925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177669)	promoter-TSS (NM_001177669)	-109.0	NM_146133	229593.0	Mm.245830	NM_146133	ENSMUSG00000046519	Golph3l	2010204I15Rik|AU015439|AW549227|C77637|Gpp34r	golgi phosphoprotein 3-like	protein-coding	8.3097097473393	8.46605057842864	8.26654151563035	8.45445887409261	8.089892797431	7.99998520853186	7.98512325264373	8.16704120356921	-0.405433972717248	0.0096517155917158	0.0769919829768843
Merged-chr13-12575178-4	chr13	12575074	12575274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026184, intron 2 of 15)	intron (NM_026184, intron 2 of 15)	9291.0	NM_026184	67475.0	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding	5.59214742142253	5.77917467371893	5.86353992388855	5.67076118743543	5.90761219994853	5.53167151049824	5.53756193293919	5.81435671330633	-0.0109701167922284	0.967215365755645	0.988490012786718
Merged-chr4-55350554-3	chr4	55350451	55350651	+	971.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009011, intron 1 of 9)	CpG	509.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	5.13361300722335	5.25153136182919	5.29228837598605	5.21973488011013	5.16714832713706	5.05472500196979	5.10948113015776	5.64687340995035	0.0741831104964098	0.810823865158549	0.926854276252049
Merged-chr19-29414661-4	chr19	29414551	29414751	+	985.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 1 of 5)	intron (NM_021396, intron 1 of 5)	3732.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	5.4814134481034	5.2234792542822	4.85131730395146	5.16891673992915	5.09297450242658	4.86553248380331	4.66429268250583	4.88644413990366	-0.585371390611332	0.0848317876134284	0.316953816821342
Merged-chr13-23697621-4	chr13	23697531	23697731	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178208)	TTS (NM_178208)	827.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	4.88929855815363	4.67195278405817	4.82059947731637	4.93027046492285	4.57001892431	4.58173450027339	4.79758612875344	4.81738180969047	-0.304811923965457	0.36974246730826	0.673919365987264
Merged-chr1-53782518-4	chr1	53782403	53782603	+	917.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133810, intron 1 of 7)	intron (NM_133810, intron 1 of 7)	2712.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	4.15629964129069	3.90288253681481	4.48612896556522	4.25511818189635	3.95033845438775	4.07785409481121	4.42811985071024	4.24492075465803	-0.0816939510704338	0.849912142455186	0.943332237452326
Merged-chr16-33832102-3	chr16	33832005	33832205	+	934.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	2440.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	3.8895600171941	3.73504254426398	3.57173167950352	3.76133960672131	3.95929477381598	3.68869485510029	4.08610583906229	3.56994444264047	0.298617243006647	0.528684250189259	0.785209349980073
Merged-chr10-93310316-4	chr10	93310206	93310406	+	820.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001322265, intron 1 of 4)	CpG	853.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	4.00297636118457	4.036810763694	3.95581071184903	3.77680078833518	3.92116694894615	3.97549249417319	3.8900632600386	4.04711699001782	0.0618364389051156	0.885395436630998	0.956984644600969
Merged-chr8-120709366-4	chr8	120709244	120709444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27014.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	5.5543326642095	5.86870889462147	5.63374434348086	5.21784087669051	5.72679651487216	5.46408980378966	5.47260129251335	5.55139002561002	-0.0172028771493713	0.953892087213098	0.983588075847329
Merged-chr11-73160308-4	chr11	73160204	73160404	+	973.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033321)	promoter-TSS (NM_033321)	-226.0	NM_033321	94045.0	Mm.156893	NM_033321	ENSMUSG00000005950	P2rx5	P2X5	purinergic receptor P2X, ligand-gated ion channel, 5	protein-coding	4.89992493810295	5.06882842780552	5.28865239599067	4.73461659710087	5.42157812028526	5.03918321176039	4.914372104563	5.04019498374035	0.251000723952946	0.461248042692884	0.743056442024124
Merged-chr8-70610280-4	chr8	70610169	70610369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1955.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	8.11906382212797	8.19687461032555	7.93839638814669	8.16351084417194	8.1527601899807	8.227023789527	8.31512204901543	7.8736681979145	0.0523118784385798	0.761566697160087	0.906556667566817
Merged-chr13-41552096-4	chr13	41552021	41552221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54095.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	5.75012249589313	5.8000498552244	5.3224005304528	5.88419904767273	5.79777423781779	5.82529848038806	5.54081641376682	5.84047005286549	0.0588711842399206	0.831169651120266	0.935322338382222
Merged-chr13-23621713-4	chr13	23621616	23621816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178194)	promoter-TSS (NM_178194)	-592.0	NM_178194	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	6.36942055123274	6.21767547791519	6.56005557565007	6.5256405643126	6.22442720409481	6.58425806134828	7.08216964240157	6.67712110100517	0.354629524009855	0.168222225173491	0.460191392541484
Merged-chr2-84715708-4	chr2	84715616	84715816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144887)	promoter-TSS (NM_144887)	-552.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	7.0245348393774	7.54457543928712	7.16410520781125	7.20833308278651	7.49780301030902	7.52915207627463	7.86114311140228	7.46408022285268	0.459955545835567	0.023867771245921	0.143887870713425
Merged-chr19-6341131-4	chr19	6341057	6341257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291787)	promoter-TSS (NM_001291787)	-3.0	NM_009006	26412.0	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	6.98998997709288	6.84168378648005	6.30454661454216	6.28676580933185	6.85801086999859	6.94962033331111	6.76658671750757	6.4703902701975	0.198736519038466	0.439965978135896	0.727500359972934
Merged-chr16-20496810-4	chr16	20496690	20496890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2027.0	NM_172265	224045.0	Mm.233855	NM_172265	ENSMUSG00000003235	Eif2b5	C81315	eukaryotic translation initiation factor 2B, subunit 5 epsilon	protein-coding	5.19899069573535	5.50603043598351	5.0586214601252	5.60750869504544	5.68229954956619	5.04037841325716	5.38782059350566	5.49306490315543	0.0942555203261448	0.770691144178207	0.910265273875382
Merged-chr7-143057365-3	chr7	143057297	143057497	+	827.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-3711.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	3.11807440581529	2.85178490708711	2.95456152075509	2.84779474432625	2.8425275535257	2.87252868950295	2.75800887474008	2.7652316395264	-0.59500452103623	0.336909972200295	0.646769375674115
Merged-chr12-71136566-4	chr12	71136486	71136686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029818)	promoter-TSS (NM_029818)	89.0	NM_001024853	30056.0	Mm.207767	NM_013896	ENSMUSG00000021079	Timm9	2810011L15Rik|Tim10a|Timm10	translocase of inner mitochondrial membrane 9	protein-coding	5.33970273257807	5.421847206262	5.36758465886418	5.09714134989597	4.88534754860662	4.66712964475504	5.17059412046633	4.84377934901328	-0.758516416508773	0.0199972616731888	0.128013648264351
Merged-chr4-109267566-2	chr4	109267466	109267666	+	766.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-12709.0	NM_007943	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	3.53476727562435	3.63194612704886	3.43160958334052	3.21066207523093	3.27848370700098	3.60155707364459	3.11943970589579	2.98557012831239	-0.682583788312597	0.244618983292355	0.555806001588614
Merged-chr4-129058084-4	chr4	129057985	129058185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029219)	promoter-TSS (NM_029219)	-186.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	7.8406566629012	8.28420685538106	7.48007380293698	7.56046299029852	7.9800346343761	8.14738714352583	7.63654847901133	7.76746547383781	0.0874462688176216	0.703510252590629	0.880741625705568
Merged-chr8-88647211-4	chr8	88647080	88647280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145857)	promoter-TSS (NM_145857)	-167.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	6.3678266957055	6.31472171675285	6.43192459416642	6.05753616803897	5.55238993148049	5.57901354672387	5.85121936436286	5.72568924115239	-0.970586703016821	0.000151880950100999	0.0028820938808955
Merged-chr9-123989853-4	chr9	123989749	123989949	+	878.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11441.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	3.51598401115041	3.68110670967164	3.78555139672536	4.01921775842229	3.90580832400068	3.74760735071418	3.50398293811335	3.45362029894934	-0.305820052993587	0.550677961854722	0.798673593705145
Merged-chr9-113743421-4	chr9	113743300	113743500	+	995.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 1 of 39)	intron (NM_001114347, intron 1 of 39)	1927.0	NM_001114347	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	5.08641033764897	5.14967371196644	5.34373234463188	5.77579813876977	5.05361190244377	4.90615821109068	5.40060474203436	5.52818062598592	-0.259358208978211	0.457000003482	0.740295389645434
Merged-chr3-53463244-4	chr3	53463151	53463351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172501)	promoter-TSS (NM_172501)	7.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	6.59030971462813	6.77391626505749	6.77334532079266	6.38627521690549	6.82283912037601	6.83166522451867	6.98075013936403	6.66572220296922	0.289255499181161	0.179277068447196	0.475558645945455
Merged-chr7-27332806-4	chr7	27332707	27332907	+	963.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175641, intron 4 of 32)	intron (NM_175641, intron 4 of 32)	841.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	4.67088935438446	4.63055045847445	4.37184629208403	4.24817556317962	4.85171527930076	4.76641692286493	4.82581672247274	4.62982285588922	0.648101278800067	0.0709321953293927	0.28561875495564
Merged-chr19-61017693-4	chr19	61017611	61017811	+	911.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 2 of 15)	intron (NM_018869, intron 2 of 15)	123129.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	4.73889949790246	4.6211529524124	4.73968954933019	4.54364658823936	4.42252530314241	4.55424510523891	4.57020607800644	4.22903858499833	-0.461465449954746	0.205982790632298	0.509846265410728
Merged-chr2-129472115-3	chr2	129472015	129472215	+	745.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 3 of 6)	intron (NM_177653, intron 3 of 6)	64487.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	3.48833502675155	3.75465110977492	3.3036475396803	3.49513812202946	3.89126162123856	3.48191131131124	3.63588702824295	3.59713618806877	0.463378866099514	0.359516395078169	0.665418974055933
Merged-chr18-34651800-4	chr18	34651709	34651909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178347)	promoter-TSS (NM_178347)	-73.0	NM_178347	52563.0	Mm.196638	NM_178347	ENSMUSG00000024370	Cdc23	6030435O18|D18Ertd243e	CDC23 cell division cycle 23	protein-coding	7.22658933152893	7.21527309245427	7.23869522895691	7.34997677367278	7.17931069572117	7.37130256956468	7.12480765639433	7.09689919049579	-0.0943753138372955	0.605327569499229	0.828809276266572
Merged-chr2-5014824-4	chr2	5014717	5014917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2026.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	5.058403635979	5.1308771854903	5.19703902305638	5.5348150650167	5.28290188360973	5.33948872064916	5.6282759336299	5.19348554115739	0.186627132853043	0.552739806721058	0.799873237323185
Merged-chr4-142079902-4	chr4	142079791	142079991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-4407.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	6.35350416618801	5.96349520409987	6.1189806790151	6.89022368694143	6.37143027327709	5.778376106655	6.30401115536761	6.79687815627192	-0.0483651347078523	0.879857446672343	0.955009601536912
Merged-chr4-132261051-4	chr4	132260941	132261141	+	895.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122992, intron 1 of 10)	CpG	508.0	NM_020273	56809.0	Mm.103489	NM_020273	ENSMUSG00000028901	Gmeb1	1110050A04Rik|AI256615|AI481278	glucocorticoid modulatory element binding protein 1	protein-coding	4.0356978168324	4.08801866778495	4.3883451523505	3.92200803779446	4.20456001271671	3.99756318001971	4.44131766402346	4.1312774430954	0.248795222239575	0.556667876391415	0.802199963024407
Merged-chr3-127896078-8	chr3	127895980	127896180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027482, exon 1 of 2)	exon (NM_027482, exon 1 of 2)	243.0	NM_027482	70617.0	Mm.317049	NM_027482	ENSMUSG00000050549	Fam241a	2700063A17Rik|5730508B09Rik|C80506	family with sequence similarity 241, member A	protein-coding	5.53494129017276	5.44286639953844	5.26590181966585	5.31046356833169	5.49561874892855	5.53887001659726	5.58605116014896	5.96195687176075	0.461180324530526	0.10208744941707	0.350783967080574
Merged-chr17-31093578-3	chr17	31093479	31093679	+	582.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 3 of 14)	intron (NM_009593, intron 3 of 14)	35885.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	3.71450708737708	3.7222171143	3.71507031327806	3.49906248997161	3.40270061398815	3.44612179986932	3.49673720574713	3.26590352525119	-0.852204416486645	0.0940544881354819	0.335476295148992
Merged-chr16-14291452-4	chr16	14291359	14291559	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161775)	promoter-TSS (NM_001161775)	-51.0	NM_013607	17880.0	Mm.250705	NM_013607	ENSMUSG00000018830	Myh11	AV071570|SM1|SM2|smMHC	myosin, heavy polypeptide 11, smooth muscle	protein-coding	4.48798851269327	4.81134880705743	4.2898961537578	4.74196270733524	4.81376280132872	4.83611410352559	5.01802791840994	4.97842436699369	0.613866596266648	0.0851935805701837	0.317769421548242
Merged-chr6-32479331-4	chr6	32479246	32479446	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-31795.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	6.41694100903173	6.40424991513816	6.17549611346139	6.42616876553276	5.47628122548855	6.02793812863255	5.74431767585339	5.57169736083946	-1.03529712942524	5.08343044165462e-05	0.00114806354908944
Merged-chr19-3376199-4	chr19	3376132	3376332	+	887.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 13 of 18)	Lx8|LINE|L1	-12625.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	3.63505316348335	3.87903309625454	4.04797016809918	3.74678083742167	3.71199894950844	3.69228882526111	4.07246975035394	4.24817141547416	0.330208874227833	0.485588176547958	0.759390987993126
Merged-chr4-140701319-4	chr4	140701243	140701443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173867)	promoter-TSS (NM_173867)	-130.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	5.98933906089409	5.62527281589452	5.6877064964203	5.49625842671077	6.06594292324356	5.93981809265477	6.11421569959559	5.57399929929074	0.401482588351828	0.145883715207982	0.425690032582665
Merged-chr13-81657681-4	chr13	81657585	81657785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030257)	promoter-TSS (NM_030257)	-121.0	NM_030257	80289.0	Mm.259969	NM_030257	ENSMUSG00000035840	Lysmd3	1110030H10Rik|BC003322	LysM, putative peptidoglycan-binding, domain containing 3	protein-coding	8.63187732870639	8.80248027315869	8.80824093484823	8.8042589335936	8.71021762509007	8.82002611820867	8.93554305627721	8.62316881816853	0.0134220336730535	0.929497673374189	0.974513777866012
Merged-chr5-35362037-3	chr5	35361928	35362128	+	732.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046060, exon 1 of 4)	non-coding (NR_046060, exon 1 of 4)	475.0	NR_046060	74429.0	Mm.399502	NR_046060	ENSMUSG00000106762	4930478P22Rik	4933405A14Rik	RIKEN cDNA 4930478P22 gene	ncRNA	2.85440714427648	2.98687740284017	3.07806890155218	3.25770228555176	3.61350849545984	3.25948084798688	3.31565220057296	3.91104584215169	1.7202268473203	0.00656208891787748	0.0579723131544745
Merged-chr3-105036514-4	chr3	105036437	105036637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 2 of 5)	intron (NM_030249, intron 2 of 5)	16416.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	5.62109143086477	6.00888682038517	5.78250099503911	6.32777851757772	5.93205307473717	5.98331477108619	5.93861341345575	5.75305237782571	-0.131992879983891	0.636048217888981	0.846003230633997
Merged-chr17-80563919-4	chr17	80563809	80564009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033443)	promoter-TSS (NM_001033443)	-75.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	6.66220685415654	6.65691808115582	6.3100984043853	6.3576942694973	6.79252005820441	6.46808676620358	6.74098083110495	6.16197878314788	0.104383588953098	0.670083787319502	0.863852605321479
Merged-chr6-122601387-1	chr6	122601287	122601487	+	722.0	f1_balb.idr	intron (NM_001134391, intron 1 of 7)	intron (NM_001134391, intron 1 of 7)	1057.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	3.4737336371317	3.83689711427149	3.5904621612669	3.38110475535964	3.59604374073618	3.76347428755142	3.68186160400862	3.8400360806678	0.452249505618501	0.353501145931951	0.66029455787456
Merged-chr3-96268654-4	chr3	96268559	96268759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178215)	promoter-TSS (NM_178215)	5.0	NM_178215	319154.0	Mm.383293	NM_178215	ENSMUSG00000074403	Hist2h3b	H3-615|H3-616	histone cluster 2, H3b	protein-coding	6.82590763259212	6.51771722265555	6.56857035390107	6.29455292259347	6.38425517449086	6.72854015266898	6.56636933348639	6.56387946675903	0.0131256823842722	0.954567082124748	0.983787173349859
Merged-chr6-47319761-3	chr6	47319657	47319857	+	917.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75361.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	3.90911950328003	3.88075221817226	4.21149587786477	3.9651257638053	3.80058307169846	3.69597080434274	3.68454859748707	3.90737706799768	-0.623889786883656	0.166525531238183	0.45787927484848
Merged-chr4-155491278-4	chr4	155491198	155491398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160017)	promoter-TSS (NM_001160017)	-63.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	6.67442461121096	6.54003384033043	6.22659104746563	5.99850639855587	6.71767174168767	6.94843381045701	6.36784406248554	6.61138713035622	0.443184940846584	0.0853197671529642	0.318041894659862
Merged-chr17-73941966-4	chr17	73941852	73942052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 2 of 35)	intron (NM_011723, intron 2 of 35)	8244.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	6.32925547099979	6.27871259253568	6.53080077985293	6.6436808185487	6.41259491736627	6.13204221138625	6.26138505871494	5.8478114583004	-0.408926577164663	0.0990879179877304	0.345108328739475
Merged-chr2-130930153-2	chr2	130930047	130930247	+	888.416626	f0_balb.idr|f1_balb.idr	intron (NM_009730, intron 1 of 28)	intron (NM_009730, intron 1 of 28)	23652.0	NM_009730	11990.0	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	4.45870724166047	4.0426829807731	4.49301720232678	4.73485831796642	3.09175607535994	3.39563811819155	3.41412727363374	3.49544699325527	-3.97082515677873	1.89014958101836e-09	1.1518746320831e-07
Merged-chr14-40933331-6	chr14	40933233	40933433	+	972.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	14876.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	3.57262318721162	3.837192280781	4.1301752619775	4.00475300931046	3.68113653491729	3.97756485834292	3.67964758265569	4.12748354875792	-0.0847043606257415	0.859978940490684	0.947085100029529
Merged-chr10-19504099-3	chr10	19504015	19504215	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152785, intron 1 of 2)	intron (NR_152785, intron 1 of 2)	9472.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	3.26575710937944	3.25165399011387	3.62077605454891	3.07944400874965	3.43171936779135	3.11897785421619	3.25394857240911	3.20481636657253	-0.171927427850395	0.762635432609522	0.907011913026374
Merged-chr13-41596890-4	chr13	41596805	41597005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9311.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	5.6030489215506	5.45984458348443	5.90755473142468	5.83328391569119	5.18352984673932	5.4868684504709	5.7697240939538	5.65176655705425	-0.314757963897213	0.285561494072756	0.597312371341529
Merged-chr9-44685535-2	chr9	44685435	44685635	+	598.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153537)	TTS (NM_153537)	12302.0	NM_001277847	58866.0	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	2.70990864166443	2.83557141027842	2.41229148067971	2.36963707630623	2.76384821528536	3.17593373162539	2.76522226431768	2.77417354986657	1.35675989098374	0.0550676909482552	0.245270206745877
Merged-chr5-33996510-3	chr5	33996394	33996594	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001001985, exon 1 of 3)	5' UTR (NM_001001985, exon 1 of 3)	510.0	NM_001001985	269642.0	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	4.53262245046195	3.9891537510894	4.25277532503676	4.3191610522938	3.37965899055338	3.43668899170489	3.58825468940035	3.93977270747632	-2.02678673463611	8.94211283253959e-05	0.00184865131951012
Merged-chr2-84113817-4	chr2	84113721	84113921	+	932.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-172595.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	6.47023474847722	5.98501106872718	6.24256755140585	6.66440466865192	4.8049996089211	5.12445910073559	4.81427087128326	5.28675946914289	-2.32759500106691	8.84810223799687e-14	1.17281018472696e-11
Merged-chr1-133046100-3	chr1	133045998	133046198	+	880.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099276)	promoter-TSS (NM_001099276)	86.0	NM_001099276	240752.0	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding	4.37900732629786	4.08219280622356	4.14139184409744	3.99875434625555	4.10684368994514	3.58773205804382	3.83238142073408	4.04821769081483	-0.622386566662488	0.177427868651985	0.472806643808905
Merged-chr8-26768351-3	chr8	26768250	26768450	+	806.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56073.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	4.33029915594111	4.07130700728439	4.37110594271121	4.44130835581466	3.89306929747152	3.96261090004358	4.27002668428177	4.15390696116125	-0.619935309768781	0.138853034247225	0.414381792154761
Merged-chr18-14713525-4	chr18	14713437	14713637	+	923.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360823, intron 1 of 5)	intron (NM_001360823, intron 1 of 5)	7386.0	NM_001360823	73677.0	Mm.87277	NM_001163609	ENSMUSG00000036743	Psma8	2410072D24Rik	proteasome (prosome, macropain) subunit, alpha type, 8	protein-coding	4.9104515313421	4.88169038702397	4.62531924891855	5.25544143914864	5.24857047179226	4.89188303821373	4.88787231309202	5.28513265622826	0.265832489573615	0.450850457964363	0.73556167478329
Merged-chr5-115538841-4	chr5	115538735	115538935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-20632.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	7.16295630176432	7.26330936792395	7.10580599023322	7.05917508439005	7.24049803684694	7.20914862830606	7.30796616672672	7.22579830125675	0.137718200159562	0.44329379962406	0.729879993711436
Merged-chr14-46767534-4	chr14	46767430	46767630	+	893.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360041, intron 5 of 7)	intron (NM_001360041, intron 5 of 7)	6989.0	NM_028222	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	5.93587216018021	5.68137786585281	6.10125250397827	6.54747590690399	4.4626833200569	4.49531795057873	4.85204378565238	4.82795732289699	-2.68757123429194	5.08845968790776e-14	7.03284411894343e-12
Merged-chr17-13441119-5	chr17	13441121	13441321	+	917.55835	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-80235.0	NR_030763	272667.0	Mm.444718	NR_030763	ENSMUSG00000079711	Smok4a	4930513D10Rik|Smok2c	sperm motility kinase 4A	pseudo	4.12572646210704	4.20899886357365	4.74377492859271	3.52814422968729	3.22562367554911	3.47487927141904	3.60572296339472	3.34957492190635	-2.46903528474835	4.05918304000903e-05	0.000944519743722795
Merged-chr3-95311231-4	chr3	95311124	95311324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3966.0	NM_029789	76893.0	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	5.09165321623377	5.11967463450151	4.9601644317015	4.4569189520677	4.89448735315608	5.02656486653397	4.97022577295287	5.11999478316222	0.171742588944113	0.627611936078964	0.841247952058539
Merged-chr19-55803302-4	chr19	55803187	55803387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	61477.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	6.09118658008957	5.72323107887968	6.59182004335191	6.46513145673268	5.46657341870989	5.51293093341432	5.95817001941456	5.49255267922547	-1.02684775076272	0.000765568053431568	0.0108637098236056
Merged-chr3-83845368-4	chr3	83845262	83845462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3754.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	7.99671836696032	8.16480861934796	7.87056373250037	7.92169931686743	7.97065340948481	8.07023573197703	7.72390798741813	7.94466612409819	-0.0762350459090377	0.656366428992594	0.85658929556191
Merged-chr4-155481982-2	chr4	155481889	155482089	+	596.833374	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-9372.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	3.93222262668701	3.5952313764576	3.72918062367251	3.76097967041396	3.85659054186705	3.90319717500764	3.96140496511277	4.02107840008883	0.504949510867958	0.252484652533913	0.563762001465317
Merged-chr11-19965465-4	chr11	19965373	19965573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	41031.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	7.37536314971533	7.67100950018911	6.91461806805245	5.67717018135049	7.20849603794349	7.13118324478189	6.90466893876601	5.42364910036197	-0.388547354833731	0.612203560431937	0.832680684364583
Merged-chr15-73643198-4	chr15	73643117	73643317	+	714.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18473.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	3.1119430224897	3.2904967263187	3.17115818446584	3.21139063559134	3.20297130437305	3.09339703442838	2.97705200156302	3.16952044084865	-0.323393338247504	0.562486814405668	0.805707247859895
Merged-chr2-117299113-4	chr2	117299031	117299231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 5 of 16)	intron (NM_011246, intron 5 of 16)	43746.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	6.75231464358891	7.0017055939931	6.56697561817184	6.25542097273096	6.94067630910642	7.10435089638357	6.81592448990767	6.61153367435493	0.309303981669622	0.210744822734711	0.515360763302092
Merged-chr7-24886055-3	chr7	24885952	24886152	+	888.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360125, intron 3 of 5)	intron (NM_001360125, intron 3 of 5)	1139.0	NM_001360115	20085.0	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	3.86782149926784	4.0933786212021	4.2912936625424	3.31676622369645	3.73145422377889	3.64754224643459	4.07801310764504	3.52552307803526	-0.500134770208243	0.363476032536222	0.668574361907056
Merged-chr2-34898036-3	chr2	34897948	34898148	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028716, intron 13 of 14)	intron (NM_028716, intron 13 of 14)	15928.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	3.48096203135775	3.25262549980086	3.32419725407648	3.30692312671758	3.32225153091805	3.49333849789332	3.19611720970178	2.86079218958475	-0.37537979658389	0.522646888890851	0.782003760707179
Merged-chr19-43527304-4	chr19	43527163	43527363	+	915.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2658.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	3.57970025112295	3.62161665803612	3.41023105432797	3.40180698238687	3.7429353371081	3.46213097951086	3.39812848761552	3.81878704352275	0.388909157426881	0.437236679368809	0.725557644444268
Merged-chr1-177521297-3	chr1	177521198	177521398	+	778.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75477.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	3.79300089794733	3.36259836899776	3.64449696518059	3.8766392410992	3.9120800698954	3.46342694050147	3.46353025750332	3.6424617170117	-0.143494344724012	0.784340320580581	0.916033204453207
Merged-chr4-33073164-4	chr4	33073059	33073259	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008076, intron 2 of 8)	B2_Mm2|SINE|B2	10047.0	NM_008076	14409.0	Mm.6227	NM_008076	ENSMUSG00000023267	Gabrr2	-	gamma-aminobutyric acid (GABA) C receptor, subunit rho 2	protein-coding	5.34582816541913	6.25115896946399	5.52875397557217	5.41445395624442	5.52437912044515	5.86281464987703	5.82159741778561	5.27629200067562	-0.0845572184731078	0.802984042613636	0.923965812075785
Merged-chr3-95667453-4	chr3	95667383	95667583	+	951.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	8762.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	3.52393557568679	3.23926092854578	3.32015724302065	2.61683940863281	3.20462433621604	3.19219395482449	3.00006754307432	3.47416954097487	0.0204823590410696	0.975499177978776	0.991324270933399
Merged-chr7-101378078-4	chr7	101377980	101378180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040112)	promoter-TSS (NM_001040112)	-42.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	7.81258542708455	7.93235583167736	7.95614504375778	7.72552014667749	7.80878170678355	7.67618417549523	7.8056977593566	7.29421278808309	-0.246563795162415	0.192200974913232	0.491792119970843
Merged-chr3-107062873-3	chr3	107062788	107062988	+	984.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23384.0	NR_033498	229694.0	Mm.347584	NM_173787	ENSMUSG00000056145	AI504432	A230102G19	expressed sequence AI504432	ncRNA	4.60491165473028	4.26550320323055	4.33918470787983	4.03431957515082	4.12660856903885	4.51046510789119	4.03919519626657	4.20264391011005	-0.212613384080279	0.616120662937405	0.834845587136962
Merged-chr13-98947397-1	chr13	98947297	98947497	+	792.0	f0_balb.idr	Intergenic	Intergenic	-21013.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	3.01035715311557	3.02723412816035	2.83740603164987	3.32027323206714	2.46853938251396	2.50629552042775	2.55737812862366	2.70626562302461	-2.86888510278769	0.000361908213167054	0.00591238574822533
Merged-chr11-104231332-4	chr11	104231230	104231430	+	990.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010838)	promoter-TSS (NM_010838)	-106.0	NM_001038609	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	5.37818944071644	5.72110549391974	5.5216671399952	5.62622601388244	5.54648785865645	5.55432669614591	5.15892362270307	5.37538542462764	-0.263090083546689	0.354646047303272	0.661322758140986
Merged-chr2-167351620-4	chr2	167351539	167351739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2461.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	5.9853419602017	6.17869580492717	5.98639524152204	6.19794261860674	6.3887727624867	6.29128725492565	6.18276817114178	5.88786401879568	0.164914439053428	0.499571869929324	0.768387448003553
Merged-chr7-29768024-2	chr7	29767924	29768124	+	905.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023750)	promoter-TSS (NM_023750)	-528.0	NM_023750	74352.0	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	3.01397317511918	2.91552272923088	2.88541691640944	2.85940524392706	3.17092908626363	3.24332239494527	3.00359305919762	3.12995193019187	0.930361864608008	0.100492733406554	0.347974911030606
Merged-chr13-95881592-2	chr13	95881499	95881699	+	679.666626	f0_balb.idr|f1_balb.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	10323.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.06473205386077	3.07018416407693	3.01200194337019	3.19942135889778	2.46575882243074	2.50458576089225	2.55584034614847	2.56114620936682	-3.56737386707092	6.2033355357429e-05	0.00135804147449699
Merged-chr9-78448668-2	chr9	78448568	78448768	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026658, intron 1 of 11)	CpG	458.0	NM_026658	68291.0	Mm.291779	NM_026658	ENSMUSG00000032342	Mto1	2310039H01Rik|5730419A02Rik	mitochondrial tRNA translation optimization 1	protein-coding	4.49360688890752	4.75840635463173	5.04746953775362	5.17518319833378	4.93515446924644	4.81282405363482	5.05413123607361	5.16608107154728	0.166950995708069	0.639438398245384	0.847607151813091
Merged-chr1-34481008-4	chr1	34480894	34481094	+	991.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17418.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	5.18513962968736	4.7886466834407	5.18602069066052	5.04772113365834	5.577597637078	5.3289442588074	5.57353326539872	5.5000916449656	0.8098949469204	0.00572923622482763	0.052538173827236
Merged-chr11-54627157-4	chr11	54627058	54627258	+	872.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 11 of 28)	intron (NM_001252494, intron 11 of 28)	31012.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	4.16206222341658	4.80197254573497	4.2125159817516	4.00496470345502	4.59563571183149	4.72442606249222	4.2417777296775	4.10851175669195	0.260101293181662	0.563784376511983	0.806486928766928
Merged-chr14-21742039-4	chr14	21741960	21742160	+	910.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007268, intron 5 of 7)	intron (NM_001007268, intron 5 of 7)	819.0	NM_013849	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	4.58952975294893	4.28287429937633	4.47044215765066	4.40972244336775	4.77659229008169	4.60087409484265	4.27259076476935	4.46759797273728	0.258919199716708	0.49267900980216	0.763658218913778
Merged-chr12-32745970-2	chr12	32745870	32746070	+	940.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-74365.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	3.26299819058562	3.37942560233982	3.15567628809327	3.01745181253603	2.97524917906765	3.08459883334332	2.68265420155876	2.90736823908664	-1.2101717324883	0.0575067103206466	0.251661244015574
Merged-chr17-63871859-4	chr17	63871732	63871932	+	874.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	RMER1B|Other|Other	-6234.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	4.12680918512324	4.05516111306475	4.22417292423042	4.61193960366736	4.26329238941693	4.30285373835765	4.15890185605482	4.61808032032095	0.123109528674225	0.773839165796046	0.91166330938482
Merged-chr11-3173306-1	chr11	3173206	3173406	+	1000.0	f1_balb.idr	intron (NM_030207, intron 6 of 32)	B1_Mur2|SINE|Alu	20157.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	4.8240624048257	4.38816872213534	4.8527148029332	4.69616390909584	3.2335871049204	3.51300305180729	3.37475093466868	3.67670546245346	-4.22581702635602	7.23989840290064e-11	5.66295305956115e-09
Merged-chr4-53799494-3	chr4	53799384	53799584	+	962.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19779.0	NM_009317	21350.0	Mm.56955	NM_009317	ENSMUSG00000028417	Tal2	bHLHa19	T cell acute lymphocytic leukemia 2	protein-coding	4.04448821191095	4.19421096765854	4.38984206031045	4.7872827547617	3.6690749267456	4.06703754304859	3.97784126159207	3.57530782664106	-1.50868011608136	0.00200138170335437	0.0234123013482747
Merged-chr12-91748381-4	chr12	91748289	91748489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	38047.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	8.10401755649758	8.20434313036871	8.64492437167589	8.49517705990482	7.87833222291428	7.85876054537292	8.34196250219336	8.05414273942567	-0.428120295823938	0.0313598142235488	0.172455489489852
Merged-chr3-103912896-2	chr3	103912788	103912988	+	731.25	f0_balb.idr|f1_balb.idr	TTS (NM_008979)	TTS (NM_008979)	-1232.0	NM_001356557	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	3.70788408002091	4.40108926398652	4.26702452672518	4.15633034789919	3.56269716128813	3.76911046493134	3.63551863686457	3.70639207000777	-1.43098592558185	0.00314548900567824	0.0331545627032684
Merged-chr15-51848620-4	chr15	51848519	51848719	+	638.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080635, intron 1 of 7)	A-rich|Low_complexity|Low_complexity	16842.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	3.52723573126044	3.29984214403461	3.69089212113864	3.527025443298	3.99116685818769	3.70174440771431	3.77263513818722	3.58244619755969	0.806752342190018	0.0985561864843085	0.344072669754539
Merged-chr19-12441678-3	chr19	12441586	12441786	+	978.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13781.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	3.62634531967777	3.49911216225915	3.62681406814752	3.38314143121675	5.04332373713959	5.01790569745827	4.43038970123036	5.1864834369173	3.5895362878163	6.2623191458032e-15	9.99429628876964e-13
Merged-chr3-136671076-9	chr3	136670892	136671092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	CpG	926.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	5.14440127424353	4.97295223081187	5.49707849788251	4.86450884387082	5.2526000484843	5.28789919603993	5.36316117026253	5.68238124585003	0.511147761802997	0.113476193312349	0.372473895607002
Merged-chr17-46388429-4	chr17	46388323	46388523	+	927.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021346, intron 2 of 7)	intron (NM_021346, intron 2 of 7)	4657.0	NM_021346	57908.0	Mm.439916	NM_021346	ENSMUSG00000015597	Zfp318	2610034E08Rik|D530032D06Rik|TZF|Znf318	zinc finger protein 318	protein-coding	4.78688394223409	5.04223362047681	4.63214874272861	4.86452677570662	4.82243741300449	4.67839350751534	4.80083571094724	4.50036311330647	-0.277828316629232	0.422375225734507	0.714658319686139
Merged-chr6-85587525-4	chr6	85587373	85587573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145223)	promoter-TSS (NM_145223)	-58.0	NM_145223	236266.0	Mm.246967	NM_145223	ENSMUSG00000063810	Alms1	bbb	ALMS1, centrosome and basal body associated	protein-coding	6.3940861449289	6.88105200135079	6.45097738479827	6.67468618000014	6.92457876052028	6.84418973471413	6.90660831486865	6.67817781450847	0.313896879310089	0.149006423781952	0.430985746612036
Merged-chr8-90793908-3	chr8	90793817	90794017	+	675.511108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34918.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	3.36791366448636	3.34166734039932	3.52339847012786	3.26452284788134	3.33406689418129	3.16787818867405	3.24162329064437	3.47202307492023	-0.216806991184385	0.682818212131932	0.87004256061972
Merged-chr8-125012944-4	chr8	125012783	125012983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016909)	promoter-TSS (NM_016909)	-114.0	NM_016909	53424.0	Mm.5248	NM_016909	ENSMUSG00000056820	Tsnax	R74833|Trax	translin-associated factor X	protein-coding	6.54872611569498	6.52442268779506	6.74191370594188	6.66581873213876	6.43287803639437	6.46151531011148	6.53220092273088	6.08881368163575	-0.341478630120417	0.122349091363741	0.387588637323531
Merged-chr2-122138014-2	chr2	122137914	122138114	+	697.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026251, intron 2 of 17)	intron (NM_026251, intron 2 of 17)	-9673.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	3.03982899782536	3.15208362984455	3.16345617014357	2.86184256220789	3.19679783392553	3.21476949026386	3.41267822697362	3.10170867247499	0.73237079713575	0.194035447966746	0.494371233519167
Merged-chr4-108579342-4	chr4	108579252	108579452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172697)	promoter-TSS (NM_172697)	-16.0	NM_172697	230596.0	Mm.157534	NM_172697	ENSMUSG00000063800	Prpf38a	2410002M20Rik	PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	protein-coding	7.68414950908596	7.95450849249645	7.33595112553276	7.47324884902257	7.75510780449086	7.86274884172416	7.71196113626793	7.63831472143751	0.147318076967079	0.454642767009893	0.738427719663014
Merged-chr17-10319306-4	chr17	10319216	10319416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159517)	promoter-TSS (NM_001159517)	45.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	5.4444432404411	6.12151454511268	5.27718145639831	5.7103810788863	6.13444404101547	5.90421264270153	6.24226717470036	5.44158982192029	0.457341422782319	0.160026584156839	0.447864280018072
Merged-chr11-83562440-3	chr11	83562318	83562518	+	879.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16218.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	3.56547007891167	3.55751211121476	3.40366332622726	3.33557395250861	3.6804920099514	3.26090757842795	3.3910687442515	3.51216000366806	0.0568671991253775	0.91261691825195	0.967264759221129
Merged-chr12-99965172-4	chr12	99965072	99965272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164427, intron 1 of 2)	intron (NM_001164427, intron 1 of 2)	673.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	5.42764247137152	5.09498931282727	5.70702154286602	5.68905804457342	5.34038229226922	4.87211189699245	5.65505919687943	5.4247763728608	-0.267946338795967	0.42043939803053	0.713274332060183
Merged-chr16-38632242-3	chr16	38632150	38632350	+	772.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 3 of 11)	B3|SINE|B2	69436.0	NM_026407	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	3.07696486581637	3.0787525244821	2.8777236979437	2.84737050322363	3.31318794375772	3.4184103820925	3.12585525423047	3.13609219445404	1.14291491111644	0.0435935197350196	0.212505834285952
Merged-chr12-16634214-3	chr12	16634119	16634319	+	798.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19251.0	NM_001361702	18217.0	Mm.281715	NM_008747	ENSMUSG00000020591	Ntsr2	NT-R-2|NT2R|NTR2|NTRL	neurotensin receptor 2	protein-coding	4.50449004694511	4.43021411774996	4.50530614380397	4.52060578949927	3.20758515173809	3.32682636917024	3.42795263943588	3.36320369906413	-4.30659870972452	3.67207596889948e-10	2.5650117310137e-08
Merged-chr1-156568314-1	chr1	156568214	156568414	+	738.0	f1_balb.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	9527.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	2.67417906032508	2.53704213405705	2.60377605515059	2.54942166129023	2.94798028615997	2.91450277005866	2.85536546869758	3.0318083562703	1.67684989138868	0.00725287939885977	0.0624927614975717
Merged-chr19-9122626-4	chr19	9122531	9122731	+	992.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025610, intron 2 of 6)	RLTR49|LTR|ERVK	12935.0	NM_025610	66514.0	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	6.27931300895863	6.65250337399493	6.50741463101027	5.96518086767199	6.01159616102976	5.70840157605321	6.03657933881692	5.35115017414007	-0.863879009171926	0.00375768580500004	0.0381334927165808
Merged-chr10-19527516-3	chr10	19527407	19527607	+	763.955566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	32864.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	4.06930878006821	3.57248425279578	3.5512672418763	3.73016555544252	3.84400597104881	3.4798048870653	3.21559434159906	3.90261204342103	-0.305806551531421	0.581409175732081	0.816254905708753
Merged-chr2-35327077-4	chr2	35326970	35327170	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	9939.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	4.95989588529609	5.31053687580002	5.2894173840526	5.33936989270684	5.22861823863337	4.85067309445355	5.17385308152854	5.19585068800995	-0.213603570563027	0.491862520063266	0.76321682759817
Merged-chr7-14533664-3	chr7	14533571	14533771	+	926.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045120, intron 12 of 12)	intron (NR_045120, intron 12 of 12)	28500.0	NM_001244031	627280.0	Mm.372763	NM_001039146	ENSMUSG00000100586	Vmn1r90	B430211C08Rik	vomeronasal 1 receptor 90	protein-coding	3.87394716496713	4.03275031871872	4.02810339170441	4.33683060743199	4.38434727309927	3.93906024919766	3.91199353408543	3.97659952249316	-0.0343338333406239	0.939868043629622	0.978339682326891
Merged-chr4-49518636-3	chr4	49518550	49518750	+	832.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178603, intron 1 of 1)	MTD|LTR|ERVL-MaLR	2433.0	NM_178603	28028.0	Mm.30052	NM_178603	ENSMUSG00000044018	Mrpl50	AA408971|AI317351|D4Wsu125e	mitochondrial ribosomal protein L50	protein-coding	3.1355554381718	2.92164895637096	3.19340737816644	2.87622321492803	2.94003570386569	3.12297456863622	3.18077419048734	3.48463303934543	0.665128894067698	0.263469132447256	0.57547974567386
Merged-chr5-143056719-4	chr5	143056611	143056811	+	974.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	56309.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	5.4872570782517	5.28093087848502	5.61416604731326	5.6383289319638	5.34901554354494	5.07251120850428	4.9489459486467	5.43023958442967	-0.528462678520987	0.0826753007396905	0.312292562176446
Merged-chr11-117196897-3	chr11	117196777	117196977	+	876.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2784.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	3.80896119380701	4.18832012653059	3.86100360247623	4.29825619418528	3.90505618140578	3.56508434048449	3.74128189031282	3.69797092609966	-0.931816321340231	0.053250407382252	0.240705548922092
Merged-chr2-121450248-4	chr2	121450180	121450380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001025371)	TTS (NM_001025371)	1082.0	NR_110986	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	5.21001875201257	5.43447731898187	5.33819338516029	5.31056034274248	5.32392500153026	5.59953539790901	5.2501543787047	5.69962644496806	0.26177554471724	0.364920704802694	0.669640641603313
Merged-chr9-64018982-7	chr9	64018845	64019045	+	886.078247	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 1 of 3)	intron (NM_008542, intron 1 of 3)	3114.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	3.33940133736381	3.51290225168269	3.87688651541725	3.5653216289597	3.44398989617592	3.324672654952	3.3864730284387	3.21118455333182	-0.812257375401283	0.129915970132716	0.401218710433729
Merged-chr2-27237523-2	chr2	27237423	27237623	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138665, intron 6 of 20)	intron (NM_138665, intron 6 of 20)	9780.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	3.58197691087303	3.34878577260553	3.58251375116977	3.06739325939418	3.57805916259241	3.2211124382855	3.35420376946693	3.58034261903213	0.151730662921032	0.78504484483249	0.916374873074418
Merged-chr7-16399218-4	chr7	16399147	16399347	+	904.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1949.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	3.70872089711765	3.76804696868248	3.76583376003285	3.75845974463886	4.03425651243077	3.99439396234786	3.80463459988441	4.36951657272142	0.870645958753145	0.0500936621412304	0.232045866038698
Merged-chr16-64876989-4	chr16	64876930	64877130	+	778.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	25029.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	3.5823608742216	3.24610397801417	3.58286035580369	3.97538150287043	3.28335600080579	3.64492466109095	3.56841442756087	3.58084027600863	-0.363958548371894	0.507938723873975	0.773146987545967
Merged-chr18-39544383-3	chr18	39544281	39544481	+	643.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57136.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	3.86272355543201	4.44472207805222	3.64751710956041	3.58582349517084	3.88710786915362	3.9348920158929	3.7444181291202	3.38909070682181	-0.498299244342726	0.360724200657166	0.665956879382999
Merged-chr5-149272674-4	chr5	149272573	149272773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308462, intron 2 of 3)	intron (NM_001308462, intron 2 of 3)	7669.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	5.62717812139672	5.21305123425476	5.60252892989543	5.95248503647123	5.24471793138834	5.42494668864648	5.59964671446239	5.72169022132658	-0.234328168929767	0.452686982579404	0.736953245043098
Merged-chr14-25861980-4	chr14	25861883	25862083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	19828.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	7.13585699232312	7.23282573179462	7.18237790185559	7.28431455623425	7.0532540856439	7.10137029956064	7.1899238996155	6.94612392081196	-0.193003506359265	0.29280303273998	0.605239641858547
Merged-chr6-50312802-4	chr6	50312703	50312903	+	763.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027881, intron 15 of 21)	intron (NM_027881, intron 15 of 21)	-51034.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	4.33259186489066	4.35159520944397	4.2371636363296	4.52446730706184	4.78662823589915	4.46175410555192	4.48564931003473	4.61924073734811	0.502845090953486	0.17848629953937	0.474282728191057
Merged-chr15-88128622-3	chr15	88128541	88128741	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186233.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	7.89630734315294	7.559558660459	7.99505190845086	8.14050626268301	3.99899962204055	4.54488129319454	4.49624014344111	4.51562711785727	-8.14743017133071	1.91981186680882e-27	1.68704060330352e-24
Merged-chr11-97884192-4	chr11	97884073	97884273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081435)	promoter-TSS (NM_001081435)	-19.0	NM_001081435	72973.0	Mm.245939	NM_001081435	ENSMUSG00000070336	Fbxo47	2900052P03Rik|Gm1562	F-box protein 47	protein-coding	7.54175338215817	7.60246405403498	7.15369284607177	7.15025429500532	7.66366355368941	7.47822665719056	7.47024270476265	7.27428278509743	0.147893970552512	0.471363157869704	0.749827406573597
Merged-chr6-87451221-3	chr6	87451110	87451310	+	620.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22216.0	NM_009756	12154.0	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	b2b2711Clo	bone morphogenetic protein 10	protein-coding	3.04268437747586	2.88760422846435	3.04307746839712	3.02530643157189	2.92636446087059	3.02904185897692	2.9733654715133	2.98240443495236	-0.109609483915212	0.849450853058723	0.943128665229694
Merged-chr5-134231647-4	chr5	134231524	134231724	+	966.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1999.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	5.35194548150469	5.34371054283436	5.56193325330768	5.73052215727089	5.00028647068664	4.88461039297339	5.20772733642677	4.83078433434005	-0.977404468694121	0.00176235611530968	0.0212042252265103
Merged-chr4-55814985-4	chr4	55814876	55815076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-282501.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	5.9774186078546	5.88501527548869	5.44822484215598	6.26974256990388	6.02928814666907	5.89153570787715	5.88154467139807	6.15545374961418	0.0736007417706249	0.795045627226062	0.920725521050451
Merged-chr5-64160291-4	chr5	64160243	64160443	+	923.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310611)	promoter-TSS (NM_001310611)	83.0	NM_001310611	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.11976626932757	3.82628148723686	4.12040692568059	3.87108338789616	4.06512621656402	4.00217683532386	3.75637497654748	4.16073651288899	0.0685482689679457	0.875476809899105	0.953217111662346
Merged-chr18-67278648-4	chr18	67278538	67278738	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10585.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	4.90861178505974	4.7831921288096	4.50437137117425	4.82918832460711	4.95074074865847	4.93658643540866	4.9197469281921	5.03777538933219	0.383322569333003	0.241099996991085	0.551663395619392
Merged-chr3-127789505-1	chr3	127789405	127789605	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_145133)	promoter-TSS (NM_145133)	-367.0	NM_145133	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	3.86048469814723	3.79919910293849	3.96098777367814	3.31660536276751	3.9561694585823	4.22442489916144	3.7378667297546	4.21829967186015	0.844639798005901	0.0866541333729039	0.321147274776108
Merged-chr13-21179556-2	chr13	21179456	21179656	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009054)	promoter-TSS (NM_009054)	-375.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	4.08657091416625	3.6529511686625	3.84525963382316	3.87724166394259	3.93865282754553	3.79529035901116	3.88113269068171	4.42869487676107	0.441764115165269	0.342480808619196	0.651524520972465
Merged-chr19-46132459-4	chr19	46132406	46132606	+	848.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007703, intron 1 of 3)	(CA)n|Simple_repeat|Simple_repeat	607.0	NM_007703	12686.0	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	3.43396438035963	3.25660120762868	3.2117940058171	3.38445314380944	3.02798762475063	3.32344720371452	3.31499701637065	3.32614201526443	-0.296853372541047	0.585522451478215	0.818172766912737
Merged-chr17-57290977-4	chr17	57290875	57291075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	11875.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	6.74764210167361	7.26242111131987	6.86173254767343	6.52920910443129	7.12786399365111	7.1037908099599	6.45411450044967	6.60368553170152	-0.0178804367998396	0.946171989667407	0.980814540550536
Merged-chr7-116490723-4	chr7	116490633	116490833	+	751.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	-13636.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	3.85349969745178	3.71118879535382	4.00309168207407	4.04981459392283	3.97028346002131	3.6781972263357	4.15867315365875	4.17531017570377	0.251403323905565	0.579514192274407	0.815384290230806
Merged-chr11-115209385-4	chr11	115209280	115209480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 8 of 9)	intron (NM_001033393, intron 8 of 9)	21893.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	6.23795853908409	5.88582483815529	5.95566368491304	6.33946059977891	6.59939132935729	6.64537592110864	6.35366826855119	6.48195596968913	0.584820504874194	0.0149009211477179	0.104331365962366
Merged-chr10-75932427-4	chr10	75932304	75932504	+	896.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175329)	promoter-TSS (NM_175329)	98.0	NM_001306184	17385.0	Mm.4561	NM_008606	ENSMUSG00000000901	Mmp11	MMP-11|SL-3|ST3|Stmy3	matrix metallopeptidase 11	protein-coding	4.18264886498738	4.62635927206383	4.66867059595119	4.37536917058087	3.78994812204899	4.20845468665513	3.95513572155083	4.6654282933631	-0.673192346676007	0.145086274298321	0.42438957500946
Merged-chr9-110678200-4	chr9	110678113	110678313	+	974.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	RLTR28|LTR|ERVL	21710.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	5.41116816057092	5.37336213530468	4.9093899564692	5.33467734276282	5.46104017143339	4.96406509461012	5.61060299062495	5.38033052299657	0.18585468255111	0.558624491753433	0.803303359218534
Merged-chr8-57488617-4	chr8	57488507	57488707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021788)	promoter-TSS (NM_021788)	644.0	NR_126555	78353.0	Mm.426240	NR_126553	ENSMUSG00000096917	2500002B13Rik	-	RIKEN cDNA 2500002B13 gene	ncRNA	6.54486930330321	6.66428303691982	6.28388727055373	6.39851503206465	6.53565912069386	6.42143726236888	6.39757672239501	6.27940115430521	-0.0899487175803592	0.685452691417714	0.871409613223223
Merged-chr3-90265709-4	chr3	90265626	90265826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201407)	promoter-TSS (NM_201407)	491.0	NM_001356483	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	8.87250718802178	9.22413696540758	9.20026543927722	9.01168629482063	8.95085567587521	9.08664483903938	9.15996301520681	8.76609931877662	-0.106342423637676	0.518470105694133	0.77953711493731
Merged-chr6-120666845-2	chr6	120666745	120666945	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128151, intron 1 of 18)	CpG-12437	424.0	NM_001128151	330409.0	Mm.333357	NM_001128151	ENSMUSG00000071226	Cecr2	2610101O16Rik|2810409N01Rik|Gtl4|mKIAA1740	CECR2, histone acetyl-lysine reader	protein-coding	3.13488574583727	3.30192207080316	3.0106351091397	2.89034057480898	2.81537729043579	3.12212942369814	3.12331915311714	3.44788640907071	0.211499298772147	0.730286058556045	0.893000516342052
Merged-chr10-99133482-4	chr10	99133421	99133621	+	868.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 4 of 12)	intron (NR_153333, intron 4 of 12)	25386.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	3.82857308982853	4.08047253620813	3.88480765424415	4.55256231549405	3.97067832408484	4.06045942103572	4.06903876731426	4.1742557043546	-0.194871093622373	0.677669032822564	0.86777801477479
Merged-chr13-113556699-4	chr13	113556603	113556803	+	947.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-53859.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	4.57946531703038	4.45765354182021	5.18056893093059	4.22982738800036	4.43422105222544	4.37509103691649	5.1001811992602	5.06622745332935	0.272054442624911	0.539524045528137	0.792267330348392
Merged-chr9-103229339-4	chr9	103229200	103229400	+	900.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133977, intron 1 of 16)	intron (NM_133977, intron 1 of 16)	986.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	3.49404641965377	3.60157391750154	4.07706233323376	4.04345654654995	3.7286017222364	3.67764695766058	3.97101888358223	4.27068058279145	0.266070755929245	0.603875150221901	0.828350269166784
Merged-chr6-141048455-1	chr6	141048355	141048555	+	764.0	f0_balb.idr	Intergenic	Intergenic	-200814.0	NM_018779	54611.0	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	3.25254756935617	2.98386812807447	3.14235382682338	3.29920240079797	2.98418288591626	2.99450847535831	3.13068055257232	3.14072119586305	-0.475674658089205	0.407813161223983	0.70400982253497
Merged-chr15-79514130-3	chr15	79514028	79514228	+	762.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2280.0	NM_134090	105785.0	Mm.298199	NM_134090	ENSMUSG00000010830	Kdelr3	AI173274	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3	protein-coding	3.70562439315944	3.89798652691421	3.60420472328649	3.47578261374069	3.78836917315839	3.20405515282843	3.53624088294411	3.49163549952998	-0.459018418176083	0.393467336925802	0.692576805225404
Merged-chr14-75845849-4	chr14	75845720	75845920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045294)	promoter-TSS (NR_045294)	564.0	NM_009429	22070.0	Mm.297482	NM_009429	ENSMUSG00000060126	Tpt1	TCTP|Trt|p21|p23	tumor protein, translationally-controlled 1	protein-coding	7.27131647946084	7.51761207900715	7.46794290576441	7.41708567397326	7.59996981267041	7.74557809963599	7.47760850962153	7.63167994460788	0.255260919146212	0.143475473998256	0.42182435855639
Merged-chr7-80775450-4	chr7	80775388	80775588	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	B3|SINE|B2	27843.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	4.76011502865869	5.08783081557122	4.84344164431657	5.20153784876748	5.30420450067116	4.98140428656883	5.03910045130834	5.50880729625971	0.425412751471533	0.203792841076421	0.506815330714963
Merged-chr12-40656092-4	chr12	40655978	40656178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 8 of 52)	intron (NM_172803, intron 8 of 52)	210025.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	6.422387596778	6.47474855824096	5.91971746934413	6.60258050617971	6.55790189728627	6.66637695755621	6.28272251506012	6.43612071063136	0.14629902467391	0.555714077137925	0.801653202071264
Merged-chr7-80860911-4	chr7	80860821	80861021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1187.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	7.72720302460027	7.52753673295536	7.30895279346043	7.53114961878515	7.59170008843817	7.65797837835027	7.47179284265419	7.41766437309153	0.00911057289744521	0.960039330607284	0.985737682958271
Merged-chr14-77825297-4	chr14	77825204	77825404	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025384)	TTS (NM_025384)	-26336.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	5.81236111111361	5.1983346602803	5.65805886309845	5.43565519147833	5.04311501350193	5.78244026169938	5.0783989784447	5.13563395012158	-0.442175193916852	0.190938801202492	0.490311892807621
Merged-chr13-117031842-3	chr13	117031740	117031940	+	967.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6324.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	4.18439811337394	4.50563085914091	4.31383739953201	4.20833576082312	3.99046071648839	4.1660144450088	3.86610282769615	4.03944452108419	-0.748654911647436	0.072228632307454	0.288805410261709
Merged-chr12-85344425-3	chr12	85344317	85344517	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-5055.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	3.97599945880598	3.96656128443423	3.9183617289137	3.34077280814747	4.62807432130645	4.58684366484891	4.64791926240304	4.85508329625308	2.2194963688025	3.90377326056227e-07	1.48037654189431e-05
Merged-chr2-173784563-4	chr2	173784467	173784667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019806)	TTS (NM_019806)	46996.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	7.120186557632	6.83048559750827	6.879623740261	7.32633707208275	6.64515815451293	6.55795782837613	6.90940976709686	6.54080762929226	-0.553944210458951	0.01332840957333	0.0967077334373145
Merged-chr12-73779412-4	chr12	73779297	73779497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121927.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	8.37732713563714	8.54655223766142	8.50526568847317	8.32267982298391	8.26272364713292	8.44495209712605	8.50380870889175	8.26764386073554	-0.0841737025875446	0.595173762503513	0.823783168849173
Merged-chr11-70254174-4	chr11	70254107	70254307	+	949.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007440, intron 2 of 13)	intron (NM_007440, intron 2 of 13)	1163.0	NM_001331118	11684.0	Mm.12286	NM_007440	ENSMUSG00000000320	Alox12	9930022G08Rik|Alox12p|P-12LO	arachidonate 12-lipoxygenase	protein-coding	4.3996556242147	5.240298514401	4.62976573903844	4.41374588599937	4.9079591729107	5.1960049442664	4.522095074992	4.8217421582913	0.335620433971325	0.412898270235932	0.707875069079333
Merged-chr2-155956456-4	chr2	155956386	155956586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001129999)	promoter-TSS (NM_001129999)	-72.0	NM_001129999	16328.0	Mm.288729	NM_008383	ENSMUSG00000038241	Cep250	AW490617|B230210E21Rik|Cep2|Inmp	centrosomal protein 250	protein-coding	5.92502042429748	5.60488248999368	5.18646362790411	5.48134802063737	5.79522546405485	5.47278838812093	5.832225741735	5.94236734517698	0.339334564902444	0.246933100854705	0.558168726560377
Merged-chr12-76369557-4	chr12	76369462	76369662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172104)	promoter-TSS (NM_001172104)	-2.0	NM_028356	109929.0	Mm.41880	NM_028356	ENSMUSG00000056459	Zbtb25	2810462M08Rik|2900064P18Rik|AI842128|Kup|Zfp-50|Zfp50	zinc finger and BTB domain containing 25	protein-coding	7.80945246114971	7.9451726374292	8.20389832218586	7.85902336055393	7.96285036288687	8.0344580490379	8.22084129665559	7.67355240232808	0.0354662422200669	0.85173261607736	0.944100387750672
Merged-chr6-5401564-4	chr6	5401448	5401648	+	914.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355662, intron 2 of 4)	Lx8|LINE|L1	11138.0	NM_001355662	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	4.13632316829771	3.84426162081165	4.04696494136489	4.19876485239281	4.16746521912384	3.72519577638014	4.11848073149077	3.89663075962143	-0.190945143590851	0.667908411592491	0.862783023699855
Merged-chr11-85164578-2	chr11	85164478	85164678	+	812.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD3|LINE|L1	-6518.0	NM_028589	73634.0	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	3.76273590706707	3.47880760451007	3.28452493280742	3.12365550414229	3.61541849786654	3.52291579442686	3.45092556372903	3.51743428718755	0.354678449458643	0.508837683802215	0.773801595850059
Merged-chr4-89458081-4	chr4	89457995	89458195	+	976.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132431, intron 7 of 9)	intron (NR_132431, intron 7 of 9)	-147063.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	5.00082669886749	5.49032101945875	5.78539718584036	5.71159377699143	5.12697372194965	5.06278778305627	5.4259188374168	5.0732747548616	-0.642925904873933	0.0489014817769965	0.228636269798006
Merged-chr1-134494599-4	chr1	134494521	134494721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145510)	promoter-TSS (NM_145510)	-39.0	NM_145510	98710.0	Mm.198119	NM_145510	ENSMUSG00000042229	Rabif	AI842864|AW549708|E130318E12Rik|MSS4|RASGFR3	RAB interacting factor	protein-coding	8.04302719633078	8.01738579221401	7.63531135332323	7.75131892186215	7.87746874193354	8.21538681142804	8.11089123410296	7.78965911524088	0.175586502652558	0.353989316438461	0.660825239444339
Merged-chr1-58031377-3	chr1	58031297	58031497	+	730.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009676, intron 1 of 34)	intron (NM_009676, intron 1 of 34)	1428.0	NM_009676	11761.0	Mm.26787	NM_009676	ENSMUSG00000063558	Aox1	AI196512|AI255253|Ao|Aox-1|Aox-2|Aox2|Moro|Ro	aldehyde oxidase 1	protein-coding	3.44825043029304	3.36678887529266	3.39444378795008	3.23592842267377	3.44363558928637	3.45107014685565	3.2058217908426	3.44678582070739	0.13183856868554	0.798467502268124	0.922050695005043
Merged-chr11-100355483-4	chr11	100355351	100355551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359052, intron 1 of 12)	CpG	677.0	NM_001359052	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	5.01993542767534	5.0403335519821	4.91819631433479	5.02682686468555	4.71850867503799	4.90297186153341	4.85889680381582	5.04974775398795	-0.249609872499805	0.433239952362467	0.722830392839943
Merged-chr7-90131872-7	chr7	90131767	90131967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	1654.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	4.35543600781094	4.63347455721618	4.62841138058619	4.17116769917094	4.76848494983217	4.76356146679813	5.20869814293976	4.98057141995347	1.05047362479497	0.00422929064115887	0.0418909686508038
Merged-chr12-79613736-7	chr12	79613559	79613759	+	951.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	311074.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	3.69225318772875	3.65389454511466	3.57732512465683	3.99552905026019	3.74483818967354	4.19680755274727	3.67835431141945	3.79664074238883	0.317273467167467	0.517911049102906	0.779126927276672
Merged-chr8-70695891-4	chr8	70695821	70696021	+	952.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1818.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	4.37870419707062	4.74029084077842	4.56350032932043	4.85545384909364	4.86637549391047	4.82001881634389	4.81036741139812	4.72167081748028	0.294098851292913	0.404839648919488	0.701906790335662
Merged-chr9-63793869-4	chr9	63793796	63793996	+	910.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35902.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	4.61060827618304	4.49815753451092	4.04818587600516	4.67023203287437	4.21571432160897	4.17303823082707	4.31958824990397	4.15005410718932	-0.654804159562029	0.109316108157316	0.365153157665133
Merged-chr7-127777061-4	chr7	127776951	127777151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178029)	promoter-TSS (NM_178029)	-338.0	NM_178029	233904.0	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	6.60636899327314	6.66837249790924	6.26652136412649	6.54006349279826	6.73864888589319	6.88871016426347	6.6931661955146	6.61844073358624	0.294041949813969	0.166651749882407	0.457960964592688
Merged-chr15-66919565-4	chr15	66919451	66919651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018865, exon 5 of 5)	3' UTR (NM_018865, exon 5 of 5)	28158.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	5.69384940711128	5.52133767375252	5.72033092159937	6.12302117922275	5.54863584252302	5.73614731038598	5.81082299376524	5.96687556190856	-0.0608362849413514	0.832090681504839	0.935710699145492
Merged-chr18-9585077-2	chr18	9584977	9585177	+	837.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A-int|LTR|ERVK	34392.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	3.30133695576307	3.59865517087689	3.52684297515146	3.03835728041805	3.46732529310606	3.4160707592771	3.61002764831002	3.30009193417099	0.266588003646671	0.628365436761807	0.841497308108383
Merged-chr9-119324274-3	chr9	119324185	119324385	+	747.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1858.0	NM_133985	108737.0	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	3.19955243259828	3.36736430522314	3.3266405940861	3.50383170203042	3.43151135641045	3.5568279374526	3.48236214161113	3.64399344203829	0.543582118045178	0.29062243330214	0.602869066641471
Merged-chr9-56324780-3	chr9	56324668	56324868	+	714.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 2 of 6)	intron (NM_172924, intron 2 of 6)	93282.0	NM_172924	244895.0	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	3.97458762365473	3.98202650129141	4.02276166401638	3.97148296314644	3.86042978628514	4.0971867318313	3.95839227016068	3.9728217482288	-0.0481577413519249	0.908621307582022	0.966100563913989
Merged-chr10-53877443-3	chr10	53877346	53877546	+	883.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126537.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	4.33355948858831	4.17643970603999	4.08835034871601	4.17373363268546	3.90373437092012	3.65048968399184	4.02471296738237	3.72283179606429	-0.974376145147766	0.0284262347817011	0.161686987815783
Merged-chr5-143532236-3	chr5	143532149	143532349	+	908.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-4218.0	NM_001347530	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	3.72541824000018	3.80356134481318	3.61301214402202	3.12705107808001	4.15761114471199	3.84758668159328	3.81336936311561	4.01319004795099	1.13966858697399	0.0263848302871342	0.154026559091932
Merged-chr9-110529190-4	chr9	110529079	110529279	+	981.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-3418.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	5.69293141038549	5.46931770508432	5.03426509188038	5.00013389143012	5.85150787209897	5.76740620836998	6.1113609597806	5.73802791459682	0.945727649582886	0.001913204281686	0.0225815306286574
Merged-chr3-81051739-4	chr3	81051633	81051833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	15317.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	8.45905208189555	8.41000229183352	8.59907768971754	8.63438506232875	8.43829822583204	8.48767509144797	8.57758189913202	8.34959420155408	-0.0846349206203911	0.581835013517901	0.816420227529328
Merged-chr18-64929746-3	chr18	64929619	64929819	+	844.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	41963.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	3.6158636508486	3.38366803502796	3.61640031774818	3.70757809737783	3.10745881366379	3.25910326818672	3.49985658392166	3.51205927700495	-0.829975101585659	0.12338544103687	0.389524913392336
Merged-chr6-136465207-4	chr6	136465097	136465297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-49628.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	5.17404802719228	5.33987255409845	5.27925670899607	5.33644453671622	5.86577846742327	5.77704949501413	5.69707012374312	5.91773572759445	0.896153907589133	0.000698778740647242	0.0101238290210727
Merged-chr2-131180161-4	chr2	131180058	131180258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007682)	promoter-TSS (NM_007682)	-91.0	NM_007682	12616.0	Mm.440169	NM_007682	ENSMUSG00000068267	Cenpb	CENP-B	centromere protein B	protein-coding	5.5157855001086	5.71435812501277	5.45667590927561	5.78655173336751	5.89623069693894	5.63482221717567	6.18661793824442	5.67767170225318	0.379719320486011	0.172538764254409	0.466041920949626
Merged-chr11-101646273-4	chr11	101646195	101646395	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18346.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	4.45918320141942	4.29951627986663	4.49784601977033	3.84094077261157	4.41453515381556	4.23346897321053	4.31886852176663	4.0532202957772	-0.0441422291529518	0.919504887528044	0.970308092934814
Merged-chr13-70650276-4	chr13	70650093	70650293	+	923.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-12559.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	4.24630406692673	3.74327557385122	4.85346461459654	4.71303263114318	4.41243423493742	3.94303383672266	3.86527957697097	4.28922438613419	-0.733101212777558	0.153806893660273	0.438737662158642
Merged-chr8-8661365-4	chr8	8661262	8661462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010111)	promoter-TSS (NM_010111)	-589.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	6.52476031709255	6.74338799729505	6.93329480361317	6.93154117823849	6.52303278829279	6.78579440638095	6.79506419659392	6.62027674063724	-0.175046896826191	0.415820043793746	0.709930066326653
Merged-chr5-117127259-3	chr5	117127166	117127366	+	662.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199685, intron 1 of 20)	intron (NM_001199685, intron 1 of 20)	-6322.0	NM_001081308	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	3.26647972597784	2.94129424499742	3.15912577644178	3.14072311043634	2.78901669157532	2.87630667358077	3.35091958831347	2.97686555265742	-0.471650215935317	0.448325244541256	0.733633389660061
Merged-chr7-138885770-3	chr7	138885666	138885866	+	965.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23740.0	NM_009760	12176.0	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding	4.0733994298308	4.07659261326366	4.25654056331704	4.77148604005229	3.85968529341806	3.58498078327769	4.10409327026696	4.33599956156882	-0.863623948467303	0.0856406679835205	0.318707445413073
Merged-chr11-97050767-4	chr11	97050653	97050853	+	839.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081434)	promoter-TSS (NM_001081434)	-67.0	NM_001310509	71240.0	Mm.190450	NM_001081434	ENSMUSG00000038534	Osbpl7	4933437E18Rik	oxysterol binding protein-like 7	protein-coding	4.12222933241493	4.02899471539317	3.8851128597295	4.2221803081552	4.04482633622582	3.71137051392831	3.92016798724944	4.03059719611336	-0.380378525696233	0.386366283239742	0.687552275421561
Merged-chr19-21286700-6	chr19	21286610	21286810	+	815.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009551, exon 6 of 6)	3' UTR (NM_009551, exon 6 of 6)	14432.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	4.63159142673008	4.73161712812164	4.06339925454197	4.04923094609303	4.23065633374242	4.13702999116335	3.82703391644823	3.89835538888648	-0.906064075340358	0.0544292938030388	0.243534247246073
Merged-chr4-63119052-3	chr4	63118959	63119159	+	843.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028326, intron 12 of 14)	intron (NM_028326, intron 12 of 14)	35113.0	NM_007443	11699.0	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	3.70644485635302	4.34617313573385	4.13414993635814	3.94165761440629	3.85901565917808	4.11382246132431	4.11575591317266	4.41560177022469	0.219121584234802	0.631821207836572	0.843565602967326
Merged-chr9-53741210-4	chr9	53741100	53741300	+	891.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30335.0	NM_028060	72022.0	Mm.26159	NM_028060	ENSMUSG00000042195	Slc35f2	1500009K05Rik|AU019213	solute carrier family 35, member F2	protein-coding	4.77584787797757	4.39661704741113	4.41838597293849	4.7962548439864	4.47918691037348	4.40100355002471	4.94215537950797	4.73837243801823	0.077768641793785	0.839576039876457	0.938950496537544
Merged-chr12-79807882-4	chr12	79807794	79807994	+	901.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 10 of 10)	intron (NM_009014, intron 10 of 10)	116839.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	4.43171792575004	4.48965603402353	4.02697930403108	3.78050780626207	4.51830813389627	4.09785125309736	4.06165510453769	4.34995431875044	0.172603480530361	0.705864478494216	0.881859110549825
Merged-chr8-124232041-6	chr8	124231879	124232079	+	748.561096	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139272, intron 1 of 15)	CpG	585.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	3.90594841489983	3.75058038966486	3.80873251124886	3.6971999361974	3.66914945711893	3.87641918324307	3.79297564633056	3.95031129101182	0.103888877315152	0.816977099864402	0.929622615879435
Merged-chr8-18699459-8	chr8	18699365	18699565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007426, intron 5 of 8)	L3|LINE|CR1	42097.0	NM_007426	11601.0	Mm.439874	NM_007426	ENSMUSG00000031465	Angpt2	Agpt2|Ang-2|Ang2	angiopoietin 2	protein-coding	5.06739920460489	4.68648441304616	5.31294731619157	4.91500358450827	4.51430256296299	4.73520467840404	4.29302314663133	4.79790246659099	-0.858882055010485	0.0213273331000959	0.133608364964947
Merged-chr2-154552676-4	chr2	154552555	154552755	+	845.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001171640, exon 1 of 1)	exon (NM_001171640, exon 1 of 1)	879.0	NM_001171640	70362.0	Mm.479620	NM_001171640	ENSMUSG00000078129	Actl10	1700007I08Rik	actin-like 10	protein-coding	4.4507860426063	4.07816905186318	3.98607587758322	3.89726262443021	3.73197713210685	4.16107105674272	4.15677657523421	4.12826395540173	-0.162110886440591	0.719727673882879	0.888022825078143
Merged-chr3-27258635-4	chr3	27258545	27258745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS-int|LTR|ERV1	-58432.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	6.3984902730725	6.47646110965587	6.48336346161512	6.38703325582296	6.33136375924113	6.14930060323856	6.22085293047824	6.3599434027329	-0.240485439374252	0.266427209504554	0.578131740034666
Merged-chr14-60830279-4	chr14	60830171	60830371	+	986.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027436, intron 12 of 18)	MTD|LTR|ERVL-MaLR	45705.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	4.7020779130356	4.8227974019214	4.78845036007063	5.10265216473543	5.35690922839684	4.9674609978727	5.54138316448079	5.23538978013171	0.777681437827724	0.0201614763355861	0.128781082167532
Merged-chr7-5060356-4	chr7	5060273	5060473	+	943.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290432, exon 6 of 6)	exon (NM_001290432, exon 6 of 6)	-1770.0	NM_133671	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	4.60445005578294	4.46204282147056	4.33200501482031	4.06419323021578	4.30149147710647	4.32104695250071	4.26868955435213	4.23919119908404	-0.197563681953265	0.624089491901221	0.839275735925487
Merged-chr2-160083815-4	chr2	160083690	160083890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67137.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	6.40832121424744	6.23319393758579	6.51641844845465	6.50375833419562	5.58711220757879	5.79401942283168	5.80233472606994	5.54774781515893	-1.16778231187293	1.71324262971365e-06	5.70054680461123e-05
Merged-chr18-42589683-4	chr18	42589616	42589816	+	765.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10064.0	NM_181543	240239.0	Mm.186779	NM_181543	ENSMUSG00000042816	Gpr151	C130082O03Rik|GalRL|PGR7|nGPCR-2037	G protein-coupled receptor 151	protein-coding	3.36069223806676	3.24968207170099	3.16339525623872	3.4088630679283	3.57658181887992	3.80504569423872	3.57104795001772	3.77505335656679	1.22407024531399	0.0169330862181841	0.11429873342097
Merged-chr7-35169542-4	chr7	35169436	35169636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16849.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	5.28775674681928	5.67131271308604	5.57774872883154	5.60077483445018	5.37701512138337	5.39969364102353	5.64827773178959	5.37873422203097	-0.166376171076243	0.551781719231448	0.799073691139046
Merged-chr4-84545375-3	chr4	84545289	84545489	+	954.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172870, intron 2 of 5)	CpG	129697.0	NM_172870	242509.0	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	4.77467627774819	4.88110647247065	5.22679626068562	4.69392270284785	4.2571509657485	4.20229773441113	4.59994546940712	4.77224674737778	-0.921599932420764	0.0189236440000478	0.123258240874762
Merged-chr7-114117100-4	chr7	114116999	114117199	+	921.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	CpG	682.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	5.13385897039504	5.53600693938109	5.61350105168927	5.41952141504404	4.82511592006598	4.31638921847661	4.86225808122623	5.09843295128483	-1.20143575311537	0.000708348509165697	0.010216652200573
Merged-chr11-98952871-4	chr11	98952767	98952967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-7604.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	5.30370361754854	5.62827942907265	5.53198421649939	5.88682388872789	5.27693816764491	5.48020775020871	4.8420480181182	5.1701457671519	-0.72344549721386	0.02347074212702	0.14222222349645
Merged-chr11-74572902-4	chr11	74572801	74573001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 1 of 24)	intron (NM_001015046, intron 1 of 24)	17257.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	5.52872645837651	5.54247053077145	5.79618666070631	5.77792648080411	5.2278459788322	5.47000321806245	5.29884289001067	5.38323335338954	-0.581269623865074	0.035833308985385	0.188026472559581
Merged-chr6-38432697-4	chr6	38432681	38432881	+	838.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1144.0	NM_177185	320538.0	Mm.302831	NM_177185	ENSMUSG00000038538	Ubn2	2900060J04Rik|6030408G03Rik|BC060116|D130059P03Rik|mKIAA2030	ubinuclein 2	protein-coding	4.11641720011831	3.90138104492913	3.8909328263868	3.39315604845353	3.91211879497311	3.67350547145513	3.82437586301118	4.11438056587518	0.143911740554853	0.77308890053496	0.911199828859751
Merged-chr13-103768154-4	chr13	103768045	103768245	+	857.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361085, intron 2 of 11)	intron (NM_001361085, intron 2 of 11)	-3563.0	NM_172592	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	4.56744714200414	4.33651733772854	4.60678286996648	4.81482147737378	4.37983043165676	4.28272593594238	4.58516778238794	4.52545386272475	-0.358199338787338	0.34488652475943	0.653272604871241
Merged-chr10-96173117-4	chr10	96173003	96173203	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53104.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	4.97295488550998	5.0681434017059	5.140221107347	5.47377314877443	5.23173877711131	4.78799553816858	4.98470498507772	4.73751630405643	-0.442304122305339	0.199518297621182	0.50147358341222
Merged-chr18-58563765-4	chr18	58563670	58563870	+	992.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081072, intron 1 of 9)	intron (NM_001081072, intron 1 of 9)	7530.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	5.67000830106787	5.90410065755395	5.7916100541199	5.99599088481622	5.73799420769809	5.46977727970799	5.19515010739678	5.41614183479683	-0.625668846779305	0.0273093997891976	0.157448223521407
Merged-chr16-94370310-3	chr16	94370226	94370426	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159620)	promoter-TSS (NM_001159620)	4.0	NM_001159619	56176.0	Mm.474449	NM_019543	ENSMUSG00000022940	Pigp	Dcrc|Dscr5	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding	5.15519275522256	5.44536962818599	5.34322879169365	4.93878513516228	5.18599572705923	5.42733875666963	5.37282497395738	5.36814244301239	0.211734470381278	0.489868505607128	0.761966459176932
Merged-chr12-3345254-3	chr12	3345174	3345374	+	971.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-19858.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	3.78288542234768	3.94145372129464	3.92351448637908	3.32945959585543	3.78891530359785	3.6269212117516	3.61193051990361	3.56731423224564	-0.310042402684637	0.547050562156288	0.79668122846684
Merged-chr7-19461761-4	chr7	19461648	19461848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-3254.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	6.16301292540512	6.39388560307226	6.3383581579554	6.51657532207283	6.50083082950565	6.01440034591464	6.28781817439123	6.40409499508773	-0.069047049183792	0.770768156244733	0.910309062742149
Merged-chr4-134249824-4	chr4	134249725	134249925	+	794.575012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4234.0	NM_024215	68040.0	Mm.300404	NM_024215	ENSMUSG00000028840	Zfp593	3110024A21Rik|AV062409|E130106C14Rik|ZNF593	zinc finger protein 593	protein-coding	3.93885612286754	3.8807630811982	3.5722646248143	3.85018287025183	4.09819501682383	4.44053504852444	4.36770956088606	4.5289120379996	1.38782119024678	0.00138482382056881	0.017523665268355
Merged-chr4-132515657-4	chr4	132515556	132515756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5200.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	8.37145851331964	8.40929625662043	8.184874164605	8.25433163506409	8.38430227861939	8.31851105946252	8.27981554186207	8.41912174647837	0.0580899883781872	0.703351671575858	0.880690314212345
Merged-chr6-119401715-4	chr6	119401640	119401840	+	762.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	MTD|LTR|ERVL-MaLR	-13006.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	4.19771278557292	4.20617168978962	4.24108522291992	4.03732618615855	4.24457247980109	3.91381211247178	4.0906242206737	3.9580596978876	-0.248652428176963	0.552168854978238	0.799390369940528
Merged-chr1-97662491-4	chr1	97662379	97662579	+	975.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133825)	promoter-TSS (NM_133825)	-461.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	4.93724716700506	5.16659457312276	4.07543842817496	4.75794392834683	4.83196187087481	4.81662481547182	5.00887378884948	4.67832239968567	0.0914057853131271	0.823808057219226	0.932402068800701
Merged-chr8-47948449-4	chr8	47948300	47948500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 1 of 22)	intron (NM_133791, intron 1 of 22)	42151.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	5.80433478893239	5.04616763252929	5.22661786121266	5.59218578248351	5.22125461335282	5.04132663759671	5.16875871311984	5.22301675917616	-0.519440895551437	0.108999759537481	0.364500952228652
Merged-chr18-70530305-4	chr18	70530201	70530401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136090)	promoter-TSS (NM_001136090)	20.0	NM_001136090	26447.0	Mm.244352	NM_011972	ENSMUSG00000038425	Poli	Rad30b	polymerase (DNA directed), iota	protein-coding	8.32633160878085	8.34430592817639	8.05101902878657	8.36773722718268	8.20939819042577	8.14514669489204	8.31001722443257	7.99764349544857	-0.141607586818389	0.39535721475246	0.694224450357239
Merged-chr11-32341353-4	chr11	32341299	32341499	+	830.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-6412.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	3.51875314550451	3.53136011595366	3.57316928415648	3.55952228534315	3.44282270840742	3.45556481272864	3.70632046457294	3.57117019502045	-0.00390589517410486	0.993569478559756	0.997702270136287
Merged-chr1-128593235-3	chr1	128593118	128593318	+	917.3428960000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009911)	promoter-TSS (NM_009911)	-919.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	3.75079548541213	4.00622225608371	3.79958994232054	3.81318855291719	3.30564138818579	3.53201395577976	3.46615963282134	3.53604804082979	-1.27659395994606	0.0102082076267816	0.0800760426125949
Merged-chr14-47533834-4	chr14	47533752	47533952	+	955.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34582.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	4.93269212593523	4.67231356240046	4.61217519379326	4.7319679515866	5.82177588205595	6.03353093840704	5.54142805926301	6.00650216469347	1.99642567822865	4.27637528659474e-11	3.46683504014267e-09
Merged-chr19-45005659-4	chr19	45005560	45005760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153796)	promoter-TSS (NM_153796)	-3.0	NM_001348254	226153.0	Mm.105585	NM_153796	ENSMUSG00000025209	Twnk	D19Ertd626e|PEO|Peo1|Twinl	twinkle mtDNA helicase	protein-coding	6.01550064796198	6.40656155514097	5.69814701265892	6.0696610895264	6.25628255671279	6.27528479796022	5.94196427874707	5.66606106656314	-0.0202156930852935	0.943053869659854	0.97939909270739
Merged-chr7-19270825-4	chr7	19270743	19270943	+	943.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009499, intron 1 of 12)	intron (NM_009499, intron 1 of 12)	1011.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	4.41211912260016	4.41875351686054	4.76954408669746	3.75808032877233	4.67499705395296	4.71805082512148	4.7460167109417	4.8003257196682	0.794756604380216	0.0623593754945471	0.264317155262691
Merged-chr1-183273278-4	chr1	183273098	183273298	+	829.674988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-23862.0	NM_181732	108909.0	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	3.28366923171665	3.55771042742606	3.40434958778514	3.51928176125067	3.41929495744744	3.51787915343412	3.55145224417053	3.45873263991266	0.108710082568281	0.828215098027314	0.934092669463108
Merged-chr8-109737187-1	chr8	109737087	109737287	+	630.5	f0_balb.idr	intron (NM_001080930, intron 1 of 3)	intron (NM_001080930, intron 1 of 3)	552.0	NM_001080930	52335.0	Mm.276770	NM_001080930	ENSMUSG00000069895	Atxn1l	AW558552|Boat|C330011L24Rik|D6Mgi37|D8Ertd587e	ataxin 1-like	protein-coding	3.25968611919315	3.09053923093218	3.51548470612706	3.1570813559121	2.95949111184515	3.05223275737821	3.00245321881843	3.51320695437246	-0.421842306496924	0.483705959314594	0.757962893581663
Merged-chr14-8162003-3	chr14	8161886	8162086	+	717.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360315, intron 18 of 18)	intron (NM_001360315, intron 18 of 18)	11006.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	3.37430122039079	3.75923304408312	3.60459516859031	3.65077482472959	3.58766365104456	3.55008734048867	3.69010361336523	3.49289421170417	-0.086376308561305	0.859750790043021	0.947001771629535
Merged-chr13-101844611-3	chr13	101844505	101844705	+	620.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76388.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	3.66964660434604	3.64021057137998	4.06464613384066	3.87594986097942	3.7477460746517	3.78896282269285	4.16567012150349	3.77850239166997	0.155541162830127	0.739925537402633	0.897638774679699
Merged-chr8-116636156-4	chr8	116636039	116636239	+	825.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	L1MC3|LINE|L1	96852.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	3.63223817431012	3.95506980561119	3.69233880803988	3.51540206612693	4.50609195466743	3.68993369336243	4.02958381874486	4.0003399958931	1.10032275280557	0.0242194661820714	0.145369909364695
Merged-chr13-76751239-2	chr13	76751147	76751347	+	829.666626	f0_c57.idr|f1_c57bl6.idr	intron (NM_030174, intron 6 of 20)	intron (NM_030174, intron 6 of 20)	366286.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	2.81319629041672	2.74260075674772	2.89011239698156	2.79180836071086	3.63199610666649	3.27797643204682	3.80020609194423	3.15923434994327	2.69638373278256	1.61025860938382e-05	0.000422160580321661
Merged-chr10-94518358-3	chr10	94518251	94518451	+	904.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	RLTR11A2|LTR|ERVK	3494.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	4.16668743287281	4.04182515197417	4.34192415539541	4.59182726226156	3.90249811966694	4.19489584561456	4.0532643841991	4.33912310094548	-0.479782136726301	0.269084995227002	0.580620459637407
Merged-chr10-58523065-4	chr10	58522949	58523149	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162956, intron 6 of 15)	L1Md_F2|LINE|L1	25112.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	5.04444990469212	5.83715334387784	5.12237246336922	5.0417332733086	5.97430481208483	5.68432957682652	5.61175649316606	5.82239539660295	0.815756479040477	0.0121250197536038	0.0906180996473921
Merged-chr1-36473457-4	chr1	36473371	36473571	+	910.7625119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033570, intron 1 of 6)	intron (NM_033570, intron 1 of 6)	1874.0	NM_033570	94220.0	Mm.422638	NM_033570	ENSMUSG00000037408	Cnnm4	5430430O18Rik|Acdp4	cyclin M4	protein-coding	4.20889365413206	4.53908864212929	4.52914759637099	4.48529653556257	4.6416113638096	4.48514453001838	4.6940380413915	4.52623696343248	0.314455810630805	0.385355609282015	0.686726426145025
Merged-chr2-167656839-4	chr2	167656800	167657000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 1 of 5)	intron (NM_145538, intron 1 of 5)	4644.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	7.37184285687406	7.64636273197813	7.9885497191434	7.71226812617065	7.5648347933081	7.64039717878963	7.48365226251919	7.7756665676698	-0.105192165934992	0.589637599354558	0.820539533210917
Merged-chr5-124475434-4	chr5	124475333	124475533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	intron (NM_030259, intron 1 of 3)	2802.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	7.81505322494526	8.15705259183137	8.00583803557412	7.96061649848041	8.17296523421484	8.25566932022567	8.05226058338067	7.7465364152365	0.104497550499983	0.567396161529322	0.808229609203301
Merged-chr11-109472329-4	chr11	109472277	109472477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028710)	promoter-TSS (NM_028710)	852.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	4.8261359730765	5.04729516191577	5.39978920117043	4.97358661784203	4.72721072186207	5.11779435796058	5.20997470199941	5.17286656231931	-0.0216929675190972	0.948840611154405	0.981621549684012
Merged-chr6-97479442-4	chr6	97479325	97479525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	LTR16A|LTR|ERVL	8395.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	8.18485319432914	8.51546206537836	8.4976131593081	8.51176703895749	8.38086436997161	8.66559692186114	8.80353165896482	8.48224867515508	0.191823616793325	0.268348526993394	0.580107684368438
Merged-chr15-77945873-4	chr15	77945795	77945995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017983, intron 7 of 8)	intron (NM_001017983, intron 7 of 8)	10827.0	NM_001168260	239554.0	Mm.295605	NM_001017983	ENSMUSG00000016552	Foxred2	A430097D04Rik|D15Bwg0759e|Gm304	FAD-dependent oxidoreductase domain containing 2	protein-coding	6.91485350639131	6.44326209343753	6.84193423544327	6.76906469892713	6.26858800485702	6.18506357856311	6.17766021289665	6.56828306707783	-0.646631583599435	0.00531627024917284	0.049745948107713
Merged-chr12-111920227-3	chr12	111920134	111920334	+	670.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12179.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	3.36103759915424	3.35295817525569	3.90349978450197	3.65714429767949	3.27148115598575	3.12648505907215	3.46500599560757	3.77490496021651	-0.5163091473919	0.369421901945041	0.673692529630015
Merged-chr1-43933897-4	chr1	43933806	43934006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310540)	promoter-TSS (NM_001310540)	-88.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	8.60581235117762	8.84241245005344	8.49549876729779	8.54654189263398	8.86951478398325	8.83067766961404	8.84133302337391	8.638273299627	0.212993252432807	0.177771601489	0.473403599924633
Merged-chr7-80439956-3	chr7	80439854	80440054	+	963.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1b|LINE|L1	-34518.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	4.08228600671901	4.25378532002132	4.48248945346644	4.52839145433276	4.17497694373472	4.25919347108518	4.38367408206405	4.27335389724662	-0.217695284398314	0.585119901825641	0.818007803493864
Merged-chr17-57247843-4	chr17	57247759	57247959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308074)	promoter-TSS (NM_001308074)	-170.0	NM_030084	78308.0	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding	8.86089247306255	8.86274856238376	9.00064752578753	8.81760504407246	8.73743209394298	8.89287802208437	8.87521802241541	8.67459756657347	-0.110108859244595	0.451465814837063	0.736071851703571
Merged-chr1-21830117-3	chr1	21830042	21830242	+	768.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023872, intron 1 of 13)	intron (NM_023872, intron 1 of 13)	131800.0	NM_001160139	226922.0	Mm.336519	NM_023872	ENSMUSG00000028033	Kcnq5	7730402H11|9230107O05Rik|AA589396|D1Mgi1	potassium voltage-gated channel, subfamily Q, member 5	protein-coding	3.05830659534261	3.19558341059202	3.05867404751912	3.38206472092147	3.23536774109867	2.82205771549855	2.92417142934283	2.99595257933738	-0.710008439879465	0.25427180573493	0.565605577061989
Merged-chr7-127345889-8	chr7	127345763	127345963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146202)	promoter-TSS (NM_146202)	-549.0	NM_146202	233890.0	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	5.61314943411317	5.71947536741212	6.15444738860758	5.50234785262185	5.39423337777061	5.84258653148605	5.38284257312496	5.98135300074823	-0.150905002863531	0.627533847341858	0.841190804518759
Merged-chr19-41383986-4	chr19	41383866	41384066	+	878.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 1 of 16)	intron (NM_031376, intron 1 of 16)	1104.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	3.80525502352427	3.52047556242506	3.89972829785574	3.70603730926711	3.88034320661176	3.58955311512543	3.63638070141251	3.80355867067115	0.0133413213256267	0.977471049904055	0.991888117862217
Merged-chr16-43380105-4	chr16	43379999	43380199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	40097.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	5.9277926085048	5.89722717508135	6.11633425179737	6.26254261212481	5.87219061641924	5.45151192545117	5.80595773364677	6.09246696408529	-0.382153625836027	0.156288213561285	0.442147804176419
Merged-chr11-101417393-4	chr11	101417297	101417497	+	961.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144829)	promoter-TSS (NM_144829)	36.0	NM_144829	69684.0	Mm.146283	NM_144829	ENSMUSG00000075528	Aarsd1	1110069E20Rik|2310044P18Rik|AA589600|AlaX|AlaXp-II	alanyl-tRNA synthetase domain containing 1	protein-coding	4.67438352764595	4.47185803228979	4.37608453077381	4.42273540941033	4.90070451518484	4.76977851279488	4.61478601655899	4.81582953208962	0.648670367967248	0.0614638063149623	0.262349020729953
Merged-chr2-128745976-4	chr2	128745853	128746053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	47038.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	6.74792997827829	6.83769359311445	6.58499235291458	6.84924650858997	6.73272387100015	6.51720135628945	6.12068309867944	6.46352086339703	-0.40060994134574	0.0812506537033169	0.309368796402503
Merged-chr8-88635616-1	chr8	88635516	88635716	+	952.3333130000001	f1_c57bl6.idr	intron (NM_027840, intron 1 of 3)	intron (NM_027840, intron 1 of 3)	512.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	3.99785593627983	3.95580207095377	4.53847774469827	3.96338804852493	4.77130076813653	4.7517853223243	4.80156829886754	4.88509127495495	1.55100499146891	6.10956892695795e-05	0.00134137263001832
Merged-chr3-100994452-4	chr3	100994355	100994555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167906, intron 8 of 8)	intron (NM_001167906, intron 8 of 8)	-24792.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	6.19478813192664	6.10674710995792	5.88747724593186	6.53296647016891	6.12184025894881	6.27023698291947	6.32794470374573	6.08978757888173	-0.0316177583420938	0.901944412744556	0.963609230228517
Merged-chr9-7554541-4	chr9	7554444	7554644	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-3885.0	NM_008611	17394.0	Mm.16415	NM_008611	ENSMUSG00000005800	Mmp8	BB138268	matrix metallopeptidase 8	protein-coding	3.60875215037876	3.81214955268628	4.10300405391771	3.89174581817443	3.77324443046218	3.59979533720794	4.08392122669574	3.82774933743349	-0.095057167966196	0.840346342907408	0.939246943014465
Merged-chr8-94191302-4	chr8	94191211	94191411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	12222.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	8.55780736625393	8.66280853332338	8.32397719803388	8.4545779420388	8.46398518396845	8.48441596526856	8.48199803245903	8.40534461772987	-0.0586916635746571	0.703622853419385	0.880815530839578
Merged-chr5-93094098-4	chr5	93093967	93094167	+	968.744019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009818, intron 1 of 9)	CpG	651.0	NM_001347377	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	4.68475533860108	5.82539231563327	5.03761923032533	4.94001860020598	4.49782776383984	4.27931409243906	4.29606322907143	4.20172205133578	-1.83773409506835	2.71819833600673e-05	0.000667397859119085
Merged-chr8-11336699-4	chr8	11336606	11336806	+	917.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-23880.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	5.39057955699114	5.03786397741657	5.16713573168553	5.63356048712598	4.53009735419283	4.91276009656312	4.8325419210803	4.81262467394836	-1.12047511158219	0.00109853939859784	0.0144935932998694
Merged-chr10-59910554-3	chr10	59910475	59910675	+	758.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	30984.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	2.47817007358487	2.93011398529749	2.69888401776398	2.78874287069995	2.7089737691662	2.87188092832449	3.03955469033413	2.82664203285173	0.578697619703734	0.386598201335952	0.687735513668192
Merged-chr8-70522219-4	chr8	70522130	70522330	+	847.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029366, intron 1 of 4)	B2_Mm2|SINE|B2	950.0	NM_029366	75620.0	Mm.482129	NM_029366	ENSMUSG00000055553	Kxd1	0610030B01Rik|2810422J05Rik|C78305	KxDL motif containing 1	protein-coding	4.27406770365502	4.23144275542361	3.89342997764326	4.11711873043266	3.8964279786884	4.52229832446371	3.63965815970613	4.18681571476692	-0.09881637511847	0.835259843754419	0.937285789387356
Merged-chr13-111655465-4	chr13	111655377	111655577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30701.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	5.89110482576107	5.99507794980783	6.22335654433726	6.43176577629202	5.96399223630255	5.75102092052307	5.81423352314576	6.02246815324424	-0.428516909009313	0.100752486128834	0.348450571408787
Merged-chr18-10617814-4	chr18	10617718	10617918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009226)	promoter-TSS (NM_009226)	22.0	NM_009226	20641.0	Mm.603	NM_009226	ENSMUSG00000002477	Snrpd1	AA407109|AL023031|SMD1	small nuclear ribonucleoprotein D1	protein-coding	6.5677758563241	6.43380549007131	6.3169589342918	6.24852947647763	6.24269808172047	6.45538542237078	6.37392341245311	6.3308971740008	-0.0595308898381981	0.78875059241615	0.91812687233996
Merged-chr6-83131770-4	chr6	83131632	83131832	+	934.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4076.0	NM_001136227	20166.0	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	4.36993448349873	4.03582024091922	4.16949263725718	4.03128351387271	3.9369820177003	3.94172432648928	4.06137808494708	3.9794175453562	-0.452833621864323	0.283765166554351	0.595814772571451
Merged-chr14-63967756-3	chr14	63967645	63967845	+	601.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20035.0	NM_026359	67750.0	Mm.33864	NM_026359	ENSMUSG00000021961	4930578I06Rik	AI429111	RIKEN cDNA 4930578I06 gene	protein-coding	3.4136991088913	3.30790500848406	3.04121445402815	2.89516237854589	2.94245666688712	3.02075734551218	2.90231870799431	2.9764591746523	-0.887726384981762	0.149930144705319	0.432360854406563
Merged-chr17-34958201-3	chr17	34958094	34958294	+	648.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010478, exon 1 of 1)	exon (NM_010478, exon 1 of 1)	1044.0	NM_010478	15511.0	Mm.372314	NM_010478	ENSMUSG00000090877	Hspa1b	Hsp70|Hsp70-1|Hsp70.1|hsp68	heat shock protein 1B	protein-coding	3.08566856958004	3.52855320238283	3.1457918218778	3.4574316139821	2.91166163522756	3.06647893978943	2.80894401942375	2.95645796665405	-1.63434437578652	0.00926396306755256	0.074731926341818
Merged-chr2-128699449-3	chr2	128699394	128699594	+	810.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	579.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	3.35661131479957	3.74326078677871	3.24073386142336	3.48865621772944	3.12786345021207	3.28991006740408	3.10349585775492	3.23913162702927	-1.05665831974827	0.0591820609158789	0.256315743760692
Merged-chr7-107609819-4	chr7	107609710	107609910	+	943.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163557, intron 1 of 25)	intron (NM_001163557, intron 1 of 25)	2966.0	NM_001163557	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	4.86547512933941	5.44541203989105	4.94482682453874	4.39368048634523	5.55740611666845	5.53693278180553	5.28119645650475	5.11918877288424	0.794679915412886	0.0334213752699755	0.179770276607087
Merged-chr4-124714753-4	chr4	124714661	124714861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029157)	promoter-TSS (NM_029157)	-100.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	7.14442102536671	7.1527751741549	6.70279574374186	6.71860384730799	6.93220591479283	6.76672262837988	7.1314146761003	6.92582678654448	0.0084090616394398	0.96947540447676	0.98900997240126
Merged-chr11-69325805-4	chr11	69325695	69325895	+	976.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010599)	promoter-TSS (NM_010599)	-463.0	NM_010599	16499.0	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	5.00378120069399	4.83749641344941	4.6653552061985	4.44425335908072	5.0834478626388	5.07513177483951	5.13431900978136	5.03384658442791	0.69866835966283	0.0371586937633653	0.192287798137592
Merged-chr3-60438867-4	chr3	60438747	60438947	+	877.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33983.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.18076473050321	4.05920600951713	4.0172621388462	3.90869091208306	5.04423971474624	4.25886626865366	4.85702854803372	4.81738574911475	1.73006439371945	1.35935237246405e-05	0.000363476117654465
Merged-chr6-125600342-4	chr6	125600243	125600443	+	754.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 12 of 51)	intron (NM_011708, intron 12 of 51)	47395.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	3.8871868273808	3.49310234958364	3.61476011747724	3.74089455360133	4.04663846743823	4.01009956456294	3.76988143541745	4.22797477351749	0.9300340295477	0.0431498371938365	0.211366200648275
Merged-chr8-88279766-4	chr8	88279668	88279868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007406, intron 1 of 27)	intron (NM_007406, intron 1 of 27)	-3224.0	NM_001109756	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	5.73716821798477	5.72448375725889	6.10715459311949	6.09800064068171	5.46481620493193	5.75453392931034	5.68379599828066	5.89923005510092	-0.388734470902206	0.153470126460437	0.43812818879908
Merged-chr16-56659028-4	chr16	56658921	56659121	+	997.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014399, intron 16 of 27)	intron (NM_001014399, intron 16 of 27)	58429.0	NM_001357124	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	6.05441966840131	5.48704287794601	5.97768341056059	5.97144902454742	5.5306374987218	5.41496104349809	5.77604191663598	5.23000596120985	-0.643143804300148	0.0278344769670838	0.159455149781896
Merged-chr11-74981606-4	chr11	74981436	74981636	+	899.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 8 of 18)	intron (NM_001002764, intron 8 of 18)	55664.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	3.85083129560789	4.05199304824485	3.63240743275617	3.99044582682509	3.84590578072746	3.74961519780029	3.88436145026494	3.945970113356	-0.118788607642484	0.792410776295208	0.919610988558604
Merged-chr14-103375750-3	chr14	103375643	103375843	+	701.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-28943.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	3.66135258257297	3.43019869491513	3.6101688272845	3.81460687113395	3.64636839798354	3.21240653112866	3.78848148686028	3.60815147986863	-0.187090290219248	0.72147199256109	0.888772195300388
Merged-chr11-120355767-3	chr11	120355655	120355855	+	768.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-5779.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	3.25823309873462	3.37798909823165	3.44792466614071	3.20038453784387	3.67955998361049	3.62325941151029	3.91373956499183	3.71112392550692	1.38407033654051	0.00468670781059864	0.0453008114137155
Merged-chr2-120098041-4	chr2	120097930	120098130	+	927.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 4 of 5)	intron (NM_133838, intron 4 of 5)	56545.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	4.92326653655089	4.26259487523196	4.58147284227904	4.91773737029478	4.64946879284342	4.30908785885826	5.16694120673615	5.24239812539689	0.388348990703577	0.364124451299709	0.669059174946098
Merged-chr11-98361443-4	chr11	98361341	98361541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021547, intron 1 of 14)	intron (NM_021547, intron 1 of 14)	3073.0	NM_021547	59045.0	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	6.70055264676848	6.24683134000239	6.3053696654101	6.77644525647144	6.33568952459641	6.19152713022131	6.09395974760558	6.0547549767926	-0.537491926919955	0.0305464344708306	0.169256162167154
Merged-chr9-64829896-3	chr9	64829796	64829996	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162917, intron 2 of 34)	URR1B|DNA|hAT-Charlie	18885.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	4.31739875554164	4.20996226135328	3.98097155738082	3.89237719599233	4.55837812789252	4.31109351360471	4.06930300120071	4.51095244591594	0.697221016491217	0.0939790435785836	0.335355408977791
Merged-chr1-131524014-4	chr1	131523906	131524106	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	3355.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	4.21206870412968	3.98581883982232	3.84351394271052	2.86634547362784	4.91456277537121	4.47872520588656	4.28111163244133	4.42226055697084	1.62919073323736	0.0554366005662245	0.246284066702662
Merged-chr1-75210815-4	chr1	75210707	75210907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011494)	promoter-TSS (NM_011494)	-22.0	NR_102731	20872.0	Mm.1155	NM_011494	ENSMUSG00000026201	Stk16	EDPK|Krct|MPSK|PKL12|TSF-1	serine/threonine kinase 16	protein-coding	7.35874155933799	7.47810870964645	6.95925163150406	7.40808209077849	7.67455344987697	7.74740884181628	7.79309930881555	7.75990246758671	0.553654946816949	0.00317044955209132	0.0333140579669779
Merged-chr19-59052218-4	chr19	59052112	59052312	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 2 of 16)	intron (NM_001114312, intron 2 of 16)	23857.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	5.17506765660484	4.46227985793198	4.94174186656725	5.17851156690754	5.29000040127138	5.04309779369098	5.08817740195472	5.28884078134676	0.391060070352697	0.258665949622229	0.570489393947544
Merged-chr13-98031456-4	chr13	98031350	98031550	+	884.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012026, intron 7 of 35)	intron (NM_012026, intron 7 of 35)	174715.0	NM_012026	110596.0	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding	4.02966177091028	4.28895541000117	3.92577144388478	4.49092478440667	4.08251648447914	3.9916188904984	4.01359296954599	4.29798743786724	-0.304598735653364	0.488099794856879	0.761126159857708
Merged-chr3-79814022-4	chr3	79813946	79814146	+	860.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027495, exon 12 of 12)	3' UTR (NM_027495, exon 12 of 12)	28616.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	3.68645557076773	4.04078204152604	3.74597159429639	3.60714214955102	4.27221649484978	4.03171901879891	4.164303835894	4.09603045922019	1.02907136909424	0.018509231655006	0.121576943128947
Merged-chr4-119167832-3	chr4	119167742	119167942	+	955.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6014.0	NM_001145935	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	3.35047718981924	3.88774560945753	3.35084509343857	3.12646233054457	4.10782436202409	4.33043681564115	4.5673207123309	4.42485339692559	2.58944487409444	5.54174799095792e-07	2.03642787944447e-05
Merged-chr17-85090221-3	chr17	85090125	85090325	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163624)	promoter-TSS (NM_001163624)	42.0	NM_145984	213760.0	Mm.259035	NM_145984	ENSMUSG00000024127	Prepl	2810457N15Rik|9530014L06Rik|D030028O16Rik|mKIAA0436	prolyl endopeptidase-like	protein-coding	5.49356502688797	5.41870127191402	5.95760789885125	5.50698320385932	5.54472547710662	5.75581526811276	5.90660250918808	5.86909506821727	0.278426054675801	0.321778631830188	0.633247915544561
Merged-chr16-78452496-4	chr16	78452406	78452606	+	898.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75325.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	3.5586224981003	4.03458649786475	3.55902463212974	4.09206865918419	3.88101920309769	3.79209906948671	3.66220339560282	4.17636839556415	0.126773611029338	0.803611952432128	0.924240093751175
Merged-chr18-35027299-4	chr18	35027204	35027404	+	972.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72953.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	5.55565745381553	5.22252481205293	5.48044574540105	5.89024367873161	4.89915837666131	4.7050823692415	5.52819513710251	4.92944939491633	-0.936946906333721	0.00849887267479984	0.0701056041394806
Merged-chr12-80320101-4	chr12	80320004	80320204	+	931.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59723.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	4.31721967698729	4.26979988924265	4.53847012349448	4.74302416459108	4.63226886365825	4.29254923225639	4.55705715897661	4.8864985613124	0.251929386046832	0.524382660866137	0.782889366091761
Merged-chr7-45017734-4	chr7	45017640	45017840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009101)	promoter-TSS (NM_009101)	-202.0	NM_009101	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	8.97829185094525	9.20999005144498	9.02822951287861	8.81053382274502	8.77823178794166	8.86366345131034	8.72438248976153	8.74152012452068	-0.290997338555849	0.0609395911733492	0.260925117909518
Merged-chr1-77514719-3	chr1	77514585	77514785	+	906.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007936, intron 1 of 17)	CpG	403.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	3.88160510903626	4.08336155537009	4.15526578406484	4.03446660149644	3.67433270448241	3.8397306869282	4.05229616664387	3.59845976931042	-0.689695355567754	0.130521892403049	0.402130363128451
Merged-chr18-32240276-4	chr18	32240171	32240371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133658)	promoter-TSS (NM_133658)	-60.0	NM_133658	13872.0	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	7.30662807509624	7.03935829974925	7.01943205458019	7.64736669727318	7.22874148329031	7.19566085928576	7.34167035767386	7.50267871623732	0.0358330323475843	0.871315289972801	0.951599337849259
Merged-chr13-104139770-4	chr13	104139661	104139861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001361054, exon 11 of 11)	exon (NM_001361054, exon 11 of 11)	30020.0	NM_144838	218544.0	Mm.44416	NM_144838	ENSMUSG00000042743	Sgtb	C630001O05Rik	small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta	protein-coding	5.65872945585126	5.51293690835503	5.96191983707696	5.78204048667376	5.90934197917886	5.69815535180924	5.84644292646823	5.57447774928699	0.0522010712849221	0.844869929275416	0.941218991545198
Merged-chr18-67289130-4	chr18	67289041	67289241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053261)	promoter-TSS (NM_053261)	-82.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	7.33317675404089	7.29821273618789	7.35511031907803	6.98457217895762	7.65139734207738	7.64015132027933	7.67203626025099	7.45791453527646	0.497554429018081	0.00788035189196503	0.0664907026218799
Merged-chr2-38484873-5	chr2	38484840	38485040	+	989.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26757.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	3.83052932179605	4.26898042024905	4.20893705542228	4.17192898219639	4.37838171543045	4.63267159472733	4.1432235801845	4.53543592713578	0.712767166318019	0.0828122013390647	0.312629084254364
Merged-chr10-22357640-3	chr10	22357532	22357732	+	971.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	ORR1D1|LTR|ERVL-MaLR	-4262.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	3.87814897350672	4.53543523717847	4.16620880687812	3.55630608893324	3.99454675659703	4.10663890878072	3.86275613301376	3.82185128804857	-0.349627345980664	0.487524237635676	0.760838405280538
Merged-chr18-82635679-4	chr18	82635587	82635787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177832, intron 13 of 29)	RLTR22_Mur|LTR|ERVK	57047.0	NM_177832	329002.0	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	5.72886596986119	5.58805526002232	5.72987198825528	5.86043811335868	5.60844760218468	5.58212611591169	5.18070437425422	5.62666694954616	-0.376085732578582	0.173391465537933	0.467405079550257
Merged-chr17-57172385-3	chr17	57172235	57172435	+	857.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	21846.0	NM_019418	50930.0	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	2.63782158938474	2.54268943535584	2.57831063075874	2.53254987358481	2.39963534293884	2.48175615628239	2.22511271624641	2.51429235586926	-0.926970257486307	0.202660559606964	0.5052424073505
Merged-chr15-78571633-4	chr15	78571517	78571717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009008, intron 1 of 6)	intron (NM_009008, intron 1 of 6)	1166.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	5.81386676349296	6.06113148688492	5.71603615644057	5.56467416034901	5.80004213463293	5.86606220051763	5.87641825721563	5.83428643669184	0.0849608408978222	0.745522290924428	0.899568230331321
Merged-chr9-83537649-4	chr9	83537557	83537757	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-10681.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	4.23834839267825	4.88229767155388	4.77774462017627	3.70859576123614	4.73830404426177	4.88007913599505	4.4524048122221	4.2364166284457	0.249146438954061	0.608840866241271	0.83079943024231
Merged-chr7-101092846-4	chr7	101092706	101092906	+	885.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15969.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	4.02401413500409	4.08690458632786	4.12491134947226	4.52161849303255	4.23876292564858	4.03826253663199	4.19948666911029	4.45924257366982	0.0436569376496082	0.919193847069376	0.970285021467879
Merged-chr10-57784848-4	chr10	57784745	57784945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021272)	promoter-TSS (NM_021272)	-78.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	7.5845941588072	7.54760845613175	8.13786153026555	7.67934045920398	7.3188307363134	7.8481571342854	7.46710212859204	7.09294623256184	-0.395212796358276	0.0866755789890563	0.321193306792068
Merged-chr6-30304522-4	chr6	30304393	30304593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001169576)	promoter-TSS (NM_001169576)	46.0	NM_009459	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	7.82213804938008	8.02121572816445	7.85334474633739	7.75624865113807	7.84748355229511	7.92274082013185	7.62524630824445	7.73211972176004	-0.0995406310923336	0.561496817352226	0.80494560024742
Merged-chr10-122564689-4	chr10	122564582	122564782	+	985.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040616)	TTS (NR_040616)	5209.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	4.84870948732508	5.26023901627539	5.71201064638253	5.68355490646174	5.48478558043104	4.80148652930554	5.63748277392846	5.46202488098686	-0.0752702901359395	0.838056192183763	0.938514815976212
Merged-chr14-61301502-3	chr14	61301404	61301604	+	890.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033788, intron 1 of 2)	RMER4B|LTR|ERVK	3830.0	NR_033788	67355.0	Mm.193728	NR_033788	ENSMUSG00000101505	1700109G14Rik	1700126G13Rik	RIKEN cDNA 1700109G14 gene	ncRNA	4.01016448258033	3.96303001219568	3.70315680409932	3.66249119300099	3.74896585435281	4.13452636715494	3.99293909014281	3.91379304320309	0.320723676113342	0.478781169744796	0.754690163973656
Merged-chr13-20379760-3	chr13	20379659	20379859	+	941.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 15 of 21)	intron (NM_080288, intron 15 of 21)	-93231.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.11379604231461	3.56012246179283	3.36655040353457	3.71888969449172	3.35459828206672	3.35746575861829	3.35415871467119	3.47461280814932	-0.301266454125599	0.585480909382844	0.818172766912737
Merged-chr18-39458950-4	chr18	39458854	39459054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	28291.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	5.74106323681443	6.08553382188442	5.93230012425602	5.99630239826421	5.71808713763131	6.01588791073434	5.60680502750317	5.94993282563828	-0.200875337989706	0.434917517743213	0.724140210419747
Merged-chr15-81360476-2	chr15	81360365	81360565	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_011399, intron 1 of 8)	intron (NM_011399, intron 1 of 8)	300.0	NM_011399	20524.0	Mm.222536	NM_011399	ENSMUSG00000022404	Slc25a17	34kDa|47kDa|PMP34|Pmp47	solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	protein-coding	4.59060503339609	4.62669618006975	4.15749527251667	3.6058231413422	4.59618401125384	4.79809962863438	4.28394946760769	4.15499613411566	0.400895374214135	0.411173539244354	0.706589119987297
Merged-chr14-47445093-3	chr14	47444973	47445173	+	834.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-26666.0	NM_144553	218977.0	Mm.240543	NM_144553	ENSMUSG00000037544	Dlgap5	C77459|C86398|Dap-5|Dlg7|Hurp|mKIAA0008	DLG associated protein 5	protein-coding	3.19473571649478	3.61891575103232	3.44053189545845	3.38904906622905	3.12652513529151	3.49843290383725	3.53304481028364	3.69142301939671	0.180799467339627	0.74053569498231	0.897950464781619
Merged-chr18-76978157-3	chr18	76978059	76978259	+	758.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33775.0	NM_001361227	76987.0	Mm.236127	NM_029826	ENSMUSG00000025421	Hdhd2	0610039H12Rik|3110052N05Rik	haloacid dehalogenase-like hydrolase domain containing 2	protein-coding	3.44939633650302	3.38806967728427	3.10703450933623	3.75362722863004	4.03176439864678	3.68319524665365	3.65736589004668	3.81521667899711	1.06705610202641	0.0594858152982533	0.257113240655476
Merged-chr13-111967210-4	chr13	111967103	111967303	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	99267.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	5.79557129438864	6.11784068303541	6.11370385561056	6.55102042410062	5.43310279439091	5.13514706659835	5.41114676355212	5.61216000390826	-1.27892316037122	1.71459910127929e-05	0.000445739406245283
Merged-chr6-98092373-4	chr6	98092268	98092468	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	100585.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	5.14894345855296	5.29807876786341	5.7652692813622	5.5398052544669	5.09485292607309	5.45560917234453	5.15849598884497	5.24562355743385	-0.403040071440998	0.192523699183495	0.492157893412656
Merged-chr4-103119791-3	chr4	103119695	103119895	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039081, intron 1 of 12)	CpG	405.0	NM_001039081	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	5.49710521504639	5.45926755970465	5.44031197538449	5.48178447591621	5.34210102882002	5.42862402539522	5.7684650008852	6.03542115168899	0.335529806437187	0.254842142171555	0.566310450490533
Merged-chr10-75300046-4	chr10	75299943	75300143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-16834.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	7.28966936889117	7.48689723986499	7.12072024777942	7.09865960980154	7.46416012879142	7.51986491089245	7.18944105385336	7.54370983087374	0.245814194191208	0.209790261088186	0.514316353034236
Merged-chr4-86580232-4	chr4	86580120	86580320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173400, exon 17 of 17)	3' UTR (NM_173400, exon 17 of 17)	4547.0	NM_178376	68441.0	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	7.17822322533638	7.35701694774581	6.86503049840834	7.33066476196873	7.0172322209599	7.20280213394497	6.93921343881119	7.15199524827882	-0.175201026919258	0.389683701918119	0.689983954192071
Merged-chr13-99187672-4	chr13	99187562	99187762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	2839.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	6.00764663843656	5.6210780108612	5.8761704733679	6.33883187695177	5.88759631616997	5.955580905967	5.75011917436997	5.84850090396727	-0.230814253415801	0.405055284828926	0.702085545628266
Merged-chr12-3981537-4	chr12	3981446	3981646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082483, intron 10 of 22)	intron (NM_001082483, intron 10 of 22)	26601.0	NM_001278583	18976.0	Mm.277996	NM_008895	ENSMUSG00000020660	Pomc	ACTH|BE|Beta-LPH|Clip|Gamma-LPH|Npp|Pomc-1|Pomc1|alpha-MSH|alphaMSH|beta-MSH|gamma-MSH	pro-opiomelanocortin-alpha	protein-coding	7.14797782718888	7.23351326596798	7.01669916445342	7.27588853154966	6.9508304974878	6.89546593791363	7.52638655541709	7.09764087799986	-0.0508118061756179	0.814012762903323	0.928193365437349
Merged-chr17-83645445-4	chr17	83645346	83645546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13551.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	7.78439966820694	7.77813308567455	7.61334711115854	7.92675424608831	7.67120535993352	7.59100957302885	7.83642904099562	7.6342242990237	-0.132989800290281	0.442442953870795	0.729114602217242
Merged-chr16-76406479-4	chr16	76406377	76406577	+	935.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32650.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	4.26064737855693	4.37446097434098	4.35738160759869	4.73612336042187	4.66092060829509	4.70219524122295	4.72983462307436	4.30761925565464	0.320957369911757	0.413007734012938	0.707980577012906
Merged-chr5-122422339-6	chr5	122422253	122422453	+	917.0972289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019805)	promoter-TSS (NM_019805)	-91.0	NM_019805	56317.0	Mm.37341	NM_019805	ENSMUSG00000029466	Anapc7	APC7|AW545589	anaphase promoting complex subunit 7	protein-coding	3.9674759958838	3.76649836392394	4.10800859917433	3.61925785358913	4.16310397660549	3.98823832365581	3.79609158244282	4.34548895184177	0.615662406986587	0.179340101436182	0.475573284473257
Merged-chr7-31053183-1	chr7	31053083	31053283	+	762.25	f0_balb.idr	intron (NM_194321, intron 4 of 7)	G-rich|Low_complexity|Low_complexity	1670.0	NM_052991	56188.0	Mm.1491	NM_019503	ENSMUSG00000036570	Fxyd1	0610012C17Rik|1110006M24Rik|Plm|Pml	FXYD domain-containing ion transport regulator 1	protein-coding	3.29954988259269	3.47542453764638	3.84007280993864	3.45686605066291	3.25081113595559	3.21440242540633	3.22657321113889	3.46945696809466	-0.828652945676973	0.129732765836976	0.400906041293221
Merged-chr7-49000994-4	chr7	49000882	49001082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	41909.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	6.71652653456624	6.84329873822541	7.20930380443529	7.22917344143475	6.99382020699779	6.52378188658533	7.01855729027013	6.92527072060065	-0.19699506816399	0.390428407994451	0.690570939884669
Merged-chr9-61671242-4	chr9	61671143	61671343	+	966.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	243267.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	4.81264157812403	4.86064879846547	5.09202773276217	5.05173792512824	4.96343590253341	4.59120291686911	5.03557371557914	5.23559372832155	0.0276552278157122	0.934641558982825	0.976356212091203
Merged-chr9-14500540-4	chr9	14500452	14500652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023153)	promoter-TSS (NM_023153)	-67.0	NM_023153	66070.0	Mm.245938	NM_023153	ENSMUSG00000004096	Cwc15	0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1	CWC15 spliceosome-associated protein	protein-coding	8.5248943805056	8.4572269294765	8.43004837627183	8.68149887920746	8.73497473136842	8.63899632335204	8.69681172626986	8.59177517169763	0.169679232604882	0.260900015530526	0.572842788797001
Merged-chr10-10481133-8	chr10	10481054	10481254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44B|LTR|ERVK	-8840.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	4.56952359242348	4.22356899155058	4.49303473348623	4.02293795850464	4.55610437310625	4.30712686162119	4.05699025955108	4.83535761972646	0.326078231541365	0.450598754141695	0.735357832948579
Merged-chr12-84009466-4	chr12	84009382	84009582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012006)	promoter-TSS (NM_012006)	-20.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	6.4901554054333	6.90163881061814	6.70046746471333	6.30207308883843	6.20582676212016	6.43687664767653	5.97001216335924	5.97221532089723	-0.671038080681507	0.00900781246904187	0.0732009457396885
Merged-chr3-68053793-2	chr3	68053693	68053893	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113419, intron 3 of 10)	intron (NM_001113419, intron 3 of 10)	-11009.0	NM_001113420	30953.0	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	2.92580489477192	3.17556014474477	2.78980877248236	2.92250242955774	2.85824705064689	3.3290634514516	2.97869295458733	2.98792868790588	0.348975977335023	0.568796276355793	0.809047403275829
Merged-chr3-81054275-4	chr3	81054173	81054373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	17857.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	6.6297889258015	6.66025320799882	6.58237208092475	7.20909918965853	6.74795654515126	6.60251420406501	6.9526704373346	6.62623057399776	-0.109030852769653	0.653581773582256	0.855108026281365
Merged-chr6-122575902-4	chr6	122575841	122576041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	22132.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	6.60889773888166	6.8694364319892	6.40668728416048	5.93097843682138	5.91511735423631	6.47665956173995	6.15246941090376	5.80628497315256	-0.576349770590102	0.0543875802715945	0.243506493349838
Merged-chr10-117848744-3	chr10	117848647	117848847	+	896.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2773.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	3.32296385204578	3.20217861464162	3.43193487937068	2.86080739211617	3.58203836802122	3.04226396688945	3.51603290998656	3.26382191908007	0.565261912616903	0.345029018001657	0.653357561969643
Merged-chr16-87634286-4	chr16	87634154	87634354	+	897.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64700.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	4.41808339544072	4.54469916689429	4.65576623920792	4.34531872955635	4.21093467629704	4.5920058651341	4.48200418679549	4.49987700525679	-0.0983505155643095	0.794406451522747	0.92053945907169
Merged-chr9-57148275-4	chr9	57148158	57148358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357409)	promoter-TSS (NM_001357409)	47.0	NM_028347	72774.0	Mm.35749	NM_028347	ENSMUSG00000032298	Neil1	2810450N13Rik|NEH1|Nei1	nei endonuclease VIII-like 1 (E. coli)	protein-coding	8.08518599086878	8.40965272834653	8.19975837971129	8.01817791966285	8.37923895183744	8.41887321438699	8.29194623907961	8.26449308588229	0.200344842094128	0.227453726253608	0.536115043419104
Merged-chr1-191186002-7	chr1	191185931	191186131	+	973.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2698.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	4.35654421030467	4.27189505780234	4.09264053320445	3.89281284630555	4.04352663117905	3.94477882151428	4.12260100835316	4.57251966645474	0.0937043257871863	0.832423948802894	0.935835439369668
Merged-chr10-8072727-4	chr10	8072594	8072794	+	941.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31B|LTR|ERV1	-116571.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	4.57335094310467	4.2675372058069	4.27474165453939	4.49794019365587	4.41626265417334	4.58433162520553	4.39186742588843	4.64497859037947	0.212995011011874	0.567723895318708	0.808331754798167
Merged-chr11-98790003-3	chr11	98789921	98790121	+	870.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-5495.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	3.62171873907683	3.38789992008481	3.46453863812793	3.14898183487295	3.63983910912845	3.63617498372316	3.39459048579027	3.46264239091982	0.461293252485951	0.375369480146395	0.678380861590302
Merged-chr4-33261442-4	chr4	33261355	33261555	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12668.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	5.58073727744549	5.99370453493051	5.47294221626371	4.98396778736999	5.70409493288724	5.7815420471082	5.26398109687383	5.21940205293294	-0.0536118313084349	0.878830922444359	0.954708519232108
Merged-chr2-32982888-4	chr2	32982753	32982953	+	833.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019488)	promoter-TSS (NM_019488)	-770.0	NR_151460	56017.0	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	4.00302434245943	4.08225768507062	4.00360752363028	4.06490349183418	4.08417728388201	3.72967298632695	4.12252431404471	4.09433219768598	-0.0509941426118626	0.90445364057998	0.964559678221358
Merged-chr18-3355066-2	chr18	3354966	3355166	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033457, intron 1 of 1)	MTC|LTR|ERVL-MaLR	-17477.0	NM_001110852	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	2.90379944709515	2.80010397578194	3.12380892296924	2.43605530641292	3.01321214703626	2.67162981026634	2.63251229517053	2.90260714012378	-0.0959170580356648	0.892824044053468	0.959902161946708
Merged-chr10-80995385-4	chr10	80995255	80995455	+	931.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	6010.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	4.12714623831629	4.11978243512444	4.3422269321267	4.1327992845853	4.13080291885489	4.25265802059768	3.85551706980714	4.17108783309694	-0.177228072446969	0.667185224649436	0.862274690130043
Merged-chr2-137119036-3	chr2	137118938	137119138	+	977.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2518.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	4.29838711694177	4.79537273502759	4.78575785329656	4.51341863473517	3.84356376874439	4.23017928173804	4.03230100854392	4.25001146590309	-1.27905964933934	0.00236424939670306	0.0265852934925636
Merged-chr9-65545804-4	chr9	65545688	65545888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34299.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	8.07733526156703	8.00273821759339	8.19386047095382	8.01726174746618	7.80823330419634	7.74589651685828	8.07144687931507	8.0476266484961	-0.189822479689517	0.261789386444678	0.573733703910914
Merged-chr1-43501469-3	chr1	43501391	43501591	+	933.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	ORR1F|LTR|ERVL-MaLR	55740.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	3.94354407239985	3.65282233673893	4.24597197712701	3.97243993611131	4.03048661915196	3.85239076431516	3.92741372780675	3.84064430763325	-0.130835694300549	0.772759277330163	0.911052408089747
Merged-chr2-33887257-4	chr2	33887152	33887352	+	902.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 1 of 9)	CpG	694.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	4.17969031694582	4.21533800798747	4.44310139100174	4.21387746979406	4.09558094981521	4.61256303975471	4.25505367307033	4.400043818161	0.198732129478076	0.618768958058297	0.836062966920086
Merged-chr1-173973392-3	chr1	173973308	173973508	+	899.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008327, intron 3 of 6)	intron (NM_008327, intron 3 of 6)	9436.0	NM_008327	26388.0	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	5.66408260215323	5.60825367984668	6.61535292076265	6.19383091777705	3.5386177428987	3.95625123250634	4.01935403851191	4.1706372242699	-5.53867935725748	1.12132738466767e-18	3.19259847653039e-16
Merged-chr13-34344286-5	chr13	34344171	34344371	+	723.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033167, exon 1 of 11)	exon (NM_001033167, exon 1 of 11)	911.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	3.0999439475121	2.93155605355262	3.10039702977503	2.90671165990629	2.49710359916911	2.83196214020079	2.85209620703339	3.09856464941635	-0.783264738273721	0.246912465371041	0.558168726560377
Merged-chr3-9783335-3	chr3	9783256	9783456	+	766.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 1 of 7)	intron (NM_053182, intron 1 of 7)	50323.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	3.47082449542482	3.0432981829672	3.5633458464334	3.37006918024291	3.0035667363924	3.05776879824453	3.07341260122196	3.01633604230679	-1.33919707126762	0.0240801910021642	0.144834333498572
Merged-chr7-24175104-4	chr7	24175018	24175218	+	750.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029933)	promoter-TSS (NM_001029933)	96.0	NM_001029933	232966.0	Mm.435485	NM_001029933	ENSMUSG00000068962	Zfp114	Gm1957|Zfp110	zinc finger protein 114	protein-coding	3.66911704573823	3.7996280904461	3.66961015457303	3.86777482993365	3.44675159323154	3.84268041245431	3.94634206555902	3.82316092248401	0.0245775720433523	0.959070257058918	0.985377888348831
Merged-chr13-23745610-4	chr13	23745504	23745704	+	985.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175653)	promoter-TSS (NM_175653)	-83.0	NM_175653	319148.0	Mm.262517	NM_175653	ENSMUSG00000069310	Hist1h3c	H3-143	histone cluster 1, H3c	protein-coding	5.25555633809113	5.52874099687117	5.32011357762276	5.14431997674021	5.39154054508507	5.52602740675329	5.81561788187096	5.40625426597316	0.406652764595542	0.164489270837466	0.454753682544816
Merged-chr3-88460154-6	chr3	88460041	88460241	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163489, intron 1 of 14)	intron (NM_001163489, intron 1 of 14)	-1040.0	NM_001163490	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	4.92929206937505	4.29874576667604	4.99073042337586	4.01787989097483	4.62755693082214	4.62198428983614	4.59235773526427	4.65033322245025	0.0220415635378376	0.959416044457578	0.985513818852278
Merged-chr3-15284628-4	chr3	15284531	15284731	+	987.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47671.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	5.74714146438714	5.54062772091177	5.6019895657634	5.50645041815246	5.57087375805031	5.64073886281173	5.49432681821019	5.27679132456617	-0.152209681938479	0.577163186338217	0.813924639099529
Merged-chr15-93273114-2	chr15	93273014	93273214	+	769.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346785, intron 1 of 7)	intron (NM_001346785, intron 1 of 7)	2065.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	2.98587601379665	2.71968541136579	2.92391819094462	3.02762550272257	3.1146609909329	3.03162256842988	2.97568044424576	3.15507593322209	0.607788601065049	0.306593539304694	0.619040125213991
Merged-chr7-34195826-4	chr7	34195703	34195903	+	840.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026549, intron 3 of 6)	B2_Mm2|SINE|B2	867.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	4.08850677638534	3.71034451653152	4.0015046461385	3.71471135346743	4.01956054048668	3.7550229537696	3.7370234512034	3.9990261046387	0.03511677969274	0.939070047029064	0.977909452210349
Merged-chr14-73509949-4	chr14	73509840	73510040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026119)	promoter-TSS (NM_026119)	-109.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	6.68589670806487	6.83951123563407	6.67132540850047	6.55805624893059	7.32320013162988	7.09194069118455	6.91880533868976	6.97415262964016	0.572233801815651	0.00561765646567338	0.0517816888449947
Merged-chr3-105023551-4	chr3	105023435	105023635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	29418.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	7.27367707902093	7.40526980121739	7.2306827100866	7.33558008927691	7.37269893862172	7.36230936625397	7.64237188746131	7.5766436526327	0.235193418127744	0.191091851067933	0.490417410029363
Merged-chr5-72224641-4	chr5	72224562	72224762	+	954.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	21319.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	4.19295452288856	4.4603612122586	4.53107246782572	4.50908141240924	4.18426966891593	3.98967198771469	4.47236981386366	4.2383945087748	-0.487644925441097	0.22404570969222	0.532128184797041
Merged-chr4-114983340-4	chr4	114983188	114983388	+	871.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025647, intron 1 of 5)	intron (NM_025647, intron 1 of 5)	3940.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	3.80271453752122	3.93698828690274	3.98995797826634	3.65606372913805	3.87645344833699	3.63883165323772	3.73679709452131	3.74966334311266	-0.246388507250975	0.594670984961468	0.823531813292476
Merged-chr16-15889683-1	chr16	15889583	15889783	+	546.0	f0_c57.idr	TTS (NM_007679)	TTS (NM_007679)	2397.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	3.60676849377447	3.21510740126304	3.65792317196049	3.21293824157227	3.69770472396151	3.67242494825242	3.64212131535333	3.44046338284419	0.629436914617881	0.226193784410835	0.534714293609392
Merged-chr8-117481997-4	chr8	117481920	117482120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16255.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	7.2637644049964	7.28353643029933	6.82071767781035	6.96592613756419	7.27448946152347	7.25152280756225	7.30889282147439	6.85950071878825	0.127710162846769	0.550363230918772	0.798595515423152
Merged-chr7-51862279-4	chr7	51862168	51862368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001115087)	promoter-TSS (NM_001115087)	-1.0	NM_001115087	100040608.0	Mm.322643	NM_001115087	ENSMUSG00000092118	Fancf	A730016A17	Fanconi anemia, complementation group F	protein-coding	7.77036456360994	7.51488466969436	7.93104370772165	7.95440450448546	7.62777426423604	7.35866195594637	7.85844275155856	7.61025776942689	-0.235868205359869	0.227760010538286	0.536465946363434
Merged-chr12-83520414-4	chr12	83520329	83520529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030246)	promoter-TSS (NM_030246)	-37.0	NM_030246	73828.0	Mm.38238	NM_030246	ENSMUSG00000021222	Dcaf4	1110018E21Rik|Wdr21	DDB1 and CUL4 associated factor 4	protein-coding	7.29081899747218	7.56237643453774	7.19244995150972	7.53938850684391	7.33266626179059	7.33422932720282	7.55666571026079	7.25463608691727	-0.0560280258673811	0.770063949148468	0.910036058448951
Merged-chr2-116899740-2	chr2	116899640	116899840	+	735.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040335)	promoter-TSS (NR_040335)	-412.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	3.13069051120386	3.08072077361099	3.35592111943688	2.97224300004597	3.22236679136936	3.36158918678789	3.11992252000028	3.18938706431927	0.360063398586298	0.517970480272713	0.779183397411744
Merged-chr13-37833716-4	chr13	37833603	37833803	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	6310.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.52071851847297	6.54008823277821	5.75860392401079	6.65434952486091	5.88288042772844	5.34779907104421	5.72926848866821	6.06272081679635	-0.98342898508953	0.00128952714289787	0.0165174109239387
Merged-chr4-132158423-4	chr4	132158319	132158519	+	883.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13933.0	NM_013622	18386.0	Mm.5243	NM_013622	ENSMUSG00000050511	Oprd1	DOR|DOR-1|Nbor|mDOR	opioid receptor, delta 1	protein-coding	4.21716037398025	3.84380391482804	3.70001175411591	3.67757346089204	4.0481050501645	4.03589115682526	3.56659309323349	4.00556991305801	0.171532475055319	0.721085380958182	0.888617497696901
Merged-chr11-102407556-4	chr11	102407460	102407660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026542)	promoter-TSS (NM_026542)	-43.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	7.24005391793676	7.26054028563035	6.99499247273764	6.87172513503023	7.40686040753434	7.05036775254627	7.20508008192649	7.22555527521976	0.194519375875507	0.337641860205579	0.647406119486367
Merged-chr2-94470936-3	chr2	94470860	94471060	+	721.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32774.0	NM_001349003	11800.0	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	3.46779436889127	3.24593471389447	3.29194313920017	3.46346482115236	3.48401490963163	3.52582250283887	3.55932639401315	3.75765249764946	0.690849856671076	0.171116808401611	0.464191596677399
Merged-chr11-79577940-4	chr11	79577841	79578041	+	843.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 57 of 57)	intron (NM_010897, intron 57 of 57)	-13271.0	NM_175543	268451.0	Mm.130656	NM_175543	ENSMUSG00000017639	Rab11fip4	A730072L08Rik|RAB11-FIP4|mKIAA1821	RAB11 family interacting protein 4 (class II)	protein-coding	4.4031572604134	4.57173268354373	4.57114412524183	4.37288759705096	4.74607182009936	4.43973930304633	4.42780505285161	4.60672279392582	0.216055540930763	0.55309227863934	0.799974396526481
Merged-chr2-33371466-4	chr2	33371345	33371545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290572)	promoter-TSS (NM_001290572)	49.0	NM_001290570	241308.0	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	6.88974744061	6.74551813359298	6.82257272597323	6.89772791032532	6.94307532389794	7.05399534707129	7.10733012956524	6.65289569954753	0.149932875723556	0.460913027653817	0.742818647723839
Merged-chr1-184845924-4	chr1	184845807	184846007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133684)	promoter-TSS (NM_133684)	-60.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	8.25491225959126	8.42594577080491	8.25040494298012	8.56389366439051	8.31932038544392	8.3741801604976	8.40613179315917	8.23321395585249	-0.0692443790009486	0.66778369236584	0.862676450816977
Merged-chr12-91710712-4	chr12	91710613	91710813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	L1Md_A|LINE|L1	75723.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	5.64644799497627	5.56633579352714	6.21085116312119	5.59376845907582	5.70590706183591	5.65632013423328	5.74338008905698	5.58967955820141	-0.156285019166104	0.584540444292173	0.817674741209741
Merged-chr11-96977821-4	chr11	96977728	96977928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080964)	promoter-TSS (NM_001080964)	-140.0	NM_001080964	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	9.04372207647727	9.16334525014847	8.7745006363614	8.65247672214966	8.74297702574409	9.04437649041676	8.6270143311624	8.67886346599719	-0.173639863700128	0.343200482693301	0.6518830964836
Merged-chr2-25255438-4	chr2	25255335	25255535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252541)	promoter-TSS (NM_001252541)	-4.0	NM_177344	227615.0	Mm.213925	NM_177344	ENSMUSG00000078201	Tmem203	C730025P13Rik|Hbebp1	transmembrane protein 203	protein-coding	6.52792377781712	6.26404997401563	5.92451014747242	6.32107347988906	6.61784644497219	6.81160158618944	6.26904878997237	6.757438233212	0.512439346770788	0.0369755590216083	0.191604784187468
Merged-chr9-116063262-4	chr9	116063178	116063378	+	916.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028638, intron 14 of 14)	ORR1E|LTR|ERVL-MaLR	112085.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	4.35572557572223	4.63159543611106	5.15122471676432	5.16141183380739	4.67386165847029	4.3273500991738	4.43297713168762	4.73977096065247	-0.677180355107144	0.0975046832809241	0.342138814456638
Merged-chr5-138207426-3	chr5	138207325	138207525	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13111.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	6.83458108059059	6.72186959778501	6.67720982745258	6.98546973540297	3.88741605327309	4.30341688524997	4.1311870784891	4.28779242908034	-6.27804744187597	1.25488083866075e-26	9.70670394783359e-24
Merged-chr6-115668245-4	chr6	115668122	115668322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029780, intron 1 of 16)	ORR1E|LTR|ERVL-MaLR	7666.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	6.52697827726409	7.05227853268514	6.47904305120678	6.44190831112064	6.33081691844697	6.6879602363907	6.08269918825751	5.86573586155141	-0.547079013608472	0.0496717391079697	0.23076722916038
Merged-chr10-93309785-4	chr10	93309700	93309900	+	986.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001322265, intron 1 of 4)	intron (NM_001322265, intron 1 of 4)	1359.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	5.38511870941854	6.09194907176602	5.13463301469937	5.31632976481776	5.38583961365364	5.16826677436419	5.00193345855293	4.98450468276426	-0.689937345166942	0.0531566939834282	0.240444860259687
Merged-chr18-73574049-12	chr18	73574027	73574227	+	945.569458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039214, intron 1 of 1)	intron (NM_001039214, intron 1 of 1)	1422.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	4.24841919265087	3.95093416096348	4.15901502162324	4.1626630788467	4.24865259978186	4.28438107565006	4.14102594565489	4.33039510092652	0.295385535593917	0.455215061965184	0.738815095268454
Merged-chr12-52097765-4	chr12	52097670	52097870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029760)	promoter-TSS (NM_029760)	24.0	NM_029760	76826.0	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	6.69871818522459	6.73401233738709	7.04155362083079	6.97608892941632	6.70791237107047	6.76659095201242	6.69550478553732	6.56818292626849	-0.269242634867171	0.192033836498778	0.491538219433335
Merged-chr19-10304989-4	chr19	10304896	10305096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198114)	promoter-TSS (NM_198114)	-119.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	6.65503591304194	6.77236349502984	6.40916000434787	6.4009866665236	6.48245081584919	6.86023963344664	6.42956988206172	6.69554322117842	0.0857854816834842	0.707154187130104	0.882396225404233
Merged-chr14-22845642-3	chr14	22845531	22845731	+	912.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 6 of 6)	intron (NM_028275, intron 6 of 6)	248940.0	NR_033550	791307.0	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	-	predicted gene 10248	ncRNA	4.09436223058689	4.58467755989324	4.50163400761189	4.98831012394909	3.87031115966755	3.85795800511681	4.17869281196937	4.57373143143077	-1.0416725615426	0.0297303384623111	0.166261452027722
Merged-chr2-174440052-4	chr2	174439916	174440116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022325)	promoter-TSS (NM_022325)	-977.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	6.50248995781745	6.26923722305717	6.1120948102237	6.02602478189038	6.59482184193424	6.59631922503361	6.28137648778352	6.51489423066361	0.415594494324982	0.0766369735449173	0.299212502877169
Merged-chr9-32198921-4	chr9	32198835	32199035	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195632, intron 9 of 21)	(CAAAA)n|Simple_repeat|Simple_repeat	-25314.0	NM_177379	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	4.83537940425405	4.93867491307685	5.01776079069829	4.9681110468911	5.25025238951683	5.43306573362756	4.64893120502274	4.90862980764217	0.299341768857645	0.384190994204356	0.685759481012083
Merged-chr4-139229405-3	chr4	139229293	139229493	+	796.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	35282.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	2.99788679616054	2.78689331505001	2.82793732399763	2.93702414164081	2.67382933756255	2.73515689633332	2.7565246381096	2.6304422669011	-0.936173121572346	0.144647279130587	0.423797463707514
Merged-chr12-112800631-4	chr12	112800505	112800705	+	905.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8370.0	NM_145450	217887.0	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Clba1|Flj20080	cDNA sequence BC022687	protein-coding	4.2649575588584	4.51408999116548	3.91666066857656	3.98082504205413	4.24177717614768	4.39311963765912	4.20243876000494	4.21852627567939	0.196016976530089	0.641860782338825	0.848925046283704
Merged-chr18-78142219-4	chr18	78142115	78142315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171011)	promoter-TSS (NM_001171011)	-96.0	NM_001171011	108052.0	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	7.24684723250033	7.32438750892251	7.53781547023074	7.54135963363335	7.53030648874032	7.42557201680393	7.61120627944227	7.5055934541481	0.126629381823143	0.480615907794356	0.756060899899244
Merged-chr14-79516454-4	chr14	79516367	79516567	+	797.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	793.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	3.89412784890891	3.97763710131184	3.50112776996857	4.0716124161735	4.17021378328371	3.80226261822591	3.67058658968743	3.79165545628105	-0.0150102168674743	0.975739998738577	0.991347073148764
Merged-chr17-17895592-4	chr17	17895493	17895693	+	942.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7769.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	4.95570031910132	4.85328523934913	4.81395250157784	5.01224005530926	5.16675286052945	4.74367756594271	4.82814236785394	4.6924986644679	-0.0605033964352431	0.858303897084955	0.946576014812915
Merged-chr7-121075097-4	chr7	121074983	121075183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030691)	promoter-TSS (NM_030691)	-553.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	6.70891297032043	6.81520784626129	7.09275587714187	6.90402141914059	6.89550817692199	7.11174711252987	6.88745095624907	6.83693542095503	0.0643037589058714	0.749545583477376	0.901366870862243
Merged-chr13-113636108-4	chr13	113636025	113636225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17561.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	6.58337077057416	6.27272666342609	6.56829812436947	7.03749580132229	6.53959317360388	6.64352794529745	6.73010841676212	6.86674160679792	0.0472451094941706	0.849194995475216	0.943018215212189
Merged-chr11-3185115-4	chr11	3185016	3185216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 4 of 32)	intron (NM_030207, intron 4 of 32)	8347.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	7.77615890630118	7.81333634694309	7.38051253987028	7.3438529081971	8.26083983038258	8.26232752491785	8.29677162987039	7.7237946990334	0.734363256389308	0.000485369295284396	0.00754984726159267
Merged-chr2-59889442-4	chr2	59889346	59889546	+	790.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-6840.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	4.05881114606761	3.75766029955558	4.55898552476909	4.13934941038522	4.24838281044106	3.96185489576935	4.2293492573447	4.55584644171751	0.270679990661083	0.553379421794286	0.800173960261692
Merged-chr3-69127762-4	chr3	69127659	69127859	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008467)	promoter-TSS (NM_008467)	-667.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	4.58716734005252	4.280079361113	4.34214121068459	4.17996123622529	4.30444058121612	4.64255340154047	4.32281694850285	4.65710784658853	0.331550061976089	0.393074161267224	0.692266411611797
Merged-chr5-114444166-4	chr5	114444061	114444261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023556)	promoter-TSS (NM_023556)	-108.0	NM_001306205	17855.0	Mm.28088	NM_023556	ENSMUSG00000041939	Mvk	2310010A05Rik|AI256848|AI414037|MK	mevalonate kinase	protein-coding	8.37311944485055	8.56947098371539	8.0118495731304	8.27611279180179	8.56361763570015	8.51985695587788	8.60689514304904	8.15425718260098	0.190370834649737	0.310899546111414	0.623003793544621
Merged-chr11-62551089-4	chr11	62550990	62551190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002875)	promoter-TSS (NR_002875)	-81.0	NM_011664	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	7.78607141391551	8.11143492580204	7.77948010944112	7.73491643048429	7.96053402550964	8.01109221347884	8.02998714243898	7.76628818084699	0.111663865843035	0.528607681263467	0.785158259471775
Merged-chr11-120458054-4	chr11	120457947	120458147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025560)	promoter-TSS (NM_025560)	23.0	NM_001356385	66431.0	Mm.45063	NM_025560	ENSMUSG00000039670	Oxld1	1810049H13Rik	oxidoreductase like domain containing 1	protein-coding	5.94467346537311	5.9709864438534	5.87874408221204	5.53342324823143	5.71018136758831	5.93462676303519	5.70404748116889	6.19607399586576	0.10955606440531	0.691759863522395	0.87467626526963
Merged-chr17-46773575-2	chr17	46773475	46773675	+	707.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025966)	TTS (NM_025966)	940.0	NM_025966	67101.0	Mm.358702	NM_025966	ENSMUSG00000062619	2310039H08Rik	-	RIKEN cDNA 2310039H08 gene	protein-coding	2.62705835468482	2.6783185594679	2.62730709508622	2.62104531840462	3.02203222125924	2.93498079505838	2.87607590799921	2.9431095175816	1.44268128349458	0.0187974561697426	0.12275820153453
Merged-chr1-131561572-2	chr1	131561472	131561672	+	774.791626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	33669.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	3.21318100751258	3.25890020409161	3.27382182316457	3.23055140905292	2.98609214834425	3.50217483539055	3.26146240534023	3.58364091531896	0.375461965069303	0.503127334136803	0.770205163194888
Merged-chr10-20893564-4	chr10	20893485	20893685	+	943.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58962.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	4.65719461595681	4.45737914598674	4.57076483401733	4.62070550494722	4.84896040074132	4.750869096943	5.50677175383094	5.14030189024829	1.03402071608525	0.00416828517609374	0.0413972105103422
Merged-chr18-56753664-4	chr18	56753563	56753763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010721)	TTS (NM_010721)	45850.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	6.07861643511305	6.20721709489761	6.45630794114767	6.28382940825887	5.88401310020415	5.59171196180432	6.06920015293223	6.19490418707043	-0.479760839089263	0.0600316138411094	0.2585460302291
Merged-chr14-30643572-2	chr14	30643472	30643672	+	698.3000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10803.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	2.8244001429927	2.73144444856759	2.8247517904272	2.62086041488555	2.90469553728408	2.6568485491452	2.75263315982925	2.99502743604483	0.426358083786901	0.499407754836266	0.768358649954405
Merged-chr7-4752652-4	chr7	4752542	4752742	+	700.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172895)	TTS (NM_172895)	260.0	NM_183406	333182.0	Mm.29625	NM_183405	ENSMUSG00000051811	Cox6b2	1700067P11Rik|BC048670|COXVIB2	cytochrome c oxidase subunit VIb polypeptide 2	protein-coding	3.99015952735495	3.78439357097189	3.53937855461677	3.71421102832963	3.76235696271728	3.59340762601	3.69329987967807	3.80729633562229	-0.133221693199013	0.776823716841078	0.913015118902433
Merged-chr2-128714518-3	chr2	128714412	128714612	+	687.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	15597.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	4.05319325625708	4.05732106053236	4.10146790743422	4.2895667665203	3.90231053361101	3.84450543495748	4.12914784557575	4.42634690836099	-0.117009206585183	0.789356725546711	0.918416051592211
Merged-chr7-30553566-4	chr7	30553472	30553672	+	910.4583130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_128568)	TTS (NR_128568)	270.0	NM_001012401	243912.0	Mm.34885	NM_001012401	ENSMUSG00000036854	Hspb6	AA387366|Gm479|Hsp20	heat shock protein, alpha-crystallin-related, B6	protein-coding	2.32969157330882	2.35563367941652	2.56008443576866	2.32139641821363	2.87692863797835	2.73847371309979	2.7461215175103	3.07736777609832	2.52783917700871	0.000328262867757609	0.00546176312859254
Merged-chr2-93129395-4	chr2	93129264	93129464	+	912.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58184.0	NM_001356536	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	4.1739994242509	4.08806550910774	4.2208256376165	4.02105892169894	4.26353932660479	4.15027321727904	4.10905204788416	4.701385930784	0.513757702042269	0.21334727173425	0.518713125248401
Merged-chr7-28373401-4	chr7	28373301	28373501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083912)	promoter-TSS (NM_001083912)	-739.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	7.09262986412427	7.59403435786878	7.18857700704261	6.932371436382	7.45131664543166	7.59399846782782	7.24028305086885	7.19488654796273	0.215549654185783	0.32942043113291	0.640755776018183
Merged-chr8-25694854-4	chr8	25694766	25694966	+	901.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081269, intron 15 of 22)	intron (NM_001081269, intron 15 of 22)	-25182.0	NR_121642	71910.0	Mm.385055	NM_028000	ENSMUSG00000031570	Plpp5	1810019D05Rik|2310022A04Rik|AW045471|Ppapdc1|Ppapdc1b	phospholipid phosphatase 5	protein-coding	4.96668076957018	4.99748668293247	5.62744831659768	5.72319038519785	4.37903068705324	4.65390041044397	4.49623170329068	4.35949031553134	-1.8661786960655	1.29798203217482e-06	4.43325638522895e-05
Merged-chr16-94556446-4	chr16	94556344	94556544	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13762.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	4.82878345089284	5.13178645819695	4.82958050117472	5.06937110376223	4.51731639276394	4.30280660603939	4.94511815647625	5.12134583298623	-0.442040138595832	0.244652445505377	0.555808536831526
Merged-chr14-20372052-4	chr14	20371952	20372152	+	978.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024512, intron 7 of 13)	MTD|LTR|ERVL-MaLR	16858.0	NM_134081	108671.0	Mm.2871	NM_134081	ENSMUSG00000021811	Dnajc9	5330419I01Rik|AU020082	DnaJ heat shock protein family (Hsp40) member C9	protein-coding	5.58314872566117	5.543952982204	5.53125084701032	5.90115204407897	5.35317398807435	5.40597964188261	5.65472236945715	5.07988745791109	-0.477637183140961	0.10734012363121	0.361382260156614
Merged-chr14-58201476-4	chr14	58201374	58201574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	128788.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	5.75585908938059	5.46430619929984	5.36230993953141	5.58430835013416	5.52087542122461	5.53812164705566	5.48036916507856	5.4188141735975	-0.1040257242255	0.702939741718658	0.880452322371581
Merged-chr12-80867191-3	chr12	80867085	80867285	+	938.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 3 of 6)	intron (NM_001242419, intron 3 of 6)	57262.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	3.59076250344946	3.78316980224272	3.74097228467871	3.88815124904612	3.36244260072857	3.19154155963638	3.52349128864857	3.47892844475565	-1.22530437504471	0.0179203502059668	0.118821854430416
Merged-chr10-80566487-4	chr10	80566350	80566550	+	864.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_078477)	TTS (NM_078477)	-4890.0	NM_025852	66932.0	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	3.93351440138702	3.98054629711344	3.66080907052892	3.48786637948111	4.08963290095274	3.95358626208972	4.2571669446802	3.98008562276754	0.858296196942143	0.0605865061439064	0.260068985812033
Merged-chr6-5233864-3	chr6	5233754	5233954	+	737.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173006, intron 5 of 8)	intron (NM_173006, intron 5 of 8)	22379.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	3.88009343207243	4.07268583182668	4.09214139245269	3.71734379722114	3.32977312695985	3.42827163387073	3.55575866966117	3.50765188510481	-1.57919654506853	0.00202678103981136	0.0236266373456817
Merged-chr16-49801679-4	chr16	49801588	49801788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53966.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	7.21246940936571	6.92005505765678	7.1014682095706	7.39402798371067	7.19604008595739	6.85072071855613	6.98113321782947	7.11975282150944	-0.176967873696996	0.394856508079919	0.693825698346514
Merged-chr4-155563518-4	chr4	155563430	155563630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159637)	promoter-TSS (NM_001159637)	-285.0	NM_001159637	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	8.7970492014508	8.86382796939282	8.53258894964553	8.5000158579898	8.80803870650099	8.98054008988071	8.774489949772	8.4920686114643	0.118614113703012	0.500842604923015	0.769017904448726
Merged-chr2-156196761-4	chr2	156196686	156196886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172674, exon 1 of 18)	5' UTR (NM_172674, exon 1 of 18)	139.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	8.30213494915005	8.42139304404529	8.04398621593137	7.9305608299373	7.94859398321597	8.33693145654389	8.01229380922466	8.2704979854185	-0.0467535475920325	0.806864890893887	0.92554367415935
Merged-chr9-50479896-3	chr9	50479799	50479999	+	785.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14626.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	3.62546261115266	3.77815736251952	3.09492162178802	2.90484625875087	3.43632681642081	3.47418501839417	3.60968770365108	3.29459973066028	0.181145528074095	0.768114500802725	0.909266558474345
Merged-chr8-25980880-4	chr8	25980767	25980967	+	979.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029037, exon 5 of 5)	3' UTR (NM_029037, exon 5 of 5)	-4123.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	5.01172104824212	4.86841773858743	4.80913746546498	4.91160530823493	4.63368989863492	4.8281539974548	4.50183920980522	4.8773804058218	-0.391599585924592	0.244713574093197	0.555808536831526
Merged-chr3-122466283-3	chr3	122466196	122466396	+	828.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013867, intron 3 of 11)	intron (NM_013867, intron 3 of 11)	-17273.0	NM_001355264	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	3.37491114483181	3.26015907231364	3.68238779876766	3.46425641301241	3.45053386507304	3.15904169880322	3.47212917029688	3.53610493690368	-0.131026382368818	0.805249224191995	0.925171083261684
Merged-chr2-153117288-4	chr2	153117153	153117353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	8785.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	7.66434476807369	7.68890044977561	7.87798146269041	8.0923282408113	7.28738994123389	6.85504746071128	7.71559741257087	7.59247530033851	-0.584669638476802	0.011071129800045	0.0848258286369652
Merged-chr12-119370048-4	chr12	119369960	119370160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73350.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	6.33120827957128	6.43096893224823	6.40367455169059	6.64130232685497	6.55402255030506	6.48986729432412	6.10270268288094	5.94540642455901	-0.238241958785099	0.340693464816778	0.649787696691071
Merged-chr10-34171912-4	chr10	34171816	34172016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 2 of 5)	intron (NM_172508, intron 2 of 5)	35635.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	7.38908230813404	7.41129440330309	7.39034982514085	7.34563617762066	7.26314089640183	7.48601103706289	7.52749465492909	7.12339427301814	-0.034541664672255	0.851728608958461	0.944100387750672
Merged-chr15-98533324-3	chr15	98533153	98533353	+	800.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153345, intron 2 of 10)	intron (NR_153345, intron 2 of 10)	1016.0	NM_001359827	69612.0	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	3.29781741152022	3.17865212952035	3.18058075789322	3.04926377591776	3.14106062455985	3.22937432560376	3.28525502272776	3.59515902560897	0.554150884834509	0.312400447209001	0.624371074068891
Merged-chr17-6967836-4	chr17	6967747	6967947	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6691.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	6.2570883310927	6.50415048371293	6.72487418984825	6.41702255597169	5.36235438495289	5.29611233374922	5.51216516115989	5.53633876649024	-1.69469695404583	8.45835480691374e-11	6.55835769936071e-09
Merged-chr10-68725199-4	chr10	68725083	68725283	+	966.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	1437.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	3.84671174178768	4.09540532720662	4.17641735899089	4.45695108235456	4.39182111371927	4.39822997531749	4.25127612232718	4.74963177051798	0.658259107905458	0.129425472171533	0.400360889731452
Merged-chr7-45731261-3	chr7	45731162	45731362	+	887.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_017465, exon 6 of 7)	exon (NM_017465, exon 6 of 7)	-5446.0	NM_027055	69363.0	Mm.45607	NM_027055	ENSMUSG00000070563	Spaca4	1700008E09Rik|AV043694|Samp14	sperm acrosome associated 4	protein-coding	3.87122281965964	4.02743518101824	4.01226828265408	3.40216123615496	3.67824383098547	3.89007969261508	3.75347920615374	3.96465826485995	-0.0533578983209871	0.91411634942515	0.967873172075434
Merged-chr4-99177463-4	chr4	99177374	99177574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16460.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	6.23268010496339	6.1705159160544	6.47757633806972	6.46047827831244	6.23806843711086	6.00904196723677	6.1432070490005	6.20997191305889	-0.288747539294709	0.211465495945589	0.51607702584897
Merged-chr16-85084351-4	chr16	85084245	85084445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 3 of 15)	intron (NM_001198825, intron 3 of 15)	89362.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	6.44314948210167	6.18707040745948	6.7363243870498	6.64008254089855	6.38729082261301	6.12189483361758	6.7683972205428	6.57094360855844	-0.0547707300272061	0.826884423991337	0.933582996245152
Merged-chr2-154712414-4	chr2	154712327	154712527	+	838.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55401.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	3.87337409501056	3.72665892927171	3.82228671453847	3.91031080465577	3.94139716145203	4.09368455551674	4.0860480208366	3.76646178842454	0.379811648234422	0.384768783068843	0.686251531347055
Merged-chr14-12284197-4	chr14	12284088	12284288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146051)	promoter-TSS (NM_146051)	-15.0	NM_001284384	218734.0	Mm.44068	NM_146051	ENSMUSG00000033111	3830406C13Rik	-	RIKEN cDNA 3830406C13 gene	protein-coding	5.36255648380783	5.11642607834616	5.4227949514579	5.22400229950462	5.38873513041068	5.47800087974644	5.80845160033747	5.81334226130742	0.612355785168254	0.0340763933427979	0.182217431548496
Merged-chr17-22361496-6	chr17	22361349	22361549	+	996.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176962)	promoter-TSS (NM_176962)	-4.0	NM_001347330	224598.0	Mm.390945	NM_145484	ENSMUSG00000044501	Zfp758	BC021442	zinc finger protein 758	protein-coding	5.29435311461455	5.56834167972386	5.68025200564082	4.98074483423438	5.55192622908567	6.22725461464063	5.83974592011509	6.20997696518614	0.971897760565102	0.00228250714014181	0.0259034718954327
Merged-chr16-23991343-4	chr16	23991232	23991432	+	844.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2480.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	4.31166762324115	4.49085938074921	3.66782763348891	3.95482070932009	4.48415165581938	4.3973119067	4.29257057501277	4.17561098312198	0.497831308078347	0.270868886270871	0.582670886352706
Merged-chr1-79671393-4	chr1	79671321	79671521	+	886.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183027, intron 1 of 4)	intron (NM_183027, intron 1 of 4)	551.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	4.50238053691312	4.12569045162096	4.25881880777102	4.64103958387122	4.38045251100128	3.96091253048073	4.28371332083597	4.06309748690731	-0.526133931294413	0.217077186902568	0.523898453413959
Merged-chr6-112930282-4	chr6	112930187	112930387	+	793.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 1 of 21)	intron (NM_080448, intron 1 of 21)	16979.0	NM_080448	259302.0	Mm.236401	NM_080448	ENSMUSG00000030257	Srgap3	AI452337|Arhgap14|D130026O08Rik|Gbi|MEGAP|WRP|mKIAA0411	SLIT-ROBO Rho GTPase activating protein 3	protein-coding	4.05607461493793	4.20200064047692	4.00740039616617	4.15874031658976	4.03746091648954	3.96822290818079	4.1316560497525	4.27525595296699	-0.0193566864702358	0.96233255741231	0.986517687358511
Merged-chr4-129812201-4	chr4	129812074	129812274	+	919.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-8305.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	4.18457889008812	5.20910897799865	4.08288681556656	3.27940412824233	4.5959984489983	4.62797134055207	4.06480669971215	3.85011645514072	-0.184327108900426	0.839091849038642	0.938876956687545
Merged-chr9-107247693-3	chr9	107247594	107247794	+	868.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15785.0	NM_153413	208869.0	Mm.150259	NM_153413	ENSMUSG00000039716	Dock3	MOCA|PBP|mKIAA0299	dedicator of cyto-kinesis 3	protein-coding	4.23052092968181	4.59266416620199	4.63127897178954	4.72359069166791	3.32264655784121	3.40399009757254	3.57080913952847	3.64883539035332	-3.42805192213846	1.16462659951915e-09	7.41475462675973e-08
Merged-chr3-100436859-4	chr3	100436762	100436962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040543, intron 2 of 2)	intron (NR_040543, intron 2 of 2)	10457.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	7.15242237745402	7.33200433743768	6.97434329455793	6.92543983019254	7.81164035711117	7.9198067287987	7.45924793215883	7.41633384056516	0.764013602651216	0.000255160090543576	0.00444276910097877
Merged-chr7-74665073-4	chr7	74664971	74665171	+	878.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110291.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	3.7362441111964	4.09475233756731	3.73669314199504	4.31611098038259	4.31443034562805	4.35741522368236	4.66151655138874	4.61651862862451	1.15163360064611	0.0134121209899013	0.097146775205066
Merged-chr1-16657101-4	chr1	16656997	16657197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037998)	promoter-TSS (NR_037998)	22.0	NM_001310470	67923.0	Mm.289248	NM_026456	ENSMUSG00000079658	Eloc	2610043E24Rik|2610301I15Rik|AA407206|AI987979|AW049146|Tceb1	elongin C	protein-coding	8.19917110423934	8.36292138281735	8.36165304142434	8.53078810992606	8.47175652653945	8.52309330722397	8.47460375737593	8.27249174886688	0.0801531119284188	0.618189010189361	0.835863676650469
Merged-chr6-92101189-4	chr6	92101082	92101282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347342, intron 1 of 14)	intron (NM_001347342, intron 1 of 14)	8749.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	6.57233147612799	6.51958173636891	6.67930303954901	6.12235335031703	6.47865681040002	6.7492612793599	6.37216687561838	6.68893950986353	0.152365760386299	0.525299315543208	0.783229855070132
Merged-chr1-135535488-4	chr1	135535373	135535573	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 2 of 28)	intron (NM_173437, intron 2 of 28)	49882.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	5.2378803518078	5.13244481212297	5.32679520657631	5.11435804011367	5.11498350154402	5.25195030256119	5.38178014738215	4.92764724174334	-0.0373869373172989	0.902096651264867	0.963679833251306
Merged-chr9-123529683-4	chr9	123529576	123529776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030692)	promoter-TSS (NM_030692)	-77.0	NM_001357485	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	8.79597415133927	9.03031900368021	8.82187615020388	8.9365902461834	9.04699247124735	9.06299523850018	9.09815699216528	8.83640956155716	0.140966537789919	0.344907112850496	0.653294217131522
Merged-chr9-108342524-4	chr9	108342418	108342618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3438.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	8.09071416243219	8.1184244246128	7.99209509403246	7.91027908532834	8.07310026615039	8.26324281465932	8.04070387316983	8.39180015855743	0.21884061279333	0.194157554846802	0.494598818505403
Merged-chr13-108268416-4	chr13	108268315	108268515	+	886.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029001, intron 3 of 7)	intron (NM_029001, intron 3 of 7)	-47922.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	3.92437400043761	4.20824599280579	4.08540067518954	4.10114254524833	4.58724418191426	4.35514268274758	4.20972757251919	4.35425019481833	0.746738594660535	0.0603261169415835	0.259437658013714
Merged-chr2-117344116-4	chr2	117344021	117344221	+	937.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1244.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	4.54352153943725	4.23727944551301	4.54425317905431	4.45763697527513	4.44524683502633	4.25711421809785	4.56142043205393	4.7237064961813	0.133444552031571	0.72286853164301	0.88928524667289
Merged-chr15-63123268-3	chr15	63123174	63123374	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	356334.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	3.34150767305859	2.998673185726	3.21825729916491	3.29997061324633	3.47745112107423	3.51596153825132	3.32927893209728	3.86472972600914	1.14510167007917	0.0365732572410285	0.190337638163279
Merged-chr15-57975645-1	chr15	57975545	57975745	+	828.333313	f0_balb.idr	Intergenic	Intergenic	-10258.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	4.37445445429807	4.2951678188181	4.05356061251882	4.1621337277494	4.32903978325362	4.12397884649266	4.39459158686502	4.33110765106474	0.193041779092366	0.621995838015925	0.838139480039671
Merged-chr2-167769944-4	chr2	167769844	167770044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78767.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	6.14927142040875	6.34878879120557	6.55032773208017	6.21665051132132	6.31037186456344	6.05583564267944	6.15901374392128	6.06132771761879	-0.241401999951306	0.30672394260857	0.619092570117727
Merged-chr2-26902954-4	chr2	26902834	26903034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009298)	promoter-TSS (NM_009298)	-47.0	NM_009298	20935.0	Mm.245577	NM_009298	ENSMUSG00000036160	Surf6	D2Wsu129e|Surf-6	surfeit gene 6	protein-coding	7.21590255677247	7.24770141116422	6.76946319986017	6.79041160022025	7.17967643717821	7.45648322575244	6.98401339041101	7.22280271064544	0.274324652494675	0.212487683963491	0.517436225002987
Merged-chr2-113656102-4	chr2	113655974	113656174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 13 of 16)	intron (NM_001285459, intron 13 of 16)	-29016.0	NM_001287818	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	6.15989215024026	6.09232281641966	6.37938988729144	6.4081131850488	5.99933174528597	6.07422333028515	6.29582158531666	5.79056243400193	-0.343678667240562	0.163759987459258	0.453530988494127
Merged-chr3-87337271-4	chr3	87337187	87337387	+	953.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-20594.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	4.403052588328	4.56811173062722	4.69275727163661	4.76174160212596	5.38730766193023	5.20867343216641	5.35446678292804	5.35273989477222	1.35191210157405	3.32996982836092e-05	0.000794049991333005
Merged-chr13-43774367-4	chr13	43774269	43774469	+	873.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10743.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	4.20064912009516	3.53640738110344	4.20131717026336	3.55229615166585	4.5470490103982	4.02640181536978	4.38617706615497	4.44214652541916	1.18358582818359	0.0142185006585709	0.10103410785429
Merged-chr6-88522845-3	chr6	88522741	88522941	+	723.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-4041.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	3.16629505221162	3.3455750373314	3.2262188294181	3.14753254698261	3.16188247281167	3.33830082370247	3.02953511296503	3.38788589708914	0.0506686509318199	0.926486255120413	0.973019035827605
Merged-chr8-66494595-4	chr8	66494507	66494707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8077.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	6.38876966067988	7.18309421773597	6.99575507806752	5.97638543545299	7.38567707197831	7.39747632080084	7.02020098529399	6.819269628815	0.639765796136812	0.0346902232891124	0.184382082141217
Merged-chr5-142920933-4	chr5	142920844	142921044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14190.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	7.70764966414122	7.76181145125041	7.63219204203907	7.56475450423783	7.87924214473044	7.92707753176097	8.04616759137662	7.93686249837318	0.369048499142497	0.0236169870353585	0.142787184251234
Merged-chr5-118478377-4	chr5	118478287	118478487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82332.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	6.84030094332365	6.91057628180646	6.73320252056207	6.45328113860918	6.46232761643933	6.39446833753733	6.46754326829495	6.54615346720136	-0.38245197473929	0.0854461232240144	0.31826109916076
Merged-chr19-47068486-4	chr19	47068371	47068571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177342, intron 1 of 10)	CpG	723.0	NM_177342	226182.0	Mm.301522	NM_177342	ENSMUSG00000025049	Taf5	6330528C20Rik|AV117817	TATA-box binding protein associated factor 5	protein-coding	7.02474226817428	6.81226808761227	6.34557481279016	6.64969957310233	6.79250556471601	6.67077151176287	6.69707313878015	6.48886062323505	-0.0817957368249648	0.722315975613718	0.889145957666795
Merged-chr9-56207317-4	chr9	56207225	56207425	+	906.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172924, exon 7 of 7)	exon (NM_172924, exon 7 of 7)	-46255.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	3.99025458555438	4.31822513233173	4.28085280963617	4.38879762651204	4.29865103652155	4.21912666594528	4.34456363896556	4.09248050847353	-0.0487095383327838	0.903552196603081	0.964287824952031
Merged-chr1-16161627-4	chr1	16161521	16161721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	55739.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	6.71379973854512	6.88797565869995	6.77207556411854	6.66099781123402	6.71478906676079	6.63377110591184	6.63639767111944	6.41554232948296	-0.210277797446143	0.309969007734378	0.622114309925992
Merged-chr12-56241989-2	chr12	56241889	56242089	+	806.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11254.0	NR_045048	100503961.0	Mm.136732	NR_045048	ENSMUSG00000112164	Gm19990	-	predicted gene, 19990	ncRNA	3.60680407547859	3.51908473533687	3.4956108947015	3.38342048113441	3.67066979485487	3.42276020811815	4.03368677849706	3.60526529285996	0.653989453256358	0.189239811795671	0.488105240889121
Merged-chr1-131287056-4	chr1	131286963	131287163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081011, exon 23 of 23)	3' UTR (NM_001081011, exon 23 of 23)	-7500.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	5.82840092612258	6.82614625771408	5.99502221694404	5.66360285115886	5.61288275826663	6.23617846784852	6.16742210874478	6.01268676784852	-0.215703639885121	0.525365274728418	0.783252235625498
Merged-chr17-44432986-4	chr17	44432857	44433057	+	905.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	244385.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	4.91541486618359	4.46204861445428	4.91624409687068	4.74793620956106	4.95838117698428	4.83515611571533	4.55694200252342	4.57474888531645	-0.0338251174260593	0.925102472480188	0.972383544828071
Merged-chr9-40583738-4	chr9	40583635	40583835	+	950.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52352.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	4.44183527491396	4.71084297587896	3.82276554989519	4.17906808396473	4.41031227110711	4.80258321838698	4.50087134509691	4.06009276155026	0.321504156890051	0.485513161655031	0.759349088660037
Merged-chr3-95674381-4	chr3	95674290	95674490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13527.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	7.1762655811774	7.04168700863714	7.07312361667604	6.97849531216503	7.05424437783975	7.12324678412576	7.47095223489741	7.06814665753158	0.170645571007875	0.38765027138602	0.688489915228238
Merged-chr3-81101579-4	chr3	81101492	81101692	+	916.0125119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	B1F|SINE|Alu	65176.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	3.55800364830449	3.16177306930928	3.50209520707886	3.96436211032402	3.90398307112807	3.55790166624122	3.64921432377593	3.50027717497888	0.226027370700686	0.691003915011366	0.874245896263794
Merged-chr11-87461938-4	chr11	87461836	87462036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	CpG	34345.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	6.54518113263955	6.3474005317323	6.33068189546865	6.18047428844343	6.15778729645599	6.08342665534984	6.38521213480536	6.41347734282047	-0.120966336878491	0.603987702205675	0.828350269166784
Merged-chr15-103239959-4	chr15	103239880	103240080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002885)	promoter-TSS (NR_002885)	-128.0	NM_001076789	12419.0	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	7.48188128280276	7.78451825367303	7.16893433664542	7.35717986881656	7.81372790874573	8.06608804421394	7.58187706619349	7.65630402540615	0.426723189883155	0.0410419543990913	0.204904627353084
Merged-chr11-101265427-1	chr11	101265327	101265527	+	566.0	f0_balb.idr	exon (NM_175638, exon 6 of 19)	exon (NM_175638, exon 6 of 19)	4860.0	NM_175638	69847.0	Mm.23656	NM_175638	ENSMUSG00000035112	Wnk4	2010002J11Rik|Pha2b|Prkwnk4	WNK lysine deficient protein kinase 4	protein-coding	3.1414631784579	2.97871189567511	2.82956309936149	3.02567151689325	2.89425679815841	3.30673741713996	3.07336689252388	3.08332863887696	0.380825028161924	0.519310572255413	0.779995932107366
Merged-chr14-56034608-4	chr14	56034508	56034708	+	939.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4113.0	NM_010782	17232.0	Mm.436621	NM_010782	ENSMUSG00000071361	Mcpt9	MMCP-1|MMCP-9|MMCP9	mast cell protease 9	protein-coding	4.52528252451464	4.59648145768599	4.48487772526128	4.51925666323738	4.35481242360021	4.61537290725022	4.61994949206416	4.35032981242128	-0.106638174179889	0.768464470105674	0.909356419531329
Merged-chr6-124359525-1	chr6	124359425	124359625	+	606.0	f0_balb.idr	Intergenic	L1M4|LINE|L1	-2439.0	NM_001177502	76921.0	Mm.425335	NM_001177502	ENSMUSG00000079346	1700013D24Rik	-	RIKEN cDNA 1700013D24 gene	protein-coding	3.63858123152124	3.51740665982541	3.1812575641693	3.36419233785379	3.20730633677933	3.09333883807079	2.97539216371367	2.98263961325017	-1.39557366395176	0.0193833148813893	0.125300605752648
Merged-chr6-35028483-4	chr6	35028378	35028578	+	849.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164413, intron 10 of 11)	intron (NM_001164413, intron 10 of 11)	-50479.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	3.8369281568781	4.06914192291214	4.28830350626123	4.11053956383984	4.08189545462391	4.37249604541688	4.26870747397634	4.44410761652333	0.511397718761999	0.215234658085904	0.521307599288709
Merged-chr9-63737616-4	chr9	63737526	63737726	+	834.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	20368.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	3.7728372988603	3.87277366969032	3.96121393908488	3.8344907721852	3.72204815099104	3.40291506635156	3.65374300365154	3.82075747486848	-0.593473395428977	0.210500974577026	0.514976722960957
Merged-chr14-21848989-4	chr14	21848889	21849089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026965)	promoter-TSS (NM_026965)	-79.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	7.17548249472682	7.39720774301945	7.05618549103438	7.44926945089336	7.34464302343498	7.37653749483176	7.30174361110155	7.17170012754685	0.0132562507678698	0.944869801138911	0.980163337636506
Merged-chr2-145740224-4	chr2	145740119	145740319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	39024.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	5.87062236367595	5.83344359439226	6.04550940696364	6.06927056373929	5.71217775567658	5.73476553762562	6.23572082951364	5.69302249864701	-0.164057765460977	0.538739094253138	0.791751031472413
Merged-chr11-116096583-4	chr11	116096462	116096662	+	896.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-9567.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	4.7944851189474	4.29081098289051	4.52138372848018	4.57545252420688	4.81615477990191	4.51539781686623	4.41151283606695	5.25634416052092	0.506069558573032	0.205676488510564	0.509406965297798
Merged-chr4-36094327-3	chr4	36094224	36094424	+	983.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165999, intron 5 of 7)	intron (NM_001165999, intron 5 of 7)	-249120.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	4.21865023461168	3.64138058850039	4.29993382996098	4.62025857409174	3.58530172655074	4.11752999541913	3.57741376623277	3.98978883399711	-1.10254759864088	0.0361119946156797	0.188888055552544
Merged-chr9-7914658-1	chr9	7914558	7914758	+	757.0	f0_balb.idr	Intergenic	Intergenic	-41488.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	3.41021262263357	3.52349991214029	3.7170800994177	3.69983782838995	3.36385975278936	3.40231665570125	3.14799288500974	3.51924293011001	-0.799897539537844	0.129069059765839	0.39973336201543
Merged-chr1-171554116-1	chr1	171554016	171554216	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-5077.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	4.51511177751943	4.62333326939052	4.54924581187034	4.47319999297117	3.34759479504103	3.54060097467174	3.40515816627381	3.41452259814041	-3.74312631570508	3.35768575724809e-10	2.37099915193613e-08
Merged-chr17-56849013-4	chr17	56848952	56849152	+	919.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039114, intron 10 of 14)	B1_Mus1|SINE|Alu	-18044.0	NM_027787	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	4.16514552188054	4.25189389877414	3.85793293937664	3.63285958113874	4.23580181174437	4.24566685629607	4.42956670389506	4.20804223253346	0.755574904448099	0.0858735652028775	0.319251772474855
Merged-chr4-16089117-3	chr4	16089003	16089203	+	912.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74540.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	3.80366120808898	3.41462154287733	3.59099670177051	3.85438613966499	3.85630380572082	3.30388679485835	3.92575513147759	4.06636030251042	0.398163323006651	0.455116697260452	0.738746012503745
Merged-chr9-78176645-4	chr9	78176544	78176744	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040401, exon 2 of 4)	non-coding (NR_040401, exon 2 of 4)	730.0	NR_040401	320295.0	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	4.7689116039038	4.74712155740009	4.7696731700576	4.98749562343075	5.54128643684095	5.40660894509034	5.44983289649295	5.23007727619162	1.07578072438397	0.000531290742841584	0.00810648312641395
Merged-chr10-25116221-3	chr10	25116112	25116312	+	929.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83958.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	3.73399941873878	3.68642980444642	4.17701914862691	4.13276770897579	3.78668305510683	3.61996777897682	3.55235796608664	3.50186658859114	-0.985515181197173	0.0485066424380489	0.227327007253554
Merged-chr6-120481766-2	chr6	120481666	120481866	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008359, exon 13 of 13)	exon (NM_008359, exon 13 of 13)	12041.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	3.30972287214658	3.62108806502169	3.25034477269425	3.13680929806579	3.30226423330014	3.53751499851444	3.35415043525587	3.18621355611101	0.0411386818759825	0.940209835793468	0.978487036039704
Merged-chr10-117952292-4	chr10	117952192	117952392	+	965.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26833.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	5.0248396066262	5.35519897846086	4.71283340132473	4.78026122413635	5.4135129112727	5.2670631888041	5.1627975427025	4.95091493875826	0.431281251660259	0.205131121877719	0.508754053818447
Merged-chr1-172203759-3	chr1	172203650	172203850	+	665.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329871, intron 1 of 3)	intron (NM_001329871, intron 1 of 3)	3054.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	3.43595103693722	3.31913402919215	3.59889254867744	3.86710852437962	3.3222396857118	3.29417780380833	3.63320677774342	3.59680652996091	-0.381978424254973	0.481307016773146	0.756510503784291
Merged-chr9-99139672-4	chr9	99139554	99139754	+	956.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 1 of 23)	CpG	557.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	4.33658175040874	4.44848703133083	3.9112537161821	3.99705461825448	4.65868415948501	4.75636189629788	4.36209918779114	4.78953405468851	1.0761534813202	0.00726647634019593	0.0625551256492596
Merged-chr7-88430329-4	chr7	88430246	88430446	+	908.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028238)	promoter-TSS (NM_028238)	73.0	NM_028238	72433.0	Mm.276669	NM_028238	ENSMUSG00000030559	Rab38	2310011F14Rik|AU043391|cht	RAB38, member RAS oncogene family	protein-coding	4.72126565366953	4.31354207717958	4.68921809779291	4.35576250884013	4.24510708513877	3.93904726763367	4.08996518134433	4.42814693278602	-0.794039716604372	0.0572585910949673	0.250822158628142
Merged-chr3-95016263-4	chr3	95016117	95016317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030074)	promoter-TSS (NM_030074)	-760.0	NM_001357863	78266.0	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding	7.00972677567777	7.10189872698857	7.23564616536111	7.01094760331672	7.30054960867615	7.6117956673896	7.39844837005319	7.04424698463225	0.357514965399396	0.0742488026634027	0.293576020707607
Merged-chr6-136683850-4	chr6	136683745	136683945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER74C|LTR|ERVL	-21952.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	7.16723823858019	6.80229928241827	7.08993053108868	7.38214202163479	6.61099974097669	6.67284996224975	7.17506969530909	6.89800035623273	-0.389120941729904	0.0946067715496515	0.336545254997827
Merged-chr1-119913201-4	chr1	119913120	119913320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175106)	promoter-TSS (NM_175106)	-52.0	NM_175106	66343.0	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	7.5180954765421	7.65660770284284	7.61904495207393	7.92161688765246	7.72250974145419	7.66763438649292	7.73724656128667	7.89422114891071	0.0752415305894305	0.677676122582102	0.86777801477479
Merged-chr11-121736334-3	chr11	121736235	121736435	+	766.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33908.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	3.80290096721766	4.38532842277358	4.00919126810065	3.52870855133274	4.11427318776761	4.13384007522013	3.73218034569603	3.95832836825966	0.0784150620511029	0.874724579464228	0.952925927223413
Merged-chr3-88422550-4	chr3	88422446	88422646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281795, intron 1 of 3)	intron (NM_001281795, intron 1 of 3)	2595.0	NM_178696	229517.0	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding	6.26250111849872	6.64428967464175	6.11652266210984	5.88708504266004	6.87806906474361	6.82880814029603	6.78210148044419	6.13419844504188	0.645702947241883	0.0204984216189765	0.130168360461872
Merged-chr4-95216179-4	chr4	95216097	95216297	+	919.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4_19-int|LTR|ERVK	-163975.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	4.61945429007022	4.47311142568036	4.43677119872937	4.30438622456084	4.23850931068376	4.25079448153647	4.10757841682851	3.90433648918543	-0.78145179922471	0.0545420739032953	0.243859942108207
Merged-chr4-145774488-4	chr4	145774384	145774584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7059.0	NM_001083918	666532.0	Mm.392861	NM_001083918	ENSMUSG00000067916	Zfp991	Gm13139	zinc finger protein 991	protein-coding	5.22999241875943	5.17677051434567	5.59569031340625	3.25303486575158	5.62925728228193	5.64450556851724	5.74665905047933	5.59156759994858	0.915561442118426	0.284233233089762	0.596212390359036
Merged-chr2-12350579-3	chr2	12350493	12350693	+	896.361145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149732, intron 14 of 15)	intron (NR_149732, intron 14 of 15)	-48649.0	NM_001001309	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	4.48081509754258	4.04581302642029	4.9991359801308	4.91691772659099	4.12442560004851	4.13001204551101	4.14761518148204	4.0568944408265	-1.31555405619442	0.00333648714610057	0.0347001488270445
Merged-chr15-96666063-4	chr15	96665984	96666184	+	896.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23171.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	3.90498415240862	4.17217205937467	4.12474752242992	4.12231513939989	4.60951947131504	4.3013710941022	4.63267124508337	4.47388976388034	1.01663694362976	0.00896372808412963	0.072946825643062
Merged-chr3-103790230-3	chr3	103790102	103790302	+	897.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301304, intron 1 of 15)	intron (NM_001301304, intron 1 of 15)	1073.0	NM_001301306	15257.0	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	4.0543184931576	3.59582844109247	3.78444115245117	3.78862633279857	3.55759096102986	3.79694266770059	3.66471643505606	3.92549424056428	-0.22450716358763	0.636594737256896	0.846323810295267
Merged-chr11-70803883-4	chr11	70803786	70803986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 1 of 4)	intron (NM_001045526, intron 1 of 4)	8675.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	6.38905363018807	6.62629667966344	6.35500281231881	6.54266455056716	6.37959268000235	5.98593995409491	6.13114421721738	6.178823603949	-0.449957565670482	0.051472384253604	0.235686898603234
Merged-chr17-79971456-4	chr17	79971358	79971558	+	787.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3E|LINE|L1	-75335.0	NM_001286647	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	3.5502424314516	3.55116426074553	4.10026674686636	3.77596337797055	3.78154808585735	3.97807450544791	4.58661002020391	4.30439581663367	1.15143259256899	0.0215173104592849	0.134349566071553
Merged-chr15-9774925-4	chr15	9774838	9775038	+	899.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44-int|LTR|ERVK	-26070.0	NM_001305044	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	4.26442260705401	4.51191080435503	4.16953170113607	4.26972304104289	4.50383529751314	4.5251634135902	4.29157299417148	4.3517427443296	0.270250135648429	0.477449295931166	0.753617106887338
Merged-chr2-131159622-3	chr2	131159528	131159728	+	888.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154887, intron 1 of 6)	intron (NR_154887, intron 1 of 6)	453.0	NR_154887	67326.0	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	4.33204137245346	3.98919763916728	4.0589166663018	4.11655620613866	4.33149705756286	4.02067766090388	3.937425092865	4.71503446050534	0.401852612809201	0.364046106816805	0.668959979169087
Merged-chr5-140806492-3	chr5	140806385	140806585	+	949.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	23946.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	4.31274317832905	3.89896561920429	3.85833770305313	4.26773251797233	4.06973120062866	4.08553334173655	3.94688478529403	3.8562330685794	-0.30322978313195	0.492336996694268	0.763405929571789
Merged-chr6-95718691-6	chr6	95718427	95718627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011507, intron 1 of 10)	CpG	319.0	NM_011507	20917.0	Mm.371585	NM_011507	ENSMUSG00000061838	Suclg2	AF171077|AW556404|D6Wsu120e|G-SCS|GTPSCS|SCS-betaG	succinate-Coenzyme A ligase, GDP-forming, beta subunit	protein-coding	5.87837285595979	5.33961697456371	5.89992488264654	5.54236601074282	5.41867044844904	5.54526747192134	5.40356553307394	5.76644294549651	-0.233793408206749	0.42550360513001	0.716992238586874
Merged-chr2-26550040-4	chr2	26549934	26550134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31022.0	NM_178444	353156.0	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	6.60270025221624	6.59699549103498	6.31009890295441	6.41834074723396	5.90223420001392	6.22287869738653	6.29591711603391	6.04070154148918	-0.559616530107539	0.0170686558393438	0.114897848873525
Merged-chr4-132795350-1	chr4	132795250	132795450	+	1000.0	f0_c57.idr	intron (NM_001033308, intron 1 of 5)	intron (NM_001033308, intron 1 of 5)	1014.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	4.83187019380832	4.85634959820638	4.36245151597852	4.69595929345852	4.84759008333196	4.68657719843567	4.97551479077937	4.99672703390953	0.369904778513767	0.285749514720699	0.597460996630869
Merged-chr18-36242298-4	chr18	36242180	36242380	+	799.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38882.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	3.7462293713729	3.74085953256747	3.98691978487177	3.72071971431109	3.91977179739279	3.56762844133586	3.62293143835554	4.02732217037935	0.0211275147902629	0.964284943676975	0.987309283922085
Merged-chr10-39451290-4	chr10	39451191	39451391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	81492.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	7.67767471084252	7.55526345294316	7.95139080497558	8.44780286171979	7.74519089254687	7.31687463803578	7.70711135227456	7.8975360088344	-0.365385842715762	0.131428621068499	0.403648507897595
Merged-chr5-115347764-4	chr5	115347662	115347862	+	983.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007748, intron 2 of 2)	intron (NM_007748, intron 2 of 2)	1193.0	NM_007748	12861.0	Mm.43415	NM_007748	ENSMUSG00000041697	Cox6a1	VIaL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding	4.69580541637398	5.49701912249362	5.15364133087153	4.90769879996093	5.29980519293724	5.12220810285322	5.02903148548759	5.40981418897223	0.244108753966094	0.477227192338617	0.753399593177778
Merged-chr3-30860252-2	chr3	30860152	30860352	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286994, intron 1 of 3)	L1_Mus2|LINE|L1	4302.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	3.26650085868976	3.68707398444341	3.3804682959753	2.83153270034298	3.38069370523905	3.11763920776348	3.19467185406282	3.37851642425294	-0.190138355164902	0.758294877703047	0.905063463252088
Merged-chr1-35869730-4	chr1	35869628	35869828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-198672.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	5.52710520265108	6.1667191829461	6.30054678407696	6.05005827956423	6.04328786243699	5.79773003061388	6.198723115932	5.77812021280481	-0.115297631523903	0.680003856538382	0.868593041138696
Merged-chr8-90954953-4	chr8	90954878	90955078	+	855.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 3 of 39)	intron (NM_177224, intron 3 of 39)	22729.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	4.18485475166205	4.61598196077925	4.2822596293521	4.4553281937865	4.22043166861997	4.54490378663304	4.69036649739404	4.13189292747196	0.0240958236024305	0.952790301453702	0.983276598943455
Merged-chr9-111563491-4	chr9	111563426	111563626	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016853, intron 10 of 10)	intron (NM_016853, intron 10 of 10)	124445.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	5.19037623956636	5.00265494231268	5.19127644235431	4.84949703029964	4.85857124917677	5.00528701524746	4.64776863765436	4.57740506902573	-0.539039292420927	0.114928076051979	0.375164665228334
Merged-chr4-149303391-4	chr4	149303304	149303504	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008441, intron 1 of 20)	intron (NM_008441, intron 1 of 20)	4294.0	NM_207682	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	4.7367244686018	4.70524138076746	4.77705254118683	5.06418147995641	4.86302935544075	5.19481444721587	4.82965931185682	4.92082708096708	0.212798778064641	0.531197385168808	0.787095803840917
Merged-chr2-180725250-4	chr2	180725158	180725358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183161)	promoter-TSS (NM_183161)	-81.0	NM_183161	228993.0	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	6.60845026530149	6.44549131972724	6.41496019968397	6.85337412484771	6.28312671869698	6.38300483164476	6.38214010014035	6.20104066982324	-0.437007566366908	0.0568299599015945	0.24972253789238
Merged-chr14-8224082-4	chr14	8223993	8224193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027782)	TTS (NM_027782)	7845.0	NM_001305937	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	6.28956601632751	6.60382767443659	6.74604242482113	7.2038558647687	6.87460686737221	6.54746246458415	6.23815840453001	6.6226498109437	-0.247331559564209	0.368731777767684	0.67318044551467
Merged-chr3-105899953-4	chr3	105899847	105900047	+	937.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-4474.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	4.73544692626784	4.75857343450811	4.65552387791763	4.71538657316811	4.86169032555841	4.83126031415628	4.71406040997946	5.21421673541226	0.41029094130194	0.221987201160886	0.530047563717821
Merged-chr6-38982856-4	chr6	38982755	38982955	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 4 of 12)	ORR1D2|LTR|ERVL-MaLR	63869.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	4.87863357744008	4.20550950310432	4.42930619489496	4.40869783526005	4.59346526117664	4.56035497091472	4.61468184843043	4.81146287695681	0.336225656194066	0.376239150303783	0.679069384462916
Merged-chr6-122607999-3	chr6	122607917	122608117	+	712.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008108, intron 1 of 1)	intron (NM_008108, intron 1 of 1)	2070.0	NM_008108	14562.0	Mm.299742	NM_008108	ENSMUSG00000030117	Gdf3	C78318|Gdf-3|Vgr-2|Vgr2|ecat9	growth differentiation factor 3	protein-coding	3.64962967025967	3.58250412450812	3.12086170834493	3.08042938096253	3.30260752088223	3.55810967793511	3.36937029269841	3.82763086620215	0.495547719732424	0.387438370511367	0.688285485118024
Merged-chr14-20885700-4	chr14	20885603	20885803	+	960.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43695.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	4.32716274289007	4.79618479652799	4.79808481867795	4.94943634759964	4.92939939957986	4.34997023584707	4.70212702939102	4.89783345836457	-0.00539755405569136	0.988812472984359	0.995497701794227
Merged-chr15-77799647-4	chr15	77799555	77799755	+	773.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	42520.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	4.02587106565606	3.46308349218487	3.40128658476028	3.5989626199368	3.90047147828364	3.76327255590474	3.73566382778631	3.8939844616867	0.552575460844831	0.260532655564103	0.572324359311071
Merged-chr3-87263630-3	chr3	87263538	87263738	+	893.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030707)	promoter-TSS (NM_030707)	-114.0	NM_030707	80891.0	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	3.57810728558782	3.78784125904706	3.57858754553336	4.08129369897587	3.29257057476896	3.63822870422282	3.66951538008465	3.39950120454199	-0.903798815345778	0.0862376959401984	0.320154016550742
Merged-chr10-127596171-4	chr10	127596084	127596284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	24964.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	6.23122208759272	6.22055723401564	7.02979091839664	6.71737006809319	6.64224119881567	6.54896290852179	6.65200505321057	6.66663606323502	0.0432353973340004	0.865580755116593	0.949719799738627
Merged-chr4-139233142-4	chr4	139233067	139233267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	39056.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	7.46420048035961	7.60876864276924	7.7703118142234	7.55666664145721	7.41546919989029	7.56371036608444	7.66317278146707	7.30761912403195	-0.146332710429579	0.421742112706017	0.714158079771268
Merged-chr12-8313405-4	chr12	8313294	8313494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021429)	promoter-TSS (NM_021429)	-39.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	6.54085469181411	6.93746022284211	6.67233186506957	6.62566932264397	6.83817513987265	7.03503291285972	6.95045192576652	6.66758023341703	0.248199098378298	0.241165638458089	0.551746238744161
Merged-chr13-20049826-4	chr13	20049733	20049933	+	736.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-40674.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.74122778689485	3.74520469597744	3.74172774474519	3.88734266393192	4.09294117451305	3.91460409714186	3.87974100231034	3.89386185081915	0.464130836148696	0.290780218792112	0.603072412395213
Merged-chr6-108756125-4	chr6	108756014	108756214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-26945.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	6.61927605222698	6.49532784898588	6.24082421458361	6.56993552659611	6.21778216057037	5.62266574779921	6.35350666810369	5.98113910328816	-0.620107135142439	0.0166711017858349	0.113057833493284
Merged-chr9-121477462-4	chr9	121477296	121477496	+	636.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18298.0	NM_001284508	12424.0	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	2.99325180502065	3.16830160405864	3.23690395403332	3.04370715975976	3.08660799226137	3.2310331074735	3.16818498281991	3.39044286679116	0.43091011004391	0.436269272997096	0.72505818409614
Merged-chr17-48275639-4	chr17	48275510	48275710	+	956.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172623)	TTS (NM_172623)	11315.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	4.61848326037528	4.55565876322818	5.35472334844897	5.1810043391242	5.35931647278797	5.18001952298405	5.55573938293463	5.64848183970818	0.849523107323143	0.0187590257005407	0.122646155078423
Merged-chr4-95230646-4	chr4	95230559	95230759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-178437.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	6.68067072241551	6.46681709053765	7.11436878464349	6.9497796563154	6.93100623628529	6.72814128525335	6.98695584017861	7.06426350658427	0.146652206043039	0.516176458223653	0.778006346996534
Merged-chr10-20673908-4	chr10	20673820	20674020	+	909.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	51158.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	4.8547765535101	4.36109175087763	5.09770163188192	5.23152804086711	4.43776119873589	4.35088996142511	4.40247813966167	4.32250420431	-1.20947695754018	0.0026437347066692	0.0289638899008784
Merged-chr4-134703849-4	chr4	134703759	134703959	+	944.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_207237, exon 1 of 12)	5' UTR (NM_207237, exon 1 of 12)	431.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	4.82522201562461	5.03687598261674	5.09186447444869	4.51639489199724	4.68844242575626	4.99968963261697	4.60537186915547	4.92902295183966	-0.12625449688955	0.727935433671127	0.891750552533363
Merged-chr10-24622757-4	chr10	24622656	24622856	+	949.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	27314.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	4.54821217964857	4.66763341963421	4.74766828548695	4.92924198533856	4.94645943899275	4.636758161206	4.76111677314786	4.3116890788783	-0.0991489427222221	0.79102259044099	0.918930451102165
Merged-chr10-45486288-3	chr10	45486225	45486425	+	912.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16124.0	NM_001031772	380669.0	Mm.440328	NM_001031772	ENSMUSG00000063804	Lin28b	2810403D23Rik|D030047M17Rik|Lin-28.2	lin-28 homolog B (C. elegans)	protein-coding	3.44632502622888	3.68234397849935	3.38649338445285	3.29417713277104	3.36197755147584	3.43906294213386	3.54511722278097	4.04477816032005	0.537769527895568	0.316016733278462	0.627843667011686
Merged-chr11-53893213-3	chr11	53893123	53893323	+	949.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1520.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	4.18540457226888	3.80295679720817	4.0984080454533	4.21243909342641	3.70635428351724	4.0774266712372	3.88691098664524	4.22496663778451	-0.289272688925612	0.52209618804093	0.781833715877511
Merged-chr1-36710098-4	chr1	36710014	36710214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146107)	promoter-TSS (NM_146107)	-189.0	NM_146107	226977.0	Mm.28521	NM_146107	ENSMUSG00000037351	Actr1b	2310066K23Rik|AA960180|AI851923|Arp1b	ARP1 actin-related protein 1B, centractin beta	protein-coding	7.84803633924888	8.05259537393396	7.36080200370338	7.85495297637522	7.89095243563573	7.70126938081136	7.80401173471978	7.68763663080124	-0.0407601956168859	0.836244090084272	0.93770267971445
Merged-chr17-63499117-3	chr17	63498975	63499175	+	898.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_015794, exon 1 of 9)	exon (NM_015794, exon 1 of 9)	1505.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	3.64348465666777	3.67128741501033	4.30237160388494	3.81253768170046	3.91289187605099	3.63556820028863	3.74596101059573	4.43781050233624	0.243300277604693	0.639657651232687	0.847634612685043
Merged-chr2-144010524-4	chr2	144010490	144010690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	CpG	673.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	6.96232888186031	7.48292636263976	7.29733313024319	7.36652984614401	7.72814652364964	7.81466451810231	7.69540410359386	7.53790290121907	0.529530837068189	0.00565395491269384	0.0520422677784346
Merged-chr5-148493199-4	chr5	148493071	148493271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58502.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	6.30047145463814	6.3925333398625	6.52996419299643	6.13790899295515	5.98573261054858	5.92884076113977	5.94608107820948	6.16513696612739	-0.50179014226663	0.0361982788206586	0.18911900236169
Merged-chr3-96595435-4	chr3	96595334	96595534	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1202.0	NM_001024851	545554.0	Mm.267664	NM_001024851	ENSMUSG00000049097	Ankrd34a	AW060394|Ankrd34	ankyrin repeat domain 34A	protein-coding	6.00113829032967	6.12268041930087	6.10022534881258	5.94208143129805	5.4112864018829	5.85481712534747	5.5684382305639	5.31170160267907	-0.815259025480157	0.00232031079281231	0.0262164219035456
Merged-chr7-43920763-4	chr7	43920660	43920860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13011.0	NM_174865	317652.0	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	6.66322052731281	6.8911267166297	7.25622825697607	6.74154936990572	6.88514998809015	6.85621684802102	7.28787544552992	7.0797403248226	0.189534821402044	0.403170085035862	0.700650887226461
Merged-chr7-28675230-4	chr7	28675100	28675300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17649.0	NM_207238	233040.0	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	5.20125011189326	5.02324766489554	5.03145860686699	5.06065453363149	5.45750318442839	5.57984507819362	5.29735502540204	5.26084953947948	0.599444800002554	0.0388011251350446	0.197866835219038
Merged-chr9-124053721-4	chr9	124053630	124053830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31759.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	6.0372434070575	5.77170394796998	6.52665001857047	6.45674207414059	5.78403733442145	5.70095948033137	6.08945927996764	5.968361134047	-0.54363289569172	0.0543105375731965	0.243350326270827
Merged-chr5-92083837-4	chr5	92083734	92083934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080795)	promoter-TSS (NM_001080795)	-90.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	8.91678085812333	9.0218090269014	8.85674555138994	9.01512256844904	8.87413149916947	9.14402952567621	9.03608688285253	8.72287930927114	-0.00545804932454004	0.972291874653553	0.990039960315941
Merged-chr3-93520325-1	chr3	93520225	93520425	+	808.333313	f0_balb.idr	promoter-TSS (NM_016740)	promoter-TSS (NM_016740)	-171.0	NM_016740	20195.0	Mm.280038	NM_016740	ENSMUSG00000027907	S100a11	EMAPI|Emap1|S100a14|S100c|cal	S100 calcium binding protein A11	protein-coding	3.54474017781044	3.53748189605318	3.69073911988966	3.78147323535294	3.04490804390791	3.37204969808716	3.1153278706454	3.37919631038898	-1.53262138349026	0.00586413445748772	0.0533763716815241
Merged-chr10-130542279-4	chr10	130542145	130542345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44866.0	NM_001103366	625131.0	Mm.469844	NM_001103366	ENSMUSG00000091511	Vmn2r87	EG625131	vomeronasal 2, receptor 87	protein-coding	6.93014383944852	7.04992090316341	7.4818004746997	6.56252876897155	7.14793482822543	7.18747579164518	7.22655799311897	7.37675989352275	0.274746838922232	0.251589278235176	0.562892525080843
Merged-chr19-5847585-3	chr19	5847497	5847697	+	973.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2117.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	3.44597041191215	3.22034730972524	3.22358904885244	3.29231179190375	3.18143551691521	3.33552978714885	3.21220266552105	3.49446824681493	0.0378532075302457	0.943369733193538	0.979535152499349
Merged-chr9-123965009-2	chr9	123964909	123965109	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009912, intron 1 of 1)	intron (NM_009912, intron 1 of 1)	3683.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	2.9434537130183	3.12862817332332	3.11499943701509	2.86400399686513	2.9859498406173	2.92221033090075	2.87174670952331	2.67289030571387	-0.616362082186706	0.325847114270923	0.637396409823871
Merged-chr4-141651501-4	chr4	141651406	141651606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	12609.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	5.86546955680513	5.27724693151024	5.42233735342253	5.95012043941228	5.34153899008042	5.47581897332971	5.13598399534956	5.65995856325162	-0.443120620566536	0.163325609762227	0.452947618532906
Merged-chr15-59831690-4	chr15	59831580	59831780	+	915.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-36721.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	4.88646245362895	5.1279755407854	4.98989935362749	5.00153584223798	4.96224529892906	4.65120369506746	4.71422134332242	4.73305051475477	-0.450874959065275	0.172031956696015	0.465252629537357
Merged-chr7-127449194-4	chr7	127449117	127449317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175163)	promoter-TSS (NM_175163)	-59.0	NM_175163	71131.0	Mm.474533	NM_175163	ENSMUSG00000048921	Zfp689	4933416E05Rik|Znf689	zinc finger protein 689	protein-coding	5.64850700124268	6.10333663964853	5.64949149156449	5.45324927492861	6.02527446923842	6.17954243974461	5.86762255581086	5.87082511766222	0.425927174175718	0.124270734845797	0.391253832076653
Merged-chr2-77170580-4	chr2	77170494	77170694	+	916.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025576)	promoter-TSS (NM_001025576)	41.0	NM_001025576	545428.0	Mm.26579	NM_001025576	ENSMUSG00000044033	Ccdc141	2610301F02Rik|CAMDI	coiled-coil domain containing 141	protein-coding	4.3087473744072	4.21227544812609	4.55365032084157	4.32613935361012	4.36423712863105	4.39101180290264	4.24524792734923	4.47442886836985	0.0454523059587643	0.904583961988544	0.964559678221358
Merged-chr11-117138449-6	chr11	117138388	117138588	+	864.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	23316.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	4.48577367897641	4.25973656803194	4.26639719029073	4.68052113545344	4.47045017600043	4.34431878959605	4.42524359660418	4.59926131105659	0.025042146474722	0.948304306660388	0.981388084353081
Merged-chr11-95870117-4	chr11	95869977	95870177	+	887.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008081, intron 7 of 10)	B4A|SINE|B4	11260.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	3.64131135212633	4.43005603701653	4.08631752999272	3.82273175032172	4.13954375001107	4.16287502417066	4.11430526380678	4.21791010405756	0.340378001714083	0.457207169442889	0.740383326442394
Merged-chr6-45026495-3	chr6	45026370	45026570	+	761.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33591.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	2.87239608489452	2.94111122631348	2.87272669267116	2.95942538872814	2.69323871707167	3.10529790101989	2.92510433136905	3.05115859484404	0.138903781926091	0.820352842839921	0.931216561407907
Merged-chr7-88226159-6	chr7	88226060	88226260	+	891.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51925.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	3.7265873193239	3.77332946168715	3.83183702589616	3.97333412179172	3.69187790307385	3.84517198841026	4.00042277293719	3.87896114062389	0.0368947727688733	0.934780944674615	0.97635719558922
Merged-chr4-46356937-4	chr4	46356828	46357028	+	726.891663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12734.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	4.3955807098572	4.31956379610052	4.26172954389736	3.85230205639263	4.31977904882102	4.5695257268264	4.80111225101441	4.35019345689547	0.740510299506089	0.0736354930460813	0.29234307181229
Merged-chr4-102753551-4	chr4	102753441	102753641	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6594.0	NM_001285860	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	4.4747576199409	4.47820403817313	4.92258368463162	4.89195562498395	4.85937232926032	4.24707714521129	4.5815956060316	4.67814260785115	-0.205906739468051	0.597632371494542	0.825452605476191
Merged-chr1-20890593-3	chr1	20890497	20890697	+	972.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040492)	promoter-TSS (NR_040492)	49.0	NM_028829	74229.0	Mm.40780	NM_028829	ENSMUSG00000025931	Paqr8	1700019B16Rik|3110001D06Rik	progestin and adipoQ receptor family member VIII	protein-coding	4.33311125490119	4.87120697339342	4.6635213021226	5.03812005398086	4.15976594521872	4.08361032183618	4.05943545710153	4.62356600125982	-1.17398943893798	0.0059569303667533	0.0539755921131391
Merged-chr18-23882317-4	chr18	23882216	23882416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 6 of 7)	intron (NM_001162941, intron 6 of 7)	-72372.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	6.96378275902453	6.61355131092625	7.02408947280288	7.3744373967115	6.48530967511043	6.43119059067471	6.28122643363106	6.53159874485183	-0.853121685607657	0.000388548111474381	0.0062827046857417
Merged-chr15-75086400-4	chr15	75086294	75086494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25543.0	NM_001357693	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	6.95504794716054	6.36218268897051	7.19104164375188	6.27886586318208	6.04430659219324	6.08108537013065	5.97030126417551	7.31498778668409	-0.376121870012659	0.515571410601836	0.777592155234004
Merged-chr5-75874732-3	chr5	75874632	75874832	+	937.4722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103696.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	4.05863361292229	3.5480742436764	4.30436203011867	4.18515750465724	2.91374456257122	3.08760587329841	3.12364277626594	3.3468020452266	-3.82193442392342	2.2134708026742e-07	8.8314259116338e-06
Merged-chr2-124616031-13	chr2	124615707	124615907	+	836.211548	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	5511.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	3.72687827769461	3.7634625745046	3.72739670938068	3.4890208219787	3.92532943755211	3.79178348928632	3.76368174508677	3.92114889950822	0.559262857459734	0.218472595059437	0.525781862908224
Merged-chr11-83067354-4	chr11	83067255	83067455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011408, intron 1 of 1)	RLTR11A|LTR|ERVK	2243.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	4.95537401110047	5.21671304065811	4.67859129948938	4.7478341916168	5.17507126159303	5.16514727214216	5.09794372448677	5.08803529706201	0.43218877903137	0.182327230548239	0.47878218634963
Merged-chr15-66084083-3	chr15	66083980	66084180	+	745.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	-107276.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	3.10897310501555	2.84397684968597	2.93936496851692	3.00937452199885	2.70202019376908	2.84816760150873	3.19565082178996	2.81075808882334	-0.346420206691303	0.584217218862642	0.817552638829506
Merged-chr9-40321654-4	chr9	40321577	40321777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357622)	promoter-TSS (NM_001357622)	-354.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	8.63659863719461	9.0093270848019	9.29105131654395	9.1470952580907	8.8708565468894	8.88418929631501	9.12520194709706	8.62776297124551	-0.193525339649268	0.309119472511978	0.621523912634826
Merged-chr14-77546737-4	chr14	77546636	77546836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253759, intron 7 of 19)	intron (NM_001253759, intron 7 of 19)	-39868.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	5.31598080400453	5.15478025736481	5.1554732112474	5.43065385154787	5.15062165010968	5.39819980800559	5.58428029853885	5.60885042555744	0.281295550052758	0.349371700593266	0.656941686201213
Merged-chr2-153741211-4	chr2	153741119	153741319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007896)	promoter-TSS (NM_007896)	-68.0	NM_007896	13589.0	Mm.143877	NM_007896	ENSMUSG00000027479	Mapre1	5530600P05Rik|AI462499|AI504412|AW260097|BIM1p|D2Ertd459e|Eb1	microtubule-associated protein, RP/EB family, member 1	protein-coding	8.38376562607214	8.39960915145977	7.99904488126445	8.04409575058549	8.31295959350146	8.33579824101939	8.42133297414497	8.2134384045601	0.135757268202838	0.434363020324257	0.723657087905165
Merged-chr18-80313051-4	chr18	80312952	80313152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190373, intron 3 of 3)	intron (NM_001190373, intron 3 of 3)	51202.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	7.24194390858476	7.09125856202532	7.71503848135201	7.41085754088921	7.07834617573412	7.08871270109145	7.20695712857337	7.10112045815655	-0.360420843201212	0.0798649709992069	0.306060157509693
Merged-chr4-53264743-3	chr4	53264631	53264831	+	993.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033139, intron 1 of 1)	intron (NR_033139, intron 1 of 1)	761.0	NR_033140	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	4.72529798310848	4.47786362110778	5.01289808081646	5.30422813940507	3.81498479234423	4.43923235590854	4.13281326868096	4.254033557985	-1.74943512195752	6.76777737218998e-05	0.00146154012613808
Merged-chr2-102189665-1	chr2	102189565	102189765	+	825.333313	f0_balb.idr	Intergenic	Intergenic	-3205.0	NM_001290784	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	3.581644743787	3.84671707249427	3.91631987073014	4.38875839158436	3.48813434786751	3.88041694667407	3.85005359928782	4.17890576772143	-0.303059618479359	0.565939326836198	0.807783748011785
Merged-chr6-47836225-3	chr6	47836130	47836330	+	875.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173034, intron 1 of 4)	CpG	569.0	NM_173034	272347.0	Mm.169059	NM_027477	ENSMUSG00000062519	Zfp398	5730513I23Rik	zinc finger protein 398	protein-coding	4.47759813362866	3.98311053171722	4.67542622906606	4.26659559576077	3.71573629528288	3.7814999701422	4.0902329702318	3.90012492928773	-1.30465696285575	0.00477257395599713	0.0458939532037178
Merged-chr4-88788620-1	chr4	88788520	88788720	+	720.75	f0_c57.idr	promoter-TSS (NM_001161609).4	promoter-TSS (NM_001161609).4	-12.0	NM_001161609	545654.0	Mm.478784	NM_001161609	ENSMUSG00000095101	Gm13285	limitin	predicted gene 13285	protein-coding	2.39890135803255	2.34697196889834	2.39909305863912	2.07160706867498	3.29026345262954	3.09007688720321	3.06895431779915	3.1852206794472	7.09024777673568	3.42311497899068e-12	3.35611434007683e-10
Merged-chr2-130907003-2	chr2	130906901	130907101	+	982.6666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015523)	promoter-TSS (NR_015523)	506.0	NM_009730	11990.0	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	3.53553737050685	4.02228082792525	3.76674942004708	3.69423693979853	3.84167789060518	4.03830097300048	3.85207144331178	3.81641958427141	0.349920483436892	0.445918346083974	0.731738237991726
Merged-chr2-145884794-7	chr2	145884585	145884785	+	885.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 12 of 12)	intron (NM_028724, intron 12 of 12)	-18556.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	3.72010440135803	3.30849023205292	3.38168147792872	3.56072472691205	3.21979477356009	3.02992422464377	3.25390745007612	3.37984114936933	-0.998954657215064	0.0734950327406184	0.292020271770307
Merged-chr15-84254341-6	chr15	84254250	84254450	+	958.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	Tigger17c|DNA|TcMar-Tigger	22307.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	4.99730708084108	4.67857310620305	4.53673380212092	4.84763791887745	4.68802111946945	4.80354926631493	4.80249922621069	5.33145510343612	0.298313467962047	0.410930539366275	0.706273206869081
Merged-chr15-19856077-1	chr15	19855977	19856177	+	762.0	f0_c57.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	670704.0	NR_155419	102639102.0	Mm.463245	NR_155419	ENSMUSG00000115803	Gm35496	-	predicted gene, 35496	ncRNA	2.4943966268181	2.43743157372784	2.58023169263763	2.1274735828877	3.61930539925968	3.4626599795884	3.05748909327453	3.06946547547961	6.62450412875134	1.42947422221162e-11	1.25926417899506e-09
Merged-chr5-35730044-4	chr5	35729946	35730146	+	923.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194344)	promoter-TSS (NM_194344)	-770.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	4.93233193914324	4.86055383622091	4.37558553814603	4.5528286670945	4.76458309626801	3.99943445322711	4.40163603763462	4.50547211461453	-0.523314138099664	0.216293843858947	0.522833404170659
Merged-chr2-27740366-4	chr2	27740273	27740473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 2 of 9)	intron (NM_001290481, intron 2 of 9)	29790.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	9.31509555878899	9.47212433950377	9.42461970989468	9.34165100583565	9.49576578643882	9.59757776515025	9.43865322983704	9.1796632947824	0.0588988620712895	0.695758239116269	0.876851576599482
Merged-chr4-150220814-4	chr4	150220712	150220912	+	886.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16385.0	NM_023119	13806.0	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding	4.27679675991509	4.24817832723296	4.4002503677744	4.48819298353371	4.13778192700863	3.93880200992632	4.2150323331137	4.18557636691605	-0.604167138971332	0.132094443320674	0.404600315148309
Merged-chr7-109210005-4	chr7	109209887	109210087	+	812.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-34780.0	NM_001302205	109594.0	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	3.94823155783701	4.11941569347624	4.11001376380809	4.68756808769852	4.07701770594433	4.28645766339206	4.18915956813613	4.73414678220537	0.181650383731119	0.698758390774829	0.878505428649175
Merged-chr8-10848292-4	chr8	10848207	10848407	+	957.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34147.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	5.38402505778576	5.53907028324187	5.07795211543835	5.60607525063442	5.13197012066179	4.60810179147564	4.78675431237285	5.38116261449176	-0.754147699941222	0.0317415505812255	0.173784442471273
Merged-chr11-3914715-4	chr11	3914642	3914842	+	826.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153142)	promoter-TSS (NM_153142)	-78.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	3.89500290266326	4.19272948459023	3.67521558987494	3.72290058232526	4.11907184357538	3.91028720181335	4.02146243791607	3.94295566219616	0.336729771398349	0.454900487461689	0.738600531546823
Merged-chr8-94955292-4	chr8	94955213	94955413	+	990.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-21796.0	NM_001198894	14766.0	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	4.91652986302876	4.70088595518457	5.24891672857928	4.84191843245546	5.49442700751423	5.0565006288608	5.35954355482639	5.05701487200362	0.632295518301983	0.0547819998666857	0.244471972947387
Merged-chr10-79533838-4	chr10	79533760	79533960	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302442)	promoter-TSS (NM_001302442)	-73.0	NM_001302389	50784.0	Mm.28873	NM_015817	ENSMUSG00000052151	Plpp2	Lpp2|PAP2-G|PAP2-gamma|PAP2c|Ppap2c	phospholipid phosphatase 2	protein-coding	4.69421609320515	4.5153991887451	4.34405145591655	4.26111452014278	4.39531730232371	4.42656090836594	4.45157082726102	4.24842553554228	-0.161035082648275	0.674768917923599	0.866330912606255
Merged-chr19-10525449-8	chr19	10525358	10525558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025333)	promoter-TSS (NM_025333)	214.0	NM_172302	269061.0	Mm.490260	NM_172302	ENSMUSG00000034820	Cpsf7	5730453I16Rik|AL022757|C330017N18Rik	cleavage and polyadenylation specific factor 7	protein-coding	6.21843041850237	6.41282740770472	6.44227119372154	6.07168567887903	6.41060938858916	6.86010391057843	6.28468514924941	6.69769623716103	0.436693652490334	0.0737273973920748	0.292443073162251
Merged-chr9-44881438-4	chr9	44881333	44881533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357549)	promoter-TSS (NM_001357549)	-159.0	NM_001081049	214162.0	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	7.19394298568665	7.57408011553607	7.49962150559553	7.15115760473654	7.55751926839509	7.60231047465825	7.13604061148028	7.10709317401235	0.0158596413950931	0.941769386847208	0.97898049638905
Merged-chr7-100932884-4	chr7	100932759	100932959	+	907.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081116)	promoter-TSS (NM_001081116)	-698.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	4.66993786998968	4.96917064371988	4.41969709355062	4.68252995536816	4.69853293124985	4.64026059697711	4.48862536273029	4.41699635633165	-0.286019973605736	0.436321784102475	0.725087510987815
Merged-chr2-166181134-6	chr2	166181003	166181203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25420.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	6.52920985036299	6.21994127508621	6.46917763304945	6.31003949615639	5.9197068563913	6.30496880475244	5.63375510414635	5.99464197698188	-0.618165928386219	0.0148590948165742	0.104130699020275
Merged-chr3-83821982-3	chr3	83821884	83822084	+	935.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	19624.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	3.92042324418676	3.98943362154956	4.51074958660762	4.52485524287569	3.6851626461952	3.67609786831645	4.38403207563154	3.74831002779187	-0.94462360954229	0.064919991511085	0.271022736067102
Merged-chr7-120226648-4	chr7	120226537	120226737	+	899.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026458, intron 9 of 30)	intron (NM_026458, intron 9 of 30)	22673.0	NM_026458	67928.0	Mm.158178	NM_026458	ENSMUSG00000062017	Abca14	1700110B15Rik|4930539G24Rik	ATP-binding cassette, sub-family A (ABC1), member 14	protein-coding	3.47726531714486	3.46520430040423	3.69748160804401	4.0597237366074	3.80235215819077	3.39722346938489	3.63142141224363	3.64391390838818	-0.251975601033838	0.636333017878802	0.846149710990216
Merged-chr10-117897951-4	chr10	117897854	117898054	+	956.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27505.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	4.36033313836677	4.66697901436131	5.15631091192738	5.23450390363939	4.67809540172822	4.3876059023813	4.39079615703127	4.66814898259917	-0.781083715833503	0.0561216812544565	0.247975850835041
Merged-chr2-117314003-4	chr2	117313901	117314101	+	934.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 2 of 16)	intron (NM_011246, intron 2 of 16)	28876.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	4.58065029903713	4.82630564618879	4.31006724683134	4.58195397796589	5.15387972482583	4.27533419879838	4.97489385212599	4.69706076062182	0.511496439837303	0.205725600244059	0.509445159300775
Merged-chr6-52204526-4	chr6	52204425	52204625	+	965.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010453)	promoter-TSS (NM_010453)	62.0	NM_010453	15402.0	Mm.173	NM_010453	ENSMUSG00000038253	Hoxa5	Hox-1.3	homeobox A5	protein-coding	4.50048062976851	5.07134860978074	4.64235751690517	4.60947476987892	5.05865250105065	5.32529965454263	5.41893871582375	4.98989691946263	0.942532810720366	0.00628841548678924	0.0561564663744157
Merged-chr10-95532417-4	chr10	95532292	95532492	+	951.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	intron (NM_080560, intron 1 of 3)	17230.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	4.5555911699754	4.97867154429998	4.8058374719413	5.01420294926839	4.68413615431387	4.94183357816108	5.02149567842958	4.94546343831125	0.0621871430078781	0.855991930670758	0.945801681068115
Merged-chr12-35054607-4	chr12	35054499	35054699	+	878.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	7410.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	4.41501906528396	4.10405620961584	4.00662500410422	4.50992402896835	4.32913619985435	4.67461442141817	4.59668989251526	5.08030396696128	0.903976580402357	0.0338224062658896	0.181379119686563
Merged-chr10-59324015-2	chr10	59323915	59324115	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	719.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	4.26397382683362	4.52769385778051	4.4439690012549	4.4495852770806	4.27135841337433	4.53064947598993	4.46453709015044	4.56073098501975	0.0574872866793695	0.877021126715564	0.953885505336535
Merged-chr17-8801124-5	chr17	8801026	8801226	+	859.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011866)	promoter-TSS (NM_011866)	-619.0	NM_011866	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	5.18484662059394	5.19015898548175	5.2980154916474	5.53851750930706	4.54252475252623	4.42362666123759	4.70962979324092	4.76971669414587	-1.42351967297556	2.67736964995911e-05	0.000658508964459016
Merged-chr17-46680974-4	chr17	46680866	46681066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027910)	promoter-TSS (NM_027910)	-20.0	NR_102392	17256.0	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	8.38849886401626	8.46916027372413	8.38461349814674	8.17323709212093	8.40805151288663	8.40002603993543	8.36629364255915	8.07806551904964	-0.0398836891008828	0.810967295007476	0.926854276252049
Merged-chr9-22002768-4	chr9	22002684	22002884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029939)	promoter-TSS (NM_029939)	-150.0	NM_029939	77609.0	Mm.159953	NM_029939	ENSMUSG00000039632	Ccdc151	AI644415|C330001K17Rik|b2b1885Clo	coiled-coil domain containing 151	protein-coding	9.07606916239455	9.42418484390438	9.33463942856458	9.20915444891614	9.48039511917389	9.65500232659913	9.33877222956861	9.3061283698282	0.227236596757645	0.149719812040199	0.432136024541152
Merged-chr5-135568746-4	chr5	135568709	135568909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	4240.0	NM_019577	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	6.46052441277931	6.04386166652301	6.62485614273852	6.2638416060493	6.24075511345849	5.93771348924489	6.02180846195048	5.98082634677364	-0.453665016440624	0.0719945717868437	0.28833022553154
Merged-chr9-109985619-4	chr9	109985529	109985729	+	929.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205332, intron 2 of 17)	intron (NM_001205332, intron 2 of 17)	53855.0	NM_008633	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	4.16435582165031	4.35482935480484	4.00350895777349	4.46937259262182	4.40676462195612	3.94509293102144	4.57087427722165	4.96325153229272	0.578927625130607	0.202827328668817	0.505367754389162
Merged-chr19-46047620-3	chr19	46047518	46047718	+	659.455566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2307.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	3.58909709405381	3.73554118181023	3.58955299164947	3.85294660586775	3.61766218812585	3.76198158553438	3.7835912257123	3.84466469112397	0.121303827984372	0.795648288438685	0.920897975671128
Merged-chr16-35776693-6	chr16	35776599	35776799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152314, intron 1 of 8)	intron (NR_152314, intron 1 of 8)	6313.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	5.44425941418959	5.80593142271581	6.07673613823324	5.79052531107089	5.64518278555194	5.82461014671395	5.61989560561974	6.03362882140415	-0.0188483131862754	0.945881539992951	0.980641198659378
Merged-chr5-102063272-4	chr5	102063159	102063359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	6662.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.4890052209634	5.42612698617052	6.31642888987436	6.11019966721786	5.82622892925925	5.87082015423473	5.81501185401813	6.27875311976848	0.0981322125623637	0.757050764260603	0.904554066545557
Merged-chr1-132417802-1	chr1	132417702	132417902	+	841.0	f1_c57bl6.idr	exon (NM_172516, exon 1 of 13)	exon (NM_172516, exon 1 of 13)	349.0	NM_172516	213452.0	Mm.257120	NM_172516	ENSMUSG00000042046	Dstyk	A930019K20Rik|C430014H23Rik|C820013G01|Ripk5	dual serine/threonine and tyrosine protein kinase	protein-coding	4.08183055808686	4.42056925052232	4.52173445763963	4.32316960534513	4.22296348764167	4.03919614671345	4.21222935869535	4.6252429292387	-0.12669725357577	0.758748787004884	0.905296757937236
Merged-chr2-114260600-4	chr2	114260510	114260710	+	921.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59178.0	NM_175466	228491.0	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	4.36617565384674	4.40948730838015	4.6113637997088	4.8524965074608	4.25482365298293	4.49613412128099	4.58945035469448	4.0631766873296	-0.518670854153873	0.20126861613781	0.503556256669362
Merged-chr19-34254595-4	chr19	34254486	34254686	+	741.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007392, intron 1 of 8)	intron (NM_007392, intron 1 of 8)	787.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	4.48212541151113	4.05932155223162	4.62488449596321	3.89766773722577	4.05813953205768	4.10881095078782	4.5335938165591	4.13697163725854	-0.161753413978393	0.722274522637938	0.889145957666795
Merged-chr4-43041414-3	chr4	43041322	43041522	+	883.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	-1121.0	NM_001253354	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	4.23113399449195	4.1971820237942	4.05093980232537	3.97691020606355	4.42544039321864	4.07260439834101	4.03376197035188	3.78044498663626	0.00256070425565369	0.995385353882267	0.998318694595211
Merged-chr18-35119005-4	chr18	35118948	35119148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009818, intron 1 of 17)	CpG	136.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	5.49351529247098	5.53788848734689	6.06684168786533	5.48510268952858	5.50176253944941	5.86566828918632	5.95697535477934	6.1185962276411	0.348808930896309	0.240698418518861	0.55129751043389
Merged-chr4-99715602-4	chr4	99715519	99715719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081264)	promoter-TSS (NM_001081264)	-11.0	NM_001081264	320438.0	Mm.32408	NM_001081264	ENSMUSG00000073792	Alg6	E230028F23Rik	asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)	protein-coding	7.81628952746876	7.85539003913541	7.92976372658735	7.99526047488812	8.19740937275524	7.95545964840641	8.18293569948863	8.00741301001798	0.242953642638126	0.136752084519194	0.411302147553101
Merged-chr6-3447640-4	chr6	3447556	3447756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	46842.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	6.32496930868146	6.80232164236204	6.52813289741979	6.69447407456091	6.92056121636638	6.81806337810581	6.80725688512208	6.58957724604205	0.262201899077183	0.230829020460741	0.540324218869215
Merged-chr15-96460240-4	chr15	96460170	96460370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028148, intron 1 of 14)	CpG	573.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	6.02893811790418	5.8934839072432	6.31029811256291	6.10270521458713	5.98858393092801	5.60627465529012	6.01981970827799	5.77145966327857	-0.355403199637325	0.1666911813943	0.458039966547908
Merged-chr17-46266068-2	chr17	46265968	46266168	+	891.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252475, intron 1 of 8)	intron (NM_001252475, intron 1 of 8)	11903.0	NM_001111142	224813.0	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	3.49165851488302	3.40823868682863	3.38051965354506	3.13639570644692	3.77303278005938	3.37160173413999	3.5793516878876	3.31925781027401	0.618709253427991	0.243475160702487	0.554570190836555
Merged-chr17-35080010-4	chr17	35079912	35080112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163192)	TTS (NM_001163192)	3070.0	NM_027366	70274.0	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	4.85043953071779	4.84359096669392	5.16805984655725	5.27231587772321	5.17169681909268	5.17651296019462	5.04630714830071	5.31123501311412	0.216016477641115	0.499868556739045	0.768524538060588
Merged-chr6-136464133-11	chr6	136464008	136464208	+	925.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	4.5SRNA|scRNA|scRNA	-48539.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	5.19816444075186	5.1437316046725	5.5452436439661	5.68887625216312	4.82784692976181	4.71847102661996	4.78508819329918	4.92326892200513	-1.17055351892082	0.000416222113271251	0.00664415200729634
Merged-chr18-37910415-2	chr18	37910315	37910515	+	884.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305980, intron 1 of 27)	intron (NM_001305980, intron 1 of 27)	25061.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	3.33021967471926	3.05070655196941	3.4957035530224	3.15260075318014	3.49271435635093	3.38443320007215	3.37472708438985	3.63947329918993	0.768790516372541	0.148601646263042	0.430423321537467
Merged-chr9-110732797-4	chr9	110732666	110732866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083936, intron 1 of 13)	GC_rich|Low_complexity|Low_complexity	9844.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	7.470074584422	7.34658129460639	7.36277074713417	7.77241465987401	7.37227698801053	7.42149884929631	7.68156063334722	7.51257189528659	-0.0168905884002541	0.931260558447632	0.975270282486266
Merged-chr17-69382840-4	chr17	69382752	69382952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356283)	promoter-TSS (NM_001356283)	-323.0	NM_001356283	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	8.09526305882225	8.17037572114638	8.45658183094158	8.06089172431739	8.3697096686908	8.27428440880824	8.51570759476968	8.01739657680557	0.13702844017459	0.454352046922846	0.738211882214185
Merged-chr6-129407102-1	chr6	129407002	129407202	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-1760.0	NM_001205363	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	5.24813922477476	4.80377369574521	5.15889150135573	5.17686822748466	5.24843610630351	4.8964707343912	5.07015761860429	5.09151785646801	-0.0327300349242144	0.918065065534063	0.969798468133041
Merged-chr16-33745614-4	chr16	33745490	33745690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 10 of 14)	intron (NM_175256, intron 10 of 14)	-48447.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	6.71141267808646	6.50281516618608	6.98700889383568	6.83128896097281	6.69286921287581	6.3536503354729	6.67839688275321	6.61696839394819	-0.246487563612646	0.264469852479674	0.576455127446606
Merged-chr17-27623545-4	chr17	27623453	27623653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019837)	promoter-TSS (NM_019837)	-101.0	NM_019837	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	6.93480482439947	6.89215228065675	6.84414822472044	6.57157226489651	6.71472551247816	7.0067322000303	6.80940964880906	6.81177363226156	0.0416306132193011	0.8424108905115	0.940205423428672
Merged-chr16-23376333-4	chr16	23376228	23376428	+	901.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52805.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	4.3108384411107	4.0517554080784	4.51881502651622	4.39761554703878	4.20587385487569	4.48457048054103	4.4590785390412	4.47705366669735	0.169731355375958	0.664538932380349	0.861009602629657
Merged-chr17-72919449-7	chr17	72919318	72919518	+	851.5476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029999, intron 1 of 2)	CpG	1113.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	4.76268121409233	4.3817514844335	4.69175980903068	4.62603540851674	4.50916567449359	4.57909337301795	4.63245941206065	4.57300075316347	-0.107321895398146	0.76208920005064	0.906789722625838
Merged-chr7-29228366-4	chr7	29228265	29228465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033525, intron 1 of 2)	intron (NM_001033525, intron 1 of 2)	4157.0	NM_001033525	52150.0	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	7.33829163672126	7.40428947347882	7.57758276176013	7.42866516755909	7.39245850467453	7.73711913553991	7.63194477858965	7.35524155348752	0.125970806149882	0.496062030292152	0.766058830608187
Merged-chr17-31801025-3	chr17	31800917	31801117	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	54787.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	3.19516044338236	3.089392059228	3.19554495777496	2.3877644542111	4.58920300550924	4.67070370856284	5.29437011762923	4.44950350487081	8.6193386452573	3.33397407068442e-19	1.02288336369503e-16
Merged-chr4-34295863-2	chr4	34295763	34295963	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-245796.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	3.35246266137397	3.57203007084206	3.46073240941727	3.02595244429381	3.22471497417366	3.28498105803269	3.16167699599664	3.45868498128171	-0.270682386650226	0.632687249152449	0.844069944497123
Merged-chr1-97714898-4	chr1	97714803	97715003	+	960.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173760, intron 25 of 27)	intron (NM_173760, intron 25 of 27)	-52885.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	5.1207307821999	5.0092046215157	5.01646745805305	5.46188302928593	5.59156381994272	5.2285799430249	5.41875621871725	4.81676933003217	0.22379396743502	0.516204298312779	0.778006346996534
Merged-chr10-95563702-4	chr10	95563599	95563799	+	941.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027722, exon 1 of 5)	exon (NM_027722, exon 1 of 5)	447.0	NM_027722	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	4.24238376539141	4.4135636428407	4.68741617579789	4.24146640416324	4.36676704682607	4.4185807447847	4.36068979316934	4.50151270177768	0.0316738144210541	0.934191961934648	0.976314818502178
Merged-chr2-4517789-3	chr2	4517690	4517890	+	849.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 7 of 23)	intron (NM_001177843, intron 7 of 23)	-41964.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	3.46148257270033	3.44109313713738	3.57146070467047	3.83730293688696	3.5571989258591	3.45455179598061	3.44920678269045	3.5694750349836	-0.30158259725377	0.553111016554069	0.799974396526481
Merged-chr16-97461487-4	chr16	97461384	97461584	+	778.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010846, intron 1 of 10)	intron (NM_010846, intron 1 of 10)	1421.0	NM_010846	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	3.61650680499945	3.53622169234079	3.44125755129479	3.87899206685735	3.87089345543488	3.78794465026703	3.60306947570077	3.72006529177917	0.320135466275226	0.516384154093422	0.77810009842189
Merged-chr8-41039669-4	chr8	41039554	41039754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 5 of 13)	intron (NM_001005863, intron 5 of 13)	2277.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	5.84931901945571	5.34118958566996	5.78080537982156	6.07658904170683	5.87606438333702	5.43920772722004	5.90705162386244	5.59793642581076	-0.122572765343093	0.682377421725702	0.869776740164635
Merged-chr1-151511170-3	chr1	151511078	151511278	+	647.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10187.0	NM_001360847	19821.0	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	3.04784563712191	2.7842162814639	2.93730039888136	3.01964902309249	2.72055724227174	2.71244171161635	2.8063982251289	2.81438249610146	-0.890466930092812	0.157499635952258	0.444059226672193
Merged-chr11-68875010-4	chr11	68874917	68875117	+	877.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13536.0	NM_177060	320040.0	Mm.305696	NM_177060	ENSMUSG00000046490	Rnf222	9930039A11Rik	ring finger protein 222	protein-coding	4.39504897281206	4.41990183290424	4.55429879191717	4.06876155287184	4.27451650071088	4.07149886481256	4.49513054891558	4.58790912776635	0.0332485376329262	0.935381093781398	0.976553886506881
Merged-chr13-115150889-6	chr13	115150810	115151010	+	804.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48946.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	3.72807390513249	3.39632984487311	3.86719140929914	3.78830217211844	3.5514205191368	3.4449307265453	3.55914172295555	3.62494462711375	-0.511185473771894	0.303373349154784	0.616015622168323
Merged-chr15-78915912-4	chr15	78915859	78916059	+	931.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020271, intron 1 of 1)	intron (NM_020271, intron 1 of 1)	2040.0	NM_020271	57028.0	Mm.263169	NM_020271	ENSMUSG00000116165	Pdxp	1600027H05Rik|AB041662|PLPP	pyridoxal (pyridoxine, vitamin B6) phosphatase	protein-coding	4.27704085176482	4.23443252111058	3.72239363583195	3.80059861052045	4.37716923128782	4.12826875553785	4.03665049388555	4.23330180604514	0.467663753919158	0.293240068648271	0.605843923322747
Merged-chr14-76503286-3	chr14	76503195	76503395	+	900.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310647)	promoter-TSS (NM_001310647)	-931.0	NM_001310647	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	3.90894791111425	3.75053585304899	3.28093036127399	3.85036125758706	3.934456999208	3.72104544374977	3.64601768594063	3.86109345730654	0.21599626614776	0.669214165408057	0.863427252946745
Merged-chr1-150375529-1	chr1	150375429	150375629	+	675.0	f0_balb.idr	exon (NM_145511, exon 10 of 14)	exon (NM_145511, exon 10 of 14)	-17309.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	2.52523012573901	2.49037476911757	2.80641952922304	2.81022699818058	2.07337738268032	2.34975623918658	2.1631285788427	2.16657364711816	-4.07641722120735	0.000253107121774273	0.00441025993164528
Merged-chr7-101551713-4	chr7	101551601	101551801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_033804)	TTS (NR_033804)	4101.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	7.97944468054406	8.54714636412006	8.0936280590425	7.73288732519287	8.128937184781	8.1859310551155	7.90021856091893	7.91858049388737	-0.102547545160255	0.630751354511833	0.843058749817812
Merged-chr4-99211837-4	chr4	99211737	99211937	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175029, intron 1 of 10)	intron (NM_175029, intron 1 of 10)	17690.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	4.8605249075621	4.71384668132683	4.93253347474376	5.21687397298895	4.93869646658942	4.75421999120887	4.90883478200833	4.89415880248778	-0.168658131809605	0.618695907485584	0.83605110678734
Merged-chr16-91415743-7	chr16	91415633	91415833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 4 of 6)	intron (NM_008349, intron 4 of 6)	9498.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	5.95639985391921	6.36969150063344	5.9083724391955	5.71003041926301	6.44962395930518	6.59246399780077	6.31567746953481	6.72231337175456	0.795074947679684	0.00196975882049835	0.0231553200799755
Merged-chr2-167420833-4	chr2	167420748	167420948	+	767.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148929)	promoter-TSS (NM_148929)	-862.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	3.44013382442353	3.53771681418708	3.73014477993139	3.52487022519214	3.50014990635594	4.25581375839746	3.76475254985091	3.77886411282769	0.856457647576718	0.0884487357436706	0.324545902007982
Merged-chr2-129370369-7	chr2	129370295	129370495	+	953.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008361, intron 1 of 6)	intron (NM_008361, intron 1 of 6)	493.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	4.54091127900683	4.68531366333189	4.74268846536124	3.48317666978288	4.91737354246962	5.37559531625063	4.79097556271067	4.35280115470969	0.92161113304467	0.0667642198725026	0.275522402962944
Merged-chr4-149820730-3	chr4	149820638	149820838	+	947.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46471.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	3.83565727452376	3.59270790859003	3.83627815688844	3.79776466145744	3.32182598543801	3.22136864098561	3.24004795177158	3.24890611481574	-1.79267910133502	0.000931490651247517	0.0127089463417955
Merged-chr12-105981576-3	chr12	105981483	105981683	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-28680.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	3.41610934619898	3.22478184142032	3.25383135240807	2.64754914500942	4.63517886262439	5.05529916543302	4.59027545837193	4.54415088081636	5.56880923347176	3.23535783545547e-19	9.96924395540628e-17
Merged-chr5-129670126-4	chr5	129670039	129670239	+	817.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172462)	promoter-TSS (NM_172462)	-51.0	NM_172462	22648.0	Mm.135067	NM_172462	ENSMUSG00000051034	Zfp11	6720465D24|Krox-6|Zfp-11	zinc finger protein 11	protein-coding	4.07851263789204	4.36839330550144	3.91861536543055	4.2308056591212	4.0761672369877	4.3935422764706	4.33062959676174	4.34788939465646	0.28964598066056	0.481053124520308	0.756340723375945
Merged-chr2-155299666-3	chr2	155299550	155299750	+	941.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004721, intron 8 of 11)	intron (NM_001004721, intron 8 of 11)	23286.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	4.4205865049283	4.57932736551473	4.42133381322367	4.69857023042327	3.35619979306932	3.57334228115423	3.84008761180869	4.16603883539709	-2.12443349532957	3.19745779091001e-05	0.000766044591380625
Merged-chr7-44836536-3	chr7	44836449	44836649	+	883.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010215, intron 2 of 7)	intron (NM_010215, intron 2 of 7)	261.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	3.58671078996875	3.54465449043488	3.73739143682652	3.43786638922285	3.57156612822657	3.33464657239974	3.51923992875388	3.78135441606153	-0.0296228747304237	0.952802216689434	0.983276598943455
Merged-chr1-165643209-4	chr1	165643100	165643300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8659.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	5.27163199393057	5.08980459668328	5.52412592133994	5.23635840458284	5.24916402569281	5.2838552630291	5.52117611043883	5.38710611797429	0.142513778448575	0.62671686198158	0.840727549606008
Merged-chr1-64534108-4	chr1	64534011	64534211	+	849.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037726, intron 1 of 6)	intron (NM_001037726, intron 1 of 6)	1307.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	4.18220119337176	4.17234893848165	3.98090918457834	4.14252649254146	4.53792694492474	4.48580452588352	4.29631972209941	4.03207132909917	0.575154711888878	0.155287306912887	0.440963664675351
Merged-chr8-76900473-7	chr8	76900416	76900616	+	905.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028579, exon 1 of 2)	non-coding (NR_028579, exon 1 of 2)	105.0	NR_028579	102640923.0	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	-	predicted gene 10649	ncRNA	3.79636966286063	4.03152415652825	4.40900836397031	4.06964952621575	3.91284600200051	4.3334047830062	4.09753465107796	4.32904499055381	0.205248828700866	0.64080777615209	0.848375431491883
Merged-chr2-22744897-4	chr2	22744807	22745007	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-29420.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	4.86658615647529	5.00302842211825	4.79104412744284	4.6566141258461	4.70336029655981	5.07845372438022	4.7288527938301	5.49228518138612	0.409683724297582	0.263685727754879	0.575798866850306
Merged-chr7-111082402-5	chr7	111082326	111082526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013507, intron 1 of 21)	CpG	604.0	NM_001040131	13690.0	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	6.32679321796957	6.56543490296976	6.78502463541694	6.46519326884075	6.61315590683176	6.80098884819668	6.40778715154187	7.09297012330499	0.298265689140964	0.214866070968776	0.520854730840221
Merged-chr12-55473616-2	chr12	55473516	55473716	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19031.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	5.14543320954096	5.11256513146443	5.08525484609624	5.2536595283725	4.83465988950057	4.77521974981759	4.78380779057407	4.54602611557787	-0.825873945119286	0.0107719133493555	0.0833549191505092
Merged-chr2-120609393-4	chr2	120609313	120609513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025475)	promoter-TSS (NM_025475)	31.0	NM_025475	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	6.69892019845956	6.63976423418476	6.22360352022899	6.63466181841014	6.732361886968	6.3383986687718	6.46776659071289	6.25982068418644	-0.136131197959565	0.56704094763697	0.808122532096819
Merged-chr17-28329383-3	chr17	28329268	28329468	+	887.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357628, intron 3 of 5)	intron (NM_001357628, intron 3 of 5)	803.0	NM_001357628	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	3.3494810658572	2.91538846928367	3.01746022449314	2.65351331170906	3.05639703436234	3.06491582921675	2.80538927453364	3.39564141866776	0.365622139469349	0.577789111846863	0.814320671474494
Merged-chr14-121000736-3	chr14	121000598	121000798	+	867.0499880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-34876.0	NM_134082	223254.0	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	3.04201792819077	2.96050708172697	3.19099860486757	3.0308385711511	3.66124741640608	3.78905544069017	3.78826472329867	4.11830732830101	2.70805650463835	1.03964595881923e-06	3.63105788531865e-05
Merged-chr18-60963681-2	chr18	60963581	60963781	+	764.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009792, exon 1 of 7)	5' UTR (NM_009792, exon 1 of 7)	127.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	2.79356651356595	2.87015801678649	2.73551509594201	2.30674518141921	2.63408249738111	2.42072559269839	2.66432153974532	2.39560109845714	-0.802955745418218	0.289859299567934	0.601934154625568
Merged-chr12-79725864-3	chr12	79725794	79725994	+	764.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	198839.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	3.39637027582932	3.22044683963409	3.34480499414031	3.28313612038584	3.13646803283903	2.93735977739759	3.22179080959315	3.34290879223131	-0.539405311691926	0.335289927669869	0.645664740658801
Merged-chr15-59415156-2	chr15	59415056	59415256	+	911.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	40958.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	3.3677485925414	3.13954286612473	3.1402133259942	2.96787999478361	3.23224258308194	2.81341291349679	3.18885189278785	3.68665337316589	0.401066911466406	0.525208137521086	0.783229855070132
Merged-chr15-79670810-4	chr15	79670708	79670908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172609)	promoter-TSS (NM_172609)	-60.0	NM_172609	223696.0	Mm.246435	NM_172609	ENSMUSG00000022427	Tomm22	2310047D01|Tom22	translocase of outer mitochondrial membrane 22	protein-coding	6.30213138281246	6.25293029428186	5.76928884535605	6.03092107082503	6.40367761400519	6.34538802763727	6.57399945610624	6.14451791651527	0.415872719849605	0.0910590933283138	0.329779953394528
Merged-chr6-135240582-4	chr6	135240491	135240691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080552, intron 4 of 5)	intron (NM_001080552, intron 4 of 5)	7293.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	6.1654940634965	5.98071859641858	6.0213331195082	6.50633864350735	5.71974164794578	6.13033967709491	6.2467735889147	6.12238126542665	-0.220580445458789	0.413293241341794	0.708299415536261
Merged-chr6-99241825-4	chr6	99241731	99241931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	24684.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	7.68224179133499	7.97450894595164	7.88570119825441	8.0430933430845	7.71007714270351	7.62017270913842	7.93739986050333	7.5909688416298	-0.244548735663895	0.174933189357661	0.469590383048546
Merged-chr5-105053755-5	chr5	105053714	105053914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029509)	promoter-TSS (NM_029509)	-253.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	4.48548579496582	4.2532621232691	4.5777431640249	4.04727170230337	5.3717877037904	5.19592392692683	4.96632745717863	5.13917994721374	1.7833157542404	4.25070766720901e-07	1.59831548359361e-05
Merged-chr6-87553801-3	chr6	87553730	87553930	+	679.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20571.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	3.05738823700612	3.19809601642238	3.38120744087576	3.04746985840348	2.99397483451546	3.03771000228056	2.77985597166239	3.173221864919	-0.696060744781241	0.249588758000842	0.560655101642375
Merged-chr10-21712062-4	chr10	21711947	21712147	+	804.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21202.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	3.37066372151608	3.44253051421579	3.4273171172036	3.47529697532064	3.47366701413964	3.29673081658275	3.6143194920559	3.24927706745704	-0.0426078388518311	0.934026993547365	0.976242747884875
Merged-chr15-74672650-4	chr15	74672558	74672758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276684)	promoter-TSS (NM_001276684)	-88.0	NM_018790	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	8.4071976518426	8.32017431818832	8.24003877275188	8.49252103752285	8.16107375529839	8.41778312295657	8.19541155482126	7.79241082493746	-0.270107002266864	0.138778223353718	0.414381792154761
Merged-chr17-71196839-3	chr17	71196725	71196925	+	851.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	-7829.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	4.07918694301362	3.82847175355083	3.50489565472073	3.85602978085624	3.53414155180146	3.4244724988917	3.55064242937895	3.72458003391776	-0.83942536279543	0.0929076444153344	0.333552636168877
Merged-chr8-25087743-4	chr8	25087639	25087839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 2 of 11)	MIR3|SINE|MIR	14072.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	7.61017945809661	7.78480675647006	7.51264615458068	7.57517755116918	7.72760377051469	7.70835175083795	7.5480450143859	7.46962877379726	-0.00458876462318359	0.979182293287342	0.992606608380485
Merged-chr15-74596124-3	chr15	74596010	74596210	+	812.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40208.0	NM_001177437	69439.0	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	3.40585417198027	3.82344382145132	4.04614373021185	3.32084494994057	3.35776796978429	3.18569977491674	3.2708667941719	3.34396101792924	-1.30904612772886	0.0237662164078326	0.143421408876059
Merged-chr7-142457787-2	chr7	142457696	142457896	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-3016.0	NM_001271510	16985.0	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	2.88283682648777	2.9994163383718	2.88310893246997	2.79801429221649	3.67368336954171	3.81275624217686	3.33207134593811	3.45176535514101	2.65912902942654	4.12569785176339e-06	0.000125282870047213
Merged-chr17-80206825-4	chr17	80206716	80206916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360435, intron 1 of 6)	CpG	489.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	7.07946810032566	7.21104033224726	7.44627355976906	7.460891072775	7.65134500240913	7.69793807060835	7.61228133673909	7.59458463686117	0.426646418755151	0.0198790230574716	0.127589628693217
Merged-chr7-80849934-4	chr7	80849812	80850012	+	938.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12196.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	4.52793941292986	4.37163148575196	3.98035187429627	4.4994532173556	4.83991888875541	4.77869020638798	4.4243795542978	4.67887391640504	0.710127833095473	0.0692654424253544	0.28150307904501
Merged-chr2-45112208-4	chr2	45112107	45112307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110571)	promoter-TSS (NR_110571)	-53.0	NR_110571	433424.0	Mm.441408	NR_110571	ENSMUSG00000052248	Zeb2os	Gm13476|Zeb2nat	zinc finger E-box binding homeobox 2, opposite strand	ncRNA	6.77465870052188	6.92457540772846	6.29318851056475	6.48928671721778	6.78169791120787	6.83619755961051	6.53213353055848	6.54455052836057	0.0609951220876429	0.795559425708537	0.920897975671128
Merged-chr10-67998201-3	chr10	67998117	67998317	+	919.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359319, intron 3 of 11)	intron (NM_001359319, intron 3 of 11)	18647.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	4.35628573976481	4.06107539177696	3.93137663331362	4.05907130850008	4.21280880823279	3.76928640061391	3.81109352730604	3.70971034524494	-0.545146147022046	0.243311905851902	0.554322508934242
Merged-chr2-69676892-3	chr2	69676792	69676992	+	813.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081087, intron 3 of 5)	B2_Mm2|SINE|B2	6772.0	NM_001081087	228003.0	Mm.178784	NM_001081087	ENSMUSG00000075307	Klhl41	Gm112|Kbtbd10|SARCOSIN	kelch-like 41	protein-coding	2.89038727169587	3.19228744979217	2.81556204858372	2.65194529315017	3.43735077013551	3.38766131547836	3.36211841959772	3.32340403334883	1.95499459988841	0.00118554122725718	0.0154129021031852
Merged-chr10-41288976-4	chr10	41288863	41289063	+	905.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133999, intron 1 of 22)	intron (NM_133999, intron 1 of 22)	14278.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	4.47617520297296	4.12627149906691	4.20376541526584	4.37268837006956	4.23626006178722	4.43091946993547	4.57240538301976	4.97431026648374	0.622276184631388	0.127427856625807	0.397257682496861
Merged-chr18-64599975-1	chr18	64599875	64600075	+	771.0	f0_balb.idr	intron (NM_001001488, intron 2 of 27)	intron (NM_001001488, intron 2 of 27)	61025.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	2.63897887036491	2.87232274521702	2.6993752523067	2.75639050575055	2.3326807059256	2.46863165950712	2.3613573047767	2.36602306130983	-2.25281072287968	0.00408051196188238	0.0406845161696072
Merged-chr7-74974676-4	chr7	74974564	74974764	+	922.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55547.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	4.29875060260914	4.03601724094021	4.34573917558409	4.14058657609824	4.41883048198356	4.4762657501997	4.92459228769284	4.7320158231657	1.02702270815827	0.00783565262476547	0.0662313167293886
Merged-chr18-58567289-4	chr18	58567188	58567388	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081072, intron 1 of 9)	Lx7|LINE|L1	11048.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	4.41426197775904	5.03447893781206	5.00344790152851	4.81081319627302	4.8502702420213	4.9720604476922	4.84747229940409	4.36187675369309	-0.122283892271665	0.745216003793975	0.899431814827356
Merged-chr14-66931773-3	chr14	66931657	66931857	+	925.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20549.0	NM_175498	239157.0	Mm.44358	NM_175498	ENSMUSG00000046204	Pnma2	A830049P17Rik|mKIAA0883	paraneoplastic antigen MA2	protein-coding	3.87350651332869	3.72596097246615	4.33743344004611	4.02796503942666	3.78515459096152	3.64460744811208	3.90726799248438	3.92162492195107	-0.533511099218122	0.253813531339334	0.565065370278456
Merged-chr13-69526470-5	chr13	69526322	69526522	+	957.23999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198600, intron 1 of 12)	intron (NM_198600, intron 1 of 12)	7442.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	4.39362259754841	4.75962866740085	4.34849096851945	4.69211655722115	4.08936210228634	4.7344366009939	4.32942066230246	4.67294250948209	-0.216979441148541	0.595026364051616	0.823701700863203
Merged-chr15-79030823-4	chr15	79030743	79030943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161712)	promoter-TSS (NM_001161712)	-31.0	NM_013847	26912.0	Mm.237085	NM_013847	ENSMUSG00000006378	Gcat	AI526977|Kbl	glycine C-acetyltransferase (2-amino-3-ketobutyrate-coenzyme A ligase)	protein-coding	6.71536755193361	6.69371975135566	6.46117057130527	6.73687196617365	6.62208259760923	6.48908289128224	6.73858547491103	6.6526649077185	-0.0484473669481317	0.815150740964156	0.928710624683246
Merged-chr13-103900192-4	chr13	103900098	103900298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 1 of 26)	B4A|SINE|B4	20388.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	5.46029832740888	5.20835236250072	5.67346142699739	6.12925963002328	5.56726930775586	5.31495642154745	5.64459929720721	5.30439268883675	-0.364536406521102	0.270889841788533	0.582670886352706
Merged-chr11-69931162-4	chr11	69931050	69931250	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4749.0	NM_016875	53422.0	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	5.72730973522957	5.28318324658525	5.20111568569353	5.15840312977387	5.30100860579267	5.37659756116446	5.03874047496513	5.35134665961853	-0.139246523383271	0.656015785564745	0.856430271691361
Merged-chr5-105582479-4	chr5	105582378	105582578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	63007.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	5.51540651563639	5.90155800011646	6.19683707262472	5.63367712437457	5.67862353710253	5.83500960623571	5.57518812828377	6.10173556868648	-0.0339537144441199	0.907398047839835	0.96568164776089
Merged-chr8-26978409-1	chr8	26978309	26978509	+	1000.0	f0_balb.idr	intron (NM_001110508, intron 2 of 2)	CpG-13923	1073.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	5.27969106101152	4.7913235739668	5.0870114430168	4.92460098600936	5.0910812315469	5.74369389718921	5.28350529542264	5.47056002965925	0.710863232911096	0.0294180427640857	0.165072673701604
Merged-chr9-61424447-4	chr9	61424342	61424542	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	52076.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	5.27171643798684	5.5124123508726	5.17815997738278	5.10925423360314	5.14477225332652	5.32014874590561	5.30533283033199	5.20685625187935	-0.0511464963348917	0.863960438901386	0.948894455369976
Merged-chr4-105353190-1	chr4	105353090	105353290	+	723.0	f0_balb.idr	Intergenic	Intergenic	195843.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.30152675927646	3.38932359618245	3.57390354955466	3.64399248841504	3.11044435973768	3.35189174048984	3.45796516099324	3.41586929577139	-0.552463782430638	0.304588171230452	0.617126795138548
Merged-chr7-67229076-4	chr7	67228971	67229171	+	928.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175215)	TTS (NM_175215)	6455.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	4.50771695058842	5.05401368310037	4.93077327449911	4.93923510458149	4.61670496041128	4.87407177935016	5.16500604628295	5.64841610215174	0.48999664086378	0.211874384629459	0.516720579166049
Merged-chr11-99449837-4	chr11	99449759	99449959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11706.0	NM_023256	66809.0	Mm.28042	NM_023256	ENSMUSG00000035775	Krt20	9030623C06Rik|Ck-20|Ck20|K20|Krt21	keratin 20	protein-coding	5.49258805161536	4.95660158169064	5.35065011813431	5.59542146434275	5.54592410328485	5.43272267092432	5.49246630402145	5.51638966640476	0.202085612065598	0.501093683458029	0.769095113768232
Merged-chr5-9162422-3	chr5	9162335	9162535	+	863.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011806)	promoter-TSS (NM_011806)	-659.0	NR_152861	23857.0	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	3.85548901921372	3.78936211016151	3.85605464642523	3.77773210884347	3.66694767791433	3.87385129968457	4.01922919494044	3.58356189297579	-0.0697525531961715	0.879000073456979	0.954737458614146
Merged-chr11-22675235-2	chr11	22675135	22675335	+	575.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	162952.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	3.23811051535395	3.0726436440338	3.12218851056571	3.11577075826634	3.12073537564212	3.10325136889281	3.16980772781113	3.39321411280416	0.24804997997749	0.651345518418515	0.853908768105343
Merged-chr10-39440354-4	chr10	39440269	39440469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	70570.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	4.96149486994893	5.14435500012057	4.99663752990875	4.72194207443501	5.28241358763329	4.91203396804233	5.09986862112518	4.55443735041444	0.0903548293889829	0.799353381134325	0.922517256562684
Merged-chr11-8702007-4	chr11	8701937	8702137	+	966.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37502.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	4.18420624084991	4.06661514471254	4.24012612195784	3.70606401236711	5.21191888964231	5.08448854001578	5.29684269747929	4.97057559658716	2.48534215732907	1.57479590489306e-11	1.37875027938971e-09
Merged-chr4-155839652-3	chr4	155839551	155839751	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024263)	promoter-TSS (NM_024263)	-29.0	NM_024263	74761.0	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	6.75964701037502	6.79230172268329	6.70181878795276	6.79248954386702	4.33566299187946	4.68495425513937	4.57012328157284	4.70035345391147	-4.08126498323896	6.00358419389686e-34	1.04226614472533e-30
Merged-chr7-135650250-4	chr7	135650118	135650318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015548, intron 2 of 2)	intron (NR_015548, intron 2 of 2)	-1681.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	6.18652046326692	5.92655063597749	5.72039202537564	6.06711840806782	5.74690688566549	5.6749116264914	5.83611043641648	5.46130882017632	-0.488386707972846	0.0643536183186986	0.26959132471936
Merged-chr14-63104219-4	chr14	63104100	63104300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18262.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	6.89246242892218	6.65606367042322	7.03216164817483	7.16880636971236	7.09495506102973	6.59263163693947	6.73332557658702	7.01523285848333	-0.10554234359179	0.643388986873711	0.849638332939833
Merged-chr6-59011876-4	chr6	59011795	59011995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153574, intron 1 of 17)	intron (NM_153574, intron 1 of 17)	12607.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	6.31918173100128	5.58879705994887	6.63985711781481	6.66807042629829	6.35700213588496	6.09618432726107	6.64720069436899	5.88711551742175	-0.141392794840603	0.65866262393399	0.857995155933081
Merged-chr3-55122606-4	chr3	55122490	55122690	+	849.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001144988, intron 3 of 7)	ORR1F|LTR|ERVL-MaLR	10424.0	NM_001144987	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	4.08325564233409	3.78769974415867	4.33829772788923	4.13425561716797	4.11432738789498	4.16001127456598	3.75265885391926	4.21480832185572	-0.0680644337754632	0.878229388770695	0.954456681704503
Merged-chr13-34051813-4	chr13	34051669	34051869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026512, intron 4 of 6)	intron (NM_026512, intron 4 of 6)	14128.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	6.07718451885894	5.98787105955762	6.03647514819	6.11575224933432	5.86522039945574	6.05461866118737	6.00567475742017	6.15346423387472	-0.0680023785805208	0.772907890176983	0.911052408089747
Merged-chr8-10162425-2	chr8	10162325	10162525	+	788.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001319151, intron 1 of 34)	intron (NM_001319151, intron 1 of 34)	8514.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	3.33526758382633	3.22349416500989	3.27710026771771	3.46409330779734	3.41310519415635	3.38836808016038	3.53102521843948	3.33397762249285	0.282736129700695	0.58515188727501	0.81800934078373
Merged-chr9-83806246-4	chr9	83806114	83806314	+	895.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148941)	promoter-TSS (NM_148941)	91.0	NM_148941	83603.0	Mm.83949	NM_148941	ENSMUSG00000032262	Elovl4	-	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	protein-coding	4.04332223973508	4.18122700762738	4.62308537664545	4.55818112917188	4.2118294786262	4.16832682985846	4.17393001651408	3.98831968748106	-0.596386296284618	0.15933238101943	0.446799808871371
Merged-chr2-28205585-4	chr2	28205503	28205703	+	920.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019498)	promoter-TSS (NM_019498)	-86.0	NM_001038612	56177.0	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	4.28235674217289	4.62924400928906	4.18536380682468	4.58726774371879	4.74678790173881	4.40950114748389	4.35544906093387	4.53808555059599	0.18921053577709	0.629629280475087	0.842339368939137
Merged-chr2-164943077-4	chr2	164942983	164943183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5136.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	8.3410406061183	8.21978214698312	8.11639394336012	8.10351714614981	8.1719108417567	8.10194811614971	8.28212048877845	8.17902013578212	-0.0114495591205725	0.941913537467035	0.97900855236947
Merged-chr17-5814048-4	chr17	5813947	5814147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14557.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	6.79552626072516	6.38376583682868	6.87316593095423	6.87349338917296	6.36793065222672	6.27224100021794	6.01522982239974	6.42862679687469	-0.682036040691535	0.00401054816486462	0.0401500432949225
Merged-chr2-50786605-4	chr2	50786506	50786706	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-123078.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	5.11412776787286	5.24031926599188	4.97848391856708	4.55208152981806	5.47548307568762	5.43951269842848	5.1824527264149	4.50474613899518	0.413692064035361	0.289615017724977	0.60165506075493
Merged-chr1-131957922-3	chr1	131957813	131958013	+	930.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5002.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	4.3953676867555	3.80455283322335	4.19379151792414	4.60341602310934	3.81322311516034	4.02221433120572	4.0375237730208	3.95092955981386	-0.886084345848498	0.0549138396669128	0.244799410888156
Merged-chr3-145026929-3	chr3	145026824	145027024	+	892.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017474, intron 3 of 13)	intron (NM_017474, intron 3 of 13)	5852.0	NM_017474	23844.0	Mm.33483	NM_017474	ENSMUSG00000028255	Clca1	Clca2|Clca3|gob-5|gob5	chloride channel accessory 1	protein-coding	3.72721873883423	3.62060259963428	3.72777283006716	3.67096005048794	3.41882194322296	3.39799055571227	3.39974288300717	3.46814364545186	-0.891544256469816	0.0707691186271136	0.28523108577079
Merged-chr11-87448895-4	chr11	87448782	87448982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	21291.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	6.37686765253447	6.99888450971626	6.62373254868711	6.18155168598035	6.27274806635827	6.31833469655704	6.21255343468188	6.55806859011754	-0.339122186734639	0.200842519107724	0.502982537033591
Merged-chr10-40138187-4	chr10	40138140	40138340	+	819.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	4014.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	4.00486561120638	3.62170266600934	4.13436433109829	4.24069685962049	3.88098592901719	3.75982435567488	3.79490977870746	3.63987369315231	-0.716697348319674	0.133440618550182	0.406762546302092
Merged-chr15-79927839-4	chr15	79927746	79927946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144811, intron 2 of 6)	CpG	4800.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	5.86594046704929	6.03668707842659	5.95534308520454	5.95819054624462	5.65069105393122	5.79146720242372	5.61381989867001	5.76784038898201	-0.412833513596452	0.093887175438233	0.335232650049258
Merged-chr14-14619610-2	chr14	14619496	14619696	+	707.375	f0_balb.idr|f1_balb.idr	Intergenic	RLTR45|LTR|ERVK	-83429.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	3.61630577202611	3.74488382961913	3.47403489995089	3.29307731078223	3.03139661213146	3.30090121308148	3.05084574940104	3.18872384021377	-1.55510436363593	0.00784230312487807	0.066263923804095
Merged-chr12-17266498-4	chr12	17266427	17266627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027959)	promoter-TSS (NM_027959)	-68.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	8.30703654975052	8.28824814443523	8.01813605756403	8.34034862247068	8.24996958008669	8.19578685134286	8.52233469692152	8.1193025650122	0.0414695333421145	0.810333750071495	0.92679579587174
Merged-chr2-157447327-3	chr2	157447235	157447435	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 2 of 13)	L1M4|LINE|L1	23042.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	5.63127809752811	5.4808806768908	5.15256466455317	4.89097975853253	4.61469475042084	4.39867915832397	4.06497839196975	4.37051644594751	-1.93181984488314	3.18226694319251e-06	9.934674506557e-05
Merged-chr2-157031044-4	chr2	157030947	157031147	+	741.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 7 of 14)	intron (NM_001164663, intron 7 of 14)	-23972.0	NM_025853	66934.0	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	3.76245159081701	3.69236687391643	3.49923800611218	3.31725587096707	3.4748827499173	3.88364070240179	3.54248715263047	3.60922433909076	0.199092233358419	0.694782092316124	0.876112008591588
Merged-chr6-82777066-4	chr6	82776968	82777168	+	846.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2614.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	3.95569811775307	3.7107708426532	3.81196183528578	3.6493624181463	3.97801860555323	3.82504746823644	3.51670460723929	4.04151615866668	0.236232371488985	0.615529275530717	0.834477192020031
Merged-chr3-90472424-4	chr3	90472323	90472523	+	862.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-3778.0	NM_026374	67781.0	Mm.227258	NM_026374	ENSMUSG00000001016	Ilf2	6230405A16Rik|TEG-267|Tex261|Tex267	interleukin enhancer binding factor 2	protein-coding	4.25838437301935	4.34074666610424	3.89485632252253	4.41371262457347	4.20683618734347	4.29199635684505	4.86415080560384	3.95118002703824	0.296401349658509	0.519488738575894	0.780115380558525
Merged-chr8-95067730-4	chr8	95067600	95067800	+	819.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042715, intron 7 of 17)	intron (NM_001042715, intron 7 of 17)	12597.0	NM_001042715	330830.0	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	3.70941845841862	3.7865350879442	3.59929275452512	3.47497316259472	3.86312507062184	3.77403887749016	3.79565740154938	3.90382924176224	0.600664030704182	0.188626669559338	0.487341477770022
Merged-chr18-24121728-7	chr18	24121615	24121815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172625, exon 1 of 5)	exon (NM_172625, exon 1 of 5)	104.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	6.01178339873294	6.23303097673897	6.49855505085304	5.62380800577486	6.21922886880175	6.52575163572133	6.30065033114055	6.27449546274352	0.330766766300509	0.232032914581712	0.541621692185733
Merged-chr4-128707616-4	chr4	128707521	128707721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 2 of 14)	intron (NM_018774, intron 2 of 14)	18883.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	5.61117823724025	5.86638821476596	5.86028108103165	5.69812173162342	5.7788206965419	6.05599675260999	5.55644857818141	5.63530127373072	0.0133007826951946	0.960123773885523	0.985786719288545
Merged-chr17-37492157-4	chr17	37492061	37492261	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146328)	promoter-TSS (NM_146328)	-307.0	NM_146328	258325.0	Mm.484339	NM_146328	ENSMUSG00000090894	Olfr110	MOR249-2	olfactory receptor 110	protein-coding	5.35632885272221	5.13717163296788	5.64072937913276	5.49108352104581	5.3450208297503	5.13170796215054	5.24138163332233	5.13319819018538	-0.357218447392846	0.23346654507656	0.543123010560797
Merged-chr8-82874359-4	chr8	82874247	82874447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	ORR1D2|LTR|ERVL-MaLR	10991.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	5.98970272143264	5.66568851960601	6.32603692268189	6.06488389766968	5.57404197720567	6.03144751070491	6.02222556809465	5.67316121993349	-0.316757740906476	0.258087161971361	0.569939468890524
Merged-chr7-43464957-2	chr7	43464857	43465057	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001290316, exon 3 of 10)	exon (NM_001290316, exon 3 of 10)	1724.0	NM_001290316	75690.0	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	3.4320660634557	3.29953341885165	3.53153413920697	3.29653766017121	2.98310045412889	3.19046127283409	3.13482246019111	3.37807940599293	-0.812377971173263	0.147119326650655	0.42788514025699
Merged-chr16-33836808-4	chr16	33836707	33836907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	7142.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	6.23815072872713	5.64153822211332	5.50030713197739	6.21175653011298	5.2122570216506	5.58780940668288	5.47269172566673	5.71305941421511	-0.74381248780075	0.0177712178927385	0.11815220608885
Merged-chr6-32184741-4	chr6	32184628	32184828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 22 of 31)	intron (NM_175750, intron 22 of 31)	134440.0	NM_029587	76382.0	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	7.87453285682206	7.6294570295138	7.89703888448368	8.19557513688784	7.65770709231217	7.42955308523085	7.72616626386491	7.47137832647084	-0.452068183344427	0.0211377552532271	0.132808927071412
Merged-chr1-192770682-4	chr1	192770601	192770801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 1 of 11)	CpG	518.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	6.34427003325692	6.45269510363882	6.24767195780719	6.7061853798541	6.6913259407428	6.4252067518963	6.59661204471767	6.61063445164879	0.175076685516642	0.441977911950727	0.728813816856128
Merged-chr13-42976312-4	chr13	42976222	42976422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005740, intron 2 of 12)	MIR|SINE|MIR	110075.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	5.71601126131206	5.90698863491121	5.98180546104046	5.98183239653462	5.55149926201601	5.52582935030548	5.5040972675772	5.40951837238683	-0.683148018638393	0.00848462591753772	0.0700124261748686
Merged-chr1-60913344-6	chr1	60913227	60913427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009843, exon 3 of 4)	exon (NM_009843, exon 3 of 4)	4302.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	5.19903688538366	4.75023009091466	5.0067615820857	4.9434593831901	5.05347701581961	5.11084812436623	5.4863817339158	4.81684099768353	0.305746066054458	0.36247346648467	0.667662936907391
Merged-chr7-128133847-4	chr7	128133751	128133951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021334, intron 8 of 29)	intron (NM_021334, intron 8 of 29)	4283.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	7.07525534541223	7.03335684601551	7.07648681005658	6.93118856732349	6.88365253996297	6.69558686360352	6.85467622169205	6.88470055305995	-0.261825284679004	0.171406841125247	0.464641920346332
Merged-chr11-101119982-4	chr11	101119889	101120089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134024)	promoter-TSS (NM_134024)	-142.0	NM_134024	103733.0	Mm.479145	NM_134024	ENSMUSG00000035198	Tubg1	1500010O08Rik|AI451582|AI503389|Tubg	tubulin, gamma 1	protein-coding	8.32535994290885	8.41985105163501	7.88505744439666	8.05428847378414	8.15949374733422	8.33384843879041	7.8009506598355	7.96032714210979	-0.1378726816809	0.489184344914055	0.761620931360531
Merged-chr12-75721159-4	chr12	75721057	75721257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030750, intron 2 of 2)	intron (NM_030750, intron 2 of 2)	14572.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	6.82303597994817	6.79471303080906	6.86208562531103	7.09646574671655	6.47572828160932	5.85924792028984	6.04547756159856	5.73098135611242	-1.2113292327673	3.89622658811226e-06	0.000118974479757719
Merged-chr2-69135756-4	chr2	69135654	69135854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181547)	promoter-TSS (NM_181547)	-46.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	5.63512343679175	5.88973976719307	5.66328604190825	5.76750782314448	5.8332847478953	5.81345925038441	6.44972768313579	5.48704050728675	0.321823240104591	0.281921254935068	0.594029802150557
Merged-chr12-8947476-2	chr12	8947376	8947576	+	813.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010770)	promoter-TSS (NM_010770)	-453.0	NM_010770	17182.0	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	2.81641450730849	2.80526408701605	3.01211615906722	3.13410685568952	3.24571138054514	3.05760232483232	3.11550429254556	3.01063612385473	0.619876377366971	0.306111679014037	0.618593623499989
Merged-chr17-24007648-4	chr17	24007577	24007777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9577.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	7.95801182709653	8.07722108624751	8.09872391070511	7.97022597088198	7.96150117028512	8.12972364647972	8.16232005686007	7.86698766164419	0.0102045169858465	0.950219810262676	0.982218805887075
Merged-chr4-108318851-4	chr4	108318759	108318959	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9293.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	5.21142627892064	4.82540066345265	5.18156549639402	5.26195594563365	5.21275152025008	5.22478453223583	5.02613155997249	5.11423372175101	0.020111531772969	0.948338688014192	0.981388084353081
Merged-chr7-97798266-4	chr7	97798168	97798368	+	959.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357364, intron 1 of 14)	L2c|LINE|L2	9727.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	4.95489554903761	4.93384673295516	4.9557238114593	5.15022939628358	4.94529249630987	4.55133771026395	4.75254332679895	4.80993839623532	-0.461101715350931	0.167113157976345	0.458584488837368
Merged-chr7-98357429-4	chr7	98357324	98357524	+	953.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168541, intron 2 of 3)	intron (NM_001168541, intron 2 of 3)	3864.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	5.96171859065243	5.61812055653997	6.15033559059913	6.31882874489744	5.30703489945739	4.98073492357109	5.63844749516053	5.13336738309726	-1.26958308984264	6.0077919883567e-05	0.00132229012349796
Merged-chr6-108625097-4	chr6	108624995	108625195	+	801.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104577, intron 1 of 6)	intron (NR_104577, intron 1 of 6)	-1928.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	4.19211869919655	4.15805100952559	4.4634745229142	4.87465772230729	4.42935448276299	4.21439276370839	4.6970434061976	4.19026791020856	-0.168471857629546	0.701595572315549	0.879767652498371
Merged-chr1-92921021-4	chr1	92920827	92921027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_181405)	TTS (NM_181405)	10102.0	NM_181405	108657.0	Mm.200971	NM_181405	ENSMUSG00000026269	Rnpepl1	1110014H17Rik|AI894167	arginyl aminopeptidase (aminopeptidase B)-like 1	protein-coding	5.95088699876085	5.78779502725381	5.88513458164337	6.20572738382058	5.64086146589856	5.86418180438986	5.80888998773352	5.85788872444806	-0.314092954513727	0.225031756215978	0.533455517741194
Merged-chr19-43940194-4	chr19	43940085	43940285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028029)	promoter-TSS (NM_028029)	13.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	6.65608967008854	6.50028005583736	6.50136168527632	6.34720525885781	6.4488982790861	6.38112234957109	6.81251304394629	6.35647250122624	0.0254359880351786	0.910984101088939	0.966904162861598
Merged-chr12-75669650-4	chr12	75669567	75669767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028203)	promoter-TSS (NM_028203)	-130.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	9.13729301058324	9.40718864214853	9.19446312207885	9.35062046016806	9.5788056318331	9.71336063523906	9.67752915665834	9.45631799904537	0.404540395624898	0.00586795572931112	0.0533974969134028
Merged-chr6-82994274-6	chr6	82994092	82994292	+	996.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	RSINE1|SINE|B4	39279.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	3.41024334876299	3.33702690796111	3.51661882266729	3.33594907662121	3.72275689143099	3.21044678959795	3.28366526501212	3.35252109973973	0.0811058478654967	0.880516080354298	0.955181994949486
Merged-chr5-118614807-3	chr5	118614735	118614935	+	666.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	54116.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	3.63446088481643	3.39687214186491	3.17508680243318	3.21602168255825	2.9915388689961	3.08667997111892	3.16375121444153	3.23346103286948	-0.940547852447647	0.102728025269511	0.352049981254623
Merged-chr4-116709019-1	chr4	116708919	116709119	+	589.0	f0_balb.idr	promoter-TSS (NM_025962)	promoter-TSS (NM_025962)	424.0	NR_151451	68394.0	Mm.425201	NM_026714	ENSMUSG00000028689	Ccdc163	0610037D15Rik|4933430J04Rik	coiled-coil domain containing 163	protein-coding	3.38286716382134	3.43117443047488	3.3287480643328	3.29966794186531	2.98807744068819	3.38466624304414	3.20072089855003	3.27002415709982	-0.556733353829757	0.310420637444411	0.6225601620496
Merged-chr19-18670741-4	chr19	18670649	18670849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026120)	promoter-TSS (NM_026120)	-31.0	NM_026120	67383.0	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	9.1286311313369	9.22148638618775	9.23847049333467	9.21280319865609	9.04933913589653	8.97990465117052	9.37978506143499	8.77551301307364	-0.16758415623395	0.319406665298209	0.631266056622553
Merged-chr2-3327543-4	chr2	3327445	3327645	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001290370, exon 12 of 12)	3' UTR (NM_001290370, exon 12 of 12)	5083.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	5.80658489244022	6.32266175245048	5.54874505575867	6.41093905910082	6.24874717001846	5.90664238257732	6.43119284643895	6.25857645492805	0.20952411437059	0.480813750167191	0.75616089092246
Merged-chr10-59109223-3	chr10	59109144	59109344	+	765.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172788, intron 8 of 9)	ERVL-B4-int|LTR|ERVL	112603.0	NM_001024911	103080.0	Mm.346842	NM_001024910	ENSMUSG00000019917	Sept10	4921515A04Rik|9430099J10Rik|AA408298|AI874685	septin 10	protein-coding	3.48101081809733	3.73207398738218	3.58869550153087	3.22260236186951	3.37542976409656	3.59783392389925	3.41150766201535	3.53419667183517	-0.103361219546976	0.843411729311815	0.940517052807233
Merged-chr1-80340132-6	chr1	80340026	80340226	+	987.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016716, intron 1 of 15)	intron (NM_016716, intron 1 of 15)	564.0	NM_001313728	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	4.61969324009667	5.22687334270463	5.2477106886477	4.8196749563889	5.02034053030966	5.09292880212549	5.22144664898183	5.40767514574917	0.36412443686535	0.282884792771332	0.595041976860567
Merged-chr5-138085102-4	chr5	138085006	138085206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029869)	promoter-TSS (NM_029869)	22.0	NM_029869	74570.0	Mm.213114	NM_029869	ENSMUSG00000029729	Zkscan1	5930429A01Rik|9130423L19Rik|9230118B16Rik|AI646829|AI788588|C87323|KOX18|PHZ-37|ZNF139	zinc finger with KRAB and SCAN domains 1	protein-coding	5.65529242689092	5.6745311542085	5.44407581317558	5.07093186535851	5.75554484666576	5.36820830942947	5.47292041590312	5.55071992883082	0.150780441138427	0.623302481118369	0.838941930944268
Merged-chr7-97070329-2	chr7	97070229	97070429	+	659.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11422.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	2.65728908583847	2.86663077291233	2.58320727843739	2.57786499126738	2.99823149452063	3.03004448893304	2.84851967566031	3.08482303887254	1.46897918681865	0.0190305126946185	0.123716582618527
Merged-chr12-55459950-4	chr12	55459855	55460055	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32692.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	4.94377925000202	4.08844400639383	4.53939373016104	4.7532880437589	4.87931811089803	4.71535896451511	4.88850727287799	4.62029690195242	0.340070387207419	0.386297986682952	0.687552275421561
Merged-chr12-52501134-3	chr12	52501036	52501236	+	837.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14941.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	4.19177765562747	4.35226063565599	4.19240583499739	4.1768283489563	4.71813711846616	4.05855293532602	4.21954847039746	4.04199116947526	0.195257198035638	0.650513863727721	0.853294802585927
Merged-chr5-20816023-3	chr5	20815921	20816121	+	906.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 2 of 17)	intron (NM_172992, intron 2 of 17)	66103.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	3.59454245815991	4.03669073158633	3.70150389228744	3.81330970304552	3.30629866473327	3.59516292860142	3.46665023851621	3.69935300479268	-0.898906914169609	0.0756692531575929	0.297149186891159
Merged-chr12-85687005-7	chr12	85686849	85687049	+	948.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016767, exon 1 of 3)	exon (NM_016767, exon 1 of 3)	229.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	4.24487113365831	4.52815788793802	4.70715886348248	4.16969497189293	4.36838655882026	4.80537541742851	4.45540708356586	4.66829386202578	0.363154902507113	0.356436022653116	0.66287574006242
Merged-chr13-101909196-4	chr13	101909111	101909311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140994.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	8.37982645314874	8.4240155495793	8.36032112707863	8.26897620816738	8.13281661739728	8.17430139346896	8.06594858311376	7.97003371368878	-0.341279950308871	0.0266268300361589	0.15491835337124
Merged-chr14-63448055-4	chr14	63447922	63448122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177628, intron 2 of 3)	intron (NM_177628, intron 2 of 3)	11628.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	6.5922009111029	6.52885846101924	6.44116172875503	6.54391011512315	6.72101382385325	7.03958429920516	6.60638044092624	6.58865899345024	0.315403891119591	0.141276824206954	0.418178694649094
Merged-chr6-34350390-4	chr6	34350278	34350478	+	856.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3768.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	4.19492028745759	3.94431370748355	4.19555717210882	4.2365596663479	4.30244608572104	4.4487943096211	4.08523077809672	4.00051828806529	0.179520502028007	0.664615912510759	0.861045413017661
Merged-chr1-155070031-3	chr1	155069927	155070127	+	652.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	13237.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	3.62112817705692	3.48653320769417	3.77292270277373	3.29076402348135	3.70951512889928	3.79317249770889	3.55302063765239	3.67192833887465	0.459663717384434	0.352995735931804	0.659906317421994
Merged-chr11-70466872-4	chr11	70466833	70467033	+	941.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001348337)	TTS (NM_001348337)	-6949.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	3.39638397804692	4.08490229056519	4.00536064426022	4.18396509401513	4.13176661420852	3.97156552713611	4.43188951750362	4.00297259346575	0.491028450009785	0.334952271355881	0.64529103101308
Merged-chr9-58804411-3	chr9	58804352	58804552	+	958.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-19060.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	3.70354809425594	3.61529503485843	3.565266570112	2.75452031266008	3.28693595629671	3.28332078990035	3.15678546247548	3.16625730687909	-0.839686524066952	0.193185052975648	0.49338783228395
Merged-chr3-9005706-4	chr3	9005598	9005798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025263)	promoter-TSS (NM_001025263)	-975.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	8.1921407161587	8.24551816905714	8.35152745820024	8.52668430525596	8.16704176294538	8.06593897623803	8.23048219864863	8.06155433966359	-0.265272742854522	0.105809573336532	0.358319170219713
Merged-chr14-103013330-4	chr14	103013232	103013432	+	825.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	20471.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	4.4573858388827	4.95438478855746	4.27560720153943	3.86060941215921	4.81734913975989	4.54652895566819	4.51909749222338	4.27300150304852	0.246340920223713	0.590988870808564	0.821411686140442
Merged-chr11-54146254-3	chr11	54146159	54146359	+	928.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45335.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	3.86355446606709	4.01002214906536	4.10383987734989	4.23155436074002	3.79464350516522	4.18313989902359	3.62195561462499	3.91348728408227	-0.492631621022445	0.282353928176304	0.594517682403819
Merged-chr8-83955515-4	chr8	83955409	83955609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024184)	promoter-TSS (NM_024184)	-185.0	NM_024184	66929.0	Mm.29680	NM_024184	ENSMUSG00000005470	Asf1b	1700003K02Rik|AA409591	anti-silencing function 1B histone chaperone	protein-coding	9.21191616251875	9.32057031123474	9.06735214701765	9.11314207039309	9.24568952112175	9.46248715315778	9.26731880391454	9.00573639635627	0.0906678653591674	0.567070010526812	0.808122532096819
Merged-chr3-81057924-4	chr3	81057814	81058014	+	977.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	MT2A|LTR|ERVL	21498.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	5.6871957777316	5.65360177670739	5.41183399935547	5.63031365659274	6.07401536622852	5.73287688703048	5.63442464580523	5.20861636964399	0.185604754198544	0.539437981943042	0.792188835460087
Merged-chr9-61965728-4	chr9	61965653	61965853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 5 of 7)	intron (NM_028748, intron 5 of 7)	-18954.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	6.40731628149646	6.24482462424403	6.64465476865824	6.39421018543206	6.37186823359851	6.54901340229932	6.37564572581603	6.02259747863359	-0.12337756406697	0.600361355486104	0.826767290075753
Merged-chr3-9038528-4	chr3	9038427	9038627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23437.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	6.43713212660755	6.2727577751592	6.12501531897391	6.24030903457001	6.39004945374173	6.56190064939034	7.03006070695422	6.6555125551155	0.59315928291112	0.0131423532788515	0.0957089793365428
Merged-chr14-77854108-4	chr14	77854020	77854220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025384, intron 2 of 5)	intron (NM_025384, intron 2 of 5)	20797.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	5.47224848696135	5.32999450234675	6.31871010861645	6.18488817577565	5.71633569436701	5.65238553660446	5.64391798222479	5.8862253266584	-0.287481159980446	0.379990206842841	0.682461721156303
Merged-chr9-13442477-3	chr9	13442386	13442586	+	814.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11125.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	3.24649187204443	3.46559294277989	3.13081492986734	3.52801606553684	3.09609193118234	3.17816895046578	2.9941954662781	2.78549617904542	-1.34312319724964	0.0305594984152529	0.169302190045087
Merged-chr3-40949694-4	chr3	40949579	40949779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040399)	promoter-TSS (NM_001040399)	-952.0	NM_001040399	214048.0	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	9.09002503312467	9.02190588580975	9.21479116583957	9.11059842747809	9.0630131814453	9.07138057877775	9.34825403539289	8.82818908107656	-0.0239968058267815	0.882007526328605	0.955528863141706
Merged-chr8-66346140-4	chr8	66346039	66346239	+	983.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 4 of 7)	Lx5|LINE|L1	-40162.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	4.9799773485938	4.81848014616001	4.71934205816485	5.19300265181851	4.73245187274295	4.93590359509346	4.88788537705479	5.16506977007772	-0.0499345557386723	0.884385607968052	0.956563630962721
Merged-chr7-35396332-3	chr7	35396242	35396442	+	658.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028120)	promoter-TSS (NM_028120)	425.0	NM_178643	101831.0	Mm.389855	NM_178643	ENSMUSG00000030493	Faap24	AW124591|AW538696|C230052I12Rik	Fanconi anemia core complex associated protein 24	protein-coding	3.81243940586345	3.52555843771044	3.90745898187701	3.55697921390756	3.84033366849226	3.77515546414206	3.64254050620566	3.85875852842565	0.256027920389706	0.58522669535479	0.818041249764729
Merged-chr13-56748042-1	chr13	56747942	56748142	+	611.0	f0_balb.idr	Intergenic	L2c|LINE|L2	44374.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	2.95211223998452	2.79066606405501	2.78131512305821	2.93832575002699	2.55150144995442	2.45319818349104	2.57676737969456	2.83948581493123	-1.30723200838137	0.0614727632841366	0.262355787132843
Merged-chr1-55511733-4	chr1	55511632	55511832	+	913.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	105786.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	4.11185659635939	3.89745665803588	3.4243924334852	3.65359423548698	4.69632156479394	3.99115938223462	4.25937043429297	3.75203973993101	1.14389953770392	0.0286306080721215	0.1624857189597
Merged-chr11-68475846-4	chr11	68475748	68475948	+	985.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 3 of 18)	intron (NM_177320, intron 3 of 18)	-27171.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	5.45038373298704	5.62939298601351	5.31084210924834	4.99351421248889	5.21404954151286	5.39324296835997	5.22398319383207	4.96928524533359	-0.266827329330624	0.409792350893494	0.70525942551561
Merged-chr18-36720110-4	chr18	36719997	36720197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6718.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	7.21367531670295	6.95766149283421	7.49611934731027	7.32711033903828	6.7509966000128	6.86466374457951	6.65227175815025	6.63265439908328	-0.743460221094956	0.000381500204001961	0.00618701367524621
Merged-chr14-14971251-4	chr14	14971159	14971359	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195229, intron 29 of 34)	intron (NM_001195229, intron 29 of 34)	150444.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	6.1915267757566	6.38063728130602	6.42168800653349	6.41415901117175	5.2866260635743	5.32443677467307	5.46284493435954	5.13265485012994	-1.73181186408617	3.33779645196967e-11	2.75936136648953e-09
Merged-chr1-131613536-4	chr1	131613456	131613656	+	693.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14442.0	NM_011924	26361.0	Mm.89986	NM_011924	ENSMUSG00000026432	Avpr1b	AVPR3|V3/V1b|VIBR|VPR3	arginine vasopressin receptor 1B	protein-coding	3.78645497253522	3.92574675988902	3.72841286930852	3.95791786476406	4.26835647795566	4.21678977618613	4.24164886071931	3.99589514453285	0.853687320218418	0.0448109420394007	0.216302593477723
Merged-chr8-123805989-3	chr8	123805882	123806082	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009003)	promoter-TSS (NM_009003)	-14.0	NM_009003	19341.0	Mm.9221	NM_009003	ENSMUSG00000019478	Rab4a	AI848268|Rab4	RAB4A, member RAS oncogene family	protein-coding	5.5518575686883	4.99056728131932	5.18059290447269	5.07706766033795	3.64140002194517	3.73809526538602	3.59057261682946	3.6790052037868	-4.46203902152276	6.76398747745927e-14	9.13574695745869e-12
Merged-chr2-28242318-3	chr2	28242214	28242414	+	733.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36625.0	NM_019498	56177.0	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	3.68972905933682	3.54441393346803	3.83052301070083	3.39277369516652	3.38923030133566	3.59200514043703	3.72231334093217	3.35176225799239	-0.308256491132749	0.549599794005747	0.798066561323089
Merged-chr11-121451903-4	chr11	121451799	121451999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029878)	promoter-TSS (NM_029878)	-50.0	NM_029878	108903.0	Mm.23686	NM_029878	ENSMUSG00000039230	Tbcd	2310057L06Rik|A030005L14Rik|mKIAA0988	tubulin-specific chaperone d	protein-coding	6.71911951234954	7.05736938895838	6.42151506344908	6.5027544562073	6.9258462715852	7.00927673358699	6.59451034365805	6.71551618127832	0.180169717785528	0.44804727541385	0.73332468018769
Merged-chr2-154436763-4	chr2	154436648	154436848	+	971.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172860, intron 1 of 10)	CpG	264.0	NM_009823	12396.0	Mm.29914	NM_009823	ENSMUSG00000038533	Cbfa2t2	A430091M07|C330013D05Rik|Cbfa2t2h|MTGR1	core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	protein-coding	4.70405987984365	4.29690938380084	5.24329704323275	4.89549108482322	4.8534894212259	4.96221859652519	5.07283877688131	5.21191974616809	0.394965803741505	0.294055701870736	0.606446191202461
Merged-chr7-25251660-6	chr7	25251605	25251805	+	838.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010155)	promoter-TSS (NM_010155)	-947.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	3.40908740047791	3.07309733157907	3.1645652763047	3.48155677192769	3.43007635467572	3.46682505203506	3.33986971328963	3.78974868003452	0.722937653035052	0.192523640057986	0.492157893412656
Merged-chr17-29717034-4	chr17	29716935	29717135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163741)	promoter-TSS (NM_001163741)	-18.0	NM_001163741	68597.0	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding	6.33855070339471	6.49633359994554	6.05148997451535	6.04762245107595	6.14048636029658	6.01869289203184	6.02058945304595	5.95779696180324	-0.307719771414275	0.213173503597108	0.518414596075662
Merged-chr15-73185372-4	chr15	73185233	73185433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153178)	promoter-TSS (NM_153178)	-386.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	6.73411705471799	6.74073330406078	6.48308797652006	6.50402780941683	6.56127233855896	6.82260360817151	6.70101547520369	6.67208071271841	0.102593573151829	0.624574544874824	0.839547496648358
Merged-chr16-17409238-4	chr16	17409137	17409337	+	883.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023348, intron 1 of 4)	intron (NM_023348, intron 1 of 4)	-2923.0	NM_001001983	224020.0	Mm.5718	NM_001001983	ENSMUSG00000041720	Pi4ka	Pik4ca	phosphatidylinositol 4-kinase alpha	protein-coding	4.32539456425788	4.75811039388152	4.59349245797328	4.20606643705942	4.23452998880852	3.80300930661488	4.21908188028473	3.80967156806777	-1.09669039764857	0.0165177749253397	0.112347701998161
Merged-chr1-67398202-4	chr1	67398111	67398311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1a|LTR|Gypsy	275184.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	6.90433277018841	6.43998849030784	6.86727901251811	6.97464912708057	6.5167594364423	6.73745068736185	6.62215792059366	6.39759481842848	-0.353772231886507	0.117388579230411	0.378921667091806
Merged-chr3-9608539-4	chr3	9608445	9608645	+	877.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 1 of 8)	intron (NM_133218, intron 1 of 8)	1540.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	4.29677993799454	4.12018033492546	4.1107260839744	4.13069021541617	4.54245001974101	4.28571900152656	4.32045110341027	4.3374085265938	0.538930748336412	0.161000018348965	0.449492853738419
Merged-chr12-33132068-4	chr12	33131928	33132128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015602, intron 4 of 5)	intron (NR_015602, intron 4 of 5)	15558.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	5.51110865303954	5.03968799677601	5.24794734271588	5.35153638319091	5.72729250517312	5.28894797301619	5.51029354536084	5.5600124414304	0.42420257716612	0.148400930720352	0.430130539643714
Merged-chr7-133124298-4	chr7	133124212	133124412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009980)	promoter-TSS (NM_009980)	-829.0	NM_009980	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	7.40297084276232	7.74744202888681	7.51327560112328	7.37061604896655	7.97469660271444	7.82562779667904	8.09708683906148	7.63436810630615	0.501895468596807	0.00850565782083917	0.0701290649866224
Merged-chr5-43841691-9	chr5	43841644	43841844	+	950.796326	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009763, intron 8 of 8)	intron (NM_009763, intron 8 of 8)	22851.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	4.50179505358905	4.23070316470165	5.11762743816686	4.79909807577131	4.91098164029288	4.63583657913668	5.00355365327326	4.99398653425313	0.387891624985829	0.317596467868908	0.629525367799507
Merged-chr11-54956082-4	chr11	54955976	54956176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001199275, exon 2 of 19)	5' UTR (NM_001199275, exon 2 of 19)	6864.0	NM_021327	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	7.3855320791598	7.77628982191219	7.52943064933298	7.14508529562207	7.49073320745577	7.60363291492771	7.43735804942648	7.37156624424604	0.00865464442406851	0.966253433008056	0.988061043386973
Merged-chr17-33951483-4	chr17	33951341	33951541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019420)	promoter-TSS (NM_019420)	47.0	NM_019420	54218.0	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	6.43164481891127	6.34022185343586	6.54182085923385	6.42906948276728	5.73588551214677	6.07055587378504	5.95754822937445	6.13635055676488	-0.71187478556879	0.00244686936898162	0.0273158272921491
Merged-chr6-114920781-3	chr6	114920683	114920883	+	824.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	1038.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	3.6988766305612	3.59108885471976	3.91689498417255	3.48476792376738	3.47851814166599	3.29304005830845	3.23879165063074	3.37524042136452	-1.08126424565881	0.0432064696378018	0.211540247274254
Merged-chr9-66620932-4	chr9	66620834	66621034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27819.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	5.77704089664486	6.24111875874485	5.54221159431662	5.30387134982259	5.88410401419713	5.82847693715437	5.48548055958958	5.74981780109694	-0.014911379710681	0.962619477423102	0.98666971636857
Merged-chr17-56350872-4	chr17	56350778	56350978	+	888.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172132, intron 1 of 22)	intron (NM_172132, intron 1 of 22)	24828.0	NM_001357909	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	4.34363978922168	4.45410954463374	4.25073707709601	4.12192841339016	4.64471898840346	4.42725831024118	4.27953509286867	4.82325488884368	0.636143329766881	0.10068750764499	0.348344323255697
Merged-chr6-24516447-2	chr6	24516347	24516547	+	873.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1380.0	NM_172535	214704.0	Mm.61131	NM_172535	ENSMUSG00000046192	Iqub	4932408B21Rik|Trs4	IQ motif and ubiquitin domain containing	protein-coding	3.21521010126418	3.10703134609621	3.1568898002766	3.30338396551705	3.35501791589352	3.13868705477531	3.14589980852509	3.27001193438907	0.118019802814332	0.82884679827987	0.934301785648316
Merged-chr1-173913064-4	chr1	173912947	173913147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301745)	promoter-TSS (NM_001301745)	-1.0	NM_001033450	381308.0	Mm.490248	NM_001033450	ENSMUSG00000026536	Ifi211	A730048F03|Ifi205b|Mnda|ifi-205-B	interferon activated gene 211	protein-coding	7.5459416227499	7.33331855443889	7.40467436899561	7.45763940778034	7.00709926275601	6.84755143300392	7.05996092540003	6.97698933467405	-0.625221238633218	0.000624705841414582	0.00921955983538224
Merged-chr3-89214883-1	chr3	89214783	89214983	+	645.0	f0_balb.idr	promoter-TSS (NM_013691)	promoter-TSS (NM_013691)	-297.0	NM_013691	21827.0	Mm.2114	NM_013691	ENSMUSG00000028047	Thbs3	TSP3|Thbs-3	thrombospondin 3	protein-coding	3.79914941842093	3.64834857826568	3.54050989307255	3.56071853107166	3.80719991207154	3.53465386061925	3.63595387077576	3.70009511510709	0.138569595127879	0.769737024694835	0.909839341090846
Merged-chr5-118465117-4	chr5	118465026	118465226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95593.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	5.4573013227344	5.5825741089614	5.12669084224859	5.51606931097087	5.04012509287052	5.19696581949757	5.16836377462523	5.22244683390806	-0.525767230138144	0.0768676284586647	0.299715677956916
Merged-chr5-53809632-4	chr5	53809532	53809732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144517)	promoter-TSS (NM_144517)	5.0	NM_144517	67249.0	Mm.28823	NM_144517	ENSMUSG00000039178	Tbc1d19	2810453K03Rik	TBC1 domain family, member 19	protein-coding	5.53410594758922	5.49869094315474	5.56346206419124	5.74176467570889	5.65617798050294	5.82044930196083	6.15959413481329	5.6926392922325	0.401342231390087	0.143540601943822	0.4218968702052
Merged-chr10-57722571-4	chr10	57722478	57722678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	-62345.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	6.39709197446095	6.31199448255971	6.30604707753842	6.59212022642752	6.58029683534821	6.29919289963725	6.56157923303422	6.54414388024952	0.12502315079314	0.572933810033349	0.811527017120985
Merged-chr6-52586799-4	chr6	52586693	52586893	+	829.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145567, intron 4 of 7)	B1F|SINE|Alu	53507.0	NM_145567	58875.0	Mm.286458	NM_145567	ENSMUSG00000029776	Hibadh	6430402H10Rik|AI265272	3-hydroxyisobutyrate dehydrogenase	protein-coding	3.96907866581428	4.18158918586299	3.91618329832469	4.05414906908464	4.21150883589773	4.28914098769054	4.27256877117062	4.11550431047361	0.471367435023972	0.24171239423958	0.5522338792996
Merged-chr11-117830617-4	chr11	117830526	117830726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027827, intron 2 of 10)	intron (NM_027827, intron 2 of 10)	-4612.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	6.84564151808553	7.18690226390932	6.83272068941471	6.75267931360467	7.31725727694217	7.11822219715896	7.0530420327937	6.66120819879589	0.213018740480359	0.348489641679277	0.656238106962862
Merged-chr15-83134916-4	chr15	83134804	83135004	+	968.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 3 of 7)	intron (NM_001347082, intron 3 of 7)	-12103.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	4.96167380923464	4.8788743283762	5.4951996661892	5.67340877192988	4.93098813820388	5.10333158645316	5.63333543876296	5.35652589583826	-0.0545854132125476	0.882432610993467	0.95575354370667
Merged-chr13-56634525-4	chr13	56634437	56634637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 12 of 16)	intron (NR_155548, intron 12 of 16)	24951.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	5.07438147060629	5.38017419264281	5.14240968840961	5.2916752738522	4.97791254272825	5.2835837732706	5.01607641005631	5.29260544767202	-0.174763594175787	0.567612318419677	0.808331754798167
Merged-chr7-80647574-4	chr7	80647489	80647689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173863, intron 2 of 14)	intron (NM_173863, intron 2 of 14)	11572.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	6.79177467881103	6.23985634823896	6.76504807876031	6.84113232464844	6.56014112482154	6.75989591794366	6.82532171382933	6.82886108759039	0.0809146710469499	0.725541961041992	0.890921883682774
Merged-chr2-153081347-4	chr2	153081235	153081435	+	849.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145536, exon 9 of 9)	3' UTR (NM_145536, exon 9 of 9)	15380.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	3.70458971587911	3.81967920714369	3.80642007732597	3.61695894503574	3.83392796797671	3.52548853825581	3.6902907064991	3.85187960791914	0.015741107973793	0.973056791104262	0.990282195228149
Merged-chr1-45826358-4	chr1	45826242	45826442	+	863.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31176.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	4.26559138416388	4.21472848321894	4.26623012962945	4.79769388764553	4.54238064361614	4.19083965481441	4.15255880439491	4.4765834935169	-0.169396154648325	0.692271142131399	0.874836531305297
Merged-chr13-103974180-3	chr13	103974085	103974285	+	679.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53599.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	4.01333429770089	3.99557999448299	4.45772063999845	4.05642391833103	4.08958126396883	4.62559107032918	4.14555507427357	4.20753710256174	0.346839553423399	0.417777989650181	0.711469226750822
Merged-chr9-95689169-1	chr9	95689069	95689269	+	739.0	f0_balb.idr	intron (NM_029620, intron 6 of 8)	intron (NM_029620, intron 6 of 8)	51541.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	2.8184626401213	2.86343354417596	3.18503171433592	3.26212689464448	2.95497070737018	3.12350157976444	3.00415451000004	3.01329378844077	-0.13678378628909	0.823533594880299	0.932313798231142
Merged-chr13-116964226-3	chr13	116964125	116964325	+	620.972229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	61291.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	2.95531301032937	2.67110479202738	2.72886386308011	2.91235948238624	3.67436589460279	3.43814225659747	3.35763751097187	3.2645600508076	2.43702662141691	0.000214487654054247	0.00385823015616054
Merged-chr7-19933693-4	chr7	19933574	19933774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12531.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	6.29112941782317	6.06364934745241	6.66558392235642	6.47337648077576	6.17268537820178	6.22048418713496	6.48339488202937	6.46376312599794	-0.0826150347128937	0.735184377681005	0.895431262597044
Merged-chr9-122923154-4	chr9	122923050	122923250	+	961.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009544)	promoter-TSS (NM_009544)	72.0	NM_009544	22646.0	Mm.290595	NM_009544	ENSMUSG00000057895	Zfp105	AW557864	zinc finger protein 105	protein-coding	4.59246412256337	4.73982595186397	4.67661750966316	4.81472346925276	4.48605568635944	4.89031661660357	4.97182815401961	5.02399906689347	0.272791730779484	0.439999354305267	0.727513160354355
Merged-chr6-149355979-2	chr6	149355879	149356079	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR1F_Mm|LTR|ERVK	46565.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	1.72625725274603	1.6968524993468	1.72636694817273	1.6789184862741	2.01334842452779	2.20730144118773	2.21430706157429	2.09927438339351	3.73181682312895	0.000335895741650564	0.00556793735327096
Merged-chr1-51501497-4	chr1	51501394	51501594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23095.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	6.37874483972799	6.14096281171627	6.52744462470708	6.9070815726154	6.06472231870898	5.88957823764259	6.09911514631548	6.34002827364769	-0.641443911798737	0.0167996931273821	0.113624606339218
Merged-chr8-85082286-4	chr8	85082178	85082378	+	935.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010764)	promoter-TSS (NM_010764)	-991.0	NM_010764	17159.0	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	4.88376787393207	4.41697013766703	4.28179072232283	4.53901625802113	4.58171132933005	4.41007266874879	4.26344628994594	4.37204242907833	-0.292566255917256	0.454524207016758	0.738356768634224
Merged-chr16-4469780-3	chr16	4469678	4469878	+	839.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49280.0	NM_009624	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	3.31791287894147	3.7026145652436	3.43755369978047	3.51165682290614	3.53494950691605	3.60808879485952	3.58407448805287	3.37748778290643	0.0829128393164907	0.868886468600243	0.950884643021044
Merged-chr19-12440461-4	chr19	12440335	12440535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12530.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	6.92148926930903	6.95130376662836	7.02187603007376	6.76402877588261	6.82322250780749	6.91946908582414	6.84849869590008	6.66115286261279	-0.12985790384138	0.513448691530857	0.77646733267772
Merged-chr2-152847924-4	chr2	152847818	152848018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141976)	promoter-TSS (NM_001141976)	-46.0	NM_001141975	72119.0	Mm.407737	NM_028109	ENSMUSG00000027469	Tpx2	2610005B21Rik|DIL2|REPP86|p100	TPX2, microtubule-associated	protein-coding	7.868838176967	7.9389793964874	7.28531036402367	7.65100610979927	7.55378115664675	7.63171270972568	7.73678594691023	7.55306543854064	-0.119993853386031	0.54683184587715	0.796579001903773
Merged-chr17-63501337-3	chr17	63501238	63501438	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015794)	promoter-TSS (NM_015794)	-758.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	3.21619804933093	3.29345165365704	3.37977843284013	3.56792655931547	2.93973228269532	3.06950808359433	3.02058054197589	3.21493842715647	-1.27217585949628	0.0290843555267169	0.163980258305038
Merged-chr18-21725494-2	chr18	21725392	21725592	+	995.416626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-73124.0	NM_001081403	225266.0	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	4.54392770956056	4.46792603296421	4.76064310492035	4.81856887741154	3.10414065925356	3.34483728994114	3.29123554250561	3.30006011618996	-6.71140353208638	1.84864418431401e-10	1.35514566833457e-08
Merged-chr2-38209344-3	chr2	38209249	38209449	+	762.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 2 of 21)	ORR1F|LTR|ERVL-MaLR	78035.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	3.46557752573271	3.57858508050427	3.46602927938481	3.23241172500615	3.71936818853613	3.80083259888659	3.80436138617401	3.34194236313212	0.802076497873975	0.113688530507188	0.372879730576495
Merged-chr8-111338702-4	chr8	111338605	111338805	+	995.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029005)	promoter-TSS (NM_029005)	-500.0	NM_029005	74568.0	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	5.39329076001388	5.85427766626464	5.42345236054461	5.35625498011834	5.40333309368761	5.56917734332567	5.53216367609622	5.09261440504309	-0.190058817177855	0.530991696335199	0.786946322008893
Merged-chr19-4138132-4	chr19	4138043	4138243	+	935.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144532, intron 3 of 5)	MTD|LTR|ERVL-MaLR	1466.0	NM_144532	73660.0	Mm.379226	NM_144532	ENSMUSG00000024842	Cabp4	2410038D05Rik	calcium binding protein 4	protein-coding	5.11991174656078	5.15791928880527	4.60963661455814	4.5257168627476	4.6955262429393	4.61003820549405	4.58842054085957	4.52010206923584	-0.562867734399255	0.139896590135478	0.415944001221939
Merged-chr11-78080860-4	chr11	78080765	78080965	+	902.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022313)	promoter-TSS (NM_022313)	-482.0	NM_022313	57837.0	Mm.21096	NM_022313	ENSMUSG00000020832	Eral1	2610524P08Rik|9130407C09Rik|AU019798|Era|M-ERA|MERA-S|MERA-W	Era (G-protein)-like 1 (E. coli)	protein-coding	4.34278723222515	4.40112081842137	3.89596393675281	4.45088300528193	4.20519392424334	4.38351521006932	4.04608433347767	4.46074523090877	-0.0499773968753327	0.905489158712226	0.964905276183867
Merged-chr1-176813579-4	chr1	176813533	176813733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1027.0	NR_151682	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	5.61095054062599	5.17445787556827	5.53504179719524	5.4016325412976	5.71662130117894	5.4796253969778	5.42586586092716	5.29999916127181	0.115622110076851	0.690632795651427	0.874038578341713
Merged-chr6-48830495-3	chr6	48830442	48830642	+	703.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10446.0	NM_023056	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	3.29156071397048	3.22168504530456	3.29200514516235	3.28995336680036	3.06837441790913	3.40495096424172	3.03859183387291	3.29020773460294	-0.267611608558321	0.626476146446218	0.840568473888704
Merged-chr18-84646302-4	chr18	84646213	84646413	+	834.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177450, intron 1 of 11)	intron (NM_177450, intron 1 of 11)	3782.0	NM_177450	338403.0	Mm.23278	NM_177450	ENSMUSG00000056162	Cndp1	AI746433|Cn1	carnosine dipeptidase 1 (metallopeptidase M20 family)	protein-coding	4.24491411076242	4.03007753616043	3.95287327259517	4.2296990246464	4.08265810900076	4.130420035881	4.56456384510418	4.24290678422548	0.344654528349411	0.409479069534822	0.70507210627999
Merged-chr18-66475485-2	chr18	66475385	66475585	+	992.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16881.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	3.86286668417742	4.44768156705246	3.8633921574482	3.50227133474055	4.61153323825855	4.47844376145266	4.10946651620891	4.26148435799079	1.04293177287314	0.0312699607367031	0.172152876113991
Merged-chr11-59191103-4	chr11	59191007	59191207	+	936.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008193, intron 1 of 7)	intron (NM_008193, intron 1 of 7)	845.0	NM_008193	14923.0	Mm.3624	NM_008193	ENSMUSG00000020444	Guk1	AA409738|AL033299|AL033300|AV026611|Gmk|Guk-1	guanylate kinase 1	protein-coding	4.55963204051214	4.68690677133453	4.47672960657264	4.43244727285364	4.51606501871351	4.77165150925149	4.49864397264058	4.59721547755003	0.131078404419767	0.712826548530035	0.885082780938882
Merged-chr13-76018700-4	chr13	76018647	76018847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178916)	promoter-TSS (NM_178916)	-35.0	NM_001131069	218341.0	Mm.266515	NM_178916	ENSMUSG00000043190	Rfesd	AI256775|D030068K09	Rieske (Fe-S) domain containing	protein-coding	7.68844960263662	7.59569518669159	7.67252951845129	7.47425417581872	8.12983786996518	8.32132108397641	8.36129516981731	7.97998967090496	0.779856670111744	7.06098521378524e-06	0.000202088406325702
Merged-chr11-61929494-4	chr11	61929402	61929602	+	936.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019921, intron 1 of 14)	intron (NM_019921, intron 1 of 14)	755.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	5.22993884766174	5.69554976013043	4.91317587339748	5.46667668286685	5.70617655601335	4.83483930647926	5.1082650981412	4.90994246785309	-0.285489541184714	0.453087191681605	0.737250667901997
Merged-chr15-38302417-4	chr15	38302321	38302521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1710.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	5.40178345086624	5.09905231389707	5.70312671887439	5.5320706418176	5.13215726304598	5.29584700487144	5.28849056616913	5.31115747794416	-0.360050777020106	0.231933397983525	0.541542911150474
Merged-chr19-7418068-4	chr19	7417970	7418170	+	935.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175381, intron 1 of 4)	CpG	445.0	NM_175381	108899.0	Mm.386838	NM_175381	ENSMUSG00000053080	2700081O15Rik	AI255177|AI848741|AW742297	RIKEN cDNA 2700081O15 gene	protein-coding	4.62631205350567	4.9417548474926	4.41435354290143	4.46961021225677	4.72948389581278	4.54474544480731	4.52541473898951	4.6626019828586	-0.00397138180928714	0.991397588540516	0.996745793587504
Merged-chr11-88059260-4	chr11	88059160	88059360	+	918.5458369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9019.0	NM_016686	22344.0	Mm.46628	NM_016686	ENSMUSG00000018377	Vezf1	AI848691|AW046909|db1	vascular endothelial zinc finger 1	protein-coding	4.76991308407465	4.93702651447097	4.27785833223192	4.26691131267489	4.69803069847331	5.08350738407539	5.07203574611601	4.76749994499273	0.673008374983979	0.0830761499516972	0.313219835659296
Merged-chr11-110731979-3	chr11	110731761	110731961	+	982.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-236172.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	2.84362296480122	2.75223584365381	2.84396939169926	3.0844581637664	2.53587924437188	2.60402217635432	2.99926456430117	2.84256835207809	-0.654084091627132	0.341691524645109	0.650667254559615
Merged-chr7-144943499-4	chr7	144943410	144943610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3585.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	5.92349509278636	6.19056852873891	5.67552537296356	5.80562550267392	6.301070209203	5.82373761644539	6.15867207379302	5.92032769596956	0.261668411049826	0.325377989888957	0.636913344396943
Merged-chr18-7869872-4	chr18	7869759	7869959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001360956, exon 1 of 14)	5' UTR (NM_001360956, exon 1 of 14)	146.0	NM_001360956	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	4.94856636279862	4.59916422696254	4.88165315376731	4.89511992835677	4.54788318575695	4.74500841740895	4.89214572211815	4.94602586387411	-0.114751663275835	0.738574001889284	0.896839859436988
Merged-chr10-44539136-4	chr10	44538995	44539195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80347.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.06140348707983	6.38593167139882	6.21977002785064	5.73404381586413	5.98697045692327	6.25837530749789	5.80388856259823	5.94890170305425	-0.159983311563235	0.557298570942322	0.802523922820683
Merged-chr2-92055513-4	chr2	92055400	92055600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-31330.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	5.84850001653994	6.03250616034877	6.0944513322993	5.9238432357117	6.38049188905245	5.89855103395729	6.02238485515905	6.00649590318072	0.203982465314973	0.415625080475288	0.709851655704734
Merged-chr9-66375033-4	chr9	66374950	66375150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145617, intron 2 of 77)	intron (NM_145617, intron 2 of 77)	24600.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	5.31762341997809	5.65625706796527	5.41457722908312	5.62623698362524	5.90830483942835	6.04779311159897	5.5858497310105	5.52855783702456	0.442618433436333	0.118720953409644	0.38118863696383
Merged-chr5-66079541-4	chr5	66079423	66079623	+	975.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	18656.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.55308769231861	5.48312299726136	4.89447693648645	5.16463697091888	5.34444522403164	5.42523460779404	5.25559688975876	5.08153740938306	-0.0192187796908131	0.951795722662789	0.982835991693355
Merged-chr12-59012059-4	chr12	59011931	59012131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009147)	promoter-TSS (NM_009147)	-14.0	NM_001361956	20334.0	Mm.491137	NM_009147	ENSMUSG00000020986	Sec23a	Msec23|Sec23r	SEC23 homolog A, COPII coat complex component	protein-coding	9.21338602492691	9.21090364379053	9.21783516059115	9.29376098672462	9.17695599583993	9.21151061439342	9.36415076343153	9.06670312178802	-0.0334172149507603	0.812862738103996	0.927699410523094
Merged-chr3-9347072-3	chr3	9346983	9347183	+	844.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55995.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	4.75624619709597	4.29714953289687	4.13126717921248	4.39630811650952	3.59064386265933	3.99300399370843	3.79481960310323	4.22059123556857	-1.30906469208937	0.00531310141556176	0.0497410555909865
Merged-chr10-128780375-4	chr10	128780281	128780481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10529.0	NM_001164197	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	7.04153983858708	6.94679817929384	7.13620015824072	7.43315618440556	6.95383267212418	7.06521534918958	6.93257279954534	6.62552707035364	-0.360301882160712	0.0964145064924734	0.340242347924034
Merged-chr1-72429399-4	chr1	72429300	72429500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045533, intron 3 of 3)	intron (NM_001045533, intron 3 of 3)	107164.0	NM_001045533	381270.0	Mm.337023	NM_001045533	ENSMUSG00000039372	March4	BC056494|mKIAA1399	membrane-associated ring finger (C3HC4) 4	protein-coding	6.82720770163882	6.71721923168799	7.10504048571635	7.41720756153592	7.13267832119929	6.68883334543892	6.80763194920617	6.57574246906784	-0.320891805414003	0.198562404305318	0.500110034939296
Merged-chr5-99214667-4	chr5	99214570	99214770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38257.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	8.14658952157952	8.5083670080806	8.36735410412439	8.4922522450156	8.27219749506032	8.42860558419599	8.14046316188901	8.06442126736901	-0.200492563003335	0.243717231367637	0.554713292984908
Merged-chr17-80130890-4	chr17	80130787	80130987	+	966.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 1 of 6)	intron (NM_176963, intron 1 of 6)	3416.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	5.18812422179302	5.03638684090343	5.12511457547155	5.34007294096071	5.34188354316272	4.88414763468691	4.84969607168374	5.41250689291232	-0.0544167408176835	0.868601053341635	0.950762137632278
Merged-chr13-54342817-4	chr13	54342672	54342872	+	901.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28577.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	4.07721853811575	4.26020742112339	3.74109768536001	3.56156906204039	4.38570624654676	4.59332807218635	4.1995609434057	4.30219277221611	1.13572684050093	0.0120474971500541	0.0901902397605913
Merged-chr9-102521540-4	chr9	102521450	102521650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024291, intron 4 of 10)	ORR1E|LTR|ERVL-MaLR	15412.0	NM_024291	16716.0	Mm.101692	NM_024291	ENSMUSG00000035606	Ky	CD1|D9Mgc44e|ky	kyphoscoliosis peptidase	protein-coding	6.07090217055202	6.52931824445585	6.76262535299873	6.52683936850886	6.42282111550337	6.42091725604251	6.64622935727134	6.13469314618054	-0.115314192954423	0.642360855632553	0.849120718759996
Merged-chr1-48598215-1	chr1	48598115	48598315	+	576.0	f0_balb.idr	Intergenic	Intergenic	-646401.0	NR_151585	442837.0	Mm.337149	NM_001002792	ENSMUSG00000051616	C230029F24Rik	-	RIKEN cDNA C230029F24 gene	ncRNA	3.26803275681918	2.88899624473723	3.49184801382774	2.85901015716106	2.84120265016516	2.76350972799459	2.56903186016326	2.72890556303563	-1.90483119019886	0.00865264404813944	0.0711021185294986
Merged-chr12-111946881-4	chr12	111946755	111946955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2373.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	6.60141750314442	6.54460063983161	6.24575679690846	6.69424732671583	6.70742153695252	6.52198922323887	6.61445767325901	6.58224628958744	0.0983720630445431	0.652026783282202	0.854348672565858
Merged-chr3-104822610-4	chr3	104822495	104822695	+	859.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001355044)	TTS (NM_001355044)	-4032.0	NM_001163440	17454.0	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	3.76418467453675	3.94312208470195	3.92514012415891	4.25778543394255	4.03484974073127	4.04646268438526	3.75056479209055	4.10948164538224	-0.0276775930421795	0.951521473446513	0.982792981377963
Merged-chr1-36071782-2	chr1	36071682	36071882	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	3382.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	3.48101112756195	3.83664606473335	3.79708079176702	3.72161779982042	3.60060186436395	3.65458351045387	3.46931016556349	3.646869696121	-0.389914985301983	0.417671368441582	0.711417605932264
Merged-chr11-85697686-4	chr11	85697597	85697797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	22047.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	7.03116052746836	6.75870823688427	6.72598668433561	7.29479009100097	6.71748911447189	6.70875837714443	6.63017190260165	7.00357999306534	-0.304025293261877	0.186499968693653	0.484520084372783
Merged-chr11-22814117-4	chr11	22814038	22814238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45597.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	6.35955425799268	6.21384196597009	6.41180335497987	6.76372413979059	6.04824455600839	6.13179602658549	6.03725637439724	5.94935265605162	-0.651029350366824	0.00817363060581878	0.0681493326568555
Merged-chr1-62483263-4	chr1	62483160	62483360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081050, intron 20 of 22)	intron (NM_001081050, intron 20 of 22)	-220057.0	NM_001077406	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	6.01558469678614	6.46238098871119	6.13587517460693	6.46075912446477	5.15799967659522	5.56516467330636	5.38857366808759	5.80945123380307	-1.30313920231028	4.76563420472927e-06	0.000141811487064559
Merged-chr2-153198701-4	chr2	153198618	153198818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 13 of 17)	intron (NM_133847, intron 13 of 17)	26723.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	7.88174667091029	8.06644266361049	8.17269072298358	7.82173493502364	8.0980542780415	8.02300578079322	7.82269605462859	7.9496966212412	-0.0090955094205277	0.958219697584708	0.985110633982061
Merged-chr10-17660961-4	chr10	17660850	17661050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62278.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	5.66623072864288	5.7371030607031	5.95920612771785	6.32378304798288	5.84905398380618	5.47239772768058	6.18194509795344	5.95494612914424	-0.120138846006877	0.68835919703349	0.872728425878073
Merged-chr1-23433801-4	chr1	23433704	23433904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3b|LINE|CR1	-50629.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	7.85353046970533	7.9502779532447	7.94256749366087	8.07084605100616	8.04959285098825	8.00924935116336	8.10574462710047	7.90866498976261	0.0751529548554473	0.639489818487718	0.847607151813091
Merged-chr11-53809041-4	chr11	53808921	53809121	+	812.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	38548.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	3.33726172035462	3.3666744417393	3.39428595657893	3.28603220901768	3.41566699551283	3.32806689918383	3.26697972979048	3.59635605001119	0.23285373465083	0.649842374630951	0.852959309296806
Merged-chr13-94630291-4	chr13	94630191	94630391	+	980.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-158652.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	4.02889054583779	4.53128056462356	4.39152131377564	4.34052461671945	4.73968669886438	4.27160979262274	4.61596886252418	5.07166959234649	0.819511438819931	0.0432685595385567	0.211641891107403
Merged-chr5-64342354-4	chr5	64342263	64342463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 17 of 18)	intron (NM_001289514, intron 17 of 18)	112006.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	6.77448673630227	6.94565214347691	6.59251545277537	6.77496496020862	6.76915800437286	6.68451058337901	6.92526734003568	6.78501355679457	0.0188750166814056	0.925825103474344	0.972683469228049
Merged-chr5-66174727-3	chr5	66174642	66174842	+	801.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040695, intron 2 of 2)	intron (NR_040695, intron 2 of 2)	16593.0	NR_040695	73639.0	Mm.48851	NR_040695	ENSMUSG00000107014	1700126H18Rik	-	RIKEN cDNA 1700126H18 gene	ncRNA	3.69874691010722	3.66183385888382	3.5013224921966	3.91066169958332	3.09320728922663	3.17164198310877	3.25625094113272	3.26572033091123	-1.91256086359097	0.000656181290244781	0.00958275093523457
Merged-chr9-100452678-4	chr9	100452566	100452766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33807.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	6.41715007498249	6.44682587036427	6.4020182927608	6.79287546481425	5.81875021996603	5.45009882520082	5.72288882665825	5.87781904260645	-1.2466613343492	1.06440089849761e-06	3.71023465005688e-05
Merged-chr19-24284391-4	chr19	24284302	24284502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-3816.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	5.67181051974118	6.27134636850734	6.29331196088815	5.9849820078898	6.39487986700017	6.20878802149493	6.61982244760682	6.15474154665207	0.430651839517217	0.0978688839391123	0.342808389838201
Merged-chr2-49727397-4	chr2	49727299	49727499	+	729.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 12 of 25)	intron (NM_008449, intron 12 of 25)	-60287.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	3.94033733015253	3.87830219933768	3.78225710029765	4.17784863669966	4.13673302947859	4.06194507484098	3.87449856028385	4.16637950120803	0.258781082918036	0.556931387265788	0.802252160011434
Merged-chr8-84237244-4	chr8	84237145	84237345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172503)	promoter-TSS (NM_172503)	-203.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	8.74324119384556	8.97312571880467	8.58816726860688	8.5302433824815	8.77024270540604	9.01968934214896	8.89513269805713	8.6876297699018	0.16187199068007	0.343041711849589	0.651771205504203
Merged-chr9-73085926-4	chr9	73085789	73085989	+	907.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301230, intron 5 of 6)	intron (NM_001301230, intron 5 of 6)	-16509.0	NM_025890	66991.0	Mm.471745	NM_025890	ENSMUSG00000092622	Khdc3	2410004A20Rik|AI467128|FILIA|OEEP48	KH domain containing 3, subcortical maternal complex member	protein-coding	3.76350587484717	3.57285169209017	3.71416597203439	3.68064106110841	3.5537173196027	3.83285309336083	3.48029123747524	3.76182145827051	-0.0714812995976262	0.880300469042397	0.95517036814656
Merged-chr5-115272906-4	chr5	115272800	115273000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016698)	promoter-TSS (NM_016698)	-5.0	NM_001302449	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	6.65073808386121	6.75003728461302	6.35573557295721	6.36379067413632	6.97363672289197	7.11747406864383	6.58662017356549	6.94918442930957	0.549237075184413	0.0152816093574407	0.106254730140986
Merged-chr4-122849517-4	chr4	122849458	122849658	+	787.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008917, intron 5 of 8)	intron (NM_008917, intron 5 of 8)	13331.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	3.80791334692756	3.75068306050994	3.75691889219072	3.75995915567387	4.09777540381804	3.57887644520222	3.7927926630937	3.90331905662273	0.290403615544622	0.527891632922014	0.784584834242773
Merged-chr8-31150275-4	chr8	31150168	31150368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199988)	promoter-TSS (NM_001199988)	-48.0	NM_144927	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	7.64190437164734	7.40080037955816	7.562446652269	7.46720186862095	8.15441211710532	8.16748985471662	7.95163113584076	7.90307357301966	0.697835572445267	4.33593056917198e-05	0.000999116872719627
Merged-chr15-81810270-4	chr15	81810201	81810401	+	972.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153484, intron 1 of 3)	intron (NM_153484, intron 1 of 3)	-1113.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	4.9625223734605	4.89678501118394	5.40858031437191	5.03825093538812	5.09277747488053	4.86597239742019	4.97435059111628	4.99509515892929	-0.184022921339043	0.570320939520941	0.809955403437605
Merged-chr16-31918590-4	chr16	31918481	31918681	+	808.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15270.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	3.54946962255837	3.68610328449908	3.88161959796896	3.89776393442318	3.92700975975581	4.05129388208439	3.71169939747561	4.01764426467201	0.455680049060363	0.321654971806406	0.633233286881578
Merged-chr10-21608639-4	chr10	21608534	21608734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	15489.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	6.58905293045115	6.70250050473628	6.8912397889066	6.49618320560613	6.52121873575706	5.73409946551137	5.733817239438	5.70117614665565	-1.01550514821106	0.000581729222092741	0.0087172430103872
Merged-chr3-18624040-4	chr3	18623942	18624142	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143565.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	6.10241300822205	5.92965155086447	5.58895593857802	5.77992627156226	5.390818988882	5.36395958092946	5.66330559703826	5.28790838662248	-0.729782303622346	0.00978326537984955	0.0776826335297426
Merged-chr18-53090543-3	chr18	53090451	53090651	+	850.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-85741.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	3.22268617007323	3.1904419289833	3.29478399597504	3.03248217833693	3.98155851380862	3.89002526174377	3.97217948675933	4.14501929999184	2.72177513898023	3.58446732505303e-08	1.70319625987951e-06
Merged-chr3-78312917-4	chr3	78312817	78313017	+	951.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	831970.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	4.89794824560342	4.71579611852273	5.16365660251839	5.14865659433438	4.66825075265013	4.83633443128651	5.01346652984591	5.35305923377057	-0.0268831994145469	0.939671878930591	0.97824993667584
Merged-chr1-131015564-4	chr1	131015465	131015665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4280.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	6.96995873057116	7.25860843077857	6.71515842702953	6.59358729872914	6.64586896979242	6.78323581322435	6.76718406401327	6.46364441731128	-0.331332128749749	0.16204966536634	0.451131614952702
Merged-chr15-96684466-5	chr15	96684337	96684537	+	778.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15291.0	NM_001355633	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	3.62690423920318	3.47122320501881	3.20899847733388	3.23892928601977	2.89698270116094	3.19131246619651	3.42071189840988	3.20738686012506	-0.764890745755204	0.193456510130855	0.493690248402503
Merged-chr11-14449404-3	chr11	14449308	14449508	+	650.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	149817.0	NR_045918	73307.0	Mm.399291	NR_045918	ENSMUSG00000085561	1700046C09Rik	-	RIKEN cDNA 1700046C09 gene	ncRNA	3.28789022734558	2.98163503317668	3.06749862122916	2.838847608214	4.02658934869593	3.9243394834133	3.57818678231373	4.22788008614052	3.23876009605507	6.40639753721792e-09	3.54313108237478e-07
Merged-chr10-18917327-4	chr10	18917317	18917517	+	848.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72346.0	NM_022032	64058.0	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	3.52482219381065	3.57965636135649	3.72889618653242	3.60997264409438	3.61803396243255	3.25548493395395	3.33710684768761	3.7726838351093	-0.304561257748432	0.556128500001775	0.801835080198288
Merged-chr1-165211012-4	chr1	165210912	165211112	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY3-int|LTR|ERVK	-16574.0	NR_151712	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	4.85017347649057	4.73921850201461	4.56767439831183	4.45641342095137	4.11942398648308	4.03926020487799	4.82682529712058	4.4828183784884	-0.568309395240817	0.178012262241893	0.473814030892067
Merged-chr9-118655101-4	chr9	118654990	118655190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 5 of 27)	intron (NM_133721, intron 5 of 27)	48381.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.10575642839467	6.66822129151323	7.36238659900947	7.31152463268056	6.2661080560694	5.95151803242859	6.4159947527691	6.33401401853427	-1.02313329836849	0.000997305876174131	0.0134093384778899
Merged-chr8-126901292-4	chr8	126901187	126901387	+	958.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44634.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	5.18196835824138	5.1235859916727	5.0894373512476	4.7545349087365	4.76657263994037	5.23051856205773	4.51286809686093	5.42355569694658	-0.0211147054536916	0.955225402632475	0.984075265351039
Merged-chr3-21961992-4	chr3	21961906	21962106	+	927.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114646.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.52332418385168	5.03075788446768	4.52402950826789	4.24665996042252	5.18752145278259	4.94266087597505	4.70900159928108	4.68948259705736	0.621357097869136	0.11263314961694	0.371111186251176
Merged-chr1-181232470-4	chr1	181232359	181232559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20481.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	5.47971633827903	5.37498915551777	5.73528612846078	5.66366114938497	5.32726089260607	5.86081020706544	5.33593295762035	5.35877691500248	-0.159773587106748	0.587987664715427	0.819445784289058
Merged-chr2-117025802-2	chr2	117025702	117025902	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95269.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	2.5900842077377	2.54497043177042	2.6482518094178	2.26987220943996	2.46279324631306	2.27698211201647	2.39196597076752	2.25407076214007	-0.941602058708317	0.218484220845186	0.525781862908224
Merged-chr5-135369962-4	chr5	135369859	135370059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145414)	promoter-TSS (NM_145414)	6.0	NM_145414	100609.0	Mm.281189	NM_145414	ENSMUSG00000000916	Nsun5	9830109N13Rik|AI326939|Nol1r|Wbscr20|Wbscr20a	NOL1/NOP2/Sun domain family, member 5	protein-coding	5.8804771237658	5.82441981973398	5.78452212826374	5.70343238499998	6.2323636010391	6.38169860726825	5.94103443021335	5.64792454335856	0.461030593973576	0.0862262027480285	0.320128045347482
Merged-chr5-31452412-4	chr5	31452340	31452540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172993)	promoter-TSS (NM_172993)	4.0	NM_001360000	269639.0	Mm.259127	NM_172993	ENSMUSG00000062761	Zfp512	2500002M11Rik|AI450173|D230008H22|Znf512	zinc finger protein 512	protein-coding	6.99388946208311	7.27571673971987	6.98266985120673	7.05398542169775	6.88576140433928	6.81764845302644	6.75962421326035	6.72984533317675	-0.390705678237461	0.0462902441966807	0.221059596892019
Merged-chr4-108460779-4	chr4	108460661	108460861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175472, intron 2 of 30)	CpG	1335.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	6.44805844176193	6.20488038208254	6.28936687486785	6.15582498521261	6.52134058748638	6.1470512867194	6.85823922574926	6.14494438492594	0.277407190330391	0.279594550816026	0.59163031489785
Merged-chr13-70933666-3	chr13	70933589	70933789	+	783.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50741.0	NM_029873	77166.0	Mm.159859	NM_029873	ENSMUSG00000021600	8030423J24Rik	-	RIKEN cDNA 8030423J24 gene	protein-coding	3.63574433341097	3.40411633347152	3.90996980330323	3.85656418795066	3.48255254333325	3.25949497652889	3.46054392298917	3.47166297416038	-0.970538265570809	0.0647318008199937	0.270538714729983
Merged-chr2-168478132-2	chr2	168478064	168478264	+	898.1666869999999	f0_balb.idr|f1_balb.idr	3' UTR (NM_001136073, exon 11 of 11)	3' UTR (NM_001136073, exon 11 of 11)	112201.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	3.73015184699447	3.90488730512709	3.68579385570032	3.85191397829716	2.82837479087601	2.92475601958646	2.88756644386572	2.97311491642675	-4.71361413260572	5.65030457149976e-07	2.07345217675469e-05
Merged-chr15-98484693-4	chr15	98484595	98484795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2012.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	6.88316376211263	6.72356070724988	6.49309084881618	6.82540709712848	6.80727265922028	6.80356318881098	6.6548140670475	6.71395894903177	0.00329112124546533	0.987253277731855	0.995258250959001
Merged-chr15-64220403-2	chr15	64220303	64220503	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	92270.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	3.04878914402086	3.34312882539716	3.04920355131174	2.403333472634	3.34073276060997	3.28220488043933	2.77172142542001	2.70259018901713	0.130147964141553	0.866876222781366	0.950145249709041
Merged-chr10-127318248-3	chr10	127318151	127318351	+	892.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3713.0	NM_001285785	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	3.64457083896413	3.69493838819644	3.8483216100659	3.64966486385094	3.5575634449598	3.81727716504317	3.63097809773408	3.93575829312529	0.0924467062404405	0.843598128259906	0.940656589135439
Merged-chr6-72438077-7	chr6	72437999	72438199	+	872.6785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046011)	promoter-TSS (NR_046011)	-584.0	NR_046011	78108.0	Mm.440743	NR_046011	ENSMUSG00000108591	Particl	4930414L22Rik|AI449819	promoter of Mat2a antisense radiation induced circulating long non-coding RNA	ncRNA	3.30557054732088	3.42364479341072	3.60921515938873	3.19520453250014	3.67351668018447	3.7289381767205	3.88109721154907	3.93934042021259	1.37248339295539	0.00522135212260805	0.0490563123990389
Merged-chr8-56614473-3	chr8	56614365	56614565	+	940.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63331.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	3.5011065611172	3.27667155058353	3.55551561846025	3.58937951769351	3.59591113453727	3.55958770913548	3.6414467004964	3.44349404068451	0.233253638283375	0.638433045337422	0.847153284197798
Merged-chr13-96593761-4	chr13	96593656	96593856	+	883.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023420, intron 3 of 17)	intron (NM_023420, intron 3 of 17)	51021.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	3.8832855217322	4.66682969028128	4.49124558718767	4.35825752859836	4.2185834154791	4.00689055830158	4.1342363546809	4.2873041675015	-0.523108094537982	0.228491590283037	0.53733507352997
Merged-chr5-92504822-1	chr5	92504722	92504922	+	1000.0	f0_c57.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	835.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	5.56798174614974	5.94916716010013	5.51153829469535	5.49824708837576	5.98733751963044	5.68875723511616	6.00247967327988	5.56504112647171	0.314020188313361	0.262933118878259	0.574735947525663
Merged-chr17-15467848-3	chr17	15467750	15467950	+	868.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30426.0	NM_011185	19170.0	Mm.32912	NM_011185	ENSMUSG00000014769	Psmb1	AA409053|C81484|Lmpc5	proteasome (prosome, macropain) subunit, beta type 1	protein-coding	3.37424187928088	3.40219859434141	3.53592504611363	3.42605798497456	3.50351016633717	3.30067765341454	3.36227648075316	3.48256059794697	-0.0522578139628093	0.917554741841418	0.969637958663496
Merged-chr14-54770588-4	chr14	54770463	54770663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	11323.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	6.33603912319382	6.58681273270752	6.52047145473883	6.01823882186582	7.0062027715845	6.59215446329266	7.11513680514027	7.13582255987047	0.877844518625122	0.000273816573428754	0.00471341955987551
Merged-chr11-29871582-3	chr11	29871478	29871678	+	862.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 7 of 41)	intron (NM_146016, intron 7 of 41)	-45910.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	3.78965179924514	3.82140390993583	3.74373436946451	3.67518116792138	3.25503888512231	3.40874263057754	3.52471402184967	3.35849854359191	-1.2549040423733	0.0135765686510402	0.0978995623556268
Merged-chr1-59895592-4	chr1	59895488	59895688	+	911.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17418.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	4.82996895509367	4.48414350002157	5.04370751507342	4.61780052874044	4.52764604517788	4.32814171363964	4.28501130651533	4.61081368257321	-0.666594411274614	0.0818872290724177	0.310546703508212
Merged-chr4-16102219-4	chr4	16102131	16102331	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61412.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	5.59005637337122	5.77687224756095	6.44173110305354	6.63288685881242	5.58886586243303	5.41326968344394	5.47379768208943	5.8704914271006	-0.95600256041964	0.00403934138654308	0.0403644925667204
Merged-chr18-6491114-1	chr18	6491014	6491214	+	1000.0	f0_balb.idr	promoter-TSS (NM_001276350)	promoter-TSS (NM_001276350)	-257.0	NM_001276350	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	5.98440197304171	6.33738217747168	5.85223935582453	5.91239400473154	5.83414384741589	5.48875306387183	6.13026705454782	5.26597650573989	-0.492896941433108	0.106277617743296	0.359267408498769
Merged-chr13-44819555-3	chr13	44819427	44819627	+	857.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	88256.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	3.54358721643095	3.51125063151395	3.650069204627	3.9593249343331	3.43390885120077	3.34655163217319	3.35557354387647	3.83625727022646	-0.579920034312097	0.27793064972624	0.589999309324299
Merged-chr11-63014850-4	chr11	63014752	63014952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-10718.0	NR_126547	74884.0	Mm.363520	NR_126547	ENSMUSG00000087604	Cdrt4os1	4930452L02Rik	CMT1A duplicated region transcript 4, opposite strand 1	ncRNA	5.66280432440218	5.71424431633255	5.48813502424461	5.86365885608627	5.95088576795786	5.96994324377199	6.29663560506936	6.13349965893934	0.615011134933368	0.0174274677394636	0.11664031276232
Merged-chr11-52343377-4	chr11	52343269	52343469	+	689.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17493.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	3.88293426130538	3.95676019606971	3.9299901963335	3.46505060169623	3.75920570925003	3.74040329514966	3.60836934307302	3.83299672262122	-0.216432803101676	0.655394012541495	0.856076057726398
Merged-chr9-123940833-4	chr9	123940729	123940929	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	27863.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	4.97694205532986	5.50501735608938	5.19044641910772	5.13029600149432	5.40009959593155	5.36534017197368	5.34592232727214	5.34043336900409	0.27232331292761	0.359367556561535	0.665266442591906
Merged-chr5-34534085-4	chr5	34533980	34534180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	8296.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	7.22045040052089	7.20124909339864	7.4042158022325	7.01144326351888	7.18371543111051	7.24825680493117	7.40449964292676	6.95020505260266	-0.00022021784499815	0.99912764108585	0.999577021727546
Merged-chr14-64330625-4	chr14	64330526	64330726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 1 of 4)	L1MD|LINE|L1	86330.0	NM_001253716	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	7.14206313355578	7.03073719921775	6.92995112095618	7.18850072150416	7.06708733110014	6.18353992159572	6.95756251239299	6.60289719113504	-0.446544111850492	0.070055551794404	0.283324808709215
Merged-chr2-50789437-5	chr2	50789391	50789591	+	761.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120193.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	3.15297211107313	3.09527940382772	3.09431934537586	3.25928090163586	3.06258149340319	3.26361841779631	3.08348123312471	3.03106229077519	-0.193091566278747	0.730381208953692	0.893046416190519
Merged-chr2-38376152-2	chr2	38376052	38376252	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24844.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	3.08738206366266	3.19850081359846	3.08774170463829	2.94803816204542	3.14709293729986	3.43934246128896	3.36296093454768	3.37535591544343	0.971307562176093	0.0746661007113521	0.294653123165345
Merged-chr8-125543341-3	chr8	125543202	125543402	+	993.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	26561.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	4.83390532237267	4.7747526557489	5.19843285996921	5.11257468451909	3.88945410105788	3.85985124942755	3.78817505778634	4.27051160148348	-2.524094964823	9.57934087229944e-09	5.09983473410173e-07
Merged-chr4-56685344-4	chr4	56685223	56685423	+	892.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56102.0	NM_025271	11471.0	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Gm26657|Tact1	actin-like 7b	protein-coding	4.34468084540577	4.89829086385349	4.75376899309177	4.90556345670883	4.36584299454621	4.32085631815646	4.50394407123221	4.52169754548896	-0.726560690552291	0.0544338693132738	0.243534247246073
Merged-chr3-157297390-3	chr3	157297291	157297491	+	965.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039094, intron 6 of 6)	intron (NM_001039094, intron 6 of 6)	236699.0	NR_152231	381498.0	Mm.402095	NR_152231	ENSMUSG00000105834	4930592C13Rik	Gm1657|Gm43159	RIKEN cDNA 4930592C13 gene	ncRNA	3.58226172018752	3.75295058621006	3.65334801244441	3.51493558027397	4.68453221881046	4.25242453416153	5.03413960469468	4.57317484542156	2.66043063355733	1.90740853773307e-09	1.16040540433592e-07
Merged-chr8-35709164-2	chr8	35709016	35709216	+	612.25	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	117443.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	2.18910692919174	2.14868023485334	2.1892574604775	2.18991835920363	2.9361533866749	2.85274417497347	2.54901733369769	2.62073149695696	3.46538045074385	0.000159820483496504	0.00301347342908548
Merged-chr18-10531790-4	chr18	10531690	10531890	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083628, intron 18 of 32)	intron (NM_001083628, intron 18 of 32)	78562.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	5.32131317418635	4.93210018426931	5.40813433824778	5.26936359316382	5.6404573592102	5.16386621107358	5.32483657673381	5.31852971195675	0.260362165395363	0.397624969957872	0.6959928129013
Merged-chr1-170863243-3	chr1	170863157	170863357	+	845.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 1 of 15)	L2|LINE|L2	4514.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	3.51476681391644	3.72643348535934	3.51523793014577	3.93774140379114	3.27252077897156	3.24434919338785	3.38749016688471	3.71720031625813	-0.924174367243732	0.0884961450453859	0.324593791002037
Merged-chr5-123133574-4	chr5	123133447	123133647	+	922.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175092)	promoter-TSS (NM_175092)	-918.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	4.22461386428566	4.24807547952204	3.66674692073177	3.73361941448688	3.9348379479363	4.22063443771982	3.98328288724876	4.13742663092544	0.216858278684014	0.639159243199337	0.847469697514773
Merged-chr4-43925802-4	chr4	43925634	43925834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016678, intron 12 of 20)	intron (NM_016678, intron 12 of 20)	-31968.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	6.24187541071242	6.59487413156912	6.0760088174524	5.71769708904029	6.54951625033094	6.56612276022878	6.44134025298399	6.40314900463162	0.460737398822065	0.0849360173811999	0.317074567639189
Merged-chr1-36446429-7	chr1	36446334	36446534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	-1163.0	NM_001310517	214895.0	Mm.287854	NM_001013374	ENSMUSG00000001143	Lman2l	A630028F14Rik|VIP36-like|VIPL	lectin, mannose-binding 2-like	protein-coding	5.0126608685984	5.01471215349993	4.97939141220275	5.06689728575091	5.07553648059293	5.04573290704318	4.73138917855534	5.01010871478216	-0.0895834029776993	0.775389377040481	0.912324026026444
Merged-chr7-81339916-2	chr7	81339816	81340016	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	5318.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	3.31836636163341	3.5900966913785	3.48142926408106	3.28213877116979	3.36964486874841	3.24309192849176	3.30649897915505	3.19626882101268	-0.483029426058109	0.366082200251005	0.670665455220093
Merged-chr7-141048028-1	chr7	141047928	141048128	+	715.5	f0_balb.idr	Intergenic	Intergenic	-13246.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	3.69238624522948	3.50597446999319	3.52992986439013	3.55167460164378	3.72650829484902	3.91115039965805	3.45836550117108	3.74072901897781	0.459711570932567	0.33569096947953	0.645927430703489
Merged-chr19-46319260-2	chr19	46319160	46319360	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028627, intron 11 of 17)	intron (NM_028627, intron 11 of 17)	7606.0	NM_001347454	73728.0	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	2.36824307474327	2.42727225700526	2.63419834305421	2.24606125989317	2.34757723454499	2.61451148710559	2.62353100132065	2.57125506740716	0.667052408435825	0.349943576258743	0.657468765915822
Merged-chr15-77929033-4	chr15	77928915	77929115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019913)	promoter-TSS (NM_019913)	-21.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	8.29779702245983	8.23766488421926	8.09599954692172	8.00877182400826	8.26615982178189	8.31825163652263	8.23799903603602	8.24308074137365	0.137110116573146	0.385381230783186	0.686727457164216
Merged-chr7-99377645-4	chr7	99377547	99377747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-3871.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	6.86926185962303	6.72421925260911	6.94726239842946	6.98972292715316	6.74869636831073	6.3666439626593	6.92439443762947	6.6501889216593	-0.279071991274408	0.196671536650251	0.497808872629998
Merged-chr11-77687384-6	chr11	77687267	77687467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024205, intron 1 of 3)	CpG	1228.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	5.15343160034645	5.56786589673975	5.5470181402445	5.02514271936271	5.66148849583216	5.52599208879194	5.26233444034929	5.64284011299285	0.360812982518167	0.242793476870253	0.553690788483524
Merged-chr3-89727246-4	chr3	89727156	89727356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357958, intron 1 of 14)	intron (NM_001357958, intron 1 of 14)	-3462.0	NM_001146296	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	5.54537467133555	5.44940630696787	5.28273663446794	5.3958078126738	5.60482888726333	5.45958747414935	5.86052423677553	5.24620453299479	0.25237126993941	0.382134342112973	0.684238214631303
Merged-chr14-103762497-4	chr14	103762403	103762603	+	717.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63071.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	3.69241550973087	3.50473848312273	3.64314035335584	3.66344627641691	3.68023195447222	3.26771863772999	3.81411268148393	3.29416731726698	-0.272829594157587	0.6042303071766	0.828424937100762
Merged-chr3-135825297-1	chr3	135825197	135825397	+	1000.0	f0_balb.idr	promoter-TSS (NM_001135150)	promoter-TSS (NM_001135150)	18.0	NM_026228	67547.0	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	4.26796105052688	4.05313321505734	4.55075910479741	4.80732531563354	4.34897574206006	3.90566060897074	4.05758698566633	4.35306742668273	-0.666832077692152	0.140047462276994	0.416132430781438
Merged-chr11-32565356-4	chr11	32565255	32565455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	32089.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	8.31640587122051	8.35864220118189	8.72856402426313	8.56328195373652	8.17544286170441	8.2917253899463	8.05585923003732	8.09551445466917	-0.439714189043239	0.00957779310098227	0.0765137749870726
Merged-chr19-32770095-3	chr19	32769997	32770197	+	894.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 1 of 8)	intron (NM_008960, intron 1 of 8)	12520.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	3.81170870944948	3.61252320675055	3.72114682330994	3.45899876208789	3.61036303978882	3.5149283483057	3.32688855824668	3.27160374921418	-0.67315218699177	0.197415129571801	0.498787070539606
Merged-chr5-24389222-1	chr5	24389122	24389322	+	556.0	f0_balb.idr	intron (NM_001002897, intron 5 of 13)	intron (NM_001002897, intron 5 of 13)	2921.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	3.59163763308269	3.71193096623137	3.69463522196636	3.31175711160004	3.48914333708944	3.65447042931539	3.52386360417487	3.59011027598306	-0.0395951958092911	0.936951940871115	0.977204440107264
Merged-chr7-98717659-3	chr7	98717561	98717761	+	758.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028410, exon 5 of 5)	3' UTR (NM_028410, exon 5 of 5)	14414.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	3.74605505296668	3.84790324034844	3.79668992773154	4.25369240553749	3.30792020708184	3.51296846158673	3.62595204822759	3.63816766786544	-1.31902446319587	0.010119615957936	0.0796180108621562
Merged-chr9-20467291-3	chr9	20467202	20467402	+	799.399963	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR55|LTR|ERVL?	-7142.0	NM_001357809	22688.0	Mm.107441	NM_011753	ENSMUSG00000063108	Zfp26	5033428C05Rik|KRAB15|Zfp-26|Zfp70|Zfp81-rs1|mKIAA4196|mkr-3|mszf14|mszf52	zinc finger protein 26	protein-coding	2.99971283772493	3.41244552487659	3.31058440826248	3.41785576695737	3.15563259680256	3.36577215210836	3.24205245262206	3.19345061748743	-0.241883220539983	0.66466519009026	0.861062110279118
Merged-chr9-58401917-4	chr9	58401849	58402049	+	926.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	31445.0	NR_040727	73529.0	Mm.490924	NR_040727	ENSMUSG00000100487	1700072B07Rik	-	RIKEN cDNA 1700072B07 gene	ncRNA	3.9140285662742	4.33633028422329	4.0763139594325	3.84254232144102	4.5327319598461	4.1497274418807	4.3698196460216	4.5013885017622	0.877312520695764	0.0346304024249743	0.184227011525205
Merged-chr7-45638865-3	chr7	45638746	45638946	+	924.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152217)	promoter-TSS (NR_152217)	-88.0	NR_152217	100126243.0	Mm.440600	NR_152217	ENSMUSG00000110357	A030001D20Rik	1110025D03Rik	RIKEN cDNA A030001D20 gene	ncRNA	3.82758545097546	3.96106782189067	3.97103200931445	4.11460173574081	3.85012815028171	3.53178619699966	3.59608369923237	3.82593084750255	-0.770350063087215	0.100025416510163	0.346947474381213
Merged-chr8-106149185-4	chr8	106149066	106149266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1188.0	NM_133792	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	6.56734096610771	6.78856991792452	7.00697640119531	6.82322055605066	7.08203710704811	6.62260886380592	7.00673119225141	6.61355691437247	0.0739519842726915	0.742089939681391	0.898417179766546
Merged-chr8-19784655-4	chr8	19784594	19784794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270553, intron 6 of 9)	CpG	55118.0	NM_001039553	626415.0	Mm.425517	NM_001039553	ENSMUSG00000096265	4930467E23Rik	TSAP	RIKEN cDNA 4930467E23 gene	protein-coding	9.22945267929221	9.15232586017125	8.73771370668029	8.46171523273273	8.58351421869426	8.77700687752026	8.65949310472033	8.66706622737971	-0.319899546934212	0.111040288868161	0.368157614938712
Merged-chr19-36834768-4	chr19	36834676	36834876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163635, intron 1 of 26)	CpG	544.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	5.04902902896361	5.0683354301914	5.77910151460516	5.48167341888472	5.51027340159283	5.22761937213196	4.98890930412057	5.1174150636597	-0.265558767184895	0.437264442918345	0.725569884895675
Merged-chr8-36958122-3	chr8	36957978	36958178	+	721.799988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCCCCA)n|Simple_repeat|Simple_repeat	-5636.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	2.69859845050125	2.55400963850537	2.69886154488775	2.25941741554792	3.57927031009804	3.5219774513156	3.42977600261265	3.2929412442651	5.54782756292827	4.4851283173998e-11	3.62780623300227e-09
Merged-chr5-29895120-4	chr5	29895027	29895227	+	796.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117987.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	3.82931054322298	3.78828724056471	3.63087791785509	3.21717736984271	3.90564553077251	3.44591162363903	3.85734047008922	3.32873113033328	0.091564418198957	0.869106145965527	0.950890741040292
Merged-chr9-96483842-4	chr9	96483746	96483946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5171.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	6.25172822359506	6.6253287957342	6.58959192642063	6.63691261385842	6.50196991541281	6.61745053432882	6.57134305412666	6.40110410031474	-0.0307595778918597	0.887674483772422	0.957837975902937
Merged-chr6-49319209-4	chr6	49319117	49319317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175098)	promoter-TSS (NM_175098)	-57.0	NM_175098	57895.0	Mm.32416	NM_175098	ENSMUSG00000050786	Ccdc126	6330407D12Rik|AA675040|AI465320|AL022711	coiled-coil domain containing 126	protein-coding	8.34700100299795	8.31641351391649	8.03388357214816	8.19316812757601	8.45875325555176	8.69909365510099	8.7260555199394	8.33195326040655	0.423083609809438	0.0137024228435273	0.098497753542661
Merged-chr5-41684157-2	chr5	41684055	41684255	+	861.0	f0_balb.idr|f1_balb.idr	intron (NM_001310592, intron 4 of 6)	Lx7|LINE|L1	23536.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	4.59649993236393	4.35787574710964	4.33963695826356	4.38250128545792	4.01263673966186	3.84456319611234	3.9991656832194	4.06471874678403	-1.11636102521758	0.00690264966636816	0.0602851166383336
Merged-chr5-64337279-3	chr5	64337176	64337376	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 16 of 18)	intron (NM_001289514, intron 16 of 18)	106919.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	6.11752238257399	4.56736313075782	6.3297792414703	6.53788476182504	5.1965241376501	4.92230419307798	5.01912761635795	5.6225715212835	-1.41510176190278	0.0509475012309006	0.234142057729486
Merged-chr9-57764500-4	chr9	57764386	57764586	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007713, intron 1 of 12)	CpG	1374.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	4.35937286968353	4.51101934567168	4.40521425225875	4.20611048606763	4.82398086261211	4.85135520489528	4.42910330442599	4.56955077296167	0.729334878485754	0.0485137757979727	0.227329966324165
Merged-chr19-5747211-3	chr19	5747111	5747311	+	910.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008520, intron 7 of 27)	intron (NM_008520, intron 7 of 27)	6307.0	NM_008520	16998.0	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	3.682699814015	3.73191097643005	3.88796379823666	3.68073287830316	3.76328813453895	4.10226838429292	3.49346703264457	3.88559085810348	0.238508790230052	0.61394926211436	0.833604331777153
Merged-chr7-34189562-4	chr7	34189465	34189665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026549, intron 4 of 6)	intron (NM_026549, intron 4 of 6)	7105.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	6.67612269574217	6.87573966503434	7.02202681480625	7.48494237103556	6.62949361372798	6.4720338211068	7.27473375979211	6.7933674306287	-0.326432116633045	0.22970502318405	0.538813547740569
Merged-chr9-110710815-3	chr9	110710712	110710912	+	897.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 5 of 6)	intron (NM_028312, intron 5 of 6)	31798.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	3.30303122644915	3.4607947369852	3.24428121772254	3.26306732138362	3.26538046709656	3.22743321785485	3.50108992778005	3.35822729559858	0.0798234156113455	0.879006587270976	0.954737458614146
Merged-chr2-48975210-4	chr2	48975099	48975299	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029924, intron 1 of 16)	intron (NM_029924, intron 1 of 16)	-24965.0	NM_001355296	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	5.22104096440063	5.33233000140191	5.47532756618566	5.65528188959071	4.93522898777906	5.12269770279935	4.99553372308882	4.9792257495636	-0.823274794721592	0.00719564517094408	0.0621576247114841
Merged-chr18-80163914-4	chr18	80163807	80164007	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12425.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	5.29443119246995	5.05168573796776	5.40898114634452	4.84904613135837	5.42126662581097	5.17298111281125	5.43451073334213	5.29165643409788	0.352694310679663	0.261041153499099	0.572958612580253
Merged-chr3-79567390-4	chr3	79567308	79567508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152118)	promoter-TSS (NR_152118)	271.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	5.03543745021366	5.19091826066676	5.19839690904491	5.02767030033496	5.25636475497452	5.27682534787062	4.7464056652115	5.10015103493793	0.0120176232623365	0.969808481085325	0.989095984799937
Merged-chr1-166002817-4	chr1	166002701	166002901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011137)	promoter-TSS (NM_011137)	-167.0	NM_198932	18986.0	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	8.64310929060474	8.81653155356605	8.83764089828076	8.60802879259731	9.15349866517408	9.21406827969768	9.19543057268311	8.83208789912553	0.473337761539532	0.00309310484410576	0.0327381575760006
Merged-chr5-140721008-3	chr5	140720910	140721110	+	841.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-3117.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	3.8687980175563	4.33532604388571	4.06488936041885	4.40217153343118	3.7699073008226	3.69355107816613	3.9539597347919	3.69882231672334	-1.1502388814233	0.0131597523582106	0.0957866870953135
Merged-chr17-84268750-4	chr17	84268663	84268863	+	837.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 30 of 37)	intron (NM_183021, intron 30 of 37)	-80816.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	4.67704630698562	4.32952661847767	4.85064683161068	4.88196120622239	4.36154290448375	4.20242040824604	4.54035253083769	4.7111838715069	-0.537342880728818	0.169995977307133	0.462933034996726
Merged-chr18-15265692-1	chr18	15265592	15265792	+	709.333313	f0_balb.idr	Intergenic	Intergenic	-114246.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	3.69574967251268	3.68337981954784	3.64367828928338	3.74289534344527	3.08856334597372	3.58890367050954	3.9126820704041	3.79311508527611	-0.191849497505949	0.727069081647351	0.89133085313418
Merged-chr5-77095220-4	chr5	77095117	77095317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159901)	promoter-TSS (NM_001159901)	50.0	NM_001159901	74318.0	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding	4.94771716960893	5.13454994862499	5.23376181648447	5.23301379087075	5.16463929980451	5.40922035290433	5.7831308470038	5.54043076973007	0.603462624141413	0.051106417123383	0.234638017733481
Merged-chr9-70207271-4	chr9	70207158	70207358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181072)	promoter-TSS (NM_181072)	-92.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	7.63281966648044	7.50010508332146	7.5661287983084	7.65986246506613	7.15582148492543	7.16684498821605	7.49356340553894	7.60382950074416	-0.302886898794278	0.113537826138379	0.372557114452502
Merged-chr12-111538066-4	chr12	111537976	111538176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173363)	promoter-TSS (NM_173363)	-25.0	NM_178041	217869.0	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	9.1112282915086	9.33731005859807	8.90611149732412	8.77690558407193	9.20093868976923	9.37651417724156	9.09199903794727	9.1393846595973	0.19547568099483	0.262963398908488	0.574735947525663
Merged-chr15-103333419-4	chr15	103333314	103333514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013866, intron 1 of 7)	intron (NM_013866, intron 1 of 7)	924.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	5.89147329353079	5.44124277562829	5.70863033162147	5.95804138734493	5.69229217438798	5.5484927079739	5.57731932200729	5.6015643171616	-0.275848104991388	0.314797650323705	0.626768725941007
Merged-chr3-51561235-4	chr3	51561146	51561346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080793)	promoter-TSS (NM_080793)	-423.0	NM_080793	73251.0	Mm.192111	NM_080793	ENSMUSG00000037111	Setd7	1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717	SET domain containing (lysine methyltransferase) 7	protein-coding	5.90441318461543	5.90920247881092	5.78779379901668	5.78624693326807	5.7617961076889	6.12363190739621	5.8974910239959	5.78369461899868	0.0763453242613365	0.759673074908648	0.905741537670396
Merged-chr9-120434035-3	chr9	120433933	120434133	+	728.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144557, intron 10 of 16)	intron (NM_144557, intron 10 of 16)	-58573.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	3.8755760448435	3.98379478326488	3.70849964089676	4.12356480317455	3.94046459414659	3.94285651379486	4.21919610316015	4.06803087267036	0.263319826614669	0.551776618440686	0.799073691139046
Merged-chr5-66062589-4	chr5	66062512	66062712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	MIRb|SINE|MIR	35567.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	7.27165038132436	7.32117987150032	7.35511433093289	7.38260814561625	7.28733090602072	7.40661036812778	6.93944155791075	7.21358980480796	-0.152177349817958	0.420468369443886	0.713274332060183
Merged-chr8-77435203-4	chr8	77435112	77435312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-81844.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	7.66810716098175	7.77441715672846	7.81968403521762	7.22498034549699	7.89881175593007	7.95921030779395	7.86788536744487	7.49339002602221	0.243802595750911	0.245311631690912	0.556349741345465
Merged-chr7-29816034-4	chr7	29815932	29816132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145880)	promoter-TSS (NM_001145880)	-40.0	NM_146185	233056.0	Mm.224766	NM_146185	ENSMUSG00000011427	Zfp790	6330581L23Rik	zinc finger protein 790	protein-coding	8.13382595156234	8.21776050449339	7.97941343423154	8.26153219521527	7.95151165431978	7.6843227032913	8.12658989726986	7.84306065617474	-0.312954632589033	0.0742199157521155	0.293494410184435
Merged-chr8-106416915-3	chr8	106416824	106417024	+	644.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011764, intron 1 of 3)	intron (NM_011764, intron 1 of 3)	1585.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	3.10594349721687	3.36579670298402	3.1062669754981	3.28796388428596	3.18993777879312	3.40374209904937	3.43958281351114	3.59366749438468	0.657816234836616	0.227742669632958	0.536465946363434
Merged-chr12-81675768-3	chr12	81675673	81675873	+	879.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	44524.0	NM_001033149	69480.0	Mm.130002	NM_001033149	ENSMUSG00000042734	Ttc9	-	tetratricopeptide repeat domain 9	protein-coding	4.15595877919296	3.8629951286978	3.72081980740215	4.17289868536033	3.76477582272511	4.1039296442534	3.52463214993089	4.02470821210715	-0.358350876578579	0.458192603042747	0.741119194927503
Merged-chr5-103725907-4	chr5	103725765	103725965	+	971.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28297.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	4.05834633360767	4.13527886695473	3.95855805311519	4.19621313390204	4.17891798828613	4.02675100420542	3.99319257119821	4.31725258547303	0.0990769971775452	0.810508739127388	0.926833751678515
Merged-chr2-68465695-3	chr2	68465616	68465816	+	821.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	6265.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	3.22388269270624	3.17177110767817	3.49573004270934	3.36866386501759	3.27770139273133	3.20710202720199	3.27119332570649	3.39202828656945	-0.122958147240266	0.817611830301325	0.929973193387846
Merged-chr11-86807763-4	chr11	86807689	86807889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026191)	promoter-TSS (NM_026191)	-129.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	6.03834302886133	6.086213899297	6.28961485891415	5.59000957957116	6.19082162858335	6.03357833453507	5.89793998227384	6.23168245367065	0.14384260723358	0.59687084776276	0.824985875654518
Merged-chr10-17656060-1	chr10	17655960	17656160	+	706.666687	f0_balb.idr	Intergenic	Intergenic	-67168.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	3.7961663623526	4.01796536749698	4.0381936383412	3.63097487643925	3.76206093277183	3.97022985037026	3.67198532475629	4.03563719727823	-0.0184989427420885	0.968263138377789	0.988694268692349
Merged-chr12-69185493-3	chr12	69185395	69185595	+	684.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146035, exon 1 of 1)	exon (NM_146035, exon 1 of 1)	1337.0	NM_146035	217664.0	Mm.206642	NM_146035	ENSMUSG00000043998	Mgat2	AA407964|CDGS2|GLCNACTII|GNT-II|GNT2	mannoside acetylglucosaminyltransferase 2	protein-coding	3.29089261293128	3.23583299368428	3.2912958681714	3.35590290629702	3.56099429415694	3.27523509662964	3.33827753538478	3.78652980667866	0.719089768714483	0.172564894354207	0.466077127390079
Merged-chr16-84985586-1	chr16	84985486	84985686	+	747.0	f0_balb.idr	intron (NM_001198825, intron 12 of 15)	ORR1E|LTR|ERVL-MaLR	13375.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	2.98961549566051	2.99399738470305	3.26569104660338	3.26751686119093	2.61107271342093	2.82432586417254	3.09514411364192	2.92561759966946	-1.17270770566015	0.0737321877375315	0.292443073162251
Merged-chr6-83078481-6	chr6	83078393	83078593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197992, intron 1 of 8)	CpG	103.0	NM_197992	69837.0	Mm.12261	NM_197992	ENSMUSG00000069678	Pcgf1	2010002K04Rik|AU024121|Nspc1	polycomb group ring finger 1	protein-coding	6.45138723724855	6.50624853862715	6.82853919384701	6.27003622241069	6.47380346359192	6.93714363650641	6.25182008976739	6.75702142565475	0.154501074696486	0.541021389529243	0.793009827469438
Merged-chr6-88902287-4	chr6	88902179	88902379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011906)	promoter-TSS (NM_011906)	28.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	8.4080433693456	8.51025281725694	8.22703189453039	8.1747697909027	8.34974255903972	8.70501583048646	8.05693148306319	8.19151401833237	0.0170785617058305	0.92947994233197	0.974513777866012
Merged-chr1-13589400-4	chr1	13589297	13589497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028173, intron 1 of 10)	CpG	513.0	NM_028173	72265.0	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	6.04797591658923	6.36062853815866	6.55089105115855	6.66674122632486	6.8377583726769	6.86830837490088	7.09011429247743	6.80048345784108	0.655573381616537	0.00481266421152902	0.0462045624376078
Merged-chr8-85840752-4	chr8	85840667	85840867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199446)	promoter-TSS (NM_199446)	182.0	NM_028007	71927.0	Mm.61018	NM_028007	ENSMUSG00000031703	Itfg1	2310047C21Rik|AI314457|Cda08|D8Wsu49e	integrin alpha FG-GAP repeat containing 1	protein-coding	5.80535462979247	5.95663633242231	5.9279738031846	6.07515993115945	6.15535740414877	6.17112832334392	6.00813709327653	6.24886642797732	0.296924087758377	0.210285481656383	0.514750336983964
Merged-chr10-62340326-4	chr10	62340235	62340435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038038)	promoter-TSS (NR_038038)	86.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	8.17076070206827	8.17437045599484	8.2327630845633	8.12350478393418	8.39777037079143	8.61253822220141	8.62438904645404	8.27952217058092	0.394718961914586	0.0139218047264502	0.099652048777563
Merged-chr8-26979204-4	chr8	26979116	26979316	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001101502, exon 2 of 2)	exon (NM_001101502, exon 2 of 2)	1880.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	4.50465126713277	4.6163768871586	4.67771188679377	4.80298215690649	4.73790585535799	5.03631443594953	4.9726153927208	4.86181488700369	0.475973584554907	0.161800094338332	0.450789451812593
Merged-chr4-136141166-3	chr4	136141068	136141268	+	934.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2654.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	3.88399224405062	3.8167612999448	3.97867101736853	4.06436638596406	3.46422992621097	3.84826451426715	3.86808381800783	3.83254992486171	-0.557773532099428	0.231649669002255	0.541212886165283
Merged-chr5-100505991-3	chr5	100505884	100506084	+	782.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-5345.0	NM_001359914	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	3.23274616294285	3.45781331547723	3.4910250985747	2.57365281466562	3.70074824946854	3.67160081003729	3.99683511285532	3.9336052586617	1.87848299557903	0.00570361441520733	0.0523842026400055
Merged-chr10-7045839-4	chr10	7045739	7045939	+	922.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-22654.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	4.94552546463323	4.71006119012257	4.79447320250514	3.78450082928705	4.31728760930014	4.55476329094405	4.40054922545858	3.69285916430611	-0.802803139920118	0.126355365748147	0.395108227324488
Merged-chr4-140701947-4	chr4	140701850	140702050	+	965.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173867, intron 1 of 12)	CpG	477.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	4.75345911553326	5.30724565872338	5.4167127390683	5.02871129533045	5.60312191537996	5.21684123425125	5.08528540101498	5.63635415120519	0.483946369025182	0.147117676948577	0.42788514025699
Merged-chr12-91763984-3	chr12	91763889	91764089	+	969.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	B1_Mur3|SINE|Alu	22447.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	4.32667115106833	4.10525507753582	4.75538835705837	4.63852836999715	3.89123854239421	3.93692862973638	4.22048808523168	4.09271486301463	-1.119342665264	0.0101447770761936	0.0797217456126757
Merged-chr16-8738078-6	chr16	8737970	8738170	+	942.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003918, intron 1 of 30)	CpG	272.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	4.30385704374087	4.12749463756827	4.51324556065246	4.11590118210841	4.22332835858384	4.28828895971638	4.49184650481343	4.75386675737288	0.445036664485185	0.270236728816605	0.582055258281755
Merged-chr11-69605977-4	chr11	69605892	69606092	+	940.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013415)	promoter-TSS (NM_013415)	-32.0	NM_013415	11932.0	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	4.62704363830895	4.80874383113421	4.42198995265729	4.45188446751102	4.58579528183433	4.45834923451142	4.5284895648466	4.50546102904338	-0.127304538105824	0.726411776219511	0.891061849409287
Merged-chr7-30091411-3	chr7	30091281	30091481	+	778.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152814)	promoter-TSS (NM_152814)	-871.0	NM_152814	72556.0	Mm.441512	NM_152814	ENSMUSG00000078768	Zfp566	2700043M03Rik|mszf4	zinc finger protein 566	protein-coding	3.49801747784275	3.32622792477862	3.72307092464535	3.4389573857338	4.10185628776872	3.67664012326352	4.02166146536574	3.66831979446033	1.18305172873612	0.0153145469979926	0.106390214793101
Merged-chr8-116943395-4	chr8	116943307	116943507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177700)	promoter-TSS (NM_177700)	14.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	6.84536436462505	6.66385675217689	6.26997521655532	6.47373137525016	6.65223407304888	6.6175390062246	6.74616971382469	6.34416382414419	0.0351815698927058	0.879382104851958	0.954842749021429
Merged-chr1-88095082-4	chr1	88094996	88095196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201642)	promoter-TSS (NM_201642)	95.0	NM_201642	394432.0	Mm.300095	NM_201642	ENSMUSG00000090124	Ugt1a7c	A10'|A13|Ugt1a10	UDP glucuronosyltransferase 1 family, polypeptide A7C	protein-coding	5.96700687954614	5.6016556552865	5.90132323310358	6.08823413745608	6.01994479503563	6.00638505642928	5.91589266786933	5.82672259670223	0.0539140986013712	0.833254567989135	0.936237948428556
Merged-chr5-108566730-3	chr5	108566622	108566822	+	874.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16695.0	NM_007756	12889.0	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	3.84260251600264	3.97677201101121	4.15688444145299	4.19621057564296	3.60752512443587	3.47323400396113	3.92390154036909	3.67897902074453	-1.10180568163095	0.0210125816399689	0.132406582852884
Merged-chr3-98025698-4	chr3	98025590	98025790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	12152.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	6.31942507117027	5.98564221711693	6.28377169501735	6.4743600998455	6.11016274223645	6.09743235490714	6.59075246699758	6.35171808256676	0.0197252635692	0.937527091608287	0.977360802214275
Merged-chr11-110244885-3	chr11	110244803	110245003	+	895.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166557, intron 5 of 6)	MLT1A1|LTR|ERVL-MaLR	6873.0	NM_147218	76184.0	Mm.159704	NM_147218	ENSMUSG00000044749	Abca6	6330565N06Rik	ATP-binding cassette, sub-family A (ABC1), member 6	protein-coding	5.09072854808282	4.49729196455484	5.14553003953189	4.61275482586652	4.10989877466485	4.63750453513902	4.39326583896788	4.45635447327002	-0.997406185674233	0.0143959835285466	0.101888407236594
Merged-chr5-137046149-4	chr5	137046035	137046235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007457)	promoter-TSS (NM_007457)	-27.0	NM_007457	11769.0	Mm.833	NM_007457	ENSMUSG00000004849	Ap1s1	AP19	adaptor protein complex AP-1, sigma 1	protein-coding	5.69664811606913	5.84836351412511	5.50658871694401	5.18196601913889	5.75052839627776	5.94592743995992	5.91894215725304	5.83705775173612	0.492598442898398	0.084773666998262	0.316831105683339
Merged-chr4-139166416-4	chr4	139166323	139166523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	14232.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	5.56137033692818	5.26984009367981	5.46591078355448	5.44166374675905	6.57932922267511	6.75473224527207	6.4890387932509	6.53275558492763	1.79212479734271	5.96297811845456e-14	8.13101186769113e-12
Merged-chr12-77060218-4	chr12	77060130	77060330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97982.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	5.91990542735945	6.03427169318454	6.79128422861835	6.76984857570292	5.94500997692274	5.91775774476154	6.32130513206021	6.05609734928724	-0.577250444224082	0.0534065874571107	0.241207327957467
Merged-chr12-79131603-2	chr12	79131503	79131703	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 1 of 7)	intron (NM_009705, intron 1 of 7)	815.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	3.29828601218684	3.32877054555281	2.97437724843664	3.49399739921237	3.48466918506948	3.41059036920894	3.34202298667771	3.23830265646769	0.26628134347156	0.637032894812509	0.846526854227832
Merged-chr4-128924373-4	chr4	128924288	128924488	+	908.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38067.0	NM_172875	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	4.48122109782297	4.37294847637413	3.73671638135227	4.05196489482336	4.14373045830543	4.28872905467789	3.89718679313979	4.01606007523792	-0.238406788244183	0.602117002770568	0.827431600688833
Merged-chr13-101841440-4	chr13	101841336	101841536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73219.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	6.14768974288456	6.58952408916026	6.28852430667126	6.6716799098702	6.35369791764833	6.14644915310021	6.36435864853316	6.18588202722363	-0.28117356147631	0.243635537211122	0.554651503331108
Merged-chr9-41207630-4	chr9	41207519	41207719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040392, intron 1 of 4)	intron (NR_040392, intron 1 of 4)	1464.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	6.40388670240822	6.5667410982613	5.99183380586451	6.18198521563472	7.10693341273808	7.15359205531513	6.83202934323831	6.86216279948256	0.998509220178566	1.19645900039723e-05	0.000323689681449162
Merged-chr14-46915704-4	chr14	46915600	46915800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	32735.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	5.95259944160449	5.44422627819465	5.71416574871632	6.18558043622776	5.36348799716064	5.29433248989988	5.23119772680679	5.41430946539062	-0.920575050810923	0.00232940448618394	0.0263015041120061
Merged-chr12-85781853-4	chr12	85781755	85781955	+	823.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145447, intron 1 of 9)	intron (NM_145447, intron 1 of 9)	35316.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	4.90763613175387	4.95123955533041	5.22396592685633	4.89717459910259	4.30464018651288	3.92320322762199	4.55309867751334	4.57136335531674	-1.38403566282015	0.000480473453975322	0.00748186829588919
Merged-chr10-19044070-4	chr10	19043984	19044184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16|LTR|ERVK	-28674.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	7.45772181597375	7.63975037460059	7.28923442654157	7.5495055150163	7.26927143933408	7.24542819258582	7.52047060299354	7.01051178527975	-0.295453032000008	0.132712925733139	0.405737193572677
Merged-chr13-47251306-4	chr13	47251208	47251408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	57305.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	5.82425732664946	5.59344762634641	5.97937198264987	6.33036756688926	5.48456899382731	5.62553943533481	5.48016841247539	5.95421436822827	-0.539542235490021	0.0718169895114374	0.28789488040294
Merged-chr2-73541048-4	chr2	73540933	73541133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11546.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	6.9788707607651	6.6403619637551	7.13176964893784	7.09288854835313	6.99251439730907	6.44558243195633	6.60634460737489	7.2013354668838	-0.173503366271198	0.480926405415164	0.756237807870056
Merged-chr14-50830110-4	chr14	50830000	50830200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 45 of 54)	G-rich|Low_complexity|Low_complexity	22184.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	5.58970202151677	5.19154757094551	5.59067449850315	5.80197740326017	6.03480601587389	5.97263578052495	6.06269119646084	5.95036226176513	0.694450502556774	0.0111116912293794	0.0850633544865559
Merged-chr10-57714445-4	chr10	57714370	57714570	+	801.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	63489.0	NM_001190402	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	3.30866989747793	3.8670460010753	3.49503108973929	3.61795946881277	3.50217881128538	3.66825080575032	3.82961861111692	3.43414764570759	0.0711220025499416	0.890515007845545	0.959042073191382
Merged-chr4-116777245-3	chr4	116777133	116777333	+	986.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146151, intron 4 of 10)	L2|LINE|L2	30326.0	NM_026654	68276.0	Mm.30534	NM_026654	ENSMUSG00000028688	Toe1	4930584N22Rik|4933424D16Rik|AI413517	target of EGR1, member 1 (nuclear)	protein-coding	4.51320194260086	4.05948507093946	4.7103944666685	4.46262703168067	3.93759033162177	3.82136061627883	3.81052048186408	4.04457040683942	-1.41458557286369	0.00151408867876605	0.0188148250813353
Merged-chr2-75737409-4	chr2	75737289	75737489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32726.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	6.34656219546802	5.98202960885877	6.15402614005544	6.20888086439696	5.73810766617319	5.85113980210853	5.7502620105368	5.77544433684875	-0.639285010653829	0.00859391740218341	0.0707175082971113
Merged-chr1-24686425-4	chr1	24686338	24686538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026719, intron 2 of 15)	MIR|SINE|MIR	7520.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	6.14954833248697	6.27050892943524	6.31164138647229	6.80049334139365	6.05900761883371	6.61322007978953	6.50262799787592	6.57793031649284	0.029359073492015	0.912806588857654	0.967354887470906
Merged-chr6-53612265-4	chr6	53612164	53612364	+	873.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 7 of 10)	intron (NM_001327821, intron 7 of 10)	38890.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	4.40306110027045	4.26366170100995	4.49013772842798	4.93665784119225	4.64353396373015	4.33895407496824	4.66115193373954	4.40101185236561	-0.105920425511073	0.79470363099995	0.920584812443453
Merged-chr15-79209251-4	chr15	79209119	79209319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029470, intron 2 of 4)	intron (NR_029470, intron 2 of 4)	-19954.0	NM_008837	18693.0	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	5.74073180047042	5.92059648322516	6.02211549001691	5.974988876685	5.74018268889737	6.23727426925035	5.97032498270028	5.95338711063087	0.083621893020223	0.742142705527546	0.898417179766546
Merged-chr13-56616554-4	chr13	56616470	56616670	+	989.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 2 of 16)	intron (NR_155548, intron 2 of 16)	6984.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	5.31637727778133	5.12349834783997	5.10151285664049	5.19864388157867	5.09059524741581	5.37134855426635	4.93607622177221	5.19495119975713	-0.0658939812884254	0.827890238948626	0.933948258496961
Merged-chr2-167631293-4	chr2	167631264	167631464	+	950.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311131, intron 1 of 4)	CpG	641.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	3.96487254031974	3.81352400135076	4.29536658396444	3.79957006110306	4.25633871738409	3.85556723812534	4.27518994985004	4.74117092996476	0.868075288514517	0.0601209608393179	0.258836863943737
Merged-chr4-141404980-4	chr4	141404878	141405078	+	946.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019701, intron 18 of 19)	intron (NM_019701, intron 18 of 19)	-6272.0	NM_024412	12733.0	Mm.167900	NM_024412	ENSMUSG00000033770	Clcnka	C75963|CLC-K1|Clcnk1	chloride channel, voltage-sensitive Ka	protein-coding	4.07193906483665	4.63244590974291	4.46137707963386	4.3151927087116	4.61851821278212	4.5040967361928	4.35497374429081	4.78907191075244	0.436287591286461	0.261124348027949	0.573005209121725
Merged-chr5-120775472-4	chr5	120775366	120775566	+	995.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145226, intron 1 of 15)	intron (NM_145226, intron 1 of 15)	2193.0	NM_145226	246727.0	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	5.23117475324764	5.14677146230433	4.89291833131112	5.43642049083976	4.75032430859441	5.34374557183066	5.04903883362668	5.03613216230457	-0.29563125733528	0.380162659268883	0.682564774596403
Merged-chr9-118557054-3	chr9	118556961	118557161	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_018748, exon 15 of 24)	exon (NM_018748, exon 15 of 24)	-49648.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.66745210252231	5.32022770812848	5.41336285006353	5.72003057258781	3.86523841900859	4.00789344354158	4.11349091288101	3.79827969877796	-3.33367699362102	2.39475830007319e-12	2.39872482776046e-10
Merged-chr14-51931031-1	chr14	51930931	51931131	+	671.0	f0_balb.idr	Intergenic	Intergenic	-8258.0	NM_001011687	497071.0	Mm.378602	NM_001011687	ENSMUSG00000068392	Rnase13	-	ribonuclease, RNase A family, 13 (non-active)	protein-coding	3.30643714599558	3.39551070307771	3.30690042602346	3.389983828474	3.16625743552518	3.04938393024251	2.93383734080347	2.94080575492618	-1.28152347039226	0.0287187055641811	0.162752288483507
Merged-chr3-133310552-3	chr3	133310459	133310659	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293641, intron 1 of 11)	CpG	449.0	NM_001293641	74776.0	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	6.31804960131275	6.1818251290309	7.20714657784677	6.4918845836994	5.96544062623628	5.98408367390771	6.21083538033452	6.23849955564093	-0.757057129815175	0.00954281243426644	0.0762942655575257
Merged-chr4-33265442-4	chr4	33265290	33265490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-16603.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	5.93104158447513	5.58695622334915	5.9543399277817	6.19731130651498	6.05543928512841	5.69006235396988	5.92395765589549	6.15311345051848	0.0350949829980074	0.897708784034907	0.961783547403113
Merged-chr11-98954734-4	chr11	98954640	98954840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-5731.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	5.28085150105381	5.26199529723283	5.37568269437533	5.68332066982814	5.42694822350207	5.63725102421988	5.64175691830645	5.51444132728597	0.204983827013261	0.479925672651797	0.755620431575299
Merged-chr8-109779414-6	chr8	109779292	109779492	+	996.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301211, intron 1 of 22)	intron (NM_001301211, intron 1 of 22)	809.0	NM_001301211	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	4.32131332821841	4.52261880379371	4.66262508660676	3.92943634522829	4.77847316060195	4.63610806136814	4.67676920928917	4.80073312882031	0.796626143558673	0.0442062503034748	0.214466584815679
Merged-chr11-4260665-4	chr11	4260592	4260792	+	992.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008501, intron 1 of 3)	intron (NM_008501, intron 1 of 3)	3124.0	NM_008501	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	6.37036883346174	6.74526514912601	6.09707742068246	5.92223787453212	6.07898265088539	6.31321703038439	5.34897753217243	5.37186596735036	-0.726475679262733	0.0350880224174932	0.185593257991634
Merged-chr6-71633478-4	chr6	71633374	71633574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173001)	promoter-TSS (NM_173001)	-557.0	NM_001362200	104263.0	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	8.09492299364443	8.03651539217554	7.72509107317489	7.78380924069684	7.96901420836577	8.15056193850461	8.00739900640354	7.50266036074591	0.0159992687897755	0.936270263847513	0.97690766292493
Merged-chr11-55028656-4	chr11	55028553	55028753	+	975.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 1 of 24)	intron (NR_138556, intron 1 of 24)	4818.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	5.15916428261359	5.1602470339585	4.84367313331409	5.17011482745628	5.13476867791709	5.13290877713474	5.19494077072591	4.91774055719426	0.00418598649022583	0.989201428227687	0.995658844162507
Merged-chr12-78350969-4	chr12	78350857	78351057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172952, intron 2 of 23)	LSU-rRNA_Hsa|rRNA|rRNA	124302.0	NM_145965	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	6.23387255429489	6.41594481887733	6.38724947783354	2.93161958418818	5.85506274080244	6.04447613484033	5.75739125960978	6.87655143830641	0.239924111755432	0.867619457079983	0.950374499245874
Merged-chr14-79487469-5	chr14	79487395	79487595	+	799.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	intron (NM_007920, intron 1 of 8)	-6227.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	3.30429634194902	3.46017919442332	3.30471517097479	3.55147182632495	3.4379934423462	3.16108285171716	3.11115731772636	3.30302130261615	-0.539998318238928	0.326073697101104	0.63759347119498
Merged-chr7-25737062-2	chr7	25736962	25737162	+	791.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178089, intron 7 of 7)	B3|SINE|B2	17697.0	NM_144922	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	3.28757844441408	3.15524766415536	3.01463874908205	2.99129436967968	3.02068611282385	2.99404558837144	2.80989872611233	2.95080499971115	-0.690204081320532	0.249975406094111	0.561080960846769
Merged-chr17-83527415-4	chr17	83527316	83527516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13083.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	5.4855911286278	5.39624074147307	5.59032433258587	5.3843045103583	5.08778898038754	5.21708930143725	5.56197616981411	5.53559665606912	-0.179991944339337	0.541107891396589	0.79305195415756
Merged-chr4-58968202-1	chr4	58968102	58968302	+	811.5	f0_c57.idr	intron (NM_025968, intron 9 of 9)	intron (NM_025968, intron 9 of 9)	18876.0	NM_025968	67103.0	Mm.34497	NM_025968	ENSMUSG00000028378	Ptgr1	2510002C21Rik|Ltb4dh|Zadh3	prostaglandin reductase 1	protein-coding	3.01897308693096	2.94177247736017	3.17753141611005	3.04708009841875	4.07520117136099	3.85790631092379	3.85607676934367	4.32404897663314	3.3400694014827	4.45537213364963e-08	2.06868188585158e-06
Merged-chr17-31560158-4	chr17	31560066	31560266	+	953.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-4607.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	5.14590514368708	5.18987292762079	4.96105007677526	4.26409259436938	4.96849885488517	4.99487074284395	4.50870572419017	4.57183867287278	-0.301030465244652	0.466960937535386	0.746682225206256
Merged-chr12-40680648-4	chr12	40680506	40680706	+	890.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 12 of 52)	L1MC4|LINE|L1	234553.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	3.3244733650871	3.20521906088584	3.0797104718956	3.03669939006142	3.64573571297207	3.32032424017343	3.36587306831906	3.26606462408324	0.94139982675193	0.0818793710334905	0.310546703508212
Merged-chr15-27670295-4	chr15	27670202	27670402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	11240.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	7.46182611494516	7.68702678500937	7.34654616677433	7.12078138489056	7.52310792846892	7.42866717513285	7.23685479870701	7.01822247061529	-0.124499181418037	0.564362036137202	0.806738269072778
Merged-chr19-6952445-4	chr19	6952349	6952549	+	876.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007522)	TTS (NM_007522)	9887.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	3.74753136368354	4.01978892254009	3.52615675380343	3.53882095069337	3.72543518715817	3.86760392698701	3.62762597181265	3.69394631522712	0.0343957356342377	0.943344779885754	0.97953264729624
Merged-chr13-18795084-4	chr13	18794996	18795196	+	896.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	77804.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	4.36824079504627	4.14773128537822	5.19770217019439	4.94211604224625	4.40955623642686	4.45069332679807	4.68629762971302	4.7782529205469	-0.313568376727672	0.47329845332877	0.751096038380678
Merged-chr12-103532959-4	chr12	103532827	103533027	+	799.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028980, intron 1 of 24)	intron (NM_028980, intron 1 of 24)	362.0	NM_028980	74521.0	Mm.248619	NM_028980	ENSMUSG00000021209	Ppp4r4	8430415E04Rik|mKIAA1622	protein phosphatase 4, regulatory subunit 4	protein-coding	3.46356203317111	3.38745149307165	3.21908855263909	3.24402372304683	3.53597875867173	3.58010714068404	3.60606237774468	3.71449038646782	0.951240895296205	0.0543265083898175	0.243370038434062
Merged-chr7-83802724-4	chr7	83802625	83802825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7886.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	6.87061345458828	6.53589766092772	6.68921273272915	7.0243480094367	6.57074961718418	6.63527069241261	6.67009747435816	6.91813557180827	-0.146641363735867	0.510607368767249	0.774870414068822
Merged-chr11-73321283-3	chr11	73321183	73321383	+	971.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023113, intron 2 of 5)	RLTR45|LTR|ERVK	3354.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	4.34077983681575	4.26291598196717	4.34146980078104	4.18656576053765	4.33909463855916	4.14325614941695	3.95086482396754	4.06852870010259	-0.336318871140791	0.409442707278753	0.705027516786277
Merged-chr12-69538108-4	chr12	69537948	69538148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44980.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	6.20866747019081	6.9985625303781	6.55672972091591	6.00356321182341	6.17911500106651	6.65409610907568	6.05266157920381	5.63784124990748	-0.471751104099041	0.149138366898606	0.431184018629893
Merged-chr15-76069841-4	chr15	76069734	76069934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134089)	promoter-TSS (NM_134089)	-50.0	NM_001310542	105782.0	Mm.25568	NM_134089	ENSMUSG00000022568	Scrib	AI118201|CRIB|Crc|SCRIB1|Scrb1|mKIAA0147|vartul	scribbled planar cell polarity	protein-coding	7.15986773325568	7.26359469794194	6.75703247212629	7.08252336401765	7.43685803188025	7.49970922333893	7.21378020518329	7.40579125831274	0.421393921702132	0.0330070692999013	0.17828275805871
Merged-chr18-4987440-3	chr18	4987353	4987553	+	997.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59136.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	4.83341952467607	4.41504423214594	5.04537997963334	5.2338891234074	4.12414610426961	3.97948265480419	4.51813745215732	4.09936560407491	-1.65660079049748	0.000129216038792915	0.00251640722988808
Merged-chr7-41499465-4	chr7	41499372	41499572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033530, exon 1 of 4)	5' UTR (NM_001033530, exon 1 of 4)	418.0	NM_001033530	101835.0	Mm.370336	NM_001033530	ENSMUSG00000074166	AW146154	AI451288	expressed sequence AW146154	protein-coding	7.32984863026602	7.33541945889996	7.44399704490125	7.7670482762741	7.59444197333939	7.45409131403857	7.94666198439275	7.71891061713255	0.259577781676791	0.203381332259002	0.506170662223812
Merged-chr13-43739830-3	chr13	43739714	43739914	+	883.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23023.0	NR_046022	622552.0	Mm.375036	NR_046022	ENSMUSG00000110016	Gm20751	-	predicted gene, 20751	ncRNA	4.53721739496121	4.16306072371186	4.17315624100928	4.01015252022096	4.0468441772304	4.14879776635908	4.36815852779075	4.26111619397283	-0.0372542796870526	0.928943627843663	0.974317157505369
Merged-chr10-94537278-4	chr10	94537171	94537371	+	852.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	B2_Mm1t|SINE|B2	-13601.0	NM_001359761	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	4.54006940413903	3.92347085870237	4.26767264776173	4.48493078673189	4.07720430565577	4.04283084280989	4.15924428473409	4.26499407459709	-0.4834657104115	0.255258454319441	0.566852976271238
Merged-chr2-32081507-4	chr2	32081416	32081616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151493, intron 2 of 5)	intron (NR_151493, intron 2 of 5)	2189.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	7.53894594478766	7.40093729802835	7.45784954444386	7.33077067740406	7.52437121545866	7.49505427922733	7.49422076797349	7.28060164611071	0.0364561430929567	0.836434539179484	0.937753764021861
Merged-chr6-134070084-4	chr6	134069982	134070182	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	34382.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	4.49943153789614	4.47319808142963	4.13714404863637	4.7613897021866	4.27147238032907	3.83457212263973	4.47911640773487	4.7141810747734	-0.304288151771794	0.501162721069851	0.769119803481994
Merged-chr10-130318939-4	chr10	130318829	130319029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3923.0	NM_183264	67596.0	Mm.131264	NM_183264	ENSMUSG00000034833	Tespa1	5830405N20Rik|A430001F24Rik|AI450549	thymocyte expressed, positive selection associated 1	protein-coding	6.37481039469672	6.29372804110172	5.83348174355021	6.79184789692976	6.06136519778239	6.20345555285864	5.9269917715598	5.99947548498352	-0.513332669488012	0.067576652220749	0.277487549408634
Merged-chr11-8597094-4	chr11	8597006	8597206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	67429.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	7.29393208829698	7.16593720140981	7.32545720530111	7.30471717826001	7.04781944430958	7.12131713435283	6.7357981866704	7.31035127410677	-0.280326375687002	0.161507649795251	0.450344850737501
Merged-chr3-135422470-2	chr3	135422370	135422570	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025902, intron 1 of 2)	intron (NM_025902, intron 1 of 2)	963.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	2.99104661439711	2.83269823020264	3.15854649562071	2.63722284078242	2.94236699382326	3.04090412857495	3.03726452783629	2.72807192359155	0.13768613669718	0.829760411003517	0.934618333601978
Merged-chr9-123840492-4	chr9	123840388	123840588	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 3 of 17)	intron (NM_001110253, intron 3 of 17)	11173.0	NM_148925	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	5.41187072607531	6.78134404884257	5.91090546977263	5.70997433227444	5.49902552946169	5.74262976565918	5.41693497772566	5.23870726720998	-0.944343016870568	0.0103867374695695	0.0811545100270571
Merged-chr8-20424315-4	chr8	20424218	20424418	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028428, intron 1 of 5)	CpG	496.0	NR_028428	381598.0	Mm.359054	NM_001024708	ENSMUSG00000071793	2610005L07Rik	2810038F24Rik|6720476A01Rik	cadherin 11 pseudogene	pseudo	5.12379630677838	4.88724634155823	5.60609455405378	4.404652194746	4.739804512832	4.82362606045075	4.86348814069896	5.18146962356141	-0.307168877258135	0.45309899317268	0.73725301714569
Merged-chr4-156109877-4	chr4	156109776	156109976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145557)	promoter-TSS (NM_145557)	-122.0	NM_145557	230996.0	Mm.318925	NM_145557	ENSMUSG00000059939	9430015G10Rik	-	RIKEN cDNA 9430015G10 gene	protein-coding	8.60434371526896	8.50447273854118	8.51083116366537	8.67924265948334	8.49712927853159	8.60701926340898	8.67948454708086	8.64504890685184	0.0326107164848976	0.825872698860065	0.933180824081032
Merged-chr2-156312587-4	chr2	156312486	156312686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001316755, exon 1 of 10)	exon (NM_001316755, exon 1 of 10)	113.0	NM_001316755	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	6.7045759075239	7.43045368247709	6.73697434578491	6.7427117225192	7.20412902746522	7.29603307576249	6.86112246744574	7.00787881918794	0.222499615674993	0.364738529334872	0.669509213315223
Merged-chr6-138095311-4	chr6	138095203	138095403	+	968.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15387.0	NM_177787	277898.0	Mm.269823	NM_177787	ENSMUSG00000044378	Slc15a5	9830102E05Rik	solute carrier family 15, member 5	protein-coding	4.83739933924723	4.51287323208857	4.71747387514348	5.26639364139271	4.90139148896567	4.46412367075093	4.99254235128589	5.76787802455777	0.473437360838487	0.282421203418851	0.594592148794809
Merged-chr11-20146169-2	chr11	20146070	20146270	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGAA)n|Simple_repeat|Simple_repeat	-33219.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	3.23844818609804	3.18505421729046	3.3556300480377	3.47381871547647	3.19505529262305	3.28819562062139	3.1010569340453	3.73563481057593	0.0990530214511458	0.862150475325439	0.947987281539677
Merged-chr3-159840298-4	chr3	159840189	159840389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356350, intron 1 of 12)	intron (NM_001356350, intron 1 of 12)	639.0	NM_001356350	68151.0	Mm.6766	NM_026582	ENSMUSG00000028173	Wls	5031439A09Rik|AI173978|AI987742|EVI|Gpr177	wntless WNT ligand secretion mediator	protein-coding	5.55523233544067	5.16888509040221	5.63171127394001	5.40221414179009	5.18791288792366	5.62209300762351	5.62710334837828	5.35640902263448	0.0131675856181158	0.964787012263552	0.987512039601204
Merged-chr19-38819263-4	chr19	38819176	38819376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021315)	promoter-TSS (NM_021315)	-39.0	NM_021315	57753.0	Mm.86482	NM_021315	ENSMUSG00000024999	Noc3l	AF233884|Fad24	NOC3 like DNA replication regulator	protein-coding	7.58285146093947	7.56576450325782	7.66895250927841	7.88201493071073	7.48340890963486	7.28814528449447	7.60666536986325	7.54334069510069	-0.268607361536193	0.142665302141543	0.420400477794778
Merged-chr19-46056499-4	chr19	46056432	46056632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081214)	promoter-TSS (NM_001081214)	-7.0	NM_001346801	226169.0	Mm.2415	NM_145504	ENSMUSG00000055491	Pprc1	A930018M19|BC013720|PRC|mKIAA0595	peroxisome proliferative activated receptor, gamma, coactivator-related 1	protein-coding	6.91989461138116	7.02387772527079	6.45006684139713	6.65458744561618	7.00458573024158	6.75020047763802	6.61987248746797	6.76854570263736	0.0311565850964451	0.891030178818029	0.959254414522706
Merged-chr4-83324289-4	chr4	83324199	83324399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027238)	promoter-TSS (NM_027238)	-110.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	8.69324503144711	8.85995493594129	9.01001661152888	8.87881629236588	8.84548081439075	8.83639045434683	9.1217398659362	8.70668681611061	0.0260355158625432	0.872292864846539	0.95200683584403
Merged-chr8-115307634-4	chr8	115307536	115307736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	399258.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.78948539016599	6.23227526525066	5.61371427926398	5.03523284476407	5.7001910667815	6.0770609612624	5.55802402316247	5.58237249405767	0.0199187009519844	0.954477945221471	0.983764634562976
Merged-chr5-121545991-4	chr5	121545883	121546083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010765)	promoter-TSS (NM_010765)	-91.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	6.19483871420804	6.58953917714875	6.23741612964649	6.23064474209832	6.67075721303717	6.9519348318803	6.24541748389098	6.7317802046411	0.510968798182163	0.0372537163050555	0.192538923956065
Merged-chr17-33555597-6	chr17	33555492	33555692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053214)	promoter-TSS (NM_053214)	-115.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	6.62130271577787	6.77508901443477	6.73841508904377	6.48646048554142	6.32563705696509	6.41220093087779	6.55806032410623	6.32900189838306	-0.357734993959696	0.0987433929420756	0.344464613126054
Merged-chr16-23383187-3	chr16	23383068	23383268	+	689.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45965.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	3.53342040173502	3.39538073007726	3.37860245180272	3.43808028993815	3.34362318710624	3.10590022460107	3.25199649072971	3.37677960599129	-0.573339527376025	0.279306352374477	0.591442460155378
Merged-chr4-59806308-1	chr4	59806208	59806408	+	921.6666869999999	f0_balb.idr	intron (NM_172468, intron 1 of 8)	CpG	658.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	4.42058493658898	4.19478041803501	4.29674086971406	4.3638663114659	3.99462099162777	4.37970783845226	3.98845737433429	4.49497726435192	-0.236856771538722	0.566293480622142	0.807835530970224
Merged-chr13-119444435-3	chr13	119444340	119444540	+	920.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145457, intron 4 of 10)	intron (NM_145457, intron 4 of 10)	15538.0	NM_145457	218693.0	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	4.04849164943823	3.755727033552	4.09243770374339	4.02045870435514	3.51860492460853	4.1280179982767	3.79179781062528	3.69434003929244	-0.547140653107474	0.250086027479277	0.561176143917657
Merged-chr5-66259899-3	chr5	66259822	66260022	+	838.25	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_027602)	promoter-TSS (NM_027602)	24.0	NM_001302834	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	3.99655138712585	4.03035126812983	4.28578080898344	4.10380677631518	4.52878617603193	4.22406028689529	4.49924368204107	4.32565583527853	0.74078611399192	0.0589423407598509	0.255664647955236
Merged-chr8-72281800-4	chr8	72281687	72281887	+	940.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37275.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	4.64986600827534	4.33993534935734	4.75755831301924	4.68623677934553	4.21037387527802	4.17228932858503	4.47177024634403	4.88376154849706	-0.345980341035537	0.395550255357047	0.694444703797431
Merged-chr14-52104250-4	chr14	52104147	52104347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360176)	promoter-TSS (NM_001360176)	-226.0	NM_001360180	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	9.32955709234558	9.40462050806926	9.47200668363909	9.35001421805482	9.11986070224722	9.37837928367196	9.14131000948871	9.11728859966202	-0.24324641880886	0.0878915026180211	0.32337585365699
Merged-chr7-141370763-4	chr7	141370663	141370863	+	958.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-5653.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	5.2335874629297	4.82982511522839	4.89265587178284	5.01172412468734	4.77469809288614	4.91668889160449	4.83334134861758	4.65522795616791	-0.410764852400817	0.214077560466441	0.519760776219968
Merged-chr13-5871538-4	chr13	5871421	5871621	+	946.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10032.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	5.4366783616402	5.33846983605078	5.330689179374	5.29718884605046	4.75783642507564	5.38705419810978	4.88000854737128	4.64294177638638	-0.777848939731607	0.0198893466823939	0.127621365501317
Merged-chr6-108214734-4	chr6	108214639	108214839	+	990.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 2 of 61)	intron (NM_010585, intron 2 of 61)	1643.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	5.38172518092976	5.45537048616716	5.02605657815018	5.62743493549856	5.32838574554571	5.34295074122892	5.23825147322729	5.02271669102516	-0.299913834513928	0.33454270478543	0.645071328704234
Merged-chr17-10841018-4	chr17	10840911	10841111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027032)	promoter-TSS (NM_027032)	652.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	5.32979671618593	5.50298704832014	5.57226963065444	5.670969627706	5.71032119147313	5.63440266034393	6.14127726841792	5.74753880177263	0.474337210775759	0.0881887015450621	0.323966948145952
Merged-chr13-9082790-3	chr13	9082681	9082881	+	817.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11100.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	3.28559313751207	3.22356857610171	3.59271321045776	3.49334425677735	3.39522422092088	3.20970952891624	2.9523773074317	3.28431141571958	-0.664465969939641	0.248513937886215	0.559653671174198
Merged-chr7-27838564-4	chr7	27838476	27838676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011762)	promoter-TSS (NM_011762)	-8.0	NM_011762	22717.0	Mm.379046	NM_011762	ENSMUSG00000078779	Zfp59	Mfg-2|Mfg2	zinc finger protein 59	protein-coding	5.3124175912764	5.32880324469439	5.99416797085181	5.32262407345295	5.13958559347334	5.5196734168385	5.34730601339514	5.30964216661341	-0.326897708698784	0.308398846082845	0.620793493346942
Merged-chr3-148978277-4	chr3	148978177	148978377	+	944.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23642.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.99834805031756	5.00698916354419	5.09033496175091	4.87705955306701	4.87984375634556	4.6839382666814	4.61540510633814	4.07028378429941	-0.797421612259081	0.0390003713407103	0.198427979389594
Merged-chr3-105931315-4	chr3	105931226	105931426	+	807.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033780, intron 1 of 5)	intron (NM_001033780, intron 1 of 5)	1338.0	NM_001033780	433638.0	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	4.36706973481226	4.18466581812853	4.40913122968159	4.89531957559899	4.29526468551731	4.1022664137763	4.21651353656183	4.03135130206576	-0.820953136068216	0.0574909285620179	0.251653525222539
Merged-chr9-99563853-4	chr9	99563746	99563946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 1 of 21)	intron (NM_028768, intron 1 of 21)	5053.0	NM_001166138	74125.0	Mm.234823	NM_028768	ENSMUSG00000032468	Armc8	1200015K23Rik|Gid5|HSPC056	armadillo repeat containing 8	protein-coding	5.73081923839578	5.69583192972764	6.02229643254987	6.17785688152694	6.29307277564725	6.08577419366494	6.20827213009851	6.23580761263805	0.41894881634882	0.0996332984386318	0.346218223703981
Merged-chr13-47038206-3	chr13	47038112	47038312	+	937.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016785, intron 3 of 8)	intron (NM_016785, intron 3 of 8)	5005.0	NM_016785	22017.0	Mm.10169	NM_016785	ENSMUSG00000021376	Tpmt	AW106912	thiopurine methyltransferase	protein-coding	3.48458612862637	3.49697258611385	3.86569873521798	3.21620887098701	4.6062439502988	4.24896949381775	4.38366930327781	4.50855230190944	2.62495321607725	1.35310475789933e-08	7.01475918153799e-07
Merged-chr3-116122944-4	chr3	116122857	116123057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 4 of 8)	intron (NM_011693, intron 4 of 8)	6731.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	5.93985440189575	5.69751824999832	6.12117076511399	6.58317956446776	5.37843854754395	5.27236819896932	5.51083073248771	5.82414761294912	-1.03087493379097	0.00108445091461137	0.014350475568381
Merged-chr7-81829552-4	chr7	81829442	81829642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146193)	promoter-TSS (NM_146193)	-111.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	7.14518218003239	7.35365901409548	7.01729802548297	7.05848963953246	6.65897257725269	6.94992622650933	7.04198908143041	6.8822300941735	-0.368329925232344	0.0710662344920103	0.285932131515863
Merged-chr7-98415665-4	chr7	98415558	98415758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24758.0	NM_001130693	14918.0	Mm.389928	NM_001034890	ENSMUSG00000074003	Gucy2d	-	guanylate cyclase 2d	protein-coding	6.80309365682465	6.81942207855127	6.60753418875157	6.61390083692024	6.36318404305661	6.47586663386743	5.96165520723669	6.23423018897904	-0.640943342080834	0.00495678399129212	0.0472440985158251
Merged-chr3-40711175-1	chr3	40711075	40711275	+	590.0	f0_balb.idr	intron (NM_178386, intron 1 of 5)	L1_Mus3|LINE|L1	2304.0	NM_178386	73333.0	Mm.78691	NM_178386	ENSMUSG00000069041	Slc25a31	1700034J06Rik|Ant4|Sfec	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	protein-coding	3.38984009111433	3.46736499230544	3.49107622168456	2.9687949322354	3.08773005233703	3.45299874375534	2.87838557062944	3.02931142903903	-0.808672360624129	0.195174248885835	0.495943926980143
Merged-chr2-22589755-4	chr2	22589663	22589863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32564.0	NM_008078	14417.0	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding	9.42525363206955	9.2879302329214	9.90747667879937	3.70080125848763	9.53393651578043	9.51022862249745	9.52271069656011	9.15331677561111	0.259521031413157	0.849719084536085	0.943235624562459
Merged-chr15-66555560-4	chr15	66555453	66555653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172514, intron 3 of 9)	intron (NM_172514, intron 3 of 9)	5493.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	5.95288177293067	6.11671411513619	5.74983098034106	6.64104847376899	6.3167181186789	6.13138752260082	6.1966678083593	6.29781008162898	0.0809428162948706	0.775892538852859	0.912589557408825
Merged-chr5-130255004-2	chr5	130254904	130255104	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178897)	promoter-TSS (NM_178897)	526.0	NM_023248	66711.0	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	SBDS ribosome maturation factor	protein-coding	3.64353123221043	3.9877496599993	3.98098443189695	3.69638463241385	3.94300708090041	4.05478145397479	4.01190863248116	4.59394333633356	0.915457338934498	0.047082395518933	0.22323993009873
Merged-chr8-40986301-3	chr8	40986178	40986378	+	808.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026840, intron 4 of 5)	intron (NM_026840, intron 4 of 5)	-31190.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	3.24919727177415	2.91220614874118	3.4655332839048	3.12672201241908	3.33528801524966	3.47716704244356	3.23737812683662	3.24790874470776	0.476650600163326	0.397068149362201	0.695582639384034
Merged-chr1-193128347-2	chr1	193128247	193128447	+	659.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151719, exon 3 of 12)	non-coding (NR_151719, exon 3 of 12)	1904.0	NM_145415	215193.0	Mm.173758	NM_145415	ENSMUSG00000016181	Diexf	AA408296|AW045375|Def	digestive organ expansion factor homolog (zebrafish)	protein-coding	3.19887502028047	3.08371832163349	3.19931058872644	2.93268482599899	3.1766007859827	3.19286238251653	3.18671542549029	2.9528266491652	0.13659127883722	0.810193099443094	0.92679579587174
Merged-chr6-134635435-4	chr6	134635348	134635548	+	993.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2960.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	5.17355146379304	5.54106287286356	4.91510717908794	5.62736651015525	5.17019776681409	5.21122524701653	5.70546862101815	5.2040104270937	-0.0390247617300404	0.908603266799273	0.966100563913989
Merged-chr17-83708002-3	chr17	83707917	83708117	+	869.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 1 of 16)	B1F1|SINE|Alu	1854.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	3.46593300407233	3.07720275225808	3.16814791444864	3.58319057856146	3.37404768972336	3.40879463743922	3.39868063117494	3.70580319922816	0.424938030273319	0.44928517812069	0.734489427961704
Merged-chr4-47353127-4	chr4	47353027	47353227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009370)	promoter-TSS (NM_009370)	-95.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	9.26244022311293	9.14106825292376	9.23695661177307	9.23548842601073	9.20366608050143	9.28453223459256	9.50483624846954	9.04970669937506	0.0630702732230337	0.681969302623042	0.869682098720609
Merged-chr11-114571348-4	chr11	114571240	114571440	+	967.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97203.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	4.69186276961596	4.11309203604715	4.23370023928779	4.47968936911861	4.72241074435286	4.31008338203166	4.59862564305192	4.61752500388433	0.396512072172854	0.312563894989852	0.624504855620566
Merged-chr1-164060251-4	chr1	164060145	164060345	+	949.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B2|LTR|ERVL	-1831.0	NM_001164059	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	4.63865282841112	4.51581425407828	4.75916732512064	4.50289448037968	4.99248227511857	5.13992843383191	4.8793293877022	4.82998092077716	0.763075830793389	0.0214090713437314	0.133954454394807
Merged-chr18-54992600-4	chr18	54992491	54992691	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360787)	promoter-TSS (NM_001360787)	0.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	5.3964926810104	5.31143428389176	4.82381320147301	4.94008173908799	5.31956423043094	5.23286158695347	5.37025078074528	5.3381620995368	0.3454321573948	0.269193218402418	0.580753412406101
Merged-chr7-34266194-4	chr7	34266087	34266287	+	857.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172741, intron 1 of 12)	intron (NM_172741, intron 1 of 12)	19422.0	NM_172741	233103.0	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	3.78493234322416	3.84061308875309	3.94842489624554	3.81324266454487	4.1039146712637	4.01935263468087	4.5252488954587	4.09080979836414	0.939733793562737	0.0283076421434684	0.161244371009118
Merged-chr9-50946536-2	chr9	50946440	50946640	+	662.25	f0_balb.idr|f0_c57.idr	intron (NM_178710, intron 3 of 15)	intron (NM_178710, intron 3 of 15)	62533.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	3.59760658147347	3.92890272366133	3.65396235795121	3.98465917144654	3.68196885788986	3.59337175266993	3.83937682602671	3.59620567360259	-0.398694668359468	0.407242893896941	0.703586879884121
Merged-chr8-84567689-4	chr8	84567595	84567795	+	928.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007578, exon 21 of 47)	exon (NM_007578, exon 21 of 47)	95157.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	6.55502844732628	6.30098807250656	6.8944480492652	6.88941855834192	4.8772922219175	5.00467317016905	5.14205202706758	5.08167302513483	-2.78272469963783	4.51427153863892e-21	1.75585428332666e-18
Merged-chr5-113773933-4	chr5	113773854	113774054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025526, intron 1 of 4)	intron (NM_025526, intron 1 of 4)	1142.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	7.48064141921263	7.74625048755887	7.73127632739086	7.21535776773481	7.53908323880974	7.8526094668779	7.4161664110809	7.5859854781883	0.0706359404791049	0.732492108487245	0.893963778565797
Merged-chr10-43123619-4	chr10	43123515	43123715	+	947.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175407, intron 4 of 6)	Lx6|LINE|L1	50915.0	NM_175407	109205.0	Mm.153750	NM_175407	ENSMUSG00000038248	Sobp	2900009C16Rik|5330439J01Rik|JXC1|jc	sine oculis binding protein	protein-coding	4.92927334959658	4.453998669763	4.93009766656157	5.59269089867759	4.7051082110543	4.7863818447893	4.97566753814107	5.35050453393825	-0.159674570338649	0.70214630102349	0.880019572484699
Merged-chr2-59425831-4	chr2	59425781	59425981	+	848.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39199.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	3.59901526975018	3.57292661598715	3.85888390177542	3.84206500936024	3.62668025410681	3.65699502525553	3.84215356491777	3.90256066215668	0.0809709585866738	0.863297453841864	0.948574397453072
Merged-chr19-4442606-2	chr19	4442506	4442706	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045989, intron 1 of 4)	intron (NR_045989, intron 1 of 4)	3047.0	NR_045989	319314.0	Mm.393810	NR_045989	ENSMUSG00000087132	A930001C03Rik	-	RIKEN cDNA A930001C03 gene	ncRNA	3.14495477344386	3.19298441322856	3.1453447230008	2.84337658804664	3.56901573651712	3.31893313696495	3.35718295890999	3.01442877320755	0.969394116900785	0.0947965810457568	0.336870108015143
Merged-chr6-8420250-4	chr6	8420135	8420335	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302353, intron 4 of 4)	intron (NM_001302353, intron 4 of 4)	88926.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	5.1864090731736	5.67976192528095	6.22786484558721	6.30834897781017	5.08749100158113	5.21577779473708	5.19705710063105	5.52167541651101	-1.18917029983756	0.000868473929110228	0.0120290145553876
Merged-chr11-70805238-11	chr11	70805157	70805357	+	962.0575560000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 1 of 4)	intron (NM_001045526, intron 1 of 4)	7304.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	4.36981136282953	4.45831119810215	4.03423504260078	4.20304461753687	4.04844435874213	4.41136765319606	4.30792433782507	4.69992752954351	0.254352578179366	0.541507048107268	0.793272720948538
Merged-chr8-64726501-4	chr8	64726376	64726576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025436, intron 2 of 5)	intron (NM_025436, intron 2 of 5)	7102.0	NM_025436	66234.0	Mm.30119	NM_025436	ENSMUSG00000031604	Msmo1	1500001G16Rik|C78600|DESP4|ERG25|Sc4mol	methylsterol monoxygenase 1	protein-coding	5.74725408018697	5.64159524748641	6.05904854380042	5.75605218003499	5.04611747504781	5.66431051252566	5.51644374947039	5.36302845545811	-0.687709978862929	0.0196809492742995	0.126596496977365
Merged-chr2-51149189-4	chr2	51149078	51149278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028810)	promoter-TSS (NM_028810)	-67.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	6.92839952556935	7.22514280133019	6.42841370022326	7.0719227523601	6.91373307406468	7.06690532086816	7.0739956578753	6.38486533091139	-0.0898893789828862	0.727603231146229	0.891575922190683
Merged-chr4-105162866-4	chr4	105162748	105162948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 1 of 5)	intron (NM_080555, intron 1 of 5)	5501.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	5.48206626545718	5.42723999409414	5.51146350781135	5.86950231005771	5.30801579292337	5.74100343593855	5.64119694346082	5.71454772252889	-0.00388489920381243	0.989420736977874	0.995743897483961
Merged-chr14-61310567-4	chr14	61310467	61310667	+	950.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177337, intron 1 of 1)	intron (NM_177337, intron 1 of 1)	814.0	NM_177337	219144.0	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	5.62181746877515	5.58715190648788	5.41034498036211	5.74875288675853	5.57060259704266	5.02212001216469	4.94231817530723	5.49040863025794	-0.534310201624756	0.0907498558872599	0.329112141040367
Merged-chr6-120156062-4	chr6	120155956	120156156	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-37767.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	4.98661042291341	4.9836999424282	4.95411740019161	4.68686130435537	4.92745240297723	4.78474020287842	4.89620354272794	4.80808981037447	-0.068026489042776	0.836296976894292	0.937710220670103
Merged-chr2-46371930-2	chr2	46371828	46372028	+	615.166626	f0_balb.idr|f0_c57.idr	Intergenic	L1M3c|LINE|L1	675323.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	3.70778732212111	3.65432882436459	3.6030022198312	3.61473430506503	3.94383986059844	3.47623371310597	3.64215957955964	3.65470045660457	0.182417223955294	0.704234398799246	0.88119364106762
Merged-chr6-58990577-3	chr6	58990485	58990685	+	896.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153574, intron 2 of 17)	intron (NM_153574, intron 2 of 17)	33917.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	3.20601722420847	2.98941525805323	3.31325995567846	3.3121651296773	2.87702012238148	3.13681698800478	3.01740232704538	3.14783433725951	-0.691900570229067	0.237197411907136	0.547347292424886
Merged-chr4-59033576-1	chr4	59033476	59033676	+	839.5	f0_balb.idr	Intergenic	Intergenic	-1580.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	3.08141153607654	2.94658805201109	2.75249749027249	3.11479149558939	2.33606801500088	2.4159813300989	2.39125408038615	2.54891148111194	-3.86891886075099	0.000107463546575811	0.002157120073807
Merged-chr13-34709167-4	chr13	34709052	34709252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30490.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	6.89119210572753	6.91972403898142	6.78851180361572	6.54669719065447	6.37981346401142	6.47590816096472	6.65576705881145	6.14501634661269	-0.520333354062158	0.0236552473532026	0.142982069578262
Merged-chr13-101761874-4	chr13	101761789	101761989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	6328.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	5.8428775688888	5.84737847622233	6.15735972572863	5.8079791537049	5.91132773663495	5.86970152128756	6.01026498210415	5.66193998987323	-0.06475569345503	0.799139821891925	0.922434438357924
Merged-chr12-55493497-2	chr12	55493397	55493597	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010907)	promoter-TSS (NM_010907)	-850.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	3.22309296944382	3.48366831943125	3.81231542523213	3.21109789718032	3.42641867701828	3.46734371984541	3.56221818625285	3.62572841289694	0.245820249547522	0.646505822065396	0.851366985708531
Merged-chr16-31898496-3	chr16	31898396	31898596	+	922.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013900, exon 16 of 16)	3' UTR (NM_013900, exon 16 of 16)	19686.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	3.87775335801568	3.89728021364846	3.6376170053422	3.82758022243707	3.40390863379902	3.45541874363672	3.45563623046854	3.52515851979592	-1.1671290747581	0.0175566638051282	0.117161623172463
Merged-chr17-5220629-4	chr17	5220495	5220695	+	995.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	198172.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	4.57226165634555	4.69033133277305	4.80773577995662	5.13611869006472	4.69984645413629	4.46864873233382	4.74889834532001	4.768332883765	-0.338142255568158	0.355181004450166	0.661813745489821
Merged-chr10-78228385-3	chr10	78228284	78228484	+	752.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081055, intron 3 of 22)	intron (NM_001081055, intron 3 of 22)	16258.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	3.41215823293467	3.54979324183555	3.2980674470392	3.63206735814988	3.37527654948566	3.28225938480894	3.28658469788915	3.35489006023494	-0.570229878504752	0.277176803345796	0.589300206200641
Merged-chr3-27192444-4	chr3	27192344	27192544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	9440.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	5.72499053713589	5.89881952936524	6.15765945893038	6.30024896757482	5.80888756314631	5.41388224547312	5.84176845941994	5.58642771177006	-0.599466148254166	0.032624358906596	0.176978666607601
Merged-chr4-130816114-4	chr4	130816015	130816215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	23578.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	5.42580946320831	5.06600508660267	5.56060656471214	5.4185575896829	5.28041715837231	5.42082648670829	5.55743471908303	5.45086010571429	0.0824204156865458	0.776824023241225	0.913015118902433
Merged-chr19-45154639-3	chr19	45154525	45154725	+	699.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021901, intron 2 of 2)	intron (NM_021901, intron 2 of 2)	3910.0	NM_021901	21908.0	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	3.86743868722858	3.57940499456007	3.69448796677412	3.16489427473835	3.29956189365698	3.55483231671708	3.10821775475396	3.18621018902464	-1.02892799666386	0.0797277926957899	0.305763270028097
Merged-chr8-108315334-4	chr8	108315238	108315438	+	754.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	269339.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	3.96409526590727	4.09287771351058	3.80360417582033	3.87685924494665	4.30121322120607	4.08726791076847	3.9972101564659	4.19254965729471	0.581051373139334	0.164642407905451	0.454857412857991
Merged-chr6-113045692-4	chr6	113045590	113045790	+	789.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355266)	promoter-TSS (NM_001355266)	-612.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	4.49923842529217	4.16313334262231	3.87622026837878	4.37150190861843	3.84260659846547	4.05552072188471	4.06985221793892	4.34792277629978	-0.424851116534187	0.339401631099648	0.648737202156065
Merged-chr6-84583580-4	chr6	84583481	84583681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177713, intron 3 of 6)	intron (NM_001177713, intron 3 of 6)	10229.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	6.80594551186041	6.89725542020275	6.60420140790797	6.67768726693152	6.66394622634504	6.52070114977234	6.61660658755445	6.15120711877591	-0.344622651856272	0.125178487289369	0.392687507570294
Merged-chr19-42005775-4	chr19	42005647	42005847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	L3|LINE|CR1	23984.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	6.75475603028373	7.0632709485466	6.95552309114215	6.90603729782475	6.46772653618489	6.62500801823093	6.79138243164393	6.54819837030645	-0.451920419635933	0.028796607313067	0.163024057552824
Merged-chr16-28911250-4	chr16	28911156	28911356	+	916.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177718, intron 1 of 1)	intron (NM_177718, intron 1 of 1)	18442.0	NM_177718	239796.0	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	4.3775511094987	4.49587980183489	3.98595284163137	3.98369879698885	4.66315195527902	4.46439019586492	4.12952904770736	4.53420916810217	0.579446760405392	0.168238685335495	0.460191392541484
Merged-chr3-103728147-4	chr3	103728078	103728278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9823.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	5.63388882916248	6.09534510596097	5.51276709267452	5.82952769617939	6.34570697604904	6.3674850029687	6.30242433863162	6.13087220947877	0.76793121939372	0.00258554748471571	0.0284490159861771
Merged-chr3-9004554-4	chr3	9004386	9004586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357072)	promoter-TSS (NM_001357072)	237.0	NM_009412	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	7.15409492876886	6.84256019477216	6.89311375107771	6.38546504530524	7.13357569605244	7.33229052641037	7.48629163809826	7.44047317952215	0.715572875481271	0.00191693561578357	0.0226202851783586
Merged-chr6-129495096-4	chr6	129494992	129495192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138648, intron 4 of 7)	MT2A|LTR|ERVL	12073.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	7.2152954875989	7.36273390339744	6.85964120007828	7.15652312721714	6.9458276542374	6.71014943519677	6.67963698321187	6.43427086241356	-0.625471975470015	0.00476912379555198	0.0458737106338105
Merged-chr12-54985801-4	chr12	54985708	54985908	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 1 of 26)	CpG-3178	528.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	5.0141862160277	5.09172759594385	4.47273590917764	4.51584686101004	5.01992848713249	5.15420302645521	4.45310751549129	4.73026549672432	0.144951190770217	0.712415013191656	0.884871428029492
Merged-chr1-162574761-4	chr1	162574644	162574844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356527, intron 2 of 7)	intron (NM_001356527, intron 2 of 7)	3916.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	5.98491191986605	5.99568906022161	5.48516298808758	6.17037143949431	5.76068716343805	5.43325902394161	5.70610105780371	5.87392977939374	-0.390870647559031	0.168607149247276	0.460861267857296
Merged-chr5-34762342-4	chr5	34762257	34762457	+	978.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010414, intron 1 of 66)	intron (NM_010414, intron 1 of 66)	617.0	NM_010414	15194.0	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	4.52110245657204	4.79710648765778	4.29362662277577	4.52718489194889	4.40992385698141	4.69503576701817	4.61974284574077	4.71242359439683	0.126257770085089	0.732217122916852	0.893952343664963
Merged-chr1-135719663-3	chr1	135719560	135719760	+	905.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360782)	promoter-TSS (NM_001360782)	-403.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	3.89768490026895	4.13256098173554	3.84635586075356	3.84321230087416	3.98797545327802	3.66946428750951	3.77745410821504	4.35871647092315	0.12258041486229	0.793392721484655	0.919993817974655
Merged-chr13-115097161-4	chr13	115097043	115097243	+	928.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033228, intron 1 of 28)	intron (NM_001033228, intron 1 of 28)	4821.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	4.41862361437785	4.0086622536881	4.91626222031257	4.9373635831421	4.5024979198949	4.55103212162742	4.86009657168476	4.81433546122543	0.116217814014405	0.787578519405614	0.917631916858002
Merged-chr12-84361924-4	chr12	84361814	84362014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172581)	promoter-TSS (NM_172581)	-54.0	NM_172582	217707.0	Mm.280062	NM_172582	ENSMUSG00000021235	Coq6	5930427M12Rik|AW742344	coenzyme Q6 monooxygenase	protein-coding	8.20924182250959	8.57744840163655	7.8446165398343	8.21663632843498	8.54061377430935	8.42375348586606	8.19550754561532	8.23473174116898	0.150089780980239	0.448658634922374	0.733878953633932
Merged-chr11-65794999-3	chr11	65794897	65795097	+	771.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-6638.0	NM_001316367	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	3.33747970924423	3.06605077730376	3.16817588046249	3.22705208137674	3.53734454318746	3.21589958905231	3.09602841816221	3.16662198870867	0.268117454394404	0.633254847552818	0.844533590533651
Merged-chr19-36928555-2	chr19	36928455	36928655	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080706, intron 1 of 37)	intron (NM_001080706, intron 1 of 37)	2476.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	3.24166246831361	3.21887795202946	3.18445555525239	2.79038224987649	3.27485458813847	3.2973003533152	3.17241023657877	3.1827712932708	0.477613254827065	0.410229201023869	0.705630707321669
Merged-chr11-48838603-4	chr11	48838481	48838681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347446, intron 1 of 6)	intron (NM_001347446, intron 1 of 6)	1110.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	5.28515183481702	5.13706451127625	4.75099355400818	4.90591335282886	4.73915951291964	5.25131025985661	4.95468467578396	4.90395207579402	-0.124628051811833	0.714828251871978	0.886003030420421
Merged-chr13-112792157-4	chr13	112792071	112792271	+	985.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8606.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	5.04883479307155	5.15707870359918	4.54590323592863	4.92055810203454	5.79293884382172	5.15528749245882	5.35768190745966	5.08061364294119	0.836915726951738	0.0169162942934201	0.114217515798363
Merged-chr12-100422687-3	chr12	100422574	100422774	+	944.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	98148.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	4.14686711802942	3.85059573060762	4.06168995858579	4.25943994975172	3.2844632661301	3.70394892128045	3.69180620509311	4.18557529187233	-0.951310894850723	0.0712409053739461	0.286391980323738
Merged-chr3-130709330-4	chr3	130709204	130709404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025509, exon 1 of 4)	exon (NM_025509, exon 1 of 4)	140.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	7.0484070324116	6.77602491499017	7.2060705812445	7.09186401970399	6.83568218153881	7.00593240703679	6.76571338092839	6.93274224494473	-0.215731688691926	0.285246207699731	0.596955868770328
Merged-chr18-38418872-4	chr18	38418798	38418998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022996)	promoter-TSS (NM_022996)	-9.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	7.15549863378634	7.15095837584317	7.20158072527783	7.15209198646258	7.35511920918862	7.01116973866935	7.33911740060686	6.99424959839426	0.041986268322314	0.827698284918517	0.933903677361406
Merged-chr2-69861591-4	chr2	69861501	69861701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355265)	promoter-TSS (NM_001355265)	39.0	NM_009278	20823.0	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding	6.96872445094338	6.76663060669844	6.36636992467115	6.81844962347365	7.07142542997731	6.71123759125377	6.99441936680341	6.79419618336816	0.218165433513729	0.327862486969902	0.639190489551923
Merged-chr10-8811926-3	chr10	8811820	8812020	+	832.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 4 of 19)	L1MC4|LINE|L1	74150.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.50997668838823	3.47638141155122	4.43720638805119	4.36069916824657	3.16621055328961	3.05722007270285	3.16947267413139	3.10207852625024	-3.2768287816114	3.45480132088662e-06	0.00010654649186282
Merged-chr7-128611202-4	chr7	128611114	128611314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178641)	promoter-TSS (NM_178641)	-151.0	NM_178641	101490.0	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	8.70301962365297	8.92354737020518	8.52142584765371	8.50528557528371	8.70434702080496	8.71881126495754	8.66477168040972	8.39177110923739	-0.0565999839227403	0.742838601187427	0.898691548174051
Merged-chr19-6046963-4	chr19	6046850	6047050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164709)	promoter-TSS (NM_001164709)	-195.0	NM_001164709	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	6.09967758125063	6.34619732003453	6.01706602893677	5.85471176726472	6.1009267602976	6.00812660886255	5.77628927631723	6.13620429224143	-0.103299507672312	0.686578862782196	0.871791156750699
Merged-chr15-76091712-4	chr15	76091597	76091797	+	964.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358359)	promoter-TSS (NM_001358359)	-7.0	NM_001358359	223649.0	Mm.101946	NM_144847	ENSMUSG00000075590	Nrbp2	BC011468	nuclear receptor binding protein 2	protein-coding	5.90458555895795	5.39971555572609	5.48649812796951	5.68028138547695	5.51471174875279	5.28232135386206	4.96215186823739	5.50997530052458	-0.501625196408458	0.103349255036314	0.353243535377182
Merged-chr3-22073322-4	chr3	22073245	22073445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-3307.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	6.62019015248737	6.49430669597316	6.69426804714671	6.77159987434982	6.22039335607282	6.45533336318944	6.30350710914676	6.29314738627658	-0.502564723678718	0.0197659389472907	0.127075107138955
Merged-chr5-149690532-1	chr5	149690432	149690632	+	801.0	f0_balb.idr	intron (NM_001081204, intron 1 of 14)	intron (NM_001081204, intron 1 of 14)	12275.0	NM_001081204	381694.0	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	2.84329504568036	2.69188923223172	2.90078688363986	3.02086204636977	2.51205736071912	2.53771775892585	2.88903573116443	2.51197086070414	-1.26551529083128	0.0740619085523919	0.293227978020397
Merged-chr6-108825152-4	chr6	108825018	108825218	+	952.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3523.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	4.83121811895858	4.45555176558785	4.73139741597432	4.52961895593383	4.54131940283431	4.54560838097425	4.2555855315745	4.41267596944144	-0.422274576520891	0.257245139582287	0.568977947516389
Merged-chr8-85013428-4	chr8	85013329	85013529	+	955.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_052011, exon 2 of 10)	non-coding (NR_052011, exon 2 of 10)	979.0	NM_001130194	212989.0	Mm.215154	NM_001130194	ENSMUSG00000052819	Best2	Vmd2l1	bestrophin 2	protein-coding	4.47973610899639	4.39083155179546	4.17039849698967	4.2495778784389	4.59642846822056	4.13554494319538	4.49793532938749	4.39646893816622	0.245518207835064	0.527792146886586	0.784574591591773
Merged-chr7-101311369-5	chr7	101311342	101311542	+	945.1333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5644.0	NM_001360460	56018.0	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	3.75739615738017	3.83381390944933	3.64569574674874	3.36784047194313	4.02389978371631	3.57601822764761	4.02733486965838	4.24157661030407	0.972849813124962	0.0463564295405521	0.221282320192891
Merged-chr17-46074090-4	chr17	46073984	46074184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36920.0	NM_026768	68565.0	Mm.287443	NM_026768	ENSMUSG00000023967	Mrps18a	1110004O20Rik|C79712	mitochondrial ribosomal protein S18A	protein-coding	5.79673870044815	5.66197470024268	5.47034358738471	5.56962708964926	5.45816133898636	5.42962729600213	5.498886986413	5.57650637573594	-0.231294323765468	0.388265297042274	0.688915268263078
Merged-chr17-34313576-4	chr17	34313452	34313652	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010382, intron 2 of 5)	intron (NM_010382, intron 2 of 5)	7685.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	4.6522979294322	5.18855876709673	4.21798023975859	3.94042849361894	5.20732711440749	4.87060560733582	4.88939419200031	4.91041819068838	0.78878795787517	0.078545430000701	0.303250441707962
Merged-chr9-118646011-4	chr9	118645916	118646116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	39307.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.23041259155332	7.15665661921173	7.9429165647981	7.48061614650522	6.75272509690057	6.78186762183704	6.87953473757532	7.05363807252175	-0.845204245671254	0.000304179216094259	0.00513304230023074
Merged-chr3-138118929-3	chr3	138118825	138119025	+	900.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001355052, intron 7 of 21)	intron (NM_001355052, intron 7 of 21)	12728.0	NM_008642	17777.0	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	4.51697555082754	4.7947195836032	4.72288199278244	4.8937839507329	4.88095392988247	4.89494813969766	4.70068079685385	4.32410033650912	-0.053511774577318	0.88403332675227	0.956390337098447
Merged-chr15-13391552-4	chr15	13391437	13391637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-217862.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	5.80338458979973	5.57056307125942	5.23539946969012	5.6476973693718	5.70044784181928	5.34448220682238	5.42750509513101	5.45090855869758	-0.147386866025638	0.611281457342816	0.832251855180034
Merged-chr7-130969244-2	chr7	130969144	130969344	+	890.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019564, intron 3 of 8)	intron (NM_019564, intron 3 of 8)	33041.0	NM_019564	56213.0	Mm.30156	NM_019564	ENSMUSG00000006205	Htra1	AI429470|HTRA|L56|Prss11|RSPP11	HtrA serine peptidase 1	protein-coding	3.44893804331052	3.17510067941133	3.44938053373528	3.53291718223653	3.33479563552029	3.62183211225027	3.93939963652792	3.70798520997614	0.825689222561153	0.122577023979528	0.388049723796427
Merged-chr6-147476172-6	chr6	147476075	147476275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355713)	promoter-TSS (NM_001355713)	-190.0	NM_001355713	67015.0	Mm.209774	NM_025911	ENSMUSG00000030301	Ccdc91	1700086G08Rik|1810060J02Rik|AU045683|AW555238|p56	coiled-coil domain containing 91	protein-coding	6.0684483420696	5.63833837741263	6.49580089107258	5.70065770380883	5.90440456359273	5.89849917066413	5.88821559231094	6.08532507747654	-0.0989928048339804	0.735501451342384	0.895614633816326
Merged-chr8-26699718-2	chr8	26699618	26699818	+	745.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124705.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	2.44396135456194	2.38193402770244	2.51504791537374	2.32346326531899	2.85256311606154	2.75364256409263	2.6365081436803	2.64498501425678	1.70832827573725	0.011035622675841	0.0846719224458251
Merged-chr10-69218597-4	chr10	69218479	69218679	+	796.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	5385.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	3.46989699794258	3.2998335939128	3.52688222345817	3.71408106143767	3.47970787390074	3.52572524714097	3.56667219192673	3.86238502636701	0.292546412620263	0.568740414678086	0.808984112555135
Merged-chr4-84372629-4	chr4	84372520	84372720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172870, intron 4 of 5)	PB1D7|SINE|Alu	302466.0	NM_172870	242509.0	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	5.7815145117602	5.27614601258083	5.47692457977897	6.02760232524247	5.43610844449752	5.36740902768656	5.61042422870413	5.60940570298664	-0.309554505138207	0.31391343623481	0.625918664288127
Merged-chr4-152325770-4	chr4	152325673	152325873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102292)	promoter-TSS (NR_102292)	47.0	NR_102291	19934.0	Mm.307846	NM_009079	ENSMUSG00000028936	Rpl22	2700038K18Rik	ribosomal protein L22	protein-coding	8.47454482062969	8.57189838540321	8.33564162846036	8.14958455770204	8.33432056804956	8.64887410671501	8.45124952778889	8.07491218266497	0.00489656864383667	0.979163836097391	0.992606608380485
Merged-chr3-88142327-4	chr3	88142245	88142445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133665)	promoter-TSS (NM_133665)	-27.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	8.18838286741371	8.23653328888648	8.35963551749195	8.13786238540529	8.30890999452322	8.2124046789909	8.34674688522058	8.34888392202695	0.098730647160276	0.518674595827368	0.779675989312394
Merged-chr2-117852634-4	chr2	117852535	117852735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040631, intron 2 of 5)	intron (NR_040631, intron 2 of 5)	30707.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	6.32224391984028	6.48279406478842	6.26536204280367	6.49642020849342	6.55152791349968	6.15831053561629	7.04416865963001	6.24095302089946	0.220892193513122	0.406252871719764	0.702804245383133
Merged-chr14-73146943-4	chr14	73146872	73147072	+	888.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033185, intron 1 of 15)	RMER6A|LTR|ERVK	4187.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	4.3459914542121	4.53074195544708	4.25025842739109	4.39640153661435	4.7692465210167	4.80634355466594	4.49948689751783	4.3895835339509	0.546427544621592	0.140661846778067	0.417156351477691
Merged-chr8-110847501-1	chr8	110847401	110847601	+	765.0	f0_balb.idr	promoter-TSS (NM_133953)	promoter-TSS (NM_133953)	477.0	NM_133973	102339.0	Mm.272930	NM_133973	ENSMUSG00000031753	Cog4	AW554810|D8Ertd515e	component of oligomeric golgi complex 4	protein-coding	3.6252846495115	3.48698957290984	3.20718184089137	3.68148747103422	3.37796733705332	3.57797157541913	3.50541685316308	3.89792919935787	0.256344390525821	0.630823710746628	0.843092134650836
Merged-chr5-64102770-3	chr5	64102664	64102864	+	941.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025700, intron 3 of 13)	ID|SINE|ID	9825.0	NM_001356964	66681.0	Mm.2325	NM_025700	ENSMUSG00000029171	Pgm1	3230402E02Rik|Pgm-1|Pgm2	phosphoglucomutase 1	protein-coding	4.36632023658785	4.14408469365314	4.60626951385328	5.01464658718783	3.99446314464027	4.25443000263431	4.10985977353257	4.5663386135844	-0.802237339798969	0.0760666429511916	0.2978645095615
Merged-chr6-97829330-5	chr6	97829271	97829471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	22313.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	5.65142426632112	6.14163754680736	5.38808672990653	5.12165754831938	5.90547438849173	6.34098514979313	5.56976325388579	5.70037734786268	0.461325022260846	0.181282447294189	0.47780135214223
Merged-chr16-3122998-3	chr16	3122888	3123088	+	796.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-469410.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	3.3898492105149	3.47642204352329	3.26020827544431	3.15946106214896	3.52175317395105	3.68389738589749	3.99758972495889	3.7634194266445	1.40903044727547	0.00537691752744186	0.0501143921285563
Merged-chr11-117828420-4	chr11	117828322	117828522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027827, intron 2 of 10)	URR1B|DNA|hAT-Charlie	-2408.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	6.90839408902806	7.0676825372296	6.52206105334595	6.25325076761246	7.19555548482078	6.8626412730776	6.92458306215299	6.48203919389617	0.25107509541337	0.351392552010565	0.658828639225582
Merged-chr1-144004245-4	chr1	144004151	144004351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009061)	promoter-TSS (NM_009061)	-102.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	9.1186790021014	9.25987182587538	9.13657115019142	9.23610195424729	9.22682800309664	9.38793160182741	9.58350762178965	9.11114101066428	0.18236277460441	0.249427694209294	0.560452485830019
Merged-chr10-69247518-4	chr10	69247427	69247627	+	895.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	34333.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	4.7766812626526	4.70080675342017	4.69948149213299	4.94424310928968	4.79373574134922	4.7499630992524	4.75499171569019	5.10467748338027	0.123507210432245	0.715177267651921	0.886010584897636
Merged-chr2-75683095-4	chr2	75682980	75683180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010902, intron 1 of 4)	intron (NM_010902, intron 1 of 4)	21583.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	6.97263468470897	7.47361930029384	6.97385358511112	7.18317996887185	6.75985996964091	6.8346303619481	6.7318886701801	7.01890288328603	-0.463632244329551	0.0295435914547495	0.165542257431915
Merged-chr14-55106595-4	chr14	55106464	55106664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303502)	promoter-TSS (NM_001303502)	29.0	NM_001303502	11766.0	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	6.23194034670468	6.41547118177496	6.04672714519984	6.18408056372189	6.0988397103793	5.95461903995449	6.50543110423619	6.48821048359738	0.0826035207735415	0.741663247985258	0.898344123279219
Merged-chr1-4867751-4	chr1	4867643	4867843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159750, intron 2 of 9)	RMER6B|LTR|ERVK	9415.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	6.55123371030305	6.6050238876525	6.36520766823887	5.92512985840011	6.88202213793361	6.4474588409366	6.60984779445795	6.28510409752395	0.307430949647975	0.24772801949925	0.558891686210368
Merged-chr2-105674578-3	chr2	105674493	105674693	+	750.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001244198, intron 1 of 12)	intron (NM_001244198, intron 1 of 12)	-1151.0	NM_001244200	18508.0	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	2.8670121997201	3.06503729940194	3.23334190502503	3.08904607606084	3.1280018026578	3.10946420523473	3.05238379000865	3.17736406924498	0.18714798438806	0.741992479680048	0.898417179766546
Merged-chr8-4214551-4	chr8	4214439	4214639	+	980.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_207203, exon 6 of 7)	exon (NM_207203, exon 6 of 7)	2773.0	NM_207203	73072.0	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	5.23579501259125	4.81850254293519	5.50361848635894	5.22338595202392	4.96834098212147	4.95546542347751	5.18076920031135	5.07488075157038	-0.317374660968299	0.329678112662256	0.641029267112484
Merged-chr13-97573271-4	chr13	97573185	97573385	+	890.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046157, intron 2 of 2)	intron (NR_046157, intron 2 of 2)	13285.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	4.95677290159736	4.57991880751024	4.79373581976009	4.50278879654261	4.63581436402144	4.6968632325632	4.21447167462064	4.79049376373236	-0.228278798117067	0.548556467882108	0.797514668901371
Merged-chr6-136656443-4	chr6	136656345	136656545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	5448.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	5.84158719988383	6.11597190414139	5.95311650584669	6.4433658764867	5.40281479466928	5.70873793634815	5.53113645718343	5.15395935632273	-1.09715483907736	0.000166030530551426	0.00311406775602633
Merged-chr16-44762071-4	chr16	44761942	44762142	+	881.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3694.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	4.39200312092773	4.24613689597621	4.47392023231991	4.2486051849749	4.46256504793675	4.18453285676603	4.56472433965194	4.25764073357181	0.112311953365466	0.77070395578721	0.910265273875382
Merged-chr2-124755446-4	chr2	124755348	124755548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101867.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	6.40741245797842	6.63378423286718	6.6103442144193	6.94245423103333	6.62825052640156	6.49159837644812	6.46340943606364	6.52549534868721	-0.215458251155499	0.3400197021503	0.649078099444502
Merged-chr13-119366645-2	chr13	119366545	119366745	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308506, intron 11 of 16)	L1MEb|LINE|L1	42366.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	2.64304696999514	3.02349036687224	2.71821812569583	2.66119885052895	3.0287149706497	3.36802891751012	2.91057969167856	2.91977861421447	1.28565125470346	0.0440743380043097	0.214095566393629
Merged-chr9-69989908-4	chr9	69989800	69990000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008238, intron 1 of 9)	CpG	434.0	NM_001008238	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	7.09164728007761	7.19710411542391	7.05708437900708	7.04428811729875	6.90134828759611	7.07985955748999	7.21133600686097	6.95139400478471	-0.0834200464399325	0.661684877984142	0.85951937660314
Merged-chr2-69670737-3	chr2	69670630	69670830	+	872.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081087, exon 1 of 6)	exon (NM_001081087, exon 1 of 6)	610.0	NM_001081087	228003.0	Mm.178784	NM_001081087	ENSMUSG00000075307	Klhl41	Gm112|Kbtbd10|SARCOSIN	kelch-like 41	protein-coding	3.3130863381038	3.41387677930444	3.43386386563704	3.74406930920555	3.41629204637652	3.54794332945765	3.47669131967564	3.69104323821269	0.0996395005901962	0.848518061756377	0.942781137137219
Merged-chr6-134045172-4	chr6	134045095	134045295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	9495.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	4.89313913812896	4.99264375097072	5.4991171575915	5.32367355401253	5.11443147442674	4.99261733798091	4.94549879409869	5.13659048819783	-0.290060353375997	0.373171803801209	0.676790476285226
Merged-chr13-111687234-9	chr13	111687123	111687323	+	898.009277	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172593, intron 1 of 12)	CpG	1045.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	3.40759980968514	3.44600992626755	3.73201198927954	3.27054960663825	3.50729253851028	3.58463844605491	3.61751800514827	3.86506319604721	0.596794816663141	0.237195282310869	0.547347292424886
Merged-chr6-83636586-4	chr6	83636493	83636693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19523.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	6.62036821981023	5.88147155317532	7.06515138297617	7.49716302831	6.20968623241812	6.54095996180891	6.66307914867297	6.50226547642892	-0.580988027785838	0.228146770387966	0.537012532058367
Merged-chr3-65873287-4	chr3	65873165	65873365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	84984.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	7.04220361363385	7.28086643615715	7.03095590224449	7.32133493324116	7.00499570237283	7.14360090610049	7.20254930083426	7.15692774998608	-0.0858771555927121	0.654335518314236	0.855606647526205
Merged-chr16-24919900-4	chr16	24919801	24920001	+	963.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-139738.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	5.1855512406585	4.89093148347856	4.23071775215312	4.73692850096228	5.15413941086271	5.23983734479029	4.8089749775973	4.53912864295938	0.328286649458156	0.419619934691099	0.71270705668077
Merged-chr9-73113466-4	chr9	73113341	73113541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198609)	promoter-TSS (NM_198609)	-28.0	NM_198609	225215.0	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding	6.58057502872007	6.3858627782586	6.10186386471952	6.23078144882043	6.91774143117392	6.86493256294395	6.80588465935657	6.8867553115806	0.781513983858065	0.000244059818897226	0.00427880144071076
Merged-chr19-53038694-4	chr19	53038589	53038789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133216)	promoter-TSS (NM_133216)	-35.0	NM_133216	170750.0	Mm.99776	NM_133216	ENSMUSG00000025027	Xpnpep1	D230045I08Rik|sAMP	X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	protein-coding	9.03599446244847	9.23357261204992	9.09175235652321	8.97398267467168	9.02910339577049	9.05601280315921	9.33807076066157	9.00369021253137	0.0341564213932096	0.825713924772224	0.933159928336386
Merged-chr12-61994465-4	chr12	61994356	61994556	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	471289.0	NM_001310586	238205.0	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding	5.2844121160187	5.93326691755158	5.71761388616316	5.86571675869097	4.76267162626795	4.77101714873475	4.87638356568341	4.52513205076545	-1.86192335622427	2.4661291144126e-08	1.20976295130789e-06
Merged-chr8-34146740-4	chr8	34146658	34146858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026609)	promoter-TSS (NM_026609)	-19.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	7.1472250358199	7.05879143020342	6.99445942021715	6.94357744580694	7.11722638171649	6.95215522192779	7.22910558976135	6.72402196143218	-0.0121252770611888	0.952452027186592	0.983110341498473
Merged-chr11-109424601-4	chr11	109424484	109424684	+	658.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4a|LINE|L1	-1362.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	3.5771377024742	3.72109148098188	3.41356513869108	3.29062353290695	3.56865394841244	3.69513860360708	3.40077884090288	3.1560805928404	-0.111604672435458	0.836888181501736	0.938097898989847
Merged-chr1-191312796-4	chr1	191312716	191312916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025424, intron 1 of 3)	intron (NM_025424, intron 1 of 3)	5302.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	6.22931077241778	6.47552024142591	6.44264902020256	6.3118135212661	6.71970447568377	6.65457470236595	6.90065188064748	6.93091898021963	0.634879320533087	0.00252886924869629	0.0280049415822318
Merged-chr9-114401229-7	chr9	114401124	114401324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009752, exon 1 of 16)	exon (NM_009752, exon 1 of 16)	129.0	NM_001200002	100504715.0	Mm.290516	NM_001200002	ENSMUSG00000079260	Tmppe	-	transmembrane protein with metallophosphoesterase domain	protein-coding	6.0145680960693	6.34057636388458	6.3763909301674	5.96469343855318	5.8501010030105	6.10129764407816	6.00659327664988	6.11669159422408	-0.25071310362552	0.317131851433691	0.628970661015873
Merged-chr17-45642950-2	chr17	45642863	45643063	+	992.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013767, intron 4 of 21)	intron (NM_001013767, intron 4 of 21)	16346.0	NM_001013767	268958.0	Mm.426026	NM_001013767	ENSMUSG00000058626	Capn11	-	calpain 11	protein-coding	3.43831725223083	3.49614449820661	3.59444241357364	3.35372798179685	3.27367730587623	3.30798687569428	3.36975321193757	3.63971757138249	-0.223207513633581	0.667037801467242	0.86221345902729
Merged-chr9-36931835-3	chr9	36931623	36931823	+	959.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 6 of 12)	intron (NM_001029838, intron 6 of 12)	98149.0	NM_001357611	235180.0	Mm.5264	NM_183171	ENSMUSG00000032118	Fez1	UNC-76|UNC76	fasciculation and elongation protein zeta 1 (zygin I)	protein-coding	2.91548720421171	3.00292722121593	3.32012587591585	3.08749595587124	2.61351458669547	2.52135265956398	2.64570705033842	2.49918928486652	-2.80497311859969	0.000400147809756242	0.00644246119670653
Merged-chr6-124768690-4	chr6	124768573	124768773	+	757.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013509, intron 1 of 11)	intron (NM_013509, intron 1 of 11)	1000.0	NM_001302642	13807.0	Mm.3913	NM_013509	ENSMUSG00000004267	Eno2	AI837106|D6Ertd375e|Eno-2|NSE	enolase 2, gamma neuronal	protein-coding	3.69724389745826	4.20024686199631	3.80514485528167	3.68090213774002	3.56964493281937	4.16488048835282	3.8391094401585	3.45152636293126	-0.232107108162795	0.653342592739475	0.854997557892684
Merged-chr11-86356702-4	chr11	86356602	86356802	+	914.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080931, intron 1 of 29)	intron (NM_001080931, intron 1 of 29)	823.0	NM_001080931	327987.0	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	4.2730890336456	4.27062526125377	3.63385369814964	4.27532991096946	4.18821976367329	4.2176693216293	4.12267788346942	4.31242078542567	0.156511837122204	0.723406771850964	0.889592111771877
Merged-chr17-67474142-4	chr17	67474052	67474252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119661.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	6.92507161080468	7.10172426183542	7.05845703484774	7.30402922401307	7.25778567460284	7.42158094884613	7.46125348135067	7.44822454407393	0.373654603711608	0.0511388291873984	0.234687989860079
Merged-chr4-150474984-4	chr4	150474866	150475066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 6 of 22)	intron (NM_001085492, intron 6 of 22)	177208.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	4.9517331514404	4.69747615557473	5.14209107635222	5.5332884319478	5.00652819005913	4.3783881437461	4.4414954207625	4.84272931072241	-0.849312493432809	0.0363153387185754	0.189535818642725
Merged-chr14-77874870-4	chr14	77874725	77874925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025384)	promoter-TSS (NM_025384)	92.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	5.40494732430137	5.68693951953853	6.03021831991033	5.69314403464017	5.83446370236004	5.89393675627239	5.80938381655834	5.73978708722297	0.164519445877859	0.53735789603167	0.791028430120949
Merged-chr19-3325116-4	chr19	3325019	3325219	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 1 of 18)	intron (NM_013495, intron 1 of 18)	1818.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	4.45273546019505	4.29471637560663	4.15330024442575	4.39061361746322	4.19637574981466	4.22898872731912	3.92910203377407	4.41183142137256	-0.317723273710605	0.43260246637621	0.722596762180336
Merged-chr11-30649227-4	chr11	30649132	30649332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029344, intron 1 of 3)	CpG	164.0	NM_029344	75572.0	Mm.390319	NM_029344	ENSMUSG00000060923	Acyp2	2310004B09Rik	acylphosphatase 2, muscle type	protein-coding	6.37778003485663	6.43224195042303	6.44909865862552	6.37906713945213	6.300354458791	6.57287026829066	6.72986534008079	6.31905554962959	0.115273313228796	0.605674557044712	0.829013403791909
Merged-chr16-18811721-4	chr16	18811614	18811814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028403)	promoter-TSS (NR_028403)	258.0	NM_001161623	12544.0	Mm.1248	NM_009862	ENSMUSG00000000028	Cdc45	Cdc45l	cell division cycle 45	protein-coding	7.9470449128308	7.89365175810369	7.79280416719812	7.88423146322072	8.05523824250904	8.27037787838463	7.92397674927119	7.60077045537376	0.135181457257339	0.474687212623962	0.751855589262771
Merged-chr14-78790599-3	chr14	78790498	78790698	+	958.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57869.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	3.50425322518297	3.99309482514693	3.79588663148746	3.75944272379789	3.04530419954219	3.24403383868378	3.18959698835053	3.05496786499052	-2.47826101770956	3.78450843455988e-05	0.000886693633520533
Merged-chr1-63730618-4	chr1	63730528	63730728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172422)	promoter-TSS (NM_172422)	3.0	NM_172422	75619.0	Mm.30965	NM_172422	ENSMUSG00000025962	Fastkd2	2810421I24Rik	FAST kinase domains 2	protein-coding	6.18174579888275	6.40621335990583	5.74650571381271	5.78669035098826	6.69894243579086	6.5317195666241	6.55050076652754	6.69363268916755	0.854353950661396	0.000680354471085885	0.00989112559179376
Merged-chr1-180811827-4	chr1	180811723	180811923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008210, exon 2 of 4)	exon (NM_008210, exon 2 of 4)	1782.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	5.25098444813029	5.39388214609098	5.55697389698814	5.00013956427825	5.87326985389327	5.95364207938145	5.60720928446231	5.88501178022633	0.92357340146604	0.00122331546083634	0.0158087093658079
Merged-chr4-154928200-4	chr4	154928147	154928347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178931)	promoter-TSS (NM_178931)	-170.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	5.60320002481961	5.40641212973836	5.3385483956461	5.23247163816634	5.38151467073616	5.18099734539186	5.36940877229032	5.14389886062224	-0.197953065610267	0.500146890657705	0.768714895599853
Merged-chr7-3675102-4	chr7	3674973	3675173	+	965.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181820, exon 4 of 15)	exon (NM_181820, exon 4 of 15)	2480.0	NM_181820	353499.0	Mm.360398	NM_181820	ENSMUSG00000019734	Tmc4	-	transmembrane channel-like gene family 4	protein-coding	4.56353507489779	4.78360145380693	4.56424425700616	4.56926179893328	4.85806046179429	5.15105288952308	4.92356545907371	5.00888619582498	0.741889101529953	0.0246939656261757	0.147247363601035
Merged-chr14-103065787-4	chr14	103065679	103065879	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4437.0	NM_001033242	211286.0	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	4.53370252229279	4.59570927103295	4.1733663744792	4.36375141156177	4.55556668938863	4.70485090230665	4.3019363427907	4.40777457179353	0.175886024445988	0.644334484956157	0.850166542555413
Merged-chr3-153917372-4	chr3	153917272	153917472	+	915.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9A3|LTR|ERVK	-4406.0	NR_028094	19352.0	Mm.277831	NM_011231	ENSMUSG00000038975	Rabggtb	-	Rab geranylgeranyl transferase, b subunit	protein-coding	4.46760953921261	4.31082684685087	4.29901783619135	4.65394987285196	3.81397640739102	4.1765334089468	4.40755146391558	4.61450828770689	-0.400282217282294	0.360431924826315	0.665832290291253
Merged-chr6-67266875-4	chr6	67266735	67266935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025814)	promoter-TSS (NM_025814)	-144.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	8.08103346422148	8.13400522544831	8.18866282529415	8.38476151611406	8.1407782666476	8.15093705925399	8.34853895256516	8.02367153480867	-0.0494809535016074	0.768479570486358	0.909356419531329
Merged-chr7-38025555-3	chr7	38025421	38025621	+	828.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-5969.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	3.57398251490862	3.80712461296954	4.06278132107391	3.9262803745967	3.19297834098902	3.08381945039175	3.44830534201477	3.27028014407348	-2.12662207751368	0.00019957366455953	0.00363310840656849
Merged-chr15-24990251-4	chr15	24990163	24990363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	423501.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	5.92696328208731	5.88615953818302	6.32638013681032	6.85418489505977	6.13034884516581	5.16634782944047	6.11116979426843	5.96970088594424	-0.645455146305503	0.0665552329137351	0.274962848892376
Merged-chr6-42929207-4	chr6	42929118	42929318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3A1|LTR|ERVK	1985.0	NM_146295	258292.0	Mm.222992	NM_146295	ENSMUSG00000073111	Olfr446	MOR261-12	olfactory receptor 446	protein-coding	5.95816197726285	6.27844438523273	6.0892627567671	5.65661175235289	6.43059262442435	6.13558334074986	6.11804285338936	5.86029199796722	0.246657383065344	0.368328330687068	0.672790747218716
Merged-chr1-180736759-4	chr1	180736652	180736852	+	787.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133225, exon 4 of 8)	exon (NM_133225, exon 4 of 8)	10709.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	4.50005145224062	3.91873244773276	4.17262754361538	4.27941483495017	4.2394384306222	4.25043730540793	3.95479161257629	4.38466870042294	-0.0418715358528497	0.921123530200085	0.970769099300258
Merged-chr15-78305694-4	chr15	78305604	78305804	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007781)	promoter-TSS (NM_007781)	17.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	5.01875730541204	5.0268484828953	5.18180943693472	5.21287592134111	4.75492775338629	5.22711421682517	5.09430013585913	5.05031205438513	-0.172108289399712	0.588319814574964	0.819675135431917
Merged-chr3-35693215-4	chr3	35693109	35693309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-27046.0	NR_040748	625963.0	Mm.251506	NR_040748	ENSMUSG00000105662	Gm6639	-	predicted gene 6639	ncRNA	6.26874130985297	6.20465178289721	6.3443183978676	6.50475320154929	6.14112224526498	6.36733344401525	6.44804105312293	6.47655611577519	0.0140000593621943	0.951423480685486	0.982751007570922
Merged-chr10-61143505-4	chr10	61143430	61143630	+	978.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 2 of 14)	intron (NM_009163, intron 2 of 14)	4154.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	5.21244383466525	4.88814119719271	4.7514669752164	5.61454340738246	4.982627828783	5.19492878503318	4.88866157623846	5.0513382854929	-0.28935339697786	0.426782290420956	0.718178378645673
Merged-chr15-78876363-4	chr15	78876255	78876455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145929)	promoter-TSS (NM_145929)	-835.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	5.58502286875881	6.13349849654997	5.69276827109786	5.44680066655313	5.77955114284992	5.8929677860333	5.80861875633339	5.73908705755062	0.117267294349824	0.679794228036894	0.86857902618052
Merged-chr10-96690505-4	chr10	96690397	96690597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73496.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	6.10825731611642	6.78725793308152	5.87284529860888	5.85205166966719	6.73115530046426	6.50318819217203	6.27636009419793	6.22826614820881	0.360480519962547	0.229538092133688	0.538611736247523
Merged-chr9-95507589-4	chr9	95507504	95507704	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357977, intron 1 of 25)	intron (NM_001357977, intron 1 of 25)	4392.0	NM_001357975	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	4.52243030635598	5.13652572742386	4.90598758766348	5.10919292098411	5.25908272445213	4.55482248662818	4.91852456706553	5.50594452557605	0.314202524099288	0.418209287640316	0.711720714523612
Merged-chr2-128687375-4	chr2	128687268	128687468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008569)	promoter-TSS (NM_008569)	27.0	NM_008569	17222.0	Mm.277408	NM_008569	ENSMUSG00000014355	Anapc1	2610021O03Rik|AI047775|AI853536|AW547281|Apc1|Mcpr|tsg24	anaphase promoting complex subunit 1	protein-coding	5.37009403030066	5.66121393927257	5.02636283586643	5.48064050172799	5.66806255362417	5.76530601673642	5.37401683161393	5.39715675885857	0.259436246205828	0.389395961889445	0.689708844201125
Merged-chr13-23543491-4	chr13	23543333	23543533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013548)	promoter-TSS (NM_013548)	11.0	NM_178197	319182.0	Mm.352273	NM_178197	ENSMUSG00000114456	Hist1h2bh	H2b-221	histone cluster 1, H2bh	protein-coding	6.99126318150289	6.83484967862968	6.84553453487389	6.98812120505311	7.12551870554015	7.02270353664711	7.26697228177892	7.03696103603887	0.271671666593878	0.15253481243722	0.436763594091937
Merged-chr12-111810010-4	chr12	111809910	111810110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028875, intron 3 of 7)	intron (NM_028875, intron 3 of 7)	3869.0	NM_028875	74335.0	Mm.19082	NM_028875	ENSMUSG00000021287	Xrcc3	-	X-ray repair complementing defective repair in Chinese hamster cells 3	protein-coding	6.78201486575168	6.8177910715378	6.36062675192048	6.77804886684754	6.55902226534505	6.68325084898628	6.81561174456916	6.56861698108111	-0.0683103132021769	0.753864576983015	0.902899658843581
Merged-chr14-52279490-4	chr14	52279373	52279573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172601)	promoter-TSS (NM_172601)	-78.0	NM_172601	76338.0	Mm.32870	NM_172601	ENSMUSG00000022159	Rab2b	1500012D09Rik|4930528G15Rik|A230002G14|D530043M21Rik	RAB2B, member RAS oncogene family	protein-coding	8.61038693049767	8.88057956957933	8.78588249731328	8.83596750243819	8.74866293839116	8.77540064393902	8.85112215056649	8.71786748874868	-0.0144709606168886	0.921415186172314	0.970886721487516
Merged-chr10-130322802-3	chr10	130322695	130322895	+	838.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183264)	promoter-TSS (NM_183264)	-57.0	NM_183264	67596.0	Mm.131264	NM_183264	ENSMUSG00000034833	Tespa1	5830405N20Rik|A430001F24Rik|AI450549	thymocyte expressed, positive selection associated 1	protein-coding	4.01234904970146	3.76579293354907	3.82453891675906	4.3008626373887	3.55887733298564	3.59423950190955	3.75758161825864	3.82232755198699	-0.949545596104494	0.0501915346098015	0.232343553337584
Merged-chr4-132008385-4	chr4	132008277	132008477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	40701.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	6.9495992322913	6.38793496612926	6.8062045571038	6.75303381249591	6.93285699085694	6.61465497400382	6.99930199900114	6.86914136737504	0.182621700427238	0.408393675054782	0.704329923147872
Merged-chr16-22511451-4	chr16	22511348	22511548	+	933.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_130988)	promoter-TSS (NR_130988)	-32.0	NR_130988	78082.0	Mm.243927	NR_130988	ENSMUSG00000089874	9230117E06Rik	-	RIKEN cDNA 9230117E06 gene	ncRNA	4.83329422223323	4.52194729832011	4.57815193383179	4.66139030196064	4.59217847805221	4.58136721119284	4.18836819134353	4.83080817149124	-0.183069268634587	0.625723872633435	0.840077702061137
Merged-chr3-94483517-3	chr3	94483406	94483606	+	874.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357787)	promoter-TSS (NM_001357787)	784.0	NR_110353	78784.0	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	2.96104382625343	3.13028087636384	3.17750897482512	3.07023602296513	2.61779469099276	2.7335463648151	2.54533600609848	2.83659635686492	-2.01044393973842	0.00382193057524344	0.0386586892731637
Merged-chr11-79528849-5	chr11	79528740	79528940	+	886.4400019999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033711, intron 1 of 1)	intron (NM_001033711, intron 1 of 1)	1769.0	NM_146023	101488212.0	Mm.439665	NM_146023	ENSMUSG00000070354	Evi2	Evi2a-evi2b|Gm21975	ecotropic viral integration site 2	protein-coding	4.06736350494386	3.71856326041793	3.54978122379092	3.78683347813139	4.47278669659974	4.33167144964493	4.09638397922207	4.36190976800468	1.39116506683675	0.00143906352681113	0.0180336448547341
Merged-chr2-158155790-4	chr2	158155692	158155892	+	974.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9400.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	5.01251716753022	5.10589017241496	5.18032220270522	4.89032366787397	5.0410227237812	5.52630837006855	4.95332627982217	5.32407894965242	0.341853035729503	0.286813206721197	0.598454467247327
Merged-chr15-101105584-4	chr15	101105488	101105688	+	889.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10167.0	NM_144790	208258.0	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	3.75354792309338	3.86756964301665	3.75403495792334	3.83395048845635	4.15492609092276	4.61522523002354	4.15055317020689	4.37175679014	1.35336230481386	0.00155733466354507	0.0192580826991791
Merged-chr6-83165806-4	chr6	83165708	83165908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198866)	promoter-TSS (NM_001198866)	-116.0	NM_001198866	13191.0	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	5.87180201668227	5.79447042726536	5.96133055520762	5.60336346938986	5.85362704975037	6.04745619894453	5.56370485032992	6.05947234763528	0.150678211368639	0.571696209056311	0.810781529929199
Merged-chr19-11659328-3	chr19	11659223	11659423	+	844.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037634, intron 1 of 3)	intron (NM_001037634, intron 1 of 3)	1236.0	NM_001037634	225922.0	Mm.26881	NM_001037634	ENSMUSG00000055895	Oosp2	Gm99|Plac1l|Tmem122	oocyte secreted protein 2	protein-coding	3.97821450703759	3.65456545108987	3.93843644515167	3.60397077363234	3.48845920893085	3.33908111499906	3.58912434516488	3.70670383662186	-0.828107846936168	0.102717082319804	0.352030987581283
Merged-chr1-131188730-4	chr1	131188640	131188840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018750, intron 2 of 5)	MIR3|SINE|MIR	11445.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	6.64582506004728	6.54127304088962	6.61708129307478	6.80366828914131	6.3643832675325	6.30102645298965	6.52147695033662	6.32447242976421	-0.417378686862235	0.0510845908199818	0.23461473162491
Merged-chr11-120581131-4	chr11	120581026	120581226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133796, intron 1 of 5)	CpG	494.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	5.37347411421473	5.62657713931546	5.34508712226655	5.28984768264839	5.02655891890263	5.63116884393415	5.19495220033578	5.28069148449829	-0.216977768280413	0.480759349962	0.756125456193411
Merged-chr1-127202449-4	chr1	127202362	127202562	+	965.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2524.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	5.14092250123195	5.17291195427493	5.20415491117165	5.56327844912384	4.93081125560827	4.82263732209421	5.05155097289221	5.03868493137925	-0.642660684064986	0.0442343200797486	0.21450206415276
Merged-chr2-58850696-3	chr2	58850588	58850788	+	926.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 11 of 13)	MTEa|LTR|ERVL-MaLR	95504.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	4.01568672993684	4.03140030177442	4.22068210541557	4.11976110060533	3.37164632374199	3.72053748289278	3.39416750437827	3.77038797171097	-1.62855046076834	0.000974299232769515	0.0131568288919183
Merged-chr10-120202363-5	chr10	120202317	120202517	+	903.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028679)	promoter-TSS (NM_028679)	-287.0	NM_001359184	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	4.10593326470814	4.58945082689621	4.54561889611462	4.11951476636182	4.35642940722857	4.3341130413591	4.36756540119109	4.34202628177473	0.000574327758226029	0.998858187531005	0.999476023480276
Merged-chr19-5806946-4	chr19	5806854	5807054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4282.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	6.74867027174274	6.51792639674689	6.11766973577859	6.44656927796622	6.70884334921776	6.22846980453098	6.17169069731302	6.58807700923349	-0.031232924746993	0.902219376041477	0.963727511420608
Merged-chr6-53708082-4	chr6	53707963	53708163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112762.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	5.48399365922739	6.0009016546287	5.65068841232659	5.25982671413861	5.43954864351525	5.90044947452579	5.89801842058387	5.64668275342849	0.182577968089228	0.552875484235201	0.799909020720316
Merged-chr10-122597592-3	chr10	122597403	122597603	+	945.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27612.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	2.9862635838721	2.8412713513406	3.53186953391084	3.30239922343827	3.0471419669352	3.22716974312892	3.10453161698349	3.23141065301305	-0.159624307948005	0.794828912418572	0.920615503025147
Merged-chr14-73041777-3	chr14	73041694	73041894	+	818.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162412, intron 2 of 4)	intron (NM_001162412, intron 2 of 4)	7320.0	NM_133720	70086.0	Mm.158324	NM_133720	ENSMUSG00000033470	Cysltr2	2300001H05Rik|CYSLT2R|Cltr2|Cyslt2	cysteinyl leukotriene receptor 2	protein-coding	3.25077654312728	3.1391200250609	3.3631641661862	3.33676092802428	3.04527287353933	3.17348473610445	3.63199627562623	3.12723104151913	-0.048034468658896	0.933091485626594	0.975903066165441
Merged-chr6-97819162-4	chr6	97819056	97819256	+	888.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	12098.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	4.98051847103989	5.11656912049415	5.01188695599367	4.98431190250651	4.50952464277393	4.14534510159363	4.38578036321682	4.35320551674071	-1.43042541553908	9.33420557232481e-05	0.00191597214797695
Merged-chr7-31002844-4	chr7	31002743	31002943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20922.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	6.86937629983952	6.53455720463048	6.97197821228391	6.83262782796262	6.55869393461809	6.99276605897184	6.78198815069378	6.68124433012107	-0.0776287985534963	0.721698839241883	0.888884104579521
Merged-chr17-10359604-4	chr17	10359502	10359702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35000.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	7.36360498622035	7.57282745008519	7.31224304411095	7.54912779730933	7.64421578358351	7.37760049537954	7.70653767963973	7.47766856594741	0.133468339750928	0.466052205026255	0.746285345696695
Merged-chr16-25053084-4	chr16	25052995	25053195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6544.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	7.50742012023573	7.16371916726494	7.32344354041455	7.72618506418291	6.88576362110847	6.93013872032099	6.87855468107948	6.822843176732	-0.790960435569065	0.000132624384826749	0.00257222645438234
Merged-chr7-127470973-4	chr7	127470884	127471084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145589)	promoter-TSS (NM_145589)	-630.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	7.14925224539886	7.33677077761096	6.82893392244325	6.55967246847869	7.2507660769033	7.31589451368174	7.20186374399443	7.21173023546194	0.346571976615755	0.13110398972972	0.403070580167935
Merged-chr11-21425925-4	chr11	21425843	21426043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54676.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	6.538597755136	6.11282423987404	6.19243660837511	6.56864366387658	5.87717324146104	5.86289447562789	5.83810785631408	5.620749501367	-0.890381735972759	0.000479509422400729	0.00747176032772799
Merged-chr9-64179320-4	chr9	64179213	64179413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183316)	promoter-TSS (NM_183316)	16.0	NM_183316	330959.0	Mm.24082	NM_183316	ENSMUSG00000032398	Snapc5	2010103A03Rik	small nuclear RNA activating complex, polypeptide 5	protein-coding	6.53848849371194	6.78643695260636	6.2250672181755	6.29699555637072	6.87547685629277	6.81008853942843	6.38655773847263	6.61426432346607	0.309097817731955	0.202154531364792	0.50461441050349
Merged-chr14-56375944-4	chr14	56375843	56376043	+	771.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138652, intron 10 of 22)	intron (NM_138652, intron 10 of 22)	10875.0	NM_138652	192113.0	Mm.273271	NM_138652	ENSMUSG00000022229	Atp12a	Atp1al1|HKalpha2|cHKA	ATPase, H+/K+ transporting, nongastric, alpha polypeptide	protein-coding	3.67842575756381	4.03779927614595	3.67889201459912	3.95794228167064	3.93184350963308	3.90587972119043	3.8227799307813	3.78520277669529	0.0162243194957905	0.97151969326958	0.989698355367312
Merged-chr2-75788620-6	chr2	75788475	75788675	+	854.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43602.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	3.78566631687021	4.33612531005282	3.78615548811142	3.73221661290975	4.63245871971506	4.23358219931428	4.26432887960634	4.10464303782326	1.01420542611805	0.0260574880551103	0.15270426002591
Merged-chr2-142611342-4	chr2	142611241	142611441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	290123.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	7.63297833065243	7.36808501633275	7.91203246101708	8.17395229657914	7.59819100209119	7.61612382745113	7.97961083222122	7.39204801294164	-0.197786523868181	0.39320468168161	0.692367387227111
Merged-chr10-95670051-3	chr10	95669949	95670149	+	941.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-105903.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	4.09795725645485	3.84899041457499	3.77551673906652	4.03716947083425	3.82372736795185	3.66268997867404	3.59460484896875	3.82483203110199	-0.62864376190773	0.172512802247867	0.465990544422004
Merged-chr2-180051205-4	chr2	180051108	180051308	+	849.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178750, intron 1 of 10)	intron (NM_178750, intron 1 of 10)	8725.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	4.42838843057394	4.45989701942306	4.38500492572489	4.41461337738625	4.49412932131732	4.79853064629905	4.56999474519806	4.33673511269423	0.302925070652042	0.407387910736183	0.703636793592033
Merged-chr16-81202178-4	chr16	81202077	81202277	+	798.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113208, intron 1 of 17)	intron (NM_001113208, intron 1 of 17)	1480.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	3.65830406547125	4.16846610602242	3.8867212002515	4.15881738289565	4.19744787197537	3.77694577704795	4.06283422631627	4.07825008710564	0.124319462250692	0.786962904077689	0.917257197669312
Merged-chr10-98966827-4	chr10	98966784	98966984	+	969.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	51732.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	4.57733557111944	4.66465992850215	4.62033802148778	5.01605771391808	5.08661029043401	4.75362162482652	4.85906579390089	4.39116959354209	0.119574613574519	0.753578907886773	0.902798885097597
Merged-chr10-43701115-3	chr10	43701000	43701200	+	934.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2F|LTR|ERVL	-45058.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	3.49569868657032	3.01240703028091	3.09769260869845	3.40049152135779	3.07870638066063	3.39587061167067	3.21259203935018	3.71089733719824	0.366729807517014	0.541569230636638	0.793322966546999
Merged-chr9-22225732-4	chr9	22225649	22225849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172763)	promoter-TSS (NM_172763)	37.0	NM_001164624	235047.0	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	7.74661813268525	7.68218604907738	7.77816836420168	7.62284056230423	7.39353005067284	7.44658494865082	7.30856549735354	7.38148059097707	-0.424860908327203	0.0118127837798447	0.0888630455152787
Merged-chr2-78988408-3	chr2	78988315	78988515	+	666.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	118737.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	3.28933849783134	3.12049812423223	3.1203325902483	3.04434228684856	3.29493943083641	3.10148783323747	3.22331360119691	3.11880449727365	0.205395772723607	0.709067277029445	0.88326595109779
Merged-chr2-71020011-4	chr2	71019910	71020110	+	943.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	intron (NM_145524, intron 1 of 9)	-1636.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	5.07444250450467	5.26566426308732	5.25464764128564	5.3351832470059	4.77651160386439	4.65613387496957	4.80506953282784	4.70218136425885	-1.00005721843629	0.00173774094333206	0.0209680729963439
Merged-chr15-38388465-4	chr15	38388360	38388560	+	816.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A1|LTR|ERVK	-87749.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	3.63547056732086	3.99923540814673	3.57805631769089	3.73001270637183	3.65956439804228	3.80961906717377	3.87740866315862	4.02374708037128	0.281378086397343	0.548598754315427	0.797514668901371
Merged-chr7-48973071-2	chr7	48972971	48973171	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	13998.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	3.30183289783499	3.32148239264889	3.24564786925698	3.63976756918884	2.9668991859018	3.23451502280593	3.17522042896976	3.1229409985979	-1.06531275945501	0.0639367027297667	0.268619440656479
Merged-chr19-45651687-3	chr19	45651583	45651783	+	839.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 1 of 8)	intron (NM_013907, intron 1 of 8)	8510.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	4.15113691950716	4.38885151193705	4.37224783720443	4.28883877649214	4.19479763381045	4.12198197369621	4.56904735867396	3.94421489966683	-0.182459593639039	0.660410182621945	0.858863852752456
Merged-chr12-55474034-4	chr12	55473941	55474141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18606.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	7.25848396675662	7.25148789733817	7.75309185753657	7.29990949470218	7.21325843559212	7.38172463739866	7.12259177504039	7.1417263094594	-0.250164633608223	0.218988744891326	0.526372845621011
Merged-chr10-59265817-4	chr10	59265718	59265918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43896.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	7.26371051576542	7.42846378196952	6.92508868983814	7.47382883584135	7.31668898733979	7.37646816927298	7.23921422929037	6.92019630965691	-0.100094800904019	0.639043025104786	0.847417964618581
Merged-chr13-37880278-3	chr13	37880180	37880380	+	898.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	-8154.0	NR_033218	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.70914967270181	3.60186216352112	3.26346394583476	3.62705300739991	3.39890790407179	3.62127539351269	3.37811071521527	3.60969952031033	-0.203815409755281	0.690477189966292	0.873950421520214
Merged-chr1-149831287-4	chr1	149831191	149831391	+	992.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 17 of 17)	intron (NM_008869, intron 17 of 17)	91148.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	4.80793983915611	5.21858030167954	4.71412621989572	5.05876074772607	6.08877260377566	5.94419381714756	5.71957040868393	5.52785715081396	1.50446070026982	1.78449695263364e-06	5.90510035292933e-05
Merged-chr17-40934621-4	chr17	40934520	40934720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008650)	promoter-TSS (NM_008650)	-65.0	NM_008650	17850.0	Mm.259884	NM_008650	ENSMUSG00000023921	Mut	D230010K02Rik|Mcm	methylmalonyl-Coenzyme A mutase	protein-coding	8.84816103310251	8.99834004280626	8.77127968439291	9.09426649275511	9.19298729706714	9.1564307135609	9.11878469159146	8.91005484828591	0.199250872613693	0.201492426025502	0.50391050273113
Merged-chr13-56613711-4	chr13	56613625	56613825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 1 of 16)	intron (NR_155548, intron 1 of 16)	4139.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	6.07423239180601	6.00141053054404	6.03346228352838	6.15004094658449	5.91733243488655	5.78769030108663	6.39801658962314	5.87083969703394	-0.0850147186212106	0.740920575536515	0.89809586945461
Merged-chr4-138024851-3	chr4	138024758	138024958	+	970.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	27033.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	4.20821837197349	3.72154779958431	4.13666079263545	4.20238802383767	3.11089150748919	3.14165532625494	3.17615558148949	3.39603921037794	-3.29491767641282	2.57190448270142e-07	1.01085361222642e-05
Merged-chr13-92986085-3	chr13	92985974	92986174	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87230.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	3.49710805273402	3.7070595388705	3.57597953527078	3.50754722026596	4.97605351127887	4.76243455902084	5.02454930892144	4.99513431323124	3.40872889247576	1.14840299456541e-13	1.48352407895048e-11
Merged-chr4-115057083-4	chr4	115056973	115057173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287388)	promoter-TSS (NM_001287388)	647.0	NM_011527	21349.0	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	5.04993479124024	4.69247950251938	5.20944788539181	5.3357934190912	4.90806094564327	4.88432117508694	4.99223280115103	5.44857054568852	-0.0521183910315241	0.882519059673897	0.95575354370667
Merged-chr1-35839628-3	chr1	35839509	35839709	+	880.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-228791.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	3.27332168467507	3.32805098817858	3.50486111244594	3.36950217947402	3.40984417512158	3.67226892369699	3.49076464123512	3.5547381734245	0.543179425786676	0.27714411886955	0.589300206200641
Merged-chr16-37109415-2	chr16	37109315	37109515	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001114611, exon 26 of 26)	3' UTR (NM_001114611, exon 26 of 26)	97629.0	NM_001159369	77782.0	Mm.259114	NM_029977	ENSMUSG00000034206	Polq	A430110D14Rik	polymerase (DNA directed), theta	protein-coding	2.15339006622994	2.11744874263924	2.30738241678901	2.34785796261062	2.5760026375287	2.55051970103727	2.61744100650005	2.56909489511054	1.91852686915057	0.0156495376257618	0.108060954017122
Merged-chr14-57407902-1	chr14	57407802	57408002	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-9419.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	4.57125616075186	4.61875420664107	4.39405327422802	4.86930036347892	4.80288331787318	4.66112589339322	4.6309143725392	4.72512287312118	0.138110891239258	0.701373730955992	0.87967443506783
Merged-chr19-55253777-5	chr19	55253623	55253823	+	973.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027976, exon 1 of 22)	5' UTR (NM_027976, exon 1 of 22)	354.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	5.24493991411627	5.92082441434074	5.62999341359397	5.05825927246735	5.10825100054984	5.14130241666794	5.18767902601447	5.36423651926727	-0.534100165366269	0.116232950914219	0.377192724223727
Merged-chr6-129211559-3	chr6	129211475	129211675	+	926.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26470.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	3.77592231641351	3.69328613549102	3.59167204854619	4.19662138821189	4.37128097444504	4.11265844658446	4.38173622793783	3.88473657558234	0.912691710366149	0.0657304721665799	0.272933687921187
Merged-chr15-78862515-4	chr15	78862399	78862599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-6970.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	6.03945300856866	6.61374342369178	6.20742640125544	6.35963207318136	6.19654458617147	6.30291496482119	6.05328780748164	6.01373348040823	-0.277410780579329	0.258804119638049	0.570569857886287
Merged-chr2-165317085-4	chr2	165316982	165317182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302754)	promoter-TSS (NM_001302754)	-731.0	NM_001302754	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	7.06130378283658	7.19783674156216	6.77567394682185	7.08771758782092	7.13990986253515	7.09790778108345	7.21836634357154	7.45206406557224	0.256054648023909	0.200938950098149	0.503065263001114
Merged-chr5-124476002-4	chr5	124475907	124476107	+	974.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	2228.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	4.48679550337538	4.48935041338971	4.69545637026725	4.63091189865825	4.85842972135331	5.22786595158473	4.81684173939772	4.12570278721129	0.490010163385756	0.229596596133774	0.538668581005189
Merged-chr4-63494942-4	chr4	63494828	63495028	+	950.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028640, exon 1 of 12)	exon (NM_028640, exon 1 of 12)	1063.0	NM_001008793	73750.0	Mm.300397	NM_028640	ENSMUSG00000039137	Whrn	1110035G07Rik|AW122018|AW742671|C430046P22Rik|Dfnb31|Ush2d|wi	whirlin	protein-coding	4.52119622012596	4.75736743486085	4.72107197660871	4.60105412105861	4.67357133611139	4.73792847694382	4.36687371484751	4.78951382213684	0.00196513279003385	0.995567084017693	0.998377456742254
Merged-chr11-58211125-4	chr11	58211020	58211220	+	972.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3857.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	5.51585152041433	5.76836208515475	5.62078450585591	5.20860054908614	5.75638011991533	5.20986671827215	5.68756206333934	5.0247660284009	-0.116236119132737	0.725796420035412	0.890921883682774
Merged-chr6-22409077-4	chr6	22409003	22409203	+	911.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53022.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	3.92429586308975	4.03201317802242	4.54572369026316	4.41442841996459	3.65546360634018	4.24858725173714	3.9087650910506	3.75276700759421	-0.940109616811788	0.0493065574870088	0.229734419370164
Merged-chr5-139409602-4	chr5	139409472	139409672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	3185.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	5.92530671934946	5.83470897825042	6.60493120289594	7.04236525684266	5.79857632493224	5.95309664242703	5.74256292189159	6.46577030017963	-0.664014123041946	0.057137974005855	0.250494201266491
Merged-chr13-54218469-4	chr13	54218356	54218556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153432, intron 2 of 3)	intron (NR_153432, intron 2 of 3)	26323.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	7.1300326210521	7.21864736770874	7.27866535010087	7.46926773286155	7.35214452711146	7.45565493333239	7.36414561636788	7.39573723596865	0.131189066428028	0.474743619653578	0.751855589262771
Merged-chr2-32428693-4	chr2	32428590	32428790	+	848.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146118, intron 1 of 10)	intron (NM_146118, intron 1 of 10)	2461.0	NM_001164358	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	4.19630169157128	4.3741588851861	4.1037333086601	4.11283934857887	4.15190847948536	4.07258546298174	4.13325942187908	4.28108513873058	-0.0896008899559457	0.823092097451209	0.932185203682946
Merged-chr4-88763585-4	chr4	88763496	88763696	+	922.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	2822.0	NM_001085531	545645.0	Mm.489553	NM_001085531	ENSMUSG00000100505	Gm13283	EG545645	predicted gene 13283	protein-coding	4.73924058584788	4.40554229031372	4.44774922003258	4.57934705898285	5.61575702366246	5.53291604139844	5.57660406901989	5.64589768901693	1.96103406954456	2.74638565640996e-10	1.97061476449198e-08
Merged-chr9-90431147-4	chr9	90431060	90431260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160391.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	6.96113656919315	7.24279021517032	7.34424182932576	7.14148858882156	7.47464213212174	7.19108777182762	7.18174399875815	7.61471897262503	0.277392353100567	0.168453740232778	0.460548798201267
Merged-chr8-79373988-2	chr8	79373888	79374088	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	25480.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	2.93345751478681	2.83046420989887	2.67352379860716	2.55770158319174	3.14550407796329	2.91802591622022	2.86304781724664	2.87197894671852	0.962066369425254	0.128720947450138	0.399190846921982
Merged-chr7-125553350-8	chr7	125553251	125553451	+	905.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	1069.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	4.0871712362167	4.2098444154645	3.81690635395377	4.10301799670459	4.35496976145416	4.637215930216	4.65077387689647	3.98252701080912	0.906750051163165	0.0366930684076088	0.19071018007924
Merged-chr4-88436803-4	chr4	88436655	88436855	+	908.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025760, intron 2 of 6)	intron (NM_025760, intron 2 of 6)	2171.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	3.43713877640882	3.6784832091213	4.27718840407799	4.21224387533016	4.10275157624155	3.82215378219179	4.17804735074014	4.10998040283397	0.27857302285664	0.591837831095837	0.821848634889742
Merged-chr5-34236248-3	chr5	34236152	34236352	+	858.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 2 of 12)	intron (NM_001015039, intron 2 of 12)	-48542.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	3.7206847632119	3.33553857299826	3.76939183339754	3.71125192502923	3.45210631379828	3.68167267132529	3.75291001019562	3.44718846187102	-0.188501559361321	0.708001766756458	0.882703520735834
Merged-chr1-152608987-4	chr1	152608889	152609089	+	944.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	16228.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.3311706992835	4.44172433196848	4.50008537622742	4.29467761154485	4.38442909446601	4.54835573557554	4.59092769994111	4.08294549083649	0.0623740984411924	0.871808294299522	0.95183223179801
Merged-chr9-44239647-2	chr9	44239547	44239747	+	984.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1030.0	NM_001360344	270150.0	Mm.347681	NM_001081369	ENSMUSG00000070306	Ccdc153	-	coiled-coil domain containing 153	protein-coding	3.47046507501111	3.49542737086629	3.63593016664225	3.16457137810726	3.86095799012018	3.75496310849694	3.39867164895466	3.68434401149682	0.80526673338488	0.118494849773188	0.380852938376694
Merged-chr2-117231444-4	chr2	117231355	117231555	+	963.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18284.0	NM_026620	68215.0	Mm.219389	NM_026620	ENSMUSG00000027349	Fam98b	2610510H03Rik	family with sequence similarity 98, member B	protein-coding	5.25130769591373	4.84365442569751	4.82633633646156	5.10984541340607	4.9748655850509	4.83975227689127	5.25311609753631	4.74303819252534	-0.106879876806154	0.751686556621525	0.902264711867851
Merged-chr6-24984802-3	chr6	24984700	24984900	+	911.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28675.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	4.25431187250084	4.26059567103222	4.45684800873451	4.7621119861328	3.92791466368937	4.02881915353984	3.94566337289684	3.95920156597644	-1.29415396790538	0.00257489334659793	0.0283515809044298
Merged-chr11-70499843-5	chr11	70499771	70499971	+	908.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5403.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	4.34013877978162	4.52664522894643	4.83929258541143	4.15254622496814	4.47604764462451	4.8401802659717	4.32166855580547	4.42850337120101	0.115548193021861	0.777119334279281	0.913034573074491
Merged-chr3-27283547-4	chr3	27283462	27283662	+	952.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33515.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	4.55878932472677	4.92968652362985	4.80861429877801	5.0214829997892	5.14886564786096	4.64564927739747	4.96041576676233	4.91385155787438	0.168742263704112	0.627873957055102	0.841351605797479
Merged-chr16-32419659-4	chr16	32419567	32419767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025329)	promoter-TSS (NM_025329)	-35.0	NR_154990	66061.0	Mm.302693	NM_025329	ENSMUSG00000014075	Tctex1d2	0610012D17Rik|2410011K15Rik	Tctex1 domain containing 2	protein-coding	8.11809246893362	8.26695068809405	8.04182896954357	7.98716143128629	8.11677015866825	8.12226188887679	8.1478588184581	8.1510961288317	0.038284961060088	0.808700153357316	0.926138274128125
Merged-chr9-50775405-4	chr9	50775393	50775593	+	972.0595089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133981, exon 1 of 15)	exon (NM_133981, exon 1 of 15)	268.0	NR_045601	102580.0	Mm.160035	NM_133981	ENSMUSG00000032059	Alg9	8230402H15Rik|AI747665|B430313H07Rik|Dibd1	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)	protein-coding	4.33570605863321	4.25186146677597	4.3756166078702	3.78888138823818	4.02480516124566	3.86114733468035	4.10174141052936	4.29314666006269	-0.298481898434735	0.50852719889941	0.773535236506654
Merged-chr9-95557531-4	chr9	95557418	95557618	+	924.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2299.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	5.17525490614364	5.40243050944786	5.29285217183947	4.95782479057714	5.34141912013034	4.92323284741485	4.67879499332196	4.69714072645017	-0.484114155011631	0.177485508874935	0.472907128704387
Merged-chr5-21363481-4	chr5	21363395	21363595	+	821.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	L1MA5|LINE|L1	-9178.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	3.92329581563145	3.77044650711336	3.87404152478546	3.79801429529714	4.12044332670459	3.50540055508947	4.12807905870353	4.10309514906893	0.431314797205015	0.353179194201425	0.660101709258846
Merged-chr10-61147672-4	chr10	61147577	61147777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316674)	promoter-TSS (NM_001316674)	7.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	7.88162511272302	8.1329893298337	8.03795677876759	7.95242314358936	8.26091042602668	8.06755100183795	8.27197731255842	7.97834936546962	0.19378973549843	0.245202265134813	0.556278949164329
Merged-chr12-33128395-4	chr12	33128302	33128502	+	844.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015602, intron 4 of 5)	L1MC1|LINE|L1	19184.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	4.04209488055588	4.04670855003556	3.99350075588632	4.28172333330922	4.26758241719311	3.83440181996707	3.97707708008253	4.21970840656625	-0.0340101791141156	0.937389024981879	0.977334367260951
Merged-chr9-111562794-4	chr9	111562705	111562905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016853, intron 10 of 10)	intron (NM_016853, intron 10 of 10)	123724.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	5.24599272841226	5.39715852693991	5.52920150723872	5.48706008079869	5.95237626909238	5.83708456822619	5.82084709452055	5.75620443239735	0.706208261940956	0.00681073868527641	0.0597006807462465
Merged-chr13-101685104-1	chr13	101685004	101685204	+	618.0	f0_balb.idr	intron (NM_001024955, intron 9 of 9)	intron (NM_001024955, intron 9 of 9)	7526.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	2.940992223986	3.03822115823661	3.20580925053153	3.15908492398949	2.8748806095259	3.43741988074653	3.19345829347377	3.73605555748139	0.929016179009301	0.134117428145453	0.407789280437658
Merged-chr19-5038857-4	chr19	5038762	5038962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175383)	promoter-TSS (NM_175383)	36.0	NM_175383	108902.0	Mm.29628	NM_175383	ENSMUSG00000047379	B4gat1	1500032M01Rik|B3gnt1|B3gnt6|BETA3GNT1|iGAT|iGNT	beta-1,4-glucuronyltransferase 1	protein-coding	5.74478489747328	6.13649358594757	5.74579140710303	5.48115840474587	5.93039296786605	5.64426216515488	5.98624000625407	5.95029552297928	0.162003032429689	0.561808371449213	0.805159621706194
Merged-chr7-102441722-4	chr7	102441622	102441822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009103)	promoter-TSS (NM_009103)	27.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	7.53011205349779	7.52553860219736	7.07310169242399	7.42707502482906	7.34634385747051	7.44114771867849	7.64492057819758	7.53509504569801	0.117685905424531	0.541380650333439	0.793237936001129
Merged-chr8-79640142-4	chr8	79640044	79640244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081164, intron 1 of 20)	CpG	468.0	NM_001081164	73945.0	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	5.91051306288091	5.97905797725355	6.41801403308698	6.28427984538037	6.28550771803837	6.4523400073504	6.29926562548595	6.4299746724047	0.291299951118082	0.22402629861846	0.532128184797041
Merged-chr10-81526943-4	chr10	81526854	81527054	+	824.325012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2729.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	3.89214390794886	4.02369793607039	3.94226809366495	3.87878054379515	3.88332759906404	4.11250764690784	3.92560082841553	3.78543404592101	-0.0105935971032959	0.980389019243623	0.99281244474172
Merged-chr9-120936519-4	chr9	120936420	120936620	+	929.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007614, intron 1 of 14)	intron (NM_007614, intron 1 of 14)	2942.0	NM_001165902	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	4.09361920077821	3.88480568414718	3.72771418210772	3.72103971661896	4.34649612613274	4.26503405658385	4.20459653112204	3.89517956012747	0.89932635499029	0.0382442739452609	0.196010165261357
Merged-chr3-60531460-4	chr3	60531374	60531574	+	961.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	30295.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	5.34406647432882	5.07118306415006	4.90358785268209	5.23574037288932	4.84828147515335	4.87991586630391	5.26413929675328	4.90034255691777	-0.33309917113765	0.307103777469159	0.619340215249893
Merged-chr11-119053426-4	chr11	119053319	119053519	+	868.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12506.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	4.9682273744159	4.65327150517161	4.44324909407522	4.32960585623831	4.79126862399171	4.5749490102191	4.88193180388114	4.69242836156357	0.292309877810592	0.43349147058143	0.723017372399372
Merged-chr11-30786728-4	chr11	30786631	30786831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134013, intron 1 of 46)	intron (NM_134013, intron 1 of 46)	14956.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	5.38589658433354	5.11115888220278	5.38682064101029	5.57781740679766	5.72524640172968	5.62071357899096	5.74456652478116	5.4705392981118	0.441189875572334	0.121682742343741	0.386356101585507
Merged-chr15-62056606-4	chr15	62056502	62056702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	17345.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	8.14336036556672	8.1673289560835	8.42067818941517	8.37230223321139	8.12564400184648	7.8563471976144	8.15442876892905	7.94599950047617	-0.324512954279673	0.0552759451741836	0.245843945360736
Merged-chr2-62638828-4	chr2	62638716	62638916	+	726.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027835, intron 2 of 15)	Lx9|LINE|L1	7439.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	3.5694103326378	3.6007532305467	3.6287575735467	3.70915527521361	4.06398163282186	4.01040060856176	3.82471053590651	3.83874779447833	0.890293317336251	0.0485875604970599	0.227557176511398
Merged-chr15-94566065-4	chr15	94565960	94566160	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029926, intron 10 of 11)	ORR1D2|LTR|ERVL-MaLR	22400.0	NM_029926	266632.0	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	4.97064058170278	5.04036454510686	4.9354698802261	5.13378509610071	5.0529202947861	4.95780425588541	5.23008977358417	5.03713001341667	0.0773898058605123	0.801627776862769	0.923495023618862
Merged-chr8-107293962-2	chr8	107293853	107294053	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001286260, intron 1 of 12)	CpG	483.0	NM_133957	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	4.94123677474097	5.09804389330351	5.37443092372157	4.70956930529469	4.84879884505594	5.1535921623477	5.08874990750675	5.26159826346629	0.100783967244501	0.768419046232725	0.909356419531329
Merged-chr2-14192236-4	chr2	14192143	14192343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081310, intron 1 of 3)	intron (NM_001081310, intron 1 of 3)	17719.0	NM_001081310	625286.0	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	7.24510419270537	7.56325589088572	7.11043497353264	7.3777323116638	7.08236285008857	7.3112647200757	7.27268396215568	6.74840402481252	-0.297956529625342	0.162777233814959	0.452255606647826
Merged-chr10-19526523-4	chr10	19526424	19526624	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31881.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	5.57004506519194	5.83726678942779	6.19852829425568	6.0469539582111	5.30962008665296	5.22664945449764	5.40040129263894	5.19206188921526	-1.11256882565016	0.000116002204279362	0.00229550205682533
Merged-chr15-27863166-3	chr15	27863059	27863259	+	834.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 11 of 56)	intron (NM_001081302, intron 11 of 56)	162689.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	3.8362858851603	4.3844368663711	3.78295823980884	4.09144078164026	3.85317613266182	3.95765299147191	3.65489424153608	3.83465988729371	-0.620888430472052	0.185312679210943	0.48321688073985
Merged-chr14-73123957-4	chr14	73123865	73124065	+	948.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18545.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	4.16605774874761	3.62978657554275	3.81609265545915	4.06846699575838	4.38887410264572	4.24742758949037	3.96143253780231	4.20713046372176	0.701934970079407	0.116990746396509	0.378478517305568
Merged-chr18-34857828-3	chr18	34857739	34857939	+	850.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3368.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	3.36302362584238	3.55748474447554	3.42707693293268	3.04188488565353	4.08094760669191	3.48099190744345	3.78619793560133	3.93373287291605	1.58034931757988	0.00274098513773625	0.0297500123694615
Merged-chr3-142474624-4	chr3	142474521	142474721	+	840.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22313.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	3.99594667348939	3.83426070395854	3.69140013012884	3.81656089493753	3.87286063464032	4.07251685076866	3.83704539161807	3.8507289600695	0.20403620777414	0.642169543805228	0.849025502136307
Merged-chr15-78572795-4	chr15	78572690	78572890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009008)	promoter-TSS (NM_009008)	-7.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	5.7032683490905	5.76703274233377	5.35815570739686	5.70615556992576	5.92303854133541	5.8018460539309	6.04241787242179	5.50999233920359	0.30929411509831	0.25974988572106	0.571563806638815
Merged-chr2-51972287-4	chr2	51972181	51972381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019401, intron 1 of 7)	intron (NM_019401, intron 1 of 7)	927.0	NM_001141949	64685.0	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	5.9536350123585	5.82692405791437	5.95468597625045	6.18633470258061	5.69382058037268	5.57155677002899	6.1046842238112	5.76381594173714	-0.323062799157076	0.225134235727976	0.533502988868384
Merged-chr2-46371208-4	chr2	46371111	46371311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	674606.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	7.1904563191438	7.59418178217415	7.74474915901521	7.20202082379325	7.38188770930141	7.65729532073767	7.30772782965926	6.98616392949645	-0.128459312063873	0.57317583481597	0.811692154196247
Merged-chr6-85433676-2	chr6	85433544	85433744	+	629.0	f0_balb.idr|f0_c57.idr	intron (NM_144918, intron 1 of 12)	intron (NM_144918, intron 1 of 12)	1668.0	NM_144918	232187.0	Mm.219946	NM_144918	ENSMUSG00000033706	Smyd5	AW536703|NN8-4AG|Rai15|Rrg1	SET and MYND domain containing 5	protein-coding	3.12416685856747	3.24865180600577	3.12450446725738	3.17336861745683	3.50188640063995	3.42703071197645	3.46303515820653	3.66611697456959	1.22454909248045	0.0178595061676407	0.118565589292359
Merged-chr11-69991560-4	chr11	69991473	69991673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026017)	TTS (NM_026017)	203.0	NM_019749	56486.0	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	6.53345893343752	6.75186130540712	5.91177086776673	6.26126084705108	6.59700763190701	6.94849064854341	6.62544909093921	6.78174846669396	0.49322747590847	0.0526567195154127	0.239155987645965
Merged-chr3-139012590-4	chr3	139012496	139012696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286759, intron 4 of 14)	intron (NM_001286759, intron 4 of 14)	62605.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	5.1264498995202	5.27072737713144	5.29665812815381	5.4774260562343	5.72100132940274	5.53363323531201	5.4467092454511	5.64989468014831	0.489422443312525	0.0844291214829046	0.316133508898561
Merged-chr5-115532135-4	chr5	115532044	115532244	+	973.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	25468.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	5.23399134766117	5.67518731710396	5.38862400560303	5.4763569942717	5.22567424458357	5.04206943784069	5.77403566643397	5.19823072640332	-0.205062405798051	0.520571668005612	0.780819107722505
Merged-chr9-35118839-4	chr9	35118734	35118934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029475, intron 2 of 5)	intron (NR_029475, intron 2 of 5)	-1970.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	5.37456076933768	5.33966941544985	5.94009901717224	5.95645650604234	5.61907950891064	5.31908597286319	5.54743032553155	5.27551758026623	-0.413128810902021	0.186915487396	0.485120635668048
Merged-chr6-129153956-3	chr6	129153846	129154046	+	725.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-26669.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	2.48141563547017	2.42439379706062	2.48162548954407	2.11244014085746	3.17648754574204	3.29741685396082	3.53203048293454	3.22636448114143	7.236067035254	9.4173305837118e-13	1.0064807411682e-10
Merged-chr7-113612801-4	chr7	113612715	113612915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-47828.0	NR_126544	69295.0	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	6.80723351840426	7.06852209270893	7.34262754457342	7.45400450310587	7.27610912771087	7.18156895666169	7.27615187526461	7.11065021089534	0.0137647004225817	0.948571966792451	0.981488065587328
Merged-chr19-21737732-4	chr19	21737640	21737840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40600.0	NM_001033759	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	6.43911823305867	6.28577101467241	6.06991028542814	5.97261007268111	6.64929909151432	6.52885623051446	6.62281459938395	6.38395637269704	0.54227744124823	0.0194836406721508	0.125743590479918
Merged-chr9-57762718-4	chr9	57762639	57762839	+	784.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007713, intron 1 of 12)	intron (NM_007713, intron 1 of 12)	3121.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	3.29726632287229	3.55819238210931	3.41610841058606	3.09651694020889	3.21235378470098	3.64289875838834	3.28574556802244	3.71518838078562	0.448290857640574	0.418562847352859	0.711957531262122
Merged-chr4-129033731-3	chr4	129033620	129033820	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24551.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	5.14328915851254	6.17656238069206	5.28356510304435	4.64755538328092	5.92231413858997	5.87762267231167	5.52300137191226	5.34431021909816	0.41400161958793	0.311192834852713	0.623234990348648
Merged-chr2-4555427-4	chr2	4555317	4555517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 11 of 23)	intron (NM_001177843, intron 11 of 23)	-4337.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	7.37328702262083	7.23903240641511	7.25385665288912	7.3516813958229	6.77607228628287	6.8690890471506	7.30886375225777	7.13850748324318	-0.371944690227415	0.0678038700444251	0.277838185299054
Merged-chr6-6578578-4	chr6	6578435	6578635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009169, exon 1 of 3)	exon (NM_009169, exon 1 of 3)	123.0	NM_009169	20422.0	Mm.2469	NM_009169	ENSMUSG00000042541	Sem1	DSS1|Shfdg1|Shfg|Shfm1	SEM1, 26S proteasome complex subunit	protein-coding	6.49080747175307	6.61333846504999	7.316110721268	6.65915786219655	6.60006506699361	6.95587916554359	6.800301815696	6.90950418316202	0.0164973153353129	0.947692015646976	0.981348536548879
Merged-chr5-77015999-4	chr5	77015882	77016082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027970)	promoter-TSS (NM_027970)	-41.0	NM_027970	71868.0	Mm.151092	NM_027970	ENSMUSG00000029248	Thegl	1700023E05Rik	theg spermatid protein like	protein-coding	6.35719013829854	6.47565217947474	5.8542625655739	6.41531450877031	6.3165391206624	6.65427457066448	6.59947793907425	6.40686495726575	0.277252910131351	0.258592000883332	0.570489393947544
Merged-chr6-38533678-4	chr6	38533582	38533782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1179.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	8.49668754058542	8.74818651963233	8.61355314838966	8.61511585509886	8.56399509483215	9.02202010545404	8.73728791630453	8.58485248849973	0.143443823148991	0.39514081447986	0.694085386552044
Merged-chr2-153241458-4	chr2	153241357	153241557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018807)	promoter-TSS (NM_018807)	-75.0	NM_080463	140484.0	Mm.293761	NM_080463	ENSMUSG00000046020	Pofut1	O-FucT-1|mKIAA0180	protein O-fucosyltransferase 1	protein-coding	7.17752076630288	7.55328527649991	7.1549683760229	7.44748868071725	7.48387666195503	7.45792694185713	7.68647461937755	7.4093109670716	0.213097217256005	0.266241672880341	0.578020222870011
Merged-chr10-77903092-4	chr10	77903076	77903276	+	744.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145152)	promoter-TSS (NM_145152)	-640.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	3.33000422799724	3.22393732752065	3.6936920835923	3.4332936325285	3.49084781453007	3.55990475062223	3.31876170077616	3.49768743460239	0.134983441500752	0.795092175207546	0.920762027490351
Merged-chr8-117482478-4	chr8	117482374	117482574	+	963.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-15801.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	4.95115292033342	4.84866196536506	4.51271585796849	4.8066402494189	5.16333111398049	4.94507756389232	4.96104805539395	4.80579100349368	0.384744838682395	0.248799550196996	0.560031091754854
Merged-chr19-5572934-4	chr19	5572855	5573055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4931.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	5.21065128387209	5.54383060142605	5.5773533681917	5.42383466498843	5.17383603240763	5.32086187062326	5.21799353571108	5.14106996644244	-0.424206805614992	0.14216282715064	0.419579876176779
Merged-chr5-142400368-3	chr5	142400298	142400498	+	758.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1099.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	3.04881387516109	3.26657158896493	3.26166180822511	2.98107344260045	3.87555365805227	3.7283924498521	3.73372585332864	3.65507850766533	2.15741442576671	2.7226316663578e-05	0.000668135718128054
Merged-chr2-33426143-4	chr2	33426041	33426241	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276332, intron 1 of 1)	intron (NM_001276332, intron 1 of 1)	5183.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	4.13480754820988	4.39055486427976	4.55974468981379	4.45920543469445	4.33631869033335	3.98000390219347	4.01482963012835	4.59215015782957	-0.329980875371913	0.436348474948173	0.725104204892846
Merged-chr3-148933315-4	chr3	148933224	148933424	+	975.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081298, intron 1 of 23)	intron (NM_001081298, intron 1 of 23)	21311.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	5.86851074115263	6.01401258751981	5.78040078638334	6.09170490568892	5.38017283100038	5.276662243147	5.37995932651928	5.16620641476311	-1.09939187304974	5.3687221101713e-05	0.00120383519029362
Merged-chr18-9503206-4	chr18	9503142	9503342	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53088.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	5.18975453474898	5.15490360568807	4.85176970323901	5.24991551459319	5.26246412211274	4.63163326778862	4.82902753819805	5.06228723985536	-0.278570083475193	0.416915251907318	0.710744672757979
Merged-chr17-42912358-4	chr17	42912260	42912460	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35936.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	5.38269947226062	5.10565342996948	5.87448216614899	6.32264650443863	6.06833292787963	5.93185520748584	5.7750241949584	5.87027343316665	0.224659144295093	0.520423399853293	0.780787600139836
Merged-chr10-44658437-4	chr10	44658347	44658547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-199699.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	7.35485288409205	7.06958992267818	7.45614428681994	7.2401217351918	6.96812106678149	6.84477404897524	6.54784823918504	6.74088817053156	-0.67966989064773	0.00107288936474845	0.0142241725197235
Merged-chr18-9486566-4	chr18	9486485	9486685	+	954.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36431.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	5.156706804953	5.15074788894099	5.63116248094653	5.99042353042369	5.32082811348558	4.99510727552298	4.87381902688989	5.15404585347702	-0.800802699911621	0.0250535730127847	0.148656908425892
Merged-chr12-73438839-2	chr12	73438739	73438939	+	768.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29276.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	2.7739029072785	2.673684349683	2.7742819062774	2.33949300183213	2.59868838013943	2.7562558293536	2.70299367656776	2.58017404438232	0.0764753925237222	0.912091184761203	0.967119105604399
Merged-chr3-89436931-4	chr3	89436785	89436985	+	974.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146131, intron 1 of 10)	intron (NM_146131, intron 1 of 10)	181.0	NM_146131	229534.0	Mm.65906	NM_146131	ENSMUSG00000042613	Pbxip1	4732463H20Rik	pre B cell leukemia transcription factor interacting protein 1	protein-coding	4.4153081963605	4.67183091167186	4.95610226829997	4.38605053963278	4.58124021434936	4.45241562786369	4.35116584806463	4.49990728034698	-0.308741250548581	0.422942898902333	0.714938134013999
Merged-chr9-44233406-4	chr9	44233306	44233506	+	945.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 1 of 15)	intron (NM_007619, intron 1 of 15)	640.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	4.28361230911181	4.2314829612895	4.02773199709648	4.32239735349193	4.64765984601463	4.58873135032592	4.51600524639024	4.53440475082777	0.793713862488154	0.0339519333643414	0.181813471632595
Merged-chr12-98212593-4	chr12	98212466	98212666	+	729.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008079, intron 14 of 16)	L1_Mus3|LINE|L1	46893.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	2.94373059589656	3.22020806815789	3.34536893644115	2.97003705186281	3.17842222265161	3.86517475342771	3.27332524854561	3.65118136929885	1.3788522329803	0.0187994658058774	0.12275820153453
Merged-chr10-77664291-3	chr10	77664175	77664375	+	955.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-22294.0	NM_001287074	252974.0	Mm.221237	NM_145855	ENSMUSG00000069581	Tspear	C330046G03Rik|ORF65|TSP-EAR|Tnep1	thrombospondin type laminin G domain and EAR repeats	protein-coding	4.09842442762445	3.8065090944993	4.01644339681196	4.03345230351838	3.29632913599	3.6143275838037	3.66097366738375	3.61655853708077	-1.39718604009631	0.00455808902838433	0.0443515395689385
Merged-chr19-45782776-4	chr19	45782616	45782816	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023799, intron 1 of 15)	intron (NM_023799, intron 1 of 15)	837.0	NR_151594	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	4.0790840061323	4.57971879259254	4.62448299478626	4.39107608927169	4.56797807239808	4.5097750183144	4.52704579535215	4.545259938536	0.237354241152663	0.528374612446662	0.785012764602495
Merged-chr12-95745255-4	chr12	95745165	95745365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	53039.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	6.59216262595668	6.53697152463034	6.8053408765257	6.75014077742104	6.95973083202297	6.75411083782433	7.11947698297646	6.77233965779397	0.330910468869878	0.111943941313614	0.369743500552577
Merged-chr17-12991305-4	chr17	12991203	12991403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175394, intron 1 of 5)	intron (NM_175394, intron 1 of 5)	956.0	NM_001113533	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	5.37875409041578	5.81794771808974	5.70675270925362	5.88809362660256	5.83690257422003	5.85726299899662	6.15076323779709	6.23089301717815	0.478870764073468	0.0787622608293434	0.3036790511658
Merged-chr17-85458226-3	chr17	85458117	85458317	+	791.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028576, exon 11 of 11)	3' UTR (NM_028576, exon 11 of 11)	160179.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	4.12349707082437	3.4919143053578	4.00762194831394	4.03486579362619	3.15358367583018	3.69524214556705	3.31394649839471	3.17976351878192	-1.96944940364054	0.000706582985481089	0.0101974595141035
Merged-chr4-88034554-1	chr4	88034454	88034654	+	728.0	f0_balb.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-1147.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	4.09155993262574	3.3729445229029	3.55203909591169	3.49345624538112	3.50166278640021	3.4215935341969	3.69422208019602	3.60488599791322	-0.289200135483796	0.58533267615969	0.818084247493924
Merged-chr2-122149574-3	chr2	122149473	122149673	+	890.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009735, intron 1 of 3)	RSINE1|SINE|B4	1886.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	3.65405536000408	3.73441564178732	3.21222109468326	3.3639464266062	3.790500011507	4.02204287717932	3.69175432442394	3.80445676622475	1.00216671604874	0.0453907860075702	0.218198876020317
Merged-chr18-42275282-4	chr18	42275190	42275390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033452)	promoter-TSS (NR_033452)	-63.0	NM_172626	225432.0	Mm.329400	NM_172626	ENSMUSG00000024491	Rbm27	A730010I06|AI043120|Psc1|mKIAA1311	RNA binding motif protein 27	protein-coding	8.62748454139095	8.48875768080126	8.13451502022849	8.55858637561545	8.43723437112737	8.40636249351665	8.64077931533242	8.26488489257599	-0.0305404667129853	0.86320201913829	0.948557392167294
Merged-chr1-155218267-3	chr1	155218163	155218363	+	786.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59560.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	3.21142857059309	3.0489064699422	3.26906372042859	3.08907496792964	3.18025558622277	3.1334427430493	3.19979452906061	3.51956728976769	0.431565064509013	0.433311825174308	0.722830392839943
Merged-chr2-94438231-4	chr2	94438137	94438337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001349003)	promoter-TSS (NM_001349003)	-51.0	NM_001349003	11800.0	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	7.89158108475326	7.89853588755252	7.94339811169437	8.18228305963046	7.91912720845579	8.00236325979324	7.96042383600338	8.12176554408616	0.00883338428688953	0.958192609849136	0.985110633982061
Merged-chr15-95790113-2	chr15	95790013	95790213	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253813)	promoter-TSS (NM_001253813)	-730.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	3.5101622612932	3.53377180307897	3.67867775424162	2.91516492089228	3.76604790504227	3.85265436035913	3.76288787256982	3.91545671482105	1.23141708788607	0.0255936180538349	0.150917748277186
Merged-chr3-98051919-3	chr3	98051795	98051995	+	951.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	38357.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	4.0680945703529	4.22181966615998	3.97434889240074	4.45561866524621	3.5772824417943	3.82340109719893	3.68979604430169	4.01995469059346	-1.18872011988662	0.0110483853887713	0.0847153962713944
Merged-chr5-72812480-4	chr5	72812378	72812578	+	955.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	55970.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	5.02382392707846	5.02532199833501	4.63258725808995	5.25800752828351	5.43832083686464	5.19788201403527	4.85857766489724	4.67455449866232	0.134678790998724	0.716688411949656	0.886676884514573
Merged-chr4-116631124-4	chr4	116631022	116631222	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3171.0	NM_016777	50927.0	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	5.33421242913012	6.13607809831025	5.76519197449036	5.48557699688401	5.67257568366295	5.64327105830469	6.07303916878349	5.92080313525989	0.201972025652815	0.505820746853329	0.771670166111689
Merged-chr12-98269845-4	chr12	98269742	98269942	+	952.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008152, intron 1 of 1)	intron (NM_008152, intron 1 of 1)	1207.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	4.74080507723201	4.5287277561729	4.59714205238747	4.63838401947352	4.17051565385097	4.15658619876049	4.78428334175856	4.34134962667017	-0.550410214221427	0.163313090026403	0.452930544905097
Merged-chr15-73687705-3	chr15	73687602	73687802	+	747.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19803.0	NM_173365	239530.0	Mm.122997	NM_173365	ENSMUSG00000045281	Gpr20	A430106B11Rik	G protein-coupled receptor 20	protein-coding	2.88045253618405	2.88763133700098	3.10250661257489	3.00044661276365	2.92617915448606	2.71583404664803	2.60669602686433	2.75241079208827	-0.962596744623567	0.14138372308021	0.41833891155872
Merged-chr9-103234229-4	chr9	103234128	103234328	+	758.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3942.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	3.80004435196819	3.82344915303371	3.84992021274221	3.89208703840291	3.74717877590027	3.63657721104392	3.96889468060169	3.6385246352731	-0.262657838221497	0.56388225315801	0.806505945776915
Merged-chr11-54619102-4	chr11	54618990	54619190	+	958.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 7 of 28)	intron (NM_001252494, intron 7 of 28)	22944.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	5.36705633230706	4.99086384867782	5.26131333683603	4.76924818661401	4.91340507851723	4.80395233925609	4.92246393789662	4.9429362227419	-0.394856537317541	0.247332848728678	0.558407233154394
Merged-chr5-140596694-2	chr5	140596594	140596794	+	764.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-10647.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	3.41670943852321	3.23873515286459	3.51601980661525	3.21322389587074	3.0469338850564	3.10533591465017	3.29701832096168	3.25112677275189	-0.639834911285184	0.250121444001945	0.561217956991978
Merged-chr1-181170447-4	chr1	181170334	181170534	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19503.0	NM_030131	98417.0	Mm.38229	NM_030131	ENSMUSG00000062169	Cnih4	AI647760|AW050376|CNIH-4|D530030D03Rik|E430023H19Rik|HSPC163	cornichon family AMPA receptor auxiliary protein 4	protein-coding	4.82426182892566	5.02492193504831	5.70196621168311	4.92083878025138	4.51791561538215	4.92424943210778	4.64010133646334	4.70137914216771	-0.923100296082648	0.0159933687398495	0.109650548404329
Merged-chr17-86232417-3	chr17	86232319	86232519	+	908.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	MIR|SINE|MIR	54759.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	3.80543452607426	3.46327334385864	4.23586994780181	4.24949512870881	3.92782932715061	3.3565152607364	3.62881620843556	3.75162531724889	-0.843659900311506	0.12941589211736	0.400360889731452
Merged-chr7-45053379-4	chr7	45053230	45053430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175022)	promoter-TSS (NM_175022)	-449.0	NM_175022	233210.0	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	6.62864002251951	6.63118962304922	6.04779451359466	6.10318943123149	6.69097386363121	6.83501382164971	6.40194761966451	6.7121574443656	0.430591887352078	0.0867380646205689	0.321209032577518
Merged-chr6-83436736-4	chr6	83436639	83436839	+	896.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 3 of 11)	intron (NM_001347313, intron 3 of 11)	4939.0	NM_183138	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	4.43327167756534	3.83245100719193	4.13246218061716	4.29717883937287	4.42898324584268	4.15601613627955	4.48666129948539	4.02924119212266	0.241435951956464	0.576430007910436	0.813520896079505
Merged-chr17-17583509-4	chr17	17583409	17583609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	ORR1E|LTR|ERVL-MaLR	40980.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	5.34554235821579	4.83579504246703	5.02534838284949	5.2750944549643	5.45189751542285	5.16593874279254	5.55026720449463	5.16010518973981	0.375675122920714	0.235949086927692	0.545918160675954
Merged-chr10-127123622-4	chr10	127123511	127123711	+	760.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2451.0	NM_001171026	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	3.49278933422258	3.74002118670604	3.43174814639859	3.79241725155095	3.61233720851894	3.83213396091301	3.64746261470144	3.80908340395249	0.266615862281271	0.584398585652373	0.817596016641525
Merged-chr3-108018011-4	chr3	108017915	108018115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010358)	promoter-TSS (NM_010358)	-42.0	NM_010358	14862.0	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	8.10435899134904	8.06779652478844	8.11791741871162	8.1384592412563	7.80615992037689	7.56501180511244	7.99129601993332	7.59196673716695	-0.458259592290726	0.00814986394505293	0.0680308626415999
Merged-chr7-36730843-3	chr7	36730812	36731012	+	705.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172298, intron 1 of 1)	(TCC)n|Simple_repeat|Simple_repeat	32794.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	3.85673637403392	3.29393593795595	3.32888606617647	3.36030476765966	2.96718224046864	2.90889751584394	3.01243977686264	2.95016459635505	-2.12042291535298	0.000922188493907799	0.0126158859903639
Merged-chr6-73239047-1	chr6	73238947	73239147	+	562.0	f0_c57.idr	Intergenic	Intergenic	-9458.0	NM_019879	56451.0	Mm.29845	NM_019879	ENSMUSG00000052738	Suclg1	1500000I01Rik|Sucla1	succinate-CoA ligase, GDP-forming, alpha subunit	protein-coding	2.25091963345901	2.05103562919065	2.17263035724176	1.92936813329003	2.50391181865034	2.50521955910586	2.63384359003756	2.70011277164593	3.56907628455754	3.32843928852542e-05	0.000793951005757208
Merged-chr7-112217370-3	chr7	112217247	112217447	+	970.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-8489.0	NM_177282	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	4.47528200327037	4.6130479169476	4.47601476690218	4.55231262817603	3.85421596753501	4.08770666759383	4.20302151992732	4.07018937975328	-1.21197663885286	0.00257718053958258	0.0283701103660607
Merged-chr1-188980273-2	chr1	188980192	188980392	+	647.75	f0_balb.idr|f0_c57.idr	intron (NR_153196, intron 13 of 17)	intron (NR_153196, intron 13 of 17)	27548.0	NM_001359577	226823.0	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	3.56060037022536	3.72551066955928	3.62008751638786	3.67546623950118	3.83410409218082	4.09472819263665	3.90984829745746	3.72870960835374	0.715574403915641	0.115262790860877	0.375551139370427
Merged-chr15-97782901-4	chr15	97782793	97782993	+	776.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1472.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	3.99816250607681	3.97992707974534	3.95418668815157	3.83850002398471	3.78203378513919	3.51082509781433	3.45181898838118	3.95173470934916	-0.71980807487161	0.135943861997788	0.410349387415563
Merged-chr5-21043086-4	chr5	21043007	21043207	+	911.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	ORR1F|LTR|ERVL-MaLR	-7860.0	NM_001356590	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	4.83966761815632	4.39146635570302	4.59011837291819	4.15255220965262	4.50638880524898	4.72320648674493	4.64457651133936	4.54698255820514	0.234628649046877	0.546926890071084	0.796638012378211
Merged-chr18-62047184-4	chr18	62047081	62047281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94106.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	8.00238989007357	7.83724591361512	8.06149018614814	8.00002542509319	7.59984638245403	7.54432725420043	7.94552914061769	7.72804743309707	-0.344900314894809	0.0494331841572103	0.230075166822881
Merged-chr7-143073239-4	chr7	143073121	143073321	+	727.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020277, exon 23 of 25)	exon (NM_020277, exon 23 of 25)	3853.0	NM_001115085	56844.0	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	4.12040453663166	4.20814306833626	4.0748283258282	3.75656635759794	4.03512833544689	4.24625673896833	4.05711029042921	3.97480492729434	0.112711244654142	0.79451511519283	0.920564651199299
Merged-chr4-46558882-4	chr4	46558768	46558968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	7572.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	7.82297653227512	7.71125647237416	7.74876356167378	8.03602975874026	7.41117984633977	7.27904727752561	7.57150759998656	7.55028011584558	-0.50846237738709	0.0050997840988004	0.0482004424868561
Merged-chr11-104382095-4	chr11	104381994	104382194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 3 of 14)	B1_Mur2|SINE|Alu	60197.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	5.92037866023105	6.0341287648406	5.2982792636404	5.74444056559021	5.88069645259248	5.91220985436745	5.49425816604032	5.68277087085139	-0.0385454423377138	0.894523096901612	0.960597129193908
Merged-chr3-94621906-1	chr3	94621806	94622006	+	554.5	f0_balb.idr	intron (NM_001293728, intron 8 of 11)	intron (NM_001293728, intron 8 of 11)	36966.0	NM_001293728	22156.0	Mm.10214	NM_011656	ENSMUSG00000005968	Tuft1	-	tuftelin 1	protein-coding	2.6684845277514	2.7158439033938	2.78179450221869	2.63024017101261	2.300936977886	2.43604981836852	2.25130192950988	2.40694843896059	-2.18743622266709	0.00590265466214016	0.0536241296996139
Merged-chr9-109914436-4	chr9	109914292	109914492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-17382.0	NM_001205331	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	7.84568426274483	7.80388629485001	7.66964818137307	7.6072790907065	8.01173861503341	8.22536077837326	8.11343286564933	7.84169231056681	0.420013526607915	0.0152081550138405	0.105899165107626
Merged-chr10-83819833-3	chr10	83819739	83819939	+	687.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96974.0	NM_001145198	69784.0	Mm.271188	NM_001145198	ENSMUSG00000087651	1500009L16Rik	2700050C19Rik|OCC-1	RIKEN cDNA 1500009L16 gene	protein-coding	3.67611684810982	3.39454630213627	3.13764887599198	3.60612661796123	3.58723494808932	3.63636498646243	3.61156331508188	3.72250371746451	0.515220708561172	0.321135476308088	0.632872863063664
Merged-chr14-76402417-3	chr14	76402320	76402520	+	881.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12541.0	NM_001310646	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	3.95506122917612	3.93822695764992	3.60634171877635	3.95521396740476	3.71705374977964	3.3973374698394	3.59293101877395	3.81525931256837	-0.698538250781251	0.152761753887124	0.437172362943173
Merged-chr17-26691474-4	chr17	26691368	26691568	+	956.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025272, intron 2 of 3)	intron (NM_025272, intron 2 of 3)	15072.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	4.90754018833968	5.21540105514394	4.97815387711386	4.52415371146424	5.27892157064404	4.97188629024508	4.88473119443674	4.62625193089441	0.104662186960986	0.7788278978368	0.913802853320572
Merged-chr3-116583288-4	chr3	116583178	116583378	+	910.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175413)	TTS (NM_175413)	11609.0	NR_152258	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	3.69543037430089	3.73088179007323	3.97929465362132	4.02953787780107	4.58790785470933	3.93889448433003	4.42316221816355	4.12154857492335	1.08485321013759	0.0177619135682409	0.118114204775309
Merged-chr13-64181123-3	chr13	64181052	64181252	+	939.2000119999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019986, intron 5 of 7)	intron (NM_019986, intron 5 of 7)	19286.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	3.75552884257188	3.93931384251556	3.63388460066137	3.60349257919971	3.98528869780902	4.19339753117103	4.29677301367674	4.38827194788301	1.31673340203761	0.00262975383753479	0.0288462395441345
Merged-chr14-50931050-4	chr14	50930939	50931139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310505)	promoter-TSS (NM_001310505)	-190.0	NM_001310507	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	9.15892925917034	9.12508487606522	8.99841789461511	9.0449531912373	9.32019901656978	9.32258888381509	9.15131944003815	8.92628196014428	0.134744332097265	0.384914486830904	0.686335535913647
Merged-chr2-71843499-4	chr2	71843410	71843610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008397, intron 20 of 25)	intron (NM_008397, intron 20 of 25)	-29714.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	5.96680563144635	5.63563927138692	6.0406987076236	6.36341066086718	6.62926995137881	6.68665175544958	7.04205537728513	7.04148648234556	1.18902819253579	7.93853045107142e-06	0.000224139888527097
Merged-chr5-9103742-4	chr5	9103667	9103867	+	924.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	3030.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	3.50752463133213	4.05408428997272	3.74750865405981	3.90165738757251	3.9691327554911	3.86657975315853	4.02231143509433	3.90005760249116	0.322360487206609	0.483850448432956	0.758089863981149
Merged-chr17-56274711-4	chr17	56274644	56274844	+	810.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174989, intron 1 of 1)	ID_B1|SINE|B4	2023.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	3.77379487650398	3.9010031995132	3.88091594595568	3.53022782648795	4.24688187485632	4.15035268126605	4.05248459185674	3.77222826696678	0.851808424326472	0.060089985449912	0.258734805779401
Merged-chr9-59659545-4	chr9	59659464	59659664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253883, intron 1 of 10)	intron (NM_001253883, intron 1 of 10)	3196.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	5.97274280489963	5.61145378969705	5.71002142817864	5.3105145511646	5.67165159323297	6.10591034848509	5.31756756381318	5.27359794634691	-0.0431699406569489	0.895641382551081	0.960926545377703
Merged-chr2-4446786-4	chr2	4446672	4446872	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	45796.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	4.97818040704685	5.11622328215431	5.2483669697684	5.39231757552519	5.30091514819932	5.19214984509145	5.44262393701696	4.97569683965749	0.0630674976175715	0.840243780194458	0.939246943014465
Merged-chr14-55014601-2	chr14	55014481	55014681	+	858.833374	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_026890)	promoter-TSS (NM_026890)	-873.0	NM_026890	68966.0	Mm.21214	NM_026890	ENSMUSG00000022204	Ngdn	1500001L15Rik|Ngd|neuroguidin	neuroguidin, EIF4E binding protein	protein-coding	3.97740377753593	3.85095488099629	3.88684666794855	3.54643204571654	3.95685977488948	3.6841590797584	3.42886008490173	3.88447618836889	-0.159128154141945	0.748735924411281	0.901063036615673
Merged-chr6-72098145-3	chr6	72098040	72098240	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	532.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	4.39128007719873	4.24445861595319	4.69116320385035	4.54211902588998	4.01100971309666	4.06766496308492	4.28551433873086	4.5840979616102	-0.540403566647179	0.193318028230192	0.493529716199714
Merged-chr12-80436746-4	chr12	80436677	80436877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177267)	promoter-TSS (NM_177267)	-176.0	NM_177267	320808.0	Mm.220310	NM_177267	ENSMUSG00000049106	Dcaf5	9430020B07Rik|AI325023|AI430035|AI848110|AW124614|BCRG2|BCRP2|Wdr22	DDB1 and CUL4 associated factor 5	protein-coding	6.63260956757908	6.31830536880796	6.34292729761705	6.06080841361618	5.68681553106243	6.4103962700673	5.61999417591292	6.04899675708033	-0.575532627984866	0.0459919686332904	0.220137336786294
Merged-chr8-25519380-3	chr8	25519283	25519483	+	861.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010206, exon 1 of 18)	5' UTR (NM_010206, exon 1 of 18)	624.0	NM_001079908	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	3.18745595670016	3.25867351491918	3.58591269162622	3.5179894521402	3.52985119775317	3.36454327426276	3.30280908135571	3.63162756213203	0.209562457419671	0.6940605618078	0.875729649706936
Merged-chr19-4113311-4	chr19	4113234	4113434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001276284)	TTS (NM_001276284)	8241.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	6.91367045652202	6.50547279545191	6.41626908144983	6.54519406001576	6.71181748509709	6.62840070662485	6.25137898023162	6.4816860730471	-0.100261987623664	0.668424364880841	0.862948051435654
Merged-chr10-127541373-3	chr10	127541275	127541475	+	859.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 80 of 88)	intron (NM_008512, intron 80 of 88)	-6816.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	2.77151627006781	2.72145926040403	2.70957381129213	2.17909215430636	2.55434302968132	2.75339910711803	2.63491526354822	2.82971853513177	0.378323736354062	0.616352591963733	0.834943450262974
Merged-chr2-158613748-3	chr2	158613653	158613853	+	923.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009508, intron 1 of 1)	intron (NM_009508, intron 1 of 1)	2995.0	NM_009508	22348.0	Mm.143404	NM_009508	ENSMUSG00000037771	Slc32a1	R75019|VGAT|Viaat	solute carrier family 32 (GABA vesicular transporter), member 1	protein-coding	3.71505891453223	3.78154595073525	3.29277330059985	3.51462241134705	3.42144954634704	3.78271404562189	3.75008143147347	4.10931928232024	0.593506968445697	0.254991902965097	0.566534590041286
Merged-chr4-107139990-2	chr4	107139890	107140090	+	964.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025617, intron 4 of 4)	intron (NM_025617, intron 4 of 4)	38376.0	NM_025617	66526.0	Mm.246956	NM_025617	ENSMUSG00000028619	Tceanc2	2210010B22Rik|2210012G02Rik|6330404A07Rik|AU015593|Tdeanc2	transcription elongation factor A (SII) N-terminal and central domain containing 2	protein-coding	2.67186011677497	2.54164103582344	2.80807025834029	2.90255083597134	2.85370403462226	2.97951684241073	2.92009031729498	3.09448701810377	0.95057231495355	0.143681984171839	0.422069298435482
Merged-chr12-98747463-2	chr12	98747363	98747563	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008506, intron 1 of 14)	intron (NM_001008506, intron 1 of 14)	495.0	NM_029334	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	3.58805185191558	3.40416012434033	3.23650157722746	3.2650224943282	3.93561670756383	3.41613106401513	3.41140240324929	3.68519978491707	0.868541852685281	0.0988696517832161	0.344693043736366
Merged-chr11-4704316-4	chr11	4704219	4704419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356391)	promoter-TSS (NM_001356391)	25.0	NM_197979	66152.0	Mm.269736	NM_197979	ENSMUSG00000059534	Uqcr10	1110020P15Rik|AA960494|Ucrc	ubiquinol-cytochrome c reductase, complex III subunit X	protein-coding	6.45446236786055	6.49346763876528	5.87280147153266	6.00934434782589	6.57569471258984	6.74216238734745	6.4224924464374	6.34674548105795	0.448782813750977	0.07770555712636	0.301449959161608
Merged-chr1-91413319-4	chr1	91413223	91413423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019479)	promoter-TSS (NM_019479)	-101.0	NM_001360899	55927.0	Mm.280029	NM_019479	ENSMUSG00000067071	Hes6	AI326893|bHLHb41	hairy and enhancer of split 6	protein-coding	8.02995160249442	8.14529251106995	8.16056257277711	8.50715809419493	8.31466569171979	8.03379971303764	8.21059375693154	8.13036391803672	-0.0685175574900047	0.703410212916679	0.880690314212345
Merged-chr1-65089213-4	chr1	65089114	65089314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6924.0	NM_144761	12965.0	Mm.440053	NM_144761	ENSMUSG00000073658	Crygb	Cryg-3|DGcry-3|Nop	crystallin, gamma B	protein-coding	6.14189212194169	6.50724948604959	5.85334828966367	6.33079851419136	5.99377320549106	6.1031905707182	5.82365976308834	6.05637599514216	-0.377769498691221	0.141157957860037	0.417965900516643
Merged-chr17-45585503-4	chr17	45585400	45585600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001199116, exon 13 of 13)	3' UTR (NM_001199116, exon 13 of 13)	6893.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	6.57547652146638	6.46211586627294	6.35022896862339	6.77677718667959	6.6054705836253	6.61896628216513	6.87535609638182	6.38325105901695	0.0969528650189644	0.673505766886122	0.865755277503246
Merged-chr12-16216440-1	chr12	16216340	16216540	+	970.8333130000001	f0_balb.idr	Intergenic	Intergenic	373330.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	3.83994223602286	4.44487553328885	4.10173084475424	4.26878287177176	2.9886197111881	3.12353685601385	3.15821615420006	3.08645922137019	-5.09717071383272	4.67675193368881e-08	2.15879718474731e-06
Merged-chr11-30986423-4	chr11	30986326	30986526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026527)	promoter-TSS (NM_026527)	-61.0	NM_001290667	68044.0	Mm.32656	NM_026527	ENSMUSG00000020309	Chac2	-	ChaC, cation transport regulator 2	protein-coding	6.55294391310512	6.92714396747686	6.90091401901153	6.87603803011995	6.74965952178619	6.84749597987951	7.19807766140607	6.97265225410001	0.169040911243761	0.428714177199817	0.719619064235486
Merged-chr9-70848585-3	chr9	70848471	70848671	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	86237.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	3.8340601374233	4.03773140722437	4.06641905019767	4.05325096220314	3.53375772303275	3.90283268634686	3.60050197212748	3.72667326014878	-0.929612804374941	0.0446241003901211	0.215687310576156
Merged-chr7-19665484-4	chr7	19665397	19665597	+	921.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019649)	promoter-TSS (NM_019649)	-467.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	4.83937672829059	4.30930508551622	4.62573024565515	3.73059800588324	4.93538728341751	4.83745475954463	4.64149620827474	4.41198545912083	0.629743740594169	0.166833397770355	0.458273771972873
Merged-chr2-128704505-8	chr2	128704365	128704565	+	962.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	B2_Mm2|SINE|B2	5550.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	4.13385717661112	3.73470656506397	4.60390398550745	4.44591481468251	3.80764615523989	3.93771817600947	4.20671373759313	4.34891074239534	-0.458639487562679	0.341794327424196	0.650755862859763
Merged-chr13-101844231-4	chr13	101844125	101844325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76008.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	6.15716456467913	5.97806011117803	6.39963516927079	6.45632034067747	6.20606588900125	6.35449045390719	6.16684775016677	6.30768160340456	-0.0233923482279844	0.922133678368806	0.971127316870055
Merged-chr14-14703631-3	chr14	14703502	14703702	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360513, intron 1 of 25)	CpG	577.0	NM_001360509	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	5.52016071520816	5.08318342026357	5.54636051962788	5.16616098522739	5.13429070854827	5.44258342543684	5.07701890959688	5.51721341901317	-0.0575161446372277	0.855223970491563	0.945541891823842
Merged-chr3-69316738-4	chr3	69316619	69316819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178726)	promoter-TSS (NM_178726)	-199.0	NM_178726	242083.0	Mm.40577	NM_178726	ENSMUSG00000027784	Ppm1l	3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175	protein phosphatase 1 (formerly 2C)-like	protein-coding	7.5523167507635	7.75625891715888	7.91276916958122	7.47313975985611	8.00797888427265	8.0973575880734	8.20247537338211	7.87146426096684	0.48359680597273	0.00843457015721266	0.069679130793646
Merged-chr15-58416056-5	chr15	58415946	58416146	+	869.900024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145959, intron 1 of 23)	intron (NM_145959, intron 1 of 23)	578.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	3.47791130137056	3.24705744106875	3.70497542824544	3.42119671737268	3.88333484403893	3.7162204407256	3.58220060965761	4.20970724733112	1.22191043242742	0.0157522810122744	0.108551806580761
Merged-chr3-126746635-3	chr3	126746549	126746749	+	791.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001025438, intron 4 of 18)	intron (NM_001025438, intron 4 of 18)	149698.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	4.08539445463952	4.80579315467747	4.48374484023088	3.48683360118427	4.51433667593213	4.16100160737761	4.25828365753228	4.08355210727313	-0.107118414758046	0.837252783729858	0.938216771954829
Merged-chr9-46098961-4	chr9	46098850	46099050	+	938.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	86130.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	4.67542031857419	4.26095684300619	4.40458144743674	4.59021890167036	4.6047841301576	4.0669570069975	4.42694119434703	4.52527203036212	-0.148910488704933	0.707244581453908	0.882414568664592
Merged-chr19-21273718-4	chr19	21273615	21273815	+	895.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009551, intron 1 of 5)	intron (NM_009551, intron 1 of 5)	1437.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	3.64099696978226	3.80118637250724	3.91074955100864	3.87644781402697	4.0654223421384	3.69746860052598	3.9868141775082	4.08907905057583	0.439710213494151	0.325061741928049	0.636574400327307
Merged-chr2-174329981-4	chr2	174329831	174330031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077510)	promoter-TSS (NM_001077510)	-139.0	NM_201616	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	5.80720526805246	5.6645350842249	5.98859078568724	5.75300885724116	5.84821253005063	6.24309248276811	5.6522053685777	5.91971585520813	0.201595542073141	0.445721787661772	0.731683604435051
Merged-chr6-97396291-3	chr6	97396172	97396372	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001346637, exon 5 of 23)	exon (NM_001346637, exon 5 of 23)	63014.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.46409788676304	3.14083993799497	3.25173474032232	3.33088452757088	3.18581830742445	3.10546892820287	3.18124736932647	3.41266584714885	-0.28344525990453	0.604894120287629	0.828616820075694
Merged-chr16-11909329-4	chr16	11909233	11909433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146067)	promoter-TSS (NM_146067)	90.0	NM_146067	223978.0	Mm.86360	NM_146067	ENSMUSG00000065979	Cpped1	C530044N13Rik	calcineurin-like phosphoesterase domain containing 1	protein-coding	6.17201852281053	6.23787822819061	6.7025607250525	6.0282454390831	5.57176087054555	6.13413874471187	6.05934283270552	6.55975604995044	-0.276978231110853	0.362226059438074	0.667431754717646
Merged-chr14-13368525-2	chr14	13368425	13368625	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028052, intron 2 of 5)	intron (NM_028052, intron 2 of 5)	83745.0	NM_028052	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	2.84713006923994	2.74289068947386	2.79154610190829	2.71669048920291	2.62154537819647	2.48927138783209	2.59777972122274	2.60448648162864	-0.995380122356228	0.137981090746424	0.413200221222589
Merged-chr4-126260164-4	chr4	126260067	126260267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2238.0	NM_013718	27096.0	Mm.8392	NM_013718	ENSMUSG00000028847	Trappc3	1110058K12Rik|AI835942|AU019197|Bet3	trafficking protein particle complex 3	protein-coding	7.7007882276577	7.97219236317312	7.63486450737176	7.62416237177985	7.53055206094716	7.58616207222297	7.9862681672825	7.65526317410794	-0.0519114761886013	0.786960718007773	0.917257197669312
Merged-chr2-167660800-6	chr2	167660711	167660911	+	942.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 1 of 5)	intron (NM_145538, intron 1 of 5)	733.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	4.11759050170506	4.46885848192397	4.83599682500875	4.19955925271392	4.30076110471949	4.13818441776296	3.94128342579721	4.25946101330662	-0.622675240441464	0.155207230902892	0.440817750658429
Merged-chr11-98053383-2	chr11	98053283	98053483	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146028)	promoter-TSS (NM_146028)	79.0	NM_146028	217154.0	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	2.63762218756797	2.74403258967689	2.81026490280029	2.52416274340631	2.53019506205904	2.30531634105167	2.56617110589651	2.36452847654679	-1.26829460757418	0.0889258673578312	0.325381910896163
Merged-chr11-58171657-4	chr11	58171611	58171811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175001)	promoter-TSS (NM_175001)	57.0	NM_175001	216767.0	Mm.259907	NM_175001	ENSMUSG00000020514	Mrpl22	E030011D16Rik|HSPC158|MRP-L25|Rpml25	mitochondrial ribosomal protein L22	protein-coding	5.77567422740584	5.96592737132852	5.5777235725655	5.4916354416581	5.5835371926125	5.6700439366545	5.34711048297502	5.49037767367242	-0.301222035985821	0.285909804246776	0.597550399520842
Merged-chr3-107204335-3	chr3	107204266	107204466	+	812.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	17366.0	NM_001111143	229697.0	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	4.35783409068834	3.75130019647085	3.56966341874801	3.91410237515521	3.76724764359299	3.68894553615332	4.26650356076599	3.68942610427573	-0.145456995213039	0.777593149420205	0.913262978014698
Merged-chr6-83774994-3	chr6	83774886	83775086	+	893.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009357, intron 2 of 5)	intron (NM_009357, intron 2 of 5)	826.0	NM_009357	21766.0	Mm.28371	NM_009357	ENSMUSG00000014748	Tex261	3110001O07Rik|AA409339|AI480706|AL033351|TEG-261	testis expressed gene 261	protein-coding	4.02370940263591	4.17498820429336	3.93107061896312	3.89816365872453	3.87343300140824	3.78093921787141	3.65180313583105	3.9762010244377	-0.509837159191737	0.254830161611705	0.566310450490533
Merged-chr6-124297505-4	chr6	124297390	124297590	+	897.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_A|LTR|ERVK	-7161.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	3.76595336732223	4.47723908039375	4.73270741968064	3.43142543631512	3.82668589316384	4.27239674605585	4.07675179769722	4.14024920649032	-0.302069703064411	0.583035392903016	0.816904287158464
Merged-chr14-17878628-4	chr14	17878531	17878731	+	987.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-103013.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	4.87223952792569	5.2116029472654	5.02332706524512	5.34921937891713	5.41696694217608	4.92825402059287	5.36321670114209	5.01995709376871	0.122636628754408	0.710748985965158	0.884203816607274
Merged-chr1-131022762-2	chr1	131022662	131022862	+	643.083313	f1_balb.idr|f1_c57bl6.idr	intron (NM_010548, intron 4 of 4)	intron (NM_010548, intron 4 of 4)	2917.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	3.13759140702506	2.97612364136396	2.72724256264572	2.98401523766925	3.20271409212349	3.36473158883442	3.18298239392892	3.30180436866939	1.16564321876717	0.0454853905985344	0.218492101202442
Merged-chr13-58452419-4	chr13	58452332	58452532	+	940.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49089.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	4.61769663511688	4.84734342901636	4.868808683541	5.15796594496761	5.12044554620651	4.75422312418276	5.61069009678632	4.93928787934936	0.473633301951928	0.202778923828404	0.505320783254999
Merged-chr19-34500962-4	chr19	34500868	34501068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 7 of 9)	RLTR11A|LTR|ERVK	-25833.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	6.39561715807925	6.82165319753399	6.15139124342728	6.26972655885467	6.35412137443949	6.3074749805072	5.89383632855386	6.1469905621541	-0.363327939579486	0.166474745425667	0.457775001145587
Merged-chr5-146832993-4	chr5	146832928	146833128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019647, exon 1 of 6)	5' UTR (NM_019647, exon 1 of 6)	138.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	6.63857172986446	6.74713004369161	6.46253682703761	6.20121080946482	6.33575979087082	6.95666857498335	6.41210777559373	6.54151318788659	0.0848565717391071	0.737651068682726	0.896392006995728
Merged-chr7-130943400-4	chr7	130943290	130943490	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019564, intron 1 of 8)	intron (NM_019564, intron 1 of 8)	7187.0	NM_019564	56213.0	Mm.30156	NM_019564	ENSMUSG00000006205	Htra1	AI429470|HTRA|L56|Prss11|RSPP11	HtrA serine peptidase 1	protein-coding	5.79083933186379	6.38524272348145	5.38642563979145	5.4107468497195	6.36175989606818	6.17291672625704	5.85738152598211	5.68432421745053	0.38293569219784	0.257874488274963	0.569693582005417
Merged-chr9-66907721-3	chr9	66907623	66907823	+	975.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	11982.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	4.16283467006013	4.57008715226499	4.93721567875478	4.52240667880057	4.12366756257276	4.18461810606433	4.09482587769778	4.25839890784696	-0.979266927696216	0.018401840554328	0.12116786390532
Merged-chr11-69261455-4	chr11	69261376	69261576	+	967.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24454.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	4.99238027707757	4.66768991247053	5.16058696017449	5.80541953963982	5.10434208812939	4.85252596927316	5.07123831441855	5.05936145503856	-0.416364552354327	0.284945712065573	0.596719806311822
Merged-chr14-52451312-3	chr14	52451217	52451417	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020514)	TTS (NM_020514)	924.0	NM_020514	57271.0	Mm.88824	NM_020514	ENSMUSG00000035626	Olfr1509	MOR244-3|Mor83|Or83	olfactory receptor 1509	protein-coding	5.54779085296976	4.70655122340497	5.74043716228006	5.66767980184059	3.4524442872034	3.90084401556499	3.82031434360016	3.83355454099111	-4.77106814877571	5.6467879954964e-15	9.10250279602157e-13
Merged-chr7-113759391-4	chr7	113759288	113759488	+	768.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6610.0	NM_145584	233744.0	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	3.90761272079373	3.83945991507961	3.57645809100279	3.92908118282921	4.27628533108987	4.07838295174509	3.62470833045751	3.8045114700644	0.422278509589716	0.380639377304043	0.682959506520613
Merged-chr1-91063331-4	chr1	91063233	91063433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	9889.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	5.52003891670169	5.18329741257033	5.49250652497598	5.5477625610608	5.689745201498	5.80335939915417	5.93642474750779	5.70024974171991	0.559582325652716	0.0386393536696294	0.197282157295068
Merged-chr15-102392590-4	chr15	102392501	102392701	+	804.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-13715.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	4.75589818203491	3.7857317296976	3.83262826516024	3.91116532014102	3.68625207371847	4.11799074913299	3.87167970060646	4.08563243960427	-0.481725986503539	0.349688462986995	0.657179883362987
Merged-chr11-5785911-4	chr11	5785804	5786004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2579.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	6.49377016789956	6.73567180395787	6.79946139530359	6.95123823948393	6.41542526942042	6.46795945893864	6.49556735928681	6.72519107293315	-0.346208177552074	0.116392066195857	0.37746814651699
Merged-chr16-27413486-3	chr16	27413395	27413595	+	619.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025615, intron 4 of 9)	intron (NM_001025615, intron 4 of 9)	24539.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	3.63402418957576	3.40178287887751	3.52803159083485	3.87089805047161	3.45003419637141	3.10013208106543	3.56795282020513	3.90625420520103	-0.280503277906806	0.626221252857966	0.840349205482018
Merged-chr3-30823667-3	chr3	30823573	30823773	+	955.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	30797.0	NM_001357528	69276.0	Mm.26017	NM_027016	ENSMUSG00000027706	Sec62	3100002M17Rik|AI844545|AW545092|Dtrp1|HTP1|Tloc1	SEC62 homolog (S. cerevisiae)	protein-coding	3.58936768922036	3.5705602015469	3.96522976872846	4.03395174986441	3.43447124670833	3.58018926389594	3.80092138594996	4.57598825277089	0.337705354580526	0.556339570617345	0.801921676291934
Merged-chr18-53232599-4	chr18	53232528	53232728	+	886.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_I-int|LTR|ERV1	-13034.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	3.6862091524534	3.45379798167423	3.89814548947721	4.1344002143933	4.01080786465223	3.68397250528388	4.06091082463758	3.98965580430303	0.314316165468836	0.529425871299492	0.785623534789054
Merged-chr11-86687567-2	chr11	86687467	86687667	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001098810, intron 1 of 1)	intron (NM_001098810, intron 1 of 1)	3486.0	NM_001098810	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	3.12135463426858	3.40797637882232	2.78323802578468	2.63082263348829	3.18888268613059	3.1733063031997	3.10975896585134	3.28803475725277	0.653610803117954	0.318700571669787	0.630539142678577
Merged-chr11-59208730-1	chr11	59208630	59208830	+	1000.0	f0_c57.idr	intron (NM_024210, intron 1 of 6)	intron (NM_024210, intron 1 of 6)	369.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	5.10863855320723	4.99083554386428	5.00963918289493	4.85821041437139	5.42071998800894	5.03938026230723	5.08445230887244	4.89804433583429	0.299253730300986	0.352946340281687	0.65984733419773
Merged-chr11-78512189-4	chr11	78512103	78512303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026389)	promoter-TSS (NM_026389)	-35.0	NM_199199	195040.0	Mm.383431	NM_199199	ENSMUSG00000051232	Tmem199	AI316787|AI848469|R74819	transmembrane protein 199	protein-coding	7.08558595856095	6.89387284246469	6.84241421899197	6.58118826185035	7.01820135362963	7.39592157839125	7.28405815126729	6.93316976834019	0.438426858251061	0.0454010272801245	0.218233368501619
Merged-chr5-19952561-4	chr5	19952453	19952653	+	978.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015823, intron 1 of 21)	intron (NM_015823, intron 1 of 21)	45035.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	4.93938072546397	4.41364155927156	5.71779994633695	5.56464346123122	5.05871985386425	4.87873341095174	4.87907277047082	5.00888224566014	-0.568099879728052	0.170415157343705	0.463560227942354
Merged-chr4-129058986-6	chr4	129058879	129059079	+	872.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	708.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	4.46698254390141	5.02667690283862	4.59324555278691	3.91051248902656	4.68325093532437	4.8431114856925	4.49001418420818	4.42020320391288	0.135203896706191	0.760790025784198	0.906374874389808
Merged-chr18-78830170-2	chr18	78830082	78830282	+	711.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_053099, intron 4 of 5)	Tigger7|DNA|TcMar-Tigger	-233232.0	NM_207651	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	3.28461780626984	3.24358607769526	3.2851012168122	3.42603118584336	2.92714404442662	2.8210837238743	2.85676212006055	2.86356267591972	-1.96896101068208	0.00188963100192381	0.0223685423392541
Merged-chr10-75499506-4	chr10	75499410	75499610	+	860.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17871.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	4.06116581772177	3.89824458084555	4.42867786301274	3.72579407585178	4.09458705760621	3.9227815547085	4.21847591178331	3.96121696622751	0.0396546054741184	0.93118122472819	0.975258944629761
Merged-chr12-70472864-4	chr12	70472753	70472953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	L1M2|LINE|L1	19699.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	6.09922602626335	6.19268535879147	6.23637742847768	6.24871605039877	5.86176736624818	6.00389970661996	6.10931017865189	6.01109334869138	-0.322473803770247	0.163777047233903	0.453545751276581
Merged-chr7-112238013-3	chr7	112237899	112238099	+	893.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001193305, intron 2 of 25)	intron (NM_001193305, intron 2 of 25)	12163.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	4.55957025563148	4.19693202186431	4.0185541292221	4.18387250515237	3.31517308286096	3.58420537816225	3.23364903020758	3.52807935368992	-2.72573536047923	9.69819957795265e-07	3.41229929688132e-05
Merged-chr11-6508673-4	chr11	6508583	6508783	+	989.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178440, intron 18 of 21)	MTD|LTR|ERVL-MaLR	12275.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	5.08801164027862	5.03852029369881	5.33835340163088	5.46402906759122	5.09296504734193	5.04282978636272	5.33946583786505	5.27678385319777	-0.125646527947451	0.686439409597782	0.871787672169905
Merged-chr1-43589198-4	chr1	43589094	43589294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141408.0	NM_024283	78896.0	Mm.50109	NM_024283	ENSMUSG00000026051	1500015O10Rik	Ecrg4	RIKEN cDNA 1500015O10 gene	protein-coding	5.40888594666453	5.44207673893193	5.37910626657684	5.872920123963	5.83207313147784	5.58545114926884	5.57954663970578	5.86284396024966	0.266834460703527	0.360542290372644	0.665897913449608
Merged-chr8-85024563-4	chr8	85024468	85024668	+	905.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019652, intron 1 of 6)	intron (NM_019652, intron 1 of 6)	719.0	NM_001357203	56495.0	Mm.41475	NM_019652	ENSMUSG00000052456	Asna1	1810048H22Rik|ArsA	arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	protein-coding	3.58599519029283	3.65056306521336	3.40062771606191	3.69497483992287	4.06552709253671	3.5815801558466	3.68243147722569	4.1004790185129	0.846470461364902	0.0865435756044817	0.320871193246765
Merged-chr3-127293062-4	chr3	127292969	127293169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	115989.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	5.28453571844688	5.29034488081882	5.34881428648264	5.48710341636091	5.58320575708185	5.55469417444573	5.64543718458685	5.69388066208137	0.432986775045418	0.109788420441098	0.365876223508832
Merged-chr1-170806369-4	chr1	170806276	170806476	+	972.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 9 of 15)	intron (NM_001081304, intron 9 of 15)	61395.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	5.75935368825515	5.08996801453867	5.39404411467303	5.52333034101291	5.03641765288675	5.17764808246053	5.52549858274102	5.10550410067367	-0.436578701175589	0.173455819376713	0.467525438026926
Merged-chr2-128701922-4	chr2	128701857	128702057	+	903.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	3042.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	4.24341985735387	3.84921035810081	4.33140434903716	4.46126435472296	4.24002038876528	4.00518383372931	4.26919474163596	4.62713081267616	0.132762936345634	0.762823675323325	0.907011913026374
Merged-chr2-124613635-4	chr2	124613559	124613759	+	989.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	3363.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	5.15896307877829	5.37003483102177	6.31435365288863	6.02678049644109	5.62274279116266	5.41621187070878	5.96993401155504	5.60430208738376	-0.224916411841489	0.526742772435672	0.783930077136318
Merged-chr17-23193695-4	chr17	23193603	23193803	+	946.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009555)	promoter-TSS (NM_009555)	-451.0	NM_001357697	22700.0	Mm.437934	NM_009555	ENSMUSG00000002617	Zfp40	CTfin12|NTfin12|Zfp-40	zinc finger protein 40	protein-coding	5.2778887242107	5.3843151473152	5.05652347545767	5.57606626695748	4.72043421667676	5.23185989879984	5.13118706593592	4.78460554982909	-0.711859757538924	0.0329334250555035	0.178114752832283
Merged-chr13-17695537-2	chr13	17695443	17695643	+	1000.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_138654)	promoter-TSS (NM_138654)	130.0	NM_025479	66308.0	Mm.291109	NM_025479	ENSMUSG00000012429	Mplkip	2810021B07Rik|C330007M08Rik|Ttdn1	M-phase specific PLK1 intereacting protein	protein-coding	5.9388799409728	5.87266597130941	6.25569677094226	5.70938763193677	6.05307558661545	5.87069456280181	6.0164835472833	5.93569328439956	0.0524123163660575	0.83884529291831	0.938853173799904
Merged-chr8-84975606-4	chr8	84975504	84975704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011563)	TTS (NM_011563)	3144.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	5.55955624841087	5.5823082755659	5.85780638241469	5.81157739713863	5.80058329624288	5.70799874416763	5.61326123669967	5.66357528929338	-0.0227177978501705	0.930608847134456	0.975032488374109
Merged-chr17-17867235-4	chr17	17867121	17867321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12033.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	7.53161684822269	7.60047875879342	7.57788414733587	7.72123626926996	7.57452504198582	7.55456775540752	7.87815986715636	7.26365078012997	-0.0367992414280278	0.848677320310386	0.942799665730853
Merged-chr6-57691682-4	chr6	57691548	57691748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025574, intron 1 of 1)	intron (NM_025574, intron 1 of 1)	430.0	NM_025574	66459.0	Mm.44201	NM_025574	ENSMUSG00000043162	Pyurf	2610022G08Rik|AI847956|Prey	Pigy upstream reading frame	protein-coding	6.31279729801907	6.40178728380144	6.57237364506201	6.58008860096508	6.50890414952008	6.56447900607703	6.67102087633466	6.16802777265722	0.0196613926769315	0.931097578614889	0.975254729027921
Merged-chr15-83464697-4	chr15	83464582	83464782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159509)	promoter-TSS (NM_001159509)	-76.0	NM_001358643	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	8.46021337334824	8.51733313353668	8.47649566130907	8.50026755757312	8.42292777899948	8.34091355198611	8.4951174730104	8.21988111667956	-0.14405399325779	0.338358012518453	0.647974082462358
Merged-chr13-62859413-4	chr13	62859329	62859529	+	809.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-1059.0	NM_007994	14120.0	Mm.391871	NM_007994	ENSMUSG00000021456	Fbp2	Fbp-1|Fbp1|Rae-30	fructose bisphosphatase 2	protein-coding	4.10878982455958	4.32103020677615	4.204025593643	3.75186034942363	4.10898149920274	4.54410214438517	4.27244414211622	4.20140214632969	0.467076768998624	0.280083139417612	0.592188854317724
Merged-chr5-79812221-4	chr5	79812148	79812348	+	872.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MURVY-int|LTR|ERV1	-1208323.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	4.16783658263568	3.91627641059137	4.21269633605746	4.51431296972696	4.00303647411258	3.9870186949402	4.19385941134915	4.07272228037	-0.441624115280667	0.309348532278372	0.621622697166796
Merged-chr10-60379760-4	chr10	60379694	60379894	+	869.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 33 of 68)	intron (NM_001252635, intron 33 of 68)	-19932.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	4.25385519727362	4.24464429518	4.4102489940011	3.68239425341889	3.72279138841435	4.0500157230078	4.05902026083756	4.07445156961519	-0.490517754294241	0.300169055780395	0.612251288689364
Merged-chr12-111575394-6	chr12	111575288	111575488	+	891.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045295)	promoter-TSS (NR_045295)	878.0	NM_022801	17169.0	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	3.84858332261865	3.46815541952883	3.35417407122662	3.5081788245311	3.92245047642229	3.77042368035449	3.83196450577441	3.53882614106299	0.686025120758855	0.163496528625159	0.453209728600755
Merged-chr6-84584502-2	chr6	84584402	84584602	+	928.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177713, intron 2 of 6)	CpG-12217	9308.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	3.70858257803585	3.65434281424074	3.70911716469172	3.44992335362945	3.57768207952962	3.82854939909012	3.47344936987834	3.89674683616109	0.238342891429886	0.623640657310183	0.839057402560226
Merged-chr7-25077093-4	chr7	25077006	25077206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001168506, exon 2 of 3)	5' UTR (NM_001168506, exon 2 of 3)	299.0	NM_175477	232976.0	Mm.41568	NM_175477	ENSMUSG00000045252	Zfp574	A630056B21Rik|Znf574	zinc finger protein 574	protein-coding	9.08131473226345	9.18753522058527	9.3295219573977	9.11085224707615	8.95368134881934	9.01879811812322	8.92416906356316	8.78605013087947	-0.316763088541613	0.0303859091772503	0.168677268718595
Merged-chr17-88349384-3	chr17	88349317	88349517	+	872.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-91287.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	3.06258529930308	3.31931985936171	3.28206185529378	3.27308372391739	2.89580718455617	2.90296575454581	3.11011736571812	2.86928233360099	-1.26799860313177	0.0354611043749834	0.186934602625335
Merged-chr5-43877100-2	chr5	43876984	43877184	+	791.0	f0_balb.idr|f0_c57.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	8275.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	3.82349485526823	4.33019823934352	4.23693062255228	3.345764741131	3.97058449750621	3.77292660853004	4.1363817045413	3.64946136671161	-0.255985090199638	0.635481282425409	0.845728109373985
Merged-chr12-79750398-4	chr12	79750269	79750469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	174364.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	7.62533142028593	7.81179141186697	7.26068243666806	7.29611091825872	7.36279072872282	7.45929595749509	7.80247430257374	7.45138379933246	0.0169862509091498	0.936282665632782	0.97690766292493
Merged-chr1-93446182-4	chr1	93446042	93446242	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301364)	promoter-TSS (NM_001301364)	-441.0	NM_001301364	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	4.79779797331811	5.00541159479508	5.43509011294372	5.35924380299309	5.16142078621536	4.80468904316879	5.03464675318209	5.05578373335483	-0.29801940645726	0.377202265315864	0.679896016256279
Merged-chr10-62111061-4	chr10	62110964	62111164	+	988.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027251)	promoter-TSS (NM_027251)	-14.0	NM_001358252	69894.0	Mm.294126	NM_027251	ENSMUSG00000020083	Fam241b	2010107G23Rik|AA545165	family with sequence similarity 241, member B	protein-coding	4.83020363905648	4.51507634550131	4.72131708542851	4.48250498526656	4.56725285474691	4.60147672737383	4.90762860723722	5.08025579923059	0.357598077830087	0.32381286711724	0.635324498514402
Merged-chr16-92019522-4	chr16	92019412	92019612	+	983.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-38810.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	5.08955048439978	4.61216842441944	4.39016568221142	4.85009355817571	5.29605557377129	4.71560032797308	4.7263246017819	4.99381259831588	0.406492625016383	0.283188627568361	0.59534181941309
Merged-chr4-117136195-4	chr4	117136091	117136291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2228.0	NM_001313916	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	7.00581044864709	6.79257211341068	6.65553774011846	7.03762196169152	6.21096933256186	6.54778671833651	6.06665521901184	6.36529779158048	-0.851546954989959	0.00018766880046125	0.00345080794317523
Merged-chr1-58696261-4	chr1	58696142	58696342	+	747.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175370)	promoter-TSS (NM_175370)	-253.0	NM_175370	108812.0	Mm.442063	NM_175370	ENSMUSG00000047528	Als2cr12	4933405P16Rik|4933425F06Rik	amyotrophic lateral sclerosis 2 chromosome region 12	protein-coding	3.59560324584412	3.62574318832411	3.65451377322286	3.95212245842894	4.08485640924557	3.77209174906437	3.98528102049128	3.86300298910933	0.579727280558259	0.219259792727112	0.526748085921778
Merged-chr10-81292834-4	chr10	81292733	81292933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008844)	promoter-TSS (NM_008844)	-130.0	NM_008844	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	9.13472045368483	9.42703789511683	9.12304663883344	8.99442916590869	9.21129951421133	9.29440090250423	9.25703228924103	9.06045333447388	0.0377801707567076	0.811925422772592	0.927328503514551
Merged-chr11-49204133-4	chr11	49204036	49204236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024846, intron 1 of 4)	intron (NM_001024846, intron 1 of 4)	636.0	NM_009562	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	5.66848450329601	5.89476203276562	5.53355321006608	5.45591363782271	5.83433464222085	5.73807571225697	5.58855786024279	5.9209781285462	0.230618057874474	0.393938105502569	0.693118784119821
Merged-chr6-54021462-5	chr6	54021406	54021606	+	847.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18426.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	3.06702945345317	3.10262733233511	3.13925954738583	3.0314240210288	3.38751641083389	3.57193806818486	3.59279230995869	4.09245683921359	2.08065899311449	0.000166507898127693	0.00312137626569161
Merged-chr3-142393838-1	chr3	142393738	142393938	+	549.0	f0_balb.idr	intron (NM_001190854, intron 1 of 12)	intron (NM_001190854, intron 1 of 12)	1858.0	NM_001190853	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	3.18221324716864	3.24648550134362	3.06747538728274	3.12754275902725	3.03776721703748	3.04786837189364	3.11481666580309	2.94012600442422	-0.49330508158485	0.384842297785265	0.686289940705339
Merged-chr1-37555772-4	chr1	37555692	37555892	+	871.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14776.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	3.69570212661728	3.93492375593021	4.10478882362091	4.05929355729577	3.85127508200831	3.68889314416857	4.16995740103452	4.22683486600119	0.102845148398519	0.82353099557034	0.932313798231142
Merged-chr14-51907380-3	chr14	51907277	51907477	+	735.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360266, intron 11 of 15)	intron (NM_001360266, intron 11 of 15)	4612.0	NM_001360269	29811.0	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	3.02548874003129	3.19211356656804	3.36860941830878	2.91754832558364	3.44823384732391	3.60554426483064	3.88905699419224	3.90602393407302	2.08186711556697	0.000149099589677077	0.00283991428783107
Merged-chr13-96586503-3	chr13	96586404	96586604	+	757.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023420, intron 3 of 17)	ORR1D1|LTR|ERVL-MaLR	43769.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	3.28935795828572	3.56329413568724	3.44255114917941	3.3972511928085	2.81327933828672	2.95204073879574	2.90835977672529	2.91548296346759	-2.38981648884245	0.000221041318158747	0.00395185132903537
Merged-chr10-120227787-3	chr10	120227672	120227872	+	880.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025431, intron 1 of 2)	intron (NM_025431, intron 1 of 2)	712.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	3.33156345821873	3.85141636175431	3.45776561565757	3.7393530620538	3.68731233673032	3.51015872307179	3.55891880266354	3.81936183050194	0.0921613838490646	0.857050191236969	0.94616653253742
Merged-chr12-8348253-4	chr12	8348128	8348328	+	831.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34795.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	3.81508804729831	4.13939057679257	4.11985981382321	4.57637272125156	3.93245968216362	3.87753698277559	4.18796958079577	3.81356674526111	-0.654256368832192	0.164856879604951	0.455101917212256
Merged-chr4-59452688-4	chr4	59452585	59452785	+	983.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	-14052.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	5.22917264961494	4.75135598567758	4.86059611192118	5.21594392636776	5.00518328314359	4.91757529670741	4.91261630785252	5.48775147745846	0.119469602798919	0.731537010792972	0.893692037814653
Merged-chr13-67194522-4	chr13	67194421	67194621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001048204)	promoter-TSS (NM_001048204)	15.0	NM_001048204	218311.0	Mm.82396	NM_183156	ENSMUSG00000051037	Zfp455	3732412P20Rik|Rslcan-10	zinc finger protein 455	protein-coding	6.64664175467925	6.22478527457072	6.70788459397507	6.32975597344181	7.0924570925815	6.51402496201898	7.17222741831204	6.56375822553765	0.562910406749201	0.0270460202972853	0.156460518891458
Merged-chr5-140389312-4	chr5	140389195	140389395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172277)	promoter-TSS (NM_172277)	13.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	7.06182719390529	6.95866095780197	6.65123030528039	6.43991238594978	7.08646539154727	7.2037456537161	6.97989458612368	6.99819108970885	0.39379916063863	0.0785028694081867	0.303220863572603
Merged-chr2-150896045-4	chr2	150895926	150896126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	MLT1A0-int|LTR|ERVL-MaLR	8705.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	6.66747947453273	6.62753093446193	7.27925410292435	7.44898621746553	6.58287834430427	6.84669080847793	6.91929584039928	7.0478929755995	-0.295563495768749	0.259576079887351	0.571396571681358
Merged-chr15-57881003-4	chr15	57880907	57881107	+	791.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024207, intron 2 of 7)	intron (NM_024207, intron 2 of 7)	11411.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	3.5027655192867	3.93223357388908	3.67309198529612	3.48355490308581	3.75613666556482	3.6194670655121	3.60479215941243	3.91180883270021	0.228825179413133	0.638815187864802	0.84740814523517
Merged-chr12-79130799-4	chr12	79130678	79130878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009705)	promoter-TSS (NM_009705)	-10.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	7.48697899816172	7.51880299333679	7.45167896278506	7.4471265505799	7.36417585211153	7.31418469967886	7.02743701787346	6.8672118367123	-0.416972191273303	0.0332363669918882	0.179127081556418
Merged-chr11-3177400-2	chr11	3177278	3177478	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 6 of 32)	intron (NM_030207, intron 6 of 32)	16085.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.52593352931302	5.5867023574378	5.96743608179266	5.43561457114859	3.40999379699044	3.77269402326509	3.69827264847891	3.78828884771878	-6.95208725595639	8.53605995095174e-13	9.20588198861809e-11
Merged-chr13-94721956-2	chr13	94721856	94722056	+	947.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66987.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	3.19763092361903	3.03241173333367	3.006325615793	2.78499057000778	3.42356141145325	3.25045184380876	3.29822696255181	3.51105258958038	1.46925463226925	0.00916313733724779	0.0741162446054501
Merged-chr1-55613112-4	chr1	55613007	55613207	+	871.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	207161.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	3.98735237687113	3.79049204557189	4.29918216366436	4.42505436054672	4.13758124935022	4.00454248695907	4.0202537023443	3.93434767856731	-0.346209353972453	0.442828518406609	0.72958107334361
Merged-chr7-28382064-4	chr7	28381962	28382162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2834.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	9.0014229410293	9.12471615093057	8.77629830902802	8.48096796109676	8.85698837245972	9.11730719783988	8.95235185406244	8.48860746418128	0.00985695866820951	0.961267455977389	0.986118879213657
Merged-chr15-76080942-4	chr15	76080854	76081054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133691)	promoter-TSS (NM_133691)	-8.0	NM_028364	67959.0	Mm.29965	NM_028364	ENSMUSG00000002524	Puf60	2410104I19Rik|2810454F19Rik|SIAHBP1	poly-U binding splicing factor 60	protein-coding	7.35727864072166	7.62509603797591	6.71201732051614	6.93644288232631	7.57457436108718	7.70550987111171	7.41880944479675	7.54947862824508	0.483095132756322	0.0418580069167098	0.207263586817373
Merged-chr8-37011867-4	chr8	37011776	37011976	+	937.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126063, intron 1 of 2)	intron (NR_126063, intron 1 of 2)	12362.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	5.42011976318318	4.65307680604111	5.23411644849504	5.59034223823313	4.64972858197704	4.319132724697	5.29053693587582	4.7873461154233	-0.89485687138141	0.0326263935040522	0.176978666607601
Merged-chr5-123153042-4	chr5	123152941	123153141	+	927.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040398, intron 7 of 16)	MER3|DNA|hAT-Charlie	10848.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	4.25818430768739	4.07832044011924	3.76853580993968	4.04929481031426	4.22301708181466	3.88876475794521	4.11217269396968	4.21478951643794	0.18710207237677	0.662401436177216	0.860025750147184
Merged-chr11-96278963-4	chr11	96278857	96279057	+	715.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2948.0	NM_010461	15416.0	Mm.4822	NM_010461	ENSMUSG00000056648	Hoxb8	Hox-2.4	homeobox B8	protein-coding	3.61468832030932	3.72162155452447	3.42800659529813	3.57964059310901	4.07647183092088	3.84722160992991	4.22579607659599	3.61324525724236	1.08442502092799	0.023715132013441	0.143234567805237
Merged-chr5-88500668-1	chr5	88500568	88500768	+	642.0	f0_balb.idr	intron (NM_017468, intron 9 of 9)	intron (NM_017468, intron 9 of 9)	12693.0	NM_017468	13801.0	Mm.8014	NM_017468	ENSMUSG00000029286	Enam	abte	enamelin	protein-coding	3.04197473976274	2.99573128059996	3.15779663824849	2.97726726218089	3.19414996057052	2.95324379205433	3.14549191070746	3.04085173321275	0.213476716508938	0.707000665554225	0.882312931718287
Merged-chr14-70860786-4	chr14	70860697	70860897	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045939, intron 2 of 3)	MTD|LTR|ERVL-MaLR	7864.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	5.76823198388949	5.46882573531131	6.23954454749119	6.17933212589049	4.77387297986671	4.74263353658668	5.06292164609595	4.74797453032555	-2.02489955723874	2.0055193096333e-09	1.21697236948328e-07
Merged-chr16-33062414-4	chr16	33062300	33062500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172823)	promoter-TSS (NM_172823)	-121.0	NM_172823	239833.0	Mm.131951	NM_172823	ENSMUSG00000022802	Lmln	5330415H22Rik|AI465495	leishmanolysin-like (metallopeptidase M8 family)	protein-coding	8.12269673599299	8.14908296792305	8.18545594349969	8.18743620298463	8.14320447416102	8.17583458032114	8.36023255358883	8.01383539286281	0.0207631412768085	0.896107326871612	0.960994089571403
Merged-chr19-14587410-3	chr19	14587296	14587496	+	940.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302951, intron 4 of 19)	intron (NM_001302951, intron 4 of 19)	9817.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	3.81909149304369	3.76751970455945	4.47109182760417	4.17221878524788	3.89012922323663	3.57257444086479	3.6361398136608	3.86954346213142	-0.93724365552392	0.059861532695085	0.258104401343739
Merged-chr2-119029469-4	chr2	119029427	119029627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199310)	promoter-TSS (NM_199310)	-134.0	NM_199310	269336.0	Mm.292465	NM_199310	ENSMUSG00000039983	Ccdc32	Gm631	coiled-coil domain containing 32	protein-coding	7.06615995953995	7.2121085245512	6.80629913047924	7.05783294752471	7.12612389559926	6.87810221555859	6.9213934734981	6.75720989892468	-0.153723514711031	0.453654055241985	0.73762335852288
Merged-chr10-117142145-2	chr10	117142045	117142245	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 1 of 9)	intron (NM_177798, intron 1 of 9)	6329.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	3.51385788061541	3.8179593003562	3.21020075152981	3.02729116203768	3.50450291502831	3.39223501752781	3.82889916130428	3.39904097476534	0.379745792810233	0.513775668376741	0.776645302351569
Merged-chr3-96499760-4	chr3	96499698	96499898	+	884.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25387.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	3.71396074010483	3.52939882894102	4.01173070107226	3.82917160803319	3.61744161485834	4.17980248234158	3.75367579122083	3.96425477788989	0.303696447367098	0.528965187936606	0.785359737535491
Merged-chr14-55643276-6	chr14	55643214	55643414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360063)	promoter-TSS (NM_001360063)	57.0	NM_001360063	74140.0	Mm.132857	NM_028780	ENSMUSG00000002320	Tm9sf1	1200014D02Rik|AI893436|MP70	transmembrane 9 superfamily member 1	protein-coding	5.03095141775832	5.42961825921783	5.60152081688319	5.02224837262764	5.6543076630252	5.72392766282169	5.43928342217427	5.98879560280401	0.746607746487684	0.0155845059251956	0.107739855016463
Merged-chr13-93300783-4	chr13	93300706	93300906	+	947.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2951.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	4.74917588201984	4.67467385300385	4.95892533848183	5.09276033892482	4.6946576122462	4.7643631131428	4.68954551797528	4.49714804515504	-0.476197784544798	0.172939308400431	0.466751868677598
Merged-chr10-111471334-4	chr10	111471219	111471419	+	966.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1908.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	5.06196180740865	4.74020965210653	5.06281626601218	5.17104132239191	4.92569893088444	4.81871953714144	5.37835236210984	5.02608137598407	0.0516631853077026	0.877737279625337	0.954305337362557
Merged-chr11-12535741-4	chr11	12535646	12535846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70786.0	NM_001282993	12808.0	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	5.66841551347501	6.24306587763074	6.06528546187006	6.09349724604896	5.99475400654069	5.76328363545395	5.46682796624923	5.8900823413533	-0.380922817658514	0.166132197759271	0.457186302118969
Merged-chr9-40343949-3	chr9	40343844	40344044	+	684.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040728)	TTS (NR_040728)	2301.0	NM_001357623	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	3.63491414172401	3.40010324423855	3.54054501901071	3.47843191850447	3.11409944101075	3.31625868978903	3.06087118093662	3.32439667141942	-1.143204020675	0.0367670946949199	0.190955493125845
Merged-chr12-102745036-4	chr12	102744908	102745108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001324515, exon 2 of 2)	exon (NM_001324515, exon 2 of 2)	1248.0	NM_177140	320351.0	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	6.49865021618568	6.62085156390927	6.56524150863013	6.66078027274953	6.75223638750949	6.26582738889823	6.39791144016936	6.60746220313212	-0.0889318534349437	0.688974780918366	0.873078401014891
Merged-chr13-42367802-4	chr13	42367697	42367897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66321.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	6.80235994632144	6.98581451807337	7.02665366539776	7.08167073444617	6.90510579934728	6.8447006084026	7.03820458144962	6.67834297774242	-0.154206318850212	0.441141909696781	0.728396857622944
Merged-chr10-128696432-4	chr10	128696330	128696530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177411)	promoter-TSS (NM_177411)	-162.0	NM_177411	19344.0	Mm.12815	NM_011229	ENSMUSG00000000711	Rab5b	C030027M18Rik	RAB5B, member RAS oncogene family	protein-coding	9.16084783318829	9.43307938603395	9.30044923249637	9.3037952677434	9.33788991454384	9.44012701589318	9.42315485908361	9.31500211122309	0.0922496400390541	0.508155869379248	0.773376095844373
Merged-chr1-80636445-3	chr1	80636343	80636543	+	939.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	28909.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	4.35095994163203	4.05542349822901	4.05179388006757	4.32794721037236	4.15046220202655	3.90462280069147	3.98602632206948	3.94909624098207	-0.527832735183029	0.213830652497137	0.519409344234163
Merged-chr2-128870916-4	chr2	128870826	128871026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024237, intron 1 of 7)	intron (NM_024237, intron 1 of 7)	6994.0	NM_024237	70370.0	Mm.5107	NM_024237	ENSMUSG00000027386	Fbln7	1600015H20Rik|AI464334|TM14	fibulin 7	protein-coding	6.35258618650097	6.90177263531526	6.95572438311803	6.6205763884154	6.08330454758912	6.2901270482657	6.28390925677566	5.91532399142479	-0.856445723023305	0.000518604633868784	0.00794798496533568
Merged-chr3-109478462-4	chr3	109478355	109478555	+	937.037476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-95552.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.55241440081376	4.70121943496384	4.63608666502434	4.42290997878302	4.90419178861141	5.02475456597391	4.61475272348577	4.7485492912941	0.56276666758188	0.104620866860483	0.355710947325641
Merged-chr8-128551568-4	chr8	128551484	128551684	+	706.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-134070.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	4.15027938941671	4.16904273377729	3.79088905599624	4.33618026024353	4.17783745628091	4.1312821564022	3.99209588262636	4.10274085377327	-0.0943008673968809	0.826408792684225	0.933439367057084
Merged-chr2-160086188-3	chr2	160086052	160086252	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69499.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	4.10635658230254	4.77122592466962	4.4129401289642	4.21056449994584	3.91663704087904	4.41978565116114	3.87824904021503	3.77073191956052	-0.965247758391925	0.0393488214430535	0.199729712721608
Merged-chr7-100950683-4	chr7	100950589	100950789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	L2|LINE|L2	13677.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	7.56964054289551	7.59174398676859	7.98607934854413	7.79127390945631	6.99456744949828	7.2990820628979	7.59357038974292	7.37621295780821	-0.556752199671373	0.00726321962562629	0.0625440006934979
Merged-chr14-78701279-3	chr14	78701149	78701349	+	995.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081336, intron 2 of 29)	intron (NM_001081336, intron 2 of 29)	31480.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	4.28761620666725	4.41929665875466	4.44112822476492	4.74299218999047	3.40421553702784	3.73516207480913	3.6646335434835	3.67614538223767	-2.61104809814034	1.41473548854117e-07	5.87854391937374e-06
Merged-chr9-70838695-4	chr9	70838574	70838774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	96134.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	7.73642164338958	8.06078939515935	7.80060588903716	7.68458204601275	7.79754213451359	7.6763355239559	7.99251024228057	7.57829884372648	-0.070300121518756	0.705606825063965	0.881790297238375
Merged-chr19-9931653-2	chr19	9931548	9931748	+	1000.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-32115.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	6.30491658606388	6.12055091192804	6.0270565340584	6.14172844610133	6.25424874334882	6.38837865982856	6.10258068368225	6.14984916553564	0.117551257163716	0.607824069372951	0.830283203337722
Merged-chr17-21962683-4	chr17	21962590	21962790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199048)	promoter-TSS (NM_001199048)	131.0	NM_001025373	74670.0	Mm.26540	NM_001025373	ENSMUSG00000053347	Zfp943	4930432O21Rik	zinc finger prtoein 943	protein-coding	6.23727289910225	6.35718470061628	6.63180403907345	6.00981182856442	5.96837664842295	6.06453045778111	6.44940196722582	6.32663473484575	-0.157199635745552	0.548384453988574	0.797382448842745
Merged-chr4-34386558-4	chr4	34386451	34386651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164064.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	7.37704689980377	7.26450908807189	7.10249782973415	7.30587257239859	7.23640934262412	7.206371904884	7.09018085240154	6.55798662919612	-0.290550902315465	0.181678126341983	0.478312892250924
Merged-chr2-91972363-4	chr2	91972261	91972461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58B|DNA|hAT-Charlie	-8798.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	8.2818463352608	8.30444180882597	8.42710455284442	8.27805308374935	8.14499057532312	8.30438625178502	8.2272950572854	8.37554336421952	-0.075914311197292	0.621405521459833	0.83781985513211
Merged-chr19-42147946-4	chr19	42147890	42148090	+	893.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183195, exon 1 of 2)	exon (NM_183195, exon 1 of 2)	601.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	4.36648723988253	4.03249502370102	4.16603225057814	4.10237381251804	3.90677462454623	3.87915052897454	3.9108334908805	4.11906549215275	-0.563161762515964	0.185221836726582	0.483068485869903
Merged-chr11-118216099-6	chr11	118216018	118216218	+	944.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	MTD|LTR|ERVL-MaLR	-3376.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	4.3060226685556	4.56659170321181	4.5381983713059	4.41418667273205	3.90547187134414	3.85247632612953	4.15461336327677	3.96754899917462	-1.25014734127944	0.00266212545743516	0.0291116036157286
Merged-chr4-101653624-4	chr4	101653536	101653736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175036, intron 2 of 3)	MTD|LTR|ERVL-MaLR	5853.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	5.90598362401611	5.12364724731337	6.06314672907544	6.00607695472547	5.40545603602883	5.38228924699886	5.52020288202051	5.45857559979107	-0.651552442109269	0.0403557254162068	0.202944763275412
Merged-chr9-115777291-3	chr9	115777185	115777385	+	961.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-132170.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	3.61025267049582	3.49118849994551	3.80188985300862	3.61308688022492	4.67370412058196	4.29590196531222	4.68708051635924	4.25084127549003	2.26124878784131	2.98274835605277e-07	1.15762838187285e-05
Merged-chr6-31208420-4	chr6	31208318	31208518	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	10056.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	6.04594564393669	6.17323508133542	5.89835167078979	6.15596945947831	5.95885398695372	5.26120341807797	5.84559455509462	5.47032244367279	-0.639815491621022	0.0245408244994652	0.146539719029046
Merged-chr15-28025148-4	chr15	28024988	28025188	+	942.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	CpG	760.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	4.6675935972536	4.39188288986643	4.8133349345471	4.49350246048662	4.43132144369382	4.76346911147052	4.29931478081847	5.08491330796001	0.177192719734129	0.655756575182525	0.85629437016692
Merged-chr8-41375689-4	chr8	41375546	41375746	+	775.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019734)	promoter-TSS (NM_019734)	-949.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	3.76992359296977	3.80368524037487	3.72287295150812	2.86743303638508	3.58222195921541	3.37898615927712	3.65728849994752	3.5104996587645	-0.201265797131673	0.741059569723425	0.898139463026673
Merged-chr7-4355568-1	chr7	4355468	4355668	+	554.0	f1_balb.idr	Intergenic	Intergenic	17844.0	NM_010746	17086.0	Mm.240231	NM_010746	ENSMUSG00000062524	Ncr1	Ly94|NKp46	natural cytotoxicity triggering receptor 1	protein-coding	3.01960620540074	2.99343642437559	3.02005019562086	2.58570439612249	2.79599357526373	2.7515733560636	2.63797369721565	2.71443475315311	-0.856684396883464	0.203070696244339	0.505715803231957
Merged-chr4-126467907-4	chr4	126467801	126468001	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153403, intron 1 of 18)	intron (NM_153403, intron 1 of 18)	682.0	NM_001317174	236511.0	Mm.30800	NM_153403	ENSMUSG00000041530	Ago1	Eif2c1	argonaute RISC catalytic subunit 1	protein-coding	4.77459754491253	4.59701193693442	5.00417480273577	4.75564868972974	4.74413628087571	4.71475878132301	4.38433823683592	4.44763517983035	-0.422257570024527	0.242695764789202	0.553538895216951
Merged-chr16-67647085-3	chr16	67646961	67647161	+	770.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-26153.0	NM_178721	239857.0	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	3.18914006452467	3.15027262403295	3.13677152199898	3.49901999728693	2.79682941309305	2.63561721543682	2.60749331364066	2.68962566809001	-2.8680988285828	0.000208575803368812	0.00376998910817385
Merged-chr10-24630794-4	chr10	24630692	24630892	+	868.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35350.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	3.88113517106336	3.45333233567818	3.63223941048828	3.84802550167052	3.63419777215511	3.6330752005933	3.67141960184551	3.87932318145658	-0.044314852391987	0.926810190261954	0.973143863883399
Merged-chr1-186722108-4	chr1	186721977	186722177	+	929.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026041, intron 4 of 4)	intron (NM_026041, intron 4 of 4)	-16088.0	NM_001329107	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	4.555698755966	4.81552546808346	4.63481617891287	4.77199114997485	4.33437073706088	4.36499466900416	4.49480620020082	4.51246768075449	-0.631550520581761	0.0790870318129566	0.304321323246537
Merged-chr11-70280663-4	chr11	70280579	70280779	+	860.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25309.0	NM_007440	11684.0	Mm.12286	NM_007440	ENSMUSG00000000320	Alox12	9930022G08Rik|Alox12p|P-12LO	arachidonate 12-lipoxygenase	protein-coding	4.20925783282329	4.3146425052649	4.20991356815153	4.03109684557822	3.99872351290072	3.7970002344471	4.49669019455579	3.96753856462791	-0.24590413187524	0.579850289773012	0.815494836491523
Merged-chr2-164940574-4	chr2	164940488	164940688	+	884.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7631.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	3.62950744133182	3.92785901827724	3.90922485227981	4.15977561066944	4.08728135232713	4.03017780005999	3.9888292942666	3.90697933341093	0.187920565732183	0.677654307207468	0.86777801477479
Merged-chr14-33213960-4	chr14	33213851	33214051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2872.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	5.35114566761015	5.72593933112307	5.31842066291276	5.50528683081489	5.86981534075703	5.89969062474909	6.14654340213547	5.90504041339404	0.764993471738491	0.00398654212765732	0.0399602988458696
Merged-chr16-31290464-4	chr16	31290358	31290558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-15181.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	6.76918338245225	6.55266764655872	6.28763200292756	6.42635622984717	6.80705223850431	6.75280850473729	6.65048370611233	6.79288162539515	0.344473570699571	0.107293336298112	0.361382260156614
Merged-chr13-24297532-2	chr13	24297432	24297632	+	691.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16742.0	NM_026825	68732.0	Mm.211047	NM_026825	ENSMUSG00000021338	Carmil1	1110037D04Rik|AI425970|CARMIL|CARML1|D130057M20|Lrrc16|Lrrc16a	capping protein regulator and myosin 1 linker 1	protein-coding	2.62690526513827	2.9696002240367	2.4773698215915	2.87222172035326	2.74223922540485	2.86797840233647	2.81438308262363	2.93944305405445	0.38377948130951	0.573742277422098	0.811973307930812
Merged-chr16-33902102-4	chr16	33901999	33902199	+	958.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 7 of 14)	intron (NM_001145884, intron 7 of 14)	64939.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	4.76359518579606	4.27692505917608	4.76437116514591	5.35692071169151	4.68044531191072	5.05088183647868	5.11087823552458	4.90935003684847	0.148477545636237	0.718898027588503	0.887684154524562
Merged-chr9-20878297-4	chr9	20878197	20878397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145154, exon 2 of 6)	exon (NM_145154, exon 2 of 6)	1413.0	NM_145154	70726.0	Mm.34019	NM_145154	ENSMUSG00000038742	Angptl6	6330404E11Rik|AGF|ARP3|Arp5	angiopoietin-like 6	protein-coding	8.89197633172067	9.23853389457776	8.90484712950382	8.78759491949494	9.10197636522001	9.3374254654841	9.0850844273754	8.9144834159356	0.189025887010844	0.271706695380633	0.583281843628624
Merged-chr9-41072874-4	chr9	41072748	41072948	+	954.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	6658.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	4.51067324850501	4.3628279135042	4.20912566510629	4.5364197651836	5.08735093423592	5.00257938648764	4.80659317268698	5.16453415837512	1.24666675973882	0.000413632337531027	0.00661022365359698
Merged-chr2-75823983-4	chr2	75823876	75824076	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8201.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	4.79676723005132	4.62044587404427	5.00123865146179	4.58251813230598	4.84864051085278	4.81629490007424	4.7747659297	4.83063747138903	0.154729403584256	0.648178016709008	0.852019592695027
Merged-chr15-84235869-4	chr15	84235769	84235969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	3826.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	8.16772970946862	8.07998746735605	7.85385322869578	8.24199290331639	8.14453217876645	8.06227580237386	8.27297496146553	8.35938721304212	0.145476706874678	0.396648460674762	0.695320898534295
Merged-chr5-33033386-4	chr5	33033303	33033503	+	881.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14587.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	3.8424768467918	4.65032511218694	4.41991143684558	4.47437758108613	4.00139492167387	4.82186998598296	4.39953605461243	4.57656744641255	0.219053230622648	0.635278306691312	0.845633612363053
Merged-chr6-24155086-1	chr6	24154986	24155186	+	680.0	f0_balb.idr	intron (NM_019481, intron 1 of 14)	B4A|SINE|B4	13006.0	NM_019481	55961.0	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	2.67928908364457	2.47389488060667	2.62200311677255	2.95512442879905	2.21248921853563	2.30972027381392	2.20495214102905	2.28650462440938	-3.18961056066634	0.000774410830905791	0.0109587113803081
Merged-chr14-51989790-4	chr14	51989700	51989900	+	885.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045728)	promoter-TSS (NR_045728)	-971.0	NR_045728	100502764.0	Mm.437219	NR_045728	ENSMUSG00000097633	Gm16617	-	predicted gene, 16617	ncRNA	4.46887238867585	4.34304067438672	4.16884112389961	4.37541686087668	3.94591856736812	4.24504884260051	4.41010364295314	4.30380506335842	-0.287148241215354	0.47653234514103	0.753071552469824
Merged-chr9-89066992-1	chr9	89066892	89067092	+	594.0	f0_balb.idr	Intergenic	Intergenic	25843.0	NM_001170884	666747.0	Mm.425592	NM_001170884	ENSMUSG00000079162	Trim43b	EG666747|Gm8269	tripartite motif-containing 43B	protein-coding	3.1931124053276	2.82346643945595	3.04478742323032	2.95377026883552	2.33821508351932	2.56187583147278	2.67362485062823	2.60963675928049	-2.61790407309079	0.00106902499120091	0.0141962928822181
Merged-chr16-10785631-4	chr16	10785524	10785724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271603)	promoter-TSS (NM_001271603)	-88.0	NM_001271603	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	7.27647324712755	7.32321445478584	6.84075679122991	7.1825796186672	7.45877913546441	7.54585348050767	7.09673329492406	7.28314349321747	0.252798007689708	0.219881751699168	0.527535673996415
Merged-chr7-101906279-2	chr7	101906179	101906379	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081679)	promoter-TSS (NM_001081679)	80.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	5.99402742413251	5.62610857722251	5.70349197179072	5.84498388670082	6.00529715356887	6.05798384988554	6.35106255345051	6.29718964002338	0.598263495737983	0.0168903385568466	0.11407509328568
Merged-chr15-78860707-4	chr15	78860621	78860821	+	866.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-5192.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	5.14915075533074	5.30099691507503	4.89106646166746	5.30962521500674	4.77251867136785	4.60422810579808	4.4015216352442	4.69457743067801	-1.1144781401028	0.00131352748893358	0.0167825476817095
Merged-chr3-75557466-4	chr3	75557360	75557560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019745)	promoter-TSS (NM_019745)	-33.0	NM_009250	20713.0	Mm.41560	NM_009250	ENSMUSG00000027834	Serpini1	AI837402|Ns|PI-12|PI12|Spi17	serine (or cysteine) peptidase inhibitor, clade I, member 1	protein-coding	7.3612597944914	7.36388193298584	7.30946048175718	7.52234112666219	7.71834910388843	7.59080106752469	7.86432841758564	7.52258962263272	0.374259246174803	0.0371858815474926	0.192345761897203
Merged-chr17-63402394-4	chr17	63402279	63402479	+	835.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 4 of 8)	L1MDa|LINE|L1	-89406.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	4.47964977667226	5.23259794570089	4.96149128823481	4.11724757250225	5.18525853724049	5.10113577920514	4.8687710037078	4.65805328127885	0.410308655490142	0.336449095279873	0.646448793467285
Merged-chr2-180255865-4	chr2	180255757	180255957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-1522.0	NM_025587	66481.0	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	5.13590144655284	5.32066668015038	5.06838234662745	5.4020258481397	5.19964825053627	5.1350539510541	5.35244348998301	5.29011032997151	-0.017259179882423	0.953775679414346	0.983547181850056
Merged-chr6-125252432-4	chr6	125252323	125252523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-13102.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	7.12102079366517	6.76759778191619	7.29195027511439	7.34436273110503	6.94558073586759	6.58755995704926	7.01658602412917	6.98565592647291	-0.355821115165723	0.110692252521302	0.367488985177879
Merged-chr10-125725599-4	chr10	125725503	125725703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-240616.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	6.49645679231836	6.40941202792903	6.86064558641931	7.05976675230867	6.40411148253184	6.37335508128002	6.63634431538329	6.07860672805251	-0.519044519361385	0.0431433948517903	0.211349188035484
Merged-chr11-67608375-3	chr11	67608341	67608541	+	692.761108	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109657, intron 2 of 13)	intron (NM_001109657, intron 2 of 13)	11886.0	NM_001277079	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	3.01675118973846	2.94101869763823	3.22917764160093	3.20892279231605	3.78164333020108	3.53108512294476	3.55885673233608	3.9223811948193	2.04332894738614	0.00034323221408025	0.00566185996894973
Merged-chr1-135269344-4	chr1	135269238	135269438	+	705.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 4 of 9)	PB1D10|SINE|Alu	-10866.0	NM_007921	13710.0	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	3.98179832575781	4.17823213157674	4.12507392610453	4.04509588925042	4.25832141058387	4.15483027873983	3.9659374274679	3.81998270434694	-0.0364652272180301	0.931680291101162	0.975351667244339
Merged-chr15-81586089-4	chr15	81585998	81586198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177821)	promoter-TSS (NM_177821)	-116.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	5.5082259139824	5.32854332284783	5.56309303866219	5.43820623470607	5.74173812308277	5.37752178515429	5.48156565795585	5.70816507912986	0.236921301686578	0.388664246426941	0.689050386119166
Merged-chr13-14039600-4	chr13	14039499	14039699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_130788)	promoter-TSS (NR_130788)	39.0	NR_130788	70430.0	Mm.260209	NM_178337	ENSMUSG00000039233	Tbce	2610206D02Rik|C530005D02Rik|pmn	tubulin-specific chaperone E	protein-coding	6.9373468547211	6.81094075145261	7.52596310202768	7.15887325028495	6.68595155710048	7.00611549638093	6.86346771852569	7.05870316852071	-0.31933049690562	0.167071510248787	0.4585269855325
Merged-chr19-32200228-3	chr19	32200111	32200311	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	10802.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	5.02844966982737	5.40915581452039	4.93541159562894	5.41925770406553	3.90083945622539	4.17212808957697	4.14258029503952	4.15756751163076	-2.6492505105881	8.63104725405029e-11	6.67045941906673e-09
Merged-chr5-139479248-4	chr5	139479176	139479376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133349, intron 3 of 6)	intron (NM_133349, intron 3 of 6)	5215.0	NM_133349	100494.0	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	6.0335422565426	6.48019098159165	6.01399114769096	6.28342086587006	5.60969009571568	5.59639847879712	5.05238092492477	5.87836924347435	-1.05371530846012	0.000361782893433577	0.00591169526439592
Merged-chr4-43493413-4	chr4	43493312	43493512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_001460)	promoter-TSS (NR_001460)	47.0	NM_001037913	622404.0	Mm.289109	NM_001037913	ENSMUSG00000028461	Ccdc107	-	coiled-coil domain containing 107	protein-coding	6.55506468448861	6.28661322355665	6.39945021397807	5.88879438739513	6.06754757778493	6.21054601670598	5.95742601893174	6.27215599734654	-0.240950280326948	0.356621465463903	0.663014760197382
Merged-chr11-21091831-4	chr11	21091730	21091930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023324, intron 1 of 6)	CpG	506.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	5.28806413097065	5.61972575423591	5.12700007115499	5.07916461607252	5.64894712224518	5.36975039362252	5.29253638428563	4.89820722102251	0.0888405706960839	0.791123348071568	0.918949195345575
Merged-chr10-12699134-3	chr10	12699031	12699231	+	744.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 22 of 73)	intron (NM_011682, intron 22 of 73)	162604.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	2.71184119783058	2.90948936551541	2.71204823518883	3.04956956358297	3.16687142853035	3.46751061874493	3.47698016584252	3.29688110330791	1.93168033174768	0.00455983599889704	0.0443515395689385
Merged-chr18-73816608-4	chr18	73816506	73816706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1214.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	7.44076226685391	7.2908075998547	7.54426313981637	8.01995406553561	7.48790708094233	7.07126153436508	7.60128007098453	7.4655900497219	-0.255627476620521	0.265352555245259	0.577001515467012
Merged-chr9-13545901-4	chr9	13545793	13545993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74096.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	6.79137678077322	6.89219564215867	7.12279977256475	7.18113000743975	6.68548146868309	6.52080272997365	6.65615153923421	6.47196727472295	-0.604546484369716	0.00429670710123871	0.0424005704643103
Merged-chr12-3894720-4	chr12	3894604	3894804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 1 of 17)	intron (NM_153743, intron 1 of 17)	2960.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	7.04990766646763	6.75210985279319	7.22215730719171	7.55137242140138	6.40608093639716	6.19082104542421	6.48296606206927	6.43974958133694	-1.13761014384561	3.38739843480826e-06	0.00010474006654701
Merged-chr1-151616722-4	chr1	151616643	151616843	+	935.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	RMER19B|LTR|ERVK	45370.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	4.75213009104813	4.50826733928534	4.25946633245027	4.35797889353473	4.56849082642661	4.74128036160902	4.62421300308038	4.30599855767421	0.209813735108476	0.579779709729999	0.815474743074892
Merged-chr3-135731474-4	chr3	135731355	135731555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39908.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	6.12347737298817	6.24619417870415	5.86302771213909	6.44954970873039	6.73708853648926	6.5701800692179	6.47737262320781	6.22333164059635	0.467557850645134	0.0654099727797997	0.272266249099056
Merged-chr7-7298730-4	chr7	7298603	7298803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_049193)	promoter-TSS (NR_049193)	133.0	NM_001302386	12727.0	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2|clC-4	chloride channel, voltage-sensitive 4	protein-coding	8.56596739512032	8.54042957958065	9.0866121997808	8.34078385870796	8.25870360563966	8.57680416894986	8.15924711980726	8.25918772756877	-0.426845498194945	0.0377129109892354	0.194150180483882
Merged-chr4-62308585-4	chr4	62308492	62308692	+	893.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 21 of 27)	B4A|SINE|B4	17045.0	NM_001290518	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	4.63748145483234	4.12725517988822	4.87510631946282	4.93470628656627	4.27638739445164	4.27305494973084	4.57866008650147	4.29641097977079	-0.737653385200442	0.0766478507366438	0.299238556800327
Merged-chr2-124611415-4	chr2	124611316	124611516	+	927.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	1120.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.28852290549209	4.55098931218939	4.50954161152052	4.39227070853813	4.49112242588353	4.55557079851152	4.67479257713128	4.3791438784735	0.206858114494423	0.570149642832783	0.809888072545743
Merged-chr2-44274722-4	chr2	44274640	44274840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 12 of 14)	intron (NM_001301831, intron 12 of 14)	-209416.0	NR_040622	320872.0	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	7.30121422901861	6.97427937735377	7.77842321189236	7.63563663546473	7.38970989774976	7.05973477475903	7.56351776455918	7.04131678314982	-0.235295977639089	0.328819054271826	0.640144325858488
Merged-chr2-6330848-4	chr2	6330765	6330965	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080548, intron 1 of 14)	intron (NM_001080548, intron 1 of 14)	8108.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	5.27313550827198	5.00344497624622	5.21306329820277	5.84895149763161	5.13504318181981	4.90833695025736	5.21789467295069	4.96996315751728	-0.610404034841589	0.0821089520709016	0.311105775548531
Merged-chr1-64970907-1	chr1	64970807	64971007	+	718.0	f0_balb.idr	Intergenic	Intergenic	-14083.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	3.6560888382898	3.81061285364421	3.89721921134452	3.61950182134997	3.57824491884761	3.33436340168104	3.69316721966533	3.70636715269374	-0.490639330588465	0.318028221729914	0.629923497175911
Merged-chr6-29279181-4	chr6	29279093	29279293	+	952.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1948.0	NM_001101486	245884.0	Mm.33683	NM_001101486	ENSMUSG00000079652	Fam71f2	AI507611|GARI	family with sequence similarity 71, member F2	protein-coding	4.61744872801047	4.81123194289839	4.20668391775415	4.60750820559298	4.68601623394703	4.53571311528389	4.67196699214719	4.65371160928377	0.122590884268051	0.738450677415762	0.896751301187029
Merged-chr1-186508582-3	chr1	186508477	186508677	+	814.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50104.0	NR_131124	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	4.00429079691564	3.93763700382046	4.63509473130509	4.41160304860513	3.78091220518977	3.9651594268217	3.98808389594657	4.10052420384005	-0.843531122156667	0.065098140553718	0.271503994924383
Merged-chr8-95099172-3	chr8	95099067	95099267	+	880.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001145831)	TTS (NM_001145831)	14175.0	NM_001145832	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	3.23026671815331	3.32076218485412	3.45358329899735	3.39604055337357	3.11875293481834	3.5158646086847	3.15787546739381	3.2883934616295	-0.29797731986895	0.582477363448296	0.816585973503037
Merged-chr16-36936981-2	chr16	36936881	36937081	+	862.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_008225, intron 1 of 13)	intron (NM_008225, intron 1 of 13)	1998.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	3.35525949850595	3.07834457594824	3.19579710652204	2.70053658185143	3.39093364399033	2.83223723467755	3.18301976750487	3.13604504475648	0.200089784754721	0.758077367673793	0.904926340425875
Merged-chr10-80340374-4	chr10	80340271	80340471	+	940.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104339, exon 12 of 12)	non-coding (NR_104339, exon 12 of 12)	8077.0	NM_001285435	66548.0	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	4.7625778314923	4.83520737053408	5.073522868747	4.3139538305459	4.54802313098094	4.53041256002032	4.46878904272237	4.19505351807834	-0.695279349185013	0.0864630582223742	0.320676989169612
Merged-chr4-8939172-4	chr4	8939083	8939283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187859.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	5.34354910214578	5.57982220128769	5.55776285009377	5.94384547397419	5.74446545913729	5.84029959832445	5.52988842497192	6.01798541601346	0.239599448072569	0.412194534778374	0.707394257928814
Merged-chr15-61541028-4	chr15	61540914	61541114	+	883.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	233437.0	NR_040350	432956.0	Mm.404918	NR_040350	ENSMUSG00000116031	D030024E09Rik	-	RIKEN cDNA D030024E09 gene	ncRNA	4.5053363845374	4.47243214880347	4.3861397464493	4.67080153354681	4.14539162766565	4.17783624621686	4.08942296746218	4.29672893085685	-0.839767950531541	0.0305089268297632	0.169074657646817
Merged-chr15-38661065-4	chr15	38660960	38661160	+	892.912476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025494)	promoter-TSS (NM_025494)	-844.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	4.14907353574166	4.41871000003944	4.0491470361716	4.3108724883779	4.04263911897048	4.32334620909977	4.31030277535378	4.40848837430415	0.0556113081873095	0.890663591964693	0.959104227034594
Merged-chr15-64222817-4	chr15	64222714	64222914	+	885.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	89859.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	3.87970768496916	3.97250318099658	4.22665655464293	4.30066635763012	4.36886246235894	4.11175128009557	4.24996474444894	4.13428436442989	0.267143858197727	0.525815187960383	0.783367294725902
Merged-chr12-91008398-4	chr12	91008293	91008493	+	972.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181815, intron 25 of 25)	intron (NM_181815, intron 25 of 25)	-37455.0	NR_045858	71349.0	Mm.442093	NR_045858	ENSMUSG00000085004	5430427M07Rik	-	RIKEN cDNA 5430427M07 gene	ncRNA	5.51407615520268	5.30692084321493	6.00316782243601	5.93828041628781	5.32328277240742	5.08580186587226	5.31424928602196	5.27337191037607	-0.8249910974347	0.00817883515802949	0.0681729642732607
Merged-chr19-5727876-6	chr19	5727833	5728033	+	967.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_181452)	TTS (NM_181452)	-1616.0	NM_053252	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	4.83545498471561	5.04849223934671	4.39766428496505	4.28511533426783	5.08904775158307	5.33377111348527	4.91923047091839	4.94011770161161	0.822828346295362	0.0296742151151697	0.166038908708644
Merged-chr11-116807659-1	chr11	116807559	116807759	+	794.666687	f0_balb.idr	3' UTR (NM_001347633, exon 5 of 5)	3' UTR (NM_001347633, exon 5 of 5)	20387.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	3.78003568501279	3.61375633708081	3.45081522150998	3.68727649490464	3.08470038266272	3.19172686653342	3.26645036382088	2.92929993198471	-1.985674256416	0.000758888873162918	0.010790441690544
Merged-chr12-86242825-4	chr12	86242719	86242919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027405, intron 1 of 9)	intron (NM_027405, intron 1 of 9)	961.0	NM_001324488	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	6.33291149165854	6.63178005778893	5.96793790380869	5.93065726608392	6.36082061452921	6.21393288134825	5.96074581611282	6.31173027247755	-0.0259094232760376	0.923989362440906	0.971896610092346
Merged-chr2-119208601-1	chr2	119208501	119208701	+	1000.0	f0_c57.idr	promoter-TSS (NM_001164827)	promoter-TSS (NM_001164827)	-119.0	NM_001164827	72008.0	Mm.386807	NM_028054	ENSMUSG00000068580	Zfyve19	1500041L05Rik|ANCHR	zinc finger, FYVE domain containing 19	protein-coding	6.33305224059791	6.4647766925636	6.45477517077368	6.39160009281735	6.13221051649648	6.25133624916559	6.31963277209213	6.17607322579095	-0.292320538661999	0.179350958771381	0.475581041403277
Merged-chr9-62968545-4	chr9	62968449	62968649	+	595.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	Charlie1a|DNA|hAT-Charlie	12330.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	3.69550921301992	3.86178449082167	3.74943067585675	3.78801325678129	3.87394575749803	3.81354372919609	3.68182129041769	3.89529656885759	0.12789454164952	0.774109391545381	0.911716359199097
Merged-chr12-100204090-3	chr12	100203969	100204169	+	921.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313934, intron 3 of 5)	intron (NM_001313934, intron 3 of 5)	3925.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	4.23361692215678	4.05815269534829	4.3986849761836	4.80717403192183	3.90876618739405	4.06371978529427	3.86874183109282	3.9914723071249	-1.19688563582928	0.00811768802147496	0.0678737126372096
Merged-chr1-60609602-3	chr1	60609505	60609705	+	865.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42840.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	4.12334238950828	3.82775803243326	3.66704306072764	4.66205279285862	3.57883378959599	3.90485617384427	3.87375219786942	3.7811178852223	-0.979947963463016	0.061608775055527	0.262652791068361
Merged-chr6-34029450-4	chr6	34029392	34029592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028886)	promoter-TSS (NM_028886)	44.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	5.6625343254537	5.78157479384041	5.80692263908671	5.58802233672177	5.57750496596632	5.58961887421738	5.18762471938424	5.84710589228263	-0.226521809134228	0.422780589971297	0.714904276021855
Merged-chr3-53098337-3	chr3	53098232	53098432	+	947.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175386, intron 2 of 3)	intron (NM_175386, intron 2 of 3)	56785.0	NM_175386	108927.0	Mm.118617	NM_175386	ENSMUSG00000048332	Lhfp	2810489O06Rik|AI194968|Lhfpl6	lipoma HMGIC fusion partner	protein-coding	4.96514918582844	4.44862167412814	5.18668778753112	5.41593399375758	3.84702550437281	4.10439807009256	4.07761642859303	4.20419258596978	-2.35246838561131	1.1317380849036e-07	4.80644302776571e-06
Merged-chr9-58210174-4	chr9	58210087	58210287	+	870.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5868.0	NM_001161541	320563.0	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	4.56009353796961	4.32914464306711	4.48247796177163	4.69154720352529	4.40492966258766	4.23559300185907	4.33586715754163	4.43858675020036	-0.404078007296152	0.284533684383875	0.59632983697174
Merged-chr7-74554268-2	chr7	74554168	74554368	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038643, intron 1 of 10)	CpG	512.0	NM_023908	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	2.74840107942936	2.78282007762221	2.74868982756958	2.7055659161766	3.06804387846644	2.92150802503073	2.86698188054249	2.99254456826232	1.01075168897998	0.0906561852362118	0.328839454157281
Merged-chr4-43972356-4	chr4	43972262	43972462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 4 of 4)	intron (NM_027450, intron 4 of 4)	-11142.0	NM_001002787	442829.0	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	7.40000103523356	7.0773781733358	6.82895978019161	6.80764670727129	6.86109341250375	7.30146432433031	7.3083058621636	6.86686631854331	0.0747892859582938	0.749944825909092	0.901564247164595
Merged-chr2-131492816-3	chr2	131492732	131492932	+	685.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177840, intron 1 of 3)	intron (NM_001177840, intron 1 of 3)	970.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	3.41413508162066	3.23734650132146	3.3624787815627	3.30392255873181	3.04723516607001	3.10465984028496	3.34884194388756	3.24959515243631	-0.52740111503817	0.334952157624089	0.64529103101308
Merged-chr16-94240349-4	chr16	94240241	94240441	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	L1MB4|LINE|L1	49950.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	4.84576967487352	4.7020439088231	4.72768875474012	5.21728029476543	4.71920197133717	5.09375299692297	5.20857374697702	5.05215953396037	0.217536882412238	0.541292419775683	0.793195970055626
Merged-chr6-134047601-4	chr6	134047504	134047704	+	757.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	MTEb|LTR|ERVL-MaLR	11904.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	4.20812265349365	4.19683021792599	3.88960107576868	3.99313748144978	4.58327657133027	4.2376583155448	4.23617391169213	4.82809765388092	1.02012655979174	0.013544271402148	0.0977359787239959
Merged-chr17-5615127-4	chr17	5615020	5615220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	122520.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	5.44824551532036	5.48330840886426	5.53264020578268	5.82054940822613	5.56841298126729	5.3030533735055	5.47787226787752	5.44539048521787	-0.240607631602198	0.395246076992778	0.694150374158478
Merged-chr7-102513224-4	chr7	102513102	102513302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-18429.0	NM_146840	258837.0	Mm.377714	NM_146840	ENSMUSG00000044824	Olfr545	MOR42-1|S50	olfactory receptor 545	protein-coding	5.73936649510437	6.04833408312601	5.99948880730907	6.21803293274797	5.84379681648509	5.66106071789581	6.08980369277681	5.92969567806845	-0.21832782426324	0.401444384313993	0.699033926929219
Merged-chr13-37056911-4	chr13	37056799	37056999	+	934.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6655.0	NM_001166391	74145.0	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	5.47249830599282	5.23931983657492	5.16241959221862	5.68490377222587	4.87177052058575	4.84299397363448	5.07173203706034	4.91235630736281	-0.937346435375809	0.00354491411201781	0.0364050557754026
Merged-chr9-37041229-3	chr9	37041133	37041333	+	827.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 2 of 12)	L2c|LINE|L2	106089.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	3.05887535790957	3.05085061200607	3.64046154940695	3.7045100643306	2.59449274362663	2.65732452459131	2.62626024008245	2.71188849702115	-4.40394072314863	1.1475361179987e-05	0.000311638585818502
Merged-chr12-77781519-4	chr12	77781426	77781626	+	869.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	371385.0	NM_001252616	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	4.14558441489943	4.05665001604112	4.14621299314988	4.12702491087915	4.0587505962069	4.12648018812236	3.98747144068394	4.14367074005561	-0.105203183209738	0.794067257571164	0.9203411871535
Merged-chr16-91869127-3	chr16	91869018	91869218	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 27 of 28)	intron (NM_001110275, intron 27 of 28)	62512.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	4.74106824937447	4.8564996394968	4.54338875612385	4.76707030526152	4.78141575408612	4.67507994493261	4.60522948582838	4.4969661371413	-0.183901330272863	0.596326685541484	0.824641303041601
Merged-chr2-124707037-4	chr2	124706946	124707146	+	716.912476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53465.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.32548181936296	4.1070803502893	4.23593464586186	4.40999744478473	4.04887195254708	4.36320363480402	4.42977762602745	4.59619935518389	0.200403717149847	0.620994611943874	0.837616640748534
Merged-chr1-16651298-4	chr1	16651197	16651397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310470, intron 1 of 4)	intron (NM_001310470, intron 1 of 4)	5568.0	NM_026456	67923.0	Mm.289248	NM_026456	ENSMUSG00000079658	Eloc	2610043E24Rik|2610301I15Rik|AA407206|AI987979|AW049146|Tceb1	elongin C	protein-coding	5.60600441065539	5.73078666249684	5.27076568048917	5.67066623341627	5.98105350498613	5.72800269468145	5.88522349370819	5.57588429469073	0.362192357839542	0.188036952227876	0.486541939824349
Merged-chr2-18939066-3	chr2	18938971	18939171	+	900.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	59050.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	4.13516010095071	3.9581852568901	4.05064169553968	4.24412330615201	3.51981108046463	3.81773185714453	3.43357011876739	3.90869595273637	-1.25370605600776	0.00903287986216243	0.0733415428334287
Merged-chr6-82041645-1	chr6	82041545	82041745	+	852.0	f0_balb.idr	promoter-TSS (NM_145570)	promoter-TSS (NM_145570)	17.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	3.46048543205728	3.3593152488127	3.36166405924566	3.4498761947988	2.95578506910904	2.81276375407283	2.78095651455123	3.30698602464753	-1.755386287097	0.0070827503532031	0.0614284254161866
Merged-chr8-128680138-3	chr8	128679994	128680194	+	922.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5560.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	3.15944082975438	3.45525953710902	3.21886277706034	3.21973477804861	3.30472643042516	3.14159406256788	3.2626040756752	2.96374344840137	-0.332916590754704	0.55592074222734	0.801730133825154
Merged-chr1-64532850-4	chr1	64532743	64532943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009952)	promoter-TSS (NM_009952)	39.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	7.81251154626068	8.27536259354171	8.01737244509761	8.04272836787424	8.45055325277112	8.48013187495283	8.54853308054876	8.39272913723029	0.532211319144833	0.00139373554734337	0.0176082184104284
Merged-chr6-83711174-4	chr6	83711086	83711286	+	818.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011912)	promoter-TSS (NM_011912)	-78.0	NM_011912	24113.0	Mm.307165	NM_011912	ENSMUSG00000034777	Vax2	Dres93	ventral anterior homeobox 2	protein-coding	3.84702359801782	3.7749078376406	3.5880398286677	3.63293516281589	3.77874360245606	3.58316439191295	3.63018497429993	3.93570557298398	0.0965328883626367	0.836675981300868	0.937953980810766
Merged-chr9-110530814-4	chr9	110530708	110530908	+	799.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1789.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	4.15814590718084	3.94464238878424	3.98396741353445	4.04169698195139	3.82460444337668	3.51976640728738	3.87051571684455	4.02752507714153	-0.585324776113867	0.198042910391827	0.499521485428061
Merged-chr1-191172641-2	chr1	191172541	191172741	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007498, intron 2 of 3)	B3|SINE|B2	-7824.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	3.09421645828137	3.41626955607568	2.75795610558127	2.65473309099006	3.24760577973933	3.08083512819457	3.14017797170899	3.03216029623837	0.437818653445152	0.507043565094438	0.77270760099893
Merged-chr9-106421961-4	chr9	106421858	106422058	+	959.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7453.0	NM_001324533	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	4.70742006527906	4.75291543213486	4.85140120275492	4.65934757446717	4.7139313609624	4.76296037027582	4.52632891318527	4.54392450458497	-0.202044145005603	0.555610533716451	0.801591959543503
Merged-chr17-69144544-4	chr17	69144471	69144671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	-12173.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	5.37748859050508	5.6851288253648	6.38887530061892	6.58019957879563	5.53889684260339	4.96215506577976	5.66738550170766	5.46935909559662	-1.09570318923258	0.00312554034445291	0.0329882615922025
Merged-chr4-132838270-4	chr4	132838151	132838351	+	863.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355198, intron 2 of 6)	intron (NM_001355198, intron 2 of 6)	4883.0	NM_001355198	100336.0	Mm.105230	NM_146154	ENSMUSG00000028882	Ppp1r8	6330548N22Rik|AU044684|NIPP1	protein phosphatase 1, regulatory (inhibitor) subunit 8	protein-coding	4.53514781639354	4.03764192727278	4.42233330664753	4.52406595387206	4.17783490671645	3.88850562294569	3.98845507934335	4.56845784916815	-0.516853597831888	0.243976029454074	0.555018370689748
Merged-chr9-21286725-6	chr9	21286626	21286826	+	689.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145416, intron 2 of 18)	intron (NM_145416, intron 2 of 18)	1243.0	NM_145416	215194.0	Mm.290690	NM_145416	ENSMUSG00000035047	Kri1	-	KRI1 homolog	protein-coding	3.2012912971212	3.29250705617417	3.26100579524087	3.11877534099601	3.45107445492031	3.18407626187262	3.19040252724942	3.47203567548141	0.450318667788407	0.400021455484372	0.698016583884129
Merged-chr17-81750269-4	chr17	81750157	81750357	+	854.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11870.0	NM_011406	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	3.98818375889337	3.64144940052658	3.60137058049752	3.84958634079765	3.5741831510489	4.20770963709507	4.22786503299516	4.32128775795591	0.884637918146454	0.0715954545839326	0.287330450035506
Merged-chr3-118044453-3	chr3	118044356	118044556	+	956.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175520.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	4.19584403454515	3.85705613332115	4.3553986356619	4.24685330602872	3.77821959675153	4.08802718820105	3.788454709586	4.01222406562389	-0.700541098528535	0.11451582798246	0.374333966473639
Merged-chr16-5471323-3	chr16	5471215	5471415	+	928.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-215359.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	4.06888749165693	3.6614587314849	3.76625910265063	3.7262662985778	3.58486300943799	3.5477661747013	3.59589334701349	3.43072405765737	-0.834731006434819	0.0887038086509564	0.325080243917219
Merged-chr2-6695612-4	chr2	6695508	6695708	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	26054.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	4.93274361135034	4.90861511979749	5.23350410922409	5.42464864048586	5.13081725655567	4.91088960157081	5.23664300311986	5.13765821291743	-0.0945840061237832	0.773086392871392	0.911199828859751
Merged-chr17-34103049-4	chr17	34102962	34103162	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-7753.0	NR_046183	414076.0	Mm.473092	NR_046183	ENSMUSG00000098197	BC051537	-	cDNA sequence BC051537	ncRNA	4.71002357670772	4.56840396217683	4.32105811490105	4.08947767780889	5.03110243312761	4.91981017342434	4.86097777442112	4.50584360902192	0.908988061114072	0.0183494338210777	0.120916493960507
Merged-chr13-112871761-4	chr13	112871647	112871847	+	934.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028151, intron 25 of 26)	intron (NM_028151, intron 25 of 26)	55633.0	NM_028151	72198.0	Mm.291029	NM_028151	ENSMUSG00000016018	Skiv2l2	2610528A15Rik|Mtrex|mKIAA0052	superkiller viralicidic activity 2-like 2 (S. cerevisiae)	protein-coding	5.13725239824079	4.5652360334689	5.00265942481389	5.36937480559234	5.23112870032132	5.43246402443689	5.31811265264671	4.8073782642383	0.282871830984785	0.43580130916811	0.724848729647783
Merged-chr7-5083975-3	chr7	5083867	5084067	+	920.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001252454, exon 2 of 11)	exon (NM_001252454, exon 2 of 11)	3732.0	NM_001252454	13854.0	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	3.89908780144954	3.5448870817074	4.30952187456576	4.49296732767046	3.59584021604173	3.96839180839628	3.98534697408061	4.38205181794828	-0.27253161917681	0.61232261305492	0.832715671052909
Merged-chr9-77825881-4	chr9	77825759	77825959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71324.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	5.30769512360287	5.3008210634264	5.36917989676887	5.86398679575841	5.18655459370391	5.17451963974788	5.39984453276061	5.5820938144305	-0.287348947763619	0.367449721936623	0.671879929346449
Merged-chr6-33969414-4	chr6	33969319	33969519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 17 of 17)	intron (NM_009148, intron 17 of 17)	-60029.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	5.99763294691439	6.17127979081855	6.72055538548681	6.64125982994582	6.42894833764279	6.20224631175803	6.81587977767674	6.49089230584969	0.113159792685002	0.675687760699179	0.866900613183491
Merged-chr10-77353581-2	chr10	77353481	77353681	+	846.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024838, intron 2 of 11)	intron (NM_001024838, intron 2 of 11)	64692.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	2.7052676879145	2.91060784449838	2.6321945748703	2.86885598366339	2.85100156673152	2.94899053903168	3.00957892679871	3.17763510954869	0.905160083308038	0.150259414363893	0.432862361299688
Merged-chr8-121111343-4	chr8	121111257	121111457	+	982.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-2978.0	NM_001166482	234814.0	Mm.31690	NM_172761	ENSMUSG00000031816	Mthfsd	AW049977|BC052066|C920004D05	methenyltetrahydrofolate synthetase domain containing	protein-coding	4.6792621438123	4.68238949596839	4.50817745488009	4.95029923701249	4.98970496109832	4.64030561093673	5.03449132751697	4.75492717989113	0.281822617911321	0.426917973679126	0.718230032581873
Merged-chr1-71798787-4	chr1	71798665	71798865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-89347.0	NR_027659	667931.0	Mm.214128	NR_027658	ENSMUSG00000099707	Gm8883	EG667931|Gm554	predicted gene 8883	ncRNA	5.30455021945773	5.38959040529777	5.27391942002906	4.89146619495837	5.44610051227854	5.48125726318195	5.62798399441317	5.72159909946941	0.643308568130432	0.0308030152963984	0.170214100285874
Merged-chr12-33302252-4	chr12	33302162	33302362	+	985.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033436)	promoter-TSS (NM_001033436)	-253.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	5.49995711893992	5.38366826665297	4.66890956175859	5.22025886072791	5.72924359837441	5.37922861822577	5.91440143022137	5.23112099028631	0.640493145180314	0.0627060170434436	0.265328236067963
Merged-chr4-105157473-5	chr4	105157331	105157531	+	891.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080555)	promoter-TSS (NM_080555)	84.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.38374258949591	3.86224072732837	4.16272551932492	4.46390975968745	4.39815027862601	4.18691332211588	4.51569823395725	4.20768473419344	0.208934875485445	0.622254610324097	0.838289012366954
Merged-chr14-122557545-4	chr14	122557482	122557682	+	844.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144844, intron 1 of 23)	intron (NM_144844, intron 1 of 23)	23254.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	4.22184317152788	4.5164070046095	4.22246210676749	4.63095655488371	4.59754149908491	4.24790047863384	4.33956141205068	4.17112563824701	-0.154047736221613	0.705181840181212	0.881588769886513
Merged-chr16-33056478-4	chr16	33056371	33056571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021338)	promoter-TSS (NM_021338)	-11.0	NM_001130484	57808.0	Mm.19355	NM_021338	ENSMUSG00000060636	Rpl35a	2810431L15Rik|Rpl35	ribosomal protein L35A	protein-coding	5.44398360129006	5.58220227110127	5.0777155571289	5.07494538036215	5.92331653256815	5.85620987500525	5.19783538758013	5.85776673841461	0.749253476507511	0.0186964007579342	0.122394105541157
Merged-chr18-32377765-3	chr18	32377678	32377878	+	863.2698359999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045403, exon 1 of 3)	non-coding (NR_045403, exon 1 of 3)	506.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	3.3364412571471	3.42226915229549	3.69885665320556	3.42755358182285	3.574868831832	3.25386052734694	3.20262694378121	3.69658931859573	-0.0748187426092107	0.890150838764956	0.958852987370432
Merged-chr13-37347984-4	chr13	37347882	37348082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	2637.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.94234123601703	5.40234128684248	5.71751469414628	5.74607445697162	5.72317622599538	5.67890453351287	5.68855762097467	5.68849437321286	-0.0297607258868125	0.911118657637678	0.966904162861598
Merged-chr7-109519621-1	chr7	109519521	109519721	+	1000.0	f0_balb.idr	promoter-TSS (NR_028079)	promoter-TSS (NR_028079)	426.0	NM_011975	26451.0	Mm.305750	NM_011975	ENSMUSG00000046364	Rpl27a	L27'|L27A|L29	ribosomal protein L27A	protein-coding	5.56029206282552	6.14251673244703	6.03187077729079	5.37699027946457	6.03931786505541	6.05385846021622	5.93762549631076	6.18288013915169	0.401035658099096	0.165921627507569	0.456871780439507
Merged-chr9-92207541-4	chr9	92207451	92207651	+	880.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195693, intron 5 of 6)	intron (NM_001195693, intron 5 of 6)	14615.0	NM_001195693	100504689.0	Mm.464262	NM_001195693	ENSMUSG00000095654	Plscr5	331000	phospholipid scramblase family, member 5	protein-coding	3.86200590020172	3.99768903324803	4.2123752051796	4.19017513404279	3.89034838127261	4.38261852738427	4.35565617870802	4.16522898563315	0.315846654015736	0.464494079733295	0.745464276626538
Merged-chr5-125179281-4	chr5	125179170	125179370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253904)	promoter-TSS (NM_001253904)	-56.0	NM_001253904	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	6.92125382145523	6.68125193215352	6.58366373609095	6.76703647058107	6.92464869459568	7.16137830854645	6.98624422964008	6.8782439068418	0.340889127979132	0.0894999805133815	0.326643035069578
Merged-chr16-8666657-4	chr16	8666524	8666724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025821, intron 1 of 3)	intron (NM_025821, intron 1 of 3)	5529.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	6.35768781067591	6.68178596928953	6.20742507249719	6.38243103101175	6.414169180514	6.11890253123125	6.19553835500131	6.318116481444	-0.219515967472724	0.348811096411828	0.656478715798452
Merged-chr6-113661220-4	chr6	113661105	113661305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	22738.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	5.39006003749436	5.49031531273351	5.57831799984516	5.48873909967742	5.47990051434306	5.16717039399817	5.36414432630983	5.09714074342017	-0.337487422293247	0.241259376905566	0.551836536802638
Merged-chr1-162477975-4	chr1	162477875	162478075	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172646)	promoter-TSS (NM_172646)	59.0	NM_172646	103967.0	Mm.441620	NM_172646	ENSMUSG00000040265	Dnm3	9630020E24Rik|AW061159|B230343F03Rik|C530045C17|Dyna III|mKIAA0820	dynamin 3	protein-coding	4.69319138875817	4.59703047940751	5.42022803201493	5.32295058837373	4.37235019705162	4.39628874145502	4.85974497290655	4.80780485723762	-0.898613560558068	0.0278737377292469	0.159612204923806
Merged-chr11-75153383-4	chr11	75153273	75153473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 15 of 18)	intron (NM_001002764, intron 15 of 18)	14779.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	6.26213438137901	6.55459712085007	5.94173324422512	6.27256493674924	6.26454633832054	6.27871346347692	6.24987836630577	6.34993421621944	0.00679851952822908	0.9771913266906	0.991888117862217
Merged-chr8-79389506-3	chr8	79389392	79389592	+	706.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	9976.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	3.71077001940416	3.2913052148029	3.4628667370934	3.50117225318851	3.47905759343115	3.73390090637506	3.33598564969143	3.22141219746881	-0.142659887462297	0.789151243047925	0.91835324030065
Merged-chr3-138012580-4	chr3	138012484	138012684	+	805.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-31035.0	NM_011932	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	4.21128871228117	4.2363654498326	4.2119227954238	4.12422181176886	4.20623811259079	4.63423930702702	4.23905134646133	4.34245875812328	0.408204742413244	0.297021078137013	0.609078672729295
Merged-chr3-142470212-4	chr3	142470096	142470296	+	971.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26738.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	5.16768155371324	5.98744852149052	5.23306982644691	4.85125933892835	5.27327868043049	5.37708912534626	5.14300920743516	4.86952316313334	-0.363812256697615	0.341119569544512	0.650255753631731
Merged-chr17-23749007-7	chr17	23748963	23749163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015472)	promoter-TSS (NR_015472)	-173.0	NR_015472	638247.0	Mm.382600	NR_015472	ENSMUSG00000097006	9530082P21Rik	E030034P13Rik	RIKEN cDNA 9530082P21 gene	ncRNA	5.9383714187119	5.73069336777526	5.56826505675287	5.56593817790656	5.44271159215356	5.63171256333659	5.1336346800769	5.71655676886507	-0.34994525985512	0.228253234832497	0.537085520731977
Merged-chr18-37928040-4	chr18	37927931	37928131	+	884.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305981, intron 1 of 28)	MIR3|SINE|MIR	7445.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	4.68926892397864	4.76149302755981	4.69001921196576	4.67261925696257	4.70670562367742	5.25439579990479	4.96316947809462	5.27828180878246	0.717462816618622	0.0356684768621101	0.187538776525962
Merged-chr11-68431850-4	chr11	68431831	68432031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177320)	promoter-TSS (NM_177320)	-194.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	6.27938504485543	6.27656131259381	6.45255678359328	5.75061554642323	6.22059454882709	6.5779727930638	5.983854655151	6.18029315163536	0.085919013698816	0.754532058908988	0.903334299140224
Merged-chr3-60474009-2	chr3	60473909	60474109	+	761.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253713, intron 2 of 9)	intron (NM_001253713, intron 2 of 9)	1179.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	2.64280592603858	2.6945051813854	2.71494124291197	2.49419012376052	2.76069621759224	3.08217368870561	3.06638323004227	3.07826050292782	1.72918951502233	0.00625078718071778	0.0559302049951365
Merged-chr10-121316560-4	chr10	121316468	121316668	+	925.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361015, intron 2 of 12)	intron (NM_001361015, intron 2 of 12)	-5172.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	4.76672812081219	5.24287277786344	4.94853138624265	4.82675856220687	4.81871134721792	5.11869320330605	4.49562530862386	4.72513537511687	-0.309512332914401	0.387784857411245	0.688635176216235
Merged-chr2-180119228-4	chr2	180119127	180119327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144500)	promoter-TSS (NM_144500)	-139.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	9.41745858718644	9.54773691351485	9.67817875102622	9.71459387658039	9.43548058891236	9.59388552091821	9.64848874952978	9.45854752957337	-0.0751949283141168	0.606418249397294	0.829368409964156
Merged-chr9-65032991-2	chr9	65032891	65033091	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028906, intron 1 of 20)	CpG	533.0	NM_028906	74388.0	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	4.8096499504891	4.46805591195195	4.67432328557237	4.44096496082304	4.37317088494999	4.42934994035182	4.37405922361518	4.43484846750733	-0.440435255375213	0.235992718549208	0.545965668203401
Merged-chr4-101419456-3	chr4	101419266	101419466	+	783.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177602)	promoter-TSS (NM_001177602)	45.0	NM_001177604	11639.0	Mm.42040	NM_009647	ENSMUSG00000028527	Ak4	AK 4|Ak-3|Ak-4|Ak3|Ak3l1|D4Ertd274e	adenylate kinase 4	protein-coding	2.79933886666624	2.80901949934923	2.91949588390905	2.4792408215341	2.60195139651651	2.6278514229738	2.78938538066395	3.02716355843658	0.0715639672517752	0.916053575616046	0.968912323381988
Merged-chr2-166773804-2	chr2	166773704	166773904	+	973.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19963.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	3.14586532431083	3.03510320821199	3.55241440050713	2.83178443831838	3.11886423086661	2.91842370544591	2.94439594647317	3.41290232853729	-0.193766170508402	0.762376074020052	0.906928612037859
Merged-chr14-19976719-4	chr14	19976604	19976804	+	961.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285911)	promoter-TSS (NM_001285911)	-11.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	5.2483871206967	5.00451695160874	4.79357966976911	4.60363167762802	4.82350611898079	5.04404837180423	4.73166317373756	5.10122521645398	0.0196284863267027	0.95579244848571	0.984292813605202
Merged-chr13-90886893-4	chr13	90886799	90886999	+	824.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145879, intron 5 of 6)	intron (NM_001145879, intron 5 of 6)	18456.0	NM_001145879	435376.0	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding	3.62639027837254	3.68846615981749	3.44668070973814	3.59805105997772	4.07597352301292	3.85479798184999	3.82120977535359	4.09420199441786	1.11894636364519	0.0141453786578299	0.100685390748567
Merged-chr13-25020337-4	chr13	25020245	25020445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013389)	promoter-TSS (NM_001013389)	-28.0	NM_001013389	380836.0	Mm.387097	NM_001013389	ENSMUSG00000021339	Mrs2	Gm902|HPT|Mrs2l|RPT	MRS2 magnesium transporter	protein-coding	7.48147413471378	7.29612244213943	6.94738727518307	7.60352139632124	7.13608100752756	7.30592604494322	7.53306809601558	7.28155300861642	-0.0636820425145445	0.767537343397618	0.909027746453384
Merged-chr5-21387582-4	chr5	21387484	21387684	+	879.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	14911.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	4.07683055892123	3.99645838337071	3.82110372895741	4.2881253672475	4.19502039926054	3.99726124502849	4.10504125391928	4.02770403179214	0.0377954734649285	0.930280863541345	0.974837964654887
Merged-chr7-144938257-4	chr7	144938168	144938368	+	870.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007631, intron 1 of 4)	intron (NM_007631, intron 1 of 4)	1657.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	4.01665520053109	3.44330362700807	3.67786925250467	3.61475641571371	3.95319261223411	3.6796886972416	3.99875809538087	3.78215998422484	0.48683765666157	0.309337531481452	0.621622697166796
Merged-chr15-74709395-4	chr15	74709271	74709471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008415)	promoter-TSS (NM_008415)	-49.0	NM_008415	16469.0	Mm.87052	NM_008415	ENSMUSG00000046380	Jrk	-	jerky	protein-coding	5.46411756158793	5.54708072979575	6.20377751600352	5.78693828591116	5.18275497912279	5.61256282332626	5.43769210208325	5.67796559810554	-0.50564553961818	0.102799882108461	0.35216269069915
Merged-chr2-169926721-2	chr2	169926621	169926821	+	637.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36466.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	3.48363799787999	3.3637726496865	3.7464592750584	3.3940234076822	3.73446945915272	3.4771234518092	3.52717869540918	3.87867952122034	0.541938706325951	0.278340268585331	0.590534970984105
Merged-chr1-184537039-2	chr1	184536939	184537139	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040472, intron 2 of 5)	PB1D9|SINE|Alu	20652.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	3.80609020079935	3.519140629555	3.70789219399807	3.47372975843682	3.48378855592643	3.66140860461469	3.69241294194218	3.93913753045183	0.235997373069644	0.629065131885886	0.841943270702596
Merged-chr15-86194852-2	chr15	86194752	86194952	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-8711.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	2.59402157579086	2.67428736798351	2.78462568122106	2.04413488556151	2.42215307542512	2.77197870695353	2.65059857882441	2.72262003084481	0.399564149033384	0.64106434192949	0.848590400530615
Merged-chr2-122777052-4	chr2	122776953	122777153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027888, intron 1 of 9)	intron (NR_027888, intron 1 of 9)	-4946.0	NM_021507	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	5.49736397646997	5.42212881890079	6.02168905391248	6.16128066370201	5.29700087620277	5.61625920223293	5.80324631806826	5.71049857551506	-0.357626253751916	0.257616439953121	0.569440392056059
Merged-chr14-20842810-4	chr14	20842705	20842905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008873, exon 11 of 11)	3' UTR (NM_008873, exon 11 of 11)	6143.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	6.2443949036448	6.46996244732973	5.9380182427094	6.12515763195581	6.55105889285874	6.55056964235798	6.39394698706571	6.37058805730205	0.393853370019736	0.090470094866901	0.328566298409671
Merged-chr13-43478717-3	chr13	43478635	43478835	+	964.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019930, intron 1 of 13)	intron (NM_019930, intron 1 of 13)	2238.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	3.65797171768063	3.77469908349332	3.36392664959452	3.9466752957908	3.58037261054427	3.66436272540674	3.47734496452913	3.85130198842485	-0.206716017989208	0.68626851367134	0.871787672169905
Merged-chr12-3737187-3	chr12	3737105	3737305	+	832.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-69775.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	3.80739120725	3.66845430975045	3.69875700593678	3.66771314273918	4.10542968448562	4.21164961970868	3.84359883791275	4.04489958785192	1.00338420860349	0.0209682798474178	0.13222016223063
Merged-chr18-69586213-4	chr18	69586113	69586313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	240053.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	6.06608140470968	5.43136453718287	5.52623712509747	6.17979769367216	5.91620188052159	5.97700004732863	6.18574601057009	5.93674378407462	0.234420401540276	0.426677458129813	0.71810486026063
Merged-chr1-33768958-2	chr1	33768858	33769058	+	720.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359274, intron 12 of 13)	intron (NM_001359274, intron 12 of 13)	-11208.0	NM_145392	213539.0	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	3.01887877059388	3.04475013991245	3.20491357848239	3.32507757200441	3.2346231759119	3.19319416933706	3.19305575880305	3.36518553769761	0.30940077788631	0.579481552756631	0.815384290230806
Merged-chr6-26205724-4	chr6	26205633	26205833	+	941.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	274307.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	4.86019740586714	4.6493086899406	5.25935253225293	5.48643804852622	5.02213520301866	4.73940001577628	5.11456381452913	5.2556666404125	-0.142827318741336	0.700367453611104	0.879134605729927
Merged-chr11-101442257-4	chr11	101442171	101442371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011289)	promoter-TSS (NM_011289)	26.0	NM_011289	19942.0	Mm.340658	NM_011289	ENSMUSG00000063316	Rpl27	-	ribosomal protein L27	protein-coding	8.42736310142209	8.6272804637614	8.14427610640339	8.15175652765324	8.61804403411631	8.90141665804416	8.4452863161235	8.60630841968333	0.378922912498313	0.0423412590025007	0.208813712336678
Merged-chr10-34118647-4	chr10	34118540	34118740	+	766.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9332.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	3.88990767053529	3.99672969517674	3.89044171011082	4.13736564315297	4.09412919810351	4.06247080451933	4.06557232671359	3.88828196343846	0.097204139764873	0.819401198057346	0.930843810041761
Merged-chr11-76623477-4	chr11	76623400	76623600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-45761.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	6.01197927492994	5.43829147511712	5.92606228785506	5.6915437264807	6.23118404371678	6.20821643083664	5.91795020478721	5.94412453111417	0.498528424899088	0.0601954975254791	0.259048084544503
Merged-chr4-95053973-4	chr4	95053840	95054040	+	983.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1718.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	4.88563748137912	4.92085471997793	4.88643581262556	5.01108872824535	5.86093709868237	5.52835000487277	5.92938199369846	5.85995265510831	1.52530278078579	1.18808889883923e-07	5.02776336090832e-06
Merged-chr6-90716487-4	chr6	90716392	90716592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134383)	promoter-TSS (NM_001134383)	37.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	6.61762937691898	6.78907591379919	7.1430712631853	6.93724684169801	6.73941168936945	6.54682167918561	6.73737409126018	7.01444646929671	-0.164673828181894	0.457062588175346	0.740328517046477
Merged-chr15-98872247-4	chr15	98872180	98872380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1075.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	5.34054871210426	5.38816377241149	4.92253400318749	4.84905475852158	5.41123906589663	5.70720840987414	5.5064562143213	5.58079387602736	0.747773070383167	0.0156278262002455	0.10797641633734
Merged-chr18-70644544-4	chr18	70644468	70644668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76276.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	6.64966236476912	6.30696426325016	6.43648572089782	6.62874309924606	6.71034660447619	6.81152085501673	6.78600177391271	6.61542307202449	0.30471521373741	0.150400571260535	0.433033574599801
Merged-chr6-31318672-4	chr6	31318573	31318773	+	941.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040261, intron 3 of 4)	intron (NR_040261, intron 3 of 4)	80100.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	4.16206855610197	4.36872401637847	4.49997236328813	4.43957262173681	4.37762115781171	3.95786089686076	4.36364286456822	4.00705530536461	-0.428179032252543	0.301438367328097	0.613453913648291
Merged-chr14-120342127-3	chr14	120342030	120342230	+	760.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	35678.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	3.72533802920493	3.77255637748392	3.88142740421915	3.85184686680729	3.77472156431456	3.84505591924754	4.20126668801015	3.66763594938999	0.21274089792528	0.642704931679229	0.849327332982684
Merged-chr11-53783900-4	chr11	53783830	53784030	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13457.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	5.08331388015951	5.37820817333518	4.86352207844866	4.73248610391819	5.44721150935865	5.32377325873987	5.21672505816013	5.01133759184419	0.445400931237941	0.183896060086365	0.481093979545859
Merged-chr5-136248311-4	chr5	136248208	136248408	+	903.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291240, exon 23 of 23)	3' UTR (NM_001291240, exon 23 of 23)	-3368.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	4.45743388599627	4.62502926706418	4.26423941219486	4.60753021173893	4.33312452826991	4.63513349647998	4.85357375595552	5.13639763149446	0.56292117372167	0.15578120685762	0.441613368280918
Merged-chr17-15529097-3	chr17	15528990	15529190	+	605.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1789.0	NM_008799	18567.0	Mm.323	NM_008799	ENSMUSG00000014771	Pdcd2	AI528543|Pcd2|RP-8	programmed cell death 2	protein-coding	3.29068176047518	3.12116149520512	3.23690848687117	3.15718155155492	3.18198074366436	3.23107721987181	3.11006330612088	2.99260326785135	-0.257580993895151	0.641849936579143	0.848925046283704
Merged-chr7-90017367-4	chr7	90017251	90017451	+	870.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-11808.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	4.56743689137183	3.86364306987372	4.34266293731427	3.90593288237399	4.18880824469467	4.1416037288011	4.19388880625626	4.41951910685763	0.122687367013041	0.782606510747269	0.91529005173258
Merged-chr16-20509146-4	chr16	20509065	20509265	+	869.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172265, exon 16 of 16)	3' UTR (NM_172265, exon 16 of 16)	-7821.0	NM_001347176	13544.0	Mm.247259	NM_007889	ENSMUSG00000003233	Dvl3	b2b2866Clo	dishevelled segment polarity protein 3	protein-coding	4.1431727669207	4.21661596306751	4.19129590544193	4.45757947429566	4.01019742579839	4.05744545346906	4.34537559557767	4.51541781670618	-0.0663602010133283	0.874175636940862	0.952832392676241
Merged-chr9-101034602-4	chr9	101034521	101034721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311149, intron 1 of 13)	CpG	263.0	NM_001311149	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	7.59304653457337	7.72834345380657	7.6293538550802	7.68432483187273	7.69118476901519	7.74478713745712	7.89603827685084	7.54394794794991	0.0814225415030623	0.63400409820026	0.844935157053758
Merged-chr1-9593943-4	chr1	9593835	9594035	+	861.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015470, intron 3 of 4)	intron (NR_015470, intron 3 of 4)	-7332.0	NM_178399	76982.0	Mm.491098	NM_178399	ENSMUSG00000067879	3110035E14Rik	AI415019|AV164974|R75066	RIKEN cDNA 3110035E14 gene	protein-coding	4.37895238703569	4.4306230202986	4.84148370140583	5.01736679228705	4.56964394313133	4.46171222091427	4.31380590028686	4.42241322359407	-0.580734286350264	0.143535054625849	0.4218968702052
Merged-chr18-46963096-5	chr18	46962954	46963154	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178377, intron 2 of 6)	intron (NM_178377, intron 2 of 6)	4178.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	3.90416944038637	3.618478315303	3.99212909445718	3.89731999617915	3.71079804455626	3.59465803992822	3.52797105026578	3.65353100916763	-0.706144253044065	0.136996461026256	0.411597237120623
Merged-chr5-122145546-4	chr5	122145452	122145652	+	952.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7490.0	NM_183307	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	4.32175871978787	4.69296995031484	4.32240203813931	4.224193216088	4.77366401623446	5.05750826985069	4.57356649738853	5.06538286486218	1.03770573955261	0.00541251408354921	0.0503670205194077
Merged-chr11-61861187-4	chr11	61861088	61861288	+	920.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie1a|DNA|hAT-Charlie	-6096.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	4.04948009388217	4.7232617907874	3.99193887482086	4.30300379229559	4.46769333823319	4.77115211622365	4.57884891046379	4.59779622431983	0.673575396700271	0.104548153569913	0.355592181266975
Merged-chr5-122154806-3	chr5	122154695	122154895	+	779.638855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3484.0	NM_013636	19047.0	Mm.280784	NM_013636	ENSMUSG00000004455	Ppp1cc	PP-1G|PP1|dis2m1	protein phosphatase 1, catalytic subunit, gamma isoform	protein-coding	2.99509332383005	3.40128109524302	2.99536247246464	3.19075733738872	3.78709942268428	3.44143986075628	3.52735016836714	3.54060004552575	1.46528851364631	0.00913487957509642	0.0739533260966883
Merged-chr8-72443828-4	chr8	72443755	72443955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028500)	promoter-TSS (NM_028500)	-25.0	NM_028170	72254.0	Mm.30136	NM_028170	ENSMUSG00000052794	1700030K09Rik	-	RIKEN cDNA 1700030K09 gene	protein-coding	8.04700232520471	8.08607274086965	8.16791582784852	8.02611002128234	8.11325092405497	8.20580855041579	8.08662001960082	7.98212577742128	0.0245249596286168	0.874919221364857	0.952974613103639
Merged-chr5-93267584-4	chr5	93267499	93267699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007635)	promoter-TSS (NM_007635)	26.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	6.55574979871533	6.74680983655189	6.77848975163531	6.19997386223346	6.48461592095887	6.71686172706677	6.49081022465942	6.58411272939194	-0.00861288052151075	0.971005321778415	0.989565142300925
Merged-chr2-165928033-4	chr2	165927931	165928131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-43193.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	5.90462933905406	5.68696695657758	6.3014674551024	6.21733737830239	5.4947671753435	5.50777341199908	5.65954740860501	5.73589578611174	-0.74492655931258	0.00718837799493728	0.0621174647689257
Merged-chr1-13328586-4	chr1	13328520	13328720	+	937.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	43809.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	4.50079761528168	4.46809697855717	4.20212830859786	4.65530506166476	4.50901469150387	4.17353535339613	3.97844838200333	4.19963196547694	-0.558033199476579	0.180937418209738	0.477349133292311
Merged-chr11-109650375-4	chr11	109650244	109650444	+	925.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021880)	promoter-TSS (NM_021880)	-577.0	NM_021880	19084.0	Mm.30039	NM_021880	ENSMUSG00000020612	Prkar1a	1300018C22Rik|RIalpha|Tse-1|Tse1	protein kinase, cAMP dependent regulatory, type I, alpha	protein-coding	4.2051375777387	4.28882048995887	4.20577769236028	4.02645423672022	4.24948414331038	4.13544415314308	4.09504187878407	4.33128814974025	0.0859241230264736	0.829669646643725	0.934618333601978
Merged-chr13-93231227-4	chr13	93231126	93231326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38809.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	6.90655235209271	7.06239809808538	7.35638156009452	7.3542968899122	6.78890086636859	7.26474778787231	7.27062910658148	7.05866298425918	-0.121482962249675	0.578421441468444	0.814695658189852
Merged-chr4-88537586-4	chr4	88537481	88537681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14787.0	NM_010510	15977.0	Mm.1245	NM_010510	ENSMUSG00000048806	Ifnb1	IFN-beta|IFNB|Ifb	interferon beta 1, fibroblast	protein-coding	7.19229711177458	6.97086660909836	7.27880801927475	7.54613859834225	7.0641239484891	6.77746576960904	7.20067913635255	7.09704180798938	-0.311809532900234	0.148450390027472	0.430181586604462
Merged-chr14-64834047-5	chr14	64833857	64834057	+	971.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 6 of 9)	intron (NM_177338, intron 6 of 9)	115900.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	3.49110942333893	3.66021628678917	3.94961851552432	3.55160433189168	3.42350136401007	3.88641101922808	3.59407009729719	3.81200869441754	0.0486883575107826	0.922463300156925	0.971298693028147
Merged-chr14-27412896-4	chr14	27412794	27412994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	-15940.0	NM_028945	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	5.29917403805008	5.08887310516889	5.19582191810597	6.03951762954237	5.84526785336851	5.69114423257522	5.66991330799772	5.93840527070172	0.49383095160409	0.151791722282336	0.4355376708322
Merged-chr10-4430542-4	chr10	4430445	4430645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358796, intron 1 of 13)	L2|LINE|L2	-1379.0	NR_002891	433224.0	Mm.153111	NR_002891	ENSMUSG00000112693	Gm5512	EG433224	required for meiotic nuclear division 1 pseudogene	pseudo	6.52643011134611	6.46462188941451	6.51070636059257	6.85656433714129	6.67461808718153	6.54450381275936	6.66551988961031	6.80659463720238	0.0858315491737621	0.696265468440452	0.877172308963588
Merged-chr5-103824842-4	chr5	103824743	103824943	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133919, intron 7 of 19)	intron (NM_133919, intron 7 of 19)	70270.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	4.19849370701081	4.45023491725325	4.49030657081876	4.53978561018498	4.82034594238856	4.27252433523933	5.0746227184929	4.89388991555683	0.787426989266831	0.0436802382127139	0.212773881399723
Merged-chr1-180261129-4	chr1	180261059	180261259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-4859.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	7.88758707015999	8.14463646116775	7.78874604419112	8.06860544788753	7.98665813779035	8.01353447605042	8.16285572736958	7.9831367905038	0.0656188372650107	0.69788395424235	0.878043796632193
Merged-chr8-66323223-4	chr8	66323110	66323310	+	944.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 4 of 7)	intron (NM_175188, intron 4 of 7)	-63091.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	4.58369286771212	4.74818688475304	4.54220080634749	4.83457668175043	4.70956125976389	4.58403586834267	4.60403417732736	4.84301247650283	-0.0135509519456489	0.968995294649827	0.988862740113602
Merged-chr2-59402027-4	chr2	59401924	59402124	+	971.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15342.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	5.03633127614637	4.98466950215782	5.16507543343541	5.33142143563263	5.08131087567187	4.73553166419104	4.87181762999135	5.09925715356351	-0.358681827320246	0.268720532921031	0.580334925598049
Merged-chr4-101293224-4	chr4	101293179	101293379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-27997.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	6.16394861026532	6.39495920714316	6.51761291023049	6.54813211480958	6.72393818539769	6.55715657243761	6.50029665756037	6.20269633324979	0.137874789239942	0.556952412902637	0.802252160011434
Merged-chr8-94779313-4	chr8	94779209	94779409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009142, intron 2 of 2)	intron (NM_009142, intron 2 of 2)	7129.0	NM_009142	20312.0	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	6.46120837824606	6.60660323165917	6.87189113143724	6.09487372677055	6.45930504081374	6.7381193620273	6.39435577578343	6.66447231372836	0.0645316871609985	0.799424600427407	0.922561881598139
Merged-chr11-63132482-2	chr11	63132382	63132582	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302259)	promoter-TSS (NM_001302259)	-87.0	NM_001302259	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	4.23032058715047	4.26341923218336	4.86766604027874	4.4311105401776	4.21683989162206	4.25701502622865	4.21275182882745	4.60431171910016	-0.325032417028353	0.432229252937849	0.722316953369406
Merged-chr5-137333603-4	chr5	137333487	137333687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031406)	promoter-TSS (NM_031406)	-5.0	NM_031406	83704.0	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding	5.4431377651118	5.43533415238806	5.32308858336548	5.23233570496315	5.84488837680289	5.46804506989117	5.72068482005327	5.52393507914912	0.531917412292747	0.0542765697290533	0.243314772436345
Merged-chr2-23052748-4	chr2	23052627	23052827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12486.0	NM_145994	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	7.2658404758292	6.82504959985946	6.97594768616748	7.37757671474966	7.00727540482664	6.92498350699673	7.34920012906851	7.36177014075826	0.0473402309027387	0.832959885300217	0.936195352530936
Merged-chr5-99523020-2	chr5	99522920	99523120	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	206040.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	2.91588062743386	3.14890202686273	2.97746870989035	2.69194249073319	2.58102188824407	3.08903609260398	2.842335368365	2.97585644148483	-0.256438332709616	0.697542663347023	0.877936058816528
Merged-chr11-106131964-4	chr11	106131858	106132058	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 6 of 15)	intron (NM_011947, intron 6 of 15)	27969.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	4.63362299238652	4.51987563672251	4.40386090944873	4.31159686768783	4.13333355391366	4.39887691637435	4.05282732320559	4.5214196120901	-0.429177168189342	0.282311999010548	0.594517682403819
Merged-chr19-55654612-4	chr19	55654529	55654729	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	(A)n|Simple_repeat|Simple_repeat	47575.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	5.11993865101976	5.3275575848036	4.92989911633696	5.10331583156813	5.71815163212815	5.58072698466347	5.82558016020147	5.21967651902019	0.849466475707109	0.00499095918319586	0.0474935138637297
Merged-chr1-93174583-4	chr1	93174459	93174659	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310428, intron 1 of 31)	intron (NM_001310428, intron 1 of 31)	6136.0	NM_001310428	381284.0	Mm.193346	NM_001310428	ENSMUSG00000084989	Crocc2	E030010N08Rik|Gm976	ciliary rootlet coiled-coil, rootletin family member 2	protein-coding	3.840876690867	3.74500705714973	3.84141008223567	3.89339454954244	4.07342126777777	4.01428504535026	3.87693030881063	4.1624753625294	0.553705205762446	0.195154335722961	0.495943820287216
Merged-chr12-108765962-4	chr12	108765864	108766064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27347.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	6.16000776335397	6.14986282810201	6.05922910691359	6.16328370345165	5.89630018800024	6.07802909233064	6.25887289341313	6.01177249173861	-0.117823560983671	0.615860466755103	0.83467255086626
Merged-chr9-21164140-4	chr9	21164004	21164204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1610.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	5.16640330414087	5.19428016631439	4.83440591110752	4.48236440129724	4.76818504377643	5.04663132030692	4.91976945436901	4.97481298309715	-0.020642493019491	0.954785032230592	0.983838959554429
Merged-chr7-141345038-4	chr7	141344957	141345157	+	901.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133191, intron 4 of 20)	B1_Mur1|SINE|Alu	6055.0	NM_133191	98845.0	Mm.27451	NM_133191	ENSMUSG00000025504	Eps8l2	AI042819|AW545405|Eps8r2	EPS8-like 2	protein-coding	4.64729656268274	4.88725781554038	4.0842698912926	3.67328474589405	5.45151578959901	5.33408102269692	4.70636471653647	5.04008746764552	1.52768841364089	0.00109227232215374	0.0144323095635012
Merged-chr12-98832571-3	chr12	98832470	98832670	+	851.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 21 of 43)	MTD|LTR|ERVL-MaLR	61548.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	3.42645709571451	4.05448616920568	3.7558397139161	3.5304425691055	4.44775500052886	4.09737559390439	4.33535180226267	4.15480696881692	1.50869876255569	0.00121331909685131	0.0156994800935792
Merged-chr1-152042207-4	chr1	152042254	152042454	+	836.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 1 of 5)	intron (NM_197990, intron 1 of 5)	47966.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	3.35555021965959	3.1823941586177	3.45885391097948	3.31448227717788	2.96220048994408	3.02308438125354	3.34233416526316	3.35410903852137	-0.568135298825365	0.319844874919044	0.631656381031906
Merged-chr4-139169507-4	chr4	139169401	139169601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11154.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	6.31261020734057	6.19264807978872	6.82506918818407	6.29159487387532	6.91322839352192	7.24625785705788	6.84312170671434	7.09851211694235	0.868886294604938	0.000215861534002416	0.00387309613134571
Merged-chr13-67082256-4	chr13	67082160	67082360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001012448)	promoter-TSS (NM_001012448)	-715.0	NM_001292066	432769.0	Mm.458849	NM_001012325	ENSMUSG00000058883	Zfp708	Rslcan11	zinc finger protein 708	protein-coding	5.47386685693118	5.54255734609841	5.47481121253363	5.4091947783239	5.57799431687144	5.47032117102143	5.55441729783767	5.52595204653325	0.113178762990171	0.66915098968406	0.863397557169305
Merged-chr5-35670672-4	chr5	35670572	35670772	+	952.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042615, intron 2 of 6)	intron (NM_001042615, intron 2 of 6)	9108.0	NM_001042615	78558.0	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	5.37406572633866	5.01262994708784	5.86566518334742	5.67359692289439	4.60363631374067	5.11744289561695	5.22888528672428	5.39946688562181	-0.741320918245046	0.042228355907906	0.208447195840504
Merged-chr8-108718304-3	chr8	108718207	108718407	+	818.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	3663.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	4.09090263757972	4.02769499243141	4.1738305353518	4.27667784724846	3.55331373736884	3.48774835778096	3.73761039762531	3.69380798572548	-1.58461452824271	0.000752387379654332	0.0107151223082064
Merged-chr10-18055526-4	chr10	18055454	18055654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111065)	promoter-TSS (NM_001111065)	-386.0	NM_009048	19707.0	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	7.10579593330603	7.13628429418827	7.3572365319443	7.27788174950559	7.24266892622554	7.2959145053348	7.34019798911826	7.1947385006786	0.0573699659864002	0.751450849247643	0.902145552360104
Merged-chr18-60757092-6	chr18	60756907	60757107	+	771.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8342.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	3.03241539419944	2.94151623623394	3.15366033435311	3.24403253453331	3.18674681825246	3.14118279258838	3.08378290858593	3.26227488952891	0.246778166155472	0.662807217443657	0.860240669860217
Merged-chr11-59472504-4	chr11	59472394	59472594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178417)	promoter-TSS (NM_178417)	-20.0	NM_178417	237775.0	Mm.339604	NM_178417	ENSMUSG00000054519	Zfp867	-	zinc finger protein 867	protein-coding	5.65529945834868	5.83110402861476	5.92172473180839	5.53971576113691	6.25641797349498	5.88472699198909	5.62775344288233	5.6788356036213	0.269735342651889	0.343794378648008	0.652384432892204
Merged-chr19-53763163-4	chr19	53763041	53763241	+	873.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	85835.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	3.58587280087419	4.00584321954887	3.97069881608117	3.75713668023398	3.62967103891028	4.1876692574572	4.245718923654	3.81719810518775	0.4165518744924	0.386892680682362	0.687932705110785
Merged-chr17-57338202-4	chr17	57338092	57338292	+	923.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20494.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	4.62469164833223	4.49610735845223	4.41294072521186	4.69318253281855	4.81171314440053	4.87179066169191	4.4819339064861	4.49934897085351	0.23947770871561	0.509479366803263	0.774067760028004
Merged-chr7-66136437-1	chr7	66136337	66136537	+	764.0	f0_balb.idr	intron (NM_001081163, intron 2 of 2)	intron (NM_001081163, intron 2 of 2)	26922.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	4.11281077336507	3.81842206749263	3.97441371224375	4.40647765568036	3.54160566312949	4.09766173231288	3.95747876328677	3.92222378434656	-0.603875318964455	0.208855183637421	0.513225958576539
Merged-chr11-37136614-4	chr11	37136516	37136716	+	915.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-192375.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	4.17923535320382	3.59813681983055	3.59894670180475	4.15071777875918	3.95790578668549	4.16999034250851	4.31868104089777	4.13396302517094	0.590058213426066	0.220758560902212	0.528760195965722
Merged-chr1-121462910-3	chr1	121462798	121462998	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029955, intron 10 of 23)	intron (NM_029955, intron 10 of 23)	31831.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	4.73707532191309	4.31382438536101	4.57558469792815	3.9728050949591	6.88203145024658	6.3184819659458	6.73937929496838	6.69018258495115	4.05515550750509	1.23631859214827e-40	5.1764659453248e-37
Merged-chr13-34993692-3	chr13	34993553	34993753	+	918.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110331, intron 1 of 9)	intron (NM_001110331, intron 1 of 9)	491.0	NM_011868	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	4.18701593117713	3.84538097550111	3.85642293188444	3.4693223879263	3.89760767709518	4.18213066619477	3.84051110980255	4.37755142941385	0.640537566608412	0.185995344587099	0.483915587117665
Merged-chr9-97018943-3	chr9	97018826	97019026	+	683.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145134)	promoter-TSS (NM_145134)	-571.0	NM_145134	211949.0	Mm.491271	NM_145134	ENSMUSG00000046997	Spsb4	D030068E18Rik|SSB-4|Ssb4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding	3.43621971079724	3.42522700838218	3.49624697217992	3.49497282457619	3.53303307611092	3.55262509486852	3.95758972038239	3.84835322294495	0.837960312140078	0.0868636337962833	0.32143834624308
Merged-chr7-101949165-4	chr7	101949064	101949264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15307.0	NM_001162974	69358.0	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	5.02119782411046	5.20867032496565	5.16507774227535	4.7910333505345	5.69765566472196	5.81163236826261	5.17280069085	5.53940673287828	0.967131026178376	0.00197649678390334	0.0232000436315066
Merged-chr11-115538221-2	chr11	115538101	115538301	+	781.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1971.0	NM_133354	170930.0	Mm.29923	NM_133354	ENSMUSG00000020738	Sumo2	SUMO-2|Smt3A|Smt3b|Smt3h2	small ubiquitin-like modifier 2	protein-coding	2.9123041063501	3.09655563847869	3.13386997275468	2.71642231728719	2.95649338909478	2.7480266254705	2.77682933304948	2.84907205193949	-0.584094390980846	0.364415637682711	0.669265956462516
Merged-chr7-109959199-4	chr7	109959095	109959295	+	889.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021494, intron 1 of 22)	intron (NM_021494, intron 1 of 22)	1227.0	NM_021494	19347.0	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	4.28424605740615	4.53379376513067	4.14604505616635	3.95062613785826	4.36518323944409	4.45696952312101	4.42823721468914	3.81315587441349	0.12610453778135	0.777129301832633	0.913034573074491
Merged-chr9-85597174-2	chr9	85597074	85597274	+	754.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152160.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	3.67346218094223	3.24767026103259	3.24142414405792	3.28805808118973	3.32015417128885	3.47858122647791	3.61125494821956	3.41917316361127	0.306102178442688	0.561314529403397	0.804919855922082
Merged-chr16-34573732-4	chr16	34573666	34573866	+	871.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-59739.0	NM_177357	545156.0	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	3.51647730870769	3.8031208358831	4.13068566098142	3.69137798770528	3.71715042611427	3.43669149731125	3.77292302469113	3.57418453352693	-0.497525019228721	0.323114079922742	0.634593485315956
Merged-chr3-123515790-4	chr3	123515712	123515912	+	743.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7476.0	NR_028574	69895.0	Mm.260791	NR_028574	ENSMUSG00000104960	Snhg8	1110065M07Rik|2010109N14Rik	small nucleolar RNA host gene 8	ncRNA	4.03817227317461	3.91054891645063	3.63147868671483	3.83962622813327	3.94431463629637	3.86493653226412	3.97683156729354	3.74389342538427	0.0750613753639177	0.866530244640999	0.950001534260153
Merged-chr18-66458148-3	chr18	66458053	66458253	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021451)	promoter-TSS (NM_021451)	-451.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	6.68858218641518	6.84036836218329	7.13025680333445	6.90885281092117	6.97144597464412	7.07270054298818	7.09440520047138	7.26351968297401	0.275873204663109	0.170403187880843	0.463560227942354
Merged-chr12-73358806-4	chr12	73358688	73358888	+	853.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50775.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	4.04114914196817	3.79257639533951	4.44428794397489	4.46445262562622	4.57881974161881	4.21849896560974	4.02524099036811	4.36234869601879	0.226534091949333	0.619904715821345	0.836911326019849
Merged-chr11-77381771-3	chr11	77381678	77381878	+	898.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	33498.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	3.55830849832086	4.09540318701094	3.77558586864296	3.2101399461574	3.98780618482188	3.73625707677496	3.80762669379959	3.29878662634538	0.0941106757145689	0.869672108038107	0.951055924778477
Merged-chr3-121890782-4	chr3	121890678	121890878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62451.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	6.88016047498224	6.72663635308369	7.03330915162953	7.38205174931553	6.9235762205752	6.49327356576993	6.88604062499914	6.88987031995678	-0.318943101386553	0.176323786937527	0.471307205534908
Merged-chr16-33963889-4	chr16	33963782	33963982	+	985.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009471, exon 2 of 6)	exon (NM_009471, exon 2 of 6)	3156.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	4.97134016926064	5.30836135003743	5.07731778080144	5.55510966184453	5.00265704292903	5.1476760338203	4.94844920193621	4.93183737073373	-0.495698331351127	0.130066443191406	0.401487875155012
Merged-chr9-63589471-4	chr9	63589383	63589583	+	946.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030068, intron 3 of 21)	RMER16_Mm|LTR|ERVK	13010.0	NM_030068	78250.0	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	4.66175751342325	4.11759372042491	4.11697828929065	4.32597327156373	4.3775628693062	3.70690774894806	3.99934826799563	4.29571898761863	-0.478246754521764	0.303352999827656	0.615991874439641
Merged-chr1-174236188-4	chr1	174236086	174236286	+	937.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011465, intron 42 of 51)	intron (NM_011465, intron 42 of 51)	14790.0	NM_146715	258710.0	Mm.377647	NM_146715	ENSMUSG00000050788	Olfr419	MOR267-6	olfactory receptor 419	protein-coding	5.09849586980161	5.38403585382922	5.67451976038403	5.63117295905557	4.82156484318254	5.05344001683626	5.29495078922042	4.91007194436422	-0.830437204809296	0.0106311738370094	0.0825208639634126
Merged-chr1-148993822-3	chr1	148993716	148993916	+	784.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	928623.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	3.32089386246338	3.26556732734702	3.49024997956049	3.54228043762566	3.56084927815763	3.43363311672108	3.57630196946275	3.25822171922175	0.167684799940117	0.747193169748407	0.900439560306813
Merged-chr11-8609346-3	chr11	8609268	8609468	+	749.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	55167.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	2.92114539729207	2.87770602116377	2.98129854540496	2.91608004709165	2.72131359593555	3.02988010805472	2.91108630518634	2.92004855011559	-0.13034970137451	0.828564581254502	0.934199261424475
Merged-chr14-55863950-4	chr14	55863812	55864012	+	892.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001040072, exon 3 of 8)	exon (NM_001040072, exon 3 of 8)	9797.0	NM_001040072	277154.0	Mm.319347	NM_001040072	ENSMUSG00000075592	Nynrin	AA409373|C80530|mKIAA1305	NYN domain and retroviral integrase containing	protein-coding	4.11919270257916	4.01004212861608	3.58365679892838	3.67199104810681	3.90327415810678	3.76116791090829	3.50984140389592	3.85311503490562	-0.259428666963172	0.597446142579739	0.82529980761181
Merged-chr4-149782583-4	chr4	149782501	149782701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8334.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	6.14803376528585	5.85785116996703	6.16884640037257	6.35124689232414	5.92505440016492	6.13271855448925	6.15659355556882	6.20294913439117	-0.0835386340395276	0.736209295306656	0.895940115759074
Merged-chr6-84752957-4	chr6	84752850	84753050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 19 of 21)	intron (NM_177077, intron 19 of 21)	-159042.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	6.53194838341909	6.17636857804339	6.61146408460473	6.56566372041067	6.39196948929473	6.51814709762957	6.43361536112326	6.75001244281669	0.0616054887238594	0.787307535210359	0.917496407091441
Merged-chr5-118269172-4	chr5	118269067	118269267	+	836.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23940.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	4.06925075429573	4.02045859832694	3.92742373370788	4.19680656805033	3.96526448412549	3.99667349015943	3.80804830344405	3.87402628287565	-0.418523896250592	0.329721792921578	0.641061663435264
Merged-chr4-10874557-4	chr4	10874453	10874653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026005)	promoter-TSS (NM_026005)	55.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	6.84861785859363	6.2711375787353	6.5493832554504	6.65405520932301	6.9507451604359	6.91457081633078	6.95338387212906	6.88438148773992	0.467007731176518	0.0287657540343803	0.162954047466228
Merged-chr8-117224817-4	chr8	117224741	117224941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32178.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	5.51488691498856	5.15787204913878	5.34979962752229	5.30898231563127	5.3078980571841	5.36863400493496	5.58694010151261	5.25420769125757	0.0885757205844916	0.758637519954516	0.905219520105318
Merged-chr2-167632119-4	chr2	167632022	167632222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311131)	promoter-TSS (NM_001311131)	-117.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	8.24340735944397	8.00303066455058	7.80005949160374	7.76223667051669	8.25474869680737	8.26802214217247	7.89776535576409	7.92341082979202	0.179086301197757	0.354292229641775	0.661031778977135
Merged-chr13-64266309-4	chr13	64266189	64266389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045798, intron 1 of 2)	intron (NR_045798, intron 1 of 2)	8699.0	NM_172587	218294.0	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	6.23129289533267	6.42215093314091	5.55165819331995	6.24576588533715	5.80401427443165	5.47090628324955	5.83893308565232	5.57737555913617	-0.752408617433492	0.010322295823159	0.0808106791021375
Merged-chr8-123235684-4	chr8	123235595	123235795	+	804.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357300, exon 1 of 2)	exon (NM_001357300, exon 1 of 2)	563.0	NM_001357301	78779.0	Mm.41459	NM_030176	ENSMUSG00000033594	Spata2l	2610039E05Rik|AI648233	spermatogenesis associated 2-like	protein-coding	4.07965664609754	3.78472413503101	3.60543578154985	3.73871290755825	3.79862404528193	4.06371097868052	4.10470778553823	4.2427986275452	0.682405583595048	0.131889261528139	0.404295682442351
Merged-chr8-94874462-4	chr8	94874343	94874543	+	832.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053246, intron 1 of 8)	intron (NM_053246, intron 1 of 8)	1869.0	NM_053246	114255.0	Mm.203949	NM_053246	ENSMUSG00000040631	Dok4	-	docking protein 4	protein-coding	3.31650691835428	3.35791602426737	3.31690989708958	3.64317984088425	3.26744070998543	3.54647006813904	3.41903487891452	3.53610741252859	0.0370580116857889	0.944200772509254	0.979954897588816
Merged-chr3-21951834-4	chr3	21951742	21951942	+	868.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	-124810.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.05925491765115	3.85289295290693	3.80980833003142	3.7664064331163	4.05054501387381	4.2730686624108	3.94868866494154	3.96321112911138	0.533694586197667	0.213699734122907	0.519197643961308
Merged-chr14-78732271-2	chr14	78732188	78732388	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081336, intron 1 of 29)	CpG	441.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	3.27283094660408	3.34948747696213	3.38578434647146	3.29552754387566	2.98633678378563	3.38710660029046	3.61295029152854	3.01345546390844	-0.187067564859779	0.747737334679691	0.90068822490119
Merged-chr1-178342773-4	chr1	178342699	178342899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B3|LTR|ERVL	-4984.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	7.22577973988154	7.55656802624193	7.2711035717171	7.51730458781168	7.4380047474474	7.32286645585308	7.47084089883795	7.27683830846872	-0.0378587628277809	0.838600996347601	0.9387708599746
Merged-chr14-30612716-4	chr14	30612622	30612822	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	-2412.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	5.08077137180878	4.72612025999406	5.1745892682647	4.71318830286342	5.39658512585574	5.08478507812904	4.92220564154032	4.8691523344139	0.334830192149489	0.334040028845588	0.644790107476612
Merged-chr6-121226296-4	chr6	121226200	121226400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_017379)	TTS (NM_017379)	15566.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	5.68702920388047	5.51109596459825	5.58476067461041	5.41648511109078	5.89554103415841	5.64847952373988	5.70750541600311	5.58083521781876	0.307529606949465	0.247499356405166	0.558653066598831
Merged-chr18-44780993-4	chr18	44780879	44781079	+	902.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085373, intron 1 of 18)	intron (NM_001085373, intron 1 of 18)	31203.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	4.20123057626995	3.47088826489912	4.15546187857717	4.36968015645509	4.28951718578732	4.18306410833922	4.22744235083645	4.588097505166	0.56832087912914	0.249236535739578	0.560328612484111
Merged-chr10-83152358-4	chr10	83152270	83152470	+	797.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021439, intron 2 of 2)	intron (NM_021439, intron 2 of 2)	166873.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	3.83620767474728	4.49791948931726	4.22113889708937	3.73193292804412	3.69219674154434	4.11960297940337	4.20132207045684	3.77768303656834	-0.379754556510339	0.444953198543462	0.73115209509395
Merged-chr15-73426163-4	chr15	73426062	73426262	+	726.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2971.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	4.41809672113458	4.08230342912103	4.02021270869107	4.32633318124475	3.99099437363611	4.1429544713215	4.19443624753612	4.45284054112837	-0.0675233559956408	0.872067058667222	0.951877155217282
Merged-chr2-58111246-4	chr2	58111149	58111349	+	896.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	48873.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	4.00423532355109	3.7091237545655	4.27665217410548	4.17739703639592	4.23930748409173	4.1782735201098	4.17353688665334	4.05191259989742	0.258970400603093	0.547526011266366	0.796913059286089
Merged-chr11-79623754-4	chr11	79623665	79623865	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003283)	promoter-TSS (NR_003283)	-602.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	4.25220195747977	3.91668859229682	4.03113002313085	4.33085720949524	4.15394816526641	3.82171970278735	3.80684750013085	4.2088668523654	-0.352456796381549	0.430627412199611	0.721163884265961
Merged-chr12-40657236-6	chr12	40657207	40657407	+	853.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 8 of 52)	intron (NM_172803, intron 8 of 52)	211254.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	2.8726507345348	3.29668659171638	3.07181999795669	3.09074931781662	2.81696246744984	3.30222861591047	3.17688431730599	3.18776120462093	0.139284146002371	0.818072071335834	0.930184536191906
Merged-chr2-127133967-4	chr2	127133855	127134055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144818)	promoter-TSS (NM_144818)	-1.0	NM_144818	215387.0	Mm.29786	NM_144818	ENSMUSG00000034906	Ncaph	A730011O11Rik|Brrn1|CAP-H|HCAP-H|mCAP-H	non-SMC condensin I complex, subunit H	protein-coding	5.91103198613226	5.82821543250579	5.39090648198746	5.77112078699162	6.11878980640222	6.17328842061099	5.73987287637736	6.15242037596946	0.502473851786596	0.0583489854676114	0.253876006331749
Merged-chr2-181739511-4	chr2	181739419	181739619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-23813.0	NM_001171615	17932.0	Mm.458718	NM_008665	ENSMUSG00000010505	Myt1	Nzf2|Nzf2a|Nzf2b|Nztf2	myelin transcription factor 1	protein-coding	5.60344651258792	5.77458684519971	5.46511844691059	5.28134266404134	5.97313533974958	5.55118618957328	5.62748408759446	5.62656088381965	0.313815561823054	0.2747879644637	0.58655108626407
Merged-chr1-138125465-3	chr1	138125368	138125568	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111316, intron 2 of 31)	intron (NM_001111316, intron 2 of 31)	49658.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	4.57755549288131	4.62833062126799	3.96946966426473	4.47329499393254	4.38628896986403	4.08948299511445	4.10827140274707	4.07267758794527	-0.63909769663567	0.13808813786257	0.413451207879521
Merged-chr15-24596480-4	chr15	24596389	24596589	+	682.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	817275.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	3.64710526041733	3.70897323815938	4.16288006595911	3.76578725919017	3.80817427432533	3.57879839686309	3.93666464701975	3.85760483137765	-0.0822984228498269	0.862244215686895	0.948061063834304
Merged-chr10-92722397-4	chr10	92722314	92722514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008682)	promoter-TSS (NM_008682)	4.0	NM_008682	17997.0	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding	7.92220156071865	8.08636127618612	7.77632221480143	8.37146124125556	8.05187546728538	8.17222186858675	8.46395703418816	7.88112128794863	0.116352611391419	0.574191558917406	0.812143683447198
Merged-chr11-82140106-3	chr11	82139991	82140191	+	721.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24906.0	NM_021443	20307.0	Mm.42029	NM_021443	ENSMUSG00000009185	Ccl8	1810063B20Rik|AB023418|HC14|MCP-2|Mcp2|Scya8	chemokine (C-C motif) ligand 8	protein-coding	3.24705353733189	3.51582037779774	3.24746649529527	3.40537570839037	3.08327055820408	3.23645202069978	2.98890734691731	3.30181291543914	-0.805375892298228	0.152167433896384	0.436105885702638
Merged-chr4-129060130-4	chr4	129060032	129060232	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	1861.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	4.74349447825829	5.11564405405424	4.52514513874572	4.90891985854971	5.44053863084979	4.95958584547042	4.94198791750874	4.56911804714859	0.357424726435174	0.349454071959294	0.656994301272332
Merged-chr13-113491109-1	chr13	113491009	113491209	+	604.0	f0_c57.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	11735.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	3.82718402334402	3.58772818815324	3.87767117673151	3.69586748962303	4.1572445817534	4.0478373276351	3.70714529197934	3.77365567585348	0.560145830132348	0.222988082776706	0.531069778572449
Merged-chr11-111066568-4	chr11	111066480	111066680	+	955.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008425, intron 1 of 1)	intron (NM_008425, intron 1 of 1)	416.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	4.93996435692689	4.52803094240666	4.65979860301128	4.3556818478281	4.74163722868074	4.53046302842622	4.74973515188911	4.87289388774325	0.237028637897269	0.518910087369538	0.779770852077667
Merged-chr5-115510020-10	chr5	115509835	115510035	+	905.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	3259.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	3.47683060226611	3.62837243059092	3.53349465157793	3.45131445241078	3.57185247956456	3.64909261916512	3.51986795805218	3.68660316780402	0.281580179758796	0.555137048560674	0.801243003883125
Merged-chr1-34803917-4	chr1	34803819	34804019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183019, intron 1 of 9)	(TG)n|Simple_repeat|Simple_repeat	2197.0	NM_183019	226970.0	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	5.37970335887981	5.53139491823937	5.38063196644561	5.25447015048068	5.22501132733487	5.12649858703752	5.29639890911982	5.19503705602598	-0.306088344222021	0.288966836543178	0.600929003808641
Merged-chr13-22035140-4	chr13	22035029	22035229	+	845.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175665)	promoter-TSS (NM_175665)	514.0	NM_175659	319168.0	Mm.250564	NM_175659	ENSMUSG00000069302	Hist1h2ah	-	histone cluster 1, H2ah	protein-coding	3.94695852599688	4.46175366652897	4.20759849844974	3.84681823710687	4.2714404627532	4.33555539368593	4.48015927582543	4.60637100143736	0.723004962650153	0.0864164417566067	0.320614223486651
Merged-chr5-92127450-4	chr5	92127341	92127541	+	881.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	10284.0	NM_001359197	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	4.27077082352046	3.93326540731834	4.42123394378996	3.94990689321058	3.91393942771564	3.91574977945355	3.72150433017504	4.09862302915492	-0.620446688885525	0.17181602186385	0.4650957452081
Merged-chr10-81349971-2	chr10	81349871	81350071	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163165, intron 2 of 9)	intron (NM_001163165, intron 2 of 9)	455.0	NM_001163165	15353.0	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	3.0214233168873	3.1198527066178	3.24860765187216	2.66884755739024	3.33728814447557	3.00101825863605	2.88273385401367	3.02027857816733	0.20010390353559	0.755227658288106	0.903634896880696
Merged-chr5-92118047-4	chr5	92117971	92118171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	19654.0	NM_001359197	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	6.41959120615728	6.69472398936905	6.0220841510403	6.75370638081063	6.52288113339314	6.82643728728096	6.82280921579754	6.50309822322574	0.222755817218976	0.376392209248259	0.679172347306585
Merged-chr11-100737354-4	chr11	100737267	100737467	+	887.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	848.0	NM_024456	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	3.82110125132503	4.07547414014901	3.87353171334254	3.91476280830608	3.94139157164225	3.50440013580689	3.7528463608474	4.33367858848395	-0.00969742124087165	0.984152962792068	0.994237242628259
Merged-chr15-97821561-4	chr15	97821488	97821688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	-6725.0	NM_001204281	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	6.32508015210626	5.76368564778171	5.88871688498971	5.87392494838405	5.55730958633502	5.62749979142219	5.25856412081557	5.44494647745757	-0.818221783777922	0.00389404897372817	0.0392487272587082
Merged-chr10-41810068-4	chr10	41809986	41810186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243075)	promoter-TSS (NM_001243075)	-218.0	NM_026643	103268.0	Mm.338605	NM_026643	ENSMUSG00000019813	Cep57l1	2410017P07Rik|4930484D11Rik|AI607327|cep57R	centrosomal protein 57-like 1	protein-coding	7.21816908650434	7.39809544885321	7.52981307999018	7.57700391177635	7.20161356195721	7.37395040444286	7.61067174711455	7.29144776877632	-0.094840009008785	0.625181968441221	0.83974613775056
Merged-chr2-129601228-5	chr2	129601044	129601244	+	894.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	5682.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	4.9988559604772	4.74197764246825	4.99971503806568	4.95243288360959	4.31024295546666	4.50995644681657	4.54333861707257	4.7233018027085	-0.872009339719828	0.0135876761373571	0.0979598095594995
Merged-chr11-100814704-4	chr11	100814600	100814800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	7870.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	5.94900122448265	6.23692870111288	6.01772783201591	6.17375009113762	6.2516361298507	5.95491873515979	5.87286516232323	6.35695157223871	0.0373797456589414	0.880762643381595	0.955230903447487
Merged-chr11-75415292-4	chr11	75415100	75415300	+	692.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011340, intron 4 of 7)	intron (NM_011340, intron 4 of 7)	7423.0	NM_011340	20317.0	Mm.2044	NM_011340	ENSMUSG00000000753	Serpinf1	AI195227|EPC-1|Pedf|Pedfl|Sdf3	serine (or cysteine) peptidase inhibitor, clade F, member 1	protein-coding	3.01050600039314	3.06197078434167	3.01087559249184	2.91485416369785	2.98450910834081	2.92020262409917	3.00018641364477	3.28285338555278	0.238845466914264	0.680617884660929	0.868928920613391
Merged-chr1-45864690-4	chr1	45864584	45864784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60910.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	6.4908618187571	5.58637637766311	7.32632007866182	7.27339410427248	5.86738788121998	5.75680556589692	6.20514924098914	6.45396295537745	-1.07688755797772	0.0670232663455081	0.276143150914964
Merged-chr3-118081986-4	chr3	118081912	118082112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-213076.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	6.8094940564965	6.65071295467735	7.07130725513216	7.15560855749372	6.89041329362337	6.54774135948414	6.44814993460269	6.49442878082555	-0.463125896377372	0.047276701917893	0.223845902236951
Merged-chr6-128846251-4	chr6	128846141	128846341	+	699.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19926.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	3.2956651539272	3.338360449993	3.35605888928632	3.24883353127877	3.2122183185958	3.52912361542976	3.50623103832205	3.70985336922766	0.650319289110767	0.211650613521268	0.516351762401644
Merged-chr3-89908542-4	chr3	89908450	89908650	+	828.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	4646.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	4.74833069477238	4.04721565117681	3.95850822205466	4.27340599839608	4.25802569125718	4.56485433311574	4.37347711851634	4.06606091793432	0.0809847237412117	0.854815184364998	0.945298752280211
Merged-chr10-40882992-4	chr10	40882901	40883101	+	953.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031877)	promoter-TSS (NM_031877)	142.0	NM_027879	71713.0	Mm.46063	NM_027879	ENSMUSG00000038446	Cdc40	1200003H23Rik|EHB3|PRP17	cell division cycle 40	protein-coding	4.34381154825318	4.64779166012642	4.43450258649116	4.33175813255669	4.37009857022482	4.32471017597248	4.61325487141151	4.89839713335501	0.285956006663142	0.459494920687984	0.742013500840902
Merged-chr13-6690224-1	chr13	6690124	6690324	+	564.0	f0_balb.idr	Intergenic	RMER1A|Other|Other	-41453.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	3.17308860595634	2.90550334333696	3.11917351675283	3.03637901463608	3.04121512010999	2.91253766334897	2.79877100671248	3.11745468053678	-0.349813588804644	0.558700764682644	0.803340438546067
Merged-chr18-34502657-3	chr18	34502560	34502760	+	833.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146084, intron 1 of 20)	intron (NM_146084, intron 1 of 20)	4163.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	4.1498497569699	4.38837594920971	4.48783927311869	4.51649220517102	4.3665751518763	3.88152760180711	4.03373853439043	4.1953196940013	-0.628381168614856	0.136252651214458	0.410690032931242
Merged-chr4-123283795-4	chr4	123283570	123283770	+	957.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001356377, exon 1 of 14)	exon (NM_001356377, exon 1 of 14)	759.0	NM_130881	230721.0	Mm.277091	NM_130881	ENSMUSG00000011257	Pabpc4	-	poly(A) binding protein, cytoplasmic 4	protein-coding	3.03397357738224	3.48730683264185	3.36960517423113	2.99236269321789	3.55791439491974	3.42479234457197	3.71325309818428	3.77234519877562	1.34543829757079	0.014315245710018	0.101478425893175
Merged-chr18-52567512-4	chr18	52567411	52567611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Helitron1Na_Mam|RC|Helitron	-37644.0	NM_001286182	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	7.23349663815604	7.22347438378966	6.88314880844219	6.75161830469712	6.74793130826246	6.69949726995687	6.5051698511562	6.15622031187314	-0.679445436480692	0.00513910532086981	0.0484691105915187
Merged-chr3-96759871-4	chr3	96759774	96759974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026406, intron 3 of 8)	intron (NM_026406, intron 3 of 8)	32263.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	6.11673804784051	6.33131453450441	6.50375419488682	6.31152258628457	5.93276024558708	6.11895481108303	5.91150437982705	5.91371442288731	-0.546678123307824	0.0202369963178664	0.129060940857397
Merged-chr19-58978914-4	chr19	58978810	58979010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175172, intron 14 of 14)	intron (NM_175172, intron 14 of 14)	-35238.0	NM_001327998	73442.0	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	5.63959395285282	5.74911732868391	6.14457187509865	5.57245081193621	5.54105747432155	5.3598624446845	5.6120291119645	5.47121928008853	-0.474302972432927	0.0973290210531634	0.341855126030444
Merged-chr8-94184521-4	chr8	94184422	94184622	+	949.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5433.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	4.62917502154843	4.81963692941132	4.62990654381556	4.84921693793642	4.67428123140821	4.92169936038223	4.56689052659036	5.01740929514096	0.114133250655622	0.742687857365394	0.898585398596147
Merged-chr11-70633008-3	chr11	70632932	70633132	+	917.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-6090.0	NM_010326	14723.0	Mm.377085	NM_010326	ENSMUSG00000050675	Gp1ba	GP-Ib alpha|GPIba|GPIbalpha	glycoprotein 1b, alpha polypeptide	protein-coding	3.78519932627745	3.54332613213892	4.07288874797193	3.47033521183678	3.48277277691038	3.40023010532026	3.27463239974657	3.47215220155	-1.04237531704489	0.0529968544688881	0.240108920508768
Merged-chr5-123886601-4	chr5	123886499	123886699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6579.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	6.83110960603072	7.10951468321786	5.98887856352066	6.01822843219604	6.90866043769087	6.9152247728967	6.03031569508222	6.08042128933147	-0.0456655806501693	0.931648801137236	0.975351667244339
Merged-chr11-79251068-4	chr11	79250958	79251158	+	917.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019653, exon 2 of 9)	exon (NM_019653, exon 2 of 9)	3637.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	4.09188314273043	4.48921628771994	4.4138418707592	4.50823278139838	4.25472708152275	4.45784467377751	4.02333008873025	4.32720683238245	-0.295270924914724	0.463252769971792	0.744647770407916
Merged-chr5-21200223-4	chr5	21200118	21200318	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 3 of 26)	intron (NR_153365, intron 3 of 26)	13951.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	5.64379406617426	5.58123803818498	5.19810939835642	5.39840625817331	5.52357682437947	5.34100553678836	5.20552543036064	5.05345187393928	-0.28567656638737	0.346453744375211	0.654719806798213
Merged-chr16-44757913-4	chr16	44757815	44758015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-7821.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	6.1127833990074	6.44556297370929	6.07149487726618	6.41563891135901	6.27156448932265	6.06429241116309	6.14329195116949	5.97800479895265	-0.243088048929162	0.314355870497904	0.626354487695056
Merged-chr9-85458562-4	chr9	85458435	85458635	+	921.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131385.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	3.85015947262355	4.25229574860232	4.36243813647706	4.09785097509486	4.61601036749638	4.09479668307786	4.67220082645509	4.48062535573452	0.803701444170225	0.0527847866933674	0.239600046683706
Merged-chr4-48322329-3	chr4	48322219	48322419	+	761.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010569, intron 3 of 16)	L2c|LINE|L2	42559.0	NM_001281977	16348.0	Mm.317706	NM_010569	ENSMUSG00000028344	Invs	Nphp2|inv	inversin	protein-coding	3.60690231539551	3.48300039693288	3.91378026203558	3.81817515529372	3.71843510607989	3.66523729736273	4.02413422844567	3.767509047789	0.233810775113287	0.624462509414603	0.83944507946406
Merged-chr16-32189285-4	chr16	32189179	32189379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	9479.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	7.51491610402045	7.33255663182236	7.1741872858719	7.2068587633621	7.21673644124221	7.37407060366177	7.32041419614573	7.39127041920554	0.0202897477784953	0.912613604954271	0.967264759221129
Merged-chr15-77840690-4	chr15	77840599	77840799	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	U6|snRNA|snRNA	1476.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	4.98255305212118	4.88642666667799	4.87182211552919	5.05138949911979	4.99797686608987	5.12257897420504	5.40135409330381	5.23683198688675	0.444149269199239	0.154970127707564	0.440431971255608
Merged-chr2-59440658-2	chr2	59440558	59440758	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43995.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	2.95399096766727	3.00724755404571	3.01437173882416	2.7148696977192	3.14194111294421	2.78834243280548	3.16540182215688	2.82416735147543	0.321563035079683	0.606417995270337	0.829368409964156
Merged-chr2-5691982-4	chr2	5691908	5692108	+	938.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	-15962.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	5.41518583462362	5.44646456931022	5.76234447604676	5.81705426929539	4.66742541853069	5.08089510862432	5.38884315095217	5.41231475418447	-0.837765744105762	0.0119847174735455	0.08986202518166
Merged-chr16-90045789-3	chr16	90045689	90045889	+	766.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71090.0	NM_001145886	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	3.50659031995285	3.00188581410764	3.21935439951015	3.43174823190348	3.26764366379187	3.33250009530955	3.68105708506708	3.6040749459851	0.586785666257161	0.297874150441098	0.610052773823821
Merged-chr11-44439344-2	chr11	44439252	44439452	+	774.25	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	31196.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	2.70541642201503	2.48314227982178	2.54084142615967	2.18956145371181	3.24833945665481	3.28958060922429	3.4052516291578	3.42055320149323	5.68243828797359	2.17193184218826e-10	1.58073554800735e-08
Merged-chr4-108347239-4	chr4	108347131	108347331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19079.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	6.85448031937196	6.70794344109245	6.60993253383507	5.99551048204249	6.95412191514696	7.15613935493875	6.80761741472815	6.39759588424661	0.412990426082845	0.134320904703188	0.407935723647066
Merged-chr14-55685961-4	chr14	55685864	55686064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4147.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	5.23233635393679	5.59419450929323	5.82822400696277	5.95058493717637	5.41754790066285	5.41461209311018	5.98590631732105	6.01254752706825	0.0751953275305175	0.815090828853936	0.928708522466333
Merged-chr11-21569332-7	chr11	21569251	21569451	+	967.095215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316675, intron 1 of 8)	intron (NM_001316675, intron 1 of 8)	2583.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	4.8743335400326	4.68612387675734	4.60989024101615	4.46671937663379	4.61641766513632	4.51289706649524	4.74527747094596	5.32507575272147	0.375099871530743	0.329846468126856	0.641198977354203
Merged-chr10-20073416-2	chr10	20073316	20073516	+	779.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 11 of 29)	intron (NM_008580, intron 11 of 29)	-75504.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	2.64116186831385	2.57210651798788	2.64142078114426	2.50406344527576	3.10018053404128	3.13606581949283	3.00985498347766	2.90595388150054	2.18084316120902	0.000490341570319958	0.00760724120178821
Merged-chr19-37209148-4	chr19	37209065	37209265	+	949.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027314, intron 1 of 5)	intron (NM_027314, intron 1 of 5)	1620.0	NM_001164336	69104.0	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	4.12096294756741	4.39466111042505	4.74358973179854	4.16969137058932	4.90925122331944	4.68684803931934	4.64866705590167	4.7750851633276	0.874631114087967	0.0213195635846852	0.133583205668513
Merged-chr11-53520754-4	chr11	53520653	53520853	+	850.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361969, intron 1 of 9)	intron (NM_001361969, intron 1 of 9)	565.0	NM_001361969	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	4.16635895120954	4.07666019697831	4.16699023390224	4.31801092917342	3.95002221862749	4.19748708413175	4.1036035698514	4.07160542370146	-0.30687702247571	0.452868646497223	0.737097260336271
Merged-chr17-87299172-4	chr17	87299076	87299276	+	992.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	16290.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	5.64443185432781	5.11175033139783	5.75618496672529	5.73042560211338	5.08446729195934	5.05284480429937	5.07838086980323	5.0636724065187	-0.940230907113993	0.00267781742471996	0.0292472558652972
Merged-chr11-114884898-4	chr11	114884812	114885012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5129.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	7.05144246053943	7.00404072970383	6.82263448050401	6.86052083175922	6.97657902223942	6.85092437438136	6.81569553510527	6.73086823369677	-0.114096393826015	0.562359104909276	0.80562248376479
Merged-chr15-33083659-3	chr15	33083567	33083767	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176073, intron 1 of 7)	intron (NM_176073, intron 1 of 7)	538.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	5.16802031807445	4.75176757666797	5.10653518016654	5.11327963792944	5.18816842936599	4.99782483684016	5.14337223775831	4.89534342778358	0.0414072052493829	0.896728877704219	0.961312480776369
Merged-chr7-135605577-2	chr7	135605477	135605677	+	586.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316679)	promoter-TSS (NM_001316679)	-251.0	NM_001316679	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	3.62805224972551	3.90777898921308	3.27430532175211	3.13244720212052	3.66797353300337	3.63841508615657	3.61330586726102	3.51874362974069	0.294923921391845	0.592817753370909	0.822423445862576
Merged-chr10-86463945-4	chr10	86463848	86464048	+	783.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013722, intron 2 of 13)	intron (NM_013722, intron 2 of 13)	34948.0	NM_001164495	27204.0	Mm.394931	NM_013722	ENSMUSG00000059602	Syn3	-	synapsin III	protein-coding	4.42037001217329	3.72650463609282	3.81703333929765	4.20402662659529	3.9104184755147	3.82190321747349	3.80203662745134	4.10917954019884	-0.429183195076144	0.36487822900408	0.669636959088136
Merged-chr12-70494996-4	chr12	70494885	70495085	+	863.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	intron (NR_037248, intron 2 of 4)	41831.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	3.97463025774699	4.2537456006573	3.97518459607168	4.15853764478403	4.29897786795342	3.80373681202092	4.31736628459384	4.29479410039384	0.250685010059835	0.558103936662333	0.803001356505594
Merged-chr7-30909037-4	chr7	30908943	30909143	+	967.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001346085, exon 5 of 11)	exon (NM_001346085, exon 5 of 11)	5278.0	NM_001346089	17136.0	Mm.241355	NM_010758	ENSMUSG00000036634	Mag	Gma|siglec-4a	myelin-associated glycoprotein	protein-coding	5.7523674264161	5.55811941348241	5.73163879306447	5.37971592582149	4.97175076396215	4.94203181863712	5.13175632176735	5.37502555354345	-0.882486909347994	0.00407131031635263	0.0406041469815979
Merged-chr11-20332795-4	chr11	20332713	20332913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018861)	promoter-TSS (NM_018861)	-100.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	7.68119699244902	7.68674895829704	7.66560214184733	7.82254503068195	7.76149228922233	7.82590365439705	8.01188944108258	7.67725237394541	0.133276853923026	0.435273740189731	0.724496061008439
Merged-chr8-119358966-2	chr8	119358866	119359066	+	854.2000119999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14428.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	3.28558552420708	3.20895357870874	3.23164277716593	2.99780973380729	3.23591161707203	3.02685500961242	3.10441508464388	3.17317147328701	-0.133318153855946	0.81294305604412	0.927731304883839
Merged-chr9-32507713-4	chr9	32507600	32507800	+	963.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	33752.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	5.94752923086618	5.79955577172298	6.26954349909478	6.52977310410856	5.57616003430967	5.28116148462887	5.39616609397684	5.68241199341616	-1.1139619896482	0.000175819504491965	0.00326645372081704
Merged-chr3-22152925-4	chr3	22152852	22153052	+	939.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 2 of 15)	intron (NM_030732, intron 2 of 15)	76300.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.60534062547533	4.40544126704687	4.39862153417547	4.42930897375843	4.52686844060897	4.38494420724205	5.02630302849312	4.30273374005627	0.299047955917209	0.445103322241209	0.731219385569316
Merged-chr12-51848073-4	chr12	51847917	51848117	+	876.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18481.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	3.98405613103886	4.12689719460632	3.79638343573824	4.00019865114644	3.79576994729178	3.35057111410188	3.62086449154796	3.63255120909626	-1.09015284156869	0.0273216499297913	0.157480583071716
Merged-chr11-87358995-4	chr11	87358920	87359120	+	762.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177167)	promoter-TSS (NM_177167)	-26.0	NM_177167	320472.0	Mm.341988	NM_177167	ENSMUSG00000046442	Ppm1e	AW049266|B930008A12Rik|POPX1|PP2CH|mKIAA1072	protein phosphatase 1E (PP2C domain containing)	protein-coding	3.63790386508512	3.54412912543978	3.5865255375215	3.39523139703987	3.72475134122207	3.46887144325005	3.46308437037803	3.68609152121342	0.204933813745562	0.675820114442491	0.866929785285144
Merged-chr2-157457613-4	chr2	157457487	157457687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 4 of 13)	CpG	33294.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	6.47305465461442	6.50782765229	6.32266937109401	6.03370333148708	5.91603463706962	6.46168849990343	6.03438891863584	6.10417612928967	-0.304078222669058	0.239327177257875	0.549703033561985
Merged-chr11-5741195-4	chr11	5741102	5741302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361590)	promoter-TSS (NM_001361590)	-26.0	NM_178623	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	6.25524193227773	5.79572010050799	5.90747038584228	6.01968112760364	6.21817260875635	5.90861120440514	6.20633263697225	6.09977253160675	0.181562291464697	0.461911825697797	0.743501704400988
Merged-chr9-55285471-1	chr9	55285371	55285571	+	601.75	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-1846.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	3.40612841649425	3.17794502754533	3.35808319164101	3.19875627225161	2.90694220112667	2.99233411944112	2.80369391062549	3.08082441352703	-1.42009418168499	0.0193972811700357	0.125322599292182
Merged-chr1-172126721-4	chr1	172126612	172126812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159525)	promoter-TSS (NM_001159525)	-43.0	NM_001356513	19298.0	Mm.247764	NM_023041	ENSMUSG00000003464	Pex19	Pxf	peroxisomal biogenesis factor 19	protein-coding	6.54881024310252	6.49449074324529	6.14955698756074	6.39302416731819	6.47401474169498	6.52339954030118	6.43642106806673	6.22797203149638	0.0232909110358594	0.917226471153516	0.969459238985449
Merged-chr2-166684237-4	chr2	166684101	166684301	+	984.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	29631.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.64178906887879	4.77157566765239	4.56421865325749	4.60966458257001	4.63671924439595	4.65432045994093	4.37239812761803	4.34192365453022	-0.295759970849902	0.412822967897627	0.707849408347942
Merged-chr15-31602195-4	chr15	31602079	31602279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007637)	promoter-TSS (NM_007637)	63.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	6.48606020713763	6.44325967445848	6.50330880774885	6.22594843617406	6.39139484828402	6.07905081205582	6.43779577193817	6.32762096046183	-0.126478490590116	0.578833917270245	0.814986435843799
Merged-chr3-138521082-4	chr3	138520990	138521190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5101.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	5.07021658600659	5.11539285590968	5.20907709374322	5.24435479032166	5.57472221618914	5.72253821313305	5.27733338941151	5.35927074170626	0.58506792381274	0.044952403415475	0.21667685533352
Merged-chr1-183671446-4	chr1	183671338	183671538	+	947.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77539.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	4.81615798318834	4.50182112622613	4.44555230719961	4.78948743852468	4.85039626402749	4.71464278643163	4.86295697891127	5.04210850495901	0.442070827848855	0.203463117195535	0.506267958430434
Merged-chr9-106306908-4	chr9	106306812	106307012	+	896.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 8 of 10)	intron (NM_027354, intron 8 of 10)	25851.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	4.83747997214783	4.64993459954368	4.03584882689827	4.72537506107102	4.68958602210767	4.58501671345315	4.90944449254452	4.4053305139004	0.128105788263847	0.752637229795218	0.902626829735826
Merged-chr10-82812019-4	chr10	82811919	82812119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038042)	promoter-TSS (NR_038042)	-104.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	5.3199292242814	5.16051378034623	5.08261547214733	5.40984164896202	5.68397477916232	5.77126422046823	5.68846437788524	5.28572914752073	0.624366671420016	0.0331929229046288	0.178966115117447
Merged-chr12-87406579-1	chr12	87406479	87406679	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-18224.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	3.96554457045039	4.366167305135	4.17090180137936	3.71166192175957	4.42400477176924	4.63498145321756	4.24305635780458	4.16833471835923	0.776721169273959	0.0758010624272675	0.29746630403079
Merged-chr1-60860732-3	chr1	60860607	60860807	+	840.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48318.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	3.48590979019483	3.82823044055422	3.36400110955471	3.25620784908979	3.66268687141099	3.82123329947246	3.73357124574267	3.48452629799885	0.582958899120351	0.257791484148986	0.569638652166482
Merged-chr1-191756742-4	chr1	191756637	191756837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134829, intron 4 of 7)	intron (NM_001134829, intron 4 of 7)	38342.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	6.06713825156016	5.65613044001088	6.22527026598911	6.42671297170282	5.99211622406885	6.01700107017712	6.13704613237268	5.99957287796823	-0.158768439030891	0.556039509817983	0.801797663573886
Merged-chr16-31025120-3	chr16	31025021	31025221	+	750.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 2 of 3)	intron (NM_198626, intron 2 of 3)	56311.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	4.31490632717247	3.61760409585143	4.27709273453155	3.872456790004	3.73168210855648	3.75158598742684	3.73785669915065	4.45573183758832	-0.233272009925283	0.654618320811981	0.855659697629251
Merged-chr10-80939879-4	chr10	80939783	80939983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9792.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	7.0642994499935	7.33714734008487	7.10109047656084	6.4097756401993	7.33941616575554	7.15567226835892	7.30789122444842	6.717273659624	0.197124905665215	0.45330762097511	0.737415719616292
Merged-chr7-118800277-4	chr7	118800196	118800396	+	784.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 19 of 30)	intron (NM_027815, intron 19 of 30)	55317.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	4.37746314628612	4.25508524920485	4.21464421255134	4.21583978222556	4.00373933486929	3.66550060144618	4.05912442020239	4.29629853489388	-0.613721874391229	0.157283659162454	0.443782607377631
Merged-chr5-105011810-4	chr5	105011703	105011903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29086.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	7.01579949162374	6.58736120679874	6.88641426428607	6.6922201981333	6.47317987707962	6.61083821752209	6.69042462859187	6.3563368131993	-0.377604100472599	0.0864376728462156	0.320645565745298
Merged-chr15-97422357-4	chr15	97422246	97422446	+	953.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175059.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	5.12471925520137	4.68303473255852	5.26373209060319	5.13608979149737	4.77018003089713	4.67540948718501	4.47492442914808	4.62777493558061	-0.864282555732455	0.014580838602977	0.102769979510765
Merged-chr18-74190233-3	chr18	74190138	74190338	+	560.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17580.0	NM_001164355	66468.0	Mm.283406	NM_025581	ENSMUSG00000036223	Ska1	2810433K01Rik|AV117428	spindle and kinetochore associated complex subunit 1	protein-coding	3.02942246507878	3.22878770044687	3.02981131005868	2.94744850798431	3.07003494378641	2.73350712288759	2.77034699422918	2.96960696187937	-0.699635667666295	0.268097187887783	0.57992128294732
Merged-chr2-93199005-4	chr2	93198851	93199051	+	927.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001356535, exon 7 of 9)	exon (NM_001356535, exon 7 of 9)	11403.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	3.67830875409875	3.78163151863519	3.84127267737651	3.88785039291598	3.91202393042529	4.28091551934433	3.66491971537961	3.78718410838735	0.349247979904357	0.452410023790956	0.736755126828417
Merged-chr11-9338321-3	chr11	9338207	9338407	+	945.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 27 of 61)	L5|LINE|RTE-X	146365.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	3.34864027603539	3.18119839702235	3.40303136750263	3.60970853467255	3.31627441113487	3.21687948727159	3.03103216711446	3.40111923364984	-0.554988783484498	0.324637790507099	0.636164229014807
Merged-chr8-61224059-4	chr8	61223970	61224170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021506)	promoter-TSS (NM_021506)	-101.0	NM_021506	59009.0	Mm.27949	NM_021506	ENSMUSG00000031642	Sh3rf1	2200003J05Rik|Posh|R75531|Sh3md2	SH3 domain containing ring finger 1	protein-coding	5.63680602998937	5.70990043476011	6.52847909248812	6.2712765172398	5.52552589175168	5.51075678364919	5.63630509515584	5.76452605482911	-0.784076142769995	0.0107725860333179	0.0833549191505092
Merged-chr8-92875955-4	chr8	92875852	92876052	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357375, intron 6 of 12)	intron (NM_001357375, intron 6 of 12)	20619.0	NM_001357374	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	5.42501280238233	5.30269845540415	6.13845688289208	6.43621136262217	6.8740987588979	6.23077776131212	6.85845783357712	6.8174725585307	1.1732983112224	0.000622386998092604	0.00919677893652345
Merged-chr9-21328247-4	chr9	21328153	21328353	+	911.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359227, intron 1 of 22)	intron (NM_001359227, intron 1 of 22)	7534.0	NM_001199186	68682.0	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	4.49578859883585	4.42642376024341	4.62429168529994	5.3455724503244	4.70934665846579	4.43438727717791	4.56205883665033	4.84375406742479	-0.327156679870433	0.441909629038806	0.728741873487782
Merged-chr13-110602049-4	chr13	110601952	110602152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	207008.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	8.16723750855358	8.01739486104788	8.01010322539564	8.25811435702728	8.1794512532317	8.04463734106441	7.81390299834222	7.82327805965202	-0.183071460486671	0.297958288753586	0.610164772946546
Merged-chr2-72323239-4	chr2	72323140	72323340	+	949.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 2 of 19)	intron (NM_023057, intron 2 of 19)	37539.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	4.91987381017134	4.75876736822825	5.5330980429728	5.05876071011428	4.42521915827861	4.21682755866048	4.89650877474925	4.69280919144341	-1.05973747289553	0.00793742219690019	0.066868983784411
Merged-chr5-76522640-4	chr5	76522520	76522720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-6687.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	5.94450147867449	6.00155306756186	6.17422607820881	6.41727278327912	6.05903628099474	5.89998055064092	5.89241936565757	5.84677328327166	-0.363783709031216	0.152912600863239	0.437419043569042
Merged-chr12-25093453-5	chr12	25093349	25093549	+	972.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010496)	TTS (NM_010496)	2643.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	4.91432444041547	5.22861169493219	4.87987127933677	4.83999501266197	4.6210697591443	4.77953261406765	4.74547378498356	4.94610275562458	-0.405648448686729	0.230686063425085	0.540202767092188
Merged-chr18-39517359-4	chr18	39517247	39517447	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30102.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.95155497222602	5.71768809302048	5.56026643923308	5.32078766400182	5.63915790379753	5.13391785748781	5.34151303819892	5.50444185317037	0.0170430931435188	0.957960504941276	0.984986432571795
Merged-chr19-37613145-4	chr19	37613056	37613256	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175353, intron 18 of 21)	intron (NM_175353, intron 18 of 21)	62738.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	4.80661881631633	5.08071219833528	4.57508938707515	5.27020383753675	5.48400574704657	5.52883234649592	5.48542681429962	5.26625872552841	0.838121494436112	0.0133205776994859	0.0966687380921224
Merged-chr3-146655431-4	chr3	146655331	146655531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4114.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	5.84189715260144	5.61300874356047	5.95822961827491	6.18490476322653	5.96211921976151	5.91938427316413	6.0328393238938	6.05952116120754	0.094612221270857	0.717013420932178	0.886862882314135
Merged-chr8-22708060-4	chr8	22707977	22708177	+	881.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1494.0	NM_001159774	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	4.17397544144909	4.52832550441524	4.22186651138265	4.59060956945738	4.28330286818486	4.30014858891837	4.15690013336256	4.07223421853194	-0.481518262464543	0.235196254340382	0.545186250291271
Merged-chr14-56777625-4	chr14	56777528	56777728	+	897.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025682, intron 1 of 8)	CpG	690.0	NM_001360420	66645.0	Mm.20129	NM_025682	ENSMUSG00000021938	Pspc1	5730470C09Rik|AI327109|AI449052|PSP1	paraspeckle protein 1	protein-coding	4.22444136067222	4.01283849144333	4.31198366129111	4.15761264576188	4.30920324601436	4.25692243699331	4.33327592567252	4.1767846708529	0.238488218730435	0.541679892712059	0.793401254763463
Merged-chr2-11599636-4	chr2	11599536	11599736	+	803.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 2 of 11)	intron (NM_152824, intron 2 of 11)	3563.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	3.70424019878817	3.66572431183383	3.70473629497525	3.95993832879688	4.13852999383909	3.58019243983429	3.63503180960456	4.07963682720305	0.332905194329952	0.499579277081155	0.768387448003553
Merged-chr4-34882399-1	chr4	34882299	34882499	+	1000.0	f0_balb.idr	intron (NM_013889, intron 1 of 7)	CpG	549.0	NM_013889	30046.0	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	4.22141360267567	4.04565638117708	4.30346710176317	4.10935788816587	4.11892691934548	3.89376723015318	3.87216801928168	4.08669558284631	-0.430620663237028	0.306679115690325	0.619072424937513
Merged-chr7-101296827-4	chr7	101296757	101296957	+	921.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001111111, exon 5 of 18)	exon (NM_001111111, exon 5 of 18)	5231.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	4.50078110559477	4.81719808840311	4.36536030761264	4.60229719672802	4.77803974736311	4.6754213922828	4.48126006534426	4.66009763987077	0.152799008944592	0.67160438627592	0.864873059373178
Merged-chr4-32179941-4	chr4	32179856	32180056	+	899.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	215849.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	5.23729816639161	4.76563882878734	5.65659738331945	4.75881881514653	4.40509152571408	4.49411137023599	4.86605865840726	4.92245459088736	-0.925816504593587	0.0231842529486378	0.141081639790638
Merged-chr11-82747202-4	chr11	82747108	82747308	+	892.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009839, intron 5 of 13)	intron (NM_009839, intron 5 of 13)	17113.0	NM_009839	12467.0	Mm.4126	NM_009839	ENSMUSG00000020698	Cct6b	CCT-zeta-2|CCTzeta-2|Cctz-2|TCP-1-zeta-2	chaperonin containing Tcp1, subunit 6b (zeta)	protein-coding	4.21814893453402	4.51146843080785	4.55275936263495	4.60653165574402	4.32217334084507	4.07920947904428	4.24726169703819	4.35193043710082	-0.555139885700551	0.15609617077222	0.441990326602117
Merged-chr16-11343507-4	chr16	11343396	11343596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 1 of 20)	MIR3|SINE|MIR	20592.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	7.53383878684751	7.76659913992154	7.54430239764805	7.65659504157155	7.65297475488757	7.57650118895214	7.78413580078212	7.5482273940142	0.0160599191523092	0.925653365647401	0.972574816051611
Merged-chr13-12395221-4	chr13	12395117	12395317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144835)	promoter-TSS (NM_144835)	-158.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	8.64404024155762	8.84475209698575	8.87565809929901	8.4101130575256	9.06759008033998	9.06521854449045	9.11796288334244	8.77069385671883	0.388177033550741	0.0256824418259854	0.151141010891428
Merged-chr5-80953114-3	chr5	80952994	80953194	+	772.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67477.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	3.19725296438924	2.78879340899668	3.4236940763446	3.22318564590583	3.25402466296677	3.37186187220606	3.40914577421454	3.47236746006016	0.722557094855046	0.220977406788312	0.529040790359911
Merged-chr11-47197484-4	chr11	47197384	47197584	+	945.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 2 of 7)	intron (NM_011891, intron 2 of 7)	181818.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	5.01603664574306	4.59251581665692	4.91362843345898	4.9701604284886	4.75336576004729	4.7243081369037	5.35863293986714	5.13903101953337	0.260600633744263	0.463747216976619	0.744988576808808
Merged-chr14-70576971-4	chr14	70576875	70577075	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360475)	promoter-TSS (NM_001360475)	-849.0	NM_153136	213484.0	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	5.3969229112903	5.75710344506275	5.51344134202195	6.1189736353139	5.51288981464132	5.07160995949719	5.40066101496957	5.45313945043126	-0.635905360312067	0.0446048342421433	0.215658707819693
Merged-chr6-13598465-4	chr6	13598361	13598561	+	990.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155435, intron 1 of 3)	intron (NR_155435, intron 1 of 3)	9637.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	4.80779772051722	5.44165836727593	5.27516043563671	4.99837497347504	5.16474044006074	5.02490887349247	4.93628294047067	4.53964604883832	-0.397516427331385	0.267259099181769	0.578917693872766
Merged-chr4-128698559-5	chr4	128698393	128698593	+	795.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 1 of 14)	intron (NM_018774, intron 1 of 14)	9755.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	2.92942456185684	3.01550544705749	2.86945492760537	2.7341343273196	2.7094126330244	2.97814568862006	2.58981121771828	2.92824094198931	-0.362033164134573	0.574850610862205	0.812628374305066
Merged-chr5-148477745-4	chr5	148477674	148477874	+	972.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	73899.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	5.36228252237666	5.19638879211348	5.52926586958185	5.68906868480746	5.41671291599288	4.91326956320709	5.50134477193473	5.47246085011879	-0.207107537095931	0.509701354300304	0.774155699422613
Merged-chr5-151333290-4	chr5	151333199	151333399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35376.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	7.0014521745323	6.99486012665396	7.17355123591998	7.29262022118719	7.51625701271044	7.46988669860403	7.07939293591193	7.31879877486585	0.311486092006151	0.119985885566049	0.38344891804151
Merged-chr12-34591908-4	chr12	34591812	34592012	+	769.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	RCHARR1|DNA|hAT-Charlie	-63023.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	4.05795683098469	3.85551521550065	4.05855282091586	4.22018094376853	3.93413319863671	4.32269231890713	4.17789437277058	4.23694815137291	0.263192573014908	0.535653010488946	0.789809240803911
Merged-chr4-47320090-4	chr4	47319973	47320173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-33149.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	6.213249845571	6.0218194685846	6.25121071197805	6.18239554869982	6.04900814153407	6.18751699616507	5.8428959391708	5.93991002453251	-0.245127581017003	0.300404815585643	0.612422387893833
Merged-chr12-102389587-2	chr12	102389487	102389687	+	876.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 9 of 9)	intron (NM_177620, intron 9 of 9)	50226.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	3.05299457532582	2.98041019593055	2.93808047112425	2.53879841255743	2.58588882718787	3.05001852168408	2.73486323990459	2.93647248000482	-0.234046435551457	0.730632377706873	0.89318474903903
Merged-chr8-56767352-1	chr8	56767252	56767452	+	804.0	f0_balb.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	216218.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	3.05950846498695	2.7315444208561	3.11192370831151	3.441658387429	2.34661794250852	2.48909389633013	2.68644899316963	2.4666938750741	-3.94030335592554	9.26575934446129e-05	0.00190669986811047
Merged-chr7-80369182-4	chr7	80369046	80369246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172903, intron 3 of 23)	MER117|DNA|hAT-Charlie	2229.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	6.09772415801863	5.61390010400993	6.22544084721455	5.96288500359229	5.69606303219419	5.7001815885614	5.83642824696605	5.9518282456811	-0.308287604069204	0.249001587649619	0.560207151982062
Merged-chr17-70992936-4	chr17	70992828	70993028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357820)	TTS (NM_001357820)	-2412.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	5.18695736692823	5.23324270297906	4.70059324242226	4.99784753080511	5.44001635368987	5.16140437461391	5.19282185190734	5.24510286427133	0.423974986776443	0.177524441627348	0.47294004905281
Merged-chr10-126986847-4	chr10	126986741	126986941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113470, intron 1 of 7)	intron (NM_001113470, intron 1 of 7)	8124.0	NM_001113470	52468.0	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	5.64700438351898	4.97104519375554	5.6968785007686	6.01768931573963	5.33394370998663	5.48475417675421	5.59428382005941	5.54022909577749	-0.27659607580286	0.40493022604607	0.701981537472882
Merged-chr5-8423511-3	chr5	8423398	8423598	+	718.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190717)	promoter-TSS (NM_001190717)	660.0	NM_178766	319653.0	Mm.146262	NM_178766	ENSMUSG00000054099	Slc25a40	B230315F11Rik	solute carrier family 25, member 40	protein-coding	3.11587247197467	2.96008526211191	3.2879517573383	3.13520560228138	3.04819530291775	3.28789387967729	3.32623325959489	3.11470802030281	0.257805934975929	0.645543491024519	0.850934142345746
Merged-chr19-47900732-4	chr19	47900667	47900867	+	956.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001738, intron 1 of 1)	intron (NM_001001738, intron 1 of 1)	18532.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	4.39082918334362	4.32705719994201	4.77702270296545	4.82336459370339	4.30054721681509	4.52168241957138	4.75359225988421	4.08727818041735	-0.383948520801071	0.353323516656947	0.660177666767879
Merged-chr10-39613175-4	chr10	39613127	39613327	+	976.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134000, exon 1 of 9)	5' UTR (NM_134000, exon 1 of 9)	293.0	NM_134000	103213.0	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	4.65196882641106	4.7085588983566	4.83507680143705	4.58893986544799	4.38308794394893	4.5710678123957	4.70638834789743	4.83179572339392	-0.143033237529694	0.688579650533246	0.872852453079248
Merged-chr2-166701355-2	chr2	166701255	166701455	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	12477.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	2.9595081733488	3.01260975535351	2.95987385796053	2.68601725963231	3.147133595375	2.93836824376298	2.88732138130173	3.07549646570388	0.51261300483477	0.397364269298882	0.69576798253969
Merged-chr8-22701551-4	chr8	22701453	22701653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159774, intron 2 of 21)	Lx8b|LINE|L1	5030.0	NM_010546	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	6.79860102211669	7.22730170838777	6.36602625513436	6.34007018513095	6.96780557678075	7.19552583188426	6.97205982465228	6.64525372859604	0.317773032341723	0.23900385594657	0.549502744352884
Merged-chr7-126377515-4	chr7	126377441	126377641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045537, exon 1 of 13)	non-coding (NR_045537, exon 1 of 13)	393.0	NM_023712	73658.0	Mm.11112	NM_023712	ENSMUSG00000030741	Spns1	2210013K02Rik|Spin1|Spinl	spinster homolog 1	protein-coding	6.67506729850528	7.04403701506151	6.56545609164135	6.31457705692229	6.9131831433798	6.85266128630239	6.64218196541433	6.57719295236782	0.127035849171226	0.602095640375324	0.827431600688833
Merged-chr2-61583118-4	chr2	61582985	61583185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011529, intron 1 of 7)	L1M4|LINE|L1	4499.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	6.93039419322888	7.01962022701598	6.67811701611621	6.92037455036444	6.7557714527437	6.72399718372487	7.10585669268474	6.67340069389335	-0.0997371087532193	0.637275143920559	0.846715828034101
Merged-chr3-135421249-4	chr3	135421125	135421325	+	864.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025902, intron 1 of 2)	ID_B1|SINE|B4	2208.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	4.19657677720469	3.79551017674689	4.41377289799823	4.44590950260338	4.23949851713572	3.94126378779173	4.79370361834163	4.19463992877247	0.213584256077528	0.650495041276139	0.853294802585927
Merged-chr5-96804520-4	chr5	96804434	96804634	+	879.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013470, intron 2 of 12)	MER21C|LTR|ERVL	11149.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	4.16280392369897	4.93719730552396	4.06030955925957	3.76871023162707	4.55611481600918	4.64311020653563	4.09522024624456	4.00334473192754	0.092364555339346	0.856558565051307	0.946018217815712
Merged-chr1-156921770-4	chr1	156921699	156921899	+	986.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357391, intron 1 of 19)	intron (NM_001357391, intron 1 of 19)	17588.0	NM_001159966	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	5.13572874605545	5.15665401093972	4.83401779245171	5.19506822428412	5.59614536018748	4.83823233050671	5.6038395727163	5.55859115828	0.628009060137799	0.0585534448346775	0.254540774419169
Merged-chr18-36230824-4	chr18	36230726	36230926	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33666.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	5.44321606291318	5.29077483756906	5.57515904093968	5.6739323003823	5.38559430288552	5.23880872059863	5.0361187568872	5.35473626958712	-0.43899740273721	0.136782542245304	0.411349382676314
Merged-chr2-79634705-3	chr2	79634591	79634791	+	983.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080558)	promoter-TSS (NM_080558)	-734.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	3.96761559130427	3.67661104874942	3.96819562107331	4.09275715344955	3.90679937611757	4.04026307912381	4.04395684210071	4.05934719192523	0.176358555634714	0.686225123458271	0.871787672169905
Merged-chr4-41465027-4	chr4	41464946	41465146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025539)	promoter-TSS (NM_025539)	-102.0	NM_025539	66401.0	Mm.28574	NM_025539	ENSMUSG00000028443	Nudt2	2310051L06Rik|AA939917|APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding	9.02965466625956	9.04479048719728	9.01349082451524	9.09965230374031	8.99114879526128	9.31607019218669	9.09445923956689	9.05641294568799	0.0848972585708959	0.560453358653629	0.804511547928985
Merged-chr5-150097906-3	chr5	150097812	150098012	+	910.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79237.0	NM_001289566	140498.0	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	4.05375817947552	4.11396958562493	4.01224611761141	3.66367547581768	3.40590843058831	3.40002613873223	3.70936986770608	3.72244145768588	-1.22632163040584	0.0158716850936445	0.109078948853965
Merged-chr13-30633267-4	chr13	30633164	30633364	+	915.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18221.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	4.74965554196105	4.25300515981511	4.60238641525029	4.58775720597372	4.67198627247597	4.73484503629965	4.37007475261643	4.59938759924219	0.0971013276844045	0.792965604676941	0.919802981990661
Merged-chr2-132006726-4	chr2	132006614	132006814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 4 of 10)	intron (NM_175445, intron 4 of 10)	23274.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	8.24958327242316	8.25263870556918	8.32335072248515	8.25096976942489	8.1111921798774	8.20261929829229	8.24041262515757	8.16247482536855	-0.115552598590774	0.437864636918359	0.726074944466206
Merged-chr11-44399095-4	chr11	44398974	44399174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303244)	promoter-TSS (NM_001303244)	-989.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	7.24462208739208	7.55707446399276	7.13623587402499	6.71555325307978	7.07438606293161	7.31309070806072	7.10031746617869	6.63165075140199	-0.190835491199607	0.450018559083688	0.735013102731019
Merged-chr5-117358954-2	chr5	117358837	117359037	+	820.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_021539, intron 1 of 8)	B3|SINE|B2	1632.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	3.02172666495058	3.32936197709573	2.95321896934586	3.0879708598193	3.5675329227584	3.32137706691252	3.19750919187038	3.14837317841156	0.811519342650483	0.156197029933354	0.442030390967963
Merged-chr5-124480353-4	chr5	124480244	124480444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2109.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	7.93167435433491	8.2928388909885	8.15420626680533	8.18620156603974	8.1396489428934	8.17491140196747	8.2709563573063	8.15493601766914	0.0428231862264449	0.790955539421374	0.918930451102165
Merged-chr19-6980527-4	chr19	6980380	6980580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360286)	promoter-TSS (NM_001360286)	-16.0	NM_001166368	14227.0	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	7.40367000792937	7.75805684880399	7.14453219657263	6.99838016583727	7.71102747481121	8.25463333148381	7.85237267353618	7.82849023246091	0.74990493421934	0.00111648887859729	0.0146841392996445
Merged-chr17-3314336-4	chr17	3314242	3314442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12231.0	NM_001122998	24001.0	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	6.39157309483153	6.05609444783267	6.49263455294558	6.57678252360983	6.20300447350777	6.36247205318067	6.34261688405509	6.2216319380232	-0.183392743582631	0.436801331529063	0.725299585501184
Merged-chr9-40196175-4	chr9	40196073	40196273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153114, intron 1 of 6)	intron (NR_153114, intron 1 of 6)	3857.0	NM_030713	80902.0	Mm.132196	NM_030713	ENSMUSG00000025602	Zfp202	C130037E22Rik|Znf202	zinc finger protein 202	protein-coding	5.45117862705071	5.57739621073676	5.83065736216721	5.59769561738355	5.94921900936385	6.02823747729296	6.07149824300582	5.87238889969151	0.589460960702603	0.0191545214000974	0.124301389447788
Merged-chr6-112947351-4	chr6	112947237	112947437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080448)	promoter-TSS (NM_080448)	-71.0	NM_080448	259302.0	Mm.236401	NM_080448	ENSMUSG00000030257	Srgap3	AI452337|Arhgap14|D130026O08Rik|Gbi|MEGAP|WRP|mKIAA0411	SLIT-ROBO Rho GTPase activating protein 3	protein-coding	7.06393048268795	7.0659453136491	6.46766128406661	7.3266532286317	6.8970487291088	6.73585107253906	6.89550372668524	6.66884204339418	-0.314734206593078	0.188653213560504	0.487392366448519
Merged-chr18-46921770-2	chr18	46921676	46921876	+	704.666626	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_001033446)	promoter-TSS (NM_001033446)	-39.0	NM_001033446	381142.0	Mm.329423	NM_001033446	ENSMUSG00000073568	Arl14epl	Gm949	ADP-ribosylation factor-like 14 effector protein-like	protein-coding	2.92225000010498	3.023909646069	2.97636569978824	2.85259922912569	2.32858735584473	2.57367653409227	2.46214531073387	2.38804177199488	-3.3069295236056	0.000222845961768334	0.00397941613464832
Merged-chr11-85844785-3	chr11	85844690	85844890	+	912.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12175.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	4.16078852390725	4.10095718556976	4.16144153607503	3.80813583174782	3.68502593011143	4.37460031308999	4.05204781620166	4.06739483839094	0.0078449001224982	0.986308133184748	0.994960694613905
Merged-chr10-69352948-4	chr10	69352846	69353046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007659)	promoter-TSS (NM_007659)	-34.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	7.81240033683993	7.49044960833287	7.45350246728835	7.8319108624236	7.83062494677945	7.91414407753066	7.62596792617639	7.5531059668266	0.0981212243433711	0.60890376658242	0.830813576385782
Merged-chr11-29151747-4	chr11	29151665	29151865	+	979.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027869, intron 18 of 27)	ORR1D2|LTR|ERVL-MaLR	21014.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	6.09552274690674	6.2621515250198	5.59282120103238	5.55197614943083	5.92365403831821	5.77032857850137	5.77040122553691	5.27242350328479	-0.315756689390267	0.317808060431419	0.629680165162088
Merged-chr14-30761429-4	chr14	30761332	30761532	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166531, intron 2 of 21)	L2a|LINE|L2	45817.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	5.96250523585132	6.03005345079675	6.15413414062328	6.34818848774038	5.64855647211375	5.38021051841812	5.13312857614961	4.85576285792513	-1.39093920301036	9.46836994519809e-06	0.000262033088774982
Merged-chr7-72306522-3	chr7	72306463	72306663	+	889.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024703)	promoter-TSS (NM_001024703)	32.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	4.64748730563152	3.96597242301875	4.52451202507307	4.2247515356124	3.33962399759011	3.80113579407657	3.39150947525708	3.7355598489446	-2.33627916814754	1.30238021794596e-05	0.000350083540533141
Merged-chr19-47459092-4	chr19	47458973	47459173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	5338.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	6.65360286840429	6.58024391055298	6.62657807317726	6.62675878195901	5.63056818248808	6.09689349590256	6.09302103917407	5.91293175979457	-1.04977455145586	8.32769356484603e-06	0.000234013778228257
Merged-chr5-23121459-3	chr5	23121368	23121568	+	869.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029990, intron 2 of 2)	Charlie5|DNA|hAT-Charlie	312885.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	4.29427074611032	3.95076547789865	4.40807743013635	4.86880419590719	3.74278834268253	3.47947882360258	3.56421353032456	3.6408020802848	-2.32065115392268	1.2865965229585e-05	0.000346364046549405
Merged-chr6-38940804-2	chr6	38940704	38940904	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	21818.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	3.63208389515656	3.35117649135121	3.41084650036725	3.76102408054084	3.44897967597026	3.8007053582377	3.45702879562512	3.57861957970091	0.0427345154692808	0.933878626907327	0.976173680661379
Merged-chr5-23418376-7	chr5	23418311	23418511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	15942.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	6.2054836759024	6.17453256881166	6.58610013535411	6.01032677930238	6.15137333930367	5.8420083487191	6.07503353149857	6.29495739943586	-0.220084474552367	0.392794229276757	0.692149835264898
Merged-chr4-101213760-4	chr4	101213643	101213843	+	975.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 1 of 24)	MIR|SINE|MIR	51539.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	5.18493966441515	5.16607663715845	5.8064973754098	5.5669297184899	5.03906843400135	4.77187085732357	5.06087436665267	5.0470197902039	-0.877156181265505	0.00784210587208801	0.066263923804095
Merged-chr2-155692304-4	chr2	155692149	155692349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163452, exon 1 of 19)	exon (NM_001163452, exon 1 of 19)	135.0	NM_019828	56407.0	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	6.4397537904792	6.48719348768737	6.95678656432305	6.00821244844834	6.30196837072583	6.4144746779406	6.20660877163836	6.550374579483	-0.195508369770778	0.477046030502821	0.753297972427905
Merged-chr8-80753507-4	chr8	80753412	80753612	+	840.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14053.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	3.91612516202865	4.26117737450271	4.06511391090872	3.93060236720137	4.2255967386334	4.09045121572228	3.95168350283244	3.9144674738681	0.0333047968089683	0.938093916432487	0.977479276803853
Merged-chr6-22122207-3	chr6	22122135	22122335	+	717.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081351, intron 8 of 21)	intron (NM_001081351, intron 8 of 21)	136325.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	3.2324685415557	3.43162003242053	3.23288338696387	3.45978687277636	3.03124244415012	3.28443973567084	2.96985842315123	3.23120561875516	-0.845364350324673	0.136475199080491	0.410990361962696
Merged-chr19-3847633-4	chr19	3847538	3847738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4135.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	5.51314521284193	6.35478861619251	5.4217863604264	4.81451567597031	5.95736985790102	6.09341293951124	5.84408678527488	5.8701944277981	0.474827998616248	0.206795510383359	0.510809505458117
Merged-chr2-158794735-4	chr2	158794633	158794833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291144)	promoter-TSS (NM_001291144)	-74.0	NM_145742	71715.0	Mm.315652	NM_145742	ENSMUSG00000027655	Dhx35	1200009D07Rik|Ddx35	DEAH (Asp-Glu-Ala-His) box polypeptide 35	protein-coding	7.89099079427551	7.92976337745731	8.0249033825219	7.94979424430997	7.96796535227589	8.16884127256441	8.05089142455507	7.91609099072044	0.0995207318587658	0.532308564928877	0.788044784116818
Merged-chr7-24112255-3	chr7	24112176	24112376	+	877.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021307)	promoter-TSS (NM_021307)	-44.0	NM_021307	57745.0	Mm.82678	NM_021307	ENSMUSG00000052675	Zfp112	Znf112|Znf228	zinc finger protein 112	protein-coding	4.05126213873814	3.44528533108856	3.96910720733487	4.09176854446137	3.40500928178953	3.62800333941272	3.37146563050907	3.62519120435473	-1.27645341353983	0.0148938205145503	0.104291908549452
Merged-chr10-84209679-4	chr10	84209599	84209799	+	943.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-109002.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	4.45506039448354	3.84706163154507	3.99555720462069	4.6223317292327	3.92699028933326	4.06431879550579	4.50888226778963	4.63234355635539	0.0869933640659703	0.858408847713529	0.946576014812915
Merged-chr7-45563832-3	chr7	45563712	45563912	+	741.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025330, intron 6 of 8)	(TG)n|Simple_repeat|Simple_repeat	-6341.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	2.98469730278906	3.12588802751135	3.15554432062498	2.98435318683333	3.02444404221532	2.8944732005905	2.70982771522181	3.04286536475798	-0.570395203130551	0.351216903643289	0.658672265005478
Merged-chr9-47625920-7	chr9	47625769	47625969	+	890.119019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	95517.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	3.25370648804614	2.97961414117909	3.40111033417442	2.91934414069072	2.89243982273611	2.93555740076058	2.88800320111829	3.08615946983668	-0.808868577226716	0.190330633634111	0.489467980909667
Merged-chr1-180428527-2	chr1	180428427	180428627	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54977.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	4.99845246604832	4.77268744392642	4.78966802536036	4.79460746930423	4.68977382912137	5.16988947207895	4.56369022167038	4.9298575529062	0.0262756055334035	0.939622402665109	0.978240735005876
Merged-chr2-129314107-4	chr2	129314007	129314207	+	984.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-4135.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	5.48271000412493	5.29667970048235	4.91533223949509	5.39235606435296	5.44225824218297	5.13239644373784	5.10921706965908	5.096727497475	-0.148140835412285	0.639586384348577	0.847607151813091
Merged-chr9-95698009-2	chr9	95697909	95698109	+	995.5833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	52349.0	NM_001311123	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	3.03031033113211	3.14606819523585	2.96252288566813	2.64891364662658	3.16126443355904	3.59746315733445	3.31307180605965	3.21488456783278	1.49337178639331	0.013622266195737	0.0981396038002393
Merged-chr16-18626677-4	chr16	18626552	18626752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_213614, intron 2 of 11)	CpG	3286.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	6.01421300501059	6.15618484269596	5.74838986229457	6.01368049882264	5.49526039788002	5.42044076069046	5.7191963236169	5.6140889174464	-0.708228858682665	0.00689007794309408	0.0602093638384112
Merged-chr6-72758823-4	chr6	72758735	72758935	+	879.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	ORR1D2-int|LTR|ERVL-MaLR	30210.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	4.11076585493059	4.12947891672956	4.21188949980575	4.45070354104697	4.38183984588169	4.38708139600501	4.76227653634573	4.38952565265526	0.557866157642206	0.163720137561346	0.453511662183961
Merged-chr2-52895117-4	chr2	52895020	52895220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	37252.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	6.68342329479497	7.01110949325629	6.93053039034599	7.0319571258748	7.01130334981136	7.01199530393433	7.15461634951655	6.98964640588628	0.154259177082441	0.431152518045852	0.721486037975084
Merged-chr18-12949307-4	chr18	12949202	12949402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7461.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	6.80499466899392	6.75437378420623	7.16271854804953	6.81809517424731	6.85271523843126	6.60659119552023	6.91844570427163	7.13612917580969	0.00473038192408787	0.982659383874947	0.993825939075282
Merged-chr15-98662729-8	chr15	98662626	98662826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080981, intron 1 of 16)	CpG	163.0	NM_001080981	74351.0	Mm.45725	NM_001080981	ENSMUSG00000003360	Ddx23	3110082M05Rik|4921506D17Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	protein-coding	5.42250087603873	5.83135414022072	5.59290761809278	5.38881969204462	5.50900426517945	5.4420341571179	5.45500903551612	6.04809307291567	0.122919650293803	0.683552191373384	0.87039089396779
Merged-chr6-100110175-4	chr6	100110055	100110255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	177203.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	6.23820755100256	6.33263309025448	6.78429955278631	6.62218437833517	6.36256307026821	6.37594788931333	6.45975722659129	6.23485236097083	-0.232027014926994	0.321357011374048	0.633111551190032
Merged-chr12-3806465-4	chr12	3806379	3806579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271753)	promoter-TSS (NM_001271753)	-501.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	6.76070856891904	6.9558913532572	6.49539138674023	6.57773060736529	6.86583605249886	6.86548474026283	6.76895842585433	6.24095484279794	0.00920264658247357	0.969443967900356	0.989008244980025
Merged-chr2-25224225-2	chr2	25224125	25224325	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146116, exon 2 of 4)	exon (NM_146116, exon 2 of 4)	477.0	NM_146116	227613.0	Mm.227260	NM_146116	ENSMUSG00000036752	Tubb4b	4930542G03Rik|Tubb2c|Tubb2c1	tubulin, beta 4B class IVB	protein-coding	3.96527944552906	4.08290888725018	4.16948809923721	3.97493206243367	4.19166281032614	4.24779842736248	4.36533917877975	4.66631898105321	0.82264673987048	0.0416631201285577	0.206691644296975
Merged-chr17-5569786-4	chr17	5569706	5569906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	77206.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	6.09959366667938	5.51426304758803	5.68281879467018	5.78108424702936	5.79346921396205	5.95781999810912	5.72985606133572	5.82681004327829	0.0711675499399371	0.789557613369996	0.918515153062961
Merged-chr2-84633287-3	chr2	84633161	84633361	+	720.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	16219.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	3.17654715909111	3.17535018347469	3.17693066117568	3.27897300073068	3.37437310053987	3.2245790525578	3.38356330578867	3.11385107133739	0.277223307491153	0.606820299696317	0.829617829632128
Merged-chr2-164911622-8	chr2	164911510	164911710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_199027, exon 1 of 28)	5' UTR (NM_199027, exon 1 of 28)	140.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	5.15527896051796	5.78577524861735	5.19211050123171	5.02528522961934	5.61799853596728	5.81232512733702	5.39222852204622	6.10779263192252	0.743616836786634	0.0253485672376671	0.149944790776191
Merged-chr3-144700151-4	chr3	144700052	144700252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 6 of 10)	intron (NM_001282037, intron 6 of 10)	20183.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	6.21012676314215	6.43740239735845	6.3261055713436	6.36764337587698	6.3210633405334	6.1944373081032	6.54060300745986	6.35769040107459	0.0262076056522238	0.905840102756035	0.965033641268493
Merged-chr14-120367112-1	chr14	120367012	120367212	+	672.0	f0_balb.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	60660.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	2.91652298496791	2.65337645922106	2.80938382289389	2.85849087994364	2.42372198878505	2.44244182540146	2.33626793364367	2.56098395005205	-2.15660250099807	0.00508678444064578	0.0480967361451549
Merged-chr3-106546237-4	chr3	106546145	106546345	+	753.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293694, intron 1 of 8)	intron (NM_001293694, intron 1 of 8)	1380.0	NM_001357818	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	3.9242845104889	3.86223595783307	3.64477139453637	4.14811649043825	4.33603905354223	4.04645842850089	4.04999799167223	3.81773514407414	0.429615958554996	0.356118142627857	0.662704502355483
Merged-chr2-129570395-4	chr2	129570311	129570511	+	959.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-22428.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	4.04751364585659	4.8188611698503	5.31325518895112	4.19538870622543	5.19801962093036	5.16284185295326	5.17784480391074	5.08179566866161	0.910225693055665	0.0409856736152671	0.20473852637105
Merged-chr5-74092961-4	chr5	74092854	74093054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_145133)	promoter-TSS (NR_145133)	-106.0	NR_015531	70036.0	Mm.46547	NR_015531	ENSMUSG00000053656	Dancr	2700023E23Rik	differentiation antagonizing non-protein coding RNA	ncRNA	8.39799938940582	8.30580451947819	8.60867898578495	8.75331593829855	8.25408880458246	8.63418695694875	8.56019600472607	8.28892007233404	-0.116300193073307	0.523365409331051	0.782464816143387
Merged-chr10-86920807-4	chr10	86920705	86920905	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 30 of 68)	intron (NM_138673, intron 30 of 68)	87137.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	5.16011976156089	5.63751404828446	5.65611517083842	5.54582066444629	4.90738012288033	5.16008265134677	5.1687073809548	5.08841157772552	-0.808046986183368	0.00796957613193997	0.0670290038396969
Merged-chr18-64888394-2	chr18	64888289	64888489	+	819.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	CpG	633.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	3.39934684305054	3.48407896173779	3.97783755130853	3.49829111146543	3.52815841272416	3.31653158219561	3.50244204448131	3.62087703837235	-0.344248396747691	0.511897493036736	0.775668292015302
Merged-chr16-17759145-3	chr16	17759057	17759257	+	845.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145479)	promoter-TSS (NM_145479)	-464.0	NM_145479	224023.0	Mm.282807	NM_145479	ENSMUSG00000022750	Klhl22	2610318I18Rik|Kelchl	kelch-like 22	protein-coding	4.03918560425829	3.23341524593761	3.46233357208281	3.38916510580381	3.61405263016839	3.25941012830431	3.39191337563461	3.34293748456989	-0.491706666795367	0.39239689820638	0.691929317183568
Merged-chr4-133816383-3	chr4	133816314	133816514	+	872.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58317.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	3.74902233588334	3.55532406285368	3.48703076353541	3.69885605045377	3.29614825057903	3.76944774859632	3.28945389117287	3.79380112810573	-0.2387238648298	0.649980397134383	0.853021044216188
Merged-chr10-130228479-3	chr10	130228379	130228579	+	958.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17351.0	NM_146300	258297.0	Mm.377419	NM_146300	ENSMUSG00000045559	Olfr827	MOR210-5	olfactory receptor 827	protein-coding	3.85613472280689	4.00229038516412	4.09543400890778	4.23696684053899	3.75949728451776	3.74590537086539	4.07709304706186	3.8545078410657	-0.562299965831444	0.209392657612924	0.513940748725158
Merged-chr5-103715189-4	chr5	103715110	103715310	+	860.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-38952.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	3.98390286791013	3.82865353605463	3.56523031886273	3.73727955298776	4.53661587835261	4.34788373097786	4.2418659427729	4.33950109537093	1.53699950437526	0.000258865906474655	0.00449629486504624
Merged-chr16-18877873-6	chr16	18877759	18877959	+	925.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010435, intron 1 of 24)	intron (NM_010435, intron 1 of 24)	1109.0	NM_010435	15260.0	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|Tuple1	histone cell cycle regulator	protein-coding	4.30140512725182	4.29779746287593	4.38354213583303	4.36439651580964	3.90463806677633	4.09078910533551	4.05526275008787	4.25661990899916	-0.67219470132913	0.0953379986279917	0.337921652158971
Merged-chr10-115245696-1	chr10	115245596	115245796	+	555.0	f0_balb.idr	intron (NM_025706, intron 1 of 16)	intron (NM_025706, intron 1 of 16)	5797.0	NM_025706	66687.0	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	3.17159266550349	3.24973571591006	3.17199956108337	3.20140359973668	3.17425448598704	3.02469994025667	2.90961355901394	3.3325266448504	-0.300217318703873	0.599027610699898	0.826146116839364
Merged-chr8-106972036-4	chr8	106971929	106972129	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	36279.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	4.89786534793972	4.86955188785776	5.00490279416821	4.81999949849309	4.92108938002207	5.55234802197545	4.83809699136632	4.89539542813302	0.360044937310237	0.296527250100282	0.608507761092495
Merged-chr17-88462892-4	chr17	88462812	88463012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001355743, exon 2 of 5)	exon (NM_001355743, exon 2 of 5)	22208.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	7.5273399445131	7.33453079195161	7.4100342690494	7.68934246339651	7.00611916778422	7.11756222292009	7.3246040855226	6.94828400233035	-0.541812732692609	0.0057510628800729	0.0526840289241582
Merged-chr5-143113063-4	chr5	143112935	143113135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207110)	promoter-TSS (NM_207110)	-15.0	NM_001359851	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	6.939981111169	7.06253065717466	6.45390642283398	6.5223838129685	7.11435628461324	7.32168286708391	7.19470384579979	7.15134521895652	0.597993705358388	0.00712971734346465	0.0617680319852082
Merged-chr7-30309476-3	chr7	30309373	30309573	+	727.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198027, intron 1 of 6)	intron (NM_198027, intron 1 of 6)	720.0	NM_198027	233065.0	Mm.276277	NM_198027	ENSMUSG00000042831	Alkbh6	AI839550|Abh6|C130099A02	alkB homolog 6	protein-coding	4.15652858199679	3.40235781454681	3.46536886094277	3.63925976252589	3.69811345973534	3.5821330278615	3.39122930999548	3.73775653329109	-0.26458540503578	0.621305175179557	0.837757076551181
Merged-chr2-66144059-4	chr2	66143978	66144178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19285.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	5.88655773811717	5.9908239952488	6.20060732509082	6.42686615418949	5.99046106891616	5.80484454037368	5.68121237746156	6.01798136374913	-0.430821054590552	0.103646003423281	0.353765171078245
Merged-chr2-58156015-14	chr2	58155913	58156113	+	914.630981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139200, intron 1 of 7)	(T)n|Simple_repeat|Simple_repeat	4109.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	3.60987933488861	3.48037860914435	3.66484009222964	3.62062261766131	3.69706012410079	3.72846162603477	3.48158303458143	4.10726426770172	0.533656224533987	0.27399057197376	0.585727262209282
Merged-chr15-96466676-4	chr15	96466565	96466765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-5822.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	6.60889205640533	6.94347229894486	6.70856750905766	6.79079658603595	5.79045564749912	6.00516311750882	5.87202438816611	5.76367176544739	-1.38736830839931	1.44828429504873e-09	9.05069603487916e-08
Merged-chr5-122732658-4	chr5	122732534	122732734	+	941.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145358, exon 16 of 16)	3' UTR (NM_145358, exon 16 of 16)	25090.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	4.58868905323734	5.09337895054658	4.73283157833821	4.98121693348786	4.20068015653692	3.83257527257351	3.89380669282157	3.96810640366213	-2.11745578683395	1.55999258449526e-06	5.24262097128365e-05
Merged-chr3-68794605-3	chr3	68794525	68794725	+	890.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33130.0	NR_153374	102639225.0	Mm.109095	NR_153374	ENSMUSG00000102936	Gm35584	-	predicted gene, 35584	ncRNA	4.13715311382039	4.22448891347197	4.2674087989544	4.40694633067557	3.70662982134382	3.89430843454956	3.69825728783896	4.34407024119691	-0.885094311012175	0.0541751076443229	0.243054721602036
Merged-chr14-78678080-1	chr14	78677980	78678180	+	711.0	f0_balb.idr	intron (NM_001081336, intron 2 of 29)	HAL1|LINE|L1	-33629.0	NR_104044	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	3.26020080474076	3.27096049130549	3.14811200134859	3.72724444830991	2.78921133087276	2.76332331533318	3.13622100492721	2.88795325783155	-2.06505606964584	0.00228857858709306	0.025959957808876
Merged-chr13-91517161-4	chr13	91517077	91517277	+	932.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 1 of 15)	ORR1D2|LTR|ERVL-MaLR	56080.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	5.98217923678371	5.72797951164724	6.32827179726027	5.94173126149107	4.9762937169473	4.97641936757662	5.09534967894043	4.52311300809014	-1.94918134765241	2.66559129904994e-09	1.58375728777192e-07
Merged-chr2-73459911-4	chr2	73459853	73460053	+	854.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-6064.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	3.75027725775118	4.31688830014504	4.18222613252815	3.19447562364204	4.13625168781727	4.03617031229481	3.94269938321706	3.50107338698015	-0.0367854619571655	0.949188476780175	0.981724594430923
Merged-chr7-45556010-3	chr7	45555910	45556110	+	901.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025330, intron 1 of 8)	intron (NM_025330, intron 1 of 8)	1082.0	NM_025330	66065.0	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	3.84444622164699	3.64662035913013	3.52236208087564	3.33084615596883	3.9189110082874	3.70029874662982	3.78023029213467	3.97773020808388	0.806459627983718	0.0942920673859731	0.335950298551716
Merged-chr13-91728076-4	chr13	91727978	91728178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028314, intron 1 of 1)	L1MC4a|LINE|L1	-13443.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	5.17690459509174	5.62081296948794	5.55022053581114	5.67102881783214	5.71096583587584	5.52283391065788	5.62493555361071	5.51914145677554	0.118021050830274	0.674040566756308	0.865983965214928
Merged-chr9-120866899-1	chr9	120866799	120866999	+	1000.0	f0_balb.idr	Intergenic	Intergenic	48351.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	3.21252955389815	2.7361774598747	2.89439188547741	3.45369566774867	2.40430371385733	2.57962338957774	2.54643310139612	2.55185541895704	-3.54917932807789	0.000101427675921879	0.00205508697536107
Merged-chr2-33131916-4	chr2	33131857	33132057	+	921.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355201)	promoter-TSS (NM_001355201)	-521.0	NM_001355201	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	4.00055378035804	4.24300600035724	4.00113586942616	4.0064894137311	4.05899129296066	4.02161007256609	4.03115339904191	3.79107921888047	-0.223175291684045	0.600252811154042	0.826760171717672
Merged-chr7-31008363-4	chr7	31008264	31008464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26443.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	6.58735590098213	6.27628867319922	6.53973869339008	7.05298783312512	6.38484449171848	6.50143995875794	6.92334536641163	6.67597744389797	-0.0408363417379827	0.876192807379498	0.953442007069344
Merged-chr7-43378413-4	chr7	43378316	43378516	+	967.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27075.0	NM_145581	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	4.62293786436728	4.78606335399376	4.70438918433404	4.62607969459431	4.91513078984276	4.91559879103432	4.95950117977588	4.48955397036461	0.319682710673458	0.351368454175802	0.658808615509455
Merged-chr6-122654568-4	chr6	122654458	122654658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	28134.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	8.33556402813105	8.7262940242419	8.56395305889389	8.19515847157484	8.43998822643652	8.53102140795507	8.30358077784549	8.39612803484913	-0.0597044019721716	0.737627505103038	0.896392006995728
Merged-chr11-86201726-2	chr11	86201626	86201826	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178309)	promoter-TSS (NM_178309)	366.0	NR_130958	74038.0	Mm.171304	NR_130958	ENSMUSG00000085208	Brip1os	4632419I22Rik	BRCA1 interacting protein C-terminal helicase 1, opposite strand	ncRNA	3.86191384548969	3.70891582742678	3.5449572321928	3.8184258371274	3.86525317128389	3.39448715583555	3.89123036180839	3.86015385324944	0.0885166779119984	0.855703162506793	0.945737752088283
Merged-chr1-23975296-4	chr1	23975207	23975407	+	854.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	30333.0	NM_026503	68002.0	Mm.250424	NM_026503	ENSMUSG00000026154	Sdhaf4	1110058L19Rik|1700001E18Rik|C6orf57	succinate dehydrogenase complex assembly factor 4	protein-coding	3.12960365948086	3.6407500006209	3.64267420176697	3.57522569889504	3.91339013615597	3.81372238736702	3.67948064927605	3.74273075694485	0.840231869688166	0.10077081713313	0.34847075902849
Merged-chr10-118370646-4	chr10	118370543	118370743	+	970.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70403.0	NM_008337	15978.0	Mm.240327	NM_008337	ENSMUSG00000055170	Ifng	IFN-g|Ifg	interferon gamma	protein-coding	5.5133306688206	5.13039225048457	4.90381212038975	5.14058045231119	5.641052303002	5.08477028675745	5.60686261275647	5.34733611846298	0.469618474326144	0.140902748448529	0.417494563733161
Merged-chr2-130496384-3	chr2	130496325	130496525	+	896.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	46147.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	3.99203458599778	3.9842795264434	4.03312356486731	4.16391461932573	3.04044890777354	3.19729439324054	3.14965766981269	3.2317892655223	-3.62637359369066	6.08333846545459e-08	2.72502170316295e-06
Merged-chr4-88805974-3	chr4	88805884	88806084	+	735.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243155).3	promoter-TSS (NM_001243155).3	-42.0	NM_001243165	545647.0	Mm.380019	NM_001243165	ENSMUSG00000096582	Gm13289	-	predicted gene 13289	protein-coding	2.75524159628169	2.68371570163518	2.7555037460692	2.30731179561277	3.86376218332137	3.33713162702782	4.07104620277048	3.87150746456863	6.81818523321841	3.08835712325642e-14	4.44093276113674e-12
Merged-chr10-16658709-3	chr10	16658613	16658813	+	857.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	437069.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	2.53822355372014	2.5551892512998	2.53842950763144	2.36262565036929	3.26353062013936	3.33342099184805	3.52110676000471	3.10017405347034	4.20325367241074	2.30510096109211e-08	1.13625194812725e-06
Merged-chr10-19999921-4	chr10	19999791	19999991	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	C-rich|Low_complexity|Low_complexity	65365.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	5.06949648051606	5.15143490605382	4.86200611388261	4.86132226623927	5.19727144368953	5.03670415243342	4.83906138789172	4.78116483162938	-0.00235424559092297	0.994296870687228	0.997928045102174
Merged-chr7-44072319-3	chr7	44072218	44072418	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20028.0	NM_020268	16619.0	Mm.445911	NM_020268	ENSMUSG00000063177	Klk1b27	Gk27|Klk21l|Klk27|mGK-27	kallikrein 1-related peptidase b27	protein-coding	3.11172828697754	3.04603477855185	3.22065675500916	3.42842051883175	2.51104869370542	2.66477929478423	3.09968274252012	2.92873627496961	-1.7685291461483	0.0172993608796416	0.116038693818139
Merged-chr1-156468692-6	chr1	156468563	156468763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 1 of 15)	(CA)n|Simple_repeat|Simple_repeat	5665.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	4.60088687903714	4.9320077167879	5.10608528141275	5.27571389059971	4.91691607493312	4.91574608654448	5.14309438940923	5.46238189602375	0.206103048326273	0.563293204886745	0.806221125771298
Merged-chr15-82046412-2	chr15	82046312	82046512	+	813.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_011482, intron 1 of 2)	ID_B1|SINE|B4	1186.0	NM_011482	20826.0	Mm.299312	NM_011482	ENSMUSG00000063480	Snu13	FA-1|Fta1|Nhp2l1|Ssfa1	SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)	protein-coding	2.75033237826911	2.83710127187927	2.68083685946664	2.65892717808689	3.01648163050786	3.04982466927991	2.92908655664776	2.9387642498991	1.15664876587938	0.0537112304465081	0.241923158384611
Merged-chr6-113700923-2	chr6	113700823	113701023	+	979.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347356, intron 2 of 7)	intron (NM_001347356, intron 2 of 7)	3873.0	NM_001033463	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	3.43212015410285	3.30465808197401	3.32097799982979	3.13950528445789	3.34262287661262	3.43467428822698	3.51997809303984	3.31924288200251	0.401130937110596	0.4393879532512	0.727262466851157
Merged-chr11-49253249-3	chr11	49253161	49253361	+	975.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110148, intron 3 of 3)	MLT1G3|LTR|ERVL-MaLR	2709.0	NM_001110150	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	4.0217477093588	3.63587703661502	4.02236455595255	4.38829936260623	3.60548087528875	3.71378403752414	3.9587731075366	3.92568448775036	-0.70533940054262	0.151663759680475	0.435394344360064
Merged-chr9-64013737-3	chr9	64013616	64013816	+	847.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 1 of 3)	intron (NM_008542, intron 1 of 3)	8343.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	3.7854942570383	3.54890439045055	3.78601982935982	4.09260510849573	3.85903544040094	3.6080825765113	3.96386071260922	4.14787414067487	0.215831971424914	0.658991710893968	0.858075830194168
Merged-chr12-26444190-3	chr12	26444079	26444279	+	995.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021384, exon 6 of 6)	3' UTR (NM_021384, exon 6 of 6)	12273.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	4.50708966547691	4.33717693375307	4.04476351120376	4.25875176356138	3.96525617744093	4.16961918571216	4.33791356308829	3.69788257535345	-0.595857019749381	0.18013055219678	0.476476660442342
Merged-chr4-105248209-7	chr4	105248112	105248312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90865.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	5.61955949699521	6.16978611086725	6.23403900595499	5.50123385494458	6.03633318648577	6.15089124273875	5.9445625801437	6.26499984337944	0.304801699155125	0.290307556928354	0.602462038492102
Merged-chr15-97993100-4	chr15	97992996	97993196	+	972.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113515, intron 15 of 52)	intron (NM_001113515, intron 15 of 52)	11628.0	NM_031163	12824.0	Mm.2423	NM_031163	ENSMUSG00000022483	Col2a1	Col2|Col2a|Col2a-1|Del1|Dmm|Lpk|Rgsc856	collagen, type II, alpha 1	protein-coding	5.04329964379732	5.40607845553689	5.24191806452209	5.25703889489801	4.80468947141637	5.18516029057905	4.94711427340661	5.65023016579511	-0.118737752607507	0.730277378014503	0.893000516342052
Merged-chr16-23233606-4	chr16	23233479	23233679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	7558.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	6.6067312330554	6.14019339519376	6.49669839332624	6.8275116758495	6.27706857274638	6.39690674419137	6.55891617124665	6.58789599030621	-0.142998011535264	0.561451566069228	0.80494560024742
Merged-chr12-51377427-4	chr12	51377327	51377527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029825)	promoter-TSS (NM_029825)	-86.0	NM_001306178	76983.0	Mm.216511	NM_029825	ENSMUSG00000020952	Scfd1	3110021P21Rik|RA410|STXBP1L2	Sec1 family domain containing 1	protein-coding	7.93217079961998	8.06140669139591	8.06183721072918	8.3282621375595	7.81128698642804	7.76988465341748	7.93721214838269	7.92102645798019	-0.326453911690337	0.0584332866385588	0.254122497076189
Merged-chr19-5510639-4	chr19	5510548	5510748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024560)	promoter-TSS (NM_001024560)	-131.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	7.98303881774633	8.17122284537318	7.64895076960339	8.04730196866198	8.08044686375491	8.18225120793732	7.99295950986963	7.78720478487673	0.0486541450422919	0.79437778751009	0.920533997414362
Merged-chr1-166360360-4	chr1	166360264	166360464	+	973.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18803.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	5.22406433019147	4.86598571916151	5.12793782375624	5.51906383758821	5.38703287756441	5.08754917665432	5.49972333531004	5.05550968018498	0.0968689614445114	0.771407553706669	0.910379161490028
Merged-chr3-54735476-4	chr3	54735372	54735572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025442)	promoter-TSS (NM_025442)	-67.0	NM_025442	66248.0	Mm.144218	NM_025442	ENSMUSG00000036632	Alg5	1500026A19Rik|2600005J22Rik|AV009521|AV170001|AW545564	asparagine-linked glycosylation 5 (dolichyl-phosphate beta-glucosyltransferase)	protein-coding	7.93250811476178	7.97698234437376	7.37076449964906	7.80708194139295	7.84246150527667	8.20532839901567	8.04617088887371	7.69114487918282	0.211520659361927	0.304675797211306	0.617216489347209
Merged-chr12-108635709-4	chr12	108635608	108635808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163396)	promoter-TSS (NM_001163396)	-45.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	5.53688557849028	5.42874732462359	5.79223728900411	5.83238739869021	5.51904081741319	5.29058847892667	5.64265778707805	6.1455973842059	0.0371905069498513	0.904451587966635	0.964559678221358
Merged-chr9-44567827-4	chr9	44567710	44567910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37082.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	7.15444300294283	7.32250444077709	7.00515146720764	7.05837127603086	7.40098582999053	7.69893225868468	7.70231136062066	7.34715388927737	0.54343624060844	0.00512658787015432	0.0483831076650377
Merged-chr16-4907628-4	chr16	4907524	4907724	+	904.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 2 of 17)	intron (NM_001357062, intron 2 of 17)	21524.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	4.54623639476312	4.2401935544645	4.58567024235623	4.41392698579782	4.40501506482278	4.50850222943391	4.56411052396683	4.5440088441216	0.12788183775114	0.726796826639899	0.891273682846738
Merged-chr3-105895435-4	chr3	105895341	105895541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-8980.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	7.29319120276511	6.91797410556971	6.51146121178275	6.63363065851463	6.91503249530078	7.11409978206185	6.9772629210002	6.94547854447802	0.168622087390145	0.472298158821918	0.750462332502573
Merged-chr11-100408263-3	chr11	100408145	100408345	+	720.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_176830)	TTS (NM_176830)	6574.0	NM_176830	66180.0	Mm.4940	NM_176830	ENSMUSG00000006931	P3h4	1110036O03Rik|AI413214|Leprel4|Sc65	prolyl 3-hydroxylase family member 4 (non-enzymatic)	protein-coding	3.28467460201898	3.22653993410754	3.08040587569825	2.92490152410498	3.42842087280287	4.0107961532466	3.69759809039529	3.46126502225191	1.88809621147721	0.000598270491687985	0.00891630974201404
Merged-chr4-41774200-2	chr4	41774088	41774288	+	1000.0	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_001347065)	promoter-TSS (NM_001347065)	-12.0	NM_001048179	20301.0	Mm.335946	NM_011336	ENSMUSG00000073888	Ccl27a	ALP|AW558992|CTACK|CTAK|Ccl27|ESkine|ILC|PESKY|Scya27|Scya27a	chemokine (C-C motif) ligand 27A	protein-coding	3.51051534677535	3.37818740717216	3.51099565249339	2.43985462205072	5.85149373487097	5.37864844318063	5.6918959285995	5.19388544376813	9.31391017765105	2.32141580655448e-23	1.23310489324434e-20
Merged-chr19-31764447-3	chr19	31764360	31764560	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013833, intron 1 of 17)	CpG	573.0	NM_001013833	19091.0	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding	4.75292674464041	4.53763732849124	4.28962735051489	4.7800947815399	4.2018561117556	4.26834153996646	4.01723528759344	4.37699340463415	-0.928597886731591	0.0202347347542741	0.129058081099863
Merged-chr7-44553962-4	chr7	44553858	44554058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285519)	promoter-TSS (NM_001285519)	7.0	NM_009473	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	6.93072891042841	6.9566381786089	6.66968973736852	6.78276943436605	7.26384973505276	7.13463485625599	7.13467901666004	6.99109220392843	0.417949194769683	0.0317082405034386	0.173672090927339
Merged-chr3-61416109-4	chr3	61416009	61416209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51602.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	7.53296272062311	7.89092609151599	7.9515477162446	7.67605531917011	7.95629909586334	7.83613483786396	7.31708110990871	7.47170766542201	-0.123852926024145	0.559680878247781	0.803986382094829
Merged-chr14-76152695-4	chr14	76152591	76152791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41800.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	6.84125011714365	7.24087267428256	6.77013556550701	6.9104201651771	7.2319272825383	7.06079515140958	7.00300619402349	6.95868043774955	0.162744610227804	0.432133388500274	0.722198138555674
Merged-chr11-3288687-3	chr11	3288620	3288820	+	694.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045109)	promoter-TSS (NR_045109)	-411.0	NR_045108	56218.0	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	3.79167550505235	3.92330484556766	3.42282382630983	3.37925125737941	3.49059747562323	3.53863339031944	3.34897257709859	3.69488058259741	-0.390033733527195	0.460114788472559	0.742423107217561
Merged-chr5-72195635-4	chr5	72195538	72195738	+	986.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-7691.0	NR_003966	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	5.01502849734036	5.13224421959532	5.14986131145004	5.30069718553886	5.25430572935762	5.0035921470931	4.99198200043892	5.20832658129291	-0.0730995056504303	0.811484716240149	0.927067536138303
Merged-chr6-121343325-4	chr6	121343300	121343500	+	883.337524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347433, intron 1 of 14)	intron (NM_001347433, intron 1 of 14)	324.0	NM_001347433	14411.0	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	3.40578367188341	3.69684605405654	3.70092911258916	3.68274603468435	3.87729415443489	3.76459723061091	3.92309816216321	3.75052219362356	0.596052324620158	0.198085137210208	0.499574885075483
Merged-chr10-68268857-3	chr10	68268775	68268975	+	813.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	9851.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	3.69489569677511	3.58735762303601	3.48986140360634	3.27276494259968	3.38341219989015	3.48803450612203	3.63142127864037	3.48795707699146	-0.0375519640929382	0.941472942039782	0.978922922650201
Merged-chr10-98716343-3	chr10	98716237	98716437	+	867.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-198305.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	3.27674700084467	3.10983336639996	3.22026248830521	3.72235563344039	2.90145204383327	3.14238237425738	3.20824419852635	3.15915222982025	-1.01365411509247	0.095783821299544	0.338959140600361
Merged-chr14-103186851-4	chr14	103186754	103186954	+	938.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207215, intron 49 of 84)	Lx6|LINE|L1	-87288.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	4.65355764696414	4.37892552178023	4.88277355138726	5.13071506660007	4.75345547716751	5.01971283005853	4.95877322366591	4.69226549619277	0.100195293369016	0.790238336445006	0.918828686312538
Merged-chr6-87184057-4	chr6	87183952	87184152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054041, intron 16 of 17)	intron (NM_054041, intron 16 of 17)	79306.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	6.18109115998245	6.0945156013729	5.52601829614503	5.43881182511154	6.06259179036773	6.09409154819798	5.91078217346477	5.91462391252621	0.254928434132679	0.382902681207898	0.684806264846199
Merged-chr2-52424407-4	chr2	52424287	52424487	+	955.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182994, intron 1 of 5)	CpG	487.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	4.45078437655982	4.22663457999941	4.49128300079326	4.28453815872547	4.45881211917219	4.20380814205398	4.34827372628962	4.59989626117647	0.130965118199184	0.731504414438458	0.893667554285139
Merged-chr19-45032743-4	chr19	45032632	45032832	+	866.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195265, intron 10 of 15)	intron (NM_001195265, intron 10 of 15)	13040.0	NM_001195265	100503041.0	Mm.329877	NM_177605	ENSMUSG00000074818	Pdzd7	9130207N01|EG435601|Pdzk7	PDZ domain containing 7	protein-coding	3.97084172317643	3.96980469962415	3.82242364071281	3.80367158318948	3.94145847377205	4.04529135480588	3.69877712268906	3.96903319542598	0.0877447599771467	0.841144495164536	0.939525416908854
Merged-chr18-66437999-4	chr18	66437912	66438112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20592.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	7.63869703050249	7.67027925922654	7.29302654941386	7.43627935393938	7.72602891808111	7.64621100925465	7.73766111985992	7.6092573141572	0.219316999081931	0.218000366680805	0.524940535745813
Merged-chr16-20382164-4	chr16	20382081	20382281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013790, intron 12 of 29)	intron (NM_013790, intron 12 of 29)	44213.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	5.98537164284661	6.35613074408261	6.86517316031806	6.68583131592091	6.39011510461821	5.98799984764997	6.30730840075726	6.07448614791618	-0.467031194681561	0.0881468008949814	0.323918465547202
Merged-chr13-104863538-2	chr13	104863465	104863665	+	642.0	f0_balb.idr|f1_balb.idr	exon (NM_029984, exon 1 of 3)	exon (NM_029984, exon 1 of 3)	328.0	NM_029984	77803.0	Mm.159995	NM_029984	ENSMUSG00000042655	Fam159b	A930021C24Rik|Shisal2b	family with sequence similarity 159, member B	protein-coding	3.13404273778674	2.97517006177717	3.13444787886151	3.34993047971123	2.86384921494227	2.91231417458981	3.17879743358649	3.29597490180071	-0.358894910594215	0.55450311283347	0.800831430828316
Merged-chr4-83266151-4	chr4	83266051	83266251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 3 of 19)	intron (NM_027238, intron 3 of 19)	58038.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	7.03887622200001	6.89840673518527	6.69089562270087	7.02136468808768	7.16797509916827	6.68646283404959	7.07268409041889	6.1795750540934	-0.113073268766154	0.666526034800465	0.862029519424781
Merged-chr1-39614601-4	chr1	39614502	39614702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36580.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	5.08083710585673	5.27479759608794	5.2176003754757	5.21345144866647	5.56832053867328	5.29251735501875	5.50464884033301	5.55337878892244	0.517387333788012	0.0656624538262106	0.272810401639963
Merged-chr6-99540830-4	chr6	99540728	99540928	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19835.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	5.11261816122992	5.23326384759642	5.46180740525542	5.40770587082128	5.3010449756632	5.32774551461502	5.94588981569107	5.51215521718998	0.399368085536196	0.197157825165095	0.498437110190953
Merged-chr6-122657913-4	chr6	122657800	122658000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31476.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	8.14223605587333	8.1274472126574	8.0936226256531	8.13147552577808	7.95607672038156	8.05620667035814	8.02945436676138	8.17433435031208	-0.09120321979164	0.554531058379747	0.800855541216816
Merged-chr19-6335376-2	chr19	6335276	6335476	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001168490, exon 1 of 8)	5' UTR (NM_001168490, exon 1 of 8)	337.0	NM_008583	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	3.15934718272272	3.04269943679826	3.32075990854086	2.82821599551529	2.73904109455059	3.21447859693768	3.02909165942533	3.15800684318671	-0.201942394346978	0.74668422367607	0.90024329344347
Merged-chr18-60787200-4	chr18	60787105	60787305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12609.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	5.41504939911534	5.52878109587365	5.35414001090378	5.35465041876015	5.70794199193746	5.46750138128759	5.83799848744549	5.88476028340164	0.550845487557931	0.0407692927710302	0.204130380567611
Merged-chr6-120364744-3	chr6	120364614	120364814	+	891.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045558)	promoter-TSS (NR_045558)	-345.0	NR_045558	67200.0	Mm.45767	NM_026028	ENSMUSG00000030177	Ccdc77	2400002C23Rik|2700091N06Rik|AV168274	coiled-coil domain containing 77	protein-coding	3.41298413916211	3.55614948278335	3.645040022186	3.55533354706271	3.75511441006175	3.91507670046204	3.68172551121118	3.64299066340459	0.635509070944769	0.175406073151642	0.470111788570704
Merged-chr3-40894139-4	chr3	40894039	40894239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026622)	promoter-TSS (NM_026622)	-138.0	NM_026622	269423.0	Mm.32373	NM_026622	ENSMUSG00000037818	Abhd18	2310068E01Rik|3110057O12Rik|AI645591	abhydrolase domain containing 18	protein-coding	8.73322816438295	8.84137424220183	8.82855856123152	8.47185732963367	8.82332017796983	8.96254690631817	9.13908915854569	8.51178719984781	0.19457407806736	0.293686512333554	0.606149081959282
Merged-chr9-24505250-4	chr9	24505176	24505376	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2136.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	5.24160870703496	4.91257658099787	5.38979662208387	4.94370198730554	5.26692526660245	5.25304548441972	5.61188158231714	5.44035815796892	0.50824309827313	0.100959521304578	0.348744146510806
Merged-chr13-78199274-3	chr13	78199178	78199378	+	874.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010151)	promoter-TSS (NM_010151)	-405.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	4.08150711088442	4.09434968297461	3.84287159450609	4.06831508050273	3.74686842116933	3.79331558958526	4.10619975368492	3.73124859092218	-0.498525524473246	0.26407769763295	0.57619969467892
Merged-chr10-75635846-4	chr10	75635745	75635945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001162913)	TTS (NM_001162913)	8163.0	NM_001162913	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	5.52246470923555	5.53649968988379	5.46836350098345	5.506135563856	5.76102185461291	5.32924585338823	5.35438381870988	5.43612158522635	-0.0176224168394771	0.950076999870063	0.98220432130175
Merged-chr7-29523862-3	chr7	29523771	29523971	+	950.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18411.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	4.4801496280932	4.25018587990896	4.2354937064052	4.29334743533524	4.00809288536511	4.3158801902168	3.97186517729928	4.36133780915941	-0.366832194049281	0.367403015069744	0.671840185218993
Merged-chr1-136640122-3	chr1	136640020	136640220	+	880.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15219.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	4.03675059949102	3.9217001720898	3.88209713710729	4.27313151701045	3.94198518892605	4.11113409424999	3.91995022090781	4.51535028673197	0.233604721130368	0.607214627350581	0.829834769802161
Merged-chr15-12197002-4	chr15	12196912	12197112	+	929.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8016.0	NM_001356498	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	4.42891599805327	4.64371174510848	4.50857017093876	4.40770173126299	4.65425626026325	3.94017294145456	4.18979142580828	3.99632102094289	-0.593775284998247	0.176321717725351	0.471307205534908
Merged-chr11-103264683-3	chr11	103264605	103264805	+	956.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	2696.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	3.44685162229789	3.67500017182706	4.00327175810567	3.80233480968158	3.59797008226637	3.68451161541688	3.55448922177026	3.77772080012853	-0.29037768515445	0.55143591388238	0.79892812604468
Merged-chr1-78895954-4	chr1	78895879	78896079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151519, intron 3 of 3)	MTC|LTR|ERVL-MaLR	79068.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	6.56545189333353	6.92606276227549	7.04067646389153	7.23596232275037	6.80183447655689	6.50436471471817	6.76346599758583	6.62786617838118	-0.412974862413952	0.0713462434692397	0.2866859130573
Merged-chr1-86214390-4	chr1	86214262	86214462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	59582.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	6.89436125453307	7.14814459420138	6.89557067770333	7.2563065769048	6.36329974105996	6.5408949305321	6.97361175133874	6.80891621706862	-0.536488719381394	0.0201327766813773	0.128626775998901
Merged-chr2-113469715-4	chr2	113469621	113469821	+	797.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	28657.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	3.45740187389972	3.34398658710481	3.9128230954989	3.70976051464755	3.85622448801291	3.51075278942575	3.85201705282119	3.32941452604723	0.110210930120269	0.837945252511742	0.938474063450959
Merged-chr13-101763217-6	chr13	101763149	101763349	+	775.680542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	4968.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	3.75906260425806	3.61641895217125	3.94841591706408	3.54874745751732	3.92935460156601	3.52716057137984	3.74403542490307	3.80724485286294	0.15411477328098	0.747836575241957	0.900696451532974
Merged-chr10-21995792-10	chr10	21995721	21995921	+	896.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001161850, exon 4 of 12)	exon (NM_001161850, exon 4 of 12)	1155.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	3.94570034165325	3.87636262860055	4.1683409707065	4.08960770020059	3.80651159940484	3.73421451646497	3.97669123053737	3.89453500952086	-0.482720249111162	0.270618487890062	0.58243909949623
Merged-chr17-45746968-4	chr17	45746864	45747064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 1 of 4)	intron (NR_152153, intron 1 of 4)	12458.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	6.6712610144478	6.21777267406511	7.24653774538869	6.38231849698807	6.82342677670141	6.54314638867981	6.92121278046721	6.68275510867528	0.0997962850801057	0.717764397232324	0.887175092131897
Merged-chr17-86145046-7	chr17	86144892	86145092	+	953.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030133, intron 1 of 20)	CpG	183.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	4.58684427641409	4.46028641141816	4.83342922647309	4.52244104266753	4.52535730788581	4.55023791348899	4.26357948315202	4.62309783600053	-0.232027491826993	0.52991308039173	0.786035159196494
Merged-chr8-80272695-3	chr8	80272607	80272807	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-214699.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	3.35848756444183	3.4588013707569	4.07696916145726	3.93508965524997	3.32574206333159	3.47411085843304	3.46802851070866	3.47930452604777	-1.00903836102266	0.0645090658589177	0.269956540582744
Merged-chr1-191075441-5	chr1	191075295	191075495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 4 of 5)	HAL1|LINE|L1	12374.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	7.47197329340242	8.05663929651487	7.17887634628576	6.92006114995352	7.79385972569365	8.10208127138723	7.13087535949699	6.75706074491409	0.0939417759662186	0.852918238492798	0.944672349828292
Merged-chr5-35103283-4	chr5	35103179	35103379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013587, intron 1 of 7)	intron (NM_013587, intron 1 of 7)	2418.0	NM_013587	16976.0	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	6.52730239617759	6.68275395527229	6.35302385772076	6.51626541604315	6.6918883136559	6.23753747184686	6.84765376887817	6.40368188570284	0.0695163012517061	0.766904027066618	0.908761099796477
Merged-chr9-90126454-4	chr9	90126352	90126552	+	946.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11632.0	NM_024431	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	4.76785410541219	4.37821523206023	4.76863790636042	4.72826053166699	4.80574005930606	5.04518073586172	4.74596406012156	4.60871344817002	0.287498353629459	0.413967326260628	0.708838812152508
Merged-chr2-34754316-4	chr2	34754213	34754413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151469, exon 2 of 27)	non-coding (NR_151469, exon 2 of 27)	919.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	6.22569461841071	6.52538196284545	6.31730415941764	5.68434580133563	6.15368312690358	6.34463826780091	5.69813638293075	5.99700174480297	-0.22064517852077	0.455032477996032	0.738746012503745
Merged-chr7-46963447-4	chr7	46963347	46963547	+	982.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4929.0	NM_001040695	54122.0	Mm.1999	NM_016855	ENSMUSG00000043262	Uevld	8430408E05Rik|Attp	UEV and lactate/malate dehyrogenase domains	protein-coding	5.1398500684163	4.87714640775645	4.60497743673746	5.082976143263	5.02289028202057	5.2496520210347	5.0839284129652	5.33883209313694	0.421790700214432	0.198846907838106	0.500526867107314
Merged-chr15-38661888-4	chr15	38661799	38661999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025494)	promoter-TSS (NM_025494)	-5.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	7.96156840197028	8.02631361403888	7.8067365133797	7.76714999482739	8.22181611648014	8.24114446599549	8.05686475679983	8.0255425674344	0.323308371888671	0.0512799887012939	0.235071458928189
Merged-chr2-103934873-4	chr2	103934779	103934979	+	774.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23116.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	3.70952846957073	3.78627193338332	3.76178221912592	3.68518012346457	3.97383987447183	3.88091495665615	3.69518459098007	3.41389101331376	0.0959197373427714	0.841682771183915	0.93989956182206
Merged-chr18-56622462-4	chr18	56622379	56622579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34131.0	NM_026099	67343.0	Mm.87057	NM_026099	ENSMUSG00000032900	Tex43	1700065I17Rik|Tseg7	testis expressed 43	protein-coding	5.25450493562761	5.07705009420757	5.288450051596	5.60836655091321	5.78530017928788	5.7529752019557	5.90746900316108	5.28480608120083	0.62325434873061	0.0449198226214078	0.216607821581816
Merged-chr13-99190801-2	chr13	99190701	99190901	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	5978.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	3.59832558159164	3.32086913171037	3.26594554604085	3.45798018094353	3.46076383395288	3.44045993812117	3.42977986517719	3.54695646726091	0.173631312626429	0.731185149794025	0.893492210633469
Merged-chr2-127391569-4	chr2	127391485	127391685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	28299.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	5.42301549966157	5.63592698725541	5.39350191575231	5.5511504068466	5.5858036046202	5.79263195484367	5.64077851663002	5.66547008402905	0.264634601894064	0.316474426994579	0.628454782921748
Merged-chr18-61416877-4	chr18	61416747	61416947	+	664.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16416.0	NM_133249	170826.0	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	3.51036455804213	3.47916837963711	3.33318909005893	3.47177716700278	3.63095888286592	3.78507608092527	3.44139735304874	3.61497730492825	0.551303276862142	0.258538939435966	0.570409248345193
Merged-chr3-107149187-2	chr3	107149087	107149287	+	966.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33956.0	NM_001081140	242151.0	Mm.245155	NM_001081140	ENSMUSG00000042861	Kcna10	Gm1962|Kcna8|Kv1.8	potassium voltage-gated channel, shaker-related subfamily, member 10	protein-coding	3.28811854886738	3.06821766463243	3.10915778484676	3.08572112423949	3.28913226601088	3.40187975604597	3.32959954758587	3.28676167805009	0.714771631476812	0.177216181597409	0.472454795682309
Merged-chr4-3929780-4	chr4	3929682	3929882	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019969, intron 1 of 5)	intron (NM_019969, intron 1 of 5)	8623.0	NM_019969	56711.0	Mm.331467	NM_019969	ENSMUSG00000003282	Plag1	-	pleiomorphic adenoma gene 1	protein-coding	5.2353918799348	4.88024066633546	4.97251702770574	4.88375437192003	5.30386540888387	5.07448265858346	5.40146372443532	5.20256134571378	0.503092291262341	0.101378205893466	0.349341562610912
Merged-chr10-80150132-2	chr10	80150032	80150232	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021565, exon 2 of 9)	exon (NM_021565, exon 2 of 9)	450.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	2.84261754311898	2.63670401657124	2.90648140104364	2.65418442988133	3.04243564412956	2.95161890743283	3.01273564635063	3.07850189995703	1.19726970183442	0.0470517114073194	0.223140157390652
Merged-chr7-110774899-2	chr7	110774799	110774999	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009667, intron 1 of 14)	intron (NM_009667, intron 1 of 14)	2295.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	3.10616148298706	3.10713795972708	3.16546488183864	3.39751349460444	3.00623165599411	3.01851185195075	3.2624668546271	3.1050187512985	-0.436793135708274	0.447993326114216	0.73332468018769
Merged-chr17-26540047-4	chr17	26539953	26540153	+	867.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB1|LINE|L1	-21459.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	4.6617299028383	4.61007314306525	4.66250647292404	4.34467262058689	4.31398673323302	4.79616571568597	4.06061114185901	4.37710031861777	-0.360338441379221	0.372792797665067	0.676473676259602
Merged-chr5-137770919-2	chr5	137770819	137771019	+	946.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7985.0	NM_001356989	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	2.67761007527154	2.93276005100593	2.83180917961059	2.82236961740054	3.13541982918876	3.32648564352105	3.39807224894867	3.31477554035723	1.9217455703883	0.00139455548554946	0.0176123252139682
Merged-chr7-35057252-4	chr7	35057162	35057362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009884)	promoter-TSS (NM_009884)	-696.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	6.82386152515543	6.58861889977768	6.33430134385523	6.73055906265655	6.58000619432799	6.36987430855725	6.54624760459627	6.7529901969619	-0.0964464440613911	0.66686861445928	0.862159276166032
Merged-chr8-122678494-6	chr8	122678332	122678532	+	748.377808	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177289)	promoter-TSS (NM_177289)	-257.0	NM_177289	12398.0	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	2.71203399763934	2.576290475916	2.85138925905831	2.72277738426416	2.9932847456905	3.31308566416582	2.90521747338584	3.14435255860239	1.63858643275121	0.00881169166064522	0.0720542435715363
Merged-chr8-25976744-4	chr8	25976709	25976909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029884)	promoter-TSS (NM_029884)	-65.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	8.10139518403068	8.15643608515564	7.85447636432298	7.83687041334741	8.06205723048723	8.01672304700836	8.22215753071392	7.89411515499257	0.0823464620461752	0.637473920890394	0.846780931511755
Merged-chr13-20151760-4	chr13	20151657	20151857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	61250.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.92963233459716	5.76720595101916	6.22056853051752	6.00156759205039	5.54074864145178	5.61036513626159	5.5541452556001	5.94799252305149	-0.518764286615472	0.0529835340798326	0.240108920508768
Merged-chr15-102243605-4	chr15	102243494	102243694	+	943.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011244, intron 3 of 9)	intron (NM_011244, intron 3 of 9)	2906.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	4.83450278014531	5.04464464944559	4.54808957934746	4.84912304418925	4.91582778310599	5.11243225035127	4.65756239862838	4.86829949110297	0.123799633583005	0.717761172662959	0.887175092131897
Merged-chr4-106908424-4	chr4	106908305	106908505	+	837.962524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-3065.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	4.05143343346779	3.66867141248795	4.29121391164014	3.79878978089518	3.97943088666426	3.69775286378912	3.74185454252817	3.8605344395359	-0.377534598935393	0.429097467342225	0.720058670531914
Merged-chr6-50379390-4	chr6	50379292	50379492	+	954.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	3445.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	4.34916126968096	4.74610883117013	4.77495051985833	4.12844789910995	4.84655255533238	4.67033418982849	5.01038887922848	4.87585751068233	0.734576371442029	0.0541776805593162	0.243054721602036
Merged-chr6-72141396-4	chr6	72141294	72141494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-18197.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	6.60464104485981	6.5539365112919	7.39744943633235	7.67116914254711	6.5457109437844	6.48268068035996	7.03315179227954	7.23889371288171	-0.404847662592457	0.199369978304778	0.501234659711634
Merged-chr1-155121576-1	chr1	155121476	155121676	+	557.0	f0_c57.idr	Intergenic	L1_Mus4|LINE|L1	-21940.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	3.04283750911738	3.4722163235135	2.836567600582	2.36164143599385	3.29053301155665	3.15793955520004	3.26278102002149	3.10401941946704	0.726903409334228	0.355474340884855	0.662112517795661
Merged-chr5-34369781-4	chr5	34369696	34369896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243123)	promoter-TSS (NM_001243123)	-137.0	NM_001243123	231128.0	Mm.286885	NM_001030306	ENSMUSG00000037210	Fam193a	-	family with sequence similarity 193, member A	protein-coding	8.30842338246638	8.44686314598651	8.0470292054338	8.09426801336711	8.33614256025439	8.27795901224404	8.5056288632181	8.0752069141273	0.0975513543439629	0.586240618409982	0.81856236198936
Merged-chr6-115463150-4	chr6	115463064	115463264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001127330, exon 6 of 8)	exon (NM_001127330, exon 6 of 8)	41098.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	6.49145035630603	6.18408076774934	6.62925429256285	6.77340576566889	6.26508965782776	6.04059196756429	5.83054282935444	6.42210086882249	-0.571741469317435	0.0277649242559365	0.159147473838976
Merged-chr6-91682473-4	chr6	91682332	91682532	+	781.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1635.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	2.37477134564066	2.37495228809441	2.44744769313237	2.11004453769111	2.58088128977362	2.69031181327135	2.57175670261092	2.75850181789202	1.90943593564145	0.00906052617497168	0.0734532110032242
Merged-chr7-110394169-3	chr7	110394055	110394255	+	724.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 17 of 40)	MTC|LTR|ERVL-MaLR	172452.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	3.50328037349399	3.80011433247541	3.39289967526723	3.33839026282423	3.46678722538457	3.31846258800956	3.38029850806629	3.39113771356866	-0.42144056547369	0.423363781421724	0.715293754843858
Merged-chr2-27757715-3	chr2	27757624	27757824	+	883.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 8 of 9)	intron (NM_001290481, intron 8 of 9)	47141.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	3.28214340011843	3.30262118923161	3.28258868776227	3.10080194082814	3.02204614536823	3.14737149354124	3.26971135934719	3.38774490444881	-0.10725342409143	0.846333849754781	0.941927981530162
Merged-chr7-35055035-6	chr7	35054949	35055149	+	947.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009884, intron 1 of 1)	intron (NM_009884, intron 1 of 1)	1517.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	3.86615000051918	3.92504301450377	3.76222198289149	4.07380213372517	4.02580303939201	3.76565905421389	3.89948082163392	3.81339509957251	-0.104323515939422	0.815385738927605	0.928768919159139
Merged-chr19-12457888-1	chr19	12457788	12457988	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-2891.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	4.80627302140279	5.14151190610343	4.8477038428932	4.96781248647724	5.12435986806988	5.3984190471555	5.22978832077423	5.28109236362492	0.57057460517526	0.0633585580420006	0.267152348964609
Merged-chr18-5101040-3	chr18	5100938	5101138	+	943.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347449, intron 22 of 30)	intron (NM_001347449, intron 22 of 30)	54449.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	4.13612980737953	4.78028746520099	4.53069309950034	4.9601349966835	3.75607706396543	4.15747275091776	4.1191228867195	4.0822670158537	-1.52929670485834	0.000639943301278917	0.00939961292648205
Merged-chr5-72259534-4	chr5	72259434	72259634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 10 of 22)	intron (NR_003966, intron 10 of 22)	56191.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	6.23725387959291	5.90711170450755	6.12420278973133	6.35868194442349	6.13129863546981	5.60830182878886	5.92346510194465	6.11982018888542	-0.318283710207247	0.225053821502252	0.53347229121849
Merged-chr9-107612313-4	chr9	107612241	107612441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3100.0	NM_001291539	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	6.31079214613214	6.3688321789803	6.19826420853522	6.12857610839956	6.24985240900434	6.27164243224741	6.06397349527903	6.42806154372394	0.0177089223716977	0.938393019968617	0.977647820850781
Merged-chr6-115268085-3	chr6	115267995	115268195	+	727.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111015, intron 10 of 12)	intron (NM_001111015, intron 10 of 12)	-15890.0	NM_001356406	110595.0	Mm.255607	NM_080639	ENSMUSG00000030317	Timp4	Timp-4	tissue inhibitor of metalloproteinase 4	protein-coding	3.70222001508933	3.63497803360395	3.2582418260114	3.50618528858076	3.61977614730352	3.43550957664617	3.48604265920791	3.49764985723977	-0.0624916135492353	0.901823871383618	0.963555825043109
Merged-chr7-110236318-4	chr7	110236229	110236429	+	905.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 1 of 11)	intron (NM_009302, intron 1 of 11)	14626.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	4.51834146419436	4.43245758435607	4.63538968033688	5.06042917694186	4.3479792261056	4.2721567927807	4.45737944302003	4.2464973441031	-0.844101285851815	0.0347567093687044	0.184540341351261
Merged-chr15-99088472-4	chr15	99088354	99088554	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024702)	promoter-TSS (NM_001024702)	-726.0	NM_001024702	239659.0	Mm.309917	NM_001024702	ENSMUSG00000001076	C1ql4	C1qtnf11|CTRP11	complement component 1, q subcomponent-like 4	protein-coding	5.73558301950376	5.23821664363039	4.71476774016012	5.23614647032333	5.58291933146722	5.46953115128756	5.46754918045132	5.49147802426888	0.402008512192316	0.222294569615015	0.530315094234949
Merged-chr10-70095205-4	chr10	70095128	70095328	+	841.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1893.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	4.00383977728679	4.06790307141516	4.51585708373123	4.32580711987582	4.02956457131968	4.12804538473155	4.18017490178572	4.19610331579325	-0.295032704099757	0.478531159667362	0.7545550478271
Merged-chr15-6396133-4	chr15	6396046	6396246	+	953.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	9398.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	4.67408909798675	4.96163442862633	4.59831057837973	4.54885186928991	4.49293477375557	4.64886876543116	4.57678817827023	4.00883744781951	-0.549077179273883	0.165965604002527	0.456928587863273
Merged-chr13-75878108-3	chr13	75878006	75878206	+	953.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028493, intron 9 of 11)	intron (NM_028493, intron 9 of 11)	38220.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	3.96532167057514	4.17846987883852	3.91229669733819	4.40545697050869	4.63173561366664	4.0889181795731	4.04961562076522	3.73550711735999	0.102686530879147	0.834161202599621	0.93671749817143
Merged-chr6-87530400-4	chr6	87530370	87530570	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	2789.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	3.32680493661184	3.1608539422191	3.72431695078033	3.33585942472581	3.40657351993434	3.18157051437019	3.2560369092941	3.48911490118769	-0.200191311868921	0.717054369756736	0.886878862913419
Merged-chr8-46742799-3	chr8	46742722	46742922	+	832.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	3077.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	3.47535301073591	3.45351259160118	3.53322691424184	3.15936319858053	3.92848551765976	3.81166229076744	3.57360664985976	3.58619413607067	1.10151648798664	0.0282413031215596	0.16093534166668
Merged-chr3-52243813-2	chr3	52243723	52243923	+	741.75	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-24514.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	3.55242341901961	3.7073218851848	3.44362459637616	3.77454224564354	3.26484557640911	3.30401972113147	3.53881316116977	3.55093940292139	-0.746000728932604	0.150689972075785	0.433529829933401
Merged-chr10-95367895-4	chr10	95367782	95367982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	31606.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	6.059602153857	5.67381814137961	6.1581150169002	6.07548728781746	5.83155087602248	5.99129956539256	5.80998733628868	5.90590074643339	-0.195473205259196	0.439913025285577	0.727441689701829
Merged-chr8-13641414-1	chr8	13641314	13641514	+	713.0	f0_balb.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	36173.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	3.38565505454763	3.66812681695997	3.16240235296517	3.29506767181834	3.12490296937804	3.00090487986565	3.08957028577521	3.03295903088145	-1.26873604733429	0.0313110871451645	0.172299332965262
Merged-chr17-25133415-4	chr17	25133311	25133511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011930)	promoter-TSS (NM_011930)	20.0	NM_011930	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	5.89409183545272	5.98084605412439	5.37351308650292	5.67873766260334	6.14606986574438	5.90292525224877	5.67183794818709	6.09794802654015	0.358807456192791	0.196514742196089	0.497660945922854
Merged-chr17-36023771-4	chr17	36023688	36023888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015618, intron 1 of 1)	intron (NR_015618, intron 1 of 1)	-3228.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	5.3765456171415	5.42825270942723	5.07175610165453	5.49475672084846	5.83827066940221	5.28940906680379	5.6200382192535	5.73861948124174	0.484911334304719	0.100278327151055	0.347539985336991
Merged-chr11-11774209-4	chr11	11774112	11774312	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34750.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	5.63475795899019	6.31492904541093	5.78901874601597	5.18555365569349	6.25870211141317	6.12176073269883	5.49445061984268	5.22062389881506	0.088412252772523	0.815794856883152	0.929019936613431
Merged-chr9-40482649-4	chr9	40482532	40482732	+	769.708313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	-26868.0	NM_172768	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	2.875630930656	3.07581717270613	3.13815664841167	2.55625896330443	2.37580204683672	2.49674234282975	2.3849779601323	2.68709764749925	-2.43378348511191	0.00288975339261716	0.031061576069631
Merged-chr7-45447640-6	chr7	45447485	45447685	+	770.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 10 of 15)	intron (NM_030678, intron 10 of 15)	12301.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	3.49033756848848	3.2121993946949	2.94429939655957	3.11420662009115	3.35899087804597	3.44713465300997	3.31956951606567	3.43825488847946	0.689810589890702	0.210090017298477	0.514572703667743
Merged-chr1-155145792-4	chr1	155145695	155145895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008209, intron 1 of 5)	intron (NM_008209, intron 1 of 5)	1019.0	NM_001355063	15064.0	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	7.00386356845573	7.13752009550545	7.17001142913131	7.08320831627477	7.14181825196983	6.82126751461082	6.9945788964704	7.10857609006008	-0.0963869739383928	0.612986495011338	0.833017024865631
Merged-chr8-25089709-3	chr8	25089608	25089808	+	678.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	12103.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	3.57760137421421	3.44679749776199	3.62979109828239	3.67020613964461	3.59033696843827	3.69420309194398	3.39729714317695	3.40761247865981	-0.190557226601386	0.700036853946971	0.879020750460333
Merged-chr11-35769419-4	chr11	35769328	35769528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145962)	promoter-TSS (NM_145962)	-67.0	NM_145962	211347.0	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	9.26346698711675	9.25396940356698	9.27376121549428	9.31414234423724	9.24903130944606	9.44894075024327	9.51268629795512	9.14059489693423	0.083481849226108	0.573919933260362	0.811973307930812
Merged-chr12-80060508-3	chr12	80060393	80060593	+	898.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	52520.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	3.46732623747531	3.7957629337978	4.15916246564709	4.02575615544112	3.67383097182401	3.38581443676928	3.39364366430077	3.19768205089523	-1.44794116486953	0.0109531127574111	0.0842480671017685
Merged-chr6-116197729-2	chr6	116197629	116197829	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4355.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	3.86498688560318	4.1478065262111	4.0136136594175	3.97293866267311	4.04995953266674	3.81671886257478	3.90071370978074	3.96378862447286	-0.169125192558888	0.693879348107653	0.87562517718207
Merged-chr18-53264296-4	chr18	53264182	53264382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	18620.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	7.45463077247107	7.18433870790604	7.42738442134148	7.44128231205014	7.40690639955093	7.25208500044337	7.58541567467456	7.42224183811361	0.0541350689544327	0.767940768492432	0.909224339615052
Merged-chr12-101718691-3	chr12	101718581	101718781	+	874.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001082976)	promoter-TSS (NM_001082976)	-158.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	3.5892656575026	3.22592665630378	3.32536719275283	3.2603048682748	4.1860577026671	3.98718240715519	3.9822047762076	4.30924459008897	2.34534100647842	9.94426725041025e-07	3.48509600500715e-05
Merged-chr10-94486192-3	chr10	94486112	94486312	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-28645.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	3.7651316930835	3.67602768237252	4.15018317422434	4.42158013228384	3.37318573800505	3.70654174556403	3.85669985711127	4.26590762671659	-0.55487134722781	0.314612538746851	0.626540369746015
Merged-chr2-170508995-4	chr2	170508894	170509094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040367, intron 1 of 2)	intron (NR_040367, intron 1 of 2)	-2236.0	NM_001110152	109054.0	Mm.28808	NM_001013369	ENSMUSG00000052033	Pfdn4	0610025M10Rik|1810063B06Rik|C-1|C1|Pfd4	prefoldin 4	protein-coding	5.76883032889852	5.73495476532723	6.02017123274151	6.08821571679102	5.76781940895742	6.23421978264762	5.74060825888943	5.74035930332499	-0.0654510549647002	0.80844738714118	0.926075454139529
Merged-chr19-59074982-4	chr19	59074886	59075086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 1 of 16)	intron (NM_001114312, intron 1 of 16)	1083.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	7.63024015513892	7.73244689317348	7.68914248617666	7.53542482162593	7.60665567761403	7.56819882204989	7.28083177226354	7.44543634033133	-0.210377761331279	0.236680069578761	0.546685185375994
Merged-chr7-101027840-4	chr7	101027719	101027919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15766.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	6.16233529518264	6.5778367637357	6.16342438332267	6.41411618487284	6.19275448974503	6.14499553746137	5.96032718246035	6.07572108702007	-0.381503236513449	0.109915240294221	0.366156076608898
Merged-chr15-78325949-4	chr15	78325858	78326058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007780)	promoter-TSS (NM_007780)	-32.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	6.38920638176722	5.85747622278939	6.37331648864906	6.25962463938596	6.1519277706145	6.24070125931597	6.15735636971488	6.3857619167877	0.000665418793479652	0.997814387551295	0.999049532170228
Merged-chr4-155833989-4	chr4	155833905	155834105	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025338)	TTS (NM_025338)	2736.0	NM_025338	66077.0	Mm.28999	NM_025338	ENSMUSG00000065990	Aurkaip1	0610033H09Rik|Aip|Akip|MRP-S38	aurora kinase A interacting protein 1	protein-coding	4.79101149301391	4.90425246992352	4.59349586921442	4.7470081172292	4.71788230551679	4.76903215754681	4.80497614439402	4.85995680025806	0.0437725307227622	0.895024480372234	0.96073210268323
Merged-chr2-156420867-6	chr2	156420817	156421017	+	912.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013510)	promoter-TSS (NM_013510)	8.0	NM_001291123	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	4.42075863670553	4.03063525219562	4.42146916358096	4.00603250705771	4.37051535913724	4.4660649196036	4.22704790033561	4.71004833763823	0.557106757513648	0.172008358281252	0.465252629537357
Merged-chr7-99432508-3	chr7	99432410	99432610	+	992.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362168, intron 4 of 17)	MIR|SINE|MIR	-33494.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	4.29443884401441	4.26959930293373	3.94825561776788	4.1926348943013	3.73889450982562	3.78892560848226	3.98066002829331	3.89503483021612	-0.936046425530643	0.0323946251710517	0.176226825675032
Merged-chr9-95511417-4	chr9	95511281	95511481	+	881.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357977, intron 1 of 25)	CpG	615.0	NM_001357975	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	3.92603495982596	3.83394336810721	4.52204020806663	3.9023905926504	4.29903954662691	4.31705157054907	4.42521953619147	4.68971029762038	0.910007366519043	0.036663969206608	0.190600691218021
Merged-chr8-107048459-7	chr8	107048403	107048603	+	998.775513	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_139229)	TTS (NM_139229)	111.0	NM_026513	68023.0	Mm.482335	NM_026513	ENSMUSG00000078931	Pdf	2610019N19Rik	peptide deformylase (mitochondrial)	protein-coding	4.52112610394483	4.63198099124482	5.07566311061028	4.81968593131141	4.59138256328597	4.94647191511818	4.89254050912581	4.97915814704214	0.148582863493623	0.674957693599426	0.86644892455821
Merged-chr11-97548122-3	chr11	97548040	97548240	+	639.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 3 of 19)	intron (NM_018873, intron 3 of 19)	26986.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	3.70395120524071	3.36952197147008	2.97542904865279	3.10141351937077	3.87312498183729	3.77765602732826	3.37587587198148	3.38703194997417	1.02104136007856	0.0862684433907962	0.320185074255691
Merged-chr6-31457159-4	chr6	31457053	31457253	+	917.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 8 of 17)	MTEb-int|LTR|ERVL-MaLR	58325.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	4.48755222692603	4.51625500939937	5.17802125226711	4.85932883979302	4.46193747147213	4.70617976084134	4.42389772820006	4.08100019043719	-0.779493253258392	0.05761946505404	0.251954460058772
Merged-chr18-80490786-4	chr18	80490701	80490901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21134.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	5.66967513022557	5.60207483795535	5.23249917200214	4.93789069706805	5.5729677522296	5.30841110957417	5.35947520014854	5.29264247642618	0.0290033936390057	0.929205146533573	0.974356826640939
Merged-chr13-55022892-4	chr13	55022798	55022998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1513.0	NM_001033245	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	6.17585986987644	6.31714587675593	6.00989591952595	6.13599802415627	6.09567378692252	6.31237463885177	6.04415485372727	6.02772847782729	-0.0668838805339603	0.774835159421631	0.912047270846052
Merged-chr7-105746619-4	chr7	105746518	105746718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009906, exon 13 of 13)	3' UTR (NM_009906, exon 13 of 13)	-2280.0	NM_020024	24075.0	Mm.274846	NM_020024	ENSMUSG00000043866	Taf10	30kDa|AU041226|TAFII30|Taf2h	TATA-box binding protein associated factor 10	protein-coding	5.33814494774877	5.65216489740675	5.33905385713938	5.55267513412682	5.60211129871962	5.38462565588303	5.8635004709325	5.53943274451944	0.212333888395354	0.451755381694132	0.736246988273402
Merged-chr7-102017519-7	chr7	102017430	102017630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010531, intron 2 of 6)	intron (NM_010531, intron 2 of 6)	625.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	4.49878739619084	4.8873785270509	4.8525668203981	4.14469718930333	4.53246383864186	4.88129109446594	4.75896881870856	4.94796791216116	0.353092929354928	0.373518179451598	0.677113210162732
Merged-chr1-191110638-3	chr1	191110562	191110762	+	885.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12248.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	3.45806174736473	3.37704803804266	3.51011357349819	3.60448393748748	3.58018485987292	3.13345415121227	3.15441959167271	3.28835260372088	-0.627652902816877	0.259438713840425	0.571250530584125
Merged-chr5-148812188-2	chr5	148812093	148812293	+	791.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34230.0	NR_131106	78015.0	Mm.243839	NR_131106	ENSMUSG00000085740	4930505K14Rik	-	RIKEN cDNA 4930505K14 gene	ncRNA	2.67261580809398	2.61295925507398	3.06410687928017	2.9750322482119	2.92377483636884	3.05572904265121	3.05181879106472	3.17020280709959	0.845059707789846	0.190825885848262	0.490284569083293
Merged-chr16-91547027-4	chr16	91546935	91547135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008338)	promoter-TSS (NM_008338)	-59.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	6.57848323032419	6.99376636142657	6.39794022703351	6.53288592998221	7.06244522553382	6.95958543027966	7.180678647377	7.105606043102	0.608656129133946	0.00513323818526498	0.0484201909341341
Merged-chr10-94059798-4	chr10	94059689	94059889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 2 of 20)	intron (NM_053072, intron 2 of 20)	23788.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	6.53753832261313	6.07178394766277	6.3384482289706	6.2737762738584	6.5970443039582	6.09152310054257	6.35887095261249	6.35186636892048	0.0952930179781882	0.692615560943363	0.87499975964798
Merged-chr5-148556738-3	chr5	148556693	148556893	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4005.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	3.75614138160054	3.97997524722999	3.90080484538912	3.45948489303913	5.43057910417258	5.29638083796009	5.4380626179179	5.25206837590905	3.66267398258483	4.89848855626555e-22	2.1522809688051e-19
Merged-chr7-112285780-3	chr7	112285740	112285940	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001193305, intron 3 of 25)	intron (NM_001193305, intron 3 of 25)	60004.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	4.60758970798562	4.09376789761545	4.4365407901363	4.70601776080341	3.74007532372227	3.77177420956824	3.93197942451028	3.50705522956413	-2.02297608519531	2.64272838754377e-05	0.000651113755268184
Merged-chr7-99164053-3	chr7	99163962	99164162	+	872.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026384, intron 4 of 7)	intron (NM_026384, intron 4 of 7)	18651.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	3.89424671530655	4.02620894825521	4.246894105881	4.07330726357164	3.71657544523053	3.5986618112275	3.87867497290522	4.03610517663839	-0.701719281515136	0.122630379661306	0.388118578824182
Merged-chr18-80322683-7	chr18	80322521	80322721	+	990.2976070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001190373, exon 3 of 4)	exon (NM_001190373, exon 3 of 4)	41633.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	4.83433594753154	5.04263683186812	4.79566066911267	5.33345979249715	5.1229411835024	4.56184727953993	5.20638529412753	5.07834382468749	-0.0348026046381225	0.922897372345974	0.971428538606896
Merged-chr10-120364261-3	chr10	120364175	120364375	+	576.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010441, exon 5 of 5)	exon (NM_010441, exon 5 of 5)	-25248.0	NR_040626	320626.0	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	3.40498549740847	3.27745302157221	3.45822733858859	3.12840469865548	3.18904955812324	3.40709256959784	3.09417233807696	3.55535332313584	0.0219970273305116	0.968273696428432	0.988694268692349
Merged-chr13-24960190-3	chr13	24960087	24960287	+	646.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008156, intron 8 of 25)	intron (NM_008156, intron 8 of 25)	17035.0	NM_008156	14756.0	Mm.291831	NM_008156	ENSMUSG00000021340	Gpld1	6330541J12Rik|AW546131	glycosylphosphatidylinositol specific phospholipase D1	protein-coding	2.8252355669986	2.73273187499491	2.94228453360935	2.98381878055119	2.55153786236177	2.65847298873438	2.93044584666313	2.69610429571978	-0.790722910219144	0.232340622613288	0.541946192758711
Merged-chr9-32680317-4	chr9	32680194	32680394	+	977.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-15748.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	5.67760947344649	5.34270021199054	5.63065031910019	5.88027715866933	5.15283556853169	5.11478748974604	5.20578387344582	5.52492731304622	-0.706404487099351	0.0191553961260033	0.124301389447788
Merged-chr13-75788393-4	chr13	75788286	75788486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51499.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	6.22327744607741	6.125471030685	5.9066558896671	6.40541202601141	6.3507519294434	6.03535823454344	6.24710852339748	5.6062966085445	-0.137256782889565	0.619341773658167	0.836510969776369
Merged-chr10-37136208-3	chr10	37136102	37136302	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008538, exon 2 of 2)	exon (NM_008538, exon 2 of 2)	2724.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	3.23444809650604	2.72547442410903	2.78948987819219	3.15322464430803	3.2979782831724	3.4020180527601	3.05103924409454	3.06046471503609	0.823127746214515	0.200323029635007	0.502388588767181
Merged-chr9-67424207-3	chr9	67424151	67424351	+	785.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081242, intron 2 of 57)	intron (NM_001081242, intron 2 of 57)	135452.0	NM_001081242	70549.0	Mm.33645	NM_027458	ENSMUSG00000052698	Tln2	5730421P04Rik|AI507121|AI787438|AL118320|mKIAA0320	talin 2	protein-coding	3.20963891701441	3.85044331225467	3.48079680717704	3.15615103647312	2.78809692157854	3.05761711265028	3.07334291495448	3.01491274068632	-1.89721179547792	0.00346805171108265	0.0358016610214868
Merged-chr15-62041328-4	chr15	62041213	62041413	+	911.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	2056.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	4.29104147569623	4.11588764988562	4.04351858188187	4.40401481751033	4.39073212833652	4.77737343070695	4.47858960069702	4.14601585115609	0.540657409474293	0.188954703793983	0.48779670955222
Merged-chr6-28262797-3	chr6	28262692	28262892	+	867.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1191.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	3.54059407117427	4.09831341354822	3.94438860041608	3.51219778747336	4.03287835091683	4.41976822540075	3.92733146987501	3.99072580908021	0.850375675917211	0.0773512095188251	0.300748815442531
Merged-chr16-10950730-4	chr16	10950633	10950833	+	970.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35936.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	4.82435125700304	4.95472756894585	4.48278248963569	4.64252150219951	5.23879021815551	5.17847830158637	4.87698586010335	5.61037701811758	1.03322355046094	0.00319854822882261	0.0335399918060348
Merged-chr1-64927608-4	chr1	64927505	64927705	+	955.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	intron (NM_001039493, intron 2 of 7)	29219.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	4.85338285810859	4.86984841853936	5.33364142497898	5.27500290551426	4.99918836872279	4.91076178849102	4.86928816971372	5.15953408551393	-0.233938977322116	0.480491245517809	0.755982465057009
Merged-chr16-10969640-4	chr16	10969521	10969721	+	937.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	23500.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	4.52335107835535	4.05728981227707	4.31699699583265	4.67843550156104	4.37115663123529	4.35096606119429	4.61134635159399	4.06800146605336	-0.144216828565642	0.731849922172834	0.893842682027583
Merged-chr11-63898901-4	chr11	63898772	63898972	+	920.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018805, intron 1 of 1)	intron (NM_018805, intron 1 of 1)	23412.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	4.18080632425512	4.26303686115028	4.27807280221051	4.22278446302412	4.65822685473171	4.3579774089686	4.61818635449847	4.48921477320493	0.716996867758011	0.0522310932904116	0.238002720930446
Merged-chr9-89256743-4	chr9	89256640	89256840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	45356.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	7.62744276637108	7.40861421642822	7.48239505162753	7.42591781186368	7.37547756051377	7.33879725379564	7.16021650741142	7.03240501187482	-0.330088988190072	0.0762386169112329	0.298263009064823
Merged-chr4-102558068-4	chr4	102557964	102558164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-11996.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	5.84893642132096	5.75718138679389	5.50220057366566	5.94515514418925	5.61608301422763	5.5877175643145	6.40373799005657	6.09917179128669	0.30098282099568	0.322447195441798	0.633955214699031
Merged-chr6-29609896-4	chr6	29609807	29610007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347079)	promoter-TSS (NM_001347079)	-58.0	NM_001347079	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	7.07374086079074	7.35123209775023	6.57475838305984	7.02653335932368	7.15771697573619	7.17884260560413	6.74987665577392	6.91993335916343	-0.0318925910828118	0.891538610405019	0.959385213525176
Merged-chr12-106027007-3	chr12	106026916	106027116	+	809.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029843, intron 1 of 13)	intron (NM_001029843, intron 1 of 13)	16753.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	2.79529083655359	2.95887797361864	2.51077576970212	2.9870324817967	2.66276540028912	2.96568883001858	2.84800084327924	2.91637863706548	0.0813366103256722	0.904441113920662	0.964559678221358
Merged-chr16-18498758-4	chr16	18498658	18498858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023120)	promoter-TSS (NM_023120)	45.0	NM_001285491	13972.0	Mm.236139	NM_023120	ENSMUSG00000000884	Gnb1l	ESTM55|Gm16314|Me49f07|Wdr14|Wdvcf	guanine nucleotide binding protein (G protein), beta polypeptide 1-like	protein-coding	7.22164251457848	6.9754043394494	7.13600904830494	6.99436232567014	7.16079527761819	6.88965619885997	6.97038217331911	6.78346784505968	-0.153450593005509	0.442990928979862	0.729656432426533
Merged-chr16-92466326-4	chr16	92466230	92466430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081549)	promoter-TSS (NM_001081549)	-161.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	8.72004977856137	8.85373832589489	8.84729534140175	8.6745148442451	8.79125874434268	8.88643612680565	8.76033195862702	8.59486247656976	-0.013929631809833	0.926137864070692	0.972811035751841
Merged-chr9-37430773-4	chr9	37430659	37430859	+	883.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164767, intron 1 of 27)	intron (NM_001164767, intron 1 of 27)	2416.0	NM_001164767	19649.0	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	4.91799859814322	5.13593654900003	4.41929250043435	5.12266307270415	5.11911480905339	5.26937441186612	5.41197794334507	5.30381314524224	0.621558030581234	0.0718037309334546	0.28789488040294
Merged-chr8-35429163-4	chr8	35428983	35429183	+	648.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53342.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	3.17297336345146	3.18220626734467	3.45915643273297	3.13954228787971	3.43192054666863	3.40852052947074	3.39301467067125	3.35045556170324	0.58177811441407	0.26513887717453	0.576956662317123
Merged-chr11-101425562-2	chr11	101425462	101425662	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026865)	promoter-TSS (NM_026865)	-234.0	NM_001361123	73635.0	Mm.472804	NM_026865	ENSMUSG00000097487	Ptges3l	1110069E20Rik|1700113I22Rik	prostaglandin E synthase 3 like	protein-coding	3.57961139359045	3.8261614109372	3.99305520343789	3.47072327267543	3.87745825351043	3.92398282218392	4.01778461991725	3.69415470563376	0.472008224117944	0.320822306297028	0.632585369827533
Merged-chr19-4625638-4	chr19	4625528	4625728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023131)	promoter-TSS (NM_023131)	-11.0	NM_023131	19671.0	Mm.391143	NM_023131	ENSMUSG00000024889	Rce1	D19Ertd283e|D19Ertd98e	Ras converting CAAX endopeptidase 1	protein-coding	6.55445625597195	7.13074072802165	6.69801984120074	6.71547300859114	6.82650776243346	6.87443328114733	6.32402042797978	6.63197353296123	-0.15650974120527	0.513281887947191	0.776401540998876
Merged-chr10-39731950-4	chr10	39731825	39732025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038037)	promoter-TSS (NR_038037)	82.0	NR_038037	327744.0	Mm.295265	NM_183198	ENSMUSG00000087177	E130307A14Rik	-	RIKEN cDNA E130307A14 gene	ncRNA	7.10905428051846	7.44086776252272	7.32944140864669	7.21329927455665	7.80311766787606	7.75531403772635	7.7029255594446	7.52886930679088	0.566773487677114	0.00168973834478616	0.0204860987299496
Merged-chr6-37427342-4	chr6	37427234	37427434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	14814.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	7.00048179385401	7.47764358157111	6.94771747885728	7.00017615331341	7.58355140219222	7.61962185902386	7.52928284141544	7.04850507513355	0.459774053627289	0.0394394157348542	0.200004144527728
Merged-chr11-110980448-3	chr11	110980336	110980536	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010604, intron 1 of 1)	intron (NM_010604, intron 1 of 1)	12403.0	NM_001252207	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	4.85819056685318	4.67008666412675	5.07897060826753	5.39174150085385	4.23892453217891	4.3335129579545	4.61253669552233	4.40898358630738	-1.38665946222598	0.000371905388463513	0.00604932670142696
Merged-chr4-116627500-4	chr4	116627405	116627605	+	998.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284229)	promoter-TSS (NM_001284229)	-8.0	NM_001284229	50927.0	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	5.06895473349747	5.09353282656222	4.964613616221	4.91506051598577	5.43243040654447	5.13997639477687	5.14152585595121	5.06636525979637	0.397342739568449	0.195015977882887	0.495751510347358
Merged-chr4-116053708-7	chr4	116053605	116053805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028142, exon 1 of 6)	exon (NM_028142, exon 1 of 6)	171.0	NM_028142	72181.0	Mm.282560	NM_028142	ENSMUSG00000028706	Nsun4	2310010O12Rik|2810405F18Rik|AI507900|Shtap	NOL1/NOP2/Sun domain family, member 4	protein-coding	5.78553958784955	6.03686914936707	6.1224266300293	5.92313418969396	5.62737379267337	6.21614610789769	5.92401393739043	6.31728528576709	0.104280017438588	0.701938838153277	0.879929986455189
Merged-chr2-11395163-4	chr2	11395048	11395248	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040615, intron 1 of 2)	RLTR25B|LTR|ERVK	3352.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	5.66635006977718	6.04896994461898	5.76491023327022	5.57330770050657	5.3729398344204	5.84182454828189	5.56067975505517	5.28232948799367	-0.414332437851436	0.156357101175359	0.442219656874513
Merged-chr7-142334368-3	chr7	142334249	142334449	+	861.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177265, intron 3 of 3)	intron (NM_177265, intron 3 of 3)	30847.0	NM_015809	50775.0	Mm.389990	NM_015809	ENSMUSG00000045236	Krtap5-4	-	keratin associated protein 5-4	protein-coding	3.0460897800292	3.17303919598448	2.97739029755707	3.18535582124181	3.32053516327343	3.51368898076673	3.38436171750388	3.28977666928893	0.995046148639204	0.0688430249792431	0.280410908955871
Merged-chr16-90726893-1	chr16	90726793	90726993	+	935.6666869999999	f0_balb.idr	intron (NM_025642, intron 1 of 4)	intron (NM_025642, intron 1 of 4)	478.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	4.6955340244572	4.25864927794086	3.93949650503154	4.21564518634427	4.24019400037173	4.37188684094662	3.97946300254701	4.32909462519863	-0.154276517470218	0.721066681405431	0.888617497696901
Merged-chr11-82004995-4	chr11	82004866	82005066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30611.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	7.37006964523154	7.65730764187655	7.89744899632123	7.28630151409534	7.58877243989048	7.58965956290767	7.53510912641886	7.60201047448757	0.0164062465689267	0.934737537509061	0.97635719558922
Merged-chr18-70620292-4	chr18	70620201	70620401	+	940.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010773, intron 5 of 6)	intron (NM_010773, intron 5 of 6)	52009.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	4.18010053305609	4.22522298184089	4.12911802736749	4.10531156017116	4.75778615438675	4.2565656984633	4.75381150093209	4.67559372257943	1.10597159867492	0.00359375602625938	0.0368110462214874
Merged-chr4-67473183-3	chr4	67473062	67473262	+	723.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	645611.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	4.24190216796465	3.89955774810344	4.62862317711568	4.12180064646055	3.23726125639328	3.243539909729	3.48509589137673	3.42841267710228	-2.99610518820816	4.18701438944795e-07	1.5760311857563e-05
Merged-chr19-4207169-4	chr19	4207083	4207283	+	849.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5580.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	3.60415332725984	3.94740812229007	3.78223618167426	3.75492003379611	3.82562885076613	4.06212297440473	4.18463231879846	4.24095049961528	0.832674596626001	0.0618773878510553	0.263183184335241
Merged-chr7-45465807-2	chr7	45465707	45465907	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007527, intron 3 of 5)	intron (NM_007527, intron 3 of 5)	1091.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	2.68252578180557	2.59349640318211	2.68286320815215	2.48295142733381	2.73926738418764	2.51374254371452	2.67310729871225	2.55331792967404	0.11196156210245	0.866491554469722	0.949986943850413
Merged-chr16-36590086-4	chr16	36590002	36590202	+	976.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-27968.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	4.34156718687511	4.4191260132558	4.58627574631346	4.44830662540899	4.37211449681531	4.27556756411654	4.66975545424247	4.19780467068544	-0.135365751498232	0.723644541813941	0.889715420547812
Merged-chr2-68368033-3	chr2	68367939	68368139	+	731.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 7 of 17)	intron (NM_016866, intron 7 of 17)	103942.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	3.8806965416392	3.2830712742102	3.71039648729575	3.54321346846942	3.47443030269203	3.18288331524441	3.32885336246964	3.27671439228689	-0.993934506480806	0.0740441484642658	0.293190278345459
Merged-chr10-26760599-4	chr10	26760505	26760705	+	680.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11907.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	3.39779672215539	3.36229138588344	3.4496320946074	3.20836274496963	3.52214652132979	3.07307746454267	3.21842902646221	3.22808968691595	-0.250256338731989	0.653214007244426	0.854997557892684
Merged-chr16-36997857-4	chr16	36997750	36997950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-7383.0	NM_001358217	207215.0	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	5.71603370376363	6.28715645680118	5.87070404782795	5.88974495207796	6.06475817845472	6.24588335507852	6.15726055444277	5.91386206797485	0.216489826615714	0.399961634340956	0.698005913076911
Merged-chr3-104644139-4	chr3	104644038	104644238	+	801.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009196, intron 1 of 4)	RSINE1|SINE|B4	5474.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	3.73234177769742	3.82213038332837	3.78097579761403	3.47395349938677	3.63901761999316	3.37956682047721	3.7169879508214	3.45929908718751	-0.4435443675278	0.377312415755314	0.67996861637713
Merged-chr4-138913489-2	chr4	138913376	138913576	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028453, intron 1 of 7)	CpG	471.0	NM_028453	73162.0	Mm.238081	NM_028453	ENSMUSG00000041161	Otud3	3110030K17Rik	OTU domain containing 3	protein-coding	3.22791846557559	3.16644293959792	3.54092509213229	2.96202136465401	3.16272829240176	3.21673120458342	3.15661081198191	3.39221468445005	0.0123024330117184	0.982909490186186	0.993870423643528
Merged-chr7-75739270-4	chr7	75739157	75739357	+	803.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 29 of 36)	intron (NM_029332, intron 29 of 36)	-109081.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	4.23149606852674	4.20445233946248	4.0438604265296	4.12218211197331	4.04466864363437	3.94627256970586	4.07608613873457	4.6364613279249	0.133311864257582	0.758023670251823	0.904926340425875
Merged-chr18-36735027-4	chr18	36734918	36735118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028036)	promoter-TSS (NM_028036)	-52.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	8.2493411719671	8.15214584317337	8.14909479046829	8.25240118815833	8.24082355534649	8.1954754935529	8.20612163129625	8.33910502046142	0.0547798337952775	0.716211858639311	0.886501754160268
Merged-chr7-4071279-4	chr7	4071206	4071406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8102.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	5.47958502716571	5.06810178505146	5.34078133359567	5.6013037525976	5.49824205307217	5.14522166058044	5.25421527839795	5.30719771073514	-0.146977690709607	0.631393018638226	0.843388211517721
Merged-chr10-70181592-4	chr10	70181511	70181711	+	957.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111121, intron 6 of 8)	intron (NM_001111121, intron 6 of 8)	-23053.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	4.62650712487431	4.39241147853768	4.5874404703398	4.59028304554695	4.99223140251576	4.63526743598817	4.68101554419282	4.41189683816887	0.341031932239344	0.352420494920383	0.659568292805988
Merged-chr11-78382870-3	chr11	78382764	78382964	+	805.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008238, intron 1 of 8)	intron (NM_008238, intron 1 of 8)	3744.0	NM_008238	15218.0	Mm.4496	NM_008238	ENSMUSG00000002057	Foxn1	D11Bhm185e|Fkh19|HFH-11|Hfh11|Whn|nu|nude	forkhead box N1	protein-coding	3.82899853457912	4.29884431446133	4.24203659964457	3.60954058768391	3.46101282013572	3.55461907490164	3.28718484930726	3.22233085433841	-2.03185416571284	0.000395842764898337	0.00639194468300788
Merged-chr10-91082094-4	chr10	91082003	91082203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027078)	promoter-TSS (NM_027078)	640.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	5.51887165688434	5.56742918620421	5.91268074289962	5.81113585042478	6.07521402153071	5.75852270498544	6.144202222443	6.30951217097726	0.589584891343924	0.0261260818355687	0.153003251140781
Merged-chr2-60125328-4	chr2	60125236	60125436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	404.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	5.85605094184856	5.64243390106072	5.98562682531127	5.45192362761448	5.6833179730332	5.72950776520253	5.60723948865639	6.04090417410487	0.0686590090556838	0.807376193188592	0.925731320971696
Merged-chr3-79114415-4	chr3	79114320	79114520	+	848.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 1 of 23)	L2c|LINE|L2	30467.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	4.23396099892317	4.06173627907548	4.28117161422517	3.82471240315993	4.59096869488149	4.62379122833402	4.71388191938275	4.18379040773494	1.08113998498152	0.00798401315575703	0.0671187046667804
Merged-chr4-57947109-3	chr4	57947015	57947215	+	781.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 3 of 4)	GC_rich|Low_complexity|Low_complexity	9296.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	3.77615185218511	4.21600687743927	3.77667550473115	3.91235594068707	3.74444932837039	3.78486623018054	3.59512527223933	3.8757626709518	-0.530014351901848	0.255490576753066	0.567074250644377
Merged-chr19-44295962-4	chr19	44295858	44296058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009128, intron 2 of 5)	intron (NM_009128, intron 2 of 5)	2282.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	6.32016918737243	6.03692456230546	5.76134510502225	5.96444602923288	6.03762263155831	5.93865163636399	5.92432946230281	5.97263280052729	-0.0928528345127638	0.71046047790288	0.884137043585535
Merged-chr9-59340177-1	chr9	59340077	59340277	+	543.0	f0_c57.idr	intron (NR_153195, intron 5 of 15)	intron (NR_153195, intron 5 of 15)	13331.0	NM_001359558	102774.0	Mm.200714	NM_175325	ENSMUSG00000025235	Bbs4	AW537059|AW742241|D9Ertd464e	Bardet-Biedl syndrome 4 (human)	protein-coding	2.83169008018177	2.62255137722159	2.76431605633329	2.51887324210989	3.09271339953782	3.00737965838403	3.05968819024566	3.12465967273187	1.83646482350998	0.00293582463052014	0.0314333726497884
Merged-chr3-15999692-3	chr3	15999581	15999781	+	609.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081687, intron 1 of 3)	RLTR45|LTR|ERVK	6651.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	3.54137502584281	3.45064104985492	3.48983163380703	3.53292407443069	3.16387957360814	3.30418431851485	3.36636384721059	3.58972792233152	-0.507542430102547	0.330894119297423	0.642104407905452
Merged-chr9-58204786-4	chr9	58204728	58204928	+	978.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161541)	promoter-TSS (NM_001161541)	-509.0	NM_001161541	320563.0	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	4.90239645428044	4.9425326808453	4.44883635584583	4.72364932126065	4.94528658680081	5.07517083182736	4.94671923284885	4.79107550196804	0.353398713355648	0.295025461522526	0.607120562632912
Merged-chr11-29694270-4	chr11	29694125	29694325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194051, intron 1 of 8)	intron (NM_194051, intron 1 of 8)	451.0	NM_194051	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	6.00592051360764	5.95281897523355	5.83011341625236	5.8902029239683	5.94967938205053	5.74524292289385	5.95560087320416	5.50380817169773	-0.176552637221085	0.492275177930536	0.763376447368555
Merged-chr6-124814166-4	chr6	124814063	124814263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001326594)	TTS (NM_001326594)	133.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	7.21420495185963	7.00722022494904	6.70976189408985	7.02254592897461	6.88201714837498	7.30358190584335	7.34805741937124	7.02693988811351	0.20002315605932	0.354338464118229	0.66105817669406
Merged-chr13-73459367-4	chr13	73459337	73459537	+	839.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7946.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	4.24167422632875	4.22535893137648	3.82327183697383	4.37057116100975	3.6839135691849	3.70150383106097	3.96179475688667	3.87497397273526	-1.06311517048985	0.0204320273196492	0.129804647678089
Merged-chr18-88932319-1	chr18	88932219	88932419	+	786.666687	f0_balb.idr	Intergenic	Intergenic	-38112.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	3.62738136646925	3.85549564226291	3.99714847803171	5.21248832564165	2.95535803810913	3.16825266094411	3.48750442161311	3.36143199656389	-3.39593975277131	0.00142964132009282	0.0179566683470772
Merged-chr6-140623487-4	chr6	140623396	140623596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009637)	promoter-TSS (NM_009637)	-6.0	NM_001005605	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	8.80940498971956	9.02996519457516	8.96088747188274	8.86091348726741	9.1000423263914	9.25941697040057	9.04183286849862	8.75966752576468	0.168122216877859	0.301989495068053	0.614292131614338
Merged-chr2-154574429-3	chr2	154574357	154574557	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4565.0	NM_007891	13555.0	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|Tg(Wnt1-cre)2Sor|mKIAA4009	E2F transcription factor 1	protein-coding	3.06941535198192	2.90322568582036	2.98573074712842	2.58349128874325	4.31071560517404	4.22143546293922	3.85240590806705	4.19819640091207	5.26456920848056	5.6523781393972e-15	9.10250279602157e-13
Merged-chr5-32690110-3	chr5	32690006	32690206	+	794.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56236.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	3.43979825805606	3.26526133937429	3.12457402448503	3.23673518108704	3.75719781675554	3.43754496396764	3.84744356707705	3.38102542674965	1.19636363748039	0.022636912992243	0.138986701446982
Merged-chr7-141168016-4	chr7	141167955	141168155	+	934.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172100, intron 1 of 9)	intron (NM_001172100, intron 1 of 9)	631.0	NM_001172101	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	4.18205123964473	4.19112669734475	3.99574055779459	3.9579565480285	4.14456047988761	4.01251664691307	4.12026699418149	4.09016031309276	0.0478179307763676	0.907158853200919	0.965624681953793
Merged-chr8-13287973-4	chr8	13287901	13288101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172282)	promoter-TSS (NM_172282)	-12.0	NM_172282	234076.0	Mm.219813	NM_172282	ENSMUSG00000038497	Tmco3	B230339H12Rik|C87304	transmembrane and coiled-coil domains 3	protein-coding	7.1229074668981	7.38796915614794	7.67944601209843	6.9507877684702	7.10016524190447	7.20312217034595	7.07646261756824	7.24309734532666	-0.202577609224952	0.360606946294139	0.665919212407671
Merged-chr3-105017600-4	chr3	105017489	105017689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	35364.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	6.68456265498844	7.03037247126146	6.92306717555722	6.67668248666365	6.2082011145405	6.11651004804297	6.481463862982	6.21151553281617	-0.8341533223205	0.00023489907630989	0.00415194471136372
Merged-chr12-111694533-4	chr12	111694402	111694602	+	985.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16397.0	NM_177374	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	4.45927236047787	4.5536451089418	4.62345544673392	4.36829515439158	4.21907552519048	4.54669146303159	4.56299598733171	4.9835424221641	0.226978050767835	0.562306102616507	0.805562766994875
Merged-chr1-58393672-4	chr1	58393545	58393745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025824, intron 1 of 11)	CpG	509.0	NM_025824	66882.0	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	4.56652741331794	4.83931927256566	4.8072501020825	4.84791146139784	4.95392402005326	4.65333975336967	4.70984501730293	5.03609628972491	0.158492398504067	0.641253383258161	0.84863530101299
Merged-chr12-99084386-4	chr12	99084287	99084487	+	863.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78421.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	3.73150575483811	3.74528563959646	3.78735516886171	3.83399609183143	3.98187024417986	4.01332427065559	4.18307975374415	4.16040947777099	0.843139976062135	0.0484929234903906	0.227323353603959
Merged-chr19-5841705-6	chr19	5841627	5841827	+	959.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_003513)	TTS (NR_003513)	3751.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	4.14125208806789	4.39980545806662	4.57131773362134	3.87590576302888	4.18194393965874	4.58820896319405	4.58473368183462	4.23730117998698	0.346607404714794	0.422590075126571	0.714839748072846
Merged-chr7-127769081-4	chr7	127769016	127769216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198424)	promoter-TSS (NM_198424)	-699.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	7.65717088211106	7.75822753679174	7.55327754682307	7.37001279965261	7.75324535505679	7.86889915894907	7.77088564529286	7.61915503442995	0.224899050772914	0.211675809674679	0.51637783456145
Merged-chr17-24170532-2	chr17	24170443	24170643	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361532)	promoter-TSS (NM_001361532)	-865.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	3.46876168606385	3.24057066944174	3.29692133559326	3.25606860860899	3.24756261025566	3.53002876454584	3.45510461898216	3.71078083641302	0.610646418009926	0.24149597090575	0.552034276752374
Merged-chr7-80014037-4	chr7	80013924	80014124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10790.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	6.4476266147707	6.21802396696912	5.99108272849069	6.12927464083793	6.40423029756914	6.33807552903614	6.02730688937001	6.11739653456585	0.053579913099792	0.825454227825872	0.933108872014231
Merged-chr19-10688731-4	chr19	10688619	10688819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361963)	promoter-TSS (NM_001361963)	-16.0	NM_181403	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	7.042646667189	7.77376431544495	6.99378313349207	6.41674382748105	7.00554464268757	7.37105103758501	7.16872002355845	6.73507365820698	-0.0802381310582945	0.789093023682786	0.91835324030065
Merged-chr19-41345152-4	chr19	41345038	41345238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	39932.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	6.08185865978315	6.41642355883714	6.10465381091707	6.23954268899943	6.30940287582115	6.77133599300309	6.09467955730168	6.22324662002717	0.22428923820236	0.376810980836141	0.679494401442451
Merged-chr1-97769371-6	chr1	97769285	97769485	+	986.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026250)	promoter-TSS (NM_026250)	707.0	NM_173760	227399.0	Mm.220817	NM_173760	ENSMUSG00000040648	Ppip5k2	AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433	diphosphoinositol pentakisphosphate kinase 2	protein-coding	4.51127605963248	4.39152753217025	4.66487448291125	4.47127622389671	4.29430086916799	4.6431438757903	4.27250783469044	4.62528363872503	-0.105393711370344	0.779077566613778	0.913830267356626
Merged-chr6-28262482-2	chr6	28262388	28262588	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001081678)	promoter-TSS (NM_001081678)	-887.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	5.57740975924056	6.466563738119	5.32262597254706	5.02273664531911	6.22420182190237	6.36447354091811	6.10319896645203	5.48431876692498	0.556784793801936	0.333737625634407	0.644520998861314
Merged-chr9-66795613-4	chr9	66795535	66795735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177583)	promoter-TSS (NM_177583)	-212.0	NM_177583	208117.0	Mm.41291	NM_177583	ENSMUSG00000032375	Aph1b	2310057K14Rik|Aph1c	aph1 homolog B, gamma secretase subunit	protein-coding	8.2614802068252	8.75225356995835	8.56978051969637	8.40895668176883	8.64227669483967	8.63982695303256	8.76837558170205	8.55012548882321	0.17833816623459	0.289648588436692	0.601707240145205
Merged-chr13-85288567-4	chr13	85288477	85288677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145452, exon 1 of 25)	exon (NM_145452, exon 1 of 25)	909.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	5.47002537887826	5.31257809658962	6.03168346213415	5.19286434892843	5.14128580224422	5.34268992086579	5.35948397644076	5.1260385131396	-0.51095355775881	0.124641315867655	0.391952472813953
Merged-chr16-55733982-4	chr16	55733854	55734054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88184.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	6.12398578483702	6.18211357063678	6.63948862802289	6.72075655467448	6.3086265661355	6.28086654041559	6.05089212165385	5.91434960070725	-0.454811128724108	0.0842524157771096	0.31578130180606
Merged-chr2-22822488-4	chr2	22822393	22822593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 3 of 13)	intron (NM_019456, intron 3 of 13)	48166.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	5.49653957199153	5.53797735866564	5.41160909959282	6.11333031332348	5.57400595245057	4.81673814329699	5.54966778191397	5.43707651770889	-0.521861138275859	0.131342559098723	0.403471236204221
Merged-chr10-88682232-7	chr10	88682181	88682381	+	986.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011461, intron 1 of 5)	B1_Mus1|SINE|Alu	742.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	4.2732860761383	4.30555827520873	4.44078867301474	2.89763376778994	4.11044163105059	4.53581805235769	3.9030901217297	4.74807444383871	0.495542886007109	0.597794396991369	0.825587520108189
Merged-chr19-56726521-8	chr19	56726462	56726662	+	878.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4190.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	4.56047762988573	4.32512466508893	4.1972457822228	4.48014552523752	3.89784335714879	4.06307698689821	4.08290599749113	4.4093995471136	-0.701972663430991	0.092209289768048	0.332162566488162
Merged-chr14-61037820-2	chr14	61037733	61037933	+	703.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013869, intron 1 of 9)	CpG	154.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	2.79861126792594	2.72326273104999	2.93930086070859	2.61795964393661	3.13870496303393	3.29860051284996	3.22289839286352	3.38548661105065	2.15928835551607	0.000292978188796126	0.00497587556676675
Merged-chr2-80176186-2	chr2	80176086	80176286	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46528.0	NM_001355140	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	2.98030586264621	2.82819349228174	3.10618294247892	2.62901115629662	3.48067197272362	3.09247238820585	3.1519680771243	3.27246422562327	1.55634609153767	0.0109985856924163	0.0844973913654074
Merged-chr1-165617374-4	chr1	165617253	165617453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	17188.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	6.42333328512671	5.58943086640373	6.59608092538365	6.63266166088217	6.17583527576119	5.99342074758896	6.48751500316151	6.29705823570053	-0.189861896606304	0.526581423840468	0.783803651205536
Merged-chr12-17681984-2	chr12	17681884	17682084	+	848.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-8825.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	3.10841868327979	3.3436657888146	3.41713831919459	3.61986435776241	3.46413177240923	3.41410230507923	3.45705145938274	3.41530098920037	0.131314373807313	0.807290737866481	0.925729780371477
Merged-chr7-116443485-4	chr7	116443394	116443594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011083)	promoter-TSS (NM_011083)	-36.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	7.31949430864204	7.40542226458877	7.08024397089346	7.27874530238263	7.52762853038322	7.51844002193191	7.44034520173743	7.40608250393784	0.263715167965019	0.139038210852587	0.414593226669937
Merged-chr14-105198653-3	chr14	105198545	105198745	+	774.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21318.0	NM_134077	74213.0	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	3.42876832571111	3.4757445375053	3.37466804015782	3.13692811152739	3.33956592744099	3.30766085992536	3.18498896826012	3.52972235860058	-0.0161188286621623	0.976076684839674	0.991496779743737
Merged-chr17-65740507-4	chr17	65740412	65740612	+	988.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	32240.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	4.94841554630953	5.05316228599413	5.32447453724053	5.32522232908518	4.91232883337513	4.80205298507933	5.53473056863522	4.66832497791711	-0.290603559862069	0.427180180799863	0.718365537107601
Merged-chr3-115716424-4	chr3	115716326	115716526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1371.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	5.74090621401928	5.51738664227438	5.69243844508517	5.9428822519093	5.68836856009544	5.45890724439437	5.7830806415773	5.7618473224677	-0.108301590639871	0.689206261691664	0.873226873047775
Merged-chr7-89216426-4	chr7	89216349	89216549	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 5 of 14)	L1_Rod|LINE|L1	122338.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	4.23180910121773	4.66748660723244	4.64302336685521	4.34333315908786	4.29013481307653	4.20458872955664	4.5853575280868	4.12956808135799	-0.387252888540891	0.336708596077451	0.646629460254283
Merged-chr6-122824674-4	chr6	122824592	122824792	+	816.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021899, intron 1 of 10)	intron (NM_021899, intron 1 of 10)	4508.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	3.63751265891058	3.84443517461704	3.39696695337911	3.62226526385423	3.95724996533504	3.57670570032742	3.82474320612908	3.83908763185639	0.52535741041961	0.273701662306706	0.585380302951494
Merged-chr5-123025434-4	chr5	123025332	123025532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	10358.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	7.08045114117087	7.07567482653516	7.24565670911834	7.20743220937865	6.71675712420803	6.60081330343267	6.84436204757522	7.12254918806424	-0.447414066792637	0.0295562518011381	0.165587126875499
Merged-chr6-129200178-4	chr6	129200053	129200253	+	850.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	19538.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	4.42051273433209	5.31258926679047	5.02889565599839	4.4627034777063	4.2988454820227	4.12421595757686	4.30744645324978	4.46326307129115	-1.23038948462536	0.0046737820450979	0.0452188571684142
Merged-chr2-116980005-4	chr2	116979842	116980042	+	929.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79790.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	3.42826934178976	3.55633623274614	3.36647092585848	3.33808731282985	3.76199261494556	3.71728610791661	3.73398154327504	3.74814371870961	1.03004905028808	0.0290851341140098	0.163980258305038
Merged-chr3-109169302-4	chr3	109169186	109169386	+	794.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172685)	TTS (NM_172685)	46137.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	3.42039986136103	3.49047344911822	3.47692542199378	3.6553469991037	3.43444801307052	3.53432565829005	3.35045648542138	3.52870181691409	-0.207899954148833	0.677994533114464	0.867963917899731
Merged-chr6-50384553-4	chr6	50384463	50384663	+	866.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	ORR1E|LTR|ERVL-MaLR	-1726.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	4.08709943894682	4.65303161612395	4.13914236180066	4.06949570546519	4.60534607219342	4.45565656537293	4.43084457980793	4.08533455349009	0.367262388257706	0.387887938940959	0.688726934413767
Merged-chr5-145140118-4	chr5	145140073	145140273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033313)	promoter-TSS (NM_001033313)	-84.0	NM_001033313	231887.0	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	5.95433825296195	6.00123196846635	5.40912758292584	5.28812859865383	6.02887172186577	6.40781809535088	6.01022935767866	6.41119818704998	0.84532920279705	0.00444344345107898	0.04351078021796
Merged-chr7-80177636-3	chr7	80177544	80177744	+	847.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9197.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	3.24620683055384	3.93992489739139	3.24656534626197	2.82916951881312	4.32346308786248	3.80939197648405	3.72121050111717	3.88145188719187	1.68703773184405	0.00756502325357728	0.0645261581984874
Merged-chr8-46888751-4	chr8	46888608	46888808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98179.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	5.30464911279595	5.08801034950688	6.24488661335242	6.2490061452683	4.92594136270349	4.84509963700542	5.48604328178938	5.59028308985139	-0.987739536250126	0.015891997688278	0.109165846695033
Merged-chr11-103436487-4	chr11	103436392	103436592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-23828.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	5.48094845772568	5.62344482170433	5.14979929150858	5.01331696602412	5.3843707754155	5.54468156566319	5.40035970220795	5.11139922192909	0.0718389716209471	0.821367692788947	0.931627649722857
Merged-chr9-63738220-4	chr9	63738111	63738311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	MTEa|LTR|ERVL-MaLR	19783.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	7.04346551201005	6.96900294813729	6.54903329742499	6.8193274261251	6.85930995507019	6.97656351698736	6.94947807436347	6.7219635560015	0.0296228260507119	0.887522730166318	0.957799052224803
Merged-chr5-105699941-4	chr5	105699843	105700043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178701)	promoter-TSS (NM_178701)	-26.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	7.57974238259518	7.51115794918922	7.20120852479304	7.69781251032638	7.5531656206685	7.57284966330338	7.71975870727588	6.86453868790163	-0.0629797341090863	0.786319510421567	0.916900436294628
Merged-chr11-51921921-4	chr11	51921827	51922027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-45704.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	6.91791151118196	6.86341729698098	6.57683765608255	6.86813408317778	6.98931767254177	6.98700618597856	7.09823435180235	6.86101723887079	0.235258810129131	0.235672407943665	0.545646525172162
Merged-chr5-101999240-4	chr5	101999170	101999370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	70651.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	7.12546436224842	7.03204750604661	7.26127317739946	7.4262098444721	6.38059086940122	6.60779925824363	6.3372949873686	6.46114524210358	-1.10751145801356	1.38112648858173e-07	5.74895920062917e-06
Merged-chr6-134035254-4	chr6	134035162	134035362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007961)	promoter-TSS (NM_007961)	-438.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	7.79233634661585	8.15933326710324	7.83792790264962	7.39429074467557	7.63905760551181	7.76765939494894	7.42284556954678	7.08051966836294	-0.414289512760056	0.0770669805680191	0.300150503931442
Merged-chr8-116967364-2	chr8	116967264	116967464	+	679.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	11289.0	NM_001357254	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	3.25852172665655	3.63306913127123	3.19570190695076	3.02693980631994	3.24611606304778	3.49281333727559	3.36367385507712	3.58287754503087	0.45844711214732	0.41326688939804	0.708282525004032
Merged-chr11-52003727-4	chr11	52003638	52003838	+	805.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153785)	promoter-TSS (NM_153785)	-483.0	NM_001166657	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	4.20083030460861	4.12745331732647	3.76276142705657	3.51254666896646	4.12799711160689	4.0494211495414	3.95919360463324	4.11351246485635	0.394920670692115	0.401819254717013	0.699361618043386
Merged-chr8-85560127-4	chr8	85560039	85560239	+	853.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-4868.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	4.0411427961381	4.11930551836818	3.83110744421141	3.9595708358478	4.0726259263186	4.21391572989514	4.28433420310259	4.13294162356901	0.477471505908585	0.243594711440298	0.554650479735382
Merged-chr17-35257595-4	chr17	35257497	35257697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-5497.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	5.69057773499286	5.94947735910054	5.51954853399802	5.52093507596803	6.14558283262482	5.94634554757401	5.96916756950139	6.35807973937203	0.706524901365056	0.00722703038973434	0.0623379539639967
Merged-chr2-18681112-4	chr2	18680990	18681190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007552, intron 1 of 9)	CpG	4072.0	NM_007552	12151.0	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	6.23194883444027	6.65776939366233	6.02859200487215	6.48544878803758	6.96424419635518	6.81883713523109	6.59342191379747	6.9579325712402	0.661113966059659	0.00546588588034374	0.0507178061630801
Merged-chr7-80370812-4	chr7	80370736	80370936	+	946.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172903, exon 2 of 24)	5' UTR (NM_172903, exon 2 of 24)	539.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	4.65953588389999	4.15767465711777	4.54712742001191	4.30967286268967	4.40450519024742	4.50848460026092	4.5258739953516	4.6927003006002	0.255275095658359	0.502053974798435	0.769457185302407
Merged-chr19-59026002-8	chr19	59026007	59026207	+	868.0520630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 8 of 16)	intron (NM_001114312, intron 8 of 16)	49962.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	4.07068558271219	3.81889737526711	4.11482011847947	3.59685389687107	3.67013517305295	4.05453049597708	4.0528107050401	3.92877997016833	0.0747178995966395	0.873907010590223	0.952744110383191
Merged-chr3-96708506-4	chr3	96708420	96708620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030094)	promoter-TSS (NM_030094)	40.0	NM_001162925	78373.0	Mm.423186	NM_030094	ENSMUSG00000028100	Nudt17	2410015C20Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 17	protein-coding	5.30635545003697	5.27561336892437	5.36781376454422	5.23330307125073	5.38015942465313	5.41965441514062	5.67406144686466	5.50373990202662	0.363868528352198	0.189403993672332	0.488251009184518
Merged-chr6-126849136-4	chr6	126849053	126849253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025358)	promoter-TSS (NM_025358)	-9.0	NM_025358	66108.0	Mm.29939	NM_025358	ENSMUSG00000000399	Ndufa9	1010001N11Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9	protein-coding	6.18245118979555	6.25687996773214	6.18354318914959	6.22784407906174	6.58941346181569	6.41957603029064	6.17210589596521	6.56333352446207	0.355189140961891	0.114563965725179	0.374405349694788
Merged-chr1-132343831-4	chr1	132343734	132343934	+	880.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24114.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	3.87501583030595	4.27501434282647	4.1245391254765	3.91525995675342	4.33586374383917	3.68793241346908	4.01346528377486	4.29100210689843	0.160154672112419	0.727076141532003	0.89133085313418
Merged-chr15-84987378-5	chr15	84987285	84987485	+	960.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	586.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	4.73706299575709	4.85433307197155	4.85222905747567	5.01254116273929	5.00969632143168	4.8312070999434	4.89971737477448	4.88501911778288	0.0645966516274185	0.841776221635636	0.93994803474123
Merged-chr11-118230150-4	chr11	118230045	118230245	+	984.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-17403.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	4.75490410915528	4.76009260243542	5.85010586382893	5.67357104674696	4.74156185137019	4.50356055992473	4.73322234177187	5.0529050946711	-1.12294930027708	0.00796233415085986	0.0669760083342064
Merged-chr3-31414138-4	chr3	31414126	31414326	+	962.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103907.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	5.03648955646467	4.6209904498405	5.43075045176593	4.97597251533398	4.79884521649727	4.38592673653528	4.7012618100605	4.35940669262877	-0.942865018983915	0.0161112550949376	0.110172257316031
Merged-chr5-105531157-3	chr5	105531063	105531263	+	781.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 1 of 3)	intron (NM_133897, intron 1 of 3)	11692.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	3.93812516230875	4.26016084052012	4.18410387923368	3.42053780805023	3.44156899351376	3.43363308853342	3.5626521636929	3.45027134551028	-1.59144790037081	0.00398462794500194	0.0399467369714497
Merged-chr14-54754128-4	chr14	54754038	54754238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	27748.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	5.70090623508848	5.73339400757998	5.41437103021681	5.78168230101039	6.01899623316897	5.77139818252988	5.67305902398069	6.16511778632834	0.407374122118012	0.131083402604867	0.403040410972433
Merged-chr2-77327992-3	chr2	77327882	77328082	+	658.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-47390.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	3.54870375279765	3.65800888684594	3.98843993102782	3.54437010011546	3.45594287979391	3.54351788694466	3.74713552731449	3.85582450778428	-0.103954508448901	0.834709188348719	0.93702217921481
Merged-chr6-128143168-2	chr6	128143068	128143268	+	869.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	410.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	3.95764860013048	3.76090036537164	4.14642425237857	3.94180985890735	4.1335969567672	4.17983555478194	3.89074632762048	4.22826235911638	0.423646313041135	0.318814667805118	0.630681561032378
Merged-chr6-97421877-3	chr6	97421785	97421985	+	920.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 3 of 23)	intron (NM_145148, intron 3 of 23)	37401.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.78850574626008	3.5964448850561	3.97133223805195	3.67098261594521	3.51370694670879	3.69350876129761	3.67220158316956	3.73689874461312	-0.323972370453593	0.494884315812385	0.765380871135718
Merged-chr11-83224927-3	chr11	83224826	83225026	+	846.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015519, intron 3 of 3)	RMER17C|LTR|ERVK	1350.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	3.66402042362102	3.43091253872232	3.22003784808081	3.27310391147491	3.60973352748459	3.78035978157168	3.391606965453	3.34363491796478	0.482208344986294	0.362456044951144	0.667648124413267
Merged-chr5-140649148-4	chr5	140649045	140649245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175274)	promoter-TSS (NM_175274)	-114.0	NM_175274	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	7.82432320606758	7.91920042803818	7.37290057899492	7.46430862504311	7.91644084035362	7.81889107825553	7.98637076484495	7.6011689297404	0.233198783660464	0.247026512152216	0.558168726560377
Merged-chr18-62726791-3	chr18	62726691	62726891	+	827.027771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168423, intron 1 of 4)	MTEb|LTR|ERVL-MaLR	14596.0	NM_001168423	100038417.0	Mm.387557	NM_001168423	ENSMUSG00000073551	Spink13	Gm10534|Spink5l3	serine peptidase inhibitor, Kazal type 13	protein-coding	3.81793235113119	3.39894046631264	3.70113426865193	3.82071842101448	4.23583735881643	4.05131356530206	4.44550112896561	4.39540099450236	1.55788662885704	0.000746879855495448	0.0106601486333087
Merged-chr11-75532585-3	chr11	75532496	75532696	+	829.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173388, exon 2 of 14)	5' UTR (NM_173388, exon 2 of 14)	484.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	2.79487812155909	2.85439152600715	3.06793736878668	3.06238931138074	3.19355887147783	3.35475036450213	3.0569434605076	3.39128916844657	1.15604956760614	0.0516843699314372	0.236338286480134
Merged-chr16-90312510-4	chr16	90312401	90312601	+	995.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-27998.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	5.25463689099475	5.63643157925242	5.11429200203994	5.27800025776854	5.43341071022932	5.82779855969367	5.6260440565824	5.78946259228738	0.573077079227834	0.0502517873913467	0.232536209512981
Merged-chr16-55838845-4	chr16	55838771	55838971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030612)	promoter-TSS (NM_030612)	-230.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	8.05723723756315	8.53426240175255	7.87955403840991	7.1352972353192	8.3080543920425	8.52231549386847	7.94749622894712	7.08787399385414	0.0929059163105958	0.857087237446848	0.94616653253742
Merged-chr6-121338325-4	chr6	121338234	121338434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_144512)	TTS (NM_144512)	-4742.0	NM_001347433	14411.0	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	5.4148644831874	5.37259116039799	5.32153925171206	5.25997044503771	5.64012461094692	5.78662675178634	6.10320082258652	5.65892336752789	0.798211977218897	0.00364841000717175	0.0372475869048305
Merged-chr9-102633151-4	chr9	102633048	102633248	+	673.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181394, intron 2 of 2)	intron (NM_181394, intron 2 of 2)	6852.0	NM_181394	69010.0	Mm.2000	NM_181394	ENSMUSG00000035048	Anapc13	1810004D07Rik|APC13|SWM1	anaphase promoting complex subunit 13	protein-coding	3.40926088243122	3.99094878462554	3.91973820260562	3.97452064888491	3.86982845639669	3.83552179784307	3.64712311742832	3.96333127062389	-0.0493186155392251	0.919276259315998	0.970285021467879
Merged-chr4-132074215-3	chr4	132074129	132074329	+	882.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128607, intron 1 of 17)	intron (NM_001128607, intron 1 of 17)	1084.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	3.62433812254533	3.12332820857399	3.57400015244731	3.37361833135309	3.29315798600436	3.63887825713598	3.33572784152786	3.80756270734281	0.328207793720419	0.549345041847103	0.79798967011526
Merged-chr8-104376223-2	chr8	104376123	104376323	+	627.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	ID_B1|SINE|B4	19584.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	2.98254546459158	3.15816734412108	2.91428922887036	3.36229943649039	3.07710242452127	3.39315059019376	3.21368846298518	3.10872126018532	0.270286310907217	0.651311612837457	0.853894409112639
Merged-chr11-117344562-3	chr11	117344467	117344667	+	975.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113488, intron 1 of 9)	intron (NM_001113488, intron 1 of 9)	12254.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	4.03436768616613	4.5547922659367	4.49895381364947	4.55120703281477	4.13536200962584	3.81033942577374	3.80017228743695	3.81236946475569	-1.35451341070059	0.00302193896963184	0.0321666807117429
Merged-chr16-22461181-4	chr16	22461077	22461277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21607.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	5.87051975693632	5.2566645867122	5.56737774695757	5.46714909509962	5.25277465542411	5.79283329734933	5.59075634990044	5.42374092632428	-0.0521351905851988	0.863272641988322	0.948573763987243
Merged-chr9-111119385-4	chr9	111119287	111119487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027742, intron 1 of 13)	intron (NM_027742, intron 1 of 13)	1276.0	NM_001164838	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	7.27869884192154	7.78429570462345	6.89986060453638	6.66655130163425	7.16459911856276	7.20881621919318	6.97074703576961	6.8810275423556	-0.221739337632257	0.415439194294075	0.709704469127297
Merged-chr16-35947133-4	chr16	35947026	35947226	+	908.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030253, intron 3 of 10)	intron (NM_030253, intron 3 of 10)	-8099.0	NM_001013371	209200.0	Mm.390852	NM_001013371	ENSMUSG00000049502	Dtx3l	AU042200|BC023741	deltex 3-like, E3 ubiquitin ligase	protein-coding	4.24389050023385	4.23068989725381	3.6604110859076	4.00140000360205	4.70032059044688	4.55349852243292	4.48065172835247	4.77687855505961	1.3690627425724	0.000850873680322121	0.0118210411699812
Merged-chr13-23369241-4	chr13	23369100	23369300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172586)	promoter-TSS (NM_172586)	8.0	NM_001286156	218100.0	Mm.286454	NM_172586	ENSMUSG00000046351	Zfp322a	Znf322|Znf322a	zinc finger protein 322A	protein-coding	7.56003118419194	7.53816411594457	7.85712185212831	7.7167961507218	7.51994481015323	7.46836140299501	7.8471642514013	7.51952440932716	-0.102677139646519	0.579959583870058	0.815517916470182
Merged-chr2-132224483-4	chr2	132224381	132224581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23307.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	7.25927909769711	7.65058718843505	7.3033216066426	7.34910442001819	7.29132164574287	7.19938076175823	7.40565229049623	7.30870301173711	-0.130925096862489	0.486131314430276	0.759873088473826
Merged-chr7-104200013-4	chr7	104199919	104200119	+	806.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9814.0	NM_147055	259057.0	Mm.223438	NM_147055	ENSMUSG00000044899	Olfr649	MOR31-7	olfactory receptor 649	protein-coding	4.11994185395411	3.90733043844648	3.72452494990751	3.77070442869455	3.79669600193061	4.20212238566573	4.14303860479352	3.7225445098462	0.259638621252605	0.572181680220116	0.811128321794733
Merged-chr15-88864035-4	chr15	88863946	88864146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145478, intron 4 of 5)	intron (NM_145478, intron 4 of 5)	1852.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	8.32700412831704	8.56016191781599	8.46918843048542	8.13743628291485	8.4597266085144	8.42624907923692	8.40004464046397	8.19513371879379	-0.0021062827235766	0.990170215105459	0.996117897800711
Merged-chr14-22102559-4	chr14	22102449	22102649	+	788.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 2 of 6)	BLACKJACK|DNA|hAT-Blackjack	82837.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	3.52013092212198	3.76546667888592	4.10306248070695	4.45053239733545	3.52697564713635	3.93907846730737	3.95088434353927	3.91757653224834	-0.488710260866954	0.357068299865124	0.66331987984392
Merged-chr8-69328809-3	chr8	69328710	69328910	+	818.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	57730.0	NM_172491	211135.0	Mm.294970	NM_172491	ENSMUSG00000079038	D130040H23Rik	-	RIKEN cDNA D130040H23 gene	protein-coding	3.48976115618371	3.66412602595831	3.59610871784674	3.36126209315024	3.44634803851677	3.42597159069292	3.36332047148902	3.69104167793663	-0.127420874057184	0.801702694067497	0.923502404690673
Merged-chr19-26606726-4	chr19	26606642	26606842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 1 of 32)	CpG	1582.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	5.90861861857936	5.5478485352251	5.88843486454933	5.56736252001083	5.53966613575236	5.63595244539713	5.5993060983586	5.64975376986823	-0.202429077915029	0.452341453333817	0.736710880167668
Merged-chr2-118972889-4	chr2	118972780	118972980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	46383.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	5.40804543844809	5.55934914417611	5.24014094422545	5.43170903404871	6.27908914679678	5.91715851376756	5.85064168699917	5.8983046203614	0.971859722166238	0.000302206532870653	0.00510459392577129
Merged-chr3-19628222-4	chr3	19628136	19628336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16224.0	NM_001081281	381485.0	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	6.60599289310993	6.54192005840325	6.4904753756651	6.6105401171219	6.64653942882062	7.13993206013677	6.62008036892023	6.75224386195585	0.333660197799055	0.127829580379326	0.397830514705088
Merged-chr5-151686881-4	chr5	151686770	151686970	+	942.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35662.0	NM_027009	69263.0	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	4.00425955391418	4.0575532748489	4.10139136461959	4.12773131463627	4.35445257824177	4.021738680175	4.03693854561233	4.09892447751019	0.17782010579238	0.666263724320787	0.861914264044268
Merged-chr3-58416508-4	chr3	58416422	58416622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081229, exon 1 of 4)	exon (NM_001081229, exon 1 of 4)	1802.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	6.58709103948192	6.85830884788526	6.96486991670788	6.76729502855596	6.89947893654138	6.83141829525347	7.12539311321065	6.98471831144177	0.229435020209556	0.256356871007435	0.567953987843571
Merged-chr7-19416869-2	chr7	19416810	19417010	+	592.0	f0_balb.idr|f1_balb.idr	TTS (NR_073014)	TTS (NR_073014)	4507.0	NR_073014	100503495.0	Mm.410762	NR_073014	ENSMUSG00000040705	A930016O22Rik	-	RIKEN cDNA A930016O22 gene	ncRNA	2.75456416047553	2.71516940738335	2.87249170884611	2.85649039073935	2.43995128790892	2.50696579889576	2.54882384342936	2.92566554078531	-0.930046036028667	0.18695452708647	0.485169763872242
Merged-chr7-118118127-4	chr7	118118019	118118219	+	955.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019419)	TTS (NM_019419)	-1972.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	4.67821191691535	5.09304674360726	4.34895366333859	4.68317188836101	4.98153567355614	5.04567969377868	4.88410673766461	5.12778154874605	0.561573519092267	0.112746038301343	0.371288758709039
Merged-chr12-56428383-2	chr12	56428288	56428488	+	754.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-82494.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	3.5110051517257	3.39941612716766	3.73093282175644	3.6066399668508	3.87899412942509	3.62617492023586	4.02043219588691	3.77833695618026	0.819958796321872	0.0844543154461004	0.31618839254881
Merged-chr6-100480611-3	chr6	100480500	100480700	+	643.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-46800.0	NR_040525	73395.0	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	2.93041127140748	2.82729652643052	3.19644295047076	3.06402521911193	2.5439546037508	2.6226583176756	2.5897895977406	2.98692430934806	-1.52763815873726	0.0301119746462937	0.167631803797007
Merged-chr13-94813990-4	chr13	94813919	94814119	+	968.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009321, intron 1 of 3)	intron (NM_009321, intron 1 of 3)	25076.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	3.68260036199658	4.14647902970787	3.84590639499849	3.55296623535736	4.07472757911631	4.01800801403085	3.72496685383931	3.84366968364806	0.301784516412438	0.526697659465578	0.783895717785684
Merged-chr16-18052845-4	chr16	18052730	18052930	+	818.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010047)	promoter-TSS (NM_010047)	-30.0	NM_010047	13353.0	Mm.27155	NM_010047	ENSMUSG00000003531	Dgcr6	-	DiGeorge syndrome critical region gene 6	protein-coding	4.11426639284873	4.17872473825803	4.06720659663047	4.00447742712017	4.1191846511467	4.19142382121551	4.38518734139972	3.91054907454662	0.191194170912777	0.643331903417104	0.849604094409455
Merged-chr3-126771751-4	chr3	126771641	126771841	+	996.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 6 of 18)	intron (NM_001025438, intron 6 of 18)	171645.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	4.89412038829341	4.8025947284952	4.57118283741596	4.78268832919309	4.86825841971447	4.95797262829403	5.1272645625064	5.17818445801516	0.526058274200239	0.106213301542717	0.359169394769779
Merged-chr7-102347555-4	chr7	102347460	102347660	+	966.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 1 of 11)	intron (NM_009287, intron 1 of 11)	79736.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	5.23184314872536	5.04970493520688	4.87477307651359	5.21802910416581	5.39469506297379	4.92863810531487	5.48391878894686	5.71472872543002	0.551046902630055	0.0900602133486687	0.327685679456839
Merged-chr6-40479919-4	chr6	40479821	40480021	+	882.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212468, intron 6 of 6)	intron (NM_212468, intron 6 of 6)	8453.0	NM_001286663	381760.0	Mm.276356	NM_028358	ENSMUSG00000029911	Ssbp1	2810480P10Rik|G630031O20Rik|MtSSB|mtDBP	single-stranded DNA binding protein 1	protein-coding	3.6984779658486	4.01194498204248	3.86666846235756	3.99196940104671	4.23849204884542	3.75612604559216	3.99793792747579	4.18699232370358	0.429747502726099	0.336909161111009	0.646769375674115
Merged-chr1-106151951-4	chr1	106151853	106152053	+	894.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040630)	TTS (NR_040630)	19571.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	4.84085331653112	4.69230648504267	4.80548100707213	4.78406932143196	4.78555065477872	4.82435543111299	4.85339464291307	4.80230075584657	0.0716732981668483	0.824792790347846	0.932789825291069
Merged-chr19-42520036-4	chr19	42519933	42520133	+	842.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177464, intron 1 of 6)	B4|SINE|B4	1228.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	4.51264745376478	4.03834501904565	4.1505804564423	4.45816741224463	4.41720725131741	4.5187114802154	4.49227420373237	4.76003483645606	0.539465409984368	0.171727081954477	0.465087374685055
Merged-chr7-141070263-4	chr7	141070162	141070362	+	777.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177897, intron 14 of 19)	intron (NM_177897, intron 14 of 19)	-7967.0	NM_001162924	56460.0	Mm.350037	NM_019762	ENSMUSG00000054065	Pkp3	2310056L12Rik	plakophilin 3	protein-coding	3.58587408957609	3.88487434350779	3.64261547172219	3.64764791415947	3.67171333100645	3.70317915653521	3.68175342062468	3.934147610737	0.165827823980704	0.721665913756189	0.888884104579521
Merged-chr11-103246523-4	chr11	103246416	103246616	+	951.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	20885.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	4.63242458603735	4.74752064103256	5.23834517742716	5.08595049906454	4.71419519614427	5.00555585762629	4.56880497045478	4.79157984768295	-0.365399742398845	0.30796596971336	0.620350627072313
Merged-chr13-95848110-3	chr13	95848013	95848213	+	935.511108	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	Lx8|LINE|L1	43809.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.69844359997052	3.31256168530059	3.7631539535821	3.60873774850165	4.89046645342289	4.53753340096224	4.45646014552833	4.47594853799405	2.59027971460053	2.02323424706323e-08	1.01586605481182e-06
Merged-chr7-99917617-4	chr7	99917513	99917713	+	787.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164258, exon 19 of 19)	exon (NM_001164258, exon 19 of 19)	58395.0	NM_001164258	446101.0	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	2.76260042219126	2.80880155823461	2.87720163431357	2.43326044081355	2.47034983085297	2.67650118410076	2.49222290205529	2.5690500351478	-0.902813618454051	0.202931397985408	0.505510393266723
Merged-chr19-3907068-4	chr19	3906969	3907169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167784)	promoter-TSS (NM_001167784)	64.0	NM_001136091	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	6.57769532624066	6.81327039380356	6.4944493580118	6.32476026445946	6.76233200135731	6.86452110831892	6.95700159893034	6.71306461637772	0.388093725536461	0.0755775076886406	0.296959388550724
Merged-chr11-20249508-4	chr11	20249415	20249615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172260)	promoter-TSS (NM_172260)	-91.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	8.26043927656098	8.07463133444575	7.88401917667094	8.23404014576102	8.27396805795617	8.13545739905535	8.28309940647859	8.01539273041981	0.0741145583333443	0.665688913130111	0.861582866462235
Merged-chr1-74713850-7	chr1	74713766	74713966	+	844.6904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024264, exon 1 of 9)	exon (NM_024264, exon 1 of 9)	331.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	3.46224189628477	3.28922067666676	3.34662802377354	3.70996473927994	3.18771684338299	3.5205099293971	3.55435856564628	3.66523876594451	0.0476728709614932	0.930108709838867	0.97473804266226
Merged-chr18-77714038-4	chr18	77713923	77714123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178670)	promoter-TSS (NM_178670)	-13.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	7.34300006189857	7.43242261860786	7.01603430484254	7.52077736754517	7.28665892380898	6.95302779579576	7.1934813541996	7.11049397659931	-0.276431088518439	0.173307449560296	0.467355595842102
Merged-chr8-83425458-4	chr8	83425356	83425556	+	925.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009904, intron 13 of 14)	intron (NM_009904, intron 13 of 14)	17206.0	NM_001285992	56367.0	Mm.246911	NM_019708	ENSMUSG00000063253	Scoc	0610011C06Rik|2810002J11Rik|AA415030|SCOCO	short coiled-coil protein	protein-coding	4.94919938155614	4.66392543009912	5.13446159967085	5.19225753422685	4.37632891638481	4.74472704088873	4.7871136502858	4.60746497267966	-0.790419261473808	0.0283231960833677	0.161277137273186
Merged-chr1-80659651-4	chr1	80659561	80659761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	5691.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	5.72158884833588	5.63669028728254	5.54676412973447	5.40225853681126	5.56871052245695	5.48768062896297	5.25178108253386	5.71852468270377	-0.0865012840221248	0.758619082541402	0.905219520105318
Merged-chr7-99381414-4	chr7	99381347	99381547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362166)	promoter-TSS (NM_001362166)	-71.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	8.29632190724779	8.33776091588447	8.16389679072292	7.88804338284246	8.37981014678919	8.27859800282004	8.16741261079278	8.13994889666193	0.0921590438811968	0.602403227510511	0.827662913718761
Merged-chr7-75610696-3	chr7	75610614	75610814	+	938.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029332, exon 7 of 37)	exon (NM_029332, exon 7 of 37)	155180.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	3.86523211516149	4.0534458646257	4.13048929824127	3.88913345638901	3.48096176406324	3.71194915636625	3.69496390398461	3.70744312347412	-1.02223733752725	0.0287798668696829	0.162982110264711
Merged-chr7-5061402-7	chr7	5061288	5061488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133671)	promoter-TSS (NM_133671)	-755.0	NM_133671	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	6.43792045823092	6.30443656925245	6.04582511444091	5.72953861975211	6.19986379453918	6.40484935635254	6.0578759452214	6.24397566190435	0.136679414060033	0.608133850417348	0.8303806010247
Merged-chr11-4661587-4	chr11	4661509	4661709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029291, intron 8 of 19)	intron (NM_029291, intron 8 of 19)	23816.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	6.44499890014326	6.40977051522381	6.57873056664864	6.56729659893065	6.77948060444593	6.26496866479038	6.46433316353929	6.80231764704129	0.1475694288057	0.517773658500716	0.779051963523843
Merged-chr8-35466895-3	chr8	35466773	35466973	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026067, exon 7 of 7)	3' UTR (NM_026067, exon 7 of 7)	28660.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	6.46913596327148	6.27884422907353	6.9989968106632	6.87888138596605	4.69727423841177	4.46570790892064	4.42505656335953	4.67531391129284	-3.82671442419533	8.81832767463455e-25	5.41103228924839e-22
Merged-chr2-62645612-4	chr2	62645517	62645717	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027835, exon 1 of 16)	exon (NM_027835, exon 1 of 16)	638.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	5.23049035225155	5.80549193511338	5.13592467523886	4.76343745985343	5.00616686224158	5.24445086318194	5.1429695091215	5.02935369870949	-0.330961101153782	0.365336899202403	0.670036077799093
Merged-chr9-88439057-4	chr9	88438960	88439160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172926)	promoter-TSS (NM_172926)	-109.0	NM_172926	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	8.79316242836989	8.92663544215496	9.06181329188807	8.98650432362438	8.70150591375108	8.68910605974847	9.00509097567238	8.70454113307013	-0.20583177689617	0.189365718760841	0.488240753999997
Merged-chr3-107134646-4	chr3	107134560	107134760	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	33093.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	5.75964098920441	5.40069057490809	5.15046247097936	4.80933812669643	5.60428214165298	5.63904044470506	5.73099527655075	5.24928369256528	0.44910456366277	0.187467275658884	0.485862700776423
Merged-chr12-69724900-4	chr12	69724774	69724974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145443)	promoter-TSS (NM_145443)	0.0	NM_145443	217666.0	Mm.103362	NM_145443	ENSMUSG00000020988	L2hgdh	BC016226	L-2-hydroxyglutarate dehydrogenase	protein-coding	7.99681157257297	7.75964079480834	7.84302373963702	8.07972087447469	7.72524716543829	7.86046169603851	7.96645996472973	7.75238021832426	-0.136745557657418	0.42924632456929	0.720143399871997
Merged-chr11-120457193-4	chr11	120457154	120457354	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152807)	promoter-TSS (NM_152807)	816.0	NM_001356385	66431.0	Mm.45063	NM_025560	ENSMUSG00000039670	Oxld1	1810049H13Rik	oxidoreductase like domain containing 1	protein-coding	4.97640614380917	4.56761932169166	4.81396639899725	4.58478610687172	4.79909907322193	4.67508292536459	4.38733393264918	4.66302847535576	-0.188221699485469	0.604355130178897	0.828468411736455
Merged-chr2-4919494-3	chr2	4919444	4919644	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010726, intron 1 of 8)	intron (NM_010726, intron 1 of 8)	548.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	5.32918797889514	5.25921222627337	5.25502350298837	5.22351656680972	3.88779756152092	4.26674230833212	3.99091693005319	4.40316731918373	-2.5816265625753	9.36314735870603e-11	7.20496719832796e-09
Merged-chr14-119007542-4	chr14	119007417	119007617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081252, intron 33 of 38)	ORR1D2|LTR|ERVL-MaLR	69585.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	8.68720520422865	8.62271554959232	8.55063860872775	8.80065112748777	8.67291481706441	8.66861114882748	9.04721472706043	8.63875378563107	0.119376940416639	0.472503998051527	0.750655344998429
Merged-chr19-45149974-3	chr19	45149910	45150110	+	826.544434	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021901)	promoter-TSS (NM_021901)	-705.0	NM_021901	21908.0	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	2.85818296336881	2.97347103324643	2.93244973516914	2.99286323693514	3.56109358277802	3.2463332653617	3.34667780773684	3.55198646323993	1.85978268544899	0.00122467729271382	0.0158205635241519
Merged-chr5-120777707-4	chr5	120777616	120777816	+	982.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145226)	promoter-TSS (NM_145226)	-57.0	NM_145226	246727.0	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	5.67498332751282	5.31756021581651	5.01235014110147	5.61838932163112	5.45078364880244	5.37348073845405	5.55016764116308	5.49597758004907	0.0436275133765862	0.885033876398362	0.956874402493492
Merged-chr15-83128200-4	chr15	83128097	83128297	+	975.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 7 of 7)	intron (NM_001347082, intron 7 of 7)	-5396.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	5.05634762062614	5.37176619332146	4.89340737381527	5.33870264272869	6.04067035614876	5.54161335476444	5.63358706610783	5.77338474432212	0.988026544073062	0.00120032529556846	0.0155738159338803
Merged-chr8-73352780-5	chr8	73352726	73352926	+	881.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010687, exon 1 of 15)	5' UTR (NM_010687, exon 1 of 15)	714.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	4.27934400876345	4.43569290311854	4.45373160214578	4.54848577849496	4.16842681440619	4.62403183648628	4.21456874971353	4.36706322100601	-0.223299702138205	0.566039399372713	0.807783748011785
Merged-chr6-72107149-4	chr6	72107050	72107250	+	905.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	9542.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	4.31383351231034	4.74487457700534	4.6881320668687	4.91978333405933	4.33888180183655	4.34251512212643	4.19713771204254	4.64854376898897	-0.692717422772774	0.0787850101463033	0.303750310757433
Merged-chr5-122269386-4	chr5	122269296	122269496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4936.0	NM_001039153	654470.0	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	5.64558985267446	6.03623339011224	5.87541971757712	5.78470295124157	6.05485547134026	5.85129627909198	6.01812346986822	6.00356392676453	0.234172967392772	0.343382211704622	0.652082726193224
Merged-chr7-74693248-3	chr7	74693115	74693315	+	727.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	-138435.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	3.45205839978511	3.03525689950007	3.98449841059287	3.36333937729147	3.46301244865854	3.98402292706183	3.60525471309297	3.3896472089404	0.397587411476468	0.508155492490542	0.773376095844373
Merged-chr1-162625505-4	chr1	162625357	162625557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13693.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	6.45811583038452	6.49985156628751	6.55981395712877	6.71836097749411	6.68565478176265	6.46896890267857	6.61911421277621	6.61799044371905	0.043769411860023	0.835272491159938	0.937285789387356
Merged-chr6-131353738-4	chr6	131353642	131353842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34708.0	NM_139117	56449.0	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	5.80432018401564	5.8066918204349	5.83018635120594	6.23913986210735	5.81029033605499	6.0306907296141	6.08404872069756	6.20537991330437	0.122425507232376	0.645505376871275	0.850934142345746
Merged-chr2-73206169-3	chr2	73206071	73206271	+	816.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030091, intron 2 of 7)	intron (NM_030091, intron 2 of 7)	8276.0	NM_030091	67059.0	Mm.22661	NM_025942	ENSMUSG00000027108	Ola1	2510025G09Rik|2810405J23Rik|2810409H07Rik|Gtpbp9|PTD004	Obg-like ATPase 1	protein-coding	3.52056854236478	3.62902784829712	3.63049102883967	3.6870521588774	3.61149162648117	3.57661468526399	3.61604882469637	3.72908761767634	0.0312339100354977	0.946996886073479	0.981023220226121
Merged-chr6-72144816-3	chr6	72144698	72144898	+	756.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 4 of 6)	intron (NM_001035228, intron 4 of 6)	-21601.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	3.23997822279448	3.02069434820849	3.2953205760829	3.1349200817476	2.94451886236706	3.03384772392234	3.33370939040184	3.34595637758875	-0.000569800781149729	0.999210216860208	0.999589386466898
Merged-chr2-19059487-4	chr2	19059386	19059586	+	997.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	61167.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	5.33318148158273	5.03483543533541	5.15575419328785	5.21508988505351	4.9791615007845	4.96818393118911	5.16174982431172	5.30237207985306	-0.156134240279432	0.609846398925345	0.831308047964887
Merged-chr3-104675500-3	chr3	104675383	104675583	+	940.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36819.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	3.66230685936413	4.08065215060818	3.76534044758251	3.76307830620662	3.42459110962025	3.78159284778666	3.59423735478916	3.29520810465751	-0.931817105006377	0.0681794615339244	0.278745752988085
Merged-chr12-80815609-4	chr12	80815479	80815679	+	878.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	25047.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	3.69824225140633	3.63743489718254	3.42576306391669	3.42030616963595	3.87029943948067	3.2706476301055	3.41353353577376	3.87905007243686	0.303602575550509	0.56919893397321	0.809345191100084
Merged-chr10-77606135-4	chr10	77606033	77606233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_125904)	promoter-TSS (NR_125904)	36.0	NM_019929	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	6.57717659648766	6.87032126412852	6.07410702592321	6.05908174518051	6.84807938875795	7.05153528989319	6.73626561946767	6.47381876107868	0.514628485051704	0.0602373311267774	0.259134110496367
Merged-chr12-36035809-3	chr12	36035690	36035890	+	851.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	6688.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	3.4802002980137	3.48465626352089	3.89689276085601	4.02469053921608	2.88437049888579	3.14379065902086	3.16437266859968	3.24006935051342	-2.50237144672824	7.39790877606498e-05	0.00157280689597231
Merged-chr8-71654736-4	chr8	71654620	71654820	+	780.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 15 of 41)	intron (NM_001029873, intron 15 of 41)	17037.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	3.84165090146198	3.78173974512419	3.84220870567053	3.43194347960575	3.78322674307478	3.91145318486553	4.05813737934434	4.19669260757545	0.780653686901537	0.0939578983176998	0.335313574547784
Merged-chr9-67845906-3	chr9	67845863	67846063	+	857.4722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177184, intron 1 of 84)	intron (NM_177184, intron 1 of 84)	5567.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	3.85144569087808	3.51926191253394	3.94245887041104	3.96308294377533	3.67756949000474	3.58814724151252	3.63497550857115	3.6471064978195	-0.597313612229806	0.21273614542569	0.517670706102327
Merged-chr7-80640001-4	chr7	80639898	80640098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040343, intron 4 of 4)	intron (NR_040343, intron 4 of 4)	3981.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	7.23780691127914	7.3553853140611	7.31416463273248	7.21887091737359	7.30101197922959	7.47001704712615	7.43376804816376	7.44700550807319	0.175689566305901	0.31489892489728	0.626830096069788
Merged-chr3-109045726-4	chr3	109045608	109045808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18101.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	5.17797662003726	5.64762965841869	5.89080161673731	5.12136544971428	5.48014044979861	5.66553727748798	5.43554824603499	5.40128667849769	0.0189333587409166	0.952868356315869	0.983276598943455
Merged-chr13-58217774-4	chr13	58217666	58217866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-2113.0	NM_026842	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	5.54096791362167	5.57974064893599	5.26691430454489	5.6863963068749	5.82241492446033	5.57305771354542	5.48654921539451	5.78649458000226	0.235647937241593	0.397080771861384	0.695587632228027
Merged-chr2-3425108-3	chr2	3425010	3425210	+	905.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302684, intron 1 of 14)	intron (NM_001302684, intron 1 of 14)	979.0	NM_001302684	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	3.62572066997159	3.3456396122927	3.40490265007706	3.55018041272675	3.90880878774583	3.5190214184734	3.39286704087307	3.62414070868349	0.469122591048698	0.359130827734516	0.665073082746628
Merged-chr12-4082838-4	chr12	4082667	4082867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153082, exon 1 of 7)	5' UTR (NM_153082, exon 1 of 7)	193.0	NM_153082	217378.0	Mm.271656	NM_153082	ENSMUSG00000020657	Dnajc27	AI639580|C330021A05Rik|Rabj|Rbj	DnaJ heat shock protein family (Hsp40) member C27	protein-coding	6.60009823307694	6.9572829958232	6.9193103141853	6.58324478816727	6.49564059625464	6.55549061485775	6.30732276275385	6.44631294310667	-0.45453854119167	0.0404051847915737	0.203097469454445
Merged-chr16-38560114-4	chr16	38560019	38560219	+	820.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205286, intron 1 of 8)	ID_B1|SINE|B4	1421.0	NM_001205286	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	4.34571879036642	4.38620389647226	4.08334982116836	4.04102232524774	3.92798034957252	4.20819247374565	4.20270049968652	3.9799090590523	-0.349895801731991	0.406474803492118	0.702950099801707
Merged-chr1-39846819-2	chr1	39846719	39846919	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040465, intron 1 of 4)	intron (NR_040465, intron 1 of 4)	511.0	NR_040465	73426.0	Mm.396239	NR_040465	ENSMUSG00000101634	1700066B17Rik	-	RIKEN cDNA 1700066B17 gene	ncRNA	3.27927292134332	3.56221625429542	3.40385356381454	2.9538243443286	3.7361891480106	3.45951900658285	3.87292224277542	3.45995418474675	1.12011572876906	0.0431263310292312	0.211309225327297
Merged-chr15-38655392-4	chr15	38655309	38655509	+	841.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6495.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	4.21093901195524	4.33526014374898	4.02989804148448	4.18508253424539	3.9618515767063	3.93999919675616	3.55635787349542	4.29070942283895	-0.612449287118655	0.183476890992119	0.480524748838325
Merged-chr17-36431619-4	chr17	36431520	36431720	+	828.891663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30709.0	NM_177634	224753.0	Mm.246581	NM_177634	ENSMUSG00000048231	H2-M10.4	15H	histocompatibility 2, M region locus 10.4	protein-coding	4.75682436591889	4.48063891839435	4.45086748984323	4.70156117336435	4.18599694389784	4.34185801860976	4.51385123572143	4.75438954845314	-0.33665096514376	0.382587854917896	0.684637549504146
Merged-chr5-5180338-3	chr5	5180236	5180436	+	905.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 5 of 14)	intron (NM_011074, intron 5 of 14)	85732.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	3.69189368088068	3.32235501821987	3.27977577717626	3.80385555236926	3.12681158884564	3.12113646174384	3.32680121364159	3.33750826354456	-1.16402979259008	0.0414359373134933	0.206119825427153
Merged-chr5-144252341-4	chr5	144252233	144252433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163709, intron 1 of 2)	intron (NM_001163709, intron 1 of 2)	-2892.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	7.68485664210249	7.3585075841381	7.37950209304796	7.12658516207771	7.20690790194289	7.16316774209951	6.98903830509594	6.82599139967516	-0.453229641231538	0.0329243597600119	0.178105666743976
Merged-chr4-62667807-4	chr4	62667689	62667889	+	796.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 10 of 15)	L2|LINE|L2	-6185.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	4.57298487518307	4.5371750052249	4.49489078110844	4.15040446711247	4.43671754453986	4.49605302747155	4.58944734800101	4.36395773479393	0.093669035382102	0.806304236637901	0.925407611655474
Merged-chr4-88719031-3	chr4	88718926	88719126	+	862.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172871, exon 1 of 1)	3' UTR (NM_172871, exon 1 of 1)	3482.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	4.15042919895259	4.09761151661122	4.10467628525788	4.86171866413947	3.87402813262877	3.78063945899615	4.13259696192581	3.8421586620006	-1.17551471180973	0.0150315009230238	0.104987459935228
Merged-chr16-33950331-4	chr16	33950223	33950423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010580)	TTS (NM_010580)	16715.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	5.73133029726138	5.6800504513823	5.85237218349587	5.95783943385464	5.62519051232677	5.80368485651738	5.70334621802738	5.99894059905148	-0.0606360790663419	0.815847280291161	0.929064771839766
Merged-chr3-145118601-4	chr3	145118552	145118752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025714)	promoter-TSS (NM_025714)	52.0	NM_025714	52184.0	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding	8.13190285717149	8.17870784874945	8.5591797589079	8.19949119375802	8.02687727521456	8.21317475159453	8.13766842230376	7.99582047553982	-0.232167221110613	0.180286440041077	0.476615404755454
Merged-chr13-29650810-4	chr13	29650778	29650978	+	783.608337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131896, intron 8 of 16)	L1MEc|LINE|L1	204795.0	NR_131896	68916.0	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	4.0044908504455	4.26928131670804	4.47810297159729	3.72606566058043	3.6907248170908	3.9210459743363	3.78323394101086	3.73923523902486	-0.99623296704364	0.0405089468493618	0.203384801283115
Merged-chr2-120564671-4	chr2	120564562	120564762	+	920.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011743)	promoter-TSS (NM_011743)	-803.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	4.36017791174155	4.87146853018924	4.10415111065648	4.21893148181139	4.76846425147702	4.7084336984871	4.63019105963214	4.5325077482631	0.539385953063963	0.17876023167705	0.474686608115678
Merged-chr3-21633979-4	chr3	21633876	21634076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-442676.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.92035071364718	5.45181530902522	6.23008196251717	6.254975674681	5.79129790603318	5.92538763992025	6.25131952391513	6.39574873572452	0.153946279589596	0.609295078794929	0.830965237885955
Merged-chr18-38427219-4	chr18	38427144	38427344	+	857.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	8337.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	4.03774162396465	3.52269713257713	3.65514841630652	3.72058581771608	3.73819405349748	3.45849327887834	3.58452772714448	4.19067761627693	0.0865591296176937	0.867266225711008	0.950313421774078
Merged-chr1-181017487-4	chr1	181017394	181017594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001312918)	promoter-TSS (NM_001312918)	75.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	5.51618015885629	5.93847734443965	6.07675292053873	5.58701081361451	5.75904484039628	5.66507886774392	5.65325928184049	5.67796781171199	-0.161515721044762	0.558375530514358	0.803138364227774
Merged-chr6-108213060-4	chr6	108212959	108213159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010585)	promoter-TSS (NM_010585)	-37.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	8.35027554941534	8.29526033470855	8.24785924770457	8.76302643213519	8.57380071959151	8.38272310115638	8.78108573358184	8.64912997008342	0.206799101583905	0.267635914663389	0.579328430186581
Merged-chr7-46882197-3	chr7	46882100	46882300	+	845.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20937.0	NM_013580	16833.0	Mm.16563	NM_013580	ENSMUSG00000030851	Ldhc	LDH-C4|Ldh-3|Ldh-x|Ldh3|Ldhc4	lactate dehydrogenase C	protein-coding	3.40181325980446	3.44025927747985	3.20653183833221	3.6243922181463	3.73680190055459	3.51710118596371	3.44867091422218	3.97661120301403	0.786052745168162	0.141091410046866	0.417820996660254
Merged-chr15-27662925-4	chr15	27662814	27663014	+	752.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242424, intron 4 of 8)	intron (NM_001242424, intron 4 of 8)	18628.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	3.91397669647715	3.94261779810272	4.06390472112791	4.0454964277488	3.89572768805533	4.18824111759568	3.89867059324053	4.39011955995875	0.28398102251925	0.511976392922568	0.775668292015302
Merged-chr9-56160601-2	chr9	56160501	56160701	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019793, intron 1 of 6)	CpG	469.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	3.81422250705433	3.92468765504216	3.91548751039382	3.94807307770781	3.75142487272553	3.82363921451915	4.03465605893172	3.91318169808802	-0.0711150080240963	0.870542653163557	0.951405771688593
Merged-chr4-10968039-4	chr4	10967919	10968119	+	961.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39600.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	5.55423703728341	5.2239967348871	5.34260971886641	5.52819449321665	5.30422459023772	4.8120086101655	5.34438635418703	5.11822858711801	-0.459673208885092	0.13914936561709	0.414779207473464
Merged-chr15-38278301-4	chr15	38278231	38278431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21569.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	4.75583924815347	5.24471977593575	5.52794875608627	4.95885394379953	5.2854905453904	5.09971968875984	5.34755249090697	5.13222306194945	0.145070854958911	0.662608682703227	0.860115279097678
Merged-chr9-44170174-4	chr9	44170085	44170285	+	769.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 3 of 15)	intron (NM_007619, intron 3 of 15)	35527.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	4.67820175611014	4.54642377850307	4.22272394900804	3.98895380874734	4.24347638135696	4.35103141644988	4.06042022040336	3.66090178457503	-0.678293869893078	0.155306782229506	0.440979076070846
Merged-chr5-72184649-1	chr5	72184549	72184749	+	969.3333130000001	f0_balb.idr	Intergenic	Intergenic	-16460.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	4.11698967524806	4.42450439793011	4.73543482335838	4.66516961848128	4.56432344882265	4.86972182252227	4.35386489717573	4.62265381986045	0.211853511806669	0.59155991306456	0.821657164501079
Merged-chr1-77515204-4	chr1	77515108	77515308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007936)	promoter-TSS (NM_007936)	-120.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	6.23204942115236	6.23929354892147	6.60819189386155	6.42394767705908	5.78166029754843	5.96094349895638	6.4256166365044	5.83001353631644	-0.558208932184616	0.0339221830063792	0.181759538349104
Merged-chr17-44459222-4	chr17	44459125	44459325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamRep564|Unknown|Unknown	270653.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	6.96101171700477	7.21890777392183	7.11068351876091	6.83485102180909	7.31774796368082	7.53954152178336	6.83193487260506	6.88990709238873	0.20039705414825	0.389133718638218	0.689374802932542
Merged-chr5-110135729-4	chr5	110135624	110135824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289580)	promoter-TSS (NM_001289580)	-106.0	NM_172717	231600.0	Mm.30264	NM_172717	ENSMUSG00000014668	Chfr	5730484M20Rik|C230082M18|RNF116	checkpoint with forkhead and ring finger domains	protein-coding	8.42210862265417	8.32469907129087	8.3818736877245	8.3433147395334	8.46990873130651	8.24225407157216	8.44407031739615	8.32792082373426	0.0142170248976928	0.924898568901751	0.972255364423702
Merged-chr4-150548289-3	chr4	150548177	150548377	+	768.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	103897.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	3.41571791698714	3.37039463720069	3.5647002169362	3.94747851704988	2.77908469639068	2.86031101727468	3.04626474403307	3.05464860543925	-2.938513800201	2.78399925896202e-05	0.000680854273527518
Merged-chr6-38861084-3	chr6	38861005	38861205	+	906.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 1 of 14)	B4A|SINE|B4	15085.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	3.3871039588601	3.05688222113673	3.21051440658266	3.71169299891779	3.40929545105477	3.38402648359735	3.3744752288546	3.38572686467162	0.0230048584593764	0.967954517584402	0.98865348920078
Merged-chr9-110352501-4	chr9	110352393	110352593	+	816.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001144, intron 1 of 22)	intron (NM_001001144, intron 1 of 22)	19137.0	NM_001001144	235623.0	Mm.288741	NM_001001144	ENSMUSG00000032485	Scap	9530044G19|mKIAA0199	SREBF chaperone	protein-coding	4.25152333109627	4.11950580416465	4.20649454492578	4.38442535000517	4.50586824705372	4.37873013568302	3.99001216363209	4.29358604177222	0.145654434776678	0.720068108665058	0.888119741205493
Merged-chr9-122957593-3	chr9	122957478	122957678	+	893.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010620, intron 1 of 34)	MLTR14|LTR|ERV1	6497.0	NM_010620	209737.0	Mm.278920	NM_010620	ENSMUSG00000036768	Kif15	3110023M17Rik|3930402I10Rik|D330038N01|HKLP2|Knsl7|b2b1117.1Clo|b2b1117.1aClo	kinesin family member 15	protein-coding	3.54059096681438	3.46104574452762	3.54107315068791	3.14857452548159	3.7840734803473	3.71476457754926	3.58141850723112	3.83809164342837	1.03107796004304	0.0385756824983057	0.197070157507134
Merged-chr7-116476027-3	chr7	116475953	116476153	+	900.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28316.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	4.13079084946681	3.74616136693054	3.9927748403814	3.86415775958315	4.42412356964638	3.84271738583948	4.11283573207971	3.94072406191658	0.473169303601294	0.293612590536259	0.60606822439406
Merged-chr7-135522157-3	chr7	135522054	135522254	+	883.9332890000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178669, intron 1 of 2)	intron (NM_178669, intron 1 of 2)	6500.0	NM_178669	212070.0	Mm.39721	NM_178669	ENSMUSG00000050866	Clrn3	AI649392|Tmem12	clarin 3	protein-coding	3.40903716426489	3.68121725414378	3.8076876517976	3.89812307700812	3.15071358172455	3.33479578363761	3.21156739532476	3.28572505603699	-1.71216091308654	0.00192641922744032	0.0227110577989433
Merged-chr8-83144406-2	chr8	83144298	83144498	+	1000.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-20954.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	4.49970594825474	4.32309008690816	4.56905014083201	4.79084922359709	3.41213447936757	3.6105487360414	3.5476839168331	3.87514679563444	-2.79512170071551	3.91101988774209e-08	1.84347238692923e-06
Merged-chr4-120501896-2	chr4	120501786	120501986	+	637.666626	f0_balb.idr|f1_balb.idr	intron (NM_001355424, intron 7 of 14)	intron (NM_001355424, intron 7 of 14)	-30345.0	NM_177570	194219.0	Mm.29788	NM_177570	ENSMUSG00000047518	Slfnl1	4933406A14Rik	schlafen like 1	protein-coding	2.95195831655341	2.82958868202946	2.898693010567	3.16825430023258	2.25466684385803	2.38377736771758	2.3593577152914	2.44270304261474	-5.11830206853065	6.33913762629127e-06	0.000183420112643003
Merged-chr2-31771396-4	chr2	31771298	31771498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	11225.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	7.42661228436035	7.21229823023952	7.47290713887863	7.42078483901617	6.83394012757698	6.96067753724437	6.93220739958485	6.96251643326841	-0.640414973149859	0.000553549370270433	0.00837608219100323
Merged-chr6-85432023-4	chr6	85431970	85432170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144918)	promoter-TSS (NM_144918)	94.0	NM_144918	232187.0	Mm.219946	NM_144918	ENSMUSG00000033706	Smyd5	AW536703|NN8-4AG|Rai15|Rrg1	SET and MYND domain containing 5	protein-coding	5.70377066946638	5.73089312528378	5.97715550405324	5.29275696631201	5.65090890610437	6.08777401669324	5.84068211779366	5.53897529527751	0.180422798612621	0.545186114221931	0.795786194536872
Merged-chr14-103720809-4	chr14	103720695	103720895	+	933.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21363.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	4.41352288704605	4.48988440933182	4.67108918623496	4.47584938134821	4.20736966328911	4.10727862957197	4.2214292544218	3.98076835226817	-0.918310540922521	0.0200754031917815	0.128375449087037
Merged-chr3-95657326-4	chr3	95657218	95657418	+	831.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1403.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	4.09127600104367	4.1465710907149	3.78741656794849	3.83222869455742	4.0796956401905	4.01869344742704	4.07385290116977	4.08937630749295	0.269704907393536	0.525146535993067	0.783229855070132
Merged-chr11-98948541-4	chr11	98948438	98948638	+	974.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177302, intron 2 of 9)	L1MB8|LINE|L1	8827.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	5.0782649596894	5.15968832082005	5.04674204790325	4.96204847785451	4.99674195965097	4.80275916423271	5.02218157670886	4.86792950251955	-0.247532811505586	0.429901104273473	0.720635978674715
Merged-chr1-36090223-4	chr1	36090124	36090324	+	951.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	21824.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	4.98313903092687	4.90500599988479	4.39775506266635	4.61598636564823	4.41683596507028	4.52846111740387	4.55041417112825	4.29880275490779	-0.643083333272704	0.0902383205730266	0.328009060365002
Merged-chr15-102150896-4	chr15	102150807	102151007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146064, intron 1 of 14)	intron (NM_146064, intron 1 of 14)	332.0	NM_146064	223920.0	Mm.358862	NM_146064	ENSMUSG00000023045	Soat2	ACAT2|D15Wsu97e	sterol O-acyltransferase 2	protein-coding	7.60891246812518	7.03646428325036	7.38674241616003	7.60977862100303	7.11295432544299	7.327851084163	7.06649697854339	7.38161234929105	-0.282957583755903	0.180362277096528	0.476699956238305
Merged-chr13-111868100-4	chr13	111867977	111868177	+	941.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_130345, exon 1 of 3)	non-coding (NR_130345, exon 1 of 3)	141.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	4.32200034472593	4.18200399279201	4.59620675216667	4.30892910181366	4.24778234085022	4.26145462464187	3.95934248391419	4.59308953609783	-0.173005281370043	0.675808820446245	0.866929785285144
Merged-chr7-101028736-4	chr7	101028636	101028836	+	966.3916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16683.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	4.44740168769662	4.48615422467957	4.61417472620032	4.74164244072085	4.68195398838912	4.48473065333059	4.59281219472995	4.68667426676794	0.0585901028177625	0.869415836630097	0.951025031665314
Merged-chr4-134469071-4	chr4	134468962	134469162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019641, intron 1 of 4)	CpG	742.0	NM_019641	16765.0	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	6.89305203469727	6.74361281182614	6.44832326597862	6.34747278101981	6.90495835800682	7.04415283674635	6.85926401992169	6.91497900279893	0.450702219938	0.040950700952467	0.204649999515246
Merged-chr1-173878011-3	chr1	173877855	173878055	+	779.849976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170853, intron 2 of 9)	Lx8b|LINE|L1	2232.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	2.44786344404076	2.51217066932179	2.44818455411996	2.34615904434541	2.15232369009995	2.27496854398355	2.24257069630546	2.2478399262033	-1.36408791017273	0.0768784658731099	0.299715677956916
Merged-chr7-67305120-3	chr7	67305034	67305234	+	680.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 3 of 11)	intron (NM_001357324, intron 3 of 11)	67724.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	3.41071798665575	3.41694984243069	3.46328447036473	3.31271374256274	3.23031898162382	3.41295652451186	3.22942327173007	3.11223408377761	-0.545070562232698	0.306370107015133	0.618852314184407
Merged-chr15-102203214-1	chr15	102203114	102203314	+	1000.0	f0_c57.idr	promoter-TSS (NM_001289694)	promoter-TSS (NM_001289694)	-431.0	NM_001289694	68744.0	Mm.352945	NM_153194	ENSMUSG00000046897	Zfp740	1110034O07Rik|AW548228|Znf740	zinc finger protein 740	protein-coding	5.71872480929879	5.60140865637786	5.71972656367772	5.95917491997377	5.59614719859591	5.50246420977893	5.48135468727728	5.58816454690677	-0.379365570350488	0.155700038178023	0.441501594194625
Merged-chr11-94392931-4	chr11	94392839	94393039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029600)	promoter-TSS (NM_029600)	37.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	5.9469630256164	5.74165422713315	5.9480169939329	6.04160642602878	5.39869946086369	5.56169013940671	5.61647392475126	5.41088047533181	-0.728344697589928	0.00544656883393523	0.0506177468377955
Merged-chr10-34139834-3	chr10	34139772	34139972	+	842.116699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11900.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	4.04011051296878	4.16428351196489	4.26863937506341	4.53851813882006	3.85289727215589	3.82326620442242	4.32904733603306	4.22359960416108	-0.541135538419288	0.230684044932828	0.540202767092188
Merged-chr14-78732842-4	chr14	78732755	78732955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081336)	promoter-TSS (NM_001081336)	-126.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	6.91638287705959	7.01188683488147	6.66591236320532	6.96333466304327	6.60680143082203	6.66071399530788	6.66240085832344	6.61387263878393	-0.381239141761131	0.058997275764439	0.255824982737557
Merged-chr11-54563011-4	chr11	54562921	54563121	+	944.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 5 of 28)	ID_B1|SINE|B4	-33125.0	NM_001252498	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	4.18777735144996	4.17744433633361	4.23494343460325	4.00394066560365	4.34064113683298	4.85669889515118	4.07276943859863	4.03568969894855	0.533520215503797	0.220523042588333	0.528451996377299
Merged-chr1-75559719-3	chr1	75559616	75559816	+	767.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009208)	TTS (NM_009208)	13254.0	NM_001357150	20536.0	Mm.5053	NM_009208	ENSMUSG00000006576	Slc4a3	A930038D23Rik|Ae3	solute carrier family 4 (anion exchanger), member 3	protein-coding	3.60405086688574	3.36790128548295	3.1021423371657	3.0604398703016	3.28538482614388	3.57465228567885	3.2200249919198	3.29023326253584	0.188789578949847	0.73828905293075	0.896701754212797
Merged-chr2-104817001-4	chr2	104816905	104817105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001123327)	promoter-TSS (NM_001123327)	-309.0	NM_001123327	99003.0	Mm.274314	NM_001123327	ENSMUSG00000074994	Qser1	4732486I23Rik|AI502974	glutamine and serine rich 1	protein-coding	7.36317325666886	7.17302829548564	7.47147980331417	7.390928694244	7.37762387940926	7.55163865786943	7.60784695706863	7.42846208533368	0.182464383271344	0.310776565605691	0.622874504793814
Merged-chr11-117783851-4	chr11	117783716	117783916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001195088, exon 4 of 16)	exon (NM_001195088, exon 4 of 16)	1158.0	NM_001195088	217356.0	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	5.78992382513017	5.88747525270245	5.41979318385287	5.86040418396721	5.62107333973952	5.40093381137161	5.45262761699713	5.74007008914368	-0.331212075211657	0.232088035250622	0.541650357752844
Merged-chr1-171442125-4	chr1	171442027	171442227	+	973.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172647, intron 1 of 9)	intron (NM_172647, intron 1 of 9)	4566.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	5.51184468506454	5.30249511561548	5.48652895151623	5.41210359419064	5.38845521005225	5.29718574713635	4.73322341281513	5.65579390424456	-0.204984715316373	0.529478993469778	0.785653226520437
Merged-chr8-46740200-4	chr8	46740090	46740290	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045750)	promoter-TSS (NR_045750)	445.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	4.5695616874481	4.53397138832696	4.49168503590571	4.50546063090142	4.25250651560452	4.13059312727137	4.5488253048031	4.56730089486561	-0.320634430213786	0.396893293634824	0.695498849002515
Merged-chr14-71113413-3	chr14	71113314	71113514	+	975.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-137859.0	NR_046075	100043132.0	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	5.44693568536208	4.6585611091821	5.54921159209029	5.41765641841714	3.26207291477995	3.64386399031719	3.57608242405667	3.88170915621318	-5.48634913429348	2.19927409193027e-07	8.78463134621239e-06
Merged-chr5-30135311-3	chr5	30135208	30135408	+	956.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178878, intron 7 of 19)	MTC|LTR|ERVL-MaLR	19672.0	NM_178878	97212.0	Mm.200497	NM_178878	ENSMUSG00000025745	Hadha	C77020|Mtpa	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit	protein-coding	4.46610813701182	3.92826012491476	4.43010274491179	4.51024064336466	4.37194338101493	3.81568058612643	3.74518293984702	3.98564172401031	-0.854966100030144	0.0749965485519659	0.295465729195793
Merged-chr5-150157938-2	chr5	150157854	150158054	+	715.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101976.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	2.53503571980595	2.27012031350837	2.53530925812795	2.43796431236019	2.75670196595533	2.77412275498827	2.77422933912904	2.66523624552243	1.53701475299025	0.0242181050888621	0.145369909364695
Merged-chr3-137942400-4	chr3	137942318	137942518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	23863.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	6.32965186699387	6.65113597560614	6.00064877422091	5.48656387893291	6.40182550367141	6.3425160177231	5.70062628461746	5.55014149883633	-0.193861476478678	0.584181407083032	0.817552638829506
Merged-chr13-47224075-4	chr13	47224045	47224245	+	976.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 3 of 7)	intron (NM_146042, intron 3 of 7)	30142.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	5.27085450209338	5.33811168345397	4.8949904689439	4.38843189837285	5.84323014882359	5.7574328898364	4.83138408976546	4.67717573116449	0.650212078396434	0.14314133987846	0.421297445881944
Merged-chr13-111686265-4	chr13	111686171	111686371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172593)	promoter-TSS (NM_172593)	93.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	6.25245322400377	6.35479951487815	6.17193537587172	6.63415472723386	6.3156491616104	6.52483479953151	6.71814153710159	6.30698699411745	0.131202015824152	0.588301498644876	0.819675135431917
Merged-chr9-108626615-3	chr9	108626515	108626715	+	885.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151664, intron 3 of 15)	intron (NR_151664, intron 3 of 15)	22793.0	NM_011790	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	3.57183464810329	3.75972413265313	3.7839857028211	3.94184493408826	3.51073656506753	3.85293491326491	3.71883282904719	3.45041242435318	-0.439318729212477	0.36916998807317	0.673491314105063
Merged-chr6-50115955-2	chr6	50115851	50116051	+	590.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001361248, intron 1 of 13)	intron (NM_001361248, intron 1 of 13)	5091.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	3.49958566542524	3.01175200092826	3.54652733706	2.66586524146785	3.27354341616189	3.23272467209863	3.16745094612857	2.91200011242367	-0.298595620742508	0.657748825456443	0.857502173104585
Merged-chr19-46484294-4	chr19	46484195	46484395	+	958.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 11 of 11)	intron (NM_001025391, intron 11 of 11)	-17353.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	4.66539918606163	4.93455796781086	4.58454738392856	4.07189501122237	4.98912291135797	4.84039611305702	4.68275406888852	4.70197984069145	0.476042273971895	0.23092911342282	0.540396396919272
Merged-chr15-8206396-3	chr15	8206284	8206484	+	894.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162906, intron 21 of 52)	L1_Mus2|LINE|L1	37278.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	3.30609678630385	3.24980652601107	3.76619792774369	3.1889914113124	3.52595361984669	3.29066219336222	3.35381376186427	3.6284670366578	0.2355235756187	0.667506880973863	0.862526891994425
Merged-chr14-25377606-1	chr14	25377506	25377706	+	906.0	f0_balb.idr	Intergenic	Intergenic	-81579.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	4.27449650573428	4.21899881717664	4.35074224000068	3.68057291669741	3.70118322372801	3.61743932943322	3.84897130700985	4.06102560501701	-0.911558023719196	0.0645004616545217	0.269936404051458
Merged-chr15-83038249-3	chr15	83038141	83038341	+	583.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4844.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	3.42794669813636	3.55638767767883	3.300552598849	3.35738034316905	3.91654811731311	3.48111774116398	3.68669519523736	3.92549158649959	1.13339586524609	0.0216637859108688	0.13499138731942
Merged-chr4-32239125-1	chr4	32239025	32239225	+	1000.0	f0_c57.idr	Intergenic	CpG	-178310.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	4.78548697470061	4.71845946706269	5.41047901222811	5.01847352898978	4.73419957765994	5.00238999699573	4.98344155480453	5.19288111644104	-0.0549410112404667	0.876249650074075	0.953474391454774
Merged-chr9-111057498-4	chr9	111057412	111057612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302376)	promoter-TSS (NM_001302376)	6.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	8.37254604133352	8.64858198523616	8.5044458830655	8.00769426656097	8.32226432462301	8.42354926441148	8.32420873399826	8.05753836083761	-0.139389979200692	0.471170493172216	0.749734937523649
Merged-chr19-60861441-4	chr19	60861341	60861541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362384)	promoter-TSS (NM_001362384)	-13.0	NM_053198	94281.0	Mm.48179	NM_053198	ENSMUSG00000063698	Sfxn4	-	sideroflexin 4	protein-coding	7.41662710320961	7.31035940903008	7.3366608530944	7.75169115036579	7.34468971438479	7.30996447434883	7.72948204776775	7.57821505957208	0.0285424135233292	0.889293222794045	0.958519732455951
Merged-chr2-91476819-4	chr2	91476737	91476937	+	897.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 10 of 37)	MIRb|SINE|MIR	19306.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	4.74591739366734	4.71331017821843	4.51785671244289	4.7801628142503	4.31187235023334	4.36744676606637	4.41178717167568	4.67183857151303	-0.574513479438954	0.1152011813563	0.375505100872834
Merged-chr19-40693511-4	chr19	40693431	40693631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	33761.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	6.29598350751413	6.46317311240772	6.58655864864351	6.58143996846115	6.27623130757395	6.52936748202636	6.45864548405079	6.19316462751344	-0.189224815986114	0.39634572617754	0.69519327480908
Merged-chr8-40610446-4	chr8	40610322	40610522	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040699, intron 1 of 13)	B3A|SINE|B2	24370.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	5.44141825497665	5.22035999083265	5.97617497653351	6.13997713800114	7.03036734503071	6.51495392686617	7.17036739808468	7.06565198588312	1.77027101330266	1.22366094842361e-08	6.39962987860722e-07
Merged-chr17-86685420-4	chr17	86685239	86685439	+	740.141663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68525.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	3.55944145287309	3.42844589882051	3.39023202085666	3.3103649964419	3.6004014886046	3.82649324635161	3.64630206337308	3.44732698046503	0.725700069142479	0.140150793139345	0.416213336303895
Merged-chr2-153649678-4	chr2	153649659	153649859	+	967.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271744, intron 1 of 22)	CpG	310.0	NM_001271747	13436.0	Mm.89772	NM_010068	ENSMUSG00000027478	Dnmt3b	MmuIIIB	DNA methyltransferase 3B	protein-coding	4.93445120678473	5.06346049798403	5.33911909481541	4.87797351587825	4.51584598457413	4.57686192901926	4.5642064821787	4.86197468344279	-0.875108960621989	0.0128802554490584	0.0944768860890897
Merged-chr11-120041431-1	chr11	120041331	120041531	+	1000.0	f1_balb.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	350.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	3.93089953977919	4.42577136193174	4.08151925338326	3.67050169973362	4.24269760384428	4.20675909349458	4.01613581573955	3.98108602953852	0.182419128897442	0.692331531315976	0.874855389914335
Merged-chr6-125041239-4	chr6	125041155	125041355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133345, intron 1 of 7)	intron (NM_133345, intron 1 of 7)	1407.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	6.98657101303659	7.30673498861286	6.85088431841893	6.90695408279314	7.22888081809565	7.34534165734995	7.30973407497068	7.11793748319902	0.312600771112544	0.117570449179464	0.379250747853942
Merged-chr7-44832305-4	chr7	44832209	44832409	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053074)	TTS (NM_053074)	-3979.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	5.38728858362446	5.58479689210078	5.62482115756339	5.4267428077734	5.66306922721938	5.08389088791708	5.07259770839072	5.16419715846803	-0.380893674396023	0.226045068766663	0.534611308803241
Merged-chr9-37347250-4	chr9	37347144	37347344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081429, intron 2 of 15)	intron (NM_001081429, intron 2 of 15)	1148.0	NM_001081429	245902.0	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	5.02702889224348	4.98093863996632	4.95680065070024	5.02991299642921	5.14893036991587	5.30003479339928	5.0374206805645	5.21634868600449	0.33173074796076	0.267913557043546	0.579735486009685
Merged-chr17-68176964-2	chr17	68176864	68177064	+	836.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96833.0	NM_177278	320858.0	Mm.137356	NM_177278	ENSMUSG00000041565	L3mbtl4	A730037L19Rik|D930040M24Rik	L3MBTL4 histone methyl-lysine binding protein	protein-coding	3.12876382449369	3.1771791393037	2.85705863510706	2.98455958654648	3.25046505657872	3.17715565702705	3.34046927364963	3.4987272888426	1.07015287484179	0.0562578428009782	0.248395074296311
Merged-chr1-153559459-4	chr1	153559380	153559580	+	717.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9766.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	3.73242861957677	3.71878406196278	3.38354545362296	3.46996538678863	3.92751396662349	3.85251884538006	3.6122778053488	3.87539150674852	0.746710305313513	0.115952854724725	0.376746786372172
Merged-chr11-62731852-4	chr11	62731751	62731951	+	932.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2758.0	NM_133208	170740.0	Mm.339982	NM_133208	ENSMUSG00000005267	Zfp287	B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74	zinc finger protein 287	protein-coding	4.53455880957997	4.64482748284997	4.72913502251244	4.59207284772867	4.42163720191353	4.33181133411349	4.55534112725855	4.95486949754011	-0.0855981569007016	0.818673897981263	0.930475502974644
Merged-chr5-147748197-4	chr5	147748082	147748282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22194.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	7.66586098780245	7.64012528775233	7.89707255305554	7.43715339396717	7.31738672928134	7.6779741505238	7.4915572477564	7.43834729540939	-0.238170847709826	0.215023304858957	0.521008436021096
Merged-chr18-20735601-3	chr18	20735493	20735693	+	929.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	10811.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	3.99881829915799	4.03257211503657	3.79784953932206	4.23102750949313	3.91785084528265	3.91731389707382	3.98220432866879	3.68218467654795	-0.43406345582929	0.334205166796127	0.644805241742718
Merged-chr10-80935534-4	chr10	80935464	80935664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5473.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	7.11880591838822	7.30813958508743	6.76733023955425	6.50011016467281	7.2417275412143	7.36310146561789	7.25363167255533	6.43814170925235	0.230265406291995	0.407726456390052	0.703911157055426
Merged-chr10-128140664-2	chr10	128140564	128140764	+	876.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039080, intron 6 of 13)	B1_Mus2|SINE|Alu	35904.0	NM_019711	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	2.87679824376557	2.83502097089121	3.04602310558146	2.87681895629136	2.82653503589476	2.712578748172	2.98070611950943	2.68113388554088	-0.467094088818248	0.457330683336794	0.740448575147958
Merged-chr12-24735321-3	chr12	24735236	24735436	+	794.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	27082.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	3.48756564425985	3.77478824711747	3.85417348994691	4.12610283285216	3.42168278100646	3.54136221464514	3.7437711678758	3.35991107205281	-1.00410366043155	0.0552971750251477	0.245892273450052
Merged-chr18-82910605-4	chr18	82910511	82910711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183033)	promoter-TSS (NM_183033)	-268.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	6.55392780016851	7.06430274854876	6.85840366286944	6.86590837749928	6.81902856934828	7.0074806623646	6.9016181787449	6.53316016368795	-0.0380808508616317	0.862389736118597	0.948130778673016
Merged-chr7-25626115-2	chr7	25626015	25626215	+	877.6666869999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025504)	TTS (NM_025504)	-1509.0	NM_001036740	232984.0	Mm.192369	NM_146184	ENSMUSG00000059479	B3gnt8	B3galt7|B7galt7|BC025206	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding	3.09911120574512	3.12561558414627	3.0995463366924	2.45396230108856	3.35065394111048	2.73030312333008	3.02909873390337	2.97791361550407	0.242430904988139	0.737376453922	0.896392006995728
Merged-chr7-27488089-4	chr7	27488003	27488203	+	879.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018820, intron 1 of 1)	intron (NM_018820, intron 1 of 1)	1150.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	4.11355847683905	4.15260800809332	4.11416984608712	3.74932857732333	4.29565735957125	4.19003817209959	4.54160208135134	4.41542424321676	0.859383705175075	0.037109776233689	0.192122121366334
Merged-chr9-72111901-4	chr9	72111789	72111989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253862)	promoter-TSS (NM_001253862)	-70.0	NM_011544	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	6.59018561830582	6.56075901050914	6.22871724921401	6.23318184482319	6.85611446483888	6.70311668522918	6.79935327985257	6.64810592402299	0.512893692982093	0.0187904786796647	0.12275820153453
Merged-chr19-5023767-5	chr19	5023703	5023903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007854)	promoter-TSS (NM_007854)	-203.0	NM_007854	13340.0	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	6.33796946716412	6.87932093517829	6.33909610089397	5.80401101289016	6.34971664205068	6.00200838446896	6.13716696090487	5.96785740572036	-0.394474748328219	0.188222618978603	0.486827681550797
Merged-chr7-4510031-4	chr7	4509922	4510122	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011618, exon 8 of 14)	exon (NM_011618, exon 8 of 14)	5953.0	NM_001277903	21955.0	Mm.358643	NM_011618	ENSMUSG00000064179	Tnnt1	AW146156|Tnt|sTnT|ssTnT	troponin T1, skeletal, slow	protein-coding	5.14082697442062	5.58544694119261	4.96067072736959	5.15214403523829	5.17351514625685	5.31799099549442	5.79796864156725	4.87742849204382	0.184905978625225	0.602224608288466	0.827508067283734
Merged-chr1-127868802-4	chr1	127868707	127868907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178690)	promoter-TSS (NM_178690)	34.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	6.6562610888419	6.67175958660542	6.70205373731822	6.60218959235629	6.593797148741	6.77151323884219	6.63848995704176	6.47413295235524	-0.0478952268382981	0.813876987044008	0.928109035433692
Merged-chr15-6425522-1	chr15	6425422	6425622	+	747.0	f0_balb.idr	intron (NM_001008702, intron 9 of 13)	intron (NM_001008702, intron 9 of 13)	-19811.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	3.42290571742436	3.10214662372662	3.21128125722257	3.34577502148109	3.14869045823777	3.06477251597937	3.14117730454285	3.20961858794001	-0.523263217063894	0.345975276681909	0.654307575495964
Merged-chr15-41973477-3	chr15	41973373	41973573	+	816.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103753.0	NM_175456	223513.0	Mm.148913	NM_175456	ENSMUSG00000042895	Abra	C130068O12Rik|STARS	actin-binding Rho activating protein	protein-coding	3.74220424347593	3.7779765164456	3.84392577457454	3.8249774822474	3.62734038813133	3.75020605598228	3.82768443954824	3.8893160869226	-0.0826876470885071	0.854077225450201	0.945008271417317
Merged-chr9-32470626-4	chr9	32470520	32470720	+	802.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 2 of 8)	intron (NM_008026, intron 2 of 8)	70832.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	4.04750832395361	4.38114289765156	4.89601768767688	5.29555414882796	4.43276892100336	4.29117224628148	4.29781805041396	4.6167049242694	-0.739421003100694	0.116251802831653	0.377232779738281
Merged-chr18-67286231-3	chr18	67286132	67286332	+	728.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2991.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	3.99565648085562	3.45943231630417	3.640332492799	3.51655813937892	3.80357230609639	3.97800021614927	3.9333313070717	4.07944309037754	0.84346367621752	0.0731031123259139	0.290985708100113
Merged-chr17-33910158-4	chr17	33910062	33910262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045146)	promoter-TSS (NR_045146)	561.0	NM_001199733	13163.0	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	6.34817661050395	6.36888158747028	6.29306347288877	6.1301950086335	6.65567341966441	6.56139653156033	6.29842968435217	6.63753209880752	0.403642615429313	0.0694187599308089	0.281788304141149
Merged-chr7-127207586-3	chr7	127207478	127207678	+	803.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144522, exon 1 of 9)	exon (NM_144522, exon 1 of 9)	890.0	NM_144522	68449.0	Mm.41420	NM_144522	ENSMUSG00000042492	Tbc1d10b	1110003P22Rik|C87963	TBC1 domain family, member 10b	protein-coding	3.20978428484733	3.19753129517591	3.21019810907213	3.0551162681701	3.47707103883031	3.32193437734028	3.01377765921816	3.14916869783213	0.363312486152279	0.516343662435304	0.778087543875212
Merged-chr15-97871236-3	chr15	97871130	97871330	+	880.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009504, intron 4 of 9)	intron (NM_009504, intron 4 of 9)	-26728.0	NM_001204278	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	3.33573389718302	3.39557985693879	3.33617526188136	3.43792326135647	3.3610581899946	3.13709092642802	3.21093241409754	3.1597243650081	-0.570007431038628	0.289725879090657	0.601797547210046
Merged-chr15-74749392-2	chr15	74749292	74749492	+	846.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011838, exon 4 of 4)	3' UTR (NM_011838, exon 4 of 4)	-2705.0	NM_001081961	69462.0	Mm.64338	NM_001081961	ENSMUSG00000075605	Slurp2	2300005B03Rik|SLURP-2	secreted Ly6/Plaur domain containing 2	protein-coding	2.603548216915	2.65690009636469	2.44596791754134	2.49602893242463	2.64797965152155	2.98740211842132	3.22842136769244	3.09724550473394	2.12784757823791	0.00183355307223622	0.0218610509428311
Merged-chr10-37194312-5	chr10	37194259	37194459	+	954.507141	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55433.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	4.44652375522078	4.50909293139798	4.57020720463856	4.70843749545306	4.67754053578993	4.4391961278198	4.46921676850247	4.30859947995463	-0.184648980284594	0.618016355602323	0.835822295464892
Merged-chr5-107987118-7	chr5	107987017	107987217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026062)	promoter-TSS (NM_026062)	-40.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	5.9287554203466	5.53669936229163	5.68108215208678	5.56255554625273	6.32066580135141	6.19229886620675	6.4670138448077	5.75680327315517	0.852084028721934	0.00169796219677629	0.0205749520274187
Merged-chr17-30506976-4	chr17	30506901	30507101	+	964.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172618, intron 6 of 11)	intron (NM_172618, intron 6 of 11)	69286.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	5.02861821469782	4.4137239335908	4.85297413951135	5.12625084515103	5.2171285858919	5.06465002168214	4.90287503408029	5.0585269465954	0.339510481856837	0.33730220623311	0.647036656408706
Merged-chr3-109352870-2	chr3	109352770	109352970	+	774.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	12187.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	3.12346956672594	3.06529045708048	2.79015211477081	2.95053459447783	2.99849622607183	3.29460809873601	3.16895950465335	3.33860265274199	0.853789803469386	0.141715683913879	0.418839287836592
Merged-chr11-114891340-4	chr11	114891246	114891446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170758, intron 1 of 6)	Lx8|LINE|L1	1305.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	5.42219401612774	5.60481528760459	5.36003071489674	5.752140593328	5.69532598950872	5.63042716086371	5.80972375096701	5.96157696270932	0.357073881928827	0.193956223967676	0.494293235438425
Merged-chr3-96197615-4	chr3	96197518	96197718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026975)	promoter-TSS (NM_026975)	-32.0	NM_026975	69168.0	Mm.104531	NM_026975	ENSMUSG00000015943	Bola1	1810037G04Rik	bolA-like 1 (E. coli)	protein-coding	6.02855397921755	5.78279982453177	5.62145979907612	5.69054436478488	5.82228172934114	6.29865405542681	5.99881166246282	6.04570292292671	0.419858069537295	0.106886291567854	0.360537358900022
Merged-chr9-50905476-3	chr9	50905379	50905579	+	892.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 9 of 15)	intron (NM_178710, intron 9 of 15)	48555.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	3.86670805646396	3.89744958479398	4.06263478546392	3.92894982495072	3.79738207961308	3.93415567574269	4.04467956900602	4.22912258135095	0.179248817962498	0.679028161799592	0.868290915649849
Merged-chr4-139205159-4	chr4	139205059	139205259	+	936.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	ORR1D2|LTR|ERVL-MaLR	11048.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	4.04503551903203	3.68571629022168	4.19600154721986	4.14277146754261	4.60551654874947	4.4605204272515	4.17751910428205	4.69517436981729	1.11733739338915	0.00878728993599888	0.0719014266415064
Merged-chr3-158032323-6	chr3	158032217	158032417	+	933.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001093753)	promoter-TSS (NM_001093753)	-545.0	NM_001093753	69207.0	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	3.6441615217543	3.46304110627093	3.46630177839628	3.63807471761726	3.96686194554293	3.87159769480513	3.63038133865848	4.1037615519779	1.01763572265252	0.0318784364018668	0.174276130925382
Merged-chr19-5038333-4	chr19	5038220	5038420	+	885.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175383)	promoter-TSS (NM_175383)	-506.0	NM_175383	108902.0	Mm.29628	NM_175383	ENSMUSG00000047379	B4gat1	1500032M01Rik|B3gnt1|B3gnt6|BETA3GNT1|iGAT|iGNT	beta-1,4-glucuronyltransferase 1	protein-coding	4.84241715442552	4.80320056557165	4.21873741669756	4.37183360669936	4.49373161936977	4.24121087863478	4.20093724596769	4.40301621274451	-0.537199244425417	0.191482428407052	0.490888808629048
Merged-chr17-85575208-3	chr17	85575113	85575313	+	880.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43183.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	4.21202546545809	3.80331450937628	3.6580090547416	4.3408125859764	3.67927215663152	3.71715872647326	3.58591800503142	3.59711848782551	-1.16901378975123	0.0195817617201697	0.126125257214728
Merged-chr1-172313206-5	chr1	172313168	172313368	+	998.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080419, intron 1 of 6)	intron (NM_080419, intron 1 of 6)	901.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	4.71444502571968	4.99963585798408	4.51522865308224	4.44554972058419	4.46390057901484	4.69030899532708	4.57773205715306	4.67456458315834	-0.174047651527531	0.639452881187666	0.847607151813091
Merged-chr14-55194029-4	chr14	55193941	55194141	+	839.020874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27966.0	NM_027790	71412.0	Mm.85484	NM_027790	ENSMUSG00000022209	Dhrs2	5430405K24Rik|Hep27	dehydrogenase/reductase member 2	protein-coding	4.24564061832799	3.84139874207049	4.46301786454316	4.35246200497166	4.43309606036813	4.2760492148683	4.13077353442186	4.92086416728331	0.532536709087937	0.231690866778817	0.541246385108847
Merged-chr12-28654433-4	chr12	28654316	28654516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286865, intron 3 of 7)	intron (NM_001286865, intron 3 of 7)	4814.0	NM_001286865	19819.0	Mm.10152	NM_011275	ENSMUSG00000020630	Rnaseh1	-	ribonuclease H1	protein-coding	5.64827437167229	5.47790521033614	5.2939636896604	5.53174364548177	5.92585274871549	5.824031839975	5.56826330755484	5.98285473918918	0.567903292902443	0.0343698156464784	0.183265346310637
Merged-chr16-33917642-4	chr16	33917537	33917737	+	989.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	49401.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	5.76493353299887	5.2327869266389	6.25612512902202	6.4794630742115	5.55039832826892	5.19920796125691	5.94194220715285	6.10860580695278	-0.446496533252348	0.233444926482266	0.543123010560797
Merged-chr1-39464014-4	chr1	39463950	39464150	+	930.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357521, intron 1 of 19)	intron (NM_001357521, intron 1 of 19)	14697.0	NM_018775	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	4.96742964662382	4.90083832382249	5.03805750436854	5.71678049701456	4.58043186290353	4.78078204343867	5.14141026457544	5.19381598110795	-0.528416843138348	0.173954824549579	0.468213348974044
Merged-chr11-3266403-4	chr11	3266281	3266481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007879)	promoter-TSS (NM_007879)	82.0	NM_007879	13494.0	Mm.3250	NM_007879	ENSMUSG00000020457	Drg1	AA408859|AI132520|DRG-1|NEDD-3|Nedd3	developmentally regulated GTP binding protein 1	protein-coding	8.15352842458682	8.09781681500547	8.25348972265783	8.03235305394438	8.09841928471256	7.93000893215818	8.07953219378123	7.81987426783357	-0.180999295501533	0.271618210311687	0.583248237956304
Merged-chr19-5713720-4	chr19	5713624	5713824	+	972.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114595, intron 11 of 17)	intron (NM_001114595, intron 11 of 17)	9253.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	5.13654618153392	5.62475593444773	4.77545748410898	4.63053669495854	5.06783736101011	5.34153583481503	4.7938546835984	4.96571405224073	-0.0797626338780909	0.837547576889278	0.938358606299218
Merged-chr14-78549004-3	chr14	78548908	78549108	+	966.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12148.0	NM_001164503	219181.0	Mm.89413	NM_001164503	ENSMUSG00000022016	Akap11	6330501D17Rik|AKAP220|Gm80|PRKA11|mKIAA0629	A kinase (PRKA) anchor protein 11	protein-coding	3.93177316821671	3.59857062688179	4.01766533500482	4.01956437736441	3.34066664247829	3.63631838840166	3.44506652441866	3.68778658085145	-1.18769323212073	0.0182764193697143	0.120565083810648
Merged-chr10-80292391-4	chr10	80292315	80292515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310726)	promoter-TSS (NM_001310726)	-16.0	NM_009091	20054.0	Mm.643	NM_009091	ENSMUSG00000063457	Rps15	rig	ribosomal protein S15	protein-coding	7.45686648816955	7.56312530689046	6.87886687200891	7.16018353978207	7.29777098683666	7.49805237362869	7.37408872476223	7.4436737444325	0.150861872762829	0.474222392679684	0.751607118426792
Merged-chr11-96896055-3	chr11	96895955	96896155	+	923.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20459.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	3.65452530352867	3.39840514292659	3.36009600281991	3.36213786985142	4.55728976079575	4.72908211566965	4.53347454771909	4.68417152924762	3.20121123730299	6.59814372206563e-12	6.13535519946516e-10
Merged-chr14-27230904-4	chr14	27230803	27231003	+	847.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 3 of 12)	intron (NM_001289686, intron 3 of 12)	-7107.0	NM_027871	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	4.26823518766028	4.08889041821722	3.81672204898709	3.95378978608695	4.11334195007865	4.39658721605641	4.40682206927397	4.17852496209393	0.604003997565311	0.14528440339974	0.424709585455561
Merged-chr7-118995271-4	chr7	118995203	118995403	+	905.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195774)	promoter-TSS (NM_001195774)	-92.0	NM_001195774	64297.0	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding	4.46757367594649	4.23886271712007	4.08115279133819	4.29856772623111	4.22173092828358	3.86040760778981	4.33193360515236	4.2652423197381	-0.231765125788811	0.575420413347321	0.813026770185778
Merged-chr2-20894360-4	chr2	20894259	20894459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128084, intron 3 of 24)	MTD|LTR|ERVL-MaLR	73362.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	5.74544095757041	6.46719388309087	5.66535348160479	6.06800720248017	6.28324492874352	5.92396113770392	5.74310947168547	5.76828723203223	-0.117948631854161	0.695638507723118	0.876805160171895
Merged-chr3-87324046-2	chr3	87323947	87324147	+	786.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-33834.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	2.90015894884695	2.96993739130264	3.14182419058893	2.57268668072652	2.90591165377112	3.31097352408715	2.95421249377884	2.96357043462365	0.568940173635741	0.375897153207496	0.678775774218793
Merged-chr19-11053252-4	chr19	11053181	11053381	+	912.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2715.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	4.19828620909758	4.58102287123832	4.19890520502381	4.47757706807904	4.13858828377132	4.37359623768994	4.5867007271791	4.09612695075255	-0.178214091638897	0.663662784048757	0.860703683820224
Merged-chr2-4617007-4	chr2	4616923	4617123	+	957.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35112.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	4.312891780792	4.67159458215016	5.07971614496207	4.55701757247641	4.73867055288037	5.2195906969312	4.48686736365499	4.54862119406818	0.205895856342203	0.611065711337213	0.83217032290492
Merged-chr4-59189757-2	chr4	59189657	59189857	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011673, intron 1 of 8)	CpG	207.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	3.70027332226397	3.86763755553007	4.07902973889678	3.77791557896666	3.75196723290123	3.7624061547811	3.63094378958918	3.85383550778157	-0.313011174156418	0.494682988673295	0.765224506688757
Merged-chr9-78615720-3	chr9	78615646	78615846	+	912.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153098, exon 1 of 33)	5' UTR (NM_153098, exon 1 of 33)	200.0	NM_153098	235505.0	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	3.11995255110772	3.29994088276102	3.12033243811803	3.18572067810418	3.01797014741816	3.29081215665106	3.22379566284787	3.05674630094156	-0.148613477300396	0.789468420601086	0.918495794540122
Merged-chr1-172456137-4	chr1	172456048	172456248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19212.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	6.87578130996411	7.12971669838484	7.28378370532053	7.1652287363599	7.09685538753007	7.13621190337587	7.29730555273418	6.99318270583911	0.0131529247145255	0.94632107738813	0.980868358011675
Merged-chr16-22061859-4	chr16	22061741	22061941	+	870.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 15 of 15)	intron (NM_183029, intron 15 of 15)	52357.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	4.26612855366749	4.30473980581772	4.22274687645265	4.28605013386354	4.2429785536295	4.15309895419275	4.0135332710964	4.26412637165781	-0.240907282629506	0.53975594748761	0.792406302070178
Merged-chr7-145111598-4	chr7	145111504	145111704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96515.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	7.952459909434	8.3787402521487	8.48753392766643	8.28947274549579	8.18535257692049	8.16034341855165	8.32829946183683	8.25216482624612	-0.076829867444519	0.658848936575557	0.858040590184092
Merged-chr17-83646570-4	chr17	83646494	83646694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14699.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	5.42105155516901	5.29626862017209	5.44990029150661	5.52898177272498	5.16623739927274	5.20780299725387	5.47623017582693	5.55181965263489	-0.13925176099889	0.630310891403799	0.842770713613807
Merged-chr11-83964371-4	chr11	83964267	83964467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194341)	promoter-TSS (NM_194341)	-64.0	NM_194341	217030.0	Mm.82680	NM_194341	ENSMUSG00000034940	Synrg	Ap1gbp1|SYNG	synergin, gamma	protein-coding	6.00752854888155	5.63111786126528	5.33795365073877	5.68924360240098	5.87132270863077	5.54557110314003	5.65179793786279	5.62504304144712	0.00120214178949916	0.996618745734728	0.998649443287934
Merged-chr8-104170607-4	chr8	104170405	104170605	+	809.354187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141922)	promoter-TSS (NM_001141922)	-8.0	NM_001141924	65115.0	Mm.41849	NM_001141922	ENSMUSG00000031872	Bean1	Bean	brain expressed, associated with Nedd4, 1	protein-coding	3.51116006655834	3.23439249927212	3.51166620065869	3.49683461638929	3.27495921701549	3.51957836773026	3.33627591561635	3.22595163209129	-0.368160567363153	0.4833960635375	0.757806109710285
Merged-chr7-97251824-4	chr7	97251740	97251940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 2 of 9)	intron (NM_001162477, intron 2 of 9)	74124.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	7.14230922725554	7.11215065934586	6.90014970690322	7.13967578117596	6.75943764034719	6.74192272483533	7.08541724367642	6.84038484761982	-0.30600126472285	0.124835989671503	0.39218277534506
Merged-chr11-4187169-2	chr11	4187069	4187269	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	CpG	336.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	5.23324178403553	4.99082152230142	4.72553274601885	4.56672540752541	4.97430201821169	5.02011338201865	4.85883380062763	5.17344637565236	0.241750250569233	0.489043744111465	0.761571656414145
Merged-chr4-130663250-4	chr4	130663177	130663377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159604)	promoter-TSS (NM_001159604)	-44.0	NM_030722	80912.0	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	6.64696237155008	6.47284541953417	5.97603563344982	5.96229324836616	6.20297576194813	6.37237337459039	6.5714188252353	6.21123664265883	0.0837487031305719	0.755135569278659	0.903608318762915
Merged-chr12-56429587-3	chr12	56429477	56429677	+	794.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83683.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	3.71600468780019	3.48277594122233	3.446738270393	3.91140756681297	3.5118046345159	3.49884396807963	3.54781749869031	3.71434849835434	-0.31051383378685	0.54047159653071	0.792791916938885
Merged-chr11-100699756-2	chr11	100699656	100699856	+	947.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030150, intron 7 of 12)	PB1D10|SINE|Alu	4515.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	3.80427754056291	3.51250818859976	3.29683289699304	3.18472836109363	3.61360490167294	3.48158455543616	3.58772156539584	4.19923387393576	0.887444209241702	0.107422216126165	0.361488555297103
Merged-chr1-186705363-4	chr1	186705268	186705468	+	934.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001329107, exon 1 of 8)	5' UTR (NM_001329107, exon 1 of 8)	621.0	NM_009367	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	5.45817261445554	5.10339353897854	5.29261530733312	5.49701768093547	4.94422788838335	4.97222736400127	5.26631092972112	5.34687068634541	-0.398054971425482	0.202165569254482	0.50461441050349
Merged-chr14-65374225-3	chr14	65374109	65374309	+	726.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199029, intron 1 of 9)	intron (NM_199029, intron 1 of 9)	15533.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	3.74281269255262	3.71278610905439	3.42805880095893	3.63798328773932	3.60638501094542	3.4147609629456	3.47343515159663	3.59360163722822	-0.351442467188917	0.47503883663279	0.752066636719659
Merged-chr17-33931717-4	chr17	33931601	33931801	+	836.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009059, intron 2 of 17)	intron (NM_009059, intron 2 of 17)	1807.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	3.69655527554077	3.64355891100066	3.64556190220533	3.6514596333277	3.65239081546527	3.46556949577004	3.57810059532881	3.83698048757721	-0.0507123975088046	0.91473985546966	0.968225618577408
Merged-chr1-92180440-4	chr1	92180274	92180474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207225)	promoter-TSS (NM_207225)	-33.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	9.24765710902884	9.41101341037851	9.48872207318791	9.3911222662694	9.32183462669454	9.3221047867374	9.39190429094205	9.34822529808317	-0.0514728348016229	0.704272474214886	0.881194811597198
Merged-chr14-70060175-2	chr14	70060075	70060275	+	651.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028560)	TTS (NM_028560)	-17270.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	3.24377268439993	3.13816721950811	3.24417071579327	3.30434188635971	3.26527790755777	3.47513401087814	3.34773367688821	3.61077356531006	0.66589760287449	0.206080055439304	0.509962879506126
Merged-chr8-46844786-4	chr8	46844708	46844908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 6 of 7)	intron (NR_152560, intron 6 of 7)	105063.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	5.37877005064974	5.38548093442277	5.34912937064148	5.33761048265083	5.49675766180613	5.58456423520433	5.62192607864512	5.74044017063542	0.430354238440846	0.107289715107442	0.361382260156614
Merged-chr7-49753269-3	chr7	49753191	49753391	+	913.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5815.0	NM_001146053	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	3.51575767588666	3.52849693900914	3.57031132768978	3.46519049342112	3.47009267445857	3.45236323790209	3.70380690598033	3.62010956058019	0.154856355986269	0.748927047081801	0.901111877221528
Merged-chr1-171270918-3	chr1	171270836	171271036	+	850.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020579, intron 1 of 7)	intron (NM_020579, intron 1 of 7)	608.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	2.9520335688104	2.74477908440206	2.83691565560935	2.87087016529461	2.94383571890668	2.744721611443	2.63441199244448	2.70876868542469	-0.383618962973238	0.549617483191079	0.798066561323089
Merged-chr10-59735636-4	chr10	59735533	59735733	+	950.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359267, intron 3 of 11)	intron (NM_001359267, intron 3 of 11)	33070.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	4.59612809790726	4.90705637963562	4.67977067190911	4.90236831276288	5.01830503394139	4.68564316815668	4.80804804552478	4.63601743111909	0.0345217862862068	0.920827505833564	0.970640619747695
Merged-chr10-117313330-4	chr10	117313223	117313423	+	979.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20455.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	4.23471545807565	4.82182901064428	4.61282201567908	4.26157574663039	4.73088332944404	3.96725583006201	4.55409225821438	3.9645999934263	-0.329390690246918	0.482932904614315	0.757463266863053
Merged-chr12-30265350-3	chr12	30265243	30265443	+	768.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324520, intron 8 of 16)	ORR1E|LTR|ERVL-MaLR	108032.0	NM_172951	268534.0	Mm.279765	NM_172951	ENSMUSG00000020672	Sntg2	2210008K22Rik|9530013L23|BB121248|G2syn|Syn5	syntrophin, gamma 2	protein-coding	3.44443379066614	2.96963054611053	3.23451265102839	3.28363109255339	2.64819350666402	2.80233132281207	2.62228910183885	2.69963918555359	-3.09464544847225	8.3792284436631e-05	0.0017505873243073
Merged-chr3-87215351-4	chr3	87215226	87215426	+	831.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-40579.0	NM_130867	170643.0	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kirre like nephrin family adhesion molecule 1	protein-coding	4.01046436198319	3.44056871206283	3.67344554437041	3.9742574509331	3.94753621576009	3.61282908158055	3.48469970082789	3.96554659169123	-0.0753463132401054	0.883921698008923	0.956367776063247
Merged-chr10-120234156-3	chr10	120234041	120234241	+	772.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7081.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	2.75420708495012	2.75266588887348	2.75446104211983	2.6355293306549	3.76866034455478	3.08843847628853	3.31318847660448	3.42580979844577	2.9929027106488	2.31644649104862e-06	7.4556563102899e-05
Merged-chr13-49272437-4	chr13	49272338	49272538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 14 of 17)	intron (NM_015759, intron 14 of 17)	-23732.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	6.69758095112791	6.36713454544148	6.90769961677536	7.09646023547699	6.24126213613494	5.87325176243373	6.48191336136369	6.27645726145685	-0.82683130873865	0.00158515873456639	0.0195342821273721
Merged-chr8-26980819-3	chr8	26980710	26980910	+	877.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001101502, exon 2 of 2)	3' UTR (NM_001101502, exon 2 of 2)	3474.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	4.44582977266331	4.21473874401581	3.98432057940043	4.25937835538417	4.11254675881042	4.0009891569571	3.56092732793793	3.98200458990773	-0.790704745396226	0.0850936425493389	0.317503484974581
Merged-chr1-180777825-4	chr1	180777701	180777901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	35804.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	6.46800771570982	6.26478275982614	6.08420396734319	6.27388984350091	6.00261505211607	6.36256515841591	6.15563936355227	6.16286050109057	-0.17002525536452	0.468769519845697	0.747931420316418
Merged-chr2-156146786-2	chr2	156146686	156146886	+	956.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164216)	TTS (NM_001164216)	2553.0	NM_025946	67067.0	Mm.371623	NM_025946	ENSMUSG00000067847	Romo1	2010100O12Rik|AI853864	reactive oxygen species modulator 1	protein-coding	3.08070952429202	2.91572103626643	2.96934512344473	2.95423011001866	2.67000927462637	2.88740910459506	2.77251654597502	2.90808135505976	-0.790239440977247	0.202483154622178	0.50494183017091
Merged-chr2-71644253-4	chr2	71644144	71644344	+	861.6124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	(CA)n|Simple_repeat|Simple_repeat	-75173.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	4.72784368322507	4.61840117732573	4.72862105915552	4.57384938890447	4.43006268993293	4.90004515902175	4.81149376331714	4.48203376047528	0.0113507433177383	0.974808543478575	0.990966385645806
Merged-chr3-52199164-3	chr3	52199070	52199270	+	745.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69167.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	3.20771620272291	3.10679262565505	3.39033578295953	3.17214809940109	3.35334194767624	3.71883156354204	3.2597878753557	3.73383509821642	1.07349570274762	0.0460411755501666	0.220279302468384
Merged-chr12-76710618-2	chr12	76710518	76710718	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013675)	promoter-TSS (NM_013675)	-71.0	NM_013675	20741.0	Mm.32881	NM_013675	ENSMUSG00000021061	Sptb	AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219	spectrin beta, erythrocytic	protein-coding	3.43881823063191	2.96135221042019	3.23386897390725	3.25000715103129	3.01420301421696	3.16455150585876	3.10611108798155	3.11560790819389	-0.519987689995263	0.364745617020999	0.669509213315223
Merged-chr1-88495441-3	chr1	88495358	88495558	+	897.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	14608.0	NM_008132	14659.0	Mm.5187	NM_008132	ENSMUSG00000062310	Glrp1	GRP-1	glutamine repeat protein 1	protein-coding	3.38638770587689	3.4863324625296	3.32061219508459	3.89814692222095	3.23601619757133	3.50383181638187	4.09145373628448	3.99382948939123	0.605200236318854	0.309511901607248	0.621756150990825
Merged-chr3-122638831-4	chr3	122638733	122638933	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19119.0	NM_001114665	214459.0	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	5.01071029643566	5.07067718245156	4.90331698688337	5.34747680621909	4.82890205476503	5.21876114641821	5.08626386701062	4.97314162868434	-0.168875544064356	0.606421541417897	0.829368409964156
Merged-chr10-58405540-3	chr10	58405432	58405632	+	889.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359116, intron 2 of 9)	intron (NM_001359116, intron 2 of 9)	11159.0	NM_001346676	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	3.88581537610815	3.84338430287037	3.63742647473548	3.76751012145871	3.66695746434764	3.37144962086741	3.72750936819466	3.79034430226177	-0.411842245135645	0.391182168265724	0.691035696926048
Merged-chr5-88596230-4	chr5	88596128	88596328	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 2 of 13)	MTD|LTR|ERVL-MaLR	12715.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	4.79911709558237	5.04666100995544	5.20815042278894	4.8863976194787	4.89989476598396	5.12487862656639	4.96204071459076	5.11419352583495	0.0699227026073096	0.826585612547948	0.933488045260841
Merged-chr12-79633635-4	chr12	79633516	79633716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	291117.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	6.87143120817574	7.14958844989239	6.8186898622289	6.88425789538143	6.63449003037	6.5368594884652	6.63869540376835	6.74301678407455	-0.420747795921984	0.0392082830673772	0.19920102644203
Merged-chr19-45014808-4	chr19	45014700	45014900	+	867.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145503)	promoter-TSS (NM_145503)	-376.0	NM_145503	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	4.42949881763449	4.46727441075366	4.34787725732024	3.75189142843576	4.36277057512419	4.51982651763745	4.24083988243167	4.11311724248152	0.119754815981546	0.787472558248404	0.917568537062929
Merged-chr2-169700322-4	chr2	169700203	169700403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	66657.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	6.0545056851302	5.82368338551289	5.62229649841889	5.86798030550414	6.12395453973906	5.71387642387288	5.5651855465151	6.61487197489492	0.352475708529927	0.26027044455848	0.572042049219392
Merged-chr11-99068658-4	chr11	99068582	99068782	+	938.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172564, intron 12 of 12)	B4A|SINE|B4	20624.0	NM_172564	217169.0	Mm.262067	NM_172564	ENSMUSG00000017607	Tns4	9930017A07Rik|AA589547|AU016405|Cten	tensin 4	protein-coding	4.58127457764853	4.04706562830951	4.62220318535467	4.65857613422442	4.84308012070418	4.44122879983966	4.51963150510169	5.13097827924113	0.559748759490665	0.171760173933168	0.465089336091783
Merged-chr17-5784146-4	chr17	5784031	5784231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14526.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	5.56702683396654	5.25913567492743	5.46205519154377	5.76146730341417	5.14266110151436	5.52124975016899	5.19368511653986	5.40176994810625	-0.396148914510019	0.187415335808839	0.48581943275529
Merged-chr4-59822259-4	chr4	59822102	59822302	+	938.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	RMER6A|LTR|ERVK	16552.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	5.23935110693878	4.61924519919057	5.15734117662707	4.97969148005919	5.02497752155264	4.85242231001141	4.37882878942829	4.54080068763004	-0.566371484435188	0.13906793318788	0.414640657495084
Merged-chr1-155442650-2	chr1	155442550	155442750	+	990.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25206.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	3.42707240390388	3.45375683828978	3.42752117642259	4.16897788102596	3.08185207696763	3.13131529899862	3.81105926356403	3.48319391348665	-0.82040407093666	0.196868652357845	0.498095254902749
Merged-chr2-73554601-4	chr2	73554498	73554698	+	877.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-25111.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	4.0720103690918	4.24369757020232	4.07257963405687	4.54045715304128	4.53493173367649	4.19679961657249	4.29013642733489	4.3491279402527	0.208629075695408	0.617174724971047	0.835375923972642
Merged-chr5-24908947-4	chr5	24908838	24909038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170556)	promoter-TSS (NM_001170556)	-429.0	NM_001170555	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	5.40202022152477	5.57802862869675	6.10426292409211	5.67223143903786	5.22432497980861	5.42093570410682	5.3760305828596	5.54209928554599	-0.555189191179299	0.0628952461023147	0.265891828848171
Merged-chr3-103735085-4	chr3	103734884	103735084	+	855.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133859)	TTS (NM_133859)	3017.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	3.56530807922275	3.22650661260493	3.45368609345937	3.42405896172344	3.40183257957556	3.73700819773744	3.74742983155301	3.71531816246591	0.747898054965894	0.136429013864871	0.41092081829247
Merged-chr18-12938389-4	chr18	12938287	12938487	+	894.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 1 of 27)	intron (NM_207530, intron 1 of 27)	3454.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	4.4054275709006	4.46073443101619	4.40611654041033	4.68383049425697	4.37332067281246	4.19930425250641	4.25582167328138	4.22465570819497	-0.562919824776829	0.143341973873976	0.42157418223187
Merged-chr8-120599736-4	chr8	120599637	120599837	+	856.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-10662.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	4.32913913192562	4.43025600559519	3.72870775818339	4.0054260943751	4.64343295051783	4.58651745066235	4.31016674153791	4.52967225606628	0.893665452242935	0.0347923810438266	0.184674637607646
Merged-chr1-191576042-4	chr1	191575932	191576132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029766)	promoter-TSS (NM_029766)	396.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	7.26515272469682	7.48124713149646	7.04972515974334	7.25145703850509	7.62184693223746	7.52926324947487	7.80326799749372	7.60686188433119	0.494282032432623	0.00772853056255936	0.065551605923786
Merged-chr18-68058530-4	chr18	68058436	68058636	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	125363.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	5.83392091262329	6.43553950330024	5.81264146466802	4.9450856928686	5.78117304366001	5.5990204562524	5.23076517780956	5.02715192404701	-0.688246363355788	0.0848596019280904	0.317004230056502
Merged-chr13-52962581-3	chr13	52962491	52962691	+	882.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	18448.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	3.5461054691586	3.51374897253779	3.7961949955641	3.68997656450278	3.58390955357528	3.20171604101332	3.73373883942701	3.59856112435639	-0.304493548567737	0.554125728598213	0.800543515697176
Merged-chr2-104110285-4	chr2	104110184	104110384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007652, intron 2 of 3)	intron (NM_007652, intron 2 of 3)	-12485.0	NM_026634	68243.0	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	6.16097919393809	6.08712935112644	5.57057775286528	6.06279682601132	4.7154327564948	4.4683124249938	5.11637760803376	5.10173601233958	-2.00747208972124	2.60295289093198e-09	1.55172180756823e-07
Merged-chr5-135476420-4	chr5	135476339	135476539	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	68683.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	5.81188330344361	5.74455398800851	5.29011956003508	5.55500480397744	6.09250254313424	6.10099873760074	6.02011623185529	5.87830744033701	0.671684645391885	0.0098210272804157	0.0778626532404443
Merged-chr6-50114443-4	chr6	50114346	50114546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361248, intron 1 of 13)	intron (NM_001361248, intron 1 of 13)	3586.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	7.23460747171822	7.04737404858784	7.02552186122362	7.52269529032155	6.66908814208049	6.49677734760002	6.76706126385663	6.55995717299804	-0.847279906832309	0.000101896358228969	0.00206223511014494
Merged-chr8-128610914-4	chr8	128610819	128611019	+	905.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74735.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	4.44746551091982	4.0678974603742	4.09763864169905	4.32421946016476	4.03996086402916	4.17092135519786	4.42720511689651	4.40643761915739	0.0442495864674796	0.914133987987405	0.967873172075434
Merged-chr9-99492908-3	chr9	99492828	99493028	+	574.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 18 of 21)	intron (NM_028768, intron 18 of 21)	22507.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	3.2767609764128	3.10126195987625	3.06415200366173	3.08425221328088	2.94553515249426	2.84118977288294	2.86844020833276	2.9411451544263	-0.991659654516892	0.0984685323405524	0.343994301133918
Merged-chr17-13685837-4	chr17	13685741	13685941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74700.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	7.14324097852665	6.69680751130764	6.90808009145324	7.15574122994536	7.14408756339979	7.16465679846189	7.26747903246958	7.20567576079095	0.270917949818503	0.17847874275516	0.474282728191057
Merged-chr1-170292597-2	chr1	170292497	170292697	+	875.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13735.0	NM_001198955	665574.0	Mm.65316	NM_001198955	ENSMUSG00000102752	Gm7694	EG665574	predicted gene 7694	protein-coding	3.19541583578923	3.22922770863091	2.86885258277183	3.23345163210899	3.16576616233779	3.24685669561902	3.23979603009228	3.30481679058448	0.344623245984152	0.541293092758847	0.793195970055626
Merged-chr15-98928742-4	chr15	98928654	98928854	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GCTTG)n|Simple_repeat|Simple_repeat	5636.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	5.08956348768236	4.9654598108327	4.42250680483593	4.73493631536845	5.18619613112892	4.74766218947392	4.90343501304483	5.08690661162596	0.352026658545713	0.320729245512564	0.63245145906536
Merged-chr3-40526267-3	chr3	40526131	40526331	+	804.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3319.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	3.08021997529564	2.98014986514413	2.8831770999065	3.00859704129617	3.33892600887937	3.19098116054753	3.06967079867096	3.35273022764254	0.998028196057236	0.0756343560156919	0.297110482614546
Merged-chr16-25805128-4	chr16	25805034	25805234	+	964.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127262, intron 1 of 10)	intron (NM_001127262, intron 1 of 10)	3218.0	NM_001127264	22061.0	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	4.12450520999041	4.24480276046127	4.74849581794573	4.626226313995	4.91422080025733	4.31026676589607	5.16295512539588	4.38019435989327	0.601037660973173	0.1709468045539	0.464071117837823
Merged-chr16-21666683-3	chr16	21666587	21666787	+	948.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	intron (NM_001001881, intron 1 of 1)	27978.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	3.56174576327954	3.60477760513958	3.89126802646094	4.04184058906839	3.18646142571513	3.30666105837829	3.37828453082226	3.26079177271938	-1.81982869874758	0.000936062053712882	0.0127517628557377
Merged-chr11-120518281-4	chr11	120518194	120518394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12433.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	7.38965427504706	7.59021070739138	7.07640394594722	6.91798133401511	7.41549997490217	7.47840797886123	7.26501044902286	6.65150881154578	-0.0305103216679954	0.904302947762665	0.964559678221358
Merged-chr13-21453645-4	chr13	21453556	21453756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013786)	promoter-TSS (NM_001013786)	71.0	NM_001013786	432731.0	Mm.390557	NM_001013786	ENSMUSG00000022228	Zscan26	BC068174|Zfp187|Znf187	zinc finger and SCAN domain containing 26	protein-coding	5.98495505734852	6.25971731574625	7.20143620838409	6.39490375601084	5.93402462048904	6.34342940665838	6.13362713730954	6.42421609677006	-0.481400617581095	0.125373403218679	0.392969900378808
Merged-chr3-95882434-4	chr3	95882334	95882534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033302)	promoter-TSS (NM_001033302)	-206.0	NM_001033302	229599.0	Mm.331218	NM_001033302	ENSMUSG00000038550	Ciart	Chrono|Gm129	circadian associated repressor of transcription	protein-coding	7.64588616722688	7.76838730927627	7.72234258131229	7.83747801019164	7.67825354977569	7.93142911160848	7.6184391975009	7.88380000970205	0.038656788900043	0.822573979394988	0.932143478460956
Merged-chr11-40692667-4	chr11	40692577	40692777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134017)	promoter-TSS (NM_134017)	5.0	NM_134017	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	8.56253701653437	8.43348572472137	8.33495277746816	8.80799519729576	8.37100181127864	8.2800315617245	8.63536552049529	8.41056484491138	-0.156039682453261	0.379399514738956	0.681975341057594
Merged-chr17-26451775-3	chr17	26451689	26451889	+	776.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36824.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	3.06093246795228	3.50849461085131	3.20360531251684	3.22345601523334	3.67651852438127	3.7775255328324	3.54338005005094	3.60697983594389	1.31345610672916	0.0120584810357935	0.0902439934440905
Merged-chr10-26799043-4	chr10	26798953	26799153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	26541.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	6.9872337042364	7.33203951749057	7.50753073478954	7.45645493438054	6.91887002053817	6.81332842102865	6.95310934056054	6.74339942616711	-0.658595744909597	0.00131675727450551	0.0168168248928265
Merged-chr13-111968762-4	chr13	111968666	111968866	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100830.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	5.67518247495845	5.00867673466806	5.21537935765985	5.79572337332955	5.31349730675327	5.143679296423	5.28356005054414	5.24406061017857	-0.408008850871236	0.216726928196443	0.523425828654133
Merged-chr19-10839690-4	chr19	10839603	10839803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2841.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	5.74061450264166	5.83834328696436	5.76672371383837	5.19483016324691	5.69516639316442	5.9672886224303	6.27187371581211	6.06966172414297	0.600653425386421	0.0422317960524299	0.208447195840504
Merged-chr19-37207562-4	chr19	37207440	37207640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290828)	promoter-TSS (NM_001290828)	-5.0	NM_027314	69104.0	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	6.50304011697936	6.82204152253257	6.72719271638117	6.56080961503168	6.75159582467092	6.85893015323912	6.90619688852668	6.61589315137887	0.186351784994122	0.371027792723356	0.675115631868064
Merged-chr18-3888796-3	chr18	3888696	3888896	+	697.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_A|LINE|L1	-277036.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	3.77918458380372	4.25635211419896	4.04987213585985	2.99184878440796	4.1091387298829	4.44656553213871	4.33244896692267	4.18628368991178	1.03917654793354	0.0694933325400271	0.281962373417693
Merged-chr5-105110544-7	chr5	105110477	105110677	+	998.8095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153378)	promoter-TSS (NR_153378)	-285.0	NM_172777	236573.0	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	5.23164898396175	5.53414430350107	5.06817292041088	4.40139649775058	5.49148022433702	5.68036847662389	4.93455542260962	5.02918930181214	0.371627433297476	0.354829990485551	0.661492467268302
Merged-chr5-3348145-4	chr5	3348041	3348241	+	802.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	4248.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	3.56558388056641	3.96005251183261	3.87184264620966	2.97580573084394	3.85976130423626	3.94966652994339	3.55170362480833	3.16873596455651	0.0252383496351915	0.968184164978671	0.988694268692349
Merged-chr8-12757463-4	chr8	12757406	12757606	+	720.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015804, intron 1 of 28)	CpG	490.0	NM_001293667	50770.0	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	3.19365841982054	3.31562152962713	3.19400733198944	3.44476832342886	3.39934726416671	3.55599684378557	3.4806025582147	3.90182173964828	0.974391128459991	0.070683075895324	0.285051028847211
Merged-chr10-83645201-4	chr10	83645093	83645293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145220, intron 1 of 20)	intron (NM_145220, intron 1 of 20)	3471.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	7.12024660450799	6.49657453868213	7.17626992327404	7.48507178172423	6.26384364827776	6.84592239946739	6.94390331223254	7.07086643402307	-0.435812763508097	0.119905450463491	0.38332585037237
Merged-chr1-36086775-3	chr1	36086691	36086891	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	ORR1B1|LTR|ERVL-MaLR	18391.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	3.57081435241267	3.92433801765175	3.87096659266225	3.14486062020112	3.68870877868385	3.57101512747671	3.61153299157647	3.56933171242794	-0.143343213049483	0.792745208212987	0.919687041333123
Merged-chr13-81109925-4	chr13	81109841	81110041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	145867.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	5.24033277581878	5.13863205930294	5.41492003110245	5.5120429581756	5.16023124015003	5.18026747531133	5.18426865690425	5.20622976149487	-0.304192809174361	0.304290930237874	0.616977638512856
Merged-chr10-61423029-4	chr10	61422946	61423146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013611, exon 2 of 3)	exon (NM_013611, exon 2 of 3)	5074.0	NM_013611	18119.0	Mm.57195	NM_013611	ENSMUSG00000037171	Nodal	Tg.413d	nodal	protein-coding	6.25418690757357	6.24241843555241	6.31006390824694	6.33309310774759	6.33154392131364	5.91114634390698	6.02245916590685	6.17392207539322	-0.237392250509831	0.310303934681037	0.62247058497482
Merged-chr1-150395812-3	chr1	150395731	150395931	+	850.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133780, intron 3 of 51)	RMER6B|LTR|ERVK	-2751.0	NM_001357579	226499.0	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	3.82658538911875	3.58532791454346	3.58517586675579	3.3470810934183	3.62383938767496	3.64735364175442	3.40231896680022	3.47207880683192	-0.138848928720653	0.78477585209622	0.916241189783762
Merged-chr19-45017510-4	chr19	45017419	45017619	+	931.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130526)	promoter-TSS (NM_001130526)	-616.0	NM_001130526	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	4.63054111511799	4.8373929902507	5.2341941989611	4.55401745306752	4.46864204867662	4.54201858383788	4.64939754438446	4.62827450600135	-0.553228978698853	0.142672363355878	0.420403881077499
Merged-chr1-36308781-1	chr1	36308681	36308881	+	550.0	f0_balb.idr	intron (NM_001290727, intron 1 of 5)	intron (NM_001290727, intron 1 of 5)	1048.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	3.22840845758647	3.17401232404902	3.5082089794612	3.24312847841823	2.91136264818273	3.4050859124338	3.27711332310671	3.73453330851836	0.25037997083035	0.674501938830442	0.866144208984521
Merged-chr12-100188260-3	chr12	100188156	100188356	+	883.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045282, exon 1 of 3)	non-coding (NR_045282, exon 1 of 3)	288.0	NR_045282	100038378.0	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	-	predicted gene 10433	ncRNA	3.92333881873858	3.79252965653816	3.96645526470772	3.22296317544769	3.58520020498084	3.37773193820615	3.38561311721599	3.78484717223116	-0.644943140990547	0.248214430099131	0.559293454564815
Merged-chr9-44652185-4	chr9	44652081	44652281	+	948.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21052.0	NM_001277851	58866.0	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	5.5033191383411	5.35715076043678	4.82573183427962	5.13595965275786	5.28026384229278	4.87609975807478	5.57180306652912	5.2216625802562	0.0686762544868605	0.839004841384381	0.938856878340637
Merged-chr9-121705048-5	chr9	121704979	121705179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178677)	promoter-TSS (NM_178677)	-50.0	NM_001164562	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	6.84006694911756	7.0305820855467	6.52671971227755	6.86519875061962	7.29896351399901	7.56780355628435	7.4539206563091	7.63395146642274	0.891635016068918	1.13063266875896e-05	0.000307752591700167
Merged-chr8-24715356-3	chr8	24715258	24715458	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324489, intron 5 of 21)	intron (NM_001324489, intron 5 of 21)	10494.0	NM_009619	11497.0	Mm.5168	NM_009619	ENSMUSG00000031553	Adam3	Cyrn1|Taz83|tMDC	a disintegrin and metallopeptidase domain 3 (cyritestin)	protein-coding	4.42318165883576	3.97515708393389	4.14808515105746	4.25749123738683	3.53127468134519	3.91756571585071	3.94189547564833	4.05427904884931	-0.93857417358961	0.0413647311089295	0.20595272772821
Merged-chr11-95384666-5	chr11	95384650	95384850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357797)	promoter-TSS (NM_001357797)	-106.0	NM_016752	110172.0	Mm.4593	NM_016752	ENSMUSG00000020873	Slc35b1	UGTrel1|Ugalt2	solute carrier family 35, member B1	protein-coding	5.38615495320824	5.57780881356053	5.3283513038226	4.43129703509728	5.2884086838336	5.69659753459791	5.03752959481531	5.73179185876569	0.394910857874876	0.313323497715469	0.625190188185603
Merged-chr9-123021319-4	chr9	123021249	123021449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025339)	promoter-TSS (NM_025339)	23.0	NM_001164823	66079.0	Mm.482265	NM_025339	ENSMUSG00000066233	Tmem42	0610027O18Rik|4933429E06Rik|AV003444|D9Ertd662e	transmembrane protein 42	protein-coding	6.42437656846145	6.58519509781585	6.34938767629426	6.81299915304201	6.76490727497163	7.04757656196874	6.92428581847958	6.67131707656715	0.400559849902152	0.0764078589472976	0.298608407545507
Merged-chr15-25862144-4	chr15	25862049	25862249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 1 of 8)	intron (NM_001034851, intron 1 of 8)	18851.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	5.99096216118222	5.64696886396904	5.88231954686253	6.39261214286665	5.81821517728224	5.49712441182998	5.70764649170827	6.00855089076639	-0.40329015575291	0.169671696268817	0.462350663018954
Merged-chr19-25058031-4	chr19	25057934	25058134	+	975.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 2 of 47)	intron (NM_028785, intron 2 of 47)	58505.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	5.73443139627148	5.35697844911806	5.32544409372892	5.60430481730608	5.461812416164	5.23549444539643	5.0326436504116	5.19454832150543	-0.478425156083606	0.113124454010098	0.371758574926268
Merged-chr5-103425164-4	chr5	103425063	103425263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011204)	promoter-TSS (NM_011204)	-29.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	5.63870277436219	5.2068265957416	5.25010823400471	5.53720593956795	5.26986129602954	5.3937120654011	5.63455639159008	5.34057483016947	-0.0267525970204505	0.927823111911514	0.973676684863854
Merged-chr6-140767858-4	chr6	140767760	140767960	+	969.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140975.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	4.75198802851371	4.47796043002259	4.64099395014701	4.81946541882806	4.61280944536141	4.55952748946128	4.49830509831216	4.7496151173834	-0.172823304847945	0.624980335595563	0.839665122417083
Merged-chr16-33347339-4	chr16	33347221	33347421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33415.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	6.15104287809176	6.12286303650229	5.77144120613556	5.68816915692799	6.01752594180272	6.14060251265365	6.23087667123668	6.04723920831176	0.271040913380722	0.288098290393618	0.600045302470442
Merged-chr3-116857826-4	chr3	116857728	116857928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1739.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	6.69822245494732	6.63049308612381	6.3746136397311	6.44440754280626	6.77500587943141	6.51414782408753	6.41368547095919	6.47652021186821	0.035055776717015	0.874505307253601	0.952921542694015
Merged-chr16-33397272-3	chr16	33397164	33397364	+	918.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358570, intron 1 of 8)	intron (NM_001358570, intron 1 of 8)	-3181.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	3.4840624847786	4.06807149925479	3.71508419039071	3.73001944400439	3.89060829872365	3.88628264795417	3.64690384537088	3.54421652624898	-0.0406110282610493	0.934275410437846	0.976332045936076
Merged-chr10-15294322-3	chr10	15294192	15294392	+	849.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-497485.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	3.43309681951562	3.5194019936162	3.06705460002941	3.1695993681932	3.58264642379687	3.31248061363379	3.36603739801408	3.37734486492111	0.398630757593939	0.463265350461284	0.744647770407916
Merged-chr3-108382020-6	chr3	108381926	108382126	+	954.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040560, intron 2 of 2)	intron (NR_040560, intron 2 of 2)	1715.0	NR_040560	100038453.0	Mm.214328	NR_040560	ENSMUSG00000074281	Gm12522	-	predicted gene 12522	ncRNA	4.26578698672065	3.78510774435194	4.34852848294814	3.97265900465289	4.4764931244103	4.20982526687082	3.91350579039268	4.22067595315598	0.317139071402921	0.475994785084352	0.752656510219241
Merged-chr9-14244600-4	chr9	14244486	14244686	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31715.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	6.27472804844129	5.87167554000413	6.14671898014499	6.73186643199641	5.95110117109578	5.28397249253593	5.76037101839937	6.02004069872081	-0.810060579180748	0.00948345858616658	0.0759904422722899
Merged-chr14-61666061-4	chr14	61665960	61666160	+	954.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	16313.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	5.1073238017435	5.04221458858152	5.36746009463446	5.11995457091269	4.9720456571336	4.69210561839703	5.08314568125748	5.00494707917731	-0.406058949667354	0.202002284391592	0.504555588332424
Merged-chr3-37640444-4	chr3	37640354	37640554	+	828.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305441, intron 1 of 1)	CpG	507.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	4.05652470221498	3.76383590446061	4.05714528384774	3.85058080291139	3.90182948145721	3.98294940250905	3.89707509020145	4.18360822362204	0.175800774661339	0.685103842505769	0.871161484283154
Merged-chr18-74283065-4	chr18	74282933	74283133	+	839.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029424)	promoter-TSS (NR_029424)	-67.0	NM_028948	74453.0	Mm.182293	NM_028948	ENSMUSG00000035394	Cfap53	4933415I03Rik|Ccdc11	cilia and flagella associated protein 53	protein-coding	3.84519560942406	3.85276408133283	3.95741913468725	3.76882827053168	4.1378588719041	4.53730446387977	4.55949358531169	4.24245234149403	1.34783599373665	0.00116782444335936	0.0152410297128486
Merged-chr10-61281268-3	chr10	61281173	61281373	+	863.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7835.0	NM_001081127	237360.0	Mm.333252	NM_001081127	ENSMUSG00000059901	Adamts14	Adamts-14|TS14	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	protein-coding	3.38721297294133	3.26727034791094	3.38766627864252	3.32209425434636	3.51599179153606	3.25575347586385	3.57563574578278	3.20875737802303	0.227266945774822	0.664543015700529	0.861009602629657
Merged-chr10-122562682-4	chr10	122562573	122562773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7218.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	6.44650265859924	6.56414347500189	6.80870658292257	6.90938259646323	6.70974005858192	6.56986658331369	6.85307519049033	6.80387136770499	0.0431637018028801	0.844242822504056	0.940887937958057
Merged-chr18-46599069-4	chr18	46598939	46599139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010120, intron 2 of 2)	intron (NM_010120, intron 2 of 2)	1335.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	5.63817966362115	5.64068329560683	5.43879962478296	5.34718448109272	6.3069310597031	6.00941026523706	5.28249130040701	5.8972626990289	0.690327973485666	0.02670828379149	0.155227315423734
Merged-chr13-20128308-2	chr13	20128208	20128408	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	37801.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.24707009333714	3.13189256835183	3.19108818987851	3.21804044055605	3.2217165706109	3.24186268416173	3.17927888325614	3.00415859083359	-0.121244809165086	0.824780436069542	0.932789825291069
Merged-chr13-12256570-3	chr13	12256452	12256652	+	687.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081128, intron 1 of 32)	intron (NM_001081128, intron 1 of 32)	1561.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	3.27477200630492	3.27995128023089	3.92157539586681	3.25592853782684	3.52882830470193	3.45325566993268	3.54858014974736	3.39641611090929	0.0878620677002007	0.873071836370397	0.952427521124774
Merged-chr1-154061515-4	chr1	154061386	154061586	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-139701.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	5.50806206076112	5.64562106562496	5.0610538823228	4.69633068220309	5.21023676774678	5.49316603344555	4.92549367525759	5.28613050513707	-0.055837730011843	0.87982857207936	0.955009601536912
Merged-chr8-31112422-4	chr8	31112341	31112541	+	869.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175136, intron 1 of 5)	intron (NM_175136, intron 1 of 5)	595.0	NM_175136	68867.0	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	4.11092111597775	3.85867691692755	4.57365434449533	4.43396124517675	4.15516745775133	4.18544334107061	4.28011786857526	4.57054536605342	0.0654545204167137	0.881132592709663	0.955322489265647
Merged-chr7-45739547-4	chr7	45739416	45739616	+	856.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360784, intron 1 of 5)	intron (NM_001360784, intron 1 of 5)	2962.0	NM_001360784	54200.0	Mm.271634	NM_017465	ENSMUSG00000003271	Sult2b1	AI326997|BB173635|ST2B1|SULT2B	sulfotransferase family, cytosolic, 2B, member 1	protein-coding	3.6967093646879	4.01166742201259	3.69717325147093	3.87918528009364	4.29535100830237	3.98706045848811	4.21053259873004	3.96475261340025	0.789759601359014	0.0723247544427712	0.288979219941694
Merged-chr7-3825756-1	chr7	3825656	3825856	+	662.333313	f0_c57.idr	intron (NM_001289428, intron 11 of 12)	intron (NM_001289428, intron 11 of 12)	19295.0	NM_011089	18725.0	Mm.482470	NM_011089	ENSMUSG00000089942	Pira2	6M23	paired-Ig-like receptor A2	protein-coding	2.51165787983107	2.37424056677365	2.42709885116655	2.09488666468312	3.19318759540581	3.11633571854229	3.24494817073994	3.16033376216966	6.46597443702617	3.08354111020703e-11	2.56106619233869e-09
Merged-chr5-144254961-7	chr5	144254811	144255011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018772)	promoter-TSS (NM_018772)	-314.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	4.3483072760016	4.38396227038455	4.05512681958872	3.95233867897053	4.4025648703384	4.6054878705972	4.41324380944221	4.65569867576979	0.795962575860874	0.0434729786788906	0.212131565735569
Merged-chr10-59268258-4	chr10	59268151	59268351	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	46329.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	4.98184162751888	5.09293108978566	4.9112814589973	4.68020486739518	5.3616320434044	4.89188898383055	5.08923041567649	4.97930883358073	0.377830592329368	0.255890273362062	0.567467793489678
Merged-chr11-88087091-4	chr11	88087007	88087207	+	770.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10951.0	NR_045499	70393.0	Mm.386799	NR_045499	ENSMUSG00000018378	2210416O15Rik	-	RIKEN cDNA 2210416O15 gene	ncRNA	3.94472290021117	3.78700455565036	3.7949788357143	3.49224680837426	4.11720561690637	3.80364520919391	3.97399695029777	3.98926984198894	0.664903444532325	0.144882238568959	0.424036712956412
Merged-chr6-31157165-2	chr6	31157065	31157265	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 2 of 3)	intron (NR_110471, intron 2 of 3)	61309.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	3.1278447036564	3.54064041928056	3.38444668114283	3.36673474716257	3.33917256153048	3.71659580252975	3.53366597414422	3.49413773590407	0.52839143754787	0.312557695108803	0.624504855620566
Merged-chr3-121953199-4	chr3	121953108	121953308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172525)	promoter-TSS (NM_172525)	-21.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	6.74778579404874	6.43005001969684	6.27948893655005	6.71659665609268	6.80630747784303	6.57331940061569	6.99966025519317	6.29512666864333	0.193420461954579	0.436243902097794	0.72505818409614
Merged-chr6-34964701-3	chr6	34964604	34964804	+	753.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025573, intron 2 of 7)	intron (NM_001025573, intron 2 of 7)	13295.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	3.68904069256471	3.58560256658802	3.78596325273206	3.29221360614322	3.20179391468276	3.70467379801357	3.39930974694788	3.82904923893343	-0.131173111022158	0.810423267422716	0.926814284727818
Merged-chr17-46253868-4	chr17	46253789	46253989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111142)	promoter-TSS (NM_001111142)	-276.0	NM_001111142	224813.0	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	6.99866649693984	7.13380487200832	6.67699371824338	6.90956991620743	7.17802787816248	7.0734700605644	6.62697083459209	7.03152141490651	0.0797732376683126	0.715831730473845	0.886371813543908
Merged-chr15-66785642-4	chr15	66785548	66785748	+	914.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 6 of 7)	intron (NM_001029841, intron 6 of 7)	46181.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	4.23948650890186	4.19611513772748	4.75107367208169	4.8264611998807	4.38580543955049	4.15656975803134	4.22196725258651	4.41747794903719	-0.567156739782677	0.176966240045242	0.472190613897243
Merged-chr4-70515665-4	chr4	70515585	70515785	+	920.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172694, intron 1 of 5)	intron (NM_172694, intron 1 of 5)	19243.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	4.58845251890098	4.43325089844141	4.9969481514968	4.27028276008521	4.97347848029176	4.92782262530909	5.22701201917636	4.74964154223817	0.823753623913009	0.0275147459269922	0.158234798443676
Merged-chr7-101214003-3	chr7	101213907	101214107	+	922.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199012, intron 8 of 20)	intron (NM_199012, intron 8 of 20)	88081.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	3.44893678722711	3.76730181898252	3.84182677154558	2.99621275219817	4.10620659713524	3.75302044926794	4.00316365762143	3.73879708891382	1.06296564420064	0.0567673368455748	0.249591838243941
Merged-chr3-41377076-1	chr3	41376976	41377176	+	824.0	f0_balb.idr	Intergenic	Intergenic	116123.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	3.69266573956989	3.5009765673866	4.07689351378199	4.0320088472552	3.20717234741947	3.33271467906497	3.27670070254993	3.41468265095749	-1.87466722722582	0.000702613636470855	0.0101582633462703
Merged-chr7-101541297-4	chr7	101541178	101541378	+	878.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14524.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	4.10897535254447	4.36545812005515	3.53072121995644	4.20376499130711	4.2256905454243	4.23460874998859	3.99547274451847	4.24042238833774	0.213312022396221	0.650912485089211	0.853561160209376
Merged-chr17-31520058-4	chr17	31519948	31520148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030087)	promoter-TSS (NM_030087)	-67.0	NM_030087	78330.0	Mm.28349	NM_030087	ENSMUSG00000024038	Ndufv3	1500032D16Rik	NADH dehydrogenase (ubiquinone) flavoprotein 3	protein-coding	8.70524807890444	8.54789680057915	8.65126783546187	8.35347156566671	8.30684318910667	8.49103042854876	8.69975264186284	8.32488421734928	-0.12904308266564	0.455752471254062	0.739120645964751
Merged-chr13-101843779-3	chr13	101843694	101843894	+	744.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-75577.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	3.64655680963853	3.60260518341184	3.92962854036859	3.89099713653912	3.75625890949075	3.25029706338257	3.46588646396601	3.64502201046922	-0.704800742309393	0.176816920266972	0.472026837478258
Merged-chr10-87830868-4	chr10	87830753	87830953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-27412.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	7.01304032777529	7.26668033275876	7.61413292090728	7.38803775303241	7.05196698790134	7.1260892375479	7.07714053548123	6.90231943589942	-0.407010863157254	0.0465201625410939	0.221678989225021
Merged-chr9-50499105-4	chr9	50499011	50499211	+	790.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029639, exon 2 of 4)	exon (NM_029639, exon 2 of 4)	4586.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	3.54518997873301	3.37028951383061	3.54566343387805	3.7852707587514	3.46682448551827	3.66157352009097	3.53196973310587	3.74681110872914	0.0589873840939921	0.906593018101208	0.965374636270914
Merged-chr6-137405910-4	chr6	137405813	137406013	+	975.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 12 of 26)	intron (NM_011216, intron 12 of 26)	-4808.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	5.14733579610143	4.88560955990395	5.29841356029159	5.30952429167517	5.2940126524811	4.96047056601552	5.1229990405805	5.01034046558615	-0.121240364457124	0.702241004598074	0.880056958725802
Merged-chr13-81741224-4	chr13	81741117	81741317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028372, intron 1 of 1)	intron (NM_028372, intron 1 of 1)	29800.0	NM_028372	72852.0	Mm.31095	NM_028372	ENSMUSG00000051098	Mblac2	2900024O10Rik	metallo-beta-lactamase domain containing 2	protein-coding	6.54532934638788	6.6022619640901	7.2911941504837	7.29117791105622	7.12414957585891	7.11795086149468	6.94428854987574	6.8415434863055	0.0303544436156657	0.904268735878745	0.964559678221358
Merged-chr5-81137300-4	chr5	81137183	81137383	+	822.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 2 of 27)	MTD|LTR|ERVL-MaLR	115690.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	3.88525605913112	3.32998851572457	3.36590014546002	3.66039454033908	4.02240325037402	3.90809860211358	4.04451988601794	3.97535071397605	1.17310894804292	0.0164574375298197	0.112084479039811
Merged-chr11-103419360-4	chr11	103419260	103419460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6696.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	4.96129962131626	5.23627639858723	5.6703174158858	5.1111531932666	5.49640296292258	5.6122459473819	5.43806342528234	5.84187337828152	0.597346562891754	0.0538299351595407	0.242181970464632
Merged-chr5-38684662-4	chr5	38684542	38684742	+	987.020874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081144, intron 1 of 3)	CpG	184.0	NM_001177902	100515.0	Mm.38277	NM_001081144	ENSMUSG00000046572	Zfp518b	6820424L24Rik|AA410078|AI661722|Znf518b	zinc finger protein 518B	protein-coding	4.73641138351669	4.66148084742824	5.28822822045182	4.9470765084831	4.14059835199454	4.87340484783	4.67602062780355	4.61354495385862	-0.710169879817201	0.072952194646416	0.290677578523133
Merged-chr5-23493413-4	chr5	23493314	23493514	+	782.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026984, exon 16 of 26)	exon (NM_026984, exon 16 of 26)	58985.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	3.5637734594944	3.80514880013604	3.68972068689562	4.45512528063101	4.28931701862746	3.92532981847195	3.78969652635584	4.13914683636616	0.278926052994445	0.604516788639059	0.828485859893348
Merged-chr16-43364317-4	chr16	43364229	43364429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	55867.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	6.11216490566867	5.66932108441795	5.65889267424856	6.11450822068542	5.8195737561411	5.98854505322404	5.98334000160933	5.62731978557145	-0.0949968172048668	0.727625357479829	0.891575922190683
Merged-chr9-77751315-4	chr9	77751210	77751410	+	987.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3225.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	5.48489825610499	5.1229291321584	5.75845478524138	5.63175964271775	5.61106557846456	5.24443732701785	5.07695184650868	5.79803521993107	-0.0904743367838672	0.781669888969625	0.915046395417553
Merged-chr8-11005037-3	chr8	11004903	11005103	+	589.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081212, exon 1 of 2)	exon (NM_001081212, exon 1 of 2)	-2847.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	2.99531402342501	2.92614385293052	2.8253450311136	2.860859891653	2.87399924454387	2.7325201117157	2.55036676947654	2.55543890203626	-1.00448912552712	0.138751227476171	0.414381792154761
Merged-chr11-32563810-4	chr11	32563701	32563901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	30535.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	7.15444656462182	7.18611766169606	7.19975609230262	7.42097250068033	7.02826109083404	6.98635527419551	6.83296843704413	6.87641148603609	-0.43948346809487	0.022322023328965	0.137780542331166
Merged-chr19-32665469-4	chr19	32665346	32665546	+	937.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011864, exon 13 of 13)	exon (NM_011864, exon 13 of 13)	45441.0	NM_011864	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	4.25651176345011	4.75227280057065	4.74481111411011	5.04106112636452	4.51254202373721	4.76226503389239	4.89300784421316	4.54243609313876	-0.134141069747139	0.731242327728163	0.893516062029851
Merged-chr11-70587181-4	chr11	70587070	70587270	+	873.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	RMER15|LTR|ERVL	24289.0	NM_016713	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	4.75328220538303	4.82732313561378	4.44485212754445	4.04136373213752	5.32007268084521	5.79987785510366	4.56446805377142	4.44202209723829	1.1778715359945	0.0120912728012762	0.0904608689007822
Merged-chr4-141810047-1	chr4	141809947	141810147	+	776.0	f1_c57bl6.idr	intron (NM_001277932, intron 6 of 7)	intron (NM_001277932, intron 6 of 7)	15958.0	NM_007919	13706.0	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	3.28121449217706	3.27632752184604	3.3410672526369	3.22501109531436	3.52657619694371	3.51241405760803	3.58706478374725	3.27999154631244	0.721038503492305	0.155411153117987	0.440985819425086
Merged-chr8-46928882-4	chr8	46928791	46928991	+	991.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57996.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	4.90255989668105	5.36786758447569	5.43373624216402	5.26009075865487	5.20722543486829	5.16173182264898	5.40639289417211	5.60638268647081	0.173372942050892	0.575746492095187	0.813185666420437
Merged-chr13-93237815-4	chr13	93237711	93237911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45394.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	5.6054485247128	5.43788915230753	5.52649497843636	5.71784671440975	5.61123331789783	5.72770422604354	5.55225375136788	5.28134820047111	-0.0542647251716547	0.8446644721817	0.941125889580383
Merged-chr2-30942788-4	chr2	30942669	30942869	+	975.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10232.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	4.6569708676342	5.06115037440192	4.77035083553412	4.78841866480499	4.41125886397038	4.66652562749663	4.37869656448553	4.61486811422107	-0.676924860525644	0.0589332548679025	0.255640815908491
Merged-chr1-189701224-3	chr1	189701124	189701324	+	792.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13138.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	3.60899391201237	3.42954781602119	3.60946997395982	3.53083288823792	3.87658789816645	4.21886907220368	3.85693441029492	3.91854931434395	1.25793947629934	0.00607060048376205	0.054727907255101
Merged-chr11-118232284-4	chr11	118232211	118232411	+	978.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	16281.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	5.06792316514649	4.74571424100442	4.82602320977308	4.47472172800065	5.00683372836982	4.79972519260175	4.87652684994732	5.46588521558215	0.565867007158305	0.119456568063792	0.38243202687831
Merged-chr18-75000574-4	chr18	75000467	75000667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028552).2	promoter-TSS (NR_028552).2	90.0	NM_001002239	319195.0	Mm.276337	NM_001002239	ENSMUSG00000062328	Rpl17	-	ribosomal protein L17	protein-coding	6.83611798587458	7.09664378363922	7.45656969391677	6.66932277884642	6.96206750032238	6.91242347081348	6.7742574320668	6.80403992103123	-0.238478141391679	0.314856714212313	0.626803278913516
Merged-chr10-62582824-3	chr10	62582744	62582944	+	906.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019553, intron 14 of 14)	intron (NM_019553, intron 14 of 14)	-4387.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	4.01100315922048	4.02659650857951	3.76974760078919	3.79543513054075	3.41216889009624	3.77789840150271	3.99343673386596	3.81968099112985	-0.41384337433861	0.390596169138063	0.69058015678842
Merged-chr11-69692366-4	chr11	69692272	69692472	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011614, intron 5 of 6)	L2|LINE|L2	3726.0	NM_011614	21944.0	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	5.52307897040422	5.85563585683683	6.26758981477586	6.24987498416795	5.35711651215421	5.18427439995656	5.43743559938643	5.60404203032842	-1.02485459512871	0.000731009178013837	0.0104797031768856
Merged-chr8-48110113-4	chr8	48110031	48110231	+	872.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027759, exon 1 of 6)	non-coding (NR_027759, exon 1 of 6)	118.0	NM_001161515	320685.0	Mm.121549	NM_178788	ENSMUSG00000031562	Dctd	6030466N05Rik	dCMP deaminase	protein-coding	4.69318932608593	4.52628462998254	5.15009341902416	4.94935473816546	4.53429022716483	4.78826152593303	4.46128568342012	4.76698074423737	-0.450516722032657	0.220342403111636	0.528196945781266
Merged-chr2-11212183-4	chr2	11212082	11212282	+	997.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	39800.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	4.87600127729031	5.34471399927692	5.20306378588561	4.90647330006918	5.43438413361829	5.63435657396216	5.20877890299593	5.32143613018153	0.583797512052774	0.0606351326546657	0.260152866618826
Merged-chr9-123523852-4	chr9	123523755	123523955	+	786.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5898.0	NM_001357485	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	3.40135503119001	3.32832281988939	3.28617341755161	3.31650456033779	3.5293161386827	3.39849802374743	3.58986944013173	3.22278858618344	0.39677320198072	0.440138903679981	0.727657961132312
Merged-chr17-10822760-3	chr17	10822660	10822860	+	710.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 1 of 4)	intron (NM_027032, intron 1 of 4)	17431.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	3.44611655031146	3.31942175155945	3.39250459358711	3.33775102224947	3.35637194288732	3.19185609905313	3.48393454068467	3.44465763612002	0.0118166973614957	0.981681032774736	0.993486848211705
Merged-chr18-74911075-3	chr18	74910974	74911174	+	572.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	50189.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	3.10277230143284	3.32430700780929	3.40634374520503	2.94665314629324	3.40463133970804	3.40796113523983	3.6346871126292	3.29150156575909	0.877308914061104	0.112062597663139	0.369967701255315
Merged-chr16-14358727-4	chr16	14358611	14358811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2847.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	5.95521011150443	6.20034968853597	5.81387651875872	5.97791023218326	6.21719318168633	6.08657990006356	6.2399376355381	5.49924307126311	0.0833861516310083	0.761713139577419	0.906640015417487
Merged-chr11-74494587-4	chr11	74494494	74494694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	95564.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	5.47138707534078	5.54700964994232	5.09797135560898	5.25943548192168	5.49027152336992	5.34513632423757	5.41775374222438	5.38481178919309	0.112375988919587	0.696178777835072	0.877126859863619
Merged-chr14-64752987-4	chr14	64752852	64753052	+	836.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 21 of 39)	intron (NM_001081177, intron 21 of 39)	100421.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	3.35865235657496	3.2451896810489	3.4153913316444	3.44970516290805	3.63799335312661	3.47200248157345	3.22788320986519	3.413549559754	0.272028478415132	0.601947487211053	0.827350609957033
Merged-chr19-34206363-4	chr19	34206257	34206457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	-11151.0	NM_001360719	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	5.68764160197577	5.80889541260912	5.41837683477114	5.71046601158053	5.45040132980947	5.56439345969334	5.65978595141901	5.28827131044712	-0.298118653453902	0.280043865056376	0.592123403958168
Merged-chr16-44016386-4	chr16	44016286	44016486	+	958.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153528)	promoter-TSS (NM_153528)	50.0	NM_153528	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	4.90148650383632	4.68526756482584	5.52896228672195	5.26152203977606	4.73430160907175	5.00302570258375	4.87881361595968	4.86162759215735	-0.527697648686473	0.14185680315993	0.419040693203243
Merged-chr1-39530422-4	chr1	39530310	39530510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5291.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	5.95112272672832	5.90420714720087	5.56114959702726	5.85007147565353	5.69076152639921	5.45537622628615	6.00254786565059	5.74317803863637	-0.146279603891338	0.588343941535115	0.819675135431917
Merged-chr14-14684940-4	chr14	14684837	14685037	+	986.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18088.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	4.98797311081463	4.82603442631948	4.72736098380726	5.39712648928184	4.85414153426489	4.86299998786513	4.78513026870046	5.11360035652825	-0.249049640927206	0.486390233329659	0.76011088366241
Merged-chr12-51678947-4	chr12	51678844	51679044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172098, intron 1 of 15)	RSINE1|SINE|B4	-12022.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	6.06267758462837	5.88135323101961	5.73324000741918	5.98635782849287	5.95823589416928	5.53522344805969	5.7042282398781	5.50993576334698	-0.358875289290194	0.18204000651135	0.478744830221339
Merged-chr2-128747689-4	chr2	128747607	128747807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	48792.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	7.3160959780867	7.64070637208302	7.96703709862525	7.39924641239819	7.09419250768829	7.39656856457466	7.08857442447161	7.29104379072202	-0.510141442737771	0.0174379636714889	0.116696475463923
Merged-chr10-99273223-1	chr10	99273123	99273323	+	850.0	f0_balb.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	9992.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	3.61055096946735	3.58776072242436	3.15684742332656	2.71217814575561	3.02494325376206	3.00248830569437	3.08346863857367	2.88893833925484	-1.22475847549314	0.0707018216807914	0.285078171722486
Merged-chr7-19076077-4	chr7	19075959	19076159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010058)	promoter-TSS (NM_010058)	-141.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	6.51315575140301	6.18703393173439	6.26665011992511	6.29824285723081	6.86918016525747	7.02393574343928	7.45875441182698	6.98073348454738	1.11121512522865	1.08440666163288e-06	3.77257975407462e-05
Merged-chr17-40716462-3	chr17	40716382	40716582	+	989.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-10638.0	NM_001038500	619517.0	Mm.391018	NM_001038500	ENSMUSG00000073396	Esp1	EG619517|Gm6084	exocrine gland secreted peptide 1	protein-coding	4.05010016011478	3.77529882612474	3.98722176919608	3.90908640062037	5.04374609402526	4.98059631240504	5.4111033201023	5.47908571250659	2.85523960916594	5.3395308600263e-13	6.02317697441858e-11
Merged-chr14-27096492-4	chr14	27096382	27096582	+	873.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134437, intron 11 of 12)	intron (NM_134437, intron 11 of 12)	-47511.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	3.87800104938506	3.81827084747842	3.92787829578132	3.99255271620805	3.92087398999597	3.99881041283168	3.91135752151194	3.82517323379298	0.007561124967812	0.985969765900169	0.994788540667462
Merged-chr9-35056807-4	chr9	35056694	35056894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-59934.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	6.37197034429391	6.2882427093418	6.35516991196226	6.28584832251483	6.49403061883481	6.49427033220311	6.45867611793414	6.25714783139159	0.165122429322053	0.441605058128878	0.728560319686524
Merged-chr12-40273502-4	chr12	40273411	40273611	+	971.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50147.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	5.35677501350273	5.38477718969615	4.67796302410917	5.45102507161684	5.4367016804737	5.03301919982656	4.98445838730592	5.20712771354109	-0.139744064635659	0.68700155120371	0.872022893505377
Merged-chr18-12741283-4	chr18	12741177	12741377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181731)	promoter-TSS (NM_181731)	-78.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	7.88579278510224	8.0030135711018	7.85712733446306	8.01943582448845	8.15748646989962	8.19127123719353	7.93472356241347	7.92544071357959	0.144140383685267	0.383906843162287	0.685555904565125
Merged-chr3-61688477-4	chr3	61688375	61688575	+	943.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	323968.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	4.78386554625487	4.85342835901814	4.85821843852316	5.15516639297117	4.55853460939848	4.99463339633173	4.68480403937066	4.74310539610308	-0.395000140514411	0.25572327605462	0.567362604148488
Merged-chr2-122739312-3	chr2	122739211	122739411	+	644.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019788, intron 1 of 4)	intron (NM_019788, intron 1 of 4)	806.0	NM_019788	18457.0	Mm.268921	NM_019788	ENSMUSG00000005804	Bloc1s6	BLOC-1|Pldn|Stx13bp1|pa	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin	protein-coding	3.81352134092456	4.05063242430768	3.71579618959696	3.50008006981654	3.72207233464152	3.54706135748013	3.41979973571637	3.60736442870933	-0.602728482889156	0.235632485602491	0.54561108304163
Merged-chr15-12204961-4	chr15	12204852	12205052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172958)	promoter-TSS (NM_172958)	-76.0	NM_001356498	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	9.546138783954	9.57083645961262	9.84409759503389	9.84271072298447	9.4970355239774	9.62469869056338	9.78944864346785	9.40020920924885	-0.152980466187847	0.338876628611636	0.648184761990371
Merged-chr1-6499054-3	chr1	6498968	6499168	+	763.366699	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001244693, intron 2 of 22)	L1MA9|LINE|L1	11837.0	NM_001244692	240690.0	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	3.59545626011039	3.88125677173516	3.47811094112178	3.15142587549641	3.7377657578521	3.53248327075755	3.96398293278602	3.89414433869923	0.746801968103101	0.158898353159022	0.446088552276769
Merged-chr11-97362867-5	chr11	97362793	97362993	+	862.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_138657, exon 1 of 10)	exon (NM_138657, exon 1 of 10)	342.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	4.03806234091844	3.74428364221212	3.84802433649818	3.46044217553387	4.03517720972425	3.86195652261671	3.72624097889709	4.20155557468659	0.552942046213372	0.247111234097726	0.558168726560377
Merged-chr9-71757078-1	chr9	71756978	71757178	+	656.5	f0_balb.idr	intron (NM_026599, intron 1 of 18)	intron (NM_026599, intron 1 of 18)	14524.0	NM_026599	68178.0	Mm.99961	NM_026599	ENSMUSG00000032232	Cgnl1	4933421H10Rik|9930020M10Rik|AI503810|Jacop	cingulin-like 1	protein-coding	3.08781380040983	3.16852674529961	3.19927630833897	3.34727137840829	2.78221478572736	2.86570769515587	3.01814687305747	2.90003638132075	-1.40691852572825	0.0219505856534182	0.136348785777524
Merged-chr13-107168867-4	chr13	107168781	107168981	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146311.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	4.90025448556137	4.74545810179801	4.71435302911852	5.2409940297058	4.65178673840831	4.76526258314197	4.97668634836932	4.75083857193806	-0.309526923896465	0.383725627476548	0.685515575911105
Merged-chr11-118476890-4	chr11	118476802	118477002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359368)	promoter-TSS (NM_001359368)	70.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	7.95192475011067	8.17051817959089	8.04879838107006	8.01584387761864	8.05738783999156	8.08737165777715	8.08672983911271	8.08226350007909	0.0366657638474233	0.812711483427223	0.927656717651261
Merged-chr10-78009364-4	chr10	78009273	78009473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358793, intron 1 of 21)	CpG	434.0	NM_008826	18641.0	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver, B-type	protein-coding	7.05815034496858	7.01011126297977	6.97160601279972	7.02783856707863	7.0087011516646	7.1615085007398	7.47443638701617	6.88627808139914	0.180362682078268	0.381983442018922	0.684194353644149
Merged-chr12-56345878-4	chr12	56345772	56345972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145442)	promoter-TSS (NM_145442)	22.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	7.48949522660576	7.6820096714832	7.39119334611266	7.62364799639692	7.84266065532395	8.0165066565152	7.58931553200428	7.51398735358297	0.263155840583375	0.1700904498339	0.46307659016619
Merged-chr1-20064443-1	chr1	20064343	20064543	+	1000.0	f0_balb.idr	intron (NM_153179, intron 66 of 66)	intron (NM_153179, intron 66 of 66)	-292011.0	NR_045734	75028.0	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA	3.37685846057304	3.35894529658623	3.817370947928	3.93879749665803	3.26678664364452	3.30197499513573	3.11155712276043	3.25351611419818	-1.49334786691808	0.00946846889367019	0.0759045103482994
Merged-chr4-43038031-2	chr4	43037931	43038131	+	910.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	2270.0	NM_001253353	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	3.60184417066417	3.56666286053633	3.94437366946012	3.32430684361516	3.63531296831123	3.82973834478901	3.64225900597764	3.75798563529339	0.313656626126265	0.53003033654351	0.786127176446219
Merged-chr5-105558787-4	chr5	105558692	105558892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	39321.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	6.59122792729287	7.00770307886585	6.08929755053667	6.17964619766583	6.91649727054173	6.90463256619611	6.76354865572409	6.58767642394873	0.407614997479816	0.130368786725572	0.40193242336713
Merged-chr7-127077133-4	chr7	127077031	127077231	+	924.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14305.0	NM_178901	101602.0	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	4.71691866732214	4.88568838499739	4.71766278852188	5.42348468050652	5.03582464220523	4.89628567890926	5.06203860846208	5.31666271026475	0.167630874251825	0.649400305639317	0.85269354452399
Merged-chr1-94079304-4	chr1	94079214	94079414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26761.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	6.1995951698617	6.4528266382321	6.35223808418878	6.74815686906803	6.13203550181874	6.11184187619843	6.12830002103566	6.4000832345579	-0.414549767077129	0.0900009211752294	0.327603598428168
Merged-chr18-33214838-3	chr18	33214741	33214941	+	868.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133774)	promoter-TSS (NM_133774)	-979.0	NM_001347624	170459.0	Mm.127058	NM_133774	ENSMUSG00000024378	Stard4	4632419C16Rik|9030213J02Rik	StAR-related lipid transfer (START) domain containing 4	protein-coding	4.07933760466211	3.94606650468664	4.03714043441535	3.94306053248762	3.94278674193094	3.62080929279181	3.6744412959035	3.6863018316286	-0.718987894485856	0.117348197767036	0.378843038460189
Merged-chr9-116177464-3	chr9	116177367	116177567	+	741.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2104.0	NM_029575	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	3.1467162290124	3.08966026573213	3.14711696254796	3.31101270447901	3.18027977796938	3.00062337424555	3.01726735727011	3.08700130595306	-0.421940503938642	0.458534948496563	0.741437053590115
Merged-chr16-32179670-4	chr16	32179548	32179748	+	647.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033539)	promoter-TSS (NM_001033539)	-152.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	4.08809481677079	3.75122783345564	3.90020470167827	3.72620730283905	4.10245031305278	3.85816463766343	3.98059073016867	4.12914097472962	0.453047074879806	0.299365865085359	0.611562066856898
Merged-chr15-72837558-3	chr15	72837438	72837638	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164641, intron 17 of 17)	intron (NM_001164641, intron 17 of 17)	-27214.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	5.2532838538297	5.4158306469324	5.3132967435201	5.10706170741166	5.42206651387683	5.00722877546994	5.13479999707747	5.08966154100764	-0.148789615593212	0.62964638983059	0.842339368939137
Merged-chr17-15804581-4	chr17	15804417	15804617	+	966.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22069.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	4.71962611669585	4.5103852384154	4.82117122186944	4.44147854265389	4.46987226982168	4.28548695023286	4.29248568430192	4.60775820377517	-0.441973794126448	0.243717056944244	0.554713292984908
Merged-chr1-191131910-4	chr1	191131813	191132013	+	835.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32904.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	4.19687702712604	3.81135820685816	4.35732281161971	3.9943516019027	3.7451643270618	4.13913811302864	3.84289278524245	4.23668063468408	-0.260957727953315	0.569154969784874	0.809298845225889
Merged-chr2-18676719-4	chr2	18676646	18676846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007552)	promoter-TSS (NM_007552)	-272.0	NM_007552	12151.0	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	6.35124589747587	6.75284390116624	6.65626443357371	6.24425950809573	6.3932488385117	6.33444253061588	6.16683871012208	6.04243600485681	-0.390653506873573	0.112708229422881	0.371238272193025
Merged-chr19-44135825-4	chr19	44135723	44135923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356578)	promoter-TSS (NM_001356578)	53.0	NM_001081077	72502.0	Mm.276109	NM_001081077	ENSMUSG00000025200	Cwf19l1	-	CWF19-like 1, cell cycle control (S. pombe)	protein-coding	5.63654611382555	5.39683955562419	5.53414737111034	5.53665469220605	5.78094253203497	5.40926174932003	5.36505549900395	5.44684342530412	-0.00139024408529436	0.996055190782687	0.998543856884531
Merged-chr5-90964929-4	chr5	90964808	90965008	+	880.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026788, intron 5 of 7)	intron (NM_026788, intron 5 of 7)	33712.0	NM_026788	665563.0	Mm.153030	NM_026788	ENSMUSG00000029376	Mthfd2l	1110019K23Rik|C630010D07Rik	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	protein-coding	4.61277330705611	4.44257640160457	4.33300890463552	4.60517730330409	4.14905559661849	4.36726551594218	4.44040835320602	4.23754487878618	-0.505616901977011	0.185630456474647	0.483574244399563
Merged-chr2-157428598-4	chr2	157428504	157428704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 1 of 13)	intron (NM_001025395, intron 1 of 13)	4311.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	7.27084114195251	7.7320747791431	7.38966381049991	6.78645965158039	7.11668274729822	7.39673599301241	6.62877460357562	6.29510946689359	-0.553236273490403	0.0643353303238817	0.269530575463424
Merged-chr10-19570389-4	chr10	19570310	19570510	+	973.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21539.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	5.41351188137221	5.75101617501174	5.65153131898211	5.20918855663672	5.82886241106541	5.37165582921853	5.23476713329584	5.00584634959848	-0.179442597094847	0.595137375272808	0.8237808613761
Merged-chr19-32170402-2	chr19	32170302	32170502	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	40611.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	2.86764937180603	2.93851113387549	2.80001642795373	2.47096011084498	3.0092844670754	3.16675974660505	2.92191378200127	3.21351032437167	1.362750574811	0.0345117141587848	0.183804269597508
Merged-chr2-160267520-3	chr2	160267426	160267626	+	878.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	59968.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	3.14526930194551	3.38546663466304	3.30905713269293	3.18969345178705	2.98622217195635	2.84671395265946	3.01393155972951	3.08469280276122	-1.1247403019944	0.0570633220281042	0.250351959975249
Merged-chr8-111992270-4	chr8	111992167	111992367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357186)	promoter-TSS (NM_001357186)	35.0	NM_001357184	30947.0	Mm.282162	NM_013925	ENSMUSG00000031949	Adat1	MMADAT1	adenosine deaminase, tRNA-specific 1	protein-coding	6.65160503503087	6.68527332857771	6.45144490848776	6.75626999948771	6.8208092882608	6.82935257217221	7.08915186069951	6.48267478173653	0.248166777411436	0.264440386045845	0.576455127446606
Merged-chr17-34883533-4	chr17	34883432	34883632	+	997.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1432.0	NM_013484	12263.0	Mm.283217	NM_013484	ENSMUSG00000024371	C2	-	complement component 2 (within H-2S)	protein-coding	4.90394310707668	5.36022416728978	4.78239813413822	4.74506430849927	5.36413350906572	5.44706225790108	5.27688480930214	5.21129522404456	0.678401104819506	0.0370953243340472	0.192085558764233
Merged-chr10-8766234-4	chr10	8766183	8766383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	119787.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.31263231182623	5.48966605269573	5.4682019625512	5.19278402647166	4.79968888529772	4.99495212759179	4.47784230574711	4.59337249189083	-1.23695763670974	0.000255541079068637	0.00444613993327464
Merged-chr16-87654395-4	chr16	87654310	87654510	+	965.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44544.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	5.46792595762251	5.14001786335482	5.24674729028087	5.35095228566548	5.4166180031503	5.07834638776146	4.83692468758801	5.08153013153752	-0.318311891653014	0.317741099376015	0.629628252035918
Merged-chr11-114959220-2	chr11	114959120	114959320	+	857.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199225, intron 2 of 3)	RSINE1|SINE|B4	1197.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	2.68527058156198	2.52629007674978	2.62997072424784	2.22308287317637	2.54544691559957	2.25514623350517	2.22769970075342	2.15310652739759	-1.25645485886025	0.135413791400194	0.409658271465803
Merged-chr2-33130722-1	chr2	33130622	33130822	+	1000.0	f0_balb.idr	promoter-TSS (NM_001355200)	promoter-TSS (NM_001355200)	-103.0	NM_001355200	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	7.89730167433301	8.0559149586916	7.45253925508889	7.42161803709962	8.02617924647382	8.28198408436487	8.01593504894209	7.9702210641826	0.448456796030167	0.0310444981513113	0.171256012858419
Merged-chr11-40714070-3	chr11	40713970	40714170	+	970.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013552, exon 11 of 18)	exon (NM_013552, exon 11 of 18)	-18867.0	NM_001199274	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	5.07808932773768	4.43820254720324	5.07898855790557	5.36927097839168	4.17794043952461	4.40779220297528	4.30838334714664	4.27290014446294	-1.66286806513764	4.53975759709366e-05	0.00104045850929087
Merged-chr1-138134421-3	chr1	138134312	138134512	+	854.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	40714.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	3.7733791963307	3.58265674235472	3.67228501599178	3.81467708890669	3.64955084566809	3.89330830849789	3.36625753896815	3.72196770262648	-0.152340863245342	0.754742933030895	0.903419612044162
Merged-chr1-133087782-3	chr1	133087694	133087894	+	831.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099276, intron 15 of 32)	intron (NM_001099276, intron 15 of 32)	41782.0	NM_001099276	240752.0	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding	3.38421202115615	3.25934847592787	3.384681945463	2.74790804442338	3.46508912989245	3.66625441179541	3.42653549237617	3.54426411480712	1.11016175295842	0.0595860300430161	0.257343245703043
Merged-chr3-108389379-4	chr3	108389268	108389468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5530.0	NM_019976	56742.0	Mm.389499	NM_019976	ENSMUSG00000068744	Psrc1	5430413I02Rik|AL033312|Dda3	proline/serine-rich coiled-coil 1	protein-coding	7.03739794105381	6.87763085884313	6.55966572641276	6.81944764567293	6.99090095119497	7.11729820975017	6.71589138154539	6.60536088100742	0.0578738878889869	0.794911785394714	0.920675377060179
Merged-chr8-105637983-3	chr8	105637867	105638067	+	624.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151743)	promoter-TSS (NR_151743)	-493.0	NR_151742	546100.0	Mm.471801	NR_151742	ENSMUSG00000098120	Gm5914	-	predicted gene 5914	ncRNA	3.08432941409373	3.03595470172865	3.25666909282958	3.37025968419235	2.78831740230365	3.06507651217531	3.39264612050362	2.95477664455341	-0.51975198442597	0.404302628575611	0.701411705444497
Merged-chr5-146947777-3	chr5	146947795	146947995	+	789.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025652)	promoter-TSS (NM_025652)	-762.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	1.76333407847832	1.65079697189697	1.67968956032678	1.51333148430903	2.07986966908303	2.09459445696412	2.11022924288088	2.05475557540438	5.27369675737501	1.85210035042044e-06	6.11175942710136e-05
Merged-chr13-73763602-4	chr13	73763486	73763686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011390)	promoter-TSS (NM_011390)	-74.0	NM_001360694	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	6.98154076892511	6.95785695868833	6.88047143950798	7.01288168084048	6.86950432400353	7.00250767014287	6.42385809363039	6.70467026253857	-0.270583880515943	0.201071147698919	0.503307188847283
Merged-chr1-138967548-4	chr1	138967386	138967586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181347)	promoter-TSS (NM_181347)	-235.0	NM_181347	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	4.63286874213409	4.28231546209696	4.78174968444615	4.48230282159907	4.86737640376159	4.6848282010016	4.53173044914956	4.74313493467755	0.369354289990939	0.307533240679867	0.619864884701598
Merged-chr5-21545484-4	chr5	21545389	21545589	+	883.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199632, intron 11 of 20)	intron (NM_001199632, intron 11 of 20)	1962.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	4.14231630978154	3.97525021512055	4.14294642601084	4.04176350351248	4.19238374234698	4.0170473245667	4.29128834169934	3.94662265216028	0.131932784262049	0.748777435950507	0.901063951017401
Merged-chr7-125638980-4	chr7	125638884	125639084	+	960.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35555.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	5.53102914859464	5.45336197528404	5.67873884659162	5.54516350902553	5.58030590866727	5.28228634836421	5.14932001255882	4.90545617160318	-0.501533297126474	0.104653277021128	0.355749855460871
Merged-chr1-172590608-4	chr1	172590505	172590705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029084)	promoter-TSS (NM_029084)	-37.0	NM_029084	74748.0	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	7.04306040235947	7.38684226514537	7.31920178140921	7.17046677182054	7.68792752194313	7.55603829907462	7.13001755554935	7.32440484519573	0.287859142158415	0.162267343788558	0.451435886782433
Merged-chr15-76307410-4	chr15	76307309	76307509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153122)	promoter-TSS (NM_153122)	-164.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	5.76509375562213	5.56213290218581	5.8594645773085	5.90483676196865	5.88409277043123	5.61427724973962	5.8517793781237	5.60775503187199	-0.0535204709741908	0.838788291918097	0.938853173799904
Merged-chr5-150611835-4	chr5	150611728	150611928	+	822.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362416, intron 6 of 7)	L3|LINE|CR1	-17303.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	4.64280765479975	4.08725678724905	3.97012613341186	4.12120174877853	3.87415540909353	4.43801512697882	4.24632827057608	4.34808837755662	0.025014870407059	0.955405324911313	0.984123580734412
Merged-chr11-70675265-1	chr11	70675165	70675365	+	761.75	f0_balb.idr	intron (NM_001190379, intron 12 of 20)	intron (NM_001190379, intron 12 of 20)	-5849.0	NM_001167669	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	4.55570663827807	3.83291705654456	4.38146250672672	4.02247316815584	3.85646908373585	4.05957844033512	3.91933064565335	3.98532626427988	-0.697926884296966	0.128242010872884	0.398486842097221
Merged-chr19-46486881-4	chr19	46486790	46486990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_015752, exon 12 of 12)	3' UTR (NM_015752, exon 12 of 12)	-14758.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	6.30440174871994	5.86804412675036	5.97309145035462	6.04872991825321	6.17243815721142	5.93166380424374	5.96471229705766	6.07596884110342	-0.0127672205629306	0.958405587342692	0.985173677543006
Merged-chr1-86228940-4	chr1	86228862	86229062	+	989.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	74182.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	5.41968203977357	5.09043723128571	5.66196140894892	5.57097856995283	4.95040553016568	5.04071579153753	4.99166425022216	4.9370945932771	-0.892204152112296	0.0044082625827137	0.0432552870096979
Merged-chr12-51705755-4	chr12	51705651	51705851	+	692.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-13837.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	3.1851740281259	3.66019141396822	3.72199076232758	3.60978956553952	3.77968493834744	3.50335220915101	3.65696097943563	3.76764504637199	0.377427567083586	0.460629625184243	0.742687499720882
Merged-chr11-89092902-4	chr11	89092793	89092993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033266, exon 4 of 4)	3' UTR (NM_001033266, exon 4 of 4)	19052.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	6.9275460592616	6.81209879005009	7.03170134885333	6.96003803644142	6.25754061454005	6.02691850380157	5.99516923148071	6.1378782663507	-1.1956222928794	4.00621271805699e-08	1.88472052252861e-06
Merged-chr12-85345712-4	chr12	85345609	85345809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-6347.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	6.73032269774418	6.7817758173608	6.73150802443295	6.69986618321325	6.26893416285324	6.29038897803432	6.45166090870361	6.46304436116122	-0.535267796946907	0.00979158150872682	0.0777128413385305
Merged-chr6-116172655-4	chr6	116172538	116172738	+	848.287476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 1 of 5)	L1VL4|LINE|L1	20736.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	4.42732000993513	4.15886918689211	4.53701681195262	3.49685822273603	4.48072434203727	3.73394827689922	4.1118013405562	4.21982666366965	-0.117781359623578	0.822809152112294	0.932185203682946
Merged-chr9-35421456-4	chr9	35421363	35421563	+	980.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-30613.0	NM_021339	57810.0	Mm.80509	NM_021339	ENSMUSG00000038119	Cdon	CDO|Cd0|Orcam	cell adhesion molecule-related/down-regulated by oncogenes	protein-coding	6.00660334201631	6.19153068167704	5.94707606134923	6.51760964340533	5.20488251505202	4.97960310091979	5.22173087218656	5.09369876294353	-1.81282391779913	8.75944747119131e-10	5.6680791959266e-08
Merged-chr14-30609502-4	chr14	30609410	30609610	+	813.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 2 of 17)	intron (NM_011103, intron 2 of 17)	800.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	4.1228130257283	3.94862557784416	3.6674635161293	3.70415513397865	3.76991712644677	4.24913612765584	4.01713581049977	3.93784947432919	0.365582863320041	0.425745369933481	0.717175323137817
Merged-chr14-50939160-4	chr14	50939067	50939267	+	969.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12B|LTR|ERVK	-5136.0	NM_013632	18950.0	Mm.17932	NM_013632	ENSMUSG00000115338	Pnp	AL024301|AU015798|Np|Np-1|Np-2|Pnp1	purine-nucleoside phosphorylase	protein-coding	5.38615376033536	5.21019163033062	4.81371839211216	5.16220048119123	5.32384014810905	5.323037802443	5.41271499999493	4.93195395967381	0.190088499834938	0.550544334264985	0.798665130029057
Merged-chr11-90418158-3	chr11	90418057	90418257	+	714.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-27240.0	NM_172563	217082.0	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	3.21699002285272	3.00450780729054	3.27075804939516	3.29406308861594	3.24981060385557	3.08401900107681	3.03193359812947	2.97652799268108	-0.430462522947497	0.455855105741774	0.739247569027891
Merged-chr4-87683045-4	chr4	87682932	87683132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	123291.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	6.94857170979466	6.7967733360862	7.41764713939645	7.30539695938318	6.92014067093429	6.75583736269591	6.65897630006292	6.83724135413043	-0.480263433019949	0.0320120102339883	0.1748049770959
Merged-chr6-54934066-4	chr6	54933972	54934172	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 8 of 11)	intron (NM_001171007, intron 8 of 11)	37589.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	5.49833337216356	5.2954484251562	5.41167541554341	5.67112728209341	5.73722295636435	5.6746272482504	6.0097971058764	5.17713568056041	0.336120113935597	0.27307929253442	0.584534055974123
Merged-chr9-46028167-4	chr9	46028070	46028270	+	792.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	15350.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	4.69947078674782	4.49389245800067	4.45586374912518	4.75777226473779	4.33231509622179	4.49334422884836	5.05481427946338	4.58089539963676	0.05265750816408	0.892309131302983	0.959638462748584
Merged-chr1-43474725-4	chr1	43474622	43474822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	28971.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	7.14540345670224	6.81334634680136	6.98129622958199	6.87017471330615	7.1647513978755	7.24301707053047	7.00735113363451	6.57897843683297	0.10101458146915	0.649025096185537	0.852515405735303
Merged-chr7-101093388-4	chr7	101093271	101093471	+	965.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15404.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	4.73079310940204	4.9044621784798	4.64842983795079	4.85847138641472	4.84023568086842	5.25137088264046	4.92884768458326	4.84378252882815	0.345544605393235	0.299677089352593	0.611914155398268
Merged-chr15-59046947-3	chr15	59046832	59047032	+	692.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	35094.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	3.3803639360968	3.15966817238014	3.43494189332157	3.3990536270461	3.43077050508534	3.31446593538847	3.19274682848721	3.53458528926728	0.0967861128972947	0.854687488868795	0.94527177305373
Merged-chr2-11708630-4	chr2	11708545	11708745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271499, intron 1 of 6)	intron (NM_001271499, intron 1 of 6)	2933.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	7.37069188050025	7.53059108889647	7.72504049616603	7.76104268718084	7.36228474465874	7.22636773441926	7.48848187409084	7.43629556335113	-0.308236074552743	0.0987534246231299	0.344466199164409
Merged-chr9-37094312-3	chr9	37094226	37094426	+	923.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 1 of 12)	intron (NM_001029838, intron 1 of 12)	52996.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	4.47184952191274	4.25695423581272	4.43932027742545	4.47149375824117	3.23331293350069	3.45859175825295	3.24755926039106	3.33405493571176	-4.00991021701023	1.08627305905496e-09	6.95322212863964e-08
Merged-chr4-89524820-4	chr4	89524719	89524919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163379.0	NM_175647	242523.0	Mm.130167	NM_175647	ENSMUSG00000043753	Dmrta1	Dmrt4	doublesex and mab-3 related transcription factor like family A1	protein-coding	6.02358020969312	6.29555335337453	5.88994790418049	6.41958853118377	5.83175133125811	5.94319428879008	5.8833047398747	5.76156382790482	-0.532845269178516	0.0379408560077431	0.194890589014045
Merged-chr1-171412256-4	chr1	171412159	171412359	+	933.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009480, intron 1 of 9)	intron (NM_009480, intron 1 of 9)	578.0	NM_009480	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	4.12158817043343	3.95301077958102	4.24478374043354	3.97495513643487	3.99702082843036	3.77537151460324	4.06025107592179	3.82914214433566	-0.399508663501506	0.359363857144857	0.665266442591906
Merged-chr10-39240039-3	chr10	39239932	39240132	+	775.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76238.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	3.66217541297193	3.68073118353605	3.19743918973096	3.60399837606072	3.4617294152986	3.56523216390891	3.49347916589573	3.55906730327141	-0.118032312571764	0.817527873105991	0.929907417738328
Merged-chr14-30626412-5	chr14	30626284	30626484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011103)	promoter-TSS (NM_011103)	-176.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	6.94676585386462	7.488230085359	7.22324535059605	6.36012750536255	6.77597453804905	7.37882310019666	6.52702897362138	6.53842714534299	-0.294781003594245	0.33466093806859	0.645157506515558
Merged-chr2-75791973-3	chr2	75791812	75792012	+	883.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40265.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	3.06432939482202	2.78954991215653	3.29174617137946	2.97941260964179	2.99939298805618	3.17638193594042	3.05367541571725	3.38950758559148	0.481732048152441	0.420208995269908	0.713162823854942
Merged-chr3-105721991-4	chr3	105721909	105722109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16551.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	7.28400296659974	7.58214540126076	7.51790994834011	7.78089215165259	7.3571541700857	7.50652783770365	7.78197291153416	7.70878914737154	0.040718154778735	0.838814636150346	0.938853173799904
Merged-chr4-109120926-4	chr4	109120827	109121027	+	960.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	L1MC1|LINE|L1	-2891.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	4.46997725957682	4.59465849546352	4.80578035568266	4.81609757095514	4.88969324006447	4.82476189066452	4.78290619863067	5.20829492145617	0.502518199522865	0.147356187874436	0.428353593756206
Merged-chr2-154549764-4	chr2	154549667	154549867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029305, exon 3 of 3)	exon (NM_029305, exon 3 of 3)	863.0	NM_029305	75480.0	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding	5.87102851005799	6.38325968813533	5.96995891413997	6.01422090882073	6.33083751825559	6.34214001178649	6.52762888308587	6.31358323086716	0.460430600710496	0.0547407421519268	0.244349133678163
Merged-chr2-120661953-4	chr2	120661848	120662048	+	946.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	52353.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	4.6218814643893	4.87954342007418	4.62260396649109	4.84066806600306	5.027683246359	4.91906756549436	4.68387530778078	5.02065077386966	0.338753337773461	0.31303072885599	0.624928878926362
Merged-chr1-166171403-4	chr1	166171319	166171519	+	851.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41198.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	4.41768552596129	4.79573722373727	4.23869597890318	4.46133545975792	4.3184134990247	4.21108682291746	4.39830622352057	4.32899216440526	-0.423135189423659	0.279082980455924	0.591303690009592
Merged-chr6-37870654-4	chr6	37870552	37870752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001272064)	promoter-TSS (NM_001272064)	-159.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	8.91103675751983	8.83001016417561	9.06023871906335	9.22940665702362	9.15767240769495	9.15746212070104	9.34411683105289	8.88367752380474	0.155255616465997	0.361836945832786	0.667116113609588
Merged-chr2-127832724-4	chr2	127832621	127832821	+	764.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113179)	promoter-TSS (NM_001113179)	-862.0	NM_009772	12235.0	Mm.2185	NM_009772	ENSMUSG00000027379	Bub1	AL022991|Bub1a|C80208|D2Xrf87	BUB1, mitotic checkpoint serine/threonine kinase	protein-coding	4.1919675368789	4.50472697761509	3.74948264236861	4.07442137459218	4.18887105648155	4.31994154031488	4.30690686144341	4.62427920813875	0.505641038267967	0.248007324623282	0.559137354284593
Merged-chr1-156439809-2	chr1	156439709	156439909	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 8 of 15)	intron (NM_009230, intron 8 of 15)	-18894.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	2.52281144234945	2.43744122417883	2.63959241302186	2.56307794578055	2.30933581723238	2.27424020477508	2.31943113332584	2.32479457066093	-1.44442768443874	0.054721799306812	0.244310684708466
Merged-chr15-87077986-4	chr15	87077872	87078072	+	840.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-466327.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	3.11175926563424	3.11246777864256	3.38827588594057	2.99233852530525	2.9717718482837	3.15986255128113	3.27133869105072	3.22803370884983	0.0299525913257186	0.958186348879565	0.985110633982061
Merged-chr18-83817614-4	chr18	83817497	83817697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	268965.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	5.7581444196704	5.86056787572042	6.29475590842332	5.72087400731313	6.23975310137272	5.91029930078081	5.82808013467961	5.78046586294685	0.0724787560853585	0.794318437304801	0.920482425946606
Merged-chr19-11513701-4	chr19	11513605	11513805	+	965.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4854.0	NM_027209	69774.0	Mm.436639	NM_027209	ENSMUSG00000024677	Ms4a6b	1810027D10Rik	membrane-spanning 4-domains, subfamily A, member 6B	protein-coding	5.21186266794144	5.233714348526	5.18128735005588	5.15157926909965	5.43782356824186	4.99501051645591	5.27631757681709	5.07851889907098	0.0570210685449891	0.850410496166462	0.943605803779211
Merged-chr10-18210874-2	chr10	18210762	18210962	+	644.875	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_001195036)	promoter-TSS (NM_001195036)	28.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	3.31405511595205	3.23702154309725	3.20396301029331	3.29380257727081	3.1093892429215	2.90800137815711	3.30110742696062	3.20230344184115	-0.484660147874779	0.38975148855557	0.690041185689413
Merged-chr6-87914648-3	chr6	87914532	87914732	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_173737, exon 2 of 7)	exon (NM_173737, exon 2 of 7)	656.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	4.82179779472328	4.63234972374262	4.31005845972204	4.42112855748858	4.12556476099622	4.53421655425068	4.5508919809216	4.75281971606073	-0.119263752337849	0.765424005602044	0.908232038520811
Merged-chr1-37029375-4	chr1	37029317	37029517	+	849.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-89890.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	3.49130561823921	3.57240602327401	3.60807642639478	3.39485148991192	3.82057363311725	3.83450265593188	3.93016032777742	3.7127688170859	0.981106199366597	0.0332713271925343	0.179220508418147
Merged-chr11-97148887-2	chr11	97148787	97148987	+	944.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_198100, intron 2 of 8)	intron (NM_198100, intron 2 of 8)	825.0	NM_198100	73174.0	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	3.78382111675519	3.31825295013618	3.32532926230094	3.33068207477467	3.37111418811816	3.43982225829878	3.25159807578189	3.69353801329487	-0.0036500751749276	0.99460088043882	0.998093408906001
Merged-chr7-127119286-4	chr7	127119177	127119377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133686, intron 1 of 3)	intron (NM_133686, intron 1 of 3)	2752.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	6.49339780884568	6.04029266861314	5.98858587768859	6.3935583905446	6.63237379649962	6.49892093523802	6.47713285116555	6.16240758532391	0.305132880068368	0.219116492221806	0.526588317909918
Merged-chr4-129678065-3	chr4	129677948	129678148	+	780.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356378, intron 9 of 9)	intron (NM_001356378, intron 9 of 9)	-5281.0	NM_008468	16650.0	Mm.202358	NM_008468	ENSMUSG00000003731	Kpna6	IPOA7|Kpna5|NPI-2	karyopherin (importin) alpha 6	protein-coding	3.39919266168009	3.41679200423935	3.53839060357994	3.41584409886878	2.61610971853305	2.81834394245796	2.78032331330494	2.78654054744955	-3.8341436997913	6.63293281462636e-06	0.000190834892810141
Merged-chr17-84958562-4	chr17	84958438	84958638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027930)	promoter-TSS (NR_027930)	537.0	NM_001159496	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	5.05033901390894	5.13409185975289	5.92968427335924	5.71115276088653	5.91889551645445	6.08222242319682	5.85631394674864	6.00730531534644	0.733639504621415	0.0200658394214685	0.128325820681106
Merged-chr10-120209596-6	chr10	120209531	120209731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026617, intron 1 of 6)	L1MB2|LINE|L1	805.0	NM_026617	68212.0	Mm.157426	NM_026617	ENSMUSG00000020225	Tmbim4	0610007H07Rik|AU022431	transmembrane BAX inhibitor motif containing 4	protein-coding	5.31088963792823	4.95855599000227	4.55158193573618	4.87031406547259	5.45209829034948	5.07192802274031	5.04739053823517	5.06876697420305	0.450226910012489	0.193032611285601	0.493162602528256
Merged-chr13-115163117-4	chr13	115163001	115163201	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61137.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	4.6214009545986	4.7559878988408	5.01306914793349	5.04733008811968	4.66743735785332	4.79687115638243	4.51591298435884	4.57695095615651	-0.503847221978709	0.151772639365241	0.435518028517576
Merged-chr11-59506664-1	chr11	59506564	59506764	+	1000.0	f0_balb.idr	promoter-TSS (NM_001130529)	promoter-TSS (NM_001130529)	-24.0	NM_172941	268417.0	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	4.46690540863609	4.71942980311636	3.99338983392716	4.11096831576744	4.24162977504436	4.47193890501543	4.18595622675882	4.54159351704503	0.0351672399996682	0.934585125931046	0.976356212091203
Merged-chr7-111383876-4	chr7	111383780	111383980	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-261205.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	5.40616697652795	5.80318262594941	4.94593807018054	5.56732378459742	6.11437263829443	6.06459904414849	6.20572093207967	6.07154576127135	1.0264158208858	0.000413984932503867	0.00661288902843194
Merged-chr17-24455389-4	chr17	24455336	24455536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007893)	promoter-TSS (NM_007893)	-44.0	NR_125990	13560.0	Mm.163132	NM_007893	ENSMUSG00000024137	E4f1	p120E4F|phi-AP3	E4F transcription factor 1	protein-coding	7.76983622668664	7.97037241912986	7.72279300680152	7.53360923804157	7.92775227094983	8.1522771713675	7.69334095818671	7.87185016962211	0.218341636652474	0.247022029046523	0.558168726560377
Merged-chr14-30613554-4	chr14	30613449	30613649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	-3239.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	6.13869447937421	6.54339162086054	6.31799551974939	5.94160599051032	5.65781477196549	5.77290466872254	5.94441032037019	5.59458200977416	-0.804978304716154	0.00308118915259435	0.032641161287768
Merged-chr3-88476620-4	chr3	88476501	88476701	+	808.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15419.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	3.8460023995323	3.60444513480386	3.5117078636025	3.7074674946444	3.71449682211508	4.10968122271308	3.96820292780583	3.84427192847726	0.683953544594481	0.139326057226701	0.415045175664995
Merged-chr16-18235615-3	chr16	18235501	18235701	+	846.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172151)	promoter-TSS (NM_172151)	-465.0	NM_172151	27801.0	Mm.326263	NM_172151	ENSMUSG00000060166	Zdhhc8	D16H22S1738E|DHHC-8|E330009O14Rik|Op53c05|ZDHHCL1	zinc finger, DHHC domain containing 8	protein-coding	3.31296185692198	3.1973080997088	3.71708253824636	3.0680209091037	3.17144849272744	3.48754471980672	3.35799189710352	3.42491649829773	0.0846572087124843	0.881104340660334	0.955322489265647
Merged-chr12-24651232-4	chr12	24651133	24651333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178357)	promoter-TSS (NM_178357)	-138.0	NM_178357	194655.0	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	9.06114565077866	9.26208569044953	9.40033985637131	9.03109928176401	9.26575177365413	9.27126236158278	9.40896399630304	9.08773510864968	0.0849595399915345	0.593549627724805	0.822876522679178
Merged-chr5-21091429-4	chr5	21091343	21091543	+	822.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35532.0	NM_011203	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	4.0393738235778	4.38081048639949	4.18865479180796	4.04294221944728	4.1373122388819	4.26688703905477	4.53062975275052	4.3192700645683	0.373840916781796	0.354385012915068	0.661094606846962
Merged-chr7-48750581-4	chr7	48750473	48750673	+	961.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38430.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	5.04868595537976	5.2570583878269	5.5898425647054	5.484421471738	5.50513328359999	5.03093613965569	5.56145790956221	5.34449785710114	0.0273588771476285	0.930045034449641	0.974727857709636
Merged-chr16-56037790-4	chr16	56037690	56037890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029092)	promoter-TSS (NM_029092)	-16.0	NM_029092	52575.0	Mm.288742	NM_029092	ENSMUSG00000044763	Trmt10c	1300018J16Rik|D16Ertd454e|Rg9mtd1|Rnmtd1	tRNA methyltransferase 10C	protein-coding	7.85161284445242	8.03069703938947	7.57849357953152	7.8598706699683	7.831248680256	7.8714276382102	8.09407990454497	7.94799110992501	0.122527444657196	0.489795194992563	0.761966459176932
Merged-chr16-44725078-4	chr16	44724960	44725160	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145972, intron 1 of 8)	intron (NM_145972, intron 1 of 8)	759.0	NM_145972	212547.0	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	3.43284679148098	3.82902250667897	3.84757847608392	3.9021570667322	3.91765920220335	4.15983146028562	3.97399172746696	3.84534921793303	0.561799345471696	0.228637312153911	0.537456249729301
Merged-chr1-128044419-4	chr1	128044366	128044566	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 3 of 20)	intron (NM_001285945, intron 3 of 20)	58005.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	4.18411522584706	4.45323235988572	4.23237171725054	4.36307539748173	3.92862484752834	4.45110980982803	4.53861110637996	4.31997200463527	0.00683918433622461	0.986798817664032	0.995201805697358
Merged-chr13-30628844-4	chr13	30628754	30628954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	13811.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	6.54647438553396	6.41937235873273	6.8035253288478	6.41729554742474	6.37647384557208	6.23016067670319	6.44970197469211	6.31909614497306	-0.290281625760208	0.195723929538552	0.496593483304506
Merged-chr15-64189453-4	chr15	64189355	64189555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	123218.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	5.87888320612748	6.11472934773335	5.78324315072887	6.06181810862663	5.94283658772356	6.12240358886773	5.72879945103983	5.72797166712449	-0.136198872703436	0.594560805093888	0.823463186538592
Merged-chr3-108571654-4	chr3	108571623	108571823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025444)	promoter-TSS (NM_025444)	24.0	NM_025444	99730.0	Mm.24431	NM_025444	ENSMUSG00000048100	Taf13	1810004N01Rik|2010309N11Rik|AI847295|TAFII18	TATA-box binding protein associated factor 13	protein-coding	7.68946020175573	7.84051571842381	7.32125279873484	7.32332435926402	7.64152008113553	7.60169265524212	7.40713593947323	7.45815655696788	-0.0341093443869271	0.865825088614239	0.949727926552738
Merged-chr16-85285607-3	chr16	85285502	85285702	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111895.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	4.11115445118159	4.22815700779689	4.24618607205205	3.66968964064916	6.03153061304181	5.58100956924496	6.61001637274159	6.41566291690234	4.19164503355752	1.61506526337601e-28	1.57477712851837e-25
Merged-chr9-85327820-4	chr9	85327721	85327921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160378)	promoter-TSS (NM_001160378)	-671.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	7.14068792589828	7.51613027932605	7.52226825128116	7.22476235227978	7.65015398445591	7.69943698166266	7.73906014158815	7.5879022835263	0.415019101593036	0.0238999407611146	0.144057403966075
Merged-chr18-5819106-4	chr18	5819020	5819220	+	963.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	226473.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	5.03320666991866	4.71344662183199	5.00146743186973	4.63083806854655	5.31764813654323	4.8824569035278	4.72430848140937	4.93030575447538	0.30901320340839	0.38147429696019	0.683712519094761
Merged-chr1-184616127-4	chr1	184616031	184616231	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58440.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	5.28401956467623	5.82465379290677	5.25336737928814	5.75248561876012	4.95008400457222	5.02715494184501	5.37674765962335	5.31202566285495	-0.708204050989997	0.0284107080375762	0.161624503469201
Merged-chr11-119491432-4	chr11	119491343	119491543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153849)	promoter-TSS (NR_153849)	96.0	NM_001164636	338371.0	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	6.41947701037726	6.90138716263131	6.77881146694143	6.49815009432387	6.46917709049865	6.76509003810834	6.13027459849466	6.59997595290575	-0.220920624565426	0.365582666380262	0.670295715323899
Merged-chr15-63500575-4	chr15	63500470	63500670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20962.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	6.99971510099588	6.4641782455214	7.63527732890982	7.63954177471517	6.57764318286301	6.36231677807403	6.86296118088219	6.7666303513615	-0.862799921695073	0.00332462100226957	0.0346070778474036
Merged-chr7-74555628-3	chr7	74555553	74555753	+	907.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023908)	promoter-TSS (NM_023908)	-873.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	2.96186042596387	2.94330859049067	2.96216020034638	2.90273705521529	3.59559014118893	3.27950645957624	3.61666222152012	3.54168533713678	2.19367947326882	7.41993326497593e-05	0.00157654755184395
Merged-chr9-7873025-4	chr9	7872918	7873118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007464, exon 1 of 9)	5' UTR (NM_007464, exon 1 of 9)	152.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	9.0132434340946	9.32753644298032	8.96780384662154	8.63036758499213	9.2569054017687	9.26156217372468	9.31785823912454	8.91740338752312	0.238537738011072	0.208919977381401	0.513261142098876
Merged-chr19-61228474-4	chr19	61228380	61228580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009970)	promoter-TSS (NM_009970)	-62.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	7.31727397436338	7.32256477671844	7.32868546948151	7.26809760455153	7.29535314651521	7.26104207334421	7.30221977612833	6.89379450557369	-0.14159439644198	0.45331294662092	0.737415719616292
Merged-chr19-55767792-4	chr19	55767687	55767887	+	779.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	(TC)n|Simple_repeat|Simple_repeat	25977.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.80486546969773	3.9180059443906	3.75078771443773	3.51789098781369	3.92787057010644	4.12786155867948	3.73595104815583	4.24966287613955	0.779952842641409	0.0907815572635523	0.329176793910463
Merged-chr7-116093238-4	chr7	116093140	116093340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019772)	promoter-TSS (NM_019772)	-91.0	NR_029433	69350.0	Mm.440425	NR_029433	ENSMUSG00000087621	1700003G18Rik	2610312K03Rik	RIKEN cDNA 1700003G18 gene	ncRNA	8.62442048496318	8.77632278550285	8.58869496147388	8.78718514915771	8.70644552017228	8.6631398933586	8.81124330205213	8.71701181997693	0.0298333412999873	0.838590195525513	0.9387708599746
Merged-chr2-130291658-4	chr2	130291543	130291743	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4296.0	NM_001110513	228598.0	Mm.32582	NM_152993	ENSMUSG00000053552	Ebf4	Ebf3|O/E-4|Olf-1	early B cell factor 4	protein-coding	5.21566932508934	5.29730634947446	5.15436978459408	5.06865803138323	5.04687696828134	5.22911359973845	5.03067460223002	5.08550494438938	-0.15662085398395	0.601386702272734	0.82708957558551
Merged-chr3-116860552-4	chr3	116860452	116860652	+	875.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113478, intron 1 of 16)	intron (NM_001113478, intron 1 of 16)	985.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	3.93953752087979	4.02972970287123	4.24520060738628	4.12284557724506	4.82601211155579	4.3262137249977	4.18066732969936	4.37170513009846	0.897788369560872	0.0313819503396337	0.172525119006864
Merged-chr8-22593889-4	chr8	22593803	22594003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198998)	promoter-TSS (NM_001198998)	-90.0	NM_011696	22335.0	Mm.227704	NM_011696	ENSMUSG00000008892	Vdac3	-	voltage-dependent anion channel 3	protein-coding	8.2011625422918	8.67245691210843	8.25730929513547	8.36653380337151	8.63988119639725	8.78169901465375	8.78258194211623	8.25189516984771	0.304387142177006	0.110597459700194	0.367311337439347
Merged-chr8-119811903-5	chr8	119811725	119811925	+	913.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 3 of 3)	intron (NM_028071, intron 3 of 3)	28754.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	4.34194038774458	3.99146265167931	4.38581118102997	4.06395758126223	4.49605737065836	4.38034567779474	4.23296164089188	4.83988681848887	0.738490777147433	0.06901903208266	0.280790219742322
Merged-chr10-13300395-4	chr10	13300291	13300491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	23898.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	7.12238437567423	7.22787286100448	7.06453929665451	7.04775861205366	6.99643954012371	6.98834809231495	7.33715145312217	6.95888771817041	-0.0502463294727079	0.797095704354175	0.921510421482009
Merged-chr3-88686266-1	chr3	88686166	88686366	+	573.0	f0_c57.idr	intron (NR_151827, intron 1 of 13)	CpG	479.0	NR_151827	74200.0	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	4.28907204928369	4.18252375597861	3.77484707490911	4.13759694534815	4.13151399500115	4.18287271122685	4.04013009384653	4.74443149861691	0.475509229977407	0.289371257527576	0.601359281175888
Merged-chr4-148170976-3	chr4	148170863	148171063	+	854.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10295.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	3.4532180806826	3.22636998442713	3.18049311238662	3.19041379854832	3.14180598946104	3.29184712597072	3.16926360086793	3.29504039777158	-0.147312401204637	0.78515987744435	0.916424075220537
Merged-chr18-75171443-4	chr18	75171342	75171542	+	939.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 13 of 16)	intron (NM_027727, intron 13 of 16)	125875.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	5.207409015868	5.10142228670949	5.71312360443852	5.96030181703663	4.55605940071019	4.44686121192018	4.86986118214899	5.10805201601431	-1.48937694858728	0.000113308307914956	0.00225347081561293
Merged-chr15-103514825-2	chr15	103514725	103514925	+	867.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285890)	promoter-TSS (NM_001285890)	-152.0	NM_001285890	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	2.75800033920186	2.54845695380984	2.70005260665805	2.33462963234485	2.45235183899399	2.61291161585058	2.56588900042596	2.5062510397255	-0.285620639965843	0.685256343738603	0.871277576559787
Merged-chr4-8913326-4	chr4	8913207	8913407	+	965.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161983.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	5.0819367552105	4.65119774084213	5.14868306639912	4.93380299756509	5.4692981038175	5.0794839130655	5.43216092374107	5.23786371839807	0.677299286113976	0.0323511591586837	0.176116493901028
Merged-chr1-72942554-1	chr1	72942454	72942654	+	910.5	f0_balb.idr	Intergenic	RMER19B|LTR|ERVK	-67689.0	NM_010518	16011.0	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	3.38105812573161	3.18967013892086	3.01878053217837	3.32686830240533	2.47007727879604	2.70818440646774	2.94662294612318	2.59976170107355	-2.87587038817554	0.00032815817442461	0.00546129780158273
Merged-chr4-6222868-1	chr4	6222768	6222968	+	656.0	f1_c57bl6.idr	Intergenic	Intergenic	31763.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	2.39773316236928	2.19732690348726	2.23894954269431	2.13454619632307	3.02742741151842	2.65023513269491	2.82952515242176	2.66869471812799	3.53054110075125	7.73383759259678e-06	0.000219142844746595
Merged-chr17-34671685-4	chr17	34671556	34671756	+	831.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_031176, exon 2 of 33)	exon (NM_031176, exon 2 of 33)	1121.0	NM_031176	81877.0	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding	2.93617836587518	3.65464735624898	3.28363699868879	3.40606087028619	3.23552830927056	3.51642003076565	3.33103060766443	3.69725885349814	0.36442192851018	0.541711847318023	0.793401254763463
Merged-chr16-4757049-6	chr16	4756927	4757127	+	934.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357050)	promoter-TSS (NM_001357050)	81.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	4.09619613723825	4.25767548209715	4.45519853112342	3.66338336678956	4.14227345162178	4.80520090855931	4.22381695154885	4.37159536376325	0.643231637693419	0.163376102938293	0.452999401310613
Merged-chr14-50784556-4	chr14	50784457	50784657	+	828.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360545, intron 1 of 8)	intron (NM_001360545, intron 1 of 8)	963.0	NM_177625	219022.0	Mm.276362	NM_177625	ENSMUSG00000006288	Ttc5	-	tetratricopeptide repeat domain 5	protein-coding	3.97362574525323	3.99943565189308	4.02583743673428	4.33387973831854	3.94872994333011	3.98684460187538	4.59819123432916	4.21141601566417	0.264695449097074	0.557075724370757	0.802349109368396
Merged-chr19-41374777-4	chr19	41374677	41374877	+	980.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	10293.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	4.83167861560371	4.91743301396134	4.90417766041342	4.68825940266953	4.97800985452231	4.81072785688619	5.21214433616385	4.44649584000546	0.132193947246556	0.71083442939757	0.88422928383093
Merged-chr1-38898033-2	chr1	38897942	38898142	+	563.0	f0_balb.idr|f1_c57bl6.idr	5' UTR (NM_145142, exon 1 of 7)	5' UTR (NM_145142, exon 1 of 7)	118.0	NM_145142	98388.0	Mm.260054	NM_145142	ENSMUSG00000026080	Chst10	AI507003|AU041319|Hnk-1st|ST	carbohydrate sulfotransferase 10	protein-coding	2.81188764010603	2.60915670644111	2.70411250160945	2.77216019224878	2.38943942658859	2.3218691780856	2.51165488694462	2.45029710917393	-1.84243168280549	0.0143520921643313	0.10167886614561
Merged-chr2-71055692-4	chr2	71055594	71055794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145524)	promoter-TSS (NM_145524)	-50.0	NM_001165982	75763.0	Mm.281668	NM_198005	ENSMUSG00000041966	Dcaf17	2810055O12Rik|4833418A01Rik|A030004A10Rik|A930009G19Rik|AI448937	DDB1 and CUL4 associated factor 17	protein-coding	8.10316571831815	7.84408996799703	7.86118215840703	7.89683817948118	8.01205949369557	7.9296309135375	8.03489921907227	7.66267943783596	-0.00935738027296893	0.957154808901528	0.984757116793997
Merged-chr1-173419742-3	chr1	173419631	173419831	+	860.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013779)	promoter-TSS (NM_001013779)	-873.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	3.54902903584348	3.52491224890029	3.42895247720694	3.8213227777768	3.6101698811827	3.72295058063409	3.96615332237428	3.70962170482384	0.454906468215587	0.359360608571584	0.665266442591906
Merged-chr16-4920789-4	chr16	4920708	4920908	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 9 of 17)	intron (NM_001357062, intron 9 of 17)	-18303.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	5.13969707457208	5.30250611652252	5.14055944646279	5.26777789465478	5.47184175603507	5.06125463712737	5.18033893214201	5.40721563672768	0.147275472978666	0.620993691270234	0.837616640748534
Merged-chr9-104061461-1	chr9	104061361	104061561	+	719.0	f0_balb.idr	intron (NM_025692, intron 1 of 11)	intron (NM_025692, intron 1 of 11)	1660.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	3.11300762201418	3.18002366630532	3.1677609881112	3.19380779955351	2.83122225506886	2.83354398702162	2.79325204048507	2.93363774132834	-1.425525975466	0.0202841897643512	0.129238101158064
Merged-chr8-27128705-4	chr8	27128611	27128811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025686)	promoter-TSS (NM_025686)	-79.0	NM_025686	66653.0	Mm.334467	NM_025686	ENSMUSG00000031487	Brf2	2700059M06Rik|5730512K07Rik|AU018504|AU022602|BRFU|TFIIIB50	BRF2, RNA polymerase III transcription initiation factor 50kDa subunit	protein-coding	6.18111326580996	6.74276209151688	6.49579281403543	6.45784298816235	6.3234351492476	6.45855375001765	6.54154111008627	6.27778169641565	-0.127731009742448	0.581373665324966	0.816253350773532
Merged-chr13-51847420-3	chr13	51847320	51847520	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011817, exon 2 of 4)	exon (NM_011817, exon 2 of 4)	745.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	5.07876573821533	5.06262369085573	5.14849593952507	5.25142572449156	5.37915927575403	5.38803992569126	5.49512293916817	5.30233979252608	0.442853440268264	0.123212816412199	0.389179723070951
Merged-chr1-155054874-4	chr1	155054831	155055031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(G)n|Simple_repeat|Simple_repeat	28333.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	6.29504497750143	6.03062006338875	5.56568750619699	6.40469124232823	6.30317426534076	6.21515017223784	6.33316250786038	6.11925143589379	0.179813761491079	0.509396705814012	0.773990268606403
Merged-chr2-160210032-4	chr2	160209955	160210155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117439.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	6.73784911669023	6.75363799188236	6.82443593948601	6.71100872621063	6.81301458884098	6.83991021904554	6.95613559162082	6.79178026804618	0.137343477992175	0.476647211123268	0.753102593574764
Merged-chr18-34119193-4	chr18	34119093	34119293	+	919.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101791.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	4.79209590374774	4.29372475757528	4.64500925651768	4.66666383315567	4.63564936583121	4.65347617322035	4.62335043927773	4.85746967218103	0.175684014605927	0.623782702640893	0.839117589085407
Merged-chr11-116093867-4	chr11	116093764	116093964	+	973.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6869.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	5.31573688233525	5.96054571404057	4.89776583995395	5.3686606249688	5.74846639279453	5.80750410808791	5.77016953322778	5.60345272599859	0.484087371360593	0.139075424768174	0.414645625348659
Merged-chr17-56462414-6	chr17	56462325	56462525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252456)	promoter-TSS (NM_001252456)	-204.0	NM_001252456	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	6.54353130233287	6.41663536139987	6.37609087138912	6.49766634831239	6.44540931029609	6.29478065464584	6.23092849212873	6.68850005477455	-0.0486690062406321	0.827563537930231	0.933903677361406
Merged-chr4-40868939-4	chr4	40868843	40869043	+	925.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-14406.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	4.12100370506096	3.80950845834251	4.84035699098319	4.83809867624371	4.30673289122227	3.88444782178792	4.29981080151987	4.92494339113845	-0.141615591285767	0.859121769689527	0.946629595100632
Merged-chr2-31068978-4	chr2	31068886	31069086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	27514.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	5.36161349143819	5.39534864213765	5.24385641078581	5.18682524972736	5.06330524793328	5.47763378030517	5.2782355540622	5.07461500507044	-0.123873658911294	0.679349585468598	0.868405512347922
Merged-chr14-122534244-4	chr14	122534140	122534340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144844)	promoter-TSS (NM_144844)	-88.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	8.92475207162366	8.88723991802453	8.9224005259145	9.21596096550125	8.84574656844914	8.64519525237148	9.36735481252259	8.79945000569299	-0.0649206616420635	0.739485317045048	0.897318832266992
Merged-chr1-74712214-4	chr1	74712128	74712328	+	835.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1307.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	3.88313701036066	3.58878946666797	3.83136974262871	3.62514288828062	4.1526346194947	4.19931588230462	4.1803520167698	3.88142516725694	1.06665734247289	0.0144526382546889	0.102147188792622
Merged-chr16-10873864-4	chr16	10873782	10873982	+	889.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38823.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	4.23916901734441	4.34273199679806	4.32403973284565	4.18023505723028	4.00027998785663	4.01446492032089	3.98505664321777	4.32125311449796	-0.468330797676573	0.251822060086312	0.563042010833474
Merged-chr8-124959489-1	chr8	124959389	124959589	+	591.0	f0_balb.idr	Intergenic	Intergenic	-10235.0	NM_053207	112405.0	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	3.10642360242722	3.07813185610951	3.260879149507	2.93782022129592	2.50126368047895	2.8379180553889	2.85797598174099	2.79926259506546	-1.64964567684646	0.0159567102088315	0.109479978232368
Merged-chr11-59810382-2	chr11	59810282	59810482	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271356)	promoter-TSS (NM_001271356)	302.0	NR_045686	100504104.0	Mm.391737	NR_045686	ENSMUSG00000087249	Gm16062	-	predicted gene 16062	ncRNA	4.40289234162953	4.63795341527547	4.26738492995114	3.60106622263383	4.09807848052805	4.57901558523185	4.81322638780212	4.56238907828198	0.585016100677653	0.22123004227039	0.529344264446823
Merged-chr13-23534293-3	chr13	23534205	23534405	+	715.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175661)	TTS (NM_175661)	394.0	NM_175661	319173.0	Mm.377878	NM_175661	ENSMUSG00000061991	Hist1h2af	H2a-221	histone cluster 1, H2af	protein-coding	3.24016040715817	3.13042447829628	3.18149280915907	3.22699228098787	3.45582177037304	3.16360428047939	3.43792903238702	3.1181701001438	0.415262419312455	0.445021940541223	0.731198136541277
Merged-chr3-103020463-4	chr3	103020356	103020556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144901)	promoter-TSS (NM_144901)	-90.0	NM_001310693	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	8.72283722476299	9.0278358806091	8.8785470598733	8.71438619087677	8.92496916145364	9.04121728542978	8.90913489946218	8.69247008407285	0.0713207543187599	0.656345713301204	0.85658929556191
Merged-chr11-60931961-4	chr11	60931845	60932045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027800)	promoter-TSS (NR_027800)	-78.0	NR_027800	24082.0	Mm.46270	NM_025293	ENSMUSG00000042549	Map2k3os	F3-1|Gm16516|Gtlf3a	mitogen-activated protein kinase kinase 3, opposite strand	ncRNA	7.78420165948095	7.77968257152823	7.63842013309982	7.64288185526915	7.84972506772331	7.76257584974946	7.89948912964339	7.72504978378776	0.134700617147213	0.411494749255185	0.706942536257065
Merged-chr3-96730029-3	chr3	96729932	96730132	+	835.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026406, intron 1 of 8)	intron (NM_026406, intron 1 of 8)	2421.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	3.44221938673738	3.59611755994783	3.25626913366466	3.44494563016687	3.59467616467505	3.82287271503244	3.48578462300019	3.49748036324034	0.528739861898948	0.291238361348245	0.603554575525704
Merged-chr11-101645585-4	chr11	101645464	101645664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17615.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	5.46605772512642	5.93069633602499	5.57312131103747	5.48509360981211	5.29079205144675	5.29812554158595	5.16453759220504	5.1862758751652	-0.683260588616011	0.0199990414124894	0.128013648264351
Merged-chr9-118737348-3	chr9	118737257	118737457	+	882.711121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	25665.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.05112327143933	3.70324695427415	4.17804207319307	4.83733840040546	3.20604534310175	3.42162506743654	3.36371106142559	3.69631512631745	-2.61218456459683	1.31342318914526e-05	0.000352652392229992
Merged-chr13-112510573-3	chr13	112510466	112510666	+	865.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46496.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	3.72895887766952	3.72424338003419	4.13441848587357	3.75696226797217	3.64415540599999	3.54939308335208	3.76576495275554	3.82909386445369	-0.420290626657982	0.375711401682912	0.678595291948235
Merged-chr6-134035755-4	chr6	134035720	134035920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007961, exon 1 of 8)	5' UTR (NM_007961, exon 1 of 8)	120.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	6.50845973788692	6.44758151112634	6.63719351505411	6.65087972698798	6.56853704949727	6.71881006107598	6.73229541496018	6.3441914735089	0.0424974039019819	0.843602935802144	0.940656589135439
Merged-chr18-58660046-4	chr18	58659972	58660172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025478, intron 1 of 4)	intron (NM_025478, intron 1 of 4)	590.0	NM_025478	66307.0	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	5.6890220078537	6.02988473381832	6.091703524885	6.17925647992101	6.05539011343787	6.16147306754771	6.17580646317406	5.76666033433668	0.0410486989356472	0.873139358053033	0.952434161906071
Merged-chr11-121083108-4	chr11	121083002	121083202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1963.0	NM_145373	209588.0	Mm.69553	NM_145373	ENSMUSG00000025165	Sectm1a	BC010462	secreted and transmembrane 1A	protein-coding	5.350870802322	5.33100470881016	5.38097420158152	5.46316808408211	5.51999870021035	5.33735464794192	5.0662163120437	5.4335911056904	-0.0526864218861744	0.855450541286785	0.945640332561297
Merged-chr10-127522400-4	chr10	127522265	127522465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252316)	promoter-TSS (NM_001252316)	79.0	NM_001252316	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	4.36720574474441	4.55539872345334	4.32361867910136	4.40002867132109	4.88274354488064	4.40586299365713	4.11281469748425	4.01887065368789	0.00898830317090168	0.983633600984396	0.994100000074476
Merged-chr9-40757394-6	chr9	40757302	40757502	+	923.0972289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-43871.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.04027663147045	3.91787139089262	3.88821338294639	3.30699549422588	4.34525601045009	4.34863899173197	4.06961345926235	4.13093418391921	1.14544634635603	0.0166610911126835	0.113020089994253
Merged-chr5-86792920-3	chr5	86792816	86793016	+	952.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	-11350.0	NM_001347375	231386.0	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	3.58760404381054	3.69336103805584	3.53640587964177	3.66958990423359	3.3465429379271	3.28434022179462	3.46909135905325	3.36579535152222	-0.88901495816239	0.0789679232909695	0.304126058431334
Merged-chr12-73560260-2	chr12	73560160	73560360	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11777.0	NR_044985	73644.0	Mm.369885	NR_044985	ENSMUSG00000113800	2210039B01Rik	-	RIKEN cDNA 2210039B01 gene	ncRNA	2.73748945380997	2.47235258347655	2.53673091737411	2.48436253814461	2.79287281968634	2.78101336323925	2.78761814172781	2.85489703706206	1.23880076604984	0.0540649733112866	0.242763735511233
Merged-chr19-6487330-4	chr19	6487204	6487404	+	772.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 11 of 22)	intron (NM_001205234, intron 11 of 22)	55766.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	3.97091157037962	4.04770599730381	4.12598998223197	4.38987153650176	4.17207093021302	4.0952555489118	4.24494697388038	4.66731283160038	0.375441616749364	0.385748910237973	0.687186447137568
Merged-chr11-78032230-4	chr11	78032133	78032333	+	980.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183286)	promoter-TSS (NM_183286)	-80.0	NM_183286	70451.0	Mm.390342	NM_183286	ENSMUSG00000020834	Dhrs13	2610209N15Rik	dehydrogenase/reductase (SDR family) member 13	protein-coding	5.50456391341115	5.40032478988512	4.94967983846426	5.37837395916036	5.28170274540532	5.20173440328214	5.34702256653942	4.73776459665469	-0.294549183109491	0.370506881303494	0.674742466529394
Merged-chr16-37539792-4	chr16	37539691	37539891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028812)	promoter-TSS (NM_028812)	-2.0	NM_001355727	74197.0	Mm.287795	NM_028812	ENSMUSG00000022828	Gtf2e1	2610024P03Rik|56kDa|AI303800|FE|TFIIE-A	general transcription factor II E, polypeptide 1 (alpha subunit)	protein-coding	8.44016997731483	8.54806399179629	8.32358278087115	8.61788670939791	8.63440392570896	8.44926023205952	8.4719764294635	8.33488711191799	-0.0150199810131924	0.925519190259534	0.972503515835845
Merged-chr13-110626591-3	chr13	110626451	110626651	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	231507.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	3.9603431717984	4.0534927873113	3.86682391187318	3.76669147931647	3.61616588170579	3.77318423043869	3.69679699608013	3.8148087452276	-0.55308309977234	0.22596834422289	0.534554181708966
Merged-chr5-115513447-3	chr5	115513355	115513555	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	ID_B1|SINE|B4	6779.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	6.30043708826521	6.39684900519387	6.12582105154397	6.36485369367022	4.03100376231752	4.4055959372058	4.30489775979745	4.8559751997824	-3.74581638584991	4.17109999218834e-23	2.0761868975103e-20
Merged-chr16-38760920-4	chr16	38760777	38760977	+	934.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152434, intron 4 of 6)	intron (NR_152434, intron 4 of 6)	18618.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	4.32139388735996	4.01050942090648	4.54453837239697	4.5083136205564	4.87082670887514	4.86911424160375	4.39585631913483	4.79939226159715	0.83210274311393	0.0339415621512634	0.181785286107207
Merged-chr12-100936334-4	chr12	100936232	100936432	+	894.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026681, intron 20 of 29)	intron (NM_026681, intron 20 of 29)	-28134.0	NM_001177673	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	3.967019667807	4.36240276574218	4.42349696368831	4.36186115396687	3.87409311182503	4.09118429065319	4.24091600586837	4.34161981079146	-0.385094239617167	0.36462507952319	0.669391533461805
Merged-chr16-87479210-3	chr16	87479107	87479307	+	968.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024258, exon 14 of 18)	exon (NM_024258, exon 14 of 18)	16662.0	NM_009840	12469.0	Mm.328673	NM_009840	ENSMUSG00000025613	Cct8	AI132397|Cctq|Tcpq	chaperonin containing Tcp1, subunit 8 (theta)	protein-coding	3.75857376587774	3.36229987569161	4.07603835887704	4.05725639243544	3.35409217175459	3.71357548900637	3.79318558581235	3.75691925463933	-0.555912604840177	0.296396415781759	0.608478404731474
Merged-chr4-145252774-4	chr4	145252677	145252877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5907.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	6.29434839026147	6.87271660160532	6.66978448682902	6.02567754108993	6.49843580148993	6.39455156345359	6.26314434221806	5.89408959217995	-0.315699210013739	0.269827761093577	0.581596772155156
Merged-chr10-60289410-4	chr10	60289341	60289541	+	860.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	4980.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	3.47054238727751	3.82292446299273	3.88411211357457	4.4443944259609	4.0437121441222	3.89859935307462	3.70833189912102	4.06982883915334	-0.087064837699016	0.870005869722805	0.95118203952818
Merged-chr14-19975152-4	chr14	19975084	19975284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285908, intron 1 of 3)	intron (NM_001285908, intron 1 of 3)	1509.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	5.98870661715441	6.04436848691972	5.54940383038135	5.93862220723276	5.66893230609091	5.8375768691663	5.60592171698468	5.85516292421645	-0.257589895878418	0.327932912475049	0.639283008690489
Merged-chr2-170311166-4	chr2	170311074	170311274	+	951.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45187.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	4.94019399365022	4.81027555238978	4.97420551585992	5.21200751871085	4.57446536709602	4.58867739357059	4.69945845929304	5.03442065984842	-0.563100679861369	0.108204197387883	0.363055838873956
Merged-chr6-17584159-4	chr6	17584075	17584275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52835.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	5.48361147848736	5.3409077468691	6.08622702107009	5.73858403780063	5.78353967123556	5.98410819456152	6.14653554636213	5.8516069706796	0.407615008084736	0.155767471964543	0.441609163147605
Merged-chr3-106485202-4	chr3	106485118	106485318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028110)	promoter-TSS (NM_028110)	695.0	NR_033207	69206.0	Mm.14816	NM_001033146	ENSMUSG00000091575	2010016I18Rik	-	RIKEN cDNA 2010016I18 gene	ncRNA	5.84575560169045	6.06857985919445	6.08712917339419	6.13931216023074	6.00481842077212	5.81585744696098	5.79322398076263	5.88981765827829	-0.259097283131055	0.288361961248546	0.600376446715098
Merged-chr5-64231005-4	chr5	64230882	64231082	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	625.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.19457152942734	4.85104099547643	4.59498092054991	4.37683783455505	4.57524503653391	4.42388037880894	4.32356869342055	4.59195554737695	-0.0848597895988134	0.829014039231716	0.934333879868872
Merged-chr5-134184008-4	chr5	134183905	134184105	+	928.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053266)	promoter-TSS (NM_053266)	-33.0	NM_001359852	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	4.62926144781874	4.65011233494373	4.37763299985156	4.35330057394845	4.37623808287365	4.68328826475882	4.71674144600664	4.62696456810906	0.219763913520019	0.549752468564611	0.798147832027397
Merged-chr4-132247710-4	chr4	132247603	132247803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122992, intron 3 of 10)	intron (NM_001122992, intron 3 of 10)	13846.0	NM_020273	56809.0	Mm.103489	NM_020273	ENSMUSG00000028901	Gmeb1	1110050A04Rik|AI256615|AI481278	glucocorticoid modulatory element binding protein 1	protein-coding	6.72246700389212	6.66599727105285	7.3613650365292	7.30709253502487	6.44043865849276	6.65263603878948	6.79053616580585	6.8749771587029	-0.513651429372084	0.0408713104303567	0.204368036889523
Merged-chr10-62578490-4	chr10	62578367	62578567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028197)	promoter-TSS (NM_028197)	-10.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	7.88435333427279	7.73794527254548	7.38991120736429	7.77843955468793	7.88517872765411	8.09142739015753	7.8688957981807	7.80642795467736	0.262056728205462	0.151933350744805	0.435750824911937
Merged-chr8-61928136-4	chr8	61928043	61928243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293783)	promoter-TSS (NM_001293783)	56.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	5.96967151270679	5.95820773878802	5.54344301349436	5.80931423886566	5.98406032710552	6.03409470191235	5.94022224437995	5.70708317314632	0.148316321126304	0.563372460234908	0.806295257712239
Merged-chr10-128410712-2	chr10	128410612	128410812	+	955.599976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104288)	promoter-TSS (NR_104288)	-161.0	NM_001358972	69917.0	Mm.46614	NM_027257	ENSMUSG00000025374	Nabp2	2610036N15Rik|Obfc2b|SSB1	nucleic acid binding protein 2	protein-coding	3.32902304095744	3.15728056108377	3.38178821114687	3.03313004208146	3.38591600766826	3.07031900728456	3.08567087151296	3.27315349012953	-0.0217391120122501	0.969454367776532	0.989008244980025
Merged-chr5-21185776-2	chr5	21185676	21185876	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175437)	promoter-TSS (NM_175437)	-491.0	NR_153365	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	4.66004233766785	4.51846566922886	4.28554158626801	4.39774284589383	4.16078819785146	4.75705610797419	4.52626898110755	4.5044969027473	0.0561762541932817	0.885366818255708	0.956984644600969
Merged-chr15-83122812-4	chr15	83122705	83122905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029101)	promoter-TSS (NM_029101)	-4.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	6.52183635927199	6.62967810394121	6.05824426539028	6.20296911235342	6.48494026585784	6.76153644390631	6.64125175814783	6.4346415833581	0.314782751832761	0.187685458564486	0.48610501726011
Merged-chr5-135707981-4	chr5	135707885	135708085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	18840.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	7.25348160887502	7.0614223585998	7.24421522088271	7.38282850674974	6.76047277078214	6.95391967797576	7.25952656673489	7.11723929051678	-0.296868242734542	0.149367011245258	0.431576920047058
Merged-chr8-36995459-4	chr8	36995394	36995594	+	965.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001039220)	TTS (NM_001039220)	1919.0	NM_001039220	621080.0	Mm.373292	NM_001039220	ENSMUSG00000074384	AI429214	-	expressed sequence AI429214	protein-coding	4.14460611141757	4.25167415571182	4.78093146574155	4.89753705644907	4.30129810518646	4.09799757077045	4.94127504823507	4.59877384759267	-0.0964561145798202	0.833786847642086	0.936548060223706
Merged-chr7-128065784-4	chr7	128065675	128065875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008401, intron 2 of 29)	Lx8b|LINE|L1	3135.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	6.09875344076277	5.79110052478747	5.46551629949533	6.25662549495073	5.8701456493327	6.05864776518807	6.31950427899271	6.03411116484112	0.190463461591933	0.508621668502414	0.773588789126549
Merged-chr10-40108130-4	chr10	40108010	40108210	+	940.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	34144.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	4.05944292977089	4.77075458282147	4.29915855746009	4.17201052909252	4.47400684978643	4.23730962039459	4.09426580326826	4.05769643923355	-0.287483905794208	0.513723552525524	0.776626777135012
Merged-chr12-100505631-4	chr12	100505523	100505723	+	943.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 1 of 19)	intron (NM_001033213, intron 1 of 19)	15199.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	5.61523441665091	5.16591665296111	5.153131978461	5.63019465927108	5.00387396226572	4.77212192667295	5.44378986836522	4.85553819912668	-0.686842147927691	0.0464158916827836	0.221392263893912
Merged-chr7-4556911-4	chr7	4556812	4557012	+	871.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207270, intron 12 of 19)	intron (NM_207270, intron 12 of 19)	-9371.0	NM_001360422	53420.0	Mm.358663	NM_016908	ENSMUSG00000004961	Syt5	SytV	synaptotagmin V	protein-coding	4.09234102047132	3.97437394575729	4.35696853202656	3.90488401648982	4.64485823551699	4.1680640162936	4.1685489367275	3.98912647666024	0.493395642742577	0.263556990243004	0.57561053691224
Merged-chr14-27341649-4	chr14	27341550	27341750	+	932.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	MIRb|SINE|MIR	5613.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	5.04252574821014	5.56560622009491	4.93324746538833	4.43216852816129	5.56018598318328	5.58088422690987	5.27112094651036	4.58231239820006	0.45854141586637	0.278195323881566	0.590343204506655
Merged-chr10-81241077-4	chr10	81240949	81241149	+	756.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034895, intron 4 of 17)	intron (NM_001034895, intron 4 of 17)	7886.0	NM_001034895	103406.0	Mm.158783	NM_001034895	ENSMUSG00000034949	Zfr2	2010013I23Rik|9130206N08Rik|AW045600|mKIAA1086	zinc finger RNA binding protein 2	protein-coding	4.01446725970529	3.94181335046873	4.19654272808739	3.82310761405673	4.30283953154054	4.18709154974038	3.89786970928475	3.96306273344104	0.309397529983841	0.475138543375663	0.75208784866875
Merged-chr15-84856203-4	chr15	84856118	84856318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081166)	promoter-TSS (NM_001081166)	-89.0	NR_030731	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	5.47242290073877	5.49030003277981	5.17591194325957	5.33694143200706	6.07727208371112	5.88916281258425	5.86624882620109	5.75871580041305	0.897631530883354	0.000687297461745002	0.00997576387225683
Merged-chr4-59806728-4	chr4	59806616	59806816	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	1066.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	5.64518754288116	5.17484188386351	5.19497156552283	5.25678502686568	5.2527358744967	5.12752021069564	4.8870553710052	5.25366119953346	-0.335613355798177	0.285281839485143	0.596975707459815
Merged-chr5-21676155-4	chr5	21676035	21676235	+	774.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359964, intron 2 of 4)	intron (NM_001359964, intron 2 of 4)	25261.0	NM_001359964	242864.0	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	3.97243960974388	3.54691847393393	3.88227880244248	3.68796129241988	3.83539787584222	3.79699850616723	3.66430525288293	3.78228331726887	-0.000690697995656365	0.998813177510943	0.999467870580851
Merged-chr4-102566628-4	chr4	102566516	102566716	+	966.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-3444.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	6.13649498458907	5.67659362824711	5.79947413447389	5.98905988218803	5.81866931928881	5.33670172072517	5.94929794028083	5.99645031082338	-0.177810047493718	0.527069959976862	0.784096064657872
Merged-chr5-115530107-4	chr5	115529926	115530126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	23350.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	5.9112359882779	6.03029103546948	6.5195524245129	6.1655341321575	5.90722959576256	6.0889708894132	6.05753585867605	5.83509616357659	-0.315191614810647	0.218527745988584	0.525794761576629
Merged-chr7-19935432-8	chr7	19935337	19935537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-14294.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	5.71653046176608	5.61119885443973	5.93366437029182	5.92635492630869	5.92006552030657	5.86787868801097	5.94651521437749	6.15114356659245	0.259592244516903	0.303850208589366	0.6165617765318
Merged-chr16-30943506-4	chr16	30943394	30943594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	137938.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	4.94831542930539	4.97372993706175	5.0544837542214	5.13228821608688	5.01637714392153	5.44131285972132	4.96129200622755	5.05105238699394	0.166138638607945	0.599781167857515	0.826560500894977
Merged-chr7-129574691-4	chr7	129574595	129574795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17168.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	7.08446209862249	6.95184936148717	7.53557425607219	7.60585521331924	7.14593982923118	7.07867274073575	7.3723960445099	7.2740514285502	-0.151795973638652	0.496891970447678	0.766791838796646
Merged-chr17-81703127-1	chr17	81703027	81703227	+	1000.0	f0_balb.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	35260.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	4.81422680696927	4.25496809951128	4.87816368544883	4.70917572109775	4.44170366790424	4.16268016950447	4.18473852587461	4.6007516845957	-0.718534082975901	0.0762785508379612	0.298263009064823
Merged-chr19-55743632-4	chr19	55743513	55743713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 3 of 15)	intron (NR_138565, intron 3 of 15)	1803.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	6.21783589522773	6.37014655048985	6.38372001520883	5.86180629132397	6.44975954737557	6.60880535022169	6.12730098241098	6.02506471292283	0.173914058084275	0.511034646973734	0.775132664017528
Merged-chr12-103388685-4	chr12	103388578	103388778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026580)	promoter-TSS (NM_026580)	-3.0	NM_026580	68149.0	Mm.127378	NM_026580	ENSMUSG00000021203	Otub2	2010015L18Rik|4930586I02Rik|AI413508|AW557219|OTB2|OTU2	OTU domain, ubiquitin aldehyde binding 2	protein-coding	7.20070011377569	6.89810456463663	7.45820516047495	7.48831396307571	6.9358052617901	6.96968280423356	7.27034714553893	6.83128964549023	-0.378949828851968	0.0878205596935526	0.32328194137502
Merged-chr2-26055241-4	chr2	26055110	26055310	+	893.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026495)	TTS (NM_026495)	-33450.0	NM_133835	98766.0	Mm.247824	NM_133835	ENSMUSG00000036352	Ubac1	1110033G07Rik|AA407978|GBDR1|Gdbr1|Kpc2|Ubadc1	ubiquitin associated domain containing 1	protein-coding	3.7115695293755	3.83931465306725	3.65649798969363	3.85778937929947	3.7885740401451	3.98625462106394	3.75053873228178	3.95729329937977	0.269298840224563	0.548186839580078	0.797241506537612
Merged-chr15-59622824-3	chr15	59622723	59622923	+	688.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25831.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	3.22645446379793	3.21376495910401	3.22686795653275	3.10402975558344	3.39284910668217	3.14961473978554	3.21491032724591	3.28162541763795	0.307046464740247	0.566189046586508	0.807835530970224
Merged-chr1-24700626-4	chr1	24700518	24700718	+	960.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026719, intron 3 of 15)	intron (NM_026719, intron 3 of 15)	21700.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	5.10409934085848	4.69359574090608	4.50677459853222	5.15012035388673	4.81651705908668	4.77642661922663	4.9876457741829	4.87351459127948	-0.08499072412334	0.812580210802012	0.927652305694976
Merged-chr2-48350421-4	chr2	48350330	48350530	+	894.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-463679.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	3.98919399832663	4.25123992309844	4.73886497752813	4.93067573765695	4.24030621348113	4.17440599044973	4.41867854641958	4.70185467749076	-0.325758977097278	0.477855086057811	0.753990094888362
Merged-chr18-82785370-4	chr18	82785273	82785473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-26334.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	6.27482256953373	6.06378432192656	5.95940134610617	6.15652989665886	6.46372753245853	6.16102272072548	6.46446983689585	6.49309232596674	0.43109283468986	0.0595240015782916	0.257144234797305
Merged-chr4-125059263-4	chr4	125059170	125059370	+	762.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175223, intron 4 of 5)	intron (NM_175223, intron 4 of 5)	6387.0	NM_175223	75563.0	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	3.67412196812425	3.77812643371558	3.39067672572365	3.40466097078652	3.93533443008219	3.56795840968433	3.70878508638123	3.45085765511631	0.374601183198463	0.461838926393607	0.743501704400988
Merged-chr12-91665731-3	chr12	91665659	91665859	+	941.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-75272.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	3.17790115998976	3.01249316962672	3.47724097573525	3.16877908614627	2.84768342602804	2.97025006588338	3.04978205007851	2.99628272921377	-1.0497189351389	0.0813802739990973	0.309492891547751
Merged-chr2-129196451-4	chr2	129196335	129196535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2338.0	NM_015747	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	7.08569926498774	7.28008104626074	7.3819151643002	6.72598682777603	7.16940955388144	7.19053864425149	6.83186124787205	7.03351391064584	-0.0877702670103034	0.698063808731251	0.878150009573393
Merged-chr2-168563408-4	chr2	168563288	168563488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	26977.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	5.94047350643754	6.20420686960436	5.70688753262465	6.18906576435663	5.48861090373454	5.50009317264725	5.65210918633762	5.6768253663582	-0.754709641622582	0.00485508232089487	0.0464989107264499
Merged-chr11-79523757-4	chr11	79523657	79523857	+	931.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077496)	promoter-TSS (NM_001077496)	5.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	4.89364064362055	4.57990401806249	4.3204585134013	4.80855700604389	5.01178291889332	4.64395140376018	4.53513920646983	4.85771181606093	0.225262229046783	0.546660749634665	0.796486196515084
Merged-chr9-78429065-2	chr9	78428965	78429165	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14172.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	3.07957997853833	2.99202754619253	3.80504109862993	3.07522995153962	3.12072092946576	3.63939744064708	3.60471981114779	3.80242058038069	0.937409560004131	0.135867336187171	0.410253303460174
Merged-chr15-98512110-2	chr15	98512010	98512210	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	7724.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	2.4041395896222	2.34077374279093	2.79143712027652	2.1314214055555	2.53853224585928	2.65485987534392	2.6636769376175	2.67306113584729	1.041932314572	0.171082832188821	0.46417018915068
Merged-chr3-45254997-3	chr3	45254894	45255094	+	693.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	123266.0	NR_045172	72511.0	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	4.68606642367418	4.58559490935302	4.51278043086422	4.1757389015955	4.3678207571443	4.02649002214014	3.88746444370378	4.06790277309378	-0.935278749524657	0.0329854210659997	0.178263759061306
Merged-chr1-136416448-4	chr1	136416352	136416552	+	981.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024328)	promoter-TSS (NR_024328)	-933.0	NR_024328	320054.0	Mm.208000	NR_024328	ENSMUSG00000097403	9230116N13Rik	-	RIKEN cDNA 9230116N13 gene	ncRNA	4.46698214348579	4.77596374763949	4.55429768592661	4.73660859884089	4.34270326153638	4.35134828746515	4.86051813420844	4.94401819657346	0.00707440348070672	0.985417198506428	0.994679311230532
Merged-chr17-7316009-4	chr17	7315930	7316130	+	922.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8630.0	NM_011553	21461.0	Mm.264651	NM_011553	ENSMUSG00000071322	Tcp10a	D17Leh66A|D17Leh66aa|Gm10326|T66A-a|Tcp-10a	t-complex protein 10a	protein-coding	4.7987848922429	4.648560405044	4.69037813605066	4.48490156508359	4.58231650118955	4.78513294050278	4.70540282592908	4.56799507937173	0.0266894561031828	0.939029336641532	0.977881364615113
Merged-chr1-152585720-4	chr1	152585623	152585823	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	39494.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.79297182973333	5.06636715708686	5.04805315838069	5.48643338743241	4.63313145127297	4.9706455642062	5.08704925221594	4.86845457172707	-0.490938321937557	0.167600949419117	0.4593900558646
Merged-chr14-65345239-4	chr14	65345144	65345344	+	956.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13432.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	4.81795270089514	4.67182183984587	4.21866811042006	4.79109149264424	5.18064594100038	4.75353844012084	4.90130936976865	5.24954279836845	0.775581787245505	0.0349754493561368	0.185190620376438
Merged-chr13-45623975-3	chr13	45623882	45624082	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 5 of 6)	(ATG)n|Simple_repeat|Simple_repeat	116538.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	3.95719530306007	4.14114070264639	3.91095414057436	2.84895554881565	3.6467923911594	4.21827449264349	3.38131842273151	3.75700827311479	-0.0933836485729128	0.885942043486839	0.957187485213487
Merged-chr1-91293919-3	chr1	91293824	91294024	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4414.0	NM_016717	50880.0	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	6.14648697267107	5.97587834488466	5.53616914774393	6.07393083627076	3.76051669786363	4.29997874899533	4.1381039236218	4.28068747233712	-4.15849520796603	1.37005623084432e-20	5.00098627975734e-18
Merged-chr15-101381941-3	chr15	101381847	101382047	+	811.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11822.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	3.93277305446488	4.29579177078169	4.14598295439511	3.75034802752935	3.372968119163	3.40721262069807	3.66359776950439	3.61873463947694	-1.62403680056647	0.00167351365560956	0.020337891154624
Merged-chr11-114931264-4	chr11	114931172	114931372	+	982.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199221, intron 1 of 3)	intron (NM_199221, intron 1 of 3)	3114.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	6.20547247341994	5.82716788425441	5.60617980019559	5.69971980148975	5.59379696783805	5.371284237918	5.86907886007466	5.78117858654974	-0.295842266558372	0.302716903572152	0.615215855664921
Merged-chr17-72890282-4	chr17	72890183	72890383	+	901.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28022.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	3.76309021551735	3.87784104543989	3.76361973095297	3.39135425610289	4.20617688061358	3.77170263940758	4.11336862399451	3.65008202051231	0.750356291184394	0.125955999315154	0.394223114732801
Merged-chr17-27622779-5	chr17	27622686	27622886	+	821.766663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291046, exon 1 of 5)	5' UTR (NM_001291046, exon 1 of 5)	178.0	NM_001291046	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	3.81836354340686	3.67241610978119	3.76673120213443	3.49081876216989	3.93959405755396	3.88721627252689	3.94619439545347	4.04942107762401	0.816965603607775	0.0671068973274337	0.276311786016625
Merged-chr4-148742863-4	chr4	148742777	148742977	+	894.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-61515.0	NM_001159344	69743.0	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	4.41159703495518	4.11154050932652	3.9002007017095	3.9889662972306	4.35158474879961	4.23587669317984	4.22966845982425	4.28894586385448	0.4321377866927	0.28936509681237	0.601359281175888
Merged-chr9-124027503-4	chr9	124027414	124027614	+	923.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009914, intron 1 of 1)	intron (NM_009914, intron 1 of 1)	5543.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	4.21344887002978	4.33812086782652	4.41018212519849	4.16765485277938	3.79271998018908	3.68763990235803	4.10789224057793	3.8176932710843	-1.13812297000696	0.0100332746946305	0.0791048360089833
Merged-chr1-136135210-4	chr1	136135098	136135298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	3808.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	7.91593333862835	7.98394352298022	8.22364938396402	8.26174201275995	7.94634088062368	7.77537506849062	8.06018439843912	7.83743098341065	-0.256413433484779	0.142891818639708	0.42089372062718
Merged-chr11-106458747-3	chr11	106458644	106458844	+	639.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 2 of 21)	intron (NM_023913, intron 2 of 21)	29052.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	3.35400056276762	3.39403199695766	3.52361535516189	3.49123738974706	3.61718722522369	3.19877001949989	3.60970199801381	3.62298128275849	0.277817566436331	0.58855498328987	0.819781378215106
Merged-chr10-115315531-4	chr10	115315427	115315627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024454)	promoter-TSS (NM_024454)	64.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	6.55479755450737	6.62732488157798	6.88132448166519	6.74102460314771	6.50673398647839	6.66607062073814	6.27441641532493	6.2823258110737	-0.384431323549855	0.0820594728306889	0.311034198658907
Merged-chr5-31054155-4	chr5	31054095	31054295	+	854.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023525)	promoter-TSS (NM_023525)	-585.0	NM_023525	69719.0	Mm.305535	NM_023525	ENSMUSG00000013629	Cad	2410008J01Rik|AU018859|Cpad	carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	protein-coding	3.77789887361599	3.39486171798601	3.57321332579758	3.43310269780454	3.8113194997283	3.84968874711464	3.61302540636366	3.51453278023209	0.511208854616459	0.295778913352886	0.607667841934993
Merged-chr7-19342216-4	chr7	19342116	19342316	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2855.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	4.37794390224572	4.27765358493979	4.11418467220251	3.70080373887609	4.84624233131144	5.03049235113911	5.07282204234831	5.09570958398105	1.99914320467079	2.74437772358668e-07	1.07448878980845e-05
Merged-chr16-30063309-4	chr16	30063212	30063412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2045.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	5.28780758612574	5.27657885267929	5.43204503157282	5.2114023540638	5.50291531663179	5.36931508641255	4.83804482109719	5.4008655271187	0.022094984862192	0.943411476144139	0.97956420615684
Merged-chr4-105291671-4	chr4	105291489	105291689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134242.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.74585342751479	4.9968928851722	5.21306827850722	4.72583022150547	4.90598258504481	4.99910069471201	4.94375285744221	4.70271423318544	-0.0626416488511332	0.853675036834494	0.944903737664624
Merged-chr3-130900329-4	chr3	130900240	130900440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-169942.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	6.24287489356241	6.47561102061299	6.82421548564354	7.14454189693965	6.6326298424938	5.92175859888651	6.73534713110048	7.0379505361636	-0.119730275428944	0.698426027486242	0.878372814998025
Merged-chr8-108767254-4	chr8	108767157	108767357	+	867.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	52613.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	4.31136688573215	4.17633886062951	4.16991608728547	4.53027474546098	4.44845660005152	4.24451620836549	4.33661379715776	4.69272782195976	0.282865325340376	0.478817224809316	0.754690163973656
Merged-chr17-56507827-4	chr17	56507730	56507930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4653.0	NM_011483	20834.0	Mm.76862	NM_011483	ENSMUSG00000044526	Znrf4	1700094M01Rik|Ssrzf1|spzn	zinc and ring finger 4	protein-coding	7.60366458729495	7.46697368156649	7.10431888754527	7.0724065718282	7.10919379619222	7.28161083560081	7.25796474351429	6.98575248855274	-0.2203435035645	0.29894838423256	0.61123278778874
Merged-chr5-146818952-4	chr5	146818866	146819066	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-13924.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	4.67050051483095	4.65521459082486	5.49778152463436	5.0933798260936	4.74730209040392	4.84991758517608	4.98592598012317	4.86735759303428	-0.325886674046383	0.379162374545204	0.681731129295467
Merged-chr11-113751870-4	chr11	113751775	113751975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020006)	promoter-TSS (NM_020006)	-60.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	6.50008463098954	6.78307232889606	6.33584450265149	6.52418220559774	6.79621252543689	6.72857838385493	6.94657645112357	6.6272936051555	0.333033221849876	0.12258386795597	0.388054131075738
Merged-chr19-61021720-1	chr19	61021620	61021820	+	674.0	f0_balb.idr	intron (NM_018869, intron 2 of 15)	intron (NM_018869, intron 2 of 15)	119120.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	2.51044000030957	2.30731224064386	2.39202679169018	2.7978997371856	2.00332939400663	2.05201983744891	2.03323798207402	2.03630363443029	-4.73439856484563	6.89816364450807e-05	0.00148294892797475
Merged-chr3-107357343-4	chr3	107357252	107357452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24063.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	4.94019141679935	5.2024588673364	5.31021432226541	4.89768063168171	5.07331702427941	4.70621093632216	5.1436194796943	4.61514688075954	-0.346042407788879	0.320703741449087	0.63245145906536
Merged-chr12-100187591-4	chr12	100187502	100187702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045282)	promoter-TSS (NR_045282)	-366.0	NR_045282	100038378.0	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	-	predicted gene 10433	ncRNA	8.60243837955883	8.83279188190953	8.50806205157903	8.66177301225221	8.54460220729977	8.72973537879428	8.69125428820022	8.61205517234431	-0.0189092851873985	0.902137356304588	0.963687586843739
Merged-chr5-100513703-4	chr5	100513573	100513773	+	874.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4636.0	NM_001359203	26891.0	Mm.957	NM_012001	ENSMUSG00000035297	Cops4	AW208976|D5Ertd774e|SGN4	COP9 signalosome subunit 4	protein-coding	3.74668488813539	3.64914441945549	3.74721932223024	3.85590699352633	3.58429145910278	3.51531499393197	4.00097157580408	3.63961092106994	-0.179557253191432	0.708521598789532	0.882900028609472
Merged-chr10-60390822-2	chr10	60390722	60390922	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 30 of 68)	intron (NM_001252635, intron 30 of 68)	-8904.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	3.32516732794063	3.15869241354844	3.14887072934306	3.37652910123011	3.23402598623816	3.43772381380585	3.19915742756851	3.37760638067618	0.176876658575672	0.741963782430707	0.898417179766546
Merged-chr5-65357150-4	chr5	65357053	65357253	+	981.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031180, intron 1 of 4)	Charlie21a|DNA|hAT-Charlie	8742.0	NM_031180	83379.0	Mm.45274	NM_031180	ENSMUSG00000029195	Klb	AV071179|betaKlotho	klotho beta	protein-coding	4.87381278378184	4.88216587321129	5.39703210262248	5.27681229171711	4.4083790832489	4.97417726428029	5.18128091951749	5.0148933537272	-0.419064179049929	0.259412208758306	0.571250530584125
Merged-chr6-120187801-4	chr6	120187694	120187894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-6029.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	6.82142614879059	6.41050294785135	6.37920433470096	6.98304142726113	6.5466043978501	5.96620905113914	6.72206231020923	6.17676238528889	-0.423633670573098	0.123668340677167	0.390081929498364
Merged-chr1-138923112-4	chr1	138923014	138923214	+	966.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-40595.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	5.07532478588658	4.90826925431416	5.32110729155045	5.66682071064022	4.96629564592592	4.91071146761931	5.26644214770492	4.81187223406549	-0.553009585372535	0.11700327511988	0.378500655129107
Merged-chr5-43865478-4	chr5	43865370	43865570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3339.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	7.23163027948667	7.07461348868617	7.29381366767351	7.17216979877257	6.9356950634475	6.64796566402664	6.91899182868326	6.84069388176053	-0.477563431544373	0.0134560211616558	0.0973260979845035
Merged-chr11-82007040-5	chr11	82006976	82007176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28501.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	6.65880931121746	6.67417663166375	6.64475248971523	6.56648115591889	6.58169156045623	6.7420041046049	6.79473040566429	6.51130922023716	0.0387011831623685	0.850023088344257	0.943377775572077
Merged-chr14-61774901-4	chr14	61774802	61775002	+	915.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-92529.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	4.80245938845831	4.07599558091292	4.59214914965406	4.62471758223519	4.43147325914757	4.09006076565164	4.6441148250898	4.6268126814279	-0.185874494737496	0.655924201661456	0.856391692651398
Merged-chr2-146834982-2	chr2	146834868	146835068	+	656.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20921.0	NM_001033298	228730.0	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	3.96017043892642	3.7916261470576	3.61933667937102	3.74964635674486	3.36233769587053	3.84663389388852	3.29631743134674	3.86979742313615	-0.518346945653317	0.321247204211034	0.632987895818214
Merged-chr8-34149754-4	chr8	34149678	34149878	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-3039.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	4.22289168919558	3.7050505524963	4.30172758481099	3.70017432080307	3.72034791294103	3.73817601236393	3.83573196487291	4.37216444724815	-0.163574741599567	0.747577356549099	0.900630985096871
Merged-chr1-24678610-4	chr1	24678522	24678722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310483)	promoter-TSS (NM_001310483)	78.0	NM_026719	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	8.66018529320845	8.74488683185998	8.61645438364636	8.69730965105794	8.68140968081114	8.67364020757736	8.91211779950176	8.50589962782545	0.025037610203287	0.87217609626408	0.951937780510327
Merged-chr1-183299346-4	chr1	183299234	183299434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181732, intron 1 of 9)	RLTR33|LTR|ERVK	-2041.0	NR_151660	71678.0	Mm.392270	NM_027861	ENSMUSG00000046836	Brox	0610010K06Rik	BRO1 domain and CAAX motif containing	protein-coding	7.31766242773635	7.05435853607947	8.0812011681813	7.0608384254796	6.5456476607379	6.89656842195066	6.71405670360669	8.00751107580322	-0.356122172394248	0.525424878713586	0.783252235625498
Merged-chr2-164360447-4	chr2	164360347	164360547	+	796.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3940.0	NM_011414	20568.0	Mm.371583	NM_011414	ENSMUSG00000017002	Slpi	ALP	secretory leukocyte peptidase inhibitor	protein-coding	3.81313960126078	3.780370609155	3.49260914207568	3.5583402066898	4.10912163140055	3.78169029669767	3.53858254078143	3.29592126291153	0.184953944472374	0.730841506587508	0.893302325057393
Merged-chr2-116984043-4	chr2	116983956	116984156	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83904.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	5.20214768205405	5.32777778944925	5.40036661411209	4.94729347707458	5.26080215779441	5.14518181338839	4.61646144897594	5.00184296932815	-0.34589780558324	0.311963915500906	0.623813898793094
Merged-chr5-143526898-4	chr5	143526781	143526981	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347530, intron 1 of 6)	intron (NM_001347530, intron 1 of 6)	1112.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	4.94526433071915	5.47767401703658	5.12157237761545	5.36178039720006	5.09511595267547	5.15904260096754	5.22034544187422	4.740115218507	-0.350378695443646	0.28483586465593	0.596602183749064
Merged-chr8-27261258-4	chr8	27261166	27261366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007918, intron 1 of 2)	intron (NM_007918, intron 1 of 2)	939.0	NM_007918	13685.0	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	8.56278937016685	8.71389483481593	8.64150079368798	8.66392581450083	8.36322700293077	8.48180064222884	8.64097689820552	8.31021456888551	-0.244812487896003	0.11400564441851	0.373450486813086
Merged-chr17-44777135-4	chr17	44777049	44777249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357320)	promoter-TSS (NM_001357320)	-17.0	NM_001357320	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	8.22294071760282	8.08111824260556	8.06115752160066	8.16323254638914	8.36843267104678	8.5300331078203	8.36596066801044	8.29879637530194	0.328273203263171	0.0327791138970256	0.177468969960933
Merged-chr6-34317581-4	chr6	34317485	34317685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009658)	promoter-TSS (NM_009658)	-96.0	NM_009658	11677.0	Mm.451	NM_009658	ENSMUSG00000001642	Akr1b3	ALR2|AR|Ahr-1|Ahr1|Akr1b1|Aldor1|Aldr1	aldo-keto reductase family 1, member B3 (aldose reductase)	protein-coding	8.03161123971185	8.03484263539303	7.77946035047124	8.11214177888995	7.98119587216125	7.82162430749219	8.10100966499312	7.85949389140027	-0.0696431033025932	0.683623195465145	0.870394242877558
Merged-chr8-33642464-2	chr8	33642364	33642564	+	707.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178648)	promoter-TSS (NM_178648)	-488.0	NM_178648	108159.0	Mm.29301	NM_178648	ENSMUSG00000052906	Ubxn8	D0H8S2298E|Rep-8|Rep8h|Ubxd6	UBX domain protein 8	protein-coding	3.18672510478073	3.13479335912184	3.41216304709575	3.23820875845144	3.04069266357392	3.23590237751753	3.17574626718136	3.60079784183632	0.114824624922543	0.838905195986231	0.938856878340637
Merged-chr1-4858121-1	chr1	4858021	4858221	+	1000.0	f0_balb.idr	promoter-TSS (NM_001159751)	promoter-TSS (NM_001159751)	-207.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	4.92950007018669	5.27054172563132	5.23122181029869	5.51849326039569	5.38502630373971	5.96469971797827	5.39147599705071	5.85207657840181	0.683084424948673	0.0354921706959169	0.186980772553081
Merged-chr8-104028871-4	chr8	104028774	104028974	+	808.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72751.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	3.56521272801273	3.69944589094831	3.50923179829958	3.62969006377045	3.57349330637781	3.73704562677688	3.84284804029764	3.32233982400249	0.0816659495476294	0.869205124070089	0.950896832752134
Merged-chr11-102189612-4	chr11	102189495	102189695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175935)	promoter-TSS (NM_175935)	-104.0	NM_175935	68401.0	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	6.89646887944355	6.95509721016994	6.54143838313421	6.6788372257839	6.80069236387184	6.90855811500417	6.72690039582935	6.7419940729978	0.028876856080842	0.889545581742678	0.9585926991289
Merged-chr13-108015357-4	chr13	108015278	108015478	+	981.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29096.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	4.9974276085564	4.92528144811485	4.99825883230867	5.27211974789988	5.01344086706026	5.10146002597941	5.07295815821587	4.84883523611609	-0.117673608707853	0.712129539373677	0.884727078056288
Merged-chr2-102400673-4	chr2	102400575	102400775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020267, exon 1 of 5)	exon (NM_020267, exon 1 of 5)	225.0	NM_020267	80985.0	Mm.315002	NM_020267	ENSMUSG00000027189	Trim44	Dipb|Mc7	tripartite motif-containing 44	protein-coding	5.52854235442569	5.76313925530972	5.92817592472553	5.63418932370557	5.71212351451786	5.89445575999775	5.85467725581657	5.78884699514812	0.154159555508882	0.548841945801907	0.797672707712791
Merged-chr2-180045529-4	chr2	180045430	180045630	+	964.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178750, intron 1 of 10)	intron (NM_178750, intron 1 of 10)	3047.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	5.1768252015618	5.23195391528154	4.9504515329992	5.10126285580168	4.9857285684435	4.89512987768839	4.81641249860191	4.87405357826828	-0.431769443569043	0.168480247467137	0.460602839701312
Merged-chr11-50026940-4	chr11	50026848	50027048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	1617.0	NM_001290750	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	6.56252730447554	6.71391165769333	6.63854798460643	6.63057019610384	6.32091837780852	6.09205860077554	6.38359964163221	5.85495408757181	-0.667924367941872	0.00396896290856661	0.0398121210356345
Merged-chr2-6476919-4	chr2	6476812	6477012	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124176.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	3.82619428894365	3.85359658070087	4.16003141117173	4.59415018125599	4.02093172552863	4.28810083943409	4.68801955814171	4.73979581479998	0.709472646618379	0.152500965315749	0.436710098576188
Merged-chr9-65533573-4	chr9	65533470	65533670	+	951.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	46517.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	5.0224144907932	4.76411654650126	4.48407496891075	4.43861588647737	4.69812381012727	4.66035997148851	4.50758303797987	4.68731153344167	-0.093184684949854	0.801622799939808	0.923495023618862
Merged-chr2-102161424-1	chr2	102161324	102161524	+	668.0	f0_balb.idr	intron (NM_178886, intron 1 of 5)	intron (NM_178886, intron 1 of 5)	25036.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	3.5269080374553	3.43820522454393	3.30915765881865	3.68439442432336	3.32511813077608	3.08212916470958	3.4625790183112	3.47442519245925	-0.56694401812465	0.299568976652053	0.611816257004375
Merged-chr11-70970071-4	chr11	70969974	70970174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252413)	promoter-TSS (NM_001252413)	-101.0	NM_001276406	19069.0	Mm.288962	NM_172394	ENSMUSG00000040667	Nup88	Nup84|Prei2	nucleoporin 88	protein-coding	8.21721947264755	8.27274606937763	8.12120626052152	7.96856500836676	8.19412075225609	8.15122541212651	8.31260011428615	8.22478959039625	0.0999059357298372	0.53511517970735	0.789588577217386
Merged-chr14-67188988-4	chr14	67188889	67189089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44303.0	NM_010095	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	5.38326858105643	6.00674349365668	5.7649529706632	5.49028098393867	5.43177978176608	5.86679797222491	5.29308556997596	5.87300417231049	-0.0765403384987242	0.805102971849669	0.925171083261684
Merged-chr6-136466123-4	chr6	136466037	136466237	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50568.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	4.8571462681022	4.73788762627615	5.14427735418513	4.88979464397584	4.72497464646188	4.62022622764288	4.79880804632601	4.85470132454843	-0.326098443495732	0.330839552336426	0.642094846510006
Merged-chr4-126201880-4	chr4	126201788	126201988	+	983.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356456)	promoter-TSS (NM_001356456)	822.0	NM_001356455	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	4.9466743536715	5.22343218891015	5.17356086900939	5.15269147737092	6.03850930614708	5.68089857857325	5.3392679165595	5.58071273777003	0.988869154527334	0.0011646181032078	0.015210339810684
Merged-chr2-121140527-4	chr2	121140444	121140644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177846, exon 1 of 1)	exon (NM_177846, exon 1 of 1)	116.0	NM_001290812	75894.0	Mm.384805	NM_029475	ENSMUSG00000027259	Adal	4930578F03Rik	adenosine deaminase-like	protein-coding	7.1494618288398	7.2737612691444	7.43590096256012	6.91056331293517	6.95793326297727	7.46783546805461	6.71552696320693	7.27589082129167	-0.0918512283400057	0.697851818739906	0.878035052717631
Merged-chr11-11788813-4	chr11	11788679	11788879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20183.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	6.11938422532783	6.42681175998138	7.08261534102476	6.20719649629674	6.14346001143089	6.4806000069224	6.29003584117087	6.35475864042306	-0.28394269247434	0.317007172865038	0.628905690750891
Merged-chr11-116030355-5	chr11	116030289	116030489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172569)	promoter-TSS (NM_172569)	73.0	NM_172569	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	6.89664601089162	7.52309374614564	7.28179893638393	6.30484875583494	7.2940326526906	7.54842461609352	6.8487431893216	7.50288774197507	0.339768690890902	0.244771375824998	0.55588259948383
Merged-chr2-154597616-4	chr2	154597519	154597719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021534, intron 1 of 3)	MTC|LTR|ERVL-MaLR	6054.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	5.93213375725815	6.43268285162269	6.51874200586432	6.24122203915793	6.15660233250018	5.7888003812012	6.08095139691423	6.31860458341398	-0.296578295277937	0.250017096724528	0.561127915062205
Merged-chr6-5425654-4	chr6	5425520	5425720	+	894.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355662, intron 3 of 4)	intron (NM_001355662, intron 3 of 4)	35210.0	NM_001355662	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	4.00763169276375	4.10989518399064	4.24648794252729	4.48764912868086	4.05882002250376	3.96292051304317	4.13839841367326	4.48055551504964	-0.167831780949676	0.699403108998919	0.878772573452614
Merged-chr13-62624144-4	chr13	62624020	62624220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324406)	promoter-TSS (NM_001324406)	62.0	NM_001324406	211378.0	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding	6.79894451121386	6.87494785125888	7.24298063754873	6.85946055227096	7.23676975718216	7.28518181737551	7.54026015126263	7.46168915161139	0.592333521993339	0.00322084531515715	0.0337290788123541
Merged-chr10-14197351-4	chr10	14197219	14197419	+	851.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	230940.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	3.50819471114217	3.27271317729078	3.67711338712137	3.27818036956658	3.63250701359222	4.24644085691676	3.85442111659009	3.44568510784836	1.1927605479364	0.0243544760243596	0.145812116969252
Merged-chr3-79886033-3	chr3	79885968	79886168	+	792.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133187, exon 1 of 4)	5' UTR (NM_133187, exon 1 of 4)	138.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	3.31302732679565	3.29731326501937	3.62373433644093	3.34124086376623	3.06368946959365	3.4854603576647	3.35747665528234	3.25198433559846	-0.378197473246672	0.489062518622431	0.761571656414145
Merged-chr5-150155656-4	chr5	150155560	150155760	+	859.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104270.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	4.13065564533333	4.13113115121651	3.91923291923161	3.86945152975437	4.4493427873726	4.39892494184098	4.62475368721657	4.26782692949476	1.07789405987756	0.00644803878586166	0.057241824986137
Merged-chr12-17666795-4	chr12	17666687	17666887	+	953.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24022.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	4.56769854934007	4.47440036627483	4.20658967848572	4.33938566285126	4.50786356217359	4.43611546280021	4.88681597984296	4.67843158773224	0.530276306425296	0.154507717743367	0.439801241388062
Merged-chr1-157433604-1	chr1	157433504	157433704	+	839.0	f0_balb.idr	Intergenic	Intergenic	-21009.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	3.37308295487306	3.44965824866491	3.47295125022081	3.61301082763146	2.9271124458826	2.82484512427616	2.86879702465089	3.08355984491993	-2.39880019955785	0.000214013859761173	0.00385262835709169
Merged-chr5-23114402-4	chr5	23114291	23114491	+	935.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029990, intron 2 of 2)	intron (NM_029990, intron 2 of 2)	319962.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	5.43534018722954	5.68567572824163	5.71092237199359	5.9779232126447	5.00902967853546	4.89467278662999	5.29285366045167	4.84197504204233	-1.27522188593032	4.66828202203993e-05	0.00106398862006654
Merged-chr14-27397784-4	chr14	27397665	27397865	+	867.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 9 of 10)	intron (NM_027871, intron 9 of 10)	-31069.0	NM_028945	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	4.74495635751297	4.19606386381858	4.42267430703197	4.59314508891017	4.11208466364781	4.0555499964811	3.97345492976797	4.57363227602448	-0.73398929645598	0.0867732652540403	0.321249977943483
Merged-chr10-39458994-4	chr10	39458888	39459088	+	983.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	89189.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	5.43887046618895	5.2699908051358	5.87158767205771	6.17953575140388	5.48274040488514	5.1999005622053	5.92408025300912	5.63171897252762	-0.282618338337092	0.409631648418297	0.705214871926678
Merged-chr2-129175809-4	chr2	129175728	129175928	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4845.0	NR_045264	100048701.0	Mm.428544	NR_045264	ENSMUSG00000084826	AI847159	-	expressed sequence AI847159	ncRNA	5.27974814480287	5.32107986757811	4.92480309181426	5.27405142516426	5.64757103532229	5.54428568672152	5.15845602971969	5.55478311572357	0.494780075505602	0.0999064227354292	0.346720588195276
Merged-chr18-67873680-3	chr18	67873576	67873776	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027556, intron 41 of 45)	ORR1E|LTR|ERVL-MaLR	-59497.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	3.23481763812212	3.41079876721434	3.23519038743213	2.48087543226689	4.88409247147359	4.40054582963129	4.78678103484641	4.7230655777277	5.42938741184662	0.000138833030025353	0.00267514787335534
Merged-chr2-30464589-2	chr2	30464489	30464689	+	896.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9610.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	3.06396689105251	2.90114298863383	2.9461795341449	2.7051503063148	2.85445406293273	3.05599300364461	2.99514982005083	3.00503003097343	0.333710362631043	0.579594414636947	0.815428040231717
Merged-chr17-5494873-3	chr17	5494817	5495017	+	758.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	2317.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	3.20349055711673	2.98565419287115	3.09759754028165	3.08029683771181	2.88930991303019	2.74023263550988	2.97091422622593	2.91784933824391	-0.912138323063338	0.133242655947183	0.406546145412697
Merged-chr17-17862430-1	chr17	17862330	17862530	+	630.666687	f0_balb.idr	Intergenic	Intergenic	-7242.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	3.73493474479988	4.28392789563575	3.78365344071644	3.33675382177113	3.05737815596785	3.31679854138111	3.56440805102571	3.33625179285875	-1.65588807941292	0.00583619067884389	0.0532241148404137
Merged-chr11-70213102-3	chr11	70212989	70213189	+	860.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153081)	promoter-TSS (NM_153081)	-821.0	NM_153081	216867.0	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding	4.17254930720275	4.25803977222456	4.26063019688945	3.99923394592857	3.95234456420001	4.34416788507573	4.01292741154101	4.12460367934402	-0.148488548676321	0.721720910531807	0.888885724754616
Merged-chr18-38025123-4	chr18	38025042	38025242	+	836.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26173.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	3.59450729162697	3.67110760940249	3.86835408418722	3.83123440447339	3.48070917097648	3.99047522197565	4.03310662980092	4.09112665662651	0.467091887112011	0.335773531588003	0.64596405862057
Merged-chr10-80071257-4	chr10	80071163	80071363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 5 of 31)	(T)n|Simple_repeat|Simple_repeat	4176.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	7.97422152367028	7.89737782708594	7.78573350034375	7.84409349576224	7.91947256054765	8.11808069928126	7.70023332799299	7.88617397802449	0.0484095241057816	0.777014983685411	0.913034573074491
Merged-chr3-21937442-4	chr3	21937354	21937554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139198.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.93698704855945	6.30622526807545	6.41994821573847	6.5570588865758	6.2443696573339	6.18704698700607	5.90785416103448	6.54205412935135	-0.14574136688969	0.579945660544039	0.815517916470182
Merged-chr19-45015728-3	chr19	45015660	45015860	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145503, intron 1 of 4)	CpG	550.0	NM_001130525	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	3.89177220767897	3.21303099818854	3.38690718842401	3.19171207378502	3.40948727671312	3.18175917350365	3.42807088372209	3.20402317848694	-0.460968179406997	0.427606069619428	0.718776063984916
Merged-chr13-111797733-3	chr13	111797635	111797835	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	11258.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	3.72489290315764	3.48542129392934	3.68038383949694	3.2056584496915	3.35666152161711	3.22384186415177	3.29765969440855	3.36768426272403	-0.749578723182175	0.173431633331126	0.467492905300771
Merged-chr15-3270997-4	chr15	3270886	3271086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009155)	promoter-TSS (NM_009155)	9.0	NM_009155	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	5.74862143907269	5.78100659334692	5.5947756161298	5.48957145350967	5.98531374270412	5.71531386823244	5.94106195878789	5.47616758626867	0.256955958941588	0.347559521630567	0.655546119710951
Merged-chr1-191199241-3	chr1	191199125	191199325	+	939.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15892.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	3.92023816273262	4.1529960792987	4.30971074299928	4.11848722687457	3.85538887608868	3.75848227522721	3.85363812411538	3.81341258740107	-0.858830530184146	0.0503467917024281	0.232809347533757
Merged-chr5-67437665-3	chr5	67437560	67437760	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9861.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	4.69159667418551	4.73273900385415	4.62305923985211	5.33484391342175	3.91953403327373	3.93821572302646	4.03862432204399	3.9975990248187	-2.49145374305664	5.95133487386958e-08	2.67938055020343e-06
Merged-chr7-16257992-4	chr7	16257890	16258090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	intron (NM_001173550, intron 1 of 1)	1348.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	7.84431489052683	8.42993771175351	8.30252336203155	8.00456235640301	8.14641822492779	8.23712545524029	8.29008468996562	7.38679932035063	-0.130671608783577	0.580061040663182	0.8155686876714
Merged-chr13-23585971-4	chr13	23585863	23586063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290530)	promoter-TSS (NM_001290530)	7.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	7.49084211119148	7.72338785145694	7.1998258453504	7.46423980778667	7.6000139621773	7.58261717634379	7.41743185797764	7.52363984312561	0.0648258485258545	0.730378172715908	0.893046416190519
Merged-chr14-73141282-2	chr14	73141182	73141382	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1228.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	3.28663567449736	3.16824263508475	3.3419748227642	2.96589660917471	3.37169337859472	3.28187536974619	3.03158437747298	3.3925891340951	0.344937765550423	0.540433720724548	0.792791916938885
Merged-chr8-111300346-4	chr8	111300232	111300432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146218)	promoter-TSS (NM_146218)	-110.0	NM_146218	234736.0	Mm.334816	NM_146218	ENSMUSG00000033596	Rfwd3	BC027246	ring finger and WD repeat domain 3	protein-coding	8.86211911271413	9.05878427760484	8.7622395191098	8.87793876648917	8.81107174917821	9.10585625389439	9.08259181788241	8.82640064010239	0.0815886012905992	0.606519210431874	0.829470111232738
Merged-chr9-110452711-4	chr9	110452612	110452812	+	958.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360306, intron 2 of 9)	intron (NM_001360306, intron 2 of 9)	23982.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	5.11260229748867	4.53066423408009	4.84888547763127	4.83462523646284	5.09694014097199	4.69538402425558	4.93068318939118	4.98472179487065	0.201375940351628	0.557927589208773	0.802948476800432
Merged-chr3-87910785-4	chr3	87910737	87910937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331051, intron 1 of 6)	intron (NM_001331051, intron 1 of 6)	3987.0	NM_001331052	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	6.27979494128577	6.33027678201624	6.02670748109979	6.25889397612581	6.44256416664873	6.39892189938618	6.82087536731131	6.45496555018478	0.454021091912383	0.0481046757220269	0.226278265478334
Merged-chr19-46709211-3	chr19	46709105	46709305	+	819.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020577, intron 4 of 10)	intron (NM_020577, intron 4 of 10)	1762.0	NM_020577	57344.0	Mm.28566	NM_020577	ENSMUSG00000003559	As3mt	2310045H08Rik|Cyt19	arsenic (+3 oxidation state) methyltransferase	protein-coding	3.59136439258017	3.43550583348151	3.49870380722075	3.77043586031032	2.85685522050586	2.84260897720271	2.95931105655884	2.89266464155344	-3.23372602659209	6.77691499649331e-06	0.000194662644283857
Merged-chr12-41494872-3	chr12	41494777	41494977	+	930.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	-8820.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	3.94221310257181	3.91198873013421	4.28805104825658	4.5229744220205	3.57908314162592	3.44322293936709	3.59329410691385	4.16662645385742	-1.31739271833852	0.0131384934610707	0.0957004529334378
Merged-chr15-64312818-4	chr15	64312715	64312915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276462)	promoter-TSS (NM_001276462)	-142.0	NM_001276463	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	7.8430150468958	8.10505337884152	7.70641691519969	7.79469438678145	8.20322219378709	8.33306967707198	8.09871746509969	7.97700419642702	0.371758534439599	0.0358701031387663	0.188108603205941
Merged-chr2-36278920-4	chr2	36278817	36279017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44C|DNA|TcMar-Tigger	48491.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	6.64217354975032	6.990965471278	6.61085058521664	6.79671979729126	7.05965373446108	6.92767101574066	7.02678853031588	6.68581352995087	0.228830725168082	0.278455659537288	0.590625310604573
Merged-chr7-28338840-4	chr7	28338744	28338944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013676)	promoter-TSS (NM_013676)	-125.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	7.83109913874613	8.15736261485036	7.38469863101371	7.62995559077504	8.04354306355225	8.10412816603796	7.93623943499371	7.54085189235023	0.185543483297425	0.404665355963837	0.701732715768529
Merged-chr15-79516399-4	chr15	79516381	79516581	+	930.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134090)	promoter-TSS (NM_134090)	73.0	NM_134090	105785.0	Mm.298199	NM_134090	ENSMUSG00000010830	Kdelr3	AI173274	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3	protein-coding	4.46669126750596	4.64131791919147	4.46741133431096	4.29338858525601	4.31160791270924	4.28272172730899	3.98113069489748	4.29634097280016	-0.570358868302608	0.151832280978381	0.435599671700691
Merged-chr4-46305549-1	chr4	46305449	46305649	+	602.0	f0_balb.idr	Intergenic	Intergenic	-38645.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	3.2186280505597	3.21591645273016	3.49238570010612	3.1919097321762	3.36122645787157	3.13214732600931	3.20763488446289	3.53842096559866	0.152701829700999	0.779416777769134	0.91394323833457
Merged-chr17-30494468-3	chr17	30494366	30494566	+	929.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172618, intron 6 of 11)	intron (NM_172618, intron 6 of 11)	81821.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	3.92993912186402	3.73314411963211	4.02443594366176	4.18367602740031	3.87254093295056	4.14756814821383	3.813764362811	3.59773330235615	-0.324632169808584	0.488980876475788	0.761571656414145
Merged-chr5-98016984-4	chr5	98016902	98017102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133738, intron 3 of 16)	intron (NM_133738, intron 3 of 16)	13960.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	6.66586227818776	6.73883725399295	6.86454410547408	6.86540005112704	6.63723086593887	6.53500719796916	6.66318050020274	6.76496316345616	-0.198399783678765	0.324548586589727	0.636147046452338
Merged-chr7-141172831-4	chr7	141172727	141172927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172100)	promoter-TSS (NM_001172100)	24.0	NM_001172100	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	6.8181161788232	6.91160336155613	6.65256903499319	6.87756970169758	7.02443411184619	7.1173995871317	7.03969938318482	6.96162988369095	0.292627846000099	0.126968917068233	0.396406523808084
Merged-chr1-64304626-2	chr1	64304526	64304726	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-183237.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	3.49892086097789	3.17948987471861	3.29707987081281	3.27792801227981	3.07510376196109	3.22923589900619	3.04581900635391	3.34933434058486	-0.530811713276249	0.340490674402239	0.649631053509448
Merged-chr8-124586822-3	chr8	124586718	124586918	+	992.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023709, intron 1 of 19)	intron (NM_023709, intron 1 of 19)	10707.0	NM_023709	73647.0	Mm.6209	NM_023709	ENSMUSG00000031981	Capn9	2200003B16Rik|GC36|nCL-4|nCL4	calpain 9	protein-coding	4.84231017705997	4.57320863479653	4.84321814534826	5.27232227137119	3.12422158066608	3.45302084181826	3.47325088960382	3.40391156425962	-6.95607529858364	3.9423794559351e-11	3.21069367613277e-09
Merged-chr1-55049270-4	chr1	55049165	55049365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3505.0	NM_026424	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	6.18295471745249	6.29787357673872	6.41603147676363	5.70577872735152	6.37391231684609	6.12514545358974	6.29931606612076	5.87054752498284	0.0397437590037153	0.885905399883649	0.95718457248159
Merged-chr16-94546193-8	chr16	94546063	94546263	+	903.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19534.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	3.14028434011273	3.27696428553013	2.87314668471362	3.15022882277548	3.5117179370559	3.18803693793198	3.18799123651499	3.19820774272104	0.617176721672009	0.283338263653162	0.595410199237377
Merged-chr17-87304546-4	chr17	87304453	87304653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	21667.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	7.37747736831961	7.38083515179433	7.28609332506975	7.5142969142129	7.31812129136929	7.3281427001334	7.4094928497057	7.2703091153454	-0.0923829347174903	0.600193088528773	0.826747091301587
Merged-chr7-19676013-4	chr7	19675902	19676102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001309799, intron 1 of 3)	intron (NM_001309799, intron 1 of 3)	1939.0	NM_001277944	11813.0	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	6.82618826951803	6.63816930307539	6.53012619829223	6.65743261097125	6.65672762798406	6.4075021180997	6.94149857318759	6.45657981630813	-0.0423929201504206	0.849780230752474	0.943287725008123
Merged-chr3-41245096-4	chr3	41244980	41245180	+	937.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-162034.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	6.68289691586982	6.50587866210729	6.99989053357319	7.04145866180832	4.99558498919455	5.21950290681853	5.65335453199749	5.70743137437453	-2.2255468223252	2.71959316544336e-14	3.95922740954034e-12
Merged-chr5-118380673-5	chr5	118380588	118380788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135461.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	4.47165430158305	4.60626800833358	4.63953260536603	4.52636147335124	4.59158981685416	4.84963209278969	4.6561348502225	4.7488140198625	0.322095567183547	0.348866151996703	0.656535237677483
Merged-chr19-8920427-4	chr19	8920335	8920535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024256)	promoter-TSS (NM_024256)	42.0	NM_024256	72727.0	Mm.259	NM_024256	ENSMUSG00000071649	B3gat3	2810405M13Rik	beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	protein-coding	6.87515286306037	7.0890293718307	6.87635655123316	6.82321967795767	6.99190315698175	6.73476076868648	6.7151692716978	6.9745818053737	-0.0697326384078275	0.73079680488592	0.893278365417209
Merged-chr1-180263650-4	chr1	180263558	180263758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEb|LINE|L1	-7358.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	7.66642553097243	7.85205237049304	7.50023895572826	7.55829612431067	7.52289549849253	7.76838545319091	7.44430047029072	7.5322249202334	-0.105703808285591	0.562595831860131	0.805707247859895
Merged-chr7-43278096-3	chr7	43277999	43278199	+	849.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35201.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	3.73881791219822	4.6857015598723	4.04257173230759	3.62837090189188	3.75885938497761	3.97280897630934	3.60713630129347	3.48933786462449	-1.04061715861688	0.0598638019891231	0.258104401343739
Merged-chr6-7967622-3	chr6	7967498	7967698	+	940.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122374.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	3.28897905815596	3.53779219953235	3.67948238808011	3.77435155176632	3.64278983694507	3.52482041481481	3.4577334929698	3.52412189418107	-0.168375134424302	0.742155844687927	0.898417179766546
Merged-chr7-49471522-3	chr7	49471419	49471619	+	653.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 10 of 37)	intron (NM_175272, intron 10 of 37)	165316.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	3.4376917597123	3.25694355013023	3.38799643825585	3.17060454019745	3.12697753463835	3.21262374572939	3.15336042214628	3.0352958541485	-0.683231805188094	0.219600306064439	0.527217019204017
Merged-chr3-136790339-1	chr3	136790239	136790439	+	793.0	f0_balb.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	120273.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	3.47754842520858	3.90392329839366	3.59264971288304	3.87394597025276	3.56957601791847	3.65205419606338	3.46569613923168	3.64436856946952	-0.475282609923779	0.336266419961261	0.646333562921219
Merged-chr2-160365658-4	chr2	160365516	160365716	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010658, exon 1 of 1)	3' UTR (NM_010658, exon 1 of 1)	1449.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	4.98843917654617	4.965639001029	5.17779131018712	5.22876992203201	4.5406761910043	4.82039476387719	4.66330345682852	5.17417286346855	-0.574038748495651	0.0976237508066647	0.342421571904971
Merged-chr17-33902605-4	chr17	33902522	33902722	+	866.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2513.0	NR_040470	474160.0	Mm.206186	NR_040470	ENSMUSG00000092349	Platr17	-	pluripotency associated transcript 17	ncRNA	3.70067466734003	3.60964868487629	3.94319650563644	3.49876823089788	3.64723008040913	3.82049195921377	3.73777809844725	3.84949199739463	0.232852035003127	0.621907935781223	0.838127093809464
Merged-chr1-89466529-3	chr1	89466407	89466607	+	830.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	MTEa|LTR|ERVL-MaLR	11696.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	3.99254187467137	3.66717204539142	3.72934675261014	3.71814846083574	3.58037158439866	3.37611748073399	3.44531359479865	3.45589734016115	-0.986507893531576	0.0489089399088582	0.228656120444835
Merged-chr14-104867740-4	chr14	104867638	104867838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015593, intron 2 of 5)	intron (NR_015593, intron 2 of 5)	228591.0	NR_015593	320249.0	Mm.320725	NR_015593	ENSMUSG00000115432	D130009I18Rik	-	RIKEN cDNA D130009I18 gene	ncRNA	6.29780928746911	6.37451007435628	6.89790410762914	6.68022857296817	6.74828705753725	6.10271327894198	6.24740128959349	6.08650387895946	-0.361025713359054	0.185149023694933	0.482979743219862
Merged-chr10-88492870-4	chr10	88492759	88492959	+	861.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144807, intron 1 of 7)	intron (NM_144807, intron 1 of 7)	11111.0	NR_027477	212862.0	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	4.62604979675422	4.54216319227501	4.26512886402164	4.60169742946717	4.2537795635577	4.24325132760114	4.24662681757632	4.11531421004331	-0.730788269783496	0.0589205420646431	0.25561175272088
Merged-chr18-36540747-3	chr18	36540636	36540836	+	777.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271546, exon 20 of 22)	exon (NM_001271546, exon 20 of 22)	12584.0	NM_001271545	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	3.01507984853193	3.14063508982422	3.19991359811484	3.37689978203986	3.00375004744123	3.18815200772702	3.24356058100588	3.35917406194488	-0.00103213128503557	0.998563505890292	0.999363794406303
Merged-chr14-120453790-4	chr14	120453711	120453911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_LTR|LTR|ERV1	-24650.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	5.67972450437873	5.98782528011855	6.1842299268326	5.31623559461172	6.02018016809986	6.05480548300356	6.07847858375933	5.56451915978734	0.205515945666787	0.50541507258181	0.771470037762552
Merged-chr13-112186591-3	chr13	112186489	112186689	+	807.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-101862.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	4.08117944759965	3.38357078134507	3.95970272762298	3.64795822032142	3.53012617053807	3.55507507922699	3.54698388543836	3.77328992202838	-0.564526796555886	0.275096858185491	0.586911227071458
Merged-chr10-77291269-4	chr10	77291171	77291371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_004429, exon 11 of 11)	non-coding (NR_004429, exon 11 of 11)	31971.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	5.62246187874054	5.26420662688441	5.73993333033533	5.31339032480916	5.32124268936086	5.40158051178569	5.19902255171779	5.54402423718809	-0.204245133823138	0.492532620024281	0.763574137187906
Merged-chr4-152447938-3	chr4	152447882	152448082	+	763.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010598, intron 1 of 15)	intron (NM_010598, intron 1 of 15)	873.0	NM_001252655	16498.0	Mm.388924	NM_010598	ENSMUSG00000028931	Kcnab2	F5|I2rf5|Kcnb3|kv-beta-2	potassium voltage-gated channel, shaker-related subfamily, beta member 2	protein-coding	3.47312798068457	3.53028871738219	3.77058370084439	3.61463013854055	3.11872200930465	3.53179073234026	3.34512257559472	3.47170160475496	-0.804986386794962	0.12774898917994	0.397701421485259
Merged-chr12-16588858-4	chr12	16588764	16588964	+	906.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130412, intron 1 of 20)	intron (NM_001130412, intron 1 of 20)	906.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	4.58886655516505	5.01973369247893	4.4650590890444	5.01809659331331	4.11083765571849	4.45748487316278	4.35555652442202	4.37214140069827	-1.10587551029462	0.00504640944821949	0.0478484585206894
Merged-chr13-30549022-4	chr13	30548915	30549115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3699.0	NM_025710	66694.0	Mm.181933	NM_025710	ENSMUSG00000038462	Uqcrfs1	4430402G14Rik|AI875505	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	5.74839761038266	5.95340223116537	5.69710825561787	5.95516636860158	5.8620172702535	6.06923074786903	6.01417128779599	5.89032718323703	0.159639470023379	0.519061695607358	0.77984451962357
Merged-chr6-97506480-4	chr6	97506383	97506583	+	949.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-18663.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.23946393506402	4.06483026092053	4.24012209224236	4.15506348789569	4.21876994537017	4.01433052776491	3.93195308725269	4.54485794417797	0.0708431632157658	0.866569326225232	0.950001534260153
Merged-chr11-90245825-4	chr11	90245742	90245942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3634.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	6.58523357998878	6.55303881912976	7.09269483568837	6.8052021692708	6.28442376323126	6.18219835001324	6.04255690299989	6.56598112025448	-0.719943430984156	0.00321916843623148	0.0337214407832995
Merged-chr11-73025292-4	chr11	73025206	73025406	+	685.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018883, intron 1 of 15)	intron (NM_018883, intron 1 of 15)	6298.0	NM_018883	55984.0	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	3.417919493152	3.25029419001658	3.47481122411167	3.57141465475744	3.57139406663634	3.41016500030218	3.40569409190063	3.76680186125468	0.35113576516639	0.49460878879816	0.765224301099017
Merged-chr2-165960042-4	chr2	165959998	165960198	+	759.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32539.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	3.31179724073659	3.14766279082062	3.12597032555289	3.35100570073807	3.49872561099428	3.30216705789146	3.40926565646326	3.57083165241943	0.71891829751371	0.173625231626157	0.46772742904204
Merged-chr17-26269115-2	chr17	26269015	26269215	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028190, intron 5 of 9)	B2_Mm2|SINE|B2	16205.0	NR_037905	66978.0	Mm.440216	NM_025881	ENSMUSG00000024188	Luc7l	1810045C04Rik|2410018D03Rik	Luc7-like	protein-coding	3.009556520498	3.03727268451776	2.95260036327791	2.84547555006306	2.65299484865563	2.72541833548001	2.75497808754592	3.00828435768451	-0.786139592084915	0.21716994527006	0.523995275425022
Merged-chr5-146806060-4	chr5	146805936	146806136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11080.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	7.40578685606603	7.41743466278118	7.9938337274643	7.73750494280274	7.36652813737997	7.26902317261021	7.3502384027222	7.51632695599404	-0.377836494987115	0.0640062808563072	0.268748226610458
Merged-chr11-118234647-4	chr11	118234527	118234727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	13965.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	6.02130573946273	5.55646217883895	5.89711333052942	6.10163699598813	5.56071916336707	5.66120442475399	5.70337441853787	5.84804454558254	-0.374225108230167	0.168112068896719	0.460091085512134
Merged-chr9-118858661-3	chr9	118858532	118858732	+	697.3555299999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-67904.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	3.10009189743033	2.99991325362745	3.03815139867076	3.15119781180652	3.13229465431855	3.32866678796244	3.08952811442191	3.26934694183616	0.490086558626483	0.376278749544319	0.679103048094909
Merged-chr3-65518034-4	chr3	65517933	65518133	+	961.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-10414.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	4.68022670559222	4.9831106320703	4.83249068862168	4.86305554585978	4.75914049061597	4.85497368839903	4.77354731761582	4.50645484075233	-0.244772179797525	0.469180994808494	0.748164841487415
Merged-chr1-161496415-5	chr1	161496358	161496558	+	776.58667	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183391, intron 1 of 2)	intron (NM_183391, intron 1 of 2)	1801.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	3.12434913549989	3.02992245927059	2.99127703413165	3.35674695473414	3.46138105435072	3.29766056476138	3.34315878266504	3.40671133673128	0.838240634956777	0.140326113778797	0.416507754166257
Merged-chr13-4662572-4	chr13	4662472	4662672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53408.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	6.10287076475594	6.10762309732596	6.12429817259495	5.99094484560728	6.13097758528125	6.17281661794047	6.13252350972359	6.07892467425635	0.0845974982483572	0.708978269684891	0.883216904245951
Merged-chr7-64341918-4	chr7	64341810	64342010	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	32185.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	4.63265466867883	4.07431277599956	5.27035875806982	5.16056492627311	4.75400950788378	4.97197995033393	5.01476982518376	4.93777183772792	0.0970238234423263	0.822219182552673	0.932100707060533
Merged-chr9-80164977-4	chr9	80164911	80165111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039546)	promoter-TSS (NM_001039546)	-23.0	NM_001039546	17920.0	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	7.75411618347692	7.84404134747026	7.46109317406112	7.68199557595668	8.18733995240108	8.3361313922413	8.34156520861017	8.13505800470152	0.71773557722409	2.38295311751217e-05	0.000594727278931973
Merged-chr14-120394978-4	chr14	120394856	120395056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360379, intron 5 of 6)	intron (NM_001360379, intron 5 of 6)	-83505.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	5.44806422621838	5.79121281619648	6.04112739747689	6.00605126390268	5.86523862345496	5.56452308578867	5.97040052674333	5.62088300952861	-0.130519427519923	0.641950680930475	0.848942478175454
Merged-chr5-96222113-4	chr5	96221925	96222125	+	998.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039084, intron 2 of 6)	MLT1H|LTR|ERVL-MaLR	11910.0	NM_053158	94061.0	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	4.45251486083616	4.85022617564802	5.05571139978164	4.89924748474198	4.40967807685406	4.72362027043553	4.65167594969335	5.11062767533913	-0.192858469209914	0.612212566274487	0.832680684364583
Merged-chr9-113745585-4	chr9	113745480	113745680	+	855.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 1 of 39)	intron (NM_001114347, intron 1 of 39)	4107.0	NM_001114347	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	4.36983596063625	4.07111185704172	4.10852452906369	4.61450865373715	4.05847639503594	4.18339239392295	3.88384681643031	4.19939457645018	-0.607930862289907	0.161319406810535	0.450029320380696
Merged-chr2-160622086-4	chr2	160621985	160622185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23812.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	5.98395692594938	5.88444234729741	6.7073508280259	6.76465399703556	6.12362945803633	6.1857330383549	5.95440822097713	5.9807370252186	-0.521280193907094	0.0776912966792607	0.301411064824391
Merged-chr16-70414917-4	chr16	70414821	70415021	+	623.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 3 of 15)	MER34A|LTR|ERV1	100972.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	3.43370472263035	3.51721705096977	3.60526349720174	3.4574397749342	3.74372697126812	3.48690469709253	3.42181590287614	4.04837851741775	0.624804761873551	0.21595960992441	0.522387992755032
Merged-chr11-79891288-3	chr11	79891222	79891422	+	914.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71065.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	3.68313091908573	3.49312564378645	3.86768016003739	4.03654179522256	3.20268872945572	3.25224998002207	3.2700840702462	3.63103684706301	-1.50621593845562	0.00663472350199462	0.0584761000679142
Merged-chr6-125328480-4	chr6	125328378	125328578	+	775.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011324, intron 1 of 11)	intron (NM_011324, intron 1 of 11)	7138.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	4.32816694859142	4.10444697817409	4.55544184015134	3.67584428418108	4.07822782833274	4.27902191897119	4.13336800588144	4.28403845698825	0.0021689575180379	0.996248023696773	0.998602617451138
Merged-chr7-88207612-4	chr7	88207504	88207704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70481.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.13879809078117	5.99718982758933	6.70235695250015	6.71022060891153	6.49475726243053	6.04082492864567	6.04459334751419	5.95667838551477	-0.408783068100453	0.154556269578912	0.439801241388062
Merged-chr12-30578254-4	chr12	30578161	30578361	+	928.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6182.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	3.9581241106882	4.0043220217447	4.39057196388861	4.37536113173571	4.36357991279955	4.47762828900692	4.52207231403149	4.16592382210966	0.429647343797649	0.2980974613079	0.610270372983396
Merged-chr5-111176729-3	chr5	111176607	111176807	+	970.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	-153990.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	4.88876552578007	4.80298932366346	5.1055961053733	5.05866628327971	3.43631508462688	3.56158559526618	3.57800815126403	3.73350857098757	-4.33736042529554	6.22214048372655e-13	6.92008964829957e-11
Merged-chr17-46747426-4	chr17	46747327	46747527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001305988, exon 2 of 5)	exon (NM_001305988, exon 2 of 5)	4787.0	NM_001305989	72029.0	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	6.29755565198453	6.07583859623632	6.22967007763566	5.91495192453432	5.63295281653497	6.03710699535841	5.83104891920925	5.43894633033028	-0.606163634420359	0.0249364747039581	0.148181931646079
Merged-chr14-10430825-4	chr14	10430724	10430924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	22634.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	6.85597366709241	6.25530623522171	6.18829203024511	6.82471261190639	6.725992323083	6.83725001496337	6.79622317757033	6.71547823710062	0.26913451281962	0.273894451784182	0.585609719850599
Merged-chr2-132107205-4	chr2	132107130	132107330	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	37878.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	5.54572067148345	5.67341240117834	5.69827956555988	5.99527937618519	5.45216783210884	5.2078558924051	5.18919977203383	5.56937178553518	-0.671467087065637	0.0214035890638332	0.133932840964798
Merged-chr10-81320745-4	chr10	81320617	81320817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027381)	promoter-TSS (NM_027381)	-386.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	8.8454632173685	9.10306055615589	8.91747687622618	8.93683971892251	9.08625174809329	9.2632021211831	9.35573115325205	9.11558878569954	0.313227705387556	0.0365432253583535	0.190236980749085
Merged-chr4-133804619-4	chr4	133804514	133804714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51003.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	6.54976168799787	6.72393308218803	6.75123551364306	6.51495877694852	6.94627759114352	6.82341278811648	6.70262693494298	6.61119157448437	0.21817996468987	0.29730669410886	0.60941334041274
Merged-chr2-84715333-4	chr2	84715233	84715433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144887)	promoter-TSS (NM_144887)	-169.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	8.71409488367884	8.72418976737836	8.61038774780426	8.64738882689046	8.68213611518467	8.55796613613322	8.71703254948616	8.25391083183064	-0.133460593939575	0.415595718001514	0.70983557161851
Merged-chr2-90575822-4	chr2	90575698	90575898	+	835.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	4849.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.54208979470383	3.66586718064225	3.54259157145637	3.05311735521892	4.00150552514524	3.6049025351986	3.29478809773956	3.3045374210096	0.393923221598743	0.501027214606449	0.769095113768232
Merged-chr2-98662633-4	chr2	98662528	98662728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SYNREP_MM|Satellite|Satellite	1194971.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	10.3608320765931	9.66373569951978	10.9139118720849	9.70492078300588	10.5337444757429	10.6384367935475	10.1436495678079	11.616526666253	0.709698387914749	0.172745121840154	0.466369240563639
Merged-chr15-99094067-3	chr15	99093953	99094153	+	815.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5431.0	NM_176835	72778.0	Mm.30544	NM_176835	ENSMUSG00000038009	Dnajc22	2810451A06Rik|AI506245	DnaJ heat shock protein family (Hsp40) member C22	protein-coding	3.11101603352827	3.25393823171277	3.59133789959068	3.12155868126331	3.32710868566269	3.4895481111489	3.71638392713845	3.7754887647308	1.04996891436258	0.0534820200145634	0.24136689487753
Merged-chr12-98831334-4	chr12	98831227	98831427	+	922.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 21 of 43)	intron (NM_001081191, intron 21 of 43)	60305.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	4.36754003968476	4.30488079600716	4.17421859715577	4.32727518652321	4.61346557205572	4.62817843386558	4.88535502145369	4.36549350217427	0.764536767870053	0.0406853005248576	0.203888823550815
Merged-chr3-146583687-3	chr3	146583579	146583779	+	684.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019957, intron 6 of 6)	intron (NM_019957, intron 6 of 6)	-13470.0	NM_009474	22262.0	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	4.02157924298285	3.72991414291604	4.0222100690852	3.61137633758607	3.65915761398743	3.84597502901574	3.95963260423593	3.8802604288	-0.0249370431876935	0.957367943620823	0.984815156534365
Merged-chr16-95955897-4	chr16	95955794	95955994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26817.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	7.67593424558206	7.63673189319716	8.12504021842889	8.08258795816449	7.85673339387583	7.54679550465966	8.0127484584134	7.86190772681284	-0.093282322234278	0.642760722650376	0.84935096784468
Merged-chr8-25627418-4	chr8	25627315	25627515	+	663.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001735, intron 1 of 9)	B3|SINE|B2	-13162.0	NM_001081269	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	3.57927080625777	3.29729299926094	3.4092490535261	3.41909741842432	3.74316673872536	3.64180338796604	3.56533105960372	3.7744185870921	0.832042411828168	0.0845383455852465	0.31638650299239
Merged-chr4-129500921-4	chr4	129500821	129501021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	9731.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	7.27852878332817	7.90364806243448	7.39430276282252	6.55975280924522	7.53164629817898	7.72148566985113	7.71695469622045	7.25271647647281	0.268173804865314	0.339389134049012	0.648737202156065
Merged-chr10-78464044-3	chr10	78463958	78464158	+	904.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172134, intron 1 of 10)	intron (NM_172134, intron 1 of 10)	890.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	4.13151676976481	3.576191017368	3.91523280993957	3.88574592710094	3.61427580824786	3.58474934341088	3.74941378861176	4.08904350318053	-0.334445148355926	0.494291632685106	0.764997511270898
Merged-chr5-74944250-4	chr5	74944154	74944354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4940.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	6.73738411275724	6.75321770219016	6.72373460873308	7.20686511597494	6.71574614830894	6.69095835301407	6.97986932849254	6.60997482082304	-0.189108516169084	0.407028397428776	0.703457348417477
Merged-chr13-63563922-4	chr13	63563813	63564013	+	843.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001328514, intron 1 of 23)	CpG-3956	1822.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	3.70469105585029	3.74186131138299	3.70520244500603	3.64980336697217	3.92543122395556	3.59066556150084	3.88282569500266	3.64949144724951	0.242587599466888	0.599048058655795	0.826146116839364
Merged-chr8-83244292-4	chr8	83244176	83244376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111304, intron 9 of 20)	intron (NM_001111304, intron 9 of 20)	-46072.0	NM_009463	22227.0	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	6.03590934136847	5.66825233532086	5.92587408506249	6.1883798918389	6.24685711932314	6.03107675414642	6.28878186218125	5.9216581758322	0.240677075316913	0.352465875932979	0.659568292805988
Merged-chr11-53233745-2	chr11	53233645	53233845	+	843.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66734.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	2.72731339924646	2.84675959891958	2.93742212068011	3.00419066949634	2.9746501539275	3.17224599726663	3.0494098239616	3.37086044768019	1.0425743932916	0.0876343749267241	0.322830306019527
Merged-chr6-146676422-3	chr6	146676323	146676523	+	867.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19205.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	4.30696212360503	3.9686305978395	4.26626767264389	4.26145283619909	4.45708959504184	4.0540883381772	3.80386072795551	4.08331968890066	-0.183012355348573	0.679611297858067	0.868562901473288
Merged-chr2-30587403-4	chr2	30587319	30587519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7625.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	5.73570627454839	6.25971812375332	5.6860852749564	5.54829525212731	5.89048063208996	5.88702383292945	5.52209135257374	5.42580877812155	-0.21254635069821	0.485568004342746	0.75937612561217
Merged-chr12-102455879-4	chr12	102455771	102455971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13263.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	5.47520267705269	5.13115193947441	5.87951471185973	6.07977242325615	5.8913762554024	5.7757536914356	6.35212503253593	6.30112026041192	0.627302606495674	0.0560748865928481	0.247864446578555
Merged-chr7-80261213-4	chr7	80261124	80261324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028053)	promoter-TSS (NR_028053)	9.0	NM_031375	83485.0	Mm.21175	NM_031375	ENSMUSG00000047084	Ngrn	AW552001	neugrin, neurite outgrowth associated	protein-coding	5.54381107334709	5.23410517656379	5.09551620307057	5.37972329065081	5.68492454030438	5.84678354463381	5.61997601999936	5.89251513290301	0.739745398450141	0.00765001931998045	0.0650873446302759
Merged-chr9-94665421-4	chr9	94665321	94665521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4471.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	6.29686737706744	5.52468846695517	6.22716445656128	6.24002031187646	6.02718319621231	6.09524420181449	6.04108546519747	5.71359880324273	-0.205198753476801	0.466335329724595	0.746420287776482
Merged-chr15-8706491-3	chr15	8706393	8706593	+	763.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 2 of 9)	intron (NM_148938, intron 2 of 9)	4314.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	2.87380068889356	3.09770912324381	3.14977768337003	3.00558908059474	3.2413366011029	3.6919159044687	3.25599230540558	3.32293422363033	1.31351876942074	0.0200809126744216	0.128387611897301
Merged-chr14-14702823-4	chr14	14702736	14702936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360516)	promoter-TSS (NM_001360516)	-189.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	8.65508063593606	8.47099981239082	8.62045806309721	8.5939076527149	8.76053914509946	8.60076991550885	8.9825041708558	8.61037630781905	0.204543164305044	0.20068504810303	0.502868627315772
Merged-chr1-172083286-2	chr1	172083142	172083342	+	695.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021607)	promoter-TSS (NM_021607)	-493.0	NM_021607	59287.0	Mm.218203	NM_021607	ENSMUSG00000003458	Ncstn	9430068N19Rik|AA727311|Aph2|D1Dau13e|Kiaa0253|Nct|mKIAA0253	nicastrin	protein-coding	3.09792122480935	3.00624668699774	3.40508474363402	2.90113087818046	3.72034904129739	3.57688559314001	3.2780496180726	3.50807656370331	1.56129448518542	0.00534618772581644	0.0499522573032146
Merged-chr3-95141639-4	chr3	95141538	95141738	+	944.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027206, intron 1 of 1)	intron (NM_027206, intron 1 of 1)	722.0	NM_027206	69769.0	Mm.34368	NM_027206	ENSMUSG00000013707	Tnfaip8l2	1810019A08Rik|AW610835|TIPE2	tumor necrosis factor, alpha-induced protein 8-like 2	protein-coding	4.68409273592557	4.37715301471473	4.46130909822279	4.57169084351359	4.00646828037377	4.15558186023437	4.35731471564079	4.57502765194613	-0.578900641563113	0.148762481833404	0.430682693175785
Merged-chr2-156434496-4	chr2	156434386	156434586	+	891.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013510, intron 1 of 21)	MTC|LTR|ERVL-MaLR	13577.0	NM_001291123	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	4.33862427294711	4.96636345152203	4.95924653686595	4.60053812156145	4.26951002794532	4.02566053539207	4.32013248586944	4.42711746254996	-1.07232610782588	0.00883255366853981	0.0721602150878911
Merged-chr2-33736936-3	chr2	33736831	33737031	+	916.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 9 of 9)	intron (NM_175184, intron 9 of 9)	-68885.0	NR_045729	320482.0	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	3.42288397211802	3.53806349676906	3.30005902494293	3.2894372689412	3.27210509350871	3.85656432238045	3.67238482407685	3.58694197756751	0.720364511077363	0.166417844892081	0.457724633160998
Merged-chr17-79355715-4	chr17	79355560	79355760	+	869.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026514)	promoter-TSS (NM_026514)	-569.0	NM_026514	260409.0	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	3.80613813846472	3.86747576748073	3.80667809728622	3.72313718906601	3.92598128224705	3.70402088321047	3.74033688149362	3.85381642187801	0.0552105219374841	0.901501074846829	0.963395865335291
Merged-chr13-20208279-4	chr13	20208182	20208382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 3 of 21)	intron (NM_080288, intron 3 of 21)	117775.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	7.23228908831699	6.82213329889819	7.43316456891426	7.34143342538582	7.17458274935072	7.07873526015885	7.20808362249503	7.36174705669678	-0.0268071817427731	0.898003608369774	0.961940146282087
Merged-chr7-104300116-3	chr7	104300009	104300209	+	896.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023835, exon 8 of 8)	3' UTR (NM_023835, exon 8 of 8)	-12003.0	NM_001310602	667823.0	Mm.482375	NM_001310602	ENSMUSG00000060441	Trim5	EG667823|Gm8833	tripartite motif-containing 5	protein-coding	2.64561908504075	2.58011530622594	2.64585951147987	2.20869252565753	3.44271304629479	3.57469671593046	3.52778951181256	3.83711992336877	7.50907772018688	4.97287168554547e-14	6.90448105536099e-12
Merged-chr10-121291850-1	chr10	121291750	121291950	+	702.0	f0_balb.idr	intron (NM_001361015, intron 8 of 12)	intron (NM_001361015, intron 8 of 12)	19546.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	2.59195959762405	2.74083394116019	2.59228729438355	2.77778575338833	2.45237968850504	2.26351634246875	2.38964122634184	2.24622409473216	-2.03037856436042	0.0123782629491251	0.0917783727558101
Merged-chr16-31948435-6	chr16	31948304	31948504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026554)	promoter-TSS (NM_026554)	117.0	NR_027897	106264.0	Mm.347369	NM_025320	ENSMUSG00000107002	0610012G03Rik	AI839730	RIKEN cDNA 0610012G03 gene	ncRNA	6.11833760309438	6.09484975316326	5.78681275386775	5.94651129720626	6.43368517090905	6.7738407177123	6.18795155368493	6.29037220520677	0.677594593300119	0.00615528188165913	0.0552752531151469
Merged-chr13-110541884-4	chr13	110541785	110541985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	146841.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	6.02054761408519	6.4708821000363	6.34565930474403	6.31403819811503	6.28944626925454	6.68701846520996	6.16228339829363	6.08466790731059	0.033022060025576	0.894941851195033	0.960713450158526
Merged-chr6-72538903-4	chr6	72538806	72539006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5485.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	6.12955344759531	5.95972766603924	6.31641133133035	6.49384346815431	6.56975696621043	6.68817114217788	7.12728773822203	6.5712606882541	0.734061369380674	0.00390870990795404	0.03936305355663
Merged-chr9-31018367-4	chr9	31018246	31018446	+	946.645874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-12298.0	NM_001115130	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	4.25743311088266	4.59958218023193	4.568844452583	4.21520346491499	4.48771134383203	4.5307511113553	4.72897490330999	4.7143591583302	0.463989908818135	0.213865962483743	0.519418016486679
Merged-chr9-90255989-3	chr9	90255925	90256125	+	958.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	14744.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	3.39676088832009	3.23260814362901	3.65482179479348	3.60711684313713	3.4126835511735	3.38865969554498	3.54383767823873	3.39544760486806	-0.180414277322378	0.728436846556682	0.891986758551096
Merged-chr16-36934356-4	chr16	36934287	36934487	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008225)	promoter-TSS (NM_008225)	-596.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	4.59692107698198	4.8081186004518	4.08347091680573	3.96170773275287	4.7210942583931	4.76983859016633	4.45556437496217	4.55545206437457	0.509172126489094	0.235503811913674	0.545490589918757
Merged-chr9-63975511-3	chr9	63975401	63975601	+	997.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	46558.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	4.73394344129926	4.45459538457788	5.20213126268094	4.82873654622004	4.07090811920614	4.17912718795998	4.52250233688677	4.31702048684362	-1.24934482594203	0.00224729318016042	0.025583050568581
Merged-chr3-51209978-4	chr3	51209887	51210087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-14460.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	7.68718325819587	7.39174391583702	7.59888645443178	7.57249931936428	7.19400856122548	7.31161811826059	7.42841378784843	7.27856154400378	-0.351885111871692	0.0495765932922601	0.230581046389818
Merged-chr12-31917517-4	chr12	31917428	31917628	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163126, intron 19 of 22)	intron (NM_001163126, intron 19 of 22)	32717.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	4.4259814568358	4.24453253265284	4.98765839384339	4.53806231108902	4.34499266386939	4.85487647553377	4.65894148704306	5.07144558309348	0.381392088244901	0.351183401975109	0.658644512922243
Merged-chr17-17590633-3	chr17	17590529	17590729	+	639.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	L1MEf|LINE|L1	33860.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	3.09046786018419	3.65435445553898	3.68355513164643	3.2613540973181	3.52074240813376	3.53571362767288	3.51767991867138	3.63283163381803	0.363925356108594	0.499538070156359	0.768387448003553
Merged-chr16-58481922-4	chr16	58481788	58481988	+	837.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	41538.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	3.77900363052945	3.62624062277879	3.68029211325674	3.1566740248653	3.74070317599793	3.74661973907196	3.55866335613518	3.67813275422435	0.360431344471893	0.487791512207988	0.761057402147961
Merged-chr2-120348324-4	chr2	120348206	120348406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147153, intron 2 of 25)	intron (NM_147153, intron 2 of 25)	4827.0	NR_027618	269338.0	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	6.46798675310771	6.33745991423963	6.15344121147067	6.74145927406256	6.37389707851228	6.17509513721603	6.24201129677647	6.36196518201243	-0.248880378651771	0.303990891410308	0.616696040763071
Merged-chr7-97809525-4	chr7	97809430	97809630	+	891.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357364, intron 1 of 14)	MIRb|SINE|MIR	20989.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	4.5701846122387	4.20505671736277	4.52625725755504	4.72505032297357	4.95978197413735	4.46448208055229	4.89166681569426	5.57391149316033	1.02958797469694	0.0130995514767971	0.0955098225617526
Merged-chr15-76381020-4	chr15	76380986	76381186	+	860.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175457, intron 1 of 43)	CpG	573.0	NM_175457	223658.0	Mm.123240	NM_175457	ENSMUSG00000022558	Mroh1	D330001F17Rik|Heatr7a	maestro heat-like repeat family member 1	protein-coding	4.60500954615545	4.26725398686926	4.15970350400544	4.11599352746411	4.31414755732855	4.18391543880236	4.04224887548426	4.45828192847402	-0.0723148799205781	0.861217897820636	0.947574515069552
Merged-chr9-96196951-3	chr9	96196870	96197070	+	856.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178667, intron 1 of 13)	intron (NM_178667, intron 1 of 13)	695.0	NM_001184708	211586.0	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	3.06100825341771	3.12438606817746	3.29733359666114	3.02381811107375	3.01957281562687	3.17241111418434	3.17265471915267	3.49414019196454	0.375473980858798	0.507864612704328	0.773126660502261
Merged-chr7-110382497-4	chr7	110382394	110382594	+	854.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 17 of 40)	RMER10B|LTR|ERVL	160791.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	3.48435810338126	3.51928869597448	3.80258380510978	3.70225619029339	3.71207105496037	3.59978919748341	3.63884424227525	3.80027579901216	0.166105060680045	0.726243166416834	0.891034932051019
Merged-chr1-171281793-4	chr1	171281695	171281895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008911)	promoter-TSS (NM_008911)	-609.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	5.41928024984414	5.27557343567534	5.55985627880064	5.24490963696969	5.59318429546613	5.68015586043984	5.65663988699633	5.65739228202572	0.481744198625237	0.0739442299470035	0.292989246476768
Merged-chr15-102377155-7	chr15	102377037	102377237	+	915.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10169.0	NM_001348205	170574.0	Mm.263284	NM_130458	ENSMUSG00000060284	Sp7	6430578P22Rik|C22|Osx	Sp7 transcription factor 7	protein-coding	3.19371206705683	3.28607496221208	3.31130938214414	3.03205946525498	3.18698414846379	3.42528707498707	3.29830093687865	3.36423471349544	0.436018183627677	0.417007916370886	0.710780806498163
Merged-chr13-111807661-1	chr13	111807561	111807761	+	1000.0	f1_balb.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	1332.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	4.25059560054777	3.95595332557704	4.12285873189363	4.0564010943831	4.33306851816533	3.99641786155048	3.91278747267145	3.87300354700253	-0.10566429428779	0.808501130035061	0.926092305157072
Merged-chr12-8496883-17	chr12	8496806	8497006	+	933.397034	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007483)	TTS (NM_007483)	3103.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	4.23831073337867	4.43685369923242	4.28981646889896	4.83232459737796	4.70531049093805	4.88261800466003	4.36689839590377	4.77942853060022	0.435392444696241	0.283632367364674	0.595722718088449
Merged-chr17-34101858-4	chr17	34101719	34101919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6510.0	NR_046183	414076.0	Mm.473092	NR_046183	ENSMUSG00000098197	BC051537	-	cDNA sequence BC051537	ncRNA	5.53841414425663	5.75429130760086	5.59964898228594	5.35905061701101	6.17594019320469	6.68168600479913	6.03318917197827	6.414709548204	1.23987572228123	4.05600973873058e-06	0.00012332452678048
Merged-chr7-100434382-4	chr7	100434259	100434459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 23 of 32)	intron (NM_001017985, intron 23 of 32)	-38632.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	5.961378434283	5.9931567881864	5.82942411958599	5.46830935550287	5.90847701535567	6.02694488788115	5.57114027095107	5.59534131371345	-0.03524293461207	0.901747697884672	0.963514762035143
Merged-chr7-6156183-4	chr7	6156074	6156274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013012)	promoter-TSS (NM_001013012)	-203.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	8.17387447943756	8.20407125135876	8.60215112207751	8.29128148932883	7.94054287214255	8.17523640384528	8.39036495497619	8.28119688061424	-0.158177860242015	0.389403185235963	0.689708844201125
Merged-chr8-117256579-4	chr8	117256450	117256650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163262)	promoter-TSS (NM_001163262)	-469.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	8.43805668792794	8.74439516269583	8.77410709340559	8.49758941291804	8.47143537430994	8.84728198639716	8.71819766086641	8.61925809379776	0.0601363478502664	0.721400956585143	0.888753092785481
Merged-chr19-36554082-3	chr19	36553993	36554193	+	795.1777950000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172637)	promoter-TSS (NM_172637)	-546.0	NM_001163471	226098.0	Mm.61107	NM_172637	ENSMUSG00000041180	Hectd2	4921524L07|A630025O09Rik|AW212605	HECT domain E3 ubiquitin protein ligase 2	protein-coding	3.43735722503454	3.30575692966097	3.38574952333392	3.30762671059078	3.1050530060348	3.12861648793138	3.26249613046153	3.3838329428094	-0.503781203322239	0.349597671145213	0.657107730186831
Merged-chr1-120504859-4	chr1	120504769	120504969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010766, exon 1 of 17)	5' UTR (NM_010766, exon 1 of 17)	155.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	5.27690290564626	5.09876037448863	5.46369410557593	5.66717860030654	5.7729115248723	5.74814519379118	5.67079724110098	5.64701906670529	0.505289250042508	0.0814603590666449	0.309632966036617
Merged-chr10-42679460-2	chr10	42679360	42679560	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172416, intron 1 of 5)	intron (NM_172416, intron 1 of 5)	544.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	3.67183293821115	3.28797877956044	3.45886589894592	3.61222349017977	3.55576458857328	3.51428497499687	3.32617069567051	3.89412589901623	0.222994387179641	0.66946878411632	0.863500911518511
Merged-chr12-100878854-3	chr12	100878758	100878958	+	981.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001177673, exon 3 of 3)	exon (NM_001177673, exon 3 of 3)	20666.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	3.93116579542211	4.5033516120132	4.95713778948385	4.41319701770292	4.16592900645391	4.05757337362207	4.59559242861721	4.09815982722304	-0.585827862651619	0.206902631480613	0.51093263968077
Merged-chr12-85490581-4	chr12	85490490	85490690	+	991.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16700.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	5.33098484809616	5.34045228814021	4.98591487524346	5.58663419669333	5.4929591502292	5.70072676911298	5.59941457435159	5.02160515293549	0.232406990589615	0.472911193974025	0.750916766142663
Merged-chr3-151746205-2	chr3	151746098	151746298	+	892.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_133871, intron 3 of 7)	ORR1E|LTR|ERVL-MaLR	3761.0	NM_133871	99899.0	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	3.02484537230696	2.8645525484701	2.86354050360899	2.62873184253761	3.90791639156404	3.81444305425284	4.06974284851383	3.4796633871741	4.01395106444199	8.54032142793243e-11	6.60751672737828e-09
Merged-chr14-29968321-4	chr14	29968238	29968438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019979)	promoter-TSS (NM_019979)	-42.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	8.30662614919588	8.49508326355318	8.19586542793249	8.20389419860407	8.51532289882413	8.56237006711088	8.40749500694361	8.56599953922292	0.265347727269109	0.0916879812788413	0.33099654204223
Merged-chr15-61984480-4	chr15	61984388	61984588	+	929.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010849)	promoter-TSS (NM_010849)	-853.0	NM_001177354	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	4.71219526936701	4.8207583834729	5.00191812468806	4.38447504276404	4.45067503083182	4.36654824677844	4.31886104730846	4.47239404938506	-0.735632468618746	0.0582871920373795	0.253797274241673
Merged-chr15-59653899-3	chr15	59653762	59653962	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144549, intron 2 of 2)	intron (NM_144549, intron 2 of 2)	5208.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	2.84521807857629	3.26786690107565	2.84557807621208	2.61636535698821	2.64530568835006	2.75043686951702	2.63596558988831	2.90508782073342	-0.816524305530743	0.233979337655088	0.543675620244558
Merged-chr9-63794293-1	chr9	63794193	63794393	+	676.0	f0_balb.idr	Intergenic	Intergenic	-36299.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	2.78188924550506	2.68396961403144	2.89367429348028	3.04937432523139	2.53637345826454	2.39382727396988	2.51841839461246	2.45146446195852	-2.1567463301395	0.00494331224281798	0.0471662228058366
Merged-chr6-97853659-3	chr6	97853546	97853746	+	835.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	46588.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	3.84965030652655	3.60343490046744	4.39039962193554	3.47599364457476	3.69917222332572	3.36807129665563	3.62681251310733	3.74773871513017	-0.751696409410141	0.17284162569713	0.466541299791279
Merged-chr12-86726441-4	chr12	86726339	86726539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144524)	promoter-TSS (NM_144524)	21.0	NM_144524	68737.0	Mm.63979	NM_144524	ENSMUSG00000021257	Angel1	1110030H02Rik|mKIAA0759	angel homolog 1	protein-coding	7.20951560040356	7.24667880893928	7.59193705150329	7.03504296416915	7.20381236159151	7.10130109554396	7.44411040353482	7.4393962712503	0.0378432269884442	0.856312324124889	0.945893027699269
Merged-chr3-96261778-2	chr3	96261730	96261930	+	644.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1487.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	2.78221926288846	2.8545892795543	2.64458452229281	2.4627839033275	2.95747024297166	3.01792324660126	2.89625808955612	2.90596766367966	1.21815443867621	0.0567792750223314	0.249628907771126
Merged-chr2-117996340-4	chr2	117996231	117996431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	114871.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	6.00587029397916	6.13548620725247	6.2429572873097	5.82110478379726	6.08268087700745	6.06996780032921	5.76611680953809	6.00264376698507	-0.0895771339171303	0.722646826980242	0.88928160490736
Merged-chr16-4723587-6	chr16	4723491	4723691	+	818.277771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2770.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	3.81385059832185	3.37856137971341	3.99048254968177	3.67723636341737	3.74796309068678	3.41314255755754	3.59571492758761	3.76400458237149	-0.263926989096529	0.604789283166826	0.828552936841395
Merged-chr2-119156553-1	chr2	119156453	119156653	+	540.0	f0_balb.idr	intron (NM_001033136, intron 1 of 12)	CpG	481.0	NM_001033136	67809.0	Mm.475909	NM_001033136	ENSMUSG00000070730	Rmdn3	1200015F23Rik|AI131757|Fam82a2|Ptpip51|RMD-3|Rmd3	regulator of microtubule dynamics 3	protein-coding	3.66048665878049	3.47947362156126	4.22052363868572	3.74101535051949	3.76803997234955	3.89418565694902	3.70334378656942	4.17949212325014	0.273486140221805	0.584697642114413	0.817725463637045
Merged-chr5-112153960-3	chr5	112153890	112154090	+	688.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-52773.0	NR_045377	75569.0	Mm.243721	NR_045377	ENSMUSG00000101683	1700028D13Rik	-	RIKEN cDNA 1700028D13 gene	ncRNA	3.24717212194667	3.27987156419299	2.91678526912945	3.04869001722869	3.49083431328613	3.36075355660741	3.17627258015184	3.509301453998	0.974069835931139	0.0789856559630517	0.304143905332072
Merged-chr17-32350671-4	chr17	32350569	32350769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017476)	promoter-TSS (NM_017476)	-92.0	NM_017476	54194.0	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	8.34231557417834	8.35713831494569	8.12832464216842	8.35093395115741	8.29905757351861	8.19995067917142	8.22763510595586	8.03753939329616	-0.131970407721276	0.40764310632022	0.703857141814714
Merged-chr2-30407396-4	chr2	30407293	30407493	+	994.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007760, intron 6 of 13)	intron (NM_007760, intron 6 of 13)	8355.0	NM_007760	12908.0	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	5.25126717230456	5.50401657450122	5.31566490402795	5.38164255743251	5.48010019101182	5.18200331636347	5.46154903906248	5.72958672243323	0.193485548955428	0.502046261395393	0.769457185302407
Merged-chr18-75696998-4	chr18	75696931	75697131	+	962.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 1 of 11)	CpG	665.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	4.60590661003147	4.89370373671838	5.29983784191121	4.96574136153957	4.89926800995588	5.03189136022903	4.75610622294771	5.26916702464571	0.0705113449174483	0.840214073135129	0.939246749249071
Merged-chr14-7987103-4	chr14	7987004	7987204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007870, intron 2 of 7)	intron (NM_007870, intron 2 of 7)	7078.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	6.59725585649211	6.3861219687071	6.70281621138864	6.49835269961539	6.88707470231129	6.47916620514664	6.34536341697557	6.51348069604044	0.0583669037319477	0.800878765500609	0.923245260282665
Merged-chr9-54560241-4	chr9	54560121	54560321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019686)	promoter-TSS (NM_019686)	-142.0	NM_019686	56506.0	Mm.42192	NM_019686	ENSMUSG00000037493	Cib2	2810434I23Rik|AI449053	calcium and integrin binding family member 2	protein-coding	7.5807782254571	7.3918838975438	7.54734702878224	7.76567440903567	7.31694375144595	7.0407564409653	7.49248007417265	7.33183993861268	-0.370497770446493	0.0556142399521727	0.246839557620234
Merged-chr13-22041005-1	chr13	22040905	22041105	+	1000.0	f0_balb.idr	TTS (NM_175656)	TTS (NM_175656)	357.0	NM_175656	319158.0	Mm.14775	NM_175656	ENSMUSG00000060639	Hist1h4i	-	histone cluster 1, H4i	protein-coding	5.34435796997094	5.40708418324231	4.76775447539606	4.92842612780836	4.78920497720375	5.10602776282538	5.04716564842847	5.4708641270771	-0.0265117913480746	0.940749413474493	0.978654793543509
Merged-chr10-4096492-3	chr10	4096409	4096609	+	703.849976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 24 of 27)	ID4|SINE|ID	116611.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	3.19615552001115	3.32012830720953	3.80246199127513	3.47320842642957	2.8692134376914	2.96995061691347	2.9251695879191	2.93247917902478	-2.32635922083586	0.000360115624011314	0.00589121351447973
Merged-chr15-100677947-4	chr15	100677824	100678024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 6 of 7)	intron (NM_033612, intron 6 of 7)	-8424.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	5.86265482941676	5.85256488358087	5.91081480687928	6.01535441267225	6.09506368568088	5.96588494526134	6.16767760095173	6.11925363191694	0.266279895332539	0.258465381965339	0.570369121898476
Merged-chr12-33083608-4	chr12	33083516	33083716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024478, intron 2 of 19)	intron (NM_001024478, intron 2 of 19)	9259.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	5.92220280625635	5.64402682874679	5.94383003182293	5.83410865710354	5.59203612116905	5.65137519080193	5.58805345120118	5.44190122834175	-0.446910692210624	0.0860011138570403	0.319577250946843
Merged-chr6-134543310-2	chr6	134543210	134543410	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	23603.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	2.90248776193135	2.74623100230842	2.62005720589785	2.42675679033594	2.95022797867801	3.07861061810432	3.12239649138673	3.23690947653063	1.9626300626778	0.00273419567847088	0.0296853743437887
Merged-chr7-100429328-3	chr7	100429247	100429447	+	917.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 20 of 32)	MER90|LTR|ERV1	-43644.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	3.38582430610196	3.93830277642175	3.6809384683764	3.67625833372847	3.98805562603336	3.56555571872465	3.55751462053964	3.7801655656267	0.170673042884134	0.735294100988673	0.895484700651417
Merged-chr1-17608124-2	chr1	17608024	17608224	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053191, intron 2 of 5)	intron (NM_053191, intron 2 of 5)	6223.0	NM_053191	94227.0	Mm.442452	NM_053191	ENSMUSG00000067780	Pi15	P24TI|P25TI|PI-15|SugarCrisp	peptidase inhibitor 15	protein-coding	2.85700196213745	2.81496094837143	2.97511171413793	2.67122837985937	2.77207420677936	2.96568480050117	2.78483804445845	2.79289184116446	0.0159600583594654	0.979497912755361	0.99269129061727
Merged-chr11-107189348-4	chr11	107189240	107189440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161329)	promoter-TSS (NM_001161329)	41.0	NM_133702	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	7.26588345312818	7.33283418336862	6.45555169204114	6.71604812125759	7.48352072888611	7.61989551228098	7.0266048855892	7.48273392690877	0.584093016823467	0.0235420048313588	0.142503304863619
Merged-chr19-55544604-4	chr19	55544514	55544714	+	936.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	L1MB8|LINE|L1	157590.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	5.00700119614259	5.09984652078526	5.16240945872983	5.12298643012627	4.84153705086549	4.62061804654996	4.69130702026885	4.790127435641	-0.714251458261386	0.0268544584789126	0.155780738349564
Merged-chr4-105561003-4	chr4	105560900	105561100	+	910.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	403653.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.36503567850326	4.25196895860856	4.19158351797704	4.20191455363781	4.25630532221228	4.31762749517709	4.42362664604463	3.93260588604909	-0.0121287580214664	0.975893932837987	0.991400325425142
Merged-chr9-110711576-4	chr9	110711473	110711673	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028312)	TTS (NM_028312)	31037.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	3.9212641592381	4.22199269598466	4.25767881472242	3.92055275806178	4.3204638001345	4.15094701598242	3.95930089575844	4.33654700076347	0.317129412719542	0.451607695902013	0.736155915050826
Merged-chr1-88279392-5	chr1	88279195	88279395	+	752.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1716.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	3.48001564785374	3.49399729110616	3.58647744912621	3.47926107480374	3.40714452212573	3.28157017069812	3.52039572690414	3.6820297293803	-0.0940718484512165	0.851383961736881	0.94395961613626
Merged-chr16-95831741-4	chr16	95831625	95831825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040485, exon 4 of 4)	non-coding (NR_040485, exon 4 of 4)	66988.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	7.42622787051762	7.20303482932771	7.55716467631222	7.79866484977194	7.26848939144692	7.23363381900836	7.70691051598129	7.57806948142934	-0.0838772167182704	0.698124174987703	0.878180583445566
Merged-chr13-115090201-4	chr13	115090094	115090294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134058)	promoter-TSS (NM_134058)	-36.0	NM_134058	105083.0	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota mRNA surveillance and ribosome rescue factor	protein-coding	8.17119099775676	7.99113103611728	8.20269712832697	8.2505252353749	8.42397066726251	8.33791341519617	8.3255188782167	8.03862224781712	0.169012073009418	0.314463327643516	0.626418481986394
Merged-chr1-171474443-3	chr1	171474315	171474515	+	650.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-29063.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	3.19602982716227	3.16552096934363	3.44164381966153	3.21144965536401	2.76993818126819	2.77771716816958	2.66515826093471	3.08159474033839	-1.917078440485	0.00429240593626101	0.0423766172943218
Merged-chr1-165589360-4	chr1	165589271	165589471	+	829.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45170.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	5.00909225167162	4.60227167878381	4.78497842891609	5.00691059323559	4.14949198776723	4.17525252206816	4.49054904691287	4.81640767113429	-0.949123247836962	0.0173387101591448	0.116210174238961
Merged-chr8-104602903-4	chr8	104602829	104603029	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252628, intron 17 of 17)	intron (NM_001252628, intron 17 of 17)	11461.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	6.09143446031312	5.78479544336077	5.57952835147018	5.88837999455031	5.47608119057012	5.61186854715944	5.82115314640951	5.19440842792468	-0.512553081536893	0.0755842768565653	0.296959388550724
Merged-chr15-95791743-4	chr15	95791681	95791881	+	966.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	938.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	4.30668719048314	4.77221312434929	4.21016465151564	4.03068740004676	4.63619364295035	4.65444991287375	4.42041781188698	4.43793054443713	0.4358057490975	0.288032154669434	0.599960222908101
Merged-chr6-125501414-3	chr6	125501341	125501541	+	958.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6681.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	4.51676628237294	4.17637073249103	4.14868673972907	4.32575345632636	3.68251982478578	3.88947249332818	3.98132134732527	4.67995206218747	-0.454794850694661	0.351231131312857	0.658672265005478
Merged-chr5-32139693-5	chr5	32139616	32139816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	3244.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	4.84107238310144	5.25196150383749	4.99309563112354	4.78620043444731	5.3547208382897	5.39307462708625	5.1346101870302	4.95359177768523	0.477892613685777	0.141713014155229	0.418839287836592
Merged-chr13-33072259-3	chr13	33072156	33072356	+	905.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11847.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	3.34555134831401	3.41876815172073	3.34598070376497	3.32876535288325	3.30444193502277	3.39931549762703	3.33356259057808	3.60484843337254	0.18808015823526	0.712569758547129	0.88495186291337
Merged-chr4-149773688-3	chr4	149773602	149773802	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027460, intron 1 of 6)	CpG	565.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	4.97622316740834	5.50200078434462	5.38196040975466	5.2297293722825	5.55688567783066	5.5556082149246	5.23472492710702	5.46205803666076	0.311282675902722	0.29398505117455	0.606364889537559
Merged-chr8-88293989-7	chr8	88293851	88294051	+	973.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037724)	promoter-TSS (NM_001037724)	-253.0	NM_001037724	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	4.86084750524456	4.2564252019133	4.60090071175871	4.49685184907383	4.10593500300308	4.30157961346626	4.05235734471559	4.31478462301675	-0.886347115796455	0.029240551856836	0.164465684758414
Merged-chr12-16896282-4	chr12	16896178	16896378	+	758.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	intron (NM_009072, intron 1 of 32)	1300.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	4.03662189538998	3.98858553868635	3.73065120277256	3.68464184624032	3.93445836161216	4.16112239212717	3.97357260586664	3.94053773085799	0.399203392292842	0.364051669075061	0.668959979169087
Merged-chr19-10555785-4	chr19	10555697	10555897	+	943.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277861)	promoter-TSS (NM_001277861)	-34.0	NM_001277860	68642.0	Mm.31236	NM_026798	ENSMUSG00000024667	Tmem216	1110017C22Rik|2810441K11Rik|4921533J23Rik|A930021F15Rik|AI482550	transmembrane protein 216	protein-coding	4.54464180569835	4.52989580532758	4.73914398001108	4.46475451808201	4.45315462828797	4.79867275792362	4.75154631724747	4.62342069636354	0.198407984843966	0.576720638485581	0.813717061662804
Merged-chr9-64143392-4	chr9	64143323	64143523	+	814.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026507, intron 17 of 18)	MTE2a|LTR|ERVL-MaLR	26276.0	NM_145835	235435.0	Mm.436581	NM_145835	ENSMUSG00000032401	Lctl	E130104I05Rik|KLPH	lactase-like	protein-coding	4.07283059254069	3.82582402143378	4.02596681079883	4.2395067910534	4.12698873656971	4.0988799850122	4.1447831816331	3.92322576013625	0.0419189920723245	0.921808394862952	0.970959215211546
Merged-chr6-87809320-4	chr6	87809219	87809419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	438.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	7.42901622906451	7.68448508673754	7.66923633576517	7.60096598678898	7.33318278649677	7.47408049457204	7.19371517506802	7.47295943102514	-0.306311504745374	0.0875418709115083	0.322623114301038
Merged-chr5-3493275-4	chr5	3493184	3493384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-50549.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	6.72408175085736	6.95714726076457	6.65080565178347	6.34966764212242	6.8928135497369	6.79621635763848	6.60149281152253	6.35404714002296	0.0061254965385268	0.979948250193288	0.992772119265666
Merged-chr1-170365890-4	chr1	170365834	170366034	+	835.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 4 of 9)	MTD|LTR|ERVL-MaLR	57073.0	NM_001039593	76925.0	Mm.33631	NM_001039593	ENSMUSG00000042800	Spata46	1700015E13Rik	spermatogenesis associated 46	protein-coding	3.36318786767338	3.25152905034012	3.8674694323424	3.26927827845081	3.55266043945822	3.34885476911166	3.46765618278501	3.82272427814941	0.340379797369349	0.534596091336181	0.789286995820758
Merged-chr4-141993769-3	chr4	141993648	141993848	+	998.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 2 of 31)	intron (NM_177868, intron 2 of 31)	10756.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	4.54466414185446	4.09386308537307	4.54542875149356	4.197170412107	4.05337879086306	3.98667980563224	4.25196700684072	4.13026430029767	-0.605249747096275	0.149365716707903	0.431576920047058
Merged-chr11-97150124-4	chr11	97150038	97150238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198100)	promoter-TSS (NM_198100)	-426.0	NM_198100	73174.0	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	5.85783603398539	5.58296429920647	5.42280932472127	5.48365093646137	5.91175804709984	5.71452128727094	5.5117024145146	5.71758182513979	0.23782580766545	0.386862388235836	0.687913211227823
Merged-chr1-39493286-4	chr1	39493186	39493386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14531.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	5.87197663004431	6.00928059515254	6.2223463909842	6.06582909575866	5.98754387063105	5.81811028205487	6.05891079962412	5.6638551035104	-0.240769707984436	0.336929924617957	0.646790234482633
Merged-chr11-111066071-4	chr11	111065989	111066189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008425)	promoter-TSS (NM_008425)	-75.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	7.38822384973443	7.23881783608199	6.73230337682179	7.14726054211991	7.68580556783023	7.40173202645046	7.27330244674497	7.16330559174656	0.342384646006144	0.12309923372018	0.389007542303628
Merged-chr16-64899239-1	chr16	64899139	64899339	+	564.0	f0_balb.idr	Intergenic	Intergenic	47238.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	3.53617245970325	3.25801970056242	3.37346844434053	3.37519959733143	3.36066449614726	3.42735033376208	3.41688057318719	3.63265654662224	0.25342116581174	0.617746189100527	0.835703810586076
Merged-chr4-149710711-4	chr4	149710606	149710806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9077.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	7.31073294764933	7.49678255139424	7.09805009824499	7.4221925129408	7.33078575532714	7.10545538213597	7.37467494357301	7.26481418487257	-0.0961841500714843	0.612710595122626	0.832832725096038
Merged-chr13-73803538-4	chr13	73803434	73803634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 17 of 24)	intron (NM_001360694, intron 17 of 24)	39837.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	6.48903624860506	6.32666210905605	6.14198084466969	6.56792085300158	6.30635080543616	6.20965096110772	6.39160351163938	6.15851332376247	-0.197755404311093	0.392173136980655	0.691774675781771
Merged-chr6-120917461-4	chr6	120917344	120917544	+	901.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007544)	promoter-TSS (NM_007544)	-620.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	4.35003650053458	4.12485854767078	4.30540877164074	3.69660081269663	4.44647024290412	4.86917104308025	4.28587128784808	4.76226594872777	1.13025941926012	0.00883122143934242	0.0721602150878911
Merged-chr8-33656165-4	chr8	33656118	33656318	+	871.333374	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	B3|SINE|B2	2980.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	2.61787991673536	2.62141738916299	2.61811646878968	2.5053202146387	2.9534826400275	3.36512239180694	3.23096495233816	3.19342978937881	2.79108481721179	1.64142491752846e-05	0.00042954038310573
Merged-chr11-26585571-1	chr11	26585471	26585671	+	575.333313	f0_balb.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	8349.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	3.2969559465994	3.42742213337955	3.49715104419313	3.24150053967884	2.90415904193061	3.17212649339332	3.05044648122281	2.77256844241776	-1.60286694076363	0.00964645277195931	0.0769672527581316
Merged-chr16-4213316-4	chr16	4213159	4213359	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001025432, exon 1 of 31)	5' UTR (NM_001025432, exon 1 of 31)	145.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	4.41331184986432	4.26934587151847	4.45669404448226	4.25858771173562	4.52049448689235	4.49924788326012	4.73129230587673	4.53506912399454	0.530942105557645	0.142889869415564	0.42089372062718
Merged-chr1-160234052-4	chr1	160233951	160234151	+	900.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038621, intron 6 of 8)	intron (NM_001038621, intron 6 of 8)	-21159.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	5.5903529223132	5.6054529497747	5.67929676749726	5.69005829035105	4.48447058218984	4.54188001141905	4.59077651176609	4.50873613633992	-2.21534305432423	1.24708728209191e-11	1.11236122370953e-09
Merged-chr9-57854468-4	chr9	57854371	57854571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20237.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	5.58057125677548	5.36724693260252	5.47577193127399	5.29393565298196	5.66902942256493	5.53524252475037	5.3034421379263	5.32607152814398	0.0963046302826211	0.735831566252676	0.895714951678205
Merged-chr16-58685732-4	chr16	58685577	58685777	+	843.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15469.0	NM_007757	12892.0	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	3.72521903099959	3.38433208511314	4.04316691227367	3.60517184625247	3.56184134363243	3.61903183572463	3.54774144163811	3.99983288339947	-0.0329145313881349	0.949049131692921	0.981680324135998
Merged-chr4-119806736-2	chr4	119806638	119806838	+	699.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-7940.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	3.06176532014668	3.29909287813937	3.3149143969992	3.45129797988852	3.47436644328343	3.36738420202053	3.4622829118675	3.3132068764546	0.376105647905161	0.483595859881699	0.757907164949677
Merged-chr10-81182871-4	chr10	81182754	81182954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190474)	promoter-TSS (NM_001190474)	-153.0	NM_001190474	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	8.69151616640239	8.87329203822858	8.68851277971638	8.64433311324678	8.77293678668435	8.78952035252543	8.83905033844884	8.72599881678456	0.0704366525925533	0.626931777055107	0.840890929247264
Merged-chr5-97962037-3	chr5	97961939	97962139	+	981.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133738, intron 11 of 16)	intron (NM_133738, intron 11 of 16)	68923.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	3.9060925010033	4.09573393485469	4.36167620553759	4.32128213954277	3.31306353547209	3.48029981118973	3.78756924398389	3.74614206230179	-1.79630166401721	0.000408173680255551	0.00654798160624518
Merged-chr11-3174025-9	chr11	3173891	3174091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 6 of 32)	intron (NM_030207, intron 6 of 32)	19472.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	9.14034169940938	8.77909389591447	9.6387182294419	8.96841689743357	5.98612810109811	6.55213693926057	6.20558781589648	6.86307130966856	-3.63057484000085	1.80470058449966e-43	9.88129099262315e-40
Merged-chr12-52603284-7	chr12	52603193	52603393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045910)	promoter-TSS (NR_045910)	-971.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	4.36207768818373	4.78357794877027	4.78482686534718	4.64352616492629	4.55817988755554	4.95627642304821	4.48412453802687	4.98059272410458	0.214979689351542	0.5609903784899	0.804831573486766
Merged-chr5-100498603-4	chr5	100498496	100498696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001115010)	promoter-TSS (NM_001115010)	-23.0	NM_001115010	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	6.8586194517357	7.22783742266708	6.83116701861429	6.82054370683417	7.08184642352017	7.22074499979046	7.35705832690952	7.11030830254688	0.343925778071552	0.0914587164550521	0.330476594322057
Merged-chr6-108733815-3	chr6	108733737	108733937	+	789.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49222.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	3.30894990018166	3.23178015228717	3.19841248941508	3.12419559716795	3.19887811863106	3.24953353655619	3.00265089557842	3.19674909833273	-0.177564900373107	0.746580994645838	0.900213602996542
Merged-chr12-11265966-4	chr12	11265882	11266082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177331)	promoter-TSS (NM_177331)	96.0	NM_025695	67241.0	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	8.56724991331494	8.84671886417546	8.73167309718627	8.65918006123581	8.50568480658512	8.5083984968687	8.62419899709238	8.28481066819667	-0.27405158530542	0.0838493922856831	0.31486762825126
Merged-chr10-87688025-4	chr10	87687930	87688130	+	950.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	166235.0	NM_008777	18478.0	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	4.11645468291877	4.53320786022974	4.74092160633805	4.80064031443536	4.8987089061393	5.05685224468052	5.10645354471353	4.73777666316634	0.752633437008944	0.0477959226070941	0.225526415329821
Merged-chr16-8667477-4	chr16	8667370	8667570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025821, intron 1 of 3)	intron (NM_025821, intron 1 of 3)	4683.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	6.65338975815073	6.8973958844364	6.654556736355	6.76809650668635	6.57405249395651	7.00489214032401	6.97130491216227	6.68067106895355	0.0865993664989789	0.687202359650188	0.872152812040952
Merged-chr7-16892209-4	chr7	16892123	16892323	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010320, exon 1 of 4)	5' UTR (NM_010320, exon 1 of 4)	437.0	NM_010320	14709.0	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	4.59537921737404	5.04710386852403	4.63967028664432	4.93514702054078	5.10097568936975	4.97435907519089	4.98509354213899	4.59321422286225	0.206832141233024	0.557366183669964	0.802589488416607
Merged-chr14-52100506-5	chr14	52100224	52100424	+	757.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360183, intron 1 of 8)	MER5A|DNA|hAT-Charlie	3697.0	NM_001360178	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	2.82570509138536	3.19366017890844	2.96892015299785	3.04284575944887	3.1618780380762	3.43872080282818	3.08720782445977	3.37261871684	0.965882435181313	0.0972712425762991	0.341740857617887
Merged-chr3-88740064-4	chr3	88739961	88740161	+	838.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	23207.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	3.63807370053273	3.75832926046122	3.75586706824634	3.64380765839959	4.55909814992831	4.22628330543672	3.56318917446248	3.96097153062724	1.19660752335293	0.0156541760729134	0.108067680430366
Merged-chr7-30167241-3	chr7	30167126	30167326	+	847.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011980, intron 1 of 1)	intron (NM_011980, intron 1 of 1)	2515.0	NM_011980	26465.0	Mm.446516	NM_011980	ENSMUSG00000037029	Zfp146	OZF|Znf146	zinc finger protein 146	protein-coding	3.25874443144575	3.07548828178253	3.33948004450662	2.44683057723125	4.47608822937361	4.43090391465239	4.48969039241183	4.94079745220275	5.75413414226833	3.15657059773263e-06	9.87177234516743e-05
Merged-chr8-19703429-3	chr8	19703375	19703575	+	961.238098	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-26101.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	3.12354371273777	3.07196924382017	3.75985347249579	3.11578676547919	2.85466297475329	3.03234612463225	2.9112621689178	3.50289274932858	-0.733708324005826	0.266280421899457	0.578046727572705
Merged-chr10-69213662-4	chr10	69213533	69213733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331193)	promoter-TSS (NM_001331193)	439.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	4.62445185119249	4.24070737186893	4.58755179846465	4.29363801453065	4.38403045362103	4.51018007648477	4.56592157246172	4.62213563059452	0.19477320871254	0.603430263066814	0.82809560771388
Merged-chr18-67457757-4	chr18	67457626	67457826	+	845.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7123.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	4.11047174646442	3.90390912864947	3.86355117729261	4.36423997333845	4.05077546158294	4.03858686917584	4.21987079924139	3.80585406126622	-0.14588888721966	0.746587540738652	0.900213602996542
Merged-chr14-120277915-1	chr14	120277815	120278015	+	700.0	f0_balb.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	2246.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	3.70687531130486	3.7719928370863	3.48712374095524	3.75547133423901	3.51824132749559	3.6021443221265	3.64113737791288	3.80254453791472	-0.156042964848772	0.743811031414648	0.899088499899182
Merged-chr15-67905468-4	chr15	67905363	67905563	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	353393.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	5.38809686942627	5.83825370679456	4.98963014795061	5.03638661525342	4.87633685003617	5.20163588691987	4.7730412941137	4.5654492277304	-0.920864348229285	0.0151267147323941	0.105477211174352
Merged-chr2-14073981-4	chr2	14073845	14074045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038162)	promoter-TSS (NR_038162)	-11.0	NR_038162	70957.0	Mm.399049	NR_038162	ENSMUSG00000086657	Stamos	4921530L18Rik	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, opposite strand	ncRNA	6.27873695073348	6.78927253614173	6.93183151435074	6.45756197097693	6.22766853389002	6.92543689091055	6.55168752218076	6.70222640788778	-0.0260558377443581	0.920156960857959	0.970409558278764
Merged-chr5-117389078-4	chr5	117388976	117389176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028128)	promoter-TSS (NM_028128)	-53.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	7.56446652219413	7.69790253153458	7.25171550204212	7.55401682878094	7.65879587198118	7.77831388494983	7.80752334028704	7.56947744986	0.229474632669625	0.208132725333577	0.512299580071882
Merged-chr5-62893207-4	chr5	62893100	62893300	+	725.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79377.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	3.2404859401247	3.47414303703102	3.85212968167654	3.49559107460265	3.67223923360697	3.92810554678865	3.5402695864606	3.55224999643959	0.468930606407129	0.363071565352337	0.66823863734402
Merged-chr8-13602727-2	chr8	13602597	13602797	+	957.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 4 of 23)	intron (NM_009025, intron 4 of 23)	-40236.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	2.72919875632982	2.70894377666415	3.09168033427893	2.42855046159358	2.97277077332308	2.90679793813938	2.91170100071086	2.92151202379338	0.788989153908556	0.241063596169133	0.551619163882296
Merged-chr15-5414602-4	chr15	5414513	5414713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81705.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	6.90402234260601	7.05306233892348	6.79410991244755	7.12110254756765	7.10019824416623	6.84982053533672	6.95966653410058	6.71456273821804	-0.0876325444774671	0.670980126749974	0.864428858677581
Merged-chr12-8313921-4	chr12	8313807	8314007	+	891.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021429, intron 1 of 6)	intron (NM_021429, intron 1 of 6)	474.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	4.54426820615204	4.52275557240098	4.6611313817691	4.76298742400258	4.299213310106	4.45357193504934	4.80983560173329	4.27298696004034	-0.361347874826835	0.342088885108404	0.651084026125481
Merged-chr4-141156460-4	chr4	141156351	141156551	+	849.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 1 of 9)	RSINE1|SINE|B4	8529.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	3.73631387931251	3.95572107941583	3.73679948031367	4.09128556532464	3.80742947196066	4.16481924650382	4.0236975765933	3.99307570836096	0.251554452681107	0.577936484473417	0.814391164493464
Merged-chr7-43525556-2	chr7	43525456	43525656	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	7615.0	NM_001111058	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	3.02929773296988	2.92011456949593	2.68498937652213	2.42978616460947	3.1629399644589	3.26184700201056	3.28782608455856	2.96582626267753	1.70001203736367	0.011937629199002	0.0895655643254733
Merged-chr7-99782162-4	chr7	99782076	99782276	+	984.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15012.0	NM_146356	258353.0	Mm.377450	NM_146356	ENSMUSG00000073997	Olfr521	MOR101-2	olfactory receptor 521	protein-coding	5.2430857810333	5.0267187174511	4.85650290995828	4.77193811465869	5.0932052162614	4.7874530111331	4.97505536806336	4.96172971055839	-0.0140596050850017	0.966164012646381	0.988026381474581
Merged-chr6-84015427-4	chr6	84015334	84015534	+	983.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 1 of 54)	intron (NM_001077694, intron 1 of 54)	-3952.0	NM_001310152	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	4.53599454315255	5.06067095274514	4.22645717453045	4.87567526672038	4.95690115045925	5.20138561831148	4.83898742211898	4.99530688640658	0.551443959601911	0.149019027131579	0.43100468639572
Merged-chr10-99211690-4	chr10	99211616	99211816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51515.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	7.24194927211765	7.45208957081946	7.52852974728322	7.29951138156303	7.29538964464274	7.3979507215007	7.37195918447361	7.31316686992574	-0.051616423330984	0.772662254923862	0.911004251171536
Merged-chr14-74733566-2	chr14	74733466	74733666	+	765.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285423, intron 1 of 8)	intron (NM_001285423, intron 1 of 8)	1269.0	NM_016903	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	2.04797159806553	2.08188076946439	2.04811545127826	2.07485360171082	2.19791215016655	2.60503611283377	2.41826857384358	2.91881346544081	3.03302482706117	0.000728741488329243	0.0104599899975372
Merged-chr6-88069970-4	chr6	88069893	88070093	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14480.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	5.04988085509072	5.73892686962792	5.41820516313443	4.90960661710587	5.92541434712061	5.47345058639221	5.39098165496883	5.62769803129362	0.549179702645472	0.103242754230958	0.352981219242295
Merged-chr6-38712346-4	chr6	38712250	38712450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 12 of 14)	MIRc|SINE|MIR	49281.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	6.27168142325858	6.87918266242685	6.35489072864767	6.69046274856914	6.86665568982565	7.03369106624679	7.0528483584461	7.07247145126764	0.591001945766215	0.00907945315643228	0.073556384728169
Merged-chr16-26689926-4	chr16	26689847	26690047	+	991.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152416, intron 4 of 12)	intron (NR_152416, intron 4 of 12)	65555.0	NR_105063	100504628.0	Mm.393275	NR_105063	ENSMUSG00000092545	Gm20319	-	predicted gene, 20319	ncRNA	5.4904551457549	4.940191396055	5.41257687206912	5.55197272283364	5.1251817975067	4.97878340720679	5.38533830288673	5.10367182504849	-0.401886881477656	0.210898069917694	0.515558392645929
Merged-chr7-28671357-4	chr7	28671259	28671459	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-21490.0	NM_207238	233040.0	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	5.06119617325925	5.07323151971093	4.95041719048333	4.86183299060607	5.52525162098413	5.37233467927725	5.32160532625076	5.6687864634319	0.922705881652702	0.00160442805614373	0.0197069171023735
Merged-chr14-17428022-4	chr14	17427901	17428101	+	951.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-232959.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	4.77319142442123	4.31503616431646	4.80842330565827	4.98026811411433	4.55931932193434	4.5435025018414	4.60438045810052	4.31441477438643	-0.524478057839808	0.171103358420647	0.464172800862232
Merged-chr8-72162268-2	chr8	72162164	72162364	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023126, intron 1 of 7)	intron (NM_023126, intron 1 of 7)	1064.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	3.30516864676173	3.1909204672371	3.305599314918	3.33463788854175	3.01544988984913	3.53404404662883	3.34984913685843	3.61492772863119	0.372668359466043	0.503064644952781	0.770172678964447
Merged-chr19-56745239-4	chr19	56745160	56745360	+	940.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22888.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	4.4752987016742	4.85826111616322	4.56161748640062	4.47472608638811	4.70745445121121	4.65058497564347	4.80026036820963	4.59957270853525	0.207070552182305	0.558265020082716	0.8030434967081
Merged-chr13-15850556-4	chr13	15850457	15850657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155430, intron 3 of 3)	Arthur1|DNA|hAT-Tip100	43314.0	NR_046131	328190.0	Mm.446957	NR_046131	ENSMUSG00000113338	A530046M15Rik	A530046M15	RIKEN cDNA A530046M15 gene	ncRNA	5.38234703570981	5.28180552072337	5.6518810424838	5.84250571803973	5.98547762423126	5.828871593166	6.12439145464542	6.22180643616734	0.757303109486242	0.0075299454443235	0.0643147761019092
Merged-chr15-103310609-4	chr15	103310536	103310736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030720)	promoter-TSS (NM_030720)	-198.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	7.81512218674872	8.19406940913874	7.95339196496069	7.67056007423365	7.84479204790023	8.03144343340069	7.75552987431557	7.33505714527033	-0.198872607599724	0.348806430586445	0.656478715798452
Merged-chr2-12174934-4	chr2	12174828	12175028	+	913.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001309, intron 22 of 29)	intron (NM_001001309, intron 22 of 29)	-126318.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	4.2032641687948	4.11689071486674	4.37775767075235	4.43793050149298	4.41144997122221	3.88762056600479	4.50878148811722	4.15400457534612	-0.066071096763305	0.876006878539137	0.953384132855758
Merged-chr7-110018718-1	chr7	110018618	110018818	+	1000.0	f0_balb.idr	intron (NM_181517, intron 1 of 24)	CpG	467.0	NM_001362172	233726.0	Mm.222328	NM_181517	ENSMUSG00000066232	Ipo7	A330055O14Rik|C330016G14|Imp7|Ranbp7	importin 7	protein-coding	5.51505397797523	5.47632359242027	5.76991154230177	5.76002065234185	5.48671903872844	5.41346261284919	5.46016730384918	5.89648601580742	-0.11325148014244	0.688840101102422	0.872980495973815
Merged-chr6-146125021-4	chr6	146124911	146125111	+	960.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 55 of 56)	intron (NM_019923, intron 55 of 56)	190889.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	4.95255141602334	5.70732800990997	5.89699585033719	5.64103208537896	5.86213739112177	5.49585364994035	5.26024323437538	5.10834085093189	-0.206751657227476	0.557685163253116	0.802816324871987
Merged-chr9-100866215-4	chr9	100866117	100866317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009282, intron 14 of 33)	intron (NM_009282, intron 14 of 33)	168667.0	NM_001311149	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	6.63952462578391	6.97957784789364	7.07136084749224	6.98990251679562	6.80261952044141	6.71843471243132	6.98949640231905	6.48264704729762	-0.240178450793206	0.270639886716581	0.58243909949623
Merged-chr10-25381324-4	chr10	25381221	25381421	+	904.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	L1MC4|LINE|L1	21523.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	4.7388996715256	4.78290341115503	4.66152354398674	4.90767282703835	4.64626264550486	5.01910110417181	4.6400134105371	4.57543071149227	-0.127105545599449	0.714404517209118	0.885790916272019
Merged-chr12-110932521-4	chr12	110932408	110932608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175336, intron 9 of 20)	B1F|SINE|Alu	43244.0	NM_001081057	104859.0	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	5.36636628598081	5.48418358162575	5.89039164741862	6.00284810038806	5.58030388280445	5.48052951866301	5.72560968995318	5.84265732505859	-0.110783479399582	0.708134071511729	0.882710273980338
Merged-chr12-52049547-4	chr12	52049450	52049650	+	949.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21487.0	NM_008159	14762.0	Mm.12890	NM_008159	ENSMUSG00000035148	Gpr33	-	G protein-coupled receptor 33	protein-coding	3.97890081814852	4.38323408082762	4.65615913217024	4.76686396910913	4.36946085576894	4.10432035523739	4.63364624018339	4.38065644047832	-0.242741641067581	0.575834901145828	0.813224984199895
Merged-chr13-21161367-4	chr13	21161273	21161473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18318.0	NM_146534	258527.0	Mm.271440	NM_146534	ENSMUSG00000045474	Olfr1368	MOR256-15	olfactory receptor 1368	protein-coding	5.42902428903719	5.4382320775881	5.34250453101925	5.28052310209061	5.61854819289361	5.42414973777538	5.22342179730451	5.48121211978303	0.153268930908345	0.587079758235639	0.819066315706721
Merged-chr17-71475448-4	chr17	71475348	71475548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028887)	promoter-TSS (NM_028887)	-105.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	8.78572406071227	8.53218363726702	8.64168154183381	8.59951424981503	8.7952904903967	8.95662036681501	8.96124138587645	8.6630705350621	0.260606986285953	0.0931471452523501	0.333867879097614
Merged-chr2-179948992-4	chr2	179948900	179949100	+	894.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081092, intron 1 of 14)	intron (NM_001081092, intron 1 of 14)	27646.0	NM_001081092	228980.0	Mm.235542	NM_001081092	ENSMUSG00000039117	Taf4	135kDa|AI450312|TAFII130|TAFII135|Taf2c1|Taf4a	TATA-box binding protein associated factor 4	protein-coding	4.46265306786095	4.43141330214273	4.0089626675041	4.18247916621887	4.20489773391673	4.18699895574618	4.3643256299549	4.34039282133066	-0.0120508256286377	0.975975777730339	0.991438232740523
Merged-chr12-76614544-4	chr12	76614428	76614628	+	970.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 15 of 35)	intron (NM_013675, intron 15 of 35)	-66603.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	4.45950544603186	4.30663186504974	4.33167749767823	4.17729963339256	4.82057354565549	4.46056283322216	4.12071691998228	4.49739869524918	0.459087363405677	0.25140231670245	0.562842767366097
Merged-chr12-52604933-4	chr12	52604822	52605022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2600.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	6.85342072804243	7.06813564462562	6.76039858607551	6.59085727051525	6.55077786799389	6.36529431270104	6.56260219857651	6.38434635971259	-0.501320838867658	0.0242814218682917	0.145637555316156
Merged-chr6-58606930-4	chr6	58606833	58607033	+	957.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011920, intron 1 of 15)	intron (NM_011920, intron 1 of 15)	10261.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	4.99289896070949	4.58025589416997	4.75271994616154	5.17303977996604	4.65762507840224	4.76723187128204	4.52721021570572	4.71113317559616	-0.506975968028321	0.159895767269028	0.44769279485069
Merged-chr17-43579911-4	chr17	43579820	43580020	+	918.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	11469.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	4.71229499247159	4.89408924069337	4.59989686893675	4.20806427188551	4.61456344946113	4.56257795066727	4.65416812902031	4.28663799703665	-0.167417275059287	0.673722149933749	0.86586684339396
Merged-chr6-134259772-3	chr6	134259674	134259874	+	681.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 6 of 8)	intron (NM_001303102, intron 6 of 8)	-136555.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	4.21684706476972	3.6598460939946	3.49099680120947	3.75413401739379	3.48953066687729	3.72641822916231	3.53725715537187	3.48923211336425	-0.755569175057993	0.142478282095118	0.420100767653266
Merged-chr7-19669097-4	chr7	19669011	19669211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4081.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	6.3000448834494	6.52173943900885	5.73005960663515	6.17606515083672	6.27361637167488	6.30049109754192	6.51705245004369	6.36812302455125	0.225997175284452	0.375774412575491	0.678622999764319
Merged-chr5-104508488-4	chr5	104508413	104508613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001166581, exon 1 of 2)	5' UTR (NM_001166581, exon 1 of 2)	161.0	NM_001166581	100042165.0	Mm.482189	NM_001166581	ENSMUSG00000079065	BC005561	-	cDNA sequence BC005561	protein-coding	5.12955933374169	4.93195431677149	5.82471134701176	5.21894607550668	5.35744095247539	5.69785161836893	5.3601610996255	5.46770124305452	0.282888270115565	0.393715580121297	0.69283001501777
Merged-chr2-172401245-4	chr2	172401109	172401309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	7415.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	8.53813855247599	8.49405155367513	8.57288345217627	8.38586262533255	8.78550868275258	8.70762331304458	8.80278011575822	8.60446552057958	0.294219915852111	0.0468496578905591	0.22251943510687
Merged-chr4-86538147-3	chr4	86538062	86538262	+	921.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081096, intron 1 of 3)	B2_Mm2|SINE|B2	20141.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	4.10957945316973	4.30674197345377	3.90629565947896	3.67865395914328	4.26879037733881	4.13673965619547	4.18229523373279	4.32388699607594	0.572362444443788	0.190207324965102	0.489311966784848
Merged-chr5-17839330-4	chr5	17839225	17839425	+	851.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	Lx5b|LINE|L1	-3429.0	NM_007643	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	3.9911287591428	3.40516162007288	4.15664864708242	3.80326864700708	3.80076136101278	3.63478272987913	3.68075246237724	3.89795898975156	-0.298294738549934	0.551499808623136	0.798941768998782
Merged-chr7-46845801-4	chr7	46845711	46845911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102727)	promoter-TSS (NR_102727)	7.0	NR_102727	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	7.73235384173	7.94320184568508	7.96636589120907	7.89821650563691	7.90485955182216	7.9597026439373	8.09417032173843	7.77692947418867	0.0630152648507084	0.706436450798003	0.882026349021226
Merged-chr10-17947401-4	chr10	17947296	17947496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033432, intron 1 of 3)	CpG	671.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	7.06635921173578	6.73729762754572	6.95675254720312	7.06678597249775	7.09607139209326	6.87828561679272	7.22721919789898	6.80164147833758	0.0682259961824803	0.742862931558994	0.898691548174051
Merged-chr7-71877349-2	chr7	71877248	71877448	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32347.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	2.40863023333211	2.51994836808947	2.46944054626955	2.25121096992682	2.15621154627777	2.15487018638072	2.1291812930389	2.20745692425023	-1.68779207193596	0.0384190435411976	0.196636880723298
Merged-chr9-65655650-4	chr9	65655543	65655743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028030, intron 6 of 7)	ID_B1|SINE|B4	-20905.0	NM_010952	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	6.70881595091587	6.83318803796977	6.38830920496798	6.85410409641983	6.1550786717058	5.94697352111244	6.78388320946729	6.55472575913699	-0.458987454468594	0.0835332137909386	0.314230739528629
Merged-chr12-54825399-2	chr12	54825299	54825499	+	693.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-29737.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	3.01759087460153	3.04357081580089	2.87383912117549	3.0492198292021	3.26954346789594	3.49224559687654	3.30897033690909	3.56666979175134	1.5279716556576	0.0066820579343866	0.0587986403401785
Merged-chr1-84838861-4	chr1	84838758	84838958	+	978.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025386)	promoter-TSS (NM_025386)	446.0	NM_133975	14897.0	Mm.209265	NM_133975	ENSMUSG00000026219	Trip12	1110036I07Rik|6720416K24Rik|AA410158|Gtl6|TRIP-12	thyroid hormone receptor interactor 12	protein-coding	5.11114558949181	4.53942805213669	5.31937523287151	4.84110667671073	5.19381703365385	4.92136197547425	5.14909277039476	5.3689967190499	0.376108928669969	0.279770969417227	0.591827681649692
Merged-chr10-118592821-4	chr10	118592725	118592925	+	798.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36300.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	3.99987743440931	3.55717006201678	3.85050437475595	3.79410569065061	4.16786057985671	4.12400914561386	4.07305146849493	3.99804414656109	0.791137638336569	0.0681417317256311	0.278653609994353
Merged-chr1-177463035-4	chr1	177462920	177463120	+	850.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1O|LTR|ERVL-MaLR	17199.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	3.62150259067923	3.92057870998118	3.9510174197251	4.12013984017651	3.94192135064547	3.97052498840276	3.98135407337191	4.04194030590144	0.1412325822405	0.752036861788614	0.902329068825205
Merged-chr1-64485544-4	chr1	64485445	64485645	+	898.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-47259.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	4.17784179246038	3.73609081763967	4.1784817348349	4.41231595198587	4.08686695377305	3.81090017377608	4.36618817482561	4.42185900116766	0.0865123779628376	0.852985961491243	0.944678751070911
Merged-chr13-54824883-4	chr13	54824784	54824984	+	875.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35479.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	4.55302175284675	4.70302024846461	4.39503194958004	4.84572675537303	4.15094388849187	3.80855023729854	4.09583638203374	4.30488967664382	-1.30436979154365	0.00182411436905907	0.0217667454610654
Merged-chr17-37525650-4	chr17	37525541	37525741	+	995.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4316.0	NM_001005485	545205.0	Mm.383371	NM_001005485	ENSMUSG00000090675	Olfr111	-	olfactory receptor 111	protein-coding	5.47420733073317	5.0995623342826	5.27826007769404	5.19794807071974	6.25342808901781	6.04174463323883	6.11494493247798	6.24566646806877	1.49930960195975	4.46089800229066e-09	2.53409624026374e-07
Merged-chr14-66846606-4	chr14	66846514	66846714	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	21986.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	6.48581763235947	5.95603391479217	5.61489276993162	5.66727478474394	6.65298682017323	6.92443800267039	7.01512976643099	6.15097613235524	1.12039913774528	0.000236644157535291	0.00417449677551536
Merged-chr8-70527732-4	chr8	70527645	70527845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199631)	promoter-TSS (NM_001199631)	2.0	NM_010223	14232.0	Mm.141864	NM_010223	ENSMUSG00000019428	Fkbp8	38kDa|FKBP-38|FKBP-8|FKBPR38|Fkbp38|mFKBP38	FK506 binding protein 8	protein-coding	6.75077070933537	6.56708502031193	6.34327071711116	6.31862069677307	6.4716971824787	6.25408107921826	6.46702091060325	6.41088404422669	-0.130360965095277	0.566988793509537	0.808119800518362
Merged-chr9-52168763-5	chr9	52168588	52168788	+	860.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162921)	promoter-TSS (NM_001162921)	-577.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	3.19986127174129	3.40018283369556	3.20027292033431	3.33684870489519	3.00092217844543	3.3116146536233	3.06863143367954	3.01227496593475	-0.753583546075097	0.183944122510147	0.481128824317413
Merged-chr7-130669257-4	chr7	130669154	130669354	+	872.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_206856, intron 3 of 20)	intron (NM_206856, intron 3 of 20)	-23302.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	4.35408290443458	4.13513992959054	5.00016144031074	4.76301926889177	4.37909156773751	4.57613405642133	4.33559611900288	4.56649387185553	-0.323060404241657	0.436967601473852	0.725408654678613
Merged-chr6-129344615-4	chr6	129344523	129344723	+	953.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5621.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	4.58831304271989	4.68463486058227	5.00254863925276	4.87934017570289	4.80807243802915	4.89055283706242	4.91276917005958	4.99912281071067	0.195207217514634	0.556853350971154	0.802235069284239
Merged-chr9-31857796-3	chr9	31857679	31857879	+	699.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013800, intron 2 of 3)	intron (NM_013800, intron 2 of 3)	55506.0	NM_013800	12023.0	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	3.45646360777215	3.39516203962017	3.45700640245165	3.62326378439507	2.8235175560797	2.9650174615342	2.84805673603354	2.85432715602632	-2.87328064797888	2.82024462607506e-05	0.000688180295644144
Merged-chr17-36271330-5	chr17	36271275	36271475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178281)	promoter-TSS (NM_178281)	56.0	NM_001357889	79263.0	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	6.36175891566223	6.91476203380801	7.02711575848633	6.50620709541295	6.81871494494816	6.98648165466711	6.77539037977359	7.02215281101911	0.250881044272375	0.281938784602599	0.594047739897827
Merged-chr17-36904923-1	chr17	36904823	36905023	+	665.5	f0_balb.idr	intron (NM_146077, intron 3 of 7)	intron (NM_146077, intron 3 of 7)	6793.0	NM_146077	224762.0	Mm.213417	NM_146077	ENSMUSG00000058063	Trim31	BC026666|HCG1|HCGI|RNF	tripartite motif-containing 31	protein-coding	3.31508287162993	3.43079919888445	3.37174167947301	3.54053336090579	3.17907041182956	3.24013239254471	3.30329534176187	3.36992456812085	-0.559753399127607	0.28896479170539	0.600929003808641
Merged-chr14-20298303-4	chr14	20298205	20298405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359869, intron 3 of 9)	intron (NM_001359869, intron 3 of 9)	3615.0	NR_153364	67725.0	Mm.317636	NM_026341	ENSMUSG00000021809	Nudt13	4933433B15Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 13	protein-coding	6.16335547795606	6.38788187358857	6.24610088792283	6.30380480580344	6.44604336137638	6.70318430518009	6.4304130183198	6.42516544510193	0.325591852952877	0.136274828523614	0.410734502857482
Merged-chr3-60528015-4	chr3	60527938	60528138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	26859.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	6.97853469523542	7.02404244450685	6.75508010866923	7.24256945531437	7.14702197747416	6.78741334089731	7.23971732244489	7.29111439964834	0.148639314053021	0.491667386203145	0.763153828009839
Merged-chr9-124021887-3	chr9	124021775	124021975	+	908.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009914)	promoter-TSS (NM_009914)	-96.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	4.30878231038025	4.44325995947229	4.34678677079832	4.08399145842997	3.6632642939697	3.68040620118635	3.48025195877064	3.68570854465512	-1.93968897427607	5.84908579619892e-05	0.00129215418338809
Merged-chr10-15262545-4	chr10	15262471	15262671	+	965.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB2_1A-I_MM-int|LTR|ERVK	502282.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	5.94465542674637	5.94206124418911	6.25840800901759	6.31780829064159	5.26139488963473	5.48939737194751	5.28114131263999	5.07989210364471	-1.43397211659012	2.94588924550861e-07	1.14457123693263e-05
Merged-chr10-43707971-3	chr10	43707870	43708070	+	746.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38188.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	3.66465766490023	3.52632967479202	3.61345952949241	3.60912599372571	3.62292866681907	3.73018844009946	3.59901709894124	3.44289075216366	-0.00302823153808295	0.994924792996107	0.998190746524986
Merged-chr19-34390145-4	chr19	34390061	34390261	+	917.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER76|LTR|ERVL	84974.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	4.80881286656179	4.66353042898602	5.01407074392724	5.44084175073337	4.61193429273676	4.55743191389535	4.54557300804201	4.80639788590018	-0.829155042822791	0.0288327991464514	0.163136688160098
Merged-chr10-42089305-4	chr10	42089214	42089414	+	880.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70932.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	4.42141382538088	4.11788795934935	4.38064385174009	4.84644749719304	3.97209105327541	4.2769650786133	4.31824874872613	4.33504247061677	-0.620444295207065	0.149669375345167	0.432035602283179
Merged-chr17-65726981-4	chr17	65726884	65727084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	MIR3|SINE|MIR	45768.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	7.28406603593365	6.97863576871769	7.23065639538395	7.5866343301223	7.41895852703245	7.56489984726481	7.42748537324864	7.37295669250086	0.193447869288996	0.343617170968385	0.652264111594778
Merged-chr2-78060272-2	chr2	78060167	78060367	+	787.5	f0_balb.idr|f0_c57.idr	intron (NR_108098, intron 1 of 6)	intron (NR_108098, intron 1 of 6)	9090.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	4.14727017973883	4.54902811802255	3.95221413310805	3.84132232710077	4.15330083568732	4.07560582994511	4.03645335050347	4.05132858400218	-0.165098277198855	0.713403323839169	0.885339563529906
Merged-chr15-81112718-4	chr15	81112626	81112826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	-7679.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	7.79055190920598	8.08597541776612	8.06959521360133	8.21172407615001	7.93345193044575	7.76198765988676	8.01185811235795	8.00540810199336	-0.158631118160412	0.362967654255765	0.668158239901494
Merged-chr19-43624143-3	chr19	43624045	43624245	+	764.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11820.0	NM_008699	18089.0	Mm.56994	NM_008699	ENSMUSG00000044220	Nkx2-3	Nkx-2.3|Nkx2.3|tinman	NK2 homeobox 3	protein-coding	3.65940081146036	3.42770345734049	3.65990833271435	3.58462152184477	3.76850794079109	3.77773960223104	3.74565080882526	3.70963439915535	0.514788941372692	0.264374808064806	0.576455127446606
Merged-chr19-46618525-4	chr19	46618437	46618637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	-4864.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	8.09821596093829	7.99307952971709	7.86587860727031	7.70849377212525	7.79920163106938	7.79224653057052	7.77554208877686	7.72094265956389	-0.186383999451249	0.280924575793463	0.593104656237851
Merged-chr5-75155879-3	chr5	75155780	75155980	+	678.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083316)	promoter-TSS (NM_001083316)	-286.0	NM_001083316	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	3.17749515429449	3.26870234470649	3.44716627579076	3.26334971006466	3.23449699464194	3.01980264568165	3.10627945496801	3.3961860306808	-0.34674132076317	0.533719608202253	0.78893585014907
Merged-chr10-22743700-4	chr10	22743594	22743794	+	954.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12247.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	5.31605185776275	5.34014456017034	5.42158137250459	5.16565765739293	4.80563721889585	4.58864144732178	4.79962881218563	4.97061711367146	-0.984089474440934	0.00224165647261031	0.0255311767223296
Merged-chr11-8660987-4	chr11	8660875	8661075	+	924.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	B1F|SINE|Alu	3560.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.16434945052336	4.9272800805187	4.9769206790061	5.38591805889896	4.64469952047917	4.67113366558664	4.84784404651864	4.75255373177066	-0.833555129956207	0.0136389608187596	0.09819030971159
Merged-chr5-102497435-4	chr5	102497337	102497537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146161, intron 1 of 8)	intron (NM_146161, intron 1 of 8)	16046.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	6.09743187994258	5.56136435880296	6.07866088731849	6.53955590924027	5.87317761543569	5.59135817091767	5.83081036620608	5.88006889938949	-0.52257090872099	0.0816154266283992	0.310011444152987
Merged-chr5-3195620-4	chr5	3195510	3195710	+	763.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148283.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	3.29044400994986	3.30571443891726	3.533653039329	3.54038257125845	3.90298451079064	3.59260258106618	3.57350890073908	3.78225149719206	0.930645482416179	0.0637672247179056	0.268195744314104
Merged-chr15-81934172-4	chr15	81934072	81934272	+	924.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2587.0	NM_145473	105859.0	Mm.22524	NM_145473	ENSMUSG00000042109	Csdc2	AI415250|AI481750|Pippin	cold shock domain containing C2, RNA binding	protein-coding	4.87722730261621	4.26287256982055	4.44545318112055	5.11647440286194	4.48092525635199	4.83451466115718	4.27951931989784	5.0883843947748	-0.052820769060959	0.904590823753737	0.964559678221358
Merged-chr13-64152440-4	chr13	64152347	64152547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361047)	promoter-TSS (NM_001361047)	-74.0	NM_001361047	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	6.82801774679271	6.84038211526592	6.80048719921174	6.76803448571211	7.09601575770743	7.3397305532604	6.96608612018126	7.03309828181647	0.426449026223391	0.0279709073207627	0.159992061409882
Merged-chr10-77606579-4	chr10	77606469	77606669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301671)	promoter-TSS (NM_001301671)	-29.0	NM_001301671	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	8.08439321861043	8.39654893772689	8.01070055871454	8.14831138231836	8.48863446046444	8.50908815791453	8.53320577331699	8.10654275189497	0.319762031259629	0.0734984077995623	0.292020271770307
Merged-chr10-78135244-4	chr10	78135125	78135325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34543.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	6.65553684765984	7.46864681604564	6.86045618384528	5.89405539289185	7.27469744424465	7.17692011317258	6.59068303299877	6.37045590413419	0.086566749105222	0.868153670641501	0.95061428059965
Merged-chr6-134072577-4	chr6	134072487	134072687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	36887.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	6.98730465614271	7.1168799565225	6.69347930806609	6.74937384941106	6.62577509525784	6.60305991546673	6.70373868483447	6.54476983642935	-0.387618279724784	0.0677722718237322	0.277838185299054
Merged-chr12-108919035-4	chr12	108918945	108919145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	24773.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	6.67731589435567	7.16174637269125	7.13048755494244	6.68286998851742	6.06913507094116	6.2227934010104	6.36656408044839	6.1967367660439	-1.04214452209538	1.30473554616291e-05	0.000350584263647905
Merged-chr7-145293426-4	chr7	145293340	145293540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7469.0	NM_145379	211577.0	Mm.215151	NM_145379	ENSMUSG00000031070	Mrgprf	BC019711|Mgrc|MrgF	MAS-related GPR, member F	protein-coding	7.29477085717327	7.24556230857738	7.50697679680033	7.3765097090416	7.13084318272591	7.19400379854308	7.50458199408018	6.98498489593196	-0.193213176232686	0.32889716005689	0.640144325858488
Merged-chr19-5366589-5	chr19	5366530	5366730	+	994.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027236)	promoter-TSS (NM_027236)	-183.0	NM_027236	69860.0	Mm.299167	NM_027236	ENSMUSG00000024841	Eif1ad	2010003J03Rik|AI131644	eukaryotic translation initiation factor 1A domain containing	protein-coding	6.11447337957448	6.40255513830779	5.97883661853899	5.81937996422739	6.64595092206998	6.54554677316167	6.06247726782201	6.93626424224624	0.740036013285102	0.00715659176679564	0.0619330146344981
Merged-chr7-25297513-4	chr7	25297310	25297510	+	977.40625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008776, exon 2 of 6)	exon (NM_008776, exon 2 of 6)	545.0	NM_008776	18476.0	Mm.597	NM_008776	ENSMUSG00000005447	Pafah1b3	Pafahg|mus[g]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	protein-coding	3.25971387058474	3.25524791468454	3.76684001744912	3.21106310505208	3.31174284759451	3.65703565135949	2.9785365590817	3.37686485738006	-0.133845161841433	0.821954167507413	0.931941461548501
Merged-chr11-83640363-4	chr11	83640249	83640449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9029.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	7.37933077714815	7.10298534638546	7.25038319270864	7.22177441145666	7.21479955429301	7.11797469588427	6.83639347219377	7.08811652318561	-0.221664787958021	0.251867413619553	0.563082161340582
Merged-chr8-105481602-2	chr8	105481502	105481702	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175160, intron 5 of 13)	intron (NM_175160, intron 5 of 13)	2825.0	NM_001357252	70796.0	Mm.100917	NM_175160	ENSMUSG00000039199	Zdhhc1	4432412D04Rik|DHHC-1	zinc finger, DHHC domain containing 1	protein-coding	2.65570287406274	2.804509783966	2.77263939880897	2.63514233351918	2.54812453964726	2.40863923955235	2.38004028259403	2.45754680378638	-1.45783772561912	0.0451808534979737	0.217439348960938
Merged-chr5-35757144-3	chr5	35757056	35757256	+	945.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177696)	promoter-TSS (NM_001177696)	-724.0	NM_001177697	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	3.88341211344436	3.9925253547451	4.25364435152018	3.73910984032704	3.44905996401941	3.40796301455926	3.76890271324397	3.67532949377421	-1.19197844927244	0.0180416733284267	0.119337261020731
Merged-chr13-54306245-4	chr13	54306155	54306355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65094.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	6.38362866498457	6.3298554820966	6.27085300164893	5.62858370274194	6.59946762698734	6.93442211190943	6.92251445039303	6.64145061615654	0.899255858210512	0.000627075682416061	0.0092487815993976
Merged-chr13-110368719-4	chr13	110368619	110368819	+	793.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11547.0	NM_177713	238875.0	Mm.30533	NM_177713	ENSMUSG00000046006	Gapt	9830130M13Rik	Grb2-binding adaptor, transmembrane	protein-coding	2.75699044453138	2.66474195682723	2.81795600874196	2.5434011355278	2.56512051033898	2.73295022937942	2.68462175855267	2.87418302289789	0.115608994094027	0.859206270546373	0.946659488677125
Merged-chr2-148050577-3	chr2	148050483	148050683	+	889.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3614.0	NM_010446	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	3.37744100692248	3.47810241446197	3.09098316666765	3.29238454862914	3.99778398734428	3.84125453619961	3.84425600062305	3.90369249987654	1.83278216740434	0.000239399168865432	0.00421369768562626
Merged-chr2-164862614-4	chr2	164862505	164862705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4897.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	7.27507332211385	7.50707301894459	7.69967894559241	7.45790298552884	7.45267524912835	7.33943001949975	7.41303792663258	7.4255452757669	-0.108803515027608	0.547957975894603	0.797149098360121
Merged-chr16-85134390-4	chr16	85134292	85134492	+	860.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	39315.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	4.12366308272937	4.28688897140761	4.02733682649144	4.01238487574523	4.21719074458363	4.2490346749528	3.95998427351739	4.21178234043294	0.138001266647515	0.735499945631551	0.895614633816326
Merged-chr3-95232538-4	chr3	95232458	95232658	+	893.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172395, exon 3 of 5)	exon (NM_172395, exon 3 of 5)	3615.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	4.17235829848296	4.16299814585153	4.17298273860562	4.18678127362667	4.45808283165326	3.85508211957001	4.47846272448853	4.21620716844467	0.272517843190433	0.513300497719566	0.776408179845743
Merged-chr11-47063957-4	chr11	47063858	47064058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 6 of 7)	intron (NM_011891, intron 6 of 7)	253159.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	6.90411429458353	6.87264785883993	7.07823593582009	7.41577458004499	7.54998869500432	7.58155159931277	7.60221272469942	7.19171936698441	0.525019022630782	0.0160113567961438	0.109746476706033
Merged-chr14-40904801-3	chr14	40904687	40904887	+	942.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11822.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	3.38093352108884	3.37177077906534	3.80131004164988	4.19700187159505	3.00312303827915	3.43402690365477	3.64343036024001	3.3164364339082	-1.21587004747118	0.049453187981393	0.230112340153466
Merged-chr1-186855729-3	chr1	186855615	186855815	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106357.0	NM_026041	67223.0	Mm.289841	NM_026041	ENSMUSG00000001305	Rrp15	2810430M08Rik|5430437H21Rik	ribosomal RNA processing 15 homolog (S. cerevisiae)	protein-coding	4.23203786740089	4.17508786748298	4.53883497589111	4.3330172736465	6.34596867191444	6.08908865261191	6.36005596813803	6.43047174554336	3.54973992560722	4.74345009248829e-25	2.96170205380021e-22
Merged-chr8-106022784-2	chr8	106022684	106022884	+	838.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301176, intron 2 of 14)	intron (NM_001301176, intron 2 of 14)	-11298.0	NM_028038	71986.0	Mm.307515	NM_028038	ENSMUSG00000045538	Ddx28	2410004K13Rik|AI449652|Mddx28	DEAD (Asp-Glu-Ala-Asp) box polypeptide 28	protein-coding	2.95753172403425	2.86006147079668	3.13124516431654	2.76383099165413	2.96780238022502	3.18761346017032	2.88485147110156	2.89320684005338	0.262999954847804	0.663924526825706	0.860780365686037
Merged-chr11-50224616-4	chr11	50224505	50224705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145926)	promoter-TSS (NM_145926)	-730.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	7.35839455784574	6.99139893959337	7.09130703928307	7.41599303061316	7.07602690759727	7.1026008445787	7.12522271869999	6.99963704827596	-0.217084111469125	0.273674867934084	0.585368814973261
Merged-chr4-59374646-1	chr4	59374546	59374746	+	609.0	f1_c57bl6.idr	intron (NM_001163288, intron 8 of 16)	intron (NM_001163288, intron 8 of 16)	63987.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	2.64731177559479	2.60138002939343	2.58771925623162	2.55413296587362	2.28503836108144	2.41671627822433	2.45113453884672	2.45763402708621	-1.14250605671154	0.111433569250023	0.368831900750868
Merged-chr6-129436237-4	chr6	129436150	129436350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175526, intron 2 of 5)	intron (NM_175526, intron 2 of 5)	15750.0	NM_001347475	243653.0	Mm.131289	NM_175526	ENSMUSG00000033082	Clec1a	5930406N14Rik	C-type lectin domain family 1, member a	protein-coding	7.21513179067493	7.21005029559386	7.24846724916647	6.92242871050748	6.89637425823571	7.24391720356394	7.26374996679913	7.15597942856799	-0.00570457637285081	0.977465262326942	0.991888117862217
Merged-chr16-78236547-2	chr16	78236447	78236647	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	18907.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	3.88230348086216	3.86284449842337	4.34581161165226	3.86071498648173	3.90006796062104	3.78096610352652	3.86675606798063	3.82885844962747	-0.41559430747811	0.36194840324692	0.66726561498867
Merged-chr2-92478479-4	chr2	92478376	92478576	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	-17958.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	5.48460455214625	5.78988897078574	5.51339754591768	5.54184847002897	5.57556288224948	5.66007404399878	5.45811622539129	5.19966451673007	-0.173856498729446	0.537088245030955	0.790925916893728
Merged-chr9-111063037-4	chr9	111062943	111063143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5525.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	7.53757638652398	7.78459984329069	7.65259077691277	7.49936767381185	7.05083510646542	6.87840102563437	6.68075893769233	6.51641716709825	-1.10610772184552	1.24607032886166e-07	5.24506445523619e-06
Merged-chr10-125388765-7	chr10	125388668	125388868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59805.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	4.48320114795883	4.596869125746	5.09981783124518	4.73918099132039	4.51426159122639	5.08566151101652	4.46397848827834	4.94417169214645	0.0488833310083101	0.899457877414047	0.962569456167014
Merged-chr4-95053367-4	chr4	95053278	95053478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1156.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	7.24104494169724	7.3829029401807	7.57837514843652	7.43293243229619	7.61534237177848	7.48594184168639	7.718075019897	7.43592281877586	0.207132956367584	0.251500384631617	0.56287087730158
Merged-chr7-31131037-4	chr7	31130935	31131135	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153431, intron 18 of 18)	ORR1E|LTR|ERVL-MaLR	-4012.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	6.04543124214915	5.70535762359186	5.53317264781488	5.61727433611025	5.58082829973027	5.46935297948926	5.44936575057764	5.18347348220295	-0.506886836891427	0.0796135044807655	0.30560371220603
Merged-chr7-90265767-4	chr7	90265682	90265882	+	863.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183293)	promoter-TSS (NM_183293)	-350.0	NR_111924	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	4.22954654919595	4.34551295662036	4.17906100411517	4.34361554729036	4.70325179291909	4.71194017948241	4.59554002975982	4.61444527531289	0.843796611154135	0.0193966962021868	0.125322599292182
Merged-chr14-14985439-4	chr14	14985343	14985543	+	885.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195229, intron 30 of 34)	intron (NM_001195229, intron 30 of 34)	164628.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	4.73543907347265	4.38836586804613	4.54246538934546	4.4380417445778	4.67288066741572	4.54098116699223	4.6774401273836	4.86893035646452	0.378290874306073	0.285580942663588	0.597319089002719
Merged-chr5-23440003-1	chr5	23439903	23440103	+	580.0	f0_balb.idr	intron (NM_026984, intron 1 of 25)	intron (NM_026984, intron 1 of 25)	5574.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	3.35776175673294	3.32280550370409	2.98729397841784	3.18836356474422	3.03919535613086	3.52666330971907	3.34447713624729	3.24408037849072	0.271142956128001	0.631982403377475	0.84364113460172
Merged-chr18-33213496-2	chr18	33213384	33213584	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001347624, intron 1 of 5)	intron (NM_001347624, intron 1 of 5)	378.0	NM_133774	170459.0	Mm.127058	NM_133774	ENSMUSG00000024378	Stard4	4632419C16Rik|9030213J02Rik	StAR-related lipid transfer (START) domain containing 4	protein-coding	5.56116800505059	5.48587991224106	5.61386149429391	5.42537809596848	5.57098410686235	5.73563672391754	5.50763020860331	5.22886833167574	0.0151164033147997	0.956706599430215	0.984724224578049
Merged-chr5-146675388-4	chr5	146675282	146675482	+	913.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90143.0	NM_001359057	14738.0	Mm.153539	NM_008151	ENSMUSG00000041468	Gpr12	Gpcr01|Gpcr12|Gpcr20|Gpcr21	G-protein coupled receptor 12	protein-coding	4.31920973215137	4.09958297338266	3.92818263809609	4.13163432313508	4.22959972069987	4.21451071349927	4.5962760769281	4.3586265421854	0.563183887463398	0.162085894200079	0.451144248358323
Merged-chr11-100570653-4	chr11	100570544	100570744	+	949.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 11 of 11)	intron (NM_028918, intron 11 of 11)	-4295.0	NM_009923	12799.0	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	4.57974250551634	4.63999863617309	4.1654923263921	4.33545335245467	4.53874950279759	4.44844113319448	4.63486210140481	4.92018350703045	0.458625468979505	0.228212984794999	0.537049703453888
Merged-chr16-92398912-4	chr16	92398775	92398975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	1203.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	5.34233342231957	5.8692861375821	5.55732949328691	5.2121539093708	4.99748179217601	5.33172004109629	4.95027360167185	4.97066904962286	-0.814747679418405	0.0131909338681833	0.0959253659382321
Merged-chr10-60705382-4	chr10	60705306	60705506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8916.0	NM_023370	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	5.75271065251305	6.04903098887446	5.93727955308284	5.75151794693854	5.75506433420471	5.71629685279745	5.62243095141149	5.69930098324615	-0.279640331493072	0.273532446307088	0.585166147392835
Merged-chr3-28781196-4	chr3	28781081	28781281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177586)	promoter-TSS (NM_177586)	-96.0	NM_177586	208691.0	Mm.193670	NM_177586	ENSMUSG00000050192	Eif5a2	9630038B20|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding	8.06019824629137	7.87028871231422	8.0419418834694	7.96965385009997	7.9252481597132	8.21916153016961	8.15180724820093	8.02335331405921	0.122011522497828	0.456562143719374	0.739917647952291
Merged-chr6-125165686-4	chr6	125165564	125165764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008084, exon 1 of 7)	5' UTR (NM_008084, exon 1 of 7)	109.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	7.94698956558569	8.04631180863052	7.74613908588953	7.95221993165516	8.33592662686432	8.21598110244168	8.38642283470195	8.20136969003209	0.45923194117552	0.00436456282852323	0.0429095604380463
Merged-chr17-48320348-3	chr17	48320204	48320404	+	842.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177083, intron 3 of 5)	intron (NM_177083, intron 3 of 5)	4142.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	3.30356688591064	3.07545184780323	3.55357747456112	2.63373571420429	3.25181257764395	3.1079708424046	3.23462780997145	3.24590475183225	0.0908093494134246	0.889344113765219	0.958519732455951
Merged-chr3-89437566-4	chr3	89437445	89437645	+	911.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146131, intron 1 of 10)	intron (NM_146131, intron 1 of 10)	841.0	NM_146131	229534.0	Mm.65906	NM_146131	ENSMUSG00000042613	Pbxip1	4732463H20Rik	pre B cell leukemia transcription factor interacting protein 1	protein-coding	4.03285717404128	4.11284949817286	3.75936380181819	3.59385263592201	4.04102233751148	4.25600602531049	4.28055952114301	4.48437468819175	1.02406267868182	0.0210957986327777	0.132657900817307
Merged-chr4-34687329-4	chr4	34687233	34687433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011895, exon 1 of 8)	5' UTR (NM_011895, exon 1 of 8)	105.0	NM_011895	24060.0	Mm.281885	NM_011895	ENSMUSG00000028293	Slc35a1	AA408150|AI314851	solute carrier family 35 (CMP-sialic acid transporter), member 1	protein-coding	7.49464815151546	7.68076518651905	7.87285969436618	7.80066961787852	7.50319070397929	7.67338472802997	7.74713159331068	7.53766331328486	-0.142382080895959	0.426656896671658	0.718096314776002
Merged-chr11-105589511-4	chr11	105589431	105589631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181071)	promoter-TSS (NM_181071)	-455.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	6.67302828213698	6.6781036915307	6.39641871426017	6.19024249011605	6.68475485815541	6.86419460534379	6.38174322216988	6.54640109056853	0.208356471261873	0.383918464534813	0.685555904565125
Merged-chr8-126695065-4	chr8	126694986	126695186	+	814.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101650.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	3.95217063826219	3.52353675895059	3.41213306281487	3.59633466499139	3.97735269801896	3.82994459145337	3.58520040731799	4.03546089028007	0.69945714221673	0.153267715322868	0.437831308302219
Merged-chr8-35725887-3	chr8	35725782	35725982	+	753.888916	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	100677.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	4.08745243888361	3.83993926415225	3.78523349326772	4.27860048519124	4.05330879158929	4.01518695901534	3.97798968460504	4.03986766005867	-0.0224019444107606	0.959772935383015	0.985625544893058
Merged-chr2-35979833-4	chr2	35979735	35979935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029774)	promoter-TSS (NM_029774)	-211.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	6.60276001710738	6.84788599187988	6.94587848430059	6.89724995078376	7.24231953059541	7.3258651064246	7.1247278439315	6.90130511320344	0.448989657982487	0.0275898234547881	0.158461715782164
Merged-chr19-29501633-3	chr19	29501561	29501761	+	749.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20326.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	3.76699307247052	3.84231753546709	3.81975506464284	3.44134593032107	4.0083475768866	3.71570255737502	3.85341841854719	4.13281243764986	0.655651404770256	0.161231459859316	0.449940309725276
Merged-chr11-61749423-4	chr11	61749312	61749512	+	858.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144806, intron 5 of 11)	intron (NM_144806, intron 5 of 11)	12676.0	NM_144806	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	4.23398638970998	4.24923203735259	4.18907046766198	4.51679591011554	4.27534722513469	3.99769800339251	4.12434901998581	4.31839021029085	-0.318330623815993	0.434942271659019	0.724164486314175
Merged-chr18-75819181-2	chr18	75819082	75819282	+	814.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145356)	promoter-TSS (NM_145356)	-996.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	2.63270387556886	2.75266386373988	2.70461282210322	2.65821098767748	3.00744344794385	3.01010496084218	3.29303053262364	3.01726964687324	1.85112239624326	0.0026832362903534	0.0292929564280774
Merged-chr13-119310195-4	chr13	119310102	119310302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98809.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	6.35970553085579	5.7981534419069	6.15030741600763	6.50954569939026	6.66812844153475	6.36777441427213	6.37974042942484	6.0818941792673	0.233708572917865	0.387391598324145	0.688269639745259
Merged-chr15-102510353-4	chr15	102510251	102510451	+	925.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163643, intron 1 of 15)	MIRb|SINE|MIR	349.0	NM_001358844	26404.0	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	4.94229049320796	4.65859330441373	4.97492257409306	4.59968599012576	4.67971187302882	4.56683319196305	4.55069490921499	4.90715076640558	-0.22155144937492	0.534085960222296	0.789066961676578
Merged-chr10-62491067-3	chr10	62490985	62491185	+	822.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4280.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	3.5543042614303	3.42027851165067	3.50330792643273	3.45813149081401	3.49419136516498	3.44701053933135	3.38088775786234	3.33317071478333	-0.217770913378933	0.663020010035579	0.860346663968351
Merged-chr16-57526721-3	chr16	57526628	57526828	+	738.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	ID_B1|SINE|B4	-22514.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	3.36885361632007	3.34252505535582	3.61950591881006	3.71534099914185	3.27396771702458	3.09523637329913	3.11709317784391	3.19019165521329	-1.3039361738238	0.0211804801666561	0.132957526923222
Merged-chr2-142606183-3	chr2	142606082	142606282	+	765.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	295282.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	3.65734636281068	3.93270661137187	3.4184973097366	3.92224207612786	3.88583922637477	3.59731710226876	3.69665068651333	3.81008111479743	-0.0128983126051362	0.979165315050159	0.992606608380485
Merged-chr12-72844422-4	chr12	72844334	72844534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73331.0	NM_029444	75801.0	Mm.242892	NM_029444	ENSMUSG00000021098	4930447C04Rik	4921504I02Rik|A930035O15Rik|Six6OS|Six6as|Six6os1	RIKEN cDNA 4930447C04 gene	protein-coding	8.14974676605516	8.1873489763519	8.39759689617383	8.53797057807865	8.42155086283372	8.34761874159676	8.4534004958176	8.26638707877885	0.0507150911920431	0.762519142843907	0.906975368428852
Merged-chr6-17281727-4	chr6	17281593	17281793	+	947.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016900, intron 1 of 2)	intron (NM_016900, intron 1 of 2)	508.0	NM_016900	12390.0	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	4.60620819515582	4.22747689236765	4.49399838448127	4.44595675248052	4.29016443736624	4.31011318879396	4.11525262940833	4.60388305368741	-0.251858250753252	0.520911091794998	0.781067630728995
Merged-chr7-19628738-4	chr7	19628652	19628852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290457, intron 1 of 10)	intron (NM_001290457, intron 1 of 10)	686.0	NM_001290457	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	9.34725479424868	9.55046958502822	9.44675703475763	9.17987371581519	9.45004515338243	9.73319577178894	9.51401672725851	9.31143534017236	0.152802211910804	0.344688212013131	0.653182920489211
Merged-chr2-118490359-4	chr2	118490252	118490452	+	892.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10656.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	4.44880231863598	4.70497419155267	4.20261481218667	4.41977191770891	4.66861934984148	5.10006657068941	4.51578470667813	4.72859320734413	0.667100127693021	0.0778145938939868	0.301658982136941
Merged-chr7-141525467-4	chr7	141525361	141525561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026522, intron 7 of 10)	intron (NM_026522, intron 7 of 10)	14396.0	NM_026522	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	5.71728284240446	5.69512383738799	5.60892385160786	6.0480015710919	6.21024744337311	5.66915495721103	6.10655649418061	6.03614195059863	0.368440897244701	0.178169610578797	0.473878436267402
Merged-chr3-89389239-4	chr3	89389086	89389286	+	985.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009565, intron 1 of 2)	intron (NM_009565, intron 1 of 2)	-1515.0	NM_001355206	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	4.71266458221204	4.76903347328188	4.51980658967999	4.45284753416777	4.65243669794231	4.69286956464221	4.27366099649069	4.47446717624242	-0.164521540677196	0.657604104955021	0.857407726161222
Merged-chr19-6273971-4	chr19	6273871	6274071	+	997.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2925.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	6.04127333369308	6.69681012701488	5.7454612760302	4.90262846379304	6.19732049916353	6.33426938133116	5.63677129658929	5.08982615468978	-0.179046230916537	0.79499151288055	0.92069281162566
Merged-chr7-99124092-4	chr7	99124001	99124201	+	915.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	RLTR11A|LTR|ERVK	17043.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	3.61699322264809	3.76375703226426	3.61746071783314	3.65709638217256	4.07258396449687	3.73500864193752	4.03377768236598	3.61556993885439	0.645838400474526	0.165826616470765	0.456772663351364
Merged-chr16-76408380-4	chr16	76408278	76408478	+	983.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-34551.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	4.63578284708967	4.82079584278253	4.98301410637486	5.17574091418794	5.00179989746959	5.08657064734659	4.81757906267979	4.9455000583112	0.0542045586326039	0.872903342132143	0.952341117683231
Merged-chr18-20746356-4	chr18	20746257	20746457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019737)	promoter-TSS (NM_019737)	47.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	6.99173020978052	7.17027332863806	7.31101486169818	7.32148608763052	6.96470706366984	6.96017648972523	7.41562039244671	7.05092161798337	-0.138681064735398	0.501914009718776	0.769448365511349
Merged-chr9-122886902-4	chr9	122886816	122887016	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1555.0	NM_001177505	382118.0	Mm.86999	NM_001177505	ENSMUSG00000063488	Zkscan7	BC042569|Zfp167	zinc finger with KRAB and SCAN domains 7	protein-coding	4.80906547753166	4.69545698396317	4.47421609278395	4.68493726944946	4.71402810681576	5.05368511907674	5.10816082112397	4.91281266934586	0.561828665199964	0.0976586240896446	0.342493259956485
Merged-chr4-141793589-4	chr4	141793491	141793691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015733)	promoter-TSS (NM_015733)	-21.0	NM_015733	12371.0	Mm.88829	NM_015733	ENSMUSG00000028914	Casp9	AI115399|APAF-3|AW493809|CASP-9|Caspase-9|ICE-LAP6|Mch6	caspase 9	protein-coding	8.26912816556466	8.79555715285882	8.19228843306257	8.10918839872514	8.46926184940185	8.67684017005563	8.59265959224176	8.24743921992069	0.170992151034992	0.403120252638535	0.700638534342803
Merged-chr8-46770116-4	chr8	46770011	46770211	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	30366.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	4.69284895411141	4.4549258829934	4.53695553398791	4.82380140312886	4.63031805876927	4.38752215300664	4.80938667606641	4.44802997573277	-0.138882608805594	0.707263889534337	0.882414568664592
Merged-chr6-5583172-4	chr6	5583097	5583297	+	813.604126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86919.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	4.1240417092853	4.37987301676357	4.12463564367754	4.11344536976362	4.60581050227851	4.25010790289446	4.37518887003971	4.35132078637845	0.541734739227276	0.165176331878637	0.455772085768736
Merged-chr1-156672923-4	chr1	156672802	156673002	+	963.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023141, intron 2 of 5)	RMER17C|LTR|ERVK	1437.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	5.84319978219828	5.26628617235315	5.44435582708743	5.73030678486425	5.37182798418885	5.16260032064045	5.24001128657791	4.93826171993453	-0.709462534542172	0.0234225906000268	0.142046227853737
Merged-chr10-60260309-4	chr10	60260216	60260416	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17312.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	4.74621586636626	4.16337297707744	5.15073353776299	4.79484125175216	4.62229152327845	4.80158559909651	5.12466313806149	5.25709570124897	0.430410095151702	0.291346781428822	0.603649431079994
Merged-chr16-32572739-3	chr16	32572663	32572863	+	756.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36133.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	3.40569617341535	3.4649767771885	3.46067686474418	3.26389806877902	3.27492682907278	3.52090217562464	3.21659381631582	3.51091229759432	-0.0372382523278309	0.943074494194709	0.97939909270739
Merged-chr11-121237115-4	chr11	121236990	121237190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026272)	promoter-TSS (NM_026272)	-146.0	NM_026272	67608.0	Mm.291832	NM_026272	ENSMUSG00000000056	Narf	4430402O11Rik	nuclear prelamin A recognition factor	protein-coding	8.13551093810001	8.24251702635341	7.86492999685433	7.93970120897536	8.41094143897698	8.28921714719029	8.37710100744654	8.31190272657745	0.380359187173478	0.0210220260585347	0.132406582852884
Merged-chr2-164941234-4	chr2	164941119	164941319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-7000.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	6.11482494482535	6.07566742169321	5.93724940743801	6.1406612394224	6.33036095242222	6.24978560524229	6.39504831622206	6.30420295475967	0.37336003967307	0.0945255242330828	0.336389933257874
Merged-chr8-68735191-3	chr8	68735123	68735323	+	849.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252623)	promoter-TSS (NM_001252623)	-77.0	NM_172753	234356.0	Mm.334569	NM_172753	ENSMUSG00000036356	Csgalnact1	4732435N03Rik|CSGalNAcT-1	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding	3.69751898273813	3.36810693476419	3.60256515239145	3.49651379761296	3.04784953946773	3.24159860397902	3.43076986592863	3.64897111241036	-0.641407991410413	0.248871147282924	0.560091027834067
Merged-chr11-61267251-4	chr11	61267119	61267319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007437)	promoter-TSS (NM_007437)	-33.0	NM_007437	11671.0	Mm.398221	NM_007437	ENSMUSG00000010025	Aldh3a2	AI194803|Ahd-3|Ahd-3r|Ahd3|Ahd3-r|Aldh4|Aldh4-r|FALDH	aldehyde dehydrogenase family 3, subfamily A2	protein-coding	7.75423704474087	7.68955704694144	7.18364770183701	7.49792156009093	7.70082077270748	7.61203830534023	7.4076089711762	7.75788657047723	0.103837100059257	0.601218606545927	0.827071740947179
Merged-chr19-34148680-4	chr19	34148590	34148790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024204, intron 2 of 5)	intron (NM_024204, intron 2 of 5)	17351.0	NM_024204	52024.0	Mm.183030	NM_024204	ENSMUSG00000024774	Ankrd22	5430429D21Rik|D19Ertd675e	ankyrin repeat domain 22	protein-coding	5.23507191170443	5.24967861292218	5.50845973854494	5.5047674465649	5.11231212148282	4.71104943478721	5.01452658827707	5.1044784377963	-0.717131035435086	0.0219674117964738	0.136393789625018
Merged-chr17-57275224-4	chr17	57275154	57275354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3846.0	NM_001163816	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	5.45740062414293	5.45972323864652	5.21587944619906	5.56670351617962	5.17368871710953	5.48718584489948	5.40332307137326	5.48178739437274	-0.107180145416305	0.709680909284917	0.883704992355642
Merged-chr1-120072273-4	chr1	120072198	120072398	+	926.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019432, intron 1 of 1)	C-rich|Low_complexity|Low_complexity	1482.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	4.63686118796913	4.43114578661642	4.07373228539032	4.43462851675153	4.49561274606849	4.61957404314596	4.11003029146044	4.22483681946966	-0.0692889559226569	0.865253147146082	0.949535988663619
Merged-chr14-26487158-4	chr14	26487056	26487256	+	735.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 1 of 22)	intron (NM_001310445, intron 1 of 22)	47468.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	4.30395645077212	4.22739707450862	3.81454116955942	4.1305299585968	4.34470333379474	4.25518112332865	3.91289983337246	4.17354205089596	0.137308454101431	0.747794390542641	0.90068822490119
Merged-chr1-24099923-2	chr1	24099823	24100023	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026604, intron 1 of 20)	CpG	418.0	NM_026604	68187.0	Mm.87130	NM_026604	ENSMUSG00000026153	Fam135a	4921533L14Rik|AI256732|AI835491	family with sequence similarity 135, member A	protein-coding	4.99911186673186	4.77757184674129	5.40557144455984	5.38863459034639	4.77607281371659	5.21275527914047	5.29608188567268	5.55219860673077	0.100954861455941	0.778595256079591	0.913781420202775
Merged-chr6-29245945-4	chr6	29245844	29246044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26544.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	8.47672043875338	8.79769384838361	8.91237147697512	8.82690644566202	8.60788512811332	8.68631003177926	8.84675517669546	8.43609182745227	-0.142011489565876	0.407218219394136	0.703586879884121
Merged-chr15-6522960-4	chr15	6522882	6523082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56865.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	6.04808107410904	5.8149446197029	6.56191393783359	5.54825416533647	5.48925697345171	5.88688344393152	5.62798118921054	5.44824646477606	-0.677923955506744	0.0358675877749937	0.188108603205941
Merged-chr15-58076302-1	chr15	58076202	58076402	+	1000.0	f0_c57.idr	5' UTR (NM_001042438, exon 1 of 5)	5' UTR (NM_001042438, exon 1 of 5)	206.0	NM_001042438	22770.0	Mm.244931	NM_009572	ENSMUSG00000022361	Zhx1	-	zinc fingers and homeoboxes 1	protein-coding	7.28948836638455	7.50358789980357	7.52433813406314	6.93899425567065	7.26096199239514	7.7275428108402	7.26497417297601	7.5191468109694	0.172229047133163	0.43661619856049	0.725204284252045
Merged-chr6-67168918-3	chr6	67168818	67169018	+	904.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25B|LTR|ERVK	-98061.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	3.72483265624839	4.00012217997412	3.83113834756868	4.06137248862653	3.46075997610775	3.89923331491299	3.76410981841419	3.97266033533999	-0.404484719561359	0.397674653390309	0.695998272762507
Merged-chr1-39511989-4	chr1	39511871	39512071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER92D|LTR|ERV1	-23730.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	5.58915405159495	6.05354920443634	6.38772707430032	6.05851624297986	5.63987310323044	6.07558947250893	5.77540615212593	5.72447408226464	-0.392624096847984	0.163608577443992	0.453373353678186
Merged-chr9-53633639-4	chr9	53633553	53633753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161618, intron 9 of 17)	intron (NM_001161618, intron 9 of 17)	-23303.0	NM_144784	110446.0	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	5.82948555772642	5.69045178327466	6.37254522713247	6.12972718666457	6.20669323918731	5.84976370712914	6.22085291536023	6.0339238321209	0.0886770233316139	0.742386560322743	0.898494026733066
Merged-chr5-45497739-4	chr5	45497629	45497829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024434, intron 4 of 12)	intron (NM_024434, intron 4 of 12)	4355.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	5.58668064560343	5.40135298605988	6.33524255444861	6.13892780037464	5.65324974854492	5.49247220332447	5.53171777374081	5.46836718283973	-0.636884682037336	0.044646193210907	0.215741438327166
Merged-chr6-86579463-4	chr6	86579365	86579565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48709.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	6.51698148377457	6.33504738796877	6.26206056540779	5.97291292515702	6.50370774900631	6.06956028546591	6.21101445151841	6.27636508354442	0.0213611454108873	0.932151147179754	0.975507553379482
Merged-chr1-39784720-6	chr1	39784608	39784808	+	879.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20624.0	NM_001177348	100042065.0	Mm.209678	NM_001177348	ENSMUSG00000091937	Gm3646	-	predicted gene 3646	protein-coding	4.34077043153065	4.2376325463286	4.46567924250864	4.35553190984138	4.11676249432641	4.51326774859615	4.18589781235543	4.5015485718984	-0.0442168082445052	0.910149672356991	0.966671146059764
Merged-chr19-60588865-1	chr19	60588765	60588965	+	939.5	f0_c57.idr	Intergenic	RLTR45|LTR|ERVK	-7842.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	3.09354029992021	3.14999080061194	3.25356221832588	2.8006035569216	4.2678044139544	4.09034976634676	4.25999129749705	4.3147779610728	4.10091847493718	3.07616667305164e-14	4.43235764415269e-12
Merged-chr10-99199712-4	chr10	99199585	99199785	+	940.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63546.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	4.14143791493326	4.23857434583594	4.18787457537238	4.1008972267107	4.39293086287652	4.16899395887621	4.25543076950968	3.82509212507827	0.0562998702140242	0.893041738245303	0.960049204611959
Merged-chr11-69012036-2	chr11	69011936	69012136	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19|LTR|ERVK	-3576.0	NM_001159519	237823.0	Mm.340288	NM_001159519	ENSMUSG00000020899	Pfas	4432409B16Rik|FGAMS|FGAR-AT|FGARAT|Gm18|PURL|Sofa	phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)	protein-coding	2.52314330717123	2.43385314194714	2.58589199832628	2.12619887474164	2.20949617536385	2.63173033799831	2.38133925114569	2.45673431523975	0.0050509384752067	0.994748459602338	0.998113036482228
Merged-chr1-64738908-3	chr1	64738817	64739017	+	794.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1167.0	NM_022721	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	4.18579240473114	3.96923156422365	4.554726422298	3.93118307931488	3.66695192463955	3.78840590797728	3.98533235572934	4.09523844609565	-0.767649717509999	0.103597230353469	0.353670338262288
Merged-chr7-25813757-4	chr7	25813607	25813807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028775, intron 2 of 8)	L2c|LINE|L2	2823.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	4.4289745065662	4.74422627082996	4.56631164265947	4.52538402917417	4.90333051026532	4.74274751892101	4.70640915940728	5.19658244042838	0.694701857553265	0.0470609592875521	0.22315315576102
Merged-chr7-139412593-3	chr7	139412483	139412683	+	945.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355162, intron 1 of 15)	intron (NM_001355162, intron 1 of 15)	12089.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	3.53808209256191	3.63365392551409	3.48203662788264	4.02516741471691	3.29371469666841	3.40948000616511	3.77197466628667	3.42127148034783	-0.702149742032387	0.1949846559581	0.495709083262081
Merged-chr8-85559356-4	chr8	85559267	85559467	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-4096.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	4.61275666289338	4.61933897839015	4.3943232130248	4.77796779253466	4.69917696825063	4.82517112482705	4.59225924431577	4.76214613626285	0.205362555702618	0.559537163493499	0.80390920198861
Merged-chr5-113910227-4	chr5	113910121	113910321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1515.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	6.52707857457707	6.61926352250212	6.04751737335099	6.3091598084489	6.42148342505003	6.55156011842205	6.49485005312265	6.507487861011	0.145898619844905	0.526202463164607	0.783568247232079
Merged-chr12-111016985-4	chr12	111016872	111017072	+	942.2625119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22574.0	NR_036598	77878.0	Mm.293198	NR_036598	ENSMUSG00000113056	6030440G07Rik	-	RIKEN cDNA 6030440G07 gene	ncRNA	5.21955462759967	4.84445712495858	4.23482094037067	4.37111868001143	4.76526826841013	5.02856732259886	4.60270791901174	4.98587984476073	0.276436843743002	0.504125140235133	0.770626277304553
Merged-chr10-80509742-4	chr10	80509649	80509849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139226, intron 1 of 1)	intron (NM_139226, intron 1 of 1)	14843.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	5.07496807972536	5.18859978010169	5.54163095401796	5.02505268787452	5.3078152595137	5.41425889612155	5.15201595536829	5.32713974738565	0.171474225258652	0.575951701712137	0.813293117546535
Merged-chr8-40308572-1	chr8	40308472	40308672	+	1000.0	f1_c57bl6.idr	promoter-TSS (NR_106126)	promoter-TSS (NR_106126)	521.0	NM_030110	78506.0	Mm.169893	NM_030110	ENSMUSG00000039478	Micu3	2900075B16Rik|Efha2	mitochondrial calcium uptake family, member 3	protein-coding	4.89954771266187	4.58522553162094	5.13064819304596	4.5383011352569	4.42117772262179	4.33116737903129	4.42884648880909	4.44601678247737	-0.860234285781903	0.025799832086099	0.15167399970538
Merged-chr17-35164988-4	chr17	35164875	35165075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020027)	promoter-TSS (NM_020027)	-98.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	8.54036126045695	8.73526537354799	8.13826947462932	8.16079931619795	8.42309867613361	8.6526924947352	8.0338281570992	8.31237562001523	-0.0540465102209436	0.796461156239868	0.921160807130199
Merged-chr12-36215300-1	chr12	36215200	36215400	+	846.0	f0_balb.idr	intron (NM_001361098, intron 5 of 8)	intron (NM_001361098, intron 5 of 8)	2918.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	3.51806465066096	3.17926337287611	3.62528162196301	3.74724179026673	3.34394793307423	3.51723244074323	3.61017199517528	3.81267085016986	0.116562873023884	0.828786677096022	0.934278402474071
Merged-chr16-91021264-4	chr16	91021174	91021374	+	951.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152264, intron 15 of 17)	intron (NR_152264, intron 15 of 17)	-9966.0	NM_001164483	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	5.12577456078467	5.00375556363314	5.02935593198011	5.42374099109007	4.92575058498445	4.81888505048034	5.13198454945285	4.72358628165586	-0.51067183851382	0.124748079643251	0.392131450639886
Merged-chr18-61211021-4	chr18	61210936	61211136	+	971.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007885, intron 1 of 3)	intron (NM_007885, intron 1 of 3)	560.0	NM_007885	13521.0	Mm.24803	NM_007885	ENSMUSG00000034320	Slc26a2	Dtd|ST-OB	solute carrier family 26 (sulfate transporter), member 2	protein-coding	4.83442964743571	4.51528510237862	4.49879468187657	4.65959175274082	5.14244897646819	5.08033282753598	5.26867492089833	4.83199301347124	0.919177748564876	0.00589606096303102	0.0535915534839901
Merged-chr4-142015253-5	chr4	142015128	142015328	+	984.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2670.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	4.0732323127614	3.99251996465797	4.07384101093165	4.01352946103451	3.98478821830021	4.24430261113654	4.05623556939882	4.02381992917672	0.105584421757471	0.796700331872811	0.921337659177495
Merged-chr16-38403845-4	chr16	38403733	38403933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134102, intron 8 of 10)	intron (NM_134102, intron 8 of 10)	29312.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	6.89660286253466	7.0650777542014	6.54331951944047	6.71891066911448	6.32116129360637	6.2527633302585	6.40794337671372	6.4184352383189	-0.679251641823624	0.00241287936621089	0.0270083881754246
Merged-chr15-59739338-4	chr15	59739221	59739421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55638.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	6.16558862450388	6.31480131105811	5.78677442041093	6.17448673680823	6.16973772327876	6.11043121495684	5.7831530307472	5.97553135039479	-0.167078217714855	0.511143244603308	0.775198670343823
Merged-chr5-125137275-4	chr5	125137172	125137372	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 1 of 46)	intron (NM_011424, intron 1 of 46)	41942.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	5.58619913965723	5.62324222935191	5.61009621283429	5.75662483768372	4.6579935899042	4.51034574781987	4.66182447240087	4.63322883688429	-2.00081764906492	4.42527757228036e-10	3.03163457475788e-08
Merged-chr9-114770430-4	chr9	114770321	114770521	+	907.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252479, intron 1 of 3)	intron (NM_001252479, intron 1 of 3)	11572.0	NM_133978	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	4.94450321679965	4.65994658816562	5.06821082792391	4.8323804160699	4.36981041025412	4.56810793219853	4.55184370587632	4.90927080550589	-0.576417126754184	0.112129352635985	0.37008731524057
Merged-chr4-9612035-4	chr4	9611936	9612136	+	960.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 3 of 22)	intron (NM_001290367, intron 3 of 22)	31681.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	4.90384025493618	4.85119144025773	4.90464575927485	5.4762753480342	5.15155755404851	4.7448146991553	5.53808591859856	4.90138786396641	0.078934638874717	0.834581935188299	0.936938434534138
Merged-chr11-26600850-4	chr11	26600756	26600956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6936.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	5.85788363219735	5.44105253682994	5.99393095478986	5.95208679093032	6.16718271522932	5.77497114444242	6.19489956088494	6.03157822398351	0.357151201241792	0.182321560628852	0.47878218634963
Merged-chr1-179847938-4	chr1	179847835	179848035	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43920.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	5.07205102739151	5.23480867657062	5.2386653335942	5.27144140562183	5.17353755997961	5.24904184050078	5.5836565809137	5.17137954424809	0.163432999713351	0.584427884499564	0.817606328559808
Merged-chr2-132710694-4	chr2	132710576	132710776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028637, intron 2 of 2)	intron (NM_028637, intron 2 of 2)	20078.0	NM_028637	73747.0	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	5.99916021598824	6.05950461472889	6.28159343216752	6.33037444284492	5.70771835405406	5.43319024190019	5.68954739088928	5.60490922003684	-0.907612581347796	0.0004106646993257	0.00657608608173318
Merged-chr19-55876676-4	chr19	55876592	55876792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-18629.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	6.16144853236457	5.65368387210817	6.52057111610746	6.36792696144514	5.4483779679046	5.78202727120985	5.65827528162983	5.97583609046181	-0.78575201777754	0.00811485707010311	0.0678659865342344
Merged-chr4-62641054-4	chr4	62640838	62641038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019492, intron 17 of 19)	intron (NM_019492, intron 17 of 19)	21266.0	NM_134257	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	3.82039395228908	4.18040890555773	4.12674850851311	4.01384263577686	3.79398506561176	3.99942182365095	4.31495699198648	4.2936592309811	0.183128132016797	0.678488618230246	0.868112820688421
Merged-chr7-99268407-2	chr7	99268307	99268507	+	701.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001043355)	promoter-TSS (NM_001043355)	61.0	NM_001043355	17760.0	Mm.154087	NM_010837	ENSMUSG00000055407	Map6	2810411E12Rik|Map-6|Mtap6|STOP	microtubule-associated protein 6	protein-coding	2.88438482790442	2.99766646303781	3.32854102593115	3.05073645871788	3.57699670921141	3.32902263639866	3.31488682319325	3.2144509390203	1.11110108661242	0.0505357699627904	0.233168183715658
Merged-chr18-68180936-1	chr18	68180836	68181036	+	890.3333130000001	f0_balb.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-47010.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	3.57573391967657	2.96044946606048	3.44315745087845	3.42899511594742	2.66537278133494	2.81608357531161	2.98900091875656	2.85932132974472	-2.45014687778315	0.000487951557334914	0.00758172973139966
Merged-chr19-53479666-3	chr19	53479556	53479756	+	865.0888669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-14860.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	4.35306571439213	4.00972189195303	4.62738995739597	4.66349900384	3.51322650709226	3.7199857034253	3.64959784922866	3.66109278544571	-2.34484062840777	2.24868294687966e-06	7.25562119111276e-05
Merged-chr2-120291797-4	chr2	120291697	120291897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2728.0	NM_001024137	78390.0	Mm.330507	NM_001024137	ENSMUSG00000070719	Pla2g4d	2610311B01Rik|Pla2delta|cPLA2delta	phospholipase A2, group IVD	protein-coding	6.52475040486288	6.1998890357346	6.6873282634243	6.95890946077756	6.99898030318935	6.47977162991337	7.01706057443906	7.00164801030476	0.370019271481569	0.146382904453227	0.426622491137043
Merged-chr13-29983164-3	chr13	29983081	29983281	+	596.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010093, intron 1 of 6)	intron (NM_010093, intron 1 of 6)	1210.0	NM_001289920	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	3.32938783987465	3.46032895726886	3.49983584504846	3.37097351716491	3.34386373421815	3.56040257931577	3.48574860919176	3.49786569461614	0.188961931734463	0.704689604727943	0.881357466001362
Merged-chr15-77805869-4	chr15	77805848	77806048	+	935.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	36227.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	5.01191805237451	4.66434626565575	4.53336123873233	4.48416850380414	4.95950012718949	5.0205182927561	4.63935393768196	4.65796737418594	0.326566449561626	0.366595377032219	0.670971624328495
Merged-chr6-88306884-3	chr6	88306797	88306997	+	775.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149744, intron 3 of 5)	intron (NR_149744, intron 3 of 5)	84629.0	NM_019964	56691.0	Mm.272871	NM_019964	ENSMUSG00000048206	Dnajb8	1700016F14Rik|1700031F10Rik|AI326313|mDj6	DnaJ heat shock protein family (Hsp40) member B8	protein-coding	3.51755429816677	3.43301599502633	3.46330374014712	3.40247928472517	3.2928737640694	3.83581395298289	3.39337015260416	3.40436596729149	0.135894303437093	0.792897986994918	0.919794745942914
Merged-chr5-28094095-3	chr5	28094020	28094220	+	838.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22708.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	3.32164796122976	3.32508342779533	3.60822202895144	3.26739213012924	3.72171634546452	3.61768003880959	3.64285792024386	3.65638890765246	0.940571831084986	0.0545538976657473	0.243882168191825
Merged-chr7-38064692-2	chr7	38064593	38064793	+	598.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	42797.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	3.33288079402721	3.44848950663003	3.3897377148675	3.34111753624858	3.51775317003372	3.18912279047567	3.57749159541435	3.14636950287319	0.00439606430036007	0.993474365373317	0.997702270136287
Merged-chr11-78712797-4	chr11	78712699	78712899	+	945.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-15374.0	NM_008702	18099.0	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	4.24539293203568	4.8511178961566	4.29871070242755	4.68799548046475	4.7759190606068	4.62323185213219	4.94626032869563	4.93648300761442	0.560830540869651	0.140755569562644	0.41732231461186
Merged-chr7-141048981-4	chr7	141048882	141049082	+	808.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	-12292.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	3.66080320198681	3.75139707766192	3.71504632775461	3.65257768731467	3.68863853834013	3.83337088077146	3.8002332792725	3.86170889195181	0.301963316741132	0.500846568217936	0.769017904448726
Merged-chr2-45114725-4	chr2	45114604	45114804	+	959.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_110572)	TTS (NR_110572)	-1425.0	NM_015753	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	4.16387461154879	4.63259804219801	4.54338410170723	3.94119407664927	4.27581534379249	4.51873379661794	4.19404950322652	3.95060772490852	-0.225147677427131	0.615524947239587	0.834477192020031
Merged-chr11-109480043-4	chr11	109479956	109480156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028710, intron 1 of 13)	intron (NM_028710, intron 1 of 13)	-5836.0	NM_001361975	74008.0	Mm.482224	NM_028710	ENSMUSG00000020604	Arsg	6330406P08Rik|AI846872|ASG	arylsulfatase G	protein-coding	5.84480280545762	5.75369274635287	6.09845259992818	5.69576100264918	5.91273827407068	5.64772837695168	5.8837403003675	5.84167463531465	-0.0203803833143524	0.937108111107835	0.977210490892393
Merged-chr11-69682950-4	chr11	69682850	69683050	+	990.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163571)	promoter-TSS (NM_001163571)	-866.0	NM_001163571	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	4.87116930318135	4.73060473386997	4.04304039518696	3.76198071253174	4.69429168524153	5.10496478489973	4.39110183379812	4.69641662246324	0.668515842544466	0.164002302754531	0.453904654629629
Merged-chr9-103181186-4	chr9	103181050	103181250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173781, intron 7 of 7)	intron (NM_173781, intron 7 of 7)	20915.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	5.84449053661665	6.24682676138971	5.96283880804845	6.12465250673173	6.07330721885537	5.81128408782403	6.29698284327341	5.7654787972687	-0.0806216689450748	0.757424206083226	0.904696898321888
Merged-chr19-16139386-2	chr19	16139286	16139486	+	695.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	6555.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	2.90152562286989	2.87640584289012	3.25881983644019	2.84879626188901	3.0368455892004	3.20448284394405	3.0210405757331	3.25685213620965	0.639429538800021	0.277438708935522	0.589574857839125
Merged-chr5-110102099-4	chr5	110102000	110102200	+	967.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281812, intron 4 of 6)	intron (NM_001281812, intron 4 of 6)	1541.0	NM_001281812	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	4.54847016524233	4.96548011239933	4.6845333935404	4.99485772886063	5.08444182453009	5.09328576162763	4.82282971216011	5.36273361713681	0.53797132982644	0.119940299288036	0.383368384885854
Merged-chr8-72485986-3	chr8	72485892	72486092	+	971.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177766, intron 4 of 5)	intron (NM_177766, intron 4 of 5)	6622.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	3.25142589925785	3.00535980476553	3.32632251926475	2.74644466050354	3.99554677593465	4.2265793325229	4.29913265804329	4.38697344608285	4.08841541713294	6.26873082341996e-13	6.95018678006556e-11
Merged-chr3-109196330-4	chr3	109196220	109196420	+	892.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73171.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	3.67455412741156	4.06444944188901	3.84480261659535	3.64352543108826	4.14290429379332	4.25519543851575	3.88063079547635	3.99272273675932	0.729807107681735	0.102148474467297	0.350840873581727
Merged-chr5-134639472-4	chr5	134639394	134639594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001312867)	promoter-TSS (NM_001312867)	-85.0	NM_033561	22384.0	Mm.27955	NM_033561	ENSMUSG00000040731	Eif4h	AU018978|D5Ertd355e|E430026L18Rik|Ef4h|Wbscr1|Wscr1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding	7.43270769703806	7.70086660019654	7.07079375113041	7.16097225376633	7.31472755718043	7.57225230093473	7.63089436872432	7.19883792223807	0.101529379279688	0.643432411595619	0.849653555923874
Merged-chr10-100015796-4	chr10	100015685	100015885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013598)	promoter-TSS (NM_013598)	-36.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	6.2244769368927	6.07613057274839	5.68863329076121	6.32784531214109	6.03556892567135	6.24553101427198	5.99788780794639	5.53765239888942	-0.208885346295947	0.460594966089063	0.742687499720882
Merged-chr1-131548730-4	chr1	131548616	131548816	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20813.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	4.8396015538381	5.29708620490874	5.11879450796649	5.36518077920654	4.78771825002513	4.81039486492889	4.85561731665314	4.9838171226119	-0.641152230776077	0.0512265280634019	0.234908712860771
Merged-chr10-57571449-4	chr10	57571336	57571536	+	911.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38907.0	NM_019760	56442.0	Mm.29344	NM_019760	ENSMUSG00000019877	Serinc1	1500011D18Rik|AI315070|AIGP-2|TMS-2|Tde1l|Tde2|Tms2|mKIAA1253	serine incorporator 1	protein-coding	3.93001347832286	3.73419782950639	4.07452898940643	3.82780727253643	4.06389432518851	3.88922800925473	4.22416490598061	4.15952094663227	0.543439866410692	0.203613127680576	0.506588095185981
Merged-chr19-43674428-2	chr19	43674328	43674528	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045645)	promoter-TSS (NR_045645)	453.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	4.4501030577292	3.81617232851086	4.33607693175034	3.81485941035561	4.12208196440042	4.09210745966512	3.89705673364373	4.48378302452082	0.100954375668942	0.829956041317542	0.934690278259685
Merged-chr19-29393549-4	chr19	29393440	29393640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17379.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	6.31058063605873	6.25787422117777	6.4788978750373	6.138076832171	6.00525664846349	5.85522348682701	6.43002870054988	6.1349814991041	-0.258679037996428	0.298111991255953	0.610276486212467
Merged-chr14-31272455-1	chr14	31272355	31272555	+	807.5	f0_balb.idr	intron (NM_001033668, intron 53 of 77)	(CAAAA)n|Simple_repeat|Simple_repeat	20966.0	NM_027088	104416.0	Mm.3779	NM_027088	ENSMUSG00000021901	Bap1	2300006C11Rik|AA989761|AW553466|mKIAA0272|uch-x4	Brca1 associated protein 1	protein-coding	3.41484780405762	3.46409018355383	3.79413613034037	3.81178594199057	3.77837404208473	3.59139415337882	3.77769060298611	3.5334098721744	0.107019305354132	0.829960616949336	0.934690278259685
Merged-chr17-8225960-4	chr17	8225912	8226112	+	876.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10031.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	4.05856727678142	4.27167728294381	4.32307828266333	4.64269043575687	3.84768411569741	4.0266689490718	4.04184193375817	3.66206616656759	-1.2017811681218	0.007938337332335	0.066868983784411
Merged-chr8-70759207-4	chr8	70759141	70759341	+	801.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009001)	TTS (NM_009001)	1680.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	3.88634314475493	3.89721634818965	3.55997999314922	3.67882422144315	4.15892241286755	3.95722844175061	3.91754453846205	3.73064429357448	0.573510385446983	0.210161998207366	0.514589641224702
Merged-chr18-70482115-1	chr18	70482015	70482215	+	660.0	f0_balb.idr	intron (NM_001289650, intron 5 of 8)	intron (NM_001289650, intron 5 of 8)	9449.0	NM_001289650	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	3.38186278757234	3.11167010568336	3.06241133258792	3.27145418033749	2.99925776367822	2.9001321867734	2.92620786754396	3.06090462821301	-0.996384485361241	0.0924525654405597	0.332675673981982
Merged-chr11-16954285-4	chr11	16954182	16954382	+	811.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_176982, exon 4 of 4)	exon (NM_176982, exon 4 of 4)	2872.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	3.9156925854325	3.8097515271885	3.80962388523259	3.65054959616139	4.49946583469287	4.18650453922908	3.94948405504433	3.9139665561337	1.02901878324464	0.0213498167043715	0.133702147035057
Merged-chr11-70789479-4	chr11	70789372	70789572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23089.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	5.98903359101108	6.0497507906859	5.54078131411625	5.51977690048802	6.14476650146389	5.96099957285201	5.89514767867626	5.8055427811133	0.285429325970088	0.301847340609853	0.61407316386386
Merged-chr4-102607820-2	chr4	102607721	102607921	+	728.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177980)	TTS (NM_001177980)	17978.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	3.23416522158701	3.29140135346654	2.90524584165168	2.64948344650159	2.98257203616279	2.65592799770969	2.76516494630301	2.62743236346852	-1.21423123515931	0.0914225963258849	0.330444093656869
Merged-chr6-32183920-4	chr6	32183810	32184010	+	891.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 22 of 31)	intron (NM_175750, intron 22 of 31)	133622.0	NM_029587	76382.0	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	4.38805357349988	4.04365110938824	4.468109778307	4.88024879265217	4.2983785729942	3.75742550242932	4.04775676004263	4.34435071125464	-0.854004093367207	0.0702153682773938	0.283711381619926
Merged-chr17-46297391-2	chr17	46297291	46297491	+	929.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286028)	promoter-TSS (NM_001286028)	-92.0	NM_001286028	106565.0	Mm.23633	NM_134120	ENSMUSG00000047428	Dlk2	AI413481|DLK-2|Egfl9	delta like non-canonical Notch ligand 2	protein-coding	2.93424694887664	3.03503067344349	3.16147004364899	2.58815296321339	3.06893916658404	2.76678753447642	2.86143553067857	2.99358486717719	-0.0446026417950271	0.945769995132906	0.980637693555381
Merged-chr18-32391596-3	chr18	32391457	32391657	+	884.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	intron (NM_001360876, intron 1 of 17)	-13273.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	4.28806511208065	4.38867341905293	4.07210602858676	3.78837872453245	3.84531050906561	3.93355711149767	4.0067753706264	4.11593422790348	-0.448292667287961	0.322564901854797	0.634045774326241
Merged-chr1-97673031-4	chr1	97672931	97673131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11013.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	6.50977452085295	6.27653440713005	6.37596165022062	6.67819627625027	6.33317714294307	6.38142241457228	6.44538892711718	6.07145513725355	-0.245914198528227	0.291120932581485	0.603409826744053
Merged-chr9-95674690-3	chr9	95674566	95674766	+	688.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 3 of 8)	MTD|LTR|ERVL-MaLR	37038.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	3.48752532635107	3.42436995605644	3.94463841780367	3.80918090884086	3.42076345663268	3.66477563560638	3.96773781115482	3.60231632510433	-0.0369291270004085	0.943238549552261	0.979484670195936
Merged-chr14-30826732-4	chr14	30826641	30826841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028839, intron 1 of 7)	intron (NM_028839, intron 1 of 7)	1147.0	NM_028839	69179.0	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	5.87790783947796	6.26919741160566	5.90285815550158	5.67958547321096	6.44268122064655	6.05582710346203	6.14681012653149	5.94513961470723	0.359064634981649	0.182852390481751	0.479612717032116
Merged-chr17-29437409-4	chr17	29437306	29437506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-53639.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	8.18532078443128	8.13238596814148	8.24043574534927	7.70654646957215	8.50467993793697	8.43573643920946	8.79042518251099	8.25818082733322	0.557347354420105	0.00449600359129717	0.0439278559853066
Merged-chr11-109247089-4	chr11	109246990	109247190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165934, intron 12 of 16)	L1MB8|LINE|L1	51091.0	NM_001165934	19739.0	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	6.9351712067061	7.65158761438457	7.03771056691984	6.47973633352007	7.26444086541543	7.07373299254405	7.07278318455107	6.47631188313872	-0.11886168368524	0.685802578645267	0.871645121607619
Merged-chr7-45628895-4	chr7	45628787	45628987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028544, exon 3 of 12)	exon (NM_028544, exon 3 of 12)	1350.0	NM_028544	69903.0	Mm.181396	NM_028544	ENSMUSG00000044562	Rasip1	1110025D03Rik|2610025P08Rik|AI853551|Rain	Ras interacting protein 1	protein-coding	6.62921606690493	6.77691250802972	6.3949154977762	6.66348608022886	6.71208724631451	6.43658584224048	6.5178074911952	6.68552168978779	-0.0425181767119021	0.84325262903508	0.940459539910433
Merged-chr5-122059748-4	chr5	122059577	122059777	+	956.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9826.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	4.34103259661225	4.0006467025133	4.67972206002842	4.01572526262095	4.09143252842678	3.61660508515453	3.80666374866129	4.03305766526044	-0.98241806865895	0.0441363364117814	0.214296063400695
Merged-chr8-94199678-4	chr8	94199559	94199759	+	843.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14905.0	NM_001357266	71805.0	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	3.64408932401212	3.76195777957716	4.00859443977917	3.81128098286262	4.19044200530365	4.03626316397191	3.79784805020275	3.86265730208268	0.491959679973316	0.273282873871746	0.58486342477733
Merged-chr4-98436988-4	chr4	98436894	98437094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005784, intron 11 of 19)	intron (NM_001005784, intron 11 of 19)	25967.0	NM_001355177	12695.0	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	5.65468430183926	5.41352578191634	5.79653207038388	5.29315408286141	5.64536242835141	5.67198201782633	5.55069044506322	5.40577749357621	0.067370616324664	0.81381115816662	0.928107164238675
Merged-chr9-90109574-4	chr9	90109488	90109688	+	964.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 2 of 12)	intron (NM_001039147, intron 2 of 12)	5232.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	4.55427019429727	4.77384811343362	4.46298164099772	4.90206615978964	4.97687808045762	4.59490588743956	5.00702553802427	4.99755727354673	0.419364966695365	0.240034088025896	0.550466729544276
Merged-chr18-32837233-4	chr18	32837154	32837354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045381)	promoter-TSS (NR_045381)	29.0	NM_144863	225348.0	Mm.38816	NM_144863	ENSMUSG00000038299	Wdr36	5730444A13Rik|Ta-wdrp	WD repeat domain 36	protein-coding	7.47717437522575	7.46251297598798	7.29028803678804	7.39703404202921	7.33565780138911	7.39044046341687	7.45061915151959	7.20811739677928	-0.0809197568181627	0.646608515615025	0.85139884884082
Merged-chr19-53825040-3	chr19	53824953	53825153	+	720.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 5 of 13)	intron (NM_001170847, intron 5 of 13)	-67178.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	3.3966855150001	3.51237154830911	3.250972992462	3.24885937513134	4.37939304279843	3.58729997811425	4.39476927177556	4.12945482957219	2.4024995043347	2.85963352160997e-06	9.05453089122224e-05
Merged-chr9-71951434-4	chr9	71951324	71951524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011544, intron 5 of 20)	intron (NM_011544, intron 5 of 20)	-55328.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	7.16186330560246	7.09647543576479	7.28264966401955	7.33136873108587	7.29955575244527	7.08896535233483	7.05722834537932	7.22469086766306	-0.0680427362656899	0.716483075063655	0.8866074790069
Merged-chr16-12032679-4	chr16	12032588	12032788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028277, intron 2 of 4)	intron (NM_028277, intron 2 of 4)	48575.0	NM_001174086	72555.0	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	6.62972641265708	6.1165822587323	6.95546467349138	7.19380735071886	6.96479975376037	7.01475305759756	6.89517877347939	6.65793576856521	0.131819988093959	0.628839300530636	0.841823003934767
Merged-chr2-11778510-4	chr2	11778404	11778604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348237)	promoter-TSS (NM_001348237)	751.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	7.51642688112054	7.72509565458216	7.57298387080967	7.77451950117231	7.80804268670919	7.88669185717494	7.76495536185146	7.35203694840769	0.0814667556901588	0.669147027168253	0.863397557169305
Merged-chr8-11476956-4	chr8	11476852	11477052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126558)	promoter-TSS (NR_126558)	-977.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	7.90217011899263	8.16619814115044	8.61804356764193	8.19142912163409	8.34577373267444	8.46939888099147	8.4505005530302	8.50821103888545	0.252468152782949	0.180193425388917	0.476554500474018
Merged-chr9-56928316-4	chr9	56928185	56928385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175483)	promoter-TSS (NM_175483)	86.0	NM_175483	235406.0	Mm.191459	NM_175483	ENSMUSG00000032733	Snx33	E130307J07Rik|Sh3px3	sorting nexin 33	protein-coding	5.57974184044236	5.62454479997861	5.70623040428876	5.26096115731781	5.47179634963113	5.61701132345305	5.55258060838431	5.65351040721384	0.0623046592543674	0.824086340445151	0.932476232435989
Merged-chr11-94506144-4	chr11	94506042	94506242	+	889.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170671, intron 13 of 18)	intron (NM_170671, intron 13 of 18)	-6168.0	NM_027984	71889.0	Mm.248620	NM_027984	ENSMUSG00000010080	Epn3	2310022G12Rik	epsin 3	protein-coding	4.13280764267314	3.88358844425774	3.89556963361596	4.11185022907985	3.90613257239853	4.06841919205419	3.88004420302371	4.21406771032543	0.00666928607888571	0.987638989308814	0.995315979319888
Merged-chr5-96993354-4	chr5	96993219	96993419	+	887.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4370.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	4.47847016972635	4.37969651243285	4.23374594470546	4.34090984202037	4.18471364567296	4.36062977192688	4.16960305059002	3.74615967874413	-0.560579956219796	0.18238790167249	0.478870839289789
Merged-chr2-59611960-4	chr2	59611847	59612047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198294)	promoter-TSS (NM_198294)	-95.0	NM_198294	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	5.78788808231617	5.27387039533044	5.3360921877662	5.65674639753568	5.30751967832228	5.28262866905409	5.18338099487194	5.30177241914144	-0.472352949310569	0.110802492972433	0.367734911516053
Merged-chr11-16637877-4	chr11	16637766	16637966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114337.0	NM_207655	13649.0	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	7.55616030009922	7.29755545428012	7.8550692556828	7.57418248299257	7.77575173065273	7.66966968223023	7.75859816692382	7.70584012666696	0.193770144371556	0.295148406230727	0.607248479798154
Merged-chr12-34432010-4	chr12	34431910	34432110	+	911.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 6 of 27)	intron (NM_001271386, intron 6 of 27)	96879.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	4.51224265287867	4.6417454349047	4.51296123623268	4.56448424705838	4.34284819856302	4.68435001776997	4.4921754190343	4.13710352461359	-0.311704804917943	0.408047935201945	0.704141873054191
Merged-chr6-108146626-4	chr6	108146531	108146731	+	908.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145937, intron 6 of 8)	intron (NM_145937, intron 6 of 8)	38952.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	3.92485367118988	3.52419626297374	3.5103405512076	4.30643724546005	4.18941300767551	4.09891082798833	4.05186720304316	4.23741187730289	0.701096687283436	0.179439925921297	0.475667183458399
Merged-chr2-104069923-2	chr2	104069844	104070044	+	596.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-1066.0	NM_181858	333883.0	Mm.359026	NM_181858	ENSMUSG00000068686	Cd59b	-	CD59b antigen	protein-coding	3.5897767502635	3.35528909811273	3.44438753992271	3.1383904095677	3.21018865352306	2.98067654872383	3.20791716912155	3.44235130403231	-0.597691399428029	0.299321132171886	0.611562066856898
Merged-chr18-6765075-4	chr18	6764992	6765192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278447)	promoter-TSS (NM_001278447)	-75.0	NM_181070	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	8.96769067724239	9.11659232181511	8.95083699637065	8.99306000593592	8.98998559031042	8.95536331968224	9.22627748820144	8.80588321129379	-0.00661091964472898	0.965942717011155	0.988022131369328
Merged-chr18-40440688-3	chr18	40440600	40440800	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026135, intron 1 of 1)	MTD|LTR|ERVL-MaLR	182339.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	4.07832528180847	3.61147256825337	3.88593730146581	3.63963919151224	5.18290595209944	5.21525328764543	5.34766012162503	5.27862180828384	3.30375225663717	1.24070052876433e-17	3.04523527368676e-15
Merged-chr16-3231829-3	chr16	3231764	3231964	+	822.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CTGTG)n|Simple_repeat|Simple_repeat	-360534.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	3.19518187917454	3.04100954349739	3.37396896136564	3.36638652899654	3.50404413365175	3.30716397878178	3.36083956219828	3.62289315847059	0.693132507235246	0.198381971003427	0.499916105432732
Merged-chr2-50981305-3	chr2	50981145	50981345	+	778.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	71561.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	3.63921681477449	3.64734217652673	3.84268707340806	3.87089009387931	3.79908050514836	3.37374824356716	3.57022142111653	3.97344826063471	-0.166638459094175	0.7383386691275	0.896701754212797
Merged-chr4-63424248-4	chr4	63424143	63424343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008792, intron 7 of 11)	intron (NM_001008792, intron 7 of 11)	-20798.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	5.27194074135678	5.83788311072388	5.67113274306753	5.56605385323765	6.11213766826499	5.94763376431328	6.15191388523632	5.61332414411459	0.608212898194283	0.0299154150651883	0.166929235569539
Merged-chr6-34016076-4	chr6	34015940	34016140	+	836.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13408.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	4.41598228173891	4.07465995708431	4.24784558563684	4.13962295338682	4.19731601632287	4.12427038230528	4.54336549105559	4.33231477773482	0.220363811722174	0.582261940527886	0.816501953640427
Merged-chr9-89199278-4	chr9	89199182	89199382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007534)	promoter-TSS (NM_007534)	9.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	6.75596464009708	7.003589050313	6.51250307548416	5.74240386277698	6.72103103798861	6.83240719291453	6.85379240521717	6.26709744380272	0.160012023736336	0.606173792262507	0.829351704182035
Merged-chr5-43799740-4	chr5	43799644	43799844	+	885.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17595.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	5.24675745992451	4.74725732350154	5.44967903800652	5.18671756797012	4.7218796301718	5.00401780862188	4.46010946668885	4.47691317748481	-0.992655296107662	0.00736989593536141	0.0632102449431365
Merged-chr5-38402462-4	chr5	38402361	38402561	+	905.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012363, intron 6 of 11)	ORR1D2|LTR|ERVL-MaLR	58072.0	NR_046191	78172.0	Mm.243835	NR_046191	ENSMUSG00000106932	4930487D11Rik	-	RIKEN cDNA 4930487D11 gene	ncRNA	4.98684154851699	4.70181467387332	4.62713010636718	4.98397869624351	4.5021416018276	4.53151996825914	4.99379068974473	4.74330749964882	-0.292045895172944	0.418052567120909	0.711628236434313
Merged-chr2-25574885-4	chr2	25574748	25574948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029293)	promoter-TSS (NM_029293)	23.0	NM_029293	75454.0	Mm.458079	NM_029293	ENSMUSG00000036504	Phpt1	1700008C22Rik|PHP|Php14	phosphohistidine phosphatase 1	protein-coding	6.8530961512656	7.27604313321024	7.27239004146053	6.59878389757316	7.02865127786673	7.12688857566012	7.10826800190935	7.09335239596528	0.0935342733379637	0.682774468569365	0.870017971684547
Merged-chr2-164867376-4	chr2	164867273	164867473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9665.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	6.85396694096229	6.9647579455483	7.23157318984837	7.15220598031982	6.97892742472911	7.2158375612459	7.08624629287617	6.89206062208295	-0.0259483083363676	0.896843014471863	0.961391399504409
Merged-chr9-32493825-4	chr9	32493715	32493915	+	793.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	47637.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	4.36119224633416	3.98120833298012	4.40079934034917	4.37044690925506	4.10019962126068	3.76000219992848	4.08187692418745	4.31895341260197	-0.526097735263789	0.226230499868734	0.534747808260772
Merged-chr17-28177305-4	chr17	28177204	28177404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172617)	promoter-TSS (NM_172617)	108.0	NM_001357995	224656.0	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding	6.45484676067462	6.8662687141939	6.53956572343946	6.2858959903036	6.39766214280673	6.63227840103373	6.48993844518408	6.46852706633625	-0.0739222562110261	0.752038342404135	0.902329068825205
Merged-chr3-52011504-3	chr3	52011394	52011594	+	871.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	93512.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	3.5988311051763	3.84548146920381	3.42084786818382	3.48520279604031	3.71326205718384	4.01818509443313	3.58524832178919	3.59735043584135	0.437700548173876	0.374943018087932	0.678070908583733
Merged-chr11-31818238-3	chr11	31818130	31818330	+	921.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_102310, exon 4 of 4)	non-coding (NR_102310, exon 4 of 4)	6317.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	3.59093622608482	3.6763092803852	3.38043665806469	4.16009786033177	2.98016861211973	3.01825429127316	2.89866285258545	3.12774477259142	-3.03700796506101	1.12609468346154e-05	0.000306634634560477
Merged-chr2-91089230-4	chr2	91089153	91089353	+	972.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7425.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	4.83961183787589	4.59400843285939	5.26685132431476	5.34756598773884	5.05221843607738	5.19493729577385	4.85565538010606	4.91276429820038	-0.100233172547401	0.780719192167081	0.914614705385241
Merged-chr3-84582755-4	chr3	84582638	84582838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081093)	promoter-TSS (NM_001081093)	-113.0	NM_001081093	99889.0	Mm.316536	NM_001081093	ENSMUSG00000074513	Arfip1	2310030I10Rik|Arfaptin|D3Ertd598e	ADP-ribosylation factor interacting protein 1	protein-coding	7.67464131942027	7.54491337658095	7.91199184626927	7.59561716832907	7.78273350944158	7.73001523851606	7.97330291275448	7.70379152817541	0.155787090022183	0.381695847902182	0.683873258696798
Merged-chr2-90489116-4	chr2	90489016	90489216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-9942.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.89538931871339	7.0398822706834	6.9619762458926	6.88840401170254	7.05284454903044	6.90151527390186	6.90116319557247	6.98227521149788	0.0290483828659945	0.877763183799489	0.954314763971155
Merged-chr1-36089651-4	chr1	36089550	36089750	+	925.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	21250.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	4.252002957064	4.48447094904702	4.86400988704082	4.88843058697128	4.37206065372061	4.86202339880051	4.28531188958941	4.72421347198942	-0.178537985361425	0.662490217036612	0.860076078546136
Merged-chr9-104972997-4	chr9	104972883	104973083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 7 of 15)	intron (NM_028719, intron 7 of 15)	-80285.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	7.3845099591289	7.20168969814009	7.09584108748998	7.60086312331469	7.04140030446772	6.74258295046855	7.3866828773045	7.18392535982014	-0.318545541021351	0.153143451637506	0.437555330104179
Merged-chr11-70166566-4	chr11	70166464	70166664	+	965.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010796)	promoter-TSS (NM_010796)	-59.0	NM_001204252	17312.0	Mm.252405	NM_010796	ENSMUSG00000000318	Clec10a	CD301a|M-ASGP-BP-1|Mgl|Mgl1	C-type lectin domain family 10, member A	protein-coding	5.33678922152872	5.14275448348292	5.15507339651207	5.61858793029243	5.10840752355032	4.77611732450396	5.25349531778392	5.27605366258156	-0.415147837161491	0.202927855362781	0.505510393266723
Merged-chr5-113647379-4	chr5	113647282	113647482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	3008.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	7.23095394345507	6.71714152871657	7.40281489817847	7.64324465942256	7.13809610457992	6.81804584491051	7.35661370587107	6.99131041165567	-0.280700421288515	0.261811903598725	0.573735706605511
Merged-chr4-47322591-4	chr4	47322513	47322713	+	834.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-30609.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	4.23716989445726	4.26826586862065	4.23783619212494	4.20704770514172	3.96038614251855	3.90964436245196	3.83250946034999	4.19239598929534	-0.67383688149061	0.106260424197515	0.359240505270803
Merged-chr11-53494676-5	chr11	53494579	53494779	+	992.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14484.0	NM_183173	237761.0	Mm.145208	NM_183173	ENSMUSG00000044352	Sowaha	A830006N08Rik|Ankrd43	sosondowah ankyrin repeat domain family member A	protein-coding	3.83457390962451	3.75631964677328	3.78878128147753	3.73253303893933	3.29699113553643	3.5840979927255	3.51434223753475	3.58222627742425	-0.925524462452592	0.0590904971935525	0.256143353127379
Merged-chr12-40038068-4	chr12	40037941	40038141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007487)	promoter-TSS (NM_007487)	-54.0	NM_001039515	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	7.95729837162885	7.99295488938178	7.71651177927118	8.07966107070309	8.07943154730978	8.32074176260461	8.34284638521638	8.20328989297331	0.366773033869383	0.0313306074272855	0.17235345127651
Merged-chr13-100697646-3	chr13	100697529	100697729	+	870.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_183115)	TTS (NM_183115)	28148.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	3.68644166398642	3.67177128592229	4.02283322707122	4.02870933116798	4.12669176802617	3.93157642295475	4.67288303686737	4.28720987431259	1.05185621571297	0.0247940220209638	0.147612734481722
Merged-chr4-134128770-4	chr4	134128690	134128890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080559)	promoter-TSS (NM_080559)	-37.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	6.43532490296162	6.16050913662718	5.87240614010896	6.07333357459807	6.10611159173606	6.04954425435287	5.98101116074323	6.00739058211036	-0.16530146716406	0.501391174747535	0.769203095317685
Merged-chr9-94670489-4	chr9	94670425	94670625	+	907.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 1 of 15)	intron (NM_177909, intron 1 of 15)	633.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	4.26390265690198	4.08559137909204	4.42299666750876	4.01720716400457	4.03581089591045	4.15797746043352	4.01702880021876	4.17461076298928	-0.25411062230076	0.541066323680281	0.793043260367743
Merged-chr12-73632962-4	chr12	73632855	73633055	+	967.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	48159.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	5.16158327134346	5.36904175430983	5.3131086940618	5.52634389835047	4.87260134565016	4.79719759448227	4.9676325589633	5.25133965203605	-0.717877283988468	0.023039914586027	0.140523782378677
Merged-chr19-41364709-4	chr19	41364599	41364799	+	866.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	20371.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	4.81315573824649	4.56896056252552	4.88111505448625	4.71391400701029	4.63571986934413	4.75993150069601	4.60592829057937	4.49814811663815	-0.251265814699662	0.467736581528809	0.747125948872246
Merged-chr3-142530226-4	chr3	142530130	142530330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083312)	promoter-TSS (NM_001083312)	-106.0	NM_001083312	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	7.63029439655319	7.74876166944684	7.76879457260678	7.95748377122061	7.5117693618781	7.64527108830059	7.18535825781016	7.58297655493889	-0.391297108693865	0.0376174349641007	0.193844306328077
Merged-chr13-45750221-3	chr13	45750105	45750305	+	721.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 4 of 6)	intron (NM_001199304, intron 4 of 6)	214786.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	3.43763890050558	3.65019564920245	3.49200528639443	3.51474001378408	3.36859430591537	3.3729937530343	3.25063075759308	3.38007872356631	-0.635927262287569	0.213412016062487	0.518817373930522
Merged-chr5-72763098-4	chr5	72762927	72763127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 14 of 17)	intron (NM_013689, intron 14 of 17)	-10250.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	3.7669313033964	3.37582418654007	3.86292659419377	3.64125968568072	3.641902618953	3.41122347474375	3.53894869497359	4.14633722786724	0.137552176246948	0.794723708835178	0.920592362054765
Merged-chr3-31459628-3	chr3	31459523	31459723	+	892.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149304.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	2.87124755023655	2.92568308801162	2.93072909551203	2.74706810732772	2.97663302706516	2.84921632834142	2.73632241079261	2.74336972513833	-0.132670743576075	0.830822019664294	0.935077092131695
Merged-chr10-24645346-4	chr10	24645231	24645431	+	899.020874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008813, exon 24 of 25)	exon (NM_008813, exon 24 of 25)	49889.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	4.60586795298911	4.47830907268411	4.75422606251225	4.94030446797772	4.50114824021536	4.32275517660569	4.54584042688709	4.48057362392334	-0.55979044959743	0.131009955922857	0.402936423654367
Merged-chr3-101003939-5	chr3	101003852	101004052	+	820.9023440000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167906, intron 7 of 8)	intron (NM_001167906, intron 7 of 8)	25543.0	NM_001167906	630146.0	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	4.13753733283113	4.10693886151433	4.09489816519098	3.5979861167206	3.81265736553911	3.86315189941512	3.98611785567488	4.00115231071889	-0.202852172479094	0.662484860597572	0.860076078546136
Merged-chr2-73064200-4	chr2	73064096	73064296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83750.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	5.15979218369221	5.54624254191124	5.709469427276	5.74372167854796	5.48070203353088	5.50578400957006	5.50589726861524	5.44633736250221	-0.153753270937828	0.592948676644605	0.822430169421787
Merged-chr5-43915416-4	chr5	43915324	43915524	+	999.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	46615.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	5.48177240595562	5.51505355118302	6.05356550105349	5.5991365215828	5.25849146497459	5.22313120444618	5.73682047896813	5.82952898335082	-0.240363744041847	0.444698692152937	0.731044175244865
Merged-chr13-95893064-4	chr13	95892964	95893164	+	842.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1142.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	4.18548576796048	4.05243818408067	4.0961779034412	4.06787117583342	4.00521774729208	4.12211716094004	3.9829801677053	4.22601128642474	-0.0369547944375825	0.927702036710164	0.973615800862715
Merged-chr14-54735737-4	chr14	54735634	54735834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016972, exon 5 of 11)	exon (NM_016972, exon 5 of 11)	-23560.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	5.79001891342454	5.67690322079288	5.69739957505397	5.68281896408316	5.60109668743804	5.47912505082676	5.37038282086172	5.45339015021638	-0.380468242255371	0.149074981812931	0.431120542531796
Merged-chr8-80949440-2	chr8	80949333	80949533	+	832.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	65473.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	3.85865064592561	3.2741167978558	3.56574011157734	3.06685357457515	3.46171447106876	3.89161621275842	3.37737007204948	3.76629039842763	0.532653643852638	0.350602610731007	0.658186562602986
Merged-chr16-44724406-4	chr16	44724302	44724502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145972, exon 1 of 9)	exon (NM_145972, exon 1 of 9)	101.0	NM_145972	212547.0	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	8.15238188221297	8.30032365180077	8.83462637785283	8.26341894576424	7.86179299631409	8.03150898214249	8.16363435871928	8.12325869014021	-0.466686441471174	0.0196134230867354	0.1263063278649
Merged-chr18-67290502-4	chr18	67290418	67290618	+	864.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053261, intron 1 of 7)	intron (NM_053261, intron 1 of 7)	1295.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	4.36163568036914	4.13996985372922	4.36233071910034	4.41158429786829	4.0070375604786	4.40537776774442	4.16981445089466	4.03744417600377	-0.426050310276197	0.293504616239444	0.606008746948365
Merged-chr15-76698094-4	chr15	76697976	76698176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_182805, exon 5 of 11)	exon (NM_182805, exon 5 of 11)	1350.0	NM_182805	76282.0	Mm.30130	NM_182805	ENSMUSG00000022546	Gpt	1300007J06Rik|2310022B03Rik|ALT|ALT1|Gpt-1|Gpt1	glutamic pyruvic transaminase, soluble	protein-coding	7.47890652689752	7.65686251558077	7.30698272471827	7.28511025131099	7.76291741373677	7.67635745446257	7.66033432480206	7.6846724109526	0.347950976721239	0.052393622239063	0.238447930777127
Merged-chr11-20455220-4	chr11	20455133	20455333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-88020.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	5.16656896579627	5.25885397080905	5.43776681457637	5.27395020598062	5.25661926025697	5.30943138859347	5.48848764140361	5.22908957531138	0.065527687454922	0.819187731334659	0.930746026231085
Merged-chr16-90456834-4	chr16	90456689	90456889	+	946.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 4 of 10)	intron (NM_015755, intron 4 of 10)	70392.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	4.48409338591608	4.14327664468818	4.48482362616027	4.23012475346547	4.41771106196797	4.35875380802935	4.06723008386624	4.27500370323815	-0.103044323874304	0.795972668568677	0.921019890694137
Merged-chr9-32686067-4	chr9	32685960	32686160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9982.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	5.94645429099227	6.21458198964657	6.39873278562725	6.40668909739328	6.04265543367017	5.80904382855763	6.26348354726045	6.17908560201807	-0.273857634153505	0.274055226564017	0.585795104252258
Merged-chr10-40349278-4	chr10	40349181	40349381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168304)	promoter-TSS (NM_001168304)	-27.0	NM_001291817	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	9.08342716630721	9.14800329969697	9.24827170401116	9.11571199762275	9.11133516964799	9.23221455822788	9.21088526019482	8.87534986395846	-0.0429605917695411	0.774723359144289	0.911999238907324
Merged-chr8-26681326-4	chr8	26681201	26681401	+	643.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143122.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	3.45773539178319	3.3394311011396	3.76604477873333	3.46364913858337	3.58237619928043	3.38491505862293	3.55486494970297	3.7636840588331	0.221972400039791	0.659875147437066	0.85859159344526
Merged-chr4-117189497-4	chr4	117189350	117189550	+	812.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-6826.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	3.50951410080818	3.27522824483223	3.45161771602725	3.20469789048274	3.66071638114197	3.68590390921205	3.31507573965432	4.1627393602123	1.2199624664256	0.0225696555637004	0.138775369318666
Merged-chr13-47228445-4	chr13	47228361	47228561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 3 of 7)	intron (NM_146042, intron 3 of 7)	34458.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	7.23226286785306	7.32780975997401	7.0293449890307	7.38376417059055	7.14240726744246	7.37708675014541	7.55915952650722	7.56618600625719	0.211916761473232	0.288237480953992	0.60028251087905
Merged-chr17-64591898-3	chr17	64591809	64592009	+	919.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9740.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	3.44582082618698	3.10899691685584	3.15316130331106	2.83447617715223	3.49985074777007	3.33219100680281	3.70953515601844	3.27656701901123	1.17260528059937	0.0425693422606977	0.209581528184532
Merged-chr9-61370643-4	chr9	61370539	61370739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1727.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	7.81485502897031	7.97202192600207	7.03960212473682	7.396999257958	7.8764821582846	8.00832550933897	7.40093662501725	7.83291725577177	0.253773349266729	0.300559656639575	0.612477626586326
Merged-chr15-37972004-4	chr15	37971897	37972097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001112721, intron 56 of 58)	intron (NM_001112721, intron 56 of 58)	-10942.0	NM_199476	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	7.53816589876563	7.70692564528066	7.82580101344853	8.15686841910749	7.78623429610872	7.55615796593069	7.93632315206653	7.90063907350438	-0.0459376320255395	0.820720959045097	0.931351590202649
Merged-chr15-66034070-3	chr15	66033963	66034163	+	768.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	-57259.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	3.64060149362715	3.5965388110795	3.79136920053842	3.50591671710571	3.64839469352165	3.70406988497025	3.39760138427398	3.83534219974279	0.0819809604488385	0.865973376843924	0.949769934673472
Merged-chr9-99498100-4	chr9	99497989	99498189	+	809.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 16 of 21)	intron (NM_028768, intron 16 of 21)	27668.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	4.5129823805581	4.86280206312564	4.42741024156229	4.62210026885264	4.76724085810588	4.36339188412001	4.57318081324341	4.33238314908194	-0.191984044070977	0.613742643117624	0.833487638457432
Merged-chr3-52077781-3	chr3	52077694	52077894	+	638.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	27212.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	2.98746351694236	3.23471583605903	2.98785810854341	2.72260881333459	3.00226997542199	2.97275128334173	2.85462853335325	2.57578375134491	-0.560797679255662	0.405211702931818	0.702180446454354
Merged-chr2-31076006-3	chr2	31075893	31076093	+	879.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	20507.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	4.21165546813288	3.7080869524399	4.1324038038249	4.42083764239985	3.68019615388077	3.62506092345289	3.73512244443056	3.50516646752474	-1.48694046878019	0.00281136495489389	0.0303694501041283
Merged-chr5-72891678-4	chr5	72891591	72891791	+	965.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22671.0	NM_001113423	75991.0	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	5.10616085449671	4.81579414698928	4.5536821254416	4.79955093329503	4.90508843691219	5.08595627742261	5.11088909203823	4.55085670591558	0.199384951717222	0.572758185209353	0.811326690382227
Merged-chr4-145013473-3	chr4	145013367	145013567	+	916.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 67 of 69)	intron (NM_001276465, intron 67 of 69)	120330.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	3.53472181583672	3.45052759833652	3.58715816047681	3.91649769677492	3.31140058905711	3.20964543726535	3.29262383357554	3.63488821511573	-0.927101820964932	0.0894344901354714	0.326470976632275
Merged-chr12-110695954-3	chr12	110695868	110696068	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010480, intron 1 of 10)	CpG	427.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	6.19987036852413	6.69243172225476	6.32133285283509	6.22175716243175	6.74356536612254	6.77097500267403	6.48271748920219	6.52768483813681	0.392771072814831	0.0911012102990092	0.329806071466875
Merged-chr6-136809305-4	chr6	136809198	136809398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177688, exon 1 of 1)	3' UTR (NM_177688, exon 1 of 1)	1050.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	6.63090496916609	6.91183164397203	6.88164780522796	7.14584114508825	6.80280062401006	6.82547567658653	6.75032585700979	6.91607225904853	-0.137218594012952	0.515063139064797	0.777349780527563
Merged-chr7-45395818-4	chr7	45395714	45395914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009224)	promoter-TSS (NM_009224)	-72.0	NR_126538	20637.0	Mm.216386	NM_009224	ENSMUSG00000063511	Snrnp70	2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Srnp70|U1-70|U1-70K	small nuclear ribonucleoprotein 70 (U1)	protein-coding	8.86726839630989	8.96961734362011	8.38313945818973	8.6861881374902	8.6933982478334	9.08794645801712	8.62785913972927	8.74793464085191	0.0677177839297594	0.719622254003562	0.888022825078143
Merged-chr2-75588765-4	chr2	75588671	75588871	+	894.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70488.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	4.46565543859231	4.57832797091481	4.28844840468023	4.545878586348	4.46895609799291	4.46292410547226	4.6712299654813	4.33247374477239	0.0172437434985762	0.962767246020879	0.986713566358706
Merged-chr9-94432392-4	chr9	94432340	94432540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	105641.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	5.45248773411468	5.29341519902091	5.28831618499282	5.31365855684241	5.05037337631181	5.0518541039532	5.20202227705625	5.16058573457292	-0.410715866120679	0.158087632564054	0.444957080085285
Merged-chr10-8021505-4	chr10	8021413	8021613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-65390.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	6.08815786728817	5.91246785258468	5.93645916082229	6.38673989684113	5.89694766153495	6.04186035486565	6.2648078416537	5.99992852043568	-0.0953117040928979	0.712780586336197	0.885041593629728
Merged-chr9-106226390-4	chr9	106226286	106226486	+	896.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_031178, exon 2 of 2)	exon (NM_031178, exon 2 of 2)	3788.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	4.34954873699423	4.53366605630123	4.67591024592847	4.38705454304041	4.80266056186033	4.47922824629338	4.50262454403028	4.30044156715935	0.136588450894155	0.718858137428248	0.887684154524562
Merged-chr13-113267420-4	chr13	113267317	113267517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57758.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	5.38392972381214	5.13552561201587	5.16902037260515	5.79737611092645	4.91475680433336	5.34508804650314	5.32942758624474	5.38109068615982	-0.312350269661798	0.352812388938574	0.659735532175456
Merged-chr4-83314663-4	chr4	83314569	83314769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	MIR|SINE|MIR	9520.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	6.66820933447963	6.45153994556358	6.98861886417533	6.94084774089937	6.32243000831379	6.5780318071211	6.69428868482574	6.76639087424024	-0.274931315460851	0.241768518095131	0.552289530014659
Merged-chr12-35042083-4	chr12	35041968	35042168	+	978.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5121.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	4.89646455411939	4.86072438364735	4.61553781711109	4.95611290779045	4.13469506387445	4.3298014674714	4.51329120706178	4.44437140449313	-1.10489008713008	0.00292470294225218	0.0313425821629882
Merged-chr9-41170163-4	chr9	41170057	41170257	+	882.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12095.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	4.40838601520768	4.14642275617763	4.0978374995212	4.41036520827415	3.98513519901959	4.22289153808134	4.2656506791399	4.44499089665289	-0.121385882655625	0.767799809816021	0.909178124683614
Merged-chr15-39616894-4	chr15	39616766	39616966	+	915.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053271, intron 22 of 26)	intron (NM_053271, intron 22 of 26)	-42645.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	3.65858245105445	3.95687878846787	4.03671604897637	4.50848757384945	3.95121477690998	3.95505815947021	4.10857425866564	3.83220232212138	-0.350766128939024	0.471714392645237	0.75002029964249
Merged-chr14-66282815-4	chr14	66282708	66282908	+	852.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1756.0	NM_001162365	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	4.1685387077427	4.18657476782738	4.07606975817728	4.06350404723732	4.25807062216164	4.09815296669646	4.10570663608428	4.12098376490526	0.0847311022538938	0.831960897798186	0.935667305160871
Merged-chr3-144572369-4	chr3	144572283	144572483	+	834.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053102, intron 1 of 4)	intron (NM_053102, intron 1 of 4)	1956.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	3.9149429417761	3.76403053307729	3.76137484911054	3.91718710989811	3.85925256625385	3.82361522211736	4.0347720105987	4.05027104924105	0.272363721362763	0.532150876076459	0.787904893424633
Merged-chr13-43482008-4	chr13	43481908	43482108	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1035.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	5.49725263170639	5.54626617333756	5.41615994217269	5.63150857219022	5.22511999783368	5.12392978791692	5.03571445972907	5.52051060470404	-0.52336482506686	0.0737102141739851	0.292404800462024
Merged-chr1-182564593-2	chr1	182564493	182564693	+	575.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145806)	promoter-TSS (NM_001145806)	-414.0	NM_001145806	170725.0	Mm.189201	NM_130890	ENSMUSG00000038599	Capn8	nCL-2|nCL-2'	calpain 8	protein-coding	2.46167108977561	2.42795684056465	2.4620004855615	2.07927912024294	2.19990689953856	2.43376482976996	2.45247421995043	2.25610351188495	-0.145267556348335	0.850634951790389	0.943633424218446
Merged-chr13-81241290-4	chr13	81241198	81241398	+	996.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	277224.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	5.55029923269966	5.46043141606516	6.22204499276926	6.10760812885314	5.36301169144842	5.6427150149288	5.37772520651106	5.20013219344517	-0.813684932622751	0.0100947749796832	0.0794664884183664
Merged-chr10-128091127-4	chr10	128091029	128091229	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_016774)	TTS (NM_016774)	-1654.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	5.45552385718641	6.01682335987614	5.06352553789295	5.61367392382558	5.71389854052807	5.98060764534496	5.97040289223071	6.07487191018334	0.564911797407997	0.0666529253466178	0.275222680893776
Merged-chr1-55052684-4	chr1	55052584	55052784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026424)	promoter-TSS (NM_026424)	-86.0	NM_026424	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	9.37947664083489	9.51451870415186	9.41617894190946	9.24186075599642	9.44610956831673	9.53675012199176	9.52901771199327	9.29561864891569	0.0810048534465914	0.576187348487539	0.813446739194192
Merged-chr2-32757156-4	chr2	32757038	32757238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045485)	promoter-TSS (NR_045485)	-96.0	NR_045485	30933.0	Mm.200695	NM_152800	ENSMUSG00000009563	Tor2a	Prosalusin	torsin family 2, member A	protein-coding	7.47786352985705	7.81343226270308	7.21307476478045	7.24503564661591	7.88798343393657	7.99092680413918	7.65281102153959	7.50240751321851	0.416220158487539	0.0529193506848475	0.239981298572678
Merged-chr3-20027523-4	chr3	20027423	20027623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 4 of 16)	intron (NM_080634, intron 4 of 16)	7787.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	7.95290139580438	8.03926291009814	8.48475160634244	8.24237052647602	7.69070128177146	7.9008919048848	7.90897764029987	7.83097949910395	-0.470502643184933	0.0105455162526226	0.082070774256005
Merged-chr3-95658773-4	chr3	95658663	95658863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008562)	promoter-TSS (NM_008562)	42.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	8.82464205729592	9.01204456866801	8.44829723757705	8.27942552127022	8.90457991296126	9.11330774252686	8.82479050977894	8.64815279247262	0.264745695496016	0.197573037947921	0.49895982014778
Merged-chr18-66473190-4	chr18	66473087	66473287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14583.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	6.59657291387424	6.86448634093153	6.74916409957806	6.66882435381048	6.7644602055888	6.63929397245333	6.51510893800592	6.77255730616215	-0.0583947882218991	0.776686338968213	0.912997079570477
Merged-chr18-68160760-7	chr18	68160660	68160860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-67186.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	4.84982687599349	5.3129196744882	5.12317862941068	4.84887468554314	4.70132481966395	4.90928180624511	4.62439020439421	5.26399985165142	-0.294241208774816	0.41174569137183	0.707123186245418
Merged-chr8-126587057-4	chr8	126586995	126587195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6341.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.77669553875934	5.71867928172208	5.35152215107393	5.66993765434443	5.66014877506132	5.67571006336895	5.12160894004609	5.5246875543387	-0.210642218448616	0.470191629964367	0.748973227079762
Merged-chr10-81289474-4	chr10	81289339	81289539	+	879.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282095, intron 1 of 20)	intron (NM_001282095, intron 1 of 20)	1828.0	NM_013769	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	3.79345647766228	3.94369145814857	3.73977732386657	3.49902175641726	4.19411358425184	3.85983009683205	4.01714960559387	3.84380125728278	0.71822441977757	0.118169505594715	0.380240493029873
Merged-chr17-28177879-2	chr17	28177779	28177979	+	858.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357995, intron 1 of 13)	intron (NM_001357995, intron 1 of 13)	461.0	NM_172617	224656.0	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding	3.40154791106349	3.36474507667586	3.34605684547597	2.98680396298705	3.14638384411922	3.20890012662786	3.15146599999655	3.85464296326715	0.335487932094643	0.573261583768674	0.811775765927973
Merged-chr9-119100498-3	chr9	119100358	119100558	+	840.544434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2020.0	NM_177117	320256.0	Mm.110648	NM_177117	ENSMUSG00000038060	Dlec1	D630005C06Rik	deleted in lung and esophageal cancer 1	protein-coding	3.73964960977508	3.54504198400605	3.37309651871721	3.39529589749808	3.58519013107292	3.28951934783225	3.36112417189011	3.73788226050368	-0.0201751324700988	0.969187775493451	0.988873837789174
Merged-chr4-53303726-3	chr4	53303613	53303813	+	731.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33481.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	3.57458836036328	4.16749884532923	3.91931750347511	3.51176610540153	3.45884269560671	3.51121569453049	3.66765704092937	3.18498454131165	-1.11269287263093	0.0451026342103747	0.217195074789274
Merged-chr3-115682979-4	chr3	115682881	115683081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32074.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	5.9028187454095	5.47101622225148	6.08611788500688	5.97478673101317	5.368560316903	5.91634754861511	5.82951729900226	5.4917874727025	-0.358915074883337	0.221970241886939	0.530047563717821
Merged-chr14-33266806-2	chr14	33266706	33266906	+	750.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	49983.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	2.92544367342533	3.03906403198671	2.71994023257986	3.28680289671261	2.86005050063544	3.09601362566672	2.9773119102981	3.04544533669731	-0.11075026019895	0.862344416188755	0.948098008988112
Merged-chr13-44937917-4	chr13	44937810	44938010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 7 of 9)	RMER17C2|LTR|ERVK	64186.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	5.80322651198463	5.89053477201907	6.04954443080546	6.13557363771986	5.9987386319603	5.87855760187063	5.72499687987655	5.80013467281849	-0.202234316058619	0.421786709503472	0.714205828236455
Merged-chr11-70225781-2	chr11	70225681	70225881	+	755.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007528, exon 9 of 9)	3' UTR (NM_007528, exon 9 of 9)	4017.0	NM_007528	12029.0	Mm.12930	NM_007528	ENSMUSG00000000317	Bcl6b	Bazf	B cell CLL/lymphoma 6, member B	protein-coding	2.75202633413491	2.64593544301176	2.63266758125573	2.25106238201312	2.48519107325159	2.45850549552525	2.55947903246043	2.63128898290605	-0.231280891891636	0.750123146088866	0.901576629816678
Merged-chr5-136253067-3	chr5	136252960	136253160	+	871.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291238, intron 18 of 22)	intron (NM_001291238, intron 18 of 22)	-8120.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	3.52615267272439	3.5195127363077	3.10301992013223	3.19837190674153	3.34916777678418	3.35204826664365	3.40537662805369	3.80134480672583	0.490130726490355	0.371504564932267	0.675565348938607
Merged-chr3-146328138-4	chr3	146328057	146328257	+	910.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50787.0	NR_033542	100038607.0	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	-	predicted gene 10636	ncRNA	4.57841498163027	4.80999697467146	4.82909405758073	4.84521566977314	5.22203733248111	5.24092027105798	4.8062504229691	4.96899422839004	0.590900209336252	0.0741628328143268	0.293404892293781
Merged-chr5-24394413-5	chr5	24394402	24394602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029020, exon 1 of 16)	exon (NM_029020, exon 1 of 16)	346.0	NM_029020	74610.0	Mm.283914	NM_029020	ENSMUSG00000028973	Abcb8	4833412N02Rik|AA409895	ATP-binding cassette, sub-family B (MDR/TAP), member 8	protein-coding	6.49649860987784	6.51429928390402	7.42898462206276	6.5910335567938	6.69596016562195	6.76082918688245	6.64468707432887	6.91090135048924	-0.0852659415152894	0.752976227798813	0.902713603306311
Merged-chr2-158174685-4	chr2	158174604	158174804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17304.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	7.46882481199087	7.46680925718501	7.62315425523718	7.69451387020767	7.56064534655055	7.57845202226795	7.56018478527388	7.53925933069424	-0.0195925983030427	0.908750729941545	0.966100563913989
Merged-chr3-126596264-4	chr3	126596127	126596327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293665)	promoter-TSS (NM_001293665)	-724.0	NM_001346636	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	7.31847595805171	7.14965189088031	7.19589741925097	6.98466335650923	7.16034813127987	7.01113044390512	6.66189859660318	7.08923127931996	-0.218348306984999	0.294432266139407	0.606634274221694
Merged-chr11-103374112-4	chr11	103374005	103374205	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 7 of 11)	intron (NM_183034, intron 7 of 11)	-10413.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	4.3784039325926	4.07115726349291	4.37909026096516	4.97572055536341	4.03511281000036	4.09762172175137	4.66581280180345	4.61508561433392	-0.287140956121482	0.541527179371234	0.793277692950506
Merged-chr8-8239704-4	chr8	8239595	8239795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	421078.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	6.60594321599941	6.67586679276435	6.73395400282724	7.33568153267826	6.84751106648307	6.88081498299784	7.20041704245439	6.8023719006227	0.0663532351457776	0.790977034498301	0.918930451102165
Merged-chr14-56887120-4	chr14	56886964	56887164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360643, intron 1 of 24)	CpG-4519	221.0	NM_001360643	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	5.0579777485861	5.09711129063831	5.19494741091549	4.53349357079922	5.7060481492404	5.4023141887395	5.13668833884822	5.66913409870684	0.969018780168253	0.00415944005824443	0.041344055844963
Merged-chr10-127603860-4	chr10	127603692	127603892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	17356.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	5.43834377050847	5.670069254915	5.52313926717706	5.20514832372757	5.30078057402641	5.69710736500284	5.35339568919595	5.71869260422689	0.113320963918577	0.703729812786208	0.880846429903092
Merged-chr2-148655165-4	chr2	148655064	148655264	+	870.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17451.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	4.48224575470065	4.56252503658813	4.43564955075664	4.79329618874024	4.66171309792212	5.11720800072354	5.2078404202855	4.65372000355464	0.69427147542802	0.0643691291043321	0.269608699571452
Merged-chr2-69803005-4	chr2	69802905	69803105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	13268.0	NM_028521	73373.0	Mm.9621	NM_028521	ENSMUSG00000027088	Phospho2	1700048E23Rik|AI661517|AU021728|AV006103|Phos2	phosphatase, orphan 2	protein-coding	5.52462605181955	5.40543524282313	5.61747903762122	5.37695241726876	6.24479416174295	6.64633111714907	6.77848661550787	6.37271103162002	1.63731691105079	1.40438922010826e-10	1.05224231892722e-08
Merged-chr14-70929118-1	chr14	70929018	70929218	+	627.0	f0_balb.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	39011.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	2.86737349271557	2.87671163384909	2.63978635499191	2.69010973135324	2.23380044464754	2.38675361464409	2.35747017109639	2.43677576114707	-2.75126368228897	0.00125647459577692	0.0161609333669688
Merged-chr3-98013444-4	chr3	98013321	98013521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010928)	promoter-TSS (NM_010928)	-117.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	6.99347292448239	7.31815589382253	7.36594296702571	6.76761048061141	7.41439906222022	7.47258291880699	7.09518412095491	7.19455148949463	0.246748250398065	0.265384562573349	0.577001515467012
Merged-chr13-60736636-4	chr13	60736539	60736739	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 18 of 26)	intron (NM_134062, intron 18 of 26)	49725.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	5.20960449855619	5.19501685643644	5.36405428836574	5.79663963498433	5.18885197633756	5.17700431346218	5.2169558972099	5.44414482898311	-0.323341609356436	0.312149446555504	0.624097229189467
Merged-chr15-38285793-4	chr15	38285696	38285896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	14104.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	6.8984639351108	7.14665269937796	7.55871200328654	6.86520187997722	6.92313083669547	7.37398915404814	7.30624002010942	7.15859707519477	0.0766263340755909	0.742701063629502	0.89858610270239
Merged-chr6-57765615-4	chr6	57765513	57765713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	59512.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	7.27892704473665	7.24462746100927	7.60786196800389	7.50581014104091	7.60583093795534	7.17082077531982	7.3363380860093	6.96062890914573	-0.160672492467057	0.454726699020562	0.738500312804248
Merged-chr10-54118561-4	chr10	54118492	54118692	+	831.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42670.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	3.86763623249801	3.8489419348569	3.64870405501791	3.9716793333678	3.91160443868158	4.08732309930908	3.85225777940535	3.96300253153468	0.286579943137562	0.516386749592622	0.77810009842189
Merged-chr18-88894225-4	chr18	88894141	88894341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018821)	promoter-TSS (NM_018821)	-34.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	7.68129365288207	7.64430045032379	7.57954117110457	7.70609520667489	7.50767714335265	7.76584662711549	8.03673119188094	7.40193758900916	0.0564585738783411	0.774930004196169	0.912134538607699
Merged-chr12-21316435-4	chr12	21316332	21316532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026347)	promoter-TSS (NM_026347)	40.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	6.73236480507909	7.03463289485813	7.26754155748437	6.90491690729934	6.39645480872624	6.33686741791765	6.25404502889219	6.60722270026458	-0.846070245357095	0.000167215360697279	0.00313133968931113
Merged-chr7-127273267-3	chr7	127273141	127273341	+	943.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009266, exon 1 of 1)	exon (NM_009266, exon 1 of 1)	818.0	NM_009266	20768.0	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	3.22654399087825	3.60010205228057	3.02856560805063	3.05789950950111	3.52863683122735	3.5686205409961	3.2153996593116	3.22532922221005	0.528417318716589	0.360383203399636	0.665793074685122
Merged-chr4-130828937-2	chr4	130828837	130829037	+	999.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36400.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	3.89115467683556	3.35728606303351	3.69613568930748	4.10074948270423	3.75144700177301	3.64321346652502	3.7816037991438	3.52533019256068	-0.359309878913944	0.489741372477427	0.761935283416117
Merged-chr18-80712545-4	chr18	80712439	80712639	+	849.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 1 of 9)	CpG	532.0	NM_001164109	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	3.89975258235913	3.70095369094821	3.75685732655869	3.78863655044795	3.78498799055886	3.45732090165898	3.92696891686401	3.53479961345398	-0.275378473835564	0.566520145791705	0.807900514541786
Merged-chr10-62507872-4	chr10	62507781	62507981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011157)	promoter-TSS (NM_011157)	-124.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	7.70061734750316	7.86623591396534	7.64258464686906	7.63245587002986	8.01274576340167	8.05648964171034	7.72869372194505	7.58419438246262	0.196836206750485	0.289985109354135	0.602090020964879
Merged-chr18-75943737-4	chr18	75943636	75943836	+	780.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 2 of 4)	MLT1A0|LTR|ERVL-MaLR	-115590.0	NM_001357506	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	3.86951081992341	4.03074603840126	3.9760379818457	3.92590216007085	3.84718783861577	4.37749500991471	4.18912152188573	4.24745187532312	0.5739464456413	0.179980272931255	0.476327043947715
Merged-chr2-84967583-4	chr2	84967471	84967671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12890.0	NM_008920	19074.0	Mm.142727	NM_008920	ENSMUSG00000027073	Prg2	EMBP|MBP|mMBP|mMBP-1	proteoglycan 2, bone marrow	protein-coding	5.66859824417994	5.61632531845772	5.96115439244815	6.0994142417162	6.17360639725798	5.73431726771636	5.79415461259236	6.13821856867199	0.186105788361369	0.501169637109617	0.769119803481994
Merged-chr3-152884158-3	chr3	152884067	152884267	+	973.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	98040.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	4.16023871645725	3.86428340800082	3.99863619381067	4.33602900919198	3.26808205540625	3.22075564094746	3.39351537774233	3.65052165613107	-2.36463189320359	1.90468521750306e-05	0.000487324187982208
Merged-chr9-119088314-4	chr9	119088204	119088404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293648)	promoter-TSS (NM_001293648)	-43.0	NM_001293648	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	6.85268968848839	7.07850701887715	6.89617302486424	6.6486244044081	7.22870477669035	7.12787626836336	7.48843652023394	7.42473828795514	0.626399743005884	0.00216662330843409	0.0248651521783469
Merged-chr3-63964761-4	chr3	63964649	63964849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331067)	promoter-TSS (NM_001331067)	-16.0	NM_015728	11416.0	Mm.135619	NM_015728	ENSMUSG00000027822	Slc33a1	AI315656|AI788741|Acatn|D630022N01Rik	solute carrier family 33 (acetyl-CoA transporter), member 1	protein-coding	8.52160833624152	8.79340250938841	8.58938132406871	8.48161615518245	8.40299563552397	8.7200049849802	8.6893779496616	8.43195489853069	-0.0439224333514999	0.792072918180659	0.919484287594563
Merged-chr17-6982547-3	chr17	6982432	6982632	+	893.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026611, intron 2 of 8).2	intron (NM_026611, intron 2 of 8).2	3672.0	NM_026611	68195.0	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	3.3720912139676	3.80006227963853	3.56477961522364	2.98197775279722	4.15820032233616	3.6860140935225	3.86489398929296	4.13464840661655	1.55348381932526	0.00491150753262873	0.0469319633058102
Merged-chr16-97593243-4	chr16	97593148	97593348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015775, intron 3 of 13)	B3|SINE|B2	17947.0	NM_015775	50528.0	Mm.276145	NM_015775	ENSMUSG00000000385	Tmprss2	D16Ertd61e	transmembrane protease, serine 2	protein-coding	5.99023648150633	6.20502782998655	5.89858455258991	6.06815957759765	6.12607627216978	5.9505076763306	6.29096713430856	6.19264842241025	0.149576752620738	0.528290056752603	0.784934672970676
Merged-chr10-83543977-4	chr10	83543894	83544094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033375)	promoter-TSS (NM_001033375)	53.0	NM_001033375	319277.0	Mm.491194	NM_001033375	ENSMUSG00000034560	Washc4	A230046K03Rik|AA589518|Kiaa1033|mKIAA1033	WASH complex subunit 4	protein-coding	7.49265454197704	7.83782636478411	7.79827129699674	7.59259581327028	7.47170170250044	7.44154738969755	8.05248035087151	7.56305264408177	-0.0399775122560903	0.847583606116956	0.942335253076034
Merged-chr9-121385297-4	chr9	121385194	121385394	+	896.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357970, intron 1 of 15)	intron (NM_001357970, intron 1 of 15)	2500.0	NM_001357969	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	4.47237737283472	4.47812460979659	4.05473142593929	3.95271907160356	4.57364419650649	4.60409340310088	4.23870919195885	4.42989147129152	0.524895919325005	0.202728209139976	0.505275565576953
Merged-chr10-8747957-4	chr10	8747858	8748058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 10 of 19)	intron (NM_175155, intron 10 of 19)	138112.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	6.81337266133707	6.44194992498215	6.61980520513521	6.99847777281285	6.30014514366268	6.30795558246775	6.44318257768098	5.88140048419436	-0.725029008335505	0.003566243324839	0.0365818754314333
Merged-chr11-69793569-3	chr11	69793484	69793684	+	777.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009601, exon 6 of 11)	exon (NM_009601, exon 6 of 11)	2353.0	NM_009601	11443.0	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding	4.17114862766546	4.10519215579612	4.0379139055025	3.88232871679825	3.7255307893453	3.95587413814182	3.97298742297799	4.16913949849728	-0.234689027009739	0.592959916050474	0.822430169421787
Merged-chr12-111413521-4	chr12	111413428	111413628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3902.0	NM_001289487	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	5.69720158800929	6.16412275792142	5.87258647294136	5.81595687675749	6.07963885984648	5.9011486746736	5.91026764016756	5.77178579437561	0.0474488023722245	0.853652574043365	0.944903737664624
Merged-chr13-85290864-4	chr13	85290757	85290957	+	950.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1371.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	4.49769080915694	4.63059513493059	4.58439156486377	4.63825989989274	4.78065595979076	4.7582045953499	4.71844298589095	4.84349352632294	0.385654114682989	0.250229822209073	0.561280323796035
Merged-chr6-65608902-1	chr6	65608802	65609002	+	694.0	f0_balb.idr	intron (NM_001001495, intron 6 of 7)	intron (NM_001001495, intron 6 of 7)	18504.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	3.65131422841499	3.31638819468759	3.42918199935744	3.9560201931347	3.29833313157995	3.71713731661297	3.6861489310768	3.59762212083265	-0.14150181841025	0.795614252098822	0.920897975671128
Merged-chr1-74368470-4	chr1	74368365	74368565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033345, exon 10 of 10)	exon (NM_001033345, exon 10 of 10)	6357.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	7.3137081117813	7.63951268957032	7.7613974841674	7.81593981821654	7.69928066255154	7.64012061705847	8.12663611805698	7.80217727592314	0.230673876751482	0.251505280986542	0.56287087730158
Merged-chr5-64865450-3	chr5	64865339	64865539	+	627.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61916.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	3.33608284450551	2.96095764572814	3.12127815022824	2.97793784672581	2.99711633587197	2.97101168475379	3.1095097365646	3.2316417584758	-0.0808364663358553	0.889674463430002	0.958629991863094
Merged-chr9-58578869-4	chr9	58578761	58578961	+	895.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3379.0	NM_001293673	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	4.21596918859804	4.45342993546496	3.82447531538143	4.31466538337061	4.44803231307411	4.61037822158169	4.67404301654989	4.35201697345823	0.681923980590106	0.096245187185814	0.340015692808172
Merged-chr12-85659526-4	chr12	85659395	85659595	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27225.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	4.77622770359129	4.73645651938882	4.70701024014181	4.56343243845612	4.2556653994782	4.55669464683871	4.26591026360332	4.59107746543373	-0.613325088398155	0.0970252740734519	0.3412472568077
Merged-chr5-24687931-4	chr5	24687826	24688026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305264, intron 1 of 14)	intron (NM_001305264, intron 1 of 14)	2111.0	NM_001305264	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	7.70191544977643	7.88536198758738	7.50113218372536	7.52605771346764	7.87296005009597	7.7611995045555	7.57324135180711	7.63976420948676	0.0803718561681192	0.663292643745505	0.860474358262764
Merged-chr6-134640970-4	chr6	134640856	134641056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026371)	promoter-TSS (NM_026371)	16.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	8.05919881119728	7.89452092548473	7.73196381872259	8.07170776517696	7.99753028425238	7.8498067434027	8.29686029555048	7.87602283962121	0.0869480951440002	0.637632818707338	0.846859692033839
Merged-chr11-70787202-4	chr11	70787105	70787305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	22758.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	6.74704824155898	7.13428096882881	6.60964291560091	6.83365273896041	6.65620891993269	6.92467391740254	6.71389713947247	6.66837838955976	-0.154782309879908	0.475095634028303	0.752077675107718
Merged-chr1-36079851-4	chr1	36079758	36079958	+	882.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	11458.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	4.20675231917652	3.77949000691204	4.20741474593922	4.46427553987352	4.12798888798903	3.75199569883011	3.85671414167481	4.07172706219154	-0.603676420185228	0.195351542639846	0.496161550528513
Merged-chr12-80832401-4	chr12	80832316	80832516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178682, intron 2 of 5)	intron (NM_178682, intron 2 of 5)	41884.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	6.63021544145986	6.54748508611864	6.23811519650088	6.72876023289829	6.3778981313979	6.39511518418066	6.08045299158581	6.38469544036563	-0.359053855718587	0.123165737664801	0.389134628312082
Merged-chr7-118104900-4	chr7	118104809	118105009	+	846.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_170669, exon 5 of 5)	3' UTR (NM_170669, exon 5 of 5)	11238.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	4.17070942148055	4.22351633228398	3.54158516049124	4.18111439012472	4.00299333743095	4.42986688925021	4.05922069583284	4.48901657983475	0.492832912227808	0.301320550665673	0.613355909344422
Merged-chr4-137739335-3	chr4	137739224	137739424	+	615.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	14863.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	3.26587665409214	3.3091435069671	3.48828622847111	3.34568123552253	3.28562183766031	3.31562152196104	3.31312192985513	3.53613394459506	0.0378603846129012	0.94172507412452	0.97898049638905
Merged-chr11-62648759-4	chr11	62648654	62648854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198861)	promoter-TSS (NM_198861)	90.0	NM_175002	216829.0	Mm.295306	NM_175002	ENSMUSG00000048497	Mmgt2	AI852046	membrane magnesium transporter 2	protein-coding	6.60283242112965	6.88785219753613	6.32311804498168	6.54473954759017	6.513459271877	6.66555009901172	6.91087475881093	6.48407660874772	0.0641903652170202	0.782820072833671	0.915388590183887
Merged-chr13-64344324-3	chr13	64344229	64344429	+	732.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26191.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	3.63234896838739	3.5959291832013	3.83927069771437	3.89065403104178	3.17263532564132	3.96110065466524	3.8223828203446	3.73797840524079	-0.140712616568063	0.793654965396342	0.920154586076439
Merged-chr1-134416872-4	chr1	134416787	134416987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306069, intron 1 of 7)	intron (NM_001306069, intron 1 of 7)	1223.0	NM_001306069	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	5.38785061937505	5.03452361977213	4.36301654678209	5.08424716410756	5.19380788971994	5.0581369347992	5.19507638010777	5.38496996859128	0.363134764277053	0.318246947442585	0.630081551669701
Merged-chr17-31088925-4	chr17	31088851	31089051	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	31257.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	5.00740931178454	5.17777419527278	4.7874891579639	4.78564200741551	4.8710911160901	5.07704787049299	4.98393128256086	5.16321617942335	0.156486747060501	0.630815832870466	0.843092134650836
Merged-chr7-58677364-3	chr7	58677205	58677405	+	668.416687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009728, intron 1 of 20)	intron (NM_009728, intron 1 of 20)	19103.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	2.97764162947834	3.11220998655882	2.9057599769175	2.60888864999686	3.48340423136225	3.35128045076411	3.10052736698335	3.71252950267989	2.08042540992355	0.000791692269478776	0.0111462053405192
Merged-chr2-128770775-2	chr2	128770690	128770890	+	936.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-47513.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	2.84661197538017	2.89081754922523	3.21657805903252	3.13169929075051	2.94699948072019	3.09123483967893	3.09292296388998	3.31736977036638	0.322467732832777	0.58930818794123	0.8204512961316
Merged-chr7-90060117-4	chr7	90060017	90060217	+	914.895874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30958.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	4.32601747378767	4.10084570890981	3.91904361436888	3.67251927513806	4.34954435898505	4.33197101509371	3.90300008404335	3.80602368447604	0.280700469449659	0.554407071577554	0.80074000106465
Merged-chr9-25155972-4	chr9	25155871	25156071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-4190.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	5.96376105458264	6.11113705346434	5.9881436914264	6.57143175288347	6.28527112700417	6.0455321770956	6.22582558148763	6.4434982375217	0.0785179216243376	0.767430803043056	0.909006991326805
Merged-chr7-19327322-4	chr7	19327209	19327409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17264.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	8.01456702888804	8.20120928174775	7.72845162095868	7.960791835426	8.33672715203784	8.12405243128033	8.23813530575965	7.91219498965965	0.228131647580038	0.214233282515016	0.519979227175078
Merged-chr13-49191120-5	chr13	49191028	49191228	+	912.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	3581.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	4.82858508717551	5.35234565292439	4.67224966444097	4.56920162148451	4.94379452689791	4.84903316361225	4.94497343154947	4.58305233601824	-0.0945372838073691	0.802707193939538	0.923936032101707
Merged-chr6-29507834-4	chr6	29507712	29507912	+	892.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029985, intron 1 of 37)	CpG	140.0	NM_001029985	333088.0	Mm.332961	NM_001029985	ENSMUSG00000059022	Kcp	AW060220|CRIM-2|Crim2|Gm793|KCP-1	kielin/chordin-like protein	protein-coding	4.09787816395996	4.19723042801226	4.31357108845381	4.08280609457376	3.8993180264019	3.776695974689	4.1701531921009	4.22918904568786	-0.369949176634238	0.387906276873513	0.688726934413767
Merged-chr1-189007819-4	chr1	189007724	189007924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172650)	promoter-TSS (NM_172650)	16.0	NM_001359577	226823.0	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	7.33862554990131	7.22734697594631	6.96185291864994	7.18200851441289	7.30090498078932	7.47621893362952	6.95302847780861	6.99639639988089	0.0218892772147421	0.916640742376738	0.969113574476552
Merged-chr6-53710829-4	chr6	53710729	53710929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109996.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	5.29790798254434	5.86777879231342	5.33354495105146	5.11502155339133	5.97538334785176	6.24461632311521	6.1840172287991	6.04706636911521	1.1217774740935	0.000111111367714492	0.00221472865935306
Merged-chr1-60042902-4	chr1	60042780	60042980	+	817.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027407, exon 1 of 11)	5' UTR (NM_027407, exon 1 of 11)	242.0	NM_001357296	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	3.74561339681226	3.51069266546981	3.52540377338976	3.77962668043999	3.69709330118381	3.75793906560005	3.91661207904474	3.79365355724196	0.405131940633252	0.387173564642805	0.688130369231529
Merged-chr7-19562358-4	chr7	19562189	19562389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_199149, exon 1 of 13)	5' UTR (NM_199149, exon 1 of 13)	109.0	NM_199149	232947.0	Mm.219662	NM_199149	ENSMUSG00000051403	Ppp1r37	Gm158|Lrrc68	protein phosphatase 1, regulatory subunit 37	protein-coding	5.36780350330592	5.39783714243773	5.82227427625492	5.3392109527985	5.1612639940224	5.76375501439789	5.40080040996992	5.45275970645309	-0.0630016715512076	0.837437763629438	0.938339070778508
Merged-chr6-115717826-4	chr6	115717715	115717915	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41180.0	NM_029780	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	5.33561816388779	5.16222464047925	4.84498143717853	5.1432615627572	5.2917157851854	5.09853458068037	4.74078923914708	5.1270037110928	-0.0858352326906891	0.79382749483435	0.92022175040272
Merged-chr16-17249279-4	chr16	17249196	17249396	+	909.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178922, intron 1 of 2)	intron (NM_178922, intron 1 of 2)	15709.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	4.09015030562212	3.88555531572444	4.04315864198144	4.11069961916056	4.14294640965	3.89530925024651	4.16223297919826	4.34110233308082	0.277954096729938	0.506128123101173	0.771874395779538
Merged-chr17-29660603-4	chr17	29660493	29660693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028791)	promoter-TSS (NM_028791)	-2.0	NM_028791	74157.0	Mm.390979	NM_028791	ENSMUSG00000024019	Cmtr1	1300018I05Rik|AI451264|Ftsjd2|MTr1	cap methyltransferase 1	protein-coding	7.58365897699153	7.93432846752217	7.62944620187871	7.52465707004118	7.98603928390387	7.98574988418664	7.78554267639419	7.6501773217752	0.244105698537469	0.191765322989979	0.491174881537907
Merged-chr1-132316835-5	chr1	132316670	132316870	+	933.4400019999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195025, intron 1 of 7)	intron (NM_001195025, intron 1 of 7)	645.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	4.30131558518574	4.48892671321985	4.43500756019078	4.11475990442757	4.50121288916244	4.38268064548943	4.37235820738906	4.79514077562167	0.450765348774109	0.2434315500568	0.554524091960604
Merged-chr3-142744202-3	chr3	142744098	142744298	+	764.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001293560, exon 14 of 14)	3' UTR (NM_001293560, exon 14 of 14)	-21049.0	NM_145546	229906.0	Mm.271756	NM_145546	ENSMUSG00000028271	Gtf2b	-	general transcription factor IIB	protein-coding	3.46649353187582	3.13410489252911	3.23375498832714	3.43723383519954	3.37447542647704	3.58256329571037	3.34304389946858	3.61550322044703	0.511482862832636	0.332580439629205	0.643531688755946
Merged-chr19-4098586-4	chr19	4098466	4098666	+	994.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026373, exon 4 of 4)	3' UTR (NM_026373, exon 4 of 4)	1215.0	NM_026373	52004.0	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	4.78303914127359	4.29770008706163	4.78384812770101	4.62967292152421	4.48678122489854	4.33453045690532	4.28821310296841	4.48347017472653	-0.51579708911853	0.174834442252588	0.469445877441509
Merged-chr2-151632276-5	chr2	151632196	151632396	+	717.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291076, intron 1 of 5)	CpG-8656	297.0	NM_198214	241727.0	Mm.39312	NM_198214	ENSMUSG00000027457	Snph	6430515A01|AW045671|AW556958|AW743098|mKIAA0374	syntaphilin	protein-coding	3.12555165760467	3.33445004407677	3.24040247603975	2.85652430278795	2.76123352784145	3.11257644118385	2.92402366918827	3.39276068507331	-0.319653928108583	0.616312907598659	0.834939122779638
Merged-chr9-41070973-6	chr9	41070851	41071051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	8555.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	4.8525741344425	5.13152884841993	5.03299625986888	5.03285455329763	5.19422411188121	5.02828338534925	4.90478696597175	5.06271048116999	0.0761342413234003	0.806566201892597	0.925439675100154
Merged-chr12-81910687-3	chr12	81910584	81910784	+	942.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 3 of 35)	intron (NM_018814, intron 3 of 35)	50654.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	4.14274807752914	3.92964509304046	4.18519830314503	4.20868509861891	3.56470509096367	3.61376876690071	4.1657070902661	3.8566997602654	-0.847163154733414	0.0730892102156331	0.290962913531239
Merged-chr5-139388345-4	chr5	139388238	139388438	+	949.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	-1566.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	4.8984480060692	4.64948864135611	4.8650265779897	5.07154213186933	4.81051010653149	4.59146663453504	4.57463113159034	4.75322453861675	-0.412649707995846	0.234056750445499	0.543723238550186
Merged-chr7-125600747-4	chr7	125600646	125600846	+	938.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2683.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	4.48680873413683	4.51279197369786	5.10471100845497	5.20601699320257	5.02707512937421	4.93076759648833	5.04869210303438	5.03852049997092	0.245281938671156	0.509887738399787	0.774306608029494
Merged-chr16-45630544-4	chr16	45630446	45630646	+	727.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145389, intron 4 of 5)	intron (NM_145389, intron 4 of 5)	20106.0	NM_001159297	14525.0	Mm.4799	NM_008099	ENSMUSG00000022659	Gcsam	Gcet|Gcet2|M17|M17-L	germinal center associated, signaling and motility	protein-coding	3.73372229134031	3.599597111796	3.55718464257276	4.16414493855811	3.98172198552589	3.73722762438126	4.31723267011159	3.7321857129004	0.445870992776977	0.391299802113463	0.691068990195101
Merged-chr10-77530289-4	chr10	77530184	77530384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008404)	promoter-TSS (NM_008404)	-64.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	6.68956971065877	6.38798696457095	6.254675462455	6.55726788151168	6.31677559638829	6.3709263707847	6.73846973952392	6.45326846543712	-0.0148442410240292	0.948888316711466	0.981656635542134
Merged-chr16-65664905-3	chr16	65664801	65665001	+	893.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-102204.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	3.05510577589035	3.02443025365516	3.121987091381	3.01415837467591	3.56348334197521	3.41877652174417	3.63114140887638	3.1838111189904	1.5203856656758	0.00504029333483121	0.0478246055203505
Merged-chr1-123905940-1	chr1	123905840	123906040	+	646.0	f0_balb.idr	intron (NM_199021, intron 1 of 25)	intron (NM_199021, intron 1 of 25)	139619.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	3.21029160582747	3.34438180609574	3.57250625380292	3.37702968366285	3.06767898067265	3.05322514640142	3.25751089528087	3.37800730571266	-0.715947779873801	0.200839274434546	0.502982537033591
Merged-chr15-101846178-2	chr15	101846078	101846278	+	866.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008473, exon 9 of 9)	exon (NM_008473, exon 9 of 9)	4608.0	NM_008473	16678.0	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	3.24771421534718	3.17923875295701	3.30257425270156	3.00456989907797	3.2796903413947	3.1131109754478	3.1794258816974	3.13033592639116	0.015264696396072	0.978084574464606	0.992205923377531
Merged-chr3-152474783-4	chr3	152474669	152474869	+	867.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081277, intron 12 of 13)	intron (NM_001081277, intron 12 of 13)	78085.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	3.9042430499447	3.98482386390552	3.95878962238659	3.95851074560457	4.42018633772856	3.97117143576663	4.09073339183468	4.60541290013704	0.886903478086515	0.0373881389335251	0.192970077670175
Merged-chr5-81037317-4	chr5	81037240	81037440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 1 of 27)	intron (NM_198702, intron 1 of 27)	15747.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	5.74011848942341	5.92027538491751	5.95735483468703	6.53457910198244	5.76374492826914	5.69284505540008	5.9269127646207	6.01762028915395	-0.386215796737074	0.185662865766862	0.483580837325069
Merged-chr17-28698335-4	chr17	28698244	28698444	+	976.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	5776.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	5.11837264690465	5.37788284934168	4.71674693355554	4.63736872417256	5.33056950937027	4.97742415100172	5.06240121564758	4.8363211669413	0.159034345960678	0.664011293224063	0.860811748117249
Merged-chr16-35932377-4	chr16	35932294	35932494	+	960.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001013371, exon 3 of 5)	exon (NM_001013371, exon 3 of 5)	-6076.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	4.15749143661179	4.44368356277119	4.48940161858686	4.77003312147729	4.79327189184193	4.28489143505859	4.50968649130942	4.67966629350961	0.193059322103625	0.631333501144863	0.843377574047824
Merged-chr18-11794449-4	chr18	11794390	11794590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44784.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	6.99556099470378	6.48226182784364	7.12174338905282	7.10674501428599	6.57404347004563	6.55450816181552	6.78248924984841	6.61890314991897	-0.453847866826114	0.047953074726944	0.225938432911177
Merged-chr15-31530557-1	chr15	31530457	31530657	+	1000.0	f0_balb.idr	intron (NM_172606, intron 1 of 25)	CpG	480.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	4.7953567881479	4.88248106813498	4.63996921019272	4.84202913461123	4.75902320720749	4.68675208618292	4.61878897065873	5.02671749280458	-0.0342173452066324	0.919644222916052	0.970343257381288
Merged-chr17-5936444-4	chr17	5936352	5936552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-4828.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	7.30889378712156	7.47138974039726	7.76667722576192	7.598204573035	7.36656177158235	7.06446752237296	7.52194456712532	7.19438912145692	-0.328973355881123	0.0998431716699736	0.346609234862679
Merged-chr13-69382957-4	chr13	69382842	69383042	+	874.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150922.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	3.93187603337397	4.21756073673311	3.93238447343216	4.3855005491478	4.74492672283539	4.81501389383568	4.88192764024537	4.6409608483491	1.38691397689102	0.000776139313723918	0.0109754747927982
Merged-chr10-84514356-3	chr10	84514271	84514471	+	875.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19517.0	NM_175451	216197.0	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	3.25527722275185	3.54986240777113	2.98828971182941	3.375136185625	3.36615681883015	3.48527672298135	3.30261232134342	3.42389536588464	0.283126386115889	0.60871315410236	0.830744946680157
Merged-chr17-43012905-4	chr17	43012801	43013001	+	760.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3654.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	3.94526019930829	3.9630515235355	3.94582839834889	3.828723222188	4.30498072878688	4.38714360009628	3.87813719082391	3.83780220078438	0.567423475558386	0.197683058798657	0.499044730396766
Merged-chr16-91740723-2	chr16	91740623	91740823	+	998.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	11352.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	3.76561691530728	3.6511097397149	3.56946515082227	3.55115432421162	3.27173608283647	3.38520158837245	3.50148123403879	3.61948177377873	-0.624315159664452	0.216491714057379	0.523052975625069
Merged-chr17-78936524-2	chr17	78936434	78936634	+	822.25	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028611)	promoter-TSS (NM_028611)	536.0	NM_001024806	12607.0	Mm.24169	NM_009882	ENSMUSG00000024081	Cebpz	AI848081|CBF2|Cbf|Cebpa-rs1	CCAAT/enhancer binding protein zeta	protein-coding	3.21943719631947	3.05543290793416	3.57700862936772	3.22065300562501	3.08725482005734	3.1410945804447	2.95219594889621	3.4827322067767	-0.369940364490365	0.534440533410169	0.789247551351738
Merged-chr11-4536826-4	chr11	4536743	4536943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028860, intron 1 of 17)	PB1D10|SINE|Alu	57972.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	5.53788433005684	5.04534292964381	5.46022922437433	5.33426916689831	5.36191062241214	5.26309232681655	5.29082697769803	5.5092998869682	0.0170523824248922	0.953749935828829	0.983547181850056
Merged-chr10-81545317-4	chr10	81545232	81545432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010301)	promoter-TSS (NM_010301)	-286.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	9.11463147045635	9.28640921625875	8.86946929320889	8.79385929268498	9.00871545430457	9.27464613189052	9.07909768017282	8.98431686479973	0.0763069138356218	0.657001035402403	0.856998180232144
Merged-chr5-8622483-6	chr5	8622384	8622584	+	909.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011076, intron 2 of 29)	CpG	468.0	NM_001347311	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	4.79245136909975	4.31635239286824	4.72851002720026	4.66078582009809	4.25676435444216	4.04539792778061	4.1305364941354	4.38361618980063	-0.992342638687083	0.0128969131455364	0.0945016863069934
Merged-chr9-21169095-4	chr9	21169024	21169224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	intron (NM_183408, intron 1 of 14)	3410.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	4.96369056328428	4.99394729616443	4.42280641956252	4.6262796974505	4.81313553298125	5.29500683230118	4.940275743193	5.12074414278822	0.557348363721536	0.115945159619212	0.376739729596271
Merged-chr16-78198924-4	chr16	78198802	78199002	+	962.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER119|DNA|hAT-Charlie	56552.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	4.95731765091419	5.13024436509738	4.65351749523743	5.16762337762719	4.8448107936394	4.49932703396853	4.63235045502952	5.19985937745318	-0.355426098289522	0.334681117230982	0.645157506515558
Merged-chr3-101924455-4	chr3	101924352	101924552	+	986.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039371)	promoter-TSS (NM_001039371)	1.0	NM_001039371	242126.0	Mm.90204	NM_001039371	ENSMUSG00000033147	Slc22a15	2610034P21Rik|4930477M19|A530052I06Rik|BB219042	solute carrier family 22 (organic anion/cation transporter), member 15	protein-coding	5.22289072769577	5.19165530799024	5.06242238297968	5.17870610573044	5.16416171163179	5.01573228363476	5.28494859531424	5.12593107722657	-0.025164200338354	0.932186367792987	0.975522199937325
Merged-chr6-31233459-4	chr6	31233359	31233559	+	881.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040260, intron 1 of 5)	L3|LINE|CR1	13108.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	4.20808069524256	4.04102597718509	4.25439276912094	4.52251088846195	4.59311649445495	4.334768753284	4.09512266946552	4.10980367954974	0.0667470038495361	0.875847963911547	0.953343358207453
Merged-chr10-130129182-4	chr10	130129088	130129288	+	903.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2133.0	NM_146674	258669.0	Mm.377631	NM_146674	ENSMUSG00000095804	Olfr824	MOR210-3	olfactory receptor 824	protein-coding	4.93576443507559	4.58715534771384	4.56335495232476	5.3708093828064	4.50557979780932	4.60625513320247	4.4072472771599	4.79691899115118	-0.72036431502323	0.0727309087193207	0.290136936150453
Merged-chr1-37997295-4	chr1	37997169	37997369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198303)	promoter-TSS (NM_198303)	-61.0	NM_172054	98258.0	Mm.28438	NM_172054	ENSMUSG00000058407	Txndc9	AI098020|APACD	thioredoxin domain containing 9	protein-coding	8.28011863275638	8.466196202578	7.93099307789524	7.99994927202768	8.40935225835963	8.52001026482742	8.38133573640447	8.29288390049708	0.277044624145112	0.126440923460836	0.395271574993143
Merged-chr1-37299824-4	chr1	37299751	37299951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290797)	promoter-TSS (NM_001290797)	13.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	6.75776299870378	6.64908400147686	6.42484006322933	6.43269795643094	6.6698294632317	6.86291280847483	6.65299967607955	6.65239471041808	0.207903217290604	0.326501670901192	0.637972505574722
Merged-chr17-45573904-4	chr17	45573818	45574018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008302)	promoter-TSS (NM_008302)	-657.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	6.31019422421493	6.44411897919631	5.87500521852014	6.33816927362866	6.97027701980491	6.78131259501304	6.67453668342478	6.79961973049266	0.792674432477791	0.000536143318181595	0.00816702818435025
Merged-chr11-75336876-2	chr11	75336776	75336976	+	803.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_026653, intron 4 of 16)	MTEa|LTR|ERVL-MaLR	11507.0	NM_001164223	68275.0	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	3.16227140077422	3.28730461665598	3.41298226504343	3.07360852220522	3.20744726552337	3.58715147007252	3.69942487850484	3.75865032478245	1.1793894141482	0.0294101558558093	0.165063915601537
Merged-chr13-90062077-2	chr13	90061977	90062177	+	871.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028012, exon 3 of 8)	exon (NM_028012, exon 3 of 8)	27531.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	3.7601391903217	3.38512210486064	3.14700175609853	3.40688748491555	3.38877849607719	3.78804602417282	3.39176979254338	3.46002715793006	0.242822892064312	0.653347543228451	0.854997557892684
Merged-chr1-155098128-4	chr1	155098035	155098235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010500, exon 1 of 1)	3' UTR (NM_010500, exon 1 of 1)	1501.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	7.43007760500988	7.68074728168554	7.37049925453492	7.05381856866732	7.7988748430207	7.85892491744086	7.78169986413011	7.53057676621891	0.469695115606795	0.0210725044201519	0.132618902928558
Merged-chr17-48324476-4	chr17	48324384	48324584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177083, exon 6 of 6)	3' UTR (NM_177083, exon 6 of 6)	8322.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	7.52693513433963	7.60165842477265	8.20625686062126	7.85779451838539	7.54044146099087	7.72471766327341	7.93891269097437	7.6491025344952	-0.140360362622576	0.504472206214479	0.770800870451296
Merged-chr1-128004595-4	chr1	128004488	128004688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 8 of 20)	B4A|SINE|B4	97883.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	6.38020916775153	6.56833469623218	6.26823332293346	6.58022752322962	6.5246902802513	6.30024556220485	6.63600038225526	6.3586289214685	-0.00169392168237194	0.993959485153055	0.997739983081298
Merged-chr6-129399293-3	chr6	129399213	129399413	+	897.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204253, intron 1 of 3)	RLTR21|LTR|ERVK	2016.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	2.94178720992649	2.8632177115262	3.07977133267141	3.00038947328008	3.43051959687065	3.63946950686685	3.25008954728994	3.37051044114274	1.70747111135663	0.00244041604513697	0.027265166171214
Merged-chr14-118664433-4	chr14	118664324	118664524	+	901.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033336, intron 3 of 30)	MTC|LTR|ERVL-MaLR	12507.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	3.63722545204306	3.61779537370362	4.08944196392755	4.08818977155333	3.97450495330163	3.56094044456241	4.11181273189024	3.95339340591695	0.0869034994682174	0.860209362317212	0.947128143348069
Merged-chr2-140790561-4	chr2	140790465	140790665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	-119089.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	5.83056578886747	6.05493924928506	5.48440218146145	5.74005183733403	5.7600947384491	6.0737098526675	5.91291125801382	5.540459475108	0.0613127238613544	0.825050222382583	0.932930565831813
Merged-chr1-152674032-4	chr1	152673935	152674135	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346118, intron 2 of 18)	intron (NM_001346118, intron 2 of 18)	-48818.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.01981137905028	4.3584613888992	4.99662880394603	5.31490092666674	4.16224903169648	4.02325171274313	4.36724132512015	4.70721844880273	-0.955464261997402	0.0585184799833591	0.254430815877803
Merged-chr9-120011263-4	chr9	120011168	120011368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	12330.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	7.48807156780115	7.24478541468314	6.72996507235288	6.91487826741057	7.36175184094399	7.34344210555978	7.51287478843118	7.37259743227146	0.375762150979157	0.0870814669456771	0.321809445808959
Merged-chr1-82761776-6	chr1	82761690	82761890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025453, intron 2 of 3)	intron (NM_025453, intron 2 of 3)	6666.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	4.98522900974392	4.90888562909626	4.8432423416067	4.82359979027273	4.88752986819571	5.15819048492209	4.85726653427809	5.04840861769165	0.201390888812641	0.525396237213235	0.783252235625498
Merged-chr4-137913550-5	chr4	137913477	137913677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 2 of 19)	CpG	51340.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	6.25222496449645	6.30490389658367	6.45013770915123	6.280997068805	5.97784184032825	5.74197917358489	5.47085134840171	5.46197446634124	-0.985828176966552	0.000189670046500607	0.00348041357047349
Merged-chr8-37062879-2	chr8	37062779	37062979	+	956.416626	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38641.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	3.14755215221361	3.04816901599926	3.06330782040484	2.42104664236133	4.65904094989429	4.31374116749762	4.26915078286511	4.17393586700888	7.1165871735052	1.11519616279106e-16	2.33466316680308e-14
Merged-chr7-28392824-4	chr7	28392716	28392916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026042)	promoter-TSS (NM_026042)	-126.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	8.7395534086481	8.8564420581056	8.73251568886797	8.48051469276695	8.77694345075096	8.94794738515053	8.76644866752318	8.59827558694303	0.0913182711034619	0.577074237945786	0.813924639099529
Merged-chr14-61803932-2	chr14	61803825	61804025	+	686.0	f0_balb.idr|f1_balb.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-121552.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	3.35256182086494	2.80903141878445	2.74776119653899	3.08021742650556	2.80984069855818	3.36754689634416	3.07312793466529	3.08331293221299	0.303912626260857	0.642008959869021	0.848955111735845
Merged-chr19-6141592-4	chr19	6141491	6141691	+	971.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019722)	promoter-TSS (NM_019722)	-454.0	NM_019722	56327.0	Mm.21071	NM_019722	ENSMUSG00000024944	Arl2	2610009M23Rik|AI115441|AW553335	ADP-ribosylation factor-like 2	protein-coding	4.87282294208496	5.04679499005095	4.68090757851047	4.68865796011723	5.20812797241371	4.5872367648356	4.73920537300018	5.03748470496343	0.208151426152475	0.559719334952836	0.803989779751616
Merged-chr12-34486172-4	chr12	34486051	34486251	+	854.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 4 of 27)	intron (NM_001271386, intron 4 of 27)	42738.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	3.94174468090924	3.9690476909198	3.88868724944059	4.03660614422362	4.20851260314031	4.01061840036893	4.39778701254285	4.22165231040471	0.647661332685634	0.115968618882386	0.376746786372172
Merged-chr4-149166714-4	chr4	149166614	149166814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356332)	promoter-TSS (NM_001356332)	-9.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	7.91264557210972	8.09112961558273	7.81719451648892	7.70554978208272	8.03923030740047	7.94743414526487	8.1214544020627	7.76460685027565	0.119442681279786	0.504779216358829	0.771023172558049
Merged-chr18-53312146-4	chr18	53312041	53312241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	ORR1D2|LTR|ERVL-MaLR	66479.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	7.47730134193929	7.08084882437651	7.38428422744931	7.74440137547982	6.97926971617922	7.0200717818442	7.50337564063384	7.26653670759131	-0.330353829320154	0.14532682819074	0.424764350127399
Merged-chr5-140748559-4	chr5	140748452	140748652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 5 of 7)	intron (NM_173405, intron 5 of 7)	24425.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	6.66291885240977	6.22193106536253	6.50093401975107	6.73002927130211	6.05886965147073	5.92370793596092	6.01700409671982	6.34493391306283	-0.683755828655018	0.00540013273193962	0.0502715709664126
Merged-chr2-152653314-1	chr2	152653214	152653414	+	820.0	f0_balb.idr	Intergenic	Intergenic	-16147.0	NM_010376	14950.0	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	3.35038538774074	3.51041115348892	3.75393565983831	4.00410920598086	3.01164600552044	2.96906762204418	3.08159567512287	3.46209965187625	-2.00681384449165	0.00151935926982003	0.0188704368289164
Merged-chr6-120159337-4	chr6	120159221	120159421	+	930.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-34502.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	5.12906762017017	4.59847777949063	5.15764754334467	4.9975217551519	4.44568594878514	4.47015315590299	4.41889491905142	4.73514584175155	-0.984940087850124	0.0071644614927237	0.0619860465042641
Merged-chr11-83570401-4	chr11	83570293	83570493	+	818.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8243.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	4.49131927572722	4.25902831596443	4.01333140879847	4.08466675156054	3.92626854225337	4.24049458860928	4.14443357360737	4.41450749036094	-0.0799710818279553	0.850853324289426	0.94375183545126
Merged-chr1-134703687-3	chr1	134703576	134703776	+	794.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009307, intron 2 of 9)	intron (NM_009307, intron 2 of 9)	-5624.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	3.845469738564	3.95627182689528	4.08773907971146	4.40218071100379	3.58788738283757	3.45318020438014	3.93133371621558	4.24973639416105	-0.700300112735943	0.180160106177951	0.476501790934912
Merged-chr11-65787811-2	chr11	65787711	65787911	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316368, intron 1 of 10)	CpG	548.0	NM_009157	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	3.90976029684527	4.37931062177954	4.75647603608079	4.12782651538461	4.49054082577047	4.63669013854975	4.26951861908523	4.65152378014649	0.449418713574556	0.292041317818812	0.604488172040016
Merged-chr8-61896960-4	chr8	61896853	61897053	+	898.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 1 of 21)	intron (NM_001293772, intron 1 of 21)	5737.0	NM_001081390	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	4.56250160374699	4.88679810240687	4.79210247227312	4.98844489813938	4.57551497742189	4.24833070280006	4.76900484963596	4.33298064832716	-0.700687742689971	0.0632387933756192	0.266884505732432
Merged-chr19-3322745-1	chr19	3322645	3322845	+	850.0	f0_c57.idr	promoter-TSS (NM_013495)	promoter-TSS (NM_013495)	-556.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	3.91633413458886	3.80195304630317	3.5988128810288	3.65631455066317	4.1091994669125	3.77559700034541	3.8999460698167	3.81711394718791	0.497925093053397	0.272172359647858	0.583708684767249
Merged-chr8-70893781-4	chr8	70893684	70893884	+	918.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029751)	TTS (NM_029751)	-1027.0	NM_053248	114479.0	Mm.172923	NM_053248	ENSMUSG00000000792	Slc5a5	NIS	solute carrier family 5 (sodium iodide symporter), member 5	protein-coding	4.29095268376844	4.60243737091856	4.34089806274921	4.21395892999094	4.84164575192807	4.92285245824285	4.58167886481867	4.78397048438805	0.938953404297422	0.00919720821013516	0.0743242601259322
Merged-chr1-143702892-4	chr1	143702787	143702987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145991)	promoter-TSS (NM_145991)	6.0	NM_145991	214498.0	Mm.156727	NM_145991	ENSMUSG00000026361	Cdc73	8430414L16Rik|C130030P16Rik|C81219|Hrpt2	cell division cycle 73, Paf1/RNA polymerase II complex component	protein-coding	8.58404508330473	8.43271878778883	8.45012997717739	8.60941503032481	8.37627043983574	8.65823912041864	8.68829669193179	8.15294659998133	-0.0481022463954788	0.78577833034246	0.916659823250393
Merged-chr6-86572579-4	chr6	86572453	86572653	+	963.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	45152.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	5.2147237247598	5.48710226492935	4.98624405439161	4.59127187790868	5.18888542407601	5.41748242138873	4.85071523357174	4.87060677224845	0.00158503525116367	0.996636476205177	0.998649443287934
Merged-chr1-152021043-4	chr1	152020942	152021142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 1 of 5)	MTD|LTR|ERVL-MaLR	69278.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	5.3395866331744	5.40161992044255	5.45132499992158	5.32028048471328	5.24463352202923	4.76027423191466	5.3972562709043	5.27755273685306	-0.323904403028683	0.291329971149556	0.603632172341696
Merged-chr2-170322257-4	chr2	170322140	170322340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34121.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	6.6404359734539	6.76303159680215	6.81151283470014	6.68915811080749	6.38555466513335	6.32575898886348	6.46389812427418	6.63687123955174	-0.390392046484869	0.0619395482615911	0.263290242204347
Merged-chr16-55820337-4	chr16	55820237	55820437	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 2 of 12)	intron (NM_001159395, intron 2 of 12)	1801.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	4.95346312859333	4.99136514782794	4.91879933848645	4.39544852579242	5.32680198866183	4.81902578464849	5.3408484670236	4.8028508098277	0.559574316993612	0.129735873714832	0.400906041293221
Merged-chr18-56469434-4	chr18	56469273	56469473	+	936.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	37241.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	4.07545286732968	3.60395554990643	3.9884114062621	3.93933913132335	3.8650658740655	3.61422075377653	3.66823865055176	4.11505401843417	-0.222860999988528	0.640668945427024	0.848256856489403
Merged-chr10-23812279-4	chr10	23812223	23812423	+	834.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183116, intron 6 of 13)	intron (NM_183116, intron 6 of 13)	15337.0	NM_001358812	76306.0	Mm.294271	NM_183116	ENSMUSG00000037455	Slc18b1	1110021L09Rik	solute carrier family 18, subfamily B, member 1	protein-coding	3.68413220114733	3.34429379129366	3.45988964827135	3.59821421867994	3.3596706609975	3.75108586408151	3.90139420427181	3.9171424363086	0.66227891820162	0.195685281163483	0.496530822327662
Merged-chr4-141077871-4	chr4	141077777	141077977	+	926.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149724, intron 1 of 8)	CpG	480.0	NR_149724	66147.0	Mm.21187	NM_025383	ENSMUSG00000028923	Necap2	1110005F07Rik|AA409105|C78898|NECAP-2	NECAP endocytosis associated 2	protein-coding	5.24763492880192	4.66458436716632	4.91906945610999	4.25332314932101	5.1631956106619	4.91116652879428	4.63202755282124	4.69197191045203	0.128157274549582	0.754318103967472	0.903245265587213
Merged-chr8-33618040-4	chr8	33617946	33618146	+	858.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017374, intron 6 of 6)	B3|SINE|B2	18425.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	3.87539480468468	3.63449618155569	3.87596361953385	3.74852418824315	3.87352742708816	3.59572261308612	3.99659592339752	4.05514487757513	0.31727801567273	0.486300167883274	0.760084090940376
Merged-chr15-57692119-3	chr15	57692018	57692218	+	906.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2549.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	4.11728936070356	3.86444285264308	3.79060266968827	3.79243100158556	3.57242776885373	4.1113805446474	3.66557757760287	3.93888209427645	-0.174011352373149	0.712914871427672	0.88513112913571
Merged-chr8-14892831-4	chr8	14892720	14892920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	4284.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	6.671460505267	6.80674526648244	6.80326450427953	6.92097153763785	6.79401273329953	6.73771883221901	6.47638235909558	6.66788554164877	-0.189529667559681	0.357169031037366	0.663385811659022
Merged-chr2-116980697-3	chr2	116980603	116980803	+	734.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80551.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	3.90885143546495	3.70496579442535	3.39359057780392	3.48135132087239	3.71207991875236	3.50818960099041	3.55725902291879	3.67522130526175	-0.0334357887303329	0.946666231562741	0.98095209334417
Merged-chr16-57547444-4	chr16	57547308	57547508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-1834.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.39759861686262	5.83604268754965	7.17845786256091	7.23059058982842	5.53482607234079	5.83518420062833	6.14150876228461	5.79081192024549	-1.42044115550962	4.39274863822367e-05	0.00101057354660673
Merged-chr11-46488383-3	chr11	46488280	46488480	+	866.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33449.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	3.54463010592252	3.77316484916102	3.80620343600117	3.58643190644138	3.41968001008825	3.6618387425789	3.69263978838751	3.80387960994927	-0.101343995542379	0.834016079327123	0.936661877297498
Merged-chr1-60745840-3	chr1	60745769	60745969	+	801.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007642)	promoter-TSS (NM_007642)	-519.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	2.96255702327069	2.97868282069612	2.89777010945358	3.12945992751337	3.03027744000442	3.07063685678186	3.01429487697733	3.24482081077791	0.352290485574066	0.543943991115696	0.79501826167606
Merged-chr7-102258331-4	chr7	102258249	102258449	+	879.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8231.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	4.41818372433937	4.97058367852704	4.41885450675594	4.41508490532421	4.6621538769253	4.64032091535886	4.64885510300087	4.81162734076924	0.24904773958255	0.504622349037311	0.770888948942188
Merged-chr1-179842769-4	chr1	179842657	179842857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38742.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	7.6450785239632	7.50536738846703	7.74890952223472	7.70511936166785	7.44071207652289	7.39496157266771	7.32395309216651	7.40582367321013	-0.347936527526527	0.0428063235330378	0.210392991489994
Merged-chr1-165683536-4	chr1	165683439	165683639	+	765.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	B3A|SINE|B2	24555.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	3.86518789918016	4.2264538778273	3.70285100513359	3.65021355131705	4.11410993393071	4.08714515510832	3.8991095345115	3.58032285044232	0.174192350130939	0.721160212837233	0.888656454642962
Merged-chr9-84466936-3	chr9	84466828	84467028	+	819.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-307470.0	NR_040739	75253.0	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA	3.61740785487007	3.64635326801748	3.5534844932316	3.22856230617789	3.87044651438435	4.17513837810476	4.34629731983421	4.49985398053129	2.09613652489725	1.21993057870045e-05	0.000329663776238875
Merged-chr11-57980495-4	chr11	57980409	57980609	+	897.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28555.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	3.81374473776927	4.0502028694761	4.13615715270631	3.7647695098954	4.48447954637489	3.87577077504289	4.44810557570389	4.66886751538191	1.1582059541409	0.00866445210298301	0.0711827142472562
Merged-chr4-141623948-4	chr4	141623831	141624031	+	979.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013780)	promoter-TSS (NM_001013780)	-97.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	5.35486636976628	4.56390819832262	5.09562677862602	5.05838945063652	4.94317548125871	4.98604754202803	4.97119663819489	5.21435052899702	-0.0258065875105798	0.940268111898283	0.978512857827213
Merged-chr8-14643246-4	chr8	14643133	14643333	+	983.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	MTE2a|LTR|ERVL-MaLR	-245303.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	4.87349731578188	5.03189663964411	5.10796066712377	5.03944192868015	5.82517178258376	5.65134573915654	5.30968852407577	5.7804453377882	1.14322765548299	0.000105362415621938	0.00212212546167344
Merged-chr11-74830438-4	chr11	74830340	74830540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010813)	promoter-TSS (NM_010813)	-484.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	8.28312068255933	8.68703206147582	8.46174743875643	8.32967935032534	8.51795567150357	8.66444970830144	8.4858466460036	8.00954818633523	-0.00880012270815832	0.963672501335845	0.987052580440967
Merged-chr2-167497478-4	chr2	167497345	167497545	+	953.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030743, intron 1 of 7)	B3|SINE|B2	-4571.0	NM_001356523	263876.0	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	3.85248650634873	4.48760640046677	3.85297566409693	4.13936506858369	4.55470806429303	4.69871841216422	4.21506961902208	4.70076766528991	1.02846495962479	0.0188102029694076	0.122787346438559
Merged-chr4-144893591-5	chr4	144893553	144893753	+	907.0399779999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001172424, exon 2 of 7)	exon (NM_001172424, exon 2 of 7)	516.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	3.37718228912836	3.20281234980142	3.27209159136264	3.22260320649635	3.08674995263415	3.06932089823715	3.08460314438446	3.37570379925951	-0.418151418038154	0.451079840661526	0.735774833837515
Merged-chr4-3677376-4	chr4	3677310	3677510	+	905.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010747)	promoter-TSS (NM_010747)	-711.0	NM_001111096	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	4.3740474074772	3.97705777388885	4.33117124150025	3.78472965078086	4.5061992997582	4.26921798372795	4.47571326169207	4.86213299572701	1.01010476826923	0.0177145808585118	0.117885765793568
Merged-chr19-6296758-4	chr19	6296637	6296837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 3 of 4)	intron (NM_010119, intron 3 of 4)	-9720.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	6.60449114406363	7.36253724767145	6.28369201252135	5.41446800394747	7.23232912698849	7.40525109095907	6.42121463694649	5.84974565086057	0.358341753904747	0.612710600726584	0.832832725096038
Merged-chr10-99097574-3	chr10	99097453	99097653	+	868.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9529.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	3.45097690792513	3.43095606390229	3.56119645009034	3.56446032192259	3.60091790849902	3.62214780357888	3.5470041868464	3.44964193006556	0.165317862705128	0.732883011907385	0.894231347787915
Merged-chr4-141735103-4	chr4	141735003	141735203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11572.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	6.41470696225189	5.93219412670624	6.05614867012752	6.11830363717634	6.54456843586605	6.91117989182389	6.79246960243687	6.41123790450418	0.792814779375336	0.000962574283578859	0.013043207656299
Merged-chr15-83086100-4	chr15	83085993	83086193	+	886.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14112.0	NM_023475	68607.0	Mm.30056	NM_023475	ENSMUSG00000058586	Serhl	0610008B10Rik|1110019M09Rik|AU019786	serine hydrolase-like	protein-coding	4.56589509543262	5.07108253270943	4.8481403612561	4.39876218995903	5.17522634956017	4.5580057555948	4.58961442853645	5.26951087830243	0.413667047549029	0.301882984632013	0.614128124928464
Merged-chr18-4170405-4	chr18	4170309	4170509	+	885.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026092, intron 3 of 4)	intron (NM_026092, intron 3 of 4)	4577.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	4.63907101202919	4.43753112436575	4.63983049531453	4.54934171379366	4.39842790306939	4.43223775759319	4.46254415955804	4.48004842705129	-0.28190569623948	0.431717126295589	0.721833955805449
Merged-chr9-44325405-3	chr9	44325284	44325484	+	765.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1461.0	NM_007875	13478.0	Mm.18353	NM_007875	ENSMUSG00000032123	Dpagt1	AU021132|Dpagt2|GPT|Gnpta	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	protein-coding	3.03247244869808	3.16056163003603	3.161850628412	2.94272696413055	3.46733864604832	3.44904749305923	3.26648654008459	3.27761170442427	1.14700471081714	0.0332045100081438	0.178968939714499
Merged-chr8-10172493-4	chr8	10172370	10172570	+	940.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001319151, intron 1 of 34)	intron (NM_001319151, intron 1 of 34)	18559.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	4.34597329582922	4.56159767453048	4.14614302767482	4.39231403971977	4.6870641254565	4.76974008886705	4.41649139455244	4.6703275617769	0.598755225818276	0.106354090333923	0.359484962154748
Merged-chr7-141444115-4	chr7	141444022	141444222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360523)	promoter-TSS (NM_001360523)	-97.0	NR_153591	57913.0	Mm.334321	NM_022654	ENSMUSG00000025507	Pidd1	1200011D09Rik|AU042446|Lrdd|Pidd	p53 induced death domain protein 1	protein-coding	6.29673229515226	5.89949508374436	6.13921645628555	6.09814091434191	5.70795114947271	5.43370228663241	5.71559249329325	5.81549205513469	-0.695845990181145	0.00694616029945912	0.0605833530149737
Merged-chr15-96758034-4	chr15	96757961	96758161	+	963.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58333.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	5.02958952739611	4.18108061982887	4.17523167950064	4.35021230492333	4.32972028624722	4.08130469482786	4.34420754659395	4.52575713277774	-0.34462507758652	0.437756936977054	0.725980918385128
Merged-chr6-42373074-4	chr6	42372887	42373087	+	910.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023580, intron 1 of 17)	intron (NM_023580, intron 1 of 17)	281.0	NM_023580	13835.0	Mm.133330	NM_023580	ENSMUSG00000029859	Epha1	5730453L17Rik|AL033318|Eph|Esk	Eph receptor A1	protein-coding	3.39297765632635	3.50618364985272	3.27379462946709	3.38095733851954	3.59748046193385	3.5065830281553	3.38093145416734	3.55285033850877	0.418674377271331	0.401274553750112	0.698902185040211
Merged-chr16-58727926-4	chr16	58727817	58728017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_171826)	promoter-TSS (NM_171826)	7.0	NM_001252451	224250.0	Mm.29482	NM_171826	ENSMUSG00000022744	Cldnd1	1110019C08Rik|AA407103|AI849195|AW489850|Cldn25	claudin domain containing 1	protein-coding	8.75374450361593	8.75166524835297	8.65462114879224	9.18717726667223	8.71814382653548	8.67747453264772	9.25178798655108	8.62615581130255	-0.0185647288290164	0.927731618591155	0.973615800862715
Merged-chr6-98113901-4	chr6	98113806	98114006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122123.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	6.14304446537243	6.31514493544225	6.64315803435144	6.52826549144996	6.12690079905104	6.21192576734417	6.37699442451222	6.29821743512254	-0.262549546104086	0.263219480885164	0.575138121007032
Merged-chr15-53345640-4	chr15	53345500	53345700	+	856.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010162, exon 1 of 11)	5' UTR (NM_010162, exon 1 of 11)	583.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	3.34355777614502	3.5947710877439	3.28294759045437	3.43360179345121	3.52960739063437	3.51584173899286	3.33231513251537	3.65836017202799	0.310247321903092	0.541864929336239	0.793491190310592
Merged-chr11-83078227-4	chr11	83078143	83078343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13131.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	7.54525273015798	7.69403435716542	7.40524251157616	7.62367556810579	7.34221921660642	7.50006461754699	7.45493101009571	7.42964655984797	-0.196559410477687	0.260327010541453	0.572084479263047
Merged-chr10-34280779-4	chr10	34280693	34280893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1397.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	5.44954012375088	5.81170508319718	5.53596319286968	5.20255060219903	5.68957856271407	5.62648898962494	5.73301039349485	5.58597275938097	0.267588007400452	0.35027064992254	0.657851515629344
Merged-chr11-107339581-4	chr11	107339504	107339704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	131116.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	6.58247377531635	6.13350754303446	6.45560939820524	6.43001412096838	6.37531258984869	6.52633483980762	6.57991167792799	6.23075668954063	0.0359677734044937	0.875274175057601	0.953097748197484
Merged-chr7-43444036-4	chr7	43443943	43444143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026695)	promoter-TSS (NM_026695)	-29.0	NM_026695	110826.0	Mm.30200	NM_026695	ENSMUSG00000004610	Etfb	0610009I16Rik|2810441H06Rik	electron transferring flavoprotein, beta polypeptide	protein-coding	8.65666025533949	8.58792409115479	8.44317289111933	8.60441839004725	8.68244691983269	8.60485512793897	8.83830999081189	8.42731973264586	0.0898955306701645	0.573698101482095	0.811967547495324
Merged-chr11-117969236-4	chr11	117969126	117969326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007707, exon 1 of 2)	5' UTR (NM_007707, exon 1 of 2)	140.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	7.48536377934423	7.75639070608179	6.77337908131982	6.76368925937524	7.5064047024332	7.654616377963	7.04339154514464	6.8883743493135	0.061574232774698	0.833435986929638	0.936308313522916
Merged-chr5-64289425-4	chr5	64289314	64289514	+	983.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	59057.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.90313981001159	4.83557300833961	4.67618648948491	4.60547771229409	4.99307039055021	4.89212861708788	4.94739850235685	4.93490400438946	0.402201717799495	0.215146216415021	0.521128855176098
Merged-chr11-5740771-4	chr11	5740679	5740879	+	925.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	CpG	397.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	4.83694199461594	4.80016035380876	4.87231652717893	4.2360022568373	4.65513292370839	4.82411588040138	4.77911339757206	4.79898560626039	0.148723817518532	0.691768046777789	0.87467626526963
Merged-chr12-55870153-4	chr12	55870051	55870251	+	824.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001037756)	TTS (NM_001037756)	33785.0	NR_155205	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	4.01587711568934	4.11845487641411	3.96864386293183	4.08160116868458	3.60952447903855	3.8182266299665	4.08860945695727	4.06007504043263	-0.411720215494499	0.357691095241734	0.663837540417421
Merged-chr17-32073531-3	chr17	32073417	32073617	+	812.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17906.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	3.40721739654253	3.34017879782572	3.15140852990547	3.35595870894479	3.61471982973638	3.58061980128283	3.50508460658071	3.80288721703476	1.02477257906129	0.0420697705994363	0.207834827977323
Merged-chr3-69182572-4	chr3	69182483	69182683	+	925.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39836.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	5.64435559894597	5.92045042885309	6.30595876164695	6.94801429872934	4.7678715404115	4.83673583036273	4.99418194826819	5.24637589236828	-2.29802254832903	6.8150186206606e-10	4.52928301027078e-08
Merged-chr3-38013109-4	chr3	38012966	38013166	+	931.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114253.0	NR_040559	626410.0	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	3.96205376779951	3.97004467738987	4.30258435996755	3.85037951600606	3.92725376601157	3.87122679709624	3.94582236937301	3.85904240911352	-0.327130623716977	0.458576964233006	0.74144172337427
Merged-chr6-87500437-4	chr6	87500337	87500537	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-4110.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	5.50779267839591	5.5622783949597	5.77519002967919	5.5588583048874	5.40478614831234	5.20260630384596	5.27800174735709	5.36229125140524	-0.491430788577544	0.0766606355493597	0.29927205494257
Merged-chr17-84978666-3	chr17	84978564	84978764	+	738.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159498, intron 2 of 7)	intron (NM_001159498, intron 2 of 7)	13639.0	NM_001159498	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	3.80455063480284	3.42421082892099	3.85123027525941	3.71862384287559	3.88023694971527	3.47454186740387	3.53233368232466	3.59983987493384	-0.201192893131724	0.688764897906923	0.872980495973815
Merged-chr19-16033491-2	chr19	16033389	16033589	+	846.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	48414.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	3.40010416184414	3.54110107358016	3.40056417442238	3.10576704542029	3.4498324251633	3.12448678660531	3.63669179178681	3.39870371475439	0.186453461173992	0.735017512921217	0.895423624841161
Merged-chr14-45179809-4	chr14	45179703	45179903	+	919.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310534, intron 7 of 20)	intron (NM_001310534, intron 7 of 20)	39622.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	5.17835639854893	4.66571109081233	5.08791892826281	5.72198545961095	4.73700317389754	4.63255045236346	4.61760836387487	4.91598125726733	-0.996571225050111	0.0104530189397622	0.0815381298754341
Merged-chr13-37537506-3	chr13	37537413	37537613	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	192168.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.68795253203423	3.68608664624924	3.76836684329838	2.71717124097994	5.87609481281523	5.88354912056635	5.75114117234305	5.87022922077258	6.64390313291603	1.09966378789332e-33	1.77893110814679e-30
Merged-chr10-69309297-4	chr10	69309183	69309383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43629.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	5.95960163715827	5.44997700612695	6.0867830506823	6.37815116588891	5.81331856485831	5.66483379702918	6.03549172167656	6.23285172221334	-0.111852996113585	0.714491794052696	0.885865917211766
Merged-chr10-121376062-4	chr10	121375950	121376150	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 3 of 13)	intron (NM_029364, intron 3 of 13)	10960.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	5.54163764656885	5.35522573072605	5.04764469979611	5.89640774886483	5.62313764746813	5.06696876986885	5.54009064807592	5.25070668391597	-0.212533027198277	0.535373360834839	0.78969123944925
Merged-chr8-14233189-4	chr8	14233085	14233285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 2 of 15)	intron (NM_172910, intron 2 of 15)	137310.0	NM_172910	244310.0	Mm.404697	NM_172910	ENSMUSG00000047495	Dlgap2	6430596N04Rik|Dap-2|Dap2|Sapap2	DLG associated protein 2	protein-coding	4.96868323796707	5.20645394899416	5.14481186392366	5.41348865545417	5.23696101365618	4.71526201052617	5.43421729124013	5.37926940728476	0.0305472751836426	0.927249963513601	0.973427812288727
Merged-chr7-142068758-3	chr7	142068667	142068867	+	921.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7733.0	NM_028308	101513.0	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	3.3015052049353	3.1938227103064	3.6240539621873	3.76693599435942	3.18302160201733	3.28603069881366	3.2286631383062	3.6682852880964	-0.500303646728958	0.386364318312714	0.687552275421561
Merged-chr11-53805966-4	chr11	53805872	53806072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	35499.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	7.58724202423679	8.12539040745492	7.76573046037004	7.64355993635407	8.06540665715815	7.56973182323827	8.11058660286457	7.59234981315084	0.0877606544000294	0.686030901695109	0.871760528240684
Merged-chr2-166713965-4	chr2	166713881	166714081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177782)	promoter-TSS (NM_177782)	-149.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	7.93889133434732	8.47219055480188	8.05240671540155	7.68316844730903	8.27245494378128	8.58419212199776	8.33643565272617	8.22773948476905	0.377161213819061	0.0713258465837003	0.286620134024796
Merged-chr1-7088911-4	chr1	7088828	7089028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183028)	promoter-TSS (NM_183028)	8.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	9.9538308825373	9.87941219243731	9.9995547569402	9.88826919204421	10.1969001908477	10.25681888881	10.1985587298968	9.95890590078089	0.277403200922679	0.0421186661419621	0.208033067609376
Merged-chr16-33966356-3	chr16	33966278	33966478	+	765.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009471, intron 1 of 5)	intron (NM_009471, intron 1 of 5)	660.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	3.70762808066188	3.69847369793114	3.46142692276316	3.37060726045579	3.00727004158721	3.63309249328357	3.07754240225537	3.15531543549254	-1.17637976699551	0.0468655834743488	0.222538049774561
Merged-chr4-155803598-4	chr4	155803516	155803716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_025570, exon 2 of 5)	5' UTR (NM_025570, exon 2 of 5)	738.0	NM_025570	66448.0	Mm.23825	NM_025570	ENSMUSG00000029066	Mrpl20	2610008D01Rik|4930425I20Rik	mitochondrial ribosomal protein L20	protein-coding	7.25933139741393	7.27124073480956	7.04014883795581	6.90447580036644	7.25274844049886	7.59666516830133	7.22428776370626	7.26610144962445	0.300301480467953	0.136611139717899	0.411121440638438
Merged-chr1-43098601-4	chr1	43098510	43098710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133818)	promoter-TSS (NM_133818)	18.0	NM_001013025	73122.0	Mm.246069	NM_001013025	ENSMUSG00000070939	Tgfbrap1	3110018K12Rik|AU024090|AU042859|AW742551|Trap1	transforming growth factor, beta receptor associated protein 1	protein-coding	7.85590094708474	8.06430326170703	7.9483378384529	7.68752357161536	7.43064267591625	7.75926512847082	7.68937409137498	7.5397020827925	-0.373489228403432	0.0414043552154905	0.20606352956813
Merged-chr16-18066375-4	chr16	18066278	18066478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289813)	promoter-TSS (NM_001289813)	-25.0	NR_110380	13353.0	Mm.27155	NM_010047	ENSMUSG00000003531	Dgcr6	-	DiGeorge syndrome critical region gene 6	protein-coding	6.94652311360567	6.66952442345734	6.75693477551739	6.93567392542968	6.90707834004851	6.97689011925837	6.99775261974466	6.70721444581583	0.0898009347361354	0.656850597724973	0.856913004429998
Merged-chr1-152573865-4	chr1	152573762	152573962	+	890.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	51355.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.84622173225026	4.89877723134321	4.4179338386485	5.00878503763481	4.45716065333801	4.40036593588981	4.35194408279207	4.58813860267487	-0.814223073711264	0.0294141629622487	0.165063915601537
Merged-chr1-58802522-4	chr1	58802413	58802613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080126)	promoter-TSS (NM_001080126)	11.0	NM_001277926	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	7.17660583286562	7.13249243624126	6.95842149797227	7.3217086655824	7.09171696484947	7.05275872306164	7.36577301680318	7.21685198612549	0.0292565667395358	0.881161450535729	0.955322489265647
Merged-chr15-77839672-6	chr15	77839598	77839798	+	922.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	2477.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	3.61828251785126	3.59970229591341	3.78768315479486	3.8537091182998	4.20464308425936	3.90770459547816	3.77244968818471	4.06835547981245	0.775845762786762	0.0912767399410678	0.330131456924048
Merged-chr1-24469699-4	chr1	24469559	24469759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 11 of 50)	intron (NM_007733, intron 11 of 50)	117778.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	6.66597857700508	6.92239019772469	6.86329066409351	7.04491846844557	6.62365435699156	6.71663622896906	6.32699264857437	6.19018558931961	-0.580102093246669	0.0110870550146213	0.0849204227790518
Merged-chr12-34712680-3	chr12	34712599	34712799	+	739.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	MIR|SINE|MIR	-183810.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	3.38516543111433	3.10666240373314	3.6386105215516	3.15167713073741	3.54145267634949	3.31855386602734	3.42641388111084	3.32666648717438	0.290403087634769	0.595986543967491	0.824299048131937
Merged-chr10-40073808-4	chr10	40073717	40073917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 3 of 5)	RSINE1|SINE|B4	-48549.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	7.33175098865931	7.51033458607311	7.12280618999991	7.61176436549239	7.29468757686699	7.09183853820088	7.25522036601176	7.19936439262793	-0.274488084277657	0.162232271512953	0.451375165305886
Merged-chr10-43752215-4	chr10	43752122	43752322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040581, intron 1 of 3)	intron (NR_040581, intron 1 of 3)	6064.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	5.38577869800642	5.35034543831311	5.73519622825541	5.79182767417703	5.49011047175598	5.70685930709387	5.63421777457299	5.47222258492436	-0.0344645463794583	0.903467366184322	0.964287824952031
Merged-chr17-29032588-4	chr17	29032504	29032704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013663)	promoter-TSS (NM_013663)	-56.0	NM_013663	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	7.34097203155513	7.73625083200522	7.30985921998672	7.19415872303674	7.97585177564567	7.87026873982362	7.64736749100857	7.53383729469394	0.480731623533582	0.0198086400995429	0.1272563147354
Merged-chr16-91789915-4	chr16	91789802	91790002	+	992.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 4 of 15)	ORR1D2|LTR|ERVL-MaLR	60531.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	5.13149502507324	4.98267559230236	4.81510418606067	5.48402035729689	5.19708894165817	4.86870468199271	4.83173399591697	4.96257775005717	-0.319395040825865	0.360767859293764	0.665986188512651
Merged-chr10-111540180-4	chr10	111540069	111540269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33883.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	8.38851203756778	8.68873779387589	8.40054162618139	8.56921548991455	8.66184234721515	8.62526552365456	8.47338053692282	8.43182064339834	0.0405166502051638	0.799814605610831	0.922665648246429
Merged-chr4-133744825-3	chr4	133744777	133744977	+	706.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 1 of 19)	PB1D9|SINE|Alu	8734.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	3.10320918108285	3.25195255263226	3.10363562753545	2.82855727966411	3.11606880870542	2.96532151604535	2.78057704569087	2.78718582205887	-0.633376838022598	0.319648632277198	0.631524558708573
Merged-chr18-62985455-4	chr18	62985377	62985577	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028017, intron 5 of 11)	intron (NM_028017, intron 5 of 11)	7561.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	5.42028160690039	5.33057559870034	5.18894288154086	5.0809263864896	5.33048543737821	4.96070555045023	5.16349619289099	5.21683762621873	-0.12133690597082	0.691189777549894	0.87434437438054
Merged-chr6-56653309-4	chr6	56653228	56653428	+	882.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51371.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	4.92260953086434	4.44986629753393	4.95321170062447	4.42137440684855	4.23910027901069	4.28991775807818	4.59567664328754	4.36040144056549	-0.72737046046223	0.0700560085598587	0.283324808709215
Merged-chr11-19965085-2	chr11	19964985	19965185	+	995.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	40643.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	3.5072838957466	4.37708770961311	3.63734266184025	3.32978334432152	4.34940500951455	4.2310155494869	3.99494752997997	3.69588756862678	0.815978796110238	0.14587953714655	0.425690032582665
Merged-chr5-113777060-4	chr5	113776983	113777183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025526, intron 4 of 4)	intron (NM_025526, intron 4 of 4)	4271.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	7.50558296677304	7.42668425985536	7.56075267392526	7.54911264090874	7.3796782044297	7.18434833673869	7.67208348671454	7.60719193097192	-0.0501803814165809	0.788963385159782	0.918274700744505
Merged-chr12-79626887-4	chr12	79626783	79626983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	297850.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	5.41958548479615	5.0221578366678	4.86101589943669	4.50508453225292	4.87036758884611	4.99910667725075	4.97674586396833	4.56873307260813	-0.2334959191316	0.542783542933508	0.79392536018051
Merged-chr1-128724710-4	chr1	128724598	128724798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-132399.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	7.51647526693564	7.27961530603891	8.09304177661543	7.89948226402844	7.63767649968599	7.91237213011725	7.68126784446857	7.68919525481071	-0.00888952021836528	0.967679150679027	0.988567409633045
Merged-chr6-90550716-4	chr6	90550612	90550812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027406)	promoter-TSS (NM_027406)	-81.0	NM_001356412	107747.0	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	6.45062916495402	6.41194163846305	6.41681536130816	6.89059563937799	6.63728750669646	6.34055768526323	6.72179160675987	6.16091074069631	-0.126414276580318	0.617561322209131	0.835628419008512
Merged-chr19-5560183-3	chr19	5560068	5560268	+	838.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019935, intron 1 of 3)	CpG	407.0	NM_019935	18426.0	Mm.280225	NM_019935	ENSMUSG00000024922	Ovol1	BB147136|Ovo1|movo1	ovo like zinc finger 1	protein-coding	3.05213746529888	2.93134811241025	3.20943114423596	2.43925399777966	2.7464098201293	2.77751540267269	2.5852320746065	3.0507487027292	-0.614170770510703	0.397583738014043	0.695966027419521
Merged-chr15-63494712-3	chr15	63494609	63494809	+	997.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15101.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	4.52415784168396	4.33276404662648	4.67781117392757	4.49182187401875	3.12621623045083	3.29789000379703	3.32572305879173	3.2553016580833	-5.37397339925668	3.84687127284376e-09	2.21713724963357e-07
Merged-chr8-73314076-4	chr8	73313964	73314164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	39476.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	6.38807130412018	6.28158287287258	6.48805865985624	6.22346004960196	6.63118763305396	5.9659700632407	6.3564430826172	5.83529790753583	-0.1356393931088	0.614581770922327	0.834006632206214
Merged-chr12-105033358-4	chr12	105033238	105033438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028419, intron 1 of 1)	intron (NM_028419, intron 1 of 1)	720.0	NM_028419	73046.0	Mm.29128	NM_028419	ENSMUSG00000021102	Glrx5	-	glutaredoxin 5	protein-coding	5.37728066574934	5.57397334834688	5.67346569270405	5.6417073720462	5.203746286551	5.13569470346336	5.66814301619715	5.59559653489873	-0.276359879464337	0.349121920901695	0.656765556493198
Merged-chr11-114765350-4	chr11	114765237	114765437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102615)	promoter-TSS (NM_001102615)	-52.0	NM_001102615	286942.0	Mm.308713	NM_001102615	ENSMUSG00000010021	Kif19a	Kif19	kinesin family member 19A	protein-coding	6.80556220351051	6.42241680065269	6.24905611098113	6.25409178718531	6.52558480744892	6.46550154948103	6.48554404312337	6.43060195076469	0.0551830203691978	0.813345328023719	0.927857767644014
Merged-chr9-75630872-4	chr9	75630768	75630968	+	974.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027309, intron 1 of 2)	intron (NM_027309, intron 1 of 2)	5136.0	NM_027309	70082.0	Mm.19119	NM_027309	ENSMUSG00000032184	Lysmd2	2210402C18Rik|AV033872|AW538442	LysM, putative peptidoglycan-binding, domain containing 2	protein-coding	4.93663048504851	4.98452517890934	5.22394919529476	4.85002059336761	5.61683014196866	5.49144950684923	5.64875834291851	5.53182321381027	1.06194199325539	0.000209368089088083	0.00378142887926938
Merged-chr6-65042713-4	chr6	65042591	65042791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355250)	promoter-TSS (NM_001355250)	100.0	NM_001355249	13990.0	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|etl-1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	6.77008238414374	6.8915389113051	7.35487796312976	6.8919101285763	6.90355644153185	6.96330439871247	6.91590152307563	6.98420712336873	-0.0699705365315764	0.741334970421626	0.898139463026673
Merged-chr2-27768557-5	chr2	27768466	27768666	+	945.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57983.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	4.25901205144513	4.45611280864203	4.17415298095061	3.72014828779928	4.09004732727316	4.3012368157274	3.74720841095268	3.81833928936474	-0.428977197252615	0.374306589152016	0.677726106767689
Merged-chr5-43872050-4	chr5	43871954	43872154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	ORR1B2|LTR|ERVL-MaLR	3245.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	6.31724882048249	6.11843633440884	6.16155954118649	5.75460980755252	6.70994487772905	6.64953793726688	6.64938876429896	6.21819515212569	0.733603449412076	0.00345250476787854	0.0356566797551982
Merged-chr2-60418295-4	chr2	60418197	60418397	+	925.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008867, exon 30 of 30)	3' UTR (NM_008867, exon 30 of 30)	6772.0	NR_046065	100039176.0	Mm.261790	NR_046065	ENSMUSG00000087283	Gm13580	-	predicted gene 13580	ncRNA	3.89792536862149	3.90329839218974	3.95422358265779	4.43533759454918	4.22486396546687	4.32880500479598	4.46311079271679	4.28703460089541	0.572356462868858	0.19827543162453	0.499789182930889
Merged-chr16-44199214-4	chr16	44199108	44199308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029889, intron 3 of 7)	intron (NM_001029889, intron 3 of 7)	25811.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	7.624249811171	7.23742614657737	7.60898152470084	7.5152857186047	7.20829664567025	7.20296566952041	7.31407350893533	7.54402781229355	-0.241948886422296	0.210319761897937	0.514798842232918
Merged-chr1-94681009-4	chr1	94680902	94681102	+	689.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-116440.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	4.03347676578679	3.97255129189971	4.22831651275526	4.55006971620336	4.10712782449377	4.30849793415657	4.11720843696136	4.50707641948597	0.0750403151975873	0.863956105949385	0.948894455369976
Merged-chr11-46833552-3	chr11	46833445	46833645	+	831.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 5 of 8)	MTC|LTR|ERVL-MaLR	22746.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	3.6218214803904	3.54740004018327	3.97160209064493	4.16750400701892	3.83450786732176	3.73944895159794	3.71724377399965	3.56192022990694	-0.427338950115152	0.396063623569642	0.695037416781232
Merged-chr6-85961244-4	chr6	85961154	85961354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028099, intron 1 of 8)	CpG	413.0	NM_028099	72102.0	Mm.24007	NM_028099	ENSMUSG00000030002	Dusp11	2010300F21Rik|AI481497	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	protein-coding	5.74700728957911	5.7625524024707	6.23698611146525	5.98416482887854	5.96609441477404	6.04693473992057	6.07678117823926	5.84353445605395	0.0580872189715123	0.819410380162642	0.930843810041761
Merged-chr17-24720781-4	chr17	24720695	24720895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027900)	promoter-TSS (NR_027900)	6.0	NR_002897	104366.0	Mm.157452	NR_002897	ENSMUSG00000077709	Snora64	MBI-29|Rnu64	small nucleolar RNA, H/ACA box 64	snoRNA	5.01514307273013	5.13602408397279	4.91811819173422	4.72898976484737	4.91169393579956	4.60953575904798	4.78907967262823	4.37540600111387	-0.517107309985697	0.15355641757862	0.438299020903824
Merged-chr6-123170390-4	chr6	123170296	123170496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-2627.0	NM_001004159	381809.0	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	6.45390509132846	6.24063291028213	6.40407809175402	6.25387563986695	6.30155658350891	6.74104442397901	6.30030880937024	6.21306363320104	0.0978477768656941	0.67676234393317	0.86728762362675
Merged-chr2-91052154-3	chr2	91052057	91052257	+	983.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-1859.0	NM_008948	19182.0	Mm.289832	NM_008948	ENSMUSG00000002102	Psmc3	TBP-1	proteasome (prosome, macropain) 26S subunit, ATPase 3	protein-coding	3.62936890819131	4.02894304220078	3.79184531345005	3.94878693236195	3.76548431302594	3.56077499067814	4.08552763725813	3.44370416588516	-0.359648649977376	0.474371442440602	0.75165589989079
Merged-chr15-30605899-3	chr15	30605812	30606012	+	761.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-433214.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	3.41834558897496	3.36565111544541	3.97861589819162	3.69149200830111	3.6302959996388	3.76991297927125	3.58295247391674	3.79983232385244	0.18156969533998	0.719749074309317	0.888022825078143
Merged-chr10-117709112-4	chr10	117709016	117709216	+	738.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001288586, intron 2 of 10)	intron (NM_001288586, intron 2 of 10)	1642.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	4.02035732538234	3.95995957688518	4.30284827077226	4.20908547623939	4.19162028106384	4.29559076625541	4.1514518675288	4.5302732566962	0.402738797474741	0.323209639559296	0.634693600413583
Merged-chr9-58248976-4	chr9	58248890	58249090	+	930.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008884, intron 1 of 7)	intron (NM_008884, intron 1 of 7)	796.0	NM_008884	18854.0	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	4.6352609229677	4.68399028540523	4.47445494067835	4.63109395468105	4.55430412661059	4.60477677447616	4.53687258738899	4.38270384826656	-0.197240708205903	0.576871942679505	0.81380149056573
Merged-chr7-127129844-4	chr7	127129743	127129943	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7814.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	4.00914663365346	3.66646935423754	4.00973399229443	4.16728504549941	4.33407847095431	3.86067188791169	3.9437831353762	4.2695404737527	0.366657722228749	0.422569416916177	0.714839748072846
Merged-chr11-111097306-2	chr11	111097206	111097406	+	902.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31142.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	2.99620322698255	2.90881879292652	2.92590997024233	2.93287467700119	3.28041631707215	3.41893562642196	3.48864240393654	3.45529438055456	1.80531138527803	0.00110187187936049	0.0145267898686795
Merged-chr14-25785369-1	chr14	25785269	25785469	+	619.0	f0_balb.idr	Intergenic	Intergenic	-16513.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	3.18695742304051	3.06760793128035	3.23945172991488	3.06635977118865	3.08488759142673	2.77655617539962	3.00636978858977	2.81972357153873	-0.856198709203484	0.163708924829972	0.453499458418378
Merged-chr9-53700970-2	chr9	53700870	53701070	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175562, intron 1 of 1)	intron (NM_175562, intron 1 of 1)	5262.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	5.02743241028775	5.13627100707887	5.49289667590509	5.49210247549426	5.3576577571575	5.24226035383817	5.30043734498569	5.40884034273844	0.0238029295634013	0.937156008679347	0.977223723991794
Merged-chr11-101959993-4	chr11	101959904	101960104	+	938.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045806, exon 4 of 4)	non-coding (NR_045806, exon 4 of 4)	7011.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	5.12203840208742	5.49968465187839	5.24850295241556	4.86319570044425	5.61713213263455	4.68931891229944	5.28022798278227	4.82444444989847	-0.050665666961606	0.894497918592101	0.960584583257403
Merged-chr9-66615283-3	chr9	66615185	66615385	+	693.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22170.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	3.80391823858341	3.83507071394512	3.43782231387715	3.55720379353014	3.40978579471043	3.61291583264682	3.59339469217552	3.49518347582123	-0.449821440998216	0.366688938349778	0.671068852337092
Merged-chr10-81291738-4	chr10	81291633	81291833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282095)	promoter-TSS (NM_001282095)	-152.0	NM_001282095	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	6.17557507726875	6.1646011857193	5.81616749736076	5.96771154697141	6.21340844056629	6.54968284279045	5.886178469246	6.33723104875772	0.349373711765093	0.172205792837567	0.465460474230468
Merged-chr13-69493213-4	chr13	69493117	69493317	+	853.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40647.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	4.80853840543428	5.07530362045957	4.77467410882291	4.73538964206584	4.33230119298872	4.63362365299719	4.43687685825467	4.09527805283216	-1.03938403167035	0.00610751019381086	0.05498690464018
Merged-chr5-148741853-3	chr5	148741722	148741922	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028285)	promoter-TSS (NR_028285)	-18.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	4.3564977848961	5.11076493687742	4.87183553432943	3.82235462615991	6.2600538777018	6.24252065209908	5.76894349486335	5.72991469068998	2.50568846962493	7.62062844888358e-10	5.01704096014974e-08
Merged-chr2-129298501-4	chr2	129298489	129298689	+	703.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040371, intron 1 of 4)	RMER15|LTR|ERVL	1219.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	3.61506511076855	4.15212552257893	3.56249480973947	2.57670547309188	3.49809780060388	3.62963611258697	3.10820213975549	3.44742903925652	-0.583253711288564	0.577878335898323	0.814381921099761
Merged-chr2-37452150-4	chr2	37452068	37452268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033960)	promoter-TSS (NM_001033960)	-86.0	NM_001033960	227800.0	Mm.383192	NM_146121	ENSMUSG00000035437	Rabgap1	Gapcena|mKIAA4104	RAB GTPase activating protein 1	protein-coding	8.2378358025548	8.2080408781824	8.13566346692575	8.32930196042962	8.32494691370662	8.17943356943942	8.57517948884804	8.21610792435596	0.128439424895385	0.439771070062542	0.727425871224001
Merged-chr17-36135944-4	chr17	36135844	36136044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6519.0	NM_001177467	630294.0	Mm.484916	NM_001177467	ENSMUSG00000092243	Gm7030	EG630294|H2-t9	predicted gene 7030	protein-coding	6.37259659698509	6.32569434276064	6.18649719616944	6.32776892643439	5.95990423041146	5.05777081846365	5.43599216649701	5.61177664217182	-1.16035477470056	9.89751541559503e-05	0.00201341883328562
Merged-chr2-165287787-4	chr2	165287666	165287866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252574)	promoter-TSS (NM_001252574)	21.0	NM_001252574	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	5.20111978699278	5.35871581963419	4.97425656041637	4.88466084665017	4.88368093458024	5.11325658457753	4.98519909920843	5.00602044820553	-0.220806265214816	0.495995564880422	0.766039627500674
Merged-chr11-87462920-2	chr11	87462820	87463020	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	35329.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	4.6817163313068	4.80080809251613	4.60598869687247	4.33743339315066	4.60083927036907	4.3736755770495	4.92415277066519	4.29303921128763	-0.0711070425323635	0.856445620917166	0.945966867639044
Merged-chr6-81957218-3	chr6	81957118	81957318	+	734.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026490)	TTS (NM_026490)	8731.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	3.46152962697358	3.31995917636497	3.65091728391609	3.9568353634486	2.76559558445492	3.08828063571459	2.81399461753874	2.89870566861627	-3.4287997637711	6.38439472261473e-06	0.000184579541820062
Merged-chr4-132345729-4	chr4	132345657	132345857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001197082)	promoter-TSS (NM_001197082)	-7.0	NM_133878	100088.0	Mm.255045	NM_133878	ENSMUSG00000028896	Rcc1	4931417M11Rik|AI326872|Chc1	regulator of chromosome condensation 1	protein-coding	5.52671860864961	5.86806583910742	5.6668341350935	5.31750547246933	5.93636955360565	6.01360238435907	5.63813843039924	6.12147995532251	0.559843361247333	0.0453151247007534	0.217938193315874
Merged-chr7-101374320-3	chr7	101374207	101374407	+	755.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 3 of 33)	intron (NM_001040111, intron 3 of 33)	-3815.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	3.47664598735817	3.85612209798534	3.14553058984767	3.15839577289354	3.88984004483452	3.59461461506362	3.67767622945006	3.74026614020948	0.918239845428022	0.0961524882790807	0.339783667599249
Merged-chr11-115160198-3	chr11	115160113	115160313	+	900.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021411, intron 6 of 8)	intron (NM_021411, intron 6 of 8)	-3128.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	3.41024567175073	3.45999803406671	3.5893861082308	3.70478699072968	3.59504996506424	3.9630435431087	3.46042790932788	3.9693342300613	0.626898937826799	0.216842285776612	0.523576380620064
Merged-chr8-34908738-3	chr8	34908682	34908882	+	924.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 3 of 26)	intron (NM_175091, intron 3 of 26)	56908.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	3.35597234550187	3.2916173802689	3.51889856988767	3.73924346665697	3.18054251547488	3.40976170607837	3.28574675773566	3.41104374242732	-0.633914170066657	0.242559344261585	0.553291388378231
Merged-chr14-31390009-4	chr14	31389926	31390126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	27651.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	8.60150593460607	8.69715230174029	8.88864316561377	8.62120088579154	8.55697118412806	8.86173334424446	8.87799957928335	8.57392444842677	0.0235837143727851	0.886162351168045	0.957247996194402
Merged-chr2-102897607-1	chr2	102897507	102897707	+	625.5	f0_balb.idr	intron (NM_001039150, intron 1 of 13)	Lx5|LINE|L1	4058.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.52165489761741	3.3928848648272	3.41201843774957	3.41942287539994	3.56483652022353	3.52565518989053	3.60786880301316	3.35175756302274	0.279168143280019	0.571132559018891	0.810378638859875
Merged-chr2-90477762-2	chr2	90477662	90477862	+	688.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	1412.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	2.73228311948339	2.63861579655694	2.73263640988392	2.30706704613696	2.57706337856177	2.77648661048227	2.65840676176807	2.96241782110205	0.698566484709267	0.317195160884277	0.629008590755612
Merged-chr4-45531238-4	chr4	45531138	45531338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033306)	promoter-TSS (NM_001033306)	-410.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	6.6812021330929	6.50662406917155	6.61892795274907	6.82686025862102	6.95690321827333	6.96272700850442	6.98403786146589	6.99068291286071	0.418106606518968	0.036196340421675	0.18911900236169
Merged-chr7-108934320-4	chr7	108934225	108934425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025344)	promoter-TSS (NM_025344)	-90.0	NM_025344	66085.0	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	8.5788016309163	9.02085718532317	8.64971317740817	8.74160645857635	8.85863260584353	9.09854453653967	8.76323997866518	8.53122590328661	0.0851226760803992	0.642553141360385	0.849280263845856
Merged-chr13-45392674-3	chr13	45392592	45392792	+	910.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153789, intron 2 of 6)	RSINE1|SINE|B4	2950.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	3.27279213339456	3.60992753430303	3.85763822282169	3.39774253376145	3.22554309180518	3.38754367345377	2.99316605947246	3.20854373827336	-1.22242365418664	0.035680297064937	0.187570565481808
Merged-chr16-21716786-4	chr16	21716689	21716889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-22124.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	5.53254435495563	6.01554946768902	5.6812522893605	5.29271668243413	5.26177506901482	4.76401576560535	5.45237049688005	5.13486310750745	-0.830154301161441	0.0145765944816344	0.102760793497961
Merged-chr13-37218777-4	chr13	37218677	37218877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126568.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	7.23425736144851	7.56714155714809	7.15855254165294	7.43881078408717	7.12626900488125	6.98584524676832	6.72749371036029	6.84695371252556	-0.586198425921928	0.00445743734459529	0.0436238048605731
Merged-chr5-66041495-4	chr5	66041401	66041601	+	957.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 3 of 6)	Lx9|LINE|L1	-37216.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	4.96195035743214	5.8086752933188	5.73673674836704	4.61374070237268	5.09472453661922	5.54034949583656	5.54812857744397	4.79256479528874	-0.171892194046421	0.683241689795668	0.870301722225588
Merged-chr19-17256555-3	chr19	17256453	17256653	+	581.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	82952.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	3.36506636289351	3.51699254707372	3.46572730849858	3.19669258820233	2.78643270573517	3.11922774646446	3.12687727758554	2.93659537836742	-1.63284002732001	0.00817629804738045	0.0681635885118872
Merged-chr6-52211746-4	chr6	52211645	52211845	+	812.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015611, intron 1 of 2)	CpG	1322.0	NM_010452	15400.0	Mm.71533	NM_010452	ENSMUSG00000079560	Hoxa3	Hox-1.5|Mo-10	homeobox A3	protein-coding	3.49438674032103	3.78670443402041	3.7949061387044	3.61953300225603	3.75961052845443	4.2521040653438	4.26066325647509	3.94473473984257	1.08694874719119	0.0193828399064595	0.125300605752648
Merged-chr11-96944050-4	chr11	96943955	96944155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003293)	promoter-TSS (NR_003293)	-36.0	NM_134021	103711.0	Mm.254704	NM_134021	ENSMUSG00000018659	Pnpo	AI415282	pyridoxine 5'-phosphate oxidase	protein-coding	7.43922920407928	7.90908311721803	7.41056445209428	7.55212221331298	7.86501108322923	7.76688623441691	7.55256568529902	7.58457629305089	0.139942881062786	0.475472073117976	0.75229792367716
Merged-chr19-34753458-3	chr19	34753351	34753551	+	725.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6340.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	3.81707204325374	4.24967157951353	4.2748829705084	4.02687460349328	3.85726392788741	3.82241137893322	4.0031820913012	3.7595160908342	-0.656435752437713	0.141902604187258	0.419107280640866
Merged-chr1-36591586-4	chr1	36591489	36591689	+	853.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 10 of 14)	intron (NM_001126046, intron 10 of 14)	1743.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	3.48068523515399	3.68935483215059	3.41945859925973	3.56575432432033	3.78406243793207	3.71338802834002	3.87328853245024	3.70022916923692	0.686448455810966	0.143310178621913	0.421515504302858
Merged-chr6-126940682-4	chr6	126940581	126940781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138594, intron 1 of 13)	Lx8|LINE|L1	715.0	NM_138594	28040.0	Mm.44228	NM_138594	ENSMUSG00000030347	D6Wsu163e	C12orf4	DNA segment, Chr 6, Wayne State University 163, expressed	protein-coding	7.92106398185931	8.09685618817468	8.14173786740191	8.26776031709906	8.00908547795947	8.02510892933751	8.00180206792653	7.96690053366734	-0.153789916312842	0.344694251043036	0.653182920489211
Merged-chr2-131939656-2	chr2	131939556	131939756	+	783.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001278259, intron 2 of 4)	intron (NM_001278259, intron 2 of 4)	-11205.0	NM_001278257	26434.0	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion like protein doppel	protein-coding	3.23290858483525	3.33981873055175	2.98554253807119	2.86189171037977	3.11406780600558	3.34700417870264	3.27501866632698	3.11367582246893	0.394025581134665	0.498700977431496	0.767785713074999
Merged-chr3-84815469-8	chr3	84815282	84815482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177773)	promoter-TSS (NM_001177773)	-195.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	5.01572530470908	4.48093494889254	5.01657372285872	4.78310742158131	4.96970942112763	4.97699277207054	5.02434177583116	5.19688899067016	0.416950009976664	0.212291187915239	0.517205451280765
Merged-chr1-79760254-4	chr1	79760128	79760328	+	931.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027057, intron 1 of 4)	intron (NM_027057, intron 1 of 4)	1541.0	NM_001111279	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	4.41898189378376	4.75575685001093	4.27814376958211	4.87883262739189	4.67592388247595	4.2465715057986	4.77946664632772	4.32443299853112	-0.194776345907931	0.634896315355604	0.845499285207272
Merged-chr16-90349857-4	chr16	90349761	90349961	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-36536.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	5.81009455124425	5.79837292145878	5.36109313295239	5.2153999224095	5.84109329357613	5.89225374828156	5.51078356318828	5.2586013287107	0.156615223148755	0.623070017859635	0.838884054759699
Merged-chr3-41565617-4	chr3	41565516	41565716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130186, intron 1 of 10)	CpG	736.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	6.56513950278453	6.68162326759818	6.56629935312593	7.10303684494124	6.34495740285531	6.37226652773587	6.76670215258659	6.38883436833629	-0.417837635878134	0.0874233897248001	0.322500722661806
Merged-chr13-42244680-4	chr13	42244635	42244835	+	970.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56741.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	5.13871877013017	4.9343041453859	4.93682976992754	5.21571660950645	4.82556676351906	5.1473102596919	4.87648247560426	5.31046113204246	-0.049457207137036	0.880099855374434	0.955083490960425
Merged-chr12-91581898-4	chr12	91581799	91581999	+	958.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175335, intron 2 of 8)	intron (NM_175335, intron 2 of 8)	7750.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	4.67416264380924	4.83441749047075	5.0656377720334	4.97199638981556	5.09505378895724	4.3662696112758	5.00991130103191	4.75233067313175	-0.100463857239782	0.784426049823668	0.916076100794651
Merged-chr12-17712101-4	chr12	17712002	17712202	+	880.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	21293.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	4.43246107203831	4.59395544807897	4.57054546737882	4.38828937437304	4.8929302102606	4.74807608297501	5.25698719490015	5.00531171850819	1.03785935198889	0.00253231278029336	0.0280358472435666
Merged-chr5-109866622-4	chr5	109866514	109866714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32472.0	NR_027964	667213.0	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213	zinc finger protein pseudogene	pseudo	8.03164156454965	7.95442152639644	8.3588981088992	8.04482492853592	7.84748501408092	7.90312877000882	8.26221066241037	8.00749970358984	-0.116887568054335	0.523705383184958	0.782614071626827
Merged-chr12-80065258-4	chr12	80065156	80065356	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47757.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	5.50186899916071	5.42567159538456	4.87887043508819	5.29342563781461	5.43235200421336	5.51023908911078	5.33907820963959	5.24082199429369	0.156488427596748	0.606164794038172	0.829351704182035
Merged-chr10-30676581-4	chr10	30676485	30676685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 9 of 14)	intron (NM_001358842, intron 9 of 14)	-20718.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	7.47552676051697	7.16140390468419	8.10789900251403	7.96635821457532	7.44318552804041	7.51170719425998	7.81183617190946	7.53746728108192	-0.201994867003835	0.402024731501536	0.699599500367891
Merged-chr14-103059815-4	chr14	103059693	103059893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9E|LTR|ERVK	-10423.0	NM_001033242	211286.0	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	6.35280763293732	6.89382872103547	6.20381874923964	5.70973628849399	6.41727808801375	6.45733227810291	6.11103966251518	6.00621178082129	-0.136636638277086	0.661389586529077	0.859384613734741
Merged-chr15-25859649-4	chr15	25859534	25859734	+	930.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 1 of 8)	MLT1A1|LTR|ERVL-MaLR	16336.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	4.30248738693578	4.31464978055822	4.54532170180689	4.47480265497193	4.39976066004961	4.18274275516707	4.41017639232801	4.15998867880706	-0.280108154897423	0.467564777254838	0.747026558181345
Merged-chr10-81401364-4	chr10	81401216	81401416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 8 of 8)	intron (NM_026756, intron 8 of 8)	8252.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	5.57008636079324	6.08423578778967	5.48580853517608	5.78035510461837	5.60152130875927	5.6910399072772	5.39876472711819	5.67247605381932	-0.274217114627008	0.333061710132464	0.643949462597274
Merged-chr2-147023808-4	chr2	147023715	147023915	+	926.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356402, intron 1 of 28)	intron (NM_001356402, intron 1 of 28)	10816.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	5.01435496217991	4.29820972270626	4.95160917140727	5.56732523861572	4.49126728512972	4.61858380974182	4.63761348820269	4.38469417157215	-1.06417015324839	0.0131278926127199	0.0956330230560626
Merged-chr10-96338792-4	chr10	96338684	96338884	+	986.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112577.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	5.47723494994923	4.98625605504247	5.45244256964275	5.20914261693903	5.12946580698668	5.16302969839205	4.92386400210675	5.42231653574704	-0.215550420395146	0.498206773398716	0.767539498804104
Merged-chr17-35186851-3	chr17	35186739	35186939	+	628.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_010734, intron 2 of 3)	intron (NM_010734, intron 2 of 3)	1601.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	3.6525134486012	3.6167306858849	3.33672203602161	2.82789377058314	3.57945859213472	3.56897924683194	3.20067326062206	3.21019619571237	0.00863080269493008	0.988951243115303	0.995581083851272
Merged-chr13-38503691-3	chr13	38503617	38503817	+	922.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289599, intron 8 of 9)	intron (NM_001289599, intron 8 of 9)	24197.0	NM_001289599	105245.0	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding	3.58807572834792	3.30772110967509	3.21585835079122	3.89570585414579	2.85885748108632	3.05386810627735	3.26378227534916	3.15119729660102	-1.74102540198818	0.00572050864110064	0.0524851874922535
Merged-chr7-141123158-4	chr7	141123059	141123259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5353.0	NM_178381	71345.0	Mm.235813	NM_178381	ENSMUSG00000054662	Ano9	5430425C04Rik|Tmem16j|Tp53i5|Trp53i5	anoctamin 9	protein-coding	8.11692616477331	7.91787907115104	7.90361093131183	7.91287367753686	7.88857250843851	7.63401912496	7.87956520733987	7.31160620125636	-0.336321190124079	0.0813349717365115	0.309417833291006
Merged-chr9-102913780-4	chr9	102913682	102913882	+	976.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	78862.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	4.51593209608627	4.7206751909129	4.7661003333357	4.94301219277739	4.96642239407395	4.69428519472121	4.9503811343853	4.80017045697178	0.206848122043984	0.547626832758258	0.796931843492395
Merged-chr8-108809037-2	chr8	108808933	108809133	+	733.333374	f0_balb.idr|f0_c57.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	94389.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	3.95402604734681	3.61832967735603	4.1638437468261	3.99378145916603	3.85907844095161	3.28279919994526	3.68937016152638	3.90586921193012	-0.681110893562908	0.194821146700688	0.495486275806921
Merged-chr7-55918496-4	chr7	55918417	55918617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 23 of 30)	intron (NM_011370, intron 23 of 30)	43976.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	7.1363331223872	7.15050048134457	6.99632247232587	7.27901292402347	7.67105205097789	7.70771292894907	7.75589588308583	7.52549283633606	0.683772742085038	0.000144736010026041	0.00277163423665417
Merged-chr1-131068376-4	chr1	131068273	131068473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	MTC|LTR|ERVL-MaLR	29470.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	6.73806732635735	6.92064358581627	6.66575521017067	6.64095730179399	6.60118877083488	6.71511269397736	6.45401465881937	6.58298525685728	-0.21756447795553	0.295745885145653	0.60765742950211
Merged-chr14-104522671-4	chr14	104522557	104522757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026047)	promoter-TSS (NM_026047)	9.0	NM_026047	72486.0	Mm.291811	NM_026047	ENSMUSG00000022120	Rnf219	2610206B13Rik|2810449K13Rik|AI451544	ring finger protein 219	protein-coding	5.95801810168235	6.15038400296253	6.52097912652479	6.25250254600039	6.42532721647184	6.47518349475375	6.60615732752364	6.1777205967452	0.289393558351178	0.229977268143776	0.539110524608281
Merged-chr10-80931927-4	chr10	80931827	80932027	+	873.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008655, exon 4 of 4)	3' UTR (NM_008655, exon 4 of 4)	1836.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	3.94983752663686	4.0442093989268	4.34379000075818	3.53810023192389	4.2337500065841	3.96649914439552	4.07719108665082	3.99818644088991	0.23608595802975	0.618123146271529	0.835863676650469
Merged-chr4-134396251-4	chr4	134396151	134396351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285875)	promoter-TSS (NM_001285875)	-69.0	NM_133880	100163.0	Mm.22116	NM_133880	ENSMUSG00000037366	Pafah2	2310074E22Rik|AI507170	platelet-activating factor acetylhydrolase 2	protein-coding	7.95250396274981	8.2182201616736	7.6670299363682	7.79652488317104	7.89651921217249	8.02286951018591	8.03414069341861	7.72958424969783	0.00146166286273771	0.993854289038918	0.997702270136287
Merged-chr2-153350922-6	chr2	153350794	153350994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039939, intron 1 of 11)	intron (NM_001039939, intron 1 of 11)	4755.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	5.93961890863505	5.7887750983528	5.81003147813683	5.6742418839074	5.67411376852832	5.55471415387674	5.38139496302719	5.71064014212867	-0.342592662056084	0.195556339378975	0.496384524956887
Merged-chr9-101037533-3	chr9	101037279	101037479	+	677.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2495.0	NM_025835	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	2.23651527891467	2.35287328075759	2.29836512125493	1.92227524805019	1.9877436735683	1.89060248633856	1.95219160610663	2.03166598882881	-1.80483245723123	0.0488194426967066	0.22838771683923
Merged-chr1-182283455-4	chr1	182283368	182283568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007853)	promoter-TSS (NM_007853)	-667.0	NM_007853	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	6.59229134274666	6.63183767233118	6.7172074040014	6.67485506751711	6.85389221227068	6.90764891747697	6.62295196683486	6.86483445257827	0.229771400857693	0.249760198692358	0.56079709388545
Merged-chr9-66833440-4	chr9	66833330	66833530	+	900.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026674, intron 1 of 5)	intron (NM_026674, intron 1 of 5)	1276.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	4.08134901720697	4.13674078747493	4.03613233830824	4.36636125170013	4.07061236396563	3.77805639522712	3.64714567077855	3.88566881242085	-0.835397752884254	0.0663906051890286	0.274665323263578
Merged-chr4-84077523-3	chr4	84077450	84077650	+	800.638855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32671.0	NR_130998	78238.0	Mm.243903	NR_130998	ENSMUSG00000085217	6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA	3.30144583786974	3.47764148171386	3.88150730932299	3.75621704084106	2.64991713357469	2.78269346496848	2.74814290098871	2.75381285044931	-5.76951371890819	1.62531815593052e-07	6.67562152458039e-06
Merged-chr15-38620391-3	chr15	38620292	38620492	+	937.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR53_Mm|LTR|ERVK	-25458.0	NR_045757	69679.0	Mm.416890	NR_045757	ENSMUSG00000102106	2310043O21Rik	-	RIKEN cDNA 2310043O21 gene	ncRNA	3.48825782947363	3.62693688182123	3.71764444239634	3.98990650209114	3.89162347996231	3.66547646395238	3.70283868996875	3.90960334048733	0.186381083933483	0.703072258174769	0.880559900489546
Merged-chr8-4516367-4	chr8	4516293	4516493	+	877.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026058, intron 2 of 10)	intron (NM_026058, intron 2 of 10)	22988.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	4.30995825025173	3.84682211929824	3.9478810281132	4.1194615795276	4.29397399453396	3.9597778400666	4.16770446656705	4.09379399850296	0.188290460800744	0.658703974852807	0.857995155933081
Merged-chr11-80067781-4	chr11	80067683	80067883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018776, intron 1 of 7)	intron (NM_018776, intron 1 of 7)	13208.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	6.78667545492736	6.62276914447317	6.87739743535157	6.49268760311604	6.29447295254884	6.32215343817109	6.29588685578977	6.43353244540735	-0.518911967916736	0.0187752375751436	0.122698095305721
Merged-chr15-86202863-4	chr15	86202763	86202963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11596.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	7.56751493424058	7.30294720110367	7.83791320326151	7.90052178006388	6.98457036233151	7.2726619520668	7.00785364803496	7.17424948992763	-0.763676157710796	0.000268946937034551	0.004638568943829
Merged-chr14-17633056-4	chr14	17632948	17633148	+	853.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27912.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	4.32417803865467	4.41341178419001	4.14521462583271	4.62764244741955	4.27866191920252	3.94006120161726	4.12767189243541	4.09371851731801	-0.693163367714037	0.0977814571245356	0.342585678539137
Merged-chr12-54695794-4	chr12	54695678	54695878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001331162, exon 1 of 5)	exon (NM_001331162, exon 1 of 5)	116.0	NM_001331162	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	7.16576100232944	7.40572649913956	7.30922810693081	7.1958768844602	7.35493963403887	7.3554685574188	7.22016675208813	7.31444169409506	0.0591690105577859	0.741407542386737	0.898179889473609
Merged-chr2-118591189-3	chr2	118591076	118591276	+	895.9722289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7035.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	3.52628795836276	4.37627746025517	3.7246463637884	3.46876746243626	4.33846195711162	4.52094556228033	4.12563846310985	4.09638784588476	1.1676878749966	0.0227967221216104	0.139482718089567
Merged-chr16-91433698-4	chr16	91433610	91433810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27475.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	6.29212848074751	6.17606242289217	6.10807475631431	5.64970545950238	5.78543984379954	6.01933528096172	6.0157639074601	6.02127727605944	-0.161312754889668	0.551140011150297	0.798837168776829
Merged-chr1-172309861-4	chr1	172309762	172309962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2505.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	5.25922931645095	5.30164040513145	5.09442987622411	5.14925206256919	5.64960647190606	5.30543044316902	5.13815612849849	5.45701555416659	0.383812945150446	0.197678505667596	0.499044730396766
Merged-chr7-114479983-4	chr7	114479887	114480087	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 1 of 15)	intron (NM_011055, intron 1 of 15)	64733.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	5.46200469470472	5.36955662667015	5.56556784607001	6.02442653690647	5.09309213259041	5.1233120962979	4.74970149717704	4.97823950946759	-1.18764300061289	0.000321375043867332	0.00536345937806163
Merged-chr5-99221045-4	chr5	99220916	99221116	+	907.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 13 of 13)	RMER19C|LTR|ERVK	31911.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.52328799565756	4.78759201018384	4.39497534387464	4.1106527177404	4.54404139402806	4.88353278983554	4.54285942766167	4.24927233134621	0.232388357558607	0.571311607700405	0.810535746238008
Merged-chr4-150110533-4	chr4	150110436	150110636	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-8808.0	NM_019741	56485.0	Mm.260220	NM_019741	ENSMUSG00000028976	Slc2a5	AI526984|Glut5|Slc5a	solute carrier family 2 (facilitated glucose transporter), member 5	protein-coding	5.03881397351557	5.20261724550494	5.03965348551774	5.20252672700656	6.19164688451288	6.22171318639079	5.97899558193984	5.96654624992283	1.60086636668701	2.70606680966984e-09	1.60378958738959e-07
Merged-chr16-32401715-4	chr16	32401582	32401782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160402, intron 1 of 4)	intron (NM_001160402, intron 1 of 4)	1176.0	NM_001160402	277203.0	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	6.25298731980053	6.18672289632861	6.39701071622377	6.41921521825479	6.17662577938031	6.11066901650583	6.29521338856782	6.1307341542612	-0.217042694559812	0.334520301692718	0.645068635248264
Merged-chr2-27721260-4	chr2	27721180	27721380	+	899.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	10697.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	4.13704512808194	4.48354276190993	4.44790341858993	4.25740443614168	4.35872611159616	4.40714134200525	4.12041748350787	4.27725637402727	-0.0923717984388819	0.813407648318195	0.927857767644014
Merged-chr14-55101895-4	chr14	55101786	55101986	+	758.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007455, intron 14 of 21)	intron (NM_007455, intron 14 of 21)	4707.0	NM_001303502	11766.0	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	3.70585753223358	3.57145026712065	3.81349096852238	3.74212438996851	3.60984111540385	3.70884920701494	4.14996451400425	4.20541381314867	0.653341944231456	0.174466566621613	0.468918013274924
Merged-chr8-95141875-4	chr8	95141775	95141975	+	982.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010631, intron 1 of 19)	intron (NM_010631, intron 1 of 19)	665.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	4.59617254228671	4.50179847764613	4.93884732535095	4.65390679709625	4.44915639950434	4.36496153410346	4.31767657469761	4.6700912980637	-0.492187175679811	0.185947089905409	0.483870824275444
Merged-chr9-121297841-8	chr9	121297719	121297919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152160, exon 1 of 18)	non-coding (NR_152160, exon 1 of 18)	317.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	5.51742931873444	5.35987101405177	5.27477725283685	5.09461367827151	5.55555257316152	5.91925356053212	5.62118478544266	5.97356951731117	0.802509023316624	0.0050945474648267	0.0481573431605444
Merged-chr11-103249063-3	chr11	103248977	103249177	+	817.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	18324.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	3.32004074938683	3.35004880534348	3.67229046854395	3.37453463444286	3.37130714610016	3.10275139797195	3.41755015433126	3.19768759541132	-0.535089698800844	0.327497103706338	0.639005382256399
Merged-chr3-21963210-3	chr3	21963122	21963322	+	930.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113430.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.52989104298154	3.35008771501139	3.62823113368791	3.61494859104031	3.25980256595784	3.22411050541661	3.46448973756717	3.2453638893464	-0.836977129076828	0.112754854778159	0.371288758709039
Merged-chr14-50819888-3	chr14	50819804	50820004	+	993.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009632, intron 12 of 15)	intron (NM_009632, intron 12 of 15)	11988.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	3.55680741170027	3.1551000077247	3.33452796891594	2.93020629959125	4.70620738856993	4.30340689733228	4.27373169302263	4.92126073024466	4.09867101909826	7.42742396231865e-15	1.17745347486387e-12
Merged-chr3-52102114-4	chr3	52102002	52102202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	2904.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	8.82976780292326	8.72490836401698	9.03730252554087	8.76965939157333	8.62797935950197	8.81344418638381	8.83381710088771	8.77748375896276	-0.0998435485222037	0.514864054321002	0.777296530332344
Merged-chr9-57910997-4	chr9	57910932	57911132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122873)	promoter-TSS (NM_001122873)	46.0	NM_001122873	69459.0	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	6.05117548524138	5.96918221589754	5.94131791740941	6.07447637032143	6.0068248881674	6.07085195121459	6.38524557272517	6.13007383722051	0.21188629495685	0.372887307814141	0.676584814369541
Merged-chr17-34032307-4	chr17	34032210	34032410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205216)	promoter-TSS (NM_001205216)	-40.0	NM_001205216	20182.0	Mm.1243	NM_011306	ENSMUSG00000039656	Rxrb	AL023085|H-2RIIBP|Nr2b2|RCoR-1|Rub	retinoid X receptor beta	protein-coding	5.79293984242394	5.40747343389796	5.35907003156907	5.58258632545264	5.93375674559335	5.79659312453975	5.87372360881266	5.47863563346255	0.401528239756674	0.147567175198964	0.428716275787413
Merged-chr3-127331734-2	chr3	127331637	127331837	+	878.75	f0_c57.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	MTC|LTR|ERVL-MaLR	77321.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.18063654888319	2.86853145700732	3.1062941425011	2.62030320021901	3.90336692199217	3.63163396213241	4.18588350570252	4.06299182821843	3.99415057454455	1.1914834617886e-10	9.01260375416057e-09
Merged-chr2-60805551-3	chr2	60805467	60805667	+	745.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	75871.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	3.7986555473655	3.68860595566449	3.79922650614707	3.79504683189189	3.60103747283307	3.71257031373275	3.34408526624785	3.4789799896935	-0.725020872293444	0.136254304326715	0.410690032931242
Merged-chr6-38992141-4	chr6	38992053	38992253	+	857.6375119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 4 of 12)	L1ME3|LINE|L1	73167.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	4.47493565297918	4.24726292818933	4.17622382354657	4.13023329226391	4.28488063499579	4.48378059244241	4.15857155525403	4.39448504296351	0.193216984459885	0.62232060433371	0.83831156940409
Merged-chr11-68707221-4	chr11	68707093	68707293	+	891.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175260, intron 2 of 40)	Charlie1a|DNA|hAT-Charlie	15278.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	4.26269297780684	4.36493501539005	4.30599935813985	4.24834682341977	4.21768697496359	4.14934033876195	4.24430841538846	3.91507706827444	-0.380845837060012	0.341314098477815	0.650417547000225
Merged-chr9-25486464-4	chr9	25486364	25486564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	4867.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	7.39009537378622	7.4801440805116	7.60256092448551	7.94536127598625	7.37484482332594	7.25266567193899	7.5651805710124	6.9621078665278	-0.431162752038307	0.0491015702224623	0.229075222315307
Merged-chr5-113954604-4	chr5	113954491	113954691	+	818.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198109, intron 10 of 14)	intron (NM_198109, intron 10 of 14)	39166.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	3.74165470260575	3.9822847836303	3.25357151168452	3.61451640053254	3.74627082501082	3.63672613840946	3.91379154968394	3.79001276862704	0.300891293363682	0.555563594769211	0.801586928313244
Merged-chr9-90269538-2	chr9	90269452	90269652	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	1217.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	4.67779565277446	4.55291190200622	5.15953077026841	4.86178185138336	4.67648040714787	4.77096143678799	4.95091567851483	5.18409277145923	0.147777311067119	0.680992482304084	0.869036611076104
Merged-chr4-134543439-4	chr4	134543344	134543544	+	942.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029100, intron 6 of 11)	intron (NM_029100, intron 6 of 11)	-8057.0	NM_029759	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	5.1771538403741	4.49512490378984	4.41815621370686	4.93360796931728	5.01289837275545	5.22932886979155	5.0637735043514	4.77388858182037	0.45340572939779	0.224041829962778	0.532128184797041
Merged-chr3-122629744-4	chr3	122629593	122629793	+	812.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9979.0	NM_001114665	214459.0	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	3.92618322998711	3.19146073428386	3.27990724622104	3.61150962386095	3.95234147076844	4.00331765261756	3.99780276962908	4.13763114031539	1.40894490615081	0.00839011870534456	0.069409607081325
Merged-chr8-36159168-6	chr8	36159095	36159295	+	907.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151736, intron 2 of 3)	intron (NR_151736, intron 2 of 3)	3185.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	3.8609350325942	4.1468695728297	4.14510090795975	3.97507476200747	3.76263920045808	4.08602393589448	3.61851705416137	4.09941886801729	-0.366501743739586	0.420471319322963	0.713274332060183
Merged-chr3-96601037-4	chr3	96600950	96601150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163170)	promoter-TSS (NM_001163170)	-83.0	NM_001163170	280411.0	Mm.482147	NM_001163170	ENSMUSG00000049288	Lix1l	D130027M04Rik	Lix1-like	protein-coding	7.04191503134059	6.96750675359786	6.64737487473649	6.84092993326841	6.58751452525205	6.84057143397491	7.03070179448447	6.8893079049158	-0.059731474534622	0.779595042061439	0.914060675675219
Merged-chr13-64154846-4	chr13	64154724	64154924	+	707.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1625.0	NM_175494	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	3.71998681388381	3.67329229587268	3.61063520049384	3.78759642855809	3.77358146071919	3.60622385597123	3.94203722982141	3.9130752947713	0.322045178630903	0.482823978079539	0.757421686487144
Merged-chr16-32060041-4	chr16	32059941	32060141	+	938.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177326, intron 1 of 14)	intron (NM_177326, intron 1 of 14)	19301.0	NM_177326	224105.0	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 (RAC1) activated kinase 2	protein-coding	5.02199812992027	4.50963531503397	4.50072639619831	4.95830325461085	4.93794623073901	4.5855954778134	4.80162034296805	4.82146152897166	0.0387031362145498	0.915456988928002	0.968682181942473
Merged-chr2-59187564-4	chr2	59187465	59187665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	MIRb|SINE|MIR	26715.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	5.68055736979944	5.3259322001787	5.29251917760908	5.28228078939287	5.34028950329021	5.40519822132718	4.7986008400185	5.25810740434458	-0.315170930892634	0.320992370103719	0.632737838956237
Merged-chr6-52191994-4	chr6	52191941	52192141	+	962.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008265)	promoter-TSS (NM_008265)	-338.0	NM_008265	15401.0	Mm.439647	NM_008265	ENSMUSG00000000942	Hoxa4	AV206827|Hox-1.4	homeobox A4	protein-coding	4.34265249975905	4.64752025468119	4.47648634403216	4.52716382785677	4.4985551763947	5.00810574643597	4.36964186109651	4.08407501864149	0.0577808609749339	0.888891851835585	0.958394250474403
Merged-chr9-124020067-4	chr9	124019977	124020177	+	994.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-1894.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	5.83140542931793	5.49140546564238	6.05589093213692	5.94026782533284	5.1732445325336	5.35913201113888	5.4761128921093	5.7597140286219	-0.668577977433067	0.0243173531080988	0.145743526681678
Merged-chr10-13028412-3	chr10	13028321	13028521	+	789.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19971.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	3.97154021489291	4.10103470882204	4.02206093200649	4.7481342600192	3.720576083063	3.9886059713544	3.79519627521864	4.06767273873929	-0.994649737631366	0.0409238120738771	0.204544345172846
Merged-chr2-164860312-1	chr2	164860212	164860412	+	621.5	f0_balb.idr	Intergenic	Lx5c|LINE|L1	-2604.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	3.70195527440549	3.94128551322352	3.80748987796233	3.48803245175173	4.14882490196595	3.70466714808738	3.74099928099307	3.90232630709271	0.478468474037952	0.319078515962979	0.630946296506678
Merged-chr3-103791359-4	chr3	103791260	103791460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301306)	promoter-TSS (NM_001301306)	-85.0	NM_010432	15257.0	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	7.47579420478325	7.52128800160691	7.24529381392394	7.50783877427007	7.38338410705662	7.5584825380039	7.16418914091265	7.11224475232851	-0.173491824844596	0.36998993750796	0.674180522793413
Merged-chr8-71611011-4	chr8	71610916	71611116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146211)	promoter-TSS (NM_146211)	-8.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	9.21768395896358	9.31687045516045	9.28647568469407	8.93623268217901	8.95021635528208	9.26718475389916	9.03894973372577	8.91177624975965	-0.180971065969865	0.27224343615466	0.583764802661998
Merged-chr18-39370872-4	chr18	39370765	39370965	+	901.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 21 of 21)	Charlie4z|DNA|hAT-Charlie	116380.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.63918394481933	4.61713685565716	4.48710423068834	4.50527566893928	4.34265510551254	4.4418663011659	4.50599672648398	3.99804197709362	-0.521423199205962	0.175938084833387	0.470810817713283
Merged-chr11-79339552-4	chr11	79339462	79339662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010897)	promoter-TSS (NM_010897)	-330.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	6.39910519570549	6.48950103993672	5.89384341039814	5.98847750878436	6.66364432773002	6.75328075705602	6.0546706994719	6.57362848340096	0.486071409277901	0.0719458871413005	0.288184372584729
Merged-chr12-105733533-4	chr12	105733447	105733647	+	973.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030187, intron 6 of 17)	intron (NM_030187, intron 6 of 17)	27565.0	NM_030187	78801.0	Mm.36006	NM_030187	ENSMUSG00000041323	Ak7	4930502N02Rik|AK 7	adenylate kinase 7	protein-coding	5.09977286755414	4.84065543067122	4.74402145645202	4.90846847941815	5.02009991525129	4.8785963936333	5.07564319597758	5.21490244745255	0.293731182790181	0.356192896430225	0.662704502355483
Merged-chr17-25732255-3	chr17	25732152	25732352	+	779.938904	f0_balb.idr|f0_c57.idr|f1_balb.idr	TTS (NM_001357176)	TTS (NM_001357176)	-3788.0	NM_177822	328783.0	Mm.183275	NM_177822	ENSMUSG00000041062	Mslnl	4732467B22	mesothelin-like	protein-coding	4.41060520024127	4.2246344610378	4.12857305121345	4.0359412413255	4.49970269125335	4.7027235769989	4.62034386492089	4.45007951216711	0.882645650304515	0.0193899976793636	0.125309664501491
Merged-chr18-34862256-2	chr18	34862156	34862356	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007913, intron 1 of 1)	intron (NM_007913, intron 1 of 1)	1049.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	7.37675720148523	8.17843777025302	6.06701432538176	4.64244783595756	7.7779787069124	8.36020623171037	6.5073498315765	6.55502782623784	0.484047707315773	0.635637124014028	0.845840621615152
Merged-chr11-61684323-4	chr11	61684211	61684411	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178618)	promoter-TSS (NM_178618)	-99.0	NM_178618	69640.0	Mm.458559	NM_178618	ENSMUSG00000042377	Fam83g	2310040C09Rik|AI506990|wly	family with sequence similarity 83, member G	protein-coding	4.91477975205457	4.96172638996415	4.98511479580042	4.63656872839242	4.93827472854359	5.08900678966899	4.89202028919516	5.07921176274153	0.268369084115488	0.409268175711098	0.704924233683108
Merged-chr5-137062021-3	chr5	137061920	137062120	+	770.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008871, exon 9 of 9)	3' UTR (NM_008871, exon 9 of 9)	10252.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	3.40136552545686	3.42854643468791	3.40180083457362	3.44406891669721	3.44625214277895	3.51566588240064	3.38921030764021	3.65976081266428	0.280077850086109	0.571334327231916	0.810544780927183
Merged-chr5-117181819-4	chr5	117181757	117181957	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	48269.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	4.93511140193888	4.77802938083861	5.18751536312468	5.23721569261112	4.5716883814436	4.61520520737399	5.01154508039604	4.93260193896435	-0.532625098406766	0.128537746051961	0.398913247084019
Merged-chr6-29768328-4	chr6	29768214	29768414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021414)	promoter-TSS (NM_021414)	-129.0	NM_021414	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	8.39844210542508	8.72948837400294	8.29030875432659	8.33300650174643	8.37678231856079	8.17967386771075	8.51771086521942	8.40476454926408	-0.0921689822192	0.598185682350047	0.825746818830553
Merged-chr19-7019461-4	chr19	7019368	7019568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153795)	promoter-TSS (NM_153795)	1.0	NM_153795	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	7.49234074386753	7.24099630696775	7.14571259610296	7.31829543671638	7.18576045782701	7.02619214162579	7.07501867696365	6.88795502872988	-0.344100355526351	0.0740723547108663	0.293250398992191
Merged-chr11-20937206-3	chr11	20937121	20937321	+	877.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106113.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	3.64972105897407	3.17652689435781	3.55771512696334	3.81466194743099	3.04025829651657	2.90824117878616	2.95004603000639	3.40270186480599	-1.83952517510386	0.00443752371016581	0.0434827230404588
Merged-chr7-19467782-4	chr7	19467676	19467876	+	950.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-9282.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	4.43653392260938	4.635920215953	4.13383922019717	4.21993269208128	4.79755269077909	5.05895877160092	4.66126969568135	4.68059500183782	0.965477392091586	0.00964865459160621	0.0769761920170296
Merged-chr8-8477716-3	chr8	8477628	8477828	+	865.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	183045.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	3.69214678966133	3.49948875424792	3.49638059802712	3.63996228487677	3.20634288166826	3.16933512880443	3.48230590345231	3.32466694390005	-1.01607740929798	0.054807763685219	0.244525624379479
Merged-chr10-119610598-4	chr10	119610472	119610672	+	863.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133442, intron 1 of 21)	intron (NM_133442, intron 1 of 21)	151127.0	NR_045359	75321.0	Mm.402041	NR_045359	ENSMUSG00000084764	Grip1os2	4930564G21Rik	glutamate receptor interacting protein 1, opposite strand 2	ncRNA	3.4538267052734	3.70094871106869	3.99039300840903	3.88125602648082	3.71981505308932	3.81445466007025	3.73458672600169	4.07245514778876	0.18172113741422	0.705194975849563	0.881589707676837
Merged-chr9-56094971-4	chr9	56094867	56095067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	4991.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	5.54436346376095	5.76884002736415	5.36997669717558	5.58875852767517	5.61576923388966	5.66445857096069	5.94822845300533	5.30293927489962	0.1241593345029	0.666050658618018	0.861861238586864
Merged-chr15-78589735-3	chr15	78589659	78589859	+	699.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7288.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	2.9257906717537	3.02402387767579	3.04166106137546	2.98546372433685	2.99899176700407	2.83518508315144	2.65257597427949	2.86291397522154	-0.644184515225112	0.303069568025275	0.615609519504338
Merged-chr14-76942109-3	chr14	76942048	76942248	+	766.305542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94469.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	2.99378727828896	3.23897775622198	3.1501028064067	2.99754281411753	3.71438022417267	4.09198325565865	3.8617837770013	3.8782228351254	2.69801388108659	4.41482725942324e-07	1.65542603498428e-05
Merged-chr6-38550797-4	chr6	38550690	38550890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138680)	promoter-TSS (NM_138680)	-544.0	NM_138680	192196.0	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	5.96972071062012	6.3016654783749	5.94780593457755	6.2669635095194	6.1278998261965	6.16929923825684	6.18614581800174	5.79648132981815	-0.0987222127498051	0.69202946730763	0.87471864571853
Merged-chr3-27202079-4	chr3	27201950	27202150	+	979.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	19046.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	4.39773948672278	4.04693835805541	4.67204150777324	4.58667177027918	4.29148159762254	4.43722205070569	4.24220754013454	4.80179754823652	0.0179021249414618	0.965673801722065	0.9878943061607
Merged-chr13-69533502-6	chr13	69533394	69533594	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001169131, exon 1 of 13)	5' UTR (NM_001169131, exon 1 of 13)	370.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	4.88859180903748	4.73353158515102	5.19746728398194	4.71578305296251	4.53043228325754	4.83688504087343	4.96551166186275	4.69855870789172	-0.260016882707938	0.464364782802976	0.745411142373664
Merged-chr6-99670986-4	chr6	99670900	99671100	+	855.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4229.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	3.9898731704879	4.25390295880415	4.0403278456195	3.94258814525203	4.24861021883587	3.9504631804791	3.69528166873905	4.51949327893335	0.219048741463924	0.636023145807932	0.845993735673956
Merged-chr9-64452925-4	chr9	64452820	64453020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 1 of 24)	intron (NM_001134399, intron 1 of 24)	67294.0	NM_001134399	214058.0	Mm.127721	NM_172522	ENSMUSG00000036466	Megf11	2410080H04Rik|D130061K05	multiple EGF-like-domains 11	protein-coding	6.63245192419993	6.73485245987582	6.4891435667962	6.67809282380855	6.56536158712083	6.31758983992813	6.48941372224397	6.61364773550285	-0.196764187925962	0.350698711323296	0.658186562602986
Merged-chr2-93450922-4	chr2	93450835	93451035	+	874.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136055, intron 1 of 9)	intron (NM_001136055, intron 1 of 9)	1737.0	NM_001271462	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	4.03475769411494	3.98021937195442	3.62645615601485	3.72856037209109	4.00968664252339	3.61745758948716	4.05971089617262	3.84481244123631	0.146112827892383	0.754017274025846	0.903044989089611
Merged-chr2-148048551-6	chr2	148048518	148048718	+	943.0595089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1649.0	NM_010446	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	4.15806208996322	3.99517464248213	4.10675834621161	4.06130013992835	4.46292681683332	4.56473771025525	4.76611671822221	4.69028397578538	1.27886950603082	0.000686422169358783	0.00996915804790631
Merged-chr6-116007968-3	chr6	116007902	116008102	+	755.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12997.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	4.01505728143535	4.07381047611311	3.87081016419857	3.64163357085736	3.7817008314627	4.18505800127145	3.7495723881003	3.86855351696342	0.00575742070864527	0.990101649152157	0.996085111514102
Merged-chr2-4864620-4	chr2	4864491	4864691	+	702.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-16973.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	3.68950206707333	3.50333354344854	3.69002104720189	3.41445083333372	3.8467009497757	3.91431124777147	3.56455248701026	4.0572659636834	0.87451445294542	0.0656702607575002	0.27282691241803
Merged-chr2-84601403-6	chr2	84601382	84601582	+	915.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007615, exon 20 of 20)	3' UTR (NM_007615, exon 20 of 20)	47998.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	3.62966007225216	3.58619964390469	3.77985973309581	3.63847136315618	3.43096426474525	3.63554885377052	3.61560978715979	3.67990665143063	-0.224167826706322	0.63844855320898	0.847153284197798
Merged-chr4-149306926-5	chr4	149306900	149307100	+	885.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008441, intron 1 of 20)	intron (NM_008441, intron 1 of 20)	698.0	NM_207682	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	3.82946893891249	3.53697501014824	4.06436637471952	3.64984137924715	3.97374683570577	4.18937990337674	3.53185538605677	3.92656586898923	0.419359467812908	0.39133855358021	0.69107318593013
Merged-chr19-60757029-2	chr19	60756929	60757129	+	751.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178421, exon 1 of 1)	exon (NM_178421, exon 1 of 1)	1042.0	NM_178421	332397.0	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos C2HC-type zinc finger 1	protein-coding	3.07058172038216	3.01392559837753	2.94707637941559	2.77512889622055	2.91397758495735	3.05696907040009	3.17082748835069	3.23514607512145	0.621667452010514	0.289700941449787	0.601779997997418
Merged-chr9-118666250-4	chr9	118666147	118666347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 8 of 27)	intron (NM_133721, intron 8 of 27)	-45445.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	8.35288618499783	8.32580444825026	8.58495956110901	8.55125692695338	8.45989996114781	8.33541464347845	8.90088542103614	8.42361276466064	0.112564591532647	0.539014858403779	0.791944404209276
Merged-chr14-30617464-3	chr14	30617354	30617554	+	814.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	-7144.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	3.85614260771763	3.85067522974325	3.76222034821795	3.51553310907602	3.55136854667614	3.66606495609144	3.6453662573664	3.48833364760006	-0.486483605605759	0.317034248957803	0.628905690750891
Merged-chr15-59481318-4	chr15	59481225	59481425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	107127.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	5.85950615400439	6.53016274824773	6.0479433308464	5.58726087057239	5.31136988976018	5.89477955090719	5.41114819804162	4.95135527691277	-1.02209942737151	0.00372541959591834	0.0378816630596959
Merged-chr8-88300436-4	chr8	88300330	88300530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037724, intron 3 of 27)	intron (NM_001037724, intron 3 of 27)	6226.0	NM_001037724	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	7.25453637698804	7.22131702122373	7.16697213519377	7.54957060990274	7.26279854734496	6.98867822462226	7.26154282373677	7.28245326786233	-0.15200844758059	0.441378461419117	0.728490411940623
Merged-chr2-118545967-4	chr2	118545873	118546073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 2 of 3)	intron (NM_001331221, intron 2 of 3)	-1386.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	5.42817706958457	5.22619643634519	5.12395515057388	5.1277548362511	5.13978734301128	5.48909160504677	5.22899239681187	5.50401435703687	0.212971410447127	0.475946321004728	0.752613315770901
Merged-chr11-98816945-4	chr11	98816840	98817040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138660, intron 3 of 13)	intron (NM_138660, intron 3 of 13)	-6851.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	6.14326236108999	6.30313606549547	6.24266727894809	6.36694953646719	6.27171709925399	6.07471758792148	6.13318696952747	6.18017541289961	-0.156565691004432	0.487780239145104	0.761057402147961
Merged-chr7-97781013-4	chr7	97780887	97781087	+	931.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-7554.0	NM_001357365	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	4.86079603314489	4.73248777360066	4.14781624182221	4.31616588430571	4.98572838818925	4.99921493032549	5.08402798711665	4.50511767424276	0.782754155831987	0.0469645190826287	0.222844310631453
Merged-chr4-53437511-4	chr4	53437402	53437602	+	965.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2911.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	6.61425829484625	6.99191918158884	6.33594957970675	6.28260782618074	5.94328581198711	6.13209427019928	5.41378320527221	5.21145480052298	-1.31390931080352	4.92263137513494e-05	0.00111659649028276
Merged-chr12-111443740-3	chr12	111443680	111443880	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009396, intron 1 of 11)	intron (NM_009396, intron 1 of 11)	1119.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	5.01291451873094	6.15504223904029	5.85280884475308	5.05069207938051	5.83875886136037	5.67773932196316	5.86557510947305	5.58047217550744	0.224321100628819	0.538468465778177	0.791615484759999
Merged-chr9-40787500-4	chr9	40787387	40787587	+	729.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGAGAA)n|Simple_repeat|Simple_repeat	-13786.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.06964451874014	4.05713284309967	4.17467220510914	4.72940682419752	4.66920277950923	4.44582092379194	4.20589917751261	4.6314406193333	0.436392041113109	0.327638817777543	0.639089183924468
Merged-chr4-49521163-4	chr4	49521090	49521290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289901)	promoter-TSS (NM_001289901)	14.0	NM_001289901	230162.0	Mm.186994	NM_145547	ENSMUSG00000039634	Zfp189	BB131811|C430015I23Rik	zinc finger protein 189	protein-coding	7.87394796023027	7.82243836929142	7.86782066241968	8.32556339026201	7.75888505137523	7.73381735022115	8.32655774622988	7.8625116351898	-0.0717896859738191	0.737447089866998	0.896392006995728
Merged-chr10-44453976-3	chr10	44453867	44454067	+	676.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007548, intron 2 of 6)	intron (NM_007548, intron 2 of 6)	4781.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	3.46126330631554	3.40788862471427	3.24883987030245	3.37965303032228	3.11658761155382	2.9528667726698	3.11714892938965	3.35788102013264	-0.885923426273618	0.117164190725508	0.378643810744651
Merged-chr2-4460302-4	chr2	4460228	4460428	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	59352.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	5.0804936994006	5.27799632219152	5.54079942147864	5.36383263778422	6.38330128089156	5.63094628416674	6.58816125002157	6.56591890839132	1.62948309447056	9.86490649537646e-08	4.22996493635181e-06
Merged-chr1-85933369-4	chr1	85933288	85933488	+	583.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR48B|LTR|ERV1	4905.0	NR_037692	71141.0	Mm.314965	NR_037692	ENSMUSG00000026224	4933407L21Rik	-	RIKEN cDNA 4933407L21 gene	ncRNA	3.5962264640487	3.59647160907064	3.54228488447312	3.3017278318339	3.73532539399941	3.60154057950946	3.82119192087735	3.4243778715565	0.494443774722112	0.318944417441548	0.630823985405764
Merged-chr1-34858813-4	chr1	34858677	34858877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357425, intron 2 of 8)	intron (NM_001357425, intron 2 of 8)	8788.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	6.31964645088012	5.76336664172346	6.2490996458756	6.39068212529181	6.37144153615322	5.91181962644579	5.8586997349668	6.16865760392131	-0.158715316580874	0.560474513346458	0.804525689908393
Merged-chr1-75400885-3	chr1	75400803	75401003	+	842.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173477, intron 1 of 4)	intron (NM_001173477, intron 1 of 4)	818.0	NM_001173477	11790.0	Mm.275397	NM_007463	ENSMUSG00000026207	Speg	AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297	SPEG complex locus	protein-coding	3.14228666361011	3.2943539547381	3.07800256634467	3.34546123764378	3.34587409660487	3.31489177632395	3.41086197282099	3.2614817289636	0.379711033043842	0.480146185227385	0.755678709554239
Merged-chr1-153492059-4	chr1	153491967	153492167	+	996.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4407.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	6.44937405199526	6.0086163058908	6.17456013576045	6.42009028475856	5.05905721208766	5.28677292979978	5.71605330621629	5.5193364562847	-1.42765444802878	7.44092703933882e-07	2.66551457339254e-05
Merged-chr12-40656608-3	chr12	40656505	40656705	+	762.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 8 of 52)	intron (NM_172803, intron 8 of 52)	210552.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	3.59157012578247	3.45493682178376	3.17463721634699	3.55157503466213	3.41162562596182	3.60125540249728	3.71978647954364	3.48384144218473	0.31700078383249	0.539118544513786	0.791983989773924
Merged-chr7-3719380-3	chr7	3719272	3719472	+	871.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011095, exon 4 of 15)	exon (NM_011095, exon 4 of 15)	1010.0	NM_001357394	18733.0	Mm.326531	NM_011095	ENSMUSG00000058818	Pirb	Gp91|LIR-3|Lilrb3|PIR-B	paired Ig-like receptor B	protein-coding	3.87679258434456	3.63621137558193	3.6281190111694	3.76900298584679	4.00910985727862	3.62886851301607	3.71835041987157	3.31844230200226	-0.0846579196565498	0.868663000000994	0.950771369127056
Merged-chr16-93683152-4	chr16	93683029	93683229	+	983.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173047)	promoter-TSS (NM_173047)	-90.0	NM_173047	109857.0	Mm.4512	NM_173047	ENSMUSG00000022947	Cbr3	1110001J05Rik|C81353	carbonyl reductase 3	protein-coding	5.13149160806967	5.35000024490489	5.19620878811552	5.20450034847927	5.07223200470881	4.80042435960726	5.20112664041455	5.33923141563847	-0.195915809077226	0.52668143729449	0.783895717785684
Merged-chr1-9700524-4	chr1	9700429	9700629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290397)	promoter-TSS (NM_001290397)	-320.0	NM_008651	17864.0	Mm.479	NM_008651	ENSMUSG00000025912	Mybl1	A-myb|G1-419-6|repro9	myeloblastosis oncogene-like 1	protein-coding	8.10085855585882	8.23938646564545	8.4058482687017	8.3099241055611	8.26944787573327	8.40333719703348	8.37677925530533	7.82233088924999	-0.040131212704275	0.828707974406028	0.93423605372953
Merged-chr7-4813551-4	chr7	4813484	4813684	+	905.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-1244.0	NM_133777	77891.0	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	4.55921195023191	4.51773382182154	4.0104922264775	4.06254095464797	4.49041033153	4.48783076610214	4.29489621355852	4.51916450346634	0.353451408047829	0.384184791071437	0.685759481012083
Merged-chr11-40855975-4	chr11	40855871	40856071	+	971.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-100685.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	4.8839361153403	4.80214175207666	5.21493302492564	5.1789165059614	5.11814831581776	4.94391840206408	5.24527550512814	4.76332981298705	-0.0100886287036428	0.975865509298804	0.9913954539618
Merged-chr6-135252706-7	chr6	135252628	135252828	+	977.257141	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080553, intron 1 of 5)	intron (NM_001080553, intron 1 of 5)	1608.0	NM_010352	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	5.95824351351263	5.25798451579145	5.57382109956141	5.95752442230216	4.15400847968943	4.72773326940474	4.91565623092389	4.58361540773147	-2.15064807064863	1.37169677346371e-08	7.10080033733624e-07
Merged-chr14-103487162-4	chr14	103487062	103487262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26179.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	7.17770936925532	7.07098238540748	7.69926011387315	7.54881976658617	7.44218938595735	7.32072184456015	7.3048654443848	7.10308856342499	-0.137737549320279	0.52274765524058	0.78208877064842
Merged-chr17-5402229-4	chr17	5402129	5402329	+	953.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16538.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	4.53020126503431	4.88133497380317	4.6885780713556	4.42459347136442	4.90877109652097	4.61985153381901	4.51019317675484	4.14121001993802	-0.110967677147302	0.783184769805596	0.915515669194523
Merged-chr6-17625202-2	chr6	17625113	17625313	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-11797.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	2.97739923405542	3.10383013602135	2.97778944243928	2.87462252735468	2.75646081972314	2.67416171167287	2.84585499323669	3.03320986405869	-0.673218817638211	0.283832978237266	0.595904420197338
Merged-chr7-89215925-4	chr7	89215837	89216037	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 5 of 14)	MTC|LTR|ERVL-MaLR	122850.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	4.98410596585189	5.00064515521247	5.325367726286	5.28363214059355	5.06489488333955	4.79978733727034	5.0624771457894	5.05063328739711	-0.309278191482907	0.328670670380249	0.640138323335519
Merged-chr19-53420011-3	chr19	53419909	53420109	+	957.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58A|DNA|hAT-Charlie	-29375.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	4.37512797369598	4.44386042446819	4.55976300715219	4.21388014760547	4.03532929523497	3.96567103234217	3.99469712980215	3.95515122121629	-1.03957345808994	0.0125825449458501	0.092886638321994
Merged-chr5-65722726-4	chr5	65722607	65722807	+	897.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_I-int|LTR|ERV1	-24851.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	4.16897453288679	4.55016251626414	4.4448298450714	3.79969322527051	4.63857565297462	4.84042017995571	4.20128949721739	4.31172586344269	0.600500966946605	0.17695506654888	0.472185620690969
Merged-chr6-142345738-6	chr6	142345628	142345828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183165)	promoter-TSS (NM_183165)	31.0	NM_183165	232491.0	Mm.490474	NM_183165	ENSMUSG00000041671	Pyroxd1	-	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding	6.73946336495932	6.83621606304838	7.37686039923691	6.75219297557119	6.86566593402455	7.04621208220636	6.76498084853394	6.87815298043581	-0.0767595515080921	0.737331983082982	0.896374281276027
Merged-chr5-108485431-4	chr5	108485329	108485529	+	876.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172716, intron 6 of 10)	intron (NM_172716, intron 6 of 10)	24097.0	NM_172716	69587.0	Mm.261218	NM_172716	ENSMUSG00000033623	Pcgf3	2310035N15Rik|AI662857|D630042K08Rik|DONG1|E430039C14|RNF3A|Rnf3	polycomb group ring finger 3	protein-coding	4.14841487922107	4.30353144296775	4.37830172939851	4.27080020662247	4.34816546359134	4.32476044105004	4.22723358339077	4.63925998683346	0.275555693494521	0.474181529310509	0.751607118426792
Merged-chr13-102094332-4	chr13	102094270	102094470	+	867.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-326153.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.18300700136237	4.2543177233545	4.08361648986283	4.40110514554184	4.33457825645203	4.40347732105065	4.34338465468923	4.44136033138124	0.305185663485201	0.430706550530564	0.721216765724688
Merged-chr2-153240862-5	chr2	153240754	153240954	+	890.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080463)	promoter-TSS (NM_080463)	504.0	NM_018807	54711.0	Mm.103199	NM_018807	ENSMUSG00000051413	Plagl2	AU018672|AW552839|mKIAA0198	pleiomorphic adenoma gene-like 2	protein-coding	4.02539727716627	3.69114032795884	3.77853585476438	4.17658313796019	4.01936226756084	3.84124996343804	3.86738021675169	3.93037141950758	-0.0745375080373483	0.870695822071356	0.951430072143722
Merged-chr17-17906130-3	chr17	17906032	17906232	+	664.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18308.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	3.24940981337682	3.08803711724498	3.18300399984872	3.3007189081644	3.5881695577665	3.94498283395473	3.36140123006351	3.68724203595161	1.48427618603248	0.00593730515958728	0.0538632990000335
Merged-chr2-150842338-4	chr2	150842221	150842421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 5 of 12)	intron (NR_151505, intron 5 of 12)	249.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	6.00203362498936	5.63604441797242	5.87016595749587	6.48830655396734	5.50891759009836	5.81847042331469	5.88580574033826	5.95606129293461	-0.418032353326907	0.166651223430124	0.457960964592688
Merged-chr19-34420618-4	chr19	34420521	34420721	+	948.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54514.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	4.66842239092482	4.56952100004393	4.85320847821098	4.52414790489521	4.20710541239879	5.05783492301857	4.68577892502385	4.94856276466814	0.21483895340785	0.585906395752922	0.818478990587386
Merged-chr2-129912461-1	chr2	129912361	129912561	+	898.6666869999999	f0_balb.idr	Intergenic	Intergenic	-99879.0	NM_009374	21818.0	Mm.2961	NM_009374	ENSMUSG00000027401	Tgm3	AI893889|TG E|TG(E)|TGE|TGase E|TGase-3|we	transglutaminase 3, E polypeptide	protein-coding	3.82939512740335	3.65521518280491	3.78838912248928	3.78273835156945	2.84976146587441	2.94615369002738	2.98685275718164	3.13963454525621	-3.55640337090565	1.00116071443429e-06	3.50524439216518e-05
Merged-chr6-100800650-4	chr6	100800534	100800734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198612, intron 6 of 6)	intron (NM_198612, intron 6 of 6)	-33004.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	6.44783846046432	6.428830124436	6.46572835177984	6.46972312665188	6.59797874808055	6.57306876381299	5.93094392809486	6.24383895785935	-0.12087359959436	0.619035244052218	0.836259425541954
Merged-chr16-24685197-3	chr16	24685100	24685300	+	870.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 7 of 12)	(A)n|Simple_repeat|Simple_repeat	-36655.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	3.72469671498222	3.35588694270558	3.4846170558023	3.40933064277135	3.50398258568571	3.23013578547962	3.36134568269883	3.31308012065508	-0.45663522551562	0.387643608830153	0.688489915228238
Merged-chr13-32801948-4	chr13	32801843	32802043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030215)	promoter-TSS (NM_030215)	-87.0	NM_030215	78903.0	Mm.286680	NM_030215	ENSMUSG00000021400	Wrnip1	4833444L21Rik|WHIP|Wrnip	Werner helicase interacting protein 1	protein-coding	8.80482369076349	8.86912921479452	8.85020495870477	8.97847822059376	8.88952398239726	9.02411620046947	8.99621617412873	8.91353131575712	0.0922018869391595	0.512764891945746	0.776017039843318
Merged-chr14-118900582-3	chr14	118900488	118900688	+	970.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360411, intron 11 of 21)	intron (NM_001360411, intron 11 of 21)	22203.0	NM_001360413	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	4.61502699824138	4.26640166758978	4.93760144831878	5.12569126393703	4.16668027338387	3.9626524150314	4.00463991541744	4.07486582633081	-1.7335041964064	9.35029686562861e-05	0.00191799648587487
Merged-chr11-89026821-3	chr11	89026703	89026903	+	714.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	27400.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	3.5387727810959	3.26024934446403	3.43650586456636	3.14215647746334	3.34610483115704	3.43863527322555	3.31228460022925	3.37997509450349	0.100451777178193	0.849410060181279	0.943120119372541
Merged-chr10-52309375-4	chr10	52309262	52309462	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025705, intron 6 of 10)	intron (NM_025705, intron 6 of 10)	72762.0	NM_053187	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	5.68214182579977	5.24646426415357	6.08039651237497	6.11195888220004	4.76469355135922	4.85943523786162	5.11002542459577	5.26791441357286	-1.46662851722236	2.25983862818406e-05	0.00056798394673557
Merged-chr10-54054392-4	chr10	54054310	54054510	+	978.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 2 of 12)	MTD|LTR|ERVL-MaLR	21386.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	4.41271133145973	5.31266245399494	4.32160440882893	4.38899030337566	4.50213614096552	4.71410062357611	4.09956506539797	3.93779952199221	-0.73383434001989	0.134515781186912	0.408198277161632
Merged-chr2-30364114-4	chr2	30363997	30364197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175392)	promoter-TSS (NM_175392)	-136.0	NM_001242407	108958.0	Mm.254974	NM_175392	ENSMUSG00000026858	Miga2	5730472N09Rik|AA408683|AI790341|C9orf54|Fam73b|R74766	mitoguardin 2	protein-coding	8.61340542863397	8.57977106796221	8.23102429000052	8.44949179904357	8.60495292238961	8.438682350247	8.51127902383548	8.43725721393012	0.032103387268898	0.841818616708354	0.93994803474123
Merged-chr11-116089200-4	chr11	116089101	116089301	+	890.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2206.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	4.60967519458926	4.64475100317431	4.01593669988122	3.65829392473764	4.6308202670457	4.40761410914259	4.47406880737906	4.64340286700125	0.572195705449875	0.2201820584938	0.528002970789744
Merged-chr1-54837862-4	chr1	54837736	54837936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	88551.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	6.71479708402402	6.45096927376179	6.729915494947	6.79106839021217	6.00997664561549	6.40293213769088	6.46929546789544	6.46426547595668	-0.504295738706293	0.0299010498031825	0.166875241017777
Merged-chr7-66388319-4	chr7	66388234	66388434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146191)	promoter-TSS (NM_146191)	7.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	5.93816554664295	5.81709035217794	5.48457210879692	5.67032861490704	6.20244856502022	6.17996920154415	6.22364473161454	6.12263617122553	0.711139846559561	0.00349258356818838	0.0360026945401999
Merged-chr8-84986056-6	chr8	84985940	84986140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4555.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	7.64626759633041	7.91949085494968	8.07888399119158	7.51866285413709	7.61829860412099	7.75399396243155	7.68512480898596	7.87708502641188	-0.0882759945997026	0.651642753319387	0.85410966630797
Merged-chr6-52488017-4	chr6	52487930	52488130	+	859.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4421.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	4.69864953774893	4.55945663082267	4.80554105422831	4.94788206746306	4.47292208944159	4.33973859979578	4.6771385359329	4.36100436773797	-0.659974345832073	0.0723851253270446	0.289130237691005
Merged-chr18-34222269-4	chr18	34222201	34222401	+	810.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040534)	promoter-TSS (NR_040534)	-529.0	NR_040534	633395.0	Mm.414290	NR_040534	ENSMUSG00000073607	Gm10548	-	ribosomal protein L29 pseudogene	pseudo	3.73694879734552	3.59982208024857	4.01991610716293	3.80668420025076	4.01992405824094	3.74485814775988	3.66939144829339	3.62563173600838	-0.0384035953085484	0.935705638993612	0.976639892179174
Merged-chr1-135686910-4	chr1	135686802	135687002	+	963.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33161.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	4.9832545461748	5.32212683991447	5.01752542877257	5.1315305090299	4.5602279624009	4.62959106407256	4.85489461810583	4.9807040635747	-0.729810750645907	0.0298176839982305	0.166540562563563
Merged-chr6-54760319-4	chr6	54760195	54760395	+	834.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56621.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	3.58748243030631	3.9056723177976	3.85720052189233	3.84538515531572	3.83146450159891	3.57798656019019	3.84091800273342	3.99267276101082	0.0363332881229425	0.937279503190331	0.977282228830088
Merged-chr7-116625598-4	chr7	116625471	116625671	+	974.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	121202.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	4.99240266021334	5.50506153504672	5.56111238203185	5.71817162752587	5.03553719816154	4.88406210648691	5.00615112673245	5.19776309179939	-0.825578801548454	0.0111054021062799	0.0850243537187152
Merged-chr6-52488934-2	chr6	52488834	52489034	+	647.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3517.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	3.52299588832027	3.72238433867362	3.30816133675554	3.17606177432617	3.30039327319228	3.36150210746558	3.23663115040758	3.04917467985861	-0.725166414656936	0.20435906245156	0.507574628593747
Merged-chr11-70595826-4	chr11	70595715	70595915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	intron (NM_016713, intron 1 of 30)	-20079.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	6.69521923694536	6.37916484423382	6.01694604413807	6.19791962593828	6.8410059003984	6.82846252169286	6.3778107744238	6.55696251809151	0.480926866755525	0.0539930107803728	0.242639593051086
Merged-chr13-59675770-4	chr13	59675645	59675845	+	909.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027307)	promoter-TSS (NM_027307)	39.0	NM_001035122	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	3.55723546994162	3.80286319303464	3.92303682138394	3.72486477008848	3.58165710072789	3.73424786830856	3.90562754298987	3.87443649745054	0.0538880436347251	0.907941158334994	0.965929300548068
Merged-chr5-146948648-4	chr5	146948528	146948728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025652)	promoter-TSS (NM_025652)	-29.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	6.75050174063132	6.91920844556437	6.82889958998256	6.90040007770703	7.47394380762438	7.69297698344722	7.49614697514001	7.64248325953817	0.972267164413199	1.02174270641003e-07	4.36534358340692e-06
Merged-chr11-97315228-3	chr11	97315141	97315341	+	837.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025927)	promoter-TSS (NM_025927)	-475.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	3.74637039262135	3.83537198990441	3.50363754150847	3.44686402747968	3.37701438382668	3.17351082061593	3.05402857048074	3.44694772533415	-1.26866688498025	0.0255121501502096	0.150574571769632
Merged-chr16-90213567-2	chr16	90213467	90213667	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7175.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	2.84096773001874	2.51112076617678	2.64139259433626	2.74556905416632	2.89027416924195	2.94976780397703	3.05396392536686	2.83988475828961	1.09916134110069	0.0845216677510322	0.316357353360189
Merged-chr12-24780795-1	chr12	24780695	24780895	+	959.0	f0_balb.idr	Intergenic	Intergenic	-50804.0	NM_026037	67216.0	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	3.19031880125026	2.96892962760287	3.29513421499814	3.55651289740987	2.58035515847715	2.77042199745079	2.807427618315	3.07549018901166	-2.08700230465157	0.00349008192929476	0.0359909070480968
Merged-chr6-29252321-4	chr6	29252246	29252446	+	954.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20142.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	5.00186432445799	4.67613424425971	4.77838616849642	4.4299427514678	5.58302754943077	5.03525341507601	5.52163200144265	4.73385029269268	1.0649373520267	0.00420290233647345	0.0416771225143276
Merged-chr5-113840630-3	chr5	113840535	113840735	+	967.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-10134.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	4.33295534570781	4.60740116891783	4.54679156204311	4.90148701649802	4.31434188372848	4.50835640378288	4.35980188534071	4.23493611363367	-0.636174228206077	0.102900953218479	0.352235594360784
Merged-chr17-5747611-4	chr17	5747574	5747774	+	945.522217	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 8 of 8)	intron (NM_146073, intron 8 of 8)	-50983.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	3.88711130565622	3.78845927478191	3.77743109037716	3.95990668259255	4.20154903503367	3.89830951684429	4.0655024528541	4.4344287200851	0.804352904724306	0.0651911918342303	0.271724766854171
Merged-chr1-156042063-3	chr1	156041968	156042168	+	937.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172843, intron 2 of 6)	intron (NM_172843, intron 2 of 6)	1207.0	NM_022329	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	3.2232324092442	3.25174149181798	3.54358769491121	3.21534406007017	4.11530142276926	3.87628988535137	3.52940591052508	3.88922074969366	1.80222634153667	0.000382638481682507	0.00620264734403989
Merged-chr11-75486696-4	chr11	75486613	75486813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138659)	promoter-TSS (NM_138659)	-64.0	NM_138659	192159.0	Mm.3757	NM_138659	ENSMUSG00000020850	Prpf8	AU019467|D11Bwg0410e|DBF3/PRP8|Prp8|Sfprp8l	pre-mRNA processing factor 8	protein-coding	8.39871654914079	8.33141500551247	7.87106851044468	7.89868471584114	8.30032953140131	8.07900228435291	8.12469167079852	7.975614450073	-0.0182841373959441	0.925190939778697	0.97241738811813
Merged-chr9-80066988-4	chr9	80066903	80067103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146003)	promoter-TSS (NM_146003)	100.0	NM_146003	215351.0	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	5.82243647723657	5.26734539031167	5.96996213811787	5.54324925568138	5.45203665256438	5.64272538826573	5.65369426925041	5.57505977585351	-0.148021689220748	0.612466143775798	0.832786881023488
Merged-chr7-114276677-4	chr7	114276597	114276797	+	928.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011965)	promoter-TSS (NM_011965)	-581.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	3.96157665537112	3.81690324175035	4.29841979683291	4.23784311527534	4.27595846635495	4.14025646642243	4.57507413014769	4.29567451657514	0.566900544228877	0.18184832707022	0.478495511165252
Merged-chr13-41539767-1	chr13	41539667	41539867	+	561.0	f0_balb.idr	Intergenic	Intergenic	-52407.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	3.07669957367735	3.10225733991064	3.02051342530149	3.08363061984865	2.83530148970245	2.72030788881279	3.00920066810604	2.83279360400958	-0.970807692717093	0.11372820172726	0.372943174187234
Merged-chr14-79461090-2	chr14	79460990	79461190	+	734.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018765, exon 10 of 10)	3' UTR (NM_018765, exon 10 of 10)	9255.0	NM_001034882	432879.0	Mm.308666	NM_001034882	ENSMUSG00000075502	Kbtbd6	EG432879|Gm5465|Zbtbd6	kelch repeat and BTB (POZ) domain containing 6	protein-coding	3.27644659759982	3.36566446241047	3.50037752467042	3.21408482714116	3.26310582983303	3.32675340332532	3.48570525815419	3.54850669748055	0.254275957493453	0.625481689877601	0.83995595021038
Merged-chr8-25543525-4	chr8	25543445	25543645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079909, intron 2 of 16)	intron (NM_001079909, intron 2 of 16)	12538.0	NR_110510	102633315.0	Mm.437828	NR_110510	ENSMUSG00000086134	Gm16159	-	predicted gene 16159	ncRNA	5.64470780072298	5.33355284385494	5.2726175299919	5.62093639580372	5.73651711429279	5.27538216985011	5.88274808470354	5.48311481746365	0.231297558501232	0.436026361964143	0.724953319104812
Merged-chr3-95855860-4	chr3	95855780	95855980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027541)	promoter-TSS (NM_027541)	5.0	NM_001316751	70767.0	Mm.279872	NM_027541	ENSMUSG00000015748	Prpf3	3632413F13Rik	pre-mRNA processing factor 3	protein-coding	6.91187212645747	6.65854282776579	6.33293411887651	6.57927847130595	6.84677242979148	6.8402500015919	6.82699588462315	6.65909279404598	0.232765608854049	0.282849924772242	0.595041976860567
Merged-chr2-128125914-4	chr2	128125804	128126004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207680)	promoter-TSS (NM_207680)	-134.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	7.72424022646858	8.00241719370838	7.47439024593652	7.41590239638887	7.72599108964885	7.66140714572188	7.11176766284399	7.51626690611372	-0.19010833198931	0.393226068685903	0.692367387227111
Merged-chr17-55721502-4	chr17	55721426	55721626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8890.0	NR_151542	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	6.84465400762211	7.52746223839496	6.99363385443886	6.73762062656224	6.28198839368229	6.49748360030071	6.11681971187156	5.86812451841341	-1.22692420528558	6.22008467486659e-06	0.000180268488221632
Merged-chr1-136676508-4	chr1	136676414	136676614	+	856.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6882.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	4.03644276811301	4.31597408952494	4.23306423373636	4.14044244376953	4.05808646709287	4.75473939633759	4.071626123462	4.27507624789239	0.315692257011067	0.461325443480478	0.743096330342324
Merged-chr19-55743146-4	chr19	55743062	55743262	+	895.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001331147, exon 3 of 14)	exon (NM_001331147, exon 3 of 14)	1352.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.36669278477967	4.61463276065313	4.36738130895048	3.8203171333945	4.23833855645033	4.77809080213589	4.34746145823816	4.5296981030546	0.395153620733536	0.365969822380759	0.670587077275756
Merged-chr18-42762128-3	chr18	42761937	42762137	+	949.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028392, intron 1 of 8)	intron (NM_028392, intron 1 of 8)	137469.0	NR_073583	72930.0	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	3.27197419237971	3.23987023147469	3.27243292390572	3.2968045291334	3.10309380666837	2.94222356788701	3.0313007367925	2.97512872236703	-1.02526731907202	0.0744402655216439	0.294055367088356
Merged-chr13-106691956-4	chr13	106691849	106692049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2c|LINE|L1	245009.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	6.64714638417838	6.84339684457756	6.43141804903711	6.70504995676746	6.86765474938073	6.74574919072149	6.61442037887284	6.40851713277947	0.00993806487759533	0.964316106235715	0.987309283922085
Merged-chr18-34781305-3	chr18	34781203	34781403	+	849.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081256, intron 1 of 23)	intron (NM_001081256, intron 1 of 23)	4295.0	NM_001081256	277250.0	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	3.42237402133845	3.44868311418158	3.36421874248011	3.67420608648945	3.52127183242402	3.28129527261626	3.61820057768229	3.5820362507218	0.0430921062910056	0.93335280551543	0.975967471696899
Merged-chr2-30929907-4	chr2	30929835	30930035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23066.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	5.32253943608554	5.98299951024107	5.00475300420223	4.76594300837596	5.70119408432245	5.9640749800632	5.23285191812988	5.49547949659539	0.463144042431339	0.23132879228226	0.540831366410565
Merged-chr8-68456860-4	chr8	68456710	68456910	+	899.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172753, intron 4 of 9)	RMER16_Mm|LTR|ERVK	88351.0	NR_038181	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	4.6275790175728	4.67028383205958	5.26822712636504	3.93133707539525	4.69891180239412	4.1388557074209	4.31132463138213	4.17696032627072	-0.774268305701649	0.114839777445444	0.374979610018316
Merged-chr13-98925664-4	chr13	98925559	98925759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 1 of 23)	intron (NM_178716, intron 1 of 23)	725.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	5.98477616407212	6.37203575505344	6.24058729053001	6.14086042445094	6.33626154706153	6.54324933491575	6.12972899215757	6.34641890464904	0.230888004231159	0.323670418394927	0.635160363667085
Merged-chr17-65782860-4	chr17	65782738	65782938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104465)	promoter-TSS (NR_104465)	-517.0	NR_152099	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	6.33576238321727	6.5142691698889	6.785690824097	6.12439873314342	6.31287987203234	6.60258707491055	6.30443315108378	6.45621436502114	-0.0422428628729872	0.864362013148141	0.949143390781869
Merged-chr18-61549016-4	chr18	61548912	61549112	+	882.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6261.0	NM_001357499	93687.0	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	4.37222120035647	4.37321768488216	4.23514888317251	4.33750456508536	4.17009241043986	4.62821213383903	4.69124494612684	4.32590475864456	0.304687396405525	0.434964689934364	0.724182035180557
Merged-chr16-36714363-4	chr16	36714289	36714489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 3 of 7)	RLTR28|LTR|ERVL	20411.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	5.84223895621869	6.0061802521952	5.46530171490921	5.93773846757118	5.69947196360997	6.14973880004908	5.94554742177363	5.5812030404328	0.0283702870897804	0.919592235574552	0.970343257381288
Merged-chr12-69127390-4	chr12	69127284	69127484	+	921.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31802.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	4.67633452609132	4.60046052973357	4.52060596343579	4.67934454258437	4.63418916420578	4.56434991256763	4.54064453214709	4.33978052439737	-0.211845945672983	0.551253522179564	0.798837168776829
Merged-chr7-16219654-1	chr7	16219554	16219754	+	740.0	f0_balb.idr	intron (NM_001285931, intron 1 of 16)	intron (NM_001285931, intron 1 of 16)	2339.0	NM_001285931	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	3.38925447420259	3.25427578004878	3.63071086537673	3.93850321899556	2.64395746916268	2.91155168007065	3.01581440633603	2.95293156593892	-3.27940262707784	1.8130615826968e-05	0.000467579385488317
Merged-chr10-37397638-8	chr10	37397536	37397736	+	981.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-258710.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	4.42101205566189	4.15639587368349	4.79590944636579	4.50296789866082	4.33571646224485	4.71729724879669	4.3579508984366	4.5030117494543	-0.0119498106266404	0.975776103792911	0.991347073148764
Merged-chr1-74712989-5	chr1	74712832	74713032	+	933.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024264)	promoter-TSS (NM_024264)	-603.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	4.22318336711105	3.75375788749979	3.73064590852864	4.05018492195896	3.98673212465278	4.02129089222221	4.16314485344769	4.22112286752127	0.366895034986942	0.405303828645684	0.702237410904421
Merged-chr10-81643738-4	chr10	81643610	81643810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027480, exon 17 of 20)	exon (NM_027480, exon 17 of 20)	-5359.0	NM_001142963	100233208.0	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	-	predicted gene 10778	protein-coding	7.8942526858972	7.68682784123788	7.92281254434472	7.74619155071893	7.47047454716549	7.39552397778686	7.45570709833892	7.33618966182277	-0.518728217661072	0.00247687975803143	0.0275816370927596
Merged-chr10-68134735-4	chr10	68134646	68134846	+	953.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 5 of 9)	intron (NM_023598, intron 5 of 9)	143980.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	4.36079668527242	4.0075276900286	4.53061646139173	4.70134226906524	4.32143202982636	4.70201532555621	4.78922391086187	4.16463307902379	0.181494125066051	0.674491247973145	0.866144208984521
Merged-chr3-105898635-4	chr3	105898664	105898864	+	986.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	(TCCC)n|Simple_repeat|Simple_repeat	-5657.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	3.43969690599877	3.32292493411818	3.55057572975928	3.70427762703701	3.45212189904253	3.36687674168941	3.48303081034672	3.7883080139164	0.0293773728411336	0.954894645941599	0.983880692560683
Merged-chr1-9857764-4	chr1	9857679	9857879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037759, intron 1 of 16)	RMER13B|LTR|ERVK	9498.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	6.50511287323581	6.65106144894455	6.83597924493638	6.37341623954758	6.57159432153473	6.09056825520079	6.35313894775144	6.34464915969352	-0.338036868770206	0.156800187310153	0.442893690014765
Merged-chr1-180261625-2	chr1	180261525	180261725	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5325.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	2.47850961324316	2.60723854670443	2.55358905466255	2.54771612517186	2.77879120109426	3.09730782544832	2.80639136298723	2.75484206689156	1.51874998559014	0.0199273007852735	0.127738233302862
Merged-chr12-54959771-4	chr12	54959676	54959876	+	988.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 3 of 26)	L1MB4|LINE|L1	26560.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	5.98601999698062	5.77367856160167	5.37228126295996	5.79934115437373	5.51817944520804	5.75158672756968	5.28136675621077	5.39979440975217	-0.434050007876208	0.134117465194026	0.407789280437658
Merged-chr9-21798678-4	chr9	21798582	21798782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145611)	promoter-TSS (NM_145611)	-136.0	NM_145611	235041.0	Mm.257371	NM_145611	ENSMUSG00000032194	Kank2	AI504612|Ankrd25|BC010245	KN motif and ankyrin repeat domains 2	protein-coding	6.70729227100143	6.88174773923545	7.38525712114325	6.71056044398483	6.40511411526235	6.67513797510452	6.49854286497605	6.76216477237036	-0.507669432394024	0.0373677430492589	0.19294007986949
Merged-chr11-75966674-2	chr11	75966574	75966774	+	870.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-33238.0	NM_198637	74230.0	Mm.271247	NM_198637	ENSMUSG00000053783	1700016K19Rik	Liat1	RIKEN cDNA 1700016K19 gene	protein-coding	3.10757481090744	2.94035131163851	3.26032123278226	2.7901908412494	2.87914973359032	2.76744274486725	2.79632226626881	2.87010533859447	-0.877303070142505	0.169737925998	0.462460319028196
Merged-chr18-61105785-4	chr18	61105703	61105903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001037859, exon 2 of 22)	5' UTR (NM_001037859, exon 2 of 22)	231.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	7.23679531212938	7.51049515136948	7.19501527188236	6.69248148624737	7.21312885126411	7.02142410187572	6.99606121765926	6.98862888546252	-0.163405216048064	0.484409090152353	0.758525197917074
Merged-chr6-82751195-4	chr6	82751097	82751297	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 2 of 17)	intron (NM_013820, intron 2 of 17)	23257.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	5.59801904383185	5.2900258445204	5.44336924748197	5.50897889559636	5.5374458986767	5.1234229237278	5.07173807316792	5.41165999160575	-0.268805718663594	0.368897336959352	0.673292739491519
Merged-chr3-88138924-4	chr3	88138802	88139002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3470.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	5.66498127493199	5.09482964512628	5.48590695468604	5.3683044092085	5.38046631342983	5.66004038913795	5.34347205929153	5.73176699936797	0.211853601582304	0.476015429691057	0.752669508239473
Merged-chr4-129067756-4	chr4	129067664	129067864	+	784.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	9493.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	3.79759946076164	3.86003550584889	3.5764683476145	3.61494969344818	4.14870029041864	4.01790302995926	3.62180972300059	3.68996026525116	0.528888526112771	0.267221457732185	0.578889139572816
Merged-chr9-45306926-4	chr9	45306821	45307021	+	757.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12179.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	4.03120611767566	3.86245863025152	3.63963287710684	3.79784953557016	3.80011500240062	3.75713804937612	3.6260631597277	3.84850543826739	-0.22165509066624	0.628506094923732	0.841555695467787
Merged-chr2-4504831-4	chr2	4504722	4504922	+	874.208374	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-54932.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	3.05971307651263	3.25973328610415	3.26529516504755	2.76944671759873	3.46850882066658	3.44596929544498	3.76604855712137	3.86460336375637	1.99680702779628	0.000506506459485989	0.00779179236649086
Merged-chr14-121937833-4	chr14	121937754	121937954	+	840.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-22080.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	4.09830502488262	4.06083855436367	4.44481709367764	3.6315067292776	4.38534367810035	3.94955953348654	4.72157039146551	4.09643065361125	0.596069409505759	0.213632768947591	0.519130001583209
Merged-chr16-36706651-3	chr16	36706542	36706742	+	889.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 1 of 7)	intron (NM_001285788, intron 1 of 7)	12664.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	3.2973067868341	3.61348394233123	3.78498651576454	3.15109624508419	3.12113457256245	3.14913672183125	3.09709648817104	3.35385010587925	-1.0854419964114	0.0653999432940651	0.272266249099056
Merged-chr9-109038616-4	chr9	109038495	109038695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284332)	promoter-TSS (NM_001284332)	28.0	NM_025858	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	6.43166390673022	6.1886012843479	6.07289635812316	6.00169452453877	6.23227313212412	6.60730199365465	6.34967478830655	6.13261803309149	0.249016439985339	0.307735390761364	0.620096743828647
Merged-chr13-64129793-3	chr13	64129696	64129896	+	786.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001321)	promoter-TSS (NM_001001321)	-466.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	4.06848078941834	4.11923764904475	4.34171545483316	3.95279358591659	4.25601506046104	4.03121837872741	4.36145879875118	4.49249004878973	0.451036024187366	0.271178946499619	0.582973308151507
Merged-chr4-46450990-4	chr4	46450889	46451089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130889)	promoter-TSS (NM_130889)	63.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	7.88980432666466	7.45732824295524	7.7212562869119	7.59803225094466	7.87790562795644	8.09013636289924	8.31162899042004	7.9213681316758	0.503389724587745	0.00770679191354308	0.0654139925607063
Merged-chr8-85027221-2	chr8	85027121	85027321	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026760, exon 1 of 3)	exon (NM_026760, exon 1 of 3)	388.0	NM_026760	68544.0	Mm.196005	NM_026760	ENSMUSG00000041203	Trir	1110002H14Rik|2310036O22Rik|AI854688	telomerase RNA component interacting RNase	protein-coding	5.26627367401978	5.4007847896483	5.20637688836051	5.04607962547803	5.04768853542768	5.06835248154131	5.35357963829161	5.07184483161069	-0.16201391255911	0.597700282299441	0.825514366535857
Merged-chr15-79742568-4	chr15	79742446	79742646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205345)	promoter-TSS (NM_001205345)	-10.0	NM_001205345	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	6.71663534913566	6.98667239509889	6.28060612976498	6.45264856711645	6.9124493197244	6.95180796466708	6.78257960093573	6.79868762986749	0.326815134827372	0.158647645851978	0.445669775992498
Merged-chr12-26456563-4	chr12	26456481	26456681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021384)	promoter-TSS (NM_021384)	-129.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	7.60251292505805	7.81826709576301	7.32570748452772	7.66024821319238	7.63074946917856	7.55570445051504	7.39194417641047	7.43342671933162	-0.143987008427026	0.443480401907682	0.729973488022342
Merged-chr19-40684271-4	chr19	40684164	40684364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	24494.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	8.40739937361102	8.56702439903897	8.44950203379699	8.50077807119643	8.21761458404464	8.35993591950944	8.35402755635694	8.12620895008292	-0.276386421076439	0.0710149027660109	0.285822435056935
Merged-chr7-64285767-4	chr7	64285665	64285865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1905.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	5.95840820433136	5.88461368189059	5.6963130681753	6.22389623617452	6.16197713531485	5.94881458220558	5.64165744525822	5.63866120180411	-0.149283471214664	0.597078877326735	0.825072362827406
Merged-chr14-26636869-4	chr14	26636779	26636979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1255.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	5.76476421648488	5.42992763612678	5.3254902698704	5.29318581632022	5.5264756589824	5.53115477055217	5.41655035455293	5.19158965853915	-0.0491389275831685	0.867468775031391	0.950331199983684
Merged-chr3-127289067-3	chr3	127288964	127289164	+	965.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	RMER5|LTR|ERV1	119994.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.21590565969113	3.31546695387254	3.3648196301453	2.99183110295022	4.05519963347972	4.06596899612397	4.24259751061156	4.33175567996733	3.10205699368404	3.80313236174288e-10	2.64616968109967e-08
Merged-chr6-115470024-4	chr6	115469916	115470116	+	921.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 6 of 7)	intron (NM_001308354, intron 6 of 7)	47950.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	4.96410507498247	4.42390266051009	4.96494010800091	5.28083447698824	5.00167851841623	4.70532559986398	4.63866276311983	5.20698749561185	-0.0892993372735889	0.81766258481832	0.929981783742416
Merged-chr16-81462864-1	chr16	81462764	81462964	+	698.333313	f0_balb.idr	intron (NM_001113208, intron 7 of 17)	L1Md_F2|LINE|L1	262167.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	3.52185463406677	3.24617030253168	3.4741887876799	3.48581878816515	3.19348063674009	2.88243818158239	3.35811479225383	3.00333530397244	-1.17717230449867	0.0493168492826278	0.229734419370164
Merged-chr3-100920868-4	chr3	100920764	100920964	+	865.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1629.0	NM_001165952	229644.0	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	4.03447691238361	4.19451373529176	4.30547465547219	4.16945080644594	4.32582721284107	4.10656803418678	3.91525487284149	4.12921800595069	-0.10629616718532	0.797045244465334	0.92148521127958
Merged-chr2-38950599-4	chr2	38950473	38950673	+	984.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172854, intron 4 of 7)	intron (NM_172854, intron 4 of 7)	18593.0	NM_172854	241327.0	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	6.17593951556921	5.51257494031228	6.54537060853913	6.54696047088385	5.74626078841666	5.48576328123942	6.04876802061718	5.40266537274697	-0.891509808580636	0.00713991202554953	0.0618078926848791
Merged-chr6-92988375-3	chr6	92988226	92988426	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	47744.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	6.66739643712276	6.70149070656223	6.84362123680238	7.07878286101698	4.24751699375443	4.6770323794907	4.50258077856608	4.58027992627078	-4.45167204604752	3.05994711339757e-34	5.44509938961314e-31
Merged-chr3-152402510-4	chr3	152402398	152402598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287139, intron 1 of 13)	intron (NM_001287139, intron 1 of 13)	5814.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	7.57763709672928	7.31491687488764	7.83800375147523	7.72681516400392	7.47475857765144	7.5061180741299	7.24889495757929	7.49264135597134	-0.259109598735768	0.180716140521974	0.477086053193887
Merged-chr13-98832610-4	chr13	98832512	98832712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17163.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	7.86450339606774	7.93932399200514	7.99332660574917	7.8748626457205	7.866179841641	7.88456109289691	7.97501815683939	8.10361636816666	0.0539711761100753	0.7375522992001	0.896392006995728
Merged-chr18-83828157-1	chr18	83828057	83828257	+	1000.0	f0_balb.idr	Intergenic	Intergenic	258405.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	5.33081746373264	5.3541858554666	4.83828152288274	4.73409347290893	5.13170254802116	5.09269083330539	5.22103476547049	4.95007214104738	0.0410782238169381	0.904590526295851	0.964559678221358
Merged-chr19-28917992-4	chr19	28917894	28918094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45926.0	NM_028922	74411.0	Mm.441887	NM_028922	ENSMUSG00000040105	Plpp6	4932443D16Rik|Ppapdc2	phospholipid phosphatase 6	protein-coding	7.35192421888334	7.93620650850044	7.60448386779727	7.68331098012183	8.28593209343699	8.19704603862014	8.15142032206874	7.81616098670466	0.597978745334537	0.00248168358291556	0.0276130281377713
Merged-chr5-120522862-3	chr5	120522758	120522958	+	697.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 8 of 13)	intron (NM_001177595, intron 8 of 13)	11666.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	3.03258902469885	3.4089795758454	3.16791404317432	3.05431567125323	3.48109215315387	3.40439298433422	3.53863936894999	3.40085590364313	1.03787524788285	0.0517113009663662	0.236370324395388
Merged-chr1-152602363-2	chr1	152602263	152602463	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	22854.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	3.40152301911396	3.30099677744533	3.19229007307037	2.76166070477609	3.19988827327176	3.247281312662	2.93280825406121	2.79622953173278	-0.490199673662207	0.45311049479992	0.737254878374332
Merged-chr4-147927868-4	chr4	147927777	147927977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011122, intron 6 of 18)	intron (NM_011122, intron 6 of 18)	8899.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	6.52137566607471	6.19776280363278	6.23248680757675	6.47402843855442	6.41485204696786	6.63197833030702	6.80112008588078	6.45141795647833	0.30573259664594	0.180515375709347	0.476893733388927
Merged-chr2-18392812-4	chr2	18392669	18392869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007869)	promoter-TSS (NM_007869)	61.0	NM_001190817	13418.0	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	7.49910162003651	7.38394223297653	7.53657640264896	7.72750583698477	7.50125753929748	7.29452532014006	7.44491708181603	7.29671102437085	-0.211935916577862	0.248757299404055	0.560006825677818
Merged-chr11-75171737-4	chr11	75171628	75171828	+	982.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1473.0	NM_010430	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	4.90688309012943	4.99753061580334	4.72005067810117	4.51552281892831	5.19507634835588	5.00960791139127	4.95130354322647	4.54473294707985	0.339505788419928	0.347614141834576	0.655546119710951
Merged-chr18-80455730-4	chr18	80455627	80455827	+	845.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 5 of 12)	intron (NM_026295, intron 5 of 12)	13940.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	3.86985225746152	3.77113383814353	3.43442581820963	3.91730608721349	4.52044982701088	4.09675784621792	4.13695994908896	4.06521488707139	1.20363854125471	0.0108660570900861	0.0837957830569053
Merged-chr7-81843921-2	chr7	81843808	81844008	+	821.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-14477.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	2.80864827394263	2.41574075672919	2.54528573610024	2.56478370613455	2.6314536941317	2.85648121655528	2.79798864850418	2.92149297177738	1.03993567967678	0.118435153086128	0.380763132859871
Merged-chr8-120529375-3	chr8	120529317	120529517	+	826.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	L1MB5|LINE|L1	-6440.0	NM_001145897	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	3.47020521702228	3.24293495899062	3.71368967326301	3.57416192583599	3.17991210380436	3.58677345315801	3.28729159833256	3.16947630328028	-0.701456508889195	0.203388380313594	0.506170662223812
Merged-chr17-71286927-3	chr17	71286794	71286994	+	832.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	24117.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	3.75725706352116	3.69366282346705	3.89914750463479	3.58331870763951	3.54383272082333	4.10948809535156	3.20201368537304	3.47963490305321	-0.335510774286917	0.542488885909925	0.793836939479926
Merged-chr16-57549229-4	chr16	57549136	57549336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177871)	promoter-TSS (NM_001177871)	-6.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.98408983560766	7.23079093279227	6.55260082674545	6.89396966600093	6.94664470596856	7.30461278688202	7.16865975828193	6.83324618198288	0.182999488733135	0.422010394276336	0.714404497381328
Merged-chr7-30998235-4	chr7	30998155	30998355	+	847.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR22_Mus|LTR|ERVK	16334.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	4.2453970725009	4.02984942170298	4.15888616561255	4.07259164555474	4.20703618287131	3.72507089866019	4.30738652585321	4.20059171467427	0.0248378620603216	0.953771961005277	0.983547181850056
Merged-chr7-29171231-4	chr7	29171126	29171326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_182694, exon 2 of 3)	exon (NM_182694, exon 2 of 3)	1016.0	NM_182694	243897.0	Mm.389886	NM_182694	ENSMUSG00000031493	Ggn	AI593290	gametogenetin	protein-coding	5.5866294582992	6.36815249632598	5.46720349452747	5.39879330415542	6.22645461102807	5.97534534083108	6.011196802314	5.66706840313633	0.35371294627175	0.281883436659491	0.594019040707757
Merged-chr17-71011060-2	chr17	71010978	71011178	+	798.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	-8479.0	NM_010867	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	2.76229333421189	2.95304713023306	2.69047578673788	2.31492186198377	3.20286371479495	3.13172816488798	2.94694832117313	3.01624954842731	1.71467159990413	0.016773903789178	0.113515272394122
Merged-chr1-180428020-5	chr1	180427969	180428169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55435.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	6.27461949060569	5.84267053398618	5.91219468152373	5.25433297464006	5.8045276252662	6.01913424229307	5.66578655268291	5.86278610131963	-0.0205256357248084	0.947752993533857	0.981348536548879
Merged-chr18-12941812-4	chr18	12941738	12941938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207530)	promoter-TSS (NM_207530)	3.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	8.03142274330714	8.10247503590935	8.11668099752144	8.05854075160312	8.06093501431497	8.11309342392243	8.07812801465626	8.07326743725235	0.00458304576072333	0.975713870390262	0.991347073148764
Merged-chr15-11765106-4	chr15	11765024	11765224	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	140550.0	NM_008728	18162.0	Mm.25259	NM_008728	ENSMUSG00000022206	Npr3	ANP-C|ANPR-C|EF-2|NPR-C|lgj|stri	natriuretic peptide receptor 3	protein-coding	4.87498420945426	5.35013161238418	6.13238576422593	5.47958879176336	5.35568106229248	5.30401005897703	5.95806320107147	5.68599187792778	0.111845888074569	0.764413456503495	0.907653311654861
Merged-chr15-99105659-4	chr15	99105623	99105823	+	878.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6239.0	NM_176835	72778.0	Mm.30544	NM_176835	ENSMUSG00000038009	Dnajc22	2810451A06Rik|AI506245	DnaJ heat shock protein family (Hsp40) member C22	protein-coding	3.12662940446294	3.41847616601884	2.91333294057965	2.74794318535201	3.55253303119529	3.54043149358413	3.60063483695661	3.18985603799675	1.49064376301398	0.0146859812128499	0.103283613946195
Merged-chr11-20193241-4	chr11	20193153	20193353	+	993.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8159.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	5.38328964819683	4.8260697726128	5.11902730796998	5.19644188143058	5.28377503618781	4.96341102702815	5.33045146258615	4.97727717548948	0.0209652602460751	0.948315752691182	0.981388084353081
Merged-chr19-53600069-4	chr19	53600059	53600259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007790)	promoter-TSS (NM_007790)	-237.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	8.10637751728401	8.24338617701878	7.96694737482456	7.75093480263993	8.07864218115007	8.47883954455095	8.20672277078179	8.15201353837732	0.270351395357313	0.14826243318632	0.430022074559677
Merged-chr11-117306859-4	chr11	117306743	117306943	+	797.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-24872.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	4.66461000155728	3.95398247101924	4.06723041189244	4.18469582406841	3.9274188000822	4.19295050267789	4.32107356600715	4.29669709811044	-0.132994313743906	0.763017957611954	0.907045125264112
Merged-chr3-89861327-4	chr3	89861232	89861432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29962.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	7.70922890310774	7.80416935506205	7.4657019622537	7.45809614038124	7.29942632995398	7.77998657538403	7.67288509581777	7.4701623355192	-0.069477909261463	0.725220022989376	0.890775427374647
Merged-chr12-87147583-4	chr12	87147480	87147680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010363)	promoter-TSS (NM_010363)	-127.0	NM_001252556	14874.0	Mm.29652	NM_010363	ENSMUSG00000021033	Gstz1	MAAI	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	protein-coding	8.42875270613092	8.35123123650224	8.50444916849632	8.42178253609989	8.28231039158586	8.43833473200821	8.47474499831545	8.30126838451045	-0.0664675410805504	0.658871974738804	0.858050748714077
Merged-chr3-82357980-4	chr3	82357902	82358102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081230)	promoter-TSS (NM_001081230)	-70.0	NM_001081230	213582.0	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	7.97369903280697	8.0797941816784	7.88825487258288	8.21902758482415	6.98649915829449	7.28729694393334	7.11019948786339	7.09020435340422	-1.2424273300924	7.63322014953211e-12	6.98361152986563e-10
Merged-chr19-44408790-4	chr19	44408702	44408902	+	934.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-1093.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	3.90084223129395	4.46107703096057	4.05857928501434	4.11149093242863	4.3651549052499	4.02099626212268	4.22545574267254	4.32506629426741	0.236147557088008	0.576823896433098	0.813789860645106
Merged-chr3-28053292-4	chr3	28053202	28053402	+	809.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 11 of 25)	L1MD2|LINE|L1	69131.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	4.40731428241256	3.84911502397728	4.28621223302956	3.95471957743531	4.36724348441495	4.37092263726297	3.7567363931037	4.44317121643645	0.317046403469571	0.489905578763223	0.761966459176932
Merged-chr5-110770823-4	chr5	110770717	110770917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173066)	promoter-TSS (NM_173066)	-100.0	NM_173066	75560.0	Mm.270487	NM_029337	ENSMUSG00000029505	Ep400	1700020J09Rik|AU023439|mDomino|mKIAA1498|p400	E1A binding protein p400	protein-coding	9.02390461017023	9.38759949314735	8.9179187065846	8.99759136194364	9.18931693006935	9.46518579363022	9.37451008665672	9.05812186374672	0.228277213879391	0.189203791162147	0.488066531391588
Merged-chr13-19843581-3	chr13	19843489	19843689	+	954.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19332.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	4.76187955381456	4.7685506294427	4.42104954121049	4.71633412083797	4.75658701034709	4.20102506017521	4.26491905373664	3.89141912387322	-0.771611673479483	0.0802032147935808	0.306923904612488
Merged-chr1-153754844-3	chr1	153754738	153754938	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011882, exon 4 of 9)	exon (NM_011882, exon 4 of 9)	5412.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	3.44828947031388	3.54527050328303	3.33473411707757	3.50839295345438	3.61940745840792	3.25208750306047	3.3232023764945	3.55132958472328	-0.039475378066405	0.939351972014485	0.978065281293421
Merged-chr6-13839326-4	chr6	13839234	13839434	+	930.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145066, intron 1 of 3)	intron (NM_145066, intron 1 of 3)	608.0	NM_001330666	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	4.60874494263168	4.63819680156124	4.34935832716865	4.71173401046309	4.60396234722442	4.37828313318114	4.98405583912365	4.39380356916753	0.0518426908329702	0.892426538483266	0.959706727442632
Merged-chr2-60810804-4	chr2	60810692	60810892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	70646.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	6.49483695979372	6.30675582384269	6.65064542347692	7.05072693922037	5.98834591275187	6.02538606895086	6.6452234601001	6.31505148880684	-0.590470918202793	0.033628137678741	0.180623091747291
Merged-chr11-21240971-3	chr11	21240866	21241066	+	767.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290628, intron 1 of 22)	intron (NM_001290628, intron 1 of 22)	1934.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	3.34806100116295	3.98358429834266	3.4146815551643	3.21875376454427	4.21163179614567	3.53245132617429	3.87966737992526	3.64937193030002	0.960992322252948	0.0870587621271275	0.321775658398941
Merged-chr9-111571893-2	chr9	111571797	111571997	+	786.5	f0_balb.idr|f1_balb.idr	intron (NM_016853, intron 10 of 10)	ORR1E|LTR|ERVL-MaLR	118451.0	NM_016853	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	4.35120195406117	3.86879605195051	3.88906862647318	4.07273331759908	3.77031602122057	3.90369030148021	3.82175738517988	3.7250394550651	-0.715270340013787	0.114417736944633	0.374116408561811
Merged-chr2-90474986-4	chr2	90474884	90475084	+	989.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001135657, exon 2 of 26)	exon (NM_001135657, exon 2 of 26)	4190.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.46857325863546	4.56292581978019	4.00269910577173	4.51571189025148	4.6474876135904	5.13712594571746	4.78919939278611	4.3282446739587	0.740380850076184	0.0736266655194695	0.292334045016474
Merged-chr4-117908446-3	chr4	117908307	117908507	+	968.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146152, intron 2 of 19)	intron (NM_146152, intron 2 of 19)	6592.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	3.81248674145166	3.4366250688643	3.50699906794917	3.93325347333766	3.45163499858204	3.50048199742871	3.49398017133583	3.71679875408223	-0.500921835469553	0.329088047518161	0.640336735854547
Merged-chr17-34605088-3	chr17	34604985	34605185	+	853.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163379)	promoter-TSS (NM_001163379)	-776.0	NM_001163379	55979.0	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	3.7956932226692	3.72438841450523	3.84314170033445	3.23638551258778	3.82839694351802	3.65009363354434	3.33336605111775	3.74535014694559	-0.0229649313614947	0.96588546461098	0.988022131369328
Merged-chr17-28622493-4	chr17	28622407	28622607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016795)	promoter-TSS (NM_016795)	14.0	NM_016795	20815.0	Mm.15252	NM_016795	ENSMUSG00000004865	Srpk1	AU017960	serine/arginine-rich protein specific kinase 1	protein-coding	6.28042769751879	5.91563363123148	5.80591188692612	5.92741545602898	6.34258109700576	6.00734704870425	5.84919903537493	5.6972689952294	0.03196684324493	0.907614377216098	0.96572638861679
Merged-chr1-87851424-3	chr1	87851295	87851495	+	879.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-1892.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	3.30927716119816	3.56290663334707	3.42500207737773	3.33049700717148	3.55064107324515	3.4818430444826	3.35617107809098	3.30805444455828	0.0855608282663476	0.867278093489766	0.950313421774078
Merged-chr7-104287775-5	chr7	104287684	104287884	+	733.853333	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310602, intron 1 of 7)	intron (NM_001310602, intron 1 of 7)	322.0	NM_001310602	667823.0	Mm.482375	NM_001310602	ENSMUSG00000060441	Trim5	EG667823|Gm8833	tripartite motif-containing 5	protein-coding	2.08222342543644	2.04155615705351	2.08237405680716	1.83490765108534	2.70062487819556	2.82639678557898	2.58220545165144	2.59238048300168	6.61800104943523	4.48486970698715e-10	3.06950520070806e-08
Merged-chr2-18903841-4	chr2	18903701	18903901	+	960.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355149, intron 3 of 10)	intron (NM_001355149, intron 3 of 10)	94320.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	4.73769667617251	4.31620928720016	4.77379198955197	4.82273768068071	4.65663295291421	4.44720647589967	4.52468642192097	4.62316376107779	-0.247876441469407	0.500537119845165	0.768850577358824
Merged-chr14-75045334-4	chr14	75045245	75045445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198642, intron 9 of 13)	intron (NM_198642, intron 9 of 13)	29318.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	7.0360128879983	6.93188973650953	7.00033966662566	7.06173689300125	6.91367690377812	6.91505246628891	7.23257933399816	6.89139484249834	-0.0229101694760031	0.906459123661138	0.965349101655937
Merged-chr10-111031644-4	chr10	111031547	111031747	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21581.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	4.92135858054521	4.67060221754845	5.0542113178359	5.04991490989408	4.60516263136535	5.05981636204998	4.71315790346419	4.9865195722029	-0.189365609147209	0.58305303473695	0.816904287158464
Merged-chr8-86891721-3	chr8	86891621	86891821	+	651.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	-6463.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	4.07865624301628	4.03605173357837	3.9527963571933	3.482703978435	3.53060891001586	3.5260637758494	3.63960679493657	3.65200838634379	-0.951121889902892	0.0618837905705977	0.263185794468412
Merged-chr18-12761316-4	chr18	12761218	12761418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252490, intron 10 of 13)	intron (NM_001252490, intron 10 of 13)	19963.0	NM_027687	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	5.86596576842881	5.2380957752297	5.08176635168168	5.84766576075674	5.17952687697336	5.2244958946068	5.49338568061049	5.46319687136794	-0.389948716828416	0.24303256133022	0.553987597504451
Merged-chr7-67985216-4	chr7	67985118	67985318	+	979.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 1 of 20)	L1MB3|LINE|L1	32961.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	5.94604040221185	5.64430746639798	5.46747570221455	5.88271858985309	4.99824100835709	4.88134006955943	5.26223977543946	5.31640699434884	-1.11993514019469	0.000227910532434899	0.00405358415496843
Merged-chr8-84846996-4	chr8	84846901	84847101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007591)	promoter-TSS (NM_007591)	-70.0	NM_007591	12317.0	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	8.82131749498582	8.96856524591687	8.76937002566248	8.75827492156379	9.06245206579711	9.17317110518187	8.9926979666924	8.63602866419229	0.18726576224583	0.264736979902454	0.576566406596513
Merged-chr4-44012605-4	chr4	44012510	44012710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290470)	promoter-TSS (NM_001290470)	-33.0	NM_016760	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	7.03208840777882	6.9494512851554	6.80585942164365	6.96724934194207	7.07747783199421	6.99783503565585	7.36475384902491	7.016066218329	0.247839836407544	0.206799630277759	0.510809505458117
Merged-chr6-16964113-4	chr6	16964035	16964235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65694.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	6.45063592799999	6.37937986092902	6.61004534876988	6.89760072553594	6.33881542728211	6.04158296365241	6.23852763167434	6.26614190696159	-0.568930106905923	0.0179721191917678	0.119043129718113
Merged-chr7-68157619-4	chr7	68157518	68157718	+	961.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	106615.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	4.74078857632797	4.70304020352052	4.38435706215077	4.92421810791222	5.01007905684812	4.83665331506898	5.114632946554	4.85045504141731	0.484164566228737	0.167076748714802	0.4585269855325
Merged-chr7-30325592-4	chr7	30325513	30325713	+	881.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3238.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	4.09569646695021	4.68532201848366	4.43086356313727	4.12180002292549	4.47777709028122	4.60314431689076	4.45164470289016	4.46944081319687	0.350367215738	0.377074875299477	0.679712628179944
Merged-chr8-94340995-4	chr8	94340901	94341101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 11 of 24)	intron (NM_019415, intron 11 of 24)	11793.0	NM_001205311	20497.0	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	5.53926415682829	5.81698454803012	5.54021935967223	5.85245353918601	5.77560821797007	5.59828437687279	5.76883204419565	5.8622506936858	0.074190511549252	0.778679786969211	0.913781420202775
Merged-chr11-29548213-4	chr11	29548097	29548297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024277)	promoter-TSS (NM_024277)	-157.0	NM_001033865	78294.0	Mm.180003	NM_024277	ENSMUSG00000020460	Rps27a	0610006J14Rik|Uba52|Ubb|Ubc	ribosomal protein S27A	protein-coding	6.2784929350253	6.13187584839635	6.141808165577	6.13696903719517	6.45232552193712	6.16493886126502	6.48340070822688	6.32980126693901	0.302263044787317	0.175841548314367	0.470658653309832
Merged-chr16-11036265-4	chr16	11036129	11036329	+	952.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27331.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	4.22767633002218	4.63000880263409	4.17704732861517	4.21182459031301	4.59806054315133	4.45466718983151	4.55728549751014	4.84990000422325	0.681487806046452	0.0753454504725589	0.296446510374566
Merged-chr16-58507870-4	chr16	58507756	58507956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	15570.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	4.73987805877619	4.71394887122723	5.16300775589158	4.76995388187165	4.93732751044995	5.36340197470587	4.87393626005537	5.21783208091186	0.497763505207477	0.141192814519972	0.418005549692302
Merged-chr5-136568972-4	chr5	136568863	136569063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-11653	-1473.0	NM_001291238	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	5.43100073804487	5.4496675134375	5.01971466958276	5.21422325240997	5.30901983583812	5.1975679984194	5.50771152155172	5.19080777907714	0.03989416219818	0.894123627945808	0.960481560907683
Merged-chr1-167308639-4	chr1	167308498	167308698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039483)	promoter-TSS (NM_001039483)	-72.0	NM_001039483	68944.0	Mm.330045	NM_026881	ENSMUSG00000052428	Tmco1	1190006A08Rik|4930403O06Rik|AA109065|AU022572|ESTM39	transmembrane and coiled-coil domains 1	protein-coding	7.41132069337548	7.55730628359008	7.48006456005576	7.34699094833755	7.40722998094107	7.72996302994118	7.56763791211727	7.4173166141702	0.113060503925022	0.530591331515452	0.786664175174204
Merged-chr18-35063525-4	chr18	35063426	35063626	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-55386.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	4.19570164257264	4.43253479887891	4.43531761542294	4.81162502326286	4.14211340734047	4.21500253773935	4.78731072498016	4.96009509154923	0.159782311521408	0.720134582593936	0.888146020973313
Merged-chr9-82829937-4	chr9	82829873	82830073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_022986, exon 1 of 4)	5' UTR (NM_022986, exon 1 of 4)	167.0	NM_001168240	65099.0	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	7.23252407596199	7.70889178083289	7.06809164638879	7.10257015290412	7.30565569090315	7.44374424711157	7.31356393241317	7.4514493993649	0.100794265361294	0.636203649159649	0.846064411527807
Merged-chr15-27616372-4	chr15	27616301	27616501	+	943.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001013792, exon 4 of 7)	exon (NM_001013792, exon 4 of 7)	14292.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	4.97596044444121	4.72000993374604	5.71707513607839	5.52207384367196	4.7866643137247	4.74183463387121	5.02204603076738	4.97341955399534	-0.792015462718019	0.0357134109326365	0.187703143863446
Merged-chr15-83408387-3	chr15	83408264	83408464	+	924.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358643, intron 1 of 9)	MTEb|LTR|ERVL-MaLR	24486.0	NM_011862	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	4.63030785303339	4.53618548913911	4.59725018179659	4.27182979301295	4.11823375303216	3.94011380058863	3.92099555924587	3.99019353268092	-1.27365947039123	0.00262147680422966	0.0287687476793498
Merged-chr6-39206136-4	chr6	39205998	39206198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033430, intron 1 of 19)	CpG	675.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	4.80003565624672	5.06880566854549	4.64129236581835	4.85741507888588	4.9012630590032	4.81651042483235	4.77830408725771	5.00532222715287	0.0488651960178665	0.88270156008488	0.955814918609989
Merged-chr8-56315376-4	chr8	56315274	56315474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 4 of 6)	intron (NM_008278, intron 4 of 6)	20822.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	6.09882555835564	6.0052749063827	6.1973471454927	6.52562630439782	5.81968800149784	5.63658579138807	6.06865586507634	5.96777256189333	-0.556771161421685	0.0348148005210746	0.184697249024869
Merged-chr1-36471485-4	chr1	36471378	36471578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033570)	promoter-TSS (NM_033570)	-119.0	NM_033570	94220.0	Mm.422638	NM_033570	ENSMUSG00000037408	Cnnm4	5430430O18Rik|Acdp4	cyclin M4	protein-coding	7.6524552407419	7.73172408624681	7.90862334137212	7.54048276118545	7.70563805347786	8.07188247716531	7.91159350524931	7.50338814293619	0.134933061962247	0.489600165927117	0.761898780291349
Merged-chr12-99993700-4	chr12	99993596	99993796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	MIR|SINE|MIR	29197.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	7.62633622461175	7.48681276809492	7.88843425005486	7.85886994467011	7.00610922600126	6.86540119590285	7.46871839284922	7.36577665059048	-0.707056775416307	0.000970577779423435	0.0131190193242652
Merged-chr18-52463691-4	chr18	52463554	52463754	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2039.0	NM_026040	67222.0	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding	5.16136200647296	5.30540262511358	5.12169879602091	5.0186309652264	6.70853455583979	6.4397617704842	6.06666721580374	6.70292960508491	2.188328086487	8.47938878757029e-16	1.54946948835077e-13
Merged-chr3-38102672-4	chr3	38102554	38102754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105465.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	6.6129274746157	6.92315203385544	6.97331506536009	6.18402001824122	6.39065174313607	6.8054993110108	6.16621356163688	6.35408829381842	-0.366527063290088	0.181801605336895	0.478446672285694
Merged-chr3-8983944-4	chr3	8983839	8984039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-19793.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	8.6226726848578	8.47159303151781	8.92655502018522	8.5608519651644	8.52290562144189	8.40769652793955	8.7166466316883	8.5054733612919	-0.138099018845136	0.417435417318984	0.711253993281818
Merged-chr4-155487948-4	chr4	155487841	155488041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3420.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	5.6649980286051	5.35718601532694	5.1657009020931	5.25677645471734	5.59261772042608	5.23624961458647	5.10716404349827	5.56770486821237	0.0604917963022665	0.845187544882466	0.94145012217632
Merged-chr8-115506837-4	chr8	115506733	115506933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	200061.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	6.10136631575388	6.07929993073654	5.6032350675372	6.13467946213781	5.96094222046638	6.06431715124826	5.78766841754688	5.81303781941479	-0.152729654826891	0.557226776081777	0.802469240778635
Merged-chr14-66232423-1	chr14	66232323	66232523	+	717.0	f0_balb.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-18599.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	4.46953910947113	4.54412006049219	4.1461043393792	4.00929063852293	4.3490394036465	4.60152452978478	4.52809332480376	4.65697159462421	0.547037880453725	0.169833337391698	0.462631730662216
Merged-chr2-66143465-4	chr2	66143381	66143581	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18688.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	5.65848525940007	5.45707987047632	5.27750421734527	5.87290569092573	5.32516119698858	5.45338629925522	5.00896572357855	5.1399102505031	-0.632729786228471	0.042255750811992	0.208512357048187
Merged-chr9-37208224-4	chr9	37208131	37208331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025464)	promoter-TSS (NM_025464)	8.0	NM_025464	66279.0	Mm.41451	NM_025464	ENSMUSG00000032121	Tmem218	1810021J13Rik|AV004931	transmembrane protein 218	protein-coding	9.11322609887384	9.01574056619098	9.14697667835517	9.16993921086887	9.10700644007457	9.15385587795854	9.35945612759718	8.9559976308839	0.0474264604189139	0.754315140235576	0.903245265587213
Merged-chr5-3501880-4	chr5	3501774	3501974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-41959.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	8.39952505999273	8.58086780080276	8.45642521627073	8.17973948613955	8.47963796748474	8.40730663095544	8.08601933948372	7.90918243668272	-0.206961871353218	0.283439299354943	0.595517028419196
Merged-chr19-41987192-4	chr19	41987106	41987306	+	734.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	5443.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	3.47580702204188	3.53181001333963	3.36182457839685	3.67576832211583	3.62221796528277	3.34718410115462	3.28974297955823	3.57925910889225	-0.173245991699847	0.738795851848388	0.89698683073579
Merged-chr9-41168775-3	chr9	41168667	41168867	+	729.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-10705.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	3.69069687575596	3.41300464418677	3.32690677481127	3.75276760738324	3.43137316484455	3.37699900856673	3.25449241513188	3.26377856361967	-0.792600363903326	0.139882207644025	0.415919589765617
Merged-chr7-98535366-3	chr7	98535252	98535452	+	946.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41130.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	3.3821145767486	3.85314423116061	3.38252236838151	3.10460944676792	3.96291598429602	3.94472519495102	3.43336700849299	3.81934189702693	1.08069909997941	0.0493171009423581	0.229734419370164
Merged-chr9-72985482-4	chr9	72985393	72985593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114328)	promoter-TSS (NM_001114328)	-11.0	NM_001286545	72278.0	Mm.268475	NM_028181	ENSMUSG00000034563	Ccpg1	1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e	cell cycle progression 1	protein-coding	8.26902930094988	8.33894976303181	8.33286509287266	8.4413468616858	8.44513878366374	8.42454549654577	8.72833864840364	8.36561269555541	0.186556637553704	0.245665893238184	0.556798363789228
Merged-chr5-90902728-1	chr5	90902628	90902828	+	602.0	f1_balb.idr	Intergenic	Intergenic	-1171.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	3.21081515727181	3.41427137549084	3.21123461484297	2.79340199993502	3.43324388927049	3.06186033948119	3.3103255236129	3.20953816039545	0.34774709792105	0.563970598001583	0.806551268713802
Merged-chr13-67081441-4	chr13	67081335	67081535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012449, intron 1 of 2)	intron (NM_001012449, intron 1 of 2)	110.0	NM_001012448	432769.0	Mm.458849	NM_001012325	ENSMUSG00000058883	Zfp708	Rslcan11	zinc finger protein 708	protein-coding	7.06581943159	7.36754350295462	7.83658836977387	7.61470597752363	7.30310265132939	7.48295572203265	7.64036008982402	7.8170131253315	0.0871035181148802	0.698949986710493	0.878561428415187
Merged-chr15-41603498-4	chr15	41603386	41603586	+	967.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	154383.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	4.7863178153464	5.08760013841186	5.46780725935504	5.57282269817331	4.74179692801313	5.23177357613457	4.99677737094329	5.27508138529504	-0.388463478117209	0.278765529219538	0.591009603347969
Merged-chr19-5488431-4	chr19	5488341	5488541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153768)	promoter-TSS (NR_153768)	-62.0	NR_153769	71711.0	Mm.27697	NM_027877	ENSMUSG00000024906	Mus81	1200008A18Rik|AI182501|AW045863	MUS81 structure-specific endonuclease subunit	protein-coding	7.24305642447507	7.48748753865612	7.26627299716807	6.95673579496345	7.53829592688252	7.67139182086937	7.26210438595849	7.51626184374172	0.351838638581258	0.0842937668581717	0.315882275679571
Merged-chr4-97929178-4	chr4	97929087	97929287	+	939.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	151561.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	3.89783552946179	4.25375542841596	4.62313826286864	4.34849016378331	4.26911355864356	3.76930958056717	4.39090872897916	3.95211292421383	-0.451264804094848	0.332845340618267	0.643767713157944
Merged-chr8-11464365-4	chr8	11464243	11464443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-13586.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	8.78752354470261	9.05384443115491	9.37939066620346	9.14287696823551	9.04368773260593	9.32132732786013	9.28464568845593	9.11485658434687	0.105579595350376	0.541312361282932	0.793203558709177
Merged-chr13-113617757-3	chr13	113617683	113617883	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_130796, exon 1 of 2)	exon (NM_130796, exon 1 of 2)	781.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	5.40014281580937	5.97926203492206	6.0246037950546	5.22756901941177	5.70014646418341	5.6089576038087	5.57306223127677	5.33389925373851	-0.218416905286857	0.500430522215066	0.768850577358824
Merged-chr13-67332516-4	chr13	67332429	67332629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177622)	promoter-TSS (NM_177622)	31.0	NM_177622	218314.0	Mm.289695	NM_177622	ENSMUSG00000057842	Zfp595	A230042K10Rik|Rslcan23	zinc finger protein 595	protein-coding	7.7605757577614	7.76801862847492	7.45088576139439	7.54785002530345	8.11625420657709	7.91548824977183	7.95283850410091	7.56122763929135	0.352696676835886	0.0668553013126559	0.275770369270604
Merged-chr16-57534557-4	chr16	57534440	57534640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-14702.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	5.44207558179651	5.37048831949689	5.82187566773807	5.90738138455914	5.64843964704981	5.28982734032634	5.38634094512938	5.63008084380903	-0.279787005335295	0.348980787604148	0.656659180524365
Merged-chr17-87405745-4	chr17	87405603	87405803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029298, intron 5 of 6)	intron (NM_029298, intron 5 of 6)	22038.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	7.97919611988092	8.00876946093418	7.98051642549127	8.00954031000675	8.12423466824607	8.34568450160724	8.18215345645137	8.08846218961378	0.244280576195404	0.117920847882124	0.379892984408118
Merged-chr2-157131208-4	chr2	157131103	157131303	+	941.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139520, intron 1 of 16)	intron (NM_001139520, intron 1 of 16)	4019.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	3.85543016172008	3.33583848751265	3.51344225328009	3.32376830360692	3.52572960710773	3.44857476982099	3.44305004803774	3.8535264827392	0.202239547933121	0.701621346506268	0.879767652498371
Merged-chr7-19299454-3	chr7	19299366	19299566	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	8397.0	NM_001025364	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	3.68556134498697	3.35316145374167	3.24759070289153	3.01407592406082	3.585088250629	3.75878314030166	3.35887889373843	3.36992372236117	0.64108293709541	0.252067461041887	0.563413716737337
Merged-chr9-62374967-4	chr9	62374868	62375068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 5 of 6)	intron (NM_009672, intron 5 of 6)	33625.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	5.91806021837447	5.67615645151846	5.51347672549899	5.58998088535348	5.27767867433931	5.47785920701232	5.71516746371148	5.56465228559511	-0.284759766638127	0.311191502048075	0.623234990348648
Merged-chr4-132274332-4	chr4	132274240	132274440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025579)	promoter-TSS (NM_025579)	-35.0	NM_025579	66464.0	Mm.331926	NM_025579	ENSMUSG00000028899	Taf12	20kDa|2810422D08Rik|AW557038|Taf2J	TATA-box binding protein associated factor 12	protein-coding	6.57565800196808	6.75466024246293	6.39966732523596	6.45094138053009	6.99372063595235	6.70376329244655	6.93560483418059	7.05893946961525	0.546472735746798	0.00940380585025589	0.0755563265171424
Merged-chr18-12221827-1	chr18	12221727	12221927	+	934.0	f1_balb.idr	exon (NM_008720, exon 3 of 25)	exon (NM_008720, exon 3 of 25)	14559.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	2.07742737822345	2.0329747765043	1.99785506965937	2.25420161254307	2.14439939658427	2.46178059558486	2.46546737005093	2.35533753952545	1.59034574740464	0.0609523429920906	0.260925815760845
Merged-chr4-138007173-4	chr4	138007126	138007326	+	885.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355699, intron 1 of 32)	B2_Mm2|SINE|B2	9401.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	3.97325579086827	3.94251401708494	3.82026421876532	4.02300913338644	3.93772556258956	3.88346419481715	4.13468427493135	4.10847874512486	0.189959071274901	0.655000733767922	0.855847585660705
Merged-chr1-160441360-4	chr1	160441248	160441448	+	941.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013862, intron 17 of 20)	intron (NM_013862, intron 17 of 20)	-89777.0	NM_001038621	29809.0	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	4.89473191736342	4.61099340840005	4.70263823570254	5.25080051426809	4.65559617559658	4.91972558214453	5.26485292039927	4.89225738208825	0.0751188386345011	0.840990409514147	0.939509634447265
Merged-chr13-73971275-3	chr13	73971145	73971345	+	828.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153830, intron 2 of 9)	intron (NR_153830, intron 2 of 9)	7394.0	NM_027704	71164.0	Mm.66995	NM_027704	ENSMUSG00000069189	Zdhhc11	4933421L13Rik|DHHC-11|Zdhhc20	zinc finger, DHHC domain containing 11	protein-coding	4.2992529760182	3.67266401414489	3.81620041922562	4.19895894007203	3.48829737437331	4.04216919516681	3.63198720185069	4.0116355397324	-0.603318256766655	0.235402451548749	0.545415549584598
Merged-chr4-140905495-3	chr4	140905405	140905605	+	848.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008812)	promoter-TSS (NM_008812)	-855.0	NM_008812	18600.0	Mm.2296	NM_008812	ENSMUSG00000028927	Padi2	Pdi|Pdi2|mKIAA0994	peptidyl arginine deiminase, type II	protein-coding	2.95291018381684	3.05234484021756	2.95327570640156	2.79966397548077	2.9634086676175	2.78702496052715	2.81546351721537	3.27523731870441	0.163274525875027	0.791931876535286	0.919401124049459
Merged-chr13-20494235-4	chr13	20494141	20494341	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198093, intron 1 of 6)	intron (NM_198093, intron 1 of 6)	21251.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.42849966521663	5.00979451448096	5.31111026028249	5.54762842298714	5.47616644334491	5.2884968942957	5.63208157662936	5.53371763398432	0.240671407993355	0.420464315341668	0.713274332060183
Merged-chr5-114639542-4	chr5	114639456	114639656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 3 of 15)	intron (NM_022017, intron 3 of 15)	18865.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	5.44634940742451	5.85667912819699	5.50480831743937	5.49417412833316	5.59250595142619	5.67967476530637	5.58425164187196	5.4137657085768	-0.0233113523595683	0.932657419232474	0.975722604390767
Merged-chr2-130728238-4	chr2	130728117	130728317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029432, intron 28 of 36)	intron (NM_029432, intron 28 of 36)	-30698.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	5.9959722525246	6.34363655821888	6.24022683332034	6.18539653538227	6.00556898165547	5.98238700003489	5.87437353491149	6.21721053655112	-0.269333455167672	0.259896479644811	0.571684145019647
Merged-chr10-118716523-4	chr10	118716418	118716618	+	886.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152385.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	4.34108833711269	4.9671803561656	4.46765570657519	4.13791725670153	4.33208255116002	4.51579742528473	4.02998195675311	3.92940057237418	-0.683384797451013	0.135901737716159	0.410304962203023
Merged-chr18-69544047-4	chr18	69543950	69544150	+	893.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 6 of 19)	intron (NM_001361128, intron 6 of 19)	197890.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	4.13611547994739	4.43873516555509	4.45687256673722	4.70390004183081	4.27037557588269	4.36333065674286	4.35367779991413	4.41293943289543	-0.282192905368383	0.474141950875426	0.751607118426792
Merged-chr7-132932207-4	chr7	132932121	132932321	+	878.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207302, intron 1 of 9)	intron (NM_207302, intron 1 of 9)	1079.0	NM_001362198	360216.0	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	4.19955084058775	4.13908629811747	4.06287329671709	4.17593255513822	4.04304975026648	3.91606994051243	4.22363170482653	4.15349708147105	-0.15283190728263	0.707494144047776	0.882483967981585
Merged-chr4-145257515-4	chr4	145257415	145257615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-10645.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	5.59226251182725	5.62516979550221	5.3098928865227	5.39684019530669	5.48994097463214	5.76594453450823	5.40381263650687	5.17276273018148	-0.0174341816779979	0.952414626831966	0.983110341498473
Merged-chr9-83807771-3	chr9	83807670	83807870	+	753.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1465.0	NM_148941	83603.0	Mm.83949	NM_148941	ENSMUSG00000032262	Elovl4	-	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	protein-coding	3.05945549258445	2.66024214639774	3.23148211155239	3.16721227400573	3.12551571009997	3.10648565943106	3.16424943351535	3.17502776620085	0.363074406043793	0.560098564348061	0.804203083823139
Merged-chr11-100721405-4	chr11	100721281	100721481	+	869.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	7531.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	3.62576745993043	4.00304639010841	3.958035422045	3.93421106227199	4.02046920745517	4.2649956479593	3.73207481802128	4.0942261916977	0.397694031468572	0.378175597644848	0.680783026422929
Merged-chr2-90579684-4	chr2	90579592	90579792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	CpG	955.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	5.85665762891755	7.19592037681839	6.71548364037501	5.56386700723498	6.61167913203032	6.86354454498219	6.33372271195383	6.14360805438635	0.0132466192432538	0.981506631596948	0.993411548082347
Merged-chr8-106198971-3	chr8	106198873	106199073	+	848.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357382)	TTS (NM_001357382)	11960.0	NM_001007567	66432.0	Mm.269029	NM_001007567	ENSMUSG00000033106	Slc7a6os	2010007L18Rik|2400002F02Rik	solute carrier family 7, member 6 opposite strand	protein-coding	3.89486955407703	3.56722261095638	3.61071292917686	3.5431362583056	3.50635376567784	3.72829181503494	3.42812049339457	3.49782841305813	-0.359435986400122	0.467752759375573	0.747125948872246
Merged-chr3-129437861-3	chr3	129437765	129437965	+	961.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4192.0	NR_033594	435755.0	Mm.430561	NR_033594	ENSMUSG00000105712	Pou5f1-rs4	EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d	POU domain, class 5, transcription factor 1, related sequence 4	pseudo	3.53728696110108	3.26067592294194	3.68159392265829	3.6640858166153	3.47811784192058	3.15976961776774	3.243918486311	3.37371345037585	-0.770995061799692	0.158903261397006	0.446088552276769
Merged-chr2-35108941-1	chr2	35108841	35109041	+	810.0	f0_balb.idr	promoter-TSS (NM_012018)	promoter-TSS (NM_012018)	-551.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	3.40135592501147	3.51392954922022	3.40178750408443	3.64223616248674	3.67638351006156	3.32828040441101	3.20792679307794	3.50945220711754	-0.166206900789354	0.755089838734979	0.903607895612451
Merged-chr1-57983610-1	chr1	57983510	57983710	+	559.0	f0_balb.idr	Intergenic	Lx6|LINE|L1	-1730.0	NM_001177867	68549.0	Mm.32800	NM_199007	ENSMUSG00000026039	Sgo2a	1110007N04Rik|4932411A20Rik|5730576N04Rik|AU018846|AV008062|D1Ertd8e|Sgol2|Sgol2a|Tripin	shugoshin 2A	protein-coding	3.10020750964812	3.47594932508431	3.42467560750971	3.14585604850005	2.9980756724121	2.859168801637	2.89407821716355	3.21624346837622	-1.18972088537753	0.0534370243342405	0.241268249609065
Merged-chr12-103347165-1	chr12	103347065	103347265	+	943.0	f0_c57.idr	intron (NM_023049, intron 1 of 9)	intron (NM_023049, intron 1 of 9)	8836.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	5.12539086041307	4.26842733097907	4.79316477877865	5.12718703022566	5.09609051109803	4.85039340471223	5.01033376169592	4.49206926656212	0.0140493651871812	0.972224515761833	0.989985534139389
Merged-chr5-150891680-4	chr5	150891530	150891730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60977.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	5.04562718927383	4.93073842526893	5.19758131818997	4.76410154513627	4.99971054529732	4.52325125385432	4.922360098863	5.04302031350566	-0.170355241541086	0.62163959441962	0.837946907721623
Merged-chr1-74390110-3	chr1	74389991	74390191	+	852.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1518.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	3.57593617481904	3.29731142567335	3.52631820921047	3.34281915922236	3.4106094957636	3.21823510861615	3.6545401380281	3.23964717359923	-0.135548551037908	0.799527840717296	0.922592992759239
Merged-chr3-27182870-4	chr3	27182747	27182947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178772)	promoter-TSS (NM_178772)	-157.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	7.85852744343113	7.74477294922223	7.90383681009248	7.75369299793003	8.02231225707259	7.89529367155837	8.1589722809905	7.96171163490043	0.262014882381678	0.107532769679869	0.361609678518616
Merged-chr10-80101225-4	chr10	80101125	80101325	+	997.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359635)	promoter-TSS (NM_001359635)	-38.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	5.255942223883	5.66918979876582	5.07335514363635	5.46141672636306	6.09425966575296	5.62419055294403	5.61083429600341	5.80178231763239	0.697328314984614	0.0198110007668408	0.1272563147354
Merged-chr2-32138041-4	chr2	32137935	32138135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-13113.0	NM_172661	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	8.14701910426928	8.30724709457368	7.71566573529283	7.98524402988196	8.18868822393224	8.26987939834679	7.97500012914277	8.07406837553147	0.0956567478870033	0.608150072928113	0.8303806010247
Merged-chr14-20824762-4	chr14	20824656	20824856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-11906.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	5.45332377217661	5.20143612895564	5.17749887086305	5.26906708782053	5.63890207119721	5.32036882777149	5.50659973881458	5.60600195595601	0.447086594099973	0.111094856334813	0.368241630765374
Merged-chr8-73242248-4	chr8	73242136	73242336	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	111304.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	5.18972556594836	4.43092895250608	5.06163594231453	5.54037647567785	5.02231689373625	4.89491628195149	5.07007911441372	5.48535669365269	0.0156305004851566	0.968466554227935	0.988694268692349
Merged-chr1-64190953-4	chr1	64190856	64191056	+	922.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69567.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	4.31545150405532	4.43789923069893	4.26874589946838	4.5556677606467	4.19990868434756	4.57878142227346	4.50878012947254	4.7095368585613	0.209093830493429	0.590300844725282	0.820885490411269
Merged-chr4-8842976-4	chr4	8842874	8843074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 18 of 36)	L1MA5A|LINE|L1	91650.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	8.22789897876492	8.26094721276176	8.31910880599069	8.37570186346351	8.0139774988228	8.32878962774091	8.17289368111758	7.93711318471711	-0.232214932384726	0.159166189503341	0.446492086492405
Merged-chr3-83867115-3	chr3	83866981	83867181	+	880.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3A|LTR|ERVK	-25473.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	3.12931493366799	3.0563120551331	3.12976585891359	2.74943386427154	2.99906202185989	2.86542177637511	2.88477806393728	2.82709607231123	-0.509331635077361	0.414624246489255	0.70912924922228
Merged-chr7-19507440-7	chr7	19507323	19507523	+	840.261902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177692, exon 2 of 2)	exon (NM_177692, exon 2 of 2)	908.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	3.97608479279555	3.8450400450499	3.45808746256411	3.52743256293952	3.57863044364242	3.69753158511827	3.67601016511447	3.93085984531849	0.036268845697058	0.941484017777831	0.978922922650201
Merged-chr2-32737266-4	chr2	32737153	32737353	+	965.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027529, intron 2 of 2)	intron (NM_027529, intron 2 of 2)	3763.0	NM_027529	70730.0	Mm.401360	NM_027529	ENSMUSG00000009551	6330409D20Rik	AA517851	RIKEN cDNA 6330409D20 gene	protein-coding	4.94826819461213	5.28129637838988	4.94909366660621	4.99299738081193	4.7139737559847	4.57896308040846	4.9922608021602	5.01332232054627	-0.429654837357941	0.202152853329452	0.50461441050349
Merged-chr9-55512263-4	chr9	55512165	55512365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145615)	promoter-TSS (NM_145615)	-22.0	NM_145615	110842.0	Mm.290853	NM_145615	ENSMUSG00000032314	Etfa	2010200I21Rik|D9Ertd394e	electron transferring flavoprotein, alpha polypeptide	protein-coding	7.93342837964717	8.09746584308302	7.67047782218828	7.80678526496881	7.8661421857075	8.07666188023698	7.91047616463103	7.78084900410488	0.0320905890007208	0.856696041917291	0.946063986135646
Merged-chr5-106803296-2	chr5	106803196	106803396	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106466.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	2.49111051320933	2.47726016752359	2.41953667607161	2.2588452201887	2.47601173672079	2.7328680273767	2.78928877255374	2.68482439484069	1.44130229806541	0.0366185791324549	0.190476019005335
Merged-chr11-48874669-4	chr11	48874584	48874784	+	921.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3264.0	NM_008326	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	4.5636154828239	4.21997039749377	4.48575809189279	4.42001312726035	4.5093595118041	4.39276974951724	4.29356947346579	4.63522497211909	0.0963895318966464	0.797005564008012	0.921466077162776
Merged-chr1-88510024-4	chr1	88509919	88510119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008132)	promoter-TSS (NM_008132)	47.0	NM_008132	14659.0	Mm.5187	NM_008132	ENSMUSG00000062310	Glrp1	GRP-1	glutamine repeat protein 1	protein-coding	5.45598124064438	5.25716000847048	5.36729754464465	5.86152115002619	5.49982878265983	5.51289239608372	5.34071183417301	5.92752453882706	0.102344104301676	0.745062801251949	0.899431814827356
Merged-chr13-34963822-4	chr13	34963674	34963874	+	720.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026947)	promoter-TSS (NM_026947)	35.0	NM_026947	69123.0	Mm.482475	NM_026947	ENSMUSG00000021416	Eci3	1810022C23Rik|Kseg2	enoyl-Coenzyme A delta isomerase 3	protein-coding	2.82362010892088	2.765125121126	2.70565926725642	2.44915903357847	2.59312566662648	2.53448719205911	2.49824160614194	2.76469626845419	-0.43325346546269	0.530443221624953	0.786540312295789
Merged-chr5-149016021-3	chr5	149015894	149016094	+	723.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9032.0	NR_040429	100503307.0	Mm.188008	NR_040429	ENSMUSG00000086610	Gm15408	-	predicted gene 15408	ncRNA	3.57505404432523	3.62832284475135	3.73182541168251	3.40405417124873	3.66471248297942	3.74745955093608	3.66654303808244	3.57359217024812	0.272600970634323	0.567797362222727	0.808331754798167
Merged-chr18-62045690-4	chr18	62045612	62045812	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	92637.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	4.4283131598861	4.0925045772034	4.07960476318407	4.28798492850993	5.3098310591887	5.37197965613621	5.60393436213343	5.58824779343098	2.4651590372874	6.71261361124807e-12	6.22131672181024e-10
Merged-chr5-136962758-4	chr5	136962667	136962867	+	978.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025562, intron 1 of 4)	intron (NM_025562, intron 1 of 4)	690.0	NM_025562	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	4.95890878917223	5.276451215566	4.71862746016977	4.79571956245874	5.29293214994633	5.20583086425141	5.19796634500658	5.30664347626084	0.574857276688317	0.0706028372401274	0.284824266147984
Merged-chr13-36547480-4	chr13	36547379	36547579	+	975.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	186998.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	4.90641377290946	4.94728284299454	5.70195971903657	5.21748868030922	5.85438875612274	5.67230644748204	5.9461933633389	5.6739721633347	0.967097261442377	0.00200209584288259	0.0234155734473447
Merged-chr13-95679308-3	chr13	95679155	95679355	+	916.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 17 of 35)	intron (NM_027711, intron 17 of 35)	-17665.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	3.61192866894131	4.10370420138189	4.21532198151912	3.58108689902639	3.08946944627017	3.27712433717925	3.54193920207776	3.37052157284364	-1.94519750750025	0.000850517049186674	0.0118210411699812
Merged-chr7-16043005-4	chr7	16042868	16043068	+	806.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28877.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	3.82530509234275	3.58414355864418	3.37663509494225	3.45125146957319	3.85540651102727	3.79397497299697	3.65998059865384	3.9582435112855	0.79049254300107	0.0977264330540168	0.342552384075643
Merged-chr13-91697163-4	chr13	91696997	91697197	+	944.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 15 of 15)	intron (NM_001360776, intron 15 of 15)	-44424.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	4.56966952950834	4.37268299584099	4.57041167996963	4.55368757053185	4.25284232163178	4.2445960340143	4.47119215866493	4.56741014898108	-0.306909179141224	0.411732637108429	0.707123186245418
Merged-chr13-21167551-4	chr13	21167426	21167626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12405.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	4.14577662402808	4.10057211748538	3.94561326871251	4.39161551829972	4.39603562139017	3.89239114800357	4.25937956056065	4.23350590235835	0.112018863042154	0.79530159813041	0.920823289538254
Merged-chr13-102866240-3	chr13	102866141	102866341	+	848.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	105986.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	3.4309942016777	3.4916763550675	3.67395917565575	4.47318585112813	3.83200691238058	3.67569259979657	3.76468431033158	3.77820410297353	-0.272660611178773	0.635935515536201	0.845984638364879
Merged-chr12-76540335-4	chr12	76540234	76540434	+	975.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	6774.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	5.30182673029741	4.97509214043693	5.53571616762138	5.06005972983946	5.41280935007278	4.78491932432665	4.8021490296722	5.21067634047574	-0.247955891936439	0.482744649517683	0.757421686487144
Merged-chr13-44272890-3	chr13	44272789	44272989	+	929.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BLACKJACK|DNA|hAT-Blackjack	-56402.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	3.73069581389311	3.5808029415221	3.77776726290046	3.91420639796795	3.16625439007527	3.46188935194625	3.39755217017676	3.4080198540253	-1.39908075743772	0.00749088029029354	0.064039558993851
Merged-chr8-45331037-4	chr8	45330923	45331123	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133969, intron 1 of 10)	intron (NM_133969, intron 1 of 10)	2173.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	5.21170752617889	5.5951228217052	4.99454986648788	5.34971861002256	5.57220510433349	5.62895746778602	5.50800170635159	5.33620020861925	0.354532685131604	0.232797662242375	0.542464407511367
Merged-chr14-70060539-4	chr14	70060450	70060650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028560)	TTS (NM_028560)	-16895.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	5.58975843933078	5.57499182772843	5.19186799541554	5.78127620319772	5.69006441148684	5.47339372446581	5.71047573610149	5.63837422478905	0.108498543778927	0.703428878958305	0.880696618859024
Merged-chr5-112325423-4	chr5	112325313	112325513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018783)	promoter-TSS (NM_018783)	-956.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	6.0774758350391	6.30209229374795	5.89227544242723	5.56955926313158	6.47197809255905	6.18986472736759	6.74098446366225	6.43028296034124	0.759662723912293	0.00505432839380523	0.047898021667243
Merged-chr7-107566012-3	chr7	107565905	107566105	+	630.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1428.0	NM_172907	244198.0	Mm.77425	NM_172907	ENSMUSG00000051041	Olfml1	6720478C22|AV321997|BC047207|MVAL564|ONT2|mONT2	olfactomedin-like 1	protein-coding	3.21420711909631	3.37386470507998	3.32510265105925	3.23860894480416	3.18333952609618	2.99559063916847	3.25837039841218	3.09232050892395	-0.572294980465972	0.302581609311316	0.615043376360917
Merged-chr17-34280814-1	chr17	34280714	34280914	+	849.0	f0_c57.idr	Intergenic	Intergenic	6957.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	2.46927612842348	2.41442842588976	2.46947846281856	2.24491208133973	3.35810560774682	3.03735829257124	2.96895981498641	3.60173029068337	4.98633590853527	1.3827547029762e-08	7.15284135197259e-07
Merged-chr11-106973203-4	chr11	106973103	106973303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26322.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	6.08494859941223	5.90441860292771	5.44656370904977	5.20066957844811	6.25063650278994	6.41160061717016	6.16921399596204	6.12121106101839	0.871661321237318	0.00327000000392201	0.0341403349462418
Merged-chr17-87286286-4	chr17	87286187	87286387	+	888.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 1 of 19)	intron (NM_028639, intron 1 of 19)	3401.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	4.63495916524566	4.49873882913373	4.25052634908478	4.67608840107984	4.34917662320824	4.56598247650729	4.37269439338817	4.63264727340159	-0.128321306205191	0.733519616475303	0.894503508421563
Merged-chr18-36508020-3	chr18	36507918	36508118	+	686.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010415, intron 3 of 5)	intron (NM_010415, intron 3 of 5)	7787.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	3.16458695820451	3.21271480657085	2.78482184669841	2.63377825987698	2.73776594718624	2.44583553450152	2.49862726914602	2.42426465606489	-2.21758565644264	0.00725756040843393	0.0625179586484229
Merged-chr18-61065744-3	chr18	61065667	61065867	+	733.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001146268, exon 7 of 23)	exon (NM_001146268, exon 7 of 23)	20617.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	3.13679006452111	3.49136015344164	3.49604716246159	3.34842537470753	2.81895597314385	2.83266315302861	2.86826039475924	2.87527173691737	-2.4014312427603	0.000304608177000762	0.00513727511186092
Merged-chr2-132111520-4	chr2	132111415	132111615	+	980.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	33593.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	5.38671783367581	5.15831834014415	4.89213434379243	4.66841565438367	5.16984823374492	5.20917322546011	4.94181458568272	4.8504970675734	0.0279206397377162	0.936616782107288	0.977055763832964
Merged-chr13-34738721-4	chr13	34738591	34738791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138746)	promoter-TSS (NM_138746)	-951.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	5.56586996515219	5.4024985637147	5.64357283348107	5.82718524381789	5.37592347903935	5.38147512969836	5.42946568714703	5.58899786344043	-0.325882767156246	0.244775740720249	0.55588259948383
Merged-chr11-113683452-3	chr11	113683352	113683552	+	927.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361593)	promoter-TSS (NM_001361593)	699.0	NM_138598	28081.0	Mm.351688	NM_138598	ENSMUSG00000041629	Fam104a	D11Wsu99e	family with sequence similarity 104, member A	protein-coding	3.99263130058549	4.03662100796347	4.08699574239774	3.99994081237153	3.95496817221167	3.78195895390258	3.87637771256117	4.32959286243927	-0.0649729474534087	0.881661655042732	0.955405266716702
Merged-chr14-7858573-3	chr14	7858466	7858666	+	937.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081427, intron 1 of 45)	intron (NM_001081427, intron 1 of 45)	40609.0	NM_134080	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	3.49556090149454	3.95729095913722	3.71745540589552	3.73196116623603	3.42908600316288	3.54941830021475	3.75134117798459	3.76511773334139	-0.345454517006592	0.483092990903045	0.757619494557644
Merged-chr3-152261502-4	chr3	152261414	152261614	+	886.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199465, intron 1 of 12)	intron (NM_199465, intron 1 of 12)	4281.0	NM_001357206	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	3.76518702913152	3.66199069024018	3.66468833727825	4.07000008993813	3.64279079105754	3.54942325776016	3.42376628841069	3.60906099597796	-0.791090430616196	0.111792270025549	0.369494973839994
Merged-chr7-119881402-2	chr7	119881302	119881502	+	771.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	14056.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	3.58519141826946	3.25095488512421	3.53323581058157	3.27656045900357	3.5493385598193	3.53694711454911	3.75884634891333	3.4196352668299	0.542772389836665	0.28546511788514	0.597175035258208
Merged-chr7-67370412-4	chr7	67370328	67370528	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 1 of 11)	intron (NM_001357324, intron 1 of 11)	2430.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	5.60149259197073	6.20662175318454	5.57614881165141	5.02021847019988	5.76563035582235	5.55263515100284	5.3167546515258	5.33961330917983	-0.261218475612435	0.464767546802788	0.745554240368249
Merged-chr3-144872184-3	chr3	144872086	144872286	+	995.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22884.0	NM_139148	229927.0	Mm.290600	NM_139148	ENSMUSG00000037033	Clca3b	Clca4	chloride channel accessory 3B	protein-coding	3.57081318636826	3.33376393134607	4.13738579279211	3.93627524467335	2.9114652641515	3.38165377381425	3.66046617513167	3.39404536132132	-1.35971476215502	0.0316558505712694	0.173484354066276
Merged-chr4-132628931-2	chr4	132628831	132629031	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10115.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	2.74793049826179	2.59830894181866	2.3890274742695	2.46084131208888	2.70355436990661	3.03693887633656	2.73806332441531	2.86710040092214	1.41073884017049	0.0357814322430133	0.187906637570123
Merged-chr5-105409293-4	chr5	105409185	105409385	+	919.408325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-6490.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	4.69668687561977	4.59750422384289	4.73598648410874	4.6058095561076	4.72018444963224	4.70726098422616	5.01324763469143	4.8417944407432	0.356175575091987	0.287899748153929	0.599886086244852
Merged-chr11-23754475-4	chr11	23754375	23754575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 3 of 9)	intron (NM_009044, intron 3 of 9)	16495.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	6.19292192877891	7.11635042114749	6.25673234316329	6.21277261964175	6.7575609060589	6.87559884695924	6.63661170689212	6.27247121031055	0.209043410777585	0.477102369265062	0.753320087442721
Merged-chr17-24488871-4	chr17	24488767	24488967	+	700.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027937)	promoter-TSS (NM_027937)	84.0	NM_027937	268932.0	Mm.70989	NM_027937	ENSMUSG00000033597	Caskin1	3300002N10Rik|C130061I24|C630036E02Rik|mKIAA1306	CASK interacting protein 1	protein-coding	3.98559332171806	4.12243613171694	4.20161157611234	3.98075234665523	3.74104367401902	3.66023972696398	3.76822784043748	3.93597718365548	-0.829099851905634	0.0630796556237455	0.26640595270849
Merged-chr16-22116274-4	chr16	22116172	22116372	+	955.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	RMER1C|Other|Other	47027.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	4.63440958195298	4.58692025041772	4.9071356281488	4.71117374050101	5.2465717091047	4.68009486111623	4.69681957169851	5.36641868489161	0.658858359942239	0.0697951700858423	0.282784062587669
Merged-chr2-38497761-4	chr2	38497655	38497855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13942.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	5.71990566560999	5.81294736829041	5.55299972679566	5.68334732963525	6.21318210198936	6.19697379120079	5.99208586586623	5.97665950954539	0.648794731193385	0.0080242245427953	0.0673295153520719
Merged-chr9-16222546-2	chr9	16222446	16222646	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	155685.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	3.15408440012916	3.17801080739719	3.09749100459479	2.85055272018729	3.19200991020343	2.87411276034177	3.14207778471734	2.97391113270469	-0.0458617709048206	0.938849817339086	0.97782317093996
Merged-chr2-133444934-4	chr2	133444830	133445030	+	951.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107229.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	4.79194466249889	4.51146620650483	5.16530277098044	5.242763649013	4.47520731461958	4.2220606101815	4.57668360192523	4.67633094894859	-0.999818763901082	0.0111432910524208	0.085195307606902
Merged-chr12-72408620-3	chr12	72408531	72408731	+	893.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153457, exon 1 of 9)	5' UTR (NM_153457, exon 1 of 9)	423.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	3.74676708960774	3.5567375827816	3.6922268772182	3.35044692464334	4.01478130460783	3.92243863123516	3.83431690427765	4.23203754340426	1.27038899892088	0.00626118940462401	0.0559951250950788
Merged-chr2-167333694-3	chr2	167333627	167333827	+	826.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	15451.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	3.32574573223123	3.05193595211863	3.52377216144731	3.64097672538113	3.04869834293197	2.9157434000541	3.08197129206491	3.09081470665322	-1.47584433986746	0.0158625991974222	0.109037561397713
Merged-chr3-88716864-4	chr3	88716746	88716946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009069)	promoter-TSS (NM_009069)	-8.0	NM_001163310	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	6.10637849154646	5.57027710400367	5.11698442730611	5.4985406158829	5.74730800935626	5.60772692546835	5.83943161305253	5.88697122138242	0.263466050579967	0.394200172142947	0.693379056693329
Merged-chr8-61575321-4	chr8	61575247	61575447	+	758.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	15822.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	3.91771003814606	4.14830530221539	4.25270284706193	4.18809181762778	4.00046440967647	4.09438875063632	4.31387153367016	4.11736892752049	-0.0122444950803882	0.976305065625684	0.991528225629167
Merged-chr11-73047792-4	chr11	73047693	73047893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025818)	promoter-TSS (NM_025818)	-74.0	NM_025818	66874.0	Mm.41903	NM_025818	ENSMUSG00000020783	Ncbp3	1200014J11Rik|C130061O14Rik|C78393	nuclear cap binding subunit 3	protein-coding	7.33604020783622	7.78972820111948	7.18228457259343	7.31627396598302	7.45415127664701	7.59509914902709	7.57048230311069	7.23481447485182	0.0561631761661783	0.788049959510307	0.917932066973263
Merged-chr2-31119222-4	chr2	31119138	31119338	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	intron (NM_001355105, intron 1 of 15)	-22738.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	5.31873073323799	5.49047684467117	4.5097389484159	4.3469466074461	4.72807124157574	5.43781447543321	4.75123288451871	4.50690067805457	-0.206480105027679	0.656077414504925	0.856430271691361
Merged-chr16-91382574-4	chr16	91382496	91382696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 1 of 7)	MTEa-int|LTR|ERVL-MaLR	9813.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	7.03606862162347	7.06722132238505	7.06110392001861	7.22746706686143	6.94383289870054	6.55189420195792	6.94044842328393	6.82367956082105	-0.38287293323435	0.0568057007312144	0.24965354044645
Merged-chr9-77688962-4	chr9	77688863	77689063	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52231.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	5.21044559411319	4.79683318122324	5.44633740866406	5.35747941232481	4.94404435158435	4.77746901577021	4.96765681856132	4.09757518103615	-0.944207970863671	0.0206721452414889	0.130918090263604
Merged-chr11-53457212-3	chr11	53457127	53457327	+	824.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290789)	promoter-TSS (NM_001290789)	22.0	NM_027917	71774.0	Mm.274370	NM_027917	ENSMUSG00000018387	Shroom1	Apx|Shrm1	shroom family member 1	protein-coding	4.00180885241459	3.63207109092387	3.72961896590579	4.03668351162056	3.78489172615308	3.42856269806012	3.60977657581189	3.3135936250465	-0.952356718196024	0.0688935924503524	0.280510442974404
Merged-chr18-39639005-4	chr18	39638888	39639088	+	933.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4A|LINE|L1	-134509.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	4.25698131702886	4.11612113003342	4.17011582680164	3.80074526987891	4.43274320796091	4.04411542903915	4.00969089247896	4.25493459079066	0.317355118805735	0.463216314292907	0.74463957416247
Merged-chr10-98572982-4	chr10	98572859	98573059	+	960.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	-221092.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	4.14300136703127	4.08166350276816	4.84195294174505	4.52480981488394	4.70406735387746	4.3251616364668	4.61430285107273	4.74019556483746	0.382877504292653	0.35618750125161	0.662704502355483
Merged-chr4-83486579-4	chr4	83486496	83486696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290527)	promoter-TSS (NM_001290527)	-133.0	NM_001347143	101739.0	Mm.105331	NM_133948	ENSMUSG00000028484	Psip1	AA408851|AU015605|Dfs70|Ledgfa|Ledgfb|Psip2	PC4 and SFRS1 interacting protein 1	protein-coding	7.41606033226184	7.32159913866845	7.72329721266623	7.25425601191829	6.75327570906001	7.27618532571894	6.92296605629662	7.05696494700526	-0.580508239225446	0.00674906406998192	0.0592929685802571
Merged-chr13-44292613-5	chr13	44292513	44292713	+	795.133362	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76126.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	3.53423067773308	4.09199167594401	3.41346671486122	3.71067189553702	3.44355005516508	3.65140786596772	3.63101462356254	3.69570038406944	-0.349491063986469	0.49728436715908	0.766982020988234
Merged-chr1-36264404-4	chr1	36264322	36264522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153408)	TTS (NM_153408)	9003.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	6.39902286841319	6.34183092175576	6.56655042019412	6.50771259369323	6.58906345667227	6.72613358119667	6.1133662854121	6.3955782828364	0.0288907544748288	0.90141375937012	0.963360409270078
Merged-chr17-31297814-4	chr17	31297695	31297895	+	826.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242427, intron 1 of 19)	intron (NM_001242427, intron 1 of 19)	1571.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	4.04551088605535	3.9543628735137	3.69557430184332	3.77427628188483	3.7705572392392	3.87156914350586	4.1115861688058	3.80365229094998	0.0676501724998701	0.880604339534232	0.955181994949486
Merged-chr10-99461280-3	chr10	99461192	99461392	+	972.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147879.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	4.06658869848915	4.12752890825479	3.90015771706753	4.6619497117734	4.18568341759978	4.43377312934848	4.40955773839145	4.46618591505104	0.30161207792391	0.503973029208692	0.770602054650717
Merged-chr10-118588246-4	chr10	118588159	118588359	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31734.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	5.09374392842662	5.14443488516072	4.89169889295485	5.25010816179978	4.74685600834369	4.99150843696315	4.71421531863387	4.85129166326837	-0.574963396582851	0.076126812539251	0.298021691218312
Merged-chr9-62421279-3	chr9	62421178	62421378	+	742.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175484, exon 12 of 12)	3' UTR (NM_175484, exon 12 of 12)	79935.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	3.66110319085593	3.66164747727676	3.40740374149803	3.66502238466967	3.01375555374138	3.27360489730186	2.93465610856173	3.51319986741179	-1.4850642016797	0.0129779221547829	0.0948834008678995
Merged-chr17-8147789-4	chr17	8147671	8147871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083938)	promoter-TSS (NM_001083938)	17.0	NM_001083938	100037283.0	Mm.426736	NM_001083938	ENSMUSG00000095687	Rnaset2a	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2A	protein-coding	6.82478640055203	6.97415493489645	6.91548012361037	6.16196614051356	6.43099001854815	6.61870296213837	6.63687641629643	6.50653346800384	-0.282069046876793	0.273973896527365	0.585726797048155
Merged-chr19-12830224-1	chr19	12830124	12830324	+	615.0	f0_balb.idr	intron (NM_134152, intron 7 of 8)	intron (NM_134152, intron 7 of 8)	-31553.0	NM_146702	258697.0	Mm.223132	NM_146702	ENSMUSG00000046272	Olfr1444	MOR202-4	olfactory receptor 1444	protein-coding	3.3696725788883	3.39693155733017	3.31952323937748	3.19803008425986	2.83695627541492	3.074330697354	2.88683168365139	2.96330372843911	-1.63474311953473	0.00726450549050018	0.0625475065088076
Merged-chr2-150755253-4	chr2	150755154	150755354	+	612.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355068, intron 2 of 13)	intron (NM_001355068, intron 2 of 13)	6173.0	NM_172117	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	3.23011662497443	3.39974802130782	3.16103044982017	3.34591202713114	3.52148742337717	3.85338607792021	3.5706593902217	3.81929894851056	1.31016168420556	0.0111831187786452	0.0854045860733781
Merged-chr15-103453704-4	chr15	103453598	103453798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153505)	promoter-TSS (NM_153505)	-127.0	NM_153505	105855.0	Mm.30805	NM_153505	ENSMUSG00000022488	Nckap1l	4930568P13Rik|AI463083|Hem1|Hemp1	NCK associated protein 1 like	protein-coding	7.92554957335804	7.84855202353495	7.85435598644272	7.97354592784887	7.84250385199351	7.77608785427961	8.08946435711865	7.80345263344867	-0.026825504500839	0.872218383323141	0.95194285598202
Merged-chr16-13668139-4	chr16	13668060	13668260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028761)	promoter-TSS (NM_028761)	10.0	NM_001358452	74108.0	Mm.182350	NM_028761	ENSMUSG00000022685	Parn	1200003I18Rik|DAN	poly(A)-specific ribonuclease (deadenylation nuclease)	protein-coding	8.26064638855033	8.31546074367912	7.97357686177505	8.1058862539827	8.1280634098049	8.16524068712214	8.23973623569415	7.77822319335008	-0.102105557139117	0.569318389918071	0.809366519988776
Merged-chr17-84267916-4	chr17	84267799	84267999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 30 of 37)	L1M3|LINE|L1	-79952.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	5.23079760781984	4.77826720617257	5.34772672662227	5.4110409177309	5.29971926320923	5.06273649807738	5.17531057249958	5.06640218873699	-0.11572982081421	0.721635808695045	0.88887319340171
Merged-chr6-52921514-4	chr6	52921421	52921621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-11901.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	6.43825220107531	6.02156208560101	6.02458630622577	6.46949594439194	5.94489022352959	6.24478002886269	6.25367619985871	6.04240906646894	-0.224421707689483	0.37546029274801	0.678437997263264
Merged-chr8-124830199-3	chr8	124830095	124830295	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198632, exon 10 of 10)	3' UTR (NM_198632, exon 10 of 10)	32834.0	NM_025615	66523.0	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	5.26276898916472	5.77021515320495	5.26372599825774	5.16199180453054	3.98257812654756	4.29688102458942	4.01813435384198	4.32904649268545	-2.7503811627343	2.89507779097366e-11	2.41298292838073e-09
Merged-chr13-3545114-4	chr13	3545003	3545203	+	843.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	7028.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	3.58722237920296	3.78343970408377	3.88257127251302	3.9651603945089	4.33117579690258	4.20352454462249	4.26751884691964	3.93219678097282	0.982831868216421	0.027634321901803	0.158589325054296
Merged-chr4-134092643-4	chr4	134092530	134092730	+	957.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001162970)	TTS (NM_001162970)	2443.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	4.76114272712456	4.45034811167334	3.9270746668992	4.45776431520795	4.68643167824179	4.71106186468624	4.70441503810303	4.53533692630181	0.504083629500058	0.204712916666918	0.508129404704835
Merged-chr5-32112709-4	chr5	32112616	32112816	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23756.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	5.11929457811902	5.27580911079281	4.95899705043135	4.68986480249378	5.95695884766043	6.09266108678952	6.1927956530826	5.91437544391229	1.77717555870635	6.25129712359561e-10	4.17411893021024e-08
Merged-chr2-143978644-4	chr2	143978564	143978764	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 2 of 23)	intron (NM_024281, intron 2 of 23)	32599.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	4.29993733724922	4.7952742096047	5.02614499462119	5.29309269892251	4.9867575258178	4.13147659701983	4.83848971578384	4.78675388840343	-0.371135629757719	0.405316449404829	0.702237410904421
Merged-chr11-115574668-2	chr11	115574557	115574757	+	911.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002929, intron 7 of 18)	MTC|LTR|ERVL-MaLR	10213.0	NM_001002929	445007.0	Mm.4379	NM_001002929	ENSMUSG00000020739	Nup85	Pcnt1|frount	nucleoporin 85	protein-coding	3.25632604527701	3.33364273167093	3.06718219376641	2.91964878161724	3.39768574856812	3.48484509570002	3.35565344347547	3.31251384035823	0.908982174419724	0.0972109852200537	0.341632274227805
Merged-chr9-102616432-3	chr9	102616336	102616536	+	883.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081122, intron 5 of 16)	intron (NM_001081122, intron 5 of 16)	9688.0	NM_001301689	28135.0	Mm.38910	NM_001081122	ENSMUSG00000032534	Cep63	4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2	centrosomal protein 63	protein-coding	3.23348938048931	3.354279002427	3.36297696981366	3.26871085302001	3.6313268774109	3.47877547957041	3.62390215730806	3.98311645608026	1.27574230545486	0.0113174952251869	0.0861477908922656
Merged-chr1-180848276-4	chr1	180848189	180848389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2862.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	6.80611002891228	7.23911095016719	6.68807632637218	6.88686479624079	6.80375235279275	6.88084217924387	7.00467826492712	6.773725035196	-0.0820361486124387	0.701916846199796	0.879918696943051
Merged-chr5-143315167-7	chr5	143315020	143315220	+	987.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172726, exon 1 of 6)	5' UTR (NM_172726, exon 1 of 6)	240.0	NM_172726	231868.0	Mm.440105	NM_172726	ENSMUSG00000039244	E130309D02Rik	A630028N22	RIKEN cDNA E130309D02 gene	protein-coding	5.33498069074086	5.29771935467729	5.36578568580476	5.26442350417242	5.45811151844079	5.38505982287326	5.36810982725328	5.6509083459512	0.283606434985159	0.304974595480351	0.617499479135937
Merged-chr14-56486678-4	chr14	56486580	56486780	+	825.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033043, intron 24 of 36)	intron (NM_001033043, intron 24 of 36)	83983.0	NM_001033043	30054.0	Mm.287783	NM_001033043	ENSMUSG00000000365	Rnf17	MMIP-2|Mmip2|TDRD4	ring finger protein 17	protein-coding	4.06730993709382	4.39860175735117	4.01854847313102	4.05217817558741	4.16528926453585	3.97957985650843	4.05069275763725	4.24556347546629	-0.0627337741171774	0.880511803929717	0.955181994949486
Merged-chr7-19300717-4	chr7	19300565	19300765	+	946.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9380.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	4.39609009866686	4.05381403544608	3.73223688441689	3.42334268188275	4.22627529820232	4.18638118118812	3.71806601988786	4.53371093430607	0.629113065445268	0.231743398679325	0.541273042204025
Merged-chr4-43479698-4	chr4	43479581	43479781	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4028.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	4.77938702817174	4.31677882544753	4.21490324491061	4.57463977406665	5.2140982610331	4.87993169602068	4.52823632650335	4.45917397470299	0.689807751221537	0.0909056661446295	0.329442208161936
Merged-chr10-119080733-2	chr10	119080633	119080833	+	812.416687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12172.0	NR_045348	73400.0	Mm.416864	NR_045348	ENSMUSG00000100681	1700064J06Rik	-	RIKEN cDNA 1700064J06 gene	ncRNA	2.91792603082559	3.23158368575915	3.18600684496641	3.37659979623677	3.21159555365099	3.23415411762161	3.34269417083659	3.50418207881469	0.460942878153895	0.421540979261455	0.714001052191097
Merged-chr14-57398552-4	chr14	57398447	57398647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030004)	promoter-TSS (NM_030004)	-64.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	7.66856113962299	7.74840959347478	7.57327764297044	7.99325400619077	7.69394258479821	7.57503149385194	8.02027445476441	7.72238898733901	-0.00344208383253096	0.985679846700639	0.994721627180638
Merged-chr18-84087734-3	chr18	84087621	84087821	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146090)	promoter-TSS (NM_146090)	-437.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	5.89807920549187	5.89494332412389	5.85174951213656	6.03747793654486	5.8862673766471	5.84860404874545	6.0615068187223	6.27319805226674	0.14642979598254	0.556231266400698	0.801846753708994
Merged-chr11-117870799-4	chr11	117870708	117870908	+	879.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027919, intron 3 of 6)	intron (NM_027919, intron 3 of 6)	2718.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	4.61471549311523	4.22700712501912	4.41264440306113	3.86776390064161	4.76799803935615	4.630056554248	4.70005124436008	4.45298059758269	0.815936278750813	0.0455281165559894	0.218608055068724
Merged-chr7-118491964-4	chr7	118491884	118492084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033380)	promoter-TSS (NM_001033380)	-9.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	7.1352952454014	7.29367709011503	6.86751289675443	7.38712751056898	7.04723025929152	7.20521801562444	7.06573889618787	7.1082573737966	-0.128593749321231	0.52413918219018	0.782772137578204
Merged-chr12-73685431-3	chr12	73685330	73685530	+	745.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	100634.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	4.16102322981931	4.58042111196813	4.16168941905467	3.23968130685317	4.00216623188985	4.3791562358346	3.84267014328333	4.01623864525127	-0.143160532157381	0.796368642024338	0.921103730429807
Merged-chr1-92641950-4	chr1	92641854	92642054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028108)	promoter-TSS (NR_028108)	-6.0	NR_028108	66915.0	Mm.30179	NM_001163425	ENSMUSG00000073616	Cops9	1110002M09Rik|Myeov2	COP9 signalosome subunit 9	protein-coding	6.84234444625985	6.92620506069354	6.84354501981061	6.67183870262427	6.46312070377039	6.84705413450983	6.92415351151506	6.69610315761505	-0.116691981764788	0.586629705091163	0.818771633763754
Merged-chr1-173753593-2	chr1	173753481	173753681	+	629.25	f0_balb.idr|f0_c57.idr	intron (NM_008329, intron 5 of 8)	intron (NM_008329, intron 5 of 8)	-11772.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	3.89569002030269	3.55936703188242	3.8962765254439	3.63245685579597	3.84815473113465	3.96918707316671	3.73113021768743	3.79601219665037	0.277911564946198	0.544012291431502	0.795027379566929
Merged-chr5-135009885-5	chr5	135009764	135009964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033794, exon 1 of 5)	non-coding (NR_033794, exon 1 of 5)	408.0	NR_033794	68758.0	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	6.23543800944363	6.43572874915674	6.88477209077168	6.31567573101174	6.51354977012124	6.55068961234441	6.63579618231723	6.73627571775867	0.183340727067183	0.439842260998952	0.727425871224001
Merged-chr2-154657612-1	chr2	154657512	154657712	+	656.0	f0_balb.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	586.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	4.5182861399543	4.86362042647903	4.33191626944715	4.35474024054338	4.63434046288698	4.96436799955418	4.40909889938097	5.07192404237456	0.555104697307669	0.156424874350423	0.44232345985177
Merged-chr9-63985319-4	chr9	63985210	63985410	+	956.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	36749.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	4.66274902269199	5.02402484532867	5.00626439380744	4.51290771229806	4.52911840519406	4.62794374855648	4.71731595319471	4.351165251902	-0.531420157454553	0.157660733946767	0.444315791347796
Merged-chr17-63865417-2	chr17	63865317	63865517	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	intron (NM_001037997, intron 1 of 18)	1436.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	2.97769211778424	2.76947235298418	2.86241529652175	2.83253594106929	3.02440422159583	2.69725793317059	2.7911813961589	2.73408898741488	-0.151317911373052	0.81086386368036	0.926854276252049
Merged-chr1-9546305-6	chr1	9546196	9546396	+	967.422241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021511, exon 1 of 1)	exon (NM_021511, exon 1 of 1)	888.0	NM_021511	59014.0	Mm.29061	NM_021511	ENSMUSG00000061024	Rrs1	5730466A07Rik|AA415037|D1Ertd701e|Rrr	ribosome biogenesis regulator 1	protein-coding	4.38524198862149	3.92573361278535	4.0910494623416	3.6617816046256	4.04938076794437	4.21689613121938	4.16355394600197	4.17987464322308	0.325618505656746	0.468771920414111	0.747931420316418
Merged-chr7-142060412-3	chr7	142060305	142060505	+	784.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347560, exon 1 of 5)	5' UTR (NM_001347560, exon 1 of 5)	448.0	NM_001347560	101513.0	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	3.18392790193095	3.23152781670783	3.61055256276137	2.98391519850039	2.82032410765087	3.47836330313458	3.29136299887464	3.41287287034417	0.0151685603331171	0.980604932755465	0.99281244474172
Merged-chr4-121018423-4	chr4	121018335	121018535	+	936.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1188.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	5.30208370235346	5.5876596334425	5.54623961253276	5.58903705429817	5.02514200643069	5.38542556900394	4.8193591432514	4.79552002906829	-0.905256154626258	0.00419659696087327	0.0416261949662763
Merged-chr1-59953062-4	chr1	59952963	59953163	+	738.545837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037725, intron 3 of 7)	intron (NM_001037725, intron 3 of 7)	40057.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	4.63183406510719	4.47153181319048	5.42276111548877	5.04728098867667	4.32883278571291	4.72474031701682	4.65216904128224	4.89512030163898	-0.590390984232008	0.149036560296589	0.431037882465195
Merged-chr14-75032380-4	chr14	75032277	75032477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198642, exon 2 of 14)	exon (NM_198642, exon 2 of 14)	16350.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	5.53776516945645	5.53068026325523	5.71469610623385	5.63428732150777	5.25197107666863	5.60131854898411	5.68560215099985	5.23197146753661	-0.272386472576377	0.337100320134276	0.646924549627673
Merged-chr5-24118467-3	chr5	24118369	24118569	+	867.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161800, intron 1 of 9)	intron (NM_001161800, intron 1 of 9)	17879.0	NM_001161800	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	2.49399374432256	2.43590740792368	2.49420734915136	2.11564120934445	3.32416497215139	3.00378024029863	3.66425885317171	3.34277538290608	7.28626993237501	8.85954690116395e-13	9.52588653894183e-11
Merged-chr12-77833626-3	chr12	77833525	77833725	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-393030.0	NM_172952	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	4.47577266909645	4.59820878517757	3.99958403555339	4.47449110490241	4.00873257111561	4.89605712555346	4.03928658269734	4.34796648246894	-0.0885345106222993	0.848229935394741	0.942625689889496
Merged-chr14-50924868-4	chr14	50924774	50924974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133676)	promoter-TSS (NM_133676)	19.0	NM_133676	66246.0	Mm.274791	NM_133676	ENSMUSG00000006289	Osgep	1500019L24Rik|GCPL-1|PRSMG1	O-sialoglycoprotein endopeptidase	protein-coding	7.82509975051369	7.79536960831521	7.50578406348415	7.29064017581978	7.586805713671	7.93653626617773	7.38169280315603	7.40323547599788	-0.0268404975496327	0.901711864310659	0.963514762035143
Merged-chr14-19416170-4	chr14	19416066	19416266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	186421.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	6.75673091750801	6.3205174214669	7.27691286577167	6.72327282939771	6.60652757809005	6.8446137964683	6.6790018913908	7.33753442260187	0.122272196643823	0.65968252434841	0.858482199806119
Merged-chr7-67463867-4	chr7	67463754	67463954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90996.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	6.56044709827348	6.36166873849185	6.46656415855543	6.88026776067389	5.96331927915259	6.14783433065937	6.20007365970278	6.20757235029304	-0.7063730980476	0.00341218375941104	0.0353171190651619
Merged-chr6-84590459-4	chr6	84590373	84590573	+	972.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175475, intron 1 of 6)	intron (NM_175475, intron 1 of 6)	3337.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	5.10034197754306	5.15064277603854	4.70122917433673	4.96332829282223	5.11188659606137	4.91996970286409	4.94589724272879	4.89537404527812	-0.0241763262672997	0.940453735711942	0.978605877642248
Merged-chr1-149948575-1	chr1	149948475	149948675	+	708.0	f0_balb.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	12715.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	3.2963243303966	3.32689639022585	3.29674463997242	3.51520665119241	3.19529464880945	3.34898080021489	3.16578459793256	3.40505353967641	-0.338114177397636	0.527398696113866	0.784361896301674
Merged-chr10-57688181-3	chr10	57688082	57688282	+	878.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039050, intron 2 of 4)	intron (NM_001039050, intron 2 of 4)	37201.0	NM_001190402	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	3.84419728066371	4.02759549673598	3.79092368300178	4.29388799522515	3.7182710207471	4.16347533727907	3.9766362362835	3.67440704816613	-0.349789117484297	0.463389554078532	0.744702198409515
Merged-chr1-86525395-4	chr1	86525295	86525495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1162.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	7.49761742866866	7.39679833089868	6.92161799233372	6.82591037299367	7.38777914110369	7.51469584498844	7.50536118956907	7.20497275347378	0.302398369963819	0.180542460172613	0.476910553426349
Merged-chr12-102431710-4	chr12	102431606	102431806	+	918.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	L1Md_F2|LINE|L1	8107.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.14395478891485	4.90580026868212	5.11343982022257	4.27701318223573	5.59504820590824	5.43536719068243	4.72591023325154	4.7451199116584	0.558671920048252	0.181784431438079	0.478446672285694
Merged-chr4-41628260-5	chr4	41628142	41628342	+	972.0285640000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175138, intron 13 of 19)	(CA)n|Simple_repeat|Simple_repeat	12060.0	NM_027147	69638.0	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	5.25914399177459	4.4026921048567	5.09528539040223	4.86869091144976	4.51145036491477	4.97216966970665	4.61852830130664	4.55023032768644	-0.55217944220913	0.156181281761205	0.442021137941209
Merged-chr7-93013470-4	chr7	93013367	93013567	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-66412.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	4.64393257940067	4.08127426407409	5.11534272373673	5.36138119028174	4.97670839896464	4.31461674580591	5.25787205372649	5.25451533783189	0.229631767190092	0.758469875428484	0.905140871206707
Merged-chr16-30365693-2	chr16	30365601	30365801	+	729.0	f0_balb.idr|f0_c57.idr	intron (NM_001128096, intron 3 of 33)	(TG)n|Simple_repeat|Simple_repeat	22829.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	3.68225729227472	3.66193287595958	3.41188140656225	3.85622566418464	3.61972738463248	3.10181558810874	3.33904101785886	3.77446594112407	-0.576366068393363	0.311781882940071	0.623665218229603
Merged-chr9-39629297-1	chr9	39629197	39629397	+	582.5	f0_c57.idr	Intergenic	Intergenic	6172.0	NM_146279	258276.0	Mm.390137	NM_146279	ENSMUSG00000059867	Olfr960	MOR224-12	olfactory receptor 960	protein-coding	2.7230759889815	2.65762259199702	2.79930485406417	2.70502789573656	3.45070543574447	3.35523666007643	3.05555013686485	3.38703433184585	2.54260013373595	4.40383253505355e-05	0.00101214206009873
Merged-chr10-42244721-4	chr10	42244618	42244818	+	929.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	32024.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	4.09650061491884	4.3032095032728	4.60830015556648	4.54576589597556	4.02912831695494	4.37257039181816	4.43883587826506	4.24261866523784	-0.333507548795119	0.415941881646572	0.710034947207746
Merged-chr1-165737652-4	chr1	165737572	165737772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26086.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	6.30898942742643	6.42445799171676	6.36621301544249	6.65177186993147	6.52742230389239	6.66374673573476	6.51941781608489	6.22677356825308	0.0494652464459189	0.828624599531241	0.934199261424475
Merged-chr11-79254201-4	chr11	79254058	79254258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019653, intron 1 of 8)	CpG	537.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	5.40821255595288	5.61216432395971	5.34584856330791	5.35908574903124	5.72892008972384	5.80959803491539	5.92270398558103	5.80013063837804	0.642109156837021	0.0139140789759251	0.0996168001838034
Merged-chr5-120887665-2	chr5	120887565	120887765	+	929.1666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011852)	promoter-TSS (NM_011852)	-52.0	NR_126529	23960.0	Mm.389688	NM_011852	ENSMUSG00000066861	Oas1g	AI449562|L2|Mmu-L|Mmu-L2|Oas1b|Oias-1|Oias1	2'-5' oligoadenylate synthetase 1G	protein-coding	3.51477473674933	3.38087820724585	3.6133068599011	3.34001394679298	3.48417381381773	3.13541499510547	3.22040275480703	3.46129646343472	-0.416117299397748	0.440308437003871	0.727741310566664
Merged-chr15-31564054-4	chr15	31563994	31564194	+	998.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4739.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	5.04746272051169	4.91091863367966	5.54511667461159	5.21179156858753	4.66102226369179	5.00519376973974	4.9896688592893	5.11078410515388	-0.492511484349803	0.148014223191613	0.429496303610103
Merged-chr12-103065190-4	chr12	103065075	103065275	+	778.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081017, intron 14 of 48)	intron (NM_001081017, intron 14 of 48)	116316.0	NM_001081017	217843.0	Mm.387073	NM_177621	ENSMUSG00000021198	Unc79	9030205A07Rik|Mlca3	unc-79 homolog (C. elegans)	protein-coding	4.35701866179736	4.05948392185859	3.99567647643483	4.61320563425285	4.16824849245505	4.06486371312062	3.97954534586148	4.09379222232163	-0.548514215592624	0.211871025454014	0.516720579166049
Merged-chr3-31094577-4	chr3	31094471	31094671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011386)	promoter-TSS (NM_011386)	-487.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	7.85918139223726	8.29817753601039	8.2181531542998	7.8109844692734	8.24025653155013	8.16216653574268	8.26802231298177	7.75964003138088	0.0829907153043186	0.680163801103069	0.86866966089289
Merged-chr10-17418342-4	chr10	17418252	17418452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-304876.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	6.84879311177001	6.91620175903628	6.64984742463999	6.81546485401269	6.67710859843883	6.49321875413848	6.82830832286368	6.46208317663679	-0.264390358867489	0.207890240735418	0.512003717702028
Merged-chr12-87262867-4	chr12	87262771	87262971	+	969.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142581, intron 2 of 18)	MTD|LTR|ERVL-MaLR	1373.0	NM_134044	104799.0	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	4.75546200328846	5.13952317255613	5.11145417708654	5.46136274005326	5.2077599470019	5.64211654873742	5.30646313912936	5.44045394348999	0.431196054160967	0.194515494781476	0.494921122539793
Merged-chr6-124425839-3	chr6	124425754	124425954	+	719.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9999.0	NM_001360570	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	3.12435196139631	2.96254948608442	3.61069358284005	3.02649715967392	3.1907055660355	3.04399809188075	2.99049841696618	2.78894695072587	-0.739671865534483	0.250203537872135	0.561249063980067
Merged-chr10-43901720-4	chr10	43901611	43901811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130892)	promoter-TSS (NM_130892)	25.0	NM_001081054	76563.0	Mm.5904	NM_001081054	ENSMUSG00000019863	Qrsl1	2700038P16Rik|C80053|GatA	glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1	protein-coding	6.50772167887716	6.50404197388186	6.31446021773371	6.45027541268821	6.53115348464778	6.50996947907108	6.56976070291511	6.4019872001994	0.0853769635730982	0.683367803662362	0.870309436951249
Merged-chr16-56029378-3	chr16	56029275	56029475	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356449, intron 1 of 5)	CpG	342.0	NM_001356449	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	5.86006646484621	5.83566602451761	6.31125175929672	5.86460832670188	6.30117142716047	6.19804710906637	5.9025539475307	6.18028313680168	0.288250880169921	0.258625422046363	0.570489393947544
Merged-chr9-75037654-4	chr9	75037561	75037761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021548)	promoter-TSS (NM_021548)	47.0	NR_152135	59046.0	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	6.4863882901094	6.72786923013823	6.41839223237717	6.55200128680264	6.58445198981459	6.71271435123511	6.45436682606272	6.13707262949832	-0.0918216012349736	0.689909310999107	0.873650535087508
Merged-chr7-127993751-4	chr7	127993637	127993837	+	944.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023258, exon 1 of 3)	5' UTR (NM_023258, exon 1 of 3)	130.0	NM_023258	66824.0	Mm.24163	NM_023258	ENSMUSG00000030793	Pycard	9130417A21Rik|Asc|CARD5|TMS-1|TNS1|masc	PYD and CARD domain containing	protein-coding	4.60448593172979	5.1545821196636	4.647938081707	4.21089541492212	5.00198222333408	5.01627218953168	4.78298659241595	4.97622830236619	0.52511912996275	0.176338923070031	0.471307205534908
Merged-chr6-29348042-4	chr6	29347942	29348142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_184053)	promoter-TSS (NM_184053)	-64.0	NM_001285412	12321.0	Mm.392075	NM_007594	ENSMUSG00000029767	Calu	9530075H20Rik	calumenin	protein-coding	8.69998981825725	8.85528561490018	8.30222531049333	8.69699547016564	8.56954510631355	8.51428518694391	8.56549523799806	8.31980616595756	-0.20068300634331	0.250399670332396	0.561519742118699
Merged-chr19-46699370-4	chr19	46699255	46699455	+	934.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025563, intron 1 of 4)	intron (NM_025563, intron 1 of 4)	-8088.0	NM_020577	57344.0	Mm.28566	NM_020577	ENSMUSG00000003559	As3mt	2310045H08Rik|Cyt19	arsenic (+3 oxidation state) methyltransferase	protein-coding	5.4311815999671	5.30922328177758	5.0205658282278	5.241212285609	4.8929477680648	5.16057078309975	4.5481611687882	4.9819741164193	-0.668137563831668	0.0437348304357427	0.212883915447291
Merged-chr8-126908945-4	chr8	126908815	126909015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37006.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	7.29308307158597	7.34646251322446	7.14980095144191	7.27325738269142	7.25473767014005	7.26647374782628	7.48691218023488	7.42834451577447	0.122729492555409	0.495313038073096	0.76561677206899
Merged-chr5-102062008-2	chr5	102061908	102062108	+	660.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	7913.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	2.41664029213861	2.28394791678965	2.48524666463502	2.23360138856537	2.32510436098996	2.65798494691219	2.54049538809481	2.6696282982122	1.11895524900684	0.116738614865204	0.378058049387613
Merged-chr17-34746807-4	chr17	34746708	34746908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2911.0	NM_009780	12268.0	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	5.27234802265066	4.85681620004752	5.01627380791197	4.98135232809455	5.13971522248548	5.38621051019399	5.1259439771189	5.29828254812903	0.384296535711562	0.209748795969365	0.514248879921348
Merged-chr6-108340536-3	chr6	108340451	108340651	+	817.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 5 of 61)	L2a|LINE|L2	127455.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	4.06561001523061	3.80101868196644	3.94987582933014	4.18502263978055	2.7795407177659	3.00392131641153	2.96286741265659	2.96961307948686	-6.841813142619	4.20021021987158e-10	2.88856776077526e-08
Merged-chr9-85842651-3	chr9	85842554	85842754	+	724.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164792)	promoter-TSS (NM_001164792)	-198.0	NM_001164792	21983.0	Mm.20864	NM_011627	ENSMUSG00000035274	Tpbg	5T4|AW495680|WAIF1	trophoblast glycoprotein	protein-coding	3.13893966915182	3.41960469551524	3.13929852433273	3.19607428991251	3.39891717575271	3.4856104526148	3.19015604818639	3.1998558452017	0.353532051454993	0.513898533748566	0.776751544502021
Merged-chr17-74454497-3	chr17	74454407	74454607	+	958.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 1 of 8)	RLTR26B_MM|LTR|ERVK	4601.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	4.4835193977241	4.18244897571592	4.36468084521819	4.18263710728543	4.20088267260399	4.2611097735837	4.34487000695122	4.44287499726212	0.0332959427656613	0.93174973445407	0.97535206477795
Merged-chr12-111041358-4	chr12	111041239	111041439	+	977.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198023, intron 2 of 11)	intron (NM_198023, intron 2 of 11)	1541.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	4.44757189453956	4.7575493485238	4.35539874932376	4.43604450662297	4.6099310570185	4.78840738473207	4.47203568965953	4.89379139762427	0.413573916696263	0.258220190781638	0.570019292688994
Merged-chr18-88820273-4	chr18	88820160	88820360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73947.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	7.1750720335013	6.86053784265943	7.69630419305321	7.62020386338762	6.40386342184285	6.43256362494119	6.73928073529351	6.45127585494846	-1.21953713416407	1.08066353329374e-06	3.76139607023547e-05
Merged-chr1-78713260-3	chr1	78713166	78713366	+	685.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	54826.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	3.89246100672439	4.00038247413017	4.14938319441679	4.0615117994643	3.42484897704865	3.62724631641246	3.55892888026528	3.5700526608514	-1.52690994270578	0.00144170361632199	0.0180571919243679
Merged-chr10-14475091-4	chr10	14475008	14475208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002268, intron 2 of 24)	intron (NM_001002268, intron 2 of 24)	69928.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	6.77345993770785	6.87693808842988	7.11642414155417	7.03693693126118	6.8066551354475	6.48414461082518	6.89025099159013	6.99551399523753	-0.211655287032554	0.32046479807086	0.632321446523416
Merged-chr18-80150193-4	chr18	80150077	80150277	+	951.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175028, intron 1 of 3)	intron (NM_175028, intron 1 of 3)	1305.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	4.73442718295517	4.77080026057067	4.35186616263457	4.76785898080508	4.60929326460742	4.6239092871234	4.81764829251209	4.69475382643962	0.0193474584125635	0.956361461361663	0.984660360711923
Merged-chr8-117362141-4	chr8	117362026	117362226	+	978.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	12956.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.7922789692012	4.54691816472771	4.45365076215816	4.49553824795722	4.59405892883748	4.17837556893987	4.66738039403232	4.49331892811614	-0.156205723066805	0.678332475817617	0.868034533256964
Merged-chr4-105557687-4	chr4	105557608	105557808	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F-int|LTR|ERVL-MaLR	400361.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	5.44415101052126	5.03304703704944	5.57124486718982	5.50125923576373	5.23887063240978	5.28889472580038	5.12180332221519	4.88410829173988	-0.4750593011915	0.130967809070144	0.402851817789318
Merged-chr15-36496797-4	chr15	36496713	36496913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175134)	promoter-TSS (NM_175134)	-22.0	NM_175134	68839.0	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	6.49888814364571	6.45741644503181	6.69161122386352	6.62342754289959	6.70049253253983	6.55120551211608	7.17950072953715	6.51250500586895	0.276853428892376	0.240589743785637	0.551185699479073
Merged-chr8-125227422-4	chr8	125227399	125227599	+	876.830322	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 10 of 12)	intron (NM_174854, intron 10 of 12)	173304.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	4.0357594453354	3.78836857282119	4.21153944336062	4.1458786124231	3.78588531326832	3.95446185584012	3.87145160679074	4.20881167266284	-0.265517757934628	0.550793108462203	0.798698257491569
Merged-chr1-64737858-4	chr1	64737746	64737946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022721)	promoter-TSS (NM_022721)	-96.0	NM_022721	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	8.7774153798173	8.62805480855044	8.81474933052728	8.77992138782878	8.74528076125569	8.49568653518225	8.87683083093234	8.64978384439292	-0.0628670824789479	0.686304023016856	0.871787672169905
Merged-chr3-89905612-4	chr3	89905502	89905702	+	968.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	7594.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	4.24480546788209	4.56751656019794	4.38199463729896	4.6448948426587	4.51019061222423	4.27146693550559	4.12884144275787	4.50244933515558	-0.26117131946328	0.508336368057865	0.773435815954657
Merged-chr8-104146505-3	chr8	104146391	104146591	+	737.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24022.0	NM_001141924	65115.0	Mm.41849	NM_001141922	ENSMUSG00000031872	Bean1	Bean	brain expressed, associated with Nedd4, 1	protein-coding	3.7794989895228	3.58981473673606	3.49667641024564	3.71542667551977	3.8559511504748	4.04639808478514	3.90698121326773	3.72595169148339	0.67850915315568	0.139159990989811	0.414793509156774
Merged-chr5-143434618-4	chr5	143434495	143434695	+	711.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29898.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	3.40426589700717	3.65412590646641	3.89749460027581	3.56668181836975	3.96705138027182	3.58542800443885	3.88014949434525	3.84879579547698	0.582693750882855	0.224628110279931	0.533137854672065
Merged-chr9-13748327-3	chr9	13748231	13748431	+	852.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023858)	promoter-TSS (NM_023858)	-850.0	NR_024025	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	3.58905513370748	4.05351840482782	3.75174333588742	3.88131345344	3.46028722884985	3.51944891165043	3.7854425193821	3.74957456452684	-0.619345369194166	0.205620037655192	0.509336732685136
Merged-chr5-149376056-4	chr5	149375993	149376193	+	644.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35656.0	NM_027519	70717.0	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding	3.57133571849731	3.48565060721886	3.57183281099258	3.29402278655796	3.50064982953014	3.32031808764523	3.70552651695772	3.89119482825064	0.48125422177689	0.350230546493961	0.657825425895823
Merged-chr14-93697867-4	chr14	93697791	93697991	+	842.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	192778.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	4.36540589862901	4.33168610263357	4.98692127206684	5.12297604557939	4.13202275260426	4.35578162142916	3.99539955862268	3.75685087427529	-1.61377278235461	0.000599898271191921	0.00893869772768888
Merged-chr10-8519841-3	chr10	8519736	8519936	+	674.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1011.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	3.3946828297292	3.28380310522206	3.45442088691054	3.49971141538835	3.55163834341392	3.62732271576884	3.6997479898906	3.7601075542985	0.780265614553073	0.110976837609718	0.3680570242501
Merged-chr12-79136059-4	chr12	79135943	79136143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	5255.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	7.24479738562235	6.96640887124773	7.39020329983538	7.47895538026487	6.7204622251993	6.77102576058504	6.62489464602251	6.40364368871627	-0.906409530763843	2.91345663880403e-05	0.000708496515522488
Merged-chr14-47542639-4	chr14	47542535	47542735	+	910.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172599, exon 10 of 10)	3' UTR (NM_172599, exon 10 of 10)	25799.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	3.59047318700832	3.30616366979927	3.69743582329924	3.75682814721772	3.47562896078693	3.81631019779742	3.77914808612198	3.7453029074115	0.302850990279771	0.545178204966957	0.795786194536872
Merged-chr9-90216204-1	chr9	90216104	90216304	+	970.0	f1_balb.idr	intron (NM_194334, intron 9 of 12)	intron (NM_194334, intron 9 of 12)	53226.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	3.16373873795757	2.89097940267581	3.32883866943573	2.99359907817643	3.19724434042813	3.15162775666011	3.26281797670645	3.16248613684356	0.38439475182968	0.497445838534906	0.767090358309685
Merged-chr9-95700514-3	chr9	95700419	95700619	+	976.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	49839.0	NM_001311123	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	3.77241819666418	4.26696076267738	4.1454592240418	3.42665265126714	4.24025350757755	4.44926761185363	4.51834854177616	3.9430602273596	0.927216201687803	0.0596319935052028	0.257432415435883
Merged-chr11-6528820-4	chr11	6528719	6528919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045893)	promoter-TSS (NR_045893)	-59.0	NR_045893	100041286.0	Mm.459507	NR_045893	ENSMUSG00000085156	Snhg15	Gm11974	small nucleolar RNA host gene 15	ncRNA	8.01128418711713	8.34017155047865	7.73050901804425	7.98656740559954	8.18917196773809	8.3320509806385	8.22616638756393	8.06067666388756	0.214108634530685	0.247072723432974	0.558168726560377
Merged-chr6-34866441-4	chr6	34866345	34866545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	3299.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	5.63378859060933	5.20161314550998	5.24464476802487	5.3903167907195	5.83180928429545	5.2494414611088	5.45450442652264	5.17417139232183	0.163860562164872	0.604492737597259	0.828485859893348
Merged-chr7-27451459-4	chr7	27451366	27451566	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290525)	promoter-TSS (NM_001290525)	-952.0	NM_001290525	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	5.25971921261956	4.9912226325811	4.87350992801361	5.33554011038841	4.91409517503862	4.93240504420585	4.69164568049083	4.97859765533165	-0.504134826582576	0.127363688422526	0.397092421297721
Merged-chr14-63860268-4	chr14	63860146	63860346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028228)	promoter-TSS (NM_028228)	-66.0	NM_028228	72400.0	Mm.379214	NM_028228	ENSMUSG00000021958	Pinx1	2210403I16Rik|2610028A01Rik|67-11-3|AU024023|LPTS|LPTS1	PIN2/TERF1 interacting, telomerase inhibitor 1	protein-coding	6.51236522437056	6.64696803389357	6.65295047088638	6.43677183590382	6.20316989668683	6.53331278854968	6.61899752520129	6.29516863590967	-0.211079310934448	0.347935660952812	0.655787470042804
Merged-chr5-149274779-8	chr5	149274687	149274887	+	965.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308462, intron 2 of 3)	MT2B|LTR|ERVL	9783.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	4.66123087644159	4.42490525522811	5.19950970914751	4.64024992078718	5.11350756511885	4.79700508040359	4.83229829857388	4.92224611907593	0.355001853301742	0.332518731970291	0.64352893833202
Merged-chr7-63824242-3	chr7	63824136	63824336	+	769.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR10_RN|LTR|ERVK	-92621.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	3.61322227385962	3.38227817167066	3.6637437172245	3.87382514390212	3.22868504713892	3.30857049855705	3.54736200136449	3.61164241093102	-0.744798716085343	0.162895933994375	0.452408197190121
Merged-chr1-85703523-1	chr1	85703423	85703623	+	1000.0	f0_c57.idr	intron (NM_013673, intron 17 of 19)	RLTR53B_Mm|LTR|ERVK	33083.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	7.01201320538891	7.19474693680644	6.88296566593537	6.70794452757198	6.72004989179585	7.07366973455992	7.13943920875333	7.26454388255242	0.143078925141162	0.522205892784753	0.781902756584753
Merged-chr11-111227498-4	chr11	111227378	111227578	+	959.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	161314.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	5.28757269579821	5.23382668118509	4.82402731829259	5.37595567154212	4.97350674102948	4.92026655220498	5.01966216502228	4.78032578828519	-0.541439462399438	0.0969406466016052	0.34112163689647
Merged-chr9-69989414-4	chr9	69989304	69989504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016787)	promoter-TSS (NM_016787)	-62.0	NM_016787	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	7.20014076787434	7.19706331090525	6.62905746621436	7.05313567752214	7.42227596010845	7.80220412324668	7.23060756186723	7.46758210460828	0.610020007976169	0.00559864029771639	0.0516332751685871
Merged-chr7-91506837-3	chr7	91506751	91506951	+	909.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011807, intron 2 of 22)	intron (NM_011807, intron 2 of 22)	416065.0	NM_011807	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	4.8334633348654	4.39342577594624	4.77478845230421	5.16420131512457	3.45857861173035	3.59868712226033	3.53701574183182	3.75676767102829	-3.73270742439445	4.03046898416078e-11	3.27868287798377e-09
Merged-chr2-12389254-3	chr2	12389143	12389343	+	667.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355539, intron 1 of 6)	intron (NM_001355539, intron 1 of 6)	30217.0	NM_001355537	66960.0	Mm.34059	NM_024185	ENSMUSG00000026767	Mindy3	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958|Fam188a	MINDY lysine 48 deubiquitinase 3	protein-coding	3.14235109341429	3.15271290073366	3.57141602041774	3.28167329636977	3.34741317935155	3.25325653176529	3.25198430716137	3.2032380766844	-0.102874932417199	0.85077463678282	0.943730330874647
Merged-chr5-113736469-4	chr5	113736372	113736572	+	803.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001010825, intron 1 of 2)	intron (NM_001010825, intron 1 of 2)	690.0	NM_001010825	231630.0	Mm.21926	NM_001010825	ENSMUSG00000053334	Ficd	D5Ertd40e|Hype	FIC domain containing	protein-coding	4.077794195826	4.06450939788787	3.88345512276193	3.83735729875909	4.29257890815573	4.05712263952876	3.75955196803497	3.98226857096797	0.226237022008617	0.608927862070792	0.830813576385782
Merged-chr15-75695887-4	chr15	75695791	75695991	+	928.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8397.0	NM_001163465	14787.0	Mm.57052	NM_008164	ENSMUSG00000022580	Rhpn1	BB023497|Grbp|Rhophilin|mKIAA1929	rhophilin, Rho GTPase binding protein 1	protein-coding	4.14152088358699	4.37987929663651	4.19323481333396	4.31864257495198	4.56513152284055	4.32033607881802	4.72990056627622	4.57745009743578	0.667382924126485	0.0768150777550347	0.29957252758993
Merged-chr7-78912512-4	chr7	78912420	78912620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291220)	promoter-TSS (NM_001291220)	-904.0	NM_001291221	57444.0	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	6.59472517226059	6.68073864333628	6.29471985099498	6.23647431781889	6.28367758051522	6.41332173604542	6.37055674834124	6.01717302954447	-0.265402183546336	0.272376374985494	0.583838924250549
Merged-chr6-56485292-3	chr6	56485187	56485387	+	758.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115653.0	NM_001159955	18575.0	Mm.5145	NM_011054	ENSMUSG00000004347	Pde1c	-	phosphodiesterase 1C	protein-coding	3.36623432558608	3.55589007647375	3.70115863396312	3.6753319524791	3.33365137005674	3.60378112403774	3.86560539576307	3.54267511847209	0.0305716307677565	0.952337439031309	0.983110341498473
Merged-chr6-99666161-4	chr6	99666083	99666283	+	907.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025829, intron 1 of 6)	L2a|LINE|L2	588.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	3.42158478454863	3.41157212060598	3.48093478178714	3.92808840946282	3.75268839284652	3.40850021523319	3.28534776339487	3.87208249015278	0.0392360336164432	0.944365180956331	0.980025502854549
Merged-chr2-59954900-3	chr2	59954787	59954987	+	776.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 12 of 35)	intron (NM_001001182, intron 12 of 35)	-72281.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	3.32636036292804	3.10092754870653	3.70006208080509	3.61783335294735	2.92886368410762	2.91009371567461	2.87117726304947	3.211669067766	-1.91822496578722	0.00298558749387214	0.0318750760801447
Merged-chr17-24549013-7	chr17	24548897	24549097	+	915.4761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013630)	promoter-TSS (NM_013630)	-953.0	NM_013630	18763.0	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystin 1, transient receptor poteintial channel interacting	protein-coding	4.33804715239904	4.03671024850458	3.98182208466128	3.50198686465787	4.06449925277755	4.25433475802854	4.15367326658905	4.21356453877073	0.484953741064558	0.29944601513204	0.611652880049459
Merged-chr6-116675018-4	chr6	116674905	116675105	+	733.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1169.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	3.2108034811782	3.25611828132404	3.01471720937525	3.15949127627979	3.40879901860775	3.3231058231318	3.4694812841783	3.43237331970153	0.891175206773147	0.08989300732286	0.327399922126285
Merged-chr3-65956115-3	chr3	65955988	65956188	+	810.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355433, intron 3 of 11)	intron (NM_001355433, intron 3 of 11)	2161.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	3.84334796303893	3.78794372478276	3.50278509751217	3.34928663638337	3.42639795229123	3.22920205225344	3.43273880476367	3.60786625776506	-0.653944163590705	0.223420430421554	0.531494362386812
Merged-chr19-21714636-4	chr19	21714551	21714751	+	780.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61342.0	NM_146096	226016.0	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	3.60781807858221	3.61715250677976	3.76320357548787	3.81782192301508	3.88520929264848	3.66798234469647	3.69835698059318	3.29944045340301	-0.141733570656186	0.778481767069337	0.913745806756274
Merged-chr1-157014279-4	chr1	157014297	157014497	+	897.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74771.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	3.87573274115555	4.26453252104975	4.22943283808692	4.19529217548809	3.81486460690146	3.57865471916349	3.69990639517859	3.59184428899754	-1.35556678241557	0.00405406772272368	0.0404889134889503
Merged-chr10-117335793-3	chr10	117335695	117335895	+	859.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4-int|LTR|ERVK	41178.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	4.06639555962272	3.89309038208656	3.8315542851631	3.45930520438447	3.59234821874018	3.78730532632881	3.8654784215433	4.22534738980034	0.180787855235858	0.71748655892038	0.887023184585483
Merged-chr19-44360292-4	chr19	44360164	44360364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	26938.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	5.8553158622341	5.78973685954247	6.09802210751622	5.27316990366978	5.78814841161904	5.70525299729202	5.34895097838764	5.68622167890962	-0.206769358687805	0.505593529970492	0.771488881809541
Merged-chr3-87515926-6	chr3	87515827	87516027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9651.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	5.95212674374247	6.03487046203524	6.25558408607509	5.92434266316058	5.58246767690389	5.5462695495647	5.71506676552826	5.57903549635535	-0.707014824245049	0.00576290391239966	0.0527532284984955
Merged-chr13-115077536-4	chr13	115077433	115077633	+	843.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033228, intron 1 of 28)	intron (NM_001033228, intron 1 of 28)	12625.0	NM_134058	105083.0	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota mRNA surveillance and ribosome rescue factor	protein-coding	4.14952830377541	3.80158177977788	4.64955438495124	4.50724007550009	3.99922449792488	4.12517744531938	4.08460903304992	4.09971962963765	-0.620063551884696	0.171804399078335	0.4650957452081
Merged-chr10-81176605-4	chr10	81176519	81176719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007907)	promoter-TSS (NM_007907)	-12.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	6.33395536433289	6.39068401155056	6.29666370576054	5.96633451156547	6.9160720712393	6.97858283393749	6.30254526361286	6.6612495019663	0.731295010898304	0.00332128237897063	0.0345925604993782
Merged-chr8-116992749-4	chr8	116992615	116992815	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026572, intron 1 of 4)	intron (NM_026572, intron 1 of 4)	734.0	NM_026572	68133.0	Mm.258462	NM_026572	ENSMUSG00000034424	Gcsh	1100001L02Rik|5730591C18Rik	glycine cleavage system protein H (aminomethyl carrier)	protein-coding	4.21367077650804	4.36658933660527	3.82217759182498	4.06827637414916	3.93842964027041	3.82273728425441	4.06315568260589	4.25311494450158	-0.274173708387571	0.535579303912942	0.789798609290198
Merged-chr3-84715239-4	chr3	84715119	84715319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49027.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	7.25508742871492	7.50891552912807	7.29786866530573	7.23477481459877	6.92812178736731	7.16383516614893	7.03926767225125	6.95504501960191	-0.419027185146455	0.0267830116137867	0.155521943519148
Merged-chr7-130865748-4	chr7	130865648	130865848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346515)	promoter-TSS (NM_001346515)	24.0	NM_001346515	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	8.83650497803423	8.99346111091337	8.91508812409237	8.85034568057898	8.8762397755721	8.99558877395589	9.08765306589311	8.90952000581525	0.0853185020137416	0.551167551765567	0.798837168776829
Merged-chr15-31418227-4	chr15	31418155	31418355	+	965.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35434.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	5.48652235479584	5.25590897274225	5.37655272620481	5.82127799295757	4.89151336998601	5.22678437160946	5.43314194751976	5.31351953240074	-0.533374530112127	0.097070405238255	0.341353541181752
Merged-chr9-41130768-4	chr9	41130673	41130873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	27289.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	6.13157678188273	6.20894135446813	6.40770105557345	6.29882539764174	6.28647009817211	6.20231255887401	5.94998652222539	5.97613902027414	-0.225818023586004	0.338961568451127	0.648223242193853
Merged-chr5-146963736-4	chr5	146963616	146963816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256101)	promoter-TSS (NM_001256101)	81.0	NM_001256101	76366.0	Mm.486234	NM_029581	ENSMUSG00000016510	Mtif3	2810012L14Rik|AI414549	mitochondrial translational initiation factor 3	protein-coding	4.94945681011873	4.75550981829642	4.84986436245837	4.65691624658659	4.76118011141741	4.3095113231098	4.8937058667159	4.81129818319206	-0.166948682588102	0.641101290950053	0.848590400530615
Merged-chr11-61029653-2	chr11	61029553	61029753	+	826.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001267593, intron 1 of 1)	intron (NM_001267593, intron 1 of 1)	7089.0	NM_001267593	16515.0	Mm.4970	NM_010603	ENSMUSG00000042529	Kcnj12	IRK-2|IRK2|Kir2.2|MB-IRK2	potassium inwardly-rectifying channel, subfamily J, member 12	protein-coding	3.76939994791646	3.43862627660794	3.4004123373434	3.33476848117598	3.47022270603855	3.45265666727024	3.75300449120798	3.72100066680709	0.379804143238967	0.453962476774548	0.737821491230936
Merged-chr8-70560914-2	chr8	70560814	70561014	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	21239.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	3.14824371303659	2.9860448407246	3.20645090783096	3.92673509302637	2.98563451775193	2.76204613666286	2.9490631055378	3.02338024539135	-1.79279958785607	0.010521067161387	0.0819342493961014
Merged-chr16-10879704-4	chr16	10879594	10879794	+	925.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35103.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	4.44370475436399	4.64406384962798	4.11058011811389	4.35235509953275	4.58506388816563	4.06230549072912	4.58050912063409	4.73948460408915	0.267354310567485	0.512588503200369	0.77591327696453
Merged-chr9-107581216-4	chr9	107581116	107581316	+	896.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178020)	promoter-TSS (NM_178020)	-80.0	NM_178020	109685.0	Mm.447916	NM_178020	ENSMUSG00000036091	Hyal3	Hyl3	hyaluronoglucosaminidase 3	protein-coding	4.66807615447833	4.13769675286176	4.31513906448812	3.99641918839699	4.70160038774328	4.4442888846743	4.3825140999586	4.31245052603726	0.440693638313931	0.288250366408689	0.600291782398667
Merged-chr12-110737898-4	chr12	110737804	110738004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027149)	promoter-TSS (NM_027149)	7.0	NM_027149	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	7.55711966206091	7.46382032690383	7.43055614301776	7.22233948477738	7.38367346737834	7.58816817508371	7.21916698814534	7.40603951498131	-0.0146464560858703	0.937988002400352	0.977460307804652
Merged-chr5-123058594-2	chr5	123058494	123058694	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-11578.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	2.662405181339	2.62501106069862	2.66274440551182	2.53824044494609	2.3956191765653	2.41231440084293	2.82364428869049	2.59811512073905	-0.273192735152758	0.695419677259344	0.87660540152023
Merged-chr15-89170259-4	chr15	89170135	89170335	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159521, intron 3 of 37)	intron (NM_001159521, intron 3 of 37)	3716.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	4.4097744135206	4.59123335723641	4.45602106688533	4.41710462203745	4.94820214773271	4.39264400339356	4.81650569243807	4.83687150236668	0.663282974741716	0.0654694599208595	0.272402550939455
Merged-chr5-92374332-3	chr5	92374245	92374445	+	912.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-11049.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	4.09664447911131	4.13595249345998	4.3582459777278	4.23214121792369	4.2565439887776	3.9515240871282	4.07993918718614	4.23178885945101	-0.170647087918908	0.674917451284554	0.866443308954518
Merged-chr18-80220604-3	chr18	80220504	80220704	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025299, intron 3 of 3)	MLT1C-int|LTR|ERVL-MaLR	13737.0	NM_001042408	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	2.8119760127098	2.82149391742375	3.09588905475456	3.56172051153934	2.43358190064652	2.47305369140993	2.44660359682161	2.53074543323691	-4.15181991674874	5.94832685078514e-05	0.00131163555425042
Merged-chr16-22857690-4	chr16	22857600	22857800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026400)	promoter-TSS (NM_026400)	-31.0	NM_001316746	70573.0	Mm.68291	NM_001081368	ENSMUSG00000004462	Tbccd1	5730478M09Rik|AU015083|BB165076	TBCC domain containing 1	protein-coding	9.11251667292182	9.23197599219306	8.99549502370539	8.89884756371043	9.01561765713864	9.10789069195041	8.96259445767745	8.73488027229063	-0.124745261664807	0.436440147399386	0.72511335456143
Merged-chr9-71805847-4	chr9	71805772	71805972	+	992.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34270.0	NM_001304362	68178.0	Mm.99961	NM_026599	ENSMUSG00000032232	Cgnl1	4933421H10Rik|9930020M10Rik|AI503810|Jacop	cingulin-like 1	protein-coding	5.42269176407275	5.4213129790515	5.90877854410003	5.44758103501397	5.4698724135687	5.68421301575216	5.75231732142967	5.04551626929475	-0.0791163012934541	0.800422866883153	0.923040237917604
Merged-chr10-118110222-4	chr10	118110137	118110337	+	951.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31550.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	4.41225903215242	4.28041663666806	4.90654551874323	5.18319730482977	4.53595737156344	4.81858751191401	5.04140088942184	5.12192974510267	0.265389356424171	0.529657821711292	0.785803907947309
Merged-chr10-8834097-4	chr10	8834035	8834235	+	997.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	51935.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.65155582403576	4.77483054362548	5.03442121961963	4.63076180547858	4.55448743519442	5.01166931171892	4.4593667582939	4.72778252935182	-0.160486504321917	0.659330339424745	0.858234860598338
Merged-chr17-88597216-4	chr17	88597109	88597309	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29346.0	NM_029858	77057.0	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	4.79601594113704	5.0306737625885	4.79678890082078	4.95085641592255	4.99677677269625	4.8516626504191	4.98633040324211	4.97408344872619	0.102061880077336	0.747512060403874	0.900610385204342
Merged-chr19-18622081-3	chr19	18622008	18622208	+	696.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	Lx3A|LINE|L1	9705.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	3.64746306937774	3.36365250625924	3.87424609254542	3.38826197358178	3.34989243501953	3.35804943569752	3.36048087739114	3.69437047572289	-0.427697208611332	0.424102062981257	0.715980284164482
Merged-chr6-38736526-4	chr6	38736458	38736658	+	908.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 7 of 14)	intron (NM_010433, intron 7 of 14)	73489.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	4.45461958465421	3.9621901273295	4.45537881057353	3.9338231437957	3.88465037547269	3.54349466932462	4.20201154785151	4.17528984027488	-0.629218800834308	0.20210741200379	0.504605685187757
Merged-chr18-11351863-3	chr18	11351773	11351973	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-281403.0	NM_001252495	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	4.99790108484771	5.14902617110741	5.45735793175367	4.97528167449178	4.20296993550288	4.46138297925478	3.96292492675785	3.97601273751705	-2.22986273529323	7.84771620283114e-08	3.42484728143052e-06
Merged-chr5-99983873-4	chr5	99983768	99983968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4930.0	NM_001077267	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	6.28038498312811	6.50965942345665	6.68312780426955	6.78208896457188	6.44620484290059	6.51605673898911	6.39722174310063	6.31579919191533	-0.249299525467728	0.27138258927377	0.58318211882733
Merged-chr10-67223027-4	chr10	67222929	67223129	+	932.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 8 of 25)	intron (NM_207221, intron 8 of 25)	37279.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	4.80126142285947	5.08133905982301	4.76475999724109	4.94760649971472	4.9806689810819	4.50049568860027	4.70432631362068	4.55726657089675	-0.400954119572517	0.258507722867209	0.570389684111402
Merged-chr16-64851863-4	chr16	64851738	64851938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347245)	promoter-TSS (NM_001347245)	-115.0	NM_001347245	72020.0	Mm.25960	NM_028059	ENSMUSG00000047141	Zfp654	1600021C16Rik|1810008K20Rik|433036|Gm5488|Znf654	zinc finger protein 654	protein-coding	9.53055774245803	9.55840916894069	9.69868206979688	9.83631989934264	9.67652217192399	9.59924604294244	9.80862584884786	9.48298238874332	-0.0207399479152908	0.891094897285531	0.959258016639054
Merged-chr3-9801843-4	chr3	9801750	9801950	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	31829.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	5.44532219129353	5.48950697593512	5.09737024233373	5.04624111073307	5.79695897983932	5.47492500154629	5.62182063479685	5.05705069150843	0.4403381260489	0.172223714132337	0.465491237828959
Merged-chr1-173426894-2	chr1	173426816	173427016	+	827.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 1 of 8)	RLTR49|LTR|ERVK	6312.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	3.7912952572055	3.83566456229199	3.84574078058575	3.80662183905458	3.96311169498961	4.16521328337077	4.15138852352103	3.94499604908161	0.652332916028497	0.123211797125708	0.389179723070951
Merged-chr10-53863688-4	chr10	53863598	53863798	+	964.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112789.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	4.79497877820608	4.4818896260955	4.83109940904008	5.01659460006443	4.74448624650604	4.29009122236526	4.66161121618846	4.89556494327606	-0.282283749090006	0.453372270115935	0.737478513976464
Merged-chr16-91390281-2	chr16	91390181	91390381	+	796.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 5 of 7)	B3A|SINE|B2	-15954.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	3.17379335242191	2.79127088875791	2.81422030142532	2.67473868481704	2.88837496426709	3.17751203190168	2.9950246105728	3.00500022159509	0.642173020957231	0.300551882001428	0.612477626586326
Merged-chr9-71167251-4	chr9	71167148	71167348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1528.0	NR_110517	102635087.0	Mm.444536	NR_110517	ENSMUSG00000111429	Gm32511	-	predicted gene, 32511	ncRNA	7.54971241854889	7.32856201935464	7.3497418240297	7.46720957710064	7.61432162203779	7.61708819197677	7.50496734734147	7.42513231793849	0.155035995646923	0.373756051920346	0.677211638825943
Merged-chr3-105894066-3	chr3	105893956	105894156	+	914.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-10365.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	3.87712888364846	3.78112650897972	4.23829570266434	4.18342928537101	3.77968997376108	3.99826532156509	3.86221390730057	4.15550251849919	-0.246707712893674	0.586132548452577	0.818557203798918
Merged-chr5-134176545-7	chr5	134176468	134176668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033572, exon 1 of 11)	exon (NM_033572, exon 1 of 11)	199.0	NM_033572	94254.0	Mm.29508	NM_033572	ENSMUSG00000061979	Rcc1l	5730496C04Rik|AU019812|Wbscr16	reculator of chromosome condensation 1 like	protein-coding	5.17885288299549	4.93974472894404	5.34416943732502	4.6293663411776	4.67573498546941	4.776447083556	4.82325918326024	5.20504655055541	-0.302763505593632	0.412419253683173	0.707568213891115
Merged-chr3-59235029-3	chr3	59234938	59235138	+	765.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 18 of 43)	intron (NM_177855, intron 18 of 43)	-24156.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	3.45993876942472	3.5050542850283	3.35067592387894	3.74547807679459	3.48109059999656	3.13581626103458	3.22013503390645	3.22924395782244	-0.883975487609011	0.1129285221155	0.371431046423879
Merged-chr17-33824544-4	chr17	33824421	33824621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_103515)	promoter-TSS (NR_103515)	41.0	NM_016844	54127.0	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	6.98540828326061	6.62180301220539	6.24583356910451	5.813679751476	7.14011623500528	7.10204581924244	6.49853325755508	7.20960640425779	0.759854303754203	0.0118888817641204	0.0893033679915923
Merged-chr13-30642332-4	chr13	30642263	30642463	+	735.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	-17696.0	NM_001037955	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	2.99491193538874	3.15338065071324	2.7878980500582	2.94104392828165	3.29146553321515	3.16774102596677	3.21584883461692	3.11584280224107	0.901575418685846	0.116126026036274	0.377069221624742
Merged-chr5-90891188-5	chr5	90891091	90891291	+	980.080017	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008176)	promoter-TSS (NM_008176)	-54.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	6.96839482880552	7.42445789409272	6.53150711321173	5.58787087280457	6.30268374702948	6.59334947776733	5.95328320853661	5.3738538939662	-0.974060293086296	0.131104540272384	0.403070580167935
Merged-chr11-80146087-4	chr11	80145999	80146199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3946.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	7.24289511645799	7.13556166356515	7.09126521464499	7.01207277253174	6.83989909628809	6.9218970458983	6.86820050605107	7.05083168694963	-0.273323591135611	0.151576577467067	0.435253719845424
Merged-chr7-145030844-4	chr7	145030744	145030944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90919.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	6.5667950507204	6.63118852768131	6.79180759958957	6.80356956596716	6.53929883816914	6.72821918239819	6.2431151220446	6.92882414298377	-0.109811498350695	0.635283265029387	0.845633612363053
Merged-chr13-67306373-6	chr13	67306242	67306442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003666)	promoter-TSS (NM_001003666)	70.0	NM_001003666	431706.0	Mm.439456	NM_001003666	ENSMUSG00000055341	Zfp457	Rslcan-6	zinc finger protein 457	protein-coding	5.28934553080057	4.74131423853478	5.23066956346862	5.15461054154086	5.02412574507587	5.09963269651941	5.26381558796513	5.54785760695674	0.234584570551912	0.474877774922963	0.75193151536302
Merged-chr10-128062489-2	chr10	128062389	128062589	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019766, intron 1 of 7)	intron (NM_019766, intron 1 of 7)	3507.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	2.96809200698766	2.9151700699899	2.63981297425025	3.0585212747513	2.74922300334362	3.01666332426142	2.89869658223655	2.90757735569614	-0.0854537010350772	0.892869384504941	0.959907411788261
Merged-chr4-126058503-4	chr4	126058408	126058608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356446)	promoter-TSS (NM_001356446)	-57.0	NM_001356446	230751.0	Mm.38907	NM_172701	ENSMUSG00000042616	Oscp1	1810007P19Rik|5730415O04|6030436A01Rik	organic solute carrier partner 1	protein-coding	5.57479891862838	6.25084589724291	5.74366141927692	5.61587638103077	6.00382410571952	5.8951928030027	6.37011803971851	6.15975182396758	0.466178554328755	0.0996756472108802	0.346274239485736
Merged-chr12-17554331-4	chr12	17554260	17554460	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9487.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	4.99547407459239	4.77027917654418	5.11864304133857	4.83731413480838	4.95477663455238	4.71567088903044	4.83745659184965	4.43905714322753	-0.343527814848222	0.327130076649189	0.63867529942819
Merged-chr16-33820960-4	chr16	33820852	33821052	+	912.5125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8713.0	NM_010580	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	5.08364161482898	4.9338146621696	4.41689201522302	5.12994841160437	5.21982909823864	4.98672188383034	4.62989087032619	4.64809068467968	-0.0480958769125282	0.90038251743602	0.963086977653908
Merged-chr6-83159636-4	chr6	83159518	83159718	+	842.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027948, intron 1 of 3)	B2_Mm2|SINE|B2	3214.0	NM_027948	71837.0	Mm.17621	NM_027948	ENSMUSG00000030030	1700003E16Rik	AU041756	RIKEN cDNA 1700003E16 gene	protein-coding	3.78894928025916	3.80399289172855	3.63032834987707	3.31117892628236	3.9140787464346	3.56759981670621	3.37238831165241	4.24204476192164	0.514462203790734	0.34457076550611	0.653022059693258
Merged-chr8-83699206-4	chr8	83699087	83699287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177262)	promoter-TSS (NM_177262)	-8.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	5.70914661293262	5.39359327586207	5.65849181651652	5.39605244247878	6.01323426809895	5.93457895950446	5.97161575758373	5.84936668110646	0.686364073786258	0.00741525755011948	0.0634845582342981
Merged-chr18-88971692-4	chr18	88971595	88971795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175542)	promoter-TSS (NM_175542)	-95.0	NM_175542	246102.0	Mm.772	NM_175542	ENSMUSG00000023066	Rttn	4921538A15Rik|AI666264|C530033I08Rik|D230040K24	rotatin	protein-coding	6.98504770986007	6.83017054556799	6.71728933474918	7.11286454461515	7.08016832032268	7.12452966815643	7.55329776667838	6.88883193379684	0.350970054293857	0.118875962283792	0.381405098913593
Merged-chr3-18641883-4	chr3	18641794	18641994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-161417.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	6.23434658208583	5.85953482957909	6.68826560680207	7.1384311515844	6.29144911805572	6.04552040826642	6.5818729617586	6.50210376600671	-0.311414005377396	0.331422566790759	0.642595594824424
Merged-chr6-127561314-4	chr6	127561229	127561429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16646.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	6.02517334887918	5.74060265016659	6.2172365805742	5.86538098152622	5.78469392059181	5.54623275355358	5.99538023932291	6.04238068855969	-0.173139980833542	0.518186260312486	0.779362628036693
Merged-chr17-45563836-4	chr17	45563721	45563921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357105)	promoter-TSS (NM_001357105)	-115.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	7.90746189469692	8.22124884510776	7.70454387041734	7.40756804049226	8.06468857980565	8.18399343137816	8.31573057709226	7.91067621993759	0.370776380904829	0.0869927403278648	0.321681971208743
Merged-chr10-15154986-3	chr10	15154885	15155085	+	984.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	394696.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	4.78026763964883	4.11836420592261	4.75008083234026	4.98645865311244	3.95949451181817	3.81459833531509	4.09147475344191	3.68721064052092	-2.02009673817596	2.26355466666253e-05	0.000568531816338265
Merged-chr7-45341517-4	chr7	45341405	45341605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029741, intron 25 of 29)	intron (NM_029741, intron 25 of 29)	6236.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	6.85431646912234	7.48949507980704	6.92517071711388	6.91353188774506	7.1219754376629	7.46391747239501	7.11217328315513	6.90665085786771	0.125044110187372	0.593963754446122	0.823228952366238
Merged-chr1-131983140-4	chr1	131983052	131983252	+	722.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145977)	TTS (NM_145977)	12543.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	3.63865342673542	3.62836064547009	3.63917139611792	3.50810772561602	3.57195818194579	3.59214941594113	3.46476332179446	3.4757775399302	-0.226905989635135	0.637881062668532	0.847011595650305
Merged-chr3-103140239-3	chr3	103140142	103140342	+	900.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356383)	promoter-TSS (NM_001356383)	-84.0	NM_001356383	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	4.02388989664718	4.24898478885921	4.0244874164715	4.15985529407891	3.75029310290383	3.76794987792337	3.91180040967068	3.97475236432037	-0.763003781989028	0.0788480691372512	0.303927581128583
Merged-chr7-83581089-1	chr7	83580989	83581189	+	779.5	f0_c57.idr	Intergenic	Intergenic	-3842.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	2.66222538058985	2.74210204932694	2.66243519467866	2.84186787713067	3.27696073627654	3.07585147769682	3.69093514236782	3.41222432842634	2.6474991170316	0.000229342825803426	0.00407092094709777
Merged-chr19-3768869-4	chr19	3768781	3768981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167889, intron 2 of 10)	CpG-7172	1460.0	NM_001167885	225888.0	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	8.12355284856381	8.28477769440585	7.70414219786269	7.7966362121664	7.80696313626542	8.14110742516315	7.97249109055363	7.58357038466887	-0.138090453514168	0.508889544733598	0.773827521189954
Merged-chr9-31543582-3	chr9	31543466	31543666	+	925.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79328.0	NM_144936	235135.0	Mm.390134	NM_144936	ENSMUSG00000041737	Tmem45b	BC018222	transmembrane protein 45b	protein-coding	3.80181973935141	3.55726538590258	3.45710135158935	3.89271477456989	2.81801190064019	3.32350095736153	3.55053332139313	3.27387895326803	-1.4934349054953	0.0188204804835707	0.12281663225112
Merged-chr7-6940962-4	chr7	6940872	6941072	+	932.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360502, intron 5 of 7)	intron (NM_001360502, intron 5 of 7)	35690.0	NR_036631	116811.0	Mm.381671	NR_036631	ENSMUSG00000108043	Zim3	1700128I23Rik	zinc finger, imprinted 3	ncRNA	4.63801600365354	4.53756457474356	4.6387681207937	4.63338603916524	4.73919273444046	4.65045619480386	4.4135807977723	4.28954695379992	-0.149950413188203	0.681392310939642	0.869377344596917
Merged-chr5-148678753-3	chr5	148678649	148678849	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_3-LTR_MM|LTR|ERVK	-63091.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	3.9628149386671	3.79277598133853	4.03546132543039	2.51365083371613	6.37195911506122	6.21980382796	6.30693668171108	5.85360369519623	5.74525794331164	9.01547504421158e-08	3.88916665558749e-06
Merged-chr11-106135319-4	chr11	106135214	106135414	+	976.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 6 of 15)	intron (NM_011947, intron 6 of 15)	24613.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	5.54653300746541	5.13628904177972	4.85533447847203	5.56325748566687	5.62758689590583	5.34115695828784	5.38631951941494	5.49170293453691	0.261551426211679	0.416117896975056	0.710072021761014
Merged-chr6-99401445-3	chr6	99401344	99401544	+	980.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053202, intron 1 of 18)	intron (NM_053202, intron 1 of 18)	33901.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	2.86650980115017	2.99604730151958	3.43348437057078	3.58841657173935	3.38094270253077	3.25944337411488	3.4190910772135	3.32517442863765	0.293381820547483	0.644236342378164	0.850115841644303
Merged-chr4-59440163-4	chr4	59440043	59440243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1510.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	7.31419471100445	7.10289036289038	7.47250849372513	7.49585405980425	6.7336092451611	7.00596342201671	6.63972091983444	6.66900085709328	-0.819176474843937	6.97023758705941e-05	0.00149618377928016
Merged-chr9-40797256-4	chr9	40797242	40797442	+	869.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTC)n|Simple_repeat|Simple_repeat	-3931.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	3.15838579993657	2.94281302330412	3.04766451695813	3.20545200158026	2.85972962418432	3.09682602339625	2.78408368184603	2.85927359230497	-0.84259935769299	0.167799392555468	0.459695448875569
Merged-chr11-96404507-1	chr11	96404407	96404607	+	925.0	f0_balb.idr	Intergenic	Intergenic	38749.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	3.223019723517	3.44732700612394	3.69029311346364	3.93265355430794	2.76274324578833	3.13473487896164	3.01318488882318	3.22178654487622	-2.27655852745026	0.000629866247562386	0.00927456550170523
Merged-chr15-30610832-4	chr15	30610744	30610944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-428282.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	7.78580808208267	7.8170698824619	7.95495070820476	8.11839482303594	8.29599642496026	8.18161764145815	8.31038975317357	8.34922304386523	0.44974965664161	0.00688917880092396	0.0602093638384112
Merged-chr6-148578281-1	chr6	148578181	148578381	+	1000.0	f0_c57.idr	Intergenic	MLT2B2|LTR|ERVL	36028.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	5.02318629883648	4.60294909748548	4.81396022452448	4.56488081635155	4.86194622175996	4.98888950071629	5.23199074334063	4.9879351959953	0.549781942545708	0.104694905565857	0.355792727776183
Merged-chr6-33837033-4	chr6	33836915	33837115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 12 of 17)	intron (NM_009148, intron 12 of 17)	-192433.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	6.51429970411404	6.44754454274274	6.69821608920251	6.03973974696292	6.61426995097911	6.60702040633271	6.46569307216504	6.55901486526283	0.201267278848837	0.401384188597272	0.698997508383657
Merged-chr2-167931601-3	chr2	167931488	167931688	+	938.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011201)	promoter-TSS (NM_011201)	-739.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	3.91881136617649	4.01418570741373	3.77429369524041	3.40647418204343	3.94426643880899	3.78670990529085	3.53862048104564	3.66557687579941	-0.123524847140288	0.807305797126637	0.925729780371477
Merged-chr4-134117179-4	chr4	134117058	134117258	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026257, intron 8 of 14)	intron (NM_026257, intron 8 of 14)	11595.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	5.14021594264139	5.10816613966139	4.96980955328516	4.94401130430773	6.71473486413292	6.78386085448697	6.45222329455671	6.08000875806463	2.42614208850153	2.35590036930738e-18	6.32794839195964e-16
Merged-chr1-105746697-4	chr1	105746577	105746777	+	948.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173187, intron 26 of 28)	intron (NM_173187, intron 26 of 28)	-34046.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	4.99224068155922	4.73857695905326	5.1211975493319	5.11053345058394	5.05739190632939	4.86760160082796	4.71037741085671	5.02293047877042	-0.150283977882583	0.648992575892429	0.852504153384524
Merged-chr14-122181615-4	chr14	122181508	122181708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029556)	promoter-TSS (NM_029556)	-86.0	NM_029556	69634.0	Mm.34608	NM_029556	ENSMUSG00000025545	Clybl	0610033J05Rik|2310014M14Rik|AI256068|Clb	citrate lyase beta like	protein-coding	8.21098827051295	8.20350082171907	8.347216192725	8.67385468731027	8.18911239498554	7.98750768997692	8.49990171344995	7.76270501625022	-0.303938440314352	0.149965140536099	0.432360854406563
Merged-chr17-29399380-4	chr17	29399284	29399484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38470.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	6.14291734070072	6.91528733158301	6.714093040447	6.36299231379431	6.57834628657042	6.75436905770643	6.92509466985186	6.28788815481527	0.130172329805477	0.623102319155162	0.838884054759699
Merged-chr3-31135643-3	chr3	31135457	31135657	+	716.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14363.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	3.09766019385648	2.77385549604157	2.91909936829407	2.94974160672438	3.05192015124795	3.02697048301529	2.97098912900304	3.09637022574701	0.414982676074168	0.476727173555153	0.753110052062842
Merged-chr11-55468764-4	chr11	55468643	55468843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1009.0	NM_013716	27041.0	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	6.13677063746142	6.25658305136332	5.93800535830318	5.84587743404159	6.29146757759684	6.63606945446143	6.22337654382446	6.25098664174212	0.477187612279935	0.0519489251098552	0.23727364863927
Merged-chr12-84801783-4	chr12	84801635	84801835	+	847.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 16 of 34)	intron (NM_013589, intron 16 of 34)	28465.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	4.13371954684365	4.57374971518756	4.2280036159104	4.04287959070928	4.20279912972661	4.35486451238218	4.25320090516573	4.03109290747842	-0.0995521316232755	0.811532240819937	0.927072821617165
Merged-chr1-171845639-4	chr1	171845528	171845728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	5931.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	6.62772062261028	6.26178925404271	6.11725603440201	6.38516872803345	5.61970744457435	5.60898339687187	5.43185178972587	5.77510747776502	-1.18749247397681	4.61476824592094e-06	0.000138188720646364
Merged-chr13-55182748-4	chr13	55182632	55182832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27050.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	5.53969677503735	5.58093035585707	5.57077266995456	4.91118515162981	6.07510326360326	6.7034543663651	6.21626596507456	6.42326840743603	1.53978435905142	2.36704398759533e-07	9.37583884212844e-06
Merged-chr3-108591917-2	chr3	108591817	108592017	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001358055, exon 1 of 15)	5' UTR (NM_001358055, exon 1 of 15)	184.0	NM_001358055	99512.0	Mm.285968	NM_181400	ENSMUSG00000040389	Wdr47	1810073M12Rik|AA552998|mKIAA0893	WD repeat domain 47	protein-coding	3.65753166355739	3.70779455191018	3.90947656310462	3.73281924406726	3.43467726780495	3.98445543626798	3.69739062776626	3.81245113455459	-0.0450184369329689	0.925444853911189	0.972503515835845
Merged-chr9-13575130-4	chr9	13574995	13575195	+	802.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-44894.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	4.05771927509381	4.13694837137507	3.81779700176689	3.84985120054151	3.66286506833611	3.64027601036305	4.04004925217921	3.96508265858836	-0.375216793193612	0.416207691524771	0.710097010427652
Merged-chr6-124921758-4	chr6	124921660	124921860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152158, intron 1 of 1)	7SLRNA|srpRNA|srpRNA	-3814.0	NM_026988	69202.0	Mm.142187	NM_026988	ENSMUSG00000030122	Ptms	2610009E16Rik	parathymosin	protein-coding	6.6666832720734	6.63080617475049	6.47636044832336	6.50556989569315	6.65261036935066	6.63551838445892	6.60406215031475	6.45439466995548	0.0343739771108499	0.867740733714541	0.950434211754337
Merged-chr1-134719892-4	chr1	134719803	134720003	+	931.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355726, intron 1 of 8)	intron (NM_001355726, intron 1 of 8)	10603.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	5.32294372992511	4.86297864504809	4.55773355359735	4.80467307277341	5.1500940808627	5.02954475874055	5.07013252440528	4.88832668650621	0.258853709827437	0.454110060165091	0.737970319006644
Merged-chr4-148500344-3	chr4	148500263	148500463	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039554)	promoter-TSS (NM_001039554)	99.0	NM_001039554	654812.0	Mm.388929	NM_001039554	ENSMUSG00000028989	Angptl7	-	angiopoietin-like 7	protein-coding	4.21903015063725	4.33588539918485	4.64192911347999	4.73958767919093	3.87372887977001	4.09423885852806	3.89788511616143	3.91096277637107	-1.46723562917854	0.00067355490154922	0.00980228262878183
Merged-chr9-14066964-4	chr9	14066868	14067068	+	890.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44-int|LTR|ERVK	-209333.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	4.88079909580638	4.67905590679346	4.23617589753035	3.69497623791517	4.70528575869025	4.26289982806304	4.26549014837647	4.45908387779092	-0.0222413729412878	0.96352390914255	0.986968281921325
Merged-chr3-158031757-4	chr3	158031645	158031845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001093753)	promoter-TSS (NM_001093753)	27.0	NM_001356997	69207.0	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	7.33756947059561	7.5152775056664	7.48676256528252	7.570757692809	7.42226017436252	7.45153608368073	7.64663065717473	7.4048508953518	-0.00438282733128967	0.980191250906526	0.99281244474172
Merged-chr8-25609205-4	chr8	25609112	25609312	+	947.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001735, intron 1 of 9)	intron (NM_001001735, intron 1 of 9)	6928.0	NM_001308482	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	4.36523669558545	4.51806574421227	3.99190224839883	4.54868889001303	5.08201892129641	4.58721842759518	4.67103113108419	4.49589106133678	0.772871151119309	0.0576721909941968	0.252068780036244
Merged-chr13-91371052-4	chr13	91370934	91371134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045161, exon 3 of 3)	non-coding (NR_045161, exon 3 of 3)	17051.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	6.76961733786819	6.78905236425171	6.79841732540716	6.91745965215736	6.49144607100417	6.66755444345016	6.5732937956557	6.39545973124116	-0.422950903667687	0.037592978566203	0.193760363603459
Merged-chr4-118366384-3	chr4	118366289	118366489	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198170, intron 65 of 71)	intron (NM_198170, intron 65 of 71)	6390.0	NR_003946	68180.0	Mm.193212	NM_026601	ENSMUSG00000006395	Hyi	2700033B16Rik|6430559E15Rik|HT036	hydroxypyruvate isomerase (putative)	protein-coding	4.77951546044137	5.13944637883354	5.07202550082929	4.77874288250955	3.63630781942589	3.78968995992721	3.78750571005965	3.92910329831502	-3.11898452969454	5.96453915127906e-11	4.7344704632577e-09
Merged-chr13-30604102-4	chr13	30603997	30604197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10946.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	5.87012184186985	5.94768379581508	6.15681119267113	6.10126231933127	5.7514143762632	5.61849444239593	5.84122712714806	5.4348541250777	-0.571815712482385	0.0270679639257448	0.156499927241539
Merged-chr4-154025992-4	chr4	154025886	154026086	+	976.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163722)	promoter-TSS (NM_001163722)	58.0	NM_001163722	68859.0	Mm.477488	NM_001033144	ENSMUSG00000078350	Smim1	0610011H04Rik|1190007F08Rik|2700009I11Rik	small integral membrane protein 1	protein-coding	4.62706834340263	4.31926785760326	4.37649639541699	4.75745125523877	4.44284786453697	4.59630339837542	4.60609443958705	4.66218439540609	0.0566435629247865	0.879472991852432	0.954865172516716
Merged-chr2-166012466-4	chr2	166012343	166012543	+	925.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	19806.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	4.55333853608104	4.08266455182938	4.91818932751714	4.40675787896758	4.41844685259976	4.33064416943904	4.18477814042569	4.47188470759579	-0.365828644077713	0.380548446749131	0.682955113054781
Merged-chr14-103826131-4	chr14	103826035	103826235	+	886.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276296, intron 1 of 7)	intron (NM_001276296, intron 1 of 7)	17566.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	4.33913248383719	4.12043656691696	4.42393987739803	4.41755173227878	4.4140711838276	4.05916323522507	4.72153484582696	4.1997465530189	0.102622725413254	0.802732333080541	0.923936032101707
Merged-chr5-86078920-4	chr5	86078889	86079089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310639, intron 2 of 7)	intron (NM_001310639, intron 2 of 7)	7243.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	7.88656500022403	7.60763656745279	8.06590125130917	8.15209204115444	8.32995033271975	8.43992384755597	8.57993263763734	8.51207762992962	0.65762307806867	0.000318916192885107	0.0053261698013536
Merged-chr5-117149224-1	chr5	117149124	117149324	+	588.0	f0_balb.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	15636.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	2.76954208343277	2.79096181257877	2.48679655644069	2.99857870500247	2.7498313236927	2.93859648532696	2.82198447987489	2.8306574774177	0.231600548399316	0.732454839299205	0.893963778565797
Merged-chr2-28514675-4	chr2	28514559	28514759	+	842.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009058, intron 1 of 17)	intron (NM_009058, intron 1 of 17)	1492.0	NM_001145834	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	3.73225020024365	3.79118958067909	4.29959068871085	3.5756036732409	4.21260684112098	4.54051550903097	3.59637463659461	3.78838167687189	0.555650211482329	0.294242960938154	0.606535224072776
Merged-chr3-144232143-4	chr3	144232037	144232237	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26882.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	5.48770734902451	5.36972335974517	5.09588494473804	5.3243494483511	5.14572828635979	5.34042928426482	5.55996057186311	5.05662390251276	-0.0759906640158354	0.802764242762088	0.923936032101707
Merged-chr10-128335759-3	chr10	128335661	128335861	+	857.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1966.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	3.48997125580905	3.72101840419096	3.49042269685338	3.35384030543712	3.55659918569935	3.77219553734958	3.63866846203912	3.65175224312318	0.45028422368692	0.35409243824097	0.660844428578464
Merged-chr13-24393173-4	chr13	24392923	24393123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284519, intron 2 of 17)	intron (NM_001284519, intron 2 of 17)	-22099.0	NM_007717	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	3.10570868276518	2.95008703024513	3.28900965875175	2.89292864929542	3.34756332366165	3.404353678786	3.57482983552453	3.28717400174552	1.3265472953617	0.0166299386681774	0.112851788012413
Merged-chr15-99265846-3	chr15	99265741	99265941	+	871.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13880.0	NM_016766	51812.0	Mm.383472	NM_016766	ENSMUSG00000037570	Mcrs1	C78274|ICP22BP|MSP58|P78	microspherule protein 1	protein-coding	3.49584350837326	3.48220411803448	3.86623733498076	3.59529750889212	3.58724827642764	3.84051106664405	3.48362762857719	4.07416410924226	0.443301317698217	0.377057615442112	0.679698728905285
Merged-chr12-111599712-3	chr12	111599628	111599828	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021516, intron 2 of 16)	intron (NM_021516, intron 2 of 16)	25218.0	NM_022801	17169.0	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	3.69501647744169	3.93123713936262	3.23855745056636	2.88820259308402	4.44324135246164	3.97889498654285	3.67993526489153	3.898839659692	1.48619703789741	0.0164356346967929	0.111975043083882
Merged-chr3-146616735-4	chr3	146616625	146616825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009474, intron 4 of 7)	MLT1J1|LTR|ERVL-MaLR	-1127.0	NM_019957	56629.0	Mm.25853	NM_019957	ENSMUSG00000028185	Dnase2b	AI526873|Dlad|DnaseIIb	deoxyribonuclease II beta	protein-coding	7.41436125774703	7.54888248383378	7.46898974257362	7.49985190352864	6.48714416334574	6.72698921891736	6.74335297773034	6.40890576227504	-1.23625956241881	2.10561827586604e-10	1.53561273829784e-08
Merged-chr4-98922319-3	chr4	98922203	98922403	+	750.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1507.0	NM_001301414	230484.0	Mm.371692	NM_146144	ENSMUSG00000028560	Usp1	-	ubiquitin specific peptidase 1	protein-coding	3.25153662514884	3.0327884137901	3.30666700354512	3.04109750002817	3.25504016711545	3.11629056368211	3.06225639099154	3.40733845595482	0.24343598701602	0.664163723737156	0.860892763519835
Merged-chr6-72380464-4	chr6	72380349	72380549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080742)	promoter-TSS (NM_001080742)	19.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	6.35085549716321	6.33387711477214	6.73335308792178	6.34006273120375	6.52391885819297	6.56488983369728	6.37371653939741	6.56808234639146	0.100484410584647	0.65178931260008	0.854186462869977
Merged-chr8-95807593-4	chr8	95807477	95807677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178078)	promoter-TSS (NM_178078)	-115.0	NM_001205226	234594.0	Mm.259220	NM_153164	ENSMUSG00000036550	Cnot1	6030411K04Rik|AA815922|D830048B13	CCR4-NOT transcription complex, subunit 1	protein-coding	8.75955861670994	8.86057206828616	8.75256207809962	8.83433632092268	8.81628727498203	9.03524775262694	8.80962131786211	8.6511235739382	0.0373194398287416	0.805970870101571	0.925320965969831
Merged-chr18-6241964-4	chr18	6241872	6242072	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008448)	promoter-TSS (NM_008448)	-448.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	5.8146227888926	5.80606161476882	5.20120857159278	5.57102351063606	5.38779953812823	5.19844891160638	5.45066530784019	5.16290656287543	-0.542775374042201	0.0725010803401835	0.289479687975202
Merged-chr3-144198704-4	chr3	144198608	144198808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161769, intron 2 of 4)	CpG	3624.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	6.47470472894541	6.11470500860017	5.9268874545769	6.04807121534674	6.04345435534004	5.82227738561133	6.2197376147517	5.67117894249664	-0.301926261174799	0.261388674907418	0.573293822445797
Merged-chr3-85604568-4	chr3	85604462	85604662	+	866.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144896, exon 4 of 13)	exon (NM_144896, exon 4 of 13)	30433.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	3.70442235384476	3.71946496892156	3.916057358184	4.17773087206669	3.72153109978605	3.76449777445827	4.1195640275986	4.00744122869416	0.00177835846404315	0.997020815417843	0.998845087483662
Merged-chr12-78918405-4	chr12	78918312	78918512	+	965.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11474.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	4.90655673339322	5.20143168371886	4.17937244460351	5.00350167283417	5.09995603603126	4.77113631066176	4.91775324317228	4.75645501588952	0.0339903456535474	0.931998518745613	0.975424341903512
Merged-chr1-72412891-4	chr1	72412767	72412967	+	932.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105446.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	4.00100884975017	3.99310555568511	4.4894349185181	4.1659438154793	4.56617303177494	4.50125715351324	4.13564749449604	4.19787966505882	0.478482706623187	0.253814608501704	0.565065370278456
Merged-chr4-131874087-4	chr4	131873983	131874183	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020587, intron 1 of 5)	CpG	444.0	NM_020587	57317.0	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	5.27321243742366	5.22450472469148	5.02963314897772	5.42104092439574	5.63710039594203	5.73018451955961	5.39688771363417	5.42025002405213	0.516722658048192	0.0768855788471303	0.299715677956916
Merged-chr12-111574439-4	chr12	111574349	111574549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045295)	promoter-TSS (NR_045295)	-47.0	NR_045295	100504687.0	Mm.26072	NR_045295	ENSMUSG00000096995	2810029C07Rik	AU017849	RIKEN cDNA 2810029C07 gene	ncRNA	7.74420919783864	7.66339818330072	7.1690539018335	7.51025882764006	7.74331409581467	7.73180349796004	7.47187674522897	7.4944104078278	0.104247980761223	0.598592272478563	0.825987886019831
Merged-chr4-133633557-4	chr4	133633457	133633657	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001017968)	promoter-TSS (NM_001017968)	-128.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	5.64309870119985	5.52055570673816	5.13977925920088	5.45546023466594	5.15351905475748	5.17320497299016	5.27496107606324	5.17021302098024	-0.473650184241643	0.107804367484811	0.36217525242844
Merged-chr4-53012068-7	chr4	53011971	53012171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025623, intron 1 of 5)	CpG	191.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	7.5831071179479	8.02097390200911	8.06691371170275	7.43398341642442	7.1800476659389	7.71718801294583	7.20669273633447	7.42008160243413	-0.535609087827902	0.0190232673033151	0.123680776706491
Merged-chr19-16038033-3	chr19	16037944	16038144	+	826.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52969.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	3.83131543504044	3.41663168146879	3.37774600231983	3.86516277808313	3.38760997019434	3.29440266117318	3.30470456867789	3.59772114870196	-0.825655102317636	0.127671538641971	0.397568009677132
Merged-chr3-31328007-4	chr3	31327902	31328102	+	924.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17683.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	5.0533799926218	4.85263492320219	5.14494682887268	5.00179816222493	4.80682939711334	5.0598449196941	4.44842984082859	4.69090348051995	-0.496158879565787	0.149525663773137	0.431777928290641
Merged-chr14-54387890-3	chr14	54387762	54387962	+	856.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	21610.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	3.56249169935648	3.96225674859406	4.32962959714645	4.23948105093806	2.93810906026888	3.11732625881013	3.48979907025837	3.23549176231713	-3.14572180640992	2.68124375427795e-06	8.54289387581694e-05
Merged-chr6-8663138-3	chr6	8663026	8663226	+	778.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252266, intron 7 of 11)	intron (NM_001252266, intron 7 of 11)	95332.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	3.76468284932871	4.02093605711852	3.96131951558704	4.1700004270175	3.51801318539828	3.93763604585676	3.58290920558958	3.59404919993999	-0.999345608686878	0.0373818232233215	0.192960399712849
Merged-chr4-134854345-3	chr4	134854243	134854443	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355501)	promoter-TSS (NM_001355501)	-998.0	NM_025382	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	5.85490401565019	6.06294087958424	5.92647257794297	5.60113279739744	6.14293570833501	6.329713381462	6.02571069267788	5.89918676741021	0.396305632181366	0.124985172456004	0.392392360190804
Merged-chr9-57510910-4	chr9	57510818	57511018	+	800.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	6816.0	NM_133982	102614.0	Mm.274421	NM_133982	ENSMUSG00000062309	Rpp25	AI851155	ribonuclease P/MRP 25 subunit	protein-coding	3.63687432524186	3.65483360171961	3.57969876123461	4.00151026503941	3.717225960041	3.91632451140571	3.9226971456926	3.8920167820266	0.323317093546621	0.499191046713858	0.768207716806231
Merged-chr15-25413650-4	chr15	25413532	25413732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027376)	promoter-TSS (NR_027376)	132.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	5.82552924539756	5.61608732045113	6.18927021068194	5.7420656563417	5.62230443770567	5.95383808888075	5.64917518739613	5.6998520574425	-0.195494063908831	0.475689432798051	0.752457845618304
Merged-chr12-8537287-3	chr12	8537226	8537426	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001286385)	TTS (NM_001286385)	2240.0	NM_001038660	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	3.83556672743304	3.92166070136789	3.56575823841345	3.68974119618571	3.67813074270019	3.79890910791005	3.8671774480079	3.83385519291364	0.103055686908513	0.821785939964309	0.931891561451028
Merged-chr15-93270468-4	chr15	93270376	93270576	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346785, intron 1 of 7)	intron (NM_001346785, intron 1 of 7)	4703.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	4.81642814881369	5.16712933702645	4.99776045624711	5.00451978255799	5.0765801885908	4.87262072366437	4.86931167152248	4.88926976905366	-0.132527661892418	0.678413558659045	0.868082022970718
Merged-chr4-59040678-3	chr4	59040636	59040836	+	973.095215	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025277, intron 2 of 2)	intron (NM_025277, intron 2 of 2)	5580.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	4.46762137511785	4.22055066619098	4.68117954087184	4.16330714206014	3.11624198845473	3.59241148003241	3.30920202505581	3.23896547480032	-3.90802236915886	6.14422350618495e-09	3.41138599802448e-07
Merged-chr16-58501194-6	chr16	58501108	58501308	+	912.422241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	L1_Mus4|LINE|L1	22218.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	4.12588013012026	4.33513885960807	4.22009385155452	4.05159802484048	4.1487462894444	4.39161828378241	4.06003603181804	4.38606444402798	0.173651646898152	0.666231073171265	0.861914264044268
Merged-chr8-36248117-7	chr8	36248009	36248209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081150, intron 1 of 11)	CpG	1407.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	6.32914089941933	6.63090088683519	6.60729717079645	6.38640696282292	6.69884414381631	6.66990811416354	6.54224219466648	6.76276028487417	0.264606803896496	0.211400983042549	0.516008044030918
Merged-chr19-5751922-4	chr19	5751812	5752012	+	921.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008520, intron 16 of 27)	intron (NM_008520, intron 16 of 27)	11008.0	NM_008520	16998.0	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	4.68443613013704	4.74127006490592	4.40565424774992	4.34529349455982	4.36149125881176	4.66413584093445	4.47152684354423	4.48908746442829	-0.115676060074444	0.75830328830083	0.905063463252088
Merged-chr3-116865577-4	chr3	116865480	116865680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009146, intron 1 of 16)	(TCTG)n|Simple_repeat|Simple_repeat	3900.0	NM_009146	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	6.53090105548287	6.69091639227414	6.4639823381456	6.35114235599654	6.65043496286653	6.84859732532071	6.53123239381219	6.68290663481584	0.251429913710489	0.241321548769961	0.55188287450279
Merged-chr5-23419414-3	chr5	23419302	23419502	+	655.6190190000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14951.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	3.68897194402911	3.55394283732606	3.83855110697787	3.75661927722981	3.66535504983775	3.75280826961833	3.67474165061116	3.73897610064074	-0.026605849619898	0.953921032380336	0.983588513160575
Merged-chr8-80952470-4	chr8	80952358	80952558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62448.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	7.87173234640312	8.08675971889118	7.88771200938272	7.72356152948635	8.01508665896127	8.07244013614044	7.71141952819269	7.87508747959791	0.0427595251771372	0.810695769522964	0.926854276252049
Merged-chr7-143021538-4	chr7	143021432	143021632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_110354)	TTS (NR_110354)	15873.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	5.34970969810997	6.23708873430108	5.25431418263494	5.04190630884521	5.99143142931536	5.52618287116095	5.49856932385251	5.54958074461071	0.169896896574138	0.652842852268432	0.854764223296605
Merged-chr9-20643742-2	chr9	20643642	20643842	+	739.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013911)	promoter-TSS (NM_013911)	406.0	NM_025401	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	3.10391468261477	3.19378249999164	3.58377933636114	3.29358041468792	3.41401696786951	3.42050063448984	3.29268256759874	4.00308185003321	0.857019966407829	0.13131021004897	0.403424095350294
Merged-chr17-34850304-4	chr17	34850208	34850408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045864)	promoter-TSS (NM_001045864)	-83.0	NM_138580	27632.0	Mm.653	NM_138580	ENSMUSG00000024369	Nelfe	D17H6S45|NELF-E|RD|Rdbp	negative elongation factor complex member E, Rdbp	protein-coding	8.38788882232434	8.51038697270655	7.73252884693933	7.97874173157954	8.14648987597612	8.25883974271153	8.00328450910459	7.93189917145997	-0.124029294068138	0.558505170815048	0.803221456639207
Merged-chr18-65924860-2	chr18	65924760	65924960	+	745.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14229.0	NM_013833	19434.0	Mm.431047	NM_013833	ENSMUSG00000024518	Rax	7530406A22Rik|E130303K03Rik|Rx|ey-1|ey1	retina and anterior neural fold homeobox	protein-coding	3.45803203397824	3.17508026937519	3.34519953301368	2.94042459913472	3.63372646175483	3.57576969314029	3.44430190624883	3.50959780279016	1.11494504364925	0.0392855249875887	0.199489520153125
Merged-chr14-19415802-4	chr14	19415708	19415908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	186779.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	8.02301130408515	7.1008311084472	8.08277331652126	8.74724070957434	7.74469828158436	7.81662446870975	7.68777390772783	8.67157139763937	-0.081929468953139	0.872723636740458	0.952272557441005
Merged-chr11-82099412-3	chr11	82099322	82099522	+	909.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-2423.0	NM_011331	20293.0	Mm.867	NM_011331	ENSMUSG00000035352	Ccl12	MCP-5|Scya12	chemokine (C-C motif) ligand 12	protein-coding	3.86086169551462	4.17734543930268	3.86139804364228	4.07606725002019	4.41021581492825	3.87136283187616	3.68001209546775	3.74980021712937	-0.0716985266528766	0.883799432630742	0.956344438085205
Merged-chr9-64925937-4	chr9	64925826	64926026	+	826.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144813, intron 9 of 9)	intron (NM_144813, intron 9 of 9)	25681.0	NM_144813	214111.0	Mm.156124	NM_144813	ENSMUSG00000034452	Slc24a1	-	solute carrier family 24 (sodium/potassium/calcium exchanger), member 1	protein-coding	3.76046726203589	3.96092745044692	3.91483489672903	4.13568456311766	3.90897813258222	3.87952744658783	3.79914331082114	3.75894165318817	-0.348329167476482	0.436397631139224	0.72511335456143
Merged-chr17-80775391-4	chr17	80775297	80775497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA9|LINE|L1	-47372.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	7.25936538671006	7.4157537209785	7.42731490725767	7.37090571281315	7.50367596677831	7.66160242235422	7.35100081120236	7.77644033167406	0.278704796459056	0.12827086687883	0.398524313992502
Merged-chr19-11231466-4	chr19	11231366	11231566	+	930.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045317, intron 1 of 2)	intron (NR_045317, intron 1 of 2)	34649.0	NR_045317	75138.0	Mm.490787	NR_045317	ENSMUSG00000097091	4930526L06Rik	-	RIKEN cDNA 4930526L06 gene	ncRNA	4.86243201188395	4.70611237184076	4.8967634617181	4.49046874503519	4.74229506012467	4.89203941696698	4.57882985928699	4.51071920677679	-0.090169826578156	0.801672530941469	0.923501741084705
Merged-chr7-88251694-4	chr7	88251575	88251775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26410.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.41303109500404	6.82594908617009	7.22965865940021	6.67859821629921	6.21370950308683	6.61044943131579	6.67579776250228	6.66056363076341	-0.388391667101625	0.127730871423622	0.397662410753708
Merged-chr11-75324623-4	chr11	75324530	75324730	+	858.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026653, intron 5 of 16)	Lx8|LINE|L1	23753.0	NM_001164223	68275.0	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	4.16421633351937	4.34042701042434	4.06351042326316	3.89022958091155	4.53287850314635	4.29177283087288	4.32664770595761	4.60969907832365	0.823806458487483	0.0396093764083981	0.200480395603596
Merged-chr12-87330470-1	chr12	87330370	87330570	+	563.0	f0_c57.idr	intron (NM_011479, intron 9 of 11)	intron (NM_011479, intron 9 of 11)	-30765.0	NM_001290302	217738.0	Mm.219363	NM_001290302	ENSMUSG00000050671	Ism2	Gm264|Thsd3	isthmin 2	protein-coding	3.36907517421195	2.97982270339488	3.25395180101956	3.59188327009126	3.39262267812829	3.36569870824436	3.46105672459557	3.3113140015339	0.185675507176579	0.74428490333743	0.899239415948819
Merged-chr14-20294647-4	chr14	20294527	20294727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359868)	promoter-TSS (NM_001359868)	-63.0	NM_001359870	67725.0	Mm.317636	NM_026341	ENSMUSG00000021809	Nudt13	4933433B15Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 13	protein-coding	7.45304524028163	7.70460310184141	7.11246272286445	7.00280787469241	7.46800781683168	7.58372371844208	7.5072480280738	7.00524703264989	0.0891569098097539	0.704471243373762	0.88127019884038
Merged-chr1-46905893-4	chr1	46905793	46905993	+	985.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356417, intron 1 of 10)	intron (NM_001356417, intron 1 of 10)	19883.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	5.01141933217816	5.19834540015575	4.89450799157413	5.86472826831363	5.47357168814518	5.39476635224661	5.25604855054139	5.11677165475017	-0.0161753941857405	0.964902061249326	0.987587193973107
Merged-chr5-122343127-3	chr5	122343035	122343235	+	786.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144912, intron 5 of 10)	intron (NM_144912, intron 5 of 10)	11060.0	NM_144912	231724.0	Mm.255587	NM_144912	ENSMUSG00000038569	Rad9b	A630082N15Rik|BC021784	RAD9 checkpoint clamp component B	protein-coding	3.35353753839306	3.17925791918275	3.13208751143141	3.46579979888505	3.06381532844121	2.89445913477102	2.99583997727841	3.35205271902673	-0.809194539229211	0.175657564550708	0.470484658030286
Merged-chr14-56813711-4	chr14	56813597	56813797	+	943.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152252, exon 1 of 1)	non-coding (NR_152252, exon 1 of 1)	1708.0	NR_152252	100503842.0	Mm.297636	NR_152252	ENSMUSG00000100017	2410022M11Rik	-	RIKEN cDNA 2410022M11 gene	ncRNA	4.35510533961904	4.90928482949556	4.49782107179752	4.29132812494195	4.89805495183245	4.91509526270842	4.7562635590807	4.84617096636546	0.694436202335254	0.0580337757636259	0.252987881251784
Merged-chr4-45981215-4	chr4	45981104	45981304	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355189, intron 1 of 16)	intron (NM_001355189, intron 1 of 16)	8373.0	NM_001355189	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	5.63805105701699	5.77429228489751	5.26352182298936	5.5225158431624	4.89104340587275	5.12695461998749	5.03652412801483	5.16265462904927	-0.939755900195723	0.0019875100365654	0.0232694826128011
Merged-chr11-23971191-4	chr11	23971090	23971290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75920.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	6.27109874452657	6.02689130522057	6.46224002922012	6.46219709883717	6.33869506176823	6.24709514103871	5.99505431668755	6.15057904452325	-0.195581622129343	0.418537797887156	0.7119563597125
Merged-chr3-119772968-4	chr3	119772877	119773077	+	835.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310711, intron 2 of 13)	intron (NM_001310711, intron 2 of 13)	10411.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	3.84811217497964	3.84700008901004	4.09915125699733	3.92383542651838	3.82824313894359	4.26969676493349	4.28799821226768	4.0966042646127	0.51353573958112	0.236261685243099	0.546286073736959
Merged-chr10-44459468-4	chr10	44459452	44459652	+	973.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007548)	promoter-TSS (NM_007548)	-804.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.78597687772964	4.2414104733379	4.98202882417511	5.17824098559968	4.31664208308707	4.40521507656676	4.40305938634362	4.74786438968343	-0.81084487660289	0.0510866087673959	0.23461473162491
Merged-chr4-36183930-4	chr4	36183841	36184041	+	935.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 4 of 8)	intron (NM_001166000, intron 4 of 8)	-338737.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	5.02588327053229	5.00121882242418	5.15507451104671	5.48896920886348	4.68832424194055	4.85962654221087	4.96838501408555	4.95399903936086	-0.658601943257531	0.0493263960505541	0.229762682054996
Merged-chr18-34856397-4	chr18	34856296	34856496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4811.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	7.80398914866661	8.06729244557492	7.85162000670973	8.24518540306769	8.02778420756822	7.78640025049841	8.27723167294894	7.97629930663229	0.0212744829730521	0.911608431827927	0.966971601135236
Merged-chr4-115828031-4	chr4	115827937	115828137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175308)	promoter-TSS (NM_175308)	-55.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	6.38788292277707	6.33126982725332	6.23784625386449	6.25767695149537	6.65237503243144	6.24483217173522	6.66826855538373	6.59674253730771	0.379269812426417	0.0858366915599026	0.31914802907137
Merged-chr17-36231615-4	chr17	36231544	36231744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	26202.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	6.19241042182682	6.14508015593519	6.1518068039619	5.87842614925959	6.39726658426339	6.66084053709069	6.53047965289579	6.88069313310198	0.805983164001416	0.000623785741107002	0.0092136221760231
Merged-chr4-126967919-2	chr4	126967819	126968019	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357201)	promoter-TSS (NM_001357201)	4.0	NM_001357201	67785.0	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	4.22440590560879	4.24020738703454	4.17909923891391	3.91967249181857	4.35041380951454	4.35175607742108	4.25024364419941	4.2667327036891	0.439324941048572	0.267561524434391	0.579225825141073
Merged-chr4-136602778-4	chr4	136602680	136602880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347221)	promoter-TSS (NM_001347221)	-57.0	NM_001347221	99982.0	Mm.28540	NM_133872	ENSMUSG00000036940	Kdm1a	1810043O07Rik|AA408884|Aof2|D4Ertd478e|Kdm1|Lsd1|mKIAA0601	lysine (K)-specific demethylase 1A	protein-coding	6.7968920030373	6.75015896381297	6.43099573144305	6.24343864631519	6.3302678850802	6.62527732179317	6.60912020105017	6.59247955519707	-0.0358400132028013	0.881021574164152	0.955322489265647
Merged-chr2-71744983-4	chr2	71744878	71745078	+	957.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	25561.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	5.41920258546195	4.79767589725616	5.67738898272733	5.91172823240502	4.79662460944217	4.30283942685349	4.89293701355618	4.91345086417979	-1.46107949261913	0.00029962539707364	0.00506700787320139
Merged-chr12-100885773-3	chr12	100885669	100885869	+	756.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177674, intron 2 of 2)	intron (NM_001177674, intron 2 of 2)	13755.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	3.51041871642539	3.6445864372077	3.51088269924807	3.68339280168054	3.52315700098162	3.31579455568883	3.74033722235944	3.33499189940752	-0.338352182369256	0.507926253600127	0.773146987545967
Merged-chr4-6441996-4	chr4	6441934	6442134	+	679.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	12237.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	3.83326833237953	3.19618374250042	3.22436875007149	3.59560594927802	3.84490223733993	3.59613993467235	3.57689263813033	3.69181472867016	0.602568681564214	0.265494957276001	0.577154640086122
Merged-chr4-155116713-3	chr4	155116614	155116814	+	963.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356327, intron 10 of 12)	intron (NM_001356327, intron 10 of 12)	30110.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	4.68593588631026	4.30300563815827	4.72158266531083	5.07410339907066	4.12017982319348	3.93874064685944	4.59182823474264	4.2205314871086	-1.1412435415989	0.00907452614788633	0.0735332077277324
Merged-chr19-46606978-2	chr19	46606881	46607081	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	7875.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	2.89896507487148	2.88250915744189	3.10349360638886	2.6888125234963	3.70643921958796	3.28041643495259	3.21126324989373	3.38481990081655	2.12162796590472	0.000351146440433317	0.00576563585976292
Merged-chr2-166228612-3	chr2	166228499	166228699	+	819.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45309.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	3.26438539671009	3.04813773645126	3.14936900371934	3.2819234685111	3.26677603450607	3.31932521264672	3.13834638569686	3.14782758128906	0.10072023028859	0.853789574304864	0.944905950148447
Merged-chr10-80751689-4	chr10	80751566	80751766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2D|LTR|ERVL	-3537.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	8.56620111196252	8.86396451418582	8.40805363238008	8.08441939239433	8.64535971327014	8.7266569440402	8.64825218041095	8.3865444867782	0.126672554227808	0.528615132293835	0.785158259471775
Merged-chr12-3745941-3	chr12	3745826	3746026	+	965.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-61054.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	4.27900967525218	4.54214728424883	4.40840482126998	4.40835859911066	4.8152296980066	4.1006947041761	3.96078795299149	3.9740347421221	-0.299708082707791	0.519021213742443	0.779808147186772
Merged-chr11-117654714-4	chr11	117654637	117654837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 1 of 21)	CpG	448.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	8.04152445097752	7.7392135968111	7.4203579729122	7.31536718928245	7.96306515547039	8.07373076129129	7.75535271277869	7.77247973661092	0.319640769246445	0.135681346180571	0.410053288073261
Merged-chr8-69791275-4	chr8	69791180	69791380	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133224, exon 1 of 26)	exon (NM_133224, exon 1 of 26)	117.0	NM_133224	170759.0	Mm.186066	NM_133224	ENSMUSG00000031862	Atp13a1	Atp13a|Cgi152|catp	ATPase type 13A1	protein-coding	5.42494762990254	5.43833287482198	5.16121059202061	5.07550384857259	5.39966904105072	5.00739844882048	5.10313728191301	5.15768581832831	-0.159793465902364	0.609092144321546	0.83089280248568
Merged-chr12-5119895-4	chr12	5119807	5120007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 5 of 13)	intron (NM_001164493, intron 5 of 13)	202554.0	NM_001362349	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	6.59724378134481	6.8302699664147	6.51410321403789	7.21141657234335	6.79438240819314	6.50178961500943	7.38758629444512	6.96428041890431	0.171273639538964	0.529892062676489	0.786020363222879
Merged-chr7-129401465-4	chr7	129401367	129401567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144373.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	5.96502067717097	5.57689483949716	5.92189220475292	6.01260921049572	5.87685306101821	5.64795629691035	5.99868933373913	6.28488354489197	0.138160825186192	0.612010264910329	0.832680684364583
Merged-chr16-50437926-4	chr16	50437842	50438042	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-5476.0	NM_001347240	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	5.2714025405109	5.55352322011653	5.51414772728374	5.77504714150731	5.72487251518311	5.198089312869	5.4865038226291	5.71308010187287	-0.000950532657633213	0.997462008840638	0.998991886373499
Merged-chr7-30626153-4	chr7	30626044	30626244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025628)	promoter-TSS (NM_025628)	7.0	NM_025628	110323.0	Mm.400	NM_025628	ENSMUSG00000036751	Cox6b1	2010000G05Rik|Cox6b	cytochrome c oxidase, subunit VIb polypeptide 1	protein-coding	6.64067024623234	6.49600010770987	6.12914678001915	6.39828476030357	6.34945920289923	6.1704962490408	6.7184069297582	6.38042749697697	-0.0114333568705096	0.962234728583833	0.986445813830347
Merged-chr5-117486281-4	chr5	117486155	117486355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	72253.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	6.53569334419551	6.78782057007441	6.47044479806408	6.42905428671943	6.48218293024411	6.25252116926463	6.3854140707372	6.72635110453196	-0.122260708234218	0.59293195986639	0.822423445862576
Merged-chr5-110232465-3	chr5	110232361	110232561	+	766.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027922, intron 1 of 12)	Lx5b|LINE|L1	1457.0	NM_027922	71782.0	Mm.288442	NM_027922	ENSMUSG00000029501	Ankle2	1110001J12Rik|AI661024|D5Ertd585e	ankyrin repeat and LEM domain containing 2	protein-coding	3.74249182322064	3.4192608884715	3.44864434929254	3.6876305022082	3.31500453760978	3.31788625555958	3.26043888900587	3.39040735708903	-0.925543674554764	0.0768744188995202	0.299715677956916
Merged-chr11-113172650-1	chr11	113172550	113172750	+	1000.0	f0_c57.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	29188.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	2.81504207466106	2.87444172458438	2.89225596677307	2.58906513831498	3.57169872766262	3.21781821871632	3.69151054892288	3.48831517179375	3.05695403744311	4.41654707207906e-07	1.65542603498428e-05
Merged-chr12-98734652-4	chr12	98734536	98734736	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011877)	promoter-TSS (NM_011877)	9.0	NM_011877	24000.0	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	5.72953997903553	5.22637692765406	5.63655884126465	5.72307988403449	5.52218854642163	5.20150380874841	5.50699130116702	5.09359297742019	-0.42612513975215	0.16214706988782	0.45122118081163
Merged-chr4-133469258-3	chr4	133469138	133469338	+	735.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10895.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	3.47032603967809	3.14215137518184	3.52096732353395	3.2599180062502	3.59224170551105	3.08861424143845	3.17498917852954	3.41667786219858	-0.0333925245651728	0.953131675652804	0.983320469096829
Merged-chr10-118611228-4	chr10	118611129	118611329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54704.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	5.47521415089424	5.59244625565806	6.13416878082546	5.73814869478833	5.48357378298147	5.71440124465391	6.12062967380273	5.99477543730362	0.144227550597637	0.629763315847727	0.84238669232566
Merged-chr4-124741885-4	chr4	124741824	124742024	+	919.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126474)	promoter-TSS (NR_126474)	74.0	NR_126474	16330.0	Mm.296202	NM_008385	ENSMUSG00000028894	Inpp5b	5PTase|AW260155|INPP5P	inositol polyphosphate-5-phosphatase B	protein-coding	3.79617608825915	4.16849297069547	3.79668988706241	3.85687466604069	3.75307928977288	4.07484665273167	4.02851240626345	4.08844376697352	0.196988777653745	0.658528960736869	0.857904281262009
Merged-chr14-44989288-4	chr14	44989067	44989267	+	906.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008964, exon 1 of 2)	exon (NM_008964, exon 1 of 2)	1056.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	3.31998386668383	3.51110732900861	3.49816529099873	3.46669368723039	3.48287813494239	3.72166576519705	3.68636836666884	3.43973972935781	0.429478007222479	0.38356307313879	0.685436870350881
Merged-chr2-38211642-4	chr2	38211543	38211743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 2 of 21)	ORR1F|LTR|ERVL-MaLR	75741.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	6.88484562595872	7.38781531853312	6.87238409023174	6.76672355789972	7.16648479002479	6.96452480236787	7.10731252092206	6.55770651454904	-0.0332414523705663	0.890715038916493	0.959104227034594
Merged-chr4-129884270-3	chr4	129884187	129884387	+	751.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21939.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	4.07983463056113	3.82938562702367	3.89803191247881	3.59359763024875	3.81631913388261	3.96936981656181	3.83203164268173	3.895709657848	0.0878571920214162	0.847317137086808	0.942260706909278
Merged-chr9-88966284-4	chr9	88966163	88966363	+	872.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	9343.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	4.03693233515233	4.53065388469976	4.93210768103176	3.56784129075101	4.41366178157813	4.27452253602441	4.52063736322704	4.37782799534918	0.0656147122803262	0.897027914433948	0.9615041483224
Merged-chr1-159231651-1	chr1	159231551	159231751	+	1000.0	f0_c57.idr	promoter-TSS (NM_001360878)	promoter-TSS (NM_001360878)	-549.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	4.19727044386853	3.89094468826285	4.37558353032297	3.69101661638171	4.50552179171955	4.50635768343483	4.27019521254322	4.59965856402973	1.05481768579433	0.0139345907109123	0.0996867588262076
Merged-chr1-172364814-4	chr1	172364686	172364886	+	993.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	-11745.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	4.43100581674083	4.7152486898405	4.56753032480134	4.74291263874083	4.93357059598838	4.86350588747031	4.62936076175688	4.93495904428661	0.450636053369673	0.19226396830214	0.491824448203475
Merged-chr10-62486927-4	chr10	62486819	62487019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133672)	promoter-TSS (NM_133672)	-114.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	7.8638080507292	8.22019846462836	7.43478491620301	7.39008902449595	8.18622453550169	8.33332010107161	8.05664534172957	7.74307238302969	0.422722382678317	0.0747662698179607	0.294884929316375
Merged-chr11-96837566-3	chr11	96837466	96837666	+	731.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7598.0	NM_008686	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	2.62718739808607	2.56272458458322	2.7052046662227	2.41923905756207	3.22980908007144	3.15663342385724	3.0275497458502	3.48509966775021	3.21230896232019	1.24048832870593e-06	4.25936897004147e-05
Merged-chr9-52287563-3	chr9	52287454	52287654	+	856.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119443.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	3.37685986997672	3.4752629139874	3.659817060655	3.59429111236331	3.67034946434942	3.72481289772843	3.69383396229368	3.55211942345301	0.398816174894931	0.405078599654774	0.702085545628266
Merged-chr18-61707667-4	chr18	61707557	61707757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172832)	promoter-TSS (NM_172832)	-22.0	NM_172832	240334.0	Mm.234457	NM_172832	ENSMUSG00000024579	Pcyox1l	BC060677|C630049M13	prenylcysteine oxidase 1 like	protein-coding	6.0475385403376	6.45695624258243	6.02645925254166	6.63179261504595	6.05145660059205	6.01280290252873	6.32588442128348	5.92958822376168	-0.378613842597671	0.154447471968839	0.439771846038484
Merged-chr10-8070281-4	chr10	8070178	8070378	+	820.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114155.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	3.62516783656881	3.68781055790715	3.62563592213161	3.90349856657814	3.62057861248815	3.85474550894554	3.91392127885244	3.97331269687591	0.325581749681353	0.489074018003017	0.761571656414145
Merged-chr16-57363163-4	chr16	57363060	57363260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	RMER17B2|LTR|ERVK	9883.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	5.06370654588346	5.36179293715518	5.06454939100596	5.11479335062777	5.13472441042184	5.24074899386762	5.35042447442864	5.52954046053426	0.290719216855658	0.334172799022493	0.644805241742718
Merged-chr15-86213363-6	chr15	86213216	86213416	+	964.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1143.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	3.67734872546249	3.63922435557552	3.88345865437601	3.75450948170873	3.41515276975697	4.0528977933317	3.86644557138175	3.88107955837928	0.21889959086827	0.652758603295903	0.854764223296605
Merged-chr7-113369895-4	chr7	113369789	113369989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133700)	promoter-TSS (NM_133700)	-550.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	5.90075447923689	5.45939992902963	5.5029407774354	5.32490117753509	5.307020226221	5.64976600502787	5.44755730236597	5.44264322082125	-0.156332951528306	0.596872888853946	0.824985875654518
Merged-chr16-76341887-4	chr16	76341783	76341983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358238, intron 2 of 3)	RMER15-int|LTR|ERVL	31166.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	6.72854331670933	6.88317574098408	6.35877944487948	6.72277957035785	7.00184398528815	6.87657959958259	6.8459754636846	6.39279428606917	0.160694871046099	0.493673902295086	0.764438087754564
Merged-chr5-99204364-2	chr5	99204264	99204464	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48563.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.42457363864897	3.24182560707188	3.10373676018975	3.08104465857914	3.3341495779081	3.0845022378014	2.89905135326126	2.97463861068348	-0.47809616810255	0.426991296998629	0.718234557355738
Merged-chr1-180884488-4	chr1	180884420	180884620	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-8588.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	4.3359220548434	4.50209068519219	4.87809341160762	4.37541262568764	4.66750650511755	4.64766449743238	4.53627588254262	4.55437851971834	0.167112199669728	0.652495461561551	0.854687108944502
Merged-chr5-120605864-4	chr5	120605781	120605981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029408, intron 4 of 4)	intron (NM_029408, intron 4 of 4)	6708.0	NM_029096	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	5.51980600261616	5.33372488896645	5.01838984060925	5.33287416743301	5.40919652227372	5.55749840095119	5.29840555951355	5.46397553048446	0.209206568000455	0.46982838131885	0.748648947719156
Merged-chr7-97425017-4	chr7	97424933	97425133	+	787.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7483.0	NM_009381	21835.0	Mm.28585	NM_009381	ENSMUSG00000035686	Thrsp	S14|SPOT14	thyroid hormone responsive	protein-coding	3.78369565295432	3.48393190976849	3.33661289659653	3.56781378056815	3.85979585812052	4.20403287050199	4.3622664354797	4.19836438300862	1.71400445003739	0.0003558025919701	0.00583003515051559
Merged-chr17-25829012-4	chr17	25829003	25829203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028101)	promoter-TSS (NM_028101)	60.0	NM_028101	72106.0	Mm.277599	NM_028101	ENSMUSG00000025736	Jmjd8	2610003J06Rik	jumonji domain containing 8	protein-coding	4.55160208880082	4.24548923691459	4.38918039882182	4.13850099286335	4.80346325843867	4.42766833459265	4.45271431574696	4.3422201167087	0.474760433753607	0.225097838322412	0.533502988868384
Merged-chr3-88531790-4	chr3	88531698	88531898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029890)	promoter-TSS (NM_001029890)	-597.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	5.64939183218766	5.36173214414214	5.60242097477062	5.26251946895607	5.35978757795171	5.37960387107698	4.92106100634931	5.49668753534896	-0.280077759465493	0.363886943561147	0.668881769380959
Merged-chr1-191325848-4	chr1	191325748	191325948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025864)	promoter-TSS (NM_025864)	-117.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	7.784150916785	7.92671958785393	7.77744081141704	7.94733746932582	8.26391434353917	8.23581163267251	8.36133262022204	7.86521714303406	0.426480698060889	0.016166842091712	0.110467471752517
Merged-chr8-128654417-7	chr8	128654336	128654536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31218.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	6.64655093612963	6.57033377382601	7.15577572294225	6.69989116533352	6.81520960358909	7.08424460638737	7.10908717312228	6.77971273448493	0.237073790529529	0.294500581284071	0.60669911675381
Merged-chr10-70195517-4	chr10	70195411	70195611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR25A|LTR|ERVK	-9153.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	6.42210923249999	6.4867060400728	6.50690985199693	6.65205581981647	6.30144260765271	6.19783211090212	6.53647594450077	6.25254475708048	-0.296239048555055	0.179652142424543	0.475868597135452
Merged-chr12-111676562-4	chr12	111676468	111676668	+	932.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1537.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	4.63580759162371	4.49932369649643	4.09191175717507	4.45931398724571	4.59756740956128	4.65152287438543	4.57738869412061	4.47632352075193	0.310695412733524	0.40467023678544	0.701732715768529
Merged-chr10-37197042-3	chr10	37196961	37197161	+	857.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-58135.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	3.7505391723038	3.3308304975865	3.61157176691836	3.56459965156386	3.28596357232507	3.10419940995935	3.54649353321372	3.4527125211633	-0.729583755266391	0.178563289139511	0.474376007078761
Merged-chr2-120314120-2	chr2	120314020	120314220	+	729.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024145)	promoter-TSS (NM_001024145)	45.0	NM_001024145	271844.0	Mm.24880	NM_001024145	ENSMUSG00000046971	Pla2g4f	4732472I07Rik|Gm647|Pla2zeta	phospholipase A2, group IVF	protein-coding	3.02915183147804	3.09590508537493	2.96053697545578	2.67115149909643	3.25465299095663	3.82436295152257	3.08367260653054	3.15618031991994	1.60628002810884	0.00950342230454155	0.0760818913749818
Merged-chr3-126599606-4	chr3	126599499	126599699	+	676.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	2648.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	3.56919251804282	3.60052640924014	3.56963298071007	4.17668958222246	3.93430591530858	3.49118705978482	3.96001872643752	3.93107077715029	0.197151526101305	0.710886893595352	0.884240356833917
Merged-chr17-31047796-3	chr17	31047692	31047892	+	842.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-9902.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	3.61942718455314	3.61883480673593	3.5100991423316	3.93699757405937	3.57396494951849	3.73644170966102	3.49713995657641	3.38860145000168	-0.449900383606738	0.374433829216443	0.677784078373359
Merged-chr10-125324716-4	chr10	125324630	125324830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 1 of 5)	MLT1B-int|LTR|ERVL-MaLR	4233.0	NM_011391	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	6.39886932648332	5.830530647348	6.46506615038801	6.35744378611875	6.11704099277749	5.91402260269384	6.20791372908951	6.36158966430887	-0.190022551735986	0.462312912631496	0.74386208255792
Merged-chr9-103111785-1	chr9	103111685	103111885	+	1000.0	f0_c57.idr	promoter-TSS (NM_173781)	promoter-TSS (NM_173781)	-289.0	NM_173781	270192.0	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	3.33481197047331	3.2337012410737	3.49256006512698	3.23847266927531	4.82356810470723	4.58332822566873	4.53034066101181	4.88599976306482	3.91258261137492	4.65703798568714e-13	5.3482480480947e-11
Merged-chr11-120064187-3	chr11	120064120	120064320	+	775.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009734)	TTS (NM_009734)	-17075.0	NM_007377	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	3.24173451393874	3.18927105568204	3.24212613920941	3.35723304372526	3.51187630474389	3.35323944260886	3.34428737597762	3.35542599798803	0.465934856831375	0.370595370740821	0.674834554323746
Merged-chr11-97440265-5	chr11	97440179	97440379	+	807.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9881.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	3.18999314490354	3.08241185701	3.30038020998785	3.1661283162655	3.27763791939854	3.04420879847162	3.17861800343246	3.18875272784843	-0.0162635709744981	0.976372808539018	0.991537706656775
Merged-chr9-78191924-4	chr9	78191831	78192031	+	835.770813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010357)	promoter-TSS (NM_010357)	-35.0	NM_010357	14860.0	Mm.2662	NM_010357	ENSMUSG00000032348	Gsta4	GST5.7|mGsta4	glutathione S-transferase, alpha 4	protein-coding	4.10255764079983	3.9383822548441	3.95353575378948	3.94434382728382	4.17704322846837	4.52544236043108	4.13103035760694	4.05275991640854	0.639408805104082	0.122349697130087	0.387588637323531
Merged-chr6-48086649-4	chr6	48086548	48086748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347142)	promoter-TSS (NM_001347142)	-55.0	NM_001362062	69228.0	Mm.207555	NM_001163475	ENSMUSG00000057691	Zfp746	2810407L07Rik|AI317225|Znf746	zinc finger protein 746	protein-coding	7.67340014600079	7.30332428277432	7.38859719500877	7.45706685491835	7.34074015328445	7.55559590354008	7.52925227728049	7.54368934966741	0.0390527616383652	0.830457553741461	0.934997048219198
Merged-chr12-36155596-2	chr12	36155492	36155692	+	638.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025840, intron 1 of 11)	intron (NM_025840, intron 1 of 11)	1233.0	NM_025840	66912.0	Mm.288669	NM_025840	ENSMUSG00000020547	Bzw2	1110001I24Rik|Bdm2|HSPC028	basic leucine zipper and W2 domains 2	protein-coding	2.12080889136686	2.13966555036718	2.3358475843587	2.0681856273683	2.30257474453936	2.44056596755827	2.39102993106497	2.39907193450481	1.37644479412188	0.0636126551695577	0.267811272390959
Merged-chr10-59323267-4	chr10	59323156	59323356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316371)	promoter-TSS (NM_001316371)	-40.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	8.65014534206181	8.9329763911388	8.77909677119659	8.45383637406788	8.65783535106032	8.6200204227478	8.79461190328967	8.73246225059179	-0.0109095325394942	0.947685576101333	0.981348536548879
Merged-chr4-6383622-4	chr4	6383518	6383718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016807, intron 4 of 8)	RLTR49|LTR|ERVK	17938.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	8.84762189262227	8.83945006675162	8.8489981206782	8.76450899095713	8.70052781453692	8.69415335691511	8.70527270901592	8.49076771072028	-0.214625543665889	0.137566229083713	0.412622999157398
Merged-chr19-47882697-4	chr19	47882596	47882796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030051, intron 7 of 8)	intron (NM_030051, intron 7 of 8)	16902.0	NM_026619	68214.0	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	5.71736567895149	5.6053560530358	5.33786782240998	5.68841857365447	5.9363105242821	5.89406005083135	6.32574920902229	5.58104319314183	0.586476100866495	0.0394952922049119	0.200165115022177
Merged-chr3-109467457-4	chr3	109467289	109467489	+	920.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-106618.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.21597573978122	3.8201639667729	4.34366567633148	4.95969813700533	3.85775433193605	3.72870042689175	3.78700843935295	4.38038759915329	-1.11820198510674	0.0347764390119352	0.184623302512204
Merged-chr1-156533689-4	chr1	156533595	156533795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-25092.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	5.97688915765723	5.56138509461567	5.90881274600508	6.13250088205645	6.33945834615044	6.33971871893751	6.18993156961711	5.9958892951458	0.468257640159709	0.0713619070816182	0.286716481381943
Merged-chr7-142061037-4	chr7	142060943	142061143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028308)	promoter-TSS (NM_028308)	-9.0	NM_028308	101513.0	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	6.89588968385902	6.9265338242411	6.54639313267725	7.18263597889164	7.03623402552445	6.87285500941972	7.08045782187952	6.73665837503232	0.0261032838233777	0.9072963255899	0.965654111556545
Merged-chr17-12880355-4	chr17	12880256	12880456	+	844.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4322.0	NM_030726	80978.0	Mm.160368	NM_030726	ENSMUSG00000059408	Mrgprh	Gpr90|Mgrb|MrgH	MAS-related GPR, member H	protein-coding	4.21916902585012	3.96387272007205	4.08143146244828	4.03470297723289	3.98140088420825	4.20629027211166	4.36285058568231	4.30159838533445	0.360181101842723	0.379006898771833	0.68153833836951
Merged-chr2-11332138-3	chr2	11332070	11332270	+	925.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7319.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	3.52416041700733	3.19785171378126	3.52468601525324	3.33349312730393	3.36284471156344	3.30107559325193	3.40855242758416	3.05451391075428	-0.377383971657797	0.490555826230056	0.76225273216969
Merged-chr11-106032097-4	chr11	106031995	106032195	+	846.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037712, intron 12 of 12)	IAPEz-int|LTR|ERVK	-4777.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	2.93994119094454	3.71465879858261	4.23485511871667	2.43634462353857	3.29219431893589	3.6827487855446	3.69628613033478	3.4981160502933	-0.00448814313133432	0.997915251834938	0.99906319748704
Merged-chr12-73963727-4	chr12	73963630	73963830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178392)	promoter-TSS (NM_178392)	-800.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	6.27808547595191	6.43541545768817	6.05529875986833	6.5422834428541	6.3686839187796	6.33820558272348	6.11000265100115	5.98243831265786	-0.211380968693022	0.390116844773258	0.690268641098631
Merged-chr3-108563402-5	chr3	108563239	108563439	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026198)	promoter-TSS (NM_026198)	-873.0	NM_026198	67495.0	Mm.32615	NM_026198	ENSMUSG00000068732	Tmem167b	2010200O16Rik	transmembrane protein 167B	protein-coding	4.3459868471124	4.08641485162236	3.91480184796463	4.11606808141633	4.32373591652553	4.19989350692955	4.40475348281508	4.30252280012405	0.465867460494864	0.241597100859822	0.552100865114873
Merged-chr15-98534343-4	chr15	98534222	98534422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289437)	promoter-TSS (NM_001289437)	-53.0	NR_153345	69612.0	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	7.97729468073935	8.42713497323158	7.89730060430354	8.21276618669657	8.37025991259637	8.30459939958408	8.41058387418983	8.29336442882306	0.247733086549123	0.162074017399531	0.451144248358323
Merged-chr7-29488985-4	chr7	29488890	29489090	+	709.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081028, intron 2 of 22)	Charlie2a|DNA|hAT-Charlie	16470.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	3.80082430707641	4.25980446591576	4.237609752449	3.75114669669027	3.97287585013392	4.18630136468485	4.08969433496125	4.01112634362814	0.106757651434437	0.811488540708593	0.927067536138303
Merged-chr11-20301563-2	chr11	20301463	20301663	+	983.1666869999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_018861)	TTS (NM_018861)	31150.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	2.76622247394073	2.96736247179943	2.83512600915277	2.96467365032867	3.00338016992168	3.07079473132424	3.06658823271505	3.02042336521553	0.615567470389456	0.295288370235595	0.607360011623083
Merged-chr1-165717903-4	chr1	165717800	165718000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9806.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	7.01038900467205	6.73895692885994	7.70497889349661	7.36852796482237	6.58446771260977	6.66962569333545	6.86152099481383	6.3288607386916	-0.88365974971457	0.000787327327323244	0.01109726174882
Merged-chr4-137356927-4	chr4	137356819	137357019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009861, intron 1 of 5)	intron (NM_009861, intron 1 of 5)	840.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	7.05550101981522	7.85856918648903	7.39396336085952	7.37542674528564	7.51812036409616	7.42517063145948	7.24421212978665	7.17445120831373	-0.139911511742947	0.53130583798419	0.787150106804684
Merged-chr1-62720359-4	chr1	62720205	62720405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	16988.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	5.61042304186247	5.98316699956114	5.95863660260387	5.80900721551541	5.8487446632806	6.13282559792449	5.92821584218218	5.86456786964138	0.151830083200687	0.546572462144775	0.796437980727832
Merged-chr19-45591908-4	chr19	45591758	45591958	+	988.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 5 of 8)	intron (NM_013907, intron 5 of 8)	31273.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	5.89270982064383	5.89483622491463	5.38423955742425	5.99964710460631	5.3519243881487	4.83317812037807	4.81285743281561	5.2876264025298	-1.25177903153474	0.000156626032302709	0.00295794225345569
Merged-chr13-60628029-4	chr13	60627912	60628112	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	25801.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	6.069325464174	5.96225530689458	6.88421988155981	6.67592747799864	5.65656385161754	5.48100622945702	5.95321775383004	5.43288104406433	-1.26985398857655	5.14089084778766e-05	0.00115798566346417
Merged-chr6-128651345-2	chr6	128651245	128651445	+	858.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_2-LTR_MM|LTR|ERVK	-11040.0	NM_053165	94071.0	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding	3.05476155482269	3.26244409960502	3.11291163631265	2.73734318431057	2.89950561271808	3.04094000610042	2.98395599129471	2.92998926596184	-0.363410313305263	0.556712739896372	0.80223213104735
Merged-chr15-101262688-4	chr15	101262590	101262790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4156.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	7.67003311368632	7.37797266831316	7.67954960457844	7.6749723842543	7.6719220864705	7.44367570545209	7.87936139949064	7.56301730066585	0.0582796543973824	0.754681628982633	0.903394260200158
Merged-chr10-127030839-4	chr10	127030742	127030942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025537)	promoter-TSS (NM_025537)	-28.0	NM_025537	66399.0	Mm.29900	NM_025537	ENSMUSG00000040521	Tsfm	2310050B20Rik|9430024O13Rik|EF-TS|EF-Tsmt	Ts translation elongation factor, mitochondrial	protein-coding	6.09435200273604	6.06117169818784	5.64481634219826	5.78881555456095	6.14987103953119	6.18770910616388	5.9822582960503	5.89751206718723	0.249054260873033	0.32577971601016	0.637314124113981
Merged-chr14-121879440-2	chr14	121879340	121879540	+	839.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131000)	promoter-TSS (NR_131000)	-32.0	NR_130999	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	2.99208580724322	2.9460666274169	3.2188748718614	2.70953971599889	3.37938860816601	2.9712726679763	2.85371731598776	2.92772125086914	0.346099644750604	0.589417712817945	0.820464677958613
Merged-chr17-10425532-1	chr17	10425432	10425632	+	801.0	f0_balb.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	-30684.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	3.26366998474543	3.29531091601959	3.523912882002	3.572364433444	3.22919851954153	3.0461343844464	3.06910458707585	3.20352434596518	-1.07133451030827	0.0584240574563399	0.254097884986241
Merged-chr1-93119075-4	chr1	93119010	93119210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16130.0	NM_001276710	11611.0	Mm.7457	NM_016702	ENSMUSG00000026272	Agxt	AGT|Agt1|Agxt1|SPT	alanine-glyoxylate aminotransferase	protein-coding	5.58716708679088	5.04470264501425	5.45969445149231	5.65331472350551	5.40197529460281	5.11156218081447	5.34898116025053	5.18566782996055	-0.341045617978134	0.271475298812568	0.583222139604812
Merged-chr5-100038556-4	chr5	100038513	100038713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152866, intron 1 of 8)	CpG	609.0	NM_016690	50926.0	Mm.389579	NM_016690	ENSMUSG00000029328	Hnrnpdl	AA407431|AA959857|D5Ertd650e|D5Wsu145e|Hnrnpdl1|Hnrpdl|JKTBP|hnRNP DL|hnRNP-DL	heterogeneous nuclear ribonucleoprotein D-like	protein-coding	5.67135611574801	6.1018066672426	6.2897870517454	5.88664214828949	6.18244790900987	6.03403648169116	5.98764997950419	6.21360700271146	0.171270133609216	0.502092272371186	0.769457185302407
Merged-chr6-113663500-4	chr6	113663379	113663579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	25012.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	6.79510769676168	6.92034237460511	6.55087845791925	6.63368891370916	6.83082153552644	6.87120188750093	6.70500282420671	6.74898588491375	0.0880476089110798	0.668054970870376	0.862837936034118
Merged-chr4-40948423-4	chr4	40948306	40948506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009736)	promoter-TSS (NM_009736)	-112.0	NM_001171739	12017.0	Mm.688	NM_009736	ENSMUSG00000028416	Bag1	BAG-1|Rap46	BCL2-associated athanogene 1	protein-coding	8.85619393274457	8.91687708601383	8.72284400639795	8.75765222154096	8.78183408994704	9.11450283725787	8.75843334196759	8.78035048625539	0.0626222873775218	0.690876458680412	0.874212066600839
Merged-chr2-160367127-4	chr2	160367013	160367213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010658)	promoter-TSS (NM_010658)	-48.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	8.45135018279374	8.56300009707871	8.64551559002662	8.80587465057305	8.61469064181726	8.73064175068679	8.65411450769261	8.75099191696095	0.0718935982938229	0.644122719299983	0.850082962136934
Merged-chr11-51931395-4	chr11	51931289	51931489	+	989.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-36242.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	5.52834291919405	5.29544665775134	5.36339940539775	5.52833361512755	5.70855566754912	5.12943028992114	5.11293550568038	5.4173772113967	-0.0951180055875261	0.758000134367402	0.904926340425875
Merged-chr8-108691989-4	chr8	108691892	108692092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22652.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	6.73507554299995	6.74900708227973	6.7076558436165	6.35375072028686	6.95302129594091	6.53753173173858	6.40100653313344	6.44715421208267	-0.0256214562599084	0.915708228590393	0.968763998229684
Merged-chr17-53468591-6	chr17	53468494	53468694	+	760.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5273.0	NM_172497	211482.0	Mm.60887	NM_172497	ENSMUSG00000023931	Efhb	4921525D22Rik	EF hand domain family, member B	protein-coding	3.93056788477217	3.73337363538263	4.15436856749354	4.07374183063731	3.73448089441905	3.71757674448109	3.81418767909943	4.15167166134378	-0.338787355243257	0.462370753590597	0.743904700839156
Merged-chr10-82866094-1	chr10	82865994	82866194	+	688.0	f0_c57.idr	promoter-TSS (NM_025499)	promoter-TSS (NM_025499)	-532.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	3.34318619757086	3.00061299710571	3.34359765795844	3.52495631520862	3.83540408037882	3.39464454115822	3.60174386498345	3.66338350562046	1.01645616666473	0.0696760430981122	0.28246672869101
Merged-chr18-60560747-4	chr18	60560644	60560844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025776)	promoter-TSS (NM_025776)	-42.0	NM_025776	66810.0	Mm.275106	NM_025776	ENSMUSG00000024604	Rbm22	8430430L24Rik	RNA binding motif protein 22	protein-coding	6.51733585854135	6.14423642362062	6.34048196363409	6.49472957332468	6.61114420786022	6.86443936655464	6.62564974982189	6.82122348369082	0.495262989546459	0.0241499746638048	0.145048607425108
Merged-chr7-90443710-4	chr7	90443592	90443792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145151, exon 1 of 1)	exon (NM_145151, exon 1 of 1)	911.0	NR_073438	233490.0	Mm.29496	NM_145151	ENSMUSG00000051451	Crebzf	1110034C16Rik|6330417B10Rik|LAZip|LAZipII|SMILE|Zf	CREB/ATF bZIP transcription factor	protein-coding	5.30596525395154	5.03708895082086	5.30687539795883	5.12466407228577	5.29853842598317	5.53551069940796	5.36565891157724	5.14612951570724	0.276970545133119	0.347393407187313	0.655491751191203
Merged-chr4-102567779-5	chr4	102567704	102567904	+	918.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-2256.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	3.67572378520554	3.43991633425339	3.76784687706519	3.39682333044129	3.36549702987393	3.26929770306237	3.28015287650925	3.62567213809231	-0.601049805646575	0.257995054029404	0.569823559230946
Merged-chr13-52085252-4	chr13	52085156	52085356	+	818.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11485.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	3.80166601820109	3.83532029594132	3.57086799059238	3.77625401694578	3.82191449804121	3.8681694004556	4.18784236652581	4.12576088397235	0.709839658309381	0.114234427474029	0.373837784954674
Merged-chr4-129809485-2	chr4	129809437	129809637	+	704.5	f0_c57.idr|f1_balb.idr	Intergenic	RSINE1|SINE|B4	-10942.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	2.53056318385189	2.39358659932549	2.53082176098995	2.17970000409405	2.80207040924894	2.98231793513953	2.91294909498718	3.13393576599043	3.16559891952097	2.16113897416048e-05	0.000545488337027548
Merged-chr6-83637878-4	chr6	83637780	83637980	+	999.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	18236.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	6.50972937304315	6.19928947129321	7.19190355464917	7.28446984628866	6.18285819665058	5.57267974264834	6.63383382343069	6.66335790633784	-0.780354459679119	0.137114668347306	0.411824241716235
Merged-chr1-144335870-4	chr1	144335762	144335962	+	920.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86758.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	4.54299945838712	4.35213890137951	4.50115782727434	4.99654696518533	5.0315549946195	4.16735680696559	4.74997182865304	4.54081477224162	0.0725232475711143	0.86597321535557	0.949769934673472
Merged-chr18-62980643-3	chr18	62980539	62980739	+	769.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028017, intron 2 of 11)	intron (NM_028017, intron 2 of 11)	2723.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	3.16084838490678	3.53348572794381	3.29618414611488	3.25237195571454	3.60106426278672	3.75378111557435	3.51701821657964	3.77320334712537	1.14512513944282	0.0239186149693742	0.144157755707459
Merged-chr19-3706414-4	chr19	3706312	3706512	+	779.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1881.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	3.90443912201501	3.53291377880346	3.40347530889145	3.28132183937261	3.80983059214626	3.58000385023655	3.66292839983483	3.20481658842467	0.132661900190983	0.810917244581299	0.926854276252049
Merged-chr15-58410584-2	chr15	58410477	58410677	+	705.666626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-4891.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	3.02967164697622	3.52721681570419	3.21676531079321	3.20634768236356	3.15338985391966	3.26818608224325	3.14629313352718	3.15585843490274	-0.296122232305712	0.598702190383301	0.826032626658132
Merged-chr5-105059826-2	chr5	105059726	105059926	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6265.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	3.14161850387261	2.92236660465835	3.20315212794872	2.92808708701464	3.10458034799742	3.54009214524412	3.24851079119829	3.46979259036029	1.14258093262964	0.043362837777203	0.211811929051848
Merged-chr4-149780064-6	chr4	149779946	149780146	+	996.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-5779.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	4.25598650597371	4.48871690584899	4.39297812665165	4.65686234180161	4.37818683640509	4.38358447652587	4.49527071878754	4.34643254810861	-0.169268651445775	0.655221945417456	0.85597949624427
Merged-chr6-8495373-4	chr6	8495284	8495484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13777.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	6.19296307352224	6.69247968010592	6.95175399695749	7.38603530844851	6.62389983015195	6.47897798622434	6.57141869589492	6.46596943295127	-0.505651384440716	0.0725459018724971	0.28957743098825
Merged-chr7-120948297-4	chr7	120948219	120948419	+	956.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025298)	TTS (NM_025298)	30575.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	5.03354576548365	5.26653643187267	5.16815426541224	5.47737984145655	5.15471812285091	4.85434484114441	5.11100102826128	5.2855491060251	-0.28320238249633	0.371611633883813	0.675630765982526
Merged-chr15-80043472-1	chr15	80043372	80043572	+	658.666687	f0_balb.idr	Intergenic	Intergenic	-28664.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	3.50876313178333	3.74300661759511	3.9206182844426	3.34568542934739	3.34947223597952	3.25090420820569	3.12854438534732	3.39473400571705	-1.22800542284272	0.0293351568338671	0.164789450578315
Merged-chr2-156111841-4	chr2	156111677	156111877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029397, intron 1 of 2)	CpG	188.0	NM_170598	75710.0	Mm.27660	NM_029397	ENSMUSG00000089824	Rbm12	5730420G12Rik|9430070C08Rik|AI852903|SWAN|mKIAA0765	RNA binding motif protein 12	protein-coding	5.75407894446583	5.68653911280126	5.49663555390395	5.47718213443251	5.48117177417313	5.72740942351138	5.49739224956986	5.81882674602301	0.0541563961443914	0.842451829600294	0.940205423428672
Merged-chr15-80619981-4	chr15	80619881	80620081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289442, intron 1 of 7)	AmnSINE1|SINE|Deu	-3502.0	NM_010815	17444.0	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	5.53187118482411	5.78352134711877	5.58773692088405	5.7168654499247	5.83885675296323	5.59222006573875	5.68643854340732	5.34865964896376	-0.0432950502388235	0.874426056964573	0.952888519377221
Merged-chr7-101321075-1	chr7	101320975	101321175	+	549.0	f0_balb.idr	promoter-TSS (NM_019990)	promoter-TSS (NM_019990)	-38.0	NM_019990	56018.0	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	3.14631312947916	2.93255456131662	3.20372198777451	3.03436580907548	3.11991826995214	3.19735681248503	3.13493867964134	3.20196147482474	0.334846542379556	0.545392828821086	0.795910121223087
Merged-chr1-57606492-3	chr1	57606378	57606578	+	889.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11D|LTR|ERVK	-168383.0	NM_144882	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	3.24663539201495	3.31608276922204	3.74658410459965	3.7812423839457	3.13255201323234	3.77015883053138	3.58529864953343	3.49088679587645	-0.126175109391133	0.825946881724492	0.933190575949898
Merged-chr5-100526340-4	chr5	100526257	100526457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359204, intron 2 of 10)	intron (NM_001359204, intron 2 of 10)	8048.0	NM_001359204	26891.0	Mm.957	NM_012001	ENSMUSG00000035297	Cops4	AW208976|D5Ertd774e|SGN4	COP9 signalosome subunit 4	protein-coding	6.69336454660202	7.09823205131755	6.89183269121246	6.78301817667971	6.61174922768338	6.88619374724414	6.89529370685871	6.5789111371271	-0.182250030090553	0.395257133941708	0.694152665601698
Merged-chr10-62504068-4	chr10	62503971	62504171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	3686.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	7.35546587459663	7.63609607529519	7.15738255454452	7.6925912339358	7.40619401850925	7.34693837885955	7.47364792578867	7.37192713907403	-0.120526547031589	0.540842753336721	0.792982745230616
Merged-chr4-106970941-2	chr4	106970848	106971048	+	681.5	f0_balb.idr|f0_c57.idr	intron (NM_001355532, intron 1 of 14)	intron (NM_001355532, intron 1 of 14)	47763.0	NM_001355532	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	3.10049345507898	3.50964989913545	3.16881662745218	3.53449166762785	3.45848007977444	3.34500533519369	3.64391373318704	3.40889773999288	0.386987456992665	0.484715554741298	0.758826587875401
Merged-chr2-157514288-3	chr2	157514168	157514368	+	675.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45810.0	NM_001291129	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	3.31189460754881	3.14291811132131	3.20232994972	3.20534814704581	3.23213179335447	3.12500695700791	3.13247732977275	3.20067603672533	-0.150453982933123	0.781007238996867	0.914773964552732
Merged-chr7-101616660-4	chr7	101616565	101616765	+	918.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-35504.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	4.65882238413619	4.49251761327752	5.03364270107753	4.71857409893532	5.10645146651237	4.20065576258685	4.97878690893118	4.18664777172782	-0.084353802848585	0.850021982303512	0.943377775572077
Merged-chr15-78982913-4	chr15	78982829	78983029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024716)	promoter-TSS (NM_001024716)	-127.0	NM_001024716	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	7.96118074011873	8.09717032725971	8.04291433966336	7.86586115283442	7.99019440065513	8.18086686100569	7.92427163302815	7.55210508890053	-0.0771366391644371	0.681176717962016	0.869167487395749
Merged-chr7-6194295-3	chr7	6194185	6194385	+	948.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2805.0	NM_178028	232836.0	Mm.246599	NM_178028	ENSMUSG00000034660	Galp	-	galanin-like peptide	protein-coding	3.74045784065919	3.50488509473133	3.83894963799702	3.72302351432773	3.60763707749458	3.5080408402653	3.95461200955751	3.78866098890427	0.0555539622986025	0.907863412553395	0.965902974228235
Merged-chr11-87462541-4	chr11	87462445	87462645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	34954.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	5.67217523209847	6.2998291206485	6.25685924484267	5.25714444537936	6.04705584487998	5.93041190789501	6.01940674866673	5.7994062711458	0.0348511061307118	0.914385867247814	0.967966085825669
Merged-chr13-45144150-3	chr13	45144073	45144273	+	855.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-142077.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	3.73089600560933	3.94085569528914	4.08858927965216	3.39818975377606	3.56677436634255	3.49528024111333	3.76573271341413	3.56485659583473	-0.625276528810388	0.228979340721266	0.537900616657055
Merged-chr5-72803043-1	chr5	72802943	72803143	+	865.75	f0_balb.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	-50266.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	4.2407121415016	3.94619639041263	4.1641378983528	4.1341230272366	3.70320528192211	3.74483895098116	3.48737481651688	3.49727498003001	-1.50620618194377	0.00164985669308686	0.0201363425166717
Merged-chr19-24156253-3	chr19	24156145	24156345	+	869.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011597, intron 1 of 22)	intron (NM_011597, intron 1 of 22)	-13163.0	NM_001360391	21873.0	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	3.14233996684742	3.14214325593383	3.2591160701731	3.64609456291219	2.92568190565146	3.19037399338673	3.3000843143873	2.94503426413745	-0.886585756851815	0.148134756191962	0.429756829467605
Merged-chr5-8368180-4	chr5	8368081	8368281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098225)	promoter-TSS (NM_001098225)	-21.0	NM_001310439	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	6.16015612690146	6.2928068450966	6.63555075788152	6.8402752839264	5.76552962105003	5.87734828859145	6.52929438947807	6.00412275442802	-0.671215505734744	0.0205233780879176	0.130233888644012
Merged-chr13-111489322-3	chr13	111489218	111489418	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028487, intron 1 of 12)	CpG	809.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	5.32060862950377	5.1293622570567	5.10071744612538	5.09839082181111	5.4427462287358	5.24172109277969	5.37835268614221	5.16427957953057	0.294512717940313	0.313196534466712	0.625137156187603
Merged-chr4-3835642-4	chr4	3835535	3835735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026147)	promoter-TSS (NM_026147)	20.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	8.27159881846638	8.55355488456047	8.39822008949394	8.25401048572387	8.24390093165521	8.33039540219983	8.23980487186109	8.30141735779442	-0.11978022279184	0.447132007582924	0.732764620286541
Merged-chr5-142424773-3	chr5	142424726	142424926	+	707.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 1 of 8)	intron (NM_199068, intron 1 of 8)	23329.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	3.49494771169646	3.49900412780121	4.16532984132355	3.42138941856655	3.0297257468605	3.436303220559	3.17631210170928	3.25274334150954	-1.5827900001587	0.00804183899300474	0.0674455116864716
Merged-chr5-123675385-4	chr5	123675292	123675492	+	899.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	8969.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	4.60760742317281	4.25299988838313	4.24303329379084	4.26931547062482	4.5218582744116	5.06216769114508	4.89949098435656	4.79020637821712	1.0470510824569	0.00498606253233365	0.047453261798232
Merged-chr3-116808242-4	chr3	116808153	116808353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081326)	promoter-TSS (NM_001081326)	-87.0	NM_001081326	77559.0	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	7.67151620216403	7.61929084078037	7.26147168117823	7.77780706347849	7.79897895076571	7.69970638638078	7.87670353729446	7.83884286117385	0.260471777764225	0.159023676522521	0.446219364628123
Merged-chr6-71494491-2	chr6	71494391	71494591	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001308303, exon 1 of 4)	5' UTR (NM_001308303, exon 1 of 4)	614.0	NM_001308303	22644.0	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	4.67192043830481	4.71428706483226	5.23902775320083	4.73918091196047	4.7314963122571	5.23750175846924	4.42531581123549	5.00016695829506	0.0436896438898157	0.909390249227787	0.966313685692304
Merged-chr12-55495276-4	chr12	55495181	55495381	+	977.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2634.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	5.25129180569783	4.98227520914673	4.81387619884991	4.79812411929891	5.01564492886095	5.17492187182074	5.38479190111141	4.85025849674234	0.299637563659695	0.368679518980185	0.673136834205223
Merged-chr4-35220295-3	chr4	35220239	35220439	+	939.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	intron (NM_001081343, intron 1 of 10)	5541.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	3.48134511898634	3.95370386531007	3.48179726437399	3.24648843281315	3.65789646973815	3.53790278518971	3.57891656089142	3.64377559860097	0.14027459123488	0.789899897887653	0.918708056312353
Merged-chr5-36485449-5	chr5	36485328	36485528	+	846.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025725, exon 1 of 1)	exon (NM_025725, exon 1 of 1)	840.0	NM_025725	66717.0	Mm.42368	NM_025725	ENSMUSG00000050677	Ccdc96	4921513E08Rik	coiled-coil domain containing 96	protein-coding	3.72294445660679	3.53721302464867	3.83065261765229	3.63220352534355	3.8529254224317	3.84424933781152	3.95867870787782	4.33086769854888	0.938097034220194	0.0406866751389564	0.203888823550815
Merged-chr7-135689925-4	chr7	135689847	135690047	+	844.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081117, exon 14 of 14)	3' UTR (NM_001081117, exon 14 of 14)	26432.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	4.14467273706725	3.79533365279811	4.09712109777164	4.01202403763788	4.72388196520082	4.06541937059259	4.52504246500579	3.99280800943839	0.886364466789572	0.0465964165322431	0.221911302846817
Merged-chr11-78497821-4	chr11	78497735	78497935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172795)	promoter-TSS (NM_172795)	-81.0	NM_172795	237868.0	Mm.210332	NM_172795	ENSMUSG00000050132	Sarm1	A830091I15Rik|C78606|MyD885|Sarm	sterile alpha and HEAT/Armadillo motif containing 1	protein-coding	6.75281365345165	6.69042627873189	6.38085173102737	6.34044746336686	6.13532043378048	5.97490797811143	6.07888633559872	6.01658971598757	-0.735033520501751	0.00206064820558017	0.0239234837098338
Merged-chr9-44920920-10	chr9	44920763	44920963	+	998.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013795)	promoter-TSS (NM_013795)	-121.0	NM_013795	27425.0	Mm.14663	NM_013795	ENSMUSG00000038717	Atp5l	4933437C06Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G	protein-coding	4.30342308935874	4.50413979777937	4.78242220731745	4.44779434491296	4.52546314478658	4.38351958613314	4.2369127651187	4.87472576298298	0.0270058589857357	0.945339899019767	0.980464778437826
Merged-chr2-169008878-4	chr2	169008771	169008971	+	849.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30602.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	4.17695664242799	4.49354408822786	4.22694894407376	5.0309923819535	4.18843834469248	4.08433740161879	4.50681797561225	4.31777534419832	-0.622158174448717	0.167477621933192	0.4591314763358
Merged-chr17-63896060-4	chr17	63895967	63896167	+	941.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001286415, exon 2 of 18)	5' UTR (NM_001286415, exon 2 of 18)	18001.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	4.57829965870757	4.48906284661364	4.86902081471198	5.06298984885813	4.24984420947642	4.75260661190267	4.59747408398148	4.20201837257876	-0.699981327580559	0.0813197409831481	0.309417833291006
Merged-chr14-74868772-3	chr14	74868690	74868890	+	747.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	79087.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	3.75341130923139	3.56170509961762	3.80005332126335	3.86527630407309	3.53114559712695	3.2819465342828	3.42344489783834	3.49259412484016	-1.02514428203976	0.0431671075961216	0.211436247700546
Merged-chr16-93816590-4	chr16	93816522	93816722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15499.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	7.99089622956697	8.29528988147613	8.54310145992279	8.49850255215042	8.47049798920343	8.44377568940475	8.63668760120092	8.52345873835882	0.209213295477004	0.237458797294518	0.547644711485644
Merged-chr12-32709589-4	chr12	32709495	32709695	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-110740.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	5.48297399297818	5.72101384948455	5.89064775319522	5.48693761561029	5.53707815857393	5.57243792319959	5.53783208080818	4.96723396841629	-0.376673680789217	0.215083085815089	0.521046864244511
Merged-chr5-113992464-4	chr5	113992352	113992552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198109, intron 1 of 14)	L1MB8|LINE|L1	1305.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	5.88314389302554	5.92717569757982	5.57518099480281	5.91038116567608	6.01415923978436	5.86320557470217	6.02392767369163	5.78515847191815	0.14442724022116	0.566210919023439	0.807835530970224
Merged-chr17-78417777-4	chr17	78417688	78417888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 1 of 9)	CpG	364.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	7.06083864305388	7.07801802863219	7.21542892071564	7.14448334811085	7.29373349242003	7.46772223466891	7.68230302367854	7.14195162753872	0.382468649114331	0.0525494873528276	0.238864490907227
Merged-chr10-26762215-2	chr10	26762115	26762315	+	764.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10297.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	3.58090318688884	3.66350194662968	3.43055798197322	3.28176672386408	3.34079091193037	3.24276466501907	3.12183152620186	3.13020028535697	-0.998491978279258	0.07408729086721	0.293250398992191
Merged-chr2-11375263-4	chr2	11375189	11375389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040615, intron 1 of 2)	intron (NR_040615, intron 1 of 2)	23211.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	6.86938646904725	6.87656430790603	7.00338645429307	7.03889279368664	7.07882247692059	6.96134837478536	7.38997237586823	7.19608617866097	0.290310908044258	0.14092005242763	0.417504616513893
Merged-chr11-103360441-4	chr11	103360335	103360535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183288, exon 3 of 3)	exon (NM_183288, exon 3 of 3)	3257.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	5.84101361507496	5.98702392978157	5.57360214759176	5.75229220610492	5.89936319525671	6.21759597382286	6.33573289365054	5.9534278315026	0.491093795546095	0.0579136628815902	0.252621861469959
Merged-chr14-70791612-1	chr14	70791512	70791712	+	617.0	f0_c57.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	17231.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	2.8178962391874	2.66056502579058	2.73179173299333	2.24799323646197	3.50066945137878	3.55924519568765	3.75216837967356	4.13823731102827	7.05758846585739	1.06827926533577e-13	1.39265659024423e-11
Merged-chr18-4239086-4	chr18	4238988	4239188	+	920.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73256.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	4.21148857265288	3.82363876104687	4.16764908434643	3.99472581124526	4.27820645513773	3.98508790754242	4.4288995292945	4.16507080284082	0.453169748384802	0.279352892135416	0.591495502480744
Merged-chr4-95307302-4	chr4	95307200	95307400	+	983.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-250207.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	5.29288746694469	4.69149659109458	5.32397517864974	5.45927428971989	5.52075725266952	4.86828658892538	5.7616198092292	5.48742019181223	0.393437994297835	0.275531857006851	0.587346352307228
Merged-chr17-31119549-4	chr17	31119421	31119621	+	849.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10090.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	4.09909582344482	3.6054957574669	3.90658061713538	3.42316470727703	3.89508612301793	4.31480726486733	4.2852231853944	4.09710961120326	1.0485897858434	0.0284329768070632	0.161708919623108
Merged-chr7-35140054-4	chr7	35139951	35140151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20758.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	5.83999289068843	5.90635550963255	6.29497127260095	6.66155001715275	6.20844254806031	6.09487320380634	6.18825805694565	6.44395875555376	-0.000335331815104347	0.999057595555142	0.999532836539787
Merged-chr9-46314676-4	chr9	46314581	46314781	+	693.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183104, intron 3 of 12)	intron (NM_183104, intron 3 of 12)	5305.0	NM_183104	74361.0	Mm.159169	NM_183104	ENSMUSG00000056617	4931429L15Rik	-	RIKEN cDNA 4931429L15 gene	protein-coding	3.53506383150895	3.49467422043176	3.1688570733465	3.34522274234239	3.79191122991715	3.41611821353268	3.41143887588822	3.77511854460841	0.739665332010878	0.155488713366328	0.441078077821691
Merged-chr1-136137262-4	chr1	136137200	136137400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	5910.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	7.68134110329377	7.54346043332588	7.73805888319093	7.74670746420117	7.47679932581499	7.37162864819696	7.67695587456047	7.30282810482119	-0.284635526831612	0.112950459862576	0.371444336514893
Merged-chr8-85071679-4	chr8	85071599	85071799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039514)	promoter-TSS (NM_001039514)	-58.0	NM_001039514	330817.0	Mm.193086	NM_201408	ENSMUSG00000060038	Dhps	Dhs	deoxyhypusine synthase	protein-coding	6.42228136843993	6.69624570705523	6.45870447541201	6.57622931903958	6.76076076734277	6.68601365729999	6.46002906133818	6.55460476494418	0.11272340341602	0.596931564101175	0.825000496540423
Merged-chr15-77336567-3	chr15	77336490	77336690	+	573.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29537.0	NM_053104	93686.0	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	3.59968904222172	3.3634434693677	3.32178742028386	3.32064833061856	3.08095761834766	3.66779953209849	3.30973271311376	3.82610969448899	0.323433779431701	0.566276292700013	0.807835530970224
Merged-chr7-16875130-4	chr7	16875030	16875230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081655)	promoter-TSS (NM_001081655)	-187.0	NM_001081655	629378.0	Mm.491123	NM_001081655	ENSMUSG00000078794	Dact3	EG666671|naa-3	dishevelled-binding antagonist of beta-catenin 3	protein-coding	9.40096149020485	9.69308407593273	9.58972391176053	9.40599018748664	9.5949485232213	9.82409576458594	9.75079453814416	9.4745502348729	0.17121871473602	0.268482304161306	0.580131084080006
Merged-chr12-91668730-4	chr12	91668659	91668859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-78272.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	7.96668609133746	8.02157515748844	8.20036964878886	8.03726060167066	7.61860771929042	7.46689445251452	7.76507672741925	7.32875103522283	-0.651387101119704	0.000260181688044578	0.00451694448129878
Merged-chr7-130517154-3	chr7	130517075	130517275	+	892.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271343, intron 1 of 11)	MTD|LTR|ERVL-MaLR	2405.0	NM_001136054	11907.0	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	3.42107316457919	3.53173418736626	3.54751200334424	3.86611243471325	4.00182499896849	3.72378629552291	3.89530345815375	3.99768319829233	0.843363961986572	0.0884616433382217	0.324553006617693
Merged-chr1-92217414-4	chr1	92217310	92217510	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-37069.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	4.84359840133826	5.26232173184779	5.41726285875393	5.09181105391022	5.67594093339922	5.28781104353799	5.2475080771182	5.23925483577212	0.402703880090927	0.204277989807808	0.507479514048931
Merged-chr16-38392330-3	chr16	38392223	38392423	+	848.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30133.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	3.30880285252978	3.1873000540747	3.19946982371193	3.40907418433538	3.22931195477207	2.98147697845613	3.12988308595601	3.07794729158289	-0.667471756309885	0.23862303650986	0.548972916561797
Merged-chr11-53786453-3	chr11	53786313	53786513	+	850.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	MTD|LTR|ERVL-MaLR	15940.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	2.6644721751831	2.65722894344033	2.80150041403487	2.71486486307316	2.8807269616129	3.09386762569943	2.91420053561574	2.9815542758539	1.15699087225135	0.0570748260957879	0.250386998254058
Merged-chr11-97999385-4	chr11	97999260	97999460	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3187.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	5.11051123826623	6.3384774234554	5.36493850623637	4.62936155887627	6.3025218539208	6.00743885544641	5.88915040762451	5.80377592787659	0.761938470375454	0.211984009800967	0.51679483314901
Merged-chr15-35152711-4	chr15	35152613	35152813	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357821, intron 1 of 11)	intron (NM_001357821, intron 1 of 11)	3093.0	NM_001357821	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	5.51391141164023	5.04471413663399	5.43421423914551	6.02503544740004	5.33481492871516	4.98607845227478	5.26094549718054	5.21964620608787	-0.640214975207029	0.0644352483473185	0.269726919672653
Merged-chr11-80172043-4	chr11	80171926	80172126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 7 of 10)	intron (NM_172133, intron 7 of 10)	-11846.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	7.40497307702891	7.2809199100605	7.32896236332652	7.05146157577415	7.34849933836933	7.16469717708525	6.8987241590635	6.92888741426871	-0.213741485075299	0.304063291130747	0.616765580900957
Merged-chr12-35026573-2	chr12	35026473	35026673	+	705.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-20616.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	3.52843082221147	3.24252372773129	3.35505366856606	3.24695746711002	3.42953300694485	3.47133574174583	3.5669333838169	4.01540176803976	0.981700440387686	0.0608890410575408	0.2608028074037
Merged-chr10-68085778-4	chr10	68085670	68085870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106200.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	6.54283077776475	6.44898867225311	6.78096335199197	6.74194341773196	6.43269457923675	6.58281575671829	6.4439898286332	6.66354851232163	-0.162393695530085	0.451032048381478	0.735725036249989
Merged-chr7-101362092-6	chr7	101362004	101362204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	14035.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	5.53840054167093	5.94966685559069	5.95380191515874	5.21900021506574	5.7982809259898	6.12704385761939	5.45297199324153	5.72261940888934	0.175465987029339	0.58069135147267	0.815887200441312
Merged-chr7-133776048-2	chr7	133775948	133776148	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025850)	promoter-TSS (NM_025850)	755.0	NM_001286032	101437.0	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	3.32603976598702	3.56271967782069	3.93274009511469	3.35113995514426	3.42940391196419	3.44162074841358	3.37703988898059	3.80362734791272	-0.11792343726644	0.827427982754681	0.93381914867164
Merged-chr18-44381088-4	chr18	44380992	44381192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027490, intron 1 of 10)	CpG	592.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	5.00484886142597	5.05408871694269	4.96869211559573	5.16372592518912	5.31915476385081	5.34957789318557	5.27136769377311	5.35066048903649	0.480006708961257	0.100453209765055	0.347921492320569
Merged-chr5-16467310-4	chr5	16467212	16467412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-86183.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	7.25339473719917	6.56097375364434	7.53962025207811	7.87002431499241	6.93530357152738	6.99045005496274	7.2601030225322	7.22805761738192	-0.392116857329026	0.160713579818896	0.448974916516709
Merged-chr4-156228887-4	chr4	156228778	156228978	+	847.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008233)	promoter-TSS (NM_001008233)	-336.0	NM_001008233	231002.0	Mm.423124	NM_001008233	ENSMUSG00000078485	Plekhn1	BC025458	pleckstrin homology domain containing, family N member 1	protein-coding	4.10967807911015	3.90206571265207	4.43888185553988	3.97258354521918	5.06807975092762	4.61235075336053	4.41803021976915	4.3502990521501	1.26258401123629	0.00293729575800958	0.0314443938576273
Merged-chr12-99550876-2	chr12	99550776	99550976	+	817.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12965.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	3.3689988882497	3.09304063549815	3.36947423028559	3.02043278540053	3.44964769086079	3.1100259641285	3.35572849275838	3.36755180986316	0.442234153555479	0.425487310066554	0.716992238586874
Merged-chr11-111210716-4	chr11	111210613	111210813	+	959.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144549.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	5.11158556307208	4.87545698518108	5.05400921390601	4.80193376003032	4.57169863260311	4.31854123750589	4.68980618426785	4.70881091495885	-0.785562133103853	0.0264384079929482	0.154200216529831
Merged-chr4-145156181-3	chr4	145156084	145156284	+	682.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001276502, exon 18 of 69)	exon (NM_001276502, exon 18 of 69)	34482.0	NM_001276502	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	3.39497797218795	3.64627782984185	3.26892975036637	3.47194601443319	3.7281280466491	3.44685556863905	3.55060715299163	3.75840564327393	0.562317629073812	0.263385733848586	0.575385145700394
Merged-chr18-35598608-4	chr18	35598491	35598691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357472)	promoter-TSS (NM_001357472)	-26.0	NM_001357470	67869.0	Mm.126534	NM_026420	ENSMUSG00000037058	Paip2	2310050K10Rik|AU045972	polyadenylate-binding protein-interacting protein 2	protein-coding	6.42532300766568	6.55441468025595	5.83327258486249	6.3885470490511	6.67685358808978	6.63734917323653	6.57238875779384	6.75848662112631	0.478036925571744	0.0452619639842819	0.217781172841704
Merged-chr11-19026822-3	chr11	19026709	19026909	+	626.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7840.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	3.36618734552542	3.1924138043386	3.46964958525757	3.2962694991131	2.9304246292901	3.24353137696233	3.35291874790918	3.25292189004869	-0.503572067806354	0.370958526435135	0.675068605253279
Merged-chr14-54377327-4	chr14	54377208	54377408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 6 of 11)	intron (NM_011405, intron 6 of 11)	16467.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	6.84861374935327	6.81607289618525	6.94387533502788	6.73472424676993	5.91269934560507	5.96339747875224	5.7786297506413	5.77614710416932	-1.45820958518622	1.0978958002519e-10	8.32237754697869e-09
Merged-chr1-45865543-4	chr1	45865427	45865627	+	977.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60067.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	5.4076215891101	5.18657123498232	6.00225447049	6.09975855317404	5.56077161185373	5.35747804046538	5.60194048224678	5.2090104676576	-0.504439442072764	0.135690716508962	0.410053288073261
Merged-chr6-87810934-4	chr6	87810828	87811028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	851.0	NM_001039394	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	7.16788431142536	7.37997964546406	6.89308347559215	7.24041596693445	7.64593253234412	7.63019569335614	7.53261074441312	7.59850028404077	0.55294148758226	0.00307721433285455	0.0326233302052806
Merged-chr4-129782430-4	chr4	129782312	129782512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38067.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	6.55767402059905	6.84749618446356	6.38576801428811	6.12293747353423	6.69173522276613	6.87214575262688	6.55706530893216	6.57020160553216	0.265263568440647	0.281824869379712	0.593954970650299
Merged-chr14-65113973-5	chr14	65113804	65114004	+	814.213318	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-15798.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	3.71204005702707	3.42996592177865	3.90050086443137	3.54599350352676	3.55240087460322	3.66654453332374	3.59252515795959	3.9402848140797	0.135355032614943	0.784149991175717	0.915967437099313
Merged-chr15-13370900-1	chr15	13370800	13371000	+	823.0	f0_balb.idr	Intergenic	Intergenic	-197225.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	3.06511057481884	3.15984416312883	3.23509221842827	3.2877889313432	3.29604858456461	3.1116631356668	2.79165854276719	2.79742418497406	-0.663964623257497	0.298902064326341	0.611173193435542
Merged-chr10-19002359-3	chr10	19002226	19002426	+	998.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009397, exon 9 of 9)	3' UTR (NM_009397, exon 9 of 9)	9637.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	3.67799371181035	3.98885973482858	3.34525499397154	2.85639154504233	3.42159190440494	3.75021100469983	3.26913490724756	3.46394636177628	-0.17386179093688	0.783441380682287	0.915649203519514
Merged-chr16-21596613-4	chr16	21596509	21596709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 44 of 46)	intron (NM_001081366, intron 44 of 46)	98056.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	6.22203892461134	6.06949247176876	6.27531558429186	6.29577776030079	5.69162675395472	5.64878539174437	5.75101955016155	5.36374642268908	-0.95551994341503	0.000159046242802745	0.00300125994603833
Merged-chr7-127477983-4	chr7	127477858	127478058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6344.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	8.7681975751349	8.95812048273813	8.88153769569816	8.74856592981816	8.97969476753511	8.87382891865138	9.10859002517443	8.86444099751314	0.151349704174304	0.30906158093768	0.621461643611762
Merged-chr9-107710386-1	chr9	107710286	107710486	+	593.5	f0_balb.idr	promoter-TSS (NM_011349)	promoter-TSS (NM_011349)	89.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	3.51959750680642	3.76610951364941	3.79061992556718	3.60890306009118	3.66485289834613	3.75253478687167	3.77454433209095	3.78837169189404	0.215638668651447	0.639319524766995	0.847559309975212
Merged-chr4-109280871-4	chr4	109280771	109280971	+	875.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007943, intron 1 of 24)	CpG	596.0	NM_007943	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	3.6725812038739	3.83196176779124	4.12516868218683	3.89862436976108	3.88407921642275	3.96292778097543	3.87750418667599	4.20426623436156	0.259883697836786	0.559132358549958	0.803636333607161
Merged-chr8-120697805-4	chr8	120697716	120697916	+	991.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29496.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	5.71751398146696	5.26501425007087	5.64864108600321	5.80762212713582	5.3366107118449	5.10861934756917	5.38492577020184	5.15320382418691	-0.663433253836377	0.0265533894651885	0.154634235929662
Merged-chr7-49633553-3	chr7	49633460	49633660	+	780.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001005232, exon 3 of 4)	exon (NM_001005232, exon 3 of 4)	3275.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	3.80890495941385	4.04137504561237	3.70512960379077	3.89936861221671	4.01430991672594	3.82228394808472	3.63653225025356	3.53128802795001	-0.288214669446954	0.547725018969834	0.796993256439558
Merged-chr2-13272548-3	chr2	13272427	13272627	+	905.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1112.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	3.18990992594911	3.13694596170376	3.61188866501626	2.93565252071878	3.11419545148978	3.36595230273422	3.35106901714226	3.36305786117218	0.242327419427163	0.677253431251192	0.867577815694437
Merged-chr17-24472608-2	chr17	24472508	24472708	+	806.599976	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001252463)	TTS (NM_001252463)	-1276.0	NM_175682	319259.0	Mm.258355	NM_175682	ENSMUSG00000045744	Bricd5	9930021D14Rik	BRICHOS domain containing 5	protein-coding	3.31854935182701	3.3276286720405	3.26416712778965	2.9705359261899	3.07619703137269	3.12828309220004	3.25132031429217	3.26237053017622	-0.148844385185238	0.792095718167894	0.919484527040164
Merged-chr1-84302992-4	chr1	84302902	84303102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18357.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	6.63867466769756	6.92683824200416	6.66951671368058	6.3769068853475	6.70626699445799	6.39373781687516	6.37701538969496	6.21093155765293	-0.311036244116366	0.201796660826784	0.504230998642117
Merged-chr13-97203817-4	chr13	97203701	97203901	+	833.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5444.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	3.68872434592953	3.80542159349925	4.01026034145726	3.91808195154432	3.66589652361588	4.08564992302734	4.32095246886395	4.18445011073185	0.583244832569395	0.207762032707083	0.511829637838142
Merged-chr2-3713398-4	chr2	3713290	3713490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025626)	promoter-TSS (NM_025626)	-68.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	7.79479509220929	7.9764701388788	7.69124972463148	7.61441311150541	7.96783953668402	8.09096557040783	7.81864740562337	7.73543980993875	0.180921911523978	0.315800553609811	0.627676968764458
Merged-chr14-21101907-1	chr14	21101807	21102007	+	756.599976	f0_balb.idr	intron (NM_134079, intron 2 of 10)	intron (NM_134079, intron 2 of 10)	25755.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	4.15790420739772	3.97283565520779	3.65984111755786	3.89505587819282	3.53739776746625	3.39207410643274	3.80022671238944	3.54212397065255	-1.08567679532496	0.0293918778340706	0.165016916891569
Merged-chr6-83020938-1	chr6	83020838	83021038	+	598.0	f1_balb.idr	intron (NM_033079, intron 7 of 9)	ORR1F|LTR|ERVL-MaLR	12533.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	2.78638502961967	2.85819359775741	2.71989763939855	2.62299220007912	2.69066153826605	2.95926177067163	2.95681731272904	2.96719714561122	0.69179914378985	0.265572488042341	0.577266946109074
Merged-chr9-114787327-4	chr9	114787179	114787379	+	819.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5286.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	3.69956342927542	3.8403309794479	3.34806646931306	3.38817307279231	3.56887036204995	3.92023836756363	3.7824279528785	3.64548564507985	0.468618690970309	0.350729745506531	0.658210096904909
Merged-chr8-35597256-4	chr8	35597184	35597384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-8264.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	5.8704486914129	5.76464592165712	6.0510694433668	6.44025005789679	6.06534322643864	5.94874410791568	6.17636277699111	5.84298347175081	-0.0992854500135406	0.719124573353001	0.887785782541509
Merged-chr6-57582577-4	chr6	57582473	57582673	+	887.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025992, intron 1 of 22)	MER57E1|LTR|ERV1	1581.0	NM_025992	67138.0	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	4.23576024512141	3.9772046359113	3.91878811406918	4.36727424506891	4.48207075363255	4.8379950397952	4.43176142938463	4.27999319380279	0.864112300108081	0.0411360304857301	0.205187211909165
Merged-chr13-91223989-4	chr13	91223886	91224086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025770)	promoter-TSS (NM_025770)	1.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	8.03217269166889	7.72053569401245	8.22097868541462	7.89381235975536	7.92072116920358	7.92654458976047	8.08908140565707	7.71048555425078	-0.0722483576107602	0.696982328611823	0.877559881683723
Merged-chr11-69045618-4	chr11	69045515	69045715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011496)	promoter-TSS (NM_011496)	-22.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	5.79810163606008	5.78269776806089	5.35387698330362	5.24433105766165	5.98783906364407	6.12676477294669	5.76948628432209	5.69745903560901	0.582796412083418	0.0443826034712843	0.214832324548286
Merged-chr18-44662156-3	chr18	44662031	44662231	+	902.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_026853, exon 1 of 5)	non-coding (NR_026853, exon 1 of 5)	135.0	NM_001085374	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	3.51014979272544	3.47078543008226	3.70690095441319	3.70350745087641	3.32175119280516	3.25657392619437	3.13658839930637	3.56057703185909	-0.960600329417761	0.0730684914400408	0.290925585069253
Merged-chr10-52376688-3	chr10	52376585	52376785	+	857.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053187, intron 1 of 7)	intron (NM_053187, intron 1 of 7)	5439.0	NM_053187	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	3.77997211367798	3.89257653786284	3.78049708604432	3.64935188896873	4.25150881207138	3.7293819248757	3.86555400358561	3.7783738787914	0.470251345229065	0.310985904502009	0.623065997594744
Merged-chr2-80168305-4	chr2	80168204	80168404	+	971.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38646.0	NM_001355140	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	4.67306225342958	4.56219466565031	5.35881872180129	5.33890383751092	5.40134633966299	5.14812780263465	5.46323539133354	5.58397252005441	0.657277025145778	0.0730560436147737	0.290914139365301
Merged-chr12-34674407-4	chr12	34674309	34674509	+	812.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	B4|SINE|B4	-145520.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	4.40541493501564	4.21581046045331	4.07812813166189	3.74311994675126	4.84716262842459	4.35799101072427	4.16230781123616	4.62980999619048	0.984792262909347	0.0248004137325573	0.147612734481722
Merged-chr18-74961333-4	chr18	74961238	74961438	+	923.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010720)	promoter-TSS (NM_010720)	-75.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	4.43068313171207	4.41435235243932	4.390246102645	4.41273878645733	4.58754203266276	4.12694457374653	4.32831242839515	4.10875639132957	-0.220869892501759	0.57751539093544	0.814166268489505
Merged-chr19-43920029-2	chr19	43919929	43920129	+	934.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 1 of 15)	RMER6B|LTR|ERVK	20169.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	3.12713425646178	3.12738408352573	3.29931947646016	3.30167011313717	2.82759876217615	3.29941412297623	3.28580688670942	3.12596486540679	-0.301055842788844	0.608153356212193	0.8303806010247
Merged-chr18-49834155-4	chr18	49834055	49834255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081371, intron 1 of 42)	intron (NM_001081371, intron 1 of 42)	1158.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	6.62432598150472	6.23656839406375	6.92622218515628	7.21126855191185	6.12603089590376	5.74085287713685	6.19690685891602	6.14095160886741	-1.09964119965138	0.000106936992906469	0.00214829344728395
Merged-chr17-63875650-3	chr17	63875557	63875757	+	695.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	MLTR31FA_MM|LTR|ERVK	-2409.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	3.94235249921105	3.33962644769445	3.67578976197691	3.53753539331825	3.30607208024065	3.38614775179736	3.38788563082235	3.76900462459374	-0.53323977915833	0.322580885314436	0.634045774326241
Merged-chr5-36484467-4	chr5	36484350	36484550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170454)	promoter-TSS (NM_001170454)	-138.0	NM_025725	66717.0	Mm.42368	NM_025725	ENSMUSG00000050677	Ccdc96	4921513E08Rik	coiled-coil domain containing 96	protein-coding	8.74649647342327	8.91100936286232	8.97879364998123	8.76510492379498	8.97285630425575	9.16050244826285	9.18991930039873	8.94795178818675	0.271690142709345	0.0720319657172312	0.288383108599292
Merged-chr9-110826050-4	chr9	110825949	110826149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199471)	promoter-TSS (NM_199471)	-641.0	NM_199471	272643.0	Mm.458525	NM_199471	ENSMUSG00000058398	Prss43	Gm661|Tessp3	protease, serine 43	protein-coding	5.82675826281204	5.61474025482297	5.46405613967815	6.11119996497152	5.78274019593366	5.5491518462769	5.82026809689653	5.26619489983051	-0.274693593271587	0.36692671286948	0.671262375227118
Merged-chr12-78206283-5	chr12	78206139	78206339	+	930.542847	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20416.0	NM_172952	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	4.89702359755939	4.64852694191636	4.89783737913687	4.90820319563735	4.83976743289545	4.92466960715854	4.87429709380261	4.70832528895014	-0.0143940612295613	0.964950746066382	0.987600044464378
Merged-chr4-63205721-4	chr4	63205607	63205807	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9705.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	5.52465649396233	5.02669761663666	5.16753303498185	5.86268226212828	5.33035954362244	5.20190972053867	5.66630419655358	5.23103764874524	-0.15058915519793	0.660967187709784	0.859227165628613
Merged-chr13-110384718-4	chr13	110384589	110384789	+	903.429199	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-10355.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	4.93370011153087	4.52336958708061	4.34593327305444	4.64010877128948	4.75413134168646	4.52528937820311	4.77912471876366	4.79903313755092	0.200291978161921	0.579524258113286	0.815384290230806
Merged-chr2-72390130-4	chr2	72390046	72390246	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178084)	TTS (NM_178084)	-86073.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	4.75886010861034	5.12773375281499	4.67692334257018	5.00409986921095	5.11915244690153	4.76779585976746	4.95584449975999	5.00980316193253	0.120146816848424	0.719586305055844	0.888022825078143
Merged-chr16-30944290-4	chr16	30944192	30944392	+	865.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137140.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	4.67949297577503	4.47327922578098	4.44307788332738	4.29433923606235	4.30716994274613	4.65882953797604	4.62158959727081	4.60298604359303	0.179836626534786	0.630522275243218	0.84289819838062
Merged-chr4-147960381-4	chr4	147960300	147960500	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19505.0	NM_029841	77034.0	Mm.183076	NM_029841	ENSMUSG00000044496	2510039O18Rik	Kiaa2013	RIKEN cDNA 2510039O18 gene	protein-coding	4.93886637918475	5.04436742543082	4.97567476208443	5.10563344876444	5.04065540414313	5.07780315573906	5.23432555836784	5.00731572676932	0.12267974058495	0.687602345592253	0.872380452246745
Merged-chr9-83574872-2	chr9	83574777	83574977	+	662.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	MTC|LTR|ERVL-MaLR	26539.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	3.50715410504968	3.61671789654735	3.85739597393642	3.77548161385979	3.67920168271907	3.5633543700475	3.60327193553564	3.25397469535469	-0.50408837507175	0.322518026508838	0.633993567259619
Merged-chr10-118041256-1	chr10	118041156	118041356	+	792.5	f0_balb.idr	Intergenic	RMER15-int|LTR|ERVL	-100531.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	3.03010013172882	2.76164300070911	2.81218993042452	3.19874448343031	2.33660424500403	2.49984220729594	2.54218133089125	2.39513237779691	-3.37725058469445	0.00020275508711092	0.00367785533778496
Merged-chr10-21670391-4	chr10	21670291	21670491	+	890.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20454.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	4.16578300288148	4.07981412397909	4.30088562329663	3.89476996287157	4.14145051941787	4.55270565562975	4.47569113840767	4.01411101710996	0.509045056228745	0.229155031611262	0.538019103264656
Merged-chr12-8659918-4	chr12	8659820	8660020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-14214.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	5.6485949058812	4.93554750195228	5.44555058004583	5.47221185563944	5.24147682962848	5.27583525401701	5.64391778936308	5.35586775365476	-0.0258616192220912	0.934631441796959	0.976356212091203
Merged-chr9-109039192-4	chr9	109039085	109039285	+	878.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025858, intron 1 of 5)	intron (NM_025858, intron 1 of 5)	618.0	NM_025858	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	4.1778423173755	4.48976478467475	3.91993788733044	3.96734784898804	4.26682190159402	4.44025868527114	4.29238296798862	4.22195440049586	0.37672290285344	0.366273072784164	0.670807951825653
Merged-chr3-89319734-4	chr3	89319655	89319855	+	757.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010108, intron 1 of 4)	CpG	3124.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	3.8114274463012	3.57518464137282	3.65100658369886	3.95679521721386	4.01929862270701	3.82493446238942	3.89219845151977	3.75840839424339	0.320206113453462	0.491158964708366	0.762813557894214
Merged-chr9-61914558-4	chr9	61914458	61914658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018853)	promoter-TSS (NM_018853)	-48.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	7.04075178208732	7.13419419974781	6.94085480886712	6.31488861535388	7.382966069556	7.09150830562083	7.05388296337879	7.15285815912768	0.414379236523574	0.0895229551776545	0.326659887557814
Merged-chr5-115158836-4	chr5	115158779	115158979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175403)	promoter-TSS (NM_175403)	-703.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	6.16853884004517	6.04282926512764	5.69773797816377	6.08804982698032	5.83049782850496	6.00323934553682	5.84542973824804	6.06788760394707	-0.130530808105689	0.603251021297363	0.828026186791373
Merged-chr1-24471421-4	chr1	24471335	24471535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 11 of 50)	intron (NM_007733, intron 11 of 50)	116002.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	7.05097845537105	7.27789760515772	7.70791305011047	6.73316210571672	7.09929637887898	7.10201633957087	6.91579085935548	6.51060164598437	-0.417455526243967	0.117666742227351	0.379406615855068
Merged-chr4-101264434-2	chr4	101264334	101264534	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 1 of 24)	intron (NM_146145, intron 1 of 24)	848.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	3.77348705898263	3.62627216032045	3.72403396910959	3.39775407494487	3.85156811594776	3.6183484665782	3.75796758686042	3.72187404650462	0.374851750214356	0.431843541105383	0.721926614973461
Merged-chr16-90385861-3	chr16	90385761	90385961	+	939.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015755)	promoter-TSS (NM_015755)	-536.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	3.78750051825793	3.88836134151294	3.5649426054937	3.87064781963237	3.38097433508401	3.90894004760344	3.66674366734931	4.14074401056451	0.0354064255270925	0.944606704921191	0.980106371692172
Merged-chr8-105566932-3	chr8	105566819	105567019	+	933.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013477)	promoter-TSS (NM_013477)	-855.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	3.1542664076595	2.88258871126141	3.21404893102589	3.26599873246156	3.32845694310804	3.20239452919908	3.20208277823974	3.42529310079446	0.558542253885389	0.322631912751498	0.634083908599246
Merged-chr12-85729575-4	chr12	85729479	85729679	+	910.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16960.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	4.50032111561424	4.63039740592681	4.18013100827125	4.33162892536085	4.68598819816513	4.631832093322	4.30857726137668	4.45695055406811	0.263921746646009	0.489090371570314	0.761571656414145
Merged-chr8-104403778-3	chr8	104403677	104403877	+	700.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7970.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	3.52540066542771	3.49381652969875	3.28441864623742	3.58556573547272	3.8729412077679	3.69620313454065	3.56552879194322	3.4089595532978	0.539265607954283	0.288599185230095	0.60062527040857
Merged-chr17-20944365-4	chr17	20944260	20944460	+	949.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-1094.0	NM_016891	51792.0	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding	4.45472049222706	4.41106725739151	4.7864505192943	4.80843844669901	4.32787796039528	4.0738277699969	4.15765166627049	4.64687858662533	-0.717532401633536	0.077471294839174	0.301066242375932
Merged-chr11-26331411-3	chr11	26331300	26331500	+	743.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55684.0	NM_025923	67030.0	Mm.18875	NM_025923	ENSMUSG00000004018	Fancl	2010322C19Rik|AW554273|B230118H11Rik|Phf9|Pog|gcd	Fanconi anemia, complementation group L	protein-coding	4.07589789414058	3.47926174277755	3.71853030660299	4.0446057030218	3.23637546762105	3.54782834108729	3.93556892857946	3.36343235518156	-0.946535682159042	0.0909244835569423	0.329476852573415
Merged-chr3-88177278-3	chr3	88177179	88177379	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045997, intron 1 of 2)	intron (NR_045997, intron 1 of 2)	506.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	5.40554163164511	5.68643588129612	5.57941587429656	5.32187965787964	5.87192927325967	5.78070879294031	5.46837566040188	5.81952387230952	0.427926726983896	0.120344083502661	0.384018645303502
Merged-chr13-51395916-4	chr13	51395833	51396033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12685.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	5.72418390141206	5.26520149656774	5.9000449189631	5.68989980098395	5.55838567621093	5.58258997152679	5.25369473300287	5.40264731965797	-0.347511741900963	0.235939346759514	0.545918160675954
Merged-chr19-3325526-4	chr19	3325424	3325624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 1 of 18)	CpG	2223.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	7.30979791764102	7.47630110748454	6.69482811065608	7.26651293381731	7.55912816657288	7.59703896458322	7.0853170017236	7.38622524076324	0.270224146704071	0.241496603685304	0.552034276752374
Merged-chr8-67950940-4	chr8	67950856	67951056	+	707.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177698, intron 3 of 14)	intron (NM_177698, intron 3 of 14)	23618.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	3.32079273543758	3.46680371016606	3.65319983737737	3.57630360718518	3.51118940672845	3.61280470321618	3.48431246791468	3.49591015519329	0.0367722865643729	0.940691529156925	0.978654793543509
Merged-chr11-86750181-4	chr11	86750034	86750234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	7433.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	4.56548123739959	4.87857431495212	4.5225403265547	4.8194416970443	4.61543776228389	4.78267206989372	4.81305022336512	4.79784342278363	0.0636376135387083	0.854315435240465	0.945139314645566
Merged-chr14-79533472-4	chr14	79533366	79533566	+	946.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	17792.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	4.66831891452804	4.62245383443986	4.28457690801488	4.54134460624728	4.8139586382344	4.60023453991046	4.53232545611941	4.37776946125385	0.137320836641787	0.710870823719286	0.884240356833917
Merged-chr2-120652151-5	chr2	120652090	120652290	+	971.3599849999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CGTG)n|Simple_repeat|Simple_repeat	42595.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	4.0124025611352	3.63314952248947	3.77049139411453	3.73439521386226	4.24201203642107	4.14525873625897	4.88385266690841	5.2880612609225	2.22294141833535	4.91287459718113e-06	0.00014576636138089
Merged-chr12-102713361-3	chr12	102713261	102713461	+	901.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8492.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	3.61219521335543	3.33299052439393	3.6127118923503	3.61820895346105	3.4616376740615	3.37751188256525	3.54663471463715	3.66031257855159	-0.121638262222418	0.807570092779414	0.925791122379966
Merged-chr16-58521416-2	chr16	58521316	58521516	+	747.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	2010.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	3.23054087010023	3.72967053386679	3.40954503553657	3.23453948229999	3.40127321528847	3.40633444155147	3.28151801309208	3.46206417080954	-0.0839409629670683	0.876019365840559	0.953384132855758
Merged-chr8-80314988-4	chr8	80314893	80315093	+	990.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179052.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	6.49407294689941	5.96657817904759	6.46490876318949	6.34552555553852	5.69206923161984	6.26802905790765	5.86078775618395	5.49383824325999	-0.744975085159187	0.00819271793453318	0.0682285562024263
Merged-chr10-121583207-4	chr10	121583109	121583309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019786, intron 2 of 20)	intron (NM_019786, intron 2 of 20)	3585.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	6.45141472213771	6.79767981135531	5.92029466743904	6.03957432441482	6.61336026384578	6.78437818397798	6.22168050207458	6.01373317020718	0.145537586605914	0.629310905381996	0.842116188261833
Merged-chr1-57862155-3	chr1	57862050	57862250	+	839.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164566, intron 2 of 11)	intron (NM_001164566, intron 2 of 11)	16579.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	3.69821570014193	3.69730186453084	3.39232355650126	3.67944549960625	3.40824569588844	3.24918064589799	3.32153136393676	3.13732468585811	-1.18077033121217	0.0289249960256844	0.163402979507105
Merged-chr7-64404152-3	chr7	64404053	64404253	+	798.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028626, intron 2 of 2)	intron (NM_028626, intron 2 of 2)	11531.0	NM_001355124	73724.0	Mm.10093	NM_028626	ENSMUSG00000033429	Mcee	1110007A04Rik	methylmalonyl CoA epimerase	protein-coding	3.83061110686532	3.77153822394686	4.02131374717385	4.24415635561446	3.38076811401077	3.72729045877574	3.59523558314861	4.14444389851522	-0.713286106991426	0.169002744644521	0.461552636344716
Merged-chr7-5062812-1	chr7	5062712	5062912	+	1000.0	f0_c57.idr	intron (NM_001205231, intron 1 of 11)	intron (NM_001205231, intron 1 of 11)	669.0	NM_001205231	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	4.26860844536288	4.32615927517942	4.22168220485216	4.10552825938848	4.41157565865998	4.48856134298599	4.53878676967789	4.594051229829	0.670764287975256	0.0705521379073181	0.28469911249716
Merged-chr11-59248291-3	chr11	59248187	59248387	+	682.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009522, exon 4 of 4)	3' UTR (NM_009522, exon 4 of 4)	-20020.0	NM_007476	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	3.63579284400368	3.70462922058163	3.68686872297901	3.89436504908946	2.98920866072308	3.25523796092563	3.67098010638098	3.63418774583845	-1.06412327471528	0.0665426144435225	0.274926674801224
Merged-chr7-99043540-4	chr7	99043442	99043642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	intron (NM_178635, intron 6 of 14)	97602.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	6.97167977907075	7.0493329908253	6.56664396495696	7.0688755762599	6.82907397573184	6.72738576133003	6.94992665588335	6.73740433286477	-0.174329129136266	0.412187873786638	0.707394257928814
Merged-chr12-16828699-4	chr12	16828598	16828798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17733.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	5.42490903081389	5.60965807091987	5.36558103486703	5.6238117304915	5.44471194405846	5.51068098558906	5.75296086111907	5.45113841563188	0.0339142497009514	0.902233918413083	0.963727511420608
Merged-chr6-115838491-4	chr6	115838390	115838590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110506)	promoter-TSS (NM_001110506)	-78.0	NM_001110506	212516.0	Mm.333333	NM_198603	ENSMUSG00000030321	Efcab12	BB124106	EF-hand calcium binding domain 12	protein-coding	5.39711723883232	5.6505571431863	5.36739914556659	5.12877959547488	5.75741288318844	5.93614384885989	5.42988204620355	5.56399035860785	0.514283317535281	0.0806996957176681	0.3081446082017
Merged-chr7-19956662-4	chr7	19956550	19956750	+	936.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5907.0	NM_027308	70080.0	Mm.98583	NM_027308	ENSMUSG00000040498	Igsf23	2210010C17Rik	immunoglobulin superfamily, member 23	protein-coding	4.29209267946922	4.14692485140662	3.86080878737341	4.06355324376542	4.31438399517643	4.09284798777952	3.95394293769611	4.2900102668551	0.203259668897206	0.628590402332604	0.841592736581755
Merged-chr13-23562033-2	chr13	23561933	23562133	+	741.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178205, exon 1 of 1)	exon (NM_178205, exon 1 of 1)	332.0	NM_178205	319151.0	Mm.261658	NM_178205	ENSMUSG00000069273	Hist1h3e	H3-f|H3.1	histone cluster 1, H3e	protein-coding	4.37002688804437	4.92962729109504	4.6545879349491	3.89309417994116	5.2856102769651	5.2283073913748	5.14813322635894	5.02012509754515	1.35373705885579	0.000766448370209597	0.0108740339930534
Merged-chr6-127142664-4	chr6	127142590	127142790	+	766.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009829, intron 3 of 4)	intron (NM_009829, intron 3 of 4)	-6699.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	4.07878158286441	3.69655205792207	3.57316575486893	3.46712582437074	3.59440845658598	4.11809190248537	3.61945176853953	4.1961433304734	0.541403473080156	0.293764871193988	0.606189185560296
Merged-chr11-54439541-3	chr11	54439492	54439692	+	889.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 1 of 17)	intron (NM_173753, intron 1 of 17)	1413.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	3.15789884568298	3.16754519204415	3.64017816096234	3.03657383196848	3.24448796792296	3.27119668695343	3.43331114324529	3.44591419336796	0.316671346953368	0.574113642482479	0.812108092694771
Merged-chr14-50898186-4	chr14	50898088	50898288	+	960.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4933.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	5.28698062075893	4.76999535719279	4.77997865978298	4.74588927913899	4.98296376719071	4.79208584351595	4.75756804022164	5.02431361109575	-0.011550574487816	0.973385835218257	0.990485651958264
Merged-chr14-19768870-4	chr14	19768775	19768975	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008695, exon 4 of 21)	exon (NM_008695, exon 4 of 21)	17618.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	5.58604746913871	5.34830847337984	5.21297714274069	5.54236321896308	5.48754599364928	5.35625188095201	5.67651781920701	4.99175806747806	-0.0547196191322044	0.858913121981077	0.946576014812915
Merged-chr3-103967993-4	chr3	103967885	103968085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163467)	promoter-TSS (NM_001163467)	-125.0	NM_001163467	18685.0	Mm.385178	NM_013629	ENSMUSG00000058388	Phtf1	AU041898|AW049785|Phft|Phtf	putative homeodomain transcription factor 1	protein-coding	5.3409954991089	5.86249387787509	5.59430515310957	5.45681191709549	5.6697614824033	5.00042717494456	5.63946198810561	5.20789543061325	-0.266815680501914	0.406100485539682	0.702655123249283
Merged-chr2-150311424-4	chr2	150311309	150311509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027017, intron 3 of 3)	intron (NM_027017, intron 3 of 3)	51356.0	NM_027017	69277.0	Mm.272470	NM_027017	ENSMUSG00000063364	3300002I08Rik	2900016H11Rik	RIKEN cDNA 3300002I08 gene	protein-coding	7.82074385328061	7.56352581176978	7.66742339597096	7.85825406322246	7.81729040605704	8.00721956555377	8.24479580823171	8.06567989577782	0.390515382919696	0.0304542214494393	0.168916155891034
Merged-chr13-67871054-1	chr13	67870954	67871154	+	577.0	f0_c57.idr	Intergenic	Intergenic	7728.0	NM_001001185	408058.0	Mm.177840	NM_001001185	ENSMUSG00000064063	BC048507	-	cDNA sequence BC048507	protein-coding	2.11691924454646	2.07592825402026	2.1170712386788	1.86938559229527	2.98537286982737	2.5406562762103	2.72741207889522	2.62319667699612	6.68139390712749	3.37389358465028e-10	2.38008296790706e-08
Merged-chr7-45830860-4	chr7	45830763	45830963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153419)	promoter-TSS (NM_153419)	-74.0	NM_153419	101612.0	Mm.274847	NM_153419	ENSMUSG00000053801	Grwd1	A301|AI504353|Grwd|Wdr28	glutamate-rich WD repeat containing 1	protein-coding	5.87746262205411	6.04918748713224	5.73800477482034	5.52593108266773	5.6459028304856	5.96094946224704	5.60642617096897	5.57601110016766	-0.161608090397701	0.562403314321595	0.805653387338931
Merged-chr3-152406169-4	chr3	152406070	152406270	+	934.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287139, intron 1 of 13)	intron (NM_001287139, intron 1 of 13)	9486.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	4.55118079966808	4.43759476621456	4.5080213482956	5.01262174076098	4.56142268515113	4.88618123938994	4.93097050913302	4.71075061902795	0.21393562038526	0.575777336373793	0.813185666420437
Merged-chr5-115158350-4	chr5	115158290	115158490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175403)	promoter-TSS (NM_175403)	-214.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	8.4618265911804	8.7680513309985	8.85869627641884	8.27246373075309	8.71571096479196	8.84581226426899	8.77674216891878	8.52317754799913	0.143030010355301	0.441463871644155	0.72851318019698
Merged-chr19-29521204-4	chr19	29521097	29521297	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015567, intron 1 of 3)	intron (NR_015567, intron 1 of 3)	790.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	5.25850124050073	5.54187889997784	5.2593898803472	5.87883731080129	5.64784772418399	5.72931308054234	5.20017784501373	5.49790621035844	0.00266982706373708	0.993306156959362	0.997665221908484
Merged-chr1-182375351-3	chr1	182375259	182375459	+	853.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33753.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	3.53035382962898	3.06003625823244	3.33386264570153	3.27349696408338	3.19024150886144	3.07494631757269	3.26653316743257	3.03371481798676	-0.606379942967911	0.287922158618232	0.599889100145981
Merged-chr9-116166422-4	chr9	116166308	116166508	+	967.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	8955.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.25365440788173	5.84083863760076	5.53372867106853	5.37375969571386	5.10573184241432	4.95149747384221	4.95304492208967	5.25091362096501	-0.809209002269943	0.0104260138981376	0.0813918972420906
Merged-chr4-141724867-4	chr4	141724758	141724958	+	889.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1439.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	4.22405236103546	3.92297035463099	4.17713481494665	4.28659947320978	4.64208171962144	4.30349074387806	4.33780530034694	4.47504254028681	0.683540641626751	0.085689261619533	0.318811199534728
Merged-chr6-29526139-4	chr6	29526033	29526233	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012057)	promoter-TSS (NM_012057)	-492.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	4.72067090598112	4.80876195526166	5.78032694581072	5.40655156327885	4.76555794466835	5.02814390113931	5.23381843829948	5.10088183004262	-0.40350708158167	0.299666841547629	0.611914155398268
Merged-chr4-70398294-4	chr4	70398196	70398396	+	792.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145990, intron 3 of 36)	RLTR16B_MM|LTR|ERVK	12139.0	NM_001313762	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	4.00849295107459	3.51688709095346	3.75658633864795	3.60277900470975	4.04940205125371	3.87779847417525	4.23728983693539	4.05159507966473	0.948414679107339	0.0364460963125895	0.189884108434622
Merged-chr14-31172947-4	chr14	31172836	31173036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022656, intron 19 of 20)	intron (NM_022656, intron 19 of 20)	-4295.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	6.88110502064356	6.91249356207931	7.24917828422515	6.98197173159685	6.73813428727838	6.82610566274713	6.8205651187695	6.47240853975435	-0.406814300447869	0.0519879878598554	0.23737380114822
Merged-chr11-107012390-4	chr11	107012283	107012483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12858.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	6.3528451501244	6.62575343469313	5.79330563513519	6.02104646172162	6.09465364245425	5.9973138072261	5.93367711431352	5.81502277337029	-0.41272239435919	0.139292502483099	0.414979952881487
Merged-chr10-92861775-1	chr10	92861675	92861875	+	1000.0	f0_balb.idr	intron (NM_001347060, intron 61 of 67)	intron (NM_001347060, intron 61 of 67)	-139357.0	NM_008682	17997.0	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding	2.95354568540747	2.90739203208395	3.59081370017144	3.42026428803522	2.56188073166123	2.61710040140785	2.66633874522662	2.88752938138831	-2.80707429082873	0.000363486129295605	0.00593477645047761
Merged-chr14-21814044-4	chr14	21813952	21814152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-17509.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	5.73816417174053	5.7928641740262	5.71262535357543	5.60037210656451	6.35291629468531	5.80874469147702	6.05120625862521	6.46992393749448	0.788021068446567	0.00263604031901765	0.0288840384648026
Merged-chr19-34747013-4	chr19	34746919	34747119	+	862.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172838)	promoter-TSS (NM_172838)	92.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	4.41186490230265	3.89760225287245	4.52408288974525	4.70449483138609	3.61196158042235	4.01776837704151	4.31209641677754	4.00174254353635	-1.05618342003711	0.0288346657545371	0.163136688160098
Merged-chr18-82906380-4	chr18	82906348	82906548	+	733.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4431.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	3.07683655375328	2.97605544575137	3.35330588097956	2.90393015338032	3.1724512814262	3.24930446671863	3.00407639886838	3.13572916579394	0.256460792785387	0.658387133097423	0.857847255976523
Merged-chr11-22370615-1	chr11	22370515	22370715	+	783.666687	f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-83820.0	NM_001252515	216565.0	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	2.41396716217289	2.50479157098431	2.4141548868178	2.20233932057086	2.94751087762935	3.20794715433752	3.0743640203567	3.18911771937692	4.27761663394267	4.34827441917335e-08	2.02291388811987e-06
Merged-chr16-37575528-2	chr16	37575428	37575628	+	860.0833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4625.0	NR_027778	15233.0	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding	3.24123214636391	3.02459635659592	3.05443837551411	3.197913181158	3.53033586870861	3.29356334386498	3.17091251747785	3.4532509678749	0.870201304455174	0.112205303068667	0.37021560594839
Merged-chr5-140206043-4	chr5	140205948	140206148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152617, intron 10 of 16)	intron (NR_152617, intron 10 of 16)	-31130.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	5.50044458423227	5.43195027575417	5.93264559061114	5.58419287403358	5.04430298479063	5.44060013745472	5.39020582708946	5.19297810365883	-0.628327800117654	0.0358805903038441	0.188135877512878
Merged-chr9-89198910-1	chr9	89198810	89199010	+	1000.0	f0_balb.idr	promoter-TSS (NM_007534)	promoter-TSS (NM_007534)	-363.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	4.61558760127526	5.02052760761222	4.86738778391654	3.24261975064073	4.53370577757793	4.79297060782456	4.70642451457443	4.39890397149578	-0.0300982344735985	0.969802155888127	0.989095984799937
Merged-chr15-86214400-4	chr15	86214310	86214510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145476)	promoter-TSS (NM_145476)	-49.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	6.94852547596683	7.12811459965048	7.07716896773406	7.13914636945232	7.24581952051702	7.44446033946489	7.13506029720557	7.3248456665191	0.283964337129397	0.126505291496894	0.3953901463853
Merged-chr9-89973896-3	chr9	89973795	89973995	+	704.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357743, intron 8 of 26)	intron (NM_001357743, intron 8 of 26)	64120.0	NM_001357743	19417.0	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	3.1452981650559	3.03683378759861	2.73739523125685	3.1088520080435	3.11882135420121	3.37131082532535	3.29642423488481	3.14405091335089	0.821688010103784	0.16699106768704	0.45848209395888
Merged-chr8-26696889-3	chr8	26696753	26696953	+	899.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	127570.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	3.5542970052478	4.13831091154154	3.9653040627231	3.80076451414451	3.63948913386448	3.60942247957454	3.54197611260408	3.82399341258111	-0.669877513600125	0.170560644178368	0.463747304290085
Merged-chr4-44182592-4	chr4	44182482	44182682	+	879.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14299.0	NM_001038993	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	4.03155817056796	3.82946001620396	3.93500618274272	4.32318800127533	3.99676039768843	3.5707621840222	4.14628765854068	4.11984319735507	-0.204160089179674	0.667310425748421	0.862338897157766
Merged-chr1-87112043-4	chr1	87111926	87112126	+	957.710693	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10420.0	NM_001081082	76768.0	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	4.508443758009	4.05414364125044	4.27107143806784	4.57025481679174	3.85190517312879	4.20853484361997	4.20790955580997	4.13037978982751	-0.693628774481519	0.104031468755526	0.354502868371773
Merged-chr6-114404346-4	chr6	114404222	114404422	+	893.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252642, intron 1 of 1)	intron (NM_001252642, intron 1 of 1)	656.0	NM_001252643	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	4.23745202702003	4.47194927062326	4.61137360758626	4.7445297498031	4.2717416841725	4.0966508717268	4.31186517880151	4.41481544759376	-0.619658907751731	0.117550362538097	0.37922032519485
Merged-chr4-124847792-4	chr4	124847714	124847914	+	880.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008636, exon 11 of 11)	3' UTR (NM_008636, exon 11 of 11)	2750.0	NM_001347196	68920.0	Mm.272397	NM_001142727	ENSMUSG00000078570	1110065P20Rik	C530005M16Rik	RIKEN cDNA 1110065P20 gene	protein-coding	4.4938553214885	4.36235449629161	3.94246973991478	3.98412373722305	4.12338679606239	4.2803971443994	4.39681069793782	4.4915892828768	0.288825790794204	0.49373955857907	0.764438087754564
Merged-chr12-32292578-3	chr12	32292481	32292681	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-83932.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	4.50063210845104	4.38955435189699	4.62507928785722	4.37942717720676	4.77930027044985	4.83541762133657	4.64181547162412	4.73470104644188	0.619407291994646	0.0726769143366698	0.290019066298695
Merged-chr12-54986377-4	chr12	54986279	54986479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013815)	promoter-TSS (NM_013815)	-43.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	7.30623410208682	7.62114736444539	7.11618283028072	7.20636904009918	7.51954391308083	7.42037231452802	7.15107640612107	7.23818813636193	0.0259095030391804	0.89935051377712	0.962548928270847
Merged-chr2-147013880-3	chr2	147013761	147013961	+	998.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356402, intron 1 of 28)	intron (NM_001356402, intron 1 of 28)	862.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	4.20744502473422	4.26049004636397	4.68403973849605	4.45541424316329	4.56924663125646	4.92315296107808	4.38225555544367	4.64426581725504	0.497131651513808	0.196225132992078	0.497236651745317
Merged-chr11-99164648-4	chr11	99164555	99164755	+	848.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9578.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	4.6723355833727	5.0051621063671	4.54416054850809	4.14872353106614	5.39320495462744	4.7672154429171	5.00321124137294	4.62849537545801	0.75256231853746	0.0663722779026308	0.274621424683564
Merged-chr3-122372871-3	chr3	122372774	122372974	+	977.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46883.0	NM_013867	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	4.30537873835808	4.39808043656734	4.61036364581183	4.95167523674365	3.76815457532206	3.62985602040676	4.05374340590193	3.96177178979462	-1.92948067443265	3.40280574995184e-05	0.000807361034919407
Merged-chr18-38978052-3	chr18	38977946	38978146	+	831.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15099.0	NM_001361073	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	3.5493051733674	3.7573879536762	3.45096378044817	2.84849650006716	2.79582210987503	2.9160440038337	3.15301181096822	3.34183731288355	-1.41012996213903	0.0384040830184527	0.196574444496652
Merged-chr11-65806590-4	chr11	65806484	65806684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026107)	promoter-TSS (NM_026107)	-591.0	NM_001302374	52712.0	Mm.340052	NM_026107	ENSMUSG00000018347	Zkscan6	1700128E15Rik|D11Ertd714e|KOX11|Zfp535|Znf18	zinc finger with KRAB and SCAN domains 6	protein-coding	7.35193098336819	7.17723344864282	6.82771931144293	7.41319751171836	6.99153228537907	7.1420699715642	6.87683936915833	6.63577407546848	-0.406621886246305	0.0683542673050753	0.279190209797519
Merged-chr1-134791213-4	chr1	134791104	134791304	+	989.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081307, intron 18 of 23)	intron (NM_001081307, intron 18 of 23)	12517.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	5.28294302644043	5.24344775084327	5.37008859881679	5.17017638895941	4.91657642610047	5.59579403051714	5.10061556989475	5.05299526709068	-0.149954693460609	0.639060699149977	0.847417964618581
Merged-chr12-108170664-4	chr12	108170569	108170769	+	852.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028262, intron 1 of 12)	intron (NM_028262, intron 1 of 12)	8615.0	NM_028262	52690.0	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	4.25274890499393	3.78394417334408	3.98158491839914	4.25587381563807	4.01430807937999	3.88269942627343	4.06114130674163	4.29073132813873	-0.0565313733621547	0.898270418690623	0.962095642776229
Merged-chr19-55556422-4	chr19	55556345	55556545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	145759.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	5.99791084349127	6.20532407313137	6.20153398650249	6.1554818830519	6.09482910078565	5.98696412108015	5.96839645162732	5.80563028067813	-0.26548054264406	0.262284298674798	0.574184293693129
Merged-chr7-55961676-4	chr7	55961569	55961769	+	946.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015495)	promoter-TSS (NR_015495)	824.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	4.45346916952419	4.30498045912789	3.98477402670763	4.29955461831473	4.65321384598214	4.63056045470036	4.77562811773431	5.14459745911141	1.18864072286431	0.00201428781596661	0.0235090024962276
Merged-chr18-38419703-2	chr18	38419611	38419811	+	787.0	f0_balb.idr|f0_c57.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	804.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	4.2160139625435	4.04018760860706	3.82555298339014	4.25984896884927	3.88648653579164	4.254232181958	4.06587212800403	4.03347924850792	-0.124631040190573	0.773512566982629	0.91146328188022
Merged-chr7-127876201-4	chr7	127876092	127876292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362191)	promoter-TSS (NM_001362191)	-550.0	NM_001362191	244219.0	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	6.09960320088783	6.38355827886293	6.00707024703939	6.43132025945843	6.60386382981908	6.72760644963769	6.57984824374367	6.82895635014312	0.62061680759384	0.00698983368912853	0.0608152270087372
Merged-chr18-62044329-4	chr18	62044260	62044460	+	921.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	91285.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	3.93462437040471	3.7393467560431	3.93518740901375	4.14630041302879	4.02110824518795	3.70860244091712	4.18807265857642	4.28375464109764	0.293587821931805	0.520283455156342	0.780730751415725
Merged-chr2-174328621-2	chr2	174328521	174328721	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310083, exon 2 of 13)	5' UTR (NM_001310083, exon 2 of 13)	707.0	NR_003258	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	3.7697968806796	3.34990247528972	4.06651053018776	3.414170856053	3.61113025146542	3.89549207948076	3.90899695816872	4.62350822346855	1.06079945081616	0.0552207511539326	0.245705935261972
Merged-chr9-47581697-3	chr9	47581594	47581794	+	840.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	51342.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	4.17424058980719	3.95969812925817	3.74045509711288	4.06743762033938	3.72321563116385	4.0238548388005	3.78175248962974	4.08779061729655	-0.254903741533865	0.572109835483287	0.811118533609499
Merged-chr18-8677672-4	chr18	8677580	8677780	+	968.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-535176.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	4.48908647224587	4.78900985151749	4.48976867116183	4.56214728095773	5.3137924397344	5.31840464140629	5.50397375789888	5.01530127578432	1.38798087830231	2.39934533322711e-05	0.000597770393677887
Merged-chr16-38458923-4	chr16	38458808	38459008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009855)	promoter-TSS (NM_009855)	-25.0	NM_001359898	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	7.09271259781399	7.36811864143952	7.03460131683498	6.58637361649236	7.24332417083978	7.28204241921178	6.84458717902559	6.45476046931151	-0.0581835515590259	0.828465647215812	0.934169961374777
Merged-chr1-172525325-4	chr1	172525227	172525427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027972, intron 1 of 11)	intron (NM_027972, intron 1 of 11)	4197.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	5.94051970591971	5.21632403630043	6.02187221995736	5.7987801093978	5.62540355144887	5.42019755898032	5.93150941543524	5.58013788997307	-0.20220894955984	0.509745094378039	0.774189093857689
Merged-chr13-112466785-4	chr13	112466688	112466888	+	933.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010560, intron 1 of 16)	intron (NM_010560, intron 1 of 16)	2718.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	4.91267616876038	4.9131693374603	4.65753418912793	4.59019812296892	5.21287212513383	4.30351101310237	4.67540649088328	4.65451459051827	0.00251771914946904	0.994942600509705	0.998190746524986
Merged-chr5-140642261-4	chr5	140642146	140642346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	6785.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	7.24593339891673	6.95155719002147	7.10062795620627	7.23678928462696	7.22632322932661	7.26555259002005	7.1787457435688	7.2206740315107	0.107596965695949	0.561004207962263	0.804831573486766
Merged-chr1-152922084-3	chr1	152922000	152922200	+	733.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19454.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	3.29373450631291	3.07600537245985	3.11653921664749	3.20679179356845	3.37682548633369	3.22637756960547	3.33480016999899	3.29238772737304	0.499200057593513	0.347664720218542	0.655546119710951
Merged-chr13-36700067-4	chr13	36699951	36700151	+	962.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	34426.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	4.49105305477754	4.47892662226839	4.21122545753059	4.34728177872863	4.68165058197876	4.39125400870455	4.59033961683811	4.97139277096464	0.650616409118387	0.0813223906343801	0.309417833291006
Merged-chr1-177489997-4	chr1	177489926	177490126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44205.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	6.70014026896048	6.67962424882601	7.03180464022278	7.11451115094551	6.72257194013625	6.36654103336366	6.54052167496345	7.07242881341305	-0.280328151088436	0.249073304012808	0.560244116255019
Merged-chr1-135753111-4	chr1	135753017	135753217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_153810)	TTS (NR_153810)	-12968.0	NM_013750	27280.0	Mm.34346	NM_013750	ENSMUSG00000041801	Phlda3	Tih1	pleckstrin homology like domain, family A, member 3	protein-coding	6.29844703619879	6.57470474138193	6.31911115509848	6.41004465836116	6.62976064408961	6.69254882749139	6.94667882475357	6.4949734148075	0.422467793645879	0.0553318730786615	0.245969734815516
Merged-chr2-78046201-3	chr2	78046103	78046303	+	879.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A_|LTR|ERVL	-4974.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	3.12472463997966	3.44434946721921	3.12508038033208	3.4978983718531	3.04371911582695	3.35788740113923	3.17585463648609	3.24451340438631	-0.429763562279323	0.451125827819116	0.735774833837515
Merged-chr15-79038053-4	chr15	79037945	79038145	+	940.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013847, exon 9 of 9)	3' UTR (NM_013847, exon 9 of 9)	-3840.0	NM_015738	14429.0	Mm.390805	NM_015738	ENSMUSG00000114755	Galr3	Galnr3	galanin receptor 3	protein-coding	4.90942522259565	5.09628840500957	4.3356512954729	4.75589197767857	4.5991919788325	4.7041890710997	4.78390299658143	4.69136176960135	-0.2341559673597	0.52464860308472	0.783071329178099
Merged-chr2-118905595-4	chr2	118905512	118905712	+	915.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045523, intron 1 of 6)	intron (NM_001045523, intron 1 of 6)	3997.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	4.65879412607721	4.86051311766336	4.57050209164891	4.79606828464419	5.12115927953883	5.38025062773855	4.87162125678449	4.92723919140531	0.701563909435008	0.0368690366229744	0.191247715915077
Merged-chr14-51941393-4	chr14	51941274	51941474	+	997.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18601.0	NM_001011687	497071.0	Mm.378602	NM_001011687	ENSMUSG00000068392	Rnase13	-	ribonuclease, RNase A family, 13 (non-active)	protein-coding	6.29104446135915	6.35798229887236	6.27481001202187	5.97610724805445	5.74718787916795	5.91626918405394	5.97180803084817	5.50050814543957	-0.676548952846595	0.00949794682830334	0.0760466093691567
Merged-chr1-139003737-4	chr1	139003641	139003841	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	26084.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	5.11352259527036	5.18602665146097	5.17544087847433	5.10982238841628	4.76351715854417	5.12147101668808	4.85094948150349	4.66696538875693	-0.571551878849683	0.0743588701472683	0.293902345659128
Merged-chr3-108886277-4	chr3	108886152	108886352	+	717.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165965, intron 2 of 11)	intron (NM_001165965, intron 2 of 11)	3756.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	3.60857601412792	3.55804658238537	3.32434613198115	3.26336361150658	3.72177878130887	3.50094055379705	3.64355130076356	3.55491515473146	0.578336691103138	0.246909757675604	0.558168726560377
Merged-chr4-32170954-3	chr4	32170827	32171027	+	799.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	206820.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	3.68527001969685	3.40107571246609	3.52823173189265	3.31664282473169	3.48028954828802	3.70074801185259	3.71785560870203	3.63327919130239	0.500578000646515	0.309806451494317	0.621980972835618
Merged-chr6-39592651-4	chr6	39592548	39592748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358797)	promoter-TSS (NM_001358797)	83.0	NR_152450	68198.0	Mm.29415	NM_026612	ENSMUSG00000002416	Ndufb2	1810011O01Rik|8kDa|AGGG|AI325567|CI-AGGG	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2	protein-coding	7.20352686309206	7.37063837678787	7.5985541640636	7.1263259636462	6.8801512608258	7.09929087601476	7.11249378514253	7.05998875582039	-0.400231241235627	0.0478525367817362	0.225643505041096
Merged-chr1-155050354-4	chr1	155050258	155050458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32906.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	8.41416971791069	8.51463201677114	8.26330871749714	8.23630439190015	8.26086888304458	8.3385881962438	8.3027465617276	8.33084943353296	-0.065669296238445	0.673364707868996	0.865717176504662
Merged-chr14-31462431-4	chr14	31462354	31462554	+	730.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-26354.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	3.74161643560055	4.11705377891323	3.93704149908357	3.03718526870973	3.91987003752835	3.63369208089663	3.30228684777098	3.97883339648379	-0.122263339516323	0.841171230688973	0.939534687482706
Merged-chr15-64085979-4	chr15	64085881	64086081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001276462)	TTS (NM_001276462)	-25533.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	5.94003228970268	5.79828752328096	5.72519733852455	6.07176603410795	5.78522624014869	5.87558577301678	6.11271919999159	5.91461951496986	0.0285219736580555	0.910805491967537	0.966850463256786
Merged-chr15-58754785-3	chr15	58754679	58754879	+	868.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68648.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	3.69744764239516	3.26917616979945	3.9090411620751	3.68010454867319	3.49039476886913	3.24132626377444	3.04787781238476	3.19657698516268	-1.36774490269542	0.0215044283787846	0.134323494213971
Merged-chr5-90603547-4	chr5	90603442	90603642	+	926.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028478, exon 11 of 11)	3' UTR (NM_028478, exon 11 of 11)	36985.0	NM_028478	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	3.99197616886003	4.52667555657132	4.20128403688804	4.75568615114342	4.26239180974818	4.42203456854051	4.18339325605276	4.33583955774375	-0.286574926774253	0.505991310959785	0.771798039704415
Merged-chr9-79793519-4	chr9	79793423	79793623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133718)	promoter-TSS (NM_133718)	-93.0	NM_133718	69981.0	Mm.486324	NM_133718	ENSMUSG00000032328	Tmem30a	2010200I23Rik|AW540225|Cdc50a|D9Wsu20e	transmembrane protein 30A	protein-coding	8.67013042131081	8.78010095665575	8.85580219982415	8.61914332206327	8.63457852326357	8.86261114285337	8.8716736973745	8.41242121445764	-0.0307268356556745	0.855372180876996	0.945617625922462
Merged-chr18-11687023-3	chr18	11686924	11687124	+	900.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 4 of 18)	intron (NM_001081223, intron 4 of 18)	29675.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	3.16914165955363	3.21087806667452	3.24515064755639	3.08500179883432	4.21293515369375	3.91529226499491	3.95542481304572	4.20730393854375	2.92823717664122	7.34993969849183e-09	4.00683905630913e-07
Merged-chr10-86021851-4	chr10	86021751	86021951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153195)	promoter-TSS (NM_153195)	-78.0	NM_153195	69754.0	Mm.44236	NM_153195	ENSMUSG00000001786	Fbxo7	2410015K21Rik|A230052G17Rik|AI117679|AW260462|C85118	F-box protein 7	protein-coding	8.09751037238509	8.01362902538142	8.11151547040868	8.13521487369292	8.02729012558678	8.22440466528235	8.33315999843283	7.95202520945938	0.0626081478681048	0.706741707034332	0.882215762445699
Merged-chr7-65693470-4	chr7	65693309	65693509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026795)	promoter-TSS (NM_026795)	-8.0	NM_178056	68634.0	Mm.476828	NM_026795	ENSMUSG00000078681	Tm2d3	1110025I09Rik|5930422O05Rik|Blp2	TM2 domain containing 3	protein-coding	6.8755903704758	6.77350585589917	6.58061608259202	6.76194259645014	6.64547708288917	6.89915450706374	6.97866096151964	6.87192180690946	0.13247971462122	0.517459181377925	0.778892868568594
Merged-chr4-140989629-3	chr4	140989492	140989692	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164366, intron 1 of 28)	intron (NM_001164366, intron 1 of 28)	2719.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	3.57392730295141	3.81726022610348	3.68883306652563	4.00848185527712	3.81901879476081	3.69078388466948	3.61933630680742	4.06302075232849	0.038579385368894	0.936450791695142	0.976982835019912
Merged-chr19-18615995-3	chr19	18615895	18616095	+	709.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	B3A|SINE|B2	15818.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	3.24112993421736	3.24792591970472	3.66971443712149	3.40527724045495	3.46659098552709	3.35345963197998	3.4060086737407	3.47152713477868	0.0892110307275478	0.864105173387613	0.948954560889149
Merged-chr2-168956056-3	chr2	168955938	168956138	+	973.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009564)	promoter-TSS (NM_009564)	-451.0	NM_009564	22722.0	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	4.78222030984526	4.24040495416293	4.16737563975032	4.48453482922192	3.93830601557534	3.82527511995135	3.99405671584188	4.8389185997688	-0.521497011566992	0.296952206025169	0.609005706994714
Merged-chr5-135573171-4	chr5	135573064	135573264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019577)	promoter-TSS (NM_019577)	-115.0	NM_001356630	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	7.63203762953445	7.44589172354044	7.97539670124642	7.57920994279154	7.3313370962294	7.46604696476245	7.55342649534381	7.29422697816473	-0.337996561703489	0.0822379117816785	0.311342069813824
Merged-chr16-25052573-3	chr16	25052459	25052659	+	947.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7080.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	3.71625503706094	3.38907255706946	3.76160446291483	3.58336236745245	3.39261965937217	3.19200116332891	3.21147997713933	3.51773654796518	-0.954838089802398	0.0755604115674996	0.29691479159562
Merged-chr1-131827932-4	chr1	131827847	131828047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173865)	promoter-TSS (NM_173865)	-65.0	NM_173865	98396.0	Mm.389181	NM_173865	ENSMUSG00000013275	Slc41a1	AI573938|B230315F01Rik	solute carrier family 41, member 1	protein-coding	7.98356755670242	7.85362585444367	7.73579087268822	7.771044786226	7.71970175777199	8.02180290609031	7.70620681948103	7.73860972415854	-0.0483911691922528	0.779728074068184	0.914126306685432
Merged-chr8-3631107-4	chr8	3631014	3631214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011503)	promoter-TSS (NM_011503)	5.0	NM_011503	20911.0	Mm.7247	NM_011503	ENSMUSG00000004626	Stxbp2	C79054|Munc-18-2|Munc-18b|Munc18b|Sxtbp2|Sxtp2|Unc18-2|Unc18b|muSec1	syntaxin binding protein 2	protein-coding	6.49997692968744	6.02932802867529	6.15260640067745	6.20036034476757	6.51679400995339	6.5592379857036	6.57470582971041	6.30672420200775	0.39824812521798	0.0822012944097737	0.31128485660563
Merged-chr10-77972352-3	chr10	77972243	77972443	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2471.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	4.54970078028704	5.04401538935522	4.45175085841244	5.05730596715146	4.96012721045187	5.1639428801355	5.1244949605765	5.23312338233767	0.571540025545045	0.112199789085488	0.370214573860373
Merged-chr1-191092510-7	chr1	191092406	191092606	+	981.095215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5908.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	4.39656849780302	4.29460304815463	4.99763821350733	4.44785686142069	4.25515958815954	4.52798678280787	4.50505462400229	4.64001338340134	-0.16422029200261	0.682868858528331	0.870075943025707
Merged-chr7-47023730-4	chr7	47023612	47023812	+	941.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15298.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	4.17543895653215	4.57918817326261	3.89808146321657	4.45119857150622	4.51300297360748	4.40085028763532	4.71346565282133	4.27026362966007	0.398186796955779	0.345464449440461	0.653741001933391
Merged-chr2-181161644-4	chr2	181161540	181161740	+	857.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4625.0	NM_007906	13628.0	Mm.2645	NM_007906	ENSMUSG00000016349	Eef1a2	EEF1AL|EF-1-alpha-2|Eef1a|S1|STN|wasted|wst	eukaryotic translation elongation factor 1 alpha 2	protein-coding	3.47048783619205	3.86990227790776	3.78335305035237	3.86133077162117	3.95778314410674	3.72471569482106	4.4391913876883	4.32049565741061	1.01451683132565	0.0377954180335799	0.194381507240765
Merged-chr1-133613844-4	chr1	133613753	133613953	+	773.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER96|DNA|hAT-Tip100	-3573.0	NM_009227	20643.0	Mm.249110	NM_009227	ENSMUSG00000090553	Snrpe	AL022645|C76690|SME	small nuclear ribonucleoprotein E	protein-coding	3.85793221940458	3.66464621015877	3.85848670627482	3.83562856733982	3.74242930563268	3.75573215901334	4.15333747311026	4.17029010623764	0.450437596698215	0.322450646861626	0.633955214699031
Merged-chr12-3780492-4	chr12	3780394	3780594	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007886, intron 18 of 18)	intron (NM_007886, intron 18 of 18)	-26486.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	5.40146415069254	5.39593709826674	5.0352737444984	5.19574951694348	5.0767175965437	4.94059921252831	5.04576501767422	5.28782368296309	-0.315092238717046	0.305867325112155	0.618345602946919
Merged-chr5-120502210-4	chr5	120502124	120502324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023625, intron 1 of 11)	intron (NM_023625, intron 1 of 11)	1399.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	5.31579605259278	5.68549360476746	5.72189685802729	5.64219159551454	5.90687325298626	6.07899624768026	5.78770701506543	5.53134110773216	0.389671956842837	0.156451026254892	0.442362262564429
Merged-chr3-90000055-4	chr3	89999960	90000160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001165984)	TTS (NM_001165984)	1300.0	NR_045749	100503469.0	Mm.440636	NR_045749	ENSMUSG00000105552	Gm19710	-	predicted gene, 19710	ncRNA	6.35778110605517	6.55884143721341	6.18965601452972	6.12598825821455	6.25987251728154	6.30442533301774	6.27271693700307	6.20518766818135	-0.0756948320607177	0.744627945744327	0.899296643574982
Merged-chr12-44269719-4	chr12	44269619	44269819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026164, intron 1 of 9)	intron (NM_026164, intron 1 of 9)	565.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	6.85873088758407	7.27228211026858	6.91491378528324	6.88489440313447	7.0437757819451	7.26727720449956	7.26991138778907	6.9757408193831	0.206300959512407	0.3166941507803	0.628678291204261
Merged-chr16-35752058-4	chr16	35751954	35752154	+	691.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	RLTR13D|LTR|ERVK	17302.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	3.76477752780044	3.52726642237775	3.76531852699332	3.67686961092416	3.56840826083395	3.93610508631611	3.79913993846198	3.90761335837396	0.354170884555524	0.44673323135819	0.732386500100067
Merged-chr3-89340729-4	chr3	89340657	89340857	+	794.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037722, intron 20 of 22)	intron (NM_001037722, intron 20 of 22)	-2729.0	NM_007910	13639.0	Mm.16332	NM_007910	ENSMUSG00000028040	Efna4	EFL-4|Epl4|LERK-4	ephrin A4	protein-coding	3.28738372856177	3.45970012640923	3.28777728675981	3.51997876739429	3.44974427297729	3.45795850037022	3.38898463557473	3.2254452601984	-0.059916465553372	0.90865123113227	0.966100563913989
Merged-chr14-75229995-4	chr14	75229871	75230071	+	821.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001247984, exon 16 of 16)	3' UTR (NM_001247984, exon 16 of 16)	-12316.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	3.8071266603793	3.46397460898164	3.8076767581881	3.59673622022849	3.83195231364238	3.92901519088555	3.84147863753147	4.16067873104531	0.801479919886857	0.0804153989569842	0.307454889743738
Merged-chr10-75490930-4	chr10	75490833	75491033	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	26448.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	5.31311672914227	5.15224756830352	5.11791199321181	5.64004193701155	5.54890327832269	5.57478985737217	5.28770896395176	5.11446254425817	0.0981419804247407	0.758091604177383	0.904926340425875
Merged-chr6-125243816-3	chr6	125243721	125243921	+	861.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-6794.0	NM_001286753	21940.0	Mm.367714	NM_001033126	ENSMUSG00000030336	Cd27	S152|Tnfrsf7|Tp55	CD27 antigen	protein-coding	3.69151828039541	3.92980798707894	3.96070376812602	4.36691734748868	3.81946347327175	3.81065316755681	4.08023826143146	4.00593492832982	-0.266706201563713	0.573883734579346	0.811973307930812
Merged-chr9-37605842-3	chr9	37605762	37605962	+	710.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001324545, exon 4 of 5)	exon (NM_001324545, exon 4 of 5)	7858.0	NM_011449	20686.0	Mm.8637	NM_011449	ENSMUSG00000001948	Spa17	Sp17	sperm autoantigenic protein 17	protein-coding	3.69325688710243	3.6472831921052	3.63964960253353	3.91743540156991	3.48766515855969	3.51286923628098	4.07878683807428	3.74354773652791	-0.039131416831256	0.937887241199722	0.977460307804652
Merged-chr15-96641627-4	chr15	96641524	96641724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134086, exon 1 of 16)	5' UTR (NM_134086, exon 1 of 16)	338.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	6.5855849948399	7.04205336590608	6.74709762582507	6.82104432382764	7.04132696431398	7.19330453070643	7.07486869765116	6.9241536740511	0.341690329332667	0.0932885040305356	0.334063612637193
Merged-chr4-134764468-4	chr4	134764369	134764569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	3535.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	5.8097079517015	5.93078898044705	6.27842480768879	6.0888166105028	5.95530885137691	5.71651127148812	5.75655632884435	5.87837231835476	-0.324528223278061	0.202307392597744	0.504746975435225
Merged-chr9-55149252-4	chr9	55149150	55149350	+	961.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346657)	promoter-TSS (NM_001346657)	-119.0	NM_180600	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	4.79915104805122	4.84018261629968	4.76143989420708	4.73156813617064	4.67861626661836	4.97389285024101	4.91926094375796	5.15683471451737	0.311774645778564	0.347633884207268	0.655546119710951
Merged-chr10-59328041-4	chr10	59327929	59328129	+	983.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	4733.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	5.16880319837128	4.93610148863953	5.00414086582502	5.37153385322988	5.24393571208039	5.03096958814006	5.26153863658777	4.8524667857256	-0.063359715072057	0.845967976258847	0.941729947641239
Merged-chr2-6220320-4	chr2	6220216	6220416	+	772.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 1 of 6)	intron (NR_040333, intron 1 of 6)	-7322.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	3.28232045295533	3.44855498202169	3.34821166217699	3.38853490640585	3.74687165311261	3.85392876741634	3.80813625888447	3.58034394117012	1.20967194213478	0.012648016283499	0.0932732232742619
Merged-chr2-71353843-4	chr2	71353723	71353923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 2 of 17)	intron (NM_172436, intron 2 of 17)	13731.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	5.96838458245391	6.2617248582079	6.42452008157062	5.82463230769213	5.98056274660748	6.49935542624945	5.86894630674853	5.91869648741473	-0.0668560099585043	0.812356395959028	0.927508195245062
Merged-chr4-55651264-4	chr4	55651156	55651356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-118781.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	8.71496047836571	8.79963817285832	8.93719935563094	8.85434732536223	8.87772937370683	8.98730765943244	9.21923444700323	9.06743616125654	0.263820378178488	0.0831480031645841	0.313342462701748
Merged-chr8-120608014-4	chr8	120607886	120608086	+	886.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_197988)	TTS (NM_197988)	-18911.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	3.64687622914645	3.41282390548295	3.79287007998334	3.39297730809437	3.42902383186061	3.59976764558888	3.58041011904768	3.74391225990099	0.0904036642751182	0.856880586109493	0.946159157665131
Merged-chr8-4493952-4	chr8	4493833	4494033	+	953.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026058, intron 1 of 10)	intron (NM_026058, intron 1 of 10)	528.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	4.70000604463961	4.62777961920008	4.35395907696426	4.77357618935679	4.61165657107303	4.94526326132507	4.82085659048447	4.57838928524662	0.225146831370656	0.531222618367258	0.787095803840917
Merged-chr15-60825538-2	chr15	60825438	60825638	+	589.083374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162926)	promoter-TSS (NM_001162926)	-458.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	2.92571561183257	2.76538453886374	2.86792055175428	2.6556174446328	2.48261196033015	2.78304418300983	2.66753012076265	2.98001075922398	-0.310899353265831	0.643110462548797	0.849459897971419
Merged-chr10-67284921-4	chr10	67284811	67285011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036293, intron 1 of 3)	CpG	370.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	5.24548325109992	5.56937675384957	5.40325080875957	5.30911472073978	5.46520160132635	5.76741774545512	5.56640358358101	5.45715626389954	0.312223590489702	0.26244486678687	0.57424810151607
Merged-chr18-38003405-4	chr18	38003305	38003505	+	828.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4436.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	4.39670376891415	4.17315559987038	3.92714138556965	4.36895221886075	4.18102845794244	4.3092582905277	4.25439026044994	4.22673445956473	0.00224003839300225	0.995593853224549	0.998377456742254
Merged-chr7-34390925-4	chr7	34390824	34391024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1219.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	5.87473385825994	5.4938237077404	5.67009344995915	5.53583595276853	5.30781666520683	5.74122719209066	5.48386625927537	5.5893326596633	-0.192574776280172	0.493236015055916	0.764080496611928
Merged-chr5-30869602-4	chr5	30869504	30869704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144525)	promoter-TSS (NM_144525)	25.0	NM_144525	68796.0	Mm.205169	NM_144525	ENSMUSG00000038828	Tmem214	1110039B18Rik|4921530J21Rik|AI841294|AU018742|C76280	transmembrane protein 214	protein-coding	6.31837130153483	6.06731828626332	5.68506110214305	6.07618797891191	6.22758803229892	5.7778303364594	6.21674406433818	6.26235667786164	0.129736754005382	0.621115875303293	0.83769908458794
Merged-chr15-12214605-4	chr15	12214530	12214730	+	860.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 1 of 15)	intron (NM_001356498, intron 1 of 15)	9602.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	4.00514577763751	4.16638430475727	4.10239198098141	4.46023583931312	4.175329270314	4.12842090479606	3.77406356485662	4.00340808567483	-0.4584749548783	0.298201549463384	0.610320314800708
Merged-chr18-80194086-3	chr18	80193986	80194186	+	908.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_131039)	TTS (NR_131039)	6533.0	NM_199197	68731.0	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	3.60950406603156	3.70399598404772	3.45217193198592	3.65593957339196	3.05622497961435	3.62377439465054	3.38220066485816	3.13655875431182	-1.04883036938938	0.0604782924860711	0.259825228202925
Merged-chr6-88829789-4	chr6	88829679	88829879	+	988.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	12156.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	5.2773018948406	4.98198034621399	4.84480536679994	4.88461074924144	5.37597529292974	5.09636597287789	5.22374982689213	5.02540673468933	0.380202141476457	0.23035249547813	0.53971870463126
Merged-chr17-45558095-4	chr17	45557978	45558178	+	919.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008690, intron 1 of 5)	intron (NM_008690, intron 1 of 5)	2378.0	NM_001304956	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	5.33960461315995	6.30872915893967	5.07124494824918	4.57190630969369	5.86535350607905	5.73877796906917	4.96994128396441	4.82293734352089	-0.134821703546785	0.854927494242381	0.94540500742117
Merged-chr19-9110411-4	chr19	9110342	9110542	+	943.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22486.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	4.22854408049974	4.44943357653066	4.40329919005917	4.32571414452015	4.47290215621614	3.84679707890216	4.56957014474439	4.13001030943783	-0.140358467931215	0.741780691929551	0.898388354542756
Merged-chr2-163838252-4	chr2	163838164	163838364	+	920.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15486.0	NM_001030292	241769.0	Mm.295337	NM_001030292	ENSMUSG00000035238	Kcnk15	KCNK11|KCNK14|KT3.3|TASK5	potassium channel, subfamily K, member 15	protein-coding	4.28942054448231	4.68674304317234	4.29004741655376	4.82390728390097	4.65162613541726	4.60714345533336	4.94655245862773	4.23673039219509	0.162893861435036	0.692438076574114	0.87491802620234
Merged-chr13-5939534-4	chr13	5939422	5939622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78033.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	6.37843672539683	6.67936438968012	6.55250739344232	6.91798684433859	6.7116540080396	6.33627695117256	6.65598138939937	6.21744526470955	-0.226321009070042	0.354729006141939	0.661365305978239
Merged-chr4-126533524-4	chr4	126533343	126533543	+	929.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153177)	promoter-TSS (NM_153177)	15.0	NM_153177	76850.0	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	3.32441442477752	3.21655759885584	3.54718007944944	3.40693517433295	3.54027195783316	3.24029021793517	3.67503928352213	3.54511403376005	0.447075665901074	0.389529827426977	0.689795834965165
Merged-chr2-129297800-4	chr2	129297681	129297881	+	946.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181589)	promoter-TSS (NM_181589)	411.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	5.22864591281407	6.00465139345331	4.96666851954249	4.50870043319317	5.95938327543992	5.90526675685598	5.33203885395562	5.65607424023139	0.737545457528979	0.0719901690453443	0.288329295660509
Merged-chr9-120110783-4	chr9	120110688	120110888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144793, intron 1 of 6)	CpG	389.0	NM_144793	208638.0	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	6.90983428413041	6.97120702796962	6.2363033906746	6.54874123406135	7.09225123097031	7.12611258656316	7.20576798849286	6.85277208834743	0.530369786513247	0.0242265469706078	0.145398093323853
Merged-chr17-83631444-4	chr17	83631327	83631527	+	815.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153512, exon 1 of 2)	exon (NM_153512, exon 1 of 2)	468.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	4.02432581466087	3.86259799308258	3.72254470670329	3.8412004481827	4.08343785341667	3.89666777805241	4.00731068920285	3.88010799083313	0.309203900372844	0.474320006071635	0.75165330690546
Merged-chr11-70580204-2	chr11	70580104	70580304	+	799.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	PB1|SINE|Alu	17323.0	NM_016713	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	3.1058217024722	2.93500899260784	2.92909202317351	2.6196799924185	2.63409413767306	3.220521526216	2.91830318533347	2.98922691601247	0.213893021244429	0.744841412120381	0.899357438330432
Merged-chr8-111539978-4	chr8	111539861	111540061	+	924.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	MIRc|SINE|MIR	1618.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	4.60677624512474	4.2971568221564	5.05416055862791	4.76507356948653	4.46634019419943	4.28062477162809	4.42397513319057	4.20338578110237	-0.800415667162739	0.0463586445260033	0.221282320192891
Merged-chr13-37965527-5	chr13	37965345	37965545	+	951.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28763.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	5.40641488842588	5.31677358344241	5.6710639809703	5.47859357634638	4.75502735339377	4.75801072876196	5.0130916834372	5.03408968079691	-1.09921217747168	0.000419442425011903	0.00668207080795037
Merged-chr11-120938128-3	chr11	120938046	120938246	+	864.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5274.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	3.41629460553184	3.89462141580346	3.14244146406005	3.09053568843373	3.89503949508911	3.53483308372219	3.57671388418651	4.00486888227973	1.05494474606472	0.069348202678012	0.281598249667307
Merged-chr2-101922470-1	chr2	101922370	101922570	+	865.6666869999999	f0_balb.idr	Intergenic	Intergenic	36208.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	3.53239433049263	3.66671348979788	3.62977217555421	3.96258502757916	2.93215917290794	2.92894655626316	3.04313275218857	3.05087024635823	-3.14046419566121	3.9723146562835e-06	0.000121038264092296
Merged-chr17-56926995-4	chr17	56926910	56927110	+	857.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022328, exon 2 of 12)	exon (NM_022328, exon 2 of 12)	8378.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	3.64266751163023	3.46357151128259	3.58683094092256	3.73950225178265	4.08224464293268	3.86805904132584	3.62903247765809	3.74680748848729	0.681591824178215	0.15448435179747	0.439801241388062
Merged-chr10-117288414-4	chr10	117288299	117288499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013590, exon 4 of 4)	3' UTR (NM_013590, exon 4 of 4)	4469.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	6.72466107488761	7.15333802754362	7.00772069881649	6.84232755569033	6.67619930159878	6.77650223698287	7.06444117153599	6.6119196198692	-0.210351700892421	0.335217570577208	0.645574985284499
Merged-chr1-128722234-4	chr1	128722146	128722346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129947.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	8.56431969421621	8.86015840325709	8.59389647874128	8.53414226075299	8.65997901463315	8.68502388904943	8.71535894158201	8.54583481061864	0.012037261427614	0.938490797731867	0.977714035489638
Merged-chr15-41790825-3	chr15	41790740	41790940	+	789.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130163, intron 1 of 13)	MIR3|SINE|MIR	1325.0	NM_130885	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	2.98218686537116	2.93731721034191	3.09879696192427	3.1657468575075	2.73934041351422	2.96155354065909	3.03058139433668	2.98107666859613	-0.548493047845141	0.364407792865237	0.669265956462516
Merged-chr1-136170289-4	chr1	136170187	136170387	+	959.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 30 of 34)	intron (NM_001039472, intron 30 of 34)	38897.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	4.3782200692711	4.81640804328068	4.73634770432452	4.90858469778791	4.87869369349389	4.87151419213656	5.16486363142291	4.73325158183972	0.367396523361942	0.301045217708229	0.612994478573963
Merged-chr6-113657163-3	chr6	113657047	113657247	+	897.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	18680.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	3.88502196932872	3.79078536512901	3.26978269546296	3.28788326298947	3.46413502854867	3.44582396380814	3.49623882568415	3.61400340911226	-0.254021911862223	0.641765544700636	0.848885559099208
Merged-chr2-45111734-4	chr2	45111660	45111860	+	991.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110571)	promoter-TSS (NR_110571)	-500.0	NR_110571	433424.0	Mm.441408	NR_110571	ENSMUSG00000052248	Zeb2os	Gm13476|Zeb2nat	zinc finger E-box binding homeobox 2, opposite strand	ncRNA	5.42316593478744	5.85091408585658	4.95627376892919	4.54901696878618	5.60336839544227	5.57080483902078	5.50317908116371	5.17409743677303	0.330657538191944	0.398569658488523	0.696793179038619
Merged-chr14-121903946-3	chr14	121903885	121904085	+	731.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 1 of 8)	intron (NM_026861, intron 1 of 8)	11789.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	3.16483195797133	3.16376994690223	3.5839338334126	3.0571167645298	3.22418169798923	3.27811099036352	2.88474012125486	3.44054073637639	-0.11555091563117	0.847569986390461	0.942335253076034
Merged-chr12-116262982-4	chr12	116262887	116263087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146039)	promoter-TSS (NM_146039)	38.0	NM_146039	217935.0	Mm.31382	NM_146039	ENSMUSG00000042050	Wdr60	D430033N04Rik	WD repeat domain 60	protein-coding	6.2034132766503	5.96460025700587	6.5449291365334	6.57502074833702	6.07102641140038	5.97189081945635	6.21104616733649	6.18037249321815	-0.372049397571404	0.144639246235997	0.423797463707514
Merged-chr12-85437271-4	chr12	85437159	85437359	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36631.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	4.92716136571929	5.15615272223037	5.30576318305993	4.73903482961776	5.13867020231278	4.90909887617684	5.04210339548135	5.03010682814716	0.00816310094093863	0.980398134040653	0.99281244474172
Merged-chr19-8892990-4	chr19	8892887	8893087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176843)	promoter-TSS (NM_176843)	0.0	NM_176843	109077.0	Mm.290474	NM_176843	ENSMUSG00000071652	Ints5	1110055N21Rik|mKIAA1698	integrator complex subunit 5	protein-coding	5.28382018023912	5.76822415400368	4.71661175277766	4.64869081827499	5.4652702624083	5.46026337975356	5.42897828350767	5.47937993757446	0.487079424234343	0.19733011524319	0.498730968749601
Merged-chr15-97169601-4	chr15	97169561	97169761	+	896.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2417.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	3.37994196842073	3.440214428261	3.32330427270309	3.42547758677788	3.11131996756522	3.65478752877936	3.12572100279588	3.37855059054893	-0.229494283895605	0.676536636324822	0.867197108600875
Merged-chr6-72929999-2	chr6	72929899	72930099	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	28233.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	2.71589161009477	3.17272256226888	3.19484226278151	2.62579255788847	3.2321002226498	3.3671726138035	3.23750897174599	3.30320606283317	1.33336006267451	0.0372981599786761	0.192645361666221
Merged-chr18-12740735-4	chr18	12740640	12740840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181731)	promoter-TSS (NM_181731)	-615.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	5.99875976254586	5.31984868903605	6.04395007242458	6.37060211617517	6.16147822773079	6.38171885647879	6.39954587919701	6.23958255168102	0.449625565050713	0.130557578801967	0.402170679947429
Merged-chr2-62685451-4	chr2	62685346	62685546	+	957.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145523, intron 3 of 7)	intron (NM_145523, intron 3 of 7)	21119.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	4.17028965039195	4.68036987991099	4.22225841474701	4.08394950616715	4.59336029441301	4.54044007510459	4.69558747023025	4.64511210292198	0.719978704063382	0.0643642682932701	0.269604204840032
Merged-chr2-130578347-3	chr2	130578254	130578454	+	766.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	2185.0	NM_011025	18429.0	Mm.16745	NM_011025	ENSMUSG00000027301	Oxt	OT|Oxy	oxytocin	protein-coding	2.78404201448703	2.57649528243692	2.63761381918699	2.63797732932372	3.29233436288375	3.15061621371748	3.23393122383308	2.91544123901265	2.2255970426982	0.000425920683679925	0.0067680254141306
Merged-chr11-76456405-3	chr11	76456310	76456510	+	904.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 10 of 21)	intron (NM_001346670, intron 10 of 21)	12055.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	3.35071006249434	3.79333178208973	3.00148252163826	3.13910475481651	3.71872731395213	3.52820185121667	3.5101774876655	3.76791202720401	0.910054217814017	0.11751127181165	0.379145769288856
Merged-chr13-55024421-4	chr13	55024305	55024505	+	983.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3020.0	NM_001033245	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	5.40559557819572	5.42171490038563	5.07874205328238	5.60301321350593	5.61350503807134	4.92784048684272	5.66111311951488	5.61496529197886	0.156942625995687	0.627497420724461	0.841164852244315
Merged-chr14-120453277-4	chr14	120453162	120453362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-25199.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	6.13532763643201	6.19793260263348	6.0385543631318	5.54406760087769	5.88763417447133	5.63477693984791	6.12342728186312	5.4820237555747	-0.290562857778449	0.332493358597376	0.64349732915337
Merged-chr3-104780907-6	chr3	104780784	104780984	+	827.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027982)	promoter-TSS (NM_027982)	-172.0	NM_027982	71887.0	Mm.379204	NM_027982	ENSMUSG00000002228	Ppm1j	2310008J22Rik|PP2Czeta|Ppp2cz	protein phosphatase 1J	protein-coding	4.29643797326897	3.73688151636282	3.63122487125898	3.93741260559601	3.65508910993517	3.9673412535478	3.49738864981904	3.56993622356828	-0.708682897897128	0.161399605476222	0.450137455770754
Merged-chr12-32138530-3	chr12	32138446	32138646	+	695.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69792.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	4.24740436336844	4.10025326043779	4.0791265488384	4.3715739600205	3.99752822382355	3.70923434548009	3.86848294140756	3.58945728209519	-1.10333619539325	0.0164423792801927	0.112006135973283
Merged-chr18-25331242-4	chr18	25331142	25331342	+	869.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033532, intron 6 of 10)	Lx2|LINE|L1	162222.0	NM_001033532	225289.0	Mm.391081	NM_001033532	ENSMUSG00000033632	AW554918	4921538P22|AI461742|Kiaa1328|mKIAA1328	expressed sequence AW554918	protein-coding	4.13867537434692	4.2356733742975	3.99205705188699	4.02054917704993	4.36997763300754	4.30997355767255	4.02625788730974	4.1824369857879	0.352519984826725	0.384024006987492	0.685644380524807
Merged-chr2-132090019-4	chr2	132089932	132090132	+	880.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355431, intron 4 of 6)	intron (NM_001355431, intron 4 of 6)	55076.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	4.08393311419809	4.10529805875808	3.89067347503644	4.18061371706487	4.09535224096374	3.8424513961448	3.71015015144737	4.12615343801647	-0.309364585361903	0.484014759881379	0.758229781754884
Merged-chr6-129626119-4	chr6	129626092	129626292	+	888.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2328.0	NM_001286018	27007.0	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	2.88411489332965	2.940059026635	3.32543236264022	3.28777989545449	3.24327311645492	3.20202594086641	3.41314891739122	3.37581089771797	0.659386913736393	0.261802929277266	0.573733703910914
Merged-chr5-8422761-4	chr5	8422660	8422860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289595)	promoter-TSS (NM_001289595)	-44.0	NM_001190717	27214.0	Mm.292470	NM_013726	ENSMUSG00000002297	Dbf4	AA545217|Ask	DBF4 zinc finger	protein-coding	9.11568158411605	8.98427631760824	8.90891520311765	9.32100694519637	9.08683937634761	9.10206579621843	9.3072528866798	8.76123020665379	-0.0212424706135183	0.904489480629643	0.964559678221358
Merged-chr6-108829096-3	chr6	108828994	108829194	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_138677, exon 1 of 12)	exon (NM_138677, exon 1 of 12)	453.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	5.08820988817939	5.25054615526341	5.58306739712792	4.94674282019983	5.2925898299104	5.15717267369265	5.4025005679556	5.55485177542022	0.247188538495688	0.436368443496047	0.725104204892846
Merged-chr17-28420542-4	chr17	28420457	28420657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 5 of 10)	intron (NM_010220, intron 5 of 10)	-55341.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	6.39599162569521	5.88218976307314	6.47846045750723	7.02129621134281	5.71628132110862	5.72782318155068	6.12540910708138	6.21223555141167	-0.849170712042275	0.00660340906117425	0.058250595311107
Merged-chr16-91452748-4	chr16	91452657	91452857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12347.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	5.53053846392933	5.49085188046487	5.93693534789362	5.98930466402842	5.62824275214221	5.32210115454217	5.3868798553591	5.78138847108714	-0.370222990500218	0.21050819386718	0.514976722960957
Merged-chr19-42089410-4	chr19	42089293	42089493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1042.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	5.91013279870913	5.71712422182471	5.93421634593302	6.24281189481686	5.79483659319604	6.06384744034064	6.05356435985156	6.28529927122589	0.111770014438783	0.676700075548018	0.867245059450191
Merged-chr7-6286436-4	chr7	6286332	6286532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024928)	promoter-TSS (NM_001024928)	-148.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	8.6386628283226	8.67387766190698	8.67961021308936	8.47845578628703	8.53591759564481	8.59844838824024	8.89682789236373	8.50268722104687	0.032278431266945	0.843249872643123	0.940459539910433
Merged-chr8-24386649-3	chr8	24386547	24386747	+	870.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52299.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	3.21145727668876	3.2767508276878	3.21189538894437	3.02694533205036	2.91885278579052	3.00507860094964	3.08367231519876	3.31730235215979	-0.370455588798755	0.523041027086264	0.782330362002462
Merged-chr16-4754295-4	chr16	4754193	4754393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010443, intron 1 of 5)	intron (NM_010443, intron 1 of 5)	-2653.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	5.86673247154349	5.96110895700164	6.16601562865998	6.11308520156613	5.97343815299582	6.019533623065	5.93006821321611	6.04250718890622	-0.0750648881348625	0.752209854959673	0.902363969099289
Merged-chr4-129032318-4	chr4	129032227	129032427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25944.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	6.01151219533008	5.9114818193935	6.01257524994977	5.62883699319293	6.1306481480452	5.68325880922807	6.15659421048386	5.82836692776677	0.143331670271576	0.591907485628189	0.82185125857383
Merged-chr11-77317928-3	chr11	77317835	77318035	+	744.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 1 of 14)	MLT2B3|LTR|ERVL	-30345.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	2.99027382593568	2.83491219833128	3.04780197713268	2.90528461991135	2.97391811215159	3.10005952743065	2.65376884013485	2.8668320381097	-0.149539800097938	0.810011756130236	0.926763756021251
Merged-chr8-111259175-5	chr8	111258998	111259198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009149, exon 1 of 26)	exon (NM_009149, exon 1 of 26)	104.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	5.79134843607414	6.08190044959151	5.89266830275275	5.95854489482502	6.01586930103726	6.36656310870377	6.04121117596062	6.45980843650398	0.445664323301788	0.0740772324857259	0.293250398992191
Merged-chr11-50371509-2	chr11	50371409	50371609	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6210.0	NM_021510	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	3.31737414800546	2.77113224377812	2.70821618444332	2.6406309346279	3.38098468359543	3.09859774625986	2.97558577551049	3.04632432507923	1.03605564082449	0.11853015777273	0.380903881376893
Merged-chr12-24713911-2	chr12	24713811	24714011	+	942.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009104, exon 10 of 10)	3' UTR (NM_009104, exon 10 of 10)	5657.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	3.33317278202295	3.51453098536819	3.08848452991066	3.01327489983585	3.41481311942359	3.26576523334596	3.32056868037285	3.38640449177812	0.378381232257007	0.495551367631143	0.765852113611767
Merged-chr7-27472911-4	chr7	27472822	27473022	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133210)	promoter-TSS (NM_133210)	-918.0	NM_133210	170742.0	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	5.21891757350466	4.95203515779963	4.61072474017225	4.88229682918137	5.34891975233226	4.91865111141876	4.90980240078743	4.93016678951069	0.24120469659271	0.48456989248256	0.758679604821733
Merged-chr2-179975282-2	chr2	179975182	179975382	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081092, intron 1 of 14)	intron (NM_001081092, intron 1 of 14)	1364.0	NM_001081092	228980.0	Mm.235542	NM_001081092	ENSMUSG00000039117	Taf4	135kDa|AI450312|TAFII130|TAFII135|Taf2c1|Taf4a	TATA-box binding protein associated factor 4	protein-coding	3.36133050809309	3.18979942366651	3.06501377333647	3.26471232078908	3.27767964266765	3.36284662386218	3.29478989437115	3.24938210572813	0.252609728751873	0.635071708650906	0.845578277746738
Merged-chr9-40322478-4	chr9	40322379	40322579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	-1156.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	6.85699709076108	6.88532239698141	7.4595516579064	7.15819816215002	6.99751513545787	7.02150414317115	7.16397079754711	6.53612021480006	-0.223903941934852	0.343923982432106	0.652508599982271
Merged-chr15-59828617-4	chr15	59828535	59828735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33676.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	6.7944294227844	7.17426073132854	7.19820999395478	6.87246372560927	7.11245630995583	7.16455558667937	6.90071823052294	7.11552336743176	0.0846297471823371	0.677629298090957	0.867764888703673
Merged-chr3-103279719-4	chr3	103279626	103279826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_053170, exon 1 of 20)	5' UTR (NM_053170, exon 1 of 20)	433.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	7.11594905638496	6.90302931041795	6.77055563012198	7.12461517657995	7.18034833179785	7.18473189626169	7.27456833604872	7.33550111668576	0.338538651607083	0.0802973901982161	0.307157217387628
Merged-chr19-5118365-4	chr19	5118240	5118440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008451)	promoter-TSS (NM_008451)	68.0	NR_045528	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	6.92603329279186	7.16695903367749	6.82353796656383	6.71902172551157	6.54773544406052	6.64414461499493	6.53613074011205	6.32949828705503	-0.563645590751392	0.0101373042903625	0.0797043170312285
Merged-chr19-11740364-3	chr19	11740256	11740456	+	939.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7203.0	NM_008118	14603.0	Mm.456	NM_008118	ENSMUSG00000024682	Gif	AV073125	gastric intrinsic factor	protein-coding	4.13245749257373	3.91938117362667	4.4341792854653	4.06316603642461	3.74987099720253	3.67048780115868	3.72295806795702	3.84584072373058	-1.11748992355475	0.0151954671569231	0.10585223691159
Merged-chr12-31634651-4	chr12	31634580	31634780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164090)	promoter-TSS (NM_001164090)	-22.0	NM_001164090	12033.0	Mm.242379	NM_007530	ENSMUSG00000020650	Bcap29	AW208404|Bap29	B cell receptor associated protein 29	protein-coding	6.42689455048193	6.69545737039269	6.23647147335602	6.31411421021924	6.87825056319041	6.83065501995128	6.57602761586568	6.35029463191141	0.36802051652789	0.122085791033669	0.387242288214953
Merged-chr18-53862885-4	chr18	53862784	53862984	+	921.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 1 of 12)	CpG	771.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	4.40680513635013	4.45703022487346	4.73410184707621	4.41470659753471	4.51331411751371	4.62903722842841	4.90889406583744	4.76639174187315	0.449405950500309	0.212166901744777	0.517026529470078
Merged-chr10-77271067-4	chr10	77270971	77271171	+	937.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11771.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	4.93567186137528	4.58179954426172	4.90122800242363	4.9127547366565	4.92555877731226	4.71196571286603	5.24379071857488	5.06498978948243	0.313697702592844	0.352510004103839	0.659603301317223
Merged-chr18-32147632-4	chr18	32147525	32147725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8055.0	NM_001042767	19123.0	Mm.2786	NM_008934	ENSMUSG00000024386	Proc	PC	protein C	protein-coding	5.85286550114254	5.80213179175817	5.96749110197849	6.23437686099456	5.47091244907089	6.14219034442299	6.11760654238577	5.72506001245825	-0.167298937042274	0.562032565704693	0.805332984283731
Merged-chr9-124282219-4	chr9	124282113	124282313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30481.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	6.49220035999389	6.03885095423669	5.91318179488099	6.20027033605942	6.50269870985763	6.47929861621815	6.62427632306983	6.40590031527787	0.486791696085852	0.0384588264755932	0.196741469721593
Merged-chr7-6357741-3	chr7	6357640	6357840	+	854.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-5568.0	NM_001025163	330463.0	Mm.136456	NM_177888	ENSMUSG00000055150	Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding	3.39391533004756	3.63015419100251	3.39435721034878	3.10531759402303	3.4973611108092	3.24920868491793	3.68866219715612	3.65634797079711	0.496456318852113	0.358107378057308	0.664158134988955
Merged-chr2-166713051-4	chr2	166712929	166713129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	803.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	6.4173401126319	6.44882343926014	6.55156265560124	6.34413014750814	6.46679905602079	6.08753054321581	6.54909202134397	6.78975432131926	0.0925216817575667	0.69449492879085	0.87596715638729
Merged-chr11-86956608-4	chr11	86956505	86956705	+	868.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005341, intron 2 of 4)	intron (NM_001005341, intron 2 of 4)	37157.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	4.14703820144615	4.11514894133141	4.29081471324606	4.35822823437896	4.23548390222897	4.37256557105631	4.3156944180479	4.80028444765272	0.485782061603932	0.229220992878897	0.538064210405535
Merged-chr2-153164631-6	chr2	153164529	153164729	+	817.472229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	3328.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	4.52469819752531	4.52795472055671	4.10897841699327	3.92599124429975	3.79438110604497	4.0775160959336	4.13899003147643	4.41131214141516	-0.430398623888151	0.35048068574216	0.658055137870761
Merged-chr13-53219690-4	chr13	53219605	53219805	+	995.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013846, intron 1 of 8)	intron (NM_013846, intron 1 of 8)	66404.0	NM_013846	26564.0	Mm.342774	NM_013846	ENSMUSG00000021464	Ror2	Ntrkr2	receptor tyrosine kinase-like orphan receptor 2	protein-coding	5.18088955945734	4.91488464011626	5.34024424704547	5.60330831930265	5.0748345127713	5.10337776103177	5.91251905267984	5.55475396358718	0.283412888480013	0.431277165604934	0.721589896351691
Merged-chr9-118607368-7	chr9	118607368	118607568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	759.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.05325799136571	5.69064770952152	6.09022113835492	5.42846844609153	5.39653539586487	5.35348550021285	5.94554942141901	6.04906119356331	0.176097894699989	0.617277917932491	0.835467292651013
Merged-chr1-92973075-4	chr1	92972954	92973154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001104529)	promoter-TSS (NM_001104529)	-65.0	NM_001104529	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	7.49954758449761	7.37359233979298	7.53775169566374	7.764122089658	7.65335641474996	7.46451305483711	7.82604737727277	7.44793326320005	0.0648339280668717	0.735183902987267	0.895431262597044
Merged-chr12-35066748-4	chr12	35066641	35066841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	Lx8|LINE|L1	19552.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	6.24501079307844	6.06452368108131	6.19025623037242	6.50866092802128	5.53811221079414	6.11481261321439	5.99701233082556	5.91040318074303	-0.594382891668472	0.0249100226832339	0.148089075801378
Merged-chr3-52069435-2	chr3	52069335	52069535	+	668.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	35571.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	2.83414707990335	2.81078161203916	3.3431185792683	2.69098845185543	2.94188663900878	3.01228311582118	2.95513206873428	3.13958525147117	0.316063656788852	0.619917188790329	0.836911326019849
Merged-chr15-88509211-4	chr15	88509116	88509316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91086.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	7.96098024682368	7.68714428177837	8.05697919636861	8.2561227102555	8.04425673019198	7.95885830630444	8.24376257781326	8.12124160428976	0.105247560965858	0.572983880176542	0.811549489744027
Merged-chr4-12427762-3	chr4	12427679	12427879	+	833.366638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-255764.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	3.49044147809173	3.5041016473091	3.78619892386563	3.4549975117615	3.47622799160123	3.48910613168356	3.30206726357643	3.5431612000761	-0.342398034473931	0.498643012674692	0.767747590057983
Merged-chr14-63467805-3	chr14	63467701	63467901	+	662.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31407.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	3.91448425618056	3.53149137120466	3.82031231284256	3.6259170028082	3.91767885575945	3.6024085252215	4.1048185934376	3.48393419314355	0.236134895973214	0.635441744439918	0.845728109373985
Merged-chr11-61735512-2	chr11	61735412	61735612	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144806, intron 9 of 11)	intron (NM_144806, intron 9 of 11)	-14713.0	NM_001033227	109342.0	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	3.70227987638726	3.36745566774518	3.17801010707569	3.28638739890235	3.56508331735177	3.91706725940298	3.42400693261346	3.65167862507309	0.832375994771457	0.11367520885478	0.372870400510339
Merged-chr10-99616000-4	chr10	99615902	99616102	+	939.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038019, intron 1 of 2)	intron (NR_038019, intron 1 of 2)	6831.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	4.29151710986686	4.39336609989084	3.9640433581918	4.42316180908928	4.7504266732231	4.56159964129441	5.01599091156825	4.51205090741033	0.964708287242926	0.014752493925765	0.103587626037489
Merged-chr5-77193441-4	chr5	77193339	77193539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	17766.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	5.2814401416674	5.03873767548813	5.28234780952571	5.15006942105702	5.95268043379606	6.05588219107937	6.18907855623649	6.18346946225559	1.51515150892078	6.12259300387134e-09	3.40203003452426e-07
Merged-chr9-7734538-4	chr9	7734472	7734672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29505.0	NM_133739	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	6.53589554950246	7.46765302696069	6.72736413482094	5.80369669249018	7.08792969832662	7.18028900851617	6.67807567219961	6.26724701331353	0.103478268867295	0.847393182866854	0.94229862509259
Merged-chr14-66179152-4	chr14	66179055	66179255	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 5 of 30)	intron (NM_001162366, intron 5 of 30)	34669.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	4.93203677447351	5.53853375283239	5.41193071033163	5.01203230986527	5.4366927489743	5.03267673147723	5.05454856224121	5.1098072308539	-0.114076515652901	0.733814491238012	0.894662424580015
Merged-chr8-13907702-4	chr8	13907608	13907808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347316)	promoter-TSS (NM_001347316)	-31.0	NM_025785	66822.0	Mm.37950	NM_025785	ENSMUSG00000038365	Fbxo25	9130015I06Rik|AI649137|Fbx25	F-box protein 25	protein-coding	6.95118412313776	7.15736867605599	6.92506860168644	6.97200462897868	7.34457419736849	7.66064977731661	7.29756748459966	7.24664306791506	0.528644408801058	0.00645684557754012	0.0572985676803052
Merged-chr12-102398664-4	chr12	102398559	102398759	+	707.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 10 of 13)	intron (NM_011175, intron 10 of 13)	41154.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	3.68689340384531	3.76547474281477	4.13346996203598	3.62275817203269	3.93484698330461	3.75158962721246	3.23970722264612	3.51458850249136	-0.508303205565837	0.351059553561194	0.658551232419678
Merged-chr3-105816271-4	chr3	105816172	105816372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045845, intron 2 of 2)	intron (NR_045845, intron 2 of 2)	705.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	6.56170520816043	7.1107539661405	7.02493171135042	6.92330432189993	7.22145178877472	7.15121182251567	7.50215800779081	7.17247196029702	0.473075621285594	0.0244934804374536	0.146358415384277
Merged-chr13-13517061-3	chr13	13516935	13517135	+	879.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73374.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	3.71380624079776	3.36924573358828	3.42438091844039	3.64891376650302	3.38248220267538	4.20126817151543	3.7975958757884	3.81217841278727	0.818921564218947	0.120491040626589	0.384265951913617
Merged-chr5-137776635-2	chr5	137776535	137776735	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2269.0	NM_001356989	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	3.42062196028344	3.74910933739295	3.35882990907564	3.37837506999202	3.6817107409228	3.86239613633324	3.52357242006468	3.58984097024045	0.590813910846572	0.235661595360326	0.545646525172162
Merged-chr8-27058455-4	chr8	27058383	27058583	+	968.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15928.0	NM_054057	114863.0	Mm.277501	NM_054057	ENSMUSG00000031485	Plpbp	1700024N20Rik|2200002F22Rik|Prosc	pyridoxal phosphate binding protein	protein-coding	4.4511003770724	4.9687938371052	4.78231876998963	4.90868963715007	4.61110636201638	4.62736073306285	5.07597692052653	4.62365139915417	-0.110999004682994	0.762057492045845	0.906776947564005
Merged-chr10-51454142-4	chr10	51454044	51454244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26468.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	7.72099661052445	8.0384527767695	7.90731397811981	8.00654500831407	7.969331063785	7.9566360638095	7.92512280149511	7.64878876538584	-0.0594112103129448	0.733765162709697	0.894646551297515
Merged-chr3-95160363-4	chr3	95160247	95160447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001272024)	promoter-TSS (NM_001272024)	-73.0	NR_073550	20360.0	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding	7.52008546465537	7.57937691990155	7.30164453228096	7.49574656664717	7.10373033249104	6.94115785192096	7.27558619253067	7.18754284081864	-0.468532038527442	0.0117185560176987	0.0883690114189823
Merged-chr16-33951094-4	chr16	33951010	33951210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15928.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	6.64006403390322	6.86142868671273	6.74773930292438	6.93681367015086	6.66973688251634	7.17370198564979	6.47414048119007	6.77176372719181	-0.0246231925746279	0.914644049419223	0.96815300458935
Merged-chr1-58716800-2	chr1	58716700	58716900	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	3514.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	3.18106580197168	3.10544841957387	3.00560994270127	2.51114810261646	3.37476511711172	2.91258931613446	2.86478940323168	3.17965386943753	0.491729784437394	0.474320310285226	0.75165330690546
Merged-chr4-119540451-4	chr4	119540367	119540567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290696, intron 1 of 11)	intron (NM_001290696, intron 1 of 11)	806.0	NM_172699	230700.0	Mm.259227	NM_172699	ENSMUSG00000032998	Foxj3	C330039G02Rik|Fhd6	forkhead box J3	protein-coding	5.55310819464484	5.63114508030278	5.09511529220255	5.50825532023733	5.83447140288134	5.93106055189092	5.47008608407159	5.94863028732403	0.56964074034522	0.0471143189319933	0.223361536383399
Merged-chr8-109691857-4	chr8	109691751	109691951	+	885.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155034, intron 1 of 10)	RSINE1|SINE|B4	1443.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	4.08697020651649	4.26261995796625	4.33139684884969	3.72282327317271	5.08432656944808	4.36934205940955	4.58771383338657	4.13754487097176	1.14977839979294	0.0116836034947891	0.0881491250396959
Merged-chr2-27763580-4	chr2	27763482	27763682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011305)	TTS (NM_011305)	52999.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	7.72226592404625	8.02279917342102	7.98620239820568	7.94634355809505	7.77164484735287	7.53653157436816	7.69399885895333	7.44750479273562	-0.394161702395394	0.0260255222298502	0.152554611446801
Merged-chr14-54426879-4	chr14	54426777	54426977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026851)	promoter-TSS (NM_026851)	-32.0	NM_026851	68836.0	Mm.248163	NM_026851	ENSMUSG00000010406	Mrpl52	1110047B07Rik	mitochondrial ribosomal protein L52	protein-coding	6.39718601927047	6.09555638078965	6.034156996989	6.0902053885971	6.33359231443662	6.21034078966102	6.12940847955471	6.34302880260084	0.161172491583261	0.486848108212887	0.7603696580653
Merged-chr2-119050422-1	chr2	119050322	119050522	+	619.0	f0_balb.idr	intron (NM_029617, intron 1 of 23)	intron (NM_029617, intron 1 of 23)	3303.0	NM_029617	76464.0	Mm.202518	NM_029617	ENSMUSG00000027326	Knl1	2310043D08Rik|5730505K17Rik|Casc5	kinetochore scaffold 1	protein-coding	3.62247005524353	3.47787914807865	3.30436483946093	3.27094226466523	3.32056903354302	3.28865044828135	3.51131684276376	3.47211635805277	-0.0649680174712727	0.900969659553484	0.963325736633273
Merged-chr1-89069655-4	chr1	89069575	89069775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133816)	promoter-TSS (NM_133816)	-740.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	7.59026080800002	7.81864977907193	7.76624310393504	7.92806530675717	7.6563741847682	7.55558789223647	7.81088923325269	7.57742242619037	-0.176849617562119	0.314382237584222	0.626354487695056
Merged-chr16-65377317-3	chr16	65377218	65377418	+	644.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143311.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	3.59617835466531	3.36488553379968	3.59668110180718	3.45664672277821	3.7355321094109	3.91461957922192	3.41351830179672	3.5402206369991	0.518472282233867	0.296000649278749	0.607853870026531
Merged-chr3-89295726-7	chr3	89295649	89295849	+	988.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14798.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	4.55765360193658	4.20795318424598	4.59828716132476	4.6646777959736	4.47213269190631	4.73070572196345	4.53735345719098	4.74320648921452	0.204947538857714	0.580974616629854	0.816047207441467
Merged-chr16-94569079-3	chr16	94568977	94569177	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1129.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	6.79227510685171	6.83740649262909	6.71038562766797	6.12272154664864	6.52386894362772	6.54410714658393	6.54077774417334	6.52090765697018	-0.14214443239561	0.567000888533248	0.808119800518362
Merged-chr10-24950427-4	chr10	24950307	24950507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22937.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	6.1044431895822	5.71399803155337	6.55139203860256	6.36870762834736	5.73112166152899	6.03399555999493	6.20998221809793	6.16143689787453	-0.28421091433675	0.317182451578598	0.629008590755612
Merged-chr17-86128452-4	chr17	86128350	86128550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030133, intron 5 of 20)	L1MC4|LINE|L1	16725.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	7.42489665128482	7.64498032734052	7.67842778150794	7.9095819306121	6.93743289286731	6.93422906139789	7.46388041443018	7.14155634735878	-0.735630663886729	0.000526368155549559	0.0080468983985958
Merged-chr1-170576563-4	chr1	170576447	170576647	+	906.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 1 of 9)	intron (NM_001109985, intron 1 of 9)	13302.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	4.62974599986997	4.25298054167374	3.78639678768557	4.25755930248468	4.61770167107732	4.40429177498343	3.89646385565319	4.59255119340013	0.347194385883713	0.458293699387967	0.741196722451408
Merged-chr4-63410783-4	chr4	63410690	63410890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7345.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	6.60337637180372	7.34543827381138	6.49899626426103	6.99445167639913	6.931695728741	7.10684905807792	7.12024654144306	6.85832910617428	0.128357559069073	0.601991462221037	0.827379371863353
Merged-chr19-3923045-4	chr19	3922952	3923152	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026316, intron 2 of 9)	intron (NM_026316, intron 2 of 9)	6664.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	5.16511236403537	5.0595524432749	4.93827639256854	4.91458502793949	5.27892903524128	4.60510661552781	4.87880176404747	5.00424056793833	-0.0697345104351042	0.838235415714989	0.938633191613918
Merged-chr4-134372540-4	chr4	134372400	134372600	+	808.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019578)	promoter-TSS (NM_019578)	47.0	NM_001355493	56219.0	Mm.30978	NM_019578	ENSMUSG00000028838	Extl1	D430033M16Rik	exostoses (multiple)-like 1	protein-coding	3.96256613505504	3.67054721024864	4.04913586318321	3.70208982978211	3.28318528882243	3.83961452882588	3.59292393158412	3.91545517457133	-0.525951553381282	0.307077421449472	0.619334608547937
Merged-chr18-38338431-4	chr18	38338313	38338513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011937, intron 1 of 6)	intron (NM_011937, intron 1 of 6)	580.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	5.56914044221807	5.92319826821689	6.01031430481507	5.65858505893186	5.75909536457566	5.91058479466207	6.05903894710646	6.00601304556155	0.222705191881421	0.392763611129366	0.692117979418531
Merged-chr15-98830130-2	chr15	98830030	98830230	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016781, intron 1 of 11)	intron (NM_016781, intron 1 of 11)	1378.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	2.23106356482144	2.20179120776623	2.29232177968398	1.90273341603794	2.14164997700219	1.88840983325667	1.94957966733528	2.02823368207077	-1.07740027130615	0.224137205856306	0.532292211919326
Merged-chr2-10049391-6	chr2	10049285	10049485	+	837.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027748)	promoter-TSS (NM_027748)	-776.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	3.86501316210016	3.71099680935839	3.76762762595631	3.67915550763443	3.68897398623941	3.83466900251969	3.47261210473907	3.95400898291077	-0.0143235350428782	0.975689619736466	0.991347073148764
Merged-chr12-79144357-3	chr12	79144274	79144474	+	718.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	13586.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	3.27927866281587	3.36975059891429	3.16836537064288	3.10425954093715	3.10834458860382	3.21922572777367	3.03638464122517	2.91105647670219	-0.620612462796361	0.280940142296139	0.593119928473881
Merged-chr14-54752688-2	chr14	54752588	54752788	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	(CA)n|Simple_repeat|Simple_repeat	29198.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	2.12880601777267	2.34432231520758	2.20848946009346	2.23653270956753	2.42151908132738	2.65557598474164	2.47759145805191	2.5469713253048	1.6906823573487	0.0225511157230581	0.13875915162963
Merged-chr19-37376298-4	chr19	37376220	37376420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010615)	promoter-TSS (NM_010615)	-83.0	NM_010615	16551.0	Mm.42203	NM_010615	ENSMUSG00000012443	Kif11	Eg5|Kif8|Kifl1|Knsl1	kinesin family member 11	protein-coding	7.07376843091701	6.87467057700772	6.98884140669183	6.75400681080052	7.52512990763598	6.86640900699109	7.15254589306281	7.12808996576251	0.389183174901903	0.0752874068786748	0.296267267482154
Merged-chr6-113751323-4	chr6	113751226	113751426	+	897.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 19 of 19)	A-rich|Low_complexity|Low_complexity	-10645.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	4.46076003105397	3.9515290671183	4.42253313518161	4.27270404943998	4.29278223887856	3.88955803274718	4.36207601137666	4.49626518601395	-0.0147021957004242	0.972546474438352	0.990115073860739
Merged-chr10-44729613-4	chr10	44729518	44729718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-270870.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.19064143383662	6.65125260722602	6.13147499857655	5.82602112072342	6.41103583505617	6.40584388520623	5.97091478909863	5.85281008414661	-0.0595277884895285	0.838395357293649	0.938702643210241
Merged-chr6-127151784-4	chr6	127151667	127151867	+	984.1785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009829)	promoter-TSS (NM_009829)	-719.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	4.63481062848468	4.57091708360907	4.85163034185171	4.61451308185401	4.6077639939752	4.80792049715795	4.72548313852859	4.22070378248684	-0.129065409525862	0.726218527832709	0.891034932051019
Merged-chr10-34089616-4	chr10	34089530	34089730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162937, intron 4 of 6)	intron (NM_001162937, intron 4 of 6)	6889.0	NM_178908	103511.0	Mm.66334	NM_178908	ENSMUSG00000049872	Fam26e	BB146404|Calhm5	family with sequence similarity 26, member E	protein-coding	5.71355604341335	5.3594285947906	5.18643859441088	5.49682342500449	5.34405608036526	4.6535912884939	5.16098471762115	5.27755791802887	-0.557719632678294	0.0932572103717971	0.334038198180806
Merged-chr1-138138011-3	chr1	138137917	138138117	+	817.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	37109.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	3.62961830170356	3.85505844689283	3.63012015434031	3.56009416673138	3.8561089684697	3.44850062490058	3.38831446365705	3.62809049357475	-0.204815380117094	0.685599708349203	0.871496207596756
Merged-chr1-65177163-4	chr1	65177061	65177261	+	954.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111320, intron 1 of 8)	intron (NM_001111320, intron 1 of 8)	1981.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	4.56822170306065	4.54557417853002	4.48532827721426	4.53200293974994	4.69550775719924	4.89095238474433	4.54789435048189	4.39323343851818	0.245421453261116	0.492960792147923	0.763938434266553
Merged-chr3-69223783-3	chr3	69223656	69223856	+	919.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027843)	TTS (NM_027843)	1337.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	3.95356063878258	4.08226646687659	4.05103640332418	3.94845664636632	4.34485671447559	3.91361657952163	3.93783292658317	3.95184603344067	0.153908933638565	0.722131656621764	0.889141811997836
Merged-chr12-16580240-3	chr12	16580180	16580380	+	791.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355598, intron 2 of 20)	intron (NM_001355598, intron 2 of 20)	9490.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	4.07604412402675	3.7490628010936	3.87326240142797	3.89262262347714	3.61043637335606	3.14578735661721	3.38411721467758	3.26021415895416	-1.73481001917855	0.00214808466530523	0.0247248574372187
Merged-chr13-37498210-4	chr13	37498137	37498337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152892.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	6.67689651865626	7.05127188885617	6.65275640713407	6.40622848332703	5.02243273821444	4.70488694456054	4.99577529655837	4.92579452530799	-3.01037298022783	2.76009201537152e-21	1.09754519308452e-18
Merged-chr15-36282596-2	chr15	36282496	36282696	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357631, intron 1 of 7)	CpG	551.0	NM_013923	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	5.2472855957869	5.2197604837944	5.52679292509218	4.92428121728201	5.19717469240295	5.48253697098146	5.22223039273875	5.33469820226005	0.148246587997455	0.635762139725631	0.845880469242414
Merged-chr14-34502032-2	chr14	34501932	34502132	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009758, intron 1 of 12)	CpG	514.0	NM_009758	12166.0	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK-3|ALK3|AU045487|BMPR-1A|BMPR-IA|Bmpr|SKR5	bone morphogenetic protein receptor, type 1A	protein-coding	3.75242588800699	3.60636134692614	3.703079635968	3.59899151376698	3.54369103635021	3.65693480564185	3.52744518806485	3.84487778941769	-0.0482988082719137	0.918809023259577	0.970137918006816
Merged-chr12-116460581-4	chr12	116460483	116460683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133762, exon 29 of 29)	exon (NM_133762, exon 29 of 29)	-25137.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	6.20878580206583	6.24364158515365	6.4681165038484	6.97427936151361	6.90256733555206	7.16629988704493	6.9785903528866	6.80746514773728	0.611144325492528	0.0182809688199791	0.120576276060099
Merged-chr10-62219032-3	chr10	62218940	62219140	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	intron (NM_197996, intron 1 of 7)	12178.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	4.28896560537988	3.80760167609344	3.60342973450762	4.2652375979281	3.89761153925822	3.65928638124008	3.64867098443753	3.47538335200207	-0.987790083892837	0.0575670762640614	0.251817042858876
Merged-chr19-56256966-4	chr19	56256855	56257055	+	920.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30957.0	NM_001329936	226243.0	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	4.08907102841374	4.08334010402394	4.08968150914303	4.17077733769533	4.14192114894453	3.83296186123151	3.87272352858897	4.37738283233623	-0.0848135652750888	0.843903250046387	0.94088019607581
Merged-chr15-50827539-4	chr15	50827445	50827645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 3 of 5)	intron (NM_001310481, intron 3 of 5)	61504.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	6.48724027211659	6.10104277109998	6.42250693322402	6.47179622669731	6.75465131741573	6.29532259331667	6.26586263688484	5.74195842544385	-0.0794213417989963	0.778740653135059	0.913781420202775
Merged-chr10-81138339-4	chr10	81138224	81138424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	2053.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	6.81968161917541	6.98115059554606	6.67644306308106	6.62507789367472	6.81599005741579	6.98316187845967	6.65755800482556	6.41841575668318	-0.0590839500203669	0.791932475827809	0.919401124049459
Merged-chr9-105648564-3	chr9	105648482	105648682	+	856.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081309, intron 2 of 19)	intron (NM_001081309, intron 2 of 19)	5587.0	NM_001081309	75669.0	Mm.274830	NM_029380	ENSMUSG00000032571	Pik3r4	2210010O15Rik|C730038E05Rik|C85833|D9Ertd418e|Vps15|p150	phosphoinositide-3-kinase regulatory subunit 4	protein-coding	3.84026031138068	3.7529593504915	4.01270466360343	4.41044945308938	2.85476816233136	3.32293322739666	3.26454894228445	3.04810100524018	-3.72946762675807	3.39030937962996e-07	1.30020922054246e-05
Merged-chr11-75429200-4	chr11	75429101	75429301	+	982.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6578.0	NM_011340	20317.0	Mm.2044	NM_011340	ENSMUSG00000000753	Serpinf1	AI195227|EPC-1|Pedf|Pedfl|Sdf3	serine (or cysteine) peptidase inhibitor, clade F, member 1	protein-coding	5.05966872448243	5.25944231420189	4.79284658478996	5.43683085677201	5.01774327809244	5.33333547181685	5.10276051407671	5.21886833106991	-0.0250692102235837	0.939344177308153	0.978065281293421
Merged-chr2-174672690-4	chr2	174672629	174672829	+	865.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099328, intron 3 of 4)	intron (NM_001099328, intron 3 of 4)	29195.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	3.79718765679319	4.05220592077085	3.74369717229102	3.61456795461575	4.07720100185937	4.02115567799826	3.7290820760325	3.89713639825294	0.391428417407981	0.3917000982003	0.691351450352092
Merged-chr3-89339569-4	chr3	89339465	89339665	+	913.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009614)	TTS (NM_009614)	-1537.0	NM_007910	13639.0	Mm.16332	NM_007910	ENSMUSG00000028040	Efna4	EFL-4|Epl4|LERK-4	ephrin A4	protein-coding	3.54695648353289	4.06804215523712	3.4149218921685	3.85605772248251	3.97324720535007	3.6650624003509	4.04473146079296	4.14285798857819	0.598448121260802	0.237150533869041	0.547299026968193
Merged-chr2-122763216-4	chr2	122763122	122763322	+	975.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2137.0	NM_001162503	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	4.74197921055541	4.77621782104184	5.04109167185478	4.83811559565595	5.99040161523097	5.95232775055933	5.87136055763266	5.59002989913081	1.78220652766351	6.90611573644709e-10	4.58554488810231e-08
Merged-chr9-119923506-2	chr9	119923406	119923606	+	815.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026236, intron 17 of 18)	intron (NM_026236, intron 17 of 18)	14052.0	NM_028976	74498.0	Mm.104789	NM_028976	ENSMUSG00000032513	Gorasp1	5430411C10Rik|GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding	3.4042407321894	3.73541866493804	3.57661764339646	3.17675664506971	3.56172267110281	3.74798374074168	3.56207390435386	3.62711481954488	0.469042113119278	0.363050767071927	0.668224828025773
Merged-chr16-17759619-4	chr16	17759522	17759722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145479)	promoter-TSS (NM_145479)	1.0	NM_001359068	224023.0	Mm.282807	NM_145479	ENSMUSG00000022750	Klhl22	2610318I18Rik|Kelchl	kelch-like 22	protein-coding	5.78483331779138	5.70339221285967	5.35745836826243	5.77716066894898	5.80669523130143	5.88671653122117	6.01674951989625	6.10111516988046	0.446630066192569	0.0887417152165452	0.325111844583051
Merged-chr6-38871191-4	chr6	38871006	38871206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	5084.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	5.33461851581283	5.46850617843844	5.59240798242782	5.43838247173123	5.62245015809233	5.4480697703886	5.58959380259157	5.71130531480825	0.239847199581332	0.369975961958357	0.674172315709229
Merged-chr16-35768954-3	chr16	35768862	35769062	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153550, exon 1 of 9)	exon (NM_153550, exon 1 of 9)	394.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	4.85681017633235	5.00259179890345	5.09835701187603	5.20561035385808	4.70799368764124	5.26968513545969	4.63211296117814	4.96305187319061	-0.292680695838833	0.396762349929092	0.695372415340369
Merged-chr6-129237568-2	chr6	129237462	129237662	+	733.0	f0_balb.idr|f0_c57.idr	intron (NR_040268, intron 2 of 3)	intron (NR_040268, intron 2 of 3)	483.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	3.40616747277143	3.63879243437618	3.40657067260909	3.4028733748777	3.91368724206104	3.86400747767522	3.51542942888084	3.96703790160062	1.119400465578	0.0207688961767355	0.13135856237461
Merged-chr2-122118419-4	chr2	122118322	122118522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145531)	promoter-TSS (NM_145531)	-36.0	NM_145531	214585.0	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	SPG11, spatacsin vesicle trafficking associated	protein-coding	8.60560474713223	8.56266090672562	8.51792031150802	8.5768909146807	8.43008444123431	8.51835917612968	8.52621032296413	8.51728030087275	-0.0883138652773331	0.534950480496013	0.789518367971342
Merged-chr9-121299451-4	chr9	121299449	121299649	+	777.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	2047.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	3.10725546734911	3.00398540634483	3.38709118373551	2.78073800881991	3.26109347698807	3.39765087023909	3.21384169940554	3.04237580154424	0.602481888341938	0.314202698755883	0.626302441814249
Merged-chr7-16274099-2	chr7	16273999	16274199	+	999.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136270)	promoter-TSS (NM_001136270)	-407.0	NM_001136270	66300.0	Mm.218698	NM_001136270	ENSMUSG00000091811	Inafm1	2610014I16Rik|Prr24	InaF motif containing 1	protein-coding	2.89985706665567	2.80541542079262	2.90021437394095	2.74112348998352	3.00512701473264	2.80802732196926	2.88988185553944	3.01520521139093	0.466072219834719	0.435974851525561	0.724943317639126
Merged-chr17-71003392-2	chr17	71003292	71003492	+	861.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026064)	promoter-TSS (NM_026064)	-859.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	2.92839676965101	2.71966979126475	2.79901741180649	2.73155730246729	3.06282590779868	3.03818460753563	2.91821975807868	3.15287420490196	1.11496729305836	0.0593795319129487	0.256841012520161
Merged-chr11-48787956-4	chr11	48787852	48788052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12408.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	7.45523053489096	7.65536274540113	6.96408472187676	7.36975224135863	7.75911450916217	7.46160602406328	7.5366570479029	7.27906674588422	0.185376179540832	0.389999615755838	0.690232797500742
Merged-chr9-85396698-2	chr9	85396598	85396798	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69548.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	2.65175345687369	2.56310324556478	2.65208937984448	2.4469966367765	2.64688090556337	2.62680251970228	2.58046088712226	2.45267626137079	0.037712060208536	0.955223893634832	0.984075265351039
Merged-chr8-117263566-2	chr8	117263466	117263666	+	887.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	6547.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	2.78876274003508	2.68939107587937	2.78913901471044	2.48655037374875	2.65100499910363	2.77158983052867	2.65624017276423	2.52751784610089	-0.160602026162471	0.809751221111373	0.926644407837403
Merged-chr11-68475407-4	chr11	68475285	68475485	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 2 of 18)	intron (NM_177320, intron 2 of 18)	-27634.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	4.46994431213932	4.30770826523402	4.2251399082239	3.98991108894175	4.46478025211787	4.10092392505927	4.25034172836203	3.97490244577677	-0.0642408925108593	0.880504011654749	0.955181994949486
Merged-chr12-111676919-4	chr12	111676810	111677010	+	936.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1195.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	4.57828320677003	4.30916711964996	4.32666303335068	4.64177681613549	4.33151125426182	4.35795531119422	4.3529513130794	4.81766386996484	-0.00853393183662171	0.982631916886002	0.993821106189047
Merged-chr5-5319975-4	chr5	5319879	5320079	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-53911.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	4.42298612072289	4.2845139034754	4.51353810303878	4.670975119334	4.58959876289091	4.601358824217	5.09632303094511	4.88411341447939	0.667525333041956	0.0757568551859187	0.29735839832792
Merged-chr3-37654414-4	chr3	37654526	37654726	+	790.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14679.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	3.08536671835069	3.21124906630428	3.08577358114873	2.80289210675516	2.9272406748263	3.31274154701909	2.88588151177892	3.02362293600231	-0.0150335888446712	0.98029967435075	0.99281244474172
Merged-chr16-92787165-4	chr16	92787032	92787232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	38942.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	6.16612325988868	5.95990079581536	6.47214037614432	6.79898662157432	5.8871280930248	5.77686535143139	5.37527946261938	5.62116613924167	-1.12419085552825	0.000169901973366559	0.00317580161824009
Merged-chr3-148810730-3	chr3	148810635	148810835	+	963.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	143900.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.07220871293795	3.86461372745358	4.1573571686826	4.25475565481009	3.67691142228238	3.78303011189493	3.70893541728881	3.83077424910703	-1.01728582695841	0.0242511403295869	0.145520869234743
Merged-chr6-146479398-3	chr6	146479245	146479445	+	912.4682619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 1 of 56)	intron (NM_019923, intron 1 of 56)	22878.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	3.0477279828165	3.11831122405611	3.34984338514261	3.19788580067748	2.59575845421664	2.59788825334858	2.72036107151002	2.72692939458946	-2.75244849562636	0.000224990725120444	0.00401042284714924
Merged-chr19-45074746-11	chr19	45074666	45074866	+	987.636353	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362398)	promoter-TSS (NM_001362398)	-475.0	NM_001362398	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	5.00925651322579	4.6946094683232	4.55655981937253	4.35271126451977	4.72204856264633	4.73102271427972	4.40471596265787	4.5948637371719	-0.0833683629115221	0.827164931573881	0.933692357266283
Merged-chr16-95893903-2	chr16	95893803	95894003	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040484, intron 1 of 3)	MTE2b|LTR|ERVL-MaLR	4810.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	3.44908243159572	3.63318452980558	3.67858598213729	3.98857833557169	3.68266143698178	3.62563058358806	3.81057660811284	3.67653879120375	-0.0610658875901625	0.901904884302827	0.96359592566706
Merged-chr11-103132206-4	chr11	103132115	103132315	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1124.0	NM_001130516	71059.0	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	4.63529136750866	6.01698097256257	5.22866572337124	4.4605829003365	5.22533308810556	5.71141661082229	5.29367601684304	5.25638409001815	0.241507520753794	0.711269090218217	0.884400328622447
Merged-chr8-119356841-2	chr8	119356741	119356941	+	917.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	12303.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	3.1389827908634	3.42404717636272	3.13934835303314	2.91585863292806	3.45597495771213	3.49079514586495	3.30714036908078	3.31841207454712	0.872829985579817	0.11578198138411	0.376536101473002
Merged-chr3-7535322-4	chr3	7535204	7535404	+	780.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173181, intron 7 of 8)	intron (NM_173181, intron 7 of 8)	31878.0	NM_173181	67306.0	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	4.04304320011514	4.01679783125759	4.23001225411648	4.56264175810143	4.31380417782645	4.0614364089862	4.12236291978495	3.93712666500574	-0.319682429809309	0.470102121683832	0.748895479495389
Merged-chr18-62183850-4	chr18	62183742	62183942	+	758.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013754, intron 1 of 1)	intron (NM_001013754, intron 1 of 1)	3742.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	4.09274894694276	4.17160710468804	3.68055432372176	3.56738065270912	4.10718221986393	3.67301691909748	4.2383635821144	4.04589447042325	0.37291148989052	0.444120238585605	0.730548859870038
Merged-chr9-98333384-4	chr9	98333275	98333475	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357445, intron 1 of 3)	MTD|LTR|ERVL-MaLR	36805.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	5.57057492171851	5.38284547233278	5.97595064143079	6.02437766102158	5.34930458496026	5.15946385612215	5.2147357600219	5.61951262398336	-0.732241222754707	0.0187108099447308	0.122454647026112
Merged-chr1-169531536-4	chr1	169531416	169531616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023284)	promoter-TSS (NM_023284)	-52.0	NM_001355159	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	8.00137687396013	8.23692819201081	7.9612371260628	7.989401973524	8.20932643689926	8.25930131436372	7.83598742288918	7.79896137570074	-0.00798322015483242	0.965800874780697	0.987967297088546
Merged-chr10-19506155-4	chr10	19506062	19506262	+	936.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152784, exon 3 of 4)	non-coding (NR_152784, exon 3 of 4)	11519.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	4.70767869124109	3.98712855976464	4.19676572961521	4.6617965780243	4.36836311630404	4.11180335166255	4.39838663829419	4.19425838044018	-0.367135567630085	0.397857644532853	0.696091961758079
Merged-chr11-34389717-4	chr11	34389624	34389824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025382, intron 1 of 3)	intron (NM_001025382, intron 1 of 3)	74902.0	NM_001025382	574403.0	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	6.54759302235693	6.44585606238205	6.76618263948764	6.98405998347238	6.02578794751881	5.88761825903655	6.53082890456782	6.39292534209221	-0.707038293324369	0.00659434075661813	0.058177811194264
Merged-chr9-94362777-4	chr9	94362678	94362878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	175303.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	5.95802992739107	5.90805593119187	6.64237817581411	6.95717511547813	6.17235322235735	6.03811010141138	6.55027779846048	6.36862645679834	-0.242278712913369	0.441056015633018	0.728379224700288
Merged-chr3-139205722-4	chr3	139205644	139205844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198659)	promoter-TSS (NM_198659)	-149.0	NM_198659	381476.0	Mm.188334	NM_198659	ENSMUSG00000047940	Stpg2	B930007M17Rik|Gm1017	sperm tail PG rich repeat containing 2	protein-coding	6.65866005384799	6.38968974737451	7.22074918449355	6.70719799133416	6.75479239296224	7.30081542385376	6.97300486438482	7.18449334767229	0.402515695553971	0.108178579525801	0.363004106735198
Merged-chr13-33047651-4	chr13	33047539	33047739	+	912.345825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	20225.0	NM_011452	20706.0	Mm.45371	NM_011452	ENSMUSG00000021403	Serpinb9b	1600019A21Rik|R86|SPI-CI|Spi10|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9b	protein-coding	4.43014050618594	4.20684899672952	4.61103775706065	4.91743768190335	4.77143570762312	4.56363731334786	5.17899505298171	5.17538136369986	0.741185919971045	0.0683444858167175	0.279190209797519
Merged-chr2-93597956-4	chr2	93597874	93598074	+	934.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44460.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	4.74914776268335	4.39362194602927	4.99765547104864	5.18388243930067	4.85661482350925	4.67140196098606	4.90775601388062	4.92833658180107	-0.0695531176735126	0.851899079539007	0.944197763698899
Merged-chr14-14706642-4	chr14	14706446	14706646	+	926.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360513, intron 1 of 25)	intron (NM_001360513, intron 1 of 25)	3521.0	NM_001360509	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	3.03549843549308	2.88812224460174	3.16519772403477	3.59808276431787	2.94229395832974	3.50672041800034	3.27008286716193	3.38904535873358	0.294381602809728	0.650309304409683	0.853226674764141
Merged-chr14-31181835-4	chr14	31181739	31181939	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022656, intron 13 of 20)	intron (NM_022656, intron 13 of 20)	-13198.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	5.58733556087464	5.46747040305231	6.79915831899628	6.0862619777402	4.89724647292085	5.27968445964262	5.47482783776274	5.52810673971016	-1.2961831658921	0.000673868153701719	0.00980483673596375
Merged-chr10-51518088-4	chr10	51517993	51518193	+	898.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	27195.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	4.48500428545299	3.92940281962464	4.63026015054164	4.54766943276231	4.41844637500034	4.26114550307823	4.16653307380887	4.02800491059849	-0.464871523578167	0.281422984732956	0.593539495971536
Merged-chr5-86172079-1	chr5	86171979	86172179	+	763.0	f0_balb.idr	intron (NM_172712, intron 1 of 32)	intron (NM_172712, intron 1 of 32)	664.0	NM_172712	231380.0	Mm.34012	NM_172712	ENSMUSG00000035898	Uba6	4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2	ubiquitin-like modifier activating enzyme 6	protein-coding	3.75496656510023	4.19472203567464	4.00764511092878	3.59597682846559	4.09115189318936	4.17739513033832	3.62602464107565	3.637481045062	0.0182915005171635	0.970955321975859	0.989555055159975
Merged-chr14-20576322-3	chr14	20576227	20576427	+	835.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030180, intron 13 of 20)	intron (NM_030180, intron 13 of 20)	-29754.0	NM_008914	19056.0	Mm.274432	NM_008914	ENSMUSG00000021816	Ppp3cb	1110063J16Rik|Calnb|CnAbeta|Cnab	protein phosphatase 3, catalytic subunit, beta isoform	protein-coding	3.88179996704923	3.91054032311052	3.38995475886367	3.73030422077907	3.51302396388756	3.7497458631854	3.67125718379302	3.78576963956014	-0.199302947415366	0.684436539712473	0.870747319611953
Merged-chr8-22658105-4	chr8	22657906	22658106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4569.0	NM_011130	18970.0	Mm.123211	NM_011130	ENSMUSG00000031536	Polb	A430088C08Rik	polymerase (DNA directed), beta	protein-coding	5.28405918376114	5.34790641796427	5.53822923218432	5.35761427460062	5.33285017347505	5.65882013611958	5.51012499990398	4.75086061318481	-0.0529792374727069	0.871027455938664	0.951515750732959
Merged-chr12-17680441-4	chr12	17680327	17680527	+	886.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10382.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	4.68131701572535	4.11277643641225	4.37496412479946	4.53674815848432	4.22297220669439	4.5041013870219	4.35530397254056	4.37221536739633	-0.198696129490147	0.614309815453777	0.833796543880561
Merged-chr10-54060023-4	chr10	54059911	54060111	+	978.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	15785.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	5.04277749498593	4.93591561581708	5.10916411052325	5.41937975427744	5.1762160973876	4.87773643486934	4.98541319373661	4.86010568584132	-0.320720005169932	0.333134845114878	0.64399149963087
Merged-chr17-43055488-3	chr17	43055383	43055583	+	844.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 3 of 5)	B1_Mus2|SINE|Alu	38928.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	2.98968148543304	2.72256337469488	2.93702705499787	3.17532992550835	2.39753301705625	2.42890111493152	2.4815856069023	2.56079216943889	-3.08244653924563	0.000301246054539409	0.00508957819037755
Merged-chr7-89419127-1	chr7	89419027	89419227	+	783.0	f0_balb.idr	Intergenic	Intergenic	-7179.0	NR_102276	101521.0	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	3.31468452843121	3.54654377569275	3.37648185057642	3.72789758044744	3.41758466510134	3.48950725508252	3.58186828404628	3.59462013098493	0.00825202397577024	0.987237441805873	0.995258250959001
Merged-chr7-109613951-4	chr7	109613839	109614039	+	971.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001326, intron 1 of 19)	intron (NM_001001326, intron 1 of 19)	2629.0	NR_037617	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	5.17998696442723	5.27949900615725	5.11509379245881	4.84701351390048	5.49822238956831	5.53186066529393	5.21736701427798	4.89166931289051	0.39171945269451	0.232630425902931	0.542240596173323
Merged-chr8-93933029-2	chr8	93932929	93933129	+	805.583313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113384, intron 3 of 7)	intron (NM_001113384, intron 3 of 7)	79611.0	NM_011787	23802.0	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	3.33419687584203	3.06272199000943	3.06078531668401	3.11092965556611	2.96220498341836	2.89740277761623	2.98829311494797	3.28251744643382	-0.422495285764611	0.473465435460075	0.751223284962802
Merged-chr8-70630901-4	chr8	70630813	70631013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011819, intron 1 of 1)	intron (NM_011819, intron 1 of 1)	1182.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	6.59726464956327	6.57632009736647	6.97909504118423	6.96752289906911	7.11362260918587	7.10433039338936	7.24428444746065	7.16143769226838	0.486981662790833	0.0184225128972	0.121203072881948
Merged-chr4-102543157-4	chr4	102543037	102543237	+	917.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-26923.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	3.51987986488873	3.94004367443429	4.6720165418687	4.21885126682272	4.08787945243307	4.18432457295941	3.88560231514606	4.36151014599735	-0.0323448986654951	0.950629609534352	0.982312550074733
Merged-chr5-67450306-7	chr5	67450189	67450389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-13609.0	NR_110363	320479.0	Mm.387187	NR_015582	ENSMUSG00000107385	C330024D21Rik	-	RIKEN cDNA C330024D21 gene	ncRNA	5.360555337395	5.222708382151	5.85621111730539	5.2864420853169	5.48101040932202	5.62357487891199	5.44972455461847	5.29573463817589	0.0397679017208352	0.895701932651325	0.96094968595226
Merged-chr7-12903785-3	chr7	12903688	12903888	+	799.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001001447, exon 2 of 3)	exon (NM_001001447, exon 2 of 3)	5979.0	NM_001290441	232878.0	Mm.40706	NM_001001447	ENSMUSG00000054715	Zscan22	AW227621|D530006B18Rik|Hkr2	zinc finger and SCAN domain containing 22	protein-coding	3.36024412531894	3.38902645224498	3.83946911903957	3.71913702921704	3.31762510952656	3.21594050736829	3.16371054101229	3.23740505427759	-1.27754095131187	0.0219730617414305	0.136416970056108
Merged-chr13-54822140-3	chr13	54822044	54822244	+	826.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32739.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	3.82703393604108	3.50023816811838	3.68875369779552	3.50691099758889	3.67637649240343	3.26240420973882	3.46321740839814	3.58482957110892	-0.377422686701588	0.46357243804433	0.744892202383526
Merged-chr2-174437080-4	chr2	174436994	174437194	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022325, intron 2 of 5)	intron (NM_022325, intron 2 of 5)	1945.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	4.93501392480974	4.8657957983593	4.7886062430721	4.79069052584564	4.89078978204358	5.17499686606399	4.72695725490535	5.09514183482051	0.271886484440013	0.403919609147105	0.701148490659232
Merged-chr17-74018443-4	chr17	74018338	74018538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053188, intron 4 of 4)	Lx8|LINE|L1	29478.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	7.16786316729597	6.79346361772008	7.03046688228931	7.28448392687632	6.90068499723699	6.87419466494603	6.81231893040134	7.26835940895184	-0.15806644802079	0.469127312846908	0.748095998770725
Merged-chr5-144255998-4	chr5	144255762	144255962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_018772, exon 2 of 3)	exon (NM_018772, exon 2 of 3)	637.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	5.59986626099542	6.00552424541672	6.22130359856706	5.60083319110383	5.86167703534182	5.88708320495814	5.73259192375804	6.02869179755842	0.0137126066783039	0.960801116226767	0.986019634156535
Merged-chr10-39134024-4	chr10	39133932	39134132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028006)	promoter-TSS (NM_028006)	9.0	NM_028006	71924.0	Mm.297956	NM_028006	ENSMUSG00000019845	Tube1	2310061K05Rik|AI551343|Tube	epsilon-tubulin 1	protein-coding	5.68460817086679	5.59846999514332	6.42603149256031	5.72776106715343	5.4549027318534	5.54415818773744	5.73159341373462	5.78101537276118	-0.436752290987386	0.155454681310141	0.441051847934254
Merged-chr1-52817796-4	chr1	52817703	52817903	+	985.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008384)	promoter-TSS (NM_008384)	-115.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	5.62750818016142	5.56939930949726	5.74323568360733	5.52578647925064	4.88151542774288	5.27775939668861	5.33486764985795	5.0953228943445	-0.838336701280069	0.00459908875323736	0.0446479184897275
Merged-chr19-32754893-4	chr19	32754808	32755008	+	969.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2669.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	4.84624549664082	5.09009204591796	4.81077987580931	4.87797880226423	4.87726394420785	4.5599396855611	4.45727096002773	4.94661777988031	-0.362633385476541	0.301331961698559	0.613357765499206
Merged-chr9-41084510-6	chr9	41084465	41084665	+	824.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	-5059.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	4.01732930765747	3.81172643751261	3.68027105519722	3.6301389075029	4.14551007584872	4.49508286753778	4.30535673352311	4.28361792922141	1.39584655623733	0.00101687379103318	0.0136206359751506
Merged-chr9-119925447-4	chr9	119925329	119925529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028976)	TTS (NM_028976)	12129.0	NM_028976	74498.0	Mm.104789	NM_028976	ENSMUSG00000032513	Gorasp1	5430411C10Rik|GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding	5.51401857672353	5.60085932190898	5.90098011463023	5.97505679614788	5.26192177066804	5.22726859615705	5.89112577299833	5.39305250644541	-0.511662118515745	0.0972806304619443	0.341756584351735
Merged-chr12-111738989-4	chr12	111738896	111739096	+	790.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163388, intron 4 of 5)	B3|SINE|B2	-19853.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	3.89924493705486	4.10058114206215	4.04384512012824	3.80306970978649	3.75066439290515	4.07222108677767	4.07002510263791	3.7919399576787	-0.0991430462022535	0.82363683965749	0.932356535727038
Merged-chr1-154118119-4	chr1	154118040	154118240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-83047.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	6.48554645867795	6.38581155309206	6.5361383638408	6.4271903885645	6.57664410004889	6.74352563161624	6.50275151607094	6.39512685146613	0.151865816664174	0.4736232672719	0.751276449851095
Merged-chr7-128393077-4	chr7	128392976	128393176	+	956.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 3 of 4)	intron (NM_026418, intron 3 of 4)	25096.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	4.7651331151782	4.85379087117066	4.69005171610431	4.65812567385892	5.07656264530691	4.69965714425823	4.50324049202324	4.56422197107893	0.0168469073778093	0.962880935876491	0.986716902231301
Merged-chr1-16203280-3	chr1	16203194	16203394	+	785.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97412.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	3.34990955562118	3.6309114790431	3.47467979908828	3.0803029837597	3.89166974838285	4.04715283833093	3.57368689492742	3.47281643887205	1.1962087930315	0.0253050771829151	0.149766253881397
Merged-chr18-80704974-4	chr18	80704875	80705075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	3198.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	6.63961382909994	6.36663441867503	6.07665184064409	6.55536518679093	6.24580586892276	6.20939871941445	6.35745511609972	6.13727874362769	-0.291069683142403	0.220220320489057	0.528003179119194
Merged-chr14-75231276-3	chr14	75231170	75231370	+	793.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001247984)	TTS (NM_001247984)	-11017.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	3.80954114131572	3.67037047150502	4.27321722509228	3.9461854528658	3.79348213560938	4.04044492331726	3.79493947616932	4.41640142379077	0.245954103195374	0.609540288300487	0.831078789022897
Merged-chr5-113635293-4	chr5	113635195	113635395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	8308.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	6.19082290936986	5.97132566690712	6.23103136653095	6.53978155486231	5.93996981624878	6.0818425356235	6.50354321002809	6.42215016083363	-0.0174517352569125	0.947869133447297	0.981348536548879
Merged-chr17-87984654-4	chr17	87984553	87984753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010830, exon 4 of 10)	exon (NM_010830, exon 4 of 10)	9603.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	6.13322135298704	5.9880222321886	6.2314526285817	6.37485536039233	5.9831489677837	6.16082704961952	6.32333889745228	5.86104283131357	-0.170272971975487	0.49404701987861	0.764773251741736
Merged-chr16-21837818-4	chr16	21837721	21837921	+	711.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43474.0	NR_037957	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	3.73999101095914	3.59854950909869	3.63479032217915	3.58069853069454	4.01579067105361	3.63567760079964	3.62071717042893	3.83584861794735	0.490410260472312	0.29536846598391	0.607379595804165
Merged-chr10-59886684-4	chr10	59886581	59886781	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019965, intron 1 of 8)	intron (NM_019965, intron 1 of 8)	7090.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	5.15940218709257	5.57865916101604	5.06255190543743	4.72419950140724	4.93619508822875	5.0198624853628	5.10325878576326	5.1250019343631	-0.215473791759276	0.540152922186792	0.792569467085831
Merged-chr6-72414277-4	chr6	72414191	72414391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019802)	promoter-TSS (NM_019802)	-17.0	NM_019802	56316.0	Mm.19937	NM_019802	ENSMUSG00000053460	Ggcx	-	gamma-glutamyl carboxylase	protein-coding	7.54693460092922	7.53972491964253	7.0153132669073	7.44307589939102	7.66597040632215	7.64296082918877	7.56292451194814	7.35205430043097	0.208091816304591	0.294421558023086	0.606634274221694
Merged-chr4-103340448-4	chr4	103340331	103340531	+	805.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025909, intron 7 of 8)	intron (NM_025909, intron 7 of 8)	26585.0	NM_025909	67013.0	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	3.86257547717176	3.75124801209549	3.36194000946325	3.71009621878045	4.08920059506143	3.72203086103197	3.75104215804921	3.71307192688144	0.458611237526461	0.34995530315614	0.657468765915822
Merged-chr8-46547429-3	chr8	46547311	46547511	+	839.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4658.0	NM_027973	71876.0	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	3.66871115551872	3.48429228503413	3.50711413883705	3.79672263689357	3.51329075622683	3.4352838528537	3.5496771630769	3.8978806419721	-0.0626371829998499	0.901173547529687	0.963342914941175
Merged-chr8-18846301-4	chr8	18846209	18846409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026792)	promoter-TSS (NM_026792)	30.0	NM_026792	52123.0	Mm.24117	NM_026792	ENSMUSG00000031467	Agpat5	1110013A05Rik|D8Ertd319e	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	protein-coding	8.10926182974423	8.34145216078829	8.78888575478331	8.34273386203078	7.99252536345946	8.0692886528681	8.31785649367476	8.26898877330566	-0.319368533006896	0.101830445164447	0.350238669067897
Merged-chr1-64697457-3	chr1	64697359	64697559	+	669.0888669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097644, intron 1 of 9)	intron (NM_001097644, intron 1 of 9)	6114.0	NM_001097644	227210.0	Mm.39706	NM_001097644	ENSMUSG00000070871	Ccnyl1	9630037P07Rik|AW554339	cyclin Y-like 1	protein-coding	3.27805302519128	3.51126386673446	3.27842674018755	3.55343753006856	3.47148968305777	3.45236956478277	3.54556758473881	3.55821830470337	0.277668710439476	0.586231738019919	0.81856236198936
Merged-chr5-134234382-4	chr5	134234302	134234502	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4777.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	5.02526917591993	5.3703118760373	4.96283677780549	4.60829205497828	4.63473179135725	4.5345794742117	4.60944884063795	4.39908802911294	-0.963979067479436	0.0116215988366063	0.0878332749618603
Merged-chr8-117343758-4	chr8	117343682	117343882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-5388.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	6.02973223431137	6.30865663006441	6.11441358126735	6.02275751047709	6.10376532263276	6.07084293842716	6.26958892766661	5.70927142197997	-0.0993336805179242	0.69213357964248	0.87477161166799
Merged-chr15-97248474-3	chr15	97248369	97248569	+	870.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 1 of 5)	intron (NM_172293, intron 1 of 5)	-1182.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	3.64733932609649	3.62822379320416	3.4934240655245	3.5473525990065	3.47875735067834	3.36475494863308	3.36726939810187	3.54515561696262	-0.456542087760755	0.357556926451136	0.663673319804563
Merged-chr2-90509425-4	chr2	90509327	90509527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-30253.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.08964640598754	5.8369876242448	5.55062967747082	5.76683396660259	5.99371832926483	5.91627907611975	5.94006035041599	5.42420692492548	0.034810628291146	0.900822453964813	0.963263598749515
Merged-chr10-44702275-4	chr10	44702177	44702377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-243529.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.82849872575989	7.4068017269916	7.34438041194474	7.48731657916475	7.01330987681057	6.97801169816187	7.09500471949364	7.12583827508961	-0.338387795496666	0.11071038629209	0.367532045421607
Merged-chr10-17613464-4	chr10	17613368	17613568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER63B|DNA|hAT-Blackjack	-109760.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	6.01005416296424	5.80079305522339	5.52074007983743	5.75849577616259	6.08344130010015	5.89035936783998	5.78400366206694	5.6582205687085	0.147235722992903	0.580601645320032	0.815840553973051
Merged-chr11-58330681-4	chr11	58330571	58330771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161338)	promoter-TSS (NM_001161338)	-36.0	NM_001161338	79566.0	Mm.290534	NM_024480	ENSMUSG00000013646	Sh3bp5l	2310074E09Rik|BC003251|mKIAA1720	SH3 binding domain protein 5 like	protein-coding	7.26361552503597	7.18685335696957	7.01893716698562	7.06950479786208	7.49999997498394	7.04619391652631	7.32046640041349	7.53525128788206	0.319373871644478	0.105313510666437	0.357107901708664
Merged-chr12-59132734-4	chr12	59132632	59132832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165253, intron 1 of 22)	intron (NM_001165253, intron 1 of 22)	1279.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	6.10153861297124	6.00235208217086	6.24494243507603	6.56025655932054	6.58019313134978	6.12080678819986	6.11353065864643	6.46826025476248	0.126542761663241	0.629823465111155	0.842451317757486
Merged-chr5-142906794-4	chr5	142906724	142906924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007393)	promoter-TSS (NM_007393)	-70.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	7.84670765532881	8.06638729922794	7.88542761494281	7.61927379501036	8.01786553703486	8.28519568846787	7.99294245863239	7.95170403436595	0.270066040132661	0.137920899685487	0.413089489531381
Merged-chr3-57706267-3	chr3	57706164	57706364	+	709.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-13727.0	NM_001033349	242037.0	Mm.291091	NM_001033349	ENSMUSG00000074591	Ankub1	Gm410	ankrin repeat and ubiquitin domain containing 1	protein-coding	3.69678332649655	3.30990130050975	3.423171750697	3.44838186015425	3.60574320918194	3.76560359489266	3.86275090616767	3.48096350772017	0.671633899849437	0.175216446309401	0.469912833953675
Merged-chr18-36726700-4	chr18	36726597	36726797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009841, exon 1 of 2)	5' UTR (NM_009841, exon 1 of 2)	118.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	7.82311340710184	7.6737374618992	8.01823113095606	8.12608349277658	7.5587071020508	7.43446155705981	7.80870276801788	7.66812449732826	-0.396622289242635	0.0362848313759056	0.189439182436486
Merged-chr13-104094990-3	chr13	104094885	104095085	+	798.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029447, intron 1 of 12)	ORR1E|LTR|ERVL-MaLR	14629.0	NM_029447	75805.0	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	4.20450297661682	4.13659591879154	4.66567148742247	4.3054517912978	3.74876130858148	3.87000931795208	3.79221184229892	3.68373663741658	-1.56098977338264	0.000623544412082485	0.0092119692211746
Merged-chr7-80018821-6	chr7	80018763	80018963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-5951.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	4.80477088914838	5.15818536103294	5.14624575935083	4.55834880579547	5.02159743048462	4.86105142510139	4.92901338299153	5.04983584701667	0.0888021911257126	0.799033047753659	0.922381586635156
Merged-chr4-86576465-3	chr4	86576295	86576495	+	810.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178376, exon 1 of 1)	exon (NM_178376, exon 1 of 1)	722.0	NM_178376	68441.0	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	3.03396038605873	3.17280307424794	3.03432752802774	3.06952883960384	3.13002640587513	2.87251515815772	2.962876019818	3.1478909177334	-0.169049789531313	0.770497460290713	0.910208520553554
Merged-chr13-80960712-4	chr13	80960601	80960801	+	967.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3373.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	5.47564804149917	4.61191278015357	6.08527767876779	6.0784243923109	4.86986074210694	5.21059733598708	5.2133914847417	5.02501608998502	-1.06964906336323	0.00946586875754646	0.0759007629033907
Merged-chr13-97254908-3	chr13	97254814	97255014	+	790.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13809.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	3.55362219560486	3.36915354282418	3.19845691746222	3.28733041908847	3.37357593619196	3.50430826862414	3.31584789193095	3.94885763663073	0.674458974848714	0.211896479634954	0.516740975730402
Merged-chr3-79491842-4	chr3	79491747	79491947	+	956.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 10 of 16)	intron (NM_001162999, intron 10 of 16)	75832.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	6.56157500136409	6.09514288056298	6.86608433397736	7.17680722192964	5.27837315194895	5.55697264224611	6.08838239563009	6.05062347302565	-1.4559261441413	9.18954385638991e-06	0.000255608652658842
Merged-chr9-120577322-4	chr9	120577238	120577438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073359)	promoter-TSS (NR_073359)	7.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	6.94477370408132	7.06362148247614	6.89069651919265	7.05221695860705	7.39832228952057	7.52413550595693	7.4409630646046	7.05720075920622	0.505274172959201	0.00953539258485431	0.0762777825126259
Merged-chr16-33684810-2	chr16	33684710	33684910	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175256, exon 1 of 15)	exon (NM_175256, exon 1 of 15)	344.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	3.26742098847496	3.44391331293859	3.32739398995343	3.42354798738064	3.03865569734013	3.31754902284642	3.47661847680972	3.58758955986461	-0.0174349504662409	0.974672959473526	0.990960275032127
Merged-chr17-73041142-4	chr17	73041066	73041266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-66819.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	5.69197303730299	5.19899704850869	5.59123172104934	6.24012288698678	5.32068129154292	5.44005018478082	5.53635602795383	5.63912203549446	-0.457524841525662	0.170196570660164	0.463203311692493
Merged-chr15-59156481-3	chr15	59156368	59156568	+	976.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	-74442.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	4.8099636713374	4.38486358332788	5.14302526541134	4.85822615240867	4.00667888766174	4.27912833556126	4.34044109737314	5.05724097983463	-0.733853236648433	0.107562438355701	0.361652659410506
Merged-chr15-84923787-3	chr15	84923761	84923961	+	987.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016714, intron 1 of 7)	CpG	433.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	4.46872098325647	4.66039353271517	4.80722552472827	4.40046461832268	4.97230214914012	5.2739314588672	4.82047989347167	5.0093425178202	0.915431672975973	0.00770051930887505	0.0653841421789834
Merged-chr14-33190937-4	chr14	33190864	33191064	+	825.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5898.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	4.0327531250989	3.52070214565662	3.99160896479719	3.68707813169481	3.68048231355482	3.4564136605598	3.74305687659145	3.75650295385863	-0.452104881546131	0.360582040268643	0.665919212407671
Merged-chr9-54578552-3	chr9	54578448	54578648	+	843.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25B|LTR|ERVK	-7963.0	NM_029573	67834.0	Mm.279195	NM_029573	ENSMUSG00000032279	Idh3a	1110003P10Rik|1500012E04Rik|AA407078|AI316514	isocitrate dehydrogenase 3 (NAD+) alpha	protein-coding	4.88811585561395	4.69353359471028	4.60623706958166	4.97166710926463	4.09446770068418	4.319177535119	4.22545591949155	4.82069728838945	-0.924388022245178	0.0218134971627733	0.135698559215962
Merged-chr9-50659598-4	chr9	50659491	50659691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145614, exon 1 of 14)	5' UTR (NM_145614, exon 1 of 14)	189.0	NM_145614	235339.0	Mm.285076	NM_145614	ENSMUSG00000000168	Dlat	6332404G05Rik|DLTA|PDC-E2	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	protein-coding	6.49521634446311	6.439406149661	6.05428880997022	6.18064020702611	6.51265999702263	6.62214632312176	6.44688746832947	6.3549297286421	0.280500285794681	0.219705591760954	0.527345281266327
Merged-chr2-129800550-4	chr2	129800434	129800634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183262)	promoter-TSS (NM_183262)	17.0	NM_001038635	67333.0	Mm.389329	NM_183262	ENSMUSG00000037885	Stk35	1700054C12Rik|CLIK1|Stk35l1	serine/threonine kinase 35	protein-coding	6.98994093189846	7.64728449602645	6.71412485804532	6.33104920266368	7.12723984259796	7.11750695845856	6.81148870265954	6.64584290386785	-0.0965347298579641	0.749406159341557	0.901305797539373
Merged-chr13-108214413-4	chr13	108214333	108214533	+	747.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029001)	promoter-TSS (NM_029001)	29.0	NM_029001	74559.0	Mm.286127	NM_029001	ENSMUSG00000021696	Elovl7	9130013K24Rik|AI840082	ELOVL family member 7, elongation of long chain fatty acids (yeast)	protein-coding	3.4578833765087	3.42032027914682	3.28885283042753	3.28879638760743	3.45252664551033	3.40103344792243	3.444471119967	3.34612680389564	0.18449798732035	0.715114737731475	0.886010584897636
Merged-chr3-41363598-3	chr3	41363570	41363770	+	755.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	129529.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	2.88290947730203	2.61515368684085	2.88334516625351	3.27904648864214	2.34185331629931	2.36955359129615	2.42360084044587	2.34945804780789	-3.95796380540612	0.000134609018662891	0.00260503951587979
Merged-chr9-120941094-3	chr9	120940994	120941194	+	644.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007614, intron 1 of 14)	L2|LINE|L2	7516.0	NM_001165902	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	3.34934093438336	3.35741173994338	3.23839220454566	3.28738579283963	3.10626205523603	3.29028947103652	2.90265906037855	3.40006381327652	-0.463539146631365	0.41473589281731	0.709166793543694
Merged-chr7-63930280-4	chr7	63930182	63930382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	ORR1D2|LTR|ERVL-MaLR	8633.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	5.90014437115153	5.83247841606661	5.60304949735409	5.71676274342484	5.71459356151275	5.86048233792677	6.19789105428251	5.59911757747073	0.153050981248812	0.572172948518031	0.811128321794733
Merged-chr18-62054195-1	chr18	62054095	62054295	+	666.666687	f0_balb.idr	Intergenic	Intergenic	101120.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	2.9913236140513	2.96579302642036	2.99176473326899	3.01683938124458	2.40185409787881	2.64834397903211	2.53735588090496	2.68655034407886	-2.3805440430666	0.00153452363280261	0.0190222670949594
Merged-chr3-89801644-4	chr3	89801525	89801725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28016.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	6.78128102533245	7.20436478183033	6.56981651965246	6.4111461310186	6.7690365932799	6.66198385531741	6.89229631552836	6.40678613571803	-0.106947731435627	0.67633067036305	0.867097153109958
Merged-chr4-48076888-4	chr4	48076766	48076966	+	932.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015743, intron 7 of 7)	intron (NM_015743, intron 7 of 7)	25620.0	NM_001307989	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	4.14642017831648	4.46651355961887	4.51974315596795	4.52485964670142	4.59681160869476	4.56598025574435	4.68480200914506	4.47575854566594	0.338125301648822	0.358418206229615	0.664388382541675
Merged-chr11-82081099-2	chr11	82080999	82081199	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20746.0	NM_011331	20293.0	Mm.867	NM_011331	ENSMUSG00000035352	Ccl12	MCP-5|Scya12	chemokine (C-C motif) ligand 12	protein-coding	3.36954394296752	3.82977536394745	3.64078628401377	3.29405059523265	3.52742108704138	3.60018599447667	3.23536084399843	3.48320921288152	-0.26199758239654	0.627696520697805	0.841282116569049
Merged-chr9-72468944-3	chr9	72468773	72468973	+	752.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009359, intron 10 of 11)	intron (NM_009359, intron 10 of 11)	23086.0	NM_009359	21778.0	Mm.14485	NM_009359	ENSMUSG00000090626	Tex9	Gm19407|tsec-1	testis expressed gene 9	protein-coding	2.74577872881917	2.47005316349862	2.87386912268421	2.43007013518754	2.68821434123359	3.04632555028964	2.92115007867676	2.98849139125909	1.32345482552692	0.0504118949284744	0.232928806823361
Merged-chr1-161998943-4	chr1	161998860	161999060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038619, intron 20 of 20)	intron (NM_001038619, intron 20 of 20)	-6009.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	6.35425547198406	6.03743180137226	6.32016466746762	6.31967795596089	6.3563598523949	6.10284755722552	6.03263142455442	6.27943727166936	-0.0869178868536315	0.711045012364069	0.884240356833917
Merged-chr2-112448698-3	chr2	112448595	112448795	+	867.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6330.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	4.0805566929307	3.87384752497274	3.94361022949645	3.88482851709319	3.83181088763251	3.79347136839531	4.06300207678764	3.9888384720148	-0.0580098146106704	0.893375101377482	0.960146557262646
Merged-chr9-110459330-4	chr9	110459209	110459409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360306, intron 1 of 9)	MER58B|DNA|hAT-Charlie	17385.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	6.50087892900846	6.50190750590754	6.92750328615012	7.10514069189169	6.53271039972764	6.38881407051391	6.74804438581631	6.99503489313109	-0.160803112157209	0.527709651823926	0.784532463911927
Merged-chr12-91676111-4	chr12	91676009	91676209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-85622.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	5.4620882255508	5.80589198592202	5.72716224851836	5.78863724162947	5.60617000243516	5.51735283350307	5.52040525676151	5.42956293372182	-0.31766280320436	0.235179656251877	0.545165529614809
Merged-chr2-16228302-3	chr2	16228192	16228392	+	842.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 37 of 38)	intron (NM_001310455, intron 37 of 38)	-128012.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	4.00508251970621	4.02013411972003	4.14842877427881	4.55823311944694	3.95866000127	3.90763575657227	4.21619900257396	4.00333992868057	-0.512227166914693	0.252929597215826	0.564182396569443
Merged-chr14-76051399-3	chr14	76051296	76051496	+	856.638916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40531.0	NM_026816	68705.0	Mm.20415	NM_026816	ENSMUSG00000067995	Gtf2f2	1110031C13Rik|AI326315	general transcription factor IIF, polypeptide 2	protein-coding	3.80071437283472	3.50441754658562	3.80127298106199	3.23375550275202	3.82666075371199	3.97631584569023	4.02020542579947	4.19894894455904	1.2326803367962	0.0122349786111367	0.0911675434297041
Merged-chr17-79175532-2	chr17	79175425	79175625	+	854.5833130000001	f0_c57.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	123619.0	NM_001316729	70536.0	Mm.293870	NM_027455	ENSMUSG00000024084	Qpct	5730422A13Rik	glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	protein-coding	2.97551629047754	2.96298369523677	2.9758133204965	2.73132488846214	3.93739028439443	3.62471709618939	3.85888059083434	3.83458675336382	3.54750481176196	4.2160207848142e-10	2.89384902065853e-08
Merged-chr3-89764406-4	chr3	89764267	89764467	+	917.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009602, exon 1 of 6)	exon (NM_009602, exon 1 of 6)	265.0	NM_009602	11444.0	Mm.35088	NM_009602	ENSMUSG00000027950	Chrnb2	Acrb-2|Acrb2|C030030P04Rik|[b]2-nAchR	cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal)	protein-coding	3.75736302012626	4.19115642828509	3.75786793007452	3.86875874427186	3.80357764237546	3.8205357966976	4.03293342954407	3.86102643039065	-0.0780608270218024	0.863081449405381	0.94847059222142
Merged-chr17-33916017-4	chr17	33915895	33916095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020625)	promoter-TSS (NM_020625)	-181.0	NM_020625	81630.0	Mm.482096	NM_020625	ENSMUSG00000051390	Zbtb22	1110008J20Rik|AI265210|AI415166|Bing1|Zfp297	zinc finger and BTB domain containing 22	protein-coding	8.81133807038099	8.95913432924078	8.6888831986321	8.45506645298715	8.61244887781905	8.93865857190731	8.63186956815774	8.43451142530084	-0.0902281670381508	0.624032935804012	0.839263870337153
Merged-chr10-59222684-4	chr10	59222587	59222787	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024911)	promoter-TSS (NM_001024911)	765.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	4.88455760537894	5.63590979083551	5.81805362049196	4.71658239586314	5.73755147785214	5.75874666676178	5.72267620706595	5.29363469663013	0.515053025727786	0.170940195604713	0.464071117837823
Merged-chr2-118373181-3	chr2	118373064	118373264	+	841.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_201367, exon 1 of 3)	exon (NM_201367, exon 1 of 3)	255.0	NM_201367	381413.0	Mm.70979	NM_201367	ENSMUSG00000040133	Gpr176	Gm1012	G protein-coupled receptor 176	protein-coding	3.19336889194658	3.27893858737813	3.81219139886572	3.21071090918207	3.68515201791875	3.62910495559045	3.65445370632402	3.80971900351707	0.988541866389901	0.0613873631276265	0.262148495324054
Merged-chr1-56089691-3	chr1	56089589	56089789	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70711.0	NR_126076	69356.0	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA	5.36157434392354	5.49005820849305	5.85460791145897	6.05768824108882	3.62268786695165	4.11763149747579	4.02830263292501	4.04296910733826	-4.39246889245186	3.59944304455257e-18	9.31653659884389e-16
Merged-chr4-150001474-1	chr4	150001374	150001574	+	733.0	f0_balb.idr	intron (NM_173371, intron 1 of 4)	intron (NM_173371, intron 1 of 4)	1762.0	NM_001291004	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	4.14379681979835	3.73313619423775	3.684539512603	3.80357988199318	3.52728003615326	3.68648343143607	3.82448784370993	3.83856170235873	-0.385744379843079	0.417608911837649	0.711379316398038
Merged-chr13-51316471-3	chr13	51316369	51316569	+	956.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-92149.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	3.91326076557695	3.15065073381536	3.24559083249703	3.66659376162357	3.44575112539592	3.54900066112118	3.58250598371923	3.48846954489215	-0.0569695906864329	0.919005845036633	0.970259378570766
Merged-chr8-67506575-4	chr8	67506479	67506679	+	899.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER3D-int|LTR|ERVK	11631.0	NM_010874	17961.0	Mm.4695	NM_010874	ENSMUSG00000051147	Nat2	AV377607	N-acetyltransferase 2 (arylamine N-acetyltransferase)	protein-coding	3.94933016566167	3.9516316232661	4.46359632432349	4.44105694872716	4.12978825438645	4.07436355951851	4.58614155779575	4.57090529528394	0.300391365660282	0.501727516538022	0.769348331159891
Merged-chr11-120824456-8	chr11	120824339	120824539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007988, exon 1 of 43)	5' UTR (NM_007988, exon 1 of 43)	108.0	NM_007988	14104.0	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	6.14418395160547	6.04301436878471	6.10548565595948	5.92717359605254	6.1503360253317	5.93672892474472	6.01250488447336	6.12115830084023	0.0278040816391238	0.905908976928409	0.965064837126805
Merged-chr7-99978217-2	chr7	99978117	99978317	+	953.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 1 of 5)	PB1D10|SINE|Alu	2241.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	3.70132374278559	3.129681440951	3.09157316111582	2.88073941974271	3.16126659498581	2.86086404510938	2.66552142875178	2.89608435036901	-1.30931608208375	0.0653073467406857	0.272048553462047
Merged-chr4-137837990-4	chr4	137837868	137838068	+	915.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24269.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	6.33654494998787	5.42986890109148	6.12242999344832	6.08320671427656	4.41309379851768	4.68660359413663	4.81932700853862	5.1589867625644	-2.26076185160045	4.93141213891208e-10	3.3461676323701e-08
Merged-chr2-78048597-3	chr2	78048507	78048707	+	900.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2570.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	3.96966196013202	3.9686666472007	4.14502128953229	4.02590288386641	3.72749276391627	3.64465968406825	3.80595392618819	3.92017700556524	-0.718231802374275	0.105520136969759	0.357589879516783
Merged-chr9-107313412-3	chr9	107313318	107313518	+	966.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16759.0	NM_001317354	12700.0	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	3.74972797468985	3.60910399982717	3.35710666959899	3.34726225208046	4.31256897588566	4.03747805391206	4.352065055807	4.29877877128066	2.11854422362511	3.1005442813089e-06	9.73076020279039e-05
Merged-chr10-23979569-4	chr10	23979474	23979674	+	736.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6072.0	NM_001010828	215855.0	Mm.377237	NM_001010828	ENSMUSG00000045111	Taar6	Gm228|taR-6	trace amine-associated receptor 6	protein-coding	3.78717378990823	3.89912418911594	4.11122101342497	3.95150721835109	3.72636476787112	3.6750234329827	3.77253412030379	3.88656852935011	-0.510305149125291	0.25579605457139	0.567388281053066
Merged-chr6-15753414-2	chr6	15753314	15753514	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	32753.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	3.26430577942196	3.09668359579013	3.42263839876581	3.00832038563388	3.40297551482004	2.9851375652259	3.4076719465306	3.0175475974639	0.0907007409220031	0.878440750174712	0.954545606389742
Merged-chr11-22990922-2	chr11	22990822	22991022	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009837, intron 1 of 13)	CpG	329.0	NM_009837	12464.0	Mm.296985	NM_009837	ENSMUSG00000007739	Cct4	2610204B21Rik|A45|C78323|Cctd	chaperonin containing Tcp1, subunit 4 (delta)	protein-coding	5.70659115160459	5.50714957365266	6.19513151158847	5.55816017727937	5.45948916816611	5.69724904906399	5.52105426349758	5.75224475463699	-0.253407979243975	0.391326468745048	0.691068990195101
Merged-chr11-3178115-2	chr11	3178008	3178208	+	984.916626	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 5 of 32)	intron (NM_030207, intron 5 of 32)	15355.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	4.49599186125225	4.24407402474529	4.93326960880679	4.83985069771572	3.02058049758473	3.31949462936419	3.26574529361447	3.27459804472763	-7.44720086539103	6.13254454805949e-12	5.77392048130061e-10
Merged-chr8-115428214-4	chr8	115428108	115428308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	278686.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	6.46786763900717	6.61450209518913	6.66628208054171	6.90955613978156	6.90587034290957	6.53426239733917	6.98672568693381	6.63062547026504	0.136079138935062	0.54929836231598	0.797945021965532
Merged-chr1-157141230-4	chr1	157141142	157141342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177644, intron 17 of 17)	intron (NM_177644, intron 17 of 17)	-32562.0	NM_001305063	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	6.34315204509834	6.16350479340096	6.42542817959426	6.44868660465941	5.82307347781949	5.90834922712638	5.52667316438356	5.77850947588424	-0.918779702575551	0.000182968280269281	0.0033748378391519
Merged-chr4-42999879-4	chr4	42999765	42999965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009503, intron 1 of 16)	CpG	642.0	NM_009503	269523.0	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	5.90301210396809	6.30844073146273	6.88243897979134	5.98651651406298	6.25023147760215	6.41498085226466	6.06174471712401	6.67485850105528	0.0672170753777419	0.823076398373743	0.932185203682946
Merged-chr14-77343921-4	chr14	77343816	77344016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253759, intron 3 of 19)	intron (NM_001253759, intron 3 of 19)	162952.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	7.34868838191274	7.61364578454199	7.43165396270315	7.83987782749933	7.79881898503455	7.39434405461679	7.53460532133763	7.54883303055889	-0.00134996019035264	0.994629900399281	0.998093408906001
Merged-chr11-107786738-3	chr11	107786633	107786833	+	814.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019431, intron 1 of 3)	intron (NM_019431, intron 1 of 3)	7961.0	NM_019431	54377.0	Mm.103724	NM_019431	ENSMUSG00000020723	Cacng4	AI413107|AW491861	calcium channel, voltage-dependent, gamma subunit 4	protein-coding	3.42871825359087	3.63713530199158	3.74471854291532	3.56426762133771	3.70865607067617	3.41585130587201	3.58250699399709	3.54129487481166	-0.0748813484513883	0.878747284900612	0.954708519232108
Merged-chr8-126563872-4	chr8	126563776	126563976	+	917.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29560.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.0444060019974	5.41166548774724	4.67394702283027	4.68905512258597	5.09048566910773	4.933926890182	4.6525894198659	4.90604315894401	-0.149683548515186	0.686786622293513	0.871908413750359
Merged-chr6-146619680-3	chr6	146619578	146619778	+	997.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026281, intron 5 of 11)	intron (NM_026281, intron 5 of 11)	14914.0	NM_026281	67623.0	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	4.14375174010267	4.49788968918564	4.94205517268642	4.87662707845971	3.26458681681992	3.39638671936211	3.49403471206709	3.50444493725445	-4.25703918596111	1.71770544880822e-10	1.26436976360621e-08
Merged-chr1-80371656-3	chr1	80371563	80371763	+	911.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-30973.0	NM_016716	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	3.27699706034191	3.52838260846553	3.49612824505101	3.56821964964323	3.2646031640136	3.12272043430505	3.43131709932307	3.27580397529878	-0.722852788706263	0.178150756276735	0.473861887833482
Merged-chr18-35119746-4	chr18	35119639	35119839	+	899.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009818, intron 1 of 17)	intron (NM_009818, intron 1 of 17)	827.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	4.16338188451078	4.48323165973469	4.21683579482907	4.79358979884662	4.59427160148623	4.44575376046492	4.70281534425221	4.82294734412129	0.405227766296671	0.319798539714254	0.631656381031906
Merged-chr2-35623199-3	chr2	35623103	35623303	+	964.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290641, intron 1 of 15)	intron (NM_001290641, intron 1 of 15)	1222.0	NM_001114124	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	4.05408056557711	4.16393707742744	3.86724294845346	4.09105357177625	3.80735673694036	3.70386415740565	3.69231185688404	3.76005828188985	-0.883980229150498	0.0484462178845954	0.227194185189591
Merged-chr4-89351697-4	chr4	89351596	89351796	+	970.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-40664.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	4.43118757197313	5.00390972327029	4.83929596077194	4.69375085932856	4.8218718720561	4.97535459807507	4.45910586422643	4.60755324756007	-0.0545278250368416	0.882339404328935	0.955717753610026
Merged-chr7-113208281-4	chr7	113208158	113208358	+	830.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357070, intron 1 of 19)	CpG	793.0	NM_007489	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	4.3308398667384	4.02130106135701	4.85005797629409	4.06552277173392	4.16974031762071	4.50760133270283	4.52023821822936	4.71917034476729	0.319575514306734	0.469486241766116	0.748378822236993
Merged-chr4-83266572-4	chr4	83266486	83266686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 3 of 19)	B4|SINE|B4	57603.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	6.22733089036099	6.08158567617698	6.00784076850208	6.18032801709866	6.17455243185117	5.97075714825503	5.9553529736095	6.00356995436859	-0.145363909626276	0.535455498367871	0.789765706629649
Merged-chr16-18836649-4	chr16	18836568	18836768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033164)	promoter-TSS (NM_001033164)	88.0	NM_001033164	72307.0	Mm.36907	NM_001033164	ENSMUSG00000071632	2510002D24Rik	2410043I01Rik|AA163535|AA409624|DXMgi27	RIKEN cDNA 2510002D24 gene	protein-coding	6.04781368597673	5.47481060757985	6.00990415660431	5.81746541806824	5.3817072593217	5.82087689743548	5.10702613212625	6.00557287055724	-0.382059434149396	0.238355831555516	0.54879281042504
Merged-chr8-26023910-4	chr8	26023838	26024038	+	927.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_207659, exon 22 of 22)	3' UTR (NM_207659, exon 22 of 22)	-8337.0	NM_008033	14272.0	Mm.3496	NM_008033	ENSMUSG00000015994	Fnta	FTA	farnesyltransferase, CAAX box, alpha	protein-coding	5.49422367659583	5.2994397071244	5.56620436948185	5.73370889723173	4.59644226318247	4.60450872461258	4.59820591728448	4.83641915231376	-1.72167688977349	1.57706206504999e-07	6.49616323658527e-06
Merged-chr16-27387887-4	chr16	27387775	27387975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1081.0	NM_001025615	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	5.1638512760151	5.3775311095164	5.42565791491787	5.60178669132611	5.49801417609553	5.86363599331533	5.77559480767174	5.47954089588192	0.409907602756272	0.156985466160559	0.443274694376484
Merged-chr11-48817282-6	chr11	48817151	48817351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145377, exon 1 of 6)	5' UTR (NM_145377, exon 1 of 6)	140.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	7.66673845898557	7.71094698362495	8.07539967797005	7.45593970235662	7.28276665598132	7.7325830126776	7.41401111059366	7.78150810528173	-0.231062838001464	0.283528006453605	0.595668240004757
Merged-chr2-35174291-3	chr2	35174184	35174384	+	967.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012018, intron 39 of 43)	MTD|LTR|ERVL-MaLR	26836.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	4.28316943012731	4.2403967876648	4.19923729516137	4.17520794867327	3.81942312891038	3.78643905620032	4.37986579056759	4.00869913298069	-0.533959634626644	0.222380286837999	0.530420428819849
Merged-chr10-111721201-4	chr10	111721092	111721292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126919.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	6.4979457287145	6.05571795829449	6.71303123717564	6.83155859572389	6.06105702600395	6.15028774388869	6.8237467885765	6.81575945970628	-0.0783143010753405	0.790956129963854	0.918930451102165
Merged-chr9-15010469-4	chr9	15010375	15010575	+	972.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019482, intron 2 of 4)	intron (NM_019482, intron 2 of 4)	35003.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	5.31953446243574	5.12760942630446	5.37725968390214	5.76225611126674	4.99769593548791	5.13111394863105	4.85003392298584	5.28737574729454	-0.669274376219301	0.0416557381060928	0.206691644296975
Merged-chr7-143044696-2	chr7	143044596	143044796	+	862.6666869999999	f0_balb.idr|f1_balb.idr	intron (NR_110355, intron 1 of 4)	MT2A|LTR|ERVL	-8054.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	4.25908295597793	4.61881922284527	4.21865406414275	4.19105927282666	3.38191850535321	3.83712178568131	3.63833781366203	3.88440376852461	-1.84103948924729	0.000173457747067315	0.0032329272004463
Merged-chr3-81036824-4	chr3	81036728	81036928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019971, exon 1 of 6)	5' UTR (NM_019971, exon 1 of 6)	412.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	5.42899081883881	5.91187255884213	6.30629385817768	5.942670137859	5.41143234525962	5.57771714483752	5.63192828358455	5.75790503984867	-0.558476236039482	0.0581406340158711	0.253298579300752
Merged-chr2-34610591-4	chr2	34610365	34610565	+	917.880981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290625, intron 10 of 11)	B4A|SINE|B4	144767.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	3.11309725593267	3.05628692832864	3.0541473302674	3.01295548506983	3.26051223915475	3.22368562199817	2.91779531030731	2.99057325697789	0.220493990065405	0.700390440763231	0.879134695594654
Merged-chr18-46524436-4	chr18	46524376	46524576	+	936.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_173423, exon 2 of 3)	exon (NM_173423, exon 2 of 3)	1495.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	4.2471109684761	4.1538662747765	4.37549700179824	4.26389246636633	4.19767356686601	4.06972743851043	4.31478388405346	4.45059766361083	0.00973003835046061	0.980244128380251	0.99281244474172
Merged-chr10-10474436-4	chr10	10474349	10474549	+	858.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-2135.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	4.3873459654092	4.32390175271686	4.43218520437966	4.38072686655248	5.00799888784524	4.56256432482522	4.32330755312443	4.51329858646342	0.587718620779231	0.128109027227684	0.398334459594589
Merged-chr8-13661042-1	chr8	13660942	13661142	+	1000.0	f0_balb.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	16545.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	3.56355217348066	3.1410121049139	3.36565454668823	3.70818627609623	3.04671260446372	3.17560933792739	2.83940074574874	3.25173536883421	-1.47027121372197	0.0177565066157747	0.118109558396806
Merged-chr18-30087456-3	chr18	30087347	30087547	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-185418.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	5.93841010539651	5.69530944564753	6.06343017102691	6.40582790555031	4.13349869794061	4.44903551866609	4.34607618349294	4.36294729254301	-3.57457781847013	3.92471893065638e-20	1.34955347229561e-17
Merged-chr5-90778548-3	chr5	90778449	90778649	+	645.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6114.0	NM_019932	56744.0	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	3.39230188524572	3.35659765268874	3.5431430474132	3.18199421677851	3.36387156765955	3.06260277017352	3.26939186747565	3.22061829480121	-0.464046782579958	0.401913263141222	0.699456825357679
Merged-chr17-56005539-2	chr17	56005439	56005639	+	862.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102313)	promoter-TSS (NR_102313)	67.0	NR_102313	106766.0	Mm.204991	NM_145934	ENSMUSG00000038781	Stap2	AW049765|STAP-2	signal transducing adaptor family member 2	protein-coding	2.7622358037946	2.89505166054572	2.76261050436152	2.57984402797868	2.43133431565823	2.67697788978426	2.56368113679447	2.42634157632885	-1.20970704118865	0.0875503205525788	0.322637549397463
Merged-chr11-58104519-4	chr11	58104414	58104614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356477, intron 1 of 6)	CpG	285.0	NM_001356477	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	6.81856464005113	6.65823130770688	6.51854484547104	6.67842016701684	5.96009065245491	6.40570831783491	6.09025014096273	6.49756162937529	-0.631864045809103	0.00744058438533197	0.06366260502904
Merged-chr13-49653416-3	chr13	49653308	49653508	+	853.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025495)	promoter-TSS (NM_025495)	330.0	NR_073167	70930.0	Mm.258915	NM_001081350	ENSMUSG00000021392	Nol8	4921532D18Rik|5730412B09Rik	nucleolar protein 8	protein-coding	3.97139355540598	3.54357013271853	3.78244155811839	3.65293614410731	3.61453683591483	3.79498830476073	3.95399344546778	3.83026207637771	0.178241998727013	0.703734162172819	0.880846429903092
Merged-chr9-59734021-4	chr9	59733910	59734110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001172071)	TTS (NM_001172071)	16639.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	5.60615865634011	5.82741718556202	5.58053644436493	5.81589478000309	5.70456166818736	5.52268050516277	5.31878795875431	5.57661810581111	-0.296766656513812	0.275781801723981	0.587720744458421
Merged-chr3-107084724-4	chr3	107084609	107084809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16858.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	5.38540304971078	5.96284217281442	5.45085846152756	5.52821387122704	6.01518342963036	6.02783352000206	5.95338442711331	6.04041321007161	0.65674081747081	0.0139559638731517	0.0997761704024776
Merged-chr5-113873120-4	chr5	113873001	113873201	+	949.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 2 of 10)	intron (NM_011779, intron 2 of 10)	35605.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	4.62954559967116	4.32143771793611	4.4682421079054	4.79390459840231	4.3774958129539	4.59882258672321	4.53089135256382	4.70101885695975	-0.0658804859929533	0.861029579427779	0.947515986982142
Merged-chr16-32003186-4	chr16	32003078	32003278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177103, exon 1 of 10)	5' UTR (NM_177103, exon 1 of 10)	109.0	NM_001357087	320213.0	Mm.152890	NM_023801	ENSMUSG00000022772	Senp5	6230429P13Rik|A730063F07Rik|AI851888|BB189556|SMT3IP3	SUMO/sentrin specific peptidase 5	protein-coding	7.19325285016951	7.60092265787334	6.8298835399518	7.08853489777609	7.26240046551521	7.40503623473121	7.27657776255485	7.47149936574666	0.195421265697975	0.371660045664636	0.675648274485467
Merged-chr17-10312195-3	chr17	10312085	10312285	+	660.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021881, intron 1 of 6)	intron (NM_021881, intron 1 of 6)	7176.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	3.06698375194818	3.30559938913806	3.43262226322155	3.33124595220866	3.48196446686807	3.31189584020423	3.30947033979114	3.58036680672085	0.47177168271565	0.373914020916776	0.677325446501635
Merged-chr10-80149536-4	chr10	80149419	80149619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305799)	promoter-TSS (NM_001305799)	-163.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	8.16336201952576	8.29563577625535	8.31369005096665	8.2188788984671	8.51127796710198	8.53564139209296	8.67016095812524	8.54770958195223	0.402677954518889	0.00655177807490511	0.0579459507447405
Merged-chr7-73568007-2	chr7	73567907	73568107	+	960.9166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9612.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	3.11430398295927	3.09505549065269	2.8650515432597	2.57523492492838	3.36213571810086	3.0423073584707	2.98494534018948	2.99427187207584	0.757719892662355	0.241735271444959	0.552255337817522
Merged-chr6-134115787-4	chr6	134115692	134115892	+	988.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	80092.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	5.39253232981453	5.30654906365115	5.15558001233484	5.2481178847794	5.90171654122603	5.84616554189504	5.92974180848172	5.93623448267278	1.06011525730565	3.93620393914949e-05	0.000918908036027293
Merged-chr13-58115425-4	chr13	58115330	58115530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1783.0	NM_001362415	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	6.91872942517781	6.34340231563454	6.54605252420338	6.70539311125764	6.73697539209393	6.67200848396095	6.84717025604884	6.74210100961708	0.150432653961556	0.49235835702415	0.763420369769136
Merged-chr1-87326875-4	chr1	87326787	87326987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110212)	promoter-TSS (NM_001110212)	-111.0	NM_146112	227331.0	Mm.23065	NM_146112	ENSMUSG00000048000	Gigyf2	2610016F01Rik|A830080H02Rik|AI852361|AW259676|BC006835|Tnrc15|mKIAA0642	GRB10 interacting GYF protein 2	protein-coding	7.91001675253257	8.0040162258437	7.75097416547809	7.57844014389635	8.12140374360637	8.12416433639632	8.08320930906745	7.73753892756334	0.276713377011596	0.13903508530421	0.414593226669937
Merged-chr19-10294746-6	chr19	10294654	10294854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	10123.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	5.74621505286589	5.87448822980685	5.72314047524709	5.65111184712852	5.34846238442359	5.53785245423239	5.51253781108524	5.83501566929825	-0.310537933245905	0.254715931549468	0.566151176984747
Merged-chr4-88433568-4	chr4	88433473	88433673	+	966.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025760, intron 3 of 6)	intron (NM_025760, intron 3 of 6)	5353.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	4.65200735646989	5.00663847928586	5.12276720817113	5.09177405877375	5.27383535002669	5.32871594089025	5.30730308947561	5.35780613812001	0.601475634355761	0.0506688297251144	0.23339651366127
Merged-chr11-97101935-2	chr11	97101835	97102035	+	770.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019507, intron 2 of 5)	intron (NM_019507, intron 2 of 5)	13396.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	3.14321968385282	3.13296625477882	3.08425581289161	2.97162818503293	3.20660624476506	3.13092768069171	3.18785153895195	3.08273646167804	0.311301676622576	0.572382852761305	0.811251013052168
Merged-chr18-84085270-3	chr18	84085177	84085377	+	939.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081300, intron 1 of 1)	GC_rich|Low_complexity|Low_complexity	1285.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	3.36768702059153	3.31039953839446	3.73295069589719	3.76673482894354	3.57919201873412	3.21269308221955	3.35623579746396	3.6368176486482	-0.349681228310796	0.524155512927345	0.782780102695134
Merged-chr6-37316996-4	chr6	37316876	37317076	+	738.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17000.0	NM_001347104	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	3.77939900362615	3.38851754685867	3.92030312682318	3.83424977806887	3.36499590617491	3.42465632551347	3.94538546471227	3.87279820172563	-0.212328465934647	0.690465234294079	0.873950421520214
Merged-chr16-58482796-4	chr16	58482660	58482860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 6 of 10)	MLT1J|LTR|ERVL-MaLR	40666.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	5.7528757168894	5.7199405003371	6.19537205104339	6.107874176756	5.73031372781197	5.58955099740812	5.93190520581726	5.74980952556609	-0.341697997157942	0.202495854433091	0.50494183017091
Merged-chr12-3892123-4	chr12	3892000	3892200	+	910.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 1 of 17)	intron (NM_153743, intron 1 of 17)	356.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	3.97937442592758	4.11980480371248	4.21760644020351	4.23351856217458	4.32216699677777	4.04863476480984	3.91132703706794	4.29873279997808	0.0420826054804324	0.919862195231391	0.970406583631903
Merged-chr15-75894428-4	chr15	75894347	75894547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172607)	promoter-TSS (NM_172607)	34.0	NM_172607	223646.0	Mm.288368	NM_172607	ENSMUSG00000022574	Naprt	9130210N20Rik|Naprt1	nicotinate phosphoribosyltransferase	protein-coding	5.25253028354978	5.31189701986381	5.00296276951728	4.97764508849884	5.1707131028834	4.82692237279537	4.83358828127512	4.92847253623015	-0.341880197681619	0.295825360950543	0.607719593315749
Merged-chr5-63906716-4	chr5	63906601	63906801	+	912.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62196.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	4.38810778507594	4.360796938622	4.43305678218355	4.4135753615534	4.41350602170849	4.76712533297695	4.8761742910221	4.29286823260755	0.458534601451414	0.227911821317359	0.536672473519528
Merged-chr9-58979253-3	chr9	58979155	58979355	+	851.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008684, intron 4 of 28)	intron (NM_008684, intron 4 of 28)	57186.0	NM_001042752	18007.0	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	3.27354756262332	3.05306722094177	2.90468470604019	3.13524701726232	3.06929485099492	3.38730439815063	3.20661392526092	3.10075716545259	0.358755321281066	0.528949819469341	0.785359737535491
Merged-chr17-6781329-5	chr17	6781122	6781322	+	854.896667	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	1558.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	4.3506499292784	4.19661954927508	3.78264065583379	4.30384753700117	4.05655781699447	3.90307190404819	3.98471047058195	4.18577390864158	-0.378794915098925	0.386388942934544	0.687552275421561
Merged-chr5-96856769-4	chr5	96856666	96856866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63381.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	5.87672050502958	5.53778744605337	5.69645923468641	6.00131517665594	5.24402908968532	5.37519329054911	5.66748760796295	5.32792819673421	-0.67038414843076	0.0196784316116419	0.126596496977365
Merged-chr6-97483478-1	chr6	97483378	97483578	+	661.0	f1_balb.idr	intron (NM_145148, intron 2 of 23)	B4A|SINE|B4	4342.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	2.52395628121237	2.44196676586666	2.65217419438819	2.10400765869983	2.40175425799992	2.63229861609383	2.64134871203952	2.58838382015834	0.673034067873404	0.374592393604672	0.677891254741963
Merged-chr8-104565069-4	chr8	104564962	104565162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23753.0	NM_001301165	12354.0	Mm.129265	NM_053070	ENSMUSG00000031883	Car7	AV343731|Ca7	carbonic anhydrase 7	protein-coding	6.48874526048184	6.77870582991487	6.32201611767103	6.48545142222524	6.7895489532787	6.61408979191698	7.09617921841023	6.82049319359736	0.444852738725188	0.0463837250519903	0.221342663279406
Merged-chr12-3238016-5	chr12	3237941	3238141	+	806.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015551, exon 4 of 7)	non-coding (NR_015551, exon 4 of 7)	2250.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	3.65640473135406	3.27670978497967	3.33413311995492	3.21959405201484	3.67500469343373	3.56675431911332	3.32223460768243	3.55602765195888	0.564959618444736	0.278505906462783	0.59067882113508
Merged-chr13-34078878-6	chr13	34078870	34079070	+	872.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009450)	promoter-TSS (NM_009450)	-962.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	4.05403135342435	4.25110870308737	3.79682841312855	4.08475133877822	3.91556329178533	4.12985662626263	3.99007646543483	4.0046464650822	-0.14451618950001	0.735707822602802	0.895629391634899
Merged-chr14-7994285-4	chr14	7994150	7994350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007870)	promoter-TSS (NM_007870)	-68.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	5.19862058963163	5.0757397243473	5.45889230878587	5.109072107041	5.05158199530718	5.24130009343594	5.10881457651765	5.62489429178983	0.11060008450371	0.728087368736291	0.891779294267982
Merged-chr19-5054047-3	chr19	5053949	5054149	+	772.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145495, intron 9 of 9)	intron (NM_145495, intron 9 of 9)	3241.0	NM_145495	225870.0	Mm.271922	NM_145495	ENSMUSG00000024883	Rin1	-	Ras and Rab interactor 1	protein-coding	3.75865652922227	3.88305486875017	3.54587695892492	3.36412017722684	3.96830287710059	3.54015175982319	3.53258898103923	3.70693594081925	0.191447466152915	0.709004280407378	0.883225679693603
Merged-chr11-120573116-4	chr11	120573003	120573203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011032, exon 1 of 11)	5' UTR (NM_011032, exon 1 of 11)	150.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	9.23585838633157	9.50564661492867	9.21306918559395	8.875248038891	9.0877096543702	9.41256434060982	9.11991284180015	8.9804548271749	-0.07991279463077	0.664678226458634	0.861062110279118
Merged-chr12-24492728-4	chr12	24492630	24492830	+	953.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5851.0	NM_020614	21340.0	Mm.39082	NM_020614	ENSMUSG00000059669	Taf1b	4930408G01Rik|A230108M10Rik|TAFI68|Tafi86|p63	TATA-box binding protein associated factor, RNA polymerase I, B	protein-coding	4.91723392775979	4.79377788914927	5.28939800927587	4.82361266385155	4.48778434050986	4.81833034021222	5.26253398168492	5.14416205199263	-0.0150891203015229	0.967650376761203	0.988556045979739
Merged-chr5-140795051-3	chr5	140794946	140795146	+	977.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	35385.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	3.73661490023325	3.1518458635485	3.90190031353442	4.00907538659504	3.02155496698086	3.1746048129085	2.97598236816522	2.90396100197859	-2.87597955990461	3.40757663057212e-05	0.000807954353722496
Merged-chr16-33191072-3	chr16	33190864	33191064	+	912.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176840, intron 1 of 12)	intron (NM_176840, intron 1 of 12)	5893.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	2.87856574744858	2.60242273371356	3.36928015342744	2.8526364268889	2.69169619799227	3.05530940970579	3.10703391374253	2.94201536057509	0.0172275545299915	0.979846913528628	0.992764484706202
Merged-chr2-32237268-6	chr2	32237114	32237314	+	972.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145145, intron 1 of 19)	intron (NM_145145, intron 1 of 19)	531.0	NM_145145	99011.0	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	3.02826222254402	2.96502457112462	2.63716830283221	2.75458250765154	2.78518954018343	2.95566969966042	2.95963896518196	3.0820501237127	0.416915996516823	0.50386941446374	0.770592637321386
Merged-chr4-55508894-2	chr4	55508791	55508991	+	980.166626	f0_balb.idr|f1_balb.idr	Intergenic	MTEb|LTR|ERVL-MaLR	23584.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.61534271340741	4.93713833969933	4.57918450600715	4.77621337450029	4.17104220429928	3.96865916196603	4.16995900865443	3.96581686601926	-1.5892965923813	8.8435579385231e-05	0.001832001194721
Merged-chr18-52468277-3	chr18	52468196	52468396	+	956.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026040, intron 1 of 7)	intron (NM_026040, intron 1 of 7)	2603.0	NM_026040	67222.0	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding	3.48813161005203	3.49854954536264	3.48855658360596	3.4609834704168	4.21585960232003	4.92557827314364	4.06773233877059	4.83673027871336	2.83965790199499	1.93603648630473e-08	9.74576669439068e-07
Merged-chr2-58157148-4	chr2	58157046	58157246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139200, intron 1 of 7)	intron (NM_139200, intron 1 of 7)	2976.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	6.25921694696798	5.92703474395805	6.26032929845708	6.48954397832775	6.09495412450739	5.56100736683464	6.53217223600747	5.74696829528138	-0.326248890504089	0.28003247272431	0.592118554434484
Merged-chr4-59553703-3	chr4	59553596	59553796	+	949.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4332.0	NM_144904	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	3.78036667797912	3.89242489695138	3.97553344339112	4.02253920754239	3.63137623597874	3.72999309354652	3.81663991418429	3.87963774649827	-0.481958098130447	0.284332857526395	0.596250433546571
Merged-chr14-120323214-4	chr14	120323042	120323242	+	822.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 1 of 8)	intron (NM_001360376, intron 1 of 8)	16690.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	3.25331744860656	3.09377325167944	3.05771464777734	3.41599744393259	3.54997038371322	3.48388571090089	3.30078593741583	3.57255067716366	0.886567130653246	0.109253603404743	0.365045403780979
Merged-chr1-36960315-4	chr1	36960217	36960417	+	918.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20790.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	4.41667383854067	4.00751617292448	3.53567020195286	3.88544147020507	4.41898158818971	3.85076233206258	4.20698805518071	3.84299398030434	0.296370231858946	0.558413543961457	0.803138364227774
Merged-chr17-34257842-4	chr17	34257740	34257940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5387.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	8.18137540417995	8.18503588408724	7.69874073476149	7.49730890056491	8.3605461935049	8.2622604672803	8.12017664439863	8.08552813720628	0.378815859960022	0.0725565402033455	0.289598303164557
Merged-chr11-115712590-4	chr11	115712518	115712718	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4021.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	4.3540299324769	4.32160500387821	4.51814681347713	4.17007765788465	4.12776851360402	4.39244548399231	4.41853804176957	4.58946461334696	0.118413917940469	0.763331767862476	0.90713960302321
Merged-chr1-106172821-7	chr1	106172749	106172949	+	971.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133821, exon 1 of 17)	exon (NM_133821, exon 1 of 17)	980.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	4.81608641988476	4.74266814881581	5.09580409608006	4.97042028480769	4.78686902787074	5.13706050839301	5.18899415881306	4.96061359718988	0.203040779396696	0.536444534515074	0.790413895500872
Merged-chr14-57665063-4	chr14	57664960	57665160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020506)	promoter-TSS (NM_020506)	-104.0	NM_020506	57258.0	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	6.60629470438114	6.72253515034252	6.84967802765685	6.75610401975527	6.59049661915361	6.59865363609093	6.40669402576291	6.48768557495813	-0.305902297019989	0.136198785615042	0.410658011622976
Merged-chr10-13201959-4	chr10	13201905	13202105	+	944.857178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8868.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	4.86633620002448	4.76367876372312	4.69023467326681	4.96193475232433	4.58226832756283	4.47342296348281	4.27525174218948	4.64863701646791	-0.708736198547411	0.0477836911900725	0.225514999875
Merged-chr15-63613293-4	chr15	63613175	63613375	+	930.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133667.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	4.24433124746885	4.3820903330582	4.72255857135323	4.65552758417385	4.34645316306574	4.4666820577698	4.40475290285915	4.03421318500935	-0.464955252203689	0.245065417114123	0.556170860493583
Merged-chr14-15062931-4	chr14	15062859	15063059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	242144.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	6.45040533808697	5.8923150491825	6.84484639303187	6.78295667358929	6.16282516501581	6.29977741735984	6.56305803658838	6.62222548414863	-0.187070367890018	0.507775524019545	0.773066972913507
Merged-chr13-74245682-4	chr13	74245579	74245779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317351, intron 3 of 9)	intron (NM_001317351, intron 3 of 9)	-36979.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	7.54369256472962	6.86787915935868	7.21413442758089	7.72899305359416	7.54793213980204	7.41450295189611	7.72482974889407	7.34995368984048	0.171421373874948	0.464935520628234	0.745710042790831
Merged-chr17-13010122-4	chr17	13010028	13010228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013671, intron 2 of 4)	intron (NM_013671, intron 2 of 4)	2289.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	7.26978746545513	8.07001946567852	7.5771514798298	6.79489190402655	7.57165871684599	7.66664220597063	6.97133433231941	6.84576107270545	-0.267222775526481	0.54541658081688	0.795911485069713
Merged-chr4-107066878-4	chr4	107066723	107066923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175471)	promoter-TSS (NM_175471)	43.0	NM_025500	56280.0	Mm.29517	NM_025500	ENSMUSG00000028622	Mrpl37	2300004O14Rik|AI132596|MRP-L2|Rpml2	mitochondrial ribosomal protein L37	protein-coding	7.4944843474689	7.33821237925486	7.48672802194811	7.47723278927831	7.21203900165153	7.18413545395967	7.37522355043847	7.13967650276575	-0.296030290806951	0.0956600624601819	0.338620826827794
Merged-chr16-43506461-3	chr16	43506374	43506574	+	695.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 3 of 6)	intron (NM_181058, intron 3 of 6)	-86278.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	3.5531503783789	3.37359973593268	3.39202458172139	3.63461573917582	3.46540240099382	3.17758974179569	3.37953424623932	3.60111103977403	-0.278999443464649	0.595890523753585	0.824220761703025
Merged-chr12-72761095-4	chr12	72760984	72761184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008910)	promoter-TSS (NM_008910)	-127.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	7.90808968917675	7.99846824884651	8.00986625771984	7.88373265741557	8.46265857220365	8.35510541084694	8.43206495069651	8.21346271952092	0.542011001277407	0.000530018946210792	0.00809054655207762
Merged-chr17-45579048-4	chr17	45578942	45579142	+	763.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-5781.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	4.08548960140296	4.11692996144732	3.63325663736499	3.47269107839853	4.16331141324104	4.39479312261357	4.40060371954345	4.34334161826039	1.25280881468371	0.00652904159715568	0.0577879447704482
Merged-chr10-95330879-3	chr10	95330777	95330977	+	733.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5399.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	3.7443433639875	3.64984346562572	3.94495692333043	3.17124665604654	4.05589486223937	3.75267317224494	4.01555994831386	3.98790413785849	0.914421289053778	0.0741167262116043	0.293284387102027
Merged-chr7-95830077-4	chr7	95829971	95830171	+	887.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-341173.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	5.28928586890905	5.09404591884661	5.91264664878761	6.1545413014762	4.73738208809799	4.63614709589214	5.03731177921466	4.43862629726079	-1.80086767796977	5.93499274226561e-06	0.00017285059263573
Merged-chr1-152597639-3	chr1	152597556	152597756	+	899.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	27561.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	3.66040163151562	3.6365148481895	3.20525809786242	2.78677439447013	3.03187900094651	3.32151002356519	3.00007579010745	2.93682951526863	-1.08701254665748	0.101793940519031	0.350149062993244
Merged-chr18-20784888-4	chr18	20784788	20784988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38484.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	7.19177198342999	7.43151936848826	7.06634971480265	6.82974222792771	7.35082904208976	7.06180694711899	7.30103443913896	6.56283777261495	-0.0437161699365592	0.859633957782021	0.946931697246336
Merged-chr7-60004372-4	chr7	60004232	60004432	+	827.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082962, intron 2 of 10)	intron (NM_001082962, intron 2 of 10)	867.0	NM_001349694	20646.0	Mm.274995	NM_013670	ENSMUSG00000102252	Snrpn	2410045I01Rik|HCERN3|Peg4|SMN|sm-D|snRNP-N	small nuclear ribonucleoprotein N	protein-coding	4.10324430753942	3.48375216504892	3.54305545783002	4.05772449400066	3.65468807269592	3.94981230020667	3.70667364318159	4.18099755981764	0.148741108069796	0.774438155270059	0.911829381909676
Merged-chr1-192736150-3	chr1	192736034	192736234	+	611.988892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 4 of 11)	intron (NM_144881, intron 4 of 11)	35085.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	3.17524946302603	3.10830947094938	3.17568416448372	3.06045215691776	2.84605856341237	2.81608465436394	3.31899843352125	3.17392610684604	-0.295874651156504	0.62519727639919	0.83975085269409
Merged-chr12-80945467-4	chr12	80945352	80945552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347416)	promoter-TSS (NM_001347416)	-47.0	NM_001347416	20384.0	Mm.43331	NM_009159	ENSMUSG00000021134	Srsf5	Sfrs5	serine/arginine-rich splicing factor 5	protein-coding	7.03567015825994	7.33198529126928	6.72420844080546	6.8666424248163	7.56477442906847	7.57227810584468	7.05055262500888	7.21865241925977	0.496804140531115	0.0290795201565053	0.163980258305038
Merged-chr10-57628762-4	chr10	57628650	57628850	+	898.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3231.0	NM_008863	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	4.22621784508849	4.41099216041787	4.53612140986618	4.9415847969445	4.41705620722361	4.24926222609166	4.51503918559509	4.36585148836435	-0.42531382698035	0.299038247003314	0.611311162969898
Merged-chr10-71362592-3	chr10	71362509	71362709	+	667.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	intron (NM_027184, intron 1 of 5)	14846.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	3.60767149207955	3.59837540497778	3.70635383301045	3.36300068704677	3.51495587830306	3.5601964071197	3.43231812797052	3.38423799460249	-0.292979643848854	0.560794046365485	0.804731028246143
Merged-chr16-24964519-4	chr16	24964417	24964617	+	872.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-95122.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	4.4911299624912	4.29941249185206	4.23092616701341	4.68638972154202	4.49804500344656	3.9651565468613	4.25967946210761	4.63687599622132	-0.18810957542168	0.656263000737728	0.856569188570631
Merged-chr13-112998554-4	chr13	112998443	112998643	+	844.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001037914, exon 6 of 7)	exon (NM_001037914, exon 6 of 7)	4675.0	NM_001037914	622408.0	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	3.28871330276538	3.2419781181502	3.35100989163527	3.46214515965453	3.79781127663443	3.46450973889906	3.65481801593652	3.51895843398604	0.901761437563754	0.0774349285127755	0.300993598004456
Merged-chr1-60662667-5	chr1	60662543	60662743	+	855.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83745.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	4.46956458542277	4.05372727112451	4.78411282157575	4.14798877432895	3.89436154184138	3.77032901732924	3.7608641200806	3.88970786368682	-1.47091055608391	0.00186662779096963	0.0221657755538664
Merged-chr12-84773083-4	chr12	84772973	84773173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023409)	promoter-TSS (NM_023409)	39.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	9.21979704643378	9.48317483266508	9.26356709579786	9.15028265334674	9.28996488445163	9.37420076750239	9.51805294291941	9.10320621821149	0.0562161270468873	0.725693306890719	0.890921883682774
Merged-chr15-86168750-4	chr15	86168651	86168851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-16977.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	7.06012205456862	6.66171447962255	7.1828264969465	7.21915044602455	6.58524794246508	6.62382091521529	6.71211390855382	6.97246255698471	-0.455557413800833	0.0428025806912236	0.210389123059222
Merged-chr18-58530596-4	chr18	58530498	58530698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25642.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	5.31393020249077	5.15514193972458	5.61713881204084	5.64601813863609	5.34470455060924	5.21909472608356	5.22543615332161	5.7731742455978	-0.0836149195234988	0.790293045169523	0.918828686312538
Merged-chr13-12569921-4	chr13	12569812	12570012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026184, intron 1 of 15)	intron (NM_026184, intron 1 of 15)	4029.0	NM_026184	67475.0	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding	6.69985473589721	6.57431374971791	6.91143000887535	6.98965669013754	6.84993354602532	6.73319902272109	6.82389280559935	7.0293541605051	0.069886006784928	0.741226624723037	0.898139463026673
Merged-chr1-164316884-3	chr1	164316782	164316982	+	753.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178071, intron 3 of 9)	intron (NM_178071, intron 3 of 9)	9210.0	NM_138314	171567.0	Mm.219428	NM_138314	ENSMUSG00000026575	Nme7	D530024H21Rik|Nm23-M7|Nm23-r7	NME/NM23 family member 7	protein-coding	3.5739458140797	3.48754000657317	3.27546702377784	3.28954292297631	3.9901273773093	3.51854275123538	3.66140030856823	3.5724222527926	0.975313938647543	0.0539246847965963	0.242435871676533
Merged-chr10-61476246-2	chr10	61476146	61476346	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153542, intron 1 of 4)	intron (NM_153542, intron 1 of 4)	413.0	NM_153542	216011.0	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	4.60549255321794	3.96918957379487	4.18319787819611	3.85967755047174	4.03945215815518	3.9993845316609	4.41017717164324	4.18058520003991	-0.0226348101656833	0.960369277262907	0.985883800393479
Merged-chr3-27710519-4	chr3	27710405	27710605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173182)	promoter-TSS (NM_173182)	-53.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	6.85794189125374	6.93854636090841	6.6981857323094	6.89999299701793	6.89866676592302	7.07613967473604	7.08293634743075	6.89480663474836	0.181058180332972	0.351464353152789	0.658893189148013
Merged-chr11-104317461-3	chr11	104317393	104317593	+	702.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285454, intron 6 of 9)	intron (NM_001285454, intron 6 of 9)	86057.0	NM_001285454	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	3.02727761092509	2.8131120454498	3.02771904333067	2.77926589815008	2.69718494534041	2.76188023809189	2.78301405507911	2.72500290642442	-0.802699330459477	0.207268954460589	0.511181071672855
Merged-chr1-88695279-4	chr1	88695171	88695371	+	810.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6920.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	4.09371603525506	3.92829378368264	4.30198664473302	4.25096678722926	3.85496609127454	3.78977493270688	3.88388151397836	4.04590387653992	-0.705803533265302	0.104631464388429	0.355716834784757
Merged-chr14-47187945-8	chr14	47187819	47188019	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008102, intron 1 of 5)	intron (NM_008102, intron 1 of 5)	1494.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	4.15523646824574	3.9487042097944	4.38632920190794	4.29738098469851	4.53276757317976	4.42745764087685	4.27989813208922	4.71502360573224	0.677300647800234	0.0879580792559786	0.323553908184047
Merged-chr11-34031536-4	chr11	34031429	34031629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-15399.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	8.29458010603427	8.6017949260701	8.48152372583055	8.36389875342241	8.35859708465831	8.55127258034739	8.52316629806597	8.26158386104154	-0.0160772315177564	0.921304428730642	0.970837889831688
Merged-chr2-11705793-4	chr2	11705708	11705908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271501)	promoter-TSS (NM_001271501)	96.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	5.55244134340187	5.34417733902365	5.65697297993733	5.45604767849693	5.72513691059754	5.52605432947022	5.91374305005091	5.28038398748907	0.232959327617976	0.418084963138146	0.711628236434313
Merged-chr8-70699636-1	chr8	70699536	70699736	+	1000.0	f0_balb.idr	exon (NM_010592, exon 1 of 1)	exon (NM_010592, exon 1 of 1)	1897.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	6.49438695414609	6.77247991763577	6.27214420538735	6.0326202780691	6.84753671343528	6.90433760319686	6.85303177308152	6.50782580758909	0.544359977422798	0.0296548481473026	0.165943587757614
Merged-chr4-117132061-3	chr4	117132006	117132206	+	667.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313916, intron 5 of 14)	intron (NM_001313916, intron 5 of 14)	1857.0	NM_013807	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	2.96397352428387	3.12870357752215	3.25981628207809	2.68258938214548	2.76948422490536	3.07655016487533	3.13669276792398	3.35921249785093	0.311869199341907	0.628069667232207	0.841427212108636
Merged-chr9-49483569-3	chr9	49483426	49483626	+	803.0888669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172770, intron 2 of 21)	intron (NM_172770, intron 2 of 21)	2699.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	4.01811558944749	3.72490848407904	3.46631598781259	4.1360185648609	2.91490184757196	3.10518233276579	3.27025066645272	3.14205310357036	-2.99653359226971	5.1056781710122e-06	0.000150670425594725
Merged-chr13-98807863-4	chr13	98807770	98807970	+	958.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 1 of 25)	intron (NM_172591, intron 1 of 25)	7579.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	4.69584665377482	4.66523380269023	4.37914114328032	4.69455075856758	4.77443776865044	4.20356313510328	3.81725309190867	4.58363816803717	-0.471228645687894	0.297806731313173	0.609987985766329
Merged-chr4-150240225-4	chr4	150240083	150240283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023119, intron 2 of 11)	intron (NM_023119, intron 2 of 11)	2859.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	5.13994480523508	5.35643494774432	5.82868446526604	5.03991056346779	5.41149525754095	5.89043692825281	5.6175191423367	5.51336399027504	0.433680576095448	0.179953710012715	0.476274452479923
Merged-chr18-80420265-3	chr18	80420171	80420371	+	922.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	49396.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	3.53549286569833	3.56828888655298	3.47461205315483	3.94100220189372	3.92500170697874	3.8225741058972	3.92612241687118	3.6486926953525	0.510397942605903	0.306516025644351	0.618988968971523
Merged-chr19-11240704-3	chr19	11240600	11240800	+	853.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045317, intron 1 of 2)	Lx|LINE|L1	25451.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	4.06067767319178	3.81135086373479	4.27025733558783	3.86858226282775	3.87865210211405	4.13869807542741	3.84952726737818	3.86298852457502	-0.192779492128138	0.665760134267787	0.861618222095799
Merged-chr12-73964980-3	chr12	73964931	73965131	+	853.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178392, intron 1 of 9)	intron (NM_178392, intron 1 of 9)	501.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	3.20553624265641	3.22445891888929	3.60399769540059	3.55312621380483	3.54666124360741	3.56268955558575	3.37903484613448	3.50024711049258	0.276293377740439	0.599041354979045	0.826146116839364
Merged-chr10-30803200-4	chr10	30803036	30803236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001358841, exon 1 of 16)	5' UTR (NM_001358841, exon 1 of 16)	190.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	6.7246094046614	6.46286607355419	6.72579338836875	6.77573455949818	6.62199339850651	6.68000888381604	6.56940674917083	7.14932221497979	0.132193271225825	0.564661373764903	0.806890685254502
Merged-chr17-28927368-2	chr17	28927268	28927468	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12044.0	NM_172450	207819.0	Mm.248931	NM_172450	ENSMUSG00000048905	4930539E08Rik	9130014G02	RIKEN cDNA 4930539E08 gene	protein-coding	2.93281506799451	2.98580743180524	2.93317301384359	2.7427226907799	3.16855486315847	2.91158631838647	2.7310308161378	2.99078062050821	0.316914900208036	0.60890225453696	0.830813576385782
Merged-chr10-24635633-4	chr10	24635534	24635734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	40192.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	7.10193460336288	7.61425640021066	7.71773179543312	7.67199788854201	7.43350575316776	7.21771860458752	7.17393936469071	6.99496190807785	-0.446182514360416	0.0373687736703353	0.19294007986949
Merged-chr4-41737744-4	chr4	41737644	41737844	+	918.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001286551)	TTS (NM_001286551)	3615.0	NM_001286540	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	5.09997922432785	4.89297397769356	4.60860378086655	4.82333271090183	4.95464144937164	4.55622453564734	4.70925789204133	4.76662729229345	-0.204376866519067	0.557943944069984	0.802948476800432
Merged-chr7-80387944-4	chr7	80387852	80388052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010194)	promoter-TSS (NM_010194)	-6.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	6.97507318971425	6.8455191374004	6.86060112037643	6.95369927637743	6.59642555413663	6.68305935511563	6.72821359200899	7.01950948632714	-0.212315447774629	0.299950554769765	0.612179983023751
Merged-chr9-64704707-4	chr9	64704614	64704814	+	991.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 23 of 24)	intron (NM_001134399, intron 23 of 24)	33042.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	5.98187624486938	5.64346681521407	5.11780711443735	5.5909597180092	5.45893902297328	5.22390540138451	4.85654121005495	5.51741666319748	-0.564536476100439	0.0964431285524121	0.34029274015923
Merged-chr10-7955445-4	chr10	7955350	7955550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138667, intron 1 of 6)	CpG	673.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	6.19280607774694	6.63263751087199	7.03444582355227	6.50068825675243	6.55639184948013	6.67175072017036	6.47913343712041	6.60441739404541	-0.0624478982053517	0.799451129833318	0.922568099838429
Merged-chr16-55863573-4	chr16	55863467	55863667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134457, intron 3 of 5)	intron (NM_001134457, intron 3 of 5)	-24926.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	5.67242276229442	5.8562935326844	5.59223177348198	5.82644378197194	5.92120500482901	5.84881750676006	5.67061267510621	5.81755215947668	0.115494960999294	0.649588519883577	0.852797294781466
Merged-chr10-58446821-4	chr10	58446715	58446915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011240)	promoter-TSS (NM_011240)	-37.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	8.20784750147313	8.63842130731075	8.16620288668879	8.12054329982939	8.44663527046264	8.55082276040404	8.2576881320708	8.2394657049284	0.102829030491744	0.580488124317272	0.815734111205463
Merged-chr1-24461226-4	chr1	24461130	24461330	+	936.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 12 of 50)	intron (NM_007733, intron 12 of 50)	126207.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	4.14823985499747	3.59999221565293	4.4329536211833	4.22950630182364	4.35957636375437	4.22805092487802	4.03715486005485	3.78179229627275	-0.0321087350453514	0.947421446677146	0.981180141903573
Merged-chr13-8644993-4	chr13	8644897	8645097	+	921.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 3 of 10)	MIRb|SINE|MIR	226047.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	5.18523920077313	4.83411852943315	5.18613469815547	5.42344606880374	4.91516256090785	4.78537835213755	4.62903501108216	4.73269477094187	-0.810798364486454	0.0179869555627652	0.119130316367551
Merged-chr17-6142211-3	chr17	6142128	6142328	+	996.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054040, intron 1 of 13)	intron (NM_054040, intron 1 of 13)	4080.0	NM_054040	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	4.30299884721347	4.73436712249651	4.6889842923065	3.7698544875444	3.6814008909836	3.87692948333515	3.67425440732647	3.80986053450333	-1.78145776225126	0.000520262438549105	0.00796991288904704
Merged-chr8-126497757-4	chr8	126497652	126497852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22687.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	7.76061684796886	7.88192883758636	7.50851697166837	7.7746123351646	7.44623355414784	7.47241496899951	7.46212320004308	7.5033431098401	-0.359674366149221	0.0389231650195009	0.198190998134563
Merged-chr13-62956870-3	chr13	62956812	62957012	+	659.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-7981.0	NM_001289926	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	3.28965634673323	3.2066538427074	3.06876398334776	3.31890858361831	3.03883317136339	3.04912425184128	2.86579011695833	2.94066992917063	-1.04193280171023	0.0776853673149965	0.301404489268186
Merged-chr17-78434935-2	chr17	78434835	78435035	+	860.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-16783.0	NM_001285940	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	3.21550305129227	3.16396188786017	3.38526606486292	3.17758586189418	3.46224940271879	3.32687440220901	3.37166251346239	3.21431979883388	0.435512925205526	0.407922280502778	0.704075086986739
Merged-chr9-86478541-4	chr9	86478414	86478614	+	962.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177208, intron 1 of 38)	intron (NM_177208, intron 1 of 38)	11360.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	4.47154407896398	4.20480429680536	4.63979045084004	4.97775768785348	4.72354733000475	4.51004959042292	4.61812831752344	4.94791903389838	0.184384292955436	0.646535553224573	0.851366985708531
Merged-chr16-85262322-1	chr16	85262222	85262422	+	797.666687	f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-88615.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	2.09097167061527	2.04842113654113	2.17775717033107	1.84292092254829	2.37139593812825	2.90339370190127	2.82378804542393	2.60955511701371	5.57848481234004	2.29243483930393e-08	1.1315757241804e-06
Merged-chr1-53774206-4	chr1	53774125	53774325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133810, intron 2 of 7)	intron (NM_133810, intron 2 of 7)	10990.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	6.55830394769123	6.56928243108747	6.19169076389843	6.68351370590776	6.62457385761603	6.41151624072623	6.58789808040494	6.60170256527311	0.0519089095560755	0.816101068276645	0.929190254316708
Merged-chr2-12228500-4	chr2	12228405	12228605	+	760.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001309, intron 13 of 29)	intron (NM_001001309, intron 13 of 29)	-72741.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	3.55623111958011	3.63353970564196	3.67090014389364	3.97286596994777	3.96427647596487	3.8424654123906	3.65677185791191	3.77373187790768	0.241024522261971	0.616749262067765	0.835150401688917
Merged-chr7-97906091-3	chr7	97906000	97906200	+	859.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357362, intron 14 of 15)	ORR1D2|LTR|ERVL-MaLR	-13858.0	NM_177696	233537.0	Mm.375772	NM_177696	ENSMUSG00000035582	Gdpd4	4921513O04	glycerophosphodiester phosphodiesterase domain containing 4	protein-coding	3.64942709806824	3.05030066276659	3.14302024272954	2.48576588617497	4.42409904001431	4.20650077126385	4.53229202981375	4.45721207199326	3.80818397823584	0.0326979532905407	0.17722908422967
Merged-chr7-117490881-4	chr7	117490776	117490976	+	882.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175645, intron 2 of 11)	intron (NM_175645, intron 2 of 11)	109897.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	3.25844643272663	3.32766277621866	4.05054366857569	3.50643099828256	3.29423643883307	3.68055111576037	3.49257547593052	3.61275015247664	-0.147435823777239	0.792253692716913	0.91954542417963
Merged-chr2-166185603-4	chr2	166185500	166185700	+	882.7374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29917.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	4.65876884143712	4.3856708594991	4.33194919758591	4.31768093003808	4.48807578707761	4.41331187233192	4.31297772447047	4.88601005139305	0.273829039124187	0.4788445929938	0.7547139675738
Merged-chr11-53350762-4	chr11	53350655	53350855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033565)	promoter-TSS (NM_033565)	-12.0	NM_033565	93736.0	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	7.23705275768778	7.50941496496951	7.31471244550662	7.14938322379966	7.5566619455001	7.68737792879708	7.4084707264017	7.56704994916672	0.33896655170763	0.0665277270795405	0.274897079170708
Merged-chr3-105801356-4	chr3	105801253	105801453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145541)	promoter-TSS (NM_145541)	28.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	6.22315891149483	6.17418953377943	6.32241173482585	6.24580030778549	6.8658637309643	6.40184886526776	6.71602619966923	6.58858124465843	0.622126192688058	0.00488452063774355	0.0467305503325199
Merged-chr10-67483611-4	chr10	67483518	67483718	+	907.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54251.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	4.45142777061198	4.37437137452802	4.40971153596797	4.54776433384408	4.53510558322963	4.35135724429027	4.3466298447916	4.6058339796338	0.0309063455714007	0.933019420101069	0.975869550884564
Merged-chr4-129065910-5	chr4	129065790	129065990	+	864.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	PB1D10|SINE|Alu	7619.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	3.92563902914026	4.34061880389325	4.58458662123597	3.7259870305787	3.90486355103627	4.20509107143316	3.61471775513009	4.21178434797315	-0.463237738498708	0.361626995745898	0.66686307754598
Merged-chr5-134676285-4	chr5	134676251	134676451	+	958.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010717, intron 2 of 15)	intron (NM_010717, intron 2 of 15)	1897.0	NM_001305875	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	5.01058474884037	4.91124090196764	4.94996043111446	4.93685026118721	4.31925858250581	4.48966838805941	4.48020477385081	4.40482920842171	-1.16479136744849	0.00083224234408018	0.0116107757368254
Merged-chr13-97544789-2	chr13	97544689	97544889	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15211.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	2.55089569790771	2.46036972241154	2.2656754663732	2.08962849963987	2.32208561086328	2.59359664848063	2.54136247263873	2.78430892849388	1.20881118254676	0.115674929327198	0.376341540155735
Merged-chr3-145649645-8	chr3	145649592	145649792	+	962.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010516, intron 1 of 4)	CpG	293.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	3.97791343052674	3.60122524832186	3.45968038828769	3.52868038837046	3.66776984352668	3.81205030511183	3.72935351928477	3.9326667857479	0.411043037639396	0.393159914176076	0.692348578207297
Merged-chr1-39576786-4	chr1	39576711	39576911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033135, intron 1 of 6)	CpG	536.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	6.15175566326491	6.19292785362506	6.53314230013654	6.085567506716	6.61929268459671	6.19795709150439	6.68697848970193	6.37941325414398	0.373404677593374	0.122814436616711	0.388421608708245
Merged-chr15-55191367-4	chr15	55191288	55191488	+	885.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037937, intron 4 of 8)	MTC|LTR|ERVL-MaLR	57952.0	NM_001037937	97998.0	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	4.17908354812834	4.26172331493779	4.45174523384517	4.90426639052809	3.96621913261274	4.3571373052911	4.61864472132639	4.32015485919061	-0.388713996253932	0.383806118578847	0.685544183546393
Merged-chr4-117536009-4	chr4	117535897	117536097	+	942.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14327.0	NM_001356404	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	4.11581098223121	4.43834863347737	4.60656499969104	4.32319415291163	4.69284904840111	4.49137098586338	4.50917419627083	4.40367174252576	0.358687861695207	0.34307882131126	0.651791155237126
Merged-chr12-99564800-6	chr12	99564685	99564885	+	814.777771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136760, intron 1 of 3)	intron (NR_136760, intron 1 of 3)	944.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	3.77718126746292	3.59020087250331	4.11749600027928	3.75131840656575	4.24960738562424	3.71923419843262	3.86800373008334	4.27434085540127	0.651757469866259	0.169201875786996	0.46170705970244
Merged-chr12-117479911-4	chr12	117479852	117480052	+	893.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36527.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	3.95818298008949	4.12115200234781	4.00797392164088	3.95236531980053	4.13229194262033	3.97463546806837	4.03796944332839	4.0529742575691	0.125462306302072	0.760936279310143	0.906431126096988
Merged-chr1-152606405-4	chr1	152606293	152606493	+	948.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	L3|LINE|CR1	18824.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.86018019100087	5.2669946824367	5.26774896206484	5.13517295161673	4.87033797694698	4.79724814062271	4.5972393987984	4.42462103520727	-0.90832397023846	0.00914397966621742	0.0740033346971791
Merged-chr2-156278857-3	chr2	156278754	156278954	+	970.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 9 of 17)	intron (NM_172674, intron 9 of 17)	-33619.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	4.73974189427805	4.33879731304107	4.21122663751932	4.54970812345756	3.9394436429064	4.01833344667778	4.19284005685565	4.20865612319457	-0.963932007007595	0.0200947008989579	0.128458979948291
Merged-chr12-52120467-4	chr12	52120367	52120567	+	967.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 3 of 10)	intron (NM_029760, intron 3 of 10)	22721.0	NM_029760	76826.0	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	4.56780725195402	4.75142271466747	4.90218892066978	5.12620046597167	4.90657482172158	5.04038847287846	5.19918156671332	5.35643922165445	0.499530685592506	0.151118950939129	0.434377733267224
Merged-chr1-172550707-4	chr1	172550610	172550810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040558)	promoter-TSS (NR_040558)	96.0	NR_040558	71319.0	Mm.123774	NR_040558	ENSMUSG00000085184	4933439K11Rik	-	RIKEN cDNA 4933439K11 gene	ncRNA	5.72071974009824	5.74825758185666	6.05513090078056	6.20918237554223	6.0498793474654	5.90020088623263	6.42933639920034	6.13182320847501	0.274261344413963	0.308557390556739	0.620845739286685
Merged-chr2-152112106-4	chr2	152111990	152112190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029688)	TTS (NM_029688)	6566.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	5.9392846403287	6.33066033556808	5.52546212382731	6.06429518132963	6.17859845761445	6.33280082285997	6.30965966136965	6.43676054816512	0.469617919743532	0.0751430162327263	0.295846479340791
Merged-chr17-71448757-4	chr17	71448666	71448866	+	835.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028887, exon 6 of 48)	exon (NM_028887, exon 6 of 48)	26577.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	3.99778273996739	3.91952373218906	3.61745451886568	3.85994676768989	3.77997400949499	4.12189725492034	4.07097959508662	4.17166815617808	0.493992877341176	0.267346531772063	0.579029536243968
Merged-chr1-157019875-4	chr1	157019902	157020102	+	921.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80376.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	4.58775193899622	4.51530527177879	4.62505096954528	4.83037616417582	4.23446318909944	4.10919596148493	4.18377692706665	4.24806624326143	-1.08645427909784	0.00474191201598531	0.045716450682083
Merged-chr4-55526694-2	chr4	55526518	55526718	+	682.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010637)	TTS (NM_010637)	5857.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	2.34054885058801	2.40095738117838	2.26421932769074	2.21812087456012	2.32067974459855	2.71947779399617	2.5379348885908	2.77913982081803	1.63722536320781	0.0241084855871755	0.144917083466029
Merged-chr12-69985760-4	chr12	69985664	69985864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022028, intron 1 of 4)	intron (NM_022028, intron 1 of 4)	1238.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	5.94947130779148	6.81083651685962	5.54871311742748	5.60323257580429	6.20916037835524	6.46628127812334	5.82498942004647	5.94625149399406	0.0708730142680691	0.842684689201312	0.940251336238462
Merged-chr15-64234592-4	chr15	64234497	64234697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	78076.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	6.42220829366106	6.03421234150957	6.53768962778146	6.33869372699099	6.32870438382746	6.24853452418991	6.33832873701657	6.70740325191726	0.111775897077682	0.642817973429246	0.84935134647267
Merged-chr2-70968508-4	chr2	70968409	70968609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 7 of 9)	intron (NM_145524, intron 7 of 9)	49865.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	6.53732474153076	6.8237478831325	6.93746028573895	7.18037385557272	6.65336877717936	6.60835282641568	6.98759374152775	6.89400888177455	-0.157213668193664	0.497071879668143	0.766922288608437
Merged-chr19-18617631-4	chr19	18617504	18617704	+	903.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	MIRb|SINE|MIR	14209.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	4.33701403330259	4.40615700710548	4.97977026354461	4.12002198590204	4.08261831340369	4.22374666604255	4.22764000672858	4.29014781395266	-0.682931657293971	0.117897551030176	0.379875505173006
Merged-chr15-85131999-4	chr15	85131913	85132113	+	966.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080470)	promoter-TSS (NM_080470)	-56.0	NM_080470	140557.0	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	5.55404746591382	5.04351831351298	5.40144777830255	4.80369883148765	5.33654666818502	5.20097950376502	4.99920732531692	5.45090487480374	0.0816535503607726	0.811552250171061	0.927080800765956
Merged-chr2-103073607-4	chr2	103073523	103073723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019735)	promoter-TSS (NM_019735)	-52.0	NM_001355474	56369.0	Mm.24772	NM_019735	ENSMUSG00000010911	Apip	APIP2|CGI-29|Mmrp19	APAF1 interacting protein	protein-coding	8.72658914865427	8.69503571517792	8.55634683981359	8.72276735815261	8.64474331006649	8.78166062272174	8.77376460803934	8.81974636599241	0.0937096675499185	0.517707165972919	0.779011829301328
Merged-chr4-129830446-4	chr4	129830345	129830545	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	9737.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	3.75344551811959	3.76594989895019	4.27412062044664	3.57690594441554	4.2442261448406	3.81567180433605	4.13269818911247	4.19121427883205	0.681704026773313	0.148440274864402	0.430169787662783
Merged-chr9-121928676-4	chr9	121928591	121928791	+	915.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4c|LINE|L1	-8584.0	NR_033553	69430.0	Mm.482910	NR_033553	ENSMUSG00000043773	1700048O20Rik	1700022O21Rik	RIKEN cDNA 1700048O20 gene	ncRNA	3.62191170866028	3.55263437216425	3.89503904866117	3.81929993259402	4.09535416447946	3.6133470787469	3.97209540592153	4.30765390671473	0.806875686798677	0.0915716992263533	0.330677387206768
Merged-chr7-90052393-1	chr7	90052293	90052493	+	908.6666869999999	f0_c57.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	23234.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	3.06245634473888	3.17190994538962	3.21573994181779	2.59570800970547	4.03649103210099	4.34203768838545	3.87533924396506	3.64919228900422	3.62315199482573	7.351791690723e-09	4.00683905630913e-07
Merged-chr13-45600708-3	chr13	45600606	45600806	+	959.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 5 of 6)	ORR1F|LTR|ERVL-MaLR	93262.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	4.29928191692224	4.78183087411433	4.16942611746586	4.41097117202175	3.91747439951161	3.98480467312589	3.90189494329737	3.60620834176253	-1.51962352414292	0.000937965955363049	0.0127728101658287
Merged-chr10-117217017-4	chr10	117216912	117217112	+	836.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026570, intron 6 of 6)	intron (NM_026570, intron 6 of 6)	7495.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	4.05891529231685	4.04654322648733	4.05948121972373	4.29252293014626	4.696726232796	4.76165185340824	4.3336315550156	4.62536758599145	1.11458938154382	0.00495459205275158	0.0472295309659575
Merged-chr10-80033734-3	chr10	80033645	80033845	+	927.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	5914.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	3.74569078177233	3.83276447494024	4.08149691739605	4.05817020835769	3.79298619357622	3.86506071092168	3.67649869879895	3.89852103111436	-0.385995630337761	0.391993461299449	0.69167049807001
Merged-chr16-55839349-4	chr16	55839246	55839446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030612)	promoter-TSS (NM_030612)	-705.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	7.13840519670264	7.6573451206904	7.11592594559585	6.79304456830131	7.26874030663992	7.65406667946134	7.28841020769513	6.95844573980871	0.140391963885612	0.577187935812358	0.813924639099529
Merged-chr5-139398562-4	chr5	139398456	139398656	+	905.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-7831.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	4.4372668736529	4.87616262968485	4.13663243547129	4.3464523227603	4.85885373615971	4.73937598529699	4.58471606585416	4.64205504558551	0.516423397298523	0.183211668480622	0.48006630245343
Merged-chr4-115850160-4	chr4	115850059	115850259	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355174, intron 2 of 11)	intron (NM_001355174, intron 2 of 11)	10961.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	5.37865784335592	4.6355998298206	4.88478667925505	5.39002738951069	4.94158183469053	4.94419001724183	4.86161797044675	5.1219143101659	-0.296677133981206	0.407720834004831	0.703911157055426
Merged-chr11-89069480-3	chr11	89069376	89069576	+	689.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4365.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	3.65392311275117	3.64579820335744	3.23977798702714	3.70474984115368	3.12602259087484	3.00221663890897	3.10175306456824	3.11009030414209	-1.89677040045611	0.00142427756511722	0.0179082587541916
Merged-chr13-55329916-4	chr13	55329803	55330003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016662)	promoter-TSS (NM_016662)	-173.0	NM_016662	17121.0	Mm.20350	NM_016662	ENSMUSG00000021485	Mxd3	4631412E13Rik|Mad3|bHLHc13	Max dimerization protein 3	protein-coding	7.33163083052713	7.56912225478985	7.22904856047254	7.11437211620552	6.99795115994718	7.18173062874368	7.13771161075495	6.9599104590936	-0.336615600339161	0.0917765971807327	0.331232451613801
Merged-chr7-49467993-4	chr7	49467938	49468138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 10 of 37)	intron (NM_175272, intron 10 of 37)	168797.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	7.81086506822789	7.61517874566831	7.81952392112411	7.6968342068326	7.53488673884378	7.48896575735428	7.50453939519804	7.50871931099783	-0.294971992654323	0.0773362658770381	0.300748815442531
Merged-chr6-136717738-3	chr6	136717674	136717874	+	932.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145067, intron 18 of 25)	intron (NM_145067, intron 18 of 25)	-55881.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	3.31712278354973	3.15145518029897	3.53202467468943	3.5102377816242	4.13886805851912	4.37403342879877	4.14097780443022	4.54929233883693	2.60441817485197	1.62629340774874e-06	5.44487010678023e-05
Merged-chr5-36515328-4	chr5	36515218	36515418	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 7 of 13)	intron (NM_133910, intron 7 of 13)	15305.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	6.98506993400893	7.02982670347735	7.07405714316596	7.2257694893182	5.70811692561719	5.54435633532202	5.99792831135454	6.18355453378095	-1.79070645706835	8.91254714460616e-14	1.17915649294781e-11
Merged-chr1-138835550-4	chr1	138835443	138835643	+	896.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025565, intron 3 of 4)	intron (NM_001025565, intron 3 of 4)	6901.0	NM_001042577	16876.0	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	4.63522855876956	4.43203169429959	4.26310576902815	4.69594944393933	4.66955901504456	4.43838927367488	4.1965108235491	4.160886954591	-0.302460716489629	0.45528072171554	0.738860613109677
Merged-chr1-33916662-6	chr1	33916491	33916691	+	785.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 2 of 102)	ORR1D1|LTR|ERVL-MaLR	8366.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	3.04942778895569	3.04175412486745	3.10700713310334	2.89662443312358	2.89633263209304	2.96895755923943	2.85266158921594	3.15989624856072	-0.198499644104007	0.737346837451954	0.896374281276027
Merged-chr2-11542829-4	chr2	11542735	11542935	+	977.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	B3A|SINE|B2	11094.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	4.89628635655133	5.02998949237118	4.56425220677007	5.17837422383865	4.88434806994941	5.27136710499129	4.97844306896179	4.9651277675453	0.139108992996215	0.687178169085312	0.872152812040952
Merged-chr17-33503682-3	chr17	33503588	33503788	+	899.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20397.0	NR_137628	224697.0	Mm.29304	NM_172619	ENSMUSG00000024299	Adamts10	9430006O18|AW045948|Adam-ts10|Adamts-10|Znmp	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	protein-coding	3.16725309342153	3.34624843207984	3.33835650073841	3.64676454164748	2.90831051753345	3.14944207429471	3.03067827103012	3.22541256939106	-1.25348765704827	0.0347775220231196	0.184623302512204
Merged-chr16-23953857-2	chr16	23953757	23953957	+	968.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23063.0	NM_001008230	224055.0	Mm.39248	NM_001008230	ENSMUSG00000047531	Rtp2	Gm605	receptor transporter protein 2	protein-coding	3.60103595846412	3.46104548396449	3.37446488895808	3.14029813952533	3.44721104046706	3.66712623260834	3.42190059594764	3.95909420889804	0.799716500681718	0.131579218757745	0.403904809478786
Merged-chr12-76371019-4	chr12	76370921	76371121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178744, intron 1 of 1)	CpG-3289	755.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	5.65610434594693	6.00609710564527	5.44956252916266	5.67552670210721	6.31163359039454	5.77934440194709	6.08104698304713	5.98797492683849	0.559481626059967	0.0401594761134527	0.202286557942074
Merged-chr4-108834362-7	chr4	108834275	108834475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356361)	promoter-TSS (NM_001356361)	-73.0	NM_001356361	70533.0	Mm.379178	NM_027453	ENSMUSG00000028568	Btf3l4	4632412E09Rik|5730434I03Rik|AI316863|AU022207|AW552446	basic transcription factor 3-like 4	protein-coding	5.05184279378591	4.9505411231565	5.1559825305088	4.68085436569433	5.17246401709315	5.5419603579514	5.49810841851198	5.6400273668863	0.953400131679365	0.00254270796767708	0.0281039818882328
Merged-chr19-7040095-4	chr19	7039991	7040191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016737)	promoter-TSS (NM_016737)	-65.0	NM_016737	20867.0	Mm.258633	NM_016737	ENSMUSG00000024966	Stip1	Hop|Sti1|p60	stress-induced phosphoprotein 1	protein-coding	8.87218816290744	9.17839476847769	8.79332951498487	8.67166284784966	8.91647538570901	9.12703266544255	9.01399106861217	9.06185769729379	0.173590309925642	0.298749081312552	0.611000800469677
Merged-chr4-108118604-4	chr4	108118516	108118716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011327)	promoter-TSS (NM_011327)	-69.0	NM_011327	20280.0	Mm.379011	NM_011327	ENSMUSG00000028603	Scp2	AA409774|AA409893|C76618|C79031|NSL-TP|SCP-2|SCP-X|SCPX|ns-LTP	sterol carrier protein 2, liver	protein-coding	7.38185237683568	7.42796843744363	7.32213613693967	7.6396336483325	7.30824447284834	7.35614857101329	7.44162753468519	7.13916477106378	-0.194103072216221	0.299049081939552	0.611315755409977
Merged-chr13-113378476-4	chr13	113378402	113378602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124342.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	6.24837972580485	5.88189420910636	6.21260781185067	6.00806838399877	6.15917286444051	5.83746310987173	6.25308357102067	6.04887679665361	0.00418944975137987	0.986452057222312	0.995010290574724
Merged-chr11-121697716-3	chr11	121697610	121697810	+	914.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4717.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	3.89014736089465	4.82245224801197	4.31624284566005	4.41037819762037	3.70511961461051	3.89764364645627	3.81873061613857	3.88850050379907	-1.54578238307505	0.00112666944497793	0.0147988936010489
Merged-chr17-25318555-3	chr17	25318458	25318658	+	832.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053260)	promoter-TSS (NM_053260)	-96.0	NM_053260	114662.0	Mm.207082	NM_053260	ENSMUSG00000034039	Prss29	D19363|Isp2|mISP-2	protease, serine 29	protein-coding	4.21413993048115	3.99911509949508	4.63829754986125	4.78791360304404	3.92878922447454	3.63168267410725	4.14992657167978	4.30033766342176	-1.06909584287519	0.0291227307686418	0.16407526146756
Merged-chr4-19901288-4	chr4	19901189	19901389	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	21277.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	5.59041646038498	5.18522082310203	4.90752704002152	5.13744253541649	5.31441319359403	5.46896621257322	5.38373922843005	5.43452999317421	0.317797526349528	0.298304589520523	0.610424976353534
Merged-chr14-61757281-4	chr14	61757187	61757387	+	929.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74914.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	4.9097821393067	5.03989153559666	4.46729508295882	4.4463009996843	5.26633807814806	4.55105453639489	4.74377015517886	4.94085126548876	0.364776450334562	0.350884875175103	0.658345714219092
Merged-chr7-35167162-4	chr7	35167067	35167267	+	964.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-19218.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	4.79806502249242	5.05524192355297	5.08935970926541	5.35742939420737	5.15830316805343	4.97424543247424	5.37606714580389	4.79579908765891	-0.0191875548632839	0.955276435888199	0.984075265351039
Merged-chr10-41910890-3	chr10	41910788	41910988	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	23449.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	3.49136681462297	3.31249532657169	3.07430661352819	3.54545696352753	3.19000693702774	3.31916309520745	3.52662244427015	3.43789799329934	-0.0214307459754006	0.969081891437883	0.988869722693227
Merged-chr8-83100251-3	chr8	83100146	83100346	+	817.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65106.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	3.44855852846507	3.77363246496721	3.32259912788808	3.52794412335903	3.88907415349266	3.73566011147337	3.55059145158022	3.61644679556767	0.554178330750405	0.265882374387913	0.577605418176628
Merged-chr1-167618547-3	chr1	167618435	167618635	+	776.833374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159731, intron 1 of 8)	intron (NM_001159731, intron 1 of 8)	270.0	NM_001159731	20183.0	Mm.3475	NM_009107	ENSMUSG00000015843	Rxrg	Nr2b3	retinoid X receptor gamma	protein-coding	3.94541936548509	4.05611300824202	4.72788959731001	4.30284985709382	3.23728508903913	3.60397370214044	3.3261883800906	3.6723122088885	-2.58380213301245	4.533048225646e-06	0.000136027757020766
Merged-chr8-64951093-4	chr8	64950980	64951180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163747, intron 1 of 4)	B3A|SINE|B2	3895.0	NM_028427	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	5.30851483978643	5.57808302451113	5.67441412645858	5.74912517065232	5.10266454482496	5.5494078075049	5.59617109716353	5.76422807692188	-0.142845160003264	0.637535435367277	0.846815233895787
Merged-chr5-90682071-4	chr5	90681955	90682155	+	990.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41528.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	5.72500362569434	5.31419863023301	6.03390496046485	6.15003736595796	5.07840102601203	5.09274827788709	5.62510424978114	4.9033012211043	-1.12250109026272	0.00113926728768747	0.0149478168240197
Merged-chr4-122897184-3	chr4	122897091	122897291	+	689.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-11115.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	2.79544970914898	2.72178579554775	3.48651863192751	2.30723466821461	3.34224290076359	3.61012647816145	3.31499877759278	3.43412511319882	1.71707084931671	0.233785747936213	0.543492448306542
Merged-chr10-8883305-2	chr10	8883205	8883405	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	2765.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.26185805538572	3.55947799392372	3.26226019638289	3.06483234585417	3.4022293965435	3.4943158191487	3.52192994802704	3.26063374527616	0.462206409715	0.392387680186322	0.691929317183568
Merged-chr15-73716569-4	chr15	73716492	73716692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6553.0	NM_001166390	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	5.32951220456559	5.35557225038965	5.47046468068334	5.28858912621642	5.10288431256692	5.5611119599042	5.27419732280518	5.13550389068418	-0.155379150074333	0.59876126965105	0.826053129391413
Merged-chr15-53139482-1	chr15	53139382	53139582	+	1000.0	f0_c57.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	206701.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	5.2224367148961	5.37178511775616	5.37682185005617	5.26599756809471	5.70478216983267	5.19027152269712	5.56077245292442	5.11807208319607	0.219653474321546	0.470224582696307	0.748973227079762
Merged-chr19-4310041-4	chr19	4309965	4310165	+	873.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3843.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	3.87885238257979	3.68133572388785	3.62098900753762	3.85698911325223	4.58688831149624	4.7629070674757	4.30719368821762	4.68903647249857	2.03539989047229	2.90449755040478e-06	9.17210430968331e-05
Merged-chr9-106234197-3	chr9	106234105	106234305	+	970.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020559, intron 10 of 10)	intron (NM_020559, intron 10 of 10)	11607.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	3.71178418436503	3.91579718639336	3.65612368077804	4.24881074941966	4.23729750505969	3.44826026790156	3.52407448596407	3.81562476901175	-0.299894254818038	0.589400379443257	0.820464677958613
Merged-chr4-123919029-2	chr4	123918929	123919129	+	764.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_017475, intron 1 of 6)	ID_B1|SINE|B4	1596.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	3.0587204344575	2.84402629528067	3.11168377634645	2.75781131490469	2.93289111644848	2.72002530565646	2.74966143497015	2.75689916242359	-0.661758322599088	0.304846412979548	0.617375148144924
Merged-chr11-29692827-4	chr11	29692735	29692935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194053)	promoter-TSS (NM_194053)	-63.0	NM_194053	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	9.31762196443176	9.38700578872039	9.42323978473746	9.27447024860284	9.33390161276887	9.37375437209714	9.40101345782743	9.13534573696042	-0.0428522550608606	0.761338284483411	0.906512173824769
Merged-chr4-14826580-4	chr4	14826488	14826688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152812)	promoter-TSS (NM_152812)	-1.0	NM_152812	72201.0	Mm.387724	NM_152812	ENSMUSG00000040550	Otud6b	2600013N14Rik|AU015433	OTU domain containing 6B	protein-coding	9.11213788442683	9.08824213931507	9.24948509804835	9.20762838411652	9.0049972082585	9.120176014361	9.21496650896488	8.71151872416568	-0.173703079230349	0.282322460422066	0.594517682403819
Merged-chr15-43477146-4	chr15	43477041	43477241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046064)	promoter-TSS (NR_046064)	-88.0	NM_025736	66736.0	Mm.244512	NM_025736	ENSMUSG00000022337	Emc2	4921531G14Rik|AV060620|AW209495|Ttc35	ER membrane protein complex subunit 2	protein-coding	9.05236920771482	9.03323088117314	9.17816879593631	9.35589778454333	8.98242647439853	9.14242351146079	9.39558008576648	8.86693172523279	-0.065965072953298	0.704034015974259	0.88102034499001
Merged-chr7-92670081-4	chr7	92669974	92670174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029078)	promoter-TSS (NM_029078)	-162.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	9.41915639633492	9.45112065914385	9.59073081655993	9.44612290676355	9.4128797762838	9.60677139074035	9.48289153880365	9.24879582525283	-0.0420602065252218	0.772544230657556	0.910940763350478
Merged-chr2-68825578-4	chr2	68825477	68825677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35864.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	6.03947789486471	6.2926898308996	6.40561374469457	6.26422316142664	6.06370766944611	6.26075106337053	6.35611076736846	6.10132115695025	-0.0965236193455626	0.678152807465552	0.868016354520324
Merged-chr6-145792618-3	chr6	145792521	145792721	+	982.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15762.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	4.18113722755784	4.42722454666718	5.12909548180454	5.02922999679282	3.84806715932406	4.03356372204573	4.06039705937216	3.77539337769457	-2.0397355939607	1.76958304961369e-05	0.000458026006867102
Merged-chr10-91124069-4	chr10	91123959	91124159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133668)	promoter-TSS (NM_133668)	-96.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	8.5974523380692	8.73683086427215	8.39275370699642	8.54895272018587	8.71622346236249	8.75799619367255	8.77146082931381	8.64768358042824	0.185781839039622	0.221161161763926	0.52921503170828
Merged-chr1-64736637-8	chr1	64736490	64736690	+	864.6823119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022721, exon 2 of 2)	exon (NM_022721, exon 2 of 2)	1160.0	NM_001042659	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	3.77537540859144	3.2830339386048	3.67687471025805	3.33499110614061	3.89850094642457	3.68753043819845	3.49911744343277	3.7736245003299	0.639254386271252	0.210549306479961	0.515059596726025
Merged-chr2-118507292-4	chr2	118507163	118507363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie2b|DNA|hAT-Charlie	-27567.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	5.59449407586913	5.44683981188296	5.24700631659362	5.25523840957671	5.56676368010339	5.74287936860666	5.37703430318004	5.56589536953672	0.320373902740183	0.254340317875313	0.565669587740499
Merged-chr19-41242187-4	chr19	41242109	41242309	+	863.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133352, intron 5 of 14)	intron (NM_133352, intron 5 of 14)	21795.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	4.55218610215319	4.24619918397665	4.78987161011328	4.22176553468234	4.17568163452623	4.18428600126283	4.241876756652	4.43285539503528	-0.476582231924748	0.246572962770644	0.557810798331382
Merged-chr1-59755486-4	chr1	59755387	59755587	+	940.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-8792.0	NM_007561	12168.0	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	5.30615401057076	5.54476129111288	5.39138939772283	4.87956076552091	5.21484623468343	5.0389232709969	5.28055343018772	4.97368330418945	-0.281435404171939	0.396464016926534	0.69519327480908
Merged-chr17-81703455-4	chr17	81703337	81703537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	34950.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	6.40516667744653	5.95790713322525	6.95934314610265	6.87221537830995	6.46412845270413	6.28509761246724	6.39106290956893	6.45405930111179	-0.310316587802022	0.263786233209255	0.575846172287357
Merged-chr19-42156408-3	chr19	42156314	42156514	+	864.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	9025.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	3.26533679465072	3.14398636240106	3.21158437612806	3.19759084992758	3.03015388000776	2.85721818415413	3.19904841798968	3.15331388264243	-0.550184105574292	0.337555164537767	0.647327075373378
Merged-chr1-172341102-4	chr1	172341006	172341206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039484)	promoter-TSS (NM_001039484)	-104.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	6.22072513938633	6.58149740437398	6.66939193365559	6.61019740238201	6.43901288709336	6.51677855437213	6.44918503778537	6.4607633333412	-0.108097576160954	0.62100767593787	0.837616640748534
Merged-chr7-80766217-4	chr7	80766097	80766297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 4 of 37)	intron (NM_016721, intron 4 of 37)	37134.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	6.13927927011027	6.43656402698835	5.69883622417973	5.56013718980406	5.98489947434623	6.06972574362931	5.30923310588998	5.52587227674757	-0.382625022679275	0.255385076500843	0.566907550868438
Merged-chr19-12009678-4	chr19	12009565	12009765	+	915.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27075.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	5.14415806850126	4.79564734407618	5.08653759378712	4.74227256002825	4.59975015107292	5.03003260759726	4.51141666226065	4.70138718510102	-0.458373096737645	0.200385477236789	0.502485838102051
Merged-chr11-6546707-5	chr11	6546554	6546754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190343)	promoter-TSS (NM_001190343)	-233.0	NM_146014	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	6.4531441966768	6.41267996160234	7.1822293695292	6.53136122362554	6.72321691558255	7.1591268754461	6.28732092472277	7.11434801397672	0.258382811693462	0.366188670671949	0.670756926059822
Merged-chr13-4759815-2	chr13	4759712	4759912	+	616.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-150648.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	3.59006365510462	3.09619953633838	3.04541170192916	3.31510548119082	2.87149681698226	2.87972228917813	2.76486099625473	2.98061810912505	-1.73974970896091	0.00724343078439436	0.0624415840865212
Merged-chr1-59670799-4	chr1	59670702	59670902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009460)	promoter-TSS (NM_009460)	32.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	6.41611609039085	6.54562606806178	6.09954975989084	6.15293600191257	6.65551700387007	6.72582379126495	6.50109223922262	6.5298555783963	0.437328509510867	0.0537237203178863	0.24194879395804
Merged-chr11-107470775-4	chr11	107470651	107470851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145823)	promoter-TSS (NM_145823)	-31.0	NM_145823	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	7.35221458635053	7.52914983446436	7.84059713415615	7.45808631520693	7.50542971209085	7.69975622207518	7.91908682159378	7.64928445412717	0.190307568360265	0.328751262173524	0.640144325858488
Merged-chr13-21780440-5	chr13	21780298	21780498	+	878.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020034, exon 1 of 1)	exon (NM_020034, exon 1 of 1)	227.0	NM_020034	56702.0	Mm.221314	NM_020034	ENSMUSG00000058773	Hist1h1b	H1.5|H1B|H1f5|H1s-3	histone cluster 1, H1b	protein-coding	3.88405685015921	4.04393688138607	3.88458575370169	4.14565482759212	3.91698433582952	4.11361533944477	4.15956700256794	4.48390369066467	0.447674512977003	0.306130652729109	0.618614402981071
Merged-chr13-81133704-4	chr13	81133521	81133721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	169547.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	6.30442776824256	5.82188909069908	6.7273170485608	6.39379472579538	6.00968374952181	6.15759233559045	5.92618025207198	6.12842416993923	-0.447409060791504	0.09897342945664	0.344920099516598
Merged-chr2-155369717-4	chr2	155369617	155369817	+	914.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-12139.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	4.94391209491368	4.51608520194498	5.04504409016413	4.86016212469231	4.88108622684612	4.97284600522402	5.02026666781768	5.16382093635633	0.312617638215443	0.347479635543719	0.655506340921964
Merged-chr3-41408068-3	chr3	41407953	41408153	+	819.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85146.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	3.58772474509442	3.41191524674132	3.69354987105078	4.00293034599502	3.79884027296859	3.64753024909771	3.40078974311212	3.58627086760452	-0.262387468790714	0.615912649580638	0.834682833891823
Merged-chr17-50880202-4	chr17	50880105	50880305	+	911.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 13 of 21)	(CAAAAA)n|Simple_repeat|Simple_repeat	181524.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	4.71002203855557	4.64774445142965	4.96537040824654	4.82612338125054	5.18459743158284	4.71756501756113	4.64849689994072	4.99446663650303	0.252320567032024	0.468756894470097	0.747931420316418
Merged-chr8-117338391-4	chr8	117338275	117338475	+	835.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	ID_B1|SINE|B4	-10795.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.50420580836411	3.90776871488809	3.92134988624925	4.15997795852558	3.8450793028204	3.8734887816628	4.09898587780003	4.11468882565578	-0.420138297355359	0.349831038783842	0.657320719856267
Merged-chr2-84734014-4	chr2	84733919	84734119	+	965.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005342)	promoter-TSS (NM_001005342)	-185.0	NM_001005342	241525.0	Mm.486398	NM_001005342	ENSMUSG00000034059	Ypel4	-	yippee like 4	protein-coding	4.04114803786749	4.24690664390988	4.15171741248908	4.11572203126534	4.56114230193489	4.9072181083125	4.68120365196819	4.70113534297634	1.30894447530449	0.000424514896076276	0.00674928429479859
Merged-chr14-54765625-3	chr14	54765564	54765764	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	16222.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	2.67193900357585	2.73287662101927	2.9000859530983	3.10778204729606	2.26449367207936	2.42009648826576	2.31279966969757	2.3952036083922	-3.75357038771511	0.000196138933958738	0.00357829749606576
Merged-chr15-50854602-4	chr15	50854495	50854695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	34454.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	6.26492579595329	6.01940928738954	6.47003974424774	6.71327496461711	6.09717662761169	6.05898613943693	6.17750241020586	5.59856470266647	-0.610626635469884	0.0270921431943028	0.156576133519591
Merged-chr4-137864960-4	chr4	137864861	137865061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	2724.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	8.09752904384758	7.16013936876422	8.19958894056024	8.38981889125867	7.04179467787601	6.9109125627904	7.5146519259058	7.13427323604975	-1.14941920361484	2.44416981934298e-05	0.000607449593474211
Merged-chr6-87542143-4	chr6	87542058	87542258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8899.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	7.87680330190995	7.89315822906619	8.12694783039266	8.07748468390445	7.92223655189483	7.89705379246711	8.04509848622492	8.07819726578844	-0.0186628725547143	0.909648668356308	0.966429579905572
Merged-chr4-105317023-4	chr4	105316914	105317114	+	940.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	159667.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.52686723164144	4.82819468227547	4.39544978320183	4.36276398540303	4.58383445476945	4.7010027079379	4.73391425653035	4.52469248064899	0.223463487497378	0.541824487496946	0.793491190310592
Merged-chr14-66264905-4	chr14	66264923	66265123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	16029.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	5.98319582227416	6.15600483407478	5.79079048838995	5.66989087124568	6.05416780284151	6.34635478503504	6.31875712456745	6.26022066669227	0.531713032552039	0.0345653038260138	0.183976950649206
Merged-chr10-82670430-4	chr10	82670330	82670530	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029102, intron 2 of 9)	intron (NM_029102, intron 2 of 9)	20220.0	NM_029102	74782.0	Mm.191281	NM_029102	ENSMUSG00000020251	Glt8d2	1110021D20Rik	glycosyltransferase 8 domain containing 2	protein-coding	5.46628577131817	5.18720633873446	5.43866741451704	5.63717716718268	5.64216786324357	5.17721749854283	5.94102302463329	5.40567616665722	0.216985708713634	0.486560540658474	0.760260190620571
Merged-chr2-79254985-7	chr2	79254917	79255117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010576)	promoter-TSS (NM_010576)	-409.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	7.85859145845808	7.83567255542135	8.15011939049047	7.58677918839884	8.10641308263917	7.8794014585054	7.96188415893508	7.67100637327788	0.0703479993153071	0.719707379421285	0.888022825078143
Merged-chr15-7085290-4	chr15	7085180	7085380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44292.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	6.52328609206912	6.45885997758158	6.22682636734057	6.84967954011382	6.67694519277069	6.63293186325965	6.67483953672161	6.51977973422164	0.106622995736837	0.647880327197475	0.851860604222574
Merged-chr7-25811546-6	chr7	25811409	25811609	+	792.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028775, intron 3 of 8)	intron (NM_028775, intron 3 of 8)	5021.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	3.70223112732256	3.56922610038088	3.99852775876543	3.97298543606944	3.54330874491361	4.02938847716221	3.68824866839719	3.95129141116854	-0.0527551487015833	0.913791212487959	0.967694418307962
Merged-chr14-74689785-3	chr14	74689685	74689885	+	873.138855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172812, intron 2 of 2)	intron (NM_172812, intron 2 of 2)	-42512.0	NM_001285423	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	4.16884855555894	4.04421999895564	4.53208387016911	4.32874705938887	4.19148573329365	4.09119554038454	4.28277019453216	4.01905240163009	-0.323392747347427	0.432769917213963	0.722611204268057
Merged-chr7-130858163-4	chr7	130858065	130858265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7559.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	7.50071811474369	7.48818071181648	7.91145456904729	7.63011385880975	7.88763719404057	7.48508276371335	7.93324111463572	7.36686908601212	0.0720913196367054	0.731306047424876	0.893547904036653
Merged-chr16-24282678-4	chr16	24282576	24282776	+	994.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110674.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	4.54497224624587	4.86318230043043	4.83228854998376	5.08719448185699	4.77250038373866	4.85187126256832	5.04114715152368	4.7918864294138	-0.000237550746686463	0.999452798298572	0.999747754716182
Merged-chr16-5203944-4	chr16	5203842	5204042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013796)	promoter-TSS (NM_013796)	70.0	NM_013796	27426.0	Mm.215641	NM_013796	ENSMUSG00000023143	Nagpa	AI596180|UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	protein-coding	6.13877366171261	5.63813304781961	5.96114331077592	5.87261127480787	5.66802329074707	5.97724115520521	5.74826035637123	5.74854762806287	-0.201965457402093	0.440316590602927	0.727741310566664
Merged-chr7-132564992-4	chr7	132564880	132565080	+	906.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016978, intron 4 of 9)	intron (NM_016978, intron 4 of 9)	11418.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	3.96536245203504	3.81718058538519	4.20582879624665	4.33032403988874	4.37009550387753	4.19197732760015	4.42284330138817	3.67097408516014	0.241111143563534	0.612517245730864	0.832792730628766
Merged-chr9-113932235-4	chr9	113932130	113932330	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013699, intron 2 of 15)	intron (NM_013699, intron 2 of 15)	1296.0	NM_013699	22221.0	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	4.7958237217338	4.9913677806644	5.01622091060652	5.19352828483714	5.06260380038829	4.8494905681977	5.05692453827363	5.01283038544102	-0.0406054766085776	0.899089556539139	0.962393017588858
Merged-chr5-145204441-4	chr5	145204322	145204522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167944)	promoter-TSS (NM_001167944)	-137.0	NM_001359187	22757.0	Mm.332842	NM_016683	ENSMUSG00000055991	Zkscan5	AI132486|AI326970|Zfp95|hKraba1	zinc finger with KRAB and SCAN domains 5	protein-coding	8.06926160994163	8.10686053738326	7.89157724743083	7.91051146525609	7.81264610552179	8.18902053853057	8.06370481920548	8.08430375747643	0.0552390214748864	0.746826405748362	0.900253617240193
Merged-chr5-77265600-3	chr5	77265502	77265702	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011263, exon 1 of 4)	5' UTR (NM_011263, exon 1 of 4)	108.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	5.3531037829728	4.86488304922545	6.00239226565623	5.10511046089533	4.96717377711917	5.40784211904057	5.51564087278701	5.1949139031418	-0.201144685335244	0.593899377251256	0.823203843538073
Merged-chr9-106200102-4	chr9	106200012	106200212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026447)	promoter-TSS (NM_026447)	-879.0	NM_026447	67905.0	Mm.23018	NM_026447	ENSMUSG00000020253	Ppm1m	2810423O19Rik|AW610647|C77250|PP2Ceta	protein phosphatase 1M	protein-coding	6.00695018737385	5.98903352051566	5.9624352882853	5.85943412210235	6.35090510095183	6.51469485116529	6.29081038210801	6.11088200028515	0.579574863560916	0.0124912656919278	0.0923852660729145
Merged-chr13-9094822-1	chr13	9094722	9094922	+	969.0	f0_balb.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	941.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	4.53225441132348	4.80997982084321	4.97201888230558	4.88004901592191	5.14063454686605	4.92681962134146	4.87903761118557	5.15647690099538	0.439627335389867	0.182362485077589	0.478839432098926
Merged-chr11-82100417-4	chr11	82100322	82100522	+	964.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1423.0	NM_011331	20293.0	Mm.867	NM_011331	ENSMUSG00000035352	Ccl12	MCP-5|Scya12	chemokine (C-C motif) ligand 12	protein-coding	4.78977204134061	5.38518850530894	5.36429266245913	5.1441023936211	5.22020283668892	5.16345736508776	5.25376663268482	4.86968105617375	-0.098818457618092	0.761551739579406	0.906556667566817
Merged-chr1-136116370-4	chr1	136116260	136116460	+	847.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081023, intron 40 of 43)	intron (NM_001081023, intron 40 of 43)	14823.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	4.04819201578934	4.0899176711846	3.77953503155574	4.19672515155573	3.89740259773571	4.22131593128207	4.12435190040276	4.38562292939963	0.291827823341148	0.504240748632273	0.77063065759644
Merged-chr15-102296215-4	chr15	102296107	102296307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014976)	promoter-TSS (NM_001014976)	-86.0	NM_001014976	105988.0	Mm.288324	NM_001014976	ENSMUSG00000058290	Espl1	AL024103|AU045071|Cerp|ESP1|PRCE|SSE	extra spindle pole bodies 1, separase	protein-coding	6.40136754774201	6.06619486069136	5.59981683747034	6.04154260916089	6.39159275162138	6.40074737786209	6.19359917949699	6.23992571484595	0.388117426569598	0.13196957095575	0.404407457094184
Merged-chr15-97098819-2	chr15	97098719	97098919	+	707.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42863.0	NM_027052	69354.0	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	2.80616703788353	2.96067416677527	2.94409473307439	2.8726982476491	2.87369773591339	3.11948323856005	3.45664106517797	3.12541306790969	1.05859817884626	0.0779980350448023	0.30203225915491
Merged-chr7-47022706-4	chr7	47022606	47022806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-14292.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	7.90855295758757	8.11456708412857	8.34549279984501	8.10943601828796	7.85649430991108	7.91714475298962	7.6935232395043	7.80670814369129	-0.396279041072267	0.0216535068484321	0.134939149357779
Merged-chr9-44582648-4	chr9	44582553	44582753	+	975.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22239.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	5.98297741580788	6.01199428520274	5.26086708445475	5.74184382032814	6.30335586325516	6.39953642189245	6.09869025106025	6.30883819480877	0.776535792646563	0.00402456325012796	0.040248519958302
Merged-chr11-47032550-4	chr11	47032478	47032678	+	969.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 6 of 7)	L2|LINE|L2	221779.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	4.53397857684061	4.34644276878849	4.69614166742584	4.94082567786658	4.84058038280576	4.62218060315314	4.63599074629104	4.73036728280699	0.1013945316911	0.785307512694825	0.916471069092749
Merged-chr12-32146677-4	chr12	32146580	32146780	+	803.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61658.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	3.88530333440778	3.74426173010283	4.04124144998733	4.3255958966968	3.89011125059039	4.30611017896413	4.11707433288997	4.34125501788971	0.347337633942631	0.451031519667217	0.735725036249989
Merged-chr7-105751641-4	chr7	105751554	105751754	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009906, exon 3 of 13)	exon (NM_009906, exon 3 of 13)	581.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	5.00581053713684	4.86884667204233	4.62580138891994	5.00438032276951	4.89362528857794	5.14524475358217	5.10641318876807	4.66637157812184	0.136331570131384	0.687418288952934	0.872252468458984
Merged-chr13-99218640-3	chr13	99218536	99218736	+	976.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	33813.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	4.34250457208927	3.74404225795394	4.34321688618634	4.45802839458104	4.22766881012562	3.83009883043169	3.87007511846272	3.82727104374848	-0.764738320830164	0.110036133415623	0.366324137378052
Merged-chr9-45269154-4	chr9	45269055	45269255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008348)	promoter-TSS (NM_008348)	-6.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	6.60923234716749	7.27484945869934	6.38647673441694	6.31380082953839	6.68309792899634	6.78726928795807	6.90617447037865	6.13337492025431	-0.0659818890632517	0.824466144259872	0.932696938095671
Merged-chr15-88921641-4	chr15	88921500	88921700	+	767.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357736, intron 8 of 11)	intron (NM_001357736, intron 8 of 11)	32818.0	NM_001357736	239591.0	Mm.86807	NM_172818	ENSMUSG00000022388	Ttll8	1700019P01Rik|4933401B17	tubulin tyrosine ligase-like family, member 8	protein-coding	3.57530988102695	3.34441175859689	3.29004791381592	3.469382941766	3.2986546601905	3.40360078770366	3.70423730531271	3.71866457257795	0.377197104781494	0.467792765833086	0.747139552107733
Merged-chr1-165658795-4	chr1	165658698	165658898	+	859.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 3 of 5)	intron (NM_001038846, intron 3 of 5)	-24257.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	3.88139419965303	3.64057658377691	3.93167629862637	3.89842955318092	4.24393291405209	3.65346632412171	3.91500591091528	4.15201757131001	0.482233679041994	0.295748413580432	0.60765742950211
Merged-chr13-5801959-2	chr13	5801859	5802059	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	56133.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	3.53267457178509	3.25698312532124	3.31214037307837	3.36750464446052	3.50091912955869	3.59586568388704	3.35853406508822	3.42554470582488	0.357436437574531	0.480116482477189	0.755678709554239
Merged-chr16-76370249-4	chr16	76370152	76370352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	2797.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	6.01056691983345	5.87601039175546	5.47072559301055	5.83061302186771	6.08562294422384	5.88169651093044	6.08098172763183	6.10794234958054	0.366919346588649	0.148180263049377	0.429853810310617
Merged-chr11-115071126-3	chr11	115071031	115071231	+	929.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-9092.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	3.46205635579758	3.57248226270877	3.34296372911694	3.8449164514688	3.75561328932514	3.51706734264627	3.44979053096766	3.40242726700552	-0.124624193264231	0.814365184219037	0.928327532350968
Merged-chr7-118102444-2	chr7	118102345	118102545	+	932.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13702.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	2.76081539658902	2.79514380275644	2.61716277168228	2.75242546912218	2.87236829213438	3.06168287863485	3.10396917285951	3.00771599751064	1.21767173955156	0.0461513108216463	0.220603327712978
Merged-chr13-23763654-4	chr13	23763552	23763752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030609)	promoter-TSS (NM_030609)	-16.0	NM_030609	80838.0	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding	6.67960029511783	6.49876560817083	6.22029896103685	6.16816784385421	6.78583218817946	6.98331222023739	6.95870588121817	6.64599000732186	0.651983981669967	0.00438738557564859	0.0430982221762477
Merged-chr18-34118648-1	chr18	34118548	34118748	+	591.0	f1_c57bl6.idr	Intergenic	MER5B|DNA|hAT-Charlie	-102336.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	3.10780133925639	3.050797536874	3.04849562125481	2.9400878265394	3.05224871261605	2.95844325231372	3.30784550101833	3.10657284195258	0.325829532615712	0.566660714995845	0.807951645949796
Merged-chr2-128751123-4	chr2	128751050	128751250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 5 of 18)	(A)n|Simple_repeat|Simple_repeat	52235.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	5.78405751141891	6.1215267690659	5.70885836426873	5.80751158498742	5.82744191943028	5.88508559696346	5.78002450138637	5.98522789994236	0.00539977170546745	0.983032115223395	0.993940447455246
Merged-chr15-99225555-2	chr15	99225455	99225655	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010601, intron 1 of 14)	intron (NM_010601, intron 1 of 14)	579.0	NM_010601	16512.0	Mm.374793	NM_010601	ENSMUSG00000037579	Kcnh3	AU019351|C030044P22Rik|Elk2|Kv12.2|Melk2	potassium voltage-gated channel, subfamily H (eag-related), member 3	protein-coding	3.11903902984137	3.15569442087932	3.33555787597065	2.91117434812067	2.99487078144549	3.03909594069022	3.27080620790361	2.85903225186434	-0.333605048719653	0.579252290760356	0.815292704330909
Merged-chr13-100183320-4	chr13	100183213	100183413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 5 of 15)	intron (NM_001126182, intron 5 of 15)	18809.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	7.27117629475245	7.33034283229638	7.54401507061939	7.10977630326248	7.09878799046117	7.04650792918109	7.04492963788583	7.09973193573963	-0.325206191501294	0.0923999192448599	0.332518362371277
Merged-chr2-19658585-6	chr2	19658521	19658721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033642)	promoter-TSS (NR_033642)	559.0	NM_027715	71198.0	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding	5.44925243121591	5.1421335276047	5.89386377932309	5.52400746718511	5.54540056579723	5.86499451325916	5.71010532486175	5.5040534802984	0.226372054961439	0.447579735730876	0.733082010437389
Merged-chr9-78073943-4	chr9	78073835	78074035	+	813.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	21977.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	3.5906114208673	3.68426254546299	3.53465353068864	3.81723378161886	3.50781374181091	3.81547452983113	3.86813830057334	3.34785206632391	-0.066588794952786	0.895200758845904	0.960764192429517
Merged-chr3-142590607-4	chr3	142590457	142590657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-4290.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	6.99882539771904	7.08259137231084	7.12602867057631	6.97994352873465	6.68220852556848	6.57092926163864	6.66793781358795	6.53448973502213	-0.599110474218683	0.00217359245025815	0.0249257510902086
Merged-chr2-160569710-4	chr2	160569578	160569778	+	959.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76219.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	3.5553392721135	3.67710250700453	3.77633526191329	3.70245644084856	3.80290943031546	3.78868189842082	3.80985800816196	3.96198655771609	0.471637968009452	0.293789728008745	0.606204004660023
Merged-chr5-124498413-4	chr5	124498333	124498533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021430, intron 6 of 6)	intron (NM_021430, intron 6 of 6)	15278.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	6.28542611754611	6.31352912856436	6.64160605036708	6.54069177444454	5.94416018371501	6.17199719105573	6.09630862250287	6.28203759655876	-0.509401806266288	0.0297717769517526	0.166414740980744
Merged-chr15-75921601-4	chr15	75921485	75921685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025412)	promoter-TSS (NM_025412)	-25.0	NM_025412	66194.0	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding	7.0628611177155	7.27354326199772	7.02673700673024	6.99645602851252	7.24974278912368	7.17808477309722	7.22125369397919	7.41004037654829	0.241380465383997	0.197578379296277	0.49895982014778
Merged-chr17-83632035-4	chr17	83631940	83632140	+	858.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153512)	promoter-TSS (NM_153512)	-145.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	3.96366091558352	4.14614123808205	3.86350768441844	3.9624088791979	4.09262281921779	3.92986922019939	3.74025642870207	4.00936651986994	-0.088749367064126	0.838502382744121	0.938734869008585
Merged-chr1-156473199-4	chr1	156473044	156473244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	1184.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	5.42410985650934	5.31226017531032	5.05770493522638	5.19258554170077	5.2503981365356	5.42781520215139	4.80307154649684	5.28104048425189	-0.0744177883684249	0.813612595294974	0.927989791374242
Merged-chr1-46921749-4	chr1	46921634	46921834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356417, intron 1 of 10)	intron (NM_001356417, intron 1 of 10)	4042.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	6.9909897178828	7.19419117648219	6.82146266844564	7.09347555290689	7.01926500346426	6.83394097395595	6.78679686069136	6.34486824558701	-0.362277516406437	0.110184030557697	0.366573710612399
Merged-chr9-106362153-1	chr9	106362053	106362253	+	562.0	f0_c57.idr	Intergenic	RSINE1|SINE|B4	-6479.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	2.42394179041796	2.43378795410919	2.34098571033421	2.08436367444853	3.23388992808476	2.89404923777949	2.88688921145021	2.89813988885121	4.54493779861205	2.19531189872565e-07	8.77372855920229e-06
Merged-chr10-10466675-3	chr10	10466591	10466791	+	792.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	LTR101_Mam|LTR|ERVL	5623.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	2.85385142888012	2.85730356727065	2.93557011358577	2.82899144979714	3.77852249629558	3.73966738862586	3.5494805867592	3.91373629062777	3.35826547169605	8.02863814982228e-08	3.49737108241248e-06
Merged-chr13-117602404-4	chr13	117602318	117602518	+	848.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010408)	promoter-TSS (NM_010408)	98.0	NM_010408	15165.0	Mm.343429	NM_010408	ENSMUSG00000021730	Hcn1	Bcng1|C630013B14Rik|HAC2	hyperpolarization-activated, cyclic nucleotide-gated K+ 1	protein-coding	4.0960658761866	4.07390447546168	4.14835424887126	4.70622515912993	4.16250538220297	4.16916512081093	4.92437771635212	4.37733168620739	0.337002618605769	0.472579847779517	0.750725578260053
Merged-chr2-60288808-4	chr2	60288705	60288905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4321.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	6.30405068491015	6.16526335799663	6.37471000304988	6.21614657113965	6.04099869523596	5.8486974724549	6.21834211362289	6.30065265118362	-0.22806957149566	0.334673237587239	0.645157506515558
Merged-chr5-99336056-1	chr5	99335956	99336156	+	675.0	f0_c57.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-83129.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.72153755401241	4.06655531910707	3.82860857223156	3.5834263729488	3.94854075081335	3.72482153436086	3.59303367094894	4.21851511223844	0.252737516894027	0.604883717574942	0.828616820075694
Merged-chr10-7264973-3	chr10	7264876	7265076	+	959.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52739.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	4.60057146207535	4.6243540590837	5.25058584489014	5.34235162887771	3.22857852486067	3.51244451632113	3.52993348796227	3.61642789426451	-5.39230915847598	1.89508886067412e-11	1.63123629262056e-09
Merged-chr1-35971610-4	chr1	35971517	35971717	+	952.0125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-96783.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	5.14928558712328	4.43319721118469	5.37466612387582	5.42852397551614	4.74424861211946	4.71518068446977	4.99628189428366	5.20652812534229	-0.440033890543869	0.261329308906717	0.573242900510685
Merged-chr17-67383836-2	chr17	67383734	67383934	+	764.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29343.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	2.99203215525807	2.65756462659424	2.65407238367625	2.76109747630101	2.90956593589358	3.16342208676414	3.24585213542582	2.99081406696883	1.33026533331189	0.0325145081881327	0.176581432967055
Merged-chr1-185332123-4	chr1	185332037	185332237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011794)	promoter-TSS (NM_011794)	-22.0	NM_011794	23827.0	Mm.227549	NM_011794	ENSMUSG00000026617	Bpnt1	BPntase	bisphosphate 3'-nucleotidase 1	protein-coding	7.73047637864577	7.76012736119743	7.62164215305001	7.82185829171429	7.94504554663249	7.85956679773127	7.85335595211975	7.80506153472134	0.166538827756904	0.305064444634271	0.617546843314453
Merged-chr11-11462050-4	chr11	11461933	11462133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001185153, intron 1 of 7)	CpG	386.0	NM_015785	53604.0	Mm.9500	NM_015785	ENSMUSG00000020193	Zpbp	4930486K01Rik|Iam38|Sp38	zona pellucida binding protein	protein-coding	7.04617999503685	7.08775489132144	7.19611103711751	7.278350398832	7.60566435508617	7.85292685769504	7.72273815201265	7.76272450712225	0.759013233424269	2.18623554947606e-05	0.000551236486631799
Merged-chr2-180171440-4	chr2	180171340	180171540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019822)	promoter-TSS (NM_019822)	-148.0	NM_019822	56436.0	Mm.316654	NM_019822	ENSMUSG00000039041	Adrm1	1110063P18Rik|2510006J17Rik|AA408205|ARM-1|AU043535|Arm1|Gp110|Rpn13	adhesion regulating molecule 1	protein-coding	9.12560229024573	9.25812306947312	9.30370238868962	9.2016651509986	9.1385950036229	9.22013993487246	9.23468745400317	9.04733014718428	-0.0765119437994934	0.581775612084791	0.816420227529328
Merged-chr1-62725153-3	chr1	62725002	62725202	+	931.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	21785.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	4.44926724072355	4.54453606642947	4.62264053404515	3.74779093974615	3.71428902366431	4.13990905047725	3.94316380751862	3.78507682836616	-1.23936913895602	0.0122694762446678	0.0913333036623312
Merged-chr2-30784589-6	chr2	30784470	30784670	+	959.522217	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17167.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	4.56290436960863	4.97079277331842	4.56364247626436	3.91891032132947	4.53895607267396	4.85391246209435	4.65886661940261	4.51894898241378	0.206936045717414	0.631506484913309	0.843434534650137
Merged-chr4-21767177-4	chr4	21767072	21767272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029840)	promoter-TSS (NM_029840)	39.0	NM_029840	77032.0	Mm.87238	NM_029840	ENSMUSG00000028251	Tstd3	2610029I01Rik	thiosulfate sulfurtransferase (rhodanese)-like domain containing 3	protein-coding	6.00533705896827	6.09993021432966	5.66663949420759	5.94644501390025	6.17794738959968	5.97502263106048	5.93269712569764	5.86758759762065	0.0943095520742477	0.707301422567689	0.882425252956822
Merged-chr7-143038308-4	chr7	143038190	143038390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015529, intron 2 of 3)	ERVL-B4-int|LTR|ERVL	-14460.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	5.28785352983162	5.24306705119797	5.55221493048129	5.58079499543787	5.70013316725544	5.33093226701489	5.8461796042305	5.40884868546979	0.276463694518488	0.347886142582364	0.655743544909435
Merged-chr2-145832087-4	chr2	145831988	145832188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	45972.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	5.80703993956522	5.23575879302239	6.18931092492036	6.07626900953263	5.51178351930162	5.54361096610659	5.88984682613947	5.68090972953907	-0.357373625185661	0.255390740613767	0.566907550868438
Merged-chr1-131438726-4	chr1	131438627	131438827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	88634.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	6.07824196231811	6.30804459046217	5.96857992187645	6.37555148148992	6.03057230151912	5.94761785009339	6.36346634628828	6.13699164098209	-0.123734061987903	0.617773522887845	0.835709021526007
Merged-chr8-4252296-3	chr8	4252148	4252348	+	601.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133968)	promoter-TSS (NM_133968)	-854.0	NM_133968	102209.0	Mm.28452	NM_133968	ENSMUSG00000011837	Snapc2	0610007H10Rik|AU015675	small nuclear RNA activating complex, polypeptide 2	protein-coding	3.73459854599559	3.78832287185311	3.52208503920504	3.55631234456875	3.39897155449767	3.63846631594499	3.81257719987001	3.57678066442124	-0.132373492259108	0.787210019807561	0.917442848954275
Merged-chr1-64118367-4	chr1	64118277	64118477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	3012.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	6.45713316134317	6.96923024581018	6.76769307681932	6.20424062033539	6.06725215944878	6.47502666516077	6.0388563585154	5.99568978800754	-0.700375916462092	0.0101413914378978	0.0797188405475565
Merged-chr8-83736820-4	chr8	83736710	83736910	+	939.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	intron (NM_011925, intron 1 of 19)	4501.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	4.65244593307429	4.57346057633877	4.60508234087417	4.33171482852745	5.81700883615236	5.33835541133058	5.28505136118143	6.0629010072395	2.14869290518569	2.19467258638671e-10	1.5924016312581e-08
Merged-chr16-18687580-4	chr16	18687469	18687669	+	968.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57631.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	5.29135794591749	5.84883211171928	5.16958765499686	5.47599621753404	4.87652196278911	4.93839385347468	4.93647135340098	4.83823232925673	-1.09426673402104	0.000803368569679491	0.0112831435322053
Merged-chr13-17976053-4	chr13	17975946	17976146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17305.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	8.55806941696103	8.67950605407139	8.85183344021175	8.76460632387689	8.46901193932636	8.74680143092992	8.62516302559722	8.40717384297908	-0.192104500948998	0.231055409984798	0.5405874840518
Merged-chr1-149843594-1	chr1	149843494	149843694	+	558.0	f0_c57.idr	intron (NM_008869, intron 15 of 17)	MTD|LTR|ERVL-MaLR	78845.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	3.54829202959834	3.36837881808803	3.2494853486845	3.27559622729443	3.6914366128754	3.6659935347109	3.58617343755433	3.69779289944943	1.00289645954926	0.039884224309643	0.201384635180257
Merged-chr10-56378058-3	chr10	56377987	56378187	+	867.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010288, intron 1 of 1)	intron (NM_010288, intron 1 of 1)	787.0	NM_010288	14609.0	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	3.43840156522978	3.43422948733206	3.43889960142843	3.48035990386924	3.10615927176221	3.26511039802173	3.01220640901098	3.15287049747558	-1.21089629297017	0.0283795836121536	0.161473251952796
Merged-chr5-135489252-4	chr5	135489156	135489356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	CpG	55866.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	6.5752165485141	6.80487134553439	6.62279687207728	6.3509816412302	6.83107600364031	6.23715343546504	6.42783350273647	6.40336084590442	-0.119007250252383	0.626557327442427	0.840610020168593
Merged-chr1-191026270-4	chr1	191026174	191026374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198025)	promoter-TSS (NM_198025)	-84.0	NM_198025	226844.0	Mm.134053	NM_198025	ENSMUSG00000066595	Flvcr1	9630055N22Rik|FLVCR|Mfsd7b	feline leukemia virus subgroup C cellular receptor 1	protein-coding	8.41816722120983	8.55725825831393	8.39338212687045	8.60943800542307	8.38296161537106	8.38328312745	8.45063841820368	8.18788856145558	-0.186454659671005	0.232910096910224	0.542519398781754
Merged-chr2-119547097-4	chr2	119547023	119547223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019769)	promoter-TSS (NM_019769)	504.0	NM_172857	241624.0	Mm.212773	NM_172857	ENSMUSG00000048647	Exd1	4932702D22Rik|Exdl1|mExd1	exonuclease 3'-5' domain containing 1	protein-coding	7.63184916725987	8.10037039082466	7.4110160381982	7.416938832794	7.57365153098265	7.60868665316651	7.66957633424414	7.39571959424247	-0.137929403983985	0.522295321287294	0.781954413350194
Merged-chr15-64186038-4	chr15	64185963	64186163	+	965.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	-125615.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.94243407929058	4.96816891777644	5.37313233802808	5.15850574293257	5.07580902824718	4.83890949006784	5.15092130026161	4.97596743659648	-0.196807329149822	0.537054766287216	0.790923655782789
Merged-chr6-134983703-4	chr6	134983601	134983801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001109914, exon 2 of 2)	exon (NM_001109914, exon 2 of 2)	1700.0	NM_001109914	381823.0	Mm.296104	NM_001109914	ENSMUSG00000090698	Apold1	Gm1075	apolipoprotein L domain containing 1	protein-coding	6.63605155565077	6.85659907519872	6.32942828495573	6.70297555976027	6.47099670869091	6.40708295360743	6.60336232068247	6.60180205328113	-0.188423873033011	0.394694416146742	0.693696530342229
Merged-chr6-145305782-3	chr6	145305682	145305882	+	845.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	55230.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	3.23766625625092	3.18341255934199	3.23806929780875	3.10249415518071	3.38120007941028	3.52796386891278	3.16398923515148	3.74077308437577	1.00311621214078	0.0619027840809085	0.2632125608181
Merged-chr6-15728466-4	chr6	15728377	15728577	+	847.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	7816.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	4.3507685889285	4.17443665021201	4.39542224659242	4.79095993672339	4.57830085164407	4.43382068407421	4.19213322945031	4.51603014369282	-0.0603326329453294	0.883056481152531	0.95594167891404
Merged-chr2-32447366-4	chr2	32447245	32447445	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146118, intron 1 of 10)	intron (NM_146118, intron 1 of 10)	-3112.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	4.39983536790861	4.27598975448234	3.56446605284333	4.01767606080332	4.34075569692216	4.27145010321262	4.34092941868822	4.14266579986625	0.445046341607231	0.330530009835242	0.641871774561785
Merged-chr11-94392558-1	chr11	94392458	94392658	+	983.6666869999999	f0_c57.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	418.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	4.82772790930573	4.61433766953011	4.64132611998051	4.53971801387362	4.79510363088318	4.77463808115209	4.73437537556263	4.75377311626745	0.250356766396753	0.456616602249943	0.739948846451796
Merged-chr14-14870667-4	chr14	14870546	14870746	+	987.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195229, intron 21 of 34)	intron (NM_001195229, intron 21 of 34)	49831.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	5.49582065910506	4.74651231459442	4.96476150277551	5.63191883837077	5.06133970908178	5.41739256972743	5.3065669739707	5.44076276645358	0.0603435111322826	0.866217755154469	0.949874431032359
Merged-chr17-5527467-3	chr17	5527388	5527588	+	756.416687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	RLTR10D2|LTR|ERVK	34888.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	3.78070396620274	3.38489840074695	3.62583244225576	2.93362010103506	3.68984145147078	3.90477803186241	3.66394854864944	3.96043369094228	1.06960363643288	0.0574953354117984	0.251653525222539
Merged-chr3-90710221-4	chr3	90710127	90710327	+	927.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-14506.0	NM_001281852	20202.0	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	4.62579346931497	4.42196379621413	4.4673076004508	4.21669150925572	4.07377751372939	4.46385532457877	4.89981231304361	4.66028698088903	0.275088484254916	0.50662790763652	0.772371818579534
Merged-chr4-134289029-4	chr4	134288929	134289129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1183.0	NM_146156	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	6.13095125373202	5.98169959568508	6.22640811267291	6.07913114563457	5.80178834347912	6.02388059501623	5.95620317189473	5.96028151253942	-0.271999158307298	0.252041593154278	0.563391280944897
Merged-chr5-150593841-7	chr5	150593723	150593923	+	973.3214109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133898, intron 1 of 4)	CpG	702.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	4.93460187323035	4.50265106717041	4.97009592672251	4.48223445957794	5.02246397272235	5.20941067511163	4.76390961680116	5.37191295427321	0.761421253649241	0.0334284704908597	0.179794854244288
Merged-chr16-55756917-1	chr16	55756817	55757017	+	1000.0	f0_c57.idr	Intergenic	Intergenic	65221.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	3.82696314008972	4.34296396360965	4.06079639012444	3.62527901772889	4.6424257096849	4.64437624068746	4.66452663177854	4.42975712618545	1.50315521689969	0.000425816655823998	0.0067680254141306
Merged-chr4-132382515-4	chr4	132382407	132382607	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161797, intron 3 of 12)	intron (NM_001161797, intron 3 of 12)	-28821.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	5.65410843539241	5.34385430265085	5.58251935268086	5.5653118843812	5.55661743953725	5.35140302852275	4.96645377992926	5.1001558004935	-0.464883438145603	0.130187391320273	0.401586493035134
Merged-chr18-46742443-4	chr18	46742364	46742564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026217)	promoter-TSS (NM_026217)	588.0	NM_009681	11777.0	Mm.312536	NM_009681	ENSMUSG00000024480	Ap3s1	-	adaptor-related protein complex 3, sigma 1 subunit	protein-coding	4.81291825145173	4.97127234105585	5.34680547059347	5.03877152281677	4.70331764677344	5.02708824757004	4.90200414787053	4.84889830272131	-0.371950314047874	0.263775160097988	0.575839660193672
Merged-chr15-5349095-4	chr15	5349000	5349200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104913.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	5.97419093772327	6.23734625257597	6.01851798827187	6.04084225696801	5.97712954926794	5.9624927839952	6.00876078053958	5.70251245033285	-0.238741445103052	0.326281126918192	0.637829440170333
Merged-chr6-108574078-2	chr6	108573986	108574186	+	770.75	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	49081.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	3.837447319707	3.70873024136495	3.74796119611782	4.20700557754826	3.08001996689996	3.13266058518989	3.16056408925373	3.16880990665057	-2.97619370539549	2.1370255262447e-06	6.93306016101055e-05
Merged-chr6-92941491-3	chr6	92941391	92941591	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	909.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	7.31267244081122	7.47312968105582	7.8012558232152	7.67825753410487	4.00645103797611	4.5466773833903	4.36614858331349	4.69802234473772	-6.62101867336572	7.78584676330171e-37	1.84729595588351e-33
Merged-chr3-21825096-4	chr3	21824995	21825195	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-251557.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.35625445713395	4.13562249636792	4.1358024638019	4.59785343052104	4.1082755605824	4.21099859619088	4.25395433470339	4.03319714804507	-0.462652168761053	0.266874041640846	0.578488516306416
Merged-chr7-118243239-2	chr7	118243139	118243339	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027879)	promoter-TSS (NR_027879)	398.0	NM_001031814	233789.0	Mm.309053	NM_177180	ENSMUSG00000030655	Smg1	2610207I05Rik|5430435M13Rik|C130002K18Rik|mKIAA0421	SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	protein-coding	6.17249905169722	6.6551768888011	6.99437697371014	6.29352510312888	6.24682066972265	6.51154605080414	6.44392988555356	6.5057435004038	-0.198175852559736	0.44736828387973	0.732904324209982
Merged-chr1-40085962-4	chr1	40085861	40086061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037980)	promoter-TSS (NR_037980)	-110.0	NR_037980	100047133.0	Mm.447052	NR_037980	ENSMUSG00000097899	Gm16894	-	predicted gene, 16894	ncRNA	5.86859968649022	6.39520381088705	6.1391412719305	5.80846996661731	6.5582912050714	6.07227284698493	6.20444375872625	6.11436595509063	0.301571724762708	0.261996957721628	0.573982193095345
Merged-chr9-59732859-6	chr9	59732832	59733032	+	945.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17717.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	3.94473416030922	4.27676834332055	3.707464202785	4.31742781825228	4.5376780753442	4.27245364322703	4.17453870807885	4.14460895761199	0.489003034201249	0.280109629389433	0.592203034097152
Merged-chr14-79508093-3	chr14	79508021	79508221	+	771.883362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	ID4_|SINE|ID	-7553.0	NM_001286412	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	3.19219824427913	3.02400246632802	3.34378569276237	3.00925838999343	3.08916025891969	2.93020671237552	2.74346137590122	2.95679085336503	-0.848180824987493	0.172594273173619	0.466103417317033
Merged-chr12-84515710-3	chr12	84515635	84515835	+	889.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173756, intron 5 of 5)	intron (NM_173756, intron 5 of 5)	-54093.0	NM_007701	12677.0	Mm.4405	NM_007701	ENSMUSG00000021239	Vsx2	Chx10|Hox-10|Hox10|or	visual system homeobox 2	protein-coding	4.04139217511195	3.95534041958821	4.36259275405376	3.89651774366252	3.65353996558275	3.73250917450008	3.77567077088602	4.08430233557536	-0.700330903900809	0.132959601977112	0.406105758986762
Merged-chr4-86421601-3	chr4	86421514	86421714	+	858.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029967, intron 25 of 27)	Lx8|LINE|L1	136689.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	3.51627388639494	3.34560034630127	3.57288204221109	3.84504879036421	3.9955493424739	3.44528145595909	3.61222613875353	3.62467879288288	0.305600966954061	0.563968294296218	0.806551268713802
Merged-chr19-5424347-1	chr19	5424247	5424447	+	765.333313	f1_c57bl6.idr	promoter-TSS (NM_001256515)	promoter-TSS (NM_001256515)	632.0	NM_024176	66556.0	Mm.275446	NM_024176	ENSMUSG00000024914	Drap1	2310074H19Rik|NC2-alpha	Dr1 associated protein 1 (negative cofactor 2 alpha)	protein-coding	3.23212661448999	3.22871252455446	3.35083917277101	2.87309201743452	3.53597921771228	3.3465741462777	3.39219510455084	3.55702822501833	1.07182069794797	0.0522376971078563	0.238012229064147
Merged-chr6-92067349-4	chr6	92067213	92067413	+	869.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172731, intron 14 of 20)	intron (NM_172731, intron 14 of 20)	-24105.0	NM_011630	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	3.61105446433034	3.92794055261534	3.72572831094564	3.81791265507042	3.94876115779994	3.8441737678519	3.95641710704328	3.87804959927181	0.36514947123414	0.409904359903634	0.70525942551561
Merged-chr17-45625525-4	chr17	45625433	45625633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23431.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	6.16847704320111	6.93237621581028	6.50708029105856	5.85290238262793	6.71767229688954	6.71560690179013	6.52187493145751	6.3262052340046	0.23255304804638	0.425516291330318	0.716992238586874
Merged-chr4-84360187-2	chr4	84360087	84360287	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172870, intron 4 of 5)	intron (NM_172870, intron 4 of 5)	314899.0	NM_172870	242509.0	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	3.11950573403301	3.15287737596149	3.49848924290662	3.00608164678442	3.64959959755795	3.56096293068854	3.97333806509818	3.55024155735827	1.71016947718379	0.00143267793367701	0.0179789461638215
Merged-chr7-30954095-2	chr7	30953995	30954195	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011680, intron 7 of 9)	intron (NM_011680, intron 7 of 9)	2708.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	3.3651739977988	3.46438924050738	3.54313628977292	3.44038699719103	3.86992886296724	3.7144282820762	3.63422790595442	3.59532501413208	0.827655572467824	0.0829884538479629	0.312972086279758
Merged-chr4-148088073-4	chr4	148087956	148088156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301281)	promoter-TSS (NM_001301281)	8.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	6.88379155566092	7.02698984591632	6.43534561557656	6.94885164937167	7.52626541363872	7.52533322832187	7.15813066186129	7.32414768407426	0.740391717946346	0.000602549211740037	0.00896881019289922
Merged-chr8-67431536-3	chr8	67431439	67431639	+	859.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59219.0	NM_008673	17960.0	Mm.14125	NM_008673	ENSMUSG00000025588	Nat1	Nat-1	N-acetyl transferase 1	protein-coding	3.67228856443102	3.29963505456541	3.30576132267754	3.40743788166266	3.32183537468191	3.35591959750406	3.56300686319469	3.36333555345258	-0.085206316808677	0.870013721511713	0.95118203952818
Merged-chr8-83607524-2	chr8	83607424	83607624	+	858.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018808)	promoter-TSS (NM_018808)	-651.0	NM_018808	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	3.60469227720854	3.55390417726912	3.44042548362076	3.31811997779405	3.48218422894146	3.91735236671405	3.36840557960479	3.43861352090619	0.2927406770728	0.571148065860926	0.810384487101122
Merged-chr5-3596198-4	chr5	3596096	3596296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172991, exon 1 of 5)	exon (NM_172991, exon 1 of 5)	130.0	NM_001293806	71382.0	Mm.379196	NM_027777	ENSMUSG00000005907	Pex1	5430414H02Rik|E330005K07Rik|ZWS1	peroxisomal biogenesis factor 1	protein-coding	8.35284760956849	8.45660680257522	8.3706740217525	8.68375740548732	8.67760204066495	8.67855626347585	8.95969801432937	8.54406241900468	0.307256390554444	0.0724407339803499	0.289312674222164
Merged-chr13-30749225-4	chr13	30749133	30749333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013674)	promoter-TSS (NM_013674)	0.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	7.86348210750688	7.62778681958859	7.76608731438003	8.01101062853966	7.67432467121302	7.98206846012265	7.8767519284995	7.67093030227776	-0.0366086335055142	0.84075604276929	0.939409995734574
Merged-chr4-40781378-3	chr4	40781280	40781480	+	834.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23495.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	4.13483722336584	3.88420945525993	3.58295252713853	4.27937834808811	3.95572825272357	3.76188883795962	3.68863088812609	3.80998798828788	-0.550050961190261	0.259258791402639	0.571096665653079
Merged-chr17-49432545-4	chr17	49432442	49432642	+	890.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020042, intron 1 of 10)	intron (NM_020042, intron 1 of 10)	4178.0	NM_020042	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	4.29116543569731	4.52713068015594	5.17516475582714	4.77503846125051	4.13542798918712	4.31988401161704	4.68448681262469	4.01965716245116	-0.946757354144605	0.032460787278455	0.176416460081938
Merged-chr10-18022471-4	chr10	18022367	18022567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028440, intron 1 of 2)	intron (NM_028440, intron 1 of 2)	623.0	NM_001359560	73112.0	Mm.276041	NM_028440	ENSMUSG00000078453	Abracl	1700028I04Rik|3110003A17Rik	ABRA C-terminal like	protein-coding	5.80658150750061	5.68178531778312	5.70874934613912	5.69688565276647	5.93959449140658	5.80562273004599	6.07150992787071	5.67878005451742	0.269197199083995	0.285810552194347	0.597483312127858
Merged-chr10-80017595-4	chr10	80017499	80017699	+	935.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347074, intron 1 of 22)	intron (NM_001347074, intron 1 of 22)	684.0	NM_001347074	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	4.89282041003124	4.54625552170492	4.82586945528123	4.7134312030885	4.80979038347235	4.55014969450606	4.44652691759418	4.85692352345349	-0.129571779986245	0.715449857889444	0.886237956122529
Merged-chr9-57077027-4	chr9	57076928	57077128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152107)	promoter-TSS (NR_152107)	652.0	NM_011378	20466.0	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	7.3413873691823	7.61562674540212	7.43987106332184	7.03418848037126	7.20263757693622	7.56903339717312	7.15639084609858	7.04265680581166	-0.150469907858521	0.492413960042578	0.763456691756969
Merged-chr11-5512522-4	chr11	5512377	5512577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31B|LTR|ERV1	-8164.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	5.68976339725052	5.78359716100826	5.69076049849742	5.88025432823367	5.40210935909796	5.65126092421352	5.22515525287859	5.75896060694167	-0.426769982624705	0.123387426683539	0.389524913392336
Merged-chr2-35342762-3	chr2	35342675	35342875	+	904.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5766.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	3.42037774113753	3.68681811602081	3.42081209767856	3.71429271742279	3.64723313917694	3.41269196209226	3.22682809343836	3.36063563095119	-0.487771225691765	0.360471186174177	0.665852975572007
Merged-chr6-91489072-4	chr6	91488966	91489166	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028766)	TTS (NM_028766)	15315.0	NM_028766	74122.0	Mm.38801	NM_028766	ENSMUSG00000030095	Tmem43	1200015A22Rik|LUMA	transmembrane protein 43	protein-coding	5.62615940913489	4.99943247863125	4.85309012944229	5.04657396971782	4.65937280789747	5.06644475779497	4.82992291583054	4.59859635554216	-0.720494774131785	0.0489680746548223	0.228832971574645
Merged-chr9-41162608-4	chr9	41162493	41162693	+	953.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-4531.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	4.6230766876673	5.12549020926822	4.62380423859291	4.45799176843847	5.47348909303724	5.00695165557465	5.27728501303561	4.74864065549595	0.857669927281049	0.0218852332135763	0.136014737994454
Merged-chr11-77100372-3	chr11	77100310	77100510	+	821.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176965, intron 17 of 17)	intron (NM_176965, intron 17 of 17)	-21973.0	NM_001012309	237859.0	Mm.156195	NM_001012309	ENSMUSG00000037958	Nsrp1	8030451K07|AI851076|AL022898|Ccdc55|NSpr70|NSrp70	nuclear speckle regulatory protein 1	protein-coding	2.68740964807353	3.12880593086339	2.9706221290791	3.1480883795656	3.00522126017305	3.07894696204777	3.19045765909957	3.20176105219817	0.461259414453133	0.457164486814764	0.740364738964964
Merged-chr2-60813199-1	chr2	60813099	60813299	+	557.0	f0_balb.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	68239.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	2.65267694902384	2.55018018818018	2.59558314545374	2.6279920016152	2.18935964990543	2.36291896336028	2.2567034340435	2.26113922025801	-2.30126288403722	0.00520654159404207	0.048955934494362
Merged-chr17-65771199-4	chr17	65771070	65771270	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	1582.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	5.17765705195594	5.14333776271973	5.14841835278102	4.93056032997077	4.96929317544598	4.71684452623949	4.77726422175911	5.17495001187105	-0.325833317447244	0.318931473933259	0.630823985405764
Merged-chr6-126955912-3	chr6	126955811	126956011	+	699.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_138594, exon 9 of 14)	exon (NM_138594, exon 9 of 14)	15945.0	NM_138594	28040.0	Mm.44228	NM_138594	ENSMUSG00000030347	D6Wsu163e	C12orf4	DNA segment, Chr 6, Wayne State University 163, expressed	protein-coding	3.4490428316501	3.48555961050723	3.67165982787696	3.43996248367514	4.01133992142631	3.5021752215353	3.75336879442635	3.56335957212947	0.702545910493901	0.155442894648977	0.441051847934254
Merged-chr18-80702652-4	chr18	80702543	80702743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	5530.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	7.43676607773123	6.95379808934103	7.73094096866497	7.46558334202389	6.86875148816427	7.0593622099162	6.81738723805891	7.1795959829295	-0.596965672253937	0.00826519496784988	0.0686874854193329
Merged-chr6-113625290-3	chr6	113625192	113625392	+	834.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009507, intron 1 of 2)	B1_Mm|SINE|Alu	1271.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	3.75968238519468	3.96564720026503	3.7083377781038	3.71938013247981	3.467639742653	3.7151953084252	3.79390518656645	3.75804510169269	-0.327956981616128	0.486638968908384	0.760308994317476
Merged-chr19-37608647-1	chr19	37608547	37608747	+	741.0	f0_balb.idr	intron (NM_175353, intron 17 of 21)	MTE2b|LTR|ERVL-MaLR	58229.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	3.29605858679762	3.16158181875988	3.24558761340733	3.55687655660451	2.67856554750105	2.77315910193314	2.73725355698639	2.8168961829296	-2.91644005969142	6.87910190150039e-05	0.00147974492066152
Merged-chr18-62972947-4	chr18	62972842	62973042	+	904.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4974.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	4.85594276379932	4.80282376432262	4.39829107932099	4.44489493356564	4.4174954124407	4.38029715195297	4.58868129399745	4.78845536590817	-0.183548198505639	0.630198156800526	0.842667104605937
Merged-chr1-135735516-4	chr1	135735419	135735619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007791, intron 1 of 5)	intron (NM_007791, intron 1 of 5)	6352.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	5.42153730131752	5.5354045543238	6.16006727614286	5.96600509193124	6.08871335210179	5.57014423903593	5.84862360836536	5.82857276732745	0.0709191046918745	0.812385729063981	0.927526808287139
Merged-chr2-118547796-8	chr2	118547688	118547888	+	922.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311140)	promoter-TSS (NM_001311140)	-189.0	NM_001311140	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	4.21567383572803	4.3628813642051	4.26065353566454	4.01424105242511	4.07108292195733	4.24806136504232	4.19770152952005	4.30076018838846	-0.0155117551514801	0.969320186824602	0.988938059225542
Merged-chr5-74277879-3	chr5	74277772	74277972	+	911.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 5 of 8)	MLT1I|LTR|ERVL-MaLR	82546.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	3.23372030241089	3.40896846986323	3.45478905570585	3.56398863193547	3.25599442474668	3.21714697806743	3.33629933578033	3.03876919939883	-0.772186851658034	0.161155716282395	0.449786406668417
Merged-chr4-48048990-3	chr4	48048879	48049079	+	871.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_015743, exon 2 of 8)	5' UTR (NM_015743, exon 2 of 8)	-2267.0	NM_001307989	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	3.75823957343108	3.38263294982996	3.29256260858386	3.09024745855908	3.20691905373018	3.4699785611867	3.21770995775947	3.75635123100211	0.109926042774691	0.849354275406721	0.943120119372541
Merged-chr11-6562518-4	chr11	6562360	6562560	+	954.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190344, intron 2 of 9)	intron (NM_001190344, intron 2 of 9)	2277.0	NM_001190344	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	5.42506821583901	4.9115474985721	5.42603294629597	5.60238756635031	4.51152680213132	4.80595326594254	4.5554497529871	4.79313895951604	-1.40425908258963	6.36539394541041e-05	0.00138776209060918
Merged-chr7-79232255-4	chr7	79232169	79232369	+	912.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3b|LINE|CR1	-40997.0	NM_018811	54608.0	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	4.29153778526898	4.3676362660176	4.85212793594377	4.41684052685424	4.67247700750353	4.69500102464167	4.4582369003331	4.81608013725571	0.380131166747531	0.310024839978417	0.622191278789402
Merged-chr5-146798223-4	chr5	146798125	146798325	+	979.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3269.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	5.2628187963989	4.82140528429595	5.90910026941245	6.12159152768245	5.39897239931308	5.47541871674767	5.65972383276339	5.4759190437042	-0.23104172167161	0.539870404025645	0.792406302070178
Merged-chr17-31002780-4	chr17	31002677	31002877	+	890.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177465, intron 19 of 21)	intron (NM_177465, intron 19 of 21)	48094.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	4.50401118998478	4.3767998948024	4.25188407040934	4.13722940754943	4.41585577858595	4.47024584171786	4.36464471476437	4.2019259138907	0.134910784669047	0.727454006882323	0.891505430861744
Merged-chr4-63496065-4	chr4	63495971	63496171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028640)	promoter-TSS (NM_028640)	-80.0	NM_001008791	73750.0	Mm.300397	NM_028640	ENSMUSG00000039137	Whrn	1110035G07Rik|AW122018|AW742671|C430046P22Rik|Dfnb31|Ush2d|wi	whirlin	protein-coding	6.70410400772868	6.52242108153557	6.13557642036696	6.77940053583765	6.79541914290772	6.85179358414489	6.71451784826399	7.05816350071429	0.408823707961084	0.0799875270656295	0.306345557654261
Merged-chr6-91473974-1	chr6	91473874	91474074	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_133928)	promoter-TSS (NM_133928)	223.0	NM_028766	74122.0	Mm.38801	NM_028766	ENSMUSG00000030095	Tmem43	1200015A22Rik|LUMA	transmembrane protein 43	protein-coding	4.75392887945625	4.85227286198788	5.2920663763396	4.65801531756349	4.85999420494195	5.22502310601203	4.99340453004762	5.36769367643464	0.429036146945983	0.221315236845606	0.529441326995811
Merged-chr10-128565393-4	chr10	128565322	128565522	+	975.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011119, intron 1 of 11)	CpG	512.0	NM_011119	18813.0	Mm.4742	NM_011119	ENSMUSG00000025364	Pa2g4	38kDa|AA672939|Ebp1|Plfap	proliferation-associated 2G4	protein-coding	4.95181192685869	5.18054456841346	5.64407869576581	4.94727201266783	5.08491866385785	4.93448588369539	4.6891790044316	5.21409364747324	-0.38991443248726	0.273264914339483	0.58484358685861
Merged-chr3-43215879-1	chr3	43215779	43215979	+	636.0	f0_balb.idr	Intergenic	Lx|LINE|L1	1473261.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	3.16711484156245	3.42811689750054	3.41214148840319	3.39354712865147	3.17695243894889	3.34571382830563	3.69224107167804	3.56736883055457	0.340833262369264	0.526974716119591	0.784045762393687
Merged-chr2-173224214-4	chr2	173224107	173224307	+	913.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_022995)	TTS (NM_022995)	-5285.0	NM_001139519	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	3.92480403270587	4.63108517971024	4.33142509635777	4.10344538407567	4.52179318386047	4.32043261281879	4.22251771597952	4.52980613035218	0.325101452317187	0.439176089960863	0.7271146936017
Merged-chr2-164879390-4	chr2	164879294	164879494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146129)	promoter-TSS (NM_146129)	26.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	5.64981175902714	5.38576826505094	5.36780845691912	5.40380051680488	5.9776953704768	5.82489522874332	5.40260686425099	5.79033868670574	0.543339515068606	0.0519871138747396	0.23737380114822
Merged-chr15-38074721-2	chr15	38074608	38074808	+	559.5	f0_balb.idr|f1_balb.idr	intron (NM_001112721, intron 1 of 58)	intron (NM_001112721, intron 1 of 58)	4146.0	NM_001112721	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	3.19131803700126	3.1797134006956	3.24815610748509	3.15538555671307	3.50290359455374	2.97230339995712	3.06079590788332	3.13116537878063	0.0169559010460613	0.976733611636205	0.991709440769007
Merged-chr8-120363949-4	chr8	120363861	120364061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-124905.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	6.46700602437766	6.12635902429333	6.92362281995819	7.30511966647917	6.56170331846714	5.81266132548077	6.30931698264976	6.51392311203859	-0.662556344388448	0.0378038204449184	0.194384091758141
Merged-chr13-107056528-4	chr13	107056434	107056634	+	961.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	33964.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	5.04621949044998	5.09938881943843	4.35635395156708	4.68108322819108	5.23982417254118	4.94202400703343	4.85575029963518	4.72384595813667	0.275285833860178	0.46375818151103	0.744988576808808
Merged-chr7-101970203-4	chr7	101970078	101970278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133947, intron 1 of 24)	CpG	335.0	NM_133947	101706.0	Mm.27259	NM_133947	ENSMUSG00000066306	Numa1	6720401E04Rik|AA764025|AL022610|AU014979|NuMA	nuclear mitotic apparatus protein 1	protein-coding	5.86804358100919	5.91810773370738	6.24832878894812	5.96360046410107	5.74626416851779	5.81745969701119	5.58343462741662	5.99741361768058	-0.340105966049277	0.186827904144585	0.484982618129374
Merged-chr14-70062299-5	chr14	70062297	70062497	+	977.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15048.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	5.84467513063902	6.46947059386478	6.70172443585536	5.73279362786975	6.33137210998722	6.17103609303761	6.19359396045823	6.31408833144395	0.0213181021360888	0.942750647964019	0.97926361084735
Merged-chr14-72532803-3	chr14	72532677	72532877	+	707.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	177226.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	3.10309659388973	3.07491210249308	3.10354982968708	2.60861167888684	2.83758236783136	2.90663035381453	2.78929454664458	2.9273925642362	-0.512638705506552	0.430245772971332	0.720881944017695
Merged-chr5-115011047-4	chr5	115010953	115011153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029012)	promoter-TSS (NM_029012)	-471.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	7.37511390142035	7.18120951675045	6.89835307568771	7.40578463950415	7.65853401452076	7.57304825710842	7.32976512013825	7.39096716571263	0.346947952053125	0.0869792974907364	0.321652322622117
Merged-chr5-9101132-4	chr5	9101051	9101251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081029, intron 1 of 4)	CpG	414.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	6.35348493293719	6.40050732235589	6.58820559472324	6.34749725026027	6.57397819907561	6.56689206627132	6.67018033561735	5.91779957436286	0.0680946454259768	0.784176221129044	0.915967437099313
Merged-chr7-3948388-1	chr7	3948288	3948488	+	802.5	f0_balb.idr	Intergenic	Intergenic	-32887.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	4.01025757247787	3.80506222856815	3.82256780295749	4.13641863565163	3.48940969937406	3.77889016564797	3.85591555733279	3.71487027504684	-0.741018983101966	0.115473526198868	0.376025664618916
Merged-chr4-150367019-4	chr4	150366909	150367109	+	861.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	85093.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	3.70587413939303	3.78278128819554	3.6524639748369	3.57215529134696	3.85912518907053	3.71318776214367	3.92855320077184	3.6504860954352	0.367818293913375	0.421537103319699	0.714001052191097
Merged-chr7-28826067-3	chr7	28825914	28826114	+	809.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016772, exon 2 of 10)	exon (NM_016772, exon 2 of 10)	676.0	NM_016772	51798.0	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	3.78727833403441	3.80945003661309	3.3760543756098	3.51052896598981	3.44769435293566	3.21996104662815	3.36406951352193	3.54441828945995	-0.7637228456507	0.150268466140313	0.432862361299688
Merged-chr1-64338775-4	chr1	64338661	64338861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-194043.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	6.26360192267587	6.41145450398598	6.31818531063112	6.40249668533556	5.59798208618555	6.06302947075853	5.72678219104302	6.18522983745279	-0.701024380560715	0.00570475839044656	0.052386274334556
Merged-chr10-17485606-3	chr10	17485514	17485714	+	888.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-237614.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	3.50907147957612	3.43191437254849	3.80523652590689	3.56695840083526	3.4332872668069	3.68059273990552	3.4959108677945	3.33001695929839	-0.313090272908277	0.535810372073178	0.789959329600795
Merged-chr2-155044721-4	chr2	155044617	155044817	+	728.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015770, intron 1 of 3)	MTD|LTR|ERVL-MaLR	29780.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	3.73831141859912	4.31365267648507	3.90014228960128	3.884853277936	4.143463621818	3.67262083416619	3.93304292810147	3.94742410485101	-0.0944434705206213	0.840518279468784	0.939305852792169
Merged-chr18-46357102-4	chr18	46356998	46357198	+	977.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45170.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	4.72159404872725	4.85057802813216	4.98407336605388	4.81851342908522	5.10895430997588	5.08788898102662	4.7410321245261	5.16851634625107	0.385546263188965	0.232940620852527	0.542529132777439
Merged-chr16-67621060-3	chr16	67620999	67621199	+	780.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145977)	promoter-TSS (NM_001145977)	-191.0	NM_178721	239857.0	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	4.28234289830061	4.39558688477959	4.64291802676354	4.57602276668458	3.56378426871482	3.77605849358322	3.82527927634994	3.77869385997506	-2.1092434656344	3.93968648148339e-06	0.000120198432947067
Merged-chr2-36232210-4	chr2	36232114	36232314	+	979.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 2 of 10)	intron (NM_008969, intron 2 of 10)	1788.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	5.13657783547862	4.93820039328136	5.64240754671585	5.54353804781295	5.37326316152362	5.09303013839634	5.30259116048343	5.46544607370877	-0.0651563701591296	0.841134538278208	0.939525416908854
Merged-chr12-75738643-3	chr12	75738553	75738753	+	943.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2924.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	3.99254936699689	3.53248150060697	3.61386701326903	3.96406180789011	3.61743960366543	3.73121461206518	3.3614379630611	3.61190683592868	-0.650945968845054	0.198248084353485	0.499755645140838
Merged-chr11-100425997-1	chr11	100425897	100426097	+	614.5	f0_balb.idr	intron (NM_026561, intron 8 of 8)	intron (NM_026561, intron 8 of 8)	10303.0	NM_001163481	14230.0	Mm.3894	NM_010221	ENSMUSG00000001555	Fkbp10	AI325255|FKBP-10|FKBP-65|FKBP65|Fkbp-rs1|Fkbp1-rs|Fkbp6|Fkbprp	FK506 binding protein 10	protein-coding	3.4119884667317	3.74100760601039	3.19450182068991	3.31038761997908	2.91120043720776	3.11470173853395	2.85179791120015	2.93189926993177	-1.99099406677323	0.00178216309789407	0.0213808506902076
Merged-chr8-88668764-4	chr8	88668676	88668876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 4 of 12)	intron (NM_145857, intron 4 of 12)	21429.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	8.24603765136737	7.96292198604994	8.15811388278555	8.23119685554129	8.27246976247138	8.12089540814547	8.44290989726984	8.23041804717742	0.14938999630679	0.365583097697459	0.670295715323899
Merged-chr6-86849805-2	chr6	86849705	86849905	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028298)	promoter-TSS (NR_028298)	288.0	NM_001040106	269774.0	Mm.221038	NM_177762	ENSMUSG00000057230	Aak1	5530400K14Rik|9630042K20|AU067724|AU067726|BC028270|C79663|D6Ertd245e|R75501|mKIAA1048	AP2 associated kinase 1	protein-coding	3.47061640823396	3.65539690167442	3.85208373541267	3.59691539355496	3.90196652842602	3.76611135153511	3.63392256578627	3.94047480068184	0.515784441055256	0.269116523702937	0.580661585396688
Merged-chr3-75556392-4	chr3	75556270	75556470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019745, intron 1 of 7)	CpG	482.0	NM_019745	56426.0	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	5.54120395982289	5.18326334904966	5.43412305738365	5.42676220174225	5.46748089381836	5.46006747372847	5.25867583134318	5.5382623970461	0.0615214778446981	0.827146584272727	0.933686453874248
Merged-chr11-118248686-4	chr11	118248585	118248785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001112699)	promoter-TSS (NM_001112699)	-93.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	8.9467959278382	9.0050469253331	8.83152457248188	8.38553799848148	8.89958811277495	9.02138726542772	8.76789894165582	8.72752760423817	0.0633861532780493	0.732421041483079	0.893963778565797
Merged-chr6-72737090-4	chr6	72736988	72737188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	MIRb|SINE|MIR	51957.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	5.42773107565329	5.2830692627328	5.23761198217165	5.79248771645471	5.36178169348273	5.38241673625821	6.06861654076247	5.69061749649327	0.311457954718931	0.340585940768249	0.649688226489213
Merged-chr1-134418670-4	chr1	134418561	134418761	+	975.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306069, intron 1 of 7)	intron (NM_001306069, intron 1 of 7)	2997.0	NM_001306069	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	5.17025823041028	4.67308691480562	4.57644693876444	4.87320469477593	4.66266832150837	4.79723700197732	4.75931652494312	5.08108341351829	-0.027810676705823	0.937702845676046	0.97744381419602
Merged-chr13-105218786-1	chr13	105218686	105218886	+	803.0	f0_balb.idr	intron (NM_001360891, intron 5 of 7)	intron (NM_001360891, intron 5 of 7)	74228.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	3.36483814600465	3.04325424746647	2.82255071594224	3.46155476250381	2.95511423491018	3.20213184562145	3.08097534997031	3.09037807275496	-0.482335872254949	0.439915249346229	0.727441689701829
Merged-chr7-101363624-4	chr7	101363529	101363729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	-14493.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	7.02930765383254	6.92937333708694	7.06549534617558	7.00541360056166	6.769076911744	6.45638506951799	7.04125204522475	6.52388839237615	-0.398153310636286	0.0653018077875171	0.27204245443683
Merged-chr10-62541711-4	chr10	62541541	62541741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14196.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	6.34385956780963	6.18261843054348	6.32770640250701	6.0570229587498	6.05966966584004	6.2541734711976	6.04730157142337	5.91623942144373	-0.227414235721285	0.338829074009349	0.648178784795838
Merged-chr8-94171593-6	chr8	94171464	94171664	+	913.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1054.0	NM_008630	17750.0	Mm.147226	NM_008630	ENSMUSG00000031762	Mt2	AA409533|MT-II|Mt-2	metallothionein 2	protein-coding	3.83909373290108	3.89369697272145	3.29537819494257	3.28295231097716	3.52157720032615	3.60058806505562	3.52695861139099	3.6462894312476	-0.0974588372382821	0.856068566603747	0.945829263974421
Merged-chr10-30749697-4	chr10	30749577	30749777	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 2 of 14)	intron (NM_001358842, intron 2 of 14)	53649.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	5.03352940636746	5.87386395862777	4.99882824450954	4.6150396655103	5.11008462188642	5.21096510595537	5.17269829760041	4.80174292669921	-0.25337702487244	0.530952851487423	0.786921522009396
Merged-chr7-141195004-4	chr7	141194914	141195114	+	877.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153777)	promoter-TSS (NM_153777)	-129.0	NM_153777	70552.0	Mm.45104	NM_153777	ENSMUSG00000038637	Lrrc56	5730427C23Rik|BB110509|mFLJ00101	leucine rich repeat containing 56	protein-coding	4.30581907029752	4.28955914290931	4.156945185274	3.95509102580816	4.92977826730116	4.65569024090362	4.54063679884033	4.63429451766289	1.24515640769421	0.000979538202335378	0.0132150397467835
Merged-chr19-10388842-4	chr19	10388818	10389018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173068)	promoter-TSS (NM_173068)	-172.0	NM_018801	54525.0	Mm.182654	NM_018801	ENSMUSG00000024743	Syt7	AI851541|B230112P13Rik	synaptotagmin VII	protein-coding	5.33163425025776	5.74908106328932	5.207972518734	5.12881447816086	5.12124420601291	5.35094885767542	5.33509942103847	5.32884066341123	-0.161922359464907	0.605834031146732	0.829156955046678
Merged-chr8-120570452-4	chr8	120570312	120570512	+	926.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 8 of 15)	intron (NM_001145896, intron 8 of 15)	18663.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	3.83953943920706	3.97319763312254	3.78844869137917	3.82069009030729	3.72694999225654	4.01078675434985	3.87328049016135	3.78632548821238	-0.0255089611767372	0.95398743221328	0.983615143586718
Merged-chr9-20696322-2	chr9	20696222	20696422	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357639, intron 1 of 5)	MIRb|SINE|MIR	30681.0	NM_001357635	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	2.73411627792158	2.85342795305228	3.00778839437567	2.85960368233657	3.13741083224358	3.11836241199495	3.11346354123772	3.33157964669684	1.28081338644019	0.0277726680285641	0.159165115749208
Merged-chr11-98933366-4	chr11	98933265	98933465	+	940.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4331.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	5.18713667849547	5.22875816921515	4.90122214727361	4.79779029419849	5.11167987254246	4.66470444205757	4.76664343117454	4.61981099668892	-0.423312480304167	0.23626942151493	0.546286215819757
Merged-chr2-25461104-4	chr2	25461029	25461229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153557)	promoter-TSS (NM_153557)	-35.0	NM_153557	227622.0	Mm.261780	NM_153557	ENSMUSG00000047617	Paxx	D930050G13Rik	non-homologous end joining factor	protein-coding	8.00401098618919	8.13328121783628	7.58551822670111	7.60818132461623	7.79907767674353	8.10094913684733	7.90624033586517	7.8604527386762	0.0875462341505628	0.659079773007022	0.858090014136687
Merged-chr2-70824705-1	chr2	70824605	70824805	+	598.5	f0_balb.idr	intron (NM_172664, intron 1 of 19)	intron (NM_172664, intron 1 of 19)	775.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	3.38296089016561	3.41071312368451	3.49368615170995	3.3723241750134	3.5122595306068	3.43703875542333	3.19005535756484	3.68507365909627	0.196063224135296	0.704299190918888	0.881196215574832
Merged-chr2-126996938-4	chr2	126996805	126997005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11806.0	NM_175550	108011.0	Mm.134045	NM_175550	ENSMUSG00000001998	Ap4e1	2310033A20Rik|9930028M04Rik|AV087807	adaptor-related protein complex AP-4, epsilon 1	protein-coding	5.21955862930656	5.0526064523204	5.00755985002471	4.64560497884781	5.2633008143176	4.9285208343628	4.88037231869607	4.32367516523676	-0.170292157331517	0.664198629574164	0.860892763519835
Merged-chr8-47917230-1	chr8	47917130	47917330	+	699.0	f0_balb.idr	intron (NM_133791, intron 2 of 22)	intron (NM_133791, intron 2 of 22)	73321.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	3.1965719664987	3.20918083197998	3.35001050794195	3.28620870515763	2.58851699119188	2.77812972909134	2.88400234324235	3.02164700573786	-2.0509107012608	0.00249697794790846	0.0277273624577498
Merged-chr13-3895892-5	chr13	3895833	3896033	+	919.5200199999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019671, intron 3 of 11)	intron (NM_019671, intron 3 of 11)	-2352.0	NM_001047159	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	3.19834153386012	3.43878354221209	3.72046967097276	3.26491129886291	3.14536715794612	3.31139183224068	3.30890746522375	3.43158878291709	-0.41306718229466	0.453307577255014	0.737415719616292
Merged-chr13-59004705-4	chr13	59004610	59004810	+	857.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	197013.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	3.83461423253378	3.77627203063276	3.67390480460083	3.95636410049467	4.1423955893052	4.00548377483173	3.81936976014285	3.55260440948178	0.236291895911407	0.618317580814904	0.835969883041169
Merged-chr1-93512034-4	chr1	93511936	93512136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145519)	promoter-TSS (NM_145519)	-68.0	NM_145519	227377.0	Mm.243091	NM_145519	ENSMUSG00000034066	Farp2	AI465173|BC009153|D030026M03Rik|Fir|mKIAA0793	FERM, RhoGEF and pleckstrin domain protein 2	protein-coding	8.49039998807972	8.45028133413425	8.56396226116708	8.79911404203877	8.55320256572327	8.48836036331753	8.5477093051048	8.30022964220566	-0.141490657641864	0.389635657673968	0.689931749777984
Merged-chr17-35829923-4	chr17	35829814	35830014	+	871.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008027, exon 9 of 13)	exon (NM_008027, exon 9 of 13)	6557.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	4.15525825488289	4.1740417991829	3.79262377794417	4.01432572271842	4.13779008673409	4.37016652729423	4.30493253251146	3.95845750954178	0.402576122891773	0.339648568059399	0.648832933028295
Merged-chr3-96226915-4	chr3	96226833	96227033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11D|LTR|ERVK	5861.0	NM_178214	319190.0	Mm.439791	NM_178214	ENSMUSG00000068854	Hist2h2be	AV127319|H2b-613|T25626	histone cluster 2, H2be	protein-coding	7.2165889729548	7.17085324781447	7.10133295679204	7.20789123570352	7.4688902151147	7.38359627114039	7.57005158060789	7.3601186167364	0.367567178258603	0.0366361777597895	0.190534445138712
Merged-chr5-141084498-4	chr5	141084406	141084606	+	983.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-83910.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	5.06838536518249	4.93059699498854	4.67689193873706	4.83417380786274	5.28361109198117	5.40055710515008	5.36835647585896	5.25405417868355	0.839719007665591	0.00545541876116741	0.0506372186965976
Merged-chr14-75068908-4	chr14	75068830	75069030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	MLT1D|LTR|ERVL-MaLR	52903.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	4.86046359329022	5.13803671304376	4.93263476821543	4.93350811094063	4.77903953553134	5.07017090293451	4.76329160908754	4.74305311323555	-0.261702699287865	0.423601794657859	0.715509068389932
Merged-chr1-120080886-4	chr1	120080774	120080974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7094.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	6.25248304535046	6.36822973474234	6.25358657701119	6.45208825885518	6.55441352969585	6.56046431361021	6.35208805890592	6.4825580026898	0.215811038191397	0.318138925775773	0.63003757714634
Merged-chr2-173535457-4	chr2	173535368	173535568	+	947.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	12876.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	4.56916779124144	4.21528284899027	4.86706508232186	4.6748596022024	4.69742399261631	4.6595809093692	4.70469404536532	4.86373855455237	0.276324281451748	0.451033277817959	0.735725036249989
Merged-chr2-58532402-4	chr2	58532328	58532528	+	869.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110204, intron 2 of 12)	intron (NM_001110204, intron 2 of 12)	28982.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	4.10775864824083	4.14648228475405	4.28770287150867	4.26416989694032	4.15592056157069	4.18272821692812	4.18281416839429	4.15311481358444	-0.102426774230611	0.794496465435852	0.920564651199299
Merged-chr1-179845064-4	chr1	179844955	179845155	+	949.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41040.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	4.73760869670758	4.93957587052582	4.57692061093983	4.6041028793367	4.6843482223523	4.70974222828275	4.78906373420482	4.91178417667057	0.118164490663244	0.729876544610601	0.892804127302382
Merged-chr6-86585293-4	chr6	86585218	86585418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42856.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	8.31955918954056	8.64263675727636	8.32650670453776	8.13614571741491	8.52214041645733	8.81041317660358	8.43966811949656	8.32664390559351	0.214794704380472	0.249679201455594	0.560742666586102
Merged-chr8-34807226-4	chr8	34807103	34807303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176933)	promoter-TSS (NM_176933)	-407.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	7.47967704901153	7.2634646657318	7.72702980182603	7.81635749325545	7.7797135003903	7.76090198204521	7.90100998744098	7.72176611875906	0.254904831418788	0.186221145636264	0.484113766444254
Merged-chr3-127035669-4	chr3	127035560	127035760	+	938.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 10 of 47)	L2|LINE|L2	-37208.0	NM_178655	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	4.61269776665952	4.98030621492476	4.76839044430847	5.44651864235613	6.21404929331624	5.79319119222942	6.36887073095023	5.93177148707888	1.80799923073812	6.77630705333116e-07	2.44837949111197e-05
Merged-chr4-55366216-4	chr4	55366123	55366323	+	909.1333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009011, intron 1 of 9)	MTC|LTR|ERVL-MaLR	16181.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	4.31847071017033	4.30923721043358	4.69429642282308	4.96750774731323	4.67114128106279	4.29379518967446	4.09416188588232	4.92098823504115	-0.165200532260342	0.711054075365464	0.884240356833917
Merged-chr12-83958512-4	chr12	83958406	83958606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7898.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	5.56184594754413	5.87306808477494	5.5911572274837	5.43369253056181	6.09560628408447	5.87430947068971	5.8595492905648	5.9073791500743	0.53957096354861	0.0394684492551844	0.200087843435049
Merged-chr4-136053445-4	chr4	136053355	136053555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025919)	promoter-TSS (NM_025919)	-84.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	6.81843183593676	7.09660070285308	6.57157632629662	6.66731984933111	7.20485670407249	7.0908524147133	6.90513420461992	6.68137493860917	0.264897797125461	0.244490315262331	0.555708779858777
Merged-chr2-165320635-4	chr2	165320521	165320721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	205.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	5.22319357314652	5.15599513604767	5.75194716829811	5.71037367049934	5.21623502612804	5.15258544200644	4.98714016192287	5.63535745035514	-0.402704096996123	0.229088719079078	0.538010661957944
Merged-chr10-9902125-4	chr10	9902023	9902223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1083.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	7.92696109362303	8.01723262308851	7.63728181480396	8.36033369569729	7.82391660186427	7.90877427936914	7.95817044376671	7.28807523823253	-0.322808727955998	0.153327527265149	0.437898153186247
Merged-chr18-13301309-3	chr18	13301196	13301396	+	957.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	294306.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	3.78360047872027	3.88489248153866	3.78409524343027	3.88716303394221	5.46717707488401	4.50690855230877	5.06258987654834	5.37924872878563	2.93541657609649	7.85363898135862e-11	6.10944447053689e-09
Merged-chr7-24653816-3	chr7	24653709	24653909	+	779.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7485.0	NR_030681	100043706.0	Mm.483825	NR_030681	ENSMUSG00000108470	Gm4598	-	predicted gene 4598	ncRNA	3.42295709318558	3.76279218521105	3.53412149812225	3.4458239704378	3.37538115231397	3.28074478973505	3.57121198933862	3.53213555730177	-0.342173286227997	0.504815507480507	0.771045513217351
Merged-chr2-156730653-4	chr2	156730546	156730746	+	980.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042487, intron 1 of 6)	intron (NM_001042487, intron 1 of 6)	9367.0	NM_001042487	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	5.17468231682794	5.53927518627182	5.33229159824469	5.17599904032867	5.50206216831417	5.35060678923514	5.11731638166425	5.35776443961911	0.0687102541545436	0.817736971309942	0.929981783742416
Merged-chr11-95713449-4	chr11	95713363	95713563	+	889.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045780)	promoter-TSS (NR_045780)	-709.0	NR_045780	432396.0	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	3.84830306797374	3.65945133891849	4.09848781376644	3.93868948945506	4.13058229313859	4.12792353568109	4.16702411368341	4.22508759866882	0.703509513680346	0.0965646866637934	0.340468487816631
Merged-chr1-165707489-3	chr1	165707385	165707585	+	934.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	609.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	3.50747069811697	3.9019295679281	3.77928227023439	3.5709609805543	3.65419152425884	3.74088622186562	3.55356176250422	3.82497274102331	0.00202821575804095	0.9966187982398	0.998649443287934
Merged-chr1-136430352-4	chr1	136430259	136430459	+	939.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026500, intron 4 of 7)	intron (NM_026500, intron 4 of 7)	-14840.0	NR_024328	320054.0	Mm.208000	NR_024328	ENSMUSG00000097403	9230116N13Rik	-	RIKEN cDNA 9230116N13 gene	ncRNA	4.78073747820356	4.19498995017528	4.41820544881653	5.18061628133214	4.54402971027492	4.29136558054378	4.95141440856138	4.62953228749566	-0.1894859770807	0.668974674702577	0.863357017638244
Merged-chr18-39542035-4	chr18	39541927	39542127	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54782.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.80012739046347	4.7772135417027	4.64479956800476	4.90178390400901	4.90125124070809	4.89855843371901	4.49411513573787	4.90326328189656	0.0406864197174835	0.905365944936446	0.964875093123588
Merged-chr5-115125343-3	chr5	115125244	115125444	+	851.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175352, exon 5 of 5)	3' UTR (NM_175352, exon 5 of 5)	-5998.0	NM_007383	11409.0	Mm.18759	NM_007383	ENSMUSG00000029545	Acads	AI196007|Bcd-1|Bcd1|Hdlq8|SCAD	acyl-Coenzyme A dehydrogenase, short chain	protein-coding	3.82618763899793	3.67885166302545	3.61668792021634	3.88086345161196	3.98662459734626	3.6123764639543	3.71118569738269	3.77520427341192	0.0743671398569907	0.874028688180824	0.95278045864039
Merged-chr17-43061420-3	chr17	43061341	43061541	+	955.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	44886.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	4.19522408743453	3.62127242475131	4.04365337707996	4.16853305040787	3.14580116366311	3.41152331247471	3.35279499158671	3.49204629408453	-2.30383832725286	3.75840974312683e-05	0.000881158916686512
Merged-chr14-70021611-4	chr14	70021474	70021674	+	742.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 4 of 6)	intron (NM_028560, intron 4 of 6)	-55871.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	3.32670817827811	3.77876861487958	3.81976315529488	3.52624861963381	3.63219998910775	3.56891997757192	3.75700948413922	3.51092151522712	-0.00788242350291588	0.987412792767529	0.995271042049364
Merged-chr10-127229088-4	chr10	127228985	127229185	+	787.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008447)	TTS (NM_008447)	-17463.0	NM_001359280	117150.0	Mm.22682	NM_054097	ENSMUSG00000025417	Pip4k2c	Pip5k2c	phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	protein-coding	3.62688463190491	3.83026636570806	3.56568697218152	3.73472955639967	4.05601146928078	4.02090245900915	3.92985627175967	4.16068631103659	0.968107231105722	0.0283496976784827	0.161354800180451
Merged-chr14-51082875-4	chr14	51082716	51082916	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8261.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	4.87516296149803	4.21962084371856	5.04362421365531	3.87014021278093	4.07464629856734	4.30490437184853	4.34624071452389	4.31819544708148	-0.734438089324011	0.128874160910065	0.399380073270456
Merged-chr14-17427068-3	chr14	17426960	17427160	+	930.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-233900.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	3.89739656747543	3.45141778210879	4.20126661223594	4.12119507371651	3.76165021338643	3.80473968395693	3.7807618321279	3.89565079975905	-0.404294126260494	0.410102346498993	0.705514801726933
Merged-chr19-11810602-3	chr19	11810492	11810692	+	742.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	8811.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	3.57435667360782	3.94758623988729	3.46699170862093	3.47323103390711	3.18687684815069	3.63960287187127	3.21023418829317	3.28491381391359	-0.998262965216047	0.0722495568620576	0.288848079526196
Merged-chr6-120189438-4	chr6	120189335	120189535	+	942.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-4388.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	5.33422638372777	5.03330610062327	5.4675420270144	5.68220489659651	4.59969016695565	5.16047538591853	4.88416793380871	4.97989707081105	-0.952967904648725	0.00535327136002775	0.0499921939301253
Merged-chr1-165845432-3	chr1	165845375	165845575	+	737.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113391, intron 1 of 7)	intron (NM_001113391, intron 1 of 7)	56794.0	NM_001113392	12503.0	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	2.5332434449749	2.69358781498137	2.53348158869661	2.5080736164671	2.78739844334745	2.77562636530664	2.72287446817932	2.84888264740364	1.08175974244469	0.090011918268407	0.327603598428168
Merged-chr5-136919099-4	chr5	136918979	136919179	+	963.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015555)	promoter-TSS (NR_015555)	-67.0	NR_015555	66752.0	Mm.135764	NR_015555	ENSMUSG00000097908	4933404O12Rik	AW494809	RIKEN cDNA 4933404O12 gene	ncRNA	4.45946884798601	4.34509848052503	4.06801484896192	4.21621035101706	4.60055571973052	4.45654501177063	4.55964720709163	5.02649330810697	0.908737889781966	0.0184354898748589	0.121277239722975
Merged-chr3-33844320-4	chr3	33844226	33844426	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026222)	promoter-TSS (NM_026222)	-16.0	NM_026222	51938.0	Mm.275710	NM_026222	ENSMUSG00000027676	Ccdc39	4921507O14Rik|AI447426|AI844750|D3Ertd789e|b2b1304Clo|b2b1735Clo|b2b2025.1Clo|prh	coiled-coil domain containing 39	protein-coding	5.79786992824289	5.6708472494171	5.67630096925358	5.68178713261166	5.77613220217014	5.398349279493	5.92211985663411	5.84059863863553	0.0808036305743479	0.759578336945837	0.905741537670396
Merged-chr8-40598099-4	chr8	40597991	40598191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040699, intron 3 of 13)	MER33|DNA|hAT-Charlie	36701.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	6.33393607672649	6.41674120431202	6.21789922205241	6.73263580898968	6.5395361741426	6.47340533492443	6.68590385271491	6.42098874771543	0.107510847281833	0.646270107497707	0.851295585787822
Merged-chr9-114794702-4	chr9	114794594	114794794	+	838.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 2 of 3)	intron (NM_027294, intron 2 of 3)	-12701.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	3.9481497502476	3.87212226263907	3.50438577195431	3.72608168435499	4.07824884759369	3.80783487925077	3.93160146683283	4.0799616891495	0.597914719481331	0.185766917608367	0.483634024587642
Merged-chr7-99781557-4	chr7	99781451	99781651	+	949.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14387.0	NM_146356	258353.0	Mm.377450	NM_146356	ENSMUSG00000073997	Olfr521	MOR101-2	olfactory receptor 521	protein-coding	4.68615981145008	4.77826625022976	4.76476410300024	5.09971041818789	4.9802247787025	4.6474821969707	4.77926759331237	4.60112801056471	-0.183757264625046	0.604413866243937	0.828485859893348
Merged-chr4-126890063-4	chr4	126889968	126890168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357201, exon 20 of 28)	exon (NM_001357201, exon 20 of 28)	77855.0	NM_001357201	67785.0	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	5.63029070259619	5.49812031220303	6.15153480882239	6.48613613230702	5.77592186158073	6.11742761404006	6.3800522191171	6.10773832684182	0.13578520944278	0.674501671129276	0.866144208984521
Merged-chr17-5798671-4	chr17	5798562	5798762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045081)	promoter-TSS (NR_045081)	5.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	6.68453839234547	6.79699908584811	6.06649126565621	6.91716321321908	6.88399017379132	6.9749553569957	6.05931725962175	6.68094271304288	0.0483761054894983	0.867477848262779	0.950331199983684
Merged-chr4-116626849-4	chr4	116626743	116626943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081475, intron 1 of 13)	CpG	654.0	NM_001081475	50927.0	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	6.04837687975524	6.33964290536993	5.78600294921835	5.77373735045188	6.28558652551333	6.46001446714526	6.27095973017353	6.06655572397983	0.425233195524797	0.100076992309869	0.347109455005563
Merged-chr4-86588385-4	chr4	86588288	86588488	+	688.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173400, intron 12 of 16)	B3|SINE|B2	-1818.0	NR_028545	100217448.0	Mm.453533	NR_028545	ENSMUSG00000088958	Scarna8	MBI-57	small Cajal body-specific RNA 8	ncRNA	3.5627908423987	3.47746789699335	3.12681645188237	3.48148503644263	3.77284268197686	3.56750017846543	3.69709324101735	3.56128287363552	0.739063611738103	0.146944616020296	0.42761123563813
Merged-chr8-77610769-4	chr8	77610665	77610865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145599)	promoter-TSS (NM_145599)	-112.0	NM_145599	234463.0	Mm.273578	NM_145599	ENSMUSG00000031617	Tmem184c	8430433H16Rik|AI645453|AL033298|BC004056|Tmem34	transmembrane protein 184C	protein-coding	7.94936619118068	8.14414566207386	7.99967931090173	8.3041014969113	8.2511942005565	7.96867651727197	8.1217938736931	7.92376249387105	-0.0479941911062793	0.785435813812583	0.916485562390221
Merged-chr8-46740572-4	chr8	46740501	46740701	+	885.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	CpG	856.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	4.15709635438058	3.85422271700741	4.36969186309894	3.58282853278923	4.13928143123801	4.41849016079005	3.99452967563268	4.40514555411566	0.603596610107342	0.197698321315836	0.499044730396766
Merged-chr7-105810029-4	chr7	105809948	105810148	+	980.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025301, exon 3 of 3)	exon (NM_025301, exon 3 of 3)	1039.0	NM_025301	27397.0	Mm.44225	NM_025301	ENSMUSG00000030879	Mrpl17	MRP-L26|Rpml26	mitochondrial ribosomal protein L17	protein-coding	5.1753009614235	5.15713448318289	5.14390194785514	5.34612243894557	5.33224196433404	5.10830382676781	4.86906483828184	5.3504541640765	-0.058332058648915	0.850822873498615	0.943739715958266
Merged-chr5-92444306-4	chr5	92444174	92444374	+	796.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007644, exon 12 of 12)	exon (NM_007644, exon 12 of 12)	-9075.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	3.39248167776486	3.22444711252375	3.39293304903478	3.51286477020239	3.2650781223356	3.26199957073592	3.483704931257	3.44476719472568	-0.0950098952363929	0.856208143707215	0.945866020935807
Merged-chr2-180966225-3	chr2	180966125	180966325	+	855.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177708)	promoter-TSS (NM_001177708)	-1000.0	NM_145760	228998.0	Mm.33765	NM_145760	ENSMUSG00000027575	Arfgap1	AI115377|Arf1gap	ADP-ribosylation factor GTPase activating protein 1	protein-coding	3.05024101819405	3.02578903773629	2.89333861309742	2.83018555039204	3.6967787620947	3.67028530971298	3.84853719803348	3.82448171642355	3.03305693348134	4.75037240433679e-08	2.18710709811312e-06
Merged-chr16-20621523-4	chr16	20621415	20621615	+	937.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028420)	promoter-TSS (NM_028420)	-237.0	NM_028420	73047.0	Mm.425977	NM_028420	ENSMUSG00000051146	Camk2n2	2900075A18Rik	calcium/calmodulin-dependent protein kinase II inhibitor 2	protein-coding	4.31213958590736	4.4663345055806	4.52554933994427	4.5682626673594	4.63719821447883	4.06517827159828	4.42450854758971	4.52261387124057	-0.0853456436087051	0.826821583017234	0.933571279466746
Merged-chr9-21321588-4	chr9	21321510	21321710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359227, intron 1 of 22)	intron (NM_001359227, intron 1 of 22)	891.0	NM_001199186	68682.0	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	5.7389951460316	5.774450522741	6.28408730222411	6.1748011835913	5.7386647326094	5.91705569074773	5.96871991472096	5.92952351154808	-0.218643777289341	0.410415058976932	0.705831001326932
Merged-chr17-26497652-6	chr17	26497548	26497748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10824.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	7.92713938867612	7.84521871151752	7.6875563451813	7.38132658010103	7.35904078865816	7.7555218762636	7.25682318551387	7.22012874067011	-0.405003716358594	0.0593191282500308	0.256685803554711
Merged-chr5-140116892-2	chr5	140116792	140116992	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359025, intron 14 of 17)	intron (NM_001359025, intron 14 of 17)	58026.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	3.02376686725408	3.16749228430082	3.27981265859994	3.28381677172452	3.30450108360078	3.39257924467438	3.47837597697656	3.44132299100832	0.728356065893126	0.171871132662462	0.465124394984604
Merged-chr12-83632174-4	chr12	83632074	83632274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027349)	promoter-TSS (NM_027349)	-60.0	NM_027349	67039.0	Mm.46005	NM_027349	ENSMUSG00000010608	Rbm25	2600011C06Rik|2610015J01Rik|A130095G20Rik|AI159652|AL023075|AU043498|RNPC7	RNA binding motif protein 25	protein-coding	8.47304710503534	8.4548878098431	7.84490714195206	8.01455361894203	8.39315912379362	8.64751070786274	8.32913374489103	8.09940994645977	0.200829645137395	0.336720378725226	0.646629460254283
Merged-chr8-128590433-3	chr8	128590299	128590499	+	765.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-95255.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	3.27233957798061	3.05672031148328	3.21657116580533	3.59829393869654	3.30213828111143	3.1395840084799	3.08610425055892	3.03032035715069	-0.622949661288165	0.293831668958196	0.606204004660023
Merged-chr4-141643724-4	chr4	141643609	141643809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	-19875.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	5.71550913304579	5.8518274922369	5.91432865635491	5.84002348357443	6.21669090915393	5.78401031355997	5.81395838113506	6.45722989933588	0.430151688165719	0.109868240096276	0.366057225582454
Merged-chr6-117874977-4	chr6	117874846	117875046	+	933.3624880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12065.0	NM_001001792	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	3.65091891551172	4.18976884982309	4.22403997309487	4.43360520231799	4.07418363428031	3.89579294194612	4.11879922566189	4.08866039598924	-0.311073072751235	0.501186341385718	0.769119803481994
Merged-chr8-105289576-4	chr8	105289481	105289681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166394)	promoter-TSS (NM_001166394)	-53.0	NM_028888	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	7.24089851472202	7.65162294775115	7.4747775193633	7.59476436399697	7.56979635245495	7.8966132024402	7.78792313186328	7.72995469081021	0.314327753915623	0.0901271964915013	0.327789265702753
Merged-chr19-53460559-3	chr19	53460520	53460720	+	772.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028427, intron 2 of 9)	intron (NR_028427, intron 2 of 9)	4176.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	3.13284919625096	3.18058048675335	3.50083166162394	3.57794797160864	3.02946114999306	2.97168921703985	3.1221722526727	2.93561885603503	-1.41363571049057	0.0195349887788895	0.125968798330811
Merged-chr7-93093933-1	chr7	93093833	93094033	+	559.0	f0_balb.idr	Intergenic	Intergenic	14054.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	2.85639023415403	2.89969118567491	2.79644355426153	2.67076008678605	2.52073142690047	2.77265871411583	2.8457353991932	2.66555227714462	-0.495296069069345	0.449435452263479	0.734617277148016
Merged-chr4-136898887-4	chr4	136898810	136899010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007572)	promoter-TSS (NM_007572)	-66.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	8.27640039614342	8.35229392863287	8.16946214183533	7.84239542716436	7.96155186988247	8.06057453682869	7.88895441969848	7.79239842075792	-0.305398748755777	0.0980331001216831	0.343096569650963
Merged-chr3-68713767-3	chr3	68713663	68713863	+	883.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22339.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	4.04755186993634	3.75920534816579	3.81746272039519	3.94561059125231	3.67765161279406	3.65253549186143	3.94342090834107	3.71003511601921	-0.437081612617524	0.338933344800968	0.648223242193853
Merged-chr16-14112376-4	chr16	14112259	14112459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081154, intron 26 of 26)	intron (NM_001081154, intron 26 of 26)	46915.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	5.54233548817929	5.50515986205186	5.07822937637535	5.8715715864799	5.17648847352744	5.36328709303677	5.63791864172631	5.14734362509792	-0.360605736053323	0.269989366169777	0.581767511754897
Merged-chr14-105258777-4	chr14	105258672	105258872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190989)	promoter-TSS (NM_001190989)	99.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	7.41693827105542	7.3997768087725	7.47543610931641	7.46591807728335	7.55442263984908	7.12914812809453	7.61174013899212	7.43243063199058	0.0140162333400289	0.939928210094581	0.978363933407335
Merged-chr10-40066670-4	chr10	40066559	40066759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-41391.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	5.77858660659912	5.66869038936454	5.65889358006568	5.62695103010238	5.27145662935609	5.72856271186376	5.88026517806	5.34057965553348	-0.186168279059112	0.517725095675681	0.779011829301328
Merged-chr1-131103928-4	chr1	131103842	131104042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6099.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	7.50399156840585	7.61534233319324	7.6017778600564	7.46777203940506	7.38318188412747	7.15907718739412	7.67702110180068	7.14389380389143	-0.244621826723665	0.211956569756712	0.516761660514233
Merged-chr13-91505638-3	chr13	91505538	91505738	+	934.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 1 of 15)	intron (NM_001360776, intron 1 of 15)	44541.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	3.90853790464531	3.62252843406727	3.63318941731903	3.69751677596394	3.20395513512814	3.17636323720018	3.61799477393386	3.57869364171435	-1.03846972005804	0.0531188826415724	0.240380758315499
Merged-chr2-158174058-4	chr2	158173963	158174163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17945.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	5.04458845327802	5.10610642816814	5.35238278886833	6.01249920951084	5.48599436767353	5.33453982651979	5.4130301658927	5.668441857592	0.0241587601887207	0.945912878878684	0.980659405533388
Merged-chr14-73170088-4	chr14	73169990	73170190	+	882.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 10 of 14)	intron (NM_134083, intron 10 of 14)	27305.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	4.10829213666392	3.81892165251666	3.73160433087467	3.97049778676277	3.85823766918879	3.6725787044266	4.00658968185199	3.61524765624865	-0.332375278619668	0.473816846257016	0.751365889135324
Merged-chr7-117487054-4	chr7	117486958	117487158	+	992.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175645, intron 2 of 11)	MIR|SINE|MIR	106079.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	5.19977592658718	5.25223732581659	5.69577660390688	5.3758608869755	5.05278489118277	4.97236557539993	5.11006909804776	5.22860648689592	-0.551671334926109	0.072442992914506	0.289312674222164
Merged-chr6-65043294-1	chr6	65043194	65043394	+	744.0	f0_balb.idr	promoter-TSS (NM_001253392)	promoter-TSS (NM_001253392)	88.0	NM_001253392	13990.0	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|etl-1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	4.27015048084489	4.23156927038015	4.54135348959229	4.7609307772227	4.43495822160061	4.75323403381835	4.39340990791231	4.89062476357537	0.31621324032724	0.433267363121694	0.722830392839943
Merged-chr10-14130367-4	chr10	14130281	14130481	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010437, exon 4 of 9)	exon (NM_010437, exon 4 of 9)	164002.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	5.92855146795971	6.13274107846248	6.40748951124032	6.33664521587562	6.01676310651326	6.17332793943187	5.75256381075763	5.6402726048682	-0.477207739911972	0.0701906448871142	0.283663409028171
Merged-chr17-74017353-4	chr17	74017235	74017435	+	791.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053188)	TTS (NM_053188)	30581.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	3.79700372221437	3.96026295740611	3.95246005594018	4.00970771805726	3.75422140434694	4.07460115312107	3.88671793670282	4.13095688001353	0.0658734080476218	0.880525674444629	0.955181994949486
Merged-chr4-133674189-4	chr4	133674075	133674275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1009.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	5.93789955531076	6.00614926925658	5.65215680388773	5.5222402729831	5.76771483275761	5.93022192916494	5.65003618546225	5.84624412097575	0.0296441213116622	0.912829988153224	0.967354887470906
Merged-chr13-60744289-4	chr13	60744177	60744377	+	860.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 19 of 26)	intron (NM_134062, intron 19 of 26)	42087.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	4.1934566864055	4.27789737479146	4.10047171460602	3.90157413068082	4.30198325969156	4.12325724773566	4.13014608892634	4.36007808713874	0.31342485965258	0.443337054395078	0.729895179599094
Merged-chr4-120523312-3	chr4	120523193	120523393	+	925.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355424, intron 12 of 14)	intron (NM_001355424, intron 12 of 14)	-8938.0	NM_177570	194219.0	Mm.29788	NM_177570	ENSMUSG00000047518	Slfnl1	4933406A14Rik	schlafen like 1	protein-coding	4.09937628797457	3.65934769462588	3.6828794027658	3.44464065581608	4.23797192975585	4.13303633604847	4.28455420056791	4.09739909350204	1.28259464037711	0.00494908827344719	0.0471943797257927
Merged-chr2-12301947-4	chr2	12301838	12302038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_138462)	promoter-TSS (NR_138462)	6.0	NR_138462	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	5.64985607629966	5.33778872225767	5.99655114261206	5.855879074312	5.27448435860292	5.42214353461758	5.46424443202451	5.33848349629678	-0.626790085637896	0.0323634225432449	0.176147976745883
Merged-chr8-71296481-4	chr8	71296337	71296537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	23723.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	6.96806612565906	6.90085821432469	6.64331263444433	6.78441533582845	6.42259569871738	6.70678991910813	6.60942542280515	6.49067520793649	-0.39228843174639	0.0610595706204711	0.26121324718235
Merged-chr2-141012108-3	chr2	141012004	141012204	+	679.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-340628.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	3.6109613570443	3.78491202090307	3.9108823494973	3.62131814170656	3.49209694672891	3.26256879795698	3.5405900605469	4.18588625998651	-0.198952146450615	0.718431970804972	0.887579709565285
Merged-chr17-15499838-4	chr17	15499725	15499925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013684)	promoter-TSS (NM_013684)	-63.0	NM_013684	21374.0	Mm.244820	NM_013684	ENSMUSG00000014767	Tbp	GTF2D1|Gtf2d|SCA17|TFIID	TATA box binding protein	protein-coding	7.65658269739194	7.7770237709406	7.6060744940676	7.83062700469034	7.81377909432209	7.79221483775615	7.74853521030089	7.37987127715506	-0.0373957209416335	0.837890374994104	0.938474063450959
Merged-chr14-46761384-3	chr14	46761278	46761478	+	988.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360041, intron 1 of 7)	intron (NM_001360041, intron 1 of 7)	837.0	NM_028222	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	4.05112251617771	3.59837694820198	3.72872581053789	3.67589191669005	4.88429347977221	4.63346893927916	5.0889955684873	5.34710193026054	2.91877273122299	8.73232518480291e-12	7.928037937871e-10
Merged-chr17-67450633-4	chr17	67450531	67450731	+	920.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96140.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	4.46889537639191	4.08572667004564	4.34575290634178	4.4365250889882	4.29164363649817	4.23382521325772	4.36847285864684	4.54288210132707	0.0374447603332702	0.923388292522363	0.971661765008416
Merged-chr2-84531466-4	chr2	84531371	84531571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-24598.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	6.63824537829124	6.52381736091088	6.69803507177224	6.93551505618045	6.30957054771756	6.35112606725264	6.37674257096322	6.45782952277416	-0.509903684995794	0.0204249375535719	0.129783748046971
Merged-chr18-4304194-3	chr18	4304116	4304316	+	968.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48737.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	3.71398422870967	3.69818442763575	3.83511472049104	4.32713837795638	4.42815854090859	4.40152416390375	3.87615975719405	4.46131429232896	0.933539689193724	0.0613280943177683	0.262005688734463
Merged-chr16-22119049-4	chr16	22118961	22119161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	44238.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	7.27909611130614	7.5829737448002	7.21445607743268	7.21939186316003	7.55039630987197	7.18437597604451	7.30641393966257	7.3778869358164	0.050697248691056	0.795603369612691	0.920897975671128
Merged-chr11-76622819-4	chr11	76622718	76622918	+	817.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-45079.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	3.73930270299097	3.63554901034224	3.63727824890494	3.28941158247409	3.67182750227478	3.6428369064697	3.67421132146797	3.78588865025679	0.389274433710697	0.426964957158481	0.718234557355738
Merged-chr14-31380019-3	chr14	31379922	31380122	+	735.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	37655.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	3.58729017895669	3.29759517671806	3.64303189023579	3.24743391412565	4.13297951897934	3.8683079213898	3.77913534624502	3.58579348129107	1.31230605875341	0.0090068921936778	0.0732009457396885
Merged-chr17-32036406-4	chr17	32036296	32036496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028244, exon 1 of 16)	5' UTR (NM_028244, exon 1 of 16)	234.0	NM_028244	72462.0	Mm.102761	NM_028244	ENSMUSG00000058392	Rrp1b	2600005C20Rik|D030064A17|Kiaa0179|mKIAA0179	ribosomal RNA processing 1 homolog B (S. cerevisiae)	protein-coding	6.07921903576102	5.77214759916956	5.12682320288655	5.62975054072292	5.85434564159297	6.17474120089744	5.92912084180218	5.72475622450513	0.380424888266007	0.20863708909637	0.513007192521551
Merged-chr1-126817847-4	chr1	126817750	126817950	+	860.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176957, intron 1 of 12)	intron (NM_176957, intron 1 of 12)	12782.0	NM_176957	210356.0	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	4.82909803216496	5.02539155887634	4.61041426022027	4.64378973686418	5.42155876553407	5.55222406802212	5.35372986611209	5.11547627291985	1.12091631373129	0.000422046479654516	0.00671603987823134
Merged-chr13-58157664-4	chr13	58157557	58157757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001048060)	promoter-TSS (NM_001048060)	8.0	NM_198004	75731.0	Mm.293919	NM_198004	ENSMUSG00000050002	Idnk	5133401N09Rik	idnK gluconokinase homolog (E. coli)	protein-coding	6.53822261958726	6.64689642151213	6.35956026517806	6.61576216886852	6.62339726917131	6.81242696873998	6.82785338191186	6.9209144615563	0.345748072910737	0.0983650017592597	0.343919955802257
Merged-chr15-73147921-4	chr15	73147834	73148034	+	866.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	37013.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	3.98636047921988	3.83648248665535	4.0387399901875	4.08214511841771	4.27198571520263	4.59709547382298	4.16430804341047	4.26801874392943	0.842181235431305	0.0408192542190883	0.204279947694613
Merged-chr6-135235815-3	chr6	135235696	135235896	+	839.1889039999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028982, exon 13 of 13)	3' UTR (NM_028982, exon 13 of 13)	12088.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	4.17030083775302	4.23634650680692	4.4729220265884	4.23690273024263	3.68782315640052	3.89557834484145	3.63963122075107	3.65074774263333	-1.59583068423117	0.000460981226853794	0.00722721454013078
Merged-chr5-116012714-3	chr5	116012616	116012816	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_031869)	TTS (NM_031869)	11712.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	4.89029609489031	4.86612976484637	5.24215010873067	5.36516465522274	3.97320185313773	4.14249798391718	4.43307748865534	4.62685724763671	-1.76883310091592	1.29161110595917e-05	0.000347582559210085
Merged-chr11-102425670-7	chr11	102425576	102425776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4646.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	6.09008053756766	6.37861214196365	6.5247105895611	5.98416916351807	5.95332286898688	6.3902627752514	6.16289327150129	6.45746547706596	-0.00628170921942442	0.980787295918242	0.992958914830175
Merged-chr6-33982881-4	chr6	33982786	33982986	+	952.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46562.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	5.0706212529758	4.92762780738399	4.97156703391403	5.0222750651538	5.02208509093501	4.70218795673825	5.27772567352963	4.82167963200556	-0.0385968023441654	0.906364644531043	0.965332391151937
Merged-chr5-88767153-4	chr5	88767070	88767270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007832, intron 1 of 6)	intron (NM_007832, intron 1 of 6)	2157.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	5.86061857363491	5.60598538843112	5.69310094025058	5.96007717065419	5.62575269866687	6.12168356729977	5.55762969302231	5.66307904533814	-0.0707031671917022	0.799487630829278	0.922568099838429
Merged-chr6-34922136-4	chr6	34922026	34922226	+	914.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009292, intron 1 of 8)	intron (NM_009292, intron 1 of 8)	1178.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	4.30129741702471	4.40062706459817	4.04673204111478	4.636087710485	4.65135285823142	4.37984163957355	4.9789924550989	4.59590532178317	0.655929927141231	0.111558076661434	0.36907238385704
Merged-chr12-120028380-4	chr12	120028274	120028474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82412.0	NM_001160385	217951.0	Mm.387395	NM_001160385	ENSMUSG00000048004	Tmem196	Gm528	transmembrane protein 196	protein-coding	5.0332983355354	5.34380118328421	5.48576405618292	5.27064904115808	5.17015355482635	5.31253016007388	5.07974677742685	5.23102367880039	-0.173866352335603	0.559891149190223	0.804106019788834
Merged-chr17-27820199-2	chr17	27820099	27820299	+	826.099976	f1_balb.idr|f1_c57bl6.idr	exon (NM_001271511, exon 1 of 4)	exon (NM_001271511, exon 1 of 4)	343.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	4.43508115733733	4.49912262329112	4.39130943168078	4.02797897809953	4.52089703724433	4.69345147200971	4.57791820588847	4.84039815599709	0.741353829463397	0.051664317527463	0.236307316365974
Merged-chr1-180936933-4	chr1	180936833	180937033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010094, intron 2 of 3)	intron (NM_010094, intron 2 of 3)	1911.0	NM_010094	13590.0	Mm.378911	NM_010094	ENSMUSG00000038793	Lefty1	AI450052|Ebaf|Leftb|Stra3|Tgfb4|lefty|lefty-1	left right determination factor 1	protein-coding	5.58528838742931	5.43839366580053	5.48058229839017	5.32399364063135	5.49669931018453	5.27694454986208	5.55803934557134	5.47674509242228	0.0210474766154028	0.939351233903853	0.978065281293421
Merged-chr10-22142632-6	chr10	22142474	22142674	+	991.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254744, intron 1 of 1)	intron (NM_001254744, intron 1 of 1)	6696.0	NM_001254744	319887.0	Mm.177746	NM_001254744	ENSMUSG00000097327	E030030I06Rik	-	RIKEN cDNA E030030I06 gene	protein-coding	4.74484469853132	5.00160547407464	5.40714033343521	4.25481132203869	4.63198507508995	4.92562580154712	4.68158683435527	5.62651412531158	0.222464612187841	0.620179637778014	0.837084318577183
Merged-chr9-69994878-3	chr9	69994790	69994990	+	920.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008238, intron 1 of 9)	intron (NM_001008238, intron 1 of 9)	5424.0	NM_001008238	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	4.08139745150348	3.93538859862776	3.67523387981591	4.03096829263257	3.56458507292349	3.49289834261553	3.49205330075446	3.23643029068028	-1.54951371598346	0.00282974399012535	0.0305410686085113
Merged-chr4-11322194-4	chr4	11322092	11322292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081201)	promoter-TSS (NM_001081201)	-61.0	NM_001081201	381510.0	Mm.331486	NM_001081201	ENSMUSG00000045205	Dpy19l4	Gm1023|Narg3	dpy-19-like 4 (C. elegans)	protein-coding	7.68506598270702	7.47880969918038	7.44621665896846	7.4959597819017	7.60397255494779	7.78844974210166	7.63256209882207	7.52631113045389	0.147764236542931	0.393330777102955	0.692447094058087
Merged-chr7-19029481-3	chr7	19029375	19029575	+	868.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360713, intron 3 of 22)	intron (NM_001360713, intron 3 of 22)	5098.0	NM_026605	68188.0	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	3.88366757714215	3.63931548296175	3.57429564412857	3.3398647655286	3.84280215282897	3.56919039646002	3.77272349748284	4.01226825016753	0.604752353297111	0.220319472050155	0.52815976360831
Merged-chr11-121791642-4	chr11	121791532	121791732	+	986.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38586.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	5.66082604902518	5.93071038116658	5.61290479761885	5.40898598753616	5.2881094814232	5.3482664913726	5.30852615785936	5.09349854301796	-0.692265212907591	0.0193876199801259	0.125309664501491
Merged-chr2-34644809-4	chr2	34644691	34644891	+	843.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110441.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	3.49231051774154	3.21078638572105	3.10786564717362	3.63132040687309	3.64061838225483	3.49100743985429	3.89653135048699	3.59761848483972	0.879019150870753	0.114666351152969	0.374533599886066
Merged-chr7-131540292-2	chr7	131540192	131540392	+	893.7999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2671.0	NM_008257	15373.0	Mm.323562	NM_008257	ENSMUSG00000040148	Hmx3	Nkx-5.1|Nkx5-1|Nkx5.1	H6 homeobox 3	protein-coding	3.27852566333825	3.11514618912008	3.69696310398437	3.08341188030018	3.50144439574997	3.45437536968649	3.49011828911513	3.39495705895659	0.539376479899305	0.327439012520748	0.638965891721937
Merged-chr11-94328413-4	chr11	94328324	94328524	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027799, intron 1 of 4)	CpG	423.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	4.60708365863271	4.86613088185313	4.68655748867632	4.57742529931936	4.4255464485782	4.9317250026421	4.3196490306429	4.79296965778035	-0.11241195931789	0.764553887547141	0.907744343909492
Merged-chr10-95564227-4	chr10	95564125	95564325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027722)	promoter-TSS (NM_027722)	-79.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	6.87273920337228	6.89710952235057	6.91484715600142	7.0482030934941	6.99894507105895	7.20662323348621	7.24760754625257	6.93649026034831	0.216570928095091	0.26640885226831	0.578113950660224
Merged-chr11-69129917-3	chr11	69129878	69130078	+	743.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011786, intron 4 of 14)	intron (NM_011786, intron 4 of 14)	3601.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	2.81160916635319	2.5970554478857	2.73503703761766	2.64146568320967	3.67729595854467	3.13552727356882	3.43873080797194	3.25412357781208	3.01242684605838	3.31274580387612e-06	0.000102833813159223
Merged-chr6-122801583-12	chr6	122801396	122801596	+	850.493042	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18688.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	4.1025076503161	4.04557317584503	3.9649430370423	3.9584417592302	3.76556028818356	3.93044677119247	3.84825337856837	4.10056822110733	-0.288406712002534	0.503848982854855	0.770592637321386
Merged-chr10-118041644-1	chr10	118041544	118041744	+	723.0	f0_balb.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-100143.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	2.57712781796359	2.37158574739646	2.68662376258721	2.6572753120947	2.06260661639662	2.11706370952742	2.17521148875883	2.10039826288159	-4.07053869031002	0.000250346004323959	0.00436642446502697
Merged-chr1-134076335-4	chr1	134076238	134076438	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007570, exon 2 of 2)	3' UTR (NM_007570, exon 2 of 2)	2817.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	4.44072301724796	4.04981929015635	4.6315968671318	4.3522501054435	4.04475459609293	4.13307558734713	4.70966492061452	4.55589146597418	0.0152632273693938	0.971807225231351	0.989744687786953
Merged-chr10-96910110-4	chr10	96910008	96910208	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125660.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	4.94913302411378	4.94795861045695	4.65415305015142	5.03462795487803	5.03352012133801	4.788317968653	4.78777494610109	4.26846441191516	-0.309145521390416	0.408285398089674	0.704278459447095
Merged-chr7-75701972-4	chr7	75701869	75702069	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 16 of 36)	intron (NM_029332, intron 16 of 36)	-146369.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	4.8615898702752	4.74246137830947	4.99745012902725	5.03393131610391	4.90745215624584	4.71798277880601	4.7665512438185	4.66751457562968	-0.297329384000555	0.372111748437364	0.67605651493244
Merged-chr17-36161332-4	chr17	36161236	36161436	+	898.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033517, exon 4 of 4)	non-coding (NR_033517, exon 4 of 4)	7201.0	NM_001081032	667977.0	Mm.441651	NM_001081032	ENSMUSG00000073402	Gm8909	EG667977|H2-Tw5l|H2-gs17	predicted gene 8909	protein-coding	4.18829352976524	4.34073733145317	4.41692615215043	4.41635073168473	4.61187989973848	4.41230368662517	4.43759538606204	4.3278298002579	0.254263528864807	0.497548056911824	0.767090702736496
Merged-chr17-86378795-4	chr17	86378691	86378891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 2 of 14)	intron (NM_011104, intron 2 of 14)	-91613.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	6.93702416357811	6.624266566142	7.12953024023102	7.39858329761273	6.88597690480118	6.55842721744197	6.58233213627052	7.21013792037518	-0.310057230912046	0.229599545921078	0.538668581005189
Merged-chr10-51433202-4	chr10	51433126	51433326	+	962.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47386.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	4.70669733482489	3.87114876432406	4.36492952324729	4.80793812129286	4.57075732898849	3.95874587311951	4.30124212689656	4.44659425424339	-0.344614015952432	0.46523338346429	0.745807997310006
Merged-chr7-100582923-4	chr7	100582833	100583033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003559, intron 1 of 7)	CpG	197.0	NM_198831	52443.0	Mm.473730	NM_198831	ENSMUSG00000030706	Mrpl48	1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e|L48mt|MRP-L48	mitochondrial ribosomal protein L48	protein-coding	5.49079350779696	5.38337668880533	4.86707600307773	4.5964627060424	5.15797363850351	5.29688359556145	5.06357112643962	5.27360965955379	0.141674542440048	0.696169718443065	0.877126859863619
Merged-chr16-90280645-4	chr16	90280508	90280708	+	733.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 1 of 19)	intron (NM_001346799, intron 1 of 19)	3878.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	3.37142095659347	3.486490875069	3.37185458851693	3.21743120663502	3.50253497728612	3.42570656948012	3.61726817357056	3.37010080904229	0.437624169549901	0.387929589549119	0.688726934413767
Merged-chr9-85693349-4	chr9	85693282	85693482	+	868.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175371, intron 25 of 27)	intron (NM_175371, intron 25 of 27)	55952.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	4.44191115020794	4.47280394572865	4.39846280249773	5.05728375591201	4.17854590663449	4.38479686237617	4.65712667017618	4.48242139755732	-0.477166777723367	0.252368014892786	0.563645884616847
Merged-chr4-130796135-4	chr4	130796036	130796236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	MIR|SINE|MIR	3599.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	6.17910400444263	6.11663845048769	6.66693031322048	6.49945857026488	6.05104338628864	6.20635442191033	6.06427981302565	6.74281823797438	-0.139251488977698	0.611463265775553	0.832299036485985
Merged-chr5-24602216-3	chr5	24602139	24602339	+	850.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025891)	promoter-TSS (NM_025891)	-237.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	3.30444518576994	3.18787959311607	3.18986428645458	3.41676032767533	3.24559670826088	3.17217323701313	3.39615595894238	3.12684621577317	-0.172445765838901	0.75177199667101	0.902294431953731
Merged-chr1-23792947-2	chr1	23792856	23793056	+	699.875	f0_balb.idr|f0_c57.idr	intron (NM_172124, intron 1 of 3)	intron (NM_172124, intron 1 of 3)	31030.0	NM_172124	280645.0	Mm.471661	NM_172124	ENSMUSG00000026156	B3gat2	GlcAT-S|Glcats	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	protein-coding	3.8752133874977	3.90544896170144	4.02398601632235	4.046391764339	4.3015825272733	3.88596513647056	4.05193057324256	3.76462552866301	0.162825478989556	0.71463113471003	0.885948437473225
Merged-chr10-14131249-4	chr10	14131179	14131379	+	963.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010437, exon 4 of 9)	exon (NM_010437, exon 4 of 9)	164900.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.59093955295835	4.73818818774462	5.14192272090561	5.05301912648469	4.61718288532874	4.5876926544728	4.65334629895852	4.78745211377504	-0.513731741323931	0.147385116079913	0.428395487803116
Merged-chr19-10694076-4	chr19	10693988	10694188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	L1MB3|LINE|L1	5353.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	7.63237814264034	7.45540715292745	7.41210379530109	7.48295303705772	7.29372283825642	7.36726950991303	7.10688682906464	7.2524141316402	-0.319611703224261	0.0732401956538301	0.291368426472388
Merged-chr2-132029245-4	chr2	132029129	132029329	+	981.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 1 of 10)	CpG	759.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	5.15892441882305	4.83670938374366	4.81895900336141	5.17014702390057	4.64275913647003	4.64677367879292	5.19199645846457	5.27020096085062	-0.0926994142378346	0.797891981023025	0.921862017583033
Merged-chr1-138153310-4	chr1	138153207	138153407	+	906.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	21819.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	4.22439996904779	4.42878950026438	4.735773484904	4.47180243895425	4.32879825811558	4.14104714171042	4.54132081147444	4.12229388322243	-0.421671759867383	0.293478968112297	0.606008746948365
Merged-chr3-21808771-4	chr3	21808659	21808859	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-267893.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.9743134232028	6.40341510647786	6.24820008392023	6.1620509995278	5.8408151814399	5.861238097715	5.68106368356014	5.30055110536288	-0.81497794203154	0.00254737329955126	0.0281333567244002
Merged-chr11-50245829-2	chr11	50245729	50245929	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-7297.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	3.04868763303103	3.12958250284429	3.04907964254596	3.2187876648061	2.93262885882316	2.75110571104132	2.85512750446342	2.98872947768905	-1.00726468199653	0.098938522505695	0.344824222368548
Merged-chr16-25061862-3	chr16	25061767	25061967	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040374, intron 1 of 2)	intron (NR_040374, intron 1 of 2)	2228.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	4.03937551649929	3.53173250421109	3.43491913466152	3.87126851449487	3.31963754592422	3.94313805321547	3.48481151970137	3.81906794054397	-0.249802326810722	0.64493008421361	0.850573912153132
Merged-chr18-53267788-4	chr18	53267678	53267878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	MMAR1|DNA|TcMar-Mariner	22116.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	7.6598924341738	7.38603139002259	8.18512275243119	8.00398455932714	7.76533388794664	7.50802602242287	7.98460797944595	7.77820950555654	-0.0995009366067728	0.653891468142218	0.855289789333812
Merged-chr9-40324427-4	chr9	40324341	40324541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	-3118.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	8.45341992812245	8.64247872898283	8.93790883204605	8.88360508650684	8.38580249496267	8.54125945962083	8.74107934189455	8.31846974908173	-0.302673179360939	0.0965545476407387	0.340449603532974
Merged-chr11-70239981-4	chr11	70239873	70240073	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173742)	promoter-TSS (NM_173742)	-121.0	NM_173742	52898.0	Mm.29852	NM_173742	ENSMUSG00000093989	Rnasek	2310033H11Rik|AA571397|D11Bwg0434e	ribonuclease, RNase K	protein-coding	5.42340917765216	5.85597642670801	5.8265255537201	5.57214276794689	5.86495010613831	6.02288050246298	5.4585208329208	5.82237189807943	0.215316402011404	0.439326566815344	0.727224328838519
Merged-chr19-45221310-3	chr19	45221211	45221411	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13925.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	3.87005920303855	4.16386375049417	3.59432643077091	3.78117245720376	4.13309532130676	3.76969862320008	3.85474457955825	4.01061527401408	0.2482951638261	0.594402735364289	0.823411261518897
Merged-chr2-180251423-4	chr2	180251323	180251523	+	973.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5956.0	NM_025587	66481.0	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	5.01334691192862	5.11408872954715	4.79393036099269	4.82540395294146	4.99732306711347	5.00894040016669	5.1169411843665	5.07642041245465	0.220143948692332	0.482792282515358	0.757421686487144
Merged-chr11-117993688-4	chr11	117993587	117993787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 1 of 9)	intron (NR_151726, intron 1 of 9)	6830.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	6.0179352542625	5.98840254005159	5.80077271086563	5.38726065933209	5.87339304566765	5.90264968922599	5.72297186599793	5.56189324876701	-0.0499376741372533	0.862586062261962	0.948225401948674
Merged-chr4-122872128-4	chr4	122872043	122872243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007598, intron 2 of 12)	intron (NM_007598, intron 2 of 12)	13933.0	NM_001358035	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	6.600148338309	6.79926928856888	6.21759618000823	6.24233587098715	6.64791060621686	6.95298705152953	6.80928763749431	6.59659721885414	0.394990338948056	0.0987539814037749	0.344466199164409
Merged-chr6-39381269-3	chr6	39381204	39381404	+	803.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011226)	promoter-TSS (NM_011226)	-49.0	NM_011226	19331.0	Mm.123866	NM_011226	ENSMUSG00000029923	Rab19	-	RAB19, member RAS oncogene family	protein-coding	3.78973998709887	3.8782182070052	4.09482833562929	3.64506334947084	3.54512243242867	3.57150007887725	3.44333179834566	3.68574145218255	-0.900924519513019	0.0673528432880261	0.276907990088281
Merged-chr1-91057745-4	chr1	91057592	91057792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	4248.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	5.3528910618807	5.42762308027919	5.5493292721561	5.38029061377669	5.43465648206926	5.61489486094305	5.35692324452484	5.31957055151883	0.0164935263010998	0.952399585111755	0.983110341498473
Merged-chr19-17348068-4	chr19	17347982	17348182	+	918.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	-8577.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	5.19192515367597	4.92706319360958	4.78478960448549	5.09999762648609	5.27649762565571	4.65304289446731	5.01389491307496	4.85931982995462	-0.055084693592446	0.873056806154827	0.952427521124774
Merged-chr7-89168770-3	chr7	89168676	89168876	+	587.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 6 of 14)	intron (NM_001360746, intron 6 of 14)	170011.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	3.21787468458469	3.38527205439109	3.40436430389833	3.4626561079298	3.4487343830079	3.63105984653329	3.60178443690652	3.565202054245	0.602613642958582	0.229514509707761	0.538593343218012
Merged-chr7-99052606-4	chr7	99052500	99052700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	L2a|LINE|L2	88544.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	7.27835594714304	7.25800541367986	7.05974717876279	7.4192976978049	7.33889630616835	7.22456674597281	7.42049361229635	7.37636695826781	0.0967090358940524	0.60211541829662	0.827431600688833
Merged-chr4-149617114-6	chr4	149616983	149617183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290989, intron 2 of 17)	intron (NM_001290989, intron 2 of 17)	30615.0	NM_023051	65945.0	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	5.35217752324216	5.37702753777746	5.16182009331546	5.22183998963787	5.40781098030399	5.49755663604692	5.2031842275817	5.68473722855064	0.319430013310813	0.268711296964483	0.580332587130134
Merged-chr10-60257586-4	chr10	60257481	60257681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-20047.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	6.82081538828073	7.04904489350879	7.3899933533304	7.38581320324052	7.55032371178605	7.17105133252041	7.42844436478918	7.5399525537243	0.326825974476246	0.126610645273845	0.395628391059616
Merged-chr14-56575570-4	chr14	56575465	56575665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145978)	promoter-TSS (NM_001145978)	-54.0	NM_001145978	328417.0	Mm.379357	NM_001145978	ENSMUSG00000054509	Parp4	Adprtl1|C030027K23Rik|E230037B21Rik|Gm743|PARPL|PH5P|VAULT3|VPARP|p193	poly (ADP-ribose) polymerase family, member 4	protein-coding	7.28466428057092	7.33510824136674	6.94865158819056	7.14374981997195	7.15052815329265	6.97002858367841	7.14361153679107	7.07034349885364	-0.133128473359187	0.489391817142043	0.76169179992188
Merged-chr11-58954590-4	chr11	58954479	58954679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_134309)	promoter-TSS (NR_134309)	-67.0	NR_134309	382522.0	Mm.377898	NR_134309	ENSMUSG00000080712	Hist3h2bb-ps	4930534G10Rik|4933432H21|B2Hist3h2bb|Hist3h2bb|R75370	histone cluster 3, H2bb, pseudogene	pseudo	6.3973721516105	6.7188683892101	6.3608925070805	6.31983878564032	7.06529544688614	6.87036739271808	6.58516439373199	6.59862033993763	0.501438719738915	0.0309725613513543	0.17092541048442
Merged-chr12-87266286-4	chr12	87266162	87266362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142580)	promoter-TSS (NM_001142580)	24.0	NM_001142580	104799.0	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	7.14204596664572	6.94411206739858	7.01312851402052	7.23926302425559	6.99468010626242	6.94348893904303	7.0264768280681	7.03286616691798	-0.135937677810967	0.476116133564164	0.752752032426828
Merged-chr8-46597518-3	chr8	46597415	46597615	+	877.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001184, intron 6 of 14)	RLTR25A|LTR|ERVK	19712.0	NM_001001184	408022.0	Mm.217385	NM_001001184	ENSMUSG00000038225	Primpol	BC065112|Ccdc111	primase and polymerase (DNA-directed)	protein-coding	3.61356217752749	3.4284643674089	3.5123045404186	3.75299335648673	3.85041337624947	3.1101684703172	3.13892221316132	3.27929082526356	-0.624071325597433	0.308043806994494	0.620419629836763
Merged-chr9-37242996-3	chr9	37242900	37243100	+	841.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145960, intron 1 of 18)	intron (NM_001145960, intron 1 of 18)	12738.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	3.80540907796001	3.78088012808222	3.94475619970602	4.16075318969806	3.75895980519975	3.65138805942247	3.33107208271782	3.4072223134962	-1.17189072662374	0.023094349830516	0.140745102442937
Merged-chr7-132358984-4	chr7	132358885	132359085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41757.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	7.349220394166	7.42819487307308	7.93203288541823	8.12392512890432	7.56435235923269	7.6327231075956	7.9730690006401	7.87789870652805	0.0145806990620524	0.949710456499387	0.982014395802619
Merged-chr15-83170206-2	chr15	83170106	83170306	+	988.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 1 of 8)	intron (NM_029787, intron 1 of 8)	2002.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	2.85154573170418	2.6468891158061	2.58053962360134	3.01893017381798	2.65610085745127	2.95961077725591	2.95706939770396	2.91024439649589	0.347687922400264	0.605220338485279	0.828724796787318
Merged-chr12-21208428-3	chr12	21208336	21208536	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004364, intron 7 of 26)	intron (NM_001004364, intron 7 of 26)	77848.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	4.32544190861358	4.68552565647924	4.64741647020861	4.4656798158765	3.63474605567812	3.55550359980538	3.63700481326538	3.89389258188846	-2.39919215764309	5.57853995318022e-07	2.04889006876891e-05
Merged-chr11-29375874-3	chr11	29375754	29375954	+	790.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176841, intron 2 of 31)	MTD|LTR|ERVL-MaLR	1682.0	NM_176841	108686.0	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	3.33968935178855	3.19993811012043	3.07457621528348	3.07095395584234	2.80355590555025	3.18612620623603	2.80637323965071	2.73961927605055	-1.21591763674363	0.0563312804385302	0.248549727890785
Merged-chr6-148444343-4	chr6	148444260	148444460	+	994.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347518)	promoter-TSS (NM_001347518)	-8.0	NM_001347518	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	4.92754702459672	4.74563940479371	5.31647820371976	5.48869983270304	4.74727814648475	5.10525306932433	5.23320526516484	5.28460827745868	-0.124242553814749	0.730965633383373	0.893388729114438
Merged-chr12-82223635-4	chr12	82223534	82223734	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	53618.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	5.11184382119934	4.9090892543585	4.87295812426212	5.16163214915318	4.78305163538489	4.93176426064279	5.11812746540449	5.07763755748072	-0.104233107538777	0.746637438000037	0.900242338303429
Merged-chr4-117918924-4	chr4	117918832	117919032	+	668.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3933.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	3.48854442229056	3.83267334300842	3.81990547896864	3.81376413467153	3.69195243273695	3.83698826776577	3.70381192712703	3.8176477514496	0.0249747548350642	0.956990563156923	0.984757116793997
Merged-chr2-60818305-3	chr2	60818210	60818410	+	776.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	63128.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	3.26464157889635	3.26049398527048	3.53586461934734	3.45468591856855	3.53376446853215	3.17975785593245	3.12896630216566	3.48410589824312	-0.123492396835784	0.822462368848731	0.932143478460956
Merged-chr9-50774117-4	chr9	50774023	50774223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1102.0	NM_133981	102580.0	Mm.160035	NM_133981	ENSMUSG00000032059	Alg9	8230402H15Rik|AI747665|B430313H07Rik|Dibd1	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)	protein-coding	6.29477846956467	6.94238956841234	5.83911140793181	6.4630707981241	6.31864699871567	6.39430603286488	6.45796638417058	6.65549840162554	0.0123182881657941	0.965244496513085	0.987724636888179
Merged-chr3-52729149-3	chr3	52729060	52729260	+	826.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10564.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	2.71123213751849	2.64339521944605	2.78916476607415	2.53030442537525	3.16863286234224	3.24167233712551	3.51130247657655	3.48283653935489	3.12295910570417	7.90608202431818e-07	2.82078702961877e-05
Merged-chr1-92981274-3	chr1	92981180	92981380	+	931.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022320, intron 1 of 1)	intron (NM_022320, intron 1 of 1)	2377.0	NM_022320	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	3.37393123170398	3.36534044967538	3.79029621902458	4.17383470392635	3.21002477459837	3.29008347826272	3.36222648678884	3.48963239782524	-1.3122228443229	0.0245015903579614	0.146382298144144
Merged-chr11-77459576-3	chr11	77459503	77459703	+	822.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291190, exon 14 of 14)	3' UTR (NM_001291190, exon 14 of 14)	-4310.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	3.50434439862269	3.36958185634855	3.39758523132672	3.21671434839748	3.16314657398013	3.33076722587535	3.53989999538722	3.50279386734711	0.0721012510704519	0.891802196975035	0.95952862608333
Merged-chr4-71431660-1	chr4	71431560	71431760	+	551.0	f1_balb.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	769233.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	3.25573951822347	2.88487841021742	3.04196205474307	2.9693184566061	3.05276105332621	2.89109507771612	3.08676253064116	2.71095703364016	-0.393682198757148	0.527847069316928	0.784584092112251
Merged-chr3-65950431-4	chr3	65950328	65950528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019937, intron 5 of 10)	intron (NM_019937, intron 5 of 10)	7821.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	5.60637211313781	5.57689468067281	5.42017559941225	5.5976966354301	5.31475877925384	5.41100252714623	5.47619132018466	5.16233763654796	-0.373279810108428	0.177873884340177	0.473536484418816
Merged-chr2-165885674-4	chr2	165885568	165885768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252584)	promoter-TSS (NM_001252584)	-830.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	5.94422346004531	5.56275656202641	6.02422673324554	5.68133996450704	5.61084305079361	5.43779366263499	5.66919834426366	5.28847224454043	-0.486884687608978	0.0852232533437355	0.317839173591588
Merged-chr4-59549447-4	chr4	59549343	59549543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178164)	promoter-TSS (NM_178164)	-79.0	NM_144904	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	8.33105492092242	8.56403118412941	8.28743794069809	8.28806542849048	8.40614082199325	8.63117144739423	8.3990058432527	8.21744001315613	0.0613602124179443	0.71482577913505	0.886003030420421
Merged-chr4-45530086-4	chr4	45530096	45530296	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033306, exon 1 of 6)	exon (NM_001033306, exon 1 of 6)	632.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	4.80509506899383	4.94775874864402	5.30117979629383	4.84091656576447	4.88726254076043	5.38769773895832	4.74283296312173	5.24164640461541	0.1985464293194	0.569521043528434	0.809382816358399
Merged-chr18-89181803-4	chr18	89181694	89181894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15633.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	6.96253280964698	7.15554840960071	6.98923439691987	6.89219109360399	7.23289040984008	7.0334242340053	7.11849030216074	6.63817630492888	0.0442210481945554	0.835499847395728	0.937451427185292
Merged-chr1-144248429-4	chr1	144248341	144248541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015811, intron 2 of 4)	intron (NM_015811, intron 2 of 4)	663.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	5.47887166173405	5.62530734089234	5.36199558516304	5.52410545126239	5.53325593423824	5.62597712160402	5.33553686791471	5.6342600558895	0.053015413393704	0.845462572515829	0.94153555929146
Merged-chr11-8621870-4	chr11	8621790	8621990	+	863.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	42645.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	4.17031633948336	3.99377776620901	3.99636615158542	3.99355344626616	3.78017256849505	3.85722441509605	3.83212822280951	3.89685435695313	-0.556311079873851	0.197169094848325	0.498447897507065
Merged-chr12-32912939-3	chr12	32912841	32913041	+	648.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	40848.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	3.27387297463887	2.8751183817758	2.89173079373087	3.12487433035005	2.82875847430814	3.73477012867477	3.26051490011464	3.09493949317649	0.810843993182938	0.212383599302591	0.517342055876223
Merged-chr8-25535585-4	chr8	25535484	25535684	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079909, intron 2 of 16)	intron (NM_001079909, intron 2 of 16)	16825.0	NM_001079908	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	4.9318059626382	4.83843489999445	5.30136785929022	5.02497464750324	4.88374623850703	4.64913150322043	5.16423414506567	4.96447796211847	-0.20284125726956	0.545909903356709	0.796028209346237
Merged-chr4-116991589-4	chr4	116991513	116991713	+	820.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009478, intron 7 of 9)	intron (NM_009478, intron 7 of 9)	2800.0	NM_009478	22275.0	Mm.46484	NM_009478	ENSMUSG00000028684	Urod	AI323803|UPD|Uro-d	uroporphyrinogen decarboxylase	protein-coding	3.42142746133903	3.68993616088492	3.47829385011635	3.42766121727792	3.52106236739471	3.27946296647614	3.40919419817028	3.67970768499774	-0.0775706083547823	0.879387944791951	0.954842749021429
Merged-chr19-56390024-3	chr19	56389934	56390134	+	920.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286552)	promoter-TSS (NM_001286552)	4.0	NM_198059	18175.0	Mm.386769	NM_008733	ENSMUSG00000049134	Nrap	-	nebulin-related anchoring protein	protein-coding	3.55638768128678	3.37996658397473	3.97741208333909	3.72713461446527	3.50691342092004	3.42793903860974	3.59659886473961	3.60909823817054	-0.451440465562945	0.375432953389712	0.678419451366497
Merged-chr6-13601789-4	chr6	13601673	13601873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155435, intron 1 of 3)	intron (NR_155435, intron 1 of 3)	6325.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	7.70855698293281	7.77751738529169	7.60338268686367	7.72221390507172	7.4858529171645	7.50459476236171	7.14419234461721	7.18703438237367	-0.479237279742756	0.00906930254069866	0.0735076162086529
Merged-chr16-49791172-4	chr16	49791070	49791270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64484.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	7.1158347650659	7.37207710844536	7.11707914736828	6.20831190554895	6.94210972613409	6.72824309222351	6.66032872315804	5.92079606199396	-0.559904175470676	0.0802455217859626	0.307036284212387
Merged-chr7-16426321-4	chr7	16426163	16426363	+	880.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198631, intron 10 of 13)	intron (NM_198631, intron 10 of 13)	25067.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	3.9828332931191	4.34424352629224	4.23015262420381	4.43799438772105	4.05817451763549	4.10665888543339	4.41609886998828	4.27164130655079	-0.139222043254338	0.737014670721892	0.896200069142298
Merged-chr16-95898093-4	chr16	95897987	95898187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040485, exon 2 of 4)	non-coding (NR_040485, exon 2 of 4)	626.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	6.26155699170917	6.71961510918461	6.16071885557529	5.84076601205178	6.55406904462449	6.94636972835307	6.69722553395581	5.87264420620241	0.429947780365969	0.166267137359063	0.45739103711385
Merged-chr4-95163395-4	chr4	95163265	95163465	+	952.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111143.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	4.26426917439168	4.3673156517058	4.8710533003726	4.52656389455522	4.31884702520652	4.06260622564758	4.38290339831506	4.74153363347813	-0.289967505439416	0.486645182878516	0.760308994317476
Merged-chr10-99430879-4	chr10	99430773	99430973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	167642.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	6.75604041093789	6.90075925834803	6.78544916819246	6.90838111808943	6.74622718394258	6.81417243635989	6.63454441277434	6.22984029265071	-0.30712028969806	0.161717828567504	0.450701382913326
Merged-chr5-41844366-4	chr5	41844272	41844472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310601)	promoter-TSS (NM_001310601)	-57.0	NM_001081422	665775.0	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	8.41574904520949	8.13169645522721	8.75400013341498	8.257524658936	8.34298435264692	8.42968783577953	8.36762397796288	8.40127978868271	-0.0269142179076813	0.882329210065436	0.955717753610026
Merged-chr10-81086811-4	chr10	81086701	81086901	+	841.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145365, intron 8 of 11)	B4A|SINE|B4	12071.0	NM_145365	208677.0	Mm.294693	NM_145365	ENSMUSG00000035041	Creb3l3	BC010786|CREB-H|D10Bur1e	cAMP responsive element binding protein 3-like 3	protein-coding	4.48358525792491	4.03031768917132	3.77806993219445	4.34682753541415	4.10777190482772	4.02012075443652	4.31064241207982	4.40695352688795	0.0606010867516401	0.891948545520158	0.959584134723547
Merged-chr4-46630533-4	chr4	46630428	46630628	+	974.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198664, intron 3 of 12)	intron (NM_198664, intron 3 of 12)	19671.0	NM_198664	381605.0	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	5.72806953978489	6.15624899556454	6.07008240076902	5.99289176675354	5.23540511071034	5.13332010978871	5.72388124652372	5.29240822347512	-1.06546491696716	0.000232492126446503	0.00411450946502627
Merged-chr16-31949225-3	chr16	31949158	31949358	+	963.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027897)	promoter-TSS (NR_027897)	712.0	NM_026554	68092.0	Mm.290027	NM_026554	ENSMUSG00000022774	Ncbp2	20kDa|5930413E18Rik|AA536802|AI843301|C79367	nuclear cap binding protein subunit 2	protein-coding	3.20560759066903	3.32626474321133	3.60674531635854	3.36811068672458	3.57499559965569	3.44728516770263	3.32164036415166	3.74385372143703	0.502681796600437	0.333886316555594	0.644625911590891
Merged-chr3-135628577-4	chr3	135628488	135628688	+	995.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 6 of 24)	intron (NM_008689, intron 6 of 24)	62959.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	5.07683883873984	5.02780976058896	5.07768879281679	5.26262690126066	5.1627903559254	4.90457360351744	5.43466403456068	5.55629373975363	0.299943602330262	0.347607896355904	0.655546119710951
Merged-chr2-163017219-4	chr2	163017104	163017304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172150)	promoter-TSS (NM_172150)	-149.0	NM_172150	245866.0	Mm.34034	NM_172150	ENSMUSG00000017858	Ift52	BC037708|NGD5	intraflagellar transport 52	protein-coding	6.854750917746	6.94519089006989	6.56278154991789	6.8148326064095	6.68879911816242	7.41930685254735	6.83475191020239	7.14418192849079	0.334714919836019	0.155813423607864	0.441682344842062
Merged-chr16-30773005-4	chr16	30772882	30773082	+	894.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	173259.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	5.31464728800526	4.73922860843428	4.78013076498761	4.63758681879385	4.93485713095665	5.13507956229301	4.8691056192638	4.73723952200107	0.0881257523760388	0.805762441964495	0.925293057185577
Merged-chr12-98268648-4	chr12	98268544	98268744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008152)	promoter-TSS (NM_008152)	9.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	6.06569205649858	6.28313669140597	6.21634771756294	6.01011349571873	6.50478681574347	6.54426819324229	6.92077803203154	6.34559727505602	0.675340286270598	0.00445823912097122	0.0436256533395121
Merged-chr4-129600665-4	chr4	129600551	129600751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029748)	promoter-TSS (NM_029748)	-3.0	NM_018799	54709.0	Mm.250874	NM_018799	ENSMUSG00000028798	Eif3i	36kDa|D4Ertd632e|Eif3s2|Trip1	eukaryotic translation initiation factor 3, subunit I	protein-coding	5.87291379083817	5.81017568228662	5.67955384140547	5.52779730677294	5.72221518078042	5.74716177264289	5.9915437179806	5.97748253188416	0.239243324488045	0.35887431989437	0.664818343590072
Merged-chr7-64400945-4	chr7	64400841	64401041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028626, intron 2 of 2)	intron (NM_028626, intron 2 of 2)	8319.0	NM_001355124	73724.0	Mm.10093	NM_028626	ENSMUSG00000033429	Mcee	1110007A04Rik	methylmalonyl CoA epimerase	protein-coding	5.48663469866506	6.12090253415799	6.35133091312455	6.65371252044366	5.39597037423876	5.60551972097282	5.46004292140645	6.05994665666666	-0.917818453869882	0.00641496175249672	0.0570223173662925
Merged-chr4-87812631-4	chr4	87812498	87812698	+	749.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027326, intron 5 of 10)	intron (NM_027326, intron 5 of 10)	-6275.0	NM_029931	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	3.74880473914141	3.83593239325616	3.63474486895309	3.82790115846776	3.99382102650616	3.97523790691835	3.93496408405251	4.03995060329031	0.60427417429365	0.163508732563532	0.453225907361644
Merged-chr12-70476958-4	chr12	70476890	70477090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	intron (NR_037248, intron 2 of 4)	23836.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	5.97748085996166	5.88528162321779	5.86542838445328	6.0094187858932	5.79929911467338	6.13082502672042	5.8357224654694	6.03747593507635	0.0123566425135931	0.959813294750815	0.985652770866479
Merged-chr3-131303193-4	chr3	131303095	131303295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027816)	promoter-TSS (NM_027816)	32.0	NM_027816	71519.0	Mm.473179	NM_027816	ENSMUSG00000027983	Cyp2u1	8430436A10Rik	cytochrome P450, family 2, subfamily u, polypeptide 1	protein-coding	6.66487480242674	6.53468964635704	6.97962771115889	6.992049365185	6.1875716639254	6.15281127198784	6.75841918075975	6.30311673617619	-0.640637504333439	0.0102024849021346	0.0800435663601782
Merged-chr12-111713179-4	chr12	111713064	111713264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027404)	promoter-TSS (NM_027404)	92.0	NM_027404	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	7.03113166068596	7.35137416679527	6.9815162985799	6.95066392510125	7.22314069116294	7.17143525689091	7.1375867126059	7.02740247130966	0.0809308877262426	0.681936188746944	0.869665961565534
Merged-chr5-76275170-4	chr5	76275067	76275267	+	830.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007715, intron 2 of 22)	intron (NM_007715, intron 2 of 22)	28335.0	NM_001305222	12753.0	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	3.90736329642675	3.61645363353112	4.05133420779655	4.34712896670801	3.99626677650442	3.68063576769078	3.89177529602838	4.13601720750886	-0.224209237227446	0.646396219017178	0.851308819772485
Merged-chr4-108369814-4	chr4	108369708	108369908	+	922.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099303, intron 2 of 2)	B3|SINE|B2	13847.0	NM_001099303	545667.0	Mm.380025	NM_001099303	ENSMUSG00000059816	Fam159a	Shisal2a	family with sequence similarity 159, member A	protein-coding	4.27620297825073	4.36338111793143	4.67500716714511	4.65631902624679	4.80576577351566	4.72920114900692	4.69013903354344	4.84898246649842	0.545944231364582	0.128066640575806	0.398289658301451
Merged-chr19-34475861-2	chr19	34475761	34475961	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009890)	promoter-TSS (NM_009890)	-726.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	3.18925667457852	2.92092479908664	3.03208963649364	2.83141477678977	2.86104177704504	2.74836331198176	2.77748057928609	2.85066834344374	-0.815785136140585	0.194948619086504	0.495696890112538
Merged-chr19-60659116-4	chr19	60659024	60659224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-78101.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	5.31127835120737	4.95389206862766	5.65917325838304	5.56691936709363	4.78677969553065	4.64170449116916	5.28544475937148	5.02127164543853	-0.842059173485703	0.0173884400536219	0.116444799565034
Merged-chr15-74721043-4	chr15	74720905	74721105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198607)	promoter-TSS (NM_198607)	-229.0	NM_198607	223626.0	Mm.268603	NM_198607	ENSMUSG00000056665	Them6	4930572J05Rik	thioesterase superfamily member 6	protein-coding	7.53303155682419	7.61205128142434	7.63057615364174	7.74727076064911	7.43176859750346	7.56722402484962	7.59317702501335	7.34321727402664	-0.204364087304778	0.240608026478736	0.551185699479073
Merged-chr13-110563050-4	chr13	110562954	110563154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	168010.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	4.44525400751338	4.7860107168685	4.15656469070959	3.64580235624683	5.03717526586257	5.02182040399679	4.13877116334432	4.30634511112679	0.784011904994961	0.122091707456733	0.387242288214953
Merged-chr19-41896211-4	chr19	41896107	41896307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199447)	promoter-TSS (NM_199447)	-54.0	NM_199447	107094.0	Mm.276044	NM_199447	ENSMUSG00000035049	Rrp12	AA408556|AA536972|mKIAA0690	ribosomal RNA processing 12 homolog (S. cerevisiae)	protein-coding	6.63418072020115	6.38728257151017	5.90445433781705	6.24267042669182	6.58422128506406	6.2482157414669	6.16590591798123	6.29001631916047	0.0384762438359006	0.880969841054216	0.955322489265647
Merged-chr7-75641959-4	chr7	75641854	75642054	+	888.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	186420.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	4.98321967805968	4.78329657894376	4.82005779650441	5.24994047303608	4.46909918444093	4.44157017739678	4.39146562957152	4.40797859016033	-1.20827720432006	0.000917064674253707	0.0125690686294514
Merged-chr2-131233992-4	chr2	131233892	131234092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001206385)	promoter-TSS (NM_001206385)	-71.0	NM_001206383	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	7.834106855205	7.74490114161056	7.80513920330664	8.05529657751731	7.89550317294256	7.59026126953454	7.92498833767883	7.62768214431195	-0.129396713425267	0.476462629243339	0.75301153441342
Merged-chr10-37235720-3	chr10	37235616	37235816	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96790.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	3.20589113440106	2.88624141880798	2.98326879305483	2.9703023585494	2.95887261463316	2.89243166551373	3.08747364530401	2.91949947683689	-0.193153180511066	0.743943180220801	0.899145081565487
Merged-chr5-5301202-4	chr5	5301111	5301311	+	871.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-35143.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	4.21317434857536	4.16482800488782	4.50347443632586	4.56930098477415	4.18445254361592	4.1369293845866	4.24073154531955	4.21125750646164	-0.472201616044671	0.239486549821731	0.549919773203465
Merged-chr7-27285933-4	chr7	27285820	27286020	+	616.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	27159.0	NM_010950	18223.0	Mm.458153	NM_010950	ENSMUSG00000063160	Numbl	nbl	numb-like	protein-coding	3.23045994081126	3.19410085475869	3.35802278237094	3.6904618462095	3.7182328091408	3.79732971125517	3.34610911150245	3.52648303561442	0.676815456428615	0.226940209203338	0.535604327821614
Merged-chr9-78177056-4	chr9	78176993	78177193	+	896.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040401, exon 3 of 4)	non-coding (NR_040401, exon 3 of 4)	1179.0	NR_040401	320295.0	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	4.9951394751943	5.25805303519642	4.87369581757376	4.3152735991095	4.23981042131725	4.29374508548767	4.08946074044987	4.26640634038179	-1.52164923825047	0.000438836238477461	0.00693207381681917
Merged-chr2-153779048-6	chr2	153778909	153779109	+	891.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1870.0	NR_036629	100504221.0	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	3.76229797226999	3.70595272809713	3.71050097536972	3.36015151693617	3.79098720362235	3.88328499045572	3.79681548361032	3.90572225866222	0.650966495095816	0.165633926190924	0.456503416415387
Merged-chr9-47627035-4	chr9	47626926	47627126	+	857.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	96674.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	4.38171984978499	4.08542177075952	4.09185377920489	4.18434841973807	4.25003862160726	3.77107470511291	3.92768560856048	3.99259489752742	-0.467911107441007	0.284818145516668	0.596601873969183
Merged-chr4-123050943-4	chr4	123050857	123051057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151450, intron 8 of 9)	intron (NR_151450, intron 8 of 9)	34364.0	NR_151450	66966.0	Mm.235030	NM_025873	ENSMUSG00000028653	Trit1	2310075G14Rik|AI314189|AI314635|AV099619|IPPT|IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding	5.4556533313282	5.48450001971148	5.30708716692438	5.2002599863622	5.58605019791973	5.45155176784288	5.53658012206153	5.68381910070769	0.375024897563729	0.173355373254063	0.467381192003767
Merged-chr12-100776663-1	chr12	100776563	100776763	+	563.0	f0_c57.idr	Intergenic	Intergenic	-2394.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	3.84635723447137	4.12987498899001	3.79678944121242	3.64767123760647	3.74273735089337	4.01715869778756	3.6199113857804	3.51083325131968	-0.372702666723924	0.446056844971591	0.731816991315728
Merged-chr4-116788202-4	chr4	116788081	116788281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146151, intron 4 of 10)	intron (NM_146151, intron 4 of 10)	19378.0	NM_026654	68276.0	Mm.30534	NM_026654	ENSMUSG00000028688	Toe1	4930584N22Rik|4933424D16Rik|AI413517	target of EGR1, member 1 (nuclear)	protein-coding	6.55060581418898	6.23995736640495	6.77281371209105	6.52708200410885	6.03763831231593	5.55375975485396	6.09197813353956	6.4199336302992	-0.706922090386421	0.00939492825591568	0.0755276257429209
Merged-chr12-82265737-7	chr12	82265633	82265833	+	853.005981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-45616.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	3.54418483694432	3.65232017543228	3.65466109793939	3.54731385272303	3.92169953217699	3.66047410179413	3.64006072756295	3.65261938294833	0.420136369969211	0.369642701887611	0.673855851404263
Merged-chr11-5735108-4	chr11	5734978	5735178	+	916.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	intron (NM_001361588, intron 1 of 6)	6098.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	3.88677343259449	3.91673788605935	3.8331800259133	3.906429702515	4.13929661488628	3.77627382404693	4.01986126632558	4.53443731973619	0.689818014186268	0.123788986474609	0.390324101544973
Merged-chr10-117867486-4	chr10	117867374	117867574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21500.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	6.07206925535843	6.47273743744366	5.96452911911854	4.96441023588282	6.51514160154008	6.44109104566768	6.06226444428302	5.68308026674719	0.371398008746008	0.320065557565534	0.631859556610888
Merged-chr11-117864905-4	chr11	117864830	117865030	+	968.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001085535, exon 4 of 4)	3' UTR (NM_001085535, exon 4 of 4)	4178.0	NM_001085535	546519.0	Mm.385578	NM_001085535	ENSMUSG00000070330	Tmem235	Cldn27|Gm12581	transmembrane protein 235	protein-coding	5.40613402568855	5.15340524321605	4.96121346867037	4.89748283262616	5.01183095760979	4.77449772543995	4.93739041354692	5.06049337571593	-0.296636484261885	0.369269601552046	0.673557670319378
Merged-chr16-95825922-3	chr16	95825835	95826035	+	745.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72778.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	3.39931495115833	3.17728943222104	3.55606625025732	3.33215679656465	3.4756175440324	3.33357785019862	3.27229566628347	3.50403759895261	0.121366259115178	0.816369912036214	0.929332831717909
Merged-chr19-29641222-4	chr19	29641113	29641313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362131, intron 2 of 14)	intron (NM_001362131, intron 2 of 14)	7202.0	NM_001081213	226090.0	Mm.267131	NM_001081213	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|b2b2633Clo|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	7.36449369480828	7.49113937280702	7.26443277515586	7.26129230752861	7.00087189253488	7.38738598876675	7.071429025886	6.77637317396966	-0.37226784176587	0.0691967261913911	0.281259289092271
Merged-chr13-55587135-3	chr13	55587033	55587233	+	750.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-6002.0	NM_026211	67511.0	Mm.45233	NM_026211	ENSMUSG00000058569	Tmed9	2400003B06Rik	transmembrane p24 trafficking protein 9	protein-coding	3.76655162427391	3.51974472301695	3.18322952741832	2.80304087106373	3.91444910764456	3.68395047516414	3.54818095284257	3.81098762281506	1.18887888173106	0.0520517177545658	0.237535047551672
Merged-chr5-92318789-4	chr5	92318681	92318881	+	947.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33C|LTR|ERVL	-8757.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	4.58215143366547	4.62088941605441	4.41001043583198	4.68136184051095	4.85683745577019	4.86919232268015	4.52109131487292	4.31161572628736	0.176678645859263	0.636463637776044	0.846260162390694
Merged-chr5-65108353-4	chr5	65108269	65108469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347355, intron 1 of 10)	intron (NM_001347355, intron 1 of 10)	801.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	6.05049515357748	5.86055978989305	5.96509116683226	6.16526984565249	6.15650906163064	5.86979094929579	6.12042735679217	5.98300823995133	0.0294671622683952	0.903603642537011	0.964287824952031
Merged-chr9-95614154-4	chr9	95614022	95614222	+	828.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23506.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	4.64290400489395	4.30225449758035	4.49523898763883	4.58519076112808	4.11645431862561	4.25974382435092	4.21570711703209	4.49230964571915	-0.576419644769173	0.138039848772049	0.413358788209746
Merged-chr2-153342781-4	chr2	153342689	153342889	+	831.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040318, exon 2 of 2)	non-coding (NR_040318, exon 2 of 2)	3021.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	3.71558138732621	4.0477999754684	3.71607002991394	3.74180569556494	4.20709015262632	4.148459445585	3.51869155757588	4.19217107874233	0.645886468315826	0.180272148215627	0.476611410681675
Merged-chr5-123252050-3	chr5	123251951	123252151	+	922.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23861.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	4.93577380349121	5.07694307403773	4.38922598986897	4.12488588536755	4.65312865473776	4.26867369953162	4.27609191823519	4.24248443215946	-0.682125234591157	0.132627876114272	0.405616550396915
Merged-chr1-165701056-4	chr1	165700950	165701150	+	900.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	7044.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	4.51214560992796	4.88293287426551	4.46849080898192	4.23808319077339	5.19768687746206	4.84969701690462	4.49228520530934	4.41983443219491	0.528193366439917	0.200737755260659	0.502930308662197
Merged-chr2-102902092-4	chr2	102901992	102902192	+	989.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177785)	promoter-TSS (NM_001177785)	-427.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	5.63419266214903	5.56024808902069	5.33185731658058	5.05969935103385	5.91024745882076	5.73299954722993	5.14082227044251	5.23128752135117	0.259745032753103	0.441705589868627	0.728618019977218
Merged-chr2-164492938-4	chr2	164492829	164493029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026797, exon 4 of 4)	3' UTR (NM_026797, exon 4 of 4)	-4596.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	5.91974437186442	5.95341353295537	5.83369223487083	5.82445654562779	5.58849506243837	5.49032946185871	5.44308700780813	5.49615325494663	-0.618168419741488	0.0161352023923996	0.110304223116463
Merged-chr9-40575234-4	chr9	40575137	40575337	+	918.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43854.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	4.60555785837573	4.52728180944624	4.39842053506005	3.59478181665725	5.85627241674097	5.6701958097853	5.71032358988478	5.67432805400301	2.81242335929809	2.17763769813588e-13	2.6496080977028e-11
Merged-chr17-70999356-4	chr17	70999243	70999443	+	892.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026064, intron 1 of 3)	intron (NM_026064, intron 1 of 3)	-1331.0	NM_001357820	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	4.41437593490376	4.22880587348028	4.24190829290609	4.34718532477102	4.5377244800804	4.21948235706186	4.31210520984893	4.28481645947506	0.102256384692584	0.790185884091518	0.918828686312538
Merged-chr10-91170756-4	chr10	91170659	91170859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001283048)	promoter-TSS (NM_001283048)	-209.0	NM_001283048	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	6.3381979893713	6.31112722164544	6.35802952822107	6.28383527489703	6.67992593739686	6.81493041819406	6.51388717283049	6.63500731228458	0.505218931362876	0.0155377297755911	0.107539811187296
Merged-chr6-129058215-4	chr6	129058100	129058300	+	845.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153094)	TTS (NM_153094)	12299.0	NM_153094	232408.0	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding	4.13435725890781	4.29081566875093	4.322422287607	4.14007697283622	4.31484657532272	4.20923882162642	4.7360767731808	4.31970233885684	0.459045288058643	0.245983079468958	0.557185390346692
Merged-chr14-77896148-3	chr14	77896079	77896279	+	896.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8060.0	NM_178825	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	3.61357366683115	3.54330123897752	3.6140352796031	3.630969425551	3.95999913051115	4.15690335285435	4.35765954309322	3.93651606124105	1.42563493242436	0.00159663012212302	0.019629344992458
Merged-chr13-14062714-4	chr13	14062616	14062816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331178, intron 1 of 4)	intron (NM_001331178, intron 1 of 4)	772.0	NM_001331119	14593.0	Mm.148039	NM_010282	ENSMUSG00000021302	Ggps1	1810026C22Rik|9530089B04Rik|AI843169|C79210	geranylgeranyl diphosphate synthase 1	protein-coding	5.26911367129637	5.9156946476919	5.5724647326402	5.61423586676571	5.89428591130715	5.48196078687778	5.46156157185012	5.5951695464149	0.0241572050215269	0.934865197050526	0.97635719558922
Merged-chr14-103421462-4	chr14	103421371	103421571	+	835.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74671.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	3.49769206551375	3.70320424716452	3.76593282078667	3.83996466471848	3.55807653502718	3.61214827186691	3.70141071122985	3.71450232232371	-0.225608334578497	0.635108385299665	0.845595476277003
Merged-chr14-14346245-4	chr14	14346153	14346353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008369)	promoter-TSS (NM_008369)	-242.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	8.06380126019747	8.1023007101662	7.85718780171364	7.69375229964859	8.66323983779436	8.31355779213036	8.23829149929483	8.37852746000493	0.614200597403023	0.000870136642236303	0.0120473557785913
Merged-chr1-86344521-4	chr1	86344422	86344622	+	996.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010880)	TTS (NM_010880)	6763.0	NR_028478	100303740.0	Mm.154378	NR_028478	ENSMUSG00000064837	Snora75	MBI-55	small nucleolar RNA, H/ACA box 75	snoRNA	5.10656060033385	4.98920662098042	4.97283354945256	5.23626980375367	5.00543661618528	4.99891148957863	5.1739686692807	4.89658478855085	-0.137021085332447	0.660700026254883	0.859001764228847
Merged-chr16-17201197-7	chr16	17201072	17201272	+	990.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009456, intron 1 of 3)	CpG	320.0	NM_009456	22195.0	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	4.92079767203617	4.63509552821526	5.08552969564636	4.60005601716685	4.76797882948873	4.78537990494966	4.89773605928244	5.35623068255887	0.320081038244622	0.375764807078838	0.6786228707042
Merged-chr5-105293808-3	chr5	105293710	105293910	+	893.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194336)	promoter-TSS (NM_194336)	-111.0	NM_194336	100702.0	Mm.491210	NM_194336	ENSMUSG00000104713	Gbp6	AI595338|Mpa2l	guanylate binding protein 6	protein-coding	4.33595128662565	4.03924317849763	3.97468775664102	3.90633207757047	4.25798715655966	4.42236711709772	4.0577795813365	4.07261416714689	0.385107526385753	0.36005083503341	0.665611988334495
Merged-chr11-69414619-4	chr11	69414500	69414700	+	930.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001017426)	promoter-TSS (NM_001017426)	-925.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	4.87483154549712	4.72417368821329	5.04254856900283	5.11778579721347	4.74067498356868	4.89920747089799	4.62027050500681	4.87237874401743	-0.355768344087776	0.290862073154985	0.603119162906712
Merged-chr1-131072623-3	chr1	131072523	131072723	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	25220.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	6.50475833781925	6.65656228232027	6.39449714641156	6.39518932142168	4.20954732800862	4.83634270615348	4.55587534407401	4.45763113486101	-3.77810996967955	5.44630799890082e-27	4.45589375923863e-24
Merged-chr6-82042165-3	chr6	82042090	82042290	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	562.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	2.3812125428518	2.53808417696778	2.44237414225444	2.29888189105763	2.040152948769	2.20560072724942	2.02237713856714	2.10426250837846	-2.42863192000003	0.00728899015070047	0.0626976471222609
Merged-chr2-29592811-4	chr2	29592704	29592904	+	805.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26916.0	NM_054050	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	4.11273709168466	4.35049200333767	4.06462074304986	4.43845778167645	4.22749700475514	3.91020309843029	4.18741784889206	4.24695391754288	-0.282155149764263	0.499921563281733	0.768551122091371
Merged-chr18-38232377-4	chr18	38232278	38232478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17820.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	6.22822905828274	6.36871927836658	6.21023172084058	6.33526575423121	5.99801763993305	6.13231879495202	6.19745541862993	5.9509662882159	-0.343074687667988	0.132243331231076	0.404866393014003
Merged-chr11-120489475-4	chr11	120489384	120489584	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027204)	TTS (NM_027204)	-2353.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	5.20396950479685	5.14468828391216	4.50779410629013	4.83406187838206	5.08927538168279	5.40599200133281	5.05427912981364	5.20123578700167	0.464822578784394	0.171855866325511	0.465124394984604
Merged-chr6-42349869-4	chr6	42349761	42349961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011777)	promoter-TSS (NM_011777)	33.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	9.05829879236199	9.16672843411536	9.21003749701706	9.23462551490291	9.17146865907079	9.31186067028118	9.48100542949599	9.17954656892971	0.147698071567854	0.317870073188268	0.629750443650293
Merged-chr16-4587827-3	chr16	4587720	4587920	+	689.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6893.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	3.47949177535926	3.60434629903486	3.67887483200378	3.25163974656279	3.18681067947542	3.42202773553814	3.16882765294739	3.53062367829526	-0.607202572567029	0.268001150939255	0.579836892388985
Merged-chr8-46849567-4	chr8	46849463	46849663	+	908.912476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109818.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	4.3038028482363	4.60935356462265	4.66739274712218	4.15272809813292	4.46336714600544	4.38508084821188	4.2856566219354	4.55457114228938	-0.0228494126390086	0.953879640661061	0.983588075847329
Merged-chr10-34210189-4	chr10	34210077	34210277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2626.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	6.57743898270364	6.517553120974	6.9759702648578	6.84846567512915	6.69608764881017	6.46831339014847	6.60762905055224	6.40145190512284	-0.276154797674891	0.217031353832564	0.52382336083714
Merged-chr2-18917534-4	chr2	18917426	18917626	+	837.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	80595.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	4.55675560566372	4.1051899364363	4.04341567570169	4.07498800937373	4.14054288108846	4.41121390346787	4.21982831880351	4.40527356242317	0.223926899459459	0.587171817413397	0.819078563706115
Merged-chr4-53231209-4	chr4	53231109	53231309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14987.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	5.99512529739829	6.17492572622999	5.9961834560518	6.31980892533186	5.91170555576549	5.53627984142761	6.30819525214171	6.11748182950775	-0.218297280734913	0.421191359209261	0.713809041837048
Merged-chr11-116852497-4	chr11	116852418	116852618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011358, intron 1 of 2)	CpG	576.0	NM_011358	20382.0	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	5.90908517660555	6.0442321392986	6.10686660354409	5.75445033813913	6.34764748150234	6.13265075641656	5.99242217883846	6.18089021635268	0.360352377787877	0.141650658166911	0.418816599528155
Merged-chr18-59175214-4	chr18	59175130	59175330	+	909.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081328)	promoter-TSS (NM_001081328)	-110.0	NM_001081328	78923.0	Mm.84007	NM_001081328	ENSMUSG00000058152	Chsy3	4833446K15Rik|AI662215	chondroitin sulfate synthase 3	protein-coding	4.37548085949445	5.30290110394421	4.78978494877098	5.13854688266087	4.23637061209683	4.2965229066497	4.35693662164157	4.59636542262741	-1.26820930185383	0.00200081949562415	0.0234121865656799
Merged-chr3-90084080-4	chr3	90083987	90084187	+	949.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357581, intron 1 of 8)	intron (NM_001357581, intron 1 of 8)	4566.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	6.04091939013199	5.94504928679044	5.92593291323382	6.09381834182858	5.08134210993197	5.07705210404654	5.03373638071801	5.20490532279123	-1.58112164522455	9.27657253443558e-09	4.94975379631627e-07
Merged-chr1-64358529-1	chr1	64358429	64358629	+	808.0	f0_balb.idr	Intergenic	Intergenic	-174275.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	2.9325096468053	3.07845328611854	3.21137485947541	3.52957602081035	2.5996699296313	2.60201965904612	2.85949487558749	2.57870523677161	-2.83630463485354	0.000304646570577909	0.00513727511186092
Merged-chr7-45897430-3	chr7	45897335	45897535	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291064)	promoter-TSS (NM_001291064)	366.0	NM_144801	70209.0	Mm.163766	NM_144801	ENSMUSG00000002781	Tmem143	2310076O21Rik|AI481604	transmembrane protein 143	protein-coding	4.72320145186565	4.51409709032429	4.65209027339814	4.53803194104461	4.47341420157422	4.11611974672389	4.73533357798826	4.44930583653502	-0.310410962018604	0.41379251643932	0.708758457956118
Merged-chr5-3905685-4	chr5	3905569	3905769	+	888.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11736.0	NM_172135	545725.0	Mm.99593	NM_172135	ENSMUSG00000040429	Mterf1a	4931431L11Rik|9230106K09Rik|Mterf|Mterf1|mTERF1b	mitochondrial transcription termination factor 1a	protein-coding	4.13545840896468	4.22036609768266	4.698903684722	4.71420582994822	3.98876764688667	4.15638471398389	4.38789268567081	4.18307799620649	-0.718900820609845	0.0929469745457416	0.33357198730702
Merged-chr8-71611999-4	chr8	71611900	71612100	+	918.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146211, intron 1 of 11)	intron (NM_146211, intron 1 of 11)	976.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	3.88156251790474	4.13429333428294	3.98407599205142	3.68528565258594	4.33133072384784	4.20343463459038	3.69909263033043	4.02974498367785	0.455660066684598	0.323534745785714	0.635032741000305
Merged-chr11-78176505-4	chr11	78176417	78176617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080849, intron 1 of 14)	intron (NM_080849, intron 1 of 14)	149.0	NM_080849	140859.0	Mm.23788	NM_080849	ENSMUSG00000017405	Nek8	4632401F23Rik|b2b1449Clo|jck	NIMA (never in mitosis gene a)-related expressed kinase 8	protein-coding	6.31935616767177	6.61109426922783	6.58152750603436	5.896218769715	6.23102483485314	6.28038315241608	6.21371016529019	6.07714016827281	-0.249257378559388	0.345438484056147	0.653735298398409
Merged-chr16-85122131-4	chr16	85122006	85122206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	MLT1F|LTR|ERVL-MaLR	51601.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	5.88022784551173	5.8908714359903	5.8812642063347	6.37055857571904	5.57015633804181	5.86015317637696	5.87384068698367	5.59634366301918	-0.51442725150445	0.0629574627114932	0.266050751247063
Merged-chr4-134729005-4	chr4	134728906	134729106	+	955.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-24716.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	4.75979398080216	4.86698145965982	4.83625472800444	5.09331148044195	4.8307516099766	4.53597917691688	4.73832738398556	5.18311493149829	-0.127174693450452	0.718515720154277	0.887579709565285
Merged-chr2-91963734-4	chr2	91963667	91963867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138306)	promoter-TSS (NM_138306)	-204.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	8.12372951352795	8.22632588353582	8.23403250093391	7.95582498148753	8.20029021213623	8.30269737872679	8.31112699422368	8.24587658682875	0.167700794495104	0.292335034122667	0.604654036582073
Merged-chr9-44498615-3	chr9	44498523	44498723	+	852.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030256)	promoter-TSS (NM_030256)	-513.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	3.82313036966379	4.13651493121885	3.61079830772694	3.57729461017131	4.02825903165398	3.66895458870293	3.47795176814113	3.71950393821906	-0.161371291310283	0.752799450980869	0.902657672182807
Merged-chr1-138172327-2	chr1	138172227	138172427	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	2799.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	3.21392589516076	3.47573563867895	3.21432400650462	2.98435019860417	3.29994632309509	3.1264602703769	3.37335277003095	3.62937443170763	0.512074516008746	0.365677991722026	0.670381065141288
Merged-chr12-110485309-4	chr12	110485190	110485390	+	873.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012023)	promoter-TSS (NM_012023)	-449.0	NM_001081457	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	4.07802248189991	3.70411181070805	3.80496475400277	3.66077011596278	3.85428484608544	3.9253273871525	3.62879601484721	3.75090639716146	-0.0458787589671696	0.921466985295762	0.970886721487516
Merged-chr5-104032613-4	chr5	104032528	104032728	+	761.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10832.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	4.3787165515725	4.43581991694376	4.24613548811666	4.07731646426683	4.18832061489151	4.59143199228093	4.40047704331598	4.33377020736818	0.237118772611285	0.548389333593439	0.797382448842745
Merged-chr5-24470746-4	chr5	24470631	24470831	+	770.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359881, intron 1 of 15)	intron (NM_001359881, intron 1 of 15)	18554.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	3.30333650799973	3.24815322548919	3.52584729293007	3.32534780150053	3.61991305938335	3.53397400861179	3.4063166587877	3.30210978090346	0.429203965631766	0.403294311832803	0.700700507615324
Merged-chr6-30048408-3	chr6	30048340	30048540	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164226, intron 1 of 11)	CpG	452.0	NM_001164227	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	4.92871381137873	5.55502082180648	5.73202030057644	5.16643752072574	5.1955613323392	5.1478847710444	5.15697082098279	5.24278488395197	-0.344153851647303	0.294954129303849	0.607054074772029
Merged-chr3-144589277-4	chr3	144589168	144589368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053102, intron 2 of 4)	intron (NM_053102, intron 2 of 4)	18841.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	5.3629719026595	5.45855783596485	5.86644273240166	6.02375518060747	5.45612375186374	5.51039535127471	5.59829557113547	6.04440886861074	-0.0853135768742954	0.785816621591996	0.916674445381636
Merged-chr9-7221646-4	chr9	7221562	7221762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37157.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	8.29451418622503	8.41211859639342	8.44534371913035	8.56940946920031	8.46072619851006	8.40954249754007	8.29598286450924	8.12711409182847	-0.135142808576641	0.407398822641994	0.703636793592033
Merged-chr19-3852522-4	chr19	3852364	3852564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 1 of 11)	CpG	691.0	NR_073190	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	5.18156124863131	5.41838290239077	5.33633698046323	5.38710639197397	5.48051402800373	5.29122235472934	4.6940101267582	5.33261645306735	-0.174547854041317	0.591970944461897	0.821896878240415
Merged-chr10-80742399-4	chr10	80742298	80742498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007460)	promoter-TSS (NM_007460)	-123.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	8.48900894599137	8.82472224150384	8.37067119790096	8.32151946347433	8.5191873575126	8.69751876057744	8.66073389342341	8.44450403478346	0.0856629545146985	0.628341016475013	0.841496269199325
Merged-chr3-89394884-6	chr3	89394779	89394979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040404, intron 1 of 1)	intron (NR_040404, intron 1 of 1)	589.0	NR_040404	545539.0	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	-	predicted gene 15417	ncRNA	5.03993728050153	4.74911135926829	5.19662087843507	4.44355505226435	5.086093007542	5.27794678264574	4.87717298338693	5.16334496975403	0.46766850978957	0.19226838177512	0.491824448203475
Merged-chr16-31233541-4	chr16	31233422	31233622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32284.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	6.08028295243942	5.94214838660283	6.45759859859851	6.10673717925251	6.06336359805879	6.21464939712163	5.79817323786545	6.13814906528345	-0.145120069344898	0.565484881888849	0.807565364947013
Merged-chr3-142394909-4	chr3	142394791	142394991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190854, intron 1 of 12)	intron (NM_001190854, intron 1 of 12)	805.0	NM_001190853	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	7.86898395047262	8.06121934645788	7.89243633648668	7.95158844814981	7.97334331911706	7.94691305714974	8.12255178317867	7.83489100547281	0.0341196722197882	0.834607038093522	0.936951838440142
Merged-chr11-20107879-4	chr11	20107780	20107980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146243, intron 1 of 8)	intron (NM_146243, intron 1 of 8)	5071.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	6.24548739311922	5.98640046629098	5.88798996967904	6.39177189824708	6.43713610971503	6.731351636811	6.56782519679343	6.42360345558371	0.565086234755003	0.0204250909063371	0.129783748046971
Merged-chr11-106084307-4	chr11	106084202	106084402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011947)	promoter-TSS (NM_011947)	-600.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	9.3240733545207	9.52345739823786	9.43582210403888	9.3630296207405	9.32931027019732	9.64510816323342	9.6278697220775	9.266972040447	0.0779021486021587	0.618401423443897	0.836000920352511
Merged-chr8-72162798-4	chr8	72162709	72162909	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023126, intron 1 of 7)	intron (NM_023126, intron 1 of 7)	1609.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	5.18732186889609	4.85778534131932	5.01250800638485	5.17920446616957	5.52261452841458	5.22768397775421	5.50336909541388	5.73438226885193	0.787501991415814	0.00917196069555985	0.0741707555497904
Merged-chr16-30676032-4	chr16	30675926	30676126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76303.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	5.60768737484759	5.53358829421748	5.34047500374465	5.6862698969588	5.91708284537429	5.64376705576276	5.94803343641905	5.80315065301804	0.458783987275483	0.0832731241380138	0.313613635080407
Merged-chr15-26362290-4	chr15	26362191	26362391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	53243.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	6.22954728334403	6.02000231317848	6.0316603118808	5.94787286960323	6.03748905162156	6.04765462082958	6.16174745583407	6.16989074582342	0.0814449953886539	0.727250769951072	0.89142174034391
Merged-chr7-7374703-2	chr7	7374597	7374797	+	759.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	24930.0	NM_001105062	100042591.0	Mm.469891	NM_001105062	ENSMUSG00000096373	Vmn2r31	-	vomeronasal 2, receptor 31	protein-coding	3.38224978005885	3.20325428148712	3.09685989099269	2.82648648400336	3.94901242856721	4.28188966720812	3.93581457447358	3.56264384640089	2.81912311689542	4.6275349682669e-07	1.72813909499617e-05
Merged-chr6-120042960-4	chr6	120042850	120043050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4295.0	NM_001185021	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	6.41913788806511	6.14589978920215	6.42027724298663	6.78680439628062	5.81552092378864	6.12286951957015	5.96117015257722	6.0551411207081	-0.752665998054439	0.00326737598547684	0.0341209734844859
Merged-chr6-82798067-2	chr6	82797967	82798167	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23613.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	2.87036890785824	2.78302609696271	2.73546626477819	2.88146181404674	2.94479049817787	3.0420963245677	3.03835550257076	3.10343289726052	0.889713045484908	0.133162203676616	0.406412507310601
Merged-chr7-45019103-6	chr7	45019003	45019203	+	855.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360132)	promoter-TSS (NM_001360132)	-367.0	NM_001360132	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	3.48986734693026	2.99582738806894	3.2141404105423	3.13355703025185	3.38644528880176	3.2634805102411	3.20263551576918	3.62880163133586	0.599830827241922	0.283613543856476	0.595722718088449
Merged-chr7-16781275-4	chr7	16781190	16781390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009201)	promoter-TSS (NM_009201)	-56.0	NM_009201	20514.0	Mm.1056	NM_009201	ENSMUSG00000001918	Slc1a5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding	6.31289378802899	6.22928588281954	6.0171818126502	6.2553985678953	6.13958100652465	6.2790043380397	6.05136863658924	5.99041262589777	-0.144119751848689	0.534608143298081	0.789286995820758
Merged-chr14-14800551-4	chr14	14800452	14800652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360516)	TTS (NM_001360516)	-20263.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	5.79534839861467	5.78903250807164	6.03827881316409	6.24668182167562	5.4723328539592	5.64546014116352	5.81419204649176	5.83979546178981	-0.493458131873406	0.0710662602543888	0.285932131515863
Merged-chr16-33934915-4	chr16	33934808	33935008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	32130.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	5.62426929543119	5.43288106955503	5.3996716945657	6.07108414997365	5.50140680412294	5.51427430958872	5.5174366478804	5.74411477421527	-0.194132076539628	0.523879574045834	0.782647016014066
Merged-chr13-35478376-3	chr13	35478283	35478483	+	849.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-181479.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	3.71902486632264	3.88473355571867	3.92156345345479	3.91288814256072	3.8958743398115	3.52807436582545	3.80881923262766	3.96498484888882	-0.145683187878848	0.750813610677618	0.901855648088396
Merged-chr10-63339070-4	chr10	63338957	63339157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019812)	promoter-TSS (NM_019812)	-22.0	NM_001159589	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	7.90268341767703	7.9389043730178	8.1456255079861	7.92997919990933	7.89300380544951	8.05231357369842	7.68032881980637	7.76179894672358	-0.163195815462533	0.344102296875246	0.652610656810439
Merged-chr11-115403866-4	chr11	115403752	115403952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361463)	promoter-TSS (NM_001361463)	100.0	NR_154991	68572.0	Mm.271062	NM_026729	ENSMUSG00000018858	Mrpl58	1110001A02Rik|1110002E03Rik|Ict1|MRP-L58	mitochondrial ribosomal protein L58	protein-coding	4.86322350279297	5.23495253036059	5.39615210633254	4.95929107171108	4.90328316266466	5.07818702088386	4.98657904173976	5.00741265134284	-0.252455378300384	0.436548433624453	0.725186775580137
Merged-chr1-54933737-1	chr1	54933637	54933837	+	693.666687	f0_balb.idr	Intergenic	Intergenic	-7350.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	3.10911667300193	3.46455269736345	3.22297908990713	2.75405018872565	3.1765363026891	3.09601960417552	2.90941366927194	2.84719943424386	-0.573781536122719	0.376685270918593	0.679388848314064
Merged-chr17-67352600-4	chr17	67352489	67352689	+	994.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	1870.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	4.54897346016419	4.8408859702957	4.87445525672061	4.67750031363411	4.83227854320059	5.27337711363088	4.85102403651972	4.97440385883746	0.502329676058911	0.136226204454112	0.410674897583299
Merged-chr8-116237735-4	chr8	116237627	116237827	+	772.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-267288.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	4.60835856292978	4.19846564388497	4.50221313124646	4.35623546177135	4.02578432644093	4.28902385923188	4.04495843535169	4.1600721062086	-0.721092118627847	0.0746030446247428	0.294497822250824
Merged-chr4-133213017-2	chr4	133212895	133213095	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008154)	promoter-TSS (NM_008154)	-459.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	4.60387303659504	4.29676881914252	4.30087526979595	3.67504573621324	3.95368184465168	4.43058100805625	4.09880989507454	4.25450334515768	-0.149733172598485	0.751577833887571	0.902195066080063
Merged-chr14-40936604-4	chr14	40936505	40936705	+	903.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	11604.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	4.92180040685334	4.33972720011293	4.35119712220093	4.8710900078782	4.71543733960023	4.38017759704249	4.46758492387538	4.64694215589111	-0.205380897059378	0.603297783737708	0.828026186791373
Merged-chr3-88913931-4	chr3	88913824	88914024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144898)	promoter-TSS (NM_144898)	26.0	NM_144898	229524.0	Mm.440405	NM_144898	ENSMUSG00000068922	Msto1	BC008103|mst	misato 1, mitochondrial distribution and morphology regulator	protein-coding	7.40954635166787	7.58767564494274	7.40101265845182	7.51208453892634	7.21358799785625	7.44332208308665	7.2297991752891	7.46291245563594	-0.196179693882788	0.275557480936721	0.587365793297842
Merged-chr6-123261703-3	chr6	123261601	123261801	+	661.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010819)	promoter-TSS (NM_010819)	-406.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	3.61940458001623	3.64974596601568	3.33378665777235	3.35776214241222	3.60772944189056	3.88558726615026	3.44284267672379	3.39449206353171	0.332584272980251	0.517531364764693	0.778934386631695
Merged-chr1-105993399-4	chr1	105993312	105993512	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	3006.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	5.68010659938696	5.78085886743639	5.30051001554162	5.8746516286349	5.66653664955505	5.30134389181901	5.70161556832398	6.06534712880402	0.0399722982037174	0.895178548866072	0.960764192429517
Merged-chr1-59907183-4	chr1	59907080	59907280	+	957.6124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-5826.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	4.76960612323342	4.3573366334466	4.51343589540021	4.83344494998643	4.21968010299739	4.09111725304011	4.40931843977854	4.69903199179392	-0.608522242967267	0.133496063253164	0.40682092247707
Merged-chr15-102283093-3	chr15	102283007	102283207	+	908.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3651.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	4.21501841930151	4.07305834246158	3.66467347866647	4.26160404398129	4.30002239251373	3.78321328349933	3.87734408919933	3.89078637799515	-0.239478757357121	0.616993296986016	0.835291303503194
Merged-chr11-77028256-2	chr11	77028156	77028356	+	905.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010484, intron 13 of 13)	intron (NM_010484, intron 13 of 13)	29659.0	NM_010484	15567.0	Mm.300318	NM_010484	ENSMUSG00000020838	Slc6a4	5-HTT|AI323329|Htt|Sert	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	protein-coding	2.59983113622121	2.61395066224248	2.87851510193204	2.49621415483032	2.4169470159708	2.26294024187137	2.24108004475696	2.59880839785479	-1.4959376221961	0.059094474296169	0.256143353127379
Merged-chr1-153332536-3	chr1	153332441	153332641	+	659.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010683, exon 1 of 28)	5' UTR (NM_010683, exon 1 of 28)	245.0	NM_010683	226519.0	Mm.1249	NM_010683	ENSMUSG00000026478	Lamc1	Lamb2	laminin, gamma 1	protein-coding	3.24614145797824	3.59077250467541	3.91834374262609	3.01714332351653	3.0891033840038	3.22935861575988	3.17113327722638	3.42104085087921	-0.891447860383074	0.146819705883057	0.427422488550107
Merged-chr2-124610440-4	chr2	124610320	124610520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172537, exon 1 of 17)	5' UTR (NM_172537, exon 1 of 17)	124.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	8.72961307854413	8.56016807926671	9.20783696083785	9.1180886881085	8.60369660573095	8.48543907717054	9.10476492520273	8.69519102372203	-0.235536217297332	0.262216583355463	0.574115106927125
Merged-chr11-16969865-4	chr11	16969729	16969929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	18419.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	6.88072235456478	7.22495955681867	7.05613083663718	6.95022535924728	6.996156063734	6.82561762581653	6.89904067542721	6.03794513170657	-0.40096779112934	0.118350591239338	0.380577218605143
Merged-chr17-25985774-4	chr17	25985684	25985884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347334)	promoter-TSS (NM_001347334)	12.0	NR_151779	50817.0	Mm.216072	NM_015830	ENSMUSG00000037326	Capn15	Solh	calpain 15	protein-coding	7.40175301578392	7.61704429278964	7.23602395596022	7.26080543942801	7.40237092860808	7.46777151017861	7.39517358483685	7.24208127023274	-0.00710982440199767	0.969787755475599	0.989095984799937
Merged-chr10-42841799-3	chr10	42841700	42841900	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18712.0	NM_172938	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	3.40970202357995	3.77103781706302	3.41011784862237	3.88774858400302	3.38521902052118	3.64079838301441	3.39808841197424	3.5233789537669	-0.534424786292516	0.309403657086481	0.621662432848957
Merged-chr6-116227878-4	chr6	116227783	116227983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026585, intron 15 of 30)	intron (NM_026585, intron 15 of 30)	19850.0	NM_026585	28006.0	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	6.43958925601275	6.52624752506628	6.24270461120377	6.59117874201435	6.15345797175098	6.06434812368443	6.42422156404511	6.13687461788711	-0.397944091309943	0.0848947761403888	0.31700943266553
Merged-chr19-37693038-2	chr19	37692938	37693138	+	964.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001105201, exon 6 of 6)	exon (NM_001105201, exon 6 of 6)	-4770.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	2.39212106374541	2.3053226020123	2.72914080041333	2.09071397774964	2.08499707114559	2.21138151225345	2.10239623212222	2.18361134753805	-1.63280000871036	0.0551221712434628	0.24542827880874
Merged-chr15-25358115-4	chr15	25358021	25358221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	55643.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	5.95523884383529	5.58889045225815	5.7404073504237	6.02232951840277	6.15507508549044	6.06371675318945	5.98998357634244	6.01645953654504	0.332839772712529	0.187755311756173	0.486148975463538
Merged-chr7-132799895-3	chr7	132799799	132799999	+	679.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	-12964.0	NM_175268	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	3.90510740558769	3.78223090275003	3.95192151220699	4.64662688654381	3.0725647754871	3.44469361997147	3.38422583377426	3.64435563013538	-2.35942742413152	7.86936975464244e-05	0.00165642998334216
Merged-chr6-125490102-1	chr6	125490002	125490202	+	666.666687	f0_balb.idr	intron (NM_007657, intron 1 of 7)	intron (NM_007657, intron 1 of 7)	4658.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	3.7787209612638	3.70227207600146	3.58256551423775	3.4337840898865	3.45030007808591	3.58711950070154	3.40015663121252	3.52632526254722	-0.430254621750859	0.38875296785998	0.689088741391211
Merged-chr5-32726342-2	chr5	32726228	32726428	+	784.916687	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	20014.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	3.277097931937	3.51110589657345	3.76681379107892	3.09075406299204	2.57615460643404	2.78552323133497	2.66624698284008	2.82998679449421	-3.85254134595405	1.34600525195211e-05	0.000360177848980074
Merged-chr12-112673093-4	chr12	112673002	112673202	+	989.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331107, intron 1 of 13)	intron (NM_001331107, intron 1 of 13)	1174.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	4.82343082922961	4.74034654610636	4.89565964113549	5.20824864032022	4.76532858323145	4.47095312090705	4.80133474962102	4.95989092902935	-0.374340811780113	0.292244600856506	0.604629649004919
Merged-chr1-171502831-9	chr1	171502670	171502870	+	988.9021	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019484)	promoter-TSS (NM_019484)	-708.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	4.1786204947608	4.29888043495481	4.07318002781777	3.87459264353488	4.72953511157063	4.74365533975005	4.47379528051451	4.7117403880343	1.34169233606856	0.000440442282837702	0.00695435697650949
Merged-chr15-76246806-4	chr15	76246724	76246924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023168)	promoter-TSS (NM_023168)	17.0	NM_023168	66168.0	Mm.41665	NM_023168	ENSMUSG00000022564	Grina	1110025J15Rik|Lag|Tmbim3	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	protein-coding	5.84586207725939	6.34698385837669	6.1209083841201	5.95301742814064	6.30063537663534	6.41319576870557	6.08959660787296	6.13688670453892	0.253382693136355	0.303824098201067	0.616555796305716
Merged-chr7-19813727-4	chr7	19813641	19813841	+	812.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033601, intron 2 of 8)	intron (NM_033601, intron 2 of 8)	9014.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	3.55609394467287	3.51561080305732	3.44703299732087	3.70359763040416	3.59654491125465	3.43938893521578	3.59319711900124	3.32583371170199	-0.230065421414798	0.647454968892998	0.851667779256884
Merged-chr2-155534273-3	chr2	155534170	155534370	+	889.605591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019811, intron 2 of 17)	intron (NM_019811, intron 2 of 17)	16227.0	NM_019811	60525.0	Mm.255026	NM_019811	ENSMUSG00000027605	Acss2	1110017C11Rik|ACAS|Acas1|Acas2|AceCS1|Acs1	acyl-CoA synthetase short-chain family member 2	protein-coding	4.0132668335568	4.35017999872325	3.97092925764402	4.13601407948428	3.14843631888295	3.26644793128426	3.42540475799592	3.22546221208591	-3.14591688477166	1.83143844785224e-07	7.44914041598141e-06
Merged-chr6-131269757-4	chr6	131269654	131269854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22392.0	NM_008462	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	7.80135203122975	7.72507151218408	7.80998366430435	7.97163189539479	7.36804117225813	7.30654362783458	7.2003589261325	7.2429543577239	-0.731329856720014	2.65983751456727e-05	0.000654875733135192
Merged-chr8-31031839-4	chr8	31031746	31031946	+	953.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57681.0	NM_025869	66959.0	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	4.6356627843977	4.43816952056459	4.86624084662421	4.81825094131008	5.7614147743683	5.98890833067622	5.4661061547903	5.94647883531091	1.96545115392683	1.39192121175801e-09	8.71376956303637e-08
Merged-chr4-53149901-4	chr4	53149802	53150002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	9993.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	7.89180216141149	8.37755925012218	8.54543512142284	7.95681138101837	8.02408177607239	8.19827403296684	7.98212294886579	7.46698209885932	-0.351860621217477	0.120978158010984	0.385163676211649
Merged-chr9-114648662-4	chr9	114648566	114648766	+	847.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8466.0	NM_153585	78893.0	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	3.97202098764118	4.10282615750303	4.18578887312701	3.9538008008947	4.70656931330802	4.73725530463548	4.11790694778381	4.73509047577323	1.30662336112184	0.00120063699405186	0.0155750210679091
Merged-chr17-50182650-4	chr17	50182541	50182741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	7856.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	5.96678833200839	6.45580472682468	6.63204422657357	6.6906300402091	6.24657682841967	5.88826464140997	5.76157819750376	6.07644360300454	-0.696960041370808	0.0103518279752177	0.0809350574964873
Merged-chr4-109280247-4	chr4	109280156	109280356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007943)	promoter-TSS (NM_007943)	-19.0	NM_007943	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	7.68354345330629	7.89887716331349	7.15535707324474	7.42663757584612	7.59471476406812	7.80375127691533	7.77089680780352	7.53286214423598	0.142622053974115	0.499442124220935	0.76837831150136
Merged-chr2-18989036-4	chr2	18988938	18989138	+	981.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	9083.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	6.39442224021094	5.92421577242338	6.1024816154956	6.57879774728315	5.95125884802408	5.40739507466361	6.39473202632002	6.05618596048106	-0.43430758189798	0.154495825080304	0.439801241388062
Merged-chr5-103754815-4	chr5	103754710	103754910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	237.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	5.98732865896245	6.45451143282055	6.54183194353392	6.12176294795822	6.68163176896178	6.71767574775477	6.45957552544291	6.83472794872666	0.573642807366454	0.0154518943553984	0.107103942771731
Merged-chr9-90054426-4	chr9	90054317	90054517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007801, exon 1 of 12)	5' UTR (NM_007801, exon 1 of 12)	150.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	7.21030810227135	7.54977298874091	7.10279610269158	7.13073671779782	7.91188704446705	7.77439863634633	7.77015991582642	7.21802705282192	0.582851382592221	0.00769584478727842	0.065367844404975
Merged-chr6-71908976-5	chr6	71908826	71909026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009088)	promoter-TSS (NM_009088)	-127.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	4.96306849092769	4.97413531098107	5.18652418636168	4.71940886320739	5.17849668698938	5.03021686420867	4.58492670514858	5.06068663146174	0.0628624058596181	0.855949630724255	0.945801681068115
Merged-chr11-106475481-1	chr11	106475381	106475581	+	556.0	f0_balb.idr	intron (NM_023913, intron 1 of 21)	intron (NM_023913, intron 1 of 21)	12315.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	3.07065918510442	2.90960355782373	3.07108110283678	3.01723818526759	2.71172719995764	2.93278666547284	2.9437660026638	2.95280620240807	-0.594243748335999	0.32603751117854	0.637555604620255
Merged-chr7-19210873-4	chr7	19210766	19210966	+	756.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1672.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	3.37635380575662	3.62884915772462	3.44190526609397	3.54438305898896	4.12161622835026	3.68126562287154	3.71178126345465	4.00025673630118	1.17643106576969	0.0153034604159759	0.106354716749536
Merged-chr1-171411328-4	chr1	171411235	171411435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305677)	promoter-TSS (NM_001305677)	22.0	NM_001305676	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	5.97726786504544	5.93357545802182	5.80427417466374	5.86465509896834	6.51137435046659	6.78018776741398	6.28994387965595	6.2820249785864	0.892070745021929	0.000192137516818056	0.00351662543316853
Merged-chr11-72607809-4	chr11	72607716	72607916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025985, intron 1 of 5)	CpG	555.0	NM_025985	67128.0	Mm.458052	NM_025985	ENSMUSG00000020794	Ube2g1	2700059C12Rik|AI256795|AU014992|AW552068|D130023C12Rik	ubiquitin-conjugating enzyme E2G 1	protein-coding	5.76291376122441	5.91741555617634	6.10023969376951	5.46017301768353	6.17076928828882	6.03863964712524	5.94568196229586	6.09586399750718	0.410811033372791	0.124753321903093	0.392131450639886
Merged-chr6-124415128-4	chr6	124415050	124415250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277330)	promoter-TSS (NM_001277330)	-83.0	NM_175933	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	7.26788636567702	7.52133790292177	7.10259682866771	7.36598460709645	7.73908709389441	7.47978565595179	7.68459287963371	7.8700531482976	0.496030235697477	0.00867836274073642	0.0712805425251416
Merged-chr13-47232344-4	chr13	47232226	47232426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 4 of 7)	intron (NM_146042, intron 4 of 7)	38323.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	7.76499891179027	7.83839089896264	7.97908768493113	7.80883537673793	7.81275527037743	7.70609475409863	7.17490196946359	7.36401413707992	-0.396476989978439	0.0496285849498706	0.230693959647359
Merged-chr5-110780045-3	chr5	110779907	110780107	+	920.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152254)	TTS (NR_152254)	589.0	NM_019700	56361.0	Mm.23528	NM_019700	ENSMUSG00000029507	Pus1	A730013B20Rik|MPUS1|mPus1p	pseudouridine synthase 1	protein-coding	3.86674027172572	3.43864285698348	3.6230925854725	3.40747621401327	3.54633839569971	3.50437239093408	3.4975049695324	4.0307597874639	0.235657327800728	0.649598681431952	0.852797294781466
Merged-chr13-81137600-4	chr13	81137511	81137711	+	883.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	173537.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	3.58989529744245	3.66595787724535	3.75870820594235	3.91835036446092	3.78241010378177	3.82328928155657	3.98010135532121	3.95125625125823	0.376138811841532	0.411968933234478	0.70726552639751
Merged-chr4-141138620-4	chr4	141138516	141138716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277195, intron 1 of 3)	intron (NM_001277195, intron 1 of 3)	1180.0	NR_102344	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	6.1927939607924	6.24739000636975	6.17367828841976	6.42585558337624	6.314191935059	6.30853582608668	6.39825830563622	6.30446794106385	0.0789923257639161	0.722332254712269	0.889146347741714
Merged-chr11-19926740-4	chr11	19926650	19926850	+	964.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	2308.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	5.00337699121424	4.65500155928279	4.93983490784636	4.61877457438929	4.62530685803502	4.89826066249304	4.84843780647725	4.72110054969365	-0.0596685766585707	0.863216196107259	0.94855832686559
Merged-chr17-47766165-4	chr17	47766056	47766256	+	794.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-19588.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	3.49144204020307	3.67473369693275	3.42751529244093	4.09299264914223	3.89689593225149	3.7292548377596	4.06733827022443	3.66625295238134	0.379757492167736	0.474426764488535	0.75165589989079
Merged-chr9-108443532-4	chr9	108443427	108443627	+	950.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004192, intron 2 of 3)	intron (NM_001004192, intron 2 of 3)	7045.0	NM_001004192	434439.0	Mm.78372	NM_001004192	ENSMUSG00000050641	BC048562	-	cDNA sequence BC048562	protein-coding	5.33824554805194	4.93600751351011	4.82520434315192	5.32971410150084	5.006747058827	4.74514667680092	5.08385791879188	5.13675496378785	-0.263375756231915	0.434077768381886	0.723456574627106
Merged-chr7-127014540-4	chr7	127014428	127014628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080638)	promoter-TSS (NM_080638)	66.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	5.691774070089	5.76807823662519	5.71733285949843	5.40190898514157	5.70130515760339	5.81653658085299	5.35897974994814	5.66371143371093	0.014160829554433	0.95944396861295	0.985513818852278
Merged-chr7-145198510-4	chr7	145198462	145198662	+	900.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132643, intron 19 of 22)	intron (NR_132643, intron 19 of 22)	9557.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	4.05572704809302	4.04400811863625	4.21014924823892	4.69004115682893	4.31567588647501	4.43175925683739	4.66598321971146	4.38784108443242	0.351969014317997	0.418898853509203	0.712150249972705
Merged-chr1-163758015-4	chr1	163757916	163758116	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21567.0	NM_001305643	16579.0	Mm.4651	NM_010629	ENSMUSG00000026585	Kifap3	KAP-3|KAP3|SMAP	kinesin-associated protein 3	protein-coding	4.87147161928871	4.9207741126551	4.75983101987407	4.87440555898796	5.39662692152209	4.42653647009552	5.04591891478564	4.54475122638527	0.14452587294067	0.713696716260627	0.885468561919243
Merged-chr5-69556926-4	chr5	69556828	69557028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172711)	promoter-TSS (NM_172711)	4.0	NM_001310631	231279.0	Mm.21105	NM_172711	ENSMUSG00000029208	Guf1	4631409J12|AA407526|EF-4	GUF1 homolog, GTPase	protein-coding	8.55612175490355	8.6756055443635	8.34201925275744	8.82996025605053	8.74611957019885	8.86372628101976	8.78970314127371	8.77653335113785	0.215263901950543	0.189879518032603	0.48897703139117
Merged-chr17-35896844-3	chr17	35896778	35896978	+	790.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001142744)	TTS (NM_001142744)	500.0	NM_001033630	69662.0	Mm.260159	NM_001033630	ENSMUSG00000050705	2310061I04Rik	-	RIKEN cDNA 2310061I04 gene	protein-coding	3.69189372871771	3.72979828307205	3.32863178750948	3.72585383842236	4.22088166866222	3.69896520875909	3.72884757015801	3.57995473298512	0.613656629392769	0.234609625634523	0.544447848974703
Merged-chr5-67846483-4	chr5	67846341	67846541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	990.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	5.53795571733062	5.44262454447722	5.51225640191805	5.55949215023999	5.43526431391609	5.24483128157638	5.58726496992905	5.39584422470674	-0.16106148795691	0.556209201210048	0.801846753708994
Merged-chr12-99326259-3	chr12	99326155	99326355	+	786.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 3 of 5)	intron (NM_183186, intron 3 of 5)	123819.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	3.29538588055509	3.18992356159654	3.29578390120204	3.63114762023696	3.63284559728528	3.27991128649566	3.55043549611204	3.29417414969156	0.256354151782841	0.644331425710239	0.850166542555413
Merged-chr3-61409856-4	chr3	61409766	61409966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45359.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	6.13999828454686	6.26789484460297	6.41280179637641	6.2034280614652	6.21714562352536	6.12191889070623	6.31335240858841	5.52651402238857	-0.265360892386902	0.317157785117321	0.629004569152014
Merged-chr10-25319232-1	chr10	25319132	25319332	+	940.0	f0_balb.idr	Intergenic	Intergenic	-20069.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	3.69859417856356	3.21379676372373	3.43773080127712	3.71680303963277	3.38819194803949	3.6653206421162	3.36645561354743	3.59882058395181	-0.108006726898352	0.838863735682271	0.938856878340637
Merged-chr11-116095202-4	chr11	116095123	116095323	+	844.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8228.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	4.35228078291028	4.08832594999912	3.98376763874641	3.55666594954899	4.55009358305338	4.30922141388338	4.1165779373124	4.26736644151988	0.788205580885338	0.0853214778953788	0.318041894659862
Merged-chr11-106675485-4	chr11	106675346	106675546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	39835.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	7.99649689776509	7.90942394310381	7.63662121284002	7.39791538352638	7.42930106891879	7.54412276732325	7.31939745594688	7.14648840653964	-0.503304508803865	0.0166730085865073	0.113057833493284
Merged-chr4-71126828-3	chr4	71126701	71126901	+	996.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-591873.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	3.42004101335143	3.59907092676643	3.73923790776129	3.44731184872786	4.16850340564985	4.45659783722036	4.3044534760089	3.79285744179043	1.82842361965845	9.40771672007918e-05	0.00192866321549112
Merged-chr15-59643974-4	chr15	59643893	59644093	+	766.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4661.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	3.87811148883128	4.22145809329327	3.87868651589654	3.51642830550632	4.01690099286061	3.95011309935397	3.81231360183926	3.4080229838103	-0.20660467837372	0.691003746997124	0.874245896263794
Merged-chr18-62720157-4	chr18	62720047	62720247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168423, intron 1 of 4)	intron (NM_001168423, intron 1 of 4)	21240.0	NM_001168423	100038417.0	Mm.387557	NM_001168423	ENSMUSG00000073551	Spink13	Gm10534|Spink5l3	serine peptidase inhibitor, Kazal type 13	protein-coding	6.9927529413784	6.87281247461381	7.21897691289028	7.00956993631364	7.15126110809651	7.30602811697829	7.57752129429575	7.10060089374741	0.365680343608279	0.0731073041748702	0.290986121112961
Merged-chr11-94070567-4	chr11	94070467	94070667	+	824.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025428, intron 4 of 26)	MLTR14|LTR|ERV1	26362.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	4.52381502464459	5.21897666258317	4.47895744927968	4.96997690831897	4.53243559907661	5.01234477810318	4.58994074553798	4.52167757830209	-0.354381432146426	0.370428251479799	0.674651054502855
Merged-chr3-61404328-4	chr3	61404218	61404418	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	39811.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	5.00483877484431	4.80765807398291	5.24013838392418	4.62425237594942	4.99454901025582	4.93219876429829	4.6546340529197	4.54181372256076	-0.251068145526631	0.494334111074732	0.765017343396711
Merged-chr11-115060022-4	chr11	115059919	115060119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172050, intron 1 of 3)	intron (NM_172050, intron 1 of 3)	2020.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	6.16071850000038	6.73582280791993	7.08893464373815	6.96451785087247	6.40095743359286	6.58773868586123	6.95116288073895	6.76187988233209	-0.144588888940881	0.587149674953623	0.819073308396926
Merged-chr19-4439453-3	chr19	4439321	4439521	+	728.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045990)	promoter-TSS (NR_045990)	22.0	NM_007485	11854.0	Mm.27701	NM_007485	ENSMUSG00000041845	Rhod	AI326383|Arhd|Rho|RhoHP1|RhoM	ras homolog family member D	protein-coding	3.4767897488425	2.97372619692605	3.00497866013609	2.62558380010194	3.20248736894552	3.64729352206752	3.18954624055369	3.42458658379916	1.19161662240866	0.0655375745021038	0.272518521078772
Merged-chr14-69854114-4	chr14	69854019	69854219	+	724.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 3 of 6)	intron (NM_028560, intron 3 of 6)	13712.0	NM_028526	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	3.54604740434461	3.86050106266718	3.30504915466329	3.51868657312994	3.71340220415481	3.48332099313812	3.58610661858362	3.65023511278361	0.130429852928726	0.796184038744403	0.921052599307061
Merged-chr1-36948124-4	chr1	36948014	36948214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-8587.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	6.36874671081527	6.21664964120155	6.15080383858206	5.51890776647365	6.19061997819658	5.93577098396679	6.35369016778516	6.24229441140814	0.163452343686274	0.567815075703106	0.808331754798167
Merged-chr12-16887672-3	chr12	16887577	16887777	+	997.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7301.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	4.97345818540227	5.00767502226928	5.20759336454794	5.49342339143928	4.15479842866439	4.28571367507261	4.35358812631073	4.31845076363	-2.03989789831879	7.45689149922303e-08	3.27755623534422e-06
Merged-chr4-132611552-4	chr4	132611460	132611660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27486.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	7.44530415047233	8.1111898323122	7.27562604359323	6.39359397605357	7.70474872466607	7.75778028285376	7.27087551595828	6.62416740493844	-0.0525345671391538	0.923869001681273	0.971863340184091
Merged-chr1-192138161-4	chr1	192138064	192138264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144814)	promoter-TSS (NM_144814)	-124.0	NM_001290282	214742.0	Mm.207457	NM_144814	ENSMUSG00000037395	Rcor3	4921514E24Rik|C730034D20Rik|E130101E15Rik	REST corepressor 3	protein-coding	6.34501123169411	6.1892056441856	6.13270465236857	6.65632428632886	6.28141061114704	6.37087468254735	6.41586817207464	5.99483844913423	-0.135681136337618	0.589206671885725	0.82035760221728
Merged-chr7-81856405-4	chr7	81856306	81856506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-2595.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	6.13893355188604	6.16326668377219	6.11995685536261	6.30710638005908	5.89478049792278	5.81326541490194	6.39076149641515	5.91918815582574	-0.261359705698856	0.301659530788641	0.613778799474163
Merged-chr13-44937216-2	chr13	44937116	44937316	+	693.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 7 of 9)	MTD|LTR|ERVL-MaLR	64880.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	3.03451131011427	3.34199660133999	3.10035073414279	3.04388892181097	3.30901174007963	3.33453591242067	3.26654200118418	3.33202883325743	0.667682200206244	0.216367038869723	0.522911498699851
Merged-chr7-90214712-2	chr7	90214612	90214812	+	940.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50720.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	3.61923817611867	3.10838445407159	3.61976489458602	3.34861080368723	3.52434068375151	3.7901477797464	3.65461526239607	3.61763465368157	0.692660400514576	0.181196767100967	0.477681655017768
Merged-chr5-114567277-4	chr5	114567176	114567376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004180)	promoter-TSS (NM_001004180)	-975.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	7.17025212388657	7.42911454632415	7.21561322030228	6.96109846140704	6.98580575061071	7.30257450210538	6.90263632422632	7.16646670450571	-0.141496620677495	0.496822428537742	0.766734392283248
Merged-chr11-50161738-3	chr11	50161612	50161812	+	856.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 16 of 20)	intron (NM_029745, intron 16 of 20)	-13139.0	NM_026543	68067.0	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	3.67421553217734	3.57779187067119	3.51007055213673	3.22788455225229	3.95919943542802	3.79422586765228	3.43781088968238	3.72305571078771	0.79031897393699	0.120231255982799	0.383810790826571
Merged-chr12-21417221-3	chr12	21417117	21417317	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011739, exon 1 of 5)	5' UTR (NM_011739, exon 1 of 5)	219.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	5.90696207992712	7.01290565815611	6.56302289190217	6.61018570466406	6.54331509218625	6.75499224577164	6.48074419227093	6.44118029985043	-0.0404555739809604	0.882631654229362	0.955787048978286
Merged-chr4-46277452-3	chr4	46277348	46277548	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66746.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	5.44271996926234	5.56713496548786	5.55739000219786	5.96146073158757	3.57855276873074	3.91447757194817	3.90739635482809	3.92112174813288	-4.97447376415598	9.82772658697085e-18	2.43737892241811e-15
Merged-chr14-66231087-4	chr14	66230969	66231169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-17245.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	7.80575676646937	8.14461720839857	7.76072233132725	7.65709460900351	7.89878070044287	7.84006742102497	7.69117216294564	7.23666751822242	-0.206038581357963	0.333819929038167	0.644557528456154
Merged-chr10-7212771-4	chr10	7212674	7212874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172546)	promoter-TSS (NM_172546)	-537.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	7.78796185842523	7.98784678177379	7.39979089774291	7.37316433893628	7.39559038206259	7.54713826096757	7.14744226479579	6.88798467653213	-0.520719160863962	0.0262113104233599	0.153378400577469
Merged-chr7-18925354-4	chr7	18925254	18925454	+	804.954163	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029877)	promoter-TSS (NM_001029877)	-534.0	NM_001029877	384569.0	Mm.262724	NM_001029877	ENSMUSG00000030411	Nova2	Gm1424	neuro-oncological ventral antigen 2	protein-coding	4.09681220309711	4.51716052273082	4.20202946030905	4.17251105869339	4.59260814322635	4.51928844479302	4.49281294749859	4.76087092065173	0.784307334756513	0.0381273190119652	0.195565643867743
Merged-chr13-98768510-3	chr13	98768384	98768584	+	932.666626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 8 of 25)	intron (NM_172591, intron 8 of 25)	46965.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	3.77931160401735	3.82395342184657	3.88466367203614	4.40224642192784	4.08627947653791	3.72213075122478	3.7651868073131	3.88243209137337	-0.382083460219106	0.437080917797299	0.725451385050576
Merged-chr16-91737067-4	chr16	91737008	91737208	+	924.3916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	7737.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	4.4213156858172	4.3619924997078	4.63495064233374	5.15026557891278	4.56729432209497	4.72778175406148	4.4910679898715	4.67053510985726	-0.197298746005589	0.627105296355597	0.841002239063709
Merged-chr7-79732890-3	chr7	79732787	79732987	+	949.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113471)	promoter-TSS (NM_001113471)	-111.0	NM_001113471	103968.0	Mm.254917	NM_175640	ENSMUSG00000030546	Plin1	6030432J05Rik|Peri|Plin	perilipin 1	protein-coding	3.59152708279613	3.79967764337958	3.88567140383788	3.82548247779144	3.50906287288569	3.39628201309141	3.52264987534553	3.64387086744478	-0.833742942432655	0.0867608584042453	0.321232608409464
Merged-chr5-34187224-4	chr5	34187164	34187364	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010753, intron 2 of 5)	CpG	446.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	4.62277028542055	4.42567176308505	4.8798870508115	4.65075257616089	4.46247066414847	4.71547269674984	4.64162388789685	5.03189741684853	0.151035261501339	0.681431674790052	0.869396400428053
Merged-chr13-81783195-4	chr13	81783119	81783319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007684)	promoter-TSS (NM_007684)	-28.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	8.36329511065504	8.29298819224401	8.31999799180501	8.49675661468438	8.67017030297293	8.74460384663466	8.69665781944857	8.53286275607823	0.361589071492654	0.0168418417135299	0.11381234703573
Merged-chr7-73535610-2	chr7	73535510	73535710	+	864.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	6136.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	2.75764637012401	2.86366775240206	2.81911801743046	2.33729984777827	2.71301918343057	2.58598971691102	2.74783172810198	2.81757111324356	0.0559844712208149	0.936606198885229	0.977055763832964
Merged-chr6-142571391-3	chr6	142571285	142571485	+	916.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008428, exon 1 of 3)	5' UTR (NM_008428, exon 1 of 3)	229.0	NM_001330363	16523.0	Mm.1482	NM_008428	ENSMUSG00000030247	Kcnj8	AI448900|Kir6.1|gnite|slmbr|sltr|uKATP-1	potassium inwardly-rectifying channel, subfamily J, member 8	protein-coding	3.75305349538384	3.82838394203584	4.15795446813815	3.96490195850153	3.57398728150279	3.701779464499	3.62953984686739	3.80324054241012	-0.775239704388506	0.0966499516980973	0.340574096588254
Merged-chr15-31531103-4	chr15	31531005	31531205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172606)	promoter-TSS (NM_172606)	-68.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	7.69586752022905	7.81846312126748	7.27810327974738	7.68328140310537	7.92403162477602	7.86631674015322	8.02249986813978	7.77983042095769	0.3427436298138	0.0646554770660335	0.270299083876612
Merged-chr7-121446432-4	chr7	121446319	121446519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081327, intron 1 of 1)	intron (NM_001081327, intron 1 of 1)	54123.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	6.73936457340052	6.5643568373602	6.96259639687614	6.89261887045283	6.61643240171129	6.13595186482148	6.8536868308876	6.58407867517316	-0.319729650776739	0.177206614615023	0.472449504292692
Merged-chr19-56600939-4	chr19	56600840	56601040	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52679.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	6.09231608513472	5.60777537847832	6.14941447592662	5.99331545863259	5.79027939107119	5.51128981136884	5.96330073551178	5.45798330793957	-0.439330397960084	0.11867794999707	0.381113368050594
Merged-chr1-189922352-4	chr1	189922260	189922460	+	986.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026796)	promoter-TSS (NM_026796)	-69.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	6.58253279660688	6.55799563606881	6.1853513904187	6.96249505047093	5.55781070110673	5.62484358016914	5.98750735135682	5.39981118618644	-1.48441798473917	1.67737109611876e-07	6.86635429265696e-06
Merged-chr2-146386408-1	chr2	146386308	146386508	+	749.0	f0_balb.idr	intron (NM_001033348, intron 24 of 40)	intron (NM_001033348, intron 24 of 40)	125596.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	2.91318263526642	2.98758141414244	3.17171144823542	3.0915232671458	2.42075054610658	2.54141091192684	2.43116648492489	2.43536138243877	-3.98768768558784	6.30295484351782e-05	0.00137661252778998
Merged-chr5-135463581-4	chr5	135463504	135463704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-69058.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	5.74638605581051	5.55814276439916	5.6287827705027	5.85815999015214	5.28723074978688	5.1397339600708	5.22941213655821	5.49389018350205	-0.726870695082814	0.00988101166329846	0.0782249504150729
Merged-chr2-71041514-4	chr2	71041416	71041616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	L1MC3|LINE|L1	14090.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	6.11777699003915	5.46023744430093	5.2435014741012	5.68899787178136	5.97546639275511	5.85473588520225	6.12373746050043	5.84635583680762	0.466702829751249	0.112141267589695	0.370107260433389
Merged-chr2-93475203-4	chr2	93475110	93475310	+	975.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12260.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	5.26107612543031	5.1539552815755	4.60018386088797	5.26055439958586	5.7255336412049	5.37416974957602	5.20520870945453	5.28842766782389	0.574465916038002	0.0886839181905871	0.32504802332069
Merged-chr10-95514130-4	chr10	95514054	95514254	+	861.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-1008.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	3.48383205823514	4.06052010538461	3.93451250663379	3.35588614970544	3.71178765173082	3.53681924991916	3.41238978267978	3.75220502398202	-0.397365098810401	0.465758159649029	0.746200595247552
Merged-chr2-165997776-4	chr2	165997671	165997871	+	824.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	B1_Mur1|SINE|Alu	5134.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	4.48710888874774	4.53880410645848	4.68050677095317	4.5322764210887	4.40304482995265	4.48491183514853	4.3377663872342	4.64134897297988	-0.205848667103275	0.569232314713079	0.809360318990077
Merged-chr17-12371458-4	chr17	12371337	12371537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7172.0	NM_008877	18815.0	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	5.47800948508427	6.44237483320765	5.5636354730619	5.16549660644228	5.79024809761734	5.86859619776012	5.23073567349776	5.10712879101374	-0.357760827184228	0.363793036660262	0.66883005879845
Merged-chr4-133752869-8	chr4	133752732	133752932	+	930.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001080819, exon 1 of 20)	exon (NM_001080819, exon 1 of 20)	779.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	4.37454976081186	4.31544904389408	4.29500148665003	3.64307292627097	3.91231394455592	3.85685012344568	4.27489335071271	4.33290367017775	-0.181878663543666	0.704369951849815	0.881223937553884
Merged-chr10-57836279-3	chr10	57836189	57836389	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	41745.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	4.56083771568071	4.80566809621179	5.84533609835614	5.52157380423799	4.00622025552464	4.33974925657371	4.29635107632349	4.46545553535377	-2.12743207362401	2.90113938353618e-06	9.16658219545113e-05
Merged-chr15-102311662-4	chr15	102311558	102311758	+	963.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356312, intron 13 of 30)	PB1D10|SINE|Alu	-14458.0	NM_027044	56612.0	Mm.158264	NM_020031	ENSMUSG00000001289	Pfdn5	1190001O17Rik|1700010A06Rik|D15Ertd697e|Eig1|MM-1	prefoldin 5	protein-coding	4.67608429389739	5.00888571638989	4.58834746367285	4.92061280048171	5.21579993863074	5.08422196768463	4.95638427458648	4.97716113059367	0.482077237893554	0.145280082359715	0.424709585455561
Merged-chr6-127258872-4	chr6	127258765	127258965	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49102.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	5.26743347113733	5.11116313813668	5.49558520494226	5.72375695997008	5.04908177128474	5.50281043241645	5.21104901921935	5.13388963591326	-0.37785626947676	0.239988357402451	0.550432792793357
Merged-chr14-52316053-5	chr14	52315911	52316111	+	831.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015772, intron 1 of 1)	intron (NM_015772, intron 1 of 1)	312.0	NM_001244916	50524.0	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	spalt like transcription factor 2	protein-coding	2.8536305301822	2.81173113206502	2.85398606615734	2.72865643007002	2.76904165372545	3.02320064929002	2.64766629335044	2.91257833971839	0.157870667389024	0.799689059808943	0.922657550303479
Merged-chr4-12499752-4	chr4	12499636	12499836	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-327721.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	5.06613137491487	4.57258788084479	5.09881251394206	5.44246033332548	4.54955161980402	5.06976030917062	5.00967252558993	4.92775250380857	-0.389753421124689	0.300781748548328	0.61265829388815
Merged-chr3-21806652-4	chr3	21806555	21806755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-269997.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	6.46978482320806	6.03957239537382	6.25177345719224	6.39909020794636	6.09454813119824	5.85898883612201	5.9093768666698	6.06952465167014	-0.478324187394748	0.0486730392508592	0.22783230664922
Merged-chr13-119309440-4	chr13	119309360	119309560	+	738.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	99551.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	3.73785369853514	4.04934502114278	3.95718400143106	4.1603153954969	3.96720735740112	4.17763806620976	4.1681441339211	4.00425299856574	0.207280252926165	0.632408112728984	0.843894509963
Merged-chr3-14912184-3	chr3	14912091	14912291	+	855.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25903.0	NM_009801	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	4.14696248543675	3.88937145423061	4.85061152862851	4.86695894259522	4.16747234561002	3.73353554862959	4.0281867757911	4.32865298000901	-1.03176618449811	0.0427154217715595	0.210104820772217
Merged-chr11-115814871-4	chr11	115814765	115814965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029557, intron 1 of 10)	CpG	126.0	NM_029557	76265.0	Mm.275438	NM_029557	ENSMUSG00000020781	Tsen54	0610034P02Rik	tRNA splicing endonuclease subunit 54	protein-coding	5.37039944106952	5.98198499913562	5.79973705902613	5.09285808674494	5.49093804603932	5.77896094428886	5.4062263697473	5.96508597712141	0.12853444320592	0.700943649894067	0.879454675268923
Merged-chr12-57282181-3	chr12	57282067	57282267	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164370, intron 1 of 9)	intron (NM_001164370, intron 1 of 9)	51742.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	3.9513128740559	4.08054517133012	4.13946887067855	4.37609228792092	3.70572524607077	4.02201858139752	3.88466752888026	3.99904776360969	-0.706231203661904	0.111021286429017	0.368134917857588
Merged-chr18-14657587-4	chr18	14657492	14657692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009280, intron 3 of 10)	intron (NM_009280, intron 3 of 10)	25322.0	NM_001161369	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	5.03383244627377	5.40922045123224	5.48957356637877	5.09316898779621	5.10744473084786	5.17532825504673	5.30014347282313	5.35161922766089	-0.0525388222019551	0.864087616829875	0.948954560889149
Merged-chr10-13300765-1	chr10	13300665	13300865	+	1000.0	f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	23524.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	4.8781300751796	5.28436584677635	4.76315312679214	4.62260389752205	4.98783699205085	5.25470222907849	5.02644237584544	4.67682785227763	0.189010702320468	0.599848253882112	0.826616767892885
Merged-chr19-32176103-3	chr19	32175984	32176184	+	855.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	MLT1C|LTR|ERVL-MaLR	34929.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	3.20724692620394	4.16306440256607	3.45776580997026	3.44865266698851	3.05083664598278	3.51700844538279	3.32622538608407	3.51159731904777	-0.853015857349102	0.160944013761668	0.449414373343521
Merged-chr13-54301883-4	chr13	54301780	54301980	+	708.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69469.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	4.23387922122052	3.60228609735359	4.23456847784971	3.59434595406971	3.99218561356138	4.27584478206597	3.98979483829535	4.3123667306173	0.538771133175611	0.26499893195164	0.576865832081038
Merged-chr10-118085464-5	chr10	118085343	118085543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56344.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	7.89564870766978	7.86978351382459	8.53045838932644	8.37592164713114	7.87465292551354	7.59662742666071	8.10489954567004	7.81571876630001	-0.439351963526164	0.0419407841910484	0.207471198688904
Merged-chr9-106566619-3	chr9	106566513	106566713	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	4354.0	NM_026090	67320.0	Mm.335431	NM_026090	ENSMUSG00000041009	Iqcf4	1700042N06Rik|mtIQ1	IQ motif containing F4	protein-coding	3.0745493319646	3.21461292117497	3.34960526575877	3.0810907971899	2.97488286655462	2.98509420467076	2.86913376860082	3.29726821658484	-0.565801838271558	0.341032181273515	0.650176232245011
Merged-chr11-84354559-4	chr11	84354460	84354660	+	843.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133360, intron 43 of 53)	intron (NM_133360, intron 43 of 53)	158941.0	NM_019816	56321.0	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	4.54719488135765	3.84679202465786	4.44066093883541	4.223727119347	3.96925127905888	4.17466964421418	4.0817905447995	4.09689230287517	-0.521758711398638	0.232029203930432	0.541621692185733
Merged-chr5-99339890-4	chr5	99339756	99339956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-86929.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	8.23197167421403	8.39822922607659	8.71984183965634	8.77993902863325	8.31105250895915	8.3802395546555	8.5459532663161	8.58446154417889	-0.124987818004309	0.497719249934593	0.767160446248674
Merged-chr5-142901589-4	chr5	142901457	142901657	+	750.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5197.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	3.75206984627728	3.86899861044417	3.63931890767333	3.23803452055818	4.04337427767066	4.33431347391651	3.78966311701712	3.75043799803723	1.04205954037549	0.039935689831295	0.201587296397542
Merged-chr10-19548218-4	chr10	19548119	19548319	+	992.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-43730.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	5.36747911092004	5.26538194246266	5.36840809383723	5.28259136501695	5.27693749525848	5.00447596191505	4.99640089288054	5.15464616382541	-0.358680547291509	0.226560743166971	0.53520075526854
Merged-chr8-73324512-4	chr8	73324401	73324601	+	900.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	29039.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	3.6086195451214	3.598526895202	3.99278603833476	3.88908894958635	4.00874882889256	3.79151306989325	4.15047566920893	4.42704756803954	0.878697529101975	0.0616940434389945	0.262771823264618
Merged-chr5-130613773-1	chr5	130613673	130613873	+	592.0	f0_c57.idr	intron (NM_021371, intron 2 of 5)	MTD|LTR|ERVL-MaLR	164981.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	3.31541816410297	3.14516965373062	3.3158435177595	2.86661286263143	3.62106069204754	3.66840924242024	3.9715967086028	3.54552395893855	1.94242880735637	0.000367844951891165	0.00599012487546585
Merged-chr2-10079759-1	chr2	10079659	10079859	+	804.333313	f0_balb.idr	promoter-TSS (NM_025280)	promoter-TSS (NM_025280)	751.0	NM_020615	11949.0	Mm.12677	NM_020615	ENSMUSG00000025781	Atp5c1	1700094F02Rik|Atp5f1c	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	protein-coding	3.99615691350969	4.144337961476	4.08996754028273	4.10834406101703	4.07790112549442	4.01714171628519	3.77301506090698	3.89400654014578	-0.368823966426086	0.386129758446398	0.687471231171812
Merged-chr9-57907387-2	chr9	57907287	57907487	+	839.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEd|LINE|L1	-3599.0	NM_027086	69459.0	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	3.60365702567876	4.13803400093838	3.60412013234138	3.37688568967467	4.57245926418293	3.72511773741155	3.76188885883949	3.92839512832891	0.933187368005641	0.086259807916911	0.320185074255691
Merged-chr7-6283759-4	chr7	6283646	6283846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2834.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	6.12317733017157	6.40174126543095	6.48071584595647	6.30026610785212	6.70934558918317	6.44304243065618	6.46382429477405	6.20310748203413	0.217302502546002	0.352138715892901	0.659341882376452
Merged-chr2-177464863-3	chr2	177464755	177464955	+	827.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177568, intron 1 of 3)	intron (NM_001177568, intron 1 of 3)	113.0	NM_001177568	628308.0	Mm.460436	NM_001177568	ENSMUSG00000078866	Zfp970	Gm14420	zinc finger protein 970	protein-coding	3.80010597608359	3.74220519464786	3.99106139277325	3.56661022268092	3.68952867293922	3.69594149457052	3.67922420424666	4.19158103291389	0.168601219730081	0.727247681460518	0.89142174034391
Merged-chr14-54713088-4	chr14	54713032	54713232	+	929.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207131)	promoter-TSS (NM_207131)	-958.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	4.03719162598839	4.46620264039965	4.51248676244995	4.37442642140496	4.31500032693057	4.05181708737699	4.07197666437833	4.0354700637948	-0.567072212242241	0.173275926399047	0.467288291473735
Merged-chr17-88403490-3	chr17	88403389	88403589	+	898.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37215.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	3.06058450381778	3.53967582385896	3.1785199289095	3.26899154183587	2.7651455150009	2.97054391658707	2.92278957064768	2.99656253335752	-1.57158432952866	0.0121486549738271	0.0907145708096754
Merged-chr3-137854083-4	chr3	137853960	137854160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10427.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	5.6539889682614	5.23707217874879	5.54891845257583	5.27282645609896	6.04318173005282	5.38308492115353	6.01399958640633	5.72498522700287	0.673648192144387	0.0229225234027732	0.140071166145879
Merged-chr13-52583078-4	chr13	52582976	52583176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198977)	promoter-TSS (NM_001198977)	-361.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	6.8893929612927	6.99487603209566	7.05267963117593	7.13661528418859	6.87258459523135	6.64612630121399	6.90761000255347	6.60349131901363	-0.361057516600986	0.0735419439796946	0.292128022240676
Merged-chr5-102030064-4	chr5	102029970	102030170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	39851.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.47749457644499	5.27810813459735	5.53342857221918	5.74731078463615	5.48055805729806	5.34025565552661	5.53210813903171	5.70435518981009	-0.0259296016223097	0.928132289214159	0.973863292981759
Merged-chr17-70852368-4	chr17	70852280	70852480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164075)	promoter-TSS (NM_001164075)	-646.0	NM_001164075	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	7.02349391022491	7.51839200034553	7.43476852343305	7.03003685683821	7.24492762172669	7.36835162513742	7.0513253583068	7.04494753992751	-0.110229839536758	0.606958430890277	0.829739641131306
Merged-chr6-21949998-4	chr6	21949916	21950116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311061, intron 1 of 11)	CpG	401.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	8.2721201414947	8.37873316474366	7.94041602089879	8.31203783197226	8.25200884709199	8.45694734284405	8.6653963191673	8.33496304270606	0.245749320448529	0.170699423353425	0.463921931697421
Merged-chr2-166699566-7	chr2	166699469	166699669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	14263.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	5.99331016197639	5.74902630445762	6.07578403519297	5.32726484535273	5.96679670364272	5.98960954171777	5.98437242861497	5.90308608244077	0.267722815726097	0.346502276424891	0.654729443506499
Merged-chr18-54902405-1	chr18	54902305	54902505	+	1000.0	f0_c57.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	87775.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	4.9603559809685	4.96360341086932	5.06928692747839	5.04735398305061	5.54250600456802	5.17450677791527	5.32073251079236	5.28712221520569	0.62179703152847	0.0364559404888251	0.189921495136799
Merged-chr8-39006771-1	chr8	39006671	39006871	+	696.0	f0_balb.idr	intron (NM_001357305, intron 1 of 8)	intron (NM_001357305, intron 1 of 8)	926.0	NM_001357306	80286.0	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	3.29823693734474	3.0242847699531	3.3552769738654	3.5001909672363	3.29183290884874	3.46867095027207	3.39574057943056	3.23786101096531	0.119007192011188	0.829091454700042	0.934340821932748
Merged-chr10-75182623-3	chr10	75182527	75182727	+	780.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081412, exon 23 of 23)	3' UTR (NM_001081412, exon 23 of 23)	-29446.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	3.4864970823048	3.69609279394184	3.60289174768682	3.40543855738466	3.83836825047527	3.54046186373376	3.83698860565328	3.8965030614218	0.753469543725088	0.112400682779215	0.370636903527368
Merged-chr10-77917022-6	chr10	77916850	77917050	+	915.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 29 of 33)	RLTR11A|LTR|ERVK	-14414.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	3.51289880173167	3.43573611365484	3.76399132241465	3.42767791441814	3.52556138066136	3.51196816432014	3.49974451821349	3.61752901534784	0.019540008976994	0.968353183945735	0.988694268692349
Merged-chr17-36262028-4	chr17	36261914	36262114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357889)	TTS (NM_001357889)	-4168.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	5.69929205958751	5.59762590667752	5.55871947898124	5.82175352898633	6.31190626089943	6.16195379047874	6.27394396212653	5.84766429091516	0.761985252339819	0.00306110782751816	0.0325106824910347
Merged-chr9-57440124-4	chr9	57440016	57440216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357914)	promoter-TSS (NM_001357914)	-2.0	NM_001357916	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	7.50141643512689	7.54958629781972	7.13052165143948	7.0660388525974	7.39954857376185	7.30797623846844	7.3440103365114	7.34563901226983	0.0401214162352494	0.841390907147151	0.939706323037517
Merged-chr6-123185049-4	chr6	123184951	123185151	+	719.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004159, intron 3 of 5)	Lx8|LINE|L1	12028.0	NM_001004159	381809.0	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	3.36825844344895	3.58183056558772	3.73565368421145	3.41527642255713	3.63225922711989	3.28503036065056	3.71888943096783	3.24016205793302	-0.121349891124812	0.821035105013297	0.931480092500087
Merged-chr12-87147127-4	chr12	87147034	87147234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010363)	promoter-TSS (NM_010363)	-31.0	NM_001252555	14874.0	Mm.29652	NM_010363	ENSMUSG00000021033	Gstz1	MAAI	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	protein-coding	5.74477179778313	5.4979964595153	5.31568074516195	5.66895511873789	5.78233065825239	5.59255381888605	5.93760229742732	6.11697280600733	0.488553281927385	0.0771388476797358	0.300331803905257
Merged-chr9-40117038-4	chr9	40116931	40117131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11008.0	NM_146855	258854.0	Mm.377722	NM_146855	ENSMUSG00000049073	Olfr985	MOR171-4	olfactory receptor 985	protein-coding	5.4348861925925	5.10099370729229	5.80841156935916	5.89046101265096	5.31295224979077	5.32453824811683	5.56998862160164	5.40281747928962	-0.353376998275483	0.265962088092025	0.577655177233683
Merged-chr2-153239213-4	chr2	153239120	153239320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018807, intron 1 of 2)	intron (NM_018807, intron 1 of 2)	2138.0	NM_018807	54711.0	Mm.103199	NM_018807	ENSMUSG00000051413	Plagl2	AU018672|AW552839|mKIAA0198	pleiomorphic adenoma gene-like 2	protein-coding	6.20379923410465	6.55077703793835	6.29779221037389	6.05594933915008	5.96099980663477	6.28053503794303	5.8953058600457	6.05778410326358	-0.354837120419101	0.15751285287823	0.444059226672193
Merged-chr7-132304207-4	chr7	132304114	132304314	+	939.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 1 of 7)	MTEb|LTR|ERVL-MaLR	-11450.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	4.31353923328012	4.25925032999802	4.11162763376849	4.26772350127377	4.57093711041202	4.44405787234488	4.58508751546965	5.01407055224629	0.969278081095773	0.01113736826608	0.0851683214236473
Merged-chr13-41018572-3	chr13	41018482	41018682	+	721.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360770, intron 3 of 4)	intron (NM_001360770, intron 3 of 4)	2332.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	3.19626543228433	2.98076950676033	3.02699319567878	3.0393808227954	3.18017406894203	3.00673282663891	2.95535095141795	2.9636984113617	-0.10157283769044	0.860583528469744	0.947291826627875
Merged-chr4-89265712-4	chr4	89265586	89265786	+	966.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	16506.0	NM_001040654	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	4.97228767735244	4.55603981956126	4.31465450055833	5.14961567651706	4.81715067294772	4.6913090189397	4.91640446791083	4.90372906505123	0.0542482508020738	0.888780520255934	0.958331420576655
Merged-chr5-105498928-3	chr5	105498827	105499027	+	960.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-20544.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	4.46694025329906	4.63383981099077	4.61483789790122	4.9805888877942	3.9318748574643	3.74620670338227	3.98696697083404	3.82348751506365	-2.10900934973636	2.03078788832821e-06	6.62931538308749e-05
Merged-chr1-92082976-4	chr1	92082870	92083070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 2 of 26)	intron (NM_207225, intron 2 of 26)	97371.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	6.87807120954829	6.60432221390814	6.96674519435163	7.01276792902524	6.67980082163774	6.32506740655788	6.75069242683602	6.55151477499732	-0.408833136782441	0.0634603781138073	0.267375769726689
Merged-chr15-36931634-4	chr15	36931535	36931735	+	881.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	75767.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	4.20403376306029	4.03072732251879	3.9114931566224	3.99869264969988	4.09484689974475	4.14061876432465	4.14182780546415	4.43977038646069	0.440862151473919	0.282608541122784	0.594770434571737
Merged-chr11-63135848-4	chr11	63135748	63135948	+	979.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302255, intron 3 of 4)	intron (NM_001302255, intron 3 of 4)	3045.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	5.53684090697927	5.52980711816806	5.64133737616705	5.72552495307209	5.32922002547037	5.47840536045623	5.17484648934796	5.75566236886581	-0.294487251607283	0.304388024367513	0.616988329768724
Merged-chr4-129365340-4	chr4	129365238	129365438	+	830.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028603, intron 2 of 4)	ID4_|SINE|ID	12690.0	NM_028603	73680.0	Mm.32997	NM_028603	ENSMUSG00000028807	Zbtb8a	2410081M15Rik|AI480941	zinc finger and BTB domain containing 8a	protein-coding	3.75061720277829	3.90045240135191	3.64174836349556	3.95250494245362	3.77545177708054	3.6379787499113	3.97167683833429	3.74904458725346	-0.110682538195011	0.810649912706409	0.926854276252049
Merged-chr11-90245023-4	chr11	90244920	90245120	+	816.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4456.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	4.77201123223739	4.65303520149722	4.7011261193607	4.85524445628428	4.38364214308958	4.58873053292033	4.5235981721937	4.40994507839356	-0.623522672464744	0.0770411990508601	0.300066512024141
Merged-chr12-112707183-4	chr12	112707088	112707288	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14986.0	NM_001024602	217882.0	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	5.24127171866875	5.51209974926213	5.07668535159457	5.46160783651429	5.2519934241491	5.18124157615609	5.12048729041828	5.20717193519296	-0.281777896198441	0.346328414338824	0.654632117521103
Merged-chr11-5790135-4	chr11	5790034	5790234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146309, intron 1 of 12)	L2b|LINE|L2	1651.0	NM_013810	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	5.71667117589445	5.47057973563273	5.48679966454681	5.83215393214151	5.28681933881357	5.34823101589412	5.56644201861986	5.5379957786713	-0.369043736331195	0.191581756621533	0.490975870844874
Merged-chr12-75413108-4	chr12	75413019	75413219	+	903.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175644, intron 2 of 2)	L2a|LINE|L2	3662.0	NM_175644	217674.0	Mm.252250	NM_175644	ENSMUSG00000048982	Gphb5	OGH|Zlut1	glycoprotein hormone beta 5	protein-coding	4.36946383029617	3.92855301883494	3.91640017047064	4.33211789952258	4.10028370862189	4.66249922948168	4.54506320705889	4.66893940335469	0.809379723715226	0.0626494189920887	0.265199107608557
Merged-chr15-100635405-3	chr15	100635298	100635498	+	855.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001285414, exon 1 of 3)	5' UTR (NM_001285414, exon 1 of 3)	161.0	NM_001285414	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	3.27332017095703	3.36176225912254	3.44314680320423	3.60895890619978	3.29248342811254	3.18854823639397	3.62228898114529	3.14582297008941	-0.383428954942246	0.488604142574479	0.761377570765248
Merged-chr9-55250611-3	chr9	55250498	55250698	+	919.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	intron (NM_032002, intron 3 of 7)	33027.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	3.56360103301864	3.64118918097396	4.05928738958809	3.79435908432669	3.67691555582747	3.8529446287839	3.66513663435106	3.92741598493815	0.0113399669796775	0.980860100987683	0.99298505811204
Merged-chr7-118742582-4	chr7	118742463	118742663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 1 of 30)	intron (NM_027815, intron 1 of 30)	2292.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	6.7583698237102	6.87440715933106	6.7307039045712	6.69785000038525	6.7674712123929	6.55781837727675	6.98107659796795	6.46783942524092	-0.0724656181761523	0.736430754482627	0.895993666633144
Merged-chr6-146638678-4	chr6	146638581	146638781	+	847.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3898.0	NM_025315	108098.0	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	3.76997564589895	4.06564669576732	3.90287718092716	4.27682146297324	4.79156120126745	4.60032960936094	5.10594951227477	4.7268939290408	1.76961670231507	5.7892729456451e-05	0.00128263293640539
Merged-chr17-70958460-3	chr17	70958370	70958570	+	951.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	32046.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	4.28560601041336	3.88779983031363	3.82326121454128	3.46558116275536	4.66533603599514	4.22864655484559	4.46466404863066	4.59015909319739	1.56053551535762	0.000588425723382961	0.00880646647701342
Merged-chr12-57237197-4	chr12	57237097	57237297	+	899.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164370, intron 1 of 9)	Lx9|LINE|L1	6772.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	4.12838077975224	4.00935259952636	4.26706689931265	4.84679169259111	4.17474780402267	3.85774463085562	4.24789420359911	4.22005813975735	-0.588624230466659	0.209522575011904	0.514046766302012
Merged-chr14-20707516-4	chr14	20707388	20707588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252081)	promoter-TSS (NM_001252081)	-64.0	NM_001252081	268721.0	Mm.275082	NM_027996	ENSMUSG00000021819	Zswim8	2310021P13Rik|4832404P21Rik|Kiaa0913|mKIAA0913	zinc finger SWIM-type containing 8	protein-coding	6.9714250015534	7.3624830722975	7.15528245882783	6.88962881322878	7.07069379852145	6.99742594263039	7.20655363471918	7.33910138349902	0.0789215388075352	0.703696012062266	0.880845147062817
Merged-chr14-93654943-2	chr14	93654845	93655045	+	782.0	f0_balb.idr|f1_balb.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	235724.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	4.56715147562557	4.4499645943003	4.33910722031259	5.01787872932505	3.75679322283775	3.83299475249611	3.88016353585036	3.70658112206297	-2.24229497241319	1.58766867230437e-06	5.3205587771164e-05
Merged-chr11-101553783-4	chr11	101553685	101553885	+	935.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008676, intron 1 of 23)	intron (NM_008676, intron 1 of 23)	1131.0	NM_001252223	17966.0	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding	4.90386485474903	4.93980693344931	4.54165404011346	4.45722884710594	4.82714232074744	4.39121443007489	4.13715591941607	4.65882049820163	-0.391460273070509	0.338646267120292	0.648109446558985
Merged-chr4-59441449-4	chr4	59441285	59441485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-2752.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	6.07902026095133	5.90241957915418	6.08009171827084	6.05812508211228	6.06398148799931	5.85697486196609	5.89987835440421	5.97048394062533	-0.117896327352551	0.619653738337894	0.836757668060802
Merged-chr10-117375315-4	chr10	117375208	117375408	+	796.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013391, intron 1 of 9)	intron (NM_001013391, intron 1 of 9)	1665.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	3.85880924686658	4.09461803016335	3.51278679991403	3.73282808563012	4.04330202925235	3.9280113500133	4.0722681597695	3.80539117193479	0.428752514674267	0.353331813311504	0.660177666767879
Merged-chr16-65567452-3	chr16	65567309	65567509	+	882.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-4712.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	3.19391736428716	3.03646069147972	2.99806018946473	3.36423071590815	3.33801752031143	3.36608674732898	3.54559489968342	3.25206023291283	0.753681181437238	0.183537089067639	0.480589084207321
Merged-chr1-128747495-3	chr1	128747352	128747552	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-155153.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	5.39976514471096	5.32066702443374	6.53872171985077	6.33365715383076	3.82670305203693	3.9852853542307	4.24294536230439	4.37878001157047	-4.06573759257113	1.51110906112242e-08	7.74364520242137e-07
Merged-chr3-51226797-4	chr3	51226608	51226808	+	887.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009834, intron 1 of 2)	intron (NM_009834, intron 1 of 2)	2261.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	2.88658362119193	2.80510745774402	2.95304977774073	2.9985796838558	2.98909349123227	3.24548132388016	3.1753934164813	3.18676302523835	0.933041200840781	0.108919597725356	0.364339867780117
Merged-chr5-149089110-4	chr5	149089022	149089222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36065.0	NM_010439	15289.0	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	6.52774949738586	6.50731790656532	7.083216300173	7.19216361557136	6.94927939063559	6.75968690120889	7.25763597352032	7.01944513452708	0.183042267659459	0.464104183138958	0.745211298509957
Merged-chr16-4568142-4	chr16	4568048	4568248	+	807.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8428.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	3.69712364279223	3.30674563931484	3.47543637964022	3.7478165527336	3.73089340468186	3.59132790821532	4.0316254397222	3.58931435347462	0.522161650283371	0.306168408716043	0.618638025596462
Merged-chr6-29773248-3	chr6	29773152	29773352	+	692.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	4809.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	3.71765197908034	3.53244073357032	3.71818008654306	3.76901446476744	3.74925957292259	3.61342617047866	3.54386829159439	3.76547196559727	-0.0516725860998103	0.912487065087632	0.967207481621882
Merged-chr9-99074656-4	chr9	99074559	99074759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 8 of 23)	B4A|SINE|B4	-38969.0	NM_001080776	382097.0	Mm.293727	NM_001080776	ENSMUSG00000044860	Gm1123	AV052824|CLSP	predicted gene 1123	protein-coding	5.50070427053575	5.51134714647587	5.99527792086593	6.00919712112709	5.57747630611862	5.28279589923175	5.53000150748518	5.63396152696712	-0.458099054817919	0.117936871098309	0.379899015608749
Merged-chr13-45977100-4	chr13	45977020	45977220	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12129.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	4.58437877630422	4.733102506341	3.78846941541972	4.38599054466419	4.73862540167374	4.21827698076664	4.40640871055004	4.42382698550911	0.109209399495848	0.810153497383925	0.926776956547369
Merged-chr5-36465526-2	chr5	36465426	36465626	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126488)	promoter-TSS (NR_126488)	341.0	NM_024478	17713.0	Mm.21535	NM_024478	ENSMUSG00000029198	Grpel1	AA408748|mt-GrpE#1|mt-Grpel1	GrpE-like 1, mitochondrial	protein-coding	4.1846711134955	4.24585269549212	4.08866756368555	4.22180689554969	4.18255351489846	4.16140373588843	4.33911381254355	4.43497371195551	0.224308484507145	0.566109935841231	0.807783748011785
Merged-chr2-136892893-4	chr2	136892782	136892982	+	957.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028834, intron 1 of 7)	intron (NM_028834, intron 1 of 7)	714.0	NM_001355669	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	4.86150396142372	4.34187039498196	4.82970076239643	4.69331654191894	4.58831272657406	4.3292721218833	4.51197273581402	4.57086700306554	-0.404129896733967	0.278058018465579	0.590186124835589
Merged-chr7-30559265-4	chr7	30559124	30559324	+	847.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290569, intron 1 of 8)	intron (NM_001290569, intron 1 of 8)	422.0	NM_029377	75660.0	Mm.379242	NM_029377	ENSMUSG00000036845	Lin37	1810054G18Rik	lin-37 homolog (C. elegans)	protein-coding	4.14832955460559	3.73708548167521	3.41756648181996	3.06947952164466	3.71693611020942	3.66211325634651	3.88587574855734	3.6539462251667	0.22842882384579	0.6909506512564	0.874238772855861
Merged-chr7-25781633-4	chr7	25781559	25781759	+	889.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 4 of 19)	intron (NM_009465, intron 4 of 19)	7074.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	4.30742270354023	4.28879562678859	3.9448497118982	4.05216910283756	4.18928314916544	4.06732928191542	3.76349626154036	4.09097053817597	-0.286473356410211	0.509111560557545	0.773899579952911
Merged-chr13-9883220-4	chr13	9883125	9883325	+	897.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 4 of 4)	intron (NM_033269, intron 4 of 4)	-117904.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	4.8492987913884	4.83304648346755	4.78002570756082	4.84980255119494	4.17915486218959	4.58548774107641	4.95475072669293	4.45070571675548	-0.568679750136878	0.134164741237254	0.407825042139404
Merged-chr3-10012501-4	chr3	10012408	10012608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001272098)	promoter-TSS (NM_001272098)	-77.0	NM_001272097	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	6.65112062244416	6.35190926805736	6.65229348765736	6.54408492403689	6.35601134391232	6.5068785182346	6.69082575633495	6.85419937384609	0.0824671630240451	0.715179170194772	0.886010584897636
Merged-chr2-124264538-3	chr2	124264430	124264630	+	973.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 2 of 20)	intron (NM_001290997, intron 2 of 20)	-42172.0	NR_040612	75946.0	Mm.415059	NR_040612	ENSMUSG00000086954	4930583P06Rik	-	RIKEN cDNA 4930583P06 gene	ncRNA	4.1376656958585	3.7470017199253	4.30447455293082	4.70864663104959	3.72788908741232	3.84581290544275	4.11945430890337	3.52688803667116	-1.22802187908636	0.0181625544815858	0.119991875389344
Merged-chr10-19850881-3	chr10	19850788	19850988	+	943.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029529, exon 1 of 2)	exon (NM_029529, exon 1 of 2)	571.0	NM_029529	76157.0	Mm.74324	NM_029529	ENSMUSG00000050473	Slc35d3	6230421J19Rik|Frcl1	solute carrier family 35, member D3	protein-coding	4.11833506939414	3.9418122800406	3.942255653289	3.74603168868698	3.53917164324904	4.06525843163369	3.77611223809187	3.73505006864657	-0.435733305778006	0.355767903627794	0.662460200186333
Merged-chr3-100534576-4	chr3	100534487	100534687	+	936.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-45395.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	4.72198143637376	4.4376932219975	5.4272771660795	5.51667453048093	4.96192163243299	4.86133897829887	5.47392925909832	5.47381642370532	0.199072526510349	0.636781426429248	0.846451769792625
Merged-chr16-33546565-4	chr16	33546464	33546664	+	876.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 3 of 11)	intron (NM_001083902, intron 3 of 11)	27969.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	4.46130240975054	4.31767151646726	5.48043314439462	5.3415504943297	4.64535405193997	4.59652895387238	4.61641238032281	4.20080314703454	-0.982458590696821	0.0331532697323183	0.178828174164647
Merged-chr2-158305903-2	chr2	158305815	158306015	+	746.25	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_008489)	promoter-TSS (NM_008489)	-578.0	NM_008489	16803.0	Mm.218846	NM_008489	ENSMUSG00000016024	Lbp	Bpifd2|Ly88	lipopolysaccharide binding protein	protein-coding	3.54321011884933	3.41344263423499	3.31300979861917	3.55453416463787	3.53154237177452	3.65943483107583	3.52951770755603	3.4878598017598	0.279565096785032	0.571087054077166	0.810348982482694
Merged-chr11-86358363-4	chr11	86358257	86358457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080931)	promoter-TSS (NM_001080931)	-832.0	NM_001080931	327987.0	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	7.23886825320084	7.37401962641181	6.6755989811576	7.08248558554859	7.3754983120211	7.29485786423584	6.89467203009686	6.97785720621997	0.0501675642841121	0.828188154030115	0.934077081535566
Merged-chr19-23038609-3	chr19	23038508	23038708	+	761.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102618.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	2.35468775436753	2.37861555481938	2.35486986297073	2.13840588628137	2.95606437274331	2.91667868038662	2.96555397467455	3.31767062965821	4.70970394221032	1.6895085361666e-08	8.58369222668113e-07
Merged-chr17-56442902-2	chr17	56442802	56443002	+	843.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 6 of 27)	intron (NM_001252455, intron 6 of 27)	19319.0	NM_001252456	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	3.25585656069664	3.24220787291669	3.31296667913217	3.24626467794759	3.22174858626381	3.36837462983836	3.40500358049833	3.06849149768236	0.027776054428167	0.958620768026226	0.985248919859626
Merged-chr6-108710125-4	chr6	108710021	108710221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49187.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	5.9506987547343	5.8737952830308	5.36440263447452	5.76867006835307	6.07766015867786	5.78744380059658	6.08058613089136	5.66100856238588	0.260730897535993	0.345280361447967	0.653596021599977
Merged-chr11-49082188-3	chr11	49082099	49082299	+	761.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271677, intron 1 of 2)	intron (NM_001271677, intron 1 of 2)	-4818.0	NM_001271676	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	4.17392103193951	3.72060593841681	3.91986556074971	3.75026522137503	3.98695738836642	3.5913568296744	3.8061922215035	3.65786289636719	-0.334005074957035	0.486682795416713	0.760334380170897
Merged-chr19-11060119-4	chr19	11060005	11060205	+	809.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9539.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	4.08393386988844	4.07837131291124	4.03651797056964	3.73224717373924	4.41498940810292	4.30176262972374	4.06674646661318	3.87866564227802	0.551922936299488	0.208599769534371	0.513005666160626
Merged-chr11-32300061-2	chr11	32299961	32300161	+	748.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175000)	promoter-TSS (NM_175000)	-8.0	NM_175000	216635.0	Mm.338482	NM_175000	ENSMUSG00000020295	Hbq1a	A230090E05Rik|Gm876|Hbq1|Hbqt2	hemoglobin, theta 1A	protein-coding	2.84450558057453	2.96337182074935	2.84483779085514	2.61124396219666	2.81891333769456	3.07998337273733	3.01506923609312	2.96769178274617	0.698309149878755	0.256184071904548	0.567800904689205
Merged-chr1-95528905-4	chr1	95528802	95529002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138692.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	6.51581213210451	6.20687742142533	6.82208313934017	7.22926275592641	6.12526793142507	6.29313826504795	6.43341936822553	6.3549122372929	-0.674482649663037	0.0157333898310025	0.108442621746967
Merged-chr7-114194991-4	chr7	114194903	114195103	+	964.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	59677.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	5.26191208966371	5.24128224319182	5.0749176802718	4.89153806767177	5.39031573496212	5.28196888535872	5.08323335380464	4.68097477595659	0.055959901536989	0.869056472918804	0.950890741040292
Merged-chr11-62575437-4	chr11	62575347	62575547	+	958.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011706, intron 1 of 15)	intron (NM_011706, intron 1 of 15)	961.0	NM_011706	22368.0	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	4.85254356352022	4.6044541366954	4.2934484048381	4.65907429797227	4.85141619957012	5.05875324581655	4.82989114552497	4.88450829094857	0.59033914254088	0.0894100622403511	0.32641528543909
Merged-chr17-65656971-3	chr17	65656879	65657079	+	809.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 6 of 6)	intron (NM_133685, intron 6 of 6)	-14775.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	3.61211772561466	3.3287604798589	3.9394272983817	3.87518402887191	3.38001888968824	3.61771714056195	3.48834978131365	3.5562831783952	-0.659497701650474	0.205634894372076	0.509339393343424
Merged-chr4-10962568-4	chr4	10962472	10962672	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45047.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	4.90539196237546	5.05790697991592	4.93966752335284	4.64511785630134	4.85102782248619	4.81899721270143	4.53703355258245	4.55457347233219	-0.372590265729637	0.291517141834084	0.603826639465961
Merged-chr11-32607507-4	chr11	32607381	32607581	+	973.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 12 of 18)	L1MD|LINE|L1	-35074.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	5.16500137120257	5.14738287829985	5.10046807625247	5.40340252725769	5.3097511967262	4.80216852981262	5.2894317669385	5.09701059600729	-0.135708159767394	0.669587317627054	0.86357079102718
Merged-chr9-78533472-4	chr9	78533388	78533588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51764.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	6.90867346866314	6.97366909096301	6.76655307918276	7.18505895322277	7.10298546979341	7.1398094932335	7.00308616592246	7.27721615217613	0.206674232135795	0.305478767715421	0.617899566472771
Merged-chr6-125353069-4	chr6	125352980	125353180	+	954.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	3357.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	4.57263717784213	4.38203067043686	5.00794229406594	5.17211839833033	4.75638180810269	4.46862743515981	4.8553119723474	4.69361621502281	-0.279161148305918	0.478429618464517	0.754532850325209
Merged-chr5-99459365-4	chr5	99459257	99459457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-206430.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.09916652976677	6.23157721568043	6.03979322119885	6.10452291677952	5.60799459051389	6.06196036552414	5.51257499075058	5.83460114789966	-0.575161675294141	0.0255195420045051	0.15060571099732
Merged-chr6-67041998-4	chr6	67041895	67042095	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040278, intron 1 of 6)	intron (NR_040278, intron 1 of 6)	-4588.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	5.57607969173929	6.18578899947842	5.2290973602818	5.06623380197564	4.91020056579052	5.89398222399612	5.44322332764451	4.65382610385582	-0.471511105919521	0.466987207432256	0.746690682851571
Merged-chr2-152737022-3	chr2	152736909	152737109	+	975.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010495, exon 2 of 2)	exon (NM_010495, exon 2 of 2)	758.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	3.87684831841839	4.16720833753465	3.87736975163394	3.93889605808973	4.35665342768679	4.35893335853502	3.97186185019038	4.73090534884764	1.02010318105663	0.0184622313121071	0.121397058897411
Merged-chr2-32089790-4	chr2	32089667	32089867	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5098.0	NR_151493	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	5.61377597776727	5.17555682137352	5.20620931804074	5.21288971554212	5.67663215150556	5.81199715595377	5.42804232905376	5.55991808243753	0.560922054585275	0.0509270969460272	0.23410874667536
Merged-chr10-37250230-3	chr10	37250144	37250344	+	931.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111318.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	3.47498533130127	2.9708188924779	3.47549297256921	3.66599712865895	2.97901334719475	3.36382996344087	3.29789307388379	3.4734399239408	-0.483909183060652	0.425320376723995	0.716846919275366
Merged-chr15-99065848-4	chr15	99065761	99065961	+	959.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B|LTR|ERVK	8808.0	NR_155351	102637490.0	Mm.421289	NR_155351	ENSMUSG00000116371	Gm34284	-	predicted gene, 34284	ncRNA	5.57755325872011	6.47625711672551	5.21153886534894	4.25096218754819	5.82128112449746	6.0174805319943	5.38015461424558	5.17215433743006	-0.00374914005859154	0.996019635044201	0.998543856884531
Merged-chr2-70702455-3	chr2	70702321	70702521	+	612.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40912.0	NM_027352	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	2.96619832160336	3.111381449749	3.19415738729395	2.85282703854501	2.6748319534111	2.79876454159007	2.89305000756203	3.24316464920664	-0.493666089212379	0.445043227952265	0.731198136541277
Merged-chr14-54733731-4	chr14	54733628	54733828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 6 of 10)	intron (NM_016972, intron 6 of 10)	-21554.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	6.09392102804774	6.43638372567158	6.94177153835758	6.81740873229089	6.73864910192071	6.59134082633546	7.04582154153005	7.07658735839568	0.363772932169886	0.164161847014343	0.454187278292608
Merged-chr2-122151364-3	chr2	122151257	122151457	+	761.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009735, intron 2 of 3)	intron (NM_009735, intron 2 of 3)	3670.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	3.7508482198179	3.37540575541999	3.45201395059014	3.06323855251482	3.65367931911041	3.38586110229759	3.5448336174069	3.39276850587759	0.267931996310374	0.627376329912444	0.841151302397407
Merged-chr5-3928339-5	chr5	3928308	3928508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_194462, exon 1 of 48)	5' UTR (NM_194462, exon 1 of 48)	222.0	NM_194462	100986.0	Mm.46044	NM_194462	ENSMUSG00000040407	Akap9	5730481H23Rik|AKAP-9|AKAP450|AW545847|C79026|G1-448-15|PRKA9|mKIAA0803|mei2-5|repro12	A kinase (PRKA) anchor protein (yotiao) 9	protein-coding	4.9180541985873	4.66684675806175	5.25361597471363	5.3001727312701	4.78514517285238	4.59685587185433	4.53879972936203	4.9499156374734	-0.682816399241122	0.0615033203482178	0.262433274319149
Merged-chr1-20454862-1	chr1	20454762	20454962	+	812.666687	f0_balb.idr	intron (NM_153179, intron 35 of 66)	intron (NM_153179, intron 35 of 66)	98408.0	NR_045734	75028.0	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA	3.77283320550114	3.70231817126304	3.56657588671573	4.164161855176	3.06828957137692	3.68475634436335	3.55254661703093	3.38514203750678	-1.27728428554683	0.0243800097264088	0.145900850203132
Merged-chr1-64193267-6	chr1	64193130	64193330	+	856.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71841.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	3.38100865099641	3.04094008430827	3.49335295044217	3.27701732090604	3.73187282621617	3.37253346822825	3.58077246100393	3.59412502382502	0.936668551647408	0.075066946059252	0.295661252409888
Merged-chr13-24937538-4	chr13	24937448	24937648	+	908.5750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_102323, exon 1 of 2)	non-coding (NR_102323, exon 1 of 2)	113.0	NM_172532	214579.0	Mm.393311	NM_172532	ENSMUSG00000035936	Aldh5a1	6330403E24Rik|Ahd-1|Ahd1|D630032B01Rik|SSADH|Ssdh1	aldhehyde dehydrogenase family 5, subfamily A1	protein-coding	4.35666577242683	4.17417214817757	4.55239437205114	4.24081115837787	4.14388844932066	4.20104808866677	4.10966919816325	4.58488128965872	-0.145245990789748	0.721508428145734	0.888777813664663
Merged-chr2-24304713-3	chr2	24304613	24304813	+	923.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13517.0	NM_153077	215274.0	Mm.218750	NM_153077	ENSMUSG00000046845	Il1f10	-	interleukin 1 family, member 10	protein-coding	3.58850409998282	3.35989981282601	3.69063650680819	3.83247984842257	3.39379625647779	3.40614127511432	3.5746246445457	3.68844193618512	-0.388005462174924	0.449605496093529	0.734776819728184
Merged-chr6-89294819-4	chr6	89294726	89294926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9101.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	7.63118102926489	7.77724312378236	7.51490291218098	7.72315892863508	7.8960277578032	7.80981132580773	7.77883307343033	7.48097665594528	0.111080245545133	0.537507821400126	0.791118240306023
Merged-chr11-97839618-3	chr11	97839515	97839715	+	865.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010688)	TTS (NM_010688)	-1165.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	3.88011588760202	4.22214797386986	3.56871111563188	3.65379304097671	4.27045181215227	4.21381508943814	4.32495670282548	4.48973924866341	1.23217361073503	0.00608492365713382	0.0548390454534221
Merged-chr1-164071259-2	chr1	164071159	164071359	+	909.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164059, intron 5 of 7)	intron (NM_001164059, intron 5 of 7)	9183.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	3.2547622575402	2.98382004372157	3.25520130262475	3.18469651200074	3.25788933842573	3.30980541817428	3.12812566800313	3.13762707586078	0.148460427206179	0.786862244747172	0.917218685117941
Merged-chr12-86768075-3	chr12	86768003	86768203	+	787.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33734.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	3.2514176198583	3.72412673070021	3.2518171649091	3.28732096498362	3.17261668303654	3.42524342780899	3.17860356162595	3.42137341432768	-0.331905352314738	0.550141441440498	0.798420178617458
Merged-chr1-61141109-4	chr1	61141025	61141225	+	992.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163211.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	5.29606433273147	5.77534238975841	5.36156684821867	4.75056052264664	6.14429770219509	6.08884608552096	5.88468918548245	4.86847742454636	0.822818462671262	0.038936744555606	0.198231781755488
Merged-chr14-50842369-2	chr14	50842264	50842464	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 28 of 54)	B3|SINE|B2	28190.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	3.30417617658268	2.90310595090638	3.18848606739369	2.5761105854333	3.41986509588571	3.17588206044313	3.23463007343466	3.59872151033694	1.3156121244477	0.043356472362434	0.211795370687372
Merged-chr13-83609382-4	chr13	83609283	83609483	+	923.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347569, intron 3 of 10)	intron (NM_001347569, intron 3 of 10)	35776.0	NM_001347569	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	5.21972684510416	5.15078855997071	4.7402072745241	5.4535948100216	4.72972835934793	4.99734358072402	4.44487403004202	5.03298571541751	-0.710151584073829	0.0522674773746798	0.23807172023116
Merged-chr1-130979658-2	chr1	130979558	130979758	+	931.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39543.0	NM_001009940	329244.0	Mm.131480	NM_001009940	ENSMUSG00000016524	Il19	-	interleukin 19	protein-coding	3.42562431015483	3.45210540778142	3.30440819623506	3.27463797831798	3.8766467271315	3.41799243985132	3.67190291207337	3.53539894214609	0.940788192303608	0.0613026548530945	0.261971342268187
Merged-chr1-134081318-4	chr1	134081223	134081423	+	989.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2168.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	4.396980289691	4.6055611316409	5.04870781815741	4.77856619814397	4.91796157979491	4.37007549936407	4.83119568982025	5.10359757529396	0.218757237870252	0.569430991785902	0.809366519988776
Merged-chr9-77912073-4	chr9	77911959	77912159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5306.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	5.99797099977798	6.09986438451197	6.30084499141217	6.04491255037938	6.54690190187971	6.10646254215334	6.03447736884572	6.24152888916542	0.230612008914373	0.350689057295143	0.658186562602986
Merged-chr18-36771436-3	chr18	36771345	36771545	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008214, intron 5 of 12)	intron (NM_008214, intron 5 of 12)	-5231.0	NM_173383	213236.0	Mm.234464	NM_173383	ENSMUSG00000044595	Dnd1	BC034897|RBMS4|Ter	DND microRNA-mediated repression inhibitor 1	protein-coding	4.90563671934971	5.07563961829485	4.96663221433941	5.40522993348161	3.55790423555692	3.88468707626718	3.87331828446336	3.60075700418295	-3.84556038711603	2.0266813714156e-13	2.4829114171427e-11
Merged-chr16-18812306-4	chr16	18812209	18812409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009862)	promoter-TSS (NM_009862)	15.0	NM_011672	22230.0	Mm.237594	NM_011672	ENSMUSG00000005262	Ufd1	Ufd1l	ubiquitin recognition factor in ER-associated degradation 1	protein-coding	5.77327995296727	6.0722762102384	5.45530979695666	5.96881620254252	6.05583455453754	5.66909197464558	6.3112306891099	6.40294732249783	0.457788372181193	0.113117913540731	0.371758574926268
Merged-chr11-120582155-4	chr11	120582050	120582250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133796)	promoter-TSS (NM_133796)	-530.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	6.28514202100867	6.58517325708449	5.90180263861356	6.09078719893212	6.5993434493081	6.17548669904941	6.19782843090829	6.01646630159723	0.0580335679864511	0.830691331990182	0.935017440942484
Merged-chr6-125425953-6	chr6	125425864	125426064	+	882.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-45460.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	3.85563575004649	3.75374246482344	3.9997883921396	3.757723232691	3.92524494748246	3.97693104825507	3.7892437911372	3.95129926725442	0.214828707881491	0.622209805102666	0.838284973451746
Merged-chr1-55525300-4	chr1	55525215	55525415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	Lx9|LINE|L1	119369.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	6.8749237823602	6.87033755080066	6.84894869198324	6.9024374525829	6.9071832439826	6.88049697198642	6.8278430549617	6.9619190962883	0.0269161665891052	0.886248235741375	0.957271285499338
Merged-chr1-106817769-4	chr1	106817640	106817840	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21015.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	5.03737731795299	5.31526241797933	5.17272864868105	5.13376492669269	5.57758099205044	5.14201404171372	5.04868061682875	4.99891933761354	0.115820000610125	0.718833791761445	0.887684154524562
Merged-chr1-74788814-4	chr1	74788696	74788896	+	681.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3223.0	NM_009518	22409.0	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	3.54649178500158	3.75820804545223	3.36862085231309	3.34681007847108	3.80956369351814	3.77201001422646	3.41851027094271	3.6515337617127	0.522485121365475	0.300138527599593	0.612251288689364
Merged-chr19-18687747-3	chr19	18687626	18687826	+	816.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026120, intron 3 of 7)	RSINE1|SINE|B4	16946.0	NM_026120	67383.0	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	3.17672015887568	3.22255181917063	3.2919931214707	3.42396937681818	3.17186087525638	3.15922184109619	3.22392445883778	3.23416595227638	-0.357840347276101	0.509380895484765	0.773990268606403
Merged-chr12-99240262-1	chr12	99240162	99240362	+	588.0	f0_balb.idr	intron (NM_183186, intron 4 of 5)	intron (NM_183186, intron 4 of 5)	-77454.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	3.19578866149092	3.03417583356004	3.25330363619621	3.15260836051583	3.03180500001704	3.11769842524832	3.39578734459556	3.30607717683477	0.220829790556551	0.691267312470265	0.874390745562998
Merged-chr1-105787169-4	chr1	105787064	105787264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	6441.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	7.22011949714739	7.39266507430623	7.45869108401118	7.62324815001376	7.22361485179408	7.44329942553765	7.29362935382431	7.60383264726291	-0.0633402069489584	0.74515582415047	0.899431814827356
Merged-chr8-14988970-4	chr8	14988836	14989036	+	852.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037736, intron 25 of 27)	intron (NM_001037736, intron 25 of 27)	-22089.0	NM_029116	74901.0	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	3.91113604005848	4.05491705620406	4.01245430476583	4.42418833608472	3.80858504188629	4.03323560451128	4.08784163346811	3.96076134265643	-0.437987592365994	0.32757065769487	0.639026279060025
Merged-chr16-91359551-4	chr16	91359460	91359660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13223.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	6.03916126803982	5.85518939537464	5.71961547929541	5.50444510327918	5.5573343232409	5.73991009527979	5.36056111350299	5.3834985538854	-0.440581563807623	0.125245534977076	0.392776663617802
Merged-chr14-27178769-3	chr14	27178690	27178890	+	928.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	MLT1D|LTR|ERVL-MaLR	34797.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	3.88830873372324	4.13996494223141	3.79329269902521	4.28205106871215	3.41121404458982	3.20654712070467	3.50515735489876	3.45367963261219	-2.11504264326253	9.09430420345074e-05	0.00187466979118859
Merged-chr16-30601596-4	chr16	30601488	30601688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177632, exon 1 of 1)	exon (NM_177632, exon 1 of 1)	1865.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	5.92498010252014	6.30288899523864	6.1521954903564	5.85804122458043	5.48778703591356	5.55341341923646	6.10171125514199	5.98756595167964	-0.418139342189951	0.142541419930774	0.420143331819144
Merged-chr10-118766213-4	chr10	118766118	118766318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102685.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	6.45200381070419	6.25603886442731	6.32751284854165	6.26535797182049	6.65662586403412	6.50431491905026	6.87148190695814	6.32298594013951	0.420822228430421	0.06347666175504	0.267428547325362
Merged-chr1-39735900-5	chr1	39735682	39735882	+	861.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14793.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	3.11659247029507	2.90332056809289	3.00064463504987	2.95996106887442	2.94158598567964	3.16968588510359	2.99002330723666	2.99915917024301	0.128658429393939	0.823358966803899	0.932282824802193
Merged-chr7-25688061-6	chr7	25687879	25688079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011577, exon 1 of 7)	exon (NM_011577, exon 1 of 7)	977.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	4.61518544507715	5.10029284798962	4.5293219404265	4.47662195619708	4.82747314522352	5.0842001876002	4.71343844403124	4.57042982661695	0.229325465361586	0.542669063854102	0.793917205662524
Merged-chr6-134614938-4	chr6	134614828	134615028	+	793.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026345, intron 3 of 3)	intron (NM_026345, intron 3 of 3)	17560.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	4.14616735041449	3.93584228716567	3.87780514503349	4.02477087162699	3.84393677442111	3.71609795855597	4.00261104920975	3.71631233204426	-0.494180746879135	0.266243850391495	0.578020222870011
Merged-chr3-146450591-4	chr3	146450492	146450692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001293672, exon 1 of 7)	exon (NM_001293672, exon 1 of 7)	125.0	NM_001293672	74245.0	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	7.8583109340863	7.94265434869903	8.39211662487455	7.98144974166233	7.66099051788591	8.13863673624888	7.90183019471462	7.92757446202433	-0.187559529854095	0.33967519445025	0.648832933028295
Merged-chr15-101319401-2	chr15	101319272	101319472	+	800.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	26160.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	2.72341550175955	2.46021916924061	2.5486231439812	2.28301352619252	2.36736026081321	2.20897744789839	2.40938589179805	2.60827839135468	-0.575578585710121	0.450274330680852	0.735233969144434
Merged-chr14-120477581-4	chr14	120477473	120477673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029519)	promoter-TSS (NM_029519)	-888.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	9.33994547696977	9.4483805926415	9.33560264299619	9.51784703343777	9.35320577731244	9.55606921529679	9.82670760135177	9.327101004857	0.142182219328613	0.388096622897539	0.688846544177653
Merged-chr1-131937866-4	chr1	131937788	131937988	+	964.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25027.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	4.5098558022746	4.63137866131519	4.32573569765833	4.79461936700629	4.83513215315566	4.76646870616645	4.40207969249169	4.74282988840828	0.229638143014483	0.538183523226123	0.791409028532182
Merged-chr7-28383096-4	chr7	28383035	28383235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3907.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	8.87555937122412	8.87616892162162	9.18070085431114	9.02838265373068	8.8042103260876	8.97474373369419	9.09759973937835	8.77512478167615	-0.0980544215472318	0.539761183971829	0.792406302070178
Merged-chr18-65698533-4	chr18	65698431	65698631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177028, intron 1 of 14)	intron (NM_177028, intron 1 of 14)	263.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	6.84919945119951	7.03975414152583	7.06081385098412	6.66208163894615	6.77400703589717	6.77468292267468	6.67361456339454	6.55925028162507	-0.284182870073279	0.181540380826396	0.478232668725227
Merged-chr3-18243193-6	chr3	18243099	18243299	+	853.772217	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007825, exon 1 of 6)	exon (NM_007825, exon 1 of 6)	139.0	NM_007825	13123.0	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding	3.88570980372389	3.35252893752235	3.93007648375088	3.48514528790348	3.36722911018926	3.5864954543504	3.67882985166608	3.8385685052123	-0.164611784528612	0.754829783280418	0.90349862772789
Merged-chr15-27987916-3	chr15	27987826	27988026	+	825.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	37922.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	4.04615523688491	3.75510330531729	4.17546199687924	4.25707343364071	3.81230807596721	3.74081985936246	3.93632179774963	3.84974588005069	-0.679130094521796	0.13354947431887	0.406879169308003
Merged-chr2-170343331-4	chr2	170343243	170343443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13018.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	6.74139269379536	6.42395499449435	6.11599236187529	6.43901137292653	6.47988283518289	6.83274047411661	6.56371800708574	6.41098597760064	0.188234923574599	0.42772876976302	0.71887209364609
Merged-chr15-81813428-2	chr15	81813328	81813528	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_017376, intron 1 of 3)	intron (NM_017376, intron 1 of 3)	2014.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	2.67958144918028	2.284371674849	2.25614474460814	2.34686882265115	2.50781757264364	2.72650792527428	2.66912102612998	2.79392785330598	1.46507482777174	0.0440056774594862	0.21383670916772
Merged-chr1-16618735-4	chr1	16618631	16618831	+	963.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271016, intron 1 of 6)	CpG	607.0	NM_025773	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	4.39366509730182	4.89782498957666	4.80324821375851	4.47822392219926	4.68246857551573	4.97378271446594	4.46702268782721	4.61195113696667	0.0867586175898912	0.816647264669862	0.9294553190268
Merged-chr4-156252805-1	chr4	156252705	156252905	+	567.0	f0_c57.idr	intron (NM_001355709, intron 2 of 10)	intron (NM_001355709, intron 2 of 10)	2537.0	NM_001355709	231004.0	Mm.406833	NM_173736	ENSMUSG00000096351	Samd11	BC026991|mr-s	sterile alpha motif domain containing 11	protein-coding	3.65519615384262	3.51767361523624	3.6005138102241	3.33421776985989	3.57545227601738	4.11178926110286	3.83823143688354	3.65361996200766	0.874925081086407	0.0748651858433221	0.295144229473377
Merged-chr10-62530394-4	chr10	62530311	62530511	+	983.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2966.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	5.9045157384227	5.09762428387297	6.49438675896101	6.58427136679292	5.00839460658318	4.97580538082817	5.41622920195353	5.66568567601981	-1.38812928123437	0.0176063787910903	0.117374209606726
Merged-chr6-3399543-4	chr6	3399428	3399628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010156)	promoter-TSS (NM_010156)	43.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	6.99297144252654	6.82079265291906	6.86150842422046	6.34125963761093	6.69356430961266	6.5833962802046	6.19759697283781	6.16043203848307	-0.473832745736099	0.0688497282413029	0.280410908955871
Merged-chr5-143622463-4	chr5	143622347	143622547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011182)	promoter-TSS (NM_011182)	0.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	6.98803519766426	6.83780492476208	6.80473740376967	6.89657714014199	7.05295507023167	6.89337649374153	6.81193442270065	6.72703137184349	0.00152759870141973	0.993858004903086	0.997702270136287
Merged-chr16-18687102-4	chr16	18687003	18687203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57165.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	6.96118176306197	7.17119873784278	7.35014933850672	7.42771621535923	6.10416479461183	5.76101353667245	6.77065249033763	6.37472431694102	-1.33429543922057	6.76021061141882e-07	2.4450458897875e-05
Merged-chr12-85394217-4	chr12	85394122	85394322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19505.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	6.61412647432757	6.21379390836728	6.45722969164597	6.72046528826965	6.23895537259825	6.26630403816608	6.35527803832634	6.48584177110075	-0.279218586455417	0.231217231014542	0.540724853688999
Merged-chr7-125618190-4	chr7	125618083	125618283	+	939.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021887, intron 1 of 8)	intron (NM_021887, intron 1 of 8)	14754.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	5.03625775077632	4.80968805888046	5.9309119787275	5.97939801566996	4.88838426356454	5.10331206626094	5.39134629316408	4.91783835636045	-0.824090532096146	0.0417627945801144	0.206993521023464
Merged-chr6-124854906-3	chr6	124854816	124855016	+	947.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013534, exon 4 of 15)	exon (NM_013534, exon 4 of 15)	2771.0	NM_013534	14789.0	Mm.35708	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	4.23474909181499	4.06016433901024	4.31986169997178	4.3340537852031	3.85208109064657	4.17207076741912	3.97989740408076	4.39608679778833	-0.348226153620516	0.413424264809384	0.708401031686854
Merged-chr10-13686267-4	chr10	13686185	13686385	+	914.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 4 of 5)	intron (NM_025446, intron 4 of 5)	-133143.0	NM_001347361	56535.0	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	4.8323723163264	4.80114766747638	5.58324045161083	5.41664544649465	4.52832827206698	4.12712370529585	4.28001403220996	4.67454369709481	-1.63289331460254	8.74873824286041e-05	0.0018144709772394
Merged-chr12-111470617-4	chr12	111470512	111470712	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15211.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	5.26680131019799	5.69585364753157	5.38627734796941	5.2163141570759	5.37255623983366	5.0100007697391	5.21050112517714	5.32467555009662	-0.278669442521561	0.365146807100563	0.669848317894152
Merged-chr9-66611831-4	chr9	66611717	66611917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18702.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	5.49458719789674	5.64393616028043	5.3216422183923	4.97811261421417	5.46001121854702	5.58606171126941	5.49445504573127	5.43637138409914	0.224757057751998	0.462561163614334	0.744093316418927
Merged-chr8-70696696-4	chr8	70696605	70696805	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1034.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	5.2185842847952	5.22806860656993	5.46255201187068	4.99288544416177	4.80105754513754	5.13103230841764	4.89454364547481	4.95183823735513	-0.539224720154695	0.0957842081798797	0.338959140600361
Merged-chr6-106794648-4	chr6	106794553	106794753	+	913.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021449, intron 3 of 10)	intron (NM_021449, intron 3 of 10)	5434.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	5.141651251868	4.75798023491272	5.04751576239052	4.9831711909422	5.15035190863599	4.71056096358569	5.28647215592994	4.86815736101559	0.0879452895967384	0.793312184734263	0.919945390221731
Merged-chr9-71160799-4	chr9	71160570	71160770	+	988.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073483, intron 1 of 6)	intron (NR_073483, intron 1 of 6)	1963.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	2.77969824862257	2.68676388693093	2.95407776513278	2.52084963771296	2.69896660397927	2.6846433325501	2.64133914954299	2.89700568194816	-0.0117386472777763	0.985839502020628	0.994788540667462
Merged-chr10-87857382-4	chr10	87857292	87857492	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001314010)	promoter-TSS (NM_001314010)	-873.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	5.29136631305911	4.8322651492308	4.96534727933398	5.09374324485284	5.17658896444086	4.75119877172582	4.30122334618617	4.77999633383189	-0.500491707049002	0.190853285354456	0.490284569083293
Merged-chr15-38300903-4	chr15	38300818	38301018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289471)	promoter-TSS (NM_001289471)	-207.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	9.00191703291256	9.21853737398877	9.15170399981857	8.89566516123915	9.18933543560768	9.28780314409794	9.22955539250944	8.97968345293801	0.131730531104137	0.397438604490642	0.695843269866741
Merged-chr18-67486694-1	chr18	67486594	67486794	+	818.333313	f0_balb.idr	Intergenic	L1_Mur3|LINE|L1	21845.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	3.9948702217267	3.9419013849589	3.75645680833995	4.12865113186031	3.88087102497041	3.64315024239856	3.45209770757724	3.6448926635451	-0.871353733306186	0.0727478250365709	0.290150511327058
Merged-chr2-156857506-4	chr2	156857423	156857623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015591, intron 1 of 2)	intron (NR_015591, intron 1 of 2)	5422.0	NR_015591	74487.0	Mm.490465	NR_015591	ENSMUSG00000085741	5430405H02Rik	2610307N17Rik	RIKEN cDNA 5430405H02 gene	ncRNA	5.8881671083711	5.69185457250082	5.56305005784117	5.91778917851869	5.55207178065141	5.79521675178397	5.94409617495626	5.84002670624574	-0.00291398350479746	0.991268579358256	0.996729805621513
Merged-chr11-106751202-4	chr11	106751098	106751298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271372)	promoter-TSS (NM_001271372)	-28.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	5.60366667640121	5.46064012472154	5.63074470139142	5.38279700806469	5.77899721124048	5.75275092160957	5.83564350023127	5.46160930270065	0.351650513994541	0.190101421059145	0.489188726563073
Merged-chr13-42282748-3	chr13	42282648	42282848	+	933.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18728.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	3.58341630032724	3.6044490027219	3.31160743627323	3.59174006720599	3.11878562876865	3.3618098614203	3.2999065273944	3.47988548008348	-0.76703253579205	0.150501979564958	0.433182968396867
Merged-chr15-101144921-4	chr15	101144825	101145025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001277259, exon 12 of 12)	3' UTR (NM_001277259, exon 12 of 12)	16403.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	5.71190673932455	5.75308185501477	5.50945231819045	5.48965584566128	5.18344453824499	5.56989581766145	5.2738747457643	5.66103149054348	-0.326620517153252	0.259002153716089	0.57079429993676
Merged-chr12-79298061-4	chr12	79297950	79298150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252562, intron 1 of 7)	intron (NM_001252562, intron 1 of 7)	699.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	5.4142075135811	5.40280388761341	5.5742860829651	5.72835845795166	5.01907920649105	5.30873560899414	5.20736990835412	5.32364425311703	-0.608837737833646	0.0377599544621441	0.194283345284152
Merged-chr5-31202360-4	chr5	31202228	31202428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175311)	promoter-TSS (NM_175311)	-25.0	NM_175311	101023.0	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	8.17614687262492	8.35864264221573	8.22601299760577	8.04486721273953	8.36506796328858	8.61171011386965	8.51888832614116	8.28437333852491	0.313712376115688	0.0587641618190461	0.25518725362198
Merged-chr6-120467190-4	chr6	120467101	120467301	+	930.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	4004.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	4.44040623235581	4.47120434011197	4.5642809983493	4.71271114910465	4.35393576500553	4.48048192041187	4.54311145555419	4.48064963388738	-0.234317482289164	0.520600631701403	0.780840127415911
Merged-chr9-75434284-4	chr9	75434203	75434403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7221.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	7.04512202893136	7.32156720079494	6.84404427420642	6.92038025231829	7.24535552499456	7.62423353891384	7.04749661269822	7.22629041572755	0.34880597531985	0.108465109943876	0.363483160530424
Merged-chr11-97546089-4	chr11	97546004	97546204	+	967.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 3 of 19)	(CA)n|Simple_repeat|Simple_repeat	29022.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	4.86588957302983	4.61817943679558	4.75448777813031	4.75040716107681	5.00682055591848	4.72172477968858	4.80739070586943	5.23243240475982	0.43120228390156	0.199598562547263	0.501474545095065
Merged-chr5-64488176-4	chr5	64488079	64488279	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11171.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	5.17676521572609	5.75054935312832	5.53468384560462	5.38772490939539	5.616797647301	5.24930278487357	5.21882614972918	5.24093168329233	-0.21614108552974	0.482839166388319	0.757421686487144
Merged-chr14-59297583-4	chr14	59297470	59297670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172603)	promoter-TSS (NM_172603)	-48.0	NM_172603	219131.0	Mm.254918	NM_172603	ENSMUSG00000044703	Phf11a	4933417L10Rik|Phf11|Phf11l	PHD finger protein 11A	protein-coding	5.86642310862233	5.92725982260482	6.31157528144244	5.68429681750892	5.91080973297111	5.74989690937312	6.3449559502798	6.28993942839379	0.220786978270563	0.434117464256786	0.723502001646815
Merged-chr2-103606357-4	chr2	103606240	103606440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	40030.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	6.51342826986966	6.47223190808702	6.15704104486555	6.51873253161427	6.41431368621651	6.70646494232375	6.4648639385901	6.67820364145423	0.195012991600005	0.382304667739369	0.684373621674477
Merged-chr1-84363045-4	chr1	84362948	84363148	+	992.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78403.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	5.10453968148264	5.1924029071433	5.28753002054769	5.00548466464267	5.08093319770435	5.24549086680216	4.94398943074399	4.99995393879086	-0.133232908781423	0.66479277125324	0.861073297406066
Merged-chr19-5712135-4	chr19	5712027	5712227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114595, intron 11 of 17)	intron (NM_001114595, intron 11 of 17)	7656.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	6.40493926223288	6.21328108169638	6.0869189835306	5.82722030357149	6.63986020223076	6.68365303492342	6.89601909147605	6.61192394745472	0.858918353014722	0.000284497038276803	0.00485849680602318
Merged-chr13-19416249-6	chr13	19416126	19416326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-20413.0	NM_001347485	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	4.67096992178923	4.23268509605766	4.63167899975244	4.60709332346929	5.28441683887511	4.80636611237498	4.68824530810231	4.6286676526415	0.723232126856404	0.0575732374322715	0.251828517617627
Merged-chr3-38421960-3	chr3	38421855	38422055	+	936.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62861.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	3.78230729930983	4.08562847773393	4.15624229685357	4.13171678480108	3.68347763222878	3.78667496969487	3.96671756823307	3.78078072328062	-0.71334530372202	0.11289008234579	0.371420623567672
Merged-chr16-21702853-4	chr16	21702765	21702965	+	906.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8200.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	5.07976917271565	4.79029395924812	5.022027936903	5.07340970959488	4.52021085025766	4.5001218033958	4.34986362376833	4.31520494172925	-1.22990128763557	0.000562315652439523	0.00848343828563334
Merged-chr9-65562323-4	chr9	65562212	65562412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 3 of 5)	intron (NM_153119, intron 3 of 5)	17775.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	7.22407014810099	7.22660867809137	7.90374013803643	7.22935908922018	7.172001135025	7.32428173333823	6.6583131744216	6.67100582537971	-0.590980545351155	0.0226571963055552	0.139047441707985
Merged-chr13-8643529-3	chr13	8643403	8643603	+	988.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 3 of 10)	intron (NR_110345, intron 3 of 10)	227541.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	4.68899982840044	4.41318737987042	4.8201762421167	4.91356227966642	4.24986343887064	4.15658586618492	4.01386395261884	3.96933763511198	-1.47879515298866	0.000328706119376814	0.00546785998390331
Merged-chr6-147799201-3	chr6	147799101	147799301	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108960.0	NR_033636	100039727.0	Mm.396220	NR_033636	ENSMUSG00000085077	1700049E15Rik	Gm15761	RIKEN cDNA 1700049E15 gene	ncRNA	5.69192565002533	5.64414037394662	5.46460539279821	5.98023772872996	3.96359564735807	4.79862636566668	4.38305878993915	4.09406649321035	-2.89335178166224	7.02190231381562e-13	7.67760345307346e-11
Merged-chr7-100780456-3	chr7	100780371	100780571	+	802.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178764, intron 2 of 8)	intron (NM_178764, intron 2 of 8)	73836.0	NM_001362170	319604.0	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	3.45344135782782	3.43333839538068	3.50983710425127	3.77989779933175	3.52221856181249	3.44636074655696	3.60005383101513	3.5079559612912	-0.15192976145367	0.763232597177937	0.907128857776656
Merged-chr6-57692056-4	chr6	57691952	57692152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025574)	promoter-TSS (NM_025574)	26.0	NM_025574	66459.0	Mm.44201	NM_025574	ENSMUSG00000043162	Pyurf	2610022G08Rik|AI847956|Prey	Pigy upstream reading frame	protein-coding	6.83461400113838	7.08877849815641	7.60160862391325	7.53420566296844	6.88627021800036	6.75638050065386	7.39459693983042	6.9563445967399	-0.391761247447	0.119426192756644	0.382419223727845
Merged-chr13-100002057-3	chr13	100001980	100002180	+	926.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030026, intron 1 of 16)	intron (NM_030026, intron 1 of 16)	13559.0	NM_030026	78038.0	Mm.137327	NM_030026	ENSMUSG00000021646	Mccc2	4930552N12Rik|MCCB	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	protein-coding	3.72533971630312	3.71206232609535	3.56438829335654	3.9785368503945	3.59488482718683	3.62107381061081	3.43290983172213	3.86677778066215	-0.397401564307523	0.422430704163939	0.714718209928333
Merged-chr11-116027984-4	chr11	116027873	116028073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-2343.0	NM_001286006	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	6.80139334970325	7.56804887754414	6.58262627285605	6.38614696626	7.18371955459807	7.07680925708553	6.75347131521463	6.99724666261808	0.132091774621681	0.648911039120812	0.852475708788533
Merged-chr1-172451307-4	chr1	172451176	172451376	+	756.645874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24084.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	4.48823438824677	4.10384756299516	4.6649338037268	3.83144924034544	3.91822018212317	4.45822072835386	4.22022950708365	4.28170630494073	-0.178719417398848	0.700238567752007	0.879054781621322
Merged-chr1-164336074-4	chr1	164335969	164336169	+	851.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178071, intron 5 of 9)	RLTR12B|LTR|ERVK	28397.0	NM_138314	171567.0	Mm.219428	NM_138314	ENSMUSG00000026575	Nme7	D530024H21Rik|Nm23-M7|Nm23-r7	NME/NM23 family member 7	protein-coding	4.45129208626774	4.29686193598769	4.32846626873828	4.29789651253215	4.40333551486976	4.26790189332078	4.26563585607796	4.2363367154938	-0.0949056211861908	0.802360322453488	0.923837898429573
Merged-chr19-46523793-5	chr19	46523729	46523929	+	965.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22181.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	4.00560872529774	4.19046921002174	4.14656785736097	3.47642641715366	3.96582166768519	4.18031881684256	4.25275470408553	4.00379250783711	0.343337854564689	0.46895102618138	0.748028481194465
Merged-chr9-61310233-4	chr9	61310202	61310402	+	974.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16493.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	3.57863702603112	3.62057286787945	3.46836703901416	3.38870537191374	3.53616720523954	3.64095429985132	3.51126517177303	3.67892854849384	0.267150299617995	0.580391140323567	0.815718435955212
Merged-chr8-94179068-4	chr8	94178955	94179155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013602)	promoter-TSS (NM_013602)	-34.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	9.12618551989315	9.28730013002007	9.31316456129421	9.23094409332837	9.13386198865017	9.24832635453425	9.27282376695474	9.07526175547172	-0.0709604107472969	0.612824439579496	0.832860403727593
Merged-chr15-100664106-4	chr15	100664016	100664216	+	902.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270537, intron 1 of 10)	intron (NM_001270537, intron 1 of 10)	5384.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	4.12148091050096	4.57715319435976	4.50682857821835	4.30462713290597	4.11475110978218	4.39036710201872	4.24490465943152	4.0173327802498	-0.477822561132247	0.241775548339493	0.552289530014659
Merged-chr12-80054499-4	chr12	80054379	80054579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58534.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	6.83455824012725	7.17632366841946	7.10481572917046	6.80292484888853	6.71377346987691	6.85299472983163	6.56222961582072	6.31595500306128	-0.504533077459395	0.0251441971349149	0.149008309704946
Merged-chr10-117845311-4	chr10	117845223	117845423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	651.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	7.5943299403803	8.0420050596624	8.11293615104231	7.77576725009184	8.1222267581715	8.09840946900807	8.01796637789231	7.87185034285482	0.177996909160071	0.335689112588189	0.645927430703489
Merged-chr11-115279929-3	chr11	115279813	115280013	+	970.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-2944.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	3.21392344233357	3.25886150599467	3.29819287784752	2.46872674916285	4.7910585248142	4.38203516625895	4.7967369044714	4.70535898580242	6.91655115398483	8.75754729129481e-18	2.18316905368425e-15
Merged-chr1-43843658-4	chr1	43843517	43843717	+	923.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15909.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	3.81252040864962	3.99853432932764	3.81305441301597	3.87027120557404	3.65767111327348	4.30615486048002	3.84904242517407	3.81089465028237	0.123101045096374	0.791059740837425	0.918932146915872
Merged-chr4-145218044-4	chr4	145217967	145218167	+	972.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 9 of 9)	intron (NM_011610, intron 9 of 9)	-23062.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	5.62865742508061	4.84871331597659	6.44002663466454	6.41848117593411	5.71395283953403	5.4599831887156	6.33004098596414	6.17047401614216	-0.0257057466826481	0.969046794904865	0.988869722693227
Merged-chr7-19823632-4	chr7	19823536	19823736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033601)	promoter-TSS (NM_033601)	-881.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	6.55922532485832	6.44890485014489	6.71220002617737	6.87038945199923	6.45650853501371	6.50839568464034	6.64921009279417	6.43741555182463	-0.227151387957608	0.302030801420065	0.614341041729404
Merged-chr2-33918971-4	chr2	33918872	33919072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31026.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	7.53152740816398	7.05408542554069	7.2510828044354	7.10692399992543	7.35123074380527	7.43900830407884	7.56313795509248	7.19034234177473	0.204064707650211	0.310072774419475	0.622199763486801
Merged-chr3-21938238-4	chr3	21938131	21938331	+	960.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138421.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.45128185354003	5.42303354944716	5.34031829184816	6.03121717741512	4.67499626834959	4.85243773028157	5.22321368885041	5.18136579252541	-1.1250692058674	0.0012275165316562	0.015848612226874
Merged-chr2-166826976-4	chr2	166826889	166827089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085495, intron 2 of 38)	intron (NM_001085495, intron 2 of 38)	21408.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	5.62665602191286	5.6194099732436	5.73258344504106	5.99996674601584	5.9765795821092	5.59950136773145	5.93168768180232	5.87111225722839	0.141073296592024	0.599525314766695	0.826447417057782
Merged-chr15-96621894-4	chr15	96621803	96622003	+	814.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166456, intron 2 of 15)	intron (NM_001166456, intron 2 of 15)	20059.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	4.41367534512877	4.25642186471933	4.2936116366042	4.57854969183554	4.13608084906257	4.18758878829102	4.09477291500926	3.58066793827634	-0.948447620574523	0.034565125758171	0.183976950649206
Merged-chr4-129928656-3	chr4	129928565	129928765	+	955.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22439.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	3.78295206097753	3.81749643312337	3.72907623931245	3.56314642773382	4.32745443831576	4.05713575216266	3.65840670913928	3.83348063854854	0.806812103634178	0.0871385620819379	0.3219368685991
Merged-chr14-34768579-4	chr14	34768469	34768669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-51567.0	NM_008166	14803.0	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	6.57934606111366	6.81660504353137	6.45373319233325	6.38681987245019	6.01096831569368	6.2887863212816	6.36983399059539	5.96810807873575	-0.598471981803408	0.0133298209271267	0.0967081157651567
Merged-chr11-95834527-4	chr11	95834422	95834622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025659, intron 3 of 7)	intron (NM_025659, intron 3 of 7)	-7773.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	7.39676834187671	7.07528915445259	7.30944206367982	7.43057465946471	7.20159252727209	6.83415486728159	7.22108923256181	7.25229311859183	-0.233011054188635	0.243916922359778	0.554954854295882
Merged-chr2-155135301-4	chr2	155135226	155135426	+	891.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243712, intron 1 of 25)	RSINE1|SINE|B4	1845.0	NM_008395	16396.0	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	4.5927803638506	4.56230230429328	4.81054699165389	4.73888922178377	4.25427835496155	4.13275438910943	4.44908804116574	4.90294579249729	-0.476741827477475	0.232928311241596	0.542529132777439
Merged-chr19-46962390-4	chr19	46962284	46962484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028353)	promoter-TSS (NR_028353)	-33.0	NR_028353	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	6.26424942762746	6.46489433583425	5.84237857367799	5.73158002124145	6.12995271939696	6.38489724354842	5.86159581604977	5.91132868402706	-0.0230534387898854	0.936417954500951	0.976976301044587
Merged-chr4-135307093-4	chr4	135306998	135307198	+	974.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34338.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	5.45899555807279	5.63840711302706	4.89947620018572	4.82134586024287	5.55131182746582	5.49333547591523	5.40550140744363	5.05141112224883	0.265551223809308	0.452828863424493	0.73705030775748
Merged-chr16-57634367-2	chr16	57634280	57634480	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007739, intron 2 of 3)	intron (NM_007739, intron 2 of 3)	-27513.0	NM_025599	66497.0	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	3.2050400427634	2.98672274414929	3.09362310672927	3.02047810096916	2.86340029308001	3.08010430628691	3.0230240411142	3.14904544463107	-0.193768277766951	0.737745624401539	0.896476300861738
Merged-chr16-91729901-3	chr16	91729803	91730003	+	931.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	CpG	532.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	3.46716673330797	3.73318901679793	3.58694138033212	4.0324165701868	3.80101568571234	3.70289345559233	3.62880273252625	3.79490527672077	-0.020249843634025	0.967640392590836	0.988556045979739
Merged-chr2-72376230-4	chr2	72376134	72376334	+	875.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 7 of 19)	(TG)n|Simple_repeat|Simple_repeat	90533.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	4.22053073244423	4.35890281399799	4.26823633107258	4.24652848347216	4.25662204829644	4.5292210855855	4.53600579213604	4.51722864802752	0.435274113643746	0.246544556686923	0.557792075571706
Merged-chr2-163100689-4	chr2	163100583	163100783	+	931.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11082.0	NM_026630	68236.0	Mm.33648	NM_026630	ENSMUSG00000070708	Gtsf1l	2410116G06Rik	gametocyte specific factor 1-like	protein-coding	4.11709197470062	4.15581829834233	4.29937418550899	4.13279613999859	3.89933407264444	4.38384524008538	4.50865952207791	4.11523866961046	0.161380859060872	0.701613005589126	0.879767652498371
Merged-chr4-150132851-3	chr4	150132750	150132950	+	908.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019741, intron 6 of 13)	intron (NM_019741, intron 6 of 13)	13506.0	NM_019741	56485.0	Mm.260220	NM_019741	ENSMUSG00000028976	Slc2a5	AI526984|Glut5|Slc5a	solute carrier family 2 (facilitated glucose transporter), member 5	protein-coding	3.71035927486433	3.70631074536209	3.71087957622999	3.32958819011338	4.04072586972077	3.7754779893623	3.69582860664011	3.95114100131217	0.807567311093842	0.091757100972072	0.331178879878866
Merged-chr18-34504071-1	chr18	34503971	34504171	+	747.0	f1_c57bl6.idr	intron (NM_146084, intron 1 of 20)	MTD|LTR|ERVL-MaLR	2752.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	2.62197833227602	2.97239189081382	2.96780604952117	2.92496478123331	3.20519135734469	3.01294988026891	3.01590086277833	3.02568378984872	0.787373366808918	0.199883177606395	0.50185984431534
Merged-chr8-68195603-4	chr8	68195441	68195641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80987.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	4.80970123202269	4.71246014785041	5.28803288025677	5.30122321429401	5.08023677145303	5.02913946366228	5.31671198374993	5.31240647887634	0.225012371360294	0.508214243811752	0.773396125844835
Merged-chr5-130845776-3	chr5	130845632	130845832	+	730.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	396940.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	3.10969786846616	3.10047483433098	3.11009466275063	3.2573454106785	3.02301173336003	3.15940932462009	2.9803499894837	2.85764349387153	-0.596378851680092	0.306175741941605	0.618638025596462
Merged-chr2-89117473-4	chr2	89117373	89117573	+	991.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4963.0	NM_146902	258904.0	Mm.330377	NM_146902	ENSMUSG00000075102	Olfr1221	MOR233-3	olfactory receptor 1221	protein-coding	5.17118321085745	5.32758530876333	5.5372115153239	5.86461488315006	5.41995078331632	5.57236824185096	5.58568893936731	5.2032334631479	-0.124323504124136	0.693105412938497	0.875216252807466
Merged-chr4-130821130-3	chr4	130821037	130821237	+	730.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 3 of 4)	intron (NM_011520, intron 3 of 4)	28600.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	3.63273341538215	3.89382120227782	3.79500060715663	4.16542041684975	3.59687494643966	3.564283436925	3.6196352726248	4.02350984628772	-0.547965278808746	0.271496827210852	0.583222139604812
Merged-chr2-122572033-4	chr2	122571934	122572134	+	888.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39243.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	4.85131673251859	5.53962524471329	4.59062542089946	4.43447153339507	4.38190011714175	4.34136754113571	4.2451715026234	4.58759358485961	-1.14662847675719	0.00939803501922729	0.0755277469794267
Merged-chr12-44933176-4	chr12	44933050	44933250	+	992.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144552, intron 2 of 5)	intron (NM_144552, intron 2 of 5)	141333.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	4.77792038824934	4.97383145214596	4.96365976304557	5.05384525456474	5.12001600734101	4.87284387142296	5.00646863734094	4.92536874529209	0.0706907717311601	0.823864563170747	0.932436369940542
Merged-chr7-75638942-4	chr7	75638843	75639043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	183409.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	6.59136072832939	6.72737888823708	6.47327922894464	6.84260538662955	5.53460819798389	5.63420583004532	5.64182230787234	5.60677225959026	-1.67768309633511	3.75244923419128e-12	3.63395352436056e-10
Merged-chr1-138964143-3	chr1	138964043	138964243	+	984.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166501, intron 1 of 21)	intron (NM_001166501, intron 1 of 21)	434.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	4.40645229476343	4.14373098283925	4.49106006196169	4.43937756634553	4.71010187751381	4.66216501426844	4.47036721159792	4.26746284058131	0.378836807456735	0.320994491561942	0.632737838956237
Merged-chr1-71103692-3	chr1	71103605	71103805	+	947.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007525)	promoter-TSS (NM_007525)	-733.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	4.05705040381423	4.14633508339529	4.01177845366594	3.9113642049981	4.02553500193161	3.75275472222997	3.99447566020957	3.80769500930219	-0.331846391551723	0.447176125985171	0.732791911582523
Merged-chr4-53116055-4	chr4	53115948	53116148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	43847.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	7.65695897291393	7.54227017167803	7.52866969100905	7.65048572511237	7.43093195358181	7.36314175869521	7.78173526602785	7.32684393452443	-0.144684333034985	0.436766655109281	0.725278104435332
Merged-chr4-3778583-2	chr4	3778483	3778683	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	57072.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	2.70123935107192	2.84190230802508	2.83343567884312	2.44865512937319	2.78361134306392	3.06491065827581	2.88345945762484	2.83197934404584	0.864720932910089	0.184440042183735	0.481859341625841
Merged-chr19-55660341-4	chr19	55660235	55660435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	41869.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	8.41652628385557	8.40156780368134	8.33414969816326	8.17827678571348	8.25616191655234	8.33162117006503	8.34282831480549	7.92315730889776	-0.135824870266955	0.427232852865768	0.718420166650109
Merged-chr11-69428959-4	chr11	69428846	69429046	+	869.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 77 of 85)	intron (NM_001081330, intron 77 of 85)	-15271.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	4.19811884956286	4.18750649756189	4.24472932054502	3.92859861596018	4.51852804422695	4.27714783831273	4.2698376896626	4.41080413208652	0.617441764705899	0.117308821923401	0.378801643863619
Merged-chr10-34176258-3	chr10	34176185	34176385	+	693.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 2 of 5)	intron (NM_172508, intron 2 of 5)	31266.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	3.77544968972613	3.0619826662558	3.34545122722047	3.77760911860001	3.59105985796984	3.58308744626466	3.7590751352345	3.52215254665944	0.265799583623021	0.641251915831505	0.84863530101299
Merged-chr3-158061715-4	chr3	158061645	158061845	+	985.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359763, intron 11 of 13)	intron (NM_001359763, intron 11 of 13)	25063.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	5.00875243498389	4.93594511806444	4.8633248499979	5.08591058632687	5.24571458772428	5.00070138565426	5.2612016245128	5.00621332791917	0.296502380068259	0.339057061889152	0.648338238991188
Merged-chr4-122924024-4	chr4	122923911	122924111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37177.0	NM_029662	76574.0	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	6.14018953328721	5.91894815334449	5.82253310359923	5.83502590507839	5.99356525241156	5.64180531757191	6.09099356496921	5.71787335162369	-0.073441967659319	0.777804129706448	0.913396205812139
Merged-chr6-129548244-4	chr6	129548187	129548387	+	915.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-15003.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	4.22360895323788	4.33859974734466	4.22425153878146	4.59129993586504	4.07874771931654	4.10058188570074	3.90699094124424	4.30837047774659	-0.66078052246979	0.113254342752851	0.372055700503307
Merged-chr2-104690916-4	chr2	104690818	104691018	+	930.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177190, intron 5 of 9)	MTC|LTR|ERVL-MaLR	21244.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	4.50979127463746	4.72076127421779	4.46929426769714	4.40880614008709	4.60699428045609	4.02665018046782	4.60472648099245	4.50760529603407	-0.141659638904897	0.718620103233998	0.887629976798039
Merged-chr1-39847256-4	chr1	39847160	39847360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040465)	promoter-TSS (NR_040465)	70.0	NR_040465	73426.0	Mm.396239	NR_040465	ENSMUSG00000101634	1700066B17Rik	-	RIKEN cDNA 1700066B17 gene	ncRNA	6.93663550968267	7.26972263648285	6.98986524098647	6.78921910987387	7.051485062708	7.40853978621188	7.15352835812705	6.79271518329628	0.157607602266744	0.476395849266618	0.75294719537583
Merged-chr2-148522251-4	chr2	148522139	148522339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78704.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	7.96669633764417	7.67248369853289	8.36392828326574	8.22601014719357	7.92556637114486	8.02147626311683	8.09215121851842	7.77552483536454	-0.164300327305079	0.412568597175921	0.707653867135401
Merged-chr17-24351969-4	chr17	24351874	24352074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013855)	promoter-TSS (NM_013855)	-49.0	NM_013855	27410.0	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	7.76174528794407	8.02234933887224	7.1544743307486	7.74672119978295	7.53896103969816	7.7055300923601	7.3446893927666	7.56820909968102	-0.22122412191728	0.314705204561571	0.626707376423022
Merged-chr13-63112216-1	chr13	63112116	63112316	+	863.0	f0_balb.idr	intron (NM_001289926, intron 5 of 15)	intron (NM_001289926, intron 5 of 15)	-127813.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	3.89453943035324	3.20640328633939	3.54427743787672	3.93571888357542	2.93829309047062	3.0997477140166	2.97839130726775	3.26135622757137	-2.36704084393066	0.000247584868084194	0.00432462412892388
Merged-chr19-38011562-4	chr19	38011457	38011657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 3 of 53)	intron (NM_001302140, intron 3 of 53)	32020.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	7.02890262459196	7.14369778702738	7.3085127013558	6.79427431984274	6.16989603165465	6.61405685794026	6.5417423686391	6.25204945926952	-0.963889207804206	3.63657495640868e-05	0.000856828099378396
Merged-chr13-37797775-2	chr13	37797673	37797873	+	644.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28265.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	2.74842413912649	2.73763236817238	2.69107844778976	3.06087694839407	2.32177297862245	2.29568832163863	2.27356244813449	2.27717521603098	-3.90217212746026	0.000218274292670492	0.00390758196126583
Merged-chr18-10533772-4	chr18	10533680	10533880	+	800.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083628, intron 19 of 32)	intron (NM_001083628, intron 19 of 32)	76572.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	4.1083099086532	3.693495946706	3.84425290003967	3.55085863463894	3.86911480166401	3.74967120629849	3.67343872856896	3.79198601034686	-0.0760381144152945	0.873618594727297	0.952644984851839
Merged-chr10-53379877-4	chr10	53379776	53379976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204983)	promoter-TSS (NM_001204983)	-25.0	NM_001204983	100038725.0	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	Gm9766	centrosomal protein 85-like	protein-coding	7.46983876271273	7.3860905341189	7.60623712003661	7.72087859932668	7.56461080567771	7.34982327847967	7.8348980598642	7.29372761657045	-0.0351577954346416	0.861091914944481	0.947525916177121
Merged-chr3-88623548-4	chr3	88623439	88623639	+	859.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	2145.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	4.6262080150966	4.28787726240069	4.2290783089109	4.69823635682835	4.04289202301782	4.20619715087535	4.06413693329786	4.27232972869705	-0.839464109628635	0.0406634537902808	0.203829857559042
Merged-chr19-32389675-4	chr19	32389568	32389768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033198, intron 1 of 1)	CpG-7452	452.0	NR_033198	67188.0	Mm.391160	NR_033198	ENSMUSG00000097787	2700046G09Rik	-	RIKEN cDNA 2700046G09 gene	ncRNA	5.15144763139533	4.94520915845507	5.26859479352165	5.03714643474301	4.98976374394182	4.89980008265445	4.89553151877793	4.91565161083067	-0.329503413938641	0.293121027500512	0.605634790273762
Merged-chr9-70257670-4	chr9	70257565	70257765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	50315.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	5.84866507300857	5.65624609451891	5.80396714580821	5.68597093875087	5.70120951189065	5.6647158165981	5.70298037707873	5.79985053599728	-0.0422574260998107	0.866724505736428	0.950037476227932
Merged-chr10-86947731-3	chr10	86947632	86947832	+	980.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 17 of 68)	L2a|LINE|L2	60210.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	4.21316315760773	4.70610029042086	4.38898145358618	4.59681576407321	3.84797269563725	4.07985946345076	4.28497582849528	4.11400781316771	-1.03156912330842	0.0140170835397749	0.10009249491148
Merged-chr6-34966346-4	chr6	34966247	34966447	+	918.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025573, intron 2 of 7)	intron (NM_001025573, intron 2 of 7)	11652.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	4.5888483250693	4.73137117416722	4.46628756193725	4.59791065382042	4.76279957337869	4.19205073933162	4.67950474014042	4.37432422399913	-0.14454380387786	0.704983199951231	0.881563627356675
Merged-chr13-42049238-1	chr13	42049138	42049338	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-2783.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	4.70683810587553	4.68307102576918	4.93581971820253	4.62840752461674	5.09688414856968	5.10872228992125	5.01150360460593	5.09549608008982	0.69555724819967	0.0278592276369442	0.159558413579824
Merged-chr4-112256202-3	chr4	112256105	112256305	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177578, intron 4 of 7)	MTD|LTR|ERVL-MaLR	23960.0	NM_001102474	195564.0	Mm.259652	NM_177578	ENSMUSG00000070868	Skint3	A430090E18Rik|Skint-3	selection and upkeep of intraepithelial T cells 3	protein-coding	3.20886519267214	3.10410442965827	3.20924648519272	2.41724398494226	4.60672926816185	4.52130824748477	5.04296832371265	4.8672961598397	8.5938348819472	1.78052542175515e-19	5.58308453722951e-17
Merged-chr15-55550964-4	chr15	55550897	55551097	+	652.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026759, intron 2 of 6)	intron (NM_026759, intron 2 of 6)	6315.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	3.23200749083165	3.33625595020009	3.51645303377194	3.27462071175719	3.48525804402881	3.40698241049944	3.3969413212555	3.51440354490574	0.398734982264735	0.431510396568431	0.721710551668303
Merged-chr8-90857092-4	chr8	90857006	90857206	+	866.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	28271.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	5.06051247061606	4.77070699426198	5.20638258583073	5.33979289828979	4.53601744068729	4.46902945801172	4.51559547974633	4.78451481045854	-1.1159175943286	0.00175997053160203	0.0211824386995098
Merged-chr8-83106192-2	chr8	83106098	83106298	+	792.333374	f0_balb.idr|f1_balb.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-59154.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	3.62114058217495	3.56240787822183	3.9283627111395	3.39594416719934	3.71142582080072	3.18702727054983	2.99109246609704	3.34393422959152	-0.981837360830539	0.114936506738936	0.375165929593897
Merged-chr3-37332356-4	chr3	37332268	37332468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16285.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	6.71769165291468	6.37220348038681	6.96491855258034	7.22028819260139	6.88823182063737	6.68379000113938	6.95414169848828	6.88326520112345	-0.0176914544011748	0.942596960064688	0.979213304897811
Merged-chr15-62037936-4	chr15	62037824	62038024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003368)	promoter-TSS (NR_003368)	-62.0	NR_132747	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	6.17572951545115	6.0819223421734	6.25582442755176	6.27024233038246	6.54173675643882	6.45028578925549	6.10447966132265	6.55533962160108	0.342086682248386	0.138834773561081	0.414381792154761
Merged-chr8-57512461-3	chr8	57512366	57512566	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008252, intron 1 of 4)	CpG	623.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	4.71024959190236	4.31280474719347	4.58712669905351	4.74309543068819	5.17779457280222	5.19335246975376	4.68885966567202	4.70791813967005	0.743400987819068	0.0433027991510882	0.21166741938762
Merged-chr14-47374550-4	chr14	47374430	47374630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145953, intron 1 of 5)	intron (NM_001145953, intron 1 of 5)	670.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	8.16921500451017	8.21808766109405	8.46213809724627	8.37448135183404	8.05655538838455	7.99975953836136	8.05039790481676	8.12184104906171	-0.326002326956103	0.0404769447931735	0.203281482638347
Merged-chr18-61211667-4	chr18	61211600	61211800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007885)	promoter-TSS (NM_007885)	-104.0	NM_007885	13521.0	Mm.24803	NM_007885	ENSMUSG00000034320	Slc26a2	Dtd|ST-OB	solute carrier family 26 (sulfate transporter), member 2	protein-coding	7.86739045743493	8.04077876367964	7.90505095508364	7.86551972198273	7.91558566899208	7.79379866951674	7.81594159462816	7.89254752321083	-0.0808823985019498	0.613561960828519	0.833337661186734
Merged-chr16-35770343-4	chr16	35770229	35770429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175111)	promoter-TSS (NM_175111)	-57.0	NR_152314	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	6.49119862425793	6.29296275121701	5.97259562010691	6.50332778693764	7.00040394866517	6.79819196164256	6.70509288191421	6.84203864945388	0.721210712868865	0.0016108901702177	0.0197658251035901
Merged-chr2-35201114-4	chr2	35201011	35201211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026697)	promoter-TSS (NM_026697)	9.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	8.02289720526625	8.20697843830468	7.68684239402355	8.10281308101573	8.29902298234729	8.16086176351544	8.22318354047688	7.86917090112046	0.1629739600225	0.387269045699628	0.688139428549813
Merged-chr17-8468973-1	chr17	8468873	8469073	+	704.333313	f0_balb.idr	Intergenic	Intergenic	34550.0	NM_009309	20997.0	Mm.913	NM_009309	ENSMUSG00000062327	T	Bra|D17Mit170|Low|Lr|T1|Tbxt|Tl2|Tl3|cou|me75	brachyury, T-box transcription factor T	protein-coding	3.34596699011991	2.97372417358743	3.29905834685373	3.02040312659403	2.58266225843245	2.87554310043025	2.75869150967733	2.90345315492695	-1.79534906493408	0.00808938586664908	0.0677490607261762
Merged-chr6-38669732-2	chr6	38669632	38669832	+	789.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101507, intron 1 of 4)	B3A|SINE|B2	6663.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	3.56301302349215	3.41777054038735	3.29969467431092	3.0842370170835	3.35269417806252	3.0792198404976	3.22821356412021	3.56134008031417	-0.0916637568754997	0.871521771433716	0.951646797914897
Merged-chr7-88271691-4	chr7	88271603	88271803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6382.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	8.04126856335633	8.36419766756703	8.11752733956179	7.92203345341943	7.71483551856813	7.88252159319258	7.87575284559766	7.23561937818505	-0.539965863105569	0.00896020011140586	0.0729438714886028
Merged-chr1-164138837-4	chr1	164138735	164138935	+	967.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011347, intron 9 of 15)	intron (NM_011347, intron 9 of 15)	-13000.0	NM_007976	14067.0	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding	5.1781663587293	5.29986888348318	5.04413901489522	5.1104623553466	4.80537615911286	5.35305512731018	5.33092061640972	5.4083753968591	0.136121267331879	0.671766239046476	0.864905117611895
Merged-chr2-25587957-4	chr2	25587850	25588050	+	968.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024616, intron 8 of 14)	intron (NM_001024616, intron 8 of 14)	-7851.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	5.35720794324732	5.18455953020655	4.89380309085134	5.76434166460323	5.08474953364168	5.07274926163995	4.90981808996225	5.26824472760292	-0.501165384471006	0.149748570503977	0.432166457180612
Merged-chr9-41153075-4	chr9	41152970	41153170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	4992.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	6.28490683337889	6.37570016828473	6.73339862456505	6.78635853928221	6.32696561091525	6.01056515230562	6.49617407800964	6.11795579675653	-0.469485351669772	0.0603751203741161	0.259538633476822
Merged-chr13-81712021-2	chr13	81711921	81712121	+	798.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028372, intron 1 of 1)	intron (NM_028372, intron 1 of 1)	604.0	NM_028372	72852.0	Mm.31095	NM_028372	ENSMUSG00000051098	Mblac2	2900024O10Rik	metallo-beta-lactamase domain containing 2	protein-coding	3.59875040075241	3.60850297330876	3.85419170659338	3.36956322430412	3.51274767873944	3.66034530638661	3.52819276391244	4.13925299731166	0.376714090180952	0.46647932468095	0.746420287776482
Merged-chr19-61265510-4	chr19	61265418	61265618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37100.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	7.67618336858368	7.46681354476092	7.22492594241389	7.59282921708523	7.46738188687184	7.19352470047177	7.4802543948668	7.26447816086397	-0.19101491954732	0.321869736045971	0.633337920661695
Merged-chr17-28528178-4	chr17	28528077	28528277	+	980.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2684.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	4.89147159989241	4.57400572307764	4.33354902667135	5.04884192393963	4.74268578686162	5.06445876654352	4.90275856941349	5.05225708247721	0.365443964444092	0.329288451805331	0.640534070590611
Merged-chr10-128536478-4	chr10	128536369	128536569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10610.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	6.63686014524148	6.72891462807887	5.81050957423475	6.51556350857935	6.73727912756854	6.78342901102202	6.71964329164927	6.69262998670695	0.372629489616336	0.141613549414346	0.418774858070781
Merged-chr1-34467719-4	chr1	34467584	34467784	+	970.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 5 of 14)	C-rich|Low_complexity|Low_complexity	7938.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	5.50047347295496	5.21990892837412	4.94553924468621	5.17028327799432	5.41076790135692	5.33356242770685	4.84323102470322	5.30945270210855	0.0504672497969962	0.87598078892261	0.953371302804582
Merged-chr1-144301694-4	chr1	144301584	144301784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-52580.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	5.25823472664341	5.58850142691962	5.56929753481122	5.08183044179864	5.2851867555026	4.85862360051194	4.60769318641047	4.57720394507412	-0.952442540469513	0.0108889342299447	0.0838994857710797
Merged-chr6-94269380-1	chr6	94269280	94269480	+	808.0	f0_balb.idr	intron (NM_001029850, intron 1 of 23)	MTC|LTR|ERVL-MaLR	14537.0	NM_010367	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	3.55516016240057	3.61180092862474	4.25718794991866	4.46784999043346	2.98319970920099	3.19338401056111	3.28974150336897	3.43231064260945	-2.83901606162228	1.31178296235132e-05	0.000352344903687564
Merged-chr13-56014206-2	chr13	56014106	56014306	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	121344.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	3.44555245839421	4.20346658586642	3.50571901243519	3.52570253161426	3.57088382884395	3.5624164918521	3.37189776642928	3.66805675124533	-0.507056523048584	0.350899452395228	0.658355003480413
Merged-chr6-48829820-4	chr6	48829711	48829911	+	880.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11177.0	NM_023056	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	4.60541681160471	4.57831949625257	4.37479545830247	3.98705328892719	4.30111720635018	4.27057002544333	4.43584552051273	4.03626971163872	-0.304262822662025	0.476200855737327	0.752764962035338
Merged-chr11-4833189-4	chr11	4833068	4833268	+	916.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252253)	promoter-TSS (NM_001252253)	-33.0	NM_001252253	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	4.02079159348846	4.4573625280681	4.18783771904832	4.35906622729095	4.77757696260709	4.6423162236891	4.67706424693734	4.7312792851239	0.964791432838439	0.00998733127159166	0.0788299237725242
Merged-chr18-23807805-4	chr18	23807713	23807913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	3843.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	7.72748020474985	7.43130347367474	7.53561488017888	7.69007880537397	7.44606986002452	7.51656634219499	7.66774680770878	7.48416400420111	-0.100371860306674	0.571252558610103	0.810468125758591
Merged-chr9-101251758-4	chr9	101251627	101251827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001161362, exon 1 of 14)	5' UTR (NM_001161362, exon 1 of 14)	105.0	NM_001161362	235542.0	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	8.11015556030286	8.16491872210012	8.85222166656091	8.26255079561848	7.95218510752988	8.28928125655754	8.26448566627367	8.36823914065871	-0.199598468637259	0.348022515697651	0.655882644125099
Merged-chr4-58585560-4	chr4	58585475	58585675	+	841.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32084.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	3.90651088477315	3.87833065905542	3.57702146486208	3.90107457741581	4.21944464275033	3.75570366836599	3.98307434512284	3.80391668435879	0.379458027167776	0.412321803652241	0.707519131955945
Merged-chr10-79883884-4	chr10	79883781	79883981	+	956.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011178)	TTS (NM_011178)	-2431.0	NM_015779	50701.0	Mm.262194	NM_015779	ENSMUSG00000020125	Elane	Ela2|F430011M15Rik|NE	elastase, neutrophil expressed	protein-coding	4.61689584454176	4.85039067833834	4.73417313967963	4.38072879600819	4.93611572141888	5.01128728821124	4.37745757672855	4.44111583258828	0.169609444796379	0.663911680988547	0.860780365686037
Merged-chr17-27897255-3	chr17	27897175	27897375	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001080769, exon 21 of 21)	3' UTR (NM_001080769, exon 21 of 21)	11967.0	NM_026836	68776.0	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	3.30348894591423	3.26662692258787	3.30388125427489	2.64268803096881	4.78660678010926	4.53280877622221	4.51140930381907	4.53262549781491	5.35263526567927	2.67029520786577e-18	7.09212472390588e-16
Merged-chr8-41073977-3	chr8	41073883	41074083	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 3 of 13)	intron (NM_001005863, intron 3 of 13)	-19187.0	NM_001005864	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	3.86086543767499	4.02981081969946	4.33007536980838	3.51231226810828	5.9758486140742	5.6156418238571	6.08826118866485	5.83012545234417	4.11015863267106	2.69935441911084e-29	3.09898948706275e-26
Merged-chr2-130295690-3	chr2	130295570	130295770	+	983.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110513)	promoter-TSS (NM_001110513)	-269.0	NM_001110513	228598.0	Mm.32582	NM_152993	ENSMUSG00000053552	Ebf4	Ebf3|O/E-4|Olf-1	early B cell factor 4	protein-coding	4.25258065026054	3.95827919119837	3.83564029304689	4.07946630264948	4.07277558864633	4.01090666272143	3.64752601803917	4.16897702789812	-0.132535816986431	0.768271170033365	0.909356419531329
Merged-chr7-121072198-2	chr7	121072098	121072298	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030691, intron 1 of 5)	intron (NM_030691, intron 1 of 5)	2332.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	3.76480902232454	3.52617189111214	3.41284929006934	3.32355116741554	3.6430576861605	3.33866329129984	3.28042778100171	3.52195543038448	-0.159873276626422	0.762891253518548	0.907015239695587
Merged-chr11-98597517-3	chr11	98597421	98597621	+	586.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195544)	promoter-TSS (NM_001195544)	-770.0	NM_001195544	192852.0	Mm.342821	NM_001195544	ENSMUSG00000086545	Lrrc3c	Gm12	leucine rich repeat containing 3C	protein-coding	3.06541379705603	3.52403778699412	2.99270019963233	3.5127124327891	3.14713048238237	3.75531077505562	3.36859871945218	3.48778274936515	0.520685966322114	0.396208942005722	0.695104735895268
Merged-chr11-77686051-4	chr11	77685961	77686161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024205)	promoter-TSS (NM_001024205)	-78.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	8.15794750176654	8.27930441057389	8.25426251661614	8.01080078806713	8.36087074795179	8.32452802847366	8.21542170079492	8.10355563095988	0.106313277559434	0.514749619188602	0.77722923027143
Merged-chr3-88607065-4	chr3	88606950	88607150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9157.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	6.68528138313756	6.68202660522384	6.63017442884292	5.9695449835982	6.41348371252097	5.84424853933517	6.30718132594145	6.11798326846864	-0.471156228089466	0.0934715018233503	0.334382471140586
Merged-chr6-71476850-3	chr6	71476732	71476932	+	739.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17045.0	NM_009543	22644.0	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	3.61787094668513	3.56564773005594	4.23226085810015	3.17019288706549	3.52144352926699	3.44235872882987	3.31314155664713	3.38709719049534	-0.89709133965928	0.126694002495263	0.3957151434293
Merged-chr9-71896094-4	chr9	71896012	71896212	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253864)	promoter-TSS (NM_001253864)	-16.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	4.99382015952917	4.77092915473888	4.73310790952615	4.99357304963188	4.99622819170958	4.98887214663961	5.31874203240485	4.84856589057491	0.317941593681055	0.333381800650275	0.644131513179354
Merged-chr11-101448405-4	chr11	101448297	101448497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027320)	promoter-TSS (NM_027320)	-15.0	NM_027320	70110.0	Mm.45558	NM_027320	ENSMUSG00000010358	Ifi35	2010008K16Rik|AW986054|IFP35|ifi-35	interferon-induced protein 35	protein-coding	6.0252576030554	6.42129383534792	5.66755212470143	6.23001179753861	6.56509137135205	6.34961438384634	5.99554007621347	6.22775007085808	0.277007684718652	0.312335583037548	0.624276492896485
Merged-chr17-33563305-4	chr17	33563215	33563415	+	913.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053214, intron 1 of 27)	intron (NM_053214, intron 1 of 27)	7608.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	4.34931189054668	4.56386700285452	4.48191378845726	4.51685797718274	4.32880138408372	4.5693665129954	4.57993120181812	4.63595441138378	0.0915862312299217	0.801219342131055	0.923340719847852
Merged-chr18-77758535-3	chr18	77758434	77758634	+	859.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357531, intron 9 of 10)	intron (NM_001357531, intron 9 of 10)	9265.0	NM_146089	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	2.48807974852264	2.43976476619747	2.56849160186564	2.66440021007258	3.07926103354307	2.96161264707888	3.12028537519541	3.23076157162106	2.57240217967738	0.000709658955143697	0.0102294076079735
Merged-chr9-89874737-3	chr9	89874661	89874861	+	846.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	-35014.0	NM_001357744	19417.0	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	2.85850244588755	3.01506528921563	2.85879609288039	2.57136460245073	3.16630182308347	3.4185725510396	3.52651876613983	3.35088496920696	2.28247338952472	0.00019045906544906	0.00349129173824327
Merged-chr9-96416564-4	chr9	96416462	96416662	+	942.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52131.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	4.17024035651142	3.91537247270619	4.42616180443341	4.32048363009586	3.87285996099112	4.03528925838657	4.47915936887046	4.46111484948073	0.0260589196484721	0.953466971335152	0.983444766711298
Merged-chr10-13501138-4	chr10	13501041	13501241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001330198, exon 1 of 8)	5' UTR (NM_001330198, exon 1 of 8)	113.0	NM_025799	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	7.97950758359034	8.07862195581986	7.74836287975294	7.79666767976546	8.16758688174837	8.0438076364619	8.18943749416459	7.76757346003508	0.193922776337855	0.284720311376122	0.596500575230052
Merged-chr3-95230475-4	chr3	95230377	95230577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038708, intron 1 of 4)	intron (NM_001038708, intron 1 of 4)	1534.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	6.06974239148028	6.22633899080816	5.81738882461471	5.99321517747723	6.18239282934132	6.16014465123949	6.03981186892698	6.08717414143443	0.133233300177175	0.574666327156854	0.812509673652696
Merged-chr11-78267991-4	chr11	78267876	78268076	+	886.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002004, intron 11 of 38)	intron (NM_001002004, intron 11 of 38)	6222.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	4.25577722489554	4.11982282184342	4.29907697084994	4.21459946366108	4.31792123715937	3.97409476295591	4.10179854112057	4.33754301499027	-0.0560567791362127	0.889208778755122	0.958476439206645
Merged-chr6-72347584-6	chr6	72347469	72347669	+	969.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026696, intron 1 of 3)	CpG	252.0	NM_026696	68364.0	Mm.52711	NM_026696	ENSMUSG00000058706	0610030E20Rik	1500031N04Rik|2810411C16Rik|AI461894	RIKEN cDNA 0610030E20 gene	protein-coding	4.97753254281932	4.84483608763085	4.79652954563692	4.67382635673064	5.04463235509914	5.24719860283139	4.73471828568612	5.07265817586225	0.437910997864825	0.183492863247661	0.480543562392038
Merged-chr13-59073836-4	chr13	59073765	59073965	+	917.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 16 of 17)	intron (NM_001025074, intron 16 of 17)	266168.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	4.23544046063269	3.94201972522333	4.10396094217358	4.09178715874198	4.31804153941663	4.02444016446125	4.21701209442319	3.90185896547375	0.105161583322707	0.802564132961754	0.923936032101707
Merged-chr1-165639741-4	chr1	165639635	165639835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5194.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	6.16116622756874	5.83058689868118	6.29816899268928	6.41240105873512	6.10635218903349	6.33873784792671	6.64227392342667	6.32991057866811	0.239621344533431	0.354076160687798	0.660831376621657
Merged-chr2-12108553-4	chr2	12108475	12108675	+	915.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_138462, exon 31 of 31)	non-coding (NR_138462, exon 31 of 31)	-192671.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	4.88176219149244	4.7865098151996	5.16266118047645	4.97208613639822	4.47820977390627	4.60829176683953	4.92627867056856	4.65101397299268	-0.595778135459906	0.0866408391293724	0.321135001654657
Merged-chr10-57835283-4	chr10	57835212	57835412	+	912.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40768.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	4.79848002854912	5.17233030806036	5.71823020915056	5.64817145850623	4.48620975252082	4.61482768817494	4.77649252177469	4.87513557913976	-1.37204548294005	0.000265131184722962	0.00457830485138179
Merged-chr13-97208280-4	chr13	97208160	97208360	+	876.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9903.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	4.61558083751413	4.20199384140353	4.25321982502267	4.23847350753995	4.71563535140704	4.33268556853788	4.08830334073059	4.29641830559735	0.143449126856461	0.729835498067669	0.892804127302382
Merged-chr7-141440803-4	chr7	141440685	141440885	+	925.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360523, exon 8 of 16)	exon (NM_001360523, exon 8 of 16)	-2911.0	NM_001360724	68267.0	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	4.76946923053841	4.28398924368702	4.38536869899978	4.52347547332561	4.51477013948122	4.2661494719784	4.32066335431928	4.83149065498843	0.00624173401976334	0.987380378854178	0.995271042049364
Merged-chr13-37249724-3	chr13	37249604	37249804	+	822.3444820000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95641.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.83147670852509	3.85444450576917	4.40724894385213	4.486436245428	3.52309538079249	3.45409223607584	3.76348019980299	3.40681815580977	-1.92179475509903	0.00031272494585224	0.00524121707577504
Merged-chr8-126936146-3	chr8	126936028	126936228	+	883.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024214, intron 4 of 4)	B2_Mm2|SINE|B2	9793.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	3.58428475818972	4.0433220797901	3.70724812371464	3.36191607825724	4.35093412312825	4.14456616034369	4.0010434453858	4.01661539011477	1.2547549937696	0.00882177919902467	0.0721090286641453
Merged-chr6-83868113-4	chr6	83868014	83868214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36373.0	NM_146169	232164.0	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	5.20216825362963	5.19534810111304	5.04110384219567	4.92916626050735	5.11501144308483	5.14545759729599	5.05056599200013	5.22946968135448	0.0969629487284468	0.749471376005061	0.901353773298373
Merged-chr14-73117132-4	chr14	73117038	73117238	+	833.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25372.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	3.73164616748615	3.5872216904722	3.63098093362559	3.7294485951543	3.78870763821893	3.30988108369693	3.45023920020606	3.77761791391624	-0.207812209281363	0.680595368117574	0.868928920613391
Merged-chr6-38782892-4	chr6	38782798	38782998	+	724.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	54413.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	3.51574987903626	3.78009036672954	3.84591810353396	3.84486586984987	4.00478128489616	3.69343069950649	3.8297164641043	3.79428784706697	0.239838903594793	0.604223453881985	0.828424937100762
Merged-chr9-7259918-4	chr9	7259819	7260019	+	883.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-12595.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	3.89890812855643	4.41650656629644	3.9509100632629	4.18178649200539	4.01117061351742	3.65792866016014	3.98348405088973	4.04561428012688	-0.526844672572231	0.247120502684442	0.558168726560377
Merged-chr10-44268433-4	chr10	44268351	44268551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_053069, exon 1 of 8)	5' UTR (NM_053069, exon 1 of 8)	112.0	NM_001358596	11793.0	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	8.10730844912981	8.52182341463547	8.32146563776353	8.25436551586578	8.43165016388267	8.66169313875649	8.57465596896022	8.46348707520649	0.282195123206257	0.0870383400257055	0.321728259728112
Merged-chr1-86359521-4	chr1	86359442	86359642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015507)	promoter-TSS (NR_015507)	-32.0	NR_015507	319336.0	Mm.389155	NR_015507	ENSMUSG00000073627	C130036L24Rik	-	RIKEN cDNA C130036L24 gene	ncRNA	8.60197216186461	8.69188182223912	8.4715647771244	8.53114058669133	8.79135944817313	8.89208765331533	8.87697598081123	8.48651259760249	0.244832990640173	0.130219646815869	0.401654049047651
Merged-chr7-68692907-4	chr7	68692816	68693016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56322.0	NM_001042592	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	6.48713973752564	6.60372888315029	6.47106524542755	5.81812148580542	6.76461694298456	7.11791043419233	6.83412087159245	6.41332535207615	0.634935696072856	0.0196550577929961	0.126494336224925
Merged-chr1-71735745-4	chr1	71735653	71735853	+	946.229126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82418.0	NR_040308	100042814.0	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	Gm15456	apolipoprotein L 7d	ncRNA	4.57292379510456	4.04883072791617	4.79115432487185	4.49582332587844	4.35962256739095	4.48919748664685	4.8001491366432	4.60956432366196	0.158977405776472	0.691555370543133	0.874549631236956
Merged-chr3-104403863-4	chr3	104403771	104403971	+	818.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108047.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	4.36272759154633	4.28891153049335	4.08131629100673	4.40916454012735	4.04300755256438	4.44902797919613	4.11542891059958	4.69217544448441	0.111949661005835	0.790566748184625	0.918840742585233
Merged-chr8-53607665-2	chr8	53607568	53607768	+	818.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146208, intron 4 of 9)	MTB|LTR|ERVL-MaLR	31397.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	3.66498327159324	3.38197307399511	3.35302112702707	3.01207429456695	3.37227108248568	3.46843802364923	3.50391282656145	3.40877819116212	0.262528590582822	0.633378284111243	0.844651176689519
Merged-chr11-8787820-4	chr11	8787717	8787917	+	964.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123282.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.0925815582805	4.91615190784638	4.74427173309379	5.26451392321234	5.00158432363438	4.65953030508435	4.55263398410445	4.96173047400454	-0.430927006660614	0.224897574939917	0.53334646858495
Merged-chr14-20393635-4	chr14	20393552	20393752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155747)	promoter-TSS (NR_155747)	-18.0	NM_025440	66242.0	Mm.23747	NM_025440	ENSMUSG00000049960	Mrps16	1500011E11Rik|Mprs16|S16mt	mitochondrial ribosomal protein S16	protein-coding	8.99251691819227	9.03435474640013	8.9401796616561	9.0568350596494	8.78179886345358	8.83106543488846	8.89660396492696	8.74955340343039	-0.241000680240174	0.0818567198846936	0.310503508141883
Merged-chr14-73334049-4	chr14	73333946	73334146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-E-int|LTR|ERVL	-8224.0	NM_009029	19645.0	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb|pp105	RB transcriptional corepressor 1	protein-coding	5.98722089407684	5.93587652514621	5.82084996086279	6.30550091788844	5.92413521435819	6.36915578604327	5.8890477565835	6.43138838040127	0.197266826803998	0.471066217339607	0.749705558503237
Merged-chr6-30357976-4	chr6	30357859	30358059	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33061.0	NM_172735	232679.0	Mm.29780	NM_172735	ENSMUSG00000039130	Zc3hc1	1110054L24Rik|AU018540|AU019789|HSPC216|Nipa	zinc finger, C3HC type 1	protein-coding	3.83311532926768	4.23745532985838	3.52457904777077	3.86603925603443	4.16128349944591	4.34115784670118	4.0204091803611	4.03556979934931	0.664776042126859	0.151409591437717	0.435022813371129
Merged-chr13-44482885-4	chr13	44482796	44482996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	43169.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	6.54889601939181	6.39719262802696	6.09339719839067	6.54709880424204	6.64966771212649	6.62654290712084	6.60845119654304	6.52931899932912	0.26998105172428	0.222303635152826	0.530315094234949
Merged-chr2-180043879-4	chr2	180043778	180043978	+	956.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178750, intron 1 of 10)	intron (NM_178750, intron 1 of 10)	1395.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	4.95791307144493	4.64455346371858	4.56662125179087	4.64498572001828	4.57851965272136	4.36463045382633	4.58645899634218	4.8600720790085	-0.208578123439348	0.566123539559984	0.807783748011785
Merged-chr9-85326138-4	chr9	85326040	85326240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160379, intron 2 of 2)	AT_rich|Low_complexity|Low_complexity	984.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	6.11185031448311	5.42352635589729	6.05147936762696	5.75534818620382	6.35077242899141	6.04835903529398	6.3164171938661	6.10854703866585	0.572869020724932	0.032398306812698	0.176226825675032
Merged-chr10-53596846-4	chr10	53596742	53596942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025541)	promoter-TSS (NM_025541)	-119.0	NM_025541	66403.0	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	8.43595718466604	8.4138424308556	8.39029055878532	8.61172598039284	8.36194237505292	8.29530857227655	8.67665270510232	8.47713581618724	-0.0135775662805347	0.934001038608899	0.976229954877281
Merged-chr4-126536664-4	chr4	126536549	126536749	+	903.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3191.0	NM_153177	76850.0	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	4.29124719001727	4.2266953221867	4.45485187024799	4.4533847482605	4.28739194393234	3.88500775930652	3.98471121319542	4.48948978963281	-0.425225823275204	0.314230971458255	0.626303588947018
Merged-chr6-145306881-4	chr6	145306784	145306984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56332.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	8.03379537497332	7.84746393175382	7.99334723985403	8.12018733916007	8.43938430360903	8.3793612309393	8.71798154074169	8.38479904705676	0.612829496019078	0.000261950888573409	0.00453769829587898
Merged-chr11-120951025-4	chr11	120950935	120951135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038654, intron 1 of 4)	CpG	1968.0	NM_001038654	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	5.50376189465329	5.39438558077893	5.08364907035564	5.40784615405052	5.85842239536388	5.43993082376739	5.74723248179749	5.63173861931056	0.558806726709233	0.047768556964084	0.225472023617144
Merged-chr4-141078377-4	chr4	141078293	141078493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025383)	promoter-TSS (NM_025383)	-36.0	NM_025383	66147.0	Mm.21187	NM_025383	ENSMUSG00000028923	Necap2	1110005F07Rik|AA409105|C78898|NECAP-2	NECAP endocytosis associated 2	protein-coding	7.16966735162065	7.14668302632867	6.59174531049589	6.8830396046162	7.25252189025042	7.21984073143036	7.03169070679418	7.18776989774259	0.289854087673389	0.167776456408997	0.459695448875569
Merged-chr7-27356085-4	chr7	27355984	27356184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138676)	promoter-TSS (NM_138676)	-76.0	NM_138676	192192.0	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	8.22078103177788	8.24428237806153	8.12563312656509	7.95300800592533	8.07224833227079	8.2189643811605	8.35605686831128	7.98115470815356	0.0357671659027596	0.835569425309444	0.937473068238396
Merged-chr4-101694706-4	chr4	101694587	101694787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22720.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	6.72546628389157	6.34185813486794	6.58305526534545	6.30149961925977	6.20905181665593	6.52570168240945	6.42190357015548	6.189117655064	-0.220678366216824	0.348608281360521	0.656307354205775
Merged-chr19-11404665-4	chr19	11404555	11404755	+	827.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3006.0	NM_029499	64380.0	Mm.440715	NM_029499	ENSMUSG00000024675	Ms4a4c	5830413L19Rik|AI449185|Ms4a9	membrane-spanning 4-domains, subfamily A, member 4C	protein-coding	3.88880089211393	3.77610318101513	3.63143903798418	3.80458873947127	3.95799139214828	3.68920595842108	3.67309904574812	3.83951304703732	0.0673269454653626	0.882785210971621	0.955814918609989
Merged-chr6-57571789-4	chr6	57571723	57571923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-9169.0	NM_025992	67138.0	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	6.12350472437968	6.22188556358364	6.08015936663837	6.77181299081809	6.58569074319568	6.23605224419261	6.75359067549291	6.41133389896997	0.234351688871086	0.38758464538738	0.688440782422787
Merged-chr1-131094627-3	chr1	131094519	131094719	+	704.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	MIR3|SINE|MIR	3224.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	3.15265615452313	3.33588435684524	3.21372176091403	2.89852630012929	3.04456921463328	3.49666626868785	3.2586955507168	3.26989437804961	0.453862444543731	0.42947726428383	0.720390295615854
Merged-chr4-150909900-4	chr4	150909793	150909993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020569)	promoter-TSS (NM_020569)	28.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	7.94883324397664	7.78586273538345	7.53244684715951	7.62907127300689	8.04248128524872	8.20049257440265	7.67237959736614	7.67965591651134	0.246859716666152	0.218339279115602	0.525572253911716
Merged-chr3-127020258-4	chr3	127020088	127020288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 14 of 47)	intron (NM_001327938, intron 14 of 47)	-21736.0	NM_178655	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.49928291488246	3.44381119353617	3.87920265312029	3.96370985729218	3.94905714099613	3.61559353585964	3.86238822427819	3.92287737118945	0.341483368228613	0.495115075600313	0.765543520498635
Merged-chr3-88491368-4	chr3	88491280	88491480	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	1932.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	5.69273944122531	5.44740325567023	5.78427999173743	5.51245640655549	5.35570489272232	5.21140243105284	5.59272335816874	5.21019330282758	-0.440640597520174	0.125332097928244	0.392909640979277
Merged-chr5-73491930-6	chr5	73491844	73492044	+	992.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178896, intron 1 of 10)	CpG	918.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	4.18714983235602	4.05786055749549	4.14199404888731	4.05524561142904	4.25441053097022	4.21882587873998	4.25530977103444	4.13949268530685	0.290645216992136	0.45871094228468	0.741485810075879
Merged-chr18-4055718-4	chr18	4055632	4055832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS4A|LTR|ERV1	-110100.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	5.87381753021446	5.43257115799781	5.92077225098453	5.58375969961853	5.97878897457638	6.07359466318517	6.09663692455675	6.30141285178869	0.655545832503912	0.0116396586648591	0.0879417539651846
Merged-chr16-4763465-2	chr16	4763365	4763565	+	560.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357050, intron 2 of 5)	intron (NM_001357050, intron 2 of 5)	6519.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	3.12328722582324	2.85097181835252	3.12367010384879	3.14766476594162	3.40459059416404	3.40858728309741	3.11259543605087	3.18173224089154	0.815158877386015	0.152060971172632	0.435906076000675
Merged-chr7-27220213-4	chr7	27220101	27220301	+	924.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181593, intron 1 of 6)	intron (NM_181593, intron 1 of 6)	8396.0	NM_181593	233011.0	Mm.30963	NM_181593	ENSMUSG00000003752	Itpkc	9130023N17Rik	inositol 1,4,5-trisphosphate 3-kinase C	protein-coding	4.32012768718416	4.46626725458819	4.74440731585991	4.30036088771998	5.0392117360581	4.68260217846302	4.79111347815864	4.62821003253122	0.752505158282194	0.0394640277964126	0.200087843435049
Merged-chr10-118868059-4	chr10	118867940	118868140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014390, intron 2 of 2)	CpG	863.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	6.9265265588889	7.76976029352394	7.49762476659985	6.56709091154354	7.78738808832135	7.70240201673716	7.98276225717484	7.072041306191	0.538601019716158	0.0703324538931189	0.284060794648701
Merged-chr11-83717242-4	chr11	83717154	83717354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8250.0	NM_007969	14038.0	Mm.1650	NM_007969	ENSMUSG00000000983	Wfdc18	Expi|Kal1|WDNM1	WAP four-disulfide core domain 18	protein-coding	6.46400406745801	6.31549485627128	5.89176033318971	5.46120116546488	6.03297690657349	6.24173734847259	5.54621820299205	5.65725297952365	-0.285270167410268	0.390068703270988	0.690245822100553
Merged-chr15-93387654-4	chr15	93387548	93387748	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347097, exon 7 of 8)	exon (NM_001347097, exon 7 of 8)	10686.0	NM_001347097	67197.0	Mm.293181	NM_026025	ENSMUSG00000022635	Zcrb1	2700088M22Rik|Madp-1	zinc finger CCHC-type and RNA binding motif 1	protein-coding	5.56844829136303	5.16078723943441	5.35276902075141	5.566424861618	5.31054098762288	5.37167295823259	5.4112171982369	5.15833215183563	-0.206045391668137	0.481762933321797	0.756784159403958
Merged-chr7-90030908-5	chr7	90030827	90031027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	1768.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	5.32974641770509	5.46644057820085	6.04471912139559	5.57826440029278	5.6321357878779	5.75580076451951	6.30532918157524	5.8516301042061	0.456677508274901	0.136800302634616	0.411349382676314
Merged-chr13-112752414-4	chr13	112752324	112752524	+	961.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48353.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	4.88123260766558	4.63312400626726	5.08008456682008	4.72424611537311	5.00505677384931	4.86576960298609	4.99288058483744	4.8053093370731	0.194274304658914	0.558580724707952	0.803265195951014
Merged-chr7-113513235-2	chr7	113513135	113513335	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027379)	promoter-TSS (NM_027379)	-599.0	NM_001285831	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	4.6924292869197	4.92001545345695	4.80834864512422	4.64157675839277	4.73250125055321	5.01552641587975	4.89026306971479	4.72959373553003	0.164158959473806	0.623908672385864	0.839195335242146
Merged-chr19-46609812-4	chr19	46609719	46609919	+	986.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	10713.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	5.20066204241325	5.15132428284547	4.9246969402767	5.42184439570451	5.00931671382072	5.21088979912115	5.17595137588159	5.28789199680632	-0.0701472031746819	0.823015661372196	0.932185203682946
Merged-chr13-52078738-4	chr13	52078626	52078826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-18015.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	7.04412181738857	7.82050496722301	7.19671812946822	6.84967279098409	7.17094446317934	7.28297983093054	7.02199721582019	6.51054084903687	-0.342913627893553	0.215798502609359	0.522098974396461
Merged-chr7-45068072-4	chr7	45067964	45068164	+	944.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163684, intron 1 of 8)	B2_Mm2|SINE|B2	5635.0	NM_025533	66394.0	Mm.272139	NM_025533	ENSMUSG00000003421	Nosip	2310061K06Rik|CGI-25	nitric oxide synthase interacting protein	protein-coding	4.55316110480371	4.88717059629186	4.67013506353967	4.89057842988857	4.35521175470838	4.46262854714614	4.16359415592653	4.46723910563265	-0.906848913297454	0.0147997258188967	0.103831932123994
Merged-chr7-105581325-4	chr7	105581223	105581423	+	929.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001253886, exon 1 of 14)	5' UTR (NM_001253886, exon 1 of 14)	168.0	NM_001253885	11785.0	Mm.38469	NM_009685	ENSMUSG00000037032	Apbb1	Fe65|Rir	amyloid beta (A4) precursor protein-binding, family B, member 1	protein-coding	4.30767777324008	4.20546349350956	4.47239960647196	4.2689581045285	3.85063846648505	4.34516184860368	4.28890497281012	4.54398536375855	-0.101064098361783	0.810314559823314	0.92679579587174
Merged-chr6-51567465-3	chr6	51567357	51567557	+	857.2333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 2 of 6)	intron (NM_001361577, intron 2 of 6)	22164.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	4.38445671757345	4.41125955055024	3.88047405464954	4.09272714345161	3.73044023400502	3.77706428487229	3.64264634648261	3.38657827028771	-1.62627308925439	0.00115049922612538	0.0150701848392305
Merged-chr6-47396136-4	chr6	47396030	47396230	+	741.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57602.0	NM_001355551	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	4.02393947476106	3.91877829997218	4.0760901719882	4.125779442725	4.47850229717728	4.43526853084416	4.15535722847482	4.49958228139804	0.875136400526537	0.0281166571114388	0.160490419930642
Merged-chr1-152720818-4	chr1	152720712	152720912	+	775.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-29739.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	4.09704315255414	3.50990520346601	4.00679174109532	4.00242540356737	4.1320091363523	3.74556719662363	4.24155161033795	3.90667036406768	0.271898854074648	0.566821018143481	0.808046329870516
Merged-chr14-48189519-2	chr14	48189410	48189610	+	729.166626	f0_balb.idr|f1_balb.idr	intron (NM_033602, intron 2 of 5)	intron (NM_033602, intron 2 of 5)	-9206.0	NR_003630	624367.0	Mm.445185	NM_001037921	ENSMUSG00000021846	Gm6498	EG624367	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	3.58352707024633	3.9569421253119	3.41848224507271	4.06901869351708	3.19452720837379	3.04054236053371	3.46233239826515	3.15857777299462	-2.01244207952143	0.000897068772899735	0.012355351816221
Merged-chr1-171366099-3	chr1	171365995	171366195	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4078.0	NM_027893	71740.0	Mm.263414	NM_027893	ENSMUSG00000006411	Nectin4	1200017F15Rik|Prr4|Pvrl4	nectin cell adhesion molecule 4	protein-coding	3.79247202001455	3.6379358533956	3.86940472933076	2.56679670822971	5.88888670197581	5.80979419765028	6.08187564082004	6.00208174956887	7.30142593894188	6.27423211213087e-29	6.9780244923338e-26
Merged-chr9-123850250-4	chr9	123850163	123850363	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148925, intron 1 of 18)	intron (NM_148925, intron 1 of 18)	1398.0	NM_148925	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	5.50522890361599	5.7240649173208	4.76955912453109	4.63784692200862	5.11625890527574	5.38001078913483	4.86960948748266	4.92838240267915	-0.281186114695364	0.487473349486511	0.76080755434401
Merged-chr17-43458790-3	chr17	43458673	43458873	+	883.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081178, exon 21 of 21)	3' UTR (NM_001081178, exon 21 of 21)	44000.0	NM_008585	17287.0	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding	3.6822329412	3.5810094016642	3.41065863604831	3.36423333384593	3.89583275150142	3.58523120678454	3.51277336156859	3.40896537441788	0.371670228540719	0.466190523741851	0.74629927630325
Merged-chr13-63140005-4	chr13	63139909	63140109	+	929.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 5 of 15)	intron (NM_001289926, intron 5 of 15)	-100020.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	4.65031395422175	4.3428522283364	4.6510757353616	4.82885938441282	4.43017283722759	4.28962340901497	4.38810147521057	4.61057564250214	-0.461711832354634	0.222130971117445	0.530127758362736
Merged-chr7-79715762-4	chr7	79715629	79715829	+	971.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1543.0	NM_001291222	16576.0	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	5.38856804571303	5.19113453453265	5.69096231775927	5.40944927567493	4.87691887119939	5.01190194439013	5.49601059737259	5.46808920222713	-0.349191407622295	0.286423369867328	0.598066504135974
Merged-chr18-60977990-4	chr18	60977899	60978099	+	990.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009792, exon 4 of 7)	exon (NM_009792, exon 4 of 7)	14445.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	4.4392306726429	4.36809914917246	4.56313211219865	4.71754878708969	4.54309657582274	4.22255582685441	4.61714450277426	4.56017245993259	-0.097194791763755	0.796469755321387	0.921160807130199
Merged-chr6-56652402-3	chr6	56652323	56652523	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	52276.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	3.54468402817339	3.58805322434596	3.64778905918052	3.31399844321228	3.3841625813553	3.6620887909418	3.53083989428698	3.37247174447933	-0.102592534964792	0.840211550535136	0.939246749249071
Merged-chr12-102354649-4	chr12	102354547	102354747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 4 of 9)	intron (NM_177620, intron 4 of 9)	71006.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	5.66272401866069	5.9061964122246	6.42721131933422	6.32850936630133	6.06336955586025	5.9001908521202	6.57074349522116	5.94478103147086	0.038111675007409	0.898133096787956	0.962020942880123
Merged-chr18-20743024-7	chr18	20742934	20743134	+	951.4761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	3370.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	3.13139968020173	3.20472335725417	3.31750547444712	3.46408738501632	3.39675571683678	3.48740546402617	3.51464589207617	3.25684737708866	0.415208514658286	0.439010965332887	0.726908939737358
Merged-chr6-52011782-4	chr6	52011668	52011868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018773, intron 1 of 12)	intron (NM_018773, intron 1 of 12)	781.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	6.11793780108459	5.82900918073136	5.94581780118271	6.0483777238311	6.26459451714296	6.40908096638826	5.93838873159805	6.17386413632828	0.333449878007432	0.169490768443879	0.462161476887795
Merged-chr12-51678525-4	chr12	51678396	51678596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172098, intron 1 of 15)	MTD|LTR|ERVL-MaLR	-12470.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	5.14707464010872	5.05808188969628	5.00995788432934	5.41761026499244	5.19559563284155	5.07405578410407	5.18606335940425	5.46048570643735	0.0899077026744546	0.774417530609219	0.911820181152855
Merged-chr12-36036875-4	chr12	36036791	36036991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	5587.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	7.05113104610091	7.10684501260135	6.87667404368877	7.36431599688286	6.8353512849858	6.69958519968073	6.487725550348	6.66756633589251	-0.617332867517766	0.00420688565137599	0.0417050019191214
Merged-chr12-118198927-3	chr12	118198828	118199028	+	768.333313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	5' UTR (NM_010060, exon 1 of 82)	5' UTR (NM_010060, exon 1 of 82)	115.0	NM_010060	13411.0	Mm.390540	NM_010060	ENSMUSG00000018581	Dnah11	Dnahc11|avc4|b2b1203Clo|b2b1279Clo|b2b1289Clo|b2b1727Clo|b2b598Clo|iv|lrd	dynein, axonemal, heavy chain 11	protein-coding	4.29123449922472	3.90613166950121	4.48262213942462	3.82663341618077	4.07130116238964	4.03475235237574	4.35090888372496	4.01479567524553	-0.0421387995089747	0.925884126778699	0.972702408158768
Merged-chr9-75409363-4	chr9	75409222	75409422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027418)	promoter-TSS (NM_027418)	37.0	NM_027418	50772.0	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	6.77736160880458	6.94811791805138	6.59073895582517	6.78899380139322	7.0506443729535	6.81787941548336	7.05084884241509	7.05860857274992	0.301752363591826	0.130226220429083	0.401654049047651
Merged-chr13-119358909-4	chr13	119358803	119359003	+	935.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308506, intron 12 of 16)	MTD|LTR|ERVL-MaLR	50108.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	3.4797355481736	3.49559067603868	4.04135019021548	4.16455142076421	4.12184266248423	3.7943602538292	4.1105354705934	4.28635099662743	0.655886860009749	0.209671997917436	0.514168095492496
Merged-chr8-46735731-4	chr8	46735624	46735824	+	824.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045750, intron 2 of 2)	intron (NR_045750, intron 2 of 2)	3791.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	3.92491573259158	3.96100371003565	3.7245346893351	3.93729361864591	3.87546076505923	3.72715373212382	3.71028691722595	3.82676068951987	-0.300595125836463	0.501107406555716	0.769095113768232
Merged-chr11-98776010-4	chr11	98775946	98776146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145434)	promoter-TSS (NM_145434)	-669.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	6.70938692725921	7.11874258615199	6.75459999425668	6.65456365999175	6.62761976414576	6.87209893586166	6.77638667658619	6.56370485729311	-0.152556110443818	0.487126787703183	0.760577292750831
Merged-chr10-84516604-4	chr10	84516500	84516700	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17288.0	NM_175451	216197.0	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	5.08366908972315	4.46598932746594	5.14873107069926	5.48835987066257	5.16922046954156	4.96830743246581	5.02657245658868	5.17605742697153	-0.0440354373187245	0.905661902702454	0.964930449989641
Merged-chr13-110896085-4	chr13	110895971	110896171	+	974.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131194, intron 2 of 2)	intron (NR_131194, intron 2 of 2)	-7428.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	5.43125498352331	4.67598820319468	5.63681017295876	5.65628597515414	5.51607121930237	5.06916942129195	5.2894432298874	5.50898718651108	-0.0856425163805851	0.810964010528413	0.926854276252049
Merged-chr2-180967187-4	chr2	180967105	180967305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177708)	promoter-TSS (NM_001177708)	-20.0	NM_145760	228998.0	Mm.33765	NM_145760	ENSMUSG00000027575	Arfgap1	AI115377|Arf1gap	ADP-ribosylation factor GTPase activating protein 1	protein-coding	6.86031793439278	6.80543121854103	6.77806308532167	6.80570446163571	6.73844578785854	6.83439168135941	6.90464919360673	6.95977417766667	0.063485159382313	0.742454310430887	0.898494026733066
Merged-chr12-102694990-4	chr12	102694887	102695087	+	914.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	9882.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	4.45417051118535	4.47616949311257	4.36817642176126	4.35286699519482	4.37323044609848	4.45114203875201	4.43460160493542	4.74896067900426	0.220399257486666	0.549887741316133	0.798182929229814
Merged-chr11-104442403-6	chr11	104442325	104442525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081045)	promoter-TSS (NM_001081045)	-134.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	5.027615841118	5.08316572956067	4.98994881817375	4.70307797623192	5.69618779917093	5.84454615431257	5.75209406191148	5.44289405933401	1.35325463217985	4.14536047016023e-06	0.000125665508051761
Merged-chr12-76596499-3	chr12	76596378	76596578	+	846.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 32 of 35)	intron (NM_013675, intron 32 of 35)	-48553.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	3.67794356458611	3.91855708050878	3.78374467942451	4.11745016042737	3.6474244360867	3.8506397253423	3.66422467136763	3.50099222630237	-0.686721053069629	0.153907692505341	0.438884485591029
Merged-chr11-61407977-4	chr11	61407907	61408107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-29932.0	NM_026183	67473.0	Mm.100741	NM_026183	ENSMUSG00000010122	Slc47a1	1300013J15Rik|AI036982|MATE1|mMATE1	solute carrier family 47, member 1	protein-coding	5.87357551563872	6.04405854509723	5.59373690004219	5.6656048537647	5.90760125411016	6.02624816208122	5.7001623804522	5.9799211456016	0.173008010603793	0.507940159016171	0.773146987545967
Merged-chr13-42103127-4	chr13	42103014	42103214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	51093.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	5.93354188125788	5.7351135386858	5.69223637816198	6.03198047111719	5.83594710252067	5.94570235331675	5.8822295696841	6.03595911874219	0.0846814970932387	0.736921000255651	0.896132094326226
Merged-chr1-13370580-4	chr1	13370487	13370687	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	1842.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	4.77123363766846	5.27600235327117	4.49218656358365	4.33767598697446	5.64725666261026	5.46011064445611	5.20290330058408	5.13375286991733	1.16751249312779	0.0021669107315681	0.0248651521783469
Merged-chr3-137846736-4	chr3	137846648	137846848	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-17739.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	5.28210833564458	5.52220330528858	5.25230902691654	5.52973840195998	5.52108780382778	5.15437763664003	4.91371651067176	5.04737964396388	-0.390480222898701	0.221604851991998	0.529689101713906
Merged-chr1-191396677-3	chr1	191396578	191396778	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_144880, exon 1 of 13)	5' UTR (NM_144880, exon 1 of 13)	363.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	4.93288754780767	4.937717060985	5.11037056177818	4.63406683044517	5.40562977678828	5.28480116120187	5.20984105745384	5.42567977994943	0.843379950217049	0.00669602473175314	0.0589142576491294
Merged-chr1-84350454-4	chr1	84350349	84350549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65804.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	8.18563996313259	8.09883373190879	8.53361551332175	8.51292870770561	7.99830546859197	8.23680188823362	8.32317726765458	8.15090929567199	-0.219544650634151	0.226465997861881	0.535091228607828
Merged-chr7-82867133-4	chr7	82867048	82867248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175366)	promoter-TSS (NM_175366)	-185.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	7.0369199191868	6.96050647217546	6.92810706716661	7.64840811361058	7.70081288932895	7.43331051727211	7.99901166716831	7.57992855201785	0.662981174239716	0.00625592366568533	0.0559550629052295
Merged-chr3-136756265-4	chr3	136756151	136756351	+	904.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	86185.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	4.51363912405654	4.62408738887265	4.16069147359989	3.92745571914305	4.70989656417629	4.606639487953	4.28559788913235	3.99680973717399	0.243944425494286	0.590014629351001	0.820711952132554
Merged-chr6-108695463-3	chr6	108695374	108695574	+	956.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34540.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	4.31136866162414	3.83616665696958	3.76145370945012	4.02017050357057	3.83703175424842	3.51350945499281	3.63703140487203	3.58995372276836	-0.996966597083582	0.0431895025382122	0.211502277342099
Merged-chr1-166802158-4	chr1	166802065	166802265	+	866.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120320.0	NM_001347135	240894.0	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding	4.25411525935729	4.32197333701707	4.47547361202511	4.71495848653108	4.2134247434441	4.28112371965515	4.5326816531605	4.58856068794293	-0.143694279814382	0.718357368558449	0.887534808097726
Merged-chr3-106558438-4	chr3	106558328	106558528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025582, intron 3 of 6)	intron (NM_001025582, intron 3 of 6)	-10626.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	6.50131080356654	6.16258322235251	6.65492022045975	6.66581010779381	6.29716522463191	6.14453700108962	6.67679107979001	6.14470897569019	-0.266380333284531	0.288604581386559	0.60062527040857
Merged-chr4-155066987-4	chr4	155066879	155067079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042407)	promoter-TSS (NM_001042407)	-51.0	NM_001042407	668173.0	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	8.31887340906396	8.46902986103875	8.02107237950984	8.18910880109771	8.18656030632752	8.22541878364752	8.37015541196426	8.09559805093243	-0.0475903910933503	0.781847651999626	0.915127881120275
Merged-chr16-77016177-4	chr16	77016080	77016280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	2111.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	5.99660475886989	5.69366811044435	5.48785454897619	6.18115993745518	6.19274593154672	5.75689387087947	5.98766457972877	5.76401289952849	0.100016878261143	0.730289240987883	0.893000516342052
Merged-chr14-34673854-4	chr14	34673763	34673963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301330)	promoter-TSS (NM_001301330)	-65.0	NM_001004436	218914.0	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	8.03504652844183	7.91446968370334	7.84361752770895	8.11436257260361	8.09671876007956	8.01347903303509	8.29592321115505	7.98383612550291	0.150451674725787	0.37374590874997	0.677211638825943
Merged-chr6-128408747-4	chr6	128408643	128408843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133927)	TTS (NM_133927)	8977.0	NM_001162858	60345.0	Mm.269883	NM_021717	ENSMUSG00000001520	Nrip2	AW491344|NIX1	nuclear receptor interacting protein 2	protein-coding	6.03811578927837	5.77009386286633	6.22854088490077	6.49133151347255	5.65349010602552	4.99643290286214	5.81040005609617	6.05510090773407	-0.767425948839454	0.0205823921958133	0.130515286780026
Merged-chr15-59397456-2	chr15	59397356	59397556	+	855.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	ORR1D2|LTR|ERVL-MaLR	23258.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	2.76379409493496	2.49458851607993	2.8891181522899	2.78146300615742	2.58856400199162	3.05838122505	2.93531116343125	2.82666135350412	0.544351296325888	0.415147278141211	0.709504359241972
Merged-chr1-21161867-3	chr1	21161732	21161932	+	847.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56743.0	NM_001290679	75712.0	Mm.304763	NM_029398	ENSMUSG00000025933	Tmem14a	5730496E24Rik|C85783|PTD011	transmembrane protein 14A	protein-coding	3.19224339933193	3.49828299388493	3.65384456195461	3.43450835434994	2.88617867835275	2.97510096609382	2.79413663774245	3.00700528539329	-2.49423184936196	0.000194771021379727	0.00355568261882215
Merged-chr14-36953362-3	chr14	36953287	36953487	+	885.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027045, intron 1 of 10)	Lx9|LINE|L1	-12123.0	NM_001347502	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	3.81380865478204	3.93531014864565	3.48292073556488	3.71324118703351	4.09611712288518	3.59839913814985	3.58955334128373	3.71091208199413	0.0939375678863526	0.850647503687557	0.943633424218446
Merged-chr8-84937398-3	chr8	84937305	84937505	+	900.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019945)	promoter-TSS (NM_019945)	-52.0	NM_019945	56527.0	Mm.154614	NM_019945	ENSMUSG00000053693	Mast1	9430008B02Rik|SAST|SAST170	microtubule associated serine/threonine kinase 1	protein-coding	3.95367255775401	3.88952854330345	3.95424303966244	3.77319434286983	3.98986618780085	4.1769327874649	4.36154625654295	4.0961523144475	0.732321162480425	0.0808210531192518	0.308409464427986
Merged-chr14-74917918-4	chr14	74917764	74917964	+	736.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	30013.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	3.41550558577694	3.52917171048074	3.29453769404858	3.56040940215026	3.30293266640841	3.53064637562394	3.40322170354931	3.80916495639791	0.198313916453845	0.70459795440357	0.881307709007534
Merged-chr5-134540181-4	chr5	134540095	134540295	+	848.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 1 of 15)	intron (NM_001039162, intron 1 of 15)	12239.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	4.17286210883414	4.19984525746035	4.60814134168538	3.97294985038754	3.99220338603749	4.09460409829813	4.3691769964344	4.30486847436681	-0.129418517772475	0.764836714536704	0.907852991762133
Merged-chr11-95514695-4	chr11	95514594	95514794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130858)	promoter-TSS (NM_130858)	-129.0	NM_130858	104079.0	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	5.61368945837144	5.41460133472699	4.86678981831927	5.39929537895883	5.25664119059915	5.34302922900316	5.26864024470531	5.26052393033612	-0.133979807263754	0.665827424486882	0.861676528508039
Merged-chr16-84814718-4	chr16	84814606	84814806	+	754.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023844, intron 5 of 9)	intron (NM_023844, intron 5 of 9)	20270.0	NM_001358500	11957.0	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	3.79735979684817	3.99830653209145	3.95318405235115	3.81159325487578	3.86660445303192	3.86153049083592	4.19671872339656	4.08915939690724	0.330119509796818	0.446436937928228	0.732119961404325
Merged-chr13-63108803-3	chr13	63108711	63108911	+	992.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 5 of 15)	intron (NM_001289926, intron 5 of 15)	-131218.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	4.01541284293285	3.70340601222227	4.49638305671353	5.12749012828734	3.18471785866614	3.46913351279024	3.54681298330194	3.55843036805318	-3.04325170971713	1.15778732542943e-06	4.00229082581978e-05
Merged-chr11-117195740-4	chr11	117195629	117195829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3932.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	5.60992412975177	5.82278727268076	5.20365005711413	5.55769076425465	5.41716577648582	5.34706527931684	5.27643629390646	5.39059816554324	-0.366063152467378	0.208542826199623	0.512901300380109
Merged-chr17-71260537-3	chr17	71260429	71260629	+	953.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	B1F|SINE|Alu	50482.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	4.11397419146923	4.28911531374467	4.11464538406897	4.16321928517268	3.41899481372239	3.73209405638873	3.53682067948718	3.41353145984317	-2.0173087652831	4.41159797904507e-05	0.00101359952404922
Merged-chr14-70333779-3	chr14	70333671	70333871	+	785.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144808, intron 1 of 9)	intron (NM_144808, intron 1 of 9)	14662.0	NM_001135152	213053.0	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	3.9768178933191	3.80714929022065	3.68967272703087	3.84138161969242	3.29836759683941	3.36385228517873	3.56393519412478	4.1354206643635	-0.593158938821564	0.276738212298656	0.588754198320412
Merged-chr19-29380745-4	chr19	29380640	29380840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 4 of 6)	intron (NM_021893, intron 4 of 6)	13302.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	5.9926446326315	5.99178246872997	5.88424265472743	5.94177461381962	5.58711414617225	5.83657433519118	5.75993381190499	5.98942121487855	-0.261323354296369	0.296808473879115	0.608763553545456
Merged-chr11-53351737-4	chr11	53351611	53351811	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033565, intron 1 of 20)	intron (NM_033565, intron 1 of 20)	944.0	NM_033565	93736.0	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	5.61472633337747	5.3744835405727	5.61571316484306	5.38709948763576	5.20663433969361	5.13989946253107	5.22384464152774	5.70572036966393	-0.278353967883319	0.356213070587887	0.662704502355483
Merged-chr17-23968004-5	chr17	23967915	23968115	+	811.900024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7215.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	2.99282918849278	2.71102360582152	3.23557430246188	2.63187108244223	3.42841520710563	3.29435918310668	3.04678427367976	3.33965676207868	1.53252047290456	0.0161814983473249	0.110546393210888
Merged-chr6-127330404-4	chr6	127330312	127330512	+	970.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22445.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	5.11340024099066	4.97135205786723	5.29678873644799	5.36815649354176	5.26558145456514	5.03926863277324	5.08933892942166	4.8586221643531	-0.236634976214559	0.457700731635189	0.740761263689429
Merged-chr6-134263583-3	chr6	134263534	134263734	+	807.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 8 of 8)	intron (NM_001303102, intron 8 of 8)	-132695.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	3.69472267779291	4.19074291097304	3.69521950660425	3.7278901744964	4.09289755579939	3.75689132164584	3.62525406474378	3.57825876443155	-0.156382781440864	0.755583547569299	0.903833042021294
Merged-chr8-111854370-4	chr8	111854258	111854458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011801)	promoter-TSS (NM_011801)	-48.0	NM_011801	23837.0	Mm.279437	NM_011801	ENSMUSG00000031954	Cfdp1	AA408409|Bcnt|Bucentaur|Cfdp|cp27	craniofacial development protein 1	protein-coding	8.34043624219624	8.21217070489041	8.02715281114755	8.28550857263441	8.32112668160356	8.16998086889381	8.58766849159142	7.92901063513693	0.0672475012444298	0.723311142542509	0.889557768663126
Merged-chr3-59213764-3	chr3	59213638	59213838	+	895.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	-2856.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	3.62960619672513	4.18924972496601	3.63009889000587	3.40417642818284	3.8880811594646	3.74896451198451	3.50077714706618	3.62810620317707	-0.125210131696442	0.812745572828528	0.927656717651261
Merged-chr16-21778682-3	chr16	21778583	21778783	+	870.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023737, intron 1 of 6)	MLT1J|LTR|ERVL-MaLR	9151.0	NM_023737	74147.0	Mm.28100	NM_023737	ENSMUSG00000022853	Ehhadh	1300002P22Rik|HD|L-PBE|LBFP|LBP|MFP|MFP1|PBFE	enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase	protein-coding	3.5790708756729	3.24132688847691	3.81589078233265	3.53045277954114	3.11043650396077	3.69832297956688	3.27886363641495	3.5774781573378	-0.406307010473061	0.471195065004042	0.749734937523649
Merged-chr2-59203145-4	chr2	59203062	59203262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	42312.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	5.46366426278357	5.4864060558647	5.49198464076431	5.92576218630256	4.99895271626827	5.25957785428881	5.32222694990506	5.40424655886577	-0.674835697385705	0.0272923916690055	0.157426673144906
Merged-chr16-37684888-4	chr16	37684795	37684995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30527.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	5.54527627870626	5.52801446854021	5.00607049736858	5.4709216553537	5.47108156317845	5.46423609121187	5.5182620265168	5.37671488951182	0.0811997165317453	0.779506717467625	0.913990879529571
Merged-chr3-84685842-4	chr3	84685744	84685944	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177260, intron 3 of 6)	intron (NM_177260, intron 3 of 6)	19652.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	5.73960659165643	5.60994182083023	5.51844423102763	5.78582461870508	5.42695373285939	5.28758193784889	5.08341537048031	5.37191600991881	-0.644795445136446	0.0222370118557063	0.137480089192853
Merged-chr11-58938951-4	chr11	58938844	58939044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022423)	promoter-TSS (NM_022423)	-38.0	NM_022423	108660.0	Mm.249986	NM_022423	ENSMUSG00000020496	Rnf187	2410016F01Rik|AB030190|RACO-1	ring finger protein 187	protein-coding	6.22916267470491	6.36226538967362	6.45682219985536	6.62999787121032	6.38187820790489	6.54421672713468	6.7276909838305	6.82321225632421	0.265364016679904	0.252001290435686	0.563336573974489
Merged-chr18-34927715-4	chr18	34927622	34927822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144866, intron 2 of 10)	PB1D7|SINE|Alu	4281.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	6.51695373788498	6.45852307011247	5.65250451872592	6.327768536098	6.15094857400869	6.21776491027751	6.30520154317008	6.16352677502165	-0.115739636490318	0.664420461412037	0.86098920325767
Merged-chr3-145653461-4	chr3	145653371	145653571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3486.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	6.88006630647266	6.62002004992011	6.71022769616299	7.01179371349541	6.61020128241659	6.98940641232654	7.13000590512617	6.90274956953405	0.125775172417542	0.571437775247595	0.810619894194694
Merged-chr17-23983059-4	chr17	23982960	23983160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7830.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	7.50669066274148	7.36440905217555	7.37100285656433	7.74575018237355	7.66210030855021	7.55823918137468	7.79492695666844	7.49348129329158	0.152829365656443	0.419619399135126	0.71270705668077
Merged-chr3-130818878-4	chr3	130818773	130818973	+	987.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88475.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	4.70568283554863	4.88087173966855	4.66545902735421	5.03166535498106	4.98412620858733	4.46761407747197	5.27832641402604	4.62021494212831	0.0849115452054192	0.822452742609302	0.932143478460956
Merged-chr12-95292819-3	chr12	95292715	95292915	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-399411.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	5.03442901923296	5.22172656622559	5.41851511901978	5.53120796942296	4.68638109886174	4.46532864875682	4.14040280043481	4.2147440347395	-1.89495443073571	1.39617747672653e-06	4.73682157368532e-05
Merged-chr10-42277771-4	chr10	42277667	42277867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-1005	-1025.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	8.76716804320787	9.11868218498568	8.76014984165485	8.8400826137881	8.71609833003138	9.01948924913511	9.01177544542544	8.90894173765187	0.04401852630084	0.787792802901024	0.917761402276502
Merged-chr2-166639238-4	chr2	166639147	166639347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 3 of 39)	intron (NM_177782, intron 3 of 39)	74585.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	7.46506661389137	7.55082672796195	7.2376883996994	7.11200319164411	7.34356276990965	7.2889006876036	7.25468185818923	6.83887460669673	-0.197732886683548	0.348452146544229	0.656238106962862
Merged-chr9-31559675-3	chr9	31559582	31559782	+	989.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95444.0	NM_144936	235135.0	Mm.390134	NM_144936	ENSMUSG00000041737	Tmem45b	BC018222	transmembrane protein 45b	protein-coding	4.34591989387679	4.59234047560881	4.47144579772609	4.98958359812937	4.11989959364051	4.1234042033906	4.03747618664085	4.10492425345762	-1.32233736172035	0.00158859375640354	0.0195586244085403
Merged-chr7-131560344-4	chr7	131560241	131560441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009774)	promoter-TSS (NM_009774)	-29.0	NM_009774	12237.0	Mm.927	NM_009774	ENSMUSG00000066979	Bub3	AU019800|AU021329|AU043350|AW146323|C78067	BUB3 mitotic checkpoint protein	protein-coding	7.30853959254452	7.45606088439305	7.3414561592834	7.34411361105671	7.57089595352857	7.60920853448524	7.75484638753898	7.5298452563105	0.338048473663497	0.0487905222608592	0.228312443889665
Merged-chr2-31447705-4	chr2	31447588	31447788	+	930.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22582.0	NM_007494	11898.0	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	4.73662195215991	5.2602850899006	4.5098539731835	4.61578243995774	5.37487678406851	5.33348041191083	4.75610744861261	5.15801966638506	0.711618520727077	0.0558349019106379	0.247371679152528
Merged-chr1-34510813-4	chr1	34510713	34510913	+	903.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12401.0	NM_001360855	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	4.37082517607404	4.35695324291912	4.41162463028035	4.35579862774067	4.1201843862605	3.87953686919295	4.03230035099303	4.48517859208976	-0.550133627046302	0.183586809931186	0.480671137500621
Merged-chr3-108112363-1	chr3	108112263	108112463	+	678.0	f0_balb.idr	intron (NM_010306, intron 6 of 8)	intron (NM_010306, intron 6 of 8)	19297.0	NM_008141	14686.0	Mm.439652	NM_008141	ENSMUSG00000009108	Gnat2	AW490837|Gnat-2|Gt-2|Tcalpha	guanine nucleotide binding protein, alpha transducing 2	protein-coding	3.23056809248	3.06161043967063	3.33360334807473	3.38625200660581	2.92498607383626	3.10622262797732	2.78281718982417	2.86122668734479	-1.4471527791627	0.0197710716469511	0.127080107346788
Merged-chr1-170953405-4	chr1	170953289	170953489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22682.0	NM_010187	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	6.80087189591419	6.48131249407042	6.85553521861925	6.94441342411863	6.50241881112727	6.84894229097505	6.4076191734712	6.65270626997963	-0.258437176868694	0.251369986247266	0.562809104812498
Merged-chr9-124257635-3	chr9	124257550	124257750	+	818.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55044.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	3.42826027193774	3.42744548220049	3.65975234505984	3.96768695953423	3.58115541810287	3.77762617295086	3.59170466783524	3.8977930582054	0.174836945106473	0.736279362357608	0.895944255036988
Merged-chr8-80272094-4	chr8	80271981	80272181	+	982.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-214073.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	5.3097818082288	5.33229454492417	5.88795829704705	5.77588548239907	5.36845936642573	5.12945822311499	5.7316378631152	5.24185607057984	-0.378176316116593	0.236082332005193	0.546101444075659
Merged-chr17-29024600-4	chr17	29024506	29024706	+	844.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8054.0	NM_013663	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	3.60584699821324	4.6915243796171	4.37791755935583	3.98712781100199	4.21571659577579	4.19849413597084	3.90009493842301	4.07000416886534	-0.31087606488908	0.536584751357361	0.790527921862516
Merged-chr17-66216120-4	chr17	66216035	66216235	+	903.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92615.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	4.12710795215592	4.01132537254442	4.35963592953649	5.02639170172172	4.14434742420599	3.90638153784771	4.29690303691651	4.51601475853038	-0.537345454738878	0.275229785484821	0.587001285462458
Merged-chr11-73324649-4	chr11	73324542	73324742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023113)	promoter-TSS (NM_023113)	-5.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	6.89775831283495	6.95998114904643	6.95152179911933	7.02410235665624	7.02842932357357	6.88855401081487	6.90351658049529	7.03354454892141	0.00609368118389163	0.974103148341822	0.990764596550864
Merged-chr15-76199465-4	chr15	76199365	76199565	+	944.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201392)	promoter-TSS (NM_201392)	-59.0	NM_201392	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	4.43026085299157	4.90642541398861	4.68049043435642	4.45038973098326	4.74258675261694	4.73457415369413	4.54067733444101	4.63896784434013	0.0965711686268253	0.790037220676604	0.918782114705335
Merged-chr18-62182125-1	chr18	62182025	62182225	+	941.0	f0_balb.idr	intron (NM_001013754, intron 1 of 1)	intron (NM_001013754, intron 1 of 1)	2025.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	4.93655523532312	4.91042129256602	4.72085882609005	4.29050214390933	5.13445700166128	4.89556089622806	4.69867398789547	4.67787345977226	0.307331262626027	0.418183551286204	0.711693931642136
Merged-chr13-45006055-4	chr13	45005933	45006133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3937.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	7.3258500023503	7.3071306552795	7.24528545973775	7.52976026219146	6.7540912916955	6.82646806097133	6.97827605671254	7.09471087443101	-0.617860864847164	0.0016232316193534	0.0198795601228417
Merged-chr2-102967001-4	chr2	102966901	102967101	+	847.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-65336.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.06861587032411	3.40135705835831	3.54262844534533	3.12062379287214	3.4350909996042	3.3170551903875	3.31444251625042	3.68083047562634	0.540645204449741	0.325600966545955	0.637173865018183
Merged-chr4-44013086-4	chr4	44013001	44013201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080384, intron 2 of 5)	CpG	451.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	6.30200828566119	5.8834464420551	5.82817109994246	5.98906038626035	5.89765465821958	6.21100472856229	5.96195430388178	6.20963351578734	0.0933907214156992	0.712266668075373	0.884804781356341
Merged-chr18-36760235-4	chr18	36760111	36760311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026464)	promoter-TSS (NM_026464)	-11.0	NM_026464	67936.0	Mm.271719	NM_026464	ENSMUSG00000042660	Wdr55	2410080P20Rik|C80692	WD repeat domain 55	protein-coding	6.39148826541817	6.57997838003922	6.07402055368738	6.19607689823512	6.11196214846805	6.66933001444532	6.70894708234084	6.31564046139334	0.213935912612574	0.405463630846904	0.702294527678884
Merged-chr18-4944613-3	chr18	4944509	4944709	+	942.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101980.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	3.84996186844454	3.70448629748976	4.40790913826311	4.27206318219446	3.65592822293647	3.37395133874977	4.31535328232281	3.99994784918301	-0.55073824750917	0.329459969298216	0.640797659708102
Merged-chr14-77081460-2	chr14	77081360	77081560	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310649, intron 3 of 3)	intron (NM_001310649, intron 3 of 3)	44688.0	NM_001310649	108811.0	Mm.102168	NM_175369	ENSMUSG00000034795	Ccdc122	4933415L06Rik	coiled-coil domain containing 122	protein-coding	3.17714653529162	3.11033587961347	3.06053536687205	2.82904221744505	3.18548653634302	3.10723763419045	3.10864734467074	3.11874193660253	0.377781978579326	0.509130440585777	0.773899579952911
Merged-chr16-57431485-3	chr16	57431406	57431606	+	866.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	78229.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	2.85110222949571	2.626122144428	2.68891436915635	2.49697458189173	3.87025265495661	3.48573190362283	3.63027675469657	3.12905332226633	4.03882161191877	5.5842358191383e-09	3.11504954052073e-07
Merged-chr6-115767542-4	chr6	115767444	115767644	+	989.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-5078.0	NM_001168256	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	5.03849065766367	5.27245630377614	4.76384771296548	5.3193327966911	5.27636022243254	5.31547695522344	5.08355450607597	5.37585182420739	0.242370313327407	0.447448965589064	0.732976564773399
Merged-chr19-29367390-4	chr19	29367302	29367502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021893)	promoter-TSS (NM_021893)	-36.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	6.79459231304172	6.58903938948289	6.4110244204228	6.38166446846348	7.02830971308826	6.88637686376134	6.81503425963143	6.77707514428727	0.488240223054102	0.0220030885722206	0.13653193631611
Merged-chr1-4873491-2	chr1	4873391	4873591	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159750, intron 2 of 9)	MTA_Mm|LTR|ERVL-MaLR	15163.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	3.40981787955749	3.23278195327705	3.51429783932954	3.02492036380738	3.12139458667876	3.35077507001741	3.49892291613513	3.40834217652297	0.18251929780618	0.744023364608497	0.899197603682721
Merged-chr12-3359532-4	chr12	3359442	3359642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5590.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	6.28230292965253	6.65554624323689	5.73541680358803	5.53701471982089	6.49688657001023	6.30834340735113	5.8836985358133	5.67548260269429	0.0154314371537525	0.964551680500162	0.987427356052366
Merged-chr15-103510442-4	chr15	103510326	103510526	+	859.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357980, intron 1 of 14)	intron (NM_001357980, intron 1 of 14)	3300.0	NM_001357980	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	4.29528115509139	4.11874789003	4.45877923360495	4.34811759095306	4.60775339119063	4.01417322631166	3.98894370470714	4.29325631746318	-0.105482200692678	0.80590975994617	0.925317663285668
Merged-chr1-184626599-3	chr1	184626503	184626703	+	883.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-68912.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	4.43922739615259	3.83934009961187	4.2790533714308	5.00158553259373	3.87548603401952	3.88339588477977	4.02742686128428	3.98989606204159	-1.33483492382647	0.00690445306118102	0.0602860726744117
Merged-chr10-80136998-3	chr10	80136906	80137106	+	808.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036582, intron 3 of 10)	intron (NR_036582, intron 3 of 10)	381.0	NM_001195268	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	3.81138215662453	3.51380403204228	3.70640813533375	3.12832700099422	3.61928692322086	4.25366770685486	3.93739438786049	3.90713115629501	1.1513837146277	0.0287506412448321	0.162920300387382
Merged-chr14-121372019-4	chr14	121371909	121372109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	7221.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	5.87369250218351	5.59644173405573	5.96202238673167	6.29182014374145	5.21104667776618	5.77553843518378	5.95219430432368	5.67560732111282	-0.482547842665629	0.118722809998049	0.38118863696383
Merged-chr2-91183989-4	chr2	91183895	91184095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145527)	promoter-TSS (NM_145527)	-948.0	NM_145527	228355.0	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	7.21627659406593	7.23999151581536	7.23934066382277	7.43209596422605	7.40381246201369	6.9519634335155	7.17039508156238	7.16769228662213	-0.13464287573675	0.490668092284165	0.76237724871089
Merged-chr9-107724392-4	chr9	107724296	107724496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13921.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	6.02929225116334	5.6002585328699	5.78030774410727	6.06584252386886	6.14505466929846	5.74045832913134	6.11676985432973	5.82547226579016	0.135414433856213	0.614066316415231	0.833609107549057
Merged-chr1-152677277-4	chr1	152677174	152677374	+	972.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-52057.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.09666880601122	4.70651045814188	5.16151341650538	5.21414113439397	5.30429957334437	5.20429428547113	5.16664867123731	4.88050419081277	0.164558006692931	0.614780552179589	0.834117359681121
Merged-chr14-17903247-4	chr14	17903150	17903350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-78394.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	5.45586786943261	5.28526543458755	6.06995529089572	6.41009558142912	5.42612731880781	5.44252415963477	5.81569802978152	5.42235561452893	-0.602561230892413	0.0874510256621859	0.322502726855605
Merged-chr19-28657292-1	chr19	28657192	28657392	+	817.5	f0_balb.idr	intron (NM_175459, intron 2 of 10)	intron (NM_175459, intron 2 of 10)	-20932.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	3.52001076378583	3.67940248024238	3.62275682659566	3.83787948110299	3.15288708110785	3.40100491401052	3.33817275024296	3.22140573924888	-1.43739235096816	0.0072160768124898	0.0622805856048685
Merged-chr7-99090091-3	chr7	99089965	99090165	+	863.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 4 of 14)	intron (NM_178635, intron 4 of 14)	51079.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	3.51918245006176	3.08462451567903	3.31019253996168	3.28920448616231	2.83243983895666	3.02739719267215	3.40460138138952	3.61041441117694	-0.189638490661526	0.763664179518354	0.90733001599047
Merged-chr7-49762846-4	chr7	49762722	49762922	+	824.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146053, intron 3 of 5)	intron (NM_001146053, intron 3 of 5)	3310.0	NM_001146052	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	4.50239578921139	4.30348198316231	4.42870192686207	4.38384493725296	3.93763706123183	4.09608714394192	3.90131354157689	4.17201874830437	-0.965743617378815	0.0175556488675544	0.117161623172463
Merged-chr2-30408570-3	chr2	30408462	30408662	+	910.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007760, intron 4 of 13)	intron (NM_007760, intron 4 of 13)	7186.0	NM_007760	12908.0	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	3.57738781312928	3.71193366285857	3.39977092088511	3.37188275673193	3.71880658930832	3.69518761661417	3.81216761271193	3.73235800492758	0.707950126017637	0.137143701623966	0.411824241716235
Merged-chr6-71235337-4	chr6	71235222	71235422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009762, intron 4 of 8)	intron (NM_009762, intron 4 of 8)	26959.0	NM_001160127	12180.0	Mm.234274	NM_009762	ENSMUSG00000055027	Smyd1	4632404M21Rik|Bop|C78565|Zmynd18	SET and MYND domain containing 1	protein-coding	5.24192995628059	4.84750650657115	5.52297632489516	5.88052362523281	5.22280206580775	4.69649173139976	5.08587986613762	5.56821728212083	-0.463680295138446	0.233048686352194	0.542611378295208
Merged-chr16-9133007-4	chr16	9132945	9133145	+	753.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41C|LTR|ERV1	302945.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	3.38494510853392	3.57359242775305	3.61724168784182	3.46261919992855	3.65319461009717	3.78750541060972	3.65406943646082	3.71708897601516	0.608029354788609	0.196537609371824	0.49766951412921
Merged-chr2-23097201-4	chr2	23097099	23097299	+	773.354187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355638, intron 10 of 13)	MTEb|LTR|ERVL-MaLR	28127.0	NM_001355638	74159.0	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	3.56452200113661	3.84913880251025	3.74952055185073	4.08847022591838	3.9762110993659	4.08472029092983	3.99231815381132	4.37232573796764	0.71881968603206	0.127603720186088	0.39745918674923
Merged-chr9-111037597-4	chr9	111037495	111037695	+	861.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008522, intron 14 of 16)	intron (NM_008522, intron 14 of 16)	18303.0	NM_008522	17002.0	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	3.95889891206028	4.19525361213832	3.86667668201629	3.19464588783757	3.98470213215994	3.52932025855355	3.75065158735569	3.47543204550946	-0.437052946068729	0.445107033506334	0.731219385569316
Merged-chr6-51532815-4	chr6	51532730	51532930	+	939.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361581, intron 1 of 6)	intron (NM_001361581, intron 1 of 6)	8570.0	NM_001361580	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	4.56202086819895	5.09875066785483	4.10366383889952	4.18630047016496	4.54630680117715	4.52908258383142	4.19121695686956	4.25636538123207	-0.354952180372398	0.435916218718519	0.724887406134133
Merged-chr15-68058827-4	chr15	68058714	68058914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	200042.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	5.88183549514561	5.68889631586873	6.47119889975006	6.60246397171882	5.93561623599855	5.29220333521037	5.85271607890203	5.70309485563179	-0.793284324273513	0.014701043434471	0.103348698333058
Merged-chr13-67061087-4	chr13	67061003	67061203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166218)	promoter-TSS (NM_001166218)	67.0	NM_001166218	78251.0	Mm.297247	NM_001166218	ENSMUSG00000090641	Zfp712	4921504N20Rik|mszf31|mszf89	zinc finger protein 712	protein-coding	7.40042450558718	7.36225601463218	7.75800229974614	7.69994814708921	7.43285041868261	7.4634792451206	7.54223065921053	7.538909729717	-0.104291330849031	0.573723933094449	0.811967547495324
Merged-chr8-35708022-4	chr8	35707921	35708121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	118538.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	6.00192003662583	5.96720485808593	6.04692299753641	6.00075549997769	6.13646034989367	6.13415761918509	6.46261537809807	6.22321156618787	0.369939563503304	0.110445561531203	0.366978089078026
Merged-chr9-37255325-2	chr9	37255225	37255425	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_020258, exon 1 of 18)	exon (NM_020258, exon 1 of 18)	413.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	5.46131851734772	5.58521819206107	6.02326365797184	5.84478604042605	5.4626030672782	5.60908861059713	5.40546390037845	5.45845284424675	-0.454995761220631	0.105439985389912	0.357405152887106
Merged-chr3-96692778-4	chr3	96692734	96692934	+	876.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3541.0	NM_146135	229615.0	Mm.1635	NM_018812	ENSMUSG00000028101	Pias3	Pias3l	protein inhibitor of activated STAT 3	protein-coding	3.72551590146748	3.57707500711805	3.28126716115113	3.59778216134215	3.5054873766512	3.52144337157557	3.56234132812734	3.62635370137349	-0.0158256484654269	0.974568334235217	0.990926408960312
Merged-chr11-21377742-3	chr11	21377653	21377853	+	771.844421	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-6486.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	3.46120259522048	3.40801598517591	3.59473448360041	3.15352987664687	4.21720047901041	4.55551386543547	4.13842822205121	4.15602212250147	2.61329897475303	2.80597280675043e-08	1.35960747727494e-06
Merged-chr10-14179440-4	chr10	14179323	14179523	+	900.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	213044.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.58904931009283	4.54378554795174	5.17489797841134	5.31769796907686	4.4073666636876	5.16884213466906	4.43245775587964	4.54256664388144	-0.589567063543939	0.167194852817253	0.458709621826983
Merged-chr6-129095402-4	chr6	129095299	129095499	+	617.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153506, intron 2 of 4)	intron (NM_153506, intron 2 of 4)	5504.0	NM_153506	232409.0	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	3.66834385253348	4.12582864730914	4.24463031634448	3.72302426778611	3.79957666348581	3.90526217156357	4.01723661954076	3.93823052616651	-0.114124825010076	0.806543124271228	0.925439675100154
Merged-chr1-60937506-4	chr1	60937406	60937606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1d|LTR|Gypsy	28481.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	5.64485579237164	5.82890551364134	5.43843066797467	6.01066951509374	5.89415960001742	5.68011335119377	6.10681737598085	6.11530526734102	0.30871339534443	0.26838962958002	0.580107684368438
Merged-chr9-61860423-2	chr9	61860323	61860523	+	748.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54087.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	2.56584614628822	2.89641307116899	2.71007112263111	2.6152565392757	2.8245242965455	2.94868456717106	3.00084277442288	2.89905294830833	1.00143543681458	0.110258737521877	0.366691625977182
Merged-chr13-102886378-4	chr13	102886261	102886461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	126106.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	6.28287096367086	6.28358653259708	5.89382430545503	6.62908100797516	6.37299092227054	6.19245947151383	6.09385883008204	6.46938351518459	-0.0373088651270073	0.886340020627233	0.957326843723552
Merged-chr13-46134818-3	chr13	46134721	46134921	+	976.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138900.0	NM_001005422	380842.0	Mm.188108	NM_001005422	ENSMUSG00000063529	Stmnd1	Gm1574	stathmin domain containing 1	protein-coding	4.03039953277437	4.64713262404742	4.15527535230224	4.16926798255851	3.17875452295675	3.17800208860062	3.13171219728463	3.13932179827472	-4.51908015579182	1.46306812342058e-08	7.51911378750565e-07
Merged-chr5-117891766-4	chr5	117891691	117891891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 2 of 27)	intron (NM_008712, intron 2 of 27)	24952.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	6.68364693997624	6.60507525740736	7.0654499440889	6.73229371344202	6.41514967631008	6.26965987332158	5.98854270536414	6.19564111050065	-0.798911990645382	0.000687260178586548	0.00997576387225683
Merged-chr17-5561408-3	chr17	5561312	5561512	+	598.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	68812.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	3.09636986971973	3.35562109855067	3.15577123056002	3.29130289453771	3.0314545054988	3.14332729288436	3.02496686984398	2.96874053546051	-0.773981064039062	0.175820372679932	0.470658653309832
Merged-chr13-76055408-4	chr13	76055308	76055508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175495, exon 1 of 1)	3' UTR (NM_175495, exon 1 of 1)	1588.0	NM_175495	238725.0	Mm.167172	NM_175495	ENSMUSG00000045509	Gpr150	C030001A19Rik|PGR11	G protein-coupled receptor 150	protein-coding	5.32157827083039	5.4346242267221	5.41415359938725	5.95759752274335	5.55117216616373	5.29666940627438	5.65031461373781	5.35007811799795	-0.187284810557839	0.548514483247124	0.797489887105971
Merged-chr2-119740746-4	chr2	119740607	119740807	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1630.0	NM_146125	228550.0	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding	5.13256937310353	4.69712741459325	4.53489079339966	4.32279893223448	4.89960110746851	4.57470973947661	4.96011453659291	4.88303570085128	0.308256972296178	0.421851301901705	0.714268351482731
Merged-chr1-59670245-4	chr1	59670130	59670330	+	979.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009460, intron 1 of 4)	intron (NM_009460, intron 1 of 4)	604.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	4.45052861366029	4.8503357880929	4.86171406683604	4.23335372917645	5.24282523714944	4.92611566385405	4.69046549152057	4.89304736546554	0.719275883230245	0.0592210843888893	0.256436158031193
Merged-chr7-68130104-4	chr7	68130001	68130201	+	975.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	134132.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	5.63895894463877	5.75277904639233	4.96731758475812	5.79259459780053	5.24902060072314	5.4441136851347	5.63579396906742	5.66058279501549	-0.149761088140185	0.641681347835596	0.848854850593973
Merged-chr19-5952567-2	chr19	5952467	5952667	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 7 of 17)	intron (NM_001164057, intron 7 of 17)	11639.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	3.70318594295311	4.19564752218355	4.18001063778558	3.75420517500873	4.02765857592967	3.8231222963321	3.63161342699449	3.81193711251391	-0.376671347450132	0.433068703362165	0.722758873865112
Merged-chr19-56689372-4	chr19	56689275	56689475	+	959.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32997.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	4.11288920812283	4.27676555843714	4.01638241370845	4.16684692088474	4.38571946335627	3.97728938077715	4.34639138039593	3.67149009691209	-0.0289787630904572	0.949326344065085	0.981824387838494
Merged-chr8-71273234-4	chr8	71273151	71273351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163042)	promoter-TSS (NM_001163042)	537.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	5.65776105084072	5.72315315816549	6.17865260488765	5.96344404883416	5.86084057411673	5.75307180084669	5.42879465672583	5.87549700957475	-0.249039374045027	0.367252171054223	0.671667881586592
Merged-chr6-136939609-3	chr6	136939501	136939701	+	843.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301303)	promoter-TSS (NM_001301303)	-74.0	NM_001301303	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	3.62577637320533	3.82389487320385	3.87340081272229	3.47109197251824	4.52606190400446	4.39359911896816	4.36226497380843	4.49058835157324	2.01464713590802	1.55816845610398e-06	5.24109583626506e-05
Merged-chr7-27179020-4	chr7	27178892	27179092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029391)	promoter-TSS (NM_029391)	-109.0	NM_029391	19342.0	Mm.482114	NM_029391	ENSMUSG00000053291	Rab4b	1500031G17Rik	RAB4B, member RAS oncogene family	protein-coding	8.83506250009961	8.98057664240532	8.8403806620344	8.81659028148904	8.74632556374365	8.9493751361679	9.07447366368435	8.69345207177383	0.00483717824981638	0.975460455079956	0.991324270933399
Merged-chr12-85340182-4	chr12	85340111	85340311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145138)	promoter-TSS (NM_145138)	-849.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	6.35548026705598	5.9707233193658	6.02508537012904	6.19585629673903	6.34979348800814	6.1100016977207	6.27182233030255	6.16789318286632	0.134027937395474	0.568256661363642	0.808586868024762
Merged-chr6-83125116-4	chr6	83124970	83125170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023547)	promoter-TSS (NM_023547)	-41.0	NM_023547	70020.0	Mm.27814	NM_023547	ENSMUSG00000030034	Ino80b	2510009I23Rik|HMG1YL4|Hmga1l4|Papa1|Znhit4	INO80 complex subunit B	protein-coding	5.18869334054886	5.19961849565006	4.92457648684123	4.66876121346115	5.04417488535375	5.17049635863351	4.70441755049733	5.30001026502557	0.137751861227232	0.693195297283813	0.87525985118688
Merged-chr2-165043189-4	chr2	165043101	165043301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8422.0	NM_144892	228869.0	Mm.233080	NM_144892	ENSMUSG00000039804	Ncoa5	CIA	nuclear receptor coactivator 5	protein-coding	5.29252904347224	5.80548407421171	5.39692849113804	5.4829713527638	6.46307671248937	6.08629550577283	6.00691962836392	6.07333142607601	1.07152404960929	8.70165135359948e-05	0.0018052312494837
Merged-chr3-148336319-4	chr3	148336215	148336415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	618320.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	5.22316483215846	5.1560813373396	5.79348950055978	5.7475139928407	5.13504546504267	5.22821323420384	5.26168770701259	5.28420148377461	-0.533208311880222	0.093080154756885	0.333754084703054
Merged-chr2-102885532-4	chr2	102885442	102885642	+	834.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	16123.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.37808739402262	4.51708441431543	4.58443076186075	4.80841025465145	4.42606584737154	4.3133397973964	4.48544337389265	4.28371311045315	-0.492830502470149	0.193469924962972	0.493690248402503
Merged-chr12-73287804-4	chr12	73287705	73287905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 1 of 15)	intron (NM_001037717, intron 1 of 15)	957.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	6.69863243127962	6.54294485717076	6.55942645846881	6.76835841207677	6.73378966794437	6.88975926070111	6.7090568436014	6.52145497540331	0.0932975967770682	0.655811526980251	0.856309663363368
Merged-chr14-54894478-1	chr14	54894378	54894578	+	1000.0	f0_balb.idr	exon (NM_019402, exon 1 of 7)	exon (NM_019402, exon 1 of 7)	335.0	NM_019402	54196.0	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	5.28665562234367	5.1271607988074	5.58353458421493	5.19152826779443	5.29380817495387	5.3680900490216	5.13488475970814	5.31385069641242	-0.0318277541505305	0.91494125140508	0.968366789593799
Merged-chr11-4422268-1	chr11	4422168	4422368	+	784.0	f0_balb.idr	intron (NM_029458, intron 5 of 10)	intron (NM_029458, intron 5 of 10)	18814.0	NM_029458	75828.0	Mm.159592	NM_029458	ENSMUSG00000020419	Hormad2	4930529M09Rik	HORMA domain containing 2	protein-coding	4.01250198863286	4.27442554866241	3.80835354595253	3.87135141228445	3.56715352929192	4.08841254241994	3.94789911088913	4.14513150826418	-0.145837712599896	0.757114003042816	0.904554066545557
Merged-chr18-12141482-4	chr18	12141379	12141579	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024182, intron 6 of 12)	intron (NM_024182, intron 6 of 12)	12629.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	5.33237739238069	4.94546392015071	5.36192746686162	5.37090166318532	5.14592568121188	5.18227664880362	5.4931960784474	5.23966728586013	0.000731639757628625	0.998090334409796	0.99910121404386
Merged-chr2-75702019-4	chr2	75701920	75702120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	2643.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	5.71866833874976	6.06426061718583	5.87361537353758	5.72916847994555	5.94805758776814	6.18661199014621	6.4132657331559	6.27849026622288	0.565360983818096	0.0254113102413924	0.15019428892487
Merged-chr1-163899809-4	chr1	163899700	163899900	+	926.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305643, intron 19 of 19)	intron (NM_001305643, intron 19 of 19)	-29300.0	NM_001286002	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	4.39694485715993	5.064048747765	4.79332615028552	5.29108408301571	5.09491940441701	4.58024027766459	4.91271473157903	4.62897050512962	-0.229072474144867	0.565770512150943	0.807745893862163
Merged-chr10-80570916-6	chr10	80570679	80570879	+	943.086121	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_078477, intron 1 of 1)	intron (NM_078477, intron 1 of 1)	6517.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	2.51392389785372	2.67845441555574	2.58564942715827	2.28839582404508	2.74309386852451	2.88955182109986	2.76869810053113	2.77818284137653	1.4368443175207	0.034890377248541	0.184896436484
Merged-chr4-88407020-4	chr4	88406933	88407133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 41 of 43)	intron (NM_001081184, intron 41 of 43)	31893.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	7.01563704293917	6.77806291982486	6.94263360946947	7.06119098542256	6.75256311790253	6.71837831312147	7.17917843057694	6.65354624624317	-0.16144139373662	0.45544426790275	0.738955495643786
Merged-chr19-33391991-8	chr19	33391897	33392097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001167818, exon 1 of 7)	5' UTR (NM_001167818, exon 1 of 7)	298.0	NM_001167818	67795.0	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding	6.13878376590802	6.23011726168926	6.34733290264244	6.22321727742011	5.97391000876825	6.25321811948207	5.97981257633091	6.47452730681887	-0.0862221951426328	0.722406125646126	0.889150263279452
Merged-chr1-85987427-4	chr1	85987324	85987524	+	968.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-26369.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	5.15094803039049	5.07258579122128	4.96021585598336	4.98527691672515	6.06218413242572	5.67004419042577	5.81980350244883	5.66916092371458	1.37164264181649	9.73445157517724e-07	3.41998286608855e-05
Merged-chr4-59832973-2	chr4	59832859	59833059	+	597.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	27309.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	3.03475168773462	3.0855173754647	3.15187248202244	3.28259325572203	2.74451115467005	3.20535313945395	3.02436088740249	2.90564163138509	-0.726400729776632	0.235491136493703	0.545490589918757
Merged-chr2-173740120-3	chr2	173740022	173740222	+	918.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 1 of 5)	intron (NM_019806, intron 1 of 5)	2551.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	3.62629808190463	3.30169385241779	3.42315675586801	3.48711433510011	3.38468938086564	3.42020191537639	3.29614731488689	3.3649977603854	-0.337468633515398	0.510594851849146	0.774867939359323
Merged-chr13-112440097-4	chr13	112440024	112440224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23946.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	6.71310287537061	6.42255204701113	6.79494234557419	6.957678871447	6.15384416072434	6.30087856917011	6.27532372833048	6.02567195690015	-0.819046228593405	0.000462414003153308	0.00724184077677653
Merged-chr11-23699902-4	chr11	23699799	23699999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 4 of 17)	intron (NM_001033654, intron 4 of 17)	33923.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	5.51291405248214	5.75774098358437	5.59724519531359	5.85262607686071	5.78540581478561	5.13355531939433	5.8112729940188	5.81458745767309	-0.0408901076241644	0.88938865717151	0.958519732455951
Merged-chr8-73293863-4	chr8	73293757	73293957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	MTD|LTR|ERVL-MaLR	59683.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	5.77098507939522	5.98380631840394	5.84281790463925	5.44305963298767	6.0854009012193	5.76634557420251	5.74266929968639	5.52831970388467	0.0754366455650306	0.793019085007482	0.919815298967646
Merged-chr12-3305457-2	chr12	3305357	3305557	+	997.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	B2_Mm2|SINE|B2	4512.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	3.29641773715982	3.4990824914279	3.23616478178492	2.85419029943704	3.43625189279102	3.47086247499632	3.59466368911677	3.17108332091375	0.675074617913859	0.246574958326172	0.557810798331382
Merged-chr3-98042513-4	chr3	98042406	98042606	+	751.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	28968.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	4.13659034014165	3.88306393648054	4.18353383754696	3.9810969010203	4.31368685899672	4.59793722960472	4.02236948594617	4.13468791439621	0.604826222592545	0.149374520606911	0.431576920047058
Merged-chr19-21276627-3	chr19	21276571	21276771	+	869.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009551, intron 2 of 5)	intron (NM_009551, intron 2 of 5)	4393.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	3.01999986139733	3.02351349455378	3.39276890125625	2.90712261569442	2.92342647132455	2.99963261781168	2.88177375941797	3.13663335023238	-0.43208368520908	0.476625804096691	0.753093932967774
Merged-chr2-79253503-4	chr2	79253406	79253606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1920.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	5.61917942995191	5.96540855218929	5.77777736936326	5.77241952620823	5.88545803371015	6.19722513144101	5.95197934579207	5.58797172113305	0.207576952785833	0.434657313617955	0.723891809743297
Merged-chr10-49074947-3	chr10	49074823	49075023	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	713014.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	4.86100697285282	4.72205579303263	4.95403913492005	4.92515866451168	3.8621625849105	4.39243600063223	4.38605757920641	4.09775846726961	-1.58973771092569	6.86663355074636e-05	0.00147750939996546
Merged-chr5-148928810-4	chr5	148928720	148928920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153572)	promoter-TSS (NM_153572)	-173.0	NM_153572	231912.0	Mm.397405	NM_153572	ENSMUSG00000041298	Katnal1	-	katanin p60 subunit A-like 1	protein-coding	6.74797347318081	6.92268168743246	7.80506689908004	6.79185627837448	6.87121766760591	7.35085248935411	7.47895907767582	7.22361609055083	0.142471949444522	0.616196948698557	0.834845587136962
Merged-chr2-38221180-2	chr2	38221080	38221280	+	935.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 2 of 21)	intron (NM_146122, intron 2 of 21)	66204.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	3.16263021457766	3.11160222454123	3.57854249979434	3.02099626131815	3.39185987647744	3.0745426545584	3.26740781630964	3.16144435917444	0.0220524333151268	0.969763832283025	0.989095984799937
Merged-chr9-21166942-4	chr9	21166851	21167051	+	862.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	intron (NM_183408, intron 1 of 14)	1237.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	3.27090799709476	3.04831654939033	3.15290310550295	3.22694507862939	3.53291277125064	2.82783595028913	2.8717521298437	3.73644321715516	0.453420836636779	0.510839026726786	0.775007163360528
Merged-chr1-14590952-2	chr1	14590852	14591052	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	165014.0	NM_001360810	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	3.36871723977528	3.23417108425179	3.09567571394539	3.03513491893628	3.27377877528976	3.14269709007603	3.08472548169926	2.82525920133189	-0.341815683954457	0.567554684041118	0.808307057069209
Merged-chr15-34453197-3	chr15	34453105	34453305	+	798.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173421)	promoter-TSS (NM_173421)	-107.0	NM_173421	239368.0	Mm.211977	NM_173421	ENSMUSG00000044726	Erich5	-	glutamate rich 5	protein-coding	3.73036607003762	3.22736828921019	3.29074479608126	3.55890888156089	3.11800921210625	3.07053164572661	3.09296972005841	3.40072777863946	-1.08038559868584	0.061850111877606	0.263130064750231
Merged-chr6-72389697-4	chr6	72389605	72389805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016794, intron 1 of 2)	intron (NM_016794, intron 1 of 2)	962.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	5.89684045138509	5.9619191252014	5.75004346573983	6.23709347596875	5.98880676104145	5.63931618603925	6.22708240700841	6.02592973633358	-0.0031858475219008	0.99057355618839	0.996298363090765
Merged-chr6-129255179-4	chr6	129255070	129255270	+	887.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16688.0	NR_040268	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	4.19687489521686	4.02759830506526	3.81793604209155	4.09740298183516	4.68399532160959	4.54439098339475	4.13158343792935	4.5252802499318	1.07469967318151	0.00906456306008041	0.0734775690756706
Merged-chr11-59545245-4	chr11	59545096	59545296	+	690.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 2 of 9)	B3|SINE|B2	2510.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	3.67730176962254	3.09687622285929	2.91066017960431	3.28193109018784	3.56047965103531	3.54934829925268	3.24819895804979	3.48382973412423	0.66973378379263	0.263750496065782	0.575838800057245
Merged-chr2-122161702-3	chr2	122161579	122161779	+	704.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080510, intron 1 of 6)	intron (NM_080510, intron 1 of 6)	979.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	2.95834665626303	2.74230464217027	2.88684956272006	2.75680672517982	3.57606319688972	3.49516612510813	3.41106160342942	3.21162454784211	2.42766861227546	2.91690477964867e-05	0.00070868793641385
Merged-chr15-59719567-4	chr15	59719464	59719664	+	854.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70910.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	4.3403109321103	3.99880849587396	4.38124201394299	4.09225003370176	4.14129039821392	4.08717288151117	4.50830434849253	4.06616681973929	0.0250317930561185	0.952346740170333	0.983110341498473
Merged-chr1-60899362-3	chr1	60899229	60899429	+	975.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9696.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	3.15291014673842	3.27072725037469	3.52413237723362	2.86230115606551	4.17330912318331	3.83808164250941	4.63024819749948	4.47365283868039	3.51889051101354	2.15818128544074e-10	1.57233557539802e-08
Merged-chr13-60670793-4	chr13	60670706	60670906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	68595.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	7.54834677190749	7.6219353292904	7.12679446236184	7.7438474925741	7.58428546044024	7.75338774008134	7.49444083910464	7.49877154658128	0.0587373771794104	0.769265512870527	0.909742530773464
Merged-chr5-65973394-4	chr5	65973303	65973503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081104, intron 4 of 4)	LTR84a|LTR|ERVL	6279.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	7.12020495445237	7.38820861779874	7.08568991470236	7.09952419997705	7.22859177845423	7.51321082567573	6.84082942383779	7.06856418148161	0.00870261275313939	0.967715745711477	0.98857340124644
Merged-chr4-115903051-3	chr4	115902954	115903154	+	715.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12388.0	NM_001357060	76237.0	Mm.101606	NM_001357060	ENSMUSG00000034185	6430628N08Rik	-	RIKEN cDNA 6430628N08 gene	protein-coding	3.33847415409519	3.52891458909814	3.20576663121918	3.54191791152256	3.71071542116734	3.74042076734148	3.75052610927566	3.51471760848704	0.82986225913343	0.102597472540313	0.351887561707134
Merged-chr4-33244608-2	chr4	33244508	33244708	+	996.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033225)	TTS (NM_001033225)	4179.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	3.57104625053958	3.43327516458892	3.67100610348951	3.20614217497834	3.3258628121142	3.68969887274046	3.33421299117398	3.51677668524251	0.00033497069689958	0.999496554726592	0.999758432962781
Merged-chr17-57339754-4	chr17	57339638	57339838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18948.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	5.09783010633233	4.95860622788955	5.16453205250444	4.82744082546774	5.5828572106504	5.45914096138271	5.10685756813924	5.09521074895118	0.62374483200951	0.0493566474015493	0.229851104853707
Merged-chr7-137420690-4	chr7	137420543	137420743	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-9887.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	3.61442920821098	3.3347698932929	3.50509623525556	3.92168894584189	3.7015603753071	3.433497330358	3.60051830032651	3.71386807907196	-0.0264566374528828	0.959684444486563	0.985577328689046
Merged-chr10-69307216-6	chr10	69307082	69307282	+	882.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45730.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	3.33150002204276	3.50608450956926	3.44851969422924	3.24585095361988	3.845132511475	3.6194713318564	3.19400798943778	3.3897369466958	0.5406930581294	0.317170613758392	0.629008590755612
Merged-chr7-44246655-4	chr7	44246541	44246741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025880)	promoter-TSS (NM_025880)	-81.0	NM_025880	668661.0	Mm.274492	NM_025880	ENSMUSG00000045411	2410002F23Rik	-	RIKEN cDNA 2410002F23 gene	protein-coding	6.17788017925508	6.80237100125521	6.60994011179275	6.37073283957217	6.40673795108377	6.67465203417817	6.6207569369515	6.27717488531907	-0.0124740850562397	0.959079190832856	0.985377888348831
Merged-chr18-84952095-4	chr18	84952000	84952200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025969)	promoter-TSS (NM_025969)	-576.0	NM_025969	67105.0	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	6.31608464417641	6.47306071532102	6.29707985990592	6.51749468253825	6.97841577423146	6.98343034291091	6.7996542192733	6.91898920795079	0.723224580006368	0.000419188319677534	0.0066795176642774
Merged-chr5-90789770-4	chr5	90789601	90789801	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3600.0	NM_203320	330122.0	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	4.4537956945504	4.40377244424573	4.45451034068536	4.54378964458621	3.76335217748816	4.35976746865385	4.47373543725908	4.64117302420789	-0.292717434408871	0.499871879888605	0.768524538060588
Merged-chr11-120467605-4	chr11	120467501	120467701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008244)	promoter-TSS (NM_008244)	-1.0	NM_197995	70317.0	Mm.485046	NM_197995	ENSMUSG00000057594	Arl16	2600005N12Rik	ADP-ribosylation factor-like 16	protein-coding	8.22502505465776	8.21487606748036	7.9593746466802	7.96894233343141	8.12944057098625	8.27725745480565	7.99664396635023	7.9398489210698	-0.00323145225691621	0.98502975736586	0.994530888374935
Merged-chr9-111059264-4	chr9	111059213	111059413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-1795.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	8.75594950561065	8.82806565237942	8.95563052519155	8.62310418004927	8.7678751637566	8.74331215511748	8.68419890622022	8.53080150872513	-0.131724570171508	0.398856751093906	0.696949176043037
Merged-chr17-71250881-4	chr17	71250782	71250982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46228.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	6.47810639246764	7.17845839501514	7.2195232630531	7.14324625120585	6.08632696427605	6.32383809333621	6.19835773026476	6.09268486344834	-1.2607778751521	2.70584878691818e-07	1.06115488046308e-05
Merged-chr12-35885356-4	chr12	35885240	35885440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40281.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	6.03905653457304	5.81267330060898	6.20004711852821	6.38776769900066	5.52999552532489	6.31719417963511	6.05087350308136	6.03580203536667	-0.21079305545526	0.463837694841797	0.74503550302713
Merged-chr6-136471036-3	chr6	136470876	136471076	+	736.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-47875.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	3.06937518256804	3.44760029228254	3.18773973675736	2.81684533011395	3.16577003041835	3.11696518919224	2.86231828979462	3.12842697483158	-0.281987884629342	0.649892665678135	0.852993860528184
Merged-chr5-62616109-3	chr5	62616011	62616211	+	936.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 28 of 32)	intron (NM_178407, intron 28 of 32)	150066.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	3.59615193757164	3.62416286794036	3.17674970191789	3.71015172519144	2.86621378682437	2.93477185286442	2.96797934842202	3.04526144235581	-2.55577170668177	9.6705653572466e-05	0.00197458741125489
Merged-chr12-100110209-4	chr12	100110115	100110315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2116.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	6.12761295016573	6.31433837104943	6.12869426343905	6.30414727989207	6.30318556123398	6.61940527421107	6.17879511593267	6.31964326065009	0.195628841460024	0.396534791491164	0.695232666055094
Merged-chr15-76198800-4	chr15	76198715	76198915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201393)	promoter-TSS (NM_201393)	591.0	NM_201392	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	6.42715807106719	6.80182588433427	6.16941364756449	5.88585478573758	6.2249357995861	6.49955060229051	6.03139628278897	6.24447914353627	-0.150288345678041	0.596865883924781	0.824985875654518
Merged-chr18-68145817-3	chr18	68145749	68145949	+	938.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-82097.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	4.07193987300275	3.93884255338521	3.79029902677499	4.21286156262596	3.63938993880494	3.67762469059222	3.77511351386091	3.73452402624257	-0.934824357638873	0.042727030172914	0.210104820772217
Merged-chr5-66145323-1	chr5	66145223	66145423	+	653.0	f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	5655.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	2.54676682400716	2.61591026523586	2.46657637287649	2.48574346676066	3.16427041042515	3.17676034006503	2.88005893568398	3.00593815695838	2.56889585789269	0.000117664245151373	0.00232194991188578
Merged-chr15-6562522-4	chr15	6562406	6562606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17341.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	7.43576868183998	7.50075037868764	7.57003407236405	7.56615874975824	7.25387202739409	7.08805870605826	6.87476171123303	7.02682627404367	-0.601346353773659	0.00127061238486503	0.0162985977549663
Merged-chr1-166003437-4	chr1	166003338	166003538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011137)	promoter-TSS (NM_011137)	-804.0	NM_198932	18986.0	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	7.25161033097273	7.00627610141921	6.95108502390289	7.26325373519665	7.33329751089846	7.42975339651229	7.61569038770516	7.05078716019253	0.325226827497715	0.115662673738422	0.376329506906353
Merged-chr14-47276958-4	chr14	47276868	47277068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172598)	promoter-TSS (NM_172598)	-111.0	NM_172598	218973.0	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	7.18210684960694	7.4532962257605	7.40738107091935	7.22500593331687	7.4651870415234	7.61326720734493	7.33107053276539	7.47801631303126	0.208672234029672	0.251511293117267	0.56287087730158
Merged-chr3-21955866-4	chr3	21955776	21955976	+	996.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120776.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.31890659126333	4.92855427793063	5.3198230938512	5.71996631329462	5.02251476848727	5.46395427610515	5.509485667449	5.05330416723071	-0.168556664924007	0.624395799344203	0.839393596001854
Merged-chr17-3224624-4	chr17	3224528	3224728	+	905.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101945.0	NM_001122998	24001.0	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	4.44033170274693	4.49426208690504	4.35451349919276	4.35439281064955	4.48650682039897	4.38922455991149	4.64750297099284	4.30636452364374	0.132598341828349	0.719137786201413	0.887785782541509
Merged-chr15-6705761-4	chr15	6705661	6705861	+	990.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2620.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	5.06271093173222	5.1929675210148	5.02860397882467	5.28438438891071	5.32048687991527	5.3041384005009	5.19942046653603	4.87530676147794	0.0619517831405919	0.84185149261034	0.939969997843283
Merged-chr12-31499785-7	chr12	31499643	31499843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134048)	promoter-TSS (NM_134048)	-127.0	NM_001253848	104836.0	Mm.273270	NM_134048	ENSMUSG00000020659	Cbll1	AI467391|Hakai|c-Cbl-like	Casitas B-lineage lymphoma-like 1	protein-coding	6.36484055329607	6.6466988760158	7.05386684228854	6.61295723541398	6.50949849700136	6.65270875657268	6.31427968649723	6.88430052657509	-0.123501391525668	0.616633186293412	0.83509320741657
Merged-chr6-87809804-4	chr6	87809740	87809940	+	963.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133717)	promoter-TSS (NM_133717)	-83.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	4.58281886335497	4.84175236702184	4.54039921210792	4.66360428057531	4.8506595959743	4.71562534237231	4.82939044579767	5.01034819832828	0.399089969056947	0.235832080783852	0.545860161228986
Merged-chr12-84847684-4	chr12	84847602	84847802	+	996.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 3 of 34)	intron (NM_013589, intron 3 of 34)	-28100.0	NR_028577	100303738.0	Mm.479389	NR_028577	ENSMUSG00000092130	D030025P21Rik	-	RIKEN cDNA D030025P21 gene	ncRNA	5.25260569209601	5.6511984022385	5.76122372518409	4.96823533637797	5.10458849000971	5.22892199145781	5.19601763113368	5.0832672643505	-0.511175496352442	0.129595508360606	0.400611425762163
Merged-chr13-66933056-7	chr13	66932933	66933133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025547)	promoter-TSS (NM_025547)	39.0	NM_025547	66410.0	Mm.347939	NM_025547	ENSMUSG00000021519	Mterf3	2410017I18Rik|Mterfd1	mitochondrial transcription termination factor 3	protein-coding	7.45751018267474	7.45218693574591	7.97294760286754	7.59827138928912	7.65202289526355	7.93519889736949	7.83198984724603	7.78350829574272	0.216719721334967	0.260514183761226	0.572324359311071
Merged-chr11-109363526-4	chr11	109363464	109363664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038097)	promoter-TSS (NR_038097)	90.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	5.74908391105588	6.14803158904401	6.32100597684042	5.81298997600502	6.43926730701089	6.36638448466358	6.19742907203181	6.38516905874656	0.512600615808654	0.0399344266868706	0.201587296397542
Merged-chr15-78802985-4	chr15	78802873	78803073	+	903.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130859)	promoter-TSS (NM_130859)	69.0	NM_130859	105844.0	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	5.34912411248491	5.36245989864495	5.06497318609973	5.094713162386	5.55940838338806	5.37384890103985	5.23586634132626	4.82944383881434	0.124126184758339	0.702802971436017	0.880421119462815
Merged-chr1-121567985-4	chr1	121567872	121568072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025860)	promoter-TSS (NM_025860)	8.0	NM_025860	66942.0	Mm.44219	NM_025860	ENSMUSG00000001674	Ddx18	2310005B10Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding	7.27733380213992	7.04384211605402	6.73158370178331	7.09692660946702	6.70712741548023	7.19908491247832	7.11555782245515	7.07774668433667	-0.034485509103337	0.874981943228438	0.952974613103639
Merged-chr17-70963760-4	chr17	70963681	70963881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	26735.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	7.03772734231654	7.09238783160612	7.14120389972037	4.50888980537868	6.99650031210833	6.62906330674606	6.89195595838097	7.99413576210248	0.592814267629351	0.46071021208461	0.74271114721283
Merged-chr14-20307789-3	chr14	20307684	20307884	+	954.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001359868, exon 6 of 10)	exon (NM_001359868, exon 6 of 10)	13094.0	NR_153364	67725.0	Mm.317636	NM_026341	ENSMUSG00000021809	Nudt13	4933433B15Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 13	protein-coding	3.30194447754097	3.29660377920655	3.47062617181538	3.55267998982483	3.6149872138401	3.35175473388049	3.34858598102762	3.3007332575919	0.000538499327142411	0.999184887636535	0.999578096120658
Merged-chr2-75792915-4	chr2	75792794	75792994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39283.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	5.85748608935415	5.70771840760386	5.90427060669471	5.98665823939958	5.95402049924811	5.72120898922325	5.65530758834436	6.14400969440216	0.020622059435044	0.936992694998817	0.977204440107264
Merged-chr18-35553373-4	chr18	35553270	35553470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038073)	promoter-TSS (NR_038073)	-40.0	NR_038073	100503380.0	Mm.482118	NR_038073	ENSMUSG00000097769	Snhg4	Gm17457	small nucleolar RNA host gene 4	ncRNA	6.49995757623772	6.2959859612169	6.21545140737138	6.42546049930933	6.38175805660995	6.39164818457967	6.26100026599634	6.37951479949281	-0.0192535237934231	0.929664261174172	0.974602301222681
Merged-chr1-14596192-4	chr1	14596097	14596297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	159769.0	NM_001360810	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	6.69812047216112	6.60730684661115	6.69930012626299	7.2706007664594	6.87663940994952	6.76603901371703	6.79379374539789	6.46297229190583	-0.182417458815306	0.458971327733983	0.741687745743801
Merged-chr14-47186712-4	chr14	47186597	47186797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008102, intron 1 of 5)	intron (NM_008102, intron 1 of 5)	2716.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	5.84492079031223	6.01819730398685	5.48935516441625	6.04391258235063	5.49981002999352	5.51238370682762	5.40221590531828	5.54296716499168	-0.655358224814682	0.0179443276451488	0.118914374588404
Merged-chr15-34238685-4	chr15	34238549	34238749	+	970.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033521, intron 1 of 6)	CpG	623.0	NM_033521	114128.0	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	5.31182634181673	4.98705011079889	5.54077339212228	5.20032766893101	5.03733711207461	5.27118208195862	4.81900619862892	5.09373536031469	-0.390824453452557	0.225667383275979	0.534197302012068
Merged-chr5-122843991-3	chr5	122843891	122844091	+	741.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30B_MM|LTR|ERV1	-6197.0	NM_030564	80751.0	Mm.388529	NM_030564	ENSMUSG00000029474	Rnf34	AW061037|AW536122|BC004042|C88279|RIFF	ring finger protein 34	protein-coding	3.31028625558877	3.42984626761607	3.37828782697795	2.95671422522889	4.193415114549	3.79681080673544	3.89694530596598	3.91303030327323	2.29391698843918	8.54892146867254e-06	0.000239379890329915
Merged-chr12-76371493-1	chr12	76371393	76371593	+	865.6666869999999	f0_balb.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	1227.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	4.52381959023065	4.10452998716385	4.03159551397626	4.15526179382421	4.5498827041554	4.40698253705321	4.34646551127163	4.36358521914521	0.509528450376374	0.19546878634287	0.496335357559189
Merged-chr2-73492231-3	chr2	73492088	73492288	+	843.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	Lx7|LINE|L1	-6435.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	3.43540150094999	3.70730759325941	3.81970476623264	3.41345075106049	3.70067461349652	3.84071156973318	3.6539198962482	3.86386705675095	0.52224154195813	0.277177616629122	0.589300206200641
Merged-chr5-36574342-3	chr5	36574249	36574449	+	761.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	MIRb|SINE|MIR	8048.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	3.19303743156004	3.35427536039778	3.30459090134616	3.24796730855781	2.95706927249214	2.97275139193298	3.23753765714542	3.1917853362125	-0.724544323949799	0.201717898437479	0.504156139969769
Merged-chr19-5875305-4	chr19	5875193	5875393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026169)	promoter-TSS (NM_026169)	-85.0	NM_026169	67457.0	Mm.202092	NM_026169	ENSMUSG00000024816	Frmd8	1200004M23Rik|2310035N23Rik|4931429L16Rik|AU018809	FERM domain containing 8	protein-coding	6.38930046034694	6.37996297769813	6.03145437422515	6.11502245027468	6.67884280020783	6.49472900014256	6.30479277002137	6.19922824033477	0.31213388366663	0.195493395706973	0.496354667296431
Merged-chr6-134274169-3	chr6	134274035	134274235	+	826.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122194.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	3.23652339412417	3.67275339697692	3.67332900414499	3.51821044600763	2.65912388602654	2.86783693668497	2.7503516975026	2.91013041006187	-3.94376084362164	4.30840256420325e-06	0.0001299439771684
Merged-chr5-21056719-3	chr5	21056620	21056820	+	946.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356591)	promoter-TSS (NM_001356591)	-809.0	NM_011203	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	3.4409202252862	3.68777202628327	3.83712883961612	3.90324317913359	3.73475279252989	3.85454798923226	3.77179386931501	3.97301433965365	0.269987700847388	0.569364688708177	0.809366519988776
Merged-chr17-87264142-10	chr17	87264022	87264222	+	764.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139295, intron 1 of 3)	intron (NM_139295, intron 1 of 3)	1825.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	3.67623058087309	3.85991972127307	4.11076456862444	3.9030957884908	3.69626185601372	3.795044234283	3.87155092754833	3.88570647693837	-0.248495074588519	0.582195359849638	0.816501953640427
Merged-chr10-40229547-4	chr10	40229463	40229663	+	997.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042556, intron 7 of 9)	intron (NM_001042556, intron 7 of 9)	17416.0	NM_001042556	67239.0	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	5.12967371886535	5.15090929913764	5.64743617681323	5.49983206358408	5.04885735545627	5.05058151409349	5.26220159033316	5.02208996804451	-0.523551713807269	0.0950522545903329	0.337341664812789
Merged-chr1-91398236-2	chr1	91398136	91398336	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023343, intron 1 of 11)	CpG	587.0	NM_023343	67444.0	Mm.337240	NM_023343	ENSMUSG00000026309	Ilkap	0710007A14Rik|1600009O09Rik|PP2C-DELTA	integrin-linked kinase-associated serine/threonine phosphatase 2C	protein-coding	2.87490977926466	2.83302569537888	3.09594794802206	2.80461625802302	2.85777422255846	2.6335913785803	2.67249850936973	3.04310706363865	-0.407216038944486	0.531666767479404	0.787536862264926
Merged-chr18-64516612-4	chr18	64516524	64516724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027350)	promoter-TSS (NM_027350)	-67.0	NM_001142950	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	8.37340108757436	8.6612437013507	8.55114038118608	8.37622507413299	8.49328202214896	8.5793013280882	8.59344126271311	8.25608659208286	-0.00867746482049795	0.958135364396121	0.98510133856897
Merged-chr15-59390466-4	chr15	59390404	59390604	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	B1_Mm|SINE|Alu	16306.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	5.14264734447865	5.24108410633787	4.49375808484799	4.23714051127904	4.74988904057833	4.67485022319999	4.42638336000762	5.13988859951284	-0.144314425692184	0.74247111062175	0.898494026733066
Merged-chr12-105784579-4	chr12	105784476	105784676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347440)	promoter-TSS (NM_001347440)	-121.0	NM_011112	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	8.59127279695125	8.96518732200462	8.88397175522051	8.7550371123474	8.46923739856991	8.5204406151948	8.36962743065703	8.20008491395404	-0.515175435398274	0.00177930648599591	0.0213645844073385
Merged-chr5-43248020-4	chr5	43247918	43248118	+	888.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177379, intron 3 of 10)	L3|LINE|CR1	-12664.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	4.13394583751204	4.35640615696838	4.55552341278484	5.35757485348672	4.21606617294978	4.02261138865513	4.49372914742891	4.77204709021125	-0.648822857408126	0.194879977235708	0.495582775979294
Merged-chr3-96104422-4	chr3	96104292	96104492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025614)	promoter-TSS (NM_001025614)	-135.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	5.93381599600725	5.69677220674672	6.02316391890073	5.67320069094178	6.36586029348337	6.01683808489657	6.20612387509221	6.10130342880167	0.572179215446369	0.0212544994459219	0.133292864851213
Merged-chr1-60097684-4	chr1	60097525	60097725	+	885.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139150)	promoter-TSS (NM_139150)	282.0	NM_021312	57750.0	Mm.281079	NM_021312	ENSMUSG00000026019	Wdr12	4933402C23Rik|Ytm1|Ytm1p	WD repeat domain 12	protein-coding	4.42132588568157	4.47899162244152	4.12065155461695	4.12635096802754	4.01652331387059	4.03345865589716	4.28193738854902	4.16578601847116	-0.41491126788835	0.315789967115579	0.627673454226908
Merged-chr15-55318885-4	chr15	55318792	55318992	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 1 of 47)	intron (NM_181277, intron 1 of 47)	11142.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	5.15920332350845	5.44377357046718	4.63786145610709	4.99054745943229	5.06068306556283	5.10083438645587	5.27780642462405	4.54021794546988	-0.127982626341662	0.731579857460786	0.893711507171347
Merged-chr8-43368742-3	chr8	43368606	43368806	+	896.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61697.0	NM_009556	22702.0	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	3.36604105393852	3.44289107896486	3.68344487725541	3.59802464088082	3.86911591503845	3.80504248431399	4.3787110293882	4.11064388185865	1.50717542415178	0.00204868375380279	0.0238156558732531
Merged-chr4-126103850-4	chr4	126103753	126103953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145827)	promoter-TSS (NM_001145827)	-104.0	NM_028800	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	8.34678555787331	8.4121280968019	8.23005841384547	8.08806288666835	8.29862089980293	8.50970363054937	8.30910570313485	8.10728411173099	0.0541116351115383	0.751052103239945	0.901974387957517
Merged-chr3-38187678-4	chr3	38187576	38187776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20443.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	5.82797454299472	5.9568068218603	6.69193982854292	6.67103754932119	6.50903689454643	6.76406898659175	6.62907493602128	6.72905153045515	0.435332382263356	0.122092234805183	0.387242288214953
Merged-chr9-84544905-4	chr9	84544813	84545013	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-229485.0	NR_040739	75253.0	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA	4.09637915638439	3.98459763785213	3.84995419746105	3.74627090304563	5.14405649936294	4.6679537812277	5.16382866922216	4.88512169646235	2.47369242533163	1.01047444113768e-10	7.70895608207278e-09
Merged-chr17-73052094-1	chr17	73051994	73052194	+	655.0	f1_c57bl6.idr	Intergenic	Intergenic	-55891.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	2.61117573118321	2.33213491494636	2.46058116090993	2.34753641253729	2.73759804393041	2.92359166763161	3.07276473838887	3.03503613107808	2.63462254723938	0.000155687993423884	0.00294335077926126
Merged-chr12-84408228-4	chr12	84408164	84408364	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028377)	promoter-TSS (NM_028377)	765.0	NM_007647	12499.0	Mm.10211	NM_007647	ENSMUSG00000021236	Entpd5	AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase	ectonucleoside triphosphate diphosphohydrolase 5	protein-coding	5.48415701692008	5.20459508749258	4.80794458080896	5.40543344666917	5.03078975491752	5.21625966594026	5.21161736501958	5.10617027562017	-0.226349042795671	0.481355353078249	0.756527913549795
Merged-chr7-28432556-4	chr7	28432442	28432642	+	878.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175021, intron 1 of 12)	intron (NM_175021, intron 1 of 12)	3649.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	4.52235748717306	4.29166086710791	4.03271794768689	4.30142556582087	4.4944528369405	4.21063523229644	4.30375784152792	4.32038663978492	0.110229166744171	0.780187569295238	0.914348744461444
Merged-chr9-114787928-4	chr9	114787819	114788019	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5926.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	4.97386990259637	4.86519336702557	5.20906496855757	5.30758178511919	5.71815305858016	5.88531510422568	6.05392562649708	6.4526275262446	1.57120296873032	7.31740602631181e-07	2.62787912990337e-05
Merged-chr2-5064056-4	chr2	5063974	5064174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181848)	promoter-TSS (NM_181848)	43.0	NM_181848	71648.0	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding	6.77236327878234	7.13854266580906	6.84813459895653	6.8666906358849	7.5123742652808	7.54967834979284	7.2682033109269	7.03122557108126	0.607441750252368	0.00381656951466993	0.0386319114739322
Merged-chr11-86652874-4	chr11	86652781	86652981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 5 of 11)	intron (NM_001356531, intron 5 of 11)	18394.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	5.98662258869055	5.60365100090551	5.27865053170124	5.37286465960776	5.98172772762855	5.96666112344851	5.47575413258578	5.96313768243913	0.472711217171242	0.115280465767597	0.375591535353678
Merged-chr18-62231578-4	chr18	62231474	62231674	+	923.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51474.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	4.93998760327405	5.25078462928689	5.15456577791192	4.56579216611625	4.4165330288831	4.6433872558392	4.73968729491358	4.59633993502952	-0.823103368675305	0.0292439516648087	0.164471810647078
Merged-chr9-122122316-4	chr9	122122203	122122403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357776, intron 1 of 5)	intron (NM_001357776, intron 1 of 5)	4844.0	NM_001357776	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	5.93446023717602	5.71519416707039	5.7981119765962	6.14901137413727	5.74948690748841	5.64759192111383	5.83882700704289	5.84144451207508	-0.250860790050737	0.336796610149102	0.646673839761617
Merged-chr14-67234557-4	chr14	67234446	67234646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360202)	promoter-TSS (NM_001360202)	-98.0	NM_001360202	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	5.83802237514992	5.77668108498627	6.30630121226331	6.27338647737284	6.0391901077529	5.86064383996133	5.88068612678662	6.01764802836422	-0.197409115208066	0.45329802455209	0.737415719616292
Merged-chr3-32736874-4	chr3	32736807	32737007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029017)	promoter-TSS (NM_029017)	-152.0	NM_029017	74600.0	Mm.288960	NM_029017	ENSMUSG00000037531	Mrpl47	4833424P18Rik|CGI-204|Gm9859|L47mt|MRP-L47|MTF/L47|NCM1	mitochondrial ribosomal protein L47	protein-coding	8.70729191730199	8.81308957430937	8.81126474833329	8.67951889848574	8.78271640875929	8.74623343759055	8.48539059494698	8.60529669061575	-0.112175068484495	0.459897858684828	0.742271214480192
Merged-chr17-31994331-2	chr17	31994231	31994431	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028902, intron 6 of 7)	L1MEd|LINE|L1	40177.0	NM_028902	74377.0	Mm.75856	NM_028902	ENSMUSG00000002076	Hsf2bp	4932437G14Rik	heat shock transcription factor 2 binding protein	protein-coding	3.69205913100902	3.35998650124883	3.3687637361904	3.34764287385618	3.47140777467477	3.85965280481967	3.52640131405701	3.36707314845193	0.400668489706002	0.437446068590053	0.725709827551994
Merged-chr16-95730017-2	chr16	95729917	95730117	+	586.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27610.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	3.61754661838827	3.14776514681293	3.4751722685227	3.1819238402887	3.30389180719002	3.23580678770448	3.18016501838362	3.57043731719343	-0.109130128084563	0.845740244734395	0.941564790489552
Merged-chr3-59341810-4	chr3	59341697	59341897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162884, intron 1 of 6)	Lx8b|LINE|L1	2459.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	6.01725370281265	5.80732730428238	5.64184963611066	6.01083135011838	5.5714797883651	6.21166471192477	5.71783883533026	5.66495685380735	-0.12903809538698	0.6460020270275	0.851167640624013
Merged-chr14-50799995-3	chr14	50799897	50800097	+	823.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4269.0	NM_001111119	239083.0	Mm.343880	NM_001111119	ENSMUSG00000071470	Ccnb1ip1	Gm288|Hei10|mei4	cyclin B1 interacting protein 1	protein-coding	3.37528645600767	3.26432796901882	3.24771092207751	3.56816337724275	3.61521997054668	3.71765242384446	3.36362406341047	3.91340479330288	0.908394679004422	0.089046439488394	0.325572042138093
Merged-chr1-132391785-4	chr1	132391674	132391874	+	922.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178874)	promoter-TSS (NM_178874)	-388.0	NM_178874	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	4.67416718019074	4.8909408609886	4.71346974930033	5.1587333425133	4.51835364017801	4.39352941561601	4.65312884084265	4.59122030351876	-0.750050454958571	0.0391686317759349	0.199079621215271
Merged-chr10-57727858-4	chr10	57727759	57727959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	-57064.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	8.11268850643482	8.076566611907	7.96132827472305	8.40913247168784	7.93254440729927	7.82814718420083	8.24969256274198	7.97003171212637	-0.199208274768247	0.284171674901673	0.596140750009614
Merged-chr2-30205820-4	chr2	30205741	30205941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356474)	promoter-TSS (NM_001356474)	6.0	NM_001356475	70266.0	Mm.216089	NM_172404	ENSMUSG00000039648	Kyat1	2010009K05Rik|AI182306|Ccbl1|Gtk|Kat1|KatI	kynurenine aminotransferase 1	protein-coding	7.28153324265273	7.44571008781962	7.2510248300705	7.13867915480456	7.35789245465022	7.3276244238543	7.17128408369901	6.87442031248345	-0.105668777729175	0.59979314730084	0.826560500894977
Merged-chr2-160627362-4	chr2	160627359	160627559	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18438.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	4.68291859399729	4.44465988335709	4.85606915480124	4.66575796211296	4.39110096496687	4.61504467573073	4.42026592587491	4.56468825579556	-0.382205062215322	0.290741145760565	0.60300894589269
Merged-chr11-23256434-4	chr11	23256345	23256545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134014, exon 2 of 26)	5' UTR (NM_134014, exon 2 of 26)	404.0	NM_134014	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	5.61314723387151	5.63261603523115	5.26045912926235	5.46727608713991	6.31600398396543	6.06698023462686	6.16038816057422	6.15177870918798	1.09614391098354	1.24483804632697e-05	0.00033588448559328
Merged-chr7-34176462-3	chr7	34176363	34176563	+	867.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-7934.0	NM_016682	50995.0	Mm.27560	NM_016682	ENSMUSG00000052997	Uba2	AA986091|Arx|Sae2|UBA1|Ubl1a2|Uble1b	ubiquitin-like modifier activating enzyme 2	protein-coding	4.53701484717629	4.80910246886552	4.6738944489236	3.75218852850867	4.03464562195984	4.02540208119023	3.76251580980045	4.008800345256	-1.33925352618979	0.0073077547316194	0.0628210958987847
Merged-chr12-55491280-4	chr12	55491209	55491409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010907, exon 3 of 6)	exon (NM_010907, exon 3 of 6)	1338.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	6.40194361639492	7.34127253112413	6.52531115434545	5.35617726481323	7.03120182726776	7.34064765337047	6.44069549502462	5.74570618965485	0.238453855160319	0.734895635707629	0.895321120308658
Merged-chr17-65737836-4	chr17	65737721	65737921	+	928.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	34931.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	4.80527553700431	4.97881115912435	5.13686772344799	5.04594001580957	4.85471289478231	4.86320970701952	4.58104144381676	4.6843005872077	-0.497801064519109	0.134234004243576	0.40785454099923
Merged-chr14-120263599-4	chr14	120263498	120263698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12071.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	6.54174553050232	7.08005962655517	6.59109767116922	6.51779870280351	6.63195374724315	6.65238855782165	6.35347045804413	6.24477517505441	-0.313037858193317	0.201477307742411	0.503898569493924
Merged-chr9-89210552-4	chr9	89210475	89210675	+	706.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026829)	promoter-TSS (NM_026829)	-615.0	NM_026829	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	3.14756120691602	2.99242920642125	3.27902094793572	3.06174590992204	3.60765594557241	3.5726050772326	3.81211844300814	3.55740160133087	1.83859920790732	0.00042107732776	0.00670661515162878
Merged-chr4-109214190-3	chr4	109214086	109214286	+	988.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4227.0	NM_001285895	108802.0	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	4.85682562540312	4.69426931821676	4.72058097886484	4.96982871560992	4.41178358366112	4.4254770906619	4.73318003744827	3.8184625503617	-0.952117336197095	0.0244253682873514	0.146098595741629
Merged-chr11-51858391-1	chr11	51858291	51858491	+	1000.0	f0_balb.idr	promoter-TSS (NM_199299)	promoter-TSS (NM_199299)	-761.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	4.80484005724356	4.59307301157806	5.13120318842159	4.60991859530173	4.49517698989886	4.904406711146	4.66722028335405	5.18354814018589	0.0804208978118896	0.831859756723295	0.935652057925475
Merged-chr11-116427685-3	chr11	116427561	116427761	+	742.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-6433.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	3.17353470555492	3.15284632663821	3.37936735907254	3.05961276823626	3.06038888186353	2.73451669730825	3.04640572389183	3.05572529369028	-0.848464298718213	0.16624158553891	0.45739103711385
Merged-chr10-17775318-4	chr10	17775231	17775431	+	949.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20888.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	4.64082379964077	4.01185668313337	4.51644465701688	4.46139112952344	4.79616200106841	4.96340315895353	5.1303284756765	4.59818427543636	0.975684930783653	0.0109637847112459	0.084284613021036
Merged-chr4-154915520-4	chr4	154915419	154915619	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	12558.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	4.2625821555818	4.22774314707688	3.96511151557101	3.99761206615774	5.23907053460808	5.10269305605301	4.90379439366421	5.3609465512911	2.26098057216251	3.13506699030797e-10	2.22705522258614e-08
Merged-chr7-132929939-4	chr7	132929831	132930031	+	842.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1211.0	NM_207302	360216.0	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	4.77418107585294	4.01756042965449	4.55097814016535	4.33395207619098	4.81468776712509	4.68364585384773	4.56962302323971	4.66481254755609	0.556928219500727	0.152850772619756	0.437291867803211
Merged-chr7-30683625-3	chr7	30683521	30683721	+	928.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-12016.0	NR_027848	74927.0	Mm.87326	NM_183108	ENSMUSG00000049761	Pmis2	1700071L20Rik|4930479M11Rik	Pmis2, sperm specific protein	ncRNA	3.80179887617623	3.79421985809892	3.90344955724203	4.02552360872428	3.92296330743746	3.48644339665937	4.14625525504312	3.90114368314108	-0.00892989756352551	0.984944004908392	0.994512299189622
Merged-chr9-118609497-4	chr9	118609414	118609614	+	911.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	2805.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.13905094162325	3.44485912723968	3.68016966588728	3.57369478801211	3.53465788800391	3.45910490027227	3.80228574687809	3.77257713624561	0.539736682344156	0.305707972075588	0.618093672613785
Merged-chr3-10025973-4	chr3	10025875	10026075	+	962.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13390.0	NM_001272098	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	5.02998962372706	4.55823394768763	4.80323747042061	5.1778660652962	5.49890094966482	5.20591340549983	5.41507591197993	5.06169707401251	0.71615519834342	0.0364028435983144	0.189757911833199
Merged-chr10-83565623-3	chr10	83565526	83565726	+	781.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033375, intron 14 of 32)	intron (NM_001033375, intron 14 of 32)	21685.0	NM_001033375	319277.0	Mm.491194	NM_001033375	ENSMUSG00000034560	Washc4	A230046K03Rik|AA589518|Kiaa1033|mKIAA1033	WASH complex subunit 4	protein-coding	4.00867694976987	3.88701075502164	3.91600860441828	4.05130135725717	4.04804574226588	3.82425479424393	3.69240366543527	3.70427161136907	-0.382242991320947	0.397167218119325	0.695612493933522
Merged-chr7-89270668-4	chr7	89270564	89270764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 4 of 14)	intron (NM_001360746, intron 4 of 14)	68123.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	5.84363345364241	5.54707829970981	5.29790328234581	6.15808175177419	5.47063345728132	5.80223912448785	5.72327278788309	5.48394297838803	-0.248820743682256	0.427463185826832	0.718603162473499
Merged-chr3-116482917-4	chr3	116482815	116483015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25260.0	NM_025517	66368.0	Mm.251228	NM_025517	ENSMUSG00000000339	Rtca	2310009A18Rik|AI450277|RPC|Rtcd1	RNA 3'-terminal phosphate cyclase	protein-coding	5.57352229152869	6.03754638363381	5.65911236335094	5.94822773128755	5.9948671057972	5.96429014234163	5.80752505045549	5.98893878171108	0.174443168981021	0.5009478449282	0.769041902372859
Merged-chr5-77265256-4	chr5	77265159	77265359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011263)	promoter-TSS (NM_011263)	-235.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	7.01353642752398	6.97211320786728	7.35868173956757	7.34435782920778	6.80276000713598	6.71846835712743	7.06275446327991	6.76478202242595	-0.479903552048143	0.0225929042344899	0.138812285758028
Merged-chr7-126773496-3	chr7	126773408	126773608	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024228, intron 9 of 9)	ORR1A4|LTR|ERVL-MaLR	-3467.0	NM_026875	66090.0	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee like 3	protein-coding	4.52487660189358	5.33764328656921	4.60012695297122	4.92643063019729	3.46129647864828	3.61372507873303	3.5495274548904	3.7726393771772	-3.78999855082597	2.78888798906786e-11	2.33541480204543e-09
Merged-chr3-31394084-4	chr3	31393970	31394170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83751.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	6.33958576901044	6.10543287172138	7.4604658443773	7.23345011405455	6.22499761666084	5.68529110771308	6.51488529722283	5.99294633621871	-1.12138515965875	0.0335568722819197	0.180376424418876
Merged-chr15-78321050-4	chr15	78320945	78321145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4755.0	NM_001358854	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	6.26760888233992	6.52094208258223	6.63264023269902	6.3081348133995	6.40080959454342	6.23846475824904	6.32863810348161	6.03347607678542	-0.253464610058947	0.27801960903725	0.590139795176764
Merged-chr13-69809849-4	chr13	69809749	69809949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138596)	promoter-TSS (NM_138596)	-33.0	NM_138596	28077.0	Mm.52583	NM_138596	ENSMUSG00000021598	Med10	AA959813|AI385605|C78613|D13Wsu50e	mediator complex subunit 10	protein-coding	7.06684576051767	7.16381671274262	6.92871417454919	7.11999157113384	7.07114691597755	7.10575717770339	7.25107377534137	6.79716397977178	-0.0143279717445689	0.942198080705973	0.979062797089676
Merged-chr1-92648950-4	chr1	92648848	92649048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153114)	promoter-TSS (NM_153114)	-107.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	5.10700765175285	5.2910874682774	4.95830243059716	5.52902261336862	5.41708001139409	5.28473608463254	5.41978835152263	5.57163661060799	0.291673186423477	0.347300832940076	0.655421321627958
Merged-chr7-110313580-4	chr7	110313473	110313673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 37 of 40)	intron (NM_177324, intron 37 of 40)	91870.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	7.80790683244428	7.68951879942171	8.20448362134845	8.04552277298854	7.47734131397914	7.32011798829646	7.5238590193234	7.53744237318846	-0.636445190684537	0.000779734008338401	0.0110076729431811
Merged-chr2-36009563-3	chr2	36009458	36009658	+	771.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29934.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	3.95308731143111	3.42702152207527	3.54394417520943	3.75793046362631	4.03936731511722	3.66057730459056	3.74952144450438	3.81268162632443	0.419143670990292	0.390762578713644	0.69069060389646
Merged-chr15-13244512-4	chr15	13244425	13244625	+	874.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70850.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	4.37958315520673	3.47975366666857	4.41951029683357	4.56150033435482	4.25396864757559	3.96837579557233	4.31964079461786	4.20741089401079	-0.2002286206269	0.69899786146646	0.87857970653931
Merged-chr10-79925476-4	chr10	79925384	79925584	+	989.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1559.0	NM_001288626	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	6.14890992045794	6.20182354877027	5.45742610489014	5.89981685413708	6.05621655348462	5.87420505316113	5.9782728461822	6.10693043112069	0.0795015843112886	0.769444189895008	0.909742530773464
Merged-chr5-139331913-3	chr5	139331831	139332031	+	819.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6467.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	3.62109358405389	3.90420777376544	3.37645549645939	3.72286116888725	3.32595318104699	4.0876588005584	3.811483983695	3.67435149906964	0.226407626750847	0.6709528933318	0.86442506506053
Merged-chr19-53119457-4	chr19	53119358	53119558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20985.0	NM_001164099	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	5.72780996081325	5.61862612562768	5.62161159176645	5.85199798289589	5.91760828546832	5.95475958964305	5.86698288578683	6.22632141692429	0.442839317990031	0.0826374135598283	0.312228970061368
Merged-chr11-80178510-3	chr11	80178438	80178638	+	831.023804	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172133, exon 11 of 11)	3' UTR (NM_172133, exon 11 of 11)	-5334.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	3.06408272555696	2.84555180613278	3.41275422470059	2.92303448667417	2.6061521855119	2.85061818435091	2.80396614647312	3.00431709480916	-1.13065805455526	0.0907598202366967	0.329131508285502
Merged-chr11-83534393-2	chr11	83534293	83534493	+	975.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-3875.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	3.18388202939121	3.02066220761344	2.92433588039231	2.92575040698348	3.33033398510284	3.35584073709919	3.17223586158191	3.44780100397229	1.23311719874028	0.0250771407521794	0.148709972640121
Merged-chr2-155383346-3	chr2	155383258	155383458	+	938.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178111, intron 1 of 3)	intron (NM_178111, intron 1 of 3)	1502.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	3.65871465422106	3.64775907901563	3.60765024640383	3.60418920554611	3.50494737211417	3.42644762454358	3.54021453777431	3.75382395174672	-0.216500764897617	0.653184436738622	0.854997557892684
Merged-chr6-52838899-4	chr6	52838808	52839008	+	997.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 2 of 4)	intron (NM_173406, intron 2 of 4)	70712.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	5.14475105518858	5.30336576324307	5.072904033388	5.40712996464247	5.55102522552615	5.90190240337172	5.37438855796885	5.48163782771781	0.584297295983355	0.0503292151125646	0.232773437459209
Merged-chr11-72866689-4	chr11	72866581	72866781	+	656.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001045536, exon 24 of 55)	exon (NM_001045536, exon 24 of 55)	70455.0	NM_001045536	195018.0	Mm.272030	NM_001045536	ENSMUSG00000055670	Zzef1	8430405D05Rik|BC051585|C130099L13Rik|C85424|NSPA|mKIAA0399	zinc finger, ZZ-type with EF hand domain 1	protein-coding	3.48541851292497	3.47228288194649	3.60255598561035	3.72105156765934	3.4521905593409	3.5397688073152	3.96717258681054	4.06326326076549	0.59464798758549	0.246970858882545	0.558168726560377
Merged-chr17-13898037-4	chr17	13897950	13898150	+	960.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 31 of 33)	intron (NR_151731, intron 31 of 33)	-50323.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	4.68617380752832	4.3725465611612	4.89349234574891	5.0895177257122	3.96595058937331	4.3219997260443	4.54817988373732	4.79117147227313	-0.784360136612217	0.0699316690903484	0.283004304313503
Merged-chr6-90569892-4	chr6	90569779	90569979	+	892.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027406, exon 10 of 23)	exon (NM_027406, exon 10 of 23)	19086.0	NM_027406	107747.0	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	3.38552885736727	3.5627111043717	4.03466479175683	3.97092758933432	3.7746622899008	4.02218943631095	3.92915146232342	3.69379456412103	0.240833193353404	0.634407148755623	0.845120273268388
Merged-chr16-32673074-4	chr16	32672945	32673145	+	851.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347185)	promoter-TSS (NM_001347185)	-109.0	NM_001347185	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	3.77818170966217	3.63975175686845	3.61072497129623	3.99690780384352	3.97093558058284	3.78689323914381	4.04185667401084	3.87742924851999	0.402553573776916	0.386223266007578	0.687552275421561
Merged-chr7-105739226-4	chr7	105739111	105739311	+	909.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161724, intron 2 of 12)	intron (NM_001161724, intron 2 of 12)	-1826.0	NM_133951	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	4.77369994780606	5.54105914085107	5.04348092733338	4.88312763477538	5.20738566764381	5.14839272306119	5.35003061080273	5.00492029221818	0.172074787408282	0.61637475291193	0.834943450262974
Merged-chr6-97482080-4	chr6	97481968	97482168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	MIRb|SINE|MIR	5752.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	6.5583215533474	6.60796434734218	5.97436450673042	6.74027322295616	6.11769163387866	6.31513100526491	6.63016490293046	6.52320062796428	-0.158687679059843	0.54684719297863	0.796579001903773
Merged-chr13-107057848-3	chr13	107057742	107057942	+	792.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35272.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	2.69120339179434	2.82842276009137	3.15617816624791	3.05002530307089	3.248375634965	3.1491172498223	3.14369964368731	3.20908085713367	0.95648753131446	0.118056610027976	0.380134255210221
Merged-chr9-95574106-4	chr9	95573984	95574184	+	892.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14267.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	4.14665874019572	4.52085313902688	4.33308866133155	4.35617552372039	4.32448363697396	4.37005433495721	4.27021923108921	4.28643942404477	-0.0877930807877918	0.818549662198096	0.930445174876607
Merged-chr2-69206228-4	chr2	69206130	69206330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305800)	promoter-TSS (NM_001305800)	-17.0	NM_001199123	66442.0	Mm.272969	NM_025565	ENSMUSG00000005233	Spc25	2600017H08Rik|2610205L13Rik|Spbc25	SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding	8.2480767227723	8.2232074803767	8.05901941016887	8.58296105801563	8.03270411288668	7.97171026540254	8.12834523042064	8.07990768290713	-0.318087728144011	0.0746360728905804	0.294583621619087
Merged-chr16-17205525-2	chr16	17205425	17205625	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-2610.0	NM_001033338	239731.0	Mm.86671	NM_001033338	ENSMUSG00000071636	Rimbp3	Gm1759|Gm603|RIM-BP3|mKIAA1666	RIMS binding protein 3	protein-coding	2.48754283207198	2.41763428104632	2.26689589864427	2.59996586644079	2.51049226553744	2.65846092139045	2.60735025357838	2.73273536700005	0.886311014270531	0.218116111943116	0.525141615884151
Merged-chr3-98005525-4	chr3	98005441	98005641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7997.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	5.87828651343049	5.81172938877726	5.63575741952343	5.75154468353587	5.78690346123309	6.11697204923651	5.49596049097704	5.5196852240022	-0.0302301522596138	0.912822735407936	0.967354887470906
Merged-chr18-4254895-3	chr18	4254774	4254974	+	783.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89042.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	3.86669338247109	3.84799405790078	4.01066591792658	4.08019453208041	3.75141664883768	4.08674807490052	3.85128972837688	3.64551582744583	-0.349530919921804	0.439492288189674	0.72737230804772
Merged-chr17-56476531-4	chr17	56476428	56476628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011218)	promoter-TSS (NM_011218)	-48.0	NM_011218	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	6.11939941243077	6.31360990534542	5.94337470047695	6.00280524041079	6.32624393329248	6.53782680396895	6.12994631551345	6.27236681083813	0.342689873927227	0.149661700843344	0.432035602283179
Merged-chr13-59798520-3	chr13	59798427	59798627	+	797.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 14 of 27)	intron (NM_153538, intron 14 of 27)	24620.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	3.65849136405745	3.37519170358081	3.49564349178534	3.44130037115404	3.64373461355929	3.72444807471593	3.59226788046499	3.80149041663053	0.637718803693022	0.180632847519366	0.477043671146927
Merged-chr19-38043558-3	chr19	38043455	38043655	+	905.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099634)	promoter-TSS (NM_001099634)	22.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	4.09122363128844	3.87922780101648	4.13219133792529	3.86382686654866	3.89084682635839	3.58707568194616	3.58378993105532	3.53344387858787	-0.946084606678865	0.0509409476513192	0.23414044724705
Merged-chr13-34647837-3	chr13	34647749	34647949	+	651.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025831, intron 1 of 4)	intron (NM_025831, intron 1 of 4)	4832.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	2.97512625139616	3.00296472378319	2.91896773121088	3.03346379856748	2.74066788795787	2.53555708327812	2.7242586127692	2.73131196794743	-1.44576310207929	0.0300653304747786	0.167463820163101
Merged-chr14-68672054-4	chr14	68671934	68672134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16192.0	NM_183366	13522.0	Mm.117450	NM_010082	ENSMUSG00000014725	Adam28	C130072N01Rik|D430033C21Rik|Dtgn1|MDC-L|MDCL|TECADAM|eMDCII	a disintegrin and metallopeptidase domain 28	protein-coding	5.72024414401958	6.29523764650041	5.9855851091372	5.62807716162325	5.65779266302206	5.65685277304419	5.26160735314028	4.97686485720246	-0.843008143788485	0.00989829270691756	0.0783269123497149
Merged-chr1-154256982-4	chr1	154256874	154257074	+	832.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040629)	promoter-TSS (NR_040629)	-68.0	NR_040629	78112.0	Mm.401935	NR_040629	ENSMUSG00000099933	4930452N14Rik	-	RIKEN cDNA 4930452N14 gene	ncRNA	4.32403470206767	4.48610196966985	4.70132519364313	4.83806963542664	3.98783219096284	3.91540208874264	4.21528814601929	4.02848943323731	-1.41788013389858	0.000697195922889521	0.0101070689603571
Merged-chr6-83121539-4	chr6	83121408	83121608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016757)	promoter-TSS (NM_016757)	-47.0	NM_001083922	22377.0	Mm.1109	NM_016757	ENSMUSG00000030035	Wbp1	AI255152	WW domain binding protein 1	protein-coding	8.63489770162059	8.83389313814747	8.67196422113585	8.86814793676042	8.66004480310019	8.67524900014165	8.73764159973204	8.47165762242809	-0.15096074473359	0.3255113434198	0.637069259899309
Merged-chr7-74662167-3	chr7	74662062	74662262	+	917.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107382.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	3.37993082730547	3.13933470520676	3.63767517428581	3.02783754108687	4.08816044758221	4.37330485563859	4.25548883192015	3.85207915233277	2.66390799772175	3.15141865095781e-07	1.21711789558614e-05
Merged-chr5-3343120-5	chr5	3343033	3343233	+	931.657166	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009873)	promoter-TSS (NM_009873)	-760.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	4.36446123327068	4.37367382143213	4.57353302744289	4.25358617725095	4.30094736091952	4.74448268212954	4.20398492880657	4.81401437074099	0.337968193019068	0.396331471581578	0.69519327480908
Merged-chr13-113490165-2	chr13	113490065	113490265	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	12679.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	3.87523242217821	3.58307363692976	3.97398319806504	4.00074532617814	3.84136698744184	3.64578426535337	4.35338612164335	3.97156089219919	0.290789948493434	0.546414359642416	0.796367024392978
Merged-chr16-4594556-6	chr16	4594492	4594692	+	815.777771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031184)	promoter-TSS (NM_031184)	-121.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	3.95203331925369	4.44390406846211	4.00429500482242	3.9982182868624	4.03475267656285	4.27380662573078	3.82801095640035	4.27460689529534	-0.0058820828651789	0.989387624755137	0.995738730893543
Merged-chr11-118469999-4	chr11	118469896	118470096	+	829.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57-int|LTR|ERV1	-6836.0	NM_172573	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	4.1410381843433	3.66262817094471	4.30171248116733	3.72408751496903	3.87020574438983	3.80607545423513	4.07967368000674	4.05078437691194	-0.0483750276914782	0.918597091363073	0.970054173425813
Merged-chr7-100818726-3	chr7	100818630	100818830	+	898.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178764, intron 4 of 8)	intron (NM_178764, intron 4 of 8)	44683.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	3.62110702824376	3.73823800694255	3.5680707268143	3.79011552272685	3.73180898813944	3.50579353448433	3.55440442749566	3.39120979910192	-0.410160791969474	0.405353157850018	0.702255804744808
Merged-chr6-72517698-4	chr6	72517590	72517790	+	829.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26701.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	3.89531698171581	3.74607601860106	3.73294891543294	4.00933571320206	3.65277357587723	4.0183815939175	4.10983191980781	4.32228044751687	0.494851320204981	0.291408865849328	0.60371229002408
Merged-chr6-127582927-3	chr6	127582827	127583027	+	821.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033464, intron 1 of 6)	intron (NM_001033464, intron 1 of 6)	4952.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	3.3697683153205	3.49977496229531	3.9080557191427	3.69293288542077	3.31505964248183	3.48449556124283	3.35820064514465	3.368507429547	-0.86247725122556	0.100177116446147	0.34735517203431
Merged-chr4-43044885-4	chr4	43044794	43044994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	1326.0	NR_045567	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	6.70021185036369	6.66543152064136	6.52506850502615	7.07333304238566	6.7159000022458	6.30490391352144	7.06002467693019	6.79711844480327	-0.0321948651778488	0.897215141794621	0.961579251319507
Merged-chr14-74944845-3	chr14	74944745	74944945	+	923.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	3032.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	4.19140748185157	4.09370818141026	3.95010144394766	3.9960742170329	4.00735037839212	4.12704884442904	3.76626059285666	4.6611131455901	0.314922432949614	0.493745018143389	0.764438087754564
Merged-chr2-153410360-1	chr2	153410260	153410460	+	802.666687	f0_balb.idr	3' UTR (NM_001134300, exon 11 of 11)	3' UTR (NM_001134300, exon 11 of 11)	34119.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	3.91148548192274	4.06256745402895	3.81146100434358	4.12990364026732	4.02250726601991	3.76142903480035	3.74356339883978	3.64243039654764	-0.517983191219923	0.262120015867599	0.574100843086496
Merged-chr4-45966171-4	chr4	45966058	45966258	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290475, intron 1 of 16)	intron (NM_001290475, intron 1 of 16)	823.0	NM_001290475	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	5.64853979992106	6.30832307174999	5.51719392631351	5.21126011392073	5.25329229570789	5.92021937326332	5.31120790032089	5.126360490673	-0.505568957320071	0.173234682996002	0.467220322400386
Merged-chr18-25538407-4	chr18	25538355	25538555	+	898.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	141293.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	3.54612045911288	3.93917718270347	4.10820951731455	3.90979280270353	4.02284232732477	4.03438525401716	4.21883500482097	4.52829462336474	0.840979335192525	0.065122527597251	0.271536086844931
Merged-chr16-31867014-3	chr16	31866931	31867131	+	970.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 21 of 22)	L1M4c|LINE|L1	-11779.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	4.21491765484438	4.14085420278162	4.4420979374461	4.36993830881932	3.5494757343452	3.77526512639751	3.64134378039734	3.88477079345683	-1.67975301124993	0.000255322612105617	0.00444451166717185
Merged-chr12-25090460-8	chr12	25090240	25090440	+	698.395813	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5752.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	4.28009832840939	4.47212352341101	3.68666036115337	3.15377142259088	3.44633235771645	3.81089534904736	3.67155777528984	3.79526395190893	-0.874744924997775	0.141810569031896	0.418983048240956
Merged-chr17-12030964-4	chr17	12030838	12031038	+	736.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016694, intron 10 of 11)	intron (NM_016694, intron 10 of 11)	-88346.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	3.85651763589676	3.74481190599955	3.54002637732681	3.85344273576116	3.81238922425133	3.71509114660394	3.88580766140212	3.47717558224464	-0.0773571793950842	0.871274218435021	0.951595458010256
Merged-chr18-84442577-3	chr18	84442480	84442680	+	713.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 3 of 8)	intron (NM_001033341, intron 3 of 8)	146924.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	3.39716015805068	3.11060217327489	3.56474212358644	3.38866334415027	3.34972872011177	3.45324218678926	3.32469368462913	4.07078388846511	0.692058548365997	0.221980190673608	0.530047563717821
Merged-chr14-54398909-6	chr14	54398815	54399015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	10557.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	5.79528257926619	5.77556266552251	6.61167016377938	6.40979261543852	5.07344201023736	5.16259988604624	5.29209567193283	5.09460638745754	-1.77352393757527	3.19549222099964e-08	1.52894795167649e-06
Merged-chr5-41267958-2	chr5	41267859	41268059	+	711.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	439732.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	2.89172277109029	2.81591472541207	3.27295817486972	2.48743597821419	3.70686889835304	3.58816506170084	4.08107386695107	4.20407697787312	4.25278214811593	2.5876195571274e-09	1.54387403568124e-07
Merged-chr1-86202830-4	chr1	86202728	86202928	+	928.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027456, intron 17 of 20)	intron (NM_027456, intron 17 of 20)	48048.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	5.35839498278183	5.15016328195896	5.28291015001669	5.00030963875084	4.48087338883375	4.64372914636669	4.53570712094082	4.55329874490975	-1.33148943197646	0.000106531347595421	0.00214216633570632
Merged-chr18-75368571-2	chr18	75368471	75368671	+	990.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001042660, exon 1 of 4)	5' UTR (NM_001042660, exon 1 of 4)	1206.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	3.35282905461753	3.18777325600708	3.72358956554987	3.47055938125256	3.29889981493125	3.40474095130126	3.66055538538547	3.72123351921495	0.272589616167565	0.611384964628516	0.832286272412929
Merged-chr15-98513848-4	chr15	98513753	98513953	+	777.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	5981.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	3.26034744713837	3.56129931768644	3.56025467959951	3.29826082941623	3.5467202755773	3.78209296606724	3.49181030975804	3.70939206625726	0.697225927498024	0.162765427239441	0.452255606647826
Merged-chr2-125322791-2	chr2	125322691	125322891	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007993, intron 50 of 65)	intron (NM_007993, intron 50 of 65)	75276.0	NM_023595	110074.0	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	3.1052190668913	3.10622015511471	3.10559430080463	3.08943141100635	3.25345710333353	3.01773007777918	3.20836824216499	3.27275964238057	0.370602661864395	0.498370743456749	0.76759838054097
Merged-chr13-33934831-3	chr13	33934734	33934934	+	929.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243192, intron 2 of 7)	intron (NM_001243192, intron 2 of 7)	-1198.0	NR_040707	68808.0	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	3.47150339227955	3.49608723452726	3.73085952631026	3.64546760922236	3.56675737723529	3.3996387279822	3.51450820800811	3.63140445406996	-0.194234887853785	0.691883068297281	0.87467626526963
Merged-chr6-125166599-4	chr6	125166492	125166692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008084)	promoter-TSS (NM_008084)	-125.0	NM_001289726	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	6.83935654216899	6.6916642082047	6.15270249789052	6.35891139273007	7.28864412653161	7.1752357588682	7.60229797705222	7.12194568295897	1.0843835363585	4.06615785450801e-06	0.000123580294588397
Merged-chr17-49384455-3	chr17	49384366	49384566	+	960.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43898.0	NM_028464	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	3.2066407016806	3.34219207892259	3.51664570873262	3.97461563175374	3.75648028358469	3.68700849754434	3.44741044481113	3.39960297811973	0.0738628690101022	0.898438544835222	0.962182180379716
Merged-chr12-33314211-5	chr12	33314049	33314249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	11634.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	4.44926247443448	5.62920054810125	5.17757549098985	4.75714071630844	4.95144587126476	5.08820922024917	5.09144181061388	4.87361653325453	-0.156255147879354	0.699793503349593	0.87891235524103
Merged-chr6-135008414-4	chr6	135008326	135008526	+	946.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3186.0	NM_026360	67755.0	Mm.166524	NM_026360	ENSMUSG00000030204	Ddx47	4930588A18Rik|C77285	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding	5.23814085738447	5.15312246331691	5.11357454337152	5.59831255082815	4.81717289592174	4.51743942638268	5.15222047895903	5.40268659245017	-0.543117492055744	0.136941000792846	0.411508257743677
Merged-chr16-94725034-4	chr16	94724936	94725136	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	113617.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	4.87331945065277	4.97412476348435	5.18322351402478	5.20923261870416	4.75551144772606	5.05087095218724	5.27298653434789	5.26780748983673	0.0336975884485004	0.918840770244151	0.970157047278138
Merged-chr15-82807586-4	chr15	82807481	82807681	+	862.895874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13336.0	NM_029562	76279.0	Mm.439931	NM_029562	ENSMUSG00000022445	Cyp2d26	1300006E06Rik	cytochrome P450, family 2, subfamily d, polypeptide 26	protein-coding	4.08203923964282	4.03965395078014	4.03531374302827	4.24688962152022	4.06659466062967	4.00263707165802	4.01834447906528	4.08019347063059	-0.189302271006187	0.646060427990319	0.851204149823479
Merged-chr17-43040736-4	chr17	43040642	43040842	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 3 of 5)	RSINE1|SINE|B4	24187.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	5.2349569643442	5.33860043604222	5.47278933746889	5.39958087935668	5.34529048185346	5.5336725885586	5.49781126910199	5.19933555010219	0.0531697704752807	0.850871984074581	0.94375183545126
Merged-chr1-10268563-1	chr1	10268463	10268663	+	565.0	f0_balb.idr	Intergenic	Intergenic	-35893.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	3.20218356062395	3.29252610514777	3.31754308794779	3.34366473464385	3.31590317977419	3.31295013625524	3.24933518830846	3.13958857195996	-0.131391510942264	0.804150447619026	0.924560640796567
Merged-chr15-62011928-4	chr15	62011834	62012034	+	877.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-26052.0	NR_132747	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	4.65280982631332	4.12609365289836	4.10776648294392	4.75065540302209	4.22154860614918	4.42990008663921	4.28269076552608	4.20582880325675	-0.406764901998143	0.339419042408835	0.648745511060186
Merged-chr2-150841334-4	chr2	150841228	150841428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 6 of 12)	B2_Mm2|SINE|B2	1242.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	5.51608180486737	5.38079758434575	5.34430973511762	5.42546294476205	5.57857747736151	5.60751031061474	5.43472231600779	5.5131702871429	0.205978590644578	0.442193581004485	0.728973687433547
Merged-chr7-75596247-4	chr7	75596144	75596344	+	926.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 5 of 36)	intron (NM_029332, intron 5 of 36)	140710.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	5.14926447430719	4.96045382726231	4.83264963996376	5.39068111926171	4.51001595782321	4.32465783110674	4.53071897407971	4.54839719179418	-1.32985517210737	0.000253475345419607	0.0044155951080818
Merged-chr9-121309416-4	chr9	121309324	121309524	+	736.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	11922.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	4.29297846942079	3.58946451768938	3.65452400137777	4.00981616054175	3.97580025072674	4.25439673738127	4.19411653184755	4.03451718993129	0.517578575656457	0.2721852647004	0.583708684767249
Merged-chr14-55681965-4	chr14	55681852	55682052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145705)	promoter-TSS (NM_145705)	-135.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	8.14602667819554	8.18438496662172	7.82626256223299	7.96748427440133	7.68327463793431	7.84936319529915	7.6609250482203	7.86598069151088	-0.355077632667809	0.0409298210973608	0.204560015158618
Merged-chr5-43855020-4	chr5	43854923	43855123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13786.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	6.12438644393114	5.11573223248208	6.41053806030706	6.40070043311116	5.27674568857215	5.18608498407242	5.37188301655964	4.99418232237801	-1.49963015156995	4.06898582610196e-05	0.000946491314104938
Merged-chr4-145196761-4	chr4	145196658	145196858	+	830.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1753.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	3.57563623576167	3.96511554694281	3.69060481229202	3.91849333227069	3.91671384505765	3.49793503099274	4.04877328759156	3.68861062760131	0.0142660188282287	0.976813696340062	0.991723386354742
Merged-chr17-34249966-4	chr17	34249867	34250067	+	944.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11062.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	5.1340600195448	5.70490212951852	4.80234677270329	4.15397462905778	5.51900417009357	5.06425660399573	5.14120820305244	5.28461192966169	0.350283880931727	0.422791771437362	0.714904276021855
Merged-chr9-37093167-3	chr9	37093065	37093265	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 1 of 12)	intron (NM_001029838, intron 1 of 12)	54157.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	5.96583165406895	6.11985791822712	5.7021507028203	6.16761557303983	4.81366533316056	4.37775180502045	4.40274215180424	4.53202116094126	-2.7328190192954	4.71329808505813e-14	6.57819302737946e-12
Merged-chr19-7580831-1	chr19	7580731	7580931	+	580.5	f0_balb.idr	intron (NM_001362425, intron 4 of 4)	intron (NM_001362425, intron 4 of 4)	23346.0	NM_001362425	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	2.72315551421149	3.07606673278079	2.72335688814331	3.23091670675807	3.04309650600137	3.36215616114339	3.33716458553701	3.34994255244431	1.20416374051516	0.0815920553066532	0.309972772980659
Merged-chr2-142900591-4	chr2	142900496	142900696	+	936.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 1 of 26)	intron (NM_001355123, intron 1 of 26)	868.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	4.9946922203996	4.45751623519534	5.20889460709885	5.57347535065126	4.82913219500286	4.79103771533785	4.71669875280627	4.56284842037078	-0.803037359346363	0.0442205147977544	0.214470702016173
Merged-chr13-93013174-4	chr13	93013076	93013276	+	835.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60128.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	3.43726772808452	3.56182486826623	3.99753947904415	4.01447598013989	4.03815938348839	3.97447428923056	3.78574617822311	4.16482331191487	0.577739169419392	0.244571884389177	0.5557618752544
Merged-chr7-62400342-1	chr7	62400242	62400442	+	944.0	f0_balb.idr	Intergenic	Intergenic	19797.0	NM_011746	22652.0	Mm.146	NM_011746	ENSMUSG00000070527	Mkrn3	D7H15S9-1|Zfp127	makorin, ring finger protein, 3	protein-coding	3.73550200432008	3.27742555365591	3.35056406180993	3.70220108154674	2.91932100913331	3.1452575285583	3.09377449907172	3.29125309217915	-1.62187307262683	0.00655632853140236	0.0579501935349173
Merged-chr5-64806305-4	chr5	64806194	64806394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	2771.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	7.26827006386713	7.30787341188731	7.30077581390115	7.63004385692906	6.97028528292159	7.2159283848748	6.99032608646724	7.08325100813012	-0.455105762849339	0.0203048638554959	0.129285258464115
Merged-chr13-89339995-4	chr13	89339890	89340090	+	942.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-200646.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	5.02102264717792	4.75608571641649	5.31863839858815	5.24481331996049	6.00388068347651	5.46774733047559	6.40661679468356	6.37955819742937	1.676797428031	5.12572215132241e-07	1.89726353098792e-05
Merged-chr7-132387760-4	chr7	132387662	132387862	+	856.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	-70534.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	3.91162906551268	3.8439351437487	3.70247649340793	3.99180658584026	3.97775196014019	3.7615251665727	3.98788549598959	3.90989726785845	0.110382158747235	0.802558267247953	0.923936032101707
Merged-chr13-108316864-3	chr13	108316781	108316981	+	704.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178683, intron 1 of 10)	intron (NM_178683, intron 1 of 10)	544.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	3.53432878655654	3.51099925331692	3.696331268526	3.81559956439108	3.53854699403197	3.59092801010598	3.73009788585885	3.74372811253135	-0.0196726884163953	0.96748074707061	0.988536511573071
Merged-chr8-86888083-4	chr8	86887974	86888174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2816.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	8.36048513212708	8.56131158958597	7.97471404074551	7.8662695445709	8.27897444376464	8.22142824138819	8.1915043459719	7.80279684996479	-0.101992543757503	0.633493213579765	0.844677396350788
Merged-chr6-124812932-2	chr6	124812832	124813032	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009415, intron 1 of 6)	intron (NM_009415, intron 1 of 6)	1364.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	3.08465142513876	2.97801139357395	3.08505445221767	2.79835676136696	3.181062471031	3.00444743047121	2.95222956918373	3.2479822957939	0.510087735230949	0.383734616809165	0.685515575911105
Merged-chr15-25267169-4	chr15	25267058	25267258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146606.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	6.23638259178339	6.05559648303219	6.45515708202291	6.7305492642325	5.72197080271544	5.66955004598452	5.92066216179658	5.57751510170369	-1.06396515350196	9.00229885734499e-05	0.00185893423373066
Merged-chr3-96221526-4	chr3	96221432	96221632	+	993.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175662)	promoter-TSS (NM_175662)	460.0	NM_178214	319190.0	Mm.439791	NM_178214	ENSMUSG00000068854	Hist2h2be	AV127319|H2b-613|T25626	histone cluster 2, H2be	protein-coding	4.51582670306413	4.71006959719274	4.3744767180266	4.38646819434485	4.97630139114889	5.13667134396973	4.81026717942695	4.83044855306414	0.938253893070085	0.00634673729798899	0.0565187556779129
Merged-chr18-31802851-3	chr18	31802757	31802957	+	765.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1200.0	NM_028866	74320.0	Mm.277705	NM_028866	ENSMUSG00000024400	Wdr33	1110001N06Rik|2310011G05Rik|2810021O11Rik|8430413N20Rik|WDC146	WD repeat domain 33	protein-coding	3.08993290489605	3.35288472075842	3.09031215424242	3.19400931707051	2.79414851080198	3.20091557961089	3.19463149076437	3.08877832110303	-0.458274500391343	0.440072110182334	0.727565854427528
Merged-chr9-56937398-4	chr9	56937284	56937484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133976)	promoter-TSS (NM_133976)	-116.0	NM_133976	102462.0	Mm.12864	NM_133976	ENSMUSG00000032288	Imp3	1190002L16Rik|AI256594	IMP3, U3 small nucleolar ribonucleoprotein	protein-coding	6.76465742452971	6.89806308904836	6.64355242815889	6.7253231964426	6.98634438279284	7.2269197831059	6.67202881386443	6.83179850419381	0.257854420763865	0.226043420306747	0.534611308803241
Merged-chr14-78668516-4	chr14	78668413	78668613	+	900.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081336, intron 2 of 29)	intron (NM_001081336, intron 2 of 29)	-24062.0	NR_104044	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	4.02034066545246	3.81975742226322	4.3967584557479	4.31995196301837	4.02974018502258	3.74604997111315	4.09653327438119	3.96905630260719	-0.514473205255521	0.25624208879624	0.567812876264657
Merged-chr4-53440869-3	chr4	53440774	53440974	+	981.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133891, intron 1 of 15)	CpG	461.0	NM_133891	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	4.74451324184249	4.17331221506459	4.03443657097608	4.24979658244753	4.05586531756256	4.31104929765032	3.9646824649529	4.31528227940991	-0.388759226255259	0.372654534342573	0.676386604956396
Merged-chr16-5444940-4	chr16	5444851	5445051	+	893.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-188995.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	5.62010973695123	5.30975882828876	5.0748489268337	5.54109138025588	4.75100304414068	4.64949471959759	4.33627407730743	4.55907390578058	-1.626869506409	4.62777909833322e-06	0.000138520054011884
Merged-chr13-23464650-3	chr13	23464466	23464666	+	733.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013483, exon 3 of 8)	exon (NM_013483, exon 3 of 8)	1335.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	3.13866011302038	3.01977859067086	3.13911052125988	2.87721075079703	2.91022130109655	2.80209752994839	2.83018793849657	3.02564376243281	-0.628885701242989	0.302569488230977	0.615043376360917
Merged-chr18-53745144-4	chr18	53745048	53745248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178686)	promoter-TSS (NM_178686)	-601.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	8.0429142291042	8.03919558411538	7.79642773481074	7.87924674117774	8.12847961226278	8.27998514684554	8.21205670629469	8.19405819931813	0.334614788361837	0.0358444461664459	0.188043325006003
Merged-chr13-52016707-2	chr13	52016607	52016807	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-80034.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	3.3358045314854	3.4530981412613	3.50092014739234	3.06039871523192	3.35675602995733	3.4506397948956	3.32371367554075	3.49885958197134	0.251282107284104	0.638987201798606	0.847417204773176
Merged-chr16-90712502-4	chr16	90712368	90712568	+	921.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14903.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	4.36594879458781	4.50555260303025	4.45295749989686	4.85209239876225	4.34959583997911	4.35213671364829	4.34737454181138	4.40775611774031	-0.496967596267091	0.197827670965063	0.499140586391181
Merged-chr4-41761026-2	chr4	41760926	41761126	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163401, intron 1 of 12)	intron (NM_001163401, intron 1 of 12)	583.0	NM_001172054	16157.0	Mm.193451	NM_010549	ENSMUSG00000073889	Il11ra1	AI314697|GP130|Il-11ra|Il11ra|Il11ra2|NR1	interleukin 11 receptor, alpha chain 1	protein-coding	3.42435176250518	3.19767414215609	3.82584424236842	3.24216379859287	3.52570656941446	3.48034914780302	3.52297595474243	3.73448491742857	0.434461949175814	0.416638964450817	0.710633736953261
Merged-chr19-21777274-4	chr19	21777191	21777391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1049.0	NM_001033759	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	6.62905021475125	6.6035154246513	6.96705226259931	7.36290250508103	6.38336174168657	6.90021604120898	6.82961656651281	6.73332468981111	-0.317047884699882	0.222200993242753	0.530223758692076
Merged-chr2-12934118-4	chr2	12934010	12934210	+	960.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008961, intron 1 of 4)	intron (NM_008961, intron 1 of 4)	10069.0	NM_001305437	19212.0	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	4.85582147853905	4.97628624208147	4.93655891455219	5.25001133679533	5.4410165385752	5.03672802661643	5.53839854043924	5.56288558669061	0.69503182882278	0.030550506831614	0.16926555038277
Merged-chr16-91379208-4	chr16	91379167	91379367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	6484.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	4.55845290184925	4.50355220147327	5.16280509300667	4.80528550888618	4.59490708104086	4.1985545523096	4.36545658220571	4.33465608884842	-0.865092536814439	0.0307528240554722	0.170081994051628
Merged-chr4-114934286-4	chr4	114934161	114934361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-8248.0	NM_015758	30923.0	Mm.377122	NM_015758	ENSMUSG00000044518	Foxe3	FREAC8|dyl|rct	forkhead box E3	protein-coding	5.98496872600899	6.00292854403347	6.07839484131728	6.39997051461603	6.39747191634841	6.44104800625111	6.53686361856649	6.79868764640481	0.597192956955826	0.0148901248208505	0.10427628833366
Merged-chr6-122969311-1	chr6	122969211	122969411	+	552.0	f0_balb.idr	intron (NM_153197, intron 5 of 5)	intron (NM_153197, intron 5 of 5)	16667.0	NM_153197	73149.0	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	2.76336811146784	2.61005347172916	2.64705401036563	2.93537932325712	2.34221621969459	2.31665637525806	2.44273118049677	2.51752816709942	-2.04837881469266	0.00847070185420788	0.0699137392486854
Merged-chr16-33381340-3	chr16	33381243	33381443	+	970.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358570)	promoter-TSS (NM_001358570)	41.0	NM_001358570	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	3.80017442199747	3.78397624781564	3.94530435684373	3.77297543541051	3.69036168889083	4.11313985647055	3.50495523998477	3.74654757616935	-0.134821542346578	0.775711937475675	0.912468807284313
Merged-chr9-66974974-4	chr9	66974885	66975085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030717, intron 1 of 5)	CpG	499.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	7.24675777642514	7.20339244389858	6.89240259799436	7.07430093857275	7.07879828794147	6.77943643294487	7.15924614357864	6.81711772308511	-0.187076917575692	0.361213348755749	0.666549268946814
Merged-chr15-101145636-4	chr15	101145498	101145698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001277259)	TTS (NM_001277259)	17076.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	6.89582476022088	6.80544985922849	6.87012917210873	6.99696247275592	7.04669971363617	6.65284949189047	7.25646064759226	6.75155077116664	0.0789676557822392	0.716092482310814	0.88640152337098
Merged-chr2-101779227-4	chr2	101779127	101779327	+	989.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	18480.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	5.25428856550558	4.89570637545709	5.22434031092707	5.48549439228806	4.93687072987814	4.96371236839552	5.54763405265929	5.44841275968978	0.0109618420839853	0.974543603999685	0.990926408960312
Merged-chr10-88441414-4	chr10	88441310	88441510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 19 of 20)	L1MB5|LINE|L1	-18177.0	NM_011517	20962.0	Mm.297977	NM_011517	ENSMUSG00000020059	Sycp3	Cor1|Scp3	synaptonemal complex protein 3	protein-coding	7.7375097156114	8.13837944264202	8.22036215888637	8.0065912123553	8.12904283102177	8.19371782859457	7.89462987548695	7.96980268687901	0.0191428130545369	0.915313252725435	0.968584873774714
Merged-chr5-113636494-4	chr5	113636398	113636598	+	920.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	7105.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	3.99337766860719	4.09645415878452	4.18830456202024	4.20293991664893	4.43044169249489	4.44439128115356	4.07737634514098	3.8826927235999	0.271825599253425	0.523243186266724	0.782449675195448
Merged-chr10-82048176-4	chr10	82048095	82048295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001319203)	promoter-TSS (NM_001319203)	68.0	NM_001024626	408062.0	Mm.391409	NM_001024626	ENSMUSG00000061371	Zfp873	-	zinc finger protein 873	protein-coding	5.51641998288067	5.55329087225551	5.95854911813093	5.89262750575249	5.59062848261911	5.63533730934754	5.77524851231427	5.95428512011628	-0.0190435988822787	0.944856387576631	0.980163337636506
Merged-chr2-118746254-5	chr2	118746194	118746394	+	748.659973	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001301269, exon 1 of 1)	exon (NM_001301269, exon 1 of 1)	536.0	NM_001301269	100043272.0	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik	InaF motif containing 2	protein-coding	2.91202669932196	2.70400651127948	2.77560446379001	2.98883865056464	2.9171788415639	3.206279829986	3.02480063914047	3.30022658345062	1.06773636526953	0.0855886544146805	0.318691924700907
Merged-chr1-64246742-3	chr1	64246644	64246844	+	637.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125355.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	3.36561485454598	3.46573198896769	3.52058888949134	3.23873761833136	3.44340487066332	3.16608854663012	3.23970618166043	3.24944868911041	-0.392756051760916	0.467479945324748	0.747012132863453
Merged-chr15-31467027-4	chr15	31466936	31467136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 23 of 25)	intron (NM_172606, intron 23 of 25)	-13347.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	6.06165033764192	6.12332348475411	6.37988647010247	6.26333397538492	6.0557830552404	5.93035412780459	6.1134459853411	5.92431685373863	-0.315306969310489	0.180340784345538	0.476678550593452
Merged-chr3-94786551-4	chr3	94786463	94786663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037711)	promoter-TSS (NM_001037711)	-48.0	NM_001037711	70737.0	Mm.87634	NM_001037711	ENSMUSG00000068876	Cgn	6330408J11Rik	cingulin	protein-coding	5.70614432590945	5.32120983928808	5.63331716245782	5.60859029003213	5.24956892374933	5.72925702647886	5.57937159107953	5.65440211533011	-0.035596315020362	0.900845252338327	0.963265130981544
Merged-chr4-137844861-3	chr4	137844799	137844999	+	822.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17338.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	3.38372390153447	3.31128023385995	3.32763779900036	3.27763056000917	3.46091383976478	3.44051861323744	3.4757486351161	3.20516328368477	0.285570977850728	0.577613780144304	0.814186412200554
Merged-chr4-6357587-4	chr4	6357474	6357674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8106.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	7.23577219637315	7.54333101643657	7.27007521722331	7.35265935894514	7.46621968165648	7.46879106188307	7.56501086775536	7.15133448562894	0.0865974001094412	0.648944576700332	0.852504033090691
Merged-chr17-24719985-4	chr17	24719875	24720075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008503)	promoter-TSS (NM_008503)	-10.0	NR_027900	73474.0	Mm.443320	NR_027900	ENSMUSG00000090101	Snhg9	1700072N11Rik	small nucleolar RNA host gene 9	ncRNA	8.02323136368884	8.54077960830373	7.5269335605356	7.49311072587873	8.24218876078851	8.55762199455749	8.28873652723532	7.91394365941863	0.383694695016729	0.140596182428267	0.417020460987187
Merged-chr9-40325829-4	chr9	40325715	40325915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	-4492.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	5.4557299043118	5.32577993488017	5.58795895390019	5.89656503132031	5.29681104577706	5.09605886618076	5.04774471212763	5.50696039543849	-0.615287819223963	0.0495942247094573	0.230617842855848
Merged-chr7-101060708-4	chr7	101060628	101060828	+	943.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-48047.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	4.70286831352392	4.69778028537199	5.15845928861681	4.90452882212372	4.64825616318504	4.47619105654447	4.71983465744809	4.70055681905246	-0.499031929269729	0.155159720591069	0.440759618148689
Merged-chr10-96464808-4	chr10	96464663	96464863	+	715.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-152238.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	3.79935939314657	3.83277795780806	4.03834897206353	4.21923198335562	3.87124395760515	3.55573835413651	3.78471839508719	3.84907443624725	-0.627405565799305	0.181778957713046	0.478446672285694
Merged-chr12-78919502-4	chr12	78919405	78919605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12567.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	5.77147167425976	5.87172316491458	5.56202129002399	5.57869373141355	5.81667158368827	5.76685395871408	5.83601139612415	5.96942262913106	0.251600608572958	0.324130449799981	0.635660043706099
Merged-chr19-4216204-4	chr19	4216094	4216294	+	849.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310038, intron 2 of 3)	intron (NM_001310038, intron 2 of 3)	1805.0	NM_001310039	56708.0	Mm.347919	NM_019952	ENSMUSG00000040663	Clcf1	BSF-3|Bsf3|CLC|NNT-1	cardiotrophin-like cytokine factor 1	protein-coding	4.42293194237156	3.9381024097715	3.90980007202349	4.07610743800665	4.02098562367849	3.73526240639703	3.9450455376567	4.23166459899819	-0.271044674491014	0.548185535435405	0.797241506537612
Merged-chr6-50545683-7	chr6	50545595	50545795	+	986.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20779.0	NM_007808	13063.0	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	4.69559266966105	4.62897561486956	4.87786066469262	4.76356851979699	4.73764354141782	4.86913964618295	4.67449288796838	4.65371670669447	-0.0198973474580485	0.95268374106317	0.983253719298428
Merged-chr15-6569319-4	chr15	6569199	6569399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10548.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	8.20057085562011	8.28267550185737	8.30903908034855	7.78302328578954	8.20720899403326	8.28161260984076	7.9454887150554	8.0663299245014	-0.0252649688347421	0.894123257695543	0.960481560907683
Merged-chr7-19817624-4	chr7	19817536	19817736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033601, intron 2 of 8)	intron (NM_033601, intron 2 of 8)	5119.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	7.31223960748572	7.34733083115533	7.48845009808762	6.97266067581017	7.50940425281859	7.39316971741813	7.30786079063538	7.42766414961039	0.181255452470668	0.358820793335568	0.664774807478166
Merged-chr10-54059251-4	chr10	54059108	54059308	+	627.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	16588.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	3.04948262664963	3.00160419312257	3.37655260611142	2.74679809013004	3.31383445671793	2.9586577193822	2.97635099888962	3.16648854425409	0.239663142346439	0.701364768877768	0.87967443506783
Merged-chr1-51792716-2	chr1	51792616	51792816	+	659.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010863, intron 13 of 29)	intron (NM_010863, intron 13 of 29)	123262.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	2.86546260662813	3.06831101411168	3.2409766457211	2.74926859155092	3.16358640068232	3.11407972077476	3.37893407872165	3.18362660809585	0.914650277019213	0.123491833641042	0.389715150819585
Merged-chr2-144714783-4	chr2	144714669	144714869	+	937.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025314, intron 4 of 5)	RMER13B|LTR|ERVK	-108897.0	NM_025490	66328.0	Mm.45377	NM_025490	ENSMUSG00000027431	Scp2d1	1700010M22Rik	SCP2 sterol-binding domain containing 1	protein-coding	4.68171736508322	5.01128863616172	4.34599103737895	4.77518270664402	4.52135480694222	4.52326638970859	4.37393204683273	4.39046763883746	-0.609431425132875	0.107463483342686	0.361586507303432
Merged-chr2-145866833-3	chr2	145866742	145866942	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 9 of 12)	intron (NM_028724, intron 9 of 12)	-36399.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	4.61266620451887	4.67226782775004	5.23242297249103	4.97194454043968	3.89271200197458	4.52915824956898	4.50985734806888	4.29606840226839	-1.28750264692008	0.00202378117893339	0.0235993972043413
Merged-chr19-55254680-4	chr19	55254573	55254773	+	855.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027976, intron 1 of 21)	intron (NM_027976, intron 1 of 21)	1304.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	4.08563637633414	4.04940895007781	4.13429017772261	3.73006047015859	4.31105450403561	4.35262540405239	4.33029198397583	4.22266224030175	0.809674834462832	0.0482513448708252	0.226698513304321
Merged-chr11-8580017-4	chr11	8579910	8580110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	84525.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	6.93042666208177	7.24704610393904	7.13595009627986	7.03301913570326	6.96736671516533	7.30109514961406	6.65337382815535	6.23149038699325	-0.337425168963928	0.192420075220892	0.492034363204047
Merged-chr8-122264458-4	chr8	122264342	122264542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17699.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	6.60276762879515	6.55234669076653	6.66329344544253	6.36609012963826	6.29159423487947	6.60062351924267	6.30127755641659	6.41992323604265	-0.200674951016121	0.3650542138305	0.669759676062152
Merged-chr12-80083366-4	chr12	80083260	80083460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29653.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	5.39022395289146	5.4129319729928	5.53069482575687	5.77329201271644	5.22214105957322	5.23580777683875	5.50285409153513	5.5001292446175	-0.324973389755381	0.265389348374026	0.577001515467012
Merged-chr7-48928608-4	chr7	48928536	48928736	+	909.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30437.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	4.10690672863537	4.23019550368767	4.6063667341539	4.04936096394083	4.07455920340508	4.55193785371038	4.40090824188246	4.1050859054995	0.0866854123310057	0.839110634937884	0.938883217546863
Merged-chr5-53385709-4	chr5	53385582	53385782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	118576.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	5.73651506774265	6.04529990931488	5.8396277942257	6.22250049215373	6.22125216275513	6.4650183365804	6.07668473965769	5.88402331903244	0.290140972348645	0.277608281606494	0.589700641340894
Merged-chr16-10784654-3	chr16	10784575	10784775	+	920.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271603, exon 2 of 2)	exon (NM_001271603, exon 2 of 2)	861.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	3.82468675468342	3.97279069389562	4.02065728705904	3.86083204223552	4.01460064336217	3.58039022784163	3.75666096998802	4.22598444053572	0.0104916392376433	0.981998733360474	0.993573193675204
Merged-chr11-89031365-4	chr11	89031265	89031465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29383.0	NM_019505	56077.0	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	5.70927899249629	5.78920036472905	5.98997882703973	5.89999364813604	6.29266324857581	6.53789279988301	6.51850269948329	6.45665541240777	0.906340628631169	9.29269356027213e-05	0.00191058531174642
Merged-chr8-3515430-4	chr8	3515320	3515520	+	971.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015801)	promoter-TSS (NM_015801)	36.0	NM_015801	50767.0	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	4.8344318469526	4.75549216646082	4.94370357032537	5.06973796019125	4.9319808599709	4.67324590559659	5.13984458820967	5.04017762348828	0.0812467913004997	0.806919720818472	0.925565567068015
Merged-chr2-28641118-7	chr2	28641025	28641225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022887)	promoter-TSS (NM_022887)	-108.0	NM_001289575	64930.0	Mm.224354	NM_022887	ENSMUSG00000026812	Tsc1	-	tuberous sclerosis 1	protein-coding	4.95725305165102	5.02826016578615	5.12562074980994	4.64198320272138	5.1191360143821	5.3583782884493	4.74329317739851	5.1832681635811	0.354921324802821	0.297815793849922	0.609987985766329
Merged-chr6-116131937-4	chr6	116131831	116132031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	MIR|SINE|MIR	61443.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	7.12170437579293	7.20543528090958	7.07668372883603	6.91118782102873	6.99760175529371	7.12972824017113	6.62767973599719	7.01139562511525	-0.168004301434011	0.416744372389075	0.710662693395928
Merged-chr11-24049435-4	chr11	24049335	24049535	+	746.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28621.0	NM_016707	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	3.52487403012393	3.81590108547839	4.07026804734576	3.82025294464039	3.69726629298311	4.44222499245968	3.75547247884282	4.15371531217936	0.602502037433882	0.226153204088527	0.534707155416617
Merged-chr7-80455882-6	chr7	80455804	80456004	+	796.622192	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042527, intron 21 of 21)	intron (NM_001042527, intron 21 of 21)	-50468.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	3.40315762690631	3.60198604379222	3.67006010925257	3.08325750018603	3.58826846100541	3.39504909770277	3.13437856456184	3.84660869158917	0.206058721739247	0.722319446130526	0.889145957666795
Merged-chr8-104375435-4	chr8	104375333	104375533	+	978.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	intron (NM_153582, intron 1 of 3)	20374.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	5.31921208057882	4.8653843575914	5.37819146315448	5.82175413134685	5.09327779313605	5.19863621257394	5.3790780069123	5.28639423895828	-0.306876118739488	0.373456353426376	0.677099512991569
Merged-chr1-106345439-4	chr1	106345325	106345525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 8 of 16)	intron (NM_133821, intron 8 of 16)	173556.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	6.57576312375983	6.99014103255268	6.83308224323335	7.43752019054175	7.23217741303194	7.10799866552456	7.03456900739075	7.35329147684857	0.232353687875132	0.338515055178945	0.648064797414472
Merged-chr18-65684032-4	chr18	65683933	65684133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 7 of 8)	intron (NM_001361052, intron 7 of 8)	-14235.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	8.39525588983225	8.76182893474995	8.68836834754192	8.47970199993066	8.42515395262436	8.22827784446365	8.34691522880272	8.3751441995634	-0.302750599638558	0.0630449885018703	0.266319242526684
Merged-chr1-140268543-3	chr1	140268427	140268627	+	710.366638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081027, intron 1 of 27)	intron (NM_001081027, intron 1 of 27)	22270.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	3.78119409906694	3.49367782665006	4.09615106360349	4.10910404299451	3.58361862736046	3.79424500789187	3.66120215010619	3.61711078991368	-0.710023739041416	0.153040725455168	0.437555330104179
Merged-chr5-142818928-4	chr5	142818816	142819016	+	912.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1529.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	4.41831626770345	4.48259250019172	4.2329916290099	4.33312407210841	4.48510110668306	4.54878431389958	4.59713659701211	4.65240974007464	0.456656912458918	0.205280406553654	0.508859472252119
Merged-chr1-150165846-4	chr1	150165742	150165942	+	952.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110420)	promoter-TSS (NR_110420)	-894.0	NR_110420	102639566.0	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	4.39761853616392	4.4140304695216	4.51468616711937	4.35214965837771	4.28571610762579	4.09158388343109	3.95265641854199	4.35423666418655	-0.561268323368543	0.159386306068864	0.446898206872909
Merged-chr6-72349813-4	chr6	72349730	72349930	+	934.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026696, exon 4 of 4)	3' UTR (NM_026696, exon 4 of 4)	2513.0	NM_026696	68364.0	Mm.52711	NM_026696	ENSMUSG00000058706	0610030E20Rik	1500031N04Rik|2810411C16Rik|AI461894	RIKEN cDNA 0610030E20 gene	protein-coding	4.81383640842832	4.80547811131008	5.03943681721874	4.83188478759335	4.01614030366225	4.5357424957065	4.64359170422294	4.77575373412238	-0.780212036606376	0.0454343394487495	0.218325188245342
Merged-chr4-62282675-2	chr4	62282586	62282786	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-3743.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	5.39559092416811	5.59854285087562	5.89962331906326	5.28465814020885	5.94013638458839	6.19732375826638	5.95334391117455	5.68167351115523	0.663483938494052	0.0201115823186097	0.128541207919605
Merged-chr8-40311302-4	chr8	40311192	40311392	+	887.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030110, intron 1 of 14)	ORR1E|LTR|ERVL-MaLR	3241.0	NM_030110	78506.0	Mm.169893	NM_030110	ENSMUSG00000039478	Micu3	2900075B16Rik|Efha2	mitochondrial calcium uptake family, member 3	protein-coding	4.08416429641556	4.19518882120217	4.50420656741305	4.08569909962434	4.63749772006841	4.46414941558896	4.91227389460799	4.33140502653983	0.897790504067293	0.0234827185940708	0.142277530371754
Merged-chr16-57121623-5	chr16	57121489	57121689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138599)	promoter-TSS (NM_138599)	-125.0	NM_138599	28185.0	Mm.196933	NM_138599	ENSMUSG00000022752	Tomm70a	2610044B22Rik|D16Ium22|D16Ium22e|D16Wsu109e|Tom70|Tomm70|mKIAA0719	translocase of outer mitochondrial membrane 70A	protein-coding	7.51501270923408	7.57236134900345	8.15462010126222	7.52854921179312	7.42250102680056	7.63641578135008	7.55175383272431	7.67738269263571	-0.189671896919686	0.367087977814382	0.671471106644306
Merged-chr9-32676295-3	chr9	32676187	32676387	+	674.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19755.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	4.09411941875632	3.95585504969479	3.87144374291494	3.67471503771322	3.86939475505091	3.77787576971265	3.701352723866	3.65760189009164	-0.401890333939647	0.387912835477567	0.688726934413767
Merged-chr12-104418637-4	chr12	104418517	104418717	+	828.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11909.0	NM_009252	20716.0	Mm.482074	NM_009252	ENSMUSG00000021091	Serpina3n	Spi2-2|Spi2.2|Spi2/eb.4	serine (or cysteine) peptidase inhibitor, clade A, member 3N	protein-coding	3.6231340074001	3.44845978038994	3.56795035717693	3.80416528929414	3.80712769416158	3.56264601657038	3.93814579539924	3.77561018875452	0.455188401302572	0.347619313998805	0.655546119710951
Merged-chr10-127289956-4	chr10	127289840	127290040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033072)	promoter-TSS (NM_033072)	-853.0	NM_007837	13198.0	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	6.32937173783119	6.27675582612072	6.27176926279459	6.72697717723753	6.77588249666631	6.2337289931998	6.81984514182078	6.74484149221566	0.341820134967279	0.170618840105831	0.463848385146013
Merged-chr6-113469282-4	chr6	113469181	113469381	+	942.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145826, intron 14 of 14)	intron (NM_145826, intron 14 of 14)	-2174.0	NM_178942	171095.0	Mm.213397	NM_134159	ENSMUSG00000030281	Il17rc	1110025H02Rik|Gm19850|IL-17RC|IL17-RC|IL17-RL|Il17rl	interleukin 17 receptor C	protein-coding	5.13257506272134	4.95011417708181	4.87608640470662	4.98435878100072	4.7977019473511	4.8596721652951	4.70278165269815	4.5952537546239	-0.497018861746335	0.129987437679762	0.401334945198567
Merged-chr18-4031157-4	chr18	4030989	4031189	+	925.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-134743.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	3.56117141969225	3.62636407511279	3.4413978604101	3.73226842184728	3.85020655081867	3.89243072018144	3.80451965450791	3.5597784406888	0.537477899912405	0.261046766686489	0.572958612580253
Merged-chr16-57216213-4	chr16	57216136	57216336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 2 of 17)	intron (NM_026254, intron 2 of 17)	-14765.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	7.39651837572286	7.4231594516346	7.1388572012997	7.6328257951646	7.32668964561511	7.32747442728396	7.42744536338976	7.19213058781276	-0.136297379965622	0.482011103367459	0.756947271620127
Merged-chr4-121098122-4	chr4	121098027	121098227	+	939.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172700, exon 1 of 10)	5' UTR (NM_172700, exon 1 of 10)	116.0	NM_172700	230709.0	Mm.34399	NM_172700	ENSMUSG00000043207	Zmpste24	A530043O15Rik|D030046F19|FACE1|Face-1|MADB|STE24|Ste24p	zinc metallopeptidase, STE24	protein-coding	4.59593778473721	4.49652696432398	4.51758208267106	4.07438994114441	4.49820238511318	4.64941635684206	4.4132067530033	4.70359231672357	0.34282821925343	0.376090812265676	0.678936009694858
Merged-chr9-44444622-4	chr9	44444511	44444711	+	909.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-3743.0	NM_001033469	382074.0	Mm.335103	NM_001033469	ENSMUSG00000074397	Foxr1	Foxn5|Gm1115	forkhead box R1	protein-coding	4.77551099746681	4.6842302193499	4.45638410690057	3.99475413893527	4.81585013654294	5.04841787281504	4.7174443231232	4.40749275447902	0.576012529021694	0.163639787214245	0.453394955785238
Merged-chr3-10009589-4	chr3	10009493	10009693	+	996.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2992.0	NM_001272097	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	5.20219082234086	5.02081633992621	4.93336431675721	5.10022501976656	5.3521719796504	5.14554050161599	5.05074200397462	5.10502373897908	0.203925947920064	0.503005826461561	0.770099193876526
Merged-chr19-34520382-4	chr19	34520280	34520480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	7094.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	5.98968802002135	6.37223655817228	6.28750157745294	6.50365412768871	6.55394735896525	6.32476272074139	6.21717815202251	6.47522592438665	0.130946325912236	0.583987715073955	0.817485282428486
Merged-chr12-24675553-3	chr12	24675425	24675625	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004455, intron 1 of 4)	intron (NM_001004455, intron 1 of 4)	6270.0	NM_138686	12879.0	Mm.52265	NM_138686	ENSMUSG00000062563	Cys1	2900006B19Rik|AV218859|Ccap|ck|cpk	cystin 1	protein-coding	3.36215129551799	3.51819794996481	3.17646211795315	3.30695415445109	3.4387339410185	3.47613094804189	3.51073376558305	3.47144643864047	0.437617194518501	0.388735641044884	0.689075530869355
Merged-chr15-36763896-3	chr15	36763796	36763996	+	879.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	27036.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	3.06851092357254	3.26151409481167	3.20367647204829	3.16373468997868	3.63556964795668	3.37985829164474	3.62016943449153	3.53930413003922	1.31177511054003	0.0111145899541599	0.085076395133579
Merged-chr6-93127618-4	chr6	93127518	93127718	+	959.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187036.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	6.88960034872746	6.90802587031502	7.32883500779368	7.25802185785468	5.66524184722421	5.25356106279342	5.40128920387374	5.69069729663584	-2.41350038688624	8.81547584625483e-20	2.83926133602069e-17
Merged-chr2-136921147-4	chr2	136921051	136921251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	21800.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	5.91238998658036	6.00955513145862	6.27568731930063	6.41032996450112	5.4545278110954	6.06657110636524	6.19012627109896	5.73474005392904	-0.462921390136844	0.108287513914194	0.363192408916317
Merged-chr19-8252215-4	chr19	8252094	8252294	+	909.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-33294.0	NM_001347426	236293.0	Mm.440581	NM_172776	ENSMUSG00000075044	Slc22a29	D630002G06Rik	solute carrier family 22. member 29	protein-coding	4.48908921381041	4.64273936951717	4.57395008448044	4.28729540427721	4.56861368438087	4.38167243819153	4.77411527464074	5.01250753335692	0.459703067037247	0.222819260341255	0.530983202865467
Merged-chr17-6430113-4	chr17	6430012	6430212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009342)	promoter-TSS (NM_009342)	0.0	NM_009342	21648.0	Mm.1948	NM_009342	ENSMUSG00000096255	Dynlt1b	AGS2|Dynlt1|Tctex-1|Tctex1	dynein light chain Tctex-type 1B	protein-coding	8.56744661248758	8.44261423985911	7.93272895762637	7.97859656697218	7.65378521731362	7.63349909713128	7.70384762328987	7.6419660438106	-0.773143984343175	0.000130923323436858	0.00254617246964812
Merged-chr13-102665924-3	chr13	102665756	102665956	+	858.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27691.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	3.57472142995517	3.34844627457831	3.57522820827677	3.61260404619388	3.54004437373821	3.46814214223032	3.34438589903427	3.35440017914601	-0.343863156259068	0.497630960296154	0.767150526789395
Merged-chr1-161999543-4	chr1	161999454	161999654	+	892.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038619, intron 20 of 20)	intron (NM_001038619, intron 20 of 20)	-5415.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	3.96886556882073	3.9459242181872	4.24057853423232	4.02108040725858	4.09817916634795	3.98562525710818	4.09413351911106	4.01643757768764	0.0183254235451078	0.964766547194482	0.987505292820766
Merged-chr8-26887127-7	chr8	26887045	26887245	+	966.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-62722.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	4.42133657794734	3.68060201133677	4.08123389999698	4.07629844690146	4.26493745483946	4.25491941921785	4.11117104226393	4.26034769253413	0.351574781643601	0.419044775321953	0.712251159515261
Merged-chr2-8674151-3	chr2	8674048	8674248	+	695.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-515367.0	NR_038180	73438.0	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	3.32303492111335	3.32198360813176	3.10036359139929	3.16277763941525	2.99907621021145	3.147406262848	2.89562919815214	3.15825322346036	-0.710141088397618	0.217752714443781	0.524691528498242
Merged-chr4-127045656-4	chr4	127045568	127045768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15486.0	NM_026670	68310.0	Mm.273806	NM_026670	ENSMUSG00000043872	Zmym1	5830412B09Rik|AW209050	zinc finger, MYM domain containing 1	protein-coding	6.13923100175329	6.03786408550938	6.66036803285649	6.38726958866822	6.4884689473916	6.49620312548037	6.41107675766199	6.42248423933921	0.187233005152294	0.430821069575557	0.721309079893587
Merged-chr2-30982097-4	chr2	30981988	30982188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144885)	promoter-TSS (NM_144885)	-147.0	NM_144885	227707.0	Mm.235238	NM_144885	ENSMUSG00000026851	BC005624	-	cDNA sequence BC005624	protein-coding	9.00942977651821	9.22705362182216	8.85709308711816	8.67104782118364	8.99758207873201	9.3695198464352	9.23617383317077	9.02620410464798	0.260185027219838	0.148014784241923	0.429496303610103
Merged-chr1-85109457-2	chr1	85109326	85109526	+	676.416626	f0_balb.idr|f1_balb.idr	5' UTR (NM_213615, exon 1 of 7)	5' UTR (NM_213615, exon 1 of 7)	427.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	2.97006897200493	3.05629413498547	2.74264668229265	2.6858607901574	2.46751328607634	2.57106083248643	2.53397855295053	2.46567665884664	-1.98115595491367	0.00746354822540778	0.0638365656256069
Merged-chr17-35813878-1	chr17	35813778	35813978	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-7835.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	5.00037277964228	4.91851366946781	5.39448440184899	4.90112363317201	4.83509092976384	4.75398773567841	4.72402986344756	4.70213381340244	-0.603185398962211	0.076750724002786	0.299458598770468
Merged-chr10-59748989-1	chr10	59748889	59749089	+	663.0	f0_balb.idr	intron (NM_001359267, intron 4 of 11)	L1MEf|LINE|L1	46426.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	3.05258328644306	2.89332205391232	3.1071775664516	3.12393911466545	2.81278991738278	2.77285270270798	2.86556834600139	2.80860648877963	-1.064863749762	0.0850397384174285	0.317381282160886
Merged-chr4-141161611-4	chr4	141161509	141161709	+	963.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 1 of 9)	intron (NM_172518, intron 1 of 9)	13687.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	4.80521115454411	5.15562784186168	5.69270322862817	5.40821552107003	5.12907822819511	4.80914736035305	5.35426285852996	5.10541856198705	-0.355538471181624	0.311011631994342	0.62308246654072
Merged-chr6-37871492-4	chr6	37871399	37871599	+	974.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145076, intron 1 of 18)	CpG	688.0	NM_145076	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	4.65365661387017	4.18679474954785	4.36364750645374	4.48053758704851	4.81744551370615	4.78783368990645	4.24897190122115	4.68788156422201	0.499782491023805	0.196562228655664	0.49766951412921
Merged-chr4-133465307-4	chr4	133465197	133465397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-14836.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	6.13494828824625	6.28718719164506	5.88735456048871	5.96488498105394	5.92914317214023	5.6665529795044	5.49017993648368	5.68528951232331	-0.579726231262049	0.0294029882636768	0.165053257225572
Merged-chr3-84325193-4	chr3	84325113	84325313	+	785.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-20438.0	NM_001271726	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	3.77280773853633	3.96781683069577	4.30459240372821	4.22124887482259	3.94666509226156	4.06351761501259	4.16136714722944	4.22030667957914	0.0174362349867143	0.968043435209503	0.98865348920078
Merged-chr9-13749157-4	chr9	13749077	13749277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023858)	promoter-TSS (NM_023858)	-4.0	NR_024025	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	7.28848981308986	7.72164371882841	7.43531127442218	7.57453860132671	7.46619089194761	7.66072599914133	7.83230730769684	7.3385830339982	0.0863742527923778	0.664186170009756	0.860892763519835
Merged-chr12-12262766-2	chr12	12262666	12262866	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	627.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	3.21750492727129	3.26246920809234	3.33396165430296	3.30425340788062	3.14250111176925	3.32955233204459	3.26504471321414	3.48839848939836	0.0929142198691739	0.860957498091553	0.947509837448531
Merged-chr19-34340557-4	chr19	34340449	34340649	+	874.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	49890.0	NM_001146708	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	4.21402801284806	4.52759334354226	4.4436327601831	4.20219925192424	4.60205113527649	4.34204498217102	4.61557879638216	4.5606781556079	0.445218411448462	0.234242820859064	0.544053856944459
Merged-chr13-41029497-4	chr13	41029393	41029593	+	917.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145802, intron 11 of 11)	intron (NM_001145802, intron 11 of 11)	13243.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	4.27405741275103	4.17447942035221	3.92891034058127	4.51106991717719	4.50344687126522	4.21276718188907	4.02107064650703	4.22802756157733	0.0165261152457578	0.969623240653731	0.989034602712618
Merged-chr9-90237971-4	chr9	90237854	90238054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	32815.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	7.38017866805302	7.3878934245896	8.19220514239998	8.24417542385956	7.7578083196785	7.53810173087047	8.37115836762395	8.01666865454544	0.110338538296887	0.684790812891478	0.870914954532591
Merged-chr8-125489026-3	chr8	125488918	125489118	+	864.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 3 of 21)	intron (NM_001357372, intron 3 of 21)	3815.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	4.19705306519783	4.47993161554753	4.41326775429919	4.22790472755637	4.01426576689879	4.00433002704968	4.64063733645201	4.04633454080057	-0.311313255823957	0.470880790674024	0.749548792364843
Merged-chr2-152741867-4	chr2	152741760	152741960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5609.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	6.22915487789257	6.36463205165461	6.3630067999711	6.33406420602648	6.48646913870635	6.60803007338859	6.19869258155453	6.60295520686345	0.233935817240068	0.291411162257198	0.60371229002408
Merged-chr4-126046935-4	chr4	126046853	126047053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025544)	promoter-TSS (NM_025544)	25.0	NM_025544	66407.0	Mm.195628	NM_025544	ENSMUSG00000028861	Mrps15	1500003E24Rik|2410002B11Rik|Mprs15	mitochondrial ribosomal protein S15	protein-coding	7.52134211779156	7.61575874897107	7.14187760729053	7.41899157037254	7.1691565056069	7.37798084301915	7.49431709741996	7.24061187631947	-0.155557590961603	0.426517722563754	0.717943860798456
Merged-chr4-97920547-2	chr4	97920447	97920647	+	775.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	142921.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	3.42248574779461	3.19468565942324	3.47595451670862	3.18968192968743	3.01799004117363	3.36374182051004	3.46121135412874	3.57348654242867	0.160228322296574	0.774162259722477	0.911730761342613
Merged-chr10-41605095-4	chr10	41605002	41605202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001358562, exon 29 of 48)	exon (NM_001358562, exon 29 of 48)	37086.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	5.94594838139021	5.77315309607765	6.38173016970933	6.33434471118424	6.17499533405048	6.23591994596752	6.13177938765995	6.27279156502991	0.0909099380624031	0.72215368709039	0.889141811997836
Merged-chr14-45663729-4	chr14	45663600	45663800	+	929.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5557.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	4.40039811486507	4.64851809391731	4.05354684606474	4.09977724481268	5.68563172975887	5.41934202474006	5.07846849994025	4.90599276752395	2.02710027717335	1.75361439170333e-07	7.14894151128589e-06
Merged-chr1-180434317-4	chr1	180434226	180434426	+	786.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081227, exon 4 of 4)	3' UTR (NM_001081227, exon 4 of 4)	49178.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	3.52868594865639	3.45691967733044	3.52914449374703	3.43033597456906	3.70116843750251	3.81216172573438	3.77498853031378	3.88066325730794	0.965412123014421	0.0365482340341028	0.190249140727907
Merged-chr7-120917668-4	chr7	120917562	120917762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025298)	promoter-TSS (NM_025298)	-82.0	NM_025298	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	8.56628645809887	8.55797680141795	8.73477857471282	8.03647138819914	8.36867201911613	8.48075992105903	8.25840777070769	8.27464985364542	-0.1810110965334	0.348868799711649	0.656535237677483
Merged-chr2-145123676-1	chr2	145123576	145123776	+	725.333313	f0_balb.idr	Intergenic	IAPLTR1_Mm|LTR|ERVK	-44099.0	NM_001356497	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	3.76495179782189	4.43656882996472	3.89905297095417	3.52727532576639	3.06469382329183	2.98948622079543	2.94837785558373	2.95513484813718	-4.04096748437724	7.37617372500242e-07	2.64498070313324e-05
Merged-chr16-57501001-4	chr16	57500895	57501095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-48247.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	7.08922366702539	6.86511473752089	7.07892786817638	7.40609088904417	6.79165734996294	6.66134132822241	6.81605732762838	6.78915205720474	-0.51603215014645	0.0151105257150242	0.105404950006832
Merged-chr7-99674430-3	chr7	99674369	99674569	+	938.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175316, intron 7 of 13)	intron (NM_175316, intron 7 of 13)	21340.0	NM_001252531	101488.0	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	3.40575937856543	3.45258711829907	3.23734255737372	3.62013901367265	3.34832219675731	3.22044058487041	2.96455204001697	3.2944463317232	-0.819328280117822	0.150948264824295	0.433957209173573
Merged-chr3-19515713-1	chr3	19515613	19515813	+	552.0	f0_balb.idr	intron (NM_025489, intron 1 of 4)	intron (NM_025489, intron 1 of 4)	7118.0	NM_025489	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	2.6831523140887	2.76938360305722	2.68350744851446	2.70532872454748	2.44869391352141	2.30236658430327	2.35544312754735	2.43073079254615	-1.9595747109692	0.0109559257403076	0.0842542624161684
Merged-chr2-18047999-3	chr2	18047882	18048082	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028317, exon 1 of 1)	exon (NM_028317, exon 1 of 1)	467.0	NM_028317	72668.0	Mm.102183	NM_028317	ENSMUSG00000054074	Skida1	2810030E01Rik|5730507N06Rik|BB088113|DLN-1	SKI/DACH domain containing 1	protein-coding	3.32997834419498	3.70472827203417	3.39484813970294	3.86841795730028	3.57885436429624	3.7950574236662	3.75849041008411	3.51341507958975	0.16873349742905	0.747680200777344	0.90068822490119
Merged-chr11-106788495-4	chr11	106788372	106788572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177088)	promoter-TSS (NM_177088)	22.0	NM_007840	13207.0	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	7.47033356597917	8.09940059340989	7.53847560537459	7.04763895204126	8.00944645709231	8.27643580026508	7.59073465766903	7.44667474489282	0.367542000240034	0.174635854686307	0.469069910997419
Merged-chr1-86437592-4	chr1	86437463	86437663	+	943.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11234.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	4.81656446567919	5.11604860087137	4.70233383195633	4.64508602761888	4.9790392431121	5.09231103718605	4.68074805215564	4.53032196550167	0.0311131619656868	0.931602527213596	0.975349664377662
Merged-chr1-165738087-4	chr1	165737981	165738181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25677.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	5.55971886991017	5.59952205154059	5.39540386420173	5.52854090061655	5.34810035221605	5.31353618464502	5.33919766960471	5.55677878412884	-0.234228459292195	0.393019018610891	0.692266411611797
Merged-chr18-51470985-4	chr18	51470876	51471076	+	890.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	353078.0	NM_001081224	71373.0	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding	3.87494526943466	4.10674345377748	4.07660951236913	4.41939552650695	4.06109820628226	3.8815114467936	3.91300620967916	4.16385390317654	-0.368539660662518	0.406461406274212	0.702950099801707
Merged-chr11-73177713-4	chr11	73177609	73177809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025318)	promoter-TSS (NM_025318)	626.0	NM_029564	76281.0	Mm.371656	NM_029564	ENSMUSG00000040158	Tax1bp3	1300011C24Rik|TIP-1	Tax1 (human T cell leukemia virus type I) binding protein 3	protein-coding	5.79120684824889	5.90688970381776	5.83970692174912	5.67016312984043	5.75595944638171	5.89295202430862	5.96223379980203	5.73886602450189	0.0677185885570309	0.786920611134661	0.917255746826399
Merged-chr10-80676534-4	chr10	80676378	80676578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021462)	promoter-TSS (NM_021462)	-185.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	8.93988038171596	9.1750481484282	8.4390546215735	8.64551036825756	9.08061373369152	9.47422618841176	8.9304730737038	9.08501228567654	0.406263663163962	0.0479749573890757	0.226011615063672
Merged-chr4-108619406-2	chr4	108619306	108619506	+	713.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177045)	promoter-TSS (NM_177045)	-550.0	NM_177045	319965.0	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	2.88145431290365	2.9361570176328	2.94143858352571	2.81667266500151	2.76030248572681	2.85939058308659	2.74532573985836	2.9398784210023	-0.297049665578193	0.626123373112742	0.840281224306947
Merged-chr17-78882567-4	chr17	78882465	78882665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011163)	promoter-TSS (NM_011163)	7.0	NM_011163	19106.0	Mm.378990	NM_011163	ENSMUSG00000024079	Eif2ak2	2310047A08Rik|4732414G15Rik|AI467567|AI747578|Pkr|Prkr|Tik	eukaryotic translation initiation factor 2-alpha kinase 2	protein-coding	6.02357815840502	5.87342362789636	5.71522827316778	6.23659045175074	6.20210880397276	5.77990591583375	6.35519289237337	5.86254080525045	0.136391877899033	0.620827727395235	0.837500887125037
Merged-chr5-8051620-3	chr5	8051525	8051725	+	718.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025618, intron 1 of 7)	ID2|SINE|ID	-4917.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	2.69789159409669	3.10567483343125	3.17433706668431	2.73435796544356	3.05766235311396	3.16722878864886	3.36963162076592	3.33360103262051	1.18507522376655	0.0559876531775249	0.247632210620956
Merged-chr2-181496266-8	chr2	181496168	181496368	+	949.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291201)	promoter-TSS (NM_001291201)	-874.0	NM_001291203	66314.0	Mm.136648	NM_025482	ENSMUSG00000000827	Tpd52l2	2810411G23Rik|AU016537|C86069|D54	tumor protein D52-like 2	protein-coding	3.82707559492503	3.56572955625097	3.56024953771663	3.19780228783259	4.7642375579727	4.77185964251717	4.39320610709387	4.75677097820505	3.13127787460813	2.88944790251922e-12	2.86047304942164e-10
Merged-chr17-17845406-1	chr17	17845306	17845506	+	544.0	f0_c57.idr	intron (NM_008215, intron 4 of 4)	B3|SINE|B2	9782.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	3.40429604702802	3.38526455865415	3.21625379031543	3.14548711018225	3.8799681118316	3.57850709590767	3.60461136837838	3.51499133663988	1.27070431884853	0.0121522950246113	0.0907266842413266
Merged-chr2-71327302-4	chr2	71327198	71327398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 4 of 17)	intron (NM_172436, intron 4 of 17)	40256.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	7.8139906482755	7.9946826490108	7.86039026541287	7.81183462910758	7.8043448469924	7.84682862540541	7.8076150205106	7.87702694304514	-0.0490793503809353	0.759132237699647	0.905467910117288
Merged-chr18-47327217-3	chr18	47327115	47327315	+	800.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311097, intron 1 of 17)	intron (NM_001311097, intron 1 of 17)	41653.0	NM_018744	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	3.74731823782588	3.88856588616142	4.32469207863692	4.15945453510124	3.25604131057705	3.28812269193752	3.37994406923596	3.69249888435507	-2.07109937859932	0.00016191721943032	0.00304735741983891
Merged-chr7-45526944-4	chr7	45526873	45527073	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008654)	promoter-TSS (NM_008654)	643.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	4.62964879533858	4.59113240620117	4.22850137873437	4.10910100510414	4.6984608682565	4.59861453377512	4.78542789131677	4.77205366596098	0.717036167956405	0.0572994219182426	0.250970128159411
Merged-chr7-13054405-4	chr7	13054282	13054482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145819, intron 1 of 5)	CpG	382.0	NM_001290452	109889.0	Mm.10103	NM_145819	ENSMUSG00000030380	Mzf1	Mzf-2|Mzf2|Zfp121|Zfp98|Znf42	myeloid zinc finger 1	protein-coding	6.36310576763513	6.45285411192709	6.34555247420544	6.42399289461336	6.77179943428178	6.57724012448737	6.6116291355149	6.53255147296744	0.340082774438686	0.102836326965487	0.35216269069915
Merged-chr6-15729012-4	chr6	15728902	15729102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	8341.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	6.72683774280139	6.55560484909285	6.82621531232334	6.98809562982281	6.83872921702275	6.61117770303566	6.58772633768215	6.63253533624124	-0.164975292632411	0.445240342905755	0.731320234629947
Merged-chr7-81762903-4	chr7	81762792	81762992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025997)	promoter-TSS (NM_025997)	-61.0	NM_025997	67148.0	Mm.241472	NM_025997	ENSMUSG00000038646	Fam103a1	2410047I02Rik|2610204K14Rik|RAM	family with sequence similarity 103, member A1	protein-coding	6.95919236691923	6.52271276012099	6.32274839967496	6.74911355070015	7.2024066083311	6.65301155032976	6.56108024492974	6.94323427560859	0.29978210262925	0.231169313197473	0.540694024187794
Merged-chr10-43541022-4	chr10	43540935	43541135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026411)	promoter-TSS (NM_026411)	-17.0	NM_026411	67851.0	Mm.209953	NM_026411	ENSMUSG00000019797	1700021F05Rik	-	RIKEN cDNA 1700021F05 gene	protein-coding	7.44764955575973	7.37942469854024	7.51395822710844	7.46674851153492	7.39607755029658	7.28962006361672	7.76564386373537	7.28112891590252	-0.00420240691561985	0.98245969991238	0.993768548367368
Merged-chr15-27625502-4	chr15	27625407	27625607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 1 of 6)	intron (NM_001013792, intron 1 of 6)	5186.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	6.32496689115625	6.09674392074584	6.52072969733996	6.85850793666384	6.3870823405333	6.54073664632979	6.76427972772603	6.57994931501887	0.104578021030988	0.68396034288874	0.870489884572853
Merged-chr11-119086333-4	chr11	119086240	119086440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007625)	promoter-TSS (NM_007625)	-103.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	7.75952520342036	7.85650429098395	7.31729384918422	7.33216329524023	7.94157743763303	7.89061352856713	7.77621245110883	7.65012512735704	0.311300592799451	0.124188545463216	0.391029659273035
Merged-chr15-102987631-3	chr15	102987528	102987728	+	864.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2911.0	NM_010466	15426.0	Mm.6167	NM_010466	ENSMUSG00000001657	Hoxc8	D130011F21Rik|Hox-3.1	homeobox C8	protein-coding	3.19692215137493	3.72150017646726	3.19726270222416	3.53499953746631	3.53767989547874	3.37363987493363	3.36997353700521	3.54247947347732	0.0683680640900662	0.900245160246327	0.963037675111283
Merged-chr1-66817024-4	chr1	66816934	66817134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357156, intron 1 of 14)	CpG	561.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	7.91894152805509	7.72936038472886	7.84647560993687	7.54133122691535	8.06196810205977	8.33828565866903	7.88923968042085	8.28950511986623	0.512736269777555	0.00587479643026346	0.0534460806633081
Merged-chr1-181245203-4	chr1	181245097	181245297	+	903.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33219.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	4.0724563866071	4.75377570312553	4.12756503013742	3.97732746289454	4.61696165343964	5.10440193308769	4.39449837461691	4.07068830456006	0.739275275209789	0.119845753825454	0.383221065208535
Merged-chr9-21367659-4	chr9	21367531	21367731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010561)	promoter-TSS (NM_010561)	-240.0	NM_001042708	16201.0	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	8.10987415043518	8.26170174567239	7.52958425067729	7.70864074677502	8.22170087434285	8.51010227347952	7.68378983998165	7.97523073688139	0.255846863361931	0.284778082757626	0.596568931444025
Merged-chr11-4535674-2	chr11	4535574	4535774	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028860, intron 1 of 17)	intron (NM_028860, intron 1 of 17)	59141.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	3.08264185512781	3.07414393026124	3.0243428105102	3.19446521390816	2.93077917479004	2.86345531680918	3.01380176159864	3.1373199091008	-0.472496309829564	0.419119603300484	0.712251159515261
Merged-chr10-99270599-4	chr10	99270502	99270702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7371.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	7.42828528401969	7.58932406815873	7.72146536647162	7.98679779735961	7.4183704393022	7.65580472326748	7.54234889326608	7.41441794958414	-0.26654405456552	0.175350859376095	0.470052303676838
Merged-chr2-6267764-4	chr2	6267652	6267852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-54758.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	7.20468240158536	7.15527857302506	7.34542519563331	7.51422488329861	7.27788333053586	7.09200803764698	7.6885213814009	7.51091980968692	0.122403103954872	0.559817343733021	0.804069320655764
Merged-chr10-6983884-1	chr10	6983784	6983984	+	542.0	f0_balb.idr	intron (NM_001039652, intron 4 of 5)	MTE2a|LTR|ERVL-MaLR	-3419.0	NM_001170801	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	3.20414219078025	3.18225073447372	3.67712917764705	3.17497247434872	2.7332442812258	2.83823911047149	2.94369450283703	3.20278392723325	-1.60402927555857	0.014414426906237	0.101969593828798
Merged-chr6-8427834-4	chr6	8427667	8427867	+	990.892822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001302353, exon 5 of 5)	3' UTR (NM_001302353, exon 5 of 5)	81394.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	4.06942866366009	4.63295290042509	5.00222014668987	4.69410191761153	4.28423481697934	4.30725041785214	4.21243283344776	4.53983267150856	-0.685747877151254	0.102859865123637	0.35216269069915
Merged-chr7-80299724-4	chr7	80299619	80299819	+	882.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145150, intron 1 of 13)	intron (NM_145150, intron 1 of 13)	5268.0	NM_001285998	233406.0	Mm.227274	NM_145150	ENSMUSG00000038943	Prc1	D7Ertd348e	protein regulator of cytokinesis 1	protein-coding	4.15764527943918	3.53555764026097	3.77576488362679	3.86990389774444	3.95014464356191	3.8971705480546	3.76084203646731	4.3809897498234	0.454062582281735	0.346910190115226	0.654996695461728
Merged-chr15-25322253-4	chr15	25322145	25322345	+	979.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91519.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	5.46479304497655	4.87139432368175	5.46574590356507	5.34863184953246	5.34290561844418	5.20444403644152	5.5392888066077	5.19745343074125	0.0423993451545313	0.892185511330296	0.959609735423941
Merged-chr18-69415710-4	chr18	69415659	69415859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	69599.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	4.65902287768737	4.60432096930121	5.14306429049571	4.63818818030967	4.55176289237957	5.19365089500576	4.75712732700198	5.01928749364231	0.249225914792772	0.503393647268654	0.770378167467835
Merged-chr5-113650557-4	chr5	113650412	113650612	+	978.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008153)	promoter-TSS (NM_008153)	-122.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	5.7482406425423	5.45581923045822	5.70308221344565	5.95152105472392	5.44746153943516	5.43413417595819	4.97492343826279	5.25258217266685	-0.764223134373025	0.0109002234670296	0.0839501196883466
Merged-chr2-180701252-4	chr2	180701135	180701335	+	933.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291432, intron 1 of 5)	intron (NM_001291432, intron 1 of 5)	867.0	NM_011805	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	4.37111746263219	4.95489244615863	5.06196573279634	4.01813648724924	4.6904349214248	4.64984626612242	4.94495618166688	5.05837979949226	0.372867086242624	0.388983281100059	0.689359649572281
Merged-chr9-75100568-3	chr9	75100449	75100649	+	581.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010864, intron 1 of 40)	intron (NM_010864, intron 1 of 40)	29343.0	NM_010864	17918.0	Mm.3645	NM_010864	ENSMUSG00000034593	Myo5a	9630007J19Rik|AI413174|AI661011|Dbv|MVa|Myo5|MyoVA|Sev-1|d|d-120J|flail|flr	myosin VA	protein-coding	3.43611746728863	3.45173818080852	3.81888382780901	3.51486549345703	3.23468489178134	3.0848863648419	3.36690330769888	3.54153199789309	-0.852310640018284	0.120652747387991	0.384581082293665
Merged-chr12-106031776-4	chr12	106031676	106031876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029843, intron 1 of 13)	intron (NM_001029843, intron 1 of 13)	21513.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	5.64180508188024	5.68872920155271	5.74563253903906	5.90975482872929	6.04808829246902	5.73648888562493	5.61442080253118	5.74156815912981	0.073865521609626	0.781342705465307	0.914858982946737
Merged-chr11-70687196-4	chr11	70687097	70687297	+	950.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190379, intron 1 of 20)	intron (NM_001190379, intron 1 of 20)	908.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	4.4709226328912	4.86326787493553	4.55512084213929	4.67116206827654	4.70030018212682	4.55774409517053	4.268465024214	4.37965542167297	-0.346283975132985	0.35749358216348	0.663619560848277
Merged-chr19-43920673-3	chr19	43920587	43920787	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	19511.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	3.44359892442438	3.42342074182032	3.70552164248224	3.93630291992733	3.18408603544864	3.37048765926218	3.48716253885528	3.6051545377075	-0.7962695635862	0.144128999124632	0.422875433993908
Merged-chr10-51553556-4	chr10	51553452	51553652	+	934.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36908.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	4.60420015797034	4.62632039593858	4.72764882010297	5.0049923104127	4.99708632244497	5.04591697224206	4.66636806982916	4.68499430999555	0.191978796395072	0.58970581081553	0.820539533210917
Merged-chr8-83332548-4	chr8	83332445	83332645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170691)	promoter-TSS (NM_001170691)	-59.0	NM_178736	244548.0	Mm.38762	NM_178736	ENSMUSG00000035151	Elmod2	9830169G11Rik	ELMO/CED-12 domain containing 2	protein-coding	8.41530628255463	8.57632773769414	8.15781227978771	8.03142136914468	8.34447679722232	8.4490759644594	8.37239294340756	7.97828347346004	-0.013238733489827	0.945717415036027	0.980628157693195
Merged-chr3-19904887-3	chr3	19904796	19904996	+	740.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10025.0	NR_027985	70808.0	Mm.427103	NR_027985	ENSMUSG00000048106	4632415L05Rik	AI662792	RRS1 ribosome biogenesis regulator homolog pseudogene	pseudo	3.1259107033923	2.97137586002352	3.24224681623762	3.38112642751291	3.02357639020132	3.17351207784631	3.33441781288175	3.12475339320172	-0.125731721692324	0.827423113756304	0.93381914867164
Merged-chr12-85498039-4	chr12	85497939	85498139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24149.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	7.74294367428099	7.65937046979842	7.37499626886412	7.40185984733927	7.5024766236946	7.50025767125338	7.63625382910471	7.18279669432615	-0.109627148279307	0.575295203976044	0.812946682095071
Merged-chr10-93539960-4	chr10	93539868	93540068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027908)	promoter-TSS (NM_027908)	65.0	NM_027908	71761.0	Mm.244518	NM_027908	ENSMUSG00000015890	Amdhd1	1300019J08Rik	amidohydrolase domain containing 1	protein-coding	6.90786558919483	7.25259574416028	7.13802580223945	7.30473593641114	7.24244719617165	7.30326783075131	7.39059669601874	6.94532233308812	0.0838780049634738	0.679221395515022	0.868329272937217
Merged-chr8-46742066-2	chr8	46741966	46742166	+	908.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	2321.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	2.43520203656181	2.5474216785948	2.50633942743378	2.33419215838825	2.52819389689924	2.68001489774532	2.80038220401568	2.63636662513882	1.12045153069588	0.0957776486135581	0.338959140600361
Merged-chr9-108341175-4	chr9	108341048	108341248	+	934.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001329528)	TTS (NM_001329528)	2068.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	4.2301944224514	4.41529483277385	4.79014117460448	4.33566092010515	4.58025733799621	4.40826783262612	4.59548785672355	4.3702510097781	0.102924234203619	0.788731705891359	0.91812687233996
Merged-chr17-26123442-4	chr17	26123356	26123556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024227)	promoter-TSS (NM_024227)	-47.0	NM_024227	68611.0	Mm.273102	NM_024227	ENSMUSG00000024181	Mrpl28	1110015G04Rik|L28mt|MAAT1|MRP-L28|p15	mitochondrial ribosomal protein L28	protein-coding	6.72956052660764	6.86344096414086	6.2861781105356	6.25169584022963	6.72241820033512	6.66284150759012	6.27347993178561	6.26180040064344	-0.0738221969721474	0.777606425352034	0.913263501140687
Merged-chr13-43492846-4	chr13	43492750	43492950	+	829.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11877.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	3.76916828530531	4.00963604324694	3.91478270106274	3.47899977822955	3.77146469073598	3.78203569273801	3.85132047296831	3.41840815938426	-0.244854394822242	0.625153572973617	0.839735974131569
Merged-chr16-93288235-2	chr16	93288135	93288335	+	615.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64954.0	NR_040486	69857.0	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	3.22881004279229	3.25045178019459	2.98673417178063	3.17387066380303	3.11288139961021	3.16051427298213	3.10270383161698	3.22748664791867	-0.0601346526766944	0.913386017863388	0.967524531047837
Merged-chr5-120518916-2	chr5	120518816	120519016	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 2 of 13)	B1_Mus1|SINE|Alu	7724.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	3.01554112691268	3.06804731264303	3.07693667745497	2.72410897458628	2.8423852366802	2.99490191019864	3.32961458655066	3.1891435657841	0.525532250117509	0.391163177275479	0.691034940965009
Merged-chr3-28012417-4	chr3	28012333	28012533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	28262.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	7.38334181482425	7.46248680078786	7.57999710026987	7.77565483628158	7.30420513117463	7.40122129014221	7.490105167626	7.27456130374249	-0.269123686611045	0.149979935882106	0.432360854406563
Merged-chr1-165641603-4	chr1	165641511	165641711	+	990.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7070.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	5.14676244138555	5.11525485519225	4.92758463801949	4.97239343974062	5.627553619912	5.50903162841796	5.18764707627318	5.61672619910864	0.840660310902197	0.00441639906262297	0.0433234383790574
Merged-chr3-154881746-2	chr3	154881627	154881827	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177066, intron 17 of 24)	ORR1D2|LTR|ERVL-MaLR	170594.0	NM_175176	209601.0	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	2.10309642981425	2.06312096952636	2.1032448259896	1.95902408977802	2.58913735524322	2.72076148271306	2.76308244277846	2.60622059533334	4.57284437449028	1.07189482029346e-06	3.7345277246044e-05
Merged-chr12-72847883-3	chr12	72847808	72848008	+	777.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69857.0	NM_029444	75801.0	Mm.242892	NM_029444	ENSMUSG00000021098	4930447C04Rik	4921504I02Rik|A930035O15Rik|Six6OS|Six6as|Six6os1	RIKEN cDNA 4930447C04 gene	protein-coding	4.04883014299496	3.93665930876592	3.52900809680779	3.63214516496432	3.47010281676015	3.31462498558312	3.39524673761138	3.78999788383991	-0.927896048335454	0.0803588437893272	0.307304416719761
Merged-chr17-12036341-3	chr17	12036241	12036441	+	703.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016694, intron 10 of 11)	intron (NM_016694, intron 10 of 11)	-82943.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	3.33854615919358	3.55318198880744	3.39826814454477	3.32408948150194	3.65356530211685	3.6781746301658	3.49520690688096	3.21034884324776	0.408601459734367	0.430480046918112	0.721108120456474
Merged-chr11-97469068-3	chr11	97468941	97469141	+	755.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021493, intron 11 of 18)	intron (NM_021493, intron 11 of 18)	18881.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	3.26011326995151	3.23723447372868	3.14571003802921	3.29854702297602	3.44413661388706	2.91022517317669	3.1347628244176	3.14417909119949	-0.209756649938232	0.719282516276515	0.887864356028823
Merged-chr9-42473605-2	chr9	42473505	42473705	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1347.0	NM_173038	272589.0	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding	3.10018023024928	3.67932040282994	3.10050003141451	2.97573769415856	3.52582491151376	3.75231191669201	3.56657058236807	3.58011769980119	1.2331579286677	0.0313563477528747	0.172455489489852
Merged-chr18-57355350-1	chr18	57355250	57355450	+	814.0	f0_c57.idr	intron (NM_028447, intron 1 of 8)	intron (NM_028447, intron 1 of 8)	617.0	NM_028447	73137.0	Mm.29889	NM_028447	ENSMUSG00000024594	Prrc1	1190002C06Rik|2310058D16Rik|3110038B19Rik|9430085A19Rik	proline-rich coiled-coil 1	protein-coding	5.13439155504446	4.89985503458662	5.16471981109592	5.08968920904191	4.74844268351289	4.89156019236547	4.60834802405644	4.83042796840859	-0.610728186433271	0.0600298528951964	0.2585460302291
Merged-chr11-83560605-4	chr11	83560500	83560700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	18036.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	5.75066772373468	5.75067690210042	5.52529317185953	5.43861358680025	5.41512161890079	5.39409563709943	5.78911712572714	5.37574976114997	-0.188728789601014	0.507187192701033	0.772710503440438
Merged-chr12-108913038-4	chr12	108912942	108913142	+	966.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	18770.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	5.46020977832542	5.2556612574617	5.37913240913407	5.60394664277198	5.29716469764706	5.00306876128196	5.13892250334857	5.2257062307311	-0.477563876248656	0.107864328276816	0.36234249008521
Merged-chr1-165133505-2	chr1	165133405	165133605	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27268.0	NM_032005	83993.0	Mm.190649	NM_032005	ENSMUSG00000026572	Tbx19	AU019250|D1Ertd754e|Tpit	T-box 19	protein-coding	2.97975044668356	3.33209457304925	3.16890348025767	2.89215525234372	3.17149238612254	3.2201376040893	3.15697591466124	3.27925235097032	0.427302905181192	0.45366857344743	0.73762335852288
Merged-chr16-4723009-4	chr16	4722907	4723107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-3354.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	6.01138951359692	5.94769644927347	6.53490262330135	6.33475326176892	6.05837561288516	6.51216304328277	6.35664355789983	6.41863309869457	0.159137637008156	0.534956677796679	0.789518367971342
Merged-chr10-54074892-11	chr10	54074786	54074986	+	965.339417	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008548, exon 2 of 13)	exon (NM_008548, exon 2 of 13)	910.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	4.70798094872572	4.39865868098346	4.67231682743901	4.57568759167591	4.61104845221641	4.31103248648987	4.36380883766206	4.8414135542831	-0.0803815117048063	0.830494678050579	0.93499882818844
Merged-chr5-121255127-4	chr5	121255021	121255221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 2 of 75)	intron (NM_181421, intron 2 of 75)	34902.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	5.57779666035557	6.21105088487388	6.09026920767216	5.85175636444654	5.56539076532917	5.69863907446568	5.85298757563583	5.65792181040087	-0.423575635878359	0.122818216529657	0.388421608708245
Merged-chr2-161109171-4	chr2	161109073	161109273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173368)	promoter-TSS (NM_173368)	-87.0	NR_126509	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	8.81768292334006	8.84056952403197	9.03253613070291	9.31481636647532	9.06051792862676	8.93323080930949	9.06605268606416	9.07761926484404	0.0147686081092257	0.930307695866606	0.974846106615766
Merged-chr11-58168439-4	chr11	58168308	58168508	+	989.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172558, exon 1 of 28)	exon (NM_172558, exon 1 of 28)	131.0	NM_172558	216766.0	Mm.275349	NM_172558	ENSMUSG00000037275	Gemin5	AA407055|AA407208|AI451603|BB194447|C330013N08	gem nuclear organelle associated protein 5	protein-coding	4.60728073739896	4.91873652625593	4.94601943275542	4.70079443339551	4.90671095212887	4.97918540353751	4.54392070627258	4.80352352772683	0.0520277277779645	0.879742254512228	0.954974140832096
Merged-chr13-30769424-4	chr13	30769316	30769516	+	980.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	20183.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	5.53110713236713	5.46983946931857	5.11149405685513	4.77544813034719	5.25368167760877	5.42241266794862	5.62477206586706	5.4760042937395	0.369361406464363	0.266072926544152	0.577825385601849
Merged-chr7-39523920-4	chr7	39523906	39524106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004139, intron 1 of 3)	intron (NM_001004139, intron 1 of 3)	6240.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	5.20842521445916	5.30575412869228	5.1101159549574	5.47907910259991	5.32131218935797	5.35134077460194	5.01540333506293	5.23712106870864	-0.109435158947535	0.71718606083873	0.88693770631107
Merged-chr18-66041338-4	chr18	66041232	66041432	+	836.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38697.0	NM_001172062	70361.0	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	3.6584983943189	3.8824164793733	3.49062398967539	3.76256300887889	3.58107509445972	3.54351194545375	3.69532281511597	3.70844660466622	-0.247883402137266	0.604510296558617	0.828485859893348
Merged-chr17-71136813-4	chr17	71136717	71136917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-46715.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	5.74133206564437	5.59743143428753	5.59333267674401	5.709632901557	5.29249157457754	5.62994569438954	5.71313091317859	5.42060707912554	-0.256886111275719	0.347667808857652	0.655546119710951
Merged-chr10-78520776-2	chr10	78520676	78520876	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53724.0	NM_173751	216136.0	Mm.2644	NM_173751	ENSMUSG00000032763	Ilvbl	5830463I21|AI415009	ilvB (bacterial acetolactate synthase)-like	protein-coding	2.31506438947658	2.32951986935896	2.31524369149326	2.65444676421039	2.58289010375724	2.62581713932905	2.57551111917356	2.58366806869837	0.877336452884633	0.242279828425124	0.552997784430716
Merged-chr10-10551120-3	chr10	10551025	10551225	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	7082.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	3.39609822932278	3.50512565109101	3.92326200306883	4.02484589410795	3.51635715201564	3.80308629986351	3.72198069566722	3.73515711492059	-0.178401560004939	0.731873517951117	0.893842682027583
Merged-chr11-69629009-4	chr11	69628893	69629093	+	933.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3978.0	NM_011814	23879.0	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	4.30716479370318	4.24782435176424	4.16537299623861	4.36415036694396	4.59276694789253	4.68364099673824	4.33249188382753	4.16293810165392	0.427397256743306	0.275426720945537	0.5872101650447
Merged-chr15-38710381-4	chr15	38710290	38710490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18126.0	NR_131206	105463124.0	Mm.432448	NR_131206	ENSMUSG00000115620	Gm45924	Borg	predicted gene, 45924	ncRNA	8.03195001387315	7.85100387007356	8.28988718333374	8.51433901996361	7.59908623827581	7.78063342484199	8.35904061806651	7.76333715188987	-0.377246441918816	0.102669862471334	0.351935378803134
Merged-chr3-95673376-4	chr3	95673280	95673480	+	848.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14537.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	3.92990722034754	3.90044181142891	3.59643719315075	3.82313352249043	3.97213429067224	4.28111370793616	3.64485826789284	4.15256454250214	0.578633160125843	0.211933566143071	0.516740975730402
Merged-chr5-99266508-4	chr5	99266407	99266607	+	952.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13580.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.8790500055039	4.55733734365384	4.46635448737122	4.36118044775194	5.6502351073325	4.94515459317122	4.78375073522533	4.76575570919579	1.07807058187993	0.0064531241672235	0.0572798260504803
Merged-chr14-49894937-3	chr14	49894841	49895041	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146494, exon 2 of 2)	exon (NM_146494, exon 2 of 2)	7000.0	NM_146494	258487.0	Mm.270514	NM_146494	ENSMUSG00000048933	Olfr722	MOR241-3	olfactory receptor 722	protein-coding	4.09042121576755	3.74018539837026	4.2739479396291	3.80153971746465	5.80615744957186	5.66217044779909	5.48096992766161	5.38728704108768	3.39219473741631	2.54161173308851e-20	8.86810693870132e-18
Merged-chr2-43722886-4	chr2	43722774	43722974	+	864.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25950.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	3.96627325844851	4.10794498620559	3.85752010696249	4.14787885325778	4.52474913623508	3.85895036982562	4.18684272357792	4.32726851039952	0.563438011634989	0.19919817071667	0.50101507397321
Merged-chr6-87993003-4	chr6	87992911	87993111	+	978.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11328.0	NR_026990	434064.0	Mm.371796	NR_026990	ENSMUSG00000084950	Gm5577	EG434064	predicted gene 5577	ncRNA	4.93783940686696	5.01747872073997	5.04378584735165	5.34333556909425	4.93863316509339	4.87789603925765	5.05226751994581	5.19806325474813	-0.181447086503294	0.574606850508877	0.81246206040379
Merged-chr4-35225999-7	chr4	35225894	35226094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081343)	promoter-TSS (NM_001081343)	-114.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	7.17768671500961	7.14001544898128	7.78648346781277	7.03439520815784	7.19577016223387	7.36767782636437	7.31410265737977	7.32537717965751	-0.0153728833550108	0.945353232613383	0.980464778437826
Merged-chr13-88810293-3	chr13	88810188	88810388	+	965.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11184.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	3.97356902666298	3.42855697969579	4.02715024672975	3.80891059060512	4.44462082449721	4.43772675551817	4.70605842650321	4.30416891167623	1.6552178016624	0.000193527999056324	0.00353934466722253
Merged-chr5-147542460-4	chr5	147542366	147542566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 16 of 18)	intron (NM_028291, intron 16 of 18)	112310.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	7.38785658106444	7.24528087276911	7.37908880008353	7.72356339509263	7.39933935500439	7.44045743994166	7.63634157209977	7.2906991944983	-0.0162987402804171	0.934705979631217	0.97635719558922
Merged-chr13-42150097-4	chr13	42150010	42150210	+	947.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 3 of 8)	intron (NM_007772, intron 3 of 8)	98089.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	5.46236469860231	4.55337347497617	5.89467809022528	5.61851162341382	4.81653873926528	5.14316134917474	4.86150457833681	5.1042076304254	-0.889043447455954	0.0245829410679022	0.146732843796412
Merged-chr15-72837127-4	chr15	72837038	72837238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164641, intron 17 of 17)	intron (NM_001164641, intron 17 of 17)	-26814.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	7.44639129882362	7.15717234371187	6.92018651775632	7.25579804773105	7.17936672932554	7.61496052908836	7.13617492835557	7.09673419960634	0.0811267904686823	0.706112887825452	0.881879743016467
Merged-chr17-32321313-4	chr17	32321214	32321414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131218)	promoter-TSS (NR_131218)	-76.0	NR_131218	56399.0	Mm.328945	NM_019774	ENSMUSG00000024045	Akap8	1200016A02Rik|AA673585|AKAP-8|AKAP95|AU015639	A kinase (PRKA) anchor protein 8	protein-coding	8.32753941880621	8.02232644539888	8.26881469637855	8.08613012799045	8.05894126482079	8.34753944004647	8.16106265093104	7.93953025561237	-0.0572245878922782	0.74186312891394	0.898417179766546
Merged-chr7-46846418-4	chr7	46846324	46846524	+	970.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136069)	promoter-TSS (NM_001136069)	620.0	NR_102727	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	4.78781607470114	4.80090170126126	4.71054553098745	4.91373915831891	4.62741058711391	4.92426125006493	4.83890036298905	5.08677075684454	0.113743298075244	0.735858001322988	0.895714951678205
Merged-chr1-184034349-4	chr1	184034225	184034425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028516)	promoter-TSS (NM_028516)	-56.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	9.25160009283684	9.31883405832905	9.30319669078456	9.27375745597754	9.25071952686777	9.36915110455718	9.57783931404123	9.24132963456897	0.0970948162262586	0.505843389316621	0.771672879897407
Merged-chr10-60277682-4	chr10	60277570	60277770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146120)	promoter-TSS (NM_001146120)	42.0	NM_001146121	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	6.69751036686686	7.07873899143617	7.00533545290203	7.07583705841344	7.50374074652616	7.40721911586673	7.21548733938262	7.57283987252993	0.612064047439831	0.00196313791973673	0.0231041987415576
Merged-chr2-167335921-3	chr2	167335823	167336023	+	819.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	13255.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	3.91985335224618	3.63505906526921	3.73248243958507	4.10252202326764	3.68467375899075	3.4321533293235	3.43898313944152	3.62496001764032	-0.970951468831085	0.054297393618766	0.243349260851462
Merged-chr11-76631287-4	chr11	76631203	76631403	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-41167.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	5.49322410989403	5.42934809617451	5.74371405925218	5.85007595589228	5.31482399603769	5.09458338808192	5.38160193020112	5.57044953989038	-0.522404775537681	0.0759268362613219	0.297732608425097
Merged-chr1-134060993-4	chr1	134060908	134061108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18147.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	6.59515712103944	6.10197670155876	6.50482860860545	6.50986221166468	6.3463232203309	6.08838471318321	6.45567239213629	5.95441616244378	-0.312430769089428	0.209089748475682	0.51350099046857
Merged-chr6-128754160-6	chr6	128754090	128754290	+	712.930542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31144.0	NM_001099918	100043861.0	Mm.66911	NM_001099918	ENSMUSG00000079299	Klrb1	4930431A04Rik|Gm4696|Klrb1g|Klrb6|Ly-55|Ly55|NKR-P1G|Nkrp-1e|Nkrp1g	killer cell lectin-like receptor subfamily B member 1	protein-coding	2.97366853119469	2.81142520566105	2.85444610337728	2.59778053011669	2.80336491281575	2.7592641742547	2.57080323378125	3.22926534377763	0.231096232130115	0.732676865965427	0.894117760943528
Merged-chr13-41605324-1	chr13	41605224	41605424	+	1000.0	f0_c57.idr	promoter-TSS (NM_001163572)	promoter-TSS (NM_001163572)	-892.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	5.50371040428261	5.55335462189213	5.85158744518038	5.84485605035388	6.18917087083664	5.82664232346736	6.19945782663068	5.82386095851203	0.517194764121098	0.053187541807976	0.240528739396338
Merged-chr2-52956110-4	chr2	52956010	52956210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	98242.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	7.01519917199295	6.84166527438845	7.21785425669629	7.11108128454941	6.82739711847134	6.78123529009459	6.90624239272582	6.71128794088017	-0.341925001249942	0.0857241538401112	0.318862852538946
Merged-chr1-132312888-4	chr1	132312797	132312997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3228.0	NM_001195025	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	6.00101749627365	6.121741374465	6.04523297177634	6.01386298244617	6.12502024204736	6.01512105326201	6.03532503156169	6.12298134840031	0.0531648260045327	0.816481966046824	0.929363095066699
Merged-chr9-75547367-4	chr9	75547271	75547471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	12286.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	5.72840706492523	5.82748574345086	5.24834802785709	5.86946973370979	6.56317010437187	6.21358352466557	6.20059975225327	6.22826206354055	0.953271204712223	0.000451300318308717	0.00710165086611591
Merged-chr17-8905653-4	chr17	8905585	8905785	+	889.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 2 of 21)	intron (NM_001347321, intron 2 of 21)	55700.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	4.19228268337232	3.98181604105014	4.32131083021684	4.66394071877115	4.12458272484854	4.01197644279073	4.08214177145226	3.99659801788234	-0.695370261146379	0.113566374305128	0.372599260505404
Merged-chr4-143190828-2	chr4	143190728	143190928	+	744.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256380, intron 2 of 7)	intron (NM_001256380, intron 2 of 7)	21881.0	NM_001081355	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	2.7005687108208	2.87424606181256	2.97132451532508	2.87379714427363	3.12963070122059	3.0167361010965	3.12984160573094	3.08649743961916	0.980508589081332	0.0943544566691882	0.336071650883514
Merged-chr9-49055568-4	chr9	49055477	49055677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012039)	promoter-TSS (NM_012039)	-4.0	NM_012039	26951.0	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	7.71188719046483	7.59411273888461	7.17997956498957	7.61341579505208	7.59919536766826	7.45088364199893	7.85820367526078	7.48383530126092	0.0862511310734489	0.665611081704372	0.861519305814112
Merged-chr12-13562838-3	chr12	13562744	13562944	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027706, intron 50 of 51)	intron (NM_027706, intron 50 of 51)	64802.0	NR_136761	102639399.0	Mm.122052	NR_136761	ENSMUSG00000113666	Gm35725	-	predicted gene, 35725	ncRNA	3.27933377398163	3.21087708984633	3.22375595238846	3.36000334094778	3.22246195391091	2.9329015216708	3.50842509039602	3.03881700471651	-0.284809920575615	0.626086218946796	0.84026304733415
Merged-chr9-118661596-1	chr9	118661496	118661696	+	988.0	f1_balb.idr	intron (NM_133721, intron 7 of 27)	intron (NM_133721, intron 7 of 27)	-50096.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.6036001556108	2.46111925404281	2.38748041985832	2.34414309183786	2.55574126063438	2.95843647873507	2.72005990661666	2.72949349457869	1.55154399907822	0.022800003160653	0.139482718089567
Merged-chr7-19328019-4	chr7	19327925	19328125	+	862.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17046.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	3.82651634212777	3.5870881306228	3.38113407432655	3.63127755312696	4.02594223001342	3.84814312329824	3.60894722237717	3.62105236885935	0.537635878092822	0.272313012005868	0.583789165760065
Merged-chr19-43885269-4	chr19	43885178	43885378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 4 of 15)	intron (NM_028029, intron 4 of 15)	-5510.0	NM_001306088	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	5.48619670840576	5.15371937268815	5.77585165868898	5.75643208393038	5.38557075452335	5.17933833452474	5.19116886644779	5.34030287212841	-0.515023833678642	0.092968446932335	0.33357198730702
Merged-chr2-75978203-4	chr2	75978105	75978305	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081228)	promoter-TSS (NM_001081228)	-26.0	NM_001081228	620631.0	Mm.389286	NM_001081228	ENSMUSG00000075272	Ttc30a2	-	tetratricopeptide repeat domain 30A2	protein-coding	6.59510361563219	6.23635281820011	5.36995688960971	6.39040695069571	6.85100237564085	6.93185816254308	6.83800159451804	6.7512086604959	0.889816758776912	0.00232036553958272	0.0262164219035456
Merged-chr9-40343284-3	chr9	40343197	40343397	+	815.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040728)	TTS (NR_040728)	2948.0	NM_001357623	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	3.7031017257424	3.52150621466378	3.80474184303761	3.60516411083048	3.94430863427984	3.71032999102678	3.73974801627371	3.80249757772688	0.462668623545404	0.313289290735276	0.625166179930743
Merged-chr10-34128648-4	chr10	34128530	34128730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175449)	promoter-TSS (NM_175449)	-658.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	7.0008303320835	7.67366229485336	7.48862799153786	7.30015346602681	7.58367572164475	7.20603388602884	7.10366746654105	6.85770152049052	-0.222904755496374	0.350442179947989	0.658055137870761
Merged-chr14-54464842-4	chr14	54464748	54464948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022993, intron 1 of 6)	intron (NM_022993, intron 1 of 6)	701.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	5.79924509507118	6.34678218268771	5.64473852695781	5.34443223217298	6.19623924720447	6.27647125581295	5.5312949816008	5.58446635602917	0.176656173883368	0.60800755178991	0.83032239482552
Merged-chr1-176814765-4	chr1	176814666	176814866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151682, exon 1 of 17)	non-coding (NR_151682, exon 1 of 17)	106.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	8.18645669830949	8.37829262306331	8.20014404675163	8.44184544080085	8.40543601355368	8.43788997967583	8.80719881065428	8.32861085281688	0.247871471257953	0.160051267349184	0.44791574894423
Merged-chr6-83454018-4	chr6	83453910	83454110	+	981.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 2 of 11)	intron (NM_001347313, intron 2 of 11)	2382.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	5.07175868648934	4.47148260592847	5.32768499035073	5.15611646145482	4.99451251336425	5.042870363793	4.68954969612612	4.57706925837972	-0.396336423732879	0.295072938431217	0.607132847913763
Merged-chr3-116662656-4	chr3	116662556	116662756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008246)	promoter-TSS (NM_008246)	21.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	8.32149460455782	8.24049936725807	7.98085012379563	8.27089644514245	8.2655748792548	8.35654984965636	8.4885885155236	8.04503341205231	0.109143981609199	0.530672149474872	0.786734835613428
Merged-chr2-102401111-4	chr2	102401019	102401219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020267)	promoter-TSS (NM_020267)	-219.0	NM_020267	80985.0	Mm.315002	NM_020267	ENSMUSG00000027189	Trim44	Dipb|Mc7	tripartite motif-containing 44	protein-coding	6.21411418397427	6.13210618966284	5.99098849018996	6.24211947017491	5.97981230365549	6.00155704221431	6.16480155178566	5.9867374641605	-0.191559385494042	0.411808701837103	0.707168433970161
Merged-chr13-37332854-4	chr13	37332764	37332964	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12481.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.54750536895907	3.71098688718839	3.6620560459307	4.00614587275073	3.84277177136884	3.53708308470923	3.84719548404076	3.81407510875977	0.0282579434402117	0.953815710858482	0.98356631534778
Merged-chr12-55447274-4	chr12	55447138	55447338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45409.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	6.44959795608108	6.5778364722875	7.17846067992824	7.20900871583996	6.02185800626162	6.53777206478318	6.43495868773317	6.03428673199869	-0.922034393663268	0.000869006932699044	0.0120340553429154
Merged-chr15-64023892-4	chr15	64023795	64023995	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	-25829.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	5.28897068199507	5.33623059136616	5.62316853774746	5.78457787465797	5.21374399153347	5.14847112095547	5.44006206135646	5.56945251322784	-0.332622815576022	0.276077840805922	0.588116016284595
Merged-chr4-130899541-4	chr4	130899449	130899649	+	971.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13785.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	4.98863277328651	5.35317126781208	5.49467611016777	5.72877933012965	4.97332622115143	4.96474627871627	5.33036276356082	5.63787034438742	-0.319491840806755	0.358400333132146	0.664380976348606
Merged-chr6-145115609-4	chr6	145115536	145115736	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281981)	promoter-TSS (NM_001281981)	0.0	NM_001281980	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	5.25116399260281	5.39634660991085	5.00574672686504	5.21122951386523	6.41330003073302	6.18363002982261	6.86852738998404	6.39783851107619	2.01286969942203	4.45962170691168e-13	5.15310736162771e-11
Merged-chr5-121917765-3	chr5	121917664	121917864	+	901.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007804, intron 4 of 22)	intron (NM_007804, intron 4 of 22)	68767.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	3.76893769936641	3.80155777943114	3.62384903372816	3.52598936873708	3.19518348639874	3.24323330542819	3.50283739217769	3.67207930114227	-0.889695304895468	0.094915507291948	0.337142117547461
Merged-chr7-128128892-4	chr7	128128760	128128960	+	888.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021334)	promoter-TSS (NM_021334)	-708.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	3.21277762967825	3.21033070013554	3.08608004535789	3.34354418092188	3.26753357465998	3.32453428861703	3.31607954912614	3.53095725261901	0.486778582410119	0.365018545122071	0.669749500359775
Merged-chr15-100687235-4	chr15	100687143	100687343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 1 of 7)	intron (NM_033612, intron 1 of 7)	677.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	5.11741499365132	4.9769853844794	4.97556345143174	4.88154311149127	5.27197709469879	5.35865367431194	5.49195448214296	5.54046725039892	0.806086079259941	0.00595726621111312	0.0539755921131391
Merged-chr5-63812462-4	chr5	63812384	63812584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029554)	promoter-TSS (NM_029554)	-11.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	6.1044781903476	6.18332773474213	6.35732715412951	6.35598534875394	6.31755762167265	6.14739687462531	6.28936855892674	6.48544389541449	0.0827367088478035	0.715967458479872	0.886371813543908
Merged-chr9-111554788-4	chr9	111554680	111554880	+	975.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	115699.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	5.02912039587367	5.31103128775679	5.51634764299305	5.35929121328945	6.26332668942091	5.85573139169923	6.1640396502577	5.84275044932115	1.21098301978369	1.34520008682177e-05	0.000360097769762643
Merged-chr1-120293977-4	chr1	120293885	120294085	+	916.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-22903.0	NM_001085409	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	4.39340977200296	4.47819850204472	4.43943360122075	4.94491010078349	4.79420975821524	4.32268879386902	4.73114544967353	4.52277690867703	0.0142310389636417	0.971539709783166	0.989698355367312
Merged-chr2-103796007-4	chr2	103795937	103796137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111292, intron 1 of 16)	intron (NM_001111292, intron 1 of 16)	1041.0	NM_001111290	53872.0	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	5.74966015244841	5.81611058195059	6.10497502784912	5.67232330838273	5.87362241311788	5.97626551106672	6.14787478292778	5.8682501066814	0.218023572649987	0.394691487592063	0.693696530342229
Merged-chr5-145201898-4	chr5	145201771	145201971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023322)	promoter-TSS (NM_023322)	11.0	NM_023322	67235.0	Mm.432480	NM_023322	ENSMUSG00000029627	Zkscan14	2310046C23Rik|2810437E14Rik|Zfp99|Znf394	zinc finger with KRAB and SCAN domains 14	protein-coding	7.27969072643107	7.50958982199376	7.12528227681856	7.04113141942782	7.36054057386322	7.09779890798529	7.20221126624985	7.17809214213873	-0.0358012068952554	0.858508529769042	0.946576014812915
Merged-chr16-75906990-2	chr16	75906890	75907090	+	778.93335	f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 1 of 7)	intron (NM_023380, intron 1 of 7)	2276.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	3.25675471798904	3.39194376421042	3.37461584392798	3.04390924949411	3.55669125757022	3.65034659565565	3.24550557435473	3.25552854793262	0.624209117555386	0.251665339744954	0.562974550353754
Merged-chr7-63911481-4	chr7	63911405	63911605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-5352.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	6.83452232869185	6.24072175746434	6.58277066745127	6.70479517737283	6.29988086813948	6.31797710091152	6.65319950658912	6.39394817855783	-0.276708383628493	0.244008134718256	0.555073666382575
Merged-chr6-5211877-4	chr6	5211776	5211976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17930.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	6.55201233644952	6.16401729261349	6.68795208201304	7.03977525911655	6.17537469522895	6.40838232946811	6.17814862454754	6.4836254165197	-0.512849073848578	0.0530139931397203	0.240117824269137
Merged-chr11-31868125-4	chr11	31868022	31868222	+	837.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2818.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	4.24486671006565	3.98737138466222	4.1978018152032	4.5629680293889	4.05654873961097	4.50832722749568	4.51583116569346	4.57111648150579	0.33000944911621	0.442154052127226	0.728953187628121
Merged-chr19-18716569-4	chr19	18716475	18716675	+	825.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177640, intron 1 of 1)	B3|SINE|B2	3339.0	NM_177640	225995.0	Mm.28101	NM_177640	ENSMUSG00000047044	D030056L22Rik	-	RIKEN cDNA D030056L22 gene	protein-coding	4.60293192243615	3.95615834410649	3.78752696820343	4.1565692279832	4.06742805706969	4.29503201759678	4.28263717457315	4.4960495486798	0.319024656834029	0.478773826938443	0.754690163973656
Merged-chr2-129333617-2	chr2	129333502	129333702	+	576.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23630.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	1.9899036808805	1.86867551881976	1.90456372104089	1.69000087071416	2.26856862611513	2.59019933662757	2.46463384948241	2.28766535561127	5.64872051151852	1.2637996967495e-07	5.30713856135296e-06
Merged-chr2-102290234-4	chr2	102290121	102290321	+	952.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103761.0	NM_001290784	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	4.67021311534101	5.00434832754325	4.62730420929575	4.67940814242303	5.14442447140754	5.07952025467508	4.98461131970238	5.16057151995013	0.680473453712014	0.0346736494351822	0.184333086350499
Merged-chr14-54735223-3	chr14	54735100	54735300	+	933.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 5 of 10)	intron (NM_016972, intron 5 of 10)	-23026.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	4.34365956625257	4.38748161698472	3.69040232907974	3.7681048319442	4.27770860012334	3.74861684588799	3.73531136281053	3.74767137841777	-0.464990183265454	0.372415337543162	0.67622116430777
Merged-chr3-9759291-4	chr3	9759199	9759399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 1 of 7)	intron (NM_053182, intron 1 of 7)	74380.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	6.8883885265652	6.33882020154951	6.8115953851907	7.19078699777747	6.16329843566084	6.19762800504983	6.72224420394507	6.72359099272641	-0.538819072722005	0.0493048802648906	0.229734419370164
Merged-chr9-108344349-6	chr9	108344282	108344482	+	920.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3449.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	3.44723287399192	3.8519847655927	3.7247886973556	3.16396623357696	3.48222893206702	3.79414778154506	3.60601157190774	3.81852570338325	0.348313856833876	0.514589143038945	0.777136383820736
Merged-chr2-167689877-6	chr2	167689815	167690015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110334)	promoter-TSS (NR_110334)	-844.0	NR_110334	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	6.24081790781144	6.03683769626298	4.87524870668409	5.51303752523857	6.0270349457909	6.10804712149426	5.98654283393305	5.81417038197976	0.359068399456193	0.31261090203594	0.62451046865229
Merged-chr11-4705140-2	chr11	4705040	4705240	+	792.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197979)	promoter-TSS (NM_197979)	484.0	NM_001356390	67178.0	Mm.271056	NM_026015	ENSMUSG00000009076	Zmat5	2610510L01Rik|D11Bwg0572e|D11Bwg1548e	zinc finger, matrin type 5	protein-coding	2.60454586517915	2.64393598157262	2.45704037055296	2.39317283820545	2.62067992378274	2.9107906340938	2.78899171673511	3.01994558665973	1.57991481578747	0.0180305773972643	0.119307581722399
Merged-chr5-103778423-4	chr5	103778344	103778544	+	799.229126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	23871.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	4.37132118295877	3.95821290924468	4.12609428067797	4.01367377397258	4.13343986486572	4.15602112009485	3.74897063473676	4.029785004296	-0.233916883529909	0.592025694460373	0.821919268747471
Merged-chr10-63236024-4	chr10	63235923	63236123	+	866.8875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-7774.0	NM_030114	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	4.50215991011505	4.64991808936503	4.50288978161758	3.92057938536746	4.50829590534314	4.26613182358416	4.31426282534491	4.5389176785369	0.01321093746356	0.975079733502789	0.991106419589236
Merged-chr6-97523325-4	chr6	97523228	97523428	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-35508.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	5.22837230153115	5.19888750808982	4.49272172905424	4.67975636349854	5.17937184139929	5.12214015938039	4.61239875794625	4.94508082241077	0.106969392395356	0.778447342341153	0.913745806756274
Merged-chr8-71404986-4	chr8	71404903	71405103	+	880.595825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026636)	TTS (NM_026636)	-1009.0	NM_001310502	234396.0	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	4.13268645535291	4.82192811803642	4.69841554914079	4.43840511516214	4.16186153820391	4.51070410627903	4.44726143247797	4.62301205345886	-0.243853527790452	0.549255457443936	0.797926160923547
Merged-chr8-83977021-2	chr8	83976921	83977121	+	713.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001277898, exon 1 of 10)	5' UTR (NM_001277898, exon 1 of 10)	138.0	NM_001277898	18747.0	Mm.19111	NM_008854	ENSMUSG00000005469	Prkaca	PKCD|Pkaca	protein kinase, cAMP dependent, catalytic, alpha	protein-coding	2.44343137792867	2.50852201624601	2.5044219505004	2.12187261052048	2.44866875485045	2.1893778739581	2.16313194206303	2.24169097948635	-0.782896280747577	0.331541317340932	0.642627926701357
Merged-chr6-92988740-3	chr6	92988643	92988843	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	48161.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	6.02250621719258	5.71912396086198	6.65543011978615	6.32084160544589	3.89138023666035	4.29719542787308	4.19838697033926	4.21462108878497	-4.56701888557332	2.09388012012539e-22	9.49301229747802e-20
Merged-chr17-29841901-4	chr17	29841804	29842004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081160, intron 9 of 15)	intron (NM_001081160, intron 9 of 15)	45978.0	NM_001081160	74762.0	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	6.42298473342806	6.44285533713639	6.07639113922238	6.57901041545666	6.24557329003657	6.23173047278614	6.53389114837965	6.04965215363219	-0.192906371690067	0.428712012686951	0.719619064235486
Merged-chr8-68881435-4	chr8	68881307	68881507	+	693.458374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008509, intron 1 of 9)	CpG	852.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	3.17436972260439	3.07174363244363	2.9062462328325	3.37220576979519	3.23212448685336	3.40388278766729	3.38332537826838	3.34354127289924	0.669790858660032	0.246952435635211	0.558168726560377
Merged-chr6-146272488-3	chr6	146272391	146272591	+	880.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 37 of 56)	intron (NM_019923, intron 37 of 56)	229732.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	3.60065793798131	3.36983808464748	3.69551011512468	3.45433309402032	3.49041437747437	3.24481236945855	3.48511479465474	3.20082472407591	-0.556637466130188	0.294532488759066	0.606705576837552
Merged-chr17-43052624-3	chr17	43052523	43052723	+	988.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	36068.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	4.60960172915305	4.42999734345937	4.50097351479033	5.09389822093173	3.60346863268877	4.00461170576262	3.97822682843201	3.87569688420151	-2.17443336583694	2.68708904461507e-06	8.55768729783695e-05
Merged-chr8-126581004-4	chr8	126580910	126581110	+	949.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	12426.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	4.66232395738228	4.59733172346689	4.62336906175822	4.58276831436644	4.79597618906581	4.53459773539061	4.75245943736899	4.87497012292846	0.291892203434877	0.389923429604507	0.690126622334056
Merged-chr5-120528495-4	chr5	120528401	120528601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 12 of 13)	PB1D7|SINE|Alu	17309.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	4.7477802730062	4.84618810375511	5.01071723183378	5.52870325249371	4.92646138091621	4.60680617495312	4.91733059869285	5.30693601666495	-0.245490659266058	0.523216804778082	0.782449675195448
Merged-chr9-59749719-4	chr9	59749577	59749777	+	970.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172069, intron 1 of 2)	intron (NM_001172069, intron 1 of 2)	972.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	4.88919875953961	4.81266828204721	4.46223249939994	4.8079142142449	4.75444181718229	4.33799577327814	4.57276473182098	4.95092276847922	-0.164524715362582	0.656084376779479	0.856430271691361
Merged-chr4-148060478-3	chr4	148060361	148060561	+	775.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010840)	TTS (NM_010840)	19272.0	NM_001161798	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	3.2582681153924	3.20232650135088	3.31984994144972	3.14535945092994	3.21099071332146	3.09549191102002	3.94339635357544	3.63444416270614	0.972206376408349	0.092751300977912	0.333238914384829
Merged-chr12-88472161-4	chr12	88472041	88472241	+	950.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_1-LTR_MM|LTR|ERVK	-94818.0	NR_045888	71818.0	Mm.490789	NR_045888	ENSMUSG00000113434	3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	5.15639255308944	5.10417801978388	5.40608066556809	5.03217082575494	4.64419964923248	5.02366590403096	4.74436172096556	5.05850788481749	-0.594720549971271	0.0730599968501331	0.290914139365301
Merged-chr10-61176024-3	chr10	61175924	61176124	+	925.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017407, intron 2 of 3)	intron (NM_001017407, intron 2 of 3)	762.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	3.47280334932409	3.78322587917825	3.53531750450401	3.51472988535113	3.86052963420665	3.65280986966875	4.05476300104339	3.98917538839165	0.944244479320775	0.0438018835441152	0.213122856571644
Merged-chr15-93337048-4	chr15	93336955	93337155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028315)	promoter-TSS (NR_028315)	-120.0	NM_024189	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	7.40728788345056	7.82069618078029	7.60121059764069	7.40131497501526	7.42961039872213	7.7084238511236	7.52946471518742	6.89774827167516	-0.190518814083105	0.397118687646725	0.695612493933522
Merged-chr11-114883027-4	chr11	114882931	114883131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7010.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	6.10476236961467	5.97069546585801	5.84881608229626	5.50834937731472	5.89484659562424	6.02435945236535	5.79521730954393	6.06215483710227	0.141306672726888	0.600670883114961	0.826905575654962
Merged-chr8-83773326-3	chr8	83773219	83773419	+	940.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-32008.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	3.91679224271356	3.71073725253623	3.48048937655145	3.78769149040174	3.36156458794916	3.53616872780827	3.40912387848286	3.3577536698249	-1.06726765955926	0.0359564304265719	0.188408538512677
Merged-chr2-3726834-6	chr2	3726703	3726903	+	996.0476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	13345.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	5.3865410982792	4.85451827640585	5.24390819376253	5.6368339702962	5.13527719395417	5.11368138735077	5.02260226491913	5.17800462129401	-0.395308423069169	0.234002339581623	0.543711318439654
Merged-chr18-65707326-2	chr18	65707226	65707426	+	753.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_177028, exon 2 of 15)	exon (NM_177028, exon 2 of 15)	9058.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	3.22065199750976	3.28653088761363	3.32959353053278	3.06599200467417	2.79989234495719	3.21481171626931	2.89428263121937	3.32759503366048	-0.604162396173053	0.323165592608068	0.63466673307741
Merged-chr14-62001766-4	chr14	62001657	62001857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	291222.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	6.211432130805	6.07303806155766	6.97295021138233	6.98835514610828	5.65884485117602	5.86597859108584	5.9673174250655	6.16800225865352	-1.07870442996125	0.000412662614551258	0.00660065443621214
Merged-chr15-80711147-4	chr15	80711041	80711241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144812)	promoter-TSS (NM_144812)	-172.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	8.14769488558179	8.12318367697554	7.74609996228431	7.77084424779327	7.98791829654091	8.17524195682382	7.84021936051741	7.62948909423241	-0.042854766909555	0.828666182082422	0.934216547736585
Merged-chr10-93095380-4	chr10	93095283	93095483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13787.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	6.04545791063895	6.14562850392023	5.71811833179213	5.37954295033724	7.07373617414377	7.46021750773146	7.26478214139851	7.14318796957421	2.04111973230015	8.48976665107407e-16	1.54946948835077e-13
Merged-chr5-114859502-2	chr5	114859402	114859602	+	649.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026263, intron 2 of 11)	intron (NM_026263, intron 2 of 11)	5788.0	NM_026263	67593.0	Mm.251409	NM_026263	ENSMUSG00000029564	4930519G04Rik	1700014B12Rik	RIKEN cDNA 4930519G04 gene	protein-coding	3.78489767858753	3.67435267987839	3.33643281381841	3.37288977676069	3.72116838995073	3.75289529189834	3.61988141612787	3.78315030713106	0.542542619836532	0.268393307290755	0.580107684368438
Merged-chr17-50509680-5	chr17	50509643	50509843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013880, exon 1 of 6)	exon (NM_013880, exon 1 of 6)	196.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	5.22723971410248	6.00043957037999	5.44988480911563	4.84094179425246	5.64220808220084	5.81317677234583	5.33267129230004	5.79905354149569	0.363132210646573	0.310945388855975	0.623003793544621
Merged-chr7-29162995-3	chr7	29162892	29163092	+	831.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_182927, exon 5 of 6)	exon (NM_182927, exon 5 of 6)	5655.0	NM_182927	101809.0	Mm.377262	NM_182927	ENSMUSG00000037239	Spred3	AW047143|D130060H24Rik|Spred-3	sprouty-related, EVH1 domain containing 3	protein-coding	3.73338997016224	3.63905706997321	3.60108055908374	3.1583177669862	2.9887540922731	3.20502448804927	2.93824835942183	3.15695028375461	-1.83019784421584	0.00309668959402757	0.0327712263772358
Merged-chr5-146293523-4	chr5	146293419	146293619	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153599, intron 7 of 12)	intron (NM_153599, intron 7 of 12)	62269.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	5.59392320110231	5.64386437125587	5.94586620054893	6.22928040600458	5.52069508000073	5.25361024960942	5.61913114012743	5.4180426753343	-0.725772496517725	0.014842932548346	0.104067282637677
Merged-chr18-36530045-3	chr18	36529913	36530113	+	843.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271546, exon 5 of 22)	exon (NM_001271546, exon 5 of 22)	1861.0	NM_001271545	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	3.59489111773506	3.72933100124547	3.89266506013153	3.43115357375498	3.44620881830709	3.59553828762697	3.83046017751379	3.70017326735403	-0.0506753441579633	0.918914563894299	0.970206178702864
Merged-chr11-88718473-4	chr11	88718353	88718553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201341)	promoter-TSS (NM_001201341)	-186.0	NM_001201341	76626.0	Mm.400451	NM_054043	ENSMUSG00000069769	Msi2	1700105C15Rik|AI451722|AI563628|AW489193|Msi2h	musashi RNA-binding protein 2	protein-coding	6.68298303087754	6.84761195950271	6.65328850029804	6.77349634337575	6.89935080192998	6.79827179605306	6.80712591046556	6.7095463106515	0.089991272472383	0.648090803108453	0.851973023337718
Merged-chr16-23984378-4	chr16	23984290	23984490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	-3107.0	NM_001348026	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	5.62249250737531	5.67814381967286	5.08536351471192	5.57657728280902	5.84427635705171	5.63411834291249	5.54264536223843	5.78839165581988	0.328274860080366	0.250201267710414	0.561249063980067
Merged-chr17-28419809-3	chr17	28419685	28419885	+	787.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 5 of 10)	intron (NM_010220, intron 5 of 10)	-54569.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	3.49964014294132	3.05963873351114	3.44914641633881	3.17308653839685	2.99196974306926	3.45610325610659	3.38200929342814	3.39404333498391	0.0432290229045364	0.939821985367976	0.978334660726665
Merged-chr11-96937729-2	chr11	96937629	96937829	+	661.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_134021)	TTS (NM_134021)	6290.0	NM_134021	103711.0	Mm.254704	NM_134021	ENSMUSG00000018659	Pnpo	AI415282	pyridoxine 5'-phosphate oxidase	protein-coding	3.09446864717095	3.35908987409993	3.22346217847384	3.03305139078936	3.36642995620659	3.45520510652513	3.43368024452691	3.44620544033804	0.90505943976696	0.0859838643297714	0.319577250946843
Merged-chr4-126438513-4	chr4	126438397	126438597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001317173, exon 19 of 19)	3' UTR (NM_001317173, exon 19 of 19)	-8955.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	6.34105010812103	6.46759041903726	6.73319719420056	6.50758999501923	6.51900500369311	6.97624588617334	6.51933172065319	6.39364638715809	0.141522801257581	0.544854789285013	0.795549017344313
Merged-chr12-99627993-4	chr12	99627888	99628088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045288)	promoter-TSS (NR_045288)	-14.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	7.6590024361547	7.74715196433318	8.02309717259392	7.94264370249549	8.04999970419399	8.04720923608708	7.99773143290006	7.91527506904576	0.193493213650299	0.253554633390161	0.564890375536131
Merged-chr5-90931252-4	chr5	90931150	90931350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026788)	promoter-TSS (NM_026788)	54.0	NM_026788	665563.0	Mm.153030	NM_026788	ENSMUSG00000029376	Mthfd2l	1110019K23Rik|C630010D07Rik	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	protein-coding	7.25485659459228	7.46052696880789	7.13321749359812	7.43565545390535	7.15017861950112	7.26259962743182	7.27175242484606	6.71539776825155	-0.292326220541655	0.162330508772813	0.451507298813648
Merged-chr10-13965708-4	chr10	13965659	13965859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010437)	promoter-TSS (NM_010437)	-316.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	7.44008267647642	7.7288499872072	7.93007150122064	7.82052898657092	8.00441196673549	7.87862015359559	7.99849445442399	7.94547789392109	0.276554384553617	0.117124155013389	0.378565658581541
Merged-chr9-70834807-4	chr9	70834718	70834918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	99990.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	7.05128337008471	7.49450792985622	7.13885689795761	7.51503817477598	7.26063875011608	7.2301350421007	7.39804010886203	7.44841935160876	0.00857416653343497	0.966036385519476	0.988022131369328
Merged-chr4-105226449-4	chr4	105226347	105226547	+	865.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 5 of 5)	intron (NM_080555, intron 5 of 5)	69100.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.44067438542186	4.33197948410123	4.56602138718706	4.54772074150977	4.17564288911084	4.43315342130273	4.54460125692504	5.02144760048479	0.219820791394129	0.587671830154487	0.819326924567384
Merged-chr8-94584592-4	chr8	94584468	94584668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028221, intron 5 of 7)	intron (NM_028221, intron 5 of 7)	17158.0	NM_028221	102122.0	Mm.250425	NM_028221	ENSMUSG00000031774	Fam192a	1700001O11Rik|2310065K24Rik|AI596259|Nip30	family with sequence similarity 192, member A	protein-coding	5.92330664782885	5.88520872858198	5.7372370395987	5.99460030117981	6.03665244677815	5.2427160441397	5.87229984462017	5.7581170294461	-0.194426636699028	0.494625986628017	0.765224301099017
Merged-chr11-94388890-3	chr11	94388775	94388975	+	704.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	4101.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	3.51502890016613	3.10032131361998	3.21709250843894	3.1450175829337	2.92273494803811	3.0801464845184	3.08853462024419	3.03521618476114	-0.886075741611594	0.130223731257183	0.401654049047651
Merged-chr5-30232521-4	chr5	30232420	30232620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_137634)	promoter-TSS (NR_137634)	-61.0	NM_027652	28042.0	Mm.168854	NM_027652	ENSMUSG00000075703	Selenoi	4933402G07Rik|AI448296|AI452230|C79563|D5Wsu178e|Ept1|SELI|mKIAA1724	selenoprotein I	protein-coding	8.52632091258222	8.43055431379075	8.35343758498907	8.46476419375209	8.11574445705302	8.34106969040713	8.05455605631114	8.01307404420607	-0.395087463552066	0.0130400236261133	0.0951975222239095
Merged-chr7-71785176-3	chr7	71785067	71785267	+	919.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124528.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	4.47042821026039	3.81176421911872	4.79626072637827	5.37920774084235	3.27016783180073	3.36494259678732	3.38892874648434	3.47595232228752	-4.43956117393091	9.62111593747138e-10	6.19747883541426e-08
Merged-chr4-8290087-2	chr4	8289987	8290187	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51046.0	NM_007592	12319.0	Mm.119320	NM_007592	ENSMUSG00000041261	Car8	AW546993|Ca8|Cals|Cals1|Carp|wdl	carbonic anhydrase 8	protein-coding	3.60191955401896	3.26373205803581	3.78471179159461	2.74582861513886	3.41302409078484	3.3209445219857	3.53675591330185	3.26760142012395	-0.0837287206294588	0.896026325354245	0.960994089571403
Merged-chr11-72221440-4	chr11	72221295	72221495	+	888.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5803.0	NM_026068	67279.0	Mm.159496	NM_026068	ENSMUSG00000020801	Med31	3110004H13Rik|CGI-125|l11Jus15	mediator complex subunit 31	protein-coding	3.2031553198358	3.42112761746762	3.20354430762202	3.20414861936174	3.22778939132553	3.25185540340746	3.35984360487408	3.31748463797442	0.105903250140495	0.841215558456536	0.939569455112003
Merged-chr8-125278461-1	chr8	125278361	125278561	+	812.333313	f0_balb.idr	Intergenic	Intergenic	214372.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	4.04473933127727	4.23273774934851	3.9255707721491	3.57318043054025	2.9061715741906	3.10963093138265	3.06243193721359	3.07017276878767	-4.06246412665823	2.26299345257946e-07	8.99372478845079e-06
Merged-chr10-56115315-4	chr10	56115177	56115377	+	988.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163833, exon 2 of 2)	exon (NM_001163833, exon 2 of 2)	8360.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	4.76618688736022	4.7212028605396	4.64755274878275	4.69159085713172	4.66986567521869	4.78188876899319	4.88673273903841	5.20706871507605	0.390554131279217	0.253459524788358	0.564765683276764
Merged-chr7-35157690-3	chr7	35157603	35157803	+	975.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28682.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	4.31242638299854	4.62932602173668	4.79493411564273	4.59016826789695	4.20692358303023	4.07666202108549	4.20144863900568	4.11644969720083	-1.0532269813321	0.00786606464645382	0.0664320298432713
Merged-chr1-131277016-4	chr1	131276922	131277122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019777, intron 2 of 21)	intron (NM_019777, intron 2 of 21)	2541.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	7.41324556514542	7.59193133394597	7.03982827949554	6.43108535106249	7.5874750071039	7.6745037224608	7.52941231980943	6.92779004928948	0.369849627705821	0.195950007103123	0.496883703441154
Merged-chr13-44540596-3	chr13	44540485	44540685	+	681.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100858.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	3.54125600181359	3.48536760362376	3.43915236575464	3.14498317184344	3.40688244847362	3.25144537220668	3.47686554826658	3.13869002435267	-0.260838932721628	0.634618145847354	0.845322248690398
Merged-chr14-27190347-3	chr14	27190249	27190449	+	923.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	46356.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	3.91866457995549	3.67640853628433	4.00987432581463	4.26194842482655	3.71006140083422	3.45194482731559	3.805863297786	3.7677944676337	-0.881608217826462	0.0727723834685718	0.290204800431928
Merged-chr16-65201480-4	chr16	65201374	65201574	+	992.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95690.0	NM_008310	15557.0	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding	6.19757697303985	6.01580319787803	6.18079054194423	6.08981606871362	5.69525700275986	5.68492935395396	5.72644346421682	5.22982420820361	-0.835190371457184	0.00149977642642983	0.0186728329992739
Merged-chr16-91461400-4	chr16	91461318	91461518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie7|DNA|hAT-Charlie	-3686.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	6.51976204753051	6.09447746095908	6.39737263081524	6.63362347965229	5.86104455433378	5.97663659939523	5.96366727502536	5.79771265542088	-0.837612794573454	0.000741015362260442	0.0105891853985818
Merged-chr15-57793182-4	chr15	57793022	57793222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 2 of 3)	intron (NM_199449, intron 2 of 3)	98455.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	5.33091917316133	5.65969676483273	5.65931531471157	5.92212765814991	5.89911041522412	5.86038042881404	5.77834171692275	5.8268713972493	0.263816778525551	0.334175721998033	0.644805241742718
Merged-chr19-10949785-4	chr19	10949675	10949875	+	952.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023731)	promoter-TSS (NM_023731)	-509.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	4.24442419385833	4.1882336382377	4.15201895380087	4.33489304857834	4.64799048859467	4.00780453112228	4.13442342232054	4.32905871747613	0.196710755273381	0.638919662776121	0.847409779354821
Merged-chr4-43712080-2	chr4	43711980	43712180	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5514.0	NM_019486	56015.0	Mm.377126	NM_019486	ENSMUSG00000046450	Olfr71	MOR262-4|mOR17	olfactory receptor 71	protein-coding	2.9504844379568	3.20068291360972	2.95082806719911	2.79403804798445	2.842516866622	3.12534778739779	3.12034132162528	3.2394383326451	0.447137580339266	0.457846849768823	0.740862073979297
Merged-chr9-21320694-4	chr9	21320598	21320798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199186)	promoter-TSS (NM_001199186)	-21.0	NM_001359227	68682.0	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	6.66551084158513	6.79322658709888	6.78733684853882	6.78002303908556	6.93129372177782	6.93502517257063	6.97530643993179	7.06449323429573	0.302454123388466	0.111545288509329	0.369064383898366
Merged-chr16-14112959-4	chr16	14112861	14113061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081154, intron 26 of 26)	intron (NM_001081154, intron 26 of 26)	46313.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	5.92785350872182	6.160686874893	5.99662711765095	6.2305186495535	6.14724592760231	6.03403880709179	5.75234865572441	6.1176869526077	-0.109235875146047	0.658788149110123	0.858011574025715
Merged-chr15-67174727-4	chr15	67174650	67174850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 1 of 8)	intron (NM_009177, intron 1 of 8)	2132.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	6.29757729839363	6.67833388063087	6.17648423350421	6.55615432050075	6.36333242269415	6.56864496042904	6.58848713738684	6.64722313212912	0.125120387435531	0.588004419589121	0.819453090199394
Merged-chr16-20538110-4	chr16	20538008	20538208	+	965.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302970, intron 2 of 10)	intron (NM_001302970, intron 2 of 10)	2628.0	NM_009679	11773.0	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	4.53418417213378	4.87457082466817	4.65794417719572	4.63256191889374	4.60802119021247	4.57666653302604	4.59694382867816	4.86994478592279	-0.0293130150640712	0.933240584517371	0.975936701173319
Merged-chr7-31110977-1	chr7	31110877	31111077	+	1000.0	f0_c57.idr	promoter-TSS (NM_001276269)	promoter-TSS (NM_001276269)	20.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	6.52339439746059	6.7927116151286	6.90979167706909	6.37305100125938	6.60309529356128	6.82731525661797	6.4913469775788	6.45135364730352	-0.080141915551191	0.732500448970805	0.893963778565797
Merged-chr5-103644363-3	chr5	103644256	103644456	+	820.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	11368.0	NM_028824	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	3.57478911150192	3.44028172050077	3.71684959699086	3.76437114802973	3.16660498219025	3.34109919661369	3.45683527470852	3.35415357088589	-1.09885684801201	0.0376496940462576	0.193940336699853
Merged-chr4-128787560-4	chr4	128787455	128787655	+	888.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 4 of 8)	L1ME4c|LINE|L1	18557.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	3.91041453360298	4.22446024797417	3.56579160976706	3.74574746879016	4.78345844860934	4.67637805403914	4.93674368164592	4.74998094931948	2.15785681758933	2.9899217081753e-07	1.15978003959787e-05
Merged-chr10-54052625-4	chr10	54052549	54052749	+	955.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 2 of 12)	MTD|LTR|ERVL-MaLR	23147.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	5.52125856482369	6.18647107053556	5.46311121720848	5.40503399677923	6.0705926292286	5.93351944287685	5.70535142139788	5.15455258315642	0.13354579820954	0.698620999416131	0.87846280702812
Merged-chr1-94058503-4	chr1	94058399	94058599	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-5946.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	5.54781040798315	5.00428539753043	6.07123606843865	5.34047958054103	4.26920027728896	4.82996345384874	4.88045442334921	5.21694421992728	-1.32207979562562	0.00124968265510062	0.0160939319173887
Merged-chr11-54801967-4	chr11	54801868	54802068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14265.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	6.52647462108563	6.56525083921497	6.5276226415959	6.65291753601009	6.79481757750722	6.76875498334253	6.72223054259669	6.48915444812783	0.182471387660812	0.376989080541727	0.679609608040715
Merged-chr6-129922874-1	chr6	129922774	129922974	+	674.0	f0_balb.idr	Intergenic	IAPEY3-int|LTR|ERVK	-9650.0	NM_008463	16636.0	Mm.14111	NM_008463	ENSMUSG00000030173	Klra5	Ly49e	killer cell lectin-like receptor, subfamily A, member 5	protein-coding	3.11066081087797	3.34393326466606	3.26212736758733	2.77232676780787	2.53669735347217	2.62253491974202	2.50851597592047	2.66971989828505	-2.99960056185437	0.000241278665059551	0.00424048743216637
Merged-chr10-96015943-4	chr10	96015829	96016029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001932, intron 13 of 28)	intron (NM_001001932, intron 13 of 28)	75266.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	7.19883019201334	7.27037677106958	6.8346168376221	7.0953171198109	6.99972421443682	6.89310816155583	6.75746113183397	6.75742890002704	-0.348531279215669	0.0878496520247132	0.323291404512771
Merged-chr8-122551491-6	chr8	122551419	122551619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357349)	promoter-TSS (NM_001357349)	-190.0	NM_001357349	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	6.59254722741847	6.8463602156761	7.19116838979057	6.54026029148943	6.47937316291575	6.68841601018124	6.19406672492181	6.54021594208496	-0.467066149889678	0.0593711064213636	0.256820175263825
Merged-chr1-75521872-4	chr1	75521783	75521983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027886, intron 2 of 24)	CpG-327	354.0	NM_027886	71728.0	Mm.312650	NM_027886	ENSMUSG00000026213	Stk11ip	1200014D22Rik|BB131189|LIP1|LKB1IP	serine/threonine kinase 11 interacting protein	protein-coding	6.15245111459261	6.44748559688838	6.54448172073108	6.05573138691583	6.0248353794827	6.64058240567595	6.07990714377933	6.44473920620327	0.0110963072514394	0.966594211707602	0.988217650432256
Merged-chr19-4811171-4	chr19	4811086	4811286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019869, exon 1 of 3)	exon (NM_019869, exon 1 of 3)	448.0	NM_001290127	102902673.0	Mm.426069	NM_001290127	ENSMUSG00000096370	Gm21992	Rbm14-rbm4	predicted gene 21992	protein-coding	6.15688905635862	5.8654704229792	5.85820883478326	5.84552437319348	5.93456029760857	6.40530568928322	5.89847579069918	5.92448768506025	0.190416837480642	0.462411119723535	0.743936014528885
Merged-chr1-172566451-3	chr1	172566346	172566546	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	6540.0	NR_027644	240916.0	Mm.71940	NM_177723	ENSMUSG00000049598	Vsig8	A030011M19|EG240916	V-set and immunoglobulin domain containing 8	protein-coding	3.80977143937328	3.97146670873537	3.81035160255859	2.46221796888207	6.18424151658748	6.6686309968147	5.81245164591689	5.3029365505746	5.54468539466097	6.85889568478289e-06	0.000196779256730013
Merged-chr9-110476754-5	chr9	110476670	110476870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010628)	promoter-TSS (NM_010628)	-76.0	NM_177771	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	5.998077270594	5.93839276827673	5.82764900422422	5.48485037112317	5.55046667176847	5.75064772148464	5.51789433374834	5.80032688210879	-0.257019108853982	0.357812389946968	0.663866486000028
Merged-chr2-5035909-4	chr2	5035813	5036013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 7 of 13)	ID_B1|SINE|B4	-23122.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	5.85818975397074	5.48877190574193	5.56573889787369	5.63183733850218	6.2264915436419	6.19103393749669	6.10484446163164	6.35866140898805	0.925575742711956	0.000152742302936189	0.00289381005608065
Merged-chr16-8831667-2	chr16	8831567	8831767	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081400, intron 2 of 3)	intron (NM_001081400, intron 2 of 3)	1567.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	3.17273763653679	3.16156036023263	2.98513028267148	3.10808644626535	3.04569303451954	3.28481553850425	3.10237324371491	3.38552342319054	0.37720009328159	0.499126713748688	0.768207716806231
Merged-chr11-51967611-4	chr11	51967509	51967709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029976)	promoter-TSS (NM_029976)	-22.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	6.83179086682578	6.40584499072401	6.24151188897171	6.55811605416874	6.86122963535237	6.74801474379797	6.66045529990649	6.61446866611714	0.288843707508243	0.199071226735912	0.500890482089698
Merged-chr17-48325911-4	chr17	48325830	48326030	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177083, exon 6 of 6)	3' UTR (NM_177083, exon 6 of 6)	9768.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	5.82848586247966	6.11599211192368	5.96048076934814	6.00050119589676	5.52445705612788	5.72440298013256	5.23316882741003	5.51420368451866	-0.787877913034365	0.00313617345824068	0.0330661665803752
Merged-chr11-114667819-4	chr11	114667714	114667914	+	810.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023372)	promoter-TSS (NM_023372)	-729.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	3.24047159218191	2.89955970244064	3.04959771176978	3.06095854866578	3.29912330097536	3.52474717515139	3.2858672479314	3.5988624636306	1.34320979203982	0.0150817699164896	0.105245617733903
Merged-chr18-39010233-3	chr18	39010146	39010346	+	956.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 1 of 21)	intron (NM_001361073, intron 1 of 21)	17101.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	3.84192043527399	3.69260178185487	4.06574771990202	4.17065808894241	3.73941303000873	3.34620855946945	3.61699672980749	3.79048286515322	-0.962437812871424	0.0562813023102964	0.248413779489107
Merged-chr17-65907184-4	chr17	65907073	65907273	+	947.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-21418.0	NM_009067	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	4.40877715005965	4.52614192197105	4.93367248404408	4.65498292939895	4.55617922468047	4.75522640365979	4.5613812245534	4.45215811511261	-0.134627738350775	0.712633723855792	0.88495186291337
Merged-chr19-42778092-3	chr19	42777988	42778188	+	843.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362410, intron 2 of 16)	intron (NM_001362410, intron 2 of 16)	558.0	NM_001362410	192236.0	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding	3.40532812727539	3.27502681388414	3.45571983465523	3.26341584170046	3.32761403974691	3.02397104225177	3.04744165253393	3.18228276499706	-0.710507001452907	0.208427004945834	0.512722508555021
Merged-chr11-80382969-1	chr11	80382869	80383069	+	575.0	f0_balb.idr	promoter-TSS (NM_011751)	promoter-TSS (NM_011751)	-310.0	NM_001130169	22680.0	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	4.30132984850698	4.45671489014517	4.59211672220922	4.37289071060548	4.26249701163162	4.56431420960456	4.28325355379889	4.55150248893436	-0.0351419143588472	0.925908079691273	0.972707719010402
Merged-chr9-111033984-4	chr9	111033894	111034094	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008522, intron 13 of 16)	RSINE1|SINE|B4	14702.0	NM_008522	17002.0	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	4.6280315946802	4.76227529443707	4.92453040268061	4.67690959930189	5.06704695596494	4.80365223087375	4.52251939915002	4.7063184743636	0.1153106657737	0.743649944457754	0.899015920998649
Merged-chr11-80183860-4	chr11	80183771	80183971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028019)	promoter-TSS (NM_028019)	-1.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	6.3198075825011	6.11359383903312	5.85331736899628	5.7963140120931	6.10828550332123	6.19036037381866	6.21905128428399	5.69246244966791	0.0673528185381509	0.802134733977381	0.923733899390227
Merged-chr3-27192020-4	chr3	27191919	27192119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	9015.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	6.37658117452753	6.57538912681133	6.61938619805968	6.93286204049894	6.8228138593199	6.53650096168889	6.67609291879399	6.77644826228728	0.0740039749222233	0.745154840805995	0.899431814827356
Merged-chr7-127967307-4	chr7	127967246	127967446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347649)	promoter-TSS (NM_001347649)	-133.0	NM_001347649	233908.0	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	7.18480819518414	7.4887593875114	7.29617249284866	6.96025012589607	7.40123047695011	7.67688233307199	6.85400926604819	7.69303977210481	0.275502266254387	0.252323194361083	0.563645884616847
Merged-chr12-3771275-4	chr12	3771164	3771364	+	871.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027869, intron 16 of 20)	intron (NR_027869, intron 16 of 20)	-35716.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	3.84010931897408	4.20281538845807	3.42353587346834	3.63584287680811	4.00537209150964	3.79701647162735	4.1366230327589	3.78631146896722	0.376993152315436	0.451631383826987	0.736177668935835
Merged-chr11-118459314-4	chr11	118459243	118459443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER73|LTR|ERVL	-4348.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	7.43530512846785	7.36699251194465	7.99740946948129	7.86981077781962	7.38434814422017	7.00940836878624	7.8477604365439	7.45092824322821	-0.31678305772882	0.190101971957644	0.489188726563073
Merged-chr15-59525948-4	chr15	59525840	59526040	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-122714.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	5.08707449596424	5.05352699049303	5.32797349950921	4.81915298259518	4.71010215799618	5.22898793012423	4.92467197617884	5.42878417931463	0.0408957737759685	0.907335155194565	0.965672468362175
Merged-chr2-90515119-4	chr2	90515003	90515203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-35929.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.12321470404387	6.63386656877096	6.40011045203417	5.99738918168842	5.93817924938705	6.19392535187561	6.05135878341962	5.94386316027839	-0.419096469493548	0.109023300240537	0.364549701123748
Merged-chr4-9122821-4	chr4	9122713	9122913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	-146480.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	7.26614852051481	7.2747077880722	7.37085666091848	7.30555030891633	7.46194397522205	7.41161457547029	7.24187063467994	7.31509931911149	0.0802550732233125	0.647987801662865	0.851923231151848
Merged-chr5-33358665-4	chr5	33358546	33358746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021500, intron 2 of 8)	intron (NM_021500, intron 2 of 8)	-20050.0	NR_153108	71101.0	Mm.132178	NM_027674	ENSMUSG00000037355	Uvssa	4933407H18Rik|D330017J19Rik|Kiaa1530|mKIAA1530	UV stimulated scaffold protein A	protein-coding	6.56806449972854	6.38398964593008	6.64391205495741	6.60261409769634	6.43172789516585	6.17304909462377	6.20430332614115	6.32818277891408	-0.380957252055746	0.0833858584674513	0.313866104783229
Merged-chr8-119826188-4	chr8	119826086	119826286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	14393.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	7.20987063099497	7.18969992569208	7.43580388836851	7.41597631071213	7.07274203580757	7.29554941115396	7.2715382186927	7.39271040465634	-0.0884218608734843	0.639322088142276	0.847559309975212
Merged-chr8-123357943-3	chr8	123357857	123358057	+	889.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172287, intron 6 of 14)	intron (NM_172287, intron 6 of 14)	-15754.0	NM_001359076	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	3.66925777789263	4.22888059698863	3.60720596353899	3.51271958327989	3.91074696115733	4.06976492519967	4.30774417721552	4.16987967525551	0.911828201959416	0.0603544986304962	0.259502269345037
Merged-chr1-60173311-4	chr1	60173211	60173411	+	947.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7288.0	NM_173444	269198.0	Mm.205224	NM_173444	ENSMUSG00000073664	Nbeal1	2310076G13Rik|A530050O19Rik|A530083I02Rik|AI662228|ALS2CR17	neurobeachin like 1	protein-coding	4.59748259129377	4.80068797633333	4.64001046778958	4.76653288300949	4.92822831921369	5.03637755856797	4.57770641269242	4.89791540203935	0.332271546706049	0.328139634938591	0.639557806004763
Merged-chr13-45105407-4	chr13	45105375	45105575	+	946.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103379.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	3.99476104257059	3.88490743598892	3.83206927503868	3.86584050709336	4.29554390889889	3.83313446443127	4.47518289887321	4.52833590293571	1.07106351372792	0.0133705935268949	0.0969446344759961
Merged-chr15-84988648-3	chr15	84988546	84988746	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033273)	promoter-TSS (NM_001033273)	-675.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	4.8162051048427	5.08391397671157	4.34645381565088	4.77047329172966	4.64912442368004	4.71466409358166	4.82895302096234	4.81377785250875	-0.0703092437914896	0.846237818387131	0.941927217035367
Merged-chr1-177795527-4	chr1	177795422	177795622	+	933.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007422, intron 1 of 12)	(A)n|Simple_repeat|Simple_repeat	987.0	NM_007422	11566.0	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	4.52001136319993	4.71940325806355	3.93079131376304	4.43065583432377	4.89644274918435	4.38680794014939	4.45982042188679	4.10206695310993	0.162500867572707	0.718351985487922	0.887534808097726
Merged-chr12-8942048-6	chr12	8941950	8942150	+	919.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5879.0	NM_010770	17182.0	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	3.80526709854994	3.56869827818184	3.90690170517547	4.07130325896453	3.94994717220246	3.75541488438968	4.11005418853468	3.85511941373724	0.174647975983059	0.708224350394683	0.882710273980338
Merged-chr8-25518735-4	chr8	25518635	25518835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010206)	promoter-TSS (NM_010206)	-24.0	NM_001079909	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	5.42117234298998	5.64255804782827	5.65752423048694	6.1230803804527	5.62754900329997	5.66425523748476	6.32744337857379	5.96207651936864	0.268954347200818	0.392651197273542	0.692059612348422
Merged-chr4-128617770-5	chr4	128617585	128617785	+	839.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_205823, exon 1 of 1)	exon (NM_205823, exon 1 of 1)	934.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	2.9762094682596	2.82237476814446	2.91719676329729	2.93674340152039	2.92938741491244	3.02485026234795	2.71350394534444	2.91575088898849	-0.0614353776473382	0.919040101484538	0.970266762337668
Merged-chr3-69699981-4	chr3	69699858	69700058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22097.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	6.65278725449577	7.17821155974356	6.5403832767807	6.66909767741923	6.92069065049768	6.75104371942524	6.7518264668048	6.3338478374153	-0.103839783794016	0.674372214743385	0.866144208984521
Merged-chr7-44891733-4	chr7	44891587	44891787	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331206, intron 3 of 16)	intron (NM_001331206, intron 3 of 16)	737.0	NM_001331208	75613.0	Mm.157778	NM_029365	ENSMUSG00000002968	Med25	2610034E13Rik|2610529E18Rik|ESTM2	mediator complex subunit 25	protein-coding	4.28156256453957	4.45857283948749	3.97602634343424	4.01411436785676	4.29668470767699	4.4565728010144	4.21722846243877	4.82520685344391	0.653235707221604	0.120855185219112	0.38496156935072
Merged-chr2-145804118-4	chr2	145804032	145804232	+	809.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	18016.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	3.98268884493621	3.73576653902242	3.93508032957343	3.82184337707627	3.64328608369818	4.15385929144738	4.05612114256268	4.0272414846685	0.299153883908645	0.507448935701717	0.772779370866763
Merged-chr11-58010406-4	chr11	58010344	58010544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028451, intron 1 of 18)	intron (NM_028451, intron 1 of 18)	1380.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	6.97330524736595	6.80270084408063	6.6542404558281	6.80756376591833	7.02436360458259	7.07466775428593	6.88929299107409	6.38618812280985	0.0851114503660892	0.709010130965773	0.883225679693603
Merged-chr10-115332611-3	chr10	115332516	115332716	+	981.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	-17025.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	4.2984490400657	3.83286096707562	4.54530677214864	4.26728204376886	3.54956312685504	3.64223546622491	3.87280692548978	4.03810674720872	-1.30028795326633	0.00761705438190626	0.0648533868241275
Merged-chr1-136127092-4	chr1	136127005	136127205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_046167)	TTS (NR_046167)	4078.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	5.89088185691764	5.8565608811249	5.79360974018127	6.11847160241443	6.04316100461673	6.26306336083993	6.07750882219821	6.04321997874566	0.261756340657902	0.285126611275525	0.596895004969872
Merged-chr10-127290648-4	chr10	127290545	127290745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007837)	promoter-TSS (NM_007837)	-148.0	NM_007837	13198.0	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	8.58238938339017	8.74485330558384	8.31257078770118	8.52393287578082	8.75119605572914	8.86082572333237	8.87153070872193	8.48082935509692	0.249433029022728	0.146383077888703	0.426622491137043
Merged-chr8-125733612-4	chr8	125733513	125733713	+	852.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310688)	promoter-TSS (NM_001310688)	-590.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	3.8626989644005	3.84417363074191	3.64344885949936	4.08421958995677	4.02401978189276	3.76138125710547	4.23138066015364	3.64161904754801	0.162957317178494	0.734639827155525	0.895086070816555
Merged-chr13-58481408-4	chr13	58481260	58481460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78017.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	5.881340444001	5.50277180936566	5.47589192191208	5.90619799404046	5.29240648682794	5.22551127653112	5.47615660063088	5.29049228346506	-0.683822181618116	0.0182539133976317	0.120450106770189
Merged-chr13-30744664-3	chr13	30744578	30744778	+	900.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4555.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	4.11625872641712	3.66260396524187	3.53957375255003	3.82606161281214	3.56518880347386	3.82955571087839	3.46562547071593	3.90485085997533	-0.309005162090905	0.537073118583705	0.790923655782789
Merged-chr12-25094682-9	chr12	25094576	25094776	+	920.3312380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010496, intron 2 of 2)	intron (NM_010496, intron 2 of 2)	1416.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	4.01082762128301	3.96392068815557	3.70595935487381	3.67773320953652	4.00614563364308	3.82500843163088	3.94812313955996	4.00896082790217	0.321766161888555	0.46734727111918	0.746968519290045
Merged-chr11-116617849-4	chr11	116617731	116617931	+	932.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	6421.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	5.04510040550244	5.08896919917438	5.3901699499584	4.74451714496918	5.25886763484189	4.84433221135871	4.64326364074628	4.90325291016597	-0.252081764073792	0.487200969852226	0.760600900973846
Merged-chr2-132151803-4	chr2	132151695	132151895	+	961.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-6475.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	4.82919528418891	5.42129063036854	4.99860773888412	3.73217965770246	4.60159414423826	5.14025147271733	4.61385724050643	4.30330988618994	-0.395905936426078	0.584107070098335	0.817543313050016
Merged-chr7-24134157-4	chr7	24134047	24134247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019941, intron 1 of 4)	CpG	1775.0	NR_153441	56525.0	Mm.295595	NM_019941	ENSMUSG00000047603	Zfp235	0610030O19Rik|AI428448	zinc finger protein 235	protein-coding	6.41484231979632	6.12834552986076	6.20337137495714	6.60473675651129	6.63720615480834	6.4818255781986	6.66704883851187	6.88044754848604	0.446541500143692	0.0576197291453475	0.251954460058772
Merged-chr16-4847258-3	chr16	4847159	4847359	+	976.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030192, intron 1 of 15)	intron (NM_030192, intron 1 of 15)	11843.0	NM_030192	78809.0	Mm.325551	NM_030192	ENSMUSG00000022518	4930562C15Rik	-	RIKEN cDNA 4930562C15 gene	protein-coding	4.26180816925803	3.70604586712402	4.3924520756638	4.69250027437552	3.97114052869179	4.24510369058504	4.69371200658857	4.30453795884948	0.0204752958663326	0.966699688648212	0.98824762144414
Merged-chr3-75861853-3	chr3	75861745	75861945	+	712.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	95104.0	NM_175193	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	3.46269113627606	3.50989413399066	3.88883177595462	3.80155275644284	4.03962814849232	3.6999686405167	3.56994910112256	3.74300125414231	0.296390027028108	0.551356055482327	0.798912376548186
Merged-chr8-26380854-3	chr8	26380761	26380961	+	911.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	222692.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	4.0600798039609	4.31880519753156	4.06068997660575	4.30084771793322	3.64717064095952	4.0337058928072	3.72890072585766	4.1488690272255	-0.812768843787265	0.0722469062701684	0.288848079526196
Merged-chr12-11209816-1	chr12	11209716	11209916	+	737.666687	f0_balb.idr	promoter-TSS (NM_019544)	promoter-TSS (NM_019544)	-868.0	NM_019544	56184.0	Mm.117113	NM_019544	ENSMUSG00000047002	Msgn1	Msgn|pMsgn1	mesogenin 1	protein-coding	2.91110832844756	2.79544550942193	2.91154635332224	3.23322268572255	2.26862828042769	2.39822494862529	2.52562543845587	2.37770546122121	-4.41085676572733	4.63440978071446e-05	0.00105830174456681
Merged-chr5-135570618-3	chr5	135570512	135570712	+	933.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019577, exon 3 of 3)	3' UTR (NM_019577, exon 3 of 3)	2437.0	NM_019577	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	3.19552800611707	3.09141080627482	3.73628112305884	3.45998599551144	3.220843594861	3.03480869786795	3.12283033312023	3.25400407135877	-0.85813035497844	0.145855825612687	0.42565232470349
Merged-chr12-55824224-4	chr12	55824127	55824327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2711.0	NM_001286263	56784.0	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	6.06822610322817	6.33196764802434	6.42398608843192	6.28345828836818	6.14690311173025	6.34820711047826	5.87859844483846	5.97570720228051	-0.28276435923869	0.242177328367628	0.552870202889105
Merged-chr16-30397164-2	chr16	30397074	30397274	+	956.366699	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8644.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	2.35595114402955	2.22947422187313	2.49678489722482	2.19353609644414	2.4918273664618	2.60394766244171	2.61324560118789	2.73801980301784	1.69540521202393	0.0175734720618181	0.117220707327162
Merged-chr18-75465149-4	chr18	75465069	75465269	+	692.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 10 of 11)	intron (NM_201354, intron 10 of 11)	-49476.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	3.94916272170113	3.8273214872539	4.08048921145275	3.5236541124062	3.56932426911513	3.87240961898372	3.6260157024378	3.94730035378279	-0.266180445493822	0.587778600225057	0.819357070175615
Merged-chr4-13756600-3	chr4	13756508	13756708	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111027, intron 1 of 11)	intron (NM_001111027, intron 1 of 11)	5311.0	NM_001111027	12395.0	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	3.94877333975246	3.94030709840657	3.80334314710223	4.4769713759729	3.27021714605197	3.63516166054291	3.73544979961482	3.57730459564447	-1.59318155509512	0.00254094925575289	0.0281016511925474
Merged-chr10-81406062-2	chr10	81405962	81406162	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 7 of 8)	intron (NM_026756, intron 7 of 8)	-3513.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	3.97858715513294	4.1481845716098	3.88138965351278	3.65809073382025	3.92387621629567	3.83891139393884	3.81411988724539	4.0674413441855	-0.00657632839634942	0.988455354084447	0.995447921566191
Merged-chr10-41883911-4	chr10	41883841	41884041	+	818.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	-3498.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	3.8021164894057	3.73112359026333	3.54108055119299	3.4659760733468	3.60275379960032	3.8741997495201	3.688933457055	3.53922544351718	0.142348159852894	0.768078266555699	0.909266558474345
Merged-chr11-86485174-4	chr11	86485072	86485272	+	813.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029788, intron 1 of 8)	CpG	515.0	NM_029788	76892.0	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	3.68877749261654	3.69485307811086	3.79576585074619	3.61226506339947	3.74181435467506	3.75121907244114	3.82948230886862	4.18520475156713	0.567139950106868	0.2162546613613	0.522764154900185
Merged-chr4-150087755-2	chr4	150087655	150087855	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177366, exon 1 of 4)	exon (NM_177366, exon 1 of 4)	252.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	5.65676948529121	6.09342024777742	6.44387055312105	6.05117672510014	5.53825868168685	5.77994103545045	6.07031806245877	5.88321588754521	-0.419864476918536	0.14085025833533	0.417402079106144
Merged-chr11-103966485-4	chr11	103966387	103966587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304574)	promoter-TSS (NM_001304574)	-238.0	NM_001304574	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	8.7452330116507	8.89214877735483	8.7466022105058	8.5778726218329	8.74841969503204	9.00968329092261	8.83021231969926	8.57088920927828	0.069757488699816	0.671996313379556	0.864986538211932
Merged-chr3-136368772-4	chr3	136368707	136368907	+	974.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42741.0	NM_001033350	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	5.172757246291	5.36837520302319	4.96048379490573	5.22969313863874	5.55379827073888	5.41130754659286	4.89823391385923	5.38053548787577	0.263118248596424	0.408505414005095	0.70438176546703
Merged-chr13-94154683-4	chr13	94154555	94154755	+	986.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	96859.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	5.47915449170489	5.24919525937973	5.6467486844799	5.7088621805378	4.9682136476726	5.11848251159931	4.9208835795327	5.15402854546956	-0.937603452287401	0.00215958323674705	0.0248170770436581
Merged-chr19-34921358-3	chr19	34921260	34921460	+	861.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362434)	promoter-TSS (NM_001362434)	-998.0	NM_001362434	240641.0	Mm.278471	NM_183046	ENSMUSG00000024795	Kif20b	33cex|C330014J10Rik|MPP1|Mphosph1|magoo	kinesin family member 20B	protein-coding	3.47901057793459	3.41715470557774	3.47955510001668	2.97945424658444	3.08017147755532	3.13381893890775	2.94399939839431	3.15093541423876	-1.04129898446433	0.0839310899055591	0.315024839083937
Merged-chr11-72550348-1	chr11	72550248	72550448	+	786.0	f0_balb.idr	promoter-TSS (NM_029932)	promoter-TSS (NM_029932)	-102.0	NM_029932	77577.0	Mm.46185	NM_029932	ENSMUSG00000020798	Spns3	9830002I17Rik	spinster homolog 3	protein-coding	3.2763151703849	3.45211312148242	3.73219451612217	3.44635783409785	3.26311686786659	3.38950585665898	3.20376637035305	3.21298108135402	-0.775233312094189	0.150202283696443	0.432790043591146
Merged-chr5-5275506-4	chr5	5275397	5275597	+	817.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-9429.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	4.02097323285725	4.06460530612421	3.91851112153684	3.78842428638338	4.14832197806465	4.70819895508944	3.90235019595605	3.86165161841119	0.649272648335075	0.162868943589038	0.452386191201286
Merged-chr11-29130764-4	chr11	29130711	29130911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027869)	promoter-TSS (NM_027869)	60.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	6.47587834398303	6.47149166248088	6.79075868966772	6.49994984691972	6.48035678666609	6.14357973824366	6.92611829184134	6.43795880348123	-0.0466385249868711	0.850609885564799	0.943633424218446
Merged-chr19-6274434-3	chr19	6274326	6274526	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2470.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	3.95250827147521	4.19870844565499	3.64673131614569	3.81401306075452	3.69829405565176	3.76495935995464	3.79323837856425	3.58606526197567	-0.602878138821957	0.204102983107967	0.507345773865619
Merged-chr7-69993149-3	chr7	69993049	69993249	+	608.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	344673.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	3.36960598768582	3.04058274039292	2.92995151596337	3.42845507487224	3.28486327269554	3.48431977390961	3.1876809995701	3.42036281734687	0.460381206052577	0.432760803055214	0.722611204268057
Merged-chr7-45366209-2	chr7	45366109	45366309	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015480)	promoter-TSS (NR_015480)	48.0	NR_015480	50994.0	Mm.389897	NM_016664	ENSMUSG00000091510	Mtag2	MAG	metastasis associated gene 2	ncRNA	3.49518179465691	3.36459803488517	3.38330335937595	3.22355362920229	3.5416690708858	3.43798914283889	3.18444197158799	3.86364580974045	0.564002067391499	0.292338974766771	0.604654036582073
Merged-chr9-102522513-3	chr9	102522425	102522625	+	862.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024291, intron 4 of 10)	intron (NM_024291, intron 4 of 10)	16387.0	NM_024291	16716.0	Mm.101692	NM_024291	ENSMUSG00000035606	Ky	CD1|D9Mgc44e|ky	kyphoscoliosis peptidase	protein-coding	3.79650543271387	3.73307916303474	3.69620744506465	3.80313007823125	3.97991517169742	3.5818212955964	3.62863530734579	3.5266367704428	-0.162731429089244	0.735590420276371	0.895620853939579
Merged-chr2-117403917-4	chr2	117403817	117404017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61040.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	5.60399769147453	5.53469681145524	5.75912077743197	5.79205851787951	5.9828792603425	5.8333178736257	5.62996956466834	5.7790077528838	0.223144670960681	0.39256462781358	0.692002220043657
Merged-chr13-58512195-4	chr13	58512104	58512304	+	978.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	98673.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	4.74438143819696	4.99488140343792	4.82776499184023	5.06191410467944	5.31592160569942	4.92425207707485	5.26624759876892	5.34339354952654	0.568892921976788	0.0752192467996322	0.296031779716411
Merged-chr10-88622295-4	chr10	88622196	88622396	+	958.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17144.0	NM_175418	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	4.7651187004003	4.29169562296243	5.00248138980282	4.62811838121452	4.52930963981229	4.90190621996298	4.62759422628033	5.0590348943322	0.211326110072528	0.580798759488928	0.815976950911987
Merged-chr11-11781930-4	chr11	11781848	11782048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27014.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	6.03823524518989	6.32415292229861	5.99463317164889	6.53773239409031	6.02312660386083	6.21557796432403	5.9640975884074	6.17984344226593	-0.258123610513026	0.310789508131271	0.622882905794051
Merged-chr11-69920582-2	chr11	69920482	69920682	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166590)	promoter-TSS (NM_001166590)	48.0	NM_001166590	276770.0	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	4.36317222708784	4.66827109900084	4.85504689806854	4.47571737490057	4.75287745014692	4.76629042090799	4.89704366257177	4.78196508861993	0.434724780557048	0.213041062855769	0.518181035163026
Merged-chr12-100053393-4	chr12	100053291	100053491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	-58940.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	6.39130448654865	6.32287095345892	6.45841025425298	6.42696388162936	5.64785407968993	6.40570753953984	6.09824970266537	6.10422540825788	-0.495741089402115	0.0517000969199419	0.236362908323758
Merged-chr10-24651332-4	chr10	24651193	24651393	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008813, exon 20 of 25)	exon (NM_008813, exon 20 of 25)	55851.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	4.91194765287007	4.98259482129649	5.6341786430108	5.27035297265824	5.16229174206054	4.79335943325561	5.36578415458979	5.09024120559699	-0.202756164954198	0.557576028840455	0.802786163202762
Merged-chr18-5764897-4	chr18	5764794	5764994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360982, intron 5 of 7)	intron (NM_001360982, intron 5 of 7)	172247.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	6.97823281197409	7.07751609750214	7.02985014513563	6.92637314546604	7.30951825004221	7.1563235301171	7.19825601062725	6.78044734859526	0.181729293721739	0.369012927834163	0.67340010743002
Merged-chr17-29395530-4	chr17	29395442	29395642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34628.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	8.10687658924143	8.56405001828902	8.27607249894218	8.10524747031099	8.14394868716977	8.3783486602564	8.19157567331321	7.91052184585376	-0.141297069742268	0.452996397017752	0.737210555160991
Merged-chr10-12916990-2	chr10	12916890	12917090	+	558.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_038027, exon 4 of 4)	non-coding (NR_038027, exon 4 of 4)	6137.0	NR_038027	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	3.04495518226506	2.83136229283993	2.98179554614828	2.84385692286403	3.14348707726404	3.33318189079766	3.09412212076982	3.27046396978268	1.18076626513539	0.0369509357023518	0.191532963323456
Merged-chr1-161897385-4	chr1	161897289	161897489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20707.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	6.76926039072174	6.47559440098628	6.90858982872107	6.62797717507418	6.18530679961318	6.08860089679694	6.25832241291809	6.37979114865296	-0.687984299156819	0.00238593909604931	0.0267559661096146
Merged-chr3-137864443-4	chr3	137864343	137864543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316995)	promoter-TSS (NM_001316995)	-44.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	8.83466872811949	8.8286675350554	8.59599973572735	8.62345061734218	8.87927929763391	8.84730682680211	9.02655160144348	8.50748127156055	0.132520417534672	0.436448230769753	0.72511335456143
Merged-chr12-86241788-4	chr12	86241707	86241907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324488)	promoter-TSS (NM_001324488)	-51.0	NM_027405	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	8.54379194114317	8.71344047186271	8.26753546368528	8.24295964311816	8.27196138017533	8.2254557440839	8.28486080154157	8.05602067875992	-0.30473882405341	0.0876669560770994	0.322900194908764
Merged-chr10-67296974-1	chr10	67296874	67297074	+	562.0	f0_balb.idr	Intergenic	Intergenic	-11693.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	3.23330435785681	3.06032764471288	3.00890183747985	2.95330154398657	2.91348441968149	2.84375095089004	2.8710836735126	3.28221925395892	-0.306865683800071	0.614155106533369	0.833666043594001
Merged-chr4-57959419-4	chr4	57959320	57959520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3009.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	6.71356208448474	6.48329268139909	7.00324987021786	7.25452009678401	6.85751381748807	6.93756331961542	7.25095293077854	6.88273198703626	0.110678274568222	0.65054291782933	0.853305568650887
Merged-chr13-95868990-4	chr13	95868833	95869033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	22989.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	6.71621180553304	6.47228383848674	6.71739582086975	6.84496981088745	7.27407325557178	7.05607402979603	7.49191359504401	7.31058034472513	0.814923574309635	7.83662667535481e-05	0.00165065139587514
Merged-chr12-35047110-4	chr12	35047017	35047217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014973)	promoter-TSS (NM_001014973)	-72.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	6.88215624046335	7.10362575318621	6.99104121343261	7.17531605710632	7.53677437192784	7.19353197910664	7.40851375157222	7.2011390250954	0.406663837637128	0.0381656306620012	0.195748049062587
Merged-chr12-110776217-4	chr12	110776116	110776316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347428, intron 1 of 2)	intron (NM_001347428, intron 1 of 2)	38284.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	6.9397699516614	7.21271079484087	7.27225618677215	7.56955685754198	7.09426562671646	6.59226833312669	7.48822435013902	7.06458376472113	-0.240014938124071	0.332438626172954	0.64346986397225
Merged-chr5-102034320-4	chr5	102034241	102034441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	35580.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	6.62620830249165	6.54117418839388	6.82598986737975	6.98705631521758	6.14348227408109	6.28115565796949	6.62374861069264	6.71159761520707	-0.45111192016848	0.0642898143422826	0.269435038569791
Merged-chr17-83351812-4	chr17	83351703	83351903	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357886, intron 1 of 21)	intron (NM_001357886, intron 1 of 21)	872.0	NM_001357886	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	5.21157153195374	5.51822726548783	5.42763219891506	5.5948565352601	5.17043574144573	5.01028765275408	5.60698284665261	5.65536285610002	-0.121591273644202	0.698852370592481	0.878505428649175
Merged-chr17-70847245-4	chr17	70847142	70847342	+	916.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164077)	promoter-TSS (NM_001164077)	-465.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	4.55699561630532	4.50790067980374	4.55772120391449	4.21439156979004	5.12554166447187	4.40737068880374	4.89744506503721	4.81993968119758	0.854422600433827	0.0231458318870103	0.14094423542523
Merged-chr11-118740136-4	chr11	118740033	118740233	+	812.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 2 of 14)	intron (NM_001024931, intron 2 of 14)	20908.0	NM_001285438	52897.0	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	3.8973040313664	3.23732774635361	3.52782694680197	3.6487590085515	3.98994706662895	3.97313595518615	3.57391126515205	3.94053179790922	0.830908789844734	0.104527850817786	0.355556643135185
Merged-chr15-27675815-4	chr15	27675713	27675913	+	994.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	5729.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	5.37066844664911	5.12192186664046	5.13903273565391	5.30892295379636	4.94670462616846	4.90860145176267	5.01508942051084	5.07004626695258	-0.492922703752511	0.104856888613225	0.356173155552411
Merged-chr3-30572488-3	chr3	30572364	30572564	+	958.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	27406.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	3.28456786999378	3.31933072617803	3.28491836405034	3.48623507847948	4.06831431134778	3.92640342223159	4.61421753640978	4.35668230319267	2.6160924221061	2.61700925616336e-06	8.35318842351801e-05
Merged-chr13-8861134-4	chr13	8861028	8861228	+	962.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172445, exon 2 of 14)	exon (NM_172445, exon 2 of 14)	9916.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	5.05530541071009	4.70011348586382	4.71894193419878	5.49912776690686	5.35540094794508	5.05541356515727	4.81861739601394	4.8765358362755	-0.0102055799252524	0.978842483020623	0.992516114931184
Merged-chr6-142988931-4	chr6	142988833	142989033	+	799.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24481.0	NM_011374	20449.0	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding	4.2845145438665	3.81809554660946	4.07290331583399	3.51326532919932	3.82969738709341	4.24523718302441	3.85757210799723	4.24268747596177	0.299623685970199	0.540560254685164	0.792823934562141
Merged-chr10-125271705-4	chr10	125271632	125271832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 3 of 5)	intron (NM_001358496, intron 3 of 5)	37084.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	6.5793458928337	6.58071654237111	6.95493284441956	7.22745298175936	6.29419617941523	6.32087757057645	6.57860319554808	6.60769691699732	-0.610842629684114	0.0139291389776141	0.0996744931424141
Merged-chr4-32057290-2	chr4	32057190	32057390	+	773.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93183.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	2.7664145062097	2.83805224886292	2.70051876950306	2.72201466024141	2.63465507695393	2.87362357348527	2.87878726754046	2.94561904418744	0.357880905259495	0.565905657152618	0.807783748011785
Merged-chr11-110380267-5	chr11	110380173	110380373	+	889.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18829.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	3.43684991151481	3.56356612514473	3.60667160585117	3.47244377850577	3.64330422581536	3.61163614479253	3.64341778379351	3.75409797332611	0.465322459807151	0.322747062584946	0.634236711233839
Merged-chr3-36816817-3	chr3	36816715	36816915	+	886.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46291.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	3.11978811981023	3.0871622576936	3.66498179416047	3.85244218412757	3.05869296714351	3.29866523392742	3.29643766539808	3.30714011805862	-0.850174924209737	0.166954199846977	0.458455807681338
Merged-chr14-25470393-4	chr14	25470305	25470505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	11220.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	6.54453069877716	6.20679202671222	6.23301704141263	6.40797507150014	6.41884911448249	6.19645918388336	6.44979251741542	6.34168625097761	0.003643118487076	0.987057940105053	0.995258250959001
Merged-chr18-67289864-6	chr18	67289767	67289967	+	727.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053261, intron 1 of 7)	intron (NM_053261, intron 1 of 7)	644.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	3.7166020724471	3.6549168158761	3.50252309243131	3.58357951070195	3.19392043209469	3.55906039681188	3.79520783786794	3.80994856849673	-0.0250059828838431	0.961773693350704	0.986287517870095
Merged-chr10-24173391-4	chr10	24173275	24173475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	24058.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	4.882874087725	4.78764165104363	5.0468660486161	4.83668754868028	4.97506305422306	4.6096698548329	5.02185273334525	4.32351559020847	-0.233850880799841	0.524516060364774	0.78299900785164
Merged-chr1-39503353-4	chr1	39503251	39503451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24596.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	6.55839592808651	7.18801663455382	7.11914840217221	6.66963622503708	6.68748213816409	6.48505381108983	6.19154276909638	6.13065374803175	-0.727438728438599	0.00539071000269438	0.0502232129949978
Merged-chr5-72173205-1	chr5	72173105	72173305	+	790.5	f0_balb.idr	Intergenic	Intergenic	-5016.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	3.53555140829466	3.48756249711024	3.63401091048244	3.50320971318448	3.2975740380092	3.42702017677998	3.24139317190693	3.25069073904778	-0.828268852966539	0.109404949654506	0.365262551996626
Merged-chr1-72711922-4	chr1	72711843	72712043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009084, intron 2 of 3)	intron (NM_009084, intron 2 of 3)	683.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	4.95877753842817	5.34254768327628	5.28461351807881	4.35336626502333	5.36026136517211	5.39909768869024	5.00695866357932	5.06258157555172	0.355520700543605	0.353024245280134	0.659906317421994
Merged-chr19-32292700-4	chr19	32292614	32292814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	56602.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	6.1562599372974	5.30208719538917	5.92664818679545	6.09138280136311	5.41143074050986	5.46038005066491	5.85346028489726	5.43970624438118	-0.597971799710652	0.0559027800246727	0.247456715135334
Merged-chr1-153751818-4	chr1	153751627	153751827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011882, intron 1 of 8)	ORR1A2|LTR|ERVL-MaLR	2301.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	6.16482258391051	5.67618290564348	5.75298348502079	6.05054565154794	5.58336425617815	5.43028750880248	5.6991787524512	5.91062361044466	-0.438777864399464	0.114207740208363	0.373837784954674
Merged-chr1-55473957-4	chr1	55473860	55474060	+	830.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	ORR1E|LTR|ERVL-MaLR	68014.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	3.86890860714038	4.36149443993755	3.86943777375028	3.8011630206514	4.36978149284755	3.99204228280722	4.38277018508327	3.81104082273786	0.451348627910188	0.334714802430209	0.645165319599757
Merged-chr17-35170985-4	chr17	35170876	35171076	+	999.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361501)	TTS (NM_001361501)	5076.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	5.23355310596096	6.14663479130605	5.37292080621577	4.88078181266493	6.40220700551372	6.27897022648843	5.71281705377433	5.55267384889773	0.875303217444649	0.0222594498174778	0.137573382522524
Merged-chr17-87083878-4	chr17	87083754	87083954	+	962.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23825.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	5.14994041235778	4.64879892862087	4.86395364011218	4.75507996351163	4.76814254957189	4.88728959394631	4.97509097327514	4.66809401123018	-0.0613230608681099	0.857908241179937	0.94645149874375
Merged-chr3-100684342-2	chr3	100684242	100684442	+	804.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010763, intron 1 of 12)	intron (NM_010763, intron 1 of 12)	1131.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	2.76047960822608	2.84671287258337	2.6912092773318	2.81631594339077	2.90391663620011	3.17311128376639	2.87947525914979	2.88839326438244	0.795444853434747	0.191625131084625	0.490978459689893
Merged-chr18-61074818-4	chr18	61074734	61074934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 14 of 22)	Charlie15b|DNA|hAT-Charlie	29684.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	6.63649720128727	6.64987026501783	6.16503185649253	5.55366572069314	7.73418642286934	7.76607432564772	7.40343223004575	7.20644572020338	1.71656440759448	2.45792858808396e-09	1.47142892322311e-07
Merged-chr19-5568381-4	chr19	5568289	5568489	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033448, exon 1 of 2)	5' UTR (NM_001033448, exon 1 of 2)	365.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	4.97426540896847	4.68853942998782	4.6454686185024	4.51624014484073	5.15167806879835	4.59942963918266	4.70425306540834	5.06474958219804	0.425412596513471	0.238767414670394	0.549138711339909
Merged-chr10-80434095-4	chr10	80433992	80434192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164151)	promoter-TSS (NM_001164151)	-439.0	NM_001164148	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	8.17067970574683	8.24737251594265	7.8181367130785	7.8495572891437	8.06142120766704	8.09401090330599	8.06651133076297	7.91836251254497	0.00737408774984704	0.967101497450095	0.988455138025123
Merged-chr7-19364053-4	chr7	19363947	19364147	+	847.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001010836, intron 1 of 12)	intron (NM_001010836, intron 1 of 12)	2831.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	4.15339165455632	4.39385049728398	3.72837011182832	3.90096764787738	4.28645365988763	4.36890699420531	3.9932418955478	4.05737704403552	0.311444403008774	0.487270137040523	0.760600900973846
Merged-chr15-64185389-3	chr15	64185293	64185493	+	990.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 5 of 28)	Lx9|LINE|L1	-124945.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.39438361769684	3.34906448372038	3.47371148789019	2.54022594338072	4.78911961547526	4.93996614966981	4.82699050788743	4.76135630440015	5.90436260419835	9.21097766412861e-17	1.98675205804549e-14
Merged-chr7-19472601-4	chr7	19472491	19472691	+	978.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14097.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	4.87533132684868	4.5156179841576	4.87613057747966	5.00465338815852	5.21125858313279	5.15873950170923	5.23806633857521	5.14430481816257	0.667265543691129	0.0392370995603357	0.199318977276987
Merged-chr18-40308226-4	chr18	40308101	40308301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026135, intron 1 of 1)	intron (NM_026135, intron 1 of 1)	49840.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	7.6198221543312	6.99997493766446	7.40606484327255	7.14935199105202	6.41685434783389	6.53331660590998	6.31931469986879	7.31690761267834	-0.831226285792947	0.0031500344382118	0.0331741995654417
Merged-chr1-74715717-4	chr1	74715620	74715820	+	957.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024264, intron 1 of 8)	intron (NM_024264, intron 1 of 8)	2185.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	5.45724600686201	5.32757357541122	5.11131637857269	5.79126070813667	5.43811342830562	5.1782903219703	5.48446592777413	5.45436827460251	-0.125709682202796	0.687540752873293	0.872378699555673
Merged-chr17-70835290-4	chr17	70835210	70835410	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11467.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	5.28923160017025	5.49145532291981	5.09299637920955	4.86284091347295	5.48079128819895	5.60639098385695	5.2638487651987	5.25567895801618	0.397493404893673	0.211208368639074	0.515787529171727
Merged-chr5-143044170-4	chr5	143044100	143044300	+	928.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	68820.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	5.0406373394372	3.99752561782958	4.15676575765514	4.29721385079955	4.68761523046806	4.53937580953353	4.51586135845692	4.9813915150426	0.566974942706334	0.205751544644996	0.509445159300775
Merged-chr7-104352857-4	chr7	104352719	104352919	+	909.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175677, intron 1 of 7)	URR1A|DNA|hAT-Charlie	530.0	NM_175677	319236.0	Mm.425502	NM_175677	ENSMUSG00000057143	Trim12c	9230105E10Rik|Trim12-2	tripartite motif-containing 12C	protein-coding	3.81293311094019	3.72413200895862	4.18991229746662	4.22893166896817	4.1998569211069	3.93356865008234	3.85149614936935	3.81137250646695	-0.13773061716367	0.768943373919037	0.909549493712757
Merged-chr2-167805158-4	chr2	167805070	167805270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113993.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	6.49930527168217	6.26946648602795	6.53319708649867	6.5561122221014	6.48656071393627	6.62568145032298	6.46724586407584	6.54458009346471	0.0813311977608803	0.702295958514309	0.880083169561444
Merged-chr11-80148399-4	chr11	80148325	80148525	+	939.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5737.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	3.58548054630494	4.01693739366027	4.0449761015466	3.40787390739756	4.10595348387277	4.03243175248396	3.57281090921784	3.70070137353178	0.252117729676247	0.627716093001979	0.841290069815176
Merged-chr1-191955354-4	chr1	191955254	191955454	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22016.0	NM_001177900	74023.0	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	5.11160615253367	4.90412344709341	5.19934737995377	5.3355904115193	4.45794186243678	4.43647477645586	4.74757495165026	4.80554418251646	-1.10398589830122	0.00154300611260995	0.0191074516509157
Merged-chr11-48833863-4	chr11	48833707	48833907	+	942.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053166, intron 1 of 6)	intron (NM_053166, intron 1 of 6)	-3664.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	4.31901440606372	4.46176250006343	4.22635776504915	4.17779056082946	4.45587115037271	4.25215487446126	4.38662001717905	4.73435129529521	0.413974404628008	0.282910303193817	0.595073063564796
Merged-chr14-25471344-4	chr14	25471259	25471459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	12174.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	6.17801204954951	6.37614936910694	5.96337349072247	6.35893205672714	6.19785262940302	6.14056003190211	6.18636711579918	6.19435508165885	-0.0944482720895168	0.685862729479559	0.871706007099949
Merged-chr5-122131816-4	chr5	122131736	122131936	+	973.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183307, intron 2 of 12)	intron (NM_183307, intron 2 of 12)	3057.0	NM_001289811	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	5.34576448997791	5.12187577785738	4.97795648389227	5.38788876870685	4.7057739736568	4.96444862644779	5.18004931025809	4.78294763648033	-0.608654948012224	0.0660027045898016	0.273584518693628
Merged-chr7-68830090-3	chr7	68829997	68830197	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80859.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	3.53936955264629	3.51630306379374	3.92615714430871	3.81267852507835	3.84802646925898	3.33351234375213	3.58163480366648	3.64667851794846	-0.278448388469362	0.590077504653976	0.820738632318576
Merged-chr18-57581815-4	chr18	57581721	57581921	+	926.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 3 of 6)	intron (NM_029290, intron 3 of 6)	-29424.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	4.75927315296112	4.59341818476255	4.62920373430195	5.35952454811638	5.33143874825155	4.89713296295541	5.29571067370873	5.20739767821978	0.558422006390559	0.142949358056387	0.420976100831428
Merged-chr4-41314980-4	chr4	41314872	41315072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026893)	promoter-TSS (NM_026893)	-71.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	7.74522387729751	8.02747438147222	7.89090609587986	7.74669666587935	7.82230458205107	8.00954195781106	7.87411969110034	7.50252963295374	-0.0536775391934427	0.771452723428687	0.910379161490028
Merged-chr17-45572593-4	chr17	45572497	45572697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008302, intron 1 of 10)	CpG	664.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	6.62745366471109	6.77850500860101	6.47698495893279	6.80639118193028	6.73933918617117	7.00918185905822	6.65651312716724	6.85516002265405	0.179909031426138	0.394372384927363	0.693505743675292
Merged-chr7-80343097-4	chr7	80342994	80343194	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026812)	promoter-TSS (NM_026812)	-43.0	NM_026812	68695.0	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	5.86543851258101	5.91051341364598	5.26234329638204	5.85853801326105	6.0173519517742	5.97090992906884	5.83656902032699	5.90728230987578	0.285091581141774	0.294871447940608	0.607012025131288
Merged-chr13-110753960-3	chr13	110753877	110754077	+	951.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149522.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	3.89652592025909	3.80147399717838	4.0637229614202	4.43891350236854	2.91573700762082	3.17706839945262	3.27417545025359	3.05736010903871	-4.15159872049109	6.69719923010551e-08	2.98497147150707e-06
Merged-chr12-91588498-4	chr12	91588420	91588620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175335, intron 1 of 8)	CpG	1129.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	7.26503015479149	7.78158491239423	7.52144151779929	7.33180265958111	7.65526000696474	7.91814525896165	7.62357926711459	7.53458429255762	0.264657475610737	0.183372518907316	0.480304416680915
Merged-chr4-149137523-4	chr4	149137395	149137595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027263, exon 1 of 5)	exon (NM_027263, exon 1 of 5)	105.0	NM_027263	69928.0	Mm.260893	NM_027263	ENSMUSG00000073705	Cenps	2610040C18Rik|2810407L01Rik|Apitd1|CENP-S	centromere protein S	protein-coding	5.72771199996634	6.1889610767587	6.11801389508336	5.54178624920157	5.93587447727533	5.74487270128758	5.14130720576666	5.89050231357004	-0.315860490593017	0.324838571377071	0.636382480721343
Merged-chr18-30513808-4	chr18	30513697	30513897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	240932.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	6.24658879415627	5.84615519787764	5.59856144667358	5.714923639728	5.87402997561546	5.93991161582382	6.3473535458197	5.90414063724781	0.257233623816262	0.356071065181431	0.662704502355483
Merged-chr16-95753581-2	chr16	95753481	95753681	+	641.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51174.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	3.34106365010859	3.26268323975441	3.17058285872743	2.99219428048299	3.42281254986551	3.15241584217989	3.27419203230952	3.22843316770909	0.343868888748504	0.53319990871012	0.788495134358499
Merged-chr14-31402212-4	chr14	31402114	31402314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	L1M3|LINE|L1	15463.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	7.0270619279447	6.26037133983855	6.89818088195714	7.06890493619853	6.47465857631016	6.28932912274118	6.43820037524234	6.48411888220784	-0.619887280278465	0.013402718228676	0.0970984306156672
Merged-chr19-3377120-4	chr19	3377000	3377200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 14 of 18)	intron (NM_013495, intron 14 of 18)	-11757.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	7.46120879009427	7.39112012754783	7.18526428055452	7.50114846449223	7.06327294766085	7.55357002370519	7.09068239942863	7.27957104799958	-0.190674542575066	0.342861623478855	0.6516462545027
Merged-chr10-67204707-2	chr10	67204607	67204807	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 3 of 25)	intron (NM_207221, intron 3 of 25)	18957.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	4.82430438646184	4.39583286590667	5.47239541949087	4.96663195943362	4.6815913327103	4.27523130883004	4.43949630015423	4.54710278730954	-0.984899672386078	0.0187919267180102	0.12275820153453
Merged-chr13-67109069-1	chr13	67108969	67109169	+	987.0	f1_balb.idr	intron (NM_001256052, intron 2 of 6)	intron (NM_001256052, intron 2 of 6)	4959.0	NM_001256052	432770.0	Mm.124021	NM_001256052	ENSMUSG00000074824	Rslcan18	mszf51	regulator of sex-limitation candidate 18	protein-coding	4.34795118514964	4.57850872810513	4.47658657728431	4.67004013872802	4.05169546366431	4.38327304397797	4.45598221294813	4.43251739427224	-0.477185317036878	0.219717380038704	0.527355792884236
Merged-chr1-16518878-4	chr1	16518910	16519110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347044, exon 1 of 14)	5' UTR (NM_001347044, exon 1 of 14)	105.0	NM_001347044	29819.0	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen double-stranded RNA binding protein 2	protein-coding	5.04906179693375	5.11409339384165	5.33343693668643	5.26730674334282	5.16844059639113	5.18963075866152	5.12643408922054	5.35750860804822	0.0190738289239519	0.948636738756986	0.981505068413072
Merged-chr8-121877455-3	chr8	121877359	121877559	+	968.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30227.0	NM_011404	20539.0	Mm.22374	NM_011404	ENSMUSG00000040010	Slc7a5	4F2LC|D0H16S474E|LAT1|TA1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	protein-coding	3.40915359398184	3.36905244856682	3.4095664868747	3.10995479563398	5.11187949523636	4.42506260115354	5.23568197741404	5.19322874122826	4.99699484507823	1.11885487656735e-08	5.88175563214087e-07
Merged-chr4-149779130-4	chr4	149778953	149779153	+	870.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-4786.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	3.25742731582625	3.42860804802425	3.50932315596718	2.92545724644198	3.71182777949655	3.74058525404842	3.70417569251202	3.98172941194343	1.66975334769407	0.00188684031780581	0.0223503756001164
Merged-chr6-72881418-4	chr6	72881301	72881501	+	962.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019715, intron 1 of 6)	intron (NM_019715, intron 1 of 6)	17891.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	4.2712100592569	4.48202564249843	5.05784137435454	5.120156314072	4.54789772113329	4.45563299489056	4.91041672544724	4.89861677157132	-0.160093887587783	0.701189303508091	0.879597990737905
Merged-chr9-61702618-4	chr9	61702469	61702669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	211941.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	7.80115155674446	8.20580894668412	8.04925490681532	7.61112196730308	7.98690217202994	7.94047058375419	8.04228754184044	7.52873688091976	-0.0519512776560918	0.802898421144883	0.923936032101707
Merged-chr13-81439521-4	chr13	81439429	81439629	+	798.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_054053, exon 67 of 90)	exon (NM_054053, exon 67 of 90)	193615.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	3.54536898357965	3.79420444521929	3.41822395207638	3.53502582661412	3.79726650954365	3.89046007475356	3.85156805533949	4.16121881108327	1.02778400656458	0.0287051018530101	0.16271061909555
Merged-chr11-114830190-4	chr11	114830037	114830237	+	916.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21395.0	NM_001110337	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	3.95244468624574	3.9608091922016	4.00081996877428	3.80124615560095	4.10469218170991	4.12367340804957	3.72785584298141	3.90112043890904	0.154824371158283	0.723580699455609	0.889683029997422
Merged-chr19-56720450-4	chr19	56720356	56720556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1916.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	6.89732127115415	6.98526852979334	7.12996103726641	6.24759216069973	6.56652565829893	6.91229018616823	6.54824274105801	6.30464128824875	-0.350710031720807	0.195277726854512	0.496044870624791
Merged-chr1-55363560-6	chr1	55363500	55363700	+	921.257935	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029267)	promoter-TSS (NM_029267)	-131.0	NM_029267	75388.0	Mm.483408	NM_029267	ENSMUSG00000025977	Boll	4930554P13Rik|4930597B14Rik	boule homolog, RNA binding protein	protein-coding	3.86300364686511	3.97180976663379	4.18595370975364	3.76889006639992	4.02602814846371	4.13474208837064	3.89881284047482	3.8613768250644	0.111061840689965	0.800490321613576	0.923040237917604
Merged-chr13-98814708-4	chr13	98814663	98814863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 1 of 25)	CpG	686.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	5.55865553275765	5.47959299865842	5.45135758333589	5.16916184758953	5.28650154992174	5.44614895308651	5.45178372136336	5.76949438014275	0.152533746598424	0.605102849587763	0.828698063423653
Merged-chr13-69538474-4	chr13	69538375	69538575	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4611.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	7.3489520965116	7.56452964451041	7.83789671247527	7.69338991787899	5.69444342441579	5.3362914677545	6.02050361077013	5.61249044797129	-2.81960123783372	1.04297945414089e-28	1.09173874362198e-25
Merged-chr9-13581445-3	chr9	13581402	13581602	+	902.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-38487.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	3.35386544933523	3.22547666299122	3.1330880913863	3.46120851565465	3.03047660457252	3.11443950310153	3.12212154999601	3.00509285614836	-0.956655481650506	0.0939275370987366	0.335277877261288
Merged-chr15-63924535-6	chr15	63924304	63924504	+	908.904785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029414, intron 10 of 10)	intron (NR_029414, intron 10 of 10)	9943.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	3.41978984298112	3.69710329690576	3.94814481192144	3.10517345959324	3.66343408936107	3.77815665056572	3.88599324348675	3.8086203077266	0.641744586003122	0.234249126199818	0.544053856944459
Merged-chr12-40271406-4	chr12	40271297	40271497	+	934.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	48033.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	4.66405113391386	4.84227601667347	4.95419362691035	4.24697782908406	4.79963971775708	4.87918957417946	4.75832802887056	4.88446890769075	0.302756195427567	0.415408954073149	0.709669841401
Merged-chr12-117481890-4	chr12	117481791	117481991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34588.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	7.00988778254096	7.41402939121303	7.62539725621467	7.28227607088409	7.57032773187457	7.21584046598859	7.65967477661859	7.47190076776204	0.191817441234728	0.355410210322358	0.662019296065085
Merged-chr9-90062079-4	chr9	90061959	90062159	+	856.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007801, intron 3 of 11)	intron (NM_007801, intron 3 of 11)	7792.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	4.34985763592501	4.17036302435215	4.30628470491933	4.99798439269811	4.52020184820758	4.18458595476927	4.14624031002803	4.16123616565215	-0.582083272000258	0.198459941583238	0.499992714139038
Merged-chr2-18898123-4	chr2	18898022	18898222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 3 of 9)	intron (NM_008845, intron 3 of 9)	-96304.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	7.61611069514716	7.27837078563145	7.60041593406573	7.81033811621629	7.71561254352893	7.43603313874509	7.51083596385033	7.07236704135487	-0.178941304356503	0.406215801333716	0.702786313818789
Merged-chr1-182909290-3	chr1	182909160	182909360	+	851.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45528.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	3.0383707043347	3.08979497282007	3.15716224770049	2.76424170118869	2.97548203718404	3.21135108316385	3.02781265512997	3.21066402109427	0.396322728290664	0.502466553624813	0.769717422982556
Merged-chr1-132011942-4	chr1	132011853	132012053	+	900.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007923, intron 1 of 4)	L1MB8|LINE|L1	4348.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	3.65771171108799	3.9163380852601	3.65818142964858	4.01428702228856	3.93761095273056	3.88632633439517	3.58706238864584	3.91362195475068	0.0178918310769664	0.969748497727335	0.989095984799937
Merged-chr9-50554856-4	chr9	50554740	50554940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357222, exon 1 of 6)	5' UTR (NM_001357222, exon 1 of 6)	140.0	NM_001357222	16173.0	Mm.1410	NM_008360	ENSMUSG00000039217	Il18	Igif|Il-18	interleukin 18	protein-coding	6.25827885777414	6.5877760357163	6.33511160049127	6.16572658223529	6.39414151156325	6.58225919009872	6.71858339445267	5.92270176628492	0.140860000120064	0.58850746809709	0.819757416324321
Merged-chr1-54910063-4	chr1	54909949	54910149	+	841.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	16338.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	4.26639625180484	4.18119421081412	4.31467665256971	4.60537051980421	4.29716336539378	4.94763726091331	4.50850743815339	4.44512364550136	0.446639187526088	0.275694501993956	0.587605071188998
Merged-chr5-99630311-4	chr5	99630186	99630386	+	912.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	98774.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	4.25151071328827	4.36661159680813	4.09216223745031	4.48430349025323	4.72501842507686	4.91683004277511	4.4192924437387	4.77839640969681	0.879972970603333	0.022619626999615	0.138916516842588
Merged-chr2-78868892-8	chr2	78868788	78868988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009454)	promoter-TSS (NM_009454)	-159.0	NM_009454	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	5.81175688488442	6.1483166995382	6.09868722728323	5.45650337568377	6.01646530034138	6.03705856941748	5.96556977446454	5.92630213057654	0.154629672981491	0.577518316358221	0.814166268489505
Merged-chr2-164746018-4	chr2	164745943	164746143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133763)	promoter-TSS (NM_133763)	28.0	NM_133763	76233.0	Mm.440009	NM_133763	ENSMUSG00000017299	Dnttip1	6430706C13Rik	deoxynucleotidyltransferase, terminal, interacting protein 1	protein-coding	5.99499159615767	6.17662246466546	6.22986094544551	5.47571697590181	6.2749390202998	6.14981465323469	5.67988950125328	5.47022475910818	-0.0772474839551938	0.81025312564529	0.92679579587174
Merged-chr14-33319708-4	chr14	33319624	33319824	+	990.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 4 of 10)	CpG	91300.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	4.90547342619212	4.9603311477932	4.90627789358655	5.19681971848051	4.97850063647354	5.00615110077405	4.84628015861205	5.10505852008712	-0.0573364446259734	0.857798338979188	0.946392149155271
Merged-chr15-96658948-4	chr15	96658836	96659036	+	912.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16023.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	4.31618552823493	4.62065842771733	4.4493838392413	4.49763217774922	4.09197847208962	4.53642505161118	4.58520521151072	4.4877951993479	-0.115833411839594	0.765175775257391	0.908073735487109
Merged-chr7-122520510-4	chr7	122520400	122520600	+	890.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 7 of 16)	intron (NM_001316672, intron 7 of 16)	-151244.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	3.96184719592879	3.50664407362332	3.96243770656043	4.12694893554443	3.59635939758935	3.86961898116928	4.24883953669692	4.4130019778884	0.410359156070017	0.42560991753882	0.71708022629999
Merged-chr2-129401524-2	chr2	129401424	129401624	+	963.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30385.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	2.89431018497577	2.68238953098436	3.00344562553314	2.64397672395438	2.54089914549568	2.52545727119717	2.63675487615072	2.89305742015286	-0.749012878333506	0.276254955316257	0.588302970120437
Merged-chr5-12160966-4	chr5	12160844	12161044	+	921.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-222222.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	3.23160313137125	3.32200678231113	3.03592201156566	3.20300953937199	3.45421525546603	3.46187230981104	3.44032569251978	3.34639871490228	0.798538992706411	0.126610056559775	0.395628391059616
Merged-chr3-88424664-4	chr3	88424570	88424770	+	921.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281795, intron 1 of 3)	intron (NM_001281795, intron 1 of 3)	471.0	NM_178696	229517.0	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding	4.37738143600259	4.83470614224838	4.42557047172767	4.30047505812874	4.76014238562475	4.64881486817765	4.57873407188275	5.17588084934945	0.675031449880167	0.0789309211376657	0.304016452145991
Merged-chr19-32760636-4	chr19	32760552	32760752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 1 of 8)	intron (NM_008960, intron 1 of 8)	3075.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	6.61413923936299	6.89557250571305	6.69368322941643	6.75087889642847	6.98520848029819	6.91492435063378	6.84301908189065	6.71902825049472	0.180428648686211	0.369027389002379	0.673404163599093
Merged-chr19-17250174-8	chr19	17250066	17250266	+	840.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89339.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	4.25054687353044	4.23397966977203	3.8296134560351	3.78126401136479	3.72016087880316	4.10990936885523	3.96894998837646	4.07816063620418	-0.169320133707272	0.71284337211305	0.885082780938882
Merged-chr1-173942530-4	chr1	173942450	173942650	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302651)	promoter-TSS (NM_001302651)	-58.0	NM_001302651	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	5.48197739224336	5.0151611876959	5.40234953912203	5.02700558929451	5.36191873066677	5.48984388610438	5.09934259404357	5.39855472296353	0.205205769586622	0.509146806808652	0.773907930337256
Merged-chr5-117842079-3	chr5	117841968	117842168	+	826.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-24771.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	4.2602349791222	4.07540722431982	4.04321725575769	4.2430946545625	3.39582510074374	4.16827819663059	4.11605216220586	3.77921843944176	-0.723288794237038	0.141489300998023	0.418529150801574
Merged-chr19-45242634-3	chr19	45242585	45242785	+	786.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7449.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	2.96098513068882	3.09142826120984	3.36626545715284	3.06906819060357	2.91420853243191	3.2625306645254	3.19528852463336	3.14886516309869	0.0172214059510877	0.976308206187198	0.991528225629167
Merged-chr8-94093081-3	chr8	94092982	94093182	+	948.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026116, intron 1 of 16)	intron (NM_026116, intron 1 of 16)	5729.0	NM_026116	67378.0	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	4.1530679510293	3.81521573817504	4.06577763235847	4.56983194452878	3.64298635755684	3.87963111512206	3.85365541779539	3.81314260578783	-1.11065873026575	0.0204077731202754	0.129761141286375
Merged-chr19-41263448-4	chr19	41263364	41263564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133352, intron 1 of 14)	CpG	540.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	6.38104889613678	6.32471663358763	6.66803954565151	6.00637790417886	6.33858383970115	6.72409627132254	6.45167104219443	6.32296452256014	0.170421081880478	0.497570600111606	0.767090702736496
Merged-chr7-122242480-2	chr7	122242380	122242580	+	871.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22984.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	3.27822774699469	3.16336568513175	2.94276056782718	3.14836984543311	3.30403128232504	3.26780334279735	3.37853011840782	3.8803984351726	1.20504464630158	0.034615038900958	0.184172810130908
Merged-chr6-137694156-2	chr6	137694049	137694249	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-40933.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	3.3728081052984	3.08826367252904	3.20925491978022	2.36514789343128	3.35822879995774	3.13636709088462	3.25238913312395	3.20741972622858	0.469463803832496	0.702093861678902	0.880010098877197
Merged-chr10-79874482-3	chr10	79874399	79874599	+	807.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033210, exon 1 of 6)	non-coding (NR_033210, exon 1 of 6)	135.0	NM_181681	216152.0	Mm.29678	NM_181681	ENSMUSG00000035835	Plppr3	Lppr3|Prg2	phospholipid phosphatase related 3	protein-coding	4.18252251849256	4.08611685228188	4.22613934203554	4.06473589596478	3.94887539596175	4.11862503492583	3.76166431308535	4.30507928959818	-0.238356746757178	0.578209150068782	0.81458069221668
Merged-chr11-48799648-2	chr11	48799548	48799748	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008143)	promoter-TSS (NM_008143)	-712.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	3.53778347758817	3.30955496896185	3.53829303259738	3.5101461026725	3.29921674097694	3.48915789510565	3.17905324082904	3.53623225825397	-0.336764015601624	0.51886246985679	0.779745431679921
Merged-chr7-63989909-4	chr7	63989818	63990018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-51003.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	5.72996283591894	5.67680716758179	5.67394658925163	5.87279666302066	6.44849454689576	6.53362845382475	6.76436554869164	6.37085126824078	1.19198759246019	7.00938021433259e-07	2.527460356008e-05
Merged-chr6-82985214-3	chr6	82985117	82985317	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	RLTR20A3_MM|LTR|ERVK	38295.0	NM_033079	110958.0	Mm.100652	NM_033079	ENSMUSG00000030041	M1ap	D6Mm5e	meiosis 1 associated protein	protein-coding	3.58187445332391	3.67541599385635	3.9162097589473	3.72960622860207	3.37295936665927	3.64166571805623	3.62166222334757	3.52448919033786	-0.626231326225434	0.200660512844828	0.502845185318336
Merged-chr8-124247729-4	chr8	124247641	124247841	+	904.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139272, intron 1 of 15)	MTD|LTR|ERVL-MaLR	16347.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	4.44988756208045	3.84445310311929	4.68974608076407	4.55915009990982	4.53426823484372	4.4426067191306	4.6670672608446	5.00516535095814	0.555873334571924	0.19707496571826	0.498379618699314
Merged-chr1-39936703-4	chr1	39936598	39936798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	35785.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	6.4267591216272	6.69125460274163	6.61597194811837	6.80825417536568	6.79755076915169	6.67671064295199	6.8642505292921	6.74660394924505	0.167593609549061	0.4214222044787	0.714001052191097
Merged-chr5-123862827-3	chr5	123862726	123862926	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030701)	TTS (NM_030701)	2690.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	4.81192971382988	4.65366937925231	4.28151782341837	4.05058299638581	4.89525989477547	4.84326428809207	4.44896104517414	4.46647468149994	0.463642785047289	0.264654951817056	0.576566406596513
Merged-chr4-44168321-4	chr4	44168215	44168415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175201)	promoter-TSS (NM_175201)	-32.0	NM_001038993	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	7.28753199158742	6.93090284751625	6.8346265542727	7.14861026153303	7.2775913196678	7.20356422873327	7.50253794219123	7.23115637009453	0.330273898357227	0.0989821415901808	0.344925578000954
Merged-chr3-96264008-3	chr3	96263928	96264128	+	860.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033596)	promoter-TSS (NM_033596)	-711.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	2.72031782473409	2.86235697646099	2.72061712299616	2.47738034174651	2.64900452545278	2.96575427256776	2.96340451447488	3.23487845311344	1.22397222716527	0.0642789730789998	0.269435038569791
Merged-chr5-122644393-4	chr5	122644330	122644530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038845, intron 1 of 12)	intron (NM_001038845, intron 1 of 12)	519.0	NM_001038887	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	5.58316660568983	5.57869729558981	5.8152602633553	5.55008122864367	5.31583523812053	5.31002484709298	5.24256383438368	5.19804674161865	-0.632399017796833	0.0231688830294444	0.141038858246198
Merged-chr10-44011595-4	chr10	44011488	44011688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6742.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	6.11455813280579	5.84349362135768	5.90904106225647	6.08513995162698	5.71728277892694	5.86546056827816	5.83348013614876	5.65776950486521	-0.372430719395378	0.13419674818119	0.407825042139404
Merged-chr2-4917547-4	chr2	4917461	4917661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1435.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	6.040538868829	5.95310604873555	5.74092011539011	6.00261609932313	5.97058753268116	6.01687704320367	5.88157674732767	5.9300342541279	0.00840592738497419	0.972162684816845	0.989936735419783
Merged-chr5-123076760-2	chr5	123076660	123076860	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039723, intron 1 of 11)	CpG	485.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	2.80797726337351	2.78596792579566	2.73824097204872	2.85062749639655	2.94944671307868	3.22400333488203	2.92766471075019	3.1627638268753	1.14184158811753	0.057869871558621	0.252536299900134
Merged-chr7-16019629-4	chr7	16019507	16019707	+	952.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-20112.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	5.32403325009897	5.1796981887004	5.38052955298912	5.66740655172015	5.0121939962661	4.90090418858275	4.78405623927336	5.20224269024667	-0.803282875784881	0.0124472524712956	0.0921842663254964
Merged-chr11-114676585-4	chr11	114676573	114676773	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	1205.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	3.54419692309445	3.37305170252777	3.86460114090199	3.70924413691248	3.93613123608046	3.77869387469735	3.8002308342803	3.9531575359761	0.686473816245211	0.147712916078494	0.429022632454038
Merged-chr9-56417661-4	chr9	56417556	56417756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025812)	promoter-TSS (NM_025812)	394.0	NM_172924	244895.0	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	6.17104156380661	6.44371443972046	5.83174162263587	5.8938674894378	6.15552377391483	6.54834364996132	6.27191600780274	6.12729376330853	0.272172978899281	0.29934031611249	0.611562066856898
Merged-chr1-182409047-4	chr1	182408930	182409130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173378)	promoter-TSS (NM_173378)	-137.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	8.11407131482316	8.36494750943397	8.13455999010834	8.21890053832334	8.44025590925745	8.33715477530154	8.5353883558969	8.23867502147061	0.229342748785006	0.154040868158945	0.439181632779434
Merged-chr19-56398511-4	chr19	56398418	56398618	+	913.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007611, intron 1 of 6)	MTD|LTR|ERVL-MaLR	1389.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	4.72730047492457	4.98871387262978	4.76632152631461	4.86573380152802	4.91912158304795	4.78110262167554	4.58591637397495	4.72499268250091	-0.164199356372696	0.62592776413137	0.840129896434535
Merged-chr14-36968805-4	chr14	36968695	36968895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027045)	promoter-TSS (NM_027045)	-31.0	NM_027045	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	9.03177607630558	8.93601348404461	8.71672173054334	9.00682324841999	8.96967499069818	8.88118278966479	9.12224220872602	8.80833221660761	0.0255025587017265	0.870572333299449	0.951405771688593
Merged-chr5-122281370-4	chr5	122281261	122281461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3037.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	5.97463067158613	5.6345323535202	5.47243808559871	5.64924693249789	5.33933032627165	5.61955067719248	5.50226371009784	5.84712785960114	-0.186002292564977	0.515388757862678	0.777533445789008
Merged-chr10-7333617-3	chr10	7333530	7333730	+	929.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121393.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	3.99607655827257	3.70504620843219	4.04007455303582	4.34973285309371	3.43505999336111	3.5739075552195	3.68541524635443	3.64122984522755	-1.4306277126923	0.00419253306124058	0.0415974785009818
Merged-chr18-69662358-4	chr18	69662255	69662455	+	981.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-263204.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	4.8630379822835	4.88596430840315	4.58541246058725	5.16012083255368	4.78677861112343	4.84707525764214	5.09601508949544	4.49085082753236	-0.170992426609855	0.63934974873207	0.847580193790509
Merged-chr11-3159816-2	chr11	3159708	3159908	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 10 of 32)	MTD|LTR|ERVL-MaLR	33655.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.48342835554916	5.99628828573365	6.78374385993277	6.64590820417475	3.55149610373902	4.14997333759055	3.98073029873442	3.99580047055374	-8.41382594013586	3.18660356897919e-16	6.28308186804348e-14
Merged-chr7-45091377-3	chr7	45091330	45091530	+	954.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355045, intron 2 of 6)	intron (NM_001355045, intron 2 of 6)	783.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	3.5791120150562	3.50813039389999	3.38145547969892	3.57862435171119	2.94355809497592	3.12195139119936	3.0032321846362	3.14527211121018	-1.88662171052781	0.00129815262263011	0.0166118906408239
Merged-chr14-61328130-1	chr14	61328030	61328230	+	701.799988	f0_balb.idr	Intergenic	Intergenic	18377.0	NM_177337	219144.0	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	3.90745467481685	3.66216293701251	3.81970398802424	3.64172161340341	3.24115706345571	3.56682373422385	3.49700526275689	3.56525860681736	-0.949699902300227	0.0605686403365567	0.260052547978977
Merged-chr10-37140421-5	chr10	37140250	37140450	+	900.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1424.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	3.17572470043911	3.38963611006005	3.2408162646494	3.431052743266	3.77126695955819	3.47467521500986	3.40473431044155	3.35979375433114	0.672356741107529	0.206789303129513	0.510809505458117
Merged-chr9-108339207-4	chr9	108339116	108339316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001329528, exon 1 of 3)	5' UTR (NM_001329528, exon 1 of 3)	136.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	8.19733469194873	8.48550789269786	8.0185425503134	7.98795751883008	8.26892656547166	8.52329321261421	8.26314397028765	8.06734061595552	0.132555471155992	0.484203856566124	0.758359106355098
Merged-chr12-79168097-3	chr12	79167995	79168195	+	892.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016800, intron 1 of 5)	intron (NM_016800, intron 1 of 5)	4363.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	3.69516492045841	3.73179044520216	3.31412808100447	4.36144884199516	2.97953816002241	3.07143668250746	3.02713782677975	3.24789824022467	-2.91686349813233	1.81669388092241e-05	0.000468346446034684
Merged-chr5-74312044-3	chr5	74311937	74312137	+	787.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	116711.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	3.93495405506898	4.1577232190528	3.84577671608915	4.0547631249244	3.12556832661679	3.3139356906129	3.4578798358542	3.26971728606773	-2.54371644276637	6.18271651224948e-06	0.000179331531632195
Merged-chr14-72581225-4	chr14	72581117	72581317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 7 of 25)	intron (NM_207636, intron 7 of 25)	128786.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	6.71587710013571	6.82010605136267	6.65606110072086	6.95457461612229	6.83721345230571	6.75224191128845	6.65297414860102	6.8530536909805	-0.037050943815941	0.855525076209599	0.945674414504706
Merged-chr11-20915269-4	chr11	20915150	20915350	+	927.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84142.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	4.7529884554635	4.91431208584668	4.54241307142036	5.16837269341561	4.65154844064159	4.84902360881668	5.03866110124243	4.82627974629004	-0.0883091979184487	0.806542256703907	0.925439675100154
Merged-chr13-8744731-4	chr13	8744641	8744841	+	773.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 8 of 10)	intron (NR_110345, intron 8 of 10)	126303.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	3.98774515314771	4.11457886119357	4.08482473481516	4.2305844112674	4.15915473845468	3.82912736718277	4.02048935471743	4.17193443480436	-0.152266813022057	0.717813771630875	0.887191620352087
Merged-chr13-119713267-4	chr13	119713170	119713370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175538, intron 3 of 3)	intron (NM_175538, intron 3 of 3)	22919.0	NM_001291439	208715.0	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding	5.50552664297343	5.42251475046987	5.44889778494038	6.02953985685926	5.40874598963454	5.68157152032384	5.4217545841753	5.68556977683038	-0.172505973984719	0.572523917072362	0.811251013052168
Merged-chr17-43332510-3	chr17	43332417	43332617	+	870.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27914.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	3.33072506425756	3.41730204536419	3.33113042873477	3.50747021205336	3.46402125730564	3.56109041738974	3.67987765176998	3.26782704487842	0.314952658700606	0.540047522417149	0.792463821677907
Merged-chr5-67607896-4	chr5	67607757	67607957	+	921.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033415)	promoter-TSS (NM_001033415)	-26.0	NM_001033415	330096.0	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	4.30341340577283	4.04469932893415	4.54908293364474	4.46367467892002	4.14888550935975	4.33777497428036	4.45170595874833	4.50843584991291	0.0101557509910889	0.979794388102315	0.992760647616391
Merged-chr10-80117203-6	chr10	80117132	80117332	+	850.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301853, intron 1 of 8)	CpG	1429.0	NM_001301854	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	4.22546627615222	4.17624521833825	4.12921075147389	4.44378315294447	4.14596130317143	4.25500824651273	4.69823884730147	4.31353390409504	0.248088796489477	0.546618524856892	0.796474104007957
Merged-chr2-152437681-4	chr2	152437575	152437775	+	992.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110368, intron 6 of 10)	intron (NR_110368, intron 6 of 10)	22088.0	NR_110368	228778.0	Mm.70959	NM_177656	ENSMUSG00000032680	6820408C15Rik	-	RIKEN cDNA 6820408C15 gene	protein-coding	4.74793284824875	4.76314005246357	5.13901940165511	4.44299382806236	4.87250838942028	4.84514198590533	4.79958875588746	4.49422758149713	-0.0339512251253835	0.927408639311623	0.973485024886625
Merged-chr18-5990087-4	chr18	5989999	5990199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	145999.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	7.98976345006909	8.16247754099074	8.03163756640035	8.32589936866613	7.90233971122248	7.99191492657486	8.11933896899487	7.84025037591695	-0.227544474417717	0.184887016655596	0.482566571028884
Merged-chr4-136140492-4	chr4	136140410	136140610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3312.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	7.601069883412	7.76466421642055	7.62904463702012	7.63325518623763	7.97635125665214	7.82409647316289	8.20885251677222	7.71703936831334	0.375781066902585	0.0372751606263686	0.192582467752362
Merged-chr4-145025336-1	chr4	145025236	145025436	+	750.0	f0_balb.idr	intron (NM_001276465, intron 65 of 69)	intron (NM_001276465, intron 65 of 69)	132199.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	2.55374896636216	2.46686968007304	2.72663141922226	2.70533975007997	2.25187774602622	2.21956943119446	2.19885162462505	2.55274675022262	-1.88876446233064	0.0220841489946076	0.136856643118891
Merged-chr5-134727292-4	chr5	134727165	134727365	+	947.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007925, intron 10 of 36)	intron (NM_007925, intron 10 of 36)	20058.0	NM_007925	13717.0	Mm.275320	NM_007925	ENSMUSG00000029675	Eln	AI385707|AI480567|E030024M20Rik	elastin	protein-coding	4.47780650190378	4.62171804053292	4.56072244634081	4.21977781667682	4.16858457977351	5.0129068113699	4.32530357674051	4.59686522955114	0.195851251604399	0.638853662498044	0.847409779354821
Merged-chr4-150212659-4	chr4	150212591	150212791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B1|LTR|ERVK	-11556.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	7.39449676528255	7.70675384503699	7.62503158879827	7.17771425207714	7.64825472581664	7.61265566307587	7.58761845418905	7.26369397204151	0.073653214273472	0.719437944932693	0.8879792172981
Merged-chr2-73892819-4	chr2	73892690	73892890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284376)	promoter-TSS (NM_001284376)	-151.0	NM_001284370	11909.0	Mm.209903	NM_009715	ENSMUSG00000027104	Atf2	Atf-2|CRE-BP|Creb2|D130078H02Rik|D18875|Tg(Gzma-Klra1)7Wum|mXBP	activating transcription factor 2	protein-coding	8.98807699269957	9.08622900359126	8.84351416236921	8.78276993589183	8.94915986565955	9.10575498186892	8.95651115594492	8.81800544507483	0.0405056128897193	0.792995543528834	0.919802981990661
Merged-chr7-99183964-4	chr7	99183888	99184088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1275.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	6.91984504321506	7.02025329191437	7.11568458893788	7.33573016243871	6.78091922171869	6.92963678337438	6.71793346527476	6.74747245618417	-0.454238360579968	0.026258366663258	0.153527540719898
Merged-chr15-30740923-4	chr15	30740826	30741026	+	866.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 9 of 21)	intron (NM_001355502, intron 9 of 21)	-298200.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	4.20265848683844	3.56579534692496	4.20332675354479	3.9753501024288	3.89858052562623	4.04165651920761	4.26555023792542	4.24245960247393	0.290895186508379	0.526925322819538	0.784016455166626
Merged-chr5-24686400-4	chr5	24686291	24686491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305264, intron 1 of 14)	intron (NM_001305264, intron 1 of 14)	576.0	NM_001305264	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	5.72400504076149	5.64937498900486	5.44928508302449	5.52074181987606	6.12373619327607	5.74323074092096	5.59342417085396	5.92612447950758	0.475829390662016	0.0789569841605312	0.304100382856038
Merged-chr8-84739524-1	chr8	84739424	84739624	+	857.0	f0_balb.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	34845.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	2.96304166114515	2.86666249353039	3.3321123634751	3.26813122050346	2.90662189531256	2.72060008445845	2.95286992937396	2.69219107915116	-1.31620177152219	0.0482071421059398	0.226565610297702
Merged-chr5-65765103-4	chr5	65765003	65765203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024917, intron 1 of 19)	intron (NM_001024917, intron 1 of 19)	1582.0	NM_001024917	333789.0	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	6.31843735532297	6.68033455126836	5.96920549792365	6.81256748717271	6.55771419620998	6.79967624067912	6.44794656075304	6.33402683689931	0.0606398162602815	0.821134340381585	0.93149474715163
Merged-chr3-105862014-5	chr3	105861932	105862132	+	992.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8826.0	NM_027025	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	5.01027730591818	4.94474505600733	5.18694794413307	4.85084760639944	4.4241622857228	4.60317274492111	4.54218288177484	4.83970483560387	-0.818845570779432	0.0192603740491583	0.124743782024117
Merged-chr7-100862733-4	chr7	100862634	100862834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	679.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	4.75639695894975	4.82805974797849	4.79489329262046	4.1571823488271	4.88063458290257	5.00463775223811	4.84349291312369	4.96489665368062	0.583029386907674	0.117036328561954	0.378505558213064
Merged-chr9-53610388-4	chr9	53610285	53610485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144784)	promoter-TSS (NM_144784)	-35.0	NM_144784	110446.0	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	7.58929287351389	7.74221785874099	7.49844246752792	7.55499140140762	7.67328640824802	7.63715528408108	7.95174884461078	7.74362674096807	0.206237353995172	0.237922486909716	0.548215763990676
Merged-chr19-12794840-4	chr19	12794729	12794929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053009, intron 1 of 10)	CpG	1294.0	NR_024093	664779.0	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	7.14521581489314	7.35786011791899	7.18080539587828	7.05180527170575	7.18692113861044	7.18900299987218	7.35174893535934	7.2630226931877	0.0884320925789349	0.633973684651348	0.844935157053758
Merged-chr16-20358061-4	chr16	20357966	20358166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013790, intron 24 of 29)	intron (NM_013790, intron 24 of 29)	-32662.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	6.52202382113872	6.15131957148037	6.49077749147545	6.82908798922831	6.37698316158926	6.31047716505452	6.22497958629378	6.45290002238859	-0.281815719540766	0.24953360702656	0.56056659664016
Merged-chr10-8870567-4	chr10	8870474	8870674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	15496.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	8.59935729272052	8.78594265601504	8.75220374700741	8.54021926587554	8.56424021863669	8.79238057882499	8.42556875151146	8.42806486317767	-0.138564321461012	0.397638869823253	0.695998272762507
Merged-chr17-46645754-2	chr17	46645662	46645862	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001316742)	promoter-TSS (NM_001316742)	318.0	NM_001357130	74764.0	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	5.8301158206296	5.39869727831675	5.16287428909893	4.96039537203447	5.68705022835746	5.33855048597753	5.26642325481946	5.25755837955526	0.0746681098037874	0.827966371758409	0.934007956519098
Merged-chr12-75529593-4	chr12	75529492	75529692	+	908.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012024, intron 2 of 13)	intron (NM_012024, intron 2 of 13)	66608.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	5.27070278330828	5.17633115337906	5.02004496432115	5.43741879853435	4.54649556041849	4.93027108749184	5.3272304421988	4.86961672542958	-0.584333044350661	0.0949823463383152	0.337196875888081
Merged-chr4-132620123-3	chr4	132620028	132620228	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-18918.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	4.21220812790734	3.82545825776397	3.91674287793612	3.31000590854734	5.20490669177313	5.23130803082847	4.97422465430411	5.02622041148063	3.0794221208737	5.50155926046675e-13	6.17658496215714e-11
Merged-chr19-59460839-1	chr19	59460739	59460939	+	544.0	f1_balb.idr	intron (NM_010132, intron 1 of 2)	intron (NM_010132, intron 1 of 2)	2149.0	NM_010132	13797.0	Mm.245394	NM_010132	ENSMUSG00000043969	Emx2	Pdo	empty spiracles homeobox 2	protein-coding	2.79534765236895	2.64525963334234	2.79572083876898	2.7069690197403	2.54839437972552	2.48928151857145	2.78493161961568	2.67202944421099	-0.543042100699474	0.413889760080893	0.708792686767345
Merged-chr4-43470496-4	chr4	43470382	43470582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	13227.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	6.64338903857852	6.31608639606058	6.52541645599187	6.70931924939428	6.17560431008079	5.96175286025945	6.19490932679538	6.14051467267783	-0.65722120750379	0.00430127705092656	0.0424280209545318
Merged-chr1-57837180-5	chr1	57837076	57837276	+	806.6309809999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144882, intron 3 of 13)	intron (NM_144882, intron 3 of 13)	-8395.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	2.81205253858158	2.91930184302795	2.87479715716034	2.5367039917201	2.56714988668558	3.26444885535382	2.66964006797174	2.52860935984609	-0.00393432491092542	0.995627283938102	0.998390499611594
Merged-chr1-156620229-4	chr1	156620154	156620354	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	54085.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	4.4072424010911	4.18310680387821	4.48427164810287	4.30047617906559	4.25843987120924	4.11650543997099	4.02977976626766	4.19150154282414	-0.460832760569467	0.247708181244833	0.558890166868946
Merged-chr18-55357478-4	chr18	55357375	55357575	+	881.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-364884.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	4.8928808185633	5.12406846062346	4.9995403187898	5.43832643479262	4.68566035889428	4.69460678231337	5.19054944068803	4.69229592837938	-0.621364744090352	0.0809250500782901	0.308657386106667
Merged-chr11-110941734-4	chr11	110941639	110941839	+	724.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26294.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	3.80781005261258	3.86954418185255	3.58779560615904	3.94230856488602	4.22882586307564	3.8759095988742	3.74153985254554	3.39320856067042	0.119537589934071	0.817695475360504	0.929981783742416
Merged-chr11-19839126-4	chr11	19839019	19839219	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-85323.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	5.00550075225985	5.09046075201947	5.07355272946358	5.16426619216324	5.03678896085978	4.87457166271279	5.14263569136571	4.96801961881797	-0.154304094886909	0.614890853654855	0.834187509716563
Merged-chr18-16252127-5	chr18	16252043	16252243	+	832.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-534097.0	NM_199055	71367.0	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding	3.4929237138881	3.5763836411822	3.54497919354987	3.56830444656705	3.48500000486311	3.24107466025501	3.31324589473637	3.26194640337321	-0.730885264935796	0.159443345406912	0.446987707078322
Merged-chr3-96487994-6	chr3	96487907	96488107	+	776.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B2|LTR|ERVK	-35701.0	NM_001256181	329716.0	Mm.275223	NM_183223	ENSMUSG00000046317	BC107364	D730018G16	cDNA sequence BC107364	protein-coding	2.56353621483769	2.3516227294471	2.40138842885157	2.23715594423411	3.22769334139561	3.24333028387653	2.76679944709517	3.01681319642633	3.89602166110716	3.53070445083346e-07	1.34896410148081e-05
Merged-chr12-119230794-4	chr12	119230686	119230886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177290, intron 1 of 13)	intron (NM_177290, intron 1 of 13)	7490.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	5.92209021206851	5.70877050214219	6.11998304729768	6.33773532365723	5.88320701621312	6.14615621932187	6.1476249689947	6.48142012147722	0.181968085109173	0.510812582785317	0.775005008659931
Merged-chr10-75797844-4	chr10	75797771	75797971	+	792.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358778)	promoter-TSS (NM_001358778)	-140.0	NM_001358778	14871.0	Mm.2746	NM_008185	ENSMUSG00000001663	Gstt1	AI255817|Gstt1-1	glutathione S-transferase, theta 1	protein-coding	4.09073729568762	4.01456968196637	4.35457161513804	4.53437507093295	3.78336087564433	4.216426359832	4.29436532567146	3.9878408452472	-0.506199606837883	0.25816305525598	0.569968613835775
Merged-chr8-47989929-2	chr8	47989829	47990029	+	917.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 1 of 22)	CpG	622.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	4.12438755145824	3.57447024082013	4.41033040590265	4.37186741139441	3.75839617483514	4.15517394984852	3.9118304490763	4.21061722790602	-0.378978365849577	0.441677511692764	0.728595415995255
Merged-chr2-158606613-3	chr2	158606514	158606714	+	855.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040358, intron 1 of 2)	intron (NR_040358, intron 1 of 2)	4109.0	NR_040358	100045469.0	Mm.143404	NR_040358	ENSMUSG00000086496	Gm14204	-	predicted gene 14204	ncRNA	3.60145115606152	3.60148980116222	3.23939951034477	3.68170297372547	3.61233596627737	3.60681881870851	3.58755191018514	3.74889619764553	0.276435981156011	0.5804078956197	0.815718435955212
Merged-chr19-18591254-1	chr19	18591154	18591354	+	1000.0	f0_balb.idr	intron (NM_017375, intron 5 of 9)	MER20|DNA|hAT-Charlie	40559.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	2.91948978551208	2.96244901043068	3.23747188358745	3.4093337238445	2.42987986641378	2.60667572060193	2.57318408935626	2.49941296094553	-4.04732714774654	4.14062282160509e-05	0.000960330374125215
Merged-chr2-116999022-3	chr2	116998925	116999125	+	727.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98873.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	3.77128296272706	4.30904632089117	4.13229296370347	3.44600701187022	3.74663924266455	3.7260105562493	3.40490090061491	3.48062571781763	-1.04455269606293	0.0570106133622596	0.250213247534362
Merged-chr2-84488051-3	chr2	84487942	84488142	+	846.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-11267.0	NM_001177320	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	2.9010497266931	3.07356920549018	2.97714405561315	2.7840240042647	3.49977352907351	3.53594012053504	3.45337195425757	3.78292461441738	2.47537862777717	9.52788659601396e-06	0.000263270745348477
Merged-chr15-95826999-2	chr15	95826899	95827099	+	965.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	3073.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	3.01610694961678	3.54689358913854	3.38395128474111	3.11383929592907	3.38343645122739	3.26173997624823	3.26028857402601	3.327614602384	0.120358594168695	0.829662015746727	0.934618333601978
Merged-chr9-104039954-4	chr9	104039872	104040072	+	965.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028721, intron 24 of 26)	AT_rich|Low_complexity|Low_complexity	23149.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	4.3035264438498	4.5098311554274	3.8539893926863	3.97742924223746	4.49327961232072	4.09203565526226	4.32567572843705	4.12042457617269	0.229987766092165	0.601356590746482	0.82708957558551
Merged-chr6-124805336-1	chr6	124805236	124805436	+	1000.0	f0_c57.idr	Intergenic	PB1D10|SINE|Alu	-3325.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	4.99720579219085	5.04688457519119	5.23067438428122	5.14681389438883	5.46206394197614	4.98141996577714	5.20482831667175	5.28630612953097	0.272848727726066	0.372194718938961	0.676099595682082
Merged-chr16-33641984-4	chr16	33641891	33642091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 8 of 11)	intron (NM_001083902, intron 8 of 11)	-42475.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	5.66095853010776	5.76889560579615	5.55454150867219	5.80547007599299	5.62371283673559	5.73023722353811	5.49864825420371	5.84853416265465	-0.0556434242543473	0.83238205718109	0.935835439369668
Merged-chr2-29649904-4	chr2	29649818	29650018	+	818.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	30198.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	3.88013726192277	4.36867068862869	3.76033243440234	3.95760174179122	4.45187401150467	4.60423141041162	4.29820569796525	3.98896281126596	0.845314000016418	0.0593213753676102	0.256685803554711
Merged-chr10-44635448-4	chr10	44635416	44635616	+	926.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-176768.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	3.51785900424616	3.72686398191155	4.17161862586299	3.73314726472332	3.51428719347172	3.75319004790852	3.56422376263527	3.68698986838888	-0.537113063032118	0.28035021445978	0.592346638474506
Merged-chr9-44258464-4	chr9	44258366	44258566	+	946.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178420, intron 6 of 9)	CT-rich|Low_complexity|Low_complexity	-7002.0	NM_133226	170761.0	Mm.29872	NM_133226	ENSMUSG00000032105	Pdzd3	NaPi-Cap2|Pdzk2	PDZ domain containing 3	protein-coding	4.59115049442884	4.59882545472211	4.50820695105295	4.47697933230824	4.76829273269736	4.54946091500528	4.48787056621866	4.99943154834131	0.390944046677643	0.274001592165691	0.585733229082552
Merged-chr8-33731826-4	chr8	33731702	33731902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167921)	promoter-TSS (NM_001167921)	-112.0	NM_001167921	68153.0	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	8.14235799945977	8.30061310004843	8.312513562721	8.45954341651905	8.03375754060566	8.19694846456787	8.36765855942635	7.77986848841184	-0.257872347549716	0.162591718941736	0.451938418981083
Merged-chr5-125384666-4	chr5	125384572	125384772	+	859.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5345.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	4.71202280500405	5.44798520054691	4.35508179456146	3.95346525114827	4.80967722650044	5.28445199082361	4.38555870126028	4.62890338306232	0.129063454454402	0.856696633224367	0.946063986135646
Merged-chr2-79370826-4	chr2	79370724	79370924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048176, intron 2 of 12)	intron (NM_001048176, intron 2 of 12)	58164.0	NM_001048176	228094.0	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	5.93362971493527	5.73951926653131	6.22371107286019	6.36793465593842	6.05050226388702	6.01552806970808	6.03574875757271	6.12355425646671	-0.0754105661822113	0.772486708771708	0.910940763350478
Merged-chr16-23591835-4	chr16	23591705	23591905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18114.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	5.62009224034657	5.85748756308649	5.86873111283183	5.77663569649992	5.81920880521775	5.87577452250986	5.59287080587767	5.81879812321799	-0.00549738437374566	0.982670023351246	0.993825939075282
Merged-chr10-82697551-4	chr10	82697440	82697640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1467.0	NM_001081218	67933.0	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838|fkls	host cell factor C2	protein-coding	7.75361904327636	7.73331780950905	8.10899497153409	8.08090798136568	7.64861682196389	7.70390981775949	7.97036715525598	7.89372367640713	-0.166365473604499	0.372510709387172	0.676285177888533
Merged-chr16-70314214-7	chr16	70314145	70314345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028803, exon 1 of 16)	exon (NM_028803, exon 1 of 16)	296.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	7.91879379582382	8.27180542624708	8.67755858099542	7.83729220619285	8.09066820502494	8.26369186928696	7.96747575603645	8.09343131119153	-0.138884619270573	0.52525570617099	0.783229855070132
Merged-chr10-60757221-3	chr10	60757123	60757323	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4441.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	4.26255437968146	4.18193492769798	3.89901224516474	3.84432665129171	4.0110691923916	3.9665080078597	3.93425749542336	4.0456099478228	-0.154881436911588	0.721478894289773	0.888772195300388
Merged-chr19-12513201-1	chr19	12513101	12513301	+	694.666687	f0_balb.idr	Intergenic	L1MD|LINE|L1	-11205.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	3.04795178114565	2.92802342502156	3.34259920815511	3.27688655703841	2.38672196502102	2.53335776110626	2.65881893538502	2.58994215679229	-3.96914944303811	4.69584319834771e-05	0.00106958535364861
Merged-chr3-66985834-4	chr3	66985739	66985939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356273)	promoter-TSS (NM_001356273)	-128.0	NM_001356273	66880.0	Mm.316418	NM_025822	ENSMUSG00000034544	Rsrc1	1200013F24Rik|SRrp53	arginine/serine-rich coiled-coil 1	protein-coding	6.13771544813637	6.15577393856559	6.65319360135969	6.04767618777226	6.05609081928199	6.18640562998643	6.16716145086158	6.19447555221286	-0.167819310196837	0.504613363477542	0.770888948942188
Merged-chr7-45568302-4	chr7	45568194	45568394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025330)	TTS (NM_025330)	-1859.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	7.50669351908042	7.60066458894422	7.25072473739072	7.67493305331267	7.84273510565539	7.62822110036598	7.38456490041412	7.6096705386583	0.139523599824904	0.474196019734264	0.751607118426792
Merged-chr7-29126714-4	chr7	29126620	29126820	+	955.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1569.0	NM_009109	20190.0	Mm.439745	NM_009109	ENSMUSG00000030592	Ryr1	AI528790|RYR-1|Ryr|skrr	ryanodine receptor 1, skeletal muscle	protein-coding	4.67890627775394	4.871310840147	4.36989470060177	4.34598337373732	4.87828045173533	5.03358066332574	4.73340584016419	4.75293777726905	0.589071243083637	0.103854242070721	0.354187202163377
Merged-chr8-84067313-4	chr8	84067208	84067408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009055, intron 1 of 20)	CpG	472.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	7.85375768484877	7.99947663509869	7.6199937856603	7.513753212193	7.89368964360435	8.06168170967177	7.86053588509641	7.83490174849837	0.207905997803411	0.263266856178998	0.575223978756942
Merged-chr6-114457539-4	chr6	114457430	114457630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317124)	promoter-TSS (NM_001317124)	-992.0	NM_001317124	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	7.12071915802984	6.98189312534622	7.39935639066728	7.41735233001405	7.34200861437709	7.09267738419355	7.30403730832008	7.38462079055357	0.0518440999111974	0.795724990456132	0.920897975671128
Merged-chr15-74970587-4	chr15	74970492	74970692	+	891.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12838.0	NM_001358005	57248.0	Mm.358339	NM_020498	ENSMUSG00000022586	Ly6i	AI789751|Ly-6I|Ly-6M	lymphocyte antigen 6 complex, locus I	protein-coding	4.36028258675614	4.65733738281413	4.17488187970184	4.27030607844034	4.51039295742504	4.30110414407384	4.34143620742932	4.35822800289491	0.0243660525949662	0.950125110550806	0.982204611275017
Merged-chr13-30660338-4	chr13	30660214	30660414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 1 of 7)	intron (NM_134068, intron 1 of 7)	255.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	7.93340626934704	7.88628311704331	7.83886832807109	8.04699873046483	7.79217001752958	8.02383168471979	8.15771909369195	8.18517776595514	0.141733384329623	0.415323181908643	0.709557371410491
Merged-chr10-93488636-4	chr10	93488539	93488739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010401)	promoter-TSS (NM_010401)	-129.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	7.80070212496217	8.00676525951429	7.88452504631192	7.95864280488559	6.75899632723054	6.70384301386319	6.95553399193127	6.66426437071799	-1.53957751885944	5.48666979171342e-17	1.21284369287071e-14
Merged-chr12-8511207-4	chr12	8511123	8511323	+	967.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H2|LTR|ERVL-MaLR	-11214.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	5.8078857613436	5.19481324172039	6.2313987793017	5.74490158531309	6.5375019531977	6.75121207144736	6.65211043891547	6.10802289765158	1.13408457815173	0.000166503780764861	0.00312137626569161
Merged-chr5-103706199-4	chr5	103706112	103706312	+	860.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47950.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	4.71050606274407	4.20114560317176	4.12289507196521	4.31359089215739	4.73915838864962	4.46439775483464	5.05962316627356	4.87785678614535	0.983392614672983	0.0115709810452839	0.087571595940698
Merged-chr5-123891183-4	chr5	123891052	123891252	+	967.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11132.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	5.03314612045242	5.25653604201034	4.93132275875069	4.8902943602994	5.22068430220638	4.83285655874893	4.71767445709495	4.85476224547294	-0.185651459565238	0.585474741236293	0.818172766912737
Merged-chr6-70872279-4	chr6	70872188	70872388	+	985.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010121, intron 2 of 16)	intron (NM_010121, intron 2 of 16)	27773.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	5.40491393724155	5.8032213725311	5.06446977885705	5.12906226835283	5.27121306716488	5.13196082427643	4.96747010597401	5.09609858289628	-0.465374591756107	0.165463772988342	0.45614042980392
Merged-chr9-72530437-4	chr9	72530324	72530524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045735, intron 1 of 2)	intron (NR_045735, intron 1 of 2)	1434.0	NR_045735	75115.0	Mm.280755	NR_045735	ENSMUSG00000096986	4930509E16Rik	-	RIKEN cDNA 4930509E16 gene	ncRNA	5.75143337944946	6.37124224527805	5.95669906332607	5.93933098514047	6.34330179148296	6.49791377965295	6.32539191012464	6.28284367189298	0.513014536407587	0.038037963982487	0.195262097094291
Merged-chr14-54714289-4	chr14	54714182	54714382	+	956.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2108.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	5.40876478948781	5.64903286453875	5.38226931500201	5.25624405902233	5.17042310077057	4.93217287567859	4.97234848648215	5.16786594569362	-0.650972467475462	0.0335866531747676	0.180441119052516
Merged-chr4-14864750-4	chr4	14864654	14864854	+	972.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028264, intron 1 of 6)	intron (NM_028264, intron 1 of 6)	535.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	5.05001337818017	4.65422993138611	5.30167214229912	5.09395437087237	5.13931909414844	5.2595199072552	5.21738258306948	5.35350400803728	0.368459628591402	0.248337969290098	0.55943438668544
Merged-chr9-48745175-4	chr9	48745083	48745283	+	927.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033324, intron 2 of 6)	intron (NM_001033324, intron 2 of 6)	90762.0	NM_001033324	235320.0	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	4.30715296179338	3.84299613347353	4.48563292052493	4.15937645273051	4.36078358649233	4.81370901787794	4.464497769912	5.06878489007375	1.1072364885785	0.00931311454403375	0.0750309202184242
Merged-chr3-159840996-3	chr3	159840871	159841071	+	691.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356350, intron 1 of 12)	intron (NM_001356350, intron 1 of 12)	1321.0	NM_001356350	68151.0	Mm.6766	NM_026582	ENSMUSG00000028173	Wls	5031439A09Rik|AI173978|AI987742|EVI|Gpr177	wntless WNT ligand secretion mediator	protein-coding	3.37127557384588	3.25005300388308	3.42660585557359	3.28356932113486	3.06416772155921	3.36786406424435	3.35850060715949	3.62276468277791	0.112456838456394	0.836073379416252	0.93760163289947
Merged-chr16-73473772-4	chr16	73473670	73473870	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	810621.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	5.6733367331475	5.53975467461397	6.18062370668853	6.88353716513785	4.98916120539383	4.9793386170781	5.74396979563245	5.24526712633639	-1.51166570038399	0.000135389120054448	0.0026187125479227
Merged-chr4-53218901-3	chr4	53218809	53219009	+	953.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27287.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	4.43017073116436	4.02087964639187	4.53082590700075	4.21116010834796	3.76953970918758	3.62450367806415	3.62501005126881	3.63620136447438	-1.80880579565014	0.000172420670656739	0.00321612445405556
Merged-chr2-102700937-4	chr2	102700829	102701029	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 1 of 10)	intron (NM_001077514, intron 1 of 10)	-5509.0	NM_011393	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	5.38196514668735	5.47604025717119	5.61547205986591	5.75603576037818	5.00838991580832	4.91690620755471	5.03728102676651	5.22870900467155	-0.959098798369599	0.00137270233175389	0.0173980732321777
Merged-chr2-180025440-3	chr2	180025323	180025523	+	857.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177727, intron 1 of 8)	CpG	436.0	NM_177727	241846.0	Mm.21577	NM_177727	ENSMUSG00000039108	Lsm14b	9430078B04|BC040823	LSM family member 14B	protein-coding	4.03789534682257	3.6897226726617	4.22135624323043	3.97048364765964	4.04555757940532	4.1634641888695	3.97170651711873	4.51938508143928	0.518805448150174	0.243671040568051	0.554696846507397
Merged-chr10-98780289-4	chr10	98780191	98780391	+	757.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-134351.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	3.62490276282275	3.97428292709457	3.84249059666506	3.82291711816939	4.06623673891475	3.79964261807256	3.87542886482205	3.84029105205668	0.238178515407165	0.594825022112935	0.823614837620898
Merged-chr18-68499156-3	chr18	68499028	68499228	+	898.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69808.0	NM_001301372	17200.0	Mm.426053	NM_008560	ENSMUSG00000045569	Mc2r	ACTH-R|ACTHR|MC2-R	melanocortin 2 receptor	protein-coding	3.3589796672983	3.54525146285865	3.70974185113987	2.91448017960278	3.08248173548236	3.35522453657738	3.6022657714534	3.0349993096757	-0.439324294982335	0.482917167766092	0.757463266863053
Merged-chr19-6979228-1	chr19	6979128	6979328	+	586.0	f0_balb.idr	intron (NM_008020, intron 1 of 5)	intron (NM_008020, intron 1 of 5)	164.0	NM_001360288	14227.0	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	3.64820747438666	3.83980538778905	3.59440785499485	3.37185951268525	3.73384289531539	3.59453012518438	3.58041565096934	3.84309915898673	0.248423111864865	0.612491156644304	0.832789074284334
Merged-chr9-103345745-4	chr9	103345655	103345855	+	946.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_176979, exon 25 of 28)	exon (NM_176979, exon 25 of 28)	19224.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	3.81235633562389	3.97880886600413	4.23542075349967	4.26192511063714	4.4743567952904	4.40738989418314	4.38381300090644	4.36140102797857	0.752025390546329	0.0666258764234764	0.27515887774567
Merged-chr9-66918808-4	chr9	66918698	66918898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	907.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	5.53224602063268	5.86439674574427	5.47784221329574	5.24393639307829	5.87924952490247	5.70771021515747	5.30152530040457	5.08031060998393	-0.00296595891821312	0.992885130912135	0.997440362361293
Merged-chr4-55623580-4	chr4	55623479	55623679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91104.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	8.15860409202613	8.32422705695186	8.0335801455499	8.07168578641493	8.00317607681803	8.0251358673356	8.02793774779579	7.78705065396695	-0.238200836173051	0.152257228352855	0.436220300550268
Merged-chr16-49876315-4	chr16	49876207	49876407	+	989.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 3 of 9)	intron (NM_010581, intron 3 of 9)	20653.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	4.75320495916437	4.68320790431011	4.49530790628188	4.81309404788324	5.08012456852335	4.80808803501704	4.91193911241118	5.20520427132968	0.626265278602471	0.0622722504729334	0.264063682435562
Merged-chr17-56758271-4	chr17	56758143	56758343	+	704.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008738)	promoter-TSS (NM_008738)	-695.0	NM_008738	18188.0	Mm.8074	NM_008738	ENSMUSG00000039481	Nrtn	NTN	neurturin	protein-coding	3.90245357305512	3.82125281973907	3.85624355668054	3.30681325942088	3.64977815232588	3.824716717385	3.83928412022555	3.64779296561898	0.0309336493647227	0.951027355074791	0.982556219406068
Merged-chr8-123950321-3	chr8	123950243	123950443	+	872.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1078.0	NM_172288	234865.0	Mm.267812	NM_172288	ENSMUSG00000039509	Nup133	mermaid	nucleoporin 133	protein-coding	3.54391035412035	3.15810715010512	3.06728678382502	3.16897304132992	3.37861505717883	3.71236641519691	3.31461082470821	3.54228031549334	0.870239144724397	0.109841042884015	0.366011684445545
Merged-chr12-30911605-4	chr12	30911455	30911655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013709)	promoter-TSS (NM_013709)	57.0	NM_021330	11431.0	Mm.359831	NM_021330	ENSMUSG00000044573	Acp1	4632432E04Rik|AI427468|Acp-1|LMW-PTP|Lmptp	acid phosphatase 1, soluble	protein-coding	7.64774662857335	7.74011151894507	7.99210110491851	6.81875597250979	7.43925831335166	7.55179094252539	7.51783855135476	7.27323383173829	-0.213210846305923	0.409387154747717	0.704986157609834
Merged-chr4-62525400-4	chr4	62525251	62525451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177607)	promoter-TSS (NM_177607)	-18.0	NM_001356420	214106.0	Mm.73212	NM_177607	ENSMUSG00000058046	4933430I17Rik	bN189G18.7	RIKEN cDNA 4933430I17 gene	protein-coding	7.15704007935848	7.25141849217872	6.85460852350673	6.87407280857029	7.59394775038602	7.77566130739047	7.57780273284521	7.33829360214574	0.727015400136864	0.000293355738366948	0.00497872391540796
Merged-chr7-132813811-4	chr7	132813677	132813877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_212473)	promoter-TSS (NM_212473)	-581.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	6.07130859755115	6.14701869478166	5.69744236246246	6.14877920994534	5.83039233731709	5.60746374672987	6.17495540458987	6.06803747711235	-0.158390042661641	0.554350438310596	0.800735743340799
Merged-chr10-43842027-4	chr10	43841918	43842118	+	920.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	16111.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	4.21204725438177	3.99860220408014	4.16998343644576	4.05889777249262	4.1766199752209	3.88463611920236	4.10764317110469	3.92963638140058	-0.18014988976775	0.667714014155871	0.862625522970828
Merged-chr17-65662833-4	chr17	65662748	65662948	+	992.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 6 of 6)	intron (NM_133685, intron 6 of 6)	-20644.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	5.40858130970312	5.79488803382084	5.78267803949042	5.53842347671238	5.28992068258191	5.36658894503461	5.19713394932068	5.00105516465331	-0.733500564941774	0.0126006944207584	0.0929916877320024
Merged-chr13-76024842-4	chr13	76024719	76024919	+	984.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6107.0	NM_001131069	218341.0	Mm.266515	NM_178916	ENSMUSG00000043190	Rfesd	AI256775|D030068K09	Rieske (Fe-S) domain containing	protein-coding	5.39609748460576	4.82461234920437	5.21874271492561	5.65976519232004	5.48416966812818	5.3288239268965	5.16103711000401	5.11578391119214	-0.07201038210154	0.832202552633022	0.935753947395642
Merged-chr19-9135652-4	chr19	9135550	9135750	+	988.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025610)	promoter-TSS (NM_025610)	-84.0	NM_025610	66514.0	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	5.9298827187037	6.02306758391255	5.64859247388151	6.10005897685793	5.84970356901712	5.28266892044911	5.62003288214535	5.28178955850192	-0.656016076463929	0.0258028416026138	0.15167399970538
Merged-chr8-72297166-4	chr8	72297075	72297275	+	961.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21887.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	4.29892224502087	4.45869616765284	4.6204024779825	5.1896385834553	4.48213784643277	4.53087639772398	5.03651728342012	4.77026063305112	0.0245471870248273	0.954173551200265	0.983707297020418
Merged-chr10-117746409-4	chr10	117746319	117746519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029875)	promoter-TSS (NM_029875)	-61.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	7.6416940720331	7.4819360971038	7.52672269040082	7.64827146583119	7.96803683789589	7.92645450413369	7.89386605762635	7.58539911250439	0.361548468304522	0.0402686816075226	0.202693196247921
Merged-chr18-62088133-4	chr18	62088055	62088255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91826.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	5.56099716354072	5.62575208861569	5.63871627963693	5.77517162669995	5.44192676779446	5.19177620208278	5.53396900415454	5.35864511642248	-0.465685036713913	0.0898820886708834	0.327399682181301
Merged-chr8-91070730-4	chr8	91070615	91070815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011250, intron 1 of 21)	intron (NM_011250, intron 1 of 21)	658.0	NM_001282000	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	6.73048734859946	6.477061785882	6.11325482720666	6.51619203485667	6.51737775907332	6.17674328067011	6.53926775898838	6.35021065497894	-0.102976664099549	0.666161432537339	0.861911413823008
Merged-chr15-31474093-4	chr15	31473989	31474189	+	968.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 20 of 25)	intron (NM_172606, intron 20 of 25)	-20400.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	5.41022542900833	5.04398347393382	5.89883316410559	6.0484538378423	5.18756326578545	5.00733062645025	5.54986002079604	5.7893834543874	-0.429168695790877	0.245024589837309	0.556170860493583
Merged-chr1-39851318-4	chr1	39851216	39851416	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3986.0	NR_040465	73426.0	Mm.396239	NR_040465	ENSMUSG00000101634	1700066B17Rik	-	RIKEN cDNA 1700066B17 gene	ncRNA	4.83398920380489	5.09471157197447	4.51286635841538	3.73627673577574	5.16079189225339	4.93688225242265	4.77521589142941	4.68062573244136	0.531046300881452	0.252507736352295	0.563795858270962
Merged-chr4-56070236-4	chr4	56070144	56070344	+	858.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	-537769.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.11086436131101	3.90487605120258	4.20182732139443	4.40896562691023	3.85332882450072	4.03156357031604	4.09367180440714	4.32345559793283	-0.260820335366869	0.553134209520326	0.799974396526481
Merged-chr10-85185330-4	chr10	85185140	85185340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007771)	promoter-TSS (NM_007771)	-186.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	7.99152393135907	8.01220948603462	8.07194665055189	7.58226195355024	7.92621000514261	8.28108233392885	7.84091730216393	8.24475000273228	0.211992845277263	0.284455249466348	0.596324963525583
Merged-chr4-55630447-3	chr4	55630342	55630542	+	922.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97967.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.7332540925873	4.32187141822854	4.66572803008365	4.74312796165836	4.01891443464532	4.28088424888949	4.32844203672708	4.29922708882925	-0.95093531990293	0.0156676262752623	0.108114975341434
Merged-chr12-32952789-7	chr12	32952765	32952965	+	869.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_044986, intron 2 of 5)	intron (NR_044986, intron 2 of 5)	924.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	3.00773877602204	3.04712268379915	3.00813310306202	2.75790502595707	2.92590102887306	2.92652607340884	2.81071312261194	3.06370562998527	-0.0742600124895909	0.902422917057883	0.963787729579172
Merged-chr4-138447632-4	chr4	138447540	138447740	+	897.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7508.0	NM_025451	66259.0	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	4.2252470465529	4.09344339917777	3.97760287034997	4.0108454994937	4.48369525551354	4.44123400724936	4.2935733194014	4.26763302687915	0.754136765839559	0.0525846631697639	0.238935444606487
Merged-chr17-24162152-3	chr17	24162053	24162253	+	904.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172935, intron 3 of 10)	intron (NM_172935, intron 3 of 10)	1580.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	3.66810336309359	3.29299507817798	3.6231771896602	3.70835881528793	2.83870342480447	3.08670920340278	3.10875799342507	3.36530158865811	-1.84719665319663	0.00273369943101071	0.0296845143859514
Merged-chr7-45403740-4	chr7	45403656	45403856	+	843.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2204.0	NM_010596	16495.0	Mm.12955	NM_010596	ENSMUSG00000038201	Kcna7	Kv1.7	potassium voltage-gated channel, shaker-related subfamily, member 7	protein-coding	4.01636936642098	4.49398950832464	4.27455055865363	4.08825258766247	4.79716679061326	4.44956450965165	4.34527805594083	4.56348184852634	0.77484087817607	0.0511335199899649	0.234678755520389
Merged-chr1-153498290-2	chr1	153498190	153498390	+	703.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10630.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	2.83131858894892	2.98488790736237	2.8315962639323	2.79088276286651	3.48794445048812	3.37600969129722	3.08199392020247	3.03140595295087	1.64142767961226	0.00554994564110986	0.0513123315915095
Merged-chr5-134258634-4	chr5	134258507	134258707	+	901.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359066, intron 15 of 32)	intron (NM_001359066, intron 15 of 32)	-28982.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	5.14241401839666	5.04530123451056	5.22320867460165	4.75988561594415	4.4762855362518	4.34133624229797	4.300329212608	4.41652084487377	-1.40870479741052	0.00016428430351693	0.00308619489048075
Merged-chr8-13645127-4	chr8	13645018	13645218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	L1MB8|LINE|L1	32469.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	6.41409855232904	6.04273327121436	6.85029498960027	6.94202825844418	6.01768703929104	5.57750784027923	6.06011860468678	6.06522468780318	-1.01126266010087	0.000534105509610913	0.00814244936144682
Merged-chr7-4099018-3	chr7	4098929	4099129	+	908.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033568, intron 5 of 8)	ORR1B1|LTR|ERVL-MaLR	-20501.0	NM_001109765	57776.0	Mm.29729	NM_021324	ENSMUSG00000030428	Ttyh1	4930459B04Rik|6330408P11Rik|TTY1|mTTY1|tty	tweety family member 1	protein-coding	3.5041211669385	3.92050553505484	3.72627654941361	3.52272653197885	4.79840362683986	4.89055319398827	4.95934846406379	4.68117439564885	2.8787332583119	8.65305407993097e-12	7.8661013583066e-10
Merged-chr17-81616624-4	chr17	81616522	81616722	+	914.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	121765.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	4.56355814979777	4.26043426245992	4.49204439893284	4.3023121160112	4.24192175585715	4.32695563440429	3.92697237227028	3.9400541706258	-0.689453104038694	0.097741814834137	0.342560156519749
Merged-chr13-67728216-1	chr13	67728116	67728316	+	562.0	f0_c57.idr	intron (NM_145622, intron 1 of 3)	intron (NM_145622, intron 1 of 3)	957.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	2.99242529788084	2.84111643317888	2.79553891922564	2.93329742307194	3.20375528604185	3.03841301360225	2.98217325781395	3.21438941145804	0.913745030271323	0.117082092516005	0.378533169658281
Merged-chr7-64064991-3	chr7	64064872	64065072	+	959.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	-88863.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	4.20893089479671	3.42842908081692	3.76769652188117	3.82170885410608	3.18634311806488	3.3571047186892	3.54472118610047	3.49913717776596	-1.41498914220337	0.0104319862954419	0.0814213018370303
Merged-chr3-22010108-4	chr3	22010011	22010211	+	937.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66541.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.41098101504574	5.00687075022688	5.12659754551174	5.28086914533939	4.7392567409737	4.89500690722825	5.16340317261926	5.05740036218728	-0.482568908059272	0.134298398108923	0.407935723647066
Merged-chr2-22811639-4	chr2	22811526	22811726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	37299.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	5.59163043412992	5.83814101903777	5.61823236283676	5.51686256819602	5.16898316541795	5.3456977663952	5.56434370186751	5.56252498195452	-0.397797348667601	0.162585407478332	0.451938418981083
Merged-chr17-65605110-4	chr17	65604979	65605179	+	891.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355402, intron 1 of 6)	Tigger7|DNA|TcMar-Tigger	8476.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	4.17660023887301	4.24825242039378	4.22453076261388	4.39590126728418	4.24083980598334	4.14796629573906	4.41739083689864	4.51127806856729	0.144470014811054	0.712292664346369	0.884821632731418
Merged-chr5-3247495-4	chr5	3247377	3247577	+	893.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96416.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	4.15114705222298	4.0356962288187	4.53901814097333	4.71927848266012	4.49044963522956	4.42205333532849	4.27527781127433	4.04511698382025	-0.194227907650687	0.65682306944748	0.856907371106549
Merged-chr5-41740023-4	chr5	41739998	41740198	+	847.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24122.0	NM_007524	12020.0	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	3.76828327825984	3.85694695947526	3.65071355625833	3.29684539379103	4.45783072875753	3.83381435299826	4.09578060861927	4.31229113810153	1.54336341373286	0.00134933624652568	0.0171569140213382
Merged-chr9-46273107-4	chr9	46273017	46273217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011752)	promoter-TSS (NM_011752)	53.0	NM_011752	22687.0	Mm.17519	NM_011752	ENSMUSG00000032078	Zpr1	AI303781|Zfp259|Znf259	ZPR1 zinc finger	protein-coding	7.02000630509969	7.19063342927198	6.45913775990721	6.84932102970341	7.11288777328372	7.05565336964627	7.12428667930999	7.06433363672092	0.251356542408493	0.24944656894583	0.560459511710709
Merged-chr10-26773186-4	chr10	26773062	26773262	+	985.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	650.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	4.53467495602572	4.63431287789734	4.57514247858806	4.79586271202264	4.61071547587572	4.1774736049394	4.55391778194265	4.31316040725669	-0.476795383305358	0.207927261232462	0.512059458439103
Merged-chr2-26409219-4	chr2	26409112	26409312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290437)	promoter-TSS (NM_001290437)	7.0	NM_033134	64436.0	Mm.330070	NM_033134	ENSMUSG00000026925	Inpp5e	1200002L24Rik|72kDa|mKIAA0123	inositol polyphosphate-5-phosphatase E	protein-coding	7.66326301608805	7.89856972713911	7.58656146638183	7.74857172155619	7.54703610060539	7.58167867982114	7.86298023115885	7.65932158460335	-0.0873850094196994	0.623379060756587	0.838941930944268
Merged-chr13-37348334-4	chr13	37348228	37348428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	2983.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	6.48503697042863	6.7268975450281	6.64422033629329	6.44544991291553	6.30024692318215	6.77443909051235	6.04052027410845	6.62454919936808	-0.171547445310113	0.486992000934652	0.760500299133997
Merged-chr5-31488094-4	chr5	31487990	31488190	+	946.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026296, exon 2 of 2)	exon (NM_026296, exon 2 of 2)	2231.0	NM_026296	67656.0	Mm.23355	NM_026296	ENSMUSG00000029138	4930548H24Rik	AI427865	RIKEN cDNA 4930548H24 gene	protein-coding	4.86287991594284	4.54967962264458	4.42290853900892	4.95384451094888	4.60898611633958	4.77548335324431	4.84013633665213	4.67879191163883	-0.0157840847403931	0.965336843228967	0.987743024598971
Merged-chr13-45968350-4	chr13	45968271	45968471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3380.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	6.24082233131468	6.43026590101392	6.54375600191217	6.13157800131079	6.14722926114751	6.2352633468081	6.00560011991871	5.96337955299911	-0.368788622967643	0.125193990499387	0.392701526959098
Merged-chr11-121801370-4	chr11	121801283	121801483	+	957.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-28835.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	4.35661720191803	4.50050181857588	5.01056837127364	4.95714959111328	4.73058685023755	4.14758759072109	5.04362850050151	4.740712547798	-0.076183103644165	0.857361300874818	0.946273938640331
Merged-chr16-30974734-4	chr16	30974637	30974837	+	969.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	L1MA9|LINE|L1	106695.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	5.02073113660721	4.88280614263678	4.54867392875975	5.00818409584029	4.88914016360582	5.31727177476682	4.99704143071336	4.87906767028069	0.271091367931619	0.426166769189263	0.717610760666238
Merged-chr18-67612428-3	chr18	67612347	67612547	+	640.166687	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	28908.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	3.4343545405743	3.66203223172067	3.61092501360985	3.7213955978072	3.86591354151673	3.61133065838327	3.92886678576913	3.55293628024564	0.408083639234613	0.398959720870852	0.697026434595773
Merged-chr5-124024987-1	chr5	124024887	124025087	+	1000.0	f0_balb.idr	intron (NM_177876, intron 1 of 3)	L2b|LINE|L2	7273.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	5.15011790305934	4.9111973402853	4.87008009035848	5.2464537158505	4.51298974440659	4.64199514701344	4.39395004211896	4.55135747364316	-1.13620027883556	0.00115305641274281	0.0150953471404489
Merged-chr7-126135113-4	chr7	126134993	126135193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 9 of 23)	intron (NM_028816, intron 9 of 23)	-52682.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	7.478444569647	7.45191511192196	7.43258307818757	7.34392624559619	7.31775599867112	7.378427149616	7.531692888189	7.39828532290956	-0.0220899653168689	0.898795607333835	0.962303043708153
Merged-chr13-75823393-4	chr13	75823289	75823489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16496.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	6.61654312255052	6.83969201928062	6.51604559430442	7.24371143718162	7.1161908313099	6.72869602129259	6.91033029876358	6.52890276641274	-0.00975459261170028	0.969621653758985	0.989034602712618
Merged-chr4-11191306-4	chr4	11191222	11191422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009830)	promoter-TSS (NM_009830)	-29.0	NM_001037134	12448.0	Mm.35867	NM_009830	ENSMUSG00000028212	Ccne2	-	cyclin E2	protein-coding	6.41384105133684	6.74044273879158	6.68384023363296	6.49765610481877	6.80290325123073	6.73367576199855	6.96732636031948	6.93776388447984	0.393778313487149	0.0566353327332068	0.249267976637354
Merged-chr6-108719027-4	chr6	108718935	108719135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58101.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	7.02445106599586	7.27367654462134	7.10087288991789	7.38478417815844	7.29509775080377	7.29020640368006	7.41229974691283	7.34838519187164	0.16040506348586	0.393691833147239	0.692805354815746
Merged-chr2-6705056-3	chr2	6704933	6705133	+	899.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	16629.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	3.71393894752942	3.09310685488556	3.500287479466	3.7240872192395	3.62160645700131	3.49364245091047	3.74635639518849	3.89527367279298	0.4921326296873	0.369349682657082	0.673651951566863
Merged-chr7-16924147-4	chr7	16924058	16924258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007590)	promoter-TSS (NM_007590)	-126.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	8.69195291632162	9.03428621190701	8.86003763090836	8.76643967090599	8.70383229456805	8.72834883748569	8.70481500841493	8.38388062612563	-0.256839898488673	0.117635613309669	0.379357798104791
Merged-chr4-55652028-4	chr4	55651921	55652121	+	873.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119546.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.69743022464344	5.40421434715805	5.15723208046229	4.86681815732514	4.64757512994233	4.74340526535297	5.07147696514245	5.12374804731226	-0.300069914512453	0.411542173180445	0.706983644948856
Merged-chr16-58503622-3	chr16	58503531	58503731	+	936.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	MTD|LTR|ERVL-MaLR	19795.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	4.25199883430562	4.20386850809659	3.8329179434464	4.02727878047968	3.6253428457109	4.00906259228907	4.01904704498725	4.03415126142546	-0.443980355977009	0.325225606543846	0.636798370669097
Merged-chr13-23518170-4	chr13	23518059	23518259	+	993.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Ser-TCA_|tRNA|tRNA	-12885.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	5.0303423522424	5.38040544291658	4.71848163067707	4.7769067610904	5.47620547482927	5.17141754192833	5.10609895739512	5.09534503226487	0.438977487255137	0.198531036691325	0.500061596682538
Merged-chr1-125471578-4	chr1	125471571	125471771	+	948.699402	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-35944.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	3.70363346162561	3.73046557511865	3.7535446286035	3.63218297309261	3.71110464287584	3.53743123649942	3.58525336674656	3.59713076233197	-0.269700881742166	0.56561267119323	0.807633940958955
Merged-chr13-101847374-1	chr13	101847274	101847474	+	578.666687	f0_balb.idr	Intergenic	Intergenic	-79157.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	3.00181207900698	2.92441046283033	2.89427288239589	2.87080963029783	2.45784147964273	2.60634339792877	2.49636557135353	2.57514779236289	-2.18328196543045	0.00289780685558475	0.0311329639980587
Merged-chr11-79368414-3	chr11	79368308	79368508	+	743.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 1 of 57)	MLT-int|LTR|ERVL-MaLR	28516.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	3.66200453729493	3.38282402848897	3.09879079909117	3.45174535758257	3.27969165984882	3.34491069605895	3.60019194169032	3.35252889158862	-0.0584566554191388	0.914372981728346	0.967966085825669
Merged-chr16-20672713-4	chr16	20672628	20672828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304432)	promoter-TSS (NM_001304432)	1.0	NM_001304432	208643.0	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	7.92713906502807	7.99726093637025	7.69364008065115	7.62992307683258	7.84090546049538	7.97491218277938	7.68077841654444	7.48051086077708	-0.07609829504161	0.692440903673605	0.87491802620234
Merged-chr17-24159080-4	chr17	24158981	24159181	+	949.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172935, intron 3 of 10)	intron (NM_172935, intron 3 of 10)	4652.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	4.9678339470793	4.7464377302138	4.66494754220984	4.9437467332034	5.06568129355569	4.66322967644801	5.10170761979676	5.09350513998639	0.305538853462728	0.359808458167543	0.665475022577823
Merged-chr5-134907330-3	chr5	134907240	134907440	+	845.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029681)	promoter-TSS (NM_029681)	-607.0	NM_194065	76629.0	Mm.159750	NM_029681	ENSMUSG00000040576	Tmem270	1700111I05Rik|Wbscr28	transmembrane protein 270	protein-coding	3.42421709249552	3.71254894521348	3.53991276909617	3.86382415595823	3.39827941648824	3.76312141725266	3.52623422948325	3.36141407719964	-0.455308372419481	0.3794695404946	0.6820084441689
Merged-chr2-119173008-3	chr2	119172902	119173102	+	889.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177157)	TTS (NM_177157)	-1507.0	NM_001039223	623781.0	Mm.389344	NM_001039223	ENSMUSG00000055926	Gm14137	-	predicted gene 14137	protein-coding	4.15309285937075	4.33487955893352	4.28350062206784	4.73452294222711	3.81651546833985	3.71573913521147	3.83229205209003	4.00699472353539	-1.50871064891228	0.000896155976790769	0.0123459173661037
Merged-chr6-148405867-3	chr6	148405765	148405965	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198967, intron 5 of 19)	intron (NM_198967, intron 5 of 19)	38487.0	NM_198967	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	3.84790331504061	3.64266245174583	3.78069020849679	3.43245875873851	4.94553129364694	4.92354001334299	5.10364259661303	5.12755546045425	3.34356246808427	4.52411749795533e-17	1.02229256948242e-14
Merged-chr17-37538604-4	chr17	37538489	37538689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8632.0	NM_001005485	545205.0	Mm.383371	NM_001005485	ENSMUSG00000090675	Olfr111	-	olfactory receptor 111	protein-coding	7.04786776834169	6.46227734356123	7.40267769050594	7.01748003821289	6.96587131302461	7.01763465977559	7.11690745057809	6.94410600791604	-0.0126328453043583	0.957687472066644	0.984870901124062
Merged-chr6-100211399-4	chr6	100211280	100211480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75978.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	5.69530917111478	5.47921902126748	6.04518011431152	6.3485666845044	5.88317297602876	5.76318173433037	5.9089021046746	6.06098448689638	-0.074314492601538	0.803504684155472	0.924176454932574
Merged-chr2-35061113-2	chr2	35061013	35061213	+	928.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_010406, intron 1 of 40)	intron (NM_010406, intron 1 of 40)	328.0	NM_010406	15139.0	Mm.2168	NM_010406	ENSMUSG00000026874	Hc	C5|C5a|He|Hfib2	hemolytic complement	protein-coding	2.45146016981458	2.25766496938464	2.30692769222064	2.4876557745631	2.47653600365012	2.68836317168613	2.68941922657034	2.58093670185559	1.1896432688919	0.0971823856060542	0.341614155022635
Merged-chr5-16045575-3	chr5	16045476	16045676	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110843, intron 3 of 38)	intron (NM_001110843, intron 3 of 38)	110885.0	NM_001110844	12293.0	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding	3.73638760420665	3.30904062609627	3.82533550528097	3.83438053708706	3.27783284480661	3.2836381586195	3.47081534000459	3.2384083936596	-1.29187621799707	0.0179579133515516	0.118982250251335
Merged-chr12-73898897-3	chr12	73898805	73899005	+	965.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2419.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	4.67121862353145	4.22117182104766	4.48841346607134	4.73767582139691	4.13571124061028	4.14176250889922	4.05555069391721	4.5620746632295	-0.745015687818825	0.0727435915553166	0.290150511327058
Merged-chr8-84981104-4	chr8	84980984	84981184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2336.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	8.00438759232917	7.97026351274625	8.43262161514937	7.74283856299489	7.91934659127118	7.90713762200085	7.78027241044362	7.9385793737543	-0.21430905139578	0.276055744109614	0.588116016284595
Merged-chr5-44284569-3	chr5	44284448	44284648	+	680.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57942.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	3.1676065995683	3.1094873129823	3.16801253776962	3.29236520404772	3.17052472626435	2.87149082762852	3.03712884146221	3.37797386126451	-0.234642889767213	0.688383683901366	0.87273863571837
Merged-chr11-116109670-4	chr11	116109580	116109780	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172570, exon 1 of 6)	exon (NM_172570, exon 1 of 6)	555.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	4.73504554105278	4.6513764006639	4.26408052467365	4.75367080653871	4.49452471891161	4.49334042060568	4.60181177041783	4.86830834541504	-0.0107777618479619	0.976969507991954	0.991823379535312
Merged-chr8-94909087-4	chr8	94908980	94909180	+	814.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033533, intron 4 of 8)	intron (NM_001033533, intron 4 of 8)	9018.0	NM_001033533	234582.0	Mm.277871	NM_001033533	ENSMUSG00000063605	Ccdc102a	BC027663|Gm586	coiled-coil domain containing 102A	protein-coding	4.09410763599017	4.04997276217737	3.94316562846233	3.65324584281657	3.86243579765438	4.35883087407517	4.40709147112863	4.35023458491825	0.836282568341372	0.0609343054969674	0.260925117909518
Merged-chr18-53250872-4	chr18	53250775	53250975	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	5213.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	5.24236886380288	4.83176040377415	4.58856561239585	5.26388740281647	5.08748616449568	4.81564527290852	5.0988045452814	5.21088640102346	0.0706849644511573	0.840852106208901	0.939428850539057
Merged-chr7-110556351-3	chr7	110556259	110556459	+	731.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 2 of 40)	intron (NM_177324, intron 2 of 40)	58561.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	3.47756417862147	3.24982211215087	3.25420126829471	3.56134255161629	3.02572215462967	3.36711923765051	3.18100891532616	3.62107498473302	-0.300439574719232	0.599395245465093	0.826316125212269
Merged-chr3-121294403-3	chr3	121294306	121294506	+	804.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155539, intron 1 of 2)	B2_Mm2|SINE|B2	2666.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	3.28960772723509	3.38018944161384	3.35090040248484	2.84077178211369	3.61671298890791	3.46740343926958	3.73847043384274	3.46285920306638	1.24379794188637	0.0267486544688468	0.155428549901974
Merged-chr14-60265146-4	chr14	60265024	60265224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144843)	promoter-TSS (NM_144843)	-81.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	8.2758534058214	8.52193884968047	8.08407369511361	8.0484235466661	8.10379075912818	8.19469467768677	8.23269804381371	8.05232613669889	-0.123741126438014	0.4848598573343	0.758880279356098
Merged-chr15-6579414-4	chr15	6579286	6579486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278269)	promoter-TSS (NM_001278269)	-461.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	6.86846819722666	6.83579848793178	6.60434930649474	6.49664789614265	6.69627334253497	6.36238293823246	6.38754727570275	6.30295471620355	-0.353177873218449	0.125510901260993	0.393314274934234
Merged-chr8-85554962-3	chr8	85554864	85555064	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019794, intron 1 of 8)	CpG	307.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	4.94613839383416	5.53114253885328	5.29263459733364	5.37896692127508	5.38066301082363	5.12619673950107	5.38127369049035	5.34809864737277	0.00666706792035823	0.982490699550438	0.993785782340495
Merged-chr8-40927791-4	chr8	40927673	40927873	+	989.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026840, intron 1 of 5)	intron (NM_026840, intron 1 of 5)	1540.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	5.04869594104246	4.82125687480786	5.14219960335563	5.27399995972703	4.77453997520503	4.77136464611218	4.9256675052643	4.71925865644103	-0.587461336982024	0.0759060615659786	0.297697810138564
Merged-chr6-24166952-3	chr6	24166858	24167058	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019481, intron 1 of 14)	MIR|SINE|MIR	1134.0	NM_019481	55961.0	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	5.93412247296171	6.00576376364423	5.78726984500757	5.77174419962147	3.86863075257106	4.04565057168827	4.09933881834574	4.11449140919909	-4.34982616143459	7.54713542870776e-21	2.87271418545449e-18
Merged-chr1-172514126-4	chr1	172514016	172514216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7014.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	7.89413406127833	8.01031721135669	7.81835037665504	8.11337196847848	8.31834751803319	8.2276566409133	8.35519438515753	8.03803614461237	0.34652430324739	0.0405847741027745	0.203608160496785
Merged-chr9-44604548-4	chr9	44604436	44604636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181324)	promoter-TSS (NM_181324)	-356.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	5.8326525195511	6.09486198117274	5.92846320873801	5.80592248206898	6.06293739493175	5.98555584249573	5.87536889817684	6.29653258189327	0.237025287573402	0.339656996764627	0.648832933028295
Merged-chr2-3788570-3	chr2	3788432	3788632	+	726.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75074.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	3.22122242161096	3.00505465859458	3.27597504925589	3.4842749882407	3.22653538349119	2.86681939044876	2.75534635798553	3.32607722749939	-0.747042482072206	0.262779315346547	0.574599683185422
Merged-chr11-51615785-4	chr11	51615694	51615894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3979.0	NM_026631	52530.0	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	5.7642670678725	5.92142706845608	5.42745970239396	5.56102835290458	6.0396624310172	5.81201926068134	5.9186836737875	6.06687472242512	0.470033801425623	0.0722587130241388	0.288849187442219
Merged-chr3-126613746-4	chr3	126613650	126613850	+	955.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	16799.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	4.51835716206519	4.59607688230163	5.21349763662609	4.84215768043219	4.9396473965622	4.6520257979241	4.70912010075695	4.94352308068443	0.00547673199566848	0.98802980793148	0.995370064932717
Merged-chr17-35870843-4	chr17	35870734	35870934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146710, intron 2 of 3)	intron (NM_001146710, intron 2 of 3)	4219.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	5.21178118488485	5.16165685801668	5.01009546448357	4.87313573541967	5.28303504452903	5.18692232610553	5.27654021566927	5.56034582703646	0.514891637739228	0.0899971870964304	0.327603598428168
Merged-chr8-27176983-4	chr8	27176875	27177075	+	972.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2329.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	5.2274286443657	5.03950700362861	4.64650398160522	4.79023487389845	5.43071697683801	5.3705765561068	4.87296796286208	4.96660196349893	0.481596872726776	0.165794998700398	0.456755694792725
Merged-chr1-174053225-4	chr1	174053142	174053342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2867.0	NM_146716	258711.0	Mm.377648	NM_146716	ENSMUSG00000047048	Olfr432	MOR123-2	olfactory receptor 432	protein-coding	7.08455977501504	7.83565063341931	7.84246847143101	6.99636895323368	7.15663431210888	7.82241854044415	6.86450586521646	6.47471849928287	-0.434247857315993	0.374951918123259	0.678070908583733
Merged-chr1-119492420-4	chr1	119492330	119492530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022327, intron 1 of 4)	RLTR26B_MM|LTR|ERVK	12352.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	5.51054421683189	5.1768360580365	5.61528206326183	5.74379722814729	5.30593979944147	5.35120478564342	5.79148952423549	5.20391341351855	-0.184713860168107	0.553786191293721	0.800413168519824
Merged-chr1-179488171-4	chr1	179488081	179488281	+	862.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	29860.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	3.78324191842066	4.05696982676492	3.95203410849871	4.10678190016784	4.10694854348829	3.96415906003879	4.47858743178138	4.35306314922008	0.634383100058721	0.142659389859545	0.420400459998864
Merged-chr5-27791624-4	chr5	27791508	27791708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018878)	promoter-TSS (NM_018878)	-58.0	NM_018878	55982.0	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	7.61948375621683	7.47243498122809	8.1930272390765	7.47985447847483	7.46396668795518	7.66307717966463	7.38030678855929	7.41194452867355	-0.313598035927993	0.155240121062459	0.440864849070569
Merged-chr11-23769825-4	chr11	23769726	23769926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	1144.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	6.70108303491717	6.92328827799958	6.95593653852294	7.04219491068852	6.97715410784139	6.86415860105734	7.28225431228788	6.71300266352296	0.0816872417221659	0.70506389893959	0.881587544161158
Merged-chr14-34363872-4	chr14	34363757	34363957	+	845.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8464.0	NM_183278	69134.0	Mm.27156	NM_183278	ENSMUSG00000043681	Fam25c	2200001I15Rik|Fam25	family with sequence similarity 25, member C	protein-coding	4.39376209273944	4.72627839711501	4.30728386409411	4.3560875688041	4.09843895435012	4.2911872563149	4.56725129753392	4.11077801757609	-0.426439473296666	0.294424303841872	0.606634274221694
Merged-chr4-88515821-4	chr4	88515732	88515932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6962.0	NM_010510	15977.0	Mm.1245	NM_010510	ENSMUSG00000048806	Ifnb1	IFN-beta|IFNB|Ifb	interferon beta 1, fibroblast	protein-coding	5.47142181966746	6.02795018590836	5.70167397353513	5.93135335740631	6.25052391685602	6.00172427397617	5.82035790241856	5.55930338866204	0.211597861995602	0.466588564966055	0.746420287776482
Merged-chr11-34025235-4	chr11	34025148	34025348	+	823.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-21680.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	4.36586302887264	4.14608140317866	4.40773156279807	4.6102976416937	4.24959350936002	4.31290252057331	4.26111151393225	4.13556515565269	-0.400913636644681	0.313325757103243	0.625190188185603
Merged-chr15-68259729-4	chr15	68259651	68259851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145888)	promoter-TSS (NM_001145888)	-895.0	NM_198644	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	5.5502599666118	5.2910098303344	5.18521045806034	5.26701286001293	5.18254999881788	5.11258758888208	5.39555120684148	5.18166881672878	-0.187879508607268	0.5245516296065	0.783001721652081
Merged-chr8-90841653-4	chr8	90841566	90841766	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 1 of 39)	intron (NM_177224, intron 1 of 39)	12831.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	4.15907262919444	4.36299761516434	4.52282907354762	4.29444697827321	4.44643810249065	4.17718695876847	4.84208198942374	4.6687347278687	0.49896691630349	0.205869471029869	0.509654391987863
Merged-chr10-78149291-4	chr10	78149194	78149394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	UCON26|Unknown|Unknown	20474.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	7.16117333069086	7.29008994236114	6.80384300849883	6.93935012516127	7.13997169830156	7.24661347299142	6.96054684179349	7.01611056664683	0.049859642283605	0.80837275863663	0.926064484042243
Merged-chr12-69199696-4	chr12	69199589	69199789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033222, exon 2 of 2)	non-coding (NR_033222, exon 2 of 2)	-1260.0	NM_027269	109065.0	Mm.107180	NM_027269	ENSMUSG00000020973	Dnaaf2	Ktu|TU54|kintoun|mknt	dynein, axonemal assembly factor 2	protein-coding	6.43333180619593	6.34372238759895	6.34372170141384	6.71324481165169	6.50353238156962	6.4234919059966	6.69533168512435	6.57825753530762	0.0991702919117274	0.659592993056502	0.858397075598215
Merged-chr10-82958508-4	chr10	82958431	82958631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-26966.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	7.33939635591021	7.36060230471139	7.82923749746799	7.45372414207961	7.54729235247819	7.48624161704394	7.50634735959231	7.37679332130708	-0.0328208478044732	0.86389958546237	0.948884460737394
Merged-chr15-103486827-4	chr15	103486725	103486925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153505, exon 25 of 31)	exon (NM_153505, exon 25 of 31)	-16209.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	6.29215189862977	5.94419280397374	6.31014186444235	6.04399505136313	5.68313057203211	6.00139816809944	5.79510380083425	5.63523051693333	-0.585446410441103	0.0222456930108648	0.137521815426467
Merged-chr4-34886710-4	chr4	34886594	34886794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3746.0	NM_013889	30046.0	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	6.29735173682492	5.86947078288517	6.84267916755777	6.53347966822665	6.08640557140513	6.06795312850115	6.35462990467745	6.07301795395833	-0.427055614602918	0.124715466566682	0.392071138182701
Merged-chr11-52000009-4	chr11	51999891	52000091	+	981.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009458, intron 1 of 5)	intron (NM_009458, intron 1 of 5)	475.0	NM_009458	22210.0	Mm.384918	NM_009458	ENSMUSG00000020390	Ube2b	E2-14k|HR6B|Rad6b|mHR6B	ubiquitin-conjugating enzyme E2B	protein-coding	4.6336034977037	4.47790103426776	5.03742558833875	4.76287147145765	4.89767142936066	5.04262850042789	4.9487035969261	5.00219548262857	0.461241193499671	0.171429277148778	0.464685042011229
Merged-chr8-34743605-2	chr8	34743505	34743705	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64005.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	2.39732019111101	2.40905370412663	2.47280445969894	2.36420924777872	2.82682361414034	2.84713647200978	2.72702083182522	2.79495257781986	2.0693265735984	0.00192198034635166	0.0226647844719955
Merged-chr11-117987288-4	chr11	117987177	117987377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 1 of 9)	CpG	420.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	6.1770947001422	6.45420995751376	6.05472267185006	5.8991304719118	6.09657331404394	6.50022668725545	5.91148761437609	6.05039539599981	-0.000513522645105447	0.998461293826255	0.999317736028615
Merged-chr2-22933772-4	chr2	22933682	22933882	+	949.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019501, intron 9 of 10)	intron (NM_019501, intron 9 of 10)	38260.0	NM_001355467	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	4.46921828266458	4.60127416405825	5.1816498846191	5.20547452969862	5.45450726480233	5.53581158830839	5.51639378191901	5.61162526251726	1.09790679728944	0.00191947928650429	0.0226427935257025
Merged-chr13-3665548-4	chr13	3665453	3665653	+	954.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31521.0	NM_001267724	142688.0	Mm.253061	NM_178283	ENSMUSG00000033781	Asb13	2210015B19Rik|6430573K02Rik|Asb-13|C85285	ankyrin repeat and SOCS box-containing 13	protein-coding	4.82869837216512	4.74082476980505	4.79325910303908	4.90694611181226	4.57784224140581	4.85191246625606	4.87528823076961	4.63409856159334	-0.192035708503523	0.568374971451939	0.808665348796528
Merged-chr2-118601431-3	chr2	118601321	118601521	+	766.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009773, intron 2 of 22)	intron (NM_009773, intron 2 of 22)	3210.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	3.23731696944027	3.1961320296431	3.65851593279897	2.73567372508147	3.94988509093651	3.93013935891509	3.83152909823733	3.54889462061203	1.91088030285841	0.00168885303476353	0.0204801739809495
Merged-chr17-83633019-3	chr17	83632920	83633120	+	923.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1125.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	4.01566030282477	3.81233238201847	3.59185392982996	4.147946813206	3.75647204298354	3.83036482938581	4.0848370670173	3.96784168370238	-0.0273737850537264	0.953570894375424	0.983444766711298
Merged-chr6-42349120-4	chr6	42349024	42349224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011777)	promoter-TSS (NM_011777)	-704.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	6.30466778036551	6.07646631828871	6.43156645135132	6.22032009147049	6.70044052544435	6.50081211568105	6.63084062669176	6.28224619643466	0.425320331530208	0.0620011881554517	0.263394961009663
Merged-chr2-165882056-4	chr2	165881959	165882159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 1 of 11)	intron (NM_001252587, intron 1 of 11)	219.0	NM_001281926	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	6.38422441874652	6.49866726607346	6.17235990271898	6.31912766712836	6.02524884419611	5.68228192302999	5.62524624559133	5.88758614569515	-0.812213481557419	0.00116684839794849	0.0152310841954109
Merged-chr2-167129342-2	chr2	167129248	167129448	+	847.041626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008420, intron 1 of 1)	intron (NM_008420, intron 1 of 1)	59470.0	NM_008420	16500.0	Mm.205341	NM_008420	ENSMUSG00000050556	Kcnb1	Kcr1-1|Kv2.1|Shab	potassium voltage gated channel, Shab-related subfamily, member 1	protein-coding	3.23711117856197	3.124616146781	3.29533416767424	3.03037979369333	3.1028496614945	3.15881094442288	3.33685708933663	3.63724649363133	0.574142841828397	0.306570354543136	0.619026702040607
Merged-chr19-10690593-4	chr19	10690487	10690687	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	intron (NM_001361958, intron 1 of 4)	1852.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	5.94477380477046	6.19763774430619	5.62865461174114	4.91989902630253	6.18389266216829	6.26260749596932	5.80299252570421	5.47837068606749	0.348258544841724	0.342719768098596	0.6516462545027
Merged-chr3-95891979-4	chr3	95891889	95892089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346514)	promoter-TSS (NM_001346514)	16.0	NM_153513	229600.0	Mm.89556	NM_153513	ENSMUSG00000038543	BC028528	L259	cDNA sequence BC028528	protein-coding	5.07920227864351	5.12811365072536	4.93801285011923	5.35433252246138	5.03894971027763	5.3493107425302	5.05541704230277	5.04259058616097	-0.0563717119382546	0.858384729378143	0.946576014812915
Merged-chr18-62180081-4	chr18	62180014	62180214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007420)	promoter-TSS (NM_007420)	14.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	8.40137321283732	8.44984107247024	8.2009367160377	8.26272263825129	8.37179568575746	8.36616471338202	8.45806980097631	8.24903513871832	0.0414724968518214	0.789915855059742	0.918708056312353
Merged-chr4-71307662-4	chr4	71307560	71307760	+	735.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-772732.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	3.98716531447549	3.86624064104682	3.79367000688208	4.16706867631113	3.76016838608636	3.68156255763342	3.82926153343091	3.79155518092316	-0.59896676875591	0.18796895287284	0.486454410141647
Merged-chr12-73621914-4	chr12	73621812	73622012	+	788.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	37116.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	4.35145592359218	4.27813682499267	4.12140601150315	4.07106498954846	4.3456530022992	4.1413566419292	4.7234087855236	4.26208326267099	0.449862399920643	0.266309182138937	0.578066256744946
Merged-chr10-94041602-1	chr10	94041502	94041702	+	560.0	f0_c57.idr	intron (NM_053072, intron 1 of 20)	intron (NM_053072, intron 1 of 20)	5601.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	2.66002198392115	2.59771488118119	2.66025163882162	2.47050109486747	3.70359927179989	3.75396746127643	3.32396840877582	3.33748056806132	4.54154758462326	1.88307015110996e-08	9.49256730069802e-07
Merged-chr15-88146268-1	chr15	88146168	88146368	+	819.25	f0_balb.idr	Intergenic	Intergenic	-168606.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	3.37353840714274	3.09553240260516	3.42154969223779	3.5483833665401	2.55111033416363	2.79720312761348	2.83367552564021	2.91131504967733	-3.03300256586504	7.55750778487986e-05	0.00159814571188343
Merged-chr8-115706886-3	chr8	115706791	115706991	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025577)	promoter-TSS (NM_001025577)	3.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	4.64918146270516	4.19635887941969	4.8812106316267	4.72860694104639	4.7505227754047	4.9834836241893	4.7854593401255	5.45860107929478	0.776895227469107	0.0468963570522278	0.222654468958146
Merged-chr17-27857756-4	chr17	27857646	27857846	+	758.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080769, intron 1 of 20)	intron (NM_001080769, intron 1 of 20)	1239.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	3.72799882675078	3.24116199925217	3.58098755635143	3.25284689589744	3.3320379027378	3.84975114663453	3.27898585466977	3.57886297467363	0.216612092709349	0.694640564333277	0.876057703514916
Merged-chr13-59970758-1	chr13	59970658	59970858	+	580.0	f0_balb.idr	Intergenic	Intergenic	-58953.0	NR_046142	328263.0	Mm.123405	NR_046142	ENSMUSG00000114531	A530065N20Rik	A530065N20	RIKEN cDNA A530046M15 gene	ncRNA	2.80139120913845	2.9499678908423	2.97558140263945	2.92805103113537	2.38667279446677	2.84558585164375	2.52101024138497	2.67024888073945	-1.58190215405395	0.0288449708419559	0.163169918168055
Merged-chr5-136217380-5	chr5	136217222	136217422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302938)	TTS (NM_001302938)	-18368.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	6.08988637898006	5.76369804778837	6.16630352964118	5.40191974486033	5.91249180159957	5.85879523415758	5.59827608833868	6.10584110764107	0.016863369284903	0.955099892873403	0.984006705576019
Merged-chr1-171617092-4	chr1	171616988	171617188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9678.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	7.84280241112107	7.9484495065294	7.76139161350698	7.68338755743581	7.64435556391539	7.68074770853223	7.50378600841813	7.47880995131676	-0.298032523956543	0.0835805815035969	0.314305907166342
Merged-chr10-118609295-4	chr10	118609177	118609377	+	830.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52752.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	3.9761423163231	3.93073572811812	3.67318309501819	4.16754625417168	3.77738568426558	3.73177322654409	3.81819849222425	3.67127359254595	-0.609628746838083	0.189152309988172	0.488061780346845
Merged-chr19-56530415-2	chr19	56530327	56530527	+	977.916626	f0_balb.idr|f1_balb.idr	intron (NR_153440, intron 9 of 9)	intron (NR_153440, intron 9 of 9)	17695.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	3.76678469756955	3.94358993499485	3.81143080891017	4.08940930102885	2.73894204927611	2.95182627002573	2.91272067393878	2.91914253941186	-6.75297087417539	7.7099712598159e-10	5.05329690886221e-08
Merged-chr1-59482856-4	chr1	59482760	59482960	+	901.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008057, exon 1 of 1)	5' UTR (NM_008057, exon 1 of 1)	713.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	3.97275185542724	3.92108686848323	4.46843556681358	4.29029896045638	4.34827274368438	4.56028260600422	4.01052414905913	4.17347818562258	0.250971371687355	0.563687059731047	0.806436603504976
Merged-chr2-160431024-2	chr2	160430924	160431124	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-63959.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	2.81707754954114	2.61351510838109	3.29546251329566	2.92545724051024	3.28347801987774	3.06425403300819	3.1235198047845	3.13431107729448	0.886946099688806	0.172150404597023	0.465416805257196
Merged-chr9-20652596-1	chr9	20652496	20652696	+	771.0	f0_balb.idr	intron (NM_023371, intron 1 of 3)	intron (NM_023371, intron 1 of 3)	466.0	NM_023371	23988.0	Mm.7906	NM_023371	ENSMUSG00000032171	Pin1	0610025L01Rik|D9Bwg1161e	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	protein-coding	3.26166597363009	3.47258965299659	3.65969588039303	3.58674731076304	3.48822506412626	3.67413337732878	3.49035595385821	3.55597989724056	0.137839899870957	0.783076693532259	0.915488732161696
Merged-chr19-34206700-1	chr19	34206600	34206800	+	868.0	f0_balb.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	-10808.0	NM_001360719	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	3.54565653810244	3.3710586501151	3.83965556914867	3.82975365661749	3.80580621081057	3.41779993332342	3.41900769699051	3.42942015141149	-0.401889668290457	0.450479366671714	0.735338736614162
Merged-chr6-85374808-4	chr6	85374720	85374920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177466)	promoter-TSS (NM_177466)	-186.0	NM_001003955	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	7.67828499328367	7.6321716539585	7.59320598859906	7.42285175276871	7.70551994804462	7.95325837222101	8.09709976884364	7.68265208797837	0.379334064826529	0.0394919950604651	0.200165115022177
Merged-chr11-31808120-4	chr11	31808054	31808254	+	935.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102312, intron 1 of 4)	intron (NR_102312, intron 1 of 4)	16393.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	4.96107348410342	4.52958797097542	4.34440481469692	4.63631267849876	4.65163848270747	4.56565034018456	3.89253056401922	4.38758006628909	-0.501441457633984	0.244925845921657	0.556041743592563
Merged-chr2-91527088-2	chr2	91526988	91527188	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165989, intron 1 of 43)	CpG	326.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	4.03002489956778	4.44657697161807	4.24157271326734	4.20228686167177	4.47157876541665	4.63768892351638	4.27059366019583	4.93530034458196	0.824697672761189	0.0399752647694389	0.201715537432574
Merged-chr10-84935766-4	chr10	84935685	84935885	+	960.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013441, intron 2 of 8)	intron (NM_001013441, intron 2 of 8)	18172.0	NM_183172	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	4.83356293182588	5.00563259623258	4.67366454443254	5.14953885549757	4.91434761689013	4.71920051837556	5.24942390443706	4.83116413209888	0.00121142997968733	0.997221559758556	0.998908860902246
Merged-chr16-50760137-4	chr16	50760026	50760226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23283.0	NR_131006	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	6.33890597068704	6.27947388304073	6.90167961422398	6.90400403955986	6.34959186458327	5.88472209193411	6.61811601328889	6.23872697077507	-0.506027370772398	0.0676408948661476	0.277613797774902
Merged-chr17-26438100-4	chr17	26437999	26438199	+	822.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081656, intron 2 of 4)	intron (NM_001081656, intron 2 of 4)	23134.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	4.30361113903531	4.21439087198273	3.90781930801543	4.31810591744006	4.75077908180857	5.20371145585227	4.73375545058317	4.6827171602411	1.42562117664991	0.000320973830556783	0.00535801976669823
Merged-chr12-51691190-5	chr12	51691135	51691335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021710, exon 1 of 6)	5' UTR (NM_021710, exon 1 of 6)	269.0	NM_001329698	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	5.88040508111646	5.58622448353334	5.85797872295872	5.82299694581824	6.01326096883404	6.18695514625921	5.75596849298641	6.28689030519876	0.450930076824518	0.0806534095887451	0.308052860791866
Merged-chr7-120934810-3	chr7	120934706	120934906	+	810.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025298, exon 13 of 21)	exon (NM_025298, exon 13 of 21)	17062.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	3.49405340231393	3.79804395939536	3.77422431155393	4.030617006914	3.84942584426478	3.72993674566961	3.70809558029156	3.66744364439081	-0.176276678802588	0.714846212613568	0.886003030420421
Merged-chr11-95292176-4	chr11	95292075	95292275	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195003, intron 5 of 14)	intron (NM_001195003, intron 5 of 14)	18071.0	NM_001195004	217127.0	Mm.90213	NM_177619	ENSMUSG00000038909	Kat7	Hbo1|Hboa|Myst2	K(lysine) acetyltransferase 7	protein-coding	5.01117533448586	5.55812826232654	5.15376821357686	5.51263050777153	5.10312678098395	5.48462955179135	5.09494771635624	5.27777066392266	-0.185721454474325	0.560005784909504	0.804176966000292
Merged-chr12-24758520-4	chr12	24758400	24758600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50246.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	7.56670147601395	7.41269132333947	7.82915079672038	7.97818801689226	6.89908094876852	6.66720513904104	7.50477493177368	6.88951682702789	-0.925453363721418	0.000145991919762794	0.00279042933855958
Merged-chr8-84840011-2	chr8	84839911	84840111	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001297606, intron 1 of 8)	MIRb|SINE|MIR	654.0	NM_001297607	19358.0	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	3.85154535516139	3.56083104279781	3.63796897666529	3.51618433877202	4.21024740587127	3.63425438899065	3.88345920513717	4.07499519522223	0.980344056633266	0.0373835529024036	0.192960399712849
Merged-chr4-57956459-4	chr4	57956356	57956556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011660)	promoter-TSS (NM_011660)	-45.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	8.81357462100689	9.16028687314338	9.07645849524452	8.92874656476537	9.02325792107569	9.04105431669982	9.18616846830949	8.77197950877522	0.0164026572646239	0.919883873317444	0.970406583631903
Merged-chr13-107101157-4	chr13	107101054	107101254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	78584.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	6.12955298710253	5.72437248097094	5.55203487968422	6.02160523597553	6.15489925572926	6.20453730644139	6.04012463460528	5.89328518123695	0.305772935036777	0.244518427206741	0.555737184052257
Merged-chr6-97511064-2	chr6	97510973	97511173	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-23253.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.34800282866183	3.60291167497101	4.01838217885827	3.34626673915719	3.87744193230438	3.53032366121913	3.63342002271134	3.84445895748247	0.402806730357676	0.444057966849407	0.730473816093689
Merged-chr13-21716337-4	chr13	21716222	21716422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178182)	promoter-TSS (NM_178182)	-90.0	NM_178182	319191.0	Mm.14767	NM_178182	ENSMUSG00000071516	Hist1h2ai	H2a-291A	histone cluster 1, H2ai	protein-coding	6.60276514537068	7.19265840685261	6.30367933977148	6.54519365907056	6.93440991019459	7.42115105105676	6.90453322138699	7.11359355717348	0.557769463096165	0.0314489378905786	0.172777396581776
Merged-chr7-126721821-4	chr7	126721660	126721860	+	979.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-16944.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	4.26177342798644	4.25580300080483	4.74004369733992	4.45196780440503	4.33949580221995	4.34066703482661	4.54091157898973	4.55938662030635	0.012726970012894	0.973603748536707	0.990570637473211
Merged-chr1-36052818-4	chr1	36052718	36052918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-15582.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	7.71436193972939	7.80375113515564	7.90484967741551	8.04669207093206	7.81551345683003	7.43535062328516	7.7797154133549	7.63464542855679	-0.260673502336031	0.152641838125301	0.436972868240058
Merged-chr7-145098589-4	chr7	145098467	145098667	+	983.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109552.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	5.23258762362164	5.49083961128603	5.00164128994145	5.11605411076571	5.21715698314095	5.34407960102114	5.11401367901939	4.88614550386756	-0.130415460252192	0.681589684799645	0.869504483732776
Merged-chr12-102340540-4	chr12	102340405	102340605	+	830.5059809999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 3 of 9)	intron (NM_177620, intron 3 of 9)	56864.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	4.10263224358537	4.20134992966795	4.14908604955841	4.28689373494535	3.84699907562418	3.96705987682532	4.03854657329775	4.23338766717483	-0.450484005718444	0.281430730820036	0.593539495971536
Merged-chr11-117110696-4	chr11	117110640	117110840	+	923.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4432.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	4.20579705379904	4.38987803303767	4.00585397141736	3.60713314055367	5.10176441043975	4.23891516829225	3.93443279103429	4.05645468048926	0.819456254578536	0.118015787066198	0.380050025226662
Merged-chr5-80955530-3	chr5	80955430	80955630	+	798.700012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65041.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	4.07900946612965	3.82201311062627	3.86344070251926	3.58181638962765	4.3501530913638	4.59777945430887	4.5486567830254	4.30518725373175	1.60876179213732	0.000119921952551299	0.00235799023774831
Merged-chr16-95781879-3	chr16	95781783	95781983	+	716.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79476.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	3.68884744287956	3.7164151256165	3.52733947730853	3.86728077955344	3.33537783460129	3.58352893913617	3.67414464185612	3.68724423430296	-0.458352600568584	0.355688989112376	0.662399899427797
Merged-chr4-116877335-4	chr4	116877310	116877510	+	954.642822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029912)	promoter-TSS (NM_001029912)	8.0	NM_001029912	74464.0	Mm.218946	NM_001029912	ENSMUSG00000033948	Zswim5	4933426E21Rik|AI503093|mKIAA1511	zinc finger SWIM-type containing 5	protein-coding	4.30617618000755	4.08400717498286	4.45654762690967	4.12339898032536	3.77074990611251	4.11654308455369	3.9245246507349	3.88442091694192	-0.857588058616296	0.0485096715769291	0.227327007253554
Merged-chr12-34449546-4	chr12	34449432	34449632	+	943.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 4 of 27)	intron (NM_001271386, intron 4 of 27)	79357.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	5.03488553537713	4.80714752913871	5.21538043125357	5.38990626443207	4.9900634529668	4.39920220022646	4.80326363966873	4.61799932156281	-0.808427743322419	0.0286384434970498	0.162504445924466
Merged-chr3-96098777-4	chr3	96098660	96098860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5767.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	6.16200487901115	6.20945937735497	5.66520528431091	5.88558927124793	6.23538272636947	6.00633606954084	6.31270308686028	6.34071796375187	0.366327182927011	0.146101730577779	0.426051635014622
Merged-chr2-119189107-1	chr2	119189007	119189207	+	592.0	f1_balb.idr	intron (NM_139139, intron 1 of 10)	B3|SINE|B2	14598.0	NM_001039223	623781.0	Mm.389344	NM_001039223	ENSMUSG00000055926	Gm14137	-	predicted gene 14137	protein-coding	3.44795437162805	3.10632195741765	3.39069875654552	3.26251932587192	3.37584495246362	3.62139522208071	3.54169631320634	3.83270048426274	0.993030247291727	0.0564194310219183	0.248722821795437
Merged-chr1-67360991-3	chr1	67360883	67361083	+	888.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	237956.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	4.69489181223122	4.91328067108332	4.76806627887657	5.19940007211106	4.68746440037346	4.09469752901293	4.18581677112116	4.253708513795	-1.26387828371712	0.00237022003241118	0.026627192501104
Merged-chr19-47732161-3	chr19	47732061	47732261	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026377, intron 1 of 3)	G-rich|Low_complexity|Low_complexity	405.0	NM_026377	67788.0	Mm.181610	NM_026377	ENSMUSG00000025066	Sfr1	6330577E15Rik|Meir5	SWI5 dependent recombination repair 1	protein-coding	4.8313521332876	4.79508569491239	4.7234699044563	4.73833921732911	4.81541635581563	4.65041324385185	4.62410580757574	4.55956530891676	-0.202645300852628	0.549413157397838	0.798014062451194
Merged-chr4-89311042-4	chr4	89310940	89311140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007670)	promoter-TSS (NM_007670)	-8.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	7.26911856447356	7.64916757961161	7.63475534086988	7.64502164341741	7.50829323212531	7.28212077622382	7.51150435434358	7.5611678163112	-0.122440331836223	0.510090619067877	0.774513270041275
Merged-chr7-44528151-4	chr7	44528049	44528249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019866, exon 6 of 6)	exon (NM_019866, exon 6 of 6)	-3480.0	NM_146189	233199.0	Mm.358888	NM_146189	ENSMUSG00000038670	Mybpc2	-	myosin binding protein C, fast-type	protein-coding	6.21950746261603	6.05410531188362	5.77169387512704	6.40030769741517	5.61462257160719	5.63464845900741	5.9747016617109	5.9796398646791	-0.536933422417281	0.0504636667765258	0.233062116369474
Merged-chr9-64936689-4	chr9	64936593	64936793	+	820.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144813, intron 3 of 9)	intron (NM_144813, intron 3 of 9)	14914.0	NM_144813	214111.0	Mm.156124	NM_144813	ENSMUSG00000034452	Slc24a1	-	solute carrier family 24 (sodium/potassium/calcium exchanger), member 1	protein-coding	3.75803456338501	3.27374451533068	3.18850696100277	3.2740125592262	3.77297797719344	3.43895411032641	3.82951904455646	3.66060985397905	0.969048697470933	0.0666610448959254	0.275240241002789
Merged-chr14-73142035-4	chr14	73141936	73142136	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170694)	promoter-TSS (NM_001170694)	-474.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	4.50171931689316	4.43786682776268	4.92973701104137	5.06977447948165	4.82504045988578	4.92580636400386	4.80354457787976	4.67165824041457	0.0570453426551736	0.878165765160906	0.954435891930008
Merged-chr13-37827864-4	chr13	37827753	37827953	+	953.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	CpG	460.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.78281931045544	4.39318950746695	5.01425737427333	4.81184668364482	4.44385759819328	4.80511581948551	4.23782283384519	5.04043596770476	-0.217883770135693	0.590261537237621	0.820872690719269
Merged-chr2-167635136-2	chr2	167635036	167635236	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3131.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	2.82122660344776	2.98496036173993	2.68603397389721	2.68002454057364	2.93040554317003	2.92885936682265	2.87409063397555	3.00000023785582	0.627231472967748	0.303892377583709	0.61661218768617
Merged-chr19-22304526-3	chr19	22304415	22304615	+	877.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035239, intron 1 of 24)	intron (NM_001035239, intron 1 of 24)	-143693.0	NM_177341	226025.0	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	3.70917560555275	3.73592932136845	3.65811127474741	4.0032508643345	3.58023352227519	3.72080821597848	3.41689836653306	3.48795711930733	-0.755829457569775	0.125139587710641	0.392669313774279
Merged-chr13-47152557-4	chr13	47152463	47152663	+	836.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 1 of 7)	intron (NM_146042, intron 1 of 7)	-3893.0	NR_126083	319467.0	Mm.447279	NR_126083	ENSMUSG00000114961	A930002C04Rik	-	RIKEN cDNA A930002C04 gene	ncRNA	3.93907211935827	4.06861777487154	3.77880316313456	4.03168540885077	4.000937401135	3.83978227909488	4.26973474380851	4.08016412000476	0.24203594698586	0.575751282673606	0.813185666420437
Merged-chr3-101836726-4	chr3	101836622	101836822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172295)	promoter-TSS (NM_172295)	-499.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	6.05063767627448	6.14151419618536	5.9678166163739	5.8239533201252	6.07551802917455	5.90666236592603	5.50467134458822	5.85024972700677	-0.211843266234955	0.424255069300429	0.716085736115701
Merged-chr9-63384894-4	chr9	63384782	63384982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7030.0	NM_011840	23938.0	Mm.325746	NM_011840	ENSMUSG00000058444	Map2k5	AI324775|AI428457|MEK5|Mapkk5|Prkmk5	mitogen-activated protein kinase kinase 5	protein-coding	6.61453183810538	6.87329831484981	6.20632573156245	6.62403507321343	6.52010341864277	6.48455026975752	6.2750346792156	6.48321722182718	-0.233819473136334	0.318815863872796	0.630681561032378
Merged-chr11-90238816-4	chr11	90238707	90238907	+	976.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10669.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	5.31137270162049	5.55265196144062	5.56184089066033	4.67740414295775	5.47705961722108	5.75940375168097	5.5081443917712	4.87691551420323	0.227535661369933	0.542428972079265	0.793833794123973
Merged-chr9-115314776-3	chr9	115314674	115314874	+	925.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-4353.0	NM_024222	68292.0	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	3.06412275297685	2.97528967992516	3.06444770500009	2.57438071502276	4.39436332825459	4.34892754260605	4.33518259689915	4.3206628518295	5.99899177605638	1.2947365379593e-16	2.67124788508419e-14
Merged-chr7-80340285-4	chr7	80340185	80340385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133952)	promoter-TSS (NM_133952)	-66.0	NM_133952	101869.0	Mm.243024	NM_133952	ENSMUSG00000030533	Unc45a	AW538196	unc-45 myosin chaperone A	protein-coding	7.3942245735697	7.5204307542352	7.32331889615658	7.4607830523925	7.66891324339965	7.54212652139312	7.47358793076754	7.61919469616819	0.200615903121898	0.243197721264194	0.554186534827252
Merged-chr17-32269365-2	chr17	32269265	32269465	+	887.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286630, intron 1 of 19)	B3|SINE|B2	14758.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	2.81479992048555	3.0839760923015	2.94250303665255	2.84308894661026	2.88750070653299	2.98726680673582	2.99061444526757	2.94104624855165	0.120907546661569	0.838247619239828	0.938633191613918
Merged-chr15-98683936-4	chr15	98683838	98684038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6477.0	NM_172612	223881.0	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	5.59336927277347	5.40270356505859	5.05291399020127	5.19987342368699	5.67060768468177	5.84332483333268	5.75702106088738	5.71389447470221	0.729374582716482	0.00895518233287152	0.0729147704497211
Merged-chr6-112752157-4	chr6	112752049	112752249	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 12 of 21)	intron (NM_080448, intron 12 of 21)	-55479.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	5.66687424230348	5.66252239148931	5.31074223139664	5.70897501119089	5.42434686861806	5.38964456962843	5.04309409173068	5.564419523178	-0.407601315286741	0.164896668860842	0.455194104822412
Merged-chr12-91012717-4	chr12	91012613	91012813	+	980.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181815, intron 24 of 25)	intron (NM_181815, intron 24 of 25)	-33135.0	NR_045858	71349.0	Mm.442093	NR_045858	ENSMUSG00000085004	5430427M07Rik	-	RIKEN cDNA 5430427M07 gene	ncRNA	5.1988444694598	4.84742330651293	5.14012288605485	5.22626147360934	5.11920106653416	4.70765194253734	5.14458127343536	4.52215813109903	-0.396120187106522	0.261800660893599	0.573733703910914
Merged-chr6-114659697-4	chr6	114659599	114659799	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 2 of 19)	intron (NM_001253718, intron 2 of 19)	16602.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	4.79663185442944	4.93529577961115	4.93671764170764	5.01830741887234	4.46767574731472	4.54594061471011	4.77464634560485	4.79423523585632	-0.597318091118694	0.0797500820963934	0.305781679246886
Merged-chr6-124360757-4	chr6	124360647	124360847	+	959.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3661.0	NM_001177502	76921.0	Mm.425335	NM_001177502	ENSMUSG00000079346	1700013D24Rik	-	RIKEN cDNA 1700013D24 gene	protein-coding	5.25570520708987	4.98630983134429	4.55193189738806	4.94826578982646	5.38306086345474	5.0347240352125	5.36414320534167	4.81492833122699	0.418901419621789	0.232869680399289	0.542464407511367
Merged-chr6-142752717-4	chr6	142752635	142752835	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3951.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	5.43530212729536	5.33275065801314	5.18668695217084	6.06133573670789	5.58025204793367	5.14404969080803	5.56728361119549	5.03781105896976	-0.3641363309109	0.305402600388479	0.617813594931132
Merged-chr9-70503826-4	chr9	70503719	70503919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033604)	promoter-TSS (NM_033604)	-44.0	NM_033604	93836.0	Mm.29783	NM_033604	ENSMUSG00000032217	Rnf111	ARK|Arkadia	ring finger 111	protein-coding	7.00636056875159	7.03779357687713	7.38801857441532	6.99535954316132	7.49765557190198	7.24873506592437	7.46165815214814	7.35361538907215	0.391618423746881	0.0428861894207955	0.210654618506853
Merged-chr6-135377982-3	chr6	135377878	135378078	+	882.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001288627, intron 2 of 4)	intron (NM_001288627, intron 2 of 4)	10485.0	NM_001288627	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	3.51701892396156	3.70627436909944	3.77605386885316	3.59516430152317	3.55210187967977	3.68957554031985	3.61286274503477	3.51565450672802	-0.182942992346304	0.700855117808623	0.879374176246616
Merged-chr3-144698589-3	chr3	144698482	144698682	+	962.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019464, intron 5 of 8)	intron (NM_019464, intron 5 of 8)	21753.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	4.45088871574755	4.18816600027118	4.28388480490766	4.37072692756891	4.34121357830151	4.10633998831024	4.35070713626445	4.44871229958617	-0.0196461679256248	0.959403759445118	0.985513818852278
Merged-chr15-3995925-4	chr15	3995822	3996022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145930)	promoter-TSS (NM_145930)	-117.0	NR_045740	328489.0	Mm.447020	NR_045740	ENSMUSG00000097662	Gm2093	100039196|A630020A06	predicted gene 2093	ncRNA	9.26629875914542	9.44080561084018	9.51054921914745	9.30982102509718	9.58365669606389	9.78093332648958	9.69606511910649	9.3699860241038	0.284061231266327	0.0653572048579284	0.272184877929371
Merged-chr13-37844072-4	chr13	37843987	37844187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	16694.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.96930119937782	6.21312575517884	5.90136911847931	5.98212419410357	6.26174954464075	6.02983888726043	5.87140107035006	6.05251611089957	0.0761862473386285	0.756149024103842	0.904159100355911
Merged-chr6-124901256-4	chr6	124901148	124901348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	10457.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	8.43916986384283	8.61379176328023	8.3612604973602	8.35398679756075	8.55111827084727	8.58180691631962	8.40139908177237	8.48032558755173	0.0774918596424386	0.615473679462264	0.834477192020031
Merged-chr5-117089380-3	chr5	117089301	117089501	+	900.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26592.0	NM_001122666	71954.0	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	3.65286477175847	3.6510863036971	3.59975256968831	3.88722758689087	3.65954344121489	3.59992806246256	3.78543301664216	3.42263835103411	-0.27712223328631	0.569637813366069	0.809451796082798
Merged-chr1-79858545-4	chr1	79858431	79858631	+	826.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009255, exon 1 of 9)	5' UTR (NM_009255, exon 1 of 9)	134.0	NM_009255	20720.0	Mm.3093	NM_009255	ENSMUSG00000026249	Serpine2	B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4	serine (or cysteine) peptidase inhibitor, clade E, member 2	protein-coding	3.83857007852602	3.69002163966449	3.93290909665126	3.83919006293577	3.70944250993171	3.55925925454294	3.77391881861127	3.88453277630421	-0.266100753668293	0.561278404165397	0.804900484135968
Merged-chr5-124478989-4	chr5	124478852	124479052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030259)	promoter-TSS (NM_030259)	-717.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	4.93423756723741	5.45336904290176	5.04108370507079	4.59577682391172	5.03735448159023	5.11100255969678	4.91138731564045	5.2832128864033	0.110234030327921	0.759000194024446	0.905454946040727
Merged-chr10-36888358-3	chr10	36888231	36888431	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86213.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	3.18777562608415	3.18622938276648	3.35702624459026	3.55940113734515	3.27367932816898	3.17044085517505	2.98581042036895	3.30140328297851	-0.562843643977553	0.325984326249475	0.63752464702773
Merged-chr7-141269068-4	chr7	141268998	141269198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028069)	TTS (NM_028069)	-2674.0	NM_001252600	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	7.10925297979219	6.66263950842737	7.00284938039493	7.05590589486076	6.86715149656398	7.00628276341543	7.31297960537446	7.03480535156072	0.125462311917495	0.555391717332407	0.801534192306725
Merged-chr9-123818827-2	chr9	123818727	123818927	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 14 of 17)	intron (NM_001110253, intron 14 of 17)	12350.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	3.31061293903105	3.03701996196606	3.31110188383007	3.01246722931346	2.94807997800869	3.0663233533219	3.07497357311224	3.20170127342793	-0.378921868675511	0.512975719984473	0.776079955542303
Merged-chr17-67263056-4	chr17	67262959	67263159	+	976.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	91400.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	4.72597263334508	4.80455150755672	4.8098371899765	4.86430257503824	5.33987648930614	5.06438749014125	5.10392884528803	5.5019348897598	0.881394993743836	0.00516376234518152	0.0486567280800911
Merged-chr10-60261161-2	chr10	60261061	60261261	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16467.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	4.80299951226911	4.44122011719084	4.98678627477323	4.72324399134306	5.18350658045642	4.98071122241919	4.89289275517991	5.50488672758245	0.817217378049668	0.0188654229217892	0.123025372253782
Merged-chr17-32788355-4	chr17	32788274	32788474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346705)	promoter-TSS (NM_001346705)	-87.0	NM_172458	208292.0	Mm.38813	NM_172458	ENSMUSG00000024298	Zfp871	4732483N19|9030612M13Rik|AI118577|AI265322|mKIAA3006	zinc finger protein 871	protein-coding	6.4654884108477	6.65468050053156	6.55221628406958	6.5347327954114	6.60586480120794	7.03429174619986	6.62904899024341	6.77392601557882	0.301731873874516	0.157956936837803	0.444802482717813
Merged-chr14-122292663-3	chr14	122292579	122292779	+	935.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	-59041.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	4.16410279718536	4.09258139979248	3.84023153821424	4.14716259738486	3.71412115347678	3.52460654858405	3.87584237470258	4.07765135840389	-0.724310582762848	0.120148999496167	0.383759732337342
Merged-chr4-63686288-4	chr4	63686172	63686372	+	674.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51851.0	NR_151544	102632940.0	Mm.399154	NR_151544	ENSMUSG00000086817	Gm11482	-	predicted gene 11482	ncRNA	3.43443358021926	3.44994204532365	3.31934626376398	3.55588327643146	3.30242353381401	3.16255890747281	3.66833460576593	3.53885670033185	-0.0591236376130468	0.911702674915362	0.967021434294281
Merged-chr14-31193979-4	chr14	31193811	31194011	+	968.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 3 of 13)	intron (NM_001347583, intron 3 of 13)	12915.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	2.93825347836051	2.94406655672421	2.8093817194547	2.74892552146425	2.91689382298412	3.10877387140307	2.98734054031198	2.99715046999912	0.633468478949205	0.281482758862859	0.59356128849354
Merged-chr11-114818470-4	chr11	114818378	114818578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19554.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	7.37391466323647	7.38992907686715	7.13075764346924	7.44354657693904	6.94758013337813	7.11876511702933	7.04728043059329	7.16045641184255	-0.383444261671373	0.0410329396653047	0.2048883628507
Merged-chr9-118674502-4	chr9	118674455	118674655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	intron (NM_133721, intron 11 of 27)	-37137.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.86491706983553	7.84520171871157	8.23488774768813	7.75726745889289	8.42350187201939	8.32251280650474	8.71438057510845	8.46654220790566	0.71166132071817	9.92336744730538e-05	0.00201752462591188
Merged-chr11-53769937-4	chr11	53769834	53770034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159396)	promoter-TSS (NM_001159396)	-80.0	NM_001159393	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	8.51162750273756	8.79366180382106	8.25632682153171	7.92520283391451	8.50367753313449	8.58219146737409	8.07633824891171	7.9719403496948	-0.122316193260923	0.600806156956521	0.826967246454786
Merged-chr4-102509899-2	chr4	102509799	102509999	+	775.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-60161.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	3.38821369707327	3.01932077938081	3.06719829651948	3.03038274804445	3.16201157942645	2.97764042764312	2.99483827626865	3.12513247467434	-0.231520137286464	0.690711304491125	0.874049428217715
Merged-chr15-76795018-4	chr15	76794929	76795129	+	909.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	23141.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	4.77359605501186	4.46446183679443	4.77440431783285	4.78011147330379	4.36969201991589	4.27065081116757	4.1791866237648	4.34132276758881	-0.943524134917302	0.0121405797663324	0.0906867800595837
Merged-chr13-100833480-4	chr13	100833388	100833588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022885)	promoter-TSS (NM_022885)	-61.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	8.32068844598284	8.36812163767386	8.22995837613687	8.34814032521955	8.45468862751643	8.64632583528459	8.47270142477769	8.1056473800533	0.145142903156139	0.394220576213874	0.693379056693329
Merged-chr2-72788957-3	chr2	72788855	72789055	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102348, intron 2 of 5)	intron (NR_102348, intron 2 of 5)	24762.0	NR_102348	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	3.75186257158385	3.48382989708183	3.68319237987605	3.18452771875042	5.1356739002991	4.29958421048076	5.0015822453311	5.07657502615021	3.67166287303822	1.95172439688383e-15	3.38833636209254e-13
Merged-chr9-124015548-3	chr9	124015397	124015597	+	912.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-6474.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	3.23539712563785	3.11977801841724	3.44043305982455	3.47282235010818	3.01710453593566	2.79964369547331	3.16718924050494	3.05595532497416	-1.25367836743003	0.0397695567381286	0.201047318639574
Merged-chr3-96301333-3	chr3	96301228	96301428	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7359.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	5.41568295667345	5.53693941171769	5.41661262101215	5.51711605214431	5.82113774848544	5.56344906559583	5.71271439823503	6.1421684357892	0.587359333899139	0.0316182644200377	0.17338647481925
Merged-chr13-117127572-3	chr13	117127470	117127670	+	869.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2455.0	NR_046023	623312.0	Mm.131279	NR_046023	ENSMUSG00000114792	Gm6416	-	predicted gene 6416	ncRNA	3.60700785865525	3.77560280847848	3.37179246076019	3.91972420579119	3.63940281379449	3.72305314520766	3.6463115707416	3.65877185560243	-0.108320868333938	0.828000445378169	0.934007956519098
Merged-chr9-107888089-4	chr9	107888003	107888203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028369)	promoter-TSS (NM_028369)	-26.0	NM_028369	72825.0	Mm.38037	NM_028369	ENSMUSG00000032583	Mon1a	2810468K17Rik	MON1 homolog A, secretory traffciking associated	protein-coding	6.99321013867804	6.72381664735662	6.98221590022834	7.16960061917009	6.68130268935826	6.68921553584777	6.70481055805233	6.87506274483574	-0.349138814194932	0.0932731698580673	0.334059120324412
Merged-chr10-25289739-3	chr10	25289676	25289876	+	832.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 1 of 7)	intron (NM_018747, intron 1 of 7)	9387.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	3.25457933711091	2.98641140488298	3.14887990092062	3.29686898797495	2.93739813769335	2.87020562616338	3.08069927308664	2.83600880556607	-1.04123308412093	0.0859850792402968	0.319577250946843
Merged-chr1-36436794-4	chr1	36436696	36436896	+	992.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310517, intron 4 of 8)	L1MB7|LINE|L1	8475.0	NM_001013374	214895.0	Mm.287854	NM_001013374	ENSMUSG00000001143	Lman2l	A630028F14Rik|VIP36-like|VIPL	lectin, mannose-binding 2-like	protein-coding	5.65870728415486	5.41556243924529	6.68123561347445	6.36590723803322	5.12999619470703	5.5432477575603	5.60387489579173	5.57300174435852	-1.07797894819217	0.00270182888281185	0.0294372383360883
Merged-chr12-4208924-4	chr12	4208809	4209009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 16 of 21)	intron (NM_001159537, intron 16 of 21)	25056.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	6.8714742741246	6.95500504873424	6.51910660961891	6.62383644945946	6.695665498414	6.96892004339302	6.37986196491902	6.25084206682453	-0.210401444752835	0.395346954263284	0.694224450357239
Merged-chr7-28528053-5	chr7	28527863	28528063	+	982.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5127.0	NM_177396	338374.0	Mm.246799	NM_177396	ENSMUSG00000060747	Ifnl3	IFL-1|IL-28B|INF-alpha|INF-lambda|Il28|Il28b	interferon lambda 3	protein-coding	3.8999575316594	3.85702015257587	3.85446082675718	3.84265045565962	3.65150219154324	3.59032211547554	3.39971098618595	3.75472723689051	-0.781697923328647	0.0989757236351525	0.344920099516598
Merged-chr19-28009985-3	chr19	28009907	28010107	+	663.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360357)	promoter-TSS (NM_001360357)	-234.0	NM_001360357	19726.0	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	2.99541460007482	2.99957855748326	3.21763516183181	3.1143948280466	2.9374203187067	2.97504246131203	2.92409620524879	2.8673585524309	-0.683447079406771	0.246922152158706	0.558168726560377
Merged-chr4-128993167-4	chr4	128993052	128993252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033966)	promoter-TSS (NM_001033966)	-72.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	8.2380752350073	8.17579117870839	8.08744713047711	8.0939935276174	8.2473708343498	8.32810601030027	7.86896785325216	8.13272783003778	0.0108963468703431	0.948931584096305	0.981672861338433
Merged-chr15-77832789-4	chr15	77832694	77832894	+	960.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	9381.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	5.109674758982	5.33004792808275	4.76820216469032	4.67440284110837	4.68386779472985	4.82295669439889	4.53516842487572	5.04561129936591	-0.41959103323949	0.258885192109637	0.570660217682073
Merged-chr4-141147914-4	chr4	141147799	141147999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172518)	promoter-TSS (NM_172518)	-23.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	6.21970612774357	6.65024025506785	5.89092124098264	5.97524735348732	6.8102347731836	6.78744512268823	6.79962083693157	6.82963248149522	0.863325962915156	0.000487795277670431	0.00758095634700953
Merged-chr13-94296123-4	chr13	94296019	94296219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10288.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	5.77417843962919	6.00215927506305	5.94006923480114	6.20352248432641	5.68760299230821	5.54564441812795	5.90974839640487	6.13903151386093	-0.264877962585054	0.330507482233973	0.641871774561785
Merged-chr19-44363605-4	chr19	44363516	44363716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30290.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	6.73631537536007	7.38558846582653	7.15006696829612	6.81903558585715	7.19356168555997	7.42467245670986	7.15853957501524	6.97531813077227	0.206994288964063	0.362183059529403	0.667404354318051
Merged-chr16-58476546-4	chr16	58476468	58476668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	46858.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	7.29175531727511	7.09628515054861	7.45672856821199	7.13158056119853	7.17613229933447	7.30523274742026	7.04481986188938	7.03836504440016	-0.133524314191503	0.49199436279891	0.763292011816059
Merged-chr8-56285055-4	chr8	56284959	56285159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-9493.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	6.10508517242414	5.85398377727397	6.63107748138325	6.92659420623818	5.6101071532367	6.17461010667727	5.94275580114922	6.10177729660468	-0.749783355538018	0.0177044833816276	0.117853669893746
Merged-chr2-90479337-1	chr2	90479237	90479437	+	843.0	f1_balb.idr	promoter-TSS (NM_001135657)	promoter-TSS (NM_001135657)	-163.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.18986658142108	2.81913742304343	2.97510801366811	2.83827497397584	2.82625768918962	2.74833059509995	2.84259417074919	2.97352472237197	-0.478282092527713	0.443307322217688	0.729879993711436
Merged-chr11-78791682-4	chr11	78791580	78791780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34915.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	5.76528477444709	5.51447805704026	5.21790213800885	5.3210925336765	5.49604255422263	5.69537588124681	5.35204633300594	5.51772651627623	0.0976241440472321	0.73681597529766	0.896086114515881
Merged-chr13-52602995-4	chr13	52602875	52603075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	6093.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	7.28974510183998	7.54148367378685	8.15782184805528	8.02145338317773	7.1407794820653	7.215543170463	7.51074162340467	7.15913724846493	-0.716763791946553	0.00247978204651236	0.027601001765239
Merged-chr6-24665081-4	chr6	24664986	24665186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167745)	promoter-TSS (NM_001167745)	-91.0	NM_028459	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	8.70820425237055	8.53238180704273	8.73046647673136	8.66311769324925	8.62125976589357	8.53961091728504	8.81281381352707	8.23368274524182	-0.112753318238312	0.513726269253627	0.776626777135012
Merged-chr15-57706272-4	chr15	57706141	57706341	+	993.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	11574.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	5.29891825461705	5.02871327495449	4.95045212619713	5.32779365325681	4.9664340206862	5.19543149139913	4.99734255628376	4.83268345310406	-0.329829558538144	0.302094601449268	0.614383029131046
Merged-chr11-55039797-4	chr11	55039709	55039909	+	956.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6338.0	NM_013472	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	5.41336573905608	5.63885915063702	4.87777897193477	4.52627818521398	5.59143640885922	5.44451841326848	5.11487839812642	5.38280481251047	0.387781672867433	0.31039484574716	0.6225601620496
Merged-chr2-57181922-4	chr2	57181816	57182016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040356)	promoter-TSS (NR_040356)	85.0	NR_040633	75279.0	Mm.401987	NR_040633	ENSMUSG00000086396	4930555B11Rik	-	RIKEN cDNA 4930555B11 gene	ncRNA	6.72723913777521	6.80437507883539	7.55491566280772	6.91776457685527	6.90158145720183	7.26840033370791	7.00857637674632	6.98968509821582	0.00665127874537953	0.978348100025854	0.992331272967115
Merged-chr7-143059645-4	chr7	143059543	143059743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-5957.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	6.77304316825498	7.06932438388172	6.67858064438412	7.02469223693042	7.39093017641914	7.41989920091179	7.25861283718283	7.38748058265022	0.621759221201033	0.00147510454084039	0.0184122910511021
Merged-chr7-43660880-4	chr7	43660790	43660990	+	971.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031181)	promoter-TSS (NM_031181)	-729.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	5.05798381448318	4.44673851345367	4.37652104649814	4.63316151598094	4.71036834507738	5.04031026228823	4.81138662056122	4.68317412806725	0.337923702210867	0.36347455535265	0.668574361907056
Merged-chr13-3548064-4	chr13	3547937	3548137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	MLTR11A|LTR|ERVK	9962.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	6.17602704407904	5.76923681409314	6.51004114862802	6.37486025467342	5.52552488463408	5.98019762590505	6.00494007036148	5.94322289620695	-0.581625942678008	0.039021468177775	0.198521126683285
Merged-chr11-53463716-2	chr11	53463616	53463816	+	853.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001290789, exon 2 of 7)	exon (NM_001290789, exon 2 of 7)	6511.0	NM_027917	71774.0	Mm.274370	NM_027917	ENSMUSG00000018387	Shroom1	Apx|Shrm1	shroom family member 1	protein-coding	3.40350708999397	3.23432335650836	3.6064180122055	3.43478737816858	3.33698776703997	3.51755561971943	3.2167356892307	3.34581251296287	-0.241305610431789	0.646089529250384	0.851204149823479
Merged-chr19-12805896-3	chr19	12805777	12805977	+	636.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134152, intron 2 of 8)	L2|LINE|L2	7298.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	3.42118991398389	2.94449611170104	3.16508738776888	2.83485923815441	3.14462679530439	2.95426533170244	2.7636022998158	3.32321644541423	-0.167701073870184	0.795949263366241	0.921007780621414
Merged-chr1-39579349-4	chr1	39579244	39579444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1997.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	6.32561427466765	6.37335186862279	6.91201830086109	6.71203422867275	6.379347118488	6.44563884328124	6.47150427766605	6.4664911323038	-0.246832177500381	0.289909917027306	0.601969019372422
Merged-chr1-75192683-4	chr1	75192574	75192774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001288612)	promoter-TSS (NM_001288612)	514.0	NR_051998	52231.0	Mm.259326	NM_026187	ENSMUSG00000026199	Ankzf1	1300008P06Rik|2810025E10Rik|D1Ertd161e	ankyrin repeat and zinc finger domain containing 1	protein-coding	6.30889614638338	7.09318407802592	6.32969617587935	5.78113889354454	6.90999467505508	7.13758399869784	6.90257803461572	6.20236752829544	0.522479232418259	0.113303355120959	0.372180083035785
Merged-chr13-98944795-4	chr13	98944689	98944889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18405.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	5.63762191593732	5.59135635541626	5.56023783878957	5.41514815337188	5.50395713681414	5.81217086879518	5.70684741355756	5.35240076827672	0.0966498361476251	0.725806809046718	0.890921883682774
Merged-chr13-93498995-4	chr13	93498871	93499071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021310, exon 1 of 11)	exon (NM_021310, exon 1 of 11)	837.0	NM_021310	57748.0	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	4.94966724874321	5.00994780118047	5.33749500738514	4.85661537631191	5.23498063262166	5.1638912918034	5.310688102976	5.33374733124487	0.426883262818193	0.165809406311659	0.456772663351364
Merged-chr5-122965690-3	chr5	122965593	122965793	+	876.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 4 of 22)	intron (NM_001003953, intron 4 of 22)	23406.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	3.71960584595457	3.52730712025742	3.72017101607254	3.4748594518776	3.3062007332936	3.45058201456601	3.44511976090263	3.66967515342758	-0.455727371183446	0.368201845770637	0.672696077518176
Merged-chr17-3114963-4	chr17	3114840	3115040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134123)	promoter-TSS (NM_134123)	-32.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	7.8301517202921	7.96712799182643	8.09912602768403	8.20621154750287	8.12052557902874	8.06286702675182	8.26973696086651	8.12503983711959	0.135386096607291	0.422060885427252	0.714425732757276
Merged-chr10-127604747-4	chr10	127604639	127604839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	16409.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	8.84086314550156	9.0487671883754	9.16124067968985	9.12673815657813	8.59083576520822	8.67614679288572	8.92628173947554	8.79653343134559	-0.374265274179348	0.0186913224707795	0.122383812579684
Merged-chr3-105904457-4	chr3	105904430	105904630	+	889.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009631, exon 1 of 2)	5' UTR (NM_009631, exon 1 of 2)	109.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	3.72368371939319	3.18233416992395	3.34224719711488	3.69937257087093	3.61344005745409	3.57854408501015	3.50625751331952	3.72196813998688	0.291339717629463	0.582003017946447	0.816501953640427
Merged-chr5-107853960-3	chr5	107853863	107854063	+	715.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 1 of 17)	ORR1D1-int|LTR|ERVL-MaLR	21144.0	NM_007964	14020.0	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	3.48922383353331	3.26415248921458	3.74004486965929	3.66827918531652	3.61124467800248	3.54775152167714	3.17006666711172	3.54187823978455	-0.241993864651338	0.653413256110486	0.854997557892684
Merged-chr4-59544924-4	chr4	59544816	59545016	+	974.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178164, intron 1 of 13)	intron (NM_178164, intron 1 of 13)	4448.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	5.37196562420556	5.07182565210278	5.37289970970814	5.35928256438738	4.98857918752286	5.27578983577652	4.93559308878763	4.95584372014408	-0.489445323384617	0.111345240784698	0.368698618619051
Merged-chr4-132794938-4	chr4	132794850	132795050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033308, intron 1 of 5)	intron (NM_001033308, intron 1 of 5)	1414.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	6.66512779320218	6.60904031696892	6.30419638977011	6.35153112047098	6.85098353585649	6.82718699689823	6.74626958219762	6.6001680672785	0.401964451995079	0.0612978678847682	0.261970635735209
Merged-chr5-99246354-3	chr5	99246340	99246540	+	886.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	RLTR20C2_MM|LTR|ERVK	6487.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.25874055957218	3.7271032181641	3.43915192578045	3.06302662553006	3.54009150544437	3.37290142743402	3.53181035884322	3.54464211798561	0.374156263713797	0.495700137812315	0.765874409085869
Merged-chr6-135026391-1	chr6	135026291	135026491	+	656.5	f0_balb.idr	Intergenic	Intergenic	14779.0	NM_026360	67755.0	Mm.166524	NM_026360	ENSMUSG00000030204	Ddx47	4930588A18Rik|C77285	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding	3.32879666401374	3.2370758138234	3.05299227858411	3.28703584612405	2.66718094716273	3.03278151717246	2.84596073611721	3.16900328673809	-1.2552488107103	0.0500065242086638	0.231802146955504
Merged-chr1-138543687-3	chr1	138543584	138543784	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 3 of 9)	RLTR11B|LTR|ERVK	76073.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	3.65650143274097	4.01052296996865	4.15177907277826	3.98525802317539	3.60559636074654	3.89249581399532	3.86198254853227	4.1074566868017	-0.256790663992281	0.581946391381963	0.816461587735577
Merged-chr17-26498443-3	chr17	26498318	26498518	+	996.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	10054.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	3.87049873626761	3.93650548283227	3.42464819029615	3.16369645074015	3.49760759749576	3.5419115219638	3.22367356152027	3.29904484838172	-0.775251790007884	0.183168804704227	0.480018127095547
Merged-chr3-127490183-3	chr3	127490076	127490276	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	URR1B|DNA|hAT-Charlie	8939.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.77743116716372	3.62130913515986	3.69755359586786	2.46448676704212	6.23716432186534	5.64866531654933	5.95975363033982	6.13014419250175	8.70605436593318	2.34220518626055e-27	2.00862437292578e-24
Merged-chr8-92881443-4	chr8	92881324	92881524	+	978.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357375, intron 7 of 12)	intron (NM_001357375, intron 7 of 12)	-19971.0	NM_027112	69543.0	Mm.440514	NM_027112	ENSMUSG00000078144	Capns2	2310005G05Rik|30K-2	calpain, small subunit 2	protein-coding	4.30138088347634	4.85876175202665	4.3020112383271	4.453028604685	5.68934000570882	5.57467766352242	5.21926402880271	4.77572660385092	1.68273649964363	1.62004530275307e-05	0.000424396128801966
Merged-chr5-54025827-4	chr5	54025738	54025938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	27315.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	5.93452956282516	5.85528831562292	5.80273463735308	5.83298946863453	5.66414788299602	5.74898060915613	5.45859246626702	5.54058028513298	-0.407779313314927	0.11048713042532	0.367047673692889
Merged-chr18-61108680-4	chr18	61108582	61108782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 2 of 21)	intron (NM_001037859, intron 2 of 21)	3110.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	8.14627723552374	8.26672917570857	8.42506108616844	8.45111777747558	8.32643743886578	8.49690510046352	8.44039611831484	8.08384239155431	0.0166847258780323	0.922504989510484	0.971298693028147
Merged-chr4-139156664-4	chr4	139156588	139156788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23967.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	6.55217949053912	6.15717743047219	6.31875119372251	6.28609567906551	5.96428735153493	5.86278543727794	5.81335082583411	5.65023724505782	-0.773919306626732	0.00169822339680362	0.0205749520274187
Merged-chr19-6141091-4	chr19	6140987	6141187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019722)	promoter-TSS (NM_019722)	50.0	NM_019722	56327.0	Mm.21071	NM_019722	ENSMUSG00000024944	Arl2	2610009M23Rik|AI115441|AW553335	ADP-ribosylation factor-like 2	protein-coding	6.57731811359099	6.98570133521647	6.71459123508226	6.17807504997745	6.66199467768137	6.87597015771497	6.26069299793228	6.4391211618772	-0.0824389172059833	0.757684509657986	0.904815773586341
Merged-chr15-80117372-4	chr15	80117262	80117462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_207708, exon 4 of 4)	3' UTR (NM_207708, exon 4 of 4)	-15792.0	NM_025609	66513.0	Mm.288245	NM_025609	ENSMUSG00000022414	Tab1	2310012M03Rik|Map3k7ip1|b2b449Clo	TGF-beta activated kinase 1/MAP3K7 binding protein 1	protein-coding	5.29718167697806	5.71228326830586	5.19411379756227	5.62515324469194	6.04260016493629	5.30178093384757	5.80454276170473	5.73976234889561	0.456948337857361	0.13973451704379	0.415685591824798
Merged-chr9-119948992-4	chr9	119948905	119949105	+	848.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028735, intron 9 of 28)	intron (NM_028735, intron 9 of 28)	11399.0	NM_028735	74052.0	Mm.189573	NM_028735	ENSMUSG00000032514	Ttc21a	4921538N17Rik|AA387572|Thm2	tetratricopeptide repeat domain 21A	protein-coding	4.54658665265383	4.70740710528449	4.19670241473604	4.158809356555	4.51319369743714	4.63961569921199	4.2748754101742	4.24352092934285	0.0331986087630962	0.935131421101719	0.976465285317276
Merged-chr9-24349664-4	chr9	24349589	24349789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153451.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	5.55092524740723	4.8929408707552	5.41448398987772	6.08293967661916	5.26322371836011	5.3020236608206	5.38732581874931	5.57370993985032	-0.32807106676868	0.361593584334399	0.666836016771723
Merged-chr4-40774458-4	chr4	40774328	40774528	+	834.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID2|SINE|ID	-16543.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	3.46769914992555	3.72069460975826	3.64038842811648	3.24826760337977	3.56200445380397	3.81317903874135	3.82217090207742	3.83706413443449	0.746827390602047	0.13276259526174	0.40574967843253
Merged-chr2-165318060-4	chr2	165317967	165318167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	-1716.0	NM_001302754	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	6.4277658015522	5.97617447754068	6.41270619220498	6.65714751920592	5.88935121105058	5.64621806506714	6.12898141248152	6.05239880618585	-0.704794594445185	0.00845234626366105	0.069786516030754
Merged-chr11-86752525-2	chr11	86752425	86752625	+	880.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	(A)n|Simple_repeat|Simple_repeat	5042.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	2.89726047234106	2.79993780681017	2.54067488178485	2.66729794541279	2.87816861889495	3.186739014033	2.88701273086419	3.1767013481711	1.35476307318405	0.0330047683707792	0.17828275805871
Merged-chr13-33003682-4	chr13	33003577	33003777	+	785.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009256)	promoter-TSS (NM_009256)	-864.0	NM_009256	20723.0	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	3.49916291668344	3.53372649120025	3.437072891979	3.45323809837378	3.75563700431891	3.89556660702895	3.85265468389922	4.03893026332813	1.23532116179348	0.00745940622734063	0.0638088061357864
Merged-chr4-45018607-4	chr4	45018558	45018758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285800)	promoter-TSS (NM_001285800)	49.0	NM_001285800	64424.0	Mm.282932	NM_022811	ENSMUSG00000028318	Polr1e	53kDa|AU042259|D030019D19Rik|Paf53|Praf1	polymerase (RNA) I polypeptide E	protein-coding	6.96905255681378	6.83805856158856	6.84222544168557	6.81481249486872	6.84718272301639	6.73303703811458	6.76654241477746	6.36933734707085	-0.234185118037444	0.265634603988027	0.577313837051198
Merged-chr5-99497617-2	chr5	99497517	99497717	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	231443.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	2.73194894667133	2.85276937123577	2.87806293394045	2.69819387716328	3.53275750191747	3.24368406191424	3.17251906558777	3.06960922353645	2.04197462524867	0.000629832008872697	0.00927456550170523
Merged-chr4-102534224-4	chr4	102534126	102534326	+	853.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-35834.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	3.32143711530623	3.87540869799948	3.32175644890929	3.83404334957349	4.47741808077238	3.96813711035003	4.23840356270878	4.4725252725001	1.98015820797385	0.0632892942134405	0.267002647748843
Merged-chr11-104387544-4	chr11	104387439	104387639	+	794.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 3 of 14)	intron (NM_001359634, intron 3 of 14)	54752.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	4.51021637903987	4.59221126874707	4.11018372440096	4.55617575853557	4.17433448786098	4.43182765961836	4.04083353283559	4.38797291264023	-0.477054687538783	0.238084335785763	0.548416068635151
Merged-chr6-83488708-4	chr6	83488595	83488795	+	897.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149734, intron 3 of 6)	intron (NR_149734, intron 3 of 6)	18274.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	4.34718113737578	4.15764034120387	4.04427625130691	4.51518358133337	3.74038757651979	3.55489342418365	4.28848210148763	4.04185921383544	-0.919766488407141	0.0566857928972125	0.249383443629189
Merged-chr13-112058306-4	chr13	112058195	112058395	+	877.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	190359.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	3.57582305144605	3.82038756387345	4.11040495116879	3.7502325326897	3.8713830089171	3.63120571264971	3.92362668737969	3.63316151630827	-0.13875105603458	0.771195554485315	0.91036734532567
Merged-chr7-101364989-4	chr7	101364902	101365102	+	910.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	MIRc|SINE|MIR	-13120.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	4.04108143627081	3.9677113831768	3.77369047002985	4.41662942814158	4.34432661952295	3.8325147554448	3.97578232631307	4.30068937522862	0.12400354855319	0.793500068934542	0.920058340501267
Merged-chr7-143459795-3	chr7	143459707	143459907	+	668.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001161624, exon 2 of 4)	exon (NM_001161624, exon 2 of 4)	1243.0	NM_009876	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	3.2573951827054	3.19536655448529	3.42268626076122	3.14072871390738	3.1228098929849	3.24675470443364	3.1864447823601	3.56623875697254	0.137587857140192	0.802761277942005	0.923936032101707
Merged-chr6-134102599-4	chr6	134102489	134102689	+	854.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	66889.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	3.97305873285812	4.13553203816866	3.81359816184841	4.22575090286345	4.36205698087561	3.98985657979066	4.05278698201576	3.86703188329448	0.0884546959013382	0.84326969011292	0.940459539910433
Merged-chr2-125866256-4	chr2	125866167	125866367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291002)	promoter-TSS (NM_001291002)	44.0	NM_001291002	69976.0	Mm.20216	NM_175154	ENSMUSG00000027207	Galk2	2810017M24Rik|AI327030|Gk2	galactokinase 2	protein-coding	6.46433554595305	6.19983241851218	5.65185573614963	6.21304069896734	6.14862374824426	5.6179457478028	5.59479969580107	6.07904310794342	-0.424607443154492	0.152016694012097	0.435896601552091
Merged-chr5-108270674-4	chr5	108270522	108270722	+	818.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026106, intron 1 of 2)	intron (NM_026106, intron 1 of 2)	1725.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	3.070518461263	3.07252714219063	3.07089423665195	2.94619281764314	3.04039109115688	3.29871477637684	3.17501974250738	3.12890832372417	0.505674401131885	0.363010688364419	0.668202896043108
Merged-chr19-9914023-4	chr19	9913934	9914134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14501.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	6.63127376703574	6.72358669226023	7.05407351950334	6.80490405430944	6.39369251186879	6.27014652214399	6.3295441604965	6.27995201627245	-0.710123841563068	0.00108372882583684	0.0143487228597917
Merged-chr8-115614338-4	chr8	115614244	115614444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92550.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	7.33384822078877	6.93803412933046	7.07622399390394	7.22181107243213	7.05165190646116	6.9276365487054	7.18689615786089	6.99723476358718	-0.146827081589551	0.454628708366897	0.73842541206324
Merged-chr11-48903075-3	chr11	48902992	48903192	+	587.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024230)	promoter-TSS (NM_001024230)	-940.0	NM_001024230	432555.0	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	3.6068532282551	3.47446579060789	3.60735306174614	3.58337224339834	3.53347775130969	3.55264097354204	3.8301518544232	3.55139364369645	0.165516738624836	0.730050038375408	0.892886897857713
Merged-chr5-135545475-4	chr5	135545356	135545556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146001)	promoter-TSS (NM_146001)	-334.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	9.10129160635379	9.24309476537728	9.30701404380277	9.05266207472404	8.86163240278825	9.28740078861027	9.13020434885133	9.09043157973581	-0.0991929510827105	0.532458553440016	0.78817714997576
Merged-chr2-6256984-4	chr2	6256881	6257081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-43987.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	4.56695610456077	5.07367735759777	4.79995337259104	5.5360328007499	5.67977299614675	5.1750269435994	5.37613612143367	5.16590683934284	0.550392363472127	0.152556181277754	0.436763594091937
Merged-chr11-60538802-5	chr11	60538629	60538829	+	998.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172943, exon 1 of 4)	exon (NM_172943, exon 1 of 4)	1046.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	4.61020833305574	4.91219638861679	4.65484670292055	4.51440801267224	5.30145754762807	4.95459104173229	4.8676674667185	5.31151414170048	0.913915092202812	0.00703122694692958	0.0610559598457364
Merged-chr6-115879908-4	chr6	115879779	115879979	+	961.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167763, intron 5 of 28)	intron (NM_001167763, intron 5 of 28)	26351.0	NM_031177	81896.0	Mm.333335	NM_031177	ENSMUSG00000030323	Ift122	C86139|Wdr10|sopb	intraflagellar transport 122	protein-coding	4.42877358931175	4.75561202170159	4.68145552394945	5.17674704285372	4.39781457603787	4.24586736938314	4.69657957570158	4.75233954941838	-0.581455308141054	0.149730284427837	0.432148727406089
Merged-chr3-10440094-4	chr3	10439983	10440183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029068)	promoter-TSS (NM_029068)	47.0	NM_029068	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	6.60282314170549	6.8873511424502	6.83211675429575	6.97536267246795	6.86291600727494	7.03610263038447	7.16645983290752	6.63216769552382	0.134294444140415	0.536362770932543	0.790380839124018
Merged-chr1-54896804-4	chr1	54896812	54897012	+	923.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	29475.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	4.16651597388794	3.62022532359123	3.91106536785492	3.86406696788874	3.61052668108616	3.64596147758946	3.63565426715847	4.04310399894558	-0.455138466027382	0.348345896929751	0.656203091647814
Merged-chr7-35555958-4	chr7	35555843	35556043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033080)	promoter-TSS (NM_033080)	-15.0	NM_033080	110959.0	Mm.410206	NM_033080	ENSMUSG00000034875	Nudt19	D7Rp2|D7Rp2-r|D7Rp2-s|D7Rp2e|RP2-r|RP2-s	nudix (nucleoside diphosphate linked moiety X)-type motif 19	protein-coding	5.51365412715926	5.4794967200281	5.81975230031659	5.37131854420997	5.74275688647376	5.69092706481301	5.91785845841819	5.74601760902014	0.39616613556371	0.140097050149451	0.416157580026199
Merged-chr13-100124898-4	chr13	100124813	100125013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011420)	promoter-TSS (NM_011420)	58.0	NM_011420	20595.0	Mm.2025	NM_011420	ENSMUSG00000021645	Smn1	AI849087|Gemin1|Smn	survival motor neuron 1	protein-coding	5.99528267073781	6.02529906882193	6.0576930541446	5.97438694720952	5.75372808205783	5.75585859834698	5.68698824471922	5.78787653617477	-0.425377839947777	0.0774504139958933	0.30102648761873
Merged-chr14-21890642-4	chr14	21890541	21890741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-41731.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	7.83652029075555	8.05272737912322	7.64847260499694	7.75104754373708	7.68578194100135	7.77373621760541	7.43822300379964	7.38918084393026	-0.323799434253986	0.0870747337490165	0.321801270691654
Merged-chr8-67956770-1	chr8	67956670	67956870	+	631.0	f0_balb.idr	intron (NM_177698, intron 3 of 14)	intron (NM_177698, intron 3 of 14)	17804.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	3.17830582326012	3.24429724055121	3.12157316393515	3.12939130254206	2.88911552684638	3.2906721486381	2.92428822980064	2.93201630944861	-0.634275293917321	0.282112070989853	0.594254538219845
Merged-chr3-144706562-3	chr3	144706439	144706639	+	906.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 4 of 10)	intron (NM_001282037, intron 4 of 10)	13796.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	3.5994847694112	3.81188730544118	4.24678313558416	3.58979233730531	3.48161811928895	3.6002628867634	3.40793032052418	3.54066844390727	-1.01812209577766	0.0514367403704262	0.235569150870323
Merged-chr9-100520761-4	chr9	100520653	100520853	+	753.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 1 of 3)	intron (NM_010878, intron 1 of 3)	-13897.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	3.56712574995502	3.2767718206665	3.44487733903226	3.55860231102865	4.21818141196467	4.00211500428413	3.76718433777723	3.73059378522895	1.4237481129901	0.00401166524092905	0.0401555787068048
Merged-chr9-90235019-4	chr9	90234907	90235107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	35762.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	5.32534208884364	6.21668477143352	5.9605680562722	5.95292102840806	6.0229479100574	5.84615685978727	6.12930375139821	5.71805830940386	0.0518726452741341	0.858801765746072	0.946576014812915
Merged-chr5-100628154-4	chr5	100628026	100628226	+	861.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46130.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	4.03223790218054	4.3439438102484	4.08453018004178	3.88493291848304	4.39410317046472	4.56760093990394	4.16396283424171	4.3551404207344	0.715889802446199	0.079435970312261	0.305137800710471
Merged-chr9-5299366-3	chr9	5299237	5299437	+	953.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009807, exon 2 of 10)	exon (NM_009807, exon 2 of 10)	820.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	3.74037162620045	3.77621131356508	3.98016655163103	3.89875714552357	3.84244139348868	3.74833609063353	3.43620313239663	3.83981221170457	-0.361552293389466	0.443158836493036	0.729779110682633
Merged-chr2-80026228-4	chr2	80026103	80026303	+	965.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	12699.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	5.49810024517475	5.06372604997055	5.18275166811183	5.4378543192201	5.48036908142724	5.18560870424224	5.30985692106901	4.9667890138456	-0.0974967603917374	0.756685006280701	0.904421044835673
Merged-chr18-39607366-4	chr18	39607263	39607463	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120118.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.93025143760631	5.01888833177449	5.42423195117853	5.29340824654419	4.87200147902654	5.14386047223109	5.23487039065514	4.96485891664937	-0.253114723405436	0.433826167492309	0.723256357491443
Merged-chr12-112620649-4	chr12	112620575	112620775	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	628.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	4.0393383468845	4.03563822311588	3.99240323080584	3.89566991713446	4.16112047693705	3.95864550992752	3.97556677981575	3.99004895209505	0.125467420771782	0.764004533858585	0.907492132891533
Merged-chr7-125496012-4	chr7	125495871	125496071	+	861.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4429.0	NM_026330	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	3.99837317234681	3.95218164184642	3.90564759609944	4.03468964672062	3.82436669116922	3.75473254567291	3.78977921699391	3.74947102643886	-0.562664181996489	0.199131641763158	0.500933329503325
Merged-chr5-122731483-3	chr5	122731387	122731587	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145358, exon 16 of 16)	3' UTR (NM_145358, exon 16 of 16)	23943.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	3.73883787685945	3.76495171037772	3.6871610243472	3.38726514370883	3.71743361068714	3.75112086936464	3.67226381795888	3.92668688305266	0.395846023372749	0.406285982276462	0.702813973926921
Merged-chr9-83957079-4	chr9	83956998	83957198	+	922.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199195, intron 3 of 10)	intron (NM_199195, intron 3 of 10)	8317.0	NM_199195	12040.0	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	4.36049577954683	4.64974347903041	4.54044015794545	4.58204807038313	4.75919766495861	4.44177261584009	5.05177583546654	4.45109849722042	0.353761318839811	0.346545119521625	0.654753888817761
Merged-chr6-3346129-3	chr6	3346019	3346219	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53452.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	3.34233556013757	3.22700222701685	3.34275497676009	2.4488083115537	5.27067805217809	5.0634552698819	5.07598232556715	4.88175733017699	8.87768485991487	3.18805182320222e-21	1.25371458963376e-18
Merged-chr1-155532944-3	chr1	155532842	155533042	+	842.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5831.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	3.27160502027866	2.99832145306593	3.32870075919318	3.28283302468015	3.43561473935838	3.38431850909829	3.25987660980684	3.32689145222417	0.460770246301516	0.389759029796356	0.690041185689413
Merged-chr13-112995772-4	chr13	112995673	112995873	+	696.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037914, intron 3 of 6)	intron (NM_001037914, intron 3 of 6)	1905.0	NM_001037914	622408.0	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	3.30776867399948	3.54178474007515	3.42926484019101	3.45635886140577	3.41183434242932	3.48398189633089	3.71973141218902	3.63994252717357	0.416888304815762	0.40243837835679	0.699908650354484
Merged-chr18-53862487-1	chr18	53862387	53862587	+	1000.0	f0_balb.idr	5' UTR (NM_152809, exon 1 of 13)	5' UTR (NM_152809, exon 1 of 13)	374.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	4.86544230717857	4.74593577909348	4.71487877953997	4.90530259856792	4.82526678029045	5.03826816486518	4.94481909022698	4.71183413043556	0.128921482418943	0.694515642675122	0.875977760392184
Merged-chr6-88379942-4	chr6	88379855	88380055	+	928.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023060, intron 1 of 6)	intron (NM_023060, intron 1 of 6)	66584.0	NM_023060	65967.0	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|mSelB|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	4.7521254781453	4.33801323776707	4.57038047800336	4.90511251227837	4.31096993988097	4.33773245534383	4.46882306395668	4.44389898910953	-0.640279780960417	0.0951763330961998	0.337580038541678
Merged-chr19-5610020-7	chr19	5609884	5610084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037603)	promoter-TSS (NR_037603)	110.0	NM_001199249	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	5.91955834491713	6.40417724500598	5.77472896136213	5.29155288412284	6.09385021453803	6.26704566360204	5.86723651363178	6.10768779232595	0.297544746710515	0.345580034729519	0.653907576149413
Merged-chr19-3911892-4	chr19	3911785	3911985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271443, intron 1 of 6)	intron (NM_001271443, intron 1 of 6)	889.0	NM_144870	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	5.96439308070493	5.7205437350607	5.38042968158873	5.61850830159278	5.84369291843064	5.79118502838663	5.73819246070547	5.55695347040256	0.0957917309857288	0.72553966473619	0.890921883682774
Merged-chr5-105499591-3	chr5	105499492	105499692	+	996.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-19879.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	4.69493099846287	4.76212126022969	4.62495646592204	4.12169985019728	4.06862015040934	4.55969035081327	4.27528491102202	4.19399701138244	-0.664479351197321	0.118070847760526	0.380134255210221
Merged-chr2-75777331-4	chr2	75777197	75777397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54880.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	6.81396130439674	6.79756329673511	6.62189704906365	6.76209661723049	6.63857696566115	6.84589406327104	6.68061897241965	7.02490999970413	0.0674013989607821	0.744489186018414	0.899296531468148
Merged-chr12-102002337-3	chr12	102002222	102002422	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016856, intron 13 of 14)	intron (NM_016856, intron 13 of 14)	26348.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	3.43518612061408	3.6641835881101	3.69781214344964	3.40780322366524	4.30228995744394	3.6958438569725	4.4927810124799	4.44806233262046	1.9987842121774	3.1366507922312e-05	0.000754524051166694
Merged-chr17-74570816-4	chr17	74570712	74570912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007566, intron 7 of 72)	intron (NM_007566, intron 7 of 72)	42517.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	5.80073231098122	5.29065755272009	5.65570130082336	5.95492155788228	5.45901202980542	5.6672735044494	5.79480683044683	5.75083925896757	-0.073011923922808	0.80197265951681	0.923638204160753
Merged-chr2-91966481-4	chr2	91966400	91966600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-2937.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	7.20972319012966	7.05487277928594	6.91632010770084	6.71548789753602	7.01044186040473	6.9383415924249	6.86799933642577	7.08478532644579	0.00758078371056657	0.970941269133156	0.989555055159975
Merged-chr13-23517698-4	chr13	23517598	23517798	+	866.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Met-i|tRNA|tRNA	-13346.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	3.94653279709866	3.75119826212124	3.84650193970511	3.91615616256072	4.0764764755262	3.91239459694676	4.1080620318811	3.94478325492165	0.405432740844765	0.341165403082673	0.650275314861081
Merged-chr7-98489971-4	chr7	98489894	98490094	+	903.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4228.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	4.72378593083889	4.3761695218678	4.79612943174766	4.85544548999647	4.74866844047225	4.61296623609326	4.62706936642201	4.47912939164226	-0.176968348964214	0.625118831681092	0.839735974131569
Merged-chr3-69374157-4	chr3	69373995	69374195	+	818.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178726, intron 1 of 3)	MLT1A0|LTR|ERVL-MaLR	57177.0	NM_178726	242083.0	Mm.40577	NM_178726	ENSMUSG00000027784	Ppm1l	3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175	protein phosphatase 1 (formerly 2C)-like	protein-coding	3.69405971483616	3.60450984920151	3.9337959326817	3.76086925961394	3.82401614247438	3.70111839135317	3.62676968362968	3.58287885558496	-0.179910329754806	0.701405446468183	0.879679639746252
Merged-chr11-69098809-4	chr11	69098696	69098896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011065)	promoter-TSS (NM_011065)	-153.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	8.68848398637023	8.69009620465768	8.46241865765726	8.40831426687209	8.57488166371752	8.6900129326853	8.48764483301007	8.41036393154579	-0.0252838640011916	0.875458688129274	0.953217111662346
Merged-chr19-23134249-4	chr19	23134147	23134347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6979.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	6.14479903152098	6.45944892708329	6.51030958268504	6.19827385850922	6.32664972978225	6.62038729172639	6.32665786351178	6.0985616461318	0.0327388594337053	0.891288831112412	0.959325726463795
Merged-chr12-108792866-4	chr12	108792769	108792969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009537)	promoter-TSS (NM_009537)	-442.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	8.37948262611046	8.55702115982429	8.34286583989482	8.23086536165394	8.57230870351145	8.42302418366967	8.65979097019325	8.34292409024084	0.162150317941327	0.324158351214279	0.635697247109355
Merged-chr2-35661555-3	chr2	35661454	35661654	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001114125, exon 3 of 17)	exon (NM_001114125, exon 3 of 17)	-30440.0	NM_001001602	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	4.48734867818776	3.7861082799513	4.45324805554558	4.204389285334	3.79587843492591	3.82485546144282	4.06757279051495	3.98468537362415	-0.886784570294764	0.0547252638698461	0.244310684708466
Merged-chr19-34241401-4	chr19	34241284	34241484	+	829.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007392, exon 9 of 9)	3' UTR (NM_007392, exon 9 of 9)	8759.0	NM_001360720	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	3.4875147501795	3.31456880517533	3.48795584481007	3.48753620118021	3.91390083181645	4.20001589194953	3.64615410953093	3.81182510129052	1.38246088969796	0.00445235118601455	0.0435860136252689
Merged-chr2-142766274-3	chr2	142766169	142766369	+	700.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 12 of 26)	(A)n|Simple_repeat|Simple_repeat	135195.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	3.31613143374161	3.09806818679653	3.42243833804311	3.68797048546609	3.31504669983058	3.18357359259	3.06508912210736	3.07314386224342	-0.89311599711301	0.130370968214924	0.40193242336713
Merged-chr7-115132555-3	chr7	115132468	115132668	+	721.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	181294.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	3.71034642739705	3.47232063013429	3.61943442842484	3.74001939272083	3.14132790309163	3.06095960317125	3.15879305222185	3.2951181162012	-1.78365929585875	0.00153432770313178	0.0190222670949594
Merged-chr15-10486633-2	chr15	10486533	10486733	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026396)	promoter-TSS (NM_026396)	595.0	NM_001289447	19355.0	Mm.38376	NM_011232	ENSMUSG00000022248	Rad1	mRAD1	RAD1 checkpoint DNA exonuclease	protein-coding	3.05398883337066	2.95537665333312	3.22525937902914	2.95293380427804	3.0250629584399	3.10079430832678	3.04355805707508	3.27513484435784	0.279410219462834	0.624157753182752	0.839289014882591
Merged-chr12-69475569-4	chr12	69475464	69475664	+	832.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038060)	promoter-TSS (NR_038060)	-14.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	4.01970198510066	4.16772929264639	4.20116647098673	4.30899737467478	3.90026287905085	4.19186262886339	3.85057206827638	3.74965873637695	-0.688635048178477	0.11305448663762	0.371622116208515
Merged-chr1-194962394-4	chr1	194962302	194962502	+	982.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033564, intron 2 of 4)	intron (NR_033564, intron 2 of 4)	14557.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	4.79995766466232	4.81174457912961	4.57875371251647	4.64516292793146	4.77285533946409	4.2794853100004	4.29184008279622	4.61556328397641	-0.411342070714758	0.276320302422462	0.588375098902968
Merged-chr14-30549178-4	chr14	30549147	30549347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009388, exon 1 of 14)	5' UTR (NM_009388, exon 1 of 14)	116.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	6.55604205998545	6.71967213977175	7.26745851939458	6.6120045151214	6.54373641316854	6.41434252827431	6.72380430691296	6.96334709071815	-0.196002889990522	0.439686505066447	0.727425871224001
Merged-chr6-38531476-6	chr6	38531340	38531540	+	773.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3421.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	4.25122225512631	4.11824765337445	4.33916509938881	4.18750378017467	4.12779403934264	4.33269600182947	4.61514963656042	4.15573772804416	0.233384163508061	0.561076831842555	0.804849597634179
Merged-chr8-119826596-4	chr8	119826502	119826702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	13977.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	6.09568331732607	5.93134179007041	5.76100147265403	5.92270930499529	6.06182814841095	6.14749562396222	5.94248117168092	5.56381283764223	0.0291813161237774	0.910930958154824	0.966904162861598
Merged-chr11-62846041-4	chr11	62845954	62846154	+	855.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1069.0	NM_001033669	213980.0	Mm.482259	NM_001033669	ENSMUSG00000090173	Fbxw10	Fbw10|HREP|SM25H2|SM2SH2	F-box and WD-40 domain protein 10	protein-coding	4.04751553751002	3.61017538068991	3.6823952942178	3.8874843756439	4.084669137385	4.07664909912963	3.93683559891917	4.25446827403913	0.735922059649763	0.097401247162459	0.341999446507374
Merged-chr4-119965244-3	chr4	119965137	119965337	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	150559.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	4.49269714813978	4.62557982934359	4.94101961809112	5.01509337634892	3.82552075164338	4.06413297016195	4.20044038293023	4.44855609364929	-1.53146400690562	0.000313195081023829	0.00524670724248809
Merged-chr15-58046794-4	chr15	58046677	58046877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001042438)	TTS (NM_001042438)	-12483.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	5.46838140902252	5.4865016735976	5.40907338200193	5.46858504151584	5.81387469026277	5.58624663408239	5.86072778187618	5.88668345849704	0.56278109614857	0.0297007657316442	0.166145249839004
Merged-chr2-32583601-4	chr2	32583517	32583717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198191, exon 10 of 10)	3' UTR (NM_198191, exon 10 of 10)	-3461.0	NM_001276425	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	6.17309153298891	6.40934340959845	5.75359384675628	5.88563232128526	6.27119620746865	6.3887656995631	6.35994394053938	6.24686787201555	0.367471888115113	0.1458539266165	0.42565232470349
Merged-chr4-45949715-1	chr4	45949615	45949815	+	671.0	f1_balb.idr	intron (NM_198660, intron 37 of 37)	intron (NM_198660, intron 37 of 37)	-15620.0	NM_001290475	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	3.60141194085547	3.50676410475419	3.49339666204092	3.08186304732475	3.53613695179609	3.72128566398684	3.30040944387035	3.8362910849294	0.608287967993581	0.261122844084673	0.573005209121725
Merged-chr2-130529585-3	chr2	130529505	130529705	+	865.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 7 of 21)	intron (NM_001355161, intron 7 of 21)	34144.0	NR_040348	321014.0	Mm.442588	NR_040348	ENSMUSG00000060029	4930473A02Rik	-	RIKEN cDNA 4930473A02 gene	ncRNA	3.45335372476646	3.72292468915902	3.80700478327646	3.773526459416	3.19225027144473	3.38032878265583	3.32101867668513	3.61519565163385	-1.08118717584957	0.0404835211353004	0.203285823695912
Merged-chr13-35209775-4	chr13	35209661	35209861	+	932.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_126478)	TTS (NR_126478)	2287.0	NR_126478	75543.0	Mm.489052	NR_126478	ENSMUSG00000113770	1700019C18Rik	-	RIKEN cDNA 1700019C18 gene	ncRNA	5.06245649458459	4.86027723295212	5.03243618612304	4.99464692069308	4.71208920089293	4.67522772582968	4.65166154146873	4.75039204610998	-0.5953256032281	0.0682419461020401	0.278910239035486
Merged-chr11-80163640-3	chr11	80163552	80163752	+	799.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 5 of 10)	intron (NM_172133, intron 5 of 10)	9490.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	3.40729330344856	3.49107989794156	3.67882253126046	3.55772780964208	3.66712925433932	3.74616527603124	3.50945894272579	3.34444152447945	0.128770672971912	0.79579992618938	0.920939778337976
Merged-chr3-101494036-4	chr3	101493948	101494148	+	920.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110659.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	4.2886928618436	4.37909416100895	4.03380898930816	4.52966781003453	4.40822216399915	4.59281600010224	4.48189404619822	4.49990798543121	0.357143537901452	0.359958681522378	0.665611988334495
Merged-chr17-24533779-4	chr17	24533677	24533877	+	957.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177375)	promoter-TSS (NM_177375)	-30.0	NM_177375	328778.0	Mm.266033	NM_177375	ENSMUSG00000079657	Rab26	A830020M03Rik	RAB26, member RAS oncogene family	protein-coding	5.17420081259622	5.28766139236502	5.07788481558128	4.96626081835747	5.30339617927413	4.82429531440237	5.3492407773232	4.96934245875749	0.0318311951673579	0.921629268440001	0.9709178534782
Merged-chr11-110472289-4	chr11	110472176	110472376	+	924.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	-6239.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	4.91050962696077	5.21796601963385	4.69689214870762	4.21977299534541	5.78744205560004	5.52038632470838	5.66100137274547	5.25394708744272	1.4324354438667	9.92110181394552e-05	0.00201752462591188
Merged-chr2-68861212-7	chr2	68861099	68861299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172856)	promoter-TSS (NM_172856)	-242.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	6.42269955291877	6.54486583495444	7.0321493320562	6.56515508885752	6.07118135423232	6.52795444783386	6.35499086898942	6.69021968613948	-0.344598136347086	0.176214291386971	0.47123105709258
Merged-chr2-103483537-4	chr2	103483443	103483643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009804, intron 1 of 12)	intron (NM_009804, intron 1 of 12)	1610.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	5.51775727263944	5.40795451494227	5.62424792964398	5.3842479629129	5.61625774224124	5.57924248965307	5.62070991552433	5.56866352316191	0.209921907290513	0.427945642853804	0.719041213150412
Merged-chr13-3610134-4	chr13	3610045	3610245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360838, intron 1 of 19)	intron (NM_001360838, intron 1 of 19)	963.0	NM_134063	105203.0	Mm.221609	NM_134063	ENSMUSG00000033799	Fam208b	AI645998|Pap20|mKIAA2006	family with sequence similarity 208, member B	protein-coding	5.82492100205963	5.82582450509832	5.53849479735155	5.54748261549646	5.84332274922276	5.953224577995	5.62216950549203	6.13071741159292	0.34972452859812	0.190527266523155	0.489802508912514
Merged-chr18-53158816-4	chr18	53158720	53158920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17472.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	5.74411760277712	5.65160484791969	5.58398430502704	5.92667429085526	5.92984848023735	5.61225591598123	6.32011911171236	5.83806271767911	0.334452536611061	0.231604380233813	0.541189724861251
Merged-chr17-34031163-4	chr17	34031072	34031272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011306)	promoter-TSS (NM_011306)	518.0	NM_001077709	14977.0	Mm.18556	NM_008202	ENSMUSG00000024327	Slc39a7	AA408174|AI117660|AL024048|H-2Ke4|H2-Ke4|Ke-4|Ke4|Ring5|Zip7	solute carrier family 39 (zinc transporter), member 7	protein-coding	4.74420218869739	4.94476667702279	5.29487694380565	4.50187494199396	5.12354186785096	5.07138587718014	4.68212317339064	4.85772012772705	0.1185891325574	0.749919181933563	0.901564247164595
Merged-chr3-147071158-4	chr3	147071054	147071254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	218787.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	6.50350615369697	6.60779677437178	6.21836472457606	6.29028997097966	6.43910653780987	6.43425472348706	6.30108721825621	6.13100586942999	-0.109802172700807	0.634654148001366	0.845322747017014
Merged-chr5-124492765-4	chr5	124492667	124492867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021430)	TTS (NM_021430)	9612.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	7.59800696577343	8.1277684665354	7.92626418554462	8.05078134721999	8.07678430902935	7.91820013376412	8.23094360219911	8.13816571869767	0.191557361796253	0.297770698645939	0.609981309434463
Merged-chr11-23823411-4	chr11	23823318	23823518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52448.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	7.59945251821701	7.55405029681461	7.5593539786621	7.28683418909277	7.13884436289222	6.95750841089499	6.90512235719914	6.98931733339079	-0.663789345280551	0.000554658808971356	0.00838395824246595
Merged-chr5-148995262-4	chr5	148995171	148995371	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102383)	promoter-TSS (NR_102383)	-56.0	NR_102384	319982.0	Mm.33303	NR_102383	ENSMUSG00000106951	5930430L01Rik	-	RIKEN cDNA 5930430L01 gene	ncRNA	5.2688043873335	4.99971998794317	5.55389443910657	5.61776194393266	5.16341731100176	5.6210809873941	5.33514211359991	5.49806724614697	0.0219454857259011	0.944808209435498	0.98015658397087
Merged-chr12-32944208-4	chr12	32944135	32944335	+	941.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_044986, intron 2 of 5)	intron (NR_044986, intron 2 of 5)	9554.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	5.07764940152709	4.73289192399466	4.79088381754322	4.91451733578159	4.45251417245953	4.68755940917791	4.3507912282673	4.63533523039374	-0.757997272038016	0.032125559227338	0.175196535415468
Merged-chr5-115514876-4	chr5	115514781	115514981	+	932.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	8205.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	4.04555424265868	4.11311293027837	4.2619853360356	4.01753695958825	3.66817345316426	3.90749366781828	4.16092150336642	3.94613222054468	-0.49715614163716	0.259852231566626	0.571658846876244
Merged-chr7-66387704-4	chr7	66387576	66387776	+	833.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 1 of 33)	CpG	665.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	3.94694192475047	4.16400091954547	3.73563376355754	3.75238030403785	4.16278876293563	3.91249242553365	3.66354781658734	4.16835622593789	0.2502419907002	0.59028602961785	0.820880925722276
Merged-chr3-87616241-3	chr3	87616157	87616357	+	852.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1302.0	NM_001360197	213498.0	Mm.287267	NM_001003912	ENSMUSG00000041977	Arhgef11	PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding	4.46933968129619	3.95050336175351	3.97440525783574	4.15615284103809	4.23235355981804	3.93421249663342	3.7987402858342	3.92061729577628	-0.421370207140432	0.352200424054915	0.659353818166894
Merged-chr11-50210769-3	chr11	50210680	50210880	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011018)	promoter-TSS (NM_011018)	40.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	7.00511849276803	7.5625601985506	6.57581697089586	6.22080211384506	7.70887674117909	7.98511780748474	7.29030003402202	7.27035491877561	0.878639040850696	0.050637720311223	0.23333607134282
Merged-chr18-10726254-7	chr18	10726142	10726342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_144860, exon 1 of 21)	5' UTR (NM_144860, exon 1 of 21)	617.0	NM_144860	225164.0	Mm.21500	NM_144860	ENSMUSG00000024294	Mib1	DIP-1|E430019M12Rik|Mib|mKIAA1323	mindbomb E3 ubiquitin protein ligase 1	protein-coding	5.44048009375744	5.23832176814149	6.01198147634506	5.10216841570866	5.29753130463915	5.30618994064407	5.38605352526019	5.1591396361419	-0.343591666015851	0.309777668221395	0.621966790160335
Merged-chr6-57570594-4	chr6	57570496	57570696	+	902.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10396.0	NM_025992	67138.0	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	4.34679706950176	4.17285617786308	4.47940785868256	4.77557809455026	4.54061231523285	4.42860979894704	4.61452704346977	4.63341904008506	0.162293785737367	0.67916261986011	0.868317902828816
Merged-chr5-147076639-4	chr5	147076552	147076752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181730)	promoter-TSS (NM_181730)	-80.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	7.81852633457909	7.69856727165973	7.64250156632776	8.07468036492556	8.18155299483212	8.24013176745118	8.52778853640624	8.10785000577808	0.569266605568525	0.00252357458017141	0.0279616306105262
Merged-chr16-5233565-4	chr16	5233481	5233681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145362)	promoter-TSS (NM_145362)	-40.0	NM_145362	208211.0	Mm.34581	NM_145362	ENSMUSG00000039427	Alg1	HMAT1|HMT1	asparagine-linked glycosylation 1 (beta-1,4-mannosyltransferase)	protein-coding	7.47100284976961	7.43113405420989	7.49117808448241	7.2578015982279	7.57733263575023	7.81830988236233	7.50905493956902	7.70867288560064	0.329277262310059	0.065373074288672	0.272211890417303
Merged-chr10-94035437-4	chr10	94035326	94035526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053072)	promoter-TSS (NM_053072)	316.0	NM_001304720	215008.0	Mm.124177	NM_172538	ENSMUSG00000036099	Vezt	A630071D13Rik|AI848282	vezatin, adherens junctions transmembrane protein	protein-coding	5.08851809825256	5.35324528014445	5.29077268863578	5.16104982698111	5.37945626775477	5.4029084795983	5.61242368846958	5.58927908728553	0.485866908951333	0.0855431058498266	0.318555651945422
Merged-chr2-80638847-4	chr2	80638750	80638950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027091)	promoter-TSS (NM_027091)	38.0	NM_027091	69482.0	Mm.29200	NM_027091	ENSMUSG00000026999	Nup35	2310006I24Rik|35kDa|5330402E05Rik|MP44|NO44	nucleoporin 35	protein-coding	7.18507082582857	7.28450595751647	6.68060750788195	6.63974631925662	7.30583348717481	7.14896066337916	7.22439335540254	7.13669711811351	0.324918481761477	0.153144951866063	0.437555330104179
Merged-chr8-122476142-4	chr8	122476034	122476234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153775)	promoter-TSS (NM_153775)	-9.0	NM_153775	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	7.53960556329851	7.78730276781355	7.34694857916248	7.19389501691488	7.62146804223562	7.82134635338889	7.22386413077568	7.56234597161087	0.123813102426542	0.569014807165967	0.809191633255217
Merged-chr4-103114740-4	chr4	103114626	103114826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146254)	promoter-TSS (NM_146254)	336.0	NM_001286222	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	7.24396713963086	7.11567735287027	7.45865416659021	7.08414040018234	7.37465354797768	7.81763025559495	7.52874626576774	7.34628698291877	0.402447589180562	0.0459088211996024	0.219919588468417
Merged-chr4-3986322-4	chr4	3986226	3986426	+	867.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	33337.0	NM_181989	242285.0	Mm.98096	NM_181989	ENSMUSG00000028236	Sdr16c5	Rdhe2|Scdr9	short chain dehydrogenase/reductase family 16C, member 5	protein-coding	4.94806468620885	4.75980452983513	4.94889048354005	5.38500796980615	5.04880116599897	4.52616514736928	5.17411039067057	4.67611723569618	-0.309599819613922	0.4097045577522	0.705256607406139
Merged-chr14-31164372-5	chr14	31164213	31164413	+	976.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 1 of 68)	intron (NM_138672, intron 1 of 68)	4328.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	4.02873860850759	4.22501212270653	4.2609224892236	3.78996302663419	4.39999045821017	4.25272258084113	3.90822171390475	4.25819678995852	0.372039823572701	0.392623918807728	0.692052352247535
Merged-chr7-98349345-2	chr7	98349245	98349445	+	828.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11943.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	3.61258282631765	3.24327562102118	3.41804418158025	3.15097402446924	3.20347675269908	3.16161664929231	3.35045821829239	3.51790994012867	-0.161471982418027	0.771185374224401	0.91036734532567
Merged-chr2-163418718-2	chr2	163418618	163418818	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025699, intron 1 of 3)	intron (NM_025699, intron 1 of 3)	752.0	NM_025699	66680.0	Mm.25119	NM_025699	ENSMUSG00000035399	Oser1	3230401D17Rik|AI256769|Perit1	oxidative stress responsive serine rich 1	protein-coding	3.45215989803927	3.37704570272991	3.50698175764995	3.39413382222222	3.28480088846274	3.51025113573951	3.4928385940745	3.60707273939676	0.145984511066477	0.771239569121275	0.91036734532567
Merged-chr8-119575194-4	chr8	119575102	119575302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026648)	promoter-TSS (NM_026648)	-2.0	NM_175185	72552.0	Mm.36756	NM_175185	ENSMUSG00000034189	Hsdl1	2700067E09Rik	hydroxysteroid dehydrogenase like 1	protein-coding	6.77695383574219	7.05548769003295	6.74870891352866	6.7799398967102	6.96980246745226	7.16773189254586	6.74369711664741	6.83017882685023	0.127493371367232	0.540369184805029	0.792761667540263
Merged-chr4-32303858-3	chr4	32303761	32303961	+	929.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113574.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	3.8564927666559	4.01268571535393	4.20057553290052	4.2072503198033	3.43439119033584	3.50475311329588	3.57056701498578	3.64107305632849	-1.69625453451784	0.000505457895432295	0.00777902433275142
Merged-chr3-144570342-4	chr3	144570238	144570438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053102)	promoter-TSS (NM_053102)	-89.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	8.98916253387919	9.12580384133886	8.88631700116858	9.01586886747706	9.10828900016497	8.93697768790394	9.23331766920635	8.99564267760558	0.0826821893679007	0.579115337085641	0.815233759185512
Merged-chr13-55211524-4	chr13	55211441	55211641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008739, intron 1 of 22)	CpG	1759.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	6.81330606044567	7.25672494235989	7.16986605605016	6.70313526908612	7.05881794383797	7.33521972074773	6.91805931821943	7.19753666833108	0.186462363606983	0.403218703725145	0.700666571760464
Merged-chr17-5582399-4	chr17	5582279	5582479	+	905.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	89779.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	4.35559822168361	4.33023756675166	4.5237677791903	4.71330557885676	4.31753111161313	4.57237537895436	4.42260841218591	4.26099592657228	-0.257665773554593	0.503158474822315	0.770216931103412
Merged-chr7-80776317-4	chr7	80776226	80776426	+	914.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	RSINE1|SINE|B4	27005.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	4.83916026774663	4.4203230968948	4.6174996230532	5.06240252513926	4.3620836845169	4.57577058508634	4.59613535569905	4.87018210864598	-0.352362370611464	0.363170745112534	0.668323659570053
Merged-chr12-91849262-4	chr12	91849141	91849341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011344)	promoter-TSS (NM_011344)	-84.0	NM_011344	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	9.23829751828077	9.2718825457078	9.26385060408049	9.4913409428944	9.2718634576195	9.21218407937209	9.55011468806721	9.36424360542573	0.0385454650290678	0.800649570278258	0.923103471519366
Merged-chr14-55815546-4	chr14	55815453	55815653	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-9242.0	NM_001168346	73181.0	Mm.27908	NM_023699	ENSMUSG00000023411	Nfatc4	3110041H08Rik|AW107667|AW546455|Nfat3	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4	protein-coding	5.97705125992213	6.27717222362186	5.88955909262657	6.08840158898157	5.81331114442927	5.94575774366561	5.25994698412473	5.83867740012918	-0.528375323063767	0.0562613651504182	0.248395218337775
Merged-chr14-62760115-10	chr14	62760039	62760239	+	962.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045503)	promoter-TSS (NR_045503)	-362.0	NR_045503	71000.0	Mm.399410	NR_045503	ENSMUSG00000097775	4931440J10Rik	-	RIKEN cDNA 4931440J10 gene	ncRNA	4.43469450245465	4.45771969034317	4.15414012898209	4.34907580900906	4.23786337200935	4.76311276982417	4.37272638413129	4.62724173863638	0.349465145223938	0.369784054071757	0.673977906557079
Merged-chr13-98589101-4	chr13	98589006	98589206	+	946.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	48304.0	NM_026685	68344.0	Mm.28766	NM_026685	ENSMUSG00000046082	Tmem174	0610009B10Rik|AA986094	transmembrane protein 174	protein-coding	4.45797049986382	4.53992447555681	4.67348091770237	4.54713302363943	5.24296683309	4.33304815578462	5.23641112795424	4.54595260481324	0.739447715401803	0.0671706917587704	0.27649448697071
Merged-chr17-56257572-3	chr17	56257450	56257650	+	991.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010192, exon 1 of 1)	exon (NM_010192, exon 1 of 1)	757.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	3.23498383412454	3.45647437128003	3.23538571741855	3.00032408496584	3.43428206316012	3.28523484987882	3.161453682147	3.73698391146115	0.66656353771099	0.237399991128521	0.54759776377156
Merged-chr11-62550014-4	chr11	62549925	62550125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1146.0	NM_011664	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	6.19097292911942	6.29675303183215	6.34124638006052	6.22074450896965	6.28671916017725	6.19963498000183	6.2181879916469	6.12689714434833	-0.0715946627391709	0.745941767805331	0.899850054545454
Merged-chr11-106796852-4	chr11	106796756	106796956	+	908.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166685, intron 4 of 18)	ID_B1|SINE|B4	7604.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	4.50991927420941	4.87688262751816	4.38620306139365	4.36824646688888	4.67580605563264	4.32667541321239	4.13076104330692	4.03689345500263	-0.505271336154483	0.240158326904683	0.550662936918096
Merged-chr13-59761076-3	chr13	59760973	59761173	+	720.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026921, intron 2 of 3)	intron (NM_026921, intron 2 of 3)	8716.0	NM_026921	69046.0	Mm.7884	NM_026921	ENSMUSG00000044792	Isca1	1810010A06Rik|Hbld2	iron-sulfur cluster assembly 1	protein-coding	3.73061134352835	3.78856605475363	4.03609516809068	4.36967590407391	3.71502096853999	3.85046905207116	4.06221018470754	3.89031826348637	-0.392711171343498	0.414479968898658	0.709044594374843
Merged-chr9-63133388-3	chr9	63133270	63133470	+	871.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	U6|snRNA|snRNA	13610.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	3.02890006083584	3.41187149839972	3.16659802227483	2.82665486417562	3.56128704890599	3.40704254080475	3.59051140075274	3.50815646754478	1.46264666356759	0.00988733089490893	0.078257569861973
Merged-chr15-81417144-4	chr15	81417032	81417232	+	908.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177310, intron 2 of 8)	ERVB7_2B-LTR_MM|LTR|ERVK	-8859.0	NM_021317	57755.0	Mm.440590	NM_021317	ENSMUSG00000047108	Dnajb7	4933424H20Rik|Dj5|mDj5	DnaJ heat shock protein family (Hsp40) member B7	protein-coding	4.67100195613346	4.39536045802255	4.15585850036096	3.98525774171363	4.6183897734015	4.76970815687986	4.64899795698534	4.20503486291034	0.599974727700661	0.149901606536809	0.432360854406563
Merged-chr6-47621203-4	chr6	47621097	47621297	+	970.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26167.0	NM_007971	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	5.01903570786235	5.67313215093519	5.25941596814813	5.59563380283534	4.96673110656609	5.30491062494469	4.91916963452861	5.60733524953683	-0.358723214699595	0.299673348075104	0.611914155398268
Merged-chr19-5663180-2	chr19	5663080	5663280	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164481, intron 1 of 17)	intron (NM_001164481, intron 1 of 17)	527.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	2.79560635347094	2.86799639808661	2.58235696950396	2.53883366027146	2.84322767385919	3.09198285524034	2.84974716700374	3.08784115014341	1.25257878400922	0.0490376787880362	0.22892448702357
Merged-chr8-71433116-2	chr8	71433012	71433212	+	809.75	f0_c57.idr|f1_c57bl6.idr	Intergenic	(TTAGGG)n|Simple_repeat|Simple_repeat	27100.0	NM_172756	234396.0	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	2.95754879422581	2.87161185015186	2.95786247050987	2.34197939508677	4.45824660029791	4.30502903313461	3.69702736747231	4.37563807183947	8.11924645344438	9.02409585984862e-17	1.95831133904928e-14
Merged-chr9-57439713-4	chr9	57439608	57439808	+	926.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357913)	promoter-TSS (NM_001357913)	28.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	4.6622598064692	4.42405092960195	4.51021296502938	4.24991890222321	4.69448425426471	4.36809348153524	4.31761065806019	4.62345805971905	0.145924555697343	0.702819451029719	0.880421119462815
Merged-chr6-123252974-4	chr6	123252863	123253063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9144.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	7.71984685648378	7.79683172077157	7.72914435742169	7.52866082391663	7.81135852683031	7.59106571889378	7.64285932068596	7.69974478068843	0.00501399019048779	0.976815281107414	0.991723386354742
Merged-chr3-83002395-2	chr3	83002299	83002499	+	784.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-5325.0	NM_133862	99571.0	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	3.38674651314613	3.94200209073965	3.5075806629296	3.74549637018905	3.59979766916062	3.73483234551764	3.49456917069858	3.44701961473063	-0.305631966166816	0.550223559548183	0.798490514293755
Merged-chr15-99394305-4	chr15	99394254	99394454	+	874.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171036, intron 2 of 10)	intron (NM_001171036, intron 2 of 10)	1135.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	3.95550083789092	3.61383127629148	3.85734140478802	3.50419907648596	4.02122581048225	3.87145007630899	4.07236044285873	4.13057258930308	0.852342728659251	0.0598633500040685	0.258104401343739
Merged-chr12-16900965-4	chr12	16900862	16901062	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	intron (NM_009072, intron 1 of 32)	5984.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	4.70906923305955	5.15844578635793	5.01225885291058	5.03860061418751	5.13378340869364	5.00697037195762	4.95418477924805	4.90375034293022	0.0232755764191643	0.94219608088431	0.979062797089676
Merged-chr19-7483281-4	chr19	7483190	7483390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271487)	promoter-TSS (NM_001271487)	1.0	NM_001271486	20168.0	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	8.09561815309681	7.85787928794284	7.59060009878384	7.47066317871689	7.74674171520918	8.30473025565824	7.83121871250305	7.9695100507391	0.268367658257363	0.211545982741314	0.516238052164837
Merged-chr16-70408042-4	chr16	70407961	70408161	+	907.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 3 of 15)	intron (NM_028803, intron 3 of 15)	94112.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	5.02856716820135	4.87908753548669	5.02944171750497	5.62894587666946	4.35191010313896	4.48212262754587	4.22216545558249	4.54033783454563	-1.68029995762578	1.68460034437639e-05	0.000439429191846225
Merged-chr9-118922153-4	chr9	118922069	118922269	+	801.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4367.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	3.46605975395093	3.43642112951501	3.22368333963866	3.58391037094293	3.33080864734654	3.52428700594918	3.45307860297554	3.75945465452408	0.260640919594016	0.618476307127301	0.836000920352511
Merged-chr7-101821776-4	chr7	101821661	101821861	+	890.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001122739)	TTS (NM_001122739)	3448.0	NM_008887	11859.0	Mm.5028	NM_008887	ENSMUSG00000007946	Phox2a	Arix|Phox2|Pmx2|Pmx2a|Px2a	paired-like homeobox 2a	protein-coding	4.26748335907983	4.37015409030178	4.39265038920212	4.19070245873772	4.15201845613465	4.25570790355449	3.78777653942105	4.34968949549613	-0.374420902891304	0.369681943638174	0.673878074836651
Merged-chr13-104287052-4	chr13	104286964	104287164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081020)	promoter-TSS (NM_001081020)	-771.0	NR_136938	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	6.98837128336113	6.97531269733289	7.13892537886724	7.37676330116659	7.39221791451636	7.05735422533983	7.3465930798657	7.5741320187606	0.291588985037663	0.16321016732648	0.45279789482175
Merged-chr12-108835943-4	chr12	108835859	108836059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181328)	promoter-TSS (NM_181328)	-83.0	NM_181328	214663.0	Mm.266264	NM_181328	ENSMUSG00000021265	Slc25a29	C030003J19Rik|CACL|mCACL	solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29	protein-coding	7.82818480156639	8.02775007853942	7.8063295768563	8.22576451641244	7.89593836269013	7.58388500906735	8.24140874526652	7.68692298038284	-0.14401911158059	0.48867669931903	0.761377570765248
Merged-chr15-66816655-4	chr15	66816558	66816758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	15171.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	7.5418403995381	7.6148039488307	7.6116430075805	7.41045956413551	7.24578228544728	7.58063373432072	7.23223995561128	7.09978788738588	-0.326180186769858	0.0867244459459385	0.321209032577518
Merged-chr5-109845107-4	chr5	109844989	109845189	+	964.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10947.0	NR_027964	667213.0	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213	zinc finger protein pseudogene	pseudo	5.05517001035335	4.93367041464874	5.24324214578591	4.98267191006702	5.72866703332025	6.20333093641153	6.22132347930731	6.08088160960657	1.71701844125643	1.37407001236309e-09	8.60958885651341e-08
Merged-chr2-11394844-4	chr2	11394749	11394949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040615, intron 1 of 2)	intron (NR_040615, intron 1 of 2)	3651.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	5.49482789709308	5.13517239487427	5.6241295737563	5.35240224661631	5.67348977092592	5.52780191999863	5.26480941720169	5.34914326296642	0.116822536631144	0.692711579058945	0.875066863412427
Merged-chr11-43632764-4	chr11	43632646	43632846	+	952.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31184.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	6.03726379260382	5.7122426877239	5.77931096370884	6.14049270720597	4.83512755967089	4.93864625085317	5.1389345245316	5.04897635624356	-1.69408109255577	1.44722752435475e-08	7.44846044512269e-07
Merged-chr1-33898540-4	chr1	33898439	33898639	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	9082.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	5.53817114498009	5.73032101610757	5.30699059099045	5.59911229647452	5.03509947478867	5.54487370690027	5.18240937350296	5.77552827666417	-0.259755310478868	0.412219491695762	0.707413053003174
Merged-chr10-99269900-3	chr10	99269795	99269995	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6664.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	3.85823551351331	4.03114251714971	3.54033188957479	3.7545967289797	3.59667228613154	3.71621438366388	3.69448284920159	3.70727296192816	-0.398602909986221	0.399861295659307	0.697931153338137
Merged-chr11-20743535-3	chr11	20743440	20743640	+	811.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1984.0	NM_181411	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	3.85466248656458	4.11056250312887	3.57945756546865	3.52149781993148	4.39893598360892	3.92669791352607	3.37177635024442	3.63742399742274	0.309372312008215	0.58495673084041	0.817912135003528
Merged-chr7-65704980-4	chr7	65704852	65705052	+	908.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11535.0	NM_026795	68634.0	Mm.476828	NM_026795	ENSMUSG00000078681	Tm2d3	1110025I09Rik|5930422O05Rik|Blp2	TM2 domain containing 3	protein-coding	4.69053629174822	4.60818437405097	4.36256145467856	4.03481582507377	4.65050574166821	4.82567343808574	4.5561786124595	4.492984623408	0.456348798668461	0.24928660856052	0.560328612484111
Merged-chr5-122637138-3	chr5	122637046	122637246	+	993.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6765.0	NM_001038839	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	4.99412527221941	5.01661548939025	4.51685878643259	4.99523636057815	3.91311638064447	4.20786789704221	4.27220653679224	4.01737978409877	-1.89919247115713	3.143902562631e-06	9.84513156645454e-05
Merged-chr12-76267021-2	chr12	76266921	76267121	+	745.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_138745, intron 1 of 27)	intron (NM_138745, intron 1 of 27)	11789.0	NM_138745	108156.0	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	3.48770360583376	3.49181156689024	3.5413578687478	3.03513951504297	3.32938717669065	3.54974926794527	3.23988002376067	3.73184306829525	0.265463116003411	0.634361388883462	0.845111112089176
Merged-chr4-88550373-4	chr4	88550266	88550466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7879.0	NM_206870	242517.0	Mm.377261	NM_206870	ENSMUSG00000096011	Ifna15	Gm12597|Ifnaa|MuIFN-alpha-A	interferon alpha 15	protein-coding	7.03712946020804	7.28443081626493	6.38305665469287	7.16739899078751	7.4170701070321	7.12549847911456	7.48205891572732	7.15226877049786	0.389664036428081	0.108091923306276	0.362781733733374
Merged-chr11-88068301-9	chr11	88068144	88068344	+	952.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016686)	promoter-TSS (NM_016686)	-35.0	NM_016686	22344.0	Mm.46628	NM_016686	ENSMUSG00000018377	Vezf1	AI848691|AW046909|db1	vascular endothelial zinc finger 1	protein-coding	3.90737014270014	3.84366410310763	3.74173348880095	3.3632523745321	4.24038316006067	4.08476840756255	4.55715145963308	3.90561732375815	1.37378415254872	0.00372981110399793	0.0379154848002669
Merged-chr17-45586613-4	chr17	45586519	45586719	+	775.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199113, intron 12 of 13)	B3A|SINE|B2	5774.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	3.88723454725531	4.11104718377839	3.4135946906251	3.43081452124159	3.80556107575414	3.96011409866347	3.87097062889233	4.30588589536617	0.715431662865352	0.164401646169291	0.454585687696525
Merged-chr11-46448063-7	chr11	46447917	46448117	+	913.957153	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6914.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	3.23294440320272	3.27742279248488	3.23333875136697	3.18495032822141	3.50603836495343	3.46302215633914	3.44146592830139	3.16970193698613	0.63033341868469	0.227237406848895	0.535917676090834
Merged-chr19-23141077-4	chr19	23140967	23141167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010638)	promoter-TSS (NM_010638)	-159.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	8.65053194455617	8.44694729182772	8.55058479335473	8.44120666667499	8.63750541898774	8.94812385893314	8.90244498444726	8.37032235851808	0.264594986121772	0.138805602953532	0.414381792154761
Merged-chr1-127781067-3	chr1	127780966	127781166	+	776.311096	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028399, intron 2 of 8)	MIRb|SINE|MIR	6902.0	NM_028399	72949.0	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	4.20931813410623	3.87685145025283	3.84573837951025	3.87281201334851	3.86122524900682	3.91212667816851	3.93032779544366	3.99243999369747	-0.0838161739138284	0.847415885639978	0.94229862509259
Merged-chr14-51984442-4	chr14	51984336	51984536	+	962.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198249)	promoter-TSS (NM_198249)	-397.0	NM_001145921	268739.0	Mm.9239	NM_198249	ENSMUSG00000004562	Arhgef40	E130112L23Rik|Gm669|Solo	Rho guanine nucleotide exchange factor (GEF) 40	protein-coding	4.90912449520465	5.6252349121706	5.37450145159142	5.00212283132622	5.41505285844305	5.37013311727791	5.20134643600711	4.90669657989977	-0.0218661897304931	0.949114029181945	0.981683593064559
Merged-chr6-120493015-3	chr6	120492926	120493126	+	763.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033567, exon 1 of 1)	exon (NM_033567, exon 1 of 1)	781.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	2.96235101584141	2.85987142526619	3.07427652408615	2.88093913728264	2.78000431806851	2.81089926653534	2.95151953984008	2.77364884508446	-0.512676621921358	0.402402437083135	0.699908650354484
Merged-chr10-79987156-4	chr10	79987081	79987281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	B3|SINE|B2	-1419.0	NM_007725	12798.0	Mm.157770	NM_007725	ENSMUSG00000004665	Cnn2	AA408047|AI324678|Calpo2	calponin 2	protein-coding	6.68337755758507	6.62384454692314	6.32761799404964	6.66749857322331	6.72017441247823	6.59950269108195	6.45990798899312	6.95712932398028	0.156787853375771	0.482790491349857	0.757421686487144
Merged-chr17-36992464-4	chr17	36992358	36992558	+	967.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34-int|LTR|ERV1	-2954.0	NM_001115075	240095.0	Mm.246609	NM_001115075	ENSMUSG00000024459	H2-M5	CRW2|D130003B22Rik|H-2M5	histocompatibility 2, M region locus 5	protein-coding	4.92867021526392	4.77398599207203	5.35250559431485	5.54298110334531	4.66253309874786	4.69329713216818	4.83254239709882	4.92616871758393	-0.832635043074095	0.0220842580376737	0.136856643118891
Merged-chr1-85841058-5	chr1	85840959	85841159	+	833.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355046, intron 5 of 9)	ID4|SINE|ID	47042.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	4.03949171503457	3.92494661815342	3.99059418154366	4.24166215325321	3.89024624315807	4.25850936160826	4.07006208395992	4.21819071714024	0.107656168030189	0.801437737080183	0.923373010746206
Merged-chr14-54908845-4	chr14	54908749	54908949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360406, exon 5 of 10)	exon (NM_001360406, exon 5 of 10)	4283.0	NM_001360406	59049.0	Mm.27435	NM_021551	ENSMUSG00000022199	Slc22a17	1700094C23Rik|24p3R|AU041908|AW555662|BOIT|Boct	solute carrier family 22 (organic cation transporter), member 17	protein-coding	6.22466022358723	6.01158466592694	5.55164410907295	5.75018443988873	6.03841586823981	5.70178146577529	5.9137907722209	6.55106205442538	0.29492706356661	0.327285158038175	0.638819487865721
Merged-chr6-124888154-3	chr6	124888081	124888281	+	652.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013488)	promoter-TSS (NM_013488)	19.0	NM_013488	12504.0	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	2.41998263418028	2.33440138119283	2.54003577987041	2.25142566839986	2.02611034504693	2.31972749628949	2.28099605852321	2.21617228776506	-1.13417869160741	0.156044426613474	0.44194995392012
Merged-chr16-95810610-4	chr16	95810512	95810712	+	958.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88101.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	5.192483987895	4.72660837724596	4.98160889830411	4.74602227865347	4.81806335450553	4.77821036367528	4.78228647970291	4.9105624387912	-0.177823216797049	0.599345959117041	0.826316125212269
Merged-chr8-3328025-3	chr8	3327927	3328127	+	767.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25388.0	NM_001033378	319493.0	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	3.64692092315974	3.14752583050241	3.95426390925277	3.46972889474255	3.47430802164112	3.48729062819849	3.41881399861087	3.4299512707557	-0.418310194830045	0.446960366893641	0.732624344906251
Merged-chr4-55351233-3	chr4	55351067	55351267	+	983.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009011, intron 1 of 9)	intron (NM_009011, intron 1 of 9)	1125.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	2.83744686471596	3.20582648827131	3.04733840440418	2.88306407618224	3.49123786793628	3.22252669754496	3.09944301538938	3.43425859220374	1.26613366560413	0.0289567046443327	0.163502243366568
Merged-chr17-13144976-5	chr17	13144818	13145018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13127.0	NM_199252	381058.0	Mm.390935	NM_199252	ENSMUSG00000067049	Unc93a	Unc93l|unc-93A	unc-93 homolog A (C. elegans)	protein-coding	5.18606786068322	5.87856366243781	6.07064592984429	4.95039810907958	5.58324911703872	5.79158625890167	5.58769306057646	5.58599121731578	0.0705473276497898	0.842752873620421	0.940283196304281
Merged-chr6-24647357-4	chr6	24647251	24647451	+	691.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028459, intron 1 of 10)	intron (NM_028459, intron 1 of 10)	17644.0	NM_001167745	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	3.5214998726123	3.54419813658354	3.46339135448002	3.69767015596436	3.89941525129179	3.69389411045578	3.56423633295015	3.62968335077507	0.432920734228186	0.371944117094221	0.675938343451834
Merged-chr18-69344386-4	chr18	69344289	69344489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013685)	promoter-TSS (NM_013685)	-103.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	8.01075369229896	8.16076065038943	7.81647490457864	8.07606625453511	7.81384304948617	8.02453698714578	8.3010937421356	7.94475320138837	0.0058955234728544	0.97430302623543	0.990857401763433
Merged-chr3-146946090-4	chr3	146945994	146946194	+	899.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302957, intron 18 of 21)	intron (NM_001302957, intron 18 of 21)	93727.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	4.0009069297728	4.38407884366942	4.62298484623468	4.56147919892026	4.2240895129567	4.38695801365607	3.98588203387553	4.65443242239169	-0.203031332883347	0.638852756937262	0.847409779354821
Merged-chr16-93884403-3	chr16	93884309	93884509	+	866.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028083, intron 1 of 13)	CpG	508.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	3.26660027238109	3.62936476900567	3.44892793177735	2.9057435908723	3.67687236452652	3.56629041010486	3.43524476748625	3.65558670581545	0.849714134830402	0.133811223660582	0.407275681558906
Merged-chr3-107754846-4	chr3	107754752	107754952	+	885.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007778, intron 3 of 8)	intron (NM_007778, intron 3 of 8)	5617.0	NM_001113530	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	3.6828842191617	3.79943170617719	4.13721896860581	3.83288174553024	4.14972047310978	4.26264521758243	3.72803951501167	4.00045529096805	0.492192881152383	0.278420624188078	0.59062113634986
Merged-chr3-116109527-1	chr3	116109427	116109627	+	860.5	f0_balb.idr	TTS (NM_011693)	TTS (NM_011693)	20161.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	3.58082757388647	3.43982811812107	3.76415707085261	3.72922102245949	3.44361259068268	3.22264956043137	2.95659423131648	3.17876045680018	-1.48305941376848	0.012339531622142	0.0916057072728877
Merged-chr9-61985290-4	chr9	61985165	61985365	+	687.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 2 of 7)	intron (NM_028748, intron 2 of 7)	-38466.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	4.01143329835223	3.84144846278329	3.72608481343647	3.4983123359229	3.72587862057137	3.84611522295731	3.48115135368819	3.96614758930449	-0.0199530582176651	0.967636100298852	0.988556045979739
Merged-chr11-50238678-4	chr11	50238589	50238789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008521)	promoter-TSS (NM_008521)	-157.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	6.09628105395751	6.02870025431148	6.24553500685921	5.95115656645488	5.81694232267695	6.0818891208557	5.67991715990312	5.53352816847992	-0.453399888257723	0.0813384405321426	0.309417833291006
Merged-chr12-71808248-4	chr12	71808128	71808328	+	814.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22840.0	NM_026102	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	4.41967433217816	4.48644175944073	4.00392199279434	4.05668439701579	4.26915861874721	4.2341707781681	4.27667259643429	4.3774334882302	0.0966005764202298	0.812545729568873	0.927635088294457
Merged-chr3-60589602-4	chr3	60589482	60589682	+	976.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	88403.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	5.46824792188966	5.32093499235551	5.10042338039743	5.08535439938059	4.78553153245511	4.9009435335297	4.7830051804002	5.33616434840856	-0.532628885841603	0.11281584308341	0.371403676741782
Merged-chr11-70000551-4	chr11	70000431	70000631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007888)	promoter-TSS (NM_007888)	-95.0	NM_007888	13543.0	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	6.92979261530967	6.79706482840063	6.69522013139798	6.52239685179017	7.14100734764177	6.97373076998807	6.69120406450277	6.7055990334281	0.236403465556649	0.288366933509824	0.600376446715098
Merged-chr1-152618073-4	chr1	152617960	152618160	+	860.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	7157.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	3.73283386567607	3.80276417783172	4.7111677553836	4.50067512122856	3.96691843246795	3.9158504055124	3.94036678205913	3.66927799354644	-0.990887520191158	0.0564630674940815	0.248861742162184
Merged-chr12-112867500-4	chr12	112867393	112867593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6577.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	6.92142565137297	7.41004543433073	6.47730335073021	6.14150115530314	7.04040222518467	6.80566789944358	6.6704130646243	6.08031668429963	-0.180229072597179	0.583903625226718	0.817485282428486
Merged-chr1-86528295-4	chr1	86528186	86528386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008972, intron 1 of 4)	CpG-365	1729.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	7.69540624154523	7.46044059118692	7.73649840010911	7.38965318778068	7.54320602500943	7.71008100915187	7.71432373558566	7.73903614092228	0.141053753730407	0.435262693300503	0.724494615589096
Merged-chr3-27067348-2	chr3	27067248	27067448	+	947.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4a|LINE|L1	86506.0	NM_007900	13605.0	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536	ect2 oncogene	protein-coding	2.81620630664571	2.61035645142098	2.52657026632204	2.80677230224207	2.98877892591392	2.98979876928706	2.8698072540224	3.25262440963671	1.4490936129255	0.028673308333673	0.162637454289785
Merged-chr10-60832148-3	chr10	60832036	60832236	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359273)	promoter-TSS (NM_001359273)	-555.0	NM_001359273	107449.0	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	3.55260212250647	3.66089349941041	3.81336752635953	3.98937906952888	3.4607571729554	3.41355716282495	3.53981293197111	3.94464964471392	-0.518887902231567	0.313760813003143	0.625737045999011
Merged-chr15-96594109-4	chr15	96594010	96594210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166456, intron 4 of 15)	intron (NM_001166456, intron 4 of 15)	47852.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	5.14437773023462	5.47061063419192	5.180906680874	5.61267792538271	5.67292585747238	5.32444038528017	5.84036475819191	5.59400609079471	0.407095960538663	0.177702075586522	0.473241965060196
Merged-chr7-81348453-4	chr7	81348342	81348542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357107, intron 9 of 9)	intron (NM_001357107, intron 9 of 9)	-3208.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	6.40608026410279	6.66383177198089	6.56972502019622	6.73183343274413	6.12956852015557	6.29359440950036	6.18867086065826	5.99725549382195	-0.679300100000508	0.00246275578517125	0.0274501243396029
Merged-chr9-41105313-4	chr9	41105262	41105462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	-25856.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	5.5119137422305	5.81431935332291	5.95877334372991	6.08070435972422	5.85668327455002	5.66248196085981	6.1678724649128	6.5292501228677	0.355120031033668	0.237549714270566	0.547728283751802
Merged-chr1-144240604-3	chr1	144240501	144240701	+	813.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	8503.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	4.44618066564461	4.33001195050783	3.91105034557436	3.84237911510905	3.97599049702345	3.8090016587163	3.73319053549439	3.62454052394249	-0.971937235053368	0.0461877128836533	0.220703223371748
Merged-chr14-78849213-4	chr14	78849149	78849349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173758)	promoter-TSS (NM_173758)	71.0	NM_173758	219189.0	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding	5.54304654673387	5.60289239436085	5.86302969232565	5.45547180266083	5.22574338674074	5.10309275485709	5.22745412473295	5.313293489312	-0.697670735053353	0.0160312940525015	0.109847081186273
Merged-chr3-75280603-3	chr3	75280511	75280711	+	881.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10533.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	3.79185604135122	3.51166011870572	3.29630731225026	3.55540471944096	3.37445236682105	3.13850011109592	3.2846668176733	3.23273654962955	-1.00629143575392	0.067023087100908	0.276143150914964
Merged-chr8-11187776-4	chr8	11187696	11187896	+	871.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-125009.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	4.36497076538757	4.14054450175998	4.58370767851207	4.34259643798908	3.82315388395955	4.12461029256166	3.93056180273126	4.09917884472216	-0.96224584755975	0.0228804594028133	0.139866731349437
Merged-chr3-152404983-3	chr3	152404888	152405088	+	703.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287139, intron 1 of 13)	intron (NM_001287139, intron 1 of 13)	8304.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	3.69462774858154	3.4627782361916	3.84407207234187	3.88440777753486	3.93787690355272	3.75851643407905	3.62732592839544	3.52495916744585	-0.0276062330930672	0.955243174392617	0.984075265351039
Merged-chr5-135935476-2	chr5	135935385	135935585	+	792.5	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_018871)	promoter-TSS (NM_018871)	-844.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	5.03999263914065	5.62422148581364	4.86338128013894	4.85859078183554	4.75320346299528	5.11230608559428	4.80194189420773	4.78180909542224	-0.526400575272089	0.152306465467201	0.436288782778331
Merged-chr2-167715233-4	chr2	167715120	167715320	+	950.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24043.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	5.35005250043277	4.88314920774459	5.26810364921509	4.93121543146478	4.77037042424349	4.74671582332447	5.09122293074734	5.47396550552938	-0.118397368907697	0.741668081941349	0.898344123279219
Merged-chr5-9100643-4	chr5	9100546	9100746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081029)	promoter-TSS (NM_001081029)	-91.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	7.38237022218925	7.36873228183031	7.41287191579629	7.65306657662769	7.41501437519961	6.99975629355527	7.48627488804188	7.01521307065412	-0.284266195509038	0.168792048231734	0.461224968370631
Merged-chr5-144964102-4	chr5	144963997	144964197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038627, intron 1 of 17)	intron (NM_001038627, intron 1 of 17)	1733.0	NM_001038627	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	5.81687704434706	6.06438737842316	6.02163567396257	5.92945578109519	5.79982234794753	5.91844577335434	6.07130934846711	5.93084626736604	-0.0522586570746072	0.829610002490158	0.934614452965195
Merged-chr9-95783849-4	chr9	95783754	95783954	+	898.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033210, intron 5 of 15)	intron (NM_001033210, intron 5 of 15)	-33496.0	NM_011643	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	4.76267582894955	4.2445181232759	4.34421166049497	5.01800519809216	4.30627931294902	4.047700768221	4.32487864451423	4.29563046371358	-0.915494735373108	0.0331417755185914	0.178793272672262
Merged-chr11-76529887-4	chr11	76529782	76529982	+	975.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198894, intron 1 of 22)	intron (NM_198894, intron 1 of 22)	-20463.0	NM_198018	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	5.87972777769995	5.5816795787801	5.90169088258993	5.80393253608538	5.48654328313987	5.44719835741195	5.06062316637565	5.62005330702429	-0.634013248310527	0.0258463218615596	0.151854341212047
Merged-chr14-51091612-4	chr14	51091500	51091700	+	976.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021472, intron 1 of 1)	intron (NM_021472, intron 1 of 1)	523.0	NM_021472	58809.0	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	4.93818864809028	5.29874219042767	4.90180973146418	5.0391786633199	4.78753586811026	5.18431811444812	4.98609191244958	5.28554083806682	0.0147075897541603	0.96435991535768	0.987309283922085
Merged-chr17-24583858-3	chr17	24583770	24583970	+	811.894409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013630, intron 26 of 45)	Lx5c|LINE|L1	33920.0	NM_013630	18763.0	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystin 1, transient receptor poteintial channel interacting	protein-coding	3.66772996228026	3.56277625154358	3.6209030004866	3.47734351125438	3.29899559749919	3.33587725670848	3.3968222105188	3.40763754557202	-0.767623492686551	0.13097112793749	0.402851817789318
Merged-chr8-77467026-2	chr8	77466926	77467126	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-50030.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	2.83641078507216	2.68527566323466	2.83678762370028	2.74361060949165	2.76514645027397	2.60898532338829	2.93595810172545	2.42829929820273	-0.357169479422968	0.603663343967683	0.828237883542006
Merged-chr8-10026398-3	chr8	10026295	10026495	+	736.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033622, intron 4 of 6)	L1M4|LINE|L1	19762.0	NM_033622	24099.0	Mm.28835	NM_033622	ENSMUSG00000031497	Tnfsf13b	BAFF|BLyS|D8Ertd387e|TALL-1|TALL1|THANK|TNFSF20|Tnlg7a|zTNF4	tumor necrosis factor (ligand) superfamily, member 13b	protein-coding	2.74330652956605	2.97074428434179	3.19228117990597	2.97369007795393	2.80617194061418	3.06486415636227	3.37659481264708	3.13504353080876	0.524983403712927	0.400476703463505	0.698288454162677
Merged-chr8-90977062-4	chr8	90976954	90977154	+	961.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001310530, exon 4 of 38)	exon (NM_001310530, exon 4 of 38)	44805.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	4.46791543183135	4.08159970145643	4.50766261556534	4.55725174015982	3.97620220927282	4.06188429487232	4.62985159156168	4.46571200854791	-0.26544731087449	0.539356892125115	0.79215032691412
Merged-chr11-118254359-4	chr11	118254298	118254498	+	911.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5806.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	4.31405638601338	3.85227909345544	4.10509186768403	3.73579401101415	4.11453619802398	3.7978577802869	4.04091828689924	4.31189029105822	0.194006256946191	0.671961685662732	0.864973249851483
Merged-chr11-82041890-4	chr11	82041795	82041995	+	987.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-3817.0	NM_013654	20306.0	Mm.341574	NM_013654	ENSMUSG00000035373	Ccl7	MCP-3|Scya7|fic|marc|mcp3	chemokine (C-C motif) ligand 7	protein-coding	4.92277006544111	4.53979785285323	4.58464076930246	4.79220990463103	4.99511077037427	5.02688561030035	4.42922376761303	4.78076064458442	0.230594373577643	0.525247168480631	0.783229855070132
Merged-chr2-73462546-3	chr2	73462457	73462657	+	973.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-8668.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	3.77950370077436	3.64107990468939	3.67049914837838	3.94036938110645	3.94933244337345	3.89917300115772	3.91168964757166	3.92626807127775	0.411621963756405	0.359162029756078	0.665108986549624
Merged-chr7-92903816-4	chr7	92903728	92903928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 2 of 8)	intron (NM_028243, intron 2 of 8)	28575.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	5.35461651526173	5.38541249275013	5.15932978989579	5.30831243125511	5.32437980851975	5.87023412744643	5.47107625493285	5.59875539852838	0.462352010081115	0.111043648198474	0.368157614938712
Merged-chr1-72413470-4	chr1	72413375	72413575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106054.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	7.57363885775571	7.237844464841	7.65253540648334	7.65681057815495	7.6914111461588	7.48603113090733	7.86363994338141	7.72819533835982	0.206192191877665	0.276974990703192	0.589064266262177
Merged-chr9-59548998-4	chr9	59548891	59549091	+	886.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	9451.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	3.87234373168483	3.9535872308014	3.97736365124865	4.1919000918142	4.23314984498333	3.93747635479017	4.22825579203477	4.07159725137408	0.285206987941789	0.503950295582023	0.770592637321386
Merged-chr3-137919108-3	chr3	137919013	137919213	+	965.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019920, intron 2 of 6)	intron (NM_019920, intron 2 of 6)	558.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	3.74678014191772	3.95303341906035	3.74731583944336	3.55700230301195	3.67064627107128	3.64245062816902	3.62729536803131	3.79490484218369	-0.197691752644274	0.675812891388718	0.866929785285144
Merged-chr13-5922902-4	chr13	5922789	5922989	+	878.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61400.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	4.12322016915175	4.16136430110284	3.8570307915096	4.34420204867377	4.54207904685947	4.19876801452517	4.28424781578314	4.16871694577583	0.409604987545632	0.332998781730153	0.643932741578704
Merged-chr3-90051889-4	chr3	90051791	90051991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027500)	promoter-TSS (NM_027500)	255.0	NM_001287087	99650.0	Mm.300083	NM_025762	ENSMUSG00000027942	4933434E20Rik	5730552F22Rik|AI462154|NICE-3|NS5ATP4	RIKEN cDNA 4933434E20 gene	protein-coding	5.63581701360067	5.72175660670378	5.26530963610806	5.70036858577453	5.69632175842474	5.98677546158181	5.91511593394617	6.0992212385242	0.523532610255096	0.0546315073490787	0.244047928702865
Merged-chr19-9939031-4	chr19	9938897	9939097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39464.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	7.62255930744929	7.67490212504848	7.8341162677986	7.49890697247184	7.67698187765818	7.50630668814184	7.37505905507149	7.32363028129478	-0.227109047228946	0.223060912704396	0.531132387537557
Merged-chr10-130311926-5	chr10	130311876	130312076	+	783.049988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10876.0	NM_183264	67596.0	Mm.131264	NM_183264	ENSMUSG00000034833	Tespa1	5830405N20Rik|A430001F24Rik|AI450549	thymocyte expressed, positive selection associated 1	protein-coding	3.13872770413529	3.02516585178152	3.08195161701502	3.16115324570977	2.73150283550486	3.19259677410196	2.9495155979878	3.0205850311809	-0.538498500295371	0.372758634387473	0.676472052344753
Merged-chr11-69368942-6	chr11	69368859	69369059	+	972.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146019, intron 1 of 39)	CpG	467.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	4.37394432574492	3.8644440520573	3.79888158943435	3.89709173849229	4.23475973215092	4.33695510509752	4.10037812435942	4.40975834767964	0.708311378457616	0.0989962458975904	0.344957839464659
Merged-chr13-8842427-4	chr13	8842342	8842542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039388, intron 9 of 13)	intron (NM_001039388, intron 9 of 13)	28602.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	5.36649428408466	5.34180030805043	5.65681949027884	6.25498038715803	5.84447699869227	5.301771322975	6.00321794478414	5.62666754209188	-0.0148357064845295	0.965941018151915	0.988022131369328
Merged-chr1-121431611-4	chr1	121431549	121431749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029955, intron 1 of 23)	intron (NM_029955, intron 1 of 23)	582.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	6.06399513909647	6.71774569048004	6.40909826111076	5.75707185534955	6.27731734688906	6.1286038730266	6.29011175228575	6.20575651207976	-0.0757537309675298	0.790645830928608	0.918840742585233
Merged-chr9-53247560-3	chr9	53247448	53247648	+	922.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029936, intron 1 of 17)	intron (NM_029936, intron 1 of 17)	564.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	3.82326109172788	3.45445505121432	3.36932751951834	3.63311907691586	3.37991157622044	3.60079400560921	3.29623884264666	3.42678554430126	-0.52034405271506	0.315871225659438	0.627754059054883
Merged-chr11-5491223-4	chr11	5491114	5491314	+	888.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29427.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	4.13298974983608	4.1252473251828	4.18005158064483	4.86426696172181	3.80742587973689	3.67119421178043	4.16141748684108	4.26542773354384	-0.971410618296958	0.0497826603654713	0.231041271575529
Merged-chr2-104685597-4	chr2	104685513	104685713	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177190, intron 7 of 9)	intron (NM_177190, intron 7 of 9)	26549.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	3.93583120455668	4.21731427489479	3.70781594044957	4.04079512397104	4.3412141624875	4.00453749909203	4.3182281045303	4.03499692670896	0.503684876444148	0.249032509004811	0.560207151982062
Merged-chr11-73324200-4	chr11	73324122	73324322	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023113, intron 1 of 5)	intron (NM_023113, intron 1 of 5)	415.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	5.26315631893065	5.45523589487183	5.49076674182474	5.39672252624805	5.30012247699207	5.00646030264033	5.07401371196339	5.43399219245667	-0.331438649645802	0.262707721437067	0.574496079884757
Merged-chr19-21895731-4	chr19	21895625	21895825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	117385.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	6.71872807222668	6.6003642021565	7.23857603058983	7.15867253570664	6.63578035556964	6.41433021299394	6.83950652212082	6.71512368898039	-0.427719538797352	0.0743356412415035	0.293854082413028
Merged-chr1-34463029-4	chr1	34462937	34463137	+	985.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 2 of 14)	intron (NM_011206, intron 2 of 14)	3291.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	5.0206975852823	5.02237864374357	4.7156932578824	4.49255581771651	5.05227206466605	5.16186467742279	5.44599426821363	5.14731542248828	0.762622986447909	0.0245816993591205	0.146732843796412
Merged-chr7-29008383-3	chr7	29008300	29008500	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009109, exon 101 of 106)	exon (NM_009109, exon 101 of 106)	25546.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	4.89394092227135	5.13052565784072	5.36984374017848	5.3534645578206	4.07312826987638	4.14152516576029	4.47997346214714	4.13186003230608	-2.22086244941138	1.42305840695609e-08	7.3366638566289e-07
Merged-chr9-110533025-4	chr9	110532900	110533100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081340, intron 1 of 20)	CpG	403.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	4.99253622156858	5.15553464451452	5.35146817731519	5.02580942571757	5.36812348362952	5.09526226912396	5.32467621433575	5.57976485872332	0.413925254644982	0.171778221342303	0.465089336091783
Merged-chr5-43787676-3	chr5	43787578	43787778	+	741.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5529.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	4.22094432892314	4.17364050191052	4.22163827076259	3.77124964334479	3.55427573874313	4.07863638735674	3.66668891401299	3.90168504181063	-0.81781983101448	0.0894790977797662	0.326600312848878
Merged-chr10-94474388-4	chr10	94474280	94474480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-40477.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	7.70953966141659	7.67599957638919	7.94157432394033	8.06133673877179	7.44865837905397	7.59520242396182	7.73680326746974	7.80754393074982	-0.28058369592344	0.135971855113013	0.410377403116059
Merged-chr2-73003219-4	chr2	73003106	73003306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22760.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	5.79455385454371	5.45640952411626	5.86159733379368	5.99658347908504	5.51561081450063	5.38105818879254	5.27850383883671	5.5424863509927	-0.618056099698245	0.0295866732577759	0.165692353722678
Merged-chr6-145866164-4	chr6	145866089	145866289	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024469)	promoter-TSS (NM_024469)	-769.0	NM_001271768	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	4.71083015910479	5.20604453830432	5.73497925498083	5.38589261669161	4.17493955580874	4.46695512596305	4.25780493850152	4.82714941674607	-1.77471865451098	1.92985369573682e-05	0.000492701062442078
Merged-chr1-92473831-4	chr1	92473735	92473935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024197)	promoter-TSS (NM_024197)	-77.0	NM_024197	67273.0	Mm.248778	NM_024197	ENSMUSG00000026260	Ndufa10	2900053E13Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10	protein-coding	7.17774605428409	7.77153927649274	7.37089972753507	7.38245086985446	7.82153490598219	7.97070800721024	7.4150950494361	7.935854246806	0.469986859142429	0.0271144597161812	0.156679666190783
Merged-chr15-36608034-4	chr15	36607949	36608149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008774, intron 1 of 14)	intron (NM_008774, intron 1 of 14)	924.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	7.04858063128552	7.1785429507131	7.64825218534596	7.48564510895275	7.10551344453534	7.2147623515646	7.53752412965935	7.24522329403724	-0.112038712409684	0.603650309664168	0.828235964986811
Merged-chr2-90576434-4	chr2	90576310	90576510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	4237.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.02335257928637	6.02093711594105	6.23595995100406	6.15346358718005	5.85809414803839	5.9717759585535	5.74068638085539	5.60219001466992	-0.496206492327217	0.0443246366456132	0.21472794113475
Merged-chr12-4450671-2	chr12	4450571	4450771	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010881, intron 1 of 22)	MLTR14|LTR|ERV1	26511.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	2.88637534419558	3.03396350045479	3.01991161963714	3.29763815549739	3.11471708644874	3.19101110533802	3.28931499111396	3.08030298127496	0.338590602792064	0.566081022282324	0.807783748011785
Merged-chr6-125444066-2	chr6	125443990	125444190	+	653.333374	f0_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	50670.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	3.33530025917565	3.72250971868315	3.57661700031982	3.07919915532591	2.95918243536849	2.85625215739538	2.89147345186338	2.74438522552305	-2.50625300465954	0.000398393835715099	0.00642148433703918
Merged-chr4-135987254-4	chr4	135987158	135987358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025411)	promoter-TSS (NM_025411)	-14.0	NM_025411	66193.0	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	7.03348384295286	7.19114054517038	6.69680170198169	6.99675268682153	7.30515228158925	7.04041852653656	7.1925566494608	7.1361586065686	0.250276417976441	0.212301960999789	0.51721399466078
Merged-chr13-41606965-4	chr13	41606842	41607042	+	981.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163572, intron 1 of 2)	intron (NM_001163572, intron 1 of 2)	726.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	4.98322953824356	4.95562819158428	5.05736043846619	5.52013034001046	5.04510261980041	4.96308304108931	5.68140489203483	5.54893712691464	0.317260830927924	0.377337297156379	0.679996239665145
Merged-chr11-108244420-4	chr11	108244316	108244516	+	832.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	99472.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	3.97282403621266	4.00767780561508	3.8762353906846	3.89365641123612	4.01331686150963	3.5098933940901	3.95626607017134	4.01688103679366	-0.110112605724389	0.809336443882248	0.926399566100386
Merged-chr16-92861818-4	chr16	92861712	92861912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-35738.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	6.86203196880607	7.20982436736258	7.09939867643539	7.24840188603293	7.0993310286543	7.40118026564318	7.19913578674437	7.27246871593406	0.160635790352255	0.412775969193397	0.707787832411092
Merged-chr3-136324858-2	chr3	136324758	136324958	+	907.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 1 of 16)	L1_Mus1|LINE|L1	1208.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	3.54974383524389	3.06872456979957	3.12088719677778	2.56111607445455	3.27667781059629	3.35879535030777	3.1093584736273	3.29701328881222	0.497062011533628	0.458824791130359	0.741615730170609
Merged-chr17-26676446-4	chr17	26676407	26676607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025272, exon 1 of 4)	exon (NM_025272, exon 1 of 4)	111.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	5.69351087857375	5.95911549069795	6.11505178305039	5.48636942708408	5.90022506509549	5.79052608227276	5.66572636517153	6.01301013418038	0.0497783894054786	0.858989136084706	0.946576014812915
Merged-chr15-82338049-4	chr15	82337947	82338147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355546, intron 2 of 8)	intron (NM_001355546, intron 2 of 8)	779.0	NM_001355546	17939.0	Mm.20325	NM_008669	ENSMUSG00000022453	Naga	-	N-acetyl galactosaminidase, alpha	protein-coding	5.75719728942538	5.57219505292745	5.3141437994845	5.66149721199678	5.90327372472963	5.6170078726628	5.41345053759207	5.75411513995326	0.171998461536687	0.540846785325878	0.792982745230616
Merged-chr9-66360455-4	chr9	66360360	66360560	+	982.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145617, intron 1 of 77)	intron (NM_145617, intron 1 of 77)	10010.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	4.96216635687764	5.19952567981821	4.67402556078843	5.10242083489978	4.9087752385244	4.67984397019248	4.33612747171687	4.29943936924996	-0.851008156337317	0.0283247234865915	0.161277137273186
Merged-chr1-165769262-4	chr1	165769147	165769347	+	920.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 2 of 4)	intron (NR_149310, intron 2 of 4)	5489.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	3.66199986740985	4.51107490097377	3.83299513577735	3.72339456107227	3.97691524496882	4.00799817950642	3.76360287787547	3.88301494355562	-0.188200261931836	0.707215204030644	0.882410486225344
Merged-chr17-86732269-4	chr17	86732175	86732375	+	990.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21589.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	6.04026273114209	5.75388184814297	5.85607655940124	6.04683997612962	5.46641399204802	5.27198936043033	5.50070610069302	5.60793121528302	-0.780576020733928	0.00344869592489535	0.0356276817471881
Merged-chr19-21943614-4	chr19	21943527	21943727	+	827.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	165287.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	3.86726021555646	3.72078189573281	3.91749119124984	3.76716946797182	3.93585801290909	3.93642844585752	3.99368923879436	4.0089320437756	0.434529730280807	0.309194238919076	0.621610405363504
Merged-chr10-52422615-2	chr10	52422515	52422715	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	5068.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	2.71225730739982	2.75764718067975	2.71262211329003	2.75620276416034	2.47162955762575	2.32411988535702	2.37801859497824	2.52413162176655	-1.76067013362781	0.0183951316909873	0.121134894868423
Merged-chr5-32194494-4	chr5	32194389	32194589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER121|DNA|TcMar?	-38219.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	5.9904296813255	5.94515831743547	6.1325839742447	5.52692055928254	5.94302366506375	6.05543579355604	5.82668950941275	5.94382999173332	0.0745887070592663	0.781228085010663	0.914845168270305
Merged-chr17-5081075-3	chr17	5080974	5081174	+	846.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 2 of 19)	intron (NM_001085355, intron 2 of 19)	86000.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	4.09963107413931	3.93364531118626	4.22917802089816	4.21350512472417	3.70938338746436	3.85704794692278	4.12609775297944	4.05173130937147	-0.507830707872664	0.247234695515878	0.558256460112447
Merged-chr15-41639057-1	chr15	41638957	41639157	+	612.333313	f0_balb.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	-149938.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	3.48554690703808	3.35223468307246	3.53616104826977	3.3262341697616	3.25079886110414	3.02767964330202	3.41998280587698	3.43192768140503	-0.463568464008605	0.394269494079156	0.693393331827644
Merged-chr15-88760736-3	chr15	88760622	88760822	+	876.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181412, intron 2 of 2)	B2_Mm1a|SINE|B2	9011.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	3.39124852737865	2.91358424322913	3.27046401332549	2.98804967699049	3.62954402572717	3.38802030332474	3.31948086103254	4.05232170097809	1.65797012255978	0.00453826206534762	0.0441960535708549
Merged-chr2-101733008-4	chr2	101732903	101733103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 7 of 8)	MTEb|LTR|ERVL-MaLR	54583.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	7.80966642771354	7.87110005815407	8.03275573149786	8.02810499611393	8.01628393803879	7.74784181172475	8.13049253934747	8.07873942885521	0.0787303454285369	0.646795258948169	0.851401409677112
Merged-chr19-24984615-3	chr19	24984482	24984682	+	923.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14947.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	3.57030524260071	3.43238634396604	3.76268890372748	3.63050273974398	2.97495459598931	3.26005299663067	3.39248564288886	3.71502712544346	-0.82820219727481	0.151733515913695	0.435423315966009
Merged-chr8-46078645-3	chr8	46078531	46078731	+	825.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207213, intron 5 of 17)	intron (NM_207213, intron 5 of 17)	45515.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	3.53670227662701	3.20805081900532	3.63506936959202	3.76732078432156	3.39196196742976	3.29996715438063	3.17892308464342	3.37287115354063	-0.846859577603735	0.124004206829626	0.390777679104173
Merged-chr3-107099761-4	chr3	107099678	107099878	+	783.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-1789.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	3.89087502831838	3.93040450624031	4.04528106670234	4.18489432835997	4.30947776980562	4.21662954324526	4.02820682881645	4.09029214238425	0.36005140651525	0.391171270197139	0.691034940965009
Merged-chr7-92740696-4	chr7	92740598	92740798	+	777.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015510)	TTS (NR_015510)	761.0	NR_015510	666737.0	Mm.473620	NR_015510	ENSMUSG00000074024	4632427E13Rik	AU015482	RIKEN cDNA 4632427E13 gene	ncRNA	4.25658851596491	4.43749712495238	3.91950340166327	3.85719801425304	3.97519098326814	4.09749452729016	4.19506910970804	4.33655730902831	0.0557275343506254	0.899587113820763	0.962665732160386
Merged-chr2-27743615-2	chr2	27743515	27743715	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 4 of 9)	intron (NM_001290481, intron 4 of 9)	33032.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	2.57063455240845	2.42479735809862	2.570991535616	2.43105458909489	2.25475784305967	2.25985526646948	2.37421251363575	2.38056412708604	-1.09668950336366	0.138412274995119	0.413889099884774
Merged-chr1-82796294-4	chr1	82796186	82796386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27830.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	5.57750362684023	5.34179471735013	5.47036277461589	5.34762063977144	5.31836771049318	5.43330401186372	5.71845624063252	5.74370451135487	0.225286306409555	0.427478723225151	0.718603162473499
Merged-chr4-105263814-4	chr4	105263717	105263917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106470.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	8.60821552787336	8.698530539916	8.66425688354571	8.64025843659368	8.87518827838294	8.98921169034061	8.79154565656543	8.84514932855214	0.279411285334136	0.0479405726515523	0.22589448038957
Merged-chr4-135679584-3	chr4	135679494	135679694	+	939.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6863.0	NM_174851	242700.0	Mm.259623	NM_174851	ENSMUSG00000062157	Ifnlr1	CRF2-12|Il28ra	interferon lambda receptor 1	protein-coding	3.84516726012532	4.13429133596406	4.2145423529346	3.60362005163535	4.40375192695794	3.59884811463782	3.72016172028571	3.99427686558683	0.0281033644768144	0.956965088726297	0.984757116793997
Merged-chr5-27185114-4	chr5	27185012	27185212	+	936.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207282, intron 1 of 25)	intron (NM_207282, intron 1 of 25)	-76823.0	NM_001136060	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	5.03377172986072	4.52367401018757	5.06393828113786	5.28459545988161	4.06873795589309	4.13082160615781	4.71199353852243	4.52891714797173	-1.359916543537	0.00117643743569457	0.0153281420895669
Merged-chr9-64023049-4	chr9	64022948	64023148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008542)	promoter-TSS (NM_008542)	-989.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	7.64756934435375	7.68898730236907	7.60554024005815	7.46636645510596	7.65306983755703	7.90051465719672	7.80018765158857	7.82550977525768	0.255695599677437	0.133572670328273	0.406901236270076
Merged-chr13-116972420-4	chr13	116972309	116972509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	PB1D9|SINE|Alu	53107.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	6.21284560056576	6.44698946766089	6.12958291847084	6.55857741075343	6.74233532752616	6.09683103885971	6.62272819949647	6.48339193165582	0.228783787667787	0.360748042796631	0.665966878601068
Merged-chr16-24027557-3	chr16	24027428	24027628	+	711.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38676.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	3.30979513051882	3.49308196644412	2.9939044502458	2.9989040911865	3.21779849756932	3.36633214509756	3.45365034286589	3.2510078418384	0.41033772932732	0.470401255080468	0.74912052388072
Merged-chr1-52119898-1	chr1	52119798	52119998	+	766.0	f0_balb.idr	intron (NM_001205313, intron 1 of 24)	intron (NM_001205313, intron 1 of 24)	276.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	3.93601924715449	3.77360239921992	3.69703620454768	3.7197789134418	3.67223701429445	3.58220217700929	3.6291583909362	3.74653223737543	-0.367183926736939	0.428077168600411	0.719151653480075
Merged-chr14-54494385-4	chr14	54494276	54494476	+	784.404175	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18276.0	NM_080726	140743.0	Mm.274727	NM_080726	ENSMUSG00000022176	Rem2	AW411893	rad and gem related GTP binding protein 2	protein-coding	4.50046634488633	4.26799332077782	4.07458266455945	3.9622881177707	4.38421320280403	4.03686772739906	4.00656041138219	4.46150803911437	0.0917637996714827	0.832329009753639	0.935811375896479
Merged-chr9-124125763-4	chr9	124125646	124125846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009917, exon 2 of 2)	3' UTR (NM_009917, exon 2 of 2)	4203.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	7.05545816237578	6.89061484981433	6.96893078285303	7.01073281732176	7.08756279074899	7.00937670516037	7.36663781083581	7.1336827996295	0.236793233843761	0.215742118585261	0.522006394984088
Merged-chr17-47511272-4	chr17	47511163	47511363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	6212.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	7.84123305594758	8.14108907189155	7.85003659336691	7.73208410877421	7.97854586973327	8.02748898890796	7.68680398472333	7.71086104541642	-0.0455151124280433	0.806386149644782	0.925408958667777
Merged-chr9-46192841-4	chr9	46192737	46192937	+	792.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 6 of 24)	intron (NM_027498, intron 6 of 24)	-35793.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	3.78164756328838	4.08850500972078	3.72600595331166	3.72810520023409	4.3033256499806	3.90229902115272	3.92077078429372	3.93513487023095	0.551802514293984	0.222553917773502	0.530621200281373
Merged-chr10-45277198-4	chr10	45277086	45277286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12119.0	NM_024286	78977.0	Mm.24748	NM_024286	ENSMUSG00000019848	Popdc3	AA682104|Pop3	popeye domain containing 3	protein-coding	5.35236925255172	6.12361675181573	5.98311318483047	5.85276688046564	5.90834563045154	5.56677257328981	5.88924346858948	5.67670412988304	-0.141649760809196	0.62211558293595	0.838189761078894
Merged-chr16-24777271-4	chr16	24777148	24777348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 8 of 12)	intron (NM_178665, intron 8 of 12)	55393.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	6.39396169744202	6.76001566584412	6.43108202798137	6.54016841882716	6.80650808432775	6.41787835504671	6.53205922904998	6.49548707061388	0.0574284177518029	0.798027294821312	0.921928567316738
Merged-chr11-94474430-4	chr11	94474329	94474529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001112813)	promoter-TSS (NM_001112813)	-231.0	NM_001112813	12291.0	Mm.29585	NM_009783	ENSMUSG00000020866	Cacna1g	Cav3.1d|[a]1G|a1G|alpha-1G|mKIAA1123	calcium channel, voltage-dependent, T type, alpha 1G subunit	protein-coding	4.96057942959431	5.46676619602819	5.21261185445537	5.46207561385856	5.32500901463817	5.28768269227591	5.5499920164725	5.3623297375737	0.134463366918455	0.656891784394645	0.856918486940591
Merged-chr10-44729178-4	chr10	44729075	44729275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_C_Mam|LINE|RTE-X	-270427.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.06487840841547	6.33485865128587	6.10778720770166	5.84356918297861	6.48876861717536	6.17697823794266	6.21210105293502	5.69476236784372	0.142967019547998	0.604727290465115	0.828509474255204
Merged-chr10-75859633-3	chr10	75859527	75859727	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010798, intron 2 of 2)	intron (NM_010798, intron 2 of 2)	623.0	NM_010798	17319.0	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding	4.67148817426786	5.10313135023529	5.27766095637262	4.69911696336295	4.87932392355382	4.62190693600965	5.05012561458336	5.07170734480105	-0.0696160210754569	0.84637296724272	0.941927981530162
Merged-chr10-43849717-4	chr10	43849622	43849822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23815.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	5.37669048808555	5.46440773491258	5.31710966466325	5.27081543484517	5.55526109731872	5.29469838447437	5.32122446201329	5.73108268817414	0.24481144752241	0.39027117710863	0.690455897283702
Merged-chr13-85489901-4	chr13	85489795	85489995	+	954.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-200409.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	4.91162883870873	4.95368879529703	5.19025801869157	5.47052769346093	5.22061000257971	5.26740761360606	4.76872700842899	5.41415512896924	0.0365551163265049	0.915660796777113	0.968763998229684
Merged-chr13-45101956-4	chr13	45101826	45102026	+	959.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99830.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	5.36661170857696	5.80622062696661	4.84749881825637	5.04865643655575	5.631039486867	5.32703855638642	5.2826336853915	4.84435190782817	-0.0173248122573848	0.963164672299682	0.986830639820634
Merged-chr7-13038146-4	chr7	13038026	13038226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243968)	promoter-TSS (NM_001243968)	-148.0	NM_145578	22192.0	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	7.48556335703694	7.5942448955734	7.79505435167861	7.18518178182716	7.12406139445932	7.64537366869983	7.19647693395047	7.23882059234229	-0.28446784804152	0.195105657934145	0.495879585259548
Merged-chr11-88242010-2	chr11	88241954	88242154	+	987.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	37666.0	NM_001291271	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	4.21905623209217	4.09406245277019	4.52737532276147	4.34631689809255	3.29870849766522	3.26336278798893	3.29342757837063	3.44695917151132	-3.39724455257645	1.91895258131535e-08	9.66660479727141e-07
Merged-chr12-85338994-1	chr12	85338894	85339094	+	1000.0	f0_balb.idr	intron (NM_145138, intron 1 of 21)	CpG	368.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	5.1821434393187	5.64244895616267	5.88844006797936	5.06033451541055	5.25572518313643	5.48667394351729	4.97850449457495	5.21273066228759	-0.415564155692508	0.229118448736698	0.538010661957944
Merged-chr11-34827129-4	chr11	34827030	34827230	+	989.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027411, intron 2 of 11)	Tigger7|DNA|TcMar-Tigger	6511.0	NM_027411	70385.0	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	5.37792479424801	5.2582096304143	5.01258320488201	5.28307604856706	5.39135090053522	5.7134354375857	5.32293208701011	5.48579311857073	0.421141521526988	0.147159561968156	0.427939308793208
Merged-chr11-11564491-3	chr11	11564383	11564583	+	667.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63355.0	NM_001305143	102631730.0	Mm.159430	NM_001305143	ENSMUSG00000062511	4930512M02Rik	-	RIKEN cDNA 4930512M02 gene	protein-coding	3.33663643978122	3.31143063770703	3.44270435133851	3.39667093930213	3.38973566488646	3.20473664097439	3.01922513791509	3.27909252936958	-0.499469155870069	0.361374119138998	0.666690384795883
Merged-chr5-100039007-4	chr5	100038913	100039113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026421)	promoter-TSS (NM_026421)	209.0	NM_016690	50926.0	Mm.389579	NM_016690	ENSMUSG00000029328	Hnrnpdl	AA407431|AA959857|D5Ertd650e|D5Wsu145e|Hnrnpdl1|Hnrpdl|JKTBP|hnRNP DL|hnRNP-DL	heterogeneous nuclear ribonucleoprotein D-like	protein-coding	7.88890153098287	8.17170006352348	8.00324936446903	7.90929562037635	8.18051759261696	8.08230446818408	7.98502258199839	7.85507238355385	0.049859684782541	0.770098664742109	0.910046865633101
Merged-chr17-33890788-4	chr17	33890701	33890901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195298)	promoter-TSS (NM_001195298)	-168.0	NM_001195298	100502766.0	Mm.335713	NM_001195298	ENSMUSG00000079553	Kifc1	100042970|Gm4137|HSET|KNSL2|Kifc5a|Knsl2a|Tctex-7|Tctex-7A|Tctex7|Tctex7a	kinesin family member C1	protein-coding	8.67505802940241	8.79584637046601	8.2625785447924	7.95519192403539	8.91503022397459	9.09539365240749	8.71258239200843	8.63562446823033	0.490373617731801	0.0251786913105847	0.149157547947258
Merged-chr13-119713593-1	chr13	119713493	119713693	+	1000.0	f0_balb.idr	intron (NM_175538, intron 3 of 3)	intron (NM_175538, intron 3 of 3)	23242.0	NM_001291439	208715.0	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding	4.17793468182737	3.78015889059152	4.43308812121589	4.69017931422923	4.05167851796472	4.04359089250183	4.24994922674838	4.35097233816401	-0.362211039592491	0.43563702470294	0.724744835370587
Merged-chr4-3651738-4	chr4	3651649	3651849	+	913.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-4757.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	4.72790696994695	4.37649831911458	4.90207613242098	4.68263584344689	4.25089357814614	4.52207913181453	4.94046584451517	4.86591894962008	-0.031915706759469	0.935294377427746	0.976553886506881
Merged-chr12-40564437-4	chr12	40564323	40564523	+	982.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	118370.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.76134694597296	4.59171720987345	4.87403781890048	4.77344054430254	5.07224473161466	4.93640958982148	4.95263780628893	4.90595501929321	0.445269745141588	0.16619776087318	0.457337785153094
Merged-chr5-97061688-4	chr5	97061589	97061789	+	977.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 11 of 15)	intron (NM_080708, intron 11 of 15)	49907.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	5.19023369891676	4.92656770832852	4.9995006591668	5.03332709028678	5.06253699768004	5.13805398400886	4.8687433686172	5.03017995435127	-0.0184423852717798	0.952448607585821	0.983110341498473
Merged-chr6-54699629-3	chr6	54699524	54699724	+	949.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289740, exon 3 of 3)	3' UTR (NM_001289740, exon 3 of 3)	18000.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	3.54513598906006	3.34500348304472	3.62331835238071	2.92017804757715	4.92146206098681	5.17345109771601	5.45912453625097	5.02153527301944	5.09421274424525	8.23968386417621e-24	4.58197232631405e-21
Merged-chr10-10744326-4	chr10	10744258	10744458	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114333, intron 5 of 9)	intron (NM_001114333, intron 5 of 9)	-6688.0	NR_046010	78056.0	Mm.271285	NR_046010	ENSMUSG00000112730	4930567K20Rik	1700038H22Rik	RIKEN cDNA 4930567K20 gene	ncRNA	5.64905307877342	4.93677602156093	5.36036482745118	5.6163395345428	5.46630684360221	5.47480140413052	5.36272913973798	5.16554358739785	-0.0929999557090313	0.769504674379923	0.909742530773464
Merged-chr18-70568930-4	chr18	70568822	70569022	+	961.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001311071, exon 1 of 3)	exon (NM_001311071, exon 1 of 3)	630.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	5.14337854277852	4.9368442853675	5.11333516192907	4.76232549791221	4.84034738899002	5.15503369421467	5.14869867617029	4.8694906256305	0.0464459914908835	0.887779938876295	0.957920308900409
Merged-chr7-141215768-4	chr7	141215657	141215857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025886)	promoter-TSS (NM_025886)	-103.0	NM_025886	66985.0	Mm.21202	NM_025886	ENSMUSG00000038618	Rassf7	2400009B11Rik|AW210608	Ras association (RalGDS/AF-6) domain family (N-terminal) member 7	protein-coding	6.43148688669624	6.4159287664826	5.96494358099866	5.86484584321845	6.19081524301342	6.43356256061112	6.22625313582289	6.11574871339143	0.0937031495241793	0.71826377073026	0.887468701166664
Merged-chr6-67036596-4	chr6	67036490	67036690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040278)	promoter-TSS (NR_040278)	-9.0	NR_040278	320172.0	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	6.13124837516199	6.30920214643359	6.40075372094997	6.42356525519818	6.24659513974674	6.39087349018272	6.58777215056872	6.34316728502255	0.0948950894783038	0.674591293852425	0.866196444512786
Merged-chr15-99099222-4	chr15	99099153	99099353	+	676.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176835)	promoter-TSS (NM_176835)	-231.0	NM_176835	72778.0	Mm.30544	NM_176835	ENSMUSG00000038009	Dnajc22	2810451A06Rik|AI506245	DnaJ heat shock protein family (Hsp40) member C22	protein-coding	4.05885520108203	3.77149863736027	3.62616698568793	3.87303408565619	3.93185873622012	3.55721713198304	3.82097816828336	3.56583651263619	-0.304841530727829	0.527444030026683	0.784362457088697
Merged-chr6-89050770-4	chr6	89050664	89050864	+	921.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-45346.0	NR_134978	232217.0	Mm.281744	NM_175017	ENSMUSG00000055403	4933427D06Rik	-	RIKEN cDNA 4933427D06 gene	ncRNA	5.8249532862647	5.37903065420643	6.14813072452159	5.82880853008451	4.82345689294019	4.8199320064518	4.88175603408681	4.81574164236252	-1.80653019713891	3.04242193650544e-08	1.4642092699021e-06
Merged-chr1-157013195-4	chr1	157013127	157013327	+	908.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73601.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	4.67365802809918	4.46640089619465	4.7089555567574	4.79590546260627	4.34140352954408	4.12360677471342	4.19763113983768	4.21286973483714	-1.04000518889776	0.00683873118661845	0.0598687409804798
Merged-chr3-121722139-2	chr3	121722039	121722239	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1398.0	NM_010171	14066.0	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	3.93940209526743	3.9483941349826	3.9399845526048	3.73339280611333	3.93179986173117	4.37189134978533	3.76847111635631	3.78129885287154	0.27038976643143	0.554745022706959	0.801044670619386
Merged-chr10-41450353-4	chr10	41450290	41450490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153398)	promoter-TSS (NM_153398)	32.0	NR_102360	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	7.75025789284306	7.87388901398548	7.75155471881008	7.97962749356044	8.02103230986678	7.78331496037397	7.92146872601769	7.96794402737135	0.103257544633761	0.536580476387742	0.790527921862516
Merged-chr11-49088233-5	chr11	49088177	49088377	+	811.880005	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008330, intron 1 of 1)	intron (NM_008330, intron 1 of 1)	1260.0	NM_008330	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	3.32650414722235	3.45983455310739	3.32691866158524	3.24643368705022	3.43359129664641	3.77211025680309	3.18751239961034	3.78619966531543	0.755374380588833	0.156709491749045	0.442794049986316
Merged-chr2-127323155-4	chr2	127323057	127323257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13002.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	5.59440040021001	6.08522072806199	6.07574308035258	5.32601829586721	6.61117581840156	6.56582220000985	6.37440522905617	6.05011812198111	0.964315541114383	0.000984495519068965	0.0132718573014791
Merged-chr5-127615616-4	chr5	127615523	127615723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 1 of 7)	intron (NM_133895, intron 1 of 7)	1769.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	5.63838714425074	6.02516007310687	6.29238984970605	6.06753393139919	6.14521215274072	5.97635980517556	5.88930432708737	5.66353419054157	-0.142551278414776	0.598462466233516	0.825981840347031
Merged-chr19-12442734-4	chr19	12442637	12442837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	14832.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	7.59785245421717	7.5709606296194	7.3664048885428	7.49467201013065	7.25278190807523	7.61314373250498	7.4088471284681	7.43091037923599	-0.113468344219628	0.53086440204276	0.786869282179433
Merged-chr13-86020474-1	chr13	86020374	86020574	+	664.333313	f0_balb.idr	Intergenic	Lx|LINE|L1	26321.0	NM_007749	12867.0	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	3.20693593705696	2.98053110503931	3.35715811706703	3.68325425014552	2.58341841390035	2.64057162603627	2.76354835462378	2.61567016208377	-3.86507345348943	1.93293428441818e-05	0.000493310611081396
Merged-chr5-65990256-4	chr5	65990149	65990349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027961, intron 5 of 6)	intron (NR_027961, intron 5 of 6)	14036.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	5.78991387476189	6.14977718637838	5.52726015073895	5.67953139946209	5.73362416086063	5.73314344959895	5.6884777574831	5.7628071161926	-0.125301202258843	0.645706304551214	0.850934142345746
Merged-chr14-57910707-4	chr14	57910612	57910812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20376.0	NM_001360097	75965.0	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|HK11	zinc finger, DHHC domain containing 20	protein-coding	5.60900117380893	5.81445115023294	5.60998362140923	5.82079616031544	5.08980130596714	5.33682558842214	5.42036032008406	5.35418211242263	-0.752287785006384	0.00700519525310257	0.0609156208929192
Merged-chr5-140701914-2	chr5	140701814	140702014	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347517, intron 1 of 22)	CpG	464.0	NM_028833	74239.0	Mm.179704	NM_028833	ENSMUSG00000036555	Iqce	1700028P05Rik|mKIAA1023	IQ motif containing E	protein-coding	4.58992233175422	4.71649119430667	4.63070191866365	4.31917390550447	4.62287184181778	5.01684478810605	4.60900933007542	4.45969429007083	0.282302242477789	0.448667938422292	0.733878953633932
Merged-chr3-14893923-4	chr3	14893818	14894018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357334, intron 3 of 7)	intron (NM_001357334, intron 3 of 7)	7630.0	NM_009801	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	6.35748160783182	5.92193838393989	6.23572277908408	6.420037633312	6.1452512599821	6.02782421679674	5.71698837893349	5.91894039781471	-0.442341394007957	0.0853939386229986	0.318183277875015
Merged-chr4-133130480-4	chr4	133130397	133130597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153423)	promoter-TSS (NM_153423)	-136.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	7.25086998435571	7.17969188707738	6.49271459135586	6.67107882706412	7.18338261321785	7.25419943258781	6.82639208979345	6.92398172948785	0.176042769936127	0.476866019002705	0.753208576524599
Merged-chr17-26715542-4	chr17	26715426	26715626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029870)	promoter-TSS (NM_029870)	-124.0	NM_029870	77128.0	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	7.88919664426459	8.12601380358933	7.64720811434801	7.70107527849102	8.26323578589164	8.31476715508637	7.87432241672762	8.02447479133611	0.361199076479915	0.0618658697790697	0.2631813737153
Merged-chr2-117272196-3	chr2	117272094	117272294	+	730.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026620)	TTS (NM_026620)	22455.0	NM_026620	68215.0	Mm.219389	NM_026620	ENSMUSG00000027349	Fam98b	2610510H03Rik	family with sequence similarity 98, member B	protein-coding	3.37363258591343	3.67120368238623	3.6519725753976	3.14053736792768	3.93254074174673	3.82172640206629	3.16528972596529	3.30917076845571	0.39962262344871	0.499476118069478	0.768387448003553
Merged-chr13-43561246-4	chr13	43561153	43561353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-1062.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	6.2818619717732	6.91355870176427	5.86178857309316	4.98278814185467	6.39962255164901	6.40450385685012	6.01590111054171	5.67022879966797	-0.0755219207928694	0.902620976971232	0.963848753135321
Merged-chr17-29111494-3	chr17	29111393	29111593	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17724.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	5.6400111300046	5.76196536255698	5.61983747660688	5.67671743122808	3.85812432228224	4.09106753574804	4.19908998349786	4.21483365062101	-3.65332190763641	2.57187700223059e-18	6.85631584800641e-16
Merged-chr2-152767776-4	chr2	152767666	152767866	+	892.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289739, intron 2 of 4)	L2b|LINE|L2	13593.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	4.32070614570844	4.47474937113148	4.53445656486699	4.44984887314088	4.83571948952882	4.44967026612109	4.25591004581224	4.31872987990378	0.123986519315296	0.751196498367955	0.902050378109251
Merged-chr7-126822184-4	chr7	126822060	126822260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026884, intron 4 of 7)	intron (NM_026884, intron 4 of 7)	-1143.0	NM_029978	68952.0	Mm.440393	NM_026884	ENSMUSG00000058966	Fam57b	1500016O10Rik|A330104J06Rik|AI413816|AW060769	family with sequence similarity 57, member B	protein-coding	5.70298374845839	5.43499180499178	5.77524947864841	5.01888937234367	5.66634350176804	5.63927505505397	5.72254451924149	5.90239862964883	0.410132604423315	0.180522816175945	0.476894059255775
Merged-chr15-95906514-4	chr15	95906417	95906617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 3 of 19)	intron (NM_175344, intron 3 of 19)	-76445.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	5.05190560173524	5.02576143356363	5.15050722146657	5.2129989841878	4.79358803381807	4.54433676847185	5.45150029068347	5.32208741670189	-0.0716151082885037	0.843317433869842	0.940485571882828
Merged-chr15-83149759-4	chr15	83149678	83149878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178627)	promoter-TSS (NM_178627)	133.0	NR_004432	104307.0	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	6.16292852942306	7.00235388909734	6.69916044421871	5.96515226121673	6.36146669843126	6.66125907326009	6.40096508707234	6.35798079364408	-0.101959847124657	0.727205436537375	0.891414327712709
Merged-chr2-150135438-4	chr2	150135359	150135559	+	827.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023266, intron 1 of 2)	intron (NM_023266, intron 1 of 2)	1219.0	NM_023266	104348.0	Mm.485851	NM_023266	ENSMUSG00000068134	Zfp120	AI315103|E030042N05Rik|F80|MZF31|Zfp844	zinc finger protein 120	protein-coding	4.30167860408768	3.96658756582922	4.30235557933739	4.34524852278478	4.06043371269812	3.93698205344146	4.06492234434606	4.17243014355217	-0.46683394834261	0.261674156016213	0.573611813883764
Merged-chr3-31097975-3	chr3	31097846	31098046	+	828.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011386, exon 2 of 7)	exon (NM_011386, exon 2 of 7)	2888.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	3.1411804744139	3.38602808257118	3.07496692000197	2.95761253591017	3.22931887501062	3.43879017748425	3.41745292096071	3.57707416726593	1.00647592357975	0.0678569537539822	0.277967266071615
Merged-chr16-4960611-4	chr16	4960509	4960709	+	889.7625119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028301, intron 1 of 16)	intron (NM_028301, intron 1 of 16)	3628.0	NM_028301	72615.0	Mm.290628	NM_028301	ENSMUSG00000022515	Anks3	2700067D09Rik|C81345|mKIAA1977	ankyrin repeat and sterile alpha motif domain containing 3	protein-coding	4.38408529795039	4.3845271801237	4.69170041702597	4.46174410251765	4.15515281352571	4.22007611688238	4.48778151123385	4.50585567754321	-0.322904180131274	0.402796318481834	0.700257410380736
Merged-chr6-3355058-3	chr6	3354965	3355165	+	885.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	44506.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	3.5429693301906	3.3060219593254	3.54340769136906	3.55944321543051	4.32091114481848	4.15525191297282	4.09624359831831	4.23328477522785	2.00383620325503	1.71357170952143e-05	0.000445635077501009
Merged-chr16-36674600-4	chr16	36674493	36674693	+	959.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8516.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	4.28961429201974	4.03030067794856	4.74190945023283	4.59899301971221	4.44965484487082	3.92741180378514	4.55106955502982	4.03971165422465	-0.404404700827171	0.374759725159007	0.677891254741963
Merged-chr4-89137631-7	chr4	89137472	89137672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024433, intron 1 of 7)	CpG	202.0	NM_024433	66902.0	Mm.28500	NM_024433	ENSMUSG00000062937	Mtap	1300019I21Rik|MSAP	methylthioadenosine phosphorylase	protein-coding	5.50803598993669	5.42375913846932	6.51232474945611	5.57625530078897	5.31871509202164	5.47288692416537	5.26623883987835	5.58770994698843	-0.702246768788341	0.0459746705643172	0.220082655453331
Merged-chr5-117667093-4	chr5	117666999	117667199	+	819.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 5 of 19)	intron (NM_001312914, intron 5 of 19)	-199740.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	3.91497056809163	3.91017730113242	4.37923517990309	3.58551535342709	4.36040617530653	4.2482870062176	4.35825039714688	4.29609191898731	0.910383559970739	0.0416751455760945	0.206717434631417
Merged-chr4-130520420-4	chr4	130520302	130520502	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53634.0	NM_025998	67149.0	Mm.423029	NM_025998	ENSMUSG00000078532	Nkain1	2610200G18Rik|2810426C15Rik	Na+/K+ transporting ATPase interacting 1	protein-coding	5.43321547489548	5.81900525872799	5.0289015880463	5.12716779524367	5.60407866133244	5.6655422253118	5.79912971116578	5.34037738212203	0.391888019811446	0.223249193855894	0.53126456385506
Merged-chr18-3507864-4	chr18	3507800	3508000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026505)	promoter-TSS (NM_026505)	-57.0	NM_026505	68010.0	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	8.98219563816612	8.97824224283189	9.11364709607055	9.34141914924335	8.97865371126499	8.99563677293888	9.35669405856977	8.70030351539714	-0.107293840542147	0.562394501449131	0.805653387338931
Merged-chr7-25719490-4	chr7	25719385	25719585	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028771)	promoter-TSS (NM_028771)	-432.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	5.62638199466573	5.68324234161285	4.76028355663982	5.20187234680635	5.5101589194698	5.62578440551676	4.73851885458531	5.0429502728077	-0.154163855917061	0.693025396333044	0.875211530726656
Merged-chr1-75479485-4	chr1	75479358	75479558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177056)	promoter-TSS (NM_177056)	13.0	NM_001001566	74241.0	Mm.260577	NM_001001565	ENSMUSG00000032997	Chpf	1700028N03Rik|AI414328|D1Bwg1363e	chondroitin polymerizing factor	protein-coding	6.79353588479812	6.93752421840418	7.29520740582096	7.02589442998231	6.97270683268959	7.2994881222803	7.08704750675962	7.31006770996633	0.19710247155798	0.342453280278927	0.651489563997695
Merged-chr6-24515059-4	chr6	24514914	24515114	+	900.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172535)	promoter-TSS (NM_172535)	53.0	NM_172535	214704.0	Mm.61131	NM_172535	ENSMUSG00000046192	Iqub	4932408B21Rik|Trs4	IQ motif and ubiquitin domain containing	protein-coding	4.0422337703154	3.83567942134959	3.90425031960741	3.86619805579044	3.68052281389754	3.75207000617739	4.10826649578306	3.80056819297982	-0.194721019846976	0.666059475423166	0.861861238586864
Merged-chr5-102481578-4	chr5	102481489	102481689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029270, exon 1 of 10)	5' UTR (NM_029270, exon 1 of 10)	198.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	5.76252988578546	6.16082461436025	6.02605339464677	5.39075046223629	5.7305843717015	5.64166222357448	5.70980919810323	5.57674428191673	-0.305667961569642	0.30315140391454	0.615670331523426
Merged-chr1-58716355-3	chr1	58716199	58716399	+	839.88092	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	3013.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	2.95424397632089	2.99520738067798	3.06726046420073	2.68698332679177	2.84158799375052	2.93912853117403	2.75634962704213	2.76364614574029	-0.445628087586352	0.481298742042983	0.756510503784291
Merged-chr15-59784439-4	chr15	59784347	59784547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10512.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	7.2995705651058	7.42160295326033	7.25837875915615	7.2100562181805	7.28425239629925	7.286835639961	7.24347897399218	7.37648964515618	0.00312568113863284	0.985938418300861	0.994788540667462
Merged-chr12-41417788-3	chr12	41417706	41417906	+	973.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	68251.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	4.21270310265486	3.82211646283526	4.37814612151031	4.8141845487021	3.94653414284727	3.86358455608312	4.05662442298391	3.96992882759389	-1.05141984077239	0.0282135500050697	0.160875773116307
Merged-chr10-17518686-4	chr10	17518591	17518791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-204537.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	7.9095289012271	7.99758372938475	7.71240546455657	7.72653519650682	7.88242931497516	8.11614885726708	7.78525439600739	7.44097132208765	-0.0148867163852819	0.93992161702833	0.978363933407335
Merged-chr17-42457684-4	chr17	42457588	42457788	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355270, intron 2 of 2)	MTC|LTR|ERVL-MaLR	141088.0	NM_001355270	627626.0	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	4.15220803296417	4.09896146914477	4.56261749651017	4.49843718076982	4.97050851438583	4.86663320062878	5.37832183797241	5.28366628230699	1.61419058447154	2.48067000697463e-05	0.000614589663858153
Merged-chr4-53250525-4	chr4	53250414	53250614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040665, intron 2 of 2)	MTEa|LTR|ERVL-MaLR	4318.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	7.21153875728555	7.64120043725781	7.09817816050559	6.38190654194349	7.18550683144502	7.43284965814089	7.33041507169827	7.08112285045749	0.148506850114394	0.589704759930929	0.820539533210917
Merged-chr10-86705621-4	chr10	86705532	86705732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011631)	promoter-TSS (NM_011631)	-179.0	NM_001003910	103220.0	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	9.12257075060883	9.06552768009664	9.2544871182931	8.96083359645886	9.16885621251395	9.30202749664366	9.37169690825562	9.16022816516538	0.187056483240083	0.205404294341671	0.508980757770089
Merged-chr7-118481598-4	chr7	118481476	118481676	+	957.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10399.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	4.94211581306001	4.39265328814133	4.48415757835549	4.46070962010728	5.99201414184343	5.75198144652927	5.66199089507836	5.50055669055278	2.17262704413773	1.30160615644928e-11	1.15664200511739e-09
Merged-chr4-35222112-4	chr4	35222012	35222212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	Tigger7|DNA|TcMar-Tigger	3768.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	7.71996188029012	8.01190123782533	8.1724391228244	7.96065318878696	7.78996193845113	8.01827387868021	7.73272711496617	8.01221632006141	-0.109891782964089	0.54090226675664	0.793009827469438
Merged-chr15-91179452-4	chr15	91179374	91179574	+	928.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011994, intron 3 of 9)	intron (NM_011994, intron 3 of 9)	12533.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	4.07417548411416	3.86926859495504	3.77151737490124	4.20864044139823	4.10840486494056	4.05353909911954	3.75736685871831	4.07229107215794	0.00628697535273527	0.988830434189292	0.995500582557674
Merged-chr19-14565669-2	chr19	14565569	14565769	+	893.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302951, intron 4 of 19)	intron (NM_001302951, intron 4 of 19)	31544.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	3.20128208972177	3.41986058073936	3.20167202029571	3.11199562053207	3.47608630244209	3.37321675442001	3.24887756734276	3.13808032340496	0.318383592999375	0.557989035426834	0.802963980746693
Merged-chr9-89179584-4	chr9	89179482	89179682	+	964.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19691.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	4.83258385117442	4.88685663450688	5.04879878581583	4.15285306868614	4.80524167035083	4.57656902172296	4.46774149965628	3.95437531632711	-0.594138368271323	0.197133911146697	0.498437110190953
Merged-chr14-103033615-4	chr14	103033516	103033716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 1 of 2)	intron (NR_045657, intron 1 of 2)	187.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	7.85927250182414	8.30457623396474	8.22722846214876	8.1428712635791	8.15698432115567	8.33355608407524	8.1998929180634	7.92309456347924	0.0191787134185653	0.914781037948416	0.968254810553924
Merged-chr5-110101319-4	chr5	110101242	110101442	+	725.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281812, intron 2 of 6)	CpG	783.0	NM_001281812	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	3.53696096655677	3.68798927496187	3.75125160953642	3.37745353813508	3.70855591718996	3.87115831339893	3.52413519160752	3.74900709326584	0.413911027862323	0.392814417661577	0.692163706131799
Merged-chr4-19869710-4	chr4	19869636	19869836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	51009.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	6.21376295789008	6.52104048738667	6.86954308343069	7.05513180513335	5.89993056513599	6.0019912010217	5.67828084629728	6.16982246607782	-1.15615079779231	2.87364002945324e-05	0.000699770180145235
Merged-chr4-139235729-3	chr4	139235637	139235837	+	984.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	41626.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	5.53745803618108	5.88615047872994	5.6047661260065	5.11461436980369	4.58060208215587	4.38215358907568	3.96719261102396	4.24114431796589	-2.56049455429882	3.00771200354098e-09	1.76930522892598e-07
Merged-chr2-127270173-4	chr2	127270064	127270264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139308)	promoter-TSS (NM_139308)	-65.0	NM_139308	99138.0	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	7.69831499218747	7.70387556013618	7.42998251530238	7.4608941051223	7.58932663224501	7.74035986608617	7.80648904439905	7.65328568085887	0.160134164573575	0.363977936103478	0.668945377208539
Merged-chr5-88765788-3	chr5	88765679	88765879	+	946.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007832, intron 1 of 6)	L1ME1|LINE|L1	766.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	3.2431412018183	3.68838427479746	3.49736756260223	3.71539573098472	3.56274932682322	3.72545022117243	3.42601562051301	3.88978614739521	0.314758261421159	0.547791177802953	0.797027776266171
Merged-chr7-63933997-4	chr7	63933889	63934089	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	4926.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	4.45266511237761	4.39155972090044	4.4987578889706	4.74251228498352	4.79911833061304	4.91369259199036	4.85806690054799	4.81073817621735	0.622742777846447	0.0768914607024987	0.299715677956916
Merged-chr13-100449667-4	chr13	100449558	100449758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008670, intron 1 of 15)	Lx8|LINE|L1	3206.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	5.784012366047	6.36188596875224	6.6062000812522	5.99271666779209	6.49755956524874	6.45814651268912	6.63103555124777	7.13407112916244	0.717340074448613	0.0111317741252451	0.0851505111656005
Merged-chr4-40774863-3	chr4	40774763	40774963	+	922.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16978.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	3.6180390246689	3.73694083326261	3.93601971008295	3.76945558257524	4.0865244585143	3.85211140991475	3.82274534280617	3.97961275251389	0.501763705173528	0.258314308852951	0.570161070139054
Merged-chr2-45219993-4	chr2	45219886	45220086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102544.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	5.65415815412382	5.80125753945408	5.92482951150273	6.27737139236116	5.93254617015727	5.62800118796441	5.77982926889388	5.89835311900109	-0.219779052906207	0.428680502535794	0.71961368508163
Merged-chr4-34457365-3	chr4	34457244	34457444	+	917.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93271.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	3.39244941081332	3.56285062240373	3.80169118670357	3.68331373715549	3.46272447948624	3.44412875867437	3.38091315242364	3.5061051401512	-0.571157949358653	0.256453769469022	0.568097935299251
Merged-chr12-70457221-4	chr12	70457103	70457303	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028339, intron 3 of 7)	intron (NM_028339, intron 3 of 7)	4049.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	5.24417012675524	5.21695551708261	5.11442334705765	5.61096239644145	5.40457060615583	5.06930323093859	5.36445444130071	5.0761572543252	-0.155194425696501	0.624729369881915	0.839597677979436
Merged-chr13-93179756-4	chr13	93179641	93179841	+	898.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154997, intron 4 of 15)	intron (NR_154997, intron 4 of 15)	12676.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	4.47995788635422	4.73128614614356	4.60030696336673	4.42978776832161	4.63508972858403	4.16240094573811	4.5787051010316	4.3914600663086	-0.213139163003587	0.576436235625793	0.813520896079505
Merged-chr9-49489092-4	chr9	49489006	49489206	+	866.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2881.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	4.1633271679265	4.14665470659156	3.67942932288682	4.27055678177555	4.35200417035811	4.09269546087107	4.14566095348133	4.16140103322815	0.255300843112995	0.560125487624383	0.804203083823139
Merged-chr2-109281134-3	chr2	109281038	109281238	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139303, intron 1 of 16)	intron (NM_139303, intron 1 of 16)	400.0	NM_139303	228421.0	Mm.274086	NM_139303	ENSMUSG00000027115	Kif18a	AU024633|B130001M12Rik|gcd2	kinesin family member 18A	protein-coding	6.15226200779996	6.17588205499977	6.28534914056147	6.02918319997846	5.87263827522514	6.30851737466943	6.10193730665754	6.10857174061687	-0.0905963105378219	0.706509891011642	0.882087097793719
Merged-chr19-57360948-4	chr19	57360822	57361022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040316)	promoter-TSS (NR_040316)	-23.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	8.21901636226993	8.35169536312485	8.34870150473025	8.2085091268992	8.249649429173	8.31916419044327	8.14590302904541	7.89532769522985	-0.150427441396687	0.367869897383902	0.672391391879664
Merged-chr18-7756982-3	chr18	7756882	7757082	+	810.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111850.0	NM_001282093	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	3.34476746333242	3.12066848522911	3.14629734108848	3.31458140346714	3.71267354965518	3.74167155063234	3.55638903797824	3.80516135852342	1.53890092748824	0.00287495683017685	0.0309445867556568
Merged-chr7-56050098-4	chr7	56049982	56050182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010418)	promoter-TSS (NM_010418)	-73.0	NM_010418	15204.0	Mm.20929	NM_010418	ENSMUSG00000030451	Herc2	D15F32S1h|D7H15F32S1|D7H15F37S1|jdf2|mKIAA0393|rjs	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding	9.26482793538811	9.35716045507268	9.48384477987948	9.64075847906325	9.07464879826083	9.30592945564582	9.2080258958171	9.05421919823466	-0.351386067043201	0.0238356547298766	0.143718599577966
Merged-chr11-106770443-3	chr11	106770380	106770580	+	946.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_148431, intron 7 of 7)	B3|SINE|B2	8986.0	NM_001353435	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	3.48954082669925	3.89620787901883	3.60117135541303	3.37346408211076	3.69012017117986	3.71870769633089	3.53295662934336	3.36697243624143	-0.0397876458571344	0.938451533750385	0.977694472070763
Merged-chr9-120140809-4	chr9	120140692	120140892	+	918.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8950.0	NR_153960	17433.0	Mm.432562	NM_008614	ENSMUSG00000032517	Mobp	AI835053|AI839848|MOBP155|MOBP170|MOBP69|MOBP73|MOBP81|R74645	myelin-associated oligodendrocytic basic protein	protein-coding	4.1831813715502	4.36567129831265	3.81515195692535	3.5803300750467	4.18592078241146	4.35751374731664	4.33497325996122	4.43053171456811	0.789817129643342	0.0844978109788987	0.316317959801569
Merged-chr11-32224997-4	chr11	32224889	32225089	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1516.0	NM_010822	268395.0	Mm.263161	NM_010822	ENSMUSG00000020287	Mpg	9830006D05|AI326268|APNG|Aag|Mid1	N-methylpurine-DNA glycosylase	protein-coding	4.76277945415541	4.90708181877942	4.84136621571675	5.18865366924661	4.85010061576597	4.67953147674026	5.05651657219474	5.19696462889667	0.00996405992359013	0.976952121319528	0.991819874535068
Merged-chr8-127440734-4	chr8	127440639	127440839	+	891.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033620, intron 20 of 24)	intron (NM_033620, intron 20 of 24)	141087.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	3.59657624506568	4.05133386481047	3.7471210975957	3.69852521056138	5.28888428559798	4.80655981371055	5.12613446207446	4.89964558904634	2.93415869991622	5.66588010896566e-12	5.36834865248784e-10
Merged-chr12-3349576-4	chr12	3349458	3349658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15574.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	6.1443200246059	5.97232768460119	5.85077496664823	6.10321007606518	5.88592361500041	5.90288595246266	5.5889957256363	5.79831900943381	-0.360779327968193	0.149355031139651	0.431576920047058
Merged-chr7-98869274-4	chr7	98869157	98869357	+	887.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30412.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	4.00589522122756	4.43042761744697	4.0064457680922	4.13555296994424	4.27174303427396	4.33536879932807	4.47869455420682	4.49715854015853	0.571006897728842	0.153139128341932	0.437555330104179
Merged-chr14-73173866-4	chr14	73173771	73173971	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001170694, exon 11 of 15)	exon (NM_001170694, exon 11 of 15)	31086.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	5.67252087421956	5.33419579463125	5.95767398284432	6.20100871174632	5.67385122774637	5.07302807844827	5.14314231881197	5.23544740802836	-0.892958567305694	0.00893063418962145	0.0727731666838082
Merged-chr19-4334004-4	chr19	4333889	4334089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001984, intron 12 of 20)	intron (NM_001001984, intron 12 of 20)	-27767.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	7.72429553861285	7.39685117955263	7.34528459415477	7.46481406442192	7.25889910258	7.03598846298464	7.15908746534293	7.09552050466225	-0.462590788745148	0.0144819404835235	0.102310921767904
Merged-chr14-70101537-4	chr14	70101435	70101635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	1442.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	6.88680175278436	6.86149332351321	6.83306641200549	6.8401144510169	6.90017644831746	6.96714258132999	7.11749242561737	6.98621823095629	0.191769530192165	0.309716972144817	0.621889033831587
Merged-chr12-56541275-3	chr12	56541176	56541376	+	788.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4368.0	NM_009385	21869.0	Mm.89972	NM_009385	ENSMUSG00000001496	Nkx2-1	AV026640|Nkx2.1|T/EBP|Titf1|Ttf-1	NK2 homeobox 1	protein-coding	3.23368930460685	3.33713571793768	3.41042293355558	3.5146426392926	3.45793293897463	3.46683748972418	3.28401210905544	3.46230323892159	0.113411779267282	0.82625993910921	0.933410935212266
Merged-chr1-154258780-4	chr1	154258674	154258874	+	932.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_108050, intron 1 of 2)	intron (NR_108050, intron 1 of 2)	-1868.0	NR_040629	78112.0	Mm.401935	NR_040629	ENSMUSG00000099933	4930452N14Rik	-	RIKEN cDNA 4930452N14 gene	ncRNA	4.79863297683596	5.13491538852882	5.23688453989123	4.98434836717707	4.50809042304599	4.72883587076029	4.66020655377209	4.79626048861007	-0.786130949433343	0.0212478284751208	0.133274513837736
Merged-chr3-146059601-4	chr3	146059522	146059722	+	929.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172864, intron 16 of 22)	Tigger7|DNA|TcMar-Tigger	48414.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	4.38724052199489	4.37389780157121	4.93177655592548	4.84740412270221	4.929372325695	4.06206007688184	5.05470597034969	4.64654573521062	0.138262831231867	0.753337019167625	0.902798885097597
Merged-chr2-66158740-4	chr2	66158614	66158814	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33921.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	4.77439635119605	5.18134402670475	5.16414701108351	5.38352318879423	4.78060169934465	4.99270699133728	4.97769652829653	5.03258464516986	-0.423914603339021	0.201399606064459	0.503757337739823
Merged-chr12-108275604-4	chr12	108275537	108275737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159910)	promoter-TSS (NM_001159910)	-220.0	NM_001159910	668158.0	Mm.482792	NM_001159910	ENSMUSG00000084883	Ccdc85c	EG668158|Gm265|Gm9010|hhy	coiled-coil domain containing 85C	protein-coding	7.08447676693238	7.1932334848432	6.86181884924901	6.91070801456547	6.85879686325817	6.64387889584961	7.13758751787677	6.36365203337692	-0.322641490218709	0.169398559219529	0.461960079946625
Merged-chr13-20800815-4	chr13	20800750	20800950	+	927.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012054, intron 1 of 20)	MTB_Mm|LTR|ERVL-MaLR	6737.0	NM_012054	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	4.58846274330058	4.2045114837264	3.81210618225029	4.02829965875788	4.75702657056457	4.75911576614121	4.453327717816	4.20613214041828	0.893422318608244	0.0406465191667074	0.203786568178611
Merged-chr8-106935663-4	chr8	106935546	106935746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009229)	promoter-TSS (NM_009229)	-104.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	6.64797539491934	6.68243786030126	6.4013957007536	6.52149917516158	6.66254997824034	6.71563434808695	6.25474476138829	6.64440729921013	0.0243662685472309	0.91236327581094	0.967207481621882
Merged-chr5-142911701-4	chr5	142911637	142911837	+	881.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4983.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	4.29522585360117	4.90425537972475	4.03663191986476	4.03651880633458	4.59212848228942	4.72303380544056	4.49119667523179	4.24530877728233	0.351416670343733	0.431275627775943	0.721589896351691
Merged-chr3-84504504-4	chr3	84504391	84504591	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293801, intron 7 of 7)	intron (NM_001293801, intron 7 of 7)	-24052.0	NM_001033301	229474.0	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	5.72744992389732	5.84261401583933	6.36280810457619	6.36247466345246	5.07884113689063	4.86035263838269	5.27338333594122	5.32957021827289	-1.64923559544277	1.62344899379571e-07	6.67179422225086e-06
Merged-chr7-122159426-4	chr7	122159398	122159598	+	970.0285640000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011121)	promoter-TSS (NM_011121)	63.0	NM_011121	18817.0	Mm.16525	NM_011121	ENSMUSG00000030867	Plk1	Plk|STPK13	polo like kinase 1	protein-coding	3.96284035747368	3.79942261782635	3.66991237630096	3.82734182729552	3.72389285392596	3.40474025069666	3.75989021623477	3.91660164995961	-0.30502536366588	0.523446458373057	0.782507755382099
Merged-chr12-80109135-4	chr12	80109039	80109239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007564, exon 2 of 2)	3' UTR (NM_007564, exon 2 of 2)	3874.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	6.69824188416563	6.4200172314108	6.30712316163837	5.77467098147603	6.53903423629197	6.44591416034511	6.03299445873479	6.10353627180141	-0.037828868433868	0.896015616449237	0.960994089571403
Merged-chr10-128037015-4	chr10	128036926	128037126	+	995.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282976, intron 2 of 7)	intron (NM_001282976, intron 2 of 7)	1680.0	NM_001113199	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	5.57726428282257	5.72774374554991	5.2360427567867	5.21326567365513	5.50446473566586	5.64738284044195	5.03693163700074	5.09463791791123	-0.177758360746157	0.586810028807448	0.818903628768642
Merged-chr14-104474643-4	chr14	104474563	104474763	+	894.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6664.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	4.58085349121185	4.57462914486012	4.61922846731229	4.7391932147459	4.0735179077971	4.41001951891017	4.52162487347915	4.22995650233345	-0.759908726968444	0.0463337336614712	0.221207916579909
Merged-chr3-97737830-3	chr3	97737736	97737936	+	979.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 24 of 46)	intron (NM_001039376, intron 24 of 46)	30178.0	NM_178080	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	3.39773823772932	3.65172798164448	2.93393605928601	3.63026719415988	3.04849846205251	3.39476880448907	3.63496978766197	3.33915412971563	-0.219614057953113	0.726853271306422	0.891273682846738
Merged-chr6-88813090-4	chr6	88812990	88813190	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166249, intron 5 of 7)	intron (NM_001166249, intron 5 of 7)	28845.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	5.51472414926636	5.39483406210817	4.65837883689761	5.10362915348037	5.6554506098037	5.63583009616796	5.40749047078413	5.45854948270827	0.605035337449379	0.0618469074771376	0.263130064750231
Merged-chr15-6341666-4	chr15	6341584	6341784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	41895.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	6.22713584157835	6.32588313976367	6.22823543856003	6.46315059935835	6.21491933678052	6.14762103887935	6.2897661041567	6.35321330153298	-0.113257916719566	0.613371916086414	0.833270342878421
Merged-chr19-5512380-4	chr19	5512265	5512465	+	982.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1848.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	4.02916988070639	4.6212366927296	4.31158098450082	4.21624726212665	4.49961074441014	3.92366402531595	3.90545094649237	4.26600927921561	-0.311121702864459	0.492868531574878	0.76384534943756
Merged-chr3-96564830-4	chr3	96564705	96564905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040409, intron 1 of 3)	intron (NR_040409, intron 1 of 3)	1996.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	6.79616917034956	6.73365720417753	6.266895646235	6.81092388786172	6.46236814488613	6.46568555645635	6.81550910492781	6.6794662590351	-0.0978026920198638	0.673244631516749	0.865685375148687
Merged-chr6-108566750-4	chr6	108566646	108566846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56421.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	6.79704159622336	6.63182068662588	6.81238348676515	6.9358954093467	6.69603918483089	6.94618540918546	7.16087997018899	6.86256543691134	0.161217464748542	0.446211474063551	0.731969452475618
Merged-chr19-7583372-4	chr19	7583260	7583460	+	913.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362425, intron 4 of 4)	intron (NM_001362425, intron 4 of 4)	23833.0	NM_001356574	56072.0	Mm.298242	NM_019516	ENSMUSG00000024972	Lgals12	Grip1|gal-12	lectin, galactose binding, soluble 12	protein-coding	5.27435108986504	4.63606630900462	4.95536654759242	5.17941853516111	4.57290040562662	4.40371905927512	4.89775488976341	4.61235007818491	-0.831236072021158	0.0243011172168538	0.14569821617069
Merged-chr17-57231726-4	chr17	57231626	57231826	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3590.0	NM_009778	12266.0	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	4.82124945136987	4.98161571740236	4.5941615044109	3.82928378563842	5.27372596906538	4.81150112674585	4.08064836937442	4.63194951464077	0.290148744405283	0.561223376895288	0.804894831534649
Merged-chr1-43466139-4	chr1	43466040	43466240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	20389.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	5.53005018450967	5.19800133634152	4.98972078058282	5.60050269542076	5.48291262225811	5.35087078332098	5.30856086653707	5.65033149174029	0.153528326640247	0.621293382418188	0.837757076551181
Merged-chr18-80294874-4	chr18	80294778	80294978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001190373, exon 4 of 4)	3' UTR (NM_001190373, exon 4 of 4)	38572.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	6.15706589336134	6.94725927265409	6.05080169034554	5.9307294385588	6.39757196213855	6.55935535228259	6.16680227904839	5.82733662526354	-0.107218723996245	0.736291531808137	0.895944255036988
Merged-chr8-79496523-4	chr8	79496427	79496627	+	812.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97059.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	4.53234940816979	4.37962888449581	4.89436974757311	4.90223857484103	4.44244884074132	4.38303807020737	4.66798283300162	4.53017415457039	-0.435434513555199	0.250598567431443	0.561771083119258
Merged-chr12-35827082-4	chr12	35826991	35827191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98530.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	5.80637631648161	6.21962204150562	5.61383962094289	5.64086335208488	6.65678442985793	6.23857788951377	6.27744385944274	5.94866163544998	0.735993537718101	0.00952908497068673	0.0762444625818919
Merged-chr10-8135398-4	chr10	8135278	8135478	+	907.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179255.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	4.10380380906645	3.93659650629345	3.91966600057595	3.32426813101448	5.31835967964192	5.05479229584548	5.24028855808711	4.84295476609651	3.10635086971639	1.6949216391131e-13	2.11283410421071e-11
Merged-chr18-68096730-4	chr18	68096633	68096833	+	945.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 2 of 5)	intron (NM_172631, intron 2 of 5)	-131213.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	5.19593994739503	5.00960901396141	5.25392760696807	4.97524598378438	4.7945828380154	4.79553980990864	5.30782318499468	4.51670517370187	-0.431569484018118	0.223105139850266	0.531170612293098
Merged-chr12-75720218-3	chr12	75720114	75720314	+	940.5277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030750, intron 2 of 2)	B1_Mur1|SINE|Alu	15515.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	3.91901537583351	3.80020526181737	3.77632610453802	4.18882543895302	3.82758674912161	3.40633431467475	3.54375686266313	3.61307186155282	-0.97564933584925	0.0528692142856812	0.239824038290287
Merged-chr1-54835973-3	chr1	54835866	54836066	+	827.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	90421.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	3.70637774126665	3.74376937506546	3.65273741931981	3.82720208660216	3.46573921874895	3.7137388528691	3.6919771885109	4.07024212659719	0.0251170628955432	0.958666738973599	0.985248919859626
Merged-chr8-10840743-1	chr8	10840643	10840843	+	1000.0	f0_balb.idr	Intergenic	Intergenic	41711.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	3.04635691814818	3.18858278008035	3.46357986867429	3.70820721552869	3.19854440252143	3.29070082506444	3.34446964977455	3.35566134181853	-0.333163737528781	0.566960244662765	0.808119800518362
Merged-chr7-121035472-3	chr7	121035359	121035559	+	763.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021554, intron 1 of 4)	intron (NM_021554, intron 1 of 4)	1014.0	NM_021554	59052.0	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	3.67008230622199	3.51856460839817	3.10648947565842	3.28739747236042	3.43870909747866	3.41596136278698	3.34959198370766	3.47153294147024	0.0420262662941106	0.937496437891029	0.977343160253754
Merged-chr6-52698169-4	chr6	52698084	52698284	+	938.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15545.0	NM_025816	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	4.24096592504669	4.92753521864508	4.44291511272813	4.1988235099451	4.90767446997213	4.97946127933326	4.78416619682901	4.87286383185207	0.863604189925622	0.0241612056759157	0.145080711240392
Merged-chr15-95851816-4	chr15	95851706	95851906	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253813, intron 2 of 20)	intron (NM_001253813, intron 2 of 20)	-21734.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	5.29321454364511	5.45202944436638	5.9318332164114	5.95911346210384	5.35414375099231	5.11170320542396	5.26792260285791	5.12040839133588	-0.839896858654206	0.00795399798762792	0.0669217048181286
Merged-chr8-125359682-3	chr8	125359573	125359773	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	133160.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	5.37965284663053	4.86918765278707	5.49281523155062	5.72380063995128	3.69773617277664	3.86431550504045	3.92984577000833	4.07326055970783	-3.79250045641003	1.34803074646102e-14	2.03895213623224e-12
Merged-chr17-34366703-2	chr17	34366611	34366811	+	890.333374	f0_c57.idr|f1_c57bl6.idr	intron (NM_079835, intron 8 of 8)	intron (NM_079835, intron 8 of 8)	-10421.0	NM_001111094	100038862.0	Mm.440426	NM_201405	ENSMUSG00000062638	Btnl1	Btnl3|Gm316|Gm33	butyrophilin-like 1	protein-coding	2.62037327713288	2.63383472280026	2.70400432585394	2.36778481303862	3.73152403071927	3.18083279748642	3.47345029674564	3.34410809000614	4.49631390255699	7.51969364717659e-10	4.96055861086546e-08
Merged-chr9-114861644-4	chr9	114861563	114861763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-17511.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	6.6889616092924	6.60552858045485	7.22569174633498	7.20127996386108	6.22769702029022	6.12646215710132	6.71371624291344	6.38494445851208	-0.842273587282657	0.00115162187099039	0.0150821146559752
Merged-chr5-150598354-4	chr5	150598196	150598396	+	979.464294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-3771.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	4.67772616662857	4.51037445661817	4.47347331893737	4.84222865617426	4.90213321272786	4.55840218737755	4.61849575569279	4.51434470662338	0.0430572485119493	0.906713400264105	0.965386042771435
Merged-chr15-79414786-4	chr15	79414689	79414889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11486.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	7.09042874072263	7.33889183953686	6.72514486775914	6.93258155769355	6.97138024920689	6.97930123578991	7.18931834477073	7.27222045292161	0.0913194004296819	0.672210499108927	0.865098520982242
Merged-chr3-79237830-4	chr3	79237747	79237947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	ORR1A4|LTR|ERVL-MaLR	24928.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	7.81839707704186	7.71654451672396	7.59157297131842	7.69859567452049	7.68230068506455	7.64723666071472	7.98678965687663	7.56837108668482	0.0298751961820382	0.867182564804749	0.950297561796699
Merged-chr9-14835519-4	chr9	14835409	14835609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310728, exon 19 of 19)	3' UTR (NM_001310728, exon 19 of 19)	-24701.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	8.28768276900527	8.23762126900262	8.03263266786282	8.20036593069576	8.03706676032694	7.68333792896569	7.78634160894584	7.90207647454969	-0.422077289651598	0.0129755982475024	0.0948834008678995
Merged-chr5-121400346-4	chr5	121400255	121400455	+	995.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172722, intron 1 of 23)	intron (NM_172722, intron 1 of 23)	2373.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	5.913914900416	5.46688484711041	5.17552622259911	5.52959413328259	5.82694373642231	5.7863186443559	5.75443927973438	5.58086857865357	0.330464376796376	0.248601107233163	0.559779134217498
Merged-chr15-34054946-3	chr15	34054852	34055052	+	725.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-27767.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	3.55525963778565	3.17635846774072	3.39923939974928	3.82989861900808	3.23606817162859	3.19771562349635	3.14606182875235	3.503675761671	-0.861930373764466	0.135850273573857	0.410243322164528
Merged-chr1-192537371-4	chr1	192537291	192537491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 11 of 11)	ORR1D2|LTR|ERVL-MaLR	233828.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	6.46911235878391	6.35386719750299	6.83011109689976	6.93117814828415	5.96908721824137	6.06874935287376	6.35118653203683	6.28679892164064	-0.750908863444245	0.00275547355971704	0.0298799287792655
Merged-chr10-117930094-3	chr10	117929970	117930170	+	663.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045342, intron 2 of 3)	MLT1L|LTR|ERVL-MaLR	4611.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	3.62695989085689	3.28367748765996	3.39905305604904	3.11289915569953	3.58736139909077	3.51687986718196	3.80396907353585	4.02606281421714	1.26664599738024	0.0155492890206156	0.10756952504601
Merged-chr13-24831581-4	chr13	24831487	24831687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019551)	promoter-TSS (NM_019551)	-72.0	NM_019551	56196.0	Mm.427162	NM_019551	ENSMUSG00000035958	Tdp2	D13Ertd656e|Ttrap	tyrosyl-DNA phosphodiesterase 2	protein-coding	8.38218874205157	8.38552779681893	8.16715300147913	8.31009963810997	8.26010323557322	8.48028074207816	8.36513511709641	8.08485765163602	-0.0140190977706439	0.932010633995978	0.975424341903512
Merged-chr14-52141851-4	chr14	52141763	52141963	+	912.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023879, intron 14 of 24)	intron (NM_023879, intron 14 of 24)	30960.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	4.50389660778152	4.72728655478628	4.59113849903941	4.89331252753049	4.55845065029112	4.38958286333667	4.68872381684434	5.20440089300104	0.0993101638819193	0.799390141986384	0.922544723583327
Merged-chr2-116977991-4	chr2	116977876	116978076	+	898.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77824.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	4.06387972505951	4.30798813559544	4.3893007121081	3.98254645805142	4.23119103793735	4.63784232791797	4.40887454647823	4.21113803450666	0.4684013585442	0.250333819676253	0.561407446697629
Merged-chr4-119181624-4	chr4	119181502	119181702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013848, intron 8 of 12)	intron (NM_013848, intron 8 of 12)	-7407.0	NM_001145936	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	6.89384115370405	6.90402149921717	6.86749860650221	6.96078917888403	7.25092527413819	7.0853869589458	7.1288407908907	7.22398366640322	0.36758458992642	0.0455774111927871	0.218756207099892
Merged-chr4-106911421-4	chr4	106911326	106911526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023672)	promoter-TSS (NM_023672)	-44.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	7.10546608702194	7.04438560956462	6.4542555745507	7.1671185515122	7.13065562502213	7.19981119925636	7.4205034911424	6.74254901799947	0.227272526066112	0.352030299691153	0.659242934613292
Merged-chr14-67933768-3	chr14	67933658	67933858	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177780)	promoter-TSS (NM_177780)	-186.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	4.96293203491688	4.64935190924287	4.83492616620071	4.56303552283619	4.75255064721172	4.52343736604957	4.42042329648413	4.56876350334125	-0.361378407249892	0.320764596128071	0.632492193135354
Merged-chr12-8482337-2	chr12	8482237	8482437	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17672.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	3.07887015338396	2.80476365483188	2.97307703300515	2.4197359246073	2.55281194093135	2.54020357377037	2.90426975286098	2.72869224196029	-0.711258017206004	0.327216788311157	0.638738585322506
Merged-chr9-48266789-2	chr9	48266689	48266889	+	849.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74109.0	NM_030069	78252.0	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	2.35783457925025	2.15626477561814	2.12447634932068	2.12445995341375	2.34994397370122	2.72919095248035	2.48468377107299	2.7292066723941	2.31297901014295	0.00254825720998645	0.028134388079669
Merged-chr13-63815301-4	chr13	63815226	63815426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023507)	promoter-TSS (NM_023507)	86.0	NM_023507	76251.0	Mm.186610	NM_023507	ENSMUSG00000021470	Ercc6l2	0610007P08Rik|1700019D06Rik|9330134C04Rik|Rad26l|Sr278	excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2	protein-coding	8.5458296099508	8.65786043033841	8.14759790865918	8.62695580549464	8.66755103246264	8.92510567871013	8.58699503769305	8.84374234937702	0.30865806349123	0.0830991871566318	0.313273504720189
Merged-chr10-105575469-4	chr10	105575376	105575576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177368)	promoter-TSS (NM_177368)	925.0	NR_038032	327812.0	Mm.191660	NR_038032	ENSMUSG00000085282	Gm15663	9330159K06	predicted gene 15663	ncRNA	6.35612983857001	6.3763951871076	6.37545121194521	6.79383374076692	6.30592853939831	6.10521249619861	6.77845189547607	6.38881455826961	-0.12733441794636	0.618330440190947	0.835969883041169
Merged-chr9-106280580-4	chr9	106280475	106280675	+	966.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027354)	promoter-TSS (NM_027354)	-486.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	4.5592384586218	4.87268990387531	4.51627877063179	4.80534492351725	4.64984196039783	4.85538987963302	4.80691347371765	4.64014064162898	0.0569593473452386	0.869969787575563	0.951177836469555
Merged-chr3-108880666-4	chr3	108880575	108880775	+	828.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177091, intron 4 of 12)	intron (NM_177091, intron 4 of 12)	9333.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	4.23537580802373	4.09403932010006	3.89584099296948	3.6951484364135	3.9811931554269	4.40651361357684	4.17354141731122	4.31589192269358	0.623198383604832	0.156458597030793	0.442366096447062
Merged-chr1-74364432-3	chr1	74364315	74364515	+	966.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033345, intron 5 of 9)	intron (NM_001033345, intron 5 of 9)	2307.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	3.67551735443063	3.39505325612676	3.36686065921776	3.51871399304589	3.07383863896547	3.29146764943949	3.41050867167419	3.57900346022343	-0.51795471415004	0.341076432929758	0.650197428160039
Merged-chr10-67124396-3	chr10	67124297	67124497	+	770.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2861.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	3.02344382585481	3.06177780157731	3.13447074062413	3.03131050928683	3.06488826587901	2.87412970147739	2.82903113115086	2.69606300064882	-0.786551349355475	0.208344181891969	0.512607346107447
Merged-chr13-29959213-4	chr13	29959111	29959311	+	819.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010093, intron 1 of 6)	MTC|LTR|ERVL-MaLR	25180.0	NM_001289920	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	4.11805348252048	3.60356132760496	3.84461395965891	3.70928747237243	3.98574152734616	3.61397692290693	4.05824584093872	3.94031616720517	0.253834328966772	0.589040812765637	0.820158760819336
Merged-chr3-104518616-3	chr3	104518516	104518716	+	809.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6698.0	NM_001310698	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	3.91872795403432	4.18406437339787	4.06290220944186	4.31412261110346	3.60984968515748	3.81857105264329	4.04495542523246	3.811756357187	-0.879428162695448	0.0533169059734607	0.240914541752208
Merged-chr9-110676257-1	chr9	110676157	110676357	+	570.0	f0_c57.idr	intron (NM_028312, intron 1 of 6)	ID_B1|SINE|B4	19754.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	3.31595182056836	3.51278843187662	3.44120121081791	2.92446769779183	3.7259018969914	3.55955661875776	3.91285076680331	3.75525676177115	1.45163648885387	0.0074272108727321	0.0635563167480402
Merged-chr8-121108401-4	chr8	121108301	121108501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166482)	promoter-TSS (NM_001166482)	-22.0	NM_001166482	234814.0	Mm.31690	NM_172761	ENSMUSG00000031816	Mthfsd	AW049977|BC052066|C920004D05	methenyltetrahydrofolate synthetase domain containing	protein-coding	7.93076047522145	8.40398064841924	7.83335312153446	7.9580331601139	8.46054759740886	8.22144805748113	8.03174175486699	8.18319413505172	0.236844592599081	0.225823179918204	0.534406148128128
Merged-chr12-55434092-4	chr12	55433979	55434179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35254.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	5.29554066534136	5.48623029319737	5.62309763046865	5.15362755256459	5.23943712807618	5.53129931186755	5.20709868041764	5.43915687934468	-0.0583605234749978	0.845700876098317	0.941564790489552
Merged-chr7-63941723-4	chr7	63941618	63941818	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2803.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	4.98685895280622	5.61231362944147	5.16890228037431	4.75259800372145	5.57135159657705	5.66853261309776	5.61456694551685	5.09592957868945	0.615544873720343	0.0762753776845174	0.298263009064823
Merged-chr14-17902230-1	chr14	17902130	17902330	+	1000.0	f0_c57.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-79414.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	5.1471678646076	4.71884581456729	5.3591200271018	5.22236579603355	5.3098733823586	5.0342367859561	5.46283787522765	5.29862825253048	0.282722509685429	0.380319350620155	0.682748175274071
Merged-chr2-52483689-4	chr2	52483590	52483790	+	944.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	-58816.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	4.83414184442948	5.17885837553871	5.00683949175925	4.87353882869922	5.01083460806422	4.85465095598079	4.43319346929292	4.63330791550183	-0.435235580013253	0.221531675728865	0.529567542541136
Merged-chr13-39923323-4	chr13	39923224	39923424	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	364687.0	NM_172143	218165.0	Mm.364096	NM_172143	ENSMUSG00000047094	Ofcc1	opo	orofacial cleft 1 candidate 1	protein-coding	5.38626587963838	4.92907941360658	5.05036296963079	5.72090118700854	5.6113544024259	5.59125885771638	5.71649010541103	5.49666098996667	0.469350220951145	0.152199376298399	0.436166984338479
Merged-chr5-5321001-4	chr5	5320875	5321075	+	870.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-54907.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	4.29581827948441	3.65545838491051	4.06399984235691	4.20325574913068	4.3366693638163	4.6241950352273	4.09626422602687	4.29374091644843	0.65982470224752	0.136921133014771	0.411508257743677
Merged-chr13-20798689-4	chr13	20798598	20798798	+	784.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012054, intron 1 of 20)	intron (NM_012054, intron 1 of 20)	4585.0	NM_012054	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	3.65300188454046	3.52505181886245	3.65348249542787	3.60396205946259	4.22604039370908	4.17685283166418	3.85143520826109	3.86572135194433	1.25173103932514	0.00550693080726171	0.0510122108185946
Merged-chr8-86825740-1	chr8	86825640	86825840	+	712.0	f0_balb.idr	Intergenic	Intergenic	59518.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	3.12278468946225	3.13714035368361	3.27573141254814	3.237619975602	2.61736850210945	2.62074664378229	2.8766322742583	2.67505858305812	-2.5254626385854	0.000457236997206079	0.00717972032299394
Merged-chr6-39420172-7	chr6	39420023	39420223	+	980.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311109)	promoter-TSS (NM_001311109)	246.0	NM_018810	54484.0	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	4.94980678998154	4.90215078359267	4.88075326956365	4.44441075837977	5.16344860343647	5.15598383121213	4.74576321593683	4.72528914742504	0.357818267343553	0.32016546201449	0.631993605500135
Merged-chr12-98901439-4	chr12	98901341	98901541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081191)	promoter-TSS (NM_001081191)	43.0	NM_001081191	319670.0	Mm.390484	NM_001081191	ENSMUSG00000051166	Eml5	BC027154|C130068M19Rik	echinoderm microtubule associated protein like 5	protein-coding	6.57192521247697	6.54347333166399	6.73469397119979	6.5321451840847	6.50872848906785	6.34678395645583	6.5551172155277	6.38240839125805	-0.20026446153346	0.341715190735146	0.650694102764498
Merged-chr13-102846683-4	chr13	102846566	102846766	+	979.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 5 of 28)	intron (NM_175171, intron 5 of 28)	86411.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	5.1759706701607	4.87946852407889	5.69357339574485	5.65511770520816	5.3782114210293	5.38573688587021	5.24775123912434	5.17331008184078	-0.185661344449299	0.579194197306655	0.815251710931408
Merged-chr2-69713546-4	chr2	69713428	69713628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177244)	promoter-TSS (NM_177244)	-922.0	NM_177244	320720.0	Mm.289566	NM_177244	ENSMUSG00000027086	Fastkd1	5330408N05Rik|mKIAA1800	FAST kinase domains 1	protein-coding	7.02275014140843	6.81942707344366	6.97348562287575	7.17446779933197	6.81090948192066	6.79768344913395	7.59197198859861	7.10271414088915	0.147786743408339	0.54245665309356	0.793833794123973
Merged-chr11-114851012-4	chr11	114850901	114851101	+	966.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110337)	promoter-TSS (NM_001110337)	-531.0	NM_001110337	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	5.3719086501406	4.86392709205785	4.7861415459592	4.50686281227716	4.87157576424534	5.10793124563132	4.87524415865022	4.8591309063645	0.0481893853281082	0.89630411018263	0.961051021717019
Merged-chr8-84237780-4	chr8	84237649	84237849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172503)	promoter-TSS (NM_172503)	-707.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	6.28445556809981	6.48989822391818	5.90653184822393	5.7383133580368	6.44692793863188	6.24435064060684	6.39024337311567	5.92660751755639	0.216907252314637	0.441485407485349	0.72851318019698
Merged-chr10-117449925-4	chr10	117449843	117450043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-2508.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	5.35848559577425	5.39492066728669	5.44840356652121	5.69718637771828	5.50511639020405	5.30302779598935	5.67795694887148	5.67928899723521	0.0886019122157186	0.75598207908257	0.90409705311029
Merged-chr1-74601403-4	chr1	74601322	74601522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305230)	promoter-TSS (NM_001305230)	-25.0	NM_001305230	57751.0	Mm.280920	NM_021313	ENSMUSG00000026171	Rnf25	0610009H16Rik|AO7	ring finger protein 25	protein-coding	6.68789123920328	6.28702392739643	6.43315243550765	6.5867455461136	6.64537326371143	6.62720913700695	6.58080776815656	6.5787673308024	0.143523882047947	0.5011935343333	0.769119803481994
Merged-chr13-43767905-4	chr13	43767782	43767982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17230.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	6.69983800362123	6.96180471009124	6.56030600507965	6.47934307941626	6.94680363952134	6.81683039153845	6.5909830452072	6.39732940669363	0.0419974853563881	0.85900118051318	0.946576014812915
Merged-chr5-108634190-3	chr5	108634119	108634319	+	887.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359426, intron 1 of 9)	intron (NM_001359426, intron 1 of 9)	4409.0	NM_001359426	72392.0	Mm.258324	NM_028223	ENSMUSG00000013495	Tmem175	3010001K23Rik|AI504381|mTMEM175	transmembrane protein 175	protein-coding	3.84048253074934	3.8308081693777	3.94417567597919	3.51399364585033	4.07778106697904	4.25518566398342	3.71480820434457	4.28676058206548	0.887342253893566	0.0548759605717004	0.244724473502263
Merged-chr10-13837875-4	chr10	13837782	13837982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	31075.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	7.72958220228745	7.68421520318177	8.18395727619404	8.23236342215369	6.75230435932684	6.69425790125329	6.8521004999131	6.89705161179083	-1.59485530251301	5.05207937124716e-14	6.99614703435801e-12
Merged-chr17-71190260-2	chr17	71190160	71190360	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	6282.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	2.58510189198033	2.74756609786098	2.78903405061416	2.33641271513041	2.84230497594521	2.89867861768304	2.8393320402046	2.90757980145531	1.23519663212602	0.0679289104834276	0.278167755108727
Merged-chr2-30807774-4	chr2	30807667	30807867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356435)	promoter-TSS (NM_001356435)	-201.0	NM_001356435	66617.0	Mm.33167	NM_170592	ENSMUSG00000026857	Ntmt1	2610205E22Rik|AL033331|AL033332|Mettl11a|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding	9.16353317204841	9.27368522047863	9.05964943867578	8.98494974206641	9.13573671224015	9.36196989041868	9.25043926944342	8.87738435796182	0.055167871822698	0.737338899677432	0.896374281276027
Merged-chr15-31510623-4	chr15	31510527	31510727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 1 of 25)	intron (NM_172606, intron 1 of 25)	20410.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	5.63607890060177	5.59841113428857	5.3089074583417	5.79196043937153	5.81818035868504	5.73151544124479	5.9693997142166	5.65910749599837	0.311730529324006	0.25274413381807	0.563987544706138
Merged-chr1-149826349-4	chr1	149826261	149826461	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C1|LTR|ERVK	96078.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	4.24660467259409	4.18539411739114	4.69885568920011	4.57816100757673	5.22628690938636	5.39347446746988	5.30221152472167	5.5847788568886	1.81230673207981	4.18395694559506e-07	1.57571360545244e-05
Merged-chr5-64602112-4	chr5	64602016	64602216	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045078, exon 3 of 4)	non-coding (NR_045078, exon 3 of 4)	8583.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	5.34419300065525	5.19391884490004	5.10685276944905	5.02433193037359	5.01650264157154	4.95094230396776	5.04902380883514	5.19795931182837	-0.201288118523987	0.512465046874183	0.775836940008879
Merged-chr17-15704735-4	chr17	15704631	15704831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007690)	promoter-TSS (NM_007690)	-236.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	8.13427652010044	8.15718270256697	8.74144878049653	8.0780773648992	7.86431334053495	8.14671840678757	8.06547747203039	8.11767551757983	-0.323768349741296	0.109788182383135	0.365876223508832
Merged-chr7-98672755-4	chr7	98672649	98672849	+	910.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16180.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	5.00973384301471	5.13411154387169	4.7495370852003	5.15025879492058	4.75857648460332	5.00522761573516	4.91758916311925	5.16526748812637	-0.137982357965192	0.67527837344727	0.866647594179011
Merged-chr4-129820027-4	chr4	129819913	129820113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164745)	promoter-TSS (NM_001164745)	-466.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	8.28826856884682	8.52853040338219	8.26075978742583	8.24073787723045	8.41254812682423	8.62261709177802	8.5619505500329	8.28419375459953	0.179346437976456	0.278687460108237	0.590940619728438
Merged-chr12-105009881-4	chr12	105009777	105009977	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172500)	promoter-TSS (NM_172500)	-68.0	NM_172500	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	4.68539724481421	4.75211578788398	4.92379643288057	4.72544804729292	4.12571825035505	4.3216130780474	4.17481627984287	4.95084805212105	-0.746425570533583	0.0705558148393473	0.28469911249716
Merged-chr6-89256179-3	chr6	89256063	89256263	+	918.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29562.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	3.96439087380103	3.99936542438573	3.91750625455962	4.00040686543716	3.95938365271933	3.64115400438661	3.80169402935848	3.86597404380295	-0.404353988475435	0.360373581942591	0.665793074685122
Merged-chr4-12419441-4	chr4	12419343	12419543	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-247428.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	4.52987454787784	4.6978540083037	4.86017677540378	5.00361238968285	4.46235574839947	4.32719503486631	4.46786157610903	4.34885591459109	-0.87006748504253	0.0189348857389185	0.12330889588385
Merged-chr3-106788158-4	chr3	106788047	106788247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007651, intron 1 of 7)	intron (NM_007651, intron 1 of 7)	2002.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	6.16385006886105	6.21483751459679	6.05648033396874	6.44146441746749	6.38178454564789	6.14149617219672	6.75591537945256	6.48804020966018	0.326102265138585	0.186117306577992	0.484014101364226
Merged-chr10-13499627-5	chr10	13499541	13499741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1387.0	NM_001330198	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	5.56637818161238	5.79204459952737	6.33223114194002	5.55967940727696	5.15915320367975	5.29084913174721	5.8325145545875	5.6948072820123	-0.543838309412042	0.102496076871598	0.351644491041765
Merged-chr2-142813191-3	chr2	142813086	142813286	+	810.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 12 of 26)	intron (NM_001355123, intron 12 of 26)	88278.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	3.343893404679	3.63820945502983	3.96505645257234	3.76943581244276	3.64737036832645	3.70275540522182	3.57206166358094	3.46885364930852	-0.308784159039073	0.54101616473693	0.793009827469438
Merged-chr3-108123471-3	chr3	108123369	108123569	+	959.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010306, intron 3 of 8)	intron (NM_010306, intron 3 of 8)	22683.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	3.49391903566958	3.97453535657399	3.10551919560214	3.64871419979379	3.1723872994192	3.49264421416024	3.36447601177422	3.83560744053988	-0.331778876329202	0.583320425754543	0.817051076495496
Merged-chr11-103017151-4	chr11	103017061	103017261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026551)	promoter-TSS (NM_026551)	-14.0	NM_026551	68087.0	Mm.277449	NM_026551	ENSMUSG00000020935	Dcakd	3010024O21Rik|6720485C15Rik|AI849483	dephospho-CoA kinase domain containing	protein-coding	7.25443321279454	7.27721596429367	6.68116235367714	6.98050456578742	7.0006298943774	7.2208182266531	7.02069794118909	6.73948733816983	-0.0885374154033784	0.692185066658454	0.874789880500739
Merged-chr15-7114065-4	chr15	7113916	7114116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15556.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	5.58257694117136	5.73809150530858	5.98173448504581	5.93182998326869	5.89292011865477	5.94952613653961	5.74394353776599	6.34439522931978	0.278358584040657	0.303973788267799	0.616696040763071
Merged-chr5-146767855-3	chr5	146767768	146767968	+	985.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 2 of 8)	intron (NM_011669, intron 2 of 8)	27088.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	4.12101537487054	4.54791136642743	4.30173972404608	2.69908001823901	6.15487248199257	5.75313008175609	5.45542666977891	4.92889844536012	2.89759391998798	0.00838421804653073	0.0693769188949094
Merged-chr6-115015656-4	chr6	115015542	115015742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026894, intron 5 of 7)	intron (NM_026894, intron 5 of 7)	22232.0	NM_026894	68971.0	Mm.24937	NM_026894	ENSMUSG00000030316	Tamm41	1500001M20Rik|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding	6.31452971283703	6.78050047995052	6.86440324374132	6.77716928223905	6.67136875331785	6.71471204893783	6.9534118039595	6.64632035308103	0.0616014073390531	0.781813388016194	0.915124077382086
Merged-chr1-152623955-3	chr1	152623837	152624037	+	873.7023929999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346118, intron 2 of 18)	LTR78B|LTR|ERV1	1280.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	3.40338008092782	3.67571800921945	3.66696310698501	3.20625778161946	3.35675570535118	3.39532005389784	3.55315484630286	3.45903478396218	-0.175868327991309	0.739819017849851	0.897555443523684
Merged-chr2-165027374-1	chr2	165027274	165027474	+	763.0	f0_balb.idr	intron (NM_144892, intron 1 of 7)	intron (NM_144892, intron 1 of 7)	7405.0	NM_144892	228869.0	Mm.233080	NM_144892	ENSMUSG00000039804	Ncoa5	CIA	nuclear receptor coactivator 5	protein-coding	3.76612435061318	3.4783603113259	3.66014799725288	3.91619311282257	3.81945349198817	3.39236962172067	3.69949133656548	4.22873295948133	0.288308276761144	0.583342259043041	0.817051076495496
Merged-chr8-56439628-4	chr8	56439538	56439738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45330.0	NR_131020	75123.0	Mm.72666	NR_131020	ENSMUSG00000110310	4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA	7.84125228678728	7.76184560888167	7.79612577359037	8.202158621692	7.89456811979726	8.19689330790455	8.01985182655687	7.76697614487463	0.0684602387796572	0.721396994230467	0.888753092785481
Merged-chr4-95048248-4	chr4	95048133	95048333	+	871.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010591)	TTS (NM_010591)	3989.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	4.97244615750046	4.98601079043822	4.51820890177083	4.54995891097546	4.38266002528637	4.46809798785535	4.27028000868188	4.38256890217308	-0.875531880093051	0.0225569666842405	0.138771160900394
Merged-chr1-52307216-3	chr1	52307099	52307299	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73967.0	NM_001113383	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	7.37676419485384	7.48316001051227	7.62434282086981	7.50800124971557	4.67580829696297	5.18880258880878	4.9063706506407	4.92779631121259	-4.28039237330287	8.89827707350891e-49	7.91713079769114e-45
Merged-chr1-53265156-3	chr1	53265033	53265233	+	878.015869	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153556, intron 4 of 12)	intron (NM_153556, intron 4 of 12)	31895.0	NM_153556	227099.0	Mm.60499	NM_153556	ENSMUSG00000026098	Pms1	-	PMS1 homolog 1, mismatch repair system component	protein-coding	3.68862836737832	3.90939328826856	3.85007821879281	3.99778748980106	3.8447056358155	4.06870799824618	3.83424625828634	3.74297348220231	-0.00484116841507165	0.991392650846141	0.996745793587504
Merged-chr1-151583691-4	chr1	151583610	151583810	+	878.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	12337.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	4.24073839993536	4.14158257435245	4.00139331127246	3.90736724203158	4.30506180120776	4.36863299713509	4.45845425632147	3.99911154656862	0.570268484466835	0.16542199636022	0.456078253822059
Merged-chr9-120073310-4	chr9	120073187	120073387	+	948.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4991.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	4.6266764142237	4.4250948628652	4.51121522491238	4.38532213114404	4.29403212971514	4.46663233285481	4.56827848110634	4.58684868651995	-0.00923494285480866	0.979966496242908	0.992772119265666
Merged-chr1-75477438-4	chr1	75477375	75477575	+	831.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001001566, exon 2 of 4)	exon (NM_001001566, exon 2 of 4)	1996.0	NM_001001566	74241.0	Mm.260577	NM_001001565	ENSMUSG00000032997	Chpf	1700028N03Rik|AI414328|D1Bwg1363e	chondroitin polymerizing factor	protein-coding	3.61185990991449	3.42343728664713	3.33643606449852	3.06565600422735	3.06859763536726	3.62605566813539	3.38335223309404	4.10492711721682	0.801197052414429	0.196135715562181	0.497142134936562
Merged-chr7-3693213-4	chr7	3693107	3693307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164205)	promoter-TSS (NM_001164205)	318.0	NM_029934	77582.0	Mm.397541	NM_029934	ENSMUSG00000035596	Mboat7	5730589L02Rik|BB1|Leng4|Lpiat|Lpiat1|mBB1	membrane bound O-acyltransferase domain containing 7	protein-coding	7.19444384324577	7.64094325896616	7.38890573871553	6.63891760345869	7.67395268939983	7.8808659704469	7.35213016254068	7.422922805208	0.454767647409196	0.0733875213799059	0.291750955177903
Merged-chr10-82699773-4	chr10	82699643	82699843	+	949.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081218, intron 1 of 14)	CpG	736.0	NM_001081218	67933.0	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838|fkls	host cell factor C2	protein-coding	4.33696525673452	4.46676959222141	4.38026761887409	4.38253822332842	4.349972489329	3.99702195147671	4.18264782432087	4.57108771285162	-0.228003327535584	0.56605064165826	0.807783748011785
Merged-chr7-126799265-4	chr7	126799169	126799369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007438)	promoter-TSS (NM_007438)	-15.0	NM_007438	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	8.49564256480216	8.68044380931776	8.34429896011694	8.35774719136785	8.47349533782937	8.80660289718877	8.80885107001887	8.42538050766287	0.20510873576378	0.243632530257098	0.554651503331108
Merged-chr10-83301851-3	chr10	83301757	83301957	+	821.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177388, intron 4 of 10)	intron (NM_177388, intron 4 of 10)	35960.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	3.57084762857542	3.38277780556315	3.41999769525105	3.49213673163306	2.93644194525916	3.23139459027388	3.45788827134395	3.18416549840446	-0.958860575975725	0.0902060430817097	0.327918707170557
Merged-chr7-105752214-4	chr7	105752117	105752317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009906)	promoter-TSS (NM_009906)	18.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	6.31875723853505	6.49811307011692	5.95591265437231	6.34858836226523	6.69606300470872	6.43927651756372	6.39397752742183	6.38763656048239	0.283725214595427	0.229562062110563	0.538633900941711
Merged-chr4-136894897-4	chr4	136894825	136895025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007572)	TTS (NM_007572)	-2011.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	6.69277129281626	6.12385459321475	5.85604092579168	6.2330273328816	5.00280227995453	5.28647069731122	5.26218753637647	5.48225071162063	-1.66631647314009	5.00782489334342e-08	2.28935111164606e-06
Merged-chr3-89485359-3	chr3	89485259	89485459	+	781.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25788.0	NM_027348	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	3.73091737807022	3.85675238553817	3.574158536217	3.28202759991798	3.63713766673483	3.57390476139178	3.80935291186047	3.51534150716489	0.0632029601541189	0.901840276828445	0.963555825043109
Merged-chr6-83482623-4	chr6	83482533	83482733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149734, intron 4 of 6)	intron (NR_149734, intron 4 of 6)	24336.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	7.04177968189156	6.71285791416217	6.97319781941936	7.02269920612003	6.38256942956308	6.3181749052098	6.4478479671332	6.71737380006668	-0.676514871493743	0.00175718550740752	0.0211582366056463
Merged-chr13-104610695-7	chr13	104610583	104610783	+	993.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	206270.0	NM_026072	67285.0	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	4.80364229238253	4.91819656983618	4.63285050422234	5.17597725067932	4.79043969813936	5.26430050165486	5.24470514224356	5.29505784137422	0.455621759392803	0.194431982438136	0.49488553827871
Merged-chr10-12964434-4	chr10	12964284	12964484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029075)	promoter-TSS (NM_029075)	-125.0	NM_001163591	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	6.502678245354	7.08392374814656	6.97397621819464	6.15464553906671	6.64332914537625	7.01187792408128	6.3814887873205	6.56640425331141	-0.0776248109286053	0.78380635233153	0.915830335083325
Merged-chr11-119091571-4	chr11	119091517	119091717	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5380.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	4.71828004937014	5.1060436136258	5.10932985492766	4.68414758137925	5.04666161754136	4.9746855085358	4.81496914434683	4.97746482484479	0.102484193661877	0.760498182524732	0.906130030835837
Merged-chr14-31129051-4	chr14	31128958	31129158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308464)	promoter-TSS (NM_001308464)	-128.0	NM_001308464	66487.0	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	8.50096930441278	8.51043627013293	8.17229975466079	8.38979626667455	8.39012463246117	8.57950349380721	8.38336049067244	8.3751241414293	0.0401643263290874	0.802645140620788	0.923936032101707
Merged-chr19-4163377-4	chr19	4163300	4163500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021485)	promoter-TSS (NM_021485)	-17.0	NR_153659	58988.0	Mm.271937	NM_021485	ENSMUSG00000024830	Rps6kb2	S6K-beta-2|S6K2	ribosomal protein S6 kinase, polypeptide 2	protein-coding	5.68251206407936	5.9730649686936	6.1105465241757	5.83883455575899	5.93368139476228	5.83339729513395	5.62808880755766	5.92188505120889	-0.108166996710424	0.673750698776576	0.86586684339396
Merged-chr11-58927851-2	chr11	58927751	58927951	+	583.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_138678)	TTS (NM_138678)	9794.0	NM_138678	192194.0	Mm.22540	NM_138678	ENSMUSG00000020490	Btnl10	BUTR-1|Butr1	butyrophilin-like 10	protein-coding	3.31513010205291	3.0375409142623	3.42349136261274	3.01088272500998	3.42544052019863	3.4859504346592	3.18641230584398	3.25632469121428	0.543721887148938	0.328675048309109	0.640138323335519
Merged-chr16-44347551-4	chr16	44347460	44347660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144550, intron 1 of 17)	CpG	159.0	NM_144550	212514.0	Mm.24035	NM_144550	ENSMUSG00000043065	Spice1	Ccdc52|D16Ertd480e	spindle and centriole associated protein 1	protein-coding	7.19487655462132	7.51044138320553	7.81482368452812	7.3347195010577	7.39330581265525	7.50738486642952	7.52387345441617	7.61595354055227	0.0402113923158493	0.840880633364586	0.939436873709166
Merged-chr13-58516512-4	chr13	58516409	58516609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	94368.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	6.88595900146889	6.99311261503002	6.83139880367972	6.9562987822638	7.10993822934474	7.19320534556246	7.19565759860434	6.93579525306646	0.262369152679536	0.165852170804582	0.456786552611799
Merged-chr5-64803216-4	chr5	64803146	64803346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008453)	promoter-TSS (NM_008453)	-277.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	7.96161930607746	7.98671826384079	8.11813056080594	7.9429293453683	7.81670576881305	7.95525759971644	7.96524951402472	7.64661912039643	-0.194745938580997	0.24413061979583	0.555192606359545
Merged-chr2-23015928-4	chr2	23015844	23016044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	24297.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	5.55757489453254	5.2510223588773	5.33272484470244	5.40450789182285	5.27168248768941	5.47701487232761	5.60511284348906	5.69979744545166	0.218716914996821	0.443617381990992	0.730108641783081
Merged-chr10-37138488-2	chr10	37138388	37138588	+	958.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_008538, exon 1 of 2)	exon (NM_008538, exon 1 of 2)	438.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	3.65520660491967	3.81558907540665	4.02075654760119	3.8206097479606	4.18313671977153	4.14421822880339	3.64241334250017	3.97208409395366	0.480780040289303	0.293986320936528	0.606364889537559
Merged-chr7-45707747-4	chr7	45707627	45707827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016974, intron 2 of 3)	intron (NM_016974, intron 2 of 3)	2480.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	6.49492672898316	7.08413565349987	6.34795500934751	6.38321912165857	6.8840931201385	7.02077496735827	6.59480411221781	6.74383761364335	0.295846489436778	0.241784157662874	0.552291471977334
Merged-chr1-150335333-3	chr1	150335233	150335433	+	756.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040603, intron 2 of 3)	intron (NR_040603, intron 2 of 3)	11438.0	NR_040603	75584.0	Mm.47709	NR_040603	ENSMUSG00000099447	2310030A07Rik	-	RIKEN cDNA 2310030A07 gene	ncRNA	3.41422182006206	3.81008395401879	3.28852546934732	3.61365328222469	3.56842185733908	3.52866181186692	3.56937972225002	3.68302095793103	0.108521692838461	0.830805164478411	0.935077092131695
Merged-chr1-138292276-4	chr1	138292166	138292366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18528.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	5.80803429578642	6.15895064487985	6.04357567305935	6.04276065331428	5.48467752986491	5.47796032009625	5.57778507279517	5.36102185805792	-0.903812093851723	0.000516040248413356	0.00791621311245997
Merged-chr3-51561751-3	chr3	51561634	51561834	+	873.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080793)	promoter-TSS (NM_080793)	-911.0	NM_080793	73251.0	Mm.192111	NM_080793	ENSMUSG00000037111	Setd7	1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717	SET domain containing (lysine methyltransferase) 7	protein-coding	4.14194803294545	3.6504757358668	3.98569269201755	3.44820797775064	3.37503880295237	3.59769752012727	3.40407571341842	3.65073558840274	-0.994515138977834	0.0630402785538205	0.266319242526684
Merged-chr6-134543840-2	chr6	134543740	134543940	+	882.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	23073.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	3.06803528879342	3.03008074226085	2.93722373230716	3.20468229751582	3.40366419984697	3.29869209945454	3.11893509624624	3.34775611092749	0.859658774281426	0.129361146504631	0.400269389977967
Merged-chr2-32167169-3	chr2	32167057	32167257	+	603.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172661, intron 1 of 29)	intron (NM_172661, intron 1 of 29)	16009.0	NM_001159634	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	3.35838411970564	3.18377292286607	3.35887283663765	3.45756069697267	3.06795065111022	3.1180390792491	2.93282298208351	3.00815620361608	-1.26074185191194	0.0296216581704872	0.165841987169297
Merged-chr5-33954589-4	chr5	33954485	33954685	+	860.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B|LTR|ERVK	-18327.0	NM_011914	24116.0	Mm.332320	NM_011914	ENSMUSG00000029111	Nelfa	Whsc2|Whsc2h	negative elongation factor complex member A, Whsc2	protein-coding	4.46543889700652	4.19958960848929	4.50874554321402	4.62522611723385	4.69631582579869	4.87236521160565	4.40241820307462	4.62562858876781	0.41699179625036	0.267083929480522	0.578731986255108
Merged-chr13-113421674-4	chr13	113421571	113421771	+	944.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81173.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	4.59687288625619	4.43087286898627	3.90405181905011	4.33874600119452	4.98718143534625	4.32317341284702	4.5371109954121	4.8383573579895	0.805324501761138	0.0543529522736796	0.243436197917992
Merged-chr18-68131423-4	chr18	68131334	68131534	+	957.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-96512.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	4.88391087048649	4.80580189300616	5.58739173175464	5.34170131021209	4.74188273936784	5.20783188315906	5.36651094905937	4.84186452996206	-0.261287866684745	0.482735188601379	0.757421686487144
Merged-chr10-40098641-4	chr10	40098550	40098750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	RSINE1|SINE|B4	43604.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	6.13232571818546	6.51522325472692	6.45808841120008	5.65945491331248	6.1196320711547	6.44512981236333	6.20031728477773	5.95282056301562	-0.0506702133831084	0.861413230700447	0.94763968960626
Merged-chr6-124733179-4	chr6	124733085	124733285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013545)	promoter-TSS (NM_013545)	-31.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	7.8677349479493	7.90555562047799	7.81660210866837	7.82350188359271	7.94275064924494	7.85671600771922	7.86711892815787	7.78035724677583	0.0172702879146545	0.913157844025982	0.967428663410909
Merged-chr17-70818071-4	chr17	70817972	70818172	+	886.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347414, exon 11 of 11)	exon (NM_001347414, exon 11 of 11)	28705.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	4.09098093993091	4.47173624625077	4.62248555825535	4.06251216851937	4.13748605040704	3.99538739932931	4.1707963902263	4.36160199418755	-0.375469912716256	0.381956789199264	0.684181047849974
Merged-chr8-119394853-4	chr8	119394753	119394953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019966)	promoter-TSS (NM_019966)	-39.0	NM_019966	56690.0	Mm.423037	NM_019966	ENSMUSG00000074064	Mlycd	AI324784|Mcd	malonyl-CoA decarboxylase	protein-coding	7.92038826297845	8.20713111353485	7.9980494679287	7.8644252373857	7.80699677081384	7.9553055633936	7.91182505612632	7.99940852580134	-0.108454106515781	0.522367224234879	0.781971587334536
Merged-chr8-122980091-4	chr8	122979986	122980186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	62198.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	5.87200540465832	5.92807206635084	5.50210134127335	5.6957914061668	5.42963739247197	5.58995915405972	5.47460836312201	5.5544239193665	-0.422382669984678	0.117716305504845	0.379497663369235
Merged-chr1-133135132-3	chr1	133135051	133135251	+	805.1777950000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133819, intron 1 of 1)	intron (NM_133819, intron 1 of 1)	3985.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	3.14846296796687	3.34933249817321	3.38577987800778	3.18476344658576	2.9836248936414	3.65685749044635	3.26022925027229	3.32859125571181	0.199648850312448	0.726324313664398	0.891034932051019
Merged-chr5-62843028-4	chr5	62842964	62843164	+	900.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001170705, exon 6 of 9)	exon (NM_001170705, exon 6 of 9)	29241.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	4.14663379978335	3.56493474477421	4.44939406248363	3.93865123889412	4.25895815708876	3.74896349244655	3.73565888746895	3.85902476881911	-0.350669394069423	0.495888329025949	0.766025331518119
Merged-chr13-49381422-4	chr13	49381323	49381523	+	926.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039179, intron 6 of 6)	intron (NM_001039179, intron 6 of 6)	-39800.0	NR_075085	75678.0	Mm.390586	NM_199056	ENSMUSG00000021385	Ippk	1810043M15Rik|InsP6	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	protein-coding	4.68333638417121	4.92586856124738	4.50556694436562	4.93538098235591	4.87037147379294	4.77673125560135	4.78084822972557	5.44151537120815	0.420825263499937	0.254361692822866	0.565699451130722
Merged-chr16-87653129-4	chr16	87653031	87653231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45823.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	7.35721157035681	7.62516297231123	7.4473133533607	7.63167845580412	7.55827747545492	7.23785005246354	7.3321256286054	7.30127919888864	-0.209547073567267	0.260723676108592	0.572549611012047
Merged-chr12-40559307-4	chr12	40559208	40559408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	113255.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	7.43553580026154	7.60617360760079	7.72303761193301	7.62378245541351	7.64224766657125	7.46986767929966	7.35044988456222	7.20836369781366	-0.222095994267297	0.236196892293316	0.546189486909001
Merged-chr2-164487205-5	chr2	164487059	164487259	+	800.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001048229)	promoter-TSS (NM_001048229)	282.0	NM_001048228	52840.0	Mm.256927	NM_026797	ENSMUSG00000017734	Dbndd2	1110017A21Rik|2900022J10Rik|AU041050|AW048677|D2Bwg0891e|Nkip|R74724	dysbindin (dystrobrevin binding protein 1) domain containing 2	protein-coding	3.65496778490337	3.68353451796593	3.43535496953577	3.55435998921633	3.69140188754943	3.54935139111616	3.64043869081951	3.49217550582329	0.0499399344245488	0.917275906133716	0.969497092919917
Merged-chr2-23571945-5	chr2	23571814	23572014	+	988.980957	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001165997, exon 1 of 12)	5' UTR (NM_001165997, exon 1 of 12)	190.0	NM_029773	76857.0	Mm.276415	NM_029773	ENSMUSG00000026771	Spopl	4921517N04Rik|AU014935|BB233739|E430033K04Rik	speckle-type POZ protein-like	protein-coding	4.36315573215865	4.01849012022074	4.52195528220822	4.29963900522292	4.15006837091876	4.309808504981	4.34396367787328	4.44248116819685	0.00395329799905442	0.992082042418851	0.996998470906017
Merged-chr3-88493090-4	chr3	88493001	88493201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	211.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	8.36208656938113	8.51304357919529	8.02736314890469	8.35624572481341	8.32985143764507	8.45235148356295	8.54883194850085	8.27493294181731	0.0948283914611877	0.582082950331701	0.816501953640427
Merged-chr4-154856289-4	chr4	154856185	154856385	+	861.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172878)	promoter-TSS (NM_172878)	85.0	NM_172878	242800.0	Mm.72944	NM_172878	ENSMUSG00000046637	Ttc34	4932418L02|B230396O12Rik	tetratricopeptide repeat domain 34	protein-coding	5.19149244807524	5.83215252690409	5.51948046687464	5.63705419770436	4.48867576192591	4.42828598666834	4.85334138381402	4.74909406249682	-1.82116677216659	1.58500264627447e-07	6.52176101012777e-06
Merged-chr10-18928044-1	chr10	18927944	18928144	+	782.0	f1_balb.idr	Intergenic	Intergenic	82973.0	NM_022032	64058.0	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	2.60422110102768	2.33776979273079	2.26063838777953	2.15647099914304	2.39829308584686	2.5843828648423	2.53279422355129	2.6621880206092	1.14222044320697	0.120348753435497	0.384018645303502
Merged-chr10-67096341-4	chr10	67096238	67096438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 1 of 7)	CpG	650.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	6.68553813171334	6.60709134986659	6.37992815298561	6.84590778544636	6.53236022108106	6.15444051967267	6.43513059154001	6.37536826165468	-0.38445466030334	0.0941339936543647	0.335639109067977
Merged-chr14-55672234-4	chr14	55672119	55672319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177992)	promoter-TSS (NM_177992)	-16.0	NM_177992	105446.0	Mm.390685	NM_177992	ENSMUSG00000002326	Gmpr2	1810008P16Rik|5730544D12Rik|AA959850|GMPR 2	guanosine monophosphate reductase 2	protein-coding	7.53428258097317	7.70979175532671	7.15582484487084	7.4826138443783	7.54901489394444	7.62822517388936	7.69137383926787	7.74695767666481	0.217384038243802	0.250043786247107	0.561163660653388
Merged-chr15-74939475-4	chr15	74939387	74939587	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-15564.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	5.8147737331142	5.1712987805061	5.09428485372347	5.67540764523064	5.61587239755826	5.41276173297875	5.58117016099261	5.23186340911587	-0.0178579861355568	0.9557463548655	0.984292813605202
Merged-chr5-66067338-4	chr5	66067251	66067451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	30828.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	7.10271339842251	6.81872192727838	7.7221422547499	7.68747347107854	7.15180558745148	7.36476775167764	7.15114199788317	7.59073409399285	-0.0937320659482569	0.713406145152661	0.885339563529906
Merged-chr11-20202915-4	chr11	20202820	20203020	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	intron (NM_008996, intron 1 of 5)	1508.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	4.53978585570557	4.44349792273296	4.19193851711456	4.41569317501849	4.44830081147956	4.46228505113257	4.12404346300438	4.57503321769851	0.0204397937763887	0.957666220326764	0.984870901124062
Merged-chr7-99053047-4	chr7	99052950	99053150	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	RLTR25B|LTR|ERVK	88094.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	5.31641316203983	4.78851305719723	4.58287176340932	4.94132586466502	4.83582288294469	4.67222840290503	4.47349264026732	4.44357191792796	-0.643294167805848	0.08956290588148	0.326714389310366
Merged-chr1-144330517-4	chr1	144330412	144330612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81408.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	7.51889765222628	7.20004058447306	7.64366928442171	7.52005461730054	6.87256551671944	7.04231516491529	7.18189660796113	6.85901774201373	-0.663527564162894	0.000888740402543109	0.0122572472607278
Merged-chr11-4527282-4	chr11	4527181	4527381	+	832.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028860, intron 4 of 17)	intron (NM_028860, intron 4 of 17)	67534.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	4.92392863505742	4.6733926335348	4.95811150500642	5.21254663706317	4.70317121555408	4.61756649463925	4.75922690252663	4.74022151730879	-0.545872577708993	0.115355016612304	0.375741777794321
Merged-chr13-104948143-3	chr13	104948042	104948242	+	992.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029879, exon 6 of 6)	3' UTR (NM_029879, exon 6 of 6)	-84249.0	NM_029984	77803.0	Mm.159995	NM_029984	ENSMUSG00000042655	Fam159b	A930021C24Rik|Shisal2b	family with sequence similarity 159, member B	protein-coding	4.65068071643295	4.13011165440107	4.43391985500542	4.41403693399131	4.00471422490378	4.39250377439564	4.2001752595771	4.06744030648902	-0.613268709540004	0.136011800971622	0.410445753226738
Merged-chr14-31382580-4	chr14	31382472	31382672	+	983.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	35105.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	4.78388645034613	4.93807955519318	5.26434436319771	4.61749762094908	5.222679527561	5.22105785090292	5.20926818508058	5.20230844692093	0.59702633748821	0.0683498009204808	0.279190209797519
Merged-chr7-140080904-2	chr7	140080804	140081004	+	900.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026769, intron 1 of 5)	intron (NM_026769, intron 1 of 5)	1397.0	NM_001190386	68566.0	Mm.44241	NM_026769	ENSMUSG00000025468	Caly	0710001P07Rik|1110004A22Rik|Calcyon|Drd1ip	calcyon neuron-specific vesicular protein	protein-coding	2.89973420489963	2.91794518272915	2.83332160624801	2.69307476142475	2.97320981157249	3.07398416030099	3.12446055783114	3.18877813502928	1.12384011149744	0.0551468506599697	0.245493091985256
Merged-chr17-33929484-4	chr17	33929367	33929567	+	989.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009059)	promoter-TSS (NM_009059)	-427.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	5.61469504300466	5.9533920210902	5.15716454343555	5.33226854754408	6.11259036444096	6.24736816311441	5.9434105687169	5.79150457606276	0.795826681615846	0.00753150937686902	0.0643147761019092
Merged-chr7-92848447-4	chr7	92848356	92848556	+	796.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	25791.0	NM_001355126	74041.0	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	4.02792659174254	3.4531720679725	3.84548921042256	3.58162092246953	3.82057191501559	3.75066771857556	3.92276493224819	3.89142004118433	0.332344615761569	0.484918624684363	0.758927501899918
Merged-chr11-52360996-4	chr11	52360901	52361101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011694, exon 1 of 9)	5' UTR (NM_011694, exon 1 of 9)	139.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	7.45803871641286	7.26422232602308	7.41110277506443	7.55498836586761	7.42293620120896	7.39778775960212	7.61407018168196	7.44466811926089	0.05245619202467	0.769797937298466	0.909872758322969
Merged-chr3-27302905-4	chr3	27302792	27302992	+	900.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14185.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	4.39926567123275	4.73266703454429	4.1692247270526	4.1374387305283	4.27812711090806	4.65224782495437	4.33730861636982	4.21621537758721	0.00193129159372972	0.996288163189607	0.998602617451138
Merged-chr11-60536581-4	chr11	60536474	60536674	+	950.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-1109.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	4.73803881568994	5.08042682542183	4.88264265005488	4.58090835048544	5.08752403189752	4.4720351240591	4.42109978508567	4.69708581750034	-0.235357766724757	0.545266544870687	0.795807410238889
Merged-chr14-59555195-4	chr14	59555084	59555284	+	932.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	42775.0	NM_001168537	71891.0	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	4.91788782290661	4.66731866874366	5.28811443431645	5.28750687811292	4.95781403055142	4.53107828247513	5.0916248253597	4.80347474650083	-0.406870093418383	0.264470119584377	0.576455127446606
Merged-chr11-83739417-3	chr11	83739328	83739528	+	856.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7512.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	3.7243565000545	3.67632254016629	3.87692601243535	3.24503811440917	4.19005848726343	3.79013827223928	3.85984199938067	3.72275574133116	0.799722270893088	0.114200646260177	0.373837784954674
Merged-chr1-164405604-4	chr1	164405506	164405706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138314, intron 13 of 13)	intron (NM_138314, intron 13 of 13)	52749.0	NM_009721	11931.0	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	5.62546613294655	5.36342725430666	6.2600228368073	6.75023509969081	5.80801418543899	5.89091201502497	6.17342600422315	6.20098210656075	-0.159737375087313	0.657342416981654	0.857212576840786
Merged-chr9-45093968-3	chr9	45093869	45094069	+	878.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005421, intron 6 of 10)	(TG)n|Simple_repeat|Simple_repeat	14786.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	2.94074761886351	2.93586572677497	3.10507399964883	3.17059598511862	2.68430838753367	2.55498087432224	2.60482459476844	2.87997984197814	-1.75054418961807	0.0115955526649396	0.0876922910261088
Merged-chr10-68301176-2	chr10	68301109	68301309	+	607.833374	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	19933.0	NR_045357	75148.0	Mm.23505	NR_045357	ENSMUSG00000112157	4930545H06Rik	-	RIKEN cDNA 4930545H06 gene	ncRNA	3.50465899199621	3.43263467298762	3.31560888412959	3.44033377072325	3.44750734062471	3.84303442937821	3.84591501810899	4.0278861185687	1.16621813025984	0.0199492029077605	0.127834296772796
Merged-chr2-3519508-4	chr2	3519440	3519640	+	960.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177647, intron 2 of 3)	intron (NM_177647, intron 2 of 3)	6475.0	NM_177647	227526.0	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	4.60769973127711	4.62197630999731	4.64938463818096	4.67824366236686	4.73123387138432	4.93653189846987	4.84727907767616	4.72447428062952	0.346538677503463	0.297565422502171	0.609736281437143
Merged-chr2-170247908-3	chr2	170247829	170248029	+	564.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105254.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	3.14661113923318	2.99161755630536	3.14699324652667	3.29603077667399	3.20611147993438	3.19445713159319	3.19429415021003	3.41673587459069	0.361052296540815	0.5154606320348	0.777533445789008
Merged-chr13-5800040-3	chr13	5799936	5800136	+	761.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58056.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	2.85477165660375	2.89716933000512	2.79580861586506	2.77954997282753	2.68049649187124	2.6292947767179	2.724561131878	2.66714026958624	-0.759508665551586	0.235327962597709	0.545349472562017
Merged-chr14-57730050-4	chr14	57729961	57730161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153382, intron 1 of 1)	intron (NM_153382, intron 1 of 1)	4357.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	6.15969082749583	6.07141036961522	6.46030674817969	6.61672726182563	6.1114122606809	6.31721852449095	6.56814473380966	6.72426585625777	0.128823068611946	0.623737084200135	0.839108068902005
Merged-chr10-41963011-4	chr10	41962896	41963096	+	948.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 10 of 17)	intron (NM_001034858, intron 10 of 17)	55386.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	3.97679631552411	4.1317547027772	4.26990622144219	4.13977222097523	4.60108657513378	3.92479129921048	4.52130984195966	4.22289141264558	0.540716581631876	0.202426190969579	0.504891999412331
Merged-chr16-20373000-4	chr16	20372897	20373097	+	974.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013790, intron 16 of 29)	intron (NM_013790, intron 16 of 29)	-47593.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	5.24115067627808	5.49581162993838	5.79136199105894	5.85879752223288	5.89088094235894	5.74736997768449	5.28270283373824	5.0149602480066	-0.148158797737634	0.664861553035678	0.861112878860318
Merged-chr11-69429544-4	chr11	69429449	69429649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 76 of 85)	intron (NM_001081330, intron 76 of 85)	-15874.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	5.94767964265455	6.25734437027896	5.94872339000946	6.22534974994507	6.27907343115801	6.21570856829448	6.13320556165119	6.27403707839984	0.171238130844964	0.464850161439648	0.7456185695221
Merged-chr3-148958895-3	chr3	148958804	148959004	+	854.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4269.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	3.23359313544086	3.41153669814637	3.40549652736151	3.63231113317391	2.92445529442959	3.52050217429215	3.16084620129112	3.23238411621163	-0.789156746048282	0.178288526765142	0.474070717868282
Merged-chr9-13614714-2	chr9	13614614	13614814	+	817.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-5275.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	2.80467824680616	2.80351367991485	3.07783333008543	3.47903202742364	2.86235520809346	3.36490090123306	3.23761070613245	3.24918256492391	0.415512709223774	0.543653150805123	0.794789016208467
Merged-chr9-45282686-4	chr9	45282594	45282794	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13545.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	5.73604223085825	5.68368902642013	5.53757353415536	5.99109429583148	5.40183537302651	5.4124047886118	5.17400418060976	5.2303574869705	-0.781141016659772	0.0063141994295952	0.0563064897518362
Merged-chr18-57085205-3	chr18	57085105	57085305	+	961.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47885.0	NM_001001979	70417.0	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding	4.63564905697266	4.42838271846026	4.28481604329718	4.73805789184083	4.20661396561212	4.04797782350283	4.12484177208368	4.08858355205897	-1.02812599720314	0.011054814218261	0.0847464320130964
Merged-chr5-114781074-4	chr5	114780973	114781173	+	793.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026718, intron 1 of 14)	intron (NM_026718, intron 1 of 14)	5933.0	NM_026718	68420.0	Mm.275554	NM_026718	ENSMUSG00000041870	Ankrd13a	1100001D10Rik|ANKRD13|AU046136	ankyrin repeat domain 13a	protein-coding	4.26234307439705	4.4824342513241	4.00584406285054	4.11573157800368	4.67812326603843	4.48222940427716	4.49527645910063	4.35048839625699	0.67779283542528	0.0826575951380337	0.312270312845927
Merged-chr2-27739679-4	chr2	27739547	27739747	+	979.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 2 of 9)	intron (NM_001290481, intron 2 of 9)	29064.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	4.93192248040422	4.45848342685964	5.10058389906292	4.90365005902341	5.44206007249695	5.17599045161197	4.71765426528634	5.03263209235815	0.505349219375718	0.163565761283684	0.453317978124739
Merged-chr12-72462045-4	chr12	72461958	72462158	+	975.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030070, intron 10 of 24)	intron (NM_030070, intron 10 of 24)	19809.0	NM_001142729	78257.0	Mm.266280	NM_030070	ENSMUSG00000021090	Lrrc9	4921529O18Rik|4930432K16Rik	leucine rich repeat containing 9	protein-coding	5.18740953214595	4.89285900923601	4.71311836383591	5.14211980921929	5.00412813046045	5.26671796480915	5.00126577866012	5.45755354388222	0.346956075025917	0.295834075136657	0.607719593315749
Merged-chr4-141869814-8	chr4	141869673	141869873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	5147.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	6.08618360251909	6.08441564776469	6.32013593215598	5.50888159158295	6.25920098769567	6.58035169513859	6.51274168096931	6.03958055485725	0.530481339700863	0.0612215756043225	0.261786046494057
Merged-chr17-10390896-4	chr17	10390792	10390992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65324.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	6.96834424806046	6.44796018740087	7.40535227928933	7.05262038823325	6.80695752291377	6.47629701839188	6.88374028323825	6.76299491518124	-0.373502274248731	0.139411344696905	0.415146612711589
Merged-chr15-27682815-4	chr15	27682690	27682890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1248.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	5.99626472299175	5.71215509720184	5.69049268773672	5.72443162691006	5.27697521144707	5.52920062641651	5.38718232034902	5.758781677813	-0.491521776365307	0.0776753407974718	0.301400393644139
Merged-chr8-11271009-1	chr8	11270909	11271109	+	546.0	f0_balb.idr	intron (NM_009931, intron 1 of 51)	intron (NM_009931, intron 1 of 51)	-41796.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	2.54754032799838	2.45973679126256	2.72263197681908	2.5634104492722	2.14820513934898	2.37353994110663	2.59830616802845	2.19148294463792	-1.41736998802811	0.0808082109570794	0.30837699162095
Merged-chr10-117829907-4	chr10	117829764	117829964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	16110.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	5.70405443376093	5.99188236198339	6.30779729426333	5.8785741963446	5.48691148747955	5.65894061947358	5.70150171458675	5.59352470735915	-0.617457469720761	0.0229237417557614	0.140071166145879
Merged-chr10-15300877-3	chr10	15300781	15300981	+	827.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-490896.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	4.21625647267263	3.58181050090295	3.82344518182339	3.99842989465569	3.48572800284099	3.65661558731766	3.80747815027063	4.05448154889737	-0.464496711410382	0.354273957201962	0.661031778977135
Merged-chr9-118821745-3	chr9	118821617	118821817	+	810.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 4 of 13)	intron (NM_001113514, intron 4 of 13)	-104819.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	2.97210492716268	3.22136672807139	3.04299206054648	2.83101992719581	3.48441402622507	3.52024773853565	3.5349273393272	3.29175670930241	1.69792998521136	0.00217842188253708	0.0249730860327117
Merged-chr2-13409931-4	chr2	13409852	13410052	+	923.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 27 of 66)	intron (NM_001081084, intron 27 of 66)	81924.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	4.7872797790836	4.90247242274919	5.04202950772946	4.88691770715633	4.90743117217872	5.24616193022038	5.01742655499967	5.07102505313922	0.298208013975038	0.343896518525711	0.652495167197173
Merged-chr12-108758091-4	chr12	108757999	108758199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-35212.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	8.56328254329127	8.46875501393015	8.2218990190037	8.26834439692301	8.20390066749578	8.34459820081096	8.40140553719692	8.18011739733314	-0.128439056695644	0.436769133824743	0.725278104435332
Merged-chr1-106933883-4	chr1	106933781	106933981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027971)	promoter-TSS (NM_027971)	-568.0	NM_027971	71869.0	Mm.321740	NM_027971	ENSMUSG00000059956	Serpinb12	2300003F07Rik|4833409F13Rik	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12	protein-coding	5.32486474840776	5.40819654781254	5.498910214937	5.54659039124147	5.26523927298822	5.4699773984693	5.4978020051759	5.46782155219119	-0.0625035442616931	0.821690191383388	0.931839131812928
Merged-chr3-50443730-4	chr3	50443675	50443875	+	947.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011990)	promoter-TSS (NM_011990)	-162.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	4.62986960361391	5.17392563887617	5.75538725276598	5.03048599952392	4.76878465018412	4.85755947283853	5.00168533961591	4.91637973731479	-0.615373560787314	0.104662298194778	0.355749855460871
Merged-chr11-22653170-4	chr11	22653095	22653295	+	905.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	140912.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	3.50344301234942	3.50768655556314	4.04850180916556	3.73282443559858	3.92721303898526	4.26123607034685	3.78826241664038	4.25064365199054	0.975296932216216	0.0437957299793172	0.213117166965582
Merged-chr2-173659702-4	chr2	173659604	173659804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027957)	promoter-TSS (NR_027957)	-141.0	NM_024436	19334.0	Mm.275304	NM_024436	ENSMUSG00000027519	Rab22a	3732413A17Rik|AI662177|AW319644|AW550514|E130120E14Rik|Rab22	RAB22A, member RAS oncogene family	protein-coding	8.82918161246933	9.02825228244101	8.76059555415891	8.50287307254656	9.06611968834939	9.35312654125785	9.00328146161386	8.792578768604	0.346231100033877	0.0623353340563652	0.264262462346517
Merged-chr1-132140330-2	chr1	132140230	132140430	+	686.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008795)	promoter-TSS (NM_008795)	-645.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	3.18012000345016	3.21482234757767	3.18053338665719	2.87789364774223	3.35183879513056	2.9576971901049	3.38080505350166	3.17886151714628	0.465483550928223	0.423069152155985	0.71498264830502
Merged-chr4-101155743-4	chr4	101155656	101155856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 22 of 24)	intron (NM_146145, intron 22 of 24)	86718.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	7.28016450624838	7.36174155828075	7.51456143310421	7.50249883765009	7.17804751112411	7.2118667214709	7.33748915192729	7.3590320348501	-0.20509502247354	0.25459159589275	0.566033896737468
Merged-chr15-39784091-4	chr15	39784011	39784211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164466, intron 9 of 9)	intron (NM_001164466, intron 9 of 9)	-12934.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	7.74676078249843	8.12141902784997	8.06336374083979	7.73446546745423	8.26651504678722	8.30415774372931	8.05681067797116	8.03180486516859	0.318863363942926	0.0785315005330339	0.303249263627235
Merged-chr18-36472490-4	chr18	36472378	36472578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17983.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	7.58377449079791	7.92713277062201	7.9416309185243	7.58229603054926	7.392837207929	7.47819231915647	7.49410338268815	7.25040183648799	-0.474573524042617	0.0120393153380387	0.0901384691749506
Merged-chr1-171619213-4	chr1	171619117	171619317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-11807.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	7.46078310890667	7.74674384299783	7.59213773097289	7.71853155216651	7.60685354959738	7.4500625314235	7.83713193500828	7.74420857285168	0.0359168421020835	0.842892544929344	0.940323698985438
Merged-chr2-155819257-4	chr2	155819169	155819369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015528)	promoter-TSS (NR_015528)	-66.0	NR_015528	613262.0	Mm.330707	NR_015528	ENSMUSG00000074649	BC029722	-	cDNA sequence BC029722	ncRNA	8.11467395645129	8.15840457392723	7.90237721843916	7.81653848059938	8.05694004118044	7.73918464763077	8.00818998954105	7.94699726194226	-0.068051589496177	0.700104834238712	0.879044875360757
Merged-chr5-45668491-2	chr5	45668391	45668591	+	734.333313	f1_balb.idr|f1_c57bl6.idr	TTS (NR_073433)	TTS (NR_073433)	1217.0	NR_073433	69788.0	Mm.381492	NR_073433	ENSMUSG00000104986	1600023N17Rik	AV119442	RIKEN cDNA 1600023N17 gene	ncRNA	3.27492585061593	3.50762603961372	3.79621037650108	3.43137261159797	3.70498756198891	3.70797761544116	3.68143825151578	4.05136837682222	0.87126162827121	0.0797280980587178	0.305763270028097
Merged-chr13-5804403-3	chr13	5804312	5804512	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53680.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	5.74052759927047	5.55776181310729	5.50581151314298	5.43719292208805	5.74619168550595	6.04961379830083	5.63901401457485	5.44312995632681	0.302729581850369	0.277485979096352	0.589640102280779
Merged-chr11-103354226-4	chr11	103354129	103354329	+	961.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205236, intron 3 of 17)	intron (NM_001205236, intron 3 of 17)	9463.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	4.41045501779563	4.22717576820985	4.68482011072123	4.61347847300645	4.32620446423223	3.94116246843167	4.66210029998871	4.78272531993844	-0.0716122817567272	0.867564032264996	0.950342374382525
Merged-chr2-15049319-4	chr2	15049215	15049415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165942)	promoter-TSS (NM_001165942)	-3.0	NM_001355685	74455.0	Mm.478923	NM_028950	ENSMUSG00000026707	Nsun6	4933403D21Rik|4933414E04Rik|NOPD1	NOL1/NOP2/Sun domain family member 6	protein-coding	7.41404338980651	7.48288745199671	7.47503896457193	7.8930897985614	7.71621341183939	7.64292512792898	8.12200238007431	7.51754408365615	0.233553470607965	0.275129185403947	0.586927419764657
Merged-chr13-106945720-4	chr13	106945620	106945820	+	927.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1409.0	NM_025447	66254.0	Mm.9563	NM_025447	ENSMUSG00000021692	Dimt1	1500031M22Rik|AV111347|Dimt1l	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	protein-coding	4.75804231429967	4.7860703950731	4.7222897781648	5.25944277896108	4.44696824438593	4.46653636777517	4.45791230921031	4.28273449594671	-1.10286857082937	0.00359329281941658	0.0368110462214874
Merged-chr7-67373266-4	chr7	67373161	67373361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291191)	promoter-TSS (NM_001291191)	-403.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	6.95978499298508	7.22095379031267	6.85241405397676	6.99007501949872	7.21905788293886	7.26127475936207	7.20339712547261	6.59773980875786	0.117615223939916	0.59915288183028	0.826206032310386
Merged-chr6-85380678-4	chr6	85380576	85380776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6042.0	NM_001003955	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	7.11253896433062	7.37387828945503	6.89624193230216	7.35608015602948	7.08560789772221	7.26691380528533	7.10120755859904	6.93255656916204	-0.150583287307759	0.463830773537741	0.74503550302713
Merged-chr13-115230741-1	chr13	115230641	115230841	+	603.5	f0_balb.idr	Intergenic	Intergenic	-128777.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	3.30404438394985	3.32368126463062	3.30448929050928	3.14071612516982	3.21384127996806	3.10127908440538	3.39661595518421	3.24606939786491	-0.0713345980150317	0.894789952770848	0.96069135232764
Merged-chr1-87026207-4	chr1	87026124	87026324	+	914.287476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172157, intron 15 of 21)	Lx8|LINE|L1	63704.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	4.26479038612837	4.12834822312504	4.17557949319502	4.2421430294664	4.17384223929015	4.25302750553086	4.11068978301638	4.38649827966869	0.0651441387223923	0.867950501282634	0.950535454684971
Merged-chr6-33273116-4	chr6	33273025	33273225	+	959.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347089, intron 2 of 9)	B1F|SINE|Alu	23997.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	4.67931090285465	3.85561935391445	4.40513683982426	4.39511162285157	4.7116418210756	4.2395969763204	4.88068720117621	4.40234038285942	0.500421741705877	0.251325249500512	0.56275122991118
Merged-chr4-140957982-4	chr4	140957883	140958083	+	951.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045911)	promoter-TSS (NR_045911)	-81.0	NR_045911	100126227.0	Mm.404073	NR_045911	ENSMUSG00000087698	Gm13031	-	predicted gene 13031	ncRNA	4.70806709518615	4.86691672585204	4.63417250900047	4.13268277902885	4.37776892888608	4.46285889954859	4.40600336281477	4.87480601177876	-0.129840927970931	0.753167849231356	0.902768018969164
Merged-chr5-62846455-4	chr5	62846363	62846563	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 6 of 8)	intron (NM_001170705, intron 6 of 8)	32640.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	5.01245194926604	5.01455515137937	5.11132489473907	5.73462574000687	4.77899706493894	4.84478820293629	4.72833183836724	4.70504189860055	-1.00964729028716	0.00531014255749722	0.0497329785658019
Merged-chr11-68441156-4	chr11	68441050	68441250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	9025.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	5.2353602708118	5.48862045574933	5.38326502360131	4.84311075737463	5.49570836054672	5.09903375742533	5.24093087577731	5.16877500397063	0.0458015062359858	0.889600330700879	0.95860823232862
Merged-chr2-98666870-1	chr2	98666770	98666970	+	1000.0	f0_balb.idr	Intergenic	GSAT_MM|Satellite|Satellite	1199213.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	11.0488927700673	10.1514235515155	11.5961780775575	10.28174758702	10.4591142625676	10.9461275606354	10.2456507021104	11.2911527897368	-0.129103226785347	0.785721044031716	0.91662304050109
Merged-chr4-141766578-4	chr4	141766493	141766693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172338, intron 12 of 14)	intron (NM_172338, intron 12 of 14)	19918.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	6.28593847002509	6.42321326268544	6.26802033646631	6.60806730741409	6.25072672004988	6.30318940628942	6.2359891951153	6.33793496522323	-0.209577813987392	0.352707074633726	0.659679630621423
Merged-chr1-121327382-2	chr1	121327282	121327482	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178082, intron 1 of 5)	intron (NM_178082, intron 1 of 5)	296.0	NM_001271531	72999.0	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	3.41071469974816	3.35116889053811	3.63360374144933	3.47384832261063	3.81264770597196	3.75140998201051	3.6679465123264	3.34752099711113	0.610054043659148	0.222731443684821	0.530884419852054
Merged-chr9-65588021-5	chr9	65587926	65588126	+	796.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357526, exon 2 of 13)	exon (NM_001357526, exon 2 of 13)	866.0	NM_001357527	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	3.40049967447027	3.63395368905718	3.40090348123671	3.66362703666324	3.527650263749	3.64119540463916	3.56663407316403	4.22289269624571	0.703160287174255	0.182294677894962	0.47878218634963
Merged-chr9-113708106-5	chr9	113707952	113708152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164677, exon 1 of 18)	exon (NM_001164677, exon 1 of 18)	207.0	NM_001164678	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	5.27917186211487	5.27952540142307	5.37225233061191	5.13166203159669	5.41139783449978	5.761802781187	5.34546499711552	5.6582337747066	0.514554585995953	0.07209972408745	0.288492116522604
Merged-chr11-83291648-4	chr11	83291558	83291758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028363)	promoter-TSS (NR_028363)	-41.0	NR_028363	613254.0	Mm.383758	NR_028363	ENSMUSG00000093483	AA465934	-	expressed sequence AA465934	ncRNA	7.89851582811225	7.87686468473513	7.56784593949855	7.47900370302471	7.59408937722921	7.63141058811464	7.84799603325743	7.62445050371053	-0.0453711814483571	0.81058010430988	0.926854276252049
Merged-chr8-119837616-3	chr8	119837523	119837723	+	867.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	2956.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	3.91158062224789	4.04404286993965	3.91214614464383	3.55388719164482	4.15752149976464	3.87009762808479	3.89578604854321	4.3393308550486	0.620094066301025	0.17708556343358	0.472318856358482
Merged-chr1-64617744-4	chr1	64617639	64617839	+	950.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025964)	promoter-TSS (NM_025964)	-571.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	4.94588795244537	4.69236607989963	4.50441893725401	4.67506645161849	4.98553690029741	4.97755368655158	4.77994759295529	5.34643606660152	0.656681974441764	0.055868609775324	0.247408000053491
Merged-chr2-117342876-4	chr2	117342764	117342964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011246)	promoter-TSS (NM_011246)	13.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	6.08638558778557	5.94798035733845	6.02319693022804	5.8860823618574	6.34425250327372	6.34320814299085	6.13676459346247	6.16393267181255	0.426979317241432	0.0634602452218426	0.267375769726689
Merged-chr4-132488777-4	chr4	132488662	132488862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21694.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	5.51564368695057	5.76942811597468	6.05698438154486	5.88337618170717	5.87559575372644	5.43910092321249	5.751022350819	5.57000533354276	-0.235733755713888	0.396611072502928	0.695284556331027
Merged-chr15-83564351-4	chr15	83564259	83564459	+	834.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009775, intron 1 of 3)	intron (NM_009775, intron 1 of 3)	786.0	NM_009775	12257.0	Mm.1508	NM_009775	ENSMUSG00000041736	Tspo	Bzrp|IBP|PBR|Tspo1	translocator protein	protein-coding	3.80135901497606	4.05558051090981	3.95124642212201	3.64882961274416	4.01567505734448	3.9220471500951	3.73341274434212	3.85139753979837	0.0749310011394585	0.869152738045396	0.950890741040292
Merged-chr19-12000887-3	chr19	12000788	12000988	+	934.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35044.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	3.93524966305847	4.00714474638302	3.83767835699882	3.82823244989737	3.63352485687054	3.60671163464902	3.71684295431284	4.22645423770098	-0.234239455546984	0.624071287867168	0.839275735925487
Merged-chr4-108380415-4	chr4	108380317	108380517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099303, intron 1 of 2)	intron (NM_001099303, intron 1 of 2)	3238.0	NM_001099303	545667.0	Mm.380025	NM_001099303	ENSMUSG00000059816	Fam159a	Shisal2a	family with sequence similarity 159, member A	protein-coding	5.13206476712317	5.23446188931289	5.26363068104669	5.30129999090158	5.29976422807784	5.58231827583389	5.43671935782722	5.1633572720306	0.241531803614193	0.405418505862919	0.702273581691623
Merged-chr7-25689334-4	chr7	25689216	25689416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011577, intron 1 of 6)	CpG	2314.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	8.60785219509007	8.94135674509592	8.98352119498557	8.61651783987437	8.85507524267914	8.67018963031085	8.67210310484851	8.40267478162422	-0.166733719543888	0.348342381557259	0.656203091647814
Merged-chr5-127608738-4	chr5	127608635	127608835	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 2 of 7)	intron (NM_133895, intron 2 of 7)	8657.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	4.62644836913258	4.53122564012887	4.84113660457467	4.62511344232869	4.63880033950495	4.39856219427857	4.48428292954026	4.77101073355539	-0.15603588311671	0.662886696957478	0.860308363619954
Merged-chr14-32932650-3	chr14	32932551	32932751	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178791, intron 7 of 7)	intron (NM_178791, intron 7 of 7)	-58731.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	5.20941061130041	5.45401690760692	4.96542629774216	5.24086494661238	5.47598679723001	5.25220223166755	5.11995467647864	5.32795685702079	0.136140724972254	0.653793295968371	0.855227570363008
Merged-chr6-86447213-6	chr6	86447123	86447323	+	937.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243741, intron 3 of 9)	intron (NM_001243741, intron 3 of 9)	8577.0	NM_001243741	232196.0	Mm.404040	NM_146170	ENSMUSG00000046679	C87436	-	expressed sequence C87436	protein-coding	3.88736875437916	4.31119984959511	4.1660592316673	3.50053015437384	3.85156765372926	4.25045865236726	3.70858187859502	3.72094753565147	-0.268391278178722	0.600641536313928	0.826881168058353
Merged-chr15-31342176-4	chr15	31342061	31342261	+	986.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	25598.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	5.81054342742387	5.55559807603164	5.60108429926625	5.99656282153665	5.09890001200133	5.42953449343718	5.29040939211358	5.10661465350842	-0.938957068271955	0.00136363396981785	0.0173016225200829
Merged-chr10-19008813-3	chr10	19008733	19008933	+	981.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166402, intron 1 of 7)	intron (NM_001166402, intron 1 of 7)	3130.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	3.98009228669796	4.27495371754756	3.77402038540838	3.36300680841491	4.19247031739052	4.00478642884944	3.70258904717719	4.02508450925028	0.292586773910501	0.570768114188663	0.810192301084349
Merged-chr5-128981847-2	chr5	128981718	128981918	+	794.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8418.0	NM_001359022	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	3.13666341344325	3.12640369898096	3.35566651100525	2.80891415722162	2.89787438696359	3.1239214373944	3.3407140581217	3.07459409506799	0.0105382626861522	0.986191747867857	0.994910715477668
Merged-chr2-11637288-4	chr2	11637189	11637389	+	967.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5503.0	NM_008367	16184.0	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	5.02907230742725	4.63867932842092	4.92444067863224	5.21755236398913	5.0749886887237	4.98641560368121	5.32801850638263	4.99234666716403	0.226856161874634	0.500465208813488	0.768850577358824
Merged-chr7-142442847-4	chr7	142442765	142442965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009405, intron 1 of 5)	intron (NM_009405, intron 1 of 5)	397.0	NM_009405	21953.0	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	7.11378048333915	6.66800120479197	6.70153862163201	7.00110335754113	7.03422933368212	7.0133696762869	7.07921699665586	7.24952011088488	0.284806281380519	0.169104423213258	0.46161486940974
Merged-chr16-26581627-4	chr16	26581547	26581747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134103)	promoter-TSS (NM_134103)	-58.0	NM_001159318	16180.0	Mm.253424	NM_008364	ENSMUSG00000022514	Il1rap	6430709H04Rik|AI255955|AV239853|IL-1RAcP	interleukin 1 receptor accessory protein	protein-coding	7.92326327963414	7.71120086770251	8.18233930609258	8.25571107830536	7.68745395224366	7.5057983545489	7.94754253966702	7.34458856629226	-0.516182827570617	0.0144829914403603	0.102310921767904
Merged-chr8-71288691-4	chr8	71288531	71288731	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	B3|SINE|B2	15917.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	3.47239490716285	3.63573620394134	3.2367132434438	2.94575909736465	3.62228317652303	3.35072784656978	3.40421423684963	3.57446251383203	0.51734244426097	0.364034621364014	0.668959979169087
Merged-chr18-60502451-1	chr18	60502351	60502551	+	629.75	f0_balb.idr	promoter-TSS (NM_134133)	promoter-TSS (NM_134133)	-468.0	NM_134133	106878.0	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	3.69119220810999	3.40521730861162	3.73461026557335	3.17833777768943	2.90176979684681	3.33781267082091	3.08064143808243	3.08920165187534	-1.56251198116569	0.0108727258754114	0.0838237779097641
Merged-chr15-79270501-4	chr15	79270393	79270593	+	870.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177580, intron 7 of 13)	CpG	15016.0	NM_177580	207495.0	Mm.309647	NM_177580	ENSMUSG00000018126	Baiap2l2	BC048937	BAI1-associated protein 2-like 2	protein-coding	4.39301796654612	4.20260239208303	4.13970025475297	4.2748584323295	4.29453303115915	4.35680350347784	3.68614074130106	3.93511216238697	-0.389500606062493	0.382943325171101	0.684806264846199
Merged-chr13-110541518-4	chr13	110541429	110541629	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	146485.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	4.98391062439305	5.12819615836043	5.15153141709339	4.8554177850657	5.30857081540382	5.3542503870499	4.96077658286783	4.83052875873629	0.216940158797064	0.506708293486759	0.772428193135889
Merged-chr5-34243512-3	chr5	34243432	34243632	+	647.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 1 of 12)	intron (NM_001015039, intron 1 of 12)	44792.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	3.35870186621518	3.3509459516523	3.77149377830849	3.78592353429071	3.27074084049816	3.59095393271433	3.51548810578238	3.23035459236614	-0.617741699867389	0.257079307445773	0.568810942638566
Merged-chr2-160620228-7	chr2	160620099	160620299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25698.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	7.07911802089269	7.16222164169119	7.21773569812907	6.90249277080112	7.09833090061699	7.55655235875856	6.82096074364663	7.35587155727251	0.1959407169633	0.378017584251248	0.680636285273186
Merged-chr14-19715117-5	chr14	19715021	19715221	+	723.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36136.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	3.10389213186945	2.99219502381629	3.15862768436058	3.09177556262427	2.9301104746337	3.0335302353012	2.78425613506994	2.85936595766235	-0.789529957342113	0.187664488469329	0.48610501726011
Merged-chr10-127421149-4	chr10	127421037	127421237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001168293, exon 1 of 24)	5' UTR (NM_001168293, exon 1 of 24)	270.0	NM_001359243	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	4.88836586287963	5.15594946403726	4.25039992584075	4.47870666377865	5.18679167291031	5.16646680659448	5.23560887149746	4.73261576321386	0.709940664625944	0.0696065711466883	0.282260931330834
Merged-chr17-87283997-4	chr17	87283875	87284075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 1 of 19)	intron (NM_028639, intron 1 of 19)	1089.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	6.53654286144287	6.84248292008808	6.34354968595741	6.4642860482407	6.59954879044009	6.50173850004758	6.71368747272498	6.48300300592154	0.0293524611330126	0.895316877012618	0.960823579379062
Merged-chr4-44065864-4	chr4	44065762	44065962	+	890.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190414, intron 2 of 11)	intron (NM_001190414, intron 2 of 11)	6855.0	NM_001357539	50798.0	Mm.256718	NM_015828	ENSMUSG00000028479	Gne	2310066H07Rik|DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding	4.8369007290528	4.52472969513592	4.5324313021358	4.52752490284059	4.91731445566865	4.62006009641664	4.59458680259386	4.76482285311939	0.291619070078152	0.407010778625598	0.703457348417477
Merged-chr4-124658848-2	chr4	124658748	124658948	+	905.8000490000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_011141, exon 1 of 1)	exon (NM_011141, exon 1 of 1)	1202.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	2.98913305336296	3.01625336972588	3.12595708187983	2.72654829856267	3.01247978812827	3.36937416873079	3.17678250830068	3.9918794507435	1.74589912246535	0.00555649605557023	0.0513436626649083
Merged-chr2-135503802-4	chr2	135503704	135503904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79416.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	5.5537858052782	5.41868554969095	5.34590222913343	5.88919726614367	5.48254287092947	5.95383980405249	5.68098708222409	5.65632898493387	0.175271585261194	0.55280272703027	0.799873237323185
Merged-chr17-48270906-4	chr17	48270816	48271016	+	919.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033922, intron 4 of 5)	intron (NM_001033922, intron 4 of 5)	6621.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	4.05227830898089	4.61823751784314	4.49288381462369	4.2796457189119	4.22013545456688	4.32802226722329	4.13598757254789	3.94157718758674	-0.519759716690523	0.215952788528547	0.522387992755032
Merged-chr6-54682255-2	chr6	54682157	54682357	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289741, intron 1 of 4)	CpG	633.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	3.68172295501534	3.58467394912033	4.00078668146909	3.61204180043408	3.24431435789569	3.85362969644384	3.38254248984169	3.62739106901917	-0.583819279367338	0.270371030804231	0.582238816495154
Merged-chr7-106759004-4	chr7	106758903	106759103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5617.0	NM_146602	258595.0	Mm.377585	NM_146602	ENSMUSG00000059087	Olfr698	MOR283-3	olfactory receptor 698	protein-coding	5.52967150005446	5.47709804532981	5.50394721642896	5.3837667913506	5.64763596838235	5.343851479873	5.20905658981709	5.47284978194082	-0.046475461766917	0.869684585171277	0.951055924778477
Merged-chr17-69197892-4	chr17	69197786	69197986	+	926.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	38530.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	3.88255946670313	3.73851682060766	3.88310157637088	4.023792941295	4.25571152646467	4.24798760665122	3.75885286809878	4.16347656255207	0.610500384898402	0.169271357914545	0.461822724438512
Merged-chr4-123305968-4	chr4	123305859	123306059	+	717.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17720.0	NM_022033	64059.0	Mm.270287	NM_022033	ENSMUSG00000076436	Oxct2a	Oxct|Oxct2|Scot|Scot-t1	3-oxoacid CoA transferase 2A	protein-coding	3.66607771677992	4.27811964742511	4.44976922470344	3.84205370762316	3.96049771625793	3.96586705353002	3.98278358775665	3.99750759520194	-0.303520488747875	0.519933002283461	0.780403845673621
Merged-chr8-122566838-4	chr8	122566733	122566933	+	885.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1182.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	3.72180666495263	3.72641708360001	3.60592824057272	3.58877042001054	3.90179171539249	3.89808774749255	3.95708495508362	4.29369738511577	1.03818648046607	0.0201772137833377	0.128839108941421
Merged-chr16-95707173-6	chr16	95707035	95707235	+	893.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011809, intron 2 of 9)	intron (NM_011809, intron 2 of 9)	4728.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	3.91525691359672	3.82685741109514	3.43115652218201	3.11147137867696	3.966171245417	4.04021016929074	3.65362850861862	3.49277592473121	0.589379797893558	0.293279717951104	0.605875232443865
Merged-chr3-88464604-4	chr3	88464511	88464711	+	962.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-3429.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	4.84270017219707	4.94472392269907	4.65069464100254	4.67264099329757	4.6318130555337	4.94304474267015	4.78435146873093	4.94320154635032	0.0942670372021219	0.780665979368539	0.914613598929882
Merged-chr2-158133246-4	chr2	158133144	158133344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 4 of 12)	intron (NM_009373, intron 4 of 12)	13148.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	8.87124823004157	9.00821247893256	9.07594149383106	8.99220746959593	8.77659386180852	8.78335062526175	9.07142309195025	8.86318424466901	-0.138070598061548	0.358072302901844	0.664127692322234
Merged-chr5-135994838-4	chr5	135994733	135994933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023742)	promoter-TSS (NM_023742)	33.0	NM_001256098	74198.0	Mm.275574	NM_023742	ENSMUSG00000004947	Dtx2	2610524D08Rik|AA408415|AU022494|Deltex2	deltex 2, E3 ubiquitin ligase	protein-coding	6.00909344043954	6.32269672029592	5.87078177395304	5.97835077456893	6.13243920864522	6.0720604246165	6.40222290926916	5.8666164825197	0.120526190025254	0.637326563844735	0.846727967430494
Merged-chr5-16502107-4	chr5	16501993	16502193	+	987.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51402.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	5.29999530716582	4.8237178299925	5.01482759606556	5.64872514557916	4.84149517314736	5.19048887414217	5.15604776644416	5.08073125106024	-0.351887449714458	0.320862656559565	0.632615451533248
Merged-chr18-34163244-3	chr18	34163136	34163336	+	769.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57748.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	3.20579617390331	3.20370445592619	3.26479665664084	3.38198789414297	3.45218996101094	3.18879667481603	3.30808044418594	3.20462305230135	0.0945639729393494	0.860515503464441	0.947257744561567
Merged-chr15-82236751-3	chr15	82236656	82236856	+	813.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178269, intron 4 of 4)	intron (NM_178269, intron 4 of 4)	7580.0	NM_001080158	66570.0	Mm.23596	NM_025639	ENSMUSG00000068101	Cenpm	2610019I03Rik|AI853711|Pane1	centromere protein M	protein-coding	4.10438557216426	3.81501336329406	3.79154965744142	3.76545734913295	3.73833354166178	3.80421450765837	3.72465379730215	3.50721778359788	-0.506616401222255	0.280014160213765	0.592113362937987
Merged-chr5-124352410-3	chr5	124352326	124352526	+	703.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013812, intron 1 of 3)	intron (NM_013812, intron 1 of 3)	2202.0	NM_013812	13445.0	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	3.43703337204632	3.44235154905099	3.48917296183371	3.46711711858082	3.34833638117762	3.1113949005382	3.25719045262147	3.32569721364555	-0.686756378139574	0.193347440116331	0.493529716199714
Merged-chr13-95563795-4	chr13	95563654	95563854	+	789.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38514.0	NM_007974	14063.0	Mm.1614	NM_007974	ENSMUSG00000021678	F2rl1	Gpcr11|PAR-2|Par2	coagulation factor II (thrombin) receptor-like 1	protein-coding	3.80815482912888	3.99361279931336	4.00475062612461	3.74990015484946	3.80076095701222	4.03241331696188	3.62629989597841	4.04683305630569	-0.00723109882525464	0.987304044547753	0.995258250959001
Merged-chr2-167885769-4	chr2	167885688	167885888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46539.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	6.38455133879274	6.39753721779559	6.14027309282504	5.95539697452433	6.36017989346845	6.50836125946728	6.435452192112	5.90851116700575	0.154543714899006	0.546943803974757	0.796638012378211
Merged-chr10-111163902-3	chr10	111163791	111163991	+	923.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175489)	promoter-TSS (NM_175489)	-911.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	3.42245409351561	3.19992726342653	3.26113553698532	3.34357499105992	3.37127504491309	3.18483040459955	3.24912131285347	3.13929352550525	-0.240349651051798	0.655342395177678	0.856042582194343
Merged-chr13-94838293-3	chr13	94838193	94838393	+	928.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009321, intron 3 of 3)	intron (NM_009321, intron 3 of 3)	-37334.0	NM_011021	18420.0	Mm.42051	NM_011021	ENSMUSG00000021685	Otp	-	orthopedia homeobox	protein-coding	4.07886002695451	4.07354197654291	3.87708688547681	4.57625091677391	4.01488189835561	3.75731633172231	3.86188876142527	4.29153702225107	-0.51259741171726	0.284051831141004	0.596035490823689
Merged-chr10-117829150-2	chr10	117829050	117829250	+	947.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	16824.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	2.87908709118383	3.10531819071203	3.00805082677058	2.89802932725255	2.91301133021373	3.11767461573725	3.11276563335854	3.12341891401326	0.386029919710241	0.503675875889664	0.770507049123075
Merged-chr15-99026426-4	chr15	99026343	99026543	+	955.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3448.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	5.00814322482319	5.19139605179906	5.13478065078344	4.46249988067505	5.02678763181373	4.89000300037768	4.88206914136138	4.75042503075333	-0.13749536050643	0.707672451371443	0.882529695648857
Merged-chr5-124579097-4	chr5	124579019	124579219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181410)	promoter-TSS (NM_181410)	12.0	NM_145371	209354.0	Mm.28839	NM_145371	ENSMUSG00000029388	Eif2b1	D5Ertd406e|EIF2BA	eukaryotic translation initiation factor 2B, subunit 1 (alpha)	protein-coding	6.9280673533664	6.69492672825904	6.3433739901658	6.48665413110464	6.61219271689911	6.94780317888968	6.6361419527173	6.78105054431805	0.172250887881	0.450565497836442	0.735357832948579
Merged-chr17-5941538-4	chr17	5941397	5941597	+	951.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001113353, exon 1 of 27)	exon (NM_001113353, exon 1 of 27)	217.0	NM_001113352	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	4.66773001430073	4.6576096475424	4.37085979418122	4.60660248482894	4.66000084239052	4.76258774681238	4.68360469668457	4.5463164922496	0.172793147238338	0.620176961165394	0.837084318577183
Merged-chr17-57017564-4	chr17	57017462	57017662	+	921.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6274.0	NM_133801	98053.0	Mm.24632	NM_133801	ENSMUSG00000002658	Gtf2f1	2810405L04Rik|C76800|RAP74	general transcription factor IIF, polypeptide 1	protein-coding	4.67566678409635	4.73987482792092	4.40712164167219	4.94693221967759	4.71799868911941	4.48824821191481	4.87544031785009	5.34770660459598	0.358924882128233	0.360276581758557	0.665769946855816
Merged-chr5-88500060-4	chr5	88499964	88500164	+	967.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017468, intron 9 of 9)	intron (NM_017468, intron 9 of 9)	12089.0	NM_017468	13801.0	Mm.8014	NM_017468	ENSMUSG00000029286	Enam	abte	enamelin	protein-coding	4.65154513188517	4.63059770553193	4.14724114945885	4.71993192056424	5.31067063267166	5.18804584453334	4.71150118210076	5.10473289326017	1.07228487357157	0.00422976428010126	0.0418909686508038
Merged-chr8-25597580-4	chr8	25597487	25597687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173012)	promoter-TSS (NM_173012)	-100.0	NM_173012	270035.0	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	7.35558638923306	7.47092335352218	7.29241208309566	7.46101798183551	7.77944589082806	7.66336388418673	7.81393324687013	7.56313371457821	0.408186603594968	0.018345287371871	0.120913753747216
Merged-chr7-67958240-4	chr7	67958144	67958344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 1 of 20)	intron (NM_010513, intron 1 of 20)	5987.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	7.2506727086691	7.38232134012416	7.24139126291447	7.62198839685195	6.67037827908213	6.82200966143016	7.05990999969781	6.8984706985346	-0.728821847765357	0.000390140379852144	0.00630701841869084
Merged-chr11-83535908-3	chr11	83535881	83536081	+	928.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5463.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	4.26378801439706	3.9330293235878	3.57161200753342	3.55502412845553	4.05183835219239	3.86416427673504	3.61746866274772	3.44219936729097	-0.254934644870239	0.634989562920686	0.845508250522306
Merged-chr2-117123023-5	chr2	117122935	117123135	+	978.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277256, intron 1 of 4)	intron (NM_001277256, intron 1 of 4)	1964.0	NM_033524	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	4.0127925942546	3.81083396603639	4.27804782821957	3.79192122088192	4.35849717324555	4.03442568693401	3.78652195242721	4.23485501160445	0.398436711182033	0.381894792966628	0.684104428553457
Merged-chr10-116893982-3	chr10	116893882	116894082	+	911.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033333, intron 1 of 24)	intron (NM_001033333, intron 1 of 24)	2897.0	NM_001033333	237558.0	Mm.336386	NM_001033333	ENSMUSG00000034057	Myrfl	Gm239	myelin regulatory factor-like	protein-coding	4.41357228958207	3.7178225239238	3.80833241290082	3.98087643835099	4.36645875465777	3.61730171799536	3.94768877440859	3.86033371797031	-0.0495225085774179	0.922578042578865	0.971307870262705
Merged-chr3-97297955-4	chr3	97297855	97298055	+	846.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70591.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	3.59848769588226	3.56418207087369	3.2903571352288	3.819063482372	3.73700780567468	3.71569487790627	3.63828081375191	3.89032444950256	0.457787630154003	0.364322499336954	0.669235191019446
Merged-chr1-170632556-4	chr1	170632462	170632662	+	828.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11970.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	4.4730324286661	4.4413716593361	4.22049298813278	4.06341992898658	4.40763140327816	4.34730311482496	4.29128840546309	4.07000894753441	-0.019799062440721	0.961041584997288	0.98607960708679
Merged-chr11-43411610-4	chr11	43411523	43411723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14358.0	NM_013917	30939.0	Mm.6856	NM_013917	ENSMUSG00000020415	Pttg1	AW555095|C87862|Pttg|Pttg3	pituitary tumor-transforming gene 1	protein-coding	6.98741912335268	6.93544926914469	6.7751789197283	6.84343690758559	6.97811246752309	6.93733557432965	6.9034821331719	6.63227600132816	-0.0162862850888913	0.935075032363542	0.976465285317276
Merged-chr9-63960568-4	chr9	63960505	63960705	+	985.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	61454.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	4.78820925957861	4.91166264291269	4.93250142498444	4.55151563624079	4.76699816396482	4.76172674038268	4.83944300448187	5.14631404681952	0.196001313079089	0.569464093167337	0.809366519988776
Merged-chr5-139015198-4	chr5	139015113	139015313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20260.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	7.62976934080349	7.44789976160251	7.53717732964324	7.5324978769588	7.3204274392789	7.59335419377719	7.20207430451868	7.16382650062729	-0.278614803285209	0.133426539685143	0.406761085916653
Merged-chr11-116433388-2	chr11	116433288	116433488	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003376)	promoter-TSS (NR_003376)	-706.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	3.13379294000724	3.13367969483509	3.13418705510405	2.86230649433349	3.09736734134848	3.24791795924805	3.18310112823982	3.68332857099544	0.977237798759308	0.0912703856691748	0.330125249329041
Merged-chr9-113664621-4	chr9	113664537	113664737	+	984.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164678, intron 12 of 17)	intron (NM_001164678, intron 12 of 17)	43622.0	NM_001164678	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	5.64344377011534	5.12343260520964	5.59439168620216	6.18792677344496	5.30820465151389	5.042364601296	5.591013538698	5.27336416691736	-0.674442195110728	0.054261361104337	0.243261914848246
Merged-chr7-43512162-4	chr7	43512022	43512222	+	915.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6184.0	NM_028737	74054.0	Mm.195732	NM_028737	ENSMUSG00000013353	4931406B18Rik	4930538L19Rik	RIKEN cDNA 4931406B18 gene	protein-coding	3.88168099705789	4.18603902942193	4.45580452293294	3.64593539619448	3.56856587978892	3.8970192101699	3.86584368990481	3.82726429019988	-0.780224141532267	0.11856226238035	0.380930905207679
Merged-chr12-91751507-4	chr12	91751413	91751613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	Lx7|LINE|L1	34923.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	5.57129022900603	5.38456007406662	5.67358217460363	5.70002208767543	5.80140210137007	5.24155578417932	5.34612590343857	5.59441851935456	-0.108223622200853	0.711461515826305	0.884430620073572
Merged-chr8-91357711-4	chr8	91357644	91357844	+	745.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011936, intron 1 of 8)	intron (NM_011936, intron 1 of 8)	44219.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	3.73297796986438	3.30072840881896	3.21734469966697	3.52541554796143	3.79202404577587	3.64513053637942	3.62012319751516	3.63312739774261	0.683801289657544	0.179708075791095	0.475928644273867
Merged-chr15-15102379-3	chr15	15102281	15102481	+	806.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1675720.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	3.54074458638013	3.55262687558771	3.83690199080567	4.07649570539868	3.39846172492854	3.19430408324486	3.41314138014617	3.59349385990725	-1.22557292866571	0.0245083880641779	0.146398334509913
Merged-chr7-128180272-3	chr7	128180147	128180347	+	920.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029872, intron 5 of 30)	intron (NM_001029872, intron 5 of 30)	6301.0	NM_001029872	381924.0	Mm.334257	NM_001029872	ENSMUSG00000070369	Itgad	Cd11d	integrin, alpha D	protein-coding	3.80402519981627	3.81799539135867	3.85255567314673	3.65271851956026	3.59057778277916	3.52241914843947	3.68799324766084	3.89634957312785	-0.293150347046062	0.53359193452073	0.788821249359906
Merged-chr8-13292547-4	chr8	13292419	13292619	+	929.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172282, intron 2 of 12)	intron (NM_172282, intron 2 of 12)	-4393.0	NM_001042650	102323.0	Mm.368890	NM_001024504	ENSMUSG00000038506	Dcun1d2	AW495713|mFLJ10704	DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)	protein-coding	4.06032007282305	4.52172713599945	3.95643968842445	4.23919114795814	4.40693709381283	4.07916539247577	4.18489302046899	4.05855046523077	-0.0479177058169409	0.910983573416083	0.966904162861598
Merged-chr17-56074665-4	chr17	56074567	56074767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024432, intron 2 of 11)	CpG	4666.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	6.88687348097156	7.04488805578023	6.69774525006412	6.64095237017373	7.05236481760413	7.2297062412602	7.23496531677231	6.97483291241061	0.423544885347575	0.0389802449789773	0.198387472838076
Merged-chr1-131691619-4	chr1	131691536	131691736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145509, intron 1 of 5)	intron (NM_145509, intron 1 of 5)	2941.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	7.65886303481225	7.40909612903734	7.89511851397103	8.09297069222189	7.75482377691739	7.6822337914141	8.10770755798672	7.91801944925178	0.100855667290227	0.632569685065469	0.843983535085475
Merged-chr4-59786868-4	chr4	59786773	59786973	+	806.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3018.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	3.72221967024767	3.72684465377701	3.97447395506315	3.52544000427005	4.19851541356366	3.52864100952627	4.00113443084441	4.01683225707587	0.653079267313761	0.177012810671308	0.472266383701526
Merged-chr6-122863069-4	chr6	122862969	122863169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6912.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	7.95230439932296	8.18797591066647	8.14836055098503	8.16719671831726	7.47257567425665	7.40671245052794	7.42298636508072	7.61536215680968	-0.832754882790847	6.77491716374916e-07	2.44837949111197e-05
Merged-chr8-26697801-4	chr8	26697696	26697896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126627.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	6.96489249157433	6.72631547084929	7.09322220178844	7.2542618332787	7.15659914715729	7.4073738738418	7.50768693062318	7.45256654868186	0.472036866553288	0.0242515724468673	0.145520869234743
Merged-chr5-105496387-4	chr5	105496290	105496490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23081.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	6.77738306318633	6.56660104497482	6.73845167084871	6.87539986417865	6.0894331078835	6.29714210583823	6.34592308232526	5.87007498989674	-0.872143113715034	0.000152346208423935	0.00288908664937909
Merged-chr14-11162094-4	chr14	11161990	11162190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308285)	promoter-TSS (NM_001308285)	-55.0	NM_001308285	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	6.04431840237608	5.53221284902132	6.06483746228466	6.63515647540569	5.24281532079494	5.50927234073911	5.43008032082677	5.48436626221043	-1.20246597288952	0.0001985462800788	0.00361802691154844
Merged-chr9-70943209-2	chr9	70943109	70943309	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324472, intron 1 of 9)	MTEa|LTR|ERVL-MaLR	-8401.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	4.92650004082863	4.54443253920893	4.71217302487991	4.69308972916038	4.75174811644759	4.8466282705254	4.83619819544128	4.82108662163021	0.189991224751971	0.569454995611845	0.809366519988776
Merged-chr12-28751801-4	chr12	28751636	28751836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201357)	promoter-TSS (NM_201357)	-92.0	NM_201357	380752.0	Mm.273724	NM_201357	ENSMUSG00000036613	Eipr1	D12Ertd604e|Tssc1	EARP complex and GARP complex interacting protein 1	protein-coding	7.37172666751047	7.37373361435183	7.52725024350527	7.27929005960468	7.02155577118347	6.86106591424415	7.24649186917805	6.86341316411817	-0.510566818959088	0.00874634533846455	0.0716735108043482
Merged-chr6-108783700-4	chr6	108783584	108783784	+	994.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026011, intron 1 of 6)	CpG	625.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	4.95355071286724	4.80131612698706	5.27597692591216	5.12318557653013	4.98713563965791	5.05571646569898	5.22111921339138	5.24361207643187	0.139749362058974	0.659169702877885	0.858145103575869
Merged-chr6-90490150-1	chr6	90490050	90490250	+	582.5	f0_balb.idr	Intergenic	Intergenic	27574.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	3.37161987014992	3.10024834004289	3.37210601651508	3.18252223324155	3.08084103093791	3.06289325714706	3.13926824293499	3.31852474550422	-0.401840771170164	0.472223570056145	0.750447623040696
Merged-chr7-81199265-3	chr7	81199149	81199349	+	877.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-14555.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	3.16981225438004	3.05492401197154	3.32839699386066	3.05565333489405	2.9175193092938	3.09952144438974	3.21187350088431	2.78005473890366	-0.581109491512652	0.336139776959372	0.646244323954596
Merged-chr16-92039701-4	chr16	92039588	92039788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18634.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	6.68288498648936	6.58868333045803	6.27264804643883	6.10509121885631	6.45225962964154	6.39008644874215	6.5481715333273	6.22864178242956	-0.0120716673598682	0.960737336316552	0.986018439623899
Merged-chr13-93095784-2	chr13	93095684	93095884	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023821, exon 2 of 13)	exon (NM_023821, exon 2 of 13)	951.0	NR_046182	408254.0	Mm.474857	NR_046182	ENSMUSG00000114968	A630019I02Rik	-	RIKEN cDNA A630019I02 gene	ncRNA	3.50498727445513	3.79175584355575	3.66368882862731	3.15538508438743	3.42843632946617	3.56457605888805	3.59790132183312	3.5035376719149	-0.0622121587971194	0.907193010986233	0.965636693469353
Merged-chr5-100671581-3	chr5	100671484	100671684	+	856.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027978, intron 1 of 6)	intron (NM_027978, intron 1 of 6)	2672.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	3.87897851157716	3.83669287062694	3.73563564995539	3.54172752234197	3.74018417994018	3.63057816469946	3.56011857932319	3.68172954224718	-0.261958613856346	0.582207387012189	0.816501953640427
Merged-chr9-66646481-3	chr9	66646376	66646576	+	736.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53361.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	3.55659283341726	3.88590065870886	3.11819285045953	3.38771553534357	3.69864976144399	3.50098131280673	3.6439233543958	3.38452261419311	0.157314721314716	0.777007714726717	0.913034573074491
Merged-chr15-85336558-6	chr15	85336491	85336691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016843, intron 1 of 11)	CpG	210.0	NM_016843	54138.0	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	5.47328093674308	5.2485487937352	5.73900392798864	5.55842477413317	5.67607215853022	5.88859133125669	5.66142480395249	5.82691488975603	0.412244320992037	0.128462037130273	0.398822320447318
Merged-chr1-184808366-3	chr1	184808273	184808473	+	951.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290273, intron 1 of 6)	intron (NM_001290273, intron 1 of 6)	2927.0	NM_001290273	66112.0	Mm.272457	NM_001081361	ENSMUSG00000026621	Marc1	1300013F15Rik|Mosc1	mitochondrial amidoxime reducing component 1	protein-coding	3.55990929341569	3.36893771645794	3.36146375922665	3.04879701633383	3.11415471878212	3.17076711052121	3.11524471681277	3.30458778223061	-0.607047068983901	0.287661515288367	0.599503981867736
Merged-chr18-33816791-3	chr18	33816625	33816825	+	981.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013512, intron 18 of 23)	intron (NM_013512, intron 18 of 23)	21833.0	NR_038151	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	3.16659971923269	3.23930092124429	3.61940895814158	3.26155221024314	3.34381823759236	3.3460296777897	3.69405899335958	3.51818811855295	0.52504493221491	0.32498624493108	0.636488090877592
Merged-chr7-38029412-3	chr7	38029326	38029526	+	912.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-9874.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	4.68292705327407	4.4025811285397	4.55741400260083	4.36589955710334	3.53142606841408	3.60084887076111	3.67229339242933	3.68397241161683	-2.58051558872667	1.37415778884514e-07	5.72329884448265e-06
Merged-chr7-105628812-4	chr7	105628704	105628904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018880, intron 1 of 11)	intron (NM_018880, intron 1 of 11)	4767.0	NM_018880	55992.0	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	6.95719619701017	6.96749321185917	6.63130899658658	6.70198665453623	6.89952164528851	6.75930383023192	7.05334801922843	6.87607460084891	0.119376576552251	0.561153788335887	0.804851502205657
Merged-chr9-63092148-4	chr9	63092095	63092295	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54785.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	4.80286675391341	4.13446370717861	4.44087308553833	4.35774474864447	4.44617728152154	4.38879334552724	4.46155232043093	4.43804050974039	-0.0281523120788807	0.942631774676365	0.979213304897811
Merged-chr1-16104837-4	chr1	16104737	16104937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011291)	promoter-TSS (NM_011291)	-404.0	NM_011291	19989.0	Mm.319659	NM_011291	ENSMUSG00000043716	Rpl7	Rpl7a|Surf-3	ribosomal protein L7	protein-coding	6.89099176826368	6.86306954628691	7.28160671906238	7.21933811310189	7.15210366175027	7.14954679426351	7.01263398519688	7.05534373418322	0.015437470059536	0.938988033851746	0.977881364615113
Merged-chr6-54110827-2	chr6	54110726	54110926	+	589.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	MIR|SINE|MIR	70894.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	3.4077013621285	3.08439821336082	3.4082360808262	3.08185049560028	3.20759799065152	3.13050004474733	2.80380177934034	2.80982059958605	-0.978469528669286	0.126409544898536	0.39522555549209
Merged-chr1-153543181-3	chr1	153543079	153543279	+	844.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028749, intron 2 of 11)	intron (NM_028749, intron 2 of 11)	6535.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	3.09985238891714	2.93358372699948	3.20340562275395	3.18756755668685	2.64351417627358	2.76116153798823	2.64932825358001	2.8634895780786	-1.85747908318567	0.00561837034729196	0.0517816888449947
Merged-chr9-64806485-4	chr9	64806427	64806627	+	743.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4484.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	3.20680096949206	3.03208426357347	3.03991363790384	2.62992327464862	3.01998032486348	2.95738870942128	2.76945986271699	3.20532782087157	0.0371703206101279	0.954230448533561	0.983723210893915
Merged-chr1-167342029-4	chr1	167341908	167342108	+	943.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7983.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	5.28764712967367	4.96592388421295	4.85605417237695	5.24156858216662	4.56422840689926	4.65526445110905	4.75768978272643	4.81546273552261	-0.837521049688213	0.0133639026681825	0.0969059930744253
Merged-chr9-40731866-1	chr9	40731766	40731966	+	603.5	f0_balb.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	45902.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	3.26817347103462	3.08514106149404	3.36191054960655	3.05232621030542	2.60026767644874	2.6885567972387	2.65368091751256	2.73408231069616	-2.74623804170169	0.000230082404603304	0.00407948297877465
Merged-chr12-34297218-4	chr12	34297133	34297333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 16 of 27)	intron (NM_001271386, intron 16 of 27)	231656.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	5.81019688414034	5.58272163027593	6.26384722627322	6.48421591009112	5.74612461888091	5.45026605685931	6.0859921036506	6.01210529205224	-0.395793899210669	0.212697298770751	0.517670706102327
Merged-chr2-122619705-3	chr2	122619587	122619787	+	904.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8410.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	5.46517672675978	5.22923655754931	4.78007813157742	5.15568501249226	3.67591091217464	3.92346948354688	3.77543490850825	3.78770605028903	-3.68762712236932	1.9510703411356e-13	2.39853602438154e-11
Merged-chr11-55454258-2	chr11	55454158	55454358	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 2 of 3)	PB1D10|SINE|Alu	6950.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	3.09934757853409	3.14838246164106	3.09972836689256	2.87748864543779	3.30548084735446	3.27126768579941	3.20412222143975	3.09818830567534	0.690458522309545	0.215162455268775	0.521150454404197
Merged-chr5-104042916-4	chr5	104042860	104043060	+	899.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3904.0	NM_028794	74167.0	Mm.241484	NM_028794	ENSMUSG00000029310	Nudt9	1190002C07Rik|ADPR-PPase|AI462474	nudix (nucleoside diphosphate linked moiety X)-type motif 9	protein-coding	4.23000222212087	3.72305134437662	3.76596076048398	3.61531522993178	3.78293488691537	4.2342298151338	3.80506215956167	4.06193851962744	0.372581320376355	0.435867176393559	0.724865609157659
Merged-chr3-33800106-4	chr3	33799969	33800169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025978)	promoter-TSS (NM_025978)	-114.0	NM_027619	67120.0	Mm.275710	NM_025978	ENSMUSG00000027677	Ttc14	2700016E08Rik|4930434D01Rik|4931403I22Rik|4933402I15Rik|AI662468|AU014779|AW561908|cI-44|mKIAA1980	tetratricopeptide repeat domain 14	protein-coding	8.39225454547294	8.49508363410767	8.35064134612799	8.59022168834524	8.37389258208243	8.40179867984035	8.50335397211027	8.28372243511858	-0.0935121148313516	0.545333881984184	0.79585673191627
Merged-chr4-58563704-4	chr4	58563605	58563805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-10214.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	7.03693330852779	6.71953659355627	7.00250255584767	7.37377407176758	6.62705508253449	6.47257122293853	6.75839139503533	6.71480786400743	-0.58986840444357	0.00956772215947797	0.0764504822170501
Merged-chr2-148490768-4	chr2	148490672	148490872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47237.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	5.24212204742752	5.42072404783303	5.3994353700991	5.62809753788609	5.56227384668222	5.41963981743458	5.58707726793817	5.45320464285768	0.10801207770543	0.700520346596941	0.879220231175477
Merged-chr5-124532725-3	chr5	124532612	124532812	+	911.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1321.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	3.6559879248442	3.37536021960085	3.70624714791933	3.76004472081678	3.47157520935474	3.55007693951163	3.5370957294404	3.65439886179544	-0.278513997407487	0.572162195718313	0.811128321794733
Merged-chr1-161560537-4	chr1	161560441	161560641	+	993.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	65884.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	5.22334374563235	5.18233273352239	5.66228626506782	5.83677761047985	5.45621705163996	4.94291884633312	5.09739172746197	5.43099305513062	-0.464977511828232	0.167932058124603	0.459915036621355
Merged-chr17-17871139-4	chr17	17871087	17871287	+	966.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	12752.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	4.79931731590823	4.75852539840944	5.07835362218838	4.99662219102869	5.03128681645051	5.08454515970217	4.85241891740922	4.83519419950034	0.0748159687026521	0.817296544635836	0.929792874049166
Merged-chr3-31133855-4	chr3	31133757	31133957	+	951.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-16063.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	5.1024018192899	4.61361844308827	5.25111052540201	5.36144043473555	4.66857786522777	4.87961653328655	4.80083108089428	5.13070836862323	-0.48212280700976	0.181204108986137	0.477683318155781
Merged-chr6-34780677-7	chr6	34780512	34780712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001289657, exon 1 of 19)	5' UTR (NM_001289657, exon 1 of 19)	180.0	NM_001289656	76223.0	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	5.60282043285087	5.9988896639024	6.50496181005312	5.88106189563601	5.85945377362106	6.20648277439296	5.86577989229106	6.25955375925058	0.0354063879612158	0.903367530471602	0.964261253845573
Merged-chr14-55660363-4	chr14	55660264	55660464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028316, exon 1 of 5)	non-coding (NR_028316, exon 1 of 5)	144.0	NM_023397	67881.0	Mm.24601	NM_023397	ENSMUSG00000002329	Mdp1	1810034K20Rik|AI035604	magnesium-dependent phosphatase 1	protein-coding	6.7805983279595	6.8198178150582	6.6429402843658	6.39857734130533	6.35481925307045	6.34460658924844	6.23715449002115	6.07329083589808	-0.587861496972887	0.0113738815477393	0.0864752739464364
Merged-chr11-66985112-2	chr11	66985012	66985212	+	756.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27218.0	NR_130646	71576.0	Mm.340077	NR_130315	ENSMUSG00000085683	Tmem238l	9130409J20Rik	transmembrane protein 238 like	ncRNA	3.0941407648962	3.02150405527283	2.92062095712372	2.80660444897979	2.58946191929041	2.89834491261111	3.08155459244981	2.85569703350935	-0.429170417449369	0.50476315310406	0.771015182188328
Merged-chr6-83654861-3	chr6	83654806	83655006	+	922.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 2 of 6)	intron (NM_016751, intron 2 of 6)	1210.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	3.51252086217079	3.44503072977654	4.39183310292586	4.35077155839431	3.15515711703598	3.43044633994799	3.49980321988646	3.89022585747147	-1.41151401145378	0.0230412490220647	0.140523782378677
Merged-chr8-124837119-3	chr8	124837069	124837269	+	769.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25860.0	NM_025615	66523.0	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	3.51591787647933	3.36207712538878	3.37383627923266	3.61230404935535	2.6463506787941	2.76377863475735	2.80932419213228	2.96043060503071	-3.52130121845322	9.20587205888038e-06	0.000255962799718378
Merged-chr19-40708336-4	chr19	40708241	40708441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	48571.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	8.21113493523715	8.11134433428579	7.97775209669188	8.20305814092638	8.15639722469711	8.01519844139043	8.13857695490577	7.8086693398352	-0.117406954611599	0.486338348879856	0.760100660715873
Merged-chr4-133338770-1	chr4	133338670	133338870	+	746.5	f0_balb.idr	intron (NM_199306, intron 1 of 15)	intron (NM_199306, intron 1 of 15)	545.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	3.661502591287	3.42781409707184	3.51185421497971	3.40993424261501	3.32275192234312	3.39244576129467	3.49771759397214	3.4557218199164	-0.287269079226185	0.569128519678765	0.809277401806237
Merged-chr18-75019205-1	chr18	75019105	75019305	+	1000.0	f1_c57bl6.idr	intron (NM_027727, intron 1 of 16)	CpG	433.0	NM_027727	69190.0	Mm.173826	NM_027727	ENSMUSG00000035765	Dym	1810041M12Rik|4933427L07Rik|C030019K18Rik	dymeclin	protein-coding	5.17039417833551	5.53694646686413	5.171263932067	5.34142678334315	5.21473200785161	5.24399573964293	5.24200536804303	5.56619235764568	0.00200941254360909	0.994621580761518	0.998093408906001
Merged-chr6-108570539-4	chr6	108570426	108570626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52641.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	6.56623407568602	6.10116279317268	6.72338540086733	6.91169925610944	5.95354108082355	5.95550024418801	6.10797099142254	6.23689956197036	-0.829629833309978	0.00166081685084424	0.0202354129795005
Merged-chr1-16104421-2	chr1	16104318	16104518	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_011291)	promoter-TSS (NM_011291)	15.0	NM_011291	19989.0	Mm.319659	NM_011291	ENSMUSG00000043716	Rpl7	Rpl7a|Surf-3	ribosomal protein L7	protein-coding	5.6322239438737	5.81025354923502	5.39673363449014	5.24795310213308	6.18460557306739	6.19803976764669	5.7321370993838	5.75744606473501	0.76000464073438	0.00870629957884718	0.071435815299454
Merged-chr18-84851280-4	chr18	84851175	84851375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025797)	promoter-TSS (NM_025797)	-63.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	9.01143558578266	9.07236896665192	9.07832577598495	9.290905063209	9.03058815847272	9.09488000366323	9.30014729477226	8.88114914774447	-0.0455916811865061	0.775409412924062	0.912324026026444
Merged-chr15-90669677-3	chr15	90669562	90669762	+	922.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	9726.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	4.37554173937294	4.32921640633043	4.37623880006442	4.65998056900853	4.07328289950319	4.28021222174084	4.03733465418923	3.94283175023038	-0.920329065690752	0.0243529787970959	0.145812116969252
Merged-chr1-165642443-4	chr1	165642363	165642563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7922.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	6.74786784071602	6.93399873876042	7.26777698930472	6.50223994230122	6.65630857009778	6.96882135279364	6.71483720508735	6.89649126375562	-0.100521281971848	0.676782510824351	0.86728762362675
Merged-chr10-21937500-4	chr10	21937418	21937618	+	764.612488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 2 of 13)	intron (NM_001161845, intron 2 of 13)	-41154.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	3.93628220876089	3.83738775409159	3.99176939200372	3.89469476590702	4.23809846508348	4.9110884429009	4.21739815412524	4.32047592345028	1.32327046379998	0.00207810424275536	0.0240907788102742
Merged-chr13-59870321-4	chr13	59870203	59870403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-47156.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	7.63936492008645	7.21859611479254	7.49246737475714	7.0868538651964	7.41457062810556	7.65096091519661	7.56151904387821	7.65983093623872	0.275960540687574	0.171094633225452	0.464172800862232
Merged-chr7-19921095-4	chr7	19920992	19921192	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027514)	promoter-TSS (NM_027514)	51.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	4.97586767458044	5.19007560491943	4.97668882218573	5.34098124168756	5.20004682857322	4.77184395286025	5.73535378314763	5.4413362448743	0.350153113043019	0.31855808751761	0.630414216554351
Merged-chr7-38019520-4	chr7	38019418	38019618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011274)	promoter-TSS (NM_011274)	34.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	7.19558533072	7.27943649402914	7.02107514924943	7.22388895980994	6.91941807267808	6.96463054323787	7.20359570576954	7.10117969460901	-0.191372927241887	0.315336880890135	0.627105605858262
Merged-chr14-61861591-4	chr14	61861499	61861699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179226.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	7.3659986295972	7.56512701707879	7.48124040771162	7.52674681186347	6.95756586671009	7.21733342654787	7.00402538300786	7.42040505837577	-0.449911566673714	0.0204793624833246	0.130058934885846
Merged-chr11-23666371-1	chr11	23666271	23666471	+	1000.0	f0_c57.idr	promoter-TSS (NM_023651)	promoter-TSS (NM_023651)	395.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	5.09979382971782	5.19590472396823	5.37166095013867	5.12580280321697	5.0570063898747	5.13520682837048	5.20249911825541	5.13029331887808	-0.126153349713518	0.671126039882153	0.864507019889785
Merged-chr11-79660607-2	chr11	79660507	79660707	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	CpG	14479.0	NR_045898	72218.0	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	3.27220490874364	3.60280114735932	3.27260297362375	3.24391086372642	3.566307059715	3.38476906777438	3.37517649338498	3.20918699671803	0.148301582841165	0.782040950133905	0.915221466378159
Merged-chr10-4080040-4	chr10	4079930	4080130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 20 of 27)	intron (NM_001170785, intron 20 of 27)	106955.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	5.86236019663647	5.90080270076364	6.19493805426699	6.27458234682069	5.78551739060789	5.91586801718961	5.83358707341422	5.73488313473172	-0.426026812226225	0.0943841722442633	0.33612994079664
Merged-chr14-103471413-2	chr14	103471313	103471513	+	764.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41928.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	2.64899151816356	2.855801098995	2.71884997056211	2.70915075775649	2.79833700301719	2.9559180478238	3.00754381818877	2.84655178815858	0.761377556214595	0.214373216893617	0.520126876371935
Merged-chr1-152291035-3	chr1	152290942	152291142	+	877.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95640.0	NM_025677	66637.0	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	4.02897618478121	4.04365392963504	3.93908729641779	3.78211800211246	3.95910458117641	3.79839770174655	3.66623832658971	3.61961121134566	-0.484686149934696	0.294583778204262	0.606753248127819
Merged-chr7-67464799-4	chr7	67464698	67464898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91940.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	6.79334224541058	6.24593027861204	6.22313965646459	6.41121786080501	6.38099739943024	6.085243206574	6.4762983361677	6.42229905715915	-0.123016353918138	0.614962387990166	0.834205058216801
Merged-chr16-33568764-4	chr16	33568638	33568838	+	890.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 4 of 11)	intron (NM_001083902, intron 4 of 11)	50143.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	4.53535276660274	4.97812480845315	5.17486669948877	4.34820775062669	4.30996046633906	4.71324447605478	4.6775427871881	4.65779127293335	-0.423190708237302	0.299328266779927	0.611562066856898
Merged-chr8-75095017-6	chr8	75095041	75095241	+	809.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010442, intron 1 of 4)	intron (NM_010442, intron 1 of 4)	1523.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	3.28626399607915	3.23033026756035	3.51282540970773	3.08934341889086	3.63413086619781	3.73153898826018	3.21257656034991	3.40276074065957	0.807777383957632	0.136529382215359	0.411042630338623
Merged-chr2-169777416-1	chr2	169777316	169777516	+	1000.0	f0_c57.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	143770.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	3.22270066019196	2.89267724492338	2.97879024461487	2.36810466372864	4.22903995634743	3.56475824342531	4.48736387644656	4.41862592942809	5.14653490571718	0.000988837268333474	0.0133177763335304
Merged-chr7-45592002-4	chr7	45591894	45592094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-16818.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	8.12235945646122	8.08630495130631	7.30967480486148	6.71195923342992	8.02448644318965	7.84363284259942	7.7476223517946	7.47101201158104	0.130218711934669	0.76821250093459	0.909334408816333
Merged-chr11-98022719-4	chr11	98022627	98022827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031173)	promoter-TSS (NM_031173)	-100.0	NM_001282978	12295.0	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	4.69006426979178	4.84315379257392	4.83371741981067	4.47054497272018	4.58299564996543	4.57096222483707	4.59138530482221	4.68774620677179	-0.207322882793393	0.559949371811602	0.804144869989872
Merged-chr13-55212236-4	chr13	55212166	55212366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008739, intron 1 of 22)	CpG	2484.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	5.31530513490183	4.95505944746004	5.05257067657257	5.18148759564423	5.46518277526111	5.82416800116045	5.22916346024277	5.25157723709674	0.590265092224461	0.0577397384808798	0.252243130493239
Merged-chr2-90505970-3	chr2	90505933	90506133	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-26859.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.29599749596717	3.07415051709741	3.24408951462649	2.95332302339497	3.13735364996647	3.05279329908208	3.12056476787832	2.94297002479599	-0.284930332057152	0.623903561387436	0.839195335242146
Merged-chr4-9133847-4	chr4	9133747	9133947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-135446.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	5.15761532234322	5.90268578483503	5.31771987281771	4.98225842831217	5.13972201603737	5.5218981915407	5.55777713037248	4.71737908277134	-0.20284641714583	0.596126344634209	0.824433280743724
Merged-chr2-130954555-4	chr2	130954464	130954664	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009730, intron 6 of 28)	intron (NM_009730, intron 6 of 28)	48069.0	NM_009730	11990.0	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	5.73723970802632	5.30295163323406	5.76150083806266	5.88289425000255	5.43744739111797	5.59604107231172	5.16374872312193	5.73416204231143	-0.339897045289661	0.259267527837852	0.571096665653079
Merged-chr8-105393403-4	chr8	105393306	105393506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301173, intron 5 of 15)	intron (NM_001301173, intron 5 of 15)	18025.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	6.77885875327921	6.57058039629779	6.33385103809704	6.32154823318221	6.7175071334759	6.75254298002423	6.66273211703525	6.12227389008375	0.121715454328799	0.623012444915978	0.838874123993614
Merged-chr10-117836562-4	chr10	117836454	117836654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	B3A|SINE|B2	9420.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	6.05793484223194	6.08603083031418	5.76903776803972	5.80277213629788	5.69550426941676	5.78623261396265	5.96735891080453	5.90709957361381	-0.149016338227474	0.558173645683501	0.803013031815704
Merged-chr10-82899116-3	chr10	82899022	82899222	+	980.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	32496.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	3.62661230675728	3.50661666398686	3.83912268381922	4.10279729984249	4.9725774844261	4.5637657669893	5.52754002061338	4.50724487390327	2.81846232464928	0.000823315747535856	0.0115065367354908
Merged-chr5-64959232-4	chr5	64959093	64959293	+	956.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359180, intron 1 of 1)	intron (NM_001359180, intron 1 of 1)	903.0	NM_001359180	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	4.26016131356549	4.28283561749231	4.0598388380298	4.50636925842004	4.57414043820103	4.56439898396968	4.0436772773908	4.54821365912549	0.353260756827258	0.392738066385698	0.692117979418531
Merged-chr7-122289061-4	chr7	122288950	122289150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008855)	promoter-TSS (NM_008855)	-75.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	6.25095917982549	5.92087744652225	5.77925368719155	6.0757192078857	6.05306911343133	5.98226512667966	6.18385917209188	6.07512158983641	0.0839518730684495	0.730619289265083	0.893184088873993
Merged-chr11-58867260-4	chr11	58867155	58867355	+	871.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172403)	promoter-TSS (NM_172403)	15.0	NM_172403	69944.0	Mm.32118	NM_172403	ENSMUSG00000020491	2810021J22Rik	AI449137	RIKEN cDNA 2810021J22 gene	protein-coding	4.26747030630401	4.18665187013662	3.73559500720255	4.26940533902168	3.83003502680497	3.9147630628452	4.20840264989365	3.79204061019017	-0.521249072900375	0.254224850097739	0.565571827007563
Merged-chr11-75455472-3	chr11	75455347	75455547	+	870.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138950)	promoter-TSS (NM_138950)	-730.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	3.51688607474963	3.55047108853835	3.78712099008209	4.02845168257776	3.83971716344354	3.69224743931562	3.38102060361621	3.8325502802618	-0.143312061454254	0.781942791293983	0.915185669649708
Merged-chr6-116074065-3	chr6	116073975	116074175	+	817.349976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-79070.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	3.42649854494147	3.38983422340242	3.57691586497322	3.31499079513595	3.36725916620353	3.30616348373697	3.18438841063299	3.19348703794828	-0.55859324647168	0.294601205176753	0.60675402729387
Merged-chr13-4618401-4	chr13	4618290	4618490	+	893.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9226.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	4.19968207625747	4.10811011492563	3.77893333839709	4.24065973188161	4.34721874930433	4.32618594043213	4.22556684092099	4.24190668364391	0.451690125351539	0.273495097837296	0.585133459876006
Merged-chr13-47242609-4	chr13	47242521	47242721	+	939.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 6 of 7)	intron (NM_146042, intron 6 of 7)	48618.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	4.85123030546937	4.57032423899801	5.18667310924435	5.00465493503505	4.83330045862522	4.47631743347515	4.51663654088321	4.57789274300834	-0.633890916267821	0.0856763677566709	0.318801724112713
Merged-chr8-33722280-3	chr8	33722197	33722397	+	702.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9617.0	NM_001167921	68153.0	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	3.44212869118084	3.52738114845929	3.07908726864349	3.58676672678767	3.26050232754462	3.38513693937451	3.32001354023829	3.33058983505168	-0.3901174728195	0.474734642381083	0.751855589262771
Merged-chr1-37427411-4	chr1	37427306	37427506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198006, intron 2 of 2)	GA-rich|Low_complexity|Low_complexity	2697.0	NM_198006	76178.0	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	5.18159306127712	5.00646354112868	5.39359542722402	4.99403373850449	5.31301356638563	5.50997700765164	5.15703754247807	5.57033322654554	0.463392951131957	0.127552716147154	0.397369460390093
Merged-chr5-96921723-4	chr5	96921627	96921827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131152, intron 1 of 2)	intron (NR_131152, intron 1 of 2)	455.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	5.21391056709412	5.20467299417637	5.51147201795011	5.32877325359145	5.46342479613573	5.54594987630785	5.5351551091818	5.42572008624395	0.303965879669033	0.272734039647425	0.584146366806008
Merged-chr15-75600353-3	chr15	75600246	75600446	+	938.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3716.0	NM_026730	68453.0	Mm.46367	NM_026730	ENSMUSG00000022579	Gpihbp1	1110002J19Rik|GPI-HBP1	GPI-anchored HDL-binding protein 1	protein-coding	4.45460462660904	4.15210802020102	4.56022825443344	4.35703082753958	3.66184665718077	3.86391585774444	3.95651086107242	4.07262741417476	-1.32157853772	0.00266307294452515	0.02911749141603
Merged-chr2-118541053-4	chr2	118540953	118541153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	3534.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	5.37316529467503	5.54775078916928	5.30907947763633	5.27523921758468	5.81184911510557	5.92862516414553	5.83734463701354	5.84159576164819	0.807712503448098	0.00185777879308383	0.0221054558196112
Merged-chr15-78330171-3	chr15	78330075	78330275	+	774.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	4185.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	3.26505573730322	3.14892828719439	3.31970302944125	3.1700713021909	3.29569960120764	3.26007895722535	3.01346193195012	3.1481434849124	-0.134524952427837	0.806836962404557	0.92554367415935
Merged-chr17-56264224-4	chr17	56264137	56264337	+	929.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010192)	TTS (NM_010192)	7444.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	4.67160421025198	4.95101623575087	4.16226224496686	4.32879936169393	5.05606589318569	4.88243949536488	4.48825834935155	4.46165024644618	0.409873340660569	0.32692710180415	0.638540849527142
Merged-chr4-154140810-2	chr4	154140710	154140910	+	991.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011642)	promoter-TSS (NM_011642)	-602.0	NM_011642	22062.0	Mm.78015	NM_011642	ENSMUSG00000029026	Trp73	TAp73|Tp73|deltaNp73|p73	transformation related protein 73	protein-coding	2.82428134831848	2.76588118859828	2.76702202906663	2.54726828601265	2.51852246309974	2.45694743298242	2.49975945651453	2.76550931331931	-0.827511419395174	0.234014783447374	0.543722483140221
Merged-chr9-116098740-2	chr9	116098660	116098860	+	765.25	f0_balb.idr|f0_c57.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	76603.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	4.36615210666579	4.27586938120508	4.36687180672581	3.9543523420165	3.8185722157456	3.71831238189659	4.0925479494444	4.32474809961975	-0.608834596268419	0.183839008031339	0.481012966940989
Merged-chr17-57098486-4	chr17	57098391	57098591	+	805.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033508, intron 3 of 3)	intron (NR_033508, intron 3 of 3)	-6894.0	NM_009404	21950.0	Mm.41171	NM_009404	ENSMUSG00000035678	Tnfsf9	4-1BB-L|4-1BBL|AI848817|Cd137l|Ly63l	tumor necrosis factor (ligand) superfamily, member 9	protein-coding	4.35437478270527	5.20935906547767	4.44690455394281	4.14099258886344	4.61090615990726	5.06227007039019	4.23793179642562	4.09126558002245	-0.114807393785737	0.815405136769252	0.928768919159139
Merged-chr4-136898027-5	chr4	136898023	136898223	+	970.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007572, intron 1 of 2)	(CCCTAA)n|Simple_repeat|Simple_repeat	721.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	4.89745443078637	5.15205074409877	5.07043693904628	4.60820575498839	5.03684693699272	5.33451389310795	4.76032250501443	4.93128482927804	0.187919207419253	0.591222359876356	0.821525680896513
Merged-chr5-143820892-3	chr5	143820793	143820993	+	591.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50969.0	NM_013557	15467.0	Mm.389709	NM_013557	ENSMUSG00000029613	Eif2ak1	HCR|Hri	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding	3.58168251269478	3.16583435714944	3.33921740933196	3.19119775333822	3.16227628075174	3.07897515456414	3.32556370792315	2.9683357518199	-0.690909015983131	0.23294929410192	0.542529132777439
Merged-chr14-61678300-4	chr14	61678196	61678396	+	852.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	4077.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	4.20099234463635	4.58189736149712	4.20160872790464	4.34916148191982	4.48970563084782	4.11725619797346	4.40190213840221	4.33576067775904	0.0096034409710996	0.980607849437642	0.99281244474172
Merged-chr4-132946153-2	chr4	132946049	132946249	+	915.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-23598.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	4.2426749122851	4.44019171301457	4.5626700185042	4.68381717628703	4.65379932007889	4.73467847305414	4.54167237848284	4.71174453096683	0.333193551311295	0.362324877032015	0.667521051512637
Merged-chr2-31084642-4	chr2	31084542	31084742	+	989.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 4 of 15)	intron (NM_001355105, intron 4 of 15)	11858.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	5.11651322451474	5.27100708311427	5.18107379156591	5.38150811902204	4.95713370040648	4.92109012387483	4.95635730315742	5.26713555182375	-0.423929395712616	0.170199348319103	0.463203311692493
Merged-chr11-118312477-4	chr11	118312400	118312600	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011594, intron 3 of 4)	intron (NM_011594, intron 3 of 4)	-22256.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	5.32265408208071	5.7252488547445	5.4641099006398	5.26250289307177	5.47151343274968	5.37444543446257	4.96164135624751	4.81791890811888	-0.462108687766754	0.166340313144506	0.457529065202596
Merged-chr1-138130347-2	chr1	138130247	138130447	+	994.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	44779.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	3.37597197986006	3.43650510653945	3.31921818471231	3.1511964544893	3.3994745028811	3.43325853870219	3.05320705453661	3.62708447669846	0.267000645884953	0.626441965142342	0.840550306078773
Merged-chr9-21526166-4	chr9	21526083	21526283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_206536)	promoter-TSS (NM_206536)	6.0	NM_206536	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	6.89570570174033	6.53459503799653	7.21723328558287	7.07561707117223	6.34187078810297	6.4321893360334	6.39591351504007	6.32949911501548	-0.839903273978634	0.000292162980416944	0.00496498417800013
Merged-chr16-94517841-4	chr16	94517705	94517905	+	944.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 1 of 7)	Lx5c|LINE|L1	8824.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	4.12542767202774	4.8379925666558	4.46008240955806	4.40896146966897	4.63543803571392	4.67344928959699	4.52039527797835	4.06841471837383	0.031764070059378	0.939648107647922	0.978240735005876
Merged-chr13-107118339-4	chr13	107118248	107118448	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95778.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	5.05658771186092	4.94490379703632	4.95472110707908	5.31064055548797	5.11544550944699	4.56993509417005	5.34799715391255	4.80042156735892	-0.16887920012626	0.635908664256074	0.845980540017253
Merged-chr2-52999650-4	chr2	52999528	52999728	+	977.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	141760.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	5.46512920553999	5.45167065681702	5.10734784988961	4.92092185244529	5.41218105985613	5.38144858523131	5.11635861070409	5.13792384521673	0.0571932850028539	0.858755372187699	0.946576014812915
Merged-chr11-34063848-4	chr11	34063761	34063961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 3 of 20)	intron (NM_010696, intron 3 of 20)	16933.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	6.97809653443348	7.17029794615941	7.20253692646749	6.78445370010868	7.19065141336713	7.30133658077433	6.93117373730052	6.89480581013754	0.0802931287521357	0.705863458378845	0.881859110549825
Merged-chr15-37972845-4	chr15	37972746	37972946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001112721, intron 56 of 58)	intron (NM_001112721, intron 56 of 58)	-11791.0	NM_199476	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	5.74293510331285	5.81665002744559	5.30447580825704	6.14245864746154	5.62576741780259	5.45105661055028	5.85451711989015	6.15750429886692	-0.0077495412080952	0.980534392358248	0.99281244474172
Merged-chr5-33782351-1	chr5	33782251	33782451	+	1000.0	f0_balb.idr	intron (NM_019694, intron 1 of 13)	CpG	353.0	NM_019694	56384.0	Mm.260538	NM_019694	ENSMUSG00000005299	Letm1	-	leucine zipper-EF-hand containing transmembrane protein 1	protein-coding	4.72748217847826	4.73648577826524	4.29305291455956	4.60300231062971	4.6225504477316	4.82465849305388	4.63045829186455	4.83116854045061	0.261403955476703	0.461482503317887	0.743289746901092
Merged-chr5-110107750-4	chr5	110107637	110107837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145147, intron 1 of 9)	CpG-11316	460.0	NM_145147	107999.0	Mm.86267	NM_145147	ENSMUSG00000033434	Gtpbp6	AV119224|Pgbpll|pgpl	GTP binding protein 6 (putative)	protein-coding	7.41331476739537	7.37477078528018	7.50442392738482	7.79949033805544	7.83515800471413	7.83594489630617	8.29363578191194	7.84240751817111	0.550177000472597	0.00658244499272447	0.0581004270746929
Merged-chr14-73145120-2	chr14	73145020	73145220	+	849.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_033185, intron 1 of 15)	intron (NR_033185, intron 1 of 15)	2335.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	3.08884389194691	3.00088090147261	2.80346864606319	2.48231183241415	2.42125326791439	2.84850000513281	2.51403941300143	2.92377149389268	-0.795226066764648	0.28547012109886	0.597175035258208
Merged-chr18-37765888-2	chr18	37765788	37765988	+	639.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_033595, exon 1 of 4)	5' UTR (NM_033595, exon 1 of 4)	308.0	NM_033595	93724.0	Mm.247203	NM_033595	ENSMUSG00000102428	Pcdhga12	Pcdh13|pc2c	protocadherin gamma subfamily A, 12	protein-coding	2.7920466989424	2.82532214585636	2.64938870232452	2.95920455740472	2.7960536184724	3.03040869168012	3.08101809293429	3.14467245046619	0.836332613354641	0.186202440083083	0.484113766444254
Merged-chr1-91041795-4	chr1	91041696	91041896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-11648.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	8.12550103774672	8.11193726703562	8.33063828879834	8.35767653040048	7.9716645945707	8.2126253824182	8.39446289833567	8.15882252912747	-0.0651868733932364	0.705899515169702	0.881859110549825
Merged-chr5-137095375-4	chr5	137095280	137095480	+	796.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	20827.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	3.68748084112266	3.90776004174146	4.21020500503103	3.55576676836001	4.27907477067448	4.33852395536008	4.45817193496459	4.02281070432767	1.13677582569591	0.0122971769102467	0.0914629838343208
Merged-chr1-161076447-4	chr1	161076293	161076493	+	971.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131030, intron 2 of 4)	B1F2|SINE|Alu	5626.0	NR_131029	70454.0	Mm.248212	NM_027429	ENSMUSG00000026708	Cenpl	2610300B10Rik|AW121806|AW550697|CENP-L	centromere protein L	protein-coding	4.77079594212427	5.22173557959406	5.50455060318283	5.23212940929658	5.45710907920052	5.56802295447043	5.57812180684668	5.76343824935362	0.672522900127141	0.027631582409095	0.158586389638524
Merged-chr4-53180693-4	chr4	53180584	53180784	+	866.520874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20789.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	4.54919433421179	4.3148070867757	4.43252958580174	3.92213800253085	4.35920852004906	4.60395685100101	4.41194793991658	4.20662198101634	0.219886718489534	0.596879837358645	0.824985875654518
Merged-chr13-37890350-4	chr13	37890248	37890448	+	962.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 2 of 9)	intron (NM_001039188, intron 2 of 9)	1477.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.30355353596966	5.53499883634752	5.85340239672288	5.96542438445443	4.8617892863633	5.08889573580746	5.24667060185745	5.26916822158471	-1.04428408755008	0.00105751527681218	0.0140775911517139
Merged-chr11-120634021-3	chr11	120633892	120634092	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010756)	promoter-TSS (NM_010756)	-445.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	5.59924624421778	5.93686596289265	5.42384988442906	5.72922663145299	5.79059371318322	5.57106790915041	5.62544328642317	6.16135010321045	0.19247256442902	0.501514790807665	0.7692646023024
Merged-chr2-116942545-4	chr2	116942431	116942631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42379.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	6.06075300194893	5.73336356060761	6.52031911061457	5.86428324787058	6.19352700266432	6.0321333724344	6.39548068312318	6.03603184884228	0.165060323130254	0.550650296568346	0.798673593705145
Merged-chr1-149957689-4	chr1	149957599	149957799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	3591.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	7.12958285285072	7.04812704657614	7.32913169141921	7.32916294928114	7.65320505550565	7.34333925447795	7.24079110568071	7.22884165606646	0.226578666794401	0.257599841536861	0.569440392056059
Merged-chr8-103941096-4	chr8	103941002	103941202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160523.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	5.8435647624696	6.35028150254662	6.12558337275029	6.31582930560852	5.76611614715116	5.59998038419318	5.95149255484364	5.65881174560954	-0.686020800159915	0.00870804230692858	0.071438619785843
Merged-chr12-40557899-4	chr12	40557795	40557995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	111842.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	5.84724161444675	6.12728265223108	5.45149949839201	4.93640179598601	5.82234391545241	6.0672557423892	5.88419128377663	5.67424752935042	0.341624790777975	0.320902376536091	0.632676239078814
Merged-chr11-5503552-2	chr11	5503473	5503673	+	878.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-17068.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	2.5531165175125	2.42487034067632	2.55335956058164	2.57233959038243	2.92702372788479	2.79777555303111	2.96826117313781	2.81359590841651	1.69742460862414	0.00988097202119657	0.0782249504150729
Merged-chr19-8735832-4	chr19	8735701	8735901	+	995.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134139)	promoter-TSS (NM_134139)	-38.0	NM_134139	107071.0	Mm.29627	NM_134139	ENSMUSG00000042729	Wdr74	5730436H21Rik|AA407588	WD repeat domain 74	protein-coding	5.71723634829591	5.59330694544111	4.96949762778481	5.33446603397673	5.56388078654822	5.86798173902356	5.17534965266667	6.00712684000125	0.436695253745573	0.192338427443448	0.491913942258532
Merged-chr3-79145815-4	chr3	79145722	79145922	+	891.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310536)	promoter-TSS (NM_001310536)	53.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	4.33282810694259	4.10884867560668	3.98056994793164	3.74663125356064	4.21868653523891	3.81918594522223	4.23436160598521	4.0759030881073	0.146110824763772	0.745445064200767	0.899520813480027
Merged-chr9-23570370-4	chr9	23570260	23570460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	347284.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	5.92498832660166	5.70451872351935	5.63885825554287	6.23555515952454	5.43152161612936	5.55083092556373	5.76114262087166	5.81007741570522	-0.45259664080819	0.116712711759256	0.378049286226687
Merged-chr12-98280724-4	chr12	98280594	98280794	+	901.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12059.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	4.04494590575784	3.98331076471584	3.87831357241374	4.34244636557138	4.56529362910825	4.36700653127231	4.42674528925973	4.36586622611441	0.822712963177411	0.0496769015755479	0.23077615045333
Merged-chr3-89233624-4	chr3	89233515	89233715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_183037)	TTS (NM_183037)	4559.0	NM_013605	17829.0	Mm.16193	NM_013605	ENSMUSG00000042784	Muc1	CD227|EMA|Muc-1	mucin 1, transmembrane	protein-coding	5.85431043388333	5.92166072940869	5.31035292309016	5.84691981520353	5.69785413183926	5.58638342697065	5.60996620090981	5.71089033687062	-0.181872497030651	0.510672573461247	0.77490328102665
Merged-chr11-58008746-4	chr11	58008638	58008838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028451)	promoter-TSS (NM_028451)	-326.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	6.91324408044934	6.94400990468298	6.05148261603718	6.02320584411619	6.74095219592063	6.80304652710131	6.65256931754721	6.59067853187335	0.210575525653905	0.467261957398679	0.746945423353932
Merged-chr15-59501672-4	chr15	59501557	59501757	+	980.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	127459.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	4.41054650418773	4.7591265422459	4.91605800612548	4.77153945554277	4.98863118152038	5.05370461680816	5.02332690549251	5.04476083629758	0.589699993728254	0.0737516359877998	0.292487614106062
Merged-chr2-37426199-4	chr2	37426098	37426298	+	949.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_146253, exon 2 of 2)	3' UTR (NM_146253, exon 2 of 2)	-3295.0	NM_001290642	319817.0	Mm.288785	NM_001100591	ENSMUSG00000075376	Rc3h2	2900024N03Rik|9430019J22Rik|D930043C02Rik|Mnab|Rnf164	ring finger and CCCH-type zinc finger domains 2	protein-coding	4.78389099682176	5.19086747829719	5.11156910158867	5.22365086325835	5.23469764015544	4.92177982704793	5.3695743922131	4.60532902073832	-0.0451763804340288	0.898101276950385	0.962001336203389
Merged-chr10-118096347-4	chr10	118096284	118096484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45403.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	7.29777137101757	6.93995726720544	7.85187995866149	7.72262308794772	7.44234935746253	7.3395491659079	7.77850776284273	7.56611012446758	0.0473656992674497	0.844164198985247	0.94088019607581
Merged-chr6-54039925-4	chr6	54039831	54040031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163640)	promoter-TSS (NM_001163640)	-1.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	5.50447908443815	5.49916212957253	5.33256107383694	5.32508042134927	5.61464553060509	5.56694705323716	5.42315143377686	5.32890096659476	0.145275656952417	0.599342607212357	0.826316125212269
Merged-chr16-52093096-4	chr16	52093011	52093211	+	724.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	61562.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	3.66340102253576	3.3799654216153	3.66390898981286	3.64138290941091	3.84334561452849	3.78177886125233	3.79696534037689	3.60792131534259	0.51718835335687	0.2719373682962	0.583524814229316
Merged-chr1-193173552-4	chr1	193173451	193173651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181048)	promoter-TSS (NM_181048)	-26.0	NM_001160359	319266.0	Mm.482460	NM_181048	ENSMUSG00000079144	A130010J15Rik	-	RIKEN cDNA A130010J15 gene	protein-coding	9.03147411888039	9.12566535408199	8.92398079262398	9.09975221629232	9.10089739782896	9.13186012815665	9.09280988862422	9.07163279815207	0.0607375024157826	0.658713750048568	0.857995155933081
Merged-chr1-151625915-4	chr1	151625801	151626001	+	796.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	L1MD|LINE|L1	54528.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	4.11509058511586	4.35503044343338	4.16310679153306	4.31569193425566	4.06515859345271	4.13869152235044	4.04965793816006	4.37405440600573	-0.223571287813185	0.580305989993452	0.815718435955212
Merged-chr2-3660138-3	chr2	3660034	3660234	+	801.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53324.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	3.6169179478994	3.4325350453602	3.40600350180542	3.42550639131478	3.42079287486597	3.26437541437401	3.50219072643744	3.66258023671568	0.00306814159247292	0.995182301179005	0.998253678348653
Merged-chr9-121675133-3	chr9	121675035	121675235	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	29894.0	NM_178677	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	3.85253967988726	3.70335054687387	3.85308550154077	3.60325559112063	5.64663756454391	5.652548146	5.76188637256156	6.05895903285334	4.43089987127005	4.30136303712101e-22	1.90165664359774e-19
Merged-chr8-83748063-4	chr8	83747973	83748173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6762.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	7.74801516336167	7.6720172231898	7.49376527522265	7.73102536995464	8.39384140067005	8.23978387885696	8.64258172906856	7.89913563009845	0.844230883070703	2.26361590848796e-05	0.000568531816338265
Merged-chr2-148073940-3	chr2	148073844	148074044	+	967.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26975.0	NM_010446	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	4.01208610780153	3.6745256808563	3.88520985840246	3.50576424248427	4.80407300270993	4.57313549282012	5.33621893804673	5.56361361073181	3.15789116738276	9.5232486909949e-13	1.01627484044427e-10
Merged-chr15-55112344-4	chr15	55112232	55112432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145470)	promoter-TSS (NM_145470)	15.0	NM_145470	97998.0	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	7.88671245981251	8.09577218976418	7.59686941161833	8.06146884472988	7.76858939154897	7.80149235409186	7.89934607134998	7.653802867894	-0.193929197618273	0.29229504267658	0.60464613451935
Merged-chr7-36717807-2	chr7	36717707	36717907	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172298, intron 1 of 1)	intron (NM_172298, intron 1 of 1)	19689.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	3.36186683173909	3.36296801557983	3.29554528938666	3.31590307782195	3.90336801597138	4.18162278742151	3.63857041754863	3.59857402402636	1.621328013174	0.00121588718186713	0.015721277696298
Merged-chr11-62076913-4	chr11	62076812	62077012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029936)	promoter-TSS (NM_001029936)	-112.0	NM_001029936	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	6.62549941271723	7.04883868399214	6.80226225496326	6.77936450081098	6.5637250744305	6.48523533353288	6.65388965519233	6.54090618635975	-0.37370302781921	0.0754997737284009	0.29675842919067
Merged-chr9-66158204-4	chr9	66158085	66158285	+	965.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010019)	promoter-TSS (NM_010019)	-41.0	NM_010019	13143.0	Mm.304472	NM_010019	ENSMUSG00000032380	Dapk2	-	death-associated protein kinase 2	protein-coding	4.62471100819291	4.88243102983424	4.71392240180885	5.06001978672057	5.06452716551094	5.28743643299365	5.29083307404171	5.08043343083876	0.630269581763033	0.0569778078921149	0.25014638795737
Merged-chr13-37679010-4	chr13	37678905	37679105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147033.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	8.0364652570243	8.38829842680325	8.15088981849687	7.91667136915604	7.74644143753123	8.16821308183273	7.8239434227959	7.88616537736992	-0.285023111182852	0.131950671784019	0.404379439719051
Merged-chr3-69667552-4	chr3	69667469	69667669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-54486.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	5.88369795478563	5.83806125919486	5.32913675699267	6.051632415076	5.77793937060987	5.70060833997357	6.0793173789134	5.88053926402768	0.0760577907182047	0.789198071813318	0.91835324030065
Merged-chr15-59807951-4	chr15	59807853	59808053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12994.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	7.98570274402864	8.14679037911632	8.35547648570133	8.10389690079925	8.12081417338409	8.27843597017389	8.35247230524679	8.07615838828277	0.0726807073411113	0.666054158103446	0.861861238586864
Merged-chr1-46854129-1	chr1	46854029	46854229	+	1000.0	f0_c57.idr	promoter-TSS (NM_172653)	promoter-TSS (NM_172653)	-511.0	NM_172653	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	6.61734435774137	6.45035320443688	6.95531014105633	6.53294275912757	6.69136238781644	6.93204621456302	7.03696115382947	6.88733748563441	0.34534797064325	0.11580519829052	0.376560001979254
Merged-chr8-60969272-2	chr8	60969172	60969372	+	718.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007711, intron 1 of 11)	intron (NM_007711, intron 1 of 11)	14039.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	2.91525326714884	2.86326046739176	2.91563856791629	2.79322362900063	2.73497160283654	2.9635532778122	2.57780616033549	2.85421848192994	-0.377378441909333	0.552273641655581	0.799525810795912
Merged-chr8-40511317-4	chr8	40511228	40511428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033560)	promoter-TSS (NM_033560)	426.0	NM_001271543	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	6.30890437801127	6.02693430729677	6.27472121467212	5.97860149392667	6.28390393677893	6.00582394002577	5.8481952407552	6.07717293849771	-0.106249063036303	0.671103750083259	0.864507019889785
Merged-chr3-27237415-4	chr3	27237292	27237492	+	983.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	54388.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	4.69442518770918	4.99823189815215	4.47569296132072	4.55607723232971	5.10544944986755	4.94730850426468	4.71278138127023	4.97997795964235	0.525432255539705	0.13274514023914	0.405738749474138
Merged-chr10-40139843-4	chr10	40139766	40139966	+	892.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	2388.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	3.80919661192536	4.18973616484536	4.07853564695545	4.47516742378875	4.03150221553703	4.04662091996358	3.96132080321394	4.52173567228315	-0.0427298489009393	0.92655965739471	0.973020473242623
Merged-chr14-47354291-4	chr14	47354185	47354385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19575.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	5.92607211441481	5.82169376384759	5.71114689921573	6.04628805973335	6.10292114523897	5.77946554108107	5.87480092239878	5.68072367347755	-0.0211533761544186	0.935376348172897	0.976553886506881
Merged-chr13-23450645-4	chr13	23450531	23450731	+	879.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Thr-ACY_|tRNA|tRNA	15270.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	4.39123413202263	4.75704641894398	4.84189126906867	4.49639009898612	4.32499909559105	4.27277368971957	4.23154873368542	4.67034595275776	-0.552794704289365	0.156789678280664	0.442893690014765
Merged-chr6-134535005-4	chr6	134534846	134535046	+	918.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	31967.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	4.53254184062292	4.29912780879319	3.91347988453838	4.38292840735171	4.28054867612777	3.85245257366348	4.19785472275958	4.21384132440737	-0.37706156837132	0.384414924287164	0.685951673034199
Merged-chr5-67827132-4	chr5	67827043	67827243	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	L3|LINE|CR1	20288.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	4.73762201205633	4.80666184103665	4.60752033502231	4.95751767600192	5.35946593216878	5.23865731934845	4.87134515122595	5.1560475170475	0.726826647229826	0.0291519405800086	0.164135894521787
Merged-chr15-81534139-4	chr15	81534042	81534242	+	939.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-52072.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	4.89808755569826	5.37613878757744	5.08737851814274	4.30286396545679	5.54419380505218	5.74929153079783	5.37031271559379	5.36618448167331	1.00949685385579	0.00628887540207514	0.0561564663744157
Merged-chr2-14187100-4	chr2	14186996	14187196	+	850.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081310, intron 1 of 3)	MLT1C-int|LTR|ERVL-MaLR	12572.0	NM_001081310	625286.0	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	4.43050824762469	3.98179001492324	4.1040339370232	4.23669409161513	4.13241682306922	3.90901742139199	3.93974744602727	4.10155451224911	-0.439308834815471	0.301161273112272	0.613133066153493
Merged-chr15-62057634-4	chr15	62057525	62057725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	L1MB4|LINE|L1	18368.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	7.53907743888742	7.45404165252927	7.8905409121017	7.74593405343143	7.18053656852279	7.30760818455306	7.2673233717703	7.69509049545289	-0.392524550844195	0.0552922912505714	0.245885917713634
Merged-chr4-120885400-4	chr4	120885301	120885501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 4 of 7)	B4A|SINE|B4	30602.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	5.96860498713956	5.33868274913815	5.51608224021945	5.81583454752134	5.60258544791381	5.7203257831609	5.59770738483382	5.74728967895568	-0.0387574575894737	0.890847607179382	0.959197087016825
Merged-chr17-36252602-4	chr17	36252448	36252648	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5298.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	4.75911160854746	5.00856890955906	5.04599472995873	5.07690137601037	4.84682256303396	5.08379039209493	4.88746289957577	4.71616668686353	-0.200902526391085	0.537756920941918	0.791223080787503
Merged-chr2-51148560-4	chr2	51148424	51148624	+	808.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028810, intron 1 of 4)	intron (NM_028810, intron 1 of 4)	587.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	3.21598616612977	3.67105443570142	3.40207335358704	3.46059638094801	3.41720608557475	3.57336106660908	3.54984462476248	3.40031025510027	0.11192935074009	0.827615915996003	0.933903677361406
Merged-chr3-37759068-3	chr3	37758949	37759149	+	841.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34689.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	4.01957173611344	4.06908737524763	3.40542370863332	3.67558452212272	3.68300344655129	4.35369360092946	3.81184956471708	3.66071651898786	0.248351900985974	0.63735919869256	0.846739154200188
Merged-chr5-43869390-4	chr5	43869251	43869451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	542.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	7.03183151952797	7.53126723610769	7.71124243451192	7.01858068614685	7.63480352356297	7.82431799647224	7.90730694305879	7.26013986548828	0.431791168289157	0.0721659767238814	0.288659851488011
Merged-chr1-66700837-4	chr1	66700765	66700965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025683)	promoter-TSS (NM_025683)	34.0	NM_001310644	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	7.84768014258283	7.79160150942466	8.15694493941498	7.91686183933579	8.0273579543062	8.04910110589633	8.15899636832369	7.74914125322033	0.0923663631593539	0.605440460802982	0.828854779672177
Merged-chr7-74909314-2	chr7	74909214	74909414	+	751.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-120897.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	2.59963902040512	2.7808900565438	2.81371793870545	2.68337616219629	2.71395295736267	3.11039641628564	2.92808669194178	3.20683247322862	1.23328235986741	0.0523521545912402	0.238335402088256
Merged-chr11-20470440-6	chr11	20470134	20470334	+	897.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-73019.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	2.80246353940223	2.83567843593677	3.0525490438313	2.65780874413291	2.91188694130231	3.16455323501073	2.92292888451651	3.05082324900135	0.781059442981561	0.199709288841959	0.501609353558057
Merged-chr17-5804530-4	chr17	5804439	5804639	+	923.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5049.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	4.58055864307881	5.38070732057267	4.49135555974913	4.99018229672084	4.72750527114731	4.99197321963435	4.21885699226244	4.66239830089066	-0.488322905393397	0.24825061340825	0.559336071774142
Merged-chr16-30969482-4	chr16	30969411	30969611	+	757.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	111921.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	3.87554696153289	3.63594306913608	3.87611309037157	4.04465001561343	3.87361999584005	3.94648355451585	3.53350539957575	3.87382347970719	-0.167145635569712	0.72203010185883	0.889095345567057
Merged-chr13-12542271-4	chr13	12542188	12542388	+	980.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21838.0	NM_133643	171211.0	Mm.159671	NM_133643	ENSMUSG00000095105	Edaradd	1810032E07Rik|5830469M23Rik|A630043P06|cr	EDAR (ectodysplasin-A receptor)-associated death domain	protein-coding	4.43257222931403	4.79081855395646	4.98680138033125	5.11887118548653	4.81213750263322	4.7504774791424	4.79242031319899	4.84824199837504	-0.149203381529537	0.676554177335745	0.867199398328519
Merged-chr5-33005589-3	chr5	33005491	33005691	+	905.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13225.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	4.23591395796043	3.80805182361269	4.23661483973895	3.63803344070565	3.76084809165677	3.74981358477672	3.79283763653419	4.52122297621739	0.000796778066842697	0.998768815983957	0.999456847362886
Merged-chr19-36348305-4	chr19	36348190	36348390	+	945.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30777.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	4.74528764441648	4.93370011039297	5.33088579117725	4.93121406134381	4.81817275718639	4.61990001821738	4.72380800873245	4.53101242467096	-0.642107575412462	0.0688577064319316	0.280422398793824
Merged-chr15-51729077-4	chr15	51728962	51729162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136399.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	7.64640936513016	7.96977109595742	7.64770086324174	7.64659592518941	8.18379159331723	7.99728714411219	7.95949966085531	7.91727814202182	0.374063021017261	0.0333253588831471	0.179443658366255
Merged-chr3-137293319-3	chr3	137293206	137293406	+	928.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47772.0	NM_001163522	59308.0	Mm.27343	NM_016885	ENSMUSG00000054690	Emcn	0610012K22Rik|AI315669|Muc14	endomucin	protein-coding	3.69827207487479	3.69477247445407	3.98211895484592	3.81090792210446	3.55646017138674	3.817235781412	3.5750439761526	3.64279930597486	-0.472262997335178	0.315088904476685	0.62702878136683
Merged-chr11-77467282-4	chr11	77467185	77467385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_139128, exon 5 of 10)	exon (NM_139128, exon 5 of 10)	3372.0	NM_139130	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	5.80859588919641	6.11812957542519	5.66105010471416	5.88966584617568	5.70602929186003	5.60984669204052	5.65833147349136	5.51855742183097	-0.421726513927259	0.109087750813121	0.364679551715532
Merged-chr9-25485702-4	chr9	25485597	25485797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	4100.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	7.32502730200448	7.36947916457442	7.36757784523291	7.60090642806638	7.37602972552601	7.41677467009753	7.55292405718479	7.4506300909354	0.022318573554441	0.90127108747462	0.963342914941175
Merged-chr2-116894786-4	chr2	116894684	116894884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5368.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	5.95210119564272	5.76668800437978	5.99447409539536	6.077986260509	5.69158797450866	5.49093371002953	5.61677473357516	5.58647735177511	-0.583558854818303	0.0232254260671688	0.141223456380651
Merged-chr7-3290418-4	chr7	3290329	3290529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016969)	promoter-TSS (NM_016969)	-126.0	NM_016969	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	6.83477597005887	7.06320951539869	6.04090734979959	6.35926238491698	7.6110559780385	7.73121246131694	7.55679500403722	7.09130714020904	1.21328530818904	8.45998533628245e-06	0.000237067784181812
Merged-chr12-111458780-4	chr12	111458679	111458879	+	885.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16118.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	4.00100873754778	3.71169181673802	3.63822818867143	3.92864805438317	3.92698525192215	3.75613589166705	3.9839607700329	4.08631129438004	0.307195558014921	0.495209874345908	0.765570679090165
Merged-chr9-45396092-3	chr9	45395988	45396188	+	895.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_022004)	TTS (NM_022004)	-3621.0	NR_028499	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	4.14631666315222	4.27764203380478	4.5475418011692	4.72151950307165	3.99637957349684	3.82516511538643	3.81452456549586	4.04677496418905	-1.36042206585935	0.00218517931729471	0.0250303956591117
Merged-chr14-54554431-4	chr14	54554328	54554528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145462)	promoter-TSS (NM_145462)	-67.0	NM_145462	219072.0	Mm.202152	NM_145462	ENSMUSG00000022177	Haus4	9430093H08Rik|AU016300|D14Ertd500e	HAUS augmin-like complex, subunit 4	protein-coding	6.2569261652657	6.3411600083133	5.98661557546877	6.44067836934425	6.89713301376384	6.5150333647695	6.92414748806598	6.98904832090204	0.81669193839476	0.000431415247872362	0.00684370535509401
Merged-chr4-53264004-4	chr4	53263905	53264105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033139, intron 1 of 1)	intron (NR_033139, intron 1 of 1)	1487.0	NR_033140	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	6.48406973217087	6.36816465427194	6.62682697469534	6.98649948376426	6.20155664119641	5.88974958611824	6.6648410408087	6.39446141458893	-0.487992701605842	0.0705216884029834	0.284658231758872
Merged-chr4-122808317-3	chr4	122808217	122808417	+	885.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-27910.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	3.84516045678898	3.89447150077606	3.635347568956	3.78418546891859	4.04597123246199	3.63144485288674	3.78068571015935	3.68924570985842	0.0440525701673094	0.924755636527818	0.972219978914297
Merged-chr4-132555147-4	chr4	132555053	132555253	+	973.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8914.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	5.03058275517969	5.25462017620914	4.62746576998867	4.78120470471299	4.62705840561293	5.07134710883896	4.64838063250486	4.66689301564435	-0.371424515037999	0.308004069489288	0.620392259385874
Merged-chr15-31611214-3	chr15	31611149	31611349	+	827.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356313, intron 5 of 5)	intron (NM_001356313, intron 5 of 5)	9133.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	3.98296060606937	3.52063107903692	3.65653111313977	3.74830116849316	3.41931668525166	3.60239660112447	3.88077766328757	3.48426682971433	-0.40732788604231	0.417994609511031	0.711628236434313
Merged-chr8-110619373-4	chr8	110619270	110619470	+	960.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151675, intron 1 of 17)	intron (NR_151675, intron 1 of 17)	803.0	NR_151675	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	4.77380767059093	4.75846262779109	5.01540103344242	4.6015644433278	4.92749824086325	4.70284946080607	4.78907762228629	4.91444137363811	0.126997139746109	0.707123492719956	0.882396225404233
Merged-chr5-149692663-3	chr5	149692546	149692746	+	992.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081204, intron 1 of 14)	intron (NM_001081204, intron 1 of 14)	14389.0	NM_001081204	381694.0	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	4.02073847587092	4.19421934560561	4.21538564378357	4.25468495660718	2.88241520142511	3.29036837064983	3.0809121733409	3.08819859484595	-5.56274631207961	2.77855040086342e-08	1.34723732277287e-06
Merged-chr9-107280402-3	chr9	107280268	107280468	+	998.5238039999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	9028.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	3.99798528394122	3.79411578450785	4.46819102687571	3.5372983098981	4.70402865335865	4.64095097830712	4.40687883246098	4.61368322525303	1.49814839530756	0.000965030713771236	0.0130663726793842
Merged-chr13-43787462-2	chr13	43787362	43787562	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	2350.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	3.45691957777691	3.12958075813602	3.18173717372985	3.02124975399048	3.23911662075997	3.41321987865759	3.28620402223204	3.2400817953771	0.366474744836565	0.503941688515701	0.770592637321386
Merged-chr6-39207531-2	chr6	39207399	39207599	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001033430)	promoter-TSS (NM_001033430)	-726.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	4.85988658233431	5.3876607446385	5.25799192293685	5.4452550876892	5.35045827830603	5.16021996851394	5.60294789848846	5.25436594519071	0.147891740694562	0.640044991143637	0.847901776002474
Merged-chr8-124250999-4	chr8	124250900	124251100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	19606.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	5.67508733185577	5.51118459572506	5.5559202804477	5.75045039218944	6.27558712001513	6.49351184539741	6.8351819554747	6.44525701104485	1.36452791594515	9.76895188054685e-08	4.19640450154161e-06
Merged-chr4-59362806-4	chr4	59362686	59362886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 10 of 16)	intron (NM_001163288, intron 10 of 16)	75847.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	5.21664641352125	5.15407379605282	4.95800373192495	5.20994050972686	5.60181851527072	5.55109543440213	5.79186135495785	5.8176797353997	0.954052950133429	0.000682534297781364	0.00991673990238411
Merged-chr5-90247317-3	chr5	90247224	90247424	+	849.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198010, intron 27 of 32)	ORR1A2-int|LTR|ERVL-MaLR	-23328.0	NM_001163456	231430.0	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	3.52640239855485	3.75292768557342	3.63648436690044	3.94397253859877	3.58921377731894	3.31625641254701	3.72168218731573	3.58090727497164	-0.546849658655022	0.280949889755686	0.593122915023133
Merged-chr1-91239293-4	chr1	91239198	91239398	+	804.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11006.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	3.69810453414692	3.51159076999042	3.41475830159734	3.67243373300632	3.5391813331827	3.59242591397995	3.91274718112488	3.84071339221547	0.43645240095871	0.370905362376882	0.675068605253279
Merged-chr2-61594964-4	chr2	61594876	61595076	+	770.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149323, intron 2 of 9)	MTD|LTR|ERVL-MaLR	1879.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	3.36614937296215	3.8497062605467	3.50038051865157	3.49653368597738	4.04303289743896	3.95913816160181	4.00260970349379	3.9751611064461	1.25731477275487	0.00713411160344601	0.0617704492471951
Merged-chr8-22477790-4	chr8	22477720	22477920	+	663.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001012667)	promoter-TSS (NM_001012667)	-941.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	3.78825608243083	3.88654115752571	4.37923319293031	3.78823108394195	4.19202053628328	3.91006857724068	4.16406998935363	4.04655721773569	0.300323024517055	0.506015525639406	0.771805771672231
Merged-chr1-154103227-3	chr1	154103134	154103334	+	796.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97953.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	3.68886122531716	3.22809309006494	3.34862293861939	3.37698988511846	3.18841360732156	3.40496390288984	3.09376901543714	3.1676110489825	-0.740206698362796	0.183684378775085	0.480761104819123
Merged-chr9-90067593-4	chr9	90067552	90067752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 7 of 10)	intron (NM_001312649, intron 7 of 10)	13385.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	5.42721613588584	5.66688378520527	5.55654423844337	6.37239181152467	6.19507945341052	6.10266211669927	6.33421331775894	6.18965468409649	0.567590778840961	0.0703391780167419	0.284066516428577
Merged-chr11-23633703-4	chr11	23633595	23633795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347242)	promoter-TSS (NM_001347242)	-64.0	NM_027860	71675.0	Mm.48031	NM_027860	ENSMUSG00000042208	0610010F05Rik	Kiaa1841|mKIAA1841	RIKEN cDNA 0610010F05 gene	protein-coding	8.42757292757043	8.55246857659903	8.67400415715498	8.80748302278276	8.48638849018972	8.16066015945835	8.70090277743762	8.31471573875323	-0.243691639289954	0.179341352109908	0.475573284473257
Merged-chr17-62623389-4	chr17	62623289	62623489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010109, intron 2 of 3)	intron (NM_010109, intron 2 of 3)	257928.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	6.49067238184386	6.35691828559112	6.24135429159441	6.61989633042434	6.00529925958955	6.51265963394124	6.59598557491998	6.17612613042183	-0.163188500836323	0.513696979668359	0.776626777135012
Merged-chr1-155006747-4	chr1	155006647	155006847	+	997.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76517.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	5.30898595009433	5.69059557160267	5.21541317228519	5.03225704375606	5.52202019109282	5.18205698647958	5.45240202198161	5.27552568424377	0.0834701839198772	0.792139078114652	0.919498816717593
Merged-chr8-109778531-4	chr8	109778429	109778629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009677)	promoter-TSS (NM_009677)	-54.0	NM_009677	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	7.64472629186943	7.89707465897554	7.54862118688869	7.7443317285459	7.58937997341268	7.61059876344679	7.95493192776229	7.50606914079839	-0.055988422385584	0.7661265476883	0.908503528989431
Merged-chr7-35649241-4	chr7	35649085	35649285	+	721.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-1703.0	NM_019746	56330.0	Mm.371609	NM_019746	ENSMUSG00000030417	Pdcd5	2200003D22Rik|AA408513|Tfar19	programmed cell death 5	protein-coding	3.11092372002113	3.25067787487066	3.11130783211668	2.909111957167	3.07732576191492	3.22282640870736	3.15947974656495	3.3852123238742	0.46915789774763	0.40512157429213	0.70211945603104
Merged-chr2-119167785-4	chr2	119167722	119167922	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177157)	promoter-TSS (NM_177157)	34.0	NM_177157	320415.0	Mm.86373	NM_177157	ENSMUSG00000046814	Gchfr	2010323F13Rik|GFRP|P35	GTP cyclohydrolase I feedback regulator	protein-coding	5.29197638665398	5.61919149140076	5.57848555058892	5.28676450305246	4.97254532282186	4.93980074462765	4.82044156268912	4.88052686777827	-1.01554498508055	0.00117301004348279	0.0152946843533727
Merged-chr16-16104476-4	chr16	16104381	16104581	+	965.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 5 of 18)	RMER1B|Other|Other	42370.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	4.63945909160176	4.87451654435894	4.26241561735329	4.18295713656631	4.6268275781815	5.22733077092445	4.90845030618252	4.9618164396685	0.897843641667245	0.0225730023933898	0.138775369318666
Merged-chr8-69124737-2	chr8	69124637	69124837	+	982.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	16216.0	NM_199364	211134.0	Mm.409446	NM_199364	ENSMUSG00000036306	Lzts1	F37|FEZ1|PSD-Zip70	leucine zipper, putative tumor suppressor 1	protein-coding	3.23525270214486	3.24639173024202	3.18119769155803	3.05361076842379	2.96601954589535	2.82423944333575	3.16869233451513	3.06313924288444	-0.67669500481744	0.250516830307678	0.561658607297159
Merged-chr8-95081023-4	chr8	95080907	95081107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028805)	promoter-TSS (NM_028805)	-194.0	NM_028805	74187.0	Mm.28382	NM_028805	ENSMUSG00000031787	Katnb1	2410003J24Rik|KAT	katanin p80 (WD40-containing) subunit B 1	protein-coding	8.96432473625278	9.07549909245128	9.028917787951	8.91106454044538	8.83312172404177	9.11805468493965	8.82085225355542	8.82727681505668	-0.11295434889282	0.452409767271469	0.736755126828417
Merged-chr5-135551121-3	chr5	135551024	135551224	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6002.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	3.52352520450863	3.65890850372729	3.62989664426153	3.36470673805553	3.56319479295726	3.4604210775946	3.39709667057067	3.81409882008494	0.0962212272961855	0.848591911578921	0.942786711901439
Merged-chr4-86689871-3	chr4	86689773	86689973	+	896.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19814.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	3.8849693477936	4.25354512333024	3.5525732049492	3.79695679447659	3.72204999500121	3.90393629692592	3.8196878549179	3.83337607421583	-0.225321602366837	0.636744333564955	0.846443644015687
Merged-chr2-72850035-4	chr2	72849960	72850160	+	787.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36343.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	3.72571472561014	3.89475556146151	3.54721893100159	3.45573572499075	4.29414855453183	4.00688865273305	3.71147843959555	4.10768485700554	1.12167179992499	0.0178991479746853	0.118758711194084
Merged-chr12-3420684-4	chr12	3420578	3420778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	intron (NR_030694, intron 1 of 2)	6069.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	5.00610870638082	4.96107710012504	5.13846309750746	5.12151440304885	5.27049798831616	4.53431775554543	5.08179850802399	5.25385735554576	0.0314767791587178	0.926245297161367	0.972866537762017
Merged-chr5-130159986-4	chr5	130159827	130160027	+	927.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11892.0	NM_001199059	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	3.68632687004348	3.44887152283947	3.91367028809443	3.43800383569784	3.24220086067377	3.64614173189744	3.4578399307663	3.63404190719703	-0.419504323370922	0.426389734745341	0.717850349569258
Merged-chr1-43361641-2	chr1	43361541	43361741	+	663.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84110.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	3.08168002214375	2.92460755485459	3.13891206845202	3.01093827853143	3.02813014051157	2.85926724745582	3.07053874066189	3.19149454766726	0.0216894422759247	0.970164802424761	0.9892892923197
Merged-chr16-31024503-4	chr16	31024388	31024588	+	801.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 2 of 3)	intron (NM_198626, intron 2 of 3)	56944.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	4.07132771194022	3.59829678462781	3.67658235934602	3.78475373763243	3.98109606525446	4.15252617877513	3.87284539595293	3.67464088426523	0.393396608094115	0.398660837095805	0.696795003527214
Merged-chr4-116651559-4	chr4	116651367	116651567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021473, exon 1 of 9)	5' UTR (NM_021473, exon 1 of 9)	207.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	5.04275384058639	5.31194027157386	5.90790152936895	5.31783252373038	5.14555875396895	5.52721627877551	5.4121355254707	5.73696590669163	0.0643296199338138	0.847342584437834	0.942272806800722
Merged-chr13-110672798-2	chr13	110672698	110672898	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-230701.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	3.08205457160315	2.98332770869502	3.08242789615599	3.25880066458406	3.05154925981052	3.19159031965036	3.12982401898098	3.13984690938738	0.0414956240546435	0.941418728645912	0.978908794154929
Merged-chr1-34855226-4	chr1	34855148	34855348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357425, intron 2 of 8)	MTD-int|LTR|ERVL-MaLR	5259.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	5.45668999350001	5.38009181289423	5.01430582976867	5.70661650410028	5.70378764494117	5.51367232615616	5.51350534752867	5.94819938386066	0.425725996030323	0.167863367717173	0.459799479965088
Merged-chr4-101264727-1	chr4	101264627	101264827	+	1000.0	f0_balb.idr	intron (NM_146145, intron 1 of 24)	CpG	555.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	5.28963000376356	5.10307417037203	5.3785638086988	5.04962956774653	5.56281629484731	5.49411626447635	5.069222790662	5.40279695045215	0.368477421498335	0.222975199559926	0.531069778572449
Merged-chr12-73682892-4	chr12	73682793	73682993	+	980.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	98097.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	5.75067716546936	5.67585898807367	5.41623687918935	5.24455338007883	5.58982370896141	5.62054899754212	5.604430370584	5.11491496329567	-0.0399215323354086	0.895653363021935	0.960926545377703
Merged-chr17-34169472-3	chr17	34169372	34169572	+	856.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16281.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	3.45561866954794	3.49181885665132	3.6776183064531	3.68369944089492	3.76126068256798	3.44323615385721	3.44376050758328	3.98848537361571	0.300493478839818	0.554274885633514	0.800680522882411
Merged-chr15-59822328-3	chr15	59822235	59822435	+	833.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27376.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	3.34408025204209	3.28792311927955	3.34448558128061	3.70414302321587	3.72424435973406	3.1889240264942	3.44615968292098	3.6601412725298	0.270802829205556	0.627684024675279	0.841282116569049
Merged-chr2-32134228-4	chr2	32134100	32134300	+	793.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16948.0	NM_172661	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	3.80731490297918	3.60488257703643	3.07886364993277	3.2790145165014	3.51040324475126	3.52429931603447	3.39585010409037	3.57132056726073	0.113754012351551	0.83747207478627	0.938339070778508
Merged-chr17-26509646-4	chr17	26509556	26509756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1184.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	8.03641493090262	7.85141685566962	7.68126922399227	8.00283240612909	7.77397471059406	8.11431149920691	7.93992083305621	7.8141463595686	0.0104305826620597	0.953296338151881	0.983371922023818
Merged-chr5-150836967-4	chr5	150836859	150837059	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115648.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	4.97999429779855	4.86410297081799	5.51178306642717	5.58668734750954	5.28074862390636	5.04127725383708	5.60437406898042	5.45583488107942	0.13249100928444	0.702961624641776	0.880452322371581
Merged-chr3-94902940-4	chr3	94902843	94903043	+	845.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15985.0	NM_008945	19172.0	Mm.368	NM_008945	ENSMUSG00000005779	Psmb4	Pros-27	proteasome (prosome, macropain) subunit, beta type 4	protein-coding	4.14704073660433	4.44531754936466	4.32717310962801	4.32726281873071	4.21431745501457	4.06179361870784	4.26549027548281	4.19240985435153	-0.32385563576511	0.409960002291829	0.705321062630042
Merged-chr3-65990755-4	chr3	65990658	65990858	+	939.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-32509.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	4.50207010453174	4.07868631169439	4.33061428796968	4.83311936682197	4.58118032015017	4.78417029353093	4.31201875859366	4.32801245070927	0.0727259258354163	0.864874244699043	0.949295808161007
Merged-chr17-78373975-4	chr17	78373846	78374046	+	974.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 16 of 16)	intron (NM_015800, intron 16 of 16)	44206.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	5.29802671730321	4.90778826506376	5.49201427388711	5.83372797495382	4.96678026460001	4.88874648403433	5.33028003054231	5.26511258360258	-0.578493845370334	0.102647419221882	0.351917942259349
Merged-chr1-82798531-4	chr1	82798429	82798629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30073.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	5.50173404644184	5.30001946746113	6.07259891793501	6.02432414466593	5.48609594961773	5.52845806591823	5.41656778812072	5.73467493736019	-0.387627038084779	0.212654519274168	0.517670706102327
Merged-chr9-14276173-4	chr9	14276065	14276265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030261)	promoter-TSS (NM_030261)	-136.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	9.30946046543197	9.40118734303715	9.4925302616825	9.51126705230893	9.46186132137595	9.40388614171366	9.56050289562179	9.37056200663751	0.0228729046775617	0.868576901171275	0.950762137632278
Merged-chr4-135891696-4	chr4	135891592	135891792	+	915.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-3497.0	NM_009924	12802.0	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	4.53936922688774	4.19735787844344	3.69882059290293	4.26641626974102	4.664245039599	4.47307164490968	3.87616153900027	4.46218024180866	0.46156302356738	0.336162410004786	0.646244323954596
Merged-chr6-92183979-4	chr6	92183850	92184050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025578)	promoter-TSS (NM_025578)	73.0	NM_025578	64658.0	Mm.87062	NM_025578	ENSMUSG00000014551	Mrps25	2810429N01Rik|Rpms25	mitochondrial ribosomal protein S25	protein-coding	5.44942197696945	5.53282007655887	5.67714306300368	5.50196382191341	5.21492989581743	5.28125832925236	5.27791362996578	5.17014270006172	-0.54363368538965	0.0514145559102827	0.235504335817451
Merged-chr16-58453121-3	chr16	58453039	58453239	+	994.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356484, intron 9 of 15)	intron (NM_001356484, intron 9 of 15)	44604.0	NM_028523	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	5.09262922437515	5.24916773833183	6.22645514150206	6.13288531198226	4.21719774509518	4.090873583873	4.68023466934732	4.39918158930781	-2.82024087979452	2.83341482154865e-10	2.02693099078403e-08
Merged-chr15-59728331-4	chr15	59728238	59728438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66621.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	8.9484036850492	9.01620402177557	9.05821082528792	8.85115661539125	8.90916098278211	9.08678629886941	8.94938734250746	8.84937814480572	-0.0215574668694345	0.882218910513195	0.955654262385787
Merged-chr13-28953868-4	chr13	28953762	28953962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009238)	promoter-TSS (NM_009238)	-163.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	6.41784218043918	6.50368725219527	6.21521858645653	6.74300233383257	5.72409857779875	5.79508485158061	5.42944569326113	5.02789906869685	-1.51803139068593	2.36850167543888e-07	9.37639492525385e-06
Merged-chr3-146110585-4	chr3	146110498	146110698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GAAA)n|Simple_repeat|Simple_repeat	-2562.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	7.72660031463719	7.75409344795336	7.12967706915066	7.45152038140344	7.6960431243929	7.6030521035739	6.93672169354325	7.4205796983412	-0.118470679881232	0.616250975148716	0.834887001277346
Merged-chr7-29853608-4	chr7	29853500	29853700	+	976.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173738)	promoter-TSS (NM_173738)	48.0	NM_173738	233057.0	Mm.296864	NM_173738	ENSMUSG00000050855	Zfp940	-	zinc finger protein 940	protein-coding	4.92336234802314	5.03743117047796	5.05623510280258	4.71490937438019	4.60683432635881	4.83145493250983	4.99983563670673	4.92086089597723	-0.177156370613888	0.601528866614553	0.827133488921953
Merged-chr5-43187509-4	chr5	43187404	43187604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 5 of 7)	ORR1F|LTR|ERVL-MaLR	-45959.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	6.56096582691824	6.65028790687499	7.4800138481052	7.20754929258956	7.42879186475264	7.30378372629124	7.47750580398473	7.04957894528775	0.395223974182507	0.123449227464419	0.389615242393024
Merged-chr1-16111014-3	chr1	16110953	16111153	+	792.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133832, intron 2 of 5)	intron (NM_133832, intron 2 of 5)	5171.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	3.21509827209229	2.99821842861315	3.10455053046577	3.27081729409742	2.91277918417835	3.09130535368251	2.84131077881062	3.10292963471263	-0.697191624728731	0.239304505251984	0.549703033561985
Merged-chr8-120537289-4	chr8	120537198	120537398	+	986.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145896)	promoter-TSS (NM_001145896)	-111.0	NM_001145896	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	4.63311026799617	4.66902530622083	5.15644375750263	5.51754880483502	5.28585567217568	5.20138260071585	4.56687874627943	5.12185774626172	0.0217018210231975	0.957286387365929	0.984815156534365
Merged-chr11-114789371-4	chr11	114789313	114789513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001102615, exon 18 of 20)	exon (NM_001102615, exon 18 of 20)	6479.0	NM_028055	72014.0	Mm.38347	NM_028055	ENSMUSG00000000202	Btbd17	1500005I02Rik|Tango10a	BTB (POZ) domain containing 17	protein-coding	5.37374881012707	5.57990007600144	5.48742368780164	5.40430851537789	5.28585667706706	5.51910276563562	5.25734864565574	5.37094414354285	-0.185513913649654	0.505565821693186	0.771488881809541
Merged-chr2-59332741-4	chr2	59332638	59332838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 11 of 20)	intron (NM_175464, intron 11 of 20)	53944.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	5.4567162421427	5.55367042090691	5.60294086502849	5.68066250237642	5.8567561195356	5.80612780480255	6.20459604943206	5.72931430369959	0.535913631087297	0.0436848724199531	0.212773881399723
Merged-chr15-77798849-3	chr15	77798759	77798959	+	758.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	-41849.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	3.22084389957049	3.18992945343573	3.16682028677495	3.0412312756571	2.9876590655624	3.03028770203912	2.84567743142171	3.10827171258315	-0.644686103294577	0.268703975810314	0.580332587130134
Merged-chr16-33923095-4	chr16	33922979	33923179	+	890.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	43959.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	4.25795617647059	3.77870563523547	4.02733440934268	4.18475054541375	4.02996275718128	4.04501004469461	4.35880014700507	4.4144340240612	0.357199311946152	0.408450609393921	0.70438176546703
Merged-chr11-50210277-4	chr11	50210202	50210402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290769, intron 1 of 7)	CpG	518.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	7.67998209195009	8.37663662650901	7.96551898470812	7.82367423046579	8.23724569567492	8.42076439856831	8.17560264053199	8.00864915150992	0.294507137219443	0.148349657853118	0.430071295027352
Merged-chr1-138619705-3	chr1	138619610	138619810	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311148)	promoter-TSS (NM_001311148)	47.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	6.12413501761857	6.05520238485681	6.30763890616363	5.79427219904135	5.67029778940537	5.96695267635512	6.03380456357065	6.06052120723725	-0.212620484003974	0.419834040944458	0.712900596411698
Merged-chr2-170451092-3	chr2	170450984	170451184	+	777.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23239.0	NM_029815	76960.0	Mm.240850	NM_029815	ENSMUSG00000013523	Bcas1	2210416M21Rik|9030223A09Rik|AI841227|NABC1	breast carcinoma amplified sequence 1	protein-coding	3.08077123010252	3.0416058710612	3.01592439939268	3.2558314263504	3.3443000044499	3.42653525937232	3.13219585811207	3.25748309075021	0.678842577841891	0.225205380013425	0.533565878802898
Merged-chr15-80711872-4	chr15	80711695	80711895	+	885.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144812, intron 1 of 24)	CpG	482.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	3.96576084225594	3.72042396682835	3.96634458017407	3.83213552541454	4.22025577031252	4.23012193424462	3.74006719392805	4.05812204683452	0.570165958432443	0.195178050877528	0.495943926980143
Merged-chr18-25168866-4	chr18	25168781	25168981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142698)	promoter-TSS (NM_001142698)	-4.0	NM_001004361	66648.0	Mm.263189	NM_001004361	ENSMUSG00000024269	Tpgs2	5730437P09Rik|5730494M16Rik|AI666318|Pgs2	tubulin polyglutamylase complex subunit 2	protein-coding	7.78295926256792	7.91371575049485	8.55651912842263	8.30143299857017	7.49677958151412	7.92957819302903	7.81661382562374	8.09655065825418	-0.423365049231314	0.0618461408606129	0.263130064750231
Merged-chr10-94405680-4	chr10	94405556	94405756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	L2c|LINE|L2	93707.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.27139164729275	5.11208986414919	5.33181627752432	5.42378501761702	5.11123046590112	5.44622372525819	4.73297032593919	5.612594859051	-0.0575810766330551	0.864532546492462	0.949184219382502
Merged-chr9-121877282-4	chr9	121877196	121877396	+	783.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19500.0	NM_001357840	56295.0	Mm.347915	NM_019814	ENSMUSG00000038412	Higd1a	2210020B17Rik|7420700H20Rik|AI303276|AW049839|HIMP1|Hig1	HIG1 domain family, member 1A	protein-coding	3.45997309555675	3.33977529538508	3.33757138895244	3.27819800852824	3.71494105319072	3.84547070904795	3.55830310476993	3.81485759162188	1.26043587878024	0.00896237331942642	0.072946825643062
Merged-chr5-77229170-4	chr5	77229081	77229281	+	841.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17710.0	NM_001289768	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	4.20641242225582	4.03255496765294	4.16249065826694	3.85852545540737	4.54369624420754	3.7940743436473	4.14404287604605	4.24741661057686	0.40941508174007	0.35980607777983	0.665475022577823
Merged-chr7-79793002-5	chr7	79792937	79793137	+	800.085693	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008588, exon 1 of 2)	exon (NM_008588, exon 1 of 2)	553.0	NM_008588	17292.0	Mm.1404	NM_008588	ENSMUSG00000030544	Mesp1	bHLHc5	mesoderm posterior 1	protein-coding	3.17999948039592	3.14511781516468	3.53312569171393	3.33521706081861	3.44508885973012	3.65024140703542	3.41232616702563	3.62989708796576	0.773556622500846	0.137888094377819	0.413060757952897
Merged-chr1-139424125-3	chr1	139424020	139424220	+	828.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172643, exon 2 of 11)	exon (NM_172643, exon 2 of 11)	1737.0	NM_172643	226470.0	Mm.119711	NM_172643	ENSMUSG00000033964	Zbtb41	8430415N23Rik|9430031N01|9830132G07Rik|AI316857	zinc finger and BTB domain containing 41	protein-coding	3.204440080536	3.39167295636599	3.51868874794597	3.31528343591448	3.76209034975987	3.69132449678738	3.79938259111963	3.67432222613346	1.21417329115238	0.0122514584283229	0.0912373466697629
Merged-chr10-80929920-4	chr10	80929802	80930002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008655)	promoter-TSS (NM_008655)	-189.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	8.4490549355281	8.85004889606623	8.1729657502055	8.00351567231672	8.83253952639589	9.04009693541668	8.82170085066546	8.57285708829109	0.525685073607617	0.0148160312140373	0.103910758280024
Merged-chr9-118762265-4	chr9	118762187	118762387	+	871.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	50595.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.58987515116872	4.389206974294	4.25204643205175	4.14378373962643	4.62779967375919	4.38014935248694	4.28077776644865	4.69419475851757	0.395139071937185	0.311067442839491	0.623141661428349
Merged-chr12-72760493-4	chr12	72760395	72760595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008910)	promoter-TSS (NM_008910)	-716.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	5.5470537148877	5.98380177262282	6.10807618415554	5.69363932033302	5.41910707377981	5.88905240899717	6.0766598155755	5.75935260365725	-0.077561631756763	0.790643860900529	0.918840742585233
Merged-chr1-172217318-4	chr1	172217190	172217390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009813, intron 2 of 10)	intron (NM_009813, intron 2 of 10)	2605.0	NM_009813	12372.0	Mm.12829	NM_009813	ENSMUSG00000007122	Casq1	CSQ|CSQ-1|CSQ1|sCSQ	calsequestrin 1	protein-coding	5.93366285401578	5.96295997204982	6.1475605600104	6.06263466258374	6.27852973916217	6.1778812371206	5.92736465255181	5.99813858388906	0.124065012003096	0.604694898690601	0.828509474255204
Merged-chr3-28109519-3	chr3	28109464	28109664	+	834.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 20 of 25)	intron (NM_008875, intron 20 of 25)	125393.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	3.45944742875078	3.44787277876875	3.73101353983974	4.15901819448091	3.49350833199161	3.51253377298553	3.66594127064867	3.51698741208271	-0.633093525728344	0.240506298172053	0.551073267231004
Merged-chr2-160336589-3	chr2	160336523	160336723	+	825.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9129.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	3.32300337299507	3.25212625245663	3.14482747305788	3.25504710469572	3.13232554887318	3.43688473356113	3.3104894018537	3.37600148537827	0.243942143283342	0.646350290713992	0.851295585787822
Merged-chr1-151958672-4	chr1	151958571	151958771	+	971.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 3 of 5)	L1M3|LINE|L1	131649.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	5.39937910330777	5.06819095816365	4.79621057651172	5.57666821220507	5.41164903271595	5.60150225368585	5.28584096533931	5.5806660090691	0.369059375408239	0.265083686209268	0.576956662317123
Merged-chr3-105016408-3	chr3	105016308	105016508	+	907.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	L1ME2|LINE|L1	36545.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	4.07473599439902	4.00638539993063	3.64183574218424	4.03965731172974	3.90048191822486	3.57323187216295	3.57047457394601	3.58147903489952	-0.823948056695323	0.0925228770471078	0.332721363887815
Merged-chr7-25265931-2	chr7	25265831	25266031	+	772.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C2|LTR|ERVK	-1768.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	3.01321894877742	3.46065562918474	3.60793277490926	3.18487489171433	3.42248248352599	3.33429569674033	3.38786992924956	3.65239391206197	0.423667837768255	0.446385765899255	0.732088059065582
Merged-chr11-100719436-4	chr11	100719338	100719538	+	978.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 2 of 5)	intron (NM_001305003, intron 2 of 5)	5588.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	5.36372743004913	5.29643894701615	5.60653984767825	5.57286370120714	5.27647254966432	5.47926099076743	4.88451414682002	5.62673651032585	-0.227867809766474	0.466643674181587	0.746440951133739
Merged-chr3-108256171-4	chr3	108256072	108256272	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011967)	promoter-TSS (NM_011967)	-754.0	NM_011967	26442.0	Mm.208883	NM_011967	ENSMUSG00000068749	Psma5	ZETA	proteasome (prosome, macropain) subunit, alpha type 5	protein-coding	6.1598770883603	5.75708750419484	5.79788489904038	5.34788379116511	6.09614869878311	6.04569281876064	5.84006289871668	6.1189228384477	0.407666096485139	0.152524459888207	0.436759807313138
Merged-chr2-37359253-4	chr2	37359166	37359366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026176)	promoter-TSS (NM_026176)	66.0	NM_026176	67466.0	Mm.30709	NM_026176	ENSMUSG00000009030	Pdcl	1200011E13Rik|AW108059|PhLP1	phosducin-like	protein-coding	6.90238234385015	7.1952075054669	6.72549443570636	7.03625064366599	7.36835444798024	7.46965580442965	7.35397721511983	6.89870225627297	0.421719138662924	0.0511213454041676	0.234638017733481
Merged-chr11-23895236-4	chr11	23895153	23895353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172555)	promoter-TSS (NM_172555)	17.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	7.32894205833064	7.30139181941522	7.16854458080838	7.33261695107887	7.23079759779164	6.9281407992166	7.41824832373667	7.32510186151263	-0.0634505911449613	0.741309741124827	0.898139463026673
Merged-chr2-170330006-4	chr2	170329908	170330108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26353.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	6.56060157216398	6.48906853798713	6.74151285741031	6.67328266709175	6.40152972295279	6.54767241283679	6.72111636550529	6.54086286653203	-0.101810208331005	0.631274769901694	0.843330771697841
Merged-chr16-29772794-4	chr16	29772745	29772945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	193511.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	6.0142201230244	6.03396221351904	6.31742336594622	6.80947774731264	5.97792854210901	5.97220167301413	6.37104420555787	6.23918314383598	-0.31443267187858	0.272911051744876	0.584364672732811
Merged-chr9-111289669-4	chr9	111289569	111289769	+	904.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	17824.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	4.42111693195515	4.53021462075845	4.32607902356427	3.52373882876548	4.91737648441876	4.81046314238365	5.03790869270358	4.88040126740739	1.46421992157273	0.000887769844845808	0.0122486082159875
Merged-chr14-69804862-4	chr14	69804771	69804971	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153514, intron 1 of 9)	intron (NM_153514, intron 1 of 9)	674.0	NM_153514	246710.0	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	4.89648313777174	5.06860921663375	4.66350633505631	5.0042296576221	5.04867996528039	4.7540088867418	5.0389987166499	4.74316801526739	-0.0269650392499021	0.935833588993006	0.976696808418252
Merged-chr3-97768102-4	chr3	97768012	97768212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110360)	promoter-TSS (NR_110360)	-98.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	6.6488575672181	6.73460947150225	7.34991059048882	6.49926427601049	6.59813390423173	6.91893111902214	6.72219060707191	7.03765579189145	-0.022337428687103	0.930946281622102	0.97518506813215
Merged-chr11-69257991-4	chr11	69257886	69258086	+	969.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20964.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	4.80883584368234	4.94077859545319	4.72919104485455	4.75805663532749	5.04054083348644	5.25983187314352	5.06365842517805	4.987732898692	0.55051909257888	0.0796409046616463	0.305642958586905
Merged-chr10-82866512-4	chr10	82866426	82866626	+	975.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025499)	promoter-TSS (NM_025499)	-100.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	4.59976089143352	4.71144602086626	5.02942770974804	5.09621970840245	5.02708066253833	4.86333033772154	5.5307762167247	5.32288189778459	0.628191314503852	0.0792987526872134	0.304839377701618
Merged-chr14-73389288-4	chr14	73389185	73389385	+	845.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3996.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	4.39410770779172	4.2067415381869	4.08433986682832	4.53842253462734	4.0810009764049	4.25859252458248	4.01686272003459	4.2241399339516	-0.466429959677272	0.257986797543361	0.569823559230946
Merged-chr5-113812218-4	chr5	113812101	113812301	+	916.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6B_Mm|LTR|ERV1	-11849.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	4.48397597556939	5.07597660181985	4.72236056023718	3.43394767191482	4.66380074940721	4.99883757161301	4.50581984268603	4.19225701501433	0.0725770966669367	0.923921118374646	0.971874776059645
Merged-chr10-79669152-5	chr10	79669076	79669276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148934)	promoter-TSS (NM_148934)	-234.0	NM_148934	110012.0	Mm.22623	NM_148934	ENSMUSG00000020308	Tpgs1	AV005629|Gm16517|Gtrgeo22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding	4.79531995731701	4.93824342038476	4.94772137478919	4.68747369934736	5.0639627583317	5.22350496614593	5.29030176990563	5.04727851670189	0.629713384538657	0.0443472007841946	0.214748197640633
Merged-chr15-36540941-3	chr15	36540851	36541051	+	591.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025712, intron 4 of 13)	intron (NM_025712, intron 4 of 13)	14622.0	NM_001347022	66696.0	Mm.253627	NM_025712	ENSMUSG00000013611	Snx31	4631426E05Rik	sorting nexin 31	protein-coding	3.31415956494024	3.23703064110692	3.20392223701682	3.51884074462685	3.00501204407148	2.90756850141886	3.30119612290219	3.08137970102201	-0.986523788863716	0.0937279827139898	0.334879233089001
Merged-chr1-180957267-4	chr1	180957164	180957364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 8 of 22)	MTD|LTR|ERVL-MaLR	14746.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	8.68137304293278	8.65031090023387	8.85573256921668	8.94365227705164	8.32873263430582	8.36967391919983	8.71429929572052	8.41396669793498	-0.411362647114257	0.014388320700575	0.101859161297731
Merged-chr16-92715640-4	chr16	92715537	92715737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-18308.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	5.5706259359302	5.49106404216505	5.31407249120928	5.73518290737667	5.37132293657982	5.28795376813012	5.25605186080089	5.8026923209648	-0.176560813592141	0.555843182197522	0.801709460296605
Merged-chr13-74770667-4	chr13	74770567	74770767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301156)	promoter-TSS (NM_001301156)	69.0	NM_001301156	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	7.56838979060027	7.56228727389199	7.06053549305072	7.85200080465675	7.65427001434541	7.54483807548846	7.89896979314364	7.58214815811728	0.163664775217031	0.450995701810205	0.73571432308456
Merged-chr6-37464121-1	chr6	37464021	37464221	+	1000.0	f0_c57.idr	Intergenic	Lx8|LINE|L1	-21973.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	3.74567514720226	3.86574483789135	3.9015684376973	2.50642659928601	5.85014422032597	6.24665006403018	6.05090115207557	5.96512603434016	5.91996188643049	1.33914556274908e-06	4.56290292058001e-05
Merged-chr15-97673066-4	chr15	97672950	97673150	+	997.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32772.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	5.49586627917029	5.61934238651351	5.49682335071066	5.59382030332061	5.19224976448552	5.08204277601691	5.33034578890843	5.16236914627617	-0.64671492773455	0.0214696334457296	0.134180967515461
Merged-chr6-125378320-4	chr6	125378243	125378443	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198604, intron 3 of 16)	intron (NM_198604, intron 3 of 16)	2161.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	5.69386840368261	5.53947276719536	5.25983206722486	5.60099378203104	4.77565223440908	5.05084572617784	4.96437751083999	4.94666670102183	-1.13849792274146	0.000201610098243196	0.00366175176903608
Merged-chr11-4219642-3	chr11	4219531	4219731	+	890.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028022, intron 2 of 8)	intron (NM_028022, intron 2 of 8)	1380.0	NM_028022	71962.0	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik|Castor1	GATS protein-like 3	protein-coding	3.89507127917043	3.85229438014374	3.53137222348649	3.73719783693947	3.64702404567194	3.70692350453992	3.57674374728985	3.84723298481522	-0.19536342329531	0.67773891883396	0.867815982091561
Merged-chr17-68004082-4	chr17	68003954	68004154	+	836.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172964)	promoter-TSS (NM_172964)	54.0	NM_172964	268970.0	Mm.9935	NM_172964	ENSMUSG00000024043	Arhgap28	AU044757|AW550892|E130310N06	Rho GTPase activating protein 28	protein-coding	3.22777342176871	3.3186105741867	3.55032444704141	3.51982789810264	2.96208555250975	3.27727267789422	3.43723434832715	3.16424905508492	-0.733139805102451	0.197646364014809	0.499044730396766
Merged-chr8-75193232-4	chr8	75193150	75193350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-20694.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	5.09185323497903	5.30001608098706	5.34838423794579	5.54878780883739	5.36431734656732	4.81837212315019	5.32172564122069	5.53230592096758	-0.099497228194871	0.757967672470323	0.904926340425875
Merged-chr12-12302015-4	chr12	12301913	12302113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	39874.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	7.73834854051074	7.83326491378283	7.96737955325206	8.01443055053454	7.8357249056622	7.63877448078541	7.68581603498438	7.67668819697371	-0.237577813091234	0.161821380391649	0.450813465162315
Merged-chr1-78536917-4	chr1	78536810	78537010	+	735.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026713, intron 6 of 6)	intron (NM_026713, intron 6 of 6)	25850.0	NM_026713	68393.0	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	4.40589481859735	4.10702408112728	4.16056711132575	4.13886133628956	3.96826448114524	3.72532253196152	4.34814536698069	4.11196716691499	-0.376649928067339	0.389112736257866	0.689374802932542
Merged-chr11-93963210-4	chr11	93963087	93963287	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008704, intron 3 of 4)	intron (NM_008704, intron 3 of 4)	5334.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	5.0676254537464	5.28753884973896	4.9886375271397	5.03295055137314	5.76398451719393	5.98714932071198	5.84725281259524	5.91400709127814	1.33923536368196	8.77537350818624e-07	3.10912051239019e-05
Merged-chr15-36852626-3	chr15	36852505	36852705	+	785.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-55676.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	3.41088200415956	3.83279572937236	3.83833047756999	3.7890132329905	3.40854561738481	3.5883128355938	3.57442417740114	3.69215068395527	-0.532967411016728	0.282611027365415	0.594770434571737
Merged-chr10-57486821-4	chr10	57486667	57486867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045353)	promoter-TSS (NR_045353)	382.0	NM_008297	15500.0	Mm.261395	NM_008297	ENSMUSG00000019878	Hsf2	AI661205	heat shock factor 2	protein-coding	5.29244365576259	5.29204585111277	5.80759132050299	5.53769969055471	5.46237880292076	5.33760170338382	5.26729692745403	5.46700896138073	-0.193364482797354	0.508979550310552	0.773835474540333
Merged-chr7-127776537-4	chr7	127776448	127776648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178029)	promoter-TSS (NM_178029)	-841.0	NM_178029	233904.0	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	5.04747943632647	5.42112274642304	5.28024639323034	5.16947573828774	5.43395114661382	5.2945267228183	5.28385128865896	5.24596592943277	0.160112593595947	0.583122689644901	0.816904287158464
Merged-chr12-83597236-4	chr12	83597140	83597340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183154)	promoter-TSS (NM_183154)	-18.0	NM_001359166	217695.0	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	8.09075614976236	8.14508237358147	7.90876242472048	8.12021324881987	7.95191688245341	7.88877730819384	8.08467344133157	8.02192750437554	-0.108770761557758	0.497746694480424	0.767162789970597
Merged-chr2-118256801-5	chr2	118256702	118256902	+	999.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027759, exon 1 of 11)	5' UTR (NM_027759, exon 1 of 11)	164.0	NM_027759	71313.0	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	4.83438748154025	4.93783164235006	4.94730063011914	4.64268651104338	5.23650094720556	5.25542144714159	5.26342211338632	4.87040690243626	0.658121511964378	0.0404500187198692	0.203222473744177
Merged-chr9-57645680-4	chr9	57645577	57645777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007783)	promoter-TSS (NM_007783)	-24.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	7.36872871197258	7.51926487016647	7.41977452563574	7.12874061993612	7.50885912370782	7.39662005607709	7.53831035233386	7.65366179192051	0.228608791999448	0.220510490257067	0.528451996377299
Merged-chr14-62800204-3	chr14	62800103	62800303	+	973.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045503, intron 2 of 6)	MLT2B4|LTR|ERVL	-37487.0	NM_175546	268752.0	Mm.1960	NM_175546	ENSMUSG00000014547	Wdfy2	5830485M08|B130024L21Rik|ProF|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding	3.46847746126954	3.53806395456066	4.06421029750403	3.85664984192611	3.31498377414639	3.39544611223462	3.45588593030713	3.34517509726965	-1.26600689519902	0.0175200698582717	0.117018021248186
Merged-chr10-86065173-4	chr10	86065072	86065272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013722, intron 10 of 13)	intron (NM_013722, intron 10 of 13)	-30682.0	NR_038024	78170.0	Mm.444790	NR_038024	ENSMUSG00000112493	4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	6.28201343211534	6.51081607615884	6.87517028993527	6.61625282542212	7.34049100702007	6.83241250394976	7.3607885016952	7.23143074671522	0.86896732398059	0.000130405155079686	0.00253817569959448
Merged-chr17-86972506-2	chr17	86972406	86972606	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	9395.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	2.56248904835872	2.62965257569319	2.77160921769903	2.72644510525937	3.00070132192894	2.94218405516193	2.82432111150589	2.95014396337632	1.15971394821454	0.0638377401118362	0.268345571579938
Merged-chr5-97087424-6	chr5	97087314	97087514	+	963.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_080708, exon 16 of 16)	exon (NM_080708, exon 16 of 16)	24182.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	3.89531960914363	3.86758652972184	3.68540811654849	3.80143237087795	3.98584177285304	3.74434028698993	3.97190216330058	3.94116254115594	0.296288360660258	0.498365052786354	0.76759838054097
Merged-chr2-12406886-4	chr2	12406787	12406987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355537, intron 2 of 13)	intron (NM_001355537, intron 2 of 13)	12573.0	NM_001355537	66960.0	Mm.34059	NM_024185	ENSMUSG00000026767	Mindy3	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958|Fam188a	MINDY lysine 48 deubiquitinase 3	protein-coding	6.51418633214875	6.50806104734025	6.69798222797939	7.03490032191914	7.15509354330691	6.96436579929214	6.99945979649408	7.06496631250252	0.451714385072047	0.0422307305723055	0.208447195840504
Merged-chr2-29673028-4	chr2	29672934	29673134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	53314.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	6.19395989559811	6.03378407709674	6.0587207683131	6.0685181355497	6.15317847609076	5.79940573564773	5.85240101438793	5.72766063160964	-0.282111609550309	0.258460224758722	0.570369121898476
Merged-chr12-46819514-4	chr12	46819415	46819615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021361)	promoter-TSS (NM_021361)	-740.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	7.73386015108853	7.67266815586194	7.68091400158716	7.84585057749125	7.12951440634739	7.24862433336681	7.37067234019472	6.77710455404213	-0.78843938102707	5.62862345717532e-05	0.00125278232976323
Merged-chr16-93711153-4	chr16	93711074	93711274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026700)	promoter-TSS (NM_026700)	-733.0	NM_026700	70028.0	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	6.13410011209741	6.00296976794996	6.11506325353567	5.5101964207701	6.24501906840322	6.45975224378263	6.04268070017032	6.13078655372806	0.442278787541134	0.102390030952106	0.351483964945259
Merged-chr19-32646177-4	chr19	32646072	32646272	+	749.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360403, intron 7 of 11)	intron (NM_001360403, intron 7 of 11)	26167.0	NM_011864	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	4.09915862169098	4.17469177913618	4.23761339419817	4.70738580853568	3.97103483469518	4.06842442751111	3.92993856079494	4.19070580300786	-0.782330933605101	0.0760606048757583	0.297861684493458
Merged-chr16-33832846-4	chr16	33832784	33832984	+	861.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	3219.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	3.88472648362376	3.81080045639705	3.88531251005206	3.59967976649835	3.5562892254102	3.90741682637427	3.82076411056771	3.73283944851023	-0.105680374748481	0.821135017417724	0.93149474715163
Merged-chr1-106138873-2	chr1	106138765	106138965	+	654.166626	f0_balb.idr|f0_c57.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	32659.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	3.89750377479441	3.74659452827609	3.99181763866681	3.89352005242375	3.7903186994465	3.68450491147555	4.0180805375109	3.89576988555349	-0.0906793484039722	0.838306953231829	0.938633191613918
Merged-chr9-110888022-4	chr9	110887923	110888123	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153354, intron 8 of 25)	intron (NR_153354, intron 8 of 25)	7701.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	5.50632626531045	5.81061133542596	5.58179154099156	5.40251926688953	5.10395528343892	4.99278701622325	4.98868657691088	4.84954333656455	-1.07268770461728	0.000488131813452407	0.00758287524001067
Merged-chr2-180172347-3	chr2	180172256	180172456	+	877.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019822, intron 2 of 9)	intron (NM_019822, intron 2 of 9)	768.0	NM_019822	56436.0	Mm.316654	NM_019822	ENSMUSG00000039041	Adrm1	1110063P18Rik|2510006J17Rik|AA408205|ARM-1|AU043535|Arm1|Gp110|Rpn13	adhesion regulating molecule 1	protein-coding	3.20327950138209	3.46049012859701	3.601676587242	3.40576409038079	3.46329617540701	3.38060108548673	3.48585734571609	3.54975692142337	0.160506296740744	0.752181175176911	0.902363969099289
Merged-chr17-55944956-3	chr17	55944859	55945059	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310337, intron 1 of 3)	intron (NM_001310337, intron 1 of 3)	300.0	NM_146249	240120.0	Mm.441018	NM_146249	ENSMUSG00000062101	Zfp119b	-	zinc finger protein 119b	protein-coding	4.71605888897924	4.93281647114475	4.5360660555541	4.26709614613676	5.03505307041834	5.5374017901347	5.17799469905849	5.25729886245903	1.25955500279359	0.000398173461314835	0.00641938591232813
Merged-chr14-87417129-6	chr14	87417055	87417255	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253755, intron 1 of 11)	CpG	572.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	5.27215787526346	4.89244150783785	5.27307299970178	5.31425118683538	4.9932275049636	4.7720595486903	4.96991588183224	4.67856078006895	-0.651448538694753	0.0480286384567395	0.226114852616725
Merged-chr17-69178878-4	chr17	69178749	69178949	+	823.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	19493.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	3.70130692748631	3.56145442028997	3.59613583958812	3.65026437581334	4.05622494911258	3.65580969395932	3.58223920633821	3.41793511749703	0.261156107591878	0.60343467975705	0.82809560771388
Merged-chr11-83577231-4	chr11	83577126	83577326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011338, intron 1 of 3)	intron (NM_011338, intron 1 of 3)	1410.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	6.40853745107926	6.30212415377467	6.72293667353974	6.22043875609119	5.34255597387152	5.62036913573388	5.79221554941407	6.3214023472695	-0.943478225351266	0.00184931681004773	0.0220199065193522
Merged-chr2-153263233-4	chr2	153263147	153263347	+	848.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080463, intron 6 of 6)	intron (NM_080463, intron 6 of 6)	21715.0	NM_080463	140484.0	Mm.293761	NM_080463	ENSMUSG00000046020	Pofut1	O-FucT-1|mKIAA0180	protein O-fucosyltransferase 1	protein-coding	4.38936499878469	4.59496821106604	4.07516769525469	3.80287476687573	4.09789141643407	4.30044198522788	4.32931410969459	4.1226387242988	-0.0715143518457724	0.873541069893515	0.952619493264257
Merged-chr18-36670321-4	chr18	36670218	36670418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164406)	promoter-TSS (NM_001164406)	-7.0	NM_025291	24068.0	Mm.29058	NM_025291	ENSMUSG00000006050	Sra1	AA959952|Sra|Srap|Straa1|Strra1	steroid receptor RNA activator 1	protein-coding	7.24125789762806	7.16726618814635	6.94046838402863	7.00769887436185	7.21732426064639	7.31899622275347	7.62864610929563	7.07740231696002	0.317846457886352	0.121379141151974	0.385883071389947
Merged-chr7-19235229-4	chr7	19235117	19235317	+	956.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207525, intron 1 of 1)	ID_B1|SINE|B4	6828.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	4.58000682446862	4.18690185279645	4.86409500166156	4.25051371170196	4.41098012608503	4.7536275107341	4.8080405424419	4.40850448875413	0.262353225057725	0.517095057002432	0.778652850195737
Merged-chr2-20943456-2	chr2	20943356	20943556	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128084, intron 1 of 24)	intron (NM_001128084, intron 1 of 24)	24265.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	3.39776496947134	3.23367944451629	3.45717364673197	3.66167674982933	3.79845501895676	3.7366713465097	3.50003119677641	3.51171926847111	0.595621195214954	0.251524101129987	0.56287087730158
Merged-chr16-89707673-4	chr16	89707579	89707779	+	926.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110673.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	4.57232088379118	4.65981940234825	4.61526943862023	5.05536349035345	4.64158508725897	4.66141060939234	4.91896955670175	4.76840106355386	-0.0319260635494462	0.929907449434952	0.974727857709636
Merged-chr7-142373876-3	chr7	142373779	142373979	+	947.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347541)	promoter-TSS (NM_001347541)	-133.0	NM_001347541	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	4.03399573828704	3.38441949470188	3.98340268949447	3.58447023368112	4.54309946454426	4.47714082623487	4.4006081722711	4.1745701717034	1.69168877470491	0.000241941054139561	0.00424793347128757
Merged-chr3-98061309-4	chr3	98061259	98061459	+	834.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	47821.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	3.45702541752563	3.81825911228144	3.19163161272143	3.60000087150313	3.80956096859774	3.74459072091343	3.6638524482996	3.67695983943473	0.566200019446699	0.270633989163982	0.58243909949623
Merged-chr9-44482294-4	chr9	44482199	44482399	+	888.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357490)	promoter-TSS (NM_001357490)	-526.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	4.01168647900325	3.97205625820112	3.69704582429969	4.25229974781686	4.04873202819793	3.98455190422054	3.99502171563529	3.75317795592587	-0.165439811316997	0.717414760943428	0.886989374323744
Merged-chr10-81365859-4	chr10	81365753	81365953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014836)	promoter-TSS (NM_001014836)	-33.0	NM_001014836	432479.0	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	6.40451136681015	6.20690445590606	5.88197445049845	6.25209468242468	6.10760425328575	6.00973317431522	6.40516914203948	6.14640390068093	-0.0438130059993422	0.858391094151959	0.946576014812915
Merged-chr11-85140172-4	chr11	85140068	85140268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029934)	promoter-TSS (NM_001029934)	-213.0	NM_001029934	237898.0	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	8.62712098472521	8.84100473074729	8.15060318784737	8.31099937999266	8.64680827591526	8.73766404290659	8.50614892804635	8.56827393766527	0.135766835327408	0.478577649026791	0.754578204857301
Merged-chr7-80803378-4	chr7	80803252	80803452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016721)	promoter-TSS (NM_016721)	-21.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	8.44407598825973	8.5498932705558	8.60443623415676	8.45543766382967	8.40486219753811	8.57596821094681	8.64365982730149	8.48039112210615	0.0167829465333116	0.911457517576859	0.96695373445261
Merged-chr12-41186177-3	chr12	41186070	41186270	+	688.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	162080.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	3.4344146466239	3.47210482651479	3.66397152629576	3.57392224096441	2.9957625991532	3.61545040390967	4.15503050195192	3.85639411968188	0.567524580144383	0.347581399965	0.655546119710951
Merged-chr6-57743530-4	chr6	57743427	57743627	+	933.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	41072.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	4.40830487298838	4.43123017081369	4.58914411360657	4.57239111046994	4.53479752543426	4.92023867314932	5.13029517971067	4.94960697392697	0.810144832611783	0.0249903339215439	0.148425395703022
Merged-chr15-51738796-4	chr15	51738690	51738890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	126671.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	6.02065298176079	5.93389156788881	6.40933197085009	5.95780017424459	5.64517571218625	5.57424419637988	5.71629292894142	5.86377728151058	-0.616157585557229	0.0195679037820509	0.126070222963668
Merged-chr7-99798442-2	chr7	99798342	99798542	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29975.0	NM_016720	50877.0	Mm.103703	NM_016720	ENSMUSG00000035239	Neu3	-	neuraminidase 3	protein-coding	2.54958594890234	2.82872109826845	2.62273270452207	2.72165923474785	2.92952374520575	2.92731790924775	2.81018777194079	2.87846270972726	0.914808305664675	0.147926988422097	0.429399090938234
Merged-chr4-10976816-1	chr4	10976716	10976916	+	553.0	f0_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	30803.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	3.38438720616882	3.36650814107389	3.49539182444061	3.56143303947236	3.24145571747473	3.37602642843786	3.48135683937022	3.59498180339276	-0.122861167782877	0.811451569526195	0.927055057819126
Merged-chr5-117938435-4	chr5	117938366	117938566	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 21 of 27)	intron (NM_008712, intron 21 of 27)	-38304.0	NM_145564	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	5.19543853904107	4.94973457823738	4.04225023927709	4.78649137333679	4.52171421212994	4.4506215675292	4.44239721877165	4.58836717764573	-0.653878859396095	0.126642923488451	0.395674769095591
Merged-chr5-140382854-4	chr5	140382746	140382946	+	914.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	6462.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	4.76229827683324	5.00961790291409	4.48374505153596	4.68458275011182	4.75069236710085	4.61504607262145	4.50717664414661	4.43568284931939	-0.341132231355889	0.350148774389603	0.657692033573757
Merged-chr18-66467446-1	chr18	66467346	66467546	+	801.0	f0_balb.idr	Intergenic	Lx6|LINE|L1	8842.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	4.02007391068714	4.18097677827695	4.06997191832606	4.17400235922077	4.25291682283433	4.09197531560983	3.84580986625849	4.36737745428485	0.102407278471362	0.807352274914233	0.925729780371477
Merged-chr2-142861189-4	chr2	142861081	142861281	+	958.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 3 of 26)	intron (NM_001355123, intron 3 of 26)	40283.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	5.28358203236558	4.40763108616234	5.33923110449405	5.51890047685772	5.06688511946378	4.63398513769183	5.1415551286754	4.92851300768032	-0.471131565073727	0.237608727391875	0.547779380627817
Merged-chr10-117883736-4	chr10	117883635	117883835	+	922.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-37761.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	4.83415569385075	4.55440609550392	4.33828216980047	4.33543418356103	4.45246267794805	4.26455876099868	4.27223910281727	4.83162825679938	-0.103263344231408	0.798194944404941	0.921955533143952
Merged-chr1-120519635-4	chr1	120519533	120519733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14609.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	5.78305215678079	6.42203624558807	6.48691788000223	5.0356966651225	7.22487700266631	7.39841206896689	6.77814724357665	6.51558465294745	1.3789458377983	0.00958093234082578	0.0765302640654964
Merged-chr19-47399177-4	chr19	47399076	47399276	+	957.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 2 of 14)	intron (NM_008018, intron 2 of 14)	65235.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	5.47181066238817	6.33943921939825	5.63613759339824	5.66606294642061	5.61483023102988	5.64964197498279	5.04265154488263	5.10251309663201	-0.741443187333533	0.0321089634441558	0.175146287760868
Merged-chr14-120306414-4	chr14	120306325	120306525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360376)	promoter-TSS (NM_001360376)	-27.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	6.86386596216814	7.06651879421461	6.82274237424323	7.36130248595581	7.05621996749331	6.86440128909799	7.10236641322443	6.74408141738519	-0.152406460497397	0.493245686773086	0.764080496611928
Merged-chr1-33684700-4	chr1	33684595	33684795	+	678.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14871.0	NR_033199	67503.0	Mm.87069	NM_026204	ENSMUSG00000103746	1700001G17Rik	-	RIKEN cDNA 1700001G17 gene	ncRNA	3.98803394426672	3.86460610815334	3.98865161306361	3.3462123186254	4.2499180254844	3.85669855286805	3.82673875124203	3.73363347463392	0.355972025154163	0.483222219131413	0.757703151862997
Merged-chr13-58126362-4	chr13	58126247	58126447	+	835.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029872, exon 1 of 1)	3' UTR (NM_029872, exon 1 of 1)	2209.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	3.82400763495469	3.68294564301803	3.6560683363495	4.04914763313705	3.96745624980385	4.18791791579072	3.95650697971569	3.92356392287136	0.495243764987308	0.278812720085064	0.591009603347969
Merged-chr18-75005754-4	chr18	75005634	75005834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001181)	promoter-TSS (NM_001001181)	-105.0	NM_001358306	407819.0	Mm.29866	NM_001001181	ENSMUSG00000036299	BC031181	-	cDNA sequence BC031181	protein-coding	8.05007541630153	8.2560548169038	8.09765566271703	8.25396947865681	8.28478488496765	8.2290247444379	8.37730415272757	8.21567727549956	0.134463892082724	0.388826690850507	0.689133612909246
Merged-chr11-75165525-4	chr11	75165419	75165619	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001098203, exon 2 of 2)	exon (NM_001098203, exon 2 of 2)	2633.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	5.0803263825391	5.41059430009204	5.28235405583958	5.46926916081053	5.74051211712896	5.06740419238768	5.256298195011	5.42491924020087	0.146318787463237	0.644284337012893	0.850147652600721
Merged-chr3-79628887-4	chr3	79628806	79629006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029482)	promoter-TSS (NM_029482)	-139.0	NM_025794	66841.0	Mm.28336	NM_025794	ENSMUSG00000027809	Etfdh	0610010I20Rik|AV001013	electron transferring flavoprotein, dehydrogenase	protein-coding	9.55707700430723	9.66726127081686	9.73645517815395	9.94997701656084	9.61888918308418	9.72850554542302	9.88142224661929	9.74790865427653	0.00827912004617375	0.956525066813088	0.984691114511791
Merged-chr11-83473070-4	chr11	83473013	83473213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027427)	promoter-TSS (NM_027427)	5.0	NM_027427	70439.0	Mm.181050	NM_027427	ENSMUSG00000020680	Taf15	2610111C21Rik|68kDa|TAFII68|Taf2n	TATA-box binding protein associated factor 15	protein-coding	7.61614923950255	7.95852846448201	7.30915089466652	7.59503992651669	7.55923932426725	7.50846253383826	7.4548037918004	7.57760298851984	-0.153575114456584	0.433151618764585	0.722823160126704
Merged-chr13-36074748-4	chr13	36074649	36074849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201358, intron 2 of 2)	MTD|LTR|ERVL-MaLR	42608.0	NM_201358	380840.0	Mm.390576	NM_201358	ENSMUSG00000046573	Lyrm4	BC034664|Gm903	LYR motif containing 4	protein-coding	6.37013775788381	6.64625852961938	6.27999003522092	6.69592643109992	6.25323815571258	6.25261047339183	5.87880932340509	6.1771648398934	-0.556085832489002	0.0209779415725176	0.132260794358767
Merged-chr10-67859089-2	chr10	67858989	67859189	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53573.0	NM_178679	216049.0	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	3.01108016764399	3.19668355507801	3.18438443784852	2.73545019203064	3.39581599640664	2.92003078309048	2.93842168602875	2.81114594662264	0.0132321074943073	0.98389804614272	0.994177974055515
Merged-chr6-97441648-4	chr6	97441534	97441734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	17652.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	8.28682091932564	8.16918585159255	8.02739008480354	8.07833585129684	7.85976249639055	7.82102366569463	7.78186665663665	7.96102097632554	-0.366863019614671	0.0235551040724015	0.142534681526727
Merged-chr10-81405682-4	chr10	81405573	81405773	+	988.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 7 of 8)	intron (NM_026756, intron 7 of 8)	-3902.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	5.19490989572461	4.95839939904061	5.10096577541657	5.04311160235962	5.12389309051663	4.94461949211072	5.46448437052791	4.95908909165798	0.133162021742135	0.674538048138876	0.866154895794861
Merged-chr10-62590367-4	chr10	62590255	62590455	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019553, intron 7 of 14)	intron (NM_019553, intron 7 of 14)	-11898.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	4.8677301091116	5.57095965673654	4.9089780342093	5.16972894626332	5.3488975879669	5.42987707641562	5.23046935300178	5.25289100263545	0.272026875919307	0.402525952522898	0.70000964511672
Merged-chr13-23684094-4	chr13	23684004	23684204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178189)	promoter-TSS (NM_178189)	-95.0	NM_001290380	68024.0	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	8.16410213569508	8.15712172143447	8.33528154733458	8.27420902503656	8.46239020425148	8.50203451143513	8.5206902149479	8.40935600191306	0.30147575992196	0.0432980892972202	0.21166741938762
Merged-chr15-77343586-3	chr15	77343487	77343687	+	903.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36534.0	NM_053104	93686.0	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	4.02286546685415	3.94488138121668	3.76832868423542	4.19038400842254	4.01283015342371	3.9960742775829	4.09460588276394	3.82114137848859	-0.0531347095427652	0.903961549481887	0.964475876224593
Merged-chr17-34364839-4	chr17	34364749	34364949	+	960.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_079835, intron 6 of 8)	intron (NM_079835, intron 6 of 8)	10027.0	NM_079835	547431.0	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	4.73351702099866	4.86173805549481	4.77503513995625	4.83105941137461	5.20310394614467	5.09982528648559	5.09880894391828	5.05813904480004	0.616521993312132	0.0456626891923435	0.219046769633746
Merged-chr7-83396399-3	chr7	83396311	83396511	+	750.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-188520.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	3.54344669529546	3.56528054894327	3.93667929975112	3.44581686541988	3.54664606143217	3.60044366515174	3.87694231947495	3.75409368552701	0.225783891671837	0.648054227290197	0.851973023337718
Merged-chr1-150015556-3	chr1	150015472	150015672	+	735.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-54282.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	3.34249820737348	3.5437379794685	3.21876750466878	2.89915291687715	3.53250845572221	3.67970327163178	3.38743038657921	3.45447949079111	0.877159340976509	0.119232864969012	0.38204933061581
Merged-chr10-94515040-5	chr10	94514954	94515154	+	941.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172051, exon 1 of 4)	exon (NM_172051, exon 1 of 4)	197.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.24561327360726	4.5415442627005	5.37667195954313	5.29549727828134	4.54481652024232	4.56189258159484	4.64236004541344	5.06631571960061	-0.870312464165316	0.0240105408376274	0.14455543739435
Merged-chr1-162739487-4	chr1	162739387	162739587	+	929.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081290, intron 1 of 34)	intron (NM_001081290, intron 1 of 34)	1069.0	NM_001081290	226562.0	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	5.02120673746953	5.6578568100744	4.82938942691595	4.74383728344283	5.40744683635189	5.45362327290416	5.16396467105879	4.90661354604975	0.256112545530621	0.493501674988319	0.764260818153987
Merged-chr10-21998909-6	chr10	21998820	21999020	+	798.972229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001161850, exon 12 of 12)	3' UTR (NM_001161850, exon 12 of 12)	4254.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	3.38547932595126	3.487227736701	3.32866619521715	3.00519750154561	3.49049265369621	3.50102109397555	3.31616868110692	3.38408155039424	0.437001413905506	0.419956936559419	0.713008002019985
Merged-chr9-55255869-4	chr9	55255758	55255958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	LTR37-int|LTR|ERV1	27767.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	6.261768655513	6.50976951249098	6.87961118044005	6.50960097483396	5.73340446581975	5.9778120670557	5.62801163889277	5.81971134082256	-1.18052469344962	3.56214725226431e-06	0.000109746123734939
Merged-chr14-47377145-4	chr14	47377019	47377219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145953, intron 1 of 5)	MIRc|SINE|MIR	3259.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	5.64683171191515	5.81202870338593	6.63815247826255	6.57261921050822	5.79789263477944	5.61155260312292	6.12697620702822	6.09485159203535	-0.516457571735106	0.11594273561624	0.376739729596271
Merged-chr17-66096920-4	chr17	66096834	66097034	+	891.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028388, intron 1 of 7)	intron (NM_028388, intron 1 of 7)	4625.0	NM_001278415	72900.0	Mm.2206	NM_028388	ENSMUSG00000024099	Ndufv2	2900010C23Rik	NADH dehydrogenase (ubiquinone) flavoprotein 2	protein-coding	3.91462032080955	3.75942439384362	3.71224986252471	3.74197000621413	3.86566565421654	3.71471416041424	3.8019882815972	4.04601366982365	0.242039690857362	0.587386443728873	0.819154464745539
Merged-chr5-122547534-4	chr5	122547400	122547600	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45275.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	4.9505893731105	4.66474199365187	5.0131666900969	4.84642638625271	4.34392775301847	4.58704236031391	4.1247995920648	4.97920592975423	-0.700671624635544	0.078179875842079	0.302449338690328
Merged-chr8-82863873-4	chr8	82863763	82863963	+	998.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177378, exon 1 of 7)	5' UTR (NM_177378, exon 1 of 7)	507.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	4.28886303045006	4.35978305974861	4.66636492969608	4.16792935988292	3.86502516728966	4.37287882573267	4.27012131728758	4.04661830569454	-0.571565290739738	0.182315229497627	0.47878218634963
Merged-chr16-4560765-4	chr16	4560658	4560858	+	960.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1038.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	4.66980933002835	4.62968594690524	4.27261328359298	4.52790624268726	4.80163333954115	4.84193937679091	4.61035155815778	4.62892132149883	0.414900041657234	0.240762405391216	0.551329427813959
Merged-chr9-65215139-4	chr9	65215024	65215224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177460, intron 1 of 6)	intron (NM_177460, intron 1 of 6)	434.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	6.4432406828073	6.15349771743703	6.59538651427908	6.32406653937464	6.12229371501588	5.90885446973158	6.04219336650261	5.95622268202938	-0.558412871651938	0.0193534942458012	0.125164670808821
Merged-chr2-66120190-4	chr2	66120095	66120295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015736, intron 1 of 10)	intron (NM_015736, intron 1 of 10)	4598.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	5.56699836030493	5.82651122412285	5.92937364049589	5.97531027174474	5.8284645341543	6.08194028714369	6.2809431095356	5.94739932487707	0.307564879958544	0.238822505221826	0.549192230129046
Merged-chr9-66916605-4	chr9	66916492	66916692	+	820.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	AmnSINE1|SINE|Deu	3113.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	3.65307499161005	3.74616493071236	3.18237071677932	3.25574158845368	3.84996070614519	3.61257374483186	3.3670588470831	3.43705578955648	0.348590076123698	0.528980401072286	0.785359737535491
Merged-chr4-43728743-3	chr4	43728662	43728862	+	858.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027511)	TTS (NM_027511)	-1272.0	NM_001348108	71406.0	Mm.33063	NM_027789	ENSMUSG00000028475	Spaar	5430416O09Rik|AI481365|Spar	small regulatory polypeptide of amino acid response	protein-coding	3.14460068544317	3.63561093299958	3.02609560020959	3.24614277414452	2.72863270225835	2.85916996506082	2.74393180491498	2.96093479552982	-2.08233679363905	0.00212058246059318	0.0244676509908514
Merged-chr19-36926857-3	chr19	36926770	36926970	+	877.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080706, intron 1 of 37)	intron (NM_001080706, intron 1 of 37)	791.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	3.35701854731992	3.07061828073641	3.09492304988661	3.27982462843845	3.57347043210967	3.34799339580952	4.08242547475295	3.41394055564796	1.42844496644787	0.0117339072351158	0.088466029349466
Merged-chr10-78476972-4	chr10	78476890	78477090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12042.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	6.53384955454299	6.41373677652025	6.53500238158561	6.81568549697696	6.65174579310241	6.55536177589228	6.4852593959594	6.4282587897823	-0.0885547143737134	0.688792599922086	0.872980495973815
Merged-chr16-25038710-4	chr16	25038617	25038817	+	894.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20922.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	4.62394725429965	4.31602213592545	4.27713291682208	4.93782007287299	4.46151561773781	4.50261435618869	4.60297179892082	4.62166050720295	-0.0955792002135105	0.810528674759866	0.926833751678515
Merged-chr19-46511436-4	chr19	46511336	46511536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	9788.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	8.38589634691724	8.40671548892655	8.36624614360768	8.20582707392721	8.29332683757816	8.25969718069065	8.37892774855539	8.08331981672418	-0.100867656899938	0.525112081704472	0.783229855070132
Merged-chr14-56778449-4	chr14	56778412	56778612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360420)	promoter-TSS (NM_001360420)	-194.0	NM_025682	66645.0	Mm.20129	NM_025682	ENSMUSG00000021938	Pspc1	5730470C09Rik|AI327109|AI449052|PSP1	paraspeckle protein 1	protein-coding	7.15641316660533	7.33963512787614	7.59445929991217	7.2081191981931	6.89895136427968	7.17449373734228	7.23244465750006	7.45085889181154	-0.181080512823863	0.39168607689602	0.691351450352092
Merged-chr1-132296741-4	chr1	132296629	132296829	+	782.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-1897.0	NM_144810	213417.0	Mm.39723	NM_144810	ENSMUSG00000042115	Klhdc8a	A630065K24Rik	kelch domain containing 8A	protein-coding	3.67042058665943	4.22409352251151	3.82832412084716	2.79042238759012	3.97589083580999	3.61484136523732	4.07495045697384	3.28699456568123	0.0112378689414618	0.990799499573612	0.996425161706009
Merged-chr14-105232635-4	chr14	105232540	105232740	+	920.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26033.0	NM_029561	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	3.87011062296724	3.9916275305644	4.11907446311005	4.07483069857145	4.19206386715533	4.37422158402551	3.90842896745414	3.92205084809026	0.245364303802378	0.567342882400551	0.808229609203301
Merged-chr2-26974159-4	chr2	26974060	26974260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001322, intron 2 of 28)	intron (NM_001001322, intron 2 of 28)	744.0	NM_001290465	279028.0	Mm.330084	NM_001001322	ENSMUSG00000014852	Adamts13	ADAM-TS13|ADAMTS-13|Gm710|vWF-CP	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13	protein-coding	7.7171550171224	8.21350113401138	7.74358902174658	7.81229124258052	8.22837617659189	8.01699453838861	8.06318298486256	8.09636385332674	0.280001537082445	0.127000053492269	0.396432371413895
Merged-chr8-19980011-4	chr8	19979908	19980108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270553, intron 6 of 9)	CpG	250432.0	NM_001039553	626415.0	Mm.425517	NM_001039553	ENSMUSG00000096265	4930467E23Rik	TSAP	RIKEN cDNA 4930467E23 gene	protein-coding	7.45967445142285	6.87866738521916	7.35858176941906	7.35877908835937	6.29805848581198	5.94358329451743	6.10098693962992	6.24023115447858	-1.60403779787606	9.83799957570702e-12	8.88653517511738e-10
Merged-chr5-118354320-4	chr5	118354222	118354422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109095.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	6.55114654616042	6.76715028402967	6.53660468936229	6.50955755110378	6.38282490524879	6.3502911749194	6.05438057903691	6.14701425836507	-0.512705755714987	0.022932147185029	0.140098472618932
Merged-chr10-78095319-4	chr10	78095215	78095415	+	895.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25947.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	4.30224551580723	3.87054839973943	4.12215441157595	4.21334600949447	4.23681212614762	4.3870971123891	4.36402665616128	4.16725912739552	0.370425848915296	0.359576138732271	0.665436252718149
Merged-chr5-77172682-3	chr5	77172583	77172783	+	898.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38522.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	3.37561427918787	3.20284650973314	3.23608295966499	3.0622397984975	4.12885002322074	3.79855012231095	3.80865061467502	4.26265798678743	2.6081482012972	2.08697846790558e-07	8.37840047191489e-06
Merged-chr11-105369059-4	chr11	105368941	105369141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172568, intron 10 of 11)	intron (NM_172568, intron 10 of 11)	76395.0	NM_008626	17534.0	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	5.12570648203728	5.75442487192748	5.44669912261625	5.22619531841107	5.2666300134143	5.34110586663145	5.84425517330337	5.52503922954138	0.178796029672463	0.574493150743809	0.812442342382452
Merged-chr7-112252358-1	chr7	112252258	112252458	+	776.666687	f0_balb.idr	intron (NM_001193305, intron 2 of 25)	intron (NM_001193305, intron 2 of 25)	26522.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	3.0482779494529	3.2404152500405	3.25848698337632	3.32793346125972	2.49905524322132	2.75993106406614	2.56853513967635	2.65161886847434	-3.61392881559547	3.39900581407711e-05	0.000806997447765826
Merged-chr6-88855822-2	chr6	88855722	88855922	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347327, intron 2 of 7)	intron (NM_001347327, intron 2 of 7)	12968.0	NR_045880	100038356.0	Mm.442704	NR_045880	ENSMUSG00000085828	Gm15612	-	predicted gene 15612	ncRNA	2.91589749978997	3.04683430281049	2.98186342125842	2.88620827646806	3.35356164666154	3.15417359368251	3.14867007123519	3.04290281036224	0.934463873389489	0.0985135060543302	0.343994301133918
Merged-chr14-26638031-4	chr14	26637929	26638129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007479)	promoter-TSS (NM_007479)	-105.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	9.38948204973348	9.4674829367374	9.59967268482247	9.35642998160455	9.41735708558111	9.5242185089435	9.4040807454989	9.39070611719911	-0.0244276665818233	0.859825698039603	0.94704031568397
Merged-chr13-113340806-1	chr13	113340706	113340906	+	573.0	f0_balb.idr	Intergenic	Intergenic	131147.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	3.36957450708245	3.38704321426874	3.37002370590862	3.36293361910118	3.44720648447204	3.36622779116524	3.30157086263597	3.12753082936034	-0.180498901170494	0.730768620565433	0.893274594594315
Merged-chr1-133012504-1	chr1	133012404	133012604	+	925.5	f0_balb.idr	intron (NM_008575, intron 4 of 11)	intron (NM_008575, intron 4 of 11)	12912.0	NR_126506	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	3.86960201336812	4.12059179885127	3.50044334831472	3.78524620025066	3.24458633515981	3.73594706530542	3.65699422235211	3.55821232062392	-0.881163639301095	0.0932280709988193	0.333999476247635
Merged-chr2-167335299-4	chr2	167335207	167335407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	13871.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	7.36205065311145	7.44057825643966	7.79987901039328	7.6905138052347	7.21966118436769	7.06166004007502	7.32669495807382	7.74298941627185	-0.300307167622594	0.167863404745399	0.459799479965088
Merged-chr11-97632151-4	chr11	97632056	97632256	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2440.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	5.91232134796977	5.75954712342747	5.29180954432268	5.27617763562463	5.58788396688808	5.49913912685757	5.49948374366341	5.15456502473541	-0.228589062539518	0.470596700946189	0.749280898705935
Merged-chr4-122892351-4	chr4	122892220	122892420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6244.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	6.36675483226793	6.14461192459968	6.36788270412599	5.95333231105088	6.31223175441615	6.19080896123437	6.41774812929556	5.93940300755533	0.0422832082359628	0.86566552706223	0.949726204279319
Merged-chr1-39493831-4	chr1	39493729	39493929	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-15074.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	5.16832805876814	5.23119513733083	4.89761432895149	5.3826675315182	5.20277742722099	4.58635786388541	4.58157558277969	5.3096521260953	-0.412427895772157	0.266682361737153	0.578349328771572
Merged-chr17-47743208-2	chr17	47743101	47743301	+	955.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	B3|SINE|B2	5270.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	2.66471220666912	2.65744348454663	2.7351271436802	2.74463441287669	2.91297887047771	2.909851518175	3.22303571232279	2.86382971901571	1.25110792615414	0.044329316809304	0.21472794113475
Merged-chr1-172331775-4	chr1	172331669	172331869	+	924.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2447.0	NM_001360808	16524.0	Mm.261168	NM_008429	ENSMUSG00000038026	Kcnj9	1700085N21Rik|Girk3|Kir3.3|mbGIRK3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding	4.87385876467764	4.96530271262503	5.27718431536753	5.35241777621011	4.567401778213	4.29292472530245	4.50062894041979	4.51715470815785	-1.43896159316603	8.58587269378493e-05	0.00178850989894913
Merged-chr19-41088481-4	chr19	41088389	41088589	+	948.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011904, intron 19 of 20)	intron (NM_011904, intron 19 of 20)	-11376.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	4.58328190124758	4.19881605624423	4.5453268125054	4.52375759807003	4.54637667955253	4.55138735129053	4.21790192186464	4.61850695273824	0.0501292896730984	0.894858035227234	0.96069135232764
Merged-chr13-91093363-3	chr13	91093268	91093468	+	753.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 3 of 7)	intron (NM_025770, intron 3 of 7)	130619.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	4.30229859787894	3.54369195795746	3.98162562759312	3.79200700907071	3.75028476825345	3.60401794425979	3.9177484496161	3.88424356332577	-0.375393284151191	0.446554437635912	0.732194566273216
Merged-chr19-59024791-4	chr19	59024692	59024892	+	695.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 8 of 16)	ID_B1|SINE|B4	51277.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	3.6623496623069	3.48163798977036	3.60921592623717	3.93414349555113	3.86339478437408	3.72550532187249	3.48247456850113	3.60727632227817	-0.0410862046907131	0.934672735762259	0.97635719558922
Merged-chr11-51818433-4	chr11	51818309	51818509	+	898.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 12 of 12)	intron (NM_001357588, intron 12 of 12)	39072.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	4.46457705984188	4.38665021574608	4.6588157205171	4.77729457889008	4.29022979484511	4.36460559301891	4.31440474346159	4.54333486549915	-0.494411557060607	0.191826919466457	0.491258843660609
Merged-chr7-6359364-3	chr7	6359264	6359464	+	946.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3944.0	NM_001025163	330463.0	Mm.136456	NM_177888	ENSMUSG00000055150	Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding	3.547847833273	3.53213306629523	3.42128431430287	3.78700461269211	4.21520171603171	4.03837386672541	3.65000442201046	3.81890973930616	1.04231388786999	0.0376936430018275	0.194110535033069
Merged-chr10-43424684-3	chr10	43424587	43424787	+	982.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168289, intron 7 of 7)	intron (NM_001168289, intron 7 of 7)	-54453.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	3.77675917916543	4.14164126346675	4.60338500740746	4.38865605040766	3.95220564024909	3.64305206713298	3.87247735094353	3.65438082200839	-1.27562884912297	0.00980928409349635	0.077812886714697
Merged-chr17-47883305-3	chr17	47883216	47883416	+	962.4111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028767, intron 3 of 16)	intron (NM_028767, intron 3 of 16)	41316.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	4.31356278492119	4.8840905074705	4.6986404885193	4.56456473381261	3.14688090060803	3.47132098798201	3.41228732754815	3.56859527526322	-4.37455622678289	1.68860093130291e-10	1.24503643363303e-08
Merged-chr11-115824040-4	chr11	115823963	115824163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145438)	promoter-TSS (NM_145438)	5.0	NM_001252532	217325.0	Mm.290450	NM_145438	ENSMUSG00000020782	Llgl2	9130006H11Rik|Llglh2	LLGL2 scribble cell polarity complex component	protein-coding	6.43506565714185	6.14527065376224	5.85595373815847	6.13462455761035	6.10110197692551	5.85039718783357	5.89743371415543	5.92339147964803	-0.316392125431162	0.210500707121655	0.514976722960957
Merged-chr18-32359308-7	chr18	32359191	32359391	+	998.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045403, exon 3 of 3)	non-coding (NR_045403, exon 3 of 3)	-17926.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	5.33939536788148	5.27869632491342	5.10070041710163	5.00080246992199	4.80610745268434	5.24183022777053	4.65400185103474	5.3635002382832	-0.261502174867872	0.448200262959618	0.733484953227545
Merged-chr5-74471967-4	chr5	74471865	74472065	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 3 of 8)	intron (NM_001114660, intron 3 of 8)	59777.0	NM_178672	212986.0	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	4.85747683176896	4.57601192246789	4.89449166748573	4.91034833049204	5.2518841206336	4.99505319902634	4.83518306939759	4.85504674978112	0.369289276404337	0.272497577758963	0.58392103703842
Merged-chr14-79549635-4	chr14	79549537	79549737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	intron (NM_007920, intron 2 of 8)	33963.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	6.47233351575561	6.31066405204372	6.05972742684029	6.41793974506588	6.51988179811817	6.23692721616856	6.02884408947599	6.16199212899443	-0.103561170543856	0.671883889776725	0.864972533221387
Merged-chr3-116595367-1	chr3	116595267	116595467	+	1000.0	f1_balb.idr	promoter-TSS (NR_152258)	promoter-TSS (NR_152258)	409.0	NM_001289571	72776.0	Mm.440836	NM_028349	ENSMUSG00000027959	Sass6	2810453L12Rik	SAS-6 centriolar assembly protein	protein-coding	4.36813879734059	3.9779557759182	4.28337119487975	3.88852908285121	4.46199409820953	4.76253509021661	4.17334424862278	4.03893865111587	0.623508026858717	0.155392496856637	0.440985819425086
Merged-chr11-69095113-4	chr11	69094989	69095189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3860.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	9.14937401479614	9.17582810553303	9.17272772014326	8.87622284613972	9.07830947783216	9.30986678562249	8.94157829799505	8.95025871995523	-0.0215650585463963	0.894307526786787	0.960481560907683
Merged-chr7-31007942-3	chr7	31007834	31008034	+	875.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26013.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	4.03213233135512	3.59068484574681	3.93527596439562	4.07900188262187	4.1340665667824	3.8349964696888	4.14722183373323	4.20503443004731	0.425286039986595	0.345009624441404	0.653357561969643
Merged-chr19-26748331-4	chr19	26748224	26748424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026003)	promoter-TSS (NM_026003)	-79.0	NM_026003	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	7.80603851754141	7.5562520129388	7.36076639319879	7.87513224302426	7.29590585527284	7.51745335653324	7.36465385756759	7.10528670956442	-0.460657748840077	0.0225673767769291	0.138775369318666
Merged-chr15-78983553-4	chr15	78983459	78983659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024716, intron 1 of 13)	intron (NM_001024716, intron 1 of 13)	503.0	NM_001024716	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	4.79509565427017	4.76637814506764	4.68405254934706	4.77856994210976	4.76258386781857	4.5565904794615	4.62312749469431	4.75654918286777	-0.159778308180976	0.634726613532086	0.845355991778317
Merged-chr7-101384664-4	chr7	101384560	101384760	+	987.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027180)	promoter-TSS (NM_027180)	-866.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	5.19358698682908	5.32838088822258	5.16271979613088	4.74845060460359	5.14977123889382	5.13148309186237	4.89194511074334	5.65634902229902	0.23106396220869	0.50853174222246	0.773535236506654
Merged-chr8-116268078-3	chr8	116267968	116268168	+	976.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-236947.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	4.0190896438239	4.33376576471557	3.5446948174916	3.385578369552	4.49519947003211	4.42039895698781	4.22874957380869	3.9662374732029	1.0666678239986	0.0399744828027518	0.201715537432574
Merged-chr12-102252734-4	chr12	102252634	102252834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172152, intron 12 of 16)	intron (NM_172152, intron 12 of 16)	-30340.0	NM_177620	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	5.71471539281166	5.89909330977175	5.38426918200916	5.7325019121973	5.77700316006019	5.62243019305484	5.61214793570054	5.34866883633725	-0.158317421818121	0.572555215736669	0.811251013052168
Merged-chr1-180942402-4	chr1	180942276	180942476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144794)	promoter-TSS (NM_144794)	-142.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	5.95897384945552	5.88838788577527	5.84480006653687	6.04309234236468	5.90163170341066	5.92125957523261	6.18604331530042	5.8645350321013	0.0439368105643457	0.857440939086014	0.946298254907789
Merged-chr13-67399772-4	chr13	67399668	67399868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080941)	promoter-TSS (NM_001080941)	-1.0	NM_001080941	72807.0	Mm.303790	NM_001080941	ENSMUSG00000078994	Zfp429	2810487A22Rik|AI929863|Rsl2	zinc finger protein 429	protein-coding	7.16877709075098	7.2295288655128	6.75415748871233	6.97737317176813	7.53601028635687	7.55653853152583	7.38108860944119	7.1419423965406	0.50410134767704	0.0141693660483508	0.100776453016655
Merged-chr4-127168507-3	chr4	127168417	127168617	+	858.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198618)	promoter-TSS (NM_198618)	-687.0	NM_198618	242667.0	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	DLG associated protein 3	protein-coding	3.65025134853239	3.75691871761032	3.92894794009953	3.28977581036528	3.36287636473428	3.54190316919643	3.35054031207909	3.74815289405459	-0.515921278292413	0.338688764011774	0.648111538678755
Merged-chr7-4943421-4	chr7	4943297	4943497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173008, intron 13 of 13)	intron (NM_173008, intron 13 of 13)	17553.0	NM_173008	269855.0	Mm.44190	NM_173008	ENSMUSG00000035279	Ssc5d	A430110N23Rik|S5D-SRCRB	scavenger receptor cysteine rich family, 5 domains	protein-coding	6.47785855164079	6.69995147007235	6.02724279248742	6.41504020197059	6.72734785342041	7.05103290005363	6.69470441857231	6.60551532650127	0.500070199068664	0.0364970848071787	0.190080193128717
Merged-chr11-32221802-11	chr11	32221617	32221817	+	934.7727050000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010117, intron 1 of 17)	CpG	576.0	NM_010117	13650.0	Mm.11545	NM_010117	ENSMUSG00000020282	Rhbdf1	C16ORF8|Dist|Dist1|Egfr-rs|mKIAA4242	rhomboid 5 homolog 1	protein-coding	3.7207637697563	4.20771627870621	4.08667370677173	3.75256149264608	4.02810222523324	4.16461347822959	3.87462891311636	4.21357554740254	0.329744645591473	0.461274194741897	0.743081043510999
Merged-chr9-83400930-3	chr9	83400810	83401010	+	776.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029434, intron 4 of 7)	GA-rich|Low_complexity|Low_complexity	-30637.0	NR_102437	100039186.0	Mm.212721	NR_102437	ENSMUSG00000099718	Gm2087	-	predicted gene 2087	ncRNA	4.20450257380843	3.90819991650412	4.20518041674189	4.33094000683529	3.58100392900959	3.56189059925751	4.18557754627955	3.92813032893577	-0.92548490324631	0.0558669032552699	0.247408000053491
Merged-chr10-40435569-4	chr10	40435462	40435662	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198164, intron 3 of 11)	intron (NM_198164, intron 3 of 11)	86254.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	5.09629588949329	5.61497468240126	4.76819446183264	5.1218961191527	5.10708092002328	5.17123632572202	4.52220133301293	4.80599753305368	-0.49567248695719	0.187940055784746	0.486397310500761
Merged-chr8-121580627-4	chr8	121580538	121580738	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1832.0	NM_133765	76454.0	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	5.35297379104024	4.94641909095776	4.70904541939861	5.26198423255927	5.2011363903206	5.12499004844735	4.81235339860807	5.17968591366105	-0.018042602953706	0.957569667272634	0.984854875183129
Merged-chr2-163787893-4	chr2	163787797	163787997	+	862.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32937.0	NM_016873	22403.0	Mm.13828	NM_016873	ENSMUSG00000027656	Wisp2	Ccn5|Crgr4|Ctgfl|Rcop1	WNT1 inducible signaling pathway protein 2	protein-coding	3.73398332988962	4.12730215487197	3.73446620430894	3.98996167572621	4.00759635759782	3.96397943149643	3.87914955711881	4.03555319018485	0.156221196113826	0.723865940236199	0.889818557613851
Merged-chr15-59743073-4	chr15	59742963	59743163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51896.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	6.0088600703054	6.94076729995913	6.32039712188948	6.50188328405671	6.74020674587712	6.85439375710023	6.67339615713511	6.83991391509697	0.40473379918134	0.112269768671031	0.370388458528943
Merged-chr13-67269123-4	chr13	67269040	67269240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155551)	promoter-TSS (NR_155551)	-72.0	NM_001001152	238690.0	Mm.306358	NM_001001152	ENSMUSG00000055480	Zfp458	BC062958|Gm33446|Rslcan-7|Znf728|mszf59-2	zinc finger protein 458	protein-coding	6.78815596841798	6.69577819601793	6.60361870261996	6.72465384712536	7.16599925287646	7.03581148326789	6.98934054020283	6.98358189568454	0.482134613928528	0.0120393046455788	0.0901384691749506
Merged-chr5-21295849-4	chr5	21295741	21295941	+	921.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 17 of 18)	intron (NM_029195, intron 17 of 18)	-76832.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	4.67951498564132	4.97086371221382	5.02297854221522	4.81644637567651	4.40571206740197	4.85407181763368	4.65832481442885	4.26485638106462	-0.682726005758746	0.0640135060128614	0.268748226610458
Merged-chr8-69081631-4	chr8	69081535	69081735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153054, intron 1 of 16)	intron (NM_153054, intron 1 of 16)	-7101.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	5.32701367784139	5.8450173484593	5.64246838892712	5.6262832117502	5.5334603599208	5.8160657821574	5.53610998222842	5.32425877702094	-0.112543228107109	0.693157648660148	0.875242026467167
Merged-chr13-12565776-4	chr13	12565674	12565874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026184)	promoter-TSS (NM_026184)	-109.0	NM_026184	67475.0	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding	9.08158408892077	9.33542384788534	9.23618763393417	9.32396506458079	9.17419943084747	9.12796066134719	9.29672449778055	9.06033233906602	-0.102355076295368	0.481936146111754	0.756902916640137
Merged-chr17-84361154-4	chr17	84361054	84361254	+	982.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	105054.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	5.16543561383902	4.61551619833861	4.82547348272797	4.86583611834549	5.26707272767443	5.24552531314668	5.11059047753593	4.74186394427892	0.45488693630532	0.181332379441324	0.477897565027178
Merged-chr13-63253365-4	chr13	63253255	63253455	+	974.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	13326.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	4.85137467142098	4.92558019658951	4.96368531350384	5.49163859061669	5.15261905572698	5.06579551382654	5.10504272336807	4.68386477479907	-0.17223401880521	0.630874701462497	0.843094226067586
Merged-chr5-76140479-5	chr5	76140367	76140567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020611, exon 1 of 6)	exon (NM_020611, exon 1 of 6)	194.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	7.84145280451682	8.12373904644229	8.44552690243656	7.92473578544613	7.94056292568024	8.24477318444106	7.71082442170891	8.01630390778698	-0.144922672266916	0.478442731803722	0.754532850325209
Merged-chr5-138280981-2	chr5	138280881	138281081	+	899.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016964, intron 1 of 33)	intron (NM_016964, intron 1 of 33)	472.0	NM_016964	50878.0	Mm.285609	NM_016964	ENSMUSG00000036928	Stag3	SA-2	stromal antigen 3	protein-coding	2.31202283162393	2.22688387729701	2.37494076350996	1.89938987453982	2.00978406867577	2.1305698288327	2.02267240375043	2.37350798520838	-0.468340329220026	0.582245454805003	0.816501953640427
Merged-chr19-46522073-4	chr19	46521971	46522171	+	949.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	20423.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	4.83144056695023	4.21188395258389	4.52506911531183	4.51350712772697	4.76733835098423	4.61309351640004	4.77445544367234	4.98856784942384	0.555993779204825	0.128690320234379	0.399162483129236
Merged-chr6-31563987-3	chr6	31563886	31564086	+	819.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013723)	promoter-TSS (NM_013723)	-49.0	NM_013723	27205.0	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1|Podxl1	podocalyxin-like	protein-coding	4.12197072613011	3.83061807434385	3.89909405362569	3.81825766637707	3.67547559177342	3.8630440707959	3.72876380628888	3.99084722296449	-0.289421290983724	0.522115846675587	0.781833715877511
Merged-chr3-27193518-3	chr3	27193367	27193567	+	976.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	10463.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	3.43543150877846	3.87229138703016	3.4358602816051	3.36245157518997	3.59040870963134	3.92815619285748	3.36163919243189	3.75760755774197	0.414483044897753	0.429897070189983	0.720635978674715
Merged-chr8-123443076-4	chr8	123442961	123443161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281803)	promoter-TSS (NM_001281803)	105.0	NM_054046	23854.0	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	6.34056242949364	6.00627213398851	6.65567070836318	6.05793189598722	5.69768854126231	6.07513750713034	5.60104186471228	6.28504568752523	-0.5331828380485	0.067971085495267	0.278300898868955
Merged-chr2-158189610-4	chr2	158189535	158189735	+	880.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001131021, intron 14 of 15)	ORR1D2|LTR|ERVL-MaLR	-2373.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	4.11572235065235	4.57838874099402	4.16587030298696	4.0105111091911	4.31994667088171	4.13614051084669	4.32722584472244	4.57492127793096	0.287822067584746	0.490352166053009	0.76218992069439
Merged-chr7-90476085-4	chr7	90475989	90476189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026734)	promoter-TSS (NM_026734)	-94.0	NM_026734	68472.0	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	8.79314287507255	8.82240722084445	8.89612309915995	9.01538648219686	8.92326167729047	8.81632116833055	8.94305413698804	8.49677277063934	-0.0980955856213077	0.55063530159486	0.798673593705145
Merged-chr11-34002400-4	chr11	34002292	34002492	+	775.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-9199.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	4.04441002829406	4.45493833026766	3.99339373799286	3.89046572522924	4.46735299411465	4.21981595600389	4.25654819512634	3.99112203217443	0.359604961503301	0.409047069466641	0.704791463679563
Merged-chr2-11192947-4	chr2	11192837	11193037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	20555.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	5.4383622187534	5.38171617994424	5.22465595333403	5.3931385371579	5.76547770482193	5.58475825754094	5.29483099836328	5.31742705485336	0.266917817758693	0.357080902450548	0.663325163389815
Merged-chr8-47917867-4	chr8	47917770	47917970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 2 of 22)	intron (NM_133791, intron 2 of 22)	72681.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	5.34990799035972	5.24496157397887	5.90677481669276	6.04104140057223	5.53874360498243	5.39690886700556	5.3857913931626	5.6301181780273	-0.345152729297718	0.28207053902067	0.594254538219845
Merged-chr18-49755622-4	chr18	49755507	49755707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170960)	promoter-TSS (NM_001170960)	-6.0	NM_026854	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	9.0086573129047	9.19087304310936	9.21967836047264	9.27098637478121	9.34468103322872	9.26177161815277	9.37957714540111	9.28256732425366	0.17166554083678	0.221245946517728	0.529364524091074
Merged-chr4-12546679-3	chr4	12546587	12546787	+	936.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F-int|LTR|ERVL-MaLR	-360150.0	NM_173746	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	4.04074288742188	4.08854227708831	4.04137539826219	4.00558371901145	3.47672585204577	3.80868379336082	3.9329668697299	3.56667029233052	-1.00309412841622	0.0320791574684856	0.175010527282083
Merged-chr8-90840255-4	chr8	90840143	90840343	+	988.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 1 of 39)	MamRep605|LTR?|LTR?	11408.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	4.89626734998488	4.82900428563269	4.93140094253525	5.06478477525407	4.51548959864901	4.7168263738113	5.06487230957298	4.6661447316828	-0.392879851713805	0.256546079958974	0.568162252716061
Merged-chr14-17916695-3	chr14	17916604	17916804	+	915.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-64940.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	3.73588209321511	3.59748144490091	3.73640352788535	4.2973533861595	3.49126692635762	4.00844758817075	3.66775193075247	3.68012676685434	-0.488496557594388	0.350664505451784	0.658186562602986
Merged-chr3-81123651-4	chr3	81123557	81123757	+	903.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	87241.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	4.6962042161517	4.61417192869171	4.69698143025633	4.92225900224967	4.34705055798884	4.24312048948252	4.25679758934983	4.54143063608922	-0.895761392472396	0.0160484286342324	0.109879867425551
Merged-chr14-66242472-1	chr14	66242372	66242572	+	781.0	f0_balb.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-28648.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	4.08428870068424	3.94921051714968	3.50154730750337	3.59408927744713	4.23795279874544	4.02420841281101	3.61519233889343	3.94751501674617	0.508219984091674	0.306176262889995	0.618638025596462
Merged-chr2-180745434-4	chr2	180745356	180745556	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20117.0	NM_183161	228993.0	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	5.99016042075837	5.90498397701435	5.6888272930371	5.6544722360217	6.11002666993918	6.01212085606861	5.7603830105535	5.39117866231216	0.0751165538291196	0.792233076038759	0.91954542417963
Merged-chr15-76343499-4	chr15	76343365	76343565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025567)	promoter-TSS (NM_025567)	-58.0	NM_025567	66445.0	Mm.29196	NM_025567	ENSMUSG00000022551	Cyc1	2610002H19Rik|AA408921|Cyct1	cytochrome c-1	protein-coding	6.52233541452959	6.21359945983684	6.17316357147541	6.04971097227247	6.46626601241064	6.22316489707962	6.54941252592863	5.71264102391122	0.0603265331237114	0.826650162192735	0.933495764252694
Merged-chr6-113750282-4	chr6	113750246	113750446	+	964.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 19 of 19)	intron (NM_001036684, intron 19 of 19)	-9665.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	4.13259482885132	4.10161835156633	4.32036037833916	4.25829371365379	4.33450620434597	4.25918090253571	4.34331061239045	4.69105950739921	0.496146602118298	0.204714631828165	0.508129404704835
Merged-chr13-54209635-4	chr13	54209564	54209764	+	942.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153432, intron 1 of 3)	intron (NR_153432, intron 1 of 3)	17531.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	4.77881014395589	4.4040293830798	4.36097264447049	4.18991021696906	4.58864298691206	4.18473009833369	4.38539724541231	4.67540999432896	0.0891697819443678	0.825001814970636	0.932930565831813
Merged-chr7-145122694-4	chr7	145122626	145122826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85393.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	5.44150070795143	4.96250268872974	5.99639174617767	6.23989187273302	5.04324308055175	4.41030918443468	4.58722626763327	4.79270833079659	-1.87872654140746	8.97607422664553e-06	0.000250061834590373
Merged-chr2-61713392-2	chr2	61713292	61713492	+	872.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_021526, intron 1 of 11)	PB1D7|SINE|Alu	1698.0	NM_021526	59029.0	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	2.91433955935988	3.00992384492561	3.16968381819159	3.19950902986078	3.25907482568475	3.28049980823546	3.09947132065052	3.27872445174619	0.555471233973677	0.324367336672523	0.636001946366963
Merged-chr13-31225667-3	chr13	31225564	31225764	+	946.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045957, intron 1 of 2)	L1MA5A|LINE|L1	15422.0	NR_045957	73924.0	Mm.417825	NR_045957	ENSMUSG00000087460	4930401O12Rik	-	RIKEN cDNA 4930401O12 gene	ncRNA	3.67873117552808	3.89289400146763	3.57925742924245	4.03664161010991	3.02378966008392	3.11541669347601	3.27800480810901	3.22149057347627	-2.51074163094922	2.69880650352436e-05	0.000663094056314671
Merged-chr1-151598043-4	chr1	151597933	151598133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	L3|LINE|CR1	26660.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	7.89691729332186	7.91100089919436	7.71096339886904	7.5933632740998	7.58016580856886	7.9280177984291	7.51912495035505	7.30989377628779	-0.234101125032457	0.239760764004254	0.550267823751707
Merged-chr7-88250579-4	chr7	88250483	88250683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-27502.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.51986365142936	6.77655083295608	7.14110254636531	6.39382363193797	6.88276372526276	6.62766273132778	6.91074776266652	6.92854832761471	0.165820595153605	0.492276406112253	0.763376447368555
Merged-chr13-5705169-4	chr13	5705066	5705266	+	633.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	152926.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	3.79499753057395	3.41217654344744	3.34790549251546	3.60436461901872	4.0915003734136	3.65081048714099	3.73137188514316	3.53224569726973	0.685401561007996	0.180854908405107	0.477239941744286
Merged-chr11-97740374-4	chr11	97740301	97740501	+	892.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054051, intron 1 of 9)	intron (NM_054051, intron 1 of 9)	4303.0	NM_054051	108083.0	Mm.39700	NM_054051	ENSMUSG00000018547	Pip4k2b	AI848124|PI5P4Kbeta|Pip5k2b|c11	phosphatidylinositol-5-phosphate 4-kinase, type II, beta	protein-coding	4.23397213785703	5.34440355039778	4.59266273584573	4.00928291797596	4.40620278623897	4.72787822310056	4.26606528458831	4.28236894265988	-0.485528632602659	0.321654574021746	0.633233286881578
Merged-chr9-61386025-4	chr9	61385962	61386162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083928, intron 4 of 19)	intron (NM_001083928, intron 4 of 19)	13696.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	7.30484461017965	7.219213816371	7.42376598928293	7.23610180017551	6.90137906733529	7.14330916930846	7.46817083007098	7.22691666847432	-0.136271928314864	0.499549502237016	0.768387448003553
Merged-chr17-71616787-4	chr17	71616670	71616870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175639, intron 1 of 17)	CpG	555.0	NM_175639	72515.0	Mm.257762	NM_175639	ENSMUSG00000041057	Wdr43	2610318G08Rik|AU020887|AV024208|Wrd43|mKIAA0007	WD repeat domain 43	protein-coding	4.93702781473384	5.08791171177103	5.44387960708201	5.09134222943199	5.05534197091163	5.44983085665145	5.05965428570038	5.49102374227044	0.228614952634309	0.476066067825418	0.752719059970355
Merged-chr9-21297315-4	chr9	21297223	21297423	+	898.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110300, intron 9 of 10)	intron (NM_001110300, intron 9 of 10)	-6114.0	NM_009878	12581.0	Mm.29020	NM_009878	ENSMUSG00000096472	Cdkn2d	INK4d|p19|p19INK4d	cyclin dependent kinase inhibitor 2D	protein-coding	4.69351017069169	4.45232067184221	4.26894917902202	4.44757704329619	4.26783540630502	4.54283862852032	5.01406298436002	4.57776129579683	0.334944614218817	0.398544234725073	0.696793179038619
Merged-chr14-101559668-4	chr14	101559639	101559839	+	877.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	Lx6|LINE|L1	49452.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	3.67048071796793	3.48591049680457	4.03954322660104	3.87943980217926	3.39659870955643	3.48815202724388	3.54607669419869	3.95451937536147	-0.534737322000644	0.304849524885846	0.617375148144924
Merged-chr4-16160195-3	chr4	16160101	16160301	+	922.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138102, intron 1 of 11)	intron (NR_138102, intron 1 of 11)	3442.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	4.56686223267889	4.04558411612605	4.78418484908414	4.78013668876462	4.56645009538456	4.57418663651532	4.46580478901111	4.30383704589079	-0.222783448190885	0.584370354576214	0.817596016641525
Merged-chr3-131698328-4	chr3	131698238	131698438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	132306.0	NM_001289477	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	8.29508109732759	8.16633576004623	8.20456238158838	8.18308721820875	8.28832673791073	8.39972016697766	8.17768967442316	8.09366902560253	0.0433308941427509	0.78304045789155	0.915463993932762
Merged-chr3-133758667-4	chr3	133758560	133758760	+	907.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-214270.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	3.37395963744749	3.85494568450105	3.84272766105057	4.07104813142147	3.45850806383903	3.8052417586773	3.67122782411175	4.18287065041271	-0.0323184703659985	0.952167406071732	0.983078872892764
Merged-chr15-27927161-3	chr15	27927043	27927243	+	771.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	98705.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	3.28049839635738	3.10832152029814	3.48024965657075	2.92100311654012	3.2595956429483	3.01798558541158	2.90044235777079	3.22401565589801	-0.362852953401125	0.552838604491037	0.799873237323185
Merged-chr1-135280860-3	chr1	135280744	135280944	+	683.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 1 of 9)	MLTR31A_MM|LTR|ERVK	3240.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	3.55302205296894	3.60660946425194	3.70841910600649	3.92213240508328	3.53382448224646	3.28566488939449	3.6927278026337	3.43708010052101	-0.699471338590635	0.173372724882552	0.467389962671484
Merged-chr11-117986825-4	chr11	117986724	117986924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133757)	promoter-TSS (NM_133757)	-33.0	NM_133757	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	5.30558270660471	5.70878275664448	4.93114165811625	5.26872220038433	5.89940148831522	5.84685826129942	5.54295438815891	5.78592838183771	0.7522594617396	0.0127417760584804	0.0938091516411434
Merged-chr4-141385441-3	chr4	141385390	141385590	+	744.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024412, intron 18 of 19)	intron (NM_024412, intron 18 of 19)	12609.0	NM_001146307	12733.0	Mm.167900	NM_024412	ENSMUSG00000033770	Clcnka	C75963|CLC-K1|Clcnk1	chloride channel, voltage-sensitive Ka	protein-coding	3.23154387039545	2.78834876963833	2.78879787772112	3.04932783432088	3.43995353717609	3.17037959632002	3.16461150715677	3.05840478431477	0.941438620745	0.125320992565861	0.392906674142633
Merged-chr7-75782656-4	chr7	75782560	75782760	+	926.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65678.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	5.06118461991365	5.08425735433065	4.28071781709542	4.55189499359086	5.37920654233255	4.8031768132076	4.55979148860099	4.96253482646113	0.372328228017963	0.369835688225093	0.67403749717511
Merged-chr8-22805713-4	chr8	22805595	22805795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122820)	promoter-TSS (NM_001122820)	-41.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	8.56464729750397	8.66213854447614	8.58019619885637	8.93263353848815	8.66410968407832	8.66524537457965	8.75977463390444	8.3428811392945	-0.103270481587514	0.550725643890336	0.798673593705145
Merged-chr8-122556248-4	chr8	122556206	122556406	+	844.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4977.0	NM_001357349	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	4.22315988522973	4.18272026508644	3.84679479040704	3.97013273260608	4.14887106844466	4.02207029667369	3.71902630462252	4.04672033436641	-0.1624824164277	0.712957204688191	0.885140027660117
Merged-chr5-99216878-4	chr5	99216785	99216985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145839)	TTS (NM_145839)	36042.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.46061064895205	8.0359830622189	7.53742831050087	7.34224103970188	7.53102051146336	7.82009607061058	7.73297157898683	7.38670519832123	0.00811762333502788	0.970479357749178	0.989436241028349
Merged-chr15-57893470-6	chr15	57893400	57893600	+	946.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR65|LTR|ERV1	-1082.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	3.492284905646	3.42212782915534	3.80146557179355	3.52629670200619	3.46936684832411	3.66664680342316	3.47964997759802	3.8438647294102	0.176346392240363	0.723162898872149	0.889499763377896
Merged-chr5-107921584-4	chr5	107921467	107921667	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 2 of 4)	intron (NM_026062, intron 2 of 4)	21039.0	NM_016980	100503670.0	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	4.96063101095527	4.44863204899145	4.43597112791242	4.57131069895924	4.8505335491092	4.78315754542372	4.84201804825032	4.33725468574239	0.228238945982394	0.546210756702576	0.796283117565136
Merged-chr4-59753716-3	chr4	59753629	59753829	+	787.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001015681, exon 4 of 4)	3' UTR (NM_001015681, exon 4 of 4)	30126.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	4.11165845824095	4.23968445844452	3.71703291594047	3.80213914468676	3.97135815633434	3.89421915349868	4.09341592035819	3.46275854629998	-0.285490878830485	0.563937003615863	0.806551268713802
Merged-chr11-22850442-6	chr11	22850420	22850620	+	881.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	9215.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	2.98484856513607	2.77496093482194	2.81573604025208	2.73188974209631	2.73432706199631	2.5725870859502	2.67997664925277	2.92996045179133	-0.426518243831453	0.512158485324622	0.775701492755237
Merged-chr19-24477513-4	chr19	24477398	24477598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026520)	promoter-TSS (NM_026520)	-24.0	NM_026520	68034.0	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|Gm9849	family with sequence similarity 122, member A	protein-coding	8.01703847250448	8.09881295743288	8.18340239469081	7.9946914497447	8.19586266065603	8.3550804004339	8.06508364479349	7.92882892023933	0.0942052051804612	0.577681164166463	0.814201742353153
Merged-chr14-20546580-4	chr14	20546490	20546690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310427)	promoter-TSS (NM_001310427)	-17.0	NM_008914	19056.0	Mm.274432	NM_008914	ENSMUSG00000021816	Ppp3cb	1110063J16Rik|Calnb|CnAbeta|Cnab	protein phosphatase 3, catalytic subunit, beta isoform	protein-coding	6.84070051244297	7.06088247624834	6.60765020804453	6.69064655119563	6.82880735010892	6.4985528902112	6.7937845399779	6.50254116200336	-0.193418097560481	0.385225360070217	0.6866834265217
Merged-chr9-21313411-4	chr9	21313306	21313506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1073.0	NM_009678	11768.0	Mm.22239	NM_009678	ENSMUSG00000003309	Ap1m2	D9Ertd818e|[m]1B|mu1B	adaptor protein complex AP-1, mu 2 subunit	protein-coding	6.36679852609555	6.78113914457401	6.11532101538953	6.16391519664674	6.39105469599611	6.20430466241814	6.2816177116153	6.17383911621695	-0.166213585148887	0.513736770959822	0.776626777135012
Merged-chr2-6086008-4	chr2	6085840	6086040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44245.0	NM_144883	227545.0	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	5.32996508256317	5.45053887748663	6.07218087894879	5.86801010648835	5.45600013882953	5.40944354545518	5.36749460221417	5.76300196976753	-0.360777440986281	0.24218636189771	0.552873093441858
Merged-chr5-113594575-4	chr5	113594484	113594684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44164.0	NM_177292	320916.0	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	6.02107419771536	6.0903561291218	6.32893374317361	5.52447909965506	6.37777933668214	6.34061983775746	6.09481505474805	5.67087712266541	0.225783765096576	0.451777345942165	0.736246988273402
Merged-chr2-165056611-5	chr2	165056568	165056768	+	833.862854	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027852, intron 1 of 7)	intron (NR_027852, intron 1 of 7)	1032.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	3.31060662629745	3.70622703107441	3.23954971882155	2.89191862584696	4.24961758275438	3.8532990261062	3.60696925461599	4.04349020618117	2.01802786622723	0.000451467008094726	0.00710165086611591
Merged-chr8-106612282-1	chr8	106612182	106612382	+	858.0	f0_balb.idr	intron (NM_009864, intron 2 of 15)	ID2|SINE|ID	8932.0	NM_009864	12550.0	Mm.35605	NM_009864	ENSMUSG00000000303	Cdh1	AA960649|ARC-1|E-cad|Ecad|L-CAM|UVO|Um	cadherin 1	protein-coding	4.07659120320557	3.56345925802067	4.11763520698085	3.91757102243463	3.69232345661319	3.69882385385635	3.56804945243061	3.74873981852701	-0.748285102999843	0.119894786335089	0.383308973973468
Merged-chr7-44745339-4	chr7	44745240	44745440	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289839, intron 1 of 4)	intron (NM_001289839, intron 1 of 4)	3009.0	NM_001289836	243963.0	Mm.382935	NM_178734	ENSMUSG00000048012	Zfp473	D030014N22Rik|Znf473|zfp-100	zinc finger protein 473	protein-coding	5.84740266339898	5.70780105172119	5.49936209467509	5.78579441511822	5.64877675269609	5.6463740252137	5.58108502772532	5.27715010294698	-0.287326711599621	0.29232608903756	0.604654036582073
Merged-chr3-104523784-4	chr3	104523667	104523867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11849.0	NM_001310698	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	6.02795762964342	5.70202586143346	6.36718672634685	6.49299848081883	5.49296176495488	5.37946778075117	5.70141809775269	5.67376042825429	-1.01274122740601	0.000561081174808621	0.0084702432538076
Merged-chr3-59342669-4	chr3	59342563	59342763	+	833.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162884, intron 1 of 6)	L1_Mm|LINE|L1	1593.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	4.07177007838852	3.82320471957553	3.9389443138388	3.81689201177544	3.98184476584983	3.67692191171738	3.96742344057049	3.55821498212355	-0.265075937436764	0.569709313091395	0.809521074731647
Merged-chr10-67115765-4	chr10	67115660	67115860	+	974.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11498.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	5.15341892738808	4.94518653181861	4.96145972988676	4.89881416401194	4.91345851372452	4.95118177706132	4.62757990837942	5.20885851155172	-0.0898351837686974	0.786420471619437	0.91692803612567
Merged-chr11-94548465-4	chr11	94548367	94548567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013381, intron 2 of 8)	intron (NM_001013381, intron 2 of 8)	740.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	5.71710518354609	5.74085499243648	5.7866017604472	5.27420325574745	5.46117466307025	5.38300343129848	5.45933122458826	5.42534904442025	-0.332925217471769	0.253240099801502	0.564547937715163
Merged-chr17-51813276-6	chr17	51813196	51813396	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163632, intron 1 of 10)	CpG	-1112.0	NM_001357636	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	4.85763723181853	4.61039055244586	4.78889695196152	4.84765217302957	4.64452904732373	4.39600277155812	4.8009682876291	4.67375742364201	-0.304531802533133	0.381864234735757	0.684066904018132
Merged-chr5-22856647-3	chr5	22856549	22856749	+	873.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359998, intron 1 of 3)	intron (NM_001359998, intron 1 of 3)	-109765.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	3.3975564778141	3.21028262065473	3.31576212993995	2.90880378276342	4.72319918187501	4.83799964282465	4.79068063311956	4.8704206411839	4.94503740721172	7.0171340649509e-19	2.07250035522465e-16
Merged-chr11-17005707-4	chr11	17005608	17005808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	3010.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	5.20850282646228	5.00048688928796	5.17783398226284	5.1181624367006	5.11609877750899	5.35152075392462	5.05360111892618	5.48389197149226	0.242985254984278	0.423030166033295	0.714964864073543
Merged-chr13-56353417-4	chr13	56353312	56353512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9488.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	8.27421602670027	8.24200535393943	8.24261617206881	8.31635855804132	7.66660451273205	7.78053754491222	7.74598529467217	7.60655047709735	-0.738158044968367	2.30948287085553e-06	7.43831136944007e-05
Merged-chr13-115101890-4	chr13	115101734	115101934	+	978.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033228, exon 1 of 29)	5' UTR (NM_001033228, exon 1 of 29)	130.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	4.41285789185146	3.77871784099619	4.73934593362403	4.33325175313317	4.34179627984455	4.66425536914223	3.90239866654202	4.36876848846079	-0.0262432753828476	0.956034343594189	0.984427979959651
Merged-chr5-134101743-1	chr5	134101643	134101843	+	552.0	f0_c57.idr	intron (NM_030719, intron 1 of 8)	intron (NM_030719, intron 1 of 8)	1995.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	3.79480590447932	3.51304335501179	3.44357566316663	3.43426779570643	3.59519441502169	3.22881028337275	3.64080405490301	3.49828076706934	-0.142214066925699	0.783775141586495	0.915808900684294
Merged-chr8-71488637-4	chr8	71488536	71488736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_032544, exon 1 of 9)	5' UTR (NM_032544, exon 1 of 9)	533.0	NM_032544	70359.0	Mm.142112	NM_032544	ENSMUSG00000007610	Gtpbp3	2410009F13Rik|AI607903	GTP binding protein 3	protein-coding	6.58455265764234	6.83697374364541	6.12026106573272	6.56499044664644	6.58545462422989	6.50448060256656	6.48850673962345	6.41491395044572	-0.0791963783892765	0.736705513754426	0.896047584392655
Merged-chr10-80173106-4	chr10	80173027	80173227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152857)	TTS (NR_152857)	183.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	6.92338923014976	6.83791368597572	6.97572761055462	6.40321476925501	7.1290440720589	7.23662049414007	6.79507350249077	7.00779183614374	0.371059315173483	0.103516211231898	0.353548409631863
Merged-chr12-33429537-4	chr12	33429429	33429629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172253)	promoter-TSS (NM_172253)	-95.0	NM_172253	28071.0	Mm.196472	NM_172253	ENSMUSG00000020561	Twistnb	2410173G11|2810024J17Rik|D16Wsu83e	twist basic helix-loop-helix transcription factor 1 neighbor	protein-coding	7.00170864086896	7.23909262816281	7.04013901637647	6.91692924158403	7.08882396901288	7.25230162954808	6.86346576555282	6.99799417010493	0.0106750437786021	0.957387863343406	0.984815156534365
Merged-chr19-4304422-4	chr19	4304340	4304540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	1782.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	5.80146263247072	5.68024768927253	5.82640926855669	6.01296556642012	5.85378400161688	5.90338159340177	5.72427423365482	5.95684679402132	0.0185277624209036	0.941643035610982	0.978976588280915
Merged-chr10-87910834-4	chr10	87910726	87910926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111274, intron 2 of 4)	intron (NM_001111274, intron 2 of 4)	49715.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	5.36401118983893	5.58034415318808	5.45238020628718	5.54306729189897	5.36173870380505	5.27664534005904	5.39688192650415	5.65567014275312	-0.113981666571228	0.683010931335849	0.870163506023883
Merged-chr4-12275386-4	chr4	12275245	12275445	+	855.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-103330.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	4.2293054847157	3.93134238326336	4.53791513182646	4.39789924713052	4.35383244826979	3.81924573605215	3.92166203338922	4.08938036003644	-0.555659743232032	0.223158250078734	0.531190217782638
Merged-chr15-67405695-4	chr15	67405593	67405793	+	891.7374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	178924.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	4.47723640581052	4.16841333257157	4.52052072439638	4.89212653922927	4.47503093954205	4.77343254289865	4.54068121447379	4.71128782887066	0.140593181330133	0.724268460679783	0.890108631350396
Merged-chr12-111426687-3	chr12	111426588	111426788	+	868.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 9 of 13)	MIR|SINE|MIR	9243.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	3.59486985695451	3.52996012990046	3.33063323055546	2.97891732708415	3.51918379081393	3.38450965128704	3.19670608321513	3.38625991546663	0.023878071151027	0.966678634918111	0.988240291770836
Merged-chr19-10203965-4	chr19	10203891	10204091	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026919)	promoter-TSS (NM_026919)	-48.0	NM_001271614	14156.0	Mm.2952	NM_007999	ENSMUSG00000024742	Fen1	AW538437|FEN-1	flap structure specific endonuclease 1	protein-coding	5.50944986923369	6.29196118937638	6.2276770402648	5.5813982997313	5.84600451525801	5.9323594148693	5.35740283047476	5.59378278027901	-0.393391713636105	0.222802336880857	0.530983202865467
Merged-chr18-5807265-4	chr18	5807139	5807339	+	921.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	214592.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	4.50066075511543	4.92776323821178	4.66074171440123	4.54391679239377	4.34296616180982	5.00457318852827	4.39379897163893	3.92540432058275	-0.433269428362304	0.327864160848523	0.639190489551923
Merged-chr14-63164975-3	chr14	63164834	63165034	+	824.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360211, intron 1 of 7)	intron (NM_001360211, intron 1 of 7)	12953.0	NM_001360211	14137.0	Mm.474432	NM_010191	ENSMUSG00000021273	Fdft1	SQS|SS	farnesyl diphosphate farnesyl transferase 1	protein-coding	3.62008806795758	3.6499728594837	3.13344759598055	3.60579413372041	3.58177344651423	3.51326650383544	3.74776708622945	3.45641620172408	0.17999485706493	0.732258051845616	0.893952343664963
Merged-chr7-79729392-4	chr7	79729301	79729501	+	809.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175640, intron 3 of 8)	intron (NM_175640, intron 3 of 8)	3375.0	NM_175640	103968.0	Mm.254917	NM_175640	ENSMUSG00000030546	Plin1	6030432J05Rik|Peri|Plin	perilipin 1	protein-coding	3.98355441825342	3.69288052446729	3.73357519639502	3.65406602260524	3.88609213818805	4.06023759665643	3.82377363473309	3.98169159980674	0.504152344949269	0.255682246641527	0.56732462463597
Merged-chr2-119742266-4	chr2	119742160	119742360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146125)	promoter-TSS (NM_146125)	-77.0	NM_146125	228550.0	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding	5.87072317686103	5.92593172457394	5.51854203028539	5.94129862558093	6.33646327449583	6.04786054089285	6.29280515487582	5.743047766323	0.470736407545289	0.0813300734340367	0.309417833291006
Merged-chr5-62765904-4	chr5	62765795	62765995	+	964.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178407, exon 1 of 33)	5' UTR (NM_178407, exon 1 of 33)	282.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	4.99106237680689	4.67140919927227	5.2044035063748	4.50970109420567	4.98004912480877	4.91258828410589	4.96745998206297	4.84890615400894	0.156492446852806	0.660721386782129	0.859001764228847
Merged-chr17-26509215-2	chr17	26509115	26509315	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013642)	promoter-TSS (NM_013642)	-743.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	5.34822023076164	5.77906601634801	5.05169186484961	5.57384265588932	5.82695131625956	5.94648683762467	6.03768640827986	6.12005686683098	0.825569244091305	0.00429891645097449	0.0424106131758716
Merged-chr16-22121372-4	chr16	22121294	22121494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	L1MA5|LINE|L1	41905.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	5.41832666303479	6.05478091464779	5.77909310112205	6.26439405908303	6.40289523435287	5.84982341070473	5.98655798815984	6.59355043337204	0.483508644796935	0.120783858540901	0.384786029945969
Merged-chr5-149031393-4	chr5	149031290	149031490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	20226.0	NM_001313894	15289.0	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	7.01332527316628	6.35257650984582	6.93036062114889	6.88277276311389	6.60239946531735	6.7166786514976	7.00202160416207	6.27135203491767	-0.205733166428764	0.418548252079902	0.711957128325854
Merged-chr7-30419659-4	chr7	30419557	30419757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011827, intron 1 of 3)	intron (NM_011827, intron 1 of 3)	197.0	NM_011827	23900.0	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	6.89799306130671	6.94124782393349	7.34645253845552	6.63150331143047	7.05547412727705	6.8413347010138	7.06195476648622	6.92090125237522	0.0136942856188242	0.951781347134664	0.982835405595506
Merged-chr13-18779794-4	chr13	18779682	18779882	+	833.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 4 of 28)	MTC|LTR|ERVL-MaLR	62490.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	4.41290291791301	4.10947567259029	4.49484699913002	4.74165418244228	4.46193279010415	3.96793742954437	4.54947285634461	4.36819604444133	-0.259184226185938	0.542470009131716	0.793833794123973
Merged-chr15-25365613-4	chr15	25365499	25365699	+	876.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	48165.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	4.30673844265284	4.09031910740814	4.30740445951634	4.19285322904468	4.49839680686998	4.24616475295223	4.37113628038817	4.26065088813808	0.325304445619353	0.398252913637971	0.696492485008283
Merged-chr6-6577803-4	chr6	6577711	6577911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009169, intron 1 of 2)	MIRb|SINE|MIR	847.0	NM_009169	20422.0	Mm.2469	NM_009169	ENSMUSG00000042541	Sem1	DSS1|Shfdg1|Shfg|Shfm1	SEM1, 26S proteasome complex subunit	protein-coding	5.5359650111318	5.93640485033637	5.59537511586124	5.77513720102794	5.92955808864467	6.18046204530402	5.91296988786748	5.96062510661897	0.427747902060701	0.0947911717148126	0.336870108015143
Merged-chr19-37604162-3	chr19	37604061	37604261	+	912.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175353, intron 17 of 21)	intron (NM_175353, intron 17 of 21)	53743.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	4.06574141942313	3.98478001725472	4.28228882728961	4.43601394153784	3.65177934121787	4.09188715469375	3.79220742411739	4.06387983137738	-0.836366566342076	0.0665623821355011	0.274976424725643
Merged-chr10-127292209-4	chr10	127292097	127292297	+	884.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290183, intron 1 of 2)	intron (NM_001290183, intron 1 of 2)	1404.0	NM_001290183	13198.0	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	3.73130181047983	3.89578122267892	3.67652039169531	3.98073111312094	3.92992508089961	3.84960816986568	3.60653022266132	4.10191569948206	0.136366983565992	0.769868202781773	0.909883669779186
Merged-chr3-153262159-4	chr3	153262073	153262273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	36476.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	5.76267055413673	5.68606494898479	5.90377684885467	6.04259209401541	5.88326899866612	5.96292723100415	5.78260749317475	5.45441574216296	-0.130369801091192	0.628076580294716	0.841427212108636
Merged-chr10-51535502-4	chr10	51535407	51535607	+	891.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	44609.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	5.07784895948135	5.3749023786979	5.60080250997227	4.51638297542875	5.27959873767421	4.9962019175309	4.83362853680781	5.2933333111551	-0.141448150004241	0.715490814243579	0.886273265702168
Merged-chr1-186202734-3	chr1	186202612	186202812	+	886.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85402.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	3.55967615871939	3.57288298517736	3.40522742337775	4.03801964680636	2.81453356749158	3.21178237756526	3.01796952859668	2.87294581094538	-2.97685122895646	2.07373439887022e-05	0.000525476471260889
Merged-chr12-20815781-4	chr12	20815674	20815874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015521)	promoter-TSS (NR_015521)	5.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	6.33359568364567	5.86346960364269	6.3180429097903	6.41936338296034	5.63572793683748	5.64426694945801	6.0866161019451	5.55322313591307	-0.806916205939171	0.00338199364815548	0.0350760492324143
Merged-chr8-79362583-4	chr8	79362482	79362682	+	899.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 2 of 6)	L2c|LINE|L2	36886.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	4.3018052518576	4.12489460479155	4.16497510955579	4.41813340071616	4.45756332692422	3.89610017747524	4.2394701681374	4.60626827764244	0.159777479348851	0.706726768648884	0.882215762445699
Merged-chr2-113911366-1	chr2	113911266	113911466	+	779.0	f0_balb.idr	Intergenic	Intergenic	-62705.0	NM_181416	228482.0	Mm.45753	NM_181416	ENSMUSG00000041219	Arhgap11a	6530401L14Rik|mKIAA0013	Rho GTPase activating protein 11A	protein-coding	2.97016110387641	3.20205085812761	3.43771382430024	3.36730179984246	2.48421424164085	2.72198697859949	2.68654346583271	2.90493174496034	-2.89895214987863	0.000233179143882492	0.00412461686938666
Merged-chr3-40525532-4	chr3	40525438	40525638	+	874.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2626.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	3.62987648303376	4.07155547385208	3.24780452746593	3.60441481132322	3.90924950587652	3.85654686948491	3.66985688054833	3.62838506482327	0.297732373589844	0.573321928206535	0.811818284551066
Merged-chr3-138493914-4	chr3	138493821	138494021	+	947.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4539.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	5.93492071259142	5.53515400985722	5.87720136422744	6.0120817914477	4.89587616159899	5.27852046476943	5.17732388798304	4.38316997589312	-1.58063606201883	5.64958854618863e-06	0.000165146637835384
Merged-chr6-72884934-4	chr6	72884850	72885050	+	909.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019715, intron 1 of 6)	MIRc|SINE|MIR	14342.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	4.55642876537658	4.21557741483775	4.06667990662384	4.7609888040703	4.30172504822937	4.24542940819545	4.33752665890705	4.43808766527608	-0.27107672012241	0.517351479562827	0.778811855504145
Merged-chr12-4161509-3	chr12	4161403	4161603	+	898.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	URR1B|DNA|hAT-Charlie	27350.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	4.19642116357216	4.02296667402582	4.36118196655399	3.98217269061625	4.03861112661834	4.3671110110549	3.94078097288631	3.95462090035078	-0.143459367531081	0.738481340929283	0.896757939231702
Merged-chr15-86216715-4	chr15	86216616	86216816	+	840.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	MLT1C|LTR|ERVL-MaLR	2257.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	5.12262915443633	4.41295717670414	5.7298340237872	5.54734342822936	4.42232834227114	4.14684446763488	4.40415673463085	4.81650479885435	-1.67138536991133	0.000241842219858045	0.00424793347128757
Merged-chr18-82475947-4	chr18	82475845	82476045	+	932.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 1 of 3)	intron (NM_001025245, intron 1 of 3)	822.0	NM_010777	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	4.67241473035163	4.43393137020925	4.74307628522047	4.42068226301578	4.39488236749952	4.47616326189114	4.37316335193863	4.47643387284783	-0.30486924160208	0.409080572193958	0.704791463679563
Merged-chr9-119341142-4	chr9	119341039	119341239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130864)	promoter-TSS (NM_130864)	-155.0	NM_130864	113868.0	Mm.205266	NM_130864	ENSMUSG00000036138	Acaa1a	Acaa|Acaa1|D9Ertd25e|PTL	acetyl-Coenzyme A acyltransferase 1A	protein-coding	8.73386809150081	9.06109909325613	8.88518128210148	8.58495352943604	8.94391856925183	9.20418273796935	8.86050175239721	8.90231197220036	0.19715435184239	0.251797616266312	0.563040416191876
Merged-chr14-61498400-4	chr14	61498310	61498510	+	954.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045714, intron 2 of 2)	intron (NR_045714, intron 2 of 2)	5722.0	NR_045714	75349.0	Mm.233613	NR_045714	ENSMUSG00000115656	4930556J02Rik	-	RIKEN cDNA 4930556J02 gene	ncRNA	5.18180890512123	4.91606995490514	4.85911947765174	4.76917689358981	4.63388584047633	4.751255793679	4.87194717617813	5.20722952363049	-0.105057883248158	0.763347706298467	0.90713960302321
Merged-chr2-173679429-3	chr2	173679328	173679528	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024436, intron 2 of 6)	intron (NM_024436, intron 2 of 6)	19583.0	NM_024436	19334.0	Mm.275304	NM_024436	ENSMUSG00000027519	Rab22a	3732413A17Rik|AI662177|AW319644|AW550514|E130120E14Rik|Rab22	RAB22A, member RAS oncogene family	protein-coding	3.62281651298083	3.88421908639426	3.67947700939725	3.7985903644518	3.67707035070077	3.79757945223735	4.03869567764857	3.67748355862638	0.139160606863784	0.764020914137234	0.907492132891533
Merged-chr2-102987129-4	chr2	102987041	102987241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85476.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	6.94509849685833	7.12373177296717	7.11738968426499	6.64776657540608	6.60125539160686	6.6901639929495	6.35262319864883	6.05714760432119	-0.732724475987718	0.00285576466160393	0.0307870738508679
Merged-chr11-97026230-4	chr11	97026117	97026317	+	971.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_133649, exon 1 of 2)	non-coding (NR_133649, exon 1 of 2)	201.0	NR_133649	100127433.0	Mm.156282	NR_133649	ENSMUSG00000087067	Gm11532	Sp6os	predicted gene 11532	ncRNA	5.26530053213452	5.24450114539569	4.81686487147119	5.16208204356541	5.36879637861397	5.49429141186162	4.83479975918924	4.7718220766065	0.0464610904161132	0.89487481959733	0.96069135232764
Merged-chr15-82165502-3	chr15	82165398	82165598	+	742.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033218, intron 1 of 18)	B3|SINE|B2	18229.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	3.94199087362434	4.49098587974254	4.14736037458879	3.63736723519288	4.59281787628668	4.1221670821063	4.12912830074624	4.3214828461003	0.557419382297593	0.235245913849452	0.545207351410163
Merged-chr10-57690364-4	chr10	57690259	57690459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039050, intron 2 of 4)	intron (NM_001039050, intron 2 of 4)	39378.0	NM_001190402	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	5.89608926470719	5.27806779345595	5.7285477542753	6.30417579059208	5.90749428165255	5.71316182590962	6.1105190807859	5.84703926815049	0.0485517251219285	0.877667122532782	0.954269407909636
Merged-chr17-35209944-2	chr17	35209848	35210048	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-4597.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	5.59204205777122	5.57716888675308	5.45407347004055	5.61557599262636	5.76818545460371	5.50811731662484	5.51151279582098	5.66558529871585	0.102343829407451	0.699282880103006	0.87873985942593
Merged-chr3-81983326-4	chr3	81983213	81983413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7585.0	NM_019911	56720.0	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	5.78849528338579	5.58555448430695	5.78950898360328	6.09856745194083	5.92649089923763	5.94037649630892	5.80823240345443	6.05093395227879	0.136526222017481	0.604835184725626	0.828583925739738
Merged-chr19-3951622-4	chr19	3951547	3951747	+	904.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7161.0	NM_028545	73458.0	Mm.482922	NM_028545	ENSMUSG00000037263	Aldh3b3	1700055N04Rik	aldehyde dehydrogenase 3 family, member B3	protein-coding	4.11780510774459	3.63887407978212	3.93089102261859	4.18331465737639	4.04048523109225	3.83072930173413	4.18330099879912	3.97806945122105	0.0586668574366391	0.89746476968377	0.961730314099217
Merged-chr6-53216861-4	chr6	53216760	53216960	+	744.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4304.0	NR_073371	231989.0	Mm.372520	NR_073371	ENSMUSG00000107935	Gm4872	D430007I03	predicted gene 4872	ncRNA	3.5363046545764	3.78193589109181	3.90094409021195	3.72697677885479	3.8345271996181	3.38581456911176	3.88367116929248	3.80475418862589	0.0128779296672465	0.978907989708173	0.992533278305621
Merged-chr13-81352505-4	chr13	81352392	81352592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 83 of 89)	intron (NM_054053, intron 83 of 89)	280652.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	7.79329094767848	7.97027360412297	8.12957709304646	8.02429048359476	7.83390350407352	7.87435898816782	7.89717298097604	7.63964918935036	-0.222101381282851	0.19137468516577	0.49080704458508
Merged-chr12-3843629-4	chr12	3843516	3843716	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 2 of 22)	intron (NM_007872, intron 2 of 22)	18628.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	5.0906633443273	5.21901921410049	5.47290728047334	5.39724520814074	5.09533385711987	5.23186780923917	4.961683233043	5.24902084939113	-0.323461325437554	0.285265307532865	0.596974666300584
Merged-chr3-88622372-2	chr3	88622272	88622472	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	978.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	2.78576819273573	2.89095896527221	2.65486048413831	2.45132382567712	2.62968353289403	2.83004442592625	2.89345050167193	2.78469150557351	0.410334452185255	0.536264532693908	0.79028515885341
Merged-chr11-6475228-7	chr11	6475225	6475425	+	989.464294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011221, exon 1 of 1)	exon (NM_011221, exon 1 of 1)	751.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	5.03350756296896	4.37230766790794	4.93088063082668	4.82683855957073	5.04950921958884	5.3317254516276	5.19268251337537	4.99737734199659	0.654037291878237	0.0559972746274169	0.247659376830179
Merged-chr11-51755682-2	chr11	51755582	51755782	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290785, intron 1 of 22)	intron (NM_001290785, intron 1 of 22)	1152.0	NM_001290785	77371.0	Mm.33878	NM_175255	ENSMUSG00000036391	Sec24a	-	Sec24 related gene family, member A (S. cerevisiae)	protein-coding	3.07039037197719	3.02316903438516	3.18658334940557	2.9049035848856	3.32545525007299	3.05112203952789	2.99896375715946	3.23874465114603	0.508355768381266	0.375265820034632	0.678274822106106
Merged-chr1-177703610-4	chr1	177703516	177703716	+	905.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26198.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	4.47496622293538	4.85056989840413	4.34364793046741	4.58435481390236	4.41384909463131	4.51850996622073	4.32474176301719	4.4303677101487	-0.363834333411312	0.333025556566853	0.643946257670112
Merged-chr5-91302331-4	chr5	91302209	91302409	+	986.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-19233.0	NR_040428	100503265.0	Mm.125059	NR_040428	ENSMUSG00000107198	Gm19619	-	predicted gene, 19619	ncRNA	6.45612162386334	6.20202480210618	6.54398670965978	6.59691399308865	5.14550717848693	5.88048579547311	5.18615401067439	5.32104069849263	-1.71059102514795	3.07971763398374e-09	1.80867344446641e-07
Merged-chr18-8624696-2	chr18	8624596	8624796	+	688.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3b|LINE|L1	-588160.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	2.78658057679624	2.78497194312458	3.00103726256204	2.98478965018084	3.03389119765127	3.17910345651291	3.64196624945095	3.346090583343	1.62547065221078	0.00878160044437562	0.0718796616870069
Merged-chr2-45277773-4	chr2	45277678	45277878	+	918.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160336.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	4.98997889784046	4.58650260517234	4.61887982570398	4.37879636938605	4.55286999809509	4.58214841887759	4.5972925735356	4.49217702446538	-0.197812046198369	0.597273051756257	0.825240678531284
Merged-chr16-4731613-2	chr16	4731513	4731713	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136066, intron 1 of 5)	ORR1A3|LTR|ERVL-MaLR	5252.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	3.11716791091388	3.3570522646046	2.9301997323814	2.9692829185271	2.84988821823327	3.34047091050885	3.04702083518446	3.05633818832805	-0.0914424115339809	0.880685517790076	0.955211005891163
Merged-chr15-74924099-3	chr15	74923990	74924190	+	960.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30961.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	3.92090704605683	4.32397326434859	3.87900167198861	3.31454495890642	3.13595046604955	3.26429685183874	2.98028526452415	3.06731747703082	-2.92967397254512	1.75251659696506e-05	0.000454269405882652
Merged-chr17-56009223-4	chr17	56009128	56009328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026530)	promoter-TSS (NM_026530)	27.0	NM_026530	68047.0	Mm.358710	NM_026530	ENSMUSG00000003199	Mpnd	E130307M08Rik	MPN domain containing	protein-coding	7.07898817077222	7.07532093486178	6.82896493434063	7.0091086107856	6.78515999772435	6.54254820914398	6.96254302189692	6.62896646976554	-0.364092769632796	0.0770138671571013	0.300004021432683
Merged-chr9-55309731-4	chr9	55309633	55309833	+	815.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17180.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	3.67239544450293	3.75166357045149	4.1197353731529	3.63777698995222	3.36136489251862	3.61883630138058	3.54767107100356	3.77358693947466	-0.699039434114496	0.165964568251321	0.456928587863273
Merged-chr13-37541858-4	chr13	37541771	37541971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	196526.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.6278656644182	5.51794383456798	5.44158345373197	5.2364264052693	5.69986943469244	5.43305820009327	5.67225709969789	5.31701870886221	0.17373439815957	0.545623473130027	0.795970987775933
Merged-chr1-191097264-4	chr1	191097155	191097355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1159.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	5.16101578610545	5.2384138331908	5.12956855563347	5.02407902724438	5.43256820447103	5.23693702783895	5.00324112709797	5.02399700997022	0.12176670523452	0.693964618932745	0.875656793802988
Merged-chr10-111544956-3	chr10	111544804	111545004	+	745.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	38618.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	3.64270494269887	3.9026281533161	3.99204588638752	3.80540201074278	3.8776639362998	3.76057775364155	3.83775748337306	3.58288887741186	-0.192045888303144	0.676539041340983	0.867197108600875
Merged-chr1-166730402-4	chr1	166730309	166730509	+	783.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-48564.0	NM_001347135	240894.0	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding	3.92054258088895	4.0144730755991	3.92109915814871	4.02861702593368	3.85641345310162	3.93621506464887	4.08935910200024	4.01548782978925	-0.0132379040116689	0.975023129965898	0.991077190869715
Merged-chr14-103543555-4	chr14	103543452	103543652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022886, intron 7 of 30)	intron (NM_022886, intron 7 of 30)	30211.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	5.76164128327104	5.4003583780544	5.56304898061167	6.05212091386062	5.15270113722065	5.56681793725925	5.33170424370224	5.80380821000756	-0.430697525821338	0.17472917074314	0.469251722167446
Merged-chr2-11588157-4	chr2	11588026	11588226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 8 of 11)	MTE2a|LTR|ERVL-MaLR	15073.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	6.94775328665409	7.16215283767868	7.31422934398225	7.2104733406919	7.13941171006182	6.77911576548152	7.02733097360304	7.11699610851765	-0.189669361588774	0.33978534502009	0.648910202172636
Merged-chr14-121445360-4	chr14	121445260	121445460	+	861.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59894.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	3.62904221955352	3.6095858033311	4.28075252421088	3.82987787476701	3.96944385236699	3.973252779976	3.97862332978997	3.68664876059892	0.129385565170541	0.788748112533346	0.91812687233996
Merged-chr17-35700658-3	chr17	35700585	35700785	+	662.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198833)	promoter-TSS (NM_001198833)	-95.0	NM_001198833	12305.0	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	2.94247794994348	2.82480501850265	3.09920857590297	2.30921735351429	2.85206913014716	2.42367290944147	2.55189364607222	2.69840608221085	-0.885279761847722	0.263861147071997	0.575926770059883
Merged-chr5-135990791-4	chr5	135990680	135990880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4020.0	NM_023742	74198.0	Mm.275574	NM_023742	ENSMUSG00000004947	Dtx2	2610524D08Rik|AA408415|AU022494|Deltex2	deltex 2, E3 ubiquitin ligase	protein-coding	6.13193637432259	6.39717259358336	6.43241659643795	6.37486550428612	6.47750206539915	6.15401950724711	6.08056947156794	6.34173719519666	-0.0889527755715152	0.702725443213591	0.880373386414042
Merged-chr4-129513605-4	chr4	129513509	129513709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010807)	promoter-TSS (NM_010807)	28.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	7.78587603526984	8.19570042410295	7.40344657778758	7.01374353161746	8.24894410813011	8.49078226012315	8.0418768995041	7.74191627318305	0.629606722777793	0.020518004369552	0.130233888644012
Merged-chr7-122101881-4	chr7	122101769	122101969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028177)	promoter-TSS (NM_028177)	-21.0	NM_028177	70316.0	Mm.3014	NM_028177	ENSMUSG00000030869	Ndufab1	2210401F17Rik|2310039H15Rik|2610003B19Rik|8kDa|9130423F15Rik|ACP|CI-SDAP|SDAP	NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	protein-coding	7.76993777255483	8.05783914646762	7.39868082458672	7.70487365594848	7.80913970855158	7.87591906280566	7.96198235975899	7.80464017497755	0.13953514226343	0.466862507727307	0.746541604419428
Merged-chr18-36319057-3	chr18	36318938	36319138	+	756.366638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18937.0	NM_001267796	109169.0	Mm.426423	NM_001267796	ENSMUSG00000110185	Igip	6330403M23Rik	IgA inducing protein	protein-coding	3.43007017809531	3.73374831596089	3.4305087840175	3.5111991268054	3.52889685459195	3.54466287879241	3.57776834904476	3.24393374888082	-0.171759049088308	0.736558201439893	0.896043754662457
Merged-chr13-111808403-8	chr13	111808230	111808430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	CpG	663.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	4.9906575001388	5.23876250530442	5.19371369578976	5.00570977495535	5.26595973576337	5.23729723726738	4.93094895845071	5.39105578029998	0.212048669704629	0.490159527166814	0.762136344258112
Merged-chr5-110269908-4	chr5	110269831	110270031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163538)	promoter-TSS (NM_001163538)	-32.0	NM_001163538	72542.0	Mm.61682	NM_028273	ENSMUSG00000029500	Pgam5	2610528A17Rik	phosphoglycerate mutase family member 5	protein-coding	8.11793301300938	8.09658274228061	8.12533343381267	8.0017057356037	7.95230970546388	7.86538210876015	7.60662808660038	7.6651557559905	-0.384942682851364	0.0234081437752674	0.141983872125942
Merged-chr1-176824662-4	chr1	176824568	176824768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 1 of 18)	intron (NM_001357390, intron 1 of 18)	10008.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	4.03758341843703	3.83819147211593	4.29725417523993	4.42060758905823	4.71327891040658	4.60499334747867	4.80490982141405	4.62476726501371	1.14344041481198	0.00547818487299023	0.0508186786230381
Merged-chr3-102734822-5	chr3	102734746	102734946	+	837.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243132)	promoter-TSS (NM_001243132)	76.0	NM_027533	70747.0	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding	3.02039290795593	3.35036512427899	3.21617293576648	3.43725717106053	3.1748993638891	3.3276103376498	3.26324997731666	3.53403526315536	0.188565729508977	0.736713125837504	0.896047584392655
Merged-chr2-124202792-4	chr2	124202677	124202877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 2 of 20)	intron (NM_001290997, intron 2 of 20)	19581.0	NR_040612	75946.0	Mm.415059	NR_040612	ENSMUSG00000086954	4930583P06Rik	-	RIKEN cDNA 4930583P06 gene	ncRNA	6.06914344474121	5.66971752994604	5.73002023861753	6.01275350655474	5.4132704667557	4.95090071172599	5.5997933728923	5.90742387199656	-0.619300226579576	0.0500443327788498	0.231907914249072
Merged-chr1-165624792-4	chr1	165624701	165624901	+	844.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	B3|SINE|B2	9740.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	3.90432755385301	3.87602390547067	4.24587681066984	3.89930376227801	3.84906283683673	3.69009372043548	4.02563388939597	3.50619401909761	-0.567846643830498	0.232588269421856	0.542164234902269
Merged-chr2-122440750-4	chr2	122440660	122440860	+	841.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172980)	promoter-TSS (NM_172980)	-60.0	NM_172980	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	4.5688664887224	4.76108601878317	4.73865161617555	4.20152404414755	4.91634179037252	4.99076306026584	5.37441994507307	4.98652290771998	1.04304968479223	0.00397139677037551	0.0398309216173818
Merged-chr16-55789659-4	chr16	55789527	55789727	+	893.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32511.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	4.3937170552696	4.06061795483488	3.86324537078903	4.04725148463823	4.28634029682431	3.86914061652744	3.73516211226354	4.10952451156449	-0.193583211478211	0.67373158710068	0.86586684339396
Merged-chr7-90140454-4	chr7	90140344	90140544	+	964.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	10231.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	4.55668726461915	4.90005617856273	4.86586193852521	4.12468208930058	5.1781681209886	4.60040811338877	4.8755332741971	4.59727037972921	0.431249675145819	0.292559957748163	0.604930433202316
Merged-chr19-4906641-4	chr19	4906520	4906720	+	896.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033128)	promoter-TSS (NM_001033128)	7.0	NM_001033128	52028.0	Mm.23636	NM_001033128	ENSMUSG00000006464	Bbs1	AI451249|D19Ertd609e	Bardet-Biedl syndrome 1 (human)	protein-coding	3.89318959532962	3.96279368192886	3.72480539041575	3.89670564110777	4.52293135925247	4.1675763710915	3.87795456746312	4.04095834824581	0.820891260321025	0.0658424729031235	0.273206191884195
Merged-chr2-135725638-3	chr2	135725533	135725733	+	857.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355156, intron 1 of 37)	intron (NM_001355156, intron 1 of 37)	-39205.0	NM_001355154	18798.0	Mm.38009	NM_013829	ENSMUSG00000039943	Plcb4	A930039J07Rik|AI854601|C230058B11Rik	phospholipase C, beta 4	protein-coding	3.90588636273497	3.80187051636266	4.13726705380126	4.14803384473484	3.84247109314146	3.61131020051769	3.98653296007983	4.17605077766302	-0.254263838968925	0.581372095275432	0.816253350773532
Merged-chr2-117093089-4	chr2	117092951	117093151	+	842.645874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28020.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	3.80392492784369	3.42095875732971	3.54317164908016	3.73669428449715	3.45126189912629	3.77238643832204	3.69085312824336	3.84850003898416	0.16412303843624	0.739015373367866	0.897102750030299
Merged-chr18-66453552-4	chr18	66453429	66453629	+	997.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-5075.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	4.7759575356727	5.1582721565952	5.19871690833737	5.24421576408741	5.5430482196951	5.30818498453821	5.53776072298581	5.63347571936567	0.702523205524538	0.0195452082910239	0.125991285355054
Merged-chr8-84664098-4	chr8	84663990	84664190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1238.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	8.4068741021509	8.39952517510656	7.89595287513491	7.99015310981529	8.52230112823089	8.59124398512998	8.46732832996483	8.11607729726394	0.312907463548577	0.112158445217011	0.370146790249519
Merged-chr8-39403968-3	chr8	39403867	39404067	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	105987.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	5.08886306803708	5.24852950459968	5.78489949415645	6.06650341442984	3.5925749150675	3.94873623930166	3.79323780522176	3.80611880090341	-4.97550633723083	3.89703189821691e-16	7.57887523178091e-14
Merged-chr7-43607140-4	chr7	43607051	43607251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028913)	promoter-TSS (NM_028913)	-18.0	NM_001355131	74400.0	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	6.16191559072865	6.48644382445833	5.69228086325043	5.81406407739733	6.42210732342245	6.19387559828944	6.41061610637585	5.63021872411746	0.203057809261914	0.508949532275864	0.773835474540333
Merged-chr3-53436653-1	chr3	53436553	53436753	+	742.599976	f0_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	26605.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	3.14466843607986	3.06279980936178	3.4274616718184	3.06574712739484	2.57641183617723	2.66337170473329	2.62869563522458	2.63436171625099	-3.01476423305635	0.000123892372307556	0.00242667450976322
Merged-chr12-70831359-3	chr12	70831249	70831449	+	891.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028127, intron 1 of 13)	intron (NM_028127, intron 1 of 13)	5835.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	3.44170409329941	3.42166431337606	3.74936993657087	3.68532687053881	3.29286349083255	3.29976259648509	3.63939123487306	3.60292530637376	-0.399411622547812	0.443333608821196	0.729895179599094
Merged-chr9-105484513-4	chr9	105484427	105484627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253831, intron 1 of 26)	L1MB7|LINE|L1	10606.0	NM_175025	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	6.92357890093653	7.06180975702154	6.61958104634899	6.92949987683838	7.4043697372582	7.4838904657497	7.35750178644798	6.99867830478099	0.583747092984093	0.00505848855177483	0.0479214034338571
Merged-chr4-141664187-4	chr4	141664086	141664286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033150)	promoter-TSS (NM_001033150)	-71.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	4.82329392749445	5.17981272494552	5.08369008959402	5.30103841472388	5.12247397138151	5.08040946629037	5.21539500406973	5.23773348227649	0.070352774410685	0.821490150518442	0.931717929460157
Merged-chr1-86018391-4	chr1	86018290	86018490	+	775.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3552.0	NM_001122732	70060.0	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	4.19225655500657	3.89549897415916	3.87505117779152	3.50070549198665	3.86700373508792	3.94496577097088	3.69643921326832	4.26788488564897	0.224725358236103	0.646414211483493	0.851316764282635
Merged-chr1-65180006-4	chr1	65179923	65180123	+	985.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010497)	promoter-TSS (NM_010497)	-881.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	5.30982156350288	5.09288950221702	4.80681522484714	5.19916934641115	5.10140747823518	5.62383620807637	5.57334452762854	5.47405975599489	0.591471020574829	0.0620494192291404	0.263477303125186
Merged-chr5-113815955-3	chr5	113815843	113816043	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14558.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	4.21043975750348	3.72768558279637	3.51780828501727	3.45426221805529	3.69276951533827	3.50636505496953	3.77657989040793	3.79062390008231	-0.173169546378956	0.739382670818755	0.897284218525646
Merged-chr1-71098135-3	chr1	71098026	71098226	+	821.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007525, intron 1 of 10)	MTD|LTR|ERVL-MaLR	4846.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	4.11060844602709	4.15634800841846	3.97114073037794	3.65357688591762	3.90829533235146	3.69096206229111	4.43438063681986	3.86632192205298	0.0725410840801003	0.881247465155881	0.955378233860278
Merged-chr2-4560696-4	chr2	4560584	4560784	+	841.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 1 of 11)	intron (NM_001177844, intron 1 of 11)	930.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	3.48871607527235	3.764780250968	3.27905973153999	3.54999948801987	3.97829360614949	3.60950204752626	3.91196794775688	4.54261733052526	1.47849869496128	0.00554189463194335	0.0512627053940345
Merged-chr8-70355890-3	chr8	70355753	70355953	+	870.214294	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2574.0	NM_001122829	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	3.84407706537791	3.12837304556726	3.35560927699805	3.25147995215999	3.20750743581937	3.16302874203867	3.0412479835498	2.97951197980034	-1.18317688165451	0.0528887511211613	0.239888384378585
Merged-chr10-50592679-4	chr10	50592595	50592795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198007)	promoter-TSS (NM_198007)	26.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	8.60668941469246	8.7089430677719	8.6623959888188	8.47317477508582	8.66510383366775	8.883924941355	8.86344245499382	8.66129824351211	0.198619709746307	0.195481689302933	0.496350414257963
Merged-chr2-167800237-4	chr2	167800143	167800343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	109066.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	5.48085788471974	5.74831908703519	5.51169003976068	5.11230140868978	6.17768784326137	5.6605897051408	6.13443109462465	5.9724788725186	0.892385983652305	0.00207266500713438	0.0240394692101708
Merged-chr14-79397969-4	chr14	79397865	79398065	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145960, exon 1 of 11)	5' UTR (NM_145960, exon 1 of 11)	193.0	NM_145960	211253.0	Mm.35306	NM_145960	ENSMUSG00000022022	Mtrf1	A830062K05Rik|MtRF-1	mitochondrial translational release factor 1	protein-coding	4.74237440661954	4.63276629387101	4.81455469310746	4.62952769644369	4.57594919426773	4.71909646208125	4.52435359440597	4.84541297304425	-0.0687290149213557	0.842072602585293	0.940110307562683
Merged-chr6-66973351-4	chr6	66973274	66973474	+	970.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	-63225.0	NR_040278	320172.0	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	4.92851069780993	5.26657605374151	5.52709265528849	5.59774765196307	5.11579082933767	4.80342652137345	5.82510248258916	5.07685069926366	-0.173739105034556	0.642995246880018	0.849459897971419
Merged-chr8-124349896-4	chr8	124349749	124349949	+	817.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84087.0	NM_171824	209966.0	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	2.8998288528626	3.43493592211612	3.0429868043478	2.98966884570527	3.71822605635566	3.22105200910191	3.22036728686766	3.34336532075718	1.05885729553802	0.0772329945397399	0.300533966670902
Merged-chr2-167314860-3	chr2	167314785	167314985	+	827.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	B4|SINE|B4	34293.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	3.76337664378383	4.25260234616043	4.15704791647907	4.38553982202246	3.68117106187482	3.82492483413292	3.80505864294571	3.97302668672066	-0.971447822998267	0.035732245179453	0.187738980986212
Merged-chr14-57264156-4	chr14	57264050	57264250	+	970.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130539.0	NM_001010937	14623.0	Mm.25652	NM_008128	ENSMUSG00000040055	Gjb6	AA958971|Cx30|D14Bwg0506e	gap junction protein, beta 6	protein-coding	4.66837183923153	4.89610367520859	4.97254492095884	5.10627185236971	5.02374404118136	4.56839559348736	4.91455359637508	5.15671632367536	0.0117024979752987	0.973058444435184	0.990282195228149
Merged-chr3-28032068-5	chr3	28031833	28032033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 6 of 25)	intron (NM_008875, intron 6 of 25)	47762.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	4.8970556844733	5.40304592877677	5.97787472165216	5.53702945915372	5.32864733288361	5.40915281139197	5.30066511430592	5.12662160263752	-0.37852464792499	0.265280476920234	0.577001515467012
Merged-chr15-59106099-1	chr15	59105999	59106199	+	814.5	f0_balb.idr	Intergenic	Intergenic	-24073.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	3.45062981729558	3.77738482654297	3.23418909039294	3.52061505330973	3.02711526326023	3.0848645492496	2.8932237841491	2.89962418515194	-2.18846576538141	0.000593141232164632	0.00885841371469709
Merged-chr10-127288846-4	chr10	127288759	127288959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_033072, exon 1 of 13)	5' UTR (NM_033072, exon 1 of 13)	159.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	6.7373170788702	6.76474457912842	6.19158979208888	6.25689424865112	6.71647732370368	6.95672705680739	6.60011577126993	7.07031102231769	0.485039000101993	0.0489926483432965	0.228867081212017
Merged-chr10-94480649-3	chr10	94480558	94480758	+	952.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-34199.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	3.91416093778255	3.62855574596136	3.73224708080723	3.85461489781491	3.46186084701519	3.44701874324165	3.76390583411146	3.19183253391665	-0.98026520992683	0.0608807398059705	0.2608028074037
Merged-chr13-41468469-4	chr13	41468387	41468587	+	985.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	18873.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	5.59219061142563	5.50761087875729	5.7373261219188	5.79374764183407	4.99743947418649	5.31863635252249	5.11413544180885	5.68703406623688	-0.649300046412001	0.0343103110784377	0.183071486675571
Merged-chr14-63196019-4	chr14	63195957	63196157	+	844.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2532.0	NM_201610	382913.0	Mm.239490	NM_201610	ENSMUSG00000035121	Neil2	Gm1212|NEH2	nei like 2 (E. coli)	protein-coding	3.67982200276883	3.57740159896492	3.2067070191679	3.46840064188588	3.23642279957905	3.69524827185546	3.80369146508608	3.72681214051479	0.431895552139183	0.420205408999987	0.713162823854942
Merged-chr1-153921838-4	chr1	153921742	153921942	+	848.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	21913.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	4.60470100588822	4.08609463346804	4.21849166883705	4.05926962646766	4.26134355847404	4.29880296688183	3.95387027853294	4.21587641023277	-0.145299925060332	0.732499416017416	0.893963778565797
Merged-chr8-92356095-4	chr8	92355963	92356163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033641)	promoter-TSS (NR_033641)	57.0	NR_110452	71296.0	Mm.86664	NR_033641	ENSMUSG00000031736	Crnde	4933436C20Rik	colorectal neoplasia differentially expressed (non-protein coding)	ncRNA	6.80414089405177	6.81776678269606	7.43955410897989	6.97210874739248	6.49015717042257	6.73234548041955	6.75643909592635	7.02181055960647	-0.38355103189475	0.109271259229452	0.365070122538988
Merged-chr2-84530718-3	chr2	84530631	84530831	+	590.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23858.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	2.93449935736928	2.98764118461873	2.93485866456787	3.02209684918088	2.81031875372866	2.77018690860149	2.79875591392922	3.15542773285759	-0.354000358367739	0.565057008987138	0.807206529642693
Merged-chr2-154687023-4	chr2	154686932	154687132	+	956.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	30006.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	4.7304091557728	4.72396498927733	4.65117813940676	4.80100235865482	4.92212814760064	4.78434496366984	4.95320878707314	4.83958731149745	0.297301190114133	0.360683088027266	0.665936747041206
Merged-chr12-35539202-3	chr12	35539083	35539283	+	813.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4194.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	3.44736331230978	3.32989341090055	3.61053045594772	3.97797093607195	3.29814615989588	3.44015197099819	3.64485229152225	3.44601496502517	-0.557133299060993	0.308909895721802	0.621297406554096
Merged-chr4-46916997-3	chr4	46916897	46917097	+	649.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081141, intron 1 of 18)	intron (NM_001081141, intron 1 of 18)	74717.0	NM_001081141	242425.0	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	3.51483306274722	3.5180021932909	3.88809317071902	3.79835920307273	3.0149245726766	3.10471297956683	3.2021221721842	3.66601845966985	-1.47588471225705	0.0134003202377311	0.0970909399635035
Merged-chr2-30827682-5	chr2	30827587	30827787	+	859.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133346, intron 1 of 5)	intron (NM_133346, intron 1 of 5)	613.0	NM_133346	72323.0	Mm.27656	NM_133346	ENSMUSG00000039483	Asb6	2510004M11Rik|AA409356	ankyrin repeat and SOCS box-containing 6	protein-coding	3.60597220536169	3.71109807367806	3.44491476790932	3.52325078678582	3.56883970828613	3.37205958707214	3.48759539143626	3.44313961636556	-0.326459293938721	0.511378827870801	0.7753468578583
Merged-chr11-83572414-4	chr11	83572330	83572530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011338)	TTS (NM_011338)	6206.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	6.72710139661755	6.65137855820207	7.2756436148649	6.7925302614583	6.55807557966928	6.75007502533354	6.57177260126501	6.44681838894826	-0.42204460464317	0.0683614246277207	0.279190209797519
Merged-chr2-115368528-3	chr2	115368413	115368613	+	894.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24233.0	NR_040516	78193.0	Mm.189508	NR_040516	ENSMUSG00000087309	4930528P14Rik	-	RIKEN cDNA 4930528P14 gene	ncRNA	3.73673616924905	3.81275878218754	3.93338546635539	4.37840899911268	3.62140935102199	3.62272630279627	3.6131544280879	3.50451519408922	-1.25035843510407	0.0132406199996895	0.0962189149780197
Merged-chr11-59540802-2	chr11	59540702	59540902	+	978.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359638)	promoter-TSS (NM_001359638)	-767.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	2.58615016368659	2.65317691847233	2.98158951506589	2.65629473288256	2.84538830137061	2.90726928357677	2.91207659111472	3.1396700241409	1.03999967424266	0.100854971897671	0.34856790700191
Merged-chr5-117976777-4	chr5	117976692	117976892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145564)	promoter-TSS (NM_145564)	22.0	NM_001346588	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	5.88676161975384	5.72884342965698	5.97330181601718	5.74067738261172	5.50936725711304	5.65083227699145	5.81300685998884	5.86130347518593	-0.19640180199044	0.451324755277896	0.735930650506857
Merged-chr18-23844764-4	chr18	23844658	23844858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 3 of 7)	intron (NM_001162941, intron 3 of 7)	40788.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	5.39243462263871	5.52372758617347	6.08284864499948	6.14354374924727	6.18840189990489	6.04403788246796	5.99144217735003	5.76745602271606	0.266754972532087	0.37327514888532	0.676922319351088
Merged-chr8-72474604-2	chr8	72474479	72474679	+	948.0	f0_balb.idr|f0_c57.idr	intron (NM_001359024, intron 2 of 17)	intron (NM_001359024, intron 2 of 17)	654.0	NM_001359024	27967.0	Mm.30136	NM_138585	ENSMUSG00000052488	Cherp	5730408I11Rik|D8Wsu96e|DAN16|Scaf6	calcium homeostasis endoplasmic reticulum protein	protein-coding	4.34676674103256	4.71191945290177	4.5326990427152	4.63455295201019	4.56551914513549	4.78986811321589	4.78106281021146	4.96421904525867	0.433594960875273	0.223142063633507	0.531181190686666
Merged-chr8-84415290-3	chr8	84415179	84415379	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007578)	promoter-TSS (NM_007578)	-85.0	NM_001252060	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	5.49278253455327	5.90939301146199	5.60419913827312	5.75754769440306	3.56558042314297	3.82607789270814	3.75055681769345	3.91298847478312	-5.7335389041635	3.76453836816297e-16	7.34126237006773e-14
Merged-chr6-129476912-4	chr6	129476811	129477011	+	857.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4132.0	NR_132130	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	3.82723108217995	3.58820044132041	3.50880893280069	3.58302139556501	3.98626162106978	3.62477299297953	3.85680041121867	3.56584950927622	0.454666709877849	0.343533608130446	0.652237361779596
Merged-chr3-10306997-4	chr3	10306890	10307090	+	918.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5807.0	NM_029310	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	4.36604036509534	4.62585723934541	4.7193668997684	4.09127195838085	4.34921592880989	4.49661419656617	4.5903679771603	4.40827991312316	0.00566944174258019	0.98871249106261	0.995492522898152
Merged-chr8-105263551-4	chr8	105263430	105263630	+	867.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033161, intron 1 of 4)	intron (NM_001033161, intron 1 of 4)	1064.0	NM_001033161	71609.0	Mm.264255	NM_001033161	ENSMUSG00000031887	Tradd	9130005N23Rik|AA930854	TNFRSF1A-associated via death domain	protein-coding	3.88580154587572	4.13457628495684	4.14321318288948	4.33494258372172	4.19040434748548	3.94959233203907	4.256526053156	4.43059990075951	0.175303525547552	0.680794767322675	0.868956507598538
Merged-chr2-30496036-4	chr2	30495907	30496107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21808.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	5.29835561570127	5.32158212375767	5.12922303373082	5.21387964224111	5.40092648445369	5.7053687428113	5.78566697137315	5.72385024137705	0.717054319419353	0.0105395113255786	0.0820400751100128
Merged-chr1-92755419-4	chr1	92755307	92755507	+	944.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76238.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	4.75749224948186	4.47365476864114	5.52525480433559	5.3103268980597	4.54085486804644	4.01662319216178	4.69722531943813	4.36238170303965	-1.36971618659603	0.00243956032070179	0.0272598844689533
Merged-chr6-114883603-4	chr6	114883498	114883698	+	982.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	38223.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	4.98190590710812	4.78675348177629	4.88253429418526	4.93861986633804	4.75358187134195	4.402005671894	4.71310556678354	5.01099545044595	-0.327956933706045	0.343898568361482	0.652495167197173
Merged-chr1-24553616-4	chr1	24553518	24553718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 4 of 50)	intron (NM_007733, intron 4 of 50)	33819.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	5.35400543252832	5.43561774094573	5.50063439354161	5.75126131462424	5.71263403483513	5.26102681309577	5.6271758624934	5.35122462640211	-0.0392788995314876	0.893917320031132	0.960450328240811
Merged-chr2-61582287-2	chr2	61582187	61582387	+	697.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011529, intron 1 of 7)	B4|SINE|B4	3701.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	2.72568045711263	2.71654737904311	3.0440876287022	2.75210284938287	2.96986211808695	3.09674718603897	3.03184206086082	2.9847459014653	0.910385725569631	0.129722416433658	0.400906041293221
Merged-chr19-53464843-4	chr19	53464749	53464949	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028427)	promoter-TSS (NR_028427)	-53.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	6.45634419471917	6.72546166554899	6.57371848785469	6.71472871922545	5.45558307937362	5.37219289488076	5.34338765097356	4.95891621380479	-2.1235338623098	4.73239592737332e-15	7.74361401642541e-13
Merged-chr8-24422265-4	chr8	24422140	24422340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16706.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	5.43458978089067	5.2826712858418	5.15890089257233	5.63529234158643	5.20219676285751	5.30114400873155	5.32329053553691	5.51185484481967	-0.132608260462053	0.658440840824213	0.857885826893644
Merged-chr7-109752681-2	chr7	109752587	109752787	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_020050)	promoter-TSS (NM_020050)	-424.0	NM_020050	56786.0	Mm.240668	NM_020050	ENSMUSG00000031021	Tmem9b	2310004K06Rik|AW539847|D7H11orf15|ICRFP703B1614Q5.3	TMEM9 domain family, member B	protein-coding	5.2887172884358	5.19791744069664	5.26039561049368	5.04143069962473	5.0755239823478	4.9818935877257	5.11090523373834	5.39583187779344	-0.0738666549004244	0.809519207797873	0.926483168392662
Merged-chr16-35983979-4	chr16	35983880	35984080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008465, intron 1 of 13)	CpG	617.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	6.06034651652293	6.43340858068826	6.38447617239842	6.30205338422228	6.540376438169	6.32797844660959	6.80716710339127	6.41502671705492	0.344231831555069	0.137625151557375	0.412689921333883
Merged-chr13-23488905-4	chr13	23488816	23489016	+	926.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175938)	promoter-TSS (NM_175938)	-59.0	NM_001289614	238555.0	Mm.129668	NM_175938	ENSMUSG00000053216	Btn2a2	Btn2|D030063K05	butyrophilin, subfamily 2, member A2	protein-coding	4.34634994690836	4.56111472026159	4.2509182794835	4.59706973142552	4.81477177383857	4.27400784606749	4.75246119067284	4.38980622286069	0.290127817593598	0.460559244838609	0.742687499720882
Merged-chr5-140350135-4	chr5	140350018	140350218	+	931.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 7 of 10)	intron (NM_172277, intron 7 of 10)	18162.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	5.01039828497192	4.81043838595089	4.94644793529668	5.51006584274236	4.47137978344777	4.55252456673404	4.62656317746066	4.46574091526137	-1.23174362660856	0.00094726119231493	0.0128845985873847
Merged-chr2-153275156-4	chr2	153275048	153275248	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-16268.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	5.29574015886363	5.21583904363464	5.8834926266818	5.79727363371068	5.17560757231281	5.12210319660586	5.33074055152438	5.16204090796765	-0.69456905650418	0.029023646477112	0.163815251177096
Merged-chr12-85304912-4	chr12	85304810	85305010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145138, intron 20 of 21)	intron (NM_145138, intron 20 of 21)	16319.0	NM_172414	72350.0	Mm.158810	NM_172414	ENSMUSG00000045064	Zc2hc1c	2810002I04Rik|AV046379|Fam164c	zinc finger, C2HC-type containing 1C	protein-coding	5.80645011649563	5.88769900455689	5.85488945092627	5.89294539183299	6.0178673125571	5.74668001637193	5.77804531333112	5.87377127727067	0.00633766592264761	0.979433212967997	0.99269129061727
Merged-chr3-142621351-4	chr3	142621257	142621457	+	984.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010260, intron 1 of 10)	Lx8|LINE|L1	694.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	6.1072539238304	6.65058193871628	6.06761346999006	5.99622105012765	5.80814616398908	6.22238167631895	5.8118221377586	5.4010705752307	-0.613757789108637	0.0405504829164425	0.203535915909277
Merged-chr3-10247325-2	chr3	10247225	10247425	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357159, intron 4 of 4)	intron (NM_001357159, intron 4 of 4)	6900.0	NM_001357161	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	3.4429365491226	3.21304209144472	3.77627216288616	3.08088955810544	3.25522399219738	3.25253593615376	3.62757772265157	3.26752381335384	-0.131703936330267	0.820068195500516	0.931130407049582
Merged-chr5-34519587-4	chr5	34519463	34519663	+	948.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5584.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	5.54722382219752	5.35927085481833	5.43975659313323	6.01844508145084	5.48544850972365	4.88451438127953	5.29480014187259	5.3780879641696	-0.607331430289213	0.0664041803144103	0.274680167100387
Merged-chr12-32818361-4	chr12	32818255	32818455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-1980.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	5.32107152520494	5.40501948645495	5.64895181972941	5.13322390441676	5.26145029872163	5.64256359416881	5.29560546051072	5.71483008769708	0.194664131978375	0.524222242187252	0.782789831107843
Merged-chr16-58556279-4	chr16	58556191	58556391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32038.0	NM_001357434	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	5.98735534328087	6.1754707618392	6.34511712950508	6.26279827600053	5.59061203821527	5.70218958179307	6.04127618728935	5.63687622952484	-0.720720898205265	0.00500140477697881	0.0475547676490215
Merged-chr17-27008495-4	chr17	27008408	27008608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20A|LTR|ERVK	-9527.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	5.1938323125341	5.30804120472991	5.2599279345257	5.59346116962333	5.1717080015332	5.23197305489335	5.61250503098756	5.51404305951158	0.0418399022696728	0.891299508063601	0.959325726463795
Merged-chr13-105300867-4	chr13	105300762	105300962	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6377.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	5.33630287779848	5.61045950541798	5.17633197992572	5.58808711816185	5.68035290953655	5.17267637383491	5.28045008099262	5.30295972121674	-0.111276861840145	0.717952930012929	0.887284861626708
Merged-chr19-5491459-4	chr19	5491364	5491564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007687, intron 1 of 3)	intron (NM_007687, intron 1 of 3)	1009.0	NM_007687	12631.0	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	6.53606215117696	7.02360637675837	6.83779006609674	6.42500583591629	6.6847394958424	6.91672155090296	6.5855747435727	6.70656531486678	0.010511867728536	0.964066706908168	0.987271661885542
Merged-chr16-76407067-3	chr16	76406965	76407165	+	927.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33238.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	3.87885266410131	3.86775861135196	4.16325691269156	4.59740967440699	3.71720388410613	4.00145857431707	3.86367911678365	3.82328868946637	-0.896740793538836	0.0637315666614436	0.268137438432137
Merged-chr11-88234210-4	chr11	88234113	88234313	+	795.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29825.0	NM_001291271	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	3.82078274325581	3.78373232606548	4.21649995829881	3.78977505814771	4.24326647245022	4.25433631828977	4.19713581953066	4.25557424005079	0.875494502399768	0.036443487837908	0.189884108434622
Merged-chr10-67187327-4	chr10	67187225	67187425	+	923.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242396, intron 1 of 24)	intron (NM_001242396, intron 1 of 24)	1575.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	4.31262149398916	4.25328455447952	4.31327829499373	4.30092974378003	4.5794105445853	4.44100723675589	4.46015272964611	4.26509974951704	0.360473021484541	0.333199571509675	0.644020579610427
Merged-chr2-146959504-5	chr2	146959438	146959638	+	971.213318	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033298, intron 12 of 13)	intron (NM_001033298, intron 12 of 13)	-53461.0	NM_001356403	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	4.15484673180091	4.10206797700652	3.90614106412778	3.88639934031325	4.13740209494856	3.97228255917938	4.3434064598023	4.39900553777154	0.550985651172574	0.186527737364555	0.484574539869033
Merged-chr7-125560733-4	chr7	125560659	125560859	+	789.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008700, intron 1 of 10)	PB1D9|SINE|Alu	8477.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	3.71961014055595	3.73383044573412	4.23805153256956	4.0073828248996	3.70438504378629	3.95279768648081	3.70594380783398	4.27318132223262	-0.0447240220335648	0.92632837768791	0.972925005097355
Merged-chr10-84919954-3	chr10	84919854	84920054	+	766.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013441, intron 1 of 8)	intron (NM_001013441, intron 1 of 8)	2341.0	NM_183172	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	4.08987242033612	3.83978470073368	4.00589489892725	3.81134949986913	3.86546529310141	3.77345983064739	3.69702257680649	3.46889207887189	-0.639176443010695	0.176723827729194	0.471902210906975
Merged-chr9-40765128-3	chr9	40765045	40765245	+	990.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 2 of 6)	B2_Mm2|SINE|B2	-36128.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.04824356013027	3.83641612337272	3.75605051486104	3.35936216843083	4.82020310209829	4.77195470961309	4.47082706506085	4.37210309083718	2.23669094521714	4.90039963211848e-07	1.82143887944941e-05
Merged-chr11-4189307-4	chr11	4189200	4189400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	2467.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	6.0171763609436	6.03506826588346	6.12031228175127	6.18439728954197	5.76773016732191	5.85693946592365	6.00848328058525	5.92594057357405	-0.333948186913626	0.161931683210321	0.450986986551208
Merged-chr2-43806144-4	chr2	43806022	43806222	+	780.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 2 of 14)	intron (NM_001301831, intron 2 of 14)	57298.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	3.65164849825459	4.06488601103132	3.71352066138735	3.89275262559424	4.06784760468328	4.05739933504382	4.34137873946976	4.16402497713606	0.830916609742562	0.0583985304387678	0.254021687319701
Merged-chr1-92676889-2	chr1	92676789	92676989	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28048.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	3.28201950789539	3.68340431486639	3.34162782067299	3.39271807600857	3.33145355373271	3.51231319829009	3.2097327979016	3.2808018838841	-0.346595806226071	0.516306026064662	0.778060818268087
Merged-chr11-46275506-4	chr11	46275408	46275608	+	882.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 8 of 30)	intron (NM_001252459, intron 8 of 30)	36850.0	NM_001252460	76884.0	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	4.37826301169866	4.30944153772493	4.28877034560261	4.15039596041311	4.65229362776662	4.15757845306199	4.66389616891291	4.61348632461753	0.628244524422375	0.101231117010163	0.349257412518365
Merged-chr10-105841259-4	chr10	105841147	105841347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025602)	promoter-TSS (NM_025602)	133.0	NM_001359642	216292.0	Mm.250875	NM_207522	ENSMUSG00000036009	Mettl25	-	methyltransferase like 25	protein-coding	8.04009133283348	8.07502066455319	8.67493698603392	8.16871676605702	7.8575712516686	8.17821041730206	8.08089486947525	8.10140672770132	-0.265651003244536	0.181506753693455	0.478215473095442
Merged-chr1-160792945-4	chr1	160792860	160793060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013862)	promoter-TSS (NM_013862)	-22.0	NM_013862	29809.0	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	6.26090941521867	6.32641061151512	6.83876021774462	6.44775951662681	5.33129871389517	5.4419520122067	5.76079524613769	5.67839827989753	-1.47213719641908	6.76091373276563e-08	3.0096002413041e-06
Merged-chr5-67822258-4	chr5	67822157	67822357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	25174.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	7.96247909861533	8.11864872122358	8.18624919521523	8.26694693321948	7.76773249883344	7.76268705796539	8.19867328262226	7.63478503700565	-0.365565078866364	0.0530951380517172	0.240303861599999
Merged-chr1-170136577-4	chr1	170136487	170136687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38377.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	5.09644795441814	5.31463165517926	5.35888250893188	5.63183300714375	5.20991833366775	5.27529762226603	5.52246460065301	5.59633325461536	0.038002653681396	0.901618426559297	0.963484657055261
Merged-chr3-51719210-4	chr3	51719100	51719300	+	941.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	58021.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	4.19834391656254	3.90207987323564	3.7922368132182	4.5487923044482	4.24543048570872	3.85175767488597	3.99475001730341	4.35950316904687	-0.0761662986617375	0.874752174006963	0.952925927223413
Merged-chr12-71864717-4	chr12	71864614	71864814	+	861.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026102, intron 1 of 25)	intron (NM_026102, intron 1 of 25)	-24829.0	NM_001286452	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	4.51927003252769	4.97747144012572	4.9038971460984	4.62712646549425	4.4835434914169	4.55917566661852	5.06271045234549	4.64465181270152	-0.130482259523611	0.727021967676016	0.89133085313418
Merged-chr10-41831089-2	chr10	41830989	41831189	+	896.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	20515.0	NM_001162908	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	3.29359333060614	3.46758648726936	3.09937882619349	3.36359262822128	3.67816588953609	3.34365245834091	3.39625371426636	3.51329067505488	0.607565516902581	0.251511593747104	0.56287087730158
Merged-chr11-61564824-3	chr11	61564734	61564934	+	969.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252189, intron 1 of 8)	intron (NM_001252189, intron 1 of 8)	14853.0	NM_010148	13855.0	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	4.41026222429909	4.10649898345338	4.59136101702738	4.36579343456513	3.57263818749881	4.28111392239431	3.9865425601446	4.15121658553293	-0.927681801573234	0.0438399862171931	0.21326451469065
Merged-chr15-58244317-1	chr15	58244217	58244417	+	620.0	f0_balb.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-29425.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	3.33943540559186	3.52879506281444	3.4013842961908	3.51527713368068	3.63566457500866	3.6319719656194	3.65648612625905	3.62023518045056	0.581636838200785	0.227868645032359	0.536606308633569
Merged-chr11-22437701-4	chr11	22437592	22437792	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74591.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	6.47050018159973	6.37006162916094	5.97378451744611	6.50948658502313	5.15069080678872	5.44500497988617	5.1964123535716	4.97296413941434	-1.93115927373511	1.37530157256381e-11	1.21574354065989e-09
Merged-chr1-82771441-4	chr1	82771343	82771543	+	859.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2987.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	4.13289935377317	4.24282027573962	4.27231016109689	5.01368805698762	4.17893966200095	3.98716022502972	3.90697346810076	4.08135073547793	-1.08742454908251	0.0212261187473101	0.133173548375036
Merged-chr6-29273413-2	chr6	29273313	29273513	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023516, intron 1 of 1)	intron (NM_023516, intron 1 of 1)	787.0	NM_023516	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	2.87961057001523	2.88696643688676	2.99738988647468	2.86046261087429	2.59969012508797	2.71267457711286	2.98534291908467	2.93845398652527	-0.411761644565051	0.517684956737519	0.779000835812859
Merged-chr10-85183874-4	chr10	85183778	85183978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007771, intron 1 of 12)	intron (NM_007771, intron 1 of 12)	1176.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	5.84415396724703	5.50450997850248	5.70446109840894	5.28689385868718	5.72304110449817	5.66535078811185	5.74736075472724	5.86298083602712	0.287504689239935	0.301896721418797	0.614138517687012
Merged-chr14-54863631-4	chr14	54863547	54863747	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177705, intron 1 of 1)	intron (NM_001177705, intron 1 of 1)	511.0	NM_001177705	239099.0	Mm.280994	NM_183174	ENSMUSG00000057156	Homez	mKIAA1443	homeodomain leucine zipper-encoding gene	protein-coding	4.51826883413908	4.96112761014281	4.59463917638314	3.74849948221748	4.31941771995237	4.18386641883149	4.33290749844913	4.21002190250716	-0.606842900808834	0.20284427469327	0.505367754389162
Merged-chr15-101078923-4	chr15	101078873	101079073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-24574.0	NM_001214911	668225.0	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	6.56873891403459	6.42389503070126	6.351905635587	6.71931665046521	6.3099366408541	6.24389357510325	6.28245572285727	6.452629784783	-0.314643129579188	0.159752067705728	0.447447858467163
Merged-chr1-71988290-4	chr1	71988183	71988383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040454, intron 1 of 2)	intron (NR_040454, intron 1 of 2)	16912.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	6.80231028658455	7.29720574293826	7.10518735085423	7.31659325973181	7.16459032354605	7.08046300087716	6.98537252186493	6.79867800628636	-0.190061420195945	0.371272856127075	0.675325325213867
Merged-chr4-63548699-4	chr4	63548594	63548794	+	893.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024173, intron 2 of 2)	intron (NM_024173, intron 2 of 2)	3929.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	3.91210351587331	3.92504008023076	4.70116457880794	4.21612331765881	4.27024615750367	4.69582015220965	4.38756743653999	4.36339614174211	0.492051456456061	0.266253045423372	0.578022555286857
Merged-chr4-141506563-4	chr4	141506459	141506659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	32038.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	7.26546925818279	7.31963205664628	7.02904448451981	6.98027806816653	6.86559110390757	7.21830565157288	7.15634313490675	6.94703590557727	-0.14077393144477	0.490254274346767	0.76216937207179
Merged-chr8-125113485-6	chr8	125113382	125113582	+	863.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 3 of 12)	intron (NM_174854, intron 3 of 12)	59287.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	3.46291660065742	3.99413536485862	3.40398641285569	3.45635247244403	3.53183121332787	3.45599666139828	3.39185515196569	3.67479988030591	-0.270520712963337	0.608586979589024	0.830699381505368
Merged-chr10-41888581-4	chr10	41888484	41888684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013370, intron 1 of 9)	intron (NM_001013370, intron 1 of 9)	1145.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	5.14023790369198	4.93449481183359	4.94368499643415	5.0168196953837	4.97977987163169	5.15180462393134	5.05380763266254	4.70708160311212	-0.0562933857730615	0.859858080686689	0.947046673555501
Merged-chr1-165614980-4	chr1	165614868	165615068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	19573.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	7.08935818258174	6.61842208318704	7.20039975647676	7.24629069052636	6.60898214522754	6.92709989806177	6.87032989807906	6.9397338124084	-0.320381229247215	0.15690634895685	0.443068870250313
Merged-chr14-16256369-4	chr14	16256262	16256462	+	919.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021504, intron 2 of 11)	MTEb|LTR|ERVL-MaLR	-6554.0	NM_027695	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	4.5889316578671	4.35742101367514	4.77718126029904	4.67056325033633	4.64085927549621	4.7622302726468	4.48589621531542	4.66496956564783	0.068317841281874	0.847968774880914	0.942575428077716
Merged-chr3-53463697-4	chr3	53463592	53463792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172501)	promoter-TSS (NM_172501)	-125.0	NM_173382	212127.0	Mm.491292	NM_173382	ENSMUSG00000049504	Proser1	2810046L04Rik|9330161F11	proline and serine rich 1	protein-coding	7.58961840499284	7.79922479977824	7.68615750558177	7.54550633574423	7.71510943562353	8.0562596311306	7.83372591042478	7.75376069005151	0.244223042405131	0.165359075816452	0.456002323608105
Merged-chr11-75738095-4	chr11	75737982	75738182	+	922.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009536, intron 1 of 5)	intron (NM_009536, intron 1 of 5)	5195.0	NM_009536	22627.0	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	4.8068024500609	4.65662266532776	4.53732916079882	4.72790012642165	4.97952916095196	4.6248616456433	4.47366951736135	4.5767086833628	0.0110897762911509	0.975516618032168	0.991324270933399
Merged-chr12-29698217-4	chr12	29698119	29698319	+	849.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361657, intron 3 of 24)	intron (NM_001361657, intron 3 of 24)	-11774.0	NR_046080	328075.0	Mm.447832	NR_046080	ENSMUSG00000112663	C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	3.36084109297894	3.32583365632423	3.83130835260028	3.78093971836309	4.05774451131654	3.73578518030561	4.15506307142681	3.87744273774743	1.04714982412058	0.0415758135689107	0.206526961687591
Merged-chr19-24476673-2	chr19	24476573	24476773	+	846.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_026520, exon 1 of 1)	exon (NM_026520, exon 1 of 1)	801.0	NM_026520	68034.0	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|Gm9849	family with sequence similarity 122, member A	protein-coding	3.51702761097246	3.33723277675221	3.88800649244198	3.19080380058591	3.56191753216655	3.33002726686614	3.44892935319571	3.46063783004283	-0.14750025712531	0.788470040841452	0.91812687233996
Merged-chr3-116425101-4	chr3	116425009	116425209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamSINE1|SINE|tRNA	-1077.0	NM_001173553	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	6.01808799231226	6.59370471450501	6.27349594142606	6.57850380253545	6.32434246890302	6.67620545930714	6.03428224842789	6.34352872058715	-0.0578716576501898	0.823943731541968	0.932476232435989
Merged-chr17-6963160-4	chr17	6963063	6963263	+	928.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2007.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	4.33559549060531	4.07349415146904	4.46935810685001	4.32518207470392	4.58955297608723	4.76086511872506	4.60567128026958	4.69690041284403	0.800377806943107	0.0285217930251867	0.16204922619251
Merged-chr18-52457889-2	chr18	52457778	52457978	+	627.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7815.0	NM_026040	67222.0	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding	3.39032400820235	3.54545541863541	3.13657833193949	3.33059033041389	3.69223461776128	3.38206137073583	3.5387585102977	3.55146184595954	0.643660633203687	0.212533922615107	0.517487068679264
Merged-chr6-135907714-4	chr6	135907600	135907800	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008171, intron 5 of 14)	intron (NM_008171, intron 5 of 14)	248787.0	NR_126088	75024.0	Mm.399147	NR_126088	ENSMUSG00000107396	4930425L21Rik	4930473P14Rik	RIKEN cDNA 4930425L21 gene	ncRNA	4.15331824347657	4.26114423915121	3.91199400445272	4.10297083936476	4.81026839997831	4.79499615201695	5.07674347288781	5.12602508787395	1.85206819101365	7.72313464546169e-07	2.7638260479101e-05
Merged-chr2-94436237-3	chr2	94436133	94436333	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007466, intron 1 of 13)	(CA)n|Simple_repeat|Simple_repeat	1953.0	NM_007466	11800.0	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	4.50413909860183	3.84741411600738	4.19321571922783	3.87185895446439	3.80947217112112	4.12809729188795	4.21714734458407	4.23394897434044	-0.0475602798389171	0.917687238106054	0.969715853936325
Merged-chr11-46287008-4	chr11	46286918	46287118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 3 of 30)	intron (NM_001252459, intron 3 of 30)	25340.0	NM_001252460	76884.0	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	6.5615332533416	6.18859825510415	6.82169314815369	7.06318880988029	6.27359467395461	6.56890742074328	6.49687064741453	6.33104945987982	-0.426395615604246	0.102822483258754	0.35216269069915
Merged-chr14-73445275-1	chr14	73445175	73445375	+	948.3333130000001	f0_balb.idr	Intergenic	Intergenic	-59986.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	3.76741688506524	4.24414915868164	4.58096977718361	4.067312696242	4.21660981630415	4.06741878344771	4.03221706414087	4.3991605929762	-0.0110355052502108	0.980437094570476	0.99281244474172
Merged-chr14-45687355-4	chr14	45687251	45687451	+	790.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29208.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	4.26720175936522	3.72891942380097	3.46278591767183	3.98440625618432	4.03781095730751	3.94619789733702	3.95774272291437	3.87486676695954	0.165283073338851	0.733345136013568	0.894448261374724
Merged-chr7-55868487-4	chr7	55868393	55868593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	Lx10|LINE|L1	26422.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	7.30297603830095	7.60548243934763	7.36671552398213	7.42743023382634	7.38411426890538	7.68741511399328	7.26784850964558	7.39169711874501	0.00729286036088936	0.969148331172425	0.988873837789174
Merged-chr13-9354018-4	chr13	9353916	9354116	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	77491.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	4.35106435315026	4.44061901728546	4.01438538836427	4.51238526795124	3.91323341601831	4.67979341655071	3.94293896814324	4.43102031813789	-0.17392131944226	0.703390193726096	0.880690314212345
Merged-chr2-70091950-4	chr2	70091840	70092040	+	943.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177376, intron 2 of 34)	RLTR14|LTR|ERV1	52814.0	NM_177376	329421.0	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	5.36626417286919	5.71266423651066	5.66967533521006	5.53229247275127	4.79169465017042	4.94353680398011	5.09085593994744	5.04108545228105	-1.13557795223902	0.000176353408689769	0.00327318364462296
Merged-chr11-117200898-4	chr11	117200781	117200981	+	980.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 1 of 11)	intron (NM_001113486, intron 1 of 11)	1220.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	5.36920892290579	5.66026712825887	5.51300915159815	5.60944192942824	5.50126577064192	5.31784237708464	5.00188016955901	5.75358768889754	-0.211504030563001	0.486974952082682	0.760490359909021
Merged-chr10-89454005-3	chr10	89453894	89454094	+	750.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163504)	TTS (NM_001163504)	-10027.0	NM_001033331	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	3.9693537767881	4.13926376496823	4.14547865295608	4.01376741891741	3.66517835100445	3.77001617600297	3.57747575513577	3.91964763432255	-0.956270766872422	0.0348683754122363	0.184862410839365
Merged-chr14-104523214-2	chr14	104523114	104523314	+	610.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026047)	promoter-TSS (NM_026047)	-548.0	NM_026047	72486.0	Mm.291811	NM_026047	ENSMUSG00000022120	Rnf219	2610206B13Rik|2810449K13Rik|AI451544	ring finger protein 219	protein-coding	3.61771283595815	3.33689789330663	3.3445728950924	3.26315278128348	3.58568843499215	3.57677431573454	3.6504263387263	3.34290830840099	0.529631189999542	0.296874701306138	0.608864299091501
Merged-chr8-119807951-4	chr8	119807839	119808039	+	837.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29523.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	3.87510184261988	3.77246454217348	3.9252843059042	4.00361307066859	3.72990469183155	3.83320711667991	3.95587296269366	4.14520166259078	0.046672500201858	0.916590396277992	0.969089134718762
Merged-chr19-46979124-4	chr19	46979010	46979210	+	956.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164363, intron 1 of 17)	RSINE1|SINE|B4	-9543.0	NM_001164365	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	4.94069971984105	5.43928852749322	5.2921257390058	5.3499023368782	4.86774183895464	4.64587767365804	4.91790012689343	5.00950392283548	-0.78661671244355	0.0158333256339332	0.108964840733191
Merged-chr8-95488891-4	chr8	95488804	95489004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009974)	promoter-TSS (NM_009974)	-84.0	NM_009974	13000.0	Mm.51136	NM_009974	ENSMUSG00000046707	Csnk2a2	1110035J23Rik|C77789|CK2	casein kinase 2, alpha prime polypeptide	protein-coding	7.12669945003486	6.68293588779595	6.3969561192975	6.77296333128479	6.96021502359403	6.94856934514775	7.18765947922963	7.20853017771667	0.430833075242444	0.0557648075714602	0.247214950057858
Merged-chr11-70525271-4	chr11	70525176	70525376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008946)	promoter-TSS (NM_008946)	-81.0	NM_008946	19175.0	Mm.98	NM_008946	ENSMUSG00000018286	Psmb6	Lmp19|Mpnd	proteasome (prosome, macropain) subunit, beta type 6	protein-coding	7.50013542743156	7.55638295872758	7.0611782998181	6.70221088866719	7.45262448898879	7.42467430724886	7.16738066265	7.19845580351264	0.104261781424381	0.668881328468683	0.863339192066389
Merged-chr8-18935679-4	chr8	18935589	18935789	+	866.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176951, intron 6 of 6)	intron (NM_176951, intron 6 of 6)	15182.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	4.43642932464179	4.13089878616482	4.59120406553588	4.40276348410618	3.95255369033849	4.48198189691565	4.24316828059239	4.62378714715212	-0.133867552147713	0.750196630441928	0.901631871508611
Merged-chr12-40583943-4	chr12	40583844	40584044	+	928.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	ORR1D2|LTR|ERVL-MaLR	137891.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.98574309581197	4.73163759715192	5.19811498815058	5.03912540890889	4.82265129739342	4.69405039226028	4.89523417718384	4.64620294176055	-0.458969614018947	0.171881555903217	0.465124394984604
Merged-chr1-180330405-4	chr1	180330302	180330502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081175)	promoter-TSS (NM_001081175)	-74.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	7.01728834350247	7.03733656455012	6.95573922912291	6.99653849919017	6.82125421021072	7.19483747474035	6.85476065247768	6.92482232109441	-0.0727754719897027	0.709542333338736	0.883620420956218
Merged-chr2-11664107-4	chr2	11663998	11664198	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008367, intron 1 of 7)	intron (NM_008367, intron 1 of 7)	21306.0	NM_008367	16184.0	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	4.31045043355391	4.53210608218097	3.90086344526176	4.04929355344623	4.00341080230482	4.34823585961675	4.45494998833407	4.7181609018762	0.43834602292954	0.323031128652709	0.63451078156203
Merged-chr1-131260539-2	chr1	131260439	131260639	+	996.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019777, intron 16 of 21)	intron (NM_019777, intron 16 of 21)	-15361.0	NM_018750	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	2.53884784467875	2.41252199529356	2.60890645329975	2.71552852369138	2.69513046645073	2.84528792794823	2.84432741577864	2.79703906907217	1.02243090532803	0.128936045781168	0.399475006644806
Merged-chr5-54045744-4	chr5	54045654	54045854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	47231.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	6.3443817460336	6.15339263281801	6.07854186592022	6.47222342530852	5.73169744809544	5.89195461631564	6.34665923897167	6.17609581379951	-0.353872908333445	0.178315424463465	0.474089107944307
Merged-chr17-17899389-2	chr17	17899293	17899493	+	832.450012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11569.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	3.38582576328641	3.44637208398302	3.268704511988	3.05269336531853	3.34997361278492	3.18203026481631	3.57749296535702	3.63809609220321	0.562843674035256	0.302880678289689	0.615401455811309
Merged-chr14-52019033-4	chr14	52018941	52019141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033805, intron 6 of 6)	intron (NM_001033805, intron 6 of 6)	672.0	NM_001253694	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	4.75317831899212	4.90891772510337	4.57687561107852	4.96951994917083	5.23486792632607	5.12035652377823	5.23437421432445	5.17081534828549	0.701904835792536	0.0283175493522994	0.161276617186085
Merged-chr3-149086294-4	chr3	149086189	149086389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-131654.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	6.68390517724998	6.28201294110587	6.59404825579357	6.86151837353352	6.46595467482937	6.52929762286314	6.56038677465727	6.70923208533683	-0.0985925787231985	0.667552774331027	0.862535454941396
Merged-chr10-79892904-4	chr10	79892821	79893021	+	891.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001329541)	TTS (NM_001329541)	2068.0	NM_001291915	11537.0	Mm.4407	NM_013459	ENSMUSG00000061780	Cfd	Adn|DF	complement factor D (adipsin)	protein-coding	4.09032071533564	4.30215430221836	3.93563057912914	3.90905665243245	4.53269623466319	4.44259114906088	4.07344083534827	3.98717370358397	0.561588541028296	0.19465253552018	0.495128214479895
Merged-chr5-31093496-4	chr5	31093413	31093613	+	835.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011773)	promoter-TSS (NM_011773)	14.0	NM_011773	22784.0	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	4.15296571931261	3.85555212350556	4.2412556613092	3.88486379599744	4.24501765592058	4.2794375691409	4.26305759577098	3.95577865558733	0.421342969619967	0.317575977723773	0.629525367799507
Merged-chr6-31413092-3	chr6	31412985	31413185	+	868.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 1 of 17)	intron (NM_013791, intron 1 of 17)	14257.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	3.4242621748544	3.34396777110796	3.424738125881	3.66548978338149	3.21117619606003	3.30433038864604	3.05219137241928	3.31260802677541	-0.94221153307257	0.0860371770552723	0.319609635489652
Merged-chr2-21676807-4	chr2	21676700	21676900	+	937.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004761, intron 5 of 10)	intron (NM_001004761, intron 5 of 10)	309233.0	NM_001004761	241263.0	Mm.166647	NM_175706	ENSMUSG00000045967	Gpr158	5330427M13Rik|mKIAA1136	G protein-coupled receptor 158	protein-coding	3.51962513423477	3.71821099347917	4.05253733280919	4.05084231709635	4.11056651600831	3.76303946304739	4.03434489516415	3.86261605007444	0.249811206060854	0.601291229864632	0.827071740947179
Merged-chr3-27863526-4	chr3	27863400	27863600	+	990.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32868.0	NM_001164437	208613.0	Mm.59189	NM_001164437	ENSMUSG00000043164	Tmem212	E030011K20Rik|Gm564	transmembrane protein 212	protein-coding	6.27590022345249	6.45316739278222	6.08320168837975	5.94672738965226	6.09375889431806	6.33963250951794	6.20849843165059	5.4409656957033	-0.208843924009747	0.471199755815292	0.749734937523649
Merged-chr13-64129353-4	chr13	64129255	64129455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001321)	promoter-TSS (NM_001001321)	-25.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	5.7904710177083	5.60909542444281	5.83986604912259	6.1032404533769	5.84403855143284	5.86554638585528	6.13995095711565	5.83571910696766	0.0961498736072488	0.717377777616719	0.886969736012834
Merged-chr2-3332627-4	chr2	3332531	3332731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013376)	promoter-TSS (NM_001013376)	-3.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	8.42760281733254	8.59642964657181	8.23944675555952	8.06014690220943	8.80110643227399	8.68700080069828	8.4453126403111	8.47909007630716	0.343549424970077	0.0630569453730524	0.266338138779284
Merged-chr15-80254407-4	chr15	80254324	80254524	+	799.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287180)	promoter-TSS (NM_001287180)	-760.0	NM_001287180	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	3.27892446486286	3.34650780381495	3.34417038317203	3.61227971824309	3.76221536730741	3.52057884601391	3.70985338927577	3.81465039687188	0.918879565933246	0.0743320587948337	0.293854082413028
Merged-chr13-14630230-4	chr13	14630140	14630340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001104646)	promoter-TSS (NM_001104646)	-5.0	NM_001104646	105351.0	Mm.41450	NM_134067	ENSMUSG00000039182	AW209491	-	expressed sequence AW209491	protein-coding	6.88375892855604	6.76165909954358	6.97492220164596	7.30370597937007	6.74052160761845	6.93586542786452	6.82321900611541	6.52908460969987	-0.347974279064041	0.12087877947165	0.385007066500925
Merged-chr16-10993162-4	chr16	10993056	10993256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019980)	promoter-TSS (NM_019980)	-35.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	8.33087483086957	8.50879025129655	8.68361357324057	8.3682995371528	8.58103556712407	8.53723123210256	8.82129045333838	8.50482446573557	0.176934798128823	0.286457214424745	0.598099623064415
Merged-chr2-119970814-3	chr2	119970742	119970942	+	875.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1857.0	NM_001355293	26390.0	Mm.330501	NM_011941	ENSMUSG00000033902	Mapkbp1	2810483F24Rik|AW123212|JNKBP-1|Jnkbp1|mKIAA0596	mitogen-activated protein kinase binding protein 1	protein-coding	3.25541782736658	3.33070411617684	3.07110946473261	3.34907710030771	3.31072615620223	3.24494196915063	3.29922794296315	3.25415691580418	0.0553793025566166	0.917667756778573	0.969715853936325
Merged-chr10-77607469-4	chr10	77607322	77607522	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301671, intron 1 of 3)	B1_Mur4|SINE|Alu	824.0	NM_001301671	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	4.2381567661447	4.21823694959821	4.32574010182222	4.07196737655171	4.42089450155113	4.05929186792709	4.22012360230954	4.40421439875015	0.21301511289653	0.592201211352795	0.822002535547594
Merged-chr19-34270441-4	chr19	34270363	34270563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15090.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	5.07755254350772	5.21716523902912	4.92719558723245	4.83140026820938	5.54081521215269	5.79324765443781	5.39364478791576	5.33265286984711	0.936860838122387	0.00198276970971548	0.0232353581112674
Merged-chr5-104955441-4	chr5	104955340	104955540	+	762.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030239, intron 10 of 15)	intron (NM_030239, intron 10 of 15)	27277.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	3.4991424439456	3.71863661912173	3.80426358915132	2.96438216239186	3.67698485553505	3.8808124686336	3.42791143133208	3.17719534461261	0.0862951309618524	0.887417285116436	0.957799052224803
Merged-chr13-63642760-4	chr13	63642662	63642862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69302.0	NM_001328514	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	4.23565718580896	4.65945889460408	4.40194476268054	4.70389498180776	5.05137084956192	5.15795116253873	5.37912913349062	5.3545559256917	1.39466026067027	0.000103820877948761	0.00209403974823316
Merged-chr9-90021626-4	chr9	90021520	90021720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357743, intron 26 of 26)	intron (NM_001357743, intron 26 of 26)	-32647.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	5.90744227351748	5.62905921866906	5.28570764961464	5.95073651772393	5.92836152571084	5.6861553779267	5.74379431752156	5.59036320668165	0.0271366340200376	0.92520953216841	0.97241738811813
Merged-chr1-180764078-4	chr1	180763987	180764187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38044.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	5.89507266842067	5.59657139600265	5.62573741959826	5.91667572567083	5.73379955315332	6.15462706767293	5.70183816643702	5.70134965243068	0.0895542618979678	0.741323671806717	0.898139463026673
Merged-chr4-42961756-4	chr4	42961645	42961845	+	676.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-8201.0	NM_026088	67317.0	Mm.478018	NM_026088	ENSMUSG00000028451	1700022I11Rik	-	RIKEN cDNA 1700022I11 gene	protein-coding	3.59366501558293	3.59398646518235	3.42439908465911	3.45583047370766	3.86666791828265	3.76380013779851	3.47051473288679	3.42270066350924	0.432903149748724	0.384389928178916	0.685951673034199
Merged-chr7-28339514-4	chr7	28339412	28339612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013676)	promoter-TSS (NM_013676)	-793.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	5.55683194888706	5.55189949446035	5.72614520973253	5.62601277615248	6.18664991402524	6.30240614108977	6.11586173806572	6.19834568143342	0.928015910556852	9.96213235310849e-05	0.00202367185719723
Merged-chr4-3647752-4	chr4	3647631	3647831	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8775.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	4.83756678811045	4.36064562276749	5.01148337068404	5.05189309834419	4.69869825156615	4.48245885145912	5.19323103873237	5.24306998672113	0.186746319773463	0.640456816911513	0.848189720270798
Merged-chr15-103393746-4	chr15	103393656	103393856	+	983.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26965.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	5.16872137366882	5.84339674355779	5.482727070944	5.24555909260471	5.34834119304825	5.81235564362846	4.99585736650026	5.77431464970033	0.10305727344685	0.764307947566884	0.907573451443258
Merged-chr2-75734360-4	chr2	75734256	75734456	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29693.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	6.29051426822381	6.46802383716436	5.54678223609134	5.79826345788128	6.25226256868724	5.99882631022558	5.81633559443641	5.48027634483398	-0.236021224620101	0.467313145212914	0.746968519290045
Merged-chr9-100382667-3	chr9	100382567	100382767	+	853.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103806.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	3.47152807932154	3.8660315692987	3.47195365715932	3.85847597476203	3.70086768959702	3.45948087703926	3.94698355522548	3.34440008400223	-0.161645705092744	0.762367552849784	0.906928612037859
Merged-chr19-10846261-4	chr19	10846113	10846313	+	832.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023044, intron 1 of 7)	intron (NM_023044, intron 1 of 7)	3669.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	3.98085244480179	3.85718318809181	3.78227605457721	3.30264544103515	3.83080925765662	3.84875412982311	4.00836915561525	4.15099891855361	0.631683719497855	0.200152674274989	0.502173676496984
Merged-chr2-160171285-4	chr2	160171163	160171363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	154610.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	6.79655379102172	6.71057534252426	7.24378489826311	7.0206837208097	6.62595405403549	6.28289816020245	7.02796516528932	6.74989149268122	-0.366266661963217	0.13208213223568	0.404590699763458
Merged-chr13-111792287-1	chr13	111792187	111792387	+	636.0	f0_balb.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	16706.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	2.65918074867675	2.57089957422903	2.83034765211422	2.80008354963334	2.4379946829339	2.41247316473496	2.45561505783878	2.53026859208798	-1.46815719032792	0.041117043078445	0.205135628322747
Merged-chr1-35993196-3	chr1	35993123	35993323	+	825.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75177.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	3.04672614247674	2.88553140488533	3.2050294814191	2.87136508148429	2.80387075030877	2.76329121618421	2.8572614542147	2.92829305432788	-0.731289595813376	0.239345824135672	0.549703033561985
Merged-chr15-8682760-3	chr15	8682674	8682874	+	703.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 3 of 9)	intron (NM_148938, intron 3 of 9)	28033.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	3.47453184227601	3.49921345096076	3.53187191972212	3.26431763247071	3.72591548442434	3.64864382667478	3.62351156107754	3.73496131902195	0.821946233954751	0.0872741334874328	0.322237034313828
Merged-chr13-9504517-4	chr13	9504380	9504580	+	851.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 2 of 36)	intron (NM_001081426, intron 2 of 36)	227955.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	3.92600267198912	3.63820220635408	4.01172350393195	3.74860504949552	3.44445086913104	3.50259026408405	3.56000328925076	3.7847330168566	-0.800042117050705	0.102746721484831	0.352063201683377
Merged-chr6-38320788-4	chr6	38320675	38320875	+	889.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 7 of 8)	RLTR45|LTR|ERVK	-21516.0	NM_172467	209032.0	Mm.101389	NM_172467	ENSMUSG00000047749	Zc3hav1l	B130055L09Rik|E430016P22Rik	zinc finger CCCH-type, antiviral 1-like	protein-coding	4.23220000778415	4.371917151791	4.3715496589674	4.2417143237	4.33648261019903	4.78012353899324	4.00616432684217	4.77703273314372	0.475384002283439	0.252761773731163	0.564007170674244
Merged-chr7-31151047-4	chr7	31150948	31151148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153431, exon 1 of 19)	non-coding (NR_153431, exon 1 of 19)	123.0	NM_027898	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	6.34790246781783	6.73299397675054	6.74949886403998	6.29673433046909	6.86754453848371	6.88221450733241	7.02810790973585	6.67114878802875	0.472645813766469	0.0363188341677901	0.189540164031757
Merged-chr4-141016603-4	chr4	141016502	141016702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008546)	TTS (NM_008546)	5965.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	6.06312370325731	5.93303905961684	6.17733061155704	6.09440971839436	5.3669152721152	5.87748256497552	5.34611012056563	5.89120975271887	-0.706411146806329	0.0105679405718157	0.082164439318544
Merged-chr7-101383533-1	chr7	101383433	101383633	+	836.0	f0_balb.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	-1993.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	5.49610097559675	5.49076644783872	4.93807568725046	4.69838337813344	5.28727603436006	5.45182789277609	5.19117822387406	5.08163042400765	0.126986020367261	0.720341859868071	0.888262296532504
Merged-chr8-125569573-1	chr8	125569473	125569673	+	1000.0	f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	CpG	290.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	4.40632487242993	4.22315957516006	4.74922825681189	4.34803855535136	4.29893624681128	4.53741555859716	4.25064126507068	4.77875219159738	0.091761855463086	0.818565023423485	0.930447777104124
Merged-chr9-124090663-4	chr9	124090565	124090765	+	839.770874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11518.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	4.41483424849487	4.67119208330908	4.45960668150447	4.35601519947515	4.48007484969994	4.83001669222155	4.63770088829489	4.4567965795162	0.287053183391583	0.433314997469212	0.722830392839943
Merged-chr10-98708379-4	chr10	98708283	98708483	+	946.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-206259.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	4.48501609403087	4.37938634103888	4.57201180414176	4.99813884195256	4.9594423622378	4.82534705921059	4.66942946359707	4.39064537263868	0.173630436872124	0.662222797245678	0.859932634685043
Merged-chr5-92245691-3	chr5	92245585	92245785	+	809.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011148, intron 7 of 16)	intron (NM_011148, intron 7 of 16)	10593.0	NM_011148	19023.0	Mm.87155	NM_011148	ENSMUSG00000029410	Ppef2	-	protein phosphatase, EF hand calcium-binding domain 2	protein-coding	3.64825252421017	3.72909221863026	3.64876882926155	4.45118503673206	3.37293957048657	3.24300313709135	3.26774635054412	3.84615600569938	-1.4592630261127	0.0151907506658032	0.10584009804632
Merged-chr17-23985205-4	chr17	23985102	23985302	+	957.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-9972.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	4.65622951359606	4.29821437589755	4.65698136066663	4.53766758631855	4.95772800589885	5.26873897308051	4.89048148322204	4.65394050064195	0.866511342467886	0.0149128427673926	0.104394299305688
Merged-chr14-76703640-4	chr14	76703591	76703791	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26123.0	NR_015485	73272.0	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	4.07176600095268	4.31133813706147	4.50376596393982	4.24791663246537	4.90433514725264	4.54998327711903	4.67024150302167	4.5008486435697	0.873423491796312	0.0203875142002922	0.129672314651291
Merged-chr11-63060117-4	chr11	63060013	63060213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1546.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	5.77515686965989	6.16871421182798	6.04253065086496	5.75114310052396	6.10239827901443	5.71028075358884	5.53349972526176	5.64218842491165	-0.257329412755655	0.363470096767863	0.668574361907056
Merged-chr1-119457388-3	chr1	119457292	119457492	+	850.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35144.0	NM_008381	16324.0	Mm.3092	NM_008381	ENSMUSG00000037035	Inhbb	-	inhibin beta-B	protein-coding	3.38147813476459	3.45318641245645	3.49229024812743	3.4270587673885	3.45630242166652	3.30758274929944	3.31132005610455	3.63958695863392	-0.00227443500761812	0.99642805183902	0.998602617451138
Merged-chr16-21403575-5	chr16	21403428	21403628	+	894.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-19590.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	3.56991477376298	3.23422213823366	3.88861156865364	3.46954902558933	3.25641946250848	3.26010839273782	3.65356374886376	3.4034179002657	-0.518550389900151	0.348561989210875	0.656292768402628
Merged-chr14-46760464-4	chr14	46760363	46760563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028222)	promoter-TSS (NM_028222)	-78.0	NM_001360041	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	8.88077444359975	9.06057972343922	8.98474790411393	9.12192218498662	8.78705735724272	8.74909616866577	8.94473045491939	8.52612146795952	-0.320006011739068	0.0431416606987828	0.211349188035484
Merged-chr10-68283271-4	chr10	68283161	68283361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4535.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	6.83689873422868	6.84117908501084	6.57129968956563	6.60385294088003	6.7184953805838	6.79647890633912	6.84263811989443	6.516122841055	0.0142590538575719	0.945859762251985	0.980641198659378
Merged-chr17-7433299-2	chr17	7433199	7433399	+	889.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47994.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	3.49245058745223	3.37739492554789	3.94815604568887	3.63004341990418	3.72166987210074	3.5465341120505	3.79702395729279	3.85773174106602	0.331376367817179	0.503344514536518	0.770370061830951
Merged-chr1-170582537-4	chr1	170582437	170582637	+	933.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 1 of 9)	MTE2b|LTR|ERVL-MaLR	7312.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	4.91804614369893	5.00731469118097	4.71570152728697	5.44888111744969	5.24807173586733	4.93796212135975	5.19334354234336	5.21562196452666	0.149575483226623	0.668552318048134	0.863081932790702
Merged-chr13-89883772-3	chr13	89883688	89883888	+	843.255554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028012, intron 7 of 7)	intron (NM_028012, intron 7 of 7)	-141276.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	4.25388843305137	4.07774632850046	4.66251927932871	4.17928315991423	4.064416660473	4.29021347409653	4.04910922593709	4.01215642118295	-0.499820543635878	0.240061502744118	0.550476392636306
Merged-chr5-112240877-4	chr5	112240776	112240976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11642.0	NM_001312884	12959.0	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	5.62458774825938	5.6742118379822	5.54731920106148	5.54498539604078	5.51878049996854	5.31839727046836	5.54590985273884	5.57002734819642	-0.17218660751449	0.518339236977547	0.779459059723581
Merged-chr19-16133555-7	chr19	16133418	16133618	+	966.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	CpG	687.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	4.35300825731792	4.56816801619039	4.56737963589127	4.2813490193431	4.54685822326304	4.33419202257925	4.79281098390101	4.6406746830059	0.3409489858378	0.359321441013357	0.665266442591906
Merged-chr5-117164763-3	chr5	117164702	117164902	+	792.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	31214.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	3.66542560524326	3.95116845201269	4.08580181776789	3.96864388545691	2.78053197981977	2.99737421520793	2.95746850607891	3.19181638644214	-4.73350470534263	3.26326308974711e-07	1.25486657733717e-05
Merged-chr2-180116217-2	chr2	180116117	180116317	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3149.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	4.49640219146533	4.07176916229263	4.70854569528871	4.37194612593805	4.05406734529569	4.22024757826835	4.31379029727916	4.37350939257039	-0.445871058986014	0.27869758919221	0.590944493464575
Merged-chr8-11003331-1	chr8	11003231	11003431	+	593.0	f0_balb.idr	intron (NM_001081212, intron 1 of 1)	intron (NM_001081212, intron 1 of 1)	-4519.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	2.92755838614703	3.11822740165723	2.92796866164724	2.84843407332814	2.65543830151628	2.48097195503966	2.67318609804368	2.53749721534583	-1.886433931011	0.00870427296595137	0.0714274205030497
Merged-chr15-36152128-3	chr15	36152037	36152237	+	732.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081253, exon 4 of 5)	exon (NM_001081253, exon 4 of 5)	-11737.0	NM_001195748	626596.0	Mm.321798	NM_001195748	ENSMUSG00000037627	Rgs22	-	regulator of G-protein signalling 22	protein-coding	3.34836012794428	3.46550259258017	3.61304811400431	3.38836282040817	3.16989422944292	3.1291287832446	3.21509196531338	3.78794291700936	-0.347948748721779	0.541022942549756	0.793009827469438
Merged-chr11-102284829-4	chr11	102284710	102284910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302506)	promoter-TSS (NM_001302506)	-10.0	NM_001302506	72053.0	Mm.101274	NM_028076	ENSMUSG00000034757	Tmub2	2010008E23Rik	transmembrane and ubiquitin-like domain containing 2	protein-coding	7.68409261744742	8.01151791531468	7.25420316337569	7.00648662480275	7.76961962963316	7.77899223858267	7.4273509653318	7.68821185408576	0.172416269313179	0.487058510579148	0.760554104041268
Merged-chr1-35951245-3	chr1	35951147	35951347	+	904.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117153.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	3.82096925444567	4.02100153867095	3.87065172055468	4.04351208273629	3.81872566988036	3.77833521774661	3.70308577871208	3.54361247567792	-0.682949198525745	0.137420665574701	0.412339394027364
Merged-chr7-121983251-4	chr7	121983155	121983355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-1562.0	NM_001033318	233824.0	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	5.65898269924052	5.39502439366427	5.85499509265261	5.84185093898961	5.66920401591247	5.60859204624306	5.65724938128204	6.26850669255401	0.202155002520636	0.494895461485894	0.765380871135718
Merged-chr4-28176971-4	chr4	28176871	28177071	+	778.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SYNREP_MM|Satellite|Satellite	-636160.0	NM_001290434	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	4.60070028115352	4.12318569942694	4.64023086889215	4.87692686222007	4.61590153897746	4.69377109021545	4.22278244942159	4.78120724190096	-0.011909911362665	0.976884759769572	0.991779779141896
Merged-chr10-39456477-3	chr10	39456388	39456588	+	770.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	86689.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	3.52515441486786	3.24869552952456	3.47375715047203	3.80085497283987	3.41064755962218	3.07070781045498	3.56021619931178	3.17604470578504	-0.735034597580795	0.204962824778418	0.508488686518526
Merged-chr9-56465496-4	chr9	56465386	56465586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025812, intron 1 of 9)	intron (NM_025812, intron 1 of 9)	46867.0	NM_025812	66867.0	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	7.28196911270861	7.22332599781009	7.17495118723209	7.22066885024245	6.9639623754843	7.35173355466182	7.10470985284228	7.23597449337042	-0.0846653805751125	0.653344835435765	0.854997557892684
Merged-chr2-104595174-3	chr2	104595056	104595256	+	893.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037326, intron 1 of 1)	intron (NM_001037326, intron 1 of 1)	4672.0	NM_001037326	228410.0	Mm.259876	NM_145529	ENSMUSG00000027176	Cstf3	4732468G05Rik|C79532|CstF-77	cleavage stimulation factor, 3' pre-RNA, subunit 3	protein-coding	3.92493604613641	4.12365112339727	3.92549488941894	4.25851266783661	3.77521370512815	4.04695335921569	3.85858551884043	3.92323470467686	-0.499659588085519	0.256071796258937	0.567658114108658
Merged-chr2-26130193-4	chr2	26130115	26130315	+	793.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AmnSINE1|SINE|Deu	-7404.0	NM_026495	67991.0	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	3.88491528601919	4.0571144574686	3.65887427001944	3.57952493935224	4.07258784556669	3.95643086162167	3.51775315208271	4.64330104224287	0.809415365078842	0.12305622256117	0.388961271179071
Merged-chr8-120664732-4	chr8	120664604	120664804	+	862.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010926, intron 1 of 4)	intron (NM_010926, intron 1 of 4)	3408.0	NM_010926	18117.0	Mm.2136	NM_010926	ENSMUSG00000031819	Emc8	Cox4nb|Fam158b|Noc4	ER membrane protein complex subunit 8	protein-coding	3.95739307246046	4.08605791455295	4.14508256818554	4.14145773969046	3.88906035259022	3.79722035173115	4.20969757174741	4.00500316209404	-0.283896971308283	0.506879449652545	0.772593319178149
Merged-chr9-7603506-4	chr9	7603383	7603583	+	857.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24748.0	NM_013903	30800.0	Mm.390121	NM_013903	ENSMUSG00000018620	Mmp20	-	matrix metallopeptidase 20 (enamelysin)	protein-coding	4.66450716061782	4.12151146588501	4.29148375665137	4.52958362753237	4.74595987099211	4.46786727336619	4.67805516421401	4.3817316389067	0.360000866204	0.354643413232272	0.661322758140986
Merged-chr19-55570054-4	chr19	55569933	55570133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	132171.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	6.44777237852877	6.46762259645534	6.32973481025034	6.43244451650809	6.14102701047157	6.01229565712107	5.95184055119813	6.23261823185417	-0.499895527588024	0.0259800626443298	0.152401094359712
Merged-chr11-120727313-4	chr11	120727175	120727375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347608)	promoter-TSS (NM_001347608)	6.0	NM_026428	67880.0	Mm.231091	NM_026428	ENSMUSG00000039450	Dcxr	0610038K04Rik|1810027P18Rik|XR	dicarbonyl L-xylulose reductase	protein-coding	7.767282045894	7.58268304841355	7.50923612430608	7.66705378473197	7.43840994313817	7.5595560057536	7.49061239362086	7.52251326238647	-0.179935241712912	0.290482374531316	0.602682978306601
Merged-chr11-103267578-4	chr11	103267490	103267690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016896)	promoter-TSS (NM_016896)	-189.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	8.92056122709728	9.27155251323187	8.8199809905503	8.59513848358166	9.02870044529406	9.40022994001634	9.12385021567107	8.88202267865899	0.245881382775406	0.209512302314232	0.514046766302012
Merged-chr3-100531136-4	chr3	100531036	100531236	+	920.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57C2|LTR|ERV1	-41944.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	4.35103865222061	4.17964039831512	4.55301306054871	4.92280205867416	5.47915863409913	4.98510812078507	5.11937506109704	5.40751953330264	1.3920464341606	0.000488717865336967	0.00758961864335722
Merged-chr10-117721611-4	chr10	117721502	117721702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10844.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	5.96434565860341	6.05741497384757	5.55101203916656	5.76638663075277	6.39639385124477	6.34298203298234	5.77082954870361	5.86951774517562	0.44687108810276	0.112753488089793	0.371288758709039
Merged-chr1-186117361-4	chr1	186117259	186117459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146106)	promoter-TSS (NM_146106)	-49.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	8.75802606482845	8.58899961002551	8.4515757375329	8.90326280247069	8.79961594554269	8.83390482704685	8.93164247699729	8.70325545077226	0.157470582370188	0.340288836325182	0.649402624290582
Merged-chr4-155943739-4	chr4	155943614	155943814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039157)	promoter-TSS (NM_001039157)	-99.0	NM_001039158	140499.0	Mm.371673	NM_021402	ENSMUSG00000023286	Ube2j2	1200007B18Rik|2400008G19Rik|5730472G04Rik|AL022923|NCUBE-2|Ubc6|Ubc6p	ubiquitin-conjugating enzyme E2J 2	protein-coding	7.03143685241719	7.21684534351377	6.95560633113466	6.97551209553695	7.16533941682943	7.1970842888715	7.3513977232818	6.98979034986855	0.184784481578253	0.338574669513898	0.648064797414472
Merged-chr11-87987575-4	chr11	87987454	87987654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168472)	promoter-TSS (NM_001168472)	-21.0	NM_026556	68097.0	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	7.2610459886602	7.11334725338235	6.65650539277541	6.79876295337868	6.93351212046944	6.7162320755277	6.96033567669584	7.07452457843212	-0.0621547546176838	0.780049477894836	0.914292283412537
Merged-chr19-6292776-2	chr19	6292676	6292876	+	677.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	-13681.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	3.28155051320349	3.25771674198461	2.96765938108128	3.04511258318731	3.46851357842109	3.45081292429169	3.15382742040014	3.1634928876228	0.674275944074293	0.227067452503153	0.535725428645169
Merged-chr1-38987686-4	chr1	38987615	38987815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026850)	promoter-TSS (NM_026850)	-99.0	NM_026850	68833.0	Mm.28121	NM_026850	ENSMUSG00000026078	Pdcl3	1110061A19Rik|C80025|Viaf1	phosducin-like 3	protein-coding	8.10692060636112	8.17654307075324	7.57608824713474	8.00399064918382	8.18848260954505	8.17426223633269	8.22831571234978	8.10286485008761	0.238082562065182	0.192483543006729	0.492143615348106
Merged-chr19-44582847-4	chr19	44582745	44582945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19991.0	NM_176958	319594.0	Mm.145278	NM_176958	ENSMUSG00000036450	Hif1an	2310046M24Rik|A830014H24Rik|FIH|FIH1	hypoxia-inducible factor 1, alpha subunit inhibitor	protein-coding	6.08001027297285	6.11624028680488	5.95121873956362	6.09458852600865	5.96469043982473	5.93238761169473	6.38813737768567	5.82766381501753	-0.0301440111888896	0.904417081385816	0.964559678221358
Merged-chr12-55416289-4	chr12	55416170	55416370	+	966.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310583, intron 6 of 6)	intron (NM_001310583, intron 6 of 6)	17445.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	6.21800139774516	5.88713063357066	6.55370051996444	6.29701705665767	5.97952747625437	5.83146392482145	5.92511233377289	5.288960299744	-0.735817405003878	0.0111899263800251	0.0854417260034121
Merged-chr12-82446745-4	chr12	82446633	82446833	+	986.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 21 of 23)	ORR1A4|LTR|ERVL-MaLR	135384.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	4.96160257812302	4.99296168898315	5.06917363616851	5.48724377066059	5.33750237517056	4.89831975955288	5.29139252838786	5.31407773488607	0.106995650153952	0.748973764779328	0.901135963543404
Merged-chr8-126592846-4	chr8	126592753	126592953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164598, exon 1 of 2)	exon (NM_001164598, exon 1 of 2)	583.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	4.89231349867089	5.25076085855082	5.31122630692146	4.45418647653639	4.93130329562744	5.14277637766936	5.01230375939862	5.30746333856148	0.182732946524499	0.621967187149735	0.838130618172061
Merged-chr13-117025810-7	chr13	117025683	117025883	+	989.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081009)	promoter-TSS (NM_001081009)	-267.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	4.9994854708368	4.65248002980314	4.76947217121633	4.1655733656768	4.62558049959778	4.90543838619305	4.55318641484944	4.65289000312082	0.0493244248722571	0.901317547227491	0.963342914941175
Merged-chr14-20655041-5	chr14	20654954	20655154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021508, intron 2 of 5)	intron (NM_021508, intron 2 of 5)	1486.0	NM_021508	59011.0	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	5.59951720034312	5.80392750943612	5.81226456958759	5.20104184373421	5.90530283255435	6.43268306866727	6.13905100698233	6.07125772694965	0.861355478232913	0.0026041341441139	0.0286048864573894
Merged-chr2-156523209-4	chr2	156523107	156523307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291122, intron 14 of 20)	intron (NM_001291122, intron 14 of 20)	-24369.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	6.84581963250091	6.67259590130143	6.79135309824689	6.9812597719507	6.86962791581169	6.785217541949	6.63806285638831	7.07713434820801	0.0243840994518719	0.907502474424283	0.96572638861679
Merged-chr13-52530750-4	chr13	52530665	52530865	+	914.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024474)	promoter-TSS (NM_001024474)	71.0	NM_001024474	68203.0	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	4.59617458261891	4.48414305793474	4.4082970172222	4.32976304031288	4.15301080981984	3.9818645171117	4.21562194431992	4.32141438171858	-0.6751042260546	0.0882269703575466	0.324007198590435
Merged-chr16-23982625-4	chr16	23982507	23982707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	-1324.0	NM_001348026	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	5.25898229222981	5.43604739507219	5.04223862937806	4.89582334609284	4.69972836640903	5.21645798815958	5.14544735418038	4.69102177699957	-0.413488025945475	0.240626370497095	0.551185699479073
Merged-chr11-119235812-3	chr11	119235719	119235919	+	744.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175430, intron 3 of 18)	B3A|SINE|B2	7247.0	NM_175430	207607.0	Mm.189885	NM_175430	ENSMUSG00000039963	Ccdc40	B930008I02Rik	coiled-coil domain containing 40	protein-coding	3.01977674793397	3.36500503945394	2.95195644885288	3.25814740770461	3.29229123634036	3.19399122210614	3.30267353772619	3.20403397065465	0.308903478547134	0.586101967059719	0.818548677811555
Merged-chr2-28498638-4	chr2	28498531	28498731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139197, intron 3 of 6)	intron (NM_139197, intron 3 of 6)	1740.0	NM_139197	227671.0	Mm.484270	NM_139197	ENSMUSG00000026829	Gbgt1	Fgs|Fs	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1	protein-coding	6.26339179214627	6.57850010487208	5.71408345855584	5.35768646810337	6.4463132496419	6.50859380439675	5.65733127735841	5.62484430474945	0.0838441200905271	0.877179662496274	0.954005091093897
Merged-chr5-134394808-3	chr5	134394704	134394904	+	621.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081462, intron 9 of 29)	intron (NM_001081462, intron 9 of 29)	61458.0	NM_001081465	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	3.28998158291093	3.3516770401466	3.11373938011447	3.22147873763478	3.23208325654297	3.22287079224106	3.22218941350338	3.23245501482634	-0.0724727970854238	0.892043256049041	0.9596010491436
Merged-chr3-146499780-4	chr3	146499678	146499878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027617)	promoter-TSS (NM_027617)	-25.0	NM_027617	70951.0	Mm.383235	NM_027617	ENSMUSG00000028188	Spata1	4921536I21Rik|AV266943|SP-2	spermatogenesis associated 1	protein-coding	8.36774284173722	8.31803471378705	8.04034938839009	7.99398657476333	8.31738556359455	8.39619418375792	8.49203214129209	8.17086769404378	0.20809787429937	0.232590048707845	0.542164234902269
Merged-chr2-112259668-4	chr2	112259516	112259716	+	901.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172521)	promoter-TSS (NM_172521)	-325.0	NM_172521	213765.0	Mm.78965	NM_172521	ENSMUSG00000041358	Nutm1	4932438M10|Nut	NUT midline carcinoma, family member 1	protein-coding	3.50363401341978	3.32433770640892	3.60216730978178	3.42965196750662	3.3611853241601	3.3944621601729	3.32880122205059	3.08536933488062	-0.58720570939439	0.27120522454131	0.582992988776974
Merged-chr7-49251193-4	chr7	49251083	49251283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 1 of 37)	(T)n|Simple_repeat|Simple_repeat	4994.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	6.4048226328724	5.69111908880403	5.8805806956387	6.28015586734508	5.995278564924	6.21467473208847	5.75090629447844	6.13708208432993	-0.107740894729278	0.699868254973126	0.878944237004995
Merged-chr10-87853543-2	chr10	87853441	87853641	+	768.25	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-4724.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	3.82840846924177	3.72784065052929	3.48378633199242	4.01600991435486	4.22939489992628	3.72631909504121	3.95477344685584	3.72160916832197	0.403414648375596	0.416951600433733	0.710744672757979
Merged-chr13-58205199-4	chr13	58205078	58205278	+	787.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026842, intron 1 of 10)	intron (NM_026842, intron 1 of 10)	10475.0	NM_152234	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	4.42767312615057	4.24301560901062	4.50949641213513	4.82947778503889	4.25743736391468	4.42400201986048	4.36612418254438	4.24629381194353	-0.505997232071903	0.204291250417754	0.507481252945077
Merged-chr4-132971750-4	chr4	132971648	132971848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2347.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	5.27927874612789	5.58105410993371	5.176327489952	5.7107636959615	5.81500305304907	5.55269326802838	5.52143559316927	5.74430134898279	0.327086638980684	0.266487490749532	0.578164752957072
Merged-chr13-49959138-2	chr13	49959038	49959238	+	860.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	277008.0	NM_172015	105148.0	Mm.21118	NM_172015	ENSMUSG00000037851	Iars	2510016L12Rik|AI327140|AU044614|E430001P04Rik|ILRS	isoleucine-tRNA synthetase	protein-coding	2.6636881107462	2.66524055959324	2.83110722953896	2.48397895059072	2.29296957091269	2.26511576918082	2.39435104797685	2.53786089488394	-1.69242433824742	0.0289276464233696	0.163402979507105
Merged-chr11-94128083-4	chr11	94127941	94128141	+	958.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83413.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	3.85498554827924	3.83672103943621	3.74998590068738	3.74105583867068	3.87522418516716	3.92396615611082	3.93598834222167	4.08415840531678	0.459762142731672	0.285770725196365	0.597477154288458
Merged-chr6-89405189-4	chr6	89405081	89405281	+	984.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 5 of 6)	intron (NM_001167736, intron 5 of 6)	-42568.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	4.91629209841485	4.95801726032074	5.31287568241752	5.29834148069451	5.20951109450123	5.30386608494097	5.07240690385351	5.1905756124105	0.0925070913313528	0.76588702854383	0.908405583340288
Merged-chr3-116333390-3	chr3	116333268	116333468	+	762.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173553, intron 5 of 13)	intron (NM_001173553, intron 5 of 13)	20876.0	NM_001355646	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	3.35587162646719	3.77717132800003	3.29899363436925	3.25218809341003	3.08807458856861	3.28861549148434	3.34314503553818	3.17473694849774	-0.776597904170469	0.169519812151919	0.462166795969107
Merged-chr12-116595939-4	chr12	116595839	116596039	+	835.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011215, intron 2 of 22)	MTD-int|LTR|ERVL-MaLR	110219.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	3.31559578254039	3.40865186988181	3.59386772177641	3.2670182585955	4.2692718875721	4.15244368961013	4.45808818123177	4.19275714741012	2.58165884133363	2.13441958606321e-08	1.06465207930199e-06
Merged-chr15-5141985-3	chr15	5141899	5142099	+	887.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1862.0	NM_001013367	105787.0	Mm.207004	NM_001013367	ENSMUSG00000050697	Prkaa1	AI194361|AI450832|AL024255|AMPKalpha1|C130083N04Rik	protein kinase, AMP-activated, alpha 1 catalytic subunit	protein-coding	3.18996590520281	3.12357338905336	2.94792558148849	3.28175085138517	2.97655914749075	3.18395103310951	3.06404696376968	3.07331887666147	-0.311161408275926	0.588606272861713	0.819794268696902
Merged-chr2-173586760-4	chr2	173586665	173586865	+	813.233337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027957, intron 13 of 14)	CpG	-8424.0	NM_027303	70065.0	Mm.425115	NM_027303	ENSMUSG00000027517	Ankrd60	1700019A24Rik|1700030G11Rik	ankyrin repeat domain 60	protein-coding	4.07290369068154	4.23221377812958	4.17068839621914	4.23044444636571	4.21539857197117	3.85159333759285	4.64389428225926	4.25839958518467	0.228070262172881	0.59430937309919	0.823411261518897
Merged-chr1-64120701-6	chr1	64120587	64120787	+	837.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	702.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	3.65884980540102	3.7909902905008	3.71392193520737	3.51414882662761	3.53622408246059	3.98700404245384	3.80029545634026	3.95423112482782	0.472311151668434	0.318496146810997	0.630371357872652
Merged-chr18-55341740-1	chr18	55341640	55341840	+	607.0	f0_balb.idr	Intergenic	Intergenic	-349149.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.03876464403488	2.87351330548608	2.92644608765443	3.2045630040899	2.39889127104305	2.69781786641013	2.91521522943924	2.66540212661079	-1.69491006479497	0.0221840188969091	0.137271692694349
Merged-chr10-25297132-4	chr10	25297051	25297251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 1 of 7)	CpG	2012.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	6.6354334185333	6.69159278424345	6.0790519651627	6.42193247186223	6.47808980676983	6.16467240308426	6.58814842120277	6.09709986094197	-0.183339304390297	0.470199943376241	0.748973227079762
Merged-chr11-78984964-4	chr11	78984859	78985059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159301)	promoter-TSS (NM_001159301)	-35.0	NM_010708	16859.0	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	7.31772759522245	7.59449289615702	7.46952163466272	7.67792661520622	7.55845441291306	7.6371416871321	7.41360154390875	7.21414145650913	-0.0846218956322376	0.658943333905891	0.858075830194168
Merged-chr19-12466292-4	chr19	12466192	12466392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172442)	TTS (NM_172442)	5513.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	7.68542303467042	7.80716036523896	7.53802476387385	7.20384794609115	6.92476330436438	6.60312627024088	6.34773757411098	6.4366701530407	-1.32400761788877	3.7536073362974e-08	1.77881502390355e-06
Merged-chr9-100643442-4	chr9	100643338	100643538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357264)	promoter-TSS (NM_001357264)	-10.0	NM_009282	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	9.13980164889434	9.27617475482039	9.25766392451098	9.17849058864372	9.40197819104548	9.62053183947526	9.7145279973649	9.43699813806495	0.412457477161975	0.00472818697988983	0.0455964802928571
Merged-chr3-79542741-4	chr3	79542650	79542850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	24929.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	5.98092713333008	6.26064160275918	6.41548629133453	6.50943097949532	6.37231510605129	6.27098399680196	6.08448473995789	6.11133980491172	-0.149688837935305	0.540045137108516	0.792463821677907
Merged-chr18-73502138-4	chr18	73502039	73502239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-70566.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	6.32086494497564	6.13355925235972	6.56247873526732	6.58568380681	5.76633811623794	5.7556642670442	6.27178629335779	6.04197429346609	-0.686140997078725	0.0082467040887862	0.0685658393103274
Merged-chr17-86162094-4	chr17	86161991	86162191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5694.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	5.33050911683734	5.68885610227241	5.19073411932208	5.63517959048263	6.02327767044032	5.63658807368306	6.30479656489468	5.54224158988962	0.705485975460938	0.0234200801841433	0.142043105608992
Merged-chr11-103253762-2	chr11	103253662	103253862	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	13639.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	3.68820915517054	3.58106228594567	3.53802911716399	3.35351855683049	3.43975657606796	3.5994414174404	3.22960053797149	3.53603050269548	-0.267823776789077	0.603270029852764	0.828026186791373
Merged-chr14-46808114-4	chr14	46808003	46808203	+	937.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_022023)	TTS (NM_022023)	14139.0	NM_022023	63985.0	Mm.87312	NM_022023	ENSMUSG00000062014	Gmfb	3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e	glia maturation factor, beta	protein-coding	4.51594735677874	4.56628540635934	4.74504398356641	4.70442238973908	4.51382101941892	4.4669495303513	4.31944805431355	4.67032532053665	-0.31408244942259	0.383258774340986	0.685159161661391
Merged-chr3-54806561-3	chr3	54806469	54806669	+	937.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133231, intron 1 of 2)	intron (NM_133231, intron 1 of 2)	1222.0	NM_133231	170767.0	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	4.48483146739809	4.36644534625959	4.77442599361161	4.59462630335931	4.70501186433821	4.18186045684199	4.14732762998114	4.26195774220583	-0.46075762238035	0.26130092959847	0.573233645684815
Merged-chr13-74640079-6	chr13	74639975	74640175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030711, intron 1 of 18)	CpG	222.0	NM_030711	80898.0	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	A-LAP|ARTS-1|Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	6.76556607643911	6.60298265569821	7.30859450306356	6.77510751520561	6.51733155438927	7.04023562489185	6.57967305759222	6.80448426438794	-0.198770397768113	0.420725218988275	0.713511719100484
Merged-chr4-118992014-4	chr4	118991924	118992124	+	852.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30057.0	NM_133892	100470.0	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	4.45746652889129	4.43289853006768	3.79656711622976	3.96647909935935	4.67912117301183	4.54858341832881	4.0738298131932	4.64051429516043	0.752498215339092	0.0914765114805623	0.330477397154424
Merged-chr16-62786175-4	chr16	62786093	62786293	+	843.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178925, intron 1 of 5)	Lx8|LINE|L1	523.0	NM_178925	106338.0	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	3.62428723483665	3.687320199174	3.7878565253455	3.88762435167583	3.49044036008583	3.68330060348732	3.86922525170182	4.17710025693223	0.19915533796161	0.686295280430177	0.871787672169905
Merged-chr12-34504432-1	chr12	34504332	34504532	+	627.0	f0_c57.idr	intron (NM_001271386, intron 4 of 27)	intron (NM_001271386, intron 4 of 27)	24457.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	3.663751558977	3.539831650837	3.66421643434754	3.98510019403094	3.90400168578601	4.20270499732796	4.22260220508264	4.20081385278269	1.06133778152059	0.0254760699119009	0.15044894883093
Merged-chr2-71039883-4	chr2	71039769	71039969	+	932.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	intron (NM_145524, intron 1 of 9)	15737.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	4.32970033278981	3.97586365809393	4.50432554892694	4.70603059236226	4.58332319473637	4.31020913488104	4.67022273261237	4.68973509540731	0.338316555212078	0.414230969651125	0.709018785350425
Merged-chr17-73302231-4	chr17	73302122	73302322	+	922.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97074.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	4.30549247331453	4.26481187558094	4.98893872298231	4.71492696892167	4.48766569281538	4.53339033521401	4.70678178966613	4.76182144367283	0.0385120564943374	0.922238471069007	0.971194569280243
Merged-chr3-54709181-4	chr3	54709069	54709269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019995, exon 11 of 20)	exon (NM_019995, exon 11 of 20)	14046.0	NM_001358015	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	6.78307358887476	6.83886148251003	6.92329031088221	7.44912581809434	6.9256287993966	6.85476235237906	7.05944702117365	6.79405232126249	-0.186399033153303	0.425787977592114	0.717190555429026
Merged-chr7-88260488-3	chr7	88260386	88260586	+	741.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17599.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	3.96268445401641	4.61309518376674	4.05940323994999	3.39875591361778	4.16142935124671	3.80934240420544	3.94607597415446	3.7450225217965	-0.412450541052396	0.44766608179657	0.733172822443065
Merged-chr3-129831471-4	chr3	129831404	129831604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026578)	promoter-TSS (NM_026578)	-108.0	NM_026578	68147.0	Mm.24873	NM_026578	ENSMUSG00000028010	Gar1	AA409823|AI326794|C430047J18Rik|Nola1	GAR1 ribonucleoprotein	protein-coding	7.45935464687798	7.54880172929786	7.34337039162921	7.36849791155604	7.35886945872046	7.36833304134993	7.36667193704233	7.220459026347	-0.13353449098187	0.447138882500817	0.732764620286541
Merged-chr5-21034678-4	chr5	21034584	21034784	+	975.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001356590, exon 1 of 19)	5' UTR (NM_001356590, exon 1 of 19)	563.0	NM_001356592	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	5.05052502930386	4.88326319115571	5.01809352614299	4.90729205368272	4.78636450704386	5.2543022377642	5.02675398682439	5.08030596472562	0.148361968286411	0.643127385420211	0.849459897971419
Merged-chr9-50452601-4	chr9	50452486	50452686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41939.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	5.57564326636545	5.8824820071572	5.33550723612459	5.56946636541423	5.67917297676927	5.6680588926578	5.9028087931557	5.77516636707625	0.248858685786315	0.360163822666602	0.66568674445473
Merged-chr2-122408644-4	chr2	122408513	122408713	+	954.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-32207.0	NM_172980	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	4.43080418999556	4.51366595257715	4.64407587973687	4.74326475740562	4.53410798639613	4.81630420797022	4.58303067489621	4.88896601251444	0.228102823533508	0.525212884300677	0.783229855070132
Merged-chr8-120436061-4	chr8	120435965	120436165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52801.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	7.22248885027356	7.31146358797653	7.46558903759786	7.27485944253572	7.24272273052409	6.48912714750164	6.97966447203662	6.76001913067278	-0.558156807440641	0.0131524855730447	0.0957435846393692
Merged-chr9-60795028-2	chr9	60794928	60795128	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357408, intron 1 of 19)	intron (NM_001357408, intron 1 of 19)	586.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	2.99170051081706	3.05777875566	2.8549576390069	2.89857451054492	2.95516695817807	3.34421694636353	3.21656671404498	3.33224424740112	1.05565187146417	0.0677853376882944	0.277838185299054
Merged-chr12-69457281-1	chr12	69457181	69457381	+	564.0	f0_balb.idr	Intergenic	Intergenic	18269.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	3.08365834315082	3.04674750009473	3.23767465404141	2.29240853079604	2.54729597849885	2.89270557616725	2.6281001711197	2.77831776885942	-1.11712305423895	0.151514077165527	0.435197146949884
Merged-chr6-113740737-4	chr6	113740671	113740871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024206)	promoter-TSS (NM_024206)	-90.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	5.75066585677328	5.47933924385255	4.93620992657689	5.28225611940808	5.7772726376318	5.56835206309574	5.42369504132692	5.38938315240075	0.288393340086844	0.359923551626282	0.665587912953958
Merged-chr4-44292769-3	chr4	44292676	44292876	+	825.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8141.0	NM_010790	17279.0	Mm.268668	NM_010790	ENSMUSG00000035683	Melk	AI327312|MPK38|mKIAA0175	maternal embryonic leucine zipper kinase	protein-coding	3.14241661705139	3.04848602631564	3.21009835218332	3.06488672587103	3.7207669738376	3.56864649922573	3.3227316505317	3.90403508508088	1.86068997921712	0.000498076727774503	0.00769036950244281
Merged-chr4-129827935-4	chr4	129827827	129828027	+	980.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	7219.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	4.82289406546591	5.28657981476813	4.51476514109134	4.49918460260092	5.05522007546526	5.30924554699834	4.98235088991235	5.35809105392714	0.708404452430202	0.0548859214860865	0.244736265454999
Merged-chr7-88279722-4	chr7	88279601	88279801	+	966.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 1 of 6)	B1_Mus1|SINE|Alu	1616.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	4.50391498061128	4.82260403408306	4.78961225049858	4.61224240965532	4.99799881265483	4.68019247014088	4.73003955154866	5.01880375465276	0.393850574154035	0.249701681939936	0.560749495797661
Merged-chr11-21424514-4	chr11	21424399	21424599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53232.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	6.38453838404059	6.18786618113058	6.02538327704924	6.28747338530729	6.25014565198471	6.01422532845849	5.80677939538704	6.02108825483889	-0.290023419022606	0.237271127615162	0.54744640494391
Merged-chr11-101763855-3	chr11	101763764	101763964	+	849.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144831, intron 19 of 22)	intron (NM_144831, intron 19 of 22)	21446.0	NM_008815	18612.0	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	3.56962037012294	4.00112142700035	3.57007760698948	3.71501368911106	3.81040345349966	3.49987116458192	3.71612572392109	3.67783368830132	-0.129091203168438	0.79084609018177	0.918885370783943
Merged-chr16-22009340-4	chr16	22009252	22009452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357424)	promoter-TSS (NM_001357424)	-132.0	NM_029457	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	8.55071676579814	8.93466649571908	8.42512985270527	8.44718529742558	8.81425507844878	8.79121680436304	8.70443921398671	8.7050241884614	0.187425595286619	0.277135599798581	0.589300198902527
Merged-chr17-17587566-4	chr17	17587487	17587687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	36902.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	6.64994968730304	7.21189117919421	6.77610552890183	7.48141151930858	6.86538036191608	7.09364298291218	6.94620995527344	6.7860685562123	-0.229815563961382	0.352777698332744	0.659722657496358
Merged-chr10-28425575-3	chr10	28425484	28425684	+	799.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359356, intron 7 of 30)	MTEa|LTR|ERVL-MaLR	-242776.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	3.52113599713165	3.58963498680265	3.78880051302488	4.46918405856883	3.16116880608198	3.22631841252626	3.5080939355544	3.78643990845271	-1.44301205577234	0.0189466689200856	0.123351774175686
Merged-chr2-79696676-4	chr2	79696568	79696768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11112.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	7.60554778646531	7.37833780247722	7.48205082346843	7.43326822472217	7.58797742038839	7.55160192240896	7.46366557794285	7.47688826494619	0.0668326910297243	0.696355754247755	0.877179524857553
Merged-chr2-122376468-4	chr2	122376371	122376571	+	932.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7553.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	4.31501522329725	4.17650633160009	4.00779423322009	4.10582045246934	4.18153200357308	4.65962266076751	4.57969555115838	4.94786494399203	1.06772373932619	0.00924203546717632	0.074601819292146
Merged-chr2-152343541-4	chr2	152343463	152343663	+	934.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175093, intron 1 of 3)	PB1D10|SINE|Alu	497.0	NM_175093	228775.0	Mm.276018	NM_144554	ENSMUSG00000032715	Trib3	Ifld2|Nipk|SINK|SKIP3|TRB-3|Trb3	tribbles pseudokinase 3	protein-coding	4.74698775793087	4.88805034762612	4.78413186581033	4.5003035533786	4.91685930796302	4.49410005052341	4.76124917248776	4.45661700553819	-0.0906129082724181	0.805191119289922	0.925171083261684
Merged-chr16-38731103-4	chr16	38731006	38731206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11153.0	NR_152434	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	5.71790641640632	6.00482744850436	5.43131334751248	5.82192276214637	6.07940319840696	5.64271428155333	6.2887292638867	5.60749770377649	0.284910394860557	0.334683557342573	0.645157506515558
Merged-chr5-74793718-3	chr5	74793685	74793885	+	871.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90882.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	4.11572209547314	3.88376564043321	4.35287491198002	3.87514492452364	2.87156556614159	3.05095389739232	3.08798379500305	3.0151001849107	-5.49971673265442	6.583197372136e-08	2.93599878290268e-06
Merged-chr6-72933163-4	chr6	72933064	72933264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25068.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	7.699281116771	7.52928159019589	7.76436232764645	7.94847222820369	7.74426354902099	7.44284117798879	7.80907626119221	7.7034787992677	-0.0869270261394071	0.640919691292479	0.848492034120213
Merged-chr19-12806413-3	chr19	12806313	12806513	+	949.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134152, intron 2 of 8)	intron (NM_134152, intron 2 of 8)	7834.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	3.63330234680728	3.74970785491878	3.4818097289134	3.77371052461457	2.944389534265	3.22365331530613	3.35674216340452	3.17924579696045	-1.85566563142083	0.00129386867245662	0.0165640788195665
Merged-chr12-73044773-3	chr12	73044701	73044901	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009189, intron 1 of 1)	CpG	1911.0	NM_009189	20471.0	Mm.4645	NM_009189	ENSMUSG00000051367	Six1	BB138287	sine oculis-related homeobox 1	protein-coding	3.4141190594126	3.38619601691122	3.52112945276552	3.29025434468528	3.34625146459422	3.34849794779764	3.28675609247961	3.61716899456588	0.0237376921864024	0.963316571209112	0.986915241333008
Merged-chr5-110809390-3	chr5	110809287	110809487	+	949.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347394, intron 1 of 27)	intron (NM_001347394, intron 1 of 27)	694.0	NM_009469	22241.0	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	3.53532775410173	3.7252579845115	3.47675033991396	3.46241121043231	3.93661318735939	3.52984345040206	3.86961294582301	3.64438439099869	0.656259352888732	0.173581736656042	0.467652325262696
Merged-chr10-83634702-4	chr10	83634595	83634795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145220, intron 2 of 20)	intron (NM_145220, intron 2 of 20)	13969.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	5.29834739119115	5.16072073441417	5.10676688981731	5.24583670191193	5.29179558160431	5.31678434356384	5.776010453089	4.79252356104141	0.244427876074421	0.466651395648605	0.746440951133739
Merged-chr5-142401926-4	chr5	142401826	142402026	+	888.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_199068, exon 1 of 9)	exon (NM_199068, exon 1 of 9)	429.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	3.89743866534428	4.13448765004086	4.0885418749543	3.72727962229927	3.55035879034446	3.79552569773707	4.06994950525062	4.25134266020476	-0.0706539043913557	0.883857267612738	0.956344438085205
Merged-chr5-91962917-4	chr5	91962817	91963017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073442)	promoter-TSS (NR_073442)	35.0	NR_028429	381650.0	Mm.159453	NR_028429	ENSMUSG00000102644	Thap6	4930534K21Rik|AI448650	THAP domain containing 6	pseudo	7.18241948232934	7.61663570835152	7.81550764258781	7.2508124454846	7.6063742138389	7.67008875845092	7.7629276513954	7.70371654329522	0.263706600245064	0.19599370567542	0.496923700800409
Merged-chr17-71087160-1	chr17	71087060	71087260	+	628.0	f1_c57bl6.idr	intron (NM_001083934, intron 18 of 36)	B3|SINE|B2	67603.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	2.42297437130088	2.51216324093107	2.58178251547995	2.31783051493786	2.99868164923302	3.02752802775996	3.06465198928646	3.02444667374655	3.05262099608256	7.45845167539597e-06	0.000212269145063178
Merged-chr5-74957457-4	chr5	74957357	74957557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045866, intron 2 of 4)	intron (NR_045866, intron 2 of 4)	8263.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	6.51433557948379	6.48558936916886	6.412976154628	6.92295056580119	6.33174218733766	6.0474549489255	6.82293665690306	6.40838608366856	-0.263580489132926	0.313983161716025	0.62599967947245
Merged-chr2-119242489-3	chr2	119242400	119242600	+	866.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016907, intron 2 of 10)	intron (NM_016907, intron 2 of 10)	5140.0	NM_016907	20732.0	Mm.104955	NM_016907	ENSMUSG00000027315	Spint1	HAI-1	serine protease inhibitor, Kunitz type 1	protein-coding	2.55329651884702	2.56980831936336	2.86197048886622	2.30820929337857	3.19399130907931	3.49797991706104	3.04310243225805	3.32546231195771	3.51144337958783	1.71817809139964e-06	5.71219983034726e-05
Merged-chr9-99568962-4	chr9	99568853	99569053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166138)	promoter-TSS (NM_001166138)	-54.0	NM_028768	74125.0	Mm.234823	NM_028768	ENSMUSG00000032468	Armc8	1200015K23Rik|Gid5|HSPC056	armadillo repeat containing 8	protein-coding	6.88709207162957	6.93722340229672	6.80576428152969	6.63602974155343	6.86448543658578	6.93924317727852	7.11552225405047	6.85652248292739	0.188806313197841	0.349568945884301	0.657071089022359
Merged-chr2-166711104-4	chr2	166711011	166711211	+	837.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	2721.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.02489046545534	4.20927619657849	3.97505193449504	3.47221647536515	4.42684296885194	4.29332785687023	3.85252550200749	4.20694572534316	0.716367537134343	0.133978438835371	0.407575489266725
Merged-chr6-65115046-4	chr6	65114951	65115151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001355250, exon 24 of 24)	3' UTR (NM_001355250, exon 24 of 24)	29679.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	6.8490040846174	6.29468002009723	7.24829217619723	7.3821788907138	6.66213940287808	6.80250411108246	7.04086295369142	6.831486039007	-0.248850819464244	0.361520759643288	0.666788094699668
Merged-chr11-70845233-2	chr11	70845133	70845333	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291141, intron 1 of 16)	G-rich|Low_complexity|Low_complexity	472.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	4.35820034749856	4.66182941747707	4.26212807675047	4.63162369730076	4.40536680086547	4.99110174025426	4.24406717558924	4.60917989368519	0.192954954787066	0.634241911202749	0.845095562869841
Merged-chr4-126438061-4	chr4	126437983	126438183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001317173, exon 19 of 19)	3' UTR (NM_001317173, exon 19 of 19)	-8541.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	6.46399844300226	6.74372038061748	5.95677190901507	5.96295441139949	6.52648455697416	6.43155767325952	6.06224410603089	5.85266731610721	-0.105163250205991	0.72607006835185	0.891025770427008
Merged-chr4-88714370-4	chr4	88714255	88714455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	8153.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	6.72200017826956	5.92922007061879	6.54015073085905	7.24557701994503	6.38716328590451	6.46496198940995	6.67460693804422	6.58375225198568	-0.256627221820418	0.394818367587852	0.69379293404769
Merged-chr5-65247473-4	chr5	65247382	65247582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153391, exon 28 of 37)	exon (NM_153391, exon 28 of 37)	47786.0	NM_153391	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	6.38038641407018	6.39000088501902	6.13860915667521	5.98984216426298	6.44001418456405	6.74443969073232	5.58251947672762	5.93391532532964	0.0348041940701623	0.911014127492947	0.966904162861598
Merged-chr17-28163878-1	chr17	28163778	28163978	+	599.0	f0_c57.idr	intron (NM_001004366, intron 10 of 21)	intron (NM_001004366, intron 10 of 21)	-13318.0	NM_001357995	224656.0	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding	3.25821293860312	3.03851189369785	3.0695677348666	3.1139438192703	3.57278984521909	3.5910231204082	3.24636786405345	3.25692159173631	1.12260153879291	0.0383307076029133	0.196352247803855
Merged-chr9-115746641-4	chr9	115746532	115746732	+	971.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-162823.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	3.64464617407002	3.59003671000828	4.46871792829019	4.10010200287647	4.28242875665212	4.02929544010958	4.68743521163928	4.85634495049984	1.19642769257673	0.0224419454634294	0.138321687128978
Merged-chr15-103260564-4	chr15	103260320	103260520	+	971.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2017.0	NM_001302341	18022.0	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	2.7807576975384	2.70135538297007	2.91192118210776	2.69855541783977	2.85733224752363	3.02200221446745	3.01865254747842	3.18890165490569	1.11982741678482	0.0632441667659234	0.266889308775085
Merged-chr12-80769818-4	chr12	80769731	80769931	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9116.0	NM_001008423	380768.0	Mm.29367	NM_001008423	ENSMUSG00000062961	Ccdc177	Gm1568	coiled-coil domain containing 177	protein-coding	3.53288947530234	4.11579171223264	3.71816220082059	3.81342013473952	4.28085627939806	3.94986243540086	4.1751693614489	3.71619510634261	0.650457602756707	0.176731814064117	0.471905833112121
Merged-chr1-177338871-3	chr1	177338781	177338981	+	933.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90114.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	3.58148884665955	3.68759231516207	3.79197008926413	3.95468625293084	3.77163112158517	3.69770521717128	3.62379641325299	3.58009840419467	-0.302948860089216	0.524884478175119	0.783112942735533
Merged-chr11-95851050-4	chr11	95850935	95851135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD3|LINE|L1	-7782.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	8.02941688768219	8.18579929544301	7.54448933492587	7.74621915829011	7.99353453817798	8.06377628602345	7.76551949269426	7.86628481788389	0.0376840513406455	0.84917351711343	0.943016077779251
Merged-chr1-91034324-4	chr1	91034234	91034434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	PB1D9|SINE|Alu	-19110.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	6.2718926094846	6.1176542252754	5.90632858609414	5.91577505903456	6.19174112069847	5.98546687209553	6.1684943472465	5.82925439766096	0.0100879579773873	0.967754458461793	0.98857340124644
Merged-chr17-67347328-7	chr17	67347234	67347434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	7125.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	7.27468181466542	7.25575548265406	7.42273035525397	7.16593777077297	6.80446795534372	7.37779887617895	7.14277145778008	6.89891776880399	-0.288793706090492	0.166615267621759	0.457960964592688
Merged-chr11-98943993-2	chr11	98943893	98944093	+	993.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177303, intron 1 of 8)	intron (NM_001177303, intron 1 of 8)	4282.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	3.51161452164162	3.38187346083683	3.45770757411276	3.28781162273733	3.74772526348673	3.62816932858527	3.38824945717454	3.2778743551785	0.424945605358888	0.411594645436761	0.707039657967545
Merged-chr7-102567964-3	chr7	102567863	102568063	+	766.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2481.0	NM_009277	20821.0	Mm.321227	NM_009277	ENSMUSG00000030966	Trim21	Ro52|Ssa1	tripartite motif-containing 21	protein-coding	4.29388540650712	3.9245669065211	3.85410198697695	4.2084646970864	3.78586122681109	3.74297897763572	3.93857866162347	3.85193547422343	-0.719675608054696	0.109174724157646	0.364867484778717
Merged-chr1-135669999-4	chr1	135669903	135670103	+	992.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50060.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	5.51246477802385	5.25585061382256	5.45918852814543	5.46996186168976	5.12198181562598	5.13879999136177	5.40391787273577	5.89420696180755	-0.00576000917823001	0.985638396998279	0.994721627180638
Merged-chr5-130025996-3	chr5	130025916	130026116	+	823.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1635.0	NM_133768	109900.0	Mm.23869	NM_133768	ENSMUSG00000025533	Asl	2510006M18Rik|ASAL	argininosuccinate lyase	protein-coding	3.35348895632903	3.54520163426271	3.58823433535907	3.24836840017076	3.62699766316179	3.75964971269891	3.81418024277788	3.5861958252739	0.868335299626644	0.0767589054997567	0.299458598770468
Merged-chr11-69368165-4	chr11	69368062	69368262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146019, intron 1 of 39)	intron (NM_146019, intron 1 of 39)	1264.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	6.23115535654687	6.32493954301409	6.11115040474597	6.26876991594581	6.4367142722586	6.10758390362114	5.84967972961383	6.57778629777837	0.0627084711535052	0.805923976746733	0.925317663285668
Merged-chr11-99179105-4	chr11	99178995	99179195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-24018.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	6.2807551814985	6.58922657729368	6.65810495851969	6.40814854615863	6.43536667926495	6.13627704310022	6.34149937227068	6.1784443164399	-0.300541675113245	0.190317023191454	0.489452447654893
Merged-chr1-154118572-4	chr1	154118471	154118671	+	932.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82616.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	4.94531677771822	4.56875575703268	4.56015854436922	4.17308311899452	4.77567697497283	4.9212501601042	4.16544801976647	4.42810058702906	0.0589201661385662	0.890384264967158	0.958997364311038
Merged-chr4-132806384-4	chr4	132806286	132806486	+	840.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR24|LTR|ERV1	-10022.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	4.42159334188001	4.52864824654809	3.66202249969392	3.92082208847872	4.87552998048857	4.46720246790968	4.40160761125138	4.37742369224656	0.872473938779392	0.0630413963551561	0.266319242526684
Merged-chr7-140102331-4	chr7	140102216	140102416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001286217, exon 1 of 6)	exon (NM_001286217, exon 1 of 6)	125.0	NM_001286217	69064.0	Mm.41915	NM_026928	ENSMUSG00000025466	Fuom	Fucu|Le51	fucose mutarotase	protein-coding	5.24468530521979	5.33192675451349	5.15525260255557	4.99090403096369	4.87756721211573	4.84844131425378	5.03336725858852	5.15170070286671	-0.376944886500674	0.234068580278661	0.543723238550186
Merged-chr11-83969249-1	chr11	83969149	83969349	+	863.6666869999999	f0_balb.idr	intron (NM_194341, intron 1 of 19)	B3|SINE|B2	4818.0	NM_194341	217030.0	Mm.82680	NM_194341	ENSMUSG00000034940	Synrg	Ap1gbp1|SYNG	synergin, gamma	protein-coding	3.8590015390055	4.0127106821049	3.46475642157941	4.01503762643974	3.69988996359493	3.76616703556025	3.74333802965956	3.90494018749703	-0.256443347592475	0.592614275439791	0.822268734360933
Merged-chr2-32130641-3	chr2	32130550	32130750	+	589.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20498.0	NM_172661	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	3.0154942881202	3.07969749010316	2.95029798428639	3.10831951297537	3.01348465089922	3.12504135302425	3.28758380351873	3.29963936508607	0.540289410483599	0.33917874053751	0.648487712540904
Merged-chr10-81129904-1	chr10	81129804	81130004	+	556.0	f0_balb.idr	Intergenic	Intergenic	-6367.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	3.26688444962266	3.26218956449672	3.32780548443082	3.02424119200535	3.56874861463233	3.76114153426003	3.47936937922462	3.2023920992013	1.06718370359043	0.0472428028772602	0.223762008650553
Merged-chr16-95724379-4	chr16	95724273	95724473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A1|LTR|ERVK	21966.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	7.95147475411642	7.50083154565477	7.92532023751394	8.32875529916014	7.70010836511479	7.54341640879935	7.63459366239866	7.76493764013226	-0.396803871477188	0.0617988203323752	0.263053356801706
Merged-chr9-75410134-4	chr9	75410035	75410235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027418)	promoter-TSS (NM_027418)	-49.0	NR_040719	71274.0	Mm.399152	NR_040719	ENSMUSG00000097021	4933433G15Rik	4921522K19Rik	RIKEN cDNA 4933433G15 gene	ncRNA	9.19937783436054	9.19581182887449	9.33641670021547	9.05206852703854	9.3400783041969	9.35996975375887	9.35858877556549	9.22895357677899	0.157082042173551	0.267534855114295	0.579217131190323
Merged-chr12-72535381-4	chr12	72535305	72535505	+	818.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026327)	promoter-TSS (NM_026327)	-952.0	NM_026327	67708.0	Mm.11233	NM_026327	ENSMUSG00000034501	Pcnx4	1810048J11Rik|4932413O10|AU017192|Pcnxl4	pecanex homolog 4	protein-coding	4.11059049685093	4.61191877799361	3.79026695218843	3.66124909598282	4.27083401405566	4.18875208782966	4.18375543101573	4.10868901217854	0.235695674083216	0.624991891580093	0.839665122417083
Merged-chr15-55381851-4	chr15	55381757	55381957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 11 of 47)	intron (NM_181277, intron 11 of 47)	74107.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	7.76693509660246	7.49761851087221	7.87198465427732	7.83937326771709	7.56220096562267	7.65087068634357	7.79063445209977	7.53479387801826	-0.154072001801108	0.391532606701176	0.691279263407274
Merged-chr6-99522810-4	chr6	99522709	99522909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-12329	-1816.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	5.8654855799133	5.89585223227872	6.08649988901042	5.24547406018463	5.62742376121149	5.80187488736974	5.39898338057708	5.39096378014062	-0.381657214136096	0.229137712208026	0.538010661957944
Merged-chr6-56714809-4	chr6	56714714	56714914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030235)	promoter-TSS (NM_030235)	-91.0	NM_030235	78937.0	Mm.105343	NM_030235	ENSMUSG00000029787	Avl9	5830411G16Rik|D730049P16Rik|mKIAA0241	AVL9 cell migration associated	protein-coding	9.03580589352596	9.34904925163366	9.28438425012068	9.393596317873	9.27032064287157	9.22557380451419	9.40986442310155	9.0734989353676	-0.0312228512191296	0.841949758312069	0.940020733877539
Merged-chr10-118162903-1	chr10	118162803	118163003	+	924.5	f0_balb.idr	intron (NM_001162904, intron 12 of 14)	intron (NM_001162904, intron 12 of 14)	21116.0	NM_010785	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	3.50280484705292	3.39840317144193	3.76741716643913	3.76940958191704	2.80563619994237	2.92363081411828	2.80500674085179	2.88973891520224	-3.78114287169462	2.20376791163971e-06	7.12038112494792e-05
Merged-chr2-30554055-4	chr2	30553949	30554149	+	875.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-40995.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	4.65161338266881	4.28104009053479	4.13757128839119	3.98793017088685	4.2733737200491	4.31246732551457	4.29964355310734	3.92422213667522	-0.156936275612674	0.718508110985758	0.887579709565285
Merged-chr19-53312663-4	chr19	53312529	53312729	+	903.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	1184.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	4.92579896612841	4.7036479488997	4.82287957779171	4.38698451505956	4.59104219079549	5.03041220681112	4.68776058691617	4.95598390810919	0.237536064525397	0.516928580113586	0.778586893307058
Merged-chr9-59755391-4	chr9	59755272	59755472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173018, intron 1 of 43)	intron (NM_173018, intron 1 of 43)	4198.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	6.21678332995417	6.16394827058075	5.94773404089449	6.31816114354485	6.17274678051571	6.14685650033689	6.02766837697149	5.77018339495527	-0.209781714626702	0.394475358943732	0.693635414383792
Merged-chr7-30194696-1	chr7	30194596	30194796	+	1000.0	f1_balb.idr	intron (NM_009795, intron 1 of 10)	intron (NM_009795, intron 1 of 10)	457.0	NM_009795	12336.0	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|Cdps|Css1|D7Ertd146e	calpain, small subunit 1	protein-coding	4.18049106741122	4.30920747992969	4.18111724606201	4.27839261322602	4.15508813836747	4.25888319891463	4.52182079627748	3.92197084395296	-0.0286418605737765	0.944386470284549	0.980029938254562
Merged-chr5-142458923-1	chr5	142458823	142459023	+	850.0	f0_balb.idr	3' UTR (NM_199068, exon 9 of 9)	3' UTR (NM_199068, exon 9 of 9)	-5008.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	4.27142222214996	4.32398960464149	4.35185420068761	3.8686981913201	4.39078259928146	4.01469350046985	3.92946964574888	3.58138999846878	-0.48788179135254	0.32170408583463	0.633233286881578
Merged-chr1-131038310-4	chr1	131038193	131038393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18448.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	6.32618439638762	6.31374163766767	6.00168537399407	5.62913502210582	6.45396644259366	6.74536787009055	6.31248895190791	6.17049753661871	0.53436164894254	0.0529985378985335	0.240108920508768
Merged-chr10-68013340-4	chr10	68013215	68013415	+	767.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359319, intron 6 of 11)	intron (NM_001359319, intron 6 of 11)	33745.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	3.95121286824425	4.07993682963809	3.84759295707499	3.81561946013658	4.26695883259336	4.07357269974944	4.12008863152769	3.9987301121518	0.551580852465282	0.188401907964638	0.486992724783917
Merged-chr11-61762116-4	chr11	61761975	61762175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164242)	promoter-TSS (NM_001164242)	13.0	NM_144806	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	7.16016480747747	7.35760155308768	6.77580671556286	6.65373507813785	7.3278365419942	7.29291918599949	6.81406496746234	6.82972582286347	0.111386560729797	0.65691465037998	0.856932610636793
Merged-chr2-11113446-3	chr2	11113341	11113541	+	730.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58941.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	3.24326202212576	3.08283298021318	3.40553608506181	3.26389292136136	3.24094693982302	3.16690334839229	3.23168379725703	3.35214404067235	-0.00983116614603775	0.985442274678692	0.994679311230532
Merged-chr1-120253958-4	chr1	120253872	120254072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085409, intron 2 of 5)	intron (NM_001085409, intron 2 of 5)	11308.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	5.35259694296668	5.70736664098084	5.64822178349768	6.17148120965312	5.59656489291192	5.53293113574587	5.87868571104149	5.83884703278792	-0.0997447870159241	0.744276175729386	0.899239415948819
Merged-chr8-11219515-3	chr8	11219403	11219603	+	983.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009931, intron 33 of 51)	intron (NM_009931, intron 33 of 51)	-93302.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	4.70673535353853	5.28684183100661	5.5795363019789	5.36115657579603	4.03136841634481	4.41859964921873	4.31858640659869	4.38695232799727	-2.13841771095176	8.60359355394234e-08	3.72956873067029e-06
Merged-chr1-156002012-4	chr1	156001888	156002088	+	905.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-28733.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	4.07256743517236	3.91114816296052	4.07317607991395	3.94681737139102	4.12699461879234	4.1970786176552	4.05557219934891	4.07071449621131	0.310579810538074	0.445419737384811	0.731479858046592
Merged-chr1-74964667-4	chr1	74964569	74964769	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12997.0	NM_010544	16147.0	Mm.439736	NM_010544	ENSMUSG00000006538	Ihh	HHG-2	Indian hedgehog	protein-coding	4.01703341453088	4.29465685075267	3.72656984008024	4.36512872360601	4.37728774385538	4.14144329347192	4.23694714933663	4.45377662654548	0.413925971468749	0.349098410383371	0.656765556493198
Merged-chr2-25240926-4	chr2	25240832	25241032	+	936.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1035.0	NM_026415	67859.0	Mm.46431	NM_026415	ENSMUSG00000036731	Cysrt1	2310002J15Rik|AV023762	cysteine rich tail 1	protein-coding	4.31984152858388	4.70336071862312	4.36592340653002	4.59718977505207	4.43567133635077	4.44846425990333	4.39010030236709	4.36323494840218	-0.244700669790561	0.512803160046953	0.776017039843318
Merged-chr7-107668734-4	chr7	107668640	107668840	+	959.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357437, intron 1 of 23)	intron (NM_001357437, intron 1 of 23)	3262.0	NM_001357436	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	4.71746293752217	4.93253655931754	4.67846531866174	5.38625375089741	4.79344674281832	4.38336557022852	4.69616122577675	4.63446907321801	-0.70321647263676	0.0688429628410245	0.280410908955871
Merged-chr12-102381839-4	chr12	102381694	102381894	+	959.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	MER63A|DNA|hAT-Blackjack	58019.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	4.78359258715984	4.82534297489503	5.11539274503078	4.80018227482373	4.83550917337617	4.88103922390806	4.72379964667873	4.66250005420615	-0.205540407414259	0.537953811306329	0.79126455418755
Merged-chr5-115542872-4	chr5	115542762	115542962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-16605.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	5.54931307801814	5.21398104434416	5.43748958336766	5.78632443997882	5.75441356544358	5.80214687414428	5.25504699759537	5.59916010320242	0.158603224331626	0.601344615571854	0.82708957558551
Merged-chr13-42052364-2	chr13	42052264	42052464	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 1 of 8)	CpG	343.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	5.2109729244165	5.84740781624619	5.31307950244441	5.47436447074809	5.71076129940195	5.61246430449178	5.49457624299759	5.72146178021071	0.254430557414174	0.381632191730758	0.683857755782781
Merged-chr10-84829238-3	chr10	84829140	84829340	+	932.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024918, intron 4 of 17)	ORR1E|LTR|ERVL-MaLR	-8908.0	NM_027689	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	3.72959516041003	3.44367697712432	4.06381974344757	3.89407222364136	3.34567636919683	3.39166002402258	3.33129840887005	3.20640067935147	-1.6369441845506	0.00280730082988287	0.0303402468524495
Merged-chr14-61311112-2	chr14	61311012	61311212	+	821.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_177337, exon 2 of 2)	exon (NM_177337, exon 2 of 2)	1359.0	NM_177337	219144.0	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	2.62161549338027	2.58531357299388	2.68200305953177	2.50280445408732	2.51514256801191	2.59628290660842	2.2676285530056	2.55772637501026	-0.571153395934308	0.422067133398562	0.714425732757276
Merged-chr10-91142907-3	chr10	91142824	91143024	+	721.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18961.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	2.92292940336814	2.97597385845976	2.98229179401855	3.12016347199644	2.76403006436856	2.75946216768988	2.91299684538448	2.86012186641154	-0.84015297451589	0.171970547390384	0.465252629537357
Merged-chr10-37141167-4	chr10	37141086	37141286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2260.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	7.80519443515454	7.61756864692397	7.54156093015308	7.3605562993553	7.6626303122436	8.0702000454711	7.88904870249653	7.32610351713652	0.23517946151502	0.273160857832146	0.584691065725456
Merged-chr5-147051065-3	chr5	147050961	147051161	+	972.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	25511.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	4.3488530923758	4.32181449561867	4.14189838530142	4.11923729232533	3.97868747114424	3.90028753295033	3.87841054765862	4.04584198883188	-0.734783908855793	0.080351822894917	0.307294347831361
Merged-chr2-113440874-4	chr2	113440767	113440967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285459)	promoter-TSS (NM_001285459)	-197.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	7.19869774348104	7.02987926205465	7.14166687641337	7.19661019348346	7.5092624901931	7.42188988416385	7.50876677545452	7.61612963914553	0.49777316061394	0.00462387882333737	0.0448335473050444
Merged-chr4-21755243-4	chr4	21755146	21755346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290420, intron 11 of 11)	intron (NM_001290420, intron 11 of 11)	11965.0	NM_029840	77032.0	Mm.87238	NM_029840	ENSMUSG00000028251	Tstd3	2610029I01Rik	thiosulfate sulfurtransferase (rhodanese)-like domain containing 3	protein-coding	5.04775566538193	5.44192611779983	5.33992738177973	5.27797441610826	5.287746490871	5.07432924777263	5.49961181293912	5.21499860891611	-0.010534725996384	0.971946458190337	0.989801515809858
Merged-chr14-48590615-1	chr14	48590515	48590715	+	635.0	f0_balb.idr	Intergenic	Intergenic	72119.0	NM_001360226	18424.0	Mm.134516	NM_144841	ENSMUSG00000021848	Otx2	E130306E05Rik	orthodenticle homeobox 2	protein-coding	2.43481655692147	2.40197544812077	2.55403884685586	2.82266980795347	1.99389839433747	2.09540228896711	2.07598776610665	2.15796450465635	-4.73866597743406	5.7649581949396e-05	0.00127833009145672
Merged-chr5-143731069-3	chr5	143730975	143731175	+	842.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029749, intron 1 of 17)	intron (NM_029749, intron 1 of 17)	1205.0	NM_029749	76800.0	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	3.72906589349101	3.34740723900025	3.51846694916573	3.86611384992484	3.66308309851265	3.51217185785678	3.71383039617755	3.62635993832517	-0.0335668201700078	0.94704168249072	0.981023220226121
Merged-chr18-70472055-2	chr18	70471948	70472148	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289649)	promoter-TSS (NM_001289649)	-406.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	4.08410969299343	4.19464778990969	4.23887943252704	4.28193804320831	4.52613641035844	4.63281731535695	4.48050929390157	4.74863262113715	0.895067248723312	0.016576752292704	0.112608956999654
Merged-chr12-3674230-3	chr12	3674130	3674330	+	559.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 8 of 17)	intron (NM_001162465, intron 8 of 17)	101246.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	3.39201064170015	3.60662076538752	3.76251011258565	3.24434833885082	3.88370164015502	3.56841633292302	3.60156887770574	3.19414681739394	0.260156120339863	0.638992297536401	0.847417204773176
Merged-chr2-72369494-4	chr2	72369378	72369578	+	885.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 5 of 19)	intron (NM_023057, intron 5 of 19)	83777.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	4.14701464589724	3.75838722743643	4.10169633754876	4.29320617970251	3.98391347170915	4.07576224740109	4.17320650663922	4.27351751856034	0.0677277918271726	0.875962638517829	0.953371302804582
Merged-chr7-110002228-4	chr7	110002127	110002327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037959, intron 2 of 2)	RLTR49|LTR|ERVK	4419.0	NR_037959	69781.0	Mm.440728	NR_037959	ENSMUSG00000101585	1600010M07Rik	-	RIKEN cDNA 1600010M07 gene	ncRNA	5.37326559292099	5.38597282256187	5.69920290922668	5.88076418964607	5.61733799622186	5.24311710189837	5.51923607415028	5.62148397989646	-0.179107781769671	0.546415935586549	0.796367024392978
Merged-chr4-102568776-3	chr4	102568691	102568891	+	892.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-1269.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.22142360932666	3.96460148961585	4.18161058967788	3.81313641223093	3.89578487262213	3.53737788837807	3.78545690566883	4.21932395537458	-0.444320054391237	0.355866820309326	0.662575056311733
Merged-chr4-6191062-4	chr4	6190965	6191165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026534)	promoter-TSS (NM_026534)	-40.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	7.69019330359883	7.55564321910056	7.51483998679685	7.79402296152925	7.7225341971141	7.73888891420691	8.08667702331879	7.5096661241848	0.172463658698993	0.372172182830861	0.676099595682082
Merged-chr5-69554335-2	chr5	69554235	69554435	+	864.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2589.0	NM_172711	231279.0	Mm.21105	NM_172711	ENSMUSG00000029208	Guf1	4631409J12|AA407526|EF-4	GUF1 homolog, GTPase	protein-coding	2.88374278853387	2.55269479522456	2.82077393031723	2.73924817818548	2.93054497150019	2.92881800807437	3.04447770897512	3.00049077244894	1.00218896473348	0.103077310514894	0.352686250789021
Merged-chr12-112844068-3	chr12	112843968	112844168	+	831.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-14547.0	NM_001359234	71963.0	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	3.55275668099329	3.63469243667279	3.25821247092973	3.48451241176282	3.73954466313149	3.43535202553273	3.4303642241135	3.60288560084214	0.243274041850315	0.631887454217787	0.843595114107732
Merged-chr7-81155170-4	chr7	81155064	81155264	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004184, intron 11 of 17)	intron (NM_001004184, intron 11 of 17)	40365.0	NM_001004184	434203.0	Mm.389909	NM_001004184	ENSMUSG00000025726	Slc28a1	Cnt1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	protein-coding	5.77845349767884	6.1241204363994	5.08843868828413	4.87833951042998	5.90321323469866	5.58284902859073	5.81711747124916	5.75190919216175	0.342682967773445	0.352738703732081	0.659679630621423
Merged-chr9-61681213-4	chr9	61681112	61681312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	233298.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	6.49799213116221	6.14635916789087	6.04398354816834	6.20390650448891	6.20679962028285	5.84428297248003	6.15725349884917	6.27860647853021	-0.143195314750467	0.559477741230081	0.803856805470648
Merged-chr1-135268288-4	chr1	135268174	135268374	+	876.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 4 of 9)	intron (NM_001159624, intron 4 of 9)	-9802.0	NM_007921	13710.0	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	3.98866553499422	4.40473854737299	4.77455498500147	4.24612773862191	4.37068052384131	4.22423658597507	4.35992561261939	4.28998678393943	-0.150210224463362	0.718636564221059	0.887629976798039
Merged-chr18-82867749-7	chr18	82867649	82867849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11852.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	4.6302431922851	5.2580552529837	5.04553307477498	4.64322443667752	5.17557489848431	5.04775835004743	4.7749735810234	4.83282892382046	0.117798986120209	0.74399796418105	0.899192296200682
Merged-chr13-23521929-3	chr13	23521828	23522028	+	935.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Ser-AGY|tRNA|tRNA	-9116.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	3.86185035492224	3.80909118772835	4.05744945514258	4.17656947006932	3.87622172575649	3.61912484898449	4.245074855197	4.05494569361706	-0.0680028852273826	0.884063905087682	0.956390337098447
Merged-chr5-64934441-3	chr5	64934349	64934549	+	887.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276445)	promoter-TSS (NM_001276445)	-891.0	NM_001276445	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	3.59557876270775	3.57787079419381	3.76564691544553	3.79695222779143	4.35598984177824	3.6516269768535	3.89866389383875	3.91332608655395	0.845163853921463	0.0805914246149468	0.307896356216376
Merged-chr9-48821626-4	chr9	48821529	48821729	+	949.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033324, intron 2 of 6)	intron (NM_001033324, intron 2 of 6)	14316.0	NM_001033324	235320.0	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	4.45077584962302	4.57745129776219	5.35020549953222	5.07219938635622	4.50406180459868	4.43045519542605	4.83815933030054	4.92681791212618	-0.466193344589699	0.253430181550383	0.564721751011949
Merged-chr17-79713786-2	chr17	79713686	79713886	+	825.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009994, exon 2 of 3)	exon (NM_009994, exon 2 of 3)	1255.0	NM_009994	13078.0	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	3.05254228973367	2.84008424764441	3.10759321614604	2.84338663126875	3.03920375579359	2.6926628043855	2.79913299091998	3.05126284588039	-0.220973048435267	0.726149772869162	0.891025770427008
Merged-chr6-136930960-4	chr6	136930832	136931032	+	946.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301308, intron 2 of 4)	intron (NM_001301308, intron 2 of 4)	8595.0	NM_001301303	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	4.91470074694169	4.62907291788425	4.95178910118199	4.93743223778087	5.34243749336406	4.76421922292365	5.37133610520595	5.1465346300737	0.613411018884387	0.0660903787881849	0.273821133397219
Merged-chr5-63828940-4	chr5	63828844	63829044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	16449.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	6.24756235177105	6.44756072716367	6.36346340133124	6.55453156455113	6.54644443735437	6.57549392790088	6.54764856400129	6.34050672564183	0.125452706691125	0.565059126279631	0.807206529642693
Merged-chr12-55480989-4	chr12	55480937	55481137	+	917.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11610.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	3.16692812919331	3.39626885809936	2.93600177212893	2.60649359912186	2.98062221224436	3.11061996520345	2.64937038992361	2.57571159990186	-0.903239341116236	0.226289880563332	0.534852645147516
Merged-chr6-134606739-2	chr6	134606639	134606839	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	25749.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	3.25749110813915	3.31343671320078	3.59357580027321	3.28282750536668	3.48293013012664	3.60703479582138	3.42317576076031	3.48910091729771	0.4747390673601	0.348572673678203	0.656292768402628
Merged-chr3-90245466-4	chr3	90245373	90245573	+	953.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1961.0	NM_030080	78284.0	Mm.299952	NM_030080	ENSMUSG00000027938	Creb3l4	1700012K17Rik|5330432F22Rik|AIBZIP|AV040530|AV258827|CREB4|JAL|TISP40|acre1	cAMP responsive element binding protein 3-like 4	protein-coding	4.65171087054152	4.86880871611797	4.32272612091812	4.72684569805478	5.17041298239794	4.90763644792697	4.7864197340391	5.00997371821967	0.64393416247544	0.0663531417047409	0.274574168560069
Merged-chr15-98699637-4	chr15	98699553	98699753	+	968.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8574.0	NM_153518	105833.0	Mm.26205	NM_153518	ENSMUSG00000003354	Ccdc65	4933417K04Rik|AI428139|AU020178|NYD-SP28	coiled-coil domain containing 65	protein-coding	4.84747678531544	4.99843070018812	4.6556962465082	4.63608443380733	4.8949947843402	4.61015029495841	4.92708821650778	4.91449809177869	0.127744987861469	0.707383713653909	0.882444677286559
Merged-chr13-18781432-4	chr13	18781336	18781536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 4 of 28)	intron (NM_172120, intron 4 of 28)	64144.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	6.14956907012302	6.20604337606974	6.54607615450813	6.71845688672252	6.18998690544298	6.34854578012433	6.36626523770678	6.2668981872774	-0.227866098240781	0.3534519778195	0.660273623806948
Merged-chr12-108644694-4	chr12	108644533	108644733	+	724.075012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	8880.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	3.59808457031294	3.65070823025786	3.54175384644576	3.42131528785303	3.63174218447551	3.87542110699068	3.8331014334612	3.70312098738021	0.662228759860197	0.156896593892061	0.443058900922121
Merged-chr7-4445664-4	chr7	4445574	4445774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290409)	promoter-TSS (NM_001290409)	-17.0	NM_001290411	108841.0	Mm.413106	NM_175372	ENSMUSG00000008435	Rdh13	8430425D21Rik	retinol dehydrogenase 13 (all-trans and 9-cis)	protein-coding	6.5117023286273	6.48627592217938	6.49617624802554	6.57223166428563	6.52004783751677	6.53098633892499	6.55943742419737	6.60378153567391	0.0449729644612774	0.825053877399124	0.932930565831813
Merged-chr9-37517707-3	chr9	37517602	37517802	+	913.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146222, intron 2 of 3)	intron (NM_146222, intron 2 of 3)	-10387.0	NR_136939	69524.0	Mm.41751	NM_027102	ENSMUSG00000001946	Esam	2310008D05Rik|Esam1|W117m	endothelial cell-specific adhesion molecule	protein-coding	3.65207905467201	3.32372598447274	3.65263618717831	3.51887934056316	3.4064683216645	3.61795626346531	3.19320601346994	3.20183341357993	-0.596281040582727	0.267481963111102	0.579177784876944
Merged-chr1-165644558-4	chr1	165644459	165644659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10018.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	6.20898874468503	6.37883953262306	6.82744000076831	6.82157306672834	6.11807633109696	6.16690504841306	6.38414121439198	6.30385419379349	-0.524253241493259	0.0364140035642321	0.189772467396286
Merged-chr1-172478185-4	chr1	172478089	172478289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029612, exon 4 of 4)	exon (NM_029612, exon 4 of 4)	2829.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	5.17862699959582	5.20975874259216	5.37499694120882	5.58490335457505	5.61484732031276	5.42530050849338	5.71067985467798	5.71308518743875	0.439269865624214	0.128207187718687	0.398448212663338
Merged-chr9-16313465-4	chr9	16313357	16313557	+	969.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	ID_B1|SINE|B4	64774.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	5.17348338404785	4.99380049827225	5.23337153028942	5.28511400404181	4.8693275693188	5.11615487920097	4.88208164988132	4.90181708902728	-0.471261303327765	0.131017994365501	0.402938651772802
Merged-chr7-142340262-4	chr7	142340167	142340367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177265, intron 3 of 3)	intron (NM_177265, intron 3 of 3)	31992.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	6.05345947562835	6.49700724877389	6.46295644843674	6.10065476338274	6.28427381798448	6.14113361124218	6.0873917792636	5.9827112695999	-0.231215836974133	0.350565281098402	0.658165288155673
Merged-chr7-105396348-3	chr7	105396238	105396438	+	737.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242363, intron 1 of 12)	L2c|LINE|L2	3716.0	NM_001242364	74349.0	Mm.30254	NM_199009	ENSMUSG00000044465	Fam160a2	4632419K20Rik|6530415H11Rik|FHIP	family with sequence similarity 160, member A2	protein-coding	3.58351892481416	3.6646284149149	3.58401502390755	3.48255604410118	3.85607731813813	3.33260298118826	3.34200137389086	3.63371282740007	-0.0129997862759563	0.980003696157192	0.992772119265666
Merged-chr2-132101014-4	chr2	132100912	132101112	+	905.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355431, intron 2 of 6)	RLTR19-int|LTR|ERVK	44096.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	4.81263033639965	4.6557497063695	4.59724100315982	4.28602766532084	4.72014754680662	4.41668743963673	4.495491177882	4.5132154536402	-0.0795986778617208	0.834047840018642	0.93666384570592
Merged-chr19-6015422-6	chr19	6015410	6015610	+	787.896851	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007600)	promoter-TSS (NM_007600)	-263.0	NM_007600	12333.0	Mm.6221	NM_007600	ENSMUSG00000024942	Capn1	Capa-1|Capa1|mu-calpin	calpain 1	protein-coding	3.5795272573574	3.396172393101	3.63306927318596	3.31714184917334	3.2746344028731	3.75270518740769	3.5653647450291	3.90924938034838	0.5180802260802	0.321892032450122	0.633364284112432
Merged-chr4-133660212-2	chr4	133660095	133660295	+	947.25	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	12452.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	5.16039750232572	5.25021277971649	4.95208887216989	4.57973520041562	4.53847021976596	4.71104445550239	4.21295782120646	4.57335872200319	-1.01492882888342	0.00946524999462094	0.0759007629033907
Merged-chr17-46453529-3	chr17	46453424	46453624	+	894.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162864, intron 13 of 14)	intron (NM_001162864, intron 13 of 14)	-15047.0	NM_144856	108114.0	Mm.387538	NM_144856	ENSMUSG00000067144	Slc22a7	NLT|OAT2	solute carrier family 22 (organic anion transporter), member 7	protein-coding	3.36437100669008	3.6985123394182	3.85573137707054	3.68860634176627	3.61033483190173	3.66596268561562	3.79301551804033	3.65798262694316	0.0496979145713981	0.917938038766034	0.969760089182615
Merged-chr2-145807443-2	chr2	145807343	145807543	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	21327.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	3.02554819809746	3.01851100981311	3.08432451455876	2.74155758172907	2.62620796808549	3.01113078346335	3.1269204353825	3.08257917287864	0.018755542314672	0.976598686383961	0.991659075838454
Merged-chr5-125409037-4	chr5	125408933	125409133	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Asp-GAY|tRNA|tRNA	-19016.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	5.03571046709114	5.69661337611292	4.85858433625873	4.62089897233739	4.88323410717265	4.83329604211041	4.87264037985088	4.96492237737325	-0.441911763453959	0.257088965644657	0.568814630742628
Merged-chr16-52059737-4	chr16	52059656	52059856	+	874.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	28207.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	3.76087646922503	4.20395225252135	3.88106762841685	3.97894318547239	4.59908767447009	4.31376389013184	4.37524268474204	4.18441822907629	1.03026124849129	0.0141623839727922	0.100745985288764
Merged-chr8-35387130-4	chr8	35387030	35387230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177741, exon 2 of 2)	3' UTR (NM_177741, exon 2 of 2)	11389.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	5.86555921703142	6.18055740892184	6.37226372910636	6.40541487144576	6.2647875340238	6.23562990451007	6.35678381465244	6.49930461074281	0.158147019783832	0.514008970247647	0.77683598728703
Merged-chr11-103400214-4	chr11	103400103	103400303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 2 of 11)	L1MB7|LINE|L1	12461.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	6.80062127562682	7.29816341149136	6.64728074088646	6.67025035573674	7.25482031009486	7.30869164062378	6.72299663362887	7.01039760443909	0.298733941590312	0.222405078350246	0.530444011254932
Merged-chr6-127266216-4	chr6	127266122	127266322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41745.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	7.17162650105861	6.9228169703288	7.06755180326127	7.55461588148687	7.20394940413763	6.95906995575041	7.13688637187461	7.15657314739799	-0.13163575736404	0.54578977867154	0.795983499079244
Merged-chr3-88149198-4	chr3	88149105	88149305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	6833.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	6.023460941522	5.8882587273775	5.63491843492138	5.78942781365101	5.9226212223065	6.15663836636608	6.1316416716017	6.06141664311816	0.359395269503308	0.143177997041439	0.421325166747956
Merged-chr4-33290304-4	chr4	33290196	33290396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20015.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	6.54242010866463	6.74947043058429	6.74447604322598	6.47661352109011	6.93576680996718	6.84715923108284	6.73825297407071	6.41589097007288	0.184364391986298	0.406825655510538	0.703243153546509
Merged-chr13-35740334-3	chr13	35740246	35740446	+	680.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009881, intron 3 of 9)	intron (NM_009881, intron 3 of 9)	-1056.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	3.80488353244126	3.94081605746803	3.90360080498153	3.495253754701	4.01588890421917	3.92602115816582	3.62891867152797	3.69715372300136	0.1342213455037	0.780186438927027	0.914348744461444
Merged-chr14-120478266-4	chr14	120478169	120478369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029519)	promoter-TSS (NM_029519)	-192.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	8.72077052548216	8.71849293608451	8.7221379295507	8.61350302399777	8.91802696926128	8.80220748989052	8.98407207158352	8.67755718737167	0.200890107114374	0.177691036845888	0.473241965060196
Merged-chr9-14807437-4	chr9	14807331	14807531	+	732.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310728, intron 9 of 18)	MTC|LTR|ERVL-MaLR	22777.0	NM_018736	17535.0	Mm.149071	NM_018736	ENSMUSG00000031928	Mre11a	Mre11|Mre11b	MRE11A homolog A, double strand break repair nuclease	protein-coding	3.97142031545722	4.2168653918997	3.97197209322918	4.28960095043489	4.23383817013489	3.92584603981224	4.35137722036862	4.06992388465586	0.066067360778353	0.876724337677893	0.953772205468137
Merged-chr12-84762677-4	chr12	84762585	84762785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 2 of 3)	intron (NM_023409, intron 2 of 3)	10427.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	7.39626466916397	7.34105052347345	6.86379792800949	7.59751755808995	7.39579278713814	6.75254195100008	7.02827008449035	7.04651894388961	-0.339289672686108	0.15485976740979	0.440269481011378
Merged-chr8-64896966-4	chr8	64896866	64897066	+	825.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-47042.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	4.22694094794032	4.13893407447951	4.22757716601201	4.92957276847756	4.06876448066027	4.20464451720726	4.34083969037422	4.27086353873418	-0.540283003030959	0.229480020284959	0.53853016266734
Merged-chr11-90231803-4	chr11	90231696	90231896	+	974.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER103C|DNA|hAT-Charlie	-17680.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	4.84739872496067	5.55162771261364	5.35267145181595	5.38079615730482	5.35708604163332	5.02764536380067	4.82568363653455	5.10492697913502	-0.389543436557984	0.249924961368797	0.561038502121535
Merged-chr10-120848922-3	chr10	120848822	120849022	+	968.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 4 of 6)	intron (NM_177092, intron 4 of 6)	-8707.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	4.48998216998675	4.22058717727999	4.90714865119941	5.00772640994599	4.16995138208199	4.53692490427964	3.98213333313772	4.26426064543857	-1.04533234412062	0.0165676673093577	0.112557983336143
Merged-chr8-125640331-4	chr8	125640243	125640443	+	784.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-29475.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	3.91036019535872	3.9939334627522	3.75535958621702	3.63015535805584	3.90542602317746	3.92978546651469	3.98735419317984	3.95647844121479	0.355627712635862	0.420412489265865	0.713274332060183
Merged-chr7-4940354-4	chr7	4940264	4940464	+	951.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173008, intron 12 of 13)	intron (NM_173008, intron 12 of 13)	14520.0	NM_173008	269855.0	Mm.44190	NM_173008	ENSMUSG00000035279	Ssc5d	A430110N23Rik|S5D-SRCRB	scavenger receptor cysteine rich family, 5 domains	protein-coding	4.71190187670496	4.79194723636419	4.5267587777124	4.9849958722001	5.11421998361404	5.84318141476881	4.92626193529435	5.14762040309154	0.996358667630107	0.00796003603521649	0.0669645910590562
Merged-chr9-48388638-3	chr9	48388542	48388742	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172921, intron 2 of 8)	RLTR19D|LTR|ERVK	26601.0	NM_172921	244853.0	Mm.325522	NM_172921	ENSMUSG00000044229	Nxpe4	C130036J11|D930028F11Rik|Fam55d	neurexophilin and PC-esterase domain family, member 4	protein-coding	3.67529826885267	3.39746677536146	3.60139468350366	2.69385389389175	5.07613455449746	4.90365565992157	4.94924471614608	5.42601362402276	5.3419484045852	5.14524950061615e-20	1.75231442203041e-17
Merged-chr9-57836954-4	chr9	57836856	57837056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2722.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	7.97817475046242	8.2639401002121	8.02068705252182	7.7852661339947	8.15010648327235	8.23817077279245	8.23182686844759	8.01533122704897	0.18434329527766	0.297062824084342	0.609144813191385
Merged-chr6-71632286-3	chr6	71632186	71632386	+	954.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362200, intron 1 of 25)	CpG	400.0	NM_173001	104263.0	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	4.58261245983171	4.46329339539041	5.11993822476597	4.81767977504754	4.63329723401728	4.4861136445823	4.71793899418314	4.62147505114963	-0.32237688497572	0.382771698784806	0.68472748800713
Merged-chr8-84686217-4	chr8	84686133	84686333	+	869.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025788, intron 1 of 5)	intron (NM_025788, intron 1 of 5)	1629.0	NM_025788	66830.0	Mm.289698	NM_025788	ENSMUSG00000001910	Nacc1	2010001H03Rik|4930511N13Rik|Btbd14b|Nac1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	protein-coding	4.10301483465786	4.08877191207191	4.14787219116266	4.13986319485391	3.89174855187207	3.8003281640995	3.99332882675548	4.10111658611683	-0.461623562125831	0.271658193047557	0.583251143082263
Merged-chr14-120832452-2	chr14	120832348	120832548	+	899.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-78746.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	4.47602015591854	3.91169813737429	4.43668001502783	4.63654692147155	4.29753234618833	4.43649532233544	4.45586667131882	4.21250489375762	-0.119605369387949	0.775271756936609	0.912320643528997
Merged-chr11-62103642-4	chr11	62103548	62103748	+	911.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029936, intron 1 of 12)	MLT1G3|LTR|ERVL-MaLR	26624.0	NM_001029936	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	4.98876102870561	4.79249529119708	4.95695535960228	5.11519448617369	4.53022581417939	4.34970150526816	4.71883194370514	5.10872531189719	-0.550690832548404	0.135094929870744	0.409222998266647
Merged-chr7-28437142-4	chr7	28437031	28437231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022024)	promoter-TSS (NM_022024)	-316.0	NM_022024	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	7.14839685377552	7.3165893809987	7.30499431391062	7.19336627759626	7.27864222869293	7.50256032923797	7.51335042689859	7.24662906042761	0.196783170384403	0.281610316256037	0.593713087373404
Merged-chr4-137603946-4	chr4	137603852	137604052	+	898.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355588, intron 1 of 26)	intron (NM_001355588, intron 1 of 26)	9780.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	4.32635943386098	3.99050292019174	3.91148588586318	4.25522308724616	4.36603858861746	3.85720375301362	4.22647646287303	4.01381361276256	0.00719844181590884	0.986941271019907	0.995239569128295
Merged-chr5-105415684-4	chr5	105415601	105415801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033550)	promoter-TSS (NM_001033550)	-74.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	8.09180710906245	7.99725199564598	7.80726596631779	7.8422703230593	7.9806888076935	8.14627753897314	8.18433475940324	7.54174820190332	0.0640494954076318	0.743887930830464	0.899135645512432
Merged-chr9-44965613-4	chr9	44965498	44965698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346698)	promoter-TSS (NM_001346698)	2.0	NM_001346698	140630.0	Mm.215069	NM_145400	ENSMUSG00000059890	Ube4a	4732444G18Rik|9930123J21Rik|UFD2b	ubiquitination factor E4A	protein-coding	7.0945009690705	7.26621093132787	6.35403703089726	6.88220424800558	7.2644107307292	7.2369523803641	7.04827986649947	7.13659090748935	0.318455917934332	0.178864261832826	0.474874274263286
Merged-chr7-139388900-4	chr7	139388828	139389028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127363)	promoter-TSS (NM_001127363)	-181.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	9.23148823784314	9.45525088996309	9.29603928348414	9.226553282611	9.36772244085985	9.55106146814592	9.70144689839434	9.1896898965694	0.197793121063846	0.227409816259208	0.536093373236874
Merged-chr14-105221249-2	chr14	105221149	105221349	+	984.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37424.0	NM_029561	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	2.81367074818466	3.01619205328154	3.13048550682564	2.9697714076688	2.88046457252659	3.05910059428639	3.00206068663601	3.3352529709318	0.368735874348885	0.537136438622685	0.790964159230488
Merged-chr15-67992651-1	chr15	67992551	67992751	+	873.8333130000001	f0_balb.idr	Intergenic	MTB|LTR|ERVL-MaLR	266205.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	3.89652946896598	4.09300854456074	3.80699492715981	3.92007639184161	2.94367578413143	3.27168463233877	3.47754549159232	3.29809663683035	-2.48008133708712	3.08978182053184e-05	0.000745612948534241
Merged-chr2-25366178-3	chr2	25366069	25366269	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033293)	promoter-TSS (NM_001033293)	-506.0	NM_001033293	227620.0	Mm.33797	NM_001033293	ENSMUSG00000026956	Uap1l1	5730445F03Rik	UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	protein-coding	3.39655567710408	3.17336204339325	3.15276300965423	3.26251449724929	3.71293787848558	3.39359057277666	3.32759833435412	3.60015489780806	0.947809488244322	0.0706587390703504	0.284985176126953
Merged-chr3-118064144-2	chr3	118064044	118064244	+	965.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-195208.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	3.35125057222678	3.28816801588456	3.56064271443794	3.55162951738775	3.55642536030171	3.13942205602196	3.28211083798841	3.40560243871835	-0.294264991728185	0.587548863632276	0.819278583121838
Merged-chr15-73090371-4	chr15	73090288	73090488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053068)	promoter-TSS (NM_053068)	-24.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	7.17227038756446	7.77799946498671	6.70233715925663	7.07079950002018	7.69964138914151	7.90158449570612	7.68657635128262	7.58120215491565	0.634681770072281	0.0102721367688673	0.0805065429499237
Merged-chr17-85019109-4	chr17	85018991	85019191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159497, intron 5 of 5)	intron (NM_001159497, intron 5 of 5)	-9256.0	NM_009205	20532.0	Mm.227176	NM_009205	ENSMUSG00000024131	Slc3a1	D2H|NBAT|NTAA|RBAT	solute carrier family 3, member 1	protein-coding	6.880859245737	6.96855318570476	6.68023549554639	6.91095432562873	6.64048833047274	7.07152052479519	6.80674225496394	6.91649494968589	-0.0147557698107434	0.943338379399817	0.97953264729624
Merged-chr2-90542849-4	chr2	90542747	90542947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	37800.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	8.38339176286977	8.58007962623285	8.20655500395668	8.18139478516929	8.20272435995676	8.316596997438	8.19734352856983	8.02814596318707	-0.197856764561989	0.250900991573628	0.562187628640201
Merged-chr4-119950410-3	chr4	119950305	119950505	+	680.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	135727.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	3.48713193441625	3.21072849230586	3.38866968398348	3.29711179682806	2.9021924894016	3.00191405895327	3.21182124645358	3.27942249540949	-0.95025668466487	0.10125199821753	0.349261400219328
Merged-chr9-70833793-3	chr9	70833691	70833891	+	723.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	101017.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	3.62723623669565	3.83556117258818	3.92321173783476	3.8149422926268	3.47656286572544	3.85330673918641	3.37461221128433	3.67988066282202	-0.625435896469784	0.203105207355356	0.505784051861138
Merged-chr9-63731605-4	chr9	63731495	63731695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	26399.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	7.55560169336621	7.51714498045417	7.74335789958191	7.86422080252047	7.52836094829618	7.83088331328587	7.80376152648256	7.62273136549506	0.0151615296921651	0.934480705362698	0.976356212091203
Merged-chr2-145870398-1	chr2	145870298	145870498	+	799.25	f0_balb.idr	intron (NM_028724, intron 9 of 12)	intron (NM_028724, intron 9 of 12)	-32843.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	3.59536865118006	3.72598283827955	3.49248813431535	3.90868849606993	2.99820106824695	3.00177398577429	3.24608962173312	3.49049592727699	-1.83328890633633	0.00223643045482156	0.0254780543123789
Merged-chr4-32249127-4	chr4	32249039	32249239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168296.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	6.14282447889065	5.90375941301906	6.43338870162569	6.6205914662836	5.73915101414	5.56252088524974	5.60258737340341	5.56847459876837	-1.09881620370599	8.06106571768266e-05	0.00169256223220925
Merged-chr7-101620575-2	chr7	101620475	101620675	+	828.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39414.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	3.04218593627428	2.98776410685489	3.04257753975732	3.00720296168421	3.16567497349501	2.89372520483779	2.91235661750936	2.85585513143256	-0.197976155788407	0.739402525028722	0.897284218525646
Merged-chr12-12289824-4	chr12	12289729	12289929	+	988.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	27690.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	5.18473151997219	4.75792123760164	5.30768547065626	4.9977971415261	5.53643260558537	5.22706900938734	5.16006670555222	5.46721415960547	0.547291945865699	0.0818995269516366	0.310576794293582
Merged-chr13-58543379-4	chr13	58543292	58543492	+	936.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67485.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	4.36318036344962	4.2633956386076	4.11689120313777	4.40558842174864	4.53485309178756	4.58150450963365	4.85106119073648	4.48942237351775	0.720213645580461	0.0556611858192698	0.246922270048317
Merged-chr10-117710763-4	chr10	117710661	117710861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001288586)	promoter-TSS (NM_001288586)	-3.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	7.79892013448797	8.0705942638212	8.01894815705031	7.92900460910186	8.01056087871555	8.12065266336105	8.17195044378279	8.03348927191933	0.161060259907588	0.317533853557808	0.629487318267407
Merged-chr13-119631893-4	chr13	119631792	119631992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020279, intron 1 of 2)	CpG	8073.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	6.30179306170054	6.37810243090942	6.2836152713357	6.37496536189771	6.78611877787953	6.33909117874427	6.63214706658185	6.42567364089492	0.338773134758423	0.128762442103543	0.399267343345159
Merged-chr8-111313053-3	chr8	111312964	111313164	+	676.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029005, intron 10 of 10)	intron (NM_029005, intron 10 of 10)	-12842.0	NM_146218	234736.0	Mm.334816	NM_146218	ENSMUSG00000033596	Rfwd3	BC027246	ring finger and WD repeat domain 3	protein-coding	3.29393663689274	3.30351465482805	3.29440118935744	3.15948009161902	2.98437106634308	2.96175922680946	3.1711728672178	3.18139239469384	-0.730068920159278	0.197580464668177	0.49895982014778
Merged-chr12-12270692-4	chr12	12270572	12270772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	8533.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	7.39640133136878	7.93894278560779	7.40777292985943	7.26173461096493	7.81482806825568	7.87147131880159	7.37101857371441	7.3301796011987	0.127096035803235	0.584314063938053	0.817562205564865
Merged-chr14-54701521-4	chr14	54701418	54701618	+	700.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10656.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	3.45995163442799	3.39721690194859	3.57769725323765	3.38838839177631	4.22168160593846	3.75190244532568	3.76810687426979	3.4586320008575	1.19153737362059	0.018789335763689	0.12275820153453
Merged-chr12-3237385-4	chr12	3237278	3237478	+	992.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015551, exon 2 of 7)	non-coding (NR_015551, exon 2 of 7)	1587.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	4.74124797189381	4.86632038942233	4.62333781351662	4.5890565693719	4.84890550047314	4.756216194828	4.60238802811579	4.97809606894095	0.217462761194198	0.523887561527075	0.782647016014066
Merged-chr4-156210145-4	chr4	156210059	156210259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-5768.0	NM_172417	74183.0	Mm.431343	NM_172417	ENSMUSG00000078486	Perm1	2310042D19Rik	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding	5.20694104469809	5.74359118950724	5.43256979136179	5.63144956996098	5.503948524424	5.54848153947933	5.78171112788379	5.45788177986906	0.0767785399729536	0.789122623625913	0.91835324030065
Merged-chr11-119057020-4	chr11	119056858	119057058	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16045.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	4.33501633807607	4.20562533689405	3.85529719584036	3.90976153228645	3.81468688467812	4.02974297814283	3.73051113360938	3.74275012710448	-0.701316211133387	0.126834577788228	0.396119451203907
Merged-chr2-148698841-4	chr2	148698750	148698950	+	850.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019632, intron 9 of 10)	intron (NM_019632, intron 9 of 10)	17730.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	3.72139241826538	3.82116029792845	3.93097279250207	4.00783347427763	3.84732385796101	3.78086769604283	4.09193173677349	4.10782828382716	0.218210849963901	0.624263792588833	0.83935232045714
Merged-chr9-96365606-4	chr9	96365517	96365717	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1186.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	4.29927815093214	4.13286874593687	5.06130556907818	4.75041630986099	5.3182263320055	4.63525796885478	4.97441748190696	5.02718945505273	0.810205227939438	0.0536561178191087	0.241777780687879
Merged-chr2-33406829-2	chr2	33406729	33406929	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001276332, exon 2 of 2)	3' UTR (NM_001276332, exon 2 of 2)	24495.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	3.17586313316686	2.85289258771491	3.36787267895531	3.05489138916189	2.99269714161304	2.70493420884334	2.67069421610253	2.74974902514986	-1.46684964853434	0.0331821831089991	0.178943451133832
Merged-chr4-55514906-4	chr4	55514806	55515006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	17569.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	6.29300376405174	6.87981282031061	6.62638164325654	6.4474659356889	6.24189741987811	6.67369505409798	6.82881081681233	6.72481648555083	0.0706674543462286	0.775816928892201	0.912527734959236
Merged-chr8-77421267-4	chr8	77421157	77421357	+	995.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 5 of 22)	intron (NM_030113, intron 5 of 22)	-95799.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	4.88415247200962	4.78064987523686	4.81713784025896	5.03157552525963	4.57735905789019	4.27516429316648	4.48228584320873	4.66635794354216	-0.811053674631344	0.0226585267616983	0.139047441707985
Merged-chr9-14751947-8	chr9	14751850	14752050	+	904.7152710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010242, exon 1 of 1)	exon (NM_010242, exon 1 of 1)	172.0	NM_010242	14345.0	Mm.63450	NM_010242	ENSMUSG00000049307	Fut4	AI451562|CD15|FAL|FucT-IV|LeX|SSEA-1|Ssea1	fucosyltransferase 4	protein-coding	5.31084592649067	4.60577208807287	4.98982923095154	5.06398428009464	4.81847577904034	4.77840817732605	4.66777857354091	5.3329977762913	-0.177088391704029	0.63329999114257	0.844577971437561
Merged-chr10-69213124-4	chr10	69213027	69213227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331193)	promoter-TSS (NM_001331193)	-29.0	NM_001331193	320700.0	Mm.396529	NM_001331193	ENSMUSG00000090622	A930033H14Rik	-	RIKEN cDNA A930033H14 gene	protein-coding	7.64153953266095	7.39353619139075	7.28865994961636	7.45554136334856	7.25420660944971	7.36526542479771	7.57256429337473	7.3154774248816	-0.0960744305207687	0.605946738658765	0.829228902601123
Merged-chr3-94879934-3	chr3	94879842	94880042	+	997.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172683, exon 19 of 19)	exon (NM_172683, exon 19 of 19)	7016.0	NM_008945	19172.0	Mm.368	NM_008945	ENSMUSG00000005779	Psmb4	Pros-27	proteasome (prosome, macropain) subunit, beta type 4	protein-coding	3.59241794439422	4.35663334053523	4.33280723135222	3.92707151119836	3.89945392274807	3.77737471756313	4.15409603467249	3.98816187875607	-0.330661679861636	0.494652017765233	0.765224301099017
Merged-chr11-23416725-3	chr11	23416627	23416827	+	950.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190401, intron 35 of 79)	L1MC4|LINE|L1	81312.0	NM_001290655	268390.0	Mm.13148	NM_172391	ENSMUSG00000020288	Ahsa2	-	AHA1, activator of heat shock protein ATPase 2	protein-coding	3.55270644853935	3.92039461769231	3.71472054193308	3.86883444898941	3.61334779029985	3.72592097906255	3.42166014090674	3.55132090447338	-0.613356004048996	0.208397577096786	0.512684369034825
Merged-chr5-96980253-4	chr5	96980147	96980347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17442.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	7.22978270744889	7.31963293774456	7.29488394684846	7.63462794092987	7.2361916382402	7.41884985886108	7.00740626971248	6.75494113741373	-0.352552808324109	0.108933537320747	0.364369372789167
Merged-chr6-124493520-2	chr6	124493420	124493620	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181344, intron 1 of 5)	intron (NM_181344, intron 1 of 5)	407.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	3.99192419512287	3.48830764584679	4.08471223021588	3.60394211270342	3.96027507542877	4.11734470370208	3.92682849061142	4.28657449886718	0.753690814611549	0.109827737803652	0.365984482636991
Merged-chr2-70986967-4	chr2	70986865	70987065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 3 of 9)	(CA)n|Simple_repeat|Simple_repeat	31409.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	5.27966637727853	5.12507608105255	5.34273295305608	5.19718660681521	5.5272653093978	5.73723059145378	5.40341409003631	5.63488014715627	0.608100468831818	0.028596493866863	0.162344061010483
Merged-chr4-45407784-4	chr4	45407694	45407894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009949, intron 1 of 2)	intron (NM_001009949, intron 1 of 2)	972.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	5.96681217898485	6.48486090643064	6.65732679933753	6.50617489676068	6.41508642603201	6.57962663513601	6.35341553065334	6.34542078908242	-0.013515027995937	0.955215435767151	0.984075265351039
Merged-chr16-95708350-4	chr16	95708245	95708445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011809, intron 2 of 9)	intron (NM_011809, intron 2 of 9)	5938.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	8.41122262504318	8.53291587930122	8.52789042341144	8.53898030929175	8.50647166102035	8.57445755727926	8.3416431431236	8.46858867702575	-0.0380108913488353	0.798122459025238	0.921955533143952
Merged-chr14-45220500-7	chr14	45220349	45220549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027518, intron 1 of 6)	CpG	732.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	4.846922984843	4.78149903461655	4.65868572765542	4.33409923611999	4.51489174112388	4.66411956591497	5.01741169522932	5.12614722266705	0.403352505719845	0.287690955772163	0.599547783367201
Merged-chr10-121033469-3	chr10	121033328	121033528	+	779.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011915)	promoter-TSS (NM_011915)	-576.0	NM_011915	24117.0	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding	3.41164019122522	3.38389521769232	3.51830141932419	3.55491242374473	3.17928535166384	3.34618491316997	3.22363735066032	3.56609902385012	-0.495314335652564	0.348929560894198	0.65661486357933
Merged-chr9-72968572-4	chr9	72968403	72968603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163725, intron 4 of 6)	intron (NM_001163725, intron 4 of 6)	9718.0	NM_001163725	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	6.56760104943137	6.7426580279151	6.26371141784855	6.6389120863404	6.54847056468876	6.67947968611228	6.56655954454606	6.44729898311054	-0.0179533500895747	0.934753101781693	0.97635719558922
Merged-chr17-3114645-1	chr17	3114545	3114745	+	1000.0	f0_c57.idr	promoter-TSS (NM_134123)	promoter-TSS (NM_134123)	-327.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	6.17541237481772	6.53982283805077	6.45495352042786	6.18992822659187	6.36788401551526	6.52665640515356	6.05952310193639	6.59177451135291	0.083673158899488	0.729565259948299	0.892723493860409
Merged-chr10-8196490-3	chr10	8196395	8196595	+	859.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-240372.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	3.41727811345474	3.4331838151903	3.24184658695821	3.5110234468055	3.63884636854265	3.35256738860621	3.29165152930623	3.3599922975688	0.0532040517569969	0.919448705260118	0.970308092934814
Merged-chr2-48924967-4	chr2	48924876	48925076	+	990.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149356, intron 8 of 13)	intron (NR_149356, intron 8 of 13)	24291.0	NM_001177313	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	5.26729972269618	5.26838050779538	5.26819598532201	5.70997992807377	5.40075945994558	5.12577410829964	5.21030680786397	5.77918419429737	-0.0106847619176206	0.973670665989945	0.990570637473211
Merged-chr2-4593642-4	chr2	4593530	4593730	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 5 of 11)	intron (NM_001177844, intron 5 of 11)	33876.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	5.14638133738025	4.94400246126626	5.0086160736248	5.33158906567703	5.38810381952086	5.61016690008761	5.30376234105369	4.80845513242406	0.331385791549989	0.323542931937454	0.635032741000305
Merged-chr17-25015951-4	chr17	25015849	25016049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020608)	promoter-TSS (NM_020608)	-137.0	NM_134126	106633.0	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	8.73241517814574	8.71479738331029	8.29860437005293	8.40353827113509	8.54246779593195	8.66411461630845	8.45199174275538	8.36618998473218	-0.0480771753276162	0.782649569517017	0.91529005173258
Merged-chr1-152634536-2	chr1	152634436	152634636	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346118, intron 2 of 18)	intron (NM_001346118, intron 2 of 18)	-9319.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	3.30690187630522	3.18854144520989	3.46452326152437	3.10190810654241	3.41641838849045	3.2392119986912	3.3482559859639	2.99267542703255	-0.000364293505006965	0.9994853063756	0.999758432962781
Merged-chr14-54360991-7	chr14	54360900	54361100	+	981.0285640000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026936, intron 1 of 9)	CpG	159.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	5.26009322467847	4.93170823771446	4.7874207292368	5.38578895006192	5.47882297825503	5.40429349328891	5.0033353147991	5.60141180370614	0.475288760346642	0.158616871274207	0.445618498595942
Merged-chr11-44519168-9	chr11	44519198	44519398	+	990.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166553)	promoter-TSS (NM_001166553)	-79.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	4.39483548596602	4.59389561948771	4.5630934566775	4.3827703823373	4.80246442197451	4.61260863538816	4.33101246174283	4.34731665652233	0.154273088310551	0.683402380075733	0.870319509257328
Merged-chr14-103477404-4	chr14	103477307	103477507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-35934.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	7.24035190617527	7.19126901891916	7.54503993677412	7.57110574465787	7.38881119315645	7.5348859772335	6.97591606448065	7.41189390305585	-0.0809351849187148	0.698660891043144	0.878481929791375
Merged-chr16-91478320-4	chr16	91478226	91478426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6889.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	5.86119654735534	6.04634996232525	6.13841841002035	5.6649066760345	5.86361669233132	5.62606838836519	6.26679313711256	6.01412615998594	0.057005230736332	0.836000019614086	0.937579599304841
Merged-chr11-103032646-2	chr11	103032546	103032746	+	648.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008707, intron 1 of 11)	RSINE1|SINE|B4	4103.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	3.25493232931996	3.70988199650758	3.13761007400864	3.00617114086328	3.28715000370627	2.97430147933411	3.12638719532573	3.0069956003063	-0.736270045815353	0.237117837124198	0.547279017452248
Merged-chr16-91056234-4	chr16	91056136	91056336	+	968.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028905, exon 3 of 3)	exon (NM_028905, exon 3 of 3)	-11857.0	NR_152264	67367.0	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	4.53408091225356	4.72625759348443	4.29065235748586	4.76851493205126	5.0478163499721	4.62181729376937	4.9578847546219	5.04027714697134	0.666668209013275	0.0657838642642853	0.273064361205592
Merged-chr4-41407573-3	chr4	41407492	41407692	+	700.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024241, intron 6 of 12)	ORR1E|LTR|ERVL-MaLR	55629.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	3.2638127592667	2.95001956367244	3.11073532967346	3.18483049113488	2.75579631698086	2.90544682974116	2.86015826256877	2.99381313864526	-1.15309722987469	0.0613281554953693	0.262005688734463
Merged-chr18-69585403-3	chr18	69585300	69585500	+	892.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	239240.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	3.70805978162383	3.57525464376147	3.70855977711507	4.0475558289097	3.58175569626637	3.82772965578412	3.9854309901454	4.0856408185349	0.261562291736368	0.594679774532095	0.823531813292476
Merged-chr6-54954828-3	chr6	54954737	54954937	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	16824.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	4.70750685585029	4.74853366303954	4.29990532197595	4.08684107505892	6.47294115526971	6.82970434299514	6.15605012309613	6.28304262350352	3.51831665347665	1.97631582628245e-27	1.71551444145071e-24
Merged-chr4-126004202-4	chr4	126004089	126004289	+	950.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20470.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	4.5906107658028	4.61374064238013	4.23628626208153	3.82228638183395	4.87366981656027	4.72555699037937	4.8133113788131	4.18191273245407	0.737929849075909	0.0960164795904431	0.339544763551677
Merged-chr7-83566236-4	chr7	83566122	83566322	+	962.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18709.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	4.61481707685144	4.2430844658567	5.28654954322542	5.42169878993199	4.90877815311659	4.96702037600799	5.20401667554274	5.25507840981215	0.190744171609462	0.655120195013734	0.85590940623121
Merged-chr4-40757251-2	chr4	40757161	40757361	+	663.5	f0_balb.idr|f0_c57.idr	intron (NM_021535, intron 1 of 11)	intron (NM_021535, intron 1 of 11)	624.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	3.83519726883409	4.05439767116268	3.83573171757918	3.6448130583996	4.1118694763395	3.95665737452932	3.87140095467683	4.07339218816341	0.474959640025798	0.281447754149893	0.593540225546197
Merged-chr10-80475475-4	chr10	80475392	80475592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-19414.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	6.38338753437108	6.55998453769745	6.23115006838629	6.18210677873377	6.50575447650697	6.42873555522274	6.74866945330911	6.65434030934886	0.366183126712878	0.103377172900008	0.353254142575597
Merged-chr14-21499556-5	chr14	21499572	21499772	+	891.330017	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205241)	promoter-TSS (NM_001205241)	-98.0	NM_001205241	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	4.38129179241305	3.95457100480257	4.66552121876945	4.10994654230972	4.25561185788771	3.90878669542316	3.99946488081819	4.33874890711534	-0.384318388356491	0.393458127394555	0.692576805225404
Merged-chr16-21694215-4	chr16	21694117	21694317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001001881, exon 1 of 2)	exon (NM_001001881, exon 1 of 2)	448.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	6.38851473950195	6.83728874198795	6.57187198778275	6.35366012416636	6.52367370057593	6.43538388021021	6.39188913660103	5.89044548906622	-0.308926635860366	0.224961849466699	0.533378617740588
Merged-chr6-83795081-4	chr6	83794971	83795171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019542)	promoter-TSS (NM_019542)	14.0	NM_019542	56174.0	Mm.190650	NM_019542	ENSMUSG00000034744	Nagk	Gnk	N-acetylglucosamine kinase	protein-coding	7.67749863478143	8.17092565475724	7.70446428983418	7.84779995294676	7.95503078101656	8.05573463749501	7.9254823732404	8.08276001857737	0.175528962550385	0.334356586430423	0.644963887954771
Merged-chr2-129306682-4	chr2	129306594	129306794	+	865.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040371, exon 5 of 5)	non-coding (NR_040371, exon 5 of 5)	3278.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	4.01010167709704	4.41169346837785	3.96240269660725	3.78459777992939	3.97692712758249	3.87017428919183	3.48476889249083	4.18474381651668	-0.420916280978203	0.398793158241623	0.696906489172387
Merged-chr10-117418833-6	chr10	117418739	117418939	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28596.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	4.09489501355778	4.17098797805085	4.47265003342845	4.37857079429806	4.04640899814402	4.26925255466809	3.62260641660353	4.27436458399038	-0.543018011970165	0.228554367678363	0.53740757819062
Merged-chr13-73433773-4	chr13	73433676	73433876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33607.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	6.86676819152526	6.33978835761698	6.37828294721864	6.80410662833814	6.91554543778275	6.89146233360242	6.77987188649355	6.83667555646912	0.325738190918563	0.147566213263442	0.428716275787413
Merged-chr3-145929756-4	chr3	145929679	145929879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009740, intron 1 of 2)	intron (NM_009740, intron 1 of 2)	5517.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	5.55204975066791	5.47725637317777	5.72547377007853	5.44210901241549	5.36371661722646	5.52901536086501	5.32677841780208	5.54910720389394	-0.178628623879339	0.516553244259612	0.778279996996913
Merged-chr11-78792742-4	chr11	78792657	78792857	+	851.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33838.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	4.39029286182896	4.23890942663517	4.31037242694328	4.20355197363781	4.24395456085028	4.0450602438377	4.11355789109824	4.22122338772932	-0.293727024326178	0.457587101868264	0.740689110061175
Merged-chr7-101845341-3	chr7	101845243	101845443	+	790.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303231)	promoter-TSS (NM_001303231)	-12.0	NM_008035	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	4.0464151645738	3.91824397189522	4.13145434776623	3.90701219039278	3.90340128823518	3.8162134643179	3.68362936785286	3.63709760063273	-0.649124455570627	0.152020922419943	0.435896601552091
Merged-chr8-120792871-4	chr8	120792775	120792975	+	975.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54236.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	5.38545458670313	5.58512597012219	5.26959481982599	5.89570226185204	4.84802293646831	4.79390803985043	5.04689097686196	5.1708025056293	-1.11614512906604	0.000643981906425729	0.00943751042155177
Merged-chr19-41341820-4	chr19	41341718	41341918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	43252.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	7.15992001276822	7.3148434636784	7.21525337871257	7.31067109270831	6.76828153476418	6.84441547317553	6.86935410518909	6.72517259509243	-0.630931402229618	0.000722280169170389	0.0103875584664665
Merged-chr4-137373896-4	chr4	137373797	137373997	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16138.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	5.08559714515404	4.91542466665561	5.0187356377969	4.76369000763804	5.19991061023375	4.79716660761582	5.42746139916883	5.3491973197253	0.534444751683476	0.101351469448836	0.349327869353383
Merged-chr7-125473979-1	chr7	125473879	125474079	+	989.0	f1_c57bl6.idr	intron (NM_001360659, intron 2 of 7)	intron (NM_001360659, intron 2 of 7)	17563.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	3.08155282770184	2.92541920565594	3.08191854532962	2.79689260772618	3.55515606110858	3.49336497982536	3.19522784659688	3.47513971822911	1.8532160978819	0.000922672370369141	0.0126200800635098
Merged-chr15-91169123-3	chr15	91168997	91169197	+	899.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011994, intron 6 of 9)	Lx|LINE|L1	22910.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	3.20187739393396	3.33527825358431	3.20226136969815	3.41662325373805	3.19520296355993	3.04539370073124	3.45559918506548	3.31501360932543	-0.144991871980582	0.792990174664544	0.919802981990661
Merged-chr12-55437289-4	chr12	55437199	55437399	+	888.6166380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38474.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	3.98199343074598	4.53019494355515	4.44480037565639	3.66403769726761	4.20785130654691	4.40828793416025	4.25962349079971	4.40244432819701	0.30337346020944	0.511355872281658	0.775335536390107
Merged-chr5-149267692-4	chr5	149267616	149267816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009663, intron 1 of 4)	intron (NM_009663, intron 1 of 4)	2712.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	5.98118696126057	5.63757931783098	6.21195950208077	5.92208927777536	5.61607375056089	6.02429990612393	5.79607518309878	5.55828858735528	-0.315069317034806	0.250762584856409	0.562014862794619
Merged-chr1-58745026-6	chr1	58744940	58745140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 7 of 8)	intron (NM_001355056, intron 7 of 8)	14488.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	6.00279031027346	6.63079159682325	6.2765446428635	6.0047180517143	6.09889429348063	5.91747744866306	5.50882224923028	5.6230861826951	-0.680021218564814	0.0200436891468786	0.128220755913671
Merged-chr16-92847959-4	chr16	92847865	92848065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21891.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	5.76846276283016	5.94121963659799	5.58389992708929	5.74600340715608	5.89857904328747	5.86908117990353	5.90106871269771	5.88297808049264	0.195757217929805	0.429917337957025	0.720635978674715
Merged-chr3-9342256-3	chr3	9342152	9342352	+	926.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAAA)n|Simple_repeat|Simple_repeat	-60826.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	4.61091566575188	4.33302142295874	4.51316645997253	4.590891246248	3.52155929438766	3.58912330251037	3.59568416976341	3.60659168886198	-2.81906530343972	1.72541665879603e-08	8.74739546698309e-07
Merged-chr5-24360937-3	chr5	24360837	24361037	+	907.8444210000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3882.0	NM_008713	18127.0	Mm.258415	NM_008713	ENSMUSG00000028978	Nos3	2310065A03Rik|Nos-3|eNOS|ecNOS	nitric oxide synthase 3, endothelial cell	protein-coding	3.42274574373535	3.49293163106581	3.63447079827341	3.40021161094701	3.60088753012109	3.59401571202771	3.41056854087727	3.36291765030741	0.0520865432894194	0.916947692811699	0.969337311035525
Merged-chr10-127570549-3	chr10	127570465	127570665	+	918.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 34 of 88)	intron (NM_008512, intron 34 of 88)	-36006.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	2.91323381449607	2.88660729451715	2.98158939112385	2.94650944626517	2.78429892793733	3.09438325496699	3.62443758394241	3.32772901953493	1.20197761552843	0.0558549531654242	0.247408000053491
Merged-chr4-116789139-4	chr4	116789043	116789243	+	794.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146151, intron 4 of 10)	intron (NM_146151, intron 4 of 10)	18416.0	NM_026654	68276.0	Mm.30534	NM_026654	ENSMUSG00000028688	Toe1	4930584N22Rik|4933424D16Rik|AI413517	target of EGR1, member 1 (nuclear)	protein-coding	3.8400604669919	3.64741469613769	3.44551455417304	3.87600194210219	3.9123554634108	3.91040677909736	3.82438818754374	3.78881382747304	0.395082223297369	0.399153212645453	0.69723345039411
Merged-chr13-54694133-4	chr13	54694040	54694240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027395)	promoter-TSS (NR_027395)	-180.0	NR_027396	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	9.08012713608717	9.17209359654909	9.12138590100599	8.83314657346882	9.16737154273236	9.40925925540589	9.39428550986099	8.98852392725795	0.242083160325064	0.146988162028295	0.42770298360772
Merged-chr17-15761429-4	chr17	15761350	15761550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007690, intron 30 of 35)	intron (NM_007690, intron 30 of 35)	56483.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	6.50268163108746	6.69454751997206	6.50381638973232	6.7197259850474	6.86029601644845	6.98522578029588	6.8028605828931	6.64614039034026	0.29862196342873	0.149816967414765	0.43222611516459
Merged-chr2-18840164-3	chr2	18840075	18840275	+	651.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5A|LINE|L1	-38357.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	3.09774135063062	2.98526032703095	3.09816709894175	2.96183835801786	2.85174664943423	2.65550633505529	3.19164550144394	3.03931231256689	-0.357990185936696	0.569001364156744	0.809191633255217
Merged-chr8-111726352-4	chr8	111726268	111726468	+	964.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009954, intron 1 of 6)	intron (NM_009954, intron 1 of 6)	5768.0	NM_001198839	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	4.65647045822697	4.7255812248941	4.29985649082441	3.72302722469102	4.46040509275258	4.56207911138354	4.23439825568467	4.1002775005304	-0.124062747114317	0.793359874681446	0.919985704603152
Merged-chr14-72709387-2	chr14	72709287	72709487	+	999.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 1 of 25)	CpG	616.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	3.2897969325718	3.11980375025153	3.78260899603655	3.11334566231549	3.03449192168094	3.34447404496396	3.15373800336539	3.65148775184332	-0.125695933125333	0.8363600354176	0.937720204739175
Merged-chr7-129403943-4	chr7	129403935	129404135	+	944.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146941.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	3.77893663190673	4.11994356923013	3.89046276740684	4.28098584621767	4.14231454423457	4.38695761870424	4.02608153045306	4.0406992793821	0.273476922416436	0.5397152445368	0.792406302070178
Merged-chr14-20078621-4	chr14	20078515	20078715	+	794.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026209, intron 1 of 1)	intron (NM_026209, intron 1 of 1)	4557.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	3.58255408365867	3.55735962110982	3.63900498028077	3.78230532121956	3.82212173372613	3.75594132043761	3.82483418682129	3.74207542168206	0.399865387356207	0.385802033492841	0.687246682566368
Merged-chr11-61774962-4	chr11	61774871	61775071	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013881)	TTS (NM_013881)	-12883.0	NM_001164243	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	5.03714725236022	4.89886575205182	4.86211152189627	4.99592450160153	4.88633187353983	5.20986391714248	5.01345043769279	4.89602364131734	0.0920835620424264	0.770652492486398	0.910265273875382
Merged-chr17-50393478-4	chr17	50393376	50393576	+	989.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99856.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	4.72531779978901	5.84027646105831	5.21277221395468	4.81176191447864	6.12588632799028	5.60735507663389	5.58868620334652	5.3382721798387	0.819916323659739	0.0351223332959857	0.18566450513739
Merged-chr9-65196702-6	chr9	65196623	65196823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17967.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	5.11161406005193	5.34292730514828	5.14582790578879	4.6903238871384	5.17887334005413	5.184129998872	5.33060176916613	5.53476788170762	0.436912513970826	0.184299535446137	0.481633683354282
Merged-chr2-156356265-3	chr2	156356167	156356367	+	945.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027585, intron 9 of 12)	intron (NM_027585, intron 9 of 12)	36712.0	NR_024329	347740.0	Mm.324242	NR_024329	ENSMUSG00000102869	2900097C17Rik	1810005K14Rik|4930563C06Rik	RIKEN cDNA 2900097C17 gene	ncRNA	3.37155280981664	3.25788681416981	3.37196699287447	2.75478902232748	5.15545736083864	5.06920335785454	4.83601587108307	5.08053394786138	6.02125667712442	2.14035691385728e-21	8.65616277110494e-19
Merged-chr8-69921611-2	chr8	69921511	69921711	+	949.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 3 of 12)	intron (NM_001286450, intron 3 of 12)	-19053.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	2.54525506555376	2.58554165702321	2.47485995167477	2.45564600180218	2.48855448585526	2.71909890106574	2.783834817148	2.79386260563947	0.944301563399062	0.154327716758308	0.439553941464511
Merged-chr2-173275720-5	chr2	173275551	173275751	+	873.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022995, intron 1 of 3)	intron (NM_022995, intron 1 of 3)	882.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	3.60826862013658	3.56578993735424	3.66041013436853	3.89087063020551	3.41258999854942	3.42698139862556	3.69431977904989	3.49698402027491	-0.610807274006738	0.221827534275012	0.529905643595211
Merged-chr13-100517921-4	chr13	100517841	100518041	+	894.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360539, intron 2 of 6)	intron (NM_001360539, intron 2 of 6)	-25332.0	NM_022011	23894.0	Mm.272533	NM_022011	ENSMUSG00000021639	Gtf2h2	44kDa|BTF2 p44|BTF2-p44|Btf2p44|p44	general transcription factor II H, polypeptide 2	protein-coding	3.96672032224048	3.90877725880968	4.01893547429173	4.10187968822212	4.66429666486641	3.85901209379736	4.31177942184528	4.16005651975731	0.726513501114091	0.102885779074587	0.352200590042322
Merged-chr16-20804705-4	chr16	20804589	20804789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70178.0	NM_009379	21832.0	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	5.17385407050244	5.44030342577077	4.8493352687678	5.15448343855332	5.14498819958258	5.37935339858567	5.21113364857963	5.10572447840902	0.0657145774983814	0.833335538913588	0.936256874087684
Merged-chr1-186677821-4	chr1	186677721	186677921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009367, intron 1 of 6)	B4A|SINE|B4	28168.0	NM_009367	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	5.3480844218421	5.13129983443021	5.69175184616759	5.68980595951618	5.17839440181565	5.25985397419815	5.46444781338979	5.59193675539857	-0.206637331962145	0.505151765787978	0.77129429698877
Merged-chr3-37660012-3	chr3	37659881	37660081	+	680.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20034.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	3.48084668326378	3.64786420250166	3.59617780942713	3.92037036736852	3.57269884679645	3.71270691019795	3.87203386631822	3.4182412517118	-0.102890251600452	0.839048795912265	0.938856878340637
Merged-chr2-129380385-4	chr2	129380296	129380496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18D_MM|LTR|ERVK	-9257.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	6.65672324587584	6.99532434884311	6.87774826281346	6.88392585869112	7.00409171991763	6.98528077770885	6.88243869048457	6.83189560093317	0.0936336597050119	0.634363855408836	0.845111112089176
Merged-chr2-155764894-4	chr2	155764881	155765081	+	938.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10361.0	NM_010808	17391.0	Mm.389325	NM_010808	ENSMUSG00000027612	Mmp24	AU040325|MMP-21|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding	4.00969075091307	3.9050390382943	4.37544567024465	4.02437263188729	4.18271978416678	4.23745019201974	4.31501563239585	4.48614999969334	0.558890084044187	0.17231465229035	0.465648619414381
Merged-chr10-44596195-4	chr10	44596104	44596304	+	830.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137456.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.23936613816802	4.26312292930817	4.45516973805057	4.53290368645361	3.83773693535452	4.36769081214797	4.31093648037973	4.56558890551612	-0.23282724346898	0.585120799827848	0.818007803493864
Merged-chr12-83885227-4	chr12	83885131	83885331	+	942.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073564, intron 1 of 12)	intron (NR_073564, intron 1 of 12)	-8419.0	NM_001272056	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	4.56963466326813	4.60718425554108	3.9660891959641	3.56894925333379	4.19828690599062	4.94496347880161	4.11380918546973	4.52955263565769	0.53857529749007	0.294344270300288	0.606614080475317
Merged-chr2-52949462-4	chr2	52949341	52949541	+	898.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	91573.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	4.16115430204269	3.68911128262628	4.02873608740212	4.1982230641892	4.2510474376162	3.94699655715037	3.81163766058724	3.82445956944809	-0.156279192384183	0.73694903889463	0.896150880505021
Merged-chr12-51865205-4	chr12	51865101	51865301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35665.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	6.99445672629459	6.76599456438461	6.84474517857375	7.25113298474004	6.49227736207269	6.61604994796911	6.45884048747963	6.46959747980682	-0.68814180162321	0.00163664820714734	0.0200197598791099
Merged-chr8-26888257-4	chr8	26888148	26888348	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-63825.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	5.28085732852659	5.20080736960347	5.00806817299029	5.52429157809874	4.62558984208827	4.74969607254762	4.80311670744709	4.65622526099252	-1.14786828570132	0.000580654643631802	0.00870722118864667
Merged-chr1-136657697-1	chr1	136657597	136657797	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-25699.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	3.45582556244741	3.33619271937822	4.05306410570472	3.95954429116587	3.33777170198076	3.38234677609447	3.4432477373484	3.33216205871216	-1.21884725159373	0.0286311496872433	0.1624857189597
Merged-chr11-95117200-2	chr11	95117100	95117300	+	864.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2917.0	NM_010055	13393.0	Mm.5194	NM_010055	ENSMUSG00000001510	Dlx3	AV237891|Dlx-3	distal-less homeobox 3	protein-coding	3.33758731680518	3.25895595032552	3.28329252997712	2.9716434269994	3.49399680523506	3.21453954771131	2.96030277139339	3.28148951833466	0.171421243728744	0.768718444098138	0.90939721515425
Merged-chr2-125282511-4	chr2	125282394	125282594	+	842.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34979.0	NM_023595	110074.0	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	3.77947206976402	3.68029633032508	4.17052493766778	3.93080677952248	3.67205765117791	3.61343278580057	3.71312975286392	3.55697409338148	-0.783664254454216	0.100818889040473	0.348510888398419
Merged-chr11-109011901-4	chr11	109011834	109012034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	91585.0	NM_015732	12006.0	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	8.1891952824331	8.34803456322796	8.29555107592432	7.51889073829343	8.16202906562875	8.42227307908941	8.07022131635711	9.1716347534578	0.521474776680256	0.0573051054476353	0.250979577938545
Merged-chr4-152027725-4	chr4	152027611	152027811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133879)	promoter-TSS (NM_133879)	-40.0	NM_133879	100090.0	Mm.24661	NM_133879	ENSMUSG00000028952	Zbtb48	0610011D15Rik|AI327031|Hkr3|TZAP	zinc finger and BTB domain containing 48	protein-coding	8.48607904543351	8.62815010444265	8.38293542825214	8.68290471592423	8.59943364990817	8.67023803768297	8.70494364626633	8.44121221178285	0.064294840865764	0.68476924222436	0.870914954532591
Merged-chr10-71365212-3	chr10	71365111	71365311	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 2 of 5)	intron (NM_027184, intron 2 of 5)	17448.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	5.17410509908745	4.87071374673271	5.77473979006344	5.82911613635394	4.13546714335909	4.52574663477611	4.31378669616341	4.27366018256828	-2.45321153507635	3.15261831897029e-09	1.84691538539906e-07
Merged-chr7-45339462-4	chr7	45339395	45339595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010473)	TTS (NM_010473)	4226.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	6.82708654197262	7.69818402964543	7.08807020729323	6.36656869863939	7.49548758357442	7.35560013540878	6.60815754130774	6.6206356937872	-0.0091935043074876	0.984955457808798	0.994512299189622
Merged-chr6-100336058-4	chr6	100335956	100336156	+	848.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR81|LTR|Gypsy	-48698.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	4.13456331012377	4.54966148021254	4.27376307005357	3.84438470658573	4.20376197812326	4.26138848349157	4.29707626744943	4.27106789642084	0.104608073623624	0.807050486791836	0.925590801284429
Merged-chr4-154932985-4	chr4	154932889	154933089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4912.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	6.55387852803345	7.16890236946669	6.66492732237105	6.02138341604472	6.92309746883893	6.68211563126331	6.58510259683764	6.31698086143578	-0.0167689976204414	0.954620977757136	0.983812335497056
Merged-chr7-110689513-4	chr7	110689418	110689618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61861.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	6.80722312992274	7.27982904727522	6.70660787351613	6.31027066506235	7.0527840289901	7.01268562794978	6.9056463641449	6.29475163537679	0.0485102064869825	0.863998038127518	0.94890474241442
Merged-chr10-99926772-4	chr10	99926680	99926880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89041.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	6.36234280109669	5.61760637363796	6.25722787438572	6.60451577117016	6.02989089389308	5.71238844904235	6.27902990084618	6.34182035773058	-0.235833369034743	0.437065440274231	0.725451385050576
Merged-chr2-37431279-4	chr2	37431179	37431379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146253)	promoter-TSS (NM_146253)	-360.0	NM_146253	241322.0	Mm.330182	NM_146253	ENSMUSG00000066798	Zbtb6	A830092L04Rik|ZID|Zfp482	zinc finger and BTB domain containing 6	protein-coding	5.7524505543906	5.50274125416715	5.68364509111794	5.43853096742313	5.16117809110674	5.67817546920693	5.3614335142202	5.47202496161237	-0.295107968685108	0.30924923923317	0.621622697166796
Merged-chr13-37660270-4	chr13	37660163	37660363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-165775.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.95546522372863	6.66761780900738	6.0448386139144	6.02189471771542	6.2044538519273	6.13311188208793	5.83175020629974	5.61436014665757	-0.362137609477357	0.217441341413427	0.524350619658716
Merged-chr4-43469621-4	chr4	43469509	43469709	+	840.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	14100.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	4.0270915112568	3.95304728199335	4.29349947351904	3.67104812402681	4.19647347048293	3.81503148998043	4.45655751977065	4.0735032320217	0.432552689332913	0.349548774721951	0.657050525152079
Merged-chr9-95750319-4	chr9	95750185	95750385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311123)	promoter-TSS (NM_001311123)	73.0	NM_001311123	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	7.06902437668813	7.21207996822898	7.2967800493982	7.18363491436461	7.26175087853009	7.31963462079024	7.34037480631257	7.27081056902881	0.141409128930596	0.425047246493607	0.716641115147179
Merged-chr2-90673493-4	chr2	90673395	90673595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3720.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	6.69361753898572	6.83614318160365	6.70918633350668	6.35245703583673	6.55977453560667	6.50513112317992	6.58645943484465	6.32303463785251	-0.213027615522097	0.349215771477506	0.65679883028286
Merged-chr4-116994465-4	chr4	116994363	116994563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009478)	promoter-TSS (NM_009478)	-50.0	NM_009478	22275.0	Mm.46484	NM_009478	ENSMUSG00000028684	Urod	AI323803|UPD|Uro-d	uroporphyrinogen decarboxylase	protein-coding	6.54401931277526	6.90417829557235	6.02034724110531	6.51904378787704	7.17428608503387	6.91391496569415	7.1652254808206	7.13359445949776	0.792160749376924	0.00096369865641537	0.0130533028858211
Merged-chr1-161361867-3	chr1	161361772	161361972	+	958.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33566.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	4.45760722905981	4.289107374344	4.1380943917681	4.52982461005975	3.77129134169845	3.69927845055973	4.0262654113575	3.77043868707529	-1.4860183429993	0.000856339266842284	0.0118771186037738
Merged-chr10-44632927-4	chr10	44632789	44632989	+	970.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-174141.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.4146664645891	4.33372435451346	4.24174506304786	4.42104412347707	4.32304831805284	3.92728554671142	4.4345912675412	4.49104572241605	-0.10547931193284	0.792074889758892	0.919484287594563
Merged-chr19-34751264-3	chr19	34751166	34751366	+	917.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4155.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	3.88971629359136	3.68786984229452	3.84557503376762	3.95597308205089	3.41285635964227	3.39732316170701	3.73495760862209	3.2821501501616	-1.23855907669178	0.015511349100346	0.107401003658904
Merged-chr7-119920640-4	chr7	119920564	119920764	+	899.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20553.0	NR_126475	73919.0	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	4.49079691366425	3.95898611281485	4.36428884093648	3.67253728067426	4.62841832709951	4.35390461764871	4.6557694009069	4.89832739560088	1.16897230413193	0.00813084113148889	0.0679482581618952
Merged-chr2-128967256-4	chr2	128967150	128967350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178404)	promoter-TSS (NM_178404)	-152.0	NM_178404	78751.0	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	7.81534667490057	7.6153645463487	7.20965975530492	7.37821487336193	7.62457154667043	7.65834373321512	7.36697831769035	7.2836473691584	-0.0339355103251775	0.870775257446758	0.951430072143722
Merged-chr18-69588620-4	chr18	69588521	69588721	+	775.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	242461.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	3.75350772177911	3.95538703846551	3.51459206238639	4.03797749817142	3.87851545428377	3.9274947085424	4.07095953090103	3.90646216663475	0.277751226030907	0.551831868499173	0.799107942541615
Merged-chr7-75371134-3	chr7	75371027	75371227	+	938.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61865.0	NM_153579	64176.0	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	3.71151915896242	3.65048427671892	3.80641985984767	3.97777000137099	3.34456555862909	3.35837812573156	3.36707578366794	3.55399511695418	-1.31365104675271	0.00997985570803309	0.0788058741338016
Merged-chr4-63401171-4	chr4	63401077	63401277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 1 of 21)	intron (NM_001045514, intron 1 of 21)	2268.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	6.79829354253585	6.62428456782738	6.64298750675806	6.56737266488101	6.60920519968889	6.43383159494848	6.53132437219797	6.54392078665761	-0.16975230788152	0.4110442339612	0.706435134467941
Merged-chr9-90126875-4	chr9	90126777	90126977	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12057.0	NM_024431	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	4.44050620900847	4.43822598131082	4.1518204164784	4.52554120073997	4.65580488387715	4.73557534085482	4.58185519113655	4.52201478543861	0.484388929494979	0.187054800579027	0.485306129047369
Merged-chr2-26360984-4	chr2	26360906	26361106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1459.0	NM_001037747	332579.0	Mm.330064	NM_001037747	ENSMUSG00000026928	Card9	Gm782	caspase recruitment domain family, member 9	protein-coding	7.26895449486309	6.90385738915773	6.9160681211656	7.05662909891696	7.00121724093394	7.22203898764056	7.39627599663473	7.12375364132455	0.199292991005455	0.323872275084272	0.635381309415782
Merged-chr17-57344599-4	chr17	57344517	57344717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14069.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	5.30847265556282	5.25837077911423	5.22138475205481	5.19487119172353	5.40596861154167	4.79454967986856	4.96476390606099	5.05611124767129	-0.277973374409877	0.387428545123614	0.688285485118024
Merged-chr3-89391975-4	chr3	89391893	89392093	+	984.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355211)	promoter-TSS (NM_001355211)	76.0	NM_001355211	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	5.1598528958878	4.61573458492439	4.48115259774684	4.91009311388204	4.99187656802114	5.30174848451743	4.72702707347666	5.0972520211061	0.434833482562849	0.230185463507895	0.539403164017397
Merged-chr3-119782517-2	chr3	119782417	119782617	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310711, intron 1 of 13)	intron (NM_001310711, intron 1 of 13)	871.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	4.41585360098035	4.47480665180955	5.05193645255305	4.61929930416189	4.60483105752273	4.92789953774383	4.44407914832876	5.10568666553753	0.274112564947969	0.483921637188262	0.758153322401748
Merged-chr3-15007131-1	chr3	15007031	15007231	+	541.0	f0_balb.idr	Intergenic	RLTR45|LTR|ERVK	35930.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	2.64250370964567	2.88418792248723	3.0243308563591	2.63057357650381	2.22748958067934	2.38573345800754	2.43048152509497	2.2804450999647	-3.19115663417434	0.000568587320989792	0.00855939258563283
Merged-chr18-63708658-4	chr18	63708564	63708764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360837)	promoter-TSS (NM_001360837)	-31.0	NM_001360837	104082.0	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	7.80604357651917	7.9923417951671	7.9549288844549	7.6931150043887	8.02740201948562	7.86165295023997	8.13286845556702	8.12457162017105	0.234370613779345	0.170138600504978	0.46312652282473
Merged-chr1-189875839-3	chr1	189875738	189875938	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008976, exon 19 of 19)	3' UTR (NM_008976, exon 19 of 19)	46453.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	5.16083016261362	5.07145847532415	5.28908231272075	5.52785834106278	3.80285096581987	3.7486394197801	3.96142428645077	3.90932054437662	-3.62166054532218	2.67319561929613e-14	3.91112747074414e-12
Merged-chr8-3515935-2	chr8	3515835	3516035	+	929.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359123)	promoter-TSS (NM_001359123)	551.0	NM_015801	50767.0	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	3.62349338089754	3.28603637965736	3.67610752941867	3.5487767628138	3.63271447753536	3.62929295345068	3.75783933760407	3.77203411205042	0.497503885485296	0.302420051010632	0.614851665549436
Merged-chr13-51417952-4	chr13	51417853	51418053	+	960.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010101, intron 1 of 1)	intron (NM_010101, intron 1 of 1)	9335.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	4.94523040921874	4.31017468219762	4.88137639000805	5.03228899177331	4.50804055051376	4.20760164940717	4.82409771056965	4.73785752583252	-0.500480426531628	0.21466155609652	0.520592671257043
Merged-chr8-94923631-3	chr8	94923530	94923730	+	824.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145972)	promoter-TSS (NM_001145972)	-64.0	NM_001033468	382045.0	Mm.334726	NM_001033468	ENSMUSG00000061577	Adgrg5	Gm1109|Gpr114|PGR27	adhesion G protein-coupled receptor G5	protein-coding	3.90343204810498	4.03054954622566	3.85779025783755	3.96512208129701	3.53305861667213	3.59286548014913	3.52594917028283	3.47532970067383	-1.29072310289043	0.0067517104095921	0.0593078300082831
Merged-chr16-58670351-4	chr16	58670231	58670431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007757, exon 1 of 7)	5' UTR (NM_007757, exon 1 of 7)	123.0	NM_007757	12892.0	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	6.71021971764348	6.4201708342254	7.47129410565037	6.90171319388218	6.51410955160381	6.21828254420654	6.47321351458152	6.25779593846424	-0.798706459893591	0.00371831836212323	0.0378202604597842
Merged-chr9-21261963-3	chr9	21261875	21262075	+	812.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	-3310.0	NM_153583	235040.0	Mm.440165	NM_153583	ENSMUSG00000002820	Atg4d	9830134P12Rik|APG4-D|Apg4d|Atg4dl|Autl4	autophagy related 4D, cysteine peptidase	protein-coding	3.61415196984589	3.63315386764249	4.0074463894466	3.82820809575923	3.96601541141851	3.67242575207	3.48267488303893	3.87163057972261	-0.0361443037347899	0.940890706958612	0.978676631829834
Merged-chr8-14837779-4	chr8	14837662	14837862	+	952.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 13 of 15)	intron (NM_172910, intron 13 of 15)	-50774.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	4.81127212813815	5.04487672380729	5.07285897087164	5.31141018010021	5.33822872040651	5.14326108335756	4.7054342042365	5.44523556952103	0.197305202405838	0.569460858394156	0.809366519988776
Merged-chr13-51645127-4	chr13	51645003	51645203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025415)	promoter-TSS (NM_025415)	-129.0	NM_025415	66197.0	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	8.97121257419738	9.21855734077772	8.81744747608442	8.63385454021692	8.82927725575507	9.29857614442128	8.81731300708447	8.54814927119552	-0.0308000446758991	0.881713827209615	0.955432711296804
Merged-chr3-52046226-4	chr3	52046126	52046326	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	58780.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	5.90637772024956	5.2314404527155	5.13891523277088	5.64308100475439	5.16290410602897	5.76700177395337	5.31394360558001	5.58962169380946	-0.0854086700996977	0.797283791776166	0.921600110017986
Merged-chr11-87853800-2	chr11	87853700	87853900	+	862.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001039684, exon 2 of 18)	exon (NM_001039684, exon 2 of 18)	575.0	NM_001039684	380718.0	Mm.24404	NM_001039684	ENSMUSG00000034121	Mks1	AK190930|B8d3|avc6	Meckel syndrome, type 1	protein-coding	3.18393229536771	3.01561145237431	3.44206053535673	2.78093039909268	2.96277404021977	2.89796272473247	3.22668571761227	3.23835028634528	-0.128749788653701	0.837614107808608	0.93840360404994
Merged-chr5-134555672-4	chr5	134555567	134555767	+	909.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3233.0	NM_009990	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	4.6615926730766	4.46211261932198	4.58161353509501	4.84732659722761	5.0907991429377	4.43361735710014	4.60130871806506	4.73512530971196	0.204029939487574	0.590837853318361	0.821283214886845
Merged-chr1-172423589-4	chr1	172423474	172423674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	47043.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	6.19830751111882	6.11808825410006	6.26522370433946	6.3284530988153	7.32856451261584	7.40168872651035	7.29405770612609	7.19996859718021	1.50210588430682	6.00065596391924e-14	8.15115822243908e-12
Merged-chr18-42792227-4	chr18	42792135	42792335	+	884.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028392, intron 1 of 8)	intron (NM_028392, intron 1 of 8)	107271.0	NR_073583	72930.0	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	5.10674480063841	4.95829025316758	5.00974138023409	5.53382797982502	4.55743526291417	4.75177410971441	5.17241998220476	4.78500871463971	-0.705785421155611	0.0513121171203439	0.235140977250011
Merged-chr4-154929571-4	chr4	154929453	154929653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1476.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	7.44393915645316	7.36094365857656	7.28245786153186	7.2333415102795	7.45674639274782	7.5231607972871	7.49998340771174	7.62576487645595	0.266193399496382	0.125671520347745	0.393683362752401
Merged-chr9-77924002-4	chr9	77923903	77924103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	6638.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	7.32265473345399	7.06716455811609	6.60650227970839	7.03878049365095	7.1892921674158	6.91557826946856	7.17561396836792	7.09523542325467	0.093179693095735	0.668029991665737	0.862837936034118
Merged-chr8-73350526-4	chr8	73350434	73350634	+	805.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317391, intron 1 of 15)	intron (NM_001317391, intron 1 of 15)	3006.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	3.88573263366859	3.78818837996623	3.8327550160241	4.07625150490097	4.23709599122915	3.89674735767002	4.18960608467791	4.07810096710236	0.527411388188815	0.225103605016404	0.533502988868384
Merged-chr2-168250453-3	chr2	168250356	168250556	+	849.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18875.0	NM_001081134	241794.0	Mm.425102	NM_001081134	ENSMUSG00000074575	Kcng1	AW536275	potassium voltage-gated channel, subfamily G, member 1	protein-coding	3.38506974199764	3.04908315706593	3.13988202482935	3.38185492356914	3.28748700499075	3.4425543503297	3.66667090119615	3.54132007769251	0.806863885429005	0.139699060657241	0.415634485810138
Merged-chr9-64738121-3	chr9	64738013	64738213	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017382)	promoter-TSS (NM_017382)	-357.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	5.0755747506516	5.15006894221159	4.75678331445375	4.46521555329252	5.08988837868764	4.89322566492442	4.95430288002568	5.00859608689687	0.233381195005921	0.512069427374772	0.775675608570773
Merged-chr17-43077182-4	chr17	43077058	43077258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	60603.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	6.35087842444219	6.30376715723523	6.28052241288554	6.49194664479815	6.09113348144572	6.07483259766053	6.19225800087689	5.94122706010084	-0.442826479811951	0.0516098722929002	0.236134158252641
Merged-chr1-43913423-4	chr1	43913322	43913522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-20572.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	5.81813392843826	6.07169343671558	5.90926541930548	5.9496772129749	5.67851360680169	5.4196618008206	5.66782888348956	5.64009923483317	-0.545115922504012	0.0330320752594865	0.17830957719513
Merged-chr16-33531347-4	chr16	33531250	33531450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 1 of 11)	intron (NM_001083902, intron 1 of 11)	12755.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	6.72588452598361	6.50759380877937	7.26968454176518	7.31619192309215	5.97445784090426	5.68440052659393	6.10497595958215	5.96789063020016	-1.56764696990261	1.20893599814707e-08	6.32726878030224e-07
Merged-chr13-81107641-4	chr13	81107547	81107747	+	896.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	143573.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	4.62486752516387	4.09018572011317	4.47668236912411	4.46369847313154	4.12546321280638	4.07115473988075	4.45575324310071	4.55034432652408	-0.267768456958494	0.516675372464653	0.778353750061621
Merged-chr2-24345269-4	chr2	24345173	24345373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159562)	promoter-TSS (NM_001159562)	-18.0	NM_001159562	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	7.07864360338779	7.27726883858319	7.00443242862092	6.90893765887258	7.33491102934774	7.59619146137195	7.27655529768635	7.05025833627497	0.351634073379839	0.0875766034861311	0.322667584219645
Merged-chr9-21616065-4	chr9	21615963	21616163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011417)	promoter-TSS (NM_011417)	-106.0	NM_011417	20586.0	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	BAF190A|Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	8.1751817728533	8.3573919496276	7.85526597487186	8.14722383171939	8.2758671116737	8.37809177869096	8.12574278840966	7.91817465585004	0.0492636509332498	0.791243875230863	0.919044202853374
Merged-chr12-10689181-4	chr12	10689077	10689277	+	829.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	242789.0	NR_110487	328061.0	Mm.56067	NR_110487	ENSMUSG00000112792	Gm38407	4931412M21	predicted gene, 38407	ncRNA	3.4536554047645	3.22462848215263	3.90632531875444	3.83647698820549	3.83144972645762	4.0296704556011	4.06530036493638	4.08188161822846	1.0237740980439	0.0512851358644523	0.235071458928189
Merged-chr11-68914766-1	chr11	68914666	68914866	+	566.0	f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	12315.0	NM_145746	252868.0	Mm.76826	NM_145746	ENSMUSG00000032921	Odf4	Oppo1	outer dense fiber of sperm tails 4	protein-coding	3.28926707113157	3.24238367277811	3.35166225857933	3.53092801516408	3.6162539605139	3.69069133139378	3.39821571475027	3.66981632732568	0.746812908191521	0.147746409314646	0.429084894063698
Merged-chr5-21517733-4	chr5	21517633	21517833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199632, intron 17 of 20)	ORR1C1|LTR|ERVL-MaLR	-25794.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	6.69242818641054	6.20448548776607	6.30198980766719	6.52866161247832	6.57688183624759	6.35917737262754	6.55777203314384	6.278215209453	0.00988499501022195	0.966120781132879	0.988026381474581
Merged-chr4-62470914-4	chr4	62470818	62471018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290521)	promoter-TSS (NM_001290521)	-19.0	NM_001290521	71354.0	Mm.155573	NM_023597	ENSMUSG00000028391	Wdr31	5430402I10Rik|spWD	WD repeat domain 31	protein-coding	5.17795751753721	5.61857569296177	5.21197602010019	4.97261778951217	5.59980075054714	5.1784816454028	5.50083464171574	5.36216446810061	0.304685185450971	0.336634035018342	0.646591359476204
Merged-chr7-25219203-4	chr7	25219114	25219314	+	952.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207677, intron 1 of 4)	CpG	645.0	NM_207677	67379.0	Mm.280594	NM_026117	ENSMUSG00000054499	Dedd2	2410050E11Rik|FLAME-3	death effector domain-containing DNA binding protein 2	protein-coding	4.26441060293019	4.53260351290608	4.31310676315113	3.9526219649405	4.95012674446984	4.62183132414778	4.14599103799392	4.77916627420088	0.886715600609755	0.0353383057699963	0.186501465589276
Merged-chr15-84184512-2	chr15	84184412	84184612	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054088, intron 7 of 7)	intron (NM_054088, intron 7 of 7)	-7721.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	3.5388257347412	3.46139645347599	3.29874347243428	3.73638867453677	3.77641838482374	3.70927454199149	3.57876070080459	3.48135789439846	0.352950865859484	0.489173118230861	0.761620931360531
Merged-chr12-4198905-4	chr12	4198787	4198987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 8 of 21)	intron (NM_001159537, intron 8 of 21)	35078.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	6.65740114523639	6.32815375220276	6.77826041274009	6.88285902049553	5.88433578514287	5.97011405835587	6.09603830559759	5.69870073397072	-1.15889177644643	3.1765790920907e-06	9.92126911785537e-05
Merged-chr3-105800786-3	chr3	105800673	105800873	+	972.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145541, intron 1 of 7)	CpG	608.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	4.24782091326631	4.46692468596497	4.81228057632434	4.15077075805654	4.5412302727067	4.65322754123352	4.27930778129528	4.84098251557024	0.358815396922587	0.377300079833339	0.67996861637713
Merged-chr14-27315500-3	chr14	27315370	27315570	+	899.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 2 of 10)	G-rich|Low_complexity|Low_complexity	-20567.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	3.13462130530903	3.00551946494194	2.92034309054177	2.83039607424797	2.7754174987073	2.61500089827055	2.72323793068385	2.66109333435942	-1.3145102400529	0.0479716267947733	0.226010883215857
Merged-chr9-109003370-3	chr9	109003291	109003491	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 3 of 13)	B3|SINE|B2	11489.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	3.13639727382599	3.22917488132439	3.0750146660622	3.20544854142765	3.10195021827192	3.30658065895744	3.12579493306303	3.30442627599703	0.161451375820116	0.76740248063982	0.909004900573458
Merged-chr5-147060173-3	chr5	147060060	147060260	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	16412.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	5.99145478188964	5.74310151855936	5.54115507134168	6.23039773803945	4.2907075793821	4.07005620574248	4.77102129712342	4.20936074513208	-3.13414254397429	1.90691663490598e-06	6.28100042369148e-05
Merged-chr12-86796067-4	chr12	86795974	86796174	+	973.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61705.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	5.17092598521538	5.16565426599445	5.0429700662897	4.55687187908693	5.13268001516827	5.37392957678454	4.98429823447005	4.96994956007773	0.258210006191021	0.457157985027218	0.740364738964964
Merged-chr13-37692552-3	chr13	37692449	37692649	+	940.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133489.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.04889435066948	3.9240602238141	3.90506321896126	4.25521150483749	3.78413469836252	3.60791151725086	3.67019785801597	4.40099610343323	-0.379694597724828	0.446502085845702	0.732176192052232
Merged-chr14-60988715-2	chr14	60988615	60988815	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013869, intron 5 of 9)	intron (NM_013869, intron 5 of 9)	49272.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	2.61135105060061	2.6153576545509	2.89723954313711	2.42536733086377	3.04058025024142	3.13548459081562	3.40360432415818	2.89571593236939	2.28722221715305	0.0006176243158491	0.00914919483409429
Merged-chr11-87426887-4	chr11	87426799	87426999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199293)	promoter-TSS (NM_001199293)	-692.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	6.74036837567926	7.2834232173668	7.20926950280421	6.65909426878999	6.76476311014468	6.65571084766484	6.89963918886182	6.67565291115988	-0.338039947548822	0.150669839067185	0.433489429060758
Merged-chr16-58624234-2	chr16	58624134	58624334	+	874.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7256.0	NM_001033404	328695.0	Mm.293308	NM_001033404	ENSMUSG00000075002	Gm813	Gm1781	predicted gene 813	protein-coding	2.61046264567011	2.48103412863498	2.81107325833741	2.79954623937115	2.76330767128847	3.09557477431064	2.800852585752	2.80964398698573	0.83918228488391	0.206001979625316	0.509876031286958
Merged-chr14-16367168-2	chr14	16367079	16367279	+	589.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_009409, intron 1 of 35)	B3|SINE|B2	1973.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	3.68767173796051	3.77930305102435	3.47438704521968	3.39893297524279	3.54198036068102	3.75615338843826	3.57124452062621	3.28612073500751	-0.128378541945488	0.802672795412431	0.923936032101707
Merged-chr12-30922599-3	chr12	30922500	30922700	+	923.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289480, intron 2 of 8)	intron (NM_001289480, intron 2 of 8)	10931.0	NM_013709	24057.0	Mm.218624	NM_013709	ENSMUSG00000020669	Sh3yl1	AI314953|Ray|YSC84	Sh3 domain YSC-like 1	protein-coding	3.5633300647589	3.86230596242057	3.6198585168217	3.58544145125599	3.5038656984175	3.73696418703571	3.89529290691916	3.72340121982764	0.169686425751847	0.722864601091944	0.88928524667289
Merged-chr1-7395713-4	chr1	7395599	7395799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	306779.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	7.42944917667391	7.58488961164099	7.40132738256687	7.21708321880226	7.39700460433926	7.56851374066988	7.33461370276077	7.63863306094352	0.106639799777005	0.57062868393171	0.810180501736883
Merged-chr4-155993133-4	chr4	155993019	155993219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302469)	promoter-TSS (NM_001302469)	-34.0	NM_001302469	20318.0	Mm.293517	NM_011341	ENSMUSG00000029076	Sdf4	Cab45	stromal cell derived factor 4	protein-coding	6.07735531690613	6.2538195840677	5.79379390985301	5.86519669769151	6.52693242565925	6.4313473984409	6.1291334431722	6.11586078689354	0.482945123284353	0.0559284743587644	0.247535352597562
Merged-chr13-34078050-4	chr13	34077958	34078158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009450)	promoter-TSS (NM_009450)	-50.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	7.82949165865478	8.11751127336346	8.03037207827599	7.90950200597776	8.11487272392727	7.96912708515533	8.08684421733469	7.80211845906316	0.0354642679036173	0.835113373691263	0.937183298750505
Merged-chr8-119432432-4	chr8	119432344	119432544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4718.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	6.55804455934959	6.84567197241951	6.6505356310105	6.45836023791503	6.64378599236508	6.43485600852004	6.28371858751754	5.96139913588886	-0.389405575051017	0.11621997287923	0.377185001348292
Merged-chr7-116491260-4	chr7	116491166	116491366	+	968.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-13103.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	5.09558495177703	5.31581958696613	4.8706991993247	5.31638032979783	5.22448357817816	5.62598282204682	5.20180973920021	5.16017791579912	0.246655311702597	0.436975423123837	0.725408654678613
Merged-chr16-89773986-4	chr16	89773888	89774088	+	845.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44364.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	4.09143236430624	4.45911165585614	3.98353997813438	4.34571926841203	4.44398781824353	4.31856444424926	4.50826331304796	4.41064598762836	0.419412665556176	0.291508204856378	0.603825699545213
Merged-chr3-101948638-1	chr3	101948538	101948738	+	565.0	f1_c57bl6.idr	Intergenic	L1MEg|LINE|L1	-24185.0	NM_001039371	242126.0	Mm.90204	NM_001039371	ENSMUSG00000033147	Slc22a15	2610034P21Rik|4930477M19|A530052I06Rik|BB219042	solute carrier family 22 (organic anion/cation transporter), member 15	protein-coding	2.35070886545928	2.21854174067236	2.18881522375806	1.98005992951014	2.69808919648503	2.74036038083268	2.67750485796747	2.8555425009839	4.06399041938148	3.69564958617648e-06	0.000113433653253323
Merged-chr4-128979535-2	chr4	128979435	128979635	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-13689.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	3.11156890735123	2.84240596007475	3.05913658518125	2.71010002032087	2.90021560312304	2.93049989651698	2.67831825306169	2.68469808158563	-0.576983633216512	0.376801665302005	0.679494401442451
Merged-chr9-123113064-6	chr9	123112958	123113158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081188)	promoter-TSS (NM_001081188)	147.0	NM_026917	69035.0	Mm.28300	NM_026917	ENSMUSG00000025786	Zdhhc3	1110020O22Rik|1810006O10Rik|2210017C02Rik|DHHC-3|GODZ|Gramp1|Zfp373	zinc finger, DHHC domain containing 3	protein-coding	6.19186481705375	6.82769477554826	7.27553060230003	6.32047097882887	6.96300238269651	7.22699357209929	7.09410682842023	7.12506856050077	0.533936093411135	0.0518230278003773	0.236789786609517
Merged-chr19-46504332-4	chr19	46504238	46504438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	2690.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	7.56625599159051	7.82195326477818	8.15441461135587	7.60488335717643	7.5380339231816	7.62054861199177	7.82151334926148	7.68408224038624	-0.176715034589838	0.374967688181461	0.678070908583733
Merged-chr7-115131470-4	chr7	115131358	115131558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	180184.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	6.30311556324567	6.10492518098967	6.48806213457926	6.4905093755213	6.08661820698225	5.95331284318498	6.17857421112084	6.24425438090954	-0.370247313863226	0.117860149886697	0.379772186907435
Merged-chr1-37999339-4	chr1	37999229	37999429	+	772.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 1 of 23)	intron (NM_198303, intron 1 of 23)	1319.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	3.59455721657135	3.77437001093453	4.27143266257042	3.7800034330712	3.87059943280617	3.83610831224884	4.1343409759568	4.02121327929599	0.263946256365672	0.573557207410579	0.811888602285473
Merged-chr8-111094587-4	chr8	111094491	111094691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198308)	promoter-TSS (NM_198308)	-154.0	NM_198308	319518.0	Mm.28350	NM_198308	ENSMUSG00000033624	Pdpr	4930402E16Rik|AU018056|mKIAA1990	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding	6.7224465349767	6.9574315959832	6.67743765024465	6.20288380719508	7.07789280710541	7.1463059255905	7.12909596331557	6.90136294600893	0.580492120967178	0.013458999442697	0.0973278595277587
Merged-chr7-122087291-3	chr7	122087195	122087395	+	981.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028177, exon 5 of 5)	3' UTR (NM_028177, exon 5 of 5)	14553.0	NR_153798	70316.0	Mm.3014	NM_028177	ENSMUSG00000030869	Ndufab1	2210401F17Rik|2310039H15Rik|2610003B19Rik|8kDa|9130423F15Rik|ACP|CI-SDAP|SDAP	NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	protein-coding	3.9885960386367	3.56479622695439	3.45900113412344	3.84941012939876	3.54080553912523	3.86848379580363	3.83445144650193	4.25135269131771	0.472212377639735	0.359827501090764	0.66549295068699
Merged-chr12-71007058-4	chr12	71006942	71007142	+	899.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045055, intron 3 of 3)	Lx8|LINE|L1	8781.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	4.21987833610299	4.3974931540664	4.30769413502728	4.47926110019555	4.02225297584582	3.71882386766123	4.40722282338537	4.17206827540569	-0.643379828790585	0.137255637209266	0.412015814816056
Merged-chr5-16553927-1	chr5	16553827	16554027	+	902.8333130000001	f0_balb.idr	promoter-TSS (NM_001289461)	promoter-TSS (NM_001289461)	26.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	4.26196813908394	4.08283963014632	4.45868259376161	4.20012958012339	3.7049755323134	4.20587603138789	4.20043886348637	4.02834453355655	-0.55157919925979	0.205756324752788	0.509445159300775
Merged-chr5-110385476-4	chr5	110385377	110385577	+	982.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142642, intron 5 of 18)	intron (NM_001142642, intron 5 of 18)	1650.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	4.95299033900064	5.23519531657659	5.15098962171403	5.0361303379248	4.97198068373442	4.89860486668712	4.99868194569617	4.83929525069135	-0.320952651983788	0.304398233952182	0.616988329768724
Merged-chr2-27027522-4	chr2	27027398	27027598	+	923.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177627, intron 1 of 8)	intron (NM_001177627, intron 1 of 8)	500.0	NM_172659	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	4.31319760288759	4.80858827636208	4.21954357977035	3.95234829168707	4.71813445744247	4.61580680762304	4.20128096393791	4.11559232350598	0.194527290860019	0.669335308337392	0.863479905771059
Merged-chr4-141722200-4	chr4	141722096	141722296	+	984.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017966, intron 1 of 9)	intron (NM_001017966, intron 1 of 9)	1223.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	4.75152422795365	5.00180237640611	4.97310306288009	4.76578519731349	4.87605290293165	4.84677788725477	5.16381383723338	4.93552849932619	0.177248371650029	0.585152665880178	0.81800934078373
Merged-chr15-102355548-2	chr15	102355448	102355648	+	943.25	f1_balb.idr|f1_c57bl6.idr	TTS (NR_155425)	TTS (NR_155425)	4721.0	NR_155425	102640093.0	Mm.385825	NR_155425	ENSMUSG00000116402	Gm36246	-	predicted gene, 36246	ncRNA	2.31225047015063	2.44373963395261	2.52304875072628	2.36284759649297	2.55116094296286	2.62772370743829	2.57676297019866	2.58503269744533	0.952263746256598	0.158930453127784	0.446094511738734
Merged-chr18-65497147-4	chr18	65497037	65497237	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	66140.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	6.27487591279953	5.99275163880047	6.24095992769517	6.4906786700679	5.58706238126295	5.66728275880287	5.42612174496835	6.00290387553848	-0.933598788746349	0.000579399356226045	0.00869331087200962
Merged-chr5-148453011-4	chr5	148452921	148453121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53117.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	6.09067279692299	6.42239797270099	6.82038176449425	6.64942787505697	6.62179670921029	6.55451847359034	6.38111182563461	6.426986387115	-0.0390626127314639	0.872031263953274	0.951877155217282
Merged-chr11-80428578-4	chr11	80428482	80428682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178616)	promoter-TSS (NM_178616)	-33.0	NM_178616	69077.0	Mm.260539	NM_178616	ENSMUSG00000017428	Psmd11	1700089D09Rik|1810019E17Rik|2610024G20Rik|2810055C24Rik|C78232|P44.5|S9	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	protein-coding	7.23086371905172	6.98420596199131	6.7367777206537	6.87823323100976	7.06742462113784	7.29898024125911	7.05202747992136	7.14023004945333	0.240590682357585	0.2343344950349	0.54419885879573
Merged-chr18-82822042-4	chr18	82821948	82822148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33849.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	5.63643772307416	5.94280035517249	5.63741747560067	5.75642878376325	6.24470500416687	5.84431878058037	6.32559790642305	6.28757930691177	0.692655734278102	0.00627488435564737	0.0560782318143422
Merged-chr5-36557752-1	chr5	36557652	36557852	+	826.0	f0_balb.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	24645.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	3.67417402550318	3.3933191232526	3.58285048405619	3.7535609424611	3.17832627860976	3.24200143231661	2.98017273116238	2.98683054006483	-1.94625373316227	0.00110804898858195	0.0145839162274916
Merged-chr14-63437378-5	chr14	63437298	63437498	+	932.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177628, intron 1 of 3)	intron (NM_177628, intron 1 of 3)	1004.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	3.8892289741134	4.33460394160743	4.03434717137476	3.77833153483729	3.71085920099034	3.95930518470832	3.76873471571936	3.93745441178748	-0.495928653518091	0.284918014661323	0.596692092201232
Merged-chr4-107803972-4	chr4	107803898	107804098	+	905.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080926, intron 2 of 18)	intron (NM_001080926, intron 2 of 18)	1739.0	NM_001080926	16975.0	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	4.51060055563951	4.4707009203124	4.88238968530532	4.88467352830142	4.56709201697129	4.50500672552103	4.49101519176174	4.70731997652103	-0.308808877215522	0.398698511915204	0.696826631135204
Merged-chr15-55563920-4	chr15	55563824	55564024	+	885.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168250, intron 4 of 16)	intron (NM_001168250, intron 4 of 16)	6516.0	NM_001168250	105837.0	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	4.33691893071847	4.41464963761327	4.29197945299603	4.35685810577565	4.82344420901855	4.37192097580377	4.27334974242632	4.37887869207802	0.334153157292523	0.391439165642579	0.691233709717007
Merged-chr10-34036769-4	chr10	34036625	34036825	+	761.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162937)	promoter-TSS (NM_001162937)	-872.0	NM_001162937	692132.0	Mm.383415	NM_001162937	ENSMUSG00000071340	Trappc3l	Bet3l	trafficking protein particle complex 3 like	protein-coding	3.48871865441698	3.51275476519628	3.84031450850658	3.48967505825605	3.71294683224161	3.54482129248782	3.63654916091502	3.42845580524219	0.019414644752256	0.968715562641006	0.988762939668968
Merged-chr1-6214711-4	chr1	6214625	6214825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009826)	promoter-TSS (NM_009826)	63.0	NM_009826	12421.0	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	7.09630970666496	6.89534610196841	7.46231170607177	7.2570299666115	6.82305166309879	7.00005539781397	7.03814538599095	7.09255148849835	-0.285591879238321	0.171799156640646	0.4650957452081
Merged-chr9-105129985-3	chr9	105129881	105130081	+	928.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029385, exon 3 of 3)	3' UTR (NM_029385, exon 3 of 3)	1824.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	5.04452088420331	4.83092266680254	4.69477834186764	5.10830171214636	3.93050617954732	4.10918786592076	3.9014079798149	4.61594701323811	-1.77588445273784	3.52795431999375e-05	0.000833719324511404
Merged-chr15-75679456-4	chr15	75679337	75679537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355589)	promoter-TSS (NM_001355589)	-637.0	NM_028404	72960.0	Mm.182401	NM_028404	ENSMUSG00000000934	Top1mt	2900052H09Rik	DNA topoisomerase 1, mitochondrial	protein-coding	5.60149393118765	5.85847012252925	5.51373981019706	5.74638833414492	6.00457613709419	6.10320673156277	5.94156803826596	6.20091043569108	0.587401805038018	0.0191212661250074	0.124180597009249
Merged-chr14-17879664-4	chr14	17879585	17879785	+	959.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-101959.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	4.87394113568607	5.0930092016385	5.08290537331224	5.43816620582234	5.03227728760318	4.76116266614594	4.95907172474912	4.75338134007799	-0.522655505834507	0.123563005837229	0.389846959480906
Merged-chr8-84799321-4	chr8	84799230	84799430	+	976.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 1 of 9)	CpG	1008.0	NM_010906	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	4.5877362328297	5.16025053174667	4.77809896532429	4.3012847039531	4.8171080846121	4.68022576482723	4.24769021473696	4.36349274597913	-0.400040343678218	0.346119553408778	0.654371794525311
Merged-chr7-15976110-4	chr7	15976013	15976213	+	855.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081418, intron 10 of 13)	intron (NM_001081418, intron 10 of 13)	-8578.0	NM_153068	259300.0	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	4.01439709193899	4.29560389643826	3.96088640846646	4.02755474894548	4.18778663521205	4.76747281560772	4.19275972138611	4.16256035334086	0.656486386877024	0.123979100092831	0.390765284926741
Merged-chr12-73686966-4	chr12	73686865	73687065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	102169.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	6.42701329285576	6.30965177185161	6.0520026959229	6.17837526516635	6.08417362019736	6.01637057120209	6.31164777020046	6.17268771394262	-0.145966936443248	0.533547552216754	0.788779803917926
Merged-chr17-56812227-4	chr17	56812139	56812339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009056, intron 1 of 16)	RMER5|LTR|ERV1	18769.0	NM_009056	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	5.54605139517758	5.78819974670138	5.87610072042633	6.01588775595716	6.22128768547614	5.90101119459932	6.49036357024418	6.42950389470199	0.695759921947832	0.008954554555323	0.0729147704497211
Merged-chr16-14164130-3	chr16	14164036	14164236	+	787.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114085, intron 1 of 8)	intron (NM_001114085, intron 1 of 8)	861.0	NM_001114085	67203.0	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	3.42190175163165	3.63053825998654	3.42231533491274	3.82665074911375	3.72631253271108	3.47366044536945	3.62649150428169	3.42064262828841	-0.0897082119706294	0.862039730341443	0.947936227886533
Merged-chr11-120581641-4	chr11	120581543	120581743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133796)	promoter-TSS (NM_133796)	-23.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	5.89099743628391	5.93491898347259	5.58084251573624	5.4287879130066	6.3999155661396	6.35243562771392	5.6642941341932	5.88782100003116	0.641814770732607	0.0308229123187016	0.170310827195534
Merged-chr18-65693754-4	chr18	65693657	65693857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4511.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	7.57654136174983	7.50290274742135	7.98212621969815	7.81996910877746	7.05109259020155	7.26251592671434	7.53182247454852	7.14180498816963	-0.640086662204463	0.00189202088275273	0.0223856639650028
Merged-chr19-47395058-3	chr19	47394985	47395185	+	734.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 3 of 14)	B1_Mur4|SINE|Alu	69326.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	3.69903395870896	4.13029002761043	3.69957581597798	3.2714636563913	3.29453797737919	3.71073124188404	3.57662314902024	3.79749952139362	-0.394284575826446	0.476401855348665	0.75294719537583
Merged-chr4-66827614-4	chr4	66827516	66827716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021297)	promoter-TSS (NM_021297)	65.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	8.79509196580135	8.62124006440898	8.74799627898094	8.84461517361	8.53861660622838	8.6238498539891	8.67073124120422	8.52224048521884	-0.211156938476129	0.151379820275441	0.43497582102707
Merged-chr7-126792544-4	chr7	126792455	126792655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360464)	promoter-TSS (NM_001360464)	-8.0	NM_019674	56420.0	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|PP-X|PP4C|Ppx|pp4	protein phosphatase 4, catalytic subunit	protein-coding	7.76444438971841	7.72125088014098	7.22178753363573	7.2612229613785	7.66042299349289	7.91987796118855	7.6736856920709	7.46124833630231	0.232958811760761	0.272075411127383	0.583666536728028
Merged-chr13-28959681-3	chr13	28959578	28959778	+	974.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5979.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	4.61985230027505	3.99412085043946	4.48677972305271	4.1886833371208	4.31803476244457	3.72653631067948	3.72396918066125	3.96626469187934	-0.944230359736865	0.0541026307971225	0.242856224853906
Merged-chr8-126590236-4	chr8	126590125	126590325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164598, exon 2 of 2)	3' UTR (NM_001164598, exon 2 of 2)	3211.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	6.43398798485014	6.27191114382417	6.88648337599157	6.70982685792895	6.46619314020691	6.25164846042726	6.5501148608581	6.48201228348162	-0.227954517146252	0.336728073923282	0.646629460254283
Merged-chr11-62550490-4	chr11	62550427	62550627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002875)	promoter-TSS (NR_002875)	-644.0	NM_011664	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	5.36911586695403	5.49809241589412	5.24613868458387	5.32242500633608	5.39577758375228	5.35614861343492	5.42831058567449	5.58254052590975	0.1432189413903	0.605626018317328	0.82897585326498
Merged-chr1-152805054-4	chr1	152804949	152805149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 1 of 15)	intron (NM_010877, intron 1 of 15)	4896.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	5.28177718317455	5.21141928765112	5.6230116518314	5.63637662086512	5.46806430146227	5.52190103417661	5.75631015872844	5.34240772363543	0.113081451605331	0.700682489321521	0.879330200638978
Merged-chr2-164912326-4	chr2	164912219	164912419	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199027)	promoter-TSS (NM_199027)	-569.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	5.10135129359206	4.87060660813331	5.33587516235088	5.0747498982628	4.71758097666251	4.86932348430115	5.04489817146654	5.27772345104607	-0.221054709149677	0.509957707977003	0.774396341093916
Merged-chr9-63642449-4	chr9	63642361	63642561	+	942.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151671, exon 10 of 10)	non-coding (NR_151671, exon 10 of 10)	39815.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	5.67788681465603	5.02442343577051	5.76307539386054	5.58399990966415	4.47826284117825	4.70702230055951	5.0501922979381	5.20484979329476	-1.22677360523037	0.000796012120553349	0.0111952868462491
Merged-chr11-121685979-3	chr11	121685877	121686077	+	824.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12826.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	3.10623510345523	3.39183650800931	2.97098011920608	3.14289796615595	3.02433023562372	3.28204329741399	3.47874511783157	3.44365359868444	0.559331355581396	0.330746181516824	0.642071195499537
Merged-chr17-78407803-4	chr17	78407701	78407901	+	876.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 2 of 9)	intron (NM_001360407, intron 2 of 9)	10351.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	4.31319701113206	4.28297808511357	4.22446462496883	4.59175414368649	4.36979288844245	4.14813988663889	4.20627015738048	4.22192069249826	-0.320368629315492	0.422269806143555	0.714626353223175
Merged-chr10-44818805-4	chr10	44818696	44818896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-248418.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	5.24894623122171	5.20168989953623	5.34194436086734	5.11246614754514	5.69989000341423	5.45588974216145	5.3153829776846	5.33823134102112	0.456693989928994	0.114663645025991	0.374533599886066
Merged-chr15-79650780-4	chr15	79650695	79650895	+	766.608337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029407, intron 1 of 17)	B1F1|SINE|Alu	8161.0	NM_029407	75729.0	Mm.78946	NM_029407	ENSMUSG00000042564	Fam227a	4933432B09Rik	family with sequence similarity 227, member A	protein-coding	4.20015356061614	4.16517215053271	4.29808650739412	4.18076960856695	4.9840851286185	4.51897089328118	4.41135937261666	4.58753494692698	1.03024081174726	0.00721750950192005	0.0622805856048685
Merged-chr1-95313642-4	chr1	95313550	95313750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026321)	promoter-TSS (NM_026321)	22.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	8.05109329957932	8.11956323155816	8.0051771408753	8.1167188639455	8.21006914961014	8.1894790008064	8.28626775431122	8.11165464675592	0.159113907283021	0.297405777440839	0.609531984810292
Merged-chr16-85124820-4	chr16	85124716	85124916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	48891.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	7.49661758162808	7.20607665313894	7.86913918863596	7.84978558368059	7.21833688791668	6.99886127567988	7.69431214156983	7.27206402841151	-0.420330124354255	0.0750328324861033	0.295592316998469
Merged-chr2-68983707-4	chr2	68983607	68983807	+	790.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 3 of 10)	ID_B1|SINE|B4	122266.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	4.32514174124005	3.7139454061128	4.28549275205544	4.14352572666576	4.06656744258827	4.02942272209564	3.94417341577105	4.39987338614791	-0.0349262196953485	0.937917216681568	0.977460307804652
Merged-chr5-117408457-2	chr5	117408357	117408557	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5545.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	2.84587295713937	3.07373677967761	2.84617441280665	2.70687751864031	3.21511335234597	3.02095148891559	3.08041864283735	3.03373435922947	0.961400658069236	0.105993662119762	0.358665218731758
Merged-chr17-34197674-4	chr17	34197580	34197780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010724)	promoter-TSS (NM_010724)	-515.0	NM_010724	16913.0	Mm.180191	NM_010724	ENSMUSG00000024338	Psmb8	Lmp-7|Lmp7	proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)	protein-coding	6.68649904464438	6.94211947017947	6.19321579008983	6.54512163283322	6.91826665981618	7.28414334958052	6.82274117105426	6.48649606665584	0.406466216457593	0.118645074545707	0.381059370142085
Merged-chr7-89346237-4	chr7	89346125	89346325	+	973.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 2 of 14)	MLT1J|LTR|ERVL-MaLR	-7438.0	NM_001360745	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	4.76279991518015	5.01104126281333	4.80263604659747	5.32307597710619	4.77507828233339	5.21750958764307	5.02383942731162	4.54891816873956	-0.209112681653614	0.57218610895265	0.811128321794733
Merged-chr1-70180546-2	chr1	70180446	70180646	+	892.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_025728, intron 2 of 7)	intron (NM_025728, intron 2 of 7)	228931.0	NM_025728	66722.0	Mm.440554	NM_025728	ENSMUSG00000053153	Spag16	4921511D23Rik|4930524F24Rik|4930585K05Rik|AV261009|Pf20|Wdr29	sperm associated antigen 16	protein-coding	3.40578046466148	3.3960792848373	3.40620152661023	4.03765743596828	3.24001427151004	3.39235112351947	3.84520389608459	3.67776220581465	-0.14690782987523	0.801246334090407	0.923340719847852
Merged-chr9-21547179-4	chr9	21547072	21547272	+	995.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021531, exon 1 of 16)	exon (NM_021531, exon 1 of 16)	278.0	NM_153141	59035.0	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	5.2847837250084	5.39237047008463	5.31634903171303	5.20843609375205	5.30479899176304	5.57720723300686	5.19650380502763	5.50851983889486	0.1858946177987	0.516781107226666	0.77846273160021
Merged-chr15-31224301-4	chr15	31224214	31224414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146057)	promoter-TSS (NM_146057)	-71.0	NM_146057	223453.0	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	8.04815728773991	8.03301824518545	7.98188743811264	8.11160720538716	8.0494536700589	8.19378485623605	8.45381345342227	7.65349312331747	0.0932969002493505	0.638777663500549	0.847385579722562
Merged-chr7-38028897-4	chr7	38028860	38029060	+	780.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9408.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	3.6467989933055	3.36779097247053	3.59755287766206	3.61923615633942	3.47706599377968	3.60679385515694	3.36451834618814	3.37475307690481	-0.350528491695667	0.485299037543016	0.759216653544759
Merged-chr10-83168618-6	chr10	83168492	83168692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021439, intron 2 of 2)	intron (NM_021439, intron 2 of 2)	169225.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	4.85083683643562	5.00275443847765	5.3253859455096	5.06032870196785	4.63749581607103	4.28666378121127	4.75487559958106	4.61224390889267	-0.994793903254631	0.00533137197214137	0.0498334505062443
Merged-chr17-78249817-3	chr17	78249685	78249885	+	775.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	49537.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	3.64241227307974	3.45693178185315	3.48755741959986	3.5117720899626	3.50175948134448	3.2894856679881	3.52731680491322	3.59114897917914	-0.133696599353602	0.788068260029912	0.917932066973263
Merged-chr5-18007253-4	chr5	18007146	18007346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	44676.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	6.82303774406631	6.68039608403095	7.18047491444342	7.26362997675254	6.91087792091626	6.60637308539836	7.04469003646708	7.028205921816	-0.150191381432028	0.514737071841589	0.777226772096149
Merged-chr9-60744692-4	chr9	60744582	60744782	+	853.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31561.0	NM_026235	67557.0	Mm.44546	NM_026235	ENSMUSG00000034839	Larp6	5430431G03Rik|AI552438|Achn	La ribonucleoprotein domain family, member 6	protein-coding	2.97378264162395	2.92915320199868	3.09038871444332	3.02279805112043	2.91696993069899	3.01935469028537	2.77007069967458	3.08868173006619	-0.226896271498772	0.702497788466115	0.880274101915879
Merged-chr8-107096551-4	chr8	107096465	107096665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286200)	promoter-TSS (NM_001286200)	-20.0	NR_104410	21750.0	Mm.6402	NM_009353	ENSMUSG00000031921	Terf2	TRF2	telomeric repeat binding factor 2	protein-coding	7.29905442484993	7.63845678265169	7.22135280241405	7.49536414991543	7.69221899989986	7.72471449882065	7.7386554083136	7.4966872787752	0.311549104186197	0.0931615955756916	0.333894723639585
Merged-chr10-127263182-4	chr10	127263087	127263287	+	784.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008447, exon 1 of 28)	5' UTR (NM_008447, exon 1 of 28)	176.0	NM_008447	16572.0	Mm.30355	NM_008447	ENSMUSG00000074657	Kif5a	D10Bwg0738e|Khc|Kif5|Kns|mKIAA4086	kinesin family member 5A	protein-coding	3.97192297696152	3.68517570576146	3.92676063217614	3.81204706773658	3.82607657139453	3.7862934573325	3.76304765361576	3.92439489056802	-0.0619986641122288	0.889065056577317	0.958437634030273
Merged-chr6-108326650-3	chr6	108326568	108326768	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	113572.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	3.28275290483896	3.1768282977449	3.50496669732036	3.63106430612742	3.30113628999579	3.33274606495262	3.21055893977775	3.60062146879482	-0.184375129812029	0.738289660193243	0.896701754212797
Merged-chr2-27697309-3	chr2	27697209	27697409	+	929.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-11983.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	3.75495074043358	3.65488213551493	4.22559748575677	3.82602774111679	3.30845126059922	3.76766125466755	3.39053348353322	3.89970319189971	-0.816661508992121	0.124882024892581	0.392224226705601
Merged-chr13-76056439-4	chr13	76056324	76056524	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175495, exon 1 of 1)	exon (NM_175495, exon 1 of 1)	572.0	NM_175495	238725.0	Mm.167172	NM_175495	ENSMUSG00000045509	Gpr150	C030001A19Rik|PGR11	G protein-coupled receptor 150	protein-coding	4.78660663308346	5.08390413807385	5.13576909243059	5.36917213828095	4.95835015011735	4.70428188666566	4.98338079144166	4.82365105287215	-0.491117134770002	0.145650284813939	0.425330997053419
Merged-chr3-86976732-4	chr3	86976620	86976820	+	845.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9866.0	NM_001289449	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	3.88077931060921	3.69049185323122	4.11993876294883	4.26841311761257	4.06485932192845	4.05439123048699	3.86574757307938	3.97981732172411	-0.0751573834163494	0.868833659022111	0.950862893339999
Merged-chr8-86920527-1	chr8	86920427	86920627	+	662.5	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-35269.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	3.38803121168165	3.63791012429429	4.00901548633098	3.7616609677152	3.79069661775146	3.69032756650244	3.81698333639345	3.51283666220189	-0.0249638768447045	0.959955473775564	0.985685011293416
Merged-chr10-25324172-3	chr10	25324090	25324290	+	812.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-25027.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	3.30897752264764	3.28428945830553	3.41667203087873	3.60758722969223	2.79620008259373	3.17457287268403	3.24005629541292	3.25053994087261	-1.13587779470927	0.059402749209443	0.25685226250934
Merged-chr5-143048392-4	chr5	143048287	143048487	+	979.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	64633.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	5.40495978122097	5.15417525393496	5.53488151712587	5.5884120897652	4.94289806736435	5.09370638352042	5.32350962790025	4.82886258126136	-0.705390911319771	0.0256662910259229	0.151117572114325
Merged-chr16-91601962-4	chr16	91601852	91602052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4272.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	6.79633653422009	6.30857761027706	6.74166593744576	6.90094297594374	6.55198320245198	6.55804013507914	6.64911931049385	6.87202755377763	-0.0736151780471574	0.749960048432237	0.901564247164595
Merged-chr4-32359352-3	chr4	32359259	32359459	+	989.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58076.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	4.62855826880557	4.48048589209976	4.4831825026936	4.96954552520032	3.97962348863672	3.83846866164737	4.0059676048029	4.0199615862396	-1.77244243013452	3.50057023242845e-05	0.000827522711969527
Merged-chr9-90206710-4	chr9	90206616	90206816	+	932.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 12 of 12)	intron (NM_194334, intron 12 of 12)	43738.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	4.14126349592589	3.93450970002421	4.09026213177196	4.66605902514417	4.34340050164072	4.10597543253214	4.83410760130012	4.45231241449258	0.46959512370643	0.312535408902736	0.624504855620566
Merged-chr9-70942802-4	chr9	70942692	70942892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324472, intron 1 of 9)	intron (NM_001324472, intron 1 of 9)	-7984.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	7.3801414688369	7.4318663158551	6.91132176050865	6.57536263083123	7.16994759445556	7.1417614249908	7.14325792780253	6.6516328435914	-0.093893889352324	0.718891088017224	0.887684154524562
Merged-chr11-78115514-4	chr11	78115424	78115624	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145430, intron 1 of 2)	intron (NM_145430, intron 1 of 2)	20851.0	NM_145430	216971.0	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	5.3839457485194	5.16260644675207	4.97917029704042	5.15792746117239	5.61694993287313	5.58722222907736	5.56924577812171	5.49192969312112	0.695822610055748	0.0129794658147289	0.0948834008678995
Merged-chr8-120131324-4	chr8	120131226	120131426	+	881.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	-13603.0	NM_001163760	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	4.14547843277664	4.02040482379665	4.58120020552904	4.61058114188153	3.71946996862652	4.12098679353683	4.17379585378099	3.9939469315453	-0.93988970412466	0.0385422687591949	0.196970142734832
Merged-chr7-127252592-4	chr7	127252484	127252684	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360916, intron 2 of 2)	B2_Mm2|SINE|B2	7483.0	NM_001360916	244216.0	Mm.41038	NM_177362	ENSMUSG00000054716	Zfp771	G630024C07Rik|Znf771	zinc finger protein 771	protein-coding	4.7935671813542	4.75303998363129	4.34995493446862	4.48783670994785	4.32094100027942	4.43056782015889	4.66535153536809	4.88926934351665	-0.0314878147932064	0.934907242297021	0.97635719558922
Merged-chr1-24676871-1	chr1	24676771	24676971	+	567.5	f0_balb.idr	Intergenic	Intergenic	-1673.0	NM_026719	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	3.58503938325462	3.35514783548245	3.31405132510396	3.29145045687627	3.39054048020813	3.54412001837616	3.36058012319019	3.53381276589954	0.252258635811416	0.619725745741978	0.836791403892028
Merged-chr19-6061204-4	chr19	6061149	6061349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013859)	promoter-TSS (NM_013859)	42.0	NM_013859	29805.0	Mm.2310	NM_013859	ENSMUSG00000075227	Znhit2	C11orf5|Fon|ORF6|Znhit2-ps	zinc finger, HIT domain containing 2	protein-coding	6.32647874563691	6.63490210970766	6.25189028336706	6.0907089232244	6.46408614710651	6.65790533349574	6.09776954866183	6.26675883162838	0.0819600519019844	0.745622863632286	0.899643852838176
Merged-chr17-57332485-4	chr17	57332390	57332590	+	835.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-26196.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	4.12477431782193	3.94831568268653	3.68770532381808	3.55617314816391	4.01431757319931	3.86460999629307	4.06480835486885	3.68575290784791	0.230653515446083	0.628253988040371	0.841427212108636
Merged-chr19-46499967-4	chr19	46499875	46500075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1673.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	7.75902806735232	7.78737370424121	7.35748412612342	7.23329306151525	8.14840818041282	7.9610442455667	7.73032953385358	7.78596900018162	0.485587350944783	0.0203356326088977	0.129432691061517
Merged-chr10-17221651-4	chr10	17221553	17221753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-125871.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	6.15847875902501	6.10010394154515	6.05920897070222	6.21789918247601	5.99443359545933	6.14827404194159	5.80132858192351	5.85144917899848	-0.291137170542831	0.222376871921428	0.530420428819849
Merged-chr8-41292213-4	chr8	41292112	41292312	+	905.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 21 of 37)	intron (NM_023662, intron 21 of 37)	52453.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	4.33406894925666	4.30173933611853	4.27893576155794	4.60963803995275	5.52404128148506	5.3374601062675	5.04848956216792	5.37510533425286	1.83269948903629	5.06231689730271e-07	1.87574520787668e-05
Merged-chr2-109230988-4	chr2	109230877	109231077	+	971.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029790, intron 2 of 5)	intron (NM_029790, intron 2 of 5)	47313.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	3.81407888414129	4.15126507680639	3.81459187872969	4.15859052099493	4.14007679118091	3.62571662794151	4.24979733738981	3.8125170829155	-0.0468595829829849	0.921810364393085	0.970959215211546
Merged-chr4-33248650-4	chr4	33248513	33248713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033225, exon 1 of 2)	5' UTR (NM_001033225, exon 1 of 2)	174.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	9.40510569799098	9.5858534972667	9.61131985225547	9.41817727267594	9.5354299605185	9.71237051998992	9.78789092101113	9.49085245910432	0.158467660342065	0.282440342440493	0.594594100575903
Merged-chr2-11197198-4	chr2	11197087	11197287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	24805.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	6.78627008604878	6.71925445594039	6.78746102600693	7.03159100799038	6.97802959793574	7.04829290829222	7.04808402815464	6.92006725771246	0.205631332721856	0.300280959230372	0.612409340622292
Merged-chr19-16015868-4	chr19	16015791	16015991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30816.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	6.66126054457241	6.51033973905572	6.88396137887878	6.86189362408201	6.70115302071478	6.58938227823991	6.71581293078764	6.31141901998548	-0.214065819286788	0.335166728521594	0.645546936070964
Merged-chr17-86167984-3	chr17	86167897	86168097	+	898.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011104, exon 1 of 15)	5' UTR (NM_011104, exon 1 of 15)	212.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	4.28611671030484	4.33331167998779	4.28677241617202	4.09906176646185	4.25544245627827	4.3200898924321	4.43459107935401	4.56544863792423	0.365420483873509	0.341357635933202	0.650430858980871
Merged-chr1-91459455-4	chr1	91459348	91459548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011066)	promoter-TSS (NM_011066)	-120.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	9.00416664191888	9.0863877973743	8.81146196732174	8.73337990356943	8.7251655608794	9.01726186544846	8.83083585110338	8.84565563689738	-0.0716375045722158	0.655249975424161	0.855984693609784
Merged-chr11-116020726-4	chr11	116020677	116020877	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	3727.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	4.89312294702612	5.34998804121878	4.41468584173755	3.95338295243754	5.31038439307746	5.03420722304519	5.21658114102051	4.99569080378131	0.744928774205055	0.094156685842397	0.335643112200218
Merged-chr4-132600707-4	chr4	132600604	132600804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36637.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	7.42036473622248	7.75400970915362	7.78606760738476	7.91074675281775	7.39764128949297	6.9774778640486	7.28267819032907	7.36632104725692	-0.618237044539782	0.00196052619571393	0.0230772770108685
Merged-chr8-84706915-4	chr8	84706834	84707034	+	969.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081981, exon 11 of 11)	3' UTR (NM_001081981, exon 11 of 11)	5477.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	4.78463132493299	4.72260541803393	4.71374022709451	4.54026570555452	4.56996700929406	4.6889023360666	4.57679903872635	4.4679512752736	-0.230159275427401	0.510642252711626	0.774894383512825
Merged-chr12-100277051-3	chr12	100276962	100277162	+	652.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045741, intron 1 of 3)	intron (NR_045741, intron 1 of 3)	453.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	3.33887615116407	3.20892055444943	3.17437892214489	3.12741068725821	2.85649229795414	3.22573176537791	3.04122463888555	3.28481715971425	-0.412294066350024	0.47724558215426	0.753399593177778
Merged-chr13-96107808-1	chr13	96107708	96107908	+	549.0	f0_c57.idr	intron (NM_029210, intron 1 of 12)	intron (NM_029210, intron 1 of 12)	24769.0	NM_029210	75209.0	Mm.40436	NM_029210	ENSMUSG00000051111	Sv2c	4930527L09Rik|AI841971	synaptic vesicle glycoprotein 2c	protein-coding	2.445625581041	2.86902902331608	2.67541245704367	2.24369963550528	3.21926029977112	2.85493175034038	3.02971139001933	2.80832323627882	1.94702236056805	0.0112023304495979	0.0855180908485555
Merged-chr11-4122729-4	chr11	4122647	4122847	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4018.0	NM_144520	67815.0	Mm.253922	NM_144520	ENSMUSG00000003585	Sec14l2	1300013M05Rik|Spf|TAP	SEC14-like lipid binding 2	protein-coding	4.47227327846468	4.54599332532149	3.98605216264228	4.56466051699884	4.39608993900939	4.60322597035781	4.53028969114361	4.24938786460119	0.0579172077762205	0.8854079043082	0.956984644600969
Merged-chr11-34053647-4	chr11	34053550	34053750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 2 of 20)	LTR103b_Mam|LTR|ERV1?	6722.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	7.17027069433681	7.34595028658151	7.29953220218014	6.81055160020693	7.41950369583075	7.21860688961747	7.15769373608285	6.71145469125549	-0.00774960129326194	0.973613990662656	0.990570637473211
Merged-chr10-39370646-6	chr10	39370506	39370706	+	918.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 1 of 13)	intron (NM_001122893, intron 1 of 13)	807.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	4.55790483188413	4.09352221628612	4.76463760545159	4.84368888637798	4.23023116969327	4.07495921636335	4.29301349243345	4.06138702686597	-1.02657668267716	0.0163410753031058	0.111497450057493
Merged-chr1-138939882-4	chr1	138939764	138939964	+	980.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-23845.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	5.0600926793289	5.84641465637838	4.98145499383664	5.38218096975839	6.15210622531896	5.38601778750699	5.40120525357932	5.50899687224829	0.505014043390035	0.163628163371932	0.453380397860981
Merged-chr13-111930117-4	chr13	111930021	111930221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62185.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	5.68894616464253	5.72214042756305	5.19264275787252	6.08513865775541	5.98078992086571	5.61271611225762	5.78307915501712	5.96233257597172	0.187282138416133	0.540931181718001	0.793009827469438
Merged-chr14-45218063-4	chr14	45217988	45218188	+	936.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310534, intron 2 of 20)	intron (NM_001310534, intron 2 of 20)	1337.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	4.45557323574471	4.70834649959632	4.63415673746841	5.08161367642217	5.17733274291172	4.63519740551175	4.65349122025628	4.82363479385308	0.188209645040571	0.62545623265671	0.839940176674376
Merged-chr6-114921878-4	chr6	114921779	114921979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177683)	promoter-TSS (NM_177683)	-58.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	7.03971095150932	7.26995226376152	6.90121312766339	7.14637679433397	6.96427442808293	6.555689707604	7.07526121726763	6.79861587602818	-0.321799005876033	0.128981854850983	0.399557976943498
Merged-chr19-6275352-4	chr19	6275269	6275469	+	849.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1527.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	3.91869180522581	3.98094263223654	3.28309935560123	3.56983118252303	4.09041559305328	3.94558632099419	3.70642253351536	3.54880323961635	0.372351951058454	0.484877790146475	0.758880279356098
Merged-chr16-27399632-4	chr16	27399525	27399725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025615, intron 1 of 9)	intron (NM_001025615, intron 1 of 9)	10669.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	5.47043216081292	5.40377659320967	5.16754566017876	5.21796925508677	5.46431620024537	5.47254202059795	5.41680272191366	5.38385564165777	0.218722260420417	0.434569786750027	0.7238182012175
Merged-chr7-89403808-4	chr7	89403701	89403901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008055)	promoter-TSS (NM_008055)	421.0	NM_001360746	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	5.75102089371798	6.05326599579064	5.84559468463255	5.8833280112858	5.5056938600214	5.68918770701521	5.54156748241129	5.5082962521626	-0.552242072785695	0.0323199216621413	0.175993454628423
Merged-chr8-56551538-4	chr8	56551445	56551645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001009951)	promoter-TSS (NM_001009951)	411.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	7.91265968722108	7.62745902290156	7.65333065797689	8.31257132589031	7.93266729251412	7.7773164361366	8.14354461029211	7.79689879447118	0.00358181656563909	0.986686817867638	0.995137687953634
Merged-chr11-37043952-4	chr11	37043863	37044063	+	946.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99722.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	4.86915138695121	4.91835633908565	4.86995701064498	5.30500545819384	4.88080693436922	4.42589305938769	4.94863672416624	4.58877713668107	-0.575909803346333	0.1140648090394	0.373580225583924
Merged-chr15-25302831-3	chr15	25302724	25302924	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110940.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	4.96491829393838	5.05970312657042	5.07651020504073	5.62565195087369	5.29510270611375	5.28711542929403	5.38907882744333	5.35718165364289	0.166706437686197	0.612905273051907	0.832938453309945
Merged-chr8-94935335-4	chr8	94935238	94935438	+	979.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033468, intron 6 of 11)	MLT1K|LTR|ERVL-MaLR	11644.0	NM_001145972	382045.0	Mm.334726	NM_001033468	ENSMUSG00000061577	Adgrg5	Gm1109|Gpr114|PGR27	adhesion G protein-coupled receptor G5	protein-coding	4.6271777785545	4.1372998624463	4.62792429918988	4.4826824803838	4.76744211401003	4.80312571362379	4.9572097982409	5.09622494518088	0.908152456583926	0.0114470459713601	0.0869294020266127
Merged-chr11-120991315-4	chr11	120991202	120991402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139059)	promoter-TSS (NM_139059)	31.0	NM_139059	104318.0	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	5.70663459888602	6.21910107238704	5.41902924818574	5.3930144609059	6.08781364361352	5.90940045651564	5.54334013302432	6.09938832976811	0.333235508768016	0.292008587939202	0.604488172040016
Merged-chr17-10356184-4	chr17	10356059	10356259	+	779.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31557.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	3.69335319570144	3.93158294044362	3.98414660639196	3.93175625981777	3.74527729028669	3.6345714704449	3.83154138291708	3.57912793403408	-0.564964657659071	0.221154404123711	0.52921503170828
Merged-chr2-4480359-2	chr2	4480259	4480459	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 3 of 23)	RMER1B|Other|Other	79383.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	2.76046129714888	2.95722065604364	3.35143730764735	2.76154926171962	3.35938049093086	3.16894905667846	3.33683345934717	3.63299993149926	1.57762074067104	0.011149148292189	0.0852309339802081
Merged-chr5-23617100-4	chr5	23617004	23617204	+	882.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009274)	promoter-TSS (NM_009274)	-533.0	NM_009274	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	4.07579665168708	3.98963171453145	3.98310768686593	4.12834138425514	4.17308937406647	3.70837768446643	3.75923160796967	4.11803413961237	-0.222795760121922	0.618650635066419	0.836039000482598
Merged-chr10-67291279-4	chr10	67291157	67291357	+	910.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5976.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	4.46306011407572	4.06773187532611	4.37648559061855	5.16783399679166	4.62130940425061	4.2004423404973	4.26443674946838	4.61920579044527	-0.356615486645665	0.447245117113983	0.732836251973026
Merged-chr11-109473830-4	chr11	109473748	109473948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134038)	promoter-TSS (NM_134038)	-252.0	NM_001029842	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	8.28025791788355	8.32156763063444	8.17589558630917	8.11763085234812	8.28807148489864	8.49212974227356	8.10649053831032	8.29848901810222	0.100649928056298	0.538506040065944	0.791654372874836
Merged-chr8-126684175-4	chr8	126684073	126684273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90737.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	6.99211672133752	6.5489674585924	6.57251471688013	6.48577106445591	6.63689815705018	6.74883587641168	6.48980996033325	6.46713482292567	-0.092240617688052	0.684484644864629	0.870778583703945
Merged-chr8-25077955-3	chr8	25077834	25078034	+	828.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 2 of 11)	intron (NM_031257, intron 2 of 11)	23877.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	3.26201635315345	3.09788715668736	3.14749504904614	3.43356566797302	3.23572441409739	3.2570591891757	3.07586621090514	3.08452266210145	-0.323235295659887	0.566428483130705	0.807900514541786
Merged-chr9-90056674-3	chr9	90056601	90056801	+	833.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 1 of 10)	intron (NM_001312649, intron 1 of 10)	2434.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	3.16305412234773	3.43271685436654	3.41625261498271	2.70372816812616	3.90855632137111	3.41301728281374	3.51158692116562	3.67436331956604	1.46982614114773	0.0175441244694147	0.11712373247125
Merged-chr5-135494449-4	chr5	135494363	135494563	+	893.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	50659.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	4.53519291248926	4.19011056110727	3.66066174667104	4.16002485493105	4.36723352624796	4.50642591333444	4.68738262303876	4.49482908825561	0.812391498242394	0.0633761937186055	0.267179228423159
Merged-chr1-153425149-4	chr1	153425065	153425265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033162)	promoter-TSS (NM_001033162)	-44.0	NM_001033162	71836.0	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	6.09925641063395	5.81092921647937	5.86705256600852	5.6556292240431	5.96163240517851	5.97086564937571	5.74103047804012	5.99534215103698	0.113505426763211	0.65764112759932	0.857424585511082
Merged-chr19-55767431-4	chr19	55767324	55767524	+	920.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	25614.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.6658021974558	4.78507182739763	4.66656818434868	4.35307075351668	4.62460268989664	4.45911913124128	4.56892728027175	4.27836867272229	-0.265193660411286	0.483245969432891	0.757709156275085
Merged-chr8-120300973-4	chr8	120300862	120301062	+	797.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72732.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	3.85009569458652	3.564928148609	3.60845959692439	3.49004329537926	3.37578239093515	3.67108654582315	3.69509014604385	3.49526489833318	-0.215264659547785	0.665211458163118	0.861320791391846
Merged-chr7-75575504-4	chr7	75575397	75575597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 3 of 36)	intron (NM_029332, intron 3 of 36)	119963.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	6.39974054316826	6.11262818405776	5.79976451580501	6.37047473337867	5.99325634820582	6.12691199739783	6.2295058118165	6.27537488245159	-0.073318286544692	0.772815601274928	0.911052408089747
Merged-chr10-41571234-4	chr10	41571141	41571341	+	986.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 36 of 47)	intron (NM_001358562, intron 36 of 47)	3225.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	5.28171543028547	5.83288332813519	5.80739956700452	5.75355707212135	5.65130798559208	5.91121404115149	5.63511473239624	5.17259676478619	-0.124747201394137	0.680954733313707	0.869036611076104
Merged-chr3-137946674-2	chr3	137946574	137946774	+	999.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	28119.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	5.32270644261809	5.02551207804013	4.85503536362832	4.80210794930744	5.06201189291964	4.6934611518289	4.97373003554629	4.96038249322487	-0.134337830360604	0.692133742057599	0.87477161166799
Merged-chr14-103099091-6	chr14	103099058	103099258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347601)	promoter-TSS (NM_001347601)	-154.0	NM_001347601	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	6.15126796676633	6.08107993737147	6.02896248819926	5.87967931912003	6.20878844864577	6.2671201306806	6.06103083767553	5.91184265991623	0.147803751330438	0.538649342899696	0.791679929829652
Merged-chr2-150927287-4	chr2	150927185	150927385	+	991.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 5 of 6)	intron (NM_027014, intron 5 of 6)	17691.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	5.29644554062546	5.30204047125338	5.51496122894869	5.05062379518291	5.09057129989956	5.21150735396564	5.46192645242183	5.0309932331525	-0.147905208531825	0.636239593751018	0.846072899966441
Merged-chr17-73067131-4	chr17	73067013	73067213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40872.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	6.44986075274274	6.62237285234347	6.99617811523225	7.0421409473201	6.63601489091225	6.59225549624896	6.52094171469899	6.44639159897573	-0.37214203175813	0.108858772884482	0.364187751228827
Merged-chr17-29975907-4	chr17	29975815	29976015	+	894.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29124.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	4.29762421171729	4.37728891113445	4.15600300595179	4.19391311237387	4.56621573819808	4.33175687742954	4.55722175604558	4.24998572901746	0.439391493403642	0.24952538528099	0.56056607742034
Merged-chr16-36662886-4	chr16	36662787	36662987	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	3190.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	5.02196383392011	4.91606472531205	4.84213374231691	5.14008857932169	4.82832693288436	5.09179789322705	5.15526018657088	5.08498133479337	0.0764776120932718	0.811090561305771	0.926883359837906
Merged-chr3-55354917-4	chr3	55354778	55354978	+	814.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	-106850.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	3.33098128507274	3.27448016930976	3.44761132554199	3.32390428650669	3.57280251676788	3.44504730560898	3.43419844043395	3.74137048565886	0.717754937048788	0.150730963088667	0.433612707500637
Merged-chr6-145275972-2	chr6	145275867	145276067	+	869.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25415.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	3.55289323852258	3.85575266037588	3.66461992060521	3.33339994163904	4.07389781514233	3.5477903169328	3.75098368618593	3.60819617301225	0.496647575197276	0.331856561393194	0.642929182999623
Merged-chr19-3586803-3	chr19	3586707	3586907	+	781.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008513, intron 21 of 22)	intron (NM_008513, intron 21 of 22)	-11058.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	3.45579073530267	3.08743192473226	3.14620489277988	3.1392549248092	2.9111664921179	3.06666479046027	3.01341073432698	3.14454963686794	-0.722414662465496	0.215285427917082	0.52138741469861
Merged-chr13-94868798-4	chr13	94868706	94868906	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6821.0	NM_011021	18420.0	Mm.42051	NM_011021	ENSMUSG00000021685	Otp	-	orthopedia homeobox	protein-coding	5.55111657298745	5.40317821869513	4.95930545101976	5.47368835119404	5.50546842449331	5.25064772763389	5.42089344574158	5.0328838103887	-0.0889830020886491	0.777245083421283	0.913095244893356
Merged-chr7-88243250-4	chr7	88243148	88243348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34837.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	7.31134852357805	7.38945414223372	7.27114211773048	7.296230920984	7.24798999407218	7.16608650375251	7.20292086509684	6.92978546657242	-0.231428101861819	0.208210114175537	0.512419186671064
Merged-chr16-91001298-4	chr16	91001183	91001383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045515, intron 2 of 32)	intron (NM_001045515, intron 2 of 32)	9812.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	7.32305429752908	7.34319920369634	7.18752309522883	7.00037959888009	7.16272228953093	7.21104417488926	7.20569767638303	6.83948149447832	-0.132291825707337	0.511190265053661	0.775237968566043
Merged-chr11-87595630-3	chr11	87595544	87595744	+	913.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133215, intron 2 of 18)	CpG	3478.0	NM_133215	170749.0	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding	3.98344332249824	3.9519894394291	4.1225690565368	3.84688764811218	3.99638410261368	4.24739953867353	3.86692706923233	3.9320252456639	0.124985294693775	0.771053360264675	0.91035890208966
Merged-chr19-55315928-4	chr19	55315832	55316032	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293685)	promoter-TSS (NM_001293685)	104.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	4.8202273826137	5.19289333985293	5.0990341710929	4.81266153684277	4.91877735306824	5.38288761377934	4.59508134182849	4.92896724647512	-0.00573614869508068	0.987184484979514	0.995258250959001
Merged-chr10-25295152-3	chr10	25295019	25295219	+	861.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 1 of 7)	intron (NM_018747, intron 1 of 7)	4044.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	2.80123152159285	2.72945718277973	2.80149504488942	2.50650004825329	3.65309667248944	4.03767114238469	3.96135297399853	3.59159559295112	5.04899765737161	1.05041465889353e-10	7.99652032143132e-09
Merged-chr4-11156349-4	chr4	11156255	11156455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021897)	promoter-TSS (NM_021897)	-86.0	NM_001199105	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	8.59523440689088	8.4498011711745	8.54084978691654	8.54140072708302	8.54508892135006	8.38865453910008	8.619052447718	8.35143739442941	-0.0618879646993111	0.684312978557304	0.87068468799904
Merged-chr4-83265783-2	chr4	83265687	83265887	+	772.5	f0_balb.idr|f1_balb.idr	intron (NM_027238, intron 3 of 19)	intron (NM_027238, intron 3 of 19)	58402.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	4.08585446428038	3.93487971953526	3.83624384433941	4.05730979939527	3.39719326043196	3.30758898233602	3.25555553047716	3.19150867299917	-2.38175935768867	2.02756730464717e-05	0.000515429332776716
Merged-chr15-6578147-4	chr15	6578024	6578224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1723.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	6.00813156081623	6.11186533612228	5.70198599339568	6.04673639456486	5.93998637678845	5.95605410610494	6.09766286709101	5.43202001804312	-0.160096424054226	0.5568532375369	0.802235069284239
Merged-chr8-109607828-4	chr8	109607727	109607927	+	907.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020046, intron 1 of 8)	B3A|SINE|B2	846.0	NM_020046	56749.0	Mm.23894	NM_020046	ENSMUSG00000031730	Dhodh	2810417D19Rik|AI834883	dihydroorotate dehydrogenase	protein-coding	4.31190536092662	4.46703513823573	4.52662287684752	4.49783986172	4.42927919063545	4.77227847284328	4.04063497130684	4.48368429936409	-0.00605397607798269	0.987783673681323	0.995348878917337
Merged-chr5-62843483-4	chr5	62843390	62843590	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 6 of 8)	Tigger5b|DNA|TcMar-Tigger	29667.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	5.50417577985143	5.46144824374686	5.30275936217666	5.24445059670096	4.92256813639445	4.72096014564294	4.41390443680608	4.58139826328413	-1.35501880547474	8.88255848569836e-05	0.0018379407862021
Merged-chr4-129782044-4	chr4	129781954	129782154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38425.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	5.43380850235402	5.23854945635722	5.34063068412009	5.39707598225026	6.04442781356386	5.72628096529418	5.70125653976623	6.02348816276389	0.895805228925715	0.000816269229383641	0.0114282508808612
Merged-chr17-80497363-4	chr17	80497274	80497474	+	930.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16921.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	4.65527947038056	4.73152278421247	4.57718431413776	4.20583789701943	4.64888384838135	4.43677897584461	4.90525649274044	4.61419935748162	0.265958038466356	0.485495064294736	0.759349088660037
Merged-chr17-6006324-4	chr17	6006231	6006431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357667, intron 6 of 24)	intron (NM_001357667, intron 6 of 24)	-1249.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	7.23759704752749	7.10210727395495	6.89846165526498	7.37543329945291	7.14479297019418	7.11702693980114	7.04452935899526	7.26530854965299	-0.0442469561121798	0.82458416182839	0.932696938095671
Merged-chr19-53406027-4	chr19	53405957	53406157	+	953.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15423.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	5.14738886477856	5.30391874419773	5.307620143357	4.73437735879829	4.50103727553186	4.63146743136623	4.47595400892089	4.05511708488629	-1.48050937764927	0.000199320477606012	0.00362942754554063
Merged-chr9-31130080-4	chr9	31129996	31130196	+	905.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011176, intron 1 of 18)	intron (NM_011176, intron 1 of 18)	1703.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	4.9543919622479	4.50853132444608	4.50762322757363	4.71739583832647	4.56107908725767	4.59389951774184	4.79960375858798	4.95181695366348	0.0988947340559572	0.783695069728064	0.915760438785401
Merged-chr7-16312440-4	chr7	16312325	16312525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133234, intron 2 of 3)	CpG-12701	2842.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	5.062844699502	5.58860135990324	5.50279130981764	5.04900912239014	5.53042173122151	5.31423604638336	5.44840744949882	5.57597171071708	0.286119685582947	0.35060970631079	0.658186562602986
Merged-chr18-75462768-4	chr18	75462669	75462869	+	919.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 10 of 11)	intron (NM_201354, intron 10 of 11)	-51876.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	4.91165180648176	4.29857471426168	4.68260813217004	4.68222004114052	4.35646581350474	4.10761205122669	4.58653483006512	4.4850925740147	-0.592280713880763	0.134278999273127	0.407911030152443
Merged-chr5-23453718-3	chr5	23453612	23453812	+	821.022217	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026984, intron 2 of 25)	B2_Mm2|SINE|B2	19283.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	3.44206380195281	3.72666080710772	3.44249867419617	2.77509467933754	3.9475449274507	4.15894726267963	4.01054851407434	4.15040436698224	2.04827535461395	0.000513094334979284	0.00787888769888067
Merged-chr2-18064577-4	chr2	18064485	18064685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045539)	promoter-TSS (NR_045539)	0.0	NM_001252560	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	7.18552829628592	7.22651727394362	7.20972222435942	7.42057220718614	7.36405203272074	7.44250319120242	7.64867532822629	7.41358937777867	0.260825399998343	0.15668204092508	0.442751637262546
Merged-chr1-144002839-4	chr1	144002740	144002940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009061, exon 3 of 5)	exon (NM_009061, exon 3 of 5)	1309.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	6.19458912547197	6.11530866706289	6.4698335536718	6.49673400682877	6.25667446945637	6.39252416146779	6.5461724631682	6.39779031574638	0.0854398608854938	0.712586347000871	0.88495186291337
Merged-chr5-64886315-4	chr5	64886209	64886409	+	870.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46390.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	3.59489879584761	3.77328335196093	3.85490584767985	3.06960062827209	3.95354894101636	4.19809513130001	3.52303585647888	3.27234953359767	0.508631213726236	0.395754332410055	0.694751581576859
Merged-chr7-24546605-3	chr7	24546500	24546700	+	842.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037143)	promoter-TSS (NM_001037143)	-99.0	NM_009532	22594.0	Mm.4347	NM_009532	ENSMUSG00000051768	Xrcc1	Xrcc-1	X-ray repair complementing defective repair in Chinese hamster cells 1	protein-coding	3.80929209567132	3.61162090759221	3.66474362170519	3.45154515688084	3.56638025873828	3.42848180241149	3.36792171045903	3.89553274893857	-0.15857190861295	0.756660802084032	0.904407301834382
Merged-chr13-49213777-4	chr13	49213614	49213814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 1 of 5)	intron (NM_026738, intron 1 of 5)	2312.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	5.23187345567339	4.90571180932534	5.61552479421386	5.50680802082003	5.04980529274169	4.86413882798306	4.78973308457352	4.92752678097108	-0.81600025147249	0.0159750650165044	0.10956727238483
Merged-chr13-56712378-3	chr13	56712284	56712484	+	935.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164042, intron 1 of 6)	intron (NM_001164042, intron 1 of 6)	8716.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	3.97665856425879	3.77717145186959	3.64557127572027	4.26322810037323	3.77535692848873	4.04987024729174	4.22106265928673	4.15640630562624	0.273363016881094	0.568559521587291	0.808807622253213
Merged-chr6-86371483-4	chr6	86371380	86371580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026506)	promoter-TSS (NM_026506)	-60.0	NM_026506	68011.0	Mm.276802	NM_026506	ENSMUSG00000057278	Snrpg	2810024K17Rik|AL022803|SMG|sm-G|snRNP-G	small nuclear ribonucleoprotein polypeptide G	protein-coding	7.22954385712948	7.44672035376269	6.87244536669096	6.75972570669589	7.13687081068578	7.4181713207077	7.24701062847257	7.14818018497167	0.190829991005502	0.398627467429392	0.696793179038619
Merged-chr10-44565321-4	chr10	44565245	44565445	+	905.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106597.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.44308611087719	4.69671520189767	4.63799892680456	4.85380957187677	4.4487734230424	4.12302863479588	4.09417630103534	4.21225775232925	-1.01816930290877	0.0105264578725267	0.0819582963146553
Merged-chr15-103169111-4	chr15	103169003	103169203	+	891.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5819.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	3.979839526234	4.22515074539798	3.93100273033788	3.91996814965559	4.01693783744528	3.88993644887679	3.91481083430268	4.02557289145058	-0.136957302062396	0.748776838629323	0.901063951017401
Merged-chr10-39402749-4	chr10	39402633	39402833	+	835.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	MTC|LTR|ERVL-MaLR	32934.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	3.99936876922965	3.65484596986969	4.26408476815447	3.88503032676788	4.32709984823456	3.84979171040366	3.98291196212098	4.1793535796719	0.380767443622192	0.404455571569735	0.701548472774202
Merged-chr16-62858161-4	chr16	62858071	62858271	+	760.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011173, intron 1 of 14)	MTE-int|LTR|ERVL-MaLR	3864.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	3.72018678377415	3.3858026992462	3.50022405459479	3.76240163441733	3.87012629960376	3.67509389682778	3.75444176701374	3.76817430039174	0.485303904986661	0.314041895284297	0.62606217497156
Merged-chr4-138972260-4	chr4	138972166	138972366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305423)	promoter-TSS (NM_001305423)	-17.0	NM_001305423	77056.0	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	6.28930746231896	6.63474437187996	6.21245849024756	6.16025599648094	6.43397597543203	6.52153777218147	6.33126959519137	6.20802061471712	0.0705819023496684	0.765712810319886	0.908357650317684
Merged-chr6-39275264-4	chr6	39275155	39275355	+	915.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68482.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	5.10709970494181	4.4233199863731	4.66203158405722	4.89341974751536	4.53590182376145	4.58647973753182	4.24388550567595	4.40642277155851	-0.757339376891497	0.0506293232303057	0.23333607134282
Merged-chr5-124551543-2	chr5	124551443	124551643	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1321.0	NM_001190795	67848.0	Mm.281601	NM_026409	ENSMUSG00000029389	Ddx55	2810021H22Rik|mKIAA1595	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	protein-coding	2.90445207835447	3.02713523344926	2.76134386098027	2.30375165527317	2.98093720975298	3.27092381364008	3.08252494552522	3.45302361337713	1.7763548244413	0.0176390348536978	0.11754723582635
Merged-chr8-34806449-4	chr8	34806352	34806552	+	895.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1158.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	3.73971774859099	3.70558097973118	3.55170133584682	3.62357455228398	4.450456644736	3.86309043294299	4.45868451975517	4.22338122980362	1.67682295380143	0.000180791326663285	0.00334421669453378
Merged-chr3-95951233-4	chr3	95951139	95951339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	21982.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	6.81291829130336	7.10275384313868	6.93360123611853	6.52323864410295	6.7654224993235	6.65944260639086	6.70813331583404	7.01427285076326	-0.0775123351251112	0.732644859900953	0.89409403152779
Merged-chr6-91153739-4	chr6	91153627	91153827	+	894.770874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3088.0	NM_144919	232232.0	Mm.206218	NM_144919	ENSMUSG00000034245	Hdac11	-	histone deacetylase 11	protein-coding	4.16058376565778	3.94952169766613	3.97337473741219	3.98291110504584	4.10234812105608	3.74799669681345	4.18499055024249	4.32188148727902	0.242890675494014	0.572598726359454	0.811251013052168
Merged-chr2-153632371-2	chr2	153632264	153632464	+	871.0	f0_balb.idr|f1_balb.idr	intron (NM_001195390, intron 1 of 9)	intron (NM_001195390, intron 1 of 9)	417.0	NM_001195390	99311.0	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding	3.9507663614346	3.75169029959612	4.29302122986718	3.87073225731836	3.83726425908976	3.85920814046732	4.19608572428614	3.79316134273484	-0.121682583889887	0.791312257424241	0.919050824109746
Merged-chr1-55874928-2	chr1	55874828	55875028	+	848.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56313.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	2.93378891584803	2.84584799732978	2.99613019502876	3.00020001036209	3.17850035223064	3.04143181842135	3.04389791759729	2.99465629648842	0.505321382696546	0.379674552535994	0.682157007046657
Merged-chr19-24967173-4	chr19	24967061	24967261	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5545.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	4.67429705686786	5.17156642843267	4.97868756723057	4.80438932031141	4.98200115533817	4.97248077441073	4.77499434861747	5.04105168126326	0.0608689067278714	0.854535177840493	0.945206126144247
Merged-chr5-113619340-4	chr5	113619236	113619436	+	847.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	24267.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	3.86944966728318	3.92058179534994	4.30404897868872	4.65839785213528	3.98090000323809	3.87180905026983	4.32396026135978	4.21678696888332	-0.340322157615961	0.478422505078748	0.754532850325209
Merged-chr3-54277377-4	chr3	54277281	54277481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253682, intron 4 of 11)	intron (NM_001253682, intron 4 of 11)	-83726.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	6.07263080391613	6.10983637840867	6.16257786949166	6.6439584096421	6.58002599537901	6.29772886877993	6.89225555578718	6.81285396447482	0.548431175398739	0.0373930272406733	0.192979566114118
Merged-chr4-135054610-1	chr4	135054510	135054710	+	576.0	f0_balb.idr	Intergenic	Intergenic	-66035.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	3.08935178118414	2.8176574817375	3.2615190128394	3.1991367757646	3.09056089473773	3.37468972343394	3.07875448022425	3.08819643545144	0.216392724947469	0.713143737435437	0.88527884500467
Merged-chr9-62838653-4	chr9	62838536	62838736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033175)	promoter-TSS (NM_001033175)	-151.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	7.49055082557974	7.16415261709143	7.03175040732145	7.15555857164163	6.93057731195837	7.20865011370773	6.90694615500824	6.62234197398956	-0.39523462172365	0.0678260525858516	0.277890439015043
Merged-chr13-100835061-4	chr13	100834962	100835162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-1635.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	5.9519439296317	5.6512140979268	5.95299279132403	5.96782262364188	6.08166819654789	5.91398530221022	5.83182507464899	6.11361244813995	0.165710170135174	0.505427515815994	0.771470037762552
Merged-chr1-184732225-4	chr1	184732136	184732336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008250, exon 1 of 4)	5' UTR (NM_008250, exon 1 of 4)	257.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	5.55112342676513	5.91735455857658	5.55208500966082	5.48799220901935	5.60920128149286	5.64208330101756	5.84271949256983	5.84659370901238	0.171198277566597	0.528464660346919	0.785098108608097
Merged-chr1-87960232-4	chr1	87960151	87960351	+	919.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033291, intron 19 of 27)	intron (NM_001033291, intron 19 of 27)	48300.0	NM_001198573	227334.0	Mm.80484	NM_001033291	ENSMUSG00000005501	Usp40	B230215L03Rik|C730029K03	ubiquitin specific peptidase 40	protein-coding	4.4707616430448	4.52320738621241	4.47146236623862	4.36276851851175	4.58998190942632	4.46815418655197	4.40926835768935	4.58775307164434	0.158409332129319	0.659001397448432	0.858075830194168
Merged-chr5-148886055-4	chr5	148885950	148886150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153572, intron 9 of 10)	intron (NM_153572, intron 9 of 10)	42597.0	NM_153572	231912.0	Mm.397405	NM_153572	ENSMUSG00000041298	Katnal1	-	katanin p60 subunit A-like 1	protein-coding	5.75630900250481	5.2968661519259	5.4616942928934	5.63076257249848	6.38839932174864	6.35688764436125	6.62875060358034	6.41747391855029	1.39987750179869	2.26445415715268e-08	1.11931654480535e-06
Merged-chr8-33600338-8	chr8	33600269	33600469	+	915.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017374, intron 1 of 6)	intron (NM_017374, intron 1 of 6)	748.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	4.13781411885317	4.13804832668336	4.36082938923026	4.23083207326367	3.94814460325814	4.3589820966529	4.29965686921933	4.39811832684223	0.0828103559393582	0.838603108171873	0.9387708599746
Merged-chr10-99427292-4	chr10	99427178	99427378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	164047.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	5.06423634572732	4.97950972447525	5.21940641905353	5.17766570038732	5.07663345976499	4.57878888797905	4.93876596865951	5.18642538031909	-0.277411855822296	0.399827694232861	0.697909055073835
Merged-chr1-84467914-4	chr1	84467823	84468023	+	873.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 7 of 12)	intron (NM_152915, intron 7 of 12)	-183278.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	4.33403891482239	4.36142460496547	5.00269140436674	5.28181007331752	4.37988468789723	4.41567947647198	4.21595989587793	4.51320957546063	-0.964450165332106	0.0275348771137982	0.158324987323939
Merged-chr16-23557891-4	chr16	23557792	23557992	+	949.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-37077.0	NM_001359083	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	3.78662376025575	4.09883437846848	4.1305627964195	4.529860232353	4.67936031468772	4.30735041889924	4.16224813046274	4.72308371406933	0.727513864596492	0.115756234447588	0.376472232777237
Merged-chr15-39944656-4	chr15	39944560	39944760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172814)	promoter-TSS (NM_172814)	-666.0	NM_172814	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	5.86602393864097	5.69014824351253	5.54050272024656	6.03466657737983	5.53261876516422	5.53519485003468	5.76936886771567	5.7947357858693	-0.252892054339566	0.357791461472865	0.663866486000028
Merged-chr4-148151205-3	chr4	148151101	148151301	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_015797, exon 1 of 6)	5' UTR (NM_015797, exon 1 of 6)	724.0	NM_001163705	50762.0	Mm.27445	NM_015797	ENSMUSG00000055401	Fbxo6	AA408845|FBG2|Fbs2|Fbx6b|Fbxo6b	F-box protein 6	protein-coding	4.66708232827638	4.35503810873295	4.31861971489072	4.44131943067809	5.12691103412734	4.7220984359811	4.60732265768554	4.70239323620119	0.792920484896556	0.0308022742666351	0.170214100285874
Merged-chr2-129388020-1	chr2	129387920	129388120	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-16881.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	5.23303561604598	5.59420947933639	5.35989015366939	5.25404831864422	5.70929404211592	5.47353568037476	5.50122397667893	5.41501303580333	0.308114897370436	0.27765505693899	0.589700641340894
Merged-chr7-29232518-4	chr7	29232356	29232556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033525)	promoter-TSS (NM_001033525)	66.0	NM_001033525	52150.0	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	5.7122585966304	5.53103667209942	5.87024245699638	5.36970600870015	5.8257163344079	5.36791873105028	5.53301377693519	5.38419771197393	-0.109043404409717	0.713345712126776	0.88532630847175
Merged-chr7-121073195-6	chr7	121073095	121073295	+	929.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030691, intron 1 of 5)	B4|SINE|B4	1335.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	4.2281878439144	4.00940374325138	4.00366177510509	3.65306896428123	3.93761454002997	4.1281770123471	3.88534878042546	4.3439868910216	0.285662972634982	0.531029603699013	0.786986115923548
Merged-chr3-89456912-4	chr3	89456792	89456992	+	955.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310640, intron 1 of 3)	intron (NM_001310640, intron 1 of 3)	-2226.0	NM_026784	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	5.13711232763069	4.50409336353138	4.24082209303205	4.76076072735686	4.76695241977755	4.88282168059143	4.90082404056692	4.88800993167344	0.316969254640978	0.404222812619155	0.701366930244469
Merged-chr18-65505996-4	chr18	65505845	65506045	+	936.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	MTC-int|LTR|ERVL-MaLR	-74285.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	5.20067334997231	5.82520961186682	5.69341559814074	5.62716919850736	4.83306634463236	4.59299758641944	4.68553803498042	4.91635993870538	-1.59318451110654	1.69809814776541e-06	5.65600973606899e-05
Merged-chr10-80261744-4	chr10	80261590	80261790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347119)	promoter-TSS (NM_001347119)	-678.0	NM_010255	14431.0	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	7.34641443395852	7.62524907679849	7.29494203303919	7.10578716327747	7.41597022112918	7.58527737011128	7.55361151630949	7.55125525249206	0.234677488442601	0.22567839359541	0.534205599525365
Merged-chr14-75181741-4	chr14	75181638	75181838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	45313.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	6.29888267990823	6.36105754760779	5.78157956459296	6.07993765961591	5.83463847866986	5.61242710982467	6.0053699252269	5.87603010261598	-0.485381320084284	0.0657160438222898	0.272905617457804
Merged-chr17-88341797-4	chr17	88341702	88341902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98902.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	7.52958412396165	7.44420343144587	7.67852784267138	7.69602225117123	7.73775698117446	7.7354601469138	7.59947599894714	7.50711505917415	0.0725613010770493	0.678783761323703	0.868149953232707
Merged-chr13-112387523-1	chr13	112387423	112387623	+	563.0	f0_c57.idr	Intergenic	Intergenic	-76547.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	2.40667963660603	2.42914444055434	2.56896020982488	2.17524317751276	3.10724085139058	3.19491030750701	2.95358287442922	3.02112762363025	4.14909176151209	1.59334730007429e-07	6.55186987128757e-06
Merged-chr10-20990799-4	chr10	20990726	20990926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358561, intron 15 of 22)	intron (NM_001358561, intron 15 of 22)	38279.0	NM_001358561	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	6.06447266804452	6.13094556574121	6.26457567494532	6.59671431665634	6.20658917993201	6.08257387386946	5.94581543904865	6.08257727017955	-0.326543256722166	0.195972879178441	0.496914343164112
Merged-chr4-136454960-4	chr4	136454850	136455050	+	713.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14811.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	3.9014401598095	3.6998103763854	3.60715012592079	3.64430413907803	3.76995773295309	3.77929846178467	3.28768535755014	3.659221227826	-0.22086991073712	0.658282109850699	0.857745523643216
Merged-chr2-23041596-4	chr2	23041518	23041718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-1377.0	NM_145994	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	6.832098916692	6.41953279819199	6.28270414651975	6.40708451427048	6.55809701453134	6.74827787449935	6.84969185941842	6.8284428363906	0.360554973420634	0.111055965702771	0.368173527146865
Merged-chr17-87313523-4	chr17	87313399	87313599	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 5 of 19)	intron (NM_028639, intron 5 of 19)	30613.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	5.90944181082025	5.62860947292607	6.31839104808621	6.46071065315676	5.62738009258743	5.17900906731369	5.31275179537353	5.7175097440075	-1.05579116218946	0.000909140188736885	0.0124828414737597
Merged-chr19-34192645-4	chr19	34192552	34192752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360717)	promoter-TSS (NM_001360717)	-282.0	NM_001360717	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	7.2144802195988	7.21416664169718	6.90521599869722	7.34478926190249	7.25602332056442	7.34780205886747	7.20135807449196	7.28540333366684	0.109780414710075	0.566298620222556	0.807835530970224
Merged-chr16-76410498-4	chr16	76410419	76410619	+	903.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36692.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	4.09902128469178	4.30602703505745	4.74494496897768	4.81830281621543	4.28469770924996	3.99573626189922	4.18241488855056	4.24545202365637	-0.837896988712772	0.0531440015303908	0.240444860259687
Merged-chr4-47251311-4	chr4	47251148	47251348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 5 of 39)	intron (NM_009928, intron 5 of 39)	43236.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	6.21142721048471	5.76543723807786	5.78090313378545	5.65887678747089	5.51599335705104	5.41363779409244	5.522013577457	5.54600443433123	-0.598986684666507	0.032281642304788	0.175872607985137
Merged-chr4_GL456216_random-17295-1	chr4_GL456216_random	17195	17395	+	1000.0	f0_c57.idr	intron (NM_001033326, intron 1 of 6)	intron (NM_001033326, intron 1 of 6)	1414.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	4.37130444574547	4.16079279084248	4.37207175786616	2.5417239123029	8.30032919670101	8.22908957277837	8.3303565024977	8.01392334551266	11.7885075881134	1.39189237591607e-38	4.71778606787286e-35
Merged-chr14-45583839-4	chr14	45583730	45583930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34A|LTR|ERV1	40120.0	NR_045809	67651.0	Mm.55930	NR_045809	ENSMUSG00000115324	4930527F14Rik	-	RIKEN cDNA 4930527F14 gene	ncRNA	6.11071587843989	6.25335291637085	5.93884629815171	6.17499249388211	6.03451995483308	6.01970114328451	5.97590842894151	6.06639988532558	-0.166039064412633	0.476904763017332	0.753208576524599
Merged-chr2-43739653-4	chr2	43739555	43739755	+	906.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9169.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	4.61091541260043	4.45136993504552	4.93156846160939	4.72419801092558	4.67931134792197	4.47301939790989	4.9072378401763	4.4814387495738	-0.0847981702866129	0.817031677264627	0.929622615879435
Merged-chr15-58978783-3	chr15	58978712	58978912	+	937.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	45002.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	3.75235153441162	3.94813392667524	3.49890208364835	3.79507666207181	3.05279209233388	3.22387315423593	3.36932478405732	3.49697796529556	-1.6540675823109	0.00306787315021493	0.0325485382261363
Merged-chr13-47105193-4	chr13	47105076	47105276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025900, intron 2 of 10)	intron (NM_025900, intron 2 of 10)	1045.0	NM_025900	110052.0	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	6.51079834441302	6.77863574765528	6.3403226770115	5.92458728362164	6.71103289079759	6.55278807866239	6.13139586158046	6.13724162410046	-0.00213368731616018	0.994046158601118	0.997739983081298
Merged-chr5-35758493-3	chr5	35758385	35758585	+	792.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177678, intron 1 of 19)	CpG	605.0	NM_001177698	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	3.78036361012399	3.66466375550292	3.58279320232353	3.18304539298246	3.64814663092642	3.46373316670201	3.66987522114042	3.46913448389683	0.0269007430124047	0.959351591422882	0.985513818852278
Merged-chr14-64753574-4	chr14	64753481	64753681	+	976.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 21 of 39)	intron (NM_001081177, intron 21 of 39)	101050.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	4.96267862186428	6.14886359689765	5.85328697456208	5.22606279009061	5.09240368651223	5.6459685019862	5.26420584954562	5.25438280463215	-0.528812808112642	0.161542782700948	0.450407525945818
Merged-chr2-59645462-4	chr2	59645360	59645560	+	935.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	-1309.0	NM_001290659	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	4.46429733788866	4.27918321594283	4.73726926711704	4.37727224393732	4.82689240850393	4.59598444187664	4.40123581018318	4.6986306688255	0.402785036832395	0.279760164007446	0.591827681649692
Merged-chr4-35063123-4	chr4	35063029	35063229	+	976.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 2 of 3)	intron (NM_178061, intron 2 of 3)	-88926.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	5.58012656241566	5.91556116204514	5.72298653762145	5.42104977809453	5.3758922232428	5.04446434907178	4.92161640247691	5.09609096634809	-0.946224648224858	0.00268847094837939	0.029327612817578
Merged-chr18-35740515-4	chr18	35740418	35740618	+	962.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289592)	promoter-TSS (NM_001289592)	36.0	NM_028261	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	4.95047056135109	4.6340283443955	4.17834379579603	4.8312207016959	4.77951445662472	5.05601008143073	4.68022166640471	4.88169584292887	0.340706139710933	0.368546450334099	0.672992613762041
Merged-chr9-45049896-4	chr9	45049801	45050001	+	960.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357727, intron 5 of 5)	intron (NM_001357727, intron 5 of 5)	-5280.0	NM_001093749	319742.0	Mm.49611	NM_176993	ENSMUSG00000070305	Mpzl3	5430427F17Rik|A530065I17Rik|rc|ruf	myelin protein zero-like 3	protein-coding	6.08171302511458	6.03836369889728	6.06345999452322	6.21635264796369	5.45641866525046	5.05463144080672	5.48194976083131	5.93642389670803	-0.956583382622976	0.000969337965297976	0.013107239177801
Merged-chr5-90877066-4	chr5	90876986	90877186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1B|DNA|hAT-Tip100	-14159.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	6.47331517204154	6.0132611161111	6.70475536104458	6.74551786164817	6.18801448176812	6.50879165208924	6.65649300747676	6.46982725443871	-0.0913229122239648	0.724673310152538	0.890415158618739
Merged-chr8-71597026-4	chr8	71596933	71597133	+	868.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166213)	promoter-TSS (NM_001166213)	-613.0	NM_001166213	100037278.0	Mm.482159	NM_001166213	ENSMUSG00000043243	Fam129c	Bcnp1	family with sequence similarity 129, member C	protein-coding	4.33114882134036	4.66986841535954	3.93609786677259	3.83145937481987	4.73032936758868	4.27628384043121	4.31186555314316	3.9339456963241	0.27858508939301	0.565964693908657	0.807783748011785
Merged-chr2-119112742-4	chr2	119112638	119112838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011234)	promoter-TSS (NM_011234)	-79.0	NM_011234	19361.0	Mm.330492	NM_011234	ENSMUSG00000027323	Rad51	AV304093|Rad51a|Reca	RAD51 recombinase	protein-coding	6.12064549605199	6.20674522338263	6.02100482858051	5.73474130114369	5.80986940210092	6.08689058579305	5.60275886853563	5.95219034316774	-0.237840261124562	0.37433085085544	0.677752795081509
Merged-chr7-90461104-4	chr7	90461002	90461202	+	985.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-3894.0	NM_025460	66271.0	Mm.28963	NM_025460	ENSMUSG00000030615	Tmem126a	1810020E01Rik	transmembrane protein 126A	protein-coding	5.02962666647439	5.28804444597529	5.27005606187175	5.4539206646616	5.20050568315884	4.92284115062716	5.92091787390562	5.44100719372	0.259631856071531	0.453998022874887	0.737855632254351
Merged-chr6-148615607-1	chr6	148615507	148615707	+	614.5	f0_balb.idr	Intergenic	Intergenic	-1298.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	3.42977983437551	3.44538664341682	3.37391847106484	3.31705068569962	3.60487826964817	3.36494803464869	3.41700939743813	3.42838732249381	0.263294946909163	0.600314300080973	0.826766471866254
Merged-chr15-101453446-4	chr15	101453300	101453500	+	967.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025487, intron 4 of 4)	intron (NM_025487, intron 4 of 4)	5655.0	NM_025487	66322.0	Mm.158111	NM_025487	ENSMUSG00000063971	Krt88	1700011A15Rik	keratin 88	protein-coding	3.84593225285105	3.92894029845506	4.18292970121812	4.32020488502694	3.76749615603994	4.02219855552613	3.83137694797045	4.26188762867542	-0.307572927395361	0.503186823470679	0.770238732070433
Merged-chr10-39378175-4	chr10	39378067	39378267	+	940.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 1 of 13)	intron (NM_001122893, intron 1 of 13)	8368.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	4.48963523773476	4.36986488506537	4.71511478625326	5.12560813527837	4.53342213979449	3.79051402110416	4.14885059818916	4.40285871123779	-1.05222138412984	0.0246058192235548	0.14683047636046
Merged-chr4-155492100-2	chr4	155492000	155492200	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160017, intron 1 of 10)	CpG	739.0	NM_001160016	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	4.28384927856249	4.17265036518674	4.00912423638346	3.68715153903276	4.11268293124415	4.08146715023531	3.99225313444198	4.54147029352123	0.394697072493141	0.384550557828723	0.686058353293141
Merged-chr16-11288375-4	chr16	11288261	11288461	+	873.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25448.0	NM_011608	21935.0	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	3.94005743158894	4.09112157445894	4.09825317153635	2.78652597155715	4.84596497423562	4.50102558505078	4.26238403384116	4.23646959758567	1.43286423151796	0.135641266876516	0.410022921603751
Merged-chr3-84356802-4	chr3	84356702	84356902	+	766.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040752, intron 3 of 3)	RSINE1|SINE|B4	23119.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	3.61846110283074	3.69367037912101	3.98533367588586	4.04397777743353	3.80969394996846	3.39412383198463	4.21203499153524	4.07069434178343	0.148625935682835	0.775573506486567	0.912391634160948
Merged-chr11-93985590-2	chr11	93985490	93985690	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10501.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	2.69156370105334	2.68380030716361	2.69181787234619	2.80994429238819	3.15921702640595	2.93476822336757	2.87989854559341	3.11295317746609	1.32889300399564	0.0332012347108005	0.178966115117447
Merged-chr7-89356511-2	chr7	89356411	89356611	+	767.958374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 1 of 14)	intron (NM_001360746, intron 1 of 14)	-17724.0	NM_001360745	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	3.52996897709026	3.24933376737181	3.35954769549546	3.83315545571553	3.23532068781225	3.34477265467149	3.5161898269438	3.81348362362297	-0.0960082320672773	0.865697906879634	0.949726204279319
Merged-chr2-109431007-3	chr2	109430897	109431097	+	638.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	150259.0	NM_139303	228421.0	Mm.274086	NM_139303	ENSMUSG00000027115	Kif18a	AU024633|B130001M12Rik|gcd2	kinesin family member 18A	protein-coding	3.30794533379598	3.27462858374671	3.36073066690774	3.46046257209261	2.83783028766071	3.11846567186277	3.12609442571212	3.00786957728032	-1.38322465058702	0.0187560875714542	0.122638210292902
Merged-chr13-73767349-4	chr13	73767251	73767451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 1 of 24)	intron (NM_001360694, intron 1 of 24)	3654.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	6.04369638630201	5.98905367474158	5.99932416259467	6.47576863172336	6.16388864834039	6.10641601033682	6.60466204156047	6.50212724820829	0.294341956294399	0.266513490064127	0.578164752957072
Merged-chr1-179518019-4	chr1	179517922	179518122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027188)	promoter-TSS (NM_027188)	19.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	6.35019722460852	6.38412580395818	6.40508691564077	6.40696328081041	6.40040877991606	6.50903961633468	6.24380587572105	6.63924242551423	0.0956896275361344	0.660074915887626	0.858704966919738
Merged-chr7-45301489-2	chr7	45301389	45301589	+	819.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18616.0	NM_001033176	76713.0	Mm.425445	NM_001033176	ENSMUSG00000070568	Slc6a21	1700039E15Rik|Gm19188	solute carrier family 6 member 21	protein-coding	2.97396548071599	2.57353150930739	2.56795221059254	2.41706159008096	2.96642684459315	3.25504463907749	2.84126464797314	2.97265932643657	1.73459735741258	0.0108487300538593	0.0837256593845439
Merged-chr4-62630165-4	chr4	62630042	62630242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019492, intron 14 of 19)	intron (NM_019492, intron 14 of 19)	10470.0	NM_134257	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	5.92165129487886	6.00120029075475	5.65312149415577	6.15522289179303	5.76906760562523	5.77482062362999	5.72878353145567	5.85052906650157	-0.294346647575384	0.254861155863289	0.566332486675607
Merged-chr1-43502017-7	chr1	43501923	43502123	+	992.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	56272.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	4.17019252768527	4.62182013199715	4.78097667498115	4.46248211714502	4.41302853530815	4.24418536616112	4.54921822211384	4.36122021812268	-0.290139675381262	0.457760488821387	0.740790601896543
Merged-chr12-84854752-3	chr12	84854658	84854858	+	987.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 2 of 34)	URR1B|DNA|hAT-Charlie	-21044.0	NR_028577	100303738.0	Mm.479389	NR_028577	ENSMUSG00000092130	D030025P21Rik	-	RIKEN cDNA D030025P21 gene	ncRNA	3.860403765729	3.98541205147779	4.72933019642753	4.64504289731828	3.49002330828366	3.92785054714611	3.89979421769683	3.85875930810215	-1.51185150883658	0.00313065024477726	0.033017714294414
Merged-chr1-86444208-4	chr1	86444097	86444297	+	859.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17868.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	4.01975357049605	3.97986588515701	3.76366696053383	4.27211264650036	4.07833550691626	3.82393787902214	3.85706591727244	4.01793564285197	-0.22644653715045	0.615890732967435	0.83467255086626
Merged-chr1-97633072-4	chr1	97632973	97633173	+	936.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	28603.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	4.51468568144384	4.76449103189744	4.47292337929704	4.70986468685766	4.49187593884441	4.19869581860152	4.820799666462	4.51252341608008	-0.226723495160414	0.549779133127149	0.798147832027397
Merged-chr17-65730493-4	chr17	65730391	65730591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	42261.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	6.62855180198937	6.32966794511691	6.39044701155367	6.0732111997346	6.61834890090729	6.29441336642585	6.42579929790556	6.23686302634588	0.0848723920967608	0.728061894268128	0.891779294267982
Merged-chr14-30944300-7	chr14	30944207	30944407	+	987.642883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1018.0	NM_001306078	16424.0	Mm.3227	NM_008406	ENSMUSG00000006529	Itih1	ITI-HC1|Intin1|Itih-1	inter-alpha trypsin inhibitor, heavy chain 1	protein-coding	4.3231454952656	4.90608478707728	5.14963849391099	4.32056078210722	4.70281182346131	4.72957412074865	4.35404054697779	4.55107607880217	-0.264558545919006	0.527239652908757	0.784237720957866
Merged-chr1-191198120-4	chr1	191198015	191198215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14782.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	7.2487581668833	7.2943910103135	7.38217395696518	7.52409691990375	7.08580097757889	7.09866309316918	7.1366391744349	7.04804790956599	-0.385461871296502	0.0356130285005575	0.187385776007579
Merged-chr11-109331546-4	chr11	109331442	109331642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15325.0	NR_027883	67927.0	Mm.394490	NR_027883	ENSMUSG00000099630	1700096J18Rik	-	RIKEN cDNA 1700096J18 gene	ncRNA	6.86269458215232	6.87853463045852	6.56074551412149	6.77323713533222	6.98630691330523	6.92799784853244	7.10471848042283	6.65484248436696	0.217502772030261	0.297753069283613	0.60998030561342
Merged-chr10-76962053-4	chr10	76961972	76962172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021568)	promoter-TSS (NM_021568)	-125.0	NM_021568	59093.0	Mm.272803	NM_021568	ENSMUSG00000001120	Pcbp3	AlphaCP-3	poly(rC) binding protein 3	protein-coding	7.29827554783707	7.68410366561574	7.35651061720463	7.62592764312836	6.15187075829228	6.39605541623706	6.33059508173728	6.2309234745997	-1.74256369196431	1.26023115688035e-16	2.61521846984218e-14
Merged-chr16-91561764-4	chr16	91561673	91561873	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008338, exon 6 of 7)	exon (NM_008338, exon 6 of 7)	14679.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	5.43586343649207	4.964699805643	5.12757804005492	5.22379758697207	5.98292038937138	6.19091900651609	5.75371174730801	6.30519499469509	1.45379907871528	3.48806498128947e-07	1.33410519776036e-05
Merged-chr11-67564379-4	chr11	67564273	67564473	+	978.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	-22127.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	5.31074145202158	5.81759022683598	5.61104540720441	4.73372967430923	6.20599068236391	6.09183170805928	5.82324868981547	5.43598607225752	0.834039385070602	0.0193530319637965	0.125164670808821
Merged-chr1-81059043-4	chr1	81058940	81059140	+	979.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17910.0	NM_001356399	241134.0	Mm.313904	NM_172849	ENSMUSG00000054976	Nyap2	9430031J16Rik|Jr6|Kiaa1486	neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2	protein-coding	4.82379701317351	5.10830140878635	5.21360047950521	5.6758225001947	4.86252924383693	5.11964912546649	5.0606038510424	5.20998742990195	-0.380276503763705	0.280871861587481	0.593046134375584
Merged-chr5-66079915-4	chr5	66079805	66080005	+	891.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	18274.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	4.68223735883975	4.36949293555372	4.34325915816518	4.230283729906	4.81288604875385	4.52228054743667	5.09338607801319	4.56283569893747	0.803817349114201	0.0337531473023168	0.181144180941839
Merged-chr3-37693114-1	chr3	37693014	37693214	+	686.5	f0_balb.idr	Intergenic	C-rich|Low_complexity|Low_complexity	31246.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	3.34827553585656	2.92514678766618	3.3488035570951	3.13679127104191	2.92773439206896	2.85939139112551	2.88643071163623	2.89409064375282	-1.30035761272116	0.0368859524026524	0.191307578407781
Merged-chr13-49300842-3	chr13	49300745	49300945	+	919.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	8363.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	4.1043263087762	3.89551179910578	3.91689184529918	3.94598023262368	3.76650365984535	3.87531944659334	4.12898391084701	4.10238419162497	0.0162233368368122	0.970218764195808	0.989328178694086
Merged-chr7-19694030-2	chr7	19693930	19694130	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1371.0	NM_007469	11812.0	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	5.38860461017341	4.91933509843295	5.21549918762715	5.22252897110429	5.22844340970646	5.11631980144927	5.1898156998543	5.33044292419958	0.0455022972830093	0.880103418923914	0.955083490960425
Merged-chr18-8370474-4	chr18	8370405	8370605	+	807.195862	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	500792.0	NM_001360956	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	4.604331141565	4.33533479042808	4.4433091231634	4.64745916638387	4.52654083274626	4.33466577307987	4.58349688756803	4.6020596294487	-0.0111642204722512	0.975729087380983	0.991347073148764
Merged-chr8-60978705-4	chr8	60978610	60978810	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173873, intron 1 of 12)	intron (NM_173873, intron 1 of 12)	4601.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	5.43060916618181	5.29942268839722	5.19420102900482	5.42518222348181	5.52575543937671	5.26875307389806	5.23194527020149	4.93958055184678	-0.13521006376845	0.659120597545469	0.858127469503382
Merged-chr5-67600126-4	chr5	67600026	67600226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7757.0	NM_001033415	330096.0	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	5.58051466814576	5.61411148172428	5.32873382633405	5.92517116361901	5.25168048102148	4.84355679291645	5.41999614138769	5.57753512737695	-0.598351933681809	0.0640070852725207	0.268748226610458
Merged-chr18-33790233-4	chr18	33790128	33790328	+	679.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4664.0	NR_038152	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	3.6926248133833	3.8917812255395	3.96261295206545	3.87074411537849	4.09190363502128	3.87133602637277	4.16596919153107	4.14119779816516	0.584531608877043	0.171060610415938	0.464162889513089
Merged-chr4-62681634-4	chr4	62681543	62681743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310706, intron 1 of 6)	intron (NM_001310706, intron 1 of 6)	7669.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	6.52085558414147	6.40997959757229	6.75495613060154	6.79818036504014	6.29148195244599	6.26508926518535	6.18354994615923	6.10458261956463	-0.626642743430694	0.00576306361151886	0.0527532284984955
Merged-chr12-76392968-5	chr12	76392881	76393081	+	908.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11195.0	NM_001002012	15512.0	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	4.11004870519563	4.15483568691692	3.97276632679414	4.05186898437111	3.88472296116027	3.88196912763279	3.69066975275175	4.06385694663244	-0.515233154708355	0.235112472820541	0.545095525599075
Merged-chr2-90650175-4	chr2	90650058	90650258	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27057.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	5.70931997598263	5.53163167410232	5.60682779653762	6.19773745090238	5.40349966620111	5.26641031345828	5.86463117166845	5.86901032271557	-0.300595620524758	0.346540099777866	0.654753888817761
Merged-chr6-4977647-4	chr6	4977541	4977741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	MTE2a|LTR|ERVL-MaLR	74321.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	6.03836084328234	6.71256644266707	6.16499956753301	6.36500920164081	5.79833666354288	6.02872084593206	5.94117092617019	6.23778686371123	-0.533960250347143	0.0439223182366475	0.213592040019562
Merged-chr14-77878531-1	chr14	77878431	77878631	+	681.5	f1_c57bl6.idr	Intergenic	Intergenic	-3614.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	2.67832427315756	2.46243078599288	2.51661873516924	2.46013533904163	3.18507904661158	3.19482517568743	2.88090599425455	3.58865295670001	3.32451441973848	3.94432324111685e-06	0.000120288339322818
Merged-chr17-12758949-2	chr17	12758849	12759049	+	741.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	10757.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	3.26869327382997	3.37735765003507	3.26915038923707	2.53534957571104	3.30140942400481	3.26340258044843	3.13681658309883	3.47939791009293	0.499787006604156	0.462262500476561	0.743814597192811
Merged-chr8-46837201-4	chr8	46837096	46837296	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	97451.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	5.30981037708661	5.14477974033698	5.01941932808888	5.23189338754313	5.33067387472104	5.15924912995183	5.22559579906603	5.27781083310459	0.128424566246351	0.660258323346977	0.858757569392328
Merged-chr10-17522341-4	chr10	17522226	17522426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-200902.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	6.64260507257419	6.7168875935329	6.76080890924461	6.72427732959474	6.67820892253371	6.84996538042077	6.42964445788078	6.34716232000333	-0.172025364125754	0.427358012249026	0.71854208328636
Merged-chr2-32260833-4	chr2	32260710	32260910	+	879.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011675)	promoter-TSS (NM_011675)	-705.0	NM_011675	22245.0	Mm.425076	NM_011675	ENSMUSG00000002550	Uck1	URK1|Umpk	uridine-cytidine kinase 1	protein-coding	4.50345827126133	4.53004705626388	3.80557642200123	4.02922442324334	4.33003635094682	4.5962262346264	4.31975183360053	4.57608344489484	0.497542655375799	0.250631864139766	0.56181033751982
Merged-chr11-78037933-4	chr11	78037818	78038018	+	847.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040403)	promoter-TSS (NM_001040403)	-23.0	NM_001040403	14252.0	Mm.130227	NM_008028	ENSMUSG00000061981	Flot2	AI573412|Esa|reggie-2	flotillin 2	protein-coding	4.41368783416296	4.11599165908026	3.951239883459	3.84402366239861	3.98710431078816	3.96721681658142	3.83032256045341	4.04661413328322	-0.341172613464793	0.445781854429616	0.731686266117364
Merged-chr11-50134311-4	chr11	50134206	50134406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 1 of 20)	Arthur1|DNA|hAT-Tip100	2946.0	NM_029745	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	6.68702626249547	7.19050360996043	6.15541501687591	6.72735696091866	6.76243536612686	7.05813495983897	6.54490317543832	6.37986869390627	-0.0488818947726981	0.861241551623545	0.947574515069552
Merged-chr17-68214057-3	chr17	68213923	68214123	+	761.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59774.0	NM_177278	320858.0	Mm.137356	NM_177278	ENSMUSG00000041565	L3mbtl4	A730037L19Rik|D930040M24Rik	L3MBTL4 histone methyl-lysine binding protein	protein-coding	3.4163576579769	3.50010753208926	3.78348034533345	4.02097819530549	3.32315282221636	3.26181147782513	3.67325407852509	3.53070360592365	-0.835492496400109	0.127558617014193	0.397369460390093
Merged-chr5-121385112-4	chr5	121385008	121385208	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172275, intron 1 of 11)	intron (NM_172275, intron 1 of 11)	301.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	4.36138248796479	4.53389658065645	4.00036005441606	4.33063908144274	4.32185572416767	4.44562884335851	4.88088509706907	4.71237140895986	0.635159292882702	0.114545043443914	0.374380469308701
Merged-chr7-16285535-4	chr7	16285395	16285595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172297)	promoter-TSS (NM_172297)	-836.0	NM_172297	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	5.32784707540566	5.26790383521269	5.02318931917871	5.06072805990524	5.12979004391681	4.97496650849862	4.85397041033887	4.98479544511979	-0.330376743906663	0.292003941637093	0.604488172040016
Merged-chr1-181212050-4	chr1	181211957	181212157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145514)	promoter-TSS (NM_145514)	-79.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	6.00832607153674	5.95529056639091	5.83289934800369	5.75795697241266	5.80476567452012	5.80446343587762	5.82664522501793	5.8979075774951	-0.0798749784352121	0.745530732542679	0.899568230331321
Merged-chr19-12502148-4	chr19	12502048	12502248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172442)	promoter-TSS (NM_172442)	-152.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	6.97016482812315	7.51407176753289	6.94537475545437	6.96113586086449	6.9913179544477	6.92436466269297	6.91023097525257	7.01688092216617	-0.218655721683611	0.314598319909355	0.626540369746015
Merged-chr2-142694630-4	chr2	142694535	142694735	+	881.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 23 of 26)	intron (NM_001355123, intron 23 of 26)	206829.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	4.8010299821941	5.01429140986151	4.72973093381465	4.59268925419555	4.33223220994071	4.42270515084839	4.91024748432011	4.48243295962395	-0.507253426105656	0.18114588673267	0.47765583183706
Merged-chr19-46901564-3	chr19	46901458	46901658	+	702.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029810, intron 5 of 17)	intron (NM_029810, intron 5 of 17)	60793.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	3.99343190481393	3.81930040024122	3.51692746670427	3.72787310309744	3.46014649723711	3.37617918798894	3.50379746601006	3.57160057482543	-0.946548971528008	0.0593220116674159	0.256685803554711
Merged-chr18-31804497-1	chr18	31804397	31804597	+	912.6666869999999	f0_balb.idr	intron (NM_028866, intron 1 of 21)	CpG	440.0	NM_001170966	74320.0	Mm.277705	NM_028866	ENSMUSG00000024400	Wdr33	1110001N06Rik|2310011G05Rik|2810021O11Rik|8430413N20Rik|WDC146	WD repeat domain 33	protein-coding	4.94371594192543	5.2045292364281	5.13366145613635	4.59608411512978	4.77713419709821	4.68357198484386	4.52919885918719	5.00735512877395	-0.438644891960121	0.232716986268435	0.542379828180153
Merged-chr14-8135341-1	chr14	8135241	8135441	+	572.0	f0_balb.idr	intron (NM_001360314, intron 4 of 19)	intron (NM_001360314, intron 4 of 19)	37130.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	2.94019898965739	2.62578653358789	2.72412694567812	2.79668570674817	2.30707904459067	2.41272802093191	2.45632635400886	2.46212124598183	-2.22725989706025	0.00429462515228601	0.0423917797413072
Merged-chr2-60178349-4	chr2	60178259	60178459	+	945.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31577.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	4.57001091438514	4.9365620601878	4.65469666526428	4.21725434934364	4.90805222286051	4.90722267196172	4.74841355133185	4.94105354872197	0.573435151623154	0.121142023288748	0.385390724845415
Merged-chr3-102702074-2	chr3	102701958	102702158	+	685.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32712.0	NM_027533	70747.0	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding	3.31870429930464	3.54245704604835	3.0689965166168	2.96726658044622	2.96971773287142	3.31432565357354	3.46444611497997	3.52693479741832	0.332538199777556	0.579292045709208	0.815292704330909
Merged-chr14-26579960-3	chr14	26579857	26580057	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145969, intron 1 of 17)	CpG	407.0	NM_145969	211922.0	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	5.77529542122556	5.97743283876892	6.12335242057991	6.17710330985256	6.21000587954209	5.81657133993357	6.22548102883412	6.51435821674356	0.284978204707913	0.27596760243076	0.588028677545849
Merged-chr6-8546454-3	chr6	8546356	8546556	+	793.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286729, intron 2 of 7)	intron (NM_001286729, intron 2 of 7)	26398.0	NM_001286729	170772.0	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	3.96299739640251	3.97993392278783	4.27538224972576	4.44620641195958	3.8938752734713	3.7383189220679	4.04317968038256	3.96127295089237	-0.754461999910359	0.0932825901050998	0.334059241350921
Merged-chr18-31759864-4	chr18	31759690	31759890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242430)	promoter-TSS (NM_001242430)	-34.0	NM_153515	225339.0	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	7.11497255145161	7.34394211674493	6.76948018479319	7.13064681517458	6.84236699858837	7.13201969539986	7.26365281655507	7.26447304767949	0.0272249864811106	0.899796483662749	0.962817358760599
Merged-chr5-137503007-2	chr5	137502905	137503105	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_028753)	promoter-TSS (NM_028753)	-576.0	NM_028753	74097.0	Mm.290242	NM_028753	ENSMUSG00000029715	Pop7	0610037N12Rik|AI852017|Rpp20	processing of precursor 7, ribonuclease P family, (S. cerevisiae)	protein-coding	5.66858500940737	5.45683828566254	4.65568827722388	4.63766380675996	5.75957911314003	5.43532926219477	4.68104748405579	5.02566187687438	0.193924489025014	0.659047975167885	0.858080005569426
Merged-chr3-107099336-3	chr3	107099259	107099459	+	888.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-2208.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	3.52484382666652	3.71759804285283	3.58253380323967	3.29356345093353	4.08864797113073	3.80975832925053	3.72445802531717	3.33582457519288	0.744887283236299	0.155479450279796	0.441078077821691
Merged-chr8-4524630-4	chr8	4524508	4524708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026058, exon 11 of 11)	3' UTR (NM_026058, exon 11 of 11)	31203.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	5.90923285708434	5.13532103057449	5.97024206108588	5.88895954278848	5.19945684743286	5.29028244881163	5.38726757916945	5.75385250511015	-0.588612341355103	0.0722787697606344	0.288875503790559
Merged-chr1-37998548-3	chr1	37998449	37998649	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 1 of 23)	CpG	539.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	3.35624632942463	3.40823934878445	3.53499439444347	3.47444065342911	3.57356941365028	3.59412048168197	3.72372282772082	3.87214406497236	0.785153688536724	0.104345147634557	0.3551976692243
Merged-chr19-29201873-2	chr19	29201773	29201973	+	671.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49930.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	3.36772926934704	3.38562790635729	3.475459431405	3.19891224731408	3.33346801661636	3.5916286658941	3.0451330796363	3.3092665229574	-0.075502916037462	0.890537150429329	0.959043973343308
Merged-chr8-75071854-4	chr8	75071864	75072064	+	967.09375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21654.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	4.0713215818956	3.65497227566284	3.69363032472255	3.90070895225208	3.74549609184087	3.50041434997901	3.88000376633059	3.89453444261325	-0.224886548346105	0.636434034584497	0.846236608901029
Merged-chr5-136035079-4	chr5	136034966	136035166	+	898.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-3430.0	NM_175309	100647.0	Mm.3089	NM_175309	ENSMUSG00000042985	Upk3b	AI447729|AI957187|P35|PMS2L14|UpIIIb	uroplakin 3B	protein-coding	4.29732628157264	4.37756969673382	4.65114416112133	4.07101678717398	4.19330716987198	4.3317032674906	4.55873324890043	4.24934806980409	-0.0344009079596905	0.932969424916445	0.975868195387622
Merged-chr5-77357874-4	chr5	77357787	77357987	+	862.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008048, intron 1 of 4)	intron (NM_008048, intron 1 of 4)	47403.0	NM_153798	231329.0	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	4.19311551349243	4.18266993506019	4.66017693695311	4.20356998330459	3.9535817531453	4.11558677708338	4.42748069472986	4.23727142278571	-0.318665522633586	0.4518918296062	0.736332407104358
Merged-chr11-4947170-2	chr11	4947070	4947270	+	723.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243043)	promoter-TSS (NM_001243043)	-351.0	NM_001243043	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	2.77237321624627	2.78244000941195	2.94564586093258	2.49130544170583	2.85599701089948	2.60320733361612	2.63493656813663	2.70820893440699	-0.202446682537169	0.765064648802075	0.908002411663103
Merged-chr1-52141647-4	chr1	52141537	52141737	+	797.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205313, intron 11 of 24)	RLTR28|LTR|ERVL	22015.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	3.93700742057971	3.63464169954749	3.88279062014505	3.80830027239855	4.23140881395477	4.21644290456482	4.28841855589958	4.65480534046664	1.39453806018899	0.00101337015730112	0.0135827505555763
Merged-chr9-105053962-4	chr9	105053851	105054051	+	827.445801	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053159, intron 1 of 9)	intron (NM_053159, intron 1 of 9)	683.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	4.17025114363754	4.24378955830528	4.90317113413973	5.01789021746677	4.11160292679723	3.75734595763794	4.10291455214523	4.01146122098183	-1.5587097958315	0.00108924564768648	0.0144056885835518
Merged-chr19-29478820-4	chr19	29478709	29478909	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43178.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	5.47801860086362	4.91792591390124	5.82031451081525	5.60825503891445	5.30235223480461	4.70351750690356	4.90800884691573	5.44865382593126	-0.659005016232374	0.0747912496256334	0.294950764978833
Merged-chr1-39782095-4	chr1	39781986	39782186	+	675.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	23246.0	NM_001177348	100042065.0	Mm.209678	NM_001177348	ENSMUSG00000091937	Gm3646	-	predicted gene 3646	protein-coding	4.17662322090917	3.75650989487394	4.17732588868063	3.39071431471027	4.1352987396669	3.93969470189387	3.57679558414904	3.39026781702343	-0.327041085337041	0.563818059795622	0.806486928766928
Merged-chr15-3982909-4	chr15	3982811	3983011	+	959.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145930, exon 6 of 6)	3' UTR (NM_145930, exon 6 of 6)	-3338.0	NM_134099	106052.0	Mm.234191	NM_134099	ENSMUSG00000022184	Fbxo4	1700096C12Rik|AI851261|AW494535|Fbx4	F-box protein 4	protein-coding	4.43837039867747	4.50146459332367	4.43905755458105	4.77683437129834	4.87539440762663	4.221542960089	4.33084492965899	4.43627839397908	-0.113734132621729	0.779343676006266	0.913916496662987
Merged-chr7-88357257-4	chr7	88357155	88357355	+	844.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73018.0	NM_028238	72433.0	Mm.276669	NM_028238	ENSMUSG00000030559	Rab38	2310011F14Rik|AU043391|cht	RAB38, member RAS oncogene family	protein-coding	4.00315380959006	4.03677092750758	3.56381113305573	4.26160559042225	4.0409646829805	3.86529370578416	3.9865121464945	3.85336950246235	-0.171592900487091	0.716223273388142	0.886501754160268
Merged-chr1-37541187-4	chr1	37541135	37541335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173870)	promoter-TSS (NM_173870)	-219.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	6.16024740657185	6.12375277927551	6.01434715228768	6.23844257477256	6.25103789829041	6.27561909825984	6.06926946682872	6.07504625720151	0.0433429904524912	0.850509644478831	0.943627844188644
Merged-chr3-104701150-4	chr3	104701043	104701243	+	971.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62479.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	4.95740990539333	5.11690459102756	4.73124370215754	4.93016590591779	4.82047829357886	5.1309248568447	4.9343471528028	4.9890637651633	0.0437436993063166	0.892188048032223	0.959609735423941
Merged-chr6-88198673-4	chr6	88198559	88198759	+	862.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008090)	promoter-TSS (NM_008090)	-5.0	NM_008090	14461.0	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	3.81039613154817	4.17738627243847	4.03929002627273	4.22846525516206	4.29701730613896	4.4920720791849	4.495228495949	4.36043157428551	0.780721332923185	0.0565272256542243	0.249021187985562
Merged-chr18-5986027-4	chr18	5985922	5986122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150076.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	5.52807144957001	5.64326350256997	5.2704891573831	5.36124852128824	5.27469873556247	5.08741381871564	5.14602399128773	5.76081985264312	-0.194674707988639	0.535290578660958	0.789648104016425
Merged-chr6-125603390-4	chr6	125603295	125603495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011708, exon 14 of 52)	exon (NM_011708, exon 14 of 52)	50447.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	6.37246869458158	6.28611736023342	5.43646174551689	5.79085395878876	6.04884181216424	6.29296987329884	6.38924520927692	6.0716989354649	0.285898823318044	0.332657170946913	0.643569383856011
Merged-chr6-119175269-4	chr6	119175297	119175497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033379, exon 1 of 9)	exon (NM_001033379, exon 1 of 9)	144.0	NM_001033379	319618.0	Mm.250197	NM_001033379	ENSMUSG00000041477	Dcp1b	B930050E02Rik	decapping mRNA 1B	protein-coding	6.28901584472294	6.00784973647398	6.59132131261743	6.28823886465147	5.76713063656238	6.1184746771866	5.83819558613324	6.2306640926118	-0.481618703736166	0.0646044083667358	0.270196673314289
Merged-chr5-142908278-4	chr5	142908246	142908446	+	971.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1592.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	3.58242974707327	4.04569267365019	3.6460787427193	3.33714122875233	4.26664442463304	4.32406032316954	3.74921907171556	4.27131877568615	1.37629425649681	0.00555158495604342	0.0513123315915095
Merged-chr14-79331444-2	chr14	79331344	79331544	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29809.0	NM_025427	66214.0	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	3.16782062504695	2.94692963991554	3.00207166516446	2.75708117305762	2.81337643680422	2.69505192040561	2.93089374442694	3.16636691469336	-0.249479687684718	0.695999160676449	0.877025231607077
Merged-chr17-29486035-3	chr17	29485909	29486109	+	805.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-5036.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	3.31924550962505	3.36097721042418	3.49137654143161	3.20049216977521	3.48324210264892	3.2343991698374	3.67284104036617	3.68721509657953	0.659854555817858	0.204445452390512	0.507736047440922
Merged-chr3-90491014-4	chr3	90490910	90491110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133854)	promoter-TSS (NM_133854)	3.0	NM_133854	20615.0	Mm.331182	NM_133854	ENSMUSG00000001018	Snapin	25kDa|AA407989|AV026596|Bloc1s7|Snap25bp|Snapap	SNAP-associated protein	protein-coding	7.23886965411799	7.40775887751322	7.33455944304008	7.21039643041266	7.04092821933014	7.37275571351978	7.36662839288891	7.19070929895992	-0.0735769859777294	0.696105452315383	0.877081533497781
Merged-chr4-48419269-4	chr4	48419215	48419415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281978, intron 15 of 18)	intron (NM_001281978, intron 15 of 18)	54148.0	NM_172304	269536.0	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	5.74168129668044	5.64903093898414	6.16804965818122	6.29281141836798	5.49696343191747	5.32760539070329	5.85593526696902	6.03066416321723	-0.480161825780109	0.121405393824498	0.385902493057382
Merged-chr11-120628069-4	chr11	120627904	120628104	+	975.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010756)	TTS (NM_010756)	-3002.0	NM_153056	209011.0	Mm.292957	NM_153056	ENSMUSG00000025138	Sirt7	-	sirtuin 7	protein-coding	4.15455193759846	4.28110657465965	3.92295035431039	3.64550095222658	4.16625633794409	3.82183135463958	3.80192920460167	4.01852454721321	-0.126934422620127	0.788968763240998	0.918274700744505
Merged-chr14-61331420-4	chr14	61331300	61331500	+	869.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21647.0	NM_177337	219144.0	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	4.13868046491828	3.92597775938417	3.76178278077961	4.00052327418748	3.88574755424843	3.98796074168604	3.57376569349002	3.86491353953673	-0.360789261435208	0.428074261917697	0.719151653480075
Merged-chr9-51963427-4	chr9	51963315	51963515	+	983.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001301728, exon 1 of 4)	exon (NM_001301728, exon 1 of 4)	187.0	NM_001301728	14148.0	Mm.1061	NM_007996	ENSMUSG00000032051	Fdx1	-	ferredoxin 1	protein-coding	4.59053468132907	5.11859709818895	5.49046846988311	4.85658148836219	4.67573852870099	4.53217468505774	4.42974572176952	5.15977817965566	-0.642748590528751	0.114167638423058	0.3737794183945
Merged-chr4-12305418-3	chr4	12305318	12305518	+	908.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133403.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	3.64412589167718	3.84717112295823	4.14137753865059	3.94545839046289	3.5601962886026	4.13522892519619	3.90000590368101	3.96253436718035	-0.0274356145822621	0.953933966886497	0.983588513160575
Merged-chr7-96879051-1	chr7	96878951	96879151	+	794.0	f0_balb.idr	intron (NM_011858, intron 27 of 32)	intron (NM_011858, intron 27 of 32)	-72476.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	3.45793058927654	3.49308062616434	3.45843334719134	3.52135650900208	2.92531854820948	3.21761785840198	3.16164776343238	3.29265545588679	-1.29196577169592	0.0216672601093872	0.135001217377982
Merged-chr16-95705106-19	chr16	95705111	95705311	+	942.236816	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011809, intron 1 of 9)	intron (NM_011809, intron 1 of 9)	2804.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	4.34479482708527	4.16432662995135	4.30287137877152	4.14958044503142	4.41926139974601	4.42984148142777	4.14833149979071	4.25615239185747	0.216642216015489	0.576471534314695	0.8135268515997
Merged-chr15-98985867-4	chr15	98985774	98985974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045991)	promoter-TSS (NR_045991)	-91.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	6.95975129127787	7.60196191531429	6.69846669879284	6.39318228980203	7.52930781190087	7.36613586764235	7.09702779097082	7.03262288608519	0.384857461542697	0.179771097312313	0.476031457258849
Merged-chr18-4836991-4	chr18	4836884	4837084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045881, intron 5 of 9)	intron (NR_045881, intron 5 of 9)	24498.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	5.48824464439755	4.96351668219965	5.19858690519711	5.49743662404423	5.17849114308209	5.30765195801869	5.40888365105832	5.34851690207204	-0.0140939859188957	0.963463518544902	0.98696634889338
Merged-chr4-126310077-3	chr4	126309976	126310176	+	875.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199473, intron 3 of 3)	intron (NM_199473, intron 3 of 3)	11627.0	NM_133883	100206.0	Mm.11285	NM_133883	ENSMUSG00000042558	Adprhl2	AI836109|Arh3	ADP-ribosylhydrolase like 2	protein-coding	3.54091279587662	3.74881899515807	3.76420165107178	3.53211097041962	3.71304206694522	4.07708409180246	3.84585913381228	3.70983805991084	0.583706640899716	0.209387449882048	0.513940748725158
Merged-chr2-170153025-3	chr2	170152929	170153129	+	704.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-10354.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	3.34501288288315	3.6388597852881	3.66754056135961	3.35387610778983	3.32566118255385	3.45964296394522	3.27202471119741	3.66527814727987	-0.229100456646307	0.663192124683345	0.860453732940263
Merged-chr10-57721224-4	chr10	57721153	57721353	+	811.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	-63670.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	4.02692973311689	4.15254585910103	4.29838020608551	4.10846841009274	4.10415206271646	4.04499569233602	4.2785988375947	4.07440353458757	-0.0465147169783968	0.908471659711841	0.966056631308673
Merged-chr17-85464160-1	chr17	85464060	85464260	+	744.0	f0_balb.idr	Intergenic	Intergenic	154236.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	3.44773379730737	3.60889612664059	3.33717217597038	3.37802449755686	3.23129357254819	3.4505441635948	3.14088206802375	3.39204773918913	-0.499416226789359	0.346932410830135	0.655021275078997
Merged-chr7-27354226-3	chr7	27354122	27354322	+	878.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138676, intron 6 of 17)	intron (NM_138676, intron 6 of 17)	1786.0	NM_138676	192192.0	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	3.35409915829128	3.43201967448674	3.42598187689165	3.327335218529	3.9228036468317	3.8637742612833	4.36287999655459	4.57023509751504	2.39566428642239	1.56496430034891e-06	5.25684728336646e-05
Merged-chr13-43094768-3	chr13	43094667	43094867	+	963.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001302636, exon 7 of 13)	exon (NM_001302636, exon 7 of 13)	-28072.0	NM_001005748	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	4.47395984413845	4.3168390313282	4.39280928264865	5.04193589367804	4.12266391649665	4.2371023001398	3.98554518379172	4.25665764328704	-1.09476805513959	0.0114955732371808	0.0870917716168665
Merged-chr14-77904371-4	chr14	77904282	77904482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178825, exon 1 of 7)	5' UTR (NM_178825, exon 1 of 7)	143.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	6.35859127798964	6.13478704397854	5.8515670817558	6.1040016615334	6.31432072360222	6.07768656191562	6.18644578962337	5.74335005096719	-0.0260705968584457	0.919913221790681	0.970406583631903
Merged-chr10-75146209-4	chr10	75146113	75146313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081412, intron 8 of 22)	intron (NM_001081412, intron 8 of 22)	-65860.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	7.00002869909915	7.04155163287582	6.85698083785129	7.52691536521772	6.84190128681049	6.51094780160769	6.92826748340927	6.9585953733281	-0.451208716770828	0.0566257476467387	0.249267976637354
Merged-chr12-27312330-2	chr12	27312214	27312414	+	800.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	30404.0	NM_009234	20666.0	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	3.64841901426361	3.77477027396478	3.28504195152601	3.98855159612328	3.02950734600081	2.97992464518873	2.86091679509394	2.8667185779691	-3.31055022095375	8.3483199311649e-06	0.000234408309420271
Merged-chr16-35739752-4	chr16	35739652	35739852	+	960.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 2 of 8)	intron (NM_153550, intron 2 of 8)	29604.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	6.24524948455895	6.10239797727257	5.97753607766268	5.92486377585336	6.00951679552327	6.01794656376926	5.71365317533418	5.08327351741246	-0.478941022457333	0.117348253164139	0.378843038460189
Merged-chr17-46347358-4	chr17	46347283	46347483	+	892.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY3-int|LTR|ERVK	-19360.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	4.27310661452014	4.2784803259232	4.35740752105111	4.1306963114203	4.24927192522888	4.16014972887166	4.21109798335072	4.18149673310067	-0.121206898403213	0.756616251245324	0.904386007179465
Merged-chr14-65837382-4	chr14	65837323	65837523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145944, exon 1 of 9)	5' UTR (NM_145944, exon 1 of 9)	121.0	NM_145944	67179.0	Mm.214576	NM_145944	ENSMUSG00000022035	Ccdc25	2610528H13Rik|NSrp70	coiled-coil domain containing 25	protein-coding	5.81354429893049	5.70212110385301	5.79141036284856	5.62317502561168	5.4564414402529	5.70931089129994	5.78496280053655	5.73970318271496	-0.0935041403678317	0.721148522447763	0.888656454642962
Merged-chr6-115331183-4	chr6	115331068	115331268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-29783.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	6.20094650127152	5.79771607109356	6.02378213234127	6.39973148596437	5.9613645091545	5.86253958151727	5.7865796595524	5.99803215847403	-0.365734479956606	0.162845791569449	0.452364775328072
Merged-chr13-24444905-4	chr13	24444805	24445005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111110, intron 11 of 16)	L1MEf|LINE|L1	29783.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	6.74609988717556	6.45659198887537	6.92379133307889	6.84403802825134	6.67632826182985	6.95239566364856	6.78351180488957	6.88033458277871	0.0910917862883853	0.669130608009491	0.863397557169305
Merged-chr9-45953574-4	chr9	45953458	45953658	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152206)	promoter-TSS (NR_152206)	-428.0	NR_152206	100101457.0	Mm.397964	NR_152206	ENSMUSG00000111329	A830035O19Rik	-	RIKEN cDNA A830035O19 gene	ncRNA	5.90316145726309	5.58449019983166	5.63588940912607	5.73983385182758	5.32322116616449	4.97119463637104	5.20193789333774	5.70449751511693	-0.674259699676223	0.0258850696135702	0.152044344778372
Merged-chr6-124916507-2	chr6	124916407	124916607	+	782.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152158)	promoter-TSS (NR_152158)	-356.0	NR_152158	442825.0	Mm.446713	NR_152158	ENSMUSG00000055818	A230083G16Rik	-	RIKEN cDNA A230083G16 gene	ncRNA	3.15519955512635	2.8253706130413	2.79183279278627	2.56862517876325	2.75575730247093	2.9707375695472	3.0327871246415	3.20545926388622	0.657586897957051	0.315295090456373	0.627105605858262
Merged-chr9-101182199-2	chr9	101182117	101182317	+	804.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161362, intron 4 of 13)	intron (NM_001161362, intron 4 of 13)	16856.0	NM_172144	235542.0	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	3.29377564352075	3.18294351942134	3.23537433029325	3.35674172306987	3.31759816620702	3.34639691173594	3.44155385824835	3.34869351016107	0.315664006811537	0.542945081514631	0.794096368322065
Merged-chr5-32690815-2	chr5	32690715	32690915	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55527.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	3.08589707894699	3.19958729138315	3.15104529451565	2.6470678395555	3.17996259812424	3.44584488885944	3.46864875705626	3.48241747676729	1.40038332042529	0.0208887938877918	0.131859122041427
Merged-chr10-51534822-4	chr10	51534721	51534921	+	971.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	43923.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	5.1677448079959	4.97082078725409	4.96053541708594	3.44863137016202	4.80864642065529	4.84988831322653	4.56640596896248	4.78438209569721	-0.131722274541958	0.856003738407242	0.945801681068115
Merged-chr3-57667203-4	chr3	57667122	57667322	+	734.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033349)	TTS (NM_001033349)	-15538.0	NM_175095	52245.0	Mm.21901	NM_175095	ENSMUSG00000036513	Commd2	1190017G07Rik|AI047739|D3Ertd176e|HSPC042	COMM domain containing 2	protein-coding	3.8749057160978	3.80155810001773	3.67150395852499	3.53242694652277	3.85354902162577	3.7328105396015	3.6572174780918	3.96388808206937	0.279950819586838	0.546640438154936	0.796486196515084
Merged-chr12-12262232-4	chr12	12262164	12262364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	CpG	125.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	5.73147431387024	6.70974168372679	6.10207653093654	5.73135074320461	5.96737711970953	6.03704159576827	5.90030545384491	5.75490796909392	-0.3345259559275	0.284047260142989	0.596035490823689
Merged-chr10-60367244-4	chr10	60367142	60367342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 4 of 6)	(CCCCCT)n|Simple_repeat|Simple_repeat	20391.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	6.79505293721749	6.50139098320473	7.13347783570319	7.16958166235209	6.42775684951252	6.32114529660472	6.55230005529616	6.79140993928264	-0.572094484741879	0.0199745998683906	0.127903206552013
Merged-chr17-25116056-4	chr17	25115926	25116126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163661)	promoter-TSS (NM_001163661)	-59.0	NM_001163661	71718.0	Mm.288702	NM_027880	ENSMUSG00000024170	Telo2	1200003M09Rik|AI415602|Tel2|mKIAA0683	telomere maintenance 2	protein-coding	7.75562053489679	8.09274635489388	7.38326252400195	7.337583371579	6.28789393281304	6.87538258364641	6.39031231220702	6.53434075810791	-1.5749241059727	4.1533238310795e-10	2.86185321367287e-08
Merged-chr5-135537951-4	chr5	135537866	135538066	+	869.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	MTEa|LTR|ERVL-MaLR	7156.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	4.09932545429067	3.8073045972614	3.86048002654024	3.85500441679875	3.97608855842331	4.03375957922147	3.99211812649118	4.05301743147926	0.29722595629938	0.482388778163442	0.75723418393445
Merged-chr2-165285802-4	chr2	165285716	165285916	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252575, intron 1 of 9)	intron (NM_001252575, intron 1 of 9)	1971.0	NM_001252574	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	5.68006114724393	5.73967140303695	5.09295326741623	5.46864218979565	5.61481542831052	5.34393479737073	5.03109289684275	5.60447578685368	-0.159941069724387	0.61683965924496	0.835175859416732
Merged-chr4-105245847-4	chr4	105245787	105245987	+	795.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88540.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.75320000592449	3.85361406752343	3.75369622086066	3.61882751258076	4.26171456082663	4.13998490659124	4.17287613218401	4.18972674773711	1.25208841530994	0.00268663365225504	0.0293165562983077
Merged-chr2-45113702-2	chr2	45113599	45113799	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001355289)	promoter-TSS (NM_001355289)	-420.0	NM_015753	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	4.62296870451489	5.16742476228941	5.17960572323649	4.33388070194551	5.28008163658891	5.12515365390641	5.26759473365352	5.04971231054735	0.623666886977428	0.0953391115168301	0.337921652158971
Merged-chr1-144007540-4	chr1	144007458	144007658	+	990.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3409.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	5.53612462163443	5.34390533218459	5.06842831570414	5.55020695050205	5.10556043510577	5.05779747651404	5.26881659906802	4.99223806354625	-0.531794942702911	0.0837861260488694	0.314729677873897
Merged-chr7-139366744-3	chr7	139366650	139366850	+	897.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22359.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	3.29990285056521	3.43033849753759	3.56883900307844	3.57689477035476	3.25329931023706	3.21667688434884	3.40168043961288	3.46649300639904	-0.508863713679082	0.332359816837487	0.643434879668289
Merged-chr4-132816605-4	chr4	132816506	132816706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20242.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	6.10502269107429	5.73941404572958	5.89232660711811	5.91749061900485	5.66668120395319	6.27998889980373	6.01474001714456	5.99946051331729	0.12451053364443	0.637372234260771	0.846740668217911
Merged-chr7-19589479-4	chr7	19589369	19589569	+	802.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_125836, intron 6 of 17)	B3|SINE|B2	12182.0	NM_022409	63872.0	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	4.22199714140453	4.04431809826191	3.76912645288715	3.77721682889047	4.16373005256038	4.21363560459519	4.07044978039717	4.3791567608902	0.664025814959544	0.120303251135031	0.383935675111326
Merged-chr4-123342904-4	chr4	123342812	123343012	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001256019, exon 1 of 7)	5' UTR (NM_001256019, exon 1 of 7)	340.0	NM_001256019	12163.0	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	4.4149221175469	4.69812150698755	4.32299630044439	4.47005890820144	4.61791028161777	4.54548165417666	4.77527906841604	4.45673738768996	0.264180129455137	0.467745135960926	0.747125948872246
Merged-chr10-24636142-4	chr10	24636044	24636244	+	964.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40702.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	5.36766600323495	5.06855998016719	4.96514520058797	5.23847834573633	5.30954052288816	5.10409523747393	5.01190738722036	4.76522816028553	-0.186179216967208	0.567944325783155	0.808384841723708
Merged-chr11-20762251-4	chr11	20762175	20762375	+	905.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F3|LINE|L1	-20719.0	NM_181411	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	4.24665300237003	4.26132188501215	4.02861952160823	3.46419063023128	4.34949274453769	3.94525077172052	3.96284309961227	3.64179270507866	-0.0779287056192604	0.881126731692934	0.955322489265647
Merged-chr15-67414291-4	chr15	67414188	67414388	+	836.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187519.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	3.79030745216514	3.55231931851038	4.11661556944697	3.71903648082686	4.050077716063	3.91125660200996	3.92364444069722	3.78869773369521	0.350995510441434	0.446696227415734	0.732376440116656
Merged-chr11-97986475-4	chr11	97986362	97986562	+	833.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028199)	promoter-TSS (NM_028199)	-16.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	4.14169915801531	4.20518874881983	3.99334299251113	3.86794747301592	4.33723553835837	4.1694226015706	4.16986794230294	4.43147449819687	0.604383835931079	0.136699957903322	0.411180117630179
Merged-chr14-43922327-4	chr14	43922205	43922405	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053112)	TTS (NM_053112)	1063.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	5.49355120037557	5.56193480740047	5.60345382460362	4.7909311131519	5.54669497541495	6.03480106497337	5.87337142356363	5.49062833590531	0.622385328062957	0.0619487449492745	0.263296145912079
Merged-chr12-64967378-1	chr12	64967278	64967478	+	549.0	f0_balb.idr	exon (NM_177805, exon 1 of 20)	exon (NM_177805, exon 1 of 20)	1636.0	NM_177805	328108.0	Mm.138465	NM_177805	ENSMUSG00000035614	Togaram1	A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding	3.34371615215666	3.51871784922258	3.92548734237238	3.29512100783879	3.50611618333659	3.45894138670493	3.27032499056894	3.40221938617469	-0.410394323506254	0.452233261001965	0.736617734348328
Merged-chr18-89160033-4	chr18	89159927	89160127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37400.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	6.18612542901116	6.2643785214332	6.02460540684746	5.38788987353304	6.21411898761498	6.20064045312979	6.2468113740055	5.97617557514915	0.267443186905601	0.358332432466958	0.664365406689102
Merged-chr3-138527168-4	chr3	138527079	138527279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313980)	promoter-TSS (NM_001313980)	-89.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	8.69480262678655	8.8267316205618	8.37230387922284	8.45855627717343	8.70756163679722	8.71048804241325	8.48362937793801	8.56066590016537	0.0264409778722751	0.876632538809731	0.953730645470964
Merged-chr13-90923502-1	chr13	90923402	90923602	+	1000.0	f1_c57bl6.idr	intron (NM_024175, intron 1 of 3)	CpG	380.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	5.26634137338632	5.46272096038288	5.97597249345774	5.42035927692278	5.78183535844852	5.9777263509405	5.6792213506193	5.84507102041862	0.4534454027373	0.114254072194883	0.373859772452381
Merged-chr9-77689385-1	chr9	77689285	77689485	+	675.0	f0_balb.idr	Intergenic	Intergenic	52653.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	3.37102115031237	3.33643143257167	3.31801046982585	3.43603341640979	3.25806759391959	3.2513051674705	3.13232106283711	3.07743720477008	-0.702200614914233	0.195048690672653	0.495781550312065
Merged-chr18-54900108-4	chr18	54900020	54900220	+	973.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 3 of 8)	intron (NM_001360787, intron 3 of 8)	90060.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	4.77314754874993	4.52776627902574	4.32873809601327	4.50941157682375	4.58699638151149	4.6409074770862	4.10386970264656	4.93039783294814	0.122907805122919	0.759077385302646	0.905467910117288
Merged-chr16-29453450-4	chr16	29453370	29453570	+	985.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164613, intron 13 of 21)	intron (NM_001164613, intron 13 of 21)	-74738.0	NM_175650	268878.0	Mm.9823	NM_175650	ENSMUSG00000048939	Atp13a5	C630015F21Rik	ATPase type 13A5	protein-coding	5.36503222248917	5.63995383430982	5.5151514462794	5.88456342365978	5.52581750771569	5.51190174115611	6.02476774400352	5.29743540492977	-0.0224590528124569	0.942019112867902	0.979058454594117
Merged-chr2-80045143-4	chr2	80045050	80045250	+	945.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	-6248.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	4.72805190808507	4.33812880838756	4.93408646540371	4.74448952190472	4.25120677652385	4.74596954437921	4.63044506080888	4.89874485330725	-0.12416319916478	0.750032760810738	0.901576629816678
Merged-chr5-142936486-4	chr5	142936391	142936591	+	867.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23864.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	4.31023308641548	4.04530886902347	3.83459478949428	3.92847992469219	5.00653480625183	4.61019961492365	4.10198290321968	4.47463121521938	1.33162654154733	0.00238388169831181	0.0267468971317996
Merged-chr15-25858263-4	chr15	25858180	25858380	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 1 of 8)	intron (NM_001034851, intron 1 of 8)	14982.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	4.54776273228536	4.48261363043185	4.38631161234185	4.76454450674995	4.25812777201547	4.16663400102662	4.27812708851841	4.42603643387648	-0.663424520201146	0.0847360368428184	0.316759958323353
Merged-chr7-44815955-4	chr7	44815900	44816100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030693)	promoter-TSS (NM_030693)	-88.0	NM_053074	18226.0	Mm.2565	NM_053074	ENSMUSG00000109511	Nup62	D7Ertd649e|Nupc1|p62	nucleoporin 62	protein-coding	8.4166657112917	8.56623482626058	8.0222573419926	8.09806011483022	8.23605945044801	8.42805292237461	8.27895845866668	8.14238525468679	-0.0238591129632226	0.897801803066908	0.961810820572822
Merged-chr13-59875861-4	chr13	59875757	59875957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52710.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	8.41991346763355	8.53104252748684	8.71721961405524	8.60549398451159	8.66770715709588	8.98948938862679	8.89143404227211	8.80969242253049	0.334906806266906	0.0333207586546978	0.179432461815913
Merged-chr12-116620066-4	chr12	116619891	116620091	+	886.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011215, intron 2 of 22)	intron (NM_011215, intron 2 of 22)	134271.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	3.29689584676359	3.70518471360052	3.61139936665888	3.5653721721913	3.64359001041499	3.6119049736802	3.75330481805511	4.21965820816629	0.820963552674648	0.106600783143767	0.360017894448198
Merged-chr8-105566083-4	chr8	105566001	105566201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013477)	promoter-TSS (NM_013477)	-37.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	8.60008375021458	8.53117700458005	8.25642479623108	8.24903026973457	8.52027790116562	8.72892767850457	8.57978093854422	8.23309792834089	0.140850046982971	0.433036151911218	0.722758873865112
Merged-chr2-181483692-4	chr2	181483525	181483725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9581.0	NM_183181	241850.0	Mm.87455	NM_183181	ENSMUSG00000055882	Abhd16b	1700095H12	abhydrolase domain containing 16B	protein-coding	7.04014088068675	7.1514526125323	6.73690629101071	6.37039734450754	6.34358742000444	6.41403883717878	6.0047112713747	5.7669261184776	-1.011281850051	0.000340292914804395	0.00562772058151999
Merged-chr2-166682671-4	chr2	166682578	166682778	+	956.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	31154.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.39125369005906	4.35090398319621	4.39193991451453	4.59875813181701	4.46143390335856	4.12920373757626	4.24176667405608	4.25757866096138	-0.379013688766185	0.330837210114518	0.642094846510006
Merged-chr10-62920120-2	chr10	62920020	62920220	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175194)	promoter-TSS (NM_175194)	-513.0	NM_175194	73132.0	Mm.37457	NM_175194	ENSMUSG00000071253	Slc25a16	3110021G18Rik|GDA|GDC|HGT.1|ML7	solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16	protein-coding	3.23500386613386	3.15903733145188	3.06276859348387	2.92182384989317	2.88866722388577	3.10974949851198	3.11113070820978	3.23359618492997	-0.0206564725183637	0.971673795192007	0.989736248826158
Merged-chr9-96536450-4	chr9	96536323	96536523	+	861.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-57748.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	4.57588645905225	4.12790185096388	4.35948048850358	3.30233446742178	3.89024294421694	4.27393610379354	4.07897566841573	4.14223048959491	-0.188808157407057	0.724517033985756	0.890296037325371
Merged-chr1-193130243-4	chr1	193130150	193130350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151719)	promoter-TSS (NR_151719)	1.0	NM_145415	215193.0	Mm.173758	NM_145415	ENSMUSG00000016181	Diexf	AA408296|AW045375|Def	digestive organ expansion factor homolog (zebrafish)	protein-coding	7.22436843787895	7.23413266427793	7.3913923417599	7.10558677389121	7.21708867783246	7.36894757766046	7.32536519294432	7.51474327213396	0.165227885466955	0.373531843186156	0.677113210162732
Merged-chr15-78591960-4	chr15	78591861	78592061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_B_Mam|LINE|RTE-X	-5086.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	6.1644881430179	5.66472625600958	6.43727002481425	6.28003494127594	6.27303207277014	6.07515265917018	6.66614601216623	6.18120458007192	0.229115049388314	0.407151017887833	0.703537361109727
Merged-chr1-175693581-4	chr1	175693488	175693688	+	950.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010098)	promoter-TSS (NM_010098)	-956.0	NM_010098	13603.0	Mm.32744	NM_010098	ENSMUSG00000026525	Opn3	ERO|Ecpn	opsin 3	protein-coding	4.61778926693643	4.42443815121932	4.92404155315486	4.97800470206047	4.66118369511371	5.0268516332672	5.08726869611775	4.85096635310212	0.288003323973279	0.428491339311853	0.719533477419986
Merged-chr5-99455822-3	chr5	99455687	99455887	+	955.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	MTC|LTR|ERVL-MaLR	-202860.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.70482128356205	3.78318166575852	3.70534383243552	3.22235306251131	4.01710809573806	3.97972919465805	3.74224190599124	3.70323040298968	0.781036584612075	0.118887539570973	0.381409432738762
Merged-chr13-83649976-3	chr13	83649854	83650054	+	946.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347576, intron 6 of 10)	intron (NM_001347576, intron 6 of 10)	-71427.0	NR_152244	320203.0	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik|ECONEXIN|EyeLinc1|Visc-1	RIKEN cDNA C130071C03 gene	ncRNA	3.69951902115588	3.14378310308925	3.31455191605026	3.68093668057742	2.9295555647254	3.10845836320324	3.05774459232166	3.1950988370519	-1.61340717425306	0.0077931862944951	0.0659538145251782
Merged-chr15-98892365-4	chr15	98892257	98892457	+	992.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007857, exon 3 of 3)	3' UTR (NM_007857, exon 3 of 3)	6183.0	NM_007857	13363.0	Mm.324688	NM_007857	ENSMUSG00000023000	Dhh	C78960	desert hedgehog	protein-coding	4.86845360822365	5.0141583679766	4.57214922531657	4.74411443738435	5.07566545150554	5.42927660275184	5.02163493356651	5.19818929479954	0.731261974674386	0.0248542023357677	0.147856019060394
Merged-chr10-60831563-4	chr10	60831461	60831661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359273)	promoter-TSS (NM_001359273)	20.0	NM_029770	107449.0	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	7.80746161842612	8.11189698228738	8.27327058763978	8.08022864251855	7.59548989848075	7.7863575451853	7.76318480043277	7.43934472576676	-0.556357627105879	0.00245546582370113	0.0273860234824856
Merged-chr2-173783921-4	chr2	173783791	173783991	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019806, exon 6 of 6)	3' UTR (NM_019806, exon 6 of 6)	46320.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	5.34963308323504	5.10154816876803	5.71860811607373	5.76393057641157	4.99699785661437	5.1314293333977	4.67432704356878	5.12967398055255	-0.969901409540132	0.00406439177823134	0.0405635645517006
Merged-chr17-26584607-4	chr17	26584496	26584696	+	992.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	23084.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	5.2204038076068	4.92284817110203	5.05059775756113	5.61398865997437	5.13770986365245	5.57250930996583	5.16345452011352	5.55236039236774	0.207099700657287	0.543809740448075	0.794907181513579
Merged-chr2-38926732-4	chr2	38926618	38926818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010264)	promoter-TSS (NM_010264)	-257.0	NM_010264	14536.0	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	6.61981461730781	6.7657112018829	6.53769826630994	6.28675152881789	7.14834544127578	6.96354525093595	7.23606145676383	6.61625260052552	0.654863443791993	0.00504927477358719	0.0478686766869231
Merged-chr13-23581551-4	chr13	23581468	23581668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175654)	promoter-TSS (NM_175654)	-34.0	NM_175654	319156.0	Mm.260530	NM_175654	ENSMUSG00000061482	Hist1h4d	-	histone cluster 1, H4d	protein-coding	7.89413555178956	8.38808829508136	8.41562753901663	8.0882426134832	8.07623218361663	8.54704277782398	8.48291085374748	8.20718586351616	0.160312275703486	0.415152602004368	0.709504359241972
Merged-chr12-71003872-4	chr12	71003726	71003926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045055, intron 3 of 3)	B2_Mm1t|SINE|B2	11997.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	5.79815068491203	5.91191464754981	5.7758570547125	5.24493780303037	5.85108028854198	6.10355443111528	5.23516753420545	5.3906368820885	-0.00575464797658008	0.986239315317112	0.994919473694786
Merged-chr12-73968342-3	chr12	73968239	73968439	+	813.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178392, exon 3 of 10)	exon (NM_178392, exon 3 of 10)	3809.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	3.72316430827486	3.88818171982998	3.97057858865485	4.00549002909331	3.71736786182263	3.89563450074826	3.81257820285706	3.66639186836124	-0.399417190274581	0.375700306086448	0.678595291948235
Merged-chr4-120053273-4	chr4	120053254	120053454	+	991.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-107852.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	4.8468082834549	5.10359423735781	5.09402064568427	4.92153040920239	5.0098468612215	4.8178732739452	5.16081745101549	5.21232418941918	0.130864096417454	0.679254886837003	0.868329272937217
Merged-chr8-25275247-4	chr8	25275127	25275327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31043.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	5.85338941163186	6.46390318769984	5.78078932959355	5.52869481525589	6.18118378224145	6.20684306310845	5.72600357529387	5.58657142270408	0.00926413533587218	0.977096249951128	0.991846772373464
Merged-chr9-88405432-2	chr9	88405332	88405532	+	643.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359958, intron 8 of 28)	intron (NM_001359958, intron 8 of 28)	33519.0	NM_001359958	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	2.92378580202132	2.60099447767684	2.53292158979877	2.75610156347465	2.68804970186345	2.84999400379113	2.79611371113917	2.97751313381979	0.537277063605135	0.409897058812912	0.70525942551561
Merged-chr16-37685358-3	chr16	37685280	37685480	+	905.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31012.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	3.39737590931839	3.48177089132913	3.66977574729672	3.51804355597561	3.46746169157823	3.51214267427366	3.4440844559769	3.80634045306103	0.142443672097764	0.774328522570856	0.911799562721906
Merged-chr7-90475383-2	chr7	90475283	90475483	+	735.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026734, intron 1 of 4)	intron (NM_026734, intron 1 of 4)	612.0	NM_026734	68472.0	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	3.30889247753746	3.19746484167866	3.12446426413863	3.58249968123245	3.38870135401555	3.42125460677613	3.29713503199233	3.363700982084	0.127464129369107	0.817010117314175	0.929622615879435
Merged-chr9-106429447-4	chr9	106429352	106429552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324534)	promoter-TSS (NM_001324534)	41.0	NM_009082	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	6.94404539297392	7.21569776819135	6.98451868600356	6.33148951377849	7.2928210532939	7.39552538088685	7.09439682046272	7.34546447472033	0.536595308192121	0.02654490860699	0.154606010124944
Merged-chr15-98831541-4	chr15	98831457	98831657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016781)	promoter-TSS (NM_016781)	-49.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	7.89428427689152	8.198968988471	7.61017703725255	7.53165571686576	8.01089958626313	8.2369577494205	7.87197940072784	8.15818149405192	0.31379181843424	0.129228534348574	0.40006775601936
Merged-chr6-42392105-4	chr6	42391997	42392197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-8141.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	6.79484323071291	6.7115867546299	6.82414528676766	6.82551756910341	6.84360491819441	6.89959963580776	6.90827968018675	6.97571589418136	0.159394928401088	0.403126453059428	0.700638534342803
Merged-chr15-3228361-4	chr15	3228281	3228481	+	932.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42386.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	3.89381386917231	3.83290909305527	3.99175590925858	3.86548762515092	4.0747077390732	3.79317846451007	4.22541105904685	3.78697498209679	0.262536658338929	0.551262436393531	0.798837168776829
Merged-chr2-59435037-4	chr2	59434927	59435127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48345.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	5.57704878087673	6.04112274502531	5.84082093483572	6.29284286984745	5.75405419564884	5.91832729665752	5.76304677144617	5.86017401359461	-0.265215559547889	0.338420164057784	0.648017142470682
Merged-chr10-95780193-8	chr10	95780046	95780246	+	803.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160517.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	4.03233037949737	3.57817073105106	4.21568146117014	3.90536880445155	4.17926602345542	4.15770937247116	4.10918250171415	4.37241781690709	0.681327431529681	0.12081881850737	0.38487103973184
Merged-chr2-26933486-4	chr2	26933402	26933602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011512)	promoter-TSS (NM_011512)	9.0	NM_011512	20932.0	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	7.99514892840309	8.26268821465223	7.82207453539442	7.84778223110608	8.10170360881418	8.13940913353964	7.97168389810306	7.93557135037725	0.0626801320501015	0.724941200351063	0.890550799072391
Merged-chr17-34121185-5	chr17	34121162	34121362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204973, intron 1 of 12)	CpG-6274	485.0	NM_010238	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	6.36465135020211	6.64659603336388	6.54351120658171	6.22460160226801	6.84259572171935	7.01318471374499	6.6355580579584	6.76561569463532	0.542964250303853	0.0141847386316892	0.100844537661307
Merged-chr1-155413614-4	chr1	155413520	155413720	+	959.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 1 of 14)	intron (NM_011273, intron 1 of 14)	3824.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	5.08007640735991	5.09111842059153	4.79533645460902	5.22138511040096	5.2066259937639	4.71261080651744	4.81210601605792	5.04511784531187	-0.186534990975673	0.580449978575532	0.815718435955212
Merged-chr4-63668493-3	chr4	63668402	63668602	+	946.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34081.0	NR_151544	102632940.0	Mm.399154	NR_151544	ENSMUSG00000086817	Gm11482	-	predicted gene 11482	ncRNA	4.19350492065025	3.93862298817843	4.46871441832662	4.24117673352038	3.87376785245246	4.27539889328747	3.9376740217898	3.89772306973124	-0.580788983862629	0.184628526179345	0.48221017373939
Merged-chr3-83798015-4	chr3	83797916	83798116	+	951.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31695.0	NM_009144	20319.0	Mm.19155	NM_009144	ENSMUSG00000027996	Sfrp2	AI851596|Sdf5	secreted frizzled-related protein 2	protein-coding	5.10918879295928	4.90568049160357	4.94279513592304	5.11933824712156	4.53650694765907	5.21837897184721	5.14547438437742	4.93947303146043	-0.106041834028567	0.758948095520888	0.905411837624275
Merged-chr11-54758177-4	chr11	54758084	54758284	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 1 of 5)	MER57C2|LTR|ERV1	29519.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	4.71582988638049	4.77759667278138	4.93831066479796	4.62418701917451	4.80913390817648	5.1428780187314	4.8092388883866	4.96837867505705	0.357965110934009	0.281281016882343	0.593364397506619
Merged-chr4-130663792-4	chr4	130663780	130663980	+	882.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356566, intron 1 of 17)	CpG	523.0	NM_001356564	80912.0	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	4.00775793206589	4.28019416903905	3.64389077898623	3.90712837488912	3.93298407974174	3.70025365749148	3.63073319422178	4.00589098489707	-0.417302673462702	0.384308401984313	0.685942168681296
Merged-chr4-132215025-4	chr4	132214926	132215126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2770.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	5.98038678870734	5.8135222331874	5.82234527136577	6.11647689815065	5.52388695084925	5.87225363970154	5.76845043618585	6.26202223535811	-0.116162009035546	0.678674836367903	0.8681208945003
Merged-chr5-148552686-4	chr5	148552610	148552810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011908)	promoter-TSS (NM_011908)	78.0	NM_011908	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	7.52958284790123	7.79717234658707	7.68057581163583	7.52999121003053	7.76508680065727	8.23470769458315	7.69964083052975	7.28977034863538	0.19929260507954	0.372615595036099	0.676386604956396
Merged-chr5-105624402-4	chr5	105624307	105624507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75562.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	5.91361224794923	5.84185889901043	5.72733582393295	5.43095563158509	5.87342847037706	5.90268734239404	5.59384619816201	5.97399131856651	0.197631645675393	0.468567692732767	0.747803507343786
Merged-chr4-148152036-4	chr4	148151977	148152177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015797)	promoter-TSS (NM_015797)	-48.0	NM_001163706	50762.0	Mm.27445	NM_015797	ENSMUSG00000055401	Fbxo6	AA408845|FBG2|Fbs2|Fbx6b|Fbxo6b	F-box protein 6	protein-coding	8.05007570331801	8.14248819746595	8.18537377186393	8.11103008386337	8.2872890118731	8.43938846245632	8.54606061485447	8.00498897753606	0.269364183354669	0.122554949341869	0.38801435544902
Merged-chr1-16228775-4	chr1	16228656	16228856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025303)	TTS (NM_025303)	122874.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	7.23858705321541	6.99393466029907	7.2398378302298	7.28618664942014	7.32582558961033	7.18177582756516	7.29632362418525	6.96012984872524	0.00842879377498164	0.965430946364929	0.987769412779284
Merged-chr13-44722216-4	chr13	44722124	44722324	+	959.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8550.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	4.86494156849252	5.4390735526922	4.82733623693085	4.89633671369761	4.95920267902183	5.11330836954868	5.01754414335918	4.74388810399724	-0.133712033896216	0.699280607102632	0.87873985942593
Merged-chr3-107094235-1	chr3	107094135	107094335	+	608.5	f0_balb.idr	Intergenic	Intergenic	-7332.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	3.5654662635688	3.56677054978046	3.45500385284651	3.28527360739921	3.77569008268368	3.5702256682477	3.44213401634228	3.61595014171369	0.492211647012185	0.322161508792985	0.633631777683777
Merged-chr12-112619965-4	chr12	112619881	112620081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007421)	promoter-TSS (NM_007421)	-66.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	7.62696042137151	7.50659057752808	7.57791415831953	7.58715890463897	7.21078336654739	7.3901002170978	7.08159581747407	7.35849528948702	-0.418531600383703	0.018384978090643	0.121090437264169
Merged-chr5-109557340-6	chr5	109557160	109557360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310694, intron 2 of 7)	intron (NM_001310694, intron 2 of 7)	1733.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	7.50614874144692	7.64523043889732	7.46830463126389	7.36113006707096	8.02893368021971	8.15328221575242	7.9441001450586	7.88844715269335	0.671314024185231	8.85884359881099e-05	0.00183410014112789
Merged-chr3-95228266-4	chr3	95228127	95228327	+	791.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172395)	promoter-TSS (NM_172395)	-197.0	NM_172395	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	3.5896509022818	3.46683330680465	3.80190219461133	3.90617537850249	3.75529773892253	3.81870087624897	3.5187368554562	3.93794086949356	0.154046783884746	0.753641366657277	0.902798885097597
Merged-chr19-46863759-4	chr19	46863648	46863848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102471, intron 4 of 6)	intron (NM_001102471, intron 4 of 6)	98603.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	6.76960740212337	6.96920572173852	7.05233511659153	6.73632811860508	6.10851039889103	6.62077876308011	6.51220005798202	5.91850532737226	-0.828265407738801	0.000794101164278933	0.0111750349490332
Merged-chr9-40651602-7	chr9	40651500	40651700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34364.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	5.63731070451692	5.29990804278814	6.04662353255508	5.98147434879993	5.36236155247074	5.56330312589335	5.29623051129764	5.38226588472808	-0.648228111023292	0.0332600066069629	0.179203181261166
Merged-chr19-51227940-3	chr19	51227836	51228036	+	755.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-549290.0	NM_001290356	58178.0	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	3.41167253699533	3.6620388419458	3.27240003719943	3.83006021511605	4.1159558403416	3.65639445703646	4.09646177711713	3.85778999386053	1.07548734301916	0.0448804608989544	0.216476677260058
Merged-chr7-99380975-4	chr7	99380882	99381082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362166)	promoter-TSS (NM_001362166)	-536.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	6.85425806794825	7.21798133027752	6.86939497449988	7.07795277442624	6.95518745830185	6.97538407002665	7.01430048082512	7.03280720756661	-0.0397197565808091	0.839332692942397	0.938895262970456
Merged-chr11-100816316-4	chr11	100816217	100816417	+	729.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	6253.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	3.98998125148539	3.74547012144073	3.7321501066812	3.97567209193254	3.95893329496371	3.9622663066366	4.14593876176056	3.94053524436535	0.354805964272752	0.414905322371653	0.709388339004393
Merged-chr19-5877810-4	chr19	5877727	5877927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361973)	promoter-TSS (NM_001361973)	5.0	NM_001361974	107375.0	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	7.27391530604551	7.15543302130444	6.54762551687376	7.0441083112804	6.7323610577178	6.96438890318851	6.69340495166823	6.90694025459736	-0.292855616870022	0.196375308247411	0.49739576360827
Merged-chr16-91864287-4	chr16	91864211	91864411	+	871.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 26 of 28)	intron (NM_001110275, intron 26 of 28)	67319.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	3.79984647015641	4.17284913863761	4.09531325002698	4.09181945066392	3.56148616416571	3.6776642928064	4.11949493095497	4.09272799912363	-0.464204226206307	0.328360907012087	0.639840327802319
Merged-chr14-103550637-4	chr14	103550534	103550734	+	955.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022886, intron 8 of 30)	intron (NM_022886, intron 8 of 30)	37293.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	4.4389471314929	4.79035697617899	4.52859370452213	4.80038047275245	4.67925661557296	4.82340942422067	4.55010016819669	4.64850139010745	0.0278658905462664	0.937572958877936	0.977363579296412
Merged-chr1-37559530-1	chr1	37559430	37559630	+	589.0	f0_balb.idr	Intergenic	Intergenic	-18514.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	4.0235482452765	4.32750941001084	3.9288291345073	3.44416066266068	4.08526418254057	4.00135386516511	3.75631311402975	3.71229757053647	-0.174501895889149	0.732470274931567	0.893963778565797
Merged-chr8-25743030-3	chr8	25742943	25743143	+	965.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361595, intron 7 of 15)	B3A|SINE|B2	11237.0	NM_028102	72108.0	Mm.246875	NM_028102	ENSMUSG00000061313	Ddhd2	2010305K11Rik|SAMWD1|mKIAA0725	DDHD domain containing 2	protein-coding	3.64471378199941	3.73581201705013	3.53060337004663	3.97794836728797	3.64605933272223	3.86908649831222	3.57583934700263	3.79783245355297	-0.0773379896424023	0.873627072397811	0.952644984851839
Merged-chr2-92183848-4	chr2	92183776	92183976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346704)	promoter-TSS (NM_001346704)	-306.0	NM_138755	192285.0	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	5.62501460937515	5.54267314115333	5.70115366401224	5.45483742155397	5.85612729421167	5.72091057335311	5.40407095248072	5.51441075907368	0.122489365277282	0.656781553153885	0.856884619241167
Merged-chr5-32085760-4	chr5	32085670	32085870	+	919.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50702.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	4.64416513602347	4.37239600624135	4.72084190816192	4.86628498496626	4.57636940009239	4.65335758463024	4.54338246366892	4.78923827047772	-0.0755643652377819	0.834824597305814	0.937111320810386
Merged-chr5-88518317-4	chr5	88518214	88518414	+	761.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	9583.0	NM_152839	16069.0	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	3.52723328539739	3.44414248452109	3.57906407314468	3.56959788260318	3.51679229970455	3.34519093412706	3.40563397828596	3.47224248876177	-0.31067501833351	0.531724943527473	0.787573867058057
Merged-chr1-106317131-4	chr1	106317021	106317221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 3 of 16)	intron (NM_133821, intron 3 of 16)	145252.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	6.39409483073421	6.32319299100453	6.68050804039863	6.80760987616916	6.35851068772691	6.25133558316666	6.44805480085583	6.25957437951903	-0.363019738182523	0.120165063665083	0.383765666983124
Merged-chr1-23983284-4	chr1	23983188	23983388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	22352.0	NM_026503	68002.0	Mm.250424	NM_026503	ENSMUSG00000026154	Sdhaf4	1110058L19Rik|1700001E18Rik|C6orf57	succinate dehydrogenase complex assembly factor 4	protein-coding	6.43844277679394	6.85097428409176	6.54424784265507	6.81720240151694	6.92530795201449	6.61703924184435	6.76630703411972	6.50566280554062	0.050968505675625	0.821021837657458	0.931480092500087
Merged-chr9-88482647-4	chr9	88482552	88482752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019796)	promoter-TSS (NM_019796)	-255.0	NM_001284328	56403.0	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	8.7449875964896	8.81165886701922	8.86402745211969	8.8416119813015	8.82676531819987	9.04185923598659	9.05316343529176	8.9152935257622	0.177615333870902	0.216878831324038	0.523579512101943
Merged-chr14-30763142-4	chr14	30763037	30763237	+	924.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166531, intron 2 of 21)	MTD|LTR|ERVL-MaLR	47522.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	4.95638025309378	4.79462783717516	5.38603345153078	5.34616869828443	4.62519693907601	4.49546826699309	4.54088206601231	4.91932013829043	-1.00421267737132	0.0057362897795437	0.052589305798318
Merged-chr11-3504777-3	chr11	3504659	3504859	+	804.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172439)	promoter-TSS (NM_172439)	62.0	NM_172439	170835.0	Mm.24313	NM_172439	ENSMUSG00000034570	Inpp5j	Pib5pa|Pipp	inositol polyphosphate 5-phosphatase J	protein-coding	2.89570260985506	2.88179850892018	2.83887417348385	3.06843788655218	2.4186999040208	2.53222859414774	2.57356817252425	2.64892747303467	-2.15832453427651	0.00339869163175394	0.0352133146516177
Merged-chr17-48232704-4	chr17	48232607	48232807	+	966.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021406)	promoter-TSS (NM_021406)	-32.0	NM_001347399	58217.0	Mm.248352	NM_021406	ENSMUSG00000042265	Trem1	-	triggering receptor expressed on myeloid cells 1	protein-coding	5.18455595391756	5.11987008514	5.45016424120262	5.57048418934069	5.06782990580625	5.15109219731534	5.54780127681422	5.07991707230423	-0.243277327346579	0.445255026168246	0.731327476177533
Merged-chr1-165762595-2	chr1	165762495	165762695	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1163.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	3.49969011834676	3.27182283057997	3.94034377023797	3.50395116209977	3.59407681656245	3.67478143137898	3.54327995175291	3.76093471937559	0.231014308275451	0.652053156649296	0.854348672565858
Merged-chr9-121330196-4	chr9	121330070	121330270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	B4|SINE|B4	32668.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	5.62358252929623	5.47900314634209	6.18923628630593	5.95643794662492	5.48221513389921	5.25664136057474	5.59610771052077	5.6974132262241	-0.544880351898217	0.0687369999761911	0.280123149049886
Merged-chr16-10978569-3	chr16	10978441	10978641	+	741.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	14580.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	3.7086953862074	3.37486643104132	3.55694993376252	3.37908544821142	3.29162226476056	3.82941787549249	3.37215641662022	3.65826865183566	0.145295746101944	0.782013219312204	0.915221466378159
Merged-chr13-114834813-4	chr13	114834711	114834911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008396, exon 30 of 30)	3' UTR (NM_008396, exon 30 of 30)	16574.0	NM_001113374	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	5.8554889692136	6.07072732634242	6.30672138620844	6.39023745513254	5.74880835448108	5.82267175034854	5.98716822014109	6.17575176216569	-0.385003148867346	0.143109366044343	0.42129044069938
Merged-chr7-88264896-4	chr7	88264802	88265002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14_RN|LTR|ERV1	-13183.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	5.66352348350782	5.81039292250531	6.21169770963612	6.23227722266053	5.39887993217979	5.92082100175761	5.90449681090671	5.95252956803558	-0.33714009807256	0.246426218600607	0.557673692994975
Merged-chr18-80693198-2	chr18	80693098	80693298	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 2 of 9)	intron (NM_198429, intron 2 of 9)	14975.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	3.09020384065327	3.22903627264983	3.20700902448712	2.91826926555134	3.34729279157922	2.92815578176414	3.13833695864999	3.14846362111463	0.184513357317142	0.751935422285622	0.902329068825205
Merged-chr11-74828563-4	chr11	74828484	74828684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2340.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	5.85738376406836	6.06516441383823	5.8814834058835	5.9326225804318	6.03042358917624	5.62992376436662	5.8515638192715	5.67996180305113	-0.188572736882802	0.460611705060447	0.742687499720882
Merged-chr9-32509235-2	chr9	32509135	32509335	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	32217.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	4.91679824663691	5.18180690728456	4.79912695684627	5.44759168334133	4.98753816253877	5.01774023041328	4.81720506800018	5.50598274195717	-0.0433620140706564	0.904595691987644	0.964559678221358
Merged-chr4-129789738-4	chr4	129789649	129789849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30730.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	6.64951953122016	6.60306356225394	6.19046791721783	6.63497759322621	6.68329814428151	6.68558940065069	6.37319013770996	6.38323290278531	0.00576621296593024	0.980033162834279	0.992772119265666
Merged-chr15-95907066-4	chr15	95906973	95907173	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 3 of 19)	intron (NM_175344, intron 3 of 19)	-77001.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	5.22701216008894	5.23025010307913	5.16825427647535	4.84410730877452	4.84209982433537	4.95647741082579	4.79635010790005	5.28114281377913	-0.26038697312491	0.437075550227095	0.725451385050576
Merged-chr9-74938823-3	chr9	74938724	74938924	+	866.361084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14056.0	NM_001359816	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	3.22086370565176	2.99797122912324	3.28825498185273	3.263887224583	3.74724116840243	3.53115197540366	3.88514532292731	3.90162974780005	1.88696519952719	0.000403476337660569	0.00648578189664445
Merged-chr4-138066509-4	chr4	138066388	138066588	+	927.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256195, intron 4 of 34)	intron (NM_001256195, intron 4 of 34)	68663.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	5.03203303273661	5.00945504435495	4.8346522818471	4.94766911495207	4.7608948534467	4.49600112606302	4.44447809728701	4.75784151055588	-0.68028335810103	0.0476735846034298	0.225188007066662
Merged-chr9-66124880-4	chr9	66124779	66124979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019727)	promoter-TSS (NM_019727)	7.0	NM_019727	56440.0	Mm.271891	NM_019727	ENSMUSG00000032382	Snx1	-	sorting nexin 1	protein-coding	7.84534569101206	8.13252691989702	7.80102830757466	7.6709085226753	7.83869432012737	7.89848105490988	8.00145948171715	7.66570544338208	-0.0174513379343646	0.924777175841515	0.972223507044681
Merged-chr2-117390350-4	chr2	117390247	117390447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47470.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	6.31059156876663	6.38201082641903	6.17708634215155	5.51538995147845	6.53444781009779	6.83429310929969	6.40018834316978	5.85158574333392	0.484575497755798	0.121557914370312	0.386180352018051
Merged-chr4-145210808-4	chr4	145210749	145210949	+	909.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-15844.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	3.89320363374412	3.84617812051437	4.22853019880307	4.16785738385524	4.42197615288806	3.95907566490504	4.03085358542353	4.18312665178176	0.311018929307779	0.476897552598279	0.753208576524599
Merged-chr5-21131367-4	chr5	21131271	21131471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44908.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	8.20842085230866	8.26986203807017	8.10556697997739	8.37570774752473	8.0219384477627	8.02113845431976	8.21708738441502	8.13794300412339	-0.191429133611661	0.233251268592445	0.542869961976968
Merged-chr9-123683891-3	chr9	123683794	123683994	+	702.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5062.0	NM_139142	102680.0	Mm.440867	NM_139142	ENSMUSG00000036814	Slc6a20a	A730081N20Rik|AU022428|Xt3s1|Xtrp3s1	solute carrier family 6 (neurotransmitter transporter), member 20A	protein-coding	3.19875383648504	3.27604465050199	2.94516777116727	3.20828988076215	3.25816197039227	3.25007333855065	3.12913168299474	3.25383732405672	0.217742444255384	0.693274331553671	0.875265145633281
Merged-chr7-99151564-4	chr7	99151434	99151634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10390.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	6.11581761810485	6.25275803232812	5.85175319117691	6.04391901531837	6.24471738840345	6.07631288895377	6.0656126087623	5.60507205798253	-0.0732052759369914	0.78085055612947	0.914719096388196
Merged-chr6-95117778-4	chr6	95117693	95117893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102670)	promoter-TSS (NM_001102670)	-87.0	NM_001008785	243574.0	Mm.333275	NM_001008785	ENSMUSG00000030031	Kbtbd8	AU040152|SSEC-51|SSEC51|Takrp|mKIAA1842	kelch repeat and BTB (POZ) domain containing 8	protein-coding	9.01157009065649	9.13251985117104	9.26992387269716	9.47587224733842	9.35971734901847	9.42696818823449	9.55024085597383	9.44156988959077	0.253175388844259	0.111064326901994	0.368174726367222
Merged-chr9-111731975-3	chr9	111731874	111732074	+	763.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41626.0	NM_001324546	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	3.89633955999347	4.33889919895544	4.27395999050748	4.34282438210818	3.24815502346775	3.41146173430392	3.28226104932011	3.50091623817486	-2.96138944275114	1.82403242192421e-07	7.42750593593497e-06
Merged-chr1-162626090-1	chr1	162625990	162626190	+	641.0	f0_balb.idr	Intergenic	Intergenic	-13060.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	3.51709065096894	3.19065757016598	3.41831452736871	3.39087979696806	2.92720419050337	3.24193578933942	2.98600316591774	3.4162878611474	-0.872675623865232	0.136535047759063	0.411042630338623
Merged-chr10-128589757-4	chr10	128589651	128589851	+	893.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010153)	promoter-TSS (NM_010153)	-250.0	NM_010153	13867.0	Mm.373043	NM_010153	ENSMUSG00000018166	Erbb3	C76256|Erbb-3|Erbb3r|Her3	erb-b2 receptor tyrosine kinase 3	protein-coding	4.09686791879697	4.14626050407178	4.37022867993243	3.90717132026501	4.32440234581743	4.27348231855887	4.50234421255469	4.36739842165636	0.605961300857805	0.129581288260304	0.400584865019769
Merged-chr7-16057999-4	chr7	16057900	16058100	+	895.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13845.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	4.73971969957332	4.11312766184934	4.42331175213007	4.77846278968618	4.35241928884624	4.68402020000763	4.48962171318079	4.83820358747183	0.104678550207364	0.796621875597763	0.921291833609651
Merged-chr3-148202394-4	chr3	148202308	148202508	+	984.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	752227.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	6.62470995686528	7.01302200663097	6.56783490689562	6.29657704870565	5.64073417942473	6.17391424538004	6.13708980553147	5.37558802433286	-1.18412982242836	7.50204434456509e-05	0.00158972317475975
Merged-chr6-53460136-4	chr6	53460024	53460224	+	963.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-113250.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	3.90024226028056	4.61129223375778	4.7416087635833	4.47944648883154	4.37624521277181	4.02521375737122	4.43064469311824	4.48848700011509	-0.29251702293641	0.503460960203717	0.770381746164637
Merged-chr15-103388722-4	chr15	103388604	103388804	+	743.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21913.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	3.55294146283883	3.60645915496232	3.43922690067808	3.54114488067545	3.74219609799369	3.61204607884743	3.69235679446519	3.55150556091224	0.376389751031398	0.426351000162137	0.717819094082852
Merged-chr3-146656062-1	chr3	146655962	146656162	+	589.0	f0_balb.idr	Intergenic	Intergenic	-4745.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	3.14785779957745	3.19535857767272	2.87810393815169	3.19281483575473	3.11175140485267	3.25966558682663	3.45550856893968	3.37033623093417	0.695395998961173	0.221330732290334	0.529460601367625
Merged-chr4-135829198-4	chr4	135829039	135829239	+	967.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-26932.0	NM_001284196	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	5.1869352879458	4.77949506351457	5.0075201614611	5.03014416586018	4.63311048583148	5.21042749997011	4.47847690186772	4.49547730401417	-0.555042086368239	0.135291880852773	0.409488488634584
Merged-chr1-93579064-4	chr1	93578960	93579160	+	873.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145519, intron 12 of 26)	intron (NM_145519, intron 12 of 26)	56667.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	4.46234466556322	4.71581371938014	4.59059038259898	4.8846313673233	4.41124875208077	4.39998859750018	4.52869567050546	4.9684430611998	-0.197373241346217	0.606713966268987	0.829593003785543
Merged-chr11-23821850-4	chr11	23821749	23821949	+	956.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50879.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	6.41181575967103	6.24820174601374	6.60286225252775	6.26295938514517	6.03478922080775	5.71918966967627	5.65631970530528	5.17542274213613	-1.07775678596664	0.000214112980676801	0.00385343814199596
Merged-chr14-25855451-4	chr14	25855445	25855645	+	886.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	13390.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	3.02877699709828	3.26701011392364	3.2229757207034	3.46941967439753	3.51750303475981	3.39324791944363	3.2696587899188	3.22140413333714	0.320469965835685	0.568081668343221	0.808483326088737
Merged-chr13-42077179-4	chr13	42077085	42077285	+	977.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	ORR1D2|LTR|ERVL-MaLR	25164.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	4.88457073650687	5.28870029657852	4.96583563575172	4.95002784269493	5.93042072767519	4.89489376121486	5.47351005156842	5.73135541065048	0.969362489670018	0.00536879824503488	0.0500846252009617
Merged-chr14-8099945-4	chr14	8099847	8100047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	1736.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	7.2934255172022	7.44495771797585	7.46633278055481	7.43501793458655	7.46734039107312	7.66175163435406	7.41998022760371	7.59536006445991	0.162915668355827	0.349212592181593	0.65679883028286
Merged-chr9-110038079-4	chr9	110037994	110038194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205332, intron 8 of 17)	intron (NM_001205332, intron 8 of 17)	-13927.0	NM_001311163	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	5.61224439215653	5.32513525503004	5.85356424310224	6.18268364488207	5.25884470376361	5.28313142420094	5.86625657790109	5.68621233994168	-0.41813787857037	0.207583179386059	0.511583793557243
Merged-chr14-45665063-4	chr14	45665034	45665234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-6991.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	6.20740446456725	6.59709917920531	6.82200851509053	6.49819439327954	7.02593234067449	6.60103878092711	6.52681862398022	6.36413479701628	0.169976257348768	0.501234574881302	0.769126136091298
Merged-chr11-114745355-4	chr11	114745265	114745465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034878, intron 8 of 12)	intron (NM_001034878, intron 8 of 12)	17953.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	6.26058126583003	6.1787798003683	5.91521420110031	6.24934850733121	6.42364214146833	6.56256195389701	6.45333071554332	6.09586807813308	0.344583659878023	0.145754136749569	0.425521254242958
Merged-chr5-90365541-5	chr5	90365471	90365671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198010, intron 1 of 32)	CpG	614.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	4.66768617231032	4.92457556619432	5.32775849103926	4.51130892941365	4.91139434786102	4.96792134497366	4.91585084378046	5.10001615633197	0.186519381668327	0.608667576179936	0.830732271148022
Merged-chr5-92435277-4	chr5	92435175	92435375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183392)	promoter-TSS (NM_183392)	-76.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	8.95658713400271	9.04771499627882	9.10296652718112	8.92676592553441	8.89750998580982	9.20003565398169	9.11694270339879	8.89631250877158	0.0292971028563171	0.846955762292271	0.942078137957895
Merged-chr10-85351237-1	chr10	85351137	85351337	+	645.25	f0_c57.idr	Intergenic	L3|LINE|CR1	-35577.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	2.50367233526946	2.44581460727258	2.50388525411885	2.12866341748198	3.3039422667088	3.31913279848208	3.1811445475021	3.57037559537301	7.27169520440342	6.24359015254338e-13	6.93311237859415e-11
Merged-chr13-35740780-4	chr13	35740693	35740893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001123386)	promoter-TSS (NM_001123386)	-609.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	5.57655847646561	5.68828109060394	5.62798740462618	5.59029138114803	5.39141008944478	5.33119614394418	5.38555677649367	5.34862869428924	-0.443070167518901	0.0980264886767996	0.343090300315972
Merged-chr1-6215366-4	chr1	6215225	6215425	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009826, intron 1 of 23)	CpG	663.0	NM_009826	12421.0	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	4.65614783479276	4.81720748239678	4.95224964369059	4.83129592056933	4.65788330011086	4.98554323038564	4.79026608920094	4.80990951805259	-0.0244722601773052	0.941379871020473	0.978882689174403
Merged-chr4-107080389-4	chr4	107080304	107080504	+	811.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346552, intron 5 of 6)	intron (NM_001346552, intron 5 of 6)	13416.0	NM_175471	230582.0	Mm.44608	NM_175471	ENSMUSG00000028621	Cyb5rl	2810410C14Rik	cytochrome b5 reductase-like	protein-coding	3.36356543481517	3.35537914740221	3.42390355214791	3.47976927677454	3.40640169389844	3.20613071768484	3.76259880582195	3.94316503475064	0.647322932768858	0.231742930974077	0.541273042204025
Merged-chr18-23433441-2	chr18	23433339	23433539	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361217, intron 1 of 20)	Lx3_Mus|LINE|L1	18030.0	NM_001361217	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	2.81326998810662	2.90297553122825	2.98085600702023	2.60074773971658	2.47628521373675	2.72805667260663	2.6133046876244	2.47526636178991	-1.31219041269873	0.0631778936191928	0.266696038987941
Merged-chr8-106165567-4	chr8	106165478	106165678	+	925.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133792)	TTS (NM_133792)	-3276.0	NR_151676	330836.0	Mm.46749	NM_178798	ENSMUSG00000031904	Slc7a6	AI643885|LAT-2|LAT3|y+LAT-2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 6	protein-coding	4.63540017028064	5.15992346281566	4.45777026406421	4.75103401230443	4.9732259583291	4.58987105928059	5.00298702979397	4.63316382827046	0.0789469728698905	0.833278256804828	0.936237948428556
Merged-chr13-96011290-4	chr13	96011129	96011329	+	924.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029210, intron 4 of 12)	intron (NM_029210, intron 4 of 12)	-119307.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.62364536836228	4.23853047637728	4.40340689158936	4.31255821057494	3.61640582251827	3.81001168561565	4.3075309954647	4.11528148085845	-0.496861648693815	0.327070647528842	0.63867529942819
Merged-chr8-119446645-4	chr8	119446543	119446743	+	747.354187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054095)	promoter-TSS (NM_054095)	-76.0	NM_054095	117148.0	Mm.356184	NM_054095	ENSMUSG00000031837	Necab2	Efcbp2	N-terminal EF-hand calcium binding protein 2	protein-coding	3.90088797040522	3.9290400312623	3.34118839342009	3.71669265634592	3.810450398032	3.92736033566874	3.52275746054487	3.70303749661811	0.0228689228379645	0.963656313517684	0.987050203474864
Merged-chr17-86787992-2	chr17	86787881	86788081	+	746.75	f0_balb.idr|f1_balb.idr	intron (NM_010137, intron 1 of 15)	intron (NM_010137, intron 1 of 15)	34117.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	3.19252139354211	3.39535943119857	3.4568238890757	3.70152705126284	2.95361389385318	2.89241541910672	2.926568779839	2.93367514032343	-2.26527048637968	0.000442158757164151	0.00697526998585707
Merged-chr13-103915891-3	chr13	103915788	103915988	+	834.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	4698.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	3.64257193740493	3.26341528104336	3.64312941122392	3.47439453213001	3.19925102332927	3.55270902580224	3.42367765856154	3.25625044718456	-0.523336680433043	0.326663025845388	0.638182673235134
Merged-chr5-31240846-4	chr5	31240754	31240954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347326)	promoter-TSS (NM_001347326)	-29.0	NM_001347326	192292.0	Mm.292040	NM_147201	ENSMUSG00000029148	Nrbp1	B230344L17Rik|Nrbp	nuclear receptor binding protein 1	protein-coding	7.41370967075647	7.57529047924151	7.37461343374589	7.38715265898492	7.53118893325207	7.71497873877198	7.73779375148772	7.55978242649183	0.260540650324584	0.133368458572421	0.406663040937973
Merged-chr12-24786092-1	chr12	24785992	24786192	+	833.0	f0_balb.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-45507.0	NM_026037	67216.0	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	3.1230876413473	2.85802826087745	2.85036999891821	3.17197850785409	2.73099879508306	2.6061574569782	2.57441766321908	2.6522162197893	-1.8290557415459	0.00924461857724795	0.0746065893693123
Merged-chr9-59578451-3	chr9	59578365	59578565	+	931.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175235, exon 1 of 12)	exon (NM_175235, exon 1 of 12)	128.0	NM_175235	76183.0	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	4.4623404634931	3.95691093061788	4.01867399024351	4.08412885915236	4.25870042736422	4.70309171729449	4.05347234766186	4.11812822205819	0.405403396079828	0.353208526505808	0.660106772056838
Merged-chr13-8777875-3	chr13	8777771	8777971	+	933.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93173.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	3.36951118898859	3.29686715530738	3.57566013515163	3.78490318728472	3.10211887522218	3.42654220517719	3.04767284137934	3.12388983351813	-1.29638354261456	0.0255539884428065	0.150746506163643
Merged-chr16-57556403-4	chr16	57556285	57556485	+	721.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	7143.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	3.25816752704643	3.45076060537527	3.3793175406148	3.4194274460643	3.45399088156424	3.43300917360847	3.66898615588306	3.37756940137818	0.35603394881619	0.481305083268833	0.756510503784291
Merged-chr18-7626968-4	chr18	7626839	7627039	+	976.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161620)	promoter-TSS (NM_001161620)	-76.0	NM_001161620	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	5.70110565282532	4.9517659403232	5.70215847842634	4.95431112318481	8.15840835084585	7.59841001602523	8.2047372023341	7.90723612704529	3.8424301326466	6.77119000569791e-47	4.38151394014156e-43
Merged-chr3-89281258-6	chr3	89281188	89281388	+	763.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162425)	promoter-TSS (NM_001162425)	-337.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	4.00550279821176	3.67637996065427	3.46488501486821	3.5239802841067	3.52877773284709	3.45226248007689	3.45238346276281	3.96286432916604	-0.193184215158613	0.71226281585743	0.884804781356341
Merged-chr19-12556487-4	chr19	12556388	12556588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17022.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	5.50293965846061	5.96051781871729	5.28487185802905	5.75131084729096	5.51432520993001	5.70812114403786	5.44747116373004	5.91313116436179	-0.0111125973063461	0.97027213632155	0.989328178694086
Merged-chr9-25571072-3	chr9	25570989	25571189	+	705.083313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	89492.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	3.11525088173325	3.18974598137417	3.36056428759886	3.11754947889992	3.51763003121485	3.35653364107538	3.50280563399454	3.46565096404476	0.975402544556941	0.0588000222142225	0.255280681987566
Merged-chr12-8327007-4	chr12	8326892	8327092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021429, intron 4 of 6)	intron (NM_021429, intron 4 of 6)	13559.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	4.53545459364458	5.40796301675479	5.29045708661315	5.27078250024229	5.01550668389554	4.99073872399806	5.51884009204597	4.84875146453143	-0.0996248294530041	0.789934818730646	0.918708056312353
Merged-chr1-144250601-4	chr1	144250518	144250718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1514.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	6.03996046175892	5.7958041041461	6.38524485742764	6.53239300345586	6.04482977497304	6.17337538300737	5.87173247447413	6.47708748076395	-0.113083127592143	0.689848885705921	0.873623035418265
Merged-chr10-117807684-6	chr10	117807579	117807779	+	895.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-14974.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	3.60135930469164	3.88329400523803	4.17468257595682	3.91201587282754	3.73899957186021	3.83581558433097	3.64683455218746	3.8203519608596	-0.426481476294925	0.360684941793683	0.665936747041206
Merged-chr13-38659114-4	chr13	38659008	38659208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025380)	promoter-TSS (NM_025380)	-80.0	NM_025380	66143.0	Mm.490319	NM_025380	ENSMUSG00000001707	Eef1e1	1110003A02Rik	eukaryotic translation elongation factor 1 epsilon 1	protein-coding	8.2064429159339	8.14525785143905	7.56584916733249	8.0072584335383	8.24682514625671	8.20356067056933	8.43064992754465	8.06036999762106	0.303084121086431	0.118265181741093	0.380397458972873
Merged-chr11-21046421-4	chr11	21046335	21046535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44889.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	7.06650073639603	7.33732056327585	7.04283415447502	7.22397404932355	7.29944486561548	7.66858119003408	7.04433449194337	6.84838384346987	0.101425326968849	0.657696989533354	0.857477983748052
Merged-chr13-101659220-4	chr13	101659124	101659324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33406.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	5.38520080503646	5.83053823123819	5.41887053822804	5.44938445633842	6.02571969914835	6.07411912357572	6.27964913568387	5.91725592618054	0.884942594181153	0.000835914847767926	0.0116505938808054
Merged-chr7-109960481-4	chr7	109960386	109960586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021494)	promoter-TSS (NM_021494)	-16.0	NM_001311139	19347.0	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	6.64865453042173	6.79983980363148	6.69549668157667	6.52030363511162	6.7687359225013	6.97184080734072	6.78863531008068	6.49732756987465	0.147932668105441	0.488516570435429	0.761344727658502
Merged-chr1-189688204-4	chr1	189688115	189688315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081363)	promoter-TSS (NM_001081363)	-129.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	8.92409754075748	8.82268931154087	8.94409764944895	9.24172590547924	9.09521364187508	8.93036756767727	9.25558055367356	8.81833404834157	0.0482660653248498	0.780264767964665	0.914424162258906
Merged-chr8-126551140-4	chr8	126551019	126551219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42317.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	7.75347182094846	7.8831106862218	7.91949508415037	7.89024284939106	7.747277438805	8.04679304530514	7.49979699864115	7.88579744692383	-0.074743115080432	0.68104153729531	0.869054420637198
Merged-chr10-91171669-4	chr10	91171549	91171749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011605)	promoter-TSS (NM_011605)	-30.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	8.07875948567493	7.91807292344678	7.69455990053549	8.13058271161835	8.01274489796405	8.03475416421149	8.23569649058578	8.13083142943491	0.16885887245808	0.336277142106403	0.646333562921219
Merged-chr2-129593377-4	chr2	129593292	129593492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291021, exon 1 of 6)	5' UTR (NM_001291021, exon 1 of 6)	223.0	NM_001291022	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	7.08042130807642	7.56419776647559	6.86890338265063	6.5864622955154	6.91298207853375	7.0991944880291	6.49291133500428	6.64092285557887	-0.367579259301377	0.178134560908105	0.47385347507328
Merged-chr4-86748517-4	chr4	86748410	86748610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_184088)	promoter-TSS (NM_184088)	-45.0	NM_184088	329877.0	Mm.273718	NM_184088	ENSMUSG00000038024	Dennd4c	1700065A05Rik|AA420392	DENN/MADD domain containing 4C	protein-coding	8.07819328294072	8.0136395236291	8.23147267563675	8.10173519358086	8.05919004786463	8.17693801014038	8.26469670471168	7.96635048552552	0.0163073423596325	0.919883036735283	0.970406583631903
Merged-chr19-4497765-2	chr19	4497665	4497865	+	859.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_027237, intron 1 of 1)	intron (NM_027237, intron 1 of 1)	818.0	NM_027237	69861.0	Mm.282978	NM_027237	ENSMUSG00000042041	2010003K11Rik	-	RIKEN cDNA 2010003K11 gene	protein-coding	3.43043143132754	3.10237855966258	3.16278834064162	2.69741525527442	3.16596841129476	3.15001115014389	3.26320925848142	3.16109630992664	0.261062543294132	0.67250697881426	0.86523704441147
Merged-chr5-34336969-4	chr5	34336840	34337040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304270)	promoter-TSS (NM_001304270)	8.0	NM_001304270	19822.0	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	5.13843057948824	5.24882035391365	5.10346151258994	5.31615809458463	5.50866518276957	5.41751498764564	5.62669143707931	5.76376759281342	0.645133036402074	0.0229265944589408	0.140076572274072
Merged-chr11-115010419-4	chr11	115010250	115010450	+	805.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8470.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	2.99733642363362	3.14073754790195	3.11578873193979	2.66953354374197	3.12783382933052	2.9766194902676	3.1577839920844	2.86670864767422	0.219770376902186	0.724678818432708	0.890415158618739
Merged-chr13-81135725-4	chr13	81135647	81135847	+	852.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	171673.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	3.48883618849184	3.37908969560158	3.82293374729493	3.82570816529008	3.84949477078231	3.99239073191336	3.80665216082254	3.86870814254188	0.654208987769115	0.177163340711716	0.472420088731847
Merged-chr9-60832908-3	chr9	60832810	60833010	+	880.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357408, intron 1 of 19)	L1MB2|LINE|L1	38468.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	3.84175106166265	3.51669810838307	3.66022965374278	3.85608876542459	3.45869666000737	3.1564187570627	3.37618014723246	3.32469686785155	-1.32254863202561	0.0138058921433072	0.0990115462839758
Merged-chr2-181288127-4	chr2	181288044	181288244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198169)	promoter-TSS (NM_198169)	-178.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	7.75496461264171	7.78163846701394	7.23332864359385	7.54907022590329	8.0219803333654	8.06150603456259	7.85310780582275	7.89298140448621	0.473067600883324	0.0119443060845348	0.0896062144594331
Merged-chr13-112810515-3	chr13	112810413	112810613	+	860.966675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008903, intron 1 of 5)	MIR|SINE|MIR	9736.0	NM_008247	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	4.24299775699779	4.07102273097456	4.52279131906675	3.69206438785914	4.93416303567818	4.52464285951176	4.86099655976979	5.16358280265783	1.67279456070639	6.94019295247731e-05	0.00149018399446269
Merged-chr17-56031136-4	chr17	56031027	56031227	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	5510.0	NM_013664	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	5.54476658253805	5.50711586192662	6.03934339217436	6.17218618798501	4.93060954463498	4.77158922135988	5.12264599803456	5.24755981177335	-1.47511053218718	7.79245127920839e-06	0.000220452658824632
Merged-chr1-93236384-4	chr1	93236249	93236449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172463, intron 1 of 30)	CpG	452.0	NM_172463	208777.0	Mm.271897	NM_172463	ENSMUSG00000047793	Sned1	6720455I24Rik|AI197264|AI642697|D430044C15Rik|SST3|Snep	sushi, nidogen and EGF-like domains 1	protein-coding	4.72355068448586	4.89747542783519	4.94550556698212	4.92207987169802	4.86896002205063	4.43209473526973	5.16446300647485	4.94215260665221	0.0060098285664371	0.986289385415098	0.994955883224837
Merged-chr12-113015261-4	chr12	113015194	113015394	+	962.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	786.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	4.57924752549164	4.67626162670672	4.43953177641151	5.00021722144571	5.23222527344275	4.88194598532249	4.90447938984597	4.92505118640274	0.576193922907633	0.112963873509573	0.371444336514893
Merged-chr11-116618548-3	chr11	116618448	116618648	+	794.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	5704.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	3.91410170261226	3.44325795089807	3.5651241714168	3.94252252431903	3.67951544189447	3.68133721794893	3.60731591222718	3.67308955720611	-0.254571984611654	0.606314894500501	0.829368409964156
Merged-chr16-23272365-4	chr16	23272267	23272467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-18103.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	7.7415072708329	7.69803368027181	7.54166561514803	7.53890128932204	7.61249642298065	7.75470511983182	7.49543801577385	7.30778933135652	-0.100605687140936	0.582820726754936	0.816777579274426
Merged-chr1-92216380-4	chr1	92216273	92216473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-36032.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	7.50262460694615	7.48799583990926	7.92435963768467	7.51988940850488	7.728430175473	7.61359057692499	7.48555919000609	7.698659687456	0.0279528449037886	0.881842120274813	0.955498999559169
Merged-chr5-141081088-4	chr5	141080972	141081172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80476.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	6.74435160678131	6.46551985835153	6.18464645030693	6.23031918603953	6.46709094843904	6.72915142293694	6.79043437990924	6.4661024962263	0.293881817213166	0.217893903816256	0.524812112221229
Merged-chr19-32762650-4	chr19	32762528	32762728	+	884.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 1 of 8)	intron (NM_008960, intron 1 of 8)	5051.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	3.75999134715645	3.5193330607807	3.7605233058495	3.99141190469762	3.47321888469978	3.57873150519845	4.0716356589695	4.3491694462805	0.400003207597874	0.455590772130446	0.739054394131757
Merged-chr2-30965414-2	chr2	30965314	30965514	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144884, intron 2 of 4)	intron (NM_144884, intron 2 of 4)	2504.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	3.03653616471109	2.82040054844189	2.8342054887483	2.83295383957673	3.07423410674059	3.27092902818372	3.08629339744276	3.50304353360376	1.46089466282201	0.0127077780713054	0.0936072581328206
Merged-chr19-6877038-3	chr19	6876938	6877138	+	889.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19|LTR|ERVK	-18827.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	3.87028816498896	3.53694448534364	3.53282476478326	2.9026087190187	4.74885939653224	5.38149809609701	4.17393720642494	4.566817723019	3.43085911042723	5.48774837402466e-10	3.69548194432073e-08
Merged-chr16-55803751-3	chr16	55803653	55803853	+	883.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18385.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	3.25486488036507	3.29490944215533	3.03233201210151	3.17976174820253	2.90036231234791	3.01202208735639	2.82784787974819	2.90324030838105	-1.22260305060936	0.0426870126785432	0.209995084349024
Merged-chr15-100216315-4	chr15	100216199	100216399	+	828.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159361, exon 38 of 38)	3' UTR (NM_001159361, exon 38 of 38)	-11560.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	4.56374219817055	3.97916595451077	4.49010601876394	4.23358299655699	4.40241136825211	4.10340499939915	4.26330402366443	4.48714105582781	-0.00214467717469125	0.995861141478608	0.998543856884531
Merged-chr18-5821563-4	chr18	5821475	5821675	+	982.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	228928.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	4.77437361984419	5.23287960538808	5.2621817394545	5.04077822474697	5.73496295564148	5.37415895594255	5.6541308985204	5.31948383345531	0.809581318949084	0.00811638213059553	0.0678707664090295
Merged-chr18-23804986-2	chr18	23804920	23805120	+	876.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	1050.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	3.47730481945127	3.55785904550866	3.8417660802998	3.6722316953604	3.44696883876608	3.91423513949255	3.52310689409539	3.74590195084523	0.0586190760141486	0.906051057864131	0.965142818091782
Merged-chr4-142089050-4	chr4	142088941	142089141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_027137)	TTS (NR_027137)	-4737.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	6.33390178882547	6.13295216653871	6.38731723353545	6.45356985709983	6.19245868305727	6.25553490795159	6.28477638569995	6.0965064802871	-0.199007282171105	0.379666908279352	0.682157007046657
Merged-chr12-112672036-3	chr12	112671933	112672133	+	942.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331107, intron 1 of 13)	intron (NM_001331107, intron 1 of 13)	2243.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	3.54831862222307	3.37199872116367	3.90514511871793	3.36261364225445	3.82034042572654	3.66703526618524	4.01236949590952	3.65889884191461	0.748534198748327	0.134948480241329	0.408931339158154
Merged-chr16-23337487-4	chr16	23337397	23337597	+	878.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 5 of 7)	intron (NM_001252505, intron 5 of 7)	47027.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	4.60032127709707	4.91367524066948	4.22202748244978	3.97475768773615	4.65196667963048	4.77715382205928	4.96380794087079	5.01545994728526	0.821843858987612	0.0492680710481013	0.229668282104467
Merged-chr15-97361867-4	chr15	97361798	97361998	+	863.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 4 of 5)	intron (NM_172293, intron 4 of 5)	-114611.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	3.93961723260572	3.414416700247	3.8015473728035	3.76100550273727	3.78040627118849	3.76362625384925	3.63171678564952	3.69779636616948	-0.0577380132155416	0.90391650178394	0.96444226946395
Merged-chr7-46957983-1	chr7	46957883	46958083	+	720.666687	f0_balb.idr	intron (NM_001040695, intron 1 of 11)	intron (NM_001040695, intron 1 of 11)	535.0	NM_001040695	54122.0	Mm.1999	NM_016855	ENSMUSG00000043262	Uevld	8430408E05Rik|Attp	UEV and lactate/malate dehyrogenase domains	protein-coding	3.39523464316159	3.8069476955486	4.01661216359685	3.66943580934079	3.79756473288008	3.6978463516005	3.56742785463458	3.74106115567977	-0.0932302445274682	0.849503478748948	0.943128665229694
Merged-chr14-45664101-2	chr14	45664003	45664203	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5960.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	3.04846209860745	3.19300432985571	2.97549803427458	3.20159636738325	3.57410232693105	3.48155343077179	3.73409070805237	3.4721545386123	1.58810583171647	0.00396049166175455	0.0397439498085475
Merged-chr10-91182151-3	chr10	91182052	91182252	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Asp-GAY|tRNA|tRNA	-10533.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	5.75068833003546	5.71779493526322	5.53192936357428	5.73927902970516	6.2724650172131	5.65030551517477	6.23079070478406	5.84467446613071	0.55469686285944	0.0414771281913753	0.206267065432397
Merged-chr4-150009556-1	chr4	150009456	150009656	+	897.6666869999999	f0_balb.idr	promoter-TSS (NM_173371)	promoter-TSS (NM_173371)	-533.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	4.26558606800933	3.84770296279254	4.14186060094922	4.18864804091542	4.01425375088082	3.9136409070547	3.72136200899755	4.09496131009332	-0.469767697913894	0.286394757553812	0.598054698348964
Merged-chr7-120835093-4	chr7	120834993	120835193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7738.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	6.10401716237771	5.9869537597083	6.0833757411104	6.20797097211561	6.50801685936076	6.68171836429803	6.32539835456153	6.35344081291317	0.551896187831152	0.0154271266340885	0.106969282265842
Merged-chr2-148408237-4	chr2	148408099	148408299	+	984.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009378)	promoter-TSS (NM_009378)	-11.0	NM_009378	21824.0	Mm.24096	NM_009378	ENSMUSG00000074743	Thbd	AI385582|CD141|TM	thrombomodulin	protein-coding	5.50245462692946	4.98649102817418	6.0211601394726	6.15066932624023	5.02780548041829	5.29844482854783	5.5028778797883	5.55398938636792	-0.673902698165816	0.0659089455387898	0.273339907621367
Merged-chr14-70785531-4	chr14	70785434	70785634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11153.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	6.37250303083291	6.15177681696191	6.14639420502296	6.38035276538937	6.30830224027151	6.45871317257015	6.15565067064033	6.24158044076061	0.0287489696658975	0.899464116966582	0.962569456167014
Merged-chr18-84809165-4	chr18	84809072	84809272	+	874.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42166.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	4.80352277924027	4.27791415180971	4.2775968762429	4.43400764286916	4.6590332715671	4.50401966690741	4.74753148717277	4.66106609982908	0.411090624297865	0.269235134054078	0.580776664752408
Merged-chr8-117079903-4	chr8	117079813	117080013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 3 of 42)	intron (NM_029686, intron 3 of 42)	2536.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	5.63712878341221	5.68610510088678	5.55991239065149	5.55935839513235	5.60466695179331	5.53284535447256	5.60964616945848	5.38364516469059	-0.116917399631611	0.657949928529207	0.85760727297796
Merged-chr11-29247444-4	chr11	29247370	29247570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025740)	promoter-TSS (NM_025740)	-198.0	NM_025740	216618.0	Mm.128663	NM_025740	ENSMUSG00000020462	Cfap36	2300003H10|4931428D14Rik|Ccdc104	cilia and flagella associated protein 36	protein-coding	8.3081880232665	8.34714021266914	8.03511459177063	8.31655467118644	8.40713990092456	8.50950590951328	8.66881026042479	8.30409470985522	0.27512916188126	0.0998139801250486	0.346585652535286
Merged-chr11-43729102-4	chr11	43728984	43729184	+	916.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133795)	TTS (NM_133795)	18889.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	5.02506239329829	4.91062174034924	5.17782320696203	5.46821257374136	4.5833421353993	4.78907775815935	4.49748827709908	4.65057300601818	-1.11775550907538	0.00144992510482116	0.018150583720729
Merged-chr3-59186572-3	chr3	59186493	59186693	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302203, intron 1 of 2)	intron (NM_001302203, intron 1 of 2)	8511.0	NM_001302203	84111.0	Mm.60267	NM_032399	ENSMUSG00000051431	Gpr87	-	G protein-coupled receptor 87	protein-coding	3.32397420846955	3.21643373440033	3.73496898865801	3.54633770707632	3.5393704292202	3.43740878830052	3.25161217496086	3.43822580732282	-0.162772930020775	0.761267734434442	0.906512173824769
Merged-chr15-58822895-2	chr15	58822795	58822995	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175212, exon 1 of 7)	exon (NM_175212, exon 1 of 7)	532.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	3.71503251092986	4.03076979331147	4.32849029041348	3.73621986300752	4.02314386491177	4.00722896197597	4.0172831030423	4.12337436888444	0.207441195802874	0.646333740841915	0.851295585787822
Merged-chr13-112671880-4	chr13	112671784	112671984	+	962.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 2 of 14)	Kanga1|DNA|TcMar-Tc2	11118.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	5.09130289018959	4.82711313174788	5.3703005893444	5.37088017546362	5.7848019432175	5.74881377558811	6.22429265885099	5.89659436918715	1.23287493458752	5.27143887130507e-05	0.0011858904785734
Merged-chr2-83705919-3	chr2	83705813	83706013	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-18484.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	4.15192076293491	4.06091118874448	4.6706295064566	4.48980307132938	3.68141007939026	3.96758087468305	3.93890120558382	3.89863338151471	-1.33407139648504	0.00321646659244516	0.0337030583812239
Merged-chr13-76759345-2	chr13	76759251	76759451	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030174, intron 7 of 20)	intron (NM_030174, intron 7 of 20)	374390.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	2.77971466789899	2.71313357894828	2.85525046880954	2.92777020185344	3.27552391482662	3.51096982491558	3.51410535784845	3.11968305305296	2.11804125918671	0.000844053844581952	0.011747921183783
Merged-chr1-138152959-2	chr1	138152859	138153059	+	849.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	22167.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	3.51566663595406	3.70930282798822	3.51615277348465	3.64729274600727	3.45002621323021	3.39763720576913	3.27484424337068	3.21980199452481	-0.89695323794969	0.0842249127458831	0.315711467920334
Merged-chr2-91002297-3	chr2	91002202	91002402	+	913.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198683, intron 4 of 13)	intron (NM_198683, intron 4 of 13)	-33325.0	NM_009023	19400.0	Mm.1272	NM_009023	ENSMUSG00000002104	Rapsn	43kDa|Nraps|Raps|rapsyn	receptor-associated protein of the synapse	protein-coding	4.23411863938545	4.05300907341681	4.31468171744429	4.36681096070716	3.67526541940472	4.18319535271559	3.53246337331136	3.90531316570375	-1.1212288563897	0.0166477288560505	0.112950976288706
Merged-chr14-61599537-4	chr14	61599422	61599622	+	982.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023233)	promoter-TSS (NM_023233)	10.0	NM_023233	66597.0	Mm.491258	NM_023233	ENSMUSG00000035235	Trim13	3110001L12Rik|CAR|LEU5|RNF77|Rfp2	tripartite motif-containing 13	protein-coding	4.94006148213795	5.84238095336641	5.31820123855362	5.34757039822098	5.20516985558944	5.08126102701791	5.32084363071638	5.25369834810057	-0.339146725732195	0.305025149708015	0.617502421247634
Merged-chr6-91705756-4	chr6	91705655	91705855	+	993.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	21688.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	5.70527784589746	7.10040822299691	5.86605435697429	5.08854804170026	6.51868664659384	6.70944845830547	6.04223364962349	5.6144524617259	0.159011095148085	0.821705506234982	0.931839131812928
Merged-chr13-76579598-4	chr13	76579494	76579694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	194633.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	5.59329788206146	5.55415753861964	5.70381074478025	6.24735784047417	6.05291188178662	5.65411061057386	6.12947817664707	5.87122130683808	0.179485817938285	0.550716781120762	0.798673593705145
Merged-chr19-12571103-3	chr19	12570992	12571192	+	723.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2418.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	2.85713872228138	2.70568288642904	2.77371470889149	2.50628215390104	4.02704285287955	3.5762199432796	3.76239580704323	3.50211199058384	4.67459445619244	2.7776440917815e-11	2.32972078460996e-09
Merged-chr5-8672075-4	chr5	8671995	8672195	+	883.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011076, intron 5 of 29)	intron (NM_011076, intron 5 of 29)	-49143.0	NM_198620	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	4.64896790537699	4.37797666165896	4.40652098415747	4.92416264288637	4.68106779051204	4.39310746422774	4.29557318377325	4.44762168516668	-0.34581429698531	0.383910194761607	0.685555904565125
Merged-chr11-120491839-4	chr11	120491700	120491900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013770)	promoter-TSS (NM_013770)	-37.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	5.9157127348972	5.99080743802459	5.84617640429254	5.63423155262735	6.17725737899974	6.30083699455184	6.03644887832378	5.7414688305555	0.382226929090607	0.142442893421967	0.420023311275621
Merged-chr19-53600860-3	chr19	53600780	53600980	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007790, intron 1 of 28)	CpG	484.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	4.62218867092037	4.42581303507851	4.70136625551987	4.521088343904	4.79608978186167	4.62730784510675	4.91852502948641	4.80738476529829	0.488549520516944	0.152253529602336	0.436220300550268
Merged-chr14-71218807-3	chr14	71218704	71218904	+	726.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	-32469.0	NR_046075	100043132.0	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	4.26997528479652	4.36902056279626	3.80043441836598	3.53172150076269	2.83747711499175	3.01744323800548	2.9744647798054	3.14122672425515	-4.92545220414356	2.86927103327004e-07	1.1178535461255e-05
Merged-chr19-46356928-4	chr19	46356817	46357017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029186)	promoter-TSS (NM_029186)	37.0	NM_029186	75146.0	Mm.159290	NM_029186	ENSMUSG00000025227	Mfsd13a	4930449A08Rik|4930538D17Rik|Tmem180	major facilitator superfamily domain containing 13a	protein-coding	5.85637797756078	6.04395601421212	5.83412340353496	5.20353455214141	5.99154433183915	6.28108583119283	5.9159143764931	5.31694662636578	0.256722933653548	0.441403199891544	0.728497457917831
Merged-chr13-97235194-3	chr13	97235085	97235285	+	926.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5920.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	3.70153737282382	3.82987595431918	3.99453854212571	3.88518688934045	4.07660453595914	3.50988768295937	3.79153008907782	3.64419170683602	-0.204269733023848	0.673040885054668	0.865589526337487
Merged-chr14-20825102-4	chr14	20825003	20825203	+	926.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-11559.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	4.73705126907801	4.92865542917592	4.40090763248294	4.35680670081814	4.96856510954041	4.83475031311603	4.51712561223793	4.65842678122874	0.304997922712281	0.421706354263902	0.714131161968168
Merged-chr8-95715882-4	chr8	95715805	95716005	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001035123)	promoter-TSS (NM_001035123)	-8.0	NM_001035123	66083.0	Mm.261321	NM_001035123	ENSMUSG00000031671	Setd6	0610039J04Rik|3110004G14Rik|AI413388|C76402	SET domain containing 6	protein-coding	5.38714766841635	4.78930711916633	5.21357354388523	5.3983495672864	5.18210413724064	4.90928668935221	5.48886480396964	5.20997490217065	-0.0204661948612794	0.951098347083059	0.982556219406068
Merged-chr18-39460987-4	chr18	39460876	39461076	+	890.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	26269.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.36607272201801	4.00928383348551	4.57652569165735	4.23943644620618	4.37166817297402	4.29984487801932	4.9460325000125	4.84990408733121	0.761987250013254	0.0660102069998786	0.273584518693628
Merged-chr4-137357733-4	chr4	137357616	137357816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243769)	promoter-TSS (NM_001243769)	43.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	7.54359965607093	7.86199500413878	7.54487725891612	7.46990418162249	7.68717224687413	7.88522004284269	7.80069422377045	7.57589565011214	0.169838270639179	0.356379576452643	0.662848627231153
Merged-chr1-171843109-4	chr1	171842954	171843154	+	978.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 2 of 8)	L1_Mur3|LINE|L1	3357.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	4.87099839101746	5.04132599977017	4.75318477415314	4.78698559959009	5.24689350908725	5.22034176170985	4.95636293341329	5.07700533895669	0.52688318563119	0.0936748254146575	0.334806949444635
Merged-chr7-127008897-4	chr7	127008801	127009001	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080638, intron 1 of 14)	intron (NM_080638, intron 1 of 14)	5693.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	5.83335322619043	6.12890224863803	5.71159008052759	5.8731179481568	5.54897675898634	6.20230891264084	5.73285017908021	5.41999462556185	-0.235767435811367	0.419736315147293	0.712781243418825
Merged-chr17-73263263-4	chr17	73263156	73263356	+	939.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136040.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	4.23342568217649	3.93757570008981	4.00384011455375	4.35746010518286	4.23827102521635	3.96443751514642	3.71108794167829	4.3515777719263	-0.149822532797515	0.743833397808322	0.899089697091031
Merged-chr17-24171316-4	chr17	24171201	24171401	+	956.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1623.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	4.3958771483311	4.29017378423991	4.3523933592392	4.19863956978962	4.79452164605895	4.48140265266438	4.49951925111919	4.43643206283164	0.625665016629787	0.0919348980329962	0.331623169614429
Merged-chr19-17361400-4	chr19	17361311	17361511	+	885.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	MTD|LTR|ERVL-MaLR	-4744.0	NM_173442	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	4.81917720578218	4.75026150217365	4.81998867792492	5.12203989381156	4.26590918684212	4.40578263842353	4.44886893824453	4.42047609119224	-1.15224296343527	0.00156918719724256	0.0193810819907216
Merged-chr1-88247044-4	chr1	88246971	88247171	+	905.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 24 of 41)	intron (NM_001281466, intron 24 of 41)	20051.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	4.38189749903135	3.95310637011546	4.53310821116568	4.39941519511109	3.69803329633252	4.24377606114178	3.94478693740743	4.45711535799986	-0.552147825024586	0.236081465844968	0.546101444075659
Merged-chr16-91406277-4	chr16	91406164	91406364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008349)	promoter-TSS (NM_008349)	29.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	6.52138790201423	6.99609957525362	7.16597446643792	6.62575765754735	6.96079379868842	7.01410685365783	7.26140742419612	6.58733346363172	0.181487700238189	0.460733735792949	0.742730753154873
Merged-chr4-149841112-4	chr4	149841013	149841213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66846.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	5.48638065259477	5.66997215652803	5.54248678701398	5.15345333389372	5.77865024616873	5.54563928870312	5.54110487227541	5.53858818242937	0.263714190992438	0.360890732625559	0.666130694735743
Merged-chr15-57988045-4	chr15	57987941	57988141	+	852.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173862, intron 1 of 3)	intron (NM_173862, intron 1 of 3)	2138.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	5.06881029170907	5.2925134910751	4.36191766379059	4.3398741185406	4.76304304233819	5.08162972160254	4.77828396072631	4.63969824146036	-0.0151917082882714	0.971214767774352	0.989661202321986
Merged-chr11-3179104-3	chr11	3179005	3179205	+	966.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 5 of 32)	intron (NM_030207, intron 5 of 32)	14358.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	3.96422477550218	3.39125947503104	4.19437906198113	4.04703376143904	3.19729626061042	3.37212164055403	3.31427232072693	3.51444932966583	-1.93316274005678	0.000655324549577704	0.00957416792167311
Merged-chr16-90386367-4	chr16	90386311	90386511	+	922.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015755)	promoter-TSS (NM_015755)	14.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	3.6013444581052	3.86185308806686	3.88159304269651	4.16136653070292	3.92371850919472	3.95012282198965	4.05046130015887	3.87936222172999	0.112328558290858	0.807722818623228	0.92582798360164
Merged-chr17-78201443-4	chr17	78201293	78201493	+	932.1845089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 1 of 16)	CpG	1145.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	4.47904580940603	4.33373019457601	4.99255411323391	4.71278844156062	4.37678191882473	4.74226007470805	4.50341518551361	5.07601648026208	0.0930714756131843	0.817022101250247	0.929622615879435
Merged-chr2-75830535-4	chr2	75830430	75830630	+	835.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1647.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	3.71709579482621	4.17857728927578	3.65874951110676	4.15599820959489	3.89739214570969	4.23671883592266	3.52129265879043	3.92746065596482	-0.110854338846758	0.826497896909546	0.933457528269434
Merged-chr2-91444670-4	chr2	91444571	91444771	+	971.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311144)	promoter-TSS (NM_001311144)	43.0	NM_001311144	228356.0	Mm.386861	NM_175123	ENSMUSG00000040591	1110051M20Rik	AI586322	RIKEN cDNA 1110051M20 gene	protein-coding	4.92343643255394	5.37114212854612	4.68876276483264	4.66119787660086	5.38925423721723	4.90910550059782	5.00294847421783	4.68576101843498	0.181898578715159	0.63286692449607	0.844237692917759
Merged-chr10-60369604-4	chr10	60369503	60369703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159572, exon 7 of 7)	3' UTR (NM_001159572, exon 7 of 7)	22752.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	5.31273093199077	5.09706804288336	5.05152456495181	5.49989998482861	5.13835293540843	5.3958200719365	5.39958384995737	5.3391916140463	0.0786706233589802	0.797684474646509	0.921862017583033
Merged-chr1-48595868-3	chr1	48595759	48595959	+	908.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-648757.0	NR_151585	442837.0	Mm.337149	NM_001002792	ENSMUSG00000051616	C230029F24Rik	-	RIKEN cDNA C230029F24 gene	ncRNA	4.1265489694659	3.87611857158645	3.89657847952938	4.33981020707587	3.80610033828258	3.85461728658029	3.97664192434842	3.61403529829538	-0.748931510533554	0.106793766365597	0.360348218742401
Merged-chr9-100528623-3	chr9	100528505	100528705	+	573.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 1 of 3)	RMER6A|LTR|ERVK	17529.0	NM_010878	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	3.18372457434968	3.40363928499252	2.98750186923026	3.07591652917844	3.509160853113	3.35603375046272	3.17285356713684	3.2987991149474	0.642843642678604	0.24716354071164	0.558168726560377
Merged-chr2-35507335-4	chr2	35507228	35507428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-45879.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	6.18782243366127	5.63868598994826	6.26175437801449	6.32415402974745	6.02618191477208	5.81188001052995	6.09993145702697	5.79182130523689	-0.301882169329701	0.267535672349208	0.579217131190323
Merged-chr9-124143847-4	chr9	124143775	124143975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22332.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	5.92635123032324	6.15946885329794	5.75355077261121	5.9194947601954	6.22341252239989	6.19227141477459	6.00760400813771	6.15553574213494	0.312283571701686	0.193378662469949	0.493581231970041
Merged-chr9-106356671-4	chr9	106356567	106356767	+	977.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-11965.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	5.02372470969512	4.96331528705383	4.86458612380703	5.35628693959467	5.7767872474523	5.2040155379706	5.43918006767116	5.80976342198183	0.88832418446338	0.00702372962415638	0.0610119317410517
Merged-chr4-53203818-4	chr4	53203708	53203908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42388.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	5.22200471161845	5.20667864741079	5.70521239150069	5.55613620448108	5.44172912143902	5.11221220844914	5.13090004782795	5.42917758912574	-0.266129803812507	0.388490093115548	0.688981838974675
Merged-chr10-16589611-4	chr10	16589497	16589697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	506185.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	6.3604359375405	6.27720305033898	6.4641564384261	6.65225714554255	6.34521955028737	6.21635865686645	6.21788274348436	6.2058305810552	-0.309901420151316	0.173345498844722	0.467381192003767
Merged-chr8-41283839-4	chr8	41283744	41283944	+	773.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 16 of 37)	intron (NM_023662, intron 16 of 37)	44085.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	3.70532710185588	3.47215209205457	3.29155986061202	3.78995888423934	3.96295881658566	3.65990933801676	3.7869307077467	3.59822281944514	0.52639631295872	0.303912868916646	0.616618610587138
Merged-chr19-29487549-5	chr19	29487433	29487633	+	943.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34454.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	3.25531800108598	3.14512704307383	3.19667916446868	3.42874990040532	3.31098136152912	3.42469506916394	3.35269698219595	3.00057785059525	0.0435737052564359	0.937957052860323	0.977460307804652
Merged-chr2-23172486-4	chr2	23172380	23172580	+	862.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013771, intron 5 of 18)	ID_B1|SINE|B4	15975.0	NM_013771	27377.0	Mm.23335	NM_013771	ENSMUSG00000026775	Yme1l1	FtsH1|Ftsh	YME1-like 1 (S. cerevisiae)	protein-coding	4.24289760501627	3.74053594205395	4.09855823496418	4.5162175213497	4.21630668857637	4.2763532642997	4.02969622473215	4.90106461817203	0.495915720370269	0.308743539978456	0.621101988838968
Merged-chr17-71311925-3	chr17	71311797	71311997	+	896.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357336)	promoter-TSS (NM_001357336)	-341.0	NM_001357336	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	3.62082640841403	3.75012444298163	3.51836553350653	3.4648655998667	3.1858413093687	3.39795456867467	3.14038125688928	3.66762173699973	-0.78535049583336	0.150396497283967	0.433033574599801
Merged-chr6-83317196-4	chr6	83317101	83317301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008638, intron 1 of 7)	intron (NM_008638, intron 1 of 7)	403.0	NM_008638	17768.0	Mm.443	NM_008638	ENSMUSG00000005667	Mthfd2	AW558851|NMDMC	methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	protein-coding	5.49483748773785	5.6093727030447	5.31040417953992	5.44458060326699	5.76962553843264	5.88078110460985	5.7937192004326	5.62809450106591	0.50560940097849	0.053658573477099	0.241777780687879
Merged-chr18-82840567-4	chr18	82840498	82840698	+	929.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15299.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	4.42393917776924	4.50902904637541	4.46575205241487	4.38477068202135	4.45178599007174	4.42018932550026	4.40458572290654	4.1941816592521	-0.157322695140062	0.671754770994553	0.864905117611895
Merged-chr10-30718313-4	chr10	30718225	30718425	+	902.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 3 of 14)	intron (NM_001358842, intron 3 of 14)	-62458.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	4.25162427169023	4.04371571634728	4.5765573968696	4.53936973888541	4.26555515686247	4.12190141986487	4.27885022380559	4.64171091184966	-0.0860057708343277	0.837296371239818	0.938228460259819
Merged-chr7-144553794-4	chr7	144553700	144553900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033319)	promoter-TSS (NM_001033319)	-71.0	NM_001195086	233977.0	Mm.490347	NM_001033319	ENSMUSG00000037519	Ppfia1	C030014K08Rik|C87158|LIP.1|LIP1	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1	protein-coding	7.98370488472965	7.83941594288964	7.48932690117945	7.78230479011776	7.95231221252265	8.00544876023793	8.03079554567972	7.90364726764406	0.242055436602457	0.166647838336008	0.457960964592688
Merged-chr4-102499112-4	chr4	102499012	102499212	+	891.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177983, intron 4 of 5)	intron (NM_001177983, intron 4 of 5)	-70948.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.18350641941826	4.43495248218201	4.59768495722313	4.46575082415638	4.88044271222142	4.56041718841747	4.53665946108079	4.84344879237061	0.635499422670169	0.0831547734982938	0.313348706705095
Merged-chr7-89269889-4	chr7	89269781	89269981	+	947.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 4 of 14)	intron (NM_001360746, intron 4 of 14)	68906.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	5.07950310691653	5.02058586600474	5.31874492691877	5.40696483839141	5.00992846059622	4.88109907548248	4.84368014469307	4.90147590407507	-0.602912436944904	0.0588186522316234	0.255330416978394
Merged-chr16-52182223-4	chr16	52182118	52182318	+	956.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 13 of 17)	intron (NM_001033238, intron 13 of 17)	150669.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	4.72582559492694	4.3016344494281	4.19895282522735	4.50113263652471	5.06182144289361	4.66438126716118	4.7391281358415	4.52913357392224	0.703381029476354	0.065506422543612	0.272466432823429
Merged-chr11-20930821-4	chr11	20930730	20930930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99722.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	6.88804674725452	6.60136959133717	6.62155225061353	6.84199429427211	6.67935166131594	6.79786496530197	6.47329976564763	6.467007821032	-0.195324443471143	0.362295448040905	0.667507770457992
Merged-chr3-87566306-4	chr3	87566197	87566397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40719.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	6.22950824536809	6.25055220921682	6.6147743840204	6.44582165812272	7.20718481831449	7.54348339183058	7.48392853546094	7.12134376318075	1.32539284758077	8.86741675643077e-10	5.73273258225237e-08
Merged-chr2-166076120-4	chr2	166076053	166076253	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 18 of 20)	intron (NM_001252579, intron 18 of 20)	79132.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	3.23358515828432	3.65236997425016	3.16951488562031	2.90030073236999	3.03799775034991	3.41233583037058	3.3964710665185	3.74554840951007	0.526957877951726	0.390487262353217	0.69058015678842
Merged-chr10-20347753-4	chr10	20347653	20347853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027930)	promoter-TSS (NM_027930)	-66.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	6.45154482293138	6.25594430242766	6.48633993489135	6.38475704341904	6.54729522240381	6.38627164596735	6.65139590078235	6.48170687069551	0.190052500914854	0.372940388586508	0.676646629430783
Merged-chr2-101905912-4	chr2	101905825	101906025	+	649.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19663.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	3.85610989188987	3.43245186652576	3.17667281025967	3.58934749157777	3.70268583041796	3.55970146399475	3.83910943873922	3.66478058603958	0.491399661529472	0.346589158498115	0.654772665359167
Merged-chr2-130962090-2	chr2	130961980	130962180	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009730, intron 10 of 28)	intron (NM_009730, intron 10 of 28)	55585.0	NM_009730	11990.0	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	3.18858894601797	3.27996374702903	3.4109202090063	3.23348634156805	3.27498219986655	3.237065625018	3.05269038822481	3.35703231831856	-0.15356583876029	0.776723187357992	0.913014097434423
Merged-chr5-99250023-4	chr5	99249934	99250134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	2893.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.54186800246808	6.05286928133263	6.6252408337048	6.47947073814653	6.22137522283167	6.09585886129001	6.72561124401746	6.45302498039892	0.222809018905226	0.471858328976711	0.75015310499252
Merged-chr2-167895223-4	chr2	167895088	167895288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-37139.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	5.03612166877259	5.37727297014338	5.26387772670818	5.03747613047998	5.30165923097756	5.34494530559015	4.97709897748358	5.0685281719581	0.0116951245172863	0.969989429176581	0.98916754925263
Merged-chr4-43047420-4	chr4	43047311	43047511	+	976.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1191.0	NM_172691	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	5.06439097264136	5.13917657482017	4.47934592907457	4.71457751057436	5.03484386006342	4.92214771434475	4.9434145825025	4.92988655488275	0.180899142891221	0.601943953849	0.827350609957033
Merged-chr2-34360199-4	chr2	34360134	34360334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290576, intron 2 of 7)	intron (NM_001290576, intron 2 of 7)	11811.0	NM_001290576	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	6.06041223844601	5.38331276625564	5.53969127201827	5.84382593774581	5.84568935015716	5.47191407858886	5.56653683423807	5.50740846201181	-0.199370152526451	0.501268722292299	0.769144180751343
Merged-chr14-25461962-4	chr14	25461875	25462075	+	958.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	2790.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	5.84099407270243	6.19522998020476	6.09952657062386	5.66509900490671	5.55410544573856	5.18762645625774	5.37163939532727	4.91156817969917	-1.13443593390028	0.000333753248798976	0.00553758100145974
Merged-chr7-118116222-4	chr7	118116117	118116317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170669)	promoter-TSS (NM_170669)	-70.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	7.05789359674959	7.32436235706265	7.08445154219127	6.82514319674107	7.76344467031105	7.66539031679074	7.42382577261314	7.60427060048819	0.735871320116293	0.000210867112148661	0.00380367718591727
Merged-chr1-152784365-4	chr1	152784270	152784470	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-15783.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	4.81901757308786	5.35672968218115	4.81979576213021	4.80977128969389	5.11545463473681	5.03622413714832	5.01620232304476	5.3887892604304	0.338156496193926	0.315945321141679	0.62781575496774
Merged-chr10-45577890-4	chr10	45577802	45578002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172473)	promoter-TSS (NM_172473)	73.0	NM_172473	209462.0	Mm.458633	NM_172473	ENSMUSG00000038822	Hace1	1700042J16Rik|A730034A22Rik|BC025474	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	protein-coding	6.38959688741726	6.05512532162178	6.21378996543937	6.60793255615499	5.83886913674547	5.99344622538716	5.99912023962394	5.98089774370086	-0.615924388577339	0.0141292605435466	0.100610907986104
Merged-chr4-55531471-5	chr4	55531379	55531579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010637, intron 2 of 4)	CpG	996.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	5.53421087983128	5.61972183766881	5.56300937360973	5.36258332049844	5.71353908806605	5.68297771727513	5.58855499736021	6.07146504976022	0.443192221149765	0.103959228706807	0.354362372356501
Merged-chr16-23988766-4	chr16	23988665	23988865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009744)	promoter-TSS (NM_009744)	87.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	6.77394970823483	7.27410958378434	7.1362595025187	6.41976917472128	6.85615293007498	6.87812695313041	6.39571644556151	6.88071297854214	-0.232569895592906	0.376423237765623	0.679174388869944
Merged-chr2-131510071-4	chr2	131509979	131510179	+	816.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177840, intron 1 of 3)	intron (NM_001177840, intron 1 of 3)	18217.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	3.78240229517806	3.67192486281874	3.57753351919595	3.30015158974832	3.64014056782459	3.69511801740282	3.6173614568826	3.73238666938588	0.284242474820229	0.564063529106497	0.806570732819143
Merged-chr9-95659591-2	chr9	95659491	95659691	+	643.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 2 of 8)	L1MB7|LINE|L1	21963.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	3.07642219530705	2.74966356923043	2.90791312225711	2.65540239833354	2.51415584712001	2.95680791584712	2.63488157570652	3.02118810927362	-0.256628078795625	0.707992324852722	0.882703520735834
Merged-chr13-37337416-4	chr13	37337296	37337496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7949.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.80500831658624	5.94598743824376	6.38187697391414	6.20638824322346	6.03747308517966	5.90480992660248	6.24656975055988	6.36071163340761	0.0602551473574381	0.816908169056289	0.929618484152546
Merged-chr10-80226534-4	chr10	80226423	80226623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023431)	promoter-TSS (NM_023431)	-75.0	NM_023431	68114.0	Mm.273418	NM_023431	ENSMUSG00000020156	Mum1	2610019J09|9430059D04Rik|UBE-1C2	melanoma associated antigen (mutated) 1	protein-coding	8.42236730915726	8.62916491692232	8.45470606171595	8.51581820685153	8.57379589639443	8.36614020359485	8.85316358364981	8.30906472065616	0.0460325422720528	0.794248949180204	0.920431871081515
Merged-chr6-128644181-1	chr6	128644081	128644281	+	571.0	f0_balb.idr	Intergenic	Intergenic	-18204.0	NM_053165	94071.0	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding	3.10538310402181	3.04772598500514	3.41845009777596	3.04918013694121	2.83214843460678	2.8012447326593	3.30789256595783	2.98056827783162	-0.673025427114299	0.28394931044139	0.59597287081378
Merged-chr11-74896600-4	chr11	74896516	74896716	+	980.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197943, intron 1 of 22)	CpG	464.0	NM_197943	97761.0	Mm.245894	NM_197943	ENSMUSG00000038351	Sgsm2	D630003G22Rik|R74628|Rutbc1|mKIAA0397	small G protein signaling modulator 2	protein-coding	5.07151321024287	4.62848277153828	4.76922000430774	4.73155278935698	4.7112705663556	5.14961961379522	4.78380735906866	4.56050333847531	0.0210403229307215	0.952906813028982	0.983276598943455
Merged-chr19-42000081-4	chr19	42000006	42000206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	MIR|SINE|MIR	18343.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	6.40341777540387	6.52180467111652	6.7548151691875	6.61043942869497	6.00644737460402	6.41272347290631	6.4062408752802	6.21085926758327	-0.477611304725643	0.0383909709667551	0.196546850607726
Merged-chr2-13538944-4	chr2	13538823	13539023	+	882.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010067, intron 1 of 10)	intron (NM_010067, intron 1 of 10)	5741.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	4.31765883218571	4.44946693549115	4.27382877645719	3.94908941661122	4.19630725138574	4.3070052067187	4.6046006196405	4.31560823521255	0.277139044765746	0.499306256339757	0.768285523249693
Merged-chr13-55105368-4	chr13	55105374	55105574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_012017, exon 1 of 7)	exon (NM_012017, exon 1 of 7)	165.0	NM_012017	26919.0	Mm.22795	NM_012017	ENSMUSG00000021481	Zfp346	Jaz|Znf346	zinc finger protein 346	protein-coding	4.65341757951873	4.71844895455389	4.84149370004367	4.72266990685933	4.71703383824829	4.82806691929381	4.41568427497103	4.97015826263162	0.0251406362727474	0.942549984710827	0.979183918526066
Merged-chr17-56276921-4	chr17	56276811	56277011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174989)	promoter-TSS (NM_174989)	-144.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	8.8228957478841	8.97660278334146	8.8044351578823	8.58522113400688	8.78283868619639	8.86500445395283	8.71999577206703	8.58577020421295	-0.0724333333977162	0.652647486865559	0.854764223296605
Merged-chr11-116142795-4	chr11	116142710	116142910	+	832.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172571, exon 31 of 31)	3' UTR (NM_172571, exon 31 of 31)	-3942.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	4.1237138119556	4.08664253161624	3.63021203834873	3.92302985092135	3.64646405276028	3.8649326375137	3.93175068727612	3.74323610064792	-0.453490116213661	0.327863327608076	0.639190489551923
Merged-chr4-130802230-4	chr4	130802123	130802323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	9686.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	7.30782728360721	7.01766779445071	7.0696397659693	6.94004393668894	6.99582571019305	7.01028867756273	6.85447434904025	7.35254444769834	-0.0243703521625033	0.907150057888655	0.965624681953793
Merged-chr12-118775591-4	chr12	118775480	118775680	+	826.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70749.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	4.53743455333436	4.43646104940396	4.42168477539038	4.65242808803357	4.28420308133094	4.32678328574261	3.85904420552051	4.14839862727398	-0.849537764258163	0.0358414124425208	0.188043325006003
Merged-chr2-53007394-3	chr2	53007287	53007487	+	710.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	149519.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.46666374705845	3.44482740793159	3.2067721880225	3.45817654762148	3.41281515272831	3.52391897178674	4.18803137840906	3.73194027520471	1.08032168903455	0.0454446675148989	0.218325188245342
Merged-chr7-107607961-4	chr7	107607878	107608078	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163557, intron 1 of 25)	intron (NM_001163557, intron 1 of 25)	1134.0	NM_001163557	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	5.06395450238522	5.19434480737061	4.95679190189462	5.1048656972381	5.48190934051124	5.27310389527883	4.93329128257672	5.28241185404741	0.33617410819851	0.278409669221317	0.590615499225229
Merged-chr8-79139831-3	chr8	79139729	79139929	+	859.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	108754.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	3.21060595165708	3.34829119171754	3.47008515771822	3.24717318703017	4.07666502062051	3.75579605688572	3.71943870135167	3.63395997716628	1.60132283693881	0.00126007663177608	0.0161955569832411
Merged-chr10-67036372-4	chr10	67036294	67036494	+	915.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 3 of 7)	intron (NM_178606, intron 3 of 7)	31319.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	4.64417960692559	4.26314993945336	4.27022819865904	4.48059269816634	4.34647656118205	4.53761313681667	4.78936338016586	4.26766560760543	0.162290163232169	0.6780735757416	0.867974866493993
Merged-chr5-146897146-4	chr5	146897053	146897253	+	961.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51504.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	4.67295590142605	4.99532022784385	4.75913758572427	4.94927585326679	5.30357561817034	4.97669175834828	5.18246100378243	5.20480527243868	0.608501075461964	0.0559500948388044	0.247589170067221
Merged-chr8-11557597-2	chr8	11557497	11557697	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302459)	promoter-TSS (NM_001302459)	-813.0	NM_001302459	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	5.72552433603077	5.76991054263359	6.07742101202208	5.250994150689	5.86259158585451	5.87692679634549	5.77065514914236	5.90997148365913	0.225040341954091	0.441290827875196	0.728396857622944
Merged-chr9-63716354-4	chr9	63716259	63716459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	41635.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	7.25230365511066	7.44809438866998	7.19877441112732	7.01903526625401	7.30696973635509	7.31855379869102	7.28993135382699	7.08871393653492	0.0342798807113576	0.860305404587729	0.947128143348069
Merged-chr11-79076696-4	chr11	79076600	79076800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-16864.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	5.8017870443382	6.13004771847364	5.40018186515617	5.78326108491082	5.67939983176377	5.48157025085681	5.4641168475151	5.65271026503668	-0.38383014729025	0.180515992900966	0.476893733388927
Merged-chr1-85961113-4	chr1	85960996	85961196	+	971.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033290)	promoter-TSS (NM_001033290)	-41.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	4.54697784421513	4.9947878120488	4.71904083090346	5.06365286281473	4.91458605220024	4.97015491056998	4.7363829782135	4.86706908928418	0.0164810518495486	0.962012657108083	0.986374424457963
Merged-chr7-25757341-2	chr7	25757241	25757441	+	808.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001190974, exon 19 of 19)	3' UTR (NM_001190974, exon 19 of 19)	-2582.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	2.59475373678144	2.32713620901838	2.23303310211161	2.35336011871477	2.40805063917889	2.82639670617512	2.58522312378442	2.71468463759943	1.37017844814123	0.0596669040672057	0.257567503462893
Merged-chr9-45296316-2	chr9	45296216	45296416	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-22784.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	3.21034222898813	3.15901287065154	3.37996576468801	3.2104358914191	3.40607305655141	3.25894596253699	3.31318444162531	3.32424761340684	0.336209901230855	0.520489164900103	0.780787600139836
Merged-chr1-72014032-4	chr1	72013914	72014114	+	977.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8819.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	4.42537306548236	4.69582848733872	5.10536420539379	4.8658911642944	4.59120224311047	4.94653481184068	5.02048186836096	4.80701104208764	0.0915444859907506	0.801186117566975	0.923340719847852
Merged-chr11-105944265-3	chr11	105944162	105944362	+	618.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007805, exon 1 of 6)	5' UTR (NM_007805, exon 1 of 6)	225.0	NM_007805	13056.0	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	2.99820645049357	3.33574157349726	3.31640882762196	2.90161434008797	3.52794181566929	3.31159161490609	3.18664134676624	3.56952771971611	0.975424087915538	0.0878447290327753	0.323291404512771
Merged-chr6-83034061-4	chr6	83033951	83034151	+	961.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291799)	promoter-TSS (NM_001291799)	-173.0	NM_013586	16950.0	Mm.380433	NM_013586	ENSMUSG00000000693	Loxl3	Lor2|Loxl2	lysyl oxidase-like 3	protein-coding	4.22657967311531	4.33100757809067	4.36438705650899	4.38570014313923	4.28541784560571	4.25292447009847	4.50573999190341	4.66779201715879	0.239542871256554	0.530878998548192	0.786869282179433
Merged-chr9-118871295-2	chr9	118871186	118871386	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 10 of 13)	intron (NM_001113514, intron 10 of 13)	-55250.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	2.80977204738419	3.1513938811752	2.94598086946755	2.74243887455344	3.22144682777921	3.11931243963393	2.99832170392099	3.18004975099891	0.907776233516317	0.12701872003948	0.396437588841899
Merged-chr12-85490146-4	chr12	85490047	85490247	+	912.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16257.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	4.72796328992906	4.74410331972348	4.96999339109592	4.95330238935205	5.00774547444331	4.40930699943038	4.31387296136778	4.68711506414022	-0.430212954559567	0.260851344212716	0.572776956741021
Merged-chr7-126482611-4	chr7	126482529	126482729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4726.0	NM_172745	233870.0	Mm.197829	NM_172745	ENSMUSG00000073838	Tufm	2300002G02Rik|C76308|C76389|EF-TuMT|EFTU	Tu translation elongation factor, mitochondrial	protein-coding	7.46190767732017	7.33728845037292	7.61349606866704	7.67474896096489	7.40055734998594	7.39202919883402	7.31874378044605	7.19801362737256	-0.271023188344774	0.139930637372668	0.415958856554476
Merged-chr14-70029188-4	chr14	70029072	70029272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 4 of 6)	intron (NM_028560, intron 4 of 6)	-48273.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	5.89881860112138	6.11947198668758	5.72536139144348	5.63658340491729	6.17427777585688	6.22774787698508	6.13955988929313	5.84823138206213	0.408674898730796	0.114445623752196	0.374173214508178
Merged-chr5-102046874-4	chr5	102046775	102046975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	23046.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.78067125195089	5.90601798845238	6.34328861573947	6.47661213972526	5.64490901983946	5.76532351012339	6.42226000822686	6.05805246530671	-0.256176561056195	0.402595781737946	0.700079768116807
Merged-chr18-54963296-6	chr18	54963200	54963400	+	928.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	26880.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	4.14173501454077	4.16986541387779	4.09477974838518	4.02194048911306	4.14394954188207	4.21933441846126	4.16977821570276	4.35396320267406	0.304177099593039	0.441395695063289	0.728497457917831
Merged-chr11-109875986-3	chr11	109875883	109876083	+	625.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30105.0	NR_045909	73257.0	Mm.250442	NR_045909	ENSMUSG00000087393	1700023C21Rik	-	RIKEN cDNA 1700023C21 gene	ncRNA	3.69939656835061	3.83878391989984	3.59360086068106	3.45050408999316	3.62712190302005	3.81868677614362	3.63317377921451	3.53513970220969	0.0339740427145344	0.944051091772383	0.979899564874466
Merged-chr15-100543061-4	chr15	100542948	100543148	+	801.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355497, intron 2 of 15)	IAPEY3-int|LTR|ERVK	8960.0	NM_033476	21422.0	Mm.219040	NM_033476	ENSMUSG00000009733	Tfcp2	CP-2|CP2|D230015P20Rik|LBP-1c|LBP-1d|LBP1|LSF|Tcfcp2|UBP-1	transcription factor CP2	protein-coding	3.37272251591621	3.48986907869008	3.63916565325555	3.05209382478517	3.81363353224858	3.60364764403212	3.10441421147201	3.31111022049014	0.298461842555033	0.612730934964505	0.832832725096038
Merged-chr2-30441954-4	chr2	30441850	30442050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138748, intron 8 of 9)	intron (NM_138748, intron 8 of 9)	25900.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	6.77642546310334	6.71610260517971	6.71921608765894	6.41377742770953	6.80875601150373	7.25573853739675	6.82556299552796	6.78697253615998	0.393493249258403	0.0767443527015083	0.299458598770468
Merged-chr3-107939607-4	chr3	107939484	107939684	+	902.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008184, intron 7 of 7)	intron (NM_008184, intron 7 of 7)	4165.0	NM_008184	14867.0	Mm.458154	NM_008184	ENSMUSG00000068762	Gstm6	-	glutathione S-transferase, mu 6	protein-coding	4.65993731958001	4.42352906810388	4.90939861898399	4.85527917184906	4.38968195324739	4.75416121110517	4.55870814537688	4.83992512875515	-0.198045931984747	0.592844110160381	0.822423445862576
Merged-chr4-123687690-2	chr4	123687552	123687752	+	622.799988	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-3292.0	NM_001199136	11426.0	Mm.402299	NM_009600	ENSMUSG00000028649	Macf1	ABP620|Acf7|Aclp7|MACF|R74989|mKIAA0465	microtubule-actin crosslinking factor 1	protein-coding	3.72539080474577	3.79055247416303	3.7259260996605	3.38453210715577	3.7569554091742	3.73740912769569	3.54943129500874	3.82189696158803	0.20946877364892	0.665264096831221	0.861320791391846
Merged-chr4-86555248-4	chr4	86555141	86555341	+	858.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081096, intron 1 of 3)	intron (NM_001081096, intron 1 of 3)	3062.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	4.06008321370401	3.94917454522259	3.84222113340644	4.32626185340096	4.36985285724929	4.2831662637194	4.39016798796445	4.28792565118584	0.631054360133909	0.136007387287257	0.410445753226738
Merged-chr2-132144706-2	chr2	132144606	132144806	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	CpG	402.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	3.21957547530073	3.49084983224587	3.27650461379857	3.20918903913014	3.09087547907059	3.33112410618629	2.95962892703439	3.15935635423488	-0.637996250095591	0.261313159034807	0.573235771778903
Merged-chr11-83045756-4	chr11	83045652	83045852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5219.0	NR_073524	237887.0	Mm.341645	NM_181542	ENSMUSG00000072621	Slfn10-ps	Slfn10|mFLJ00257	schlafen 10, pseudogene	protein-coding	7.41876940991629	7.75695578375821	7.01078047419091	6.99591568267988	7.2226620423693	7.46793502662923	7.15698669299762	7.05705735893199	-0.132465676487804	0.577667665135186	0.814201742353153
Merged-chr2-152671856-4	chr2	152671771	152671971	+	834.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010376, intron 1 of 11)	intron (NM_010376, intron 1 of 11)	2410.0	NM_001159552	14950.0	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	4.11538834722071	4.16329237073312	4.30186139612225	4.11664825710969	4.45605328257246	4.47175052622788	4.19389429333114	4.38286527842197	0.520454208610666	0.175037179485537	0.469759874768156
Merged-chr19-40692001-3	chr19	40691925	40692125	+	708.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	32255.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	3.34142621261892	3.27045521709734	3.22633548273863	3.3652013770629	3.33858669981049	3.50982351164569	3.21502165930142	3.16304316129542	0.0249685460215057	0.962523973458219	0.986628613450163
Merged-chr3-104791030-4	chr3	104790939	104791139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291859, intron 1 of 4)	intron (NM_001291859, intron 1 of 4)	2005.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	6.2323608175991	6.78109784567895	7.04546763328041	6.62863382517147	5.78654777824003	6.10359608048908	5.61604022185788	6.18900524082249	-1.15125814417605	2.96685157601521e-05	0.000720005210805274
Merged-chr11-102248807-4	chr11	102248705	102248905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153544)	promoter-TSS (NM_153544)	-77.0	NM_153544	217216.0	Mm.247335	NM_153544	ENSMUSG00000034773	BC030867	-	cDNA sequence BC030867	protein-coding	5.63328248654219	5.92855275076673	5.63426792156678	5.25242695319871	6.22354782310163	6.07481870784156	5.68366660485995	5.54677713263585	0.484979300595392	0.115114176300309	0.375422103710937
Merged-chr15-93340844-4	chr15	93340731	93340931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3896.0	NM_024189	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	6.84665496823645	7.35607629615284	6.84785529884479	7.1570084023373	6.97821853771899	7.25664738414472	6.78455560239458	6.95154048119068	-0.106438424991623	0.629342743687654	0.842124810184297
Merged-chr11-3183989-2	chr11	3183888	3184088	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 4 of 32)	intron (NM_030207, intron 4 of 32)	9475.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	4.87661706254576	4.78654143508619	5.31457354986144	4.48496613152931	3.32956659954363	3.73728148361392	3.43894563943381	3.52787460407727	-4.44560397549698	2.05649088358225e-11	1.76147971844164e-09
Merged-chr2-43738676-4	chr2	43738575	43738775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10149.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	6.64722580657825	6.74092633506987	7.11711567499049	7.25680069095258	6.91473111859752	6.80992606064749	6.72280588691811	7.08957982149712	-0.119624157031073	0.604017903860942	0.828350269166784
Merged-chr1-173977810-4	chr1	173977726	173977926	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008327, intron 1 of 6)	intron (NM_008327, intron 1 of 6)	5018.0	NM_008327	26388.0	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	6.51274224780729	6.19747684610579	5.89406240137133	6.53439108574736	5.05273986046893	4.74408463218898	5.04991378505153	4.89969207330009	-2.35439147401062	7.52569287103232e-14	1.01070055257964e-11
Merged-chr10-13832818-4	chr10	13832699	13832899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	36158.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	7.35526743889982	7.49062149706659	7.73845255116957	7.45704568097612	7.96569705185534	7.86776672390888	7.6928950815737	7.48248306411035	0.335082364149817	0.0815815118026348	0.309965326604022
Merged-chr3-31093391-2	chr3	31093291	31093491	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1667.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	4.83014351013376	4.68298841929345	4.39417034987163	4.50502782861619	5.15279552981776	5.20755182128813	5.13062519143036	4.86426262235688	0.992696408022157	0.0029429938789159	0.0315006558356925
Merged-chr14-20702968-4	chr14	20702862	20703062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025366)	promoter-TSS (NM_025366)	-65.0	NM_025366	66121.0	Mm.246996	NM_025366	ENSMUSG00000063787	Chchd1	1110001O19Rik|2400010G13Rik|MRP-S37	coiled-coil-helix-coiled-coil-helix domain containing 1	protein-coding	6.17780337155093	6.46193887602025	6.5977576677403	5.83381487388108	6.15224749051443	6.16337634590425	6.22397452689148	5.98155036321703	-0.23155769998409	0.390979149639474	0.690884161073164
Merged-chr16-14109858-4	chr16	14109762	14109962	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081154, exon 27 of 27)	3' UTR (NM_001081154, exon 27 of 27)	49412.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	5.29060210111708	5.3548548634726	5.03573584586076	5.39619545170385	5.23049166610954	4.89781817692085	5.14475130504877	5.03236010711778	-0.364298681782311	0.236798528767726	0.546852328828692
Merged-chr2-98665145-4	chr2	98665052	98665252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SYNREP_MM|Satellite|Satellite	1197495.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	10.7916838305655	10.0715129228101	11.1869719094736	9.67922641484437	10.6696162023407	10.7115055398232	10.2466588000788	11.7458915253188	0.488852360714176	0.375266120212371	0.678274822106106
Merged-chr13-64439233-4	chr13	64439114	64439314	+	927.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_053180, exon 8 of 8)	3' UTR (NM_053180, exon 8 of 8)	6661.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	4.60125764025366	4.40425724732271	4.75005319954076	5.00930208894589	4.38620678004261	4.37045712441134	4.65599439689318	4.38620992119904	-0.604627287010977	0.117045151109542	0.378516892813543
Merged-chr6-121179226-4	chr6	121179141	121179341	+	751.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4426.0	NR_130903	74043.0	Mm.491240	NM_028730	ENSMUSG00000067825	Pex26	4632428M11Rik	peroxisomal biogenesis factor 26	protein-coding	3.8576969203422	3.57067214153257	3.90320744450555	3.45948215715563	3.58127592898174	3.72435842870689	3.53602545950848	3.7109179940986	-0.185446189547366	0.706431561086118	0.882026349021226
Merged-chr16-33956358-3	chr16	33956255	33956455	+	890.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009471, exon 6 of 6)	3' UTR (NM_009471, exon 6 of 6)	10683.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	4.36032488950842	4.10054567067764	4.19249993805641	4.366083282206	3.97055633419428	3.95275656180502	4.37909846240041	4.04730211662167	-0.428455975094936	0.3059268744617	0.61839573445345
Merged-chr13-94177338-2	chr13	94177238	94177438	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 3 of 3)	intron (NM_172589, intron 3 of 3)	107943.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	3.6951800325146	3.31348439521397	3.20493613345868	3.02614408159042	2.98617597643912	3.67191440184474	3.48490776468383	3.54961535303888	0.395876012475808	0.50925884085782	0.773959348649789
Merged-chr12-69681172-8	chr12	69681110	69681310	+	931.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135559, intron 1 of 22)	intron (NM_001135559, intron 1 of 22)	642.0	NM_001135559	20663.0	Mm.3770	NM_001135559	ENSMUSG00000034801	Sos2	SOS-2|mSOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding	4.84713192198203	4.24723138316929	4.63704997449972	4.98922494769161	4.30932073646499	4.41699186956911	4.31789141732811	4.74372627674297	-0.5834734265099	0.150773336786543	0.433682022918022
Merged-chr5-30907816-4	chr5	30907692	30907892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024460)	promoter-TSS (NM_024460)	-4.0	NM_024460	67695.0	Mm.21450	NM_024460	ENSMUSG00000038803	Ost4	2310016E02Rik	oligosaccharyltransferase complex subunit 4 (non-catalytic)	protein-coding	7.96741208059017	8.15183134824042	7.58230309764374	7.79179415375762	7.75455324535663	7.92414502038484	8.05279558271426	7.66622304851172	-0.0443221072632491	0.82018023850379	0.931186996894099
Merged-chr2-70977785-4	chr2	70977692	70977892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 5 of 9)	intron (NM_145524, intron 5 of 9)	40582.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	6.61271419291232	6.4028606672799	6.97164959454887	7.10908520299232	6.41566539193177	6.62155272763413	6.51503711589678	6.93031253275994	-0.262438206511504	0.300096922842261	0.612248910735458
Merged-chr4-43005907-4	chr4	43005794	43005994	+	986.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053081, intron 8 of 13)	intron (NM_053081, intron 8 of 13)	4407.0	NM_001163233	60534.0	Mm.23122	NM_053081	ENSMUSG00000028453	Fancg	AU041407|Xrcc9	Fanconi anemia, complementation group G	protein-coding	5.75105027797201	5.93518018870902	5.20238698926809	5.26468884660554	5.75628221625969	5.51761470939679	5.62572785188036	5.81644711292608	0.200368579681362	0.51522433349704	0.777425072680732
Merged-chr13-74062247-4	chr13	74062131	74062331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028959)	promoter-TSS (NM_028959)	54.0	NM_028959	74470.0	Mm.73234	NM_028959	ENSMUSG00000021572	Cep72	2610029E11Rik|4933440J22Rik	centrosomal protein 72	protein-coding	7.24196018936352	7.10751696226089	7.8451520185588	7.27381139928674	6.8977045448186	7.19798533246034	7.1181707690552	6.93593195940737	-0.483667900297737	0.0335656280201337	0.180395327707135
Merged-chr17-35089278-4	chr17	35089179	35089379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178592)	promoter-TSS (NM_178592)	-12.0	NM_178592	193742.0	Mm.43745	NM_178592	ENSMUSG00000007036	Abhd16a	AI326074|Bat-5|Bat5|D17H6S82E|NG26	abhydrolase domain containing 16A	protein-coding	7.34651513229474	7.24450909226285	7.16599117094356	7.11101980614948	7.05714310311246	7.30812430590122	7.20784980692314	7.51868562632902	0.0854967611835839	0.661601602405606	0.85945541323944
Merged-chr3-87334180-4	chr3	87334041	87334241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23740.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	7.25942694213061	7.59401955080478	8.1774235997534	6.79402889077486	7.40111293187273	7.46151422303194	7.85887510286558	7.93870306698494	0.175161947614226	0.547299678843325	0.796783882293747
Merged-chr4-120951741-4	chr4	120951629	120951829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005788)	promoter-TSS (NM_001005788)	-28.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	7.70613716545963	7.71515658974339	7.53277756645018	7.61616055959475	7.78797909875977	7.7737859453837	7.95891061249886	7.77362431517577	0.237805256781158	0.15096418911432	0.433967934129002
Merged-chr11-70185327-3	chr11	70185242	70185442	+	981.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	18719.0	NM_010796	17312.0	Mm.252405	NM_010796	ENSMUSG00000000318	Clec10a	CD301a|M-ASGP-BP-1|Mgl|Mgl1	C-type lectin domain family 10, member A	protein-coding	4.30041900125477	3.49283980512564	4.34211834861673	4.59460739447702	3.85575728963782	3.98359461703736	3.84358762706217	4.65759307994844	-0.27021325113643	0.628087551237394	0.841427212108636
Merged-chr17-31077675-4	chr17	31077562	31077762	+	991.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	19968.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	6.18827013963621	6.51532578859233	6.53619038165573	6.9096519439133	5.49541904113193	5.68486350361532	5.37256862206266	5.39582074293156	-1.72113349684904	3.99374605286268e-10	2.76528064490965e-08
Merged-chr2-35209538-5	chr2	35209534	35209734	+	952.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8514.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	4.34356062740355	4.15194726155187	4.3442828971614	3.59515379911128	3.82370734416528	4.30548666875306	3.86323936313293	4.17498433108984	-0.209553975457875	0.666906349385631	0.862176741670962
Merged-chr2-72202415-3	chr2	72202323	72202523	+	756.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 11 of 26)	intron (NM_001355478, intron 11 of 26)	-83214.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	3.03381309703381	3.02239633319406	3.30799429896825	3.27687172433707	3.89131256678976	3.42372475486484	3.57108345213742	3.81297981152576	1.74070614751803	0.00187888359899638	0.0222783700971119
Merged-chr19-36816127-3	chr19	36816047	36816247	+	812.844421	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18085.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	3.61413958171651	3.85801446865786	3.86437978502051	3.89086308148855	3.55972580419054	3.78653579086754	3.48695996321885	3.37180906947974	-0.80705452891045	0.100432703211747	0.347921492320569
Merged-chr11-46252239-3	chr11	46252149	46252349	+	892.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 19 of 30)	intron (NM_001252459, intron 19 of 30)	16692.0	NM_177075	320116.0	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	3.68990012934197	3.45589689392851	3.37110462948662	3.65185446015476	3.28250746839261	3.4847344797227	3.57773882513299	3.48472566936796	-0.328082030456894	0.519928002610082	0.780403845673621
Merged-chr9-60985445-2	chr9	60985345	60985545	+	936.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31624.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	2.31219644257387	2.11856649228414	2.23644069830138	2.19588698261159	2.616817639996	2.55928763910257	2.56909298313172	2.6935230236338	2.33393813970438	0.00163221565718696	0.019975838765975
Merged-chr5-135674499-4	chr5	135674399	135674599	+	707.575012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14646.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	3.91118947770367	3.76249060652865	3.91174965501372	4.14565876665109	3.90045285353597	4.22441193548251	3.67809197032617	4.14035382985535	0.127048905397474	0.782513471983024	0.91529005173258
Merged-chr15-83134418-4	chr15	83134248	83134448	+	963.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 3 of 7)	intron (NM_001347082, intron 3 of 7)	-11547.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	3.44958249046283	3.56166653413598	3.56069197755585	3.42808944620037	3.93546870990357	3.23569640831646	3.43721434364255	3.61055135185223	0.305935525373096	0.565276874017929	0.807429816497876
Merged-chr5-140105944-4	chr5	140105854	140106054	+	980.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359025, intron 14 of 17)	intron (NM_001359025, intron 14 of 17)	68964.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	5.4324324916793	4.80118632995484	5.6979320745103	5.4885121715793	5.06671289469591	4.73357514377973	5.68979311405609	4.94727143228204	-0.419090019625948	0.278922631820287	0.59113991395969
Merged-chr12-79725090-4	chr12	79724992	79725192	+	994.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	199641.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	5.12591846496814	4.77432331816652	4.46155550532363	5.19628865540213	5.23214941154945	4.91393082456943	5.07077890876474	4.92557983796995	0.215491683205026	0.550409299440177	0.798628080141532
Merged-chr15-58818204-4	chr15	58818115	58818315	+	854.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175212, intron 1 of 6)	MLT1D|LTR|ERVL-MaLR	5212.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	4.09099535067207	3.79545185138045	3.99717298404566	4.66834274771765	3.79223234465474	3.96315068652926	3.7123212992553	4.08908261363156	-0.810279778155691	0.102528739665328	0.351723010938945
Merged-chr4-70412263-4	chr4	70412194	70412394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1859.0	NM_145990	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	8.02131466897797	7.67342618877432	8.11508464531693	8.12618842275184	8.34575684562807	8.30549191824832	8.3942680373676	8.49053292950001	0.492260297232661	0.00450135768645709	0.0439629718392329
Merged-chr7-35076719-4	chr7	35076618	35076818	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20152.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	4.36229858523183	4.22787320680377	4.36295804999325	4.49852490395589	4.84594876196415	4.49259290873007	4.63076927607961	4.78962006721431	0.722145173924362	0.0484283168026414	0.227185147659456
Merged-chr10-4107826-4	chr10	4107720	4107920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 26 of 27)	intron (NM_001170785, intron 26 of 27)	105300.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	7.99833020461531	8.40411371685397	8.3929136003608	8.33531138137587	6.1155900572925	6.86232415278943	6.71176907716621	5.91969267471892	-2.4929417471396	7.02472020978492e-23	3.31134145571047e-20
Merged-chr6-91472393-4	chr6	91472307	91472507	+	892.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133928, intron 1 of 2)	MIR3|SINE|MIR	1016.0	NM_133928	72170.0	Mm.41622	NM_133928	ENSMUSG00000034203	Chchd4	2410012P20Rik|2810014D17Rik|AI838740	coiled-coil-helix-coiled-coil-helix domain containing 4	protein-coding	4.24856095397623	3.99425793329775	4.01179030721414	4.34466883198297	4.38945084095934	4.02513720542178	4.313163070389	4.20253581256669	0.18778692416618	0.651505745898372	0.853996129818332
Merged-chr4-149738112-4	chr4	149738021	149738221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177672)	promoter-TSS (NM_177672)	-53.0	NM_177672	230917.0	Mm.266704	NM_177672	ENSMUSG00000044700	Tmem201	AV028368|D4Ertd429e|Net5|Samp1	transmembrane protein 201	protein-coding	7.47891850095297	7.55897029771405	6.85721508329943	7.28487165661315	7.64644843303672	7.64795470027324	7.53229834958303	7.33813510423715	0.300250255207279	0.156785751322278	0.442893690014765
Merged-chr7-79149032-2	chr7	79148944	79149144	+	913.2000119999999	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_008594)	promoter-TSS (NM_008594)	16.0	NM_001045489	17304.0	Mm.1451	NM_008594	ENSMUSG00000030605	Mfge8	AA408458|AI325141|MFG-E8|MP47|Mfgm|P47|SED1|lactadherin	milk fat globule-EGF factor 8 protein	protein-coding	4.10688680772283	3.81104439502618	4.26396088787391	4.08435025960438	3.28928519316149	3.6609400142369	4.00292186361354	3.47404912621002	-1.3179548748977	0.0117523712828227	0.0885395888590215
Merged-chr3-9250725-4	chr3	9250642	9250842	+	857.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177660, exon 1 of 6)	5' UTR (NM_177660, exon 1 of 6)	175.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	4.38107770064616	3.9996701424116	4.53075107854479	4.1900594200356	4.18901396963075	4.08798729112415	3.94857846623804	4.29731160117335	-0.357379410937555	0.396877754898514	0.695488741836657
Merged-chr17-50394135-4	chr17	50394052	50394252	+	895.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100532.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	4.29083674546081	4.58106856072202	4.29149391235022	4.10740162078345	4.72422207776199	4.37309548320871	4.18005014900708	4.09497124723324	0.135783073335945	0.748869454987562	0.901109312321074
Merged-chr6-108836387-4	chr6	108836279	108836479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138677, intron 1 of 11)	intron (NM_138677, intron 1 of 11)	7738.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	7.10941683522275	7.35182480732707	7.30401939817514	6.89143343717293	6.89511829618578	7.17800346718746	6.95331977473633	7.02141715278705	-0.214414659363536	0.301827581282079	0.614068067457757
Merged-chr8-11635824-4	chr8	11635716	11635916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281975)	promoter-TSS (NM_001281975)	-59.0	NM_001281974	102334.0	Mm.12459	NM_133971	ENSMUSG00000031508	Ankrd10	4833425P12Rik|AW549277	ankyrin repeat domain 10	protein-coding	7.70345627227447	7.40053512370134	7.3192351930497	7.58532853647574	7.48016137045979	7.62903409159839	7.8566714659318	7.24796339157855	0.076510881581014	0.707416172335216	0.882444677286559
Merged-chr6-124282907-1	chr6	124282807	124283007	+	708.0	f0_balb.idr	Intergenic	Intergenic	-21744.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	3.56519246538714	3.61846066355804	3.67124023301447	3.70609317465313	3.45418262680749	3.43784513795821	3.70515470406789	3.71872247107689	-0.201156284937664	0.677446814692476	0.867687308998898
Merged-chr19-29355050-4	chr19	29354930	29355130	+	924.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026362, intron 3 of 5)	intron (NM_026362, intron 3 of 5)	6841.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	4.34502002344919	4.28376152552709	4.47395794565028	4.14957170343616	4.66167120408257	4.56259071725432	4.45332091856164	4.42978832017609	0.540350276858433	0.146025623121126	0.425918360343095
Merged-chr17-29601569-4	chr17	29601465	29601665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198647, intron 12 of 12)	intron (NM_198647, intron 12 of 12)	-5260.0	NR_045447	74092.0	Mm.396264	NR_045447	ENSMUSG00000089900	Tbc1d22bos	0610038L08Rik	TBC1 domain family, member 22B, opposite strand	ncRNA	5.89243216742877	6.04870915401116	5.62321223636061	5.86742816087385	5.54198318682225	5.59490586434242	5.88518287192353	5.82117241002856	-0.256735713661666	0.331960285415852	0.643055455679069
Merged-chr11-3667704-4	chr11	3667607	3667807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198162, intron 3 of 25)	intron (NM_198162, intron 3 of 25)	9007.0	NM_198162	74522.0	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	5.20794087613228	5.49758546804273	5.44466099909271	5.92899638173287	6.05367961107502	5.87100147554043	6.03499146727533	5.61354928136072	0.549883410973086	0.070966348536737	0.285690951754045
Merged-chr17-36836297-4	chr17	36836283	36836483	+	932.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286727)	promoter-TSS (NM_001286727)	-763.0	NM_001025599	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	3.83748562193032	3.51354920192136	3.57002446979005	3.2228308590898	4.93600613747784	4.88284347060422	4.51806004697836	4.50139586298705	3.22251672077835	7.00846263415282e-13	7.6746978744056e-11
Merged-chr9-109021965-3	chr9	109021864	109022064	+	925.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 9 of 13)	intron (NR_153430, intron 9 of 13)	-16603.0	NM_001284332	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	4.03157201391083	4.22749889093389	4.42228461143101	3.88030610248158	4.05966896094341	4.20689565783012	4.11175695881424	4.21778356378345	0.0120257665125245	0.977410242899942	0.991888117862217
Merged-chr11-17002056-2	chr11	17001976	17002176	+	712.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	L1_Mus1|LINE|L1	6642.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	3.3855342000674	3.15920974476241	3.04794914590388	2.98472217567851	3.0428812279999	3.15833638415781	3.21536019956104	3.2263109751284	0.0587069987841989	0.917412642993186	0.969569629036555
Merged-chr2-122184080-3	chr2	122184011	122184211	+	889.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026251, intron 1 of 17)	RLTR35B_MM|LTR|ERVL	2078.0	NM_026251	67578.0	Mm.150462	NM_026251	ENSMUSG00000027233	Patl2	4930424G05Rik|Pat1a	protein associated with topoisomerase II homolog 2 (yeast)	protein-coding	4.10753175365237	3.81312813249896	3.7698647471222	4.06149413547347	3.00272359419766	3.35667622042421	3.15732974720885	3.55767235044213	-2.38602296874402	5.59589449733246e-05	0.00124705752794498
Merged-chr2-104027767-4	chr2	104027673	104027873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020593)	promoter-TSS (NM_020593)	-26.0	NM_020593	57443.0	Mm.143768	NM_020593	ENSMUSG00000027180	Fbxo3	1200002G09Rik|1700026K02Rik|AI046358|Fba	F-box protein 3	protein-coding	7.3526613089839	7.52024040440072	7.14251501408561	7.48202841336765	7.48335952410228	7.44647851266888	7.47984429081451	7.44720696603744	0.0983370300580016	0.586553574516308	0.818729593295216
Merged-chr17-53463363-4	chr17	53463255	53463455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172497)	promoter-TSS (NM_172497)	-34.0	NM_172497	211482.0	Mm.60887	NM_172497	ENSMUSG00000023931	Efhb	4921525D22Rik	EF hand domain family, member B	protein-coding	7.12173793880376	6.82228013226101	6.5934735982194	7.03194409893741	7.03749599228543	6.98688127149934	6.90963711397481	6.6545137059864	-0.00718935025300971	0.973695834409878	0.990570637473211
Merged-chr9-123058891-4	chr9	123058777	123058977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177911, intron 10 of 13)	L1M4|LINE|L1	24136.0	NM_177911	331046.0	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	5.61616464613759	6.11379585179741	6.45159934483904	6.15398600787302	6.2544507293818	6.21351972683684	6.56891932434113	6.32916577533783	0.345858279386637	0.189925774350357	0.489029326164233
Merged-chr2-29817795-3	chr2	29817695	29817895	+	856.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011989)	TTS (NM_011989)	-9594.0	NM_026615	68205.0	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	3.3061435243329	3.36816048998134	3.19047167630213	3.12265337035154	3.36186514360425	3.23874283392696	3.05366342025989	3.41104137076081	0.119272188493689	0.827332739213679	0.933797258511357
Merged-chr7-98086225-4	chr7	98086125	98086325	+	817.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 15 of 48)	intron (NM_008663, intron 15 of 48)	23023.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	4.32262614440784	3.75740971258639	3.78566325921668	3.95033258270039	4.11116076667639	4.13247103363866	4.51987040943681	4.27993321714203	0.761885472697852	0.0832335769551941	0.313564241245568
Merged-chr15-35371356-7	chr15	35371264	35371464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177151)	promoter-TSS (NM_177151)	-182.0	NM_177151	666173.0	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	5.58347285153402	5.37279943656216	5.50280454459702	5.61495677812287	5.47525157789969	5.64948371057816	5.70424062833497	5.63209751405311	0.141518616927675	0.596519034649538	0.824763084775344
Merged-chr18-67461012-4	chr18	67460915	67461115	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3834.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	5.13843481314818	4.96631392914439	5.29334277334597	5.59436305046439	4.99282937907487	5.02538494012018	5.29541205398753	5.10264412601453	-0.339875610009072	0.30015071722643	0.612251288689364
Merged-chr8-111027770-4	chr8	111027690	111027890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190800)	promoter-TSS (NM_001190800)	-20.0	NM_001190800	234733.0	Mm.482176	NM_172284	ENSMUSG00000033658	Ddx19b	2810457M08Rik|4921519L13Rik|AW260119	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	protein-coding	6.31022494239046	6.44884290283183	6.47692977209001	6.68445600957196	6.54794219052821	6.58298358555529	6.80000984292351	6.79039361183828	0.258837744310496	0.238118330773562	0.54845887668289
Merged-chr12-35384375-3	chr12	35384290	35384490	+	715.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150599.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	3.67960043390055	3.29140297030649	3.7300227951278	3.65179657990097	3.68916340088013	3.74560706500111	3.56024005626495	3.62616378021378	0.180615936647983	0.712202993402065	0.884802891530799
Merged-chr3-79286803-4	chr3	79286703	79286903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-58573.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	6.36518196666069	6.08052838822567	6.22112460522886	6.07242352253078	6.22686673708297	6.09612492616546	6.17001284126373	6.4284425432663	0.0883057270636067	0.704612300963086	0.881310166764805
Merged-chr13-45444896-4	chr13	45444791	45444991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55149.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	6.41628752211485	6.78088565283482	6.74752697611375	6.59926617723688	5.87780501223821	5.61067210169293	5.76333438995247	5.45507161889372	-1.45617039338063	8.32024862428106e-09	4.4730134201488e-07
Merged-chr2-26380540-4	chr2	26380335	26380535	+	942.488098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290419, intron 1 of 23)	CpG	218.0	NM_172339	227644.0	Mm.207460	NM_172339	ENSMUSG00000036281	Snapc4	5730436L13Rik	small nuclear RNA activating complex, polypeptide 4	protein-coding	3.40235084498343	3.6172044354813	3.72700202339986	3.1904943748333	3.56020919358143	3.45531614767924	3.56042495952931	3.86017959979839	0.411482481155426	0.432425397984072	0.722441201809841
Merged-chr7-27302435-3	chr7	27302354	27302554	+	999.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31194.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	2.55956721830796	2.35840356647296	2.55981830353502	2.45369203788733	3.19573818001371	2.99833562804451	2.75491821802091	2.82569004803334	2.35503422412734	0.000618974256538279	0.00916285528099627
Merged-chr9-106822673-7	chr9	106822499	106822699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015507, intron 1 of 22)	CpG	623.0	NM_001015507	321006.0	Mm.440089	NM_001015507	ENSMUSG00000040325	Dcaf1	AI447437|B930007L02Rik|Vprbp|mKIAA0800	DDB1 and CUL4 associated factor 1	protein-coding	5.4557881055618	5.65960788645907	5.11999397103872	5.05244101942594	5.94196160003414	6.03316100936667	5.67007440324441	5.83418204996007	0.918366519982066	0.00171098225619616	0.0206872780726663
Merged-chr4-53198526-4	chr4	53198425	53198625	+	912.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-38630.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	4.67485003827988	4.28575474594363	4.7124267622929	4.08983691445074	4.77357920304535	4.88355591689241	4.53713249304827	4.55539782189467	0.549530994474694	0.163102169521481	0.452706698401916
Merged-chr5-139060598-3	chr5	139060483	139060683	+	830.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359099, intron 6 of 10)	intron (NM_001359099, intron 6 of 10)	-65630.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	3.27135032005378	3.33363456298678	3.15674870906031	3.48547005540981	3.08725693523918	2.99734262546732	3.14574153923259	3.21390179509796	-0.830258560924374	0.14231133144462	0.419826685216207
Merged-chr9-51030364-4	chr9	51030272	51030472	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-21299.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	5.42987105618113	5.12838489375194	4.79307249365735	4.90914554263566	5.25601030129661	5.15977316107396	5.02967899876978	4.87001447460689	0.0276203004362185	0.934405580973325	0.976356212091203
Merged-chr10-41933060-4	chr10	41933004	41933204	+	882.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 12 of 17)	intron (NM_001034858, intron 12 of 17)	45665.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	4.03808029584906	3.88034784544922	4.03867427777948	4.23030043664001	3.76906240777209	4.21119715899178	4.32043923234586	4.13010330596796	0.137365303224534	0.756083811636367	0.904159100355911
Merged-chr9-15306211-4	chr9	15306091	15306291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027261)	promoter-TSS (NM_027261)	-23.0	NM_029248	75316.0	Mm.354115	NM_026541	ENSMUSG00000031939	Taf1d	2810003M17Rik|4930553M18Rik|5930426I11Rik|Josd3|TAF(I)41|TAFI41	TATA-box binding protein associated factor, RNA polymerase I, D	protein-coding	7.92599374409762	8.12822604721925	7.45299435185648	7.77957263758791	8.18069352454422	8.05449435135883	7.78661789323829	7.81921500689894	0.166485642509727	0.414447976232027	0.709044594374843
Merged-chr4-150156389-4	chr4	150156291	150156491	+	966.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085529, intron 4 of 11)	intron (NM_001085529, intron 4 of 11)	7419.0	NM_001085529	435818.0	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	-	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	4.50427120509372	4.27670626665643	4.82200600050621	4.84951493836912	4.75391291622752	4.27644999920714	4.96140837385155	5.12761917135561	0.365012603806891	0.370527813494839	0.674751360956441
Merged-chr8-39298669-3	chr8	39298563	39298763	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_044988, intron 1 of 3)	intron (NR_044988, intron 1 of 3)	683.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	5.71529551695215	5.48109970643098	5.56952725749065	6.20397000062397	3.74002423008413	3.94286559026262	3.86129735581697	3.79852496684572	-5.17396188799725	7.50453963075838e-18	1.89420434885727e-15
Merged-chr6-72377138-3	chr6	72377035	72377235	+	924.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016872, intron 1 of 2)	intron (NM_016872, intron 1 of 2)	3333.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	4.61084421948786	4.43567080980228	4.19568765740337	4.95739004095059	3.86928361114442	3.98877603979382	3.96775424182894	4.60846928135115	-1.07166506661726	0.0223118685022726	0.137751451827848
Merged-chr12-70110114-4	chr12	70110021	70110221	+	833.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286079, intron 1 of 28)	intron (NM_001286079, intron 1 of 28)	1508.0	NR_104398	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	3.93851809962375	3.59921526804203	3.93909398448991	4.17294554200155	4.11271770215517	3.661881238406	3.82254941474206	4.15881537842366	0.0578210272676346	0.904435036890614	0.964559678221358
Merged-chr18-34222867-4	chr18	34222760	34222960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007462, intron 1 of 15)	intron (NM_007462, intron 1 of 15)	-1088.0	NR_040534	633395.0	Mm.414290	NR_040534	ENSMUSG00000073607	Gm10548	-	ribosomal protein L29 pseudogene	pseudo	5.70297992967135	5.72135033062655	5.44273793388616	6.1459897119308	6.19826261612303	5.59093034270832	5.79929704122229	6.21082518525861	0.295135915621904	0.332388773731058	0.643434879668289
Merged-chr9-96535818-4	chr9	96535668	96535868	+	906.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-57093.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	3.43211601156528	3.09834341179417	3.19758868306204	3.25143951981143	3.28015716089323	3.5484406734714	3.41859935175029	3.58219131381813	0.733653600982364	0.16370936068307	0.453499458418378
Merged-chr11-116077631-4	chr11	116077550	116077750	+	984.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347642)	TTS (NM_001347642)	311.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	5.06132314837274	5.26184439776136	4.65910510693737	4.97024903447148	5.46981500912712	5.09349594094133	5.5177939852596	5.22118233334089	0.62279805270086	0.0534221786121336	0.24121652191278
Merged-chr2-5801443-4	chr2	5801357	5801557	+	950.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133837, intron 10 of 12)	intron (NM_133837, intron 10 of 12)	-43577.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	5.06498841537882	4.36145165562091	5.28641424928457	5.27682456888297	4.53361521004484	4.38298594231922	4.77489664998918	4.59372964571388	-0.976066768669352	0.0149586095553335	0.10461179696788
Merged-chr14-106500858-1	chr14	106500758	106500958	+	662.0	f0_balb.idr	Intergenic	Intergenic	-14338.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	3.28889734876469	3.12613342563464	3.34577602050581	3.53160529303801	3.28323726895904	3.07170257587674	3.27715467832609	3.54716417760667	-0.121925719987256	0.828455259900151	0.934169961374777
Merged-chr15-77982352-2	chr15	77982252	77982452	+	784.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11528.0	NM_018749	55944.0	Mm.3955	NM_018749	ENSMUSG00000016554	Eif3d	66/67kDa|AA407891|Eif3s7|eIF3p66	eukaryotic translation initiation factor 3, subunit D	protein-coding	3.3336027131934	3.53121243616348	3.274502952156	3.15066916244351	3.70709773395871	3.32430666354258	3.13700024539153	3.49572843181184	0.404582032095948	0.465289200200808	0.745811792142008
Merged-chr12-110764743-4	chr12	110764645	110764845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347428, intron 1 of 2)	intron (NM_001347428, intron 1 of 2)	26813.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	5.71284479321754	6.00232078473506	6.30252590412084	6.42880337486494	5.99088713891505	5.52821593222453	5.60262226065922	5.97449319171307	-0.55945463799357	0.0544336119465686	0.243534247246073
Merged-chr4-35165423-4	chr4	35165313	35165513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7929.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	7.15359273460195	6.96253245910559	7.27083534415314	7.19594249856425	6.95635728433722	6.78815886412773	6.9417125311665	6.76483378059864	-0.388126009005521	0.0460452877818586	0.220279302468384
Merged-chr4-40852680-4	chr4	40852587	40852787	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	1850.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	5.59222803355239	5.30642934710677	5.64042703309649	5.12594526792988	4.95209223901968	5.12850168449063	5.56464261858631	5.1300425777874	-0.380425060817344	0.247244083964774	0.558259949642452
Merged-chr14-18234996-4	chr14	18234885	18235085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011584, intron 1 of 7)	intron (NM_011584, intron 1 of 7)	4121.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	4.73659108023408	5.52736245576362	5.42193116298121	5.79419142371615	5.59530752480683	5.83722769355868	5.4800888317512	5.73122174727995	0.376558209618589	0.271030528388968	0.582795057102241
Merged-chr3-9946681-4	chr3	9946583	9946783	+	967.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65902.0	NM_001272097	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	5.12108349942736	4.94979179683131	5.24678595258509	5.67765288451654	5.11132734419378	5.04704214648134	5.03016212858176	4.94316251127832	-0.495295381093281	0.143471332056075	0.42182435855639
Merged-chr8-34929747-4	chr8	34929638	34929838	+	734.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 2 of 26)	MTD|LTR|ERVL-MaLR	35952.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	4.30202382158862	4.04420724488452	4.30271960703324	4.20450565285546	3.917767350137	4.06151913812445	3.97397471642721	3.82747685790482	-0.717848102192339	0.0878055637117988	0.323276895434859
Merged-chr4-32280558-4	chr4	32280483	32280683	+	902.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136852.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	4.82099505268792	4.63629098561802	4.95105605288481	4.89270460028471	4.24112180655254	4.40805604875308	4.49462275022607	4.63585646869821	-0.855200274240218	0.0185100848942582	0.121576943128947
Merged-chr6-108688539-4	chr6	108688434	108688634	+	802.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27600.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	3.89695212873771	4.55607362681817	4.45384613068888	3.82192188476462	4.08464456481085	3.96241931241158	4.50467112498131	4.24751159899071	-0.00728009768355835	0.987688403498296	0.995315979319888
Merged-chr3-116450907-4	chr3	116450798	116450998	+	733.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26866.0	NM_001173553	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	3.70526732099431	3.8218788138964	4.28832276661818	3.75639384107507	3.88932724684414	3.94583838114157	4.57371847684968	3.92771719953524	0.549375354568331	0.257460805929336	0.569254085430381
Merged-chr6-40430371-3	chr6	40430274	40430474	+	638.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356375, intron 1 of 8)	intron (NM_001356375, intron 1 of 8)	5761.0	NM_001356375	243780.0	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	3.50129737884749	3.68096832571437	3.01203450127864	3.40111545331228	3.35893478575152	3.32913749165732	3.32635201894133	3.39359549790352	-0.243058948603731	0.663008268127981	0.860346663968351
Merged-chr5-76517718-2	chr5	76517618	76517818	+	829.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-11589.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	2.78369005863687	2.88430968603261	2.78395446791877	3.00003258678834	3.05257608993471	3.20986294614235	2.97123337618443	3.20413420785248	0.968632614551152	0.108655930779646	0.363902531264499
Merged-chr1-133610384-4	chr1	133610303	133610503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009227)	promoter-TSS (NM_009227)	-123.0	NM_009227	20643.0	Mm.249110	NM_009227	ENSMUSG00000090553	Snrpe	AL022645|C76690|SME	small nuclear ribonucleoprotein E	protein-coding	7.69436326521012	7.81929066435318	7.67047372351139	7.77554472352313	7.88705467475063	7.95330459109531	7.85717455617605	7.63093417082941	0.12270499768247	0.465666269569591	0.746129622151024
Merged-chr13-49190210-4	chr13	49190113	49190313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	2666.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	7.54869697477222	7.78450274695013	8.12656488399927	8.06616739719507	7.67326016613531	7.68963307420871	7.93742926835727	7.61773674812276	-0.224437230969988	0.254318842379662	0.565657173981063
Merged-chr4-126155271-4	chr4	126155156	126155356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025856, intron 6 of 11)	MTE2a|LTR|ERVL-MaLR	7253.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	5.58866535379783	4.9874476980713	5.42230579274833	5.19438447556505	4.92383054490826	4.56178809727121	5.04479985165894	5.09954154475594	-0.729056641991047	0.0335705265711616	0.180395327707135
Merged-chr3-158077582-4	chr3	158077494	158077694	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40912.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	5.88849361083443	5.47838519974009	5.97526077357115	6.10281757695465	5.84971565774339	5.26800178273191	6.09926356337323	5.5293309740734	-0.254934856298348	0.413571225229108	0.708480186817888
Merged-chr2-73566293-4	chr2	73566183	73566383	+	897.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007389, exon 9 of 9)	exon (NM_007389, exon 9 of 9)	14055.0	NM_007389	11435.0	Mm.4583	NM_007389	ENSMUSG00000027107	Chrna1	AI385656|AI608266|Achr-1|Acra	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	protein-coding	4.4077542232969	4.21701102910772	4.0577530099115	3.9502304802047	4.42399772149065	4.13015193804708	4.18226701698824	4.10477617854355	0.17244476446215	0.679893297787351	0.86857902618052
Merged-chr5-120515440-4	chr5	120515329	120515529	+	978.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 2 of 13)	RSINE1|SINE|B4	4237.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	4.69540292797501	4.98713799519847	4.88829441038445	4.99158099691169	5.24591327250565	4.95097542645702	4.71501210606913	4.60763909593349	0.0308127062334799	0.930632999638268	0.975042479384635
Merged-chr7-28175530-4	chr7	28175411	28175611	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007991, intron 4 of 8)	intron (NM_007991, intron 4 of 8)	-3972.0	NM_001037957	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	4.85812346684278	4.32018804081728	4.71441679808328	5.2517935692846	4.58197039217872	4.15615922797393	4.80093534120257	4.92203643271888	-0.407432366055233	0.346460891677052	0.654719806798213
Merged-chr19-10034966-3	chr19	10034853	10035053	+	863.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153790, exon 10 of 11)	non-coding (NR_153790, exon 10 of 11)	-6595.0	NM_021890	60527.0	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	3.11092363429352	3.12231711323306	3.34592293472555	3.13403893843653	3.10117003122608	3.34667609106886	3.4338625941431	3.28931364573791	0.431065996520711	0.427097541316212	0.718329235229673
Merged-chr19-4066493-7	chr19	4066430	4066630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-7083.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	5.46299123931987	5.61347852049122	5.32090795554574	5.35917318382794	5.10364994634016	5.40222169713964	5.38162070893456	5.22306846729144	-0.299203217888873	0.301067365044004	0.612994478573963
Merged-chr5-103756425-4	chr5	103756361	103756561	+	932.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	1888.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	4.52633969368792	4.26003978860355	4.24584699784548	4.37599262948898	4.14779630611456	3.94696439843144	4.13489907860088	4.41130584820169	-0.457128826686542	0.259148254513776	0.570991804521054
Merged-chr10-13964792-4	chr10	13964690	13964890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1285.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	8.65180548450833	9.07944987238763	9.20590147484194	8.97018493367271	8.85673164291157	9.0438093463475	9.15060212806057	8.67970951277144	-0.0605154037017022	0.740217108450296	0.897747679503546
Merged-chr16-94969159-1	chr16	94969059	94969259	+	1000.0	f0_balb.idr	intron (NM_001025584, intron 1 of 4)	intron (NM_001025584, intron 1 of 4)	28537.0	NM_001025584	16522.0	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	3.49143057998785	3.76688176216139	4.06103297573395	3.90032949152962	2.93514097463183	3.07292167286637	3.17251595667366	3.03599768831454	-3.18666411174795	2.10626490181706e-06	6.84887297608206e-05
Merged-chr14-30624442-4	chr14	30624341	30624541	+	815.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	1767.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	4.29799975187628	4.3104918293558	4.61748545212906	3.93195469937721	4.45741540121934	4.1760914588452	4.52327880736834	4.42492007653379	0.259614959242944	0.532762074796921	0.788274148708907
Merged-chr12-8547453-4	chr12	8547341	8547541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177802, intron 2 of 6)	intron (NM_177802, intron 2 of 6)	-7875.0	NM_001286385	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	7.15360594655507	7.07536199736011	7.09036187537486	7.03035685892453	6.27449638430844	6.13395741683999	6.61038623750883	6.59152713955073	-0.954695997625431	8.81325153608996e-06	0.000246200326172428
Merged-chr9-43303194-4	chr9	43303110	43303310	+	966.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-7553.0	NM_023655	72169.0	Mm.273277	NM_023655	ENSMUSG00000032013	Trim29	1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726	tripartite motif-containing 29	protein-coding	5.30238866036028	5.73215443600759	5.23931293696313	5.82342643499213	4.74789431389271	5.5684497983754	5.2134734545547	5.47414584963332	-0.501582331605728	0.149792990146279	0.432207030914183
Merged-chr8-70833758-1	chr8	70833658	70833858	+	1000.0	f1_balb.idr	Intergenic	Intergenic	5962.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	3.77754949148454	4.22191136779434	4.39364088407128	3.38641498024655	3.90324186339324	3.95677116605586	3.70616496308349	4.030646314987	-0.261957851683717	0.619279917235534	0.836443295487733
Merged-chr14-14673460-3	chr14	14673342	14673542	+	836.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29583.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	3.78541743800862	3.54962565029042	4.01646315633308	4.04989909272689	3.95257748121797	3.48756243167834	3.66637883079558	3.67861604251481	-0.453317546436806	0.365599706906768	0.670295715323899
Merged-chr5-72203288-4	chr5	72203180	72203380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153389)	promoter-TSS (NM_153389)	-49.0	NR_003966	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	7.76711865200597	7.98780480348462	7.64234318043003	8.08905807711922	7.85474947069057	7.88037739718059	8.19740430139815	7.66336428374665	0.0268737767052335	0.891112968850894	0.959258016639054
Merged-chr17-37046809-4	chr17	37046615	37046815	+	882.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019439, exon 2 of 23)	exon (NM_019439, exon 2 of 23)	749.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	3.98079485827588	3.86446613165975	3.72353802715812	3.98515288719962	4.16801139613376	3.8422176280543	3.70961526911349	4.06898368893963	0.192699997269776	0.669632927978854	0.86357079102718
Merged-chr19-37135671-4	chr19	37135594	37135794	+	818.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290829, intron 3 of 9)	(T)n|Simple_repeat|Simple_repeat	-38149.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	4.03734812851242	3.8623670620691	3.59501446605198	3.29806247636106	4.06043691949409	3.45448525302708	3.58130421792877	3.99312703206569	0.227980721869131	0.676289495816538	0.867094121602346
Merged-chr17-70987554-4	chr17	70987460	70987660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	B4A|SINE|B4	2956.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	6.05338440384545	6.3689858368185	6.09689228802838	5.94872939986084	6.22285587411152	6.2725130622939	6.25773107757124	5.91371088482805	0.0875608476444925	0.721045017962573	0.888617497696901
Merged-chr17-43017052-2	chr17	43016945	43017145	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178589, exon 1 of 6)	exon (NM_178589, exon 1 of 6)	490.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	3.85005678307979	3.75211074871573	3.85059980962936	3.66520173796119	4.06286392682849	3.97306721844218	3.98406195495545	4.43570148710394	0.972804459470198	0.0256160311861589	0.15099987443475
Merged-chr10-121310954-4	chr10	121310842	121311042	+	867.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029057, exon 1 of 12)	5' UTR (NM_029057, exon 1 of 12)	454.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	4.06711651270651	3.90195943587296	4.19707498417952	4.27692767629992	3.61258371700903	4.04612058872193	3.74750187257066	3.97118232392468	-0.772832303133311	0.0895061750936291	0.326648894431369
Merged-chr1-171262871-2	chr1	171262763	171262963	+	841.8333130000001	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172845)	TTS (NM_172845)	-7465.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	3.32023764363956	3.1557403219366	3.06603965059826	3.38545177464577	3.50669242916535	3.37358525470608	3.46903817426238	3.53140771354965	0.778523165822712	0.144409699045775	0.423506982340208
Merged-chr15-83129747-4	chr15	83129653	83129853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 6 of 7)	intron (NM_001347082, intron 6 of 7)	-6952.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	5.70657513460128	6.18882053833235	5.53985152534319	5.97457521255774	6.00010079306428	5.88388200487935	5.80261616283119	5.77974241284296	-0.0226822627706032	0.933496890265471	0.97600189092281
Merged-chr17-5796079-4	chr17	5795965	5796165	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2592.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	5.70449126355201	5.91267904082294	5.26629468417676	5.77421831633661	5.77902418238086	5.54518622059739	5.65175255458153	5.72595260699158	-0.02077041647878	0.940864448054178	0.978676631829834
Merged-chr18-64517462-3	chr18	64517433	64517633	+	865.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027350)	promoter-TSS (NM_027350)	-976.0	NM_001142950	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	2.47418027887265	2.14569775204675	2.11345907235905	2.27382899771202	2.25428140876784	2.51555074323152	2.46495650598375	2.64988495246924	1.24185180720868	0.108049566692726	0.362656675042275
Merged-chr15-100761720-4	chr15	100761618	100761818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021530)	promoter-TSS (NM_021530)	-29.0	NM_021530	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	5.98375027647986	6.09633841918726	5.8676968142459	5.9194253004216	6.26674183478555	6.32678678480884	6.10108487301529	6.02448513580339	0.341949983869748	0.146199148115879	0.426226056266237
Merged-chr7-132610659-4	chr7	132610563	132610763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029609)	promoter-TSS (NM_029609)	20.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	6.75785859691684	7.36280189251069	7.35390094941541	6.80479343479989	6.87686897443528	7.23259895750532	6.93358514546065	6.84234554023435	-0.164216629704433	0.487745744438671	0.761057402147961
Merged-chr7-55855797-4	chr7	55855688	55855888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	intron (NM_001164661, intron 2 of 31)	13717.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	6.99034513468365	7.12605750315245	7.22808191462708	7.11265480724551	6.50241000178131	6.60068119032614	7.16078309817879	6.67923648521684	-0.501785989412811	0.0249075179323567	0.148086553533847
Merged-chr11-6560642-2	chr11	6560542	6560742	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190344, intron 1 of 9)	intron (NM_001190344, intron 1 of 9)	459.0	NM_001190344	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	3.13627261565365	2.92315259764372	3.24287386700448	3.14220203976247	3.08829954063865	2.8578244226942	2.81721229641234	3.07844709512089	-0.599580416193586	0.322842111103611	0.63430436751253
Merged-chr19-57404323-4	chr19	57404233	57404433	+	943.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43324.0	NM_145505	226252.0	Mm.358870	NM_145505	ENSMUSG00000033478	Fam160b1	AI450540|mKIAA1600	family with sequence similarity 160, member B1	protein-coding	4.58251915365861	4.72977698969498	4.98472753057954	4.97599626236788	4.7088509337392	4.67180857404922	4.72203552250968	4.66328863834616	-0.308267520935034	0.369576041291957	0.673760732747822
Merged-chr6-70804801-4	chr6	70804683	70804883	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12608.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	4.72967163958269	4.6925932657031	4.73043439936476	4.68996260089379	4.85627539822934	4.94184167580431	4.78339834396604	4.97450074686532	0.372233440337056	0.249284795225956	0.560328612484111
Merged-chr19-6980058-4	chr19	6979981	6980181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360288)	promoter-TSS (NM_001360288)	5.0	NM_001360286	14227.0	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	8.92440700982331	9.26743059089091	8.98442525168114	8.76428490397856	9.02577031111393	9.24911478806473	9.01058903446659	8.81864338223916	0.0476562216357682	0.785409842732412	0.916479414030825
Merged-chr4-130802958-4	chr4	130802806	130803006	+	786.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	10369.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	3.1024655483634	3.06333068413517	3.03860521646021	3.18860816094143	3.41290925261407	3.21178235193481	3.37067833242305	3.38274335742518	0.909469615240318	0.0928092267519764	0.333351935831922
Merged-chr10-117432638-4	chr10	117432528	117432728	+	981.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14807.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	5.12909542606628	4.84079551394957	5.00922923975899	4.66491488757751	4.84995455979882	4.77393881105723	4.66133939504291	4.94025224869045	-0.191522324347616	0.576607989927606	0.813620450127494
Merged-chr2-91080337-3	chr2	91080217	91080417	+	826.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-10002.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	3.38424652844929	3.4445530664845	3.2049434664984	3.09975965856081	3.4071536061069	3.49969678447437	3.25596943730519	3.58884866349625	0.566407068840562	0.2850245032411	0.596804115908638
Merged-chr4-148038999-4	chr4	148038892	148039092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010840)	promoter-TSS (NM_010840)	-85.0	NM_010840	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	8.67453973690951	8.8492916980936	8.73751001410888	8.63569905063679	8.94833623452574	9.29444530844109	9.09143438373025	8.86613654793553	0.414440850673536	0.0097891158223086	0.0777067287354618
Merged-chr3-136086625-4	chr3	136086538	136086738	+	889.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 10 of 16)	intron (NM_001033350, intron 10 of 16)	239428.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	5.12695329987634	4.28294676732063	4.93597069942994	4.83188377835683	4.19031066668801	4.26550633590754	4.06322658782283	4.23924640186537	-1.46366256040348	0.000460023329990014	0.00721551357544275
Merged-chr5-97126182-1	chr5	97126082	97126282	+	652.0	f0_balb.idr	Intergenic	Intergenic	-14586.0	NM_001359913	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	3.18977783445042	3.36738913874611	2.99471157969271	3.41892408082801	3.08241782095552	3.23830230812471	3.39788303639591	3.35829198886646	0.0302205691768016	0.957623729426247	0.984867785534328
Merged-chr9-36767806-4	chr9	36767707	36767907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008408)	promoter-TSS (NM_008408)	-229.0	NM_008408	16430.0	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	9.75582273852626	9.91936688663363	9.84972544422756	9.87574624311263	9.6939618448463	9.75886451253876	9.80096908115561	9.57782417865857	-0.173479051884291	0.195771511902344	0.496661098681147
Merged-chr15-103366118-1	chr15	103366018	103366218	+	841.0	f0_balb.idr	intron (NM_001314041, intron 1 of 30)	CpG	673.0	NM_010577	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	3.13263263528109	3.81937584829032	3.96956687789274	2.92870287147142	3.63695986268311	3.45302441843786	3.38370246487528	3.33372305995689	-0.270121135966166	0.672339153122432	0.865119100634158
Merged-chr9-20868741-4	chr9	20868650	20868850	+	958.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175687, exon 1 of 8)	5' UTR (NM_175687, exon 1 of 8)	108.0	NM_175687	319278.0	Mm.249932	NM_175687	ENSMUSG00000038884	A230050P20Rik	RyDEN	RIKEN cDNA A230050P20 gene	protein-coding	5.33258998193584	4.76338062677354	4.86903011289346	5.28999369161924	5.15805085306413	5.12340480353636	5.16075206703163	5.43606144816208	0.233194808734484	0.480421143194339	0.755947743876719
Merged-chr7-127873210-4	chr7	127873102	127873302	+	856.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362192, intron 2 of 4)	intron (NM_001362192, intron 2 of 4)	2440.0	NM_001362192	244219.0	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	4.1738617692792	4.14933948966443	4.08468411069922	4.25248577266469	4.09181571572798	3.94843076936167	3.81370752806321	4.08222680459168	-0.471184432188376	0.260283592746013	0.572042049219392
Merged-chr6-89289431-4	chr6	89289308	89289508	+	992.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-3683.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	4.89261297692564	5.22019136619005	5.23505922213142	4.42273635119092	5.24889085370495	5.3161347782259	5.26695247427821	5.31816249543121	0.605711799214128	0.0854240565834577	0.318212210778414
Merged-chr15-99139773-2	chr15	99139673	99139873	+	924.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_139140, intron 1 of 12)	intron (NM_139140, intron 1 of 12)	12928.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	2.84401372367748	2.8884572978687	2.914185846847	2.96914507021612	3.22797395560711	3.4361201197079	3.03305398225711	3.21550044688357	1.28996505882685	0.026481256831329	0.154399523263201
Merged-chr7-120835905-2	chr7	120835806	120836006	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-6925.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	5.70394675355693	6.1393483467698	5.52520871582556	5.47734620850454	6.49525892807779	6.28614309765069	6.2664679006647	6.6307505254938	1.08184313199058	5.82131264828669e-05	0.00128841795084701
Merged-chr11-84880699-4	chr11	84880606	84880806	+	984.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077636)	promoter-TSS (NM_001077636)	-421.0	NM_001077636	70325.0	Mm.390414	NM_027388	ENSMUSG00000045140	Pigw	2610044A17Rik|Gwt1	phosphatidylinositol glycan anchor biosynthesis, class W	protein-coding	5.26649076776778	5.56030655541415	4.93610682306575	4.98532003183749	5.05438121633686	5.18545346432907	4.66614506391882	5.32065551174593	-0.244988214794949	0.485072715216157	0.759068522102864
Merged-chr10-120189961-4	chr10	120189855	120190055	+	686.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 1 of 11)	intron (NM_001359184, intron 1 of 11)	11642.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	3.85620622425248	3.65945976715463	3.64214884243044	3.48516435594756	3.77823885915813	3.81942847810173	4.02201219834864	4.16009792923877	0.863026934362286	0.0609985043420996	0.260988972142721
Merged-chr8-104111354-3	chr8	104111251	104111451	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 1 of 11)	intron (NM_009868, intron 1 of 11)	-5478.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	5.58235263127999	6.55729118809752	6.49389174262122	6.40737476394789	6.56002916039465	6.25193535079871	6.8351046424242	6.35199320044856	0.298083210638937	0.304642431036287	0.617166460757987
Merged-chr11-60116143-3	chr11	60116026	60116226	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009021, intron 1 of 5)	PB1D10|SINE|Alu	11113.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	4.08949359135665	4.08585583103115	3.70848548867086	4.21316692998038	3.44316405583399	3.51411379871284	3.94243053850594	3.52890564230623	-1.26846828903186	0.011809271239371	0.0888630455152787
Merged-chr2-32496338-4	chr2	32496242	32496442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39017.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	6.65905041088155	6.5921713394809	7.08656111741541	7.30163566179947	6.72085677602276	6.53663137206838	7.02812632060913	6.8463403604676	-0.226516869736233	0.363335475377309	0.668503886726201
Merged-chr5-103629634-4	chr5	103629550	103629750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029415)	promoter-TSS (NM_029415)	-247.0	NM_029415	75750.0	Mm.7446	NM_029415	ENSMUSG00000029321	Slc10a6	8430417G17Rik|C78479|Soat	solute carrier family 10 (sodium/bile acid cotransporter family), member 6	protein-coding	6.46611730351537	6.14422902676387	6.66472345191489	6.84529886859736	6.1326078991422	6.28567452901784	6.09815966564223	6.16739507620048	-0.594556599353291	0.0174742521610022	0.116825652077433
Merged-chr7-83802154-4	chr7	83802048	83802248	+	866.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7309.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	4.70295171098579	4.18916477167217	4.37271042922488	4.47579940135915	4.10638414116055	4.21712230305119	4.1742622312441	4.32717639748858	-0.589113851853762	0.139546855655048	0.41537262738555
Merged-chr7-121706757-4	chr7	121706587	121706787	+	783.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033173, exon 1 of 16)	exon (NM_001033173, exon 1 of 16)	566.0	NM_001033173	76179.0	Mm.122538	NM_001033173	ENSMUSG00000063317	Usp31	6330567E21Rik|mKIAA1203	ubiquitin specific peptidase 31	protein-coding	3.33646234843829	3.43657830594497	3.39856612059194	3.50765282167963	3.82024246673862	3.68430256870875	3.6048985102007	3.51205378434028	0.760493410121474	0.121488551532107	0.386028909847947
Merged-chr4-119105908-4	chr4	119105815	119106015	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2830.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	5.29709615949205	4.88665241793018	5.05315446382512	4.7795816645332	5.11111843989819	5.04898450257296	5.29868499060492	5.08301148729134	0.266392455566129	0.407930405666377	0.704075086986739
Merged-chr13-116957833-4	chr13	116957735	116957935	+	836.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	67681.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	4.18187396265968	3.83970279034438	4.13665343125417	4.52127698179646	4.51108284125874	4.0012683830917	4.11876499396144	3.93284263395018	-0.083535856780317	0.858264975372357	0.946576014812915
Merged-chr16-93691394-2	chr16	93691250	93691450	+	800.0	f0_balb.idr|f1_balb.idr	TTS (NM_173047)	TTS (NM_173047)	8131.0	NM_173047	109857.0	Mm.4512	NM_173047	ENSMUSG00000022947	Cbr3	1110001J05Rik|C81353	carbonyl reductase 3	protein-coding	3.21627812332703	3.04852069278278	3.16237099262507	3.01876670538985	3.14202531442679	2.95645829015297	2.84195344720101	3.16063433921319	-0.293318105869923	0.617484283084134	0.835587714556
Merged-chr8-115600020-4	chr8	115599912	115600112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106882.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	6.18936465965538	5.75807410645964	6.48641705680095	6.66104969974451	5.73901904350705	6.08396439525855	6.45308863192172	6.04063607216709	-0.347052536783286	0.2487863348521	0.560019054692692
Merged-chr9-109200548-3	chr9	109200459	109200659	+	858.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4584.0	NM_177598	211305.0	Mm.225242	NM_177598	ENSMUSG00000049314	Fbxw13	E330017E16	F-box and WD-40 domain protein 13	protein-coding	3.7140547633739	3.77338313877215	3.71454670700625	3.51145342432883	4.14887388926112	4.05277779699832	4.21527479197764	4.15267188944001	1.33868605783028	0.00176847259950833	0.0212610245012111
Merged-chr14-51219312-1	chr14	51219212	51219412	+	579.0	f0_balb.idr	Intergenic	MLTR25A|LTR|ERVK	15617.0	NM_017389	503847.0	Mm.377124	NM_017389	ENSMUSG00000050766	Ear14	-	eosinophil-associated, ribonuclease A family, member 14	protein-coding	2.69060432005728	2.58726135960381	2.57315190302945	2.76488719331386	2.12853045059406	2.23841378578875	2.50126883477424	2.3724102533808	-2.22412811501633	0.00931803829695522	0.0750523655443597
Merged-chr9-100570121-4	chr9	100570009	100570209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101483, intron 1 of 1)	intron (NM_001101483, intron 1 of 1)	976.0	NM_001101483	245020.0	Mm.236289	NM_001101483	ENSMUSG00000070287	Slc35g2	Gm519|Tmem22	solute carrier family 35, member G2	protein-coding	5.88380058253826	5.99444002832135	6.25872577272381	6.47492047866195	6.08698004921802	5.5037360850959	6.43951105887576	5.80608343881033	-0.268857631297367	0.374854875659468	0.677970849710238
Merged-chr9-42083882-2	chr9	42083782	42083982	+	587.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011436, intron 5 of 47)	intron (NM_011436, intron 5 of 47)	-6669.0	NM_001357261	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	3.4474624006188	3.484314994019	3.44789502149698	3.37118445991225	3.60188544847073	3.62589126132494	3.80287593859083	4.1048031791015	1.13231850036688	0.0200774952105573	0.128377293531464
Merged-chr6-115317161-4	chr6	115317077	115317277	+	900.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43774.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	4.30133369415983	3.79574623418738	4.65895851534432	5.09231065195529	4.22014611003198	4.23303392691254	3.97880165695017	4.5095011999052	-0.713455587692871	0.15806569976705	0.444930535204605
Merged-chr6-83795771-4	chr6	83795660	83795860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164187, intron 1 of 9)	intron (NM_001164187, intron 1 of 9)	602.0	NM_001164187	56174.0	Mm.190650	NM_019542	ENSMUSG00000034744	Nagk	Gnk	N-acetylglucosamine kinase	protein-coding	5.68234240473939	5.66354709272115	5.31964021713596	5.61925516292337	5.57636879161058	5.43139726667922	5.47297840360195	5.72697836312919	-0.0427221752944901	0.875814282639359	0.953343358207453
Merged-chr12-55474829-1	chr12	55474729	55474929	+	656.333313	f0_balb.idr	Intergenic	Intergenic	17818.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	3.57906637638464	3.39503886662201	3.4777353471405	3.45177932126624	3.32393012270544	3.4805347825431	3.2353933872577	3.36532538893911	-0.431657594783511	0.399048491758647	0.697130193277262
Merged-chr13-45266420-4	chr13	45266309	45266509	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-123333.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	5.78573678071376	5.55437814423016	5.3690292229097	5.74578545200906	5.2709280259393	5.71640384340183	5.5408880040711	5.26914100595815	-0.305873453834116	0.292233888844743	0.604625061014445
Merged-chr17-17866760-4	chr17	17866655	17866855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-11567.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	6.74736127051797	7.09977515660154	6.64242270047184	5.76846614873186	7.31207419436581	7.21004242530686	6.9978224742364	6.14160356357561	0.464100752765945	0.357115206781649	0.663337768880768
Merged-chr3-41452239-3	chr3	41452127	41452327	+	672.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR37B|LTR|ERV1	40972.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	3.07529634156666	2.85956765385115	2.91168559290176	3.2778443127342	2.69497188639632	2.60696725049451	2.57504420976898	2.58024796997262	-2.1984026149241	0.00265446463942256	0.0290546114976869
Merged-chr1-139037318-4	chr1	139037221	139037421	+	899.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166501, intron 3 of 21)	intron (NM_001166501, intron 3 of 21)	59664.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	4.83561435620498	4.55578741602787	4.47615300517468	5.09332776370728	5.17952232995875	4.46039690394211	4.54469964294016	4.64581459881216	-0.0454270346522231	0.911436949970106	0.96695373445261
Merged-chr1-61690861-3	chr1	61690776	61690976	+	810.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081050, intron 1 of 22)	MIR|SINE|MIR	52052.0	NM_001081050	72823.0	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	4.14470270898332	3.81374437586882	4.03273661799133	4.01455993990261	3.22392965455066	3.20365279098623	3.22938074389097	3.16438266397685	-2.9585462551984	9.72155662174912e-07	3.41713915446657e-05
Merged-chr19-56591600-2	chr19	56591500	56591700	+	706.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025811, exon 7 of 11)	exon (NM_025811, exon 7 of 11)	43339.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	2.85397300470792	2.95496498208442	3.12776918788286	2.96707907216518	2.73452783788276	2.52771547615776	2.64976570734697	2.79047834880876	-1.44158715721751	0.0333838502129953	0.179677056658661
Merged-chr17-28429013-4	chr17	28428908	28429108	+	844.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 4 of 10)	intron (NM_010220, intron 4 of 10)	57141.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	3.71491944749606	4.09766877001861	3.98328365692097	4.43240558421178	4.04284723090798	3.7727502701641	4.01344494455985	3.88044253725861	-0.443793235153339	0.348268734802889	0.65615193950595
Merged-chr6-127251928-4	chr6	127251827	127252027	+	748.837524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56040.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	4.52932339120362	4.22756767152225	4.03168124235855	3.90683080548072	4.00764343275945	3.99274903300744	4.15724913677289	4.30256367329934	-0.165435580022839	0.706168410435623	0.88190826013505
Merged-chr2-120425028-4	chr2	120424939	120425139	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172672, intron 6 of 23)	intron (NM_172672, intron 6 of 23)	-20923.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	5.24668136465683	5.43964709767619	5.24757503105932	5.20064928971291	5.27127430083067	4.98914986143599	5.25216298988547	5.49619841503862	-0.0284815711342075	0.924067104906479	0.971898050418734
Merged-chr4-87652434-4	chr4	87652330	87652530	+	876.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153893.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	4.4928016327268	4.46033412824151	4.53124586330834	4.43476717369241	4.50196550148505	4.31927895526507	3.96751179549821	3.86257101201899	-0.661153539162465	0.121152346326037	0.385390724845415
Merged-chr7-19665025-4	chr7	19664929	19665129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019649)	promoter-TSS (NM_019649)	1.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	6.49719715433775	6.97030834226139	6.29556497481194	6.43903311700053	6.83792035590806	6.80372146500766	6.48193998541102	6.42370857825981	0.112279614169984	0.651668149417353	0.854111497521134
Merged-chr8-117569618-2	chr8	117569518	117569718	+	730.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 7 of 32)	intron (NM_172285, intron 7 of 32)	71343.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	3.48439965253403	3.15165593088274	3.18664030561123	3.54827058116812	3.36069953014872	3.60064852074977	3.41707565189569	3.63328465329609	0.467608483049825	0.386099640547014	0.687471231171812
Merged-chr5-24750870-4	chr5	24750766	24750966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153076)	TTS (NM_153076)	6977.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	6.17495798228675	6.39201119420983	6.19726579728013	6.58221953238411	6.70305024845468	6.62120386535271	6.8320810350424	6.36924741645041	0.406851122208758	0.0836850175072252	0.314499253492438
Merged-chr7-80837932-4	chr7	80837831	80838031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24177.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	5.88202260508405	5.73283627568108	6.19649313785382	6.49038060035653	5.92484611204953	5.64807448319392	6.10825797258847	5.92540621174842	-0.334037626493289	0.2457735403792	0.556935940614787
Merged-chr6-83322133-4	chr6	83322028	83322228	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-3911.0	NM_145571	232157.0	Mm.29500	NM_145571	ENSMUSG00000043131	Mob1a	4022402H07Rik|MOB1|MOB4B|Mobk1b|Mobkl1b	MOB kinase activator 1A	protein-coding	4.88209152692034	5.71719570739237	5.67503825191154	5.20812707037801	5.72959066360857	5.22770899312351	5.75797206793895	5.25598427894098	0.19517571468499	0.572437441418312	0.811251013052168
Merged-chr2-18952243-3	chr2	18952143	18952343	+	864.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	45878.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	4.18482167823921	3.930816280944	4.01594499219833	4.14855744416612	3.75497054526917	3.70769412330664	3.99815921296506	3.45653392245864	-0.945469514004343	0.0446159485423352	0.215679871799309
Merged-chr10-128036095-3	chr10	128035994	128036194	+	953.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013608, intron 1 of 7)	CpG	748.0	NM_001113199	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	4.10801902324526	4.57085735249354	4.46743174968644	4.58604033338957	4.64670295201494	4.72923097172417	4.9839030459946	4.94556353256089	0.789751737560032	0.0342330135346837	0.182782362192277
Merged-chr1-86531077-3	chr1	86530983	86531183	+	912.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360831)	TTS (NM_001360831)	4526.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	3.00034917912951	2.54815532876733	2.4761673734633	2.16541502642853	2.78744476780492	3.00160748279475	2.87536306989551	2.82555055101077	1.34361811357334	0.0904794342302037	0.328566687876724
Merged-chr11-72538341-4	chr11	72538270	72538470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029932, exon 5 of 12)	exon (NM_029932, exon 5 of 12)	11876.0	NM_029932	77577.0	Mm.46185	NM_029932	ENSMUSG00000020798	Spns3	9830002I17Rik	spinster homolog 3	protein-coding	6.89445351022623	7.25430892021863	7.00905870171321	6.85750046859627	6.8347055620922	6.87318862449137	6.70717241960481	6.45396476118622	-0.391980848983142	0.0699252482291725	0.283004304313503
Merged-chr9-108848374-4	chr9	108848285	108848485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359572, intron 34 of 35)	intron (NM_001359572, intron 34 of 35)	-5658.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	6.82688685138109	7.6890085682734	7.59380148880301	6.56780676437577	7.29616557190803	7.34236251767237	7.35608880633721	6.59640674810775	-0.0955881292921995	0.753104296576344	0.902748580768063
Merged-chr7-141363649-4	chr7	141363590	141363790	+	795.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133191)	TTS (NM_133191)	1420.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	3.66637044048707	3.43027470732465	3.61837580103928	3.21235660579969	3.32360570663254	3.39476441409059	3.55291014983151	3.51331186238123	-0.118054017487274	0.822497991963386	0.932143478460956
Merged-chr4-32055365-4	chr4	32055317	32055517	+	962.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91310.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	5.09961976874528	5.22779283912054	5.32117524398266	5.51977402215481	5.40502157753	5.27572267038596	5.10950734756796	4.91254438835398	-0.216316570045885	0.49311192793293	0.764006310666681
Merged-chr18-4908344-4	chr18	4908240	4908440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95854.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	6.6008777910287	5.74855668501988	6.95766419314665	6.68517482932002	5.58958758615664	5.61149119780278	6.1913191409218	5.89280319077824	-1.10833339613766	0.000582795754605219	0.0087313868695106
Merged-chr8-83997036-4	chr8	83996935	83997135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081415)	promoter-TSS (NM_001081415)	-637.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	7.69551998256026	7.33186841283311	7.45828371762384	7.30726010198586	7.77920242474861	7.84961487158403	7.64306934961291	7.66721071941431	0.382859602553863	0.0348913153437543	0.184896436484
Merged-chr18-32856880-3	chr18	32856774	32856974	+	816.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110015, intron 16 of 22)	intron (NM_001110015, intron 16 of 22)	-19587.0	NR_045381	75795.0	Mm.382634	NR_045381	ENSMUSG00000097553	4930455D15Rik	-	RIKEN cDNA 4930455D15 gene	ncRNA	3.5363254167644	3.70805176192063	3.48088723772054	3.87278626467199	3.6278049760591	3.26944050626704	3.46809970931155	3.58837412291629	-0.544475265872172	0.294069981790077	0.606446191202461
Merged-chr2-12318902-3	chr2	12318824	12319024	+	967.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16980.0	NM_001001309	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	3.92659061091911	3.37760384520124	4.1027819233632	4.10800776958441	3.97128323438172	3.7261354150771	3.65325322677377	3.82708758023005	-0.313904374998782	0.539182174992282	0.791983989773924
Merged-chr1-87824624-4	chr1	87824525	87824725	+	903.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009118, intron 9 of 15)	intron (NM_009118, intron 9 of 15)	20945.0	NM_009118	20215.0	Mm.1276	NM_009118	ENSMUSG00000056055	Sag	A930001K18Rik|Arr1|Irbp|arrestin	S-antigen, retina and pineal gland (arrestin)	protein-coding	4.33655470867529	4.30495330683944	4.38010105238226	4.3636434807409	3.94130385421194	4.32638850790603	4.40114897920824	4.60751664835974	-0.036679447332913	0.92811296610595	0.973863292981759
Merged-chr4-57953046-4	chr4	57952964	57953164	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 1 of 4)	intron (NM_011660, intron 1 of 4)	3347.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	5.09756875418924	5.58910253483334	4.35407405488036	4.42484764179514	5.26932265067519	5.71728733121852	5.0730151829797	5.22232121210762	0.682351680277158	0.116143042153495	0.377075323577067
Merged-chr8-86880378-3	chr8	86880276	86880476	+	823.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	4882.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	4.0508149513255	4.3386697174289	4.05142311737168	3.89848005809756	3.88463073276036	4.17548964444863	3.88627819107982	3.89985684614008	-0.337861275856114	0.441185254221754	0.728396857622944
Merged-chr5-29290274-4	chr5	29290185	29290385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020295, intron 8 of 16)	intron (NM_020295, intron 8 of 16)	88105.0	NM_020295	56873.0	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	5.01509451488868	4.99088988326619	4.711145833189	4.57349654553972	5.10861285903613	5.22245069039198	5.17861967741732	5.17151119654272	0.683803224055078	0.0340480773010797	0.182136486864088
Merged-chr17-31018467-4	chr17	31018372	31018572	+	857.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39222.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	4.04120207378296	4.34503040354253	4.13536325323985	4.00776290015501	4.0485625920487	3.89379926434227	4.24426132877266	3.93867733343849	-0.246135756444945	0.563226168592339	0.806187480040249
Merged-chr15-54780897-2	chr15	54780797	54780997	+	824.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34969.0	NM_010930	18133.0	Mm.5167	NM_010930	ENSMUSG00000037362	Nov	C130088N23Rik|CCN3	nephroblastoma overexpressed gene	protein-coding	3.1269995411491	3.36458674576613	3.26124289847603	3.59896974298466	3.3380514672396	3.49754854507893	3.48035079741442	3.8189803429467	0.5955961438725	0.285092259071038	0.596866661479153
Merged-chr7-68094000-3	chr7	68093907	68094107	+	834.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	141750.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	3.34122251167486	3.42726211373991	3.61231257927174	3.84408212852971	3.29009143772147	3.25789692807229	3.44351025854156	3.4549782616256	-0.756899483283432	0.159412487295805	0.446951602987166
Merged-chr7-13278733-4	chr7	13278634	13278834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010715)	promoter-TSS (NM_010715)	-13.0	NM_177312	321008.0	Mm.458832	NM_177312	ENSMUSG00000070814	Zswim9	6330408A02Rik	zinc finger SWIM-type containing 9	protein-coding	7.83742186396348	7.8751330093016	8.03399566514728	7.83722970369589	7.87124823687001	7.93823591170158	7.97621813686397	7.72321368758571	-0.0192544251520545	0.906965601303044	0.965481261274948
Merged-chr14-73106535-4	chr14	73106441	73106641	+	830.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35969.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	4.28969055659653	3.89804530436896	4.05660631444215	3.87828863983314	4.73574421861879	4.50325491213683	3.87826879576007	4.24417471764369	0.873755189426563	0.0523218808018656	0.238258534552875
Merged-chr9-118610242-4	chr9	118610113	118610313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	3504.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.33831385712756	6.03004270420496	5.70668221331484	5.64514052627737	5.55530744324312	5.48213830772268	5.92162882815549	5.70264484887553	-0.0518345797431546	0.858984627194118	0.946576014812915
Merged-chr2-83625826-4	chr2	83625723	83625923	+	911.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18755.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	4.60868418995888	4.74000915083934	4.64690947954683	4.63530981551862	4.35912306945953	4.22980200214846	4.42738396349319	4.48698237562721	-0.634405559214967	0.0800876517175226	0.306561257936233
Merged-chr5-31049481-4	chr5	31049343	31049543	+	855.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177621)	promoter-TSS (NM_001177621)	-519.0	NM_001177622	330064.0	Mm.205463	NM_177870	ENSMUSG00000006641	Slc5a6	E430023I20	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	protein-coding	4.14502848890382	3.89187507710863	3.96960428420091	3.7797336197515	3.69464504667002	4.09266133676283	3.75053776910438	3.86922189488948	-0.253320825071957	0.577521601465575	0.814166268489505
Merged-chr15-50826341-4	chr15	50826248	50826448	+	996.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 3 of 5)	L1MEg|LINE|L1	62701.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	5.60677645913318	5.38934705300953	5.24189222578353	5.89817239633887	5.40593661984853	5.20946527698085	5.27930186510005	5.10091782875677	-0.561342757620474	0.073663712727763	0.292391705870387
Merged-chr7-118522243-4	chr7	118522129	118522329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304758, intron 5 of 6)	ORR1E|LTR|ERVL-MaLR	11127.0	NM_001304758	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	6.2246021455913	6.64453923142274	6.46623400820056	6.7229585770514	6.17143447475537	6.31956048719334	6.60512001358906	6.41007305301396	-0.238794086783683	0.316373955315497	0.62832538407929
Merged-chr17-34239892-4	chr17	34239810	34240010	+	993.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010389, intron 1 of 5)	intron (NM_010389, intron 1 of 5)	1005.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	5.00074789219288	5.34812866600706	5.29507770275498	4.97734419277785	6.2109966564415	5.53766532448041	5.9191341230045	5.82207655754141	1.28497526250476	1.44487837991157e-05	0.000383655659497503
Merged-chr15-80219406-4	chr15	80219287	80219487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14693.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	6.09003145473669	6.45747692146954	5.72379125971729	5.7683523967275	6.52590318639018	6.55052535646149	6.35976123773748	5.9986784140021	0.515782243704605	0.0664299554924967	0.274700389356906
Merged-chr13-114964384-4	chr13	114964244	114964444	+	970.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033228, intron 28 of 28)	intron (NM_001033228, intron 28 of 28)	-32244.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	3.90615387739719	3.85844395967769	4.24158225975249	4.18275948027055	4.30537602466387	4.08282326917739	3.99492955595285	4.32021851173564	0.314907181452916	0.45989632391778	0.742271214480192
Merged-chr5-125475816-4	chr5	125475745	125475945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030210)	promoter-TSS (NM_030210)	-28.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	6.45658047978002	6.42118152112104	5.92711268941877	6.10692221452153	6.75968193272876	6.5650338376612	6.45736359448712	6.27442020600745	0.434101606097234	0.0784840233333922	0.303220863572603
Merged-chr10-99265501-4	chr10	99265400	99265600	+	996.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026268, intron 2 of 2)	intron (NM_026268, intron 2 of 2)	2269.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	5.01248993144759	4.97253931793121	5.32610028065547	5.1857700498364	5.12131077725866	5.11641229628333	5.24321921896516	5.04489870712858	-0.00202843590951956	0.994676404871181	0.99809702625617
Merged-chr4-43267135-4	chr4	43267015	43267215	+	826.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177195)	promoter-TSS (NM_177195)	-44.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	3.92263579612112	4.4176641255368	3.81777499521104	4.06885351835603	3.93653773137486	3.6283342691107	3.95601980592718	4.06426544068411	-0.467317972631932	0.316487267459063	0.628459551030229
Merged-chr10-127635252-4	chr10	127635149	127635349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-7737.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	6.91996692944663	7.55285475052289	7.30059410321994	6.98899361877735	6.86256329603431	6.89580270449201	6.97639347525453	6.80405461662711	-0.451017960093125	0.0408507432321214	0.204367281251642
Merged-chr17-47884973-1	chr17	47884873	47885073	+	624.0	f1_c57bl6.idr	intron (NM_028767, intron 3 of 16)	ID_B1|SINE|B4	39659.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	2.93380992472938	3.00665964499004	3.14237186791592	3.00993322321646	2.49256175612512	2.48292136868677	2.60753116044735	2.53974613037395	-2.85986760466428	0.000323500305141191	0.00539386934168302
Merged-chr8-66862557-4	chr8	66862479	66862679	+	854.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163564, intron 1 of 7)	intron (NM_001163564, intron 1 of 7)	2362.0	NM_001163564	234344.0	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	3.89278531276641	4.23146250584263	4.09804092881035	3.82453623894454	3.83764633288098	4.36045075686886	4.12607800883609	4.38984356889975	0.450889329813943	0.309326805301473	0.621622697166796
Merged-chr4-34959663-4	chr4	34959546	34959746	+	928.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 3 of 3)	intron (NM_178061, intron 3 of 3)	-48165.0	NR_040652	73696.0	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	3.80093173060437	4.0939771964547	4.23932342881957	4.29429267498086	3.5735869769865	3.80163684910118	4.09087281639088	4.42705692571447	-0.297648524046776	0.547790628022557	0.797027776266171
Merged-chr8-109693369-4	chr8	109693275	109693475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028018)	promoter-TSS (NM_028018)	-81.0	NM_001361562	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	7.83150991053579	7.88211809313529	7.64447350715539	7.75633365387828	7.99518791472219	8.09831918744649	7.98447684205578	7.95733612320393	0.294224973710946	0.0674130247922568	0.277091395258304
Merged-chr7-143748614-3	chr7	143748526	143748726	+	834.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6663.0	NM_024289	79196.0	Mm.21199	NM_024289	ENSMUSG00000037606	Osbpl5	1110006M06Rik|AI462538|ORP5|Obph1|Osbp2	oxysterol binding protein-like 5	protein-coding	3.22101185095887	3.38093870814172	3.22142492844124	3.186881798535	3.15794354235485	3.27276858651748	3.15115867751577	3.16070564902248	-0.257896407321544	0.632946702972392	0.844280824760539
Merged-chr8-70873613-7	chr8	70873498	70873698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026964)	promoter-TSS (NM_026964)	-108.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	5.5733192415007	5.61862375488384	5.52017358725773	5.14630643995204	5.66461779011778	5.96480195319947	5.31605169999214	5.54360910324813	0.307394442672866	0.309124735597551	0.621523912634826
Merged-chr3-97995013-4	chr3	97994889	97995089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18549.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	6.35253019495184	6.11564581769626	6.75316925599378	6.64141186656816	5.89964502288366	5.86070071517236	6.28577880787673	5.84097806084902	-0.774981213070445	0.00334652831925502	0.0347842493043594
Merged-chr3-97876264-4	chr3	97876169	97876369	+	903.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 1 of 46)	intron (NM_001039376, intron 1 of 46)	12438.0	NM_001289702	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	3.41929185564156	3.99221624894487	4.0739811704032	4.49162512931929	4.29419726994592	3.93615584366264	4.00897346212884	4.24656152567091	0.184247918187777	0.73255412188427	0.894013953802902
Merged-chr12-111182072-4	chr12	111181975	111182175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130987, intron 1 of 3)	intron (NR_130987, intron 1 of 3)	2416.0	NR_130987	78062.0	Mm.427248	NR_130987	ENSMUSG00000083193	4930595D18Rik	-	RIKEN cDNA 4930595D18 gene	ncRNA	5.2106273116397	6.15390866613338	5.2481740746903	5.28099453053665	6.41389523560017	5.77398206497878	6.08147594717394	5.6194922822657	0.768948190731751	0.030048966313503	0.16744734286564
Merged-chr1-152616235-4	chr1	152616148	152616348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	(TTTTG)n|Simple_repeat|Simple_repeat	8969.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.9276965194858	5.96581897727012	5.49980120461216	5.49697898675911	5.95620244861404	5.8697627761531	5.55873809305398	5.83596342570316	0.141855612933729	0.612727780350416	0.832832725096038
Merged-chr11-29497256-4	chr11	29497154	29497354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176841, intron 25 of 31)	intron (NM_176841, intron 25 of 31)	17779.0	NM_026465	67939.0	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	6.0554698337976	5.73019455751009	6.36118584153929	6.07685276134791	5.91435701126676	5.80357476251915	5.596866793167	5.87841304383611	-0.418667629223595	0.115999057890301	0.376794457243359
Merged-chr7-27332383-3	chr7	27332279	27332479	+	752.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175641, intron 4 of 32)	intron (NM_175641, intron 4 of 32)	1269.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	3.78919999643058	3.31917746650536	3.4938776519587	3.49599477541897	3.41891105848298	3.49212545494198	3.6348686851224	3.43534180025853	-0.115732625035785	0.819659080148906	0.930948039985942
Merged-chr14-76073283-4	chr14	76073158	76073358	+	844.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	37557.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	3.81805932901793	3.42536977230911	3.95903538644755	3.57058216757038	3.60030462697206	3.66248678696102	3.94095966414128	3.99996886821551	0.321441521897871	0.513974073682958	0.776799740756736
Merged-chr11-8664134-12	chr11	8664025	8664225	+	970.4027710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	CpG	410.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	4.92168326114238	4.86829317768457	5.06484975091091	5.11653576471683	5.18100097274782	4.98269518307631	5.19703029597768	5.41149843628325	0.371966399239117	0.231424711180659	0.540953647404949
Merged-chr10-110932006-4	chr10	110931904	110932104	+	683.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007792, exon 2 of 6)	exon (NM_007792, exon 2 of 6)	11828.0	NM_007792	13008.0	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	4.26081079086076	3.92174545080732	4.26148012431842	4.44805741728725	4.03401908032181	4.04928585840352	4.2421225019695	3.92478627770776	-0.463192438727442	0.279744715562772	0.591827681649692
Merged-chr16-18419607-4	chr16	18419506	18419706	+	769.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007744, intron 1 of 4)	B4A|SINE|B4	-6112.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	4.6289336637349	4.31458312556924	5.04287040468421	5.19022914293546	4.42013724489273	4.386002050336	4.72362036551461	4.81525152763294	-0.534953300811626	0.193505415975949	0.493723433138384
Merged-chr11-85574674-4	chr11	85574547	85574747	+	907.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 21 of 25)	intron (NM_138681, intron 21 of 25)	145097.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	4.23969867414488	4.47494847929432	4.37778216252075	4.21201439305809	4.66733745544576	4.67199169622126	4.26909302287658	4.2851678855183	0.394712300780664	0.30799189430086	0.620385291463364
Merged-chr8-52450878-3	chr8	52450784	52450984	+	609.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	94273.0	NR_151738	330767.0	Mm.246790	NR_151738	ENSMUSG00000110013	1190028D05Rik	-	RIKEN cDNA 1190028D05 gene	ncRNA	3.27712715609874	3.10675990727046	3.47494532655473	3.36065346707241	3.03910974897083	2.86620990762245	3.21030943008757	2.83537485683548	-1.26597640847456	0.0401425581213305	0.202227527764948
Merged-chr17-7873885-4	chr17	7873770	7873970	+	877.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52130.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	4.26356501569039	4.22834818155549	4.13117414869324	4.1567228840398	3.92888428734392	4.10592499614944	4.01737766922231	4.34290442952615	-0.237202650636525	0.563802874470165	0.806486928766928
Merged-chr12-85947336-4	chr12	85947210	85947410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 28 of 32)	intron (NM_001347395, intron 28 of 32)	122360.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	7.31480938863321	7.18926120330928	7.21937700714185	7.35628414612032	7.4459571509829	7.32763153814193	7.34000656463807	7.33148693125805	0.119990477818384	0.495364425835822	0.765662949047099
Merged-chr18-23753112-6	chr18	23752973	23753173	+	959.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126066)	promoter-TSS (NR_126066)	-652.0	NM_001162941	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	4.39336834083482	4.12904212779472	4.26017359308445	4.16099907762122	4.34035166971523	4.7226318487705	4.14502091324111	4.69123073118659	0.607224426392508	0.128360929048734	0.398627886471273
Merged-chr5-139405694-4	chr5	139405580	139405780	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177000)	promoter-TSS (NM_177000)	-707.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	5.07589296581229	5.36544958051559	5.8364994635934	5.70559406918359	5.36285366993779	5.18052927686212	5.60148833217601	5.83230850764997	-0.0340448570889548	0.91721922896895	0.969459238985449
Merged-chr12-116077667-4	chr12	116077564	116077764	+	869.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009511)	promoter-TSS (NM_009511)	-62.0	NM_009511	22355.0	Mm.395245	NM_009511	ENSMUSG00000011171	Vipr2	VPAC2|VPAC2R|Vip2	vasoactive intestinal peptide receptor 2	protein-coding	4.05558679788167	3.80758906465516	4.34800129709928	4.17408455841847	3.94281069526513	3.732856374658	4.08414883170697	4.09972950774743	-0.367723187126148	0.409724240660392	0.70525942551561
Merged-chr6-82916062-3	chr6	82915952	82916152	+	632.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308374, intron 11 of 12)	B3|SINE|B2	23717.0	NM_001308374	20355.0	Mm.270543	NM_011350	ENSMUSG00000000627	Sema4f	Sema W	sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	protein-coding	3.33419745411428	3.65053949533084	3.26917233650445	3.35192876248651	3.58165236800456	3.79001678062329	3.60560744997459	3.7172629518225	0.850493636973345	0.0871166104365276	0.321905892865161
Merged-chr11-53859302-4	chr11	53859203	53859403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033332)	promoter-TSS (NR_033332)	-47.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	6.4438153433172	6.12345667799487	6.13289329059149	5.94995498068249	6.38468836152452	6.36976925633189	6.41193595049799	6.10752152795965	0.25341557943218	0.29221403830238	0.604601564802195
Merged-chr13-102663633-3	chr13	102663541	102663741	+	723.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29906.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	2.95109649112678	2.93276867821745	2.87646600915872	2.98390009084529	3.63140443608696	3.55566219416449	3.14320630587954	3.62306188033996	2.1020671527315	0.000358808694650577	0.00587342855629547
Merged-chr16-78635489-3	chr16	78635381	78635581	+	869.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58793.0	NM_025967	67102.0	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	3.82120426404978	3.91988532165565	4.01037344784308	3.62287447927553	3.81888584302004	3.88969287028219	3.70142568808607	3.81953928458966	-0.0876890310578781	0.847832507972263	0.942490405473239
Merged-chr13-99299486-4	chr13	99299457	99299657	+	634.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45121.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	3.58806530584483	3.24779399304833	3.69189848750393	3.34003565917699	3.62742869137156	3.65131526158034	3.46317256539527	3.91578517009848	0.653321704401613	0.199912171727958	0.50185984431534
Merged-chr12-70471557-4	chr12	70471471	70471671	+	970.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	intron (NR_037248, intron 2 of 4)	18417.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	4.97927119227133	5.18193641542696	5.08549407776331	4.88598735692909	5.36238366315893	5.29266075218602	4.88159317874137	5.40695587312895	0.425973460451638	0.176445223529513	0.471494333656464
Merged-chr9-45489610-2	chr9	45489506	45489706	+	589.333374	f0_c57.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	MTD|LTR|ERVL-MaLR	-58374.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	2.25204946392378	2.20550125846423	2.25222152221369	1.9631902544999	2.92242466408895	3.00026448121246	2.81214766682735	2.98823070322932	6.86374409544761	3.61624944739701e-11	2.95863240708358e-09
Merged-chr1-88700504-7	chr1	88700388	88700588	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177305, exon 1 of 1)	3' UTR (NM_177305, exon 1 of 1)	1703.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	4.07807340634889	3.99723953491839	4.21141925978132	3.95648520213274	3.98926258328182	4.15433030003401	4.10642925537115	4.02869201844711	0.0330808374271571	0.936043081144149	0.976815189900882
Merged-chr11-20631444-4	chr11	20631344	20631544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038625)	promoter-TSS (NM_001038625)	-533.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	6.63339117134437	6.93955343062838	6.0997497441768	6.23468142559838	6.68878699833768	6.61653592668227	6.63021125408206	6.32536398147333	0.0859195320885205	0.745413331087207	0.899514909367525
Merged-chr2-6557108-2	chr2	6557008	6557208	+	668.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110231, intron 13 of 15)	intron (NM_001110231, intron 13 of 15)	164554.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	3.33219676061533	3.05599328625418	3.27762317778329	3.95888595358123	3.15544219907558	2.91934737335008	2.88078808829542	3.15839334009425	-1.62075850610842	0.0160617953472035	0.109939660642235
Merged-chr13-5863045-2	chr13	5862945	5863145	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011803, intron 1 of 3)	intron (NM_011803, intron 1 of 3)	1556.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	4.26972810568521	3.92775482107159	3.71092862553139	3.84889439505703	4.27481618612355	4.51830602419518	3.92646152751639	4.22568673637232	0.777731686240376	0.0796278363559371	0.305609436715222
Merged-chr2-166826412-2	chr2	166826312	166826512	+	990.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085495, intron 1 of 38)	MIRb|SINE|MIR	20831.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	3.47987870885117	3.71589537433676	2.95642352632542	3.04664062964095	3.65397957702616	3.48318608214739	3.35437967781212	3.63125211753924	0.668934920263001	0.264922729482003	0.576781318605745
Merged-chr6-31217624-4	chr6	31217452	31217652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	C-rich|Low_complexity|Low_complexity	922.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	5.1060286824398	5.77239353020177	5.50945205253712	5.50312671473643	5.96121701542979	5.50311316003817	5.6924593830345	6.14679779906181	0.590109912143356	0.050152658158054	0.232273801485596
Merged-chr18-82914994-3	chr18	82914912	82915112	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	380.0	NM_001177464	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	4.79061275375568	4.58210306009119	5.12377491824686	4.68532232691494	4.69120208112024	4.88864350591691	5.00809622361331	4.9651265894644	0.178256878453982	0.606407136296147	0.829368409964156
Merged-chr5-100574572-4	chr5	100574472	100574672	+	960.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2367.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	4.75332697347928	4.65056917148413	4.75409926340954	4.51949238939512	5.24114618144508	5.10866106125119	4.97824923279877	4.75097572988424	0.773417298510554	0.0207112375280232	0.131087068825108
Merged-chr4-119320550-4	chr4	119320448	119320648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028677)	promoter-TSS (NM_028677)	-25.0	NM_001110130	66101.0	Mm.304080	NM_028677	ENSMUSG00000060288	Ppih	1100001J08Rik|2010111B15Rik|4833408F11Rik|AI464484|CYP-20|CYPH|D4Wsu43e	peptidyl prolyl isomerase H	protein-coding	6.92379714236084	6.63455240835638	6.47618391665032	6.12039852356155	6.8515269561261	7.1621699093049	6.83868716090018	6.94498975370343	0.565180063757477	0.0211029293886451	0.132657900817307
Merged-chr11-95852410-5	chr11	95852288	95852488	+	908.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6429.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	4.18595954357264	4.37688736345559	4.31880350665704	4.15494962091949	4.31534836244656	4.31198721463769	4.12190454594222	4.08810702891113	-0.0962350854781151	0.80790930641099	0.925935924403888
Merged-chr2-52897239-4	chr2	52897179	52897379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	39411.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	7.22342054660769	6.71943311814693	7.58298072815857	7.28179821636617	7.15609363781117	7.26352716452961	7.24175424741337	7.24125931903731	-0.0158820814939779	0.943349279928348	0.97953264729624
Merged-chr5-105056697-3	chr5	105056573	105056773	+	587.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3112.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	3.42373049225696	3.5138226444121	3.30918730050227	2.77956756456744	3.80236307191951	3.64964593807365	3.03569020713097	3.18177898334176	0.556902153604151	0.391689762477203	0.691351450352092
Merged-chr4-59189338-4	chr4	59189187	59189387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011673)	promoter-TSS (NM_011673)	-263.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	5.8605724809204	6.11450494496026	6.73161252109875	5.97618661368171	5.94832894929892	6.18058342331094	6.1001871428716	6.08608159084816	-0.201485551101258	0.473748513584798	0.751357964537707
Merged-chr4-139575448-4	chr4	139575431	139575631	+	975.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001205173, exon 1 of 9)	exon (NM_001205173, exon 1 of 9)	811.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	3.79431750561132	3.97133343702346	3.67870021051145	3.78945557223459	4.130418698107	4.42904515095389	3.98720073199109	4.40926424582816	1.17429041713474	0.0068922841927447	0.0602093638384112
Merged-chr17-32544950-2	chr17	32544850	32545050	+	758.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_024442, exon 7 of 13)	exon (NM_024442, exon 7 of 13)	8393.0	NM_001356303	70101.0	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	3.32749205226177	3.81793825774956	3.20201696884771	2.72343797179828	3.40996252085261	3.44518575165946	3.5331140592456	3.4410266123215	0.405535819047352	0.526591753246041	0.783803651205536
Merged-chr5-142797866-3	chr5	142797750	142797950	+	811.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178242, intron 2 of 15)	intron (NM_178242, intron 2 of 15)	19537.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	3.51122975958307	3.7406339092523	3.51168235902807	3.48492555098788	4.0688278019835	3.37091868509299	3.49858940326892	3.72223101944999	0.436461536970344	0.403133665463261	0.700638534342803
Merged-chr5-72580584-3	chr5	72580500	72580700	+	974.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_174877, exon 1 of 4)	exon (NM_174877, exon 1 of 4)	484.0	NM_174877	317755.0	Mm.11934	NM_174877	ENSMUSG00000063935	Zar1	-	zygote arrest 1	protein-coding	4.30710484223888	4.22414792841474	4.49316549217499	4.1361285327568	3.70302372950798	4.11655316931129	3.69494244457202	3.98953786177056	-1.10128030448832	0.0139391709237005	0.0996961663161251
Merged-chr5-16470505-3	chr5	16470405	16470605	+	886.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82990.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	3.3802747111752	3.45355929066014	3.82428113436906	3.62296827183071	2.95247010614955	3.49648336153309	3.24638659252052	3.4914485549202	-0.948119275424288	0.100510090858371	0.34801808421501
Merged-chr13-5868336-2	chr13	5868236	5868436	+	765.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011803, exon 4 of 4)	3' UTR (NM_011803, exon 4 of 4)	6847.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	3.45113001919799	3.90421719175163	3.50691899066605	3.06004393880584	3.40968786747304	3.56866435035872	3.32141123719204	3.39204779674593	-0.293845642523693	0.607100911968408	0.829771416202606
Merged-chr10-81290043-2	chr10	81289943	81290143	+	980.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282095, intron 1 of 20)	intron (NM_001282095, intron 1 of 20)	1224.0	NM_013769	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	2.75326090408032	3.17513551531503	2.75350208423029	2.69719014424601	3.4217194090333	3.26448773511569	3.0197184537734	3.30962019569876	1.65850686065544	0.00802175643740408	0.0673246788654623
Merged-chr6-115505138-4	chr6	115505025	115505225	+	976.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39579.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	5.82563096251722	5.27371535921909	5.61228355779927	6.0610110114282	5.7632875471672	4.95312083453437	5.29557572288252	5.77795183490009	-0.394232206304948	0.257483567815474	0.569263018280404
Merged-chr12-117517440-4	chr12	117517338	117517538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 1 of 27)	MLT1B|LTR|ERVL-MaLR	959.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	6.04291102104909	6.43979316644641	6.11249118301773	6.13016345177708	6.69335012612698	6.41714485582494	7.00837046737776	6.58431960276689	0.742890239352581	0.00190741738958856	0.0225416009253734
Merged-chr8-69012803-4	chr8	69012725	69012925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75911.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	7.3283598657267	7.54635439909528	7.75302504640011	7.42030309374422	7.28662499627344	7.51734406354037	7.49552738994492	7.21497079991492	-0.181815102701377	0.342707360035954	0.6516462545027
Merged-chr5-36713349-4	chr5	36713246	36713446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17325.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	6.48401381333642	6.26627102870141	6.46904749622447	6.26577715155241	6.20560727572213	6.27100451221381	6.18681100219201	6.32756709609845	-0.178510476807355	0.421030543270171	0.713655443512669
Merged-chr7-88310947-1	chr7	88310847	88311047	+	700.0	f0_balb.idr	3' UTR (NM_009982, exon 7 of 7)	3' UTR (NM_009982, exon 7 of 7)	32862.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	3.33864449325613	3.34742594240525	3.02280039093859	3.0896839271613	2.52647253663664	2.71289052272711	2.88751248192337	2.75795271662295	-2.40438798861239	0.000904980200774988	0.0124354412569426
Merged-chr18-39489949-4	chr18	39489851	39490051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2706.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	7.63370584905482	7.82377950681071	7.37350062768181	7.32923735832648	7.81745968851705	7.60192503459128	7.82712977656922	7.19024084132246	0.113340739232093	0.605229085985967	0.828724796787318
Merged-chr1-140204043-1	chr1	140203943	140204143	+	574.0	f0_balb.idr	Intergenic	Intergenic	-20632.0	NM_009888	12628.0	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	3.02313822367558	3.01616664620656	3.23945174608907	3.02008542371992	2.63166764288047	2.79693296497586	3.01204040429133	2.96183593464028	-0.985601670266175	0.120723048610581	0.384680506725841
Merged-chr16-94504401-4	chr16	94504327	94504527	+	798.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 4 of 7)	intron (NM_007834, intron 4 of 7)	22202.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	4.34027216661238	4.11913802680839	4.29790868173843	4.77178467625091	4.10298116473529	4.51201660197746	3.75262791845293	4.25071863790002	-0.579451424530104	0.209162461045754	0.513577117801228
Merged-chr10-94476932-4	chr10	94476833	94477033	+	804.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	RLTR20D|LTR|ERVK	-37924.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	4.05424285898863	3.80607790999823	4.10428839128301	4.26972673329833	4.30538994832184	4.27746495085818	4.17934938867485	4.44025854559192	0.547805151409512	0.188995245328177	0.48779670955222
Merged-chr10-119240543-2	chr10	119240451	119240651	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_027994)	promoter-TSS (NM_027994)	-496.0	NM_027994	71902.0	Mm.203965	NM_027994	ENSMUSG00000020114	Cand1	2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829	cullin associated and neddylation disassociated 1	protein-coding	6.89572491406521	7.06942425424105	6.80925388600969	7.23876912389367	7.37435674789582	7.32870579149685	7.48156460241531	7.34844754642678	0.479219484237591	0.0146911597600081	0.103300356386546
Merged-chr9-119322359-4	chr9	119322288	119322488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045693)	promoter-TSS (NR_045693)	39.0	NR_045693	108737.0	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	5.58010819628826	5.93153735996108	6.13092518095687	5.83832290226166	6.60940173809461	6.62583949146097	6.09939701410854	6.16647695287272	0.796966980166147	0.00256637810976594	0.0282905726304832
Merged-chr9-104062947-4	chr9	104062712	104062912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175324)	promoter-TSS (NM_175324)	309.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	3.97849645503564	3.91868479242869	4.17720156347774	3.66551478734767	4.20263209992066	4.51906109134305	4.24625624748458	4.46110207844688	1.10241115135881	0.0090402341219009	0.0733555431558122
Merged-chr1-82924801-4	chr1	82924693	82924893	+	975.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85333.0	NM_001347077	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	5.3307927240013	4.94789256041986	5.41242501940198	5.53171198323355	5.07781847314997	5.04523353768135	5.06226041384433	4.69341286069348	-0.658175272825905	0.0463655639233018	0.221300507912338
Merged-chr7-45454868-12	chr7	45454771	45454971	+	993.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030678, exon 15 of 16)	exon (NM_030678, exon 15 of 16)	5015.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	5.44774481728928	5.6204790779395	5.69449614418641	5.44853692397221	5.8626433006161	5.73934785385452	5.36035402274686	5.97734359007467	0.349790738345707	0.210999359910182	0.515699736944918
Merged-chr4-8803267-4	chr4	8803168	8803368	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 3 of 36)	intron (NM_001355382, intron 3 of 36)	51944.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	5.65005626508928	5.33816142251376	5.57269278061468	5.87806535212172	5.46072083031913	5.34441477696866	5.89270532124408	5.67209384826966	-0.0521370655105057	0.860581092672993	0.947291826627875
Merged-chr5-21138845-5	chr5	21138731	21138931	+	695.719971	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37448.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	3.30175326563323	3.18123770001275	3.77155981450657	3.15365960170963	3.10803339619658	3.09421693018524	2.97406931873999	3.40906476539849	-0.797847943816	0.187229571262224	0.485494122144766
Merged-chr11-80168788-4	chr11	80168730	80168930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 6 of 10)	intron (NM_172133, intron 6 of 10)	14668.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	6.00455104925501	5.88772730962543	6.00561268056284	5.59076042043041	5.84149819924734	5.79370196686377	6.0556158882113	6.04254378607084	0.116546007738992	0.654452428183676	0.855635636382923
Merged-chr18-74268148-4	chr18	74268054	74268254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013594)	promoter-TSS (NM_013594)	-21.0	NM_001357423	17190.0	Mm.22522	NM_013594	ENSMUSG00000024561	Mbd1	Cxxc3|PCM1	methyl-CpG binding domain protein 1	protein-coding	8.34385393246836	8.29401023743391	8.27210112840597	8.52038781241286	8.43459763744241	8.29553052099124	8.50730252927398	8.52242080729983	0.095947161659557	0.542133179927617	0.793675393131794
Merged-chr11-121041402-4	chr11	121041287	121041487	+	727.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1909.0	NM_009854	12516.0	Mm.4100	NM_009854	ENSMUSG00000025163	Cd7	-	CD7 antigen	protein-coding	3.91053765637868	3.75793901261691	3.69879031000016	3.80789523438645	3.88043204857002	4.21777858791306	3.79388103675188	4.00298938404567	0.509637706095655	0.2493268611197	0.560328612484111
Merged-chr1-153953964-4	chr1	153953875	153954075	+	835.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	54046.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	4.42343860020935	4.02040400951402	3.82025231246167	4.01685554790685	3.98918633103384	3.99624272849272	4.00655802101223	3.57783559631459	-0.483172178035343	0.302120177935615	0.614407514345911
Merged-chr18-24215111-4	chr18	24214999	24215199	+	927.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361200, intron 1 of 12)	L1MDa|LINE|L1	9105.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	4.44404807776279	4.36155104177664	4.73406226995485	4.60436558662528	4.39179994863671	4.13914735127282	4.34107209287515	3.95445115072081	-0.753876670453594	0.0624812500012735	0.264678940296097
Merged-chr3-135470145-2	chr3	135470045	135470245	+	712.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15466.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	3.49071319353918	3.20982906578372	3.4911833163389	3.92193284935783	3.31922550162664	3.76634451829202	3.47758546706543	3.37321004738307	-0.245506223415341	0.663253604337878	0.860454250420379
Merged-chr13-102669089-3	chr13	102668980	102669180	+	846.166626	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24467.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	4.01168948441196	3.60674571843554	3.84998004322759	4.16894837071342	4.2690097159718	4.1874250659083	4.41953214988874	4.40124063934844	0.958795068998664	0.0315413038686201	0.173111147202137
Merged-chr1-37622143-4	chr1	37622019	37622219	+	897.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028096, intron 7 of 9)	intron (NM_028096, intron 7 of 9)	-81103.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	3.65246006818253	3.76941240734736	3.82058609743394	4.2182533303241	3.96314960734958	3.82962967018408	4.1241134921248	3.81845070617258	0.101595823605038	0.831622579921939	0.93552984387709
Merged-chr4-116704013-4	chr4	116703913	116704113	+	778.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025962, intron 3 of 3)	B3|SINE|B2	4372.0	NM_025962	67096.0	Mm.252785	NM_025962	ENSMUSG00000028690	Mmachc	1810037K07Rik|CblC	methylmalonic aciduria cblC type, with homocystinuria	protein-coding	3.89140957916682	3.87962301324329	4.04232101718928	3.65366234438262	4.09971730721961	4.30333551215519	4.07059165366847	4.13101709588415	0.794466218935282	0.0619102346004163	0.263228516135418
Merged-chr11-68519559-4	chr11	68519455	68519655	+	981.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004435, intron 1 of 19)	intron (NM_001004435, intron 1 of 19)	16536.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	5.70323538740753	5.78334424979131	4.95026938073352	5.23765739632743	5.42060950568969	5.5423376421088	5.45326995704617	5.06425484454581	-0.132692922103829	0.693157428977887	0.875242026467167
Merged-chr4-137374327-4	chr4	137374237	137374437	+	891.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-16578.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	3.96344567304648	4.38307388085971	4.39881349821532	4.08349162035191	4.78056546413749	3.96855369843848	4.15721382648705	4.62057922068349	0.513042713105331	0.253285826181842	0.564594507760157
Merged-chr4-16119605-4	chr4	16119503	16119703	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44040.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	5.16580623312602	5.02351395634907	5.43736017567827	5.66151502256184	5.27076148485332	5.37483746835238	5.3828784910212	5.09440233690419	-0.144535494709677	0.650776446944777	0.85349283653165
Merged-chr4-108879067-3	chr4	108878946	108879146	+	913.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023537)	promoter-TSS (NM_023537)	-24.0	NM_023537	69908.0	Mm.41580	NM_023537	ENSMUSG00000003411	Rab3b	2610528C18Rik	RAB3B, member RAS oncogene family	protein-coding	3.00184314471888	3.23135872008839	3.00215404897462	2.51524744195287	3.81120530674868	3.76886082548984	4.18945709345058	3.73863358016175	3.65207161400723	4.54607992528162e-08	2.10393643043967e-06
Merged-chr7-110003232-4	chr7	110003086	110003286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037959, intron 2 of 2)	intron (NR_037959, intron 2 of 2)	3460.0	NR_037959	69781.0	Mm.440728	NR_037959	ENSMUSG00000101585	1600010M07Rik	-	RIKEN cDNA 1600010M07 gene	ncRNA	6.29172086101271	6.30577193894221	6.07035204592209	6.46038471802455	6.22154029297944	6.52188687345348	6.3150178122207	6.23128543286209	0.0279777005556218	0.904033788073901	0.964509577932013
Merged-chr3-137880397-4	chr3	137880314	137880514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033155, intron 1 of 7)	intron (NM_001033155, intron 1 of 7)	12739.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	6.01297019469922	5.81637171016412	5.65617449055487	5.35561355212025	5.67897832099744	5.97625449461284	5.49204396138766	5.39530450580452	-0.107890631445431	0.722096749479802	0.889133228349902
Merged-chr7-100862075-3	chr7	100861982	100862182	+	633.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	1331.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	2.40168237076218	2.59104313946836	2.55035119473638	2.39315038079256	2.53102053388453	3.08274687374316	2.67411095212246	2.68282359570569	1.36225431879052	0.0480014708721246	0.226031800423853
Merged-chr15-75704209-4	chr15	75704102	75704302	+	994.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008164)	promoter-TSS (NM_008164)	-86.0	NM_001163465	14787.0	Mm.57052	NM_008164	ENSMUSG00000022580	Rhpn1	BB023497|Grbp|Rhophilin|mKIAA1929	rhophilin, Rho GTPase binding protein 1	protein-coding	5.03851479261065	4.81266134839068	5.19814721405248	4.73496035596847	5.28281306969277	5.24593860406313	5.17226067692097	4.85474576270086	0.409322144721975	0.212720088489906	0.517670706102327
Merged-chr13-22035732-4	chr13	22035621	22035821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175665)	promoter-TSS (NM_175665)	-78.0	NM_175659	319168.0	Mm.250564	NM_175659	ENSMUSG00000069302	Hist1h2ah	-	histone cluster 1, H2ah	protein-coding	7.0939755180877	7.10763916142553	7.07082145581134	7.48569130662904	7.22752471160653	7.02004768317184	7.50921912651047	7.10223310642256	0.0200794388417061	0.925140195682104	0.97240883634514
Merged-chr1-134091677-2	chr1	134091577	134091777	+	864.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12522.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	2.52420827327093	2.43424174884798	2.70474946828504	2.06673730596706	2.29687497422143	2.63353405478268	2.23326834131065	2.45729175285692	-0.221756688870599	0.782619397419808	0.91529005173258
Merged-chr18-12131485-4	chr18	12131384	12131584	+	977.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024182, intron 1 of 12)	intron (NM_024182, intron 1 of 12)	2634.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	5.18031058125326	5.74168265794433	4.78030504473379	5.14025977178921	5.62324429477133	5.83748041779098	5.37595461101989	5.58809620936734	0.618094082287657	0.0658054224276828	0.273117443905541
Merged-chr13-40977812-4	chr13	40977698	40977898	+	830.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155347, intron 1 of 4)	intron (NR_155347, intron 1 of 4)	-23212.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	4.06087239709171	4.09270550067865	3.61678030780504	3.77474050423954	4.42810685019633	4.18619240663052	4.08958462608724	4.0590089358974	0.816812826708775	0.0637442836410076	0.268141361578274
Merged-chr11-69097627-4	chr11	69097525	69097725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1324.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	6.39200239983721	6.72116276453385	6.30327140003194	6.28527122216945	6.2660019694407	6.27912391236321	6.09211054800386	6.31724268625032	-0.287394434891038	0.21972610793825	0.527358958658552
Merged-chr9-21718225-2	chr9	21718125	21718325	+	895.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-5351.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	2.78294957336169	3.05450443236614	2.92448689109115	3.33856039462714	2.91883804206789	3.16187803118314	3.15624657722494	3.27336005160638	0.3017821526616	0.634995357453335	0.845508250522306
Merged-chr12-108794455-5	chr12	108794300	108794500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009537, intron 1 of 4)	CpG-3499	1089.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	6.68492252739888	6.74621790953916	7.20463703342248	6.63163715095158	6.66107960510156	6.81635952303799	6.72595348669454	6.7555505961391	-0.126655702928119	0.56943732106339	0.809366519988776
Merged-chr17-67261158-3	chr17	67261063	67261263	+	790.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	L1MA5|LINE|L1	93296.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	2.878228047399	2.97593377764906	3.24888734758508	3.06378075352197	3.07845591755083	3.36211395517	3.06575194789184	3.19225368490828	0.501009921134895	0.382816770891409	0.684773696604333
Merged-chr1-180314849-4	chr1	180314761	180314961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-15615.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	5.72696165706772	5.95013737193539	5.3563000218204	5.44357574607647	5.90252244139936	5.71825065522447	6.04152773191948	5.64728745262074	0.338888022829342	0.232983324455	0.54256568138009
Merged-chr13-9011802-1	chr13	9011702	9011902	+	755.666687	f0_balb.idr	Intergenic	Intergenic	-15790.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	6.12816384259088	6.13562080509347	6.32264529427037	6.06992125218837	5.99283831511187	6.19801278066948	6.11842877412925	6.8841541555056	0.274411128237205	0.324872423416732	0.636413767067003
Merged-chr13-41603579-4	chr13	41603459	41603659	+	941.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2657.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	4.1295594140529	4.14944584903086	4.08397292822924	3.73896254230783	4.04335466671116	4.20881511148001	4.19859212567269	4.03362449135215	0.265589415442294	0.534828317995949	0.789425619054709
Merged-chr18-38190694-4	chr18	38190584	38190784	+	969.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19078.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	5.01432555726754	4.54953174408287	5.08121151573678	4.8653493119346	4.89483105318409	5.12002582186502	5.17771403639319	5.25708192558742	0.439890806528312	0.184379533983848	0.481789678760511
Merged-chr2-165983154-4	chr2	165983048	165983248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1M|LTR|ERVL-MaLR	-9489.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	7.64973576846572	7.89085594613998	7.34787409219942	7.71210510466346	7.41965051435543	7.6380839440591	7.84975321697523	7.60302347497915	-0.0486234987501864	0.805179149790742	0.925171083261684
Merged-chr10-76835851-3	chr10	76835715	76835915	+	812.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347216, intron 2 of 15)	intron (NM_001347216, intron 2 of 15)	-13003.0	NR_152849	59093.0	Mm.272803	NM_021568	ENSMUSG00000001120	Pcbp3	AlphaCP-3	poly(rC) binding protein 3	protein-coding	3.03867403697235	2.93433129316902	3.20253244467872	3.05079458916516	2.88728709887754	2.81524257100288	2.84301298250677	3.09423313076355	-0.620598579065863	0.304110447350042	0.616773351149095
Merged-chr6-108277116-3	chr6	108276990	108277190	+	964.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	63994.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	4.07726331981152	3.38467751374373	3.9132960749903	3.8581527284654	3.64836628838297	3.41994998170632	3.54667175733254	3.61485022622553	-0.819873174411389	0.113048324131783	0.371619021076811
Merged-chr11-4187707-2	chr11	4187607	4187807	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	874.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	2.86609607876692	2.71621679721444	3.5266796903119	2.50565144510251	3.13862200429198	3.3558516870389	2.9906573391053	3.00035116243161	0.609214098208778	0.395135767778781	0.694085386552044
Merged-chr6-130954354-4	chr6	130954233	130954433	+	901.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	293029.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	4.2103843464912	4.32607010372776	4.11768958353832	4.52828214172705	4.16450227225058	3.91095732104851	3.89331580432135	4.45278648235392	-0.469959051350958	0.281818918691217	0.593954970650299
Merged-chr8-123518833-4	chr8	123518720	123518920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018855)	promoter-TSS (NM_018855)	-15.0	NM_018855	104346.0	Mm.117265	NM_018855	ENSMUSG00000040220	Gas8	Gas11	growth arrest specific 8	protein-coding	7.642581760782	7.73516764187101	7.67729993886203	7.27891214014775	7.78788322198393	7.8462583115419	7.60644162300591	7.57793377161665	0.166144469906544	0.384780604055423	0.686251531347055
Merged-chr2-60923283-4	chr2	60923176	60923376	+	961.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	39928.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	4.93380179959087	4.68280828605291	4.86115364653612	4.88959302633288	5.31361718851992	5.14302142850496	5.10712584660731	4.85793942085809	0.541043858659938	0.091996862074031	0.331713175481598
Merged-chr7-110062071-1	chr7	110061971	110062171	+	1000.0	f0_balb.idr	intron (NM_009281, intron 1 of 15)	CpG	369.0	NM_009281	20841.0	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	6.3157952938301	6.35575145644944	6.65730398612252	6.06511405681037	6.26041097631999	6.35649482546866	6.45735124831643	6.50203218743595	0.0659436299798876	0.78392591508055	0.915879829123473
Merged-chr17-56930228-4	chr17	56930116	56930316	+	838.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022328, intron 1 of 11)	intron (NM_022328, intron 1 of 11)	5172.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	3.74330943604838	3.92542478426539	3.90647268016737	3.82368084211867	3.84177327635652	4.26463281525942	3.89019173105588	4.21854774142676	0.570971443868599	0.194006220747634	0.49433215631272
Merged-chr13-48873748-6	chr13	48873624	48873824	+	707.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2839.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	3.62542453282328	3.77189158076992	3.78807344677248	3.72231197829837	3.70769870372602	3.62183804469214	3.91463358989763	4.05857905138116	0.311688427909297	0.498120933492715	0.767507065543672
Merged-chr2-3752523-4	chr2	3752425	3752625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	39067.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	5.23042399476855	5.07922962496114	5.3233384441914	5.36095390513639	5.50669534725884	5.16525695481564	5.53658727440788	5.19554223642043	0.200278218970869	0.500924349759779	0.769036743031551
Merged-chr1-144241164-4	chr1	144241103	144241303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	7901.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	4.87244287956817	5.45812803578131	4.68128911104592	3.81658239158747	4.77999024120169	5.04855145516363	4.73848887895299	4.90506761591059	0.0563146025278755	0.905420026318664	0.964885884722431
Merged-chr14-84444442-3	chr14	84444356	84444556	+	826.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001013753, exon 1 of 4)	5' UTR (NM_001013753, exon 1 of 4)	893.0	NM_001013753	219228.0	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding	3.17515747620706	3.05967810921381	3.33431968458766	3.13230527217736	2.84415503042217	2.89265562396801	2.85033998101961	3.38089378919893	-0.671772935862489	0.281024204454063	0.593153291080506
Merged-chr2-174041701-4	chr2	174041600	174041800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-35351.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	4.42042253401435	4.9896359371615	4.92797723395117	4.93988213782709	5.33072157260603	5.95834223087243	5.47769468516634	4.84559096985596	1.13445808657439	0.00302348077962813	0.0321782802651242
Merged-chr10-25292332-3	chr10	25292271	25292471	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 1 of 7)	intron (NM_018747, intron 1 of 7)	6792.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	3.59860121080532	3.52014689873313	3.29799106447485	3.47291889823079	2.77757735379091	3.01620125787989	2.97097181036589	3.296160642748	-1.85366933975025	0.00319324609895574	0.0335081549787605
Merged-chr7-28796034-4	chr7	28795895	28796095	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177158, exon 8 of 12)	exon (NM_177158, exon 8 of 12)	7026.0	NM_177158	320435.0	Mm.74632	NM_177158	ENSMUSG00000051735	Rinl	5830482F20Rik|9930116N10Rik	Ras and Rab interactor-like	protein-coding	4.87857566157638	4.69775182050244	4.72313156504379	4.89038734411058	4.93834120455399	5.19057920037707	5.23149374839007	4.94757246918009	0.532407631377267	0.0984472209616609	0.343994301133918
Merged-chr11-106627923-4	chr11	106627843	106628043	+	857.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-15013.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	3.56523509966527	3.94414838307581	3.6269446000709	3.82168312700695	4.074171723239	3.91547884209079	3.88043354355013	4.07568130951234	0.659415023026271	0.144825838580686	0.424036712956412
Merged-chr9-40457635-4	chr9	40457532	40457732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	-1868.0	NM_172768	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	5.71688486385582	6.25838106107585	6.37978953148945	6.85892149291001	5.98601084303515	6.20267021741074	6.46131013154863	6.08693721320246	-0.28752551500197	0.344431319921958	0.652914285727938
Merged-chr18-65555124-3	chr18	65555021	65555221	+	818.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 1 of 6)	LTR16E1|LTR|ERVL	-25109.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	3.66334581499601	4.01388032350072	4.15412913713655	4.10416602101855	4.0191979812315	3.78174405610746	3.70816336891521	3.88063598390436	-0.398555643392902	0.386768387621699	0.687797608117846
Merged-chr11-120549702-4	chr11	120549604	120549804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033231)	promoter-TSS (NM_001033231)	23.0	NM_001033231	192173.0	Mm.262300	NM_001033231	ENSMUSG00000061111	Mcrip1	Fam195b	MAPK regulated corepressor interacting protein 1	protein-coding	6.90926729508393	7.11790482289687	6.47790095298602	6.2584650003732	7.09182325433539	7.24602839067392	6.98741493681712	6.83846648916158	0.450718769660133	0.0779130271302172	0.301827112120482
Merged-chr11-53788496-3	chr11	53788391	53788591	+	849.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	18018.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	3.27593032310345	3.21796716159892	3.14285743616898	2.92503565112914	3.32739261082995	3.3286085264455	3.77725354233289	4.02597611879573	1.75611377513479	0.00191824387554227	0.0226319709625764
Merged-chr3-86774707-4	chr3	86774575	86774775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077688, intron 54 of 54)	Tigger6a|DNA|TcMar-Tigger	146209.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	6.00317102617402	6.02380504745931	5.89829257874185	5.86059230523362	5.5866182371251	5.5999282556496	5.80047590278235	5.59646151677472	-0.485798167415581	0.0537355498471969	0.241971449520695
Merged-chr14-70111044-4	chr14	70110995	70111195	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	11002.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	4.59954606770701	4.94765791768803	5.02378598386704	4.80814576212506	4.24982922889248	4.64638934157377	4.73504131692696	4.67834360140819	-0.583759452436929	0.111239832670322	0.368537125696065
Merged-chr6-86733398-4	chr6	86733316	86733516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011818)	promoter-TSS (NM_011818)	-38.0	NM_011818	23885.0	Mm.321452	NM_011818	ENSMUSG00000001157	Gmcl1	2810049L19Rik|Btbd13|DIP|Gcl|Gcl-1|glc-1|mglc-1	germ cell-less, spermatogenesis associated 1	protein-coding	8.09284297985189	8.09446960394355	8.11889289096899	7.88970130421593	7.83269553370634	7.96082406692473	7.93799315533551	7.92182608792912	-0.172917088913186	0.284582145750822	0.596386649562719
Merged-chr5-146261150-4	chr5	146261061	146261261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153599, intron 2 of 12)	LSU-rRNA_Hsa|rRNA|rRNA	29911.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	7.58583611671465	7.74628813718846	7.85681189182591	6.37816508255473	7.27239491043411	7.44380961024848	7.13709595634696	8.18394728159453	0.0883741304700101	0.861741754811719	0.947816060662031
Merged-chr2-91947893-4	chr2	91947783	91947983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166597, intron 1 of 31)	intron (NM_001166597, intron 1 of 31)	2465.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	7.58210455678319	7.00024740534154	7.35953919404885	7.51829793462107	7.12008326598593	7.16269567682569	6.82520819270324	7.1526941995125	-0.426058091625909	0.0444947261305968	0.215170195750374
Merged-chr17-56266075-4	chr17	56265985	56266185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	9292.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	5.37259726435085	5.85222768322325	5.52928730262661	5.68550894435896	6.1422454837518	6.01467656185352	5.53043336158997	5.98752210226832	0.511090979829919	0.0698033573754506	0.282790832462691
Merged-chr7-38228027-4	chr7	38227930	38228130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024413)	promoter-TSS (NM_024413)	-36.0	NM_024413	72287.0	Mm.333798	NM_024413	ENSMUSG00000074170	Plekhf1	1810013P09Rik|APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology domain containing, family F (with FYVE domain) member 1	protein-coding	7.23465912797218	6.95169174252883	7.20275618324691	7.52676072396583	7.40641846719702	7.07841898319009	7.41846208762916	7.21990373983866	0.0481571611334075	0.819239045628852	0.930749804852404
Merged-chr1-64615880-6	chr1	64615826	64616026	+	822.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025964, intron 1 of 2)	intron (NM_025964, intron 1 of 2)	1242.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	3.58580609863519	3.70560990690102	3.90230111326061	4.05849790965328	4.07427938789977	3.70255784513314	3.63103630906095	3.75183727807895	-0.0748667887481466	0.878632793947642	0.954695665268352
Merged-chr11-20220544-3	chr11	20220446	20220646	+	901.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 3 of 5)	intron (NM_008996, intron 3 of 5)	19134.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	4.27085948122159	3.72019104820545	4.08021412427177	4.04151057899263	5.05948036682788	4.20783478642295	4.06280295478699	4.35471919658469	1.0857326977681	0.0225096892313727	0.138588470838572
Merged-chr11-109413783-4	chr11	109413665	109413865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12181.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	6.7902635232064	6.88965601438627	6.73552354668432	6.38774032978023	6.76481048550445	6.92556823217314	6.37819328638367	6.34968999070214	-0.105384018214422	0.668048484905713	0.862837936034118
Merged-chr2-12317576-4	chr2	12317473	12317673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15629.0	NM_001001309	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	7.56150440163175	7.18162080030914	7.93482226293993	7.83253927193165	7.49634987812184	7.45856403118283	8.0355538776257	7.57550935714674	0.00114743042070758	0.996053573854898	0.998543856884531
Merged-chr13-107758501-4	chr13	107758409	107758609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	71112.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	6.54283687253106	6.49603038056644	6.89658676816611	6.92039602222865	7.00953278573428	6.48088409764995	6.71280487883822	6.82601571172693	0.0622582215317338	0.788568574491116	0.91812687233996
Merged-chr8-117298383-4	chr8	117298277	117298477	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	41358.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	5.44370067159516	5.28834333177483	5.38920114590806	5.89531345041572	5.24716225275669	5.13456270836456	5.18106119557509	4.95123441304946	-0.73790988725871	0.0207646313839391	0.13134325933328
Merged-chr11-87212507-4	chr11	87212403	87212603	+	853.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197987, intron 22 of 23)	intron (NM_197987, intron 22 of 23)	85428.0	NM_197987	68729.0	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	4.3405445348143	4.24164546796953	3.75030431128775	3.80764317570294	3.87474048552936	3.87093297224039	3.94590179599532	3.85865703890716	-0.452989150305121	0.329080026967943	0.640336735854547
Merged-chr10-67536179-4	chr10	67536083	67536283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1686.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	5.77282816269618	5.76249775004533	5.60974321941074	5.99059571888205	5.93671580763474	6.39643020550013	5.9555432345267	6.27130678761144	0.535013231195108	0.0427752716326715	0.210269410189359
Merged-chr2-19580740-4	chr2	19580634	19580834	+	946.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-26824.0	NM_027600	70909.0	Mm.158488	NM_027600	ENSMUSG00000026734	4921504E06Rik	4921522E24Rik	RIKEN cDNA 4921504E06 gene	protein-coding	4.38249729097637	4.39885412022322	4.55589812638409	4.61301490580203	4.9347490730322	4.4650638118474	4.57432341392654	4.55296988269811	0.348661316110221	0.347221843580019	0.65535995064671
Merged-chr1-97630739-3	chr1	97630638	97630838	+	846.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30938.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	3.94471703731424	4.22605449635036	4.26885992079754	4.47025536621709	3.83772568840417	3.70493883776411	4.1218039085665	4.13751932665273	-0.765396472995867	0.0890898997077438	0.325647305053022
Merged-chr17-70728930-4	chr17	70728855	70729055	+	936.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	(CA)n|Simple_repeat|Simple_repeat	117822.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	4.24263237484021	4.55140015738078	4.57152746460347	4.50599820037849	4.21025024775026	4.11051527395895	3.85319493859961	4.56845183992381	-0.632715433239389	0.134910773250934	0.408839148894254
Merged-chr8-75089096-4	chr8	75088967	75089167	+	975.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4551.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	4.72803505891126	4.51723612385253	4.62244644077552	4.49955006395488	4.56612588554293	4.20337205161261	4.11582028249181	4.5431856973063	-0.469438322752737	0.226997250703608	0.535635249720938
Merged-chr3-131701142-4	chr3	131701048	131701248	+	831.575012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135116.0	NM_001289477	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	4.03271367311696	4.10655515715996	3.97708358789967	4.09834983016075	4.90482045844168	4.3171558298005	4.61642028080816	4.49033490204879	1.30033095238377	0.00107642302093615	0.0142599505317726
Merged-chr7-123240231-4	chr7	123240103	123240303	+	795.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146198, intron 5 of 16)	intron (NM_146198, intron 5 of 16)	25337.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	3.97984599632226	3.38573555404706	3.8366411526744	4.03905719161667	3.95478896236168	3.79325550949459	4.00684391512938	3.78275201840438	0.134747147005892	0.783316326544611	0.915603461813267
Merged-chr7-81074859-4	chr7	81074757	81074957	+	887.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054085, intron 3 of 13)	intron (NM_054085, intron 3 of 13)	17257.0	NM_054085	116904.0	Mm.475768	NM_054085	ENSMUSG00000038763	Alpk3	AW319487|D330016D04|MAK|Midori|mKIAA1330	alpha-kinase 3	protein-coding	3.87390637753715	4.04572674379396	4.48789561549466	4.23897089181331	3.90145175592352	4.10396159219676	4.15665409881521	4.33999810719354	-0.140201012589081	0.74945512140609	0.901349454017371
Merged-chr4-16214152-4	chr4	16214042	16214242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 3 of 6)	MTD|LTR|ERVL-MaLR	50032.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	5.66648115546542	5.33257971577502	5.76450041320427	5.60854466328843	5.9795509202653	5.53198094706697	5.7582322394477	5.47377860232866	0.196773127416607	0.489487867906505	0.761790645218583
Merged-chr13-31507021-3	chr13	31506914	31507114	+	916.8777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51156.0	NM_008239	15220.0	Mm.44235	NM_008239	ENSMUSG00000038415	Foxq1	HFH-1|Hfh1|Hfh1l|sa	forkhead box Q1	protein-coding	4.14310105202114	4.69370965098999	4.4309010702606	3.96224859822308	3.73916163670015	4.01514366584114	3.8188493994861	3.94305720185609	-1.20426530088248	0.010130832167921	0.0796622296597934
Merged-chr15-67415926-3	chr15	67415845	67416045	+	678.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERV3-16A3_I-int|LTR|ERVL	189176.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	3.39526756438324	3.59070595202334	3.33630448468765	3.90988841277795	3.25007317852661	3.67595919366886	3.13135313171255	3.33464952585441	-0.776436515133441	0.176579645510726	0.47171186293143
Merged-chr2-33436454-4	chr2	33436329	33436529	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5105.0	NM_001276332	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	4.90195170377347	4.96500543509558	4.86452469468379	5.16864970631438	5.26081080616069	5.28312718799681	5.20672648006409	4.78143905068482	0.296564129824438	0.363696071881419	0.668703606035376
Merged-chr4-136149743-8	chr4	136149633	136149833	+	889.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	5911.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	3.11105288614845	3.28296729579749	2.98388145836147	2.35581503070472	3.32198206270078	3.16362452824675	3.03787943693158	3.33268830792302	0.837467680753259	0.28611834986698	0.597670374913625
Merged-chr10-77610338-4	chr10	77610246	77610446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301673, intron 2 of 3)	L1MC5|LINE|L1	-3363.0	NR_125903	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	6.09312983947304	5.72792206643679	6.05473320311108	6.46401850059557	5.4078992628004	5.69202208901463	5.57294305064109	5.94595139141641	-0.748210988315903	0.0105912206861894	0.0823083673868783
Merged-chr19-8212649-4	chr19	8212552	8212752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172776, intron 2 of 9)	L1_Mus2|LINE|L1	6248.0	NM_172776	236293.0	Mm.440581	NM_172776	ENSMUSG00000075044	Slc22a29	D630002G06Rik	solute carrier family 22. member 29	protein-coding	6.46369269383497	6.57932915629463	6.90531031500191	5.78000454035832	6.18717514429039	6.01816277353594	6.54160595968445	6.26423652099752	-0.321134337033622	0.28754227020915	0.599383779240209
Merged-chr4-139741937-3	chr4	139741848	139742048	+	973.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011039, intron 8 of 8)	MTD|LTR|ERVL-MaLR	88410.0	NM_031873	83770.0	Mm.190612	NM_031873	ENSMUSG00000028738	Tas1r2	Gpr71|T1r2|TR2	taste receptor, type 1, member 2	protein-coding	3.22674246870594	3.12010113271849	3.2271304392624	2.41572703070844	4.59286011243115	4.5809385761824	5.10916414143334	4.94113769880675	8.63879804351572	1.21365668278827e-19	3.85655665286547e-17
Merged-chr14-73168789-4	chr14	73168705	73168905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 10 of 14)	intron (NM_134083, intron 10 of 14)	26020.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	7.30991020678625	7.59210350387713	7.47824077224644	7.31629619435551	7.38880328386293	7.62720307939368	7.09474152303075	7.19631221253742	-0.113125874831299	0.571480214038	0.810639407396363
Merged-chr13-37830906-3	chr13	37830805	37831005	+	955.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	3512.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.61162374385576	3.38477227459916	3.80579023287878	3.71279207727831	3.5668336194691	3.55781685254203	3.59772961224203	3.55649559853124	-0.226405651970139	0.643166005013115	0.849459897971419
Merged-chr10-53505712-4	chr10	53505607	53505807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037973, intron 3 of 3)	intron (NR_037973, intron 3 of 3)	13282.0	NR_037973	100502868.0	Mm.297722	NR_037973	ENSMUSG00000112739	Gm20597	B230314j19	predicted gene, 20597	ncRNA	6.78495615680861	6.76264576179547	6.87053498650557	7.41800204859185	7.06791144790504	6.67152048097467	6.90163707243074	6.81007258894861	-0.18160242391213	0.45213463229795	0.736542568598338
Merged-chr15-83169876-3	chr15	83169788	83169988	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 1 of 8)	intron (NM_029787, intron 1 of 8)	2320.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	3.4568863485953	3.28340295244781	3.28868139626591	3.36994784201131	3.5043094433218	3.40029601068381	3.44354734644395	3.34562822114565	0.266007952429423	0.599019498440616	0.826146116839364
Merged-chr16-93005690-4	chr16	93005576	93005776	+	941.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179602.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.06678091519954	4.14339141330339	4.1605371566776	4.1756780432843	4.29064259294532	3.85951945057555	4.30836916098359	3.96471377387269	-0.0241093927338927	0.954335728336388	0.98373809489276
Merged-chr10-15300325-4	chr10	15300215	15300415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-491462.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	5.6794577728835	5.50758219954622	5.99782366338088	5.92017875790433	5.45161007823159	5.53935543811688	5.92660216725006	5.82224275681773	-0.168631556855267	0.551991333904042	0.799263419096705
Merged-chr1-92834301-3	chr1	92834255	92834455	+	835.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016696, intron 1 of 8)	intron (NM_016696, intron 1 of 8)	2710.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	3.51704974463086	3.2416294085571	3.14857059365813	3.13820991840531	3.14507841631753	2.90932950840159	3.19628358708717	3.3181504493777	-0.433189177778174	0.455087660214209	0.738746012503745
Merged-chr4-129702208-2	chr4	129702094	129702294	+	685.0	f0_c57.idr|f1_c57bl6.idr	TTS (NR_045036)	TTS (NR_045036)	-5349.0	NM_001356378	230770.0	Mm.257157	NM_199305	ENSMUSG00000053730	Tmem39b	6330509E05Rik|BC037095	transmembrane protein 39b	protein-coding	3.73934035616749	3.17116573102299	3.27949692332827	3.18765874765077	3.73777752011322	3.26313269539483	3.49003171043768	3.14919092354585	0.259610382219064	0.656369593704418	0.85658929556191
Merged-chr13-97559855-4	chr13	97559730	97559930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046157)	promoter-TSS (NR_046157)	-170.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	6.47054096114866	6.80386930273112	6.45436242951675	6.65537860768915	6.60739042638626	6.55920243640606	6.59934508007575	6.35978868776978	-0.106682743445618	0.622332217063645	0.83831156940409
Merged-chr4-155529502-4	chr4	155529399	155529599	+	985.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160016, intron 3 of 11)	B1_Mur4|SINE|Alu	-32882.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	4.95771806690134	5.39281927077529	4.88111204676689	5.14781243549501	5.4370634251477	5.37088611633313	4.97170515509729	5.16278047535958	0.253673192806875	0.432102009307109	0.722198138555674
Merged-chr15-84842674-4	chr15	84842572	84842772	+	715.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356573, intron 2 of 12)	intron (NM_001356573, intron 2 of 12)	12427.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	3.30365874590938	3.45403539237038	3.36731449499588	3.43177306263925	3.20143935879074	3.48362021908189	4.00921183925452	3.73889491348483	0.795200438649921	0.145517404666834	0.425109105141825
Merged-chr7-90068074-4	chr7	90067978	90068178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38919.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	6.92151737538295	6.89103895789309	7.05194049501592	7.327475779063	6.2093685328292	6.12829401084568	6.51719687293927	6.18301143297635	-1.15713646647076	4.08169192610615e-07	1.5429142305274e-05
Merged-chr14-32683384-3	chr14	32683315	32683515	+	928.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195097, intron 1 of 3)	intron (NM_001195097, intron 1 of 3)	1857.0	NM_001195097	100504518.0	Mm.318319	NM_001195097	ENSMUSG00000071540	3425401B19Rik	Cefip	RIKEN cDNA 3425401B19 gene	protein-coding	3.59054074799502	3.81890626094107	3.78781042861071	3.74088738962453	3.25439973884962	3.53573915468177	3.40858476302961	3.41905944128255	-1.13843596459723	0.0243458824626951	0.145806947228622
Merged-chr14-69823698-4	chr14	69823566	69823766	+	702.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16741.0	NM_028560	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	3.74132575535619	3.87868022334828	3.97322007324739	3.67362140094828	3.69313492160781	3.57469959012026	3.50836614111636	3.63409123125165	-0.634390398394233	0.183710316535197	0.480787865791462
Merged-chr6-71415646-3	chr6	71415558	71415758	+	882.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355745, intron 2 of 9)	intron (NM_001355745, intron 2 of 9)	24979.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	3.42431807532805	3.35025856338224	3.58119470166813	3.75876298945779	3.11620273114697	3.15128162769452	3.51645644826637	3.42291862955083	-0.831367668905151	0.134724283710547	0.40859681762081
Merged-chr1-131246053-4	chr1	131245954	131246154	+	848.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313731)	promoter-TSS (NM_001313731)	-876.0	NM_018750	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	4.01499687614905	4.09441371950564	3.91422234856552	3.95770241687594	4.04905919880554	4.3651633689612	4.13540235259921	3.80236170996481	0.275370418986056	0.520371196117539	0.780781664209835
Merged-chr7-28601189-3	chr7	28601086	28601286	+	726.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3002.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	3.39300550270417	3.53315892630261	3.3934615225524	3.22177726773127	3.46990116977407	3.04239600862054	3.38027331977888	3.54786602294331	-0.0223449093154016	0.967482292948119	0.988536511573071
Merged-chr10-118892717-3	chr10	118892613	118892813	+	796.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23810.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	3.76588947128047	3.89230569891389	3.92176966557263	4.0458528436687	3.56774262204358	3.99322156907653	3.998051867021	4.01332718114995	-0.0599348941328984	0.896253011659376	0.961046277451873
Merged-chr17-63864891-2	chr17	63864791	63864991	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	intron (NM_001037997, intron 1 of 18)	910.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	2.94626685983342	2.79841890046011	3.23558218095239	3.04902646198804	2.83956416745957	3.23967827445986	2.99900239154126	3.06843510269081	0.094639088168901	0.876109882000938	0.953401261896251
Merged-chr2-84355457-3	chr2	84355352	84355552	+	808.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018782, intron 9 of 15)	MTB_Mm|LTR|ERVL-MaLR	69814.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	3.54102043297065	3.46927865359943	3.75436870033662	3.81548071998175	3.51379415082098	3.40135436300072	3.99947484705501	3.75213139214551	0.0794656791388124	0.876838807987518	0.953810061776222
Merged-chr18-62073871-4	chr18	62073768	62073968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	106113.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	6.27911060380089	6.01466320882761	6.65050544545178	6.39181810166916	5.74478372265183	5.76020713914927	6.26566672198029	5.80179524366517	-0.686361166509248	0.0113730791191882	0.0864752739464364
Merged-chr1-180885871-3	chr1	180885772	180885972	+	703.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7236.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	3.19281617337498	3.03033670790509	3.13689639541387	3.32194214411925	3.04745943131955	3.12420050899789	2.94246839420897	3.07644022409105	-0.541489946854131	0.345682751891818	0.653998610040464
Merged-chr10-116565094-4	chr10	116565077	116565277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359563, intron 1 of 13)	intron (NM_001359563, intron 1 of 13)	15359.0	NM_001359250	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	5.24967781368679	5.0644971174203	5.01658516577853	4.82557569738921	5.45785074801351	5.00057075798522	5.54366949816248	5.52009306262886	0.683618907390721	0.0292521363401567	0.164492582711739
Merged-chr15-72873256-4	chr15	72873153	72873353	+	791.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164642, intron 16 of 16)	L1MB5|LINE|L1	-62929.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	3.44532706971962	3.58666539706884	3.62243319417924	3.65706743365595	3.783597095723	3.79440313801423	3.76199312832088	3.8696783086188	0.649281930734079	0.158870953495686	0.446064231358103
Merged-chr4-105496347-3	chr4	105496245	105496445	+	830.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	338998.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.87135006122788	3.40417709548993	4.15771768573703	4.29076376188669	3.98777020871956	3.76000004962798	4.43722692533718	3.92183507212146	0.189172292341453	0.724007971088797	0.889931673933299
Merged-chr5-134509178-4	chr5	134509078	134509278	+	878.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009990, intron 8 of 16)	MIR3|SINE|MIR	43256.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	4.33355892876877	4.23135849906381	4.3767784799981	4.71095602710102	4.23562056916972	4.27377779926864	4.31487102064929	4.14591272029439	-0.484988026808946	0.227030987083454	0.535697097050095
Merged-chr6-54057191-4	chr6	54057054	54057254	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	MIR3|SINE|MIR	17222.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	4.1912791865038	3.85208795720819	4.10176427207933	4.36102840066799	4.19670546131703	4.27256873909163	3.82968018099067	4.00244973704106	-0.15911614378513	0.71874868063299	0.887667216205288
Merged-chr19-32712775-4	chr19	32712688	32712888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026487)	promoter-TSS (NM_026487)	-490.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	6.48784370220161	6.49388700001252	6.06907745075215	6.3697681592534	6.47693071003769	6.61474267469413	6.54908077781236	5.86987628873753	0.0629334787851019	0.807403858828436	0.925742758728357
Merged-chr7-19920617-4	chr7	19920500	19920700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027514, intron 1 of 7)	intron (NM_027514, intron 1 of 7)	543.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	5.35813212906755	5.81129451967312	5.39027121694338	5.44450037729255	5.64333084203621	5.71059986746932	5.58753790811945	5.68706660519207	0.240666609595205	0.380227059591494	0.682645963644831
Merged-chr18-32833118-3	chr18	32832984	32833184	+	672.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045381, exon 2 of 5)	non-coding (NR_045381, exon 2 of 5)	-4141.0	NM_001110016	225348.0	Mm.38816	NM_144863	ENSMUSG00000038299	Wdr36	5730444A13Rik|Ta-wdrp	WD repeat domain 36	protein-coding	3.4926329759152	3.45389449556841	3.59495260132932	3.72000843891461	3.16769458152281	3.30791844130485	3.4790789563405	3.25995180478563	-0.965149203374159	0.0683784773082239	0.279221595796114
Merged-chr2-80580952-10	chr2	80580868	80581068	+	936.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355410, exon 1 of 32)	5' UTR (NM_001355410, exon 1 of 32)	214.0	NM_001290745	50884.0	Mm.25203	NM_016965	ENSMUSG00000027002	Nckap1	C79304|H19|Hem-2|Hem2|Nap1|mKIAA0587|mh19|p125Nap1	NCK-associated protein 1	protein-coding	3.70374796849262	3.871143334932	3.80996371451719	3.64286466123817	3.93028182667892	3.87759661038092	3.63433602402787	3.99580808961445	0.336691000765029	0.456357305554503	0.739781289759821
Merged-chr11-106305983-4	chr11	106305888	106306088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4092.0	NM_008117	14599.0	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	5.51801938232701	5.53775259988777	5.46272443755486	5.44353688477637	5.66281852746982	5.7200400819533	5.46371897113695	5.51510992595402	0.187734471220836	0.478928990735535	0.754764349988147
Merged-chr1-23921961-4	chr1	23921828	23922028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357395, intron 1 of 10)	CpG	453.0	NM_001357395	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	5.32456648639275	5.43023959637828	5.92444972151861	5.76639632136708	5.53368464486472	5.82191390788856	5.93457723219541	5.47792469462035	0.101104478148308	0.73237877588098	0.893963778565797
Merged-chr12-73537890-4	chr12	73537788	73537988	+	919.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8507.0	NM_178715	238257.0	Mm.251196	NM_178715	ENSMUSG00000034435	Tmem30b	9130011B11Rik	transmembrane protein 30B	protein-coding	4.34102807397134	4.49997673230806	4.20496590105876	4.4978065771429	4.41528244440303	4.42493454216315	4.23380033881101	4.10276154598428	-0.228667150051777	0.558641120011765	0.803303359218534
Merged-chr2-45480867-2	chr2	45480767	45480967	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-215738.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	3.30834218649905	3.30215134803223	3.3087544870933	3.203596820737	3.32432526749032	3.42377283389401	3.61853208987029	3.85160824557533	0.987172251652429	0.0574606395831703	0.2515369535603
Merged-chr13-30729538-5	chr13	30729462	30729662	+	868.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19671.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	3.46355713032223	3.42508859667746	3.40877824611246	3.03528287273114	3.27511680444367	3.27452312255802	3.60072055086674	3.66165206568201	0.446013478441049	0.416942453273139	0.710744672757979
Merged-chr1-131116104-4	chr1	131116021	131116221	+	879.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18278.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	4.28630785083475	4.22664414646522	4.3320511571068	3.61787083540172	4.83086194515066	4.46261862020487	4.55133494715178	4.28427484406054	1.00248200766749	0.0234044204234739	0.141983872125942
Merged-chr6-96105788-3	chr6	96105681	96105881	+	859.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-7373.0	NM_182808	320265.0	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	4.74235318955811	4.36376361709409	5.02937062807537	4.73302379291674	4.0117550393913	3.97572066604046	3.95443242797958	3.71396809631711	-2.03635394677698	5.67291799703763e-06	0.000165760521392094
Merged-chr13-91170084-4	chr13	91169983	91170183	+	872.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 2 of 7)	intron (NM_025770, intron 2 of 7)	53904.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	4.54501552603304	4.11859194748115	4.33788979351667	5.0162206722318	4.25322577081553	4.0412502909539	4.52427407877339	4.42230600303892	-0.561387456004352	0.210023210135946	0.514484230514723
Merged-chr3-133544340-4	chr3	133544223	133544423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346736)	promoter-TSS (NM_001346736)	67.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	6.85496564322514	6.42601621042209	6.50404410470635	7.02062442853026	7.04096925857756	6.6993391411976	7.02906168650997	6.61726824353001	0.1814751238249	0.453730671164274	0.737638651163466
Merged-chr6-86397118-4	chr6	86397017	86397217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025823)	promoter-TSS (NM_025823)	33.0	NM_001355687	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	6.08127453530938	6.39975607231127	6.34889338793743	6.16512844128252	6.04329287387692	6.02851021664451	6.26408992426644	5.94406926113605	-0.271266880049882	0.252430815199818	0.563694839062207
Merged-chr17-50504318-4	chr17	50504228	50504428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5219.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	5.74253293081143	6.65764630006616	5.34842031850119	4.87848298708399	6.38722569910904	6.69773363749419	5.9512081446383	5.47911809108781	0.551071118643031	0.422949093751726	0.714938134013999
Merged-chr4-123026342-4	chr4	123026258	123026458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151450, intron 1 of 9)	intron (NR_151450, intron 1 of 9)	9765.0	NR_151450	66966.0	Mm.235030	NM_025873	ENSMUSG00000028653	Trit1	2310075G14Rik|AI314189|AI314635|AV099619|IPPT|IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding	5.34854157691661	5.60443317029916	5.55334372687142	5.6735634005103	5.65774558092931	5.36040194957515	5.78950329052704	5.46610088483008	0.0397463670356771	0.88654763221691	0.957444179369024
Merged-chr2-58940661-1	chr2	58940561	58940761	+	932.5	f0_balb.idr	intron (NM_001362394, intron 9 of 13)	intron (NM_001362394, intron 9 of 13)	185477.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	3.83932803892098	3.4090161650604	3.74504891241714	4.05041896364152	3.33598420982595	3.45934150602927	3.45936004667152	3.8375182037759	-0.799570310581167	0.135233635054926	0.409381349004647
Merged-chr16-4419904-4	chr16	4419720	4419920	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291910, exon 1 of 12)	5' UTR (NM_001291910, exon 1 of 12)	678.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	4.23610350408414	4.06191217620272	4.3210060360949	4.24202647782428	3.97028564771387	4.01122752800557	4.12855946774432	4.39704508382179	-0.216556008008003	0.599769785524542	0.826560500894977
Merged-chr14-31495093-4	chr14	31494967	31495167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359850)	promoter-TSS (NM_001359850)	-12.0	NM_028932	74427.0	Mm.491208	NM_028932	ENSMUSG00000021890	Eaf1	4933403C17Rik|AI666536	ELL associated factor 1	protein-coding	6.65158122186695	6.71834488354021	6.41483908211884	6.77320921975837	6.85048437861541	6.71640204099361	6.8048118074433	6.83467878955568	0.208731398309967	0.309026553308058	0.621433931428094
Merged-chr10-100016176-1	chr10	100016076	100016276	+	1000.0	f0_balb.idr	intron (NM_001347156, intron 1 of 8)	CpG	355.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	4.65770098746652	5.04970639992604	5.08063642681288	5.00532404665522	4.38190755241442	4.79304839512896	4.82839144826723	4.7361450406039	-0.574793432209924	0.103462278457634	0.35345099537249
Merged-chr2-93470392-4	chr2	93470284	93470484	+	896.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040532)	TTS (NR_040532)	-7434.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	4.2749027457654	4.48079679596205	4.27555849501781	4.27026269044102	3.95603597156237	4.57476080514735	4.4238958215891	4.17933339674945	-0.0797106426238858	0.846394015945701	0.941927981530162
Merged-chr5-43894279-4	chr5	43894204	43894404	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	25495.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	4.12830037085679	4.54426014059311	4.72492187020538	4.53870686313567	4.40090720630413	4.30882328954841	4.52122506763962	4.57805568039937	-0.111124983765194	0.772704702822449	0.911024117839381
Merged-chr2-125791570-4	chr2	125791425	125791625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8655.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	6.79424293964169	6.60352819882952	6.64608833876231	6.72465141788556	6.81816898559817	6.94333961348589	6.89379462215345	6.97358204715775	0.295331569458339	0.129556844298433	0.400544091574432
Merged-chr19-4122071-4	chr19	4121956	4122156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276284)	promoter-TSS (NM_001276284)	-481.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	6.57845135491194	6.60359274886276	6.7024465613004	6.34182580770076	6.86256301702899	6.83379959310758	6.73904560150055	6.45670097960832	0.269184682696507	0.221379870127684	0.529463056908312
Merged-chr9-50965534-3	chr9	50965448	50965648	+	942.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 3 of 15)	intron (NM_178710, intron 3 of 15)	43525.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	4.20516820944065	3.95076967181305	4.20583201377678	4.1163035287993	3.75669664975542	4.04556225123038	3.95823139237368	4.20314737373323	-0.342854919459482	0.425957640141771	0.717343464431248
Merged-chr1-132298818-4	chr1	132298683	132298883	+	803.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_144810, exon 1 of 5)	5' UTR (NM_144810, exon 1 of 5)	157.0	NM_144810	213417.0	Mm.39723	NM_144810	ENSMUSG00000042115	Klhdc8a	A630065K24Rik	kelch domain containing 8A	protein-coding	3.65940175880331	4.21095445997247	3.97935940270923	3.66913982994345	3.99625402273302	4.1025296864567	3.81382499273872	3.87903271971627	0.161850938310149	0.72808461782246	0.891779294267982
Merged-chr1-86059604-4	chr1	86059513	86059713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5006.0	NM_027357	70247.0	Mm.280013	NM_027357	ENSMUSG00000026229	Psmd1	2410026J11Rik|P112|S1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	protein-coding	6.06722362187185	6.27115174537141	5.8612128535266	6.34467174483784	6.39839636923685	5.76482614195495	6.13861935168851	6.12604110513046	-0.0369873895255126	0.888994947044467	0.958420116257639
Merged-chr9-96526182-4	chr9	96526076	96526276	+	731.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-47501.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	3.67957638376159	3.68604160687392	3.50240270142532	3.57522946069989	3.93256415763352	3.79912510217491	3.95801964291044	4.05843277791501	0.96821551775634	0.0303433431061078	0.168524408469854
Merged-chr11-115285503-2	chr11	115285403	115285603	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178035, intron 3 of 5)	intron (NM_178035, intron 3 of 5)	-8534.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	3.14957866118032	3.13898037981981	2.81584149160832	2.86480846940194	3.18450076769152	3.13712651406109	3.2496553917047	3.46085575444827	1.05170022599219	0.0686876781606565	0.279982875915864
Merged-chr7-101366560-4	chr7	101366447	101366647	+	876.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	-11575.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	4.23744814777737	4.706652360616	4.4137332304674	3.9204048727377	4.46421627362431	4.50176277817345	4.07198087676798	4.23549272995728	-0.0267699878614514	0.95148097273753	0.982767607831391
Merged-chr18-34954753-4	chr18	34954649	34954849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010481)	promoter-TSS (NM_010481)	-398.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	8.11475594094184	8.41584514723052	7.68149539778536	7.94225574800546	8.02861455915639	8.21673568478445	8.07749973613447	7.91590747554843	-0.00497487990462953	0.980146047707209	0.992782655212549
Merged-chr1-192532452-3	chr1	192532368	192532568	+	853.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 11 of 11)	intron (NM_144881, intron 11 of 11)	238751.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	3.40473551447528	3.47657445162887	3.66828840824657	4.01782126344862	3.18509231388822	3.11078331550469	3.65208013994081	3.2160327246319	-1.24678085033444	0.0348586303690311	0.184860859114682
Merged-chr11-43410480-4	chr11	43410387	43410587	+	977.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15494.0	NM_013917	30939.0	Mm.6856	NM_013917	ENSMUSG00000020415	Pttg1	AW555095|C87862|Pttg|Pttg3	pituitary tumor-transforming gene 1	protein-coding	4.79685704009617	4.82393170347699	4.67037870582694	4.61754354476345	5.54471326605459	5.19440608979881	5.21215024481139	5.17628253233513	1.12553471238235	0.000342946957321706	0.00565977775914716
Merged-chr1-43241417-2	chr1	43241317	43241517	+	953.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44656.0	NM_001289533	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	3.39224490091023	3.44033499263544	3.44511279914621	3.10639547510772	3.27543988491979	3.13432592770832	3.14831520245849	3.44308555708821	-0.317299149910702	0.56725368840485	0.808193724593543
Merged-chr5-135934007-4	chr5	135933901	135934101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018871, intron 1 of 1)	intron (NM_018871, intron 1 of 1)	640.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	5.78132614518715	5.69334111720279	5.234580257237	5.57608509956042	5.79397162285388	5.90871057669534	5.5237655707664	5.93219351591446	0.348596229617409	0.209670763764091	0.514168095492496
Merged-chr5-124432606-4	chr5	124432515	124432715	+	895.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6658.0	NM_001081203	243272.0	Mm.23879	NM_145631	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch 1	protein-coding	4.72541628306457	4.83241010930324	4.44665547681046	4.52871817478717	4.58847018031658	4.5312121973717	4.42694494225235	4.6493442250511	-0.185254553017312	0.607217215054662	0.829834769802161
Merged-chr5-122653498-3	chr5	122653397	122653597	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038845, intron 2 of 12)	intron (NM_001038845, intron 2 of 12)	3073.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	5.91547907386125	5.47857288259702	5.86102671340454	5.91186219373253	4.00940515844971	4.22608603059068	4.54256305288792	4.91837037744082	-2.68684629508018	1.27428491889897e-11	1.13377907802887e-09
Merged-chr13-41220481-6	chr13	41220384	41220584	+	934.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019423)	promoter-TSS (NM_019423)	-81.0	NM_019423	54326.0	Mm.2567	NM_019423	ENSMUSG00000021364	Elovl2	AI317360|Ssc2	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	protein-coding	3.56805790390839	3.66251118721805	3.3913575208554	3.61690274740251	3.68402035675146	3.56814942947124	3.96894308634834	3.45137442993489	0.360828287576841	0.467350342948298	0.746968519290045
Merged-chr5-108066192-3	chr5	108066157	108066357	+	942.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253880, intron 1 of 12)	intron (NM_001253880, intron 1 of 12)	583.0	NR_152817	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	3.34755326019122	3.36573607481012	3.23268355046699	3.59678556521031	3.25468101159217	2.91770993441286	3.27947824600851	3.50137125759347	-0.520537704488564	0.374368819479249	0.677784078373359
Merged-chr15-58745653-4	chr15	58745547	58745747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77780.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	7.31165594150778	7.15052290008975	7.03835761540693	7.21919514457627	7.42152771961858	7.24105490399993	7.33643597203806	7.40650375498698	0.231031519193719	0.200779269882198	0.502930308662197
Merged-chr16-31803882-4	chr16	31803796	31803996	+	968.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 8 of 22)	intron (NM_001357281, intron 8 of 22)	49546.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	4.53062071535795	4.62106960267524	4.221640359307	4.59293716886568	4.77344371940632	4.18830283561649	4.10132041317263	4.56704642024645	-0.125588610725131	0.763168670408708	0.907127891712087
Merged-chr8-70616067-4	chr8	70615965	70616165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153074)	promoter-TSS (NM_153074)	-779.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	7.20326670384786	7.22211057168349	7.4277109683906	7.52876753704717	6.99975987225624	7.0399450452448	7.28460114656639	7.05861179816628	-0.358053393061307	0.0655062301831607	0.272466432823429
Merged-chr7-102394117-4	chr7	102394039	102394239	+	659.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 3 of 11)	ID_B1|SINE|B4	-47556.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	3.67104031065886	3.626469916436	3.56211838397963	3.95257330092205	3.72838969362449	3.61850904837184	3.80341027335033	3.50202642017605	-0.173282722078672	0.723347401865661	0.889560682260869
Merged-chr15-24589226-4	chr15	24589101	24589301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	824563.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	7.95342348509175	7.89951039545426	7.86273624302092	8.1141058559053	7.83957523126734	7.87562735240114	7.60939153227304	7.49350943501791	-0.325534284484927	0.0686807262984049	0.279973965820638
Merged-chr1-193145355-4	chr1	193145254	193145454	+	922.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7758.0	NM_016851	54139.0	Mm.273695	NM_016851	ENSMUSG00000026638	Irf6	AI876454|E230028I05Rik|mirf6	interferon regulatory factor 6	protein-coding	4.45959778132302	4.30981175242636	4.72511008749646	4.33988911039285	4.33211066472345	4.25351855757623	4.73540816659888	4.57763501681613	0.0622226914327411	0.872856435803068	0.952329867778884
Merged-chr13-111936583-2	chr13	111936483	111936683	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LFSINE_Vert|SINE|tRNA	68647.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	4.45227546897077	4.1875912421372	4.61529534083336	4.89048339669935	4.55515783344346	4.49281400666005	4.29768545554743	4.72149685714247	-0.11711228800439	0.771636559293957	0.910432508664506
Merged-chr15-7134659-3	chr15	7134546	7134746	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113386, intron 2 of 16)	intron (NM_001113386, intron 2 of 16)	5074.0	NM_001358593	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	3.26443011635953	3.22024439561828	3.38401321978251	3.60359738422568	3.51189778032997	3.43731417205546	3.42678565405175	3.63873793629599	0.38787006296192	0.463154130853773	0.744592837493862
Merged-chr2-90583751-4	chr2	90583639	90583839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3092.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.99732128794856	6.62275368066599	6.96153634431331	7.09257556290704	6.90815857796252	6.50278739090082	6.86235308658344	6.98139356677645	-0.146886896367096	0.504946149645042	0.771129223660333
Merged-chr14-16365706-4	chr14	16365596	16365796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009409, exon 1 of 36)	exon (NM_009409, exon 1 of 36)	490.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	6.2696690236451	6.06125781335741	6.4985483521865	6.38614552375563	6.3302770699526	6.07333042198585	6.74909935832549	6.41117013157937	0.147855224723331	0.553382469268752	0.800173960261692
Merged-chr13-34253776-4	chr13	34253646	34253846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	90782.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	6.67784726521886	6.20312533824709	7.02168843571861	6.78173709480342	6.12352230778149	5.73804763761796	6.29036523770206	6.28039864449691	-0.851852038974786	0.00161813389893121	0.019830776995872
Merged-chr11-82567541-4	chr11	82567424	82567624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65829.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	6.04243963467326	6.03935056886588	6.26751237680316	6.25938490979751	6.24307088741383	6.15238577596368	6.42452441691114	6.42050937546914	0.227077349783771	0.323392447045764	0.634824903151419
Merged-chr15-75832257-3	chr15	75832132	75832332	+	953.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172121, intron 3 of 11)	ID_B1|SINE|B4	9676.0	NM_172121	223642.0	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	3.50727834299513	3.328592842434	3.50778215563857	3.5029548177813	3.3351186353731	3.3986182236103	3.15028590840212	3.34377856709001	-0.54849899492391	0.293382052338471	0.605961380749812
Merged-chr9-26999625-4	chr9	26999545	26999745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144543)	promoter-TSS (NM_144543)	-32.0	NM_144543	77862.0	Mm.16925	NM_144543	ENSMUSG00000035443	Thyn1	D730042P09Rik|HSPC144|MDS012|MY105|Thy28	thymocyte nuclear protein 1	protein-coding	7.94268874908629	7.99898092412975	8.09135432709854	8.28238852806833	8.06034958250996	7.79928009760385	8.27185320848369	7.73873066024956	-0.132432312708848	0.487529182270689	0.760838405280538
Merged-chr6-40595364-4	chr6	40595258	40595458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9553.0	NM_001038604	23845.0	Mm.103765	NM_021364	ENSMUSG00000029915	Clec5a	Clecsf5|Ly100|MDL-1|Mdl1	C-type lectin domain family 5, member a	protein-coding	4.86392076613326	4.9475286264819	4.90082192910817	4.83445653773887	4.95813050304876	5.0729465602819	4.9460680747218	4.74715179594651	0.105468365364594	0.740212854922402	0.897747679503546
Merged-chr11-115653706-4	chr11	115653609	115653809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 3 of 5)	intron (NM_001313936, intron 3 of 5)	-25414.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	5.23175690069394	5.26934210383269	5.37687405678894	5.74646682092559	4.93551476560522	4.54388441782333	5.14451476975682	5.13397562079362	-0.888684726064118	0.00927037484808721	0.0747542779327064
Merged-chr4-155683890-4	chr4	155683788	155683988	+	921.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10454.0	NM_178699	230991.0	Mm.29083	NM_178699	ENSMUSG00000074738	Fndc10	B930041F14Rik|MNCb-3966	fibronectin type III domain containing 10	protein-coding	5.90837224151164	6.22657329458338	6.00644836274431	5.97249060427417	4.78157591716271	5.23399692234177	4.81383456959635	4.68885244793072	-2.0586707232412	2.18477193981745e-11	1.86239379526067e-09
Merged-chr13-96578779-4	chr13	96578673	96578873	+	796.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023420, intron 3 of 17)	RMER6B|LTR|ERVK	36038.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	4.37275618059756	4.29364979848126	4.48872004018756	4.20849707674616	4.07259380492877	4.2776893674648	4.08655912892168	4.24280259577937	-0.420016550086703	0.289890119292125	0.601945471019989
Merged-chr13-34874425-4	chr13	34874321	34874521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1073.0	NM_013830	19134.0	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	8.03780734777568	8.0755486469026	7.92189496133733	8.02136545294438	7.78216614227384	8.11381099136901	8.11963682418896	8.09162684662855	0.014748217586855	0.929969288808862	0.974727857709636
Merged-chr10-67097989-3	chr10	67097884	67098084	+	958.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204915)	promoter-TSS (NM_001204915)	-996.0	NM_178606	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	4.10693918077782	3.81578511088284	3.92625504936749	3.99194036377904	3.81550630465077	3.71291672835093	4.16958498306735	3.71303118653132	-0.271805925322819	0.550134942920383	0.798420178617458
Merged-chr5-112951695-2	chr5	112951617	112951817	+	824.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 9 of 20)	MER67A|LTR|ERV1	-55355.0	NM_028901	74376.0	Mm.441903	NM_028901	ENSMUSG00000072720	Myo18b	4932408L24Rik|4933411E19Rik|Gm448	myosin XVIIIb	protein-coding	2.95453416068114	3.06748787776048	2.95494808940879	2.81616180536426	2.55873622473408	2.74309312093596	2.63040188466391	2.70633628605286	-1.45877165132334	0.0294081900149083	0.165063915601537
Merged-chr11-86655802-4	chr11	86655715	86655915	+	906.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 5 of 11)	intron (NM_001356531, intron 5 of 11)	15460.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	4.29669050471116	4.42834766207578	3.95077309006871	4.57070241044681	4.12959354235507	4.13015219367057	4.14223238129037	4.49478325555633	-0.278309786781944	0.513891815298423	0.776751544502021
Merged-chr5-43185006-4	chr5	43184913	43185113	+	965.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 5 of 7)	ORR1E|LTR|ERVL-MaLR	-48450.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	4.3265217235113	4.6019935542024	4.55422630773627	4.86600770468215	4.7009990157864	4.40534890104007	4.82657687446935	4.74401949927097	0.127900927932561	0.733959778753887	0.894701633675102
Merged-chr11-120519898-4	chr11	120519820	120520020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10807.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	6.69175464326206	7.03444926528445	6.69293347219146	6.53539405975335	6.97181693060731	6.82355321544922	6.87917738110725	6.38167405470493	0.0600743723849217	0.799000564007546	0.922381586635156
Merged-chr9-5344260-4	chr9	5344128	5344328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1248.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	6.31680165594968	6.20439078114511	6.33544510979498	6.40670946118791	6.01586807179654	6.00678531120514	6.3538365716986	5.71571757300935	-0.427206004134489	0.0837439903120785	0.31462121220434
Merged-chr14-70775035-4	chr14	70774894	70775094	+	636.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010071, intron 1 of 4)	intron (NM_010071, intron 1 of 4)	613.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	3.22898624234784	3.1765782329531	3.4512175299444	3.25635072848076	3.4244703673821	3.14317082442547	3.3855572830853	3.39735032308714	0.242721624148946	0.647287263199745	0.851615683763603
Merged-chr8-107435777-4	chr8	107435672	107435872	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025830)	promoter-TSS (NM_025830)	-626.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	5.22449278588946	4.98686564791596	5.16311195007991	5.04305192936131	5.46899952822372	5.05628223743536	5.19955930157532	5.12728750394603	0.254858890519098	0.405129998716628	0.70211945603104
Merged-chr4-65545716-4	chr4	65545625	65545825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207109, intron 17 of 22)	Lx9|LINE|L1	-59261.0	NM_053084	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	6.90384643507706	6.47757249740801	7.12726818505828	6.9190940708863	6.63564767675613	6.56856854775596	6.70679855435042	6.76516628913448	-0.291231572806432	0.190953588499079	0.490311892807621
Merged-chr18-65070780-4	chr18	65070694	65070894	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031881, intron 1 of 29)	intron (NM_031881, intron 1 of 29)	47267.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	4.99897550391221	5.12637551331801	5.0706031444962	5.39383098954009	5.43940416415439	5.13921549349865	5.04615703320471	5.16641861683856	0.0771887219966956	0.807379629871197	0.925731320971696
Merged-chr16-34114882-4	chr16	34114813	34115013	+	852.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 34 of 59)	intron (NM_177357, intron 34 of 59)	-147875.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	4.11562613345501	3.82456161038335	3.78031778619005	4.01199082867209	4.04461981027079	4.05699346834833	3.5923472631535	3.93289348806764	-0.0553450742723388	0.90359935966252	0.964287824952031
Merged-chr13-45326159-4	chr13	45326059	45326259	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63583.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	5.41036828513812	4.94073732766769	5.58542935360638	5.67384073001692	5.03149691226923	4.60672295785325	5.21382226738376	5.03829610873005	-0.824333589895375	0.0184212697367314	0.121203072881948
Merged-chr13-49307758-4	chr13	49307676	49307876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	1432.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	5.35187543228811	5.0216807518937	5.29334152537122	4.96576947769107	5.29892359393715	5.49732012385425	5.38238188643787	5.58626018768779	0.525869445515442	0.0771749820508748	0.300367540763609
Merged-chr2-172392369-3	chr2	172392277	172392477	+	867.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1417.0	NM_001080820	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	3.06778411146319	3.14994512966256	3.3783849786753	3.14382165942729	2.8391687648898	2.84314751917166	2.7301166554515	3.00669668306326	-1.45966520077582	0.0205783638293788	0.130504013728808
Merged-chr12-46870253-4	chr12	46870162	46870362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51487.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	6.60702367158256	6.42309521902288	7.06624947574061	7.39309901100169	6.37019515973105	6.3381360876814	6.2538264578969	6.58757017808845	-0.789461939368424	0.0040208293672882	0.0402246821551942
Merged-chr15-75842017-4	chr15	75841925	75842125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172121)	promoter-TSS (NM_172121)	-117.0	NM_172121	223642.0	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	7.2191940378276	7.50184719845881	7.11551943788637	7.39074461214725	7.61912350567291	7.41973069742426	7.06760665728559	7.22652256279904	0.0486454190486943	0.815210101718332	0.928710624683246
Merged-chr4-41723231-4	chr4	41723133	41723333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016890)	promoter-TSS (NM_016890)	-70.0	NM_016890	53598.0	Mm.29025	NM_016890	ENSMUSG00000028447	Dctn3	p24	dynactin 3	protein-coding	7.40095072829145	7.17832449457165	7.02877211153572	6.95998157838699	7.63269174197498	7.80253482122206	7.52115152498067	7.47299330590844	0.629577358337041	0.00120769011230587	0.0156454140290767
Merged-chr14-121919975-3	chr14	121919884	121920084	+	680.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-4210.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	3.54090576300425	3.75062341074586	3.74455567683624	3.59871949749401	3.49326763815043	3.41290733850685	3.58091923672729	3.48331114208326	-0.536892096732106	0.271429318552825	0.583222139604812
Merged-chr7-28050157-4	chr7	28050059	28050259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011874)	promoter-TSS (NM_011874)	-67.0	NM_011874	23996.0	Mm.29582	NM_011874	ENSMUSG00000030603	Psmc4	CIP21|MIP224	proteasome (prosome, macropain) 26S subunit, ATPase, 4	protein-coding	8.82550272478976	9.02640496757785	8.69849958119565	9.02493865324133	8.68261618232094	8.76692465998392	8.73085526384872	8.48979988259849	-0.292492231182293	0.0673107557226735	0.276814899559982
Merged-chr2-126658572-4	chr2	126658497	126658697	+	823.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355108, intron 1 of 7)	intron (NM_001355108, intron 1 of 7)	16755.0	NM_001355109	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	3.35133682853246	4.11016075578979	3.87237411171587	3.34102208097651	3.96691783277777	3.66717027795267	3.80721002008401	3.91682063978639	0.395614123557477	0.458942558606867	0.741674931980434
Merged-chr15-97952619-2	chr15	97952519	97952719	+	932.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11610.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	2.94306669217663	3.12349933402572	2.72183449644953	2.8754565139641	3.36156892516888	3.1852037100013	3.1791854935573	3.445063854176	1.48454671570256	0.0118714612487369	0.0892195903520056
Merged-chr15-58141381-4	chr15	58141277	58141477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001326599)	promoter-TSS (NM_001326599)	11.0	NM_001326599	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	6.82857857278016	6.74122507926983	6.69650764558557	6.76269572852651	7.05814270679252	7.13928339870217	7.00108223390479	7.07837794981473	0.433297333777983	0.0206852369005387	0.130969087114699
Merged-chr7-113143711-3	chr7	113143610	113143810	+	757.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1695.0	NR_045978	75239.0	Mm.381688	NR_045978	ENSMUSG00000110009	4930543E12Rik	4930545H14Rik	RIKEN cDNA 4930543E12 gene	ncRNA	3.82786461602981	3.49223877130276	3.56602917016058	3.39963037143688	4.00903329602817	3.84960544942812	3.66255629182871	3.72760087447139	0.781583647401246	0.103105299898872	0.352731526554926
Merged-chr19-37070068-4	chr19	37069973	37070173	+	840.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 7 of 10)	L1MA5|LINE|L1	-103770.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	4.10715870350516	3.94985099219385	4.24446089429905	4.42251417133371	4.15531236505042	3.96369393271875	4.225585223796	4.40252658267716	-0.0264410660282109	0.950503519056233	0.98228541121586
Merged-chr3-84040128-8	chr3	84040038	84040238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172681)	promoter-TSS (NM_172681)	23.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	6.71269508213947	6.69152198785123	7.07847686292675	6.39314110668006	6.75353866992318	7.07261319020633	6.96140935588339	6.89152102424682	0.273096566965801	0.235611066365801	0.545596983956385
Merged-chr11-116389353-3	chr11	116389233	116389433	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 2 of 18)	intron (NM_027258, intron 2 of 18)	23699.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	3.43479302954065	3.31187539570904	3.59777085454836	2.46730362316168	5.37369260110871	5.53266702316324	5.1625725012441	4.96818546690536	7.25801033471171	8.87274760812089e-09	4.75209407071811e-07
Merged-chr17-84646507-4	chr17	84646402	84646602	+	813.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172256, intron 8 of 12)	intron (NM_172256, intron 8 of 12)	20003.0	NM_172256	213575.0	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	4.70070550639468	4.24028020164842	4.66504720457631	4.73104310733613	4.76261283736696	4.13013932919187	4.60576288378909	4.54603597916149	-0.134639222897167	0.735871719016223	0.895714951678205
Merged-chr7-63931343-3	chr7	63931250	63931450	+	713.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	7565.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	3.78647924971366	3.94570633026149	3.51208806322879	3.26661725041673	3.79234890996746	3.56670108289283	3.77074880741018	3.96874151970464	0.409317556925114	0.428502990413712	0.719536067249938
Merged-chr4-59000805-4	chr4	59000685	59000885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2408.0	NM_001033165	72429.0	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	5.62801769285417	6.34760811523844	5.65732362351317	5.43409778053006	6.14731080138491	6.33428817250855	6.09036343453899	5.88334236129156	0.489815347919469	0.107402913358553	0.361453677613134
Merged-chr10-127049577-4	chr10	127049484	127049684	+	844.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010009, intron 2 of 8)	intron (NM_010009, intron 2 of 8)	1338.0	NM_010009	13115.0	Mm.6216	NM_010009	ENSMUSG00000006724	Cyp27b1	Cp2b|Cyp1|Cyp27b|Cyp40|P450c1|Pddr|Vdd1|Vddr|VddrI|Vdr	cytochrome P450, family 27, subfamily b, polypeptide 1	protein-coding	3.58716499554534	4.0641656082499	3.77187367434283	4.06187934179217	3.99622351759448	4.3746550657581	4.06000943463727	4.02936578045173	0.581450634696192	0.206725806439031	0.510726325935365
Merged-chr4-125115792-4	chr4	125115748	125115948	+	827.679138	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12033.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	3.82712934962853	3.84979649518983	3.60633231475193	3.5656834297202	4.09828237875729	3.89584135467378	3.86111415237268	3.96948851644377	0.737473226715611	0.0987399156337038	0.344464613126054
Merged-chr13-73461691-4	chr13	73461601	73461801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5682.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	4.93033614175887	4.74326949701316	5.06294337491803	5.2692340362362	5.12058304197232	4.45353661572916	4.83662598470054	4.78093572909938	-0.385042139762891	0.29301937219638	0.60553679205796
Merged-chr2-120404681-4	chr2	120404578	120404778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110496)	promoter-TSS (NM_001110496)	-562.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	6.41092284621798	6.63716158420669	6.41205474713081	6.43506010277619	6.8158346901147	6.80519951561994	6.71213031251553	6.56169337921914	0.366265748133148	0.0786633454458851	0.30347849677467
Merged-chr16-85117628-4	chr16	85117528	85117728	+	959.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 2 of 15)	intron (NM_001198825, intron 2 of 15)	56079.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	5.02818799356466	4.63832679078754	4.96222531605182	5.47843208134278	4.20599002901392	4.69960195145513	4.75540008673709	5.36522019745971	-0.487467749608851	0.262939109635342	0.574735947525663
Merged-chr13-49341501-4	chr13	49341415	49341615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029791)	promoter-TSS (NM_029791)	-34.0	NM_001039179	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	7.99192575449083	8.25250070823316	8.02768558913676	8.23289210004808	8.1985442990287	8.2908528561733	8.47395810117953	8.16410197228044	0.189787374197202	0.25722740078401	0.568961751410972
Merged-chr2-27308627-4	chr2	27308514	27308714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 3 of 29)	MTE2a|LTR|ERVL-MaLR	-61311.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	6.28619084216859	5.97074555993093	5.8954632475519	6.75591605404302	5.87980634837836	5.65344770179903	6.2724652713399	5.96171789257209	-0.510231452183864	0.0930239020763769	0.3336668813899
Merged-chr5-112280350-4	chr5	112280224	112280424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	MIR3|SINE|MIR	3633.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	7.00041854116534	6.8274173119767	7.59516551968037	7.57325109357672	7.04145327008146	7.0562887193569	7.28667703417317	7.44324042195739	-0.114532712386173	0.639755656876635	0.847707805592576
Merged-chr14-30746483-3	chr14	30746419	30746619	+	997.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166531, intron 2 of 21)	intron (NM_001166531, intron 2 of 21)	30904.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	4.19953160283813	3.76555299335846	4.5681201407509	4.46320083767787	3.83712449143355	3.73751924258648	3.66829561690923	4.10905146775113	-1.16703717911433	0.0169709368936927	0.114434853842
Merged-chr6-129474718-4	chr6	129474636	129474836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1957.0	NR_132130	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	6.09699537292183	6.00312722306472	6.25122240999926	6.79898545353756	5.768615020962	5.75865208408849	6.08678124218767	5.51081954139185	-0.854447973629998	0.00409544774838091	0.0408162804931398
Merged-chr15-13474465-3	chr15	13474365	13474565	+	734.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-300790.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	3.38147063982265	3.16209421384733	3.38188276753458	3.84428356522501	3.66755202661396	3.49549619381727	3.48368169571882	3.69843481663676	0.335870584353501	0.548778882351703	0.797649750024352
Merged-chr11-109470316-4	chr11	109470224	109470424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029842, intron 1 of 5)	intron (NM_001029842, intron 1 of 5)	2905.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	6.25031931431814	6.14849686979105	5.84070519295551	6.31620012380151	5.9943863495271	5.70720177286266	6.37445512505082	6.45062213221007	0.00703761377091459	0.979587697312787	0.99269129061727
Merged-chr5-137624246-4	chr5	137624133	137624333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027708, exon 3 of 10)	exon (NM_027708, exon 3 of 10)	845.0	NM_027708	71176.0	Mm.474695	NM_027708	ENSMUSG00000089984	Fbxo24	4933422D21Rik|Fbx24	F-box protein 24	protein-coding	5.4691083343508	5.54484805869065	5.32715861576185	5.67085934202623	5.12638675661027	5.2734666213101	5.30079254774892	5.26154293058018	-0.514026932322213	0.072322402405559	0.288979219941694
Merged-chr8-9008433-6	chr8	9008379	9008579	+	894.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123809.0	NR_045854	71249.0	Mm.158635	NR_045854	ENSMUSG00000108848	4933430N04Rik	-	RIKEN cDNA 4933430N04 gene	ncRNA	3.50613310009134	3.80126223271353	3.23005904963679	3.45387979860982	2.95963318753029	3.27972871169953	3.15627165003913	3.09940912560389	-1.49512517336302	0.010904839742319	0.0839765863917047
Merged-chr15-35460456-4	chr15	35460351	35460551	+	914.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 16 of 61)	intron (NM_177151, intron 16 of 61)	88905.0	NM_177151	666173.0	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	4.35090676315385	4.25730098786865	4.48347888080385	4.91887980639258	4.52461158475217	4.33206004918245	4.61854323985446	4.56146907927045	-0.0847531977565147	0.834040019869547	0.93666384570592
Merged-chr13-89742348-4	chr13	89742210	89742410	+	798.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019389, exon 1 of 14)	5' UTR (NM_019389, exon 1 of 14)	202.0	NM_001081249	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	3.52924746068618	3.66786083467801	3.91283716736822	3.75362988411516	3.73069785115281	3.88258764632644	3.79841078754247	4.24138612463543	0.572870579269707	0.223533218578756	0.531602771975184
Merged-chr16-8823859-4	chr16	8823766	8823966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-6234.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	6.82481668500177	7.13088890332583	6.66781741436173	6.53264640720257	6.84453687917771	6.81353936962226	6.3433891638903	6.60024915962487	-0.189020064351933	0.433797562699075	0.723256357491443
Merged-chr1-43092497-7	chr1	43092395	43092595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357299)	promoter-TSS (NM_001357299)	-9.0	NM_001357299	73122.0	Mm.246069	NM_001013025	ENSMUSG00000070939	Tgfbrap1	3110018K12Rik|AU024090|AU042859|AW742551|Trap1	transforming growth factor, beta receptor associated protein 1	protein-coding	5.8948391439924	5.79756905654575	5.49483216217767	5.59434745059925	5.92649011048111	6.20083005972764	6.11325647843288	6.19560004084865	0.653681938595792	0.00968355183929529	0.0771335649473142
Merged-chr5-123080318-4	chr5	123080237	123080437	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039723, intron 1 of 11)	intron (NM_001039723, intron 1 of 11)	4062.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	5.57117862048121	5.44628879772661	4.96633367255376	5.58139570061653	5.56981387196966	5.43287650624279	5.38295672465452	5.43465247377201	0.0601337081638706	0.840790409159025	0.939428850539057
Merged-chr15-76626135-4	chr15	76626044	76626244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305668)	promoter-TSS (NM_001305668)	-60.0	NM_001305668	66914.0	Mm.30028	NM_025842	ENSMUSG00000115987	Vps28	1110014J03Rik|CIIA|D730005C08Rik	vacuolar protein sorting 28	protein-coding	5.83444279831657	5.83034086262464	5.15108931617403	5.52375722066775	5.88337144624276	6.25812711121639	5.63409839826724	5.89857205997263	0.526146057208733	0.0776758428891679	0.301400393644139
Merged-chr11-121793707-4	chr11	121793614	121793814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-36504.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	6.13300973007773	6.4460407024341	5.79836306430115	5.5750050676008	5.57693202562642	6.0439604829889	5.64314932147352	4.98788861584516	-0.672262657879329	0.0550780538860377	0.245290590480757
Merged-chr11-49100609-4	chr11	49100517	49100717	+	938.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	13140.0	NM_146337	258334.0	Mm.390388	NM_146337	ENSMUSG00000047511	Olfr1396	MOR276-2	olfactory receptor 1396	protein-coding	4.69855861819186	4.42362468559153	4.88124776658919	4.77567367124698	4.92621253835734	4.94715086432317	4.67738833878489	4.61564231645239	0.201055453098088	0.567090300385232	0.808122532096819
Merged-chr7-34234140-4	chr7	34233992	34234192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3756.0	NM_008155	14751.0	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	7.53632010614	7.32076165130441	7.38034348656559	7.41344041591924	7.0496701365754	7.30763834920309	7.41990280300992	7.20670862078987	-0.225910724692083	0.224508422543296	0.532924865210742
Merged-chr17-84145538-4	chr17	84145440	84145640	+	723.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42407.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	3.70812302583401	3.5665976157058	3.80717474067931	3.4040791685342	3.74118210830888	3.53940204431031	3.58788599792593	3.93930590716288	0.296333624874734	0.545704039424353	0.795980613958413
Merged-chr12-17000873-3	chr12	17000775	17000975	+	786.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172574)	promoter-TSS (NM_172574)	-757.0	NM_172574	217430.0	Mm.379451	NM_172574	ENSMUSG00000045679	Pqlc3	C78076|E030024M05Rik	PQ loop repeat containing	protein-coding	4.45852810894619	3.9561461298639	3.69468925056767	3.88379370732274	3.87802686533005	3.81502109359672	3.49663135206881	3.85613357289048	-0.708287232793171	0.156342973217234	0.442219656874513
Merged-chr2-94010775-4	chr2	94010658	94010858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026944)	promoter-TSS (NM_026944)	-28.0	NM_026944	69113.0	Mm.272498	NM_026944	ENSMUSG00000040174	Alkbh3	1700108H04Rik|1810020C19Rik|Abh3|mABH3	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase	protein-coding	6.53879472615797	6.66320212218422	6.77155566933489	6.56319372075761	6.83321987783087	6.71702189241298	6.85748538813075	6.83529028931379	0.259654004501691	0.191523194463082	0.490934932097934
Merged-chr10-57731822-4	chr10	57731722	57731922	+	965.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039050, intron 4 of 4)	intron (NM_001039050, intron 4 of 4)	-53101.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	4.55875761941284	4.36044252949461	4.26976799761446	4.81643184887971	4.36960861371386	4.01977827735651	4.33997644891627	4.21994030197345	-0.670403717607921	0.103802936135482	0.354131000344493
Merged-chr3-21991897-4	chr3	21991801	21992001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84751.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	6.07911191358806	6.26617908556787	6.4828660833969	6.60924759434169	6.63152018847808	6.23581411396839	6.52880347727173	6.33964256617321	0.0916308573044504	0.706250061147809	0.881963807544825
Merged-chr1-164366965-2	chr1	164366865	164367065	+	925.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_138314, intron 9 of 13)	intron (NM_138314, intron 9 of 13)	59293.0	NM_138314	171567.0	Mm.219428	NM_138314	ENSMUSG00000026575	Nme7	D530024H21Rik|Nm23-M7|Nm23-r7	NME/NM23 family member 7	protein-coding	3.05729038476813	3.29780972946584	3.19185028797142	3.25911665809618	3.50168538116049	3.36702437252971	3.69341275818609	3.36903784580782	0.981561941084927	0.0644044833505898	0.269640182061817
Merged-chr2-124299055-4	chr2	124299004	124299204	+	967.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 3 of 20)	intron (NM_001290997, intron 3 of 20)	-76746.0	NR_040612	75946.0	Mm.415059	NR_040612	ENSMUSG00000086954	4930583P06Rik	-	RIKEN cDNA 4930583P06 gene	ncRNA	4.54581585431928	4.31401649817961	4.79660369833487	4.95405687621903	4.18666488299711	4.41341385098162	4.16662161419329	4.41933729967131	-0.900209898295686	0.0250116554479973	0.148494838863375
Merged-chr4-137994756-4	chr4	137994646	137994846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256195, intron 2 of 34)	intron (NM_001256195, intron 2 of 34)	1290.0	NM_172703	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	5.49262580798179	5.70281927663017	5.40814097592313	5.69081100571107	5.46938556869396	5.17661575727813	5.41017840210872	5.51694461187995	-0.322333977991528	0.25099697001984	0.562234630670233
Merged-chr9-94605146-4	chr9	94605050	94605250	+	980.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64742.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	5.23028596665954	5.24542705982283	5.08998709836003	5.49084120754189	5.57708906061335	5.53376347120315	5.52645469356302	5.82826375119506	0.56993952981537	0.0496300398162381	0.230693959647359
Merged-chr18-44608177-3	chr18	44608082	44608282	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-53483.0	NR_026853	626275.0	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	4.94064258715966	5.21995627498538	5.38179425217364	5.59635120289125	3.72470360136364	4.23146560451142	4.35357745509221	3.75147702290756	-3.01495321539479	4.80781554704862e-11	3.86819719576213e-09
Merged-chr13-52062110-4	chr13	52061998	52062198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-34643.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	6.26912571634174	6.44586291513504	6.0922891255663	5.83059838715745	6.24615835899098	6.33031531679223	6.42505985525965	5.85583480313478	0.0973470714767614	0.715939442073173	0.886371813543908
Merged-chr17-46751613-4	chr17	46751515	46751715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028065, intron 1 of 5)	intron (NM_028065, intron 1 of 5)	599.0	NM_001305989	72029.0	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	6.86555325493904	7.05091475132795	6.43265040872536	7.2083390782995	7.01723953627885	6.77244672019027	6.88496574244654	6.95361503290597	-0.032212765610234	0.890061739177055	0.958844074476467
Merged-chr11-83616765-4	chr11	83616658	83616858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 5 of 8)	intron (NR_036453, intron 5 of 8)	-23671.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	6.849236194594	6.84732391814562	7.23294378115289	7.247053120552	5.89478709520892	6.18398530546065	6.61699104570494	6.4642567861023	-1.08338669326384	1.73215120429008e-05	0.000449645479832835
Merged-chr7-105640413-4	chr7	105640319	105640519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029802)	promoter-TSS (NM_029802)	-3.0	NM_029802	76932.0	Mm.41637	NM_029802	ENSMUSG00000030881	Arfip2	2310002N04Rik|POR|Por1	ADP-ribosylation factor interacting protein 2	protein-coding	8.45326713958111	8.45706435616065	8.37091633360285	8.57567523583329	8.50659830002662	8.53768391228818	8.4937587620307	8.34368323234905	0.00223966932086792	0.988134663780755	0.995370064932717
Merged-chr1-152779238-4	chr1	152779152	152779352	+	973.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12710.0	NM_026369	67771.0	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	4.5750377054636	4.99510163831643	4.24370211809901	4.45895990197205	4.73923117851309	4.83029646744146	4.88221760167557	4.61403662870923	0.365609891170672	0.3339502699764	0.644704265436674
Merged-chr17-23874116-3	chr17	23874018	23874218	+	655.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6046.0	NM_020487	57256.0	Mm.386785	NM_020487	ENSMUSG00000024116	Prss21	1700023E12Rik|TESP5|mT4|testisin	protease, serine 21	protein-coding	3.22992969761321	3.42901748445335	3.16360136182928	2.91658731513076	3.73502543933577	3.5860744353805	3.5066684613008	3.61982830468272	1.51703744850725	0.004837956602469	0.0463848212563498
Merged-chr5-74705268-3	chr5	74705170	74705370	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2367.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	5.23895179058022	5.61215914443536	5.15926144159583	5.15199903795936	3.97417110552459	4.17841423334373	3.89563134406715	4.10337995614284	-2.96521532458035	3.029650159186e-12	2.99094963496117e-10
Merged-chr11-115700426-4	chr11	115700327	115700527	+	965.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313937)	promoter-TSS (NM_001313937)	-499.0	NM_001313936	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	5.42534024309691	5.45007950103322	5.11346231604013	5.08603196398695	5.52256469150545	5.67895096956281	5.37118251388193	5.03725432542815	0.276385103051768	0.376037122936436	0.678890741477518
Merged-chr8-79941197-3	chr8	79941095	79941295	+	910.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116813.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	4.39480045836157	4.20640801211997	4.47219261761743	4.50681216028569	3.94313686015881	3.86174207357392	4.33521515081501	4.08093534578516	-0.854310784035258	0.0412445606849475	0.205489326117484
Merged-chr16-10838670-4	chr16	10838574	10838774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162932, intron 1 of 1)	intron (NM_001162932, intron 1 of 1)	3615.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	7.36980275573513	7.42600612414922	7.55672712426887	7.3713872696561	7.23930251930595	7.45473808142641	7.44873944694011	7.08704477807529	-0.156609405565271	0.399237746460761	0.697288631090116
Merged-chr13-61241755-4	chr13	61241649	61241849	+	823.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13599.0	NM_019541	56094.0	Mm.342861	NM_019541	ENSMUSG00000057446	Cts8	CTS2|Epcs68|Epcs70	cathepsin 8	protein-coding	3.94120248668513	4.02299281950633	3.78762647832137	3.79858871705152	3.98176595398516	3.96112430200074	3.82561784867627	4.11910844135644	0.251823610899576	0.559839115701861	0.804083869739351
Merged-chr2-110205097-3	chr2	110204962	110205162	+	880.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100663.0	NM_130452	170442.0	Mm.27335	NM_130452	ENSMUSG00000041660	Bbox1	AI874739	butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)	protein-coding	3.33556037299915	3.17382247622275	3.39504021540387	3.5268445615133	3.80363732504804	3.44906554897151	3.32420709653768	3.60532899361876	0.636277585219178	0.233850113539918	0.543552794685623
Merged-chr15-61935704-1	chr15	61935604	61935804	+	825.0	f0_balb.idr	Intergenic	Lx8|LINE|L1	-49637.0	NM_001177354	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	3.23875486439256	3.12613601074309	3.64170773950153	3.56389664276038	2.77739525816357	3.01547450447211	3.22689885676695	3.35043637882941	-1.15493062635567	0.069856476717139	0.282883609287498
Merged-chr5-121384622-2	chr5	121384522	121384722	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172275, intron 1 of 11)	L1MC4|LINE|L1	787.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	2.89555833216979	2.74598880276632	3.19029215974207	2.57087963143499	3.00295004090096	3.00674671242835	3.12322186909963	3.13465806080581	0.878502124022998	0.168530344170057	0.460722101919594
Merged-chr1-138550412-4	chr1	138550327	138550527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 2 of 9)	RLTR26_Mus|LTR|ERVK	69330.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	5.53364281446098	5.32616123105684	5.56063741207622	5.77958601848419	5.49684345632567	5.12643262233284	5.42579679601283	5.39174553609946	-0.349081406131352	0.233163690931036	0.542790370119709
Merged-chr2-73553588-4	chr2	73553485	73553685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24098.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	5.25291826395099	4.90297255974609	5.10927081196507	4.81137333494441	4.95061762234439	5.0118885434041	4.36996906723643	5.01033697708353	-0.309781224577732	0.391223798723264	0.691040061984853
Merged-chr10-117719138-4	chr10	117719025	117719225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-8367.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	7.21176707267874	7.3964181455304	6.59504844429108	6.48416551377105	7.19508708855849	7.4311610192207	6.78231710227126	7.03781556341636	0.215681579580941	0.431688541778237	0.721803117576536
Merged-chr1-165210166-2	chr1	165210066	165210266	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR4_I|LTR|ERVK	-15728.0	NR_151712	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	2.97109593121615	2.6341973370846	2.6535747417669	2.30115153089676	2.54157732195828	2.83536251161293	2.77930119757121	3.22468458214778	0.93658888875617	0.202258492118472	0.504732469151556
Merged-chr15-8634979-4	chr15	8634879	8635079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_148938, exon 10 of 10)	3' UTR (NM_148938, exon 10 of 10)	75828.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	5.77842786065706	5.82505416794782	5.20727756258003	6.04872735915513	6.14259271957393	6.12407210883756	6.31706096552926	6.37749048086296	0.736579589645063	0.00980090042030212	0.0777589356609457
Merged-chr5-92254695-4	chr5	92254597	92254797	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011148, intron 1 of 16)	intron (NM_011148, intron 1 of 16)	1581.0	NM_011148	19023.0	Mm.87155	NM_011148	ENSMUSG00000029410	Ppef2	-	protein phosphatase, EF hand calcium-binding domain 2	protein-coding	5.43764134130332	5.8982098531562	5.17037058235357	5.74325448766627	4.53113969121831	4.88292775855697	5.20887390774286	5.06339858468211	-1.22627789437353	0.000470167813978599	0.00734710753703242
Merged-chr11-46810715-4	chr11	46810603	46810803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178759)	promoter-TSS (NM_178759)	-96.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	7.2324433564238	7.25824151313773	7.07228989854715	7.31645127928345	7.14939006372415	7.29752114586892	7.30090041930646	7.02987779557478	-0.0451408055270982	0.808820748395258	0.92615112212231
Merged-chr4-116557082-4	chr4	116556980	116557180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029868)	promoter-TSS (NM_029868)	-647.0	NM_029868	77110.0	Mm.41715	NM_029868	ENSMUSG00000034042	Gpbp1l1	5330440M15Rik|BC002292	GC-rich promoter binding protein 1-like 1	protein-coding	5.79840344789464	6.05437618883241	6.07640696491405	5.92404798213982	6.42027340020682	6.2512640341836	5.95973654449572	6.21008695626472	0.409750501286083	0.0919500047755445	0.331623169614429
Merged-chr13-102021842-3	chr13	102021737	102021937	+	872.1333619999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-253620.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	3.82659278092677	3.6290728095151	3.58839758278936	3.33563348628851	4.02388881918737	4.20405452324398	4.18496844746718	4.52516842002506	1.83804228324748	6.52193797349801e-05	0.00141445771790254
Merged-chr17-24960822-4	chr17	24960693	24960893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198937)	promoter-TSS (NM_198937)	-170.0	NM_198937	52009.0	Mm.371601	NM_198937	ENSMUSG00000024165	Jpt2	2810430B18Rik|AL022629|C16orf34|D17Ertd441e|Hn1l	Jupiter microtubule associated homolog 2	protein-coding	8.74610940350445	8.65033871427607	8.57269067551073	8.70247156759618	8.46803280200083	8.79216515536245	8.50010317063039	8.27235427766349	-0.189441312993717	0.255885165142955	0.567467793489678
Merged-chr7-43546196-4	chr7	43546096	43546296	+	964.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13025.0	NM_021293	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	4.81412580593577	4.95846810153988	4.54115192876415	4.29428726158857	4.78281794498801	5.08659737190781	4.28504938486944	4.70153655091246	0.157523831897063	0.697790369134883	0.878007754859584
Merged-chr19-12483791-3	chr19	12483703	12483903	+	734.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172442, intron 4 of 8)	intron (NM_172442, intron 4 of 8)	18193.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	3.53773344075881	3.11380461128253	3.66674163648538	3.1941695173795	2.84791837369632	2.94701681140211	2.9723817999656	2.98054144838109	-1.91223943015858	0.00274835362029027	0.0298072622792383
Merged-chr16-93816015-3	chr16	93815937	93816137	+	897.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-16084.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	4.13499868254955	4.01045237849304	4.18197682856812	3.81316574322489	4.13786282760062	4.21323335236539	4.20760296124677	4.53372249573767	0.6433724707006	0.122093474650107	0.387242288214953
Merged-chr9-32676739-4	chr9	32676638	32676838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19304.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	6.23428740579053	6.3875766085542	6.00665799209467	6.86991049852368	5.90368690723823	5.85152446338846	6.10503973923565	6.19232071223338	-0.636158472437848	0.0235454523838886	0.142512054016395
Merged-chr19-40650286-4	chr19	40650194	40650394	+	983.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	L1MC3|LINE|L1	-9476.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	5.41719210967901	5.0891457826885	5.47015459573453	5.52434000208463	5.10646207620776	4.86794933992313	5.22166949848136	4.93618962510259	-0.642504945421165	0.0398752731662774	0.201371672085373
Merged-chr9-16229106-4	chr9	16229022	16229222	+	949.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	149109.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	4.58850076414426	4.35572141446824	4.22877576236584	4.65726367787744	4.99873436727576	4.55179395056937	4.67948707425234	4.32602501098577	0.425292359466428	0.284457158906927	0.596324963525583
Merged-chr3-148221051-4	chr3	148220932	148221132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	733603.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	8.4438697768487	8.50576575397656	8.45514382766879	8.6360116090313	7.97313374753298	8.16491161213951	8.12890864182922	8.14333382023983	-0.530550996886816	0.000610209783531202	0.00905632238990147
Merged-chr2-148527216-4	chr2	148527102	148527302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83667.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	7.0253486166118	6.40200410663806	7.1610313639221	7.15723330009704	6.51201105943365	6.64861526912952	6.88018978506853	6.92323489446654	-0.319494576436043	0.196841624705235	0.498044575746264
Merged-chr5-30649478-4	chr5	30649379	30649579	+	817.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175675, intron 1 of 5)	intron (NM_175675, intron 1 of 5)	1540.0	NM_175675	74919.0	Mm.247985	NM_175675	ENSMUSG00000029175	Slc35f6	4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9	solute carrier family 35, member F6	protein-coding	3.97683970380895	3.98420380507639	3.92787274566019	3.99575525363832	3.80594281089301	4.14826338163896	4.05317661099013	3.97506856613561	0.0534444808145873	0.899837668449081	0.962818053944307
Merged-chr7-142403830-4	chr7	142403738	142403938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15968.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	7.85211168374828	7.85486121762362	7.94741510065683	8.23147818189352	7.82524084279886	7.59586479719907	7.92988268614121	8.0988834777974	-0.147617931052631	0.438826698080719	0.726732530107543
Merged-chr16-57482445-4	chr16	57482350	57482550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-66792.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.92228650362447	7.01125892785004	7.07483283557186	7.16485209035112	7.27989954721955	6.86652175362366	7.10827635644415	6.9319271092643	0.0189683160931489	0.924853167939738	0.972242873959408
Merged-chr1-148904286-4	chr1	148904180	148904380	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1018159.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	5.43341056858582	5.73039089069232	5.91493373749017	5.92707554269801	5.7935881831117	5.61173878432305	5.63072535217038	5.39950065585491	-0.253461706585073	0.364451478537365	0.669279814395716
Merged-chr7-98309542-4	chr7	98309440	98309640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025408)	promoter-TSS (NM_025408)	2.0	NM_001360616	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	7.31201557489798	7.44823737806121	6.88943265109389	7.26524332956251	7.35805298366086	7.17735389830322	7.30717070094634	7.37808004076861	0.0822794144968901	0.677463189839599	0.867692669046547
Merged-chr4-155669473-6	chr4	155669328	155669528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256107)	promoter-TSS (NM_001256107)	-174.0	NM_001256107	76580.0	Mm.235738	NM_145124	ENSMUSG00000029060	Mib2	2210008I11Rik|Zzank1|skd	mindbomb E3 ubiquitin protein ligase 2	protein-coding	7.30638620159868	7.35890495557979	7.56726061204376	6.60458418843098	7.01115763354734	7.64843753689545	6.98377847480773	7.48436373712569	0.0848918285458942	0.752306696040461	0.902425600431109
Merged-chr7-128460524-6	chr7	128460472	128460672	+	892.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347641, intron 1 of 12)	CpG	941.0	NM_009383	21843.0	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	3.39884857249663	3.38980251290448	3.56874495034823	3.34363915266372	3.65963982829032	3.83522486017391	3.6549888697045	3.45627050948148	0.77999817535538	0.110206760010511	0.366573710612399
Merged-chr17-73107963-4	chr17	73107866	73108066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177968)	promoter-TSS (NM_001177968)	-19.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	7.95553650363866	7.83739662164904	7.78464444339714	8.00496223248769	8.14511059420201	8.127409397297	8.30545259515915	7.73860587453505	0.250224852269546	0.171509576381338	0.464854477457024
Merged-chr12-76177210-1	chr12	76177110	76177310	+	730.5	f0_balb.idr	promoter-TSS (NR_104386)	promoter-TSS (NR_104386)	49.0	NM_010157	13983.0	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	2.81608089050814	3.22536782209249	3.36040234725326	3.19586969966219	2.94952581746379	3.19674082865473	3.07538934201339	3.14439998016882	-0.294178535451759	0.62257586353007	0.838524208867069
Merged-chr5-5184397-4	chr5	5184307	5184507	+	946.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 5 of 14)	L1M4a1|LINE|L1	81661.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	4.97175150433696	4.71619940192853	5.32686676987069	5.5516592341064	4.59358304511124	4.71189749250363	4.60105020060346	4.82512696568312	-1.02884645929734	0.00558507303019853	0.0515370109729677
Merged-chr2-148500570-5	chr2	148500477	148500677	+	900.8466800000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57042.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	3.75596031496687	3.29721146091446	4.08262169281033	4.06879382455217	3.83250705864736	3.82153035006472	3.88960602469998	3.70028062130805	-0.0905528855299403	0.861699240164236	0.947809474991843
Merged-chr14-19971030-4	chr14	19970933	19971133	+	981.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285908, intron 1 of 3)	intron (NM_001285908, intron 1 of 3)	5660.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	6.01831523175942	5.06977991940065	5.13849779654906	5.90788449237517	5.58421594440641	5.55358552642236	5.7208171416733	5.40317263393847	-0.0737798734004967	0.831220688044012	0.935322338382222
Merged-chr11-48871464-4	chr11	48871386	48871586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008326)	promoter-TSS (NM_008326)	-66.0	NM_008326	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	5.24238900997606	5.67384887684894	5.24327195864584	5.53777083023874	5.96269854212552	5.48737359747868	5.46385150107256	5.71849452458818	0.403282894855504	0.174459864911441	0.468918013274924
Merged-chr5-90685205-1	chr5	90685105	90685305	+	816.666687	f0_balb.idr	Intergenic	Intergenic	-44678.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	3.13893887204615	3.36290106449051	3.64282039210795	3.65079326120537	3.10299620189528	2.97584159596275	2.85948253412357	2.78847362099881	-2.17592725584862	0.00130627308221481	0.0167048529858009
Merged-chr2-102850025-3	chr2	102849937	102850137	+	737.81665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009851, intron 5 of 18)	intron (NM_009851, intron 5 of 18)	51628.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.10132194598525	3.80377768606234	4.0126123819395	4.73600165420138	3.65405681180036	3.88015308245441	3.50009371816997	3.44153421437262	-1.7104614990623	0.00153580329875768	0.0190348150796226
Merged-chr5-148400334-4	chr5	148400246	148400446	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007513)	promoter-TSS (NM_007513)	-442.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	4.43533830825815	4.52854417886489	4.73651030163356	4.55017067648644	4.89512095504816	4.56885937869909	4.85742443393272	5.35470449468896	0.797565185470806	0.0288140376593085	0.163084795368314
Merged-chr2-168080826-4	chr2	168080738	168080938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021409)	promoter-TSS (NM_021409)	-166.0	NM_021409	58220.0	Mm.292834	NM_021409	ENSMUSG00000044641	Pard6b	AV025615|Par6b	par-6 family cell polarity regulator beta	protein-coding	5.92870332659144	6.07417210281489	5.92974577927216	6.04113067553404	5.9464533545982	5.86033866917602	5.80736380498834	5.85655317512625	-0.204132472690234	0.39293376125889	0.692205902019298
Merged-chr14-70850460-3	chr14	70850377	70850577	+	796.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2456.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	3.40999446515851	3.35788802916059	3.30815818132349	3.51041023477463	2.9968830185943	2.97568450475303	2.86117668723342	3.07346231716462	-1.76206557626312	0.00342089865830259	0.035397026544457
Merged-chr18-80005118-4	chr18	80005017	80005217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41778.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	5.48308997230722	5.48938108525064	5.26918193955342	5.55170829667317	5.61072970495636	5.4798188728261	6.08283612204029	5.23176989791248	0.311300504152396	0.312684229008645	0.624578922877903
Merged-chr4-108847911-4	chr4	108847870	108848070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029571, exon 1 of 1)	exon (NM_029571, exon 1 of 1)	113.0	NM_029571	100087.0	Mm.440007	NM_029571	ENSMUSG00000073775	Kti12	1110001A12Rik|AI326810|AU014758	KTI12 homolog, chromatin associated	protein-coding	5.40875676436691	5.31062912795588	6.13941920869699	5.29830642819224	5.28931559272351	5.5852140636703	5.3532414072205	4.99885062605649	-0.454821694983373	0.18900160795657	0.48779670955222
Merged-chr3-65949675-4	chr3	65949551	65949751	+	808.891663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019937, intron 5 of 10)	intron (NM_019937, intron 5 of 10)	8598.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	4.8339392965674	4.38951516060692	4.18698795766214	4.77419885550747	4.18881607223732	4.83555714740732	4.06171416717298	4.58748902337901	-0.288007815280798	0.513511436023053	0.776529222534202
Merged-chr9-105780189-2	chr9	105780083	105780283	+	914.083374	f0_balb.idr|f1_balb.idr	intron (NM_172927, intron 6 of 7)	LTR16A1|LTR|ERVL	29465.0	NM_172927	245026.0	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	3.68220696461334	4.11866505412208	3.94314365699691	3.76605107863891	2.74639762757587	2.96039882096652	3.00051789330872	3.00793687850395	-5.28930558476858	2.11574801783413e-07	8.4747793000234e-06
Merged-chr15-59430560-3	chr15	59430447	59430647	+	989.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 3 of 4)	intron (NM_001164604, intron 3 of 4)	56349.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	4.28243460980953	4.47026390616412	4.16312383695357	4.3891339950369	3.4139365798278	3.5782214392895	3.51478296744965	3.52514814190802	-2.60096898904216	3.00672429671338e-07	1.16566246577212e-05
Merged-chr17-46496766-4	chr17	46496653	46496853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207161)	promoter-TSS (NM_207161)	-36.0	NM_207161	381101.0	Mm.35801	NM_207161	ENSMUSG00000040658	Dnph1	C76683|Rcl	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding	5.87805821964409	5.93360527281421	5.85639367261521	5.95788217109027	5.50710552090153	5.91159382260371	5.73207172016512	5.65441362346146	-0.350095259600524	0.169154406038078	0.461676496267707
Merged-chr8-27253821-4	chr8	27253678	27253878	+	956.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6549.0	NM_007918	13685.0	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	4.75316103922271	3.853855292768	4.10740117909254	4.53708013481447	4.6236039861818	4.28589781743926	4.23750278698992	4.38678637965327	0.0777759202633053	0.863434606434312	0.948591391532472
Merged-chr1-132067938-3	chr1	132067873	132068073	+	606.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172510)	promoter-TSS (NM_172510)	89.0	NM_172510	213006.0	Mm.208445	NM_172510	ENSMUSG00000059149	Mfsd4a	A230072B04|A930031D07Rik|AI850289|Mfsd4	major facilitator superfamily domain containing 4A	protein-coding	3.76199146815973	3.65839499965074	3.66097565703835	3.67454069840336	3.5225498359831	3.72395792853832	3.7938857205399	3.54888266152196	-0.127071640956021	0.786483665074663	0.91697434709825
Merged-chr12-85602922-4	chr12	85602833	85603033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 1 of 3)	MIR|SINE|MIR	2915.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	5.8972477197775	6.09474749603517	6.74439646598449	6.63126880030141	6.20227969021765	5.54410745467245	6.07116312261741	6.07700265923114	-0.597757022273919	0.0476162969902776	0.225051819619586
Merged-chr11-53299858-4	chr11	53299756	53299956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008300, intron 1 of 18)	CpG	623.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	6.21833773950613	6.32257068043319	6.38596242103303	6.09081866415684	6.28559369274561	6.06186868743782	6.48393947351124	6.64386488416851	0.206847781799428	0.390531423979691	0.69058015678842
Merged-chr8-25012951-4	chr8	25012858	25013058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270996, intron 1 of 21)	PB1D9|SINE|Alu	3964.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	5.73409658960914	5.63905455597151	5.45997394821347	5.6986053259812	5.91828518093446	5.60732150145987	5.90970438622896	5.95665280826903	0.356745448181441	0.167313934817078	0.458928175229089
Merged-chr8-105860510-4	chr8	105860424	105860624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357229)	promoter-TSS (NM_001357229)	-9.0	NM_026532	68051.0	Mm.455474	NM_026532	ENSMUSG00000008450	Nutf2	2700067I02Rik|AI115459|AI413596|AW546000|Ntf2|Ntf3|PP15	nuclear transport factor 2	protein-coding	8.46402212238016	8.26109474289365	8.21189174347885	8.5012793372947	8.43739450298008	8.60263942613737	8.41113397361013	8.49915375680561	0.148095042276762	0.35148471789746	0.658893189148013
Merged-chr8-111522205-4	chr8	111522091	111522291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176923)	promoter-TSS (NM_176923)	-84.0	NM_176923	319481.0	Mm.247294	NM_176923	ENSMUSG00000031959	Wdr59	5430401O09Rik|Cdw12	WD repeat domain 59	protein-coding	8.01210187156295	8.21197880162224	8.23960340915158	8.07163214914661	8.19729061205829	8.26459339431122	8.29992401731912	8.0880822969245	0.101193278112687	0.522877306983604	0.782230283620515
Merged-chr1-78488100-4	chr1	78487988	78488188	+	624.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001278075, intron 1 of 17)	intron (NM_001278075, intron 1 of 17)	809.0	NR_102758	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	3.15349031906138	2.94236031851535	3.43806046233977	3.40770808082353	3.41218760213187	3.26447546539651	3.31884885190376	3.38412515206906	0.323227353399518	0.566775916178611	0.807998216220581
Merged-chr8-108182980-4	chr8	108182867	108183067	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	401710.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	4.32568262833346	4.63394966187045	4.74947166699506	4.632569079587	4.36754775246193	4.5061728414332	4.7961027328665	5.03428797749689	0.213765808690634	0.577804295263058	0.814325946590024
Merged-chr13-77708686-4	chr13	77708587	77708787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163419)	promoter-TSS (NM_001163419)	-3.0	NM_001163420	68675.0	Mm.343005	NM_138312	ENSMUSG00000064138	Fam172a	1110033M05Rik|2610318O14Rik|53-E6|9430037D06Rik|AF064782|pEN87	family with sequence similarity 172, member A	protein-coding	7.19824987993556	7.00595944457201	6.97100571544962	7.0568574038079	7.37016050093691	7.08018829384095	7.32752164171334	7.28971415052523	0.296870971200162	0.111011446020658	0.368126664964881
Merged-chr10-93081696-4	chr10	93081646	93081846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347060)	promoter-TSS (NM_001347060)	-150.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	5.27675645318112	5.33165454860644	5.10276441480371	5.19216620664492	5.64842096706238	5.97762132623391	5.8181980763281	5.42793675936195	0.867133478656734	0.0022786418211531	0.0258761081984455
Merged-chr2-164457035-4	chr2	164456961	164457161	+	997.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3910.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	5.23993395459088	5.9105731070907	5.66103260639642	4.40499584215339	5.58486375049355	5.78643953070676	5.39822841122052	5.16923332259127	0.140842082361878	0.73294450999011	0.894275725540574
Merged-chr3-63976148-4	chr3	63976065	63976265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033300)	promoter-TSS (NM_001033300)	22.0	NM_001033300	229363.0	Mm.331051	NM_001033300	ENSMUSG00000027823	Gmps	670032|AA591640|AI047208|Gm9479	guanine monophosphate synthetase	protein-coding	7.27595454901957	7.21282799523344	7.39140219462242	7.4755754728272	7.35689356248318	7.38770853695134	7.74259718264027	7.42532827523184	0.181914262376929	0.338330820529371	0.647959142077709
Merged-chr8-120108045-4	chr8	120107954	120108154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5A|LINE|L1	-6098.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	6.19940614696637	6.24488072799479	6.25791231068933	6.52954853335193	6.0472764808505	5.70205778503042	6.57975571606954	6.07285588747931	-0.278781233451922	0.305338352076879	0.617767504120979
Merged-chr14-19985335-4	chr14	19985272	19985472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8123.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	7.256099079296	6.58798909132345	6.74430271930577	7.49632946696407	6.68485760160204	6.65572897598263	7.00334994792108	6.93469358215469	-0.360979690294361	0.168738714290554	0.461114636790699
Merged-chr9-59657340-5	chr9	59657247	59657447	+	992.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253883, intron 1 of 10)	CpG	979.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	4.7394275614393	4.41906941138713	4.81888091069597	4.67167067963275	5.22849544462964	5.29393545357999	4.83319964933226	5.14919163527579	0.93855393953873	0.00490895255205357	0.0469138471673766
Merged-chr17-27907744-4	chr17	27907623	27907823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026836, exon 2 of 6)	5' UTR (NM_026836, exon 2 of 6)	1519.0	NM_026836	68776.0	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	5.46540771976439	5.8096622638008	5.40611372037607	5.57872871595497	5.72572974937572	5.95054563646524	5.49620216819339	5.4915985152413	0.169070399019997	0.547351416919056	0.796783882293747
Merged-chr1-161329421-2	chr1	161329335	161329535	+	602.833374	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66003.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	3.36026195578937	3.13674871146666	3.64833574700694	3.4110746217586	3.85097039596449	3.81890747539429	3.63301277357259	3.745369439627	1.1601140131807	0.0210269998427208	0.132426191984164
Merged-chr11-120040619-4	chr11	120040517	120040717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	1164.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	6.36178558928787	6.42534283549278	5.86417460874587	6.53298132559615	6.2748493798304	6.0428440509732	5.80892174066331	6.26953826141117	-0.324651774319694	0.221769988755262	0.529852511735057
Merged-chr11-44437963-4	chr11	44437863	44438063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32585.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	7.26354191470065	7.08906179009228	6.93088125380856	7.30151015159301	7.12344966326698	7.02409083507346	7.49928473111766	7.09202347061731	0.0496935293016091	0.810710532644729	0.926854276252049
Merged-chr15-57695801-7	chr15	57695755	57695955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 1 of 3)	CpG	1188.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	5.37661552821008	5.26081998458814	5.37753899997916	5.17147524378588	5.27315575774365	5.73917443067356	5.56574540378332	5.56502926787198	0.439580732451657	0.12580478299591	0.393888389586782
Merged-chr9-35107351-4	chr9	35107263	35107463	+	897.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-9365.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	4.09527094240858	4.43143597995875	4.53257297461986	4.38215293760032	4.44664748959956	4.16712649354191	4.3555440437642	4.19338440203872	-0.161620531936144	0.682242080225366	0.869682098720609
Merged-chr8-84501765-4	chr8	84501656	84501856	+	968.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 3 of 47)	intron (NM_001252060, intron 3 of 47)	86392.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	6.2586902876646	6.08944871736355	6.19227640983716	6.49776634419736	4.59640410696989	5.37455991944383	4.91673204838885	5.54611427258606	-1.91074164492392	7.09695570220807e-09	3.89779482968726e-07
Merged-chr15-59643098-4	chr15	59642990	59643190	+	993.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5564.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	5.2196938410969	5.32294366693127	5.02368356082821	5.51617905259527	4.90815190592193	5.01161209981171	5.03425688070712	5.15474878309888	-0.521257920410821	0.0974333725167494	0.342005234621681
Merged-chr4-129031615-4	chr4	129031516	129031716	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26655.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	5.26777679254527	5.29714625838566	5.46165055868876	4.69364020357184	5.31970824804695	5.21719114093959	5.15047136527588	5.07253946178172	0.00900791976412027	0.978891749161098	0.992533278305621
Merged-chr10-68434200-3	chr10	68434104	68434304	+	913.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028491, intron 7 of 7)	intron (NM_028491, intron 7 of 7)	107671.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	3.30439103912088	3.28836268026973	4.15266599516176	3.57723526259312	3.19626278493394	2.99903306070519	3.16758181117113	2.96368866828867	-1.98136005029041	0.00234516095988782	0.0264374741786277
Merged-chr4-58911223-2	chr4	58911123	58911323	+	807.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355697, intron 1 of 49)	intron (NM_001355697, intron 1 of 49)	707.0	NM_001355697	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	2.91089761859066	3.09009078690012	2.84200176265586	2.96674398720389	3.1067451522868	3.26836016764986	3.08787626745297	3.20957094885837	0.842615767913516	0.139268711792193	0.414926442453497
Merged-chr11-78807591-3	chr11	78807496	78807696	+	799.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-18999.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	4.09185680137772	3.59485161127388	3.63137799536157	3.84078199607573	3.41076462816301	3.50378209044657	3.72245606174191	3.8341396473635	-0.550094594342554	0.273925419127083	0.585640747545929
Merged-chr11-58636761-4	chr11	58636652	58636852	+	974.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3713.0	NM_001039047	216781.0	Mm.339507	NM_001039047	ENSMUSG00000037124	Trim58	Gm16|Gm1783	tripartite motif-containing 58	protein-coding	5.15971973839308	4.81337540101015	4.61000410119155	4.67385275970008	5.00282262854539	4.86828370802599	4.74910961902149	4.56339175452468	-0.0185578913349226	0.958658852528295	0.985248919859626
Merged-chr12-79208911-4	chr12	79208788	79208988	+	880.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030017)	promoter-TSS (NM_030017)	-25.0	NM_001313971	77974.0	Mm.274373	NM_030017	ENSMUSG00000021123	Rdh12	-	retinol dehydrogenase 12	protein-coding	4.26169218562537	3.92442063999685	4.34143809512262	4.03367284994008	4.04673596213915	4.06122422219981	3.97364694448159	3.98788342727039	-0.32202418002206	0.447067224695375	0.732731538524767
Merged-chr1-57852873-4	chr1	57852754	57852954	+	918.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164566, intron 1 of 11)	intron (NM_001164566, intron 1 of 11)	7283.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	5.66243379627125	5.78503708757238	4.87919798753426	5.46513888935416	4.6085482164124	4.5605360264286	4.73522259920964	4.420531228408	-1.78226486031715	1.57835367647601e-06	5.29932246876821e-05
Merged-chr11-43653936-3	chr11	43653838	43654038	+	710.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-28060.0	NM_027557	70802.0	Mm.397449	NM_027557	ENSMUSG00000044950	Pwwp2a	4631424J17Rik|AI891583|AU024105|D930040F23Rik	PWWP domain containing 2A	protein-coding	3.58008601151344	3.92642403720934	3.58056461453988	3.53592677687562	3.76908426184496	3.58039987402758	3.67113572576555	3.4021880669001	-0.136595198823101	0.783989800181689	0.915909366736134
Merged-chr9-100439574-3	chr9	100439479	100439679	+	865.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46894.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	3.4431228870959	3.06863254570994	3.17126572027937	3.26382726521411	3.25871785670672	3.15315859926231	3.09886413679082	3.39166069520185	-0.0428325957977736	0.938342991597571	0.97762431825588
Merged-chr13-95797756-2	chr13	95797662	95797862	+	869.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 2 of 35)	intron (NM_027711, intron 2 of 35)	94160.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	2.3971535710343	2.42047756287157	2.47929482991968	2.3174516052344	3.11188317689158	3.06333204875781	3.09273314274927	2.82865017400021	3.37034721693512	2.79498913938968e-06	8.87748915451218e-05
Merged-chr11-83223496-4	chr11	83223380	83223580	+	970.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015519)	promoter-TSS (NR_015519)	-96.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	5.08207170533169	5.17930820497794	4.79954834511601	5.40504590746083	5.80300543358483	5.52039017159454	5.45866970338127	5.53457257785494	0.766611480640698	0.0146764313407147	0.103236852100082
Merged-chr8-33385642-4	chr8	33385542	33385742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098233)	promoter-TSS (NM_001098233)	-115.0	NM_011721	22427.0	Mm.228805	NM_011721	ENSMUSG00000031583	Wrn	AI846146	Werner syndrome RecQ like helicase	protein-coding	7.63393605174863	7.52819035643898	8.01463603737713	7.71017715959759	7.53560621138714	7.58938862844977	7.74972358276464	7.38606142100677	-0.211944082423786	0.267221518410542	0.578889139572816
Merged-chr6-120145642-4	chr6	120145527	120145727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-48196.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	6.3655663906757	6.3832004300014	6.43436244330666	6.63269856178649	5.85350257282643	6.18474868807719	6.12773436588105	6.0701479869225	-0.631707288639067	0.00667250385365591	0.0587325150007516
Merged-chr2-70842388-3	chr2	70842283	70842483	+	750.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16903.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	3.11169678105299	3.2366690359789	3.65615663649893	3.35257865928603	3.08968919577155	3.29020410659618	3.34466801750245	3.51370276723648	-0.139325670005469	0.804392737240831	0.924756680030242
Merged-chr10-77522138-4	chr10	77522033	77522233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6320.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	6.38273905879242	6.27903837904862	6.34867218579253	6.56495673379171	6.18587345299582	6.37348473199012	6.43464904649489	5.87441678458348	-0.263409738057442	0.274639174475189	0.586395867106146
Merged-chr5-151108703-3	chr5	151108626	151108826	+	876.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153382, intron 1 of 13)	intron (NR_153382, intron 1 of 13)	81467.0	NM_001163493	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	3.51278054911385	3.42918239178188	3.56531470440603	3.44465559315434	3.32400271202843	3.25909133242156	3.49912889135972	3.66113405411887	-0.144246159298822	0.777672469219719	0.913310927379065
Merged-chr5-92438333-3	chr5	92438228	92438428	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-3129.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	3.01057388383564	2.84875148970073	3.12669651117931	2.62554638596228	2.85429361700659	3.39956858262992	2.8069729321466	2.88273272473589	0.397871222069744	0.544131704778505	0.795111936790103
Merged-chr11-6526857-3	chr11	6526757	6526957	+	790.866638	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045893, intron 2 of 3)	B2_Mm2|SINE|B2	1903.0	NR_045893	100041286.0	Mm.459507	NR_045893	ENSMUSG00000085156	Snhg15	Gm11974	small nucleolar RNA host gene 15	ncRNA	3.5553505599019	3.96888741728277	3.2958754462424	3.11289042496512	3.94473721796556	3.89610753767726	3.89801586314226	3.77145646212173	1.07060020863446	0.0488983085071761	0.228636269798006
Merged-chr15-58249694-2	chr15	58249594	58249794	+	987.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34802.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	3.56673128398086	3.63789179494585	3.27930405298867	3.05260344096717	3.58537886871172	3.517910195927	3.44593861561364	3.61570862943499	0.494783851950682	0.360401342637825	0.665793074685122
Merged-chr1-23922417-4	chr1	23922325	23922525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028534)	promoter-TSS (NM_028534)	-44.0	NM_028534	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	7.28993723631236	7.16427215393139	6.84240869100035	6.86547624819498	7.1963179483846	7.16648166212342	7.1079874579527	6.40141960544711	-0.055133038442688	0.82271407929885	0.932185203682946
Merged-chr19-34288539-2	chr19	34288439	34288639	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2120.0	NM_007987	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	2.74251831903147	2.83101901211018	2.59678679726449	2.48247778346408	3.07153709808519	3.04725048333131	2.98233778466241	3.04879028406158	1.76775990994842	0.00501396751459368	0.0476614842042286
Merged-chr1-144295127-4	chr1	144295014	144295214	+	919.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46010.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	4.43240983207541	4.59927393495346	4.38774212311243	4.77769196546154	4.57617316973038	4.36929487484019	4.61680059353264	4.77857743822599	0.0382913591047823	0.91821135862405	0.969880930973352
Merged-chr3-144693290-4	chr3	144693172	144693372	+	970.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 9 of 10)	intron (NM_001282037, intron 9 of 10)	27063.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	5.02896944154543	4.73906810711462	5.25709355327308	5.39036237464681	5.03852983008408	5.23988762625989	5.28858464338138	5.31146012911997	0.140673753499863	0.669624021633572	0.86357079102718
Merged-chr5-31292562-2	chr5	31292462	31292662	+	954.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_022424, exon 7 of 7)	3' UTR (NM_022424, exon 7 of 7)	-1448.0	NM_026298	67661.0	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	3.50135198842927	3.26751734313822	3.7041470811242	3.13149894499622	3.20032614772593	3.23982101841254	3.5911385925194	3.91556869278111	0.344057465582667	0.554255622119029	0.800668944996456
Merged-chr2-71543140-4	chr2	71543047	71543247	+	957.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010054)	TTS (NM_010054)	3607.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	4.86428006732569	5.27363745460089	5.08546588719149	5.3733532540696	4.82243947632639	5.22637194395228	5.52988168397645	4.90125935022959	-0.0582561637624665	0.867487410562584	0.950331199983684
Merged-chr2-27427105-4	chr2	27426979	27427179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_133905, exon 1 of 30)	non-coding (NR_133905, exon 1 of 30)	529.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	7.27588305198857	7.16162709080471	6.9298822494229	7.18500705350949	7.50342541108891	7.13480184201197	7.34089112923871	7.15144383629416	0.207931127873826	0.290046028613055	0.602181375296017
Merged-chr2-142858968-4	chr2	142858856	142859056	+	870.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 3 of 26)	intron (NM_001355123, intron 3 of 26)	42508.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	4.11354080575862	3.67149758770717	4.32405510780547	4.53140185088614	3.68408735363301	3.80692688291244	4.09584834390392	4.15639499405043	-0.680337840890756	0.169107954703824	0.46161486940974
Merged-chr15-6337255-4	chr15	6337177	6337377	+	899.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	37488.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	4.64994741175824	4.24081777587065	4.15814590313173	4.42105240900693	4.4573741364783	4.12294543039734	4.40791396546127	4.2976364671024	-0.112424046300333	0.777732670666489	0.913351489281802
Merged-chr3-103860254-4	chr3	103860156	103860356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008979)	promoter-TSS (NM_008979)	-21.0	NM_008979	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	5.93427827672313	5.79477486688545	6.36822243948228	6.2577837754391	5.7758112096512	5.94428485296872	5.57512438811802	5.90841941050292	-0.491653552672119	0.0677289390092322	0.277799318092058
Merged-chr5-38494026-3	chr5	38493934	38494134	+	804.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145559, intron 1 of 10)	ORR1C1|LTR|ERVL-MaLR	8118.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	4.07769653384458	3.53478387014002	3.81747815258022	2.89818866804917	5.08237579249245	5.21692810249947	5.57498838919078	5.3501443176866	4.32512841085161	4.92894531643058e-17	1.10326225999438e-14
Merged-chr17-12990926-4	chr17	12990820	12991020	+	983.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175394, intron 1 of 5)	B3|SINE|B2	1339.0	NM_001113533	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	4.94018410556235	5.26723670122091	5.19921450300868	4.57047243209389	5.23077784858851	4.7984314500821	5.01940960102045	4.86411623018258	-0.0210737869766856	0.953619190279209	0.983474137045163
Merged-chr5-139456845-4	chr5	139456744	139456944	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 1 of 4)	PB1D10|SINE|Alu	3690.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	5.29857856898703	4.97299709667669	5.04906631495594	5.49931317289529	5.21189194709201	4.63300043866335	5.32807254235698	5.04565249643912	-0.27693983470565	0.425757041466045	0.717175323137817
Merged-chr3-88552237-3	chr3	88552141	88552341	+	898.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001362368)	TTS (NM_001362368)	710.0	NR_155543	83409.0	Mm.41680	NM_031248	ENSMUSG00000028062	Lamtor2	2010111E04Rik|AL022628|Mapbpip|P14|Rab25|Robld3	late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	protein-coding	3.44302683006948	3.58994665200374	3.33675300287022	3.27222732829189	3.14424098541547	2.98332052362065	3.26759897248245	3.33493222893748	-0.831870793629553	0.138762432221295	0.414381792154761
Merged-chr4-14865647-4	chr4	14865562	14865762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028264, intron 1 of 6)	intron (NM_028264, intron 1 of 6)	1443.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	6.1498576288619	6.12180626924156	5.61117949335512	5.4400578128724	6.05267834060274	5.84298545644578	5.58293844243712	5.7896524746691	-0.0355218933484435	0.906601957807274	0.965374636270914
Merged-chr11-100735659-4	chr11	100735530	100735730	+	785.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	2585.0	NM_024456	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	3.5596348931756	3.27559389322317	3.31635422906413	3.62037922628734	3.70279426112904	3.88563695612223	3.7950215331166	3.66480873300452	0.92816619729742	0.0643040350048218	0.269447042303421
Merged-chr4-134677015-3	chr4	134676937	134677137	+	879.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 1 of 11)	intron (NM_207237, intron 1 of 11)	27253.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	3.32119604127304	3.25054659280624	3.4780942447832	3.34780593637814	3.165014753373	3.37721084765043	3.06875715256941	3.20398622561787	-0.543224471900868	0.316979567259899	0.628905690750891
Merged-chr6-138140495-4	chr6	138140388	138140588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019946)	promoter-TSS (NM_019946)	-39.0	NM_001361308	56615.0	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	5.84478493370293	5.48982422412836	5.30909736860619	5.65055759437101	5.15960140320244	5.18083190075538	5.15571616890333	4.87649616764172	-0.883880665484551	0.00370157239735879	0.0376768513758904
Merged-chr12-3221278-4	chr12	3221188	3221388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-14503.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	7.14624079641085	7.39682720116884	7.38182002624405	5.81778443345937	7.04281981861951	7.09204749009319	7.07744878365377	7.16464650833857	0.0197774109334894	0.965674005451737	0.9878943061607
Merged-chr8-117050956-4	chr8	117050873	117051073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 16 of 42)	intron (NM_029686, intron 16 of 42)	31476.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	6.68685960274487	6.56220949710024	6.16216047187319	6.68933330251148	6.61114972117571	6.50221787615445	6.6539255549108	6.17929674706506	-0.0690952555183158	0.773635223095834	0.911532362396556
Merged-chr5-64425038-3	chr5	64424978	64425178	+	793.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0-int|LTR|ERVL-MaLR	42864.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	3.13145554282348	2.97373217046847	3.13185807321865	3.20399334843395	3.00902641639929	3.11904513035173	3.12021854561215	3.13023013344736	-0.103132819369119	0.854369822328131	0.945141310652665
Merged-chr5-9071531-4	chr5	9071432	9071632	+	826.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-29205.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	4.0306562604653	3.90353534314602	3.94111002105714	3.9884593310224	3.83918727936451	3.54793138240379	3.87706896716182	3.73693003945843	-0.592386512821643	0.18985169175599	0.488976178326708
Merged-chr11-8575536-4	chr11	8575460	8575660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	88975.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	6.59448491816453	6.79862597418742	6.79158519115719	7.02683049852973	6.75813646828666	6.9677022814549	6.20860511098137	6.78675587905425	-0.160637578007084	0.504224879590676	0.770626277304553
Merged-chr16-5011827-4	chr16	5011745	5011945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133185, intron 4 of 10)	intron (NM_133185, intron 4 of 10)	1708.0	NM_133185	66049.0	Mm.27792	NM_133185	ENSMUSG00000022540	Rogdi	0610011C19Rik|AU020118|C76152|Lzf	rogdi homolog	protein-coding	6.50574129979969	6.43179963759707	6.61924552017245	6.79626211099873	6.6826908963906	6.54201731386882	6.27498219238678	6.68897889257815	-0.0649831263169124	0.774124413112235	0.911716359199097
Merged-chr8-47674485-4	chr8	47674384	47674584	+	968.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023503, intron 1 of 1)	CpG	675.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	4.58321253330316	4.77416235616815	4.79149231867765	4.20673870258342	5.2684745542163	5.17552296489042	4.91227946683231	5.03186188331459	1.05748391864947	0.00295175064677664	0.0315801381762986
Merged-chr5-118650937-4	chr5	118650850	118651050	+	915.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	90231.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	4.78391405926587	5.20218731373298	5.71913359350472	5.27453033164218	4.62260581534161	4.70052896832367	4.76213646692316	4.78154081071059	-1.1249808626396	0.0017892715710926	0.0214350298668944
Merged-chr3-79120388-8	chr3	79120349	79120549	+	980.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	24438.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	5.03808187539606	5.93511273703116	4.96759767067267	4.15761475376423	5.205887800305	5.46479509764823	5.08083818520339	4.48478831747972	-0.172470494106892	0.811207350890385	0.926883359837906
Merged-chr12-84176332-4	chr12	84176255	84176455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	17660.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	5.96521901018759	5.93804991563371	5.64764755901466	5.19007021495941	5.85657838192423	5.65902172965306	5.64447355771102	5.32164192406681	-0.111877442873999	0.726091839647016	0.891025770427008
Merged-chr15-38384883-4	chr15	38384769	38384969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84158.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	8.59344207708944	8.53880645088232	8.81645801688053	8.72362625489643	8.66138482151597	8.76327543657171	8.78828540198225	8.48730163517127	0.00799880995428476	0.959476670191268	0.985513818852278
Merged-chr12-28589550-3	chr12	28589468	28589668	+	900.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7085.0	NM_053156	94041.0	Mm.84927	NM_053156	ENSMUSG00000020636	Allc	1700012B22Rik|Alc	allantoicase	protein-coding	3.71662252618877	3.97293123585943	3.60723173756943	3.7753458282279	3.63371071296809	3.6647863613995	3.75325590213936	3.8638328126414	-0.146549469919756	0.752317809039734	0.902425600431109
Merged-chr4-122886063-4	chr4	122885990	122886190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358036)	promoter-TSS (NM_001358036)	-14.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	8.50802997910143	8.64623630130887	8.35625451626403	8.26532695209063	8.77222013394312	9.02514377537586	8.70448771964289	8.77514195564675	0.470578541497776	0.00467893793547739	0.0452349061979961
Merged-chr11-22784671-3	chr11	22784593	22784793	+	582.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75042.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	3.24667016254043	3.36685051849638	3.68854416331907	3.30097469746612	3.11292638336186	3.02529528863455	2.98049336367103	3.30263218405634	-1.13115065909861	0.0531006990461101	0.240313749834885
Merged-chr1-71102529-4	chr1	71102420	71102620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007525, intron 1 of 10)	CpG	452.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	6.26915058832814	6.06075068500176	6.17036947997342	6.1689971124553	6.49251369890942	6.57346592150786	6.65649188834387	6.37597781201997	0.536310876260355	0.0137993011104722	0.0989842238982465
Merged-chr1-172348256-4	chr1	172348106	172348306	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	6996.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	5.0188863466282	4.98875292717699	5.41544158403984	5.42075039070367	4.37868354471404	4.62910768024922	4.74071336241448	4.9126139591085	-1.13703633146315	0.0013621059967677	0.0172936826729155
Merged-chr10-125966626-1	chr10	125966526	125966726	+	1000.0	f0_balb.idr	exon (NM_177152, exon 1 of 19)	exon (NM_177152, exon 1 of 19)	407.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	4.53772959004337	4.83113793352186	5.3627622356495	4.79493273217966	4.53829718208839	4.84739796085974	4.87601133448424	4.93094717528607	-0.225198128619889	0.546333073441184	0.796350145922542
Merged-chr15-98985480-2	chr15	98985380	98985580	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045991)	promoter-TSS (NR_045991)	-485.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	5.11285500816209	5.09782688215392	5.04766025556386	4.48402587328003	5.18098427561886	5.28699182437463	5.08851093137695	5.1729227980702	0.469430335092496	0.168308926613592	0.460335399563643
Merged-chr1-97567964-3	chr1	97567868	97568068	+	772.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93708.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	3.83962420741841	3.64097176627085	3.47224330279775	4.09626537104734	3.29941738601925	3.39073093821379	3.51836916310839	3.88260437309081	-0.788436857746381	0.148875355302716	0.430746673512948
Merged-chr13-21940455-4	chr13	21940353	21940553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4641.0	NM_183014	193452.0	Mm.187446	NM_183014	ENSMUSG00000006720	Zfp184	4930500C15Rik	zinc finger protein 184 (Kruppel-like)	protein-coding	6.88166392118732	6.93466571394458	6.69105015812988	6.77177033987511	6.46021841242043	6.80673645604815	6.448948195449	6.20582966601078	-0.471794435211057	0.0342680871785018	0.182942186850565
Merged-chr6-39372940-4	chr6	39372819	39373019	+	946.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001361617, exon 2 of 17)	5' UTR (NM_001361617, exon 2 of 17)	4516.0	NR_155076	72144.0	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	5.3999454288254	4.86333393972138	5.21575103080615	5.15836637973096	4.80532359830898	4.64361956554838	5.00695942247257	4.6015039160919	-0.775710362097942	0.0233125706905393	0.141608249631498
Merged-chr4-36013012-3	chr4	36012917	36013117	+	913.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 7 of 8)	intron (NM_001166000, intron 7 of 8)	-167813.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	3.63430394104618	3.95065202360088	4.1260483973507	4.06477795875644	3.7682049098777	3.75236277844723	3.83845374220955	3.85210394475471	-0.460253681109703	0.312695207542849	0.624578922877903
Merged-chr1-176818341-4	chr1	176818234	176818434	+	963.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 1 of 18)	intron (NM_001357390, intron 1 of 18)	3674.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	5.28301107404059	5.40446231929802	5.01401322683931	5.71966702296613	5.57952211011773	4.81167439254578	5.4529454702338	4.97265656725397	-0.249632388677551	0.488856329162365	0.761473753795693
Merged-chr2-152831524-7	chr2	152831423	152831623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289717)	promoter-TSS (NM_001289717)	205.0	NM_009743	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	6.95495402480132	6.99558160799479	6.98120599115035	6.45479129870513	6.92046143096066	6.95690073742947	6.86954915982642	6.98859828871712	0.119323220711653	0.588033235052727	0.819461159383246
Merged-chr8-119424991-4	chr8	119424899	119425099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12163.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	7.30261237043651	6.91013074370151	6.92371699232882	7.12030052931885	6.85383464050142	6.65077461381711	6.82165096289704	7.05555438372741	-0.307620880599612	0.140307415463673	0.416469621571676
Merged-chr18-62464673-3	chr18	62464583	62464783	+	636.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008313, exon 7 of 7)	3' UTR (NM_008313, exon 7 of 7)	79169.0	NM_001361091	107035.0	Mm.21295	NM_134136	ENSMUSG00000042211	Fbxo38	6030410I24Rik|AU044865|AW214031|Moka|SP329	F-box protein 38	protein-coding	3.12201585536375	3.12223561115583	3.12241260270869	2.56708395044455	3.43971654937008	3.47146893846118	3.39055515863595	3.12080792413949	1.40377639362246	0.0271210148605659	0.156704823180471
Merged-chr13-51424888-4	chr13	51424793	51424993	+	748.820801	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16275.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	3.76705062361023	3.90809624413796	4.39543106451386	3.73649020434482	4.31029200006453	3.94589844659833	3.86247543707255	3.97798544638407	0.195920329377767	0.679742267847193	0.86857902618052
Merged-chr10-53597717-4	chr10	53597611	53597811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025541, intron 1 of 3)	CpG	750.0	NM_025541	66403.0	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	5.7529307769409	5.5858335209232	5.96558634155993	5.58509627811847	5.21485068835643	5.39546669573044	5.72454235222178	5.24689572467201	-0.543344978649848	0.0640060495670837	0.268748226610458
Merged-chr7-12987407-3	chr7	12987303	12987503	+	990.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009512)	TTS (NM_009512)	9555.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	3.50032498927988	3.10771734561419	3.28597290020212	2.49517544623666	4.29534526151501	4.18119903780961	4.56496400230602	4.25201311825928	3.66079416006039	0.00217980018040705	0.0249848626475351
Merged-chr19-41331790-4	chr19	41331590	41331790	+	992.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 3 of 16)	intron (NM_031376, intron 3 of 16)	53380.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	4.61540072407203	4.71119605761965	4.6942289360992	5.02075441890367	4.82239586073089	4.3744368358006	4.59491419180411	4.4864895190008	-0.412833013793237	0.266602883278717	0.578235316865616
Merged-chr12-113153388-3	chr12	113153325	113153525	+	740.644409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007763, intron 2 of 4)	intron (NM_007763, intron 2 of 4)	1413.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	3.12133609798241	3.42348726203899	3.2942240465549	3.43629164497911	2.82066641041499	2.88058888976378	2.91501455058334	3.44392766518506	-1.14049036585321	0.0764699845572026	0.298740781053629
Merged-chr13-81711088-4	chr13	81711045	81711245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028372)	promoter-TSS (NM_028372)	-132.0	NM_001081176	67486.0	Mm.279781	NM_001081176	ENSMUSG00000035834	Polr3g	2310047G20Rik|AV275904|RPC32|RPC7	polymerase (RNA) III (DNA directed) polypeptide G	protein-coding	7.78071737028931	7.42321754628745	8.31446059036643	7.86555012397858	7.54005222892353	7.98278102913864	7.78257081623481	7.79226348239878	-0.13495502775523	0.54607342667602	0.796136177079441
Merged-chr16-50396380-4	chr16	50396260	50396460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	36029.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	6.59256161016206	6.84661384077793	6.76385397677167	7.03329741316105	7.09689432070612	6.77005736063894	6.90486396432053	6.68440070055872	0.0700439567922308	0.748520839053324	0.900999421474581
Merged-chr4-102506779-4	chr4	102506682	102506882	+	762.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-63278.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	3.89176987572386	3.88862019348331	4.09547248815047	3.85367851777648	4.44150124714805	4.12159861901706	4.20994616158912	4.22657355686638	0.872533752873442	0.0326035537687494	0.176908702066307
Merged-chr9-66511844-4	chr9	66511743	66511943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175206, exon 2 of 2)	exon (NM_175206, exon 2 of 2)	2750.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	8.01035202041441	8.00747935259941	7.93546796583563	8.01385331997629	8.12212546648952	7.99307247061841	7.98670308628423	8.06538321761612	0.0674897829737212	0.661427859642246	0.859386554615034
Merged-chr3-79178232-4	chr3	79178146	79178346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32371.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	7.39257377844663	7.45163856652457	7.47831541605624	7.27505201894725	7.25325527554848	7.48016891948203	7.1694762035922	6.95178599291483	-0.228919707218497	0.239223482382189	0.549670354848016
Merged-chr14-21707231-4	chr14	21707232	21707432	+	939.1726070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013826, intron 1 of 3)	intron (NM_001013826, intron 1 of 3)	7244.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	3.8858481051806	3.85046362213728	3.73554335773107	3.90100407818433	3.34246050226008	4.00853371974141	3.55200015577323	3.93056664026043	-0.347806700467148	0.488901745265876	0.761511167365744
Merged-chr4-133458219-2	chr4	133458122	133458322	+	882.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21911.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	3.83873259263237	3.55235641141812	3.3340857592689	3.07706088592769	3.55307035105909	3.56927628422267	3.49314325762481	3.20313367856962	-0.0377677977761757	0.947294161569032	0.981119696272421
Merged-chr5-93117806-3	chr5	93117709	93117909	+	737.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009818, intron 1 of 9)	intron (NM_001009818, intron 1 of 9)	24393.0	NM_001347377	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	3.17562802812067	3.00888836483823	3.06482995461943	3.1555756253795	2.83840460506227	2.91493531450952	3.1630137777044	2.80763776425614	-0.717489940209127	0.234829508289812	0.544694741783141
Merged-chr15-77836316-3	chr15	77836229	77836429	+	943.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	5846.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	3.60583600915915	3.52587403834475	3.43138447388523	3.34897493051198	4.07710003519694	3.9287048574954	3.92440624059929	3.490214797843	1.28499636609469	0.00861346276609175	0.0708619586485951
Merged-chr3-105052225-4	chr3	105052162	105052362	+	863.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	691.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	3.84477489652776	4.21945401996604	4.05097017244016	3.52925975096504	4.58008453789295	3.96835340130746	4.03317442143559	3.94983297730593	0.629267731039928	0.198274020437798	0.499789182930889
Merged-chr3-97824904-4	chr3	97824820	97825020	+	899.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 3 of 46)	intron (NM_001039376, intron 3 of 46)	-56906.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	4.27592978483355	4.32810053685766	3.95116207169332	3.96765069643093	3.90011098406137	4.31823172208958	4.21550470297493	3.83898288075338	-0.151259724743388	0.732112978679078	0.893930797678999
Merged-chr9-66945989-4	chr9	66945875	66946075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311101)	promoter-TSS (NM_001311101)	-111.0	NM_001311101	67941.0	Mm.30120	NM_026467	ENSMUSG00000036781	Rps27l	1810034D23Rik	ribosomal protein S27-like	protein-coding	7.06953649690284	7.36529997412283	7.07076766577637	7.08291840678419	6.69985759950159	7.06929729999191	7.11542986839661	6.77252725216097	-0.323432657995407	0.121059471656266	0.385319149175931
Merged-chr17-5491563-4	chr17	5491489	5491689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1011.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	7.5165570830071	7.49742048262164	7.67470065770309	7.96463688152464	7.45510336645488	7.29638746649814	7.7904507277408	7.61078451460096	-0.181968449334325	0.374428989547687	0.677784078373359
Merged-chr5-105626397-4	chr5	105626304	105626504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73565.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	5.67643037065654	5.72355549365388	5.65182635257991	5.27032436803361	5.75483911250597	5.57311515704391	5.57077707776503	6.0804266348936	0.312553861163086	0.27962698760227	0.591673638350908
Merged-chr7-90216122-4	chr7	90216015	90216215	+	943.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49317.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	4.2700612959813	4.17406424073957	4.35860337770096	4.82981108338991	3.75197702455516	4.03123430305445	4.60284881553096	4.35580463261091	-0.530371090994343	0.265325712702045	0.577001515467012
Merged-chr11-110426989-4	chr11	110426892	110427092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	27890.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	6.41652534646988	6.50225003246798	6.43528845439289	6.4446792904809	6.71576778488087	6.48341043829369	6.62523011881148	6.4306934947002	0.184537848620966	0.380456799472215	0.682890271060785
Merged-chr11-99039979-4	chr11	99039888	99040088	+	744.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1256.0	NM_010517	16010.0	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IBP-4|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	3.6424210119045	3.84888400822836	3.46656741977529	3.66897511576791	3.75196155513525	3.7033979459078	3.78213271856764	3.88971599077619	0.348029211272686	0.453614446629782	0.737602748130425
Merged-chr10-128273079-3	chr10	128272985	128273185	+	640.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019963, intron 1 of 23)	B2_Mm1a|SINE|B2	2587.0	NM_019963	20847.0	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	3.78228606353065	3.34277619867566	3.20393342832298	3.06151907095804	3.8420514678268	3.90573566730807	3.51041246427287	3.78046100122213	1.28702902065967	0.0183574632788453	0.120953983034799
Merged-chr1-170176962-4	chr1	170176854	170177054	+	943.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1990.0	NM_001305045	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	4.63309331770999	4.08833345860984	4.3053470428794	4.26590599594188	4.66829311862898	4.52585587606945	4.74714355897058	4.20580385009746	0.517660526491743	0.193345678903279	0.493529716199714
Merged-chr7-81058895-3	chr7	81058796	81058996	+	929.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054085, intron 1 of 13)	intron (NM_054085, intron 1 of 13)	1296.0	NM_054085	116904.0	Mm.475768	NM_054085	ENSMUSG00000038763	Alpk3	AW319487|D330016D04|MAK|Midori|mKIAA1330	alpha-kinase 3	protein-coding	3.9759063251466	3.64449635260214	4.05673961334933	3.65249540237306	3.33643298835427	3.52841803363171	3.57751789142919	3.41017149344365	-1.21079478613632	0.0184177767160528	0.121194317174071
Merged-chr2-4882031-8	chr2	4881964	4882164	+	994.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175400, intron 1 of 8)	CpG	500.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	4.42471205181614	4.57623967096241	5.10073772128766	4.51311881113853	5.29989479973761	5.33253489423771	5.19223730408836	4.8223116057673	1.00507352499593	0.00505154928064511	0.0478780594203779
Merged-chr10-98775024-4	chr10	98774938	98775138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139604.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	7.18946071052977	6.98353343544834	7.05553964503376	6.99629744228833	7.05961016250331	6.76325236548142	6.8003381028801	6.97712323699817	-0.19365575610325	0.323669795878968	0.635160363667085
Merged-chr2-167926844-4	chr2	167926813	167927013	+	869.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5414.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	3.86141929022791	3.33367145843594	3.56453517411219	3.47472538882152	3.60074715595044	3.68213256386822	3.49433172225569	3.85955825220308	0.310842477697184	0.535512609966049	0.789765706629649
Merged-chr4-148042218-3	chr4	148042111	148042311	+	842.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027809, intron 2 of 12)	intron (NR_027809, intron 2 of 12)	1022.0	NM_001161798	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	4.01303290209621	3.89504715437771	4.14688471291699	3.99058990800754	3.97990030994718	3.87483353972149	3.68342113284579	4.14424161197986	-0.21220874005381	0.629523440054196	0.842301337901528
Merged-chr3-59204335-5	chr3	59204198	59204398	+	720.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	6584.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	3.06229918042953	3.32480394200813	3.11781265735878	2.83567733734774	2.92269204111185	2.69962855608809	2.80670636896909	2.74450356997155	-1.30572243233079	0.0489847910434247	0.228867081212017
Merged-chr11-79293186-4	chr11	79293089	79293289	+	925.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38494.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	4.76162692808476	4.34413550419355	4.2670266854252	4.24081808381602	4.65122464584387	4.71147786102326	4.43392465715863	4.82566812997748	0.566852609833731	0.135374938874009	0.409617955029463
Merged-chr14-19417855-4	chr14	19417761	19417961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	184726.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	7.90048610079992	7.21373898125384	8.42709443950074	8.78648102481175	7.80029089817667	8.36712241788581	7.67851551992883	8.85103966425057	0.0685420837772502	0.897679882576615	0.961781536267342
Merged-chr10-96132347-4	chr10	96132227	96132427	+	853.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93880.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	3.9161479687179	3.82160786304738	3.91668233082196	4.1761422668441	4.29658281513575	4.14610591587542	4.27482030215438	4.48095463737331	0.815380659859423	0.054780042443255	0.244471972947387
Merged-chr2-52762719-4	chr2	52762655	52762855	+	887.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20606.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	4.31279264237652	4.66010114696568	4.44953437630014	4.75138674695557	4.62665007744721	4.48908895353852	4.34147947885512	4.529974054888	-0.146060250440798	0.698038419233274	0.878149109978883
Merged-chr6-37732524-4	chr6	37732410	37732610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138301.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	7.30464081816824	7.41864496059937	6.77199790086086	7.27181346739699	7.56813720341413	7.91027823621065	7.24808220731198	7.67418622142369	0.534651306999911	0.0175610230677891	0.117164131707465
Merged-chr17-34639757-4	chr17	34639668	34639868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5115.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	6.86639929875427	7.01762453493225	7.06476585789182	6.39122803777866	6.95026351214156	6.98953704385713	6.61555774282387	6.59622506314013	-0.0629337542529231	0.797353567951136	0.921630258034137
Merged-chr3-154572544-4	chr3	154572384	154572584	+	774.270813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24227.0	NM_009968	12972.0	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	3.37355890368926	3.26434236624325	3.48940966971788	3.69822040731037	3.87967259525385	3.29075995184041	3.72260542531183	3.31067023764245	0.348639612739484	0.534455372304331	0.789253090150415
Merged-chr11-97838426-4	chr11	97838328	97838528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010688, exon 7 of 7)	3' UTR (NM_010688, exon 7 of 7)	-2352.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	5.57304614258903	6.25490271186823	5.70309875380438	4.93011264671697	5.71148120305411	5.51536070293059	5.40316594988967	5.74712931191286	-0.15596667485603	0.666407869287605	0.862000851460164
Merged-chr13-35953115-3	chr13	35953018	35953218	+	940.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-14788.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	4.31581304707068	4.86569199893601	4.68811188632756	4.44292845530329	3.58667736743923	3.98231667211483	3.95678402474002	3.97074356828638	-1.88610214737646	3.33558246814044e-05	0.000794855790089615
Merged-chr3-69171334-4	chr3	69171203	69171403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40070.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	4.49738616650755	4.91620083291954	5.00304990948745	4.98296831875902	4.80860881408125	4.9676385729796	4.73366732287964	4.86450032642721	-0.0643783303258264	0.850159210974844	0.943475969197813
Merged-chr14-70766771-4	chr14	70766724	70766924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023045)	promoter-TSS (NM_023045)	-196.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	7.73657390831692	7.62057040350758	7.32942228483267	7.58996620474954	7.41638487705515	7.66759455309335	7.57007328317921	7.6021884144393	-0.0222645771722091	0.902160575028601	0.963687586843739
Merged-chr11-87471614-4	chr11	87471505	87471705	+	977.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	44014.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	4.78412285731171	5.62933891003996	5.95057787823106	5.06109133921474	5.01367044717664	5.12687187065497	4.84541401180464	4.78176794431497	-0.893834609740063	0.0219307819302371	0.136261446142838
Merged-chr3-9341059-3	chr3	9340957	9341157	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62021.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	4.34525300688395	4.48201683689837	4.49949355719239	4.16809287327567	4.09678871388352	3.91593177896439	4.15292135355633	4.0200252756023	-0.806568398381585	0.0520528761532331	0.237535047551672
Merged-chr17-71020741-3	chr17	71020635	71020835	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 1 of 36)	intron (NM_001083934, intron 1 of 36)	1178.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	3.95197032590098	4.33113511802437	4.53883892571525	4.14221186376292	3.74807273812208	4.2758214040598	3.88284316207038	3.95026784184266	-0.744754533671778	0.100385266118117	0.347839687324577
Merged-chr9-21135704-4	chr9	21135592	21135792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4417.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	5.28942088696245	5.45653209827062	5.44341767122616	5.35656070217367	5.96244981744437	5.6182930342456	5.47224147326924	5.38062054594054	0.441572634700066	0.127063249586719	0.396503070685361
Merged-chr5-65561294-4	chr5	65561212	65561412	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310618, intron 1 of 4)	RLTR26_Mus|LTR|ERVK	24067.0	NM_001310619	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	5.27813139693342	5.35734500836838	5.18425771079673	5.69547404219738	5.0664198647106	4.80612490926262	5.12587949568146	5.6419547625619	-0.383844587564696	0.264243475011971	0.576455127446606
Merged-chr12-102448420-3	chr12	102448251	102448451	+	816.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-8538.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	3.21857678241161	3.39481334821338	3.3884783693456	3.67890932213268	3.10927975032627	3.20171240816363	3.08286545348	3.27629345739277	-1.0374051443958	0.0661995674470147	0.274082073715162
Merged-chr2-65342274-3	chr2	65342154	65342354	+	825.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177074, intron 7 of 11)	intron (NM_177074, intron 7 of 11)	21772.0	NM_177074	320106.0	Mm.227703	NM_177074	ENSMUSG00000061171	Slc38a11	9330158F14Rik	solute carrier family 38, member 11	protein-coding	3.83728955561947	3.63949934005461	3.69341848041416	3.92264639292184	3.47248025222629	3.24201974714273	3.9075237461551	3.40793965018507	-0.783339355168737	0.140069282944168	0.416157580026199
Merged-chr1-97688948-4	chr1	97688837	97689037	+	909.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26919.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	4.65041380330305	4.80532859352019	4.60606227728341	5.20478633336009	5.06336029601053	4.83072124542484	5.39811362656604	5.15470219361199	0.509003385557071	0.163567423427945	0.453317978124739
Merged-chr7-38107651-4	chr7	38107541	38107741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007633)	promoter-TSS (NM_007633)	-151.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	8.94100519674959	9.12608486545768	8.91252277205274	8.78726023989704	8.87783751935419	9.18171903907402	9.22502740679996	8.76299844148936	0.0986990777800303	0.567048213401988	0.808122532096819
Merged-chr2-69635214-4	chr2	69635115	69635315	+	984.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12040.0	NM_028284	72569.0	Mm.252136	NM_028284	ENSMUSG00000063145	Bbs5	1700049I01Rik|2700023J09Rik	Bardet-Biedl syndrome 5 (human)	protein-coding	4.77238299616477	4.66930166303593	4.81155102984577	5.12347128552017	4.78697528450579	5.02200627703262	5.11687890728953	4.73051221957037	0.0884925243362245	0.799299052870159	0.922485593889919
Merged-chr8-94037123-4	chr8	94037022	94037222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177767)	promoter-TSS (NM_177767)	-76.0	NM_177767	270086.0	Mm.251085	NM_177767	ENSMUSG00000033009	Ogfod1	4930415J21Rik|AA387199|AA939912|AW061076|mKIAA1612	2-oxoglutarate and iron-dependent oxygenase domain containing 1	protein-coding	8.60022915335794	8.72302776162259	8.73196523447701	8.62827110619499	8.54835175609066	8.57547744474202	8.42721614677526	8.51073971768622	-0.193609237604883	0.180304961342323	0.476619261090548
Merged-chr6-108902360-4	chr6	108902237	108902437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	73696.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	6.66558770241464	6.64538177215601	6.66677020974278	6.8977066912718	5.91543404995829	5.80442905533125	5.99413895399533	5.89928922710813	-1.24703676411397	3.91335474880241e-08	1.84347238692923e-06
Merged-chr13-99375794-3	chr13	99375710	99375910	+	791.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173757, intron 4 of 10)	intron (NM_173757, intron 4 of 10)	31024.0	NM_173757	218506.0	Mm.30208	NM_173757	ENSMUSG00000041632	Mrps27	2610028H14Rik	mitochondrial ribosomal protein S27	protein-coding	3.29666010818161	3.32760749387931	3.55963050964737	3.52355886268503	3.08796971764474	2.91930706333896	3.2847699317307	3.55741868561728	-0.726889541149154	0.21936706436881	0.526905860656933
Merged-chr13-19395304-4	chr13	19395199	19395399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347485, intron 1 of 7)	(A)n|Simple_repeat|Simple_repeat	514.0	NM_024270	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	6.14801647233055	6.19087923959767	5.53875896281376	6.16272182238247	6.35516427918598	6.36436283530116	6.26893668115807	6.34932624224082	0.436377008034545	0.0834169010433651	0.313908505787156
Merged-chr2-144188392-4	chr2	144188340	144188540	+	958.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136884, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	850.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	4.30741184516839	4.00782676982428	4.26522082603472	4.49850914979927	3.87883825671464	4.09657472035165	4.36919718567937	4.30534647544739	-0.303705753182863	0.479787832562149	0.755490488120151
Merged-chr11-74994308-4	chr11	74994211	74994411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 10 of 18)	intron (NM_001002764, intron 10 of 18)	68439.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	6.03742040344732	6.03842375890268	6.17905569262622	5.93977413845409	6.01475670038881	6.08030429736316	5.87411069924725	6.17463359718458	-0.00498281540321844	0.983263193335154	0.993973908402019
Merged-chr12-71968802-4	chr12	71968699	71968899	+	934.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026102, intron 17 of 25)	intron (NM_026102, intron 17 of 25)	79256.0	NM_001286452	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	4.51252496712383	4.6826922212248	4.51322947284477	4.21248634003121	5.46615520514729	5.44224383230797	5.72839953412536	5.39958120911735	2.04025326694651	2.36991177252445e-10	1.71430843553371e-08
Merged-chr5-142904020-2	chr5	142903920	142904120	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007393, intron 5 of 5)	intron (NM_007393, intron 5 of 5)	2734.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	2.96274337430507	2.80568018212737	2.96312157788854	2.40766188443319	3.15763074747284	3.13857924724715	3.18109275315175	3.08255993536339	1.49374960459857	0.0262316949904687	0.153443186701827
Merged-chr4-133690442-4	chr4	133690326	133690526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 11 of 19)	intron (NM_001080819, intron 11 of 19)	-17260.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	5.50765787331946	5.50608450534713	5.38214844711789	5.70121702053795	6.34145342003092	5.68769559426303	5.90895128091343	6.2718239332934	0.882249737228912	0.00178593321958563	0.0214080398512775
Merged-chr4-136172192-4	chr4	136172095	136172295	+	899.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177733)	promoter-TSS (NM_177733)	-79.0	NM_177733	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	4.6321844372766	4.58190555601875	4.43834783008148	4.08646420280138	4.59765938519	4.33638813686411	4.28672227502732	4.47684301542047	0.00104514484772909	0.997921236161959	0.99906319748704
Merged-chr17-25809069-3	chr17	25808961	25809161	+	783.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164225)	promoter-TSS (NM_001164225)	-24.0	NM_001164225	214931.0	Mm.152289	NM_001164225	ENSMUSG00000025738	Fbxl16	BC042620|Scirr1	F-box and leucine-rich repeat protein 16	protein-coding	3.46859972663202	3.19012565554048	3.25273313382333	3.23093610818609	3.08167403430593	3.48080646494409	2.91282841534516	3.46700130754827	-0.118799493911843	0.839324124117074	0.938895262970456
Merged-chr8-36936546-4	chr8	36936471	36936671	+	824.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 2 of 17)	intron (NM_001194940, intron 2 of 17)	15871.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	3.99250056028144	4.0268995402641	4.59362157347077	4.7060427588183	4.32418389871052	4.22339420227973	3.97719467504102	4.14499087157136	-0.498224177718464	0.27298031067347	0.584406690338791
Merged-chr9-108002058-4	chr9	108001979	108002179	+	966.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013785)	promoter-TSS (NM_013785)	-569.0	NM_013785	27399.0	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	4.60090911968071	4.83089562046176	4.81278937290174	4.97021667787859	4.94641533956472	5.26320102270982	5.15673577699481	5.05680924984903	0.543581094436046	0.096297849409678	0.340048212247575
Merged-chr19-12013411-4	chr19	12013316	12013516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23324.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	7.39820071500529	7.56108838267851	7.4571769929521	7.38452048738474	7.50327699923666	7.3627757751419	7.47526259151324	7.07066172015918	-0.107967883565628	0.565461435099539	0.807563793919544
Merged-chr1-152813855-4	chr1	152813780	152813980	+	949.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 3 of 15)	RLTR28|LTR|ERVL	13727.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	4.64110611794108	4.50648747191064	4.67977416446611	4.00184645808968	4.79381340103121	4.88781710589528	4.50007509737762	4.55953347352089	0.506966156455814	0.205576368716983	0.509248774555215
Merged-chr10-117285133-4	chr10	117285032	117285232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2860.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	6.79137433455628	6.60785801917159	6.72337371666849	6.67599296029017	6.45905252507851	6.57651358495621	6.50588714018936	6.58313404663057	-0.24586201225565	0.225376316915625	0.533739049166131
Merged-chr19-56727357-4	chr19	56727243	56727443	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4971.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	6.04494491574544	5.77629555499683	5.65082770229448	5.65543138563412	5.57608615868597	5.57222090857999	5.64764388463554	5.35868377651157	-0.39971642127862	0.141871654607366	0.419050647493473
Merged-chr6-125447438-4	chr6	125447328	125447528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47332.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	5.86892080563171	6.36990238348362	6.57565611702088	6.75219332944908	6.09057554292392	5.67237852464553	6.38751303900285	6.01024399486705	-0.567591328964518	0.051983018448899	0.23737380114822
Merged-chr4-128971263-4	chr4	128971162	128971362	+	951.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8807.0	NM_001301841	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	4.59517463644258	4.50066677870966	4.23483439585686	4.369682339448	4.70190066231333	4.80592323718802	4.49397195635236	4.77568100747801	0.598514927154446	0.0952655861541351	0.337773061087698
Merged-chr13-100730993-4	chr13	100730884	100731084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009874)	promoter-TSS (NM_009874)	-42.0	NM_009874	12572.0	Mm.259718	NM_009874	ENSMUSG00000069089	Cdk7	AI323415|AI528512|C230069N13|Cdkn7|Crk4	cyclin-dependent kinase 7	protein-coding	7.44301531183028	7.34805942089994	6.95305307290826	7.57648825063208	7.83751079013608	7.68749147220654	7.52695783837893	7.61907571473562	0.41644959558497	0.0406106779781104	0.20365136309736
Merged-chr16-32458185-2	chr16	32458085	32458285	+	703.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001163160, intron 3 of 8)	intron (NM_001163160, intron 3 of 8)	26955.0	NM_001163160	13026.0	Mm.98775	NM_009981	ENSMUSG00000005615	Pcyt1a	CTalpha|Cctalpha|Ctpct|Cttalpha	phosphate cytidylyltransferase 1, choline, alpha isoform	protein-coding	3.09405721871444	3.25925657323273	3.15172860060867	2.96208210963294	2.8636534152717	2.87009150819632	3.02372850726606	3.20468491138679	-0.501390608000352	0.402121382972227	0.699665059487647
Merged-chr19-11604819-4	chr19	11604722	11604922	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026835)	promoter-TSS (NM_026835)	-18.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	5.56239676079995	5.16348278872964	5.2195263808211	5.26083867704661	5.08170525425597	5.08838514675443	4.88773445282051	4.90764364867684	-0.579911656703683	0.0619384283564894	0.263290242204347
Merged-chr12-103437832-4	chr12	103437732	103437932	+	876.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194067, intron 4 of 5)	intron (NM_194067, intron 4 of 5)	3643.0	NM_194069	52668.0	Mm.2121	NM_026790	ENSMUSG00000064215	Ifi27	1110013J02Rik|2900026P10Rik|D12Ertd647e|ISG12a|Ifi27l1	interferon, alpha-inducible protein 27	protein-coding	4.77493310525748	4.70793765459501	4.28217259933836	5.04365007263107	4.20060075145396	4.50890933713507	4.40464072553571	4.50833032386811	-0.764185157373218	0.0552116348221457	0.245680729870312
Merged-chr2-84670035-2	chr2	84669935	84670135	+	673.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001037279, exon 3 of 4)	exon (NM_001037279, exon 3 of 4)	673.0	NM_001033166	72657.0	Mm.259293	NM_001033166	ENSMUSG00000076437	Selenoh	2700094K13Rik|Selh	selenoprotein H	protein-coding	2.89122319374409	2.67827933820785	2.95976846657367	2.8273948722712	3.03017118236819	3.1382629817936	3.18896140586251	3.62035940015587	1.69303802869624	0.00576928896133192	0.0527931855435759
Merged-chr5-105718480-4	chr5	105718370	105718570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	17660.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	8.06541050443351	8.02235139301575	8.16069688523002	8.20093599445207	8.03600400296462	8.07008542270114	8.25871831443918	7.85691307835148	-0.0696849909460508	0.676700387247766	0.867245059450191
Merged-chr4-86612142-4	chr4	86612043	86612243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173400)	promoter-TSS (NM_173400)	-88.0	NM_173400	230376.0	Mm.74730	NM_173400	ENSMUSG00000038047	Haus6	6230416J20Rik|9830144E06|D4Ertd27e|mKIAA1574	HAUS augmin-like complex, subunit 6	protein-coding	8.44518895072586	8.78430332534515	8.56974318907414	8.77798934903854	8.49368289628	8.44038047832022	8.7875451056628	8.29282504657077	-0.175612102024229	0.320219360072792	0.632064940811992
Merged-chr11-86487082-4	chr11	86486965	86487165	+	894.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029788, intron 3 of 8)	intron (NM_029788, intron 3 of 8)	2408.0	NM_029788	76892.0	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	4.25760813805696	4.61062272802846	4.07097498024491	4.1994954737279	4.04302350485308	4.14363281564727	4.14994565620862	4.16549439179583	-0.445168939777365	0.282575784413183	0.594758629298828
Merged-chr4-40700453-4	chr4	40700332	40700532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025444, intron 1 of 7)	intron (NM_001025444, intron 1 of 7)	2484.0	NM_025545	66408.0	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	6.86021700534726	6.91817241818436	6.74764695786969	6.76144945332234	6.88252791465694	6.99649535207603	6.97937700954235	6.89667289476797	0.162982265614991	0.39348110033578	0.692576805225404
Merged-chr15-13391103-3	chr15	13390991	13391191	+	628.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-217416.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	3.65633231711579	3.68527167408709	3.60467849454895	3.33631816094035	3.69331974000306	3.66711860763591	3.36078510796892	3.70477458911467	0.157396033331496	0.753325956079078	0.902798885097597
Merged-chr6-100366016-4	chr6	100365917	100366117	+	913.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78659.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	4.700331187944	4.82045026512772	4.77918163356239	5.08430535314256	4.57595070345717	4.61477597579027	4.8984889397911	5.07749710569483	-0.137816544505264	0.698983324992097	0.878576949789197
Merged-chr1-193173109-3	chr1	193173009	193173209	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181048)	promoter-TSS (NM_181048)	-360.0	NM_001160360	319266.0	Mm.482460	NM_181048	ENSMUSG00000079144	A130010J15Rik	-	RIKEN cDNA A130010J15 gene	protein-coding	5.9040052854401	5.8876805066562	5.68814859654592	6.01600212483424	5.60520753209238	5.36386518505882	6.201913770207	5.83264638180421	-0.161025247231723	0.5792291353513	0.815284766169077
Merged-chr2-121171584-2	chr2	121171484	121171684	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290819)	promoter-TSS (NM_001290819)	416.0	NM_001290824	51885.0	Mm.383499	NM_153387	ENSMUSG00000027263	Tubgcp4	4932441P04Rik|76p|D2Ertd435e|GCP-4	tubulin, gamma complex associated protein 4	protein-coding	3.8001175471883	3.37102442198495	3.43221155426346	3.51982813776999	3.55787495572687	3.8740734595176	3.53476385179708	3.60112516757	0.339235687982855	0.495051989348764	0.76551249266485
Merged-chr16-91743207-4	chr16	91743087	91743287	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	13816.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	5.14592870350433	4.93314350497622	4.67860244326427	4.86218610874598	4.8115086822262	4.3830473900185	5.00496213759784	4.40751614111701	-0.467028091682001	0.213773514574454	0.519305996174024
Merged-chr18-12236462-4	chr18	12236349	12236549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008720)	promoter-TSS (NM_008720)	-63.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	8.64425384025349	8.69457454379721	8.45474796861677	8.48224307471034	8.54320848932968	8.67314972797813	8.84995837368098	8.36396092393418	0.0595030869899329	0.725558054417156	0.890921883682774
Merged-chr7-127922546-4	chr7	127922438	127922638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360699, intron 6 of 10)	intron (NM_001360699, intron 6 of 10)	7575.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	7.30800878193138	7.28676999742959	7.35854119200088	7.33175925805459	6.92615124320469	7.03137217698504	6.84725391362499	7.03625970465997	-0.495426737518658	0.00630046631364609	0.0562180441909537
Merged-chr6-117816432-4	chr6	117816311	117816511	+	979.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24770.0	NM_001346649	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	5.50978214939106	5.20010223239162	5.85906079753599	6.11551642653782	4.77177258802347	5.09187181952029	5.250037006299	5.39509929768776	-1.04083825804759	0.00299915002782427	0.0319814981019482
Merged-chr7-24507526-4	chr7	24507442	24507642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110958, intron 1 of 2)	CpG	455.0	NR_110958	232969.0	Mm.181332	NM_146183	ENSMUSG00000064264	Zfp428	2410005H09Rik|AV271806|AW047854|Znf428	zinc finger protein 428	protein-coding	6.63045128392155	6.85649683904501	6.46783458024661	6.24221749363553	6.75129522545275	6.66200079950642	6.75551722238188	6.48057185698852	0.162102846914687	0.489732034292262	0.761935283416117
Merged-chr5-53195041-4	chr5	53194956	53195156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172710, intron 2 of 23)	MIR3|SINE|MIR	18396.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	6.59251849469184	6.17486315374292	6.66753329671821	6.83059386976791	6.29102588377613	6.2061085074977	6.30926785304444	6.47772495668205	-0.403606279833528	0.095706370734515	0.338767903053958
Merged-chr11-114965653-4	chr11	114965555	114965755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5238.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	7.30314374678227	7.72323603983271	7.31465122797974	7.05162596859624	7.08732016016991	7.08648696937684	7.00657269102202	7.2993086408188	-0.327831005556575	0.13115519276647	0.403104428771734
Merged-chr3-101802901-3	chr3	101802801	101803001	+	895.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33322.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	4.23034174419559	4.28409255724357	4.38515002720238	4.21170958077777	3.99255545058089	3.73026018480282	3.66218177828365	3.73451904012062	-1.31172620186982	0.00378135353422222	0.0383346847083
Merged-chr11-78178045-4	chr11	78177957	78178157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106113)	promoter-TSS (NR_106113)	-92.0	NM_001291235	68385.0	Mm.390375	NM_026708	ENSMUSG00000019437	Tlcd1	-	TLC domain containing 1	protein-coding	6.25941316734075	6.3705486827774	5.99898454350595	6.05770801938559	5.88941345249394	6.05927834362704	6.19177941015621	6.06000690018405	-0.197604521008124	0.41502031498912	0.709431580225999
Merged-chr11-52360196-2	chr11	52360096	52360296	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011694)	promoter-TSS (NM_011694)	-666.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	3.52706094790113	3.35345120117942	3.52753045130866	3.67747544569101	3.61971958809111	3.39896385314944	3.61804301107713	3.72811885165994	0.200082590163458	0.687724742940563	0.872467953691452
Merged-chr4-135885912-4	chr4	135885802	135886002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9287.0	NM_009924	12802.0	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	5.87368711251486	6.00773089314869	6.15994126243331	5.72383696057348	6.45424042201289	6.2751776593689	6.40719368533307	5.84572927587428	0.517793299654667	0.0477303010975474	0.22536356463024
Merged-chr7-120150419-4	chr7	120150319	120150519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5128.0	NM_011775	22787.0	Mm.6510	NM_011775	ENSMUSG00000030911	Zp2	Zp-2	zona pellucida glycoprotein 2	protein-coding	7.66749584032961	7.91571086202155	7.97259472718906	8.26219316833611	7.9846794472544	7.98798227388923	8.14340914162222	8.02796397701897	0.0679702039754029	0.715170304209937	0.886010584897636
Merged-chr4-128669830-2	chr4	128669730	128669930	+	996.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	L1MEf|LINE|L1	15128.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	2.96804197875039	3.04011487115755	2.84993730538668	2.5082994929025	2.95977122237068	2.68065126127024	2.64197435219949	2.90898865268944	-0.20621118810819	0.763563510253852	0.907249475784712
Merged-chr17-28738145-4	chr17	28738048	28738248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168513, intron 9 of 11)	intron (NM_001168513, intron 9 of 11)	-31169.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	6.74793682620015	6.5551020086885	6.40423938706513	6.30648374317091	6.47804537533861	6.82474811519342	6.68713047130464	6.16249187830261	0.0770840737031594	0.752528963313684	0.902553434256667
Merged-chr17-6107500-4	chr17	6107357	6107557	+	970.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001103181, intron 1 of 13)	intron (NM_001103181, intron 1 of 13)	627.0	NM_001103181	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	5.38237523792567	5.59930579431191	5.11608163629015	4.81044439166551	5.16794980321735	5.38500739338097	4.79771508469551	4.77497666638888	-0.364588605205045	0.321967468480987	0.633481969373104
Merged-chr18-62191683-4	chr18	62191590	62191790	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11590.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	5.2411673542191	5.19865629982362	5.24207827880961	5.82397977601721	4.85170704355331	4.4850026512126	4.76695147615691	4.94293117798308	-1.24222079959989	0.000496364192425339	0.0076689183530808
Merged-chr17-34934981-4	chr17	34934881	34935081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010893, exon 6 of 6)	3' UTR (NM_010893, exon 6 of 6)	3728.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	7.16561982486095	7.22643650470695	7.21168795304862	6.98009677820339	7.21410326932304	7.26142175366167	7.30072849642862	7.29170428506224	0.171735432282335	0.347458493496211	0.655506340921964
Merged-chr15-78595001-4	chr15	78594897	78595097	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-2050.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	5.16047897890558	4.86913244357616	4.90403543662152	4.75922692881702	4.9932922997113	4.8883955391613	4.84472952509061	4.90075501009166	-0.010018612181153	0.975488139915242	0.991324270933399
Merged-chr17-79896107-4	chr17	79895985	79896185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286647)	promoter-TSS (NM_001286647)	38.0	NM_178050	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	7.46921007286354	7.75818567996249	7.48029287169358	7.80117078467336	7.80439333893246	7.86439222204915	7.90290102558522	7.65671631630001	0.212868623459106	0.237690994358057	0.547846878032904
Merged-chr18-67736996-4	chr18	67736888	67737088	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12367.0	NM_008977	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	4.94996456574652	4.79695104776683	4.83542450364661	5.15296240272443	4.83678061823303	5.19731465369693	5.54769339486667	5.29861015795554	0.533148527057468	0.1200974887422	0.383662362594824
Merged-chr15-38650545-4	chr15	38650443	38650643	+	920.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11361.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	4.79087872694307	4.81096938534516	5.07099698065114	5.38468701653438	4.66309326584992	5.04134553482445	4.68946527965996	4.86419907798756	-0.480791804788752	0.179458328115729	0.475688538969556
Merged-chr14-66272264-2	chr14	66272151	66272351	+	686.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	8801.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	2.49970754697911	2.4293029152976	2.49997350450238	2.42589661167207	2.62544207409645	2.67112340421725	2.61975841589131	2.62809351351015	0.929277167706	0.156066272702891	0.44197234026042
Merged-chr16-94599547-4	chr16	94599461	94599661	+	721.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-11858.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	3.41935449145414	3.67153246348638	3.22416389531559	3.48103460801845	3.7050795950971	3.70779834330027	3.46613444575929	3.87303670941028	0.736108604587901	0.146439347728381	0.426769011298658
Merged-chr6-29216549-7	chr6	29216466	29216666	+	996.6785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302933)	promoter-TSS (NM_001302933)	-202.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	5.50642213663897	4.97169565638733	5.85402625586046	5.72987105157334	5.00575230357826	5.57098697193913	5.36898688240604	5.13582643757817	-0.492592760532319	0.149147666062836	0.431184018629893
Merged-chr6-100381291-4	chr6	100381183	100381383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93925.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	6.29223747881493	6.09825434379138	6.2743044950724	6.69250951224144	6.60639261839894	6.50644842555466	6.2611422787488	6.12791752831741	0.0289317624975219	0.910539962613173	0.96669834733672
Merged-chr18-34220876-4	chr18	34220725	34220925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007462)	promoter-TSS (NM_007462)	-159.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	7.22995384836128	7.15533895786225	6.8613591392713	7.1858130953229	6.86451933899572	6.82838149046692	6.68014345349047	6.97551276698185	-0.38695343748905	0.0531516430935428	0.240444860259687
Merged-chr6-76269143-3	chr6	76269047	76269247	+	939.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-973330.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	5.13768691003484	5.06201274407024	5.29809192494312	5.66684071785307	3.82958698994038	4.18818010676428	4.26842507064242	3.9862395737725	-2.9266374326614	6.85833029560211e-12	6.32343383563034e-10
Merged-chr3-132085332-3	chr3	132085227	132085427	+	821.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020265)	promoter-TSS (NM_020265)	35.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.27077190529409	3.27632354317321	3.78971776513127	3.36210402224103	3.57513128576159	3.44732738894451	3.54180681449652	3.33178883963371	0.145424178985419	0.783870298229904	0.915840917490605
Merged-chr1-189675572-3	chr1	189675487	189675687	+	730.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081363, intron 7 of 17)	intron (NM_001081363, intron 7 of 17)	12499.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	2.87281618892509	2.92743298800061	3.04346294333554	2.93282898903361	2.82261416263589	2.85074432088986	2.66964869796489	2.67583618561636	-0.866332671352865	0.170675359388574	0.463886709030905
Merged-chr6-124732041-1	chr6	124731941	124732141	+	670.0	f0_balb.idr	intron (NM_001077705, intron 3 of 15)	intron (NM_001077705, intron 3 of 15)	1113.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	4.02120368739279	3.06998504344129	3.58504898245866	3.34354261231962	3.40071707805494	3.47412321708047	3.46240533048351	3.52973589354194	-0.262934309133059	0.649535991669639	0.852797294781466
Merged-chr1-151035140-4	chr1	151035053	151035253	+	799.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41718.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	3.82124080555263	3.27152126000298	3.3036991614076	3.65191203133221	4.00312635784667	3.73452960524686	3.80505487993056	3.86604249733838	0.961080242015647	0.0602320611759626	0.259127100782342
Merged-chr14-52141402-4	chr14	52141291	52141491	+	930.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023879, intron 14 of 24)	intron (NM_023879, intron 14 of 24)	30488.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	4.15808107182891	4.23084163337312	4.0048461963782	4.24713797894096	4.3745885133865	4.54951919327771	4.36021523177264	4.20365249740701	0.493439492294876	0.207518946915709	0.511496333628133
Merged-chr5-99220579-4	chr5	99220436	99220636	+	894.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 13 of 13)	intron (NM_181318, intron 13 of 13)	32391.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.99703846462003	3.91933406574491	4.04368437102248	3.74439223744052	4.08015175503007	3.96942846163349	3.83318730427056	3.94752664984453	0.13295214505638	0.759843216645256	0.905842932790046
Merged-chr2-166976555-4	chr2	166976470	166976670	+	949.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	-11853.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	5.35898831811819	5.1616135490266	4.81292570846737	5.37584901481231	5.3892979283884	5.58547953217437	4.87234376046908	5.00660801128946	0.0769015798848719	0.824096290726455	0.932476232435989
Merged-chr7-118652819-3	chr7	118652681	118652881	+	916.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028930, intron 8 of 17)	intron (NM_028930, intron 8 of 17)	19045.0	NM_028930	74424.0	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	3.26961562176721	3.48778328627363	3.63119289522262	2.98752257011291	3.53296637915759	3.95045581248224	3.85273288045903	3.68064143931635	1.30696916149916	0.01610231649213	0.110132294185963
Merged-chr7-90040659-4	chr7	90040566	90040766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 3 of 5)	intron (NR_110365, intron 3 of 5)	11507.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	6.31222570622201	6.48450646082064	7.01187516923853	7.10266903911101	6.44156879197326	6.0597379721918	6.4441700292568	6.38430845717481	-0.633756520977705	0.0175897484057542	0.11729629958527
Merged-chr12-10755239-3	chr12	10755124	10755324	+	957.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	-292589.0	NR_045860	71457.0	Mm.95280	NR_045860	ENSMUSG00000113620	7420701I03Rik	-	RIKEN cDNA 7420701I03 gene	ncRNA	4.53498471457831	3.96484512555698	4.22399094620502	4.7932582057518	3.73890559474677	4.05196392552939	4.0168681099706	3.86873545622507	-1.32324108895739	0.00466746458667089	0.0451761574401206
Merged-chr15-59809495-4	chr15	59809374	59809574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14515.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	6.79585542361831	7.13738625448329	7.25849312818146	6.90385945221876	7.18924832626263	6.86778924542541	6.9137853523534	6.90440315364748	-0.0657769042138794	0.755253516645246	0.903634896880696
Merged-chr3-103171711-4	chr3	103171651	103171851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026602)	promoter-TSS (NM_026602)	96.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	7.52024207625754	7.69628783821879	7.49352698329596	7.47299701301179	7.5686319443205	7.82156368073575	7.59023867093687	7.46935087784558	0.0912327386266178	0.608094818663147	0.830348592814168
Merged-chr9-13511205-3	chr9	13511132	13511332	+	746.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79871.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	3.39412228534759	3.50738903039168	4.06623295235368	4.44412801993083	3.48466275890254	3.64117282795163	3.67993078874137	3.52104309674123	-1.04070010651093	0.0696890687217132	0.28246672869101
Merged-chr12-34808331-4	chr12	34808230	34808430	+	743.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	108765.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	3.96034779264667	3.89029074382975	3.56694708025684	4.19542277723917	3.97537004541229	4.17806508325859	3.89521959321801	4.00622049273743	0.204422315230114	0.661111986498511	0.859233242450522
Merged-chr3-127923378-3	chr3	127923297	127923497	+	795.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040552, intron 1 of 4)	intron (NR_040552, intron 1 of 4)	7226.0	NR_040552	329753.0	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	3.6439258984686	3.31154634095744	3.64448787130155	3.53615620318017	3.07988744641013	3.23261715842666	3.17903015982678	3.82034974057976	-0.602668803088569	0.302063818843309	0.614370464992115
Merged-chr9-57158277-4	chr9	57158186	57158386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025417)	promoter-TSS (NM_025417)	13.0	NM_025417	66199.0	Mm.41687	NM_025417	ENSMUSG00000032299	Commd4	1110039H05Rik	COMM domain containing 4	protein-coding	6.23673660265901	6.03982624676059	5.91209595110706	5.95631766327897	5.97113995071457	5.71712030672128	5.97115117980376	6.2153311291799	-0.0841430933729552	0.737209577248315	0.8963640666944
Merged-chr4-138913986-4	chr4	138913877	138914077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028453)	promoter-TSS (NM_028453)	-30.0	NM_028453	73162.0	Mm.238081	NM_028453	ENSMUSG00000041161	Otud3	3110030K17Rik	OTU domain containing 3	protein-coding	6.53077211917701	6.4654458128954	6.11676942723346	6.36307027209738	7.44232789674011	7.47135301679176	7.25811358296588	7.32781750522221	1.39312092829357	3.74148172379926e-12	3.6282687686418e-10
Merged-chr5-101765103-4	chr5	101764977	101765177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173370)	promoter-TSS (NM_173370)	-53.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	7.26582291374824	7.24380982992102	6.9303873082438	7.06165667281737	7.22515667718222	7.42253021578943	7.36042392206877	7.1859482251999	0.229191283792787	0.226965054154417	0.535616160342754
Merged-chr8-71388456-3	chr8	71388341	71388541	+	873.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181418, intron 9 of 12)	MTE2b|LTR|ERVL-MaLR	-6489.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	3.65796406264017	3.6215558620368	3.86062861798359	3.9229210371296	3.71327077756223	3.59792285417962	3.84396617699864	3.71000258520711	-0.184605139148237	0.693039982370305	0.875211530726656
Merged-chr5-123079858-4	chr5	123079754	123079954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039723, intron 1 of 11)	intron (NM_001039723, intron 1 of 11)	3579.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	5.88645888357354	6.45022943345896	6.25031737221537	5.99054716850182	5.97001369622615	5.80847718861038	5.3518473698811	5.81126321017014	-0.630810541128848	0.0264014501699889	0.154085669207088
Merged-chr9-69453837-8	chr9	69453712	69453912	+	834.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007585, intron 1 of 12)	CpG	129.0	NM_007585	12306.0	Mm.238343	NM_007585	ENSMUSG00000032231	Anxa2	AW215814|Cal1h	annexin A2	protein-coding	3.69909410185649	3.68665368766195	3.8894664196005	3.53962369717278	3.56927204723271	3.86962297754125	3.4030826290398	3.53429332590931	-0.308915988345547	0.532836264737724	0.788334077899947
Merged-chr13-93230743-4	chr13	93230627	93230827	+	974.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-38310.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	5.27048774257849	5.49224802094144	5.35933547929022	5.33152187752692	5.22110028658211	5.41438831137547	4.97818974774852	4.96068996651917	-0.381071887297674	0.207064702714562	0.511049184276
Merged-chr5-89852962-4	chr5	89852888	89853088	+	941.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081401, intron 3 of 21)	intron (NM_001081401, intron 3 of 21)	30346.0	NM_177872	330119.0	Mm.133062	NM_177872	ENSMUSG00000043635	Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding	4.88724014690738	5.08311167898959	5.16126784426983	5.65880898869882	4.44652981480218	4.67785705358721	5.27935721528152	5.02849448265789	-0.675703004311454	0.0848645476446868	0.317004230056502
Merged-chr19-56548044-4	chr19	56547917	56548117	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025811)	promoter-TSS (NM_025811)	105.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	4.20608753767026	4.11309721117768	4.16038038250233	3.7215701612425	4.55423716302885	4.28718246935939	4.39521257519537	4.10983884799888	0.770881556865112	0.0696861675370888	0.28246672869101
Merged-chr5-150118564-4	chr5	150118468	150118668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	99893.0	NM_001289566	140498.0	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	7.75373595787431	7.64591058205295	7.89557851382153	8.0927056257963	7.35945045703314	7.44089484365393	7.97072828159642	7.43052241122843	-0.381321660596994	0.0721834500006578	0.288713519195146
Merged-chr16-11313916-4	chr16	11313816	11314016	+	902.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011608, exon 1 of 3)	5' UTR (NM_011608, exon 1 of 3)	107.0	NM_011608	21935.0	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	4.71985019549949	4.27826713795144	3.88029949238106	4.42312792384956	4.70346337525891	4.28564315296815	4.19031252949479	4.29921549534196	0.080338124005606	0.855847972379586	0.945782466107742
Merged-chr13-23760874-2	chr13	23760794	23760994	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013550)	TTS (NM_013550)	355.0	NM_178192	326619.0	Mm.228709	NM_178192	ENSMUSG00000060093	Hist1h4a	-	histone cluster 1, H4a	protein-coding	4.80179785899045	4.69305583419528	4.91778045691373	3.87283324961861	5.11788972618962	5.57335567653895	5.44630690886573	5.11777704482672	1.38265634868959	0.00064198137880732	0.00941982942942202
Merged-chr18-36400679-2	chr18	36400579	36400779	+	959.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52055.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	3.23515590371285	3.37128791880186	3.10644995531157	3.31475863526004	3.04598203541234	3.62909052857184	3.28328833995845	3.55833844210506	0.457431066534496	0.41771877177443	0.711430250427875
Merged-chr10-77391284-4	chr10	77391189	77391389	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024838, intron 1 of 11)	L1MC3|LINE|L1	26984.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	5.74640471059126	5.72423629270238	6.1588769594454	5.94524908000882	5.35261987028608	5.27961353541588	5.64338092615639	5.83710238230339	-0.602380230848348	0.0354330731623424	0.186863059540814
Merged-chr16-52094895-4	chr16	52094787	52094987	+	920.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	63338.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	5.00227167582449	4.52444319932022	4.43212241288734	4.68028310844919	5.09300820296841	4.82621523144689	4.63040690481014	4.64893858145978	0.307417555186055	0.404326838457091	0.701411705444497
Merged-chr19-6036361-3	chr19	6036249	6036449	+	931.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10227.0	NM_028769	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	3.55246966647819	4.11088811428642	3.68098554078178	3.47522236417717	4.51168147551748	3.86350525919054	4.12319258079835	4.3013310953443	1.35477058441543	0.00536059282277263	0.0500326208032183
Merged-chr12-73667769-4	chr12	73667687	73667887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	82991.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	7.19653989826227	7.01113615888214	7.19778587949758	7.16056854760554	7.11681075302695	6.87653819117419	7.03685435565852	7.03101966515775	-0.163342141637019	0.382864810938555	0.684806264846199
Merged-chr18-23819365-3	chr18	23819266	23819466	+	847.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	15396.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	4.1604352219233	3.8662361757132	4.12163227983561	3.561256295693	3.95003380445837	3.63562516130661	3.78783423225147	3.30980537033185	-0.708272020086019	0.188053776194582	0.486567783924179
Merged-chr17-13660101-4	chr17	13659983	13660183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-100458.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	7.02872920043865	6.83391453530892	6.71455182877629	7.15534612453965	6.98222586143193	7.02445319966965	7.03022042061964	7.01282065599474	0.0736286928268279	0.715848876395844	0.886371813543908
Merged-chr1-170510776-3	chr1	170510662	170510862	+	933.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 2 of 9)	MIRc|SINE|MIR	46348.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	3.77094671677158	3.5834422715592	3.86868678057849	4.07893970268195	3.72044634149137	3.47307626017732	3.70510767636939	3.81876250605679	-0.483777637197896	0.321539944905358	0.63320355346499
Merged-chr4-154946510-4	chr4	154946421	154946621	+	873.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14402.0	NM_010419	15208.0	Mm.137268	NM_010419	ENSMUSG00000048001	Hes5	bHLHb38	hes family bHLH transcription factor 5	protein-coding	3.75402442266354	3.56838921349039	4.05070603111598	3.78145676639474	3.80073977247804	4.12962044202946	4.07516292439594	3.90877409213428	0.513714630266771	0.257768001210262	0.569608784519116
Merged-chr5-130001542-4	chr5	130001457	130001657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357027, intron 1 of 2)	intron (NM_001357027, intron 1 of 2)	1492.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	5.79244940982125	5.60768233169814	5.76947611001782	5.9974904422158	5.70085202747417	5.64834822814322	5.83295616137848	5.76538949773989	-0.124883381250156	0.631312499379772	0.843365346521392
Merged-chr11-115933594-4	chr11	115933502	115933702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020483)	promoter-TSS (NM_020483)	-57.0	NM_020483	57230.0	Mm.267810	NM_020483	ENSMUSG00000020755	Sap30bp	2700016D05Rik|Hcngp	SAP30 binding protein	protein-coding	7.18284718294043	7.47686836889279	6.73336261152352	6.86231697928865	7.53309326558344	7.41535014664386	6.95647497551215	7.01258094587035	0.22280047144509	0.369083080134133	0.673441492374711
Merged-chr9-108284612-4	chr9	108284509	108284709	+	924.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5848.0	NM_025449	66257.0	Mm.10407	NM_025449	ENSMUSG00000032606	Nicn1	1500032A17Rik	nicolin 1	protein-coding	3.99549578428311	4.47802656285548	3.94050377246435	4.33009759785655	4.46262077007342	4.17385391198356	4.53820171471918	4.09824541878218	0.290166354874401	0.500483913486309	0.768850577358824
Merged-chr15-5144245-2	chr15	5144145	5144345	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013367, intron 1 of 8)	intron (NM_001013367, intron 1 of 8)	384.0	NM_001355640	105787.0	Mm.207004	NM_001013367	ENSMUSG00000050697	Prkaa1	AI194361|AI450832|AL024255|AMPKalpha1|C130083N04Rik	protein kinase, AMP-activated, alpha 1 catalytic subunit	protein-coding	4.03154513485319	4.12196237608636	4.46090973508894	3.76555913870118	4.17924611424224	4.15715532594609	4.06456294388323	4.38310025926554	0.245700459737225	0.577067806426946	0.813924639099529
Merged-chr2-104687477-4	chr2	104687404	104687604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177190, intron 7 of 9)	intron (NM_177190, intron 7 of 9)	24658.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	5.63849538761142	6.34732020772615	6.14770938798244	5.90777868140636	6.54202614427366	6.41851535273673	6.05517132086059	5.85327748769732	0.334350694363802	0.244207910671041	0.555328922238245
Merged-chr12-80069343-4	chr12	80069235	80069435	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43678.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	5.2695643358038	5.59658115286848	5.0679459700144	4.8313598935644	5.46637611427519	5.64482204106565	5.39045051517245	5.26681310740735	0.426407771120171	0.191909085281982	0.491416224099225
Merged-chr6-87546933-4	chr6	87546858	87547058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13699.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	5.20836379924436	5.28145038586209	5.42894535359313	5.46830232001864	5.5748616318607	5.68595826724947	5.53738699509452	5.53542489236119	0.383521772942849	0.161007671369314	0.449496589284453
Merged-chr11-78983560-1	chr11	78983460	78983660	+	582.0	f0_c57.idr	intron (NM_010708, intron 1 of 10)	intron (NM_010708, intron 1 of 10)	1364.0	NM_001159301	16859.0	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	2.82572817184382	2.99462830202859	2.68637221156404	2.35565844167421	3.11626581668383	2.93660845174179	3.15938959701004	2.88936803586042	1.31404190997987	0.061229985910556	0.261806281439747
Merged-chr11-117334235-4	chr11	117334113	117334313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113488, intron 1 of 9)	intron (NM_001113488, intron 1 of 9)	1900.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	5.89311359447944	5.53339573207761	5.41317660245253	5.6226204903138	5.79611212888666	5.49577080653437	5.60991939328207	5.68490770187379	0.0563010696704124	0.836712035369426	0.937953980810766
Merged-chr7-110669604-4	chr7	110669504	110669704	+	849.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41947.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	4.1427746993551	4.02674904351023	4.70695181695374	4.30792705388033	4.15826672832323	4.32034462141234	4.35435930592184	4.5668828637194	0.0829674778831852	0.842908725609199	0.940323698985438
Merged-chr9-65745626-4	chr9	65745520	65745720	+	940.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 2 of 9)	RSINE1|SINE|B4	69072.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	5.11292392663306	5.32349559819471	5.45024526328623	5.42993269348936	4.78928292518636	4.74458955834411	4.72181611487749	4.90131449369675	-1.07195499187006	0.000702260891275939	0.010155674112176
Merged-chr2-59925427-4	chr2	59925256	59925456	+	923.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 20 of 35)	intron (NM_001001182, intron 20 of 35)	-42750.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	4.76976222769538	4.42122278188525	4.77055179821062	5.08751539095752	4.38764702281584	4.66680812140929	4.67451553193401	4.57412330634332	-0.486006193230091	0.197910505818264	0.499258289397441
Merged-chr5-67264282-4	chr5	67264198	67264398	+	812.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028975, exon 4 of 8)	exon (NM_028975, exon 4 of 8)	3733.0	NM_030108	67878.0	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	3.93761977671458	4.25319683807233	3.76943568215671	4.44023260238919	3.80019822522341	4.11380169770147	3.86890842645107	4.45026196544534	-0.149054302286704	0.75956948379609	0.905741537670396
Merged-chr13-41505878-3	chr13	41505748	41505948	+	960.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18488.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	3.95668529823766	3.41505407432485	3.60049331976697	3.92372659061386	3.31915800074699	3.1411715715401	3.16898604503608	3.54583063193972	-1.50802137639443	0.00832617454685106	0.0690652345962372
Merged-chr15-102204115-4	chr15	102204029	102204229	+	942.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289695)	promoter-TSS (NM_001289695)	129.0	NM_001358674	68744.0	Mm.352945	NM_153194	ENSMUSG00000046897	Zfp740	1110034O07Rik|AW548228|Znf740	zinc finger protein 740	protein-coding	4.42088195113759	4.92224044571751	4.55780154927761	4.50722399934666	4.94096280806832	4.81527516145543	4.65928130780902	4.86015649842692	0.448215002264434	0.20498870023008	0.508517432602965
Merged-chr4-150583680-4	chr4	150583625	150583825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	68449.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	6.66369465575866	6.37686122585702	6.30158527671157	6.74567896655703	6.25325686685707	6.31634036252888	6.32523864166996	6.50798713291811	-0.291390333944285	0.207991483265733	0.512129022670942
Merged-chr7-107259378-3	chr7	107259289	107259489	+	990.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49944.0	NM_029660	76572.0	Mm.128134	NM_029660	ENSMUSG00000073894	Rbmxl2	1700012H05Rik|Hnrnpg-t	RNA binding motif protein, X-linked-like 2	protein-coding	4.54212030478194	4.1874912272073	5.11950165000737	5.18068006594363	3.81854375738657	3.84402062223579	3.95726554385886	3.97120753132899	-2.31273202235804	1.46701089330516e-06	4.96294526495094e-05
Merged-chr7-89178153-3	chr7	89178050	89178250	+	963.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 6 of 14)	intron (NM_001360746, intron 6 of 14)	160637.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	4.03254889943486	4.07498838927575	3.82196166881036	4.55835743388986	3.82533697843235	4.29739574214136	4.06327625696273	3.87587492737949	-0.380328893164095	0.424890300920622	0.716567599871949
Merged-chr19-24301153-4	chr19	24301067	24301267	+	931.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008846, intron 14 of 14)	intron (NM_008846, intron 14 of 14)	-20581.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	4.8745516809028	4.52696758093554	5.33738781801886	4.97557828029988	4.91918507556169	4.59209693132579	5.10624424241826	4.55314682859892	-0.28806217960324	0.453554952658274	0.737590257379956
Merged-chr9-75625758-3	chr9	75625685	75625885	+	830.755554	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027309)	promoter-TSS (NM_027309)	53.0	NM_027309	70082.0	Mm.19119	NM_027309	ENSMUSG00000032184	Lysmd2	2210402C18Rik|AV033872|AW538442	LysM, putative peptidoglycan-binding, domain containing 2	protein-coding	3.75254174820734	3.7310226919374	4.04685521402951	3.60006089456619	4.19805744998276	4.70208753991785	4.35287305592092	5.03142366157152	2.05033361421593	5.42612347792935e-06	0.000159663515103569
Merged-chr6-124931357-4	chr6	124931264	124931464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170341)	promoter-TSS (NM_001170341)	-24.0	NM_145385	30853.0	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	8.22384674803334	8.1155575953884	8.15967969946033	7.85983743821064	8.27712171402235	8.20860235413618	8.26489837882893	8.17248402946606	0.186157023383305	0.25868717249649	0.570489393947544
Merged-chr2-178058411-3	chr2	178058326	178058526	+	867.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19999.0	NM_001162922	353208.0	Mm.381194	NM_001162922	ENSMUSG00000078861	Zfp931	2810021G02Rik	zinc finger protein 931	protein-coding	3.89890352039763	3.27698698721709	3.50373355635872	3.58422562636922	3.75175987562544	3.49715538904129	3.54658445129908	3.76289262762439	0.207071107852995	0.686056642994881	0.871760528240684
Merged-chr8-111933785-4	chr8	111933695	111933895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033321)	promoter-TSS (NM_001033321)	18.0	NM_001357348	234740.0	Mm.87513	NM_001033321	ENSMUSG00000031951	Tmem231	4932417I16Rik|Gm178	transmembrane protein 231	protein-coding	7.24933518201071	7.47669434159156	7.25058624000256	7.55795541563155	7.60644299603249	7.15603999699175	7.7342078082335	7.4316848804599	0.139767907697445	0.491822669643385	0.763211244010156
Merged-chr15-78257911-4	chr15	78257764	78257964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 7 of 9)	intron (NM_008677, intron 7 of 9)	13053.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	6.34900822349462	6.68721955574786	6.48876141666133	6.53417266620471	6.45386335346574	6.43182168225262	6.07750309441487	6.2894372724813	-0.292357312066147	0.196652822507677	0.497807740730158
Merged-chr9-97111195-4	chr9	97111098	97111298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138756)	promoter-TSS (NM_138756)	-157.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	7.89763456180294	8.31577048178165	8.04154662891904	8.1833635053549	8.38489511716782	8.29121554282239	8.05585645601286	8.24650524210212	0.164493971465673	0.344087024325981	0.652610656810439
Merged-chr2-90581368-5	chr2	90581321	90581521	+	927.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008982)	promoter-TSS (NM_008982)	-774.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.41607069688919	3.64714992282851	3.75183512570683	3.63932411980582	3.51034440671024	3.76785079747348	3.46612926852715	4.01448842221872	0.258218362740822	0.606112040140791	0.829351704182035
Merged-chr15-61988011-6	chr15	61987872	61988072	+	934.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010849, exon 2 of 3)	exon (NM_010849, exon 2 of 3)	2631.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	4.04313124471828	4.02335736945771	4.08670229499201	3.90420669772777	3.94869274216828	3.75344511223771	3.73556816747737	3.50843336627947	-0.73001059754197	0.11665538846445	0.377974058547146
Merged-chr11-53563227-3	chr11	53563127	53563327	+	966.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B2|LTR|ERVK	-4142.0	NM_008443	16568.0	Mm.88694	NM_008443	ENSMUSG00000018395	Kif3a	Kif3|Kifl|Kns3	kinesin family member 3A	protein-coding	4.64597982076627	3.89604091639425	4.83499443348462	4.43599085055301	3.86385601494536	4.18142656928492	3.74197253428251	4.5376655242863	-0.90791250304333	0.0698325901352181	0.282826368414601
Merged-chr1-164066884-4	chr1	164066785	164066985	+	902.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164059, intron 4 of 7)	intron (NM_001164059, intron 4 of 7)	4809.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	4.16486824022396	4.38567583444211	4.26172640636212	4.34416860591842	4.60806145967518	4.23979065230327	4.33186882115515	4.51055573947689	0.334357061033054	0.382596177745209	0.684637549504146
Merged-chr2-124609909-2	chr2	124609809	124610009	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172537)	promoter-TSS (NM_172537)	-387.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	5.94738545686885	6.56211827213627	6.82511585270396	6.54295437724898	6.33048517969129	6.07784058058827	6.64388788908574	6.52263887777891	-0.143495897072247	0.592856109825021	0.822423445862576
Merged-chr10-111159959-4	chr10	111159868	111160068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	-4834.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	6.36516408401645	6.69819437548018	6.44785804366422	6.70570035688601	5.83948388229805	5.69289508697391	5.54473002149901	5.56886775374674	-1.39120922365284	2.7090807674306e-08	1.31804278841382e-06
Merged-chr1-74362858-4	chr1	74362800	74363000	+	899.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033345, exon 3 of 10)	exon (NM_001033345, exon 3 of 10)	792.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	4.03641201294013	4.12544507598931	3.98604903964956	3.98652510786433	4.22567554994916	4.349172270247	4.36513452240192	4.13117453232695	0.607593900961958	0.12526742972725	0.392828019233233
Merged-chr7-140953912-4	chr7	140953813	140954013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030694)	TTS (NM_030694)	2048.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	6.69063740906862	6.80204566183171	6.89340694177622	6.88581340620711	7.05378121341692	7.02935670608	6.84516674120195	6.9783030334021	0.217879814336697	0.259365968311073	0.571231383736746
Merged-chr4-35099999-4	chr4	35099899	35100099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-52056.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	8.12119617308705	8.12026283693354	8.13506510872057	8.52147408318965	8.08090024194117	8.08033497136041	8.24858146198626	7.97734586993763	-0.187135194592274	0.294408827661686	0.606634274221694
Merged-chr4-152477620-4	chr4	152477558	152477758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355173)	promoter-TSS (NM_001355173)	-80.0	NM_001355739	260305.0	Mm.302496	NM_153424	ENSMUSG00000039577	Nphp4	4930564O18Rik|nmf192	nephronophthisis 4 (juvenile) homolog (human)	protein-coding	8.3763535645986	8.15297006327409	8.05727249908706	8.41087063312041	8.469600365159	8.54480842828883	8.70871698001575	8.47453523699016	0.364515217551555	0.0286066221622837	0.162375658603604
Merged-chr10-127569670-4	chr10	127569601	127569801	+	804.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 34 of 88)	intron (NM_008512, intron 34 of 88)	-35142.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	4.09501052368252	4.06626526700542	3.70569363057139	3.81762297097967	3.75103648541876	3.88011916025276	3.94618669857284	3.86384027902665	-0.194442683922975	0.664726853573974	0.861073297406066
Merged-chr5-124552838-4	chr5	124552732	124552932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026409)	promoter-TSS (NM_026409)	-32.0	NM_001190795	67848.0	Mm.281601	NM_026409	ENSMUSG00000029389	Ddx55	2810021H22Rik|mKIAA1595	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	protein-coding	6.98256500986694	7.14599388356384	6.82422725220444	6.75776468170647	7.04450984119114	7.02884019341234	6.87155543341085	6.87477759822226	0.0430225048922577	0.832067575717953	0.935710699145492
Merged-chr16-89848770-4	chr16	89848677	89848877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 12 of 27)	intron (NM_009384, intron 12 of 27)	-30425.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	7.76881934747498	7.55148800144818	7.76254654964025	7.76187311766404	7.46968329353381	7.45391157789454	7.61382559167401	7.20191251723952	-0.357645695593605	0.0481929479951805	0.226565610297702
Merged-chr15-95962626-3	chr15	95962520	95962720	+	905.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 17 of 19)	intron (NM_175344, intron 17 of 19)	116933.0	NR_126493	402773.0	Mm.210567	NM_001033483	ENSMUSG00000078925	D030018L15Rik	-	nuclear receptor coactivator 2 pseudogene	pseudo	3.99796122143091	3.83217580382754	3.58746829634525	4.17760157239118	3.54378253674035	3.50906816932795	3.68858298721915	4.12120901199105	-0.541221161054725	0.293781425304495	0.606204004660023
Merged-chr14-27336627-7	chr14	27336563	27336763	+	915.8214109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	626.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	3.69021482156508	3.84442404682096	3.74289996046726	3.40446836372751	3.86943745009002	3.69728857574035	3.50777772413046	3.93005456779259	0.286887382135331	0.558435447670225	0.80315363863569
Merged-chr8-105605760-3	chr8	105605652	105605852	+	875.533325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081241, intron 1 of 21)	intron (NM_001081241, intron 1 of 21)	523.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	3.30373034989824	3.51821325434628	3.41951763439532	3.37776902582325	3.25614760699176	3.47634795211432	3.2925656396985	3.6201369509579	0.0278831035832719	0.957131449289528	0.984757116793997
Merged-chr10-78087306-4	chr10	78087179	78087379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17911.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	7.34119378394948	7.24746538893576	7.17227299928729	7.28988288308084	7.20429852708682	7.21738029529613	7.20268658596783	7.13263147430967	-0.102952263117159	0.560411936326912	0.804484535652898
Merged-chr11-95232140-2	chr11	95232040	95232240	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29389.0	NM_053093	93670.0	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	3.60934764777073	3.32652440259594	3.27113346529733	3.30600060507436	3.3474087560246	3.38533023570944	3.49216299923996	3.87464947869306	0.532210886039311	0.314159349730538	0.62623357103366
Merged-chr19-60731087-3	chr19	60730983	60731183	+	882.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24904.0	NM_178421	332397.0	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos C2HC-type zinc finger 1	protein-coding	3.57483392184358	3.0836440584162	3.24007874433639	3.46334631668658	3.46618692239202	3.35249121706716	3.40525894051552	3.66768781303405	0.40756477205968	0.45076145986484	0.735500766836748
Merged-chr11-69614203-4	chr11	69614118	69614318	+	839.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011367)	TTS (NM_011367)	3687.0	NM_011367	20415.0	Mm.1431	NM_011367	ENSMUSG00000005202	Shbg	ABP	sex hormone binding globulin	protein-coding	3.68082122272309	3.57646118545456	3.46115977313984	2.86685855648211	3.7457224366778	3.45371140699954	3.56098999655355	4.03046945444879	0.888157013334489	0.13251028831274	0.405399451698957
Merged-chr15-55291993-4	chr15	55291898	55292098	+	966.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15752.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	4.7069566136218	4.81694098300448	4.49587139262534	4.79185803404399	4.65196083440943	4.99120133247659	4.83178169719784	4.78040063112682	0.194290091533641	0.569844077327068	0.809567114687306
Merged-chr8-14889379-3	chr8	14889277	14889477	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	841.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	5.46700762513293	5.69491074776079	5.66120626301989	5.9138914409234	5.77343038562384	5.72938103171696	5.553858995175	5.68264797228905	-0.0379764014982973	0.887986108681862	0.957984130693897
Merged-chr5-138831971-4	chr5	138831863	138832063	+	908.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	11883.0	NM_001195128	384244.0	Mm.485002	NM_001195128	ENSMUSG00000094504	Gm5294	EG384244	predicted gene 5294	protein-coding	4.61734391801622	4.57925543143644	4.83062437999474	4.06831562825964	4.26451809816707	4.54077450512656	4.47607732632522	4.85939451938098	0.0191003405425865	0.963630096655303	0.987037553781465
Merged-chr2-165927542-2	chr2	165927451	165927651	+	694.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-42713.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	4.35036251074579	4.20536681919239	4.77683894464809	4.52990135760332	4.21121252676839	4.19431387826753	3.99913767443619	4.01292195999731	-0.909984952374353	0.0288451239875334	0.163169918168055
Merged-chr1-84935025-1	chr1	84934925	84935125	+	600.5	f0_balb.idr	promoter-TSS (NM_027921)	promoter-TSS (NM_027921)	58.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	3.05541400122115	2.84325983467206	2.99586118655385	2.9553384490628	2.86538617748033	3.10544832288103	3.10073668142643	3.11136969945289	0.343000056875931	0.555000750068995	0.801191516655959
Merged-chr15-64163393-3	chr15	64163296	64163496	+	753.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001276461, intron 9 of 28)	L1MB5|LINE|L1	-102948.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.89077060078756	3.49949828614665	3.49425482419395	4.42867550138588	4.06978927923317	3.7385172257913	3.8255273306758	3.88902966247453	-0.0460158205078017	0.933863271729611	0.976171965495374
Merged-chr9-96705763-4	chr9	96705672	96705872	+	990.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359959, intron 2 of 2)	intron (NM_001359959, intron 2 of 2)	13673.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	5.65314086904541	5.62122865600202	5.628940721173	6.20756380847865	5.21075808476306	5.16518675643525	5.60033907609841	5.30909167335103	-0.846414924173049	0.00641227675488701	0.0570096736367852
Merged-chr14-61774380-4	chr14	61774277	61774477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92004.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	5.9939627320116	5.93529701949603	6.30088947392124	6.26081374754201	5.88075319998953	5.82721752888615	5.77927024221302	5.90108057137681	-0.458716915358882	0.0632087168117855	0.266805031960273
Merged-chr3-54353454-4	chr3	54353374	54353574	+	947.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7633.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	4.51188200694359	4.5625247522967	4.33353115454208	4.50122359121341	4.60875030140849	4.41326512264135	4.84965056414729	4.66661193266932	0.35636694415037	0.321747194540234	0.633236874703318
Merged-chr10-111390087-4	chr10	111389991	111390191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83136.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	6.66693684815339	6.85603516424617	7.21194149774536	7.27762653843314	6.8088829129328	7.02600726936624	6.85540156181424	7.11995896690506	-0.116798857585273	0.604466880076249	0.828485859893348
Merged-chr8-13154337-3	chr8	13154235	13154435	+	863.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-4826.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	3.53093395689502	3.73897395788452	4.02880735417068	3.5547375571145	3.64775043503052	3.87392139108612	3.68679418126706	3.75176384429116	0.0590805328756847	0.902071531602892	0.963672718305277
Merged-chr9-61960986-4	chr9	61960893	61961093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 7 of 7)	MER5A|DNA|hAT-Charlie	-14194.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	6.24684263516111	5.95179561542721	6.21057642526587	6.20944412726994	6.25982669802656	5.91126298154852	6.17879738202186	6.04455493812617	-0.0704059126254776	0.767941203835989	0.909224339615052
Merged-chr10-59237886-4	chr10	59237783	59237983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	15961.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	6.56871200329485	7.60325953555897	7.04952651133115	5.94688258790111	7.48982444592835	7.33117105507078	7.27390631317361	6.71484769287891	0.397022066656928	0.436208340904359	0.72505818409614
Merged-chr8-117198309-4	chr8	117198221	117198421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081151, intron 9 of 10)	intron (NM_001081151, intron 9 of 10)	40186.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	8.79826791682431	8.79599419257224	8.68849776712263	8.5979066677336	8.63156753850706	8.62950561766921	8.48864675997589	8.55130506644518	-0.177721636722352	0.229280192234012	0.538167676934038
Merged-chr2-127182994-4	chr2	127182892	127183092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25288.0	NM_198630	329509.0	Mm.120738	NM_198630	ENSMUSG00000044145	1810024B03Rik	-	RIKEN cDNA 1810024B03 gene	protein-coding	6.68021954527869	6.85428317360571	6.84259550360914	6.8261799322354	6.84774563754914	6.72762409154516	7.11048839683873	7.01675619436222	0.179147021610801	0.372249562130767	0.676099595682082
Merged-chr3-116815568-2	chr3	116815468	116815668	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7402.0	NM_001081326	77559.0	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	3.51918689412597	3.39207236999423	3.90474588901533	3.42481801451722	3.34277548411448	3.57910159348446	3.38999821201052	3.81650698848782	-0.088623816172605	0.867142354805863	0.950275983383522
Merged-chr15-41615622-4	chr15	41615532	41615732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 2 of 17)	L3|LINE|CR1	166529.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	6.49961125202206	6.6709624683166	6.5986998363682	6.8631522270555	6.54639617558091	6.4564879936749	6.8310152676845	6.33457631372233	-0.176019260479981	0.437925027889164	0.726107422957041
Merged-chr2-77285148-3	chr2	77285032	77285232	+	847.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4540.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	3.49281557362308	3.53733895924698	3.32379381113689	3.3303057218946	3.53830393259754	3.23956758584357	3.57962434214727	3.4373765088938	0.135924668797185	0.790969609793773	0.918930451102165
Merged-chr18-65965211-3	chr18	65965130	65965330	+	689.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145493, intron 2 of 2)	intron (NM_145493, intron 2 of 2)	4948.0	NM_145493	225644.0	Mm.192285	NM_145493	ENSMUSG00000024519	Cplx4	A930004D23Rik|CPXIV|Gm957	complexin 4	protein-coding	3.50445888280244	3.32676366861039	3.39351686663123	3.36854696330173	3.34761489756899	3.38484167049484	3.77255689379728	3.50296678917742	0.382004640583217	0.453781848470092	0.7376390379157
Merged-chr5-108001129-4	chr5	108001019	108001219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14042.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	5.24084563967866	5.38501857682116	4.72425423869696	5.09070656621546	5.34880221413083	5.03320733140217	5.3582906099997	5.354189350064	0.278523359326831	0.384485076569753	0.686016676237897
Merged-chr5-140609759-4	chr5	140609674	140609874	+	954.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008494, intron 1 of 7)	intron (NM_008494, intron 1 of 7)	2433.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	4.8332156930638	4.83041663365676	5.00184079734174	5.24896875203192	4.55841345497111	4.81638885815924	4.34454065301326	4.63760708949483	-0.855017749797187	0.0173301956884887	0.116174985770478
Merged-chr14-22913102-4	chr14	22912993	22913193	+	993.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 6 of 6)	intron (NM_028275, intron 6 of 6)	181478.0	NR_033550	791307.0	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	-	predicted gene 10248	ncRNA	5.02103597029554	5.468577242166	5.64997886408393	5.34980602551598	5.4654817382338	5.23353259552657	5.03425950257273	5.08990853892526	-0.297172285298535	0.351474770157548	0.658893189148013
Merged-chr1-39577497-4	chr1	39577396	39577596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033135)	promoter-TSS (NM_001033135)	-149.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	8.56316011694478	8.92030378780871	8.98948572293294	8.6019623436326	8.61822940490548	8.79894879646857	8.87894526475616	8.47941773232791	-0.0974196628531556	0.58526787573025	0.818043296530108
Merged-chr5-114699170-4	chr5	114699056	114699256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER54A|LTR|ERVL	-8221.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	7.923587696086	7.91202158442183	7.81993882471835	8.00558311456361	8.01281300928663	8.15176980317807	8.15083227482615	8.04270292200396	0.213884974663947	0.175538376869143	0.470324705532213
Merged-chr16-58512523-6	chr16	58512616	58512816	+	978.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	10710.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	3.56800398403769	3.57885322969793	3.81840323768411	3.58569624536303	3.60404070135105	3.44025970337543	3.4990173849968	3.81602575232034	-0.120808856373863	0.804460986895346	0.92476806816837
Merged-chr9-75312182-4	chr9	75312074	75312274	+	742.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010313, intron 2 of 12)	intron (NM_010313, intron 2 of 12)	-1894.0	NR_073186	14697.0	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	3.28526553753714	3.41652804304031	3.22420627908565	3.55219292992055	3.36397889859959	3.33489805522108	3.54023659646629	3.34263479276801	0.030835983845955	0.953365530568532	0.983409686773593
Merged-chr1-120517755-4	chr1	120517660	120517860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12736.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	7.12300316290321	7.17870746485445	7.3767611298044	7.26300463573844	7.80187968698994	8.07435215340896	7.99479081530935	7.89847942340292	0.925326552550684	1.1556693036134e-07	4.90081455447848e-06
Merged-chr7-43614440-4	chr7	43614306	43614506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355131, intron 3 of 3)	intron (NM_001355131, intron 3 of 3)	7237.0	NM_028913	74400.0	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	5.64609474200181	5.47734749602545	6.30930581545967	6.08564684751376	5.65794618227058	5.62592256051054	5.29132128452876	5.61639956108615	-0.60694662054612	0.0490710425780385	0.229008262608444
Merged-chr9-89259122-4	chr9	89259019	89259219	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEg|LINE|L1	47735.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	5.89909162539271	5.51702919492434	5.87943309242342	6.10563495001693	4.93908263031574	4.9839379541193	5.54503791159872	5.4582283002781	-1.07078918664018	0.000763111915297305	0.010839661348822
Merged-chr7-121080197-3	chr7	121080119	121080319	+	732.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3219.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	3.28835746238993	3.06928990979634	3.06753468868713	3.13904318949315	3.16133799228092	2.97877821276613	3.05679455458507	3.00432992224395	-0.344960595578671	0.545296979606762	0.795819193623999
Merged-chr3-82800636-4	chr3	82800526	82800726	+	906.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75857.0	NM_001277170	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	4.78705130962652	4.71469684689926	5.39888272830627	5.41173827236886	4.56959875066521	4.80026557541072	4.84074692533492	4.74486899705738	-0.786099743007898	0.034013961271346	0.18200870164886
Merged-chr11-75254702-4	chr11	75254601	75254801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177708, intron 1 of 1)	intron (NM_177708, intron 1 of 1)	60708.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	5.54510365173508	6.07925591788704	5.16947748422434	4.89912532120379	5.69798401877178	5.51827528620966	5.86915562777131	5.54214247926784	0.281532649971081	0.43230518405095	0.722377468409878
Merged-chr11-108261947-4	chr11	108261864	108262064	+	933.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	L1MB2|LINE|L1	81924.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	4.23508323752134	4.02152759035776	4.42459922916908	4.20597579959361	5.15372815134799	4.64252721427556	4.56766140197925	4.58649154627317	1.22964720907908	0.00168270833729692	0.0204252211358215
Merged-chr13-63877298-4	chr13	63877192	63877392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013608, intron 16 of 18)	intron (NM_001013608, intron 16 of 18)	62052.0	NM_023507	76251.0	Mm.186610	NM_023507	ENSMUSG00000021470	Ercc6l2	0610007P08Rik|1700019D06Rik|9330134C04Rik|Rad26l|Sr278	excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2	protein-coding	6.05700949435321	6.4881865591855	6.48001852163456	6.74270023996504	7.12112032734066	6.97322001317661	6.93100249529667	7.26359312972029	0.839223959809148	0.000342040455483025	0.00564743622844496
Merged-chr2-119662897-4	chr2	119662811	119663011	+	710.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356467)	promoter-TSS (NM_001356467)	-77.0	NM_027175	69702.0	Mm.5390	NM_027175	ENSMUSG00000027305	Ndufaf1	2410001M24Rik|CGI-65|CIA30	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1	protein-coding	3.96787600278949	3.59832487026379	3.84231330404602	3.61713945612555	3.49427791399394	3.27070889566209	3.14886023863094	3.69955076979869	-1.09794323722853	0.0464719662505264	0.221511289476074
Merged-chr4-49620105-4	chr4	49620010	49620210	+	949.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11950.0	NM_001163263	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	4.46126443777684	4.81411659568129	5.01789314375439	4.42574925742285	4.56099571536979	4.80975218415994	4.80037598884169	4.71095234469241	0.0602638308997295	0.870824438090137	0.951454597737699
Merged-chr8-54530086-4	chr8	54529991	54530191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029701)	promoter-TSS (NM_029701)	-93.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	9.27162776391605	9.36172868478652	9.33667679745193	9.5106530819102	9.30117750471842	9.26533280711897	9.44978623492261	9.17519339698128	-0.0920621967837037	0.525144261750599	0.783229855070132
Merged-chr18-70437655-4	chr18	70437567	70437767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34787.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	5.14132603023674	4.9753208024577	5.50862035017594	5.6058776396405	5.23363639159168	5.57201201703865	5.60596989109013	5.53095321166335	0.241968349977162	0.446386628802109	0.732088059065582
Merged-chr2-139841498-2	chr2	139841398	139841598	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159640, intron 13 of 13)	intron (NM_001159640, intron 13 of 13)	163320.0	NM_001276489	319909.0	Mm.41113	NM_001126490	ENSMUSG00000074766	Ism1	5430433G21Rik|Ism	isthmin 1, angiogenesis inhibitor	protein-coding	3.05548229810103	3.22894361378496	2.98724717848581	3.30172290066268	3.35510295163167	3.52024186821743	3.28650077189541	3.24090950922828	0.701100594853892	0.209949204015759	0.514484230514723
Merged-chr11-22969686-4	chr11	22969599	22969799	+	954.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144514, intron 1 of 2)	intron (NM_144514, intron 1 of 2)	-2306.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	4.92487856044409	5.18792667750472	4.96096499528345	4.56009890603108	5.17587839582177	4.78275030876827	5.06784365575877	4.99188706709271	0.210020915716105	0.545880396387853	0.796010912204515
Merged-chr8-70477042-4	chr8	70476978	70477178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122830)	promoter-TSS (NM_001122830)	-135.0	NM_178771	234378.0	Mm.187090	NM_172052	ENSMUSG00000055707	Klhl26	C630013N10Rik|Klkl26	kelch-like 26	protein-coding	7.65366269451011	7.43465457771766	6.99241574419836	7.20628305744721	7.60874385257224	7.87216680453942	7.63360960235102	7.51174793242127	0.425164502409449	0.0404307272087417	0.203164047440242
Merged-chr9-50866025-3	chr9	50865931	50866131	+	876.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286553, intron 5 of 16)	MTC|LTR|ERVL-MaLR	9107.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	3.70032301137586	4.0101926303347	3.64456039197187	3.94918974742735	3.57541992139517	3.9266014268694	3.97691714333658	3.64265324339242	-0.168815911553774	0.723785382942001	0.889750263763405
Merged-chr17-74431711-4	chr17	74431591	74431791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 8 of 8)	MTE2b|LTR|ERVL-MaLR	27417.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	7.87821070074639	7.73198663114184	7.89380862739862	7.68038457977785	7.78830803348749	7.88800554427915	7.97707888224876	7.39957319501903	-0.0165935126162757	0.930198289800978	0.974817568494925
Merged-chr8-11758875-2	chr8	11758775	11758975	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017402, intron 1 of 19)	intron (NM_017402, intron 1 of 19)	545.0	NM_001113518	54126.0	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	3.15428570870134	2.92923956516456	3.15473223606348	2.4677316269511	3.00330825383628	3.14713941011031	3.19795925416268	3.36652572785867	0.906394097581489	0.179936983725286	0.476262128979061
Merged-chr6-127472254-4	chr6	127472147	127472347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181402, intron 4 of 8)	intron (NM_181402, intron 4 of 8)	18620.0	NM_001346512	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	7.12165249004688	6.99082191250994	6.83289358955046	7.17262590062489	7.00945373488124	6.79495729822135	7.07581509571238	6.77003661903248	-0.166459212275782	0.411848028959563	0.707206846320628
Merged-chr3-121307750-4	chr3	121307624	121307824	+	924.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024178, intron 2 of 3)	intron (NM_024178, intron 2 of 3)	15984.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	4.4619099760241	4.44421851936659	4.37891148139503	4.62470336682545	4.44896134474746	3.91126556292149	4.4421278858956	4.49956235849292	-0.317051904448306	0.430112587333666	0.72074261020842
Merged-chr5-137338417-4	chr5	137338314	137338514	+	802.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1554.0	NM_001359611	83704.0	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding	3.6698431402146	3.81542715991668	3.67032353585159	3.66564758631612	4.02087099149783	3.95496471133646	4.27777372593588	3.66838054832444	0.833428965562637	0.0681410189403919	0.278653609994353
Merged-chr2-142901565-4	chr2	142901473	142901673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081133)	promoter-TSS (NM_001081133)	-109.0	NM_001355123	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	7.74401127670047	7.7997440236845	7.53536664358017	8.01749504480763	7.90447241968974	7.83092851183061	7.92794858024342	7.81807745365744	0.0965127897209627	0.590066006630356	0.820738632318576
Merged-chr9-123815648-4	chr9	123815543	123815743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 14 of 17)	intron (NM_001110253, intron 14 of 17)	9166.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	6.42137320338796	6.61283378136243	6.30796715529108	6.46509862480299	6.93286454174048	7.08993754091977	6.63628741140637	6.58832080345125	0.53134036683858	0.0174524283538654	0.116745756706363
Merged-chr2-32537768-4	chr2	32537660	32537860	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153560, intron 1 of 10)	MIRb|SINE|MIR	2401.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	4.47155294973501	4.39324339051511	4.38572395434936	4.79162542853074	4.5342390228074	4.15353790586684	4.36632720539368	4.79840986722074	-0.110232300702483	0.784321354468842	0.916033204453207
Merged-chr4-141419565-4	chr4	141419456	141419656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1223.0	NM_013868	29818.0	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	6.24460931063305	6.11517306389547	6.10754914473246	6.03947984706388	5.95295507697144	6.4390270985454	6.30337805184078	6.16421653240656	0.144089987497685	0.548331069299745	0.797369804316551
Merged-chr17-26252957-4	chr17	26252843	26253043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025881)	promoter-TSS (NM_025881)	33.0	NR_037905	66978.0	Mm.440216	NM_025881	ENSMUSG00000024188	Luc7l	1810045C04Rik|2410018D03Rik	Luc7-like	protein-coding	5.77810887628308	5.48525765932264	5.65865667371083	5.7657271970529	5.41096539336411	5.72818134896561	5.46961742382264	5.65465754630511	-0.200307417875334	0.458710280460386	0.741485810075879
Merged-chr5-134099692-4	chr5	134099606	134099806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030719)	promoter-TSS (NM_030719)	-42.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	6.98647772738899	7.08052409346055	7.01222509678988	6.74786060150121	6.73867749355181	6.7934927385322	7.11414114969941	6.82465390566675	-0.111809866040637	0.592139697638548	0.821965238571176
Merged-chr10-44533503-3	chr10	44533413	44533613	+	720.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74765.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	3.432037205729	3.41050560017865	3.52695469994512	2.89688095858919	2.78742303538322	3.21332144987647	3.02358089037259	2.8180765628199	-1.49150219358309	0.023949168050522	0.144280815291418
Merged-chr4-132011660-4	chr4	132011538	132011738	+	886.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	37440.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	3.78536561443699	3.73593288155188	3.61741601893054	3.87526773753613	4.02244678682497	4.05666178832502	3.71760564741998	3.97860296106638	0.523476995874987	0.244825462834286	0.555884768862855
Merged-chr8-122923085-4	chr8	122922962	122923162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	74688.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	6.08280895538851	6.1535038902552	5.75074644576006	6.20238396321293	5.81763067253202	6.5212745417528	6.3804578670162	5.94735816469997	0.188540463305264	0.497177147362715	0.766982020988234
Merged-chr7-81860261-4	chr7	81860147	81860347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111910, intron 1 of 7)	intron (NR_111910, intron 1 of 7)	1246.0	NM_145375	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	7.25588952439602	6.66519485138028	7.18600847035118	7.34604905069731	6.35949326360438	6.36623475591905	6.8575180007293	6.762676219105	-0.759730195519433	0.0020351086517236	0.0237043035053239
Merged-chr7-120128233-4	chr7	120128107	120128307	+	756.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17084.0	NM_011775	22787.0	Mm.6510	NM_011775	ENSMUSG00000030911	Zp2	Zp-2	zona pellucida glycoprotein 2	protein-coding	3.4069881970293	3.23890258518243	3.2860801434405	3.60089743429545	3.36058621538562	3.63449660596958	3.60513127632162	3.61847120527028	0.494886442551742	0.345410061878961	0.653728716702946
Merged-chr13-102665365-4	chr13	102665262	102665462	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-28185.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	5.07488790359846	5.37191649909937	4.96498719964531	5.20387660676456	5.43932176118541	5.41508314408142	5.33327291093775	5.23785091324783	0.347120538300089	0.239145320329264	0.549612081867723
Merged-chr2-119897528-3	chr2	119897426	119897626	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013720, intron 1 of 23)	CpG	298.0	NM_013720	29808.0	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	6.57733979040803	6.80241373226994	6.49467700918269	6.41593372408951	6.79882118729179	6.68838782165069	6.6829931244155	7.03045550664821	0.337514795898946	0.120272527449996	0.383878670524338
Merged-chr1-151625457-4	chr1	151625359	151625559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	L1MD|LINE|L1	54086.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	6.48750306300646	6.22174647386492	5.57307545475697	6.02010257631119	6.02676048221256	6.09477362426509	5.84107038294575	5.89070638255107	-0.228640472746746	0.415470543120686	0.709723955764311
Merged-chr4-19872150-4	chr4	19872000	19872200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50466.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	4.7436502232808	4.62174890605487	4.70995332430792	4.8184741662863	4.37316205645501	4.21906878381005	4.3740693395251	4.14526328172722	-1.01714126164297	0.0064056136584683	0.0569646644922683
Merged-chr1-93081204-4	chr1	93081060	93081260	+	958.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294150, intron 1 of 46)	intron (NM_001294150, intron 1 of 46)	1320.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	4.21238568763291	4.78266319366829	4.11442345866785	3.6727039313369	4.40428734212899	4.4346050999718	4.44923787310052	4.16211776546794	0.260566148362	0.583140484045823	0.816913137451242
Merged-chr13-59867399-4	chr13	59867277	59867477	+	954.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44230.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	4.33822893297438	4.3651794666791	4.43002608267762	4.76691422810789	4.78282639712383	4.55921609828242	4.57491211434048	4.66865755391442	0.319610789618601	0.396411232604521	0.69519327480908
Merged-chr11-107452295-2	chr11	107452195	107452395	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	Lx7|LINE|L1	18425.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	3.50734147569733	3.3714209234091	2.96928959071634	3.10930251860965	3.49865149239415	3.38257044712462	3.49307036340053	4.27498279157814	1.48479244311528	0.0136258487781146	0.0981554792204652
Merged-chr19-29485475-4	chr19	29485389	29485589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36498.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	6.0878306574778	6.18352600941546	6.9903129168061	6.32377702260301	6.23646219326467	6.00591557288608	6.19990582343943	5.8735372789538	-0.530650379383428	0.0640164399918559	0.268748226610458
Merged-chr12-35117717-4	chr12	35117607	35117807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 17 of 25)	intron (NM_001014973, intron 17 of 25)	70518.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	5.76242554639541	5.32444493340047	5.71479129970189	6.16172951254047	5.76563587001845	5.42073596253228	5.55621032196296	5.82888968194923	-0.224600769657083	0.466547222833444	0.746420287776482
Merged-chr4-150281538-4	chr4	150281425	150281625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085492)	promoter-TSS (NM_001085492)	-391.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	6.96792456199847	7.07833455829778	6.6707151846814	6.63082231253131	7.12960625398674	6.92599390774107	7.41832615670762	6.64983645693176	0.304605385705018	0.205240551180402	0.508859472252119
Merged-chr16-33829565-4	chr16	33829430	33829630	+	938.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010580)	promoter-TSS (NM_010580)	-135.0	NM_010580	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	4.56337245807464	4.29573683891972	4.40687469479998	4.23830682069081	4.18980048436565	4.61747481057774	4.30099017645584	4.40407165486149	0.0192003628887123	0.960661346443076	0.986018439623899
Merged-chr15-78450303-4	chr15	78450193	78450393	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355601, intron 10 of 17)	intron (NM_001355601, intron 10 of 17)	18341.0	NM_001355601	71753.0	Mm.34056	NM_027902	ENSMUSG00000016942	Tmprss6	1300008A22Rik	transmembrane serine protease 6	protein-coding	5.71960031202306	6.09480620902494	5.41818787845639	5.37849355514054	5.83444227632117	6.09634920756953	5.15583264221154	5.47490791056434	0.0120490609407717	0.971881081780419	0.989768551725772
Merged-chr13-59669025-4	chr13	59668925	59669125	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035122, intron 1 of 9)	intron (NM_001035122, intron 1 of 9)	6759.0	NM_001035122	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	5.64101041943731	5.57460921274189	5.61643117362334	5.8669652202481	5.50702585730843	5.14025196598077	5.7101553082493	5.58639973967766	-0.316131789295081	0.26652312397537	0.578168031252068
Merged-chr1-131963834-4	chr1	131963735	131963935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177628, intron 1 of 4)	intron (NM_001177628, intron 1 of 4)	920.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	6.50723679507441	5.88722590925174	6.52432249195772	6.92214740109218	6.25260346068081	6.1332691588213	6.40950901873393	6.36849440218473	-0.341194504356389	0.222289608416287	0.530315094234949
Merged-chr12-4366170-3	chr12	4366079	4366279	+	892.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010881, intron 2 of 22)	ORR1E|LTR|ERVL-MaLR	111003.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	4.35451323663338	4.31554076976719	4.51295981576112	4.52578229515581	4.11755974499591	3.97021122590104	4.10854449218831	4.43366790579621	-0.653645565897457	0.104181101888235	0.354825908000512
Merged-chr5-110448594-4	chr5	110448488	110448688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142642)	promoter-TSS (NM_001142642)	-85.0	NM_001142642	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	7.98993918781682	7.95185813857842	7.85410582263443	7.91639839326278	8.01583117613177	8.17563838011794	8.32719964891417	7.90108555648183	0.23712759458199	0.163100046636328	0.452706698401916
Merged-chr8-121934648-3	chr8	121934568	121934768	+	822.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007608, intron 2 of 6)	intron (NM_007608, intron 2 of 6)	10244.0	NM_007608	12352.0	Mm.116761	NM_007608	ENSMUSG00000025317	Car5a	CAV|Ca5a|Car5	carbonic anhydrase 5a, mitochondrial	protein-coding	3.78707542664153	4.04347976352683	3.83968593357828	3.69381928955731	3.66600791011683	3.67392135130453	3.92076753510521	4.19095093267616	0.10128579159302	0.829682211731446	0.934618333601978
Merged-chr8-88653519-3	chr8	88653424	88653624	+	655.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 2 of 12)	intron (NM_145857, intron 2 of 12)	6177.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	3.34276797275532	3.00646525349531	3.22153423395427	3.53111820269328	3.71512380963961	3.62270224152606	3.33074437778283	3.28214199597001	0.689605167004166	0.231345852486854	0.540831366410565
Merged-chr8-115420308-4	chr8	115420208	115420408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	286586.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.19455146924994	5.09893740540229	5.09600476306276	5.12355883625312	5.42640250905926	5.30480264949195	5.10507878251542	5.45019828152723	0.377888845498333	0.195044718585755	0.495781550312065
Merged-chr9-20975837-4	chr9	20975727	20975927	+	829.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010333, intron 1 of 1)	intron (NM_010333, intron 1 of 1)	966.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	3.87590508870466	4.56584073805661	4.19639911282405	3.72957042963474	4.42807466225782	4.46107316718358	4.26839124570185	4.48858491063344	0.694487762824781	0.121186288791528	0.385429796688657
Merged-chr13-78163578-2	chr13	78163478	78163678	+	947.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163419, exon 10 of 10)	exon (NM_001163419, exon 10 of 10)	32871.0	NM_001347538	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	3.76883212760884	3.66614944259528	3.56009064102608	3.73381879368231	3.90948045228356	3.42376952604421	3.65444900126663	3.71808724740284	0.0358263278838653	0.941125734300669	0.978762669971416
Merged-chr6-120090663-4	chr6	120090562	120090762	+	847.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2718.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	4.39404879743355	4.30347300357957	3.99291690065653	4.21807262433722	4.27508111921841	4.31307889014303	3.86894692835195	3.93728549132927	-0.294137274012626	0.492677399276569	0.763658218913778
Merged-chr1-131393876-3	chr1	131393779	131393979	+	829.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-114316.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	4.19888737887363	4.06795454977568	4.32874967041965	4.158003656	4.05531778575312	4.0176088636364	4.6283108879971	4.00190963996721	0.0374008696058973	0.930842077497933	0.975162019225029
Merged-chr16-11875411-4	chr16	11875311	11875511	+	944.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146067, intron 2 of 3)	intron (NM_146067, intron 2 of 3)	-25953.0	NR_033509	791359.0	Mm.227592	NR_033509	ENSMUSG00000055015	Gm9961	-	predicted gene 9961	ncRNA	3.7831959288839	4.32050172619201	3.71681259321177	4.61586690768597	4.37439877215825	4.65199038591099	4.46095632965692	4.47928218355129	0.729766400464792	0.1422851674719	0.419796840696448
Merged-chr3-95660386-2	chr3	95660286	95660486	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008562, intron 2 of 2)	intron (NM_008562, intron 2 of 2)	1665.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	3.20790023644573	3.30010633073736	3.00984352765926	3.05015890864022	3.6703295231873	3.54973721727506	3.19682626397833	3.26668394305545	1.07413294786222	0.0525119956543361	0.238788177261866
Merged-chr11-109420225-4	chr11	109420120	109420320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5726.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	6.21384491460411	6.38069698932676	6.65885143906488	5.9240917895372	5.89710139613439	5.94163967186892	5.83648401042825	6.24797688050416	-0.493745056315286	0.071409630499384	0.286811087310442
Merged-chr18-13787108-4	chr18	13786918	13787118	+	799.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360804, intron 5 of 7)	intron (NM_001360804, intron 5 of 7)	185715.0	NM_001360804	225207.0	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	3.8166930693428	3.24726655011297	3.8173129089006	3.50189639166761	3.46176333331657	3.40989184213762	3.46176113209143	3.15967169400542	-0.769172775082103	0.164658654729093	0.454872249668637
Merged-chr15-13171303-4	chr15	13171200	13171400	+	810.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007666, intron 1 of 11)	intron (NM_007666, intron 1 of 11)	2375.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	4.18976166063778	4.67153618063515	4.71282371005642	3.74746344146794	4.3425364944363	3.8165765069431	3.92068897264236	3.93442280195926	-0.889663828794945	0.0817580347330832	0.310354389326763
Merged-chr4-114917290-4	chr4	114917208	114917408	+	782.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030721, intron 3 of 3)	intron (NR_030721, intron 3 of 3)	8019.0	NR_030721	100040736.0	Mm.231287	NR_030721	ENSMUSG00000085399	Foxd2os	9130206I24Rik	forkhead box D2, opposite strand	ncRNA	3.39935096307563	3.37236346968339	3.34392717503068	3.49469690812997	3.5495610095563	3.45571065599611	3.21430163952206	3.22327218452606	-0.116674992089262	0.825066662493684	0.932930565831813
Merged-chr8-125240753-4	chr8	125240711	125240911	+	921.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 11 of 12)	B3A|SINE|B2	186616.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	4.29623322233573	4.26642750720427	4.49836787588793	4.02612663563771	4.10266024298406	4.33338094663485	4.23361767511987	4.37855274513661	-0.0166531155502444	0.967272678889925	0.988492656396979
Merged-chr9-21149957-4	chr9	21149852	21150052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016742)	promoter-TSS (NM_016742)	-46.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	7.30298213792503	7.30942199860367	6.93540404730326	6.86925616710638	6.97180450525687	7.23951943486126	7.17486503348767	6.88967547132004	-0.0537218116703789	0.801880333068392	0.923576702709953
Merged-chr5-64835460-4	chr5	64835372	64835572	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31949.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	6.16340182839142	5.55809351191629	5.56248974024273	5.44213361119051	5.80068821456685	5.59436870355612	5.75965709974008	5.24838777435341	-0.131061132778958	0.675979151913286	0.867014726144001
Merged-chr13-46724581-2	chr13	46724481	46724681	+	953.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_175749, intron 1 of 21)	intron (NM_175749, intron 1 of 21)	3268.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	3.0679215974415	2.90383673803258	2.67361546260762	2.64373130678071	3.08360998062813	3.18060822052738	2.93861464113256	3.06661702431037	1.05488069104292	0.0874437927500521	0.322502726855605
Merged-chr10-67004937-4	chr10	67004839	67005039	+	836.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110511)	promoter-TSS (NR_110511)	-136.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	4.34908916488316	4.45727942881118	4.02618210866691	4.10419506142426	4.07479748276076	4.43614480579615	4.10958954334116	4.1723666155703	-0.102117055543018	0.805303974501369	0.925171083261684
Merged-chr17-12170438-3	chr17	12170342	12170542	+	973.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026644, intron 2 of 8)	intron (NM_026644, intron 2 of 8)	51158.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	3.05128929748823	2.87812253302404	3.05164299412311	2.3399441129181	4.39393302794979	4.56173275051685	4.2983657198607	3.48799110589379	6.9279460492565	2.29044803752419e-14	3.38240250752976e-12
Merged-chr1-124077742-3	chr1	124077640	124077840	+	838.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32181.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	3.43977116029474	3.50009406961889	3.68405685286124	3.71861209920796	4.14536227633245	4.19214395421823	3.7752346440936	3.78887054969912	1.12539111695881	0.0190111368375747	0.123657221236359
Merged-chr7-92561334-8	chr7	92561238	92561438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001162918, exon 1 of 8)	5' UTR (NM_001162918, exon 1 of 8)	189.0	NM_001162918	66365.0	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	6.2867387289704	6.37351467368336	7.23937699892954	6.40097493341671	6.33702697818818	6.44609184001044	6.56769429905207	6.44977479746214	-0.263798125812621	0.343630766073194	0.652264111594778
Merged-chr15-9131722-4	chr15	9131636	9131836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	8718.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	7.89565486527082	8.11406136198333	8.04271192318024	8.27372492720123	7.94163618393919	8.08916441390017	7.98454460820379	7.71833032265424	-0.202773620920781	0.250079194855454	0.561176143917657
Merged-chr11-114896722-3	chr11	114896633	114896833	+	783.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170758, intron 3 of 6)	intron (NM_170758, intron 3 of 6)	6692.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	4.19701436240907	3.82910864974444	3.71255597183726	3.45207423356784	3.76739776094206	3.71961955390086	3.4016359544928	3.86204773696516	-0.34892679918304	0.503789514638375	0.770586308422583
Merged-chr11-53770388-4	chr11	53770276	53770476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159396)	promoter-TSS (NM_001159396)	-97.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	7.1338038386885	7.80429042610587	7.3721564914391	6.70459575338411	7.5693066542123	7.50940049872734	7.15687004201163	6.83777815057596	-0.0107801346616055	0.969250920380188	0.988899985883694
Merged-chr10-118866051-4	chr10	118865938	118866138	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	2865.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	5.57214401026609	5.83720662560639	5.01051930866221	4.4324412678234	5.72592668679381	5.77191405051939	5.26451400468711	5.28737430427867	0.367899170356402	0.369209147803101	0.673491314105063
Merged-chr4-43524353-4	chr4	43524260	43524460	+	852.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009416)	promoter-TSS (NM_009416)	-806.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	4.74657150498652	4.04471332416832	4.3099392114214	4.02146001217969	4.55000454635091	4.88313852503882	4.29079368257652	4.67502836529092	0.710278919065795	0.0941516865036063	0.335643112200218
Merged-chr6-99665624-4	chr6	99665561	99665761	+	980.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025829, intron 1 of 6)	intron (NM_025829, intron 1 of 6)	1110.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	4.6028350499651	4.60269328988255	4.18873274532174	4.51235118615462	5.19761653984735	4.47218891774058	4.62049744053248	4.38670345542811	0.515123125804231	0.210398214157767	0.51490233747759
Merged-chr10-67984785-3	chr10	67984675	67984875	+	673.611145	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001359319, intron 1 of 11)	intron (NM_001359319, intron 1 of 11)	5205.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	4.35824909962838	4.39317528495793	4.06738147705569	4.10027970058746	4.59965005569579	4.48793743961731	4.50081672070376	4.4402926337591	0.667666992013679	0.0771775657571143	0.300367540763609
Merged-chr5-100587818-4	chr5	100587706	100587906	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15601.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	4.81000684882849	4.96793319637042	4.92230193682952	4.92350182674352	5.17170501307711	5.09530828040995	4.78831325665395	4.91901231622746	0.19705804810793	0.537674003509178	0.791199228789559
Merged-chr8-106004882-3	chr8	106004775	106004975	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-6603.0	NM_025518	66369.0	Mm.287500	NM_025518	ENSMUSG00000031901	Dus2	2310016K04Rik|Dus2l	dihydrouridine synthase 2	protein-coding	3.46560170033225	3.35624245834134	3.55758361975258	2.88128480036383	2.67522199529315	2.98928640344186	2.86809163480073	3.14276682818668	-1.70321710574577	0.0123297577898681	0.0915809067854559
Merged-chr3-126696767-4	chr3	126696693	126696893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 3 of 18)	intron (NM_001025438, intron 3 of 18)	99842.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	6.05955339023774	6.06774726280734	6.03852914369524	6.53735087526688	6.2811312268714	6.23719066408502	6.33721065339539	6.18122142487931	0.0649667589948503	0.795202965712129	0.920802861500303
Merged-chr17-25873564-2	chr17	25873464	25873664	+	771.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1936.0	NM_026686	68347.0	Mm.35098	NM_026686	ENSMUSG00000025731	Mettl26	0610011F06Rik	methyltransferase like 26	protein-coding	3.1531581746211	2.99504075555454	3.15354762538784	2.94376840886949	3.40962405961647	3.32664017692113	3.36458992232098	3.32428860263067	1.1676354900904	0.0290993342606311	0.163990880777019
Merged-chr2-167004642-2	chr2	167004541	167004741	+	680.666626	f0_balb.idr|f0_c57.idr	Intergenic	B3|SINE|B2	-8342.0	NM_001109905	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	3.73895542227639	3.59807562323157	3.73948749328262	3.71203544232904	3.8178848592907	3.7511289736025	3.50701349291929	3.78685540471456	0.0822962842697651	0.859213948025359	0.946659488677125
Merged-chr18-75473425-4	chr18	75473337	75473537	+	878.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	L1MB2|LINE|L1	-41208.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	4.19945195940202	4.37211629507868	4.4208911660248	4.76626875750698	4.23803792941631	4.05740556232475	4.22898811779683	4.37690203506919	-0.584702894193722	0.1549781423564	0.440437163410773
Merged-chr2-156524271-4	chr2	156524184	156524384	+	968.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291122, intron 14 of 20)	intron (NM_001291122, intron 14 of 20)	-23292.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	5.26196444625538	5.12048218748508	4.60722349945461	4.89247809554605	5.46934920143884	4.83517759246755	5.05432237411985	5.2009568193718	0.348595645282371	0.319235681504419	0.631103362694156
Merged-chr2-84454230-3	chr2	84454130	84454330	+	762.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355271, intron 3 of 8)	intron (NM_001355271, intron 3 of 8)	19944.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	3.56877279878636	4.06271655641848	3.6254427147337	3.95401910503125	3.78605689316078	3.62613808876561	3.30746040751335	3.62348359542914	-0.680598421157115	0.190870087264108	0.490284569083293
Merged-chr1-171561937-3	chr1	171561823	171562023	+	758.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018729, intron 1 of 8)	intron (NM_018729, intron 1 of 8)	2730.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	3.25877764281761	3.40359742228738	3.41675874364866	3.49195467196277	2.92385434034976	3.12356778792522	2.78940368462616	3.1406985409933	-1.65265740047773	0.00682630043557509	0.0598017524558522
Merged-chr11-103359859-4	chr11	103359759	103359959	+	909.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_183288, exon 3 of 3)	3' UTR (NM_183288, exon 3 of 3)	3833.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	4.47549183581148	4.131044122632	4.30311005587752	4.72056816959955	4.50065370485135	4.33366735494274	4.45566051602985	4.47332975914602	-0.00144363930394548	0.997104615702735	0.998859677649499
Merged-chr8-40408112-3	chr8	40408029	40408229	+	716.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15686.0	NM_178395	70546.0	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik|DHHC-2	zinc finger, DHHC domain containing 2	protein-coding	3.25115894377306	3.41935847700536	3.25162290522135	3.54543711149806	2.78136165519103	2.75437790021195	2.87218989801046	3.01456992249311	-2.37527462166717	0.000377266156694055	0.00612672319583074
Merged-chr7-99469769-4	chr7	99469660	99469860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028145, intron 2 of 6)	intron (NM_028145, intron 2 of 6)	3756.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	5.59959573129377	5.23175260278509	5.73130670000171	6.2403913106097	5.8237145168544	5.43738798745464	5.67722234519572	6.10942188888219	0.0243749730978051	0.942210481941067	0.979062797089676
Merged-chr4-156234400-2	chr4	156234300	156234500	+	990.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198305, intron 1 of 11)	intron (NM_198305, intron 1 of 11)	457.0	NM_198305	231003.0	Mm.423038	NM_198305	ENSMUSG00000078485	Klhl17	AL022703|BC058738	kelch-like 17	protein-coding	3.06882791550269	2.96252735143869	3.23429015556295	2.78463703188542	3.24734610838543	3.05529341965549	2.87112974630898	2.94474671887152	0.120786859019636	0.84409007966305	0.94088019607581
Merged-chr11-72207504-4	chr11	72207400	72207600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026559)	promoter-TSS (NM_026559)	-18.0	NR_155066	74477.0	Mm.289697	NM_028963	ENSMUSG00000020807	4933427D14Rik	C85113|Kiaa0753|MNR	RIKEN cDNA 4933427D14 gene	protein-coding	5.80032430193091	5.46208381886719	5.77855512227816	5.70088368944414	5.53399004251772	5.88104444630606	5.43970469821888	5.33981672975613	-0.217659468471966	0.438851890888001	0.726734768100838
Merged-chr8-117342587-3	chr8	117342493	117342693	+	944.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-6577.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	3.70871061526449	3.50927088772247	3.24985747560646	3.21051996448142	3.30192707803394	3.4240233883519	3.04313221178322	3.24823437498925	-0.600802994748465	0.290231270263445	0.602406731765695
Merged-chr1-177260565-4	chr1	177260457	177260657	+	951.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11790.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	4.72161079686896	4.83092931336604	4.68267785323193	4.65479574534173	4.97768944908559	5.07482557456186	4.70032023157924	4.6387516382155	0.297056274624061	0.381227643646468	0.683526515664875
Merged-chr4-137468620-4	chr4	137468506	137468706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008305)	promoter-TSS (NM_008305)	-197.0	NM_008305	15530.0	Mm.273662	NM_008305	ENSMUSG00000028763	Hspg2	AI852380|Pcn|Plc|per	perlecan (heparan sulfate proteoglycan 2)	protein-coding	7.04952853477261	6.9687941032853	6.55340319503437	6.65960644545629	6.97039916599614	6.66163020298652	6.46830258093949	6.79419713612998	-0.104403230497813	0.652051441632939	0.854348672565858
Merged-chr8-126666655-4	chr8	126666507	126666707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73171.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	6.47704713108924	6.40458835408796	6.5437195080865	6.61935588263822	6.2299641673391	6.49372089268916	6.54166895026355	6.53904831942256	-0.10603043011311	0.627411692820659	0.841151302397407
Merged-chr16-45274765-2	chr16	45274659	45274859	+	677.833374	f0_c57.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	50422.0	NM_177584	208154.0	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	2.36898494054997	2.31831213158492	2.36917208230463	2.05099640071966	3.18992601877026	3.0593362256022	3.14078736293893	3.0514461076104	7.03885224779855	5.50825275669787e-12	5.24862012006691e-10
Merged-chr5-27794099-2	chr5	27793986	27794186	+	885.833374	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2536.0	NM_018878	55982.0	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	3.3451965206033	3.49451404731755	3.69010295228534	3.02200846267248	4.36602868028383	4.24123689996167	4.3327301270778	4.61870087061682	3.00416692736096	1.18286213241761e-09	7.52412365713613e-08
Merged-chr5-120513530-1	chr5	120513430	120513630	+	840.0	f0_balb.idr	intron (NM_001177595, intron 2 of 13)	L2a|LINE|L2	2338.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	4.26669487631772	4.79124310665422	4.53379848954465	4.45903785998344	4.7140376071446	4.62302093273226	4.47245455345068	4.31271948932671	0.0439516908961667	0.908329848510652	0.966039998613106
Merged-chr11-22930292-3	chr11	22930160	22930360	+	777.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361661, intron 2 of 2)	ORR1B1|LTR|ERVL-MaLR	-41745.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	3.78934393707639	3.50808869401026	3.64129688832074	3.8768253665266	3.6213886238016	3.52560488867643	3.57384903723907	3.58570609359193	-0.4455017114013	0.358118632269243	0.664161702092038
Merged-chr3-89387818-3	chr3	89387721	89387921	+	779.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355206)	promoter-TSS (NM_001355206)	-150.0	NM_001355206	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	3.35694444921482	2.9751614522742	3.13252193090739	2.99550499486405	3.22374352201301	3.18042441403252	3.39302705876271	3.19085059484798	0.518627699427425	0.35247619485603	0.659568292805988
Merged-chr19-4962128-5	chr19	4962100	4962300	+	943.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025553)	promoter-TSS (NM_025553)	-106.0	NM_025553	66419.0	Mm.28494	NM_025553	ENSMUSG00000024902	Mrpl11	2410001P07Rik|L11mt	mitochondrial ribosomal protein L11	protein-coding	5.01379574801986	5.21398817559692	5.27747154711676	5.07485734703102	5.16962012292909	5.47890693435531	5.12762457689682	5.27380689294357	0.221087697823459	0.45904508746618	0.74170765693035
Merged-chr12-69451111-2	chr12	69451001	69451201	+	854.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24449.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	1.85254243148045	1.89148509486148	2.0904159058385	1.66121584282667	2.13581633453808	2.2689240430203	2.28289833832759	2.35284138726517	3.17454769273644	0.00238209467869636	0.0267394917418275
Merged-chr18-49777658-4	chr18	49777546	49777746	+	846.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22045.0	NM_026854	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	4.10222015555213	3.80390810148563	4.00172153676873	4.33177757998135	4.21962367763259	4.36799160209072	4.49279946822557	4.10038043514519	0.521485145339902	0.228525144485731	0.537387798055761
Merged-chr9-122337703-3	chr9	122337612	122337812	+	937.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13904.0	NR_152865	67469.0	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	3.55569827312252	3.59845499681493	3.75275671661351	3.46982184991164	3.36291928400925	3.50030219322639	3.37402111593156	3.55419150987227	-0.483398724323143	0.334235517971695	0.644805241742718
Merged-chr7-107683829-4	chr7	107683715	107683915	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357437, intron 2 of 23)	intron (NM_001357437, intron 2 of 23)	-8028.0	NM_001357438	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	5.82675293082822	5.68016982016064	5.9846384849421	6.53536664589528	5.63039060073053	5.37835105313802	5.95391337152394	5.79955788487976	-0.58094403533628	0.0640409410244818	0.268803522890765
Merged-chr11-97994764-5	chr11	97994611	97994811	+	948.9381099999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207231, intron 2 of 5)	intron (NM_207231, intron 2 of 5)	1462.0	NM_207231	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	4.6324277363677	4.63085748253672	4.41953455408008	4.32150907452191	5.05347503949754	4.45339261573874	4.85849054364864	4.63014601304837	0.612595389932325	0.0994752347480712	0.345915664377007
Merged-chr3-152763554-6	chr3	152763415	152763615	+	939.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025662, intron 9 of 10)	Lx8|LINE|L1	49415.0	NM_025662	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	3.47949162331282	3.59092361758328	3.35865348257035	3.71435908000187	3.39420290048914	3.59568504196751	3.46695202726331	3.95497065363122	0.2075314715765	0.691172207961998	0.87434437438054
Merged-chr12-83502390-3	chr12	83502269	83502469	+	760.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14633.0	NM_058212	70127.0	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	3.04402844016338	2.98918712667557	2.7165894137853	3.05539815852483	2.96068398521935	3.03036159834982	3.14241160788098	2.98361169806642	0.270484416999539	0.65191554980107	0.854262724263892
Merged-chr14-30322510-3	chr14	30322410	30322610	+	743.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	30976.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	3.52285034216138	3.67168591511735	3.6326289855893	3.76128774972949	3.71751267142672	3.57890135524112	3.61821133566451	3.52148753495262	-0.134301653375181	0.778405762296453	0.913734910277541
Merged-chr3-119815280-2	chr3	119815180	119815380	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-31892.0	NM_019550	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	3.3923510393845	3.33362550996488	3.56296578849431	3.91516948094616	3.36900633584054	3.44441937727124	3.38072260714628	3.84494195888334	-0.198659700732049	0.720187875672577	0.888180968925399
Merged-chr2-166041897-4	chr2	166041808	166042008	+	980.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 2 of 22)	intron (NM_008679, intron 2 of 22)	49271.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	5.17569351185018	5.31400628200393	4.95830465678532	5.55291978090583	5.44256378434606	5.50727380564672	5.41962354275674	5.20605148734697	0.191386996224117	0.537949125021495	0.79126455418755
Merged-chr18-38372659-4	chr18	38372578	38372778	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-33685.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	4.17164353816461	4.68981599854529	3.95152176324318	3.99368762205518	4.78385326072615	4.69822797161409	4.57988360028746	4.11794101573835	0.773920648216155	0.0823694608200042	0.311590102725309
Merged-chr4-24897041-4	chr4	24896926	24897126	+	862.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1057.0	NM_026742	68493.0	Mm.204831	NM_026742	ENSMUSG00000028261	Ndufaf4	1110007M04Rik|3000003G13Rik|AW214064	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	protein-coding	4.17884958755673	4.47614289219639	4.17946237738262	4.24308446008305	4.39262854284125	4.39936209284048	4.20850082569251	4.31380228978257	0.136830912048511	0.722860793427775	0.88928524667289
Merged-chr4-139175430-4	chr4	139175311	139175511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_033543)	TTS (NR_033543)	5244.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	6.85144848111369	7.16687908189781	7.1382114310701	6.87383255099511	6.4667362322292	6.36081946297929	6.51847576410708	6.72135840177293	-0.694043940401717	0.00119379856976455	0.0155117539973113
Merged-chr7-132765053-3	chr7	132764959	132765159	+	751.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347630, intron 2 of 3)	intron (NM_001347630, intron 2 of 3)	11857.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	3.68514326108384	3.85732953282688	3.99242809522662	3.75024905989298	3.43683664839939	3.58010168447202	3.3945099338243	3.34138193612705	-1.28229062808085	0.011062134449436	0.0847751580508615
Merged-chr4-70601593-3	chr4	70601484	70601684	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66656.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	3.38650333702886	3.6191617308115	3.59923945335183	3.71963036177204	3.20831521603561	3.24371727892135	3.4834628537522	3.26457891277537	-1.03039162525243	0.052414319671247	0.238496379203458
Merged-chr7-29518652-4	chr7	29518538	29518738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-13178.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	8.73471175401616	8.71371594125131	8.85487298359559	8.83091335380553	8.33281683901504	8.43306254346813	8.83739255456064	8.48326067404752	-0.315562841107057	0.0614099672524003	0.262197832107168
Merged-chr6-5497995-3	chr6	5497918	5498118	+	596.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1740.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	2.90869538426651	2.75320303475951	2.79328588447232	3.07725632043553	2.60411801054107	2.54960541971469	2.72216007762365	2.59631413502035	-1.40288435139169	0.040482764680787	0.203285823695912
Merged-chr5-137831298-4	chr5	137831221	137831421	+	928.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153510, exon 3 of 7)	exon (NM_153510, exon 3 of 7)	4957.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	5.25769522262553	5.13720240489014	4.4759195557097	4.98831617948805	4.87530677793395	5.00805905343161	5.14641671801525	5.04330140955445	0.0390915790937254	0.91029353243145	0.966671146059764
Merged-chr17-33758146-4	chr17	33758032	33758232	+	971.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008997, intron 1 of 4)	intron (NM_008997, intron 1 of 4)	2354.0	NM_008997	19326.0	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	4.82470952284476	5.22320171278631	4.70221821014037	4.6342112598121	5.26899640783935	5.39724149628368	5.14193800966582	4.65547248964071	0.550475451021586	0.129219531808842	0.40006775601936
Merged-chr18-78021407-4	chr18	78021315	78021515	+	961.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 36 of 43)	intron (NM_001195633, intron 36 of 43)	35853.0	NM_001101038	620235.0	Mm.35607	NM_001101038	ENSMUSG00000091055	Siglec15	Cd33l3|EG620235|SIGLEC-I	sialic acid binding Ig-like lectin 15	protein-coding	4.8156990970588	5.0874415982135	5.76794900395452	5.53212874075214	5.39048255187953	5.08731289694423	5.73823576309381	5.67440627033362	0.242487982218668	0.498284520548037	0.76759838054097
Merged-chr8-11635148-4	chr8	11635050	11635250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030781)	promoter-TSS (NR_030781)	-114.0	NR_030781	102334.0	Mm.12459	NM_133971	ENSMUSG00000031508	Ankrd10	4833425P12Rik|AW549277	ankyrin repeat domain 10	protein-coding	6.28869591593719	6.33519902350107	6.80476281566999	6.30842550252265	5.67547543052386	5.81988027487138	6.23919265484403	6.04533508637392	-0.750952574582437	0.00483748887892106	0.0463848212563498
Merged-chr2-150859879-4	chr2	150859770	150859970	+	879.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	-17300.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	3.92250916031401	4.25999652137474	4.28254204787717	4.63653876925827	4.25182175778918	4.45457026093744	4.34951383791651	4.36657701332958	0.0752325728325891	0.859009472683054	0.946576014812915
Merged-chr9-119064575-4	chr9	119064510	119064710	+	845.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011700, intron 11 of 18)	intron (NM_011700, intron 11 of 18)	11832.0	NM_001164567	22351.0	Mm.83817	NM_011700	ENSMUSG00000038775	Vill	Villp	villin-like	protein-coding	3.93757552405042	3.74097031895319	3.83225958257909	3.94935369296969	3.92409911441663	4.2523100386367	4.15107032859354	4.20915339854894	0.692994968061928	0.105057244275883	0.35646246497822
Merged-chr14-19995811-3	chr14	19995725	19995925	+	750.522217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	-18576.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	3.69226723465904	3.59643411620865	3.69279586069661	3.47043424898262	3.64814114851098	3.70365337209192	3.57283857301239	3.74048091386022	0.194541159173962	0.679171257282225	0.868317902828816
Merged-chr17-29032056-3	chr17	29031976	29032176	+	964.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013663)	promoter-TSS (NM_013663)	-584.0	NM_013663	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	4.31021335241757	4.25669110919995	4.35665838567765	4.29698347778399	4.48915414255603	4.53070167040275	4.46431510742542	4.80316776061155	0.624774584896926	0.0881756353822216	0.323952387264951
Merged-chr3-90451027-3	chr3	90450955	90451155	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008727, exon 22 of 22)	3' UTR (NM_008727, exon 22 of 22)	14811.0	NM_008727	18160.0	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	3.51522151781635	3.18846934744576	3.36813052981624	3.14951644406997	2.74061390512157	3.18900453870478	3.1290038806489	3.25740524197411	-0.85959948340405	0.162895417449332	0.452408197190121
Merged-chr8-119837988-4	chr8	119837922	119838122	+	985.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	2557.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	4.87801996090137	4.87364894196133	4.58933545363333	4.24554110691435	4.83265695376003	4.49890571484544	4.44131013948785	4.58636219301537	-0.112337225796549	0.776548812392463	0.912932991254018
Merged-chr2-43727822-4	chr2	43727713	43727913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21011.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	6.25876967533389	5.76937825662854	6.1534306404005	6.05151520947353	5.81006383582659	5.46518695029434	5.96491007283847	5.54219716736412	-0.559401738778934	0.0405880083419961	0.203608160496785
Merged-chr5-36796153-4	chr5	36796063	36796263	+	992.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026242, intron 1 of 1)	CpG	591.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	5.14776016840585	5.24073249617333	5.08462429303647	4.8641102235218	5.06252784310195	5.00853554794732	4.88571072021726	5.23530258646586	-0.0451795992957655	0.887117659541198	0.957658151669542
Merged-chr11-70790033-4	chr11	70789961	70790161	+	937.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001045526)	TTS (NM_001045526)	22500.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	4.18734217979537	4.28428804147759	4.08943012011015	3.99235544738288	3.7863003172171	4.40884051156905	4.53443065866484	4.62270289457688	0.56517611908117	0.205309196557963	0.508859472252119
Merged-chr13-44869625-4	chr13	44869519	44869719	+	990.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 3 of 17)	LSU-rRNA_Hsa|rRNA|rRNA	132477.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	5.19863567115919	5.29845607057751	5.26286641956926	4.40645625665578	5.408881668319	5.27689924811219	5.03788019898594	5.98774170136062	0.712972111334218	0.0670136602841041	0.276135540428519
Merged-chr8-56076037-3	chr8	56075946	56076146	+	896.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080438, intron 5 of 9)	intron (NM_080438, intron 5 of 9)	135221.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	3.57027447537943	3.23767144053853	3.46055406321932	3.6547555862238	3.88429791212443	3.45314803250875	3.5564878837547	3.51494158894012	0.397180061802868	0.447353184260802	0.732896455509002
Merged-chr7-29007422-4	chr7	29007335	29007535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009109, intron 101 of 105)	intron (NM_009109, intron 101 of 105)	24581.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	6.28576963640063	5.98727893881525	6.21391061673396	6.74836622729515	5.79733119274731	5.68545074004716	5.81593899648429	6.13201646774255	-0.759622171889439	0.0068497813106687	0.0599410602301558
Merged-chr2-129630694-4	chr2	129630634	129630834	+	854.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291021, exon 6 of 6)	3' UTR (NM_001291021, exon 6 of 6)	35272.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	3.69124517807176	3.55681387102387	3.69175270103317	3.9324118968228	3.79679546152133	3.5126114559127	3.82354620256089	3.68970010737183	-0.0680786861537029	0.887563517657862	0.957799052224803
Merged-chr5-76906055-4	chr5	76905947	76906147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173765)	promoter-TSS (NM_173765)	-533.0	NM_173765	231326.0	Mm.39271	NM_173765	ENSMUSG00000055923	Aasdh	A230062G08Rik|A830035E16|Acsf4|U26	aminoadipate-semialdehyde dehydrogenase	protein-coding	6.12013613672109	6.48429923616429	6.222826069528	6.07519746224706	6.50296241627158	6.4554938938998	6.11081305647927	6.15844195604476	0.142844308552772	0.558044116938668	0.802963980746693
Merged-chr4-43039065-8	chr4	43038909	43039109	+	883.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	1292.0	NM_001253353	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	3.68421886264049	3.63841520826595	3.63041689593841	3.43412809509074	3.8866131506466	3.80356843808679	3.61625982995586	3.92387598484325	0.692762316956951	0.135771114835239	0.410171562448856
Merged-chr7-75686738-4	chr7	75686633	75686833	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 13 of 36)	intron (NM_029332, intron 13 of 36)	-161605.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	5.03925024844644	4.97381492604453	5.36063707854859	5.50127827240363	5.53503967594932	5.44605820262112	5.05155151150427	5.14146648942028	0.115352804954209	0.725182805756477	0.890775427374647
Merged-chr2-5895413-4	chr2	5895295	5895495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356411)	promoter-TSS (NM_001356411)	37.0	NM_021305	57743.0	Mm.21435	NM_021305	ENSMUSG00000025816	Sec61a2	-	Sec61, alpha subunit 2 (S. cerevisiae)	protein-coding	7.98763013129099	8.14950856822511	7.93301716390297	7.90381899636902	7.8875225933932	8.08893716782684	8.26278156213741	7.83882794379355	0.0420603687124579	0.812093035757447	0.927419976441895
Merged-chr2-58534571-4	chr2	58534490	58534690	+	968.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110204, intron 2 of 12)	intron (NM_001110204, intron 2 of 12)	26820.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	5.5547788576439	5.27058731210328	5.6259726403563	5.56326393198057	4.89960869013607	4.8305550623036	5.03559031446549	5.02056757490384	-1.05008252526494	0.00053995034572108	0.00821396145716622
Merged-chr15-73421512-4	chr15	73421423	73421623	+	983.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358046, intron 1 of 34)	intron (NM_001358046, intron 1 of 34)	1668.0	NM_007982	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	5.00347659888868	4.6879301695749	4.86962713992411	4.92536174236123	4.7922064716281	4.81190262107988	4.81061153880712	4.90145811970338	-0.102545528831254	0.752685551247323	0.902626829735826
Merged-chr5-62751880-1	chr5	62751780	62751980	+	557.0	f0_balb.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	14297.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	2.76526121626853	2.66782044637291	2.82251164607029	2.79372265239493	2.55895832651566	2.61146905145973	2.57011991558409	2.3583893915824	-1.25308142210972	0.074960377867179	0.295404979305057
Merged-chr11-63827629-6	chr11	63827541	63827741	+	945.4027710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94643.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	3.7304699097037	4.13426938753112	4.03093839824797	3.73087311302927	4.33943667235354	4.92401920300404	4.57072056592228	4.40217398559979	1.62347809822706	0.000137522876003487	0.00265565403989479
Merged-chr2-156839988-4	chr2	156839899	156840099	+	842.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173396)	promoter-TSS (NM_173396)	-8.0	NM_001291124	228839.0	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	4.09144762325828	4.07759101598746	4.09207570794729	3.83014256024262	4.07989687627672	4.01835326914664	3.58896115297212	4.33625971499873	0.0396891393192122	0.931488805639143	0.975308419949524
Merged-chr11-120776256-4	chr11	120776165	120776365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7939.0	NM_009053	19719.0	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	5.90014335959477	6.08306785824625	5.60956303398412	5.8244206362509	6.15313165161442	6.47738854049546	6.14534846352063	6.09405685500414	0.554243528338654	0.0270511482346802	0.156460518891458
Merged-chr5-91962379-4	chr5	91962293	91962493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028429)	promoter-TSS (NR_028429)	163.0	NR_073442	68098.0	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	6.97220866771063	7.15960077337736	7.39474084487777	7.26160019748108	6.99944692834096	7.1632560061671	7.35824178766846	7.05729266047397	-0.0836149323005903	0.675189379949053	0.866604873340231
Merged-chr5-117319190-4	chr5	117319094	117319294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033311)	promoter-TSS (NM_001033311)	-72.0	NM_001033311	231668.0	Mm.298603	NM_001033311	ENSMUSG00000066894	Vsig10	-	V-set and immunoglobulin domain containing 10	protein-coding	5.46177818053174	5.41250341204418	5.40859931383208	5.28508884079602	5.06207160176815	5.23798042039809	5.32537916631231	5.19492075583559	-0.335460445806989	0.244687455999101	0.555808536831526
Merged-chr9-118649642-4	chr9	118649537	118649737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	42928.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.73786452522229	6.49944852970638	7.39249769464984	7.47970140797979	6.32866042273888	6.11953770338681	6.89245362295972	6.22186874196292	-0.952441591731692	0.00166151040479014	0.0202369351647087
Merged-chr13-56611319-4	chr13	56611217	56611417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 1 of 16)	intron (NR_155548, intron 1 of 16)	1731.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	5.15468158511413	4.98350049225635	5.25259884975172	5.27250530722959	5.20108759903357	5.57187110466348	5.57509170819379	5.21746928644423	0.39673247448112	0.189551470351955	0.488507335826128
Merged-chr3-132087255-4	chr3	132087181	132087381	+	939.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	1989.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	5.07343442805152	4.69744181789282	5.07433760987343	4.65206462524974	3.80846355075874	4.57121205289348	4.16929902264716	4.60588274935771	-1.26022680541361	0.0038535401119007	0.0389231065169547
Merged-chr18-34373343-8	chr18	34373363	34373563	+	937.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007874)	promoter-TSS (NM_007874)	-48.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	5.62584381656734	5.38721318941498	5.60124234914781	5.36559937625186	5.65353921828809	5.72253353162215	5.43764403152697	5.57120097456989	0.197353538731595	0.467591569808454	0.747026558181345
Merged-chr12-108808209-4	chr12	108808096	108808296	+	868.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009537, intron 2 of 4)	intron (NM_009537, intron 2 of 4)	14885.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	3.7371080020977	4.09103813890476	3.44184597709018	3.64263750102	4.00075278473424	3.90969031194219	3.66915437149762	3.73552422897431	0.262129572090739	0.59357365880412	0.822876522679178
Merged-chr8-36093743-3	chr8	36093625	36093825	+	892.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1103.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	3.59944551381666	3.82353982392985	3.90401808925494	3.97543808513421	3.65578372832396	3.59525537407433	3.58656992454346	3.75884210862846	-0.578843963714294	0.21995387303858	0.527609241046694
Merged-chr3-88522260-4	chr3	88522158	88522358	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10137.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	4.30008687875923	4.24074381707765	3.8784628094824	4.27379622015707	4.43932044702193	4.4292901408282	4.48754086705345	4.71690344668865	0.771936763823488	0.05019709694187	0.232343553337584
Merged-chr16-78576745-4	chr16	78576643	78576843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252440)	promoter-TSS (NM_001252440)	-55.0	NM_025967	67102.0	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	8.3373886616094	8.21038712399934	8.32186537597788	8.53948657603837	8.61170849883686	8.61329640933745	8.99478929160883	8.34993142915696	0.379477309457902	0.041873068739002	0.207309115933326
Merged-chr18-60982188-4	chr18	60982107	60982307	+	896.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177407, intron 16 of 17)	intron (NM_177407, intron 16 of 17)	18653.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	4.00348936684407	4.26476397258892	4.2341951979773	3.92400962521236	4.19622663868244	3.90586581591152	4.17260401007033	4.09866146728362	-0.00335849627821876	0.993653044388381	0.997702270136287
Merged-chr14-67715864-4	chr14	67715742	67715942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110162)	promoter-TSS (NM_001110162)	-1.0	NM_175384	108912.0	Mm.33831	NM_175384	ENSMUSG00000048922	Cdca2	2610311M19Rik|AI586158	cell division cycle associated 2	protein-coding	9.61565149596896	9.675747224833	9.79242094500711	9.78784506040376	9.70577862456694	10.0016191455803	9.92149197282678	9.61615051722621	0.119960864628059	0.425351156819438	0.716881822064518
Merged-chr19-6084986-4	chr19	6084868	6085068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026410)	promoter-TSS (NM_026410)	7.0	NM_001356994	81909.0	Mm.289471	NM_024231	ENSMUSG00000024792	Zfpl1	-	zinc finger like protein 1	protein-coding	6.61930536439439	6.93370092331756	6.41075946145406	6.45806155811412	6.93889310899744	7.22787511046404	6.67934057417656	6.8894976767943	0.463499876653395	0.0454921966464749	0.21849453880563
Merged-chr8-105991021-4	chr8	105990935	105991135	+	838.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176913, intron 1 of 11)	intron (NM_176913, intron 1 of 11)	738.0	NM_001301204	319446.0	Mm.248357	NM_176913	ENSMUSG00000053687	Dpep2	F630103D06Rik|MBD-2	dipeptidase 2	protein-coding	4.01958058167618	4.04309492904626	4.21722618141569	3.96353875057574	4.21589506310454	4.29824094953615	4.10458144503926	4.81926208859182	0.810735352965531	0.0559774445536326	0.247627936288421
Merged-chr2-129593941-5	chr2	129593800	129594000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291022, intron 1 of 4)	intron (NM_001291022, intron 1 of 4)	731.0	NM_001291022	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	5.56158700831154	6.1006461450203	5.8725785964184	5.56553942570118	5.98512101763733	6.04719806202032	5.81965323367507	5.79774787224828	0.212058944627937	0.43422757661628	0.723549984221041
Merged-chr5-121842119-4	chr5	121842018	121842218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5259.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	6.30926915414121	6.09439527968789	6.51439795668353	6.94343359205196	6.37243876198041	5.76946858303074	5.79183238195285	6.60041082882551	-0.485704192147773	0.120972621606774	0.385163676211649
Merged-chr3-85592892-4	chr3	85592793	85592993	+	720.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144896, intron 2 of 12)	intron (NM_144896, intron 2 of 12)	18764.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	3.4001660850589	3.5277056073079	3.40057923171462	3.55621221070521	3.8201763848174	3.4518594799228	3.70210344351762	3.45750128896027	0.469705731146373	0.347655126999444	0.655546119710951
Merged-chr10-78130195-1	chr10	78130095	78130295	+	557.0	f0_c57.idr	Intergenic	Intergenic	39573.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	3.10046057930772	3.60435653874328	3.34805117777542	2.94600561632321	3.40167446563442	3.46320248418088	3.27799801203914	3.34620316690869	0.372560791530385	0.516257027619158	0.778036395699852
Merged-chr14-61860866-4	chr14	61860761	61860961	+	854.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-178488.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	3.71121734731309	4.26366156516089	4.25001335405291	3.70835227762042	3.94626647203361	4.10833765929604	3.75636773513925	4.20666486113633	0.0220414640966902	0.963124230081492	0.986827734965212
Merged-chr6-97407552-3	chr6	97407439	97407639	+	870.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	51747.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.67444693900082	3.48732275702926	4.0690636868569	3.65235753161685	3.48551526507349	3.50436374959717	3.31272987142085	3.72314198423795	-0.696885881514657	0.180411471198506	0.476794568315393
Merged-chr9-118617486-4	chr9	118617407	118617607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	RLTR11C_MM|LTR|ERVK	10798.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.8912952576701	8.07551562786919	8.07798135560827	7.97666394190616	8.15469622252003	8.01726775256455	8.11960080046332	7.84974799346557	0.0482323295264912	0.769482037240925	0.909742530773464
Merged-chr10-68280099-4	chr10	68279957	68280157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1331.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	5.11584532113208	5.70927115562723	5.31277842882277	5.36469298893532	5.27240734901058	5.1852802689447	5.4284307951045	5.33900702971814	-0.158624807481086	0.597889550469014	0.825632463572035
Merged-chr2-164677214-2	chr2	164677109	164677309	+	653.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-3122.0	NM_001161806	629761.0	Mm.389336	NM_001161806	ENSMUSG00000078940	Wfdc11	-	WAP four-disulfide core domain 11	protein-coding	3.03401935564254	3.00552767531669	3.03433889591734	3.43524281208333	3.33424024832997	3.27204009028955	3.15035080251423	3.47914336611273	0.576445089811315	0.332002818830006	0.643072511197915
Merged-chr2-57114971-4	chr2	57114879	57115079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013613)	promoter-TSS (NM_013613)	59.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	5.66119246471337	6.08953717855206	6.07591155254377	6.31495788000448	6.13382645428894	5.9710679085099	6.6933037465818	6.19263882237141	0.323218841426499	0.255313208141567	0.566865111326869
Merged-chr14-51094610-2	chr14	51094416	51094616	+	791.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021472, intron 1 of 1)	B1_Mur3|SINE|Alu	-1484.0	NM_007447	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	2.26097165245635	2.50891780063252	2.47941498096582	2.00532240709852	2.51141185740768	2.58708178080445	2.53518155946344	2.66543515477272	1.39583878197898	0.0839453578573989	0.315061778377632
Merged-chr10-8323386-3	chr10	8323289	8323489	+	791.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 3 of 7)	intron (NM_177387, intron 3 of 7)	195436.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	3.68815061666952	3.58802651223573	3.47851288464684	3.59242343721061	3.7004185215804	3.59262356008048	3.40841190921635	3.47672914566788	-0.107095371738287	0.82662184485214	0.933493833011748
Merged-chr10-84424059-3	chr10	84423949	84424149	+	960.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 1 of 6)	intron (NM_001004363, intron 1 of 6)	16422.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	4.08954665686115	3.88427594168049	4.50393273413043	4.64289488338031	3.87465433218489	3.88068661829885	4.25261604010188	4.13560450097516	-0.716822621240196	0.124154700202129	0.390992275271539
Merged-chr6-31176551-4	chr6	31176447	31176647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	41927.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	5.59627194089935	5.75004136572585	5.39807341737612	5.57437131526212	5.75082884994945	5.44713732106984	5.4880846186664	5.7651891000136	0.0693200582924792	0.799312985615993	0.922485593889919
Merged-chr7-142098014-4	chr7	142097919	142098119	+	928.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2735.0	NM_008748	18218.0	Mm.39725	NM_008748	ENSMUSG00000037887	Dusp8	5530400B01Rik|AI593498|Nttp1	dual specificity phosphatase 8	protein-coding	4.6837352181467	4.61249347125548	4.38702879839046	4.80468272646232	4.69274718114081	4.65445647324828	4.86967908108777	4.47643669733585	0.07950627950824	0.8255361854666	0.933108872014231
Merged-chr5-110424365-4	chr5	110424252	110424452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142642, intron 2 of 18)	intron (NM_001142642, intron 2 of 18)	24151.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	6.8344910461488	6.92705602093131	6.95724844413117	6.96389100931629	6.9327444045725	7.10787269640278	7.2074009599668	6.91312821196118	0.161800924393646	0.401290884079796	0.698903419166503
Merged-chr4-59003175-4	chr4	59003085	59003285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033165)	promoter-TSS (NM_001033165)	-8.0	NM_001033165	72429.0	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	7.11402271015721	7.13603379011728	7.06742323156399	7.29206102944592	7.14420478434272	7.18190860592668	7.24362872533329	6.98731744103406	-0.0306615237312765	0.869930464635058	0.951164063629167
Merged-chr13-66906106-4	chr13	66906015	66906215	+	987.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026219)	promoter-TSS (NM_026219)	700.0	NM_001177750	100038538.0	Mm.405005	NM_001177750	ENSMUSG00000074826	Gm10767	-	predicted gene 10767	protein-coding	4.98463335624364	5.47767598839356	5.35946017507101	5.52926575913745	6.3485599021139	5.82638092611302	5.97921345395718	5.77015397054494	1.06024849381098	0.000402901112412327	0.00647942484236837
Merged-chr2-163054532-4	chr2	163054428	163054628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008652)	promoter-TSS (NM_008652)	-107.0	NM_008652	17865.0	Mm.4594	NM_008652	ENSMUSG00000017861	Mybl2	B-Myb|Bmyb	myeloblastosis oncogene-like 2	protein-coding	8.45402457917557	8.2373037535917	8.35221385248918	8.37924009126011	8.27310984089348	8.2471758284738	8.53817928375072	8.16797777675127	-0.055098008536886	0.73508224211729	0.895431262597044
Merged-chr13-17944270-4	chr13	17944172	17944372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019491)	promoter-TSS (NM_019491)	-55.0	NM_019491	56044.0	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	6.94148791861823	6.94915350131974	7.11917341825133	7.31740248772719	7.22263984535266	7.17211415263079	7.57215546488863	7.32083635343882	0.309300780246888	0.131542180549466	0.403857870485267
Merged-chr2-12002483-3	chr2	12002382	12002582	+	724.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	224729.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	3.08171532609827	3.17532612321476	3.19681831150206	3.1401208531726	3.23051849236172	3.06275701179643	3.07136170753364	2.95521459611555	-0.233765113890008	0.679313376361894	0.868374821595188
Merged-chr10-94337764-1	chr10	94337664	94337864	+	843.6666869999999	f0_balb.idr	intron (NM_001359762, intron 1 of 4)	polypurine|Low_complexity|Low_complexity	25815.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	4.10274704567795	4.0457393293486	4.05890056607531	3.91645729208149	3.7042511818304	3.93040713311812	3.99540998352675	3.96261188203361	-0.360832953631155	0.405581249965953	0.702341680428793
Merged-chr12-83812104-2	chr12	83812004	83812204	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001272055, intron 2 of 8)	B3|SINE|B2	30254.0	NM_001272055	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	2.86983589875265	2.77379522413374	2.93126127026159	2.5015258769142	3.00949214374605	2.91518944215653	2.66063667370936	3.09688662898664	0.721555731873506	0.272535921465012	0.58395046219019
Merged-chr16-8433715-2	chr16	8433616	8433816	+	886.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D5|LTR|ERVK	-8580.0	NM_029070	74720.0	Mm.159318	NM_029070	ENSMUSG00000022715	Tmem114	4930511J11Rik|Cldn26	transmembrane protein 114	protein-coding	3.49948824641294	3.75199673595673	3.60796965927606	3.11594717578002	3.35833558989266	3.61745478040833	3.59276325414793	3.60584328718999	0.123252264238546	0.818884197717662	0.930602521144194
Merged-chr10-41303831-4	chr10	41303727	41303927	+	978.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133999)	promoter-TSS (NM_133999)	-586.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	4.7371766855749	4.76756535913401	5.08588483484375	4.76166973647584	4.84528849894927	4.87279023534268	4.99932878238711	5.02040529139272	0.193961007809862	0.551748325969969	0.799073691139046
Merged-chr11-76088663-4	chr11	76088559	76088759	+	838.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026664, intron 13 of 21)	intron (NM_026664, intron 13 of 21)	-60877.0	NM_029658	76566.0	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	4.17686000222936	4.58024957700385	4.46271241928698	3.81412408589913	4.10971204512372	3.80708141374998	4.24613317257374	3.97831359670892	-0.600605987753406	0.201788676592858	0.504230998642117
Merged-chr1-177179850-3	chr1	177179757	177179957	+	695.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	68910.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	3.25831659943565	3.25404737100538	3.37637670445169	3.03647314967159	3.45533013333556	3.43347941608638	3.30635041736719	3.67344381966038	0.887867858095928	0.0929155440769371	0.333552636168877
Merged-chr8-57433024-4	chr8	57432917	57433117	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22906.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	5.07566179713442	5.04829213763652	5.34888268119881	5.36585164372291	4.66325637667593	4.91110856869053	5.34862972716447	5.17041348113406	-0.347989039501775	0.304715668845924	0.617262126267403
Merged-chr5-86065546-5	chr5	86065373	86065573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007683, exon 1 of 19)	5' UTR (NM_007683, exon 1 of 19)	110.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	6.75139451014975	6.85918594565894	7.33892912726187	6.86659237651302	7.26843733605747	7.54416204591415	7.19051137692264	7.0132500846758	0.407572079420418	0.0674763629705475	0.277209483468326
Merged-chr13-67484225-4	chr13	67484140	67484340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001076791)	promoter-TSS (NM_001076791)	13.0	NM_001076791	408067.0	Mm.315879	NM_001076791	ENSMUSG00000059839	Zfp874b	9630025I21Rik|Rslcan16	zinc finger protein 874b	protein-coding	6.2336043346879	6.16515966524516	6.4883232434074	6.51444183836704	6.30797707770556	6.54384340595703	6.56449298337691	6.4836859999618	0.152278627068873	0.502457013501531	0.769717422982556
Merged-chr10-78018992-3	chr10	78018882	78019082	+	918.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9175.0	NM_001358793	18641.0	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver, B-type	protein-coding	3.71213529600955	3.7491633245616	4.03715524709503	3.94097919100461	3.53778747694345	3.660080329288	3.58901438414917	3.7105691258878	-0.758923118658425	0.106833796224728	0.360428608469045
Merged-chr7-16047882-2	chr7	16047792	16047992	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	CpG	-23953.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	4.93759632563283	5.26751430584144	5.52333913127343	4.80884790639707	5.16482594664467	4.95785851927885	5.08810310252807	5.23414171022599	-0.063233329171661	0.852918244820937	0.944672349828292
Merged-chr2-6378939-4	chr2	6378841	6379041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181399, intron 1 of 13)	intron (NM_181399, intron 1 of 13)	26205.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	6.67825347957946	6.40639704291649	6.7950486025503	7.11159355329832	6.67617574511203	6.4091646979695	6.84035036279348	6.74812670084687	-0.153468296393638	0.526859816153419	0.783989523225827
Merged-chr10-117906637-4	chr10	117906466	117906666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18893.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	5.68891849730411	5.97256068140029	6.28803333730963	5.68496180250385	5.89039070321393	5.86790562186929	5.99334541056162	6.21371277226497	0.120479401610323	0.658182625931755	0.857706321445165
Merged-chr6-128133861-3	chr6	128133729	128133929	+	955.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	9749.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	4.00986449597433	3.7615237304663	4.39988926655707	4.1120099249731	3.6886148504635	3.76260987390736	3.6882825205147	3.7003818658276	-1.09278523663865	0.0203943045962292	0.129701598731965
Merged-chr4-149143772-3	chr4	149143683	149143883	+	852.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6183.0	NM_027263	69928.0	Mm.260893	NM_027263	ENSMUSG00000073705	Cenps	2610040C18Rik|2810407L01Rik|Apitd1|CENP-S	centromere protein S	protein-coding	4.49139071619009	4.38280120097217	4.10207353272764	4.49292894503545	3.76194906383063	3.78690842928756	3.83414285682963	3.95288498360665	-1.53956489203256	0.000462752233729445	0.00724235735370012
Merged-chr7-43798076-3	chr7	43797962	43798162	+	944.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008940, exon 1 of 5)	5' UTR (NM_008940, exon 1 of 5)	485.0	NM_008940	259277.0	Mm.458023	NM_008940	ENSMUSG00000064023	Klk8	BSP1|NP|Nrpn|Prss19	kallikrein related-peptidase 8	protein-coding	3.94550270213233	4.19333744734062	3.71769124054762	4.29769221765066	4.0034086293622	4.01437664081507	4.3648891946571	4.18232501111551	0.188709820622604	0.676032499768078	0.867014726144001
Merged-chr11-22672108-3	chr11	22671967	22672167	+	676.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	159784.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	2.85556308737232	3.56806316191079	2.99764373338426	3.2195876940298	3.0912339829921	3.23705717965223	3.28408873476808	3.12443772097596	-0.0283127630528514	0.96322894036864	0.98685387184598
Merged-chr4-151933632-4	chr4	151933511	151933711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172704)	promoter-TSS (NM_172704)	-109.0	NM_172704	230935.0	Mm.21353	NM_172704	ENSMUSG00000039768	Dnajc11	E030019A03Rik	DnaJ heat shock protein family (Hsp40) member C11	protein-coding	7.62157873009612	7.72946526034361	7.77206912851564	7.48257095733212	8.01070595386615	7.94943499353515	7.74978722036856	7.83517692971561	0.32008246826893	0.0648249974584329	0.270769232679643
Merged-chr10-88740049-3	chr10	88739957	88740157	+	682.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025859, intron 4 of 5)	ORR1D2|LTR|ERVL-MaLR	8643.0	NM_025859	104303.0	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	3.75498314295281	3.79060677088919	3.70118656353224	3.77866927043861	3.57437817715767	3.76336103096311	3.8413182067608	4.23404717847669	0.325214163157883	0.492683414054124	0.763658218913778
Merged-chr5-9069066-4	chr5	9068979	9069179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31658.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	6.54234212399705	5.89297703508359	6.54350231101701	6.52463798756855	5.96205779141753	5.92613575772457	5.84769336895622	6.10183443831944	-0.678794785292094	0.00931881758168255	0.0750523655443597
Merged-chr4-125089979-3	chr4	125089889	125090089	+	670.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151472, intron 3 of 7)	intron (NR_151472, intron 3 of 7)	4855.0	NR_151472	70088.0	Mm.291214	NM_027310	ENSMUSG00000028863	Meaf6	2310005N01Rik|2810036M01Rik	MYST/Esa1-associated factor 6	protein-coding	3.70974799127726	3.4771902755446	3.71027573374166	3.86478343443235	3.71679046697003	3.33842961222534	3.74396760858286	3.75763707063662	-0.158579945039233	0.750771686908949	0.901855648088396
Merged-chr14-70578517-3	chr14	70578419	70578619	+	988.3333130000001	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001360474, intron 1 of 2)	intron (NM_001360474, intron 1 of 2)	420.0	NM_001360474	213484.0	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	4.50586119675907	4.3116772658548	3.99849520362982	4.74419164811968	4.47627179690701	4.28376140775989	4.0900923255543	4.34135802948219	-0.29309607021529	0.495272462815492	0.765570679090165
Merged-chr10-120197763-4	chr10	120197665	120197865	+	779.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 1 of 11)	intron (NM_001359184, intron 1 of 11)	3832.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	3.97062464936996	4.23490472862589	4.21948147138855	3.99558269380007	4.3046283761784	4.29965332773894	4.51545811914338	4.17092559200217	0.559154322504739	0.160457513565427	0.448621443584546
Merged-chr2-75775399-4	chr2	75775293	75775493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56784.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	6.6074145757651	6.32443205176018	6.41147546945237	6.7585473091207	6.39749682616166	6.0989160859311	6.67646294868652	6.6338775133105	-0.110196151757935	0.650701373627571	0.85342582730071
Merged-chr10-34112477-3	chr10	34112371	34112571	+	730.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	15501.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	3.27621294793504	3.26198180562882	3.4888373564335	3.67416903734117	3.14273457733255	3.13129495163888	3.14534764371503	3.2160050617141	-1.08716804753618	0.0535449483687156	0.241541027944534
Merged-chr10-63308790-3	chr10	63308692	63308892	+	886.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359484, intron 17 of 22)	intron (NM_001359484, intron 17 of 22)	30243.0	NM_019812	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	4.01361743649969	3.83907946457821	3.38108156199825	3.31733372812517	3.56949481571051	3.68925554140129	3.81848870353791	3.96929661299493	0.307246225616143	0.56107336642944	0.804849597634179
Merged-chr10-60753358-2	chr10	60753258	60753458	+	899.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023596)	promoter-TSS (NM_023596)	-576.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	3.50770386309717	3.71659025736133	3.92037486459225	3.54192984305316	3.53698542151114	3.68482900669733	3.76469218585208	3.87314057207794	0.127781491725024	0.790854603819296	0.918885370783943
Merged-chr3-97227728-4	chr3	97227612	97227812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029933)	promoter-TSS (NM_029933)	-348.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	7.67651306745256	7.53122923625195	7.60921926331341	7.68348662538658	7.62244642182399	7.9513725009452	7.8254882578251	7.80685066524509	0.225077148347445	0.188483192533522	0.487058433163965
Merged-chr6-55416178-3	chr6	55416102	55416302	+	828.688904	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	19315.0	NR_046179	330324.0	Mm.113703	NR_046179	ENSMUSG00000108228	6430584L05Rik	6430584L05	RIKEN cDNA 6430584L05 gene	ncRNA	3.35849096702701	3.46280457024346	3.56858833631035	3.92487688865429	2.72729387982512	2.99858640787669	3.45322619985859	3.10797510918396	-1.9190952633841	0.0054618951921393	0.0506873843391504
Merged-chr1-120532712-4	chr1	120532594	120532794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27670.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	5.7943366922604	6.48654431402647	6.50343176237996	6.10252371050934	6.69554770219662	6.80405357626063	6.72137408898663	6.54714916524117	0.652354744805677	0.00812645133676154	0.0679310252142512
Merged-chr2-158502488-1	chr2	158502388	158502588	+	739.0	f1_balb.idr	promoter-TSS (NM_145635)	promoter-TSS (NM_145635)	-124.0	NM_145635	246747.0	Mm.28800	NM_145635	ENSMUSG00000044405	Adig	SMAF-1|Smaf1	adipogenin	protein-coding	2.85212040364393	2.64028747292615	2.85252976846087	2.49490114887509	2.4573093338507	2.70815107850071	2.65979691507023	2.73164640254504	-0.357338761199749	0.60052338424109	0.826836656557895
Merged-chr5-64834436-4	chr5	64834336	64834536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30913.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	7.85705394952248	7.97371378430139	7.67648780930395	7.39993773437398	7.67238917816241	7.74308805835186	7.30518922799276	6.96808652785447	-0.367078293269952	0.117978738069936	0.380000782986911
Merged-chr6-17734254-4	chr6	17734149	17734349	+	939.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289624, intron 1 of 15)	RMER1C|Other|Other	-9343.0	NM_001289627	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	5.10633059610153	4.66154090321135	5.27481612246089	4.77937828055161	4.70225989165331	4.86161564060019	4.81854703512486	4.72273014191602	-0.38656444045161	0.271983943905549	0.583575846845515
Merged-chr7-81235299-3	chr7	81235202	81235402	+	924.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 1 of 21)	intron (NM_008803, intron 1 of 21)	21498.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	3.89990833461128	3.52442111989676	3.761583490563	3.71273928060684	3.76852321286139	3.77771066745819	3.59155238631757	3.29436770830456	-0.31373852118016	0.533538475731744	0.788779803917926
Merged-chr10-121488292-3	chr10	121488226	121488426	+	858.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-12076.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	3.67096153167459	3.69927044388274	3.76948538195327	3.47075892959381	3.70661951709691	3.29587446742016	3.49573412175641	3.76718467535006	-0.201876815827222	0.690591284709158	0.874032664550376
Merged-chr17-35122103-4	chr17	35121977	35122177	+	818.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303476)	promoter-TSS (NM_001303476)	-24.0	NM_001303446	13001.0	Mm.378901	NM_009975	ENSMUSG00000024387	Csnk2b	CK II beta	casein kinase 2, beta polypeptide	protein-coding	3.78889111615673	3.92692478654157	3.73683750948797	3.4571283565487	3.76285400227186	3.74439384746621	3.5521367137011	4.25527586527164	0.3596117074508	0.472796218079349	0.75083469816983
Merged-chr16-75900380-3	chr16	75900280	75900480	+	555.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 1 of 7)	intron (NM_023380, intron 1 of 7)	8886.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	3.34331122708542	3.27197318241298	3.28704341541655	3.18038782408871	3.34036791887956	3.14133329860003	3.43574827019126	3.4481734889338	0.300689461850736	0.567208005337037	0.808159943760313
Merged-chr13-49324469-4	chr13	49324362	49324562	+	977.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15254.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	4.7649563824507	5.01388919895442	5.11397136056144	5.10959548709296	4.86988609450132	4.72879097682025	4.96177023762626	4.94840402077236	-0.268627889560245	0.406291032455429	0.702813973926921
Merged-chr3-154428527-2	chr3	154428423	154428623	+	763.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	97702.0	NR_040387	99686.0	Mm.38082	NR_040387	ENSMUSG00000093738	AI606473	-	expressed sequence AI606473	ncRNA	3.90740561725336	4.04169499549173	4.1692628991054	3.87765303717085	4.34400150298594	4.29686687351995	4.76863669635745	4.25809918265298	1.08418287959982	0.00809909590634904	0.0678058747962854
Merged-chr9-119895447-4	chr9	119895332	119895532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026236, intron 1 of 18)	CpG	537.0	NM_026236	67561.0	Mm.104789	NM_026236	ENSMUSG00000032512	Wdr48	8430408H12Rik|Uaf1|mKIAA1449	WD repeat domain 48	protein-coding	4.67300588488755	5.65647602110543	5.0536332219708	5.08288256179159	5.87167542377762	5.63330349266108	5.29195609666618	5.05021039467252	0.60015781950173	0.11057434735802	0.367251713433649
Merged-chr10-19957985-4	chr10	19957889	19958089	+	925.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	MLT1A0|LTR|ERVL-MaLR	23463.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	4.43946491858271	5.61056340143126	4.52690298265177	4.22598691931182	4.52683427165104	4.48120964702699	4.06638215152763	4.19247851072928	-1.07509830410433	0.0318648847829256	0.174238311637134
Merged-chr18-75506139-2	chr18	75506037	75506237	+	715.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-8508.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	3.40596176936356	3.12708901323188	3.60553948461807	3.04022180720164	3.37645002467585	3.2833978593159	3.28147274904155	3.40449421362237	0.129506417460968	0.81701286833877	0.929622615879435
Merged-chr6-42433755-4	chr6	42433660	42433860	+	922.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207028)	promoter-TSS (NM_207028)	-775.0	NM_207028	387353.0	Mm.377914	NM_207028	ENSMUSG00000048284	Tas2r126	T2R12|T2R26|Tas2r26|Tas2r41|mGR26|mt2r35	taste receptor, type 2, member 126	protein-coding	4.03745661959359	4.37562370946869	4.18526316460652	4.376586759426	4.43127014351967	4.10780728134012	4.25578327993915	4.08661609935898	-0.0596461867426892	0.884197003000984	0.956419951319176
Merged-chr7-144553281-2	chr7	144553181	144553381	+	777.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195086, intron 1 of 31)	intron (NM_001195086, intron 1 of 31)	448.0	NM_001033319	233977.0	Mm.490347	NM_001033319	ENSMUSG00000037519	Ppfia1	C030014K08Rik|C87158|LIP.1|LIP1	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1	protein-coding	3.1879832411385	3.18640248570068	3.24735166244038	3.20933378584885	3.30311747303728	3.2989473679205	3.2909815702081	3.30198315106143	0.339192770562964	0.514973288398523	0.777338373814592
Merged-chr5-5368931-4	chr5	5368808	5369008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	11343.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	4.99360172530726	4.8316649154729	5.15266044073015	4.89494832741456	5.07372999457413	4.910124749535	4.93639424722355	4.84868406945978	-0.0253356341790046	0.93675275382367	0.977098357477254
Merged-chr1-55215630-4	chr1	55215535	55215735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028713, intron 1 of 8)	intron (NM_028713, intron 1 of 8)	11147.0	NM_001356288	74013.0	Mm.292050	NM_028713	ENSMUSG00000025978	Rftn2	2700010E02Rik|3222401M22Rik	raftlin family member 2	protein-coding	6.18660899341496	6.1986547355196	6.58805756805508	6.60012047489932	6.29530816493864	6.63325598002064	6.94990086926342	6.70217608854461	0.351317066739982	0.161919391213911	0.450986986551208
Merged-chr17-12039412-4	chr17	12039298	12039498	+	978.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016694, intron 10 of 11)	intron (NM_016694, intron 10 of 11)	-79886.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	5.27699381630957	5.72114842548571	4.99313807788643	5.81878084455984	5.15305630512038	5.73612535050517	5.55997243361286	4.94955149023528	-0.219632668025245	0.543344386999619	0.794435522826628
Merged-chr16-32164589-4	chr16	32164530	32164730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146069, intron 1 of 3)	intron (NM_146069, intron 1 of 3)	964.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	4.85652004062314	5.46942285319686	5.04874970371631	4.97372931626875	5.05489764247998	5.32624376410515	5.46680483506761	5.41349884990086	0.388706785113933	0.231744077904602	0.541273042204025
Merged-chr19-55491483-3	chr19	55491395	55491595	+	874.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 6 of 8)	intron (NM_001360431, intron 6 of 8)	175438.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	2.56651970760604	2.42662261975377	2.48192914960618	2.14788184598843	3.2967402214713	3.1121261487005	3.4354373388343	3.21617774961785	6.1577698555818	2.05070225159384e-11	1.76075917450178e-09
Merged-chr9-61511532-3	chr9	61511424	61511624	+	764.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	139158.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	3.38486879785301	3.11175343001111	3.27466746984614	3.41680858538896	3.17445852419205	3.1982130667364	3.37168481441238	3.38343100545561	-0.0930011531844764	0.863326995314536	0.948590620866332
Merged-chr14-20695172-7	chr14	20695081	20695281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001168273)	TTS (NM_001168273)	213.0	NM_028428	73068.0	Mm.277552	NM_028428	ENSMUSG00000039357	Fut11	3110009G03Rik|AI317183	fucosyltransferase 11	protein-coding	5.62724944559479	5.34073142241455	5.62823634444564	5.47082298924122	5.18985310054209	5.3647898931774	5.52326112999257	5.78715197349086	-0.068051346105898	0.817110899835301	0.929670829100828
Merged-chr10-37156474-4	chr10	37156376	37156576	+	872.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17550.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	3.93697066864906	3.74455058516483	4.03456725982832	3.81967409413256	4.29078081234905	4.15734803543113	4.06251291373329	3.93526481312839	0.665189618460716	0.118073985985231	0.380134255210221
Merged-chr16-57495894-4	chr16	57495781	57495981	+	897.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-53361.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	3.64740723679714	3.99283963079244	3.47080316539357	3.98306332678678	3.49507898554782	3.76591807661947	3.51984103492681	3.94030085983365	-0.337515243442556	0.509581007047939	0.774121577220472
Merged-chr16-28911703-4	chr16	28911682	28911882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177718, intron 1 of 1)	intron (NM_177718, intron 1 of 1)	17916.0	NM_177718	239796.0	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	4.97629123093899	5.18743160345749	5.64617084424086	5.00471040591408	5.59484426712956	5.7702073361091	5.26763363228208	5.49181748619034	0.573540307816184	0.0721106700084107	0.288519695364175
Merged-chr19-56400406-4	chr19	56400321	56400521	+	865.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007611, intron 1 of 6)	ORR1F|LTR|ERVL-MaLR	3292.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	4.25514890613434	4.24179264537615	4.25579039757612	4.33586315280208	4.09350198766843	4.38356641729765	4.63124531569593	4.58070967517965	0.363331656711358	0.358682641282382	0.664653538577493
Merged-chr14-105297497-3	chr14	105297421	105297621	+	872.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029561, intron 4 of 7)	intron (NM_029561, intron 4 of 7)	38848.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	3.67161094417043	3.67161712167682	3.52710586629468	3.72573478446561	3.18473588749423	3.21839323188892	3.16602356673527	3.10601888832944	-1.81697718325729	0.0010732204621899	0.014225467277135
Merged-chr12-35535069-4	chr12	35534970	35535170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013464)	promoter-TSS (NM_013464)	-81.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	6.81346179254508	6.64311047256207	6.5723167700559	6.85617257344396	6.77282278360386	6.79833065067164	6.93466347988577	6.78198155854729	0.121748220938474	0.547078762676968	0.796688065153728
Merged-chr6-29217508-2	chr6	29217408	29217608	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1144.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	3.57712942597462	3.49521033647053	3.51969264484807	3.49498602433555	3.39237645064227	3.63869889151519	3.6181689020525	4.29206691495432	0.784239007631975	0.136925947539749	0.411508257743677
Merged-chr7-28014132-3	chr7	28014039	28014239	+	909.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001254951)	promoter-TSS (NM_001254951)	-24.0	NM_001254951	100043772.0	Mm.129275	NM_001100456	ENSMUSG00000096916	Zfp850	C130069I09Rik|Gm4636	zinc finger protein 850	protein-coding	3.59318422189874	3.60313220692744	3.79984425231866	3.52800968633802	3.37555887754481	3.65416638006615	3.63356995814032	4.01504496001857	0.171490993034956	0.732436755791619	0.893963778565797
Merged-chr17-73942733-4	chr17	73942631	73942831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 2 of 35)	intron (NM_011723, intron 2 of 35)	7465.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	5.44840053501015	5.45658825950097	5.53119066536143	5.82692341987575	5.38724626258816	5.11885839820726	5.44977963719701	5.35811209384905	-0.445377893656466	0.12610816511827	0.394577919247147
Merged-chr17-33930995-7	chr17	33930909	33931109	+	997.985718	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009059, intron 2 of 17)	intron (NM_009059, intron 2 of 17)	1115.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	5.07595253453317	5.11872148286515	4.97280205279205	4.36328832860392	5.43734887026787	5.56954498377556	4.7560589771158	5.10615002897884	0.666227962591702	0.081660838691228	0.31011552155359
Merged-chr11-70803047-4	chr11	70802939	70803139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 1 of 4)	MLT1D|LTR|ERVL-MaLR	9522.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	6.40600602474963	6.10300692516031	5.92504488753856	6.07264185052526	6.23302445722998	6.32471481665986	6.47012133633226	6.28003070320284	0.294090889561967	0.210361255531725	0.514845384376768
Merged-chr2-120309413-4	chr2	120309299	120309499	+	954.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024145, intron 7 of 19)	intron (NM_001024145, intron 7 of 19)	4766.0	NM_001024145	271844.0	Mm.24880	NM_001024145	ENSMUSG00000046971	Pla2g4f	4732472I07Rik|Gm647|Pla2zeta	phospholipase A2, group IVF	protein-coding	4.93348874393958	4.5839590064684	4.45916310686236	5.00641624904973	4.64093521033818	4.54228588457927	5.00481381657612	5.05649317624333	0.0995249035712815	0.791694145394015	0.919252187122779
Merged-chr9-59353415-4	chr9	59353300	59353500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153195, intron 1 of 15)	CpG	108.0	NM_001359558	102774.0	Mm.200714	NM_175325	ENSMUSG00000025235	Bbs4	AW537059|AW742241|D9Ertd464e	Bardet-Biedl syndrome 4 (human)	protein-coding	7.21640852140794	7.34151315379821	7.00926426581083	6.96652706439135	7.23248409700705	7.05391993118481	7.03509841382397	6.72334799208909	-0.145860241133102	0.491733160627725	0.763180775961788
Merged-chr2-144215468-4	chr2	144215365	144215565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26175.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	6.97773384454435	7.22027104133204	6.70007126983316	6.90454123421521	6.80146495048778	6.95283504724372	6.91852006314265	6.92300977577675	-0.0959708208478777	0.641369559253394	0.848684971999741
Merged-chr7-116231405-3	chr7	116231305	116231505	+	950.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305185, intron 3 of 26)	intron (NM_001305185, intron 3 of 26)	6371.0	NM_001305186	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	4.53875439624955	4.36127911039472	4.31981055264282	4.19086388966339	3.60558133381576	3.96342852295115	3.88115382827193	3.94882456576389	-1.36844578850952	0.00208493249852108	0.0241345601418494
Merged-chr4-154927327-5	chr4	154927265	154927465	+	889.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178931, intron 1 of 7)	intron (NM_178931, intron 1 of 7)	712.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	3.42437818036809	3.40425235266461	3.09104948083961	3.18733361213946	3.63423354944565	3.90683079585702	3.72207257596304	3.58938030354444	1.44416167244222	0.00453112687081682	0.0441446864957392
Merged-chr13-62620944-3	chr13	62620855	62621055	+	735.9111330000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173381, intron 1 of 2)	intron (NM_173381, intron 1 of 2)	3227.0	NM_001324406	211378.0	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding	3.16545567161407	3.26749289304666	3.31209892094247	3.135191050136	4.31251254123646	3.90452715041823	3.9859141197448	3.82590231173686	2.58594989840305	2.83435177103278e-07	1.10485391407635e-05
Merged-chr16-23280648-4	chr16	23280568	23280768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	L3|LINE|CR1	-9802.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	6.38408663076381	5.97942648107432	6.6857616004733	6.68218738979144	5.65333922096398	5.82755779290424	6.35235315783613	6.11712055776793	-0.697288853458009	0.0154976595293771	0.10733754088173
Merged-chr8-18619276-4	chr8	18619122	18619322	+	951.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173189, intron 3 of 13)	B3|SINE|B2	24091.0	NM_173189	244329.0	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge	microcephaly, primary autosomal recessive 1	protein-coding	5.26913468393972	4.36094973504094	4.63852647228681	5.02781682015149	4.15383107009482	4.68830319499845	4.65670351717857	4.85997385387612	-0.550204369775006	0.193548533564145	0.493731393226286
Merged-chr4-122887127-4	chr4	122887028	122887228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-1052.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	5.28885532965594	5.12700699126504	5.09820987731655	5.29086572998976	5.33816247096785	5.49118818736323	5.03895575573906	5.16179168890527	0.108438201058595	0.718163454148156	0.887400659742356
Merged-chr15-98799630-3	chr15	98799532	98799732	+	810.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8293.0	NM_001013741	13199.0	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	3.3653935259903	3.79386300749588	3.65227976649862	3.22761241470959	3.83169477895336	3.71793372468571	3.63699910596047	3.426537888413	0.453382018450503	0.388061551802077	0.688846544177653
Merged-chr18-34889053-4	chr18	34888997	34889197	+	967.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27890.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	4.55596104040929	4.533778776762	4.55669062403001	4.14825209817383	4.92426118276348	4.64728323521284	4.45235861617834	4.67019604724407	0.556917797954155	0.141342242539987	0.418285360126131
Merged-chr8-107066331-3	chr8	107066258	107066458	+	833.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025458)	promoter-TSS (NM_025458)	-714.0	NM_025458	66269.0	Mm.23032	NM_025458	ENSMUSG00000031919	Tmed6	1810015P03Rik|1810018I24Rik	transmembrane p24 trafficking protein 6	protein-coding	4.46732948953469	3.99355323524493	4.3689678009431	4.26492637793127	3.25983064019415	3.42966697757713	3.37180521047429	3.38127718912832	-3.15588130657275	4.88044112935815e-08	2.2397480280244e-06
Merged-chr2-151000954-4	chr2	151000856	151001056	+	896.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207204, intron 1 of 23)	B3|SINE|B2	8442.0	NM_207204	78177.0	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding	3.97782148320324	3.96243454403236	4.12630754169228	4.32381619561693	4.26083222081721	3.93237325630114	4.15373867237891	4.37595948060798	0.18641946758862	0.662314378820576	0.859988966581593
Merged-chr10-112060134-4	chr10	112060032	112060232	+	666.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027018)	promoter-TSS (NM_027018)	-57.0	NM_027018	69286.0	Mm.47058	NM_027018	ENSMUSG00000020213	Glipr1l1	1700011E04Rik	GLI pathogenesis-related 1 like 1	protein-coding	3.75057077532726	3.72787363335023	3.47786826842363	3.61244820278452	3.5096669983913	3.82011482680104	3.95731481393601	3.34909487532982	0.0993188086455283	0.844585292703037	0.94111801479867
Merged-chr17-48347484-4	chr17	48347393	48347593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031254, intron 1 of 4)	intron (NM_031254, intron 1 of 4)	1092.0	NM_001272078	83433.0	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	6.25141715344536	6.13096586320817	6.32919306573182	6.5906828641367	6.45927450532856	6.67777835263272	6.33327916063335	6.48169419766107	0.202195498936999	0.389087900296605	0.689374802932542
Merged-chr2-133497979-4	chr2	133497871	133498071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54188.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	6.00908540923985	5.97401655290729	6.19657133082967	6.41236392089622	6.16978389564232	6.0946637238593	6.23920520494102	6.02797192197001	-0.0622551147702147	0.799617070191352	0.922629879999082
Merged-chr5-96172029-3	chr5	96171931	96172131	+	809.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10041.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	3.08242508702498	3.38836551626538	3.40745173835745	3.62710187158712	3.5611079843401	3.46158048194844	3.55492805542392	3.6651490166856	0.517985453886643	0.338485068963931	0.648052521556422
Merged-chr11-101979584-4	chr11	101979471	101979671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028207, intron 2 of 2)	intron (NM_028207, intron 2 of 2)	5220.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	6.43786109591495	6.34884843094231	5.94124668268145	6.24576107972168	6.44668646142551	6.14346497667269	6.24937464297617	6.34942021927447	0.0788615111875324	0.738590946846306	0.896845135631335
Merged-chr10-63429576-4	chr10	63429484	63429684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177612)	promoter-TSS (NM_177612)	-514.0	NM_177612	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	8.21359594341813	8.1477437426956	7.82848616625867	7.9836362263847	8.3750676512764	8.3389789980696	8.07940080210243	8.15591272098278	0.249858622555276	0.148711737684577	0.430640877813283
Merged-chr4-54338673-3	chr4	54338564	54338764	+	871.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	512619.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	3.19921024594737	3.13606846166934	3.92940352046531	3.85648549212169	2.66708990757226	2.88603330761632	2.99217306325162	2.85193752399563	-3.35811481861579	1.99543652578273e-05	0.000508168788796741
Merged-chr10-13833986-4	chr10	13833947	13834147	+	958.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	34910.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	3.83395624819183	3.94212983918934	4.0538918382765	4.13024558314432	4.50987414129697	4.41245974833941	4.26531838726963	4.28214400408009	0.913671815186479	0.024932531674699	0.148173388333756
Merged-chr3-84228365-2	chr3	84228265	84228465	+	832.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271726, intron 1 of 11)	intron (NM_001271726, intron 1 of 11)	-7488.0	NM_030706	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	3.52821447403563	3.16141133861424	3.11301277328927	3.1012527499499	2.97299039648266	3.09379110060429	3.10191508627792	3.1713780967671	-0.584589340107692	0.312573731127992	0.624506978273154
Merged-chr15-82346069-6	chr15	82346037	82346237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026914)	promoter-TSS (NM_026914)	91.0	NM_026914	69029.0	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	6.71608203613698	6.96644560699706	7.2757020191866	6.53820865124366	6.93361217052608	7.43164686146969	6.85707073460832	7.15539441096457	0.298157346627068	0.226182137190666	0.534714293609392
Merged-chr2-181917632-4	chr2	181917578	181917778	+	978.392822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53318.0	NM_025901	67005.0	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	5.10983504438108	4.68947242832108	4.9805088455823	4.81658075652081	4.37109673736003	4.97421876124767	4.88618574713483	5.58751451467788	0.236312911822391	0.560487966026767	0.804528775788886
Merged-chr17-27790199-4	chr17	27790082	27790282	+	946.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033279, intron 2 of 4)	intron (NM_001033279, intron 2 of 4)	30360.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	4.44903293147916	4.45391133512804	4.535893996663	4.98511336281025	4.77076291652691	4.3333377739756	4.51527796953788	4.72572540754328	-0.0934353742541823	0.812725462128092	0.927656717651261
Merged-chr13-56335558-3	chr13	56335437	56335637	+	777.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27363.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	4.34960317340753	3.58578032805062	4.53087913708292	4.02274998016452	3.89053708640859	4.01102482070752	4.12082637240089	4.18178371977097	-0.281400537121291	0.561446838885593	0.80494560024742
Merged-chr18-69570497-4	chr18	69570391	69570591	+	970.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	224331.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	5.04696551127775	5.04724954917503	5.2358603125867	5.27954527090496	4.61547259578703	5.28636968735712	5.02325112528455	4.93889975310628	-0.365200133198284	0.274843449867279	0.586581569311358
Merged-chr7-16071068-4	chr7	16070968	16071168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347559)	promoter-TSS (NM_001347559)	-777.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	7.12681632623464	6.86925396174679	7.18312122317203	7.27223020419414	6.73117749164074	6.601381580448	7.04649658720339	7.0771963695753	-0.344642265270063	0.110725332324156	0.367564519611095
Merged-chr5-91023334-3	chr5	91023229	91023429	+	873.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4188.0	NM_053087	71920.0	Mm.197319	NM_053087	ENSMUSG00000035020	Epgn	2310069M11Rik|epigen	epithelial mitogen	protein-coding	3.61005031997282	3.31706588982145	4.1777709758674	4.16771562857534	3.08929404094518	3.19736613544022	3.84158362017289	3.3691572955543	-1.44572717362628	0.0233885517035884	0.141968607629952
Merged-chr2-129596103-4	chr2	129595994	129596194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	632.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	7.48085398538305	7.72657077948895	7.66868967540051	7.65533085419786	8.05623548599583	8.39235463546395	8.08309325319576	8.02896500808418	0.656463058998316	0.000159093301825857	0.00300135227422811
Merged-chr12-41238315-4	chr12	41238225	41238425	+	977.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	214235.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	5.12901005907294	5.16839706291533	5.34100274150814	5.38422134304781	4.81216074992532	4.97449782652909	5.00320302965623	5.44351625346816	-0.364462375050355	0.261297847188698	0.573233645684815
Merged-chr4-123749870-1	chr4	123749770	123749970	+	1000.0	f0_c57.idr	intron (NM_023423, intron 1 of 4)	CpG	429.0	NM_023423	68050.0	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	4.31639969638816	4.64235072511136	4.71660645759855	4.37732561274234	4.86047627164623	4.7720351328112	4.93481651160509	5.01740988688784	0.814361804064468	0.0185945625985692	0.121995570092924
Merged-chr8-111052379-4	chr8	111052265	111052465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146217, intron 15 of 20)	intron (NM_146217, intron 15 of 20)	-3974.0	NM_028274	72544.0	Mm.24174	NM_028274	ENSMUSG00000109941	Exosc6	2610510N21Rik|C76919|Mtr3	exosome component 6	protein-coding	5.52081072370272	5.59379741924656	5.37943454697868	5.62414204510963	5.54652554812919	5.29178709712509	5.49407635423925	5.43451609497167	-0.156264090269904	0.568226766581695	0.808586868024762
Merged-chr15-91260150-3	chr15	91260047	91260247	+	759.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	-68140.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	3.73953271174938	3.84118302224899	3.78997985235814	4.26528438559282	3.51505863276904	3.36661525396242	3.50602062730423	3.63204872116342	-1.35411152602838	0.00832418684455279	0.069056794336646
Merged-chr19-12445197-4	chr19	12445090	12445290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-15589.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	6.71895087450023	6.98694200664169	6.53352708963136	6.66475548937419	6.782385926876	6.55063172293108	6.44909408622964	6.51199939202213	-0.212659459768738	0.337303438263127	0.647036656408706
Merged-chr12-86893218-4	chr12	86893112	86893312	+	882.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8398.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	4.02299077404015	4.12668522732106	3.79026320737395	3.73627398584542	4.52241961388607	4.75073689929751	4.29161358994058	4.50763924258192	1.50604288212078	0.000229242867002831	0.00407092094709777
Merged-chr2-49364046-4	chr2	49364007	49364207	+	931.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	-87379.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	4.53431362928137	4.94121261334872	4.84914258920154	5.19020372791115	4.62646606288993	4.62169834511705	4.6404628759082	4.57584260925427	-0.636969908858761	0.0781724492469227	0.302437045599886
Merged-chr6-53376597-3	chr6	53376491	53376691	+	786.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 3 of 10)	intron (NM_001327821, intron 3 of 10)	89288.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	3.80276537649448	3.10179298893687	3.55918504710015	3.38130382588089	3.57339502402422	3.73056828287157	3.49044675546735	3.55715761554542	0.358344553343419	0.5029947114719	0.770098741000588
Merged-chr7-75551152-4	chr7	75551059	75551259	+	946.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 2 of 36)	intron (NM_029332, intron 2 of 36)	95625.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	4.67799034673023	5.19945956885372	4.72103882528724	4.61374549484176	5.19347370236246	4.89870337023789	4.89047927323889	5.28071140481046	0.516652334496761	0.140083222128497	0.416157580026199
Merged-chr9-50565342-4	chr9	50565248	50565448	+	898.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008360, intron 2 of 7)	intron (NM_008360, intron 2 of 7)	-4080.0	NM_025687	66654.0	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	4.57868510578507	4.41867082261211	4.49867953159305	4.54461339560529	4.75330866686245	4.44853076459085	4.55818108291435	4.453522367615	0.128271471110488	0.721416933818708	0.888757393639022
Merged-chr6-47830557-4	chr6	47830456	47830656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177882)	promoter-TSS (NM_177882)	-51.0	NM_177882	330301.0	Mm.128149	NM_177882	ENSMUSG00000051499	Zfp786	A730012O14Rik|Znf786	zinc finger protein 786	protein-coding	6.51682000081108	6.04975586208464	6.05017364103892	6.53016390544391	6.41503464886382	6.18229660443285	6.56000359681014	6.19511745734473	0.0477972156381787	0.850173608972408	0.943475969197813
Merged-chr13-119601486-4	chr13	119601372	119601572	+	904.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177666, intron 2 of 3)	B1F1|SINE|Alu	-22347.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	4.38249231715176	4.03327683236986	4.30137071772984	3.46649941247134	3.84875250871027	4.2496678755534	3.94921478033712	4.81134952720726	0.43626253571332	0.408179637686039	0.704226101285379
Merged-chr7-4789116-10	chr7	4789071	4789271	+	897.6166380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029384, exon 1 of 2)	exon (NM_029384, exon 1 of 2)	389.0	NM_029384	664968.0	Mm.292837	NM_029384	ENSMUSG00000030431	Tmem238	2210411K11Rik	transmembrane protein 238	protein-coding	3.96197451688599	3.554193590627	4.59853011506055	4.01616850946848	4.02274394823383	3.92144358195759	3.83983871627029	4.39297109902108	-0.0560838320721195	0.912916970288455	0.96737778834115
Merged-chr11-72608487-4	chr11	72608390	72608590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025985, intron 1 of 5)	CpG	1229.0	NM_025985	67128.0	Mm.458052	NM_025985	ENSMUSG00000020794	Ube2g1	2700059C12Rik|AI256795|AU014992|AW552068|D130023C12Rik	ubiquitin-conjugating enzyme E2G 1	protein-coding	7.40317833204012	7.20150446997451	7.22196318718408	7.14372197557746	7.46689913756742	7.02062574062683	7.03577950909739	7.1381132022884	-0.0682994866525024	0.734939142397736	0.895358799451074
Merged-chr1-138174304-3	chr1	138174211	138174411	+	780.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	815.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	3.20100484503088	3.73146751713861	3.13269283386896	3.41644292743398	3.43450227704257	3.56107545636784	3.37598170908918	3.69533988303868	0.41176892449412	0.454418032796705	0.738247895996421
Merged-chr1-134303810-3	chr1	134303716	134303916	+	810.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001144855, intron 24 of 28)	intron (NM_001144855, intron 24 of 28)	13812.0	NM_031189	17928.0	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	3.20225480640616	3.93190500067121	3.6736882305307	3.37295102801524	3.4990517807925	3.63298379555986	3.44596720419465	3.56875601548399	-0.115388390676121	0.830816410281362	0.935077092131695
Merged-chr3-55354206-4	chr3	55354102	55354302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	-107526.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	8.01211245878883	7.71519823995414	8.04004889459899	8.20560779980018	7.9819360032832	8.21099970149806	8.00165221948265	8.02808602807426	0.0575851220477848	0.747445132583708	0.900560236507876
Merged-chr6-99666794-4	chr6	99666690	99666890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025829)	promoter-TSS (NM_025829)	-19.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	4.86720032535908	4.71424243006989	4.96760082162511	4.75084490786594	4.62353259991049	4.7313364175398	4.80976671302368	4.79343483555128	-0.176445901420272	0.596762468377278	0.824946763915719
Merged-chr11-116648698-3	chr11	116648573	116648773	+	806.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030206, intron 3 of 3)	intron (NM_030206, intron 3 of 3)	5640.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	3.44201598861624	3.50459447551291	3.39207034420647	3.38749753666586	3.02327702054885	3.14921718610791	2.81385589729777	3.10331176286863	-1.63422307250078	0.00628824612464709	0.0561564663744157
Merged-chr10-70243299-4	chr10	70243189	70243389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1987.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	7.19869757380774	6.93935105173073	7.38836002484282	7.44370606251505	7.03886598385804	7.31948944421398	7.5565770303279	7.40250445437427	0.0996522062845463	0.64187913531994	0.848925046283704
Merged-chr8-25056678-4	chr8	25056613	25056813	+	871.104126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 9 of 11)	intron (NM_031257, intron 9 of 11)	-17751.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	3.80559654979814	4.11576673727636	4.16979255898234	4.15485122924924	4.12707608194873	4.24914412549062	3.90506051728397	4.55373613786016	0.384826957714295	0.378428566988826	0.681014511407419
Merged-chr2-30062638-7	chr2	30062557	30062757	+	974.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023871, intron 1 of 7)	intron (NM_023871, intron 1 of 7)	661.0	NM_023871	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	4.95322831749688	5.03369143286166	5.2007093181482	4.55708652543453	4.68644755621306	4.90802333915137	4.53809270794249	5.13985516838796	-0.220639994719404	0.553721125454074	0.800354486026964
Merged-chr2-129182884-4	chr2	129182798	129182998	+	888.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2225.0	NR_045264	100048701.0	Mm.428544	NR_045264	ENSMUSG00000084826	AI847159	-	expressed sequence AI847159	ncRNA	5.01963146646714	5.46530680456281	4.87347634740345	4.87936297689544	5.51038537506632	4.93083395187754	4.99615221709054	4.90856102174666	0.0879775624567103	0.806632929643075	0.925456565104198
Merged-chr17-30070880-2	chr17	30070780	30070980	+	764.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356265, intron 2 of 5)	intron (NM_001356265, intron 2 of 5)	65841.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	3.28067071388359	3.2263891234872	3.69173596135567	3.73299219671406	3.36027626554521	3.12321245213252	3.2084463428636	3.39497613274437	-0.812624763672382	0.154061256674998	0.439181632779434
Merged-chr6-125410670-4	chr6	125410583	125410783	+	930.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30179.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	4.59084737909691	3.93800869764696	4.09590474238417	4.24883066553106	4.3633410725889	4.36622012866301	4.0787947185056	4.28080977631334	0.0998184493440388	0.812138134981504	0.927419976441895
Merged-chr4-135876084-4	chr4	135875977	135876177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-2231.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	6.32553386033662	5.76895341322831	6.03380014545045	6.17779613179208	6.53193972890559	6.25301442239414	5.93568853914649	6.13478450156737	0.227448808514833	0.389697112794286	0.689989074689298
Merged-chr16-62847087-4	chr16	62846986	62847186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026577)	promoter-TSS (NM_026577)	-46.0	NM_026577	68146.0	Mm.96833	NM_026577	ENSMUSG00000022911	Arl13b	A530097K21Rik|A930014M17Rik|Arl2l1|C530009C10Rik|hnn	ADP-ribosylation factor-like 13B	protein-coding	9.03724045905089	9.07796525471795	8.99601498648875	9.25786676276895	9.2498013257643	9.18472152658273	9.36175603609689	8.93128670648241	0.113886573414723	0.474524214854848	0.751750703074855
Merged-chr1-67044146-3	chr1	67044049	67044249	+	814.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5277.0	NM_021295	14768.0	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	3.4007746464736	3.32652656062184	3.82685402644789	3.54828428319017	3.05014166822166	3.19744801031312	3.49417597525572	3.21935359367396	-1.0455114097051	0.065095077858862	0.271503994924383
Merged-chr17-65613786-8	chr17	65613674	65613874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013933)	promoter-TSS (NM_013933)	-219.0	NM_013933	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	7.30556767705986	7.64266434218436	7.88008692691997	7.23324015326804	7.46884706031106	7.70583657222484	7.82799692251415	7.78827874056975	0.220240378049643	0.300595638637877	0.612505973963948
Merged-chr2-77946044-4	chr2	77945971	77946171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030560, intron 1 of 20)	CpG	285.0	NM_001290740	80744.0	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein	protein-coding	6.63630535707748	6.3372569446174	6.97729209322564	6.20109974110426	6.51105446357337	6.52925689366345	6.35634285327152	6.69140111249507	-0.0455559537693105	0.858759343542032	0.946576014812915
Merged-chr11-115514463-4	chr11	115514368	115514568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008258)	promoter-TSS (NM_008258)	-75.0	NM_008258	15374.0	Mm.1775	NM_008258	ENSMUSG00000020737	Jpt1	Hn1	Jupiter microtubule associated homolog 1	protein-coding	7.55362856078902	7.98669623810996	7.09711916329328	7.33731585996582	7.74904650115202	7.76733726745482	7.35656763718527	7.40827667109939	0.0653705965122337	0.782849571506536	0.915388590183887
Merged-chr2-73567202-4	chr2	73567103	73567303	+	970.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007389, intron 7 of 8)	intron (NM_007389, intron 7 of 8)	13135.0	NM_007389	11435.0	Mm.4583	NM_007389	ENSMUSG00000027107	Chrna1	AI385656|AI608266|Achr-1|Acra	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	protein-coding	4.64038459894225	4.68437219434146	4.68214163754574	4.60564853568645	4.77871758131763	5.00623945378795	4.88019264813282	4.99839763095802	0.544821252132788	0.0955806882379846	0.338491358181577
Merged-chr10-75893251-4	chr10	75893141	75893341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358985)	promoter-TSS (NM_001358985)	-157.0	NR_152573	70377.0	Mm.275878	NM_024440	ENSMUSG00000009092	Derl3	1810006I20Rik|1810063P04Rik|IZP6|derlin-3	Der1-like domain family, member 3	protein-coding	7.91535052096043	8.23799438880606	8.14977708051592	8.17503956072866	8.38742706308221	8.42379763607121	8.44821245281865	8.29724974484068	0.332042255190655	0.0359296784344129	0.188323901419962
Merged-chr2-153163706-4	chr2	153163617	153163817	+	979.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	2416.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	5.12645859608447	5.21954066973306	4.58667998560728	4.72205084876305	4.94557780022796	5.17570440100655	4.65164510258979	4.3394080946116	-0.241054637787479	0.544725031665894	0.795488031924357
Merged-chr13-45458237-3	chr13	45458134	45458334	+	711.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	-49210.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	3.17847727937391	3.33890179209577	3.01121682635947	3.25730944351179	2.81122413771459	2.77551061986375	2.74267953399972	3.0681858672691	-1.60819907737256	0.0130160138609208	0.0950709954444824
Merged-chr10-82128100-6	chr10	82128055	82128255	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163064, intron 1 of 3)	CpG	142.0	NM_001163064	216177.0	Mm.482395	NM_001163064	ENSMUSG00000078435	AU041133	-	expressed sequence AU041133	protein-coding	4.94666290382603	4.24525555152571	5.18824213561788	4.81419605491238	4.73079400497924	4.69729137476243	4.98734040213078	4.80405883599031	-0.0566467420833273	0.882936115180138	0.955884066838138
Merged-chr7-45715343-4	chr7	45715236	45715436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020011)	promoter-TSS (NM_020011)	-129.0	NM_020011	56632.0	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	7.9822603230045	8.29982290418786	7.84348885690663	8.20776432038236	8.19038264981355	8.20234907302796	8.11429469906196	7.98519421860094	0.0307324965589196	0.861352196794723	0.947603037485356
Merged-chr3-137869607-4	chr3	137869498	137869698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033155, intron 1 of 7)	L1MB2|LINE|L1	1923.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	7.27190909180652	7.43909390292045	7.62196317366077	7.53430009124719	7.26459522340847	7.5034962245452	7.15866611108078	7.35214260789708	-0.206477395716076	0.269220307964201	0.580772632222867
Merged-chr10-20855193-3	chr10	20855049	20855249	+	921.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97398.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	4.26118749707512	4.43336449810488	4.67644973116118	5.09412978061299	3.95965181237165	4.28895012544113	4.0898794269647	4.70811382234735	-0.862417425161254	0.0599285562110871	0.258289718592126
Merged-chr11-53298718-2	chr11	53298618	53298818	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008300, intron 1 of 18)	intron (NM_008300, intron 1 of 18)	1761.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	2.10961426924537	1.97961980160807	2.03561383480746	1.68501615531666	2.07409378142697	2.28710435733467	2.23790306018402	2.30946151194825	1.89625447016619	0.0503953891833773	0.232913019069126
Merged-chr18-42011088-4	chr18	42010932	42011132	+	944.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-11983.0	NM_001033426	332309.0	Mm.240520	NM_001033426	ENSMUSG00000073574	Grxcr2	Gm851	glutaredoxin, cysteine rich 2	protein-coding	4.33238165265412	4.88319784357241	4.47400997363207	4.98727806872401	4.7761822435137	4.69220760914084	4.5394388505336	4.42596133685281	-0.206611669607272	0.597774809158595	0.825585260217697
Merged-chr2-130424830-4	chr2	130424726	130424926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114541)	promoter-TSS (NM_001114541)	-185.0	NM_001114541	319513.0	Mm.482539	NM_178762	ENSMUSG00000037773	Pced1a	A930025D01Rik|AI480484|Fam113a	PC-esterase domain containing 1A	protein-coding	7.05263128457123	7.16792575105717	6.74815602505024	6.99143389398238	7.05261275298136	6.92535809143395	6.75801459229892	6.75831076795552	-0.160139236669845	0.437433216287516	0.725709827551994
Merged-chr17-23786120-4	chr17	23785881	23786081	+	944.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029798)	promoter-TSS (NM_029798)	100.0	NM_029798	76917.0	Mm.269613	NM_029798	ENSMUSG00000023911	Flywch2	2810417J12Rik|3010014L17Rik|AW548203	FLYWCH family member 2	protein-coding	3.78628200407027	3.54389498024826	3.38666622367463	3.29346551496359	3.20385476062145	3.31115785108865	3.68132645787576	3.32495507967143	-0.403466891516555	0.46221252209985	0.74376780554653
Merged-chr5-139408129-3	chr5	139408037	139408237	+	941.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	1750.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	3.52282628603227	3.55630762356651	3.89215769387486	3.64482131662387	3.69699257215056	3.86696792632136	3.44913152207256	4.0996120484995	0.408476125953024	0.410533516480161	0.705915332033853
Merged-chr2-165367204-3	chr2	165367114	165367314	+	728.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5095.0	NM_001005425	381405.0	Mm.296323	NM_001005425	ENSMUSG00000056824	Zfp663	Gm1008	zinc finger protein 663	protein-coding	3.46570982462944	3.18986051396471	3.04744549202166	3.32634574378184	3.41141985338235	3.52863609227703	3.29056145419513	3.35782318772162	0.459007224756521	0.391894578703529	0.691574667597334
Merged-chr17-80008995-4	chr17	80008879	80009079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53289.0	NR_152119	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	5.92527434134102	6.10897993361343	6.0118030763757	5.99975321902863	5.99290960186383	5.38704987490439	6.0214119610623	5.47676123614475	-0.398162954903531	0.154762687542445	0.440141175346959
Merged-chr12-3818153-4	chr12	3818047	3818247	+	931.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	10987.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	5.04913119248066	4.5412053534918	5.23937096413791	5.7120693766778	4.78970706968546	4.74546499089559	5.05852873270131	5.37415517239368	-0.380323396531337	0.351004302511716	0.658499650733544
Merged-chr8-60983323-4	chr8	60983206	60983406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007711)	promoter-TSS (NM_007711)	5.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	8.52138771003952	8.40907847476169	8.48353579225187	8.73615470424267	8.55833011153017	8.45014658969879	8.68729181752171	8.22511287529967	-0.0700652151246983	0.684766006180058	0.870914954532591
Merged-chr9-78107882-2	chr9	78107782	78107982	+	650.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081490, intron 1 of 12)	intron (NM_001081490, intron 1 of 12)	774.0	NM_023605	71538.0	Mm.28584	NM_023605	ENSMUSG00000001366	Fbxo9	9030401P18Rik|AA986398	f-box protein 9	protein-coding	3.20527153224298	3.15354796596755	3.42794109828131	3.36850850257311	3.37580218372053	3.37713558635887	2.93065161027172	3.37398474314963	-0.057636878986034	0.919269132769274	0.970285021467879
Merged-chr8-46152489-4	chr8	46152384	46152584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11167.0	NM_025747	66756.0	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430	cilia and flagella associated protein 97	protein-coding	6.25988861349798	6.23718868190326	6.26099502244221	6.17404785501629	6.37695297792427	6.18819867609539	6.46802364032278	6.15826591560428	0.122629229052028	0.583455619400279	0.817141538741641
Merged-chr9-5311928-4	chr9	5311827	5312027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007609, intron 1 of 8)	RLTR17|LTR|ERVK	3078.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	6.83408866947571	6.65644962973044	6.08301817119456	5.64848188006824	6.5841836884929	6.59166252339191	6.31210948016803	6.05612460581682	0.0366002800964649	0.909165135397935	0.966233149271961
Merged-chr6-124759488-4	chr6	124759408	124759608	+	975.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302642)	TTS (NM_001302642)	-3021.0	NM_007881	13498.0	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	4.64609159934897	4.33971584943313	4.33775510597622	4.15124437555626	4.0850017154425	4.05532304747622	4.5543713150067	4.49880628203745	-0.13199824592571	0.752933368527964	0.902713603306311
Merged-chr18-82693023-4	chr18	82692930	82693130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177832)	promoter-TSS (NM_177832)	-296.0	NM_177832	329002.0	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	5.67758885396745	5.61294407346373	6.11059464759493	5.90690108525779	5.66271736050758	5.43594559596729	5.51489732671728	5.88739373571289	-0.336840943213751	0.227349524459535	0.536049324367241
Merged-chr17-85574778-3	chr17	85574676	85574876	+	888.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43620.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	4.17029969608133	4.33972232138031	4.48328787439155	4.50799996933444	3.58472717243646	3.93978605457781	3.74340360754052	3.75546638602993	-1.77752117339644	8.55066415888656e-05	0.00178274084406967
Merged-chr13-108135931-2	chr13	108135845	108136045	+	760.875	f0_balb.idr|f0_c57.idr	intron (NM_001360140, intron 1 of 4)	intron (NM_001360140, intron 1 of 4)	22680.0	NM_001360140	75597.0	Mm.276040	NM_001127346	ENSMUSG00000068184	Ndufaf2	1810058I14Rik|C86051|Ndufa12l|mimitin	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	protein-coding	4.32045603938824	3.98449270690433	4.05927104410591	4.52918787785229	4.01453627112574	3.97067429005443	4.08909938965813	3.90295783444833	-0.677398071384164	0.12220160149747	0.387412604355445
Merged-chr11-98959664-4	chr11	98959574	98959774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001176528)	promoter-TSS (NM_001176528)	-797.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	7.71567831077121	7.76937865988776	7.95661914205706	7.84918261924033	7.6811532695343	7.82644500629341	8.02871813400658	7.88843904346485	0.0410613809466389	0.811087468506923	0.926883359837906
Merged-chr2-91361439-4	chr2	91361348	91361548	+	983.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 3 of 8)	intron (NM_175123, intron 3 of 8)	83266.0	NM_001311144	228356.0	Mm.386861	NM_175123	ENSMUSG00000040591	1110051M20Rik	AI586322	RIKEN cDNA 1110051M20 gene	protein-coding	5.79140541172587	5.58262604532082	5.51035121413729	5.75241127263492	5.83439703197554	5.21345245580814	5.87209913175225	5.64242618607055	0.011318018859607	0.96849374082652	0.988694268692349
Merged-chr10-8777699-4	chr10	8777608	8777808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	108362.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	6.60837756966761	6.78675660894371	6.97520172494402	6.70316774193505	6.4064979089765	6.31835196492281	6.65173703226616	6.62045053095127	-0.384318082346778	0.0765007849747774	0.298844705214844
Merged-chr6-120783185-2	chr6	120783085	120783285	+	899.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081048, intron 1 of 9)	intron (NM_001081048, intron 1 of 9)	9417.0	NM_001081048	71803.0	Mm.425340	NM_001081048	ENSMUSG00000004902	Slc25a18	1500015I14Rik|AW125787	solute carrier family 25 (mitochondrial carrier), member 18	protein-coding	3.10200236933659	2.71075979329226	2.70889363039863	2.79191677229163	3.43916825800072	3.02998901246282	3.14469287427938	2.98222331536705	1.37944423990443	0.0274495626984207	0.157962036002174
Merged-chr10-81384308-4	chr10	81384213	81384413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133964)	promoter-TSS (NM_133964)	-115.0	NM_133964	102115.0	Mm.294975	NM_133964	ENSMUSG00000078440	Dohh	1110033C18Rik|AI585913|AL022869|Hlrc1	deoxyhypusine hydroxylase/monooxygenase	protein-coding	8.1339099403802	8.43605728092083	8.35223390600335	8.32603413244414	8.20120377143008	8.49170622470987	8.4113029880306	8.29738388799526	0.0412701675081277	0.798822326594034	0.922293177366371
Merged-chr11-5949765-4	chr11	5949693	5949893	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010292, exon 1 of 10)	5' UTR (NM_010292, exon 1 of 10)	288.0	NM_010292	103988.0	Mm.220358	NM_010292	ENSMUSG00000041798	Gck	GLK|Gk|Gls006|HK4|HKIV|HXKP|Hlb62|MODY2	glucokinase	protein-coding	5.38283733667861	5.20973694879538	5.43756839112061	5.09174994162117	5.24783203416312	5.06190860277449	5.08248500060105	5.45971555808109	-0.0874496810160617	0.775090462438501	0.91224145329603
Merged-chr2-121506659-4	chr2	121506548	121506748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030234)	promoter-TSS (NM_030234)	8.0	NM_026220	67532.0	Mm.440764	NM_026220	ENSMUSG00000068479	Mfap1a	4432409M24Rik|Mfap1	microfibrillar-associated protein 1A	protein-coding	6.16190170870321	5.77798881033118	5.51546458502082	5.99365863912587	6.01288747025552	5.94651117722491	6.09350274309065	6.1010388017913	0.234385512334375	0.368008839828307	0.672498811587355
Merged-chr11-34036511-4	chr11	34036399	34036599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-10429.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	6.86518616496462	7.26899876054007	6.68749708358836	6.46995632355793	7.35635826046821	7.27108540613733	7.01170812133906	6.99327720150664	0.443549991629907	0.0668631354991173	0.2757795082484
Merged-chr18-9732209-4	chr18	9732109	9732309	+	926.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	24561.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	4.7598348702724	4.6987662222919	4.76062897562791	4.9857636534209	4.64448920705283	4.43239304148176	4.28488143494043	4.14234418743085	-0.911427718317866	0.0172845813961532	0.115978433182201
Merged-chr19-21275866-4	chr19	21275773	21275973	+	795.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009551, intron 1 of 5)	intron (NM_009551, intron 1 of 5)	3595.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	3.0028840564627	3.1330075145745	3.30749572112003	2.87475459974247	3.22560176835646	3.24618188214018	3.12213226445296	3.55099443355461	0.822052037939488	0.152051204932691	0.435906076000675
Merged-chr15-58876352-4	chr15	58876224	58876424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026642, exon 1 of 1)	3' UTR (NM_026642, exon 1 of 1)	3675.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	6.11885962252772	6.06896838564538	5.5191455357613	5.97631882968318	6.34164631995416	6.10263097305617	5.87269699076353	6.31759292451796	0.361974896675671	0.173906146745788	0.468118807216218
Merged-chr3-152111214-3	chr3	152111112	152111312	+	751.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016867, intron 3 of 5)	intron (NM_016867, intron 3 of 5)	54688.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	3.8969586436687	3.48619175524263	3.7711580520914	3.4498606084787	3.39809487159312	3.33994945305045	3.34280726348424	3.15583285878117	-1.17145523138812	0.0323892031960291	0.176226825675032
Merged-chr5-99358186-4	chr5	99358083	99358283	+	984.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-105256.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.6202499304094	6.24571954251057	5.64607165742907	5.36236132684923	5.30886752642533	5.24651800449137	5.18487655319254	5.17191308023554	-0.913811129170521	0.00522353717781722	0.0490638892557208
Merged-chr15-51689723-4	chr15	51689625	51689825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	175736.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	6.43724685406772	6.04947493409651	6.31426024892292	6.82604626054371	6.24913944198132	6.41415006731201	6.53304978006765	6.08626881873532	-0.187238034410755	0.482521821148922	0.757307741831873
Merged-chr6-16360182-1	chr6	16360082	16360282	+	867.0	f0_c57.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	538259.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	2.55418153431372	2.49333082032062	2.55440515678085	2.15443193327538	3.54479678350491	3.06473488554102	3.38801951719896	3.74332064686868	7.38684898454534	3.0917959197225e-13	3.65566348455029e-11
Merged-chr18-9708710-3	chr18	9708607	9708807	+	945.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 1 of 9)	intron (NM_130449, intron 1 of 9)	1059.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	4.02452047074504	4.17329658837906	4.40277433513064	4.37437221457357	3.65750558776131	3.99180502959905	3.85432328736895	3.97297782963229	-1.06646733049702	0.0156546994607609	0.108067680430366
Merged-chr8-82984676-3	chr8	82984578	82984778	+	914.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	ORR1F|LTR|ERVL-MaLR	121322.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	4.10795088256116	3.90399474085208	4.05489546906387	4.54564522394099	4.4623343560635	4.52151396573445	4.8234040651487	4.38862801376517	0.829340355137635	0.0583072729559555	0.253826437426809
Merged-chr7-102565491-4	chr7	102565390	102565590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009277)	promoter-TSS (NM_009277)	-8.0	NM_009277	20821.0	Mm.321227	NM_009277	ENSMUSG00000030966	Trim21	Ro52|Ssa1	tripartite motif-containing 21	protein-coding	7.42331892897604	7.22001225023381	7.16557760663638	7.43654987339464	7.14288500678341	7.13067036644786	7.49492927064793	6.93423438720937	-0.176130523184773	0.388464342772753	0.688981838974675
Merged-chr2-167944943-3	chr2	167944846	167945046	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	12619.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	3.43878473615909	3.47587765826757	3.89762963883411	4.21285175153074	3.47468673525399	3.28363002655579	3.23282003265646	3.75999668953219	-1.10127403285064	0.0609862867766699	0.260988972142721
Merged-chr4-120854864-4	chr4	120854764	120854964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182929)	promoter-TSS (NM_182929)	65.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	6.58827065292849	6.72503905312381	6.69751425075266	6.32351186700896	6.78838488413601	6.64854267036821	7.00851897161338	6.5847306631657	0.272894888243612	0.223641287611955	0.531766652116835
Merged-chr2-122028505-4	chr2	122028405	122028605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144545)	promoter-TSS (NM_144545)	-75.0	NM_144545	78655.0	Mm.458184	NM_144545	ENSMUSG00000027236	Eif3j1	1810016I04Rik|2700079K05Rik|AA409117|AA409446|C78575|Eif3j|Eif3j-1|Eif3j-2|Eif3j2|Eif3s1|eIF-3-alpha-A|eIF-3-alpha-B|eIF3-alpha|eIF3-p35|eIF3j-A|eIF3j-B	eukaryotic translation initiation factor 3, subunit J1	protein-coding	8.86126697279028	9.04624052738498	8.93166831719986	8.734168570109	9.11361648588623	9.13555556080138	9.22046379442673	8.93723851802191	0.261732376667836	0.0867312352157181	0.321209032577518
Merged-chr10-52234061-1	chr10	52233961	52234161	+	714.0	f0_balb.idr	intron (NM_001347444, intron 1 of 9)	CpG	442.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	3.97113207196636	4.0645837000287	4.47291394218479	4.25143372394426	3.6512298373479	4.04318786887663	3.67477986428535	4.28478438944306	-0.713368779922299	0.133695297099287	0.407088321825123
Merged-chr13-52589248-4	chr13	52589145	52589345	+	996.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198977, intron 1 of 13)	intron (NM_001198977, intron 1 of 13)	5808.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	5.70915640722101	5.70749308721553	5.68550410560755	6.2621935394557	5.41112050940384	5.15766666686653	5.70509263739348	5.34123365521578	-0.782518222911596	0.0109657205581643	0.0842903913185289
Merged-chr14-103513255-4	chr14	103513149	103513349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022886)	promoter-TSS (NM_022886)	-92.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	6.05591917255062	5.54663918993435	6.11357358726594	6.52855266914697	5.06594507493782	5.39551630655234	5.69863405536829	5.38183483905844	-1.19545131718349	0.000246596389903564	0.00431053154148963
Merged-chr4-134703359-5	chr4	134703262	134703462	+	894.773315	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_207237, exon 1 of 12)	exon (NM_207237, exon 1 of 12)	928.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	4.0836593648995	4.56069158893798	4.33019715868572	4.4384409986551	4.38285239178381	4.31474592717497	4.3968179518963	4.64297189241389	0.153023739293181	0.693815265053894	0.875575355056842
Merged-chr10-40256941-4	chr10	40256838	40257038	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359493, intron 2 of 5)	intron (NM_001359493, intron 2 of 5)	624.0	NM_001359493	67371.0	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	3.96201796104226	4.163652686024	4.09659206840226	3.70912092137047	3.95735721212729	3.56700626812746	3.74415859199596	3.91228264029441	-0.492999001053996	0.299443911395833	0.611652880049459
Merged-chr1-165853888-2	chr1	165853788	165853988	+	695.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113391, intron 1 of 7)	intron (NM_001113391, intron 1 of 7)	65207.0	NM_001113392	12503.0	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	3.04212961188075	3.45857195401919	3.41138110325117	3.07003814115488	3.48883737412478	3.47106784383331	3.34349777549801	3.29775339290257	0.543724903345329	0.320049552661327	0.631859556610888
Merged-chr14-49065735-4	chr14	49065633	49065833	+	952.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144535)	promoter-TSS (NM_144535)	-816.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	3.69430457836483	3.96815464389706	4.22046538979909	3.93205812876663	4.0674132398651	3.81141390839238	3.79237615103291	4.17858803229316	0.0347028865318304	0.93915146344641	0.977979927971735
Merged-chr3-76001377-3	chr3	76001271	76001471	+	962.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-44422.0	NM_001291069	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	4.06611455859156	3.63686362848593	4.10976862648774	4.17513649911639	3.76088493089636	3.64953801976421	3.81114894322125	4.06418665019857	-0.529334871975458	0.262161487994229	0.574100843086496
Merged-chr9-61983415-4	chr9	61983319	61983519	+	918.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 2 of 7)	ORR1E|LTR|ERVL-MaLR	-36620.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	5.21393039507535	5.1680020508422	4.55800900132499	5.35216701458695	5.030778806427	4.7395768147254	5.07018116164795	4.55521081396609	-0.47827821057091	0.199882577735736	0.50185984431534
Merged-chr5-123427766-4	chr5	123427644	123427844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133917, intron 1 of 16)	intron (NM_133917, intron 1 of 16)	32946.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	6.84069713786658	6.88349850753135	7.07929189758133	7.18803181061375	6.73167683166921	6.61896503779383	6.72214130330459	6.82321696655847	-0.406268674165043	0.0463772547342871	0.22132662519154
Merged-chr11-108343960-4	chr11	108343885	108344085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011101)	promoter-TSS (NM_011101)	-97.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	6.43475228624875	6.22320208040827	6.06532125060218	6.15027105740088	6.30775903006666	6.82694186091997	6.29770732414034	6.5442412702965	0.422297257756253	0.080283920818607	0.307150185431208
Merged-chr8-115427592-4	chr8	115427502	115427702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	279292.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	6.81689467242153	6.70277773140136	6.44243002249227	6.3646213372692	6.3928180618611	6.6700811669664	6.50994573095969	6.32814521918017	-0.15641440005003	0.497041188678033	0.766905722034893
Merged-chr9-114690341-4	chr9	114690237	114690437	+	955.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146229, intron 2 of 12)	intron (NM_146229, intron 2 of 12)	1506.0	NM_146229	235661.0	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	4.51003331761167	3.99802181473039	4.75399123606504	4.38696239087936	4.35857251715572	4.12420536280084	4.19093798324962	4.46886529707388	-0.326366974452416	0.438400665565494	0.726385226396654
Merged-chr7-128129441-4	chr7	128129344	128129544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021334)	promoter-TSS (NM_021334)	-124.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	5.36271501092909	5.38407057144382	5.09371513552506	5.2375219532085	5.08381501204082	5.12801380746347	4.89252376806067	5.02163760975406	-0.450740812780926	0.136802672043227	0.411349382676314
Merged-chr17-56251650-4	chr17	56251556	56251756	+	890.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5137.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	4.85003737050525	5.24088639195149	4.21488439123288	4.29302915015111	4.71797085478723	4.68407928139221	4.39713365429682	4.58899651265664	-0.241127462194486	0.580719575542518	0.815898280122002
Merged-chr2-92185273-10	chr2	92185149	92185349	+	944.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109691)	promoter-TSS (NM_001109691)	-234.0	NM_001109691	192285.0	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	4.68399012674126	5.22801890385861	4.68473309661535	4.5181466677879	5.42082265767897	4.86393414321243	5.12460628560002	5.053499641125	0.662740374353769	0.0685764965388026	0.279645170274158
Merged-chr17-56585338-4	chr17	56585220	56585420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355463)	promoter-TSS (NM_001355463)	338.0	NM_001163300	224903.0	Mm.255066	NM_001163300	ENSMUSG00000071054	Safb	3110021E02Rik|5330423C17Rik|AU018122|D18386|E130307D12|HAP|HET|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding	6.38901566852219	6.05410358323023	5.9375150899751	5.58790461006769	6.39537633686947	6.16101391613563	6.18104816298582	6.35209899389445	0.424351059861544	0.116302630720897	0.377298434532733
Merged-chr18-69680828-3	chr18	69680729	69680929	+	881.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 17 of 19)	intron (NM_001361128, intron 17 of 19)	-244730.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	4.65650476438911	4.25038339410467	4.2355692343024	4.74803347133499	4.00584087069845	3.86860060819564	4.34498116597063	3.80784290421612	-1.18892720646166	0.00828051918330663	0.0687827138462577
Merged-chr4-11016721-4	chr4	11016638	11016838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9119.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	6.86689019572288	7.31570112350954	6.5769846229357	7.22759500992944	7.37868722502644	7.41757422726334	7.35551939478584	7.40603722471045	0.467478307152508	0.0341731600318605	0.182544942432105
Merged-chr14-104523670-4	chr14	104523579	104523779	+	978.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1013.0	NM_026047	72486.0	Mm.291811	NM_026047	ENSMUSG00000022120	Rnf219	2610206B13Rik|2810449K13Rik|AI451544	ring finger protein 219	protein-coding	5.12002662244222	5.03241706009364	4.90748002883369	5.19529740984282	5.3508553242864	5.29432522011563	5.30488828533646	4.90425556508455	0.283445102773376	0.363025400745701	0.668208368026741
Merged-chr11-54630323-5	chr11	54630205	54630405	+	922.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 11 of 28)	(TG)n|Simple_repeat|Simple_repeat	34159.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	3.67373405820087	3.57748793774189	3.38766689646919	3.48837823755046	3.45280894023325	3.6848713099616	3.60703118788172	4.0279571167491	0.537930197708917	0.281528711284294	0.593640601389524
Merged-chr11-3168544-2	chr11	3168433	3168633	+	970.75	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 7 of 32)	(TG)n|Simple_repeat|Simple_repeat	24930.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	3.39379521567095	3.01727627439961	3.56925394065659	3.31277924458512	2.71185929715063	2.67998903313897	2.72769562703584	2.80879609099856	-2.98768978414224	7.8965704665289e-05	0.00166096332516862
Merged-chr4-97885740-3	chr4	97885646	97885846	+	822.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	108120.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	3.2344427853161	3.35389557147313	3.44856790963318	3.71145698758482	2.99429423942916	2.93749093485144	3.10271156770522	3.11158716319986	-1.68792027960887	0.00497649561817032	0.0473831812049571
Merged-chr18-80371378-3	chr18	80371281	80371481	+	889.377808	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7127.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	3.848461216066	3.83889749539628	3.84899511961761	4.11613359931557	3.78147057133742	3.91528583399086	4.19269029316824	3.99534739095821	0.11593525997669	0.795791112768865	0.920939778337976
Merged-chr6-137414745-4	chr6	137414645	137414845	+	843.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 14 of 26)	B3|SINE|B2	4024.0	NM_001164403	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	4.05713475646173	4.48016976883614	4.25992778582698	4.00157230506985	4.52105145430345	4.52324818825582	4.60210333494289	4.39061213297255	0.729851277488665	0.061659303457123	0.262713410885438
Merged-chr7-75774727-4	chr7	75774625	75774825	+	893.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-73613.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	4.28760239732419	4.4222468902887	4.66789131761903	3.8484094518743	3.92262750976116	4.46173880719141	4.31176600070019	4.0956138282349	-0.297438911468956	0.516642801823617	0.778349451006108
Merged-chr2-153174493-4	chr2	153174414	153174614	+	954.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	L1ME1|LINE|L1	13213.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	4.86934764209352	4.87169680236662	4.48608655753409	4.39226186563424	4.82193537907288	4.78763805774895	4.37434415748738	4.68944482722269	0.0470428745667057	0.90102335209297	0.96332884045309
Merged-chr7-140941870-4	chr7	140941759	140941959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153832, intron 1 of 11)	intron (NR_153832, intron 1 of 11)	468.0	NM_145387	212974.0	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	7.39996105854436	7.65824056745129	7.41111774860844	6.86167354643907	7.44003329510052	7.74529382629852	7.67780099988554	7.37609284167862	0.282552446412697	0.213059677396575	0.51819647746712
Merged-chr2-79512103-4	chr2	79512008	79512208	+	848.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55472.0	NM_010894	18012.0	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Nd1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding	4.01954429703676	4.31304868902634	4.51705888338509	4.46551382803769	4.1217205810153	3.72830310277602	3.72602810063691	4.11517784790834	-1.03929853140182	0.0231700585234722	0.141038858246198
Merged-chr15-18821581-4	chr15	18821479	18821679	+	943.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009865, intron 1 of 11)	intron (NM_009865, intron 1 of 11)	1250.0	NM_009865	320873.0	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding	4.65549533755478	4.57237752566357	4.99350110751709	5.07846903370346	5.14360724817	4.87463604780599	5.06339976569522	4.73612012724111	0.226554442555066	0.521016382923975	0.78111362380667
Merged-chr7-84594603-4	chr7	84594525	84594725	+	886.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010176, intron 9 of 13)	intron (NM_010176, intron 9 of 13)	11317.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	4.59552575431093	4.24903646353676	4.24694719575674	4.55117756440502	4.34624249149789	4.47288511301732	4.78317275551318	4.70282982738451	0.345015865163232	0.370033205732461	0.67422484451122
Merged-chr19-10869747-4	chr19	10869600	10869800	+	990.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133804)	promoter-TSS (NM_133804)	79.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	5.02364118962227	4.7972943036658	4.85287447229709	4.89395554902846	4.69260787303099	5.02621326249949	4.75484674084169	5.05270579736437	-0.0221258087163265	0.94652268173223	0.980920139816526
Merged-chr11-117199715-4	chr11	117199612	117199812	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113486)	promoter-TSS (NM_001113486)	51.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	4.19988430006508	4.0291346980305	4.15443548679371	4.00582495838965	4.32847387057649	4.37212323736699	3.93612209330391	4.44366465586719	0.485516378099955	0.234670989073513	0.544535838308798
Merged-chr1-38902794-3	chr1	38902692	38902892	+	782.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-4632.0	NM_145142	98388.0	Mm.260054	NM_145142	ENSMUSG00000026080	Chst10	AI507003|AU041319|Hnk-1st|ST	carbohydrate sulfotransferase 10	protein-coding	4.0982826684395	4.27300472184341	4.38018627196952	4.6858318454607	3.43285607676566	3.52814757077464	3.53710837765181	3.67651082116015	-2.57426353252097	5.28189449607776e-07	1.95101177133533e-05
Merged-chr10-93688470-4	chr10	93688390	93688590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021320, intron 3 of 9)	intron (NM_021320, intron 3 of 9)	-5168.0	NR_038017	100504069.0	Mm.391412	NR_038017	ENSMUSG00000085723	Gm15915	-	predicted gene 15915	ncRNA	6.39666182153835	6.56278342152588	6.21388249652123	6.28822945390363	6.21956366612428	6.24433593801264	6.12162799327739	6.32290098816967	-0.212816452544315	0.346478395067015	0.654719806798213
Merged-chr14-47087452-3	chr14	47087360	47087560	+	787.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 9 of 12)	MIRb|SINE|MIR	18483.0	NM_001310544	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	3.59842592771749	3.6287425558274	3.54735109316255	3.62476107250724	3.47888421631827	3.22428069141744	3.48015855829373	3.49170645795039	-0.586164607219888	0.243611710588337	0.554650479735382
Merged-chr12-85534456-6	chr12	85534355	85534555	+	822.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60565.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	3.64303402944023	3.30038331148605	3.98210746029005	3.85898744494409	3.89824765289149	3.86931560632233	3.62933717155354	3.5850922173441	0.092762675857322	0.857008435536476	0.946159157665131
Merged-chr17-34849765-2	chr17	34849669	34849869	+	776.5	f0_c57.idr|f1_balb.idr	promoter-TSS (NM_001045864)	promoter-TSS (NM_001045864)	435.0	NM_021337	108077.0	Mm.18845	NM_021337	ENSMUSG00000040356	Skiv2l	4930534J06Rik|AW214248|Ddx13|SKI|Ski2w	superkiller viralicidic activity 2-like (S. cerevisiae)	protein-coding	2.9973806583959	3.09683785794898	2.99775523178981	2.61809062016113	3.33986360744899	3.04424772189634	2.78896135767968	3.17024437027137	0.697075969025013	0.278881724061923	0.591088414882637
Merged-chr5-73490901-4	chr5	73490808	73491008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190733)	promoter-TSS (NM_001190733)	-118.0	NM_001190733	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	9.3398193204241	9.41680384026351	9.48092222600756	9.61573484094393	9.35095798261474	9.47581367535668	9.57496787666656	9.08451357514174	-0.105401440050831	0.51574456736128	0.777736287514515
Merged-chr17-37045603-3	chr17	37045506	37045706	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019439)	promoter-TSS (NM_019439)	-360.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	4.93419683161743	4.76952268473137	4.51999233821982	4.5556971916152	4.67288959718761	4.78081904735348	4.81133824613308	4.72240166565293	0.104669609140982	0.762048955657802	0.906776947564005
Merged-chr10-41302778-1	chr10	41302678	41302878	+	1000.0	f0_c57.idr	intron (NM_133999, intron 1 of 22)	intron (NM_133999, intron 1 of 22)	463.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	4.69690087246111	4.42138759333895	4.65672361758415	4.93206751767091	5.00620200749248	4.91131493282223	4.89521299444318	4.98160235974706	0.492409138012163	0.154949448259699	0.440400900154555
Merged-chr1-171268421-3	chr1	171268334	171268534	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-1894.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	3.96454331072737	3.72716912321855	3.7364068392265	2.49844046279091	6.01308853069718	5.81219992591686	5.98106203790611	6.27749854205083	6.1507576227643	3.87348746920788e-07	1.47124314071904e-05
Merged-chr17-5293883-4	chr17	5293786	5293986	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 8 of 19)	intron (NM_001085355, intron 8 of 19)	124881.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	4.68350474772296	4.55130125905187	4.76051011412766	5.09519900976509	4.43392749060341	4.55580894757436	4.53999542583778	5.10938548230208	-0.249368800975968	0.524132194408749	0.782772137578204
Merged-chr15-81564078-3	chr15	81563967	81564167	+	893.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22147.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	3.47796430124359	3.53453507095122	3.72880128600259	3.3687570303146	3.67477145573127	3.41373574365266	3.28984402177941	3.42009410637112	-0.198966452228802	0.702534192886754	0.880288258302449
Merged-chr11-46120332-4	chr11	46120248	46120448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291891, intron 8 of 22)	intron (NM_001291891, intron 8 of 22)	-7556.0	NM_001311209	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	5.60631338182348	5.97449867246426	5.89358401460287	5.84574289161137	6.24293342953537	5.86999949237031	6.41616273636728	5.79261222202558	0.431450771700053	0.10886660119015	0.364196823147702
Merged-chr6-137471158-6	chr6	137471025	137471225	+	840.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48770.0	NM_001271589	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	3.79092563364323	3.92839561708757	4.25880472316212	3.79947535501357	3.4915161966475	3.41612925499724	3.72384916837549	3.83955819622034	-0.977485885472037	0.0501632147126767	0.232290188268598
Merged-chr10-105957631-4	chr10	105957546	105957746	+	859.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116167.0	NM_025602	52713.0	Mm.339224	NM_025602	ENSMUSG00000019897	Ccdc59	2300004H16Rik|D10Ertd718e	coiled-coil domain containing 59	protein-coding	4.75785816410606	4.41321738275781	4.82377638029087	5.04496575263682	4.25634242274094	4.13479389202956	4.20882225613007	4.06366133153094	-1.44146652461369	0.000377107253112043	0.00612651641269922
Merged-chr2-18687951-4	chr2	18687859	18688059	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10941.0	NM_007552	12151.0	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	3.93499432197735	3.37762159420097	3.41617109623552	3.83189425382812	4.3142652872669	3.90555118705306	3.76833868105392	4.22914091017011	1.13035157522922	0.0289036256216163	0.163353967662441
Merged-chr11-105577481-2	chr11	105577381	105577581	+	624.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-12505.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	3.10587023616076	3.27988652771179	3.51168836735114	2.96806840561122	3.48654740684182	3.2850576136269	3.44631628534849	3.45891967903664	0.728202697641524	0.187677426927528	0.48610501726011
Merged-chr7-45920703-4	chr7	45920635	45920835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001146346, exon 1 of 5)	5' UTR (NM_001146346, exon 1 of 5)	114.0	NM_001146346	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	5.01236167710311	5.50945187634038	5.33636834986169	4.56596512418628	5.25870263847216	5.39121304593992	5.25156085999835	5.30377856582845	0.292171019480755	0.409885821533358	0.70525942551561
Merged-chr3-109062610-4	chr3	109062507	109062707	+	982.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17892.0	NM_029054	74686.0	Mm.307948	NM_029054	ENSMUSG00000027880	Slc25a54	4930443G12Rik|SCaMC-1like	solute carrier family 25, member 54	protein-coding	5.06487456191842	5.08966135388915	5.0657239680303	5.15694980524248	5.0263281240593	5.36528086279726	5.10615961786252	4.88213744687007	0.00145001591126715	0.996262267471428	0.998602617451138
Merged-chr13-58486803-2	chr13	58486703	58486903	+	986.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83460.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	2.94827582190229	2.74322118138262	2.88648327543776	2.98834307106984	2.99016400086577	2.99340919736979	2.99664897528197	3.00635755646174	0.409296445617073	0.487984012379858	0.761126159857708
Merged-chr10-81185113-4	chr10	81185012	81185212	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190473, intron 2 of 8)	intron (NM_001190473, intron 2 of 8)	1194.0	NM_007828	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	3.97152804812678	4.41750212228982	4.11748137154457	3.75492178124377	4.36939307802457	4.33345177243734	3.90374063616856	3.55339371211855	-0.000280660536640099	0.999561068678454	0.999768819585389
Merged-chr5-100557215-4	chr5	100557120	100557320	+	952.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139198, intron 3 of 4)	intron (NM_139198, intron 3 of 4)	14985.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	4.84423432739108	4.79775224956778	5.18910242483491	5.13390729798388	6.44461986200169	6.37650053567015	6.50206017257792	6.28094247767728	2.26112064249583	6.83141423695198e-16	1.27770208591553e-13
Merged-chr9-83557468-4	chr9	83557321	83557521	+	811.37915	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	9083.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	3.54198785339863	3.95138265771886	3.89896698496476	3.40611260515497	3.48174409095114	3.92836654061857	3.58558415529611	3.48079136027459	-0.263809732373399	0.61338529567874	0.833272615488149
Merged-chr16-8470768-4	chr16	8470675	8470875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146247)	promoter-TSS (NM_146247)	-38.0	NM_146247	239706.0	Mm.214953	NM_146247	ENSMUSG00000039345	Mettl22	-	methyltransferase like 22	protein-coding	7.93880135257771	7.96773205678577	7.05178257491492	7.76340476538516	7.74589140647952	7.71387863227039	7.8950968525465	7.62114346712735	0.0206913265615379	0.927289159004006	0.973431384835132
Merged-chr5-28269896-4	chr5	28269801	28270001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-24113.0	NM_001310512	269637.0	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	6.05464521560501	6.28651670827182	6.39925819858173	6.55186981121446	5.83738631753225	6.21051587563	6.02479445774582	6.27207278422872	-0.399234247542227	0.111706911872241	0.369358771782146
Merged-chr13-51398881-4	chr13	51398758	51398958	+	981.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD2|LINE|L1	-9760.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	5.77758940148518	5.46241776200557	5.57980262616309	5.79614218764501	5.88159004650717	5.58405590670925	5.65433417053583	5.20410529809978	-0.0870148752621387	0.766429444672674	0.908638755872086
Merged-chr11-32267658-4	chr11	32267563	32267763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104306)	promoter-TSS (NR_104306)	44.0	NM_181569	17168.0	Mm.263161	NM_181569	ENSMUSG00000020289	Nprl3	Aag|CGTHBA|HS-26|HS-40|Mare|Phg|Prox1|m(alpha)RE	nitrogen permease regulator-like 3	protein-coding	8.00635466998038	7.85302117997402	7.64223496252039	8.14080347229416	7.60176503173382	7.81105880241372	8.02090208091837	8.0023193977994	-0.0854770791114239	0.66013387622609	0.858724170764591
Merged-chr12-24498659-4	chr12	24498496	24498696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028341)	promoter-TSS (NR_028341)	15.0	NR_028341	21340.0	Mm.39082	NM_020614	ENSMUSG00000059669	Taf1b	4930408G01Rik|A230108M10Rik|TAFI68|Tafi86|p63	TATA-box binding protein associated factor, RNA polymerase I, B	protein-coding	5.56319260730652	5.50874268785133	5.71357983625143	5.29559432852522	5.25053944585837	5.6845823784704	5.56207060068389	5.58638248713743	0.0113412474739343	0.968689098525636	0.988762939668968
Merged-chr13-81148023-4	chr13	81147948	81148148	+	891.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	183974.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	4.82772866669591	4.19189313151806	4.97803243016285	4.75786704690144	3.97448209160402	4.25270990011371	4.35397748210076	4.41557004054984	-1.07476659662335	0.010823314247798	0.0835748193582136
Merged-chr5-136046131-2	chr5	136046031	136046231	+	624.208374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7635.0	NM_175309	100647.0	Mm.3089	NM_175309	ENSMUSG00000042985	Upk3b	AI447729|AI957187|P35|PMS2L14|UpIIIb	uroplakin 3B	protein-coding	3.2882286321345	3.49042036319801	3.02849238091166	2.90695363817195	3.40049214646528	3.46199875127683	3.44025644747207	3.4528977737878	0.887900391721406	0.115705856263741	0.376388305895016
Merged-chr10-80680263-4	chr10	80680139	80680339	+	988.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3946.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	5.0476105171142	5.40097499969848	5.85322311909537	6.4010726608547	5.72659808045658	5.11023171381469	5.06306307693846	5.61587054986758	-0.625063636720838	0.117999481597956	0.380024220035269
Merged-chr17-35469120-1	chr17	35469020	35469220	+	562.0	f0_balb.idr	promoter-TSS (NM_010391)	promoter-TSS (NM_010391)	-969.0	NM_010391	15007.0	Mm.88795	NM_010391	ENSMUSG00000067235	H2-Q10	H-2Q10|Q10|Qa10	histocompatibility 2, Q region locus 10	protein-coding	2.62178442363749	2.71303257779038	2.56230145591865	2.72207527830766	2.26189085567382	2.22991720906968	2.2855367488636	2.36313817376187	-2.4767007820807	0.00306484164005465	0.0325357737654661
Merged-chr11-32559042-4	chr11	32558942	32559142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	25776.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	7.16974333388218	7.31536368616151	7.22672928944525	7.21877685578804	7.09532557843377	7.31318096667132	7.25414575542896	7.17730486207214	-0.0368410267265675	0.837803881132327	0.938468501433934
Merged-chr8-11049081-5	chr8	11048982	11049182	+	859.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 2 of 4)	intron (NR_046017, intron 2 of 4)	-40652.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	3.43017202931108	3.10331169280819	3.47938173282465	3.50141903726292	2.8055647921597	3.06577067515557	3.14335177622019	3.15304657003518	-1.39153594819198	0.0217372059295409	0.135294909134207
Merged-chr10-78356154-4	chr10	78356069	78356269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4469.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	6.23929263223154	6.31445757700747	6.27771577467853	6.09282561947572	6.36636832813848	6.1203075535195	6.2455911302257	6.0084060368234	-0.0349626247125239	0.880811389955957	0.955254661227374
Merged-chr1-162574301-4	chr1	162574181	162574381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016796, intron 1 of 7)	intron (NM_016796, intron 1 of 7)	3453.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	7.22727445191337	7.5727560096152	7.32110117683104	6.94547156194644	7.02873393462077	7.31700228080844	6.99690037881815	6.47236030693022	-0.401218065839503	0.103431570457591	0.35340614988507
Merged-chr18-82692333-4	chr18	82692259	82692459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177832, intron 1 of 29)	CpG	375.0	NM_177832	329002.0	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	5.96625045390981	6.21806741247024	6.42153186983678	5.89865360175821	6.01956185746867	6.27241130292188	5.91401565635396	5.98562380958389	-0.122773797100602	0.63279380851681	0.844171798793351
Merged-chr9-109058413-8	chr9	109058387	109058587	+	974.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026381)	TTS (NM_026381)	764.0	NM_001012236	22040.0	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	4.03185383193013	4.68480321757396	4.27580362352406	3.6802041567297	4.56331094878881	4.57380838480597	3.96178322579107	4.08239100938174	0.252024117173261	0.610770346593796	0.83192725376887
Merged-chr9-77936104-4	chr9	77936009	77936209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	18744.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	5.93222095320267	6.2451756053688	5.71321492169582	5.93861909693985	6.00908753188839	5.91656308796253	5.68442140862914	6.07695206615214	-0.0648430942259346	0.803518114391074	0.924176968365095
Merged-chr4-133756868-4	chr4	133756760	133756960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3249.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	6.50422895252048	6.62383693574455	6.5838783030797	6.06407231612535	6.40754414440994	6.47073258134371	6.31785081686424	6.34581112842838	-0.0873943047545649	0.717140455190235	0.886902970891993
Merged-chr13-5865465-4	chr13	5865346	5865546	+	935.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011803, intron 2 of 3)	intron (NM_011803, intron 2 of 3)	3957.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	4.71149798806868	4.70753032518148	4.56328729154513	4.04415502659026	4.67281125753371	4.43055131090963	4.37492078391544	4.52019868119201	-0.021512480115315	0.958025064468682	0.985024355229333
Merged-chr15-75085628-4	chr15	75085528	75085728	+	991.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	26309.0	NM_001357693	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	6.19884913568228	6.1628786631908	6.68679565603004	5.19465394276242	6.13965058142432	6.56758473015298	6.20777158907857	7.39375991007278	0.740400602346859	0.209689514953893	0.514175623015818
Merged-chr13-6471838-4	chr13	6471753	6471953	+	872.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76304.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	4.42745681782751	3.89052921745047	3.71824078300831	4.06904444981666	4.12734006692549	4.12432678354773	4.40673955992888	3.99785741869533	0.307743709429382	0.494618655613744	0.765224301099017
Merged-chr3-10430096-4	chr3	10429984	10430184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127191, intron 4 of 6)	intron (NM_001127191, intron 4 of 6)	10046.0	NM_029068	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	5.51522780672	5.07313371575816	5.34652519433394	5.70539537627994	5.5778746347649	5.220321799532	5.25852501338401	5.61379374999223	-0.016085813096607	0.959115902953148	0.985391533844807
Merged-chr3-9818178-4	chr3	9818076	9818276	+	923.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	15503.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.39471981818659	4.47969457592403	4.34821576932982	4.56804226478417	4.8129557768175	4.57161038913393	4.95480375383338	4.5245677600588	0.58955090690863	0.104530526057501	0.355556643135185
Merged-chr13-56176003-3	chr13	56175844	56176044	+	696.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001168615, exon 3 of 3)	3' UTR (NM_001168615, exon 3 of 3)	2941.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	2.90955442458544	2.80314084471031	2.85341641813257	3.0319287350807	2.67930372917626	2.55072103210589	2.52026886881213	2.66584452000942	-1.51584906621852	0.0280014468441592	0.160100577767501
Merged-chr3-37837520-3	chr3	37837427	37837627	+	709.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61286.0	NR_040559	626410.0	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	3.89524844442625	3.69590110980097	3.84746030710719	3.72382876475823	3.56419720967965	3.81005951412255	4.20664528521799	3.57238675005628	0.0689622951609025	0.887420755226996	0.957799052224803
Merged-chr8-13160882-4	chr8	13160775	13160975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010684, intron 1 of 8)	intron (NM_010684, intron 1 of 8)	1714.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	6.24111783523961	6.34930455107301	6.04724559447334	6.39564798735034	6.34860457267097	6.71989745272739	6.76614186207898	6.61640893965631	0.495531515764991	0.0321603462225184	0.175352771744937
Merged-chr11-115633052-4	chr11	115632895	115633095	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4700.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	3.85670932701909	4.00442559734113	4.14182322233791	3.6017275007383	3.92397033301029	4.0318219941417	4.0358030106205	4.05129920174284	0.2977986397396	0.507163035212482	0.772710503440438
Merged-chr13-29984937-4	chr13	29984846	29985046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289920)	promoter-TSS (NM_001289920)	-555.0	NM_001359994	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	5.93647186717696	6.0762423509732	6.00767128164652	6.00757945911007	6.13257935681652	6.46682286621984	6.54858377052642	6.39177067125421	0.572028701006697	0.0142354198521276	0.10108369409962
Merged-chr13-21549698-4	chr13	21549615	21549815	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	6305.0	NM_207572	404335.0	Mm.377341	NM_207572	ENSMUSG00000054890	Olfr1535	MOR256-36|MOR256-63|Olfr1365	olfactory receptor 1535	protein-coding	5.31147119211483	5.24648673762093	5.50366963383907	5.28276533476004	5.95671902217421	5.92207292567696	6.14609500748424	6.28955110495056	1.23888114408261	2.01061854775324e-06	6.57692176518969e-05
Merged-chr3-94482982-4	chr3	94482887	94483087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110353, intron 1 of 11)	intron (NR_110353, intron 1 of 11)	265.0	NR_110353	78784.0	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	6.48553375050123	6.16349815331932	6.22095986418342	6.46026029725772	5.61805126545372	5.76631557798683	5.75329742636582	5.94955518490994	-0.905356449863033	0.000245850436585342	0.00430277556570152
Merged-chr18-57578528-4	chr18	57578409	57578609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 3 of 6)	intron (NM_029290, intron 3 of 6)	-26112.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	5.8694385024729	5.67521118149895	5.72736333559475	5.54639073448077	5.96304378137363	5.7713853214769	6.1727700849789	5.53318405528476	0.307455812478272	0.26148274337789	0.573420426116668
Merged-chr2-180920096-4	chr2	180919963	180920163	+	858.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173761, intron 2 of 4)	intron (NM_173761, intron 2 of 4)	873.0	NM_173761	228994.0	Mm.30205	NM_173761	ENSMUSG00000038848	Ythdf1	2210410K23Rik|8030473O16	YTH domain family 1	protein-coding	4.12542229764886	3.91955664046612	4.30021395157523	4.18116327848036	4.19701865218787	4.25073253290468	4.01250839502393	4.1235463756567	0.0276423224254738	0.94614948133388	0.980814540550536
Merged-chr16-95659709-4	chr16	95659613	95659813	+	945.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42694.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	5.18988996386013	5.37661660531596	4.9202287116442	5.34050708786627	4.86270403093189	4.76160826334144	5.16509577943332	5.09245677274744	-0.479767706837168	0.139342716845008	0.415077432195474
Merged-chr12-28750437-4	chr12	28750337	28750537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178811)	promoter-TSS (NM_178811)	16.0	NM_001161411	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	6.82752151196828	7.23904159400725	6.79909394342364	7.07053855651165	7.30881039169291	7.33784232577701	7.23251430061299	7.02619547492602	0.311810256130355	0.126361435458101	0.395109849519951
Merged-chr12-85467683-2	chr12	85467583	85467783	+	706.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6207.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	3.37835673369817	3.05399492490192	2.96581876455239	2.40492463449748	2.88331513057905	2.80732422670035	2.82823317512215	2.76817723954367	-0.762131868771634	0.295949851183567	0.607840340861675
Merged-chr2-59019195-1	chr2	59019095	59019295	+	581.0	f0_balb.idr	intron (NM_001362394, intron 1 of 13)	intron (NM_001362394, intron 1 of 13)	141488.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	3.2004850219632	2.92726019311049	3.40057464157809	3.06454017692353	2.81561455084266	2.86139718164645	2.88846331223141	3.19908269493409	-0.866684778191639	0.165887954302648	0.456845174245986
Merged-chr5-140197924-2	chr5	140197824	140198024	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152617, intron 10 of 16)	intron (NR_152617, intron 10 of 16)	-23006.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	3.39714025842622	3.28121379444916	3.45431165512705	3.57828118373004	3.21677812123334	3.51195680974854	3.59538980467507	3.60870395027424	0.155437250025117	0.76658043225312	0.908660493187862
Merged-chr15-63965562-4	chr15	63965470	63965670	+	895.020874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360038, intron 2 of 11)	intron (NM_001360038, intron 2 of 11)	32496.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.6075247068177	4.25817442889568	4.29879281636229	4.57846352321174	4.81289353848353	4.61583083209385	4.62509219025898	4.85381562909647	0.608726143221775	0.0942831080405741	0.335935192832759
Merged-chr1-192137154-3	chr1	192137044	192137244	+	949.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033536, intron 1 of 3)	CpG	246.0	NR_033536	100038712.0	Mm.474908	NR_033536	ENSMUSG00000097316	Gm10516	-	predicted gene 10516	ncRNA	4.32252979906829	4.25583000636678	4.44860259250537	4.30527019933738	4.12455818207151	4.57940689381717	3.77639721241212	4.66401682153562	-0.00784534339213104	0.985961927922179	0.994788540667462
Merged-chr12-111445280-2	chr12	111445180	111445380	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009396, exon 2 of 12)	exon (NM_009396, exon 2 of 12)	2619.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	3.45066095206398	3.50933570794052	3.55935307151793	3.0341762355029	3.43940199980566	3.72929067331838	3.43750208336269	3.44922646845561	0.418560080782798	0.439363080711946	0.727238209473655
Merged-chr15-78448395-4	chr15	78448286	78448486	+	800.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355601, intron 10 of 17)	intron (NM_001355601, intron 10 of 17)	19822.0	NR_110357	72844.0	Mm.390816	NM_001081367	ENSMUSG00000033287	Kctd17	2900008M13Rik|AA414907|AW742389|N28155	potassium channel tetramerisation domain containing 17	protein-coding	4.21384499792673	4.07246783355783	3.81460476616	3.58212836153106	4.08651617055603	4.54407269174632	4.27734680510454	3.92421927128559	0.7592227076823	0.103178453404429	0.352873128956895
Merged-chr8-93011616-2	chr8	93011497	93011697	+	562.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36595.0	NM_001013764	244595.0	Mm.390089	NM_001013764	ENSMUSG00000071047	Ces1a	Ces1l|EG244595|Gm4976	carboxylesterase 1A	protein-coding	3.45526737085932	3.33255370366178	3.45573196533595	3.21509255533685	3.52785551896371	3.77601370963898	3.44229643736801	3.45385299829671	0.681164197806329	0.177987744141761	0.47379644735344
Merged-chr17-66219936-4	chr17	66219886	66220086	+	893.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96466.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	4.23047536686545	4.13729911954215	4.47635605853403	4.72672808066184	4.29394846249006	4.1072264986377	4.02045115598263	3.86776016982691	-0.834347911714145	0.0586454213414951	0.25485819925919
Merged-chr3-32398608-4	chr3	32398503	32398703	+	957.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32938.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	4.32325636747047	4.95129436009708	4.71121288182121	4.24828952423553	4.71938217751086	4.72792990266166	4.4898871251913	4.84845531577024	0.259924007630005	0.508058632743036	0.773277710730372
Merged-chr5-147915305-2	chr5	147915205	147915405	+	816.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20490.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	3.28649878690414	3.32967983456257	3.61262435103011	3.03302233395645	3.68043705444495	3.40146057703639	3.14759005116476	3.61036799730155	0.537527163636072	0.34306214867654	0.65177687656873
Merged-chr2-102827974-4	chr2	102827865	102828065	+	925.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 11 of 13)	MTC|LTR|ERVL-MaLR	73700.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.75941529901403	3.62582145611796	4.07006603089951	3.74082804742539	4.36221753399481	4.44892577939588	3.95747168417688	3.8693796049707	1.02132259693775	0.0257079881608905	0.151241333110507
Merged-chr2-90545466-4	chr2	90545361	90545561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	35186.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	7.21946108728053	7.97927375768608	7.35983853729199	6.8238926299726	7.58731586744068	7.9477182514965	7.15015900251159	6.8510466846008	0.0461514154460831	0.917798744241834	0.969728921891019
Merged-chr6-26297568-4	chr6	26297467	26297667	+	836.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	366141.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	4.22167909364442	4.39962914965954	4.35120912081334	3.89994707407676	4.24281497456983	4.30256404307148	4.20363883704901	4.12611999674402	0.00756372618330363	0.985499535300499	0.99468068720618
Merged-chr15-38299282-4	chr15	38299160	38299360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013692, intron 1 of 3)	CpG	640.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	9.0539553857409	9.19041187896049	9.10546366646551	8.79374315845965	9.07355078526776	9.37234868214722	9.13835368570792	8.7848199298698	0.0834558830114266	0.639569905906619	0.847607151813091
Merged-chr4-152176819-4	chr4	152176731	152176931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1269.0	NM_133348	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	5.45616282858266	5.43262391671303	5.15293182954777	5.45046762862911	5.16492036636273	5.22384817294131	5.28780702638256	5.58150007319004	-0.118866152253071	0.68667209976637	0.871874882587332
Merged-chr16-31938596-4	chr16	31938465	31938665	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172822, intron 1 of 2)	MT2B|LTR|ERVL	4714.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	4.63475000632218	5.01977837140545	4.79678666292156	4.72566447958779	4.82886382869838	4.93282616363896	5.1592121092563	4.71558466750153	0.236270727487306	0.485487872181151	0.759349088660037
Merged-chr1-46022459-3	chr1	46022342	46022542	+	904.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037691, intron 3 of 3)	intron (NR_037691, intron 3 of 3)	7995.0	NR_037690	212225.0	Mm.78540	NM_172504	ENSMUSG00000044457	Stk-ps2	4930509O22|EG212225|Gm4776	serine/threonine kinase 2	pseudo	3.52239925051215	3.74943650123324	3.73383596002229	3.64553119555883	3.46691897290457	3.51665372956266	3.56509156666399	3.82451815663384	-0.217329018009422	0.653850787140378	0.855255621917139
Merged-chr11-9535048-4	chr11	9534982	9535182	+	998.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 47 of 61)	intron (NM_178259, intron 47 of 61)	343140.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	4.77843530364215	4.50151721815752	4.70745237401387	5.03196726768831	4.4121561405412	4.63946501019416	4.48761378111199	4.41586609581241	-0.652043374939066	0.0781657769452353	0.302437045599886
Merged-chr13-38037194-4	chr13	38037100	38037300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027724)	promoter-TSS (NM_027724)	211.0	NM_024242	71340.0	Mm.297130	NM_024242	ENSMUSG00000021428	Riok1	3110046C13Rik|5430416A05Rik|Ad034	RIO kinase 1	protein-coding	7.02381162589513	7.03464507353534	6.50046772282985	6.79937106876998	6.91346870677921	7.28444073426365	7.16047267934372	7.26415826791942	0.415365409340798	0.0552344992636536	0.24572207448995
Merged-chr15-100048356-4	chr15	100048251	100048451	+	943.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	9687.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	4.83505991061886	4.51835925920616	4.55563364560107	4.59434913817228	4.94876670653441	4.73369222229695	4.88193934636162	5.22943053902404	0.689753637840943	0.0432965188435022	0.21166741938762
Merged-chr7-126645860-3	chr7	126645760	126645960	+	793.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3449.0	NM_029339	75565.0	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	3.88358375513084	3.76016396799732	3.34415099519025	3.48197297324377	3.7529592362979	3.86425926180747	3.57357222141348	3.46963615707217	0.141694298078536	0.780617861126426	0.914612084362692
Merged-chr13-94284585-2	chr13	94284485	94284685	+	825.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346609, intron 1 of 8)	intron (NM_001346609, intron 1 of 8)	696.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	2.88924093484971	2.84691682578792	2.62037118725589	2.84348259596953	2.994601947342	2.99699727514127	2.87932908954647	2.88816005960795	0.596197069166255	0.328281882909765	0.63972994972442
Merged-chr2-132027616-4	chr2	132027541	132027741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 1 of 10)	intron (NM_175445, intron 1 of 10)	2347.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	6.20451583357555	6.30734345380758	5.95487690869819	5.9933602788261	5.99809605313554	6.15368559612795	6.29903535472044	5.99588646906091	-0.00659555360864611	0.978335555711756	0.992331272967115
Merged-chr18-25546041-3	chr18	25545960	25546160	+	833.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	133688.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	3.55054207959779	3.47949007142544	3.76150501482721	3.94698435372994	3.79218758991964	3.66646698028724	3.53788855733983	3.60500499250784	-0.163654733152872	0.742393379310013	0.898494026733066
Merged-chr8-26154101-4	chr8	26154037	26154237	+	599.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4032.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	3.25732374085115	3.35986145416742	3.31903264210363	3.46627102127439	3.26982615613872	3.54854974419788	3.66632982741701	3.53818659651799	0.500607857661655	0.335601205409614	0.645927430703489
Merged-chr16-85139472-4	chr16	85139378	85139578	+	936.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	34229.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	4.5656794053309	4.96612022582719	4.56638521890631	4.70496311212945	5.33809508476839	4.87607595004916	5.3870938214153	4.73632719319158	0.806117969393566	0.0249777921434634	0.148380426220963
Merged-chr3-148959511-4	chr3	148959419	148959619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4884.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	6.97693628543584	7.01657877545544	6.95396209964164	7.13234577788251	6.49442980257621	6.45344581547423	6.69248672514366	6.01584283895915	-0.83778325589144	0.000194680904211654	0.00355494922546981
Merged-chr14-25694074-4	chr14	25693962	25694162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134084)	promoter-TSS (NM_134084)	-108.0	NM_134084	105675.0	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	7.80003325524572	7.91538928354406	7.99006812761629	8.04649920738255	7.67678999461315	8.03250361423506	8.04869304771548	7.87937768177861	-0.0444537037758556	0.799430931807016	0.922561881598139
Merged-chr11-26586208-4	chr11	26586101	26586301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	7719.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	6.59598928595902	6.41179235228834	6.77135528534953	7.06772856946595	6.56734399561832	6.37598202004766	6.41550326799125	6.17135068286334	-0.511945623898363	0.0377418974553569	0.194232558670729
Merged-chr1-143954649-2	chr1	143954549	143954749	+	666.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	49500.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	3.05575621734656	2.89492281305875	3.17030211971454	2.59251197061005	3.40897929463026	2.74770958073838	3.10192704444668	3.05451954755734	0.645453745003098	0.336313026556816	0.646373023283045
Merged-chr10-68715595-4	chr10	68715510	68715710	+	942.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8136.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	4.53038396476689	4.34298317568648	4.73764814273005	4.54003725094222	5.04600328620718	4.75185447087993	4.98633017322769	5.00777775054485	0.86586562068705	0.0106505947772807	0.0826265597440937
Merged-chr15-6277936-4	chr15	6277848	6278048	+	923.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21841.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	4.99916969412008	4.85545059420444	4.59469087942675	4.50504927679827	4.71989507584475	5.23093980746254	4.73474846828428	4.59176170949477	0.195701771183175	0.598346487366839	0.825910070864782
Merged-chr18-20897143-2	chr18	20897043	20897243	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1065.0	NM_177038	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	3.27567158607005	3.00106241305206	2.9972201379436	2.74515242139241	3.29079358822731	3.22895662543357	2.78818854533071	2.72095950342181	0.0792135659859079	0.905835040144392	0.965033641268493
Merged-chr15-99024878-3	chr15	99024776	99024976	+	726.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5015.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	3.17150370060348	3.01869806320673	3.62601574478712	3.31630631446061	3.40951635761013	3.47636760011003	3.60986118765793	3.62375631119978	0.779654809338985	0.154009915419654	0.43912320820604
Merged-chr3-135690919-4	chr3	135690816	135691016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	CpG	631.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	5.58205756771029	5.6385078135378	5.91887987257263	5.57441422206067	5.77541287847194	5.81199420367271	5.31566297738826	5.89343776987074	0.0678878136347572	0.808280853519124	0.926004687049714
Merged-chr16-20403454-4	chr16	20403354	20403554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176839, intron 5 of 6)	intron (NM_176839, intron 5 of 6)	22940.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	7.01500942733033	7.24610692051522	6.87856765071064	6.38702591534728	6.97035366754657	7.0550263476013	6.3497947337386	6.52553741107813	-0.210802467222464	0.443639088149079	0.730108641783081
Merged-chr2-14224568-4	chr2	14224456	14224656	+	956.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-4858.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	4.73866444640076	4.56052353369706	4.66764707234595	4.95963017623982	4.46625802766262	4.30643999209834	4.48993078077567	4.22924113441821	-0.830481623557266	0.0267618838236898	0.155441527610113
Merged-chr17-33718784-4	chr17	33718681	33718881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145486)	promoter-TSS (NM_145486)	-104.0	NR_045522	224703.0	Mm.311439	NM_145486	ENSMUSG00000079557	March2	9530046H09Rik|MARCH-II	membrane-associated ring finger (C3HC4) 2	protein-coding	8.19162903056958	8.35976957248657	7.62304428327642	8.17571874307413	8.1841354171186	8.37660369282095	8.1601435317859	8.1078213603366	0.115259773957936	0.558175886276165	0.803013031815704
Merged-chr3-104794672-4	chr3	104794562	104794762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291859)	TTS (NM_001291859)	5628.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	7.25311232906254	7.24058476957389	7.34414664529113	7.66811769778568	6.63003889757266	6.73205794593552	6.98028141271395	6.56559288958947	-0.919486683671312	1.76194379219194e-05	0.000456214613257293
Merged-chr3-30862088-4	chr3	30861982	30862182	+	872.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286994, intron 1 of 3)	intron (NM_001286994, intron 1 of 3)	6132.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	4.55766450164372	4.36480889633389	4.43084316229282	4.91127602136445	4.5143293685215	4.80746364867899	4.41120016315888	4.51438989784585	-0.0848627428172557	0.827343225017952	0.933797258511357
Merged-chr2-83744507-4	chr2	83744396	83744596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 2 of 29)	intron (NM_008402, intron 2 of 29)	20099.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	6.14152515600598	6.2382482540627	6.73269510810279	6.95805293734056	6.12655164081912	6.16593214277291	5.80728438377368	5.98282612864796	-0.823158640863166	0.00330994245225199	0.0344895906615202
Merged-chr10-69252555-3	chr10	69252458	69252658	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252637, intron 4 of 10)	intron (NM_001252637, intron 4 of 10)	39364.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	5.15469988842084	5.10283116141345	4.92247476906532	5.02859466131969	5.16196168730617	4.72563344815694	5.03625640977174	5.02427007800789	-0.0890762894023035	0.779193280133164	0.913841690258744
Merged-chr7-48959003-4	chr7	48958901	48959101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111016)	promoter-TSS (NM_001111016)	-72.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	5.31388890644948	5.36917950763144	5.28409215680625	5.34710216049863	5.18138110670679	5.18718652436211	5.79984884080741	5.28044223355382	0.098338101479517	0.748051747586112	0.900803182957449
Merged-chr9-119977039-4	chr9	119976929	119977129	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153287, exon 2 of 5)	exon (NM_153287, exon 2 of 5)	5994.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	5.06152707558462	4.94209126479498	4.99798219962488	4.44591661521947	4.96942366201071	4.79464928575087	4.97352913885738	4.99456347958589	0.149481926503212	0.672111026674266	0.865040336461153
Merged-chr2-93646091-2	chr2	93645996	93646196	+	687.5	f0_balb.idr|f0_c57.idr	intron (NM_007442, intron 1 of 3)	CpG	3662.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	3.40152001565826	3.40195353121721	3.63255233424853	3.72667182345695	3.74298828087032	3.57839120317521	3.66912444569223	3.87007167402055	0.493255468317918	0.3166609438891	0.628632250037157
Merged-chr19-3906352-2	chr19	3906252	3906452	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136091, intron 1 of 19)	intron (NM_001136091, intron 1 of 19)	631.0	NM_001167784	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	3.43291760815497	3.30551995933379	3.26227281318567	3.20862779205054	3.45667634360435	3.54859730332518	3.1246896181879	3.48368529266749	0.40572289106879	0.442378556032265	0.729092878573229
Merged-chr17-48230883-4	chr17	48230770	48230970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER54A|LTR|ERVL	-1869.0	NM_001347399	58217.0	Mm.248352	NM_021406	ENSMUSG00000042265	Trem1	-	triggering receptor expressed on myeloid cells 1	protein-coding	5.46358267289311	5.68453111372039	5.70548015156456	5.79460682053266	5.40763904378814	5.38474063186533	6.08532461848815	5.36919610080799	-0.127890280236073	0.675531284973155	0.866777974061798
Merged-chr1-64305709-4	chr1	64305577	64305777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-184288.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	7.2751423726001	7.90177355320837	8.01959412351091	7.57508197584235	7.75878412681917	7.93142867412522	7.40985838802583	7.43156683968785	-0.0923074738323753	0.684704836439867	0.870914954532591
Merged-chr5-32996022-3	chr5	32995924	32996124	+	975.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22792.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	4.41132218443166	3.64400575224423	4.30047413057182	4.34576700869481	3.58822141345702	3.90165726145768	4.15858531293432	3.71768142412405	-0.951479223151202	0.0578276763641273	0.252475996805632
Merged-chr1-171370047-4	chr1	171369950	171370150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027893)	promoter-TSS (NM_027893)	-123.0	NM_027893	71740.0	Mm.263414	NM_027893	ENSMUSG00000006411	Nectin4	1200017F15Rik|Prr4|Pvrl4	nectin cell adhesion molecule 4	protein-coding	5.52053324936252	5.48131432587282	5.12900929708432	5.75976502642113	5.46384704550732	5.61100389390283	5.89750142065205	6.02169056496485	0.422242513698864	0.16781767801481	0.459727302598474
Merged-chr2-6436230-4	chr2	6436136	6436336	+	891.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181399, intron 13 of 13)	intron (NM_181399, intron 13 of 13)	83500.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	4.38925142416254	4.24642545469375	4.34573123767829	4.58844001347604	4.26056221891843	4.16937993397982	4.56869829133289	4.7918985473845	0.135203732634189	0.738010659142289	0.896580162228794
Merged-chr9-110645363-4	chr9	110645277	110645477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183276, intron 1 of 53)	intron (NM_183276, intron 1 of 53)	8784.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	6.06740958693604	5.79819193130106	5.50619766599844	5.47000585311454	6.02722988764698	6.24206304763587	5.70193724291397	6.02406333109559	0.468833644303568	0.0961740398682948	0.339831810156144
Merged-chr16-35903174-4	chr16	35903091	35903291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31809.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	5.89841436664066	5.87751912579369	5.67006598698823	5.62165116811715	6.23240509010624	6.34509516663775	5.91487295159504	6.20378796620525	0.665918720774574	0.00739640321219132	0.0633773048822315
Merged-chr6-82824529-4	chr6	82824449	82824649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50095.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	6.55677518790048	6.41596548400051	6.87667491883202	6.81136357485699	6.2737385139051	6.16940896826385	6.39189350984146	6.31028382397862	-0.580018633913401	0.0107566655959062	0.0832769959159245
Merged-chr1-171129492-4	chr1	171129388	171129588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025321, exon 6 of 6)	3' UTR (NM_025321, exon 6 of 6)	7827.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	7.89392505684051	7.57432836893403	8.11310610356663	8.17202906833721	7.33465145925303	7.11197193400277	7.75524953039258	7.61721434802262	-0.634709257193847	0.00402050626291549	0.0402246821551942
Merged-chr1-151926277-4	chr1	151926190	151926390	+	910.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 3 of 5)	intron (NM_197990, intron 3 of 5)	164030.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	4.72943998655184	4.54435360564305	4.21863739343166	4.31610857517166	4.18126221280265	4.19040135245434	4.33672578204375	4.39632216241511	-0.436430662891186	0.272047070980377	0.583640920649594
Merged-chr18-23751740-3	chr18	23751650	23751850	+	952.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162942)	promoter-TSS (NM_001162942)	555.0	NR_126066	100502834.0	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	-	predicted gene 15972	ncRNA	3.97855801298425	3.77522647353825	3.73985778169511	3.94772740618133	3.6247051182389	3.626040644163	3.67184937768929	3.8864594017704	-0.491382740445392	0.287007711019593	0.598688122563992
Merged-chr14-67007666-4	chr14	67007582	67007782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009761, intron 1 of 5)	intron (NM_009761, intron 1 of 5)	1195.0	NM_009761	12177.0	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	6.35832558998646	6.357636311553	6.58699702123686	6.4668867972133	6.24981279405638	6.04390580255254	6.32691229601893	6.30029337145649	-0.312057923828841	0.159818930153133	0.447547078030129
Merged-chr12-3357012-4	chr12	3356896	3357096	+	990.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8136.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	5.80535247661808	6.13974417585059	5.5703131348202	5.255948106597	5.8993509380208	6.11682709156313	6.16263199497619	5.41391373163296	0.327966426963274	0.313733144938554	0.625716930246892
Merged-chr7-45343762-3	chr7	45343663	45343863	+	826.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029741, exon 22 of 30)	exon (NM_029741, exon 22 of 30)	8494.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	3.9453408548444	3.73420162686137	3.33918181275261	3.34815956162365	3.34241275053335	3.69310635126185	3.44903623518897	3.51768212407301	-0.350267523296955	0.515407540832345	0.777533445789008
Merged-chr13-9878112-4	chr13	9878016	9878216	+	988.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033269, exon 5 of 5)	exon (NM_033269, exon 5 of 5)	-112795.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	5.02978490108393	4.83957131526593	5.16954772908636	5.47357779454897	5.3020018571319	4.92914196850628	5.8492618773133	5.32065219968047	0.413919835500421	0.24907521964189	0.560244116255019
Merged-chr7-45456342-9	chr7	45456204	45456404	+	993.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030678, exon 16 of 16)	3' UTR (NM_030678, exon 16 of 16)	3582.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	5.07526128659095	5.1060340369438	5.74805718819961	5.60763528997709	5.45986409141865	5.61664851728783	5.78442179659777	5.54823023886996	0.302919587203976	0.331510250154368	0.642608063609417
Merged-chr13-74274498-1	chr13	74274398	74274598	+	551.0	f1_balb.idr	intron (NM_001317351, intron 2 of 9)	intron (NM_001317351, intron 2 of 9)	17833.0	NM_009644	11624.0	Mm.290446	NM_009644	ENSMUSG00000021575	Ahrr	mKIAA1234	aryl-hydrocarbon receptor repressor	protein-coding	2.91577977204143	3.43745189730531	3.18532560897086	2.50075544606739	3.21885508904831	3.58042166562248	3.17283660623512	3.35501181909861	1.00428999322937	0.149493092805475	0.431761771263985
Merged-chr10-128529073-5	chr10	128528984	128529184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3225.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	5.02870403854182	5.12870635798948	5.06282566961322	4.86078799446752	5.10518312003014	5.09875959774913	4.74670428716747	5.15413353103358	0.0486682379312351	0.878864607364087	0.954708519232108
Merged-chr12-118296401-4	chr12	118296295	118296495	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166385, intron 3 of 5)	ID_B1|SINE|B4	5045.0	NM_009239	20688.0	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	5.97621768065308	5.26918009428679	5.35327844391315	5.55280630112702	5.74497235332577	5.67446585105946	5.29552344982284	5.11196126306065	-0.127937652025597	0.696378427977321	0.877192562425854
Merged-chr2-118111785-4	chr2	118111659	118111859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011580)	promoter-TSS (NM_011580)	-117.0	NM_011580	21825.0	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	5.3847256671066	5.18514872896905	5.46440459100471	5.24718804447791	5.25369644948582	4.95121895298479	5.08965571780042	4.96926394071555	-0.435779185137916	0.15332549506066	0.437898153186247
Merged-chr9-107613402-1	chr9	107613302	107613502	+	642.333313	f1_c57bl6.idr	TTS (NM_008138)	TTS (NM_008138)	-4161.0	NM_001291539	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	2.9792633020468	2.8816037213574	2.85036009764006	2.91442759343983	2.88609886951616	3.02543125572109	3.02825110073691	3.30194313770845	0.660775133072076	0.262201255964215	0.574115106927125
Merged-chr9-119340008-4	chr9	119339916	119340116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010851)	promoter-TSS (NM_010851)	24.0	NM_010851	17874.0	Mm.213003	NM_010851	ENSMUSG00000032508	Myd88	-	myeloid differentiation primary response gene 88	protein-coding	6.06419426069149	6.47323848903395	5.79751088237093	5.92748238999221	6.44236293553434	6.5672846151568	6.45690163512275	6.12512569053614	0.481569477310736	0.0639127266014397	0.268565749379116
Merged-chr9-16042861-3	chr9	16042751	16042951	+	901.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 3 of 24)	intron (NM_001080814, intron 3 of 24)	-168295.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	4.50739335968502	4.48747284504166	4.89280790724241	5.06323720300125	4.42680138684294	4.14460444002834	4.16733757605845	4.12898869766566	-1.24197041602951	0.00265531279678455	0.0290594264394722
Merged-chr17-78682428-1	chr17	78682328	78682528	+	847.6666869999999	f0_balb.idr	intron (NM_011500, intron 6 of 17)	intron (NM_011500, intron 6 of 17)	54132.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	3.70211010269318	3.5131389735907	4.09786432651962	4.00108140109505	3.22392529540987	3.53202467060321	3.73706902179227	3.4138525907355	-1.16572311145829	0.0301082929958727	0.167624418236467
Merged-chr19-32758994-4	chr19	32758899	32759099	+	826.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 1 of 8)	intron (NM_008960, intron 1 of 8)	1422.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	3.91862502554109	3.72162705855723	3.7635111142443	3.91581914397154	3.86209116745607	4.22559149376884	3.74880313157494	4.01093848599107	0.364003699050033	0.416725854967175	0.710662693395928
Merged-chr6-115480894-4	chr6	115480787	115480987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 7 of 7)	MIR|SINE|MIR	58821.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	6.60922131316377	6.87102529023802	6.81531375580844	6.52044103179437	6.68347252663526	6.78685272335665	6.71157883586151	6.48923678972964	-0.044289062081423	0.836015030569495	0.937579599304841
Merged-chr15-13370045-4	chr15	13369959	13370159	+	943.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-196384.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	4.683944595786	4.36323058168113	5.29063290755409	5.17847722331022	5.03974692166731	5.12917126346927	4.89644996231932	4.98655892405817	0.145476627541387	0.702440716006944	0.880218082225556
Merged-chr4-149770796-2	chr4	149770702	149770902	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027460, intron 1 of 6)	intron (NM_027460, intron 1 of 6)	3465.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	2.94338062967659	2.84208753193288	2.94376389588594	2.75806481040571	2.98915336539734	2.86225500465904	2.7489784872944	2.82106090815823	-0.0161994616526037	0.978909807718726	0.992533278305621
Merged-chr4-86669462-4	chr4	86669370	86669570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007408, intron 1 of 7)	intron (NM_007408, intron 1 of 7)	589.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	7.75762839903252	8.00308382439649	8.03106021999804	7.66553149358022	7.62876966806473	7.73760538847633	8.03676401447821	7.90418097209433	-0.04555672984821	0.80838713538257	0.926066049335242
Merged-chr3-122169752-3	chr3	122169664	122169864	+	630.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007378, intron 44 of 49)	intron (NM_007378, intron 44 of 49)	-75793.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	3.47132246401808	3.44165178555064	3.41539983263174	3.52405528818186	3.42944370986553	3.27296097555911	3.70475744405724	3.5755588013941	0.124491095703357	0.805592828447112	0.92521045259115
Merged-chr14-121451283-4	chr14	121451178	121451378	+	910.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53976.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	4.39226652795411	4.96660561929704	4.5341348369282	4.7903864387696	4.5186123648377	4.91339268161398	5.01834444025324	4.84635378686213	0.267730957430779	0.471371128538816	0.749827406573597
Merged-chr12-76887008-4	chr12	76886898	76887098	+	934.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145927, intron 4 of 11)	ORR1E|LTR|ERVL-MaLR	49531.0	NM_145927	110606.0	Mm.151174	NM_145927	ENSMUSG00000033373	Fntb	2010013E13Rik|AA409500	farnesyltransferase, CAAX box, beta	protein-coding	4.62727056014896	4.50951543452738	4.78937325376378	4.92615605276121	5.23614280526664	4.76215243862143	5.06622722234475	4.78621377586526	0.507556310519195	0.151819604153123	0.435582554879889
Merged-chr7-126260975-2	chr7	126260875	126261075	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360811, intron 1 of 3)	intron (NM_001360811, intron 1 of 3)	-11521.0	NM_145587	104175.0	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding	3.64623784842592	3.71409482415012	3.22853231832618	3.38750895727137	3.65853959751606	3.53924511098492	3.63158599053797	3.78924044459231	0.490556342734702	0.330220105743789	0.641648008542111
Merged-chr6-71193369-4	chr6	71193263	71193463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6516.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	6.76352958499818	7.04997907375819	7.02198458032608	6.49652397123909	6.75935101932245	6.9967270932546	6.46177599427182	6.41760466728473	-0.229827746647577	0.350841860285782	0.658322282833594
Merged-chr10-86704809-4	chr10	86704723	86704923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003939)	promoter-TSS (NM_001003939)	621.0	NM_011631	22027.0	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	6.49144727963393	7.04796658205401	6.94299883852601	6.81129681409147	6.655395402795	6.78606781616016	6.18921331855362	6.53927614504927	-0.399046927319538	0.0933837528272648	0.334219737655465
Merged-chr12-16877133-8	chr12	16877014	16877214	+	911.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17864.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	5.45666865077507	5.29838540445799	5.05479853154446	5.22636390378184	5.12484417824463	5.57573903037637	5.40347537858451	5.15615836729007	0.0992876690585866	0.743837284624632	0.899089697091031
Merged-chr18-62046513-4	chr18	62046408	62046608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	93433.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	6.04588012437504	6.06662776027725	6.17019097602883	6.06423544292542	6.01082077624171	6.03895171602957	6.35268730316417	6.22310264751318	0.114374706031697	0.624687205425415	0.839581122865294
Merged-chr19-34334511-3	chr19	34334414	34334614	+	738.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43855.0	NM_001146708	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	3.3859958014932	3.77501432309727	3.3863919720453	3.82070469474171	3.31559857603528	3.73674743382866	3.88586138430274	3.56259100032588	0.0624894386644736	0.907561984923778	0.96572638861679
Merged-chr4-41359560-4	chr4	41359469	41359669	+	835.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355508, intron 1 of 6)	B1F2|SINE|Alu	7606.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	4.05628026766578	3.97654609088298	4.10265951894523	4.02220727155387	4.01926937577321	4.13190324031337	4.03940652697878	3.90675419324367	-0.0325947352544294	0.93703835877239	0.977210490892393
Merged-chr10-81390017-4	chr10	81389911	81390111	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3053.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	5.02003191230557	4.91873021452316	4.91332088284558	5.13231069696769	5.1860136658991	4.93204651343544	5.24378064153069	5.23783802229765	0.28322973110463	0.359550426657368	0.665421323593206
Merged-chr16-94586483-4	chr16	94586353	94586553	+	918.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	15546.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	4.77920607296863	4.59579551688037	4.63526270882685	4.74156888754356	4.2024385529976	4.76886403936725	4.05207842980219	4.70654480586385	-0.512784982523459	0.2020244252612	0.504557774233929
Merged-chr16-44173646-4	chr16	44173524	44173724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029889, intron 1 of 7)	CpG	227.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	5.47473805228855	5.26892226459005	5.36482851574118	5.07355069627883	5.40553403854847	5.17750554231846	5.6649555658603	5.17436141731504	0.156720831925958	0.608924574577165	0.830813576385782
Merged-chr1-178187505-4	chr1	178187420	178187620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024282, exon 1 of 5)	5' UTR (NM_024282, exon 1 of 5)	103.0	NM_024282	78825.0	Mm.440132	NM_024282	ENSMUSG00000026502	Desi2	5830417C01Rik|DeSI-2|Fam152a|Pppde1	desumoylating isopeptidase 2	protein-coding	9.09918980926171	9.31399198834504	9.15953827745854	8.78199953435961	9.28944377937908	9.4092942987379	9.50379353517224	9.11494093946152	0.293592734045936	0.0914389296644329	0.330449409757548
Merged-chr5-28003982-4	chr5	28003865	28004065	+	928.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-67447.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	5.42828180397672	5.26812812329904	6.08837080340703	5.90934616280954	4.69230702219107	4.77041471365136	4.60872965272983	4.97533856727763	-1.78558050727942	4.12174462931709e-07	1.554751780446e-05
Merged-chr4-122886525-4	chr4	122886428	122886628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358036)	promoter-TSS (NM_001358036)	-452.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	6.61787253402534	6.36378221001451	6.41711135726023	6.36654941440143	6.70294109852754	6.81053816279112	6.8239792137812	6.81487281711645	0.502748023468906	0.013933636398849	0.0996867588262076
Merged-chr8-40851141-3	chr8	40851033	40851233	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11234.0	NM_007514	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	3.94072198368289	4.03512099283027	4.21071778557277	3.87917216816762	5.9010071124018	5.78763766845529	5.8026465621369	5.56324361641725	3.54649176652659	2.96825150110377e-23	1.54216915034354e-20
Merged-chr15-68239281-2	chr15	68239181	68239381	+	940.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_152182, intron 1 of 13)	intron (NR_152182, intron 1 of 13)	19575.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	2.42846026931722	2.36566797973311	2.42869616973584	2.33430539700833	2.5597165781833	2.8644285804971	2.74260747130671	2.69380988978408	1.76692897542844	0.00912547285797031	0.0738955668438531
Merged-chr4-147928594-6	chr4	147928475	147928675	+	850.8214109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011122, intron 5 of 18)	intron (NM_011122, intron 5 of 18)	8201.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	3.78185200047378	3.92143775332474	4.21708161527238	3.9007189635625	4.0529664022541	3.78193552498162	4.15639074664988	4.25454866531519	0.304180254044748	0.489072597581487	0.761571656414145
Merged-chr5-108671060-2	chr5	108670960	108671160	+	829.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_174870, exon 3 of 3)	3' UTR (NM_174870, exon 3 of 3)	3736.0	NM_001310692	231583.0	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	2.77629938584526	2.87873410379172	3.15316422264748	2.65747967610833	3.01930368323269	3.02459301817784	3.1925721664374	3.15130887388867	0.971195052696694	0.111868941471777	0.369641643428476
Merged-chr10-86827164-4	chr10	86827056	86827256	+	911.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175331, intron 12 of 13)	MIRb|SINE|MIR	48151.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	4.37357022989563	3.94280084977071	4.6322725133034	4.56345060323059	4.04285413168353	4.17526010026188	3.98037239783079	4.32988236275529	-0.671318094685812	0.121598101148811	0.386243714577393
Merged-chr3-107333658-4	chr3	107333572	107333772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045807)	promoter-TSS (NM_001045807)	-383.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	7.47441629592005	7.61915281504337	7.16616058747771	7.20647610082345	7.86734511735832	7.65295254106706	7.5811335124331	7.50778205927255	0.383290174431366	0.0522018171038622	0.237924898484716
Merged-chr6-65142855-3	chr6	65142744	65142944	+	859.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 1 of 5)	intron (NM_019455, intron 1 of 5)	1886.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	3.21228611493955	3.23087493434154	3.56218356337667	3.87447003895086	3.32082499750565	3.57087656561393	3.32794748763015	3.56010929536893	-0.218687745778695	0.701782962071619	0.879887873504074
Merged-chr1-173440933-1	chr1	173440833	173441033	+	662.0	f1_balb.idr	intron (NM_001013779, intron 2 of 8)	intron (NM_001013779, intron 2 of 8)	20329.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	2.40552460389944	2.6688061870752	2.33133216417516	2.35378286562479	2.49978881139115	2.71348597937058	2.59731609762557	2.60567540895635	0.845465928680662	0.223546305668483	0.531616133479568
Merged-chr14-45080014-4	chr14	45079917	45080117	+	983.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1a|LTR|Gypsy	91906.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	5.37066862867724	5.35473007307343	4.90208506035084	5.78186307451113	5.50283400258759	5.42194445747569	5.53963205422099	5.88266386560706	0.318122557482439	0.337603762154069	0.647367946830939
Merged-chr18-21718406-1	chr18	21718306	21718506	+	801.0	f0_balb.idr	Intergenic	L1MB7|LINE|L1	-66038.0	NM_001081403	225266.0	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	3.82256683995205	3.35668908520409	3.49624700957586	4.22833695715426	2.93397085498999	2.93527059754823	3.05044021983692	3.05841961572577	-3.25319102834472	5.4890846359614e-06	0.000161249506934831
Merged-chr3-28746319-4	chr3	28746214	28746414	+	917.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34963.0	NM_177586	208691.0	Mm.193670	NM_177586	ENSMUSG00000050192	Eif5a2	9630038B20|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding	4.9128664104541	5.13085609147344	4.72177770907314	5.1048861741935	4.91959283988298	4.89831644531739	5.1450197142783	4.6333920487006	-0.151524576871524	0.654611014073153	0.855659697629251
Merged-chr15-58020305-3	chr15	58020195	58020395	+	925.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13999.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	3.90878642603625	3.96698315423391	3.68768341264355	3.70257038185252	4.1747574127266	4.31001719614152	3.89305050677836	4.00511232133885	0.792086554236527	0.0693453361493974	0.281598249667307
Merged-chr2-4557229-4	chr2	4557126	4557326	+	756.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 11 of 23)	intron (NM_001177843, intron 11 of 23)	-2528.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	3.83268183609834	3.89303127325571	4.21431548512011	4.00652454762072	3.77683989142243	3.60657680350218	3.91317902630454	3.49301570025326	-0.838860358317059	0.0790573074709884	0.304244070129316
Merged-chr3-95624904-4	chr3	95624842	95625042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019561)	promoter-TSS (NM_019561)	-38.0	NM_019561	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	8.09047492063183	8.14987332255879	8.18434059095982	8.06307184012149	8.16561790475286	8.34400269439405	8.11560209188883	7.75893262856474	-0.0098227457422829	0.955947832992519	0.984358366957231
Merged-chr15-99651706-4	chr15	99651605	99651805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012025)	promoter-TSS (NM_012025)	-49.0	NM_001253809	26934.0	Mm.273804	NM_012025	ENSMUSG00000023015	Racgap1	AI227039|AI327394|Band25|GTPase|MgcRacGAP|gtl11|mKIAA1478	Rac GTPase-activating protein 1	protein-coding	6.95658214929219	6.88550699247671	6.24911585767114	6.24573794306281	6.76795911002227	6.68652254357857	6.38983308223928	6.43602766546555	-0.0523901330243885	0.844435835451821	0.941009934631134
Merged-chr14-102995385-4	chr14	102995288	102995488	+	995.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	-12751.0	NM_177715	239217.0	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	5.30653565607999	5.13630651591107	4.80143852351576	4.81222328718312	5.05635199066606	5.09628646624591	5.2528915843916	5.24690463168014	0.274444882398669	0.394606021476464	0.693682147756976
Merged-chr8-71382796-4	chr8	71382698	71382898	+	994.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010150)	promoter-TSS (NM_010150)	-846.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	5.23313562645579	5.42712131910592	5.29834494706001	4.81147861064032	5.90962869100048	5.93681692979245	5.20808894703424	5.197048819108	0.730920439875114	0.0356817918304087	0.187570565481808
Merged-chr2-30829603-4	chr2	30829511	30829711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1311.0	NM_133346	72323.0	Mm.27656	NM_133346	ENSMUSG00000039483	Asb6	2510004M11Rik|AA409356	ankyrin repeat and SOCS box-containing 6	protein-coding	5.17349326487199	5.62925335067344	5.55868414434736	4.88398022517964	5.40614783705782	5.51147151788581	5.58008601460139	5.39179643911438	0.250847567744483	0.436665883534206	0.725267689648046
Merged-chr5-23410306-4	chr5	23410130	23410330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24123.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	5.99355075871911	5.87205320440116	5.8435053880124	6.01628972550492	5.4220600410524	5.55743782261774	5.85850393711848	5.61408694167089	-0.5332518494216	0.0411961201408712	0.205343041702176
Merged-chr13-51733207-2	chr13	51733107	51733307	+	848.650024	f1_balb.idr|f1_c57bl6.idr	intron (NM_013660, intron 2 of 15)	B1_Mus1|SINE|Alu	60540.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	3.48891018619046	3.1592486393031	3.32551946987206	3.17818086902892	3.43289447741578	3.31564061319081	3.47478497102875	3.48736982359141	0.515246522832567	0.321207285083606	0.632926759819671
Merged-chr11-79878825-4	chr11	79878700	79878900	+	920.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	83587.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	3.72247967873637	4.23209195216466	4.00307171330547	4.04870590942211	4.25842974474472	4.02010557864859	4.40711861118906	4.09785889280803	0.481665183411576	0.2632061890075	0.575126732996618
Merged-chr16-96208588-4	chr16	96208492	96208692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015825, intron 2 of 7)	intron (NM_015825, intron 2 of 7)	8122.0	NM_015825	50795.0	Mm.28638	NM_015825	ENSMUSG00000040666	Sh3bgr	5430437A18Rik	SH3-binding domain glutamic acid-rich protein	protein-coding	6.3978891671494	6.55612374206025	6.58663586240453	7.42771460683735	6.10076947286655	6.17320269595067	6.9991637886801	6.25886989232629	-0.556110603825743	0.0875608677795328	0.322639002184259
Merged-chr4-129188974-4	chr4	129188856	129189056	+	913.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134151)	promoter-TSS (NM_134151)	586.0	NM_029036	74648.0	Mm.172064	NM_029036	ENSMUSG00000040928	S100pbp	4930429A08Rik|AI851343|S100pbpr	S100P binding protein	protein-coding	4.13407092528702	3.8310498032008	3.98791900526094	3.40451836230564	4.40643765247513	4.21484060676808	4.47267234697194	4.17750832833207	1.24839551445883	0.00672096748115308	0.0590825916192411
Merged-chr13-3766053-1	chr13	3765953	3766153	+	787.0	f0_balb.idr	Intergenic	Intergenic	38265.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	2.89820274122075	2.69297669488116	3.0847382641693	3.0718569182367	2.30177242550086	2.41008885334452	2.388607216633	2.53645315973437	-4.38726275631755	5.36980953537175e-05	0.00120383519029362
Merged-chr13-5888970-4	chr13	5888868	5889068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27479.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	6.16993333054005	6.10819921647634	6.1294434003428	6.59889643537252	6.34480650882188	6.19681901305295	6.27435651600039	6.48926949924839	0.0621875889897356	0.80184480597475	0.923559097579232
Merged-chr4-21727000-3	chr4	21726880	21727080	+	748.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290420)	promoter-TSS (NM_001290420)	-721.0	NM_001290422	51813.0	Mm.278584	NM_016746	ENSMUSG00000028252	Ccnc	AI451004|AU020987|CG1C	cyclin C	protein-coding	3.81955592050947	3.7789815285154	3.77351652438179	3.3206694185532	3.80689615759675	3.2963620198122	3.43887607338352	3.6726199473197	-0.328200006971804	0.543150494317084	0.794315192204876
Merged-chr7-3292959-4	chr7	3292880	3293080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001093766)	promoter-TSS (NM_001093766)	-48.0	NM_001093766	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	6.3366304516709	6.42926468420974	6.07986688080279	6.2050212795236	6.96434316921817	7.23481783559407	7.0876341185485	6.51429318338019	1.01591097484041	1.85580850126694e-05	0.000476659713434086
Merged-chr2-170158194-8	chr2	170158121	170158321	+	896.089294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15546.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	4.09606423592333	4.65825173178011	4.82009758210423	4.14662349227298	4.52854828146839	4.70210765097511	4.58640752858726	4.56622278390939	0.306906486377629	0.450199044035329	0.735206666255006
Merged-chr1-173419152-4	chr1	173419037	173419237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1467.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	7.02087152376582	7.47847027375601	6.86174323311337	7.33510084321784	7.86618448203266	8.03805874579604	7.95526585980726	7.86925813759984	0.952753471453968	2.16602018003093e-06	7.01433805252146e-05
Merged-chr6-89300037-3	chr6	89299886	89300086	+	919.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14261.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	3.77708703861138	3.58419932028944	3.39712022026261	3.85127934492469	3.49250515118001	3.79786559665564	3.44649205089072	3.62603128146279	-0.253993785917498	0.614817986387745	0.834117577275116
Merged-chr3-52267833-2	chr3	52267733	52267933	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019739)	promoter-TSS (NM_019739)	-504.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	4.24217326208647	4.26583987923906	4.86219917896735	4.19870577792255	4.20957371208491	4.37094625546804	4.17692307159854	4.28629859580544	-0.361688914531695	0.387927602131375	0.688726934413767
Merged-chr4-99186997-4	chr4	99186902	99187102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-6932.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	8.65693128815131	8.89583540937212	8.82456754880122	8.62106637315487	8.96164973995487	9.05347286187905	8.94883482960876	8.9762572053991	0.290581224575754	0.0490394650386636	0.22892448702357
Merged-chr1-189873481-1	chr1	189873381	189873581	+	800.0	f0_balb.idr	3' UTR (NM_008976, exon 19 of 19)	3' UTR (NM_008976, exon 19 of 19)	48810.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	3.14411313601598	3.18042774685159	3.54830681862811	3.54792712006967	2.73666573519582	2.91806932848543	2.72490794621631	3.14285109201497	-2.11855852217078	0.00189122273660931	0.0223799406764945
Merged-chr10-80748841-4	chr10	80748755	80748955	+	886.912476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6348.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	4.44108274131106	4.09278305374299	4.48222473619042	3.95183250789005	4.48973590996605	4.69180365937108	4.29297107994374	4.47927719339773	0.594679050321841	0.142945958616727	0.420976100831428
Merged-chr13-9113952-4	chr13	9113842	9114042	+	949.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	20061.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	5.1692006236573	4.67213746631339	5.20173623599119	5.43590440056238	5.20162941829803	5.21112253134244	5.57135979495766	4.92020562679124	0.157947884087125	0.653612493132779	0.855122647012202
Merged-chr13-102666956-4	chr13	102666852	102667052	+	927.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-26595.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	4.5368860637948	4.34260138737809	4.2272326948174	4.48169696209132	4.69987105956557	4.19402872477603	4.35007944660151	4.84626698410469	0.336401139324469	0.396451637311346	0.69519327480908
Merged-chr1-79786719-4	chr1	79786625	79786825	+	785.895813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10707.0	NM_001081210	69163.0	Mm.238455	NM_001081210	ENSMUSG00000026248	Mrpl44	1810030E18Rik|5730593H20Rik|AI463302	mitochondrial ribosomal protein L44	protein-coding	3.61540130097804	3.5886668681943	3.67200981842098	3.71890679767511	4.02966311855326	3.73299928589641	3.85818811194259	3.87262007030697	0.672626173612407	0.137135723209081	0.411824241716235
Merged-chr17-36044952-4	chr17	36044867	36045067	+	877.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034909, intron 1 of 2)	MLT1F1|LTR|ERVL-MaLR	2006.0	NM_001034909	547347.0	Mm.484641	NM_001034909	ENSMUSG00000073407	Gm6034	EG547347|H2-gs14-2	predicted gene 6034	protein-coding	3.99825080891471	3.98002122776357	3.70174804879149	3.40236379104884	4.08277796814975	3.76415826357503	3.93623933834093	3.58369704726544	0.220438358254263	0.662405157744928	0.860025750147184
Merged-chr9-102717678-4	chr9	102717609	102717809	+	867.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019764)	promoter-TSS (NM_019764)	-95.0	NM_019764	56332.0	Mm.21145	NM_019764	ENSMUSG00000032531	Amotl2	AW549739|C79691|Lccp|MASCOT|mKIAA0989	angiomotin-like 2	protein-coding	4.18386455608647	4.49816356087515	4.13350636587056	4.83825454162275	4.29099326601733	4.31089201197495	4.39305379235856	4.45143293449696	-0.250699706448472	0.553357072876321	0.800173960261692
Merged-chr7-24611326-4	chr7	24611226	24611426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102613)	promoter-TSS (NM_001102613)	-2.0	NM_001102613	232970.0	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	7.16916981491535	7.16508873337719	6.87008659999857	7.23351055938304	7.14220151539238	7.14235673867669	7.08929705838628	6.9734453204021	-0.0487694515778129	0.799806065283785	0.922665648246429
Merged-chr8-106528210-4	chr8	106528101	106528301	+	833.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007665, intron 2 of 15)	B4|SINE|B4	17349.0	NM_001037809	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	3.53278339519882	4.17816272289286	3.59492492384356	3.69215985416481	3.81426527952102	3.8298813618768	3.94359726104638	3.95874183406784	0.311150903518298	0.51884353221743	0.779745431679921
Merged-chr8-11174039-3	chr8	11173938	11174138	+	931.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138767.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	4.13124130197132	4.10832032206256	4.08767272675281	4.25469388286062	3.87757761688359	3.845495003613	3.92874681299745	3.83816448777823	-0.77176179706165	0.0689970676769537	0.28073295302263
Merged-chr3-103738431-4	chr3	103738333	103738533	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133859)	promoter-TSS (NM_133859)	-432.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	4.39182333668297	4.51005864285599	4.5655606835912	4.44453461417752	4.77757375753319	4.81489059282952	4.54452011564901	4.56261895721932	0.455277091513174	0.194550618473812	0.494939721660797
Merged-chr4-139615442-2	chr4	139615331	139615531	+	937.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_001205173, intron 8 of 8)	MTD|LTR|ERVL-MaLR	-7463.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	3.42319565983442	3.77445537418177	3.49202278973688	2.93899515888259	4.12475821178594	3.68184339011506	4.3296931422367	4.48119784401054	2.1762240557442	9.8549515392853e-05	0.00200705463695218
Merged-chr1-185238639-4	chr1	185238501	185238701	+	970.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 7 of 34)	intron (NM_001163754, intron 7 of 34)	-4325.0	NR_034044	100217449.0	Mm.429560	NR_034044	ENSMUSG00000077571	Snora36b	MBI-87	small nucleolar RNA, H/ACA box 36B	snoRNA	4.40922948207715	4.86054729922941	4.74551443795752	5.18424811392674	4.6180601756753	4.72143720109134	4.39081810227097	4.58563136867054	-0.564714057510841	0.142801576940981	0.420714960475251
Merged-chr16-45651685-4	chr16	45651585	45651785	+	979.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145389, intron 1 of 5)	MTD|LTR|ERVL-MaLR	2433.0	NM_145389	212998.0	Mm.97511	NM_145389	ENSMUSG00000033187	BC016579	-	cDNA sequence, BC016579	protein-coding	4.99865667492056	4.97622669144016	5.42100673683822	5.37708784378506	7.20318809223467	7.09755684546873	7.50177679672951	7.13733318070839	3.02493895530198	9.61307550510225e-28	8.8863519659438e-25
Merged-chr11-3289398-4	chr11	3289312	3289512	+	912.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045108, intron 1 of 5)	CpG	281.0	NR_045109	56218.0	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	3.99079223034716	3.9257166719799	4.13439662876811	4.17385116664695	4.16301571861011	4.06225352130814	3.81612922597918	4.37656800511204	0.143526751057914	0.739119770448454	0.897175752194117
Merged-chr3-59055014-3	chr3	59054898	59055098	+	787.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 4 of 43)	intron (NM_177855, intron 4 of 43)	46823.0	NM_173398	229323.0	Mm.123648	NM_173398	ENSMUSG00000050075	Gpr171	A630006E05|F730001G15Rik|H963	G protein-coupled receptor 171	protein-coding	3.15845175363383	3.25322883961554	3.62345238798942	3.6688376910122	2.70942435320782	2.91604482061695	3.01885389860818	3.38452114041745	-1.65045768454424	0.0158164548770539	0.108867560361069
Merged-chr4-139352490-4	chr4	139352371	139352571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039200)	promoter-TSS (NM_001039200)	105.0	NM_001290810	69902.0	Mm.27871	NM_023536	ENSMUSG00000028741	Mrto4	2610012O22Rik|Mg684|Mrt4	mRNA turnover 4, ribosome maturation factor	protein-coding	7.06648528879824	7.1935864712155	7.15791557121954	6.91087295285778	7.02804568440958	6.83416978471961	6.89687995625091	6.42110885911766	-0.359127626853554	0.100648609960499	0.34827746273108
Merged-chr17-27612187-4	chr17	27612092	27612292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019837, intron 1 of 4)	intron (NM_019837, intron 1 of 4)	10772.0	NM_001291046	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	5.12812620404834	5.10875881554843	5.16389160405011	5.25600070136219	5.71293717362517	5.37458573054474	5.49408399957421	5.71023694613758	0.730865151647902	0.00998304601570769	0.0788142946575459
Merged-chr4-35156313-4	chr4	35156224	35156424	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	1160.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	5.26079507288982	5.49384752307386	5.74756201563842	5.48973053839645	5.25441955334405	5.34080367375102	5.07061253869354	4.72613278958717	-0.697880977300896	0.0289025030428663	0.163353967662441
Merged-chr1-87857023-4	chr1	87856926	87857126	+	827.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177646, intron 1 of 29)	L1MB7|LINE|L1	-2727.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	4.40428665096323	4.95751652417236	4.53280637279721	4.72358709725535	4.33687031566408	4.28664761776821	4.47112637233337	4.44620568998724	-0.662468655584008	0.0810237318702934	0.308801603036102
Merged-chr17-35838329-4	chr17	35838229	35838429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011655)	promoter-TSS (NM_011655)	-28.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	7.44044631309754	7.43609620978325	7.05294768042617	7.08192902172939	7.37249500320143	7.27992002902993	7.39555256882111	7.1216921001546	0.053691495574681	0.787638876273832	0.917636852222575
Merged-chr1-39686041-3	chr1	39685940	39686140	+	883.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145660, intron 7 of 14)	intron (NM_001145660, intron 7 of 14)	-34858.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	3.38000301201774	3.40780405749464	3.32171125809193	3.67109572006478	3.39727983586095	3.43388722949086	3.24949020214202	3.58948324000889	-0.149929172440845	0.776489525781557	0.912932991254018
Merged-chr1-39478707-4	chr1	39478602	39478802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357522)	promoter-TSS (NM_001357522)	45.0	NM_018775	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	6.74186383157078	6.66084908249993	6.91613197475002	6.80339415538836	6.34972503984257	6.48166399358796	6.67995252882134	6.78035108134148	-0.297145733112133	0.168011833440219	0.459975933399029
Merged-chr10-62554827-2	chr10	62554727	62554927	+	968.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23630.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	2.93778070112693	2.89400938678117	2.99776841916465	2.7958680999879	3.29885786476527	2.8465286040067	2.80147939898471	2.87430462489059	0.338938006974505	0.588817026316349	0.819895283778149
Merged-chr9-62933158-4	chr9	62933035	62933235	+	870.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 2 of 13)	intron (NM_019663, intron 2 of 13)	47744.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	4.98181872944576	4.25212274912148	4.75680496843455	5.26121421582078	4.28845739791389	4.47447767171204	4.37137943268085	4.23953876597475	-1.17668876022986	0.00521874241459674	0.049038266181991
Merged-chr8-106415999-4	chr8	106415921	106416121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011764, intron 1 of 3)	intron (NM_011764, intron 1 of 3)	682.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	5.40928490540084	4.97822815143191	5.24703551477743	5.11486789018802	5.06955272104401	4.84977875766225	5.19169964327541	4.79535730543214	-0.375837444636222	0.245133519573017	0.556229359867632
Merged-chr11-95354785-2	chr11	95354685	95354885	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172543, intron 1 of 7)	intron (NM_172543, intron 1 of 7)	17767.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	3.3202680642432	3.28655861157589	3.14921854332126	2.95822561365285	3.35153625318105	2.98734235232683	3.19694002969839	3.37115658803493	0.234965983255687	0.681645257731507	0.869544209471145
Merged-chr6-90369520-4	chr6	90369421	90369621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030260)	promoter-TSS (NM_030260)	27.0	NM_030260	80292.0	Mm.100116	NM_030260	ENSMUSG00000034430	Zxdc	A930012H20|B930086F11Rik|BC003332	ZXD family zinc finger C	protein-coding	7.83043977927351	7.74860584705521	7.59205861418737	7.97400131436014	7.96271383212176	7.59426450784177	7.92203272331455	7.98178348788687	0.0994223419901537	0.587734870037119	0.819334771057997
Merged-chr2-163758364-3	chr2	163758259	163758459	+	932.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8120.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	5.14486279327452	4.49883797881106	5.57184597399156	5.55139278617342	4.09718023477855	4.13527000323002	4.22548087508122	4.34858767621702	-2.32018449544959	1.01932895749413e-07	4.35764659852701e-06
Merged-chr6-39055271-4	chr6	39055156	39055356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 9 of 12)	intron (NM_011539, intron 9 of 12)	12330.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	5.2106702986666	5.62399853830491	5.61904225451746	4.86882040270294	5.2381978958019	5.3867388260453	5.05185388503589	5.07301118060579	-0.293642099099288	0.392764451162913	0.692117979418531
Merged-chr13-23519091-4	chr13	23518991	23519191	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Gln-CAA|tRNA|tRNA	-11953.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	4.62323453743549	4.44876084226163	3.94307068896637	4.16074602841452	4.64340952518353	4.60551579753748	4.19335963503396	4.20893321309043	0.283549476503058	0.507319251747725	0.772710503440438
Merged-chr12-52504781-5	chr12	52504579	52504779	+	779.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11398.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	3.79349522177204	3.60699689515941	4.08881494211218	3.84964931178182	3.98951603929794	3.96949017566941	4.19414058232687	4.0416447248707	0.566799826074668	0.197218977861615	0.498538590283822
Merged-chr18-82815890-4	chr18	82815777	82815977	+	843.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40020.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	3.38649466091708	3.68149074440211	3.83605009216222	3.65332810341129	3.4778581512402	3.85734351864109	3.99400821760573	3.7351907566215	0.374932798334069	0.44802182432	0.73332468018769
Merged-chr4-131916608-4	chr4	131916495	131916695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102394, intron 1 of 2)	intron (NR_102394, intron 1 of 2)	3434.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	5.99737884210628	6.00968199584934	5.60731362636052	6.08545099499386	5.49040786273508	5.14297077037999	5.49599464574542	5.63002199263313	-0.8203245874034	0.00359033290058864	0.0367918666183413
Merged-chr10-30789779-4	chr10	30789714	30789914	+	765.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	13512.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	2.98908991837356	3.08781175053622	2.98946016947234	2.7175869500723	3.06022666201175	3.1605007907839	3.03810049842504	2.92496982062334	0.442847042984687	0.457896179919128	0.740892277749167
Merged-chr16-50366784-4	chr16	50366660	50366860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	65629.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	5.0875339428566	5.09176284484847	5.28006817540856	5.45558036222255	5.55892024901596	5.22917134852257	4.95694149768579	5.01416648989106	-0.043004756613037	0.896256465950161	0.961046277451873
Merged-chr1-170371502-4	chr1	170371365	170371565	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 4 of 9)	intron (NM_001109985, intron 4 of 9)	62604.0	NM_001039593	76925.0	Mm.33631	NM_001039593	ENSMUSG00000042800	Spata46	1700015E13Rik	spermatogenesis associated 46	protein-coding	4.75786681457785	4.75664083076245	5.04460981211604	4.95494506302957	5.05978782850668	4.9727357617977	4.98780382280174	4.87027549505322	0.177410158189228	0.578923880232573	0.815096882030943
Merged-chr2-52942935-3	chr2	52942858	52943058	+	829.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	85090.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.11100316841419	3.1224256756442	3.28885374379474	3.15971961098784	3.28926496194055	3.34370761440405	3.38044727589146	3.17157824361058	0.478978100474147	0.367453067472128	0.671879929346449
Merged-chr8-72646588-3	chr8	72646479	72646679	+	893.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176940)	promoter-TSS (NM_176940)	-132.0	NM_176940	319555.0	Mm.390076	NM_176940	ENSMUSG00000048148	Nwd1	A230063L24Rik	NACHT and WD repeat domain containing 1	protein-coding	3.22026313994339	3.45631125968806	3.74383775918261	3.24035056765406	3.80308001751409	3.59612851614747	3.57670730868354	3.91960449419248	0.99095412301582	0.0544437178267696	0.243534247246073
Merged-chr2-120652998-4	chr2	120652903	120653103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43408.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	6.31076512349051	5.95611886202622	6.81170626061599	6.71211782707452	6.44690167179425	6.30522187832107	6.35362130268942	6.84486141557251	0.0134712730184422	0.961196520880077	0.986114717027689
Merged-chr12-91589123-4	chr12	91589008	91589208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175335, intron 1 of 8)	intron (NM_175335, intron 1 of 8)	541.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	4.68479715226558	4.89873061516461	4.97996119500502	4.89350459653595	5.01568910400874	4.90093433661089	4.74352631899305	4.80087716513634	0.010817419971309	0.973613265330215	0.990570637473211
Merged-chr14-18731220-3	chr14	18731120	18731320	+	858.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360327, intron 3 of 5)	intron (NM_001360327, intron 3 of 5)	162193.0	NM_001360328	218793.0	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding	3.93430475298989	3.68894241964495	3.78980277679483	3.56490583042985	3.58974750726392	3.91055479105074	3.77400697499993	3.97728499853647	0.221342730958983	0.63695253686368	0.846506358316041
Merged-chr18-44828923-4	chr18	44828810	44829010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163013, exon 1 of 30)	exon (NM_001163013, exon 1 of 30)	245.0	NM_001163013	240255.0	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	7.1188573212962	7.14333096110775	7.37622134153724	7.1930103636022	7.22835555707643	6.94549762964845	7.36807571533769	7.27071793331178	0.00765634208035271	0.968251047384287	0.988694268692349
Merged-chr1-91955068-4	chr1	91954963	91955163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 22 of 26)	intron (NM_207225, intron 22 of 26)	153602.0	NM_007855	13345.0	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	5.58973927831419	5.57361074694805	5.84652881371517	6.16225400493856	6.05539822332969	5.79430201735981	5.69585395921287	5.97453779066513	0.0906786201668491	0.750594658876151	0.901855648088396
Merged-chr14-79509116-4	chr14	79509008	79509208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	intron (NM_007920, intron 1 of 8)	-6566.0	NM_001286412	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	5.89077583579514	6.04943887422085	6.4162353069221	6.40029475218318	5.92111282162976	5.99512523673392	5.95416907553149	5.95785502864184	-0.412086047678695	0.102487142450417	0.351644491041765
Merged-chr2-167694283-19	chr2	167694363	167694563	+	867.5912480000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015500, intron 1 of 1)	intron (NR_015500, intron 1 of 1)	3286.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	4.81670454415343	3.99700988639366	3.96141055225306	4.07689150033673	4.32029665091147	4.29337366847567	3.94550460782194	4.20988595121648	-0.136184506376228	0.77043972673527	0.910205246466887
Merged-chr17-28327722-3	chr17	28327665	28327865	+	945.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011287)	promoter-TSS (NM_011287)	-706.0	NM_011287	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	3.508471759193	3.22781520861251	3.82689529285596	3.28342102476891	3.39355555486273	3.39783871045167	3.27197049615508	3.15347776491902	-0.577163754711185	0.3038299373582	0.616555796305716
Merged-chr13-88459693-4	chr13	88459595	88459795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Zaphod|DNA|hAT-Tip100	-361777.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	7.50892046077092	7.37582510744941	7.16885572612629	7.52392420896274	7.63791795281761	7.38150088840761	7.43650819077899	7.39141485038528	0.0847336981559018	0.650109629367351	0.85304268164913
Merged-chr2-91921977-4	chr2	91921899	91922099	+	920.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007699)	promoter-TSS (NM_007699)	-190.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	4.31676091548855	4.59713469020821	4.78034942854202	4.08637690599516	4.73419684868305	4.49884660093839	4.85793727541098	5.08811376621769	0.763897044905561	0.0540254516272934	0.242661868635862
Merged-chr14-52267536-3	chr14	52267443	52267643	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172601, intron 5 of 7)	L1MB3|LINE|L1	-11603.0	NM_023434	268741.0	Mm.246237	NM_023434	ENSMUSG00000016831	Tox4	5730589K01Rik|A630040M18|AA410149|LCP1	TOX high mobility group box family member 4	protein-coding	3.38380823657337	3.26424752188169	3.3842427567298	2.44642557020302	5.02592478373166	5.19378409968261	5.36963755483783	5.14492756366831	8.96316971789433	1.25770878110229e-21	5.11556876171884e-19
Merged-chr5-38483712-4	chr5	38483619	38483819	+	910.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001012363)	promoter-TSS (NM_001012363)	-334.0	NM_001012363	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	4.52806264512611	4.52115340309906	4.93367231944631	4.5436535803984	4.45292557596231	4.74604787457394	4.94006293645521	4.60962991324427	0.122460315397002	0.738949678454788	0.897069647209902
Merged-chr13-41097853-4	chr13	41097778	41097978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12110.0	NM_008104	107889.0	Mm.1399	NM_008104	ENSMUSG00000021362	Gcm2	Gcm-rs1|Gcm1|Gcm1-rs2	glial cells missing homolog 2	protein-coding	5.83516002834514	5.82217617917244	6.18620374746676	6.08686418757129	5.82983275844977	5.91357216095702	5.68267342974006	5.59823639304074	-0.376028718556331	0.144837882799695	0.424036712956412
Merged-chr14-19416647-6	chr14	19416559	19416759	+	970.507935	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	185928.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	5.19405880681224	4.57522070304745	5.08311106952425	5.97166578669316	5.73712252090814	5.81980690317473	5.51047869272502	6.2937377627399	0.954907175361113	0.115661452814451	0.376329506906353
Merged-chr8-41044076-4	chr8	41043971	41044171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 5 of 13)	L1MB1|LINE|L1	-2140.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	6.46615016471863	6.3254087620301	7.09216731500356	6.51113613676352	6.15165411791873	6.62661191617185	6.21425105999888	6.20095089248524	-0.472645245651822	0.075077821360544	0.295671364757229
Merged-chr5-135614794-4	chr5	135614610	135614810	+	919.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17944.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	4.45884996739338	4.08543430608983	4.49529855787591	4.31484052130916	3.99383736242587	4.24800047565891	4.10582828216033	3.9688960577295	-0.679323732501584	0.100457754536764	0.347921492320569
Merged-chr15-8663928-4	chr15	8663823	8664023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 3 of 9)	L3|LINE|CR1	46884.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	5.43207169052289	5.01952401356276	5.0935468791775	5.35107936986239	5.62738819428256	5.23489679460579	5.29339442475862	5.28618778854306	0.253542989273221	0.407558595461706	0.70380769632612
Merged-chr3-104092957-4	chr3	104092855	104093055	+	916.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133853, intron 3 of 21)	intron (NM_133853, intron 3 of 21)	-124639.0	NR_030676	100125931.0	Mm.400392	NR_030676	ENSMUSG00000089998	Phtf1os	A130049A11Rik	putative homeodomain transcription factor 1, opposite strand	ncRNA	5.40469660597399	5.7379796179889	5.87456261033635	5.5623171017327	4.72040590047338	4.88902671015863	4.7697093943216	4.38986061232519	-1.81263812266035	6.76804544092453e-08	3.01089191524729e-06
Merged-chr14-25458561-5	chr14	25458459	25458659	+	998.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310666)	promoter-TSS (NM_001310666)	-626.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	3.21740691561075	3.19542374278662	3.1605346324761	3.10318768829583	2.92411142112297	3.38622046319125	3.02760979107878	3.09902864765952	-0.208070965117165	0.716480057394203	0.8866074790069
Merged-chr17-78315899-4	chr17	78315818	78316018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 7 of 16)	intron (NM_015800, intron 7 of 16)	102234.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	5.4860814560166	5.04052939562632	5.83499615166787	5.96809482084557	5.04243062812783	4.6870636731245	5.34816507636647	5.37145650596881	-0.884537837380259	0.0153715025535769	0.106712979641183
Merged-chr10-77517195-4	chr10	77517092	77517292	+	983.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1379.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	5.13349459796178	4.98457256495385	4.73461779886864	5.01896495358038	5.12685661319584	5.10648898880949	4.97887569271679	5.22097865528896	0.253402910500382	0.416146181818096	0.710072021761014
Merged-chr9-85375279-1	chr9	85375179	85375379	+	641.666687	f0_balb.idr	Intergenic	Intergenic	-48129.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	3.46850761656298	3.6197422776663	3.67962438597732	3.54361031195044	3.56386920861902	3.46171663311659	3.45620114275766	3.62816620578294	-0.152612667998951	0.753061930109241	0.902733716697758
Merged-chr13-38296830-3	chr13	38296732	38296932	+	937.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48884.0	NM_007556	12161.0	Mm.385759	NM_007556	ENSMUSG00000039004	Bmp6	D13Wsu115e|Vgr1	bone morphogenetic protein 6	protein-coding	3.46581097112024	3.76208437693712	3.53239813322826	3.32006697925706	4.1808658816837	4.04768094181494	4.1242388998058	4.18129840341339	1.80301668105294	7.32107413054485e-05	0.00155992970181272
Merged-chr19-55887983-4	chr19	55887893	55888093	+	815.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-7328.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.62820355463824	3.55371738880136	3.83938026186577	3.95405867526559	3.88784831561244	3.90902408148123	3.72340186193236	3.73623526743421	0.150239951784352	0.749137196821252	0.901210731012369
Merged-chr15-99771977-3	chr15	99771875	99772075	+	721.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028015, intron 1 of 9)	CpG	540.0	NM_028015	71949.0	Mm.390821	NM_028015	ENSMUSG00000023021	Cers5	2310081H14Rik|AU045339|AW544927|Lass5|Trh4	ceramide synthase 5	protein-coding	3.66879744138987	3.2359892522172	3.76105380476352	3.35437007298723	3.42081137854609	3.39754199945963	3.33429506710268	3.56832690272723	-0.270791269650173	0.611228139371833	0.832251855180034
Merged-chr16-77444209-4	chr16	77444117	77444317	+	813.891663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015543, intron 2 of 4)	intron (NR_015543, intron 2 of 4)	114889.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	4.19367672227476	4.35983240336683	4.14119676877494	4.50751521699702	4.64832410905582	4.56235495816873	4.81346782515764	4.70148504867477	0.792737384515875	0.0361058785972274	0.188871928615569
Merged-chr1-57377605-4	chr1	57377499	57377699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037999)	promoter-TSS (NR_037999)	-21.0	NM_028546	73467.0	Mm.263673	NM_028546	ENSMUSG00000038323	1700066M21Rik	AI428479	RIKEN cDNA 1700066M21 gene	protein-coding	7.76279372674267	7.74114018843753	7.4634694521966	7.91094799931191	7.79251552735199	7.76456736185681	7.96790145437926	7.74300841951984	0.105146135017261	0.559098800592211	0.803620555468447
Merged-chr4-41569671-4	chr4	41569600	41569800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159583)	promoter-TSS (NM_001159583)	-94.0	NM_175138	68922.0	Mm.79127	NM_175138	ENSMUSG00000061322	Dnaic1	1110066F04Rik|BB124644|Dnai1|b2b1526Clo	dynein, axonemal, intermediate chain 1	protein-coding	8.73657883261552	8.6202677343798	8.55368353700251	8.43913541012154	9.17557016018524	9.26851940162234	9.18117783589075	8.97303223711084	0.706057757352859	4.17378619931349e-06	0.000126419543779121
Merged-chr5-135778518-4	chr5	135778403	135778603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008617)	promoter-TSS (NM_008617)	-118.0	NM_001289557	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	8.67454406678693	9.01166560274525	8.4168031800082	8.35966654960945	8.62392072033854	8.84913096387407	8.50402128083617	8.58969030900739	0.00822618499857573	0.96627874871181	0.988064836334535
Merged-chr15-27702404-4	chr15	27702295	27702495	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20853.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	5.54132283403684	4.91728058284189	5.4423058722973	5.50509488264643	5.05430188839559	4.9957867476467	5.02365785866462	5.11372786609512	-0.613251270558544	0.0549268083473815	0.244826557164398
Merged-chr17-13940632-4	chr17	13940494	13940694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7779.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	6.3820790671507	5.99658949515522	6.07815322370814	6.70269112672372	5.98569410044561	6.04626535053591	6.2451221786375	6.21633768558595	-0.327406268730701	0.221968145082175	0.530047563717821
Merged-chr2-160383053-3	chr2	160382956	160383156	+	682.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15991.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	3.0107577213233	3.08816249027264	2.87124471303934	3.44776998367018	3.33772386444192	3.24743017293405	3.18479999817248	3.30508753560632	0.487983346588024	0.426329714130131	0.717800234697432
Merged-chr2-34372807-4	chr2	34372720	34372920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016768)	promoter-TSS (NM_016768)	-775.0	NM_016768	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	7.26456953125768	7.44587432054529	7.35124809329402	7.31695228170168	7.33906390986999	7.52849909446552	7.61503309617076	7.72587320375934	0.277246574245578	0.128478294562208	0.39883649813705
Merged-chr18-56819996-4	chr18	56819903	56820103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177115, intron 1 of 4)	intron (NM_177115, intron 1 of 4)	105545.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	5.68151537873376	6.21701021636662	5.92549612814212	5.74203840447511	5.82774267951881	6.00901390243221	5.93841797559226	5.56676757956864	-0.0972238210777419	0.721548489947951	0.888783829001335
Merged-chr17-26781533-2	chr17	26781433	26781633	+	842.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_172149, intron 1 of 5)	intron (NM_172149, intron 1 of 5)	454.0	NM_172149	224630.0	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	3.326282272992	3.5820821250524	3.43425667613715	3.02158889137936	3.23333339070685	3.2585334493834	3.19800058876785	3.2078442547139	-0.460358411343031	0.417483326266278	0.711296288222139
Merged-chr7-139126065-3	chr7	139125967	139126167	+	670.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021302, intron 2 of 11)	intron (NM_021302, intron 2 of 11)	40066.0	NM_011993	26757.0	Mm.250414	NM_011993	ENSMUSG00000025478	Dpysl4	AI173505|CRMP-3|Crmp3|DPY4|Drp-4|Ulip4	dihydropyrimidinase-like 4	protein-coding	3.40819602122989	3.08736043488112	3.20305418951316	3.16786395066814	2.94929718188844	2.9966971905942	2.94880132581582	3.20129116208403	-0.781349042816929	0.180208543737739	0.47655907024478
Merged-chr19-29501189-5	chr19	29501048	29501248	+	850.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	20839.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	3.42411794588722	3.41379112832404	3.5949970287116	3.49643111212542	3.52165497747314	3.53971284372036	3.77498749623324	3.83428723382816	0.596770674609669	0.218485451342383	0.525781862908224
Merged-chr1-134414705-4	chr1	134414589	134414789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306069)	promoter-TSS (NM_001306069)	-689.0	NM_028320	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	5.65237547946572	5.43382316855147	5.40705004148393	6.00130937599623	5.78532575769296	5.2832471667513	5.15123566228681	5.67395580904776	-0.258565041256433	0.424610927093069	0.716329663906844
Merged-chr5-124353761-5	chr5	124353713	124353913	+	855.2899779999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013812, intron 1 of 3)	CpG	815.0	NM_013812	13445.0	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	4.26231653807602	4.55752677518898	4.40053693993936	4.1266380407715	4.58417341157984	4.53043753246679	4.33692296123403	4.70497155505453	0.488893298298683	0.200411647567543	0.502485838102051
Merged-chr9-111579739-4	chr9	111579658	111579858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016853, intron 8 of 10)	B4|SINE|B4	110590.0	NM_016853	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	6.47389346579273	6.20107280791241	6.85010306092735	6.62193886849844	6.63982819722737	6.75221256040857	6.6790194116755	6.80575595391953	0.229752155926445	0.311111765027004	0.623195371274192
Merged-chr2-27704045-3	chr2	27703971	27704171	+	677.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-5221.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	3.13440244731744	2.92175503989359	3.1889380324134	3.30176408924311	2.95923029302812	2.92940382630212	2.81594882627222	3.01764823605377	-0.917871880524957	0.130844515601311	0.402653773280836
Merged-chr15-77874474-4	chr15	77874378	77874578	+	901.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32303.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	4.27393943826513	3.80181746125777	4.23298876717524	3.96174842294834	4.25804266408507	3.96191361455837	3.9337893228728	4.35106734913987	0.184830699403043	0.673904818407262	0.865892937693567
Merged-chr13-107676996-4	chr13	107676906	107677106	+	915.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10391.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	4.43464366879513	4.64587452358654	4.3942053459691	4.10022742020753	4.74484135981716	4.1873613514335	4.33224315770864	4.00960858769545	-0.0891474055387165	0.84002269821397	0.939166584762349
Merged-chr19-32912111-3	chr19	32912027	32912227	+	851.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR31C_MM|LTR|ERVK	154550.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	3.45729844306041	3.46030152246926	3.30776479590153	2.85403272752473	4.43359562816654	4.26191712283335	4.34697648896866	4.62965785993667	3.67548531121491	2.01730937576533e-12	2.04544250794303e-10
Merged-chr11-61750249-2	chr11	61750149	61750349	+	740.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_144806, intron 5 of 11)	intron (NM_144806, intron 5 of 11)	11839.0	NM_144806	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	3.18916001060398	3.1383830674262	3.18954550299636	3.61331346152032	3.35963025132416	3.10292610994107	2.98674669307969	3.45811651089241	-0.239713110403064	0.691142504806509	0.874342018894229
Merged-chr3-32737523-1	chr3	32737423	32737623	+	546.0	f0_balb.idr	promoter-TSS (NM_029017)	promoter-TSS (NM_029017)	460.0	NM_025316	66046.0	Mm.28058	NM_025316	ENSMUSG00000027673	Ndufb5	0610007D05Rik|AU015782|CI-SGDH|SGDH	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5	protein-coding	3.60348999390019	3.79926324318974	4.38108927546888	3.86484458871152	4.29286264640563	3.96774037581156	4.03224719178359	4.22367013511243	0.525804742346419	0.260965393011939	0.572903670517743
Merged-chr10-80406803-4	chr10	80406669	80406869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025650)	promoter-TSS (NM_025650)	52.0	NM_025650	66594.0	Mm.379119	NM_025650	ENSMUSG00000020163	Uqcr11	0710008D09Rik|AL022707|Uqcr	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding	6.30485101482075	6.31257429406367	6.30596982436822	5.67015445377938	6.05955088671345	6.0260900887237	6.06657654132923	5.96358262392393	-0.197791562496458	0.465093415943704	0.745723070156486
Merged-chr17-35001946-5	chr17	35001829	35002029	+	936.2999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011690, intron 2 of 29)	intron (NM_011690, intron 2 of 29)	1022.0	NM_011690	22321.0	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	3.13112755351596	2.97750328335365	3.06977048109985	3.29178841087268	3.40778061658331	3.24113025294251	3.12056415000565	3.18878489182686	0.43601265470867	0.441737150384944	0.72861833833751
Merged-chr16-74411669-3	chr16	74411574	74411774	+	735.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175549, exon 1 of 28)	5' UTR (NM_175549, exon 1 of 28)	151.0	NM_001358494	268902.0	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	3.14432464872699	2.8245546692957	3.04106614871263	3.01425800414172	2.54142103872656	2.84448403017539	2.58701372638514	2.73612100018989	-1.65355524988709	0.0158598463138925	0.109037561397713
Merged-chr19-60962829-2	chr19	60962724	60962924	+	677.25	f0_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	MTEb|LTR|ERVL-MaLR	73075.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	3.57238989850837	3.18925442502931	3.7132800018008	3.5164962831453	3.17843269140295	3.53049589309661	3.34509855150924	3.16799730438358	-0.701823377199651	0.204044034673128	0.507244798195929
Merged-chr2-91954008-3	chr2	91953841	91954041	+	911.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138306, intron 1 of 30)	intron (NM_138306, intron 1 of 30)	-3593.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	3.78867093944264	3.67881840660162	3.69144647061179	3.67127781220291	3.50287060813852	3.58546119200471	3.39707873878873	3.78693445795599	-0.419426217019229	0.385267918430165	0.686692566479463
Merged-chr4-149955145-4	chr4	149955026	149955226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029035)	promoter-TSS (NM_029035)	-120.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	8.19990684170827	8.41078153436296	8.25951210410316	7.74296349703469	8.29255588322028	8.40847002349728	8.01752271725294	8.35777350326756	0.137808585205562	0.48983373686372	0.761966459176932
Merged-chr5-138195178-4	chr5	138195048	138195248	+	981.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177878, exon 1 of 1)	exon (NM_177878, exon 1 of 1)	834.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	4.74408310805994	5.05078878975732	4.74486494189586	4.31915386172251	4.65645350293004	4.48996626857296	4.79359637774203	4.7041442806162	-0.132272674248281	0.729316097005174	0.892556704127014
Merged-chr15-80582754-4	chr15	80582654	80582854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289442, intron 1 of 7)	L3|LINE|CR1	10157.0	NM_001289442	17444.0	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	5.39261792114321	5.85799155897683	5.45668089929943	5.71098725914304	5.72526042633938	5.88325718539641	5.57399011093849	6.28128156573204	0.429326265864988	0.145539386551757	0.42515587274758
Merged-chr7-101302022-4	chr7	101301902	101302102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111111)	promoter-TSS (NM_001111111)	86.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	6.65680747696324	6.84776700206409	6.85828365770613	6.3429115040782	6.53970476933912	7.04726416559873	6.83653572893699	6.77150331614471	0.17612366817625	0.454133317715275	0.737991265534018
Merged-chr14-54712175-4	chr14	54712075	54712275	+	747.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207131)	promoter-TSS (NM_207131)	-1.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	3.84534591095555	3.78588287536962	4.03541042326887	3.7951334276178	3.73090913514023	4.11398084118958	3.54981748094321	4.03285468603667	0.0191471875891799	0.967327562184631	0.988506166892638
Merged-chr7-141638835-2	chr7	141638735	141638935	+	938.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330001, intron 31 of 33)	intron (NM_001330001, intron 31 of 33)	16484.0	NM_001330001	353328.0	Mm.246621	NM_181729	ENSMUSG00000048191	Muc6	-	mucin 6, gastric	protein-coding	3.39301637062435	3.75218122881727	3.33576803054212	3.08784491896943	3.26117603202671	3.56550990551465	3.13595700542945	3.44676838196495	-0.176669335071465	0.757702768566857	0.904815773586341
Merged-chr14-77783434-3	chr14	77783338	77783538	+	591.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15530.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	3.923429011977	3.44075546053722	3.62386310403523	3.2428384999974	3.7884939227205	3.7993575184707	3.90600728358603	3.82919401678241	0.80359393081149	0.109764224791763	0.365875609087427
Merged-chr5-134519984-2	chr5	134519909	134520109	+	922.5833130000001	f0_balb.idr|f0_c57.idr	intron (NM_001039162, intron 3 of 15)	MTD|LTR|ERVL-MaLR	32425.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	5.0834597921257	4.91767991032703	4.86658627716982	4.99644575235295	4.88351894182493	5.49674951343271	5.35535590923048	5.45448225244941	0.639283434295228	0.0494925113773636	0.230220067136934
Merged-chr6-125279951-4	chr6	125279857	125280057	+	966.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009446, intron 4 of 4)	intron (NM_009446, intron 4 of 4)	6124.0	NM_009446	22144.0	Mm.270295	NM_009446	ENSMUSG00000067702	Tuba3a	AI528779|M[a]3|Tuba3	tubulin, alpha 3A	protein-coding	4.52340400375078	4.92213777244712	4.42374498339058	4.46893990964447	5.48618648328695	4.61090568487399	5.47144630781224	5.37764213853458	1.34686153534607	0.000346729929719687	0.00570353961622206
Merged-chr7-139979151-4	chr7	139979047	139979247	+	891.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347613)	promoter-TSS (NM_001347613)	-392.0	NM_001347613	381933.0	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	4.70487650829907	4.36099317221053	4.80451000809825	4.72859360264185	3.95816720328224	4.17441092137159	4.2394919595334	4.47807016952098	-1.04646615343051	0.00953861779100652	0.0762864354770846
Merged-chr8-85119706-2	chr8	85119595	85119795	+	828.375	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_001357366)	promoter-TSS (NM_001357366)	-4.0	NM_001357366	244556.0	Mm.334682	NM_001037745	ENSMUSG00000074194	Zfp791	EG244556	zinc finger protein 791	protein-coding	3.666109069198	3.81965890479381	3.7681188344753	3.54589569779656	3.52824801114703	3.48648992765759	3.92979238738166	3.66456405535141	-0.107963625767839	0.824720503228092	0.932767354677478
Merged-chr15-99817503-4	chr15	99817394	99817594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 4 of 10)	CT-rich|Low_complexity|Low_complexity	2655.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	5.60251888798493	5.57080910974841	5.19187806988922	5.07887890205917	6.14345513535341	5.93163158148305	5.8628488908361	6.01201324407407	1.05538002693311	0.000159615215367162	0.0030104004808212
Merged-chr9-47531778-2	chr9	47531678	47531878	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	CpG	1426.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	3.11162205261252	2.8441183691881	2.86760453898019	2.91578592106712	3.15185470320181	3.04115312815879	3.04365829660974	3.05352815241602	0.583581289516823	0.310946104461515	0.623003793544621
Merged-chr5-140845011-3	chr5	140844902	140845102	+	674.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14571.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	3.71180981467275	3.50132922300648	3.23475199817179	3.63663971301386	2.65491264157719	2.94530015578611	2.74722073262562	2.83213404532925	-3.93624661072889	4.33675173410602e-06	0.000130743605117295
Merged-chr7-89405150-3	chr7	89405069	89405269	+	939.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360746)	promoter-TSS (NM_001360746)	803.0	NM_008055	14366.0	Mm.86755	NM_008055	ENSMUSG00000049791	Fzd4	Fz4	frizzled class receptor 4	protein-coding	3.38394526678376	3.63697397914962	3.60695391416684	3.71363220645759	3.25825602503387	3.22840980747955	3.48681491516963	3.8370352890767	-0.398715782439545	0.462941410652705	0.744418991728203
Merged-chr5-72822622-3	chr5	72822522	72822722	+	928.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	45826.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	3.67080905309758	3.15391446788379	3.43481202433274	3.45058948307973	3.05728630452719	3.5516791680479	2.9988745904389	2.93289064177329	-1.04852011818641	0.0898668346432259	0.327377625419426
Merged-chr19-40640604-1	chr19	40640504	40640704	+	776.0	f1_balb.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-19166.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	3.08114143557743	3.17533760649899	3.08151444302194	3.05607906960939	3.14487278401593	2.99312572196515	3.12890025135268	3.24886090553217	0.145092613076706	0.793804353156333	0.92022175040272
Merged-chr2-157561365-4	chr2	157561250	157561450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010923, intron 2 of 2)	intron (NM_010923, intron 2 of 2)	1272.0	NM_180960	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	5.77976692634998	5.89897556754119	5.83128427866512	6.00179939904938	5.72625627340432	5.57728406249162	6.5950795662578	6.44148486636204	0.424133404847447	0.17602870755864	0.470982497286638
Merged-chr4-129032862-4	chr4	129032771	129032971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25400.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	7.11011099216937	7.61466628459818	6.88105103242692	6.36562147848158	7.23755288477038	7.45219715155408	7.14347478337671	6.91756843736149	0.183035567717705	0.519343242855961	0.780012083964476
Merged-chr11-96413989-1	chr11	96413889	96414089	+	1000.0	f0_balb.idr	Intergenic	Intergenic	48231.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	3.3554294994446	4.21785385538935	3.91598197307824	3.87150590709059	2.86673883077612	3.11344898242931	3.14175099462939	3.41595273775271	-2.75541067308133	3.94164604929761e-05	0.000919876800468705
Merged-chr5-99571165-4	chr5	99571065	99571265	+	985.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	157895.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	4.82848855072222	4.72198341406027	4.57184891465318	5.13823004670758	5.11836358337889	5.11518719151116	5.20142743880576	5.19519868126163	0.576357227941929	0.0894232238369232	0.326446591931909
Merged-chr3-105709707-4	chr3	105709608	105709808	+	930.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163356, intron 1 of 1)	intron (NM_001163356, intron 1 of 1)	4250.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	4.53872892752009	4.87888503496263	4.62277786504774	4.52527234033772	4.87706098744557	4.7142191883409	4.56089602554117	4.69794221069623	0.172017232938655	0.624883726152923	0.839659374707287
Merged-chr9-120591664-4	chr9	120591568	120591768	+	730.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	14337.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	3.92996994097042	3.85450557093375	3.78063881892332	3.58836232920189	3.99696489856131	3.72936908041754	4.12707234621751	3.72450966591	0.36625597513548	0.42683864172303	0.71819841806027
Merged-chr4-53154988-4	chr4	53154884	53155084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	4911.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	5.86806741254362	5.94413468199208	5.69043151650995	5.38404517974055	5.07453713964517	5.44516237300911	5.39689699250836	5.35962430237155	-0.711712022682164	0.0188249195519081	0.122828760544987
Merged-chr18-75740771-4	chr18	75740667	75740867	+	842.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43071.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	4.07367112339782	4.06859552148566	3.87334754708853	4.20316089863531	4.29182508751508	3.87932107104852	3.96136760298228	4.11742437288509	0.0324613971412193	0.940133793000496	0.978444602467866
Merged-chr19-45544331-4	chr19	45544260	45544460	+	825.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16204.0	NM_001330506	56626.0	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	3.87863621936134	4.04699784350488	3.82723101850098	3.72585321267471	3.81740335756003	4.00103263504285	3.75832456426587	4.229856652845	0.257230321171566	0.568677737808156	0.808943456961644
Merged-chr3-123236128-2	chr3	123236033	123236233	+	698.0	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080451)	promoter-TSS (NM_080451)	16.0	NM_080451	118449.0	Mm.34359	NM_080451	ENSMUSG00000050315	Synpo2	1110069I04Rik|2310068J10Rik|9530006G20Rik|AI848603|Myo	synaptopodin 2	protein-coding	2.90790553339489	2.91451219817583	3.2784550762668	3.12600807336933	2.70804126914982	2.66344065967348	2.70240987618358	2.8440447768345	-1.59297851273049	0.0166060701784534	0.112732805839975
Merged-chr3-152210386-4	chr3	152210288	152210488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355372)	promoter-TSS (NM_001355372)	-34.0	NM_001355369	51886.0	Mm.278922	NM_057172	ENSMUSG00000028034	Fubp1	9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4	far upstream element (FUSE) binding protein 1	protein-coding	8.47782366684354	8.73080456375316	8.34748096994153	8.23344240595908	8.62615118035032	8.76256544236755	8.48887079144424	8.42788533390628	0.157634084047123	0.375373475527833	0.678380861590302
Merged-chr5-130000946-4	chr5	130000861	130001061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357027, intron 1 of 2)	intron (NM_001357027, intron 1 of 2)	2088.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	8.04013003931736	8.35788048747529	8.16316361448138	8.15995091917167	8.09262478505404	8.20532849077194	8.39187291787209	7.9952310384933	-0.0104445792178724	0.951465029424071	0.982765401227304
Merged-chr8-111550389-4	chr8	111550335	111550535	+	954.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	12092.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	4.45025796954729	4.10840733081963	4.63382948162071	4.56304007119078	4.36138699382866	4.10445318769854	4.21852049530116	4.08670958566849	-0.605206070669765	0.139595346109637	0.415449228891941
Merged-chr9-106394870-3	chr9	106394771	106394971	+	990.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26239.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	2.81907105404484	2.95823050801087	2.90324113336381	2.41884129170462	4.04259153255496	3.32207057448342	3.81161506269218	3.94840739742569	4.75384154027566	1.35631237044086e-10	1.01836453813934e-08
Merged-chr16-78277728-3	chr16	78277611	78277811	+	798.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BC1_Mm|scRNA|scRNA	-22257.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	3.80880202331342	3.99893837084113	3.75926122258319	3.76271602435825	3.53126783234442	3.92997080849531	3.74363718192035	3.34081269506034	-0.559459406029238	0.258781108444798	0.570557316072094
Merged-chr7-97765409-4	chr7	97765329	97765529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23112.0	NM_001357365	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	5.98804993361927	6.13922730475148	6.0323723958502	6.42812046905348	5.87264355533881	5.78664692068977	5.91403232418744	6.04913712968283	-0.423512829766699	0.09368476214671	0.334808840931901
Merged-chr14-31662192-4	chr14	31662102	31662302	+	865.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025295, exon 2 of 4)	exon (NM_025295, exon 2 of 4)	21145.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	3.84777977099038	3.60823678040105	3.80044068391914	3.58897173888505	3.75394666512688	3.64598336349002	3.78432372673873	3.74848667040943	0.0922093914787735	0.841431820204462	0.93973727159138
Merged-chr3-84827949-4	chr3	84827852	84828052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 1 of 13)	intron (NM_001177773, intron 1 of 13)	12375.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	6.13016087768643	5.74208387964178	6.39931644054243	6.1806255061286	6.21619333718146	6.20312700804853	5.70793971141294	5.97909813951982	-0.13218905333377	0.625134329461693	0.839735974131569
Merged-chr7-45635405-4	chr7	45635316	45635516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152217)	TTS (NR_152217)	3342.0	NR_152217	100126243.0	Mm.440600	NR_152217	ENSMUSG00000110357	A030001D20Rik	1110025D03Rik	RIKEN cDNA A030001D20 gene	ncRNA	6.74634691378545	6.97329693773654	6.00592304843612	6.26230373992872	6.89710533369347	6.83672318573145	6.28452015833927	6.79756665664196	0.25477691725057	0.372626363273136	0.676386604956396
Merged-chr13-23563300-4	chr13	23563191	23563391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178205)	promoter-TSS (NM_178205)	-926.0	NM_178205	319151.0	Mm.261658	NM_178205	ENSMUSG00000069273	Hist1h3e	H3-f|H3.1	histone cluster 1, H3e	protein-coding	5.05195051674929	5.23986432448322	5.08783516892851	5.13132596029825	5.05847701998366	5.51018898745791	5.09698982539265	5.49387351549819	0.305085898940812	0.32326117263237	0.63472475260819
Merged-chr5-54053645-5	chr5	54053593	54053793	+	997.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 2 of 11)	intron (NM_001081103, intron 2 of 11)	55170.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	4.02017422013276	4.12165146795647	4.30117386324383	4.26001058886494	4.27846900085073	4.24591698912631	4.40034580576336	4.01846415154554	0.146024133811202	0.716961728355079	0.88685113334428
Merged-chr2-126713153-4	chr2	126713062	126713262	+	823.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019729, intron 1 of 18)	intron (NM_019729, intron 1 of 18)	5834.0	NM_019729	84092.0	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	4.31233003441952	4.20161849656433	4.18482470835042	4.15477004335451	4.14098505074465	3.94548450477114	4.29317951853367	4.0399858898175	-0.244023502589589	0.54739153445196	0.796801203107549
Merged-chr13-51946366-4	chr13	51946274	51946474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99699.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	7.27967781295795	7.40066631385446	7.27010751215682	7.43578366775496	7.48244339195253	7.52098097391463	7.44284906534629	7.22080505975623	0.0910716021610203	0.612731434460308	0.832832725096038
Merged-chr11-100555752-4	chr11	100555670	100555870	+	869.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 7 of 11)	ORR1E|LTR|ERVL-MaLR	10138.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	4.79307625086762	4.60937714091385	4.24910137453417	4.29465414270652	4.78330525341591	4.52735622824016	4.8988156562524	4.52628497788562	0.444719121107332	0.242481385861298	0.553209479926322
Merged-chr2-104750769-3	chr2	104750668	104750868	+	885.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7967.0	NM_144804	211896.0	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding	3.53269029918082	3.5995014133418	3.20683339719193	3.62474656703151	3.72995952280885	3.81551075444043	3.95258102719432	3.69437044063147	0.882311767148205	0.0775438196529634	0.301171812163094
Merged-chr9-57862056-4	chr9	57861945	57862145	+	933.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27811.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	4.45983902970271	4.71563006097301	4.31787523918826	4.24823580997727	4.65995375802543	5.01696339074064	4.68370244761896	4.84380683412874	0.789724887752271	0.0310273400918027	0.171187895542549
Merged-chr15-39198213-5	chr15	39198157	39198357	+	796.366638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256382)	promoter-TSS (NM_001256382)	-29.0	NM_001256382	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	3.14174035488525	2.77637870777404	2.98734815821168	2.79981384136678	2.67500528962267	2.62728099734849	2.66640347351281	3.09135008893583	-0.709413153431266	0.294576302137903	0.606753248127819
Merged-chr1-152809572-2	chr1	152809472	152809672	+	962.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 2 of 15)	MTA_Mm|LTR|ERVL-MaLR	9419.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	3.51089348087518	3.59576378266231	3.33938251288938	3.08544689430754	3.55608451940331	3.62834976653167	3.44297292814113	3.50938997031934	0.505338939566629	0.337867854761047	0.647682422612819
Merged-chr6-29735551-4	chr6	29735465	29735665	+	805.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176996)	promoter-TSS (NM_176996)	68.0	NM_176996	319757.0	Mm.29279	NM_176996	ENSMUSG00000001761	Smo	E130215L21Rik|Smoh|bnb|smoothened	smoothened, frizzled class receptor	protein-coding	3.80852609863046	3.5693483547473	3.8091139576971	3.55599424166871	3.59505602565702	3.42986480598774	3.36971873288261	3.66266735268534	-0.512910509072133	0.304098670193763	0.616773351149095
Merged-chr1-132335156-4	chr1	132335059	132335259	+	974.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19034.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	4.74992611568476	5.37500462498025	5.04513005901786	4.10354199934981	4.62675038730872	4.73036833827891	4.08069640416824	4.31555701720197	-0.921590770483193	0.051863355660578	0.236943632385384
Merged-chr5-105148244-4	chr5	105148146	105148346	+	937.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-8660.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	5.14321663916128	5.10086027806812	4.53156021027534	4.46518315126596	5.60355767973019	5.84131886625331	4.94528215140243	5.32261553178507	1.17040774878242	0.00196033797536872	0.0230772770108685
Merged-chr18-67186430-4	chr18	67186338	67186538	+	916.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177137, intron 4 of 11)	intron (NM_177137, intron 4 of 11)	-18921.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	7.18759708920669	7.35253148041411	7.3156028395204	7.49197363439378	4.89194144026836	5.40302511722281	5.17695655004748	5.32309473393022	-3.41322500269775	9.40650912293799e-39	3.34772956430802e-35
Merged-chr6-128891221-4	chr6	128891129	128891329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001254946)	promoter-TSS (NM_001254946)	-105.0	NM_001254946	232406.0	Mm.30745	NM_001254946	ENSMUSG00000090164	BC035044	-	cDNA sequence BC035044	protein-coding	6.65685739798772	7.31516457577958	7.49957713701054	7.01273450879086	6.81443697591746	6.90011318154012	7.03817610433097	6.76321802316235	-0.380480747638016	0.107238340570337	0.361296816559665
Merged-chr2-150921852-4	chr2	150921744	150921944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 4 of 6)	intron (NM_027014, intron 4 of 6)	12250.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	7.17973826030059	7.00680270861641	7.22424714331777	7.25905109413557	6.96300218518923	7.06102110485909	7.04201235728816	7.03621097772626	-0.209116488004883	0.260544377274108	0.572332445452388
Merged-chr2-28401876-4	chr2	28401777	28401977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46064.0	NM_001005420	241289.0	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	5.44298068381446	5.66406476144263	5.58279351143926	5.47050724550448	5.64862470598861	5.52900389202658	5.416994381977	5.75022251323035	0.0967290490662739	0.719296236570982	0.887865894786889
Merged-chr2-152406267-4	chr2	152406165	152406365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8219.0	NM_011438	20667.0	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	7.53181684478376	7.50538386098903	7.54193584337363	7.44693447788471	7.29314556558647	7.06482871507444	7.67665433001188	7.24014743354114	-0.219242833926466	0.265168433864585	0.576956662317123
Merged-chr4-128611082-4	chr4	128610977	128611177	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177758)	promoter-TSS (NM_177758)	-979.0	NM_177758	269585.0	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	5.96430852848912	5.78874930311801	5.03381866869069	5.05197124316558	5.57249524348523	4.97561914421496	4.41878536437338	5.20362185764939	-0.769759183912329	0.232863216702074	0.542464407511367
Merged-chr8-122463961-4	chr8	122463796	122463996	+	956.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3204.0	NM_013914	30927.0	Mm.103673	NM_013914	ENSMUSG00000006587	Snai3	AI643946|Smuc|Zfp293	snail family zinc finger 3	protein-coding	4.37987238842494	4.31504638657014	3.98828838105257	3.75709298385763	4.04539112937408	4.0599270158207	3.81106596289525	4.26006735617799	-0.184948164108827	0.687991749771401	0.872602637190276
Merged-chr19-6976244-4	chr19	6976154	6976354	+	879.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008889, intron 1 of 3)	intron (NM_008889, intron 1 of 3)	1206.0	NM_008889	18938.0	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	3.98511399872314	3.73989663059943	3.68005048591514	3.72443796881407	4.09023124857181	3.96256982703046	3.7217193637864	3.93718476938776	0.449462920323416	0.315104835127011	0.62702878136683
Merged-chr12-102392288-6	chr12	102392215	102392415	+	887.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47498.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	3.43293503312673	3.09947088474107	3.37679765246043	3.55488679159165	3.53320290346628	3.43060063255299	3.30592320448408	3.681521226264	0.371845343047375	0.489847542446428	0.761966459176932
Merged-chr18-36379503-3	chr18	36379395	36379595	+	873.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081365, intron 2 of 2)	intron (NM_001081365, intron 2 of 2)	30871.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	3.92227639081095	3.36265742409455	3.7946829704353	4.0476367336214	2.99127379114984	3.35742691142999	3.08891095530421	3.48923632449922	-2.01345466493807	0.000959307648296321	0.013018600400016
Merged-chr6-70769027-3	chr6	70768937	70769137	+	936.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009075, intron 8 of 8)	intron (NM_009075, intron 8 of 8)	23138.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	3.6543660067151	3.8217327110866	3.98674912177399	3.95600159692369	3.65494565437349	3.53077020758072	3.47044329326938	3.80649311336483	-0.746945951903495	0.120983611058023	0.385163809441767
Merged-chr10-8762112-3	chr10	8762005	8762205	+	848.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	123965.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.32818439574797	3.60709713430158	3.68870576447587	3.08767324633573	3.18511669234282	3.613424796053	3.25610534533235	3.13634317386399	-0.475540882115451	0.414485122400467	0.709044594374843
Merged-chr11-121673280-4	chr11	121673206	121673406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178664)	promoter-TSS (NM_178664)	-155.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	8.89118501550369	9.02916839253554	8.78212687334412	8.70048891551346	8.88673636897474	8.99668663192589	8.96433395492287	8.61387009516734	0.0243887284245541	0.881550248613115	0.955384724180766
Merged-chr10-119079465-4	chr10	119079350	119079550	+	824.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13455.0	NR_045348	73400.0	Mm.416864	NR_045348	ENSMUSG00000100681	1700064J06Rik	-	RIKEN cDNA 1700064J06 gene	ncRNA	4.45376445837674	4.15405773918612	3.97666298486508	4.08275388032056	4.05618648539768	3.80439974626176	4.28094186821448	4.29805317322577	-0.124008333581959	0.77530448590244	0.912320643528997
Merged-chr15-79433136-4	chr15	79433051	79433251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359863, intron 2 of 10)	intron (NM_001359863, intron 2 of 10)	8667.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	5.75379459811838	5.39136568480889	5.65710793066912	6.05843458278592	5.12933522148753	5.75386271112896	5.37825860006718	5.79680124926254	-0.365805640851573	0.252185384144093	0.563542923002808
Merged-chr13-115900920-4	chr13	115900829	115901029	+	943.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	408759.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	4.77700795675249	4.91647534980082	4.8836496840652	4.97581189563189	4.97398539063722	4.3672064305394	4.47045561793855	4.61839889738377	-0.515748907777232	0.160641000590847	0.448876227004313
Merged-chr15-81845867-4	chr15	81845730	81845930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12496.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	8.32686337865687	8.62390238870895	8.38307600685979	8.47763959583783	8.60117698418805	8.58740743910065	8.48087345797013	8.31150685292483	0.052702829223803	0.74309264798504	0.89875937230248
Merged-chr11-57645310-4	chr11	57645215	57645415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134189)	promoter-TSS (NM_134189)	-127.0	NM_134189	171212.0	Mm.271670	NM_134189	ENSMUSG00000020520	Galnt10	AU018154|C330012K04Rik|GalNAc-T10|GalNAc-T9|Galnt9|ppGaNTase	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding	6.09751862240638	6.43965367565729	6.51085268024176	5.90468795442559	6.22576546887267	6.33658241594283	6.08832600013174	6.02899940058558	-0.110340828073416	0.670805777892434	0.864298104130866
Merged-chr11-75513502-4	chr11	75513405	75513605	+	972.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004157)	promoter-TSS (NM_001004157)	-36.0	NM_001004157	380713.0	Mm.10486	NM_001004157	ENSMUSG00000038188	Scarf1	AA986099|SREC|SREC-I|mKIAA0149	scavenger receptor class F, member 1	protein-coding	5.37884999472632	4.87577363582222	4.64558391360485	4.75454856668666	5.12359494309692	4.69078557472226	5.05580145343431	4.45800436939799	-0.139264999511815	0.720755827830236	0.888434999898318
Merged-chr4-149709091-3	chr4	149708996	149709196	+	901.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7467.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	4.30293603545744	4.08718654046454	4.38396456971939	4.36441199766355	4.47026296158167	4.09438243829849	4.009605184983	3.97123829973126	-0.309730185362351	0.467553107421321	0.747026558181345
Merged-chr1-55553576-4	chr1	55553466	55553666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	147620.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	6.12357037686073	6.10035545286638	5.93354954308526	6.72268454843934	6.04900671027206	5.4793859468796	5.88020145094827	5.70446372499393	-0.737285258913976	0.0141367146711824	0.100643850128035
Merged-chr3-9028118-4	chr3	9028024	9028224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23401.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	5.73964000981332	6.13900181983048	6.52202202231268	6.34485196987478	6.25986600268348	5.86451119304545	6.06909553474554	6.27102765184179	-0.139619263125733	0.605065595399083	0.828698063423653
Merged-chr4-55816017-4	chr4	55815923	55816123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-283548.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	6.66170592546529	6.51974772620019	6.66288024094379	6.35047442720787	6.52808812967699	6.77792326354943	6.40328096033991	6.59746342677617	0.0562923556010908	0.798019242672315	0.921928567316738
Merged-chr14-63438194-4	chr14	63438140	63438340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177628, intron 1 of 3)	ID_B1|SINE|B4	1846.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	7.25020854968572	7.74902395224469	7.24059947787017	7.05745370143148	7.46406120050647	7.21760096848596	7.12586311770488	7.07275683829542	-0.151675495715255	0.501235674494823	0.769126136091298
Merged-chr15-103258437-4	chr15	103258366	103258566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302341)	promoter-TSS (NM_001302341)	-63.0	NM_001302341	18022.0	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	7.39184989035239	7.48724044988824	7.54927061343294	7.70865850807472	7.10791291584509	7.10238434599707	7.2964597011266	7.07896012772473	-0.538411436465531	0.00357701542006844	0.0366818009775323
Merged-chr13-113509553-4	chr13	113509469	113509669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6725.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	7.93144858719614	8.16102549236468	8.32257636763893	8.1612570275882	7.97038548458605	7.9395954621999	8.38532217781262	7.92016211435848	-0.107061080120368	0.563814958559214	0.806486928766928
Merged-chr19-29382995-4	chr19	29382895	29383095	+	877.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 5 of 6)	intron (NM_021893, intron 5 of 6)	15557.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	3.99052036458345	4.36643821448497	4.09266368479327	3.76169985263401	4.5014160152708	4.06096230384356	4.16829578712099	4.35391961905375	0.574800309311469	0.188189525270091	0.486777462722573
Merged-chr11-117946766-4	chr11	117946669	117946869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22597.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	7.57202147737531	7.63604281647445	7.32109530405	7.28527440273378	7.0159113196383	7.29695305847782	7.37416715830431	7.17370849361092	-0.325249212777073	0.098642694509857	0.344228009704091
Merged-chr7-19578191-4	chr7	19578100	19578300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022409, intron 2 of 2)	intron (NM_022409, intron 2 of 2)	913.0	NM_022409	63872.0	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	5.38216762039519	5.02680479853734	5.1729202791145	5.55727131610685	5.26159017876176	5.28123885961218	5.21083938393001	5.0675747557025	-0.197911199392506	0.524343151338388	0.782865729438594
Merged-chr9-58559782-3	chr9	58559668	58559868	+	908.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18828.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	4.04452077981994	4.05706745089141	3.57902189957857	3.7538367776444	3.46269713037987	3.69780467428916	3.1823722260326	3.26237882293146	-1.4765774308089	0.00768055809377093	0.0653081405514898
Merged-chr17-23673644-4	chr17	23673563	23673763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181821)	promoter-TSS (NM_181821)	55.0	NM_181821	353502.0	Mm.359030	NM_181821	ENSMUSG00000023904	Hcfc1r1	HPIP	host cell factor C1 regulator 1 (XPO1-dependent)	protein-coding	6.62292595366585	6.26533710904918	7.01659216613138	6.51930246510894	6.33146101653351	6.619500530753	6.59024652400939	6.69392347086877	-0.0971611696775732	0.692517274531336	0.874986225905201
Merged-chr7-6383295-4	chr7	6383183	6383383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175247)	promoter-TSS (NM_175247)	-35.0	NM_175247	22690.0	Mm.127014	NM_175247	ENSMUSG00000062861	Zfp28	2810438M17Rik|Zfp-28|mkr-5	zinc finger protein 28	protein-coding	7.25502177812149	7.32157310635545	7.45201582665361	7.6849598604011	7.49982814378851	7.60021995690069	7.68733641677352	7.13450953894702	0.0629678950459868	0.761114723830651	0.906504042208493
Merged-chr17-88040961-3	chr17	88040888	88041088	+	949.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	23944.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	4.56946527912581	4.43601048538731	4.23318818769211	4.7877695618572	4.62588439245592	4.14965867120809	4.06388798598347	4.23066611276399	-0.543076874453975	0.202877245492555	0.505410872774553
Merged-chr3-27711306-4	chr3	27711208	27711408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173182)	promoter-TSS (NM_173182)	-856.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	6.8675283881374	7.29010780660625	6.81362158957269	6.52021409002006	6.88885971471938	7.07183852604843	6.84720335809657	6.57766564299915	-0.05361616082262	0.826486595318469	0.933457528269434
Merged-chr11-44468554-4	chr11	44468466	44468666	+	886.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024475, intron 1 of 10)	intron (NM_024475, intron 1 of 10)	1982.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	4.54143928580175	4.47612440937691	4.14002157202249	4.07801890387616	4.38680435334826	4.41697935279186	4.5944310075326	4.57690908184171	0.427508460263989	0.274152702449783	0.585880301668511
Merged-chr9-69289843-4	chr9	69289721	69289921	+	914.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289916)	promoter-TSS (NM_001289916)	-20.0	NM_001289916	19883.0	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	5.36575541648755	5.51684209990301	5.17170508139245	5.09604988569543	4.28024325394516	4.79711635873812	4.84327857313411	4.82456709966971	-1.1965489498275	0.000791739336063515	0.0111462053405192
Merged-chr12-73659937-4	chr12	73659826	73660026	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	75130.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	5.72277016646273	5.19737870811016	5.33481902643133	5.60898757105627	5.04314614882599	5.0475362294079	5.60258804761864	5.55318657720594	-0.269586836125023	0.405881076585349	0.702456276834042
Merged-chr8-70439691-4	chr8	70439582	70439782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004062)	promoter-TSS (NM_001004062)	-109.0	NM_001004062	382056.0	Mm.227767	NM_001004062	ENSMUSG00000003575	Crtc1	AI413414|Mect1|R74955|TORC1|mKIAA0616	CREB regulated transcription coactivator 1	protein-coding	7.93774423759447	8.24297886622806	7.6541921546198	7.82848231570806	8.01199367281912	8.08798296532596	8.10246668838549	7.9051112377665	0.121818080907626	0.51230245590276	0.775772290367036
Merged-chr16-58481374-4	chr16	58481255	58481455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	42071.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	8.29421263419807	8.42128164431099	8.41910848447789	8.05022059133099	7.56378262829408	8.02190851432384	7.9173138319265	7.89942983909903	-0.571553197942635	0.00211189653653679	0.0243832414556613
Merged-chr15-12119159-1	chr15	12119059	12119259	+	766.0	f0_balb.idr	intron (NM_001358823, intron 2 of 18)	intron (NM_001358823, intron 2 of 18)	1308.0	NM_001358823	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	4.00566049624207	3.89222781764757	4.14467613089574	3.82730616346165	4.04058724516836	4.12959363983164	4.03649885244987	4.14207096986882	0.3378954596732	0.418277193430246	0.711819259579483
Merged-chr17-74020706-4	chr17	74020601	74020801	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053188, intron 4 of 4)	intron (NM_053188, intron 4 of 4)	27215.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	4.36312615248814	4.36454976485517	4.31962339621835	4.24625723244967	4.39459664245453	4.4479027998583	4.20840668964908	4.66755246635399	0.282039080534298	0.456637131350943	0.739965267442886
Merged-chr8-84998037-4	chr8	84997948	84998148	+	989.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001167991, exon 15 of 22)	exon (NM_001167991, exon 15 of 22)	7453.0	NM_001167991	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	5.72415841102976	5.76322890558459	5.35309709759958	5.70081306833109	5.7858719102926	5.28231164613398	6.02015600938583	6.10298661914279	0.306874177728513	0.30314154766196	0.615670331523426
Merged-chr18-80729540-4	chr18	80729457	80729657	+	879.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16486.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	4.33327440885258	4.52879087438001	4.02801762887004	3.73433954511372	3.8473123424559	3.74946201081499	4.10471242745359	4.16557485099728	-0.546990733974077	0.257857488917578	0.569693582005417
Merged-chr4-101302274-4	chr4	101302160	101302360	+	931.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36978.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	4.20454592317583	3.77103241988576	4.24803711505697	4.10504156750339	4.20883140620919	4.0892878980366	4.18634997926492	4.15829264656638	0.184963140716185	0.657190365444914	0.857123881679102
Merged-chr11-83631294-4	chr11	83631174	83631374	+	986.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18104.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	5.69440295215341	5.47290649034449	6.06022560720061	6.17053468395064	5.35941853219823	5.12529598512663	5.64141279303135	5.64056534015425	-0.72389846484677	0.0199194960871318	0.127734217296032
Merged-chr12-110499390-1	chr12	110499290	110499490	+	552.0	f0_balb.idr	intron (NM_001081457, intron 1 of 12)	intron (NM_001081457, intron 1 of 12)	13651.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	3.08902145444009	3.02509917271652	3.03270036545802	2.99834771753623	3.30751404021314	2.88257261531695	2.62297829485158	2.8445135141745	-0.357856598021343	0.594991206456467	0.823690662135616
Merged-chr17-34120491-4	chr17	34120383	34120583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037970)	promoter-TSS (NR_037970)	-583.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	6.57797115870398	6.78815095638138	6.66105154612113	6.51767263794464	7.14078332184054	7.19377194331812	7.04040055944175	6.87414380025043	0.612123799102303	0.00230999795480323	0.0261321272131181
Merged-chr2-84794139-4	chr2	84794050	84794250	+	883.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS4|LTR|ERV1	-4678.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	4.7314216620559	5.47399066490312	4.64685148559007	3.91095957243282	5.48833256632527	5.20192678264831	4.93467348710468	4.68710732288028	0.564134989323112	0.23370559381222	0.543421601409349
Merged-chr8-35393637-4	chr8	35393547	35393747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	17906.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	5.8306548581426	5.68231277769246	5.78414112198529	5.79127605941781	5.68961648398993	5.72245775892885	6.07198776078446	5.82753501462511	0.0963991750267512	0.705099686059022	0.881587544161158
Merged-chr9-123936823-4	chr9	123936729	123936929	+	995.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31863.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	5.64746499127076	5.82751809672166	5.51721828446404	5.37712751775876	5.66204320600577	5.89390568124801	5.03274362309341	5.33575925528679	-0.125118605688335	0.695866799637213	0.876936066912949
Merged-chr12-98292484-4	chr12	98292382	98292582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23847.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	5.75946936746764	5.56018387591411	6.33002471635243	6.22716389495184	5.81640292480417	5.62276070407099	6.23069398269122	5.87875386771722	-0.171903777490936	0.568002608047606	0.808419300518297
Merged-chr18-53158353-4	chr18	53158223	53158423	+	582.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17969.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	3.25094565583963	3.34067709540978	3.36749793056953	3.20647702640097	3.44576626187211	3.23458128866824	3.23986071127073	3.61629265913009	0.387024808223656	0.46271165168807	0.744207905539104
Merged-chr10-63153821-3	chr10	63153710	63153910	+	890.5277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182992, intron 6 of 19)	intron (NM_182992, intron 6 of 19)	50142.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	4.03708215365841	3.70349288225684	3.94962319094898	4.15763830007429	3.3590823095443	3.81776317446926	3.68381862941116	3.69627568531921	-1.0161847786593	0.0388563187752601	0.198008394869766
Merged-chr11-59964986-3	chr11	59964885	59965085	+	910.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009026)	promoter-TSS (NM_009026)	-41.0	NM_009026	19416.0	Mm.3903	NM_009026	ENSMUSG00000049892	Rasd1	Dexras1	RAS, dexamethasone-induced 1	protein-coding	3.3657036617219	3.50381507242085	3.310231707266	3.57483424971139	3.14195147041892	3.09645834636202	3.1805937343169	3.51764264460261	-0.765123244754582	0.16931102697322	0.461822724438512
Merged-chr8-85841587-4	chr8	85841483	85841683	+	953.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028007)	promoter-TSS (NM_028007)	581.0	NM_199446	102093.0	Mm.237296	NM_199446	ENSMUSG00000036879	Phkb	AI463271	phosphorylase kinase beta	protein-coding	4.81061154342296	4.79332581741476	4.51511759539504	4.92639526511298	5.09653962458276	5.09222899026867	5.02712968197434	4.76986101417683	0.441918316672158	0.188036552329769	0.486541939824349
Merged-chr2-10142859-1	chr2	10142759	10142959	+	979.0	f0_balb.idr	Intergenic	Intergenic	-10684.0	NM_172471	209378.0	Mm.313876	NM_172471	ENSMUSG00000025780	Itih5	4631408O11Rik|5430408M01Rik|E130106B02	inter-alpha (globulin) inhibitor H5	protein-coding	3.33517363652578	3.32839759802946	3.74660589022221	3.77872427170007	3.43989690587331	3.17881754190387	3.19865376332023	3.60547103364295	-0.677409780494901	0.230460059111098	0.539904438253921
Merged-chr16-16571540-4	chr16	16571439	16571639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	-11320.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	7.47981020968647	7.58865500704787	7.42465278872149	7.31796590408018	7.14078297924348	7.22351892322664	7.30866518590934	7.60671824068746	-0.166080348255378	0.392463768253401	0.691933206965634
Merged-chr4-128727932-4	chr4	128727827	128728027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	CpG	356.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	4.90783265285266	5.08993845462608	5.07967933772014	5.04282502090756	5.06074984171825	4.66251525946667	5.23193160137634	4.86828001575223	-0.10359301319046	0.751221418479199	0.902050378109251
Merged-chr11-5789410-4	chr11	5789312	5789512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146309, intron 1 of 12)	intron (NM_001146309, intron 1 of 12)	929.0	NM_013810	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	5.81947323022303	6.10256544417345	5.66752338905436	5.67316085767966	6.16042551459185	5.94694663446024	5.88345887542619	5.86370334302503	0.249804930492662	0.338070507274289	0.647782401621467
Merged-chr4-24568224-4	chr4	24568124	24568324	+	942.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149739, intron 13 of 24)	intron (NR_149739, intron 13 of 24)	71773.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	5.24012975834509	5.05144786098115	5.32576977355069	5.55349990045236	4.54385850287041	4.8852867058488	4.76759392820621	5.1775858641057	-0.89391227937003	0.00954233897689374	0.0762942655575257
Merged-chr5-67302113-4	chr5	67301982	67302182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4873.0	NM_178651	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	6.09616182153219	6.05812592787951	6.17793274168561	6.1647358082801	6.1524280344347	6.27246295150415	6.04529976218379	6.17352036668006	0.0520349503953466	0.818042970116486	0.930166305690528
Merged-chr3-79531869-4	chr3	79531730	79531930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	35849.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	8.0349898437544	7.98795357507354	8.27190433936365	8.12930967152674	7.7102710113753	7.79159789392541	7.80131318131008	7.88600531615847	-0.407785196367399	0.0130230431432198	0.0950930640019737
Merged-chr9-78175504-4	chr9	78175410	78175610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040401)	promoter-TSS (NR_040401)	-404.0	NR_040401	320295.0	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	6.75672029854184	6.75872953905538	6.80952468908358	5.97888278957994	6.24545354742474	6.18358566407808	6.19158114633611	6.1357766076078	-0.613863225624004	0.024748948862237	0.147476386024711
Merged-chr5-65076306-4	chr5	65076207	65076407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-31261.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	6.17930988061209	6.29634025719146	6.59459232553962	6.58575805104678	6.2952521339429	6.11187586627133	6.1488219551964	6.31143530146448	-0.318053075752024	0.174424450124098	0.468893342978441
Merged-chr15-81872397-4	chr15	81872324	81872524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080633)	promoter-TSS (NM_080633)	-39.0	NM_080633	11429.0	Mm.154581	NM_080633	ENSMUSG00000022477	Aco2	Aco-2|Aco3|D10Wsu183e	aconitase 2, mitochondrial	protein-coding	6.94508038793303	6.80468294716692	6.0623876011547	6.41033918640112	6.78246347670038	6.95267215842664	6.59424892097151	6.98926537039442	0.343165619578909	0.182968060437875	0.47979235093971
Merged-chr14-120244880-4	chr14	120244784	120244984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30785.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	5.18873161311916	5.09320073393219	5.49969474153055	5.6103363085121	5.14230772953041	4.72816572482863	5.2557757163479	5.18604671425611	-0.515325911055828	0.117253155497386	0.378690610061639
Merged-chr9-65578113-6	chr9	65577992	65578192	+	995.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 1 of 5)	intron (NM_153119, intron 1 of 5)	1995.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	3.39542745045525	3.32843940546514	3.39586925615804	3.41115811604184	3.28307165562917	3.87248755641251	3.4938101390819	3.45129358639002	0.50654871209013	0.330388044783068	0.641796043873533
Merged-chr4-132476439-4	chr4	132476370	132476570	+	877.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-12549.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	4.90396693989538	4.70845667601333	4.49700118212166	4.65495375853824	4.1068903491391	5.00972160520221	4.60000276449444	4.35639073824955	-0.31495125779363	0.44295231342679	0.729629169998677
Merged-chr4-133928937-6	chr4	133928821	133929021	+	981.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	39070.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	4.04911573473515	4.1005126266367	3.88960326463237	4.47854756068463	4.14767460685471	4.22341064023392	4.08163900932817	4.39634256931056	0.112144795535803	0.797977678226464	0.921916136316856
Merged-chr10-128377075-5	chr10	128377000	128377200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172790)	promoter-TSS (NM_172790)	-24.0	NM_172790	237615.0	Mm.440177	NM_172790	ENSMUSG00000014498	Ankrd52	6430544C07|G431002C21Rik	ankyrin repeat domain 52	protein-coding	5.9813511223175	6.11843399923716	5.76662130040587	5.73545165893595	6.05215118337421	6.17951954430883	6.32758050733211	5.91025825204454	0.349433928756737	0.167271486817401	0.458831444763797
Merged-chr1-136605990-4	chr1	136605916	136606116	+	764.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18885.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	4.04597745028518	4.17114988009932	3.94166256129714	4.43668375805483	3.93977999020397	4.17070459415067	4.48507396736058	4.14114883462338	0.0372601135817975	0.932713236212095	0.975757296785564
Merged-chr10-125213246-3	chr10	125213143	125213343	+	871.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95573.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	4.11096496511996	4.02771419870946	4.51280683739631	4.67599828792649	4.06801291651189	4.03102819456419	3.65456333281678	3.84927300652504	-1.18209302831399	0.0123019330072638	0.0914740169912025
Merged-chr3-30515161-3	chr3	30515057	30515257	+	900.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5482.0	NM_021442	14013.0	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	3.78608467836057	3.75392113308326	4.22904238967682	3.83827235756043	3.20261028004536	3.51360026340463	3.44665785764737	3.25863504730467	-1.87755609736347	0.000535650810643254	0.00816425889738248
Merged-chr11-117358431-4	chr11	117358305	117358505	+	926.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017380, intron 8 of 9)	intron (NM_017380, intron 8 of 9)	26092.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	4.80228327151841	5.12930685840513	4.31366436477924	4.80129102567306	5.3900199748772	4.82208837365559	4.49307013237384	4.59982305447866	0.189062487964729	0.654801704090995	0.855720388544032
Merged-chr5-122989272-4	chr5	122989159	122989359	+	879.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045820)	promoter-TSS (NR_045820)	-95.0	NR_045820	109202.0	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	4.05637132547879	4.20341063913302	4.23835146889074	3.92591490662038	4.17818243172063	4.27641630771985	3.77372188943562	4.19273166752644	0.0455110754922849	0.915690646523305	0.968763998229684
Merged-chr1-34005813-4	chr1	34005710	34005910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 3 of 102)	intron (NM_001276764, intron 3 of 102)	-6015.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	5.79773706870952	5.63324701987205	5.79875433646037	5.93218776083388	5.58011475069363	5.79651636474578	5.86036835667396	5.81816274210185	-0.0730389561715491	0.777045677266188	0.913034573074491
Merged-chr10-95508988-4	chr10	95508898	95509098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6164.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	6.83748738861712	7.26861251526734	6.96026366214844	6.99379407148884	6.88160281141285	7.22368011525498	6.83192790838248	6.929340527819	-0.0781308617165281	0.707854647418267	0.882651331369845
Merged-chr9-124013435-4	chr9	124013321	124013521	+	802.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8550.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	4.34718533082132	4.23505071856187	4.17398609120802	4.65831436139211	4.09998545120043	3.9203620422177	4.15594768538546	4.12410096206273	-0.765788857162484	0.0691703210609788	0.281212833150526
Merged-chr2-156392972-4	chr2	156392881	156393081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024329)	promoter-TSS (NR_024329)	-2.0	NR_024329	347740.0	Mm.324242	NR_024329	ENSMUSG00000102869	2900097C17Rik	1810005K14Rik|4930563C06Rik	RIKEN cDNA 2900097C17 gene	ncRNA	5.57487789618331	5.79927857269476	5.46503988927814	4.91254374255158	5.60751387880941	5.58263618458707	5.59922148647331	5.83409887694132	0.336291396253499	0.293743304002296	0.606184232084391
Merged-chr1-152800877-3	chr1	152800708	152800908	+	674.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 1 of 15)	intron (NM_010877, intron 1 of 15)	655.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	3.76653758012559	4.02063904604538	3.61093771363237	3.53173842685326	3.61475038643045	3.48337202080297	3.70171610376982	3.6630599135142	-0.375287360362938	0.446433059474424	0.732119961404325
Merged-chr15-73634935-2	chr15	73634835	73635035	+	862.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10191.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	3.07284821076357	3.12197850200873	3.07322049218634	3.07363981068168	3.32849772237689	2.91172099927258	3.00149339312019	3.24089528783733	0.216466820680872	0.707653158299016	0.882529695648857
Merged-chr7-47146511-3	chr7	47146417	47146617	+	875.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12833.0	NM_013643	19259.0	Mm.4654	NM_013643	ENSMUSG00000030854	Ptpn5	Step	protein tyrosine phosphatase, non-receptor type 5	protein-coding	3.42767912016555	3.45396828139732	3.4281188958212	3.70719217612092	3.24528795472515	3.65480142091879	3.47115285478392	3.58866353651518	-0.0978582875531093	0.850926598159578	0.943781231775128
Merged-chr2-48844340-4	chr2	48844215	48844415	+	829.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007396, intron 1 of 10)	intron (NM_007396, intron 1 of 10)	30206.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	4.01705715525991	3.7707628401857	4.30943947375902	4.27910110813618	4.00752351523287	3.69305691363498	4.00025811339504	3.69837141512277	-0.685920078868937	0.144552532208635	0.423698924809686
Merged-chr16-22108339-4	chr16	22108263	22108463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	54936.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	5.75793795959882	6.37644886732271	5.97510420897087	5.53608826359474	6.18088309537811	5.98741974760572	6.02941451599686	6.07659229220749	0.210307534529971	0.45985358727909	0.742271214480192
Merged-chr6-113494607-4	chr6	113494447	113494647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172487, exon 4 of 4)	exon (NM_172487, exon 4 of 4)	7271.0	NM_172487	210673.0	Mm.133060	NM_172487	ENSMUSG00000045009	Prrt3	6330505P20|B230206N24Rik	proline-rich transmembrane protein 3	protein-coding	6.90023937072035	6.97029501929942	6.72447723364311	6.22586157411985	6.65590491190487	6.90079373073136	6.53545134555197	6.76277627852596	-0.00710427547411028	0.977244761368864	0.991888117862217
Merged-chr3-79174219-4	chr3	79174129	79174329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28354.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	5.92309965965528	5.70599481001033	5.90190162143298	5.69386484963932	6.06420785482065	5.80424881196102	5.9156904556687	5.87507306840091	0.207929781118162	0.404044019781564	0.70122651118451
Merged-chr14-121421682-4	chr14	121421579	121421779	+	868.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42449.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	4.48647180348029	4.56880002647734	4.48717616517015	4.87457804962403	4.28536273434794	4.53023334079471	4.46680108752115	4.39809023630965	-0.492386342946591	0.191809235540962	0.491231230042461
Merged-chr5-107986654-1	chr5	107986554	107986754	+	1000.0	f0_c57.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	423.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	5.18976783148596	5.04028005358778	5.39668683281239	5.01475665228417	5.09470526453949	5.45593516333333	5.34228263922958	5.18708165144043	0.210495817584878	0.491489046471526	0.763053173354784
Merged-chr7-92985083-7	chr7	92984967	92985167	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94812.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	4.06249635559743	4.08382121756062	4.53741384194344	4.57034029345359	4.25128538390829	4.23928330957543	4.28147885237244	4.16093993106293	-0.278003239100745	0.504130048448172	0.770626277304553
Merged-chr9-100446219-4	chr9	100446133	100446333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40240.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	5.97771266819663	6.0539473946439	6.27670281988648	5.79262814770189	5.62583855895374	5.61569028965137	5.83893669103411	5.49452546139293	-0.609392324747667	0.0231220469410106	0.140843316310229
Merged-chr2-35496732-3	chr2	35496630	35496830	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35281.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	3.4833007684745	3.50749216331067	3.74327750507439	3.98153810237214	3.39867486021019	3.41149059068605	3.52637157014871	3.53811870663969	-0.785035043719842	0.129417294427552	0.400360889731452
Merged-chr12-85698585-3	chr12	85698486	85698686	+	734.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	11866.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	3.30772224094449	3.42785423255156	3.47540989143573	2.78893414830017	3.60050404861655	3.53918297603288	3.23553866248333	3.30639414828011	0.546466446309557	0.364371433627741	0.669265956462516
Merged-chr2-132263072-4	chr2	132262983	132263183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138651)	promoter-TSS (NM_138651)	-65.0	NM_001291040	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	8.44088868398107	8.5434022446319	8.44224063314347	8.45767893342682	8.46911338937456	8.67540236256691	8.57983302090319	8.43162017664361	0.0858107022786963	0.565326330181363	0.807484254529715
Merged-chr2-124620661-4	chr2	124620547	124620747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	10351.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	7.04847180919087	7.1077112926604	7.01281752425939	7.41868931407776	6.96011862476371	6.92792945869249	7.06152874761689	6.79058657519857	-0.321286791692498	0.116460882564494	0.377536510454894
Merged-chr19-29641675-3	chr19	29641570	29641770	+	878.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362131, intron 2 of 14)	intron (NM_001362131, intron 2 of 14)	6745.0	NM_001081213	226090.0	Mm.267131	NM_001081213	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|b2b2633Clo|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	3.62426613397158	3.58068959175314	3.57035211334554	3.32412901013305	3.80843189538267	3.79568216223536	3.55643503318665	3.67485255557333	0.630095816094581	0.190023165203279	0.489103163231511
Merged-chr4-95209558-4	chr4	95209444	95209644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157322.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	6.5656476119177	6.97247494648514	6.36596333336086	6.71044279415783	6.15892351493306	6.64648255010274	5.85721199046339	5.98421135729034	-0.714496912966987	0.00830925565767912	0.068940961470794
Merged-chr13-5779593-4	chr13	5779483	5779683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78509.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	7.0026488440872	7.00905921715834	6.33611380330339	6.87638256566989	6.87848701543848	7.01300939478643	6.94423455583142	6.6859122053361	0.0657364304306634	0.773876589199771	0.91166330938482
Merged-chr2-58921261-4	chr2	58921195	58921395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	L1MA6|LINE|L1	166111.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	6.34294885806552	6.34403974451077	6.68793846353821	6.84318126250776	6.48889413651882	6.22819587166028	6.59546588219883	6.51492504832536	-0.176293321233872	0.460956255970163	0.742837857857325
Merged-chr8-83169941-4	chr8	83169866	83170066	+	915.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111304, intron 1 of 20)	intron (NM_001111304, intron 1 of 20)	4614.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	3.46075081767893	4.10432304632651	3.63753252097538	3.82204496546256	3.77242660172791	3.69792645378324	3.67664836950749	3.5208403167012	-0.332745163971971	0.505713558727079	0.771556252339237
Merged-chr13-62971056-4	chr13	62970941	62971141	+	927.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 1 of 15)	intron (NM_001289926, intron 1 of 15)	6148.0	NM_001289924	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	5.24186294950614	5.2948100507696	5.79231853550303	5.26307750921733	4.71058657439325	4.78003091801801	5.18634555954752	4.77459301492532	-1.02347665884215	0.00271991269918197	0.0295799336921426
Merged-chr13-38010264-4	chr13	38010175	38010375	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027724, intron 11 of 12)	intron (NM_027724, intron 11 of 12)	-16067.0	NM_001360842	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	4.32295893792869	4.32068022254536	5.04103110943284	4.60415453794863	4.2342284159851	4.73032379725498	5.04369390325111	4.74713805302923	0.237204622092795	0.574154112149356	0.812108092694771
Merged-chr7-45361574-4	chr7	45361463	45361663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029741, intron 2 of 29)	CpG	-4598.0	NR_015480	50994.0	Mm.389897	NM_016664	ENSMUSG00000091510	Mtag2	MAG	metastasis associated gene 2	ncRNA	5.34434727704653	5.38534450581349	5.01498079445848	5.12693093673224	5.01833126222054	5.15641257089324	5.40227887070523	5.81899020056718	0.283607401276423	0.394058338924427	0.693244649191839
Merged-chr7-118483216-4	chr7	118483066	118483266	+	695.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8809.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	4.11538536730727	4.100554001458	4.06964056611894	3.94729559191037	3.98001067572057	4.4920965851675	3.95497013257235	3.74843060107397	0.0383111583001236	0.931944110562477	0.975397745055384
Merged-chr3-97229409-2	chr3	97229309	97229509	+	854.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2045.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	3.00502347314594	2.73287424396305	2.68305363302418	2.50248005870647	3.0535328830265	3.05818006689773	2.87516047916673	3.00373188919454	1.21505583310791	0.0577691630974059	0.252294773771411
Merged-chr5-139745979-3	chr5	139745809	139746009	+	776.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9576.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	3.19105204872071	2.97288089837821	2.7486257086909	2.87173121489188	3.28188450082618	3.0657625274226	3.00885521355074	3.13499663181672	0.734069299335897	0.217361544850349	0.524246997861988
Merged-chr6-126836880-4	chr6	126836826	126837026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025358, intron 5 of 10)	RMER6BA|LTR|ERVK	12218.0	NM_025358	66108.0	Mm.29939	NM_025358	ENSMUSG00000000399	Ndufa9	1010001N11Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9	protein-coding	5.84333192164569	5.39931204223863	5.45808864142725	5.69108587243689	5.14563880583641	5.16744632897834	5.66082494613165	5.36658279901562	-0.463448115183977	0.124437573418269	0.391605890809929
Merged-chr5-29947491-4	chr5	29947389	29947589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65625.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	5.69661179969587	5.57700369142394	5.5176058003931	5.05522688410129	5.79170969341831	5.77188520150234	5.4047375922532	5.48580955426687	0.282535631452353	0.356066528166984	0.662704502355483
Merged-chr16-35047462-4	chr16	35047367	35047567	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023587, intron 2 of 6)	intron (NM_023587, intron 2 of 6)	25046.0	NM_023587	70757.0	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	5.28707493823413	5.17563856017803	5.06139869248888	5.1683880651156	5.36305984153212	5.1657591083103	5.52574351189601	5.05799692612525	0.222349307359646	0.458604699378279	0.74144172337427
Merged-chr10-77627712-4	chr10	77627615	77627815	+	928.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019803, intron 1 of 5)	intron (NM_019803, intron 1 of 5)	5394.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	4.63523401156383	4.91715226219692	4.46314251210117	4.8211657327192	4.4507766249279	4.99426116036653	4.6922061336946	4.6329775635217	-0.0691647394312484	0.850668062178527	0.943641523514094
Merged-chr1-152692878-3	chr1	152692783	152692983	+	897.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	URR1A|DNA|hAT-Charlie	-57668.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	3.176548711201	3.0736365189971	3.54494229802506	3.30740170782492	3.13844505605772	3.15887395971238	3.16570615131127	3.34599503509155	-0.312157615993001	0.576857258677131	0.813796904476851
Merged-chr18-47330392-3	chr18	47330295	47330495	+	957.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311097, intron 1 of 17)	intron (NM_001311097, intron 1 of 17)	38473.0	NM_018744	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	3.34714617807941	3.22639796008892	3.73255032312378	3.33824941782674	3.18643300846688	3.46245925108961	3.09130351003562	3.09966216683759	-0.745672824134663	0.190764767522599	0.490214281652446
Merged-chr15-81802574-4	chr15	81802471	81802671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153484)	promoter-TSS (NM_153484)	42.0	NR_155271	100504312.0	Mm.384036	NR_155271	ENSMUSG00000097613	Gm17597	-	predicted gene, 17597	ncRNA	8.02542506154895	7.89135039079441	8.06519809639991	7.95124555177331	7.78999751037948	7.91972556547528	7.85820359118047	7.78530072448828	-0.187956806430926	0.237363945626494	0.547571812858475
Merged-chr5-123829991-4	chr5	123829894	123830094	+	852.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35522.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	3.87670582123811	3.80999263165973	3.54642557826489	3.96674969389453	4.21026554491802	3.94772113401893	3.59472888946625	3.72024206529561	0.233863697944975	0.634717921290809	0.845355991778317
Merged-chr13-37742391-4	chr13	37742247	37742447	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83691.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.0734377529036	3.82559502568932	3.88658218342016	4.05738723205576	4.17058774592837	3.84445280172789	3.53079692329315	3.98137955524276	-0.152633287142866	0.746098230586542	0.899942823455279
Merged-chr10-94944870-4	chr10	94944777	94944977	+	863.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018797)	promoter-TSS (NM_018797)	-299.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	3.95120328650759	4.03255885000294	3.74174599711704	4.35508747481654	3.89215736797308	3.86068449652086	3.72774373206083	3.99693304911279	-0.508254174891832	0.275648815452663	0.587542883006081
Merged-chr16-89864886-4	chr16	89864757	89864957	+	868.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 8 of 27)	intron (NM_009384, intron 8 of 27)	-46505.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	3.83428729645695	3.74432706284347	4.29056070716712	4.23053835677129	4.11614332536339	3.89895880179962	4.06507089197917	3.83271319138015	-0.176465437263327	0.70064384870218	0.879297715090228
Merged-chr19-47731633-4	chr19	47731530	47731730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026377)	promoter-TSS (NM_026377)	-126.0	NM_026377	67788.0	Mm.181610	NM_026377	ENSMUSG00000025066	Sfr1	6330577E15Rik|Meir5	SWI5 dependent recombination repair 1	protein-coding	8.33918301724373	8.55947276658963	8.13978062341035	8.29366532460539	8.29222281087653	8.41011604289069	8.74160022080815	8.04136530782895	0.0676032641623754	0.731076096464168	0.89342225316245
Merged-chr7-100434027-4	chr7	100433939	100434139	+	922.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 23 of 32)	intron (NM_001017985, intron 23 of 32)	-38952.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	5.02002649051227	4.67493953111589	4.63975124181363	4.6944745941311	4.45416501514056	4.731809733921	4.76908245079686	4.67650271768382	-0.224090538405815	0.524726122045759	0.783073646450333
Merged-chr10-8858879-4	chr10	8858758	8858958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	27212.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	6.53041476711693	6.69046223254053	6.71612686851775	6.8718399319552	6.64322920693806	6.62274250584646	6.49819819938876	6.16521651186983	-0.313289747513639	0.164680449027414	0.454900556624874
Merged-chr12-17724718-3	chr12	17724632	17724832	+	782.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	33923.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	3.17959760170254	3.06299785098033	2.7077383675535	2.8060638969014	3.18835168508431	3.10855955353985	3.42045318768	3.23377020093491	1.17867460805448	0.050452925156895	0.233057872655112
Merged-chr9-62360900-4	chr9	62360803	62361003	+	848.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	CT-rich|Low_complexity|Low_complexity	19560.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	4.34909895454196	4.35909640552106	4.08978566101505	4.12765415054827	4.20678559595705	4.05842556666028	3.92233194353821	4.13460968924447	-0.36451924895863	0.377856691120597	0.680558922477594
Merged-chr5-99244331-3	chr5	99244207	99244407	+	962.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	B1_Mur3|SINE|Alu	8620.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.13717935805548	3.29552534846245	2.99940615605652	3.10590291558239	3.28977856836651	3.91793629389445	3.25047760940224	3.20010834006915	1.08297320869639	0.0620816863395069	0.263516748283127
Merged-chr2-132289353-4	chr2	132289273	132289473	+	992.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291039, intron 1 of 12)	RLTR17|LTR|ERVK	3434.0	NM_001291039	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	4.6945761898676	4.88314643914216	4.69532910475025	4.52112910156677	4.99738519066464	4.87336814931262	4.93547910886915	5.50058129905919	0.808829019633415	0.019984010298402	0.127951953677247
Merged-chr1-193160510-4	chr1	193160415	193160615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016851, intron 2 of 7)	intron (NM_016851, intron 2 of 7)	7403.0	NM_016851	54139.0	Mm.273695	NM_016851	ENSMUSG00000026638	Irf6	AI876454|E230028I05Rik|mirf6	interferon regulatory factor 6	protein-coding	6.88523896494375	6.70618851561901	6.74715366889903	7.00581517321218	7.10122856329415	6.81674947235398	6.62162788792505	6.75699541746154	-0.00491620098488797	0.981876696820423	0.993517682891192
Merged-chr7-7281609-4	chr7	7281511	7281711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302386)	TTS (NM_001302386)	-3322.0	NR_003555	76229.0	Mm.387947	NM_001113468	ENSMUSG00000095730	Vmn2r29	6430701C03Rik	vomeronasal 2, receptor 29	protein-coding	7.87823095256221	7.88373208791748	8.28904921627539	8.36953250274422	7.92364874026961	7.52769813490921	7.87816578468775	8.22309904076955	-0.278919824175278	0.191393699714939	0.490820440697854
Merged-chr5-64241453-4	chr5	64241347	64241547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	11090.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	7.08453106276151	7.1903572142939	7.40907124396237	7.49185544393326	6.99689163677114	7.39115080808045	7.26356801608588	7.22019707586426	-0.12885596854877	0.522606445163513	0.781990067507927
Merged-chr11-23682948-4	chr11	23682838	23683038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 4 of 17)	intron (NM_001033654, intron 4 of 17)	16962.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	5.68888667106267	5.15252849580911	6.22899262648734	6.13246189153163	5.57036829689559	5.94062601252911	5.58140502858135	5.73654548903096	-0.262650921550773	0.426511648611095	0.717943860798456
Merged-chr4-148583526-3	chr4	148583440	148583640	+	992.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-7973.0	NM_009272	20810.0	Mm.10	NM_009272	ENSMUSG00000006442	Srm	AA407669|SpdST|SpdSy	spermidine synthase	protein-coding	5.62528803191131	5.83923142568248	5.41568658320697	6.01877668944631	3.80386373559954	4.29179264912511	4.00032263198514	4.0825570394521	-4.00360222839283	1.05163633098393e-18	3.00620170293596e-16
Merged-chr3-88685791-4	chr3	88685704	88685904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028814)	promoter-TSS (NM_028814)	17.0	NR_151827	74200.0	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	7.03389205582919	7.33433098708975	6.94309524063015	7.09638232352474	7.28539477067719	7.37798657174464	7.37827292465671	7.21814140361051	0.273954889932253	0.147388655373221	0.428395487803116
Merged-chr4-139288305-3	chr4	139288229	139288429	+	842.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009798, intron 8 of 8)	intron (NM_009798, intron 8 of 8)	22379.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	3.32230345678896	3.41094561812636	4.05442482628609	3.65690000961488	3.23547414064305	3.37410802674385	3.24843585870634	3.19188609260757	-1.31895353974447	0.0204685685997913	0.130013585968637
Merged-chr17-47688100-4	chr17	47687992	47688192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290337)	TTS (NM_001290337)	294.0	NM_025365	66119.0	Mm.89912	NM_025365	ENSMUSG00000033475	Tomm6	1110002E23Rik|AI663970	translocase of outer mitochondrial membrane 6	protein-coding	7.60966655990504	7.59612256488401	7.19084890101038	7.65535388355545	7.99524678524935	7.79697307965655	7.69746140490963	7.65689259579682	0.347941064273341	0.0693074713260236	0.281545286012729
Merged-chr2-148902505-4	chr2	148902414	148902614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27002.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	5.65440215990186	5.84693740169899	6.25424563948825	6.05802923917634	5.39195322425046	5.80430628399251	5.72876516923622	5.62460323676082	-0.564898932436273	0.0429555896612158	0.210879089350692
Merged-chr17-17392062-4	chr17	17392024	17392224	+	860.712524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025934, intron 9 of 9)	intron (NM_025934, intron 9 of 9)	-10562.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	4.2518858872183	3.95654041277241	4.03019955673851	3.96502718227187	4.31585970300773	4.1536915582613	3.86040580139573	3.9783675663401	0.128282064079612	0.765603427914877	0.908323800242571
Merged-chr4-45940303-6	chr4	45940244	45940444	+	864.819458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198660, intron 30 of 37)	intron (NM_198660, intron 30 of 37)	-24991.0	NM_001290475	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	3.66985726614452	3.70922933135263	3.95874261868315	3.19509309070872	3.8293499479692	3.79039114009194	3.80580199816419	3.4962084536399	0.259404788037279	0.623472797360604	0.838954387646378
Merged-chr2-101665445-4	chr2	101665343	101665543	+	966.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12977.0	NM_009424	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	4.9901961052579	5.05282202678519	4.74354886642931	4.74191444269974	4.66324819883809	4.75459325278774	4.86727263221444	4.77884215341512	-0.24377220735025	0.467766656967826	0.74713138130134
Merged-chr1-97657356-4	chr1	97657257	97657457	+	803.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133825, intron 1 of 2)	MTC|LTR|ERVL-MaLR	4319.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	3.6784554271256	3.58946124789347	3.51045548960726	3.72393068906949	3.76082002083306	3.79662893154637	3.66427143887243	3.82568969711145	0.383172367113223	0.406690799175096	0.703078520686297
Merged-chr7-118535636-4	chr7	118535516	118535716	+	908.3916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172476)	TTS (NM_172476)	-2260.0	NM_009940	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	4.6009683878535	4.65579047446473	4.68546019715828	4.69251625788264	5.13866991064766	5.29549693963995	4.58071568189937	4.6824097495211	0.613673783035932	0.089158834788336	0.325782171529721
Merged-chr1-131560863-7	chr1	131560783	131560983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	32980.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	5.01137213921752	5.17478615566635	4.60893447276301	4.92547589092298	4.61113329564048	4.90642228541285	4.49985453607591	4.68930376388077	-0.554792500578112	0.116912316544426	0.378293562110905
Merged-chr5-95918648-3	chr5	95918548	95918748	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38291.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	5.2699978440575	4.84545267828914	5.19519497728935	4.8620469121626	3.95328480972058	4.30242332388545	4.3628780513254	4.42780000774363	-1.76129686751756	8.77159797936362e-06	0.000245229211536969
Merged-chr12-101758847-4	chr12	101758770	101758970	+	983.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361987, intron 9 of 10)	intron (NM_001361987, intron 9 of 10)	-40347.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	4.69797389121223	4.05345012145026	5.4028240683148	4.85899548478313	4.69827644689136	4.95391059240919	5.02855314611334	4.84951355951484	0.0963842244955092	0.825549967387064	0.933108872014231
Merged-chr13-95481594-4	chr13	95481510	95481710	+	838.325012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2955.0	NM_001081159	268686.0	Mm.291249	NM_001081159	ENSMUSG00000021679	S100z	Gm625	S100 calcium binding protein, zeta	protein-coding	4.06835126997136	4.20823447020138	3.63128255086087	3.86036427893015	4.85942578686344	4.69104217383934	4.67309616349211	4.35468630472225	1.67900865612215	6.48685111227564e-05	0.00140818196640307
Merged-chr6-88065300-4	chr6	88065181	88065381	+	890.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19192.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	4.58219362211232	4.49345324876007	4.77051728801722	4.84242670188288	4.40481910291676	4.49276671854128	4.8147540796184	4.4527405235651	-0.311034911008436	0.398325461755277	0.696585131990538
Merged-chr3-89282185-3	chr3	89282062	89282262	+	889.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1211.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	3.88216509469315	4.05075945838763	3.77643628753705	3.60078180929238	3.9499948771459	3.78041093259637	4.05378612531237	4.23409792969286	0.518798352101057	0.253914683842608	0.565219646993774
Merged-chr6-22358167-4	chr6	22358067	22358267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2086.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	5.14055010404305	4.84651749842219	5.14141529565967	5.29847540060985	5.37315724417083	5.31664092123058	5.43802937455547	5.43555822366648	0.473591128559572	0.114117145634327	0.373665668833645
Merged-chr13-34050675-4	chr13	34050567	34050767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026512, intron 4 of 6)	intron (NM_026512, intron 4 of 6)	13026.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	6.27324415029743	6.63018826334955	6.40030827848907	6.5699741706071	6.24829558597857	6.1072543550615	6.22326741422787	5.97281912022906	-0.50625309013531	0.0282101634929923	0.160869350045482
Merged-chr17-47054776-4	chr17	47054663	47054863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44231.0	NM_001177374	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	5.49985881119238	5.1705394036562	5.65577493568342	5.88964288732051	5.32186763748424	5.4684536632309	5.26733064164019	5.72216905453888	-0.247904505099691	0.430833490188022	0.721309079893587
Merged-chr4-125160494-3	chr4	125160393	125160593	+	874.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32612.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	3.71675985114621	4.27691180123985	3.53775959239935	3.5897191832604	3.61891699762678	4.04777353769982	4.08300502074417	3.76998109021174	0.211466562006853	0.680460774366908	0.868890858294556
Merged-chr14-25459217-4	chr14	25459123	25459323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310666)	promoter-TSS (NM_001310666)	38.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	6.34195630819929	6.31191997861032	5.9536469625807	6.27399237199849	5.77552203445904	5.98644990121957	5.72750621665244	6.03747592363833	-0.550861876024523	0.0256399866860025	0.151049223714138
Merged-chr3-146135593-4	chr3	146135502	146135702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134160, intron 8 of 11)	L2a|LINE|L2	13811.0	NM_134160	171166.0	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	5.30982002520193	5.38010067019184	5.18628563567813	5.55740522062373	5.42203101641061	4.70850629068324	5.28435323007417	5.33630204567566	-0.270939917445325	0.405140202161058	0.702120044059747
Merged-chr18-38434165-4	chr18	38434027	38434227	+	812.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	RMER6A|LTR|ERVK	15220.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	3.97397331928137	3.51031252277366	3.27906788657772	3.68738754440119	3.44277717536645	3.70981371350723	3.78092285704065	3.79526873540439	0.146611335437884	0.778371700052909	0.913734910277541
Merged-chr19-46707532-4	chr19	46707523	46707723	+	880.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020577, intron 1 of 10)	intron (NM_020577, intron 1 of 10)	180.0	NM_020577	57344.0	Mm.28566	NM_020577	ENSMUSG00000003559	As3mt	2310045H08Rik|Cyt19	arsenic (+3 oxidation state) methyltransferase	protein-coding	4.24458352846416	3.87230833523858	4.16777339391561	3.72394205952029	3.67465716979204	3.92013478199047	3.78303866881664	3.5637238126217	-0.775271763750202	0.107982254607598	0.362559597364667
Merged-chr2-137807774-4	chr2	137807676	137807876	+	949.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-448808.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	5.51839474293867	5.23396763257826	5.99355088545935	5.68344053185214	4.82491990925324	5.6670105945238	4.94736553159519	5.007188618386	-0.870573603336145	0.0146108350795272	0.102836411561917
Merged-chr15-6568653-1	chr15	6568553	6568753	+	771.0	f0_c57.idr	Intergenic	Intergenic	-11194.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	3.31293578991066	3.16105316086619	3.43250145721477	3.50737400250342	3.81139852067566	3.48671331623121	3.52819387140003	3.77675704264798	0.974005513480816	0.0622736056050709	0.264063682435562
Merged-chr1-45903527-2	chr1	45903427	45903627	+	880.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	22067.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	3.07614634965531	2.9673343507704	3.4838509691818	2.73879224883514	2.95263585094212	3.12748804043908	2.87431394911758	3.01368453648224	-0.387841756101919	0.544802207546828	0.795521198272179
Merged-chr10-24312348-4	chr10	24312261	24312461	+	910.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88844.0	NM_021509	59012.0	Mm.285934	NM_021509	ENSMUSG00000020000	Moxd1	3230402N08Rik|MNCb-5203	monooxygenase, DBH-like 1	protein-coding	4.69129741233237	4.69496233395668	4.86050395568435	4.62629854835953	4.21551825924832	4.54110957120112	4.25018638156447	4.36214351986873	-0.856497802559103	0.0208203403085493	0.131561570660613
Merged-chr2-129221276-4	chr2	129221164	129221364	+	914.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045838, intron 1 of 4)	intron (NR_045838, intron 1 of 4)	2295.0	NR_045838	329513.0	Mm.473529	NM_177847	ENSMUSG00000056738	A730036I17Rik	-	RIKEN cDNA A730036I17 gene	ncRNA	4.5401727695421	4.89979105910588	4.58104235700831	4.16245585142665	4.57854173198817	4.3990651585266	4.34732835937561	4.76138510788269	-0.063303490744925	0.875866449842973	0.953348901021087
Merged-chr8-4275933-4	chr8	4275840	4276040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011592)	promoter-TSS (NM_011592)	-35.0	NM_011592	21856.0	Mm.195249	NM_011592	ENSMUSG00000002949	Timm44	0710005E20Rik|D8Ertd118e|Mimt44|Tim44	translocase of inner mitochondrial membrane 44	protein-coding	7.21004866816666	7.36536781487214	6.78532430699778	7.2075384147818	7.67040025998735	7.72307038009979	7.44721944872034	7.21748760733321	0.493190426322397	0.0210750258557305	0.132622882980976
Merged-chr11-120360240-4	chr11	120360121	120360321	+	984.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1313.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	4.63509972822849	4.7766746502856	4.16662645705564	4.73409042139448	4.58801219455818	4.23762717287284	4.9239321218312	4.97546692524794	0.226901147517439	0.580035924428007	0.81556313513578
Merged-chr5-138622840-4	chr5	138622741	138622941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183025)	promoter-TSS (NM_183025)	-18.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	7.34852840398225	7.34579109350179	6.64785017059948	7.20451541169889	7.25898017108909	7.57532287772323	7.35226897983675	7.28347039909566	0.269688127677205	0.219134482984599	0.526613773738504
Merged-chr5-136933431-3	chr5	136933318	136933518	+	742.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015555, intron 3 of 3)	(ACGTG)n|Simple_repeat|Simple_repeat	14272.0	NR_015555	66752.0	Mm.135764	NR_015555	ENSMUSG00000097908	4933404O12Rik	AW494809	RIKEN cDNA 4933404O12 gene	ncRNA	3.47315790450103	3.44152155526619	3.47364784488304	2.64320491731179	4.04371967278378	3.53436706395089	3.33923857505657	3.91194629074784	1.3339198919692	0.0441611967761216	0.214343663506823
Merged-chr1-156939555-1	chr1	156939455	156939655	+	546.0	f1_balb.idr	promoter-TSS (NM_001159965)	promoter-TSS (NM_001159965)	71.0	NM_001159968	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	3.20329261836988	3.44754564666421	2.9924999781648	3.14628268790623	3.21937477866706	3.55995114455941	3.83839827700129	3.49371483583454	1.15386059402192	0.0409660482155778	0.204683584580697
Merged-chr5-32196189-4	chr5	32196071	32196271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36537.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	7.01044419619314	7.0130591518024	7.32255879872472	7.05927768124999	7.38742567240214	7.41518709129583	7.3837522226483	7.5149939758786	0.435619019497574	0.0173533406511394	0.11627538682175
Merged-chr16-97533963-3	chr16	97533863	97534063	+	701.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-2118.0	NR_003508	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	3.72097937756243	3.51900480243891	3.22000358239957	3.64610961000943	3.17739632509459	3.20257962033431	2.94139572742803	2.9479008525131	-1.79962458463895	0.00335772192624338	0.0348767458853757
Merged-chr8-125727496-3	chr8	125727403	125727603	+	714.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6700.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	3.82905456827709	3.53919684140482	4.21033936391843	3.68774338280143	3.72657737042497	3.90013234729651	3.54295790260883	3.67026745701314	-0.346517995558032	0.486163159396541	0.759906177756739
Merged-chr15-74988733-4	chr15	74988665	74988865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5335.0	NM_020498	57248.0	Mm.358339	NM_020498	ENSMUSG00000022586	Ly6i	AI789751|Ly-6I|Ly-6M	lymphocyte antigen 6 complex, locus I	protein-coding	4.70636982114826	4.81672153413671	5.07671292491535	5.1608132504343	4.94402519480844	5.36916340086047	4.88176466116928	4.93804774638517	0.14670230853151	0.667504572303361	0.862526891994425
Merged-chr5-64960097-4	chr5	64959997	64960197	+	989.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359180)	promoter-TSS (NM_001359180)	-1.0	NM_011604	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	5.47653020624759	5.55862024971142	4.97703300512102	5.67437171476798	5.82404717490028	5.30927114163	5.52966465088812	5.23113217656805	0.0798247494625919	0.806380883928034	0.925408958667777
Merged-chr11-79869986-4	chr11	79869880	79870080	+	950.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92407.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	4.71692118491127	4.68055157739725	4.93249109293713	4.9013768096958	4.91067397402866	4.49143748551825	4.6160218340763	4.96158150820852	-0.100429844559901	0.774117954535759	0.911716359199097
Merged-chr16-19985522-4	chr16	19985419	19985619	+	936.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-2470.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	4.85955015795357	4.64086304013431	5.01603037839258	4.58513759001643	4.4449953033664	4.60760132649791	4.31535543161347	4.67939432658731	-0.56409785498343	0.127124107326225	0.396640811615016
Merged-chr11-117115056-4	chr11	117114902	117115102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029459)	promoter-TSS (NR_029459)	-170.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	6.88718271735038	7.26605470831309	6.74580280293194	6.24795751472414	7.22237740132628	7.1930191873517	6.78439728260645	7.05921709721935	0.345012461815354	0.191088157272361	0.490417410029363
Merged-chr11-83541156-4	chr11	83541050	83541250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10632.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	6.41561496281219	6.82381456081817	6.03916776135929	5.94235810767853	6.78879625040242	6.67537532174423	6.03103682674248	6.08025392558863	0.138610236731304	0.656622789869188	0.856740299527046
Merged-chr3-51365484-4	chr3	51365389	51365589	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-24845.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	4.99017090119218	5.03291696606799	5.02601600705179	5.01376299611342	5.30019129312382	4.93700514889046	5.27745961517364	5.08982615929187	0.290875089346065	0.339862334241016	0.648946231981688
Merged-chr4-136147807-4	chr4	136147712	136147912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	3990.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	7.88866161901407	8.14011224437282	8.26408850813798	8.0375323623612	8.12209019918859	8.14058464105882	8.13288491133606	8.11721396559885	0.0509718627418722	0.752854570155044	0.902692464272385
Merged-chr6-17770743-4	chr6	17770658	17770858	+	983.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	21588.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	5.28805947723462	5.31626286917867	5.02630363325472	5.28781144310301	5.2685105194306	5.23829410817042	5.52687917071088	4.86859873399109	0.0158977557304189	0.959567209031646	0.985551429297447
Merged-chr16-45005496-3	chr16	45005383	45005583	+	941.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61805.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	3.73179697374055	3.6281152827281	3.82746670794981	4.30608525790227	3.61024675467196	3.30351573090815	3.2523355736893	3.32915149215124	-1.68329599081663	0.00323814642094468	0.033885331387301
Merged-chr3-30793294-4	chr3	30793213	30793413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027016, exon 1 of 8)	5' UTR (NM_027016, exon 1 of 8)	437.0	NM_001357528	69276.0	Mm.26017	NM_027016	ENSMUSG00000027706	Sec62	3100002M17Rik|AI844545|AW545092|Dtrp1|HTP1|Tloc1	SEC62 homolog (S. cerevisiae)	protein-coding	6.89239323901578	6.97542446155141	6.98973653064056	7.19420418025444	7.60507295783837	7.62619290889247	7.25722471344813	7.31931434161554	0.589284281660625	0.00299213603715754	0.0319258358550197
Merged-chr10-59879857-1	chr10	59879757	59879957	+	1000.0	f0_c57.idr	intron (NM_019965, intron 1 of 8)	CpG	266.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	6.33929984251072	6.33330513992592	6.47923457644764	5.99681280456954	6.39877230247096	6.57000095949823	6.47834013755714	6.49090735328334	0.301315329147988	0.191890524139531	0.491386372777654
Merged-chr9-124143031-4	chr9	124142968	124143168	+	904.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21525.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	3.52416974158121	3.40296237993637	3.4032623928047	3.69752105899992	3.77140315654881	3.8067940810658	3.45291891156538	4.00034037053905	0.754476556144496	0.13651393934095	0.411042630338623
Merged-chr18-60211995-4	chr18	60211864	60212064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033767)	promoter-TSS (NM_001033767)	-113.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	5.63821660351974	5.6457614704949	5.61224312901371	5.71823371574129	5.89411987185744	5.84074259736013	5.89492921501737	5.80972683245549	0.330530227597543	0.180481766424453	0.476891812767323
Merged-chr17-26244747-4	chr17	26244613	26244813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001206335)	promoter-TSS (NM_001206335)	-471.0	NM_001206335	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	5.4467484994444	5.04483097657495	4.93937814333009	4.65080075315425	5.11957411856158	4.92082022232277	5.23619883976764	5.07521543789549	0.114188438826949	0.743390535948739	0.89894073126818
Merged-chr11-51916235-4	chr11	51916152	51916352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51379.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	7.59973711001223	7.09280603839888	7.34775300699707	7.42696139361822	7.23273112182487	7.14148832337615	7.30114894735074	7.11222331708885	-0.240730404561214	0.21622296808225	0.522723046059385
Merged-chr16-95732414-6	chr16	95732336	95732536	+	758.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30029.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	3.76553421462974	3.47639639924085	4.00732909111596	3.79730398466587	3.84125448252143	3.88617592761321	3.69736264737226	4.08958104161031	0.319537252072662	0.496215945862629	0.766190495474386
Merged-chr19-47837390-4	chr19	47837294	47837494	+	747.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027559)	promoter-TSS (NM_027559)	-33.0	NM_027559	100048534.0	Mm.29457	NM_027559	ENSMUSG00000044948	Cfap43	4632415N18Rik|4930428C11Rik|4930463G05Rik|AI429486|D19Ertd652e|Wdr96	cilia and flagella associated protein 43	protein-coding	3.8881355540662	4.15238651521713	3.56911703977147	3.66018936033521	3.70983164112831	3.80336149926531	3.77497344327363	3.68256487282656	-0.26975948346831	0.574149262892403	0.812108092694771
Merged-chr11-116866424-3	chr11	116866340	116866540	+	976.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 9 of 12)	intron (NM_178620, intron 9 of 12)	12440.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	3.60516114939726	3.71067501528481	3.3845664172013	4.03515039798043	3.48453830043074	3.22951734392795	3.31182773614276	3.38289818883168	-1.19885447060999	0.030459865824077	0.168928939874265
Merged-chr5-3491392-4	chr5	3491254	3491454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-52479.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	6.32001109949478	6.34369900265434	6.38978689025741	6.11041436350993	6.13635579286394	6.20067632819875	6.23491923852807	5.69057943036107	-0.307207681948658	0.216089589861614	0.522486426388804
Merged-chr18-32348492-4	chr18	32348373	32348573	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR40b|LTR|ERVL	-28744.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	5.10177372359071	5.20623322533679	5.63131101387942	5.53877124528609	5.18464233314037	4.79127106438062	5.11167493844666	5.34903657966449	-0.486677926232623	0.134440248016035	0.4081057574053
Merged-chr7-25315492-5	chr7	25315434	25315634	+	917.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183311, exon 15 of 15)	exon (NM_183311, exon 15 of 15)	-1630.0	NM_001160400	269878.0	Mm.38527	NM_001160400	ENSMUSG00000045039	Megf8	AW049492|Egfl4|b2b1702.2Clo|b2b1702Clo|b2b288Clo|m687Ddg|mKIAA0817	multiple EGF-like-domains 8	protein-coding	3.29200985194297	3.31271513101538	3.40153086599479	2.81381494323337	3.29306959734984	3.08396459835384	3.09908008689611	3.59269445523927	0.235200040759654	0.699756770208901	0.878897269268221
Merged-chr1-171649066-4	chr1	171648959	171649159	+	934.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347184)	promoter-TSS (NM_001347184)	-60.0	NM_001347184	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	4.5799979884727	4.81453842207978	4.53948055152343	4.45992871675905	5.10559961971815	4.53792058475465	4.29268402802326	4.49402674359382	0.13310029385979	0.741165723056632	0.898139463026673
Merged-chr14-50875877-4	chr14	50875764	50875964	+	951.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5310.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	4.61808524939165	4.80481710154915	4.89720876496001	4.79134771056596	5.33947334385507	5.07033817362045	4.83778082251706	4.85769402598833	0.541273355050882	0.107363458748846	0.361382260156614
Merged-chr1-86402468-4	chr1	86402385	86402585	+	819.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13124.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	3.62295377072521	3.78284598450388	3.56351202476649	3.6870059827828	3.86312837010539	3.96284185546107	4.17168912949013	4.18839383726644	1.0893282822356	0.0153383008904204	0.10652404323146
Merged-chr11-121741682-4	chr11	121741591	121741791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39264.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	7.43032721746455	7.5571369685115	6.75471152023513	6.72397683010201	7.36764141441362	7.12199261319991	7.19691474793801	7.1731694151155	0.0737601036712881	0.769441889749964	0.909742530773464
Merged-chr4-70546075-4	chr4	70545985	70546185	+	980.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-11157.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	4.74025454142735	4.70868890277474	4.89210470068321	5.13359527532011	4.86590416246107	4.87615816354525	5.03386312232212	4.88883881539595	0.0324688745253106	0.923123094703645	0.971522463263654
Merged-chr9-64749507-4	chr9	64749399	64749599	+	793.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-11743.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	3.73257055777875	3.49632005041713	3.24052467096739	3.4426928213584	3.5790294567911	3.41828214995094	3.62337761350004	3.42455557976924	0.101885321122022	0.842120680880832	0.940110307562683
Merged-chr1-91458399-4	chr1	91458314	91458514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011066, intron 1 of 22)	intron (NM_011066, intron 1 of 22)	914.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	5.82235048713641	5.85566221606393	5.74723305224093	5.793893242	6.05402463309047	6.04758919959685	6.30855132544456	6.04414995809996	0.49297410601151	0.0386860421561934	0.197421407702588
Merged-chr17-67305010-4	chr17	67304909	67305109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	49450.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	7.49795033473715	7.59606270052645	7.83576910857823	7.65163473427538	8.07004101312245	8.16956563139196	8.20054725145846	7.97325203996231	0.589350093169662	0.000475683174354097	0.00741863555375773
Merged-chr18-24246067-4	chr18	24245967	24246167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013814, exon 4 of 13)	exon (NM_013814, exon 4 of 13)	40073.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	7.98843309338687	7.95839356114425	8.17552945720634	8.30575450361339	7.65979117279934	7.58263731373128	7.54571144980658	7.70084873556565	-0.645332126384588	0.000201148743081531	0.0036571050788762
Merged-chr3-19894767-4	chr3	19894677	19894877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027985)	promoter-TSS (NR_027985)	-94.0	NR_027985	70808.0	Mm.427103	NR_027985	ENSMUSG00000048106	4632415L05Rik	AI662792	RRS1 ribosome biogenesis regulator homolog pseudogene	pseudo	6.89722628133563	6.84056984172475	7.01383629292877	7.24323514035879	6.84865283465693	6.87239022201706	7.10591824920028	6.85262072510194	-0.137306668055387	0.507717241971143	0.773013347050223
Merged-chr3-84443070-1	chr3	84442970	84443170	+	741.5	f0_balb.idr	3' UTR (NM_001205355, exon 12 of 12)	3' UTR (NM_001205355, exon 12 of 12)	36421.0	NM_001205355	229474.0	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	3.29662187724032	3.31724336669658	3.64440798553697	3.50137704685927	2.67103951476422	3.01338662891803	3.03719956299308	3.45556407265599	-1.4395176253397	0.0353751693751303	0.186632090544438
Merged-chr18-50095852-4	chr18	50095749	50095949	+	876.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-32352.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	4.79606575273193	4.38355178035689	4.16690040233988	4.82656919659533	4.45624653642674	4.67228472916094	4.3478958419314	4.61623804363411	-0.132310830055271	0.74128486410254	0.898139463026673
Merged-chr1-55087136-2	chr1	55087036	55087236	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356512, intron 1 of 11)	intron (NM_001356512, intron 1 of 11)	796.0	NM_010477	15510.0	Mm.1777	NM_010477	ENSMUSG00000025980	Hspd1	60kDa|CPN60|HSP-60|HSP-65|Hsp60	heat shock protein 1 (chaperonin)	protein-coding	3.32576556748831	3.39158049768437	3.72827888004707	3.54359117148014	3.71304581861803	3.50724058986909	3.66248046200222	4.06929463175018	0.762485423116599	0.131830630983529	0.404210211448674
Merged-chr12-4505527-4	chr12	4505425	4505625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18588.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	7.1861111825873	6.48009912745706	7.11257480507887	7.30111383455653	6.45714927453567	6.56708552303137	6.92521170845126	6.53065644160017	-0.607629279741027	0.0160283389669766	0.109837406308889
Merged-chr12-33380247-4	chr12	33380128	33380328	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131031, intron 2 of 3)	B3|SINE|B2	14532.0	NR_131031	75836.0	Mm.410807	NR_131031	ENSMUSG00000085664	Atxn7l1os2	4930556N08Rik	ataxin 7-like 1, opposite strand 2	ncRNA	5.37360637583453	5.59213838475461	5.55648225552454	4.96350534890533	4.70359107451683	5.30501001398312	4.84331699067496	5.45188976860879	-0.515369663666551	0.155371536831391	0.440979076070846
Merged-chr11-73199256-7	chr11	73199254	73199454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031251)	promoter-TSS (NM_031251)	-128.0	NM_029031	74637.0	Mm.200905	NM_029031	ENSMUSG00000005951	Shpk	4930431K22Rik|AI194947|AW260459|Carkl	sedoheptulokinase	protein-coding	7.39475938101956	7.41443524057028	7.20640889724261	7.21127326956127	7.51875268396469	7.46064550372939	7.35932072488346	7.24603523804287	0.132091818453822	0.46882566496033	0.747933343931938
Merged-chr2-27373646-4	chr2	27373558	27373758	+	964.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	MTC|LTR|ERVL-MaLR	53950.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	5.80750896385527	5.63560789499059	6.22212476947255	6.60981694635564	5.06842947585398	4.99866625530872	5.57808184929309	5.54698924486612	-1.35607180991806	8.341727733972e-05	0.00174480117066234
Merged-chr15-100421368-4	chr15	100421256	100421456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008732, intron 1 of 16)	intron (NM_008732, intron 1 of 16)	1699.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	7.78296457626352	7.96294086033525	7.56544421759951	7.40493935576728	7.91417515889567	7.9224573856275	7.59086000566744	7.89673541645925	0.194913860725187	0.324826385282485	0.636376122372068
Merged-chr7-4741219-4	chr7	4741093	4741293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358044, intron 1 of 8)	intron (NM_001358044, intron 1 of 8)	1066.0	NM_001358044	232811.0	Mm.247844	NM_146177	ENSMUSG00000059851	Kmt5c	BC024816|Suv4-20h2|Suv420h2	lysine methyltransferase 5C	protein-coding	5.30978726182713	4.87696069294423	4.94240335637277	4.94244546672867	4.94495334931819	5.04405551150477	5.02048086797761	4.82756878697715	-0.117867731172131	0.714813260590309	0.886003030420421
Merged-chr19-47121252-4	chr19	47121142	47121342	+	811.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011053, intron 25 of 35)	intron (NM_011053, intron 25 of 35)	17052.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	4.04715517116272	4.46657989483844	3.65125214334915	3.87470021352792	4.37214810287844	4.2213056059666	4.21077791210281	3.88970141403658	0.367849082421792	0.436674751086088	0.725267689648046
Merged-chr10-121477611-3	chr10	121477510	121477710	+	927.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1360.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	3.64262653832994	4.03535325070181	4.22162716870448	4.404297629109	3.48658249906833	3.70017163883876	3.62975051269829	4.00875883059028	-1.13350240243594	0.0261124438961136	0.152950760704532
Merged-chr18-36196696-3	chr18	36196599	36196799	+	850.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001167891, exon 1 of 10)	exon (NM_001167891, exon 1 of 10)	461.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	3.40644097161637	3.27742658153674	3.40692766967224	2.87932989332668	3.25448211590091	3.40853098205987	3.28063679365575	3.60576599187059	0.511635152353064	0.371583432154636	0.675614006266856
Merged-chr9-119075539-4	chr9	119075458	119075658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019676, intron 5 of 14)	intron (NM_019676, intron 5 of 14)	12703.0	NM_001293648	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	6.77550521182103	6.6433424724319	6.46225350135189	6.72550456079786	6.58793548064335	6.54663252923779	6.84849937002229	6.96416133167745	0.120326756073616	0.579512304376774	0.815384290230806
Merged-chr9-78108595-4	chr9	78108492	78108692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023605)	promoter-TSS (NM_023605)	64.0	NM_023605	71538.0	Mm.28584	NM_023605	ENSMUSG00000001366	Fbxo9	9030401P18Rik|AA986398	f-box protein 9	protein-coding	6.39874160358241	6.18682272033045	5.90053330452491	6.49171280841732	6.1491689101178	5.92411070420913	5.94155020788442	6.29236742999359	-0.287510657345997	0.264054172789985	0.576166026946396
Merged-chr4-43383057-1	chr4	43382957	43383157	+	1000.0	f1_c57bl6.idr	intron (NM_001037709, intron 1 of 11)	intron (NM_001037709, intron 1 of 11)	1075.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	3.04238291521056	3.09149316525612	3.18677097203864	3.24354982578969	4.01167292568947	3.55411618085784	3.72211291151026	3.59477739164444	1.97135230057911	0.000364769044102714	0.00594956365494663
Merged-chr2-25332623-4	chr2	25332528	25332728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027448)	promoter-TSS (NR_027448)	-57.0	NR_027448	100272219.0	Mm.382103	NR_027448	ENSMUSG00000097345	AA543186	-	expressed sequence AA543186	ncRNA	8.21799381452788	8.27636421051675	7.67712514591335	7.6556808147949	8.24530955029492	8.23888519869082	7.81948493961371	8.11902864386389	0.170421766084174	0.428017459530085	0.719110955763866
Merged-chr11-40835824-4	chr11	40835745	40835945	+	980.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-80559.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	5.02330822261707	4.95400034777727	5.30978107157258	5.72915297854671	5.11545386445901	4.92885216855738	5.19566360471883	4.94766776634274	-0.483776928611639	0.167257674939179	0.458811239575143
Merged-chr15-74930966-4	chr15	74930873	74931073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4-int|LTR|ERVK	-24078.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	5.73826317245157	5.55795403199977	5.43959994551155	5.86236621940758	5.73208973607318	5.83884200505719	5.583498572094	5.78277552767223	0.0993678432468533	0.712067222637607	0.884715833326134
Merged-chr8-69902430-3	chr8	69902329	69902529	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_032004, exon 1 of 1)	exon (NM_032004, exon 1 of 1)	129.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	4.18469054551042	4.27025587187854	3.87887884837509	4.08854252195067	3.90443107822584	4.05911546395396	4.2536888644242	4.63592596996787	0.313384501870803	0.480551344876928	0.75600177940663
Merged-chr18-20803210-4	chr18	20803114	20803314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-56810.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	5.80080236407218	5.57202537080628	5.67644296877782	6.20468697238437	5.44030930717843	5.49525887686646	6.24120650009728	5.84451701384826	-0.094549630940274	0.76789007026259	0.909224339615052
Merged-chr4-136143371-2	chr4	136143271	136143471	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008321)	promoter-TSS (NM_008321)	-451.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	7.36155139997198	7.33399969788241	7.05047829095935	7.01264510295962	7.38753223109888	7.48925402436012	7.08847314091494	7.38695722070365	0.20905038467317	0.29470806411099	0.606833640805257
Merged-chr11-101974344-4	chr11	101974231	101974431	+	782.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028207, exon 3 of 3)	3' UTR (NM_028207, exon 3 of 3)	-7316.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	4.14084986659851	3.74319966491109	4.39705682026513	4.58957285139915	3.84675792611739	4.16869642751922	4.02661635403317	4.39413466332624	-0.362062965517422	0.447874634859944	0.73332468018769
Merged-chr18-44607721-2	chr18	44607616	44607816	+	665.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-53949.0	NR_026853	626275.0	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	2.86267967529859	2.81192889578422	2.86306046833314	3.0156655494117	2.39283484448489	2.5561571818099	2.7308393527189	2.86152045009851	-1.25198458949758	0.0797245378393005	0.305763270028097
Merged-chr7-46714669-3	chr7	46714619	46714819	+	751.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011315, intron 2 of 3)	intron (NM_011315, intron 2 of 3)	957.0	NM_011315	20210.0	Mm.14277	NM_011315	ENSMUSG00000040026	Saa3	AV098916|Saa-3|l7R3	serum amyloid A 3	protein-coding	3.56048424650464	3.5272499764472	3.56096406772076	3.42333506988181	3.51041218641192	3.73323222223188	3.74957311953866	3.76376867012204	0.5596246239835	0.237900616489464	0.54819450317196
Merged-chr1-118507457-4	chr1	118507421	118507621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 16 of 39)	ID4|SINE|ID	-48256.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	4.96368479271632	4.8400936464209	4.89175036348475	5.12789737779723	5.22193528823575	4.90987456444453	5.10526356882536	5.18728040490786	0.27676224392844	0.381144892225221	0.683465744746471
Merged-chr7-123025317-4	chr7	123025204	123025404	+	985.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54740.0	NM_175023	19647.0	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6, ubiquitin ligase	protein-coding	5.02582750995116	4.97980061228453	4.8004984424836	5.06912869422066	5.20592522553062	5.13069051794718	5.22198134254763	5.24445138879174	0.415495889143402	0.16892703946149	0.461434405627041
Merged-chr6-125353801-2	chr6	125353701	125353901	+	992.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	4078.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	3.25484593088742	3.33063352749333	3.19622568174036	3.25122291619722	3.12352385517702	3.0381244955254	3.40322746378954	3.51160782593171	0.0828834043762398	0.881165793881663	0.955322489265647
Merged-chr13-49187632-4	chr13	49187542	49187742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013610)	promoter-TSS (NM_013610)	95.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	8.45368698586596	8.90632953138477	8.47031251031331	8.14506347562771	8.54429789264949	8.95240577166604	8.55590966517614	8.30303078661889	0.111455648808135	0.604656891195908	0.828509474255204
Merged-chr13-44734515-4	chr13	44734390	44734590	+	895.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	3219.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	4.20412210731452	4.64400460701161	4.11185176098365	3.30814159236682	4.14046794548028	4.28790406464781	4.22903013752136	4.00942762026057	0.0247854591451536	0.962871334728693	0.986716902231301
Merged-chr3-87357855-4	chr3	87357753	87357953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009690)	promoter-TSS (NM_009690)	-28.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	6.61983148671556	7.16645527341751	7.13222175333054	7.32748239848879	6.89495769386254	6.89735921622304	7.12983397028116	7.17178187138584	-0.0998469359263095	0.656322359714023	0.85658929556191
Merged-chr19-34550659-4	chr19	34550555	34550755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355262)	promoter-TSS (NM_001355262)	-39.0	NM_008332	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	5.43588824244115	5.48402211126813	5.31000021292085	5.64909862321446	5.49381370918562	5.58383792482451	6.13927229762792	5.84217715729269	0.495982598370215	0.092080474353352	0.331880271178644
Merged-chr4-120570089-4	chr4	120570014	120570214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355491)	promoter-TSS (NM_001355491)	162.0	NM_016748	51797.0	Mm.1815	NM_016748	ENSMUSG00000028633	Ctps	Ctps1	cytidine 5'-triphosphate synthase	protein-coding	6.62410947517575	6.97743509498958	7.67338614041482	6.99874629657644	6.95875595706443	7.06388074586976	7.08972531419701	7.08573101741481	-0.102915251878983	0.682225107480446	0.869682098720609
Merged-chr2-61607106-2	chr2	61607006	61607206	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_149323, intron 2 of 9)	intron (NR_149323, intron 2 of 9)	14009.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	2.92969844492439	2.83413194750725	2.80151938849606	2.77350875645715	3.03359740612504	2.97495374271763	3.08875999001278	2.92859855386051	0.778321470747645	0.182677408394245	0.479279597899276
Merged-chr17-31289277-3	chr17	31289156	31289356	+	683.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6227.0	NM_153062	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	3.84723861783263	3.68408107422116	3.19996904240346	3.66796336141504	3.52257306462343	3.44608813856099	3.38256956605859	3.50823202045279	-0.506411535979266	0.338560933158999	0.648064797414472
Merged-chr7-92965299-4	chr7	92965199	92965399	+	858.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90046.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	3.90143551640044	4.06814624898199	3.4185233684479	3.95652287743672	4.28106035806785	3.86005477795116	4.02782936489889	4.04321068893863	0.546852525467369	0.255969371527747	0.567554790853326
Merged-chr14-20370976-4	chr14	20370885	20371085	+	876.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024512, intron 7 of 13)	PB1D10|SINE|Alu	17925.0	NM_134081	108671.0	Mm.2871	NM_134081	ENSMUSG00000021811	Dnajc9	5330419I01Rik|AU020082	DnaJ heat shock protein family (Hsp40) member C9	protein-coding	4.19868470729152	4.46775734726229	4.61156641990178	4.86621413439961	4.02949603173225	3.99424234634487	4.40160098735743	4.09595604074987	-1.0487771169002	0.0139968731608298	0.0999840920274248
Merged-chr13-24614141-4	chr13	24614042	24614242	+	863.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286101)	promoter-TSS (NM_001286101)	-464.0	NM_001286101	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	4.01300344110067	4.07205924989555	3.70474614487391	3.49143868822638	4.05341471698855	3.99069234446023	3.6906255122507	4.14132869153178	0.41501291801344	0.388456482523036	0.688981838974675
Merged-chr1-156673744-4	chr1	156673634	156673834	+	961.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023141, intron 1 of 5)	intron (NM_023141, intron 1 of 5)	605.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	5.07090475462511	4.42061516248177	5.07178568789706	4.56331833918863	4.62298932259302	4.87327739134785	4.51016212362828	4.80861040364998	-0.193927970943029	0.612261613430438	0.832715570504731
Merged-chr5-38505533-4	chr5	38505424	38505624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3372.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	6.51521023776144	5.69436575418692	6.56422935348199	6.46629116320106	6.24613650966411	6.36191183491029	6.73157804610099	6.99153493584554	0.37958874219504	0.197240240827622	0.498574633398533
Merged-chr17-34638106-4	chr17	34638012	34638212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6771.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	5.85852368517588	6.09567808637438	5.68489186028276	5.68927965511193	5.74987417675298	5.98738511620793	5.91912631303763	5.96676135174947	0.105148139589313	0.683601517428725	0.870394242877558
Merged-chr2-26566339-2	chr2	26566239	26566439	+	995.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14717.0	NM_178444	353156.0	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	3.53714589158111	3.02685723156129	3.13619889447528	2.94655539472527	3.17153112177644	2.91088824992017	2.93692104547314	3.19213966053296	-0.445147434777348	0.47138238752931	0.749827406573597
Merged-chr13-25007394-2	chr13	25007294	25007494	+	792.416687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013389, intron 2 of 10)	intron (NM_001013389, intron 2 of 10)	12923.0	NM_001013389	380836.0	Mm.387097	NM_001013389	ENSMUSG00000021339	Mrs2	Gm902|HPT|Mrs2l|RPT	MRS2 magnesium transporter	protein-coding	3.86152779903125	3.6122988953139	3.76085900612351	3.30292889020735	3.3434744100019	3.77329594313941	3.89206914931522	4.338827868431	0.68959439353167	0.206968095563067	0.511041109865179
Merged-chr9-14381019-4	chr9	14380920	14381120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028013, exon 1 of 2)	5' UTR (NM_028013, exon 1 of 2)	222.0	NM_028013	71946.0	Mm.41423	NM_028013	ENSMUSG00000037419	Endod1	2210414F18Rik|2310067E08Rik|C85344	endonuclease domain containing 1	protein-coding	6.76560297173825	6.56848327853093	6.8243708593428	7.22144688243619	6.60534065891697	7.05605718060895	6.95973710255423	7.16186389221607	0.10121298406377	0.676467636909345	0.867170024268651
Merged-chr12-91758298-3	chr12	91758230	91758430	+	809.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	28106.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	3.10493787602042	3.00301417871447	3.47747243364293	3.3723657484621	2.96519143664588	2.941278268904	2.82575474830874	3.47521735463809	-0.683247745252728	0.290953546888385	0.603238545744905
Merged-chr2-51972966-4	chr2	51972870	51973070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001141948, exon 1 of 8)	5' UTR (NM_001141948, exon 1 of 8)	238.0	NM_001141949	64685.0	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	6.41755405640362	6.19030185601598	5.94461479298521	6.3256930389484	6.18434232096999	6.31961200752665	6.24744559538824	6.0764537601682	-0.0462898358060512	0.844612649204948	0.941125889580383
Merged-chr3-38202444-2	chr3	38202363	38202563	+	1000.0	f0_balb.idr|f0_c57.idr	TTS (NR_040541)	TTS (NR_040541)	5656.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	5.5903514885514	5.30553777397397	5.36511321858259	5.48642383518135	5.74392150440209	5.86335762620558	5.5630652172246	5.26516928828877	0.321630747339295	0.262449476632569	0.57424810151607
Merged-chr4-134920340-4	chr4	134920249	134920449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3276.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	7.32247255171163	7.64620749691764	7.36503759015935	7.428833572748	7.29088601743731	7.52168482043199	7.37806856277246	7.42905127169419	-0.0619432198714693	0.733216599484886	0.894434219693058
Merged-chr19-14598357-4	chr19	14598266	14598466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302950)	promoter-TSS (NM_001302950)	-183.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	9.52808442696652	9.70704920747061	9.70072747450015	9.40191797658387	9.49701325141011	9.65444576046633	9.57508024404279	9.1706492980895	-0.124757953436112	0.449441105862952	0.734617277148016
Merged-chr7-45452962-3	chr7	45452857	45453057	+	874.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 14 of 15)	B1_Mus1|SINE|Alu	6929.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	3.64446854112849	3.36084287194971	3.17720851156718	2.86971325646288	3.20385343876315	3.08741948563369	3.03618518811893	3.55265578055816	-0.199078667299678	0.750280746952608	0.901687292743844
Merged-chr4-33292929-3	chr4	33292815	33293015	+	855.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17396.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	3.58436077969717	3.70387405496252	3.6865715924403	3.85223554134948	3.32262869257962	3.18510493311272	3.57048648710362	3.58284796983404	-0.971984842331714	0.0617313915011701	0.26285356242146
Merged-chr17-43032643-4	chr17	43032557	43032757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 1 of 5)	intron (NM_178589, intron 1 of 5)	16102.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	6.10291212825003	6.14026214762191	6.50942838010902	6.62485217138929	6.26690124598553	6.09552704735806	6.32629501703962	6.60977751317421	-0.0597716095542883	0.814906065245358	0.92862301029334
Merged-chr1-20820380-4	chr1	20820285	20820485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008563)	promoter-TSS (NM_008563)	-73.0	NM_008563	17215.0	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	8.65358126697995	8.6848929211975	8.36235972234791	8.78291304342131	8.67852923994115	8.76468431328151	8.67990326982886	8.45879272815225	0.018306548454501	0.912003163269653	0.96710160841083
Merged-chr3-121594797-2	chr3	121594697	121594897	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48688.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	2.67946663299915	3.14387556940746	2.82444398421438	2.82087895516261	2.78715818133046	3.18657577754616	2.94455844111747	3.23227303901616	0.70201021415752	0.27133449719606	0.583113981338679
Merged-chr5-31697856-4	chr5	31697764	31697964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181282)	promoter-TSS (NM_181282)	-186.0	NM_181281	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	6.79691039675003	7.29979493941686	6.97759587313391	6.7460107746449	6.97985747001941	7.21708139682211	7.1099899838668	7.27910147917152	0.245532083897294	0.255176911185617	0.566786412072677
Merged-chr1-162563433-4	chr1	162563345	162563545	+	987.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7070.0	NM_001356527	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	5.18351019200475	5.30495412394359	5.86039644642132	6.10617546130159	6.39513326659017	5.83257752889249	6.51163449632237	6.26220024507279	0.918763101562754	0.00554014563408642	0.051253187690231
Merged-chr2-151994398-3	chr2	151994297	151994497	+	790.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-2114.0	NM_027172	69698.0	Mm.258262	NM_027172	ENSMUSG00000027463	Slc52a3	2310046K01Rik|RFT2	solute carrier protein family 52, member 3	protein-coding	3.79758805890173	3.51339876802806	3.75011836362514	3.87367347813774	3.34347753239579	3.59417242797323	3.5801213173829	3.74788663399594	-0.562885593059378	0.257064524934089	0.568810942638566
Merged-chr16-24946665-3	chr16	24946524	24946724	+	878.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-113015.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	2.97179616222425	3.19398308163049	2.97215836168107	2.99725822396368	2.7720562446973	2.95109285686945	2.96168484171194	2.97069352544307	-0.553839036371967	0.355575025897465	0.662239645411996
Merged-chr4-111721650-4	chr4	111721565	111721765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026470, intron 1 of 12)	intron (NM_026470, intron 1 of 12)	1655.0	NM_026470	67946.0	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	6.75430415164784	6.23043214138246	6.52336603410889	6.79479992355871	6.83668047554903	6.5948008245664	6.98617204082097	6.64773141984123	0.251029941893442	0.282887164121226	0.595041976860567
Merged-chr7-101412890-4	chr7	101412747	101412947	+	987.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027180)	TTS (NM_027180)	-8844.0	NM_001008548	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	5.24342317850762	5.05124652935958	4.81666051103081	4.74858149332659	4.70541459387455	5.23677280164875	4.90516941009297	4.99519917340673	-0.00675428057617636	0.984405271444932	0.994312737627793
Merged-chr15-68068445-4	chr15	68068319	68068519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	190437.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	6.7749578647736	6.87308654562293	6.64362106019948	7.15705000009494	6.6300236901467	6.11746286538985	6.68470588583106	6.65430576991293	-0.489251469247116	0.0407508093197165	0.204095261509154
Merged-chr2-35271960-4	chr2	35271879	35272079	+	879.5791630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206367, intron 2 of 17)	intron (NM_001206367, intron 2 of 17)	5235.0	NM_001206369	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	4.74419614402112	4.91440722704935	4.63487477648273	4.20409304008527	4.59186708135434	4.55843623771179	4.65033910369837	4.17789432453616	-0.287275638663959	0.481683231820703	0.756755039529514
Merged-chr2-90535271-3	chr2	90535166	90535366	+	783.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	ID4|SINE|ID	45381.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.65582344415739	3.25004880093942	3.65631959656708	3.76131798909911	3.81663409052519	4.07688838108094	3.79728673955864	3.90628943993204	0.869919060670835	0.0784803102268248	0.303220863572603
Merged-chr13-44952511-3	chr13	44952415	44952615	+	791.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 7 of 9)	ORR1D2|LTR|ERVL-MaLR	49581.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	3.14889567668426	3.13852978905861	3.02855612455481	3.13611844966601	3.12258611224874	3.19944533023929	3.13762924311865	3.08877811682945	0.0820176866385699	0.881169203139224	0.955322489265647
Merged-chr4-43669287-4	chr4	43669187	43669387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175517)	promoter-TSS (NM_175517)	316.0	NM_001355718	242409.0	Mm.171489	NM_001085508	ENSMUSG00000078716	Tmem8b	4930500O05Rik	transmembrane protein 8B	protein-coding	6.8283996884296	6.81406932586392	7.21060521185109	6.68438825248084	6.80488702672642	6.52297202903402	6.99906437282086	7.06455947497925	-0.0344863659635686	0.880403221877996	0.95517036814656
Merged-chr7-63912619-2	chr7	63912523	63912723	+	808.0	f0_balb.idr|f0_c57.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-4234.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	4.88534972455455	4.66590642203578	4.54650233241705	4.74905526941142	4.32204395471433	4.72216170123821	4.68651409274661	4.94725025352133	-0.0860261900916811	0.814980173135318	0.928656769180015
Merged-chr5-92318353-4	chr5	92318261	92318461	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-8337.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	5.08484440817424	5.43150037024414	5.24795265662307	4.80612695080775	5.50192610991196	5.1176414471048	5.36459181934643	5.08224850357789	0.255061941848018	0.439838164302369	0.727425871224001
Merged-chr19-41989960-4	chr19	41989877	41990077	+	968.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	ID_B1|SINE|B4	8214.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	4.96136558207449	4.862437904323	4.7351058621531	5.11347597924849	4.80493357363618	5.02828897067434	5.24195958169531	4.92372943412451	0.123441297259791	0.710912329780657	0.884240356833917
Merged-chr6-143115230-4	chr6	143115160	143115360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153819, intron 7 of 8)	intron (NR_153819, intron 7 of 8)	-15108.0	NM_001109688	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	6.30344048684008	6.55587999876639	7.25993733537549	7.42460154755544	6.62387444356154	6.2867174249121	6.67876819899548	6.61656817035468	-0.602242765069332	0.0425764466703428	0.209581528184532
Merged-chr8-22658714-4	chr8	22658612	22658812	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010546)	TTS (NM_010546)	-5275.0	NM_011130	18970.0	Mm.123211	NM_011130	ENSMUSG00000031536	Polb	A430088C08Rik	polymerase (DNA directed), beta	protein-coding	5.20051474102199	4.99051086307612	5.25943114613691	5.26802351191082	5.07126438432453	4.87732896018155	4.8011060164636	4.93486387794241	-0.491705290251762	0.118131328165332	0.380170508884494
Merged-chr12-17658610-4	chr12	17658504	17658704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32205.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	6.68486367277477	7.1744530434483	7.41506890827011	6.32833305113781	6.28103924045108	5.94109504260708	6.12784543397197	5.62788533559806	-1.37703759947741	1.01309492646497e-05	0.000278313715827287
Merged-chr5-66051815-4	chr5	66051733	66051933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	MIR|SINE|MIR	46346.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.24824688013716	5.68743953006611	5.38513012440244	5.92773688351231	5.82750498726742	5.89854737865763	5.91971599786848	5.81526018935109	0.405854924381815	0.162977059827543	0.452549687022461
Merged-chr2-166293159-4	chr2	166293069	166293269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033467, intron 2 of 2)	intron (NR_033467, intron 2 of 2)	19261.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	6.5947117021265	6.8531566147339	5.92324081135324	6.26343300914373	6.29195880870123	6.33187914469269	6.2807623880061	6.34534612999268	-0.210679094649274	0.429676756101363	0.7205774241418
Merged-chr17-73972480-4	chr17	73972352	73972552	+	989.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22256.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	4.44372462520254	4.39788157286693	4.49554929326303	5.09880408458558	5.10564213058796	4.90708329352921	5.39967026220666	5.76352587331285	1.27383928379701	0.00214967263263837	0.0247326437941588
Merged-chr15-84916794-3	chr15	84916692	84916892	+	909.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-B4-int|LTR|ERVL	-6636.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	3.58505453861317	3.84839550174693	3.96556337574266	4.38649842036486	3.66130498614578	3.70343999474247	3.90095965563107	4.09681466728657	-0.403276793824056	0.427766019656774	0.71887209364609
Merged-chr1-151428532-4	chr1	151428415	151428615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025819)	promoter-TSS (NM_025819)	-27.0	NM_026876	98685.0	Mm.289373	NM_026876	ENSMUSG00000053286	Trmt1l	1190005F20Rik|AW226554|C1orf25|Trm1-like|Trm1l	tRNA methyltransferase 1 like	protein-coding	9.02536885946527	9.18935725867593	8.96997546426043	9.1378909056708	8.81419665073378	9.08457929413367	9.04755937029724	8.92006327238954	-0.146572908757385	0.324992751294849	0.636488090877592
Merged-chr13-17982858-4	chr13	17982763	17982963	+	972.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10488.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	4.94122036705068	4.68841413277626	5.71258895344966	5.19160178296808	5.04301980779993	5.26047496901891	5.15739087123195	5.08179382215262	-0.0974075343463051	0.786974316760505	0.917257197669312
Merged-chr4-145026769-3	chr4	145026677	145026877	+	941.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 65 of 69)	intron (NM_001276465, intron 65 of 69)	133640.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	3.5555881053796	3.72090940305293	4.05253920238041	4.36770705011789	3.75283060337939	3.6734479263994	3.54322242201641	3.42783248502444	-1.0839660212829	0.0427256758490334	0.210104820772217
Merged-chr13-37779955-1	chr13	37779855	37780055	+	582.0	f0_balb.idr	Intergenic	Intergenic	-46083.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.84544215867921	3.77934892238461	3.98543735181562	3.53308867160092	3.8210774820538	3.69158631061287	3.61922085381354	4.02608066687169	0.050260386227203	0.916077648080764	0.968912323381988
Merged-chr15-6554806-4	chr15	6554732	6554932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25015.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	5.475736627572	5.26709993081837	5.31373890229286	5.23156173241861	4.9370030713794	5.33414722339911	5.16651658744881	5.01809823093621	-0.381494648211616	0.20743454343728	0.511447929091922
Merged-chr2-80062845-3	chr2	80062730	80062930	+	812.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	L1_Mus3|LINE|L1	-23928.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	3.87461705165363	4.11012646855568	4.54825670734588	4.5195195588823	3.82189571162916	3.61482288846857	3.9646660237452	4.07707555066179	-1.11115075422411	0.0199265705576425	0.127738233302862
Merged-chr3-41563720-4	chr3	41563617	41563817	+	941.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130185)	promoter-TSS (NM_001130185)	-34.0	NM_001130185	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	5.07298066198306	4.94999289757592	4.68371607754992	4.8681368176137	4.7409238152631	4.68620136040578	4.98671992085302	4.90785632874697	-0.133373580712151	0.688253215635426	0.87268021244394
Merged-chr16-85143696-2	chr16	85143610	85143810	+	723.166626	f0_balb.idr|f1_balb.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	29997.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	3.72969774794339	3.70765995580844	3.99702552538711	3.66634969019347	3.28276960674813	3.37307489297968	3.38123035550877	3.8232463781626	-0.958988716704623	0.0679858869525056	0.278337021016473
Merged-chr15-72972005-4	chr15	72971896	72972096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029640, intron 8 of 21)	ORR1D2|LTR|ERVL-MaLR	83816.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	6.52882761236242	6.32558793921799	6.75417947394903	6.83096699916791	6.65400472267765	6.35147636214552	6.44676871148421	6.40525956829162	-0.227747250505321	0.326305568357722	0.637834460650692
Merged-chr10-81384824-4	chr10	81384730	81384930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133964, intron 1 of 4)	intron (NM_133964, intron 1 of 4)	402.0	NM_133964	102115.0	Mm.294975	NM_133964	ENSMUSG00000078440	Dohh	1110033C18Rik|AI585913|AL022869|Hlrc1	deoxyhypusine hydroxylase/monooxygenase	protein-coding	5.31642288126495	5.77561638584163	5.31733100987781	5.23819205535907	5.6250991485265	5.46170615915069	5.22800714386903	5.37414283972007	0.0222021490823149	0.941826377362342	0.97898049638905
Merged-chr17-34657500-4	chr17	34657394	34657594	+	899.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10348.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	3.59854128369124	3.77636343357414	3.9290491193302	3.97269673697715	4.06070540325049	3.83721513657113	4.0911399249391	4.02022357841203	0.468964298579679	0.293506529871895	0.606008746948365
Merged-chr11-80932554-3	chr11	80932455	80932655	+	841.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034013, intron 3 of 9)	intron (NM_001034013, intron 3 of 9)	74166.0	NM_029367	75622.0	Mm.26988	NM_029367	ENSMUSG00000053184	Spaca3	1700025M08Rik|ALLP17|Lyc3|SLLP1|mSLLP1	sperm acrosome associated 3	protein-coding	4.00106156489519	3.49032716823441	3.62045764451965	3.6658759118213	3.53368054435905	3.6211001856142	3.89885811229432	3.67275424553069	-0.055601789186387	0.909691360802427	0.966446086815564
Merged-chr2-112239412-4	chr2	112239288	112239488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207206)	promoter-TSS (NM_207206)	-453.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	6.80113582408087	6.48164399634627	6.43663143252971	6.86669814567439	6.66904650779902	6.97824632577651	6.80829175078413	6.8112093125927	0.202645109921079	0.358297670318034	0.664320653179664
Merged-chr7-122132975-4	chr7	122132861	122133061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289845)	promoter-TSS (NM_001289845)	-15.0	NM_001289845	233826.0	Mm.38348	NM_172744	ENSMUSG00000044702	Palb2	BC066140	partner and localizer of BRCA2	protein-coding	8.0925334251926	8.18094284048284	8.15601731700859	7.80384354870578	8.19783205215438	8.21273938702082	7.94925409323258	8.1261328648327	0.0875465371679167	0.615415479165541	0.834461661846382
Merged-chr9-113781075-4	chr9	113780997	113781197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 6 of 39)	Lx9|LINE|L1	-12233.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	5.88714448544245	5.82373004466301	5.66763694760795	6.05880627755551	6.163887097014	5.73356055124955	5.61225171007107	5.66364951695041	-0.0806426708753487	0.772554298988399	0.910940763350478
Merged-chr6-146796061-4	chr6	146795979	146796179	+	856.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9451.0	NM_001289680	272322.0	Mm.333500	NM_172309	ENSMUSG00000040187	Arntl2	4632430A05Rik|BMAL2|CLIF|MOP9|bHLHe6	aryl hydrocarbon receptor nuclear translocator-like 2	protein-coding	3.77529859959905	3.68651562939569	4.11584522978379	3.94986962782294	3.64020304373838	3.89702355961251	3.91579413913271	4.34540996842771	0.212917445988563	0.656061181790381	0.856430271691361
Merged-chr16-30262304-3	chr16	30262207	30262407	+	748.233337	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027904, intron 1 of 1)	MIR|SINE|MIR	5225.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	3.42157235713378	3.35988890551052	3.54015276395099	3.24104042186196	3.55015857115177	3.91792278305927	3.73198704073856	3.83894483104461	1.2156499345529	0.0129380605896591	0.0947154391351788
Merged-chr18-60744801-4	chr18	60744714	60744914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	1932.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	7.86399433373406	8.22954539166384	8.26242103414796	8.42325742909438	8.01540889830858	7.84427400216806	8.20105642425373	7.94156123734467	-0.268514064752991	0.150204107661242	0.432790043591146
Merged-chr16-21499333-3	chr16	21499216	21499416	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 21 of 46)	intron (NM_001081366, intron 21 of 46)	76198.0	NM_001285894	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	4.02487244695778	4.44476341857723	4.38462961202654	5.03602539815676	3.79424155930951	3.65612669715098	3.90201272564194	3.85860146309935	-1.93316644863157	9.26993193233388e-05	0.00190700718211443
Merged-chr7-83650864-4	chr7	83650756	83650956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 15 of 18)	intron (NM_001360088, intron 15 of 18)	4639.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	6.77024610261391	6.33820969552751	6.19299411070421	6.31955331264566	6.26252648581361	6.15480534034332	5.99229762612948	5.87468825427131	-0.502986558896423	0.0471855738564935	0.223622806179096
Merged-chr11-74838596-4	chr11	74838492	74838692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 4 of 5)	CpG	7668.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	8.33461184447386	8.53146338240037	8.02829217193979	8.17678509436416	8.40309930675585	8.44068185977639	8.35023982866935	8.38387867760905	0.144601070110737	0.394705531149843	0.693696530342229
Merged-chr6-127142284-3	chr6	127142184	127142384	+	857.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009829, intron 3 of 4)	intron (NM_009829, intron 3 of 4)	-7105.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	3.84528345536931	3.55868660539064	3.75396928296615	3.1969322605455	3.76556712530973	3.48338414468058	3.58761206154395	3.48838918981688	-0.0315754886904196	0.95290736645736	0.983276598943455
Merged-chr10-20879736-4	chr10	20879624	20879824	+	954.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72823.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	3.95184817361995	3.75642109883154	4.25972361585324	4.43641291787774	4.38361082131634	4.24225656342699	4.28504608900714	4.91674719473624	0.812093141232968	0.0817019802833509	0.310197273474577
Merged-chr3-116422926-3	chr3	116422834	116423034	+	906.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173553, intron 1 of 13)	intron (NM_001173553, intron 1 of 13)	1098.0	NM_001080818	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	3.69392079505773	3.85333387540514	3.64459117234683	3.71063254235396	3.42893214243376	3.53763708194225	3.41099824027624	3.2952146750354	-1.02575993774031	0.0404509196252757	0.203222473744177
Merged-chr5-43883131-4	chr5	43883020	43883220	+	871.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	14311.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	4.82598213606397	4.48269430961831	4.10709082621495	4.97551425088704	4.31572751335649	4.6271947648866	4.43286643894053	4.45016571746984	-0.439218773168818	0.292054374460215	0.604488172040016
Merged-chr5-148399917-4	chr5	148399816	148400016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007513)	promoter-TSS (NM_007513)	-12.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	7.13494192692227	7.24945656137639	6.99877731053228	7.16003895034926	7.51296672674233	7.1895845688739	7.55889335297452	7.30739595516124	0.357090225966125	0.0591717823426685	0.256300632591055
Merged-chr1-171150577-4	chr1	171150457	171150657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008623)	promoter-TSS (NM_008623)	46.0	NM_025321	66052.0	Mm.198138	NM_025321	ENSMUSG00000058076	Sdhc	0610010E03Rik|AI316496|AU019277	succinate dehydrogenase complex, subunit C, integral membrane protein	protein-coding	6.79782895975359	7.07375724329203	7.20821826579748	6.52819331562428	6.92336021275336	6.69088948637333	6.80627628638255	6.83616890739208	-0.132831859133722	0.566504272476702	0.807900514541786
Merged-chr9-23670843-4	chr9	23670752	23670952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-427166.0	NM_175678	319239.0	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding	6.90311513432402	6.5298072158153	6.98938028945757	7.07273851584677	6.49179365674095	6.33279647167946	6.76481004055069	6.33819337845225	-0.572134968827908	0.0142988995294378	0.101392844152805
Merged-chr13-73765438-4	chr13	73765336	73765536	+	938.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 1 of 24)	intron (NM_001360694, intron 1 of 24)	1739.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	5.01884751073157	4.53389238150871	4.52672904880405	5.38822478457881	4.65892886339002	4.66014773522223	4.86358596067595	4.88391658111647	-0.345712239513077	0.38466098162789	0.686147496244354
Merged-chr1-37478073-4	chr1	37477947	37478147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 5 of 15)	L1MC|LINE|L1	10558.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	5.88416099346963	6.10502338575724	5.9530660615135	5.99653948637185	5.9675746093452	5.68918238958944	5.90065542214627	5.97064242308193	-0.154449111736332	0.525748699261949	0.783367294725902
Merged-chr8-110075633-1	chr8	110075533	110075733	+	675.0	f0_balb.idr	Intergenic	Intergenic	-4101.0	NM_175480	234725.0	Mm.87487	NM_175480	ENSMUSG00000044676	Zfp612	B230354B21Rik	zinc finger protein 612	protein-coding	3.26164587050613	3.17853936376252	3.15494863317269	3.34103431604503	2.74614270059663	2.79604967901945	2.83229713529667	3.15320458773517	-1.5385515496486	0.0156240102735682	0.107960530750637
Merged-chr19-53944667-4	chr19	53944568	53944768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195338)	promoter-TSS (NM_001195338)	-41.0	NM_001195338	100503572.0	Mm.375091	NM_001195338	ENSMUSG00000084957	Bbip1	2310002J21Rik|2610002B11Rik|4930560M04Rik|Ncrna00081	BBSome interacting protein 1	protein-coding	9.26907567599023	9.22440492693225	9.19470880258547	9.15844752748185	9.1142889645977	9.51472795214761	9.32617124500942	9.14781088046344	0.0887263917174905	0.561490350038924	0.80494560024742
Merged-chr14-64949961-4	chr14	64949876	64950076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253731)	promoter-TSS (NM_001253731)	-69.0	NM_153414	210925.0	Mm.71332	NM_153414	ENSMUSG00000021975	Ints9	BC028953|D14Ertd231e	integrator complex subunit 9	protein-coding	8.01528036094287	7.91645885327523	8.04282841965627	8.07885699477057	7.84616400797228	8.00104289266922	7.91730993932967	7.79483823348643	-0.164572190805765	0.302344038952415	0.614749802856398
Merged-chr13-91361722-3	chr13	91361634	91361834	+	565.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26351.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	2.95293715563086	3.08089466110501	3.11852797369515	2.86554109303977	2.80554269332688	2.93782514353893	2.53788871235446	2.69295344499233	-1.17523077055561	0.0795132086680723	0.30534988576067
Merged-chr16-24773932-4	chr16	24773828	24774028	+	995.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 8 of 12)	AT_rich|Low_complexity|Low_complexity	52073.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	5.45773699950285	5.12704150305878	5.65831821145159	5.45618179110251	5.28953728284254	5.06988693847053	5.28921067624016	5.42752116573573	-0.283010396705294	0.344113317199388	0.652610656810439
Merged-chr1-136629574-4	chr1	136629470	136629670	+	871.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177643, exon 2 of 2)	3' UTR (NM_177643, exon 2 of 2)	4669.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	4.27468430504796	3.75444732468625	3.95039067572937	3.97207685519189	4.128850539973	4.17643426905835	4.29543677111163	4.231002593705	0.5461303976506	0.192354618754937	0.491937676356628
Merged-chr7-125878191-4	chr7	125878078	125878278	+	887.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001101488)	TTS (NM_001101488)	170308.0	NM_001358287	233865.0	Mm.274389	NM_001081022	ENSMUSG00000032743	D430042O09Rik	Kiaa0556	RIKEN cDNA D430042O09 gene	protein-coding	4.61502192760729	4.07503415453501	4.37919675697678	4.6584864641781	4.38726587720178	4.15880670350276	4.48208016028841	4.46021008834279	-0.190402458834454	0.637636355784305	0.846859692033839
Merged-chr3-121847287-10	chr3	121847177	121847377	+	740.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-31975.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	3.07663054570425	2.80200738663395	3.36488518339263	3.22647265926201	3.2306282000788	3.18791586970016	3.12868779880347	3.50847855121569	0.506784913875913	0.397773226159994	0.696054529321669
Merged-chr14-75791224-4	chr14	75791132	75791332	+	840.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-4195.0	NM_026232	67554.0	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	3.85048725523837	3.79075629930961	3.85104182900437	3.66820045540175	3.76397942136704	4.11940217296549	3.78352329484335	4.12312233954129	0.479908907327538	0.284301543346224	0.596222858869618
Merged-chr16-32277639-6	chr16	32277566	32277766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027355, exon 1 of 6)	5' UTR (NM_027355, exon 1 of 6)	205.0	NM_027355	70238.0	Mm.228263	NM_027355	ENSMUSG00000014074	Rnf168	3110001H15Rik	ring finger protein 168	protein-coding	5.00290313620645	5.16971278914186	5.16999348956046	5.04431470046842	4.90962721004746	5.14309590411616	5.17507336504288	5.25652394783572	0.0435130434762375	0.886815650830341	0.957513044740158
Merged-chr6-54933525-1	chr6	54933425	54933625	+	679.0	f0_balb.idr	intron (NM_001171007, intron 9 of 11)	intron (NM_001171007, intron 9 of 11)	38136.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	3.27805786357749	3.51463229946417	3.34081318612189	3.5377519295224	3.25371343985401	3.62840987049831	3.32891490111338	3.7952211170126	0.285258374405414	0.595533974722926	0.823993328411538
Merged-chr3-18051703-4	chr3	18051577	18051777	+	888.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2648.0	NM_021560	59058.0	Mm.149938	NM_021560	ENSMUSG00000025128	Bhlhe22	Beta3|Beta3a|Bhlhb5	basic helix-loop-helix family, member e22	protein-coding	4.09086590602358	4.22634190152223	4.67040429941947	4.57486439973531	4.1324035283093	4.31856720811023	4.22105343779227	4.3268474070836	-0.416362447570867	0.308916063942399	0.621297406554096
Merged-chr16-11066251-4	chr16	11066154	11066354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009223)	promoter-TSS (NM_009223)	-44.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	7.91617703274911	7.92940841456017	8.12475382204616	8.12951639894318	8.04535854293732	7.81078005702109	8.39489713225395	7.91217147100749	0.0390481535832159	0.835668707291091	0.937516254002898
Merged-chr12-108994783-4	chr12	108994669	108994869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 4 of 6)	intron (NM_177602, intron 4 of 6)	73448.0	NM_001163175	380785.0	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	6.67555691088464	6.79228381819159	7.26180120950541	7.26849635517057	6.41894622017055	6.90101669054016	7.20545112342523	6.68771884580163	-0.28411021283542	0.273854231529045	0.585558903722128
Merged-chr15-81024041-4	chr15	81023953	81024153	+	952.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 4 of 13)	intron (NM_001082536, intron 4 of 13)	46288.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	4.88357928329247	4.76550792698223	5.46682908107837	5.37696944413847	4.65447009252137	4.58397053814757	5.12483429289024	4.72415558430523	-0.742656161767884	0.0472798088051846	0.223845902236951
Merged-chr19-44474324-4	chr19	44474219	44474419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19153.0	NM_011720	22423.0	Mm.88365	NM_011720	ENSMUSG00000036961	Wnt8b	-	wingless-type MMTV integration site family, member 8B	protein-coding	5.96896281869709	6.11537323442452	5.43865576611044	5.69150583767556	5.9224857118442	6.00849579555539	6.21019121794571	6.00842897987385	0.33865562692552	0.209942496213635	0.514484230514723
Merged-chr10-67200429-4	chr10	67200309	67200509	+	932.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 3 of 25)	intron (NM_207221, intron 3 of 25)	14659.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	4.63445787706859	4.46287648923567	4.59868421178949	4.35786790973831	4.3826299701396	4.48307774869625	4.50115425624323	4.05001677831491	-0.32786716280848	0.397371329903088	0.69576798253969
Merged-chr2-159783424-3	chr2	159783320	159783520	+	952.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163921.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	3.33240202876054	3.15702428512259	3.18987004819278	2.71203230158906	4.02741392517001	4.10308161200012	4.07350684903188	3.83762733940073	3.30080741065956	7.7156580001032e-09	4.17637126075548e-07
Merged-chr19-61227882-4	chr19	61227764	61227964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009970, intron 1 of 11)	CpG-7695	554.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	7.06407543925095	6.87648322664342	7.82524027139743	7.00677368489081	6.92764478870206	6.75040962145598	7.04154340619735	6.93394090126788	-0.449128524227106	0.079809530238127	0.305910745978441
Merged-chr4-53352889-3	chr4	53352793	53352993	+	893.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12E|LTR|ERVK	-82661.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	3.33889841665312	3.51194811997629	3.3984622228421	3.68553363868077	3.47187482388713	3.38990169496866	3.0646330964064	3.79058554012349	-0.13875881314851	0.806782608792105	0.925518505591432
Merged-chr8-70791579-4	chr8	70791474	70791674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199308, intron 1 of 25)	intron (NM_199308, intron 1 of 25)	859.0	NM_199308	546071.0	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding	6.41732524826301	6.22149527006932	6.41846252564128	6.63384743885595	6.29230367126672	6.0832196531515	6.61535966946606	5.7662773921063	-0.311411475317793	0.243894770780686	0.554947209992653
Merged-chr19-55299556-4	chr19	55299455	55299655	+	855.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360595, intron 9 of 9)	intron (NM_001360595, intron 9 of 9)	16481.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	3.50915921997864	3.92693969798761	3.88949326888711	3.67266665863723	4.00204338916659	3.85910443137305	3.82529821919077	3.56924516718119	0.210291736196168	0.658509324760624	0.857904281262009
Merged-chr5-142463914-4	chr5	142463825	142464025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172725)	promoter-TSS (NM_172725)	-6.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	7.47006754061421	7.66638626442981	7.26773684612754	7.05096899362065	7.48802730602598	7.61035562053485	7.45297945167958	7.64115070044876	0.231032850368632	0.25725071027933	0.568977947516389
Merged-chr15-55106733-4	chr15	55106617	55106817	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045093, intron 4 of 4)	intron (NR_045093, intron 4 of 4)	-5600.0	NM_145470	97998.0	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	5.01477017746483	5.04214702482121	4.79551473781668	5.13159444193569	4.94846252587148	5.01040743072775	5.23345469712245	4.79240540088139	-0.0177501810514726	0.956283921446124	0.984641708333466
Merged-chr9-99488991-4	chr9	99488880	99489080	+	755.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 18 of 21)	intron (NM_028768, intron 18 of 21)	18559.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	4.14004246927748	4.46769783022833	3.93200410332019	4.35087798880528	4.29585769909888	4.21586341211602	4.21505275289102	4.27506237805782	0.00604137211122088	0.988208106296103	0.99539609138966
Merged-chr5-21213111-4	chr5	21213036	21213236	+	800.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 5 of 26)	MTD|LTR|ERVL-MaLR	26869.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	4.33380617283044	4.11433632498961	4.59905894666967	4.33728121840376	4.12417901852203	4.22985345316076	4.22863996163552	4.10220175932689	-0.45329137548783	0.258601499088711	0.570489393947544
Merged-chr19-32957212-2	chr19	32957112	32957312	+	972.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	199635.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	3.10037687664893	3.11214516926221	3.16328433326476	3.0989370109223	3.33753203921914	3.27479399222435	3.15206982249185	3.52998948145191	0.799965880878037	0.136623123878636	0.411137391039188
Merged-chr2-71378182-4	chr2	71378051	71378251	+	837.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10597.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	3.69996506690312	4.11473933532425	3.98531395367341	3.73953453280908	4.43570077097648	4.11034016632265	3.916776389235	4.58479616826821	1.03383164698042	0.0217975529686453	0.135623078912168
Merged-chr19-34682744-3	chr19	34682672	34682872	+	951.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172838, intron 2 of 6)	Lx7|LINE|L1	41883.0	NM_008331	15957.0	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	3.93335855877775	4.16798300593374	4.07872785965285	4.64885506507766	3.583839970471	3.63700284602455	3.9669731051222	3.93162816221106	-1.28092591567114	0.00900121733048349	0.073180770801426
Merged-chr4-41741400-4	chr4	41741298	41741498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286551)	promoter-TSS (NM_001286551)	-39.0	NM_001286551	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	6.77769014578958	6.7667014905929	6.71929671006428	6.9875875375371	6.89606929645514	6.71750539840219	7.24006861355275	6.98747330448875	0.204408398741398	0.335642971092104	0.645927430703489
Merged-chr4-11110384-4	chr4	11110314	11110514	+	853.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13544.0	NR_151526	100503518.0	Mm.102270	NR_151526	ENSMUSG00000086765	Gm11827	-	predicted gene 11827	ncRNA	3.71423927965612	3.53036315629533	3.76648050329968	3.81066258869351	3.7423802818891	3.93607597338393	3.64669361843753	3.81393798723925	0.208637530768644	0.651401157693287	0.853936064978361
Merged-chr18-66002709-4	chr18	66002610	66002810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172062)	promoter-TSS (NM_001172062)	-75.0	NM_001172062	70361.0	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	8.42181576204167	8.31909028139161	8.49842394478427	8.54328810797374	8.4206006977298	8.31756881011614	8.71714665157061	8.28125001342953	-0.00504030744121914	0.976188027820864	0.991528225629167
Merged-chr5-65867945-4	chr5	65867833	65868033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	MER63D|DNA|hAT-Blackjack	4364.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	6.33425984984887	6.50070383359851	6.70347412829216	6.5216045023094	6.16520265866869	6.12682335399086	6.62717354161725	6.42050771378306	-0.257326133257634	0.274223115475057	0.58594281749517
Merged-chr14-54482740-3	chr14	54482644	54482844	+	640.311096	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	6644.0	NM_080726	140743.0	Mm.274727	NM_080726	ENSMUSG00000022176	Rem2	AW411893	rad and gem related GTP binding protein 2	protein-coding	3.36473410983046	3.29315803467774	3.47093638950764	3.49881358625326	3.33117035580665	3.42106692941667	3.17767537708056	3.12209764427195	-0.520014019057003	0.332038153935904	0.64308845362041
Merged-chr10-79704897-1	chr10	79704797	79704997	+	912.0	f0_c57.idr	intron (NM_001077184, intron 1 of 6)	intron (NM_001077184, intron 1 of 6)	539.0	NM_009768	12215.0	Mm.726	NM_009768	ENSMUSG00000023175	Bsg	AI115436|AI325119|CD147|EMMPRIN|HT-7	basigin	protein-coding	3.90421247125697	3.98456015021439	3.66522745409259	4.14601654220237	4.32555007668291	4.08194916318288	4.34193768595106	4.43418217722223	0.884998577070159	0.0435564727578646	0.212437040868305
Merged-chr2-157156343-4	chr2	157156236	157156436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011249, intron 19 of 21)	CT-rich|Low_complexity|Low_complexity	-21114.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	5.26711786801767	5.37542456549797	5.38624604765929	5.27194473986203	5.19954846875369	5.24408797612155	5.35940227066666	5.38249469715887	-0.0505110420843914	0.858105155383019	0.946507493877689
Merged-chr1-191878142-4	chr1	191878059	191878259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28622.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	6.55922182705415	6.76509237010439	6.93374568292553	6.837434651453	6.73658392065096	6.78630551982782	6.51017940521172	6.7417704196541	-0.122775234681392	0.554755698480248	0.801044670619386
Merged-chr12-100729207-4	chr12	100729105	100729305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4085.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	6.35790986304468	6.58157553097096	6.57438536677918	6.52539534013016	6.54064153027719	6.25486819095235	6.00005968108338	6.2607870506905	-0.331624693697131	0.156108357953571	0.441990326602117
Merged-chr11-63091215-4	chr11	63091113	63091313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027660, intron 7 of 7)	intron (NM_027660, intron 7 of 7)	29554.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	5.64445576180471	5.33164231161098	5.81742861616361	5.85636319148703	5.84652540811216	5.42857890122359	5.95811703813277	5.79012794548054	0.145994023902367	0.608937246660479	0.830813576385782
Merged-chr15-12795594-4	chr15	12795505	12795705	+	743.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29052.0	NM_029998	77877.0	Mm.207311	NM_029998	ENSMUSG00000022195	6030458C11Rik	-	RIKEN cDNA 6030458C11 gene	protein-coding	3.3556345628218	3.48597254740445	3.47210234462569	3.39885538997706	3.54287517227078	3.69556765127975	3.66071253674425	3.22743834044113	0.38401148312306	0.45005914655632	0.735062527081349
Merged-chr18-24529543-2	chr18	24529443	24529643	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360807, intron 1 of 7)	CpG	661.0	NM_144861	225283.0	Mm.28427	NM_144861	ENSMUSG00000040446	Rprd1a	C77387|mKIAA4077	regulation of nuclear pre-mRNA domain containing 1A	protein-coding	3.95634965860669	4.05014136057541	4.31102763648502	3.82050639629943	3.73905382139701	4.0804668675425	4.12752765986163	4.14365584553548	-0.0277148549633488	0.950640184595848	0.982312550074733
Merged-chr9-45906925-4	chr9	45906824	45907024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310839)	promoter-TSS (NM_001310839)	-13.0	NM_001361112	235315.0	Mm.220945	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	6.12624577391266	6.61124349494548	5.97391540736915	5.90661354126869	6.18792935087405	6.5784593444561	6.37333801007213	6.03743777139405	0.190359996786718	0.489954099805687	0.761966459176932
Merged-chr19-29251699-4	chr19	29251600	29251800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008413)	promoter-TSS (NM_008413)	-103.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	7.63298624321371	7.82569925370454	7.23266843678773	7.59145163051328	7.53948279117878	7.65096602358047	7.8458792904226	6.98683371500947	-0.0617332984988315	0.790861849491646	0.918885370783943
Merged-chr16-23314460-1	chr16	23314360	23314560	+	1000.0	f0_c57.idr	intron (NM_001252506, intron 1 of 6)	L1_Mus3|LINE|L1	23990.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	4.75863151858099	4.78700383577265	4.52041206546313	3.96874560633413	4.9121334227459	5.00144068123244	4.62350193805611	4.60208386665389	0.558266800949113	0.174228499492353	0.46855437538111
Merged-chr4-33250260-3	chr4	33250045	33250245	+	800.6592410000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1358.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	3.11826458618559	3.09905696847299	3.06165978438267	2.81259454781116	3.15827765027177	2.98117642797568	2.99132565448919	2.87252442518938	-0.0393654423567295	0.9476339094531	0.981331257394211
Merged-chr2-68825009-6	chr2	68824859	68825059	+	863.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36482.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	3.3333728332602	2.8889670366599	3.222245386597	3.19321400816355	3.25115087160163	3.2739808337676	3.26641944237867	3.33194247066875	0.418776472471165	0.449956865998057	0.73496293376955
Merged-chr3-94413151-4	chr3	94413030	94413230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357713)	promoter-TSS (NM_001357713)	-114.0	NM_001357713	72634.0	Mm.331198	NM_028307	ENSMUSG00000041912	Tdrkh	2700091C21Rik|Tdrd2	tudor and KH domain containing protein	protein-coding	8.45129274091781	8.39300157790276	8.43208906387514	8.63687071931993	8.54748211799335	8.54593711492868	8.62792360306481	8.41100202063907	0.0604492062273821	0.694586695227438	0.876020808682138
Merged-chr3-100969726-4	chr3	100969608	100969808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013026)	promoter-TSS (NM_001013026)	-45.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	7.8909751056005	7.80525764089703	7.63272270440765	8.00817068915566	7.85591823806363	7.60181076761431	7.96266078409295	7.42906920175882	-0.148591026176839	0.445457766792348	0.731480702512456
Merged-chr11-50131366-4	chr11	50131243	50131443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290759)	promoter-TSS (NM_001290759)	-17.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	7.05900549678191	6.72942603403444	6.73233705185846	6.57588466310191	7.28691109821572	7.41562220149093	7.29305669370042	7.19176950654075	0.726167084339681	0.000308331716765541	0.00518467830561173
Merged-chr1-177726282-4	chr1	177726182	177726382	+	779.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR34D_MM|LTR|ERVK	-3532.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	4.24297801880418	4.59681025766147	4.37527679428712	3.39797911410358	4.52426803685617	3.99969000025807	4.39528045658565	4.49160592653132	0.323635036170707	0.529267131946271	0.785568128801477
Merged-chr6-97150424-4	chr6	97150311	97150511	+	794.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1528.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	3.1538404736152	3.56784660268578	3.22323045198597	3.3891730330033	3.4559001409053	3.79522916069574	3.45539961832382	3.76538935625781	0.900781823141694	0.0898465810096816	0.327346020178914
Merged-chr14-31456772-2	chr14	31456672	31456872	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20672.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	3.21825547020613	2.83231890430661	3.10577170255704	3.02370673462758	2.83247963695468	3.21764205772469	3.1508850369112	3.16172312308591	0.180866051267624	0.761528096647298	0.906556667566817
Merged-chr2-129512332-4	chr2	129512262	129512462	+	988.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	L1_Mus2|LINE|L1	24240.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	5.84260507400732	5.69716705460232	6.11050861342835	4.90373649009331	5.46458571529536	5.26144173970748	5.29811393948068	5.47170976473104	-0.54859369945471	0.125798266352775	0.393885312133207
Merged-chr4-40680586-4	chr4	40680491	40680691	+	807.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22325.0	NM_025545	66408.0	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	3.63911935262483	3.84546145932305	3.63960537603109	3.73138208970562	3.84681720062542	3.69996470898915	3.91521066573699	3.39767898935499	0.0468853018611352	0.922754968153812	0.971413012934631
Merged-chr19-5131409-3	chr19	5131301	5131501	+	716.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-12993.0	NM_008451	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	3.36135170125149	3.83292196038042	3.4216288886525	3.56680562892073	3.12099479452375	3.34700659077751	3.84446213153487	3.41982876529416	-0.333012104858068	0.556655497330983	0.802199963024407
Merged-chr18-80708197-4	chr18	80708141	80708341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164112)	promoter-TSS (NM_001164112)	-68.0	NM_001164112	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	7.388923545037	7.39682317989147	7.07864080406186	7.15078878145208	7.51461687952975	7.46472012015376	7.34363275345371	7.59323521296605	0.303471615393018	0.101648638290762	0.349885064507838
Merged-chr13-24698856-4	chr13	24698732	24698932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080381, intron 13 of 14)	intron (NM_001080381, intron 13 of 14)	60184.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	6.92319230721062	7.27677647042381	7.29452984144138	6.67387265216286	7.05830575151082	6.96387341621674	6.66184752696973	6.45088527726792	-0.345105205487378	0.167028449380288	0.458497946900768
Merged-chr12-4544589-4	chr12	4544485	4544685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	20472.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	6.39809077097501	5.78638781197762	6.15427197410515	6.0940139214242	6.02918840231565	6.02650466318201	6.1227053305251	5.60247134344364	-0.247695347325778	0.355374726504252	0.661970523862821
Merged-chr12-100426468-4	chr12	100426359	100426559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	94363.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	7.43278956859221	7.18533168489428	7.58113955389413	7.65164104752303	6.5736163372646	6.71394251413042	7.13304908329316	7.11785682158562	-0.787266905651109	0.000461812273185577	0.00723560109907027
Merged-chr15-9140434-4	chr15	9140312	9140512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013787)	promoter-TSS (NM_013787)	42.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	8.24627863711123	8.41771833454994	8.27694955731972	8.563047236445	8.55709373450516	8.41935856292617	8.61043110370145	8.28306672728852	0.108941280507373	0.514093920285633	0.776898400611478
Merged-chr4-95871366-3	chr4	95871263	95871463	+	745.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 14 of 15)	intron (NM_001113412, intron 14 of 15)	95672.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	3.70506584143571	3.42217799637185	3.5491335927039	3.42047166485723	3.85485939448012	3.72081891980667	3.42100676057038	3.60141110916087	0.460135004327152	0.351524816168347	0.658893189148013
Merged-chr19-46760905-3	chr19	46760814	46761014	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033569)	promoter-TSS (NM_033569)	-695.0	NM_033569	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	4.96273062327577	5.17937257447918	4.47518714485984	4.79883939451126	4.96855482655371	4.83663254263068	4.79749407135298	5.14835337913619	0.135081103967396	0.701101466690737	0.879546358658747
Merged-chr6-125594979-4	chr6	125594886	125595086	+	927.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 10 of 51)	MTD|LTR|ERVL-MaLR	42038.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	4.3989411086218	4.42256149049603	4.87453259153836	4.79212534866429	4.7226531249731	4.57763732293528	4.88304202933507	4.69447852917885	0.162483514625602	0.655591921434791	0.856188340322108
Merged-chr10-85185965-4	chr10	85185851	85186051	+	871.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007771)	promoter-TSS (NM_007771)	-897.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	4.39890356295769	4.39861045293071	4.21206996144481	4.12967998801548	4.42678274085791	4.43847093561747	4.78293680863921	4.70505269893615	0.725653085304911	0.0543877580645376	0.243506493349838
Merged-chr8-126917702-3	chr8	126917597	126917797	+	970.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28224.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	4.3234683700602	3.65067008698723	4.24934688677456	4.07482638186874	3.77454008062043	3.7926698629138	3.87853628785952	3.72983995476164	-0.839023331952572	0.0750756635209572	0.295671364757229
Merged-chr10-21688524-2	chr10	21688424	21688624	+	609.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2321.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	2.70859690092863	2.62045783416076	2.70893146019999	3.0129855041387	2.73210614702967	2.38467806782796	2.57489872169244	2.44188025708692	-1.18791907425376	0.11422048106246	0.373837784954674
Merged-chr17-86964765-4	chr17	86964679	86964879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	1668.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	6.260382827103	6.23066743000485	5.79928384809257	5.93380647431202	6.45569568778868	6.14984945704994	6.41631730699193	6.05783060328365	0.343182823354436	0.171995474877297	0.465252629537357
Merged-chr3-154540349-3	chr3	154540223	154540423	+	923.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56388.0	NM_009968	12972.0	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	3.00245685440422	3.1132863805282	3.28462623325711	2.77879098664525	3.92559615928165	3.46637121968283	3.69960118245052	3.84569545235065	2.59333565193453	4.14207584530834e-06	0.000125665508051761
Merged-chr3-69006517-3	chr3	69006416	69006616	+	749.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356976, intron 2 of 23)	intron (NM_001356976, intron 2 of 23)	1778.0	NM_133786	70099.0	Mm.206841	NM_133786	ENSMUSG00000034349	Smc4	2500002A22Rik|C79747|SMC-4|Smc4l1	structural maintenance of chromosomes 4	protein-coding	3.44108800574478	3.46687144483699	3.65383982926378	3.50486068136884	3.42316548348937	3.55608749860105	3.63826185181544	3.4397452634711	-0.0120038861027401	0.98048663936445	0.99281244474172
Merged-chr6-113638494-4	chr6	113638413	113638613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172161)	promoter-TSS (NM_172161)	46.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	7.69480279665892	7.97536448737197	7.81517659913707	7.60029247722543	7.77659023279939	7.89004362260084	7.82907001154262	7.72372106281897	0.0409143150919013	0.814334531824366	0.928327532350968
Merged-chr9-95639030-4	chr9	95638931	95639131	+	930.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 2 of 8)	intron (NM_029620, intron 2 of 8)	1403.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	4.48466677876427	4.25811058900746	4.85913864584609	4.95552182621091	4.60396232757004	4.210136749359	4.37615512679285	4.91873196838563	-0.262995986504586	0.533925813093062	0.789042708189764
Merged-chr8-13644381-4	chr8	13644335	13644535	+	961.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	33152.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	5.48431752047419	4.66386680671617	5.46111538221819	5.7754135466253	4.51418084084079	4.9834674279977	4.6965432307429	4.57827372962704	-1.38995646230011	0.000380311138852212	0.00617194859834966
Merged-chr11-89035732-4	chr11	89035620	89035820	+	944.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25028.0	NM_019505	56077.0	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	4.92535396749388	4.53224784847403	4.83635847216001	4.85945814763988	5.98639971864278	6.09611434405879	6.14518604433193	6.37210512275433	2.31173417284024	5.86506286004655e-15	9.42368644052491e-13
Merged-chr13-96435908-4	chr13	96435808	96436008	+	907.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001042714, exon 8 of 14)	exon (NM_001042714, exon 8 of 14)	35252.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	4.44678480363183	4.1413759080105	4.77783435884445	4.72985429187079	4.36655163192488	4.44357039369258	4.34135484246343	4.31234463479275	-0.436467949844757	0.271810603378544	0.583379777405662
Merged-chr9-123563786-4	chr9	123563693	123563893	+	974.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357485, intron 7 of 19)	intron (NM_001357485, intron 7 of 19)	34040.0	NM_030692	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	5.04150343533248	4.84987162053233	5.07741960682992	5.80207317391453	5.27960517933344	5.03085862730533	5.1831076392035	5.23604280252739	-0.159598500584539	0.664059142104467	0.860824757192769
Merged-chr1-131462802-3	chr1	131462698	131462898	+	700.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	64563.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	3.97658153277719	4.09476067253229	3.70256633358906	3.80537065086205	3.74070887903184	4.562242745064	3.95999903334559	4.02337559107761	0.531558349831332	0.264303960870342	0.576455127446606
Merged-chr7-19748092-2	chr7	19747992	19748192	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008990, intron 1 of 8)	intron (NM_008990, intron 1 of 8)	1481.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	3.43915799426349	3.01002276563952	3.1800452089206	2.81644211751464	2.75385036307562	3.10763493300447	3.04839311543804	3.33999944656149	-0.195954090590585	0.759871180145617	0.905842932790046
Merged-chr9-57765966-4	chr9	57765851	57766051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007713)	promoter-TSS (NM_007713)	-91.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	6.56467410774973	7.11405739366519	7.14081395450695	6.83406084157765	7.21304500028537	7.28306728955948	7.01183200892213	7.10159153814975	0.310827504842294	0.144246177142841	0.423168911457452
Merged-chr3-132756429-4	chr3	132756319	132756519	+	918.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163455, intron 22 of 25)	intron (NM_001163455, intron 22 of 25)	72275.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	4.15872709958706	4.49745009894493	4.45964666234181	4.99937505140809	5.0866349988947	4.49718692884535	4.48334003444346	4.73712114200396	0.314367043445636	0.46621418580419	0.746309671232575
Merged-chr6-147092152-2	chr6	147092052	147092252	+	783.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081237, exon 1 of 3)	exon (NM_001081237, exon 1 of 3)	1077.0	NM_001081237	232539.0	Mm.491206	NM_001081237	ENSMUSG00000040102	Klhl42	A330079N23Rik|AI450355|C230080I20Rik|Ctb9|Klhdc5|mKIAA1340	kelch-like 42	protein-coding	3.48326045172741	3.20580721770676	3.22867265033801	2.88226185545452	3.10958848284088	2.86760886555551	3.21584353581976	3.22687862649978	-0.376484146143265	0.53857022308957	0.791666974563585
Merged-chr18-53255523-4	chr18	53255437	53255637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	9875.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	6.91374587180511	6.5651795870186	6.38702090421985	6.72086834956215	6.92869111423655	6.76028681251156	6.68932099350176	7.06473250857002	0.294215378707288	0.181889163552522	0.478542212109808
Merged-chr9-118638857-4	chr9	118638772	118638972	+	965.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	32163.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.33313402091186	5.4427038793113	6.30109067131505	6.21143245668955	5.99882123101942	5.33760184368588	5.98846746476525	5.88205096692205	-0.447618148075282	0.158167551798955	0.445095395264695
Merged-chr3-109439437-3	chr3	109439328	109439528	+	837.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	98745.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	3.45950740834155	3.18346973607003	3.40777496921595	3.60039901091114	3.12435343586741	3.07740280538941	3.58841912931659	3.10794003105861	-0.665942883704524	0.251633386388572	0.56294436285486
Merged-chr2-130467613-2	chr2	130467513	130467713	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 1 of 21)	MTD|LTR|ERVL-MaLR	17335.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	2.37195226945768	2.58293310376078	2.37211626417306	2.4085310468192	2.96709377075638	2.84297640829127	3.05184321994493	2.79365328395183	2.44898078562223	0.000530273995323283	0.00809270426953601
Merged-chr7-83884383-4	chr7	83884260	83884460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030705)	promoter-TSS (NM_030705)	-19.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	7.50526226696708	7.50374265092834	7.79710024700587	7.77024848609628	7.74273550389801	7.98957340630609	7.89596990310128	7.75310390820219	0.247214549950075	0.164553064243769	0.454830996687285
Merged-chr12-116461382-4	chr12	116461286	116461486	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133762, exon 29 of 29)	3' UTR (NM_133762, exon 29 of 29)	-24334.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	4.95801633302813	4.49220745790545	5.31392288209427	5.44425648768003	4.40889656324036	4.78749036684447	5.03234200466862	4.64833778639943	-0.753499429816209	0.0610359341216398	0.261133422783206
Merged-chr7-100460896-3	chr7	100460786	100460986	+	915.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 32 of 32)	ORR1E|LTR|ERVL-MaLR	-12105.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	4.32161416728647	4.10106009580152	4.32229863478142	4.44773097093632	4.05990564948908	4.26691598985539	3.73299493096918	4.65222786807782	-0.217236873441425	0.634499535799563	0.845211708999459
Merged-chr14-32163618-2	chr14	32163518	32163718	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033988, intron 1 of 9)	URR1B|DNA|hAT-Charlie	-1968.0	NM_001284319	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	3.26866540400479	3.46678336030334	3.26908425503948	3.17208765131919	3.35184283822408	3.32113571949613	3.19866075011107	3.20835646194837	-0.0690999827029958	0.897220893471179	0.961579251319507
Merged-chr1-183623480-4	chr1	183623412	183623612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-125465.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	5.56247983270065	5.1313972295692	5.79946038383693	6.37793034485597	5.91339924145177	5.52591884239673	5.76981045792753	6.1475116081617	0.0688070728544043	0.846893350060685	0.942052880400843
Merged-chr4-94614478-4	chr4	94614390	94614590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290568)	promoter-TSS (NM_001290568)	-1.0	NM_001290568	67694.0	Mm.240619	NM_026319	ENSMUSG00000028576	Ift74	1700029H06Rik|Ccdc2|Cmg1|b2b796Clo	intraflagellar transport 74	protein-coding	7.15044371757762	6.92251591825944	6.91758689408207	7.12284029180334	7.28680235437543	7.05363329807602	7.30260837258132	6.81421395389178	0.135714159285543	0.511462555898958	0.7754242532606
Merged-chr13-12058614-6	chr13	12058514	12058714	+	999.194458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023868, intron 1 of 104)	intron (NM_023868, intron 1 of 104)	48331.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	5.87510440636616	5.3040975503541	5.81610804380354	5.53636115730087	4.98917443600239	4.98486448064444	5.13011319093693	5.18598480322918	-1.02965541280465	0.000870900010442637	0.0120555798995131
Merged-chr16-11317557-4	chr16	11317461	11317661	+	847.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011608, intron 2 of 2)	L1MA9|LINE|L1	3752.0	NM_011608	21935.0	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	4.19611648177453	3.94168524388108	3.8832467408601	3.94551391632342	3.70595275894795	3.84081456007331	3.70717275943395	4.11226537829682	-0.409861670559925	0.365027074234776	0.669749500359775
Merged-chr10-81350570-4	chr10	81350466	81350666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010440)	promoter-TSS (NM_010440)	-109.0	NM_001163166	15353.0	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	8.59708277684116	8.63299898340246	8.57079098304753	8.53596610493254	8.53253117803042	8.70600715647453	8.59043298196812	8.10905596198685	-0.101130846972332	0.560143490554761	0.80421270980893
Merged-chr3-59260947-4	chr3	59260868	59261068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 32 of 43)	intron (NM_177855, intron 32 of 43)	2017.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	6.09978476422763	6.37116942255875	6.17944054968	6.43648442242989	5.89984104211089	5.60411321852426	5.82574681142505	5.9230451663217	-0.729443221059005	0.00315259083415793	0.0331900995391994
Merged-chr3-105687612-4	chr3	105687513	105687713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017397)	promoter-TSS (NM_017397)	-42.0	NM_017397	53975.0	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	8.13802401619877	8.15327101587	7.87158715768637	7.87722259829402	8.17151462212139	8.38909260808459	8.1609228348281	8.2348023333285	0.290744592144579	0.0827492008715949	0.312483705705303
Merged-chr11-70655517-4	chr11	70655424	70655624	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011072)	promoter-TSS (NM_011072)	-874.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	5.23908888768096	5.69495307462911	5.30757553642955	4.67001307333689	6.17308062181897	5.9912161294063	5.67246319114504	5.59701576649458	1.04402657547468	0.0023575392612408	0.0265470614367061
Merged-chr12-75818278-4	chr12	75818195	75818395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005510)	promoter-TSS (NM_001005510)	-23.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	7.03835309972279	6.94383204060832	6.85728290000682	6.97099506553025	7.06688292091057	6.88650164184509	7.22481009415459	7.05861227185871	0.1540891899114	0.419808303685298	0.7128738995638
Merged-chr16-10846657-4	chr16	10846542	10846742	+	696.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11583.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	3.60537622866335	3.79278397352499	3.42054659813466	3.85307308127059	3.57190652110714	3.8881458646756	3.8953273121879	3.95486138826873	0.408455015938484	0.40436998180091	0.701468388930761
Merged-chr7-43670285-4	chr7	43670179	43670379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-1752.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	8.03965730489075	8.16555981843494	8.15967250231381	7.48248108802612	7.98865895312014	8.1018967161964	8.072474514085	7.98889278676963	0.0735196945418807	0.716804188268727	0.886742766811145
Merged-chr3-88023482-2	chr3	88023382	88023582	+	806.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022031, intron 5 of 6)	CpG-9271	4029.0	NM_022031	73940.0	Mm.294467	NM_022031	ENSMUSG00000004894	Hapln2	4930401E20Rik|Bral1	hyaluronan and proteoglycan link protein 2	protein-coding	3.2003802478952	3.09544014477292	3.37332767527453	3.08779820490716	3.25675091285016	3.18300025885068	3.3595142491799	3.61492692508239	0.643380610678656	0.237528778363554	0.547721294387049
Merged-chr5-31772766-3	chr5	31772656	31772856	+	684.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 3 of 11)	L1ME1|LINE|L1	74706.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	3.79960020953718	3.8137447913299	3.46723390979149	3.54726662568804	3.85221266523513	3.81695486804	3.6301013684559	3.84582939689087	0.395638078248739	0.398519167837088	0.696793179038619
Merged-chr12-32017776-4	chr12	32017672	32017872	+	948.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011158, intron 2 of 10)	intron (NM_011158, intron 2 of 10)	43507.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	4.49115931175381	4.30492686481578	4.75615212175153	4.35652433409658	4.94981542069712	5.30641771931707	5.29922835840626	5.34816678772036	1.51938227294686	8.79309812101547e-06	0.000245733777446313
Merged-chr1-39535682-4	chr1	39535574	39535774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028043)	promoter-TSS (NM_028043)	-27.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	7.90843378151303	8.21792417321674	7.47993748375158	7.83786037522667	7.95904994818497	8.15660001148759	7.78320366056643	7.6698321078966	0.0205200307481115	0.922511273764931	0.971298693028147
Merged-chr13-90057859-4	chr13	90057721	90057921	+	978.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028012, intron 3 of 7)	Charlie24|DNA|hAT-Charlie	31787.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	4.7228260535744	4.66438470117101	5.41589900498503	5.38980305266002	4.86983660082455	4.35639077448605	4.96294613523559	5.14353024689348	-0.464200158506879	0.25362720674996	0.56491319426903
Merged-chr5-147742724-4	chr5	147742643	147742843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16755.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	5.81728827682245	5.49937147969141	5.56429596246553	5.59924350860156	5.45845510429562	6.12200291531058	5.81126053808304	5.81416223632349	0.311539975726481	0.268018243877196	0.579851924935625
Merged-chr10-96239082-1	chr10	96238982	96239182	+	745.5	f0_balb.idr	intron (NR_110448, intron 1 of 2)	intron (NR_110448, intron 1 of 2)	12875.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	3.35855589593559	3.38716667099868	3.61879075133113	3.63226410387769	3.28486627127768	3.41228972400921	3.22760757623386	3.29841491682243	-0.730358992143111	0.164817996038525	0.455072150356386
Merged-chr1-151997784-4	chr1	151997677	151997877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 2 of 5)	intron (NM_197990, intron 2 of 5)	92543.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	6.34481452531253	6.0927746783738	6.12104207153708	6.34722123808781	6.43006961266424	5.77651567509976	6.10998986143521	5.98720343493185	-0.187035228956941	0.469467040660573	0.748378822236993
Merged-chr11-8760065-4	chr11	8759985	8760185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-95550.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	6.72206612526812	6.94770499185328	6.88240661975475	6.80701124272417	6.93659623006169	7.16312541674207	6.82013725227113	7.32868295494985	0.32054039967376	0.123399181170668	0.389533089639902
Merged-chr16-22398922-4	chr16	22398842	22399042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358428, intron 9 of 12)	intron (NM_001358428, intron 9 of 12)	39426.0	NM_001358428	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	5.70912497248242	6.01678973481112	5.93858180999778	5.80444774887572	6.22554798264426	6.34618695213437	6.35146669315248	6.18622627592792	0.632389910917516	0.00680844295602995	0.0596893904627732
Merged-chr1-40322035-4	chr1	40321929	40322129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2560.0	NM_001356478	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	6.98316134215668	6.63282489634645	6.93382268250256	7.13834204759503	6.67312081703341	6.82270045748788	7.0325915175525	6.99176740102403	-0.0855504364843913	0.693965913238828	0.875656793802988
Merged-chr12-33433996-4	chr12	33433907	33434107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172253, intron 2 of 3)	intron (NM_172253, intron 2 of 3)	4383.0	NM_172253	28071.0	Mm.196472	NM_172253	ENSMUSG00000020561	Twistnb	2410173G11|2810024J17Rik|D16Wsu83e	twist basic helix-loop-helix transcription factor 1 neighbor	protein-coding	6.62313452614426	6.89907194609162	7.04375264154697	6.74330223651918	6.69639986738454	6.70160415422093	6.76910496116849	6.77068426623444	-0.139290340744669	0.497339308024726	0.767033164454237
Merged-chr3-79221885-2	chr3	79221807	79222007	+	634.5	f0_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	8988.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	3.25348798313448	3.38672981476798	3.31301667327745	3.18306406886829	3.49930386528771	3.36574246586249	3.35651753939624	3.36774905473193	0.440090550309845	0.391323327725791	0.691068990195101
Merged-chr15-38602349-4	chr15	38602277	38602477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-7443.0	NR_045757	69679.0	Mm.416890	NR_045757	ENSMUSG00000102106	2310043O21Rik	-	RIKEN cDNA 2310043O21 gene	ncRNA	6.1688195667752	6.03622510602771	6.20905987163379	6.61580862553859	6.24202842247859	5.75451185558906	6.03537402548432	6.33265088848111	-0.27017738172295	0.316825628304053	0.628801343883957
Merged-chr4-58985313-3	chr4	58985207	58985407	+	732.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025968, intron 1 of 9)	intron (NM_025968, intron 1 of 9)	1771.0	NM_025968	67103.0	Mm.34497	NM_025968	ENSMUSG00000028378	Ptgr1	2510002C21Rik|Ltb4dh|Zadh3	prostaglandin reductase 1	protein-coding	3.39746874184946	3.58946416592394	3.45385737760716	3.51800355797615	3.47056000849284	3.32452498385076	3.32794282369289	3.55674963964129	-0.234100399742538	0.643098665911397	0.849459897971419
Merged-chr5-88675441-6	chr5	88675311	88675511	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178700, intron 1 of 9)	CpG	169.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	4.66584855372189	4.9476169315551	5.21492309221239	4.97096388924727	4.81948520771498	4.84385608753957	4.84149727096853	4.96686778760125	-0.194644922062253	0.556116022267767	0.801835080198288
Merged-chr7-4865256-3	chr7	4865161	4865361	+	952.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026158, intron 1 of 5)	B2_Mm2|SINE|B2	918.0	NM_026158	67441.0	Mm.41385	NM_026158	ENSMUSG00000052605	Isoc2b	0610042E07Rik|AI553388|Isoc2	isochorismatase domain containing 2b	protein-coding	3.47467063472419	3.43335318322542	3.54953480736963	3.68559778932778	4.71695589269029	4.22136106200802	4.74533806586549	4.82427283613091	2.83503892396057	4.21212457571818e-08	1.96728881348454e-06
Merged-chr9-89872380-4	chr9	89872303	89872503	+	751.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37372.0	NM_001357744	19417.0	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	3.41330404048157	3.89930471904694	3.65603330141332	3.51308363683007	3.97602245628523	3.71722267335327	3.97651719168276	3.76019334385687	0.702823203001414	0.140829180557447	0.417400152957072
Merged-chr7-116459297-4	chr7	116459166	116459366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15808.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	6.80331155591353	7.04070184217878	6.4967974273718	6.84313356698108	7.05056766917147	7.14248048133013	7.02772711266775	6.98621162555088	0.327367383097436	0.111244138836545	0.368537125696065
Merged-chr9-56200843-3	chr9	56200741	56200941	+	623.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172924)	TTS (NM_172924)	-39771.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	3.16112122954353	3.2533499246867	3.16150465957265	3.22133174106982	3.09127505692319	3.38910999083567	3.36895472993283	3.0982590500869	0.142319307855188	0.794626866482507	0.920584812443453
Merged-chr11-53891844-4	chr11	53891742	53891942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011396)	promoter-TSS (NM_011396)	-139.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	8.92768416942187	9.03854084765618	8.81861151783268	8.66795838609304	8.78899829862784	8.96432735141856	8.86709033841522	8.47164053288006	-0.102269192202289	0.554593354190312	0.800929258382783
Merged-chr7-122231359-4	chr7	122231267	122231467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HERVL74-int|LTR|ERVL	11871.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	6.97612984617136	7.13086206800553	7.30652750404696	7.37320970875418	6.97970723813899	6.70986853037055	7.05337919703002	7.2295853895544	-0.28252860924645	0.177438157819125	0.472816361014056
Merged-chr19-45737102-3	chr19	45737006	45737206	+	636.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010205, exon 5 of 5)	exon (NM_010205, exon 5 of 5)	5778.0	NM_001166361	14179.0	Mm.4012	NM_010205	ENSMUSG00000025219	Fgf8	Aigf|Fgf-8	fibroblast growth factor 8	protein-coding	2.79244729031106	2.80170751851491	2.79279089153465	2.99141768482475	2.60429197177611	2.70005725291281	2.72186692272436	2.59637284334246	-0.998012577540592	0.128257588192854	0.398517848349011
Merged-chr5-140829427-5	chr5	140829356	140829556	+	726.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	ID_B1|SINE|B4	975.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	2.95349482721863	2.80013170083524	3.11707699709277	3.03482535270769	2.84245236525974	2.87224142299907	2.69050739059291	2.69676922377009	-0.930600827803717	0.144393563659112	0.423506982340208
Merged-chr7-110014464-4	chr7	110014367	110014567	+	757.575012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-3784.0	NM_181517	233726.0	Mm.222328	NM_181517	ENSMUSG00000066232	Ipo7	A330055O14Rik|C330016G14|Imp7|Ranbp7	importin 7	protein-coding	4.57052007129588	4.68757370218478	4.44709928529875	4.43666316860062	4.23522953689601	4.28415469432727	4.62564823645694	4.84938740836562	-0.0391849888957649	0.919967159639652	0.970406583631903
Merged-chr8-69193474-4	chr8	69193386	69193586	+	947.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15560.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	4.11449032959496	4.22363397557315	4.11506895181269	4.23807438061829	4.64731356351595	4.74487853845079	4.85534246482878	4.68094666265729	1.24174135656001	0.000711238117775844	0.0102459457569656
Merged-chr11-99386064-4	chr11	99385944	99386144	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010660, exon 7 of 8)	exon (NM_010660, exon 7 of 8)	3320.0	NM_010660	16661.0	Mm.22662	NM_010660	ENSMUSG00000019761	Krt10	D130054E02Rik|K10|K1C1|Krt-1.10|Krt1-10	keratin 10	protein-coding	5.18784443138683	5.39210085892086	5.28539934107826	5.24625495167976	5.65113092049448	5.5768615149247	5.25931736856075	5.18518427897122	0.290852283235819	0.323460018492665	0.6349050176844
Merged-chr12-80839846-4	chr12	80839755	80839955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178682, intron 2 of 5)	MTE2b|LTR|ERVL-MaLR	49323.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	6.21208936513723	6.70076843018518	6.04605693852132	5.87188239179257	6.47359346522086	6.1317581439957	6.31067737202517	6.16900859827837	0.0669603550436542	0.808500618597862	0.926092305157072
Merged-chr2-116975206-4	chr2	116975132	116975332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75080.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	5.93308444393798	6.43669277418696	6.22367630062123	5.82574295277207	6.00064482955571	6.26237060016835	5.99305699800077	5.80814192593286	-0.148102953527486	0.583043819946414	0.816904287158464
Merged-chr14-54398054-4	chr14	54397946	54398146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	11426.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	5.85749938238326	5.86932448437518	5.90348827721428	6.10772279284569	5.75215514436182	5.6972677855558	5.68429554769832	5.60210299624899	-0.429771854303592	0.0887643842461737	0.32515877238734
Merged-chr1-34564561-4	chr1	34564470	34564670	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3627.0	NM_009356	21756.0	Mm.14418	NM_009356	ENSMUSG00000037529	Prss40	Tesp2	protease, serine 40	protein-coding	4.56463814164781	4.51552983831949	4.95838470695146	5.13590594176142	4.69348522259611	4.18975579001112	4.70030990484446	4.43052319699957	-0.653080819349818	0.104775486052686	0.355998583309184
Merged-chr2-167376344-4	chr2	167376240	167376440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27162.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	5.81169664596062	6.46219283302019	6.60842670536528	6.41530896418107	6.22931307231913	6.09513718585975	6.21178433315515	6.33193017550481	-0.212565220388409	0.406966499668123	0.703406827972926
Merged-chr18-21122128-4	chr18	21122032	21122232	+	844.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49788.0	NM_008586	17288.0	Mm.2682	NM_008586	ENSMUSG00000024313	Mep1b	Mep-1b	meprin 1 beta	protein-coding	4.28209634119313	3.94406710462303	4.241302312401	4.26280421024911	4.01526573703613	3.78679233255264	3.99412590278448	4.35893396995285	-0.349988153883763	0.42192834121191	0.714309708855546
Merged-chr5-113854738-3	chr5	113854622	113854822	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 3 of 10)	intron (NM_011779, intron 3 of 10)	-24221.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	4.72400647140311	4.41676882639759	3.9429184086518	4.73416338504155	4.0397847459986	4.1263884977995	4.49194090294059	4.34670353436415	-0.565471316239534	0.201563167942312	0.504042465253156
Merged-chr11-74484175-3	chr11	74484087	74484287	+	742.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 3 of 24)	intron (NM_001015046, intron 3 of 24)	105971.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	3.68989016233261	3.50244144315895	3.27097852472191	3.40852565974713	3.91027338954355	3.701297804972	3.86301504523162	3.73850908058666	1.05037926542297	0.0285540523191244	0.16219367089801
Merged-chr19-12472117-4	chr19	12472016	12472216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172442, intron 8 of 8)	intron (NM_172442, intron 8 of 8)	11337.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	6.585253605551	6.340949601558	7.04023952821885	6.75916790918949	5.98609227462705	5.72958062130909	5.75734265742386	6.0787159897884	-1.2141307696474	3.0347579120386e-06	9.54461266588093e-05
Merged-chr9-108761739-3	chr9	108761662	108761862	+	766.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34232.0	NM_029634	76500.0	Mm.276336	NM_029634	ENSMUSG00000032599	Ip6k2	1500005N04Rik|AW050208|Ihpk2	inositol hexaphosphate kinase 2	protein-coding	3.55780981714821	3.42587585441506	3.19091659040503	3.56743368296579	3.54494664739248	3.92141044593771	3.59559327171476	3.385505913513	0.552888532174085	0.292887079828799	0.605378211084998
Merged-chr4-9144286-3	chr4	9144224	9144424	+	744.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124969.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	3.37141341410138	3.36317957504801	3.37182752983651	3.72835986114264	3.31661487350607	3.48610115737555	3.89058035972764	3.48606243302261	0.253782295767188	0.640312219477012	0.848082162039303
Merged-chr1-134093167-4	chr1	134093108	134093308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-14053.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	8.78366502223278	9.07442881959621	9.12212423905095	8.79133396386869	9.03528943233146	9.14296871443161	9.21265184849932	8.97024058714933	0.177715431307412	0.264817974543867	0.576642744873648
Merged-chr8-84147941-4	chr8	84147839	84148039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145970)	promoter-TSS (NM_145970)	-99.0	NM_001163752	74666.0	Mm.33625	NM_029045	ENSMUSG00000008129	4930432K21Rik	-	RIKEN cDNA 4930432K21 gene	protein-coding	6.52175160090988	6.31378392715284	6.00892124452043	6.10195118712782	6.44217897110011	6.53153265466124	6.17266965223825	6.51823834597564	0.269557291556429	0.260702802222124	0.57252299176491
Merged-chr2-145903283-4	chr2	145903194	145903394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141965)	promoter-TSS (NM_001141965)	53.0	NM_001141965	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	6.89468639909847	7.03436777132003	7.3084437233569	6.88356049582268	6.76765504110067	7.031624239154	6.93953375335912	7.11407920870964	-0.0983279113733016	0.638140519167856	0.847040716325261
Merged-chr2-32917728-4	chr2	32917636	32917836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 5 of 13)	intron (NM_146119, intron 5 of 13)	41602.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	7.8235903388882	7.91117832753689	7.60452336674172	7.74812536273226	7.14763985077784	7.55638642560856	7.54986674965233	7.09821868612808	-0.566398644554345	0.0040569816244056	0.0405123309544846
Merged-chr4-88738676-1	chr4	88738576	88738776	+	562.0	f0_balb.idr	Intergenic	B3|SINE|B2	-16168.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	3.36363774172748	3.55282022638872	3.54144179817652	3.43310391263062	3.84674022464168	3.65765467470866	3.72918135728181	3.48310560192122	0.698309576839362	0.148537789304513	0.430347252723296
Merged-chr1-85838236-4	chr1	85838144	85838344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355046, intron 5 of 9)	intron (NM_001355046, intron 5 of 9)	44227.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	6.91759314515614	6.90276793190183	6.706339838799	7.03352644668139	7.01072218695301	6.62959215884876	7.11959117309536	6.83322457411085	0.0185475958522459	0.930012191567479	0.974727857709636
Merged-chr5-21717385-4	chr5	21717249	21717449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-15727.0	NM_001359965	242864.0	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	4.87917290753756	5.41381725272937	5.61929900716318	4.94058868171867	5.08954686281569	5.01921527761502	5.07558260749266	5.28491913009563	-0.223033331683907	0.514802458817337	0.777276037082053
Merged-chr7-118487171-3	chr7	118487107	118487307	+	905.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033380, exon 1 of 1)	3' UTR (NM_001033380, exon 1 of 1)	4768.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	4.18242882286902	4.00692875516035	4.30417395581048	4.15325214833707	3.82569003550306	3.91036898265858	3.59315017377072	4.18041313725364	-0.736215772668953	0.103200791093699	0.352873128956895
Merged-chr4-59864890-3	chr4	59864793	59864993	+	956.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 2 of 8)	intron (NM_172468, intron 2 of 8)	50163.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	3.99694881737065	4.07644631954948	4.40128505702576	4.41309480643197	3.58160418033082	3.96397858205951	3.82972490830339	3.84238898608449	-1.26537652345483	0.00608076608234493	0.0548085157623439
Merged-chr12-110822563-4	chr12	110822463	110822663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011973, intron 4 of 11)	intron (NM_011973, intron 4 of 11)	18376.0	NM_011973	26448.0	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	6.08127784364202	5.61348768745192	5.55237756199245	6.07137082340939	5.97279760805508	5.6710659149563	6.03145671341931	6.13559666464259	0.160653261047775	0.564436247910344	0.806795744522971
Merged-chr4-11007794-4	chr4	11007708	11007908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175175)	promoter-TSS (NM_175175)	-189.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	8.42345560532794	8.77234358953724	8.73449272319708	8.53865355174408	8.76077359675188	8.73876746198527	8.86510492949311	8.32542783743182	0.0819205012764978	0.647549246740531	0.851667779256884
Merged-chr7-126194340-4	chr7	126194238	126194438	+	924.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 1 of 23)	intron (NM_028816, intron 1 of 23)	6163.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	4.89943437604291	5.27541906680272	4.58513831078686	4.72067244512435	5.06510850349596	5.03784578762747	4.60787804003995	4.53699093399235	-0.109944672658449	0.772775874840637	0.911052408089747
Merged-chr19-45813427-3	chr19	45813311	45813511	+	604.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145703, intron 1 of 9)	intron (NM_145703, intron 1 of 9)	-1120.0	NM_001276358	80906.0	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	3.75546688483709	3.51709156119039	3.21682940677481	3.34072712946799	3.74989369649238	3.39493263987488	3.39073999927911	3.34242289808137	0.0699469473657547	0.897532736262983	0.961755066043397
Merged-chr1-74125401-4	chr1	74125297	74125497	+	902.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027884)	promoter-TSS (NM_027884)	-144.0	NM_001170641	435626.0	Mm.240447	NM_001034060	ENSMUSG00000061815	Rufy4	F930048N03Rik	RUN and FYVE domain containing 4	protein-coding	4.69797966507721	4.67533825844746	3.79072364666564	4.34428825966942	4.49618407752664	3.97823802900945	4.25917684355584	4.22948081976738	-0.385661564986444	0.411149292794048	0.706564511740688
Merged-chr2-69719564-4	chr2	69719464	69719664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-3524.0	NM_001081086	228005.0	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	6.98746260457638	7.35777724804904	6.98868506023156	6.46933524708563	7.24659076177981	7.36337278738193	6.86191712801288	6.73291191349682	0.135038047890604	0.606330577928787	0.829368409964156
Merged-chr14-10129848-4	chr14	10129731	10129931	+	947.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	245736.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	4.3007523007484	4.2482419756685	4.43327874505637	4.69619387011048	4.6439052859913	4.17158593909861	4.53143076314531	4.34420271082761	-0.00771218226108282	0.984721912683433	0.994414454407789
Merged-chr13-41709664-2	chr13	41709564	41709764	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103448.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	2.77646705816544	2.64028647043092	2.9047505089114	2.94965946650799	2.91774242361259	2.94914417429068	2.9530957071368	3.01950911385562	0.559966473482359	0.362106434906897	0.66735526990214
Merged-chr9-96396643-4	chr9	96396573	96396773	+	895.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32242.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	3.74429217644607	3.98589747374915	3.68803403444496	3.53536052780457	4.25608489486382	4.16611305154333	3.78380084405233	3.79708181776017	0.795234081662394	0.0905160951792958	0.328619700583612
Merged-chr10-60286761-4	chr10	60286639	60286839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	2278.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	6.07171040365448	5.74173191496549	6.59159855488586	6.90570931659687	5.89496280720098	5.49584105757168	6.37593506228433	6.00259108073692	-0.662375481276644	0.0522413751990449	0.238013751858978
Merged-chr2-30952944-4	chr2	30952842	30953042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133673)	promoter-TSS (NM_133673)	-59.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	6.57059179460895	6.78143114025004	6.10878272045472	6.32766576097657	6.7789922088199	6.8995843031245	6.61609353141845	6.84155940993673	0.457577136939022	0.0504051811656422	0.232928026370788
Merged-chr9-113805520-4	chr9	113805421	113805621	+	900.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286603, intron 1 of 4)	intron (NM_001286603, intron 1 of 4)	-7065.0	NM_001286601	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	4.457152480813	4.5891558647899	4.37383866391778	4.32623471169571	4.42433066407148	4.62843099000769	4.26527644609195	4.08082394501072	-0.163473140201308	0.676590314017547	0.867222067684077
Merged-chr6-88067913-4	chr6	88067822	88068022	+	988.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-16551.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	5.04438576458819	5.15180018599446	4.8598788126527	5.25527164994942	5.11861621467705	4.95686684246832	5.24021750965008	5.34670239489672	0.134231380643313	0.669425128850706	0.863479905771059
Merged-chr17-46880004-4	chr17	46879898	46880098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-10623.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	6.51301136816384	7.03782649014292	7.10738957082957	6.7075440993547	6.3242498447669	6.70794608424207	6.35747287467368	5.9727147693688	-0.719526382822806	0.00511373964202156	0.0482874600662579
Merged-chr10-78009839-4	chr10	78009750	78009950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008826)	promoter-TSS (NM_008826)	-43.0	NM_001358793	18641.0	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver, B-type	protein-coding	7.23347377847098	7.43039087698645	7.0468325807576	7.23761460676692	7.32303362832668	7.22426495177363	7.50532633480107	7.00332274399484	0.0439650477329636	0.826539307173451	0.933459863315126
Merged-chr2-168979927-4	chr2	168979849	168980049	+	838.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	1680.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	3.77183848710039	3.80673891074016	3.60250363067761	3.64149909274909	3.98991806626774	3.65834469962007	3.95141914006484	4.21339366561242	0.758076238408412	0.0962616924508558	0.340023373875215
Merged-chr11-70020896-4	chr11	70020794	70020994	+	969.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007864, intron 1 of 19)	intron (NM_007864, intron 1 of 19)	2289.0	NM_007864	13385.0	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs large MAGUK scaffold protein 4	protein-coding	4.9303297928065	5.16110827170667	4.85498638784113	4.58657433240909	5.38343627176669	4.73244019068208	5.59575676046007	5.06771397102341	0.668968959525618	0.065200628099523	0.271748185238081
Merged-chr5-138754957-4	chr5	138754821	138755021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030565)	promoter-TSS (NM_030565)	-160.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	6.65882754365855	6.50798417182003	6.61711043314454	6.52569936980279	6.01479756977614	6.04306494147955	6.41277599706639	5.91016501466016	-0.701612752664047	0.00259243176467812	0.0285115421165055
Merged-chr19-41104618-4	chr19	41104504	41104704	+	932.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011904, intron 12 of 20)	B4|SINE|B4	-27491.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	4.36241753868393	3.85036947779517	4.45332456062226	4.98460216608237	4.84893665008708	4.44543133194682	4.55641744337275	4.72382931821905	0.349288877647582	0.452945184872019	0.737167480329507
Merged-chr7-45095597-4	chr7	45095497	45095697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357117, intron 4 of 6)	intron (NM_001357117, intron 4 of 6)	-3384.0	NM_001355045	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	7.75647460630204	7.24819110613476	7.9002861019095	7.82017145062849	6.90265436389345	6.46085164316951	6.92516744179799	6.81210069652461	-1.23655645017181	4.19118395032282e-08	1.96008069908034e-06
Merged-chr8-124912128-4	chr8	124912016	124912216	+	897.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053207, intron 3 of 4)	intron (NM_053207, intron 3 of 4)	14230.0	NM_001111141	244666.0	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	5.74187261077996	5.18356854561141	5.51716863680053	5.68885908998234	4.61462952500061	4.71024497387823	4.82546964168686	5.23774431546723	-1.29722660240608	0.000149313460466213	0.00284322707397661
Merged-chr2-129431520-3	chr2	129431412	129431612	+	785.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60373.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	3.82347520285966	3.44675037635463	3.62814720241397	3.78525602478461	3.99877639495211	3.57379465985556	3.32184166019566	3.3954160495088	-0.207219997414176	0.703338314151068	0.880690314212345
Merged-chr16-91461886-4	chr16	91461787	91461987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3217.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	7.46020644448121	7.58761328764175	7.33384253718928	7.06521591780728	7.46637777991957	7.36913427242327	7.34781609795721	7.42801569247555	0.0541341723659032	0.782743471982373	0.915368158906363
Merged-chr18-4312104-3	chr18	4311999	4312199	+	883.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40854.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	3.37843804439431	3.10377793328553	3.52947781680098	3.46916970324947	3.16713800123608	3.04796645029584	3.46621111066555	3.07907764234126	-0.664054056859352	0.24893349672271	0.560155455337182
Merged-chr13-89885345-4	chr13	89885243	89885443	+	839.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028012, intron 7 of 7)	B3|SINE|B2	-142831.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	3.79364864025472	3.39993248800336	4.06801410912467	4.20847477723584	3.71302464626055	3.69010332073847	3.778463905315	3.62973364223515	-0.609032841727976	0.236538268707979	0.546577661329488
Merged-chr17-35235860-4	chr17	35235739	35235939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023179)	promoter-TSS (NM_023179)	-24.0	NM_010909	18038.0	Mm.300795	NM_010909	ENSMUSG00000042419	Nfkbil1	Def-7|IKBL	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor like 1	protein-coding	6.9211364583435	6.93798565628793	6.4286394347313	6.63330545108924	7.34168629736802	7.08608640423422	6.92601324184191	7.32909434120722	0.614442225196	0.00529519568764584	0.0496517894679151
Merged-chr8-85557332-4	chr8	85557228	85557428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2057.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	5.25631020691683	5.3012842459572	5.41804093864752	5.37944757161562	5.99437176818744	5.78831562424683	5.61099149372815	5.84552397939846	0.813346779447895	0.0023366147786406	0.0263661863235351
Merged-chr3-7755714-4	chr3	7755623	7755823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-141963.0	NM_001313888	16196.0	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	7.17565257378629	7.002633298582	6.80720910223685	6.84991365680668	7.31587408456636	7.16348177237835	7.24629697393215	7.09213815061752	0.345800112918162	0.0752780824719214	0.296246952632769
Merged-chr17-34633474-4	chr17	34633379	34633579	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3793.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	3.72814497610403	3.83073896173191	3.54047129737633	3.67313792108743	4.4697254957366	4.45893939677492	3.87744513892993	3.89162785556878	1.3846758063352	0.00312005356819041	0.0329596754126187
Merged-chr6-72165893-3	chr6	72165797	72165997	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-42700.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	3.80173704784666	3.36023878420118	3.6462863073819	3.8170975617723	3.75554968990501	3.70712640372861	3.68553350209117	4.02334727471626	0.365926631938474	0.453510482898539	0.737568492945097
Merged-chr5-121618971-4	chr5	121618880	121619080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178799)	promoter-TSS (NM_178799)	-42.0	NM_178799	338350.0	Mm.482918	NM_178799	ENSMUSG00000042647	Acad12	9330129D05Rik	acyl-Coenzyme A dehydrogenase family, member 12	protein-coding	6.70473404460365	6.81948273379322	6.78248729292827	6.9850963218716	7.4141663311352	7.03188885810647	7.09482068790939	7.14798015117382	0.484482236080807	0.0170609260468671	0.114889276735095
Merged-chr5-146769757-3	chr5	146769613	146769813	+	594.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	25243.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	3.21547733114369	3.3204953206244	3.44829497951646	3.20915676992971	3.57222314888195	3.45062535398555	3.32485150723929	3.44634847247358	0.564111905154205	0.270878173328106	0.582670886352706
Merged-chr6-108829914-4	chr6	108829821	108830021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138677, intron 1 of 11)	intron (NM_138677, intron 1 of 11)	1280.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	6.24067433195532	6.49780905364623	6.49875521757644	6.42068973786194	6.55128077668193	6.29221367543912	6.83469852512841	6.60519608209586	0.243772533027085	0.278942079234234	0.591146597992877
Merged-chr5-146231736-3	chr5	146231643	146231843	+	949.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001359990, exon 1 of 13)	exon (NM_001359990, exon 1 of 13)	493.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	3.97731470456458	4.19161634300868	4.59579670761395	4.02795769025726	4.00584493682527	4.34605444962096	3.96160959042969	4.02740219347285	-0.314072909489049	0.477585552937639	0.753751558669368
Merged-chr5-66105571-4	chr5	66105471	66105671	+	984.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-7392.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.63069585653561	4.88658291121681	5.3710043174201	5.6698108270592	5.47496977648578	5.2211276066727	5.34418250468321	5.11172542050452	-0.235844232004666	0.475876133475726	0.752603574391689
Merged-chr2-165983761-3	chr2	165983605	165983805	+	849.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8932.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	3.56715564027022	3.43565547276257	3.56765211894285	3.45674591573874	3.52557060851548	3.78793999400388	3.49973347973018	3.45491945833824	0.218987908050792	0.65370952009337	0.855149414296956
Merged-chr3-38128690-4	chr3	38128605	38128805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79414.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	5.51529475429083	5.51452197284016	5.80994632355799	5.92699187519608	5.34909895527777	5.3138117895387	5.54213767668138	5.30333611907542	-0.582690912857679	0.0409854194335369	0.20473852637105
Merged-chr16-77014911-3	chr16	77014822	77015022	+	907.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	853.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	3.47901174377182	3.1451195034118	3.53192359748296	3.30419003145475	3.38573495680515	3.54015095925881	3.35517175966795	3.58010918921809	0.341127260409086	0.510661410846589	0.774902862315845
Merged-chr8-120828466-3	chr8	120828365	120828565	+	809.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89826.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	3.72934416027935	3.53392554149588	3.09122119705794	3.26175948149726	3.699585575195	3.53560091173545	3.56937536240071	3.47531210708147	0.509231864612393	0.343976750741193	0.652549843655808
Merged-chr19-17276708-3	chr19	17276622	17276822	+	923.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62783.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	2.94510291423501	2.86095419134307	3.03130390955261	2.34791536250797	4.57410392771499	4.20701739475419	3.68147347161818	4.14670703510167	7.48527154841832	7.09401993923654e-16	1.31839489622694e-13
Merged-chr10-80034200-4	chr10	80034074	80034274	+	958.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	5485.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	5.48252115675384	6.07328334197434	5.02805081659879	4.99763222420041	5.76980742269337	5.81142446941895	5.07875484320006	4.94463915497806	-0.0200225525801207	0.960899503593114	0.986028483619322
Merged-chr10-53980059-3	chr10	53979956	53980156	+	938.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 5 of 12)	intron (NM_008548, intron 5 of 12)	95740.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	4.35139604305554	4.08776735139178	4.72955582825647	4.96632055317927	4.03982311709835	4.4821252619726	4.14555773052515	4.05531921614172	-0.949814681305282	0.034968322234464	0.185190054360943
Merged-chr6-115650024-4	chr6	115649936	115650136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029780, intron 1 of 16)	intron (NM_029780, intron 1 of 16)	25852.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	5.5043624749698	5.49400837139032	5.4513325297458	5.6557958135224	5.35049260584179	5.24649713670462	5.216203144136	5.20533527273726	-0.494096186379621	0.0777419320031134	0.301541767644794
Merged-chr7-80688914-7	chr7	80688815	80689015	+	942.828552	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173863)	promoter-TSS (NM_173863)	-38.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	4.33030755660965	4.53452318948205	4.08239124541079	4.03036673768693	4.38400948574364	4.50559035713438	4.72803211761698	4.57449852994819	0.697830126226138	0.0771489962982186	0.300338460266402
Merged-chr12-112956040-4	chr12	112955947	112956147	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13905.0	NM_001316724	66174.0	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	4.5701808963225	4.57155716168429	4.20927545147039	4.42851707256875	4.56944429634968	4.17005753076409	4.82830012672945	4.78444770245671	0.358735819994854	0.358036190341887	0.664095322276096
Merged-chr2-104491570-1	chr2	104491470	104491670	+	570.0	f0_balb.idr	intron (NM_010434, intron 1 of 15)	intron (NM_010434, intron 1 of 15)	2919.0	NM_010434	15259.0	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	3.26727029410096	3.04779112782438	2.75067703486802	3.1991425709987	3.12877642486569	3.26742639089089	3.25436742728455	3.15457504190178	0.442409369575969	0.459889196017177	0.742271214480192
Merged-chr6-100210919-4	chr6	100210853	100211053	+	976.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76405.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	4.81500885941032	4.50450696558798	4.66883992712771	4.88482536810778	4.556798577884	4.8018859397541	4.6471671297294	4.62627766465896	-0.175506421933599	0.617100656181709	0.835322676220102
Merged-chr4-106839058-4	chr4	106838969	106839169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-34062.0	NM_001347159	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	6.56505657302568	6.59896359051745	6.24046669037512	6.48226873713095	6.80120648235835	6.45877854703728	6.54845443758054	6.69731789129108	0.232428500700927	0.288215654627287	0.60027218166888
Merged-chr11-87853254-4	chr11	87853181	87853381	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039684)	promoter-TSS (NM_001039684)	56.0	NM_001039684	380718.0	Mm.24404	NM_001039684	ENSMUSG00000034121	Mks1	AK190930|B8d3|avc6	Meckel syndrome, type 1	protein-coding	5.046786502661	5.19606829345217	4.80096435641222	5.03588557029097	4.79245708949783	4.85606153497631	4.92391811899371	4.79782816229079	-0.37993199279317	0.238397211155747	0.548817073412948
Merged-chr14-17905766-3	chr14	17905682	17905882	+	999.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-75862.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	3.99850180921207	3.80039150953083	3.9452303998303	4.39705887090334	4.14946353480989	4.06909350645292	4.45672944729751	4.57938558550082	0.625320138301269	0.172951843969885	0.466768002651567
Merged-chr14-47649733-4	chr14	47649640	47649840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347528, intron 1 of 37)	CpG	429.0	NM_001347524	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	4.81074327901182	5.01981815075222	4.81151954867173	5.20648337595987	4.89318550636563	4.94768287465326	4.86369174011196	5.05430378060172	-0.107310207024267	0.744541469840204	0.899296531468148
Merged-chr15-101246434-4	chr15	101246330	101246530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-20416.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	8.99508379010248	9.0144296617087	8.86345016373082	8.76723716250585	8.96762904354178	9.07227847910369	8.96690568258671	8.73938108546368	0.0390043826409612	0.800350076208556	0.923040237917604
Merged-chr2-122150673-7	chr2	122150593	122150793	+	826.68573	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009735, intron 1 of 3)	intron (NM_009735, intron 1 of 3)	3006.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	3.69453344053302	3.93571331574978	3.80081268127901	3.57638979124312	3.89858821530764	3.92081073637166	3.78510021940589	3.74689452147627	0.271416999697813	0.551008739088071	0.798799956417849
Merged-chr17-23829195-4	chr17	23829092	23829292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026305)	promoter-TSS (NM_026305)	-83.0	NM_026305	67673.0	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	7.38585761031651	7.42223912551501	6.85411075810262	7.07016051315615	7.28999525605624	7.22283293999453	7.41596443276787	7.30236971130614	0.147448517312303	0.471882017944977	0.75015310499252
Merged-chr19-6277826-4	chr19	6277730	6277930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 1 of 4)	intron (NM_010119, intron 1 of 4)	934.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	6.36696733789309	7.17584073134086	6.84084824680743	6.15344482662669	6.82782658105993	6.78762726010368	6.66784861073871	6.28477085075141	-0.0440827762244517	0.878907353996462	0.954717086851438
Merged-chr7-100863475-4	chr7	100863365	100863565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177073)	promoter-TSS (NM_177073)	-52.0	NM_177073	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	7.18069585383417	7.25873831402404	6.92096652486876	6.86255250595215	7.32314318934648	7.45563135690211	7.21125442689732	7.22097714012058	0.337270661119177	0.0885413604818933	0.324709438803683
Merged-chr7-109781542-4	chr7	109781394	109781594	+	828.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020610)	promoter-TSS (NM_020610)	51.0	NM_020610	78593.0	Mm.275374	NM_020610	ENSMUSG00000034825	Nrip3	A330103B05Rik|D7H11orf14|ICRFP703B1614Q5.2	nuclear receptor interacting protein 3	protein-coding	3.82770189063395	4.19707332523272	4.20538463020249	3.95957329462569	3.92006338281886	3.83324802448197	3.91715050956571	4.07416890758015	-0.310102814371108	0.476609225242887	0.753093932967774
Merged-chr16-22266001-4	chr16	22265894	22266094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009186)	promoter-TSS (NM_009186)	11.0	NM_001330554	20462.0	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	8.04332250378842	8.08723574096281	7.7805203424622	7.84457510606807	8.1763814529576	8.40642359397089	8.10755989035157	8.14080921346939	0.344712714526189	0.0429104104364849	0.210715426316562
Merged-chr6-118419540-4	chr6	118419527	118419727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194339)	promoter-TSS (NM_194339)	-210.0	NM_194339	213895.0	Mm.25269	NM_194339	ENSMUSG00000030138	Bms1	AA408648|AU020092|AU043373|BB007109|BC030906|Bms1l|mKIAA0187	BMS1, ribosome biogenesis factor	protein-coding	7.12959440546037	7.41581771759107	7.57947333698579	7.28182154663351	7.19997826104756	7.41117833654694	7.24142292163746	7.37519110498686	-0.0721043077619647	0.705549037766419	0.881759346486013
Merged-chr4-58586154-4	chr4	58586053	58586253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32662.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	6.8331583386612	6.8894707695128	6.82037316231596	7.29631462511978	6.77701797571653	6.69844425485667	7.02694484435977	6.71309198494819	-0.254808277658807	0.25164393623563	0.56294436285486
Merged-chr13-112443356-4	chr13	112443251	112443451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20719.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	5.568032297841	5.29249696833488	6.01129290931575	6.21694279667224	5.58562338616877	5.94807372228371	5.62156925607516	5.50854580248737	-0.27441742977051	0.397148814875767	0.695612493933522
Merged-chr14-123837601-3	chr14	123837513	123837713	+	936.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145467, intron 3 of 10)	intron (NM_145467, intron 3 of 10)	-150022.0	NR_045479	69393.0	Mm.491348	NR_045479	ENSMUSG00000099994	1700024B18Rik	-	RIKEN cDNA 1700024B18 gene	ncRNA	4.24707990015403	3.99025543877148	4.52186495481358	4.71396686844484	4.08416688109693	3.90100626071109	3.93864328783058	4.10682832921759	-1.00107838061952	0.0252280254685593	0.149379759567733
Merged-chr10-94961481-4	chr10	94961370	94961570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-16892.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	5.83578584463187	5.88795237542858	5.97040875516192	6.39562269072121	5.54993989691648	5.47156406714221	5.18945331918667	6.19673342197586	-0.640049743021017	0.0502887071593204	0.232628556144769
Merged-chr17-21567001-5	chr17	21566892	21567092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357347)	promoter-TSS (NM_001357347)	14.0	NM_001357347	381066.0	Mm.441097	NM_001002008	ENSMUSG00000067931	Zfp948	-	zinc finger protein 948	protein-coding	5.04691148621701	5.28977908282241	5.30652167217584	5.30633263579293	5.80301422106759	6.24113019663764	5.98120311356358	5.94878389206609	1.24479537753409	5.77754525164616e-06	0.00016874841750797
Merged-chr11-118104185-4	chr11	118104101	118104301	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 19 of 80)	MER74A|LTR|ERVL	25018.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	5.57580901797192	5.5717500634032	4.74439625750506	5.24996725425937	5.30783191861113	5.61703520149764	5.8608503072963	5.52071400086219	0.453776104870685	0.174531448803505	0.469003850588369
Merged-chr8-11463882-4	chr8	11463809	11464009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-14020.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	8.01063881230363	7.87537238664344	8.18381740379035	7.97386169863565	8.04371457166903	8.34349737681052	8.20304833647143	8.21933713073408	0.243553223142526	0.141937968823342	0.419176943111637
Merged-chr5-45498377-3	chr5	45498266	45498466	+	835.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024434, intron 4 of 12)	intron (NM_024434, intron 4 of 12)	4992.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	3.6808445087935	3.70859307298402	3.62971094242358	3.83155716833748	3.39845852098387	3.44833285736789	3.66620603802414	3.62768439922494	-0.598610888357162	0.218623404300635	0.525918256606
Merged-chr11-68623625-4	chr11	68623520	68623720	+	851.604126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36583.0	NM_177779	276920.0	Mm.123046	NM_177779	ENSMUSG00000045915	Ccdc42	A530001H01Rik	coiled-coil domain containing 42	protein-coding	4.11704656579734	4.03241712789126	3.73277330598154	3.8593867118086	3.96794175084149	4.42533451407034	4.19060632221688	4.68251369060262	1.00516848618969	0.0237427055292902	0.143352450323975
Merged-chr19-32259267-4	chr19	32259164	32259364	+	910.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 3 of 9)	intron (NM_144792, intron 3 of 9)	-48251.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	4.66478752250023	5.15830451567897	4.90641291429218	5.26678257541924	5.20378118272819	4.84449195304954	4.72901245790651	5.13645405151076	-0.0673865677982747	0.848778324132771	0.942867724786917
Merged-chr16-45090327-6	chr16	45090227	45090427	+	883.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3684.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	4.37250193839005	4.36590434840915	4.45448906365639	4.6682965243397	3.9971633458525	4.16428032834042	4.26740958630256	4.2836786316634	-0.752599998843352	0.0580612350561174	0.253030101638363
Merged-chr6-50112957-4	chr6	50112870	50113070	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361248, intron 1 of 13)	intron (NM_001361248, intron 1 of 13)	2110.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	5.34191822161546	5.06850376983662	5.22892410056172	4.90126139514754	5.03009757765761	4.94693337685675	5.46819013730519	4.84647377378015	-0.0679618445552702	0.839979650344556	0.939166584762349
Merged-chr16-25036529-4	chr16	25036436	25036636	+	751.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23103.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	4.37904534330298	4.41834371579268	4.01557188342413	4.26898607455448	4.11568854633298	4.4678433735915	4.14634832831677	3.78513850948448	-0.330871315030405	0.445941685708548	0.731738237991726
Merged-chr7-80184486-6	chr7	80184397	80184597	+	929.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-2344.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	3.44312489432879	3.57481640442343	3.31159040543396	2.9472397357205	4.06789544433408	3.9492067585699	3.54959721124728	4.03862514589514	1.87271240174859	0.000545117613694227	0.00827135506824587
Merged-chr1-134415392-4	chr1	134415304	134415504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306069)	promoter-TSS (NM_001306069)	26.0	NM_028320	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	8.37133966690034	8.47491585049692	8.42576673237418	8.27801129135815	8.47689602099467	8.65938272004654	8.74476321235368	8.57201610842425	0.288495488812324	0.0605997605234198	0.260075431213275
Merged-chr11-86652358-2	chr11	86652258	86652458	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 5 of 11)	intron (NM_001356531, intron 5 of 11)	18917.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	3.9165623379063	3.84837804493251	3.52314692345764	3.94523742866464	4.02779501253037	3.88168363023557	3.99310345735618	4.00830002651151	0.422176907441948	0.347320421695083	0.655440911390698
Merged-chr8-69792838-4	chr8	69792768	69792968	+	770.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133224, intron 1 of 25)	intron (NM_133224, intron 1 of 25)	1705.0	NM_133224	170759.0	Mm.186066	NM_133224	ENSMUSG00000031862	Atp13a1	Atp13a|Cgi152|catp	ATPase type 13A1	protein-coding	3.65303539470943	3.75737300526808	3.81592296195694	3.91102473289149	3.51685567063828	3.93644767011614	3.94258772856936	4.00227421106831	0.172965150899641	0.713652423141331	0.885468561919243
Merged-chr12-76594257-7	chr12	76594129	76594329	+	880.619019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 32 of 35)	intron (NM_013675, intron 32 of 35)	-46304.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	3.31928072827745	3.34943478065329	3.3766069482973	3.45746737531999	3.14549341298694	3.59913926686018	3.12283427901641	3.42915458219247	-0.169405519976774	0.755481247456225	0.903766998124101
Merged-chr1-191963501-3	chr1	191963395	191963595	+	945.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13875.0	NM_001177900	74023.0	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	3.93402700555766	4.03735053315982	3.70156030201369	3.95354154871383	3.60008132080623	3.16864931706397	3.34089306476468	3.47700152051084	-1.61285962841176	0.00298020667205906	0.0318271764006739
Merged-chr1-131089916-4	chr1	131089808	131090008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	7935.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	5.38040698296595	5.61514811177399	5.8332440582471	5.66340147797132	5.34698835987816	5.29353655132062	5.41319315181461	5.37759889572024	-0.481103409788609	0.0834286733721244	0.313933682700066
Merged-chr9-42124018-2	chr9	42123918	42124118	+	761.916626	f1_balb.idr|f1_c57bl6.idr	exon (NM_011436, exon 1 of 48)	exon (NM_011436, exon 1 of 48)	279.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	3.32210106546127	2.8604077107294	3.26468604361419	3.17140608271127	3.26020942753737	3.64920186403196	3.36404176398036	3.32071423537051	0.863035211674074	0.12778521851939	0.397718218286463
Merged-chr10-42093356-1	chr10	42093256	42093456	+	554.0	f0_balb.idr	Intergenic	Intergenic	-74974.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	2.98567545941641	2.99015252865342	3.2102995985784	3.03376776153405	2.78045688525909	2.74309532574138	3.14476431527906	3.04429913904393	-0.508432732583154	0.410571495879588	0.705950758331354
Merged-chr9-50540360-3	chr9	50540246	50540446	+	900.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359610, intron 6 of 10)	intron (NM_001359610, intron 6 of 10)	-11705.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	3.72595534555011	3.34456500657662	3.77308767067658	3.66966647093412	3.4433069940881	3.58000823483093	3.71013890092945	3.13521871683628	-0.500787848473252	0.354439193169533	0.661127550592616
Merged-chr5-142443673-4	chr5	142443555	142443755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-20276.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	7.4424468819008	7.95167118989346	8.0814803099744	7.42306052800912	7.11032542050005	7.13848647014278	7.1184790062187	7.11277738299142	-0.846508619573716	0.00011227269017126	0.002235372815021
Merged-chr19-28659367-3	chr19	28659286	28659486	+	880.455566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175459, intron 2 of 10)	intron (NM_175459, intron 2 of 10)	-18838.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	3.71618834485799	3.52052050485567	3.57068180096638	4.01481546503495	3.18431843578855	3.4607712120578	2.99173874471624	3.28149108309595	-1.75749402801817	0.00259885989072352	0.0285645843362893
Merged-chr5-3382483-3	chr5	3382363	3382563	+	866.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	38570.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	3.5379981780532	3.87076159357803	3.59439587631117	3.6179271791949	3.65477672885994	3.81712497286959	3.40852632403334	3.69762462850474	-0.0341939009032054	0.94404508351285	0.979899564874466
Merged-chr7-30917416-4	chr7	30917314	30917514	+	954.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-2492.0	NM_010758	17136.0	Mm.241355	NM_010758	ENSMUSG00000036634	Mag	Gma|siglec-4a	myelin-associated glycoprotein	protein-coding	4.5800713730768	4.19523729892947	4.3283993996329	4.42924037979544	4.78370055026879	4.25466271268599	4.48134104644044	4.6872046639048	0.421399996169677	0.273801057479097	0.585497971228284
Merged-chr11-102411923-4	chr11	102411842	102412042	+	991.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20B|DNA|hAT-Charlie	-4425.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	5.74883950312667	6.33493316852435	5.50292496885268	5.19390886495475	6.08163158451536	6.15192873503718	5.86106134897276	5.338558730196	0.213004326281323	0.551028942013357	0.798799956417849
Merged-chr11-86653702-3	chr11	86653641	86653841	+	819.714294	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 5 of 11)	intron (NM_001356531, intron 5 of 11)	17534.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	3.59332102459017	3.21403770735112	3.26938679670034	3.06941797065534	3.59248644584796	3.31956409394054	3.25768452514094	3.59163470780452	0.570055212360735	0.299895709496588	0.612178295179839
Merged-chr7-105651340-4	chr7	105651233	105651433	+	977.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153393, intron 4 of 4)	intron (NR_153393, intron 4 of 4)	10888.0	NM_001360054	14356.0	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	4.53246894890458	4.4457130932991	4.40495221003429	4.35619921793346	4.60939781738113	4.85590761290282	4.69901446203604	4.26017049406668	0.428121209712978	0.248778404039066	0.560019054692692
Merged-chr17-10344881-4	chr17	10344883	10345083	+	976.5277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20381.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	3.71267663957251	3.81369485416698	4.06142736699308	4.08922374325405	4.13885194394384	3.99471575610235	3.69927347166312	3.71121571308662	-0.0800144700356937	0.864585776487273	0.949198738078594
Merged-chr8-109750401-2	chr8	109750301	109750501	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12662.0	NM_001080930	52335.0	Mm.276770	NM_001080930	ENSMUSG00000069895	Atxn1l	AW558552|Boat|C330011L24Rik|D6Mgi37|D8Ertd587e	ataxin 1-like	protein-coding	4.01584589680293	3.76392905563728	3.43238328900328	3.38555514514362	3.36947901670767	3.7778088381545	3.53602602277193	3.43064293206735	-0.427608665567395	0.425021697394472	0.716641115147179
Merged-chr9-21525358-4	chr9	21525257	21525457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_206536)	promoter-TSS (NM_206536)	-820.0	NM_001198794	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	6.24794977753899	6.19669198074979	6.48973901550526	6.61976625868435	6.26054639401002	5.92393993416187	6.05639826864493	6.06143092312479	-0.487422540576631	0.0458964795601903	0.219902094683279
Merged-chr8-18759955-5	chr8	18759828	18760028	+	736.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173189, intron 12 of 13)	MER126|DNA|DNA	-18366.0	NM_007426	11601.0	Mm.439874	NM_007426	ENSMUSG00000031465	Angpt2	Agpt2|Ang-2|Ang2	angiopoietin 2	protein-coding	3.46321228415888	3.41689402288125	3.56320500735061	3.32837699071696	3.00852378986774	3.52676329932091	3.22646648286782	3.0382449487401	-0.854450301026096	0.134236338414265	0.40785454099923
Merged-chr2-180273011-3	chr2	180272892	180273092	+	975.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145851, intron 1 of 9)	intron (NM_145851, intron 1 of 9)	473.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	3.82199377609369	3.80510991052274	3.9198135057669	3.99052122049388	3.84508251915512	3.71982856778197	4.03444269689007	3.47605967861896	-0.299091165481215	0.525216401040038	0.783229855070132
Merged-chr4-132532814-4	chr4	132532771	132532971	+	799.7559809999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007512, intron 3 of 3)	intron (NM_007512, intron 3 of 3)	2543.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	3.16536942939005	3.00188925534544	3.16580032000745	3.05268180186627	3.23006789841173	3.15892355363776	2.69757583098095	3.10720995465845	-0.110510828586483	0.857776297395948	0.946392149155271
Merged-chr7-89981162-4	chr7	89981073	89981273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021876)	promoter-TSS (NM_021876)	-197.0	NM_021876	13626.0	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	5.86156777745377	6.11898723618991	5.81594521326092	5.81650635948012	5.96645886251003	5.47690932725084	5.80978882812155	5.68715419870459	-0.237735308867208	0.372441228432132	0.676226660600623
Merged-chr1-64191727-4	chr1	64191635	64191835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70346.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	6.02629943832679	6.62282015924949	6.19461423637375	6.37162336909734	6.35245322117631	6.22625082733008	5.77914647118794	5.93045571869633	-0.347756297786368	0.194453888323579	0.494891206434022
Merged-chr2-11739755-4	chr2	11739644	11739844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34032.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	7.93635857291962	7.95411219633669	8.35848557387071	8.18391296796818	7.8489433455718	7.88876051006448	8.04728382778917	7.99505796633313	-0.226433444886401	0.197630093712386	0.499044730396766
Merged-chr18-56720094-3	chr18	56719987	56720187	+	852.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010721, intron 1 of 10)	intron (NM_010721, intron 1 of 10)	12274.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	3.50458563632076	3.61616801488202	3.50504338370042	3.1914814597862	3.87067754003646	3.84049213967429	3.7043394360189	3.6150984446472	1.00197333289878	0.0422567154697326	0.208512357048187
Merged-chr12-85608274-4	chr12	85608202	85608402	+	757.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030887, exon 2 of 4)	exon (NM_030887, exon 2 of 4)	8284.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	4.2320546803101	3.93530433574627	4.41774363249378	3.75993314428579	4.11944908238991	3.61869004883002	3.79508546057432	3.86232405093973	-0.628381887181292	0.202174711062793	0.50461441050349
Merged-chr11-20831070-6	chr11	20830955	20831155	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173752)	promoter-TSS (NM_173752)	53.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	5.02145978427384	4.85519813538488	4.64164617348278	4.93932654636979	4.88997406433219	5.22612700941906	4.93077911757122	5.05134150301794	0.288307499196248	0.375521800361307	0.678483235683657
Merged-chr16-91847709-4	chr16	91847610	91847810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 19 of 28)	intron (NM_001110275, intron 19 of 28)	83920.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	6.68263256451658	6.3211029706508	7.31618494474204	7.38318810568076	6.19737325347955	6.09761062902094	7.00384327702534	6.78130777417233	-0.604480776823761	0.0607126040642454	0.2603240562914
Merged-chr8-117280588-4	chr8	117280496	117280696	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	23577.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	5.35623424447746	5.30831516561461	5.06561725581931	5.3717213977424	5.13415030594752	5.13139762090974	5.51691336508023	5.58991304227753	0.120000660342871	0.694250496756684	0.875811600777424
Merged-chr13-12047250-4	chr13	12047132	12047332	+	861.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023868, intron 1 of 104)	intron (NM_023868, intron 1 of 104)	59713.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	4.23260514719664	3.70747815496305	3.89795917434023	4.31284716005883	4.1515257992812	4.12621416826312	4.12778831421239	4.2305772290834	0.215992435355175	0.627201640066973	0.841062274648212
Merged-chr1-172521042-4	chr1	172520971	172521171	+	989.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027972)	promoter-TSS (NM_027972)	-59.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	4.92811909344773	5.34410487649183	4.46584515886997	4.77528141733235	5.49891416999072	5.63861185784258	5.30343292820849	5.56146996183236	1.07712217923374	0.00158779432670896	0.0195532201350895
Merged-chr10-82914287-3	chr10	82914185	82914385	+	742.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47659.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	3.0055695084823	2.90612878174278	3.51184232761752	3.23234431057265	2.79499359115005	2.83905641863525	2.72453366319326	3.12283572375932	-1.30704780403734	0.0488409827273241	0.22841342375481
Merged-chr19-3574809-2	chr19	3574709	3574909	+	991.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360430, intron 1 of 22)	intron (NM_001360430, intron 1 of 22)	940.0	NM_001360430	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	3.18559162521365	2.91776544452922	3.12931453892326	2.83684408769698	3.41795327170392	3.1164055915408	3.05916294125924	3.12768232407252	0.7412870232896	0.207050151655282	0.511049184276
Merged-chr6-72097507-4	chr6	72097422	72097622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011375)	promoter-TSS (NM_011375)	-86.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	7.69275178922892	7.3849878285248	7.87136676140745	7.87393816920646	7.65246496620166	7.79466438267902	7.71301363559002	7.98256053834885	0.0838316029652385	0.662604160982028	0.860115279097678
Merged-chr4-150011930-4	chr4	150011825	150012025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2902.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	5.80221004542027	5.61321697060152	5.6046129404266	5.39520381834127	5.82347862634354	5.83188336487453	5.65405163341384	5.67878714307548	0.263816348443551	0.32069235462996	0.63245145906536
Merged-chr13-18808435-5	chr13	18808424	18808624	+	966.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	91232.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	4.11955717074861	4.25002461161749	4.02372277800455	4.15574751558007	4.12394380443823	4.2902671919178	4.10243396574846	3.97065435333732	-0.0456111301531507	0.910594984517836	0.96671350549607
Merged-chr6-148577866-4	chr6	148577767	148577967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	36442.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	6.69323526560083	6.50084311858351	6.63314693625251	6.92515881811857	6.81712388115861	6.43047790840191	6.91519296570465	6.74802497721604	0.0499268603079222	0.824071319005318	0.932476232435989
Merged-chr7-145090249-4	chr7	145090152	145090352	+	820.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117867.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	3.9414411571499	3.99800949346622	3.99179530302588	3.69916122103022	4.07429291067034	4.01229620922263	4.15450321994419	4.17092295655235	0.558188530796034	0.18660339018183	0.484625049457725
Merged-chr5-99289324-4	chr5	99289232	99289432	+	922.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-36405.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.83216717175211	4.66969765573645	5.04278857255671	4.22850872338252	4.09833143237019	4.29037557066831	4.47729551465308	4.61672286473116	-0.751261861637439	0.0774953606708787	0.301095102035797
Merged-chr2-72197234-3	chr2	72197133	72197333	+	804.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 8 of 26)	intron (NM_001355478, intron 8 of 26)	-88404.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	2.88610156732825	2.66360151904657	2.72613903028529	2.62127382164784	3.50550041259833	3.61577577160306	3.65530244940501	3.44097544055524	3.56178284283812	2.88932997445487e-08	1.39809393780913e-06
Merged-chr3-61309389-4	chr3	61309286	61309486	+	896.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55121.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	4.354691182058	4.50246698141038	4.12517480663499	4.31247034994196	4.11686653655521	4.60609315948796	4.24926610132009	4.0714948485392	-0.147416771250796	0.718638193831634	0.887629976798039
Merged-chr10-121263674-3	chr10	121263579	121263779	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029057)	TTS (NM_029057)	47717.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	5.11824835163393	5.3121572414606	5.05851522521118	5.36822337340046	4.26580955095022	4.797614838418	4.36043363390111	4.32357756462991	-1.66163436333065	4.57426935220508e-06	0.000137206876620567
Merged-chr13-97548729-4	chr13	97548649	97548849	+	978.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11251.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	5.82288491704756	5.22827141420119	5.86563863567791	5.99811010844803	5.21023785281982	4.94782540350487	5.18072793471012	5.45275257966379	-0.969103559531762	0.00262837533423647	0.028835562255798
Merged-chr1-89902382-4	chr1	89902293	89902493	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28783.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	5.61249745061085	5.49261559234585	5.34867133605	6.24556933290841	5.03518805555274	5.07851726732307	4.98998688774483	4.51028643589683	-1.47956406688458	5.48780738616611e-05	0.00122565623451496
Merged-chr6-124542613-4	chr6	124542501	124542701	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001097617)	promoter-TSS (NM_001097617)	-242.0	NM_001097617	50908.0	Mm.219527	NM_144938	ENSMUSG00000038521	C1s1	AA959438|AI255193|AI327365|C1s|C1sa	complement component 1, s subcomponent 1	protein-coding	5.60464838552776	6.06265105387654	5.50092231732751	4.98761635647712	5.42438704032047	5.75424131471266	5.20233895896537	4.96455480441544	-0.385431342820716	0.297501737182047	0.609623334606199
Merged-chr3-20520963-1	chr3	20520863	20521063	+	578.666687	f0_balb.idr	Intergenic	Intergenic	-153786.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	3.11456856196833	3.09553951449879	2.99952936293612	3.11728939283817	2.90688512879491	2.90970383261048	2.98900578617942	2.93632666726238	-0.644955134652011	0.268634553766695	0.580260491970544
Merged-chr15-53107741-4	chr15	53107656	53107856	+	883.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	238427.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	4.0899819076263	4.01983939199154	4.23379650030967	4.24854781321652	4.23079572728922	3.994595640147	4.56392507277475	4.51314252222754	0.456851096737554	0.269193327107335	0.580753412406101
Merged-chr2-164822941-4	chr2	164822838	164823038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178375)	TTS (NM_178375)	252.0	NM_028028	71971.0	Mm.161149	NM_028028	ENSMUSG00000017764	Zswim1	2410003H12Rik|AI850991|BB046916	zinc finger SWIM-type containing 1	protein-coding	8.15293115187302	8.18512858903629	7.8369803485185	7.90090293901276	8.40367121640775	8.16948972926348	8.20923771075608	8.01394782141683	0.238820851163604	0.179543737892413	0.475758894784318
Merged-chr11-98889372-3	chr11	98889262	98889462	+	908.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197940, intron 2 of 7)	MTB_Mm|LTR|ERVL-MaLR	-18527.0	NM_001025779	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	4.20970219357771	3.94422661735328	3.65323694206815	2.96500170960629	3.45374314448126	4.08871234607008	3.69422995654564	3.91248174715021	0.0765441985597321	0.8999158582736	0.962872767772365
Merged-chr4-109419189-4	chr4	109419085	109419285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145948, intron 2 of 17)	intron (NM_001145948, intron 2 of 17)	3538.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	6.17082257270719	6.05211805308629	5.9590395186115	6.35399461415756	5.97058063409848	6.30739745982437	6.38693721788141	5.80766973292088	-0.0324892246232275	0.900988834696847	0.963325736633273
Merged-chr14-120157607-3	chr14	120157491	120157691	+	907.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115156.0	NM_001001490	239283.0	Mm.138520	NM_001001490	ENSMUSG00000044819	Oxgr1	Cysltr3|Gm299|Gpr80|Gpr99|P2Y15	oxoglutarate (alpha-ketoglutarate) receptor 1	protein-coding	3.95788789900516	3.88124159464602	4.0927406387326	4.17490673018205	3.48496258815068	3.6954272757554	3.683852838694	4.09011166299413	-0.820084923749974	0.0868728731782972	0.321455824493555
Merged-chr18-77708579-4	chr18	77708483	77708683	+	846.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178670, intron 1 of 4)	intron (NM_178670, intron 1 of 4)	5427.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	4.43107875173663	4.67165861496408	4.47186559853699	4.26342079590016	4.29309940247849	4.00618394104721	4.19201843209051	4.46894872552215	-0.491994423701752	0.223108215644619	0.531170612293098
Merged-chr18-80294088-4	chr18	80293959	80294159	+	762.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001190373)	TTS (NM_001190373)	37753.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	3.81774889837414	3.73549688757245	3.41070629361601	3.4268481038192	3.41776487513859	3.32923474221327	3.56536693260886	3.72672490976487	-0.28645940114416	0.58172941602053	0.816420227529328
Merged-chr16-22027391-4	chr16	22027303	22027503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027488, intron 7 of 16)	intron (NR_027488, intron 7 of 16)	17919.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	6.64051132001067	6.8123467179761	6.54498440036739	6.55628617315014	6.62832952525432	6.96368172993675	6.52813217535178	6.81041479950669	0.13906541773806	0.518169429403025	0.779362628036693
Merged-chr8-35408041-3	chr8	35407917	35408117	+	768.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32276.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	3.90763277369019	4.39271942457253	4.2939763778661	4.3909691258988	3.39369573256858	3.40272652298567	3.61749213616881	3.62913469852407	-2.33513465835146	5.51439001251106e-06	0.000161725903049248
Merged-chr7-49601346-1	chr7	49601246	49601446	+	863.5	f0_balb.idr	intron (NM_175272, intron 36 of 37)	intron (NM_175272, intron 36 of 37)	35489.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	3.377480497406	3.47899074697799	3.58357456474065	3.69584019787505	2.94952550633313	3.10187787083689	3.24969095932981	3.37609160032084	-1.39748007577042	0.0149317141878864	0.10447070545811
Merged-chr15-89131564-4	chr15	89131458	89131658	+	817.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013871, intron 11 of 11)	intron (NM_013871, intron 11 of 11)	-2858.0	NR_028449	170787.0	Mm.203954	NM_199198	ENSMUSG00000062906	Hdac10	AW548891|Hd10	histone deacetylase 10	protein-coding	4.42157400505061	4.44968599748464	4.0262129548241	4.44655291971071	4.28109249894086	3.98220459055393	3.95888682798829	4.12287844424937	-0.639162929950979	0.130092698959493	0.401507102056801
Merged-chr7-79499965-3	chr7	79499822	79500022	+	803.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040311)	promoter-TSS (NR_040311)	-104.0	NR_040311	101694.0	Mm.41661	NR_040311	ENSMUSG00000097023	Mir9-3hg	AI854517	Mir9-3 host gene	ncRNA	3.4076102418014	3.51918049099547	3.408039030689	3.7248339843883	3.60893354535528	3.57656502287025	3.33853962499639	3.16008663852366	-0.318463580862172	0.556906380301393	0.802235069284239
Merged-chr5-24684825-5	chr5	24684725	24684925	+	937.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016736)	promoter-TSS (NM_016736)	-990.0	NM_016736	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	3.932619519247	3.85121992670715	3.88700571616405	3.72321375333888	3.86412987930779	3.90907286053733	3.4310576146113	3.62507096893617	-0.350356200821199	0.463699372219316	0.744976486222937
Merged-chr13-81371278-4	chr13	81371162	81371362	+	921.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 83 of 89)	Lx6|LINE|L1	261882.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	4.84392773359136	4.66531907373982	5.04806045530061	5.12502103024632	4.89059503798647	5.08819149209457	4.66704261547278	4.64342385930921	-0.218284737294984	0.531698945410105	0.787562360467367
Merged-chr12-85532742-4	chr12	85532661	85532861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58871.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	7.19885272744939	7.08321730286929	7.40614473882356	7.25865833970075	7.01173217474878	7.42094290002238	7.32112309242941	7.26048237286041	0.017329734364025	0.929117238163705	0.974317157505369
Merged-chr16-43209732-4	chr16	43209625	43209825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285805, intron 2 of 10)	L1MD2|LINE|L1	-37559.0	NM_181058	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	5.43173621444819	5.5087039535215	5.73406149163676	6.34427624366164	5.34072808095566	5.69913015819694	5.79820688566446	5.57460068573719	-0.368503831560211	0.265368367079009	0.577001515467012
Merged-chr8-71371679-4	chr8	71371582	71371782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029865, exon 1 of 4)	exon (NM_029865, exon 1 of 4)	384.0	NM_001293800	77090.0	Mm.440170	NM_029865	ENSMUSG00000002396	Ocel1	9430098E02Rik|AI326022|AI593544	occludin/ELL domain containing 1	protein-coding	8.7404497973695	8.93404999615329	8.69066309170319	8.51675086501211	8.64398130793519	8.85546670415441	8.86599016156421	8.52273800805739	0.00353609634459653	0.983390698962922	0.994001401392316
Merged-chr12-98246998-2	chr12	98246898	98247098	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008079, intron 5 of 16)	intron (NM_008079, intron 5 of 16)	12461.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	3.20499879854662	3.15388836767477	3.01149541932097	3.54586238464142	3.40053801112748	3.31575661146627	3.25212076104381	3.31851452838653	0.224436363237066	0.696882716355171	0.877493472584951
Merged-chr11-116784405-4	chr11	116784297	116784497	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8890.0	NM_011371	20445.0	Mm.436887	NM_011371	ENSMUSG00000009588	St6galnac1	Siat7a	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding	6.51832079059542	6.40038236041379	6.25829932126596	6.57679807156411	5.20330782352276	4.95060192564504	5.21480792605524	5.3452711661706	-2.08502802694542	2.04132144650105e-14	3.02706706751038e-12
Merged-chr9-99122933-4	chr9	99122823	99123023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 1 of 23)	intron (NM_029094, intron 1 of 23)	17288.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	5.58457688994431	5.84177399334026	6.00014066879934	6.28864210287702	6.75466741234708	6.37512135120559	6.63224379909741	6.99117517595994	1.08723565661931	6.7766654481897e-05	0.00146301568073004
Merged-chr4-86904258-3	chr4	86904188	86904388	+	747.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290543, intron 4 of 5)	intron (NM_001290543, intron 4 of 5)	29874.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	3.23116382076379	3.17056333548939	3.49342571712923	3.12656785862933	3.3983529302332	2.93422318108013	3.27561479515717	3.22989572585822	-0.111573926533715	0.846636718056025	0.941967608044389
Merged-chr7-27592072-3	chr7	27591988	27592188	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110208, intron 1 of 13)	CpG	536.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	5.28632382896208	5.1991029744985	5.25714694461461	4.77400208624109	5.41397136070215	5.20099559899999	5.26091453875516	5.39706706912879	0.374988614455347	0.2324585151471	0.542052895975608
Merged-chr11-23008380-4	chr11	23008260	23008460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5027.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	5.0357338709627	5.30319751050566	5.29861049222937	5.35720659492088	5.10899783133943	5.17688184882707	5.43719896261914	5.26501451074736	-0.0301079080117289	0.919480611576462	0.970308092934814
Merged-chr6-134073135-4	chr6	134073021	134073221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	37421.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	5.90529849194051	5.96502621810391	5.58595903900212	5.5844172402001	5.8556473046286	5.48622362945341	6.07551587987249	5.63685821300845	0.0393561356622029	0.889016410393211	0.958423402481034
Merged-chr6-65510495-4	chr6	65510361	65510561	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79937.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	4.65287291043713	4.96231622794944	4.81497151083004	4.70367989812269	5.08604175539821	4.69876797592073	5.28334351289195	4.88538394040282	0.453930987668258	0.180943213101615	0.477349133292311
Merged-chr9-55149887-4	chr9	55149793	55149993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346658)	promoter-TSS (NM_001346658)	-190.0	NM_001346658	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	5.0595795567964	5.15875672597931	5.3611419467052	4.75281090651154	4.93400566448277	4.97753881727108	4.85535367134547	5.57694789203569	0.0540346655063202	0.880595503479274	0.955181994949486
Merged-chr12-102721399-4	chr12	102721306	102721506	+	950.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16537.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	4.94231400727769	4.87261680945236	5.27732554811773	4.63025863016539	5.01281548509645	4.89226820599371	4.81132139447334	4.93980028725634	-0.0261933421196814	0.939600921512671	0.978233296167072
Merged-chr13-43778323-4	chr13	43778240	43778440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6772.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	7.03495589384294	7.2087764984003	7.18461855502424	6.90234674123493	6.93632223329306	6.89853009986596	6.93880773129525	6.84895058690964	-0.238125117590525	0.221971239815676	0.530047563717821
Merged-chr5-123151279-4	chr5	123151156	123151356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040398, intron 6 of 16)	MIR|SINE|MIR	9063.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	7.51791020454132	7.4786151842204	7.16220573813886	7.25910220591147	7.25161869311692	7.22905553050226	7.43705457588978	7.54033544164771	0.0127338126174292	0.947105922525425	0.981067488313137
Merged-chr12-105684544-4	chr12	105684447	105684647	+	991.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178613)	promoter-TSS (NM_178613)	694.0	NM_029654	76559.0	Mm.114362	NM_029654	ENSMUSG00000041341	Atg2b	2410024A21Rik|AI047755|AI503411|AW558123|C030004M05Rik|C630028L02Rik|mKIAA4067	autophagy related 2B	protein-coding	5.13898740417033	5.12839128890514	5.48168359368339	5.14976760325056	5.27476289339258	5.06564904072251	4.97785804840332	5.20010204865032	-0.155172802872961	0.613148994851019	0.833119630742334
Merged-chr15-53399827-4	chr15	53399739	53399939	+	977.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-53656.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	4.86864575962019	5.23165222352045	4.86943107705165	5.38398581679542	5.27304397120473	5.26317591302167	4.88562511413676	5.35680649289192	0.146651633731333	0.662059032923806	0.859785067644853
Merged-chr9-21410084-4	chr9	21409989	21410189	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045742, intron 1 of 4)	intron (NR_045742, intron 1 of 4)	1631.0	NR_045742	330902.0	Mm.437044	NR_045742	ENSMUSG00000097665	Gm16853	4930565O14	predicted gene, 16853	ncRNA	4.66996912971968	4.85328419863467	5.01790130234903	4.8777310397184	5.26311624345623	4.89283093858763	5.31660581994446	5.11194714991274	0.582468729379772	0.0680062084988751	0.278385096873337
Merged-chr2-31769641-8	chr2	31769580	31769780	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	9507.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	4.82253600521187	4.74324846654849	4.42530757180298	4.84708244519403	4.98838630654476	4.92183683821656	4.94326906597894	5.5296451828051	0.769016219501882	0.0311617687697371	0.171703323986772
Merged-chr13-56592108-3	chr13	56592013	56592213	+	690.133301	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-17473.0	NM_009369	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	3.85917042053421	3.47622150751275	3.29357016223967	3.47789449210303	3.91136336874814	3.60715775539621	3.69846286624309	4.02832161521773	0.867423769366335	0.0832567555497155	0.313585173207387
Merged-chr4-46304941-4	chr4	46304836	46305036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-39258.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	6.07790455110333	6.15801278672535	5.92644881556277	6.18657484154913	5.87752343017263	6.00684918730077	5.96353788855399	6.11499702047569	-0.177311000716889	0.455593772891061	0.739054394131757
Merged-chr3-105840030-4	chr3	105839933	105840133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24466.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	5.46643284296433	5.35624305302099	5.54544531305852	5.4718574893378	5.20701037338455	5.23523498539848	5.29847652346031	5.35090307755738	-0.341281400721116	0.220686713002058	0.528666225045383
Merged-chr3-41366991-1	chr3	41366891	41367091	+	993.1666869999999	f0_balb.idr	Intergenic	Intergenic	126208.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	4.32412381353526	4.16093870931213	4.43668823342896	4.94274638646669	3.24637918486042	3.37072412112558	3.46969009751136	3.80251947420871	-3.20737822285947	4.85386603216878e-08	2.22898922776608e-06
Merged-chr4-102657419-4	chr4	102657344	102657544	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67601.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	6.06324831079139	5.60010689795164	6.06432757238098	6.18280135192458	5.52762778971572	5.609703203075	5.7087209206973	5.22236149153291	-0.780947339650047	0.0062667250239403	0.0560375905124431
Merged-chr16-93032154-4	chr16	93032037	93032237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-206063.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	5.96101671780194	6.08807914500207	5.50087434198964	5.20132166989582	6.41051285211423	6.04869211924854	5.74777892573058	5.79776490523761	0.49601870404018	0.128772193449294	0.399280186335915
Merged-chr18-67250038-4	chr18	67249939	67250139	+	840.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-4209.0	NM_001357518	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	3.29680855271936	3.7298851889482	3.56447086150927	3.68938656035596	3.93469652666062	3.90887569922691	4.19796604967063	3.88428274232863	1.14333257045327	0.0185596131298438	0.121823561690257
Merged-chr7-33900219-4	chr7	33900116	33900316	+	904.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44769.0	NM_178308	110187.0	Mm.155750	NM_178308	ENSMUSG00000066586	Scgb2b26	Abpbg26|Abpbg4|Abpg|C2d|Scgb2b4	secretoglobin, family 2B, member 26	protein-coding	5.77553666158667	5.39170847225378	5.73278680467086	6.32303887404609	4.61694474979799	4.9300840763851	5.15757934906457	4.82941064929473	-1.76752462503477	5.00217132446158e-07	1.85442475366589e-05
Merged-chr3-36863046-4	chr3	36862921	36863121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172679)	promoter-TSS (NM_172679)	-85.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	8.54693053010209	8.52931103080715	8.63622479712015	8.5570212638623	8.52813508068241	8.69691527601461	8.71973901243612	8.64403907938895	0.0994959489373698	0.492496760604667	0.763537277259366
Merged-chr9-90216560-4	chr9	90216472	90216672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 9 of 12)	intron (NM_194334, intron 9 of 12)	53594.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	7.02988913065621	6.39332825599473	7.40401583281096	7.31909327453764	6.40316853627905	6.60280926269227	6.72175058345191	6.62867304527684	-0.71261100772919	0.00689202899651533	0.0602093638384112
Merged-chr17-49019080-6	chr17	49018980	49019180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027452, intron 1 of 2)	intron (NM_027452, intron 1 of 2)	86498.0	NM_027452	70530.0	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	4.74941055260553	4.23067662040634	4.59122072160733	4.73629997054516	4.46854367418963	4.96006560899208	4.52739217661148	5.30934896033075	0.542890934106244	0.184995112194589	0.482739251761869
Merged-chr6-34176220-2	chr6	34176120	34176320	+	737.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_021435, intron 1 of 9)	intron (NM_021435, intron 1 of 9)	834.0	NM_021435	58246.0	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	3.66367570356241	3.4265145307651	3.29292012848353	3.12662683676325	3.30993438698532	3.27681365390393	3.45120400490769	3.61514058024398	0.124876343466799	0.818706345485026	0.930475502974644
Merged-chr1-86527403-4	chr1	86527292	86527492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008972, intron 1 of 4)	CpG-365	835.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	5.54457108624984	5.87638406556736	5.290562844478	5.11723175133614	6.06743940878282	6.34516061876062	5.95155579108021	5.70437032847565	0.91106344266661	0.00299737326562247	0.0319673406763174
Merged-chr5-99365375-4	chr5	99365219	99365419	+	941.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-112392.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.72192019156622	4.93902613304793	5.10454248337258	4.49473962627216	4.89573184519702	4.18705777088208	4.45733486532249	4.38157083317914	-0.651335057996623	0.117111933156059	0.378565658581541
Merged-chr9-41228938-4	chr9	41228901	41229101	+	909.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22846.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	3.99635718881169	4.04018409133167	4.29846517281217	3.88864826970549	4.16605466856108	3.84751544479241	4.02717882297306	3.84005000249465	-0.182743538679076	0.678749570334414	0.868137421912153
Merged-chr7-27486923-4	chr7	27486828	27487028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018820)	promoter-TSS (NM_018820)	-25.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	8.51301265132767	8.59686201886406	8.42945390581402	8.16602817284622	8.61769493628457	8.59165751677957	8.58123173972161	8.25845353360161	0.115453860108146	0.5109353245025	0.775074357160952
Merged-chr8-122273337-3	chr8	122273219	122273419	+	900.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8822.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	3.60356211416566	3.47124046037579	3.43464124065944	3.52152654104956	3.61433400488128	3.66616176535845	3.7374184888887	3.65383281170563	0.49978955531545	0.288615295033085	0.600630005705931
Merged-chr1-58897743-3	chr1	58897658	58897858	+	838.361084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75724.0	NM_172406	70827.0	Mm.222887	NM_172406	ENSMUSG00000026028	Trak2	2900022D04Rik|4733401O11Rik|AI480836|AW046271|Als2cr3|CALS-C|GRIF-1|GRIF1|OIP98|mKIAA0549	trafficking protein, kinesin binding 2	protein-coding	3.26457662299874	3.57813410860661	3.26492330862782	3.08606043407059	4.50755396092317	4.01159816147916	4.24727621719905	4.1503373354761	2.89033346704351	6.7003035605745e-09	3.69992945801499e-07
Merged-chr17-55892039-4	chr17	55891920	55892120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145490)	promoter-TSS (NM_145490)	-73.0	NM_001360136	224893.0	Mm.294853	NM_145490	ENSMUSG00000003198	Zfp959	-	zinc finger protein 959	protein-coding	6.98762072645992	7.13455836871394	6.94996255454829	6.36619677179989	7.07733927632291	7.33257862788562	7.50866511117245	7.0091519773908	0.504354897713488	0.0392460791190391	0.19935036506202
Merged-chr11-106491620-4	chr11	106491513	106491713	+	876.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3817.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	4.09450534180255	3.93540272532493	3.98915609748515	3.98703022317184	4.55157503518922	4.6562660707236	4.34929337539333	4.40729437721101	1.21180231253014	0.00172892427984798	0.0208829291218903
Merged-chr6-141070058-4	chr6	141069938	141070138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179231.0	NM_018779	54611.0	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	7.46066358744674	7.31667602937997	7.71334023158057	7.79172820923395	7.34890337650009	7.1545192717493	7.96124447104223	7.49459358536329	-0.084151373974872	0.714503804572623	0.885865917211766
Merged-chr11-4195807-4	chr11	4195710	4195910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	8977.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	8.95241338035876	9.19142498030819	8.81954328301145	8.87256745435542	8.9603021324956	8.91354419555304	9.00483262948308	8.8220711874672	-0.0483768522919126	0.754737515521392	0.903419612044162
Merged-chr18-80260560-4	chr18	80260482	80260682	+	863.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025861, intron 2 of 5)	intron (NM_025861, intron 2 of 5)	4276.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	3.90367706081117	3.61267571759785	4.17666114638343	4.3381402103094	3.94448190837877	3.97354502831609	3.83710011918627	3.79676422736325	-0.43337525728359	0.364404400378685	0.669265956462516
Merged-chr7-144447245-4	chr7	144447110	144447310	+	888.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357116, intron 10 of 15)	intron (NM_001357116, intron 10 of 15)	23725.0	NM_007803	13043.0	Mm.205601	NM_007803	ENSMUSG00000031078	Cttn	1110020L01Rik|Ems1	cortactin	protein-coding	4.16404497622713	4.26994304973742	3.97794059367357	4.20394240632123	3.9340322698117	3.93803074437152	4.01026106978779	3.97564915003747	-0.534688014269797	0.199587488833536	0.501474545095065
Merged-chr5-110815645-4	chr5	110815527	110815727	+	945.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-5546.0	NM_001347394	22241.0	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	4.78435815576517	4.70332134792497	4.66982388001813	4.84504738545891	4.90320259303077	4.95685401764076	4.68750875718709	4.54036851019303	0.0563579728325345	0.869017209630509	0.950890741040292
Merged-chr6-114364866-4	chr6	114364751	114364951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-33085.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	5.94592633858529	5.74949463494168	6.11745464202651	6.50012134843258	5.94004000849093	6.00458719224422	5.91666614165504	6.09300331305575	-0.221301284753598	0.421282487534572	0.713912486732454
Merged-chr1-181273051-2	chr1	181272951	181273151	+	686.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61073.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	3.62557672726222	3.53143023485919	3.51917507411202	3.19345452624996	3.78425476327221	3.57815567735071	3.50543649568127	3.62398332561432	0.550859506599577	0.277094792953149	0.589231030012614
Merged-chr11-100626786-4	chr11	100626692	100626892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028024, exon 4 of 4)	3' UTR (NM_028024, exon 4 of 4)	3837.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	7.85787897302621	7.63316884720497	7.81280889769445	7.93197124510123	8.21533717712488	8.20680288460849	8.2520657026772	8.13764923251408	0.495815525554392	0.00219230075959961	0.02509581469404
Merged-chr7-99962066-3	chr7	99961969	99962169	+	782.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 1 of 5)	(CA)n|Simple_repeat|Simple_repeat	18389.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	3.51708003585432	3.19810025396825	3.21073276448647	3.37990666026321	3.11531026329797	2.99089112304805	3.14041122811199	3.0879992169246	-0.967402809057582	0.088969300621591	0.325457182081623
Merged-chr18-67542722-4	chr18	67542634	67542834	+	882.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194355, intron 2 of 14)	intron (NM_194355, intron 2 of 14)	6439.0	NM_176832	68166.0	Mm.208723	NM_176832	ENSMUSG00000024533	Spire1	6030430B19Rik|AI415299|AU022898|AW550622|Spir-1	spire type actin nucleation factor 1	protein-coding	3.99127952117831	3.87488601037249	3.84386091371538	4.32944232032772	4.02999012449791	3.73314759519349	3.87914584421501	3.78843995147745	-0.474950370171921	0.307931635696115	0.620299020722055
Merged-chr17-33781293-4	chr17	33781199	33781399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020581, exon 1 of 7)	exon (NM_020581, exon 1 of 7)	276.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	6.48066719756883	6.34148208141773	6.29665892595716	6.27470437853595	5.88650083168021	6.29790562880585	5.98229714018934	6.11736042139622	-0.422594529440334	0.0717255258370687	0.287680136947439
Merged-chr15-7129972-3	chr15	7129888	7130088	+	888.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358593, intron 1 of 19)	CpG	416.0	NM_001358593	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	3.92326469215889	3.48277396928534	3.71911810002769	3.71540701936577	4.07694293573894	3.59388076942512	4.03970523887008	4.09753499935212	0.725145751330559	0.12394805796029	0.390687220687072
Merged-chr1-131379186-4	chr1	131379114	131379314	+	921.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	(A)n|Simple_repeat|Simple_repeat	-99651.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	4.67887464473169	4.65520993206669	4.30686624164518	4.55205158972613	4.64002455950478	4.65832781432748	4.2400588173734	4.35138338489317	-0.150004461261816	0.692876578059278	0.875178636291779
Merged-chr6-97463947-4	chr6	97463832	97464032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-4646.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	6.98012912748845	7.03164027701785	7.83676894768976	7.35618681671544	7.11388217702777	7.28709152188737	7.46625155819806	7.31673472135	-0.0652152981869936	0.784641901339599	0.916189994839996
Merged-chr2-70978486-4	chr2	70978392	70978592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 5 of 9)	intron (NM_145524, intron 5 of 9)	39882.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	7.63087945871424	7.72383461387258	7.78788220834548	7.70633022938791	7.73790209098366	7.88552468552773	7.78796438966657	7.90012979894628	0.147625399465622	0.363077046047888	0.66823863734402
Merged-chr7-4503969-4	chr7	4503865	4504065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011618)	TTS (NM_011618)	-2285.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	6.28780174912928	5.54796217934805	5.9988253652937	6.27585422765441	5.75288205033569	5.49276519048843	5.35227152233908	5.53115292069502	-0.845192267243251	0.00462677666029128	0.0448493352749406
Merged-chr9-104660021-3	chr9	104659940	104660140	+	891.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	90557.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	4.93332191491435	4.05686895150737	4.96394965519491	5.32365871139501	3.78488872771031	4.00735501309803	4.15818226397576	4.58708512343424	-1.65564034476158	0.000951122344173911	0.0129346460328534
Merged-chr3-121500362-3	chr3	121500270	121500470	+	944.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145394, intron 9 of 14)	intron (NM_145394, intron 9 of 14)	31974.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	3.40699332783208	3.77629259807082	3.75162069164842	4.00386866608332	3.98363800354701	3.64770607866366	3.63260711130507	3.58888841235051	-0.0966130383716415	0.850081293450414	0.943417004014952
Merged-chr1-54586379-4	chr1	54586205	54586405	+	946.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28621.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	3.4904867839604	3.41420420670118	3.64711755299838	3.53044739320004	3.56007693070226	3.14330811986699	3.47742676303525	3.78360502354792	-0.027078418209018	0.959189709813525	0.985438915099186
Merged-chr14-43921930-4	chr14	43921823	43922023	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053112)	TTS (NM_053112)	1445.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	6.07610224348506	5.69355127578366	5.97637143366237	5.65961077671028	5.95076162705681	5.84523021204482	5.74238831998467	5.69129306925251	-0.0489945832549061	0.852787398117398	0.944667489582269
Merged-chr2-57330946-4	chr2	57330853	57331053	+	940.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010274, intron 6 of 16)	intron (NM_010274, intron 6 of 16)	92571.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	4.34309813268933	4.70768048164341	4.79960823392118	5.04008179462435	4.58244140314691	4.42252535384453	4.84369353929174	4.5257867627351	-0.341150510532733	0.37515905110874	0.678207517212341
Merged-chr4-126677604-4	chr4	126677516	126677716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011970)	promoter-TSS (NM_011970)	-27.0	NM_011970	26445.0	Mm.22233	NM_011970	ENSMUSG00000028837	Psmb2	AU045357|AW108089|C7-I|D4Wsu33e|HC7-I	proteasome (prosome, macropain) subunit, beta type 2	protein-coding	7.97164499102159	7.91436053693711	7.25378938433461	7.48505926464892	7.94130610447794	8.27269865602735	7.95469243735159	8.00747967629045	0.469321916736403	0.0276176044506934	0.158544517073627
Merged-chr5-25420783-4	chr5	25420671	25420871	+	785.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081383, intron 2 of 58)	intron (NM_001081383, intron 2 of 58)	78012.0	NM_001081383	231051.0	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	3.41217468547946	3.7741461186728	3.21830192291659	3.58240806939575	3.83347347638406	3.46435692012045	3.76101968648232	3.41090460752602	0.371195491733702	0.488503539533173	0.761344727658502
Merged-chr6-136519087-4	chr6	136518962	136519162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019426, intron 1 of 14)	CpG	211.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	6.94297763459761	7.01167520654682	6.94419115082752	6.76648930340088	7.12164539764815	7.1464589512463	6.85614451334289	7.05114320512122	0.194450517137395	0.319641109602084	0.631524558708573
Merged-chr13-45109155-4	chr13	45109052	45109252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107056.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	8.08048749707137	8.19752871389331	8.18534889697463	8.08793885396535	7.85859595326109	7.88465092287045	7.83714833014414	7.94255160621131	-0.330988763698893	0.0326533642834031	0.177044014040855
Merged-chr5-43206889-3	chr5	43206753	43206953	+	761.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 1 of 7)	intron (NR_028417, intron 1 of 7)	-26610.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	3.37741408575087	3.35973556733906	3.72933329957709	3.84318783068247	3.39493837257644	3.23420204536338	3.36531961287573	3.12238406463879	-1.09776433433428	0.0509602403539812	0.234185483127124
Merged-chr1-58727194-4	chr1	58727079	58727279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 2 of 8)	intron (NM_001355056, intron 2 of 8)	-3373.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	7.2059559240996	7.80030562357301	7.24994493041459	6.92933345381279	7.05635233003719	7.17203730736307	6.90669237160364	6.56540300330916	-0.530551315924373	0.0372184755349842	0.19244325658177
Merged-chr1-139454677-4	chr1	139454586	139454786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009791)	promoter-TSS (NM_009791)	-87.0	NM_009791	12316.0	Mm.168523	NM_009791	ENSMUSG00000033952	Aspm	Calmbp1|D330028K02Rik|MCPH5|Sha1	abnormal spindle microtubule assembly	protein-coding	8.30307514598016	8.41375606300096	8.05851338678891	8.36358622143124	8.37678203908317	8.5206930165668	8.5657907513087	7.90169882839398	0.0914764036011672	0.638157398300882	0.847040716325261
Merged-chr12-76592471-1	chr12	76592371	76592571	+	574.0	f1_balb.idr	intron (NM_013675, intron 32 of 35)	intron (NM_013675, intron 32 of 35)	-44546.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	2.93131810818344	3.0017186418895	2.87494605888542	2.66025494949702	2.66137427723774	2.79199099791175	2.67894474731198	2.61735643099614	-0.886990009407155	0.178980646323271	0.475006093387179
Merged-chr19-56547610-1	chr19	56547510	56547710	+	742.0	f0_balb.idr	promoter-TSS (NM_025811)	promoter-TSS (NM_025811)	512.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	3.16820758581423	3.25983255234489	3.04205154505879	3.42648517977627	3.09791854516778	3.21617611722067	3.3244085328543	3.2821233884062	-0.0562589040154379	0.920086693950114	0.970409558278764
Merged-chr10-121460649-3	chr10	121460552	121460752	+	905.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	15598.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	3.68310529106883	4.00331612067991	3.90717780993155	3.53276605766017	4.44622281023985	4.26836488055232	3.98861243487078	3.79792010398449	1.00384492025553	0.0328798249463492	0.177946552604638
Merged-chr10-122105574-3	chr10	122105458	122105658	+	760.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8456.0	NM_153059	216395.0	Mm.236764	NM_153059	ENSMUSG00000034620	Tmem5	6330415D21Rik	transmembrane protein 5	protein-coding	3.63777424098059	3.50108386944726	3.41866652785141	3.71295968550687	3.74706272081753	3.40511643067218	3.67217176921017	3.41699124077614	-0.0120266486360534	0.981023696107265	0.993120458317485
Merged-chr9-105122043-1	chr9	105121943	105122143	+	777.75	f0_balb.idr	Intergenic	Intergenic	9762.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	2.84729619514487	2.90224115685987	2.90673893782853	3.05159895240866	2.65542568198181	2.68246406759346	2.7124674299109	2.78440604455933	-1.10559806462115	0.0853372364804558	0.318041894659862
Merged-chr9-45405812-4	chr9	45405697	45405897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007503)	promoter-TSS (NM_007503)	-280.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	7.33784513094874	7.45730520559674	7.08578689083715	6.60091189069062	6.97812928437591	7.23894551184346	6.71831786249025	6.58558563212571	-0.342537464376426	0.193058593923034	0.493171032760825
Merged-chr17-27585134-3	chr17	27585102	27585302	+	835.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291046, intron 2 of 4)	RLTR20A2B_MM|LTR|ERVK	-19475.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	2.48795318214174	2.35101451443179	2.40925551504204	2.04070382801242	3.2435171218013	2.94244917761488	2.81535993423866	2.76456979157009	4.12997032012045	1.24891663803611e-05	0.000336729687040804
Merged-chr6-47911809-4	chr6	47911694	47911894	+	853.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR85c|LTR|Gypsy?	-8774.0	NM_145576	232784.0	Mm.196782	NM_145576	ENSMUSG00000052763	Zfp212	Znf212|mKIAA3011	Zinc finger protein 212	protein-coding	3.68519299778126	4.02134903608264	3.86115771221394	4.07588460741597	4.04956962584347	4.23480890401466	4.1358978868772	4.27648236025274	0.624005632754379	0.149125949181613	0.431184018629893
Merged-chr4-144906659-4	chr4	144906560	144906760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	13523.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	6.14324133898983	6.35136090181643	6.89651281739322	7.08823097932067	5.72636830400369	5.820449407775	5.95737147784214	6.22119910372454	-1.12448346540003	0.000139903218603608	0.00269139762080708
Merged-chr2-163710993-4	chr2	163710885	163711085	+	938.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	16948.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	3.87747872729364	3.83126854312072	4.16993566867208	4.4265648329203	4.29799397057481	3.75857185336072	4.19356186586886	3.98052045156385	-0.0838784977049702	0.859703385908331	0.946964210856841
Merged-chr5-21372087-3	chr5	21371972	21372172	+	886.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008013)	promoter-TSS (NM_008013)	-601.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	3.42907800311429	3.57133977331439	3.42947844063554	3.88830458848314	3.8173094035483	3.60690789993293	3.53689827147648	4.06238264309873	0.489643011692625	0.351589147379511	0.658910409408162
Merged-chr6-124913441-4	chr6	124913351	124913551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026988)	TTS (NM_026988)	-1746.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	6.56852876976716	6.56818969018141	7.00462823791598	7.44081564082611	6.5622868802514	6.54961908942059	6.55265080075863	6.87520114230564	-0.456883214659558	0.0879431058725017	0.323515547723334
Merged-chr11-76253305-3	chr11	76253200	76253400	+	972.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9564.0	NM_183263	67390.0	Mm.24886	NM_183263	ENSMUSG00000038046	Mrm3	4833420N02Rik|AI255153|HC90|Rnmtl1	mitochondrial rRNA methyltransferase 3	protein-coding	3.82910569230653	4.17757223038354	3.88857819815523	3.77726173579579	4.54665767280942	4.36982083688611	4.42381459475093	4.40411242601251	1.31230448348499	0.00113522246869321	0.0149002397379889
Merged-chr3-127560714-4	chr3	127560653	127560853	+	911.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197997, intron 4 of 25)	intron (NM_197997, intron 4 of 25)	7264.0	NM_197997	71643.0	Mm.274884	NM_197997	ENSMUSG00000051278	Zgrf1	4930422G04Rik|AI448607	zinc finger, GRF-type containing 1	protein-coding	4.03426002828593	3.8340572586449	4.17825161037371	4.14921194607914	4.22481012410327	3.99613506730151	4.50869634154755	4.26293464337141	0.506925349612875	0.227595382184815	0.5362644148609
Merged-chr19-36928174-4	chr19	36928054	36928254	+	941.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080706, intron 1 of 37)	intron (NM_001080706, intron 1 of 37)	2075.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	4.36569279323542	4.38295584259569	4.53906029287989	4.71904193615223	4.75283163944946	4.23875031714568	4.63276819295633	4.61435152606752	0.129340573977259	0.735482727209996	0.895614633816326
Merged-chr14-27428784-4	chr14	27428688	27428888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114879)	promoter-TSS (NM_001114879)	-46.0	NM_028945	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	7.49672806577335	7.70366768502337	7.45942098425594	7.34931324989135	7.84997855814318	7.67545289079817	7.86247455691473	7.67786827384481	0.35491558405999	0.0459399474942644	0.219969644466309
Merged-chr15-53328240-3	chr15	53328150	53328350	+	778.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	17933.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	4.02498596758837	3.73504917855552	3.68648854283977	4.38153481735423	3.52874185279084	3.56045833016655	3.55783975020564	3.79067394789491	-1.16699832624208	0.0230213164559913	0.140486370719648
Merged-chr9-27030103-4	chr9	27030034	27030234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178027)	promoter-TSS (NM_178027)	-40.0	NM_178027	69091.0	Mm.218717	NM_178027	ENSMUSG00000031988	Vps26b	1810012I05Rik|2310075A12Rik|AI848392	VPS26 retromer complex component B	protein-coding	6.82439630656859	6.72077365303302	7.12138903370186	6.9192723515081	7.34912345632924	6.95912001954825	7.24598725916794	7.21539929392215	0.417661059094412	0.0386431980124737	0.197287633863855
Merged-chr10-4611546-3	chr10	4611445	4611645	+	830.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302532)	promoter-TSS (NM_001302532)	-444.0	NM_001302532	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	4.04654821545237	3.42836674760485	4.12718003553157	3.62563582802483	3.89621116192582	3.46742227064404	3.6494599181569	3.7687737472501	-0.354694477346672	0.499827191844162	0.768522232049675
Merged-chr1-33903837-4	chr1	33903727	33903927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	3794.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	7.2388910736569	7.86194170884302	7.32648975277361	7.23055963100181	7.50949440302793	7.61332484563977	7.2899804102355	7.0808039474409	-0.0679166020177475	0.766293471220497	0.908586859833169
Merged-chr1-131090395-4	chr1	131090293	131090493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	7450.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	6.54643019976163	6.56622484946696	6.07409883854633	6.52960327399669	6.35152665162709	6.46210997488321	6.7689653797567	6.26108791780888	0.0316735224564674	0.896090840920388	0.960994089571403
Merged-chr11-67021162-4	chr11	67021069	67021269	+	833.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3985.0	NM_001291042	338369.0	Mm.128138	NM_177392	ENSMUSG00000050270	Tmem220	-	transmembrane protein 220	protein-coding	3.69431736936761	3.90033744236866	3.51746176268784	3.56280999496172	3.99026242698819	3.6969766192606	4.05624752914234	3.94317220576833	0.751456509492158	0.103358891878683	0.353254142575597
Merged-chr15-50763544-3	chr15	50763433	50763633	+	917.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	125516.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	3.45492012585018	3.52461453861629	3.85143964491488	3.69326827650527	3.30413320749974	3.31288388291714	3.74662099869454	3.39433793679929	-0.628522383561195	0.23237468639621	0.541946192758711
Merged-chr7-143548319-4	chr7	143548207	143548407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285489, intron 1 of 14)	intron (NM_001285489, intron 1 of 14)	521.0	NM_001285490	17955.0	Mm.294625	NM_008672	ENSMUSG00000059119	Nap1l4	2810410H14Rik|AI316776|D7Wsu30e|Nap2	nucleosome assembly protein 1-like 4	protein-coding	6.11860356759989	6.17723093647928	5.73136424291882	5.6517782816387	5.68646003070077	5.85604948833789	5.70227945291206	5.41420432748702	-0.420613452492279	0.13831479618686	0.413742830038649
Merged-chr12-100439460-7	chr12	100439347	100439547	+	987.0476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	ORR1E|LTR|ERVL-MaLR	81375.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	4.73793681541596	4.52865638940745	4.28347354022657	4.78908958046417	4.35979602831332	3.97944480644824	4.07190864913852	4.36966230778238	-0.951787098418576	0.0221454667747251	0.137104651609825
Merged-chr3-105001571-4	chr3	105001462	105001662	+	962.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163332)	TTS (NM_001163332)	-39853.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	5.29167183826036	4.59035412503892	5.34598207465438	5.36520685609012	4.82378760413787	4.80720335021337	4.88972733459139	4.90995901093542	-0.647388087093614	0.0673055016147566	0.276809285227755
Merged-chr3-67583341-2	chr3	67583233	67583433	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025813, intron 1 of 15)	intron (NM_025813, intron 1 of 15)	565.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	3.84515403724866	4.33874429717592	4.36719631353855	3.82396462649049	3.93246578532184	4.57382676865078	3.77206433317644	4.24175295859621	0.120666379853661	0.804008896233709	0.924493051202757
Merged-chr17-32617437-3	chr17	32617337	32617537	+	837.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MuLV-int|LTR|ERV1	-3882.0	NM_001100187	677156.0	Mm.484117	NM_001100187	ENSMUSG00000062464	Cyp4f37	Gm9705	cytochrome P450, family 4, subfamily f, polypeptide 37	protein-coding	3.70381914211617	3.42412279175146	3.43477204594263	3.64967870429414	3.58629981720484	3.82117407983934	3.63975549961418	3.43309394179976	0.195035996464978	0.692988013273735	0.875210361913583
Merged-chr12-70227003-4	chr12	70226946	70227146	+	924.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045174)	promoter-TSS (NR_045174)	637.0	NM_133198	110095.0	Mm.256926	NM_133198	ENSMUSG00000021069	Pygl	-	liver glycogen phosphorylase	protein-coding	4.0866159039978	4.23235473992761	4.4636679408085	4.09481973400655	3.95935454153377	4.10975871597475	3.96985656594747	4.30726262472738	-0.336805875651726	0.423307718283973	0.715220118828193
Merged-chr4-9841335-2	chr4	9841235	9841435	+	874.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3037.0	NM_013526	242316.0	Mm.302555	NM_013526	ENSMUSG00000051279	Gdf6	BMP-13|BMP13|GDF16	growth differentiation factor 6	protein-coding	2.93421372599451	2.78212401710196	2.86650325608891	2.5655814315107	3.58687476101798	3.1122526133169	3.04928457158488	3.1748414919576	2.02877525873523	0.00119863998641821	0.0155604587986981
Merged-chr11-75348423-4	chr11	75348332	75348532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102611)	promoter-TSS (NM_001102611)	-1.0	NM_001102611	319822.0	Mm.340377	NM_177009	ENSMUSG00000018809	Smyd4	G430029E23Rik	SET and MYND domain containing 4	protein-coding	7.80790898233483	7.95689146736887	7.68833560873517	7.84562936271726	7.91247426942845	8.04638239058016	7.74821660220862	7.86402263889797	0.0850469822439089	0.613130674375331	0.833119630742334
Merged-chr3-89843333-4	chr3	89843239	89843439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172530, intron 2 of 5)	intron (NM_172530, intron 2 of 5)	11969.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	6.84979096827171	6.83163895167009	7.00606243170805	7.16158443615221	6.61191154906913	6.64704100225129	6.82983882114118	7.19219451761587	-0.196355235789579	0.384052913290186	0.685644380524807
Merged-chr15-28182103-4	chr15	28181986	28182186	+	888.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21680.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	4.50529548009178	4.70279395131463	4.32621070158023	4.86209230780819	4.27536334549484	4.40611853308359	4.35436602882015	4.92637461841426	-0.253678551674908	0.533265366048338	0.78857554929893
Merged-chr2-155382185-4	chr2	155382098	155382298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178111, intron 1 of 3)	CpG	342.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	7.46513883330487	7.54960785341886	6.84816002993214	7.25898259086769	7.43745065076161	7.33171634580827	7.27320582942644	7.47952385122287	0.101714766718818	0.628957941768887	0.841850103289223
Merged-chr15-75929451-2	chr15	75929351	75929551	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357005, intron 1 of 10)	intron (NM_001357005, intron 1 of 10)	279.0	NM_031201	22122.0	Mm.22596	NM_031201	ENSMUSG00000022570	Tsta3	AI256181|FX|Tstap35b	tissue specific transplantation antigen P35B	protein-coding	3.05521750573797	3.03757066931213	3.05564115649573	2.73961257080234	2.91604242953141	2.98310287157693	2.65841182528685	2.99645528564783	-0.333234108845446	0.598054524343349	0.825700950899405
Merged-chr6-58999151-4	chr6	58999046	58999246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153574, intron 2 of 17)	intron (NM_153574, intron 2 of 17)	25356.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	7.39935278997433	6.86200722222798	7.45568394639264	7.67128265642239	6.9169163229348	6.91430030117218	7.10488784649417	6.90862296603449	-0.579536705427672	0.0107631398281239	0.083299938004353
Merged-chr11-29546366-4	chr11	29546258	29546458	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133767)	TTS (NM_133767)	-1592.0	NM_028504	73324.0	Mm.69388	NM_028504	ENSMUSG00000020461	Clhc1	1700034F02Rik	clathrin heavy chain linker domain containing 1	protein-coding	5.1063140879678	5.0718576039029	5.61451907655752	4.94987619377601	5.20388882833999	5.07025903432666	4.90758152992436	4.96491703105711	-0.28421517461292	0.399349249788553	0.697398862845002
Merged-chr5-34543319-4	chr5	34543231	34543431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145858)	promoter-TSS (NM_001145858)	-34.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	6.79010957483111	6.92357851051076	7.09337451991222	6.94055572070367	6.5268729147356	6.68293402556194	6.91626795322167	6.78647828359915	-0.299043685415449	0.147741757298339	0.429084894063698
Merged-chr3-90466692-4	chr3	90466595	90466795	+	733.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008727)	promoter-TSS (NM_008727)	-829.0	NM_008727	18160.0	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	3.97680061598059	3.85969384205668	3.46559454900334	3.87261812967731	4.03992258720421	4.14711572171171	4.04990652657124	3.87732135566892	0.602678066899822	0.184557208047316	0.482094664450069
Merged-chr15-66856747-4	chr15	66856650	66856850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24921.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	6.33236078239957	5.79819047808461	6.56794859960275	6.34874682466819	5.86740157765383	5.79180141606569	6.13653480379654	6.08274963594094	-0.485235698441323	0.0714545852659725	0.286926882807552
Merged-chr14-105177369-4	chr14	105177258	105177458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134077)	promoter-TSS (NM_134077)	-31.0	NM_134077	74213.0	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	7.53715611599275	7.90144087523262	7.42178616629718	7.64712860995656	7.88902779433651	7.83945557318783	7.92158993253296	7.31046244118126	0.16101262388836	0.441285093563488	0.728396857622944
Merged-chr5-104074524-3	chr5	104074424	104074624	+	691.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163772, intron 4 of 9)	intron (NM_001163772, intron 4 of 9)	3084.0	NM_001163772	100271704.0	Mm.366664	NM_001163772	ENSMUSG00000091034	Gm17660	Scpppq1	predicted gene, 17660	protein-coding	3.05218426331113	3.2013084987999	2.93586655383733	2.96551458461324	2.77331826824346	2.77038795121986	2.73096602131197	2.99398361147359	-1.00079431194456	0.111356645112105	0.368698618619051
Merged-chr9-54507785-4	chr9	54507673	54507873	+	995.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-6147.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	5.13530393056795	5.01920702607815	5.26128410606538	4.77031085360759	5.25807613344974	5.3425411871837	5.17456405249428	5.39818330339393	0.481926298315863	0.120488650585069	0.384265951913617
Merged-chr8-119798345-4	chr8	119798250	119798450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19934.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	6.45390914519674	6.52109674291212	6.02020894862295	6.2781003478714	6.91991551726592	6.92629364851172	6.67419294617792	6.74595210254705	0.710599622070492	0.00136148772948533	0.0172928863485076
Merged-chr9-57131253-4	chr9	57131151	57131351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102289)	promoter-TSS (NR_102289)	39.0	NR_102289	76794.0	Mm.472839	NR_102289	ENSMUSG00000086728	Man2c1os	2410133F24Rik|AI851351	mannosidase, alpha, class 2C, member 1, opposite strand	ncRNA	6.37871833458554	6.50782758095393	6.28664246818995	6.40311869434393	6.78009348504307	6.50091337976651	6.5609644468294	6.16156809621301	0.194814254702857	0.404261175731687	0.701398832235717
Merged-chr15-77841408-4	chr15	77841304	77841504	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	CpG	771.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	4.78803072169785	4.42982121724317	4.62595131518047	4.56537968955195	5.00502015767557	5.32210432770824	4.8749466571765	5.09011413799254	0.964915245290049	0.00394366674611727	0.0396142048153939
Merged-chr3-68708395-4	chr3	68708270	68708470	+	989.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16946.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	4.93548133513294	5.42334218744936	5.01615072693724	5.07335522426606	5.73602369734205	5.97411674661897	5.32883783364734	5.46599851746043	0.919118990174033	0.00338344535422728	0.035081189174652
Merged-chr2-160269518-4	chr2	160269405	160269605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57989.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	5.61752844785438	5.37907692764017	5.92339564890722	6.42081813307584	5.32765328272918	5.32600180277158	5.64160223319941	5.53244074362058	-0.756876760546724	0.023589310831093	0.142680451703464
Merged-chr4-19892360-4	chr4	19892254	19892454	+	948.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	30212.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	5.39205627847251	4.64355028238134	4.65882601235347	5.25610435001366	4.58785753770585	4.75019588316387	5.0379339586295	4.85516185868949	-0.448662312737201	0.238514848225961	0.548910355390594
Merged-chr3-121637966-4	chr3	121637863	121638063	+	782.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036458, intron 2 of 2)	intron (NR_036458, intron 2 of 2)	5522.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	4.30429368084581	4.08697903923088	4.54252059146949	4.23749503696296	4.23208913412392	4.47623284578648	4.19641534574952	4.16465944087989	-0.0632908663124243	0.874192710936833	0.952832392676241
Merged-chr13-9249876-4	chr13	9249781	9249981	+	938.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-26644.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	5.0139451314922	5.04878231347461	5.74201132644876	5.62392732245252	4.48367001084241	4.92397882093743	4.80318465585081	4.86279050296974	-1.22772400877332	0.000726982712689934	0.0104389555187728
Merged-chr14-15065366-4	chr14	15065258	15065458	+	955.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	244543.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	4.72657327348808	4.41025550997452	5.06946457365775	4.75266405297587	5.12634208241748	5.0474693937518	4.58290371872763	4.64334241337294	0.250583225854351	0.504038282829923	0.770626277304553
Merged-chr17-6827368-4	chr17	6827270	6827470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44590.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	6.33877900043651	6.94058870759832	6.47050395650028	6.36815220627655	7.10027642546609	6.82837409445026	6.78907932541925	6.51794479852097	0.401901741232528	0.104446389439084	0.355389337630124
Merged-chr7-97018165-4	chr7	97018071	97018271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153591, intron 6 of 13)	intron (NM_153591, intron 6 of 13)	-63580.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	5.65991668752401	5.42177324929209	5.76834528938822	5.72518594025874	6.32698397152472	6.02035671576715	6.29019382336212	6.38283746874086	0.963832475408954	0.000105756223222527	0.00212885243573424
Merged-chr16-32972686-4	chr16	32972595	32972795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081255, intron 6 of 20)	intron (NM_001081255, intron 6 of 20)	58595.0	NM_001310672	70144.0	Mm.491178	NM_001081255	ENSMUSG00000022801	Lrch3	2210409B11Rik|AW215594|Gm1742	leucine-rich repeats and calponin homology (CH) domain containing 3	protein-coding	6.75708505905898	6.51361927115988	6.33003822913896	6.97025073561185	6.30588068849358	5.89464786696231	6.35274920469575	6.59631084211478	-0.53390517261603	0.0416712883653586	0.20671270712648
Merged-chr1-161443883-4	chr1	161443752	161443952	+	952.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48414.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	5.1835267177924	5.13943329504572	5.54653486290809	5.95348237958112	4.74076446452271	5.15374449742714	5.09308169384996	4.81052400617387	-1.04321508122124	0.00343566290224136	0.0354981927302421
Merged-chr11-98589009-2	chr11	98588909	98589109	+	995.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Plat_L3|LINE|CR1	-1764.0	NM_025661	66612.0	Mm.180546	NM_025661	ENSMUSG00000038150	Ormdl3	2810011N17Rik|AI315223	ORM1-like 3 (S. cerevisiae)	protein-coding	3.05303828952205	3.23521171985674	3.05341139777633	2.90188288735869	3.26050433115287	3.03341136441192	2.91665801256498	3.16808026591881	0.186971354054711	0.74933154094688	0.901261739659649
Merged-chr9-86592858-4	chr9	86592766	86592966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008615, intron 12 of 13)	intron (NM_008615, intron 12 of 13)	20813.0	NM_027100	69519.0	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	6.67828573617999	6.58637034173159	6.46293625890784	6.97835989635187	6.38974164877871	5.91352320905442	6.34285879536424	6.13296118492434	-0.717289153357725	0.00362757353337987	0.037086634549324
Merged-chr2-27692864-4	chr2	27692772	27692972	+	820.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	15671.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	3.79069735251548	3.64784666174512	3.97849940489723	3.64560914708398	3.86568310717543	3.91060528011384	3.72461980630598	3.68386975773401	0.115523222674306	0.801385738891729	0.923365533732052
Merged-chr6-71273898-3	chr6	71273808	71274008	+	891.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145568, intron 1 of 3)	intron (NM_145568, intron 1 of 3)	1889.0	NM_145568	57896.0	Mm.250569	NM_145568	ENSMUSG00000053012	Krcc1	AA792894	lysine-rich coiled-coil 1	protein-coding	3.65453117766274	4.30983970526334	3.26010191027532	3.22598108380627	3.87038075251273	4.21770052657113	3.79993236512311	3.59454304677155	0.53244966823468	0.377421668504571	0.680062196351843
Merged-chr3-59211922-4	chr3	59211823	59212023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	-1041.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	7.52215022568457	7.70690436319949	7.57467945978889	7.47549657197372	7.32886739198924	7.12518438515858	6.89775951334885	6.55821430318782	-0.745418801163374	0.00075656829983196	0.0107660485833145
Merged-chr3-90052658-4	chr3	90052590	90052790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165984)	promoter-TSS (NM_001165984)	-112.0	NM_001287086	99650.0	Mm.300083	NM_025762	ENSMUSG00000027942	4933434E20Rik	5730552F22Rik|AI462154|NICE-3|NS5ATP4	RIKEN cDNA 4933434E20 gene	protein-coding	8.00007548637778	8.10564678791969	7.96692701593232	7.55604930503318	8.18031761528563	8.35625167608887	8.07956013037241	8.00282465559234	0.317342085652104	0.0970058172958235	0.341195684602432
Merged-chr13-34130497-4	chr13	34130384	34130584	+	804.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023716)	promoter-TSS (NM_023716)	-130.0	NM_023716	73710.0	Mm.379227	NM_023716	ENSMUSG00000045136	Tubb2b	2410129E14Rik|brdp	tubulin, beta 2B class IIB	protein-coding	4.0902830067139	4.37674585115557	4.30641979197763	4.40175262333408	3.86344510704423	4.01022000154465	3.97673715130401	3.64678502016682	-1.14335701561462	0.00875554312477843	0.0717103130839838
Merged-chr4-133546052-4	chr4	133545923	133546123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010948)	promoter-TSS (NM_010948)	4.0	NM_010948	18221.0	Mm.69	NM_010948	ENSMUSG00000028851	Nudc	SIG-92|Silg92	nudC nuclear distribution protein	protein-coding	7.28749537181611	7.50501933330279	7.28875084036347	7.20507163904624	7.46921288706533	7.59852249883876	7.58919015441442	7.34667756102569	0.242211672655101	0.183609917565584	0.480713956023125
Merged-chr11-121748510-4	chr11	121748393	121748593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46066.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	5.52350177085898	5.69107345126766	5.02130174668143	5.47752677314503	5.16026574629651	5.53242872786451	5.17527895888647	5.41226703139004	-0.23794150911612	0.443164334124583	0.729779110682633
Merged-chr16-87689037-4	chr16	87688934	87689134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9920.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	6.37725467680985	6.04092079341413	6.4811393132263	6.01475751616873	6.49188674732233	6.68885885443191	6.55751829076918	6.47649775710233	0.485986811476257	0.0375222245267309	0.193457999896038
Merged-chr9-16381227-1	chr9	16381127	16381327	+	555.0	f0_balb.idr	Intergenic	Intergenic	-2996.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	2.85110613090103	2.84786426730819	3.45261796234768	3.39229466901496	2.94403890862574	3.17367751759117	3.17389972959919	3.54281893556364	0.210798378365925	0.750924537253753	0.901912789382665
Merged-chr14-61789213-4	chr14	61789097	61789297	+	905.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106824.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	3.93038284208577	4.73100938457464	4.43583058583646	4.0930938260309	5.81413477898618	5.71581473134288	5.4896002545954	5.49097484015498	2.55756707833411	3.69267530287199e-12	3.58582449363063e-10
Merged-chr19-61084259-4	chr19	61084164	61084364	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 12 of 15)	intron (NM_018869, intron 12 of 15)	56576.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	4.80880913582937	5.01920154075441	5.11999539726209	5.09949612450978	4.49360859371455	4.94653742975275	4.89803122955063	5.20487713465934	-0.243247593017692	0.486670083593033	0.760331208956728
Merged-chr1-80660626-4	chr1	80660536	80660736	+	804.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	4716.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	4.06774687100541	3.99298207645631	4.01886506682857	4.4890788145314	4.12018994452632	3.65774059427832	4.31045832917639	4.32785261584642	-0.105640344985232	0.823049314226818	0.932185203682946
Merged-chr2-153319419-4	chr2	153319302	153319502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008444, intron 2 of 8)	intron (NM_008444, intron 2 of 8)	26408.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	6.78035079743327	6.59947237866705	6.58772991530893	6.62333654677789	6.44844444566453	6.53663859465184	6.71922369006274	7.02609110845045	0.0698365232700588	0.75600027625714	0.904103625123187
Merged-chr10-95298027-4	chr10	95297916	95298116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	25693.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	6.79476935081187	6.50205199470065	6.76807890935265	6.77610121525866	6.7687065691539	6.73019284654954	6.69083521100046	6.66054230768244	-0.00248318864300915	0.990232537610113	0.996152324385859
Merged-chr9-32591897-4	chr9	32591791	32591991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50439.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	5.73181566395969	5.71495124676898	5.54678902808819	6.05878361168105	5.88634579964577	5.72328119965022	5.70380061671173	5.5140084742997	-0.125681866686731	0.651056853676119	0.853687565172288
Merged-chr2-75763469-4	chr2	75763352	75763552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58789.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	7.3132670020891	7.88666846203179	7.487274469214	6.94573907503498	8.41959043492096	8.56846376052046	8.52845249333041	8.16517666091303	1.26821070955346	2.77297302410125e-08	1.34544953566805e-06
Merged-chr3-96160381-4	chr3	96160286	96160486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001025614, exon 12 of 12)	3' UTR (NM_001025614, exon 12 of 12)	-1584.0	NM_181409	194126.0	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	6.28326627050131	6.48822531700899	6.03824464611208	6.43255233765027	6.12065494675802	6.25964970067989	6.25222727786224	6.35225217097044	-0.135635805819883	0.561122926522211	0.804849597634179
Merged-chr3-51182711-4	chr3	51182622	51182822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41725.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	5.49142018862449	5.66115402894765	5.52203308397644	5.96483550643971	5.91078271190882	5.40911046937679	6.05057488496544	5.95926570523132	0.269737599050244	0.356086972644421	0.662704502355483
Merged-chr12-69446623-6	chr12	69446532	69446732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28918.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	6.41078472128782	6.76058628086154	6.95481228548627	6.85232298688515	5.93807519375463	5.97925236627693	5.8746083555675	6.31706857665527	-1.08681621184639	8.33329209394089e-06	0.000234078689011294
Merged-chr5-65335712-4	chr5	65335629	65335829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347358)	promoter-TSS (NM_001347358)	-90.0	NM_001347358	19687.0	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	6.79921970753838	6.54108636815257	6.14299669986428	6.79856259880407	6.38034557950643	6.57877409883213	6.42206638964814	6.45047242617194	-0.221739404806547	0.354368072937742	0.661081511299582
Merged-chr17-31005073-4	chr17	31004981	31005181	+	962.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177465, intron 20 of 21)	intron (NM_177465, intron 20 of 21)	50398.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	4.89991930848286	4.61357758638941	4.93809352623634	4.88737012496222	5.47996644729846	5.00080067742048	5.17729518752519	5.41829055464427	0.856969451000168	0.00748667632018514	0.0640189973323472
Merged-chr14-75761294-3	chr14	75761178	75761378	+	768.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026232)	TTS (NM_026232)	-6785.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	3.02473606769453	3.31548007062519	3.2239451552491	3.04699475775354	3.36766656688454	3.56643878381016	3.32863322410262	3.54726327323932	1.08843017358676	0.0409576846314802	0.204656178566774
Merged-chr3-94933023-4	chr3	94932954	94933154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009150)	promoter-TSS (NM_009150)	-29.0	NM_009150	20341.0	Mm.196558	NM_009150	ENSMUSG00000068874	Selenbp1	Lp56|Lpsb|MTO|SBP56	selenium binding protein 1	protein-coding	5.68840299843493	5.64223216539963	5.75798464093505	5.45243868616712	5.16266141029448	5.16714647489976	5.37297981184824	5.48181597741654	-0.579166812922723	0.0431116885187913	0.211266566408196
Merged-chr11-50236757-4	chr11	50236665	50236865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132732, intron 4 of 4)	CpG	1767.0	NM_001313968	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	8.20196632285253	8.2392062101137	8.41611798330884	8.0726644743638	8.13255009478791	8.22223709314771	8.34158010876179	8.1368811357347	-0.028867837621045	0.860233988686147	0.947128143348069
Merged-chr17-31071073-4	chr17	31070987	31071187	+	988.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	13393.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	5.35121043314991	4.94705897335367	5.24330074849309	5.04740653018535	5.16151336731346	4.57201358370591	4.8973414638826	4.91754072728798	-0.446525213354469	0.191028522981962	0.490378651086737
Merged-chr10-8683174-4	chr10	8683070	8683270	+	925.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164345.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	4.43999079236561	4.0255760916581	3.83468163411643	4.33037537474259	4.32342434253879	3.95625021220276	4.26340273861404	4.23743207808018	0.0520095286578448	0.904978057270602	0.964695555007872
Merged-chr8-35557024-4	chr8	35556929	35557129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30769.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	5.78117797089561	5.61685850172272	6.13375849137994	5.68485198010997	5.36205350825184	5.83266016045183	5.5471002525198	5.93486741416911	-0.218316806435807	0.453023398867783	0.737231132582133
Merged-chr1-165609784-3	chr1	165609707	165609907	+	887.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	B1_Mm|SINE|Alu	24734.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	3.03813108266285	3.12307720018728	3.56867372259493	3.00916339939917	2.76598747570377	2.72873564111238	2.83664598067739	2.77353078043129	-1.92803427013833	0.00452049362230065	0.0440835655610496
Merged-chr1-174043882-4	chr1	174043779	174043979	+	922.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_146717)	TTS (NM_146717)	1946.0	NM_146717	258712.0	Mm.223146	NM_146717	ENSMUSG00000045381	Olfr433	MOR123-1	olfactory receptor 433	protein-coding	4.29365174898419	4.70870703504819	4.65858629353472	4.1237825982807	4.53321784398213	4.37500578693807	4.56430634313917	4.03465456752222	-0.144894573646646	0.732159452129003	0.893930797678999
Merged-chr7-123293192-4	chr7	123293093	123293293	+	861.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122641, intron 16 of 18)	intron (NM_001122641, intron 16 of 18)	76722.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	3.92093861928384	3.93991437585888	4.11227883982896	3.76270123808335	3.60583748334211	4.28249748386756	4.25761604789102	3.91920391784946	0.285042642672012	0.544322502500609	0.795184841840149
Merged-chr13-13950827-4	chr13	13950815	13951015	+	846.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3759.0	NM_001362404	97884.0	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	3.63830171691594	3.08703803281697	3.58972763155587	3.1532292144856	3.25966960767943	3.48829723538922	3.62256969300733	3.53652024876716	0.336929441376842	0.545754251998657	0.795980613958413
Merged-chr6-135237523-3	chr6	135237445	135237645	+	882.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010352, exon 7 of 7)	exon (NM_010352, exon 7 of 7)	10339.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	3.56803812522538	3.33456777756829	3.27156739649213	3.47254073410403	3.01217418874184	2.9929623869533	3.14353754598352	2.88381879124988	-1.65109120766384	0.00577781067976452	0.052849392774437
Merged-chr3-116129343-5	chr3	116129132	116129332	+	998.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 1 of 8)	intron (NM_011693, intron 1 of 8)	456.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	4.83043612781456	5.18517173521752	4.97963916712123	4.44692345163756	5.48780286250128	5.31635919181599	4.68594229999116	5.01077917359462	0.556527072933995	0.143371538365198	0.421642852619491
Merged-chr13-20140239-4	chr13	20140150	20140350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	49743.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	6.1208063886512	6.40550151359484	5.81663337842804	5.98246857566364	6.36761445235567	6.52524337194516	6.48004905766828	5.98570623855525	0.390600267546851	0.130958536415522	0.402847904555962
Merged-chr4-63400072-6	chr4	63399940	63400140	+	884.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 1 of 21)	intron (NM_001045514, intron 1 of 21)	-1800.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	3.9075574068725	3.84576922484624	4.09668518936644	3.88141047596818	4.10977509606692	4.22121325625764	3.61353820802453	3.95557495381826	0.176784495563375	0.69589389764534	0.876953947481157
Merged-chr7-128019397-1	chr7	128019297	128019497	+	632.0	f0_balb.idr	Intergenic	Lx8|LINE|L1	15019.0	NM_001079932	434246.0	Mm.389924	NM_001079932	ENSMUSG00000042828	Trim72	BC067209|MG53	tripartite motif-containing 72	protein-coding	3.37178790854751	2.9338097805966	3.207900595583	3.27207959996464	3.00586988095713	3.19607234169935	3.25224962242178	3.37028453010151	0.00490327817067346	0.993174738138661	0.997589533274607
Merged-chr8-77116904-4	chr8	77116802	77117002	+	956.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083906, intron 3 of 8)	intron (NM_001083906, intron 3 of 8)	214394.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	4.47080072625231	4.32797824806392	4.21481462947618	4.70381385056181	5.15955554526317	5.14156793255257	4.58355370538855	5.17171311519866	1.18480758261081	0.00222593442563548	0.0253984372428227
Merged-chr16-58502091-4	chr16	58502003	58502203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	intron (NM_001357433, intron 2 of 10)	21323.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	8.48464464455918	8.13928700201027	8.8344569266966	8.66663435539451	8.0619219678781	8.00256263404764	8.43207964090426	8.06486157872328	-0.514041042787629	0.0107235912896405	0.0831294385107079
Merged-chr4-99368261-4	chr4	99368166	99368366	+	934.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	174119.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	4.70182163575997	4.66606360804441	5.10862074489123	5.5590438657387	5.3372143988787	5.06272154281289	5.70231160630454	5.90636005254395	0.816566393584218	0.0394989867126842	0.200165115022177
Merged-chr16-30790233-4	chr16	30790137	30790337	+	959.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	190514.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	4.92387888229905	5.07631623288844	5.69252953980188	5.37009304665299	4.83873726009471	5.2138381147325	5.5528376791084	4.755691028992	-0.319579169875195	0.390028556571379	0.690245822100553
Merged-chr7-46922133-2	chr7	46922033	46922233	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-2164.0	NM_021884	22088.0	Mm.241334	NM_021884	ENSMUSG00000014402	Tsg101	AI255943|CC2	tumor susceptibility gene 101	protein-coding	3.12316497034068	3.32249548723095	3.17991632935832	2.91477474742041	3.29371307599839	2.97596790411843	3.05383878029916	2.86989347553419	-0.290877503631756	0.634434030134714	0.845140265958468
Merged-chr13-41017173-4	chr13	41017041	41017241	+	856.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_025387, exon 2 of 6)	5' UTR (NM_025387, exon 2 of 6)	891.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	3.94983498595749	3.79634026383956	4.17323925304377	3.94637163612315	3.80964032995755	3.79960707688546	4.07040497742349	3.99580928835565	-0.132960202001281	0.762167248780739	0.906831749815529
Merged-chr1-181256443-4	chr1	181256370	181256570	+	954.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44492.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	4.26142918519114	4.53952044178897	4.47587207017278	4.31679032468942	4.20292373235714	4.13049885034406	4.45504014063158	4.4729590777109	-0.186160220594288	0.632026323160293	0.84364113460172
Merged-chr2-181581180-4	chr2	181581099	181581299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164597)	TTS (NM_001164597)	774.0	NM_026765	68556.0	Mm.232400	NM_026765	ENSMUSG00000089917	Uckl1	1110007H10Rik|Urkl1	uridine-cytidine kinase 1-like 1	protein-coding	6.53115660469666	6.77586333206831	6.20461395213774	6.72140644512011	6.78425118396647	7.02222299047818	6.56480384094542	6.99100400052164	0.372183197983606	0.112198827452643	0.370214573860373
Merged-chr13-22043101-4	chr13	22042994	22043194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178198)	promoter-TSS (NM_178198)	-136.0	NM_178198	319183.0	Mm.371766	NM_178198	ENSMUSG00000069300	Hist1h2bj	-	histone cluster 1, H2bj	protein-coding	7.79627208282727	8.09948346293642	7.80530578796568	7.80870650879786	7.84862517359413	7.67940416236418	7.81273884475159	7.88916758690399	-0.09303691199102	0.587082487265081	0.819066315706721
Merged-chr17-21517058-4	chr17	21517112	21517312	+	985.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18327.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	3.61414191432394	3.38118630865922	3.98391265376369	3.40847744653583	3.5965858795253	3.67762842396937	3.59998161554119	3.55797848704881	-0.00273292437584543	0.995729357593316	0.998475782469397
Merged-chr1-131976763-4	chr1	131976679	131976879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145977, exon 2 of 5)	5' UTR (NM_145977, exon 2 of 5)	6170.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	7.50842606693558	7.42703103837137	7.6760962729345	8.07326226475447	7.38039683501605	7.45126969598668	7.69450368682222	7.63762776472072	-0.216711367804646	0.307688291434938	0.620054497212634
Merged-chr12-3868273-4	chr12	3868198	3868398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-6054.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	6.96690968546956	7.00995602232484	7.17878785260929	7.20097554974927	7.06375934040998	6.77893548451529	6.68059980797179	6.91117763683324	-0.309012535176974	0.126984301293918	0.396427872328494
Merged-chr4-148656176-4	chr4	148656079	148656279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085505, intron 3 of 10)	intron (NM_001085505, intron 3 of 10)	12862.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	6.0298248246061	6.34971956936681	6.37971815136901	5.51481475853608	6.55838500597981	6.85686886170342	6.85381294730773	6.61891692454096	0.931203235072356	0.000704755263457321	0.0101772722454106
Merged-chr5-120570428-4	chr5	120570343	120570543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145853, intron 2 of 27)	intron (NM_145853, intron 2 of 27)	18170.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	7.58415645438785	7.30352459948523	7.31072872850637	7.74387760705883	7.16849868240934	7.40045563224073	7.3055840808023	7.4922011229194	-0.224055847435541	0.262102417547795	0.574100843086496
Merged-chr4-45494220-3	chr4	45494127	45494327	+	776.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	36601.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	3.83931556007645	3.55634309828452	3.65118803665042	3.84617103787849	3.33511534508494	3.34748265676099	3.47563152059125	3.59721949421843	-0.97086362995823	0.0547054162617124	0.244283364121231
Merged-chr2-35211725-7	chr2	35211622	35211822	+	878.496582	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-10602.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	3.39886563666582	3.21817915404274	3.67958635606465	3.07442462600926	2.90216619813065	3.15246901197614	3.33202531373339	3.10560151228056	-0.86237043676201	0.153288487536911	0.437855502002078
Merged-chr9-110672661-3	chr9	110672555	110672755	+	878.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	16152.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	3.9586835307824	3.84122849202331	3.95928332810624	3.45575177783109	3.85397102091613	3.92986814259594	4.15727111477689	3.90850813254537	0.458246540268705	0.327746765080673	0.639159620583501
Merged-chr1-182512012-4	chr1	182511916	182512116	+	976.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009794, intron 2 of 20)	intron (NM_009794, intron 2 of 20)	5594.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	4.76311181768099	4.7982422192456	4.8699426876381	4.540895051348	4.57279394430991	4.69749057490619	4.7412808515696	4.7970295110281	-0.0741460303691517	0.829966202772238	0.934690278259685
Merged-chr1-23383365-4	chr1	23383264	23383464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081079)	promoter-TSS (NM_001081079)	-189.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	8.83052466589224	8.88626572891863	9.087047059915	9.23813218264494	8.98125472332932	8.85463297433999	9.2610449829678	8.88943134125872	-0.0221953588215228	0.897641664782128	0.961755066043397
Merged-chr11-83639853-4	chr11	83639750	83639950	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9528.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	3.73982345436555	3.84280610213209	3.79087076950258	3.34049903478647	3.91395283469214	4.00874211024395	3.50345424244281	3.51442803636369	0.21840973936194	0.672070521808271	0.865019487031047
Merged-chr2-158258158-4	chr2	158258067	158258267	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177850)	promoter-TSS (NM_177850)	-74.0	NM_177850	329547.0	Mm.260883	NM_177850	ENSMUSG00000052922	Bpi	9230105K17Rik|Bpifd1	bactericidal permeablility increasing protein	protein-coding	4.37352378246942	4.81695052600889	4.8127676438766	4.31804477732359	4.97768089334205	4.91207268719049	4.96199029722427	5.32236175882655	0.94980875336252	0.00820250815764312	0.068294107866754
Merged-chr2-158167855-4	chr2	158167764	158167964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21472.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	7.08365435332258	6.56503208581714	7.90882267261899	7.4538594223635	6.99203148256595	6.62134313922278	7.16354590688505	7.19471174745448	-0.453103268968809	0.122948129514254	0.388688648043308
Merged-chr9-15045420-6	chr9	15045268	15045468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019482, exon 1 of 5)	5' UTR (NM_019482, exon 1 of 5)	110.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	6.15055333067483	6.08660380925219	6.64573366940148	6.29239566424936	6.13663117505744	6.10926732287596	5.94828448416253	6.0638066812921	-0.367111715041302	0.136563022118599	0.411042630338623
Merged-chr13-49200822-4	chr13	49200730	49200930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13283.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	8.58287498598309	8.93141746646654	8.85505069183713	8.63949326529167	8.54237715851327	8.84426267709332	8.60026695035017	8.68725106219532	-0.110576441698518	0.499270937964363	0.768247786185425
Merged-chr1-74775933-4	chr1	74775830	74776030	+	949.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009526, intron 1 of 3)	intron (NM_009526, intron 1 of 3)	4038.0	NM_009526	22420.0	Mm.268282	NM_009526	ENSMUSG00000033227	Wnt6	AA409270|Wnt-6	wingless-type MMTV integration site family, member 6	protein-coding	4.66341574219457	5.6587956306644	4.75151268514219	4.29354106531113	5.62082716693747	4.93298987297015	5.29642048874927	4.78994386649138	0.46812324036002	0.300930428520412	0.612820844323931
Merged-chr15-58592888-4	chr15	58592801	58593001	+	848.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	177433.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	3.78338706569158	4.24201627117909	3.78388411833396	3.83982806766864	4.10055664838901	3.84550520126641	4.2782172151067	4.21654240998635	0.515718546795382	0.247611191839217	0.558805232210642
Merged-chr8-105264649-4	chr8	105264549	105264749	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015821)	promoter-TSS (NM_015821)	1.0	NM_015821	50788.0	Mm.334764	NM_015821	ENSMUSG00000033313	Fbxl8	FBL8	F-box and leucine-rich repeat protein 8	protein-coding	5.35349138181399	5.38433503582606	5.19315036128897	5.50520255592622	5.42201420767559	5.46847536689259	5.93504828344517	5.18961688688444	0.27535387122331	0.371238851792117	0.675280729644299
Merged-chr13-67378258-1	chr13	67378158	67378358	+	628.0	f1_c57bl6.idr	Intergenic	RLTR13B3|LTR|ERVK	-2495.0	NM_001001186	408065.0	Mm.461583	NM_001001186	ENSMUSG00000078995	Zfp456	BC065418|Rslcan-13	zinc finger protein 456	protein-coding	2.21967222629133	2.17550631039315	2.30421029998944	1.95006166991578	3.12903823738507	2.71294705000725	2.82922369809173	2.72521882028399	6.13551431728018	1.57183179106325e-09	9.74576786202886e-08
Merged-chr5-147896698-2	chr5	147896613	147896813	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1898.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	3.27038869328006	2.99519777342942	2.89793771736694	2.88826651612319	3.19176060283934	3.20927303972327	3.30957312936553	3.32181991369469	0.962735323600447	0.0880169771552278	0.32365269415091
Merged-chr4-52439029-4	chr4	52438968	52439168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301412)	promoter-TSS (NM_001301412)	-104.0	NR_045175	72648.0	Mm.391869	NR_045175	ENSMUSG00000085763	Smc2os	2700081L22Rik	structural maintenance of chromosomes 2, opposite strand	ncRNA	7.2768990825342	7.35318446105664	7.66489364337531	7.33968243504125	7.05886970816861	7.27433235768366	6.96018321776	7.09196034174176	-0.427274055892998	0.0276893140245719	0.15881528468614
Merged-chr14-77806550-3	chr14	77806477	77806677	+	844.650024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-7609.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	3.24576017654838	3.02728784906	3.37462626948008	3.55267037860868	3.69036099231711	3.60880327258586	3.81635385900617	3.74323072722016	1.24835540160627	0.0241154473387673	0.144917083466029
Merged-chr19-59346347-2	chr19	59346247	59346447	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033222)	promoter-TSS (NM_001033222)	-567.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	3.36483942520731	3.14456844987404	3.308744987358	3.34795460077484	3.54462654122763	3.16381384886284	3.23819568609698	3.56700370414387	0.354460528013238	0.511728161158781	0.775628687274991
Merged-chr4-11192330-4	chr4	11192231	11192431	+	821.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282943, intron 1 of 11)	intron (NM_001282943, intron 1 of 11)	622.0	NM_001282943	12448.0	Mm.35867	NM_009830	ENSMUSG00000028212	Ccne2	-	cyclin E2	protein-coding	3.72575800794018	3.82715044361077	3.83694460581608	3.7160446290917	4.04925362876444	3.78686487683138	4.26033151204167	4.20111531094544	0.865860933546048	0.0468873785154423	0.222626690370934
Merged-chr8-40449430-3	chr8	40449321	40449521	+	874.3777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357249, intron 3 of 12)	intron (NM_001357249, intron 3 of 12)	25606.0	NM_001357249	70546.0	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik|DHHC-2	zinc finger, DHHC domain containing 2	protein-coding	3.88622588312367	3.72309327332065	3.84169471947365	4.0436783671961	3.13311227846088	3.64880762836624	3.45876070368304	3.40712316988769	-1.5596268367208	0.00326434066802941	0.0341042865712117
Merged-chr3-89396519-3	chr3	89396424	89396624	+	795.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040404, intron 1 of 1)	intron (NR_040404, intron 1 of 1)	2234.0	NR_040404	545539.0	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	-	predicted gene 15417	ncRNA	3.369464963145	3.66480160169478	3.36988408436768	3.26113065553125	3.34733601318703	3.54613166803253	3.57988197946166	3.86959848578446	0.573570586223166	0.271603782882548	0.583248237956304
Merged-chr1-54944836-1	chr1	54944736	54944936	+	694.0	f0_balb.idr	Intergenic	MER121|DNA|TcMar?	-18449.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	3.54211013931228	3.45644996863845	4.06317188307859	3.66502808475559	3.55808931294389	3.1357214853948	3.1636875147171	3.42861572385547	-1.1986040361207	0.0388932623828862	0.198091529242122
Merged-chr18-70601522-2	chr18	70601422	70601622	+	708.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_010773, intron 3 of 6)	intron (NM_010773, intron 3 of 6)	33230.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	3.21699327732126	3.16474263164576	3.27676487350962	3.38422762880653	3.14188340778227	3.20003571451742	3.56827078254628	3.38599308347471	0.222017224390847	0.684821428270266	0.870922734353662
Merged-chr9-88731936-4	chr9	88731845	88732045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007536)	promoter-TSS (NM_007536)	-95.0	NM_007536	12047.0	Mm.378888	NM_007536	ENSMUSG00000099974	Bcl2a1d	A1-d	B cell leukemia/lymphoma 2 related protein A1d	protein-coding	6.46779551031543	6.95787066088015	6.37825358964653	6.2622731038582	6.65503478945077	6.86865922130801	6.58355758003706	6.70261882693875	0.237011713650481	0.329862252536146	0.641212149364239
Merged-chr5-22550382-4	chr5	22550287	22550487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102315)	promoter-TSS (NR_102315)	-26.0	NR_102315	320719.0	Mm.459265	NR_102315	ENSMUSG00000097207	6030443J06Rik	1700030G06Rik	RIKEN cDNA 6030443J06 gene	ncRNA	7.91137267269506	8.16157699951991	8.05438059945698	8.3903774682189	8.1427667846798	8.26509510110714	8.38870810074866	8.31898356960436	0.162236848652981	0.357819549802485	0.663866486000028
Merged-chr12-32819512-2	chr12	32819412	32819612	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021524)	promoter-TSS (NM_021524)	-823.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	3.44356720193699	3.61253398261873	3.24983554217772	3.74626592348014	3.67542246510353	3.7830323952253	3.48991858021794	3.80685634982462	0.473652615304908	0.360447426356694	0.665843645817584
Merged-chr16-32644356-3	chr16	32644266	32644466	+	863.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016788)	promoter-TSS (NM_016788)	-277.0	NM_001110147	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	4.04646067506182	3.71671122969904	3.86655607211498	4.00514488044148	3.86485158309554	3.58796531778153	3.69764974069791	3.76349479850869	-0.522402865584546	0.258710024063815	0.570489393947544
Merged-chr6-149315083-4	chr6	149314974	149315174	+	819.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026054, intron 2 of 4)	intron (NM_026054, intron 2 of 4)	5660.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	3.19948109848382	3.33712454721089	3.19980903122128	3.55146771081625	4.02563822138584	3.88997667295687	3.65751407538089	3.45575773828532	1.36827449152248	0.0137915540482947	0.0989585711293917
Merged-chr7-125707805-4	chr7	125707724	125707924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207239)	promoter-TSS (NM_207239)	-46.0	NM_001081022	233865.0	Mm.274389	NM_001081022	ENSMUSG00000032743	D430042O09Rik	Kiaa0556	RIKEN cDNA D430042O09 gene	protein-coding	8.15382236665802	8.63350909785657	8.29805884488031	8.1961602922499	8.45445237948609	8.21378130887674	8.42204857210864	8.30938393457839	0.0283333797926076	0.872549113317859	0.952169704828551
Merged-chr10-67030260-2	chr10	67030160	67030360	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110511, intron 3 of 6)	intron (NR_110511, intron 3 of 6)	25185.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	3.11097554169579	3.24842961852503	2.84381204178752	3.11885333405093	3.41431507608036	3.15828047520235	3.10042896074009	3.22537100105871	0.549578719979496	0.341455231026639	0.650512335775525
Merged-chr19-5688938-4	chr19	5688787	5688987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022012)	promoter-TSS (NM_022012)	21.0	NM_144868	104401.0	Mm.329650	NM_144868	ENSMUSG00000054874	Pcnx3	Pcnxl3|mKIAA4073	pecanex homolog 3	protein-coding	7.79213232937605	8.06421028511303	7.80117608975589	7.3881196525016	7.89899704800817	8.21026509444731	7.74784194666456	7.6997643651332	0.165119844245328	0.438864935894666	0.726734768100838
Merged-chr2-38926367-4	chr2	38926253	38926453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010264, exon 1 of 11)	5' UTR (NM_010264, exon 1 of 11)	108.0	NM_010264	14536.0	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	7.14705576278338	7.43935336558684	7.25853271441218	7.1469555080797	6.98408486204102	7.3135926149615	7.13516724215449	7.02246744991182	-0.186480404284819	0.336984054668528	0.646859254800332
Merged-chr13-59856927-4	chr13	59856850	59857050	+	963.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33803.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	5.68308288847783	5.64681367478958	5.81404778787774	5.51559800016238	4.9065797778553	5.29597343048685	4.72797687302013	5.18290827343083	-1.1300845970358	0.000264094730617323	0.00456262107539088
Merged-chr5-34544333-4	chr5	34544239	34544439	+	835.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145858, intron 1 of 12)	intron (NM_001145858, intron 1 of 12)	974.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	3.98005828735749	3.42993004514144	3.98065512218456	4.02684977338632	4.08638917130236	3.84062492635897	3.91607711519251	4.06878126913229	0.284854447181683	0.548217664372513	0.797270046019351
Merged-chr1-86434554-4	chr1	86434472	86434672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	8243.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	8.28732669556947	8.14964325911887	7.93187709815346	8.05788452579646	8.33555685346521	8.47748710534511	8.28785042765934	7.99816886432563	0.223136165822442	0.207061917940696	0.511049184276
Merged-chr2-90479942-4	chr2	90479841	90480041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135657)	promoter-TSS (NM_001135657)	-767.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	5.9598219232407	5.81008916011718	5.96087618684159	6.08895412398173	5.48781990209705	5.8291223677769	5.62439850838257	5.56587096651616	-0.563420015138586	0.0289742108960756	0.16356216649788
Merged-chr6-88009401-3	chr6	88009300	88009500	+	908.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009005, intron 3 of 5)	intron (NM_009005, intron 3 of 5)	10395.0	NM_001293655	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	3.58087658359106	3.75291960576997	3.63544058766305	3.65793233767207	3.55901899916669	3.80554218304607	3.3290525426968	3.73499455155525	-0.134883078134907	0.783127541785355	0.915496954483708
Merged-chr6-34945770-3	chr6	34945695	34945895	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001025573, exon 8 of 8)	3' UTR (NM_001025573, exon 8 of 8)	24847.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	3.14933930115449	3.24281428585678	3.4724399060076	3.5560455547386	2.84823200485251	3.19769519585785	3.01209944129937	3.1481629912808	-1.28020504335786	0.0330466759594241	0.178361339711544
Merged-chr6-40573825-4	chr6	40573720	40573920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2432.0	NM_146383	258381.0	Mm.377469	NM_146383	ENSMUSG00000045514	Olfr460	MOR120-2	olfactory receptor 460	protein-coding	6.84880389367736	6.70269498623647	7.60841888292837	7.64891215972523	6.8225742143716	6.81454778928543	6.77231918009221	6.64743952495046	-0.71041431517517	0.00806659502467602	0.0675973825360742
Merged-chr15-31466505-4	chr15	31466392	31466592	+	955.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 23 of 25)	intron (NM_172606, intron 23 of 25)	-12803.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	5.25617137820832	5.40269431700855	4.84977326789428	5.33955486966588	4.90661517942805	4.98762863592021	5.01117618462152	5.06618111839115	-0.475192206246414	0.135672104059853	0.410046481885113
Merged-chr10-100589207-4	chr10	100589103	100589303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175128)	promoter-TSS (NM_175128)	56.0	NM_175128	68281.0	Mm.268474	NM_175128	ENSMUSG00000046567	4930430F08Rik	4930571E09Rik|A730088G13Rik|AW551239|C430008C19Rik	RIKEN cDNA 4930430F08 gene	protein-coding	7.1249148907119	7.02850806442105	7.42511693790737	7.50293910991527	6.93880047349669	6.91134943935347	7.2532757015684	6.95987325046163	-0.371431060028827	0.0785820696095024	0.303312896954329
Merged-chr3-106497044-5	chr3	106496975	106497175	+	738.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001093754, intron 8 of 11)	intron (NM_001093754, intron 8 of 11)	11035.0	NM_028110	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	3.00381755959643	2.94932571483886	3.36058381385785	2.9971037526084	2.88799155787167	2.69900918345401	2.66501429863077	2.94254052665564	-1.23812801006067	0.0604507916564937	0.25974791353196
Merged-chr14-20731428-4	chr14	20731349	20731549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010811, intron 2 of 14)	intron (NM_010811, intron 2 of 14)	3113.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	7.63409443921394	7.85448980840653	7.5155821489313	8.04065400678634	7.7454566043077	7.93023366746666	7.92743802638329	7.91221221132711	0.113543566338526	0.547062875339268	0.79668122846684
Merged-chr17-88511478-4	chr17	88511383	88511583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18641.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	6.13301144430453	5.93265924867855	5.66405812152586	5.8630722982617	6.00891727913884	6.14208463946477	6.19661501552843	6.25995569561526	0.382393171259232	0.117853164926162	0.379766871577676
Merged-chr12-16894766-7	chr12	16894659	16894859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009072)	promoter-TSS (NM_009072)	-219.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	6.96505635183834	7.12977338590911	6.52751675259424	6.46603207144507	6.99762276206182	7.24110008259357	7.33054272239642	7.08295448327874	0.51480150456592	0.0282292269444353	0.160913601720026
Merged-chr17-57334963-4	chr17	57334847	57335047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23739.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	5.63797593521181	5.90669605425487	5.27613674159526	5.68921459606781	5.86125986850684	5.96145492045459	5.63638576027623	5.581244366218	0.193672346557719	0.492561374229175	0.763585452602819
Merged-chr1-172247703-4	chr1	172247595	172247795	+	945.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013734, intron 7 of 22)	MER21C|LTR|ERVL	10729.0	NM_013734	27222.0	Mm.482392	NM_013734	ENSMUSG00000007107	Atp1a4	-	ATPase, Na+/K+ transporting, alpha 4 polypeptide	protein-coding	4.78865294874562	5.51509583442763	4.82845607532382	4.56573334829458	4.94249190761241	5.18163241172125	5.25409197611021	4.78634433905238	0.147685606473883	0.704443742252519	0.88127019884038
Merged-chr6-72051947-3	chr6	72051843	72052043	+	915.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9415.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	3.86617057799808	3.87787237813423	3.59640429170881	3.84421141165341	3.73404390008372	3.65168875855286	3.8503517125332	4.12720237522717	0.134737163124815	0.771516011051475	0.910391706878748
Merged-chr6-39207021-4	chr6	39206961	39207161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033430)	promoter-TSS (NM_001033430)	-288.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	5.91756212476772	6.03960309144067	5.94119107837051	6.03440066869287	5.96666696632025	5.97530866164298	5.88853883433459	5.91439814974145	-0.0833259884560489	0.723293247423536	0.889557768663126
Merged-chr10-94038724-1	chr10	94038624	94038824	+	719.5	f0_c57.idr	intron (NM_053072, intron 1 of 20)	RSINE1|SINE|B4	2723.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	2.79667434518324	2.65646903377758	2.87366669529098	2.71009588403028	3.45833864782114	3.38071454887735	3.54489385278799	3.51485433221199	2.97514601646524	1.29870818469761e-06	4.43360910688687e-05
Merged-chr7-143041290-3	chr7	143041201	143041401	+	908.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 2 of 4)	intron (NR_110355, intron 2 of 4)	-11449.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	3.57425400920422	3.84446202628361	3.91540558920341	3.24138020940892	4.38039100827661	4.04022491518399	4.20507443742572	3.91302258179091	1.38068617998438	0.00522245056295633	0.0490601568722012
Merged-chr13-113479441-4	chr13	113479323	113479523	+	935.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 3 of 6)	intron (NR_045501, intron 3 of 6)	23421.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	4.3535263554196	4.72883075418948	4.95678918368264	4.62529936640743	4.7010897238513	4.38331293326836	4.73997973436828	4.2519454588236	-0.300375440209336	0.441099869667026	0.728385282984091
Merged-chr2-75938475-4	chr2	75938367	75938567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028235)	promoter-TSS (NM_028235)	-5.0	NM_028235	72421.0	Mm.275109	NM_028235	ENSMUSG00000075273	Ttc30b	2510042P03Rik|Tcc30b	tetratricopeptide repeat domain 30B	protein-coding	5.31423628521026	5.27307006796845	5.50787908028064	4.93166611544755	5.29162196475363	5.65391931117007	5.09792920078462	5.18664948834826	0.119665541783253	0.711316380337742	0.884405406929924
Merged-chr10-58378024-4	chr10	58377908	58378108	+	847.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201242, intron 1 of 9)	B2_Mm2|SINE|B2	6554.0	NM_201242	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	4.02213729350655	3.94325175869783	4.02274026861049	3.93879722352441	3.96349613380242	4.04732779356081	4.2567646483229	3.64209371084692	0.0447068567567857	0.919610898397534	0.970343257381288
Merged-chr18-77704511-4	chr18	77704416	77704616	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178670, intron 1 of 4)	L1MC5|LINE|L1	9494.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	6.45427352785089	6.22204601039694	5.97838921474237	6.33743530722712	6.22641728257966	6.38621918665418	5.54532599105759	6.28117872521213	-0.173252780085646	0.531175282570193	0.787095803840917
Merged-chr18-4314109-4	chr18	4314022	4314222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38831.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	8.36375485965093	8.3902043262445	8.06507519720775	8.15647550120083	8.21748242243917	8.24908956562288	8.2056027969146	8.11807125578727	-0.0643613205713304	0.691142804662664	0.874342018894229
Merged-chr11-118164745-2	chr11	118164645	118164845	+	979.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001112699, exon 13 of 13)	3' UTR (NM_001112699, exon 13 of 13)	-35526.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	3.27483333053497	2.9486512763534	3.05661792585093	2.59384126011649	3.0976965949269	2.90289153090766	3.10233554630563	3.05497634946478	0.236121915215457	0.714074764645058	0.885690621093116
Merged-chr4-47474477-6	chr4	47474369	47474569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019998)	promoter-TSS (NM_019998)	-102.0	NM_019998	56737.0	Mm.22218	NM_019998	ENSMUSG00000039740	Alg2	1110018A23Rik|1300013N08Rik|ALPG2|CDGIi|MNCb-5081	asparagine-linked glycosylation 2 (alpha-1,3-mannosyltransferase)	protein-coding	6.10646000479771	6.45184984289967	6.59203057609053	6.02248413652017	6.39559025261121	6.69021339669139	6.16044423466949	6.37723175039719	0.169732794706721	0.506196871806704	0.771888853855569
Merged-chr17-73037110-4	chr17	73036990	73037190	+	846.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70895.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	4.19808726450032	4.18760959266112	4.24436066397903	4.71025444676952	4.26250733135278	4.00725855799322	4.13381110114465	4.28575573951045	-0.476665748526995	0.264004961368809	0.576076307335085
Merged-chr2-11706903-3	chr2	11706811	11707011	+	853.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271499, intron 1 of 6)	intron (NM_001271499, intron 1 of 6)	1199.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	3.76413981806052	3.91438497488746	3.47047222115698	4.03643490940444	3.76105554773091	4.08199294023247	3.74956831866205	3.76255123179721	0.0453959227337655	0.925533211802497	0.972503515835845
Merged-chr6-53068387-6	chr6	53068413	53068613	+	851.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_173406, exon 1 of 5)	exon (NM_173406, exon 1 of 5)	111.0	NM_173406	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	2.97460925380208	2.92130290077178	2.91528042070197	2.97679082213168	2.86169081758418	3.14199634899552	2.6386238063585	2.78574035702172	-0.353549337475107	0.574775888898958	0.812568700384484
Merged-chr13-30696552-3	chr13	30696429	30696629	+	881.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 4 of 7)	intron (NM_134068, intron 4 of 7)	36470.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	3.73646677851671	3.62811406879606	3.41692059763712	3.37580997467148	3.90156499460855	3.40330638149405	3.46313000982142	3.58489525643157	0.234502369153054	0.650934096270709	0.853573774220312
Merged-chr17-50110742-1	chr17	50110642	50110842	+	596.5	f0_balb.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	79755.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	2.86644407947836	3.0366076061636	2.806839672515	2.8020399410242	2.57386944425642	2.7128615752816	2.52905927300351	2.80542420877905	-1.1090762631698	0.0976993684597555	0.342534890532801
Merged-chr16-33921656-4	chr16	33921569	33921769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	45369.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	4.95157506934059	5.17804784580147	5.22999609207078	5.43580963858743	4.90333196637215	5.49306406775437	5.52941312266157	5.12927144184349	0.101739393899195	0.760213887080978	0.90597557094845
Merged-chr9-32709953-4	chr9	32709853	32710053	+	869.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038642, intron 1 of 6)	intron (NM_001038642, intron 1 of 6)	13911.0	NM_001038642	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	4.81197797334239	4.29216862787464	4.78002186330163	4.68914482261648	4.22745341155279	4.16109892095351	4.58004391646075	4.47849237628554	-0.651722815627167	0.0978879886276653	0.342824697034471
Merged-chr7-80905074-4	chr7	80905069	80905269	+	807.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291280)	promoter-TSS (NM_001291280)	-107.0	NM_001291280	68039.0	Mm.22246	NM_026523	ENSMUSG00000025723	Nmb	3110023K12Rik	neuromedin B	protein-coding	3.61102976409135	3.63181431016842	3.83831155846982	3.22591754745352	3.47027131147202	3.45046304187069	3.1962569614121	3.20502357608998	-0.842494892779887	0.134316997529543	0.407935723647066
Merged-chr13-97192859-3	chr13	97192757	97192957	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010422, intron 2 of 13)	intron (NM_010422, intron 2 of 13)	5500.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	3.67226839884272	3.43767814499789	4.01300515157503	4.3497798375166	3.51573877923503	3.7920430356473	3.65836493459383	3.67075289088038	-0.788074895210541	0.141284226432491	0.418183214955019
Merged-chr8-35596678-3	chr8	35596590	35596790	+	693.5	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-7670.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	3.64924073129587	3.6569784416117	3.7548261619575	3.77282223577232	3.98691496099051	3.52423703330996	3.83528554820877	3.64776220890992	0.173646480139967	0.713924064747496	0.885549996595951
Merged-chr11-93984808-4	chr11	93984699	93984899	+	930.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-11292.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	4.26675111688177	4.41870272596011	4.08314832937417	4.2282443886347	5.50004782627825	5.25016633561639	5.47263776635666	5.54216753552193	2.38119156872338	2.83596716745134e-12	2.81535993043262e-10
Merged-chr4-10978167-4	chr4	10978065	10978265	+	963.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29454.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	4.9203489517747	4.57305089601642	4.62572997724598	4.78428128220993	4.80017606929493	4.62651773350307	4.8301757906158	4.88449042781726	0.115903298240093	0.732290131950056	0.893952343664963
Merged-chr5-92675385-4	chr5	92675306	92675506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177230)	promoter-TSS (NM_177230)	-135.0	NM_001360019	320696.0	Mm.209991	NM_177230	ENSMUSG00000050050	Ccdc158	4932413O14Rik	coiled-coil domain containing 158	protein-coding	6.5614727780203	6.42223993634113	6.3732455844839	6.07671044359162	6.65450697641192	6.91637060235241	6.77387490271949	6.52557724828568	0.53814706733847	0.0190649986703016	0.123918139015012
Merged-chr5-143055758-4	chr5	143055645	143055845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	57275.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	6.60015729535544	6.97011250366831	6.82930871976098	6.86673299595773	6.87840520660851	6.96351862547003	6.79464971690307	7.01726436879429	0.118710719008611	0.553519730039838	0.800255537231239
Merged-chr12-110503019-3	chr12	110502926	110503126	+	870.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081457, intron 1 of 12)	intron (NM_001081457, intron 1 of 12)	17287.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	2.95251141320772	3.10005231661145	3.37631268961561	3.28083496276359	2.93056768250446	3.32402940079012	3.25576234130854	3.42479598432368	0.193169902488697	0.742999444715911	0.898691548174051
Merged-chr12-44269142-4	chr12	44269042	44269242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026164)	promoter-TSS (NM_026164)	-12.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	8.72838172370825	8.99107577560435	8.63963368892753	8.94027398077722	8.9618630693269	9.22500517529858	9.12834115716295	8.85609081852418	0.26307363796507	0.111695583294799	0.369355629423483
Merged-chr8-95832818-4	chr8	95832709	95832909	+	956.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20682.0	NM_172758	234595.0	Mm.29267	NM_172758	ENSMUSG00000036534	Slc38a7	D430050E18	solute carrier family 38, member 7	protein-coding	4.11328617843541	4.42335664332623	4.16942854006016	4.34297132733067	4.8121058679887	4.72076003855783	4.78194043416314	4.98792021859834	1.20536925329957	0.000962586855934178	0.013043207656299
Merged-chr10-14132444-4	chr10	14132336	14132536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010437, exon 4 of 9)	exon (NM_010437, exon 4 of 9)	166057.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	6.03540651861251	6.00495574232098	6.56897140391508	6.12242373820709	5.68344618036788	5.24433221536383	5.3342162252307	5.57621942646052	-1.1641898619173	5.72422458716336e-05	0.00127088141575078
Merged-chr19-10025710-4	chr19	10025625	10025825	+	976.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153790, intron 1 of 10)	intron (NR_153790, intron 1 of 10)	7531.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	5.34176912293329	5.01180388156696	5.37196288895541	5.53025669858401	5.31596742870827	5.107431861191	5.37355762310843	5.67442095243951	0.0806511385880618	0.796055606416637	0.921026023782607
Merged-chr7-145089412-4	chr7	145089301	145089501	+	904.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	118718.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	4.41970713458437	4.45153522456478	4.46285788228574	4.74712100272119	4.33547687657152	4.50533785370283	4.26561300721877	4.57934954301271	-0.276519267170373	0.465782562847278	0.746206100403026
Merged-chr4-26444008-1	chr4	26443908	26444108	+	606.5	f0_balb.idr	Intergenic	RMER4B|LTR|ERVK	-97356.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	2.86763315256119	3.01073336180979	2.98356020980395	2.96696422220059	2.91398027181885	2.5445235582397	2.85783747588191	2.5994842788733	-0.990107166760841	0.145983619232506	0.425876799596318
Merged-chr18-23754571-4	chr18	23754486	23754686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 1 of 7)	intron (NM_001162941, intron 1 of 7)	861.0	NM_001162941	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	6.79755614202161	6.70096383561249	6.51253718180919	6.51434961897546	7.72400083906894	7.657823627796	7.51165864367504	7.46685063740921	1.32440122986514	3.54964617249429e-12	3.46109951934207e-10
Merged-chr4-137469071-2	chr4	137468971	137469171	+	662.5	f0_balb.idr|f0_c57.idr	intron (NM_008305, intron 1 of 96)	CpG	268.0	NM_008305	15530.0	Mm.273662	NM_008305	ENSMUSG00000028763	Hspg2	AI852380|Pcn|Plc|per	perlecan (heparan sulfate proteoglycan 2)	protein-coding	4.01241793433415	4.51161214221946	4.19570966509161	3.83065883969518	3.99775374847667	4.03407459085451	4.04344582896651	3.6780559319797	-0.555433042840323	0.235915573436719	0.545911397973089
Merged-chr11-35091101-3	chr11	35090989	35091189	+	820.6444700000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30367.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	3.94217588245826	4.22605009391482	3.84559182210708	4.54736894705059	3.05877121089616	3.48508495959285	3.48964275834078	3.68270014093395	-2.35409213273993	5.49843981204019e-05	0.00122764569442035
Merged-chr17-83267699-4	chr17	83267579	83267779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52396.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	8.28929619256139	8.05212697998473	8.04776108499811	8.39509516841411	8.20793360492746	8.0760737699046	8.23507847347991	8.09488854945576	-0.0699688587564868	0.678510344643977	0.868112820688421
Merged-chr15-8444638-4	chr15	8444528	8444728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027707)	promoter-TSS (NM_027707)	-165.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	6.86081256829241	6.94127530536281	7.06449765802987	6.74946742248023	7.06721819590722	6.99696408749299	7.01720346869999	6.72712174077452	0.088384099230833	0.662267492673434	0.859959461854246
Merged-chr5-143537255-4	chr5	143537156	143537356	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9225.0	NM_001347530	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	5.49998016217599	4.87181052128674	5.33084653354782	5.54947332958621	5.30287142946128	5.47535994608681	5.36319302595606	5.64669014453696	0.176521405534295	0.575403963426915	0.813026770185778
Merged-chr8-69832424-4	chr8	69832260	69832460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024954)	promoter-TSS (NM_001024954)	-264.0	NM_001357308	80720.0	Mm.210823	NM_001024954	ENSMUSG00000031860	Pbx4	2410015M21Rik|AI429113|AW045266	pre B cell leukemia homeobox 4	protein-coding	5.67686449150221	6.15431075105505	6.0508532193057	6.05727753035092	6.70615851490624	6.76609916482737	6.83846559018714	6.83196276055379	1.14574334699335	3.72208902145088e-07	1.41676243025589e-05
Merged-chr10-28520104-3	chr10	28519997	28520197	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359356, intron 13 of 30)	intron (NM_001359356, intron 13 of 30)	-148263.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	5.53473853493162	5.99973483212471	5.58364568230092	5.98410196100227	4.30268174331865	4.60023979169609	4.49215089274665	4.34268998751087	-2.75779623452061	1.07157296610492e-14	1.65452260638573e-12
Merged-chr17-87282143-4	chr17	87282022	87282222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028639)	promoter-TSS (NM_028639)	692.0	NR_015506	74597.0	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	7.77655015479645	8.0803639754812	7.65122668654523	8.07120797503744	8.09629402197948	8.08497420971432	8.11147887069071	7.79643833352589	0.145582889659203	0.43210637480041	0.722198138555674
Merged-chr3-144043335-4	chr3	144043250	144043450	+	821.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	158982.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	3.83757015945853	4.23825384798751	3.67128364210399	3.23950903650793	4.25264206356965	4.24664602991067	3.76909023234942	3.54568843721615	0.512808826170674	0.362180802352801	0.667404354318051
Merged-chr17-29362503-4	chr17	29362384	29362584	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013710, intron 1 of 15)	intron (NM_013710, intron 1 of 15)	1570.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	5.59655924809644	5.28677371024161	5.10763892786624	5.69183996643463	5.70533569344547	5.13291973671681	5.46394704305063	5.84555971912943	0.198652435307468	0.537333369794049	0.791025044540353
Merged-chr13-93188362-1	chr13	93188262	93188462	+	563.0	f0_balb.idr	intron (NR_154997, intron 1 of 15)	L1_Rod|LINE|L1	4055.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	3.12985654600283	3.26630751933789	3.13023511392622	3.11063439173578	3.19033181671214	3.11155990194036	3.23306499902385	3.24389356595095	0.145844366113482	0.787391145615326	0.917533754952331
Merged-chr7-127290417-4	chr7	127290317	127290517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	-5843.0	NM_001253873	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	6.73035250178969	7.01325062507937	6.44673450547182	6.33926286480707	6.53002189931172	6.81956004486331	6.51551279547778	6.36908530417271	-0.124932526820552	0.616264542635703	0.834889491440173
Merged-chr17-51788385-4	chr17	51788203	51788403	+	864.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357637, intron 5 of 10)	intron (NM_001357637, intron 5 of 10)	23751.0	NM_001163630	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	3.96176771222498	3.41179941156772	3.48220984943603	3.66204981687055	3.4280591676576	3.71172278990892	3.28440677711274	3.64413970706333	-0.387925261371084	0.461042274870181	0.7429215866116
Merged-chr11-59208304-4	chr11	59208215	59208415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024210)	promoter-TSS (NM_024210)	-46.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	7.24238329630931	7.11249563313791	7.10412475759211	6.85324970272222	7.56962092130669	7.70471931414996	7.35216757189651	7.65553515749472	0.678147277990388	0.000438828320437357	0.00693207381681917
Merged-chr14-75006091-4	chr14	75005988	75006188	+	874.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 3 of 3)	intron (NR_030568, intron 3 of 3)	-9939.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	4.36211213942557	4.4148846853016	4.65383480121458	5.22166422845362	4.38616590983991	4.23401482555875	4.63163980242084	4.31269242743401	-0.73611155091288	0.0878503820801923	0.323291404512771
Merged-chr13-101719657-6	chr13	101719550	101719750	+	981.048584	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	-27020.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.21387217230045	4.26436872966704	4.01973421314438	4.34680593337288	4.01642769268544	4.47170196836053	3.89534952529325	4.41962349234174	-0.0179454692351964	0.966720600500426	0.988254805868613
Merged-chr15-58989667-3	chr15	58989549	58989749	+	973.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	55839.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	4.64214407993968	4.51186845405123	4.14136018132534	3.9416051897376	4.21199353941736	4.06133386150688	3.80734233152111	3.98877424501115	-0.759891754718783	0.100826213667052	0.348517921012773
Merged-chr16-23557424-4	chr16	23557327	23557527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36612.0	NM_001359083	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	6.9013924565983	6.94415803846615	6.99584230299949	7.17495946383349	7.0628470918422	7.24744279536727	7.40741676707828	7.18106525313822	0.282147885423519	0.149979052159735	0.432360854406563
Merged-chr18-4350714-5	chr18	4350514	4350714	+	828.357117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 1 of 7)	intron (NM_007746, intron 1 of 7)	2339.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	3.53945726829617	3.75206187425598	3.594549353944	3.2246739401043	3.68441893748165	3.53902899201023	3.46986030462245	3.78996127167829	0.311265633753572	0.544756438333249	0.79550332404904
Merged-chr9-107533991-4	chr9	107533873	107534073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019704)	promoter-TSS (NM_019704)	28.0	NM_019704	56395.0	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	7.6528904360855	7.8624332294995	7.64575003728607	7.85793052717593	7.57356198547356	7.429759424869	7.67407251804182	7.51627442560298	-0.280223786031334	0.105883802771423	0.358480935952584
Merged-chr12-73593574-4	chr12	73593472	73593672	+	907.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 1 of 13)	intron (NM_008856, intron 1 of 13)	8776.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	4.93939567693911	4.65297052624569	4.90807315279776	5.42568228281356	4.35712187489439	4.19546517216506	4.32510427851821	4.52857555397622	-1.46157171429149	0.000237064361828284	0.00417892666830705
Merged-chr12-84174475-4	chr12	84174486	84174686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	19429.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	6.42998176804241	6.30312920728716	6.52740755316509	6.18822360335797	6.73542527727653	6.0536221766761	5.989836339411	6.12666558779902	-0.117384444073495	0.665244532376999	0.861320791391846
Merged-chr11-53926495-4	chr11	53926392	53926592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34789.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	5.88412168334311	6.16786514379032	5.83857210812789	5.84013514332306	5.78703052327932	5.91595854966305	5.83227500854654	5.73587076000853	-0.193707875873719	0.439981391929008	0.727500359972934
Merged-chr2-128709621-4	chr2	128709518	128709718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	10703.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	6.5847452082177	6.37057381079478	7.24712439666693	6.64889688159156	5.95887103992581	6.28718290972579	6.07646689413527	6.16867289424821	-0.930504466631243	0.000504827101676034	0.00777604160792002
Merged-chr17-87301772-4	chr17	87301654	87301854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	L1MB2|LINE|L1	18868.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	7.73640323538	7.59220701260052	7.61298746118133	7.80335827343755	7.13596331851824	6.94712706729192	6.86935776710909	6.89946188497575	-0.967505386023312	1.93436927507942e-07	7.82309492220897e-06
Merged-chr6-148246710-3	chr6	148246615	148246815	+	747.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198967, intron 16 of 19)	intron (NM_198967, intron 16 of 19)	-34341.0	NM_001286560	67456.0	Mm.59812	NM_026168	ENSMUSG00000030304	Ergic2	1200009B18Rik|4930572C01Rik|AA408438|Ptx1	ERGIC and golgi 2	protein-coding	3.6202839358957	3.43806913951387	3.71826071709911	3.6058886589071	3.63417892719416	3.51383770709163	3.44618986586499	3.33712340244689	-0.341184493470272	0.494922815242264	0.765380871135718
Merged-chr3-132753111-4	chr3	132752997	132753197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163455, intron 22 of 25)	intron (NM_001163455, intron 22 of 25)	68953.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	5.30535804563572	5.65692077963982	6.05747469186733	6.08633916259097	5.37483512443284	5.64398182991706	5.58046599912368	5.78053965809817	-0.383150019973731	0.210680901699864	0.515292966191141
Merged-chr15-57037925-3	chr15	57037804	57038004	+	655.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	227257.0	NM_001357930	210463.0	Mm.26555	NM_172378	ENSMUSG00000022366	Slc22a22	oat-pg	solute carrier family 22 (organic cation transporter), member 22	protein-coding	3.66492486105932	3.50890965180455	3.42173622535513	3.31486342565167	3.05923342714087	3.36284010231029	3.11089574357589	3.24780158415028	-1.0527120183363	0.0586242050662419	0.254797111339686
Merged-chr6-136658160-4	chr6	136658087	136658287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	3706.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	6.09791543964262	6.55608238768711	5.89559009943092	6.0784621120094	6.02929253597715	6.18912266815058	6.04687161531098	6.28766502065351	-0.0669961660686203	0.794586572278735	0.920576505358097
Merged-chr14-55823574-4	chr14	55823454	55823654	+	871.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1241.0	NM_001168346	73181.0	Mm.27908	NM_023699	ENSMUSG00000023411	Nfatc4	3110041H08Rik|AW107667|AW546455|Nfat3	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4	protein-coding	3.84299544172314	3.84666084730799	3.93492955245761	3.50474550049524	3.87161788013204	3.75697155201004	3.31737078415256	3.63652016157727	-0.350871237911746	0.494047453063242	0.764773251741736
Merged-chr8-36746143-2	chr8	36746087	36746287	+	742.799988	f0_balb.idr|f1_balb.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	-13133.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	3.93121259193184	3.42998768184562	3.93188781923587	3.76225434922202	3.13771190793587	3.18126800266865	3.13169692091518	3.20981809141769	-2.27318786694909	0.000112163383400618	0.00223382133941595
Merged-chr6-128479945-4	chr6	128479859	128480059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028593, intron 2 of 4)	intron (NR_028593, intron 2 of 4)	41202.0	NR_028593	791299.0	Mm.297516	NR_028592	ENSMUSG00000059659	Gm10069	-	predicted gene 10069	ncRNA	6.42392228454255	6.50555351212429	6.44315614934596	6.59976405997221	6.86231583340231	6.65564075327941	6.99858405449583	6.62207033245738	0.421876567249545	0.0466520975415019	0.222057620095397
Merged-chr3-79178935-4	chr3	79178800	79179000	+	915.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33025.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	4.41200116856276	4.96651698907977	4.27537044748559	4.40929777429865	4.45917230165567	4.30241510169909	4.47598020307464	4.36579958360983	-0.318423218685933	0.42714459243484	0.718354140121047
Merged-chr3-109464814-4	chr3	109464714	109464914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-109193.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	6.15906591008097	5.31106757501651	5.9334819793939	6.29178863302082	5.46225345758873	5.91669065076999	6.23611546823907	6.21100065787624	0.00848224548073636	0.979612263087618	0.99269129061727
Merged-chr14-30888409-4	chr14	30888243	30888443	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018746, intron 2 of 22)	intron (NM_018746, intron 2 of 22)	1867.0	NM_001289632	16427.0	Mm.34819	NM_018746	ENSMUSG00000021922	Itih4	ITI-HC4|Itih-4|PK-120	inter alpha-trypsin inhibitor, heavy chain 4	protein-coding	3.30913487429279	3.677775332125	3.67848218354192	3.28656194414669	3.35656277088407	3.48366270393059	3.23620933307868	3.30789558583845	-0.509793678032834	0.34419489614904	0.652674654687177
Merged-chr5-34573687-4	chr5	34573583	34573783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331081)	promoter-TSS (NM_001331081)	19.0	NM_001331086	11518.0	Mm.289106	NM_013457	ENSMUSG00000029106	Add1	AI256389	adducin 1 (alpha)	protein-coding	8.2252302393825	8.05152225845163	7.90475191379954	7.94520349908031	8.01207509222019	8.09674157295161	8.09388594709014	7.99137692633695	0.0185481532540356	0.909446593473793	0.966320459266825
Merged-chr13-41525475-4	chr13	41525374	41525574	+	917.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38114.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	4.69280966253407	4.3431958043146	4.48792151794948	4.73966700867889	4.83860667055431	4.52604146600688	4.81364026024923	4.86721520396104	0.394156192335204	0.272386491658359	0.583838924250549
Merged-chr17-45752866-4	chr17	45752787	45752987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	18381.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	8.78822060713622	8.97297260148406	9.2649692401291	9.04137136539939	8.52777533256013	8.46142651275832	8.88469115536229	8.571287113324	-0.507344742347808	0.00383508827166253	0.0387639068336199
Merged-chr7-16614232-4	chr7	16614149	16614349	+	778.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136929, intron 1 of 2)	GC_rich|Low_complexity|Low_complexity	209.0	NR_136929	102634559.0	Mm.421602	NR_136928	ENSMUSG00000100583	Gm29443	-	predicted gene 29443	ncRNA	4.10019716476698	4.29262447713883	4.10078980873796	4.014550778997	4.38784212310548	4.54253312953523	4.39249463602904	4.19547049042423	0.637721849680743	0.102643325179755	0.351917942259349
Merged-chr6-136520444-2	chr6	136520343	136520543	+	641.375	f0_c57.idr|f1_balb.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	1592.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	3.91488480656963	3.43222707892143	3.09066492215571	3.09619089518435	3.88157976417784	4.04077729744084	3.71054407946244	3.72465333902611	1.29832303319421	0.0237079055899453	0.143203072979185
Merged-chr15-36518018-4	chr15	36517915	36518115	+	976.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025712, intron 11 of 13)	B3|SINE|B2	-21224.0	NM_175134	68839.0	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	4.38724756127447	4.87836883484043	4.56778499634714	4.7954315627057	5.16819601173338	4.36051783815661	4.74270302680257	4.90024507963645	0.33547104543098	0.393322142450484	0.692447094058087
Merged-chr11-73019529-4	chr11	73019430	73019630	+	941.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152202)	promoter-TSS (NR_152202)	522.0	NM_018883	55984.0	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	5.11517438967934	4.516940346036	5.11606999266807	5.1303513549867	4.56906915134758	4.28849899836044	4.4511711537885	4.55802333652551	-1.10574046258801	0.00351470577855171	0.03618357573207
Merged-chr1-36082425-4	chr1	36082327	36082527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	14027.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	7.02229841439845	7.45906723448869	7.7106284671929	7.73651920592875	6.89151522527408	6.94267118789141	7.54620535455479	7.1546471358487	-0.484232498363864	0.0460448654989186	0.220279302468384
Merged-chr2-148889154-4	chr2	148889056	148889256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13644.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	6.16945736768396	5.55609716757965	5.57770695228369	5.89866692054788	5.7841062853495	5.69765354712545	5.70663346673437	5.54547385928947	-0.225429714316945	0.420552123617178	0.713388099239967
Merged-chr10-7063174-4	chr10	7063059	7063259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39974.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	7.41245993415136	7.16160506142609	7.59169567958435	7.62454841013309	7.22459097364692	6.94346918516894	7.28803916296218	7.22344477594693	-0.384841026309193	0.055252227302712	0.24578453141552
Merged-chr2-25575552-3	chr2	25575463	25575663	+	757.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029293)	promoter-TSS (NM_029293)	-692.0	NM_029293	75454.0	Mm.458079	NM_029293	ENSMUSG00000036504	Phpt1	1700008C22Rik|PHP|Php14	phosphohistidine phosphatase 1	protein-coding	3.66747088691909	3.48291811298703	4.07595266487887	3.53846492667622	3.87223824660813	3.61390760886461	3.35853605240389	3.81682551392104	-0.0599595403053424	0.908846357225895	0.966100563913989
Merged-chr3-107098236-4	chr3	107098124	107098324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3343.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	6.07897564250654	6.60795870192945	6.30362013932232	6.24243301772333	6.51691404674494	6.38336568880685	6.41146142908877	6.11937028772002	0.0731560723165226	0.760939154683467	0.906431126096988
Merged-chr14-55604430-1	chr14	55604330	55604530	+	1000.0	f0_balb.idr	promoter-TSS (NM_001159418)	promoter-TSS (NM_001159418)	-149.0	NM_001159418	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	5.4633681198621	5.23600625127678	4.92149137664212	5.51772118160124	5.4950603350776	5.74286689862437	5.56716948543118	5.40395181999677	0.407352545137115	0.179828181163383	0.47608383943422
Merged-chr8-36867775-4	chr8	36867642	36867842	+	675.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 2 of 17)	intron (NM_001194940, intron 2 of 17)	84700.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	3.07810133121261	3.34266209986895	3.14416589937371	3.02030163124417	3.48345921703756	3.31921444571501	3.36482370406687	3.47940520494487	0.993142728486391	0.0620807963991795	0.263516748283127
Merged-chr15-5432230-4	chr15	5432152	5432352	+	925.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64066.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	4.53658408168206	5.26337777316439	5.03717014667212	4.01860396923668	5.23406214534907	5.0775877294817	4.87880985232149	4.70932329182072	0.379402964620879	0.388338246283908	0.688971286945222
Merged-chr11-59169998-3	chr11	59169907	59170107	+	940.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6262.0	NM_173785	216792.0	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	4.10160807913542	3.77457797408193	3.64381603571936	3.80647298021282	3.19697192974266	3.12605246466863	3.15416088408762	3.1623578274552	-2.52857861959095	2.27015421808545e-05	0.000569771886773993
Merged-chr12-108613306-4	chr12	108613215	108613415	+	993.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163395, intron 1 of 12)	intron (NM_001163395, intron 1 of 12)	7549.0	NM_001163395	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	5.77866929505625	5.79941403278551	5.03906558869553	5.88408110491287	5.7808577688475	5.83156881545356	5.65351846862312	5.62667584361742	0.0769342108759463	0.799548621803431	0.922592992759239
Merged-chr1-154112653-1	chr1	154112553	154112753	+	797.333313	f0_balb.idr	Intergenic	MIR|SINE|MIR	-88534.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	3.46621335861711	3.3291512951988	3.36448902205642	3.62485015667522	3.15411878643868	3.24221797504167	2.84319366432505	3.06496332618808	-1.44261473883262	0.0158605879892253	0.109037561397713
Merged-chr3-126673257-3	chr3	126673159	126673359	+	740.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	MTA_Mm|LTR|ERVL-MaLR	76308.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	3.45776054625445	3.61634924955884	4.0462077439495	3.56603900610008	3.88541861425819	3.64250151279816	3.98417615269502	4.27732302948449	0.803284315597619	0.104674720487164	0.35576242418157
Merged-chr13-60708355-3	chr13	60708251	60708451	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	RMER15|LTR|ERVL	78013.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	2.83999029837772	2.79923194783665	2.89937119660722	3.03974893828282	2.68655227164772	2.59816479181111	2.8302807973776	2.7771668496893	-0.852532061096139	0.187228049726622	0.485494122144766
Merged-chr4-120405604-4	chr4	120405546	120405746	+	980.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013883, intron 1 of 16)	CpG	365.0	NM_013883	29871.0	Mm.427014	NM_013883	ENSMUSG00000000085	Scmh1	AI315320|AI851618|Scml1|Scml3	sex comb on midleg homolog 1	protein-coding	4.47488388391938	4.21039214590845	4.51668947311425	4.62011345146818	4.68265732949567	4.27069719678855	4.6106237427825	4.55354545670251	0.163195191903595	0.667444395892184	0.862480704667679
Merged-chr11-86356342-4	chr11	86356235	86356435	+	943.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080931, intron 1 of 29)	intron (NM_001080931, intron 1 of 29)	1190.0	NM_001080931	327987.0	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	4.91042871387535	5.08687460070205	4.68770712018879	4.26635110652509	4.72797755440479	5.0834927404077	4.6657973483707	4.94158297723131	0.203698289820748	0.599388539599525	0.826316125212269
Merged-chr10-108157977-4	chr10	108157860	108158060	+	954.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1a|LTR|Gypsy	-4440.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	4.54387603593137	4.63352876347381	4.30806075716388	4.79155737909972	4.97507870748795	5.1492618012991	4.43529595801702	4.66536674262037	0.505719964539693	0.191426016806649	0.490854206495116
Merged-chr14-57372574-4	chr14	57372469	57372669	+	789.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030004, intron 2 of 7)	intron (NM_030004, intron 2 of 7)	25914.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	4.50526879637593	4.12659201463488	3.95708951834509	4.22045136241282	4.38266318910634	4.43288378446193	4.14916914467696	4.46532999623352	0.354104914736576	0.380514169062242	0.682947704213538
Merged-chr12-100776201-4	chr12	100776089	100776289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2868.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	7.15309888409819	7.22563164459693	7.16509055827984	6.83766247527722	6.62594780816952	6.78613602231224	6.55767147255014	6.75999461682656	-0.576541187722196	0.00579394300045997	0.0529405736623544
Merged-chr3-88553660-4	chr3	88553546	88553746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033526)	promoter-TSS (NM_033526)	-70.0	NM_033526	94232.0	Mm.303059	NM_033526	ENSMUSG00000008604	Ubqln4	A1Up|A1u|AI663987|CIP75|UBIN	ubiquilin 4	protein-coding	7.41788319274633	7.73648941113899	7.19000540031082	7.42889630527983	7.53915244832174	7.66439870545142	7.82192407984826	7.63294564521364	0.270952851490841	0.15889909286096	0.446088552276769
Merged-chr4-43630336-3	chr4	43630244	43630444	+	917.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1591.0	NM_001355466	230103.0	Mm.103477	NM_173788	ENSMUSG00000028469	Npr2	GC-B|GC-B2|GC-B3|cn|mNPR-B|pwe	natriuretic peptide receptor 2	protein-coding	4.17446318655719	3.99386412924563	3.67167974876687	3.85058016582338	3.38962755992761	3.96741809204302	4.41503166427158	4.04090078099637	0.188504285854371	0.718860391568265	0.887684154524562
Merged-chr11-98682409-4	chr11	98682294	98682494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009439)	promoter-TSS (NM_009439)	-160.0	NM_009439	22123.0	Mm.12194	NM_009439	ENSMUSG00000017221	Psmd3	AI255837|AntP91a|D11Bwg1349e|Psd3|Tstap91a	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	protein-coding	7.63167207331711	7.95289618906011	7.47767406956203	7.08185635681537	7.81008419650527	8.05877328493558	7.76356817628086	7.57511886935269	0.32169594016648	0.161278793601408	0.450024040525094
Merged-chr1-101902288-4	chr1	101902196	101902396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	746528.0	NR_037989	100504525.0	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA	6.17501315337696	6.03769866846446	6.30433451575745	6.32563062793707	5.78706104180336	5.92185738828042	6.1444759804033	5.98499609146562	-0.408915031540439	0.0909999691977249	0.329649692479254
Merged-chr17-79715802-4	chr17	79715734	79715934	+	834.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009994)	promoter-TSS (NM_009994)	-793.0	NM_009994	13078.0	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	4.59514668845406	4.76410715348504	4.74374872771531	4.84419935302094	4.64791218354889	4.19813773745926	4.4523447114982	4.23394010662304	-0.745629671154696	0.049742384672671	0.230900920550772
Merged-chr2-118545425-4	chr2	118545387	118545587	+	791.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_138603)	promoter-TSS (NR_138603)	-900.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	4.02881930311858	3.65803666932712	3.70481271306117	3.91420911029731	3.6222064254018	3.65205644495421	3.46245603633203	3.80414705503214	-0.601467695997909	0.210433140332878	0.514934698011342
Merged-chr14-62347358-4	chr14	62347260	62347460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026001, intron 2 of 10)	intron (NM_026001, intron 2 of 10)	15292.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	7.2276496915155	7.45197167279968	7.25053237509377	7.03277230762165	7.40424260036678	7.05688068031753	7.33635291214883	7.07339741084394	-0.0105189281726121	0.958589053921065	0.985248919859626
Merged-chr1-191119519-4	chr1	191119396	191119596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	21082.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	6.92266255346347	6.91203138661164	6.9594653220909	6.96266976579853	6.02928655330191	6.0072961825866	6.41298482005985	6.12324501131167	-1.15689599705192	1.01536164076279e-07	4.34329484542396e-06
Merged-chr14-87125697-3	chr14	87125613	87125813	+	810.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019670, intron 1 of 27)	B3|SINE|B2	15511.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	3.21820358994532	3.43153262050246	3.56781503300294	3.44672847305618	3.38943213102912	3.45914758289536	3.69556737397146	3.51376615840148	0.310790144369057	0.540895184341381	0.793009827469438
Merged-chr11-21024700-4	chr11	21024599	21024799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66625.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	6.495960137452	6.46507547110446	5.9345623057904	6.4984626510049	6.58996054180277	6.2334743474879	6.64380636005564	6.26192013851246	0.10953734801274	0.660711399960494	0.859001764228847
Merged-chr16-15636694-1	chr16	15636594	15636794	+	857.0	f0_c57.idr	exon (NM_008565, exon 2 of 16)	exon (NM_008565, exon 2 of 16)	706.0	NM_008565	17217.0	Mm.1500	NM_008565	ENSMUSG00000022673	Mcm4	19G|AI325074|AU045576|Cdc21|Mcmd4|mKIAA4003|mcdc21	minichromosome maintenance complex component 4	protein-coding	2.72828810906659	3.02622417908455	2.65540873234997	2.83490989880179	3.03078601470962	3.15441010427282	2.91632102511218	2.98513283580617	0.864492589511587	0.161462978803795	0.450273208285352
Merged-chr3-145105645-4	chr3	145105553	145105753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6547.0	NM_178697	229933.0	Mm.331420	NM_178697	ENSMUSG00000036960	Clca2	4732440A06|AI586120|Clca5	chloride channel accessory 2	protein-coding	7.19240141799685	6.90074744283207	7.18266576184739	7.25922002020905	7.08120204386698	7.20721131122449	7.00728437420554	6.98750781636828	-0.100175770813441	0.605452574427317	0.828855421686386
Merged-chr8-113656336-4	chr8	113656256	113656456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001048145)	TTS (NM_001048145)	13143.0	NM_001048145	668110.0	Mm.390078	NM_029139	ENSMUSG00000033409	Syce1l	4930481F22Rik|MMRP|PSESS|mmrp2	synaptonemal complex central element protein 1 like	protein-coding	8.54576318497091	8.68971217170006	8.35772593245915	8.6086183176824	8.59335113285455	8.5519346999805	8.66766923107975	8.25464364072061	-0.0395933744745458	0.813397804551294	0.927857767644014
Merged-chr4-111720517-4	chr4	111720403	111720603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026470, intron 1 of 12)	intron (NM_026470, intron 1 of 12)	493.0	NM_026470	67946.0	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	7.17346421449618	6.98751093004347	7.25205433020473	7.09461614841358	7.33687075102169	7.53998666779328	7.43078049487808	7.06305450108961	0.30802207362849	0.113728832084015	0.372943174187234
Merged-chr2-127252971-3	chr2	127252871	127253071	+	651.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175145, intron 2 of 3)	MIRc|SINE|MIR	4996.0	NM_175145	69470.0	Mm.200889	NM_175145	ENSMUSG00000034850	Tmem127	2310003P10Rik|AI314202|AI317350	transmembrane protein 127	protein-coding	3.23268639589788	3.35096376599881	3.17417188342426	3.56001222997123	3.0684980843725	3.22182447774959	3.22116188814205	3.04639046484998	-0.809926227743299	0.153654238516119	0.438442775840401
Merged-chr15-59439095-2	chr15	59438995	59439195	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 3 of 4)	MTC|LTR|ERVL-MaLR	64897.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	3.49779869588888	3.17592943648394	3.12806580488083	3.15147744147403	2.98708743769341	3.17584685016943	3.28661912473776	2.99805015533171	-0.498220598608017	0.38725518851877	0.688139428549813
Merged-chr5-45448826-3	chr5	45448747	45448947	+	662.211121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024236, intron 1 of 6)	MTD|LTR|ERVL-MaLR	1382.0	NM_024236	110391.0	Mm.30204	NM_024236	ENSMUSG00000015806	Qdpr	2610008L04Rik|D5Ertd371e|Dhpr|PKU2	quinoid dihydropteridine reductase	protein-coding	3.2171245721544	3.27396869548407	3.49895242037162	3.56834622711506	3.4422590448321	3.32799949082493	3.38062649928219	3.27731001643064	-0.162070166661969	0.760263937795163	0.90597557094845
Merged-chr17-36266066-4	chr17	36265953	36266153	+	918.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357889, intron 3 of 4)	ORR1E|LTR|ERVL-MaLR	5378.0	NM_001357889	79263.0	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	4.30613140110247	4.04075030328539	4.15618987338987	4.19425102235448	4.77365566334168	5.12868828521428	4.58055999920976	4.30411198213247	1.2467981151183	0.001893862448982	0.0224000058584397
Merged-chr6-118128200-4	chr6	118128107	118128307	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362149, intron 2 of 7)	intron (NM_001362149, intron 2 of 7)	10623.0	NM_001362149	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	5.04922929905787	5.08875967290917	5.5698836541068	5.73654315838773	4.72150211620914	5.03883676305689	5.12755709634088	5.30405569136707	-0.650763001774946	0.0642939335275624	0.26943643771318
Merged-chr15-73726172-4	chr15	73726013	73726213	+	980.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	1183.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	4.63901705312276	4.29480587881703	4.56363020787472	4.51744218242044	4.46273447251016	4.4318931388618	4.68889335750352	4.43732218562101	0.00331960093462857	0.992761957343828	0.997386037372106
Merged-chr4-116995348-4	chr4	116995257	116995457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009478)	promoter-TSS (NM_009478)	9.0	NM_175244	76608.0	Mm.251420	NM_175244	ENSMUSG00000046861	Hectd3	1700064K09Rik|AI467540|AW743312	HECT domain E3 ubiquitin protein ligase 3	protein-coding	5.10655471585015	5.15402396840823	5.29459769916723	5.12557933023404	5.01158995086639	5.17854488590727	5.45483799016222	5.10394270253543	0.0440906104943899	0.884723755420704	0.956700019808816
Merged-chr19-44248304-4	chr19	44248202	44248402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	45014.0	NM_024450	30049.0	Mm.480594	NM_024450	ENSMUSG00000025202	Scd3	4930513N16Rik	stearoyl-coenzyme A desaturase 3	protein-coding	7.80686285231098	8.13260158027901	7.70724608296224	7.55524849955218	7.41676581337773	7.73001410221526	7.57761292028539	7.40197972332407	-0.367444003082757	0.0673355035271048	0.276852692095413
Merged-chr2-130729483-4	chr2	130729367	130729567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029432, intron 28 of 36)	intron (NM_029432, intron 28 of 36)	-31948.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	6.44035706985943	6.24916205493978	6.18040829369684	6.34551026249798	5.9279937140857	5.40550676540297	5.84547541014111	6.37245808586124	-0.57454628965839	0.0400178135409917	0.201853881240111
Merged-chr13-41016281-4	chr13	41016163	41016363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025387)	promoter-TSS (NM_025387)	13.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	7.32728796504455	7.44285023786925	7.38071912515022	7.55909220448338	7.65292546511638	7.37155840623385	7.83479766189717	7.608034597793	0.254086622563452	0.169856818303511	0.462677986683465
Merged-chr7-28741874-4	chr7	28741844	28742044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023637)	promoter-TSS (NM_023637)	-24.0	NM_023637	71984.0	Mm.333725	NM_023637	ENSMUSG00000070699	Sars2	2410015F05Rik|D7Ertd353e|SerRS|SerRSmt	seryl-aminoacyl-tRNA synthetase 2	protein-coding	7.78620009024916	7.97348099065988	7.5266937361148	7.93991528642226	7.9263396066969	8.13349121366576	7.78063734343393	7.85830282678458	0.135336017613424	0.463132958575501	0.744592434631618
Merged-chr5-28036992-1	chr5	28036892	28037092	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-34420.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	5.525249169828	5.21722775010941	5.55345890592766	5.79929798598939	5.71412513471677	5.24955334978524	5.60335743145	5.79356774756574	0.0969577467015618	0.747175372187142	0.900439560306813
Merged-chr3-153968746-4	chr3	153968660	153968860	+	933.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4676.0	NM_001081263	242259.0	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	4.52697211255995	4.85461258006594	4.29843414740254	4.25479647975847	5.005402005298	4.37670270708157	4.69965580608739	4.6449510301402	0.459694390816243	0.249289424412706	0.560328612484111
Merged-chr9-107629274-4	chr9	107629181	107629381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	CT-rich|Low_complexity|Low_complexity	6061.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	7.38285407291425	6.97840404846934	6.69313171661506	6.93250295048579	7.18726065959406	7.18320420108562	7.11318333132616	7.02632257333482	0.156462383912891	0.464098450842384	0.745211298509957
Merged-chr18-39319878-4	chr18	39319770	39319970	+	980.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 20 of 21)	intron (NM_001361073, intron 20 of 21)	167375.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.89904255293902	4.53832259889996	4.70005242313402	4.70009260131712	5.08556834656857	5.21373631709567	5.40766870839881	5.27746168574204	1.04153552242837	0.00104649301671995	0.0139465130943848
Merged-chr2-74578272-3	chr2	74578217	74578417	+	705.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110209, intron 1 of 13)	intron (NM_001110209, intron 1 of 13)	631.0	NM_001110209	69605.0	Mm.156113	NM_027133	ENSMUSG00000009207	Lnpk	2310011O18Rik|4921514L11Rik|9530051D01Rik|AI666268|Lnp|Lnpk1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding	3.38873355885696	3.46082511124755	3.55275357202743	3.44991768201671	3.3114928328771	3.31437759773495	3.80909242137505	3.2659463232978	-0.0637963435830806	0.904332034981367	0.964559678221358
Merged-chr13-41359561-4	chr13	41359464	41359664	+	903.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017464)	promoter-TSS (NM_017464)	-563.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	4.07824208883421	4.35310184395405	4.51776780539866	4.56109788464366	4.1715826589354	3.91076894252885	4.25387803527493	4.55126622492131	-0.378050808587221	0.374672442421104	0.677891254741963
Merged-chr11-118153169-4	chr11	118153088	118153288	+	994.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-23969.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	6.72297302133645	6.71114865639138	6.98314557849224	6.84909458436009	5.41670615138202	5.50983927186129	5.92364617310505	5.39046367831965	-1.93156721986221	2.91684082739716e-14	4.22846870169658e-12
Merged-chr19-31756272-3	chr19	31756198	31756398	+	697.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013833, intron 1 of 17)	intron (NM_001013833, intron 1 of 17)	8735.0	NM_001013833	19091.0	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding	3.61041138397639	3.24265007008269	3.19715124645305	3.2347916442063	3.18990041499808	3.10964427556688	3.12416983202044	3.41895894582684	-0.408955853469171	0.465938206022157	0.74626088086293
Merged-chr1-136569404-4	chr1	136569315	136569515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55486.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	5.93013735071717	5.38258549336676	6.18360849532834	6.31116136821395	6.21929081026579	5.93548388648781	6.07363021235019	6.38904327996107	0.243950323718536	0.410940092758861	0.706273206869081
Merged-chr13-52156040-4	chr13	52155952	52156152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59311.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	5.71121906908611	5.51374033853908	5.55100867863188	6.0962134776949	5.91034135980571	5.54606222236163	5.95286877434162	5.6827144289739	0.045092163474693	0.877195623405754	0.95400787309617
Merged-chr1-150167371-4	chr1	150167274	150167474	+	893.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-2426.0	NR_110420	102639566.0	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	4.018852847504	4.26109006769526	4.67366487115141	4.34820131700345	4.41753650582504	4.49526428196841	4.30274869804433	4.52631099114477	0.213684787553334	0.589689036689375	0.820539533210917
Merged-chr14-54742590-3	chr14	54742480	54742680	+	968.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	-30406.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	4.87652322216779	4.14492890509561	5.51276921392177	5.95587910028816	3.88274259285178	4.05593128323035	3.96934461832202	4.27805837675546	-2.73676475848817	2.0624682177785e-07	8.2987238707324e-06
Merged-chr11-97661629-6	chr11	97661553	97661753	+	940.255554	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1759.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	4.24975110979077	4.37754602720719	4.72146564001623	3.69884128717708	4.63974234610193	4.55898681436361	4.27765012078938	4.19955353623173	0.302125926319004	0.515125914445369	0.777385138962536
Merged-chr11-32560222-4	chr11	32560134	32560334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	26968.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	5.74963551933501	5.497831417364	5.96035886325485	6.22025404105198	5.47346240724228	4.86401317753505	5.00985265622205	5.18074356229135	-1.2584677077618	0.000161636272537382	0.00304367942934876
Merged-chr11-107478717-3	chr11	107478614	107478814	+	918.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025894)	promoter-TSS (NM_025894)	-814.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	4.08767600554916	4.10113407469464	3.94629216167866	3.42395591210268	3.88498502791636	4.46235295863382	3.97764210080042	3.60449622194266	0.277051765738092	0.593953409231939	0.823228952366238
Merged-chr7-83653958-6	chr7	83653841	83654041	+	985.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 13 of 18)	intron (NM_001360088, intron 13 of 18)	1554.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	4.46244577541917	4.43772326456636	4.46317097368589	3.80479626953093	4.43324052792665	4.51103181059329	4.36091368845619	4.19656761168849	0.178402977212685	0.678657620220988	0.8681208945003
Merged-chr12-85701037-4	chr12	85700901	85701101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	14281.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	6.23464732390776	6.34785740115087	6.570911266164	6.57179072860218	5.56948683500333	5.73015483225026	5.58085559260805	5.71946145793084	-1.26218166051939	2.79233227989064e-07	1.09146303871684e-05
Merged-chr7-25220673-4	chr7	25220583	25220783	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207677)	promoter-TSS (NM_207677)	-742.0	NM_175436	210172.0	Mm.129371	NM_175436	ENSMUSG00000046541	Zfp526	D030024H03Rik|Znf526	zinc finger protein 526	protein-coding	5.50505483684603	5.49466560429781	4.99023640074313	5.13633915151097	5.53328573918473	5.59757366860924	5.39668451472144	5.47536355445205	0.372762022650968	0.207167089049913	0.511175781726586
Merged-chr15-77752718-4	chr15	77752615	77752815	+	829.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357895, intron 3 of 3)	intron (NM_001357895, intron 3 of 3)	2558.0	NM_001357896	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	3.6246482435058	3.72951133454142	3.73488441775702	3.70596024077044	3.90812291605677	3.74221229282633	3.81986811834485	3.92739399429079	0.453267085041506	0.307556512827821	0.619876685541157
Merged-chr7-107275045-3	chr7	107274958	107275158	+	726.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID2|SINE|ID	65613.0	NM_029660	76572.0	Mm.128134	NM_029660	ENSMUSG00000073894	Rbmxl2	1700012H05Rik|Hnrnpg-t	RNA binding motif protein, X-linked-like 2	protein-coding	3.45337297454909	3.21929779058181	3.76656062546504	3.73621685348385	2.71162960277071	2.92634067912836	3.09653686030869	2.96733076274458	-2.81659097488927	5.95643049333432e-05	0.0013130156893312
Merged-chr11-74837798-4	chr11	74837616	74837816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010813, exon 4 of 6)	exon (NM_010813, exon 4 of 6)	6792.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	7.29910993035791	7.52165711200502	7.2793032285197	7.03238276928147	7.04134039315999	7.42407144444706	7.36392557947393	7.40513703162672	0.0319286535451295	0.876770022802794	0.953778173570731
Merged-chr19-42144281-3	chr19	42144173	42144373	+	992.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3116.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	5.24530391722912	5.61047179161633	4.83648149448081	4.35847405334643	3.8631695861128	4.31267480816208	4.10279410629574	4.33492574852982	-2.07798195205479	1.13981745002326e-05	0.000309897120990091
Merged-chr16-16573365-4	chr16	16573265	16573465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	-13146.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	5.70961991534428	5.79693694026795	5.54625804089233	5.85384947132387	5.92147200752558	5.60306125536407	6.05444942338179	5.94030349354867	0.244137883548625	0.348722155274505	0.656400500665871
Merged-chr2-167932289-4	chr2	167932209	167932409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011201)	promoter-TSS (NM_011201)	-18.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	8.07395376559133	8.13835491440695	8.00947786050068	7.87959186498417	7.91340950923928	8.21348083559773	8.08694308459635	7.9768215345221	0.0316903277175989	0.849796778660829	0.943287725008123
Merged-chr13-40900176-4	chr13	40900078	40900278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008105, intron 1 of 2)	intron (NM_008105, intron 1 of 2)	13420.0	NM_008105	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	6.14085171892914	6.3804585477495	6.57978106919478	6.98613682959524	6.33543197024173	6.25376980134788	6.53069696784198	6.37518777544818	-0.298083791598045	0.2571198429589	0.568865264887839
Merged-chr8-71988716-3	chr8	71988648	71988848	+	726.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024444, intron 12 of 12)	intron (NM_024444, intron 12 of 12)	20878.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	3.5204888058723	3.34123943644565	3.40899722130305	3.39895369303787	3.29531749691765	3.79165322282688	3.39619102711127	3.62182707091951	0.388730345842951	0.449397341118126	0.734605303680119
Merged-chr1-171501634-3	chr1	171501543	171501743	+	865.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1835.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	3.40788142680486	3.57039615912256	3.29709443548378	3.12777790042568	3.40613746185941	3.28675762681738	3.1648557958377	3.2953777082187	-0.211007863907013	0.700374430167291	0.879134605729927
Merged-chr8-125337033-3	chr8	125336932	125337132	+	945.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	155801.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	3.27138143880164	3.23545172438566	3.27175086014135	3.03745590493906	4.01271459876549	4.04283198299489	4.21927422980352	4.2382878265428	3.00985899477626	9.71458096502518e-10	6.25202674963406e-08
Merged-chr11-70983005-4	chr11	70982901	70983101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007573)	promoter-TSS (NM_007573)	25.0	NM_007573	12261.0	Mm.30049	NM_007573	ENSMUSG00000018446	C1qbp	AA407365|AA986492|D11Wsu182e|HABP1|P32|gC1qBP	complement component 1, q subcomponent binding protein	protein-coding	6.65088326506882	6.89367200482985	6.32878056034587	6.38667510630817	6.58258290119846	6.88614658084476	6.50891581135041	6.36242509699863	0.0235714924257127	0.922855327381007	0.971413012934631
Merged-chr13-17838643-3	chr13	17838544	17838744	+	911.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33547.0	NM_027118	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	3.87680902107838	3.50658725590291	3.22891660022955	3.95228498571659	3.49101243304264	3.47574855042244	3.63033778391392	3.42194798846856	-0.559184931985141	0.306644757118045	0.619051127874117
Merged-chr11-69581532-4	chr11	69581450	69581650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127233, intron 1 of 10)	CpG	1191.0	NM_001127233	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	6.7068162246268	6.80382375010845	6.53598129672029	6.46659204351782	6.70198092434772	6.80888019485694	6.50261838058123	6.73209495736822	0.0910941889939723	0.669386678375242	0.863479905771059
Merged-chr7-80788541-4	chr7	80788443	80788643	+	844.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	14788.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	4.24365299718978	3.94828332524034	3.81089129880001	4.00514559440481	4.10115033407403	4.19353012961944	3.90467640267825	4.20014950836548	0.248244917858088	0.558862640407834	0.803410899795795
Merged-chr6-53045690-4	chr6	53045576	53045776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	22948.0	NM_173406	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	5.27909864608345	5.23010831023332	5.53796567691976	5.75086182962878	5.18900091902884	5.17744864338921	5.56043288094302	5.50788982935102	-0.206473677371655	0.506019894598738	0.771805771672231
Merged-chr7-35064486-4	chr7	35064393	35064593	+	993.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-7927.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	5.34062946256917	5.49487873145245	5.4503808689853	5.29557338909021	4.7273845189794	5.19693347478665	5.03142315458631	5.1872122859859	-0.668960491256536	0.0314073410051563	0.172609573873879
Merged-chr11-78535512-4	chr11	78535422	78535622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018854)	promoter-TSS (NM_018854)	738.0	NM_001159392	21927.0	Mm.386774	NM_009395	ENSMUSG00000017615	Tnfaip1	Bacurd2|Edp-1|Edp1|Tnfip1	tumor necrosis factor, alpha-induced protein 1 (endothelial)	protein-coding	6.20271386078908	6.29929585798105	6.16292475747717	6.3606361497289	6.49282739179767	6.18670472354015	6.2114807470307	6.67809200947017	0.218751001745998	0.351862063121176	0.659108597595279
Merged-chr19-7218147-4	chr19	7218058	7218258	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007750)	promoter-TSS (NM_007750)	-542.0	NM_007750	12868.0	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	5.08670206531007	5.19036506285987	4.95263821425214	4.91338847560959	5.08314240053541	5.0168625982796	4.73923222563084	5.08408045313956	-0.0797134360980323	0.803042264950725	0.923982127240574
Merged-chr9-22389288-4	chr9	22389202	22389402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028390)	promoter-TSS (NM_028390)	-96.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	6.80671991695944	6.751053812784	6.95239726481206	6.7357260579379	6.96194468230356	6.55983132619536	6.75939783271247	6.83060711107834	-0.0172433904696268	0.933278762209458	0.975962286829063
Merged-chr2-132607882-4	chr2	132607773	132607973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 2 of 3)	intron (NR_033469, intron 2 of 3)	9677.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	5.82671671435959	6.1474960711227	5.265588785653	5.17856385833102	6.09529661916592	5.95613633181642	5.54896590373985	5.3955613320424	0.200288508811556	0.571071793086086	0.810348982482694
Merged-chr4-62283086-4	chr4	62282981	62283181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3348.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	6.76576162352657	7.18353547490704	6.85152239573994	6.47423209807872	7.15455017058215	7.04157987977218	6.71789490895342	6.59070520684076	0.0924864610285439	0.710087547120906	0.883989795945789
Merged-chr7-30613670-3	chr7	30613535	30613735	+	935.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026815)	promoter-TSS (NM_026815)	-901.0	NM_026815	109637.0	Mm.25471	NM_026815	ENSMUSG00000006313	Upk1a	1110031P12Rik|AU019298|C87192|Tspan21|Upk1	uroplakin 1A	protein-coding	3.10382829707175	2.77358806562632	2.91567241371155	3.10844785971715	3.04837192658104	3.27330757387638	3.09254079280427	3.21439782812388	0.666618717625209	0.258900931789295	0.57067723968259
Merged-chr8-94012721-4	chr8	94012627	94012827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011787)	promoter-TSS (NM_011787)	-87.0	NM_011787	23802.0	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	6.52583006551493	6.65061275560504	6.40981025290163	6.51102703740965	6.45144823802631	6.1041855098858	6.54044209710087	6.25652256688691	-0.252914236707679	0.259606667493041	0.571436527367633
Merged-chr11-70563880-3	chr11	70563768	70563968	+	983.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	intron (NM_016713, intron 1 of 30)	987.0	NM_016713	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	4.67110085109769	4.36376293831007	4.67189136935124	4.52786526702954	3.93049302061346	4.14030357983475	4.42694361607622	4.2698415306337	-0.875201460001255	0.0298399362724431	0.166635963024399
Merged-chr16-84702926-4	chr16	84702830	84703030	+	924.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10093.0	NR_132106	100653389.0	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	4.69905189883037	4.81995552838716	4.81596679874303	4.39493551230877	5.1905376784083	4.95268859073504	5.05670921871549	4.61320829325846	0.61451457381492	0.0848765734210423	0.317004230056502
Merged-chr11-69579377-4	chr11	69579279	69579479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144824)	promoter-TSS (NM_144824)	-55.0	NM_144824	216853.0	Mm.31586	NM_144824	ENSMUSG00000041346	Wrap53	BC021790|Wdr79	WD repeat containing, antisense to Trp53	protein-coding	7.03929128865972	7.24654786279328	6.72520133717937	6.61536629969948	6.93235869146637	6.82549037434629	6.58226104063596	6.49191169459104	-0.279998995424665	0.246355817030369	0.55762669839908
Merged-chr17-34420175-3	chr17	34420077	34420277	+	843.5833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001177, intron 5 of 19)	intron (NM_001001177, intron 5 of 19)	21357.0	NM_001163855	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	2.96237623582159	3.38274074665303	3.03807489793901	2.74428798359991	3.60413063012188	3.59545063512657	3.65537826443062	3.67045288725148	2.16026690490707	0.000214772972539056	0.00386141081393217
Merged-chr4-133570185-3	chr4	133570125	133570325	+	857.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER92B|LTR|ERV1	-4520.0	NM_172876	242691.0	Mm.40110	NM_172876	ENSMUSG00000028850	Gpatch3	D930035B09Rik|Gpatc3	G patch domain containing 3	protein-coding	3.80554964002826	3.6691775704691	3.58462230561957	3.17855534154301	3.05938112204355	3.16691615330355	3.11402624017224	3.1895704592427	-1.65777884476278	0.00543198534853688	0.0505071913646342
Merged-chr4-150030789-4	chr4	150030604	150030804	+	964.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21681.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	4.50131859029209	4.07962250775583	4.29527921424991	4.58560321747462	4.16709049925622	4.27893952199763	4.3621753122891	4.4205043101245	-0.205017164683101	0.609673689143386	0.831167440112817
Merged-chr10-80245067-4	chr10	80244947	80245147	+	926.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023431)	TTS (NM_023431)	-4405.0	NM_029272	75406.0	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	4.28413987654095	4.70065976362555	4.56334151882275	4.48274187428798	4.82944874827486	4.60839765360382	4.90053272850088	4.78920426516699	0.584679820384106	0.0958344077061888	0.339069356104922
Merged-chr5-64377181-2	chr5	64377081	64377281	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90761.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	2.73382135259506	2.65633380905383	2.66386586078778	2.66761944859436	3.00273306365957	3.03496962272211	2.85404869537255	3.08943146852789	1.44466407909939	0.0175465729747493	0.117129092916598
Merged-chr1-60974958-4	chr1	60974862	60975062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2952.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	5.96130588113322	5.97511786137686	5.98419729096163	6.02063418616754	5.66918754827421	6.06986103681951	5.95366457656329	6.02246912885369	-0.099970467880605	0.684887703530288	0.870948883382745
Merged-chr7-46547768-3	chr7	46547657	46547857	+	855.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013789, intron 9 of 10)	Tigger14a|DNA|TcMar-Tigger	92050.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	3.30498232338125	3.1821666697039	3.19432730203345	3.10161269692103	3.1950810475109	3.24544083497699	3.23839906665502	3.00624498140264	-0.0622319594119476	0.909831050828673	0.966536787411521
Merged-chr10-44776334-3	chr10	44776195	44776395	+	698.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-290919.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	3.079162658058	2.9809241469339	3.19460255889586	3.42814766117499	3.08122932009669	2.91870460312112	3.06878925129159	3.13674247821161	-0.550733398035781	0.355262667379712	0.661813745489821
Merged-chr5-65137945-4	chr5	65137838	65138038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359401, intron 1 of 5)	intron (NM_001359401, intron 1 of 5)	6707.0	NM_175174	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	5.65976531362375	5.78123373363791	5.73867857271466	6.10238605038616	5.65596699062759	5.88886593026595	5.60536654474952	6.04529337938964	-0.0748920716316552	0.785705203071834	0.916621459911333
Merged-chr5-36830125-4	chr5	36830007	36830207	+	911.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008550, intron 1 of 18)	intron (NM_008550, intron 1 of 18)	542.0	NM_008550	17160.0	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	4.32160736378952	4.47603196170958	4.53596192590836	4.46941218356136	4.25587137547974	4.35345020640466	4.79291321634643	4.45186975749705	0.046504243124386	0.903125545265819	0.964166361786269
Merged-chr11-120150526-4	chr11	120150427	120150627	+	973.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361699, intron 1 of 16)	intron (NM_001361699, intron 1 of 16)	824.0	NM_001361698	72055.0	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	4.64200437499305	5.24865657678059	4.72862336413708	4.66369905604705	5.32719244308852	5.02304814600016	4.96686935042263	4.9877748075166	0.490126382453244	0.16229828751156	0.451470603673022
Merged-chr13-37356762-4	chr13	37356673	37356873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	11428.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.93105999358235	6.01557224637467	5.65771711234157	6.12206743007497	5.96870894056989	6.10689016598828	5.78520346750524	5.90526967266381	-0.0202842873184242	0.936705208599204	0.977098357477254
Merged-chr11-70453430-5	chr11	70453353	70453553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_151497)	TTS (NR_151497)	1522.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	6.72123553147041	6.4573095142217	6.77719760535339	6.33878502633045	6.53892638032917	6.70168555535903	6.390494144326	6.26805136153957	-0.126666487553701	0.588643318426013	0.819813781839343
Merged-chr7-45062555-7	chr7	45062419	45062619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022999)	promoter-TSS (NM_022999)	90.0	NM_025533	66394.0	Mm.272139	NM_025533	ENSMUSG00000003421	Nosip	2310061K06Rik|CGI-25	nitric oxide synthase interacting protein	protein-coding	5.62942786293255	5.77037738983642	5.32779859648761	5.11898256596339	5.54128446087171	5.40847703958051	5.10176221426073	5.62641253911747	-0.0657860436610839	0.837042260141994	0.938145671742126
Merged-chr17-29498257-4	chr17	29498168	29498368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7223.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	6.63152783079512	6.69882575590128	6.38463464554829	6.31604259047027	6.60726239321614	6.68244709132086	6.52183452392881	6.28530444851752	0.0372510447764013	0.870293960447425	0.951327689211365
Merged-chr17-56337425-4	chr17	56337320	56337520	+	778.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172132, intron 1 of 22)	intron (NM_172132, intron 1 of 22)	11370.0	NM_001357909	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	4.07088952830759	4.10198799166613	3.92297182872165	4.00244109934907	4.39976706695714	3.93429915898774	3.79924289020375	4.20187152590497	0.240911829944439	0.584157782036259	0.817552638829506
Merged-chr6-87590736-4	chr6	87590626	87590826	+	985.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021381)	promoter-TSS (NM_021381)	17.0	NM_001355655	58182.0	Mm.333226	NM_021381	ENSMUSG00000049409	Prokr1	EG-VEGFR1|Gpr73|Pk-r1|Pkr1	prokineticin receptor 1	protein-coding	4.48199010799905	4.73298974203346	4.83003631872688	4.56430077756634	4.63910948742876	4.7001714601889	4.62725112523883	4.64583190039446	-0.00116991022146954	0.99730673824847	0.998908860902246
Merged-chr15-81361032-8	chr15	81360907	81361107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011399)	promoter-TSS (NM_011399)	-242.0	NM_011399	20524.0	Mm.222536	NM_011399	ENSMUSG00000022404	Slc25a17	34kDa|47kDa|PMP34|Pmp47	solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	protein-coding	6.26441094465856	6.30292362105713	6.26552008699519	6.05256631171402	6.05805792146401	6.4031130175373	6.09819385554147	5.94955503681534	-0.126114823173326	0.599369365426318	0.826316125212269
Merged-chr1-118389383-4	chr1	118389297	118389497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001359346, exon 1 of 38)	5' UTR (NM_001359346, exon 1 of 38)	339.0	NM_001359334	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	8.06790612216212	7.98107587668141	8.03016010034318	8.19319629709003	8.09091813987232	7.82392287054693	7.95156664278664	7.94280677329925	-0.147810869416341	0.366138964752286	0.670717659360279
Merged-chr3-57651712-4	chr3	57651604	57651804	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175095)	promoter-TSS (NM_175095)	-20.0	NM_175095	52245.0	Mm.21901	NM_175095	ENSMUSG00000036513	Commd2	1190017G07Rik|AI047739|D3Ertd176e|HSPC042	COMM domain containing 2	protein-coding	5.17065075990726	5.69278810594818	5.53661078865389	5.65762275758363	5.39183938914653	5.41713702387106	5.14650784622151	5.65828187759408	-0.219405621226801	0.464293474281791	0.745330293322138
Merged-chr12-85710791-4	chr12	85710688	85710888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24068.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	8.57676219847287	8.77470731332238	8.33586552648162	8.2447415548158	8.33142640403134	8.36303190649798	8.01042313328127	8.00857782301084	-0.387872532269715	0.0433474479234577	0.211779642835881
Merged-chr1-178405682-4	chr1	178405583	178405783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026626)	promoter-TSS (NM_026626)	-335.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	6.75666200056549	6.46565269026605	6.63944655044796	6.74639923410412	6.46838384318001	6.54104979805103	7.04399347991717	6.76707757582076	0.086103675206645	0.70696520970477	0.882312931718287
Merged-chr10-128345067-4	chr10	128344950	128345150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026444, intron 1 of 10)	intron (NM_026444, intron 1 of 10)	7323.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	6.21134775374537	5.91738267005554	5.82641129275947	6.37229611812662	6.02079137727721	5.78825501795366	5.79686649143781	6.31404890673979	-0.178416540072873	0.515994136760307	0.77793651811945
Merged-chr11-79905588-3	chr11	79905475	79905675	+	935.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	56812.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	3.61414499713461	3.57071124015969	3.98395553753237	3.90969440493928	3.15274240979464	3.4301172030667	3.54600112434276	3.61260170003018	-1.12862765469556	0.034047430044735	0.182136486864088
Merged-chr10-67081813-3	chr10	67081703	67081903	+	813.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 1 of 7)	intron (NM_178606, intron 1 of 7)	15185.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	4.25690593809122	4.20245528810663	3.7441002273155	4.2831481529756	4.10716276278285	3.53900708000203	3.78536741148844	3.6836614478052	-0.918932768990015	0.0657662444329108	0.273029085810609
Merged-chr8-115709583-4	chr8	115709476	115709676	+	891.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2682.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	4.60150860641133	4.25780451607781	4.16431585982579	4.49365103773111	4.36385892208308	4.69625930706637	4.54313730563649	4.39904517800841	0.237203247744092	0.537067052902656	0.790923655782789
Merged-chr2-24405813-2	chr2	24405713	24405913	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177611, exon 16 of 17)	exon (NM_177611, exon 16 of 17)	19197.0	NM_001355232	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	2.94307200551221	3.10805394513203	3.53577067043733	3.26613991068315	3.32756283351586	3.26201350686995	3.47223736269026	3.38266529673905	0.469885188656561	0.405249288545676	0.702208404574409
Merged-chr2-35349433-4	chr2	35349345	35349545	+	802.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12436.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	4.06249053675268	3.81419588217673	3.71333437387981	3.83460125662257	3.84092420309113	3.99609511849316	4.00085191051084	3.97008431397474	0.25177716672511	0.562796281101644	0.805843304148658
Merged-chr6-72151949-2	chr6	72151849	72152049	+	962.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 6 of 6)	intron (NM_001035228, intron 6 of 6)	-28752.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	2.90346767560381	2.80456807696339	2.83867185199579	2.55767569646916	2.65252651186546	3.19659078205529	2.9543259262643	3.18653050087416	1.03431808917335	0.11125131316584	0.368537125696065
Merged-chr1-138973755-4	chr1	138973708	138973908	+	908.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	-3849.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	3.36325075455997	3.42336029535996	3.36370141251972	3.18472646477969	3.56699678992972	3.16220505960013	3.23661957489976	3.36187881709208	0.0752785409721701	0.889186988221736	0.958467465769678
Merged-chr2-59612515-3	chr2	59612489	59612689	+	903.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198294, intron 1 of 26)	CpG	547.0	NM_198294	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	3.80094938816379	3.97606499458821	4.23866849092346	3.40980848964905	3.45934785168019	3.97615700209438	3.93120645125349	3.57301834548531	-0.388704068406301	0.466130752060202	0.74629927630325
Merged-chr2-6451410-4	chr2	6451298	6451498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98662.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	5.29354109080571	5.89212650705819	5.64947152719147	5.87468643088459	5.92584230245415	5.29503095461927	5.87539201161828	5.45063563955022	-0.0571032074202915	0.854090772679406	0.945008271417317
Merged-chr4-108302359-4	chr4	108302283	108302483	+	801.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1293.0	NM_001033634	414872.0	Mm.426241	NM_001033634	ENSMUSG00000034636	Zyg11b	1110046I03Rik|2810482G21Rik|D4Mgi23|Gm431|mKIAA1730	zyg-ll family member B, cell cycle regulator	protein-coding	3.09811339517295	3.2397756028037	3.57100696146385	3.30001306089557	3.4333914965768	3.6887105954276	3.34319646187013	3.51842805925182	0.641494056668187	0.226445758215212	0.5350611679724
Merged-chr19-46339374-4	chr19	46339264	46339464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164295)	promoter-TSS (NM_001164295)	-704.0	NM_001164292	67116.0	Mm.218848	NM_024192	ENSMUSG00000036748	Cuedc2	3010002G01Rik	CUE domain containing 2	protein-coding	6.19303788841155	6.35797995668342	5.99844043201313	6.04136623760183	6.67662361034439	6.22238911758089	6.49495073724526	6.39374347771987	0.47534002267767	0.0443125924631124	0.21472794113475
Merged-chr1-40116616-4	chr1	40116526	40116726	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010555, intron 5 of 8)	intron (NM_010555, intron 5 of 8)	30533.0	NM_001360800	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	5.1201805925269	5.2073795097139	4.8683257655319	5.14563445309133	5.07859814390414	5.38784862568593	5.21972543261826	5.08439458032171	0.175449315199988	0.566492093793226	0.807900514541786
Merged-chr7-15967467-4	chr7	15967357	15967557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153068)	promoter-TSS (NM_153068)	78.0	NM_153068	259300.0	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	4.77681009585894	5.01508977577413	5.20701960091833	4.40149848612038	4.79075549453544	5.06431671726827	4.8667627257442	4.99054507254392	0.119806353688137	0.746020167524518	0.899894412693663
Merged-chr6-83441709-4	chr6	83441619	83441819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183138)	promoter-TSS (NM_183138)	-36.0	NR_028382	320775.0	Mm.434334	NR_028382	ENSMUSG00000051844	B230319C09Rik	-	RIKEN cDNA B230319C09 gene	ncRNA	6.202849328917	6.28000789493909	6.14561479749085	6.54172969988366	6.03660736074946	5.95737438083806	5.85101006379978	5.85194923788668	-0.599575746201917	0.014088431350865	0.100430691549646
Merged-chr11-72467198-4	chr11	72467120	72467320	+	956.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153060, intron 2 of 12)	MIRc|SINE|MIR	7807.0	NM_001276383	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	5.01393066144115	5.16175357849533	5.34105454953423	4.82825199376441	4.71979599606185	4.75737360337919	5.08725088031144	5.04474452946898	-0.351348648196367	0.302060781890752	0.614370464992115
Merged-chr3-108086744-4	chr3	108086592	108086792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028779)	promoter-TSS (NM_028779)	-26.0	NM_001289719	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	5.71262590768045	5.94450504557996	5.8618975096241	5.75582720449209	6.07036498952462	6.14741877451855	5.96390909107164	5.54198322823413	0.217081687414506	0.409850503637673	0.70525942551561
Merged-chr5-105012720-4	chr5	105012613	105012813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR10_RN|LTR|ERVK	-29996.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	6.50050388804044	6.19383379633581	6.41799650405179	6.51561855359619	6.45084611835057	6.42835830618703	6.40228639935175	6.32384455335852	-0.0212321333660629	0.922665882387961	0.971371614295115
Merged-chr4-132806996-4	chr4	132806900	132807100	+	922.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-10636.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	3.9641208174436	4.00999473924998	4.12638832040161	4.35358626713842	4.72385584607016	4.14664642614628	4.20567986716344	4.84174778213952	0.90390681709112	0.0405450997730177	0.203523248007308
Merged-chr12-70010548-4	chr12	70010441	70010641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081453)	TTS (NM_001081453)	-23539.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	5.22984446503208	4.90170611602769	5.19848818844617	5.60553255388176	5.44538953956049	5.34092514935055	5.40872484421837	5.2585537164632	0.15514996748104	0.628130315254676	0.841427212108636
Merged-chr5-16554540-3	chr5	16554428	16554628	+	866.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289458, intron 2 of 18)	intron (NM_001289458, intron 2 of 18)	627.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	3.62425769007001	3.44322609164931	3.67671950504221	3.72040098616232	3.39230234181393	3.74217707940076	3.6614911751979	3.67458986435458	-0.0270725974047933	0.955859980549085	0.984313078570438
Merged-chr14-103099722-4	chr14	103099612	103099812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347601)	promoter-TSS (NM_001347601)	-146.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	8.28227261240692	8.79693006653996	8.3998131510098	8.45819104212643	8.55738308546709	8.70814101400796	8.59982123202715	7.82143335698408	-0.0428723858200271	0.846566614717025	0.941954402290774
Merged-chr2-116972289-4	chr2	116972188	116972388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72136.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	7.6110913284204	8.10131957120729	7.64687232687205	7.36405365716554	7.71998206210785	7.87392873962621	7.65119960148107	7.5537018132087	-0.000912039824549219	0.996574014590745	0.998649443287934
Merged-chr14-120137926-4	chr14	120137839	120138039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95504.0	NM_001001490	239283.0	Mm.138520	NM_001001490	ENSMUSG00000044819	Oxgr1	Cysltr3|Gm299|Gpr80|Gpr99|P2Y15	oxoglutarate (alpha-ketoglutarate) receptor 1	protein-coding	8.04389824666042	8.13729177755282	8.31928062730442	8.21260436927609	7.97806508424703	8.1541852723095	8.13328215946308	8.09207036206466	-0.122757843233403	0.440579220633323	0.727944976505159
Merged-chr2-131436343-4	chr2	131436254	131436454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-55508.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	6.68759825108764	6.98618249400147	6.20639310881409	6.17001251784506	6.98441526980328	7.15456676663474	6.53029331219006	6.42080867318927	0.365201671722796	0.204492014704725	0.507782437802491
Merged-chr7-140127208-3	chr7	140127139	140127339	+	881.357178	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153783, intron 2 of 6)	intron (NM_153783, intron 2 of 6)	1554.0	NM_153783	212503.0	Mm.486735	NM_153783	ENSMUSG00000025464	Paox	2410012F02Rik|AI118225|Pao	polyamine oxidase (exo-N4-amino)	protein-coding	3.58169333116422	3.21326298010835	3.21619826876153	3.34613650567724	3.35777863491513	3.19886350315181	3.07969311208778	3.33018948077678	-0.349543329158907	0.52624645598677	0.783568247232079
Merged-chr4-33251067-4	chr4	33250974	33251174	+	744.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2287.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	3.62903343492222	3.39479017296541	3.68217714258159	3.48839018556094	3.49130311254078	3.51115514715148	3.71667134334669	4.07472569754867	0.524614854556022	0.297674337733651	0.609906784270108
Merged-chr1-38012781-3	chr1	38012696	38012896	+	849.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 1 of 23)	L1MD2|LINE|L1	14786.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	3.40085582867015	3.50203092693629	3.34410381734403	3.03455350985537	3.55613467360591	3.39794435943424	3.27256335672054	3.55697071984308	0.463664059195639	0.391636359337625	0.691351450352092
Merged-chr7-12803620-4	chr7	12803514	12803714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026046)	TTS (NM_026046)	15246.0	NM_026046	67230.0	Mm.333574	NM_026046	ENSMUSG00000057894	Zfp329	2810439M05Rik|4632409L22Rik|ZNF329	zinc finger protein 329	protein-coding	5.7421788008793	6.06980127122537	6.38902584364014	6.41181833624349	5.96792549048573	6.23053348754397	5.91359219491426	5.96263006768813	-0.26750901972827	0.315920832066019	0.62781575496774
Merged-chr19-53807498-2	chr19	53807398	53807598	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 1 of 13)	MLT1D|LTR|ERVL-MaLR	-84733.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	2.41776875654135	2.50572747962595	2.49710326946333	2.6930676729029	2.76330364737114	2.94634876752412	2.88290383735629	3.10295512540637	1.82216802133205	0.0120954143653134	0.090472835131215
Merged-chr2-29624476-4	chr2	29624364	29624564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	4744.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	5.98201853212643	5.99031799867582	5.27661493644226	5.9744411872624	5.99468843889982	6.22118552370598	5.99490889036854	6.19735454840151	0.398077273028086	0.150226599858113	0.432826518975942
Merged-chr17-27565308-4	chr17	27565225	27565425	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002895, intron 1 of 4)	intron (NM_001002895, intron 1 of 4)	402.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	4.77590485441476	4.49915501913421	4.58372853147407	4.63775587996065	4.84693609995858	4.67339891186336	4.88821311978168	4.53852313158751	0.262307249266789	0.448902484160145	0.73411488406806
Merged-chr1-88424805-3	chr1	88424702	88424902	+	738.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029269, intron 7 of 7)	intron (NM_029269, intron 7 of 7)	17792.0	NM_029269	75396.0	Mm.173058	NM_029269	ENSMUSG00000026295	Spp2	0610038O04Rik|pp-24|spp24	secreted phosphoprotein 2	protein-coding	4.06535189641321	3.69511942031012	3.46723007471601	3.74146218327643	3.61648305572049	3.64602895540885	3.9655193882361	3.58638764073237	-0.138857221295874	0.778867824476309	0.913802853320572
Merged-chr8-36185373-3	chr8	36185293	36185493	+	916.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29383.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	4.16124301737405	3.86156320641314	4.41869248320385	4.49085860960606	3.41443434757171	3.45884328392356	3.59813795590313	3.41082778672935	-2.47373558436231	3.39113058083166e-06	0.000104809936436395
Merged-chr2-145371008-4	chr2	145370911	145371111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053195, intron 2 of 16)	intron (NM_053195, intron 2 of 16)	128400.0	NM_053195	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	5.12831870977779	5.61725094311494	5.38417324319212	5.62654656964181	5.28317360072737	5.0800999265473	5.46705959863066	5.35123404444192	-0.29420386033294	0.330293679751956	0.641735330450783
Merged-chr7-97944695-4	chr7	97944593	97944793	+	696.737488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177696, intron 1 of 17)	L1_Mur3|LINE|L1	24735.0	NM_177696	233537.0	Mm.375772	NM_177696	ENSMUSG00000035582	Gdpd4	4921513O04	glycerophosphodiester phosphodiesterase domain containing 4	protein-coding	4.0733028491514	3.78151164202877	3.42528915753434	3.71191493669157	4.04923505755738	3.90989416068613	4.09652248556408	3.78709289516359	0.575506089319131	0.22323880118772	0.531257593772677
Merged-chr11-100626375-4	chr11	100626282	100626482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028024, exon 4 of 4)	3' UTR (NM_028024, exon 4 of 4)	3427.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	4.18616468096125	4.17252126749374	4.91403016212142	4.76586176071809	5.33656139166757	4.13524026464181	4.9832497373552	4.91060710190554	0.734381476756895	0.121163558024211	0.385409165509467
Merged-chr13-107025831-4	chr13	107025727	107025927	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015471, intron 1 of 3)	RMER6A|LTR|ERVK	3257.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	4.60356738850184	4.46479731831663	4.3671909468351	4.30851768899109	4.3549883596038	4.35710465231652	4.58224816645999	4.01865987071388	-0.208026348802414	0.598962901239552	0.826146116839364
Merged-chr19-21713629-7	chr19	21713524	21713724	+	984.119019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	60315.0	NM_146096	226016.0	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	5.22728648211815	4.77465662961262	5.25822925208907	5.12829275241658	5.2830196596492	5.09750132732931	5.2612299898317	5.28389328570647	0.241533992592476	0.432201854772062	0.722288125019266
Merged-chr10-71239750-4	chr10	71239628	71239828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1684.0	NM_009360	21780.0	Mm.229292	NM_009360	ENSMUSG00000003923	Tfam	AI661103|Hmgts|mtTFA|tsHMG	transcription factor A, mitochondrial	protein-coding	5.10657805469196	5.2235551570351	5.13839129945472	4.9942104754777	5.30688692968679	4.55390696058936	4.98542023211185	4.56785267775654	-0.392414089312441	0.284059880244561	0.596035490823689
Merged-chr13-41819666-4	chr13	41819553	41819753	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145875, intron 2 of 6)	intron (NM_001145875, intron 2 of 6)	27835.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	5.48688106490849	4.59309995387802	5.24960543917158	5.36458024471032	4.91675795418891	4.85089085850486	5.06958101745446	5.15531490079924	-0.409985685984973	0.25016490809609	0.561249063980067
Merged-chr17-6827970-4	chr17	6827901	6828101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-45221.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	6.7979897107405	7.12582929895308	7.10685695461445	6.8262215344514	6.92001186548961	7.24849969590451	6.87533132201179	6.73491876003095	-0.017526124002694	0.934935085932122	0.976360340990369
Merged-chr8-13840320-4	chr8	13840216	13840416	+	957.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2227.0	NM_153093	231201.0	Mm.423959	NM_153093	ENSMUSG00000057116	AF366264	Susp4	cDNA sequence AF366264	protein-coding	4.61954552592438	4.45619637316127	4.6590806033601	4.72735484266536	4.40144660457347	4.75352831378686	4.24165751378559	4.9594786043924	-0.0221284638949753	0.954441938148922	0.983764634562976
Merged-chr4-11481859-4	chr4	11481733	11481933	+	848.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4125.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	3.94641947805043	3.88313976036072	4.0444132367456	4.08053512667376	3.9322230777458	3.78527788251049	4.38678126836168	4.04196340919205	0.158132165951503	0.720403572039905	0.888262296532504
Merged-chr9-114797715-4	chr9	114797575	114797775	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 1 of 3)	intron (NM_027294, intron 1 of 3)	-15682.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	3.52077736959736	3.88946397056272	4.10143964358322	3.64714722533411	4.11669859657183	3.88321333149606	4.03987852445629	3.96468140142464	0.57957549294203	0.207465381782863	0.511447929091922
Merged-chr13-112999039-3	chr13	112998957	112999157	+	740.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001037914, exon 7 of 7)	exon (NM_001037914, exon 7 of 7)	5189.0	NM_001037914	622408.0	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	3.55173231704244	3.8156137033341	3.44096673362555	3.2800365351334	3.56672549099964	3.496106109089	3.36953954517985	3.60235426730599	-0.0552281600407123	0.915455902877803	0.968682181942473
Merged-chr9-57162639-2	chr9	57162539	57162739	+	951.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4340.0	NM_025417	66199.0	Mm.41687	NM_025417	ENSMUSG00000032299	Commd4	1110039H05Rik	COMM domain containing 4	protein-coding	2.72322411889865	3.08786754072106	2.5782219785986	2.62460698197893	2.69356067299141	3.02624918677935	3.01685602254483	2.85328607250939	0.596536974234242	0.368730547926821	0.67318044551467
Merged-chr9-78481016-4	chr9	78480896	78481096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010106, intron 1 of 7)	CpG	728.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	7.16696879505521	7.37119372256751	7.22477277428846	7.36971413708177	7.25038084842652	7.37935992015943	7.36350579984989	7.23074853180872	0.0150556704438979	0.933128372267583	0.97591593099567
Merged-chr5-110110117-4	chr5	110110009	110110209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163996)	promoter-TSS (NM_001163996)	17.0	NM_001163996	675812.0	Mm.442122	NM_001163996	ENSMUSG00000023284	Zfp605	A830023I12Rik	zinc finger protein 605	protein-coding	6.45325694858868	6.60872576408328	6.32386676717086	6.66668409938786	6.81551063332029	6.63135699098649	6.86264905816637	6.58402662812574	0.287010794363206	0.183083723726284	0.479931757527872
Merged-chr3-54814811-4	chr3	54814702	54814902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5a|LINE|L1	-7011.0	NM_133231	170767.0	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	6.10619007075938	5.6453367457378	5.96827571283674	6.06546094296359	5.83026441911082	5.4722138149659	5.57746814609201	5.80772860425409	-0.442813580672928	0.101074600024504	0.348923061133733
Merged-chr1-106101257-3	chr1	106101145	106101345	+	762.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70279.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	3.45827218915758	3.4289212749413	3.40211581562836	3.33996638613365	3.47528486976555	3.32786151628278	3.64697363656875	3.61282255095669	0.40046339220641	0.420795516541705	0.713566714326837
Merged-chr11-8860026-2	chr11	8859926	8860126	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	151165.0	NM_001303610	15574.0	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	HUS1 checkpoint clamp component	protein-coding	2.96409500245077	2.7565819617162	3.25214316365224	2.94208251233255	3.15470786228135	3.0736787904421	3.18632165151746	3.02581958693888	0.516108051599144	0.383240065641308	0.685159161661391
Merged-chr17-17394184-3	chr17	17394081	17394281	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025934, exon 10 of 10)	3' UTR (NM_025934, exon 10 of 10)	-8505.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	5.51647559276818	5.73428085031151	5.6507463261611	5.89885918794217	5.57890962754708	5.54574034909492	5.71884674298457	5.16023154592388	-0.340914843955085	0.232830252845118	0.542464407511367
Merged-chr12-111587628-3	chr12	111587522	111587722	+	849.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021516, intron 1 of 16)	MER20|DNA|hAT-Charlie	13112.0	NM_022801	17169.0	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	3.66292152310767	3.47668874008885	3.61110511244189	3.26118344476857	3.94672096579616	3.61618431934566	3.59649703793459	3.60906248480584	0.670765161857743	0.180676222794745	0.47704412057244
Merged-chr17-71834791-3	chr17	71834701	71834901	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271483, intron 13 of 16)	intron (NM_001271483, intron 13 of 16)	52854.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	4.68805340860483	4.18386316908541	4.43208423160608	4.88983874428431	3.00603567061999	3.29545782611916	3.32294394041501	3.25191925068671	-6.6480690035631	4.06562663353578e-10	2.80958483639265e-08
Merged-chr11-67047362-4	chr11	67047263	67047463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025510, intron 2 of 4)	intron (NM_025510, intron 2 of 4)	5255.0	NM_025510	66358.0	Mm.22511	NM_025510	ENSMUSG00000020910	Adprm	2310004I24Rik|MDS006	ADP-ribose/CDP-alcohol diphosphatase, manganese dependent	protein-coding	5.44187747866666	5.24234540089165	5.29305671049045	5.20974473878725	5.80840516838624	5.37155598744219	5.49699711141479	5.59789884268471	0.52620645113857	0.0624024478683196	0.264451889330672
Merged-chr7-110615386-4	chr7	110615294	110615494	+	972.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177324)	promoter-TSS (NM_177324)	-474.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	5.45230786960717	5.80506109638961	5.64154136250481	5.25209687816372	5.77546083147854	5.93329687618704	4.94320137917896	5.35944944623663	0.0228277724482028	0.94692219523795	0.98101762641852
Merged-chr1-182376365-3	chr1	182376262	182376462	+	894.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32805.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	3.28930684261548	3.12206129300858	3.3964652921287	3.33575265634934	3.06617439924646	3.0124689541635	3.47923018242099	3.17176598505084	-0.362245690861097	0.524110245700706	0.782768094706475
Merged-chr2-128008936-4	chr2	128008909	128009109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028765, intron 11 of 17)	intron (NM_028765, intron 11 of 17)	-117029.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	5.45105058948365	5.64608787585427	5.53227279230961	5.42334674060873	5.20029565184051	5.35222757486553	5.08016674618871	5.44817366692016	-0.425079768591806	0.137636582169921	0.412693725673318
Merged-chr1-86442464-8	chr1	86442368	86442568	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	16139.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	5.43555751475978	5.3362488390953	5.28260872384583	5.03286208574895	5.70763332287911	5.89339994379293	5.40921608303655	5.7623080062188	0.765775026948633	0.0077059573506545	0.0654139925607063
Merged-chr11-43569436-3	chr11	43569339	43569539	+	617.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045530, intron 3 of 5)	intron (NM_001045530, intron 3 of 5)	32123.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	3.40334512773176	3.40970864247339	3.23418745113707	3.20558771620205	3.28683394680535	3.34560540435238	3.3367691275673	3.29151930912029	0.0146662397153982	0.977572777763302	0.991939645680407
Merged-chr12-33176144-4	chr12	33176055	33176255	+	995.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	28469.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	4.74543097319567	4.8348286957233	4.86183206126232	4.62663013072089	5.10923102282067	4.96136548351918	4.80158158963573	5.29067097594761	0.592965460176987	0.0710367795069102	0.285878155058651
Merged-chr17-79015969-3	chr17	79015869	79016069	+	977.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171004, intron 1 of 18)	intron (NM_001171004, intron 1 of 18)	4847.0	NM_001171004	75292.0	Mm.252776	NM_029239	ENSMUSG00000024070	Prkd3	4930557O20Rik|5730497N19Rik|PKD3|Pkcnu|Prkcn	protein kinase D3	protein-coding	3.61535139647052	3.49482331452412	4.07020797542982	4.10181135821774	3.69435152505749	3.79403928871327	3.87109743447021	4.1496332192222	0.0793663091800887	0.874752054016817	0.952925927223413
Merged-chr5-3362188-4	chr5	3362074	3362274	+	950.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	18281.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	4.86799737257231	4.51719130938002	5.03204266543595	4.91911280591328	4.74111407257085	4.59415428998145	4.53374896281135	5.05874817514568	-0.204581418102109	0.571948060330251	0.810969939965079
Merged-chr15-41818953-3	chr15	41818854	41819054	+	757.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 8 of 17)	intron (NR_152565, intron 8 of 17)	-12004.0	NM_001130164	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	3.65319052203383	3.37374575801478	3.28525345793241	3.23429935829085	3.33424292300308	3.45879922311771	3.38851982834849	3.34307487901093	-0.0259894634676022	0.960492373588787	0.985894969495656
Merged-chr15-78449307-4	chr15	78449160	78449360	+	884.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355601, intron 10 of 17)	intron (NM_001355601, intron 10 of 17)	19374.0	NM_001355601	71753.0	Mm.34056	NM_027902	ENSMUSG00000016942	Tmprss6	1300008A22Rik	transmembrane serine protease 6	protein-coding	3.88510467600444	4.05152235349822	4.02865209437568	3.86337965538092	4.1693783999268	3.65839813190977	3.8188640644247	3.88342153430183	-0.126532124241628	0.781014598178891	0.914773964552732
Merged-chr19-41895737-4	chr19	41895649	41895849	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199447, intron 1 of 33)	intron (NM_199447, intron 1 of 33)	404.0	NM_199447	107094.0	Mm.276044	NM_199447	ENSMUSG00000035049	Rrp12	AA408556|AA536972|mKIAA0690	ribosomal RNA processing 12 homolog (S. cerevisiae)	protein-coding	4.92530817865152	5.02215592455445	4.40195085412803	4.57708239075592	4.75013681841395	4.95892842697063	4.76355886604114	4.70713985372987	0.0957010647082888	0.791114795417658	0.918949195345575
Merged-chr11-50018962-4	chr11	50018869	50019069	+	799.512512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6362.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	4.33839374461172	4.3572079451112	4.25486404733282	4.17151504466433	4.16400000055371	3.84600097883112	4.05075820211128	4.4150992512414	-0.347765421117735	0.4049304677082	0.701981537472882
Merged-chr8-22398499-4	chr8	22398397	22398597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045473)	promoter-TSS (NR_045473)	124.0	NM_181325	18408.0	Mm.200907	NM_181325	ENSMUSG00000031482	Slc25a15	D630044L02Rik|Ornt1	solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15	protein-coding	7.35202385567933	7.44248559264477	8.06412209582077	7.53772987589867	6.95932711095335	7.37960149152979	7.11901014707386	7.17357237364005	-0.625560631732816	0.00516839319421134	0.0486872762269413
Merged-chr12-82326660-4	chr12	82326563	82326763	+	962.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 4 of 23)	intron (NM_001167983, intron 4 of 23)	15314.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	5.11552458083833	5.36554922349671	4.56504695493345	5.23723839189893	5.07774377342295	5.04636723185914	4.84670310392991	5.26355974284544	-0.0901853207549332	0.796346928733518	0.921103730429807
Merged-chr8-105455463-4	chr8	105455336	105455536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033371, intron 7 of 10)	intron (NM_001033371, intron 7 of 10)	15986.0	NM_026481	67971.0	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	6.23398697361686	6.33579841669253	6.30871856650385	6.5256474580284	6.13189700570101	5.90932586429259	6.1452909777585	5.95663112787384	-0.492049090765833	0.0352124262806323	0.186030230106816
Merged-chr17-33904097-4	chr17	33904001	33904201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1034.0	NR_040470	474160.0	Mm.206186	NR_040470	ENSMUSG00000092349	Platr17	-	pluripotency associated transcript 17	ncRNA	5.419484551873	6.17816904431773	5.59756328220558	5.26378661809521	5.90365824547602	6.08703078806256	5.62290896704816	5.72444562607694	0.306701571288737	0.33764156983407	0.647406119486367
Merged-chr13-113355129-1	chr13	113355029	113355229	+	544.0	f1_balb.idr	Intergenic	Intergenic	145470.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	2.85068320732489	3.50315092599732	3.42801543786347	2.97229986406551	3.31818274428276	3.37611126388597	3.36108741735523	3.3730353381034	0.507781187423781	0.397991899210935	0.696258396881932
Merged-chr7-3595394-4	chr7	3595276	3595476	+	816.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20781.0	NM_175632	232790.0	Mm.358882	NM_175632	ENSMUSG00000054594	Oscar	mOSCAR|mOSCAR-M1|mOSCAR-M2|mOSCAR-M3	osteoclast associated receptor	protein-coding	4.56032248626946	4.63180852917378	4.06701212524656	4.06311449290341	4.36969259145728	4.24717819896208	4.5756488116723	4.44113487642148	0.152332500304316	0.713684965868832	0.885468561919243
Merged-chr16-4936278-4	chr16	4936147	4936347	+	844.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037666, intron 2 of 2)	intron (NR_037666, intron 2 of 2)	-2864.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	4.28528671327024	3.987066191976	4.51016839535323	4.01468556472952	4.09152521765722	4.03023141110732	4.092634487326	3.90520852324244	-0.442319099434676	0.308785540685555	0.621122647387586
Merged-chr2-119675566-3	chr2	119675445	119675645	+	998.888916	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_030112, intron 1 of 17)	CpG	477.0	NM_030112	76246.0	Mm.33437	NM_030112	ENSMUSG00000027304	Rtf1	2900005O08Rik|6530416A09Rik|AI853581|AU043144|AW553985|Gtl7|cbp82	RTF1, Paf1/RNA polymerase II complex component	protein-coding	5.05789685896717	5.03983678050364	4.77885640135361	4.54284178407885	5.17226917177165	4.95417558820447	4.96993547615222	4.60926317873323	0.184370772397605	0.607319184815559	0.82995485412866
Merged-chr14-118910644-5	chr14	118910537	118910737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360412, intron 8 of 22)	L1MC3|LINE|L1	12154.0	NM_001360413	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	5.27566533975936	5.20867116699441	5.43975627186962	5.39078155118462	4.94160035500327	4.74072724977477	5.19123378907001	4.94325632411514	-0.697829205353825	0.024546764092491	0.146553776324393
Merged-chr5-113672643-4	chr5	113672559	113672759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22269.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	7.57161815021581	7.74839465263437	7.63295231021041	7.41416416144611	7.31677741343643	7.75005939423319	7.67634201596069	7.15530529215159	-0.131913602808109	0.522479852430389	0.781971587334536
Merged-chr17-55963349-4	chr17	55963233	55963433	+	888.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028381, intron 3 of 7)	intron (NM_028381, intron 3 of 7)	-3932.0	NR_108021	100504333.0	Mm.391908	NR_108021	ENSMUSG00000097077	Gm16712	-	predicted gene, 16712	ncRNA	4.19712011978239	4.15545237729214	3.98688673049966	4.06531308919964	4.71189632751621	4.3738866549545	4.51686837965873	4.6427651758675	1.12149156126391	0.00305041241730967	0.0324115995598873
Merged-chr11-22631701-4	chr11	22631582	22631782	+	884.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119399.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	3.64301079968506	3.73002042396836	4.56829888646595	3.87260643712849	4.19827176158551	4.33689958147657	3.69208177174868	3.87564138645739	0.119523109994354	0.820183447130174	0.931186996894099
Merged-chr17-35740546-4	chr17	35740441	35740641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-31909.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	6.88840082712733	7.40817110035209	7.64786933878567	7.14075043284509	7.27387907641101	7.05342525094727	7.22175756069154	7.10644909450037	-0.173558216095954	0.431366916776865	0.721675024613162
Merged-chr17-88435880-4	chr17	88435775	88435975	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4829.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	5.393558427135	5.56365153489154	5.42248950533157	5.24936212112757	5.23681778430943	5.56752959459997	5.01335883167315	5.17546629665408	-0.259711278468611	0.390440140917593	0.690570939884669
Merged-chr16-10767375-4	chr16	10767284	10767484	+	724.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18152.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	3.56693590920172	3.53332839288888	3.77311547977413	3.34858733275088	3.63095415433685	3.4380090827473	3.88987206340353	3.72247325404329	0.404846705926826	0.416103763836845	0.710072021761014
Merged-chr8-47714527-2	chr8	47714427	47714627	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172407)	promoter-TSS (NM_172407)	-596.0	NM_172407	70925.0	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	6.19241839013414	6.66173096950552	6.69739193774255	6.59354562933823	6.34406744866418	6.65524971664585	6.5592907807544	6.57260774416651	-0.0373031169319614	0.869554121416036	0.951054729822361
Merged-chr3-69756699-4	chr3	69756594	69756794	+	896.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34639.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	3.90456447758382	4.29315841058717	4.06620613055311	4.07632567334147	4.29592836214389	4.46717244055588	4.4708948051582	4.01234749613165	0.566040286084498	0.170651452230503	0.463883892240405
Merged-chr11-98148930-4	chr11	98148837	98149037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028149, intron 1 of 14)	intron (NM_028149, intron 1 of 14)	679.0	NM_028149	72194.0	Mm.218350	NM_028149	ENSMUSG00000020883	Fbxl20	2610511F20Rik|4632423N09Rik|AI849362|AL117906|C86145|Fbl2|Scr|mKIAA4147	F-box and leucine-rich repeat protein 20	protein-coding	6.13914139708035	5.97101789007177	5.95321043098243	5.84142301667331	6.06471034793783	5.82968660258622	6.02955266401634	6.09664691067876	0.0706843184133111	0.770116773870482	0.910053156810556
Merged-chr15-25985605-4	chr15	25985500	25985700	+	878.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144523, intron 1 of 5)	B1_Mus1|SINE|Alu	1234.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	4.05460667415494	3.80503740373131	3.85870840709731	3.62270741243994	4.06901273392859	4.033267717337	4.12419162864302	4.09739621766619	0.701076274515836	0.104592241813428	0.355647598530454
Merged-chr13-74010513-8	chr13	74010324	74010524	+	859.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182839, intron 1 of 3)	intron (NM_182839, intron 1 of 3)	1005.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	3.83822069196745	3.68820447243534	3.7366046751717	3.54012869071455	3.95700947961965	3.74406212005934	3.61206476656414	4.10086217297483	0.518083208714159	0.267880241793939	0.579713969205978
Merged-chr17-5978550-7	chr17	5978417	5978617	+	997.365051	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151772, intron 2 of 25)	intron (NR_151772, intron 2 of 25)	2931.0	NM_011523	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	4.79031538077788	4.73869325934556	4.96293064303915	4.69898560834322	4.82570178043667	4.88870643320021	4.48364744038367	4.78792264879908	-0.0735907287454179	0.829538642032497	0.934573663797877
Merged-chr11-115601279-4	chr11	115601084	115601284	+	935.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173048, intron 1 of 16)	intron (NM_173048, intron 1 of 16)	2732.0	NM_001252067	260302.0	Mm.119479	NM_173048	ENSMUSG00000020740	Gga3	C230037M19Rik|mKIAA0154	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding	4.45263251966266	4.79146412017674	4.45334414810075	4.68058414211214	4.0579190181496	4.30904538012787	4.06091514243951	4.27618508498199	-1.04768407819496	0.00770648663303191	0.0654139925607063
Merged-chr10-117843820-4	chr10	117843733	117843933	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	2141.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	5.22707113466173	5.55879945903958	5.40964659335311	5.493505247043	5.49587179453757	5.19511187540922	5.38264941776286	5.1229439167547	-0.207752267897174	0.478303921841617	0.754430714489429
Merged-chr7-98584746-4	chr7	98584658	98584858	+	822.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71811.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	3.88914660787435	3.94776286199968	3.83799660248219	3.75210588892818	3.97985249270656	4.06153955164102	3.82254706253161	4.11825769142426	0.410145659225563	0.339312692266907	0.648670913782522
Merged-chr4-85695388-3	chr4	85695287	85695487	+	962.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie5|DNA|hAT-Charlie	-358528.0	NM_029967	77739.0	Mm.331690	NM_029967	ENSMUSG00000066113	Adamtsl1	5930437A14Rik|6720426B09Rik|ADAMTSL-1	ADAMTS-like 1	protein-coding	3.32250858492554	3.36561435019073	3.67801085023616	3.52624533814926	4.53467370886257	4.28379796458535	4.40871698116205	4.56318695293953	2.63722755565808	5.72684611036305e-08	2.58977877566411e-06
Merged-chr12-17748239-4	chr12	17748147	17748347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	57438.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	6.26074273383026	6.19345655440928	6.07116537573234	6.32035800587147	5.82419101106696	6.02314475540476	5.76676051973258	5.68544836525122	-0.620958312677435	0.0102681431617891	0.0804841055074318
Merged-chr18-40329796-3	chr18	40329713	40329913	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026135, intron 1 of 1)	L1M4c|LINE|L1	71452.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	3.37010747812181	3.25835072794478	3.37051511033957	2.94722930518694	4.70607215136223	4.96775456442169	4.96690204136472	5.23425136242647	5.67628378667994	1.30598315553033e-07	5.46758781013753e-06
Merged-chr12-35049251-3	chr12	35049146	35049346	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	2057.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	3.59251214218941	3.61246052177082	4.15117554114279	4.18860863150122	3.6499928359709	3.38064045517708	3.32732166271296	3.94508294505211	-0.952349219750341	0.08918525566213	0.32582853322254
Merged-chr9-21962552-4	chr9	21962390	21962590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010149, intron 1 of 7)	intron (NM_010149, intron 1 of 7)	1086.0	NM_010149	13857.0	Mm.2653	NM_010149	ENSMUSG00000006235	Epor	-	erythropoietin receptor	protein-coding	4.63756606892787	4.25802351045004	4.40174871349553	4.56860054500593	4.22205029258411	4.48656741415488	4.38199090693013	4.56129336795048	-0.15705444184352	0.680416814188795	0.868886456682011
Merged-chr7-75822559-4	chr7	75822446	75822646	+	895.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-25792.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	3.90099941143272	4.11607340777019	3.90154064010215	4.3316781602458	4.08314384354776	3.85352409528848	3.72070725500276	4.26122155553027	-0.237619986499775	0.607503406205745	0.830012990472744
Merged-chr13-23729244-6	chr13	23729143	23729343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9564.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	5.12967586670095	5.15743250289116	5.68153166638432	5.46596643578833	5.07822117585062	5.2374063148383	5.07093701317691	5.56087626496314	-0.242465563185046	0.450170698232109	0.735193734723172
Merged-chr12-40538484-4	chr12	40538392	40538592	+	906.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	92439.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.39884884445535	4.01356691536833	3.91061708401249	4.70195975444458	4.35106136972422	4.39854634997614	4.37927751697225	4.22274631305126	0.0547160589264357	0.902555512981167	0.963848753135321
Merged-chr15-38244999-4	chr15	38244867	38245067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	25764.0	NM_008757	18285.0	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	6.64010001528774	6.29720162861925	6.03579511657736	6.7240132389327	6.75760922710557	6.73996424795262	6.9459174019644	6.19053376985111	0.32505567549876	0.228206250588185	0.537049703453888
Merged-chr17-47503262-2	chr17	47503162	47503362	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022015)	promoter-TSS (NM_022015)	-971.0	NM_022015	63856.0	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	3.05039388448978	3.14851087641799	3.05077519297648	2.65946344560567	3.50447909129631	3.22429798469535	2.97690035244037	2.98560054104362	0.83735741124735	0.184900427339434	0.482583877881841
Merged-chr16-36875040-4	chr16	36874936	36875136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134111)	promoter-TSS (NM_134111)	-210.0	NM_134111	106389.0	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	8.81114838609252	8.99344693353546	8.87538533301047	8.83505247840267	8.9616256767034	9.03799508623694	8.78879988830225	8.63441282052572	-0.0175695354274812	0.911176587174759	0.966911184949593
Merged-chr10-4432473-4	chr10	4432370	4432570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025343)	promoter-TSS (NM_025343)	-82.0	NM_001358796	66084.0	Mm.153111	NM_025343	ENSMUSG00000019763	Rmnd1	0610042C05Rik|AA408137|AI462664|AW536662	required for meiotic nuclear division 1 homolog	protein-coding	8.71414147649559	8.71307528860972	9.09369762731676	8.93597659804436	8.53429403360062	8.75269315896411	8.57336670386065	8.74798367449553	-0.277314006289759	0.0905866869450843	0.328704618172112
Merged-chr4-11235677-4	chr4	11235571	11235771	+	877.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159595, intron 8 of 26)	intron (NM_001159595, intron 8 of 26)	18588.0	NM_178112	72656.0	Mm.246713	NM_178112	ENSMUSG00000040738	Ints8	2810013E07Rik|AV063769|D130008D20Rik	integrator complex subunit 8	protein-coding	3.87755481266103	3.94986151274129	4.30146525996813	4.679567862198	4.57176748370976	4.23304564717034	4.82075313389329	4.34326501727072	0.578973161071315	0.218495208586641	0.525782572429468
Merged-chr17-56626365-2	chr17	56626265	56626465	+	768.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357897)	promoter-TSS (NM_001357897)	538.0	NM_028782	74142.0	Mm.329136	NM_028782	ENSMUSG00000041168	Lonp1	1200017E13Rik|LON|Prss15	lon peptidase 1, mitochondrial	protein-coding	3.15294301463048	2.99199766320631	3.26558242598185	2.96999692362482	3.15701772499015	3.00363701140417	3.08233674622068	3.41504326932322	0.320795514894461	0.576010559560401	0.813327824220388
Merged-chr9-105521348-3	chr9	105521249	105521449	+	888.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253831)	promoter-TSS (NM_001253831)	-92.0	NM_001253831	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	3.30340614175262	3.43774389414317	3.30376463370449	3.36773671646494	3.91294567226751	4.00809466733385	4.22609066927527	4.01425773664142	2.06479476273047	2.06743343208578e-05	0.000524253096766775
Merged-chr14-14632735-3	chr14	14632602	14632802	+	841.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70323.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	3.58336954818938	3.71723784780317	4.00404287095831	3.69438006384252	3.46961681886728	3.52118606970827	3.56993466913525	3.52545588439522	-0.751319645396541	0.124811614408426	0.392172737029896
Merged-chr9-13663452-3	chr9	13663361	13663561	+	711.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	1001.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	3.04681965466425	3.09780191365926	3.22035352293226	3.19022170787702	2.66096362631377	2.88193333312486	3.35737920678834	3.10587922499589	-0.461773682819892	0.475340430450872	0.752206680726158
Merged-chr15-59374125-4	chr15	59374009	59374209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026746)	promoter-TSS (NM_026746)	43.0	NM_153548	223593.0	Mm.218665	NM_153548	ENSMUSG00000022350	Washc5	AL022848|C76463|E430025E21Rik|Kiaa0196|mKIAA0196|strumpellin	WASH complex subunit 5	protein-coding	6.35377507393574	6.39668597860164	6.64452130855317	6.00503053062352	6.41123304767222	6.4568721307278	6.10685958644452	6.62534010875054	0.087307234117604	0.731216782877189	0.893500186922378
Merged-chr14-101652630-3	chr14	101652516	101652716	+	906.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1351.0	NM_016723	50933.0	Mm.275970	NM_016723	ENSMUSG00000022111	Uchl3	-	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	protein-coding	3.53029177352769	3.83019719390503	3.74197859867317	3.77796028652137	3.72553653859733	3.70315856814899	3.33588229338588	3.47036556185217	-0.483565134514047	0.332879144685183	0.643788844678476
Merged-chr11-68968049-4	chr11	68967957	68968157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028048)	promoter-TSS (NM_028048)	-74.0	NM_028048	71998.0	Mm.298622	NM_028048	ENSMUSG00000018740	Slc25a35	1810012H11Rik	solute carrier family 25, member 35	protein-coding	6.20671803586107	6.22324602014996	6.0630819904675	6.31807886758909	6.46822597022306	6.10242128604619	6.46909926310712	5.94433206738676	0.0944117735608226	0.701850720086318	0.879887873504074
Merged-chr3-115695790-4	chr3	115695690	115695890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19265.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	6.40008586550111	5.87973649976109	6.57914376906957	6.34679491581721	5.53656046351751	5.81469821284463	5.63444024957044	6.02853908180331	-0.886527595782756	0.00134516225431139	0.0171130123502467
Merged-chr3-79287919-2	chr3	79287819	79288019	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57457.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	3.46895547621373	3.28651447441558	3.31173703232592	3.15150808487901	3.04822473173594	3.17684155773128	3.24231505714786	3.41702870729551	-0.292094464967351	0.597364998417738	0.825256992211092
Merged-chr7-127512972-4	chr7	127512870	127513070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024331)	promoter-TSS (NR_024331)	-101.0	NR_024331	629159.0	Mm.256720	NR_024331	ENSMUSG00000101225	1700008J07Rik	AW048743	RIKEN cDNA 1700008J07 gene	ncRNA	6.30650594376869	6.36033832589946	6.52905221478351	6.01236508881493	6.51345147022409	6.44597121939657	6.38185738239707	6.20642214989866	0.146617031229759	0.539197574346989	0.791983989773924
Merged-chr17-87025415-4	chr17	87025283	87025483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008838)	promoter-TSS (NM_008838)	18.0	NM_008838	18701.0	Mm.219685	NM_008838	ENSMUSG00000024145	Pigf	-	phosphatidylinositol glycan anchor biosynthesis, class F	protein-coding	7.77038904245528	7.50241514146802	7.62155947323007	7.77043727861158	7.99485727693951	8.13152342864337	7.88852057781095	7.7183666925252	0.348672439890892	0.0511840889097515	0.23477460139884
Merged-chr1-58505040-4	chr1	58504931	58505131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271526)	promoter-TSS (NM_001271526)	78.0	NM_001271526	18393.0	Mm.3411	NM_008765	ENSMUSG00000026037	Orc2	AU041563|Orc2l	origin recognition complex, subunit 2	protein-coding	7.55502934632253	7.55145185169271	7.25362172355639	7.76068285152511	7.53954260119736	7.62117556864261	7.73222893412991	7.56891399098483	0.0800214598691734	0.670285338791531	0.863971607870819
Merged-chr17-32284056-4	chr17	32283953	32284153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198094)	promoter-TSS (NM_198094)	70.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	7.15742874740936	7.00237550812395	6.9949959165245	7.1166327985886	6.79640969772018	7.08112669920745	6.9596696018658	6.72720310348948	-0.248896604661189	0.203813500773815	0.506820890566635
Merged-chr10-95529671-3	chr10	95529600	95529800	+	811.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	intron (NM_080560, intron 1 of 3)	14538.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	3.57622500301993	3.14480417648092	3.05377455964561	3.35714899165877	3.1720309341351	3.59409639840468	3.51272603738314	3.31042251818614	0.361795174002364	0.520875691239052	0.781061153339187
Merged-chr12-65154495-4	chr12	65154398	65154598	+	929.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172578, intron 5 of 13)	L2a|LINE|L2	18082.0	NM_172578	217653.0	Mm.21144	NM_172578	ENSMUSG00000047534	Mis18bp1	6720403H11|C79407|Knl2|mKIAA1903	MIS18 binding protein 1	protein-coding	4.85185929143797	5.24398251142793	5.44095441519452	5.44775875503813	4.43190074472366	4.9139431395919	4.58517851777962	4.18499501937332	-1.47881181399765	0.000105091156108149	0.00211786053245242
Merged-chr18-65524274-3	chr18	65524179	65524379	+	891.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 2 of 6)	intron (NR_105742, intron 2 of 6)	-55951.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	3.89965423054054	3.53114716043783	3.40268284604338	3.5648256322604	3.37776544556146	3.51760518427096	3.39055350910663	3.673569101158	-0.384043901305844	0.453664566452854	0.73762335852288
Merged-chr7-110816288-3	chr7	110816195	110816395	+	824.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025999)	TTS (NM_025999)	28086.0	NM_025999	67150.0	Mm.96867	NM_025999	ENSMUSG00000030788	Rnf141	2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230	ring finger protein 141	protein-coding	3.72169318125805	3.67466380089812	3.82394686029433	3.584603186711	3.82589276693718	3.89374928231178	3.65392907299999	3.86958397136704	0.357514927291368	0.429912612948535	0.720635978674715
Merged-chr1-45837876-2	chr1	45837776	45837976	+	762.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42710.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	3.178268416107	2.96340652582913	3.17869928892036	3.34257479130035	2.89153478095032	3.17203986382028	2.99044836087278	2.99894743141516	-0.688532609522839	0.244669582043386	0.555808536831526
Merged-chr7-141468735-4	chr7	141468628	141468828	+	995.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111050)	promoter-TSS (NM_001111050)	-61.0	NM_001111050	12476.0	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	5.53494714313129	5.67844201509251	5.38702459698565	5.64972680175332	5.80103115311732	5.93975539972131	5.80511669739309	5.35138330865893	0.27962641786256	0.315652686518399	0.627490510363011
Merged-chr15-83174353-4	chr15	83174239	83174439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2131.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	7.96204528053058	8.35291440437318	7.94923207595713	7.71005617134952	8.14440396570986	8.26782094272883	8.05799438897449	7.92240238385837	0.120679894159453	0.538247445540162	0.791437674064271
Merged-chr5-64412567-4	chr5	64412455	64412655	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55387.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	4.92861673772548	5.50796976733724	4.78715914066008	4.18851903211602	4.84069160072069	4.99916424642337	4.51850662035088	4.3414116662064	-0.483270728676648	0.288628728847401	0.600640401433433
Merged-chr17-33903502-4	chr17	33903411	33903611	+	915.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	-1624.0	NR_040470	474160.0	Mm.206186	NR_040470	ENSMUSG00000092349	Platr17	-	pluripotency associated transcript 17	ncRNA	4.33758826179957	4.5839970588637	4.38403884180737	4.17298868340548	4.7467046810249	4.60202828659161	4.31924583908892	4.73261365837842	0.56301646357222	0.137413083600185	0.412339394027364
Merged-chr18-38348759-4	chr18	38348657	38348857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9764.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	5.43488185628349	4.94174153626358	5.38270850559532	5.23462216698602	4.9609559244429	5.18245880380319	5.11919924478686	5.23546877162262	-0.251561985796673	0.418472516286428	0.71194739798154
Merged-chr5-110421151-4	chr5	110421046	110421246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142642, intron 2 of 18)	intron (NM_001142642, intron 2 of 18)	27357.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	6.15804720983936	6.59886475990932	6.27357728875937	6.71507218686457	5.84105374790638	5.67729944642456	5.8877389293461	6.00673133558552	-0.945313405527465	0.00023155060568612	0.00410090583780351
Merged-chr8-39641763-4	chr8	39641652	39641852	+	971.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	926.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	4.63592033655143	5.2011981068959	5.03967246687217	5.04576875060563	4.47541837006197	4.77125909915234	4.95095046344235	4.7169044548982	-0.553326850229573	0.117845258264408	0.379758585566929
Merged-chr7-4739856-4	chr7	4739749	4739949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001115018)	promoter-TSS (NM_001115018)	-278.0	NM_146177	232811.0	Mm.247844	NM_146177	ENSMUSG00000059851	Kmt5c	BC024816|Suv4-20h2|Suv420h2	lysine methyltransferase 5C	protein-coding	9.35197857474764	9.44205018596852	9.43467285491423	9.19904374426248	9.2927781882826	9.47412248833001	9.48021912849232	9.34493238490342	0.0509977517808505	0.722256612268385	0.889145957666795
Merged-chr9-46283010-4	chr9	46282909	46283109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146000)	promoter-TSS (NM_146000)	-3.0	NM_146000	215051.0	Mm.32648	NM_146000	ENSMUSG00000032077	Bud13	AV305342|D030060M11Rik	BUD13 homolog	protein-coding	6.13885673290588	6.23401977836245	5.6907743960714	5.98883370440991	6.25715598222648	6.29489903683397	6.00543304477821	6.13554976085451	0.232427023351901	0.349181064259851	0.65679883028286
Merged-chr15-36879877-4	chr15	36879772	36879972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-82943.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	6.66389491754055	6.56048772518186	6.47113829376841	6.8949877924906	6.50561233679252	6.46132452753188	6.84937200537643	6.51783668442368	-0.115697042527138	0.610075925429885	0.831458714767722
Merged-chr14-65064803-4	chr14	65064705	65064905	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360385, intron 3 of 5)	RMER10B|LTR|ERVL	33301.0	NM_018788	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	5.02091036970579	4.76480758410788	5.40791555347948	5.36227923040027	5.41948593811757	5.37257110199219	5.51137470491534	5.51038308985786	0.497916479148008	0.114009456138023	0.373450486813086
Merged-chr1-55505160-4	chr1	55505057	55505257	+	951.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	Lx8|LINE|L1	99211.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	5.33590733244417	5.28000223353475	5.19007517235636	5.30434040368648	5.08317899950469	4.74592435929406	5.10121689259645	5.15501752647131	-0.459734863798389	0.131760401865666	0.404175330626236
Merged-chr1-45865922-4	chr1	45865827	45866027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59667.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	5.91468021315459	5.77112953831907	6.05989333909981	6.36493488740639	5.31285361664655	5.49468231768025	5.81855455137481	5.53297347720537	-0.847562154835867	0.00324760081229045	0.0339692840878798
Merged-chr5-115333875-4	chr5	115333772	115333972	+	861.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025573)	TTS (NM_025573)	6695.0	NR_036616	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	4.5107478174637	4.31892412729469	4.80149150966637	4.78929483939799	4.21759138380087	4.08861687859527	4.40724731914837	4.73182385348141	-0.554034787704619	0.176468278467762	0.471538238345853
Merged-chr10-63247687-4	chr10	63247606	63247806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359484, intron 3 of 22)	intron (NM_001359484, intron 3 of 22)	3909.0	NM_001359484	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	5.74070424520447	6.09887410212625	6.17427231773541	6.12908670946443	6.17649634623455	6.09514290168007	6.18043627528014	6.04861924592	0.115029813409436	0.631350672728537	0.843384684598463
Merged-chr5-113636034-4	chr5	113635933	113636133	+	989.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	7570.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	5.74948526267821	6.33375073239812	6.10186513067258	5.78047200328404	5.8303412852486	6.00002390603091	5.81802086818059	5.10536522806923	-0.449507112728234	0.153901646381751	0.438884485591029
Merged-chr8-45332453-2	chr8	45332353	45332553	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133969, intron 1 of 10)	intron (NM_133969, intron 1 of 10)	743.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	3.04673013890186	2.7719025893252	3.1614487545289	2.83834686440177	2.73314091825756	3.03259924821422	3.03539822369688	3.31355258066161	0.345462710058686	0.583212582011395	0.816949076417655
Merged-chr8-119098418-1	chr8	119098318	119098518	+	652.5	f0_balb.idr	intron (NM_019707, intron 7 of 13)	intron (NM_019707, intron 7 of 13)	-246120.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	2.89680553023093	3.04375078858735	3.31716103746497	3.01437152949514	2.52067264508615	2.64898213445808	2.82382710127804	2.7652438027105	-1.90139652872858	0.00658052269403376	0.0580919043580093
Merged-chr3-69154907-4	chr3	69154793	69154993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126533, intron 2 of 2)	intron (NR_126533, intron 2 of 2)	23660.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	6.81040988687423	7.14047973732389	6.72508321867595	7.06578602768772	6.82011785051424	6.69233528113969	6.3518822314892	6.84786476065793	-0.364842343316162	0.103948228295785	0.354362372356501
Merged-chr11-78751669-4	chr11	78751528	78751728	+	926.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_197989, exon 1 of 1)	exon (NM_197989, exon 1 of 1)	101.0	NM_197989	69109.0	Mm.341420	NM_197989	ENSMUSG00000049489	Fam58b	1810009O10Rik|Ccnq|Fam58a	family with sequence similarity 58, member B	protein-coding	4.67327937645828	4.59186711706497	4.56068541252399	4.42398559074394	4.05676703165304	4.32631124136367	4.61525879718666	4.74109431335944	-0.237941397040122	0.550519682725484	0.798659719890699
Merged-chr7-141949683-4	chr7	141949575	141949775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276763)	promoter-TSS (NM_001276763)	-76.0	NM_001009930	75770.0	Mm.274868	NM_029426	ENSMUSG00000053046	Brsk2	4833424K13Rik|SAD-A|SADA	BR serine/threonine kinase 2	protein-coding	6.59915504792846	6.67560003683939	6.38278153677671	6.66750533012646	6.56353740825237	6.3635897646367	6.48774235849673	6.34118334028147	-0.212140125442241	0.324559880978076	0.636151666477721
Merged-chr6-89281665-6	chr6	89281589	89281789	+	915.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131021, intron 1 of 3)	intron (NR_131021, intron 1 of 3)	4036.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	4.0025279548428	4.19758190482245	4.00309634912882	4.21354433081322	3.95691229607449	4.1754700988516	3.88442142488091	4.34758350888567	-0.0464650019369366	0.913303680818922	0.967512811762258
Merged-chr7-121332875-1	chr7	121332775	121332975	+	978.0	f0_c57.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-59421.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	4.77875276594549	4.49940202265452	4.35602290168209	4.34035649425028	5.01699586909538	4.71860827550399	4.75653565446703	5.00628105927389	0.840225504073245	0.0175388367311829	0.117110399595579
Merged-chr10-127621148-6	chr10	127621071	127621271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008512)	promoter-TSS (NM_008512)	-23.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	6.41506205836697	6.32894070247802	6.61320499900116	6.5538663269469	6.34329128520763	6.62743963501483	6.80061779697889	6.3384970513292	0.0742981612986005	0.746066231676411	0.899919476436117
Merged-chr10-44602294-4	chr10	44602198	44602398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143550.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.49323542528092	6.43767155697506	6.444930098509	6.62736953501738	6.3979594545562	6.231491777756	6.1735275715588	6.25985370395125	-0.352649801122742	0.107060531820755	0.36097113327031
Merged-chr8-33654731-4	chr8	33654765	33654965	+	804.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	1627.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	2.85941503800005	2.83456145582099	2.78795960396891	2.60068634387763	3.15690539741435	3.04024474043679	3.26210623170569	3.46360379848532	2.05584237949446	0.000641901341162038	0.00941982942942202
Merged-chr9-40397270-4	chr9	40397164	40397364	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	-20847.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	5.18126601667681	4.80230961611451	5.21036511289507	5.1921448896284	4.65472904968972	4.45055262734939	4.87127918703421	4.81781959671562	-0.808964873740889	0.0186259659362848	0.122101457854008
Merged-chr7-114275503-4	chr7	114275368	114275568	+	849.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011965, intron 1 of 9)	intron (NM_011965, intron 1 of 9)	648.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	4.26506188125993	3.92423437839613	3.9833753519373	4.13219653337384	4.03678830711147	4.30431808221161	4.15985609250487	4.38352748000696	0.34624573815242	0.401275506862693	0.698902185040211
Merged-chr19-5389774-3	chr19	5389643	5389843	+	681.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033224, exon 1 of 1)	non-coding (NR_033224, exon 1 of 1)	-1040.0	NM_016882	20227.0	Mm.34562	NM_016882	ENSMUSG00000039148	Sart1	U5-110K	squamous cell carcinoma antigen recognized by T cells 1	protein-coding	3.26818556628371	2.99233921897801	3.26865410405301	2.87710371342217	3.15902554833819	3.38307553167717	2.95553989338728	3.15372187613538	0.262885302944464	0.655623221290286	0.8562015216165
Merged-chr6-32586425-4	chr6	32586348	32586548	+	842.429199	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	1744.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	3.82921715327156	4.19806461416647	4.24648935143823	3.99253482251478	4.04395530094451	3.89374471547843	3.91854485403426	3.82764662135437	-0.392152151478945	0.370961005716247	0.675068605253279
Merged-chr18-43493889-3	chr18	43493787	43493987	+	627.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55601.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	3.70801229485345	3.52011337397388	3.60710621447471	3.54070844678183	3.50401012082071	3.6691359494991	3.6928554896821	3.49509789930366	-0.00368278782872771	0.993858044351729	0.997702270136287
Merged-chr4-32229438-3	chr4	32229330	32229530	+	899.744446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-188005.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	3.47430311283016	3.33651380374827	3.4748246784087	3.45429967612703	2.97779620240311	3.24956533893003	3.12794152084953	3.07150905772777	-1.30193595061719	0.0206075037334706	0.130627972949034
Merged-chr4-138216735-2	chr4	138216635	138216835	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122897)	promoter-TSS (NM_001122897)	123.0	NM_001285478	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	4.0997908609019	4.61667971339051	4.15006440609688	4.05442721753508	4.2170847603922	4.46044188593326	3.97911975517662	4.44980885451963	0.0981867644042417	0.81962211253632	0.930948039985942
Merged-chr6-70714467-4	chr6	70714369	70714569	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77706.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	5.64414104559983	5.54714968730806	5.25613509906249	5.63757242511352	5.33444520995587	5.22425575281829	5.38223707119985	5.34644842589212	-0.378957136922962	0.18066500983656	0.47704412057244
Merged-chr10-6694651-4	chr10	6694568	6694768	+	935.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63925.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	4.30179572274181	4.33099722732616	4.14937146976436	4.53158231477184	4.8037184850763	4.77280601208739	4.54226241781308	4.59930352872544	0.739926418161154	0.0490341599513652	0.22892448702357
Merged-chr1-155210626-4	chr1	155210555	155210755	+	761.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51952.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	3.83481725153511	3.93216631751014	3.78393696798917	3.97681513280203	3.80530757808541	3.5392553544796	3.96075119831351	3.93002112330888	-0.202206925316776	0.657718224176968	0.857477983748052
Merged-chr14-121906612-4	chr14	121906498	121906698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 2 of 8)	intron (NM_026861, intron 2 of 8)	9176.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	6.15541706560911	5.78787947442979	6.46060885179565	6.5363464318121	5.52112913264476	5.54238662191614	5.9624860522864	5.87516528300774	-0.853509931370029	0.00321909057415737	0.0337214407832995
Merged-chr15-10470306-4	chr15	10470212	10470412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030046, exon 1 of 12)	exon (NM_030046, exon 1 of 12)	204.0	NM_030046	78244.0	Mm.297862	NM_030046	ENSMUSG00000044224	Dnajc21	4930461P20Rik|9930116P15Rik	DnaJ heat shock protein family (Hsp40) member C21	protein-coding	7.21758713104997	7.05139942620199	7.25115015239842	7.51672112523956	7.10412700551868	6.97346930158923	7.5459094784396	6.88049790775708	-0.170582819207796	0.452076215634134	0.736506542500902
Merged-chr2-23021793-4	chr2	23021675	23021875	+	992.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	RMER19B|LTR|ERVK	18466.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	4.65702539860226	4.87158785329812	5.61508955986334	4.94443158722779	4.81268902627067	4.88109163809012	5.0160648474461	5.03737273664418	-0.254484875352027	0.49176788682529	0.763187446051088
Merged-chr17-28693755-3	chr17	28693652	28693852	+	719.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	1184.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	3.5039883335955	3.66306399696031	3.33474632013108	3.32096578391734	3.52237364970385	3.31953901977268	3.38124683337944	3.55434289604072	-0.0222628697000286	0.965546719010285	0.987806682176544
Merged-chr10-10554427-4	chr10	10554320	10554520	+	974.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	3787.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	4.74205388715858	4.43085139485941	4.50656211187531	4.88736263175187	4.56301495364573	4.91312722686858	4.64685310153957	4.26784452135867	-0.114594072769368	0.766539801334921	0.908660493187862
Merged-chr2-60284334-4	chr2	60284221	60284421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290660, exon 1 of 6)	5' UTR (NM_001290660, exon 1 of 6)	163.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	8.25004106906758	8.49558056911625	8.60611109848658	8.16088070383489	8.31540834574005	8.49756705348218	8.27532063663375	8.26341791103865	-0.0572239426207568	0.74207742682467	0.898417179766546
Merged-chr4-62349622-4	chr4	62349540	62349740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 2 of 27)	intron (NM_001355385, intron 2 of 27)	10956.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	6.7121316909826	6.96338927628276	6.60770981913625	6.83856847324982	6.52432058886084	6.78400404063399	6.33296396435395	6.26196055092015	-0.435543897223587	0.0540240733953204	0.242661868635862
Merged-chr1-51477772-6	chr1	51477628	51477828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310549, intron 1 of 5)	intron (NM_001310549, intron 1 of 5)	671.0	NM_001310548	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	4.56965967316453	4.78882105823715	4.57036792696384	4.72655021011588	4.79232705685569	5.02198320053385	4.92865493082004	5.10442054601632	0.580186568748162	0.0813627045115579	0.309464355264945
Merged-chr19-43523628-4	chr19	43523515	43523715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 1 of 8)	intron (NM_010324, intron 1 of 8)	990.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	7.04384302830867	6.88948781144306	7.50494934109752	7.65261166679537	7.50804227102709	7.04375943571669	7.65779484458361	7.40693662565817	0.14131112623042	0.562582110223002	0.805707247859895
Merged-chr6-85410878-3	chr6	85410789	85410989	+	823.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12997.0	NM_001007472	384452.0	Mm.347883	NM_001007472	ENSMUSG00000068302	Noto	Flh|MmNot|Not|tc	notochord homeobox	protein-coding	4.20764970869159	3.48933590078668	3.60672852934204	3.95319964012146	3.90817312862977	4.06558127303685	3.92511619550007	4.28299393178921	0.551215759097778	0.259973935594806	0.571732270760985
Merged-chr18-24652173-4	chr18	24652064	24652264	+	942.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1527.0	NM_026779	68591.0	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	4.90239063963075	4.71490828984721	5.00076440373453	5.04825654553781	4.84842467024582	4.54621927914735	4.49030260922526	4.7185914791668	-0.538505340361273	0.122374654737483	0.387633196099832
Merged-chr18-46184909-4	chr18	46184858	46185058	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178872, intron 4 of 9)	MTD|LTR|ERVL-MaLR	13860.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	5.87296690248878	5.35967507308236	5.1342046162011	5.60586118576987	5.00793786775757	5.08621116049932	5.57087227044452	5.35452949348008	-0.462443808352264	0.162635114752476	0.452001281986898
Merged-chr3-126610104-4	chr3	126610012	126610212	+	992.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	13161.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	5.0509622140952	4.94360881942861	4.83213360447458	5.373493060056	5.09430496076171	4.88615437858877	5.24142461190013	5.11386584846003	0.004931698498072	0.988166718086348	0.995382574001502
Merged-chr15-36782200-4	chr15	36782100	36782300	+	891.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356569, intron 3 of 6)	PB1D11|SINE|Alu	8732.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	4.41840710273059	4.2293938169006	4.0030832467944	4.26624099577584	4.43199041758973	4.07104664011681	4.09061050593873	4.59907208595076	0.204448057077648	0.623240698870082	0.838922840312846
Merged-chr17-56276268-3	chr17	56276141	56276341	+	889.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174989, intron 1 of 1)	intron (NM_174989, intron 1 of 1)	526.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	3.83038522021294	3.86277284400435	3.83092015930332	3.76233292633047	3.82077072229716	4.10376268414331	3.96342743951332	4.15377771519271	0.535455656488469	0.214740208995437	0.520694714225387
Merged-chr16-70315377-2	chr16	70315277	70315477	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 1 of 15)	intron (NM_028803, intron 1 of 15)	1428.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	2.68180170503127	2.78721487421681	2.6821406163535	2.4728281068194	2.67541198926884	2.65714279122857	2.54517506148348	2.40907860803893	-0.397031299674132	0.56593168484323	0.807783748011785
Merged-chr11-78044856-3	chr11	78044737	78044937	+	760.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284228, intron 1 of 11)	intron (NM_001284228, intron 1 of 11)	4530.0	NM_001284228	14252.0	Mm.130227	NM_008028	ENSMUSG00000061981	Flot2	AI573412|Esa|reggie-2	flotillin 2	protein-coding	3.31892145817127	3.45435261138006	3.49480844562888	2.79133718488284	3.66968569653226	3.37139321481164	3.72556908376883	3.64721766551499	1.08156452880703	0.0666133770267064	0.275139184319848
Merged-chr11-79259026-4	chr11	79258936	79259136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-4341.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	4.75550869960587	5.44016190621159	4.92278449238361	4.71505812664849	5.28937191170492	5.57889421821617	5.07996762322558	5.62325011985214	0.772959939423093	0.0273118328989075	0.157449498170514
Merged-chr13-24800083-4	chr13	24799977	24800177	+	967.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1580.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	4.30426283231621	4.0872891981577	4.58738921108093	4.26869315812885	4.14898194085864	4.38696913702971	4.45302518664286	4.5843020569462	0.18535324717958	0.642458272635934	0.849202179906279
Merged-chr2-75792577-4	chr2	75792463	75792663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39614.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	7.15559226136109	7.20900272318724	7.14511824674907	7.1570915125702	7.36499115137322	7.37960638237147	7.49103750481624	7.46076947223026	0.346511672370436	0.0455477649580446	0.218643401803929
Merged-chr7-120918253-2	chr7	120918153	120918353	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164096, intron 1 of 19)	CpG	509.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	4.8507659568252	4.32970195728226	4.52564340406495	3.80310276209309	4.64110654549855	4.4320676600535	4.65819178062307	4.81592234925703	0.495921935071467	0.25943032198536	0.571250530584125
Merged-chr7-54861421-1	chr7	54861321	54861521	+	831.75	f0_balb.idr	intron (NM_178705, intron 1 of 11)	intron (NM_178705, intron 1 of 11)	26176.0	NM_178705	233271.0	Mm.387344	NM_178705	ENSMUSG00000063297	Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding	3.47343987907237	3.67254083577495	3.32725374897358	3.53898245976105	2.91185920353851	2.85058242946239	2.96053021735225	2.96727024169578	-2.76753370649108	4.18216675973194e-05	0.000969018384736198
Merged-chr19-46524343-4	chr19	46524235	46524435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22687.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	5.88343145368386	5.92871350959171	5.53461164645218	5.25399986710298	5.81504908938372	5.653621550989	6.03560295418515	5.55915140066089	0.191943186653129	0.525240451242978	0.783229855070132
Merged-chr17-35219764-4	chr17	35219689	35219889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010909)	TTS (NM_010909)	-14438.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	6.16324969527588	6.72263147613896	6.10204933145762	5.78515761304597	6.42254005835903	6.61135338457789	6.07073151187964	5.83930553918742	0.0554424076405903	0.857214342952054	0.946239174364937
Merged-chr15-36684314-3	chr15	36684221	36684421	+	794.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-75348.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	3.89716503213669	3.52371339589909	3.31344484144552	3.48098738160131	3.59416124683685	3.78302091585626	3.69865446741189	3.49861655966486	0.251276446968927	0.618515267157935	0.836013334365748
Merged-chr4-3812691-4	chr4	3812578	3812778	+	940.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	22977.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	5.52268485332437	5.59718430404241	4.77238571072601	4.38999198647674	5.25818253551069	5.8428329682812	5.57007743563239	5.51969384453366	0.697088044941985	0.0834707002029818	0.314042019649455
Merged-chr17-44103961-4	chr17	44103882	44104082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357996, intron 1 of 3)	intron (NM_001357996, intron 1 of 3)	1826.0	NM_199016	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	6.60393265099174	6.33772666336944	6.52495076495048	6.76848927297642	6.81847337388992	6.54341318896246	6.42421070389631	6.55294559478279	0.0340378385276215	0.881117061993802	0.955322489265647
Merged-chr3-104524658-1	chr3	104524558	104524758	+	700.0	f0_balb.idr	Intergenic	Lx5c|LINE|L1	-12740.0	NM_001310698	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	3.32145952107825	3.05144463148101	3.32192328523185	3.46986735112907	3.18060626263046	3.13434813580247	3.08080279510206	3.08950608023717	-0.706293912531537	0.21361680063845	0.519120186160608
Merged-chr18-65582245-4	chr18	65582137	65582337	+	874.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361053)	promoter-TSS (NM_001361053)	-181.0	NM_001361053	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	4.29348850159859	4.33126923603309	4.10688342697983	4.70787595861607	4.07473469943759	3.8195099614415	4.27487231147623	4.49216686687962	-0.499820970703707	0.265393621923243	0.577001515467012
Merged-chr14-60251495-4	chr14	60251404	60251604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170591)	promoter-TSS (NM_170591)	-25.0	NM_001362439	71844.0	Mm.258051	NM_170591	ENSMUSG00000114797	Nupl1	1700017F11Rik|Nup58|mKIAA0410	nucleoporin like 1	protein-coding	8.51838108410285	8.90627469236948	8.5048654724878	8.54552665639525	8.72648676888862	8.7219849034454	8.78826364801146	8.3569793029291	0.0374457375988599	0.833258348053155	0.936237948428556
Merged-chr10-121264067-1	chr10	121263967	121264167	+	997.5	f0_balb.idr	3' UTR (NM_029057, exon 12 of 12)	3' UTR (NM_029057, exon 12 of 12)	47329.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	4.40454941035805	4.23951287515071	4.54397849171953	4.25022408188101	3.57552831288013	3.87095447811657	3.79288072728421	3.74620694856368	-1.73347974263805	0.000139894536223138	0.00269139762080708
Merged-chr19-42166357-3	chr19	42166246	42166446	+	902.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4221.0	NM_177319	319740.0	Mm.287359	NM_177319	ENSMUSG00000018820	Zfyve27	2210011N02Rik|9530077C24Rik|AI426636|AI593546|AI835681	zinc finger, FYVE domain containing 27	protein-coding	3.7723532436104	3.67363562156092	3.87063879568253	3.74495285883627	3.60720380640129	3.89241189641314	3.65287384943234	3.82043285637055	-0.0670127472033591	0.883638405192685	0.956324378403353
Merged-chr14-122039449-2	chr14	122039349	122039549	+	799.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4775.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	3.49947361539528	3.27422931813962	3.38440279274156	3.62200458728817	3.62062084718738	3.37014811558414	3.53980270955075	3.83508665937026	0.458167559803872	0.375815057353611	0.67864474636255
Merged-chr11-3188472-2	chr11	3188368	3188568	+	972.916626	f0_balb.idr|f0_c57.idr	intron (NM_030207, intron 2 of 32)	intron (NM_030207, intron 2 of 32)	4995.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.05356993360688	4.68965591619441	4.83019455456343	4.85117324805603	5.36477840861444	5.05025219200613	4.76620048972808	5.97755453145118	0.954585024225812	0.0128093066294744	0.0941699686613674
Merged-chr12-108991622-3	chr12	108991530	108991730	+	669.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 3 of 6)	intron (NM_177602, intron 3 of 6)	76587.0	NM_001163175	380785.0	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	3.11301640503239	2.89725474726931	3.00154539095934	3.1205356636171	2.65775842688688	2.77586142076556	2.80444884408228	3.1116522483961	-0.863295340728396	0.177355436302625	0.472719812791034
Merged-chr4-131838298-4	chr4	131838180	131838380	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011214)	promoter-TSS (NM_011214)	-2.0	NM_001083119	19273.0	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	6.1535719357078	6.07407148910773	5.26611773723001	5.89917280508335	5.97583171719698	5.93750384358367	6.00555450003226	6.11211396124683	0.181873638638466	0.521975102306698	0.7817525755964
Merged-chr2-91485021-5	chr2	91484960	91485160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 16 of 37)	L1_Rod|LINE|L1	27529.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	5.23167582152049	5.33547226188811	5.74625833278795	5.47141566050494	5.96674460138732	5.60430860114855	5.62007069801372	5.78819243088234	0.511119642890084	0.0694799239723971	0.281940112218873
Merged-chr15-32920794-4	chr15	32920725	32920925	+	965.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008304, exon 1 of 5)	5' UTR (NM_008304, exon 1 of 5)	102.0	NM_008304	15529.0	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding	4.72894162518845	4.48839281657407	4.65359091668925	4.95144907802252	4.40790857801875	4.66228008621856	4.46627590639464	4.9304403937039	-0.221422582290692	0.556167414834273	0.801835080198288
Merged-chr8-11556949-3	chr8	11556924	11557124	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011919, exon 1 of 2)	exon (NM_011919, exon 1 of 2)	567.0	NM_011919	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	3.96668844804805	4.10903658349736	4.61494252308306	4.10193995491028	4.12073703053414	3.97975561306764	4.18839402818661	3.91127311319042	-0.406054092867794	0.357331134099313	0.663494847536382
Merged-chr12-86146421-3	chr12	86146325	86146525	+	615.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029601, intron 4 of 7)	L1MA6|LINE|L1	-22916.0	NR_046081	328136.0	Mm.312050	NR_046081	ENSMUSG00000097543	Gm805	-	predicted gene 805	ncRNA	3.47234045899441	3.80358065074101	3.69881596507644	3.36238622809427	3.62482779545701	4.01456558493106	3.2644590528392	3.93261161745101	0.444737328726377	0.407688647849975	0.703908971101857
Merged-chr9-94278816-4	chr9	94278702	94278902	+	986.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	259279.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	4.56689863133152	4.68538869234783	4.83796031528945	4.97919153505745	4.67611196641095	4.35523072094983	4.81468859482641	4.90232782561234	-0.178612167267323	0.623711585102217	0.839108068902005
Merged-chr10-61275947-4	chr10	61275857	61276057	+	799.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2519.0	NM_001081127	237360.0	Mm.333252	NM_001081127	ENSMUSG00000059901	Adamts14	Adamts-14|TS14	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	protein-coding	3.87842511544581	3.68291146596185	4.01799116856987	3.65752286670398	3.90083292753215	3.78540005554237	3.70852708486564	4.05850025493484	0.189861994881192	0.678400346266541	0.868080722088702
Merged-chr5-16356048-4	chr5	16355955	16356155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110843, intron 29 of 38)	intron (NM_001110843, intron 29 of 38)	-197440.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	6.73376627212263	6.11359484262748	6.52178486614871	6.84310402426541	6.2899912787731	6.68153572007668	6.61404242730343	6.70185247536864	-0.024033730044191	0.924341839048766	0.971978099765165
Merged-chr13-40968786-4	chr13	40968694	40968894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155347, intron 1 of 4)	LTR41|LTR|ERVL	-32216.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	8.17414102769843	8.46314264107767	8.41286718920831	8.29623189280631	8.19324613026557	8.25186727065006	8.01585344106963	7.82174445512149	-0.328915136838101	0.0583335957604285	0.253859563012444
Merged-chr2-52784147-4	chr2	52784037	52784237	+	884.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41988.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	3.87391428557964	4.37594588250454	4.54215068084635	4.54787679975483	4.24048443259074	4.28001804380365	4.1358835586459	4.71224709414741	-0.0227593844577901	0.958671261213067	0.985248919859626
Merged-chr8-60973656-4	chr8	60973559	60973759	+	822.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007711, intron 1 of 11)	MTC|LTR|ERVL-MaLR	9652.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	4.09939868060964	4.13862000833485	3.89087384627741	4.48498772427347	4.39740237429378	3.82925287600102	4.26057998375297	4.2772666298034	0.0643460696883016	0.88717948015787	0.957666791297499
Merged-chr16-49855015-2	chr16	49854915	49855115	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010581)	promoter-TSS (NM_010581)	-639.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	7.15773073386028	6.723050869445	7.67366284583802	7.49933302775454	6.73378237034661	6.51955935847482	7.20898741579456	6.93472991517701	-0.604706004849858	0.0230780697530297	0.140663977303554
Merged-chr12-82220894-3	chr12	82220798	82220998	+	857.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	50882.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	3.63330109354662	4.10624808795007	3.68834604653453	3.48763356705646	3.77071857554511	3.91176420479398	3.6734013575316	3.38853297482634	-0.138940186983895	0.787844244222471	0.917806308666305
Merged-chr15-96568498-4	chr15	96568400	96568600	+	967.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR37-int|LTR|ERV1	73462.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	4.99976587312811	4.80583660532139	5.06467624616855	5.20656702850771	4.8170583458315	4.75454574580355	4.68443368567274	4.89466589067763	-0.497414825139615	0.132313026823167	0.405042403178192
Merged-chr17-45745616-2	chr17	45745516	45745716	+	660.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 1 of 4)	intron (NR_152153, intron 1 of 4)	11110.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	3.5851731688967	3.54232789320339	3.63875697809118	3.12805170033002	3.48142649420157	3.90781460181224	3.5709771160609	3.63660616282771	0.572765850937254	0.274674845682939	0.586413323654043
Merged-chr2-136678858-3	chr2	136678748	136678948	+	890.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-34602.0	NM_011428	20614.0	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	4.13687927086623	4.05332534429825	4.17651350522883	4.31864888677282	3.27375037913125	3.22961730714145	3.18493071876861	3.66207899087578	-2.81139566559645	1.26142489152521e-06	4.3187572079785e-05
Merged-chr8-122145044-3	chr8	122144929	122145129	+	776.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137112.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	3.45366870775537	3.78572199158631	4.18249321146645	3.86021812199276	3.04143226660123	3.00770945656736	3.25736627432153	3.05389307797389	-2.92869385814001	7.90257530981693e-06	0.000223213257133912
Merged-chr16-36827879-1	chr16	36827779	36827979	+	962.0	f0_balb.idr	promoter-TSS (NM_177128)	promoter-TSS (NM_177128)	380.0	NM_001113401	106389.0	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	3.69554986307661	3.84903949834354	3.69606402454353	3.83570480841795	3.45600895972288	3.91815465780748	3.45280961898551	3.84377074670491	-0.29594752695502	0.54528232114821	0.795814117754577
Merged-chr18-5760478-3	chr18	5760358	5760558	+	905.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360982, intron 4 of 7)	intron (NM_001360982, intron 4 of 7)	167811.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	3.77332142573133	3.88646287270688	3.93936806061133	3.69151357814053	2.81516842354374	3.05364102671066	3.00929607477548	3.09184428278196	-3.85412132626777	4.93100376354488e-07	1.83090201818133e-05
Merged-chr2-39065572-4	chr2	39065476	39065676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029793)	promoter-TSS (NM_029793)	-35.0	NM_029793	76899.0	Mm.131098	NM_029793	ENSMUSG00000026754	Golga1	0710001G09Rik|2210418B03Rik|AW107649|Golgi97|awag|golgin-97	golgi autoantigen, golgin subfamily a, 1	protein-coding	7.42427231168733	7.4182954561104	7.31162024808673	7.56758358179956	7.4012884967749	7.6980786129684	7.99428128431375	7.50643534458533	0.298812878606172	0.136544776099995	0.411042630338623
Merged-chr10-79958323-4	chr10	79958226	79958426	+	996.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1826.0	NM_175450	216156.0	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	5.06628989542618	4.56258659513939	4.69598377172018	4.77634974640968	4.64137590542177	4.83053334198309	4.4170526129776	4.90854632632315	-0.159062238346522	0.660082921437692	0.858704966919738
Merged-chr9-63803237-4	chr9	63803134	63803334	+	976.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45240.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	5.42854111071086	5.71262063248694	5.20904099752583	4.80902973208189	5.15356009147917	5.00522404859688	4.71984833057188	4.45196823357305	-0.873016384370608	0.0267604909280817	0.155441527610113
Merged-chr3-152928802-3	chr3	152928692	152928892	+	937.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	53415.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	2.86434364406824	2.86418364248911	2.86461559695114	2.64169106280172	3.52138519771256	4.05279727937807	4.05252403305401	3.87758656776491	4.35002061737518	2.3550579411949e-10	1.70529673648333e-08
Merged-chr5-21760122-2	chr5	21760022	21760222	+	881.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009584, intron 15 of 16)	intron (NM_009584, intron 15 of 16)	22962.0	NM_028431	73078.0	Mm.301655	NM_028431	ENSMUSG00000029017	Pmpcb	3110004O18Rik|MPP11|MPPB|MPPP52	peptidase (mitochondrial processing) beta	protein-coding	3.57882533269699	3.24517543165346	3.2389942504626	3.16949071208819	3.31831706964218	3.35320426947955	3.78843037229394	3.57718463306036	0.721275350798257	0.17897610778645	0.475006093387179
Merged-chr7-72109197-3	chr7	72109102	72109302	+	943.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024703, intron 19 of 22)	intron (NM_001024703, intron 19 of 22)	-147184.0	NR_126483	102640608.0	Mm.399138	NR_126483	ENSMUSG00000108480	Gm36633	-	predicted gene, 36633	ncRNA	4.5816705036293	4.84677732276576	4.88091001392969	5.1008601325462	3.58503793138204	3.91456946563678	4.01567326625313	3.71535382947806	-2.83435863575074	1.2739114233774e-09	8.04576230741618e-08
Merged-chr8-90795525-4	chr8	90795405	90795605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33330.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	6.20591102967039	5.89439565319014	5.78877674269056	6.01891463637862	5.92949963396496	6.17992837335475	6.36486818872459	6.14511303856166	0.262793368363192	0.291942727083065	0.604426741449839
Merged-chr6-29621065-2	chr6	29620965	29621165	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11216.0	NM_001347079	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	3.44488615795013	3.47054164547994	3.60782589060878	3.85683215911813	3.29622170529052	3.67211047189743	3.37433429084097	3.44354099591279	-0.564565189796399	0.282062647233821	0.594254538219845
Merged-chr13-24464595-4	chr13	24464508	24464708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111110, intron 14 of 16)	RMER5|LTR|ERV1	49486.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	6.10848800448239	6.06593009341968	6.24625203119538	5.87429331540328	6.55112699295939	6.57662280567714	5.90250341379715	5.63755654663236	0.250074252550255	0.403260764511251	0.700700507615324
Merged-chr12-17531059-2	chr12	17530980	17531180	+	852.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13793.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	3.12308345169168	3.34474920716936	3.19007020871731	2.91626065096174	3.81920801414187	3.36835697606093	3.35889109896163	3.62632249162284	1.50382409406395	0.00656426830614197	0.0579843700375874
Merged-chr12-111417587-4	chr12	111417490	111417690	+	956.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028807, exon 1 of 13)	5' UTR (NM_028807, exon 1 of 13)	145.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	4.31756414132179	3.80774185565039	4.27880850212613	3.55850974733913	4.18288018296967	3.92069695086405	4.21821163780236	4.00965027462726	0.19165669060796	0.691114594134521	0.874337409947942
Merged-chr12-54862917-4	chr12	54862797	54862997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007688)	promoter-TSS (NM_007688)	-20.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	6.98479950765409	6.97114410412598	7.30958747229232	7.24467385249257	6.77776886364878	7.01488118991141	7.01258452698079	6.96829718131884	-0.277311618775141	0.165657826456233	0.456520341709248
Merged-chr15-66536618-4	chr15	66536507	66536707	+	878.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172514, intron 7 of 9)	L1MC3|LINE|L1	24439.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	4.23089584207186	4.26215367886472	4.14456076578274	4.25058404525107	3.92821187615719	3.77822218445796	4.12633226450806	4.04876728391172	-0.657110291721707	0.115733144302041	0.37643296175916
Merged-chr16-21687525-4	chr16	21687431	21687631	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	Lx8|LINE|L1	7134.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	4.04547996178106	3.92612126143066	4.04608495559954	3.92466651850972	4.1880555917263	4.21619756381334	3.82865907818709	3.94654339814322	0.209509409536592	0.622357957296791	0.838325896870449
Merged-chr15-89196083-4	chr15	89195967	89196167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027081, intron 1 of 19)	CpG	407.0	NM_027081	69440.0	Mm.482128	NM_027081	ENSMUSG00000015377	Dennd6b	1700027J05Rik|AI414881|Fam116b	DENN/MADD domain containing 6B	protein-coding	5.37330664839136	5.2509232129177	5.09009081137106	5.3716716094765	5.0908549462774	5.23134248948147	5.52980215485321	5.3419076995182	0.031453970420171	0.916261804207141	0.968928821299362
Merged-chr11-88954966-4	chr11	88954869	88955069	+	980.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029023, intron 1 of 12)	intron (NM_029023, intron 1 of 12)	473.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	5.05959276445697	5.8190771370061	5.67746727088436	5.74100663676033	6.0335316346145	5.80072333374606	5.77081998408872	5.88654939524963	0.431710908705747	0.137650676736474	0.412714301576472
Merged-chr12-85596091-4	chr12	85595999	85596199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3006.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	6.74830501969595	6.53472203783674	6.27443944589535	6.4785593892481	6.87184956304314	6.83781995508077	6.65752988004701	6.81337778240354	0.405654084454821	0.0559537234069555	0.247589834538337
Merged-chr4-12483224-2	chr4	12483124	12483324	+	972.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-311209.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	3.52357831003259	3.69969467648144	3.63135439595242	3.17151104023586	3.8975394269314	3.58332604888055	3.33325591593488	3.57678524883233	0.339974232968668	0.528723305249561	0.785231446234849
Merged-chr6-117905482-4	chr6	117905385	117905585	+	858.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166432, intron 1 of 3)	intron (NM_001166432, intron 1 of 3)	-1297.0	NM_001166430	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	4.00857418520464	3.76230525736259	4.05531936583623	3.87443747485175	4.15462350031906	4.13237660940775	3.67789250749386	4.00674426414779	0.236042793889411	0.59552955121418	0.823993328411538
Merged-chr6-145245428-3	chr6	145245336	145245536	+	898.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021284, intron 2 of 4)	(CAAA)n|Simple_repeat|Simple_repeat	4795.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	3.88476394500114	3.48549697005259	3.35433049779999	3.2326563527881	4.12889013773303	4.27698781770198	3.81888950592148	3.97670462870064	1.65704306959793	0.000921521934332239	0.0126116150286165
Merged-chr19-34602102-4	chr19	34601999	34602199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101605)	promoter-TSS (NM_001101605)	-131.0	NM_001101605	667373.0	Mm.371956	NM_001101605	ENSMUSG00000079339	Ifit1bl1	Gm14446|Ifit1c	interferon induced protein with tetratricpeptide repeats 1B like 1	protein-coding	5.60464215276974	6.07554296111658	5.72505086123827	5.58562808568487	6.952282761966	6.54075434361671	6.63628760639117	6.45986070569954	1.38271407294267	4.74541126961126e-08	2.18623707935055e-06
Merged-chr19-11263162-4	chr19	11263082	11263282	+	797.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007641, intron 1 of 6)	intron (NM_007641, intron 1 of 6)	2969.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	3.93539641332322	3.99199947682814	3.98554658030418	3.89943488726119	4.11279204236323	4.2032739666083	3.76052049793361	4.07679686030744	0.269746301077343	0.526768325495976	0.783935324603861
Merged-chr19-10290570-7	chr19	10290445	10290645	+	994.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	14332.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	5.37136368008657	5.63405149559973	5.31170469754817	5.3688612351494	5.38409697492827	5.73618497942856	5.15602273190206	5.27666533435224	-0.0428511480298576	0.885634733938235	0.957045685546015
Merged-chr6-82909476-4	chr6	82909341	82909541	+	894.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-27588.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	3.89183751203944	3.81071210423992	4.28521317917279	4.03717200582796	3.48246544170284	3.43955867171	3.31284950573873	3.4561247821931	-1.89902404798568	0.000271857414728487	0.00468082702538921
Merged-chr11-3168096-1	chr11	3167996	3168196	+	1000.0	f1_balb.idr	intron (NM_030207, intron 7 of 32)	RLTR21|LTR|ERVK	25367.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	3.54914055253803	3.50836394151508	3.63769675317019	3.43859522517593	2.66090774422939	2.87216411227622	2.83259293202375	2.83906740348443	-3.92292258113029	3.66225841549639e-06	0.000112457244071017
Merged-chr3-105825836-4	chr3	105825722	105825922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10255.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	7.11203510802989	7.24101609300126	7.44526303988525	7.45356573716343	7.3885307003069	7.27853614000976	7.34096437198385	7.59053372418983	0.103769504760591	0.584723271468186	0.817725463637045
Merged-chr7-98816238-4	chr7	98816144	98816344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-18868.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	6.99049478586816	6.51479866382399	6.99171544121116	6.87840193701302	6.88443278644487	6.86787974746329	6.80191208955496	6.81793484036197	-0.0144840234697372	0.944608802270368	0.980106371692172
Merged-chr14-64883281-4	chr14	64883212	64883412	+	950.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 4 of 9)	L1MC1|LINE|L1	66545.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	4.97016186307371	4.60694748788393	5.58761872547577	5.55181232331359	4.50366307217757	4.82827873734798	4.9820936804558	5.3402135269219	-0.570269541299364	0.165750980106089	0.456684563481123
Merged-chr9-59659927-4	chr9	59659819	59660019	+	959.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253883, intron 1 of 10)	intron (NM_001253883, intron 1 of 10)	3551.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	4.59099849306257	4.86851166524851	4.63598580657564	4.19880734835959	5.10462011013504	5.08414887630689	5.13847129402281	5.24448217641139	1.1513593263446	0.00101916729542584	0.0136487881319126
Merged-chr1-72415787-4	chr1	72415686	72415886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	108365.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	5.79549179318345	5.52409559877071	6.14601724182943	6.39038148072852	5.91329671029673	5.86977342967632	6.20582904383953	5.79239639939567	-0.106875642570109	0.720052943565272	0.888119741205493
Merged-chr16-31756612-3	chr16	31756511	31756711	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252436, intron 1 of 22)	intron (NM_001252436, intron 1 of 22)	2261.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	4.41244503879007	4.42065416682209	4.19707383158703	4.92127168353977	3.89562254306794	3.94164524114938	4.08214675579335	4.14664778837379	-1.29987327279637	0.00318546462631447	0.033447143625378
Merged-chr9-95567176-4	chr9	95567073	95567273	+	923.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7356.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	4.82862031899365	4.85303533649426	4.75609774439137	4.86032852144671	4.77473821712137	4.72807761430079	4.73381381160145	4.67535896208685	-0.204434616494571	0.532470248675622	0.78817714997576
Merged-chr9-110527881-4	chr9	110527780	110527980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4717.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	5.34940017540935	5.02064303781013	5.12963730582555	5.26076172517381	5.56273234118618	5.40343486608244	5.40696246629086	5.22534173718411	0.384204424266889	0.188419405719597	0.486992724783917
Merged-chr10-60733921-4	chr10	60733801	60734001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	18881.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	5.97942389771193	5.83493761822985	6.22117518984099	6.65579099367242	5.68338711470305	5.77683241216234	6.09494836807385	5.78595397090865	-0.611003758378244	0.0370334022243667	0.191834694485714
Merged-chr17-13682808-4	chr17	13682704	13682904	+	970.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77737.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	4.68396992883509	4.7862525596476	4.50659624021826	4.89704407262209	4.8878436834233	4.81994637395824	5.02055199473206	5.32145905501445	0.565199577066916	0.103330802295415	0.353231350330677
Merged-chr14-63103228-4	chr14	63103129	63103329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19233.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	7.72239966329143	7.6478448603731	7.83922096169202	7.9549180652709	7.62693244231715	7.65214070612452	7.60290162098755	7.8191244825182	-0.165932839904043	0.339576700707819	0.648774648981312
Merged-chr10-127603170-2	chr10	127603064	127603264	+	993.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	17984.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	3.95388687858168	3.53310702696913	3.72160479007193	3.71155318870657	3.39646840630503	3.55285689351442	3.80329136900583	3.7694965285193	-0.306622104164725	0.5345169527829	0.789286995820758
Merged-chr11-5732880-4	chr11	5732810	5733010	+	972.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	intron (NM_001361588, intron 1 of 6)	8266.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	4.88342359915395	4.96617960020816	4.76919593471787	4.86898064047412	5.28764871305528	4.90520932296951	5.12258762890254	4.76610421539168	0.342274939240553	0.298201996489681	0.610320314800708
Merged-chr8-75063641-4	chr8	75063539	75063739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 12 of 15)	intron (NM_001136259, intron 12 of 15)	29953.0	NM_011622	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	7.1090687675558	7.56892581625542	7.74789651859035	7.54040964139825	7.37936022446309	7.41935990443598	7.65616448248831	7.45463280226844	-0.045312630615495	0.821354817600159	0.931627649722857
Merged-chr4-155235128-4	chr4	155235010	155235210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12575.0	NM_001357191	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	6.13207398609384	5.72843332562817	5.83315880936128	5.70965135898691	6.04117677726024	5.98486070956166	6.19299853407475	5.75434739688934	0.248273226112344	0.338415487837128	0.648017142470682
Merged-chr11-54755672-3	chr11	54755487	54755687	+	935.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 2 of 5)	intron (NM_178626, intron 2 of 5)	32116.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	3.44504393037909	3.61347455801164	3.61436933770422	3.85036887682851	3.38426953839163	3.49766040828809	3.70003106830521	3.71358273587098	-0.238381382108152	0.636684306200347	0.846411270237094
Merged-chr15-91703210-3	chr15	91703115	91703315	+	855.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025730, intron 11 of 50)	intron (NM_025730, intron 11 of 50)	29991.0	NM_025730	66725.0	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	4.34256346193654	4.41073384889748	4.34324021774544	4.5500467147639	3.84895305915832	4.23053697178041	4.36612281519129	4.64847208891162	-0.2927472102558	0.491894052358873	0.763232479244282
Merged-chr4-145286934-4	chr4	145286840	145287040	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009401, intron 8 of 12)	intron (NM_009401, intron 8 of 12)	28207.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	5.27199129967247	4.8537008591968	4.54614444871599	5.02258160373147	5.38797040389864	5.29237013249075	5.05908848006222	5.62302067663813	0.749987004333472	0.0273931079461656	0.157815785552418
Merged-chr13-45031931-4	chr13	45031835	45032035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29839.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	5.68588467078599	5.57248042898909	5.87194878182916	6.29673977215712	5.23889415307971	5.31735963232163	5.55481755481157	5.4661536685466	-0.864603860756881	0.00462098472766049	0.0448115901812188
Merged-chr1-7053577-3	chr1	7053466	7053666	+	840.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35354.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	2.9282579778477	2.96947713486994	3.2940062862625	3.30133090944931	3.27164071845053	3.2941055688405	3.17141966074527	3.12250908373624	0.280233734371213	0.627832544160923	0.841345115466837
Merged-chr4-74305406-4	chr4	74305277	74305477	+	822.62915	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 4 of 20)	B1_Mus1|SINE|Alu	53498.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	4.69982396665223	4.151354417122	4.24686235855752	3.90358738025629	4.26502361030733	4.3749966742525	4.27214210768929	4.15002814473775	-0.00434045417547354	0.992037793829089	0.996968078938269
Merged-chr4-48473463-4	chr4	48473359	48473559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355741)	promoter-TSS (NM_001355741)	4.0	NM_172304	269536.0	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	6.86129393938606	6.87023283751878	6.80688855096736	6.71585445834237	6.95859140267856	6.8012025416306	6.93159194303254	7.12573753155659	0.213676838802879	0.274670500075993	0.586413323654043
Merged-chr6-112490962-3	chr6	112490864	112491064	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1139.0	NM_001081147	18430.0	Mm.333310	NM_001081147	ENSMUSG00000049112	Oxtr	OTR	oxytocin receptor	protein-coding	3.73601894319382	3.54725192638891	3.78436647188977	3.76019866386876	3.66940603201625	3.69760540347902	3.39349900912677	3.46464529784006	-0.458219827733213	0.348212852778353	0.656098754477866
Merged-chr1-32249778-4	chr1	32249664	32249864	+	841.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133235, intron 2 of 8)	Lx6|LINE|L1	77042.0	NM_133235	170771.0	Mm.336594	NM_133235	ENSMUSG00000026058	Khdrbs2	6330586C16Rik|Slim1|Slm-1|Slm1|TG-RP135|Tg(LRRK2*R1441G)135Cjli|mSLM-1	KH domain containing, RNA binding, signal transduction associated 2	protein-coding	4.12780512687786	3.83080737343277	3.88611256684642	4.02312942704662	3.89728617523347	4.0619917451999	3.64114953001805	4.53579191953441	0.268031385849481	0.575920067157213	0.813264580807508
Merged-chr4-139289071-5	chr4	139289019	139289219	+	878.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 9 of 9)	intron (NM_001037761, intron 9 of 9)	21589.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	3.94019953891817	3.50797485443166	4.24873638930352	3.51129293314864	3.32982801728726	3.38910696128986	3.3304541784389	3.93823508419467	-0.957126207916429	0.09747753836702	0.342077291496629
Merged-chr15-57890640-4	chr15	57890586	57890786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024207, intron 1 of 7)	L2a|LINE|L2	1732.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	5.27698881685399	4.86542172398571	4.99250586350161	4.98175498617227	5.13375016656038	5.09526616585342	5.10220120669736	5.24553564707812	0.219750970738515	0.474415470051725	0.75165589989079
Merged-chr9-41445309-1	chr9	41445209	41445409	+	888.0	f0_balb.idr	intron (NR_131928, intron 3 of 4)	intron (NR_131928, intron 3 of 4)	-29584.0	NR_131931	73144.0	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	4.17446067170085	4.11602682995141	3.77772744711076	4.25485197478644	3.32711061240129	3.54166207429656	3.34430040549055	3.55046031293044	-2.13459913816076	4.13232200975199e-05	0.000958717563012181
Merged-chr10-96496882-3	chr10	96496770	96496970	+	946.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120131.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	4.48874256677833	3.9045409614225	4.8279984978793	4.55544433659049	3.44059184137501	3.59468246399164	3.53179804585203	4.12005916112514	-2.16312221315912	6.8503627320042e-05	0.00147445409404695
Merged-chr1-106220574-3	chr1	106220448	106220648	+	616.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	RSINE1|SINE|B4	48679.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	3.35510662207493	3.27570309594501	3.5541956771454	3.02259514567385	3.32920082065623	3.23194394558218	3.23105364722707	2.98384877215762	-0.383928933031611	0.509675259458893	0.774132584192743
Merged-chr19-9993217-4	chr19	9993134	9993334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011913, exon 3 of 12)	exon (NM_011913, exon 3 of 12)	8399.0	NM_011913	24115.0	Mm.31577	NM_011913	ENSMUSG00000037418	Best1	Bmd|Vmd2|mBest1	bestrophin 1	protein-coding	5.15466504401886	5.39360529768642	5.00971704252677	5.04036505482313	5.52911286790654	5.46181004629435	5.58542925930707	5.63382242249296	0.714859952508407	0.0122263553477025	0.0911266751093314
Merged-chr16-31234208-4	chr16	31234117	31234317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER112|DNA|hAT-Charlie	-32979.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	8.06751634497255	8.20027858890315	7.70771220525074	7.66756268500165	7.93671844886701	8.0424112510469	7.54740542153213	7.79909046156608	-0.106257575822621	0.605346636794811	0.828809276266572
Merged-chr10-88346110-4	chr10	88345990	88346190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 1 of 6)	intron (NM_027878, intron 1 of 6)	10985.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	6.40347897003167	6.81633245877734	6.78145596840535	6.4079221913851	6.04976304801162	6.24240229875343	6.31815744426737	6.3089277890803	-0.568053048091193	0.0165388936593442	0.112405415046162
Merged-chr10-68714505-4	chr10	68714387	68714587	+	742.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12B|LTR|ERVK	-9259.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	3.75815820109491	3.46442396565978	3.45816223008472	3.85452834524019	3.75524352005625	3.76674179370589	4.42504779581366	4.00083096974782	1.00676297226398	0.049342693729087	0.229823556925971
Merged-chr13-63250256-3	chr13	63250158	63250358	+	751.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	10229.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	3.47057120352874	3.39412167967288	3.67736219205654	4.12575066567985	3.15413158048037	3.19632509914908	3.45744737184412	3.35240053538512	-1.44371634281454	0.0127672632598304	0.0939482096114411
Merged-chr12-86833318-3	chr12	86833228	86833428	+	879.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	51486.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	2.86606607269537	2.70905881627468	2.74870653478607	2.71825581119438	2.43354715676247	2.72437999795422	2.61109539589195	2.74730747022127	-0.66052732119653	0.324065725885884	0.635585647052554
Merged-chr5-101938345-4	chr5	101938248	101938448	+	816.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 13 of 66)	B3|SINE|B2	131573.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.74435115794212	4.15339942939021	3.79932071252189	3.47187735548822	3.8972033399414	3.97363132305021	3.8355138476027	4.08262817689502	0.400227470186192	0.401424245652593	0.699015960008463
Merged-chr5-135616234-4	chr5	135616153	135616353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16401.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	5.04652143702677	5.31080079797354	4.97682811409384	5.27278358426269	5.13566918003233	4.91795156996587	5.02313343639183	5.32017228752505	-0.114651744908963	0.714472964830947	0.885860353325355
Merged-chr6-38941203-4	chr6	38941099	38941299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	22213.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	7.49361542595609	7.2377465678647	7.7681402583601	7.87925013052387	7.16159767345367	7.2344643922492	7.57238809059253	7.45215115321024	-0.349714753479167	0.10605856516542	0.358850720630767
Merged-chr13-26234905-4	chr13	26234816	26235016	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77490.0	NR_045933	73576.0	Mm.45473	NR_045933	ENSMUSG00000084811	1700092E19Rik	-	RIKEN cDNA 1700092E19 gene	ncRNA	5.40774355083536	5.10595317956555	5.23450445037995	5.63196573492298	5.02001472034996	5.01712107727274	5.40810215813965	5.10002161096695	-0.427017750219609	0.181087440714224	0.477552626527279
Merged-chr12-70969207-4	chr12	70969114	70969314	+	919.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5409.0	NM_001310595	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	5.03695029863365	5.31878922459374	4.88536472033815	4.58684085089741	5.56324570864034	5.52830925587324	4.86215748019971	5.6711709124956	0.861380283479492	0.0164892217979869	0.112207105005632
Merged-chr4-105268891-4	chr4	105268798	105268998	+	948.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111551.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.75055541360262	4.92753760916112	4.40001419916947	3.66175035515903	4.98358156096372	4.78093122887512	3.96727012073458	4.04030898502609	-0.0621447742817308	0.93717156502583	0.977223723991794
Merged-chr17-64592485-4	chr17	64592379	64592579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9170.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	7.69410904844978	7.7855432226333	8.1039049613924	7.76113539310774	7.86497638921043	7.92184658969054	7.46994174507015	7.68180249079594	-0.122921202897391	0.519405691548048	0.780089416553047
Merged-chr5-88509242-4	chr5	88509133	88509333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18664.0	NM_152839	16069.0	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	7.06572287347252	6.26998880859872	6.76985027170595	6.8002294105811	7.18053255395482	6.85663051031854	6.98460964947444	6.92869715018417	0.341560429951999	0.144534374507673	0.423680243842696
Merged-chr15-100060614-4	chr15	100060525	100060725	+	898.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	21961.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	4.96465577652899	4.77156381268039	4.96549470471347	4.82271975769665	5.34248287444324	4.47132812760234	4.60580690085904	4.74681235612572	-0.0417678195206145	0.913582772743017	0.967590813038646
Merged-chr15-95963243-4	chr15	95963146	95963346	+	971.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 17 of 19)	MIRc|SINE|MIR	116307.0	NR_126493	402773.0	Mm.210567	NM_001033483	ENSMUSG00000078925	D030018L15Rik	-	nuclear receptor coactivator 2 pseudogene	pseudo	5.03896279396088	5.28353459872257	5.54273955219508	5.91055864196288	5.40148368149289	5.10191599441529	5.66049979675023	5.37269172973703	-0.182660968352004	0.591406012262075	0.821603726809319
Merged-chr3-51662844-4	chr3	51662750	51662950	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174995, intron 1 of 4)	intron (NM_174995, intron 1 of 4)	1671.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	5.16430134750213	5.23410262925984	4.80829184998615	5.37017309565891	5.10876780533195	4.9032257554601	5.07649081810106	5.13014938627555	-0.220797343737715	0.492256617717771	0.763376447368555
Merged-chr17-70990608-4	chr17	70990548	70990748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023402)	promoter-TSS (NM_023402)	-132.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	6.13330612240731	6.56157267119343	7.12662083791362	6.15216658441579	6.17497021966181	6.51345647829573	6.24679508399599	6.52194976626218	-0.268832360915471	0.358457298522839	0.664413367722986
Merged-chr7-111079863-3	chr7	111079770	111079970	+	843.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013507, intron 4 of 21)	intron (NM_013507, intron 4 of 21)	3160.0	NM_001040131	13690.0	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	3.8054902507992	4.50072978195365	3.91109893096099	3.10325510052244	4.19835673508355	3.75397423122252	3.73503369368257	4.05179527429503	0.0320718512972184	0.956715043172787	0.984724224578049
Merged-chr5-33352158-4	chr5	33352058	33352258	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021500, intron 1 of 8)	ID_B1|SINE|B4	16586.0	NM_021500	59003.0	Mm.138617	NM_021500	ENSMUSG00000079562	Maea	1110030D19Rik|EMP|Gid9	macrophage erythroblast attacher	protein-coding	5.21762066581169	5.17686057488596	4.8412251729616	5.3604704429423	5.53745886446492	5.80507689300634	5.34578103626287	5.45307199036244	0.645132467591173	0.0361856628389889	0.18911900236169
Merged-chr11-83580987-4	chr11	83580891	83581091	+	798.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1070.0	NR_036453	100504464.0	Mm.341706	NR_036452	ENSMUSG00000051832	E230016K23Rik	-	RIKEN cDNA E230016K23 gene	ncRNA	4.64232117421922	4.70303641545995	4.34162884628059	3.98679532829973	4.15299989092093	4.23593806031823	3.93149190062576	4.1564762728707	-0.775030164238807	0.0811745611851035	0.309190333623542
Merged-chr15-80260836-4	chr15	80260746	80260946	+	839.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175109, exon 4 of 4)	3' UTR (NM_175109, exon 4 of 4)	3460.0	NM_175109	66538.0	Mm.39485	NM_175109	ENSMUSG00000051518	Rps19bp1	2510038A11Rik|AI604923|S19BP	ribosomal protein S19 binding protein 1	protein-coding	4.1427294045758	3.8895186564151	4.1433655135186	3.78458547270091	4.35433656738013	4.35825424164581	4.07919515981737	3.99681908366675	0.590670639573396	0.166448031121754	0.457772281102559
Merged-chr3-65956617-3	chr3	65956512	65956712	+	876.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355433, intron 3 of 11)	intron (NM_001355433, intron 3 of 11)	1637.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	3.4496875768452	3.70046810331118	3.45011330903676	3.58368953432717	3.42073232847954	3.6256820492239	3.887179647228	3.76860714460981	0.398828381635497	0.420861544742679	0.713588262204841
Merged-chr12-35067839-3	chr12	35067738	35067938	+	795.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	20649.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	3.68509063325203	3.54081335065359	3.78028495097272	3.53640579272545	3.35372829579159	3.64540336263707	3.40071190511678	3.52702601972878	-0.501548230892609	0.314267099932771	0.626308038585359
Merged-chr19-46573256-4	chr19	46573135	46573335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019718)	promoter-TSS (NM_019718)	-53.0	NM_019718	56350.0	Mm.22085	NM_019718	ENSMUSG00000025035	Arl3	-	ADP-ribosylation factor-like 3	protein-coding	8.20342091461728	8.49224092002451	8.24047337176106	8.03046740788837	8.33161797377335	8.61856121200884	8.38130445145528	8.16879779220307	0.171442873752752	0.345041525652775	0.653357561969643
Merged-chr7-106240703-1	chr7	106240603	106240803	+	577.333313	f0_balb.idr	Intergenic	RLTR13B2|LTR|ERVK	-25363.0	NM_029000	74558.0	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	3.63980839962167	3.74458144375684	3.47787905673533	3.46304040790498	3.51608615403905	3.53330201283851	3.46496832517852	3.68801583073639	-0.0941452777864438	0.847556706668979	0.942335253076034
Merged-chr5-3430694-4	chr5	3430607	3430807	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	86814.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	5.87916065614464	6.43502813937479	5.72807148315008	5.03563125714298	6.30190590717114	6.21349409057489	6.21837198541957	6.05402008886717	0.530637335461284	0.118770379310334	0.381289772187003
Merged-chr14-56885405-4	chr14	56885294	56885494	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1209.0	NM_177627	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	5.39607122505468	5.66737837521814	5.13985184850352	4.83085218337793	5.64028537316703	5.68231233190424	5.0790564803009	5.72405675848496	0.474794833198168	0.167977618032665	0.459915036621355
Merged-chr3-105900892-4	chr3	105900784	105900984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-3537.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	6.05949324232611	6.19464795034724	5.87817405631438	6.2560520609082	6.23470450285275	5.75669401274819	6.32859512629908	6.09796841840117	0.0191798105805222	0.940001302039377	0.978363933407335
Merged-chr15-34181823-4	chr15	34181717	34181917	+	961.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56209.0	NM_033521	114128.0	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	4.84508520404297	5.02977366387447	4.64939110960874	4.80981738580918	5.04920883834702	4.64708116712377	4.82294568864146	5.13368138162581	0.188174420630233	0.579335802774732	0.815309880376499
Merged-chr8-123248751-4	chr8	123248634	123248834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028200, intron 5 of 14)	intron (NM_028200, intron 5 of 14)	-5461.0	NM_020497	57247.0	Mm.379084	NM_020497	ENSMUSG00000001065	Zfp276	AW048709|D8Ertd370e|D8Ertd377e|Znf276	zinc finger protein (C2H2 type) 276	protein-coding	5.61332166920952	5.32795157076036	5.42701837571559	5.68459858570114	5.29051444462478	5.2046610562408	5.45593618942427	5.68268164722221	-0.196151753523969	0.502585838799114	0.769776320401967
Merged-chr7-120865201-3	chr7	120865132	120865332	+	808.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267710, intron 2 of 17)	intron (NM_001267710, intron 2 of 17)	14043.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	3.31679238675846	3.18934455078863	3.21137060715175	3.33403705768656	3.03048719363683	2.85790579949848	3.02395373076604	3.09428591346123	-1.0662968660292	0.0672427245707497	0.276678992555719
Merged-chr1-155058734-4	chr1	155058624	155058824	+	932.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24540.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	4.63398024417197	4.25404066742047	3.95175592961049	4.31839115882509	4.41217656447526	4.3493496509706	4.15363097991226	4.88571520815295	0.388214526797677	0.369143182948179	0.673491314105063
Merged-chr13-54590139-4	chr13	54590016	54590216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025933)	promoter-TSS (NM_025933)	-42.0	NM_178605	28126.0	Mm.439993	NM_178605	ENSMUSG00000025869	Nop16	AA409471|D13Wsu177e	NOP16 nucleolar protein	protein-coding	7.52821277749833	7.7012405224484	7.17643501653283	7.3334400408879	7.5931561396188	7.8989538574722	7.48330525416768	7.30758422063967	0.184157878989111	0.383186668125923	0.685091024076536
Merged-chr15-25637937-4	chr15	25637816	25638016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	15366.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	8.02545465049824	8.30615722208563	7.97931443362446	8.1211258413105	8.03202814410467	8.04113943184883	8.0276104711929	7.66163403021256	-0.211826596898209	0.23234772481715	0.541946192758711
Merged-chr6-92940984-3	chr6	92940881	92941081	+	951.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	399.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	4.60854753450394	4.72715639537315	5.07898984013055	5.13372681094246	3.21827324199277	3.65283968804533	3.5093863249118	3.4409974147288	-5.2829703286315	2.46686053517e-11	2.08785571977248e-09
Merged-chr13-36324884-4	chr13	36324780	36324980	+	889.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 3 of 5)	intron (NM_001039189, intron 3 of 5)	207237.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	4.1448954777481	4.11332652152441	4.56980907210234	4.23417471725187	4.60919082500232	4.16594048156166	4.26922113781963	4.49260306484792	0.313906549680845	0.43753885645495	0.725737614792881
Merged-chr6-4904217-3	chr6	4904113	4904313	+	929.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 1 of 15)	intron (NM_181595, intron 1 of 15)	893.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	3.90935539934839	4.01596633203448	4.05810558279492	4.44834919116018	4.02036230104144	4.08326248408892	3.99365272986387	3.74079899544458	-0.469457839756349	0.30134779069851	0.613372444784937
Merged-chr8-70003266-4	chr8	70003170	70003370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6886.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	7.15580277400978	7.11691499457764	6.94595650601861	6.97867875998785	7.59301947793232	7.40051423014352	7.12110403607922	7.05713683898222	0.368042943641287	0.0750568506412369	0.295650860223179
Merged-chr12-59219006-4	chr12	59218939	59219139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033156, exon 1 of 4)	exon (NM_001033156, exon 1 of 4)	444.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	4.98738031660831	4.98891589535324	5.42869053828428	5.24996070806468	5.2820646382055	5.57336244539109	5.10531524839935	5.19230697636671	0.214407618111994	0.493196656168727	0.764078058767225
Merged-chr11-115707439-4	chr11	115707354	115707554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008163, intron 1 of 5)	intron (NM_008163, intron 1 of 5)	1143.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	5.46039166031161	5.23392781301764	5.61680881356916	5.59518938168938	5.37327261708212	5.3952890270338	5.19344621725219	5.42964980386038	-0.246329250660055	0.388716491473603	0.689075530869355
Merged-chr13-24641636-3	chr13	24641538	24641738	+	683.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080381, intron 1 of 14)	intron (NM_001080381, intron 1 of 14)	2990.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	3.46947379863872	3.29574743494105	3.57668888705208	3.37896627115742	3.54106742946434	3.40475083888789	3.34168614183608	3.80717450391655	0.359677957322386	0.482784070016098	0.757421686487144
Merged-chr19-37127155-4	chr19	37126990	37127190	+	879.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290829, intron 3 of 9)	B1_Mur1|SINE|Alu	-46753.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	3.48329643260725	3.93409010295486	3.76422717815908	3.94730341508035	3.68669046839254	3.66047727778953	3.69796903840653	3.76206659888602	-0.313871222450566	0.510302003675514	0.774671963475449
Merged-chr10-80940671-7	chr10	80940536	80940736	+	951.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10545.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	3.92962437220473	4.3167353273268	3.76804777705961	3.97545586086587	3.77749400653065	4.24410433379045	3.86261911537542	4.02562978403712	-0.0876479360239272	0.847934596627558	0.942563001161167
Merged-chr11-31949580-4	chr11	31949497	31949697	+	769.012512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16036.0	NM_026262	67592.0	Mm.78654	NM_026262	ENSMUSG00000020299	4930524B15Rik	-	RIKEN cDNA 4930524B15 gene	protein-coding	3.36007261112923	3.07623269310822	3.42052298774406	3.35328156289189	3.95373577689751	3.65055550119555	3.40761196275559	3.68284409617403	1.25536471067578	0.0172506680783618	0.115783621230525
Merged-chr1-92775500-3	chr1	92775397	92775597	+	798.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56148.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	3.13873783090115	3.27630282906528	3.41251492406938	3.33613843955851	2.96105690973521	2.90033854275324	3.12802679584563	3.36037105568622	-0.77423761972431	0.187748255447615	0.486148389337764
Merged-chr2-128058055-4	chr2	128057964	128058164	+	980.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028765, intron 14 of 17)	intron (NM_028765, intron 14 of 17)	-67974.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	5.14410819810452	5.10252079522749	4.97386585551472	4.80663965346692	5.33114663024004	5.28623993576907	5.32435865282318	5.00659653413054	0.471366098469877	0.127268798801474	0.396918276733565
Merged-chr11-117824147-2	chr11	117824047	117824247	+	991.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271729, intron 2 of 5)	intron (NM_001271729, intron 2 of 5)	-1772.0	NM_027827	71562.0	Mm.273958	NM_027827	ENSMUSG00000017718	Afmid	9030621K19Rik|Ammd|FKF|KFA|Kf|formylase	arylformamidase	protein-coding	3.24972981951709	3.02937584866507	3.2501740794652	2.94961037300565	3.13003372761804	3.30538307274415	3.34373152114879	3.19095786364644	0.492125954280961	0.375703350521534	0.678595291948235
Merged-chr2-30441235-4	chr2	30441126	30441326	+	993.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138748, intron 8 of 9)	intron (NM_138748, intron 8 of 9)	25176.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	4.58851131579349	4.64796181631166	4.6278745066978	4.61784504692282	4.35192627990294	4.2489175300649	4.60613598660891	4.69860463955275	-0.301974951340582	0.40912582858509	0.704822890162842
Merged-chr6-91509551-4	chr6	91509469	91509669	+	897.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009531, intron 2 of 15)	intron (NM_009531, intron 2 of 15)	6319.0	NM_009531	22591.0	Mm.2806	NM_009531	ENSMUSG00000030094	Xpc	-	xeroderma pigmentosum, complementation group C	protein-coding	4.30518667716633	4.53736987204922	4.78415690548274	4.21914890216927	4.6406995206622	4.38532188836848	4.72739479395024	4.48304177011665	0.232558373264029	0.547854078413744	0.797066990585641
Merged-chr13-8680646-4	chr13	8680548	8680748	+	816.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 4 of 10)	intron (NR_110345, intron 4 of 10)	190396.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	4.96774479912622	4.94572898596976	5.51778975764941	5.65088906046495	4.43869839982247	4.50273052427649	4.54791936580847	4.65590388309373	-1.59999943430139	1.79116071870684e-05	0.000462769614507566
Merged-chr8-117055321-4	chr8	117055240	117055440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 13 of 42)	MIR|SINE|MIR	27109.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	7.92579043037307	7.70173241514642	7.79480248088862	8.08433398231253	7.67895177675352	7.94874346162043	7.79507018837197	7.71773831976855	-0.139779252018114	0.433842792318111	0.723256357491443
Merged-chr16-15887891-3	chr16	15887813	15888013	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007679, exon 1 of 1)	exon (NM_007679, exon 1 of 1)	627.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	4.62433159804775	4.26639648507292	5.01104970439922	4.67988883442378	4.25914479497785	4.8403557320046	4.60341902029597	5.17642177224562	0.186953253160925	0.656687266510823	0.856808720588296
Merged-chr2-84634400-4	chr2	84634359	84634559	+	901.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	(TC)n|Simple_repeat|Simple_repeat	15021.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	3.99153828611748	4.06244613741707	3.59727263399026	3.85032580231515	3.53258058814141	3.45864888759469	3.58379168508533	3.80768126278992	-0.874266990087155	0.0748744278480906	0.295147970305103
Merged-chr2-166771603-5	chr2	166771482	166771682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22185.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	5.49698482904605	5.91687141428589	5.88366715668399	5.65021035114989	5.81251692706287	6.1216053225838	5.40951637794947	5.78760947346065	0.0976306893366814	0.731384271994381	0.893597464662159
Merged-chr7-102032039-4	chr7	102031955	102032155	+	965.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 4 of 8)	intron (NM_029211, intron 4 of 8)	-13900.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	4.65559330666005	4.8693697247525	5.47790801899394	5.11272006939998	5.00476053548197	4.83593244097076	4.79988731355449	5.03421558963002	-0.272819440151263	0.441075734728733	0.728379224700288
Merged-chr1-178407019-2	chr1	178406919	178407119	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026626, intron 1 of 6)	intron (NM_026626, intron 1 of 6)	1001.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	3.67120873327094	3.58196462739105	3.72362885045323	3.47692742810481	3.85080228855545	3.73503308662681	3.65697787797212	3.77127199514254	0.474925791628711	0.304482134654657	0.617066911687048
Merged-chr14-33194421-4	chr14	33194338	33194538	+	960.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9372.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	4.76739508899167	4.8740573739897	5.13706355005304	5.07931876759575	4.81942964422799	4.73591017015746	4.66640266550491	4.8766661629119	-0.407033278008903	0.219957086431188	0.527609241046694
Merged-chr8-46336512-4	chr8	46336409	46336609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41838.0	NM_173789	234219.0	Mm.145631	NM_173789	ENSMUSG00000047171	Helt	A830086M02|Hesl|Heslike|Mgn|megane	helt bHLH transcription factor	protein-coding	6.54663430453641	6.75841766630399	6.89479562249573	6.86491633814321	7.1088502943998	6.61788899556065	7.00821654460751	7.06196574601143	0.268200748075176	0.210716329542559	0.515327060959003
Merged-chr12-8638895-4	chr12	8638790	8638990	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35244.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	4.96561866275157	5.42546812389736	4.96644041998529	4.69998056900047	5.25849265570625	5.1425219243628	5.17465521605712	5.22698413236427	0.326955360258838	0.327100076477639	0.63867529942819
Merged-chr9-55255184-4	chr9	55255079	55255279	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	LTR37-int|LTR|ERV1	28446.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	5.39628388521425	5.66285116273626	5.44970458342187	5.41015813116286	4.7875519377175	5.13090404513577	4.58726436388585	4.83015663334893	-1.21836916285273	0.000144601610420193	0.0027698057126208
Merged-chr11-101466194-4	chr11	101466099	101466299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012037)	promoter-TSS (NM_012037)	0.0	NM_012037	26949.0	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	6.46226666477801	6.06433314466168	5.80748403549578	6.26353523020189	5.93478776137166	6.36230888646614	5.92454906987447	6.10337064747536	-0.138025062966357	0.601812911926231	0.827277737697899
Merged-chr17-88435521-4	chr17	88435438	88435638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5166.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	5.41052852169553	5.64270885083671	5.70497677395722	5.43736250647344	5.63449525110403	5.52609283450461	5.60314293529405	5.49456889341926	0.0397568500471597	0.882497634821404	0.95575354370667
Merged-chr17-37483681-3	chr17	37483554	37483754	+	963.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347387)	promoter-TSS (NM_001347387)	-100.0	NM_001347387	14990.0	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	4.15454544328692	4.74817332519712	4.26073571195025	4.03866908778468	5.15593753272007	4.82568730945831	4.51383497214171	4.49026368710343	1.00447207868926	0.0174784941760441	0.116839006100361
Merged-chr2-32150934-4	chr2	32150835	32151035	+	732.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159634)	promoter-TSS (NM_001159634)	-213.0	NM_172661	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	4.14060352951758	4.11004496185889	3.75028285421502	3.90840429943644	4.13219016015253	3.869588452958	3.84421872941023	3.90888877217313	-0.084074109355592	0.849638926382524	0.943176062710257
Merged-chr12-80791949-5	chr12	80791831	80792031	+	826.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	1399.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	3.96638928007634	3.62428739589902	3.91856549767137	3.547304264778	4.05348561462771	4.18357822825709	3.85206465694441	4.01114525465463	0.758795183571289	0.0937090301989981	0.334855339316405
Merged-chr18-23803882-4	chr18	23803788	23803988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153058)	promoter-TSS (NM_153058)	-82.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	9.10382607529795	9.22028260398935	9.50436989490632	9.22632942442305	9.04841383257136	9.2663880216975	9.23316683108001	8.9843606909909	-0.165700797186661	0.298092259885862	0.610270372983396
Merged-chr7-28375697-4	chr7	28375603	28375803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-3041.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	8.10012697592471	8.03484165831916	8.45356670563987	8.27607372454368	8.19952585902072	8.07629986149754	8.46661574948242	8.0633812387125	-0.017869357151032	0.921653937415291	0.9709178534782
Merged-chr13-20728257-2	chr13	20728159	20728359	+	765.166626	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65854.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	3.52427604646021	3.35388851114445	3.52471305495192	3.77113991279416	3.96140774484455	3.7013063584584	3.91820646271974	3.97667771502148	0.967376371086789	0.0491671369157685	0.229275919714851
Merged-chr9-100376826-3	chr9	100376726	100376926	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109647.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	4.94579299854066	5.0923431899079	4.88155382332203	5.07676450728104	4.25798580318409	4.00537555552482	4.68003475666565	4.49137320484343	-1.36218648868594	0.000377652663732161	0.00613160103827361
Merged-chr11-50269419-2	chr11	50269319	50269519	+	702.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	B2_Mm2|SINE|B2	22917.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	3.07327138599653	3.29304094505641	3.47571559243986	3.05427324683991	3.4004449282371	3.3137222644352	3.30542753286057	3.25965169880967	0.35643019208994	0.514388836215853	0.776966017760127
Merged-chr14-121987486-4	chr14	121987396	121987596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 6 of 8)	intron (NM_026861, intron 6 of 8)	-22303.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	6.37913430313616	6.18951405315505	6.51363681628041	6.3881777325773	6.44044521193049	6.21719474131703	6.66969109370589	5.96370551259322	-0.0249407002590698	0.919972023154587	0.970406583631903
Merged-chr13-42246035-6	chr13	42245932	42246132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55444.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	4.76128969277699	5.06356414577836	5.22350917840998	5.13028073611556	5.02557811256003	5.48047526015703	4.93584599804437	5.12731081612216	0.172135006458923	0.599043970846592	0.826146116839364
Merged-chr11-23696063-4	chr11	23695954	23696154	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 4 of 17)	intron (NM_001033654, intron 4 of 17)	30078.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	5.62611726298853	5.18584838215361	5.46518252322842	5.65027929045031	5.70982960646085	5.3902444652798	5.5986448525766	5.7436368705145	0.203978076106255	0.474095995648958	0.751607118426792
Merged-chr4-46360061-4	chr4	46359961	46360161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD2|LINE|L1	15867.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	6.18754446343418	6.44202800700806	5.94461120512825	5.95492764056219	6.15019207363641	6.53377984762899	6.39405303274735	6.65056871412417	0.4433661023138	0.0799783782744406	0.306343485292816
Merged-chr10-68723830-4	chr10	68723746	68723946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177794)	promoter-TSS (NM_177794)	100.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	6.19184879184436	6.17125706404231	6.08106219284193	6.45236893678513	6.85660321073653	6.62218874838255	7.10565847990351	6.81715471833887	0.88735502975051	0.000120187908663175	0.00236256701207846
Merged-chr7-84151388-4	chr7	84151233	84151433	+	871.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133722, exon 1 of 3)	exon (NM_133722, exon 1 of 3)	560.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	3.91967158080918	3.51011623122261	4.32769866128363	4.03762286217263	4.00625784005486	4.2434895939214	4.05303635598005	4.3248063059448	0.466630646892916	0.321325680482289	0.633072426125134
Merged-chr9-83728675-3	chr9	83728577	83728777	+	715.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37202.0	NR_046066	100039222.0	Mm.405596	NR_046066	ENSMUSG00000100155	Gm2109	-	predicted gene 2109	ncRNA	3.70892358661614	3.89131200498046	3.7094052310539	4.24584453070749	3.81049114152002	3.70720897634288	3.85501456325276	4.25750632071315	-0.0037250255084358	0.993979885523839	0.997739983081298
Merged-chr17-15564387-4	chr17	15564268	15564468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1045.0	NM_144809	213389.0	Mm.215162	NM_144809	ENSMUSG00000051977	Prdm9	BC012016|Dsbc1|G1-419-29|Meisetz|PRDM9-B|Rcr1|repro7	PR domain containing 9	protein-coding	8.75143142445262	8.52013233620845	8.50100500216259	8.79379456014647	8.64638433673969	8.47897560382117	8.70501057010188	8.52017227934199	-0.0752177373472011	0.637341745540413	0.846731771204454
Merged-chr2-102978002-4	chr2	102977895	102978095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76330.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	6.51287400965846	6.72181500584929	6.92563876025357	6.4103468213477	6.5725140939784	6.78702124392568	6.26218059621364	6.52605058070759	-0.142712400649998	0.547598756974104	0.796923572329989
Merged-chr12-32795894-4	chr12	32795771	32795971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24464.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	7.6105737979337	7.66610107481469	7.61186240689694	7.7238420993207	7.73247122869698	7.77148614792591	7.50337917076691	7.60665053337484	0.00118907232052165	0.99439446145578	0.997969705205021
Merged-chr5-32997876-4	chr5	32997744	32997944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20972.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	6.95569917675631	6.89473575931451	7.49796610836401	7.19505353536103	6.75124497234482	6.52424389640292	6.9216655123857	6.74408639725963	-0.574972433953389	0.0104832736870852	0.0816846127830366
Merged-chr5-140608921-4	chr5	140608821	140609021	+	928.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008494, intron 1 of 7)	intron (NM_008494, intron 1 of 7)	1580.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	4.34827849098873	4.6242007450364	5.02214892293799	4.79755251068945	4.39664984856276	4.4309263684469	4.018979521857	4.39210608569326	-0.910326463990445	0.0240201491035771	0.144579119894555
Merged-chr4-43249374-4	chr4	43249279	43249479	+	961.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081413, intron 24 of 39)	intron (NM_001081413, intron 24 of 39)	-17780.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	6.29243547977473	6.3666856786269	6.34215632239616	6.35126517228711	5.33686729072359	5.19849874261678	5.33154275179443	5.35454790140936	-1.69298086283744	3.60993981474077e-11	2.95686888461948e-09
Merged-chr3-58982967-2	chr3	58982867	58983067	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41B|LTR|ERVL	-24011.0	NM_177855	329650.0	Mm.240059	NM_177855	ENSMUSG00000056476	Med12l	A130035F20|A630079M02|AU044581|TRALPUSH	mediator complex subunit 12-like	protein-coding	2.50909470883598	2.46572696086611	2.44934346629361	2.2500742960763	2.38648274933637	2.2763113642633	2.17140342316033	2.17563394788026	-0.967854659774303	0.213358797761169	0.518723430195792
Merged-chr19-9931283-4	chr19	9931175	9931375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31742.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	7.96820944988895	7.92941820489364	8.12265433424131	7.71193601710998	7.84356171479377	7.92384163954528	7.83969239604464	7.81235011542284	-0.0998991572776165	0.562298049005392	0.805562766994875
Merged-chr8-125282697-4	chr8	125282581	125282781	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	210152.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	5.28545535674826	5.41453044055747	5.72728390977498	5.60901011359499	5.13410859824276	5.15131603672448	5.19707742522592	5.28270775270341	-0.603349005106785	0.0386352194043567	0.197282157295068
Merged-chr9-107268202-4	chr9	107268108	107268308	+	816.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	21188.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	3.97562895555338	3.86934561334915	4.16271827264581	4.39792569479221	4.12640943847452	3.93628327578554	3.95983589439124	4.02307167632046	-0.304899980534006	0.490661055759093	0.76237724871089
Merged-chr16-93832200-4	chr16	93832101	93832301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045529)	promoter-TSS (NM_001045529)	80.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	8.41793777306649	8.60222901915294	8.32062264511047	8.30812898901868	8.75334227628624	8.80556684003992	8.69461488789727	8.45017713078473	0.336996502141576	0.0398529988342405	0.201298368153733
Merged-chr11-80137001-3	chr11	80136891	80137091	+	976.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183275, exon 4 of 4)	exon (NM_183275, exon 4 of 4)	5162.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	4.14246197294	4.23987844186029	4.43445717713888	4.4584691930559	3.91053383305887	3.88739892217215	3.97829991594067	4.27355994655467	-0.808399252209856	0.0557758439102801	0.24721768439441
Merged-chr9-102479141-2	chr9	102479041	102479241	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26997.0	NM_024291	16716.0	Mm.101692	NM_024291	ENSMUSG00000035606	Ky	CD1|D9Mgc44e|ky	kyphoscoliosis peptidase	protein-coding	2.66035853370342	2.91449637782277	2.73015775151833	2.71164250038252	2.8425075735467	3.02809488067761	2.90804722629458	2.85775217888388	0.689066404151263	0.260155772981028	0.571924258091621
Merged-chr4-88351129-4	chr4	88350988	88351188	+	866.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 28 of 43)	intron (NM_001081184, intron 28 of 43)	87838.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	4.43674705544286	3.93026676314931	4.39863015090102	4.48085092616197	4.13352860964356	4.26206112196997	4.07018876540728	4.13412363771241	-0.460553628437421	0.269599579909373	0.581265068287797
Merged-chr9-111083751-3	chr9	111083653	111083853	+	890.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26235.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	3.63363607651562	3.69647171789564	4.26460268705288	4.00835121921878	3.53166177152051	3.42325821518916	3.97009850551452	3.79565972601482	-0.669436349786229	0.19585729178767	0.496725581341956
Merged-chr14-22085586-4	chr14	22085482	22085682	+	967.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 2 of 6)	intron (NM_028275, intron 2 of 6)	65870.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	4.72636558292041	4.87188681406004	5.19433216466258	5.26589336266894	5.23877459941441	5.02444953283711	5.52567718747806	4.92203889463616	0.297506558667634	0.39077329496355	0.690691871625004
Merged-chr12-102387443-4	chr12	102387334	102387534	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 8 of 9)	intron (NM_177620, intron 8 of 9)	52379.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	4.94579348862533	4.85109446902773	4.57572925526068	4.83569288903584	5.16754446245564	5.46020336148186	5.23599290429526	4.90694729013273	0.757231745403266	0.0205276375150705	0.130237695934148
Merged-chr8-126571252-4	chr8	126571126	126571326	+	961.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22210.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.25630328605402	5.41961303847757	5.2572015265909	5.47171820762917	5.28105860034771	5.20124984896363	4.84790275104274	5.05731701159169	-0.45944132910963	0.132246078725123	0.404866393014003
Merged-chr9-106903958-4	chr9	106903865	106904065	+	844.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153413, intron 49 of 52)	intron (NM_153413, intron 49 of 52)	-12027.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	3.71632224979348	3.93876876269473	3.59594164645906	3.72558080172092	4.10647252267514	3.77733662309081	4.32362863371565	4.11021249914315	0.946777035268198	0.0356692276740116	0.187538776525962
Merged-chr2-50689634-2	chr2	50689534	50689734	+	640.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-220050.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	2.89033089050891	2.73716598963103	2.83069972900145	2.63364109782129	3.22094563959068	2.66276987568894	2.69340988494923	2.70049893012412	0.362586005302981	0.591422455563143	0.821610534663016
Merged-chr12-46821607-4	chr12	46821550	46821750	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2875.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	4.99822626766715	5.01401668693319	5.44664280551392	5.71838721055127	4.74419329119049	4.81315245659594	4.9749022991921	5.0986366334354	-0.831550525783294	0.0186215929972375	0.122095280761825
Merged-chr5-32745893-4	chr5	32745801	32746001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347332, intron 1 of 8)	intron (NM_001347332, intron 1 of 8)	441.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	6.72896285291738	6.684935424895	6.43432521886901	6.20600782424937	6.54765746923471	6.78957251666515	6.62478666642372	6.01909344649168	0.00632567030113585	0.980645710777498	0.992836655251142
Merged-chr15-25832757-4	chr15	25832650	25832850	+	940.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10548.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	4.9641467105052	4.40142234937939	4.79282472331098	5.14030767675339	4.59792455677877	4.68292950113448	4.90830893751978	4.71374401665461	-0.288321414123937	0.439507326669248	0.727375479666823
Merged-chr10-117215948-2	chr10	117215848	117216048	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_026570, intron 6 of 6)	intron (NM_026570, intron 6 of 6)	8559.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	5.99025926734284	5.9818393563986	6.19138489359505	5.87858959417517	5.84399405838941	5.57663414737491	6.33104606717013	6.00852321600025	-0.0606358691006335	0.822783447889997	0.932185203682946
Merged-chr4-133463308-3	chr4	133463216	133463416	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16817.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	5.54465014425807	5.66058345926999	6.30824948918978	6.01691850623212	4.19374626655788	4.25318144252912	4.15968578825601	4.3009713291957	-3.55735972197595	6.29893818857891e-18	1.59555915062227e-15
Merged-chr10-86977497-4	chr10	86977387	86977587	+	916.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 5 of 68)	intron (NM_138673, intron 5 of 68)	30455.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	4.60716935151555	4.1483800293752	4.64355746610803	4.88245775566183	4.31288189896163	3.9648989274926	4.30644544089834	4.22958121499182	-0.919776051888889	0.0302972722800556	0.16834734922889
Merged-chr5-76954695-3	chr5	76954594	76954794	+	685.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356974, intron 1 of 8)	RMER6A|LTR|ERVK	-3116.0	NM_172146	231327.0	Mm.202337	NM_172146	ENSMUSG00000029246	Ppat	5730454C12Rik|AA408689|AA675351|AI507113|C79945	phosphoribosyl pyrophosphate amidotransferase	protein-coding	3.15784809372742	2.99490629660076	2.77286506542948	3.18821881516319	2.94522899694695	3.08809629740497	3.14586228277744	3.21085286602704	0.207756200084308	0.72971189833429	0.892780143895226
Merged-chr1-136346103-4	chr1	136346000	136346200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347110)	promoter-TSS (NM_001347110)	4.0	NM_001347109	67886.0	Mm.144143	NM_001081360	ENSMUSG00000041570	Camsap2	1600013L13Rik|4930541M15Rik|Camsap1l1|mKIAA1078	calmodulin regulated spectrin-associated protein family, member 2	protein-coding	6.70024338910846	6.24356604075741	6.7288582939574	6.49892281850217	6.38462333761934	5.96535858173303	6.38996869201298	6.4354695375371	-0.351479825334396	0.146005778534938	0.425889079187705
Merged-chr5-135887873-4	chr5	135887780	135887980	+	936.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013560)	promoter-TSS (NM_013560)	-39.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	4.73964800083386	4.71339323369068	4.77572905814377	4.6759911884692	4.58164007876102	4.54611350465371	4.48489884135266	4.41336553169186	-0.462843969402205	0.183806046065367	0.480997446797308
Merged-chr14-66280296-4	chr14	66280191	66280391	+	927.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	761.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	4.29783338632088	4.3579009509975	3.90867830576954	4.32188368080258	4.60228093593523	3.91142547370111	4.00130691393629	4.20892470894941	-0.0327198469743503	0.942418837279345	0.979090543673559
Merged-chr5-100705940-4	chr5	100705842	100706042	+	937.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152803, intron 3 of 11)	Tigger1|DNA|TcMar-Tigger	13774.0	NM_152803	15442.0	Mm.265786	NM_152803	ENSMUSG00000035273	Hpse	HSE1|Hpa|Hpr1	heparanase	protein-coding	4.44882836881684	4.76499705233851	4.12566010158224	4.51611467128262	4.26160976295234	4.19857149672948	3.9434161251539	4.7691767460431	-0.365153096585248	0.410452380623445	0.705844024072775
Merged-chr7-90026199-4	chr7	90026097	90026297	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2962.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	4.12345265779691	4.99556138072644	4.57147310494603	3.80106958022376	4.69695463895048	4.4983517489589	4.30217182810626	4.0674044700543	-0.0923727834726312	0.852119033293784	0.944279808675088
Merged-chr2-32353339-4	chr2	32353243	32353443	+	979.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_125959)	promoter-TSS (NR_125959)	-14.0	NM_010065	13429.0	Mm.44736	NM_010065	ENSMUSG00000026825	Dnm1	AI838169|Dnm|Ftfl|mKIAA4093	dynamin 1	protein-coding	5.59941178049883	5.70004486636272	4.91800891558007	5.3780166199438	5.85832303937295	6.0776709335595	5.64863804363312	5.64834793824443	0.648984113200434	0.0337571534913642	0.181152022644889
Merged-chr3-122274297-4	chr3	122274195	122274395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153806)	promoter-TSS (NM_153806)	-119.0	NM_153806	99480.0	Mm.398647	NM_153806	ENSMUSG00000039756	Dnttip2	4930588M11Rik|AA408582|AU014960|HSU15552	deoxynucleotidyltransferase, terminal, interacting protein 2	protein-coding	8.60125440464081	8.86777482005703	8.75248375251689	9.01426126920409	8.71680623952659	8.66206010970223	8.87956591339706	8.53013321170568	-0.150441123691935	0.36647386298938	0.670899490592347
Merged-chr5-99360349-4	chr5	99360235	99360435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-107408.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.71114963741921	6.59092589173095	6.59599518446767	6.97682382293997	6.457064828707	6.10987080611396	5.99739508401412	6.15939034755199	-0.7873668565343	0.0010675168904432	0.0141815574365167
Merged-chr15-76805988-4	chr15	76805885	76806085	+	820.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	L1M4|LINE|L1	12185.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	3.59684538618687	3.78289832372336	3.90145722396644	3.80800538362431	3.83514852257745	3.71369014703264	3.52631472487331	3.70485505087587	-0.22044037206914	0.637717713767123	0.846915109954476
Merged-chr2-11544559-4	chr2	11544465	11544665	+	954.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	9364.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	4.55589107345637	4.39947904344894	4.67241970194572	4.85761043955824	4.73585572209048	4.13909559973479	4.49501648883348	4.63194334739998	-0.250376241094802	0.524014708146589	0.782704938068323
Merged-chr16-33922447-4	chr16	33922359	33922559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	44579.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	7.62194324357487	7.18058177564125	8.01772051577242	7.78689431307751	7.5445431300773	7.52323823066575	7.56858869240912	7.79395904535752	-0.0999663707462679	0.645084350202785	0.850651357276743
Merged-chr1-170282617-4	chr1	170282527	170282727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012009, intron 2 of 3)	intron (NM_012009, intron 2 of 3)	5309.0	NR_153837	26904.0	Mm.57009	NM_012009	ENSMUSG00000102418	Sh2d1b1	EAT-2|EAT-2A|Eat2|Eat2a|Sh2d1b	SH2 domain containing 1B1	protein-coding	6.45500976625562	5.96559689630683	6.42346602846528	6.98696040774691	5.6706593504841	5.77074930639245	6.28735658414645	6.22214503143726	-0.772071344149355	0.0122985506815822	0.0914636442340761
Merged-chr3-96596000-2	chr3	96595900	96596100	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024851)	promoter-TSS (NM_001024851)	-636.0	NM_001024851	545554.0	Mm.267664	NM_001024851	ENSMUSG00000049097	Ankrd34a	AW060394|Ankrd34	ankyrin repeat domain 34A	protein-coding	2.7966107275033	2.69567671741055	2.85554097388421	2.47004710351427	2.45855165183035	2.63865609677478	2.59555101548634	2.90974782646379	-0.236752051445493	0.732851668015723	0.894223761060293
Merged-chr4-88726804-4	chr4	88726710	88726910	+	849.9916380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-4302.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	4.16132777879528	4.12216008214046	4.46155727083937	4.67024813059706	4.2720815979288	4.1322766114286	4.23625840960909	4.11039876361175	-0.481861536838619	0.249845033034731	0.56092983870739
Merged-chr4-142082916-4	chr4	142082812	142083012	+	923.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-1386.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	4.94340576714302	4.66157834945945	4.52158035186912	4.84973703033073	5.08227481991855	4.65179455157279	4.70834321545712	4.9730576818309	0.241511342596346	0.49169937084226	0.763163312629334
Merged-chr5-24425827-2	chr5	24425727	24425927	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009207, intron 1 of 22)	intron (NM_009207, intron 1 of 22)	595.0	NM_009207	20535.0	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding	3.43720665916859	3.5072245535115	3.69826973916914	3.40599203741274	3.56297632623756	3.60958260096265	3.42488978374479	3.43586384962189	0.00874922560092976	0.985923605777342	0.994788540667462
Merged-chr16-4913163-4	chr16	4913055	4913255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 4 of 17)	intron (NM_001357062, intron 4 of 17)	-25956.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	7.63275769612956	7.74452719316697	7.43814307141407	7.81018992065373	7.77568482678484	7.82861349491112	8.05297262439079	7.38149748819784	0.145848624955222	0.471096403389073	0.749705558503237
Merged-chr14-20929289-4	chr14	20929190	20929390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009502)	promoter-TSS (NM_009502)	-108.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	7.97541215608143	7.86370729259617	7.5878918086355	7.71795906098629	7.59208616884473	7.80923032123713	7.70952057312777	7.33647788121937	-0.223687524982846	0.23761667363724	0.547779380627817
Merged-chr15-78599341-4	chr15	78599234	78599434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 1 of 12)	intron (NM_028195, intron 1 of 12)	2287.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	6.13617353674348	6.3918082892713	5.94679765772895	6.42877088229424	5.9503849416568	5.95386360228157	5.6100007135447	5.84782045820854	-0.63174913308505	0.0142577317841505	0.101182769126011
Merged-chr3-52030376-3	chr3	52030310	52030510	+	834.833374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	74596.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	3.4881078522981	3.59966187359745	3.92766167255967	3.73630935411696	3.22249672640599	3.66256931285931	3.47547671225624	3.54355039611033	-0.72080987623764	0.163864782624166	0.453728189028694
Merged-chr2-83673305-4	chr2	83673207	83673407	+	920.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28729.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	5.06262978041397	5.30587766388826	4.8951152552458	5.41100895063954	4.4424339233193	4.83750147483423	4.75971110607664	4.47103369232834	-1.15796980060953	0.00105314578821575	0.0140246705443235
Merged-chr17-32635116-4	chr17	32635027	32635227	+	988.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001100187, exon 13 of 13)	exon (NM_001100187, exon 13 of 13)	13808.0	NM_001100187	677156.0	Mm.484117	NM_001100187	ENSMUSG00000062464	Cyp4f37	Gm9705	cytochrome P450, family 4, subfamily f, polypeptide 37	protein-coding	4.9048908683582	4.94480979788783	4.83425565629956	4.76390579552576	4.97905954375796	4.77001185891779	5.07321889716397	4.54451249517178	0.0139628531960307	0.967155096265295	0.988468417345796
Merged-chr3-36066089-4	chr3	36066016	36066216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172678, exon 1 of 18)	exon (NM_172678, exon 1 of 18)	137.0	NM_172678	229211.0	Mm.260997	NM_172678	ENSMUSG00000027710	Acad9	2600017P15Rik|4732402K02|C630012L17Rik|NPD002	acyl-Coenzyme A dehydrogenase family, member 9	protein-coding	6.81070931542626	7.06500923942566	7.25488393075343	7.10231250850898	6.8141495423238	6.7711585704057	6.96303480431921	6.80707141144988	-0.319422546825394	0.110796847801505	0.367733322282167
Merged-chr18-80408783-4	chr18	80408688	80408888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	-44534.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	7.10559897452471	7.08062814578712	7.23189174991658	7.41758076396176	6.28673714277633	6.05468342614299	6.41044145724495	6.49340094496087	-1.28335184398608	3.73444391695253e-09	2.15758103542828e-07
Merged-chr11-75636721-4	chr11	75636622	75636822	+	995.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008916, intron 3 of 11)	intron (NM_008916, intron 3 of 11)	5702.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	5.61180905487061	5.23529230445324	4.81403877568853	5.07227326897219	5.19775354450835	5.07589058522301	5.53802339619831	5.04403190455279	0.038249901189056	0.910672335515574	0.966752366437927
Merged-chr11-70018537-3	chr11	70018447	70018647	+	907.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109752)	promoter-TSS (NM_001109752)	-58.0	NM_001109752	13385.0	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs large MAGUK scaffold protein 4	protein-coding	3.00324813255713	3.05504690346997	3.00361783081344	2.82833085850826	3.18800245622612	3.17391673158823	2.79794505299752	3.06187669741562	0.410928830791118	0.489040528563162	0.761571656414145
Merged-chr11-101759731-3	chr11	101759609	101759809	+	950.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144831, intron 18 of 22)	intron (NM_144831, intron 18 of 22)	25601.0	NM_008815	18612.0	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	3.95404477253542	4.07100687799172	4.21800149907764	4.20862907996332	3.59671566322152	3.80370738960201	3.88870789424573	3.85098397170574	-0.965691122832224	0.0304904211289117	0.169024741864081
Merged-chr15-75060718-2	chr15	75060618	75060818	+	978.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-11881.0	NM_001252056	17067.0	Mm.1583	NM_010741	ENSMUSG00000079018	Ly6c1	AA682074|AA959465|Ly-6C|Ly-6C1|Ly6c	lymphocyte antigen 6 complex, locus C1	protein-coding	2.36427245767944	2.3766803367916	2.44086759427483	2.25290529855718	2.70960616846925	2.88033867948008	2.81349139141851	2.70824128996466	2.35901205060421	0.000604152206699071	0.00898703237630788
Merged-chr13-23895437-2	chr13	23895337	23895537	+	953.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_121611, exon 13 of 13)	non-coding (NR_121611, exon 13 of 13)	19570.0	NM_177016	319848.0	Mm.97959	NM_177016	ENSMUSG00000021336	Slc17a4	9130214H05Rik	solute carrier family 17 (sodium phosphate), member 4	protein-coding	3.33517114671857	3.26494541705972	3.27955936630699	3.40955136871359	3.30391429933392	3.20387173545416	3.47458338329462	3.09470093367139	-0.181430122600873	0.736645514634692	0.896043754662457
Merged-chr2-147083675-4	chr2	147083596	147083796	+	774.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023504)	TTS (NM_023504)	1649.0	NM_023504	228731.0	Mm.315498	NM_023504	ENSMUSG00000054160	Nkx2-4	1700001P03Rik|Nkx-2.4|tinman	NK2 homeobox 4	protein-coding	3.43164853753125	3.82100367127082	3.75146773400386	2.75453921442415	3.56332489700982	3.72275929618019	3.3580278845126	3.65118508539275	0.199455026885416	0.755264136327014	0.903634896880696
Merged-chr3-95134011-4	chr3	95133918	95134118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153121)	promoter-TSS (NM_153121)	-6.0	NM_001163573	69269.0	Mm.182944	NM_027013	ENSMUSG00000092607	Scnm1	3110001I17Rik|Scnm1-ps	sodium channel modifier 1	protein-coding	6.52924404461484	6.59175082513312	6.1563249405939	6.31774030326659	6.46876878479408	6.68990274579868	6.77068975708086	6.38917771936817	0.259827056082484	0.258162281604098	0.569968613835775
Merged-chr5-43861304-4	chr5	43861184	43861384	+	735.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7525.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	4.37491337444489	4.22530876309731	4.52960753225086	4.3630474953335	3.98828368169437	4.54566961926648	3.98156169243745	4.04885930639987	-0.544764991584584	0.1950661378511	0.495808192619035
Merged-chr7-110616023-4	chr7	110615937	110616137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1117.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	5.5497833989141	5.7746201159345	5.71224600637987	5.74044524360796	5.99652210242746	5.33454386007065	6.17500890145203	5.68268934452372	0.235902217252609	0.417053445055852	0.710824365826122
Merged-chr1-161195879-7	chr1	161195802	161196002	+	903.669067	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36588.0	NM_001195189	100502590.0	Mm.449990	NM_001195189	ENSMUSG00000049160	Tex50	4930469G21Rik	testis expressed 50	protein-coding	3.92099951714705	4.12499583966438	4.42696840228105	3.63795886884225	3.63823560260773	4.14654570938681	3.79878114942267	4.11069575294022	-0.31345810641849	0.527726508068595	0.784541137405011
Merged-chr2-25193597-4	chr2	25193499	25193699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_146115, exon 2 of 2)	3' UTR (NM_146115, exon 2 of 2)	3214.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	6.11538643568725	6.13898977121099	6.05231822422084	5.91620829639963	6.46599574669019	6.2924887432653	6.22252818873176	6.35737354550075	0.452685016384687	0.0462805898762155	0.221028321712234
Merged-chr3-69598368-5	chr3	69598245	69598445	+	876.6333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020026, intron 1 of 2)	intron (NM_020026, intron 1 of 2)	615.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	4.01666313893067	3.84941940710613	3.87738076722052	3.90361457921344	3.33669165807606	3.72314942029821	3.86078695509913	4.09995387724889	-0.385254003638645	0.43860582257272	0.72660996706474
Merged-chr7-80035257-3	chr7	80035140	80035340	+	831.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	9012.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	3.30564596945396	3.29054794578191	3.41611794300841	3.64090663154792	3.29879186930157	3.29596790451246	3.34932688203139	3.05215559355954	-0.638742344216921	0.24804319515804	0.559137354284593
Merged-chr16-33683908-4	chr16	33683834	33684034	+	887.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175256)	promoter-TSS (NM_175256)	-532.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	3.61994989960899	3.75374616262219	3.85162967076884	4.21312090988311	4.03995514238627	4.42344088832589	3.72676219880957	3.95131384554597	0.434851979815941	0.382758362299681	0.684720839179898
Merged-chr15-73732228-4	chr15	73732124	73732324	+	992.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	7294.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	4.91910847277655	4.76324585219696	4.98756536599386	4.63729931186921	5.00737788393564	4.86851186066471	4.96325281090427	4.88143347316075	0.241333061385272	0.460534856364109	0.742687499720882
Merged-chr6-106793724-4	chr6	106793632	106793832	+	834.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021449, intron 4 of 10)	intron (NM_021449, intron 4 of 10)	6355.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	3.76725028072083	3.725467607362	4.01847873879079	3.64485940429007	4.34477507487051	3.94312889013719	3.90722394880535	3.87168963395676	0.71448500028056	0.117126694205634	0.378565658581541
Merged-chr3-84391014-3	chr3	84390925	84391125	+	620.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-11104.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	3.57182415256388	3.67863075928099	3.5723370396266	3.56415440365895	3.29779854891697	3.11811682603927	3.45277972881326	3.51839204477127	-0.832223789077792	0.11242479957005	0.370699254578988
Merged-chr11-95828320-4	chr11	95828195	95828395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153104, intron 1 of 2)	MIRb|SINE|MIR	3795.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	5.10108811515877	5.16586534642715	5.36724855904973	4.96230144064083	4.96016444465437	4.94568130068282	5.14048512649678	5.16237857138664	-0.173044810756023	0.580904137945552	0.816043625532665
Merged-chr18-75262700-8	chr18	75262605	75262805	+	906.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 16 of 16)	intron (NM_027727, intron 16 of 16)	34612.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	2.82036271746591	2.84060893735595	2.68625719492907	2.73386144069471	2.83174803918091	3.10888480448652	2.93207729467824	2.94169813715644	0.830331448030355	0.169048551349741	0.46161486940974
Merged-chr4-151051351-4	chr4	151051241	151051441	+	896.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009498, intron 2 of 4)	L1MB5|LINE|L1	6612.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	4.20466236181961	3.76408978821639	4.1593913382774	4.43725777730578	4.13558302570773	4.18677357011078	4.35356373916339	4.28972075586376	0.156218126409642	0.719498380240301	0.888022825078143
Merged-chr10-112991345-2	chr10	112991245	112991445	+	796.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62319.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	3.81226899632694	3.525763839156	3.81282963109129	3.90798843618849	3.56696565409269	3.46189059667335	3.79661587459706	4.03392440843255	-0.135377912466103	0.785093471088435	0.916416605365842
Merged-chr17-37028872-4	chr17	37028762	37028962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5464.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	7.40668608076977	7.3662503199281	7.89044440950717	7.44246500419339	7.31625094728527	7.53446171998365	7.53858751657009	7.58797118428845	-0.060141425873583	0.762404641195858	0.906947438049302
Merged-chr1-165680556-4	chr1	165680436	165680636	+	982.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	27558.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	6.69336162288372	7.03643095214036	6.5750765903396	6.51822150710643	6.47327396716087	6.85603028370107	6.09731667744296	5.5800136148158	-0.560149103659341	0.0719291041378484	0.288133361665142
Merged-chr15-73067621-4	chr15	73067529	73067729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6425.0	NM_001164643	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	9.164725807788	9.31609214845356	9.51820817950542	9.08795525857351	9.27403380429321	9.28130780289016	9.41354689914326	9.14764722466273	0.0042333275350124	0.978813301564049	0.992516114931184
Merged-chr10-111009986-4	chr10	111009901	111010101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172554)	promoter-TSS (NM_172554)	8.0	NM_001359622	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	7.35068971474763	7.18319890898436	7.2374458960903	7.16956887156088	7.15230499760107	7.17556262893273	7.35441422774821	7.46079455241924	0.0765616451795771	0.67990021778474	0.86857902618052
Merged-chr6-17788197-4	chr6	17788091	17788291	+	670.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	RMER1C|Other|Other	39021.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	3.98798570022904	3.97009021925166	3.69408382378649	3.57540648421069	3.89792304499311	3.69619775299587	3.67971265618156	3.84753606970646	-0.0589601969215699	0.900567262324932	0.963161804192488
Merged-chr12-111432324-4	chr12	111432208	111432408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028807)	TTS (NM_028807)	-10353.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	6.38023752223313	6.53113701556338	6.21895010780055	6.25513642515758	6.43953021601703	5.82585971665898	5.93323423427316	6.02811089642862	-0.38493151943755	0.13637715408663	0.41091739052877
Merged-chr18-82505164-4	chr18	82505046	82505246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 2 of 3)	intron (NM_001025245, intron 2 of 3)	30023.0	NM_010777	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	7.60389567701969	7.73354680682281	7.74589812803217	7.48431184753266	7.52754169309754	7.63405796158084	7.929347032394	7.63452034292231	0.0619919471761263	0.735167649566895	0.895431262597044
Merged-chr4-155831550-4	chr4	155831372	155831572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_025338, exon 1 of 4)	5' UTR (NM_025338, exon 1 of 4)	203.0	NM_025338	66077.0	Mm.28999	NM_025338	ENSMUSG00000065990	Aurkaip1	0610033H09Rik|Aip|Akip|MRP-S38	aurora kinase A interacting protein 1	protein-coding	6.32768444303357	6.4109430807389	6.41945466191119	6.26708146716674	6.42895080323876	6.67900782590754	6.56505890460808	6.57873388381407	0.307525034839215	0.147097190895041	0.42788514025699
Merged-chr6-113654297-4	chr6	113654180	113654380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	15813.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	8.00004474391795	8.22639920062984	8.06000095233186	7.70879277102024	7.82464641879861	7.94494730147241	8.10734783214462	7.44323665496302	-0.200246370900068	0.334803545822808	0.645228068776801
Merged-chr7-102619813-3	chr7	102619692	102619892	+	780.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR34B_MM|LTR|ERVK	-4805.0	NM_207621	233578.0	Mm.377251	NM_207621	ENSMUSG00000073972	Olfr553	MOR25-2	olfactory receptor 553	protein-coding	3.31566420256415	3.50563902923043	3.43635247601206	3.95429557819711	3.38765183829885	3.55038875479954	3.4791380370802	3.43457890034723	-0.441020202061633	0.416958016553513	0.710744672757979
Merged-chr7-90213648-1	chr7	90213548	90213748	+	742.0	f0_c57.idr	Intergenic	Intergenic	51784.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	3.3129589336074	3.15304889208766	3.37575843967979	3.77089060438018	3.41707484217024	3.76839097477122	3.47877555519691	3.78739800049945	0.575527842322294	0.308689534450175	0.621052386235592
Merged-chr6-58640579-4	chr6	58640529	58640729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011920, intron 1 of 15)	CpG	43957.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	6.2262555144873	6.32519667102579	6.56723323084593	6.56955373156836	6.13997461368773	6.259856736829	6.15605403597803	5.98780823252771	-0.454757191840282	0.0495845072727143	0.230602786224406
Merged-chr19-34724812-4	chr19	34724721	34724921	+	633.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172838, intron 1 of 6)	intron (NM_172838, intron 1 of 6)	22290.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	3.85770038765658	3.66614127693373	3.63841021323974	4.12790778291139	3.90261549864808	3.97884834794839	4.11118360086779	3.75089002496623	0.236860785493006	0.617974849579866	0.835822295464892
Merged-chr7-28444147-4	chr7	28444039	28444239	+	948.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039192, intron 4 of 6)	intron (NM_001039192, intron 4 of 6)	3202.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	4.72806954063494	4.8279457324487	4.33107398082733	4.4807522175063	4.87084991021449	4.82465071098273	4.88220625639285	4.86935009945091	0.549726991955137	0.112432889653938	0.37070875730395
Merged-chr9-63613774-4	chr9	63613676	63613876	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	11130.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	4.66003195287767	4.38460922767007	4.95000119525546	5.27921904609068	4.53979121681497	4.41891676851399	4.79045996146889	4.94659101647038	-0.390771296573907	0.338238625505256	0.647834865991405
Merged-chr2-153115892-4	chr2	153115781	153115981	+	844.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	7413.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	3.86631948043645	3.67597630397619	4.19063780795815	4.17665820175778	3.85328803746958	3.9336107059191	4.04392590823899	4.0133796881695	-0.120162237669252	0.790417656005802	0.918834223462576
Merged-chr15-25556412-4	chr15	25556317	25556517	+	932.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66133.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	4.80398481884234	4.59454767535567	4.76745747742282	4.68177105426217	4.95258817693953	4.82366694861634	4.9520754048562	4.80158640133994	0.370112398124506	0.25591178446044	0.567480136643187
Merged-chr4-116556111-6	chr4	116556027	116556227	+	951.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177670)	promoter-TSS (NM_177670)	-184.0	NM_177670	230657.0	Mm.291484	NM_177670	ENSMUSG00000055900	Tmem69	A630048M13Rik	transmembrane protein 69	protein-coding	3.53163061658569	3.49935958025495	3.95519418826866	3.43003904530562	3.45322912135273	3.59137024361443	3.57220300982371	3.47327841505397	-0.290675085372547	0.568387121540618	0.808665348796528
Merged-chr1-180945498-3	chr1	180945396	180945596	+	832.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 1 of 22)	intron (NM_144794, intron 1 of 22)	2978.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	4.022430020995	4.31370691772242	4.02303851117139	4.10438089618341	3.61019678751668	3.8827959881595	3.5638336854168	4.31490825510752	-0.672135540524991	0.168641991547785	0.460920383592684
Merged-chr17-84329682-4	chr17	84329595	84329795	+	712.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 28 of 37)	intron (NM_183021, intron 28 of 37)	136513.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	4.29304638441482	4.60443314120801	4.12094996191628	3.53885429157798	3.87200124383867	3.87296979223721	3.90523545779029	4.24989680520065	-0.543038872162388	0.286656522722171	0.598350475018457
Merged-chr2-180705325-4	chr2	180705227	180705427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291432, intron 1 of 5)	intron (NM_001291432, intron 1 of 5)	-3225.0	NM_175551	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	5.39292037347458	5.11779339508538	5.68309964647742	5.49066475655751	5.37505586268694	5.38067256861386	5.45204497256337	5.72510345091427	0.0895492842124355	0.761244834326724	0.906512173824769
Merged-chr5-63859011-3	chr5	63858918	63859118	+	813.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	46523.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	3.77591469601258	3.86363120605623	3.67518982572358	3.97226548729786	3.50465965136001	3.55989263348883	3.71149088009551	3.44364149299616	-0.8751672452876	0.070067844455312	0.28332843374232
Merged-chr19-12460731-3	chr19	12460625	12460825	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010821)	promoter-TSS (NM_010821)	-54.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	5.10831853238489	4.84649073740885	5.00072601017424	5.28101957092032	5.67606844669369	5.02261030548276	5.33338626910422	5.76526592587452	0.733331231051855	0.0273955911345151	0.157816177426445
Merged-chr17-73936780-4	chr17	73936687	73936887	+	938.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 4 of 35)	intron (NM_011723, intron 4 of 35)	13409.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	4.85765755104112	4.97491935622237	4.82307554442636	4.91066648285009	4.30364043327143	4.88446601131942	4.64910326088935	4.70748555344848	-0.541112509834266	0.126434293520119	0.395269705659896
Merged-chr12-113152035-4	chr12	113151899	113152099	+	969.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007763)	promoter-TSS (NM_007763)	-13.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	4.68435724429178	4.59813515051417	4.41341091024236	4.59120461265294	4.41782099286724	4.54295991329558	4.30497741691969	4.12144778283517	-0.506175777334775	0.180143910551762	0.476476660442342
Merged-chr14-17967475-4	chr14	17967369	17967569	+	959.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 4 of 9)	intron (NM_001113417, intron 4 of 9)	-14175.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	5.01561849328142	5.13360642817733	5.51076584353843	5.25866596172638	5.10869679766623	4.83214883160816	5.3573476984081	4.86250203284279	-0.337553965708391	0.30452393833618	0.617066911687048
Merged-chr6-87511153-4	chr6	87511059	87511259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-14832.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	6.67912228070913	6.63676383905868	6.84954137670157	6.85599091044283	6.62136814653381	6.55211104645528	6.64630622674159	6.84470077896468	-0.135638707526683	0.510052712622503	0.774491040868614
Merged-chr10-98958940-4	chr10	98958850	98959050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	43798.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	6.01687350637921	6.48208001256134	5.82180781980446	6.26749342476112	6.29994681228382	6.64560882806693	6.07452441066869	6.18347202635763	0.204455341730067	0.443474033050844	0.729973488022342
Merged-chr7-96630638-2	chr7	96630532	96630732	+	718.25	f0_balb.idr|f1_balb.idr	intron (NM_011858, intron 5 of 32)	RLTR45|LTR|ERVK	170917.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	3.78104991405704	3.60452914941192	3.69938115456459	3.27088645774108	2.90382384226492	2.93380789586878	2.89263486331585	2.89937409046865	-3.05169993612364	1.78925579077259e-05	0.000462613287073745
Merged-chr8-11636462-4	chr8	11636356	11636556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281975)	promoter-TSS (NM_001281975)	-699.0	NM_001281974	102334.0	Mm.12459	NM_133971	ENSMUSG00000031508	Ankrd10	4833425P12Rik|AW549277	ankyrin repeat domain 10	protein-coding	7.15344648879309	6.96591399430369	7.02347121049593	7.22903563625529	7.26358698759492	7.09594876983754	7.27749868195593	6.96721763117803	0.0789299340822778	0.684209867848605	0.870646873868743
Merged-chr10-61838925-2	chr10	61838825	61839025	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304757, intron 37 of 37)	intron (NM_001304757, intron 37 of 37)	-55061.0	NM_207000	404634.0	Mm.272870	NM_207000	ENSMUSG00000020086	H2afy2	macroH2A2	H2A histone family, member Y2	protein-coding	2.8462257282193	2.93049908694155	3.03682908282509	2.7389045748392	3.01716068143501	3.20641662563193	2.96569363058435	3.0928310440333	0.801383556150092	0.172062263542332	0.465284547400641
Merged-chr11-54140250-4	chr11	54140157	54140357	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	39333.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	5.82065733297607	5.07712132170118	6.17349043375349	5.46208845188025	4.60532447520339	5.08649149684317	4.87863422440756	5.35335648520304	-1.2361428117682	0.00123912293920799	0.0159752819579579
Merged-chr1-164586737-4	chr1	164586648	164586848	+	926.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83441.0	NR_151593	102635083.0	Mm.98705	NR_151593	ENSMUSG00000097281	Gm26685	-	predicted gene, 26685	ncRNA	4.20129121928889	3.90081188201136	4.45566081250114	4.66113128053816	4.17353405755783	4.00934620254609	4.18364983587428	4.49039687539952	-0.298040894988863	0.505940425670451	0.771753499749203
Merged-chr7-81572386-4	chr7	81572376	81572576	+	988.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004185, intron 1 of 9)	intron (NM_001004185, intron 1 of 9)	1184.0	NM_001004185	434204.0	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	2.7320537507252	2.7805394286645	2.73232045179729	2.67364565085993	3.12798457412424	3.27817715374225	2.92411597550198	3.16207155382704	1.75549272406608	0.00340625778316297	0.0352763018693085
Merged-chr10-24087141-3	chr10	24087054	24087254	+	802.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5140.0	NM_001010837	382348.0	Mm.377897	NM_001010837	ENSMUSG00000100186	Taar8b	Gm1149|taR-8b	trace amine-associated receptor 8B	protein-coding	3.44775954898965	3.6163469850046	3.66914682929476	3.77974798175304	3.45173561667328	3.78683009345747	3.65399279085427	3.44647519278735	-0.177555264181951	0.720184404362048	0.888180968925399
Merged-chr3-145937999-4	chr3	145937966	145938166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356284)	promoter-TSS (NM_001356284)	52.0	NR_151446	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	7.42836238455638	7.46772012655348	7.78299742494112	7.76820922088672	7.43604564256415	7.54596571145196	7.64383591411533	7.68424850983414	-0.0672262393321888	0.717283622136786	0.886969736012834
Merged-chr5-72230791-4	chr5	72230704	72230904	+	915.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 3 of 22)	intron (NR_003966, intron 3 of 22)	27461.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	4.88494118012747	4.88605638019593	4.7298379588986	5.45620345474086	5.19910839419829	4.58767384873389	4.96716229175443	4.88249453169527	-0.206582801374137	0.586201617667113	0.818557203798918
Merged-chr10-89442815-4	chr10	89442707	89442907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079876, intron 1 of 10)	intron (NM_001079876, intron 1 of 10)	1160.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	5.83598437700469	5.8879202443499	5.60678603336223	5.62736070873865	6.34840182439991	5.81158932658973	5.4621483896592	5.92303297613076	0.32297086649496	0.274301483840689	0.586057491169036
Merged-chr14-37134748-4	chr14	37134645	37134845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_078478, intron 1 of 8)	intron (NM_078478, intron 1 of 8)	394.0	NM_001199122	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	6.06636297059493	6.16683173262633	6.0249720895343	5.99926872604484	6.2711199906184	5.93990380495533	6.01553521036537	6.02067864931303	0.0274752905993036	0.908102150720022	0.965960244231753
Merged-chr19-37547026-4	chr19	37546968	37547168	+	838.287476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3350.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	3.75228971544553	3.80922209105893	4.18646272610488	3.89631646254008	4.02543821638495	3.9836269305265	4.03970648946502	4.00912982447736	0.264604621211598	0.539414055928443	0.792185453341103
Merged-chr2-24341643-4	chr2	24341527	24341727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031167, intron 1 of 4)	intron (NM_031167, intron 1 of 4)	-3664.0	NM_001159562	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	5.24496025343186	5.34808116757746	5.27800355203978	5.30688771898763	5.53643341889295	5.54409017640968	5.28316978211218	5.65512791016481	0.379199445664019	0.172428206251797	0.465849362058629
Merged-chr8-85036047-4	chr8	85035934	85036134	+	955.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145390)	promoter-TSS (NM_145390)	-881.0	NM_145390	212999.0	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	4.1233831876505	4.08598853051978	4.1239871113597	4.18129615246946	4.38186646929521	4.29687654488053	4.10651768747337	4.38249290195627	0.413976150203873	0.290319375211192	0.602462038492102
Merged-chr6-87513600-4	chr6	87513493	87513693	+	848.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-17266.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	3.95130826128129	3.96889058694267	3.60334975006776	3.77007298365872	4.15153537254636	4.0229480003288	4.286567131727	4.41506642794328	1.0517755101547	0.0145970509642216	0.102799683484031
Merged-chr2-145685103-3	chr2	145685015	145685215	+	694.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-16080.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	3.28820836185189	3.31930316019989	3.3454186255896	3.87830392908467	3.08132707130016	2.9929517400535	3.33239756174564	3.22765075002872	-1.22601572562647	0.0416371669090895	0.206656435370918
Merged-chr2-18987711-3	chr2	18987630	18987830	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	RMER4B|LTR|ERVK	10391.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	3.32053461349214	3.25633949550746	2.9904489257337	3.62114217704819	3.03042843051119	3.49331359722623	3.56896178999533	3.53418733679898	0.331459551350455	0.586204640102727	0.818557203798918
Merged-chr11-95859254-3	chr11	95859174	95859374	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045187, intron 1 of 1)	CpG	457.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	5.71991681553494	5.79515630681491	5.47435277479054	5.04687795608349	5.91668400595825	6.0795274919574	5.7162612061165	5.90170451871099	0.639216063555372	0.0329696725223808	0.178204222356854
Merged-chr9-116058630-4	chr9	116058524	116058724	+	870.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028638, intron 14 of 14)	intron (NM_028638, intron 14 of 14)	116739.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	4.2589629552547	4.41701001058256	4.69158967346851	4.65268270905876	3.95221862125653	4.18354797423319	4.24101781669336	4.43137722501065	-0.765353603843604	0.0605713931488707	0.260052547978977
Merged-chr8-61877790-3	chr8	61877682	61877882	+	653.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081390, exon 2 of 20)	exon (NM_001081390, exon 2 of 20)	24908.0	NM_001081390	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	2.95636962470838	3.14118802606895	2.95673269820045	3.122903933479	2.67307152819331	2.71415892764623	3.11491123367992	2.95526431225385	-0.774203273243544	0.227080373326148	0.535725428645169
Merged-chr7-30321749-4	chr7	30321675	30321875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033140, exon 1 of 1)	3' UTR (NM_001033140, exon 1 of 1)	600.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	5.71170214059439	5.88396481661187	5.80058874525216	5.27854181429322	5.12243041436851	5.05715874410698	5.22417156459444	5.21328025158779	-0.923987738710747	0.0030093003294532	0.032060917250434
Merged-chr9-72467720-3	chr9	72467609	72467809	+	919.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009359, intron 10 of 11)	intron (NM_009359, intron 10 of 11)	24250.0	NM_009359	21778.0	Mm.14485	NM_009359	ENSMUSG00000090626	Tex9	Gm19407|tsec-1	testis expressed gene 9	protein-coding	3.70303129971809	3.51085013573646	3.58304381350927	3.03485193872512	4.18057496224245	3.93984321723211	4.34543355565085	4.21882979377451	2.13303129623196	2.4720818462889e-05	0.000613102138456438
Merged-chr17-28709929-4	chr17	28709805	28710005	+	923.160706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	17337.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	3.90562306451274	3.95292590747118	3.80506365639677	4.14409333630031	3.9954619613806	4.02734867403829	3.43439153943807	3.74933794535627	-0.392481795465273	0.419028442704536	0.712251159515261
Merged-chr11-4637681-4	chr11	4637571	4637771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029291)	promoter-TSS (NM_029291)	-122.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	6.31127029958998	6.15713670967111	5.89203454185423	6.09478653162047	6.36499226053186	6.18784435140582	6.34921453258203	6.27163415515937	0.272169731939669	0.236533806687214	0.546577661329488
Merged-chr13-34651114-4	chr13	34650989	34651189	+	890.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025831, intron 1 of 4)	intron (NM_025831, intron 1 of 4)	1592.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	4.26262312967204	4.49639527500529	4.70715110796718	4.88513895400027	4.27005642302723	4.23632067355682	4.24500822050944	4.39765191669056	-0.780780783293199	0.0497104524321612	0.230826557092361
Merged-chr12-12230289-4	chr12	12230180	12230380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D-int|LTR|ERVL-MaLR	-31859.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	7.5562487905742	7.98265466910627	7.84756247116064	7.41770953058409	8.04232611461096	8.01010642140318	7.787257305434	7.7422535274385	0.248081006027301	0.213380174369295	0.518757682609196
Merged-chr10-77619841-4	chr10	77619724	77619924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14_RN|LTR|ERV1	-2497.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	5.67796508941673	5.78544333725506	6.21701188150918	6.14296143866774	5.6258498358346	5.43579295022358	5.51488752294977	5.41846888644175	-0.787589353381795	0.00476580676829771	0.0458598566933436
Merged-chr12-99560817-4	chr12	99560723	99560923	+	848.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3018.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	3.90767634248793	3.92694957140768	3.85677852672444	3.8621827512578	4.248067473899	4.02950100987406	3.89213056361446	3.90598151738601	0.409916702018446	0.339495358988344	0.648774648981312
Merged-chr12-40504204-4	chr12	40504099	40504299	+	975.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	L1M2|LINE|L1	58146.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.65736420872589	4.07824116479163	4.1460980037175	4.4583424361536	4.80004267514528	4.04386339432802	4.60029416819515	4.50620199181986	0.377964643614802	0.380154914557107	0.682564774596403
Merged-chr19-6164349-4	chr19	6164232	6164432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028967)	promoter-TSS (NM_028967)	-107.0	NM_001356604	74481.0	Mm.159219	NM_028967	ENSMUSG00000039699	Batf2	B-ATF-2	basic leucine zipper transcription factor, ATF-like 2	protein-coding	5.82120632748692	6.60815653882906	5.71709234044629	5.63496571833821	6.25149130169571	6.52506533494408	5.88907110643136	5.74010904393865	0.199580506660295	0.549880698610411	0.798182929229814
Merged-chr17-17626106-2	chr17	17626006	17626206	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1617.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	2.9479890961002	2.85138111322567	3.12078513884113	2.80291514830496	3.02146507532872	3.11853186883051	2.93779874182357	2.74856144196824	0.152176771639841	0.803050145934667	0.923982127240574
Merged-chr4-99163729-4	chr4	99163627	99163827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30207.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	7.30570626162972	7.63674982211805	7.20948134384651	7.08549588265184	7.3266200866515	7.43062950769505	7.44484456209043	7.1234090700882	0.0212999098757878	0.91790355971866	0.969760089182615
Merged-chr7-101858597-4	chr7	101858489	101858689	+	951.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008034, exon 7 of 7)	exon (NM_008034, exon 7 of 7)	-1399.0	NM_001303239	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	5.52862924320918	5.24630724429491	4.97464821611838	4.99571268266415	5.13501684715449	5.03811468343443	5.29822938548383	4.77410417740363	-0.222312077000913	0.507359828561833	0.772710503440438
Merged-chr7-27258699-4	chr7	27258568	27258768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010950)	promoter-TSS (NM_010950)	-93.0	NM_010950	18223.0	Mm.458153	NM_010950	ENSMUSG00000063160	Numbl	nbl	numb-like	protein-coding	7.20750594621667	7.36338754956514	7.04278724330389	7.11431133401298	7.38065602736141	7.51204689818524	7.26846712573322	6.99925671089405	0.160250741545412	0.423048584276056	0.714964864073543
Merged-chr7-126230556-3	chr7	126230458	126230658	+	838.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131046, intron 2 of 4)	RMER1C|Other|Other	7046.0	NR_131047	76728.0	Mm.76920	NR_131046	ENSMUSG00000108676	1700123J17Rik	Gm44875	RIKEN cDNA 1700123J17 gene	ncRNA	3.25378229721826	3.24010123279232	3.13206295440859	3.26180559423113	3.0488068383857	3.24313357317848	3.45341674549025	3.46636934023785	0.306229128118762	0.576580472227311	0.813599933244807
Merged-chr14-43918368-4	chr14	43918252	43918452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5016.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	5.99927075827404	5.67634170712034	5.95832825247384	5.63749522897045	5.80729743270991	5.97435429947662	6.02972215854941	5.6130847692403	0.0820553124380962	0.757267109695632	0.904645882231935
Merged-chr9-66069806-4	chr9	66069707	66069907	+	974.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025612)	promoter-TSS (NM_001025612)	-76.0	NM_001025612	382083.0	Mm.477103	NM_001025612	ENSMUSG00000039452	Snx22	Gm1120	sorting nexin 22	protein-coding	6.19057198444804	5.94523183002645	5.2597323000065	5.33004032730572	5.75954240631176	6.25372500046769	6.02895585491683	5.88663419607853	0.413244609740191	0.201718397069205	0.504156139969769
Merged-chr12-119398417-4	chr12	119398314	119398514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44996.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	7.08123989911147	7.50568230287937	7.56497790985329	7.10860608275654	7.39633285231776	7.59753174032964	7.27438013592895	7.15042672110495	0.0495215997499554	0.81541785212061	0.928768919159139
Merged-chr8-83741281-4	chr8	83741173	83741373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163031)	promoter-TSS (NM_001163031)	38.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	8.81284618627966	8.82885351317708	8.63593189765965	8.36208553845436	8.34640150212696	8.55726689740617	8.76273743006003	8.36859178339652	-0.189240979723785	0.304154223936689	0.616809410683768
Merged-chr1-170997899-4	chr1	170997792	170997992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21034.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	5.77466109780342	5.27953501814651	5.82335201217195	5.89413887685931	6.01810349768903	6.04333448154803	5.53685095884263	5.86509930763684	0.2638524886789	0.360245101246146	0.665751588636582
Merged-chr18-67343423-4	chr18	67343397	67343597	+	807.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007702)	promoter-TSS (NM_007702)	-67.0	NM_007702	12683.0	Mm.449	NM_007702	ENSMUSG00000024526	Cidea	AW212747	cell death-inducing DNA fragmentation factor, alpha subunit-like effector A	protein-coding	4.10266659983431	4.32991160692391	3.80850756514392	3.85629423652842	3.76341298451122	3.7510713765125	4.04064283107757	4.05612411925916	-0.353891126097102	0.442298912621595	0.729012256605129
Merged-chr11-73176583-4	chr11	73176527	73176727	+	979.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029564)	promoter-TSS (NM_029564)	381.0	NM_001168470	66048.0	Mm.73608	NM_025318	ENSMUSG00000047260	Emc6	0610009E20Rik|0610025L18Rik|Tmem93	ER membrane protein complex subunit 6	protein-coding	4.37621730522339	4.41923110847093	4.54596909190059	4.01296993637693	4.58506401157362	4.63749293770888	4.7067825319089	4.50281909900263	0.633152396731819	0.0980987160289682	0.343275576826406
Merged-chr1-93478419-4	chr1	93478322	93478522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159718)	promoter-TSS (NM_001159718)	-45.0	NM_001357556	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	8.54309274475628	8.57019237098474	8.63843560250569	8.63935756560349	8.81216602477753	8.86083127710897	8.77558189055922	8.79798001968469	0.264747295916314	0.0574513842262398	0.251511905888402
Merged-chr14-54781196-4	chr14	54781113	54781313	+	914.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016972, exon 1 of 11)	exon (NM_016972, exon 1 of 11)	673.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	4.47300642944085	4.39877112815199	4.78320671837597	4.16696503885556	4.35675474394521	4.81040962106496	4.88888404151291	4.63473288494299	0.491135031996874	0.21221401347271	0.517089355139349
Merged-chr11-116853680-2	chr11	116853588	116853788	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_011358)	promoter-TSS (NM_011358)	-74.0	NM_001361585	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	6.67425286364216	6.76539720271965	6.69099753484255	6.53690115792163	6.91972306807725	7.04063161428415	6.86896989516298	7.25935091607474	0.514443529610546	0.0119068134920107	0.0893908952165206
Merged-chr3-105717014-4	chr3	105716922	105717122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175398, exon 2 of 2)	exon (NM_175398, exon 2 of 2)	11564.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	7.05154835636912	7.40827454606173	7.45085872089722	7.5558172515562	7.08591574927776	7.15222918306946	7.10258266958774	7.36974481681343	-0.283434547956919	0.156772268463065	0.442893690014765
Merged-chr1-46832175-4	chr1	46832081	46832281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356416, intron 4 of 10)	intron (NM_001356416, intron 4 of 10)	21437.0	NM_001356416	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	5.77956229630108	5.43454960640935	5.90284260378205	5.97360225117244	6.10709917729806	6.14640461275351	6.30045264866113	6.18866603151762	0.604290050571795	0.0185962182948888	0.121995570092924
Merged-chr10-86110334-2	chr10	86110234	86110434	+	655.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_038024, intron 2 of 2)	intron (NR_038024, intron 2 of 2)	14480.0	NR_038024	78170.0	Mm.444790	NR_038024	ENSMUSG00000112493	4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	2.49756828988458	2.43174061021303	2.34041604991054	2.35073505248429	2.79605728952222	2.9966739703121	2.75618025252024	2.93660959665878	2.45537068397699	0.000357090871148712	0.00584979772554526
Merged-chr5-43848485-4	chr5	43848410	43848610	+	978.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20299.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	5.10247220436841	4.54112687509666	5.07160681619747	5.41477078813417	4.9044671330776	4.74796520649669	4.83940863891866	5.19037373322379	-0.296461028712709	0.422977630870169	0.714938134013999
Merged-chr2-70091349-4	chr2	70091252	70091452	+	971.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177376, intron 2 of 34)	MLT1B|LTR|ERVL-MaLR	52226.0	NM_177376	329421.0	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	4.5450808329145	5.30999243648996	5.36942275863869	5.53318346538765	4.7366490652278	4.47324531165493	4.74365357827974	4.84155223571828	-1.07176278959652	0.00508406289945459	0.0480906644421627
Merged-chr7-79884133-4	chr7	79884041	79884241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009682, intron 4 of 5)	L1MB2|LINE|L1	-35931.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	6.37161723624034	6.76406614548898	6.7445639797142	6.40115272179508	6.89945356699479	6.60505768268961	6.72404541697872	6.22936344705252	0.0990044769393116	0.685980379430972	0.871760528240684
Merged-chr1-88643022-4	chr1	88642923	88643123	+	963.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59168.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	4.50372992130702	4.65570443875219	4.81019348028795	4.58719135373153	4.73028136460631	4.83779366659541	4.48413885220639	4.31660729468992	-0.0619462298960128	0.865834619955224	0.949727926552738
Merged-chr11-53825596-4	chr11	53825505	53825705	+	890.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 2 of 3)	intron (NR_033332, intron 2 of 3)	33651.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	3.64805491864325	4.01402485688011	4.13075324661356	4.37617698395255	4.63394942402395	4.53511579505297	4.57288594273679	4.51948348611516	1.1251475772472	0.0118121468416051	0.0888630455152787
Merged-chr6-120463956-6	chr6	120463815	120464015	+	974.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	718.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	3.71299076377889	3.88161082236333	4.2134075159359	3.67742817541917	3.73594072502556	3.51904460009875	3.75265082984468	4.09291017643577	-0.258008922058067	0.601585131441074	0.827133488921953
Merged-chr2-122126384-4	chr2	122126283	122126483	+	785.295837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026251, intron 7 of 17)	intron (NM_026251, intron 7 of 17)	-7997.0	NM_145531	214585.0	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	SPG11, spatacsin vesicle trafficking associated	protein-coding	4.28098475759196	4.06318819131858	4.19756859006835	4.31509729335283	3.98939296531369	3.8513501340668	3.94327019194417	4.2376286789913	-0.545744351519098	0.194576514591223	0.494987910367714
Merged-chr16-12090378-4	chr16	12090338	12090538	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028277, intron 2 of 4)	intron (NM_028277, intron 2 of 4)	106325.0	NM_001174086	72555.0	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	4.97063792025641	4.5007578737301	5.19509131022053	5.53487587377539	4.83079040195477	4.54773563670118	5.01474576458276	5.22034686556097	-0.369006459644497	0.35834047533132	0.664365406689102
Merged-chr7-31156484-4	chr7	31156396	31156596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-5325.0	NR_153431	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	7.22560973586136	7.33140590127315	6.93714941300418	6.57918769016049	7.04874892295793	7.06093119978877	6.96529329776766	6.50145976753873	-0.174997734204182	0.48682606199114	0.7603696580653
Merged-chr10-77540858-4	chr10	77540764	77540964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	10516.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	5.56664125783497	5.33224916115227	5.91952866987552	6.20692012452831	5.29161237338297	5.37409026648026	5.66715109486942	5.35882140881106	-0.656967587741851	0.0411828993906811	0.205330540935371
Merged-chr6-143167177-4	chr6	143167086	143167286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029250)	promoter-TSS (NM_029250)	-44.0	NM_029250	75320.0	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	8.18050850321158	8.30503077522289	8.23604723147207	8.51131141711941	8.31385021931802	8.30284600373056	8.53064459516615	8.13897080646201	0.0091443404237233	0.957343744616931	0.984815156534365
Merged-chr4-55335204-3	chr4	55335115	55335315	+	769.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14827.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	3.2669673870993	3.15702044302011	3.37736744543903	3.60190633526048	3.26297552462785	3.05034580479181	3.25536085415621	3.26570175865707	-0.585256874924572	0.299587570853172	0.611833407526447
Merged-chr13-36695977-4	chr13	36695871	36696071	+	906.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38506.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	3.77998845182574	3.77260423576494	4.03686564326864	4.14572453206265	5.09951801306189	4.7420927708441	4.79314535021993	5.1035878776911	2.22257356500065	2.7871812315812e-07	1.0900482026523e-05
Merged-chr1-4768528-4	chr1	4768439	4768639	+	734.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17187.0	NM_001177658	27395.0	Mm.182927	NM_025300	ENSMUSG00000033845	Mrpl15	HSPC145|MRP-L7|Rpml7	mitochondrial ribosomal protein L15	protein-coding	4.02580841399663	3.90592444712146	4.07291278855432	3.59427658884236	4.01547179388646	4.1508271421327	3.9116465318357	4.20024953209114	0.481435497396875	0.280368184118064	0.592346638474506
Merged-chr15-73135144-4	chr15	73135041	73135241	+	959.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 3 of 18)	ORR1B1|LTR|ERVL-MaLR	44729.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	4.7052292394669	4.19230381228712	4.84662260126508	4.35892603627108	4.76704215386772	4.44895065043789	4.88704165294372	4.73946730584232	0.401004087181297	0.298354218832832	0.61047388226355
Merged-chr3-121721872-4	chr3	121721774	121721974	+	939.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1663.0	NM_010171	14066.0	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	4.46269206073944	4.61047950602977	4.50917526173818	4.42579612069339	4.75826557054472	5.24950129260638	4.73183361150307	4.89213328114686	0.879086771759192	0.0122828503448638	0.0913946272942777
Merged-chr10-57001535-4	chr10	57001435	57001635	+	910.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	484818.0	NR_045353	74928.0	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA	4.95705383612103	5.12995798657964	5.02387788713328	5.29300630873002	4.58391500502119	4.65125111801931	4.79184426631063	4.65034623821538	-0.926907931900938	0.00530080269878838	0.0496786096957443
Merged-chr15-25284539-4	chr15	25284434	25284634	+	894.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	129230.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	4.67279949790871	4.39376712528478	4.58665902236808	5.46870056162837	5.05527564055817	4.67591460558	5.38868155954662	4.53813591293648	0.174942187725479	0.699830172491247	0.878927425633075
Merged-chr14-8173832-4	chr14	8173717	8173917	+	918.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024221)	promoter-TSS (NM_024221)	-825.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	4.48243314732703	4.38258730239566	4.03805747790848	3.94435590376713	4.43952340004107	4.61458770720152	3.730112051874	4.27701984634322	0.193089403760465	0.680723564521619	0.868956507598538
Merged-chr3-31100215-4	chr3	31100101	31100301	+	969.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	5143.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	4.92416402729917	5.90410011720444	4.96448789994292	4.83322773916452	5.44351565129456	5.28908023896541	5.36454355031837	5.35977393725126	0.22847641088515	0.542668959865203	0.793917205662524
Merged-chr9-62367862-3	chr9	62367795	62367995	+	850.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	intron (NM_009672, intron 1 of 6)	26552.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	3.37229793075549	3.43197943380471	3.57619068550214	3.51950264617109	3.27743148681615	3.02321771414792	3.30408962809574	3.25576377401814	-0.933202190248102	0.0868338656976006	0.321378313565387
Merged-chr1-151245407-3	chr1	151245314	151245514	+	690.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99072.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	3.70044110934484	3.81545741859937	3.64722511056298	3.99459159825009	3.619194032658	3.45342404391093	3.63315975580958	3.93757958094407	-0.408421411736012	0.404394565324927	0.701481185306128
Merged-chr4-122853278-4	chr4	122853193	122853393	+	872.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008917, intron 5 of 8)	intron (NM_008917, intron 5 of 8)	17066.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	4.38950893368217	3.92163450827377	3.85972840430308	4.46745100927703	4.19690394737964	4.39293192372155	4.2890035413769	4.21879978742576	0.172968969834479	0.692997316588453	0.875210361913583
Merged-chr14-75845207-4	chr14	75845128	75845328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045294)	promoter-TSS (NR_045294)	-28.0	NM_009429	22070.0	Mm.297482	NM_009429	ENSMUSG00000060126	Tpt1	TCTP|Trt|p21|p23	tumor protein, translationally-controlled 1	protein-coding	9.00161892831462	9.33746937368398	9.23061864428469	9.31217495198344	9.26995349713821	9.49459789510978	9.56710429031998	9.20028652995935	0.198074116475077	0.218733496063531	0.526031051740966
Merged-chr2-166651936-3	chr2	166651828	166652028	+	737.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	61904.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	3.44246142396337	3.40500077982785	3.14306331223603	3.32747839344344	3.19024274866194	3.61184635820395	3.25964643206165	3.54369466013055	0.255317698224878	0.635240021316732	0.845633612363053
Merged-chr7-80779502-4	chr7	80779405	80779605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	23826.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	8.36854166528266	8.67733593586594	8.35913885578648	8.25989220456345	8.36660403423612	8.43561093682309	8.48628971204909	8.14969058091188	-0.0741603167960552	0.6686910304229	0.863196405156422
Merged-chr5-21785216-4	chr5	21785136	21785336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009584)	promoter-TSS (NM_009584)	-47.0	NM_011188	19181.0	Mm.2462	NM_011188	ENSMUSG00000028932	Psmc2	-	proteasome (prosome, macropain) 26S subunit, ATPase 2	protein-coding	7.5573159047913	7.50127165938779	7.04056768279443	7.55888260620061	7.85574893021036	7.67129880198646	8.0434340969106	7.71414673606537	0.515557434071158	0.00939812662438054	0.0755277469794267
Merged-chr4-126102554-4	chr4	126102477	126102677	+	996.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1380.0	NM_028800	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	6.57331939146067	7.30516953900941	6.13366043755214	6.08100069295365	6.22136007436317	6.35333590817052	5.68446418309335	5.61913993416928	-0.915841339843987	0.00936007375352867	0.0753108240159844
Merged-chr9-60602174-4	chr9	60602093	60602293	+	955.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311095, intron 12 of 15)	intron (NM_001311095, intron 12 of 15)	-56311.0	NR_040463	100504561.0	Mm.410770	NR_040463	ENSMUSG00000111761	9230112J17Rik	-	RIKEN cDNA 9230112J17 gene	ncRNA	4.98582224740401	4.93149122965076	4.98666262676041	5.12493502889029	4.58072067078993	4.82629234644589	4.62815725116117	4.94993629844573	-0.551984758411562	0.0965940578064771	0.340521442256809
Merged-chr1-186703703-4	chr1	186703610	186703810	+	973.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329107, intron 1 of 7)	intron (NM_001329107, intron 1 of 7)	2279.0	NM_009367	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	5.38651551493068	5.44076528089396	4.94567695917293	5.59846037374095	5.18744012648509	4.73956487437428	4.95897612416971	4.86483198557237	-0.782631029910009	0.0207285497814208	0.131173314801899
Merged-chr5-142907394-4	chr5	142907305	142907505	+	874.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007393)	promoter-TSS (NM_007393)	-651.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	4.0411780145221	3.86311180673972	3.52898800986263	3.14690358998388	3.41621364962256	4.08013441968182	3.74247345977635	4.03913414717682	0.446947211574698	0.429531012395628	0.720412543446085
Merged-chr12-52603881-4	chr12	52603778	52603978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	U6|snRNA|snRNA	-1556.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	6.02398752116541	6.13036162293206	6.45460560904707	5.47420914537473	6.4459989922985	6.77053616062783	6.43770443678961	6.75649011981821	0.836789416276426	0.00310514738330679	0.0328314446815796
Merged-chr10-37320243-4	chr10	37320129	37320329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-181303.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	6.70955109122422	7.08795025327581	6.81149136305598	6.01123801602327	6.94776888992086	7.05512602897164	6.96796836157705	6.49448415624462	0.255086245072467	0.365326899867773	0.670036077799093
Merged-chr14-34769174-4	chr14	34769082	34769282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50954.0	NM_008166	14803.0	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	5.30788286225222	5.47696516600357	5.58558640694679	5.4301844143136	5.32502384288257	5.32117532494965	5.34257221514634	5.39462329970121	-0.189858836660831	0.492186628664126	0.76335556384627
Merged-chr5-114922507-1	chr5	114922407	114922607	+	1000.0	f1_balb.idr	promoter-TSS (NM_145209)	promoter-TSS (NM_145209)	-733.0	NM_001359946	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	3.92642421270386	3.87553351902977	3.88246540060468	3.70107069605484	3.66247965667932	3.57092876499041	3.44378706383996	3.5741791777606	-0.845965912974543	0.078591045071176	0.303314644966721
Merged-chr2-169089282-1	chr2	169089182	169089382	+	797.0	f0_balb.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	111013.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	3.16876895401162	3.34760417460898	3.16915534264506	3.59499540896497	2.9099635871243	3.15099162629072	3.09663723488512	3.38992117859619	-0.754696987577742	0.206517260695041	0.510530062828198
Merged-chr7-45536227-4	chr7	45536127	45536327	+	950.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148927, intron 6 of 19)	RMER16_Mm|LTR|ERVK	9897.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	5.09433099634326	5.47462145033753	4.87916326362915	4.42321083900298	5.23666704300088	5.01869756000715	5.41318565421906	5.15624140563282	0.375431671919909	0.319818838875448	0.631656381031906
Merged-chr18-39446135-4	chr18	39446032	39446232	+	944.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	41113.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.61291741240746	4.99685957682861	4.57376802930348	4.6412402159807	4.4640619929743	4.62135193488088	4.28628480436879	4.52969907435425	-0.528275067959637	0.152543572866081	0.436763594091937
Merged-chr4-127250138-4	chr4	127250023	127250223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6339.0	NM_030252	80284.0	Mm.139607	NM_030252	ENSMUSG00000042380	Smim12	BC003266	small integral membrane protein 12	protein-coding	5.37662142830983	5.62213659397468	5.34616600518995	5.22846020099874	6.06115488905051	5.67139305211147	5.76663981510334	5.34246681542771	0.602157470750434	0.0436011359539565	0.212509261576737
Merged-chr15-27708663-4	chr15	27708557	27708757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27115.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	6.41783451990984	5.94779800235088	6.10615356497497	5.95180654370633	6.03547057264023	6.08067940813578	6.23097414265191	6.56723768480283	0.203486982441367	0.433273315080373	0.722830392839943
Merged-chr16-22438890-3	chr16	22438815	22439015	+	958.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358428)	promoter-TSS (NM_001358428)	-547.0	NM_001358428	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	3.67358289795851	3.48905801988927	4.21582070759605	3.77193773072137	3.48045670965922	3.90365775766467	3.54374674633234	4.05717688509247	-0.136687178363697	0.794928431295141	0.920679675401611
Merged-chr13-92651142-4	chr13	92651033	92651233	+	977.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172588, intron 1 of 11)	MIRb|SINE|MIR	39995.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	5.01401541875282	5.58131358836071	5.77949398821267	5.66722597579161	4.87330471434081	5.195572857337	5.68475816730802	5.12261451503851	-0.52618079926877	0.132080928650609	0.404590699763458
Merged-chr4-46458632-3	chr4	46458524	46458724	+	780.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130889, intron 1 of 6)	intron (NM_130889, intron 1 of 6)	7698.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	3.20453748000557	3.59412834821666	3.43563857234196	3.39446623250747	3.15394509784224	3.49483156213423	3.31292618550634	3.26472174785594	-0.395540956302794	0.462531313293428	0.744062113791058
Merged-chr18-4920525-4	chr18	4920421	4920621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	108035.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	5.93501477010232	5.46776716618155	5.46722698013142	5.75436414901822	5.51964032814598	5.55143915754536	5.79942524094103	5.9719000607184	0.0749202597730374	0.792428476136622	0.919610988558604
Merged-chr6-131293265-4	chr6	131293124	131293324	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025564)	promoter-TSS (NM_025564)	20.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	5.21894141073199	5.70851829085566	5.25282632775877	5.49252835329861	5.6683473207776	5.55141012788063	5.05444433936989	5.37321124032137	-0.00198741831332943	0.994923254686573	0.998190746524986
Merged-chr10-53925611-4	chr10	53925513	53925713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 8 of 12)	intron (NM_008548, intron 8 of 12)	150183.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	7.11030794195554	7.00723009973393	7.22974597172176	7.23801409405295	6.79662787336904	6.5834842536267	6.74315424936472	6.74304871695164	-0.599044600133933	0.00215015102485641	0.0247326437941588
Merged-chr1-43903019-3	chr1	43902915	43903115	+	903.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30979.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	3.37126034837829	3.51045339860478	3.3717106765054	3.32571532470182	3.3073059160265	3.48463494075243	3.18464131412549	3.19360754790673	-0.351211301455864	0.50654283220079	0.772324827633023
Merged-chr5-121733995-4	chr5	121733913	121734113	+	892.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	intron (NM_009125, intron 1 of 24)	-4519.0	NM_001359153	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	3.80926920566795	3.92009375511531	3.51721864699294	4.27316948145022	3.88032140428202	3.81861517560935	3.94124298487587	3.90839175024635	-0.113633977691415	0.816958886094077	0.929622615879435
Merged-chr10-80576531-4	chr10	80576436	80576636	+	988.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_078477, intron 1 of 1)	C-rich|Low_complexity|Low_complexity	760.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	4.884242865105	4.79709846679218	4.95696775479298	4.56316494436828	5.116589233722	5.4080553105458	4.74672817187658	5.11720073582826	0.637303077058149	0.061651706405219	0.262709938351119
Merged-chr14-31166260-4	chr14	31166192	31166392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 1 of 68)	intron (NM_138672, intron 1 of 68)	2349.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	8.05503967723955	7.80864720131092	8.32417839814812	7.95637910141899	7.39267366781692	7.63978478895562	7.54833812673366	7.3844942173039	-0.723651997522332	0.000121977474647078	0.00239245926368267
Merged-chr8-120117073-3	chr8	120116953	120117153	+	922.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	L2a|LINE|L2	2901.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	3.98235230318822	3.7790037060161	3.83856362916972	4.48875185751432	3.72463443129499	3.67308416484268	3.47942882595722	3.83633542378366	-1.10919673441783	0.0296291524870615	0.165854016441538
Merged-chr16-31022458-4	chr16	31022355	31022555	+	926.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 2 of 3)	intron (NM_198626, intron 2 of 3)	58977.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	3.8462750301598	4.09690145572865	3.94745708575114	4.12055406103118	4.03287888353133	3.60438829305484	4.06667227087944	3.79133080262695	-0.330642142458838	0.469013471781592	0.748076114999735
Merged-chr4-45320471-4	chr4	45320356	45320556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025513, exon 1 of 4)	exon (NM_025513, exon 1 of 4)	147.0	NM_025513	66362.0	Mm.275788	NM_025513	ENSMUSG00000028322	Exosc3	2310005D06Rik|AI593501|Rrp40	exosome component 3	protein-coding	7.28298264570118	7.36526377668387	7.64071716230832	7.20048535082325	6.52879072283282	7.27259005259636	6.93394081723093	7.05380593088273	-0.565508847727653	0.0137375629751191	0.0986805928959536
Merged-chr11-107451260-4	chr11	107451133	107451333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	19487.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	6.27316393501271	5.78615068333895	6.68057098108202	6.65124770899728	5.94962615974451	5.88164204903255	6.12665773448528	6.23230485193545	-0.530803418475576	0.0626081135233953	0.265071550825705
Merged-chr19-18595053-3	chr19	18594958	18595158	+	840.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 3 of 9)	L1MC5|LINE|L1	36755.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	3.59019205082483	3.99059243678058	3.83714055637385	4.06857868216232	3.20729310493203	3.39852778199765	3.57697099602544	3.47576058611561	-1.65352846493438	0.00197103331719074	0.0231606043143653
Merged-chr18-46597670-4	chr18	46597594	46597794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010120)	promoter-TSS (NM_010120)	-10.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	8.26783431838687	8.56215841484062	7.95681512543011	8.28059972874947	8.39453021486698	8.58322420718004	8.34547104230838	8.27520695110454	0.14754526459098	0.418497210269872	0.711949966908158
Merged-chr3-79532872-4	chr3	79532779	79532979	+	893.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	34800.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	4.15115781514778	3.823759016428	4.15177409348972	3.81910658345197	5.18278613456401	4.95156135467071	4.97739152393602	5.24190448570021	2.50779030858762	7.59837390354657e-12	6.96067768443425e-10
Merged-chr11-121745691-4	chr11	121745554	121745754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43227.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	5.56550504727836	5.72813134002843	5.53930583542387	5.44766176096009	5.63435525372011	5.62961766780492	5.64098195287358	5.50772102792113	0.0674635758531893	0.798772224519354	0.922250290662673
Merged-chr1-7824211-3	chr1	7824114	7824314	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	735294.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	5.07622357743266	5.17632352415583	5.42231436708594	5.83225828637329	3.92396117680439	4.07884208976145	4.29152765687905	4.00873752743666	-3.08122224125153	1.19948633572642e-12	1.26100707502339e-10
Merged-chr4-116076530-5	chr4	116076495	116076695	+	946.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153521, intron 1 of 9)	CpG	1326.0	NM_153521	230654.0	Mm.3655	NM_153521	ENSMUSG00000028703	Lrrc41	AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1	leucine rich repeat containing 41	protein-coding	4.32198085245112	4.37780372649632	4.69409336195792	3.87851741628204	4.11752012889433	4.75569799373798	4.47968397168794	5.08646036827082	0.695297589105555	0.127464848363418	0.397298592914087
Merged-chr9-66915599-4	chr9	66915494	66915694	+	992.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	4111.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	5.00023392710716	5.63700452172765	5.03806515168107	5.12496289949231	5.46340875897373	5.10320598651164	5.51531626050811	5.13963514237733	0.175145893334039	0.594942060350235	0.823658836610386
Merged-chr17-36145755-3	chr17	36145681	36145881	+	945.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033517, intron 1 of 3)	CpG	763.0	NR_033517	675325.0	Mm.75890	NR_033517	ENSMUSG00000038311	2410017I17Rik	-	RIKEN cDNA 2410017I17 gene	ncRNA	3.68697583528671	3.35238448789068	3.9854945813165	3.59785782949311	3.40384780734852	3.65276364706479	3.15257974813165	3.08759254949932	-1.10239079474794	0.0593053653421325	0.256660582458056
Merged-chr4-150397475-4	chr4	150397382	150397582	+	952.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	115566.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	4.68047906615818	4.97213843323803	4.59686142844182	4.69650249620985	5.01144882271579	4.63703748047857	5.04487292796632	5.20700347737875	0.507776138125232	0.138852225228242	0.414381792154761
Merged-chr8-46828583-4	chr8	46828485	46828685	+	959.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	88840.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	4.76813895919298	4.94786061264292	4.53171980167391	4.19010279158709	4.80758891838279	4.82931958341871	4.63395669371871	4.61275323787235	0.211305136042504	0.586180272967491	0.818557203798918
Merged-chr4-4791377-3	chr4	4791265	4791465	+	769.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177730, intron 1 of 4)	intron (NM_177730, intron 1 of 4)	1941.0	NM_177730	242291.0	Mm.218889	NM_177730	ENSMUSG00000066324	Impad1	1110001C20Rik|AA408880|AI451589|AL022796|B230207P20|Jaws|gPAPP	inositol monophosphatase domain containing 1	protein-coding	4.0742082122934	3.59376395745211	4.11796725960382	3.87786922365944	3.97679947579213	3.9005613109405	3.70964706603554	4.11532709340987	0.0272313951849498	0.952969561435211	0.983277820010102
Merged-chr10-57637830-3	chr10	57637737	57637937	+	823.8222049999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039051, intron 1 of 4)	intron (NM_001039051, intron 1 of 4)	5856.0	NM_001039051	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	4.04315532882475	3.79582359643845	4.2186818289274	4.5156126103801	4.07779831258004	3.78469403359011	3.71308633614606	3.94408333890197	-0.772940094506999	0.106811972511902	0.360389144455095
Merged-chr8-105983638-4	chr8	105983542	105983742	+	919.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4223.0	NM_027960	71854.0	Mm.173395	NM_027960	ENSMUSG00000031898	Dpep3	1700018F16Rik|AI507039|MBD-3|MLZ-136	dipeptidase 3	protein-coding	4.59035707789829	4.50195984643781	4.40527541097193	3.69373323897809	4.10996992158745	4.10839317831024	4.16896606511239	4.31972933925645	-0.382448128564518	0.41193608726846	0.70726552639751
Merged-chr8-70864111-4	chr8	70864036	70864236	+	792.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7128.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	3.78967286433963	3.94160550107825	3.67832385885739	3.59167998680359	3.83787185201664	4.06572347359355	3.60537703650208	4.3437532604973	0.665912569758421	0.165884388414311	0.456845174245986
Merged-chr8-26169328-4	chr8	26169225	26169425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11156.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	5.77763615461605	5.98226031158882	5.59999360726873	5.7445437161393	5.54909899364803	5.6627029136897	5.86226372815594	5.64967490773076	-0.171425497758495	0.514663020694103	0.777156159784444
Merged-chr10-111957906-4	chr10	111957816	111958016	+	899.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14779.0	NM_178610	52705.0	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	4.55842514861694	4.36139326781112	4.15886296757361	4.28934787494075	4.42376837182463	4.5258752251114	4.61111216339547	4.51743581752992	0.399064332032729	0.281920278755416	0.594029802150557
Merged-chr6-18845847-5	chr6	18845763	18845963	+	765.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-2772.0	NM_133939	76522.0	Mm.275158	NM_133939	ENSMUSG00000044155	Lsm8	2010003I05Rik|AW214405|Naa38	LSM8 homolog, U6 small nuclear RNA associated	protein-coding	5.06438983042595	4.50058995056796	5.21907084858612	3.34260829658424	3.89945414250137	4.53560384223528	4.42281275958748	4.52677201374484	-0.763119921143108	0.353446797089081	0.660273623806948
Merged-chr4-119233747-3	chr4	119233634	119233834	+	934.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042411)	promoter-TSS (NM_001042411)	-95.0	NM_001042411	56401.0	Mm.27961	NM_019782	ENSMUSG00000028641	P3h1	2410024C15Rik|Gros1|Lepre1	prolyl 3-hydroxylase 1	protein-coding	4.09919694269278	3.59687623585892	3.73487230592579	3.81871039708315	3.70649587940778	3.68272825583718	3.77103637461996	3.78449774954365	-0.255886516891237	0.58356534832008	0.817221790684748
Merged-chr11-98954175-3	chr11	98954114	98954314	+	840.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-6257.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	3.04184043844215	2.89322272069124	3.22078001288263	3.19464377711083	3.16679377184205	3.21468621843407	3.09353477286001	3.32537652928314	0.394899211760375	0.485600089002888	0.759392932927686
Merged-chr9-60478159-3	chr9	60478062	60478262	+	701.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040426, intron 3 of 17)	intron (NM_001040426, intron 3 of 17)	32873.0	NM_001040426	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	3.46134937570807	3.49733275804453	3.73349511090872	3.7124247115377	3.46384129265005	3.51460454434962	3.89743385571938	3.73127169223366	0.147943033850034	0.76566151036606	0.908347289015397
Merged-chr7-100493331-4	chr7	100493211	100493411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011671)	promoter-TSS (NM_011671)	-47.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	7.44249235517801	7.38556341560994	7.09772499255007	7.00645751441079	7.28158137100427	7.48513627983639	7.10924404578961	6.88301840407713	-0.0409478029381238	0.851469998747299	0.944001480340706
Merged-chr6-66395353-2	chr6	66395253	66395453	+	842.0	f0_balb.idr|f0_c57.idr	Intergenic	MLT2F|LTR|ERVL	122848.0	NR_136927	102633773.0	Mm.272086	NR_136927	ENSMUSG00000107653	Gm31520	-	sterol-C5-desaturase pseudogene	pseudo	3.74501247105013	3.91566779677606	4.24114289297659	3.98365782618966	5.33088710579716	4.61754359657287	5.09738159195147	5.09387476276831	2.3934225836816	4.92804528737742e-09	2.77080742532334e-07
Merged-chr1-74387034-4	chr1	74386931	74387131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013612)	TTS (NM_013612)	-4578.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	7.80547835462753	8.01601640868452	7.87518347568326	7.77444103139968	7.99474975239102	8.16542972380614	8.07218648699346	7.86246004597068	0.205114648910236	0.219791228328584	0.527410375380775
Merged-chr12-3892891-4	chr12	3892781	3892981	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 1 of 17)	intron (NM_153743, intron 1 of 17)	1137.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	5.85992934932568	5.42943105674345	6.02461904318917	6.09018754523474	5.36164543071433	5.47078000240773	5.23039437025177	5.74248440315062	-0.707041762569803	0.0186379244730753	0.122134857859421
Merged-chr16-17718030-4	chr16	17717927	17718127	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285886, intron 1 of 16)	intron (NM_001285886, intron 1 of 16)	4873.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	4.23661094761723	4.59262781379423	3.94307204403845	3.94707532978276	4.07438406861952	4.22406106391844	4.03171494090491	4.31929263171699	-0.097923814675306	0.824603214755156	0.932696938095671
Merged-chr3-87971356-3	chr3	87971224	87971424	+	784.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016701, exon 1 of 4)	exon (NM_016701, exon 1 of 4)	231.0	NM_016701	18008.0	Mm.331129	NM_016701	ENSMUSG00000004891	Nes	AA166324|C78523|ESTM46|Ifaprc2|Marc2|RC2	nestin	protein-coding	3.11702831135503	2.99345433366629	3.01038262717882	3.09693537802356	2.61321738994524	2.64876175449544	2.82115829213785	2.69428119522719	-1.80035103529417	0.00717701833243674	0.0620737446266742
Merged-chr11-50245435-4	chr11	50245332	50245532	+	945.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6900.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	5.04196444120351	5.36578899569941	4.90352082849651	5.39257959306561	4.60521246912815	4.75181697206134	4.98501630544022	4.82457863058832	-0.820341557019682	0.0156749077128615	0.108144252795752
Merged-chr10-21847201-4	chr10	21847125	21847325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34959.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	5.9654971784944	6.30236278998104	6.19160802606721	6.25063813482572	5.92680251952414	5.95090185434218	5.79494368870684	5.82032550830102	-0.493861068061763	0.0396935824641781	0.200806645786619
Merged-chr10-117897378-4	chr10	117897269	117897469	+	940.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-28090.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	4.68859207909329	4.07149834774074	4.19121495756062	4.82733150799061	4.00552295682951	4.1567603288941	4.63191232226952	4.65140921228034	-0.23522794307592	0.61120693400904	0.832251183300101
Merged-chr17-80768187-4	chr17	80768069	80768269	+	930.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40144.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	4.72273259875507	4.85861006561208	4.60107752599398	5.00588704334215	4.86651927145785	4.64445323705364	4.91384823438246	4.68095110958127	-0.0757292815016996	0.826442549438634	0.933439451388329
Merged-chr4-155784261-4	chr4	155784195	155784395	+	900.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033394, exon 2 of 2)	exon (NM_001033394, exon 2 of 2)	1579.0	NM_001033394	320587.0	Mm.384382	NM_001033394	ENSMUSG00000073680	Tmem88b	A230069A22Rik	transmembrane protein 88B	protein-coding	4.63588538796779	4.50474692514975	5.0973548311001	4.36681261730925	4.31473111502783	4.60004871383633	4.4910163263669	5.03755034984745	-0.0773604646331359	0.851783321256409	0.944100387750672
Merged-chr6-146120343-4	chr6	146120254	146120454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 55 of 56)	intron (NM_019923, intron 55 of 56)	186232.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	7.21854375478348	7.33287765668132	7.57723807114641	7.50933818701802	7.41758871831217	6.97759134684797	7.23818299405955	7.26942292558668	-0.238731360348753	0.22499408241841	0.533383973104412
Merged-chr3-157576137-3	chr3	157576035	157576235	+	943.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359745, intron 1 of 3)	intron (NM_001359745, intron 1 of 3)	9243.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	3.38491881657761	3.56360710505323	4.23904786662676	3.90888491472048	3.63376484863839	3.70102270431986	3.79016251251387	4.19909740454152	0.0950357854199046	0.860172187227464	0.947128143348069
Merged-chr15-100422215-3	chr15	100422085	100422285	+	877.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008732, intron 1 of 16)	intron (NM_008732, intron 1 of 16)	870.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	3.14700399223702	3.05130178590201	3.20959012237599	3.27452440834309	3.48395616626002	3.32125732185708	3.56063497101924	3.20800646119316	0.803714357444553	0.137686408053975	0.412754101366077
Merged-chr1-77761598-1	chr1	77761498	77761698	+	818.799988	f0_c57.idr	Intergenic	Intergenic	-246510.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	3.0841068857403	3.07094568480828	3.08442348303724	2.92791491699106	4.49555499693514	3.94350518713905	4.63228255708307	3.95722942026171	4.18625384013792	1.43994011377552e-10	1.07548265853544e-08
Merged-chr4-145242937-4	chr4	145242861	145243061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	3909.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	4.89818620401155	4.80214326441517	4.8273040075983	4.61258260608174	4.78642034051783	4.67275191091899	4.90941751581895	5.20283870274424	0.264127740309369	0.43985458488432	0.727425871224001
Merged-chr2-46360507-4	chr2	46360394	46360594	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	663889.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	5.05566304373117	5.08117761997415	5.54747372162833	5.4555376250382	5.36930204305147	5.2354376210705	5.68463399812964	5.51787303910632	0.264387947161615	0.390573054537492	0.69058015678842
Merged-chr7-120901847-4	chr7	120901746	120901946	+	920.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267710, intron 17 of 17)	ORR1E|LTR|ERVL-MaLR	-15898.0	NM_025298	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	4.69119082520792	4.49293725953948	5.15691731902367	5.21105133609527	4.96579688773564	4.73845971015558	5.46716812839406	4.95961215802614	0.246923458546555	0.52278273653035	0.782124816686504
Merged-chr13-43752581-4	chr13	43752442	43752642	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57D|LTR|ERV1	-32570.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	4.48991557983228	4.18282179938804	4.49062261058385	4.71378540600788	4.64436167878139	4.66319760005959	4.24429593435333	4.71669072113861	0.188267029544373	0.630531300098942	0.84289819838062
Merged-chr1-74773289-4	chr1	74773205	74773405	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009526, intron 1 of 3)	intron (NM_009526, intron 1 of 3)	1413.0	NM_009526	22420.0	Mm.268282	NM_009526	ENSMUSG00000033227	Wnt6	AA409270|Wnt-6	wingless-type MMTV integration site family, member 6	protein-coding	5.9647640632071	5.91470790912336	6.24623038798378	6.31838471878649	5.882626876974	5.52729292191856	6.26658467014214	6.06894789222129	-0.259821541490085	0.345065234624672	0.653383164862993
Merged-chr7-130819022-4	chr7	130818933	130819133	+	941.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081038, exon 12 of 16)	exon (NM_001081038, exon 12 of 16)	44964.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	4.31370264410614	4.60190610330948	4.4011625983426	4.42190899686745	4.56325355330821	3.81899786765482	4.38116122936687	4.43958430312932	-0.23204795724132	0.582864969152713	0.816800457529993
Merged-chr7-4685131-4	chr7	4685020	4685220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360629)	promoter-TSS (NM_001360629)	-139.0	NM_024172	66245.0	Mm.6803	NM_024172	ENSMUSG00000063802	Hspbp1	1500019G21Rik	HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1	protein-coding	8.42344352186374	8.43800001202631	8.2492738299329	7.88938234327259	8.52559993951746	8.76120072271876	8.41588165093724	8.30138559481965	0.317115421309841	0.101180004287077	0.349182619401206
Merged-chr2-30801206-3	chr2	30801104	30801304	+	851.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198000, exon 1 of 7)	exon (NM_198000, exon 1 of 7)	533.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	3.31860357782869	3.39434175883016	3.37691198776325	3.18286473944768	3.10352169879207	3.43435208436872	3.18424110507791	3.8029390743663	0.317735579917121	0.573156209880122	0.811692154196247
Merged-chr2-68907840-4	chr2	68907759	68907959	+	947.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	L1MB3|LINE|L1	46418.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	4.87835107960333	4.83427362132542	4.61672548095593	5.12938637996362	4.682153317057	4.74995363753805	4.37142921427762	4.65468099313866	-0.569670255222041	0.114409044492861	0.374111448085574
Merged-chr14-55757785-3	chr14	55757662	55757862	+	744.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009894, intron 2 of 4)	intron (NM_009894, intron 2 of 4)	662.0	NM_009894	12684.0	Mm.466766	NM_009894	ENSMUSG00000022219	Cideb	1110030C18Rik|AI790179|CIDE-B	cell death-inducing DNA fragmentation factor, alpha subunit-like effector B	protein-coding	3.49252987902912	3.79258552598915	3.38108283714104	3.3274502064724	3.23556900235524	3.60949895573027	3.30944456865631	3.31964731121844	-0.469321851634364	0.384382651568177	0.685951673034199
Merged-chr10-128747818-4	chr10	128747723	128747923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253704)	promoter-TSS (NM_001253704)	-56.0	NM_030100	78428.0	Mm.27358	NM_030100	ENSMUSG00000064030	Pym1	A030010B05Rik|Pym|Wibg	PYM homolog 1, exon junction complex associated factor	protein-coding	6.52162992339042	6.16658454574141	6.21614361129001	6.76188916931317	6.42437814817277	6.69809775577067	6.05631079509767	6.50201857112884	-0.0238791811531151	0.927540846144822	0.973537659073704
Merged-chr8-35826486-4	chr8	35826421	35826621	+	780.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027998)	promoter-TSS (NM_027998)	38.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	4.02675817421881	3.7757786856834	4.11932983058498	3.63159711365914	4.1527301313283	3.55717982746789	4.33948250930912	4.28252392110736	0.59826265361907	0.219689643305764	0.527345281266327
Merged-chr5-118413570-4	chr5	118413469	118413669	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-147150.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	5.17180696080395	5.48379066399931	5.07546820749595	5.25489965793539	5.16099864116712	5.03337746826881	5.05080888669093	4.68244210822622	-0.486452363472137	0.131741656899939	0.404170189899083
Merged-chr9-109876115-6	chr9	109876042	109876242	+	905.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007658, exon 1 of 15)	exon (NM_007658, exon 1 of 15)	563.0	NM_007658	12530.0	Mm.307103	NM_007658	ENSMUSG00000032477	Cdc25a	D9Ertd393e	cell division cycle 25A	protein-coding	4.16971633943733	4.27657596225655	4.29542767728464	3.84654778843838	3.90949921798331	3.99846763635708	4.1074846166291	3.92783109912738	-0.427674089684833	0.328397858505066	0.6398683630487
Merged-chr16-87755098-4	chr16	87754996	87755196	+	899.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56142.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	4.193189218775	4.07040320810772	3.98334600146767	4.29234948826968	4.67592071760145	4.70267120377936	4.22304049085815	4.45418072108538	0.889873673467999	0.0271569530166094	0.156874270310764
Merged-chr9-120885194-3	chr9	120885099	120885299	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30051.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	5.22509771346938	4.76665086580298	5.06193929979642	5.41106758730427	4.02129258759862	4.05112224870519	4.15327326104079	4.56470751357001	-2.09021072346068	3.97479085140672e-07	1.50490232985255e-05
Merged-chr18-70568245-4	chr18	70568169	70568369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311071)	promoter-TSS (NM_001311071)	-23.0	NM_001311071	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	7.58154961543542	7.77785080745163	7.59198876191441	7.69860155622429	7.94511923988204	7.98668488906283	8.37214118451629	7.65766652463681	0.452453682311346	0.022232361210982	0.137463276462517
Merged-chr9-55545733-2	chr9	55545633	55545833	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027397, exon 6 of 6)	3' UTR (NM_027397, exon 6 of 6)	4584.0	NM_027397	104360.0	Mm.273996	NM_027397	ENSMUSG00000032318	Isl2	3110001N10Rik	insulin related protein 2 (islet 2)	protein-coding	2.68542373337256	2.59493263279348	3.01237963549353	2.59412549615027	2.57425177522201	2.58923083159408	2.40504894281498	2.4839724752309	-1.11262385905718	0.120395403125949	0.384115840390046
Merged-chr7-98534690-4	chr7	98534603	98534803	+	881.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40481.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	4.17282933647653	5.00578287794214	4.42291486463918	4.01561537976909	5.15993514527657	4.50865173888282	4.68510235067358	4.4648131873068	0.602691664797241	0.186034731874889	0.483993006368217
Merged-chr6-99490050-4	chr6	99489950	99490150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	30943.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	7.2407770529881	7.08617795708509	7.22072728178732	7.32198420104081	6.98656736143062	6.90522393071191	7.07267606568554	7.13816606044095	-0.270251111193599	0.148430774872661	0.430159770557433
Merged-chr14-79290799-4	chr14	79290715	79290915	+	982.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025427, intron 3 of 4)	intron (NM_025427, intron 3 of 4)	10820.0	NM_025427	66214.0	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	5.0601729401093	4.80167628220845	4.89383464839242	4.79552580197874	4.65470548173133	4.99449959354226	4.93930620961205	5.02587487793397	0.0367749111434513	0.911489250374392	0.96695373445261
Merged-chr1-170959976-4	chr1	170959884	170960084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010187)	TTS (NM_010187)	16087.0	NM_010187	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	5.69417287972565	5.23682873718895	5.34559577544255	5.76913505313691	5.31269497300053	5.35915813438492	5.37915584860291	5.73715656512249	-0.154554891322161	0.612156495886503	0.832680684364583
Merged-chr7-136377957-4	chr7	136377865	136378065	+	902.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	UCON26|Unknown|Unknown	-28550.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	4.43154371532252	4.29196895195142	4.43222265404408	4.46244987529845	4.97162782257204	5.03478396098633	4.96619866261476	4.60370434371316	1.05420754292638	0.00264623224955198	0.0289823304032713
Merged-chr4-127077471-4	chr4	127077370	127077570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285885)	promoter-TSS (NM_001285885)	87.0	NM_001285887	100177.0	Mm.276096	NM_177462	ENSMUSG00000042408	Zmym6	9330177P20Rik|AI593204|AI661340|D4Wsu24e|Zfp258	zinc finger, MYM-type 6	protein-coding	7.35602437963793	7.74223449810032	6.83460948354389	7.06793646968699	7.76577647366046	7.63237176046296	7.48228440163811	7.26796687227476	0.344787260448286	0.154865908133653	0.440269481011378
Merged-chr1-91757570-3	chr1	91757444	91757644	+	812.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43917.0	NM_007855	13345.0	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	3.62542256381603	3.48799371506316	3.85751059337071	3.62010958322788	3.47342545892984	3.39056441275369	3.45058665932652	3.46164612979886	-0.677595864998823	0.175244163040234	0.469925568152531
Merged-chr10-117860534-4	chr10	117860442	117860642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14568.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	7.58348950065283	7.61758554831798	7.6193756122016	7.6500125365548	7.47991208799884	7.47808646856538	7.57349161878837	7.63947456320044	-0.102242157035539	0.538033033792874	0.791302215268364
Merged-chr5-139382929-4	chr5	139382793	139382993	+	974.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	2254.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	5.02935622463451	4.86719273098513	5.90616223762857	5.71704383947242	4.76733299280822	4.59013378769372	5.29283640501611	5.16344200504179	-0.871607405437513	0.0309693683419889	0.17092541048442
Merged-chr9-53667507-4	chr9	53667409	53667609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027807)	promoter-TSS (NM_027807)	-2.0	NM_027807	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	6.59678622723394	7.04683299730682	6.86701578408313	6.92978900313246	6.92216820491922	6.77544782950039	6.8051058788383	6.88876512962951	-0.0349433238186927	0.863949599859881	0.948894455369976
Merged-chr11-115413383-4	chr11	115413293	115413493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347645)	TTS (NM_001347645)	6526.0	NM_027862	71679.0	Mm.371641	NM_027862	ENSMUSG00000034566	Atp5h	0610009D10Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	protein-coding	6.5604300703166	6.83498772368135	6.08140373076002	6.2462952355371	6.66019172173154	6.85879747221957	6.51200248245282	6.5245395174021	0.269392660767217	0.284645417699058	0.5964138879162
Merged-chr17-24937044-4	chr17	24936912	24937112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163447)	promoter-TSS (NM_001163447)	-35.0	NM_013931	30957.0	Mm.43081	NM_013931	ENSMUSG00000024163	Mapk8ip3	BB120594|D17Wsu15e|JIP-3|JSAP1|JSAP1a|JSAP1b|JSAP1c|JSAP1d|Jip3|Syd2|mKIAA1066	mitogen-activated protein kinase 8 interacting protein 3	protein-coding	7.38109612457336	7.61899985260241	7.23435805135033	7.58245054095216	7.27895086412351	7.52896924522965	7.36549433170301	7.30536344900592	-0.138558421810013	0.461804753063117	0.743501704400988
Merged-chr19-28990388-4	chr19	28990287	28990487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302443)	promoter-TSS (NM_001302443)	35.0	NM_025950	67072.0	Mm.78875	NM_025950	ENSMUSG00000024780	Cdc37l1	2700033A15Rik|BB159850|Cdc37l|Harc	cell division cycle 37-like 1	protein-coding	7.89027900336025	7.93903595877111	7.68729597207231	7.95318411598305	8.00907204545537	7.86485005651946	8.02862378849841	7.75658177980989	0.059424756748414	0.726345127950607	0.891034932051019
Merged-chr3-116205653-4	chr3	116205536	116205736	+	843.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47848.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	4.44451044737754	4.36161437893474	4.40367226893074	4.90756059104696	4.02082266540156	3.88779615348272	4.4246378655332	4.52145945628632	-0.765705773579488	0.0829932852314048	0.312973724476088
Merged-chr6-129049287-4	chr6	129049197	129049397	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_024263, intron 1 of 4)	intron (NR_024263, intron 1 of 4)	3396.0	NM_153094	232408.0	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding	5.22351732127848	5.59912129730527	5.34592687657192	5.65007767560293	5.0562458610487	5.15800147476773	5.02996702263674	5.22081501680377	-0.671044611593008	0.0256476850597992	0.151050055350836
Merged-chr6-94045341-3	chr6	94045246	94045446	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029850, intron 1 of 23)	RMER15|LTR|ERVL	-131656.0	NM_001083320	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	5.33278609556151	5.99137470070523	6.09887909743724	6.46464180616532	4.50776218245795	4.4100399862052	4.99724113188126	4.76283403951547	-2.49604337890967	5.33699020626281e-11	4.26354237813221e-09
Merged-chr13-21753806-5	chr13	21753599	21753799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178201)	promoter-TSS (NM_178201)	213.0	NM_178183	319169.0	Mm.370338	NM_178183	ENSMUSG00000063021	Hist1h2ak	-	histone cluster 1, H2ak	protein-coding	5.08424293486664	5.37406327285119	5.59373941842253	4.64018628917567	5.27766363801215	5.582968957454	5.68183162251027	5.61412022685303	0.600037177918496	0.0835764713260172	0.314305907166342
Merged-chr5-111178734-4	chr5	111178635	111178835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 5 of 22)	ORR1E|LTR|ERVL-MaLR	-151962.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	6.48552391536442	6.38577276782131	6.30622113147855	6.71074305639208	6.54818514427555	6.3409423027526	6.77616584213058	6.49872726068482	0.0813690374998939	0.723511696423743	0.889624450832197
Merged-chr5-88519452-4	chr5	88519352	88519552	+	807.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_152839)	TTS (NM_152839)	8445.0	NM_152839	16069.0	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	4.16565938998216	4.13301649856106	4.30881962772416	4.3726831783282	4.78420178347461	4.52505418094175	4.41672062241239	4.16382423456335	0.572395765320371	0.153614492952041	0.438382086193301
Merged-chr1-189868253-2	chr1	189868153	189868353	+	713.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008976, intron 18 of 18)	intron (NM_008976, intron 18 of 18)	54038.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	2.72891515089099	2.71859928135851	2.72931355385347	2.38891118846409	2.42587182919286	2.35673435190135	2.60039352168002	2.25384901244082	-1.28275707679244	0.0952486356023107	0.337769162691155
Merged-chr16-92880911-2	chr16	92880811	92881011	+	902.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54837.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	3.76066450362106	3.26285896752593	3.39773445128847	3.07061516315667	2.89670910644543	3.07762393478128	3.0263969353985	3.34198838926956	-1.13932401848826	0.066381540990472	0.274643786686864
Merged-chr13-81110353-4	chr13	81110242	81110442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	146268.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	5.57357687263832	5.55314675294478	5.51721504593302	5.82918314040489	5.81377484251385	5.60457224728303	5.94831884072532	6.03416091277239	0.358652433722839	0.182602370476518	0.479233234647102
Merged-chr13-6889631-4	chr13	6889560	6889760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-240889.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	7.69468697959726	7.62437428159599	7.53781853392265	6.72249483431969	7.38871027162198	7.33494745575023	7.64262601665757	7.49661996852256	0.0425570061135132	0.863755023238612	0.948812409760272
Merged-chr2-50674515-4	chr2	50674405	50674605	+	903.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34A|LTR|ERV1	-235179.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	4.3380147126869	4.28650881994915	4.16788873864885	3.78213092346357	4.05150335790919	4.29486530876388	4.39490478702788	3.73779544196352	-0.0261259966925825	0.954993239456519	0.983968035425149
Merged-chr4-117478294-3	chr4	117478177	117478377	+	955.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025739, intron 2 of 14)	intron (NM_025739, intron 2 of 14)	18775.0	NM_025739	66743.0	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	4.10343429446765	4.22356090160196	4.27296322554914	4.32058613203121	4.02014784982248	3.92025242923383	3.66752241022385	3.73939343837271	-1.04304415510966	0.0185725775942327	0.121874942433843
Merged-chr7-133776784-4	chr7	133776692	133776892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025850)	promoter-TSS (NM_025850)	11.0	NM_001286032	101437.0	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	6.70633195745043	6.6295627401196	6.52724167950157	7.19167893754923	6.93200004092049	7.01440228779216	6.90836015292705	6.87371711546023	0.1669605410032	0.47336938156723	0.751141895891108
Merged-chr10-40499501-4	chr10	40499382	40499582	+	976.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70880.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	5.05531294451517	5.13091528011592	5.25912559016147	4.71684503677598	4.86206043448933	4.78745580290324	4.34613774686401	4.92017483303792	-0.589471907212753	0.108797557378083	0.364112826505448
Merged-chr10-16714705-1	chr10	16714605	16714805	+	562.0	f0_balb.idr	Intergenic	Intergenic	381077.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	3.19634969727545	2.98026897579413	3.4717505603766	3.28113257910405	3.15622801348241	3.48347124196109	3.24441327523992	3.31207481828808	0.205568426547478	0.712708025587957	0.884988964481272
Merged-chr3-138531750-4	chr3	138531652	138531852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007917, intron 2 of 7)	intron (NM_007917, intron 2 of 7)	4484.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	5.29311920043686	5.22202439401817	5.3574262672328	5.50523246534333	5.68291266454249	5.53351914492623	5.72343573694154	5.7259007065527	0.527208847117589	0.0537470182402629	0.241992473358446
Merged-chr16-92864304-4	chr16	92864207	92864407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38233.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	7.81181542402646	7.67739367293042	7.64291747268588	7.55961234801758	7.79502702894866	8.09229596231798	8.08181424273268	7.57541250262421	0.29963086137674	0.113127337176737	0.371758574926268
Merged-chr15-76825720-4	chr15	76825637	76825837	+	902.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-7567.0	NM_198420	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	4.82916891317387	4.42200715615325	4.28669142580625	4.36603051494107	4.74292732765715	4.55456223265723	4.11655537249344	4.50541996989224	0.047246856413939	0.907244705013047	0.96565361691694
Merged-chr6-94274126-1	chr6	94274026	94274226	+	885.0	f0_balb.idr	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	9791.0	NM_010367	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	3.25378040953066	2.92310116997747	3.30429380782408	3.64866495196559	2.47426633272399	2.79918600217807	2.60383158016133	2.76394191808009	-3.64519273314828	4.20273941266826e-05	0.000972518818772152
Merged-chr1-180279999-2	chr1	180279899	180280099	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23699.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	3.25061148487862	3.58553246323381	3.36799700071744	3.07152560682691	3.52485960723025	3.4826371156751	3.11295111006011	3.3090774186133	0.155819432932221	0.781687453135886	0.915051907355632
Merged-chr9-108691562-4	chr9	108691454	108691654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008924)	promoter-TSS (NM_008924)	-589.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	7.40564689562833	7.00018535373622	7.49671791259303	7.19412474530133	6.96842988534666	6.56837047067848	7.37933809820812	7.13275061521251	-0.323260339742689	0.169640930461817	0.462321889663741
Merged-chr8-119926658-4	chr8	119926567	119926767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009462, intron 1 of 13)	B1_Mur4|SINE|Alu	16307.0	NM_001310630	22224.0	Mm.256910	NM_009462	ENSMUSG00000031826	Usp10	2610014N07Rik|UBPO|Uchrp|mKIAA0190	ubiquitin specific peptidase 10	protein-coding	5.51033480628638	5.22785925256418	5.34751655099137	5.43039643785521	5.01970680904192	4.60283630251597	5.40459538071916	5.7609257729615	-0.20850692833059	0.568042187271938	0.808443301698143
Merged-chr5-100536890-4	chr5	100536795	100536995	+	790.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359204, intron 7 of 10)	Tigger17a|DNA|TcMar-Tigger	18586.0	NM_001359204	26891.0	Mm.957	NM_012001	ENSMUSG00000035297	Cops4	AW208976|D5Ertd774e|SGN4	COP9 signalosome subunit 4	protein-coding	3.55407552659984	3.48838490804961	3.82657000880524	3.70200535248351	3.77766081398775	3.73165822065722	4.03185185183565	3.96335562848079	0.670410570327437	0.148606374447284	0.430423321537467
Merged-chr9-40701890-3	chr9	40701786	40701986	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	RLTR12D|LTR|ERVK	15922.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	5.91019659649491	5.72698789942049	6.04055235140428	6.31841466601972	4.78843235769525	4.33787030012927	4.36995383670721	4.97429673159278	-2.54160294837894	6.19209999245570e-12	5.80987362452859e-10
Merged-chr19-6933983-4	chr19	6933905	6934105	+	805.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008431, intron 1 of 6)	CpG	510.0	NM_008431	16528.0	Mm.12894	NM_008431	ENSMUSG00000024957	Kcnk4	Catsperz|MLZ-622|TRAAK|TRAAKt|Tex40	potassium channel, subfamily K, member 4	protein-coding	3.44852102802621	3.48500184755769	3.38719711692566	3.59798288231096	3.77826043341343	3.56395608518266	3.70452672883208	3.89964427558979	0.783748143584967	0.105684065117776	0.35800904583182
Merged-chr11-77688002-3	chr11	77687893	77688093	+	949.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024205, intron 1 of 3)	intron (NM_001024205, intron 1 of 3)	1854.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	3.59899830475044	3.78599824679533	3.47919372399458	3.76446932108697	4.05524967406153	3.97971564362478	3.64156950809403	3.5975855848522	0.496962206055523	0.307336168746611	0.619572934043702
Merged-chr11-60114412-3	chr11	60114302	60114502	+	813.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009021, intron 1 of 5)	intron (NM_009021, intron 1 of 5)	9389.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	3.30219083707282	3.16384318615645	2.97791683974003	3.00287783605004	2.77133573798139	2.95659280890108	2.69875156872862	2.97642440205445	-1.161266536809	0.0663519625047515	0.274574168560069
Merged-chr10-70287918-4	chr10	70287815	70288015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42639.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	5.52490120900654	5.07830273942715	5.55259650200084	5.62395112070427	5.4057489882637	5.33116593649719	5.67299707556384	5.76643828092676	0.145967853451589	0.626705352378772	0.840727549606008
Merged-chr12-83949956-4	chr12	83949861	83950061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023633)	promoter-TSS (NM_023633)	-647.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	5.10427021745822	5.25005405064007	4.93456643758601	4.87952614957737	5.05208803681316	5.07250574437123	5.04809709642223	5.00213128883166	0.00623027117330081	0.984124508788646	0.994237242628259
Merged-chr5-77463776-3	chr5	77463674	77463874	+	878.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1714.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	3.69015090458324	3.4534581593846	3.69068564615191	4.05941799686002	3.12866579832939	3.86163487072055	3.51271901297728	3.68852294765869	-0.549603362883692	0.329669128331564	0.641029267112484
Merged-chr16-10488055-3	chr16	10487936	10488136	+	938.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007575)	promoter-TSS (NM_007575)	-142.0	NM_007575	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	4.14373611477486	4.15435714048908	4.00616790909528	3.91612918799346	3.91451166823129	3.91599011896647	3.94020571799565	4.22609801354596	-0.127294670604753	0.765621202591017	0.908325048600833
Merged-chr6-129423880-4	chr6	129423778	129423978	+	956.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172732, exon 6 of 6)	3' UTR (NM_172732, exon 6 of 6)	15016.0	NM_001205364	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	4.79480206331428	4.98011035342748	4.53783117140705	4.87773921039761	5.02792158868427	5.08074441802009	4.88400040675558	5.19032427689026	0.458056255950924	0.163042377941649	0.452638301786679
Merged-chr6-72748649-4	chr6	72748536	72748736	+	883.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	40409.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	4.57125987257498	4.30169897187016	4.60866159620661	4.47563616278121	4.03052983385104	4.50026830658536	4.16605720212702	4.45230154480302	-0.473936205701849	0.23283724355733	0.542464407511367
Merged-chr8-3500466-4	chr8	3500373	3500573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053177)	promoter-TSS (NM_053177)	-46.0	NM_053177	94178.0	Mm.8356	NM_053177	ENSMUSG00000004567	Mcoln1	2210015I05Rik|TRPML1|mucolipidin	mucolipin 1	protein-coding	7.2106855690772	7.59121994445015	7.29974091726841	7.23003437080682	7.43495924841743	7.55874024144222	7.31509243416849	7.33633820990725	0.0993205443747332	0.599936822073927	0.826630462424748
Merged-chr1-30873849-4	chr1	30873719	30873919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10563.0	NM_001081080	213109.0	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik	PHD finger protein 3	protein-coding	7.11236481928114	7.22658009620163	7.62982156979317	7.244997956176	7.0850697326323	7.36104712401059	7.18155482797629	7.30868083427708	-0.109938131064476	0.584712313380002	0.817725463637045
Merged-chr9-37530225-4	chr9	37530121	37530321	+	907.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136939, intron 1 of 6)	intron (NR_136939, intron 1 of 6)	2132.0	NM_027102	69524.0	Mm.41751	NM_027102	ENSMUSG00000001946	Esam	2310008D05Rik|Esam1|W117m	endothelial cell-specific adhesion molecule	protein-coding	4.07137010187576	4.20754420171366	4.47221811286611	4.22041518639467	4.4637861411797	4.14284648285245	4.33247396392092	4.39068543393435	0.234390195266171	0.550965342618078	0.798797129613765
Merged-chr12-98290661-4	chr12	98290582	98290782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	22047.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	6.01818934216569	5.51869980988185	5.93252932674877	6.19622090180361	5.9590722965387	5.94138801716849	6.02945232752218	5.90567485194654	0.00955221840367548	0.971539823691916	0.989698355367312
Merged-chr10-39067160-4	chr10	39067061	39067261	+	700.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010681, intron 16 of 37)	B1F1|SINE|Alu	66739.0	NM_001359442	66337.0	Mm.45187	NM_183254	ENSMUSG00000051736	Fam229b	1700025K23Rik	family with sequence similarity 229, member B	protein-coding	3.56943094043398	3.65962459866364	3.63161127038198	3.90746143812495	3.99425751456903	3.9224510877517	3.9805126525244	4.31519367029641	0.95803663057055	0.0408923717675129	0.204458986375372
Merged-chr9-55170940-4	chr9	55170860	55171060	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346658, intron 3 of 12)	intron (NM_001346658, intron 3 of 12)	20877.0	NM_001346658	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	5.18798418741854	5.0739275464903	5.0693302167855	5.04927197842649	4.52546877965203	4.80204647655934	4.64551260451354	4.93382677149708	-0.744728680164127	0.0242828152473643	0.145637555316156
Merged-chr5-21218113-4	chr5	21217992	21218192	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 6 of 26)	Tigger17a|DNA|TcMar-Tigger	31825.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	5.15226195923034	4.94609569225855	5.18321080653087	5.08448427000342	5.00704035699711	4.98158491999115	5.00079818682089	4.76160344701764	-0.285524944183734	0.361339097880823	0.66667409966046
Merged-chr18-50052856-3	chr18	50052742	50052942	+	757.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134131)	promoter-TSS (NM_134131)	-440.0	NM_134131	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	3.19850062456503	3.23270961390421	2.94070756368031	2.97864896588397	3.19938644188658	3.31143294517261	3.39940635140294	3.25448400249787	0.77482631696031	0.159183758905704	0.446506178087528
Merged-chr2-160268099-4	chr2	160267997	160268197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59397.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	6.50398789564777	6.4458185523807	7.03952441336821	7.32199084912617	6.19938368655035	6.35556407791781	6.38378353956534	6.6754961130986	-0.693844256684269	0.0119628603611188	0.0897264950099131
Merged-chr3-83790016-6	chr3	83789919	83790119	+	908.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	23698.0	NM_009144	20319.0	Mm.19155	NM_009144	ENSMUSG00000027996	Sfrp2	AI851596|Sdf5	secreted frizzled-related protein 2	protein-coding	3.60131746480016	3.36738641122571	3.34938042634845	3.21569277185113	3.11961489031863	3.28180310692384	3.27994013226075	3.29053943953017	-0.521958359154326	0.336339892807095	0.646375426192914
Merged-chr11-117385046-4	chr11	117384936	117385136	+	853.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29353.0	NR_132097	105827746.0	Mm.388009	NR_132097	ENSMUSG00000086588	Gm11729	-	predicted gene 11729	ncRNA	3.77041698616132	4.0449546760211	3.65557709023474	3.74088252765618	4.24127381998176	4.14517028691914	3.64228768915529	4.01896460145954	0.621671179584553	0.181505044752642	0.478215473095442
Merged-chr10-44511227-3	chr10	44511132	44511332	+	915.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52484.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	3.70255572559799	3.79301764653162	3.30527023700726	3.70003799229893	3.43673120656899	3.66338852403127	3.41956622148265	3.65110376800626	-0.318209332396638	0.53130613989132	0.787150106804684
Merged-chr14-73140737-4	chr14	73140610	73140810	+	963.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1800.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	3.84780722848588	4.3292325487003	4.53289753727489	4.04422944716391	4.06662675153459	4.42931755246198	4.36246504763522	4.01463985285971	0.0439346527228319	0.920762863725568	0.970622554300086
Merged-chr5-109690891-4	chr5	109690810	109691010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131917.0	NM_001310694	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	7.14027093532931	7.30791523925945	7.1536950241263	7.26469236765122	7.51398884507548	7.78390755716048	7.83402579782605	7.70682123511846	0.646534911836773	0.000319319436942545	0.00533165334321685
Merged-chr2-39373274-4	chr2	39373180	39373380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146931.0	NM_024209	67857.0	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik|Pp6C	protein phosphatase 6, catalytic subunit	protein-coding	5.49201462484374	5.98613669109414	5.43294488607435	6.12242992038573	5.7948317083002	5.54566361414709	5.93020429968469	5.62908932824838	-0.129617366245707	0.66821564216824	0.862850737330936
Merged-chr6-66537493-4	chr6	66537415	66537615	+	915.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355624, intron 2 of 5)	intron (NM_001355624, intron 2 of 5)	2294.0	NM_001355624	56150.0	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding	3.2886691860465	3.42168956977767	3.54523969563853	3.69655100885274	3.9501706677441	4.10987012998223	3.53184523776526	3.7578170295424	1.03634427680243	0.0457924021316153	0.219492080223989
Merged-chr1-131096995-4	chr1	131096892	131097092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	CpG	851.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	7.46196224651385	7.75112765011166	7.79613453821667	7.26982022268404	7.26471587649298	7.38845998518391	7.86962121188264	7.18192926604614	-0.169539150050699	0.459643928904049	0.74208997902975
Merged-chr13-30696092-4	chr13	30696000	30696200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 3 of 7)	intron (NM_134068, intron 3 of 7)	36041.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	6.72610201023388	6.14034482436667	6.48051715310812	6.68548890505162	6.75651698363233	6.72286399238295	6.37763342543589	6.42372120415518	0.0764694476693629	0.752347459111678	0.902425600431109
Merged-chr2-48615924-4	chr2	48615816	48616016	+	812.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-198193.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	3.89208569862693	4.32582410375356	4.3537621619831	3.68729599777386	4.0044142075999	4.2230823780235	4.16963420798632	4.0947288960903	0.0960691719380614	0.833571905164466	0.936365732465896
Merged-chr6-127155079-4	chr6	127154981	127155181	+	779.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040275, intron 1 of 1)	CpG	-4033.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	4.09338027527031	4.01182060437364	4.09399205475025	4.1175849809113	3.89610221897399	4.06791149375194	4.24875498890222	4.18158896239245	0.0432956394501359	0.916499541126023	0.969045329388458
Merged-chr8-122948863-4	chr8	122948734	122948934	+	801.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	93450.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	3.83088916952962	3.50183993654911	3.46652699630234	3.6921652213915	3.86189875908696	3.64125730891264	3.32982351640547	3.73519092823788	0.0936493534997559	0.853738119745647	0.944903737664624
Merged-chr6-29736204-4	chr6	29736075	29736275	+	885.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_176996, exon 1 of 12)	exon (NM_176996, exon 1 of 12)	678.0	NM_176996	319757.0	Mm.29279	NM_176996	ENSMUSG00000001761	Smo	E130215L21Rik|Smoh|bnb|smoothened	smoothened, frizzled class receptor	protein-coding	4.80530376283641	4.92760050293929	5.22171633321789	5.03587817945645	4.70446672603796	4.68977055918136	4.9252104452327	4.64201491065862	-0.536015772447834	0.109437542030497	0.365262551996626
Merged-chr7-16582408-4	chr7	16582322	16582522	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172739, intron 1 of 6)	intron (NM_172739, intron 1 of 6)	-31402.0	NR_136928	102634559.0	Mm.421602	NR_136928	ENSMUSG00000100583	Gm29443	-	predicted gene 29443	ncRNA	5.0507260232025	4.91808785872356	5.11878816378585	5.50975241336346	5.18463790953556	4.96343944374269	5.06095403718939	5.26903354612259	-0.119754377335813	0.71734440927262	0.886969736012834
Merged-chr3-88746444-4	chr3	88746355	88746555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018804, exon 4 of 4)	3' UTR (NM_018804, exon 4 of 4)	26144.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	6.90553096500083	7.43616516543695	6.35108028202053	6.44418916475778	7.22450397870295	7.38686520197218	6.76151343490399	6.670259980371	0.260788566148357	0.386917695664951	0.68794281367211
Merged-chr13-41583863-4	chr13	41583688	41583888	+	866.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEb|LINE|L1	-22428.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	3.66992361305839	3.63257187780356	3.67041708269307	3.5623455745716	4.00933369543985	3.89617538956575	3.81004691321136	3.82403068514413	0.784583882543759	0.0777998196086879	0.301651234335265
Merged-chr13-26317231-4	chr13	26317122	26317322	+	943.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-4816.0	NR_045933	73576.0	Mm.45473	NR_045933	ENSMUSG00000084811	1700092E19Rik	-	RIKEN cDNA 1700092E19 gene	ncRNA	3.91953083946483	4.48591271138227	4.29750551484363	4.24109820626653	4.64586060911324	4.90011116665796	4.60524633443059	4.24705455568518	0.831306829773855	0.0415991735727842	0.206528240905596
Merged-chr1-106695953-4	chr1	106695849	106696049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	ORR1F|LTR|ERVL-MaLR	18341.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	6.59886582748072	6.47932437582161	7.09175422220703	7.3727540001028	6.797647862899	6.4803655636174	7.05597186097583	7.02898083300294	-0.124209739419404	0.648802891915841	0.852432727220627
Merged-chr11-20741078-4	chr11	20740980	20741180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181411, intron 1 of 8)	CpG	476.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	5.17929192102028	5.22251955304426	5.47740650259574	5.13024469863794	5.44583523895125	5.45123765733256	5.3399850654849	5.39155411518044	0.29206927940637	0.305376761376371	0.617810092886016
Merged-chr17-73973734-4	chr17	73973616	73973816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23520.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	5.4013724548474	5.40675028283146	5.30857806550007	5.70857341768034	5.66146486833391	5.45326216771044	5.73687525456427	5.61898772434951	0.235087439330276	0.404129817086413	0.701308146631732
Merged-chr16-15890130-4	chr16	15890029	15890229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007679)	TTS (NM_007679)	2843.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	5.88864100938511	5.97619809287387	6.06596431144845	6.32822401046506	6.09729185410434	5.77819561407695	5.90590614271632	5.99843163635426	-0.212196354083487	0.405527215457457	0.702341680428793
Merged-chr10-24490682-4	chr10	24490576	24490776	+	959.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104766.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	4.32801735378722	3.8748009390513	4.07854316128318	4.32909266897914	4.44544636111638	4.88711669816973	4.55471208199972	4.64653653499164	1.05802297764747	0.00921439742790429	0.0744293684204266
Merged-chr2-52378605-4	chr2	52378501	52378701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-39803.0	NM_010889	17996.0	Mm.389247	NM_010889	ENSMUSG00000026950	Neb	AI595938	nebulin	protein-coding	5.48826618284357	5.28495998755889	5.16893426958548	5.08021863695613	5.97236586681622	5.71992064749038	5.88735223489214	5.6938884700035	0.997165225320834	0.00028069681569782	0.00480512713914264
Merged-chr2-57116785-4	chr2	57116689	57116889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139509, intron 1 of 7)	CpG	-1751.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	6.93099614676498	6.99838838739919	7.61111899661455	7.73405550025298	7.42632505845075	7.26108884856573	8.10726989414799	7.76445773921862	0.404196719159238	0.134248210680879	0.40787320249506
Merged-chr5-102502600-4	chr5	102502521	102502721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146161, intron 1 of 8)	intron (NM_146161, intron 1 of 8)	21230.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	6.16728619332302	5.77850351292603	6.33363306126045	6.67207001793884	5.97763681545977	5.79209497097262	6.21246201127351	5.99640959873437	-0.445509139636962	0.118595808082458	0.38098709317603
Merged-chr2-129083712-4	chr2	129083601	129083801	+	911.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027192, intron 5 of 6)	intron (NM_027192, intron 5 of 6)	-17295.0	NM_009086	20017.0	Mm.259078	NM_009086	ENSMUSG00000027395	Polr1b	128kDa|D630020H17Rik|RPA116|RPA135|RPA2|Rpo1-2	polymerase (RNA) I polypeptide B	protein-coding	4.50034864821926	5.43145242957465	4.54803471088663	5.16359537315824	4.9668767503468	4.89726311878233	4.48126160441052	4.87029227071201	-0.323579766292024	0.428102303506058	0.719151653480075
Merged-chr2-170351699-4	chr2	170351560	170351760	+	828.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029815, intron 11 of 12)	intron (NM_029815, intron 11 of 12)	-4701.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	3.52316603445835	3.81245244761989	3.58335165221016	3.5044455497647	4.1790908913925	4.10667664878177	3.51080044732641	3.52181851199444	0.774630806636511	0.133115009125989	0.406303311945916
Merged-chr12-86078603-4	chr12	86078502	86078702	+	958.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009368, exon 1 of 7)	5' UTR (NM_009368, exon 1 of 7)	439.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	4.81266365748082	5.00960550002972	4.5458705591156	4.80422808389348	5.56951246619195	4.82353433335914	5.41223725776068	5.30646786413955	0.968525268160506	0.00467910477689928	0.0452349061979961
Merged-chr2-124657563-3	chr2	124657444	124657644	+	959.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199241, intron 8 of 17)	intron (NM_199241, intron 8 of 17)	3963.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	3.9692326839523	3.39850188665911	4.08951589532974	4.13584248357506	3.24610329395795	3.14640336908125	3.62164478063912	3.46092213484091	-1.79450552179382	0.00208361133113988	0.0241231898079385
Merged-chr9-50528043-1	chr9	50527943	50528143	+	707.333313	f0_balb.idr	intron (NM_011220, intron 1 of 5)	intron (NM_011220, intron 1 of 5)	598.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	3.9172563977537	4.21569977588132	4.15016685379545	3.78443245718751	3.73596797226937	3.7543542898773	4.08841622559834	4.10437440195564	-0.250168595944212	0.585674828800177	0.818337494389066
Merged-chr15-34082749-4	chr15	34082649	34082849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026002)	promoter-TSS (NM_026002)	30.0	NM_001357925	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	7.7951596853839	7.83709897875948	8.25357729533522	7.84688421699845	8.00445598676421	8.12248773718103	7.86417241782083	7.76731590478776	0.00527944084182725	0.977438216829996	0.991888117862217
Merged-chr7-99143395-4	chr7	99143273	99143473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2229.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	7.59635846604998	7.57220843681595	7.72259555793653	7.42429066690955	7.74119365198447	7.60649796564681	7.54281741273415	7.84486625197358	0.154191599368553	0.385573047481487	0.686973965429301
Merged-chr13-81104038-1	chr13	81103938	81104138	+	632.0	f0_balb.idr	intron (NM_054053, intron 88 of 89)	intron (NM_054053, intron 88 of 89)	139964.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	3.59702673372424	3.41447467875246	3.43467621957019	3.57124894418436	3.38557576139036	3.29213048899554	3.81172659035703	3.5435206146776	0.0406530607292755	0.937055806011428	0.977210490892393
Merged-chr10-84338943-4	chr10	84338835	84339035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101536.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	7.69594408544591	7.74638344070654	7.82899333574808	8.16394113558118	7.56694403872336	7.42920302262457	7.73100614566475	7.36960619413079	-0.461381277582	0.0184792519294656	0.121441664951291
Merged-chr8-120683723-3	chr8	120683622	120683822	+	852.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15402.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	4.16587281742005	3.47048974812061	3.8625579957073	3.69398255915521	3.97899383199702	3.76831726841781	3.79662216469573	3.75824869444524	0.0555622885286331	0.908952811674084	0.966156082397695
Merged-chr4-59783433-3	chr4	59783336	59783536	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013577, intron 1 of 4)	CpG	419.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	5.56688454766076	5.90046920326736	5.28683116723199	5.69947301479232	6.09134449598976	5.68757003439364	5.74519383439926	5.77045507736976	0.333332870587485	0.238741629256736	0.549112690369509
Merged-chr2-128718522-4	chr2	128718437	128718637	+	878.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	19622.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	4.3900472304742	4.12669563225719	4.79737503061487	4.91731871032182	4.23619647271795	4.27945652105028	4.28164569865241	4.34368335185707	-0.752506651531964	0.0733729398060878	0.291717222358011
Merged-chr16-21616031-4	chr16	21615956	21616156	+	911.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	78609.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	4.0178067568444	4.0964473603377	3.91786135982755	4.29568094336176	4.00298178865509	3.74494375237725	4.0935745029065	4.19577371327548	-0.218407067715194	0.619220242729401	0.836410309268939
Merged-chr13-113269997-4	chr13	113269898	113270098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60339.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	5.00234215588838	5.04813162870402	4.70768622461524	4.82702743154155	4.85517726933293	4.56443001122433	5.10306391615711	5.1544369667992	0.0783185102879325	0.819590088398181	0.930948039985942
Merged-chr6-24756590-4	chr6	24756495	24756695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029848, exon 3 of 5)	exon (NM_029848, exon 3 of 5)	8228.0	NM_029848	77042.0	Mm.66017	NM_029848	ENSMUSG00000029680	Hyal4	4632428M18Rik|CSHY	hyaluronoglucosaminidase 4	protein-coding	8.17666025763965	8.10736147823132	8.61126726012915	8.41902067907956	7.88677774629813	7.81270314332399	8.04678053376812	7.58257513629992	-0.642509675993621	0.000819335373741767	0.0114621604889083
Merged-chr5-111219850-3	chr5	111219750	111219950	+	980.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 6 of 22)	intron (NM_001267622, intron 6 of 22)	-110847.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	4.33322135411176	4.6378972069966	4.68068135518206	5.09160281055472	4.07804346610349	3.85349273312907	3.90674687688201	4.03492330065625	-1.8559533463491	2.9978549849988e-05	0.000726291082291456
Merged-chr17-24896501-4	chr17	24896397	24896597	+	958.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019730)	promoter-TSS (NM_019730)	-3.0	NM_019730	79059.0	Mm.430765	NM_019730	ENSMUSG00000073435	Nme3	1810009F08Rik|AI413736|DR-nm23|Ndk3|Nm23-DR|Nm23-M3	NME/NM23 nucleoside diphosphate kinase 3	protein-coding	5.57027021908832	4.79017204026606	4.67812191742934	4.88588982699983	4.90273840532512	5.01605243262445	4.95988278753464	4.6751210349862	-0.255846287918236	0.495358295842622	0.765662949047099
Merged-chr3-89474086-4	chr3	89474034	89474234	+	816.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	14563.0	NM_027348	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	3.33223645207942	3.45533266417082	3.22347845763534	3.41907348970927	3.09582782556855	2.93332223438876	3.21167465609563	3.10261931592018	-1.08835540321943	0.0566176629106603	0.249267976637354
Merged-chr10-20841618-3	chr10	20841517	20841717	+	953.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-110930.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	4.11936606131556	3.86681424355865	4.12002137762099	4.32108859541491	3.43095845217502	3.72249379979917	3.96804805870624	3.8328721634549	-1.07911129382718	0.0247541109506708	0.147494798539913
Merged-chr16-87700068-4	chr16	87699960	87700160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	1106.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	6.77522531414252	6.85135873832281	7.05619455631759	6.79155315533079	6.82612979670326	6.90944077640012	6.66890779781099	6.39219818420451	-0.215054464041191	0.320030395548867	0.631849648418196
Merged-chr19-47179045-6	chr19	47178896	47179096	+	838.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021360, exon 1 of 6)	5' UTR (NM_021360, exon 1 of 6)	176.0	NM_021360	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	3.41486987363445	3.08416794902404	3.46613707845198	3.12634345209495	3.07888397087554	3.3023953492562	3.11578428074679	3.46401470900979	-0.110480774181344	0.845611768229136	0.941557049643182
Merged-chr9-110297308-4	chr9	110297240	110297440	+	876.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7852.0	NM_001081381	72341.0	Mm.374250	NM_001081381	ENSMUSG00000054836	Elp6	2610001P13Rik|2610002I17Rik|AV159994|Tmem103	elongator acetyltransferase complex subunit 6	protein-coding	4.12981338939616	3.9184563414963	3.71965657205524	3.85667360451665	4.07409176781513	4.42289283564996	3.924671367047	3.98874496153924	0.542083525592581	0.217721220992229	0.524670033822185
Merged-chr8-117577189-3	chr8	117577065	117577265	+	822.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 9 of 32)	ORR1E|LTR|ERVL-MaLR	78890.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	3.22497959923005	3.0554745319542	2.92450232783877	3.00487477667111	2.9183824984765	3.22452102454763	3.10155035954484	3.16883776019125	0.198189058484748	0.730301976998297	0.893000516342052
Merged-chr4-154935192-4	chr4	154935111	154935311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7134.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	7.05334657871398	7.3029219454709	7.01670790524315	7.14052684646021	7.30465264612511	7.46927779532064	6.91690029482023	7.64312744221675	0.303658321995414	0.160427268454658	0.448621443584546
Merged-chr5-75154786-2	chr5	75154711	75154911	+	804.0	f0_balb.idr|f1_balb.idr	intron (NM_001347719, intron 1 of 15)	intron (NM_001347719, intron 1 of 15)	-1355.0	NM_001083316	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	3.0998195504063	3.43901893169194	3.21747355982082	3.28307520300987	2.88470063881989	3.33017088127511	3.02724254992792	2.828147430269	-0.967637864987753	0.11408924026779	0.373608669167326
Merged-chr3-152262169-4	chr3	152262073	152262273	+	942.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199465, intron 1 of 12)	intron (NM_199465, intron 1 of 12)	3622.0	NM_001357206	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	5.13878903279668	4.84814310153411	5.01460627195468	5.28248413147667	5.03158958486461	4.6279245169625	4.73861862810074	4.75759863499114	-0.557998266850819	0.102831581166844	0.35216269069915
Merged-chr10-17655696-4	chr10	17655604	17655804	+	971.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67524.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	5.26153295117879	5.182405686231	4.54854944383551	4.94823830731531	5.3010820607938	4.98309507456268	4.78440915134529	4.545753689448	-0.129627837267252	0.734579226640197	0.895082097863042
Merged-chr8-11479300-9	chr8	11479184	11479384	+	985.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011227)	promoter-TSS (NM_011227)	-785.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	4.80579987854862	4.78262842252503	4.87792661222896	4.97556450716018	4.76834368029637	4.69766487637882	4.58782094568325	4.90882157575306	-0.256287168607429	0.442425903496616	0.729114602217242
Merged-chr17-33358870-4	chr17	33358760	33358960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207541)	promoter-TSS (NM_207541)	18.0	NM_207541	224694.0	Mm.170029	NM_207541	ENSMUSG00000003929	Zfp81	AA409460|AA409461|C330034P10Rik|D330034E10Rik|Hszfp36|KRAB13|Zfp78	zinc finger protein 81	protein-coding	5.5852036429142	5.98709087698636	5.58616969431831	5.82365199684584	6.13297975643751	6.22056499188274	6.03576744323918	5.84500744460771	0.477431653990379	0.0641660164702813	0.269169783494705
Merged-chr7-28702923-4	chr7	28702829	28703029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9785.0	NM_001163702	233040.0	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	6.36213676575248	6.54986845921674	6.49008572416896	6.50231108557651	6.74299341085719	6.74976665921042	6.66218926711129	6.90594978463727	0.411004797948453	0.0437068545107025	0.212820171067644
Merged-chr13-24797794-4	chr13	24797684	24797884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-3873.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	4.09825770777252	4.18949885288668	5.29769278319407	5.0337662839465	4.62397285573335	4.16776609495315	4.82759984244235	4.74334248679014	-0.304261984525053	0.537952875446849	0.79126455418755
Merged-chr15-84321784-4	chr15	84321704	84321904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2916.0	NM_022321	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	6.16353010029211	5.87175756835417	6.49091025762666	6.568697632487	5.92070502191621	5.87493861843836	5.94384282234787	6.01487056419895	-0.58002307111696	0.0285768283963836	0.162271245985336
Merged-chr17-26533994-4	chr17	26533882	26534082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25510.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	8.29115913365157	8.52264864979908	8.65571970237778	8.57444808436246	8.21271256440296	8.27309907446016	8.20140441746504	8.36970833392252	-0.323920269350791	0.0424071185658089	0.209051616621352
Merged-chr7-44344842-4	chr7	44344757	44344957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034115, intron 21 of 24)	intron (NM_001034115, intron 21 of 24)	30173.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	5.46592362350545	5.76262132710243	6.0697509284337	6.11971006025149	5.71544950490605	6.14018776303913	6.01860099980288	5.98286509014461	0.112543495356836	0.688174708465667	0.872645510806949
Merged-chr13-112398313-4	chr13	112398214	112398414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65756.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	7.50569842304054	7.45682711714915	7.16790087701021	7.05703869464181	7.43290570841146	7.59053083675103	7.48772039610249	7.34887389651618	0.221699540012415	0.257927679354277	0.569755868563229
Merged-chr7-80554920-3	chr7	80554796	80554996	+	791.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19777.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	3.37339982180719	3.3003985789709	3.48118287879432	3.25485750531714	3.24459143551418	3.09684446760701	3.3042076220595	3.71268813676578	0.0338486919356369	0.951110665692093	0.982556219406068
Merged-chr4-59164180-4	chr4	59164075	59164275	+	956.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25375.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	5.3684327150725	5.66208975804105	5.6770116814547	5.9616520305367	5.80645237512291	5.06368577474168	5.74317412731135	5.54240494416172	-0.198605281476559	0.527899908202346	0.784584834242773
Merged-chr19-38030958-4	chr19	38030837	38031037	+	678.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 1 of 53)	RLTR26C_MM|LTR|ERVK	12640.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	3.96314208772341	3.76170632921058	3.76845054935845	3.86065616151269	3.89226989691832	3.83332279179946	4.03258603628433	3.47275531820589	-0.0417679340789571	0.928859382688445	0.974246378739237
Merged-chr9-80723850-3	chr9	80723760	80723960	+	976.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-258422.0	NM_022016	63859.0	Mm.422780	NM_022016	ENSMUSG00000032343	Impg1	A930015H12Rik|IMP150|SPACR	interphotoreceptor matrix proteoglycan 1	protein-coding	4.68155081204047	4.14552051144109	4.77621406026704	5.44962974624581	3.1925139045834	3.40215014159457	3.34433211789479	3.43463768917224	-5.77028419155588	8.25303710954191e-10	5.38444480678354e-08
Merged-chr17-71012132-3	chr17	71012030	71012230	+	650.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-7427.0	NM_010867	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	3.36211854453198	3.30331053643789	3.48025071002545	3.47891673908104	3.37329522279612	3.59740659442086	4.03736892382276	3.29797369341579	0.636383990286869	0.239906842413545	0.550399004463438
Merged-chr2-117121735-5	chr2	117121684	117121884	+	873.6400150000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277256, intron 1 of 4)	CpG	713.0	NM_033524	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	4.47040620330588	4.88073905929287	4.6616188478886	3.95459546900594	4.27975346288392	4.2740009285323	4.36623147170553	4.42649603480532	-0.44082238194026	0.312737531389959	0.624630357151774
Merged-chr7-136065897-1	chr7	136065797	136065997	+	865.5	f0_balb.idr	Intergenic	Intergenic	-202427.0	NR_102277	77383.0	Mm.227745	NR_102277	ENSMUSG00000110027	C030029H02Rik	-	RIKEN cDNA C030029H02 gene	ncRNA	4.29009674946106	4.20017689827651	3.70268548420679	3.80342986170172	2.91174783534294	3.52652720014741	3.5769556595176	3.19070566759643	-2.35467357320279	0.00024686882634908	0.0043142342722075
Merged-chr1-184771826-3	chr1	184771696	184771896	+	746.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39303.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	3.57534892329302	3.93003672327774	3.57578920889562	4.06548527065441	3.74238510728472	3.80830570700807	3.62077970949148	3.98072416066501	-0.0812308134170837	0.868900082206476	0.950884643021044
Merged-chr3-97609367-3	chr3	97609271	97609471	+	726.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026539, intron 1 of 22)	intron (NM_026539, intron 1 of 22)	819.0	NM_026539	68058.0	Mm.31761	NM_026539	ENSMUSG00000028089	Chd1l	4432404A22Rik|Alc1|Snf2p	chromodomain helicase DNA binding protein 1-like	protein-coding	3.56008764247288	3.32398926263421	3.83159884278823	2.97843226071803	3.29850472108558	3.39638804888724	3.4413925305889	3.21518143298888	-0.397679484913471	0.500613345199072	0.768867349183833
Merged-chr8-122259447-2	chr8	122259358	122259558	+	733.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22683.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	2.94571287774827	2.95139475852093	2.94608165018751	2.60518531425047	3.08025037788716	2.85291348290833	2.87263866542867	3.27162182668988	0.731146380730149	0.245100593972145	0.556190109935387
Merged-chr16-24626337-4	chr16	24626226	24626426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-95529.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	6.86048620149739	7.16777787219774	6.98864340109233	6.37862065674807	6.6991892207509	7.05123888105697	6.45830617495398	6.7304723054255	-0.171646200597182	0.502486119413457	0.769717422982556
Merged-chr13-60627145-4	chr13	60627037	60627237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	24926.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	6.60374313590354	6.36166215778988	6.84085333673279	7.16733971312307	6.19811887473306	5.73703366977671	6.39151773887536	6.50507619234977	-0.801457141581772	0.00455974989661356	0.0443515395689385
Merged-chr6-134141430-3	chr6	134141322	134141522	+	817.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	105722.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	3.38740475750095	3.48806284105671	3.49432504658745	3.79511629994244	3.04346904223188	3.18613865109269	3.31873338030063	3.20816008560547	-1.39132268190257	0.013208894891847	0.0960363564358302
Merged-chr12-8498781-4	chr12	8498611	8498811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007483, exon 1 of 1)	3' UTR (NM_007483, exon 1 of 1)	1298.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	6.73167021593861	7.13477014367723	6.56814478772013	6.3968926892243	7.31753213499047	7.22268997980586	7.21966858201805	7.2910288990235	0.740513963548878	0.00107202412025006	0.0142199571420621
Merged-chr2-103655274-4	chr2	103655149	103655349	+	831.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	88939.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	3.72331796331952	3.7188864727864	3.77545221421841	3.78098171849099	4.04758634929524	3.40524814670216	3.94534862534608	3.66807785036469	0.147135662939842	0.763775578209508	0.90738027641911
Merged-chr9-96438833-3	chr9	96438757	96438957	+	731.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39818.0	NM_011279	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	3.23775662121579	3.07265732813405	3.1219855684908	3.0968466524386	3.15225781677579	3.292508519257	2.91960934307869	3.43864624530784	0.317130190294345	0.577656802940058	0.814201742353153
Merged-chr10-5256904-1	chr10	5256804	5257004	+	794.0	f0_balb.idr	exon (NM_001347732, exon 64 of 146)	exon (NM_001347732, exon 64 of 146)	-62197.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	3.48764565087871	3.12210895367982	3.2447822688936	3.37812041105335	2.8982118391698	2.74841872101127	2.93455226304244	3.0082251733025	-1.78594058556037	0.00488068711854098	0.0467064302783851
Merged-chr4-141790808-4	chr4	141790724	141790924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172338)	promoter-TSS (NM_172338)	-180.0	NM_172338	214063.0	Mm.39102	NM_172338	ENSMUSG00000040697	Dnajc16	2900037O03Rik|4732437J24Rik|D030060M24|mKIAA0962	DnaJ heat shock protein family (Hsp40) member C16	protein-coding	8.59397389174561	8.65499838162698	8.33513624015951	8.11611120124593	8.59149257758709	8.73666166008201	8.43277264510289	8.17597428988612	0.0796391104825715	0.686550930237678	0.871787672169905
Merged-chr14-70817998-1	chr14	70817898	70818098	+	636.5	f0_balb.idr	Intergenic	Intergenic	-34935.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	3.20787506212317	3.31277942607343	3.09272729267544	3.27808347744438	2.99309406072446	2.85474609821241	3.19581072568664	3.09121129379084	-0.765019097009877	0.189437024506645	0.48830078827256
Merged-chr15-78246340-4	chr15	78246262	78246462	+	977.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 1 of 9)	intron (NM_008677, intron 1 of 9)	1551.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	5.1699573211656	5.88070731752515	6.10457178006533	5.51951223174741	5.61853031867823	5.79417259928726	6.07307908952284	5.5011216614048	0.0851173524112564	0.79120162622427	0.919010126517907
Merged-chr13-112439658-3	chr13	112439563	112439763	+	989.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24407.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	4.20746421577352	4.50438084732687	4.50829852745129	4.27869907387453	4.22137668507956	4.47387117843359	4.19014882185486	4.38535906627491	-0.140739559076226	0.71655873660608	0.886643627014433
Merged-chr11-97188100-4	chr11	97187991	97188191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008379)	promoter-TSS (NM_008379)	-199.0	NM_008379	16211.0	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	8.6759201028245	8.79502698008404	8.5096152972257	8.49041064970543	8.78911807241054	8.94371547458528	8.75390969681385	8.29282382570185	0.119041185655475	0.520034984496836	0.780488058121568
Merged-chr1-182951505-3	chr1	182951405	182951605	+	979.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3283.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	4.29560636563762	3.58733241562652	4.06331866267412	4.13275396690624	3.59266868611459	3.59697267712504	3.65181540338661	3.77498035443241	-1.14554825839775	0.0200495150076409	0.128244466995765
Merged-chr12-73967291-4	chr12	73967165	73967365	+	807.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178392, intron 1 of 9)	ID_B1|SINE|B4	2735.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	4.57221304028816	4.03146456848808	4.53633216129911	4.19178017698156	4.32626552465647	4.37243290005112	4.31563654114631	4.28812978860679	-0.0330145973611793	0.934578896577605	0.976356212091203
Merged-chr9-96143848-4	chr9	96143735	96143935	+	816.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177352, intron 5 of 16)	intron (NM_177352, intron 5 of 16)	24406.0	NM_177352	235533.0	Mm.213651	NM_177352	ENSMUSG00000041440	Gk5	AV095337|C330018K18Rik|G630067D24Rik	glycerol kinase 5 (putative)	protein-coding	3.12669796996144	3.52252642636383	3.33200236060422	3.60230821713052	3.57781985535715	3.73393410722498	3.69838266607838	3.6643132783703	0.782423881231038	0.138340659120479	0.413772156296184
Merged-chr10-121266426-1	chr10	121266326	121266526	+	657.0	f0_balb.idr	3' UTR (NM_029057, exon 12 of 12)	3' UTR (NM_029057, exon 12 of 12)	44970.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	3.06615417142428	2.90307459248261	3.22577721280489	3.21811775075041	2.5212046079287	2.92637897636065	2.74036706961979	2.94674292655882	-1.49274448936497	0.029151634655095	0.164135894521787
Merged-chr1-57430918-1	chr1	57430818	57431018	+	690.0	f0_balb.idr	Intergenic	Intergenic	-24244.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	3.14177018643231	3.4746789419706	3.20118779170339	3.32682082848536	3.0733923100114	3.05456623756844	3.18933885187055	3.07888953406998	-0.771639489559198	0.170941929220296	0.464071117837823
Merged-chr5-114806180-4	chr5	114806066	114806266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026718)	TTS (NM_026718)	7810.0	NR_027818	66236.0	Mm.268546	NR_027817	ENSMUSG00000072694	1500011B03Rik	AI415201|AV141149|AW556386	RIKEN cDNA 1500011B03 gene	ncRNA	6.33062741257447	6.5890498433975	6.15723982525248	6.46518471039181	6.29307824128909	6.39438464256335	5.8752485811087	6.36289059166875	-0.232526398320443	0.340592618172544	0.649688226489213
Merged-chr1-87901138-3	chr1	87901029	87901229	+	959.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177646, intron 3 of 29)	intron (NM_177646, intron 3 of 29)	-46830.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	4.58341215661865	4.20679738138474	4.27220337380278	4.82816228485621	3.63486293083125	4.15622916956991	3.90386765030613	4.2245704029536	-1.30540292634224	0.00485774941609305	0.0465181953031195
Merged-chr15-86167990-4	chr15	86167892	86168092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-17736.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	6.29872766123988	6.21751675947266	6.82552203869544	6.92427189270649	6.42854356804541	5.9122170683652	6.37721409042406	6.47392929460641	-0.430881257311072	0.116161587370705	0.377075323577067
Merged-chr17-80224512-4	chr17	80224463	80224663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355458, exon 1 of 3)	5' UTR (NM_001355458, exon 1 of 3)	112.0	NM_001355458	67242.0	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem nuclear organelle associated protein 6	protein-coding	5.88945111744451	6.17762463444744	6.54515483040717	6.07449891280882	6.10325210339601	5.9407951745099	6.04188833985266	6.30053179079711	-0.127774358734381	0.619389074109174	0.836558981917173
Merged-chr4-145270331-4	chr4	145270199	145270399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009401, intron 12 of 12)	intron (NM_009401, intron 12 of 12)	-23429.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	7.91301727706176	7.53958030239817	7.87322204367349	7.74822585984705	7.31774077633824	7.2623835110051	7.55586771615212	7.42031045537159	-0.502888923197673	0.00621906071581286	0.05573039439643
Merged-chr7-30957511-4	chr7	30957384	30957584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011680)	promoter-TSS (NM_011680)	-681.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	6.41387318952818	6.7690224678286	7.03596781184204	6.38233272987489	6.51869171406792	6.74590302958852	6.48672042941794	6.51540776710306	-0.144729973193293	0.550718507661507	0.798673593705145
Merged-chr10-51491381-12	chr10	51491345	51491545	+	989.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013532, exon 3 of 9)	exon (NM_013532, exon 3 of 9)	547.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	4.78531382397517	5.40661226866143	5.00918478830919	4.28082054433522	5.10326045514196	5.00371993586183	5.05055241303737	5.22445038032087	0.329364534275061	0.400654078072078	0.698409536969913
Merged-chr10-99641997-4	chr10	99641905	99642105	+	810.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038018)	promoter-TSS (NR_038018)	-85.0	NR_038018	100417125.0	Mm.391428	NR_038018	ENSMUSG00000112503	Gm18409	-	mediator of cell motility 1 pseudogene	pseudo	4.12866623279376	4.2481041281051	4.12929708966291	3.90375122952908	3.88552316185125	4.00244930388969	4.0655035603606	4.21404273813739	-0.148034492183544	0.727858061123975	0.891717234643631
Merged-chr1-175639980-3	chr1	175639880	175640080	+	785.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133809, intron 4 of 14)	intron (NM_133809, intron 4 of 14)	7787.0	NM_133809	98256.0	Mm.27217	NM_133809	ENSMUSG00000039783	Kmo	AI046660	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)	protein-coding	3.67265056334007	3.34107635994603	3.81248821873527	3.48209928443732	3.49974381299046	3.45246696293496	3.5565752011231	3.51470725379382	-0.242952344715707	0.629977431414373	0.842536537521168
Merged-chr11-100994812-4	chr11	100994637	100994837	+	901.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-14715.0	NM_016920	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	4.31216200993972	4.04985096147398	3.62002385783164	3.45592765873379	4.11737176610106	3.85803244636876	3.72196712191903	3.73470858077101	-0.0732374234561124	0.888714280788546	0.958307342699796
Merged-chr12-32111782-4	chr12	32111691	32111891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50512.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	6.38949082022267	6.15294137176851	6.16003695686221	6.45655689471434	6.56469354205872	6.31610954201611	6.45860137302382	6.50324209730623	0.238450816569889	0.288916411802155	0.600887718433427
Merged-chr15-6509049-1	chr15	6508949	6509149	+	725.5	f0_balb.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	63716.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	3.75686187248197	3.24620205889787	3.47265965907707	3.57495361316046	3.40929501425386	3.35216471827888	3.40493013177611	3.03286995852536	-0.742373010880141	0.185467054915467	0.483424619226162
Merged-chr13-67269781-3	chr13	67269656	67269856	+	926.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155551)	promoter-TSS (NR_155551)	-688.0	NM_001001152	238690.0	Mm.306358	NM_001001152	ENSMUSG00000055480	Zfp458	BC062958|Gm33446|Rslcan-7|Znf728|mszf59-2	zinc finger protein 458	protein-coding	3.22927007468112	3.12537506131373	3.22965110052774	2.62868517345731	4.4375087993653	4.57943907817057	4.01507410978886	4.79634559730232	5.22939538785684	1.24381399180693e-16	2.58869696265572e-14
Merged-chr10-87016567-4	chr10	87016484	87016684	+	915.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8642.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	4.08990587455978	3.88693017593131	4.04117646358655	4.52476372077459	4.31229995639266	3.94416747870208	4.07318346300923	4.38798927144391	0.0433486015937268	0.924158177974362	0.971922030555652
Merged-chr18-58699314-1	chr18	58699214	58699414	+	1000.0	f0_balb.idr	Intergenic	Lx7|LINE|L1	39832.0	NM_025478	66307.0	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	3.46595865605181	3.0851351039256	3.60396087242197	3.68536440402541	2.78175320367327	2.892261191923	2.85326778680288	3.13524859330921	-2.43712983858487	0.000338673018465827	0.00560744516896467
Merged-chr9-40238499-2	chr9	40238399	40238599	+	817.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30717.0	NM_001083917	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	2.59887230572042	2.95138288840872	2.8835944422035	3.12902608888094	2.82001041100013	2.99121946361362	2.93570611947154	3.21799325150205	0.356320986381937	0.592084835958105	0.821921141660887
Merged-chr15-81101491-4	chr15	81101371	81101571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	3576.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	6.85921020318069	6.83201628144872	6.73920705623786	6.67048416165664	6.5592182498966	6.7654700977035	6.23162012254682	6.29968782625906	-0.418677752645922	0.060981042346918	0.260988972142721
Merged-chr6-88830284-4	chr6	88830188	88830388	+	859.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11647.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	3.95262034797604	3.8026897752158	3.65603995261114	3.95334612473061	4.53807729761005	4.02297112957907	4.34119385664106	4.57263418137075	1.35515668385946	0.00193891649108014	0.0228493604169856
Merged-chr11-54998908-2	chr11	54998808	54999008	+	787.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013472, intron 13 of 25)	intron (NM_013472, intron 13 of 25)	34563.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	3.37582830064945	3.04072371974906	3.32258218566649	2.73833966262688	3.17573027880994	3.43901157059474	3.19558667253542	3.32064167699809	0.55962049170046	0.355751561586995	0.662447100122975
Merged-chr9-22390131-2	chr9	22390031	22390231	+	956.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028390)	promoter-TSS (NM_028390)	-925.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	3.53687187369229	3.48844491146921	3.37292884579776	3.20929534266152	3.47721966548259	3.60121488988931	3.10699407737818	3.58565961848879	0.19381278109512	0.718901974683755	0.887684154524562
Merged-chr2-170324312-4	chr2	170324264	170324464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31997.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	4.75612153684976	4.84146340941111	5.20252821931249	4.90539489858089	5.34241444564924	5.49514573343964	5.20745567750944	5.64346741006487	0.916854141384764	0.00312192892235326	0.0329625858983084
Merged-chr15-84139842-3	chr15	84139723	84139923	+	877.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16648.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	4.11264281358502	4.09800151085605	4.15760153812429	4.19447716227659	3.89983071271263	3.67787411547106	4.00266817492605	4.23910113438732	-0.46338034615614	0.286678814877918	0.598366997953062
Merged-chr18-13031860-4	chr18	13031747	13031947	+	888.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24857.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	3.64108955575772	3.86176024421896	4.45995028598293	3.86971486895951	3.93852023270093	4.04859241152911	4.05218892935661	3.97315286066279	0.0361303049101657	0.938701249444846	0.977759950372676
Merged-chr5-123171794-3	chr5	123171675	123171875	+	800.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008277)	TTS (NM_008277)	10948.0	NM_008277	15445.0	Mm.439709	NM_008277	ENSMUSG00000029445	Hpd	4HPPD|Fla|Flp|Hppd|Laf	4-hydroxyphenylpyruvic acid dioxygenase	protein-coding	3.69709815713717	4.10258940881843	3.58280205297942	3.77028996452797	4.09370577722205	3.81596634671883	3.62784799549345	3.69558969156991	0.0731190482808487	0.880883957567907	0.955289696285915
Merged-chr9-123953779-4	chr9	123953699	123953899	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	14893.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	5.18446460024065	5.16038107143572	5.55425973961617	5.55975567496231	4.81114461985948	4.92554777469037	4.77081597997199	5.15031882563036	-0.909150543857358	0.00517894976714791	0.0487544591291921
Merged-chr12-110850425-6	chr12	110850328	110850528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001199785, exon 1 of 7)	exon (NM_001199785, exon 1 of 7)	149.0	NM_028365	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	5.35532896145212	4.94257001101175	5.17767452204061	5.31096416239677	4.97990753166109	5.35144872252524	4.9829480705134	5.40673603253272	-0.0438171922344576	0.890668552629493	0.959104227034594
Merged-chr2-18655013-4	chr2	18654920	18655120	+	912.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-17442.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	4.43689824687432	4.73374894068229	4.76173170191532	4.74438313585881	4.78374844632762	4.31260088841364	4.77394987305977	4.68500399584385	-0.0447477290762424	0.901831097237528	0.963555825043109
Merged-chr8-46140503-4	chr8	46140398	46140598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16352.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	6.82182775367599	6.68747314842232	6.83686351148665	7.08451286787795	6.59950377769701	7.05370735480949	6.89458643828848	6.7757527202526	-0.0629390228436963	0.772393570045831	0.910868516556086
Merged-chr16-91366801-4	chr16	91366716	91366916	+	896.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5967.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	4.34221353309943	3.97095678454873	3.79303983517771	3.99046747005096	4.10732762750512	3.8544916014671	4.03393879196484	4.09495786612034	-0.0128197554428157	0.976616600394406	0.991663119295189
Merged-chr10-80900369-4	chr10	80900303	80900503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010722)	TTS (NM_010722)	566.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	4.98901887660331	5.0053389843507	4.75513310665419	4.7448955563519	5.30163137512014	5.26703720066611	5.06796946854179	5.53003688014475	0.821286775677978	0.00854890747130178	0.0703959607704523
Merged-chr17-36167833-4	chr17	36167713	36167913	+	985.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081032, intron 2 of 7)	CpG-6350	724.0	NM_001081032	667977.0	Mm.441651	NM_001081032	ENSMUSG00000073402	Gm8909	EG667977|H2-Tw5l|H2-gs17	predicted gene 8909	protein-coding	5.2304376084794	5.07362211761435	4.80116136491553	5.21569309122217	5.18565486843796	5.10057863316649	5.59170893842425	5.16536864595234	0.323131663016481	0.312199016807733	0.62411867603826
Merged-chr17-27826422-4	chr17	27826330	27826530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5888.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	7.41611798079985	7.80747034793807	7.18525465899216	7.38799846221233	7.49703465344687	7.29142210361885	7.23839740305171	7.04584607860983	-0.249937424643475	0.242415091501966	0.553144192657145
Merged-chr2-70889232-4	chr2	70889106	70889306	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-63726.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	4.72554005823392	4.41209594572977	4.60681321805581	4.63108984768087	5.11535068899701	4.86100339821755	4.66579884630669	4.76061774033134	0.57296416621915	0.100455831049127	0.347921492320569
Merged-chr10-68126271-4	chr10	68126178	68126378	+	881.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 7 of 9)	intron (NM_023598, intron 7 of 9)	146708.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	4.71458449783241	4.16672650271714	4.30731572134412	4.1032312478427	4.0848263216139	4.39086968545984	4.28785402118599	4.21396624389539	-0.21743816918371	0.603921235842282	0.828350269166784
Merged-chr4-141387562-3	chr4	141387475	141387675	+	771.266663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024412, intron 16 of 19)	B3|SINE|B2	10524.0	NM_001146307	12733.0	Mm.167900	NM_024412	ENSMUSG00000033770	Clcnka	C75963|CLC-K1|Clcnk1	chloride channel, voltage-sensitive Ka	protein-coding	3.33795217607493	3.26488063538879	3.15557350283788	2.78870304894702	3.47478978239552	3.33390109254672	3.57893493421159	3.44548282502457	1.17205879712311	0.040569750982253	0.203603913499668
Merged-chr11-97280523-5	chr11	97280437	97280637	+	986.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008942)	promoter-TSS (NM_008942)	39.0	NM_008942	19155.0	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	4.77179472114747	5.25604053464398	5.35890158003251	4.8630211991733	4.64569890891117	4.740250342456	4.66992688969614	4.72963186926072	-0.779429488855552	0.0269904391444828	0.156254775751536
Merged-chr19-44344075-4	chr19	44344034	44344234	+	918.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183216, intron 5 of 5)	B1_Mur4|SINE|Alu	10808.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	3.18273539078184	3.46664030016306	3.38094692717587	3.30447835296144	3.8544382003001	3.4967093706054	3.48462092337122	3.96119435947701	1.2382342236302	0.0160173606279678	0.109772743321598
Merged-chr8-106063266-4	chr8	106063169	106063369	+	819.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010901, intron 1 of 9)	B4A|SINE|B4	3666.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	4.28003271637333	4.64112513091669	4.32644748798612	4.14480988521428	4.51971289954319	4.36065018645845	4.26203785342691	4.56817323732253	0.197338022195882	0.615527244490033	0.834477192020031
Merged-chr9-105053346-4	chr9	105053250	105053450	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053159)	promoter-TSS (NM_053159)	82.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	4.61776992253957	5.01214761977723	5.19893465240818	4.83231336785669	4.97773796479938	5.04308824453995	4.98642288391842	5.22405738716408	0.257990169103978	0.433047679298621	0.722758873865112
Merged-chr2-104095892-4	chr2	104095827	104096027	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001111060, exon 1 of 5)	5' UTR (NM_001111060, exon 1 of 5)	126.0	NM_001111060	12509.0	Mm.247265	NM_007652	ENSMUSG00000032679	Cd59a	AA987121|Cd59|protectin	CD59a antigen	protein-coding	4.74959368741292	4.43698116766162	5.07344224961635	4.53306657949963	3.89419110826501	4.18110023855428	4.29391761941331	4.40162849241834	-1.20936460572302	0.00420971751332083	0.0417237625166691
Merged-chr10-77965177-2	chr10	77965077	77965277	+	992.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 4 of 33)	intron (NM_138301, intron 4 of 33)	4695.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	3.23657918739375	3.31195841175858	3.17853601846448	3.3466977802017	3.29281599430961	3.0925923362546	3.28023664538459	3.17699713437743	-0.220528187858918	0.683614396644506	0.870394242877558
Merged-chr9-95637813-5	chr9	95637684	95637884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029620, exon 1 of 9)	5' UTR (NM_029620, exon 1 of 9)	156.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	4.98317041000152	4.82380190443638	5.36958196798631	4.91651241976598	5.00089098887623	5.08730555368169	4.99387099075623	4.83385747324164	-0.0921047441261763	0.779647592459065	0.914092175648885
Merged-chr2-147009995-4	chr2	147009876	147010076	+	709.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3023.0	NM_001356403	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	3.779785159647	3.92001442534943	4.25736348550594	3.77578918151929	4.00428421394731	4.25748848318306	4.06902670391374	3.99031477927258	0.38629118050575	0.37832842626804	0.680920376588773
Merged-chr11-4237666-1	chr11	4237566	4237766	+	902.3333130000001	f0_balb.idr	intron (NM_001013365, intron 1 of 2)	intron (NM_001013365, intron 1 of 2)	881.0	NM_001013365	18413.0	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	3.74622574938956	3.22942802999573	3.78837485470463	3.60746746770682	2.76654546190348	3.14445607256616	3.09159262856965	3.16762945667957	-2.26401115482699	0.000486152355172299	0.00755872400367171
Merged-chr2-118479728-4	chr2	118479606	118479806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009273)	promoter-TSS (NM_009273)	-10.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	7.39710179654625	7.74656195376217	7.058674964962	7.57743379516453	7.48309974343387	7.57551803103019	7.33163334360133	7.31129540020239	-0.0629505602634471	0.762460477849188	0.906953230381981
Merged-chr7-73557905-3	chr7	73557817	73558017	+	993.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037569, intron 1 of 4)	CpG	478.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	4.49234404927893	4.34490224348274	5.09702803517513	4.3335883431429	4.74546679925982	4.75766918250468	4.42703853988844	5.22689121340558	0.466393873635754	0.263919051282756	0.575977131726361
Merged-chr13-65019493-4	chr13	65019392	65019592	+	984.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13566.0	NM_001083890	238683.0	Mm.295543	NM_001083890	ENSMUSG00000074849	Spata31d1c	4932441B19Rik|Fam75d1c	spermatogenesis associated 31 subfamily D, member 1C	protein-coding	4.83772018336176	4.80551026607707	5.28841003394155	5.7375515616167	4.98668662727145	5.24163817020873	4.97031572945293	5.4483739230038	-0.133583349126249	0.726121718130801	0.891025770427008
Merged-chr10-63386591-4	chr10	63386495	63386695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013888)	promoter-TSS (NM_013888)	32.0	NM_013888	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	7.12251522598626	7.32595934802201	7.25731942919785	7.16202864099988	7.22109401668269	7.39107863737526	7.2418959173021	6.6891827787086	-0.0760520482612375	0.720100376544166	0.888119741205493
Merged-chr14-48590125-3	chr14	48590030	48590230	+	900.6333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72604.0	NM_001360226	18424.0	Mm.134516	NM_144841	ENSMUSG00000021848	Otx2	E130306E05Rik	orthodenticle homeobox 2	protein-coding	4.94470637964693	4.91059433578646	4.52405915943698	5.18788732805142	3.25352224162213	3.68779302921634	3.68880557229333	3.55550413953141	-4.42159708056022	3.41297141729232e-12	3.35541287999241e-10
Merged-chr15-58145435-4	chr15	58145260	58145460	+	764.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029734, intron 1 of 5)	intron (NM_029734, intron 1 of 5)	3994.0	NM_001326599	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	3.85495100382049	3.7820865223076	3.26841499365866	3.7464340829219	3.67917454639353	4.02390214974411	3.74158397513732	3.75501814102095	0.346303672632102	0.489226641243361	0.761620931360531
Merged-chr6-115764241-6	chr6	115764134	115764334	+	975.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1768.0	NM_001168256	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	4.35365169827141	4.21667611019153	4.52203220973523	4.34194423169939	4.58120972095113	4.43686107578008	4.46151562157877	4.5577239436342	0.359678982331661	0.325107912132794	0.636647300475958
Merged-chr12-76255252-4	chr12	76255157	76255357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138745)	promoter-TSS (NM_138745)	25.0	NM_138745	108156.0	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	7.889748449795	7.9499564995787	8.05889946577166	8.19013410776684	8.11090149536472	8.30032207831553	8.390453089431	7.73484538492036	0.159891817862728	0.410906689287274	0.706273206869081
Merged-chr3-8984807-3	chr3	8984698	8984898	+	937.5277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	MER5A|DNA|hAT-Charlie	19406.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	4.05052227304361	3.66708536287451	4.05115683747903	3.9456189461423	3.58954511723562	4.08296007468373	3.68452001686779	4.00383480096796	-0.244377490851215	0.604684990790942	0.828509474255204
Merged-chr6-56797746-4	chr6	56797654	56797854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145958)	promoter-TSS (NM_145958)	59.0	NM_001362210	210973.0	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	7.93322214936684	8.23027570689521	7.99759677730853	7.91458251962863	8.19322436371169	8.20886762374055	8.05756346620777	7.81654265690119	0.0733859507645707	0.679133452472198	0.868317902828816
Merged-chr8-70693818-4	chr8	70693719	70693919	+	931.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3920.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	5.03535848679468	4.80681719714881	4.58946618914772	5.08853525499142	4.44775912550851	4.81048737648985	5.07207097509442	4.93498867181055	-0.156311319543794	0.669671068044328	0.86357079102718
Merged-chr6-135937550-4	chr6	135937491	135937691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008171, intron 4 of 14)	MIRb|SINE|MIR	235920.0	NM_008171	14812.0	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	5.5296704289423	5.61899434204223	5.99356094399204	6.20348970866221	6.57170081798365	6.50813408451621	6.63427303157433	6.21878847675623	0.919923184415383	0.000840522881889832	0.0117056502074029
Merged-chr16-92419204-4	chr16	92419098	92419298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-19120.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	7.56398354926527	7.61341965541051	7.38396276348724	7.38172326251423	6.07857297742032	6.09987059596059	5.93680804313221	5.93628827334131	-2.10337373082328	6.78733228301607e-23	3.22077016381867e-20
Merged-chr1-54828038-4	chr1	54827962	54828162	+	989.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 2 of 27)	intron (NM_001081433, intron 2 of 27)	98325.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	4.69620154560105	5.32143269845548	5.02920556594499	4.91742890330401	5.73880536015319	5.55387548364548	5.50975326320049	5.13150679520663	0.904258816442942	0.00551410400870802	0.0510520823667831
Merged-chr5-18043206-4	chr5	18043092	18043292	+	885.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80622.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	4.12363558217627	3.826967102357	4.12425375240131	4.43605762576262	4.07980366521552	3.80358017186464	4.31889140211642	4.37517442503535	0.00937259212732779	0.983658717997566	0.994100000074476
Merged-chr5-104459883-2	chr5	104459783	104459983	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008861, exon 1 of 15)	exon (NM_008861, exon 1 of 15)	426.0	NM_008861	18764.0	Mm.6442	NM_008861	ENSMUSG00000034462	Pkd2	C030034P18Rik|PC2|TRPP2	polycystic kidney disease 2	protein-coding	3.05883415081156	2.90873400258307	3.39599372051693	3.26492678740774	3.01830134586706	3.16930069567785	3.22590259932353	3.29140414518144	0.0135342094130545	0.981418941067734	0.993361854006063
Merged-chr10-118736284-4	chr10	118736189	118736389	+	976.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	132614.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	4.79829174209829	5.36496715426602	5.37720112060458	5.37108072979809	6.18991721156902	5.52446417354344	6.01111898463689	5.7947561436288	1.09796880769149	0.000437466155918823	0.00691999725588126
Merged-chr17-72837452-4	chr17	72837363	72837563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357370)	promoter-TSS (NM_001357370)	-73.0	NM_001357369	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	7.39675923100982	7.35477367873486	7.87118964614086	7.33465111271092	7.23982986183465	7.39449676384143	7.44726968939432	7.43194401950862	-0.165951185974943	0.41145111607443	0.706929588468231
Merged-chr5-24729859-2	chr5	24729759	24729959	+	808.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081441, intron 1 of 5)	intron (NM_001081441, intron 1 of 5)	821.0	NM_001081441	269633.0	Mm.392539	NM_026621	ENSMUSG00000055235	Wdr86	2810046M22Rik|BC059069	WD repeat domain 86	protein-coding	3.25709262092908	3.43479730622964	3.42944438794306	3.15646104799213	3.30888419453188	3.17089294906003	3.30491730586207	3.71368403811782	0.255401748703268	0.640448513867074	0.848189720270798
Merged-chr3-89997991-2	chr3	89997891	89998091	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045749)	promoter-TSS (NR_045749)	112.0	NM_001310681	23897.0	Mm.256035	NM_011826	ENSMUSG00000027944	Hax1	HAX-1|HSP1BP-1|Hs1bp1|SIG-111|Silg111|mHAX-1s	HCLS1 associated X-1	protein-coding	3.65386519246146	3.89951992151514	3.59733885461418	3.3114259845732	4.15493036439288	3.82903471471615	3.6939519299056	3.75928524460352	0.758283062095812	0.129344623777791	0.400249076096744
Merged-chr19-32804923-4	chr19	32804829	32805029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 5 of 8)	intron (NM_008960, intron 5 of 8)	47352.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	6.60484857483104	6.52487407777077	6.28638780967952	6.33145786330834	6.04943237720209	6.26641085011506	5.74850813278852	5.63048139987715	-0.750596578438464	0.00364668052303719	0.0372390557321291
Merged-chr6-115033727-4	chr6	115033610	115033810	+	904.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026894, intron 2 of 7)	intron (NM_026894, intron 2 of 7)	4164.0	NM_026894	68971.0	Mm.24937	NM_026894	ENSMUSG00000030316	Tamm41	1500001M20Rik|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding	3.95538205199626	4.26658182831766	4.00711557863742	4.43134076894736	4.17658680298007	3.71733428568651	4.13130104245622	4.14696058165445	-0.341934515338626	0.447935945002684	0.73332468018769
Merged-chr6-13665870-4	chr6	13665787	13665987	+	762.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175312, intron 1 of 4)	intron (NM_175312, intron 1 of 4)	12079.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	3.83015294270891	3.89084755856819	3.88027330034153	3.98146581152336	3.7186717652651	3.53368178522567	3.81492618196391	4.05856360870785	-0.309874731844773	0.502015934977318	0.769457185302407
Merged-chr1-152903784-3	chr1	152903702	152903902	+	996.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-603	-1156.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	4.73704034953932	4.88883260022319	4.57614842503185	4.54156338209087	5.08564058184644	4.7519472118149	4.55545918016892	4.80835713500193	0.29273661465575	0.411265026998725	0.706678093779988
Merged-chr18-32162943-4	chr18	32162842	32163042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011946)	promoter-TSS (NM_011946)	-147.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	9.02621889450721	9.26789176339715	8.82354146746597	9.1776917080841	8.94194780111265	9.16304259164454	9.12267267178279	8.98307635725111	-0.0425673402072304	0.791322555410957	0.919050824109746
Merged-chr14-103392575-4	chr14	103392488	103392688	+	873.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45788.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	4.02777660507713	3.86542041544045	3.93483691628422	3.9988381314608	4.04395987763049	3.78420945443771	4.09673332283299	3.60342164577552	-0.151919948897742	0.737297644592565	0.896374281276027
Merged-chr1-62701211-4	chr1	62701119	62701319	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2098.0	NM_001077406	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	5.2211010800454	5.6219416871649	5.40817576558536	5.42185425154788	5.49525017312233	5.06358992881167	5.66231046702678	5.46080772758899	0.026264518195921	0.929591612059252	0.974554847260704
Merged-chr4-150589225-3	chr4	150589139	150589339	+	983.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	62935.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	4.71265143259081	4.77022253063162	4.28216945957663	4.48364807156253	4.4230425939862	4.20687032557655	4.16778658449621	4.07862973010958	-0.798891592229966	0.0484460273886567	0.227194185189591
Merged-chr6-72115070-4	chr6	72114969	72115169	+	905.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	7871.0	NR_045163	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	4.75174135798096	4.23275434510927	4.00991466487984	4.28490723275985	4.4890611941685	4.13167762407698	3.83045483527616	4.41879305476151	-0.244060717385927	0.598973055316793	0.826146116839364
Merged-chr3-34020526-3	chr3	34020442	34020642	+	992.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113189, intron 1 of 16)	CpG	463.0	NM_001113189	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	4.67280972232821	4.63868698336183	4.78568308215406	4.59475529424693	5.00606562116968	4.59279568786783	4.651814431677	4.63089318705089	0.167045499814737	0.633805684858317	0.84487246179617
Merged-chr1-54443808-4	chr1	54443708	54443908	+	866.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4782.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	3.78137588239389	3.9497914724692	4.06180971198958	4.4248563324217	4.20502346884644	4.46223898783339	4.3538349902762	4.2898139448215	0.559441580466442	0.209683522309028	0.514175623015818
Merged-chr7-127296263-4	chr7	127296169	127296369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008400)	promoter-TSS (NM_008400)	9.0	NM_001253874	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	5.9311139112863	6.37604167597455	6.18442758971714	5.85807482152027	6.25310493906437	6.35894166722789	5.70205922007628	5.78022474952811	-0.0597641431710044	0.833468172538607	0.936308313522916
Merged-chr6-54117239-7	chr6	54117140	54117340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	77308.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	6.57447722077426	6.79480757723111	6.88808585350371	6.75200772588529	6.40476498494291	6.50480503509855	6.40658255015011	6.69370320195917	-0.36695976951497	0.0828961723921342	0.3127766009808
Merged-chr8-115398205-4	chr8	115398108	115398308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	308686.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	6.70159508754812	6.8911838911413	6.80781121629604	6.92196999506852	7.26196431662773	7.33701434770282	7.42504769832961	6.88726059000601	0.55883226603522	0.00672671651183672	0.05911852754612
Merged-chr8-20297542-4	chr8	20297444	20297644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030708)	promoter-TSS (NR_030708)	-112.0	NR_030708	547150.0	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	7.31745558964678	7.54909777500035	7.38026685490282	7.9318843327359	7.40435431481877	7.03237624377107	7.44877505381349	7.16896142573709	-0.403805988017365	0.0657152910670278	0.272905617457804
Merged-chr3-104992873-4	chr3	104992764	104992964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31155.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	6.80033608373053	6.87087586849107	6.57783150168807	6.44598842716545	6.47824687403902	6.5994034305909	6.88370903856718	6.82370440327681	0.0370430634655563	0.870347416363803	0.951342292562219
Merged-chr8-75086255-4	chr8	75086138	75086338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7380.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	7.95520982601712	8.36982333451145	8.41435366490174	8.07647432044937	7.79554854755904	8.05479293631511	7.79354403074393	7.42907629869656	-0.554877911394945	0.0058867301497764	0.053520113776034
Merged-chr19-42779795-4	chr19	42779738	42779938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001346703, exon 1 of 20)	5' UTR (NM_001346703, exon 1 of 20)	140.0	NM_001346703	192236.0	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding	7.50553065370244	7.48679274123437	7.87485170795114	7.36785530022374	7.48296214149989	7.67473390864243	7.46046793899774	7.60852301769776	-0.00939085841065402	0.960956287228568	0.986031655491274
Merged-chr2-60902725-4	chr2	60902637	60902837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-21299.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	4.62706546262148	4.81280521097464	4.83196286906824	4.90086580858729	5.08584709766021	4.96847154153058	4.98370009916127	5.12962827907798	0.470806718643865	0.139353528769411	0.415092267504098
Merged-chr3-60582287-3	chr3	60582188	60582388	+	790.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	81109.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	3.46885421614106	3.47578130517256	3.81666151149354	4.10430279595628	4.00422804367963	3.98779048195473	3.64050363186382	4.04606371940809	0.474367421612446	0.361946730363284	0.66726561498867
Merged-chr3-94814826-3	chr3	94814741	94814941	+	701.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22726.0	NM_001165948	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	3.97637910313609	3.76685081044147	3.84653279083778	4.07042530666308	3.26403675542793	3.46462287661257	3.33843859786902	3.47522700122358	-1.8293917688369	0.000406335477594371	0.00652731955759191
Merged-chr4-150860716-4	chr4	150860620	150860820	+	969.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133753, intron 1 of 3)	intron (NM_133753, intron 1 of 3)	5650.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	4.43525665465914	4.72044225794934	4.86985457659796	4.8984192100702	4.9635034598102	5.30616936423245	5.22338196233866	4.93833411339012	0.699333515329575	0.04086322501753	0.204367281251642
Merged-chr2-35449875-4	chr2	35449766	35449966	+	852.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	11583.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	3.96326132647321	3.89848105872293	4.4293141436558	4.58737178342801	3.71243258571425	3.66793609190485	3.99672200038537	4.05965161651476	-1.05746695281936	0.0291730929802754	0.164203035366363
Merged-chr13-23778482-3	chr13	23778386	23778586	+	943.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-4055.0	NM_001029935	214158.0	Mm.314151	NM_001029935	ENSMUSG00000064140	Trim38	Gm23	tripartite motif-containing 38	protein-coding	4.41094071324398	3.86468363160225	3.98841227166153	4.13028270878857	3.69811257217777	3.54199252537129	3.66525798500574	3.55604419422564	-1.44803754086711	0.00288644137958006	0.0310400379146592
Merged-chr5-33820398-6	chr5	33820251	33820451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-22761.0	NM_175231	107823.0	Mm.19892	NM_175231	ENSMUSG00000057406	Nsd2	5830445G22Rik|9430010A17Rik|AW555663|C130020C13Rik|D030027O06Rik|D930023B08Rik|MMSET|Whsc1|Whsc1l|mKIAA1090	nuclear receptor binding SET domain protein 2	protein-coding	6.44195978248561	6.167523759618	6.0058222419117	6.1772555846934	6.21255990137651	6.2906604592183	6.39401355329318	5.83182128585697	-0.00895156152792998	0.971345737994629	0.989667458652484
Merged-chr19-4060551-2	chr19	4060451	4060651	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1104.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	5.16778295200632	5.23075897701783	5.22841791347845	4.67589447956444	5.15943628940062	5.21383688672916	4.67099462040381	5.00222936532718	-0.0950811557193589	0.787268334532313	0.917465745172984
Merged-chr12-81751323-4	chr12	81751226	81751426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001174107, intron 2 of 10)	ID_B1|SINE|B4	29844.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	5.62358947420097	5.19676446023107	4.89280297968248	5.34627851609771	5.34348642475647	4.85588308314071	5.44974927073149	5.47360205329744	0.0249035101651731	0.940789477910825	0.978654793543509
Merged-chr7-35028820-4	chr7	35028715	35028915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	27751.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	7.75299252809981	7.72220369512916	8.33910371934079	8.39778725954295	7.51165192783925	7.54659316575986	8.0482849239723	7.83513579568674	-0.445708842634676	0.0542612926841139	0.243261914848246
Merged-chr15-78842695-3	chr15	78842636	78842836	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027219)	promoter-TSS (NM_027219)	89.0	NM_027219	104445.0	Mm.307488	NM_027219	ENSMUSG00000049521	Cdc42ep1	1810058K22Rik|AA980734|Borg5|CEP1|MSE55	CDC42 effector protein (Rho GTPase binding) 1	protein-coding	2.75957314846845	3.13353305646927	3.3145087859922	2.71386104388146	3.13456758857858	3.20871170823423	3.14166252405174	3.03374650648876	0.527876739577495	0.400502567737572	0.698297047011029
Merged-chr3-8767707-4	chr3	8767635	8767835	+	855.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-100697.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	4.25216712337399	4.07408715653573	4.33468918498776	3.92662488858892	4.09935390104369	4.14579904436952	3.90085249283387	4.29165169380079	-0.0680145303445516	0.872854962091019	0.952329867778884
Merged-chr8-24428576-3	chr8	24428479	24428679	+	851.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10367.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	3.04567677542232	3.09619420637993	3.16293096952598	3.04367534819708	2.91229202978244	3.21660755503471	2.90874852748314	3.16118535664352	-0.137195626379643	0.812207431452982	0.927446105799334
Merged-chr1-36684318-4	chr1	36684214	36684414	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1131.0	NM_201365	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	5.02900163885181	5.41173913997318	4.95664824227879	4.96943717119438	5.05539558367733	5.27376477805189	5.47201855631252	5.12885655319069	0.250828403499752	0.432306059678495	0.722377468409878
Merged-chr7-127011168-3	chr7	127011056	127011256	+	707.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080638, intron 1 of 14)	intron (NM_080638, intron 1 of 14)	3438.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	3.461426041201	3.37787510605176	3.01524518373515	3.17916689335101	3.39839888221484	3.57913260561956	3.27630490987498	3.83216095432612	0.921008822569082	0.0960601636305926	0.339614880398448
Merged-chr11-97629804-4	chr11	97629694	97629894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175332)	promoter-TSS (NM_175332)	-78.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	6.84038470859283	6.72226862570474	6.74354604327707	6.71628525339999	6.84059223046776	6.78195933209949	6.87217923941866	6.64831637771182	0.0549191684910763	0.779749913343439	0.91413591560747
Merged-chr8-14072735-3	chr8	14072610	14072810	+	609.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034862, intron 2 of 5)	intron (NM_001034862, intron 2 of 5)	17617.0	NM_001034862	234086.0	Mm.268896	NM_001034862	ENSMUSG00000051978	Erich1	-	glutamate rich 1	protein-coding	3.43390670053253	3.21009038903904	3.21288639723805	3.29399354670152	3.40874223381563	3.32397678267637	3.07669333856121	3.32663686150432	0.0149535530790134	0.977841983691797	0.992058247084457
Merged-chr18-73693661-3	chr18	73693550	73693750	+	762.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008540, intron 1 of 11)	intron (NM_008540, intron 1 of 11)	10091.0	NM_008540	17128.0	Mm.100399	NM_008540	ENSMUSG00000024515	Smad4	AW743858|D18Wsu70e|DPC4|Madh4	SMAD family member 4	protein-coding	3.45056431553438	3.77995993371494	3.17156765994446	2.98533854175586	3.13193576876642	3.22082845774988	3.16007448252208	2.96920546877698	-0.959014784044537	0.122092935022066	0.387242288214953
Merged-chr1-92106887-4	chr1	92106758	92106958	+	884.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 2 of 26)	intron (NM_207225, intron 2 of 26)	73483.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	4.09435334423703	4.10515732853329	4.44567568161791	4.60799978720713	4.09017743442136	4.45323244208609	4.21923285946661	3.93232955915324	-0.399094752831318	0.358296189540164	0.664320653179664
Merged-chr5-146805547-2	chr5	146805447	146805647	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10591.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	4.1371677860422	4.04797707993783	4.34573152096258	4.28512989816551	3.97477789067231	3.76977433901251	3.81876869733267	4.30400303631621	-0.593061613804049	0.178535564518482	0.474334131070851
Merged-chr13-37633168-4	chr13	37633049	37633249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-192889.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.8681368960476	6.03874208666693	5.97868036837109	5.86796097820078	5.97227299129269	5.51847981449742	5.66911844688706	5.77004019572426	-0.290555940571406	0.262146627048922	0.574100843086496
Merged-chr6-91776731-2	chr6	91776631	91776831	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159507, intron 17 of 23)	intron (NM_001159507, intron 17 of 23)	30662.0	NM_001159507	243547.0	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	2.95883839882319	2.97521934951989	3.02245489096509	2.88706085161831	2.88874798880343	3.25283490516153	3.18241166674871	3.13874847588	0.656604912687828	0.254189237920071	0.565563307364969
Merged-chr2-4567183-4	chr2	4567067	4567267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 2 of 11)	intron (NM_001177844, intron 2 of 11)	7413.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	6.37562760904132	6.07449995263796	6.32360859564763	6.25895252315673	6.23401118182212	6.42470391290043	6.27312303837984	6.3190866447944	0.0758404157000215	0.733747402758895	0.894646551297515
Merged-chr5-135956538-5	chr5	135956416	135956616	+	890.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17960.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	3.6753532346334	3.53433922428351	3.99294298489385	4.02864194015694	3.31693928510664	3.21975312481693	3.37769237579363	3.77257970239833	-1.26118930891388	0.0220830356947891	0.136856643118891
Merged-chr2-114201322-5	chr2	114201122	114201322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175466, intron 1 of 1)	CpG	210.0	NM_175466	228491.0	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	5.16333891008396	5.49781270106161	5.58285973961476	5.26655443147753	5.28363425820273	5.56595208730411	5.27220986161144	5.93109489004166	0.266498825238422	0.394164539318861	0.693362933574961
Merged-chr4-109119811-4	chr4	109119708	109119908	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	MTD|LTR|ERVL-MaLR	-1772.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	4.66209110367309	4.45968432132102	4.41027097529267	4.34675415559237	4.96329581581896	4.4934514086469	4.60240979607816	4.93307581665959	0.669654286671671	0.065760884419818	0.273028114332608
Merged-chr9-25539523-4	chr9	25539444	25539644	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	57947.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	4.82130601543522	4.95415304474092	5.83207017000621	5.53371753326774	5.22064989870574	4.87265080956084	5.3159908591496	5.18794718689063	-0.351950899749619	0.343144115829143	0.651847936494656
Merged-chr11-60219835-4	chr11	60219749	60219949	+	787.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358315, intron 1 of 18)	intron (NM_001358315, intron 1 of 18)	778.0	NM_011480	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	4.32738940631471	4.64106580731016	4.19330633051255	3.79653082327588	4.36552395837977	4.54119484930884	3.91713274393823	4.19072634782501	0.0100269791142903	0.982781999836465	0.993865312500427
Merged-chr1-64119776-7	chr1	64119678	64119878	+	977.488098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	1611.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	4.60666539798092	4.98011231589512	5.00226909419441	4.46937166971718	4.48347773038167	5.10943753770916	4.58613819166981	4.5617486662201	-0.153801045289393	0.692632142792136	0.87499975964798
Merged-chr5-24578318-1	chr5	24578218	24578418	+	540.0	f0_balb.idr	promoter-TSS (NM_001190443)	promoter-TSS (NM_001190443)	-851.0	NM_001190443	27407.0	Mm.21629	NM_013853	ENSMUSG00000028953	Abcf2	0710005O05Rik|Drr3|E430001O06	ATP-binding cassette, sub-family F (GCN20), member 2	protein-coding	3.19699455780394	3.44017143492621	3.68096016007155	2.97582968657638	3.24768380724725	3.37553297204166	3.42066255626538	3.48591695829103	0.141992376805788	0.804051571903835	0.924515209347214
Merged-chr8-106339040-4	chr8	106338930	106339130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-1042.0	NM_021491	58994.0	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	6.65412079876032	6.97561800260088	6.74499019353189	6.73769922477841	6.66136048616446	6.41618537178337	6.72494688403307	6.91484980182946	-0.129953403399562	0.546840940910245	0.796579001903773
Merged-chr2-35756695-4	chr2	35756590	35756790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029774, intron 9 of 9)	intron (NM_029774, intron 9 of 9)	59958.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	5.87370701616179	6.05776671897975	6.09182934969319	6.2249971685902	5.80706574539103	5.84765044969339	6.13751233132101	5.69306469176907	-0.316487413214215	0.212544054250094	0.517487068679264
Merged-chr11-63955195-3	chr11	63955102	63955302	+	874.761108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-9024.0	NR_131111	78883.0	Mm.410764	NR_131111	ENSMUSG00000086359	9630013K17Rik	-	RIKEN cDNA 9630013K17 gene	ncRNA	3.87807371983856	3.80727014440367	4.17595194906935	3.45003549135133	2.75550601064256	3.21815570855523	2.93396110125757	3.17064243321742	-3.5125251233145	3.36765323590321e-06	0.000104265415258092
Merged-chr2-136485939-3	chr2	136485845	136486045	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46376.0	NM_175667	319196.0	Mm.477841	NM_175667	ENSMUSG00000074771	Ankef1	AV276460|Ankrd5	ankyrin repeat and EF-hand domain containing 1	protein-coding	5.70648576711644	5.58975966164855	5.51592467909389	6.14765261175744	4.60173587965551	4.95178605991186	5.064757443931	4.76198797550994	-1.72813003057356	2.29034148467904e-07	9.09733351216347e-06
Merged-chr4-139743767-3	chr4	139743675	139743875	+	918.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011039, intron 8 of 8)	intron (NM_011039, intron 8 of 8)	89193.0	NM_011039	18509.0	Mm.218760	NM_011039	ENSMUSG00000028736	Pax7	Pax-7	paired box 7	protein-coding	3.48981563550696	3.14712224903099	3.33471458868744	2.48233697890257	5.09383200966669	4.54174394901025	4.62448231590759	4.6465570843645	5.22024850022996	4.76867755240586e-05	0.00108520045807322
Merged-chr2-103947053-3	chr2	103946971	103947171	+	923.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-10924.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	4.01510949075689	3.93095367018934	3.96970313715033	4.07684204574346	3.60263199005196	3.82984959213681	3.85637513159511	3.91963319647854	-0.585468454360666	0.187345146901656	0.485723035306802
Merged-chr16-45390025-4	chr16	45389934	45390134	+	958.5125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358443, intron 4 of 4)	intron (NM_001358443, intron 4 of 4)	19019.0	NM_001358443	17470.0	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	4.47870849559296	4.44648717495118	4.33735877757159	4.58813608224428	5.05429263309135	4.69933271753924	5.07935768277694	4.52066946910337	0.829703978855849	0.0241135936559632	0.144917083466029
Merged-chr1-93824809-2	chr1	93824709	93824909	+	966.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178882)	promoter-TSS (NM_178882)	-431.0	NM_178882	98314.0	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	3.36945739648153	3.29597342514816	3.7138547287367	3.2439506517164	3.05999271831885	3.1646519329212	3.29971704968721	3.57557482604964	-0.449377722327878	0.430940158495032	0.721325279470979
Merged-chr10-21609781-4	chr10	21609629	21609829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	16584.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	7.00345493245311	6.94567365786125	7.2219925127555	7.37788195072415	6.86251644244713	6.64740328755117	7.17529853504394	6.86822495088903	-0.352584042337945	0.105810852060975	0.358319170219713
Merged-chr9-85340488-4	chr9	85340367	85340567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13317.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	6.29944468006438	5.98361382834088	6.36942738432895	6.6651323533046	5.80975381618049	5.63508443158599	6.09873813599948	6.10537786685145	-0.677793847645443	0.0128077985995097	0.0941686082547774
Merged-chr11-68863949-4	chr11	68863839	68864039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10808.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	6.61939895513628	6.29313908844761	6.31259104886167	6.09978599915242	6.11917878917589	6.43221509987407	6.41857629106658	6.15185809694931	-0.073212323940922	0.763995841820216	0.907492132891533
Merged-chr7-115149147-2	chr7	115149069	115149269	+	945.625	f0_c57.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	197895.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	3.38544117948626	3.27117431758825	3.45140056971772	2.9214275100202	3.91995339194911	3.69748855854688	4.3856081175309	3.97290057231679	2.45708670038828	4.3999750662753e-06	0.000132369325968897
Merged-chr5-99379751-4	chr5	99379645	99379845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-126818.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.85021065378426	8.29305092109382	8.03210816269461	7.89524625241792	7.8464595557808	7.88685180788455	7.79098859358773	7.42370260883793	-0.359223853131824	0.0631582747950194	0.266655367556479
Merged-chr12-55430160-4	chr12	55430075	55430275	+	949.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	31350.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	4.74804505493599	5.31190744376157	4.82513620537895	4.7628086153746	4.60336904045017	5.16930136344947	4.7264613324917	4.53294808781487	-0.318733314828583	0.397526539477338	0.695931089908973
Merged-chr8-73354431-4	chr8	73354350	73354550	+	989.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010687)	promoter-TSS (NM_010687)	-910.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	3.97152108963659	4.10124106843604	4.27664759972543	4.40998390761122	4.26915044611822	4.09698013904256	4.5378601250723	4.78723262469776	0.554316803999307	0.19680936278106	0.497980648871105
Merged-chr15-73184064-4	chr15	73183969	73184169	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	878.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	5.29618069164855	4.8146271693481	4.96640900775688	4.98626384150457	5.31879461037298	5.41081111740139	5.53040641954933	5.13888638543413	0.620384383054981	0.0440419999895561	0.213969388932948
Merged-chr2-150675125-4	chr2	150675034	150675234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6894.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	5.30200526372839	5.23828830397802	5.1456679714259	5.23617458886333	5.48820682484018	5.25279230675017	5.15345550896825	5.2387275216792	0.124617046385946	0.668837559565316	0.863309251107075
Merged-chr11-87045643-4	chr11	87045541	87045741	+	886.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025638, intron 5 of 9)	intron (NM_025638, intron 5 of 9)	28496.0	NM_025638	66569.0	Mm.281887	NM_025638	ENSMUSG00000061666	Gdpd1	2610020H15Rik	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding	4.66400411408255	4.62385500928982	4.58564488381792	5.3444935302922	4.51689536856987	4.44503041806392	4.68007729258691	4.03516720104542	-0.911984710600728	0.0343829087937773	0.183305686228796
Merged-chr4-59550379-4	chr4	59550268	59550468	+	829.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1004.0	NM_144904	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	3.82891810248012	3.8895773218142	3.77796048739758	3.8997454674326	3.77319412240769	3.60054544916263	3.90968644397069	4.01433748688733	-0.0605251839851601	0.893139013549464	0.960067775059052
Merged-chr7-24208066-4	chr7	24207923	24208123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019940, intron 1 of 3)	intron (NM_019940, intron 1 of 3)	126.0	NM_019940	56707.0	Mm.448367	NM_019940	ENSMUSG00000087598	Zfp111	-	zinc finger protein 111	protein-coding	5.22745044695603	5.28507842940863	5.43807346822334	5.32361504690605	5.31021543105814	5.37128467442691	5.58931096858062	5.34867846585351	0.152465965146213	0.587746855255361	0.819334771057997
Merged-chr4-59407957-4	chr4	59407861	59408061	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 5 of 16)	L1MA5|LINE|L1	30672.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	5.3214043406625	6.11279454153886	6.28358278970978	5.59707027785104	5.67460474554149	5.71954086325194	5.81804364194788	5.28411197638616	-0.39388483522462	0.229920954478304	0.539096658041788
Merged-chr2-152805547-2	chr2	152805447	152805647	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	URR1A|DNA|hAT-Charlie	22942.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	2.72132672902795	2.97857859580692	2.92377969803524	2.69894211247859	2.71751653560608	3.03442789456351	2.97335923531833	3.25103240002949	0.743596734991235	0.237740937454124	0.547926505214579
Merged-chr15-30609312-4	chr15	30609220	30609420	+	916.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-429806.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	3.86622704748593	3.93936770954821	4.42560225902904	4.22010152649269	4.18890934763199	4.71476272040203	4.72830925006853	4.61424709698835	1.02088776777826	0.0170304134130155	0.114770668086066
Merged-chr12-32292183-4	chr12	32292066	32292266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83517.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	5.31890703039487	5.65472862671757	5.09301753837302	5.35592998660166	5.19118023477716	5.55066238460375	5.23303373848882	4.93971476930225	-0.239123816600068	0.45198082296714	0.7363762731575
Merged-chr16-30975385-4	chr16	30975267	30975467	+	876.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	106065.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	4.43757638134237	4.51042160667189	4.60595462617433	4.83712043334024	4.26670709998319	4.85263700912783	4.5449639694902	4.56309278634016	-0.128872898567881	0.737217849438381	0.8963640666944
Merged-chr7-107248847-3	chr7	107248737	107248937	+	695.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	39392.0	NM_029660	76572.0	Mm.128134	NM_029660	ENSMUSG00000073894	Rbmxl2	1700012H05Rik|Hnrnpg-t	RNA binding motif protein, X-linked-like 2	protein-coding	3.51393734131057	3.75069420065737	4.04234447558495	3.88663399163418	3.13573398974391	3.10068672904848	3.1987146079922	3.06392825047966	-2.62368861140046	1.8546194491771e-05	0.000476570244667785
Merged-chr8-80265128-4	chr8	80265039	80265239	+	950.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-207131.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	5.17006266680797	4.95983949434208	5.36475765516527	5.47852973328138	4.73666362812816	4.5537823697981	4.59652161489439	5.04156907555053	-1.02385694459951	0.00325619437726241	0.0340341644022262
Merged-chr4-116821118-4	chr4	116821016	116821216	+	783.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146256, exon 1 of 1)	exon (NM_146256, exon 1 of 1)	392.0	NM_146256	242642.0	Mm.279897	NM_146256	ENSMUSG00000043155	Hpdl	A830048M07Rik|BC034099|Gloxd1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding	3.9820709638897	3.81651632401481	3.44373169532672	3.80063271578099	3.56113447713152	4.01331691549841	3.96461646721518	3.68439832864373	0.109318979553505	0.823362160406022	0.932282824802193
Merged-chr1-52100657-4	chr1	52100563	52100763	+	964.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308266, intron 18 of 24)	intron (NM_001308266, intron 18 of 24)	-18775.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	4.97768903501061	4.55401704548854	4.63792590961305	4.80632034445101	5.26235117506731	4.58620505117239	5.41632628047777	4.63495563454662	0.557197877156955	0.148742245950186	0.430676659662706
Merged-chr3-142559757-3	chr3	142559655	142559855	+	922.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018734)	promoter-TSS (NM_018734)	-289.0	NM_001289492	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	4.85246672264876	4.1521516600081	4.20163119519305	3.94873629250765	4.28841931106676	4.23037796840848	4.3578883514497	4.04904455595999	-0.212862624680718	0.639113330521931	0.847460117673189
Merged-chr10-67247344-3	chr10	67247259	67247459	+	849.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 22 of 25)	B3|SINE|B2	37922.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	3.63939111708252	3.34476657892947	3.40833256701027	2.90990171568779	4.28861118203522	3.76218775547704	3.72518960343839	3.40655274676126	1.54809521232937	0.00791442237136452	0.0666991084503143
Merged-chr7-80387236-4	chr7	80387129	80387329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010194, exon 2 of 19)	exon (NM_010194, exon 2 of 19)	717.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	5.62171684541669	5.23513440771345	5.57097935976375	5.51154668715353	5.47671701923238	5.69138492027148	5.48936827545766	5.69244468546173	0.163060103792962	0.553617814170255	0.800299811020219
Merged-chr15-101859926-4	chr15	101859829	101860029	+	749.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001003667)	TTS (NM_001003667)	-9143.0	NM_008473	16678.0	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	3.71341503735764	3.42899164439194	3.89708681484477	3.54340353581867	3.44429741909541	3.61646493557237	3.42816920989857	3.71173998448816	-0.312940220429822	0.534065471550689	0.789066961676578
Merged-chr11-49204547-3	chr11	49204433	49204633	+	947.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024846, intron 1 of 4)	intron (NM_001024846, intron 1 of 4)	1033.0	NM_009562	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	3.36686071464447	3.88745272316997	3.43180720084012	3.68108951448404	3.81916892573011	3.83327191529899	3.79590042463495	3.55050838418964	0.421956733343037	0.399343213126172	0.697398862845002
Merged-chr4-109505072-4	chr4	109504977	109505177	+	884.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001199090)	TTS (NM_001199090)	26127.0	NM_001199090	67646.0	Mm.45820	NM_026291	ENSMUSG00000060491	4930522H14Rik	1700007J23Rik	RIKEN cDNA 4930522H14 gene	protein-coding	4.22389471655216	4.55439156666557	4.32438501292631	4.49045082641946	4.7092179035573	4.45365022209973	4.7105350678729	4.86252235683516	0.61482540638664	0.0940508065913413	0.335476295148992
Merged-chr7-30231882-4	chr7	30231798	30231998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027259)	promoter-TSS (NM_027259)	-176.0	NM_027259	69920.0	Mm.440028	NM_027259	ENSMUSG00000019738	Polr2i	2810002B19Rik	polymerase (RNA) II (DNA directed) polypeptide I	protein-coding	7.6585843910187	8.15481701477583	7.86662655863819	7.96708246277167	8.27759876998521	8.31711350380985	8.20062823443623	8.1217559872896	0.388141370902418	0.0260572055385436	0.15270426002591
Merged-chr2-125280839-3	chr2	125280739	125280939	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33324.0	NM_023595	110074.0	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	3.35681918924265	3.23232212465769	3.59853156533615	3.50792852123964	3.21224566577407	2.86829474813068	3.1141080925385	3.12300529986753	-1.31246283580417	0.0279538228787435	0.159977987101765
Merged-chr16-32798969-4	chr16	32798885	32799085	+	932.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1550.0	NM_001145874	224116.0	Mm.153301	NM_146071	ENSMUSG00000035638	Muc20	BC026367	mucin 20	protein-coding	4.76605277838713	5.1487766604137	5.05040183070156	4.06561154859602	4.89051919662343	5.09105921152448	5.22833873561455	4.72346030790708	0.355243253792929	0.394648120561103	0.693682147756976
Merged-chr3-95282474-4	chr3	95282367	95282567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199475)	promoter-TSS (NM_199475)	-391.0	NM_173347	229589.0	Mm.14155	NM_173347	ENSMUSG00000015711	Prune1	9230112O05Rik|C130058A12|DRES-17|HTCD37|PRUNEM1|Prune|Prune-M1	prune exopolyphosphatase	protein-coding	5.15946159640879	5.59636961557525	5.38093478470288	5.09527232442477	5.50830593215924	5.43487543410623	5.51551230718075	5.19072340578995	0.194357451504821	0.519888762509705	0.780386811756432
Merged-chr14-120910979-4	chr14	120910876	120911076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023579)	promoter-TSS (NM_023579)	-218.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	9.05046371856682	9.15832130811012	9.19823346009385	9.1508535963764	9.19996588405712	9.17325172653447	9.31874707647418	8.81983809913563	0.00139306586014485	0.993021941659826	0.997480504272198
Merged-chr17-24724450-4	chr17	24724333	24724533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026684)	promoter-TSS (NM_026684)	-45.0	NM_026684	68342.0	Mm.1129	NM_026684	ENSMUSG00000040048	Ndufb10	0610011B04Rik|22kDa|PDSW	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10	protein-coding	6.52755436523633	6.72017707900033	6.42491374151661	6.01691370394306	6.90286665390706	6.87504766829608	6.67940309811338	6.52403753757694	0.469282696639021	0.0576636185912523	0.252068780036244
Merged-chr4-141605479-1	chr4	141605379	141605579	+	1000.0	f1_c57bl6.idr	intron (NM_133754, intron 1 of 8)	intron (NM_133754, intron 1 of 8)	573.0	NM_133754	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	2.68035465741995	2.6060936317162	2.95595284194997	2.20848986081843	3.12669890615729	3.0715567533496	2.94404137039431	3.3763220568771	2.25401520562043	0.00535120277480404	0.0499859924288421
Merged-chr19-34519827-4	chr19	34519718	34519918	+	951.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	7656.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	4.69767782117075	4.94891151840251	4.27459759618643	4.54560005742759	4.34688100461578	4.67740692477397	4.25648910701517	4.5823107176046	-0.374115922138684	0.342796037558626	0.6516462545027
Merged-chr4-66796938-4	chr4	66796854	66797054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30597.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	7.31591865883647	7.22005843992678	7.26514359122947	7.528493376876	7.14296829528827	7.08939320212804	7.24986305559237	7.13741797984754	-0.260918543643442	0.162430337563443	0.45165270227579
Merged-chr4-122990134-2	chr4	122990034	122990234	+	555.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-5797.0	NM_001303121	16918.0	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	3.11501211015722	3.37706914628113	2.99727845650746	2.77274406063323	2.90188988560493	2.90538716404437	3.04606691077203	2.93255470814844	-0.556819676146778	0.37504606074246	0.678133504993841
Merged-chr13-46180891-4	chr13	46180798	46180998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92823.0	NM_001005422	380842.0	Mm.188108	NM_001005422	ENSMUSG00000063529	Stmnd1	Gm1574	stathmin domain containing 1	protein-coding	5.43004645334033	5.65244946191457	5.31755835137302	5.44887365932379	5.05679813741329	5.04020681592463	5.37645227606867	4.97664282482209	-0.63710928058133	0.0338974335345893	0.181676391360183
Merged-chr17-42939667-3	chr17	42939567	42939767	+	917.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63243.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	3.16831420627083	3.35939505543951	3.16864214121061	3.26445055967299	3.96736996054749	3.86510043348603	3.47324048707887	3.74120233472593	1.73084097752005	0.000879361008017486	0.0121420052744281
Merged-chr14-70767698-4	chr14	70767593	70767793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR67B|LTR|ERVL	-1065.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	5.70080982605736	5.56904308135465	5.32203667594964	5.85151519047488	5.7083140928496	6.01843966200515	5.92247416766396	5.67226657155065	0.312147182529009	0.262269355736329	0.574172499368134
Merged-chr17-5316735-4	chr17	5316627	5316827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 11 of 19)	intron (NM_001085355, intron 11 of 19)	102040.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	5.44232869775431	6.37647514481188	6.42037660061396	6.41573243078014	5.32503061642601	4.99796332688911	5.62045007636047	5.69859315586392	-1.28307467805953	0.000149454094242076	0.00284438314814351
Merged-chr9-99090673-4	chr9	99090595	99090795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 6 of 23)	RSINE1|SINE|B4	49516.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	6.80518179404936	6.67934148152141	6.67716064264412	6.69164095853935	6.75942321458375	6.72678006251488	6.46558989237099	6.80154429637093	-0.0211410790669351	0.91750304478769	0.969630686678215
Merged-chr10-8415734-3	chr10	8415636	8415836	+	866.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	103089.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	4.00348040819296	3.84739721030117	3.84890227228967	4.45462654539134	3.91235622146561	3.91364147502693	3.83380209275125	4.37784555196413	-0.143357845829121	0.76709392930899	0.908865084131511
Merged-chr10-8874179-4	chr10	8874081	8874281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	11889.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	7.36725835311619	7.53710874879311	7.26583365320477	7.36978095420558	7.3270944235913	7.19570269176446	7.08315263554527	7.13738775739665	-0.264176283052569	0.15079906350012	0.433720969002546
Merged-chr3-133526513-4	chr3	133526417	133526617	+	964.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040400, intron 1 of 10)	L1MCa|LINE|L1	17873.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	4.82799223232091	4.73989930106732	4.9319320226566	4.7136883097998	4.61872715804219	4.54046087069167	4.7696758184933	5.05390633206812	-0.0848780184036446	0.806882967799864	0.925549494223108
Merged-chr2-103638146-3	chr2	103638047	103638247	+	874.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	71837.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	4.17634672842002	3.88009310260342	4.33226863656712	4.27450152822597	3.55350363365605	3.79882588825899	3.53954850138355	3.99740533921269	-1.27553020385346	0.00761004581792668	0.0648169739468952
Merged-chr1-172588683-4	chr1	172588588	172588788	+	926.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029084, intron 1 of 4)	G-rich|Low_complexity|Low_complexity	1880.0	NM_029084	74748.0	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	4.84639343232112	4.85623671251696	4.58443536139276	5.11979867522374	4.59426319991016	4.43644025834173	4.52158585380015	4.49545899325184	-0.785023025918498	0.0303285404471593	0.168468486069014
Merged-chr5-125361213-4	chr5	125361113	125361313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-20119.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	5.81025343281699	5.87987784825228	5.85964090121756	5.84152404480162	6.02445497055808	6.32763776051189	5.78178817173851	5.90202315633231	0.277119960083355	0.271471925549628	0.583222139604812
Merged-chr13-23764808-2	chr13	23764719	23764919	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_030609)	TTS (NM_030609)	1151.0	NM_030609	80838.0	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding	3.02047494009947	2.79986654812413	2.69314165388082	2.47031431373589	2.80753919739913	3.13475228019439	2.88842690141264	3.23246655235035	1.19370059141076	0.0719212696793617	0.288118193072225
Merged-chr2-118703070-4	chr2	118703006	118703206	+	750.708313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081971, exon 1 of 1)	exon (NM_001081971, exon 1 of 1)	857.0	NM_001081971	383787.0	Mm.35758	NM_001081971	ENSMUSG00000078137	Ankrd63	Gm1337	ankyrin repeat domain 63	protein-coding	3.24280986203318	3.18808446730494	3.3618916353863	3.09819954922941	3.26438468490935	3.41921044606603	3.23148287231561	3.82850026504957	0.833407219985716	0.12905585183403	0.39973336201543
Merged-chr4-134245587-4	chr4	134245466	134245666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024215)	promoter-TSS (NM_024215)	25.0	NM_024215	68040.0	Mm.300404	NM_024215	ENSMUSG00000028840	Zfp593	3110024A21Rik|AV062409|E130106C14Rik|ZNF593	zinc finger protein 593	protein-coding	6.5756035020549	6.54685220913172	6.60798876584743	5.79551633661145	6.7551717362994	6.87286942425193	6.42781137781742	6.67802288659597	0.418831353117552	0.120167032210622	0.383765666983124
Merged-chr5-16470055-4	chr5	16469954	16470154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83441.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	8.51799694368519	8.29243795064843	8.87000061228789	8.96240499396531	8.44755564948255	8.40051428923919	8.68234603073169	8.50406883133095	-0.22768742512767	0.241072130198456	0.551620958478667
Merged-chr12-55019553-4	chr12	55019470	55019670	+	989.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33234.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	5.0682861395791	4.57626751622564	4.86009892410388	4.91704660448367	5.03573601366263	5.27226934022014	5.01198857345937	5.03316580225433	0.432361205178246	0.183213679551711	0.48006630245343
Merged-chr5-105586903-4	chr5	105586808	105587008	+	959.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	67437.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	4.54020179128565	4.04837886592696	4.9658952059875	4.88768244022008	4.44859653275796	4.58565711925889	4.71286783957138	4.65820304654995	-0.135682030629151	0.743414745190026	0.89894073126818
Merged-chr16-4894389-4	chr16	4894283	4894483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	8283.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	5.63359063762168	6.13272349339016	5.68723927966773	5.54232021853401	5.79696405823655	6.02980307135429	5.60615303897629	5.54736953490774	-0.0108736146348598	0.969989825233346	0.98916754925263
Merged-chr14-50936694-6	chr14	50936550	50936750	+	922.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2-int|LTR|ERVL-MaLR	-5801.0	NM_001310507	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	2.80951988027276	3.01065437946693	3.06685638711735	2.89072286144715	3.07609842973621	3.11645577683938	3.05531887194422	3.12218212321065	0.611949570401452	0.283926245098767	0.595969718026818
Merged-chr12-78901664-4	chr12	78901549	78901749	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013738, intron 1 of 8)	intron (NM_013738, intron 1 of 8)	5289.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	4.64372068944138	4.70924435003997	4.68420287636706	4.86564465996191	4.48170611123732	4.55622550203573	5.02923728933894	4.75699717314675	-0.0425802504042625	0.90556365627606	0.964916319169902
Merged-chr11-32238650-4	chr11	32238542	32238742	+	898.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284359, intron 9 of 13)	intron (NM_001284359, intron 9 of 13)	12137.0	NM_010822	268395.0	Mm.263161	NM_010822	ENSMUSG00000020287	Mpg	9830006D05|AI326268|APNG|Aag|Mid1	N-methylpurine-DNA glycosylase	protein-coding	3.84954774650391	3.90169924230146	3.90600535091857	4.06447401603652	4.41825256268181	4.13509274747597	4.37973124823749	4.23956404886053	0.909364840473946	0.0277719625797798	0.159165115749208
Merged-chr4-44911160-3	chr4	44911057	44911257	+	610.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138590, intron 6 of 8)	intron (NM_138590, intron 6 of 8)	-70237.0	NM_080289	76238.0	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	3.22597906520921	3.16552979410989	3.48828624029204	3.17264074760778	3.49256510608318	3.14866918659589	3.21436362932434	2.89705505899459	-0.189124761947835	0.750950196679118	0.90192697966077
Merged-chr15-19857449-3	chr15	19857362	19857562	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	672089.0	NR_155419	102639102.0	Mm.463245	NR_155419	ENSMUSG00000115803	Gm35496	-	predicted gene, 35496	ncRNA	4.05622522911828	3.87178663248072	4.05689541413899	2.49521728850889	7.2389454865187	7.30680519436021	7.21285772329688	6.86685906559945	10.2744646466538	8.00227317300529e-34	1.32463674925894e-30
Merged-chr11-60932944-4	chr11	60932816	60933016	+	736.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008928, intron 1 of 11)	intron (NM_008928, intron 1 of 11)	859.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	3.99612694685172	4.07775594153903	3.75500685921931	3.54172538382543	3.80557539013665	3.92795848485533	3.68621406444294	3.64214043385385	-0.23301744382348	0.629548530255871	0.842301337901528
Merged-chr16-52062087-4	chr16	52061998	52062198	+	737.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	30549.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	3.67395781198173	3.5448301869499	3.72822923447489	3.50780195695057	4.10677719555771	4.04367190064312	3.9500116839667	3.55883066946685	0.987581219507296	0.0358421973837871	0.188043325006003
Merged-chr17-33810440-4	chr17	33810351	33810551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357162)	promoter-TSS (NM_001357162)	-72.0	NM_001357162	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	7.25803602173524	7.6181056640036	7.28103495202268	7.3594864455158	7.55689800872236	7.39196725581209	7.21207676410926	7.37932157760224	0.00933854746241779	0.960958006009837	0.986031655491274
Merged-chr7-68070762-4	chr7	68070645	68070845	+	967.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	L1MD|LINE|L1	118488.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	5.19055260644	4.80336097059824	5.38891393490506	5.40976438740004	4.71855579807244	4.85297927712453	5.22486469614564	5.12527422811028	-0.450671050013056	0.192027711560454	0.491538219433335
Merged-chr13-47226077-4	chr13	47225997	47226197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 3 of 7)	MER54A|LTR|ERVL	32094.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	7.96201492733478	7.91909985999513	7.98333356683581	8.02015978608927	7.49138689976237	7.58306354353378	7.57090002491898	7.72208593039997	-0.500195682609183	0.00218281478634395	0.0250153878082718
Merged-chr17-87036667-2	chr17	87036567	87036767	+	681.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019936)	TTS (NM_019936)	11106.0	NM_019936	56724.0	Mm.109329	NM_019936	ENSMUSG00000024146	Cript	1200020A08Rik|AA589469	cysteine-rich PDZ-binding protein	protein-coding	3.58506283517696	3.40156721803597	3.68433335225101	3.27014088047833	3.43500612150392	3.5946641330102	3.40869157866568	3.53117135429797	0.0332027118214296	0.948234372747005	0.981388084353081
Merged-chr17-10093633-4	chr17	10093535	10093735	+	941.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	225726.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	4.65442269399565	4.53691086140079	4.56264432239902	5.31886679148337	5.00654583643795	4.87944685469558	5.60776885112479	5.24996321069758	0.72306907788667	0.0758551694903385	0.297563797693734
Merged-chr5-73180156-3	chr5	73180061	73180261	+	717.027771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028194, intron 3 of 62)	intron (NM_028194, intron 3 of 62)	76457.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	3.16599778909291	2.93981005392356	3.0256368798479	2.77545903962269	3.77602424950562	3.41259612025388	3.69135650337741	3.75044774578251	2.6630451357198	1.69554483285594e-06	5.65014914128525e-05
Merged-chr14-19777051-4	chr14	19776931	19777131	+	959.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008695, intron 4 of 20)	intron (NM_008695, intron 4 of 20)	25774.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	5.25444421986541	5.09916781521928	5.58201015228601	5.36681420222171	5.32062383728751	5.3005125369094	5.3748486425714	4.97561826282993	-0.147863788545306	0.627502669176595	0.841164852244315
Merged-chr13-110523219-1	chr13	110523119	110523319	+	612.0	f0_balb.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	128175.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	3.51865907656114	3.62839440498956	3.77987506329037	3.65324277037176	3.42994307079345	3.51283821418127	3.89578354808758	3.57371566055716	-0.11426345890882	0.816562486915194	0.929373690915054
Merged-chr5-98329377-4	chr5	98329245	98329445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024614)	promoter-TSS (NM_001024614)	41.0	NM_001024614	75784.0	Mm.443240	NM_001024614	ENSMUSG00000057816	1700007G11Rik	4930428O21Rik	RIKEN cDNA 1700007G11 gene	protein-coding	6.37229569205802	6.0999251403897	6.7681271522141	6.44337510238047	5.55362467571102	5.71578837926848	5.68308244272114	6.02771064233864	-1.07688234323703	6.35429839169574e-05	0.00138612505431355
Merged-chr6-108876203-4	chr6	108876100	108876300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47559.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	5.13742986378726	5.18870801948599	4.82803841393077	4.59354764860058	4.66538165883876	4.33878397830423	4.69528661026708	4.20586561746348	-0.956854248972625	0.0164698076415151	0.112139318740712
Merged-chr13-112673386-3	chr13	112673282	112673482	+	840.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 2 of 14)	intron (NM_178746, intron 2 of 14)	12616.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	3.49634104268646	3.31612731632147	3.3567761477088	3.28435898904061	4.53621324151419	3.68650358978289	4.10723210437289	4.51589743070214	2.60755278851415	2.81559683222169e-07	1.09874652917055e-05
Merged-chr7-35796260-4	chr7	35796151	35796351	+	868.49585	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177739, intron 2 of 6)	intron (NM_177739, intron 2 of 6)	-6341.0	NR_033567	78547.0	Mm.406883	NR_033567	ENSMUSG00000044997	E130304I02Rik	-	RIKEN cDNA E130304I02 gene	ncRNA	4.94181931007761	4.53544472475412	4.91225882901614	4.52326578858394	4.33364322902134	4.13708674579253	4.49629197821207	4.63457716126631	-0.711782963119821	0.0695599090524236	0.28213600583751
Merged-chr3-106560275-4	chr3	106560171	106560371	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025582, intron 3 of 6)	B1F|SINE|Alu	-12469.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	5.53506220027568	5.34606770573105	5.45723495072939	5.16083304231257	5.14774004067355	5.06766952125989	5.4025549411333	5.62988539379845	-0.073982315856008	0.810809337644342	0.926854276252049
Merged-chr1-140261358-4	chr1	140261265	140261465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081027, intron 1 of 27)	intron (NM_001081027, intron 1 of 27)	15108.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	5.15902693236038	5.39786778947785	5.35484047556322	5.01487053597873	4.41577932502294	4.99377088595128	4.9749641556466	4.4010304554094	-1.02837324577945	0.00508321202389272	0.0480906644421627
Merged-chr9-13525873-4	chr9	13525778	13525978	+	932.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94111.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	4.99745543224686	5.26518844572052	4.75314543001176	5.51146056581802	4.65597068428038	4.31559378561219	4.04534920570918	4.62883335766699	-1.52685346058801	0.000229663925082316	0.00407560421925558
Merged-chr1-166430091-4	chr1	166429998	166430198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20270.0	NM_175170	71592.0	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	8.00971240334583	8.17497057857666	8.22380734136239	8.23658597780728	7.97731455331733	8.14699550548738	8.1080508707826	7.94274033966971	-0.159262753245385	0.319670546794278	0.631524558708573
Merged-chr13-112990625-3	chr13	112990515	112990715	+	935.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081062, exon 3 of 3)	3' UTR (NM_001081062, exon 3 of 3)	2813.0	NM_001081062	218630.0	Mm.25457	NM_001081062	ENSMUSG00000042417	Ccno	C86987|Ccnu|E130318K11|UDG2|Ung2	cyclin O	protein-coding	4.0667812424142	4.05390677251057	4.1550459464426	4.03171464272605	3.67907019054933	3.99337080022007	4.13603816349585	3.70104999866179	-0.523828436486792	0.240009822816053	0.55044655168913
Merged-chr4-141742107-1	chr4	141742007	141742207	+	755.0	f0_balb.idr	Intergenic	Intergenic	-4568.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	3.10899737410276	3.11361408754274	2.94205365377188	3.48073335756095	2.55022782317707	2.54774292972041	2.5206894194862	2.60366791153167	-3.77068196164408	4.17704903503608e-05	0.000968147747524692
Merged-chr17-28894550-4	chr17	28894451	28894651	+	748.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK10C-int|LTR|ERVK	-10714.0	NR_045457	74179.0	Mm.248931	NR_045457	ENSMUSG00000085333	1700030A11Rik	-	RIKEN cDNA 1700030A11 gene	ncRNA	3.95721393529651	3.84411053708377	3.95780276627987	3.70440820948128	3.75495722214631	4.22418864207525	4.38854691031289	3.79817791195541	0.551964564247997	0.233816799936898	0.543501690545507
Merged-chr12-112760515-8	chr12	112760425	112760625	+	996.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178911)	promoter-TSS (NM_178911)	-130.0	NM_178911	104759.0	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	4.5870567246991	4.63396134943276	4.54531090916908	4.50969739985131	4.80158421834882	4.67783215215245	4.68519907473916	5.06511937326379	0.535988665037193	0.117678272896383	0.379416585754694
Merged-chr2-26122772-4	chr2	26122695	26122895	+	723.50415	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026495)	promoter-TSS (NM_026495)	16.0	NM_026495	67991.0	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	4.19410833056507	4.12761311532631	3.85971334264663	3.93762569037447	4.30049673426008	4.03496025543876	3.9482862048181	3.91103910967499	0.0986160676479539	0.820049528024424	0.931124064497998
Merged-chr17-25188476-6	chr17	25188370	25188570	+	967.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001197024)	promoter-TSS (NM_001197024)	70.0	NM_001197024	74154.0	Mm.267353	NM_028789	ENSMUSG00000015127	Unkl	1300004G08Rik	unkempt family like zinc finger	protein-coding	4.42786720061609	4.65550320280239	4.50985962439796	4.37602896199899	4.2571937726708	4.55831314034684	4.18188943351221	4.33904792102573	-0.364344845528452	0.340310855673161	0.649427233865786
Merged-chr2-92065476-4	chr2	92065403	92065603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41333.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	6.71297461219889	7.18468786915171	6.58842559495552	6.27904023180796	6.93938670970818	6.99108307312461	6.75224034508252	6.72423204418989	0.185604677889131	0.466493868363153	0.746420287776482
Merged-chr11-55154690-4	chr11	55154559	55154759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2953.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	4.88534317325458	4.69900058582017	4.98716239770235	4.39735987948082	4.67755518360343	5.15826392012378	4.82724096914981	4.88284800644316	0.305151313243544	0.402430702480088	0.699908650354484
Merged-chr2-128804355-3	chr2	128804271	128804471	+	849.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13932.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	3.43746125447875	3.44320931502827	3.43795025935213	3.35099839325437	3.02984387764145	2.94211956160353	3.36911041037819	3.84775011638527	-0.230797607337912	0.711358200422472	0.884405406929924
Merged-chr4-115828972-2	chr4	115828888	115829088	+	860.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175308, intron 1 of 3)	intron (NM_175308, intron 1 of 3)	896.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	2.79217636425717	2.69947397769908	2.91047932537482	2.7702021489818	2.5588547942879	2.83608694154531	2.51310234746832	2.90882016485336	-0.392969155865362	0.555395101065764	0.801534192306725
Merged-chr4-132019144-4	chr4	132019050	132019250	+	824.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	29928.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	3.69345707774428	3.55339542642762	3.47243410789046	3.94860086541523	3.99268692874681	3.3913460088545	3.19823677529344	3.88028433747087	-0.0651086496744639	0.911188715110691	0.966911184949593
Merged-chr17-26716345-4	chr17	26716263	26716463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029870, intron 1 of 8)	CpG	713.0	NM_029870	77128.0	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	8.27373813820559	7.97226328773424	8.00383586337118	8.24372869330065	8.02245244682322	8.20176204891199	8.32664683421843	7.99850780355151	0.0102325092642048	0.953121359412204	0.983320469096829
Merged-chr8-75096544-4	chr8	75096403	75096603	+	699.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010442, intron 2 of 4)	PB1D10|SINE|Alu	2885.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	3.45614788645055	3.53832701773199	3.82313974285282	3.57826031973448	3.63508312529879	3.57203400321699	3.44425387697236	3.90841487789497	0.149858130141681	0.761731777499766	0.90664336139973
Merged-chr6-39507623-4	chr6	39507511	39507711	+	919.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172477, intron 3 of 18)	intron (NM_172477, intron 3 of 18)	50223.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	5.05095259298428	4.69487775563286	5.26050850566921	5.65454587791574	4.58038557649036	4.41144034522191	4.8911922360986	4.94723719174571	-0.991634380953199	0.0118326712210033	0.0889938403254221
Merged-chr8-126422462-4	chr8	126422376	126422576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174987)	promoter-TSS (NM_174987)	-25.0	NM_174987	67892.0	Mm.31946	NM_174987	ENSMUSG00000051671	Coa6	1810063B05Rik|AI447995	cytochrome c oxidase assembly factor 6	protein-coding	7.72823974954257	7.99824369943811	7.46712371212205	7.67420641663424	7.9916270448165	8.06759008064977	7.73980929115572	7.92718807372425	0.266854265585999	0.153094890694927	0.437555330104179
Merged-chr17-64615640-4	chr17	64615547	64615747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	13998.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	5.96606897511686	5.90880119536732	5.8051619519751	6.27608614148051	6.25164153451641	5.82575012820464	5.37622361320576	5.8960299778207	-0.199963447154687	0.502383076947262	0.76965261578213
Merged-chr15-100599529-4	chr15	100599432	100599632	+	949.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304965, intron 1 of 10)	CpG	452.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	4.60010828210754	4.0720023351263	3.99684179472991	4.04046516099546	4.32951160083597	4.06535123864528	4.35562959901135	4.59772997223173	0.385442218772975	0.368691114878961	0.673140739392848
Merged-chr6-135250801-3	chr6	135250691	135250891	+	832.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080553, intron 1 of 5)	(A)n|Simple_repeat|Simple_repeat	-2907.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	3.53119264368253	3.29125767482024	4.21757371961969	3.98415993597077	3.0062409888429	3.13325807626632	3.0085413850887	3.0913173910469	-2.90170004657188	1.72170734397162e-05	0.000447423903017729
Merged-chr11-119300119-4	chr11	119300010	119300210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138669)	promoter-TSS (NM_138669)	-67.0	NM_138669	192170.0	Mm.197555	NM_138669	ENSMUSG00000025580	Eif4a3	2400003O03Rik|Ddx48|eIF4A-III|mKIAA0111	eukaryotic translation initiation factor 4A3	protein-coding	7.26764460528799	7.18506524021162	6.7472530326172	6.48544751360621	7.46376849782599	7.59263796497572	7.19028146158962	7.19976531242422	0.578083967279888	0.0174232100266302	0.116633750257266
Merged-chr3-9709071-3	chr3	9708964	9709164	+	848.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	-98979.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	3.96054829623239	3.54132458855895	3.56669143930037	3.84953782467271	3.53669566780194	3.84826507896397	3.55336902060493	3.67522909702826	-0.281819657749399	0.56412936414991	0.806599371831898
Merged-chr11-70433385-4	chr11	70433294	70433494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145429, intron 1 of 14)	intron (NM_145429, intron 1 of 14)	814.0	NM_001271358	216869.0	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872|Arr3	arrestin, beta 2	protein-coding	6.66605195152378	7.0302770500633	6.61991206110362	6.69369207125134	6.92100180620543	6.71428875239094	6.85832036099548	6.63115500637908	0.0407421223440974	0.848714964151503	0.942826769568621
Merged-chr3-130065694-3	chr3	130065601	130065801	+	951.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-4794.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	4.07813984870646	4.18975258613552	4.41769229029505	4.3072290436409	3.83647001896216	4.1010217714473	4.10852431988089	4.07631736665697	-0.598705180817929	0.15042970844255	0.433044538821344
Merged-chr16-90995474-6	chr16	90995373	90995573	+	878.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045515, intron 2 of 32)	intron (NM_001045515, intron 2 of 32)	15622.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	3.82096929318203	3.84362918813087	3.87092289077832	3.83852316688578	3.79273140120541	3.71919196289524	3.94670098755081	3.76802439796822	-0.0970316216587798	0.825812776014125	0.933172369962049
Merged-chr9-46173117-3	chr9	46173033	46173233	+	761.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 4 of 24)	B4A|SINE|B4	-55497.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	3.34221159046709	3.36046892644199	3.22775896375191	3.4501842200958	3.28068552328765	3.33844651478073	3.15591318256816	3.28479717022726	-0.323645291095796	0.541166373586788	0.793091916768597
Merged-chr2-102037294-5	chr2	102037208	102037408	+	974.8800050000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178886, intron 4 of 5)	MIRb|SINE|MIR	149152.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	4.96614762071306	5.35746145509618	5.03463756041267	5.00744404674813	4.864835909751	5.10554706053736	4.75802880700153	4.65090305303529	-0.485306039368544	0.146550503981205	0.426967777286073
Merged-chr11-110716558-2	chr11	110716458	110716658	+	760.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	237218.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	3.37811474411513	3.36005189683813	3.93863005253993	3.37919968239578	3.3334088118174	3.36957182482164	3.36584052711799	3.31694126906426	-0.634786108819447	0.243654476609822	0.554676879477102
Merged-chr13-91132194-2	chr13	91132094	91132294	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 3 of 7)	MTB_Mm|LTR|ERVL-MaLR	91793.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	2.61787464671084	2.52337982878694	2.5585206449451	2.55302622697196	2.30151466843256	2.38785663474932	2.35431849941617	2.42896570110649	-1.16719922381458	0.105953796762922	0.358568953081721
Merged-chr15-83148513-4	chr15	83148401	83148601	+	861.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 1 of 7)	PB1|SINE|Alu	877.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	3.98741183733749	4.23292507284133	4.22621037250317	3.98764301098596	4.34978066920583	4.11104364894489	4.11826023994925	4.22356643576473	0.267968644851186	0.508962785705374	0.773835474540333
Merged-chr4-118106904-4	chr4	118106776	118106976	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285520, intron 2 of 11)	intron (NM_001285520, intron 2 of 11)	28070.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	5.95923829523759	6.05229663963112	5.70953405679972	6.10315416999513	4.7833922181333	4.99816134423223	4.6426038116873	4.89473305280764	-2.07755204694323	1.04683542620218e-11	9.40816904061177e-10
Merged-chr5-28123265-4	chr5	28123158	28123358	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42438.0	NM_010134	13799.0	Mm.4298	NM_010134	ENSMUSG00000039095	En2	BB131122|En-2	engrailed 2	protein-coding	5.71152012695425	5.54458543693509	5.25256553430702	5.66965798869589	5.0724723012719	5.39643934160327	5.48892276332894	5.18210351782563	-0.491209392276218	0.0993995583426792	0.345736960675995
Merged-chr6-30391004-4	chr6	30390889	30391089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311086)	promoter-TSS (NM_001311086)	31.0	NM_172735	232679.0	Mm.29780	NM_172735	ENSMUSG00000039130	Zc3hc1	1110054L24Rik|AU018540|AU019789|HSPC216|Nipa	zinc finger, C3HC type 1	protein-coding	5.79702291727676	5.65967269249359	5.47658569642402	5.38308570182989	5.46566658267133	5.50372833076881	5.3320740329403	5.44428999059067	-0.238314664956228	0.396230038515133	0.695104735895268
Merged-chr8-115707950-4	chr8	115707866	115708066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1072.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	7.37192898661361	7.49272713754038	6.93040436188449	7.26254724773073	7.54583938332059	7.49901787213411	7.59035696971351	7.63076214619415	0.379085720723974	0.0481696753815644	0.226483667168838
Merged-chr11-116021473-5	chr11	116021367	116021567	+	865.6333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008211)	TTS (NM_008211)	3037.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	4.18093343933227	4.49502174338978	4.18156804200266	3.91735429106266	3.88064187610461	4.40137258454733	4.25343673020075	4.50983832889376	0.178382810055631	0.686515177075727	0.871787672169905
Merged-chr2-76648183-4	chr2	76648089	76648289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011871)	promoter-TSS (NM_011871)	-195.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	9.51515436171552	9.33726142148886	9.68011337354748	9.47995466975861	9.44366807854499	9.62805102122962	9.64153422397714	9.27524653575107	-0.00335305915138684	0.982982761520334	0.99391627339985
Merged-chr5-5420221-6	chr5	5420084	5420284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-39933.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	7.49856883398275	7.72369226477604	8.22506570369227	7.70504355676875	7.35915866731604	7.94524798587589	7.86931110192841	7.4253634061165	-0.187422634705118	0.417409548730219	0.711226941855418
Merged-chr16-25038199-2	chr16	25038099	25038299	+	804.083313	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B2|LTR|ERVK	-21440.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	3.100022622987	3.08117158911558	3.04244002623461	2.60570158197503	3.08411127835905	3.09245681591513	2.84234913489048	3.04081159795489	0.22499917987718	0.722971395845255	0.889323714204725
Merged-chr7-44998665-4	chr7	44998489	44998689	+	990.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045611, intron 1 of 7)	intron (NR_045611, intron 1 of 7)	941.0	NM_016849	54131.0	Mm.3960	NM_016849	ENSMUSG00000003184	Irf3	C920001K05Rik|IRF-3	interferon regulatory factor 3	protein-coding	4.42212879840198	4.81431851780426	4.55180708920539	4.194570302966	4.97796607831795	4.87675471437041	4.35747678943494	4.22597132926198	0.322266876802884	0.447310663719701	0.73286053016238
Merged-chr12-4237632-2	chr12	4237532	4237732	+	763.916626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001204912, exon 2 of 2)	3' UTR (NM_001204912, exon 2 of 2)	3605.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	3.31573106801536	3.51354774247319	3.25670961084337	3.19773849775026	3.52844909673066	3.36920355078577	3.05187757137838	3.52767979772799	0.228490328548224	0.678004211904396	0.867963917899731
Merged-chr15-59737397-4	chr15	59737302	59737502	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57557.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	5.53837420900117	6.4403215810021	5.45110441965704	5.07457324386339	5.97481150868263	5.77209177904618	5.19300616599378	5.79188634713966	-0.0298732217477818	0.938680683794231	0.977759950372676
Merged-chr8-11497546-4	chr8	11497449	11497649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026995)	promoter-TSS (NM_026995)	-19.0	NM_026995	69225.0	Mm.64911	NM_026995	ENSMUSG00000031505	Naxd	0710008K08Rik|2810407E01Rik|Carkd	NAD(P)HX dehydratase	protein-coding	7.84984458626458	7.71811862664627	7.54820528936786	7.97963465697818	7.92551243436604	7.84394077148832	8.36428555137794	7.77673632766259	0.270569845510037	0.181312064489551	0.477861718750759
Merged-chr13-45094016-3	chr13	45093892	45094092	+	744.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91896.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	2.71948761053597	2.6505992390011	2.71974037888484	2.2943848829344	4.07022350630635	3.36304071540898	3.55153440028971	3.87037669831059	6.76502936231954	6.64953197473765e-14	8.99823263174623e-12
Merged-chr15-94545018-4	chr15	94544930	94545130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029926, intron 1 of 11)	RLTR42-int|LTR|ERVK	1370.0	NM_029926	266632.0	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	5.85022156107508	5.78143461388924	5.44193755866901	5.28276994536681	6.03264413077768	5.75992020253881	5.44441863180298	5.43814652744299	0.176678527382034	0.569772337854222	0.809561615168898
Merged-chr1-55237153-4	chr1	55237070	55237270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175439)	promoter-TSS (NM_175439)	-7.0	NM_175439	212679.0	Mm.19223	NM_175439	ENSMUSG00000046994	Mars2	C730026E21Rik|MetRS	methionine-tRNA synthetase 2 (mitochondrial)	protein-coding	8.17816645026557	8.33321973082063	7.79862120075287	8.32605948512604	8.35808463919133	8.16716250816116	8.53300297363534	8.07943610257775	0.147517342859788	0.445130792650955	0.731224663976513
Merged-chr13-20184513-2	chr13	20184410	20184610	+	847.25	f0_balb.idr|f0_c57.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	94003.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.96382905399579	4.07981693494792	3.8098742678833	4.06937959441994	4.13574805672625	4.03634409525259	3.55937649522872	4.0554870097333	-0.0538212215240453	0.906677496320083	0.965374636270914
Merged-chr13-69559323-2	chr13	69559224	69559424	+	856.125	f0_balb.idr|f1_balb.idr	Intergenic	ERVL-E-int|LTR|ERVL	-25460.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	3.72661217054902	3.47060217911989	4.10859532183493	4.61634433306099	2.75600664825187	2.98953274831937	3.02842681767165	2.95412664500943	-6.21537791964052	2.02376833858746e-08	1.01586605481182e-06
Merged-chr11-76459440-2	chr11	76459342	76459542	+	884.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 8 of 21)	intron (NM_001346670, intron 8 of 21)	9023.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	3.17920326111566	3.06917071494829	3.17961854284001	2.91519278897511	3.11794524445648	3.29224396846034	3.3808765375207	3.17793898465433	0.639576067686655	0.2491405808363	0.560302603581264
Merged-chr3-94443301-4	chr3	94443163	94443363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030116)	promoter-TSS (NM_030116)	-73.0	NM_030116	78523.0	Mm.218515	NM_030116	ENSMUSG00000028140	Mrpl9	8030480E20Rik|AA409733|C330013D18Rik|L9mt	mitochondrial ribosomal protein L9	protein-coding	6.71546842831106	6.47712235233462	6.04835925658541	6.63443349839884	6.45053515887142	6.53976537418362	6.86377047465087	6.32056372715256	0.0836819084068537	0.739262666676914	0.897216910233871
Merged-chr16-87689439-4	chr16	87689322	87689522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9532.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	5.45489417992271	5.32559305079275	5.34051924623747	5.64259865298448	5.44908312452635	5.25140101678852	5.37263934241712	5.36662699648668	-0.169226519541345	0.552699134029027	0.799868677982226
Merged-chr14-62277950-2	chr14	62277850	62278050	+	680.0	f0_balb.idr|f0_c57.idr	intron (NM_173419, intron 1 of 1)	intron (NM_173419, intron 1 of 1)	15029.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	3.70903969757052	3.85185313056775	4.22336033007357	3.80630988513467	3.98659336798079	3.94012123916437	3.85531969655286	3.81744341640614	-0.00183076277024123	0.996764429934981	0.998697518182638
Merged-chr3-28805877-2	chr3	28805777	28805977	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_154889, intron 1 of 3)	intron (NR_154889, intron 1 of 3)	369.0	NM_026517	68028.0	Mm.21724	NM_026517	ENSMUSG00000039221	Rpl22l1	3110001N18Rik|AU041196	ribosomal protein L22 like 1	protein-coding	6.06130749404809	6.61166868894064	6.94970381478136	6.17801579865141	6.48882052572764	6.58507381774235	6.52580310311877	6.43897129074159	0.0282701172470427	0.915174424658039	0.968483970989646
Merged-chr3-96575710-4	chr3	96575620	96575820	+	842.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8919.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	3.98736324566267	3.82993420947224	3.89095919856594	4.22479978404008	3.77330650693635	3.90548534198182	3.82420919401009	3.98555426539997	-0.382437453551181	0.393291424476248	0.69244311622625
Merged-chr6-86772847-4	chr6	86772752	86772952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013471, intron 1 of 12)	intron (NM_013471, intron 1 of 12)	2262.0	NM_001331120	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	6.00508206962364	6.41111837707281	5.78313314911401	6.32082920474776	6.37671534496986	6.50058508707423	6.20248404653427	5.93180206096646	0.158742586323509	0.553818188690594	0.80043514274805
Merged-chr11-118229001-3	chr11	118228908	118229108	+	765.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	PB1D10|SINE|Alu	-16266.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	2.93569892103616	2.98845550218036	3.15574027949719	2.93510263748177	2.91493825268774	2.69671099696627	2.86479177307276	2.93461101910323	-0.645135214303001	0.295446091779641	0.607396411491466
Merged-chr7-132576367-4	chr7	132576270	132576470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016978)	promoter-TSS (NM_016978)	28.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	7.9226094972602	8.50191096482683	8.27065090246991	7.95111400220983	8.36246530592155	8.65359792290913	8.53839664792042	8.10064644950107	0.313613311393179	0.12536050930561	0.392963659202335
Merged-chr11-115187903-4	chr11	115187812	115188012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025400)	promoter-TSS (NM_025400)	425.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	6.42125870981907	6.76560570808739	6.44050639638804	6.34692281380801	6.83118970042802	6.76919886924771	6.95080622571458	6.5227080294238	0.404411601740094	0.0701052187075736	0.283395011494002
Merged-chr3-50406951-4	chr3	50406848	50407048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011990, intron 6 of 11)	intron (NM_011990, intron 6 of 11)	36665.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	6.68547532413014	6.34065942142918	7.10296798687592	7.01909948584634	5.83328253497459	5.84035689330618	6.31555124317306	6.14419875870308	-1.15473586293395	1.85659984782188e-05	0.000476659713434086
Merged-chr4-102608272-4	chr4	102608160	102608360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177980)	TTS (NM_001177980)	18417.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	5.75426767192598	5.55690358417164	5.8178330391903	5.81617442474636	5.21038553822756	4.48645017719053	5.0710319275245	4.72261991830556	-1.48936068191186	1.33547738122683e-05	0.000357898887493768
Merged-chr1-93342857-4	chr1	93342770	93342970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023200)	promoter-TSS (NM_023200)	-82.0	NM_080850	269224.0	Mm.379454	NM_080850	ENSMUSG00000026274	Pask	mKIAA0135	PAS domain containing serine/threonine kinase	protein-coding	7.76169890177924	7.90144876595761	7.92053797634123	7.89161158240103	7.85949482350969	7.9484028759144	7.92388401733105	7.69210600653267	-0.0165652816472365	0.919317069633383	0.970285021467879
Merged-chr8-119574571-4	chr8	119574487	119574687	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026648)	promoter-TSS (NM_026648)	613.0	NM_175185	72552.0	Mm.36756	NM_175185	ENSMUSG00000034189	Hsdl1	2700067E09Rik	hydroxysteroid dehydrogenase like 1	protein-coding	4.16211473740245	3.66956221087263	4.11659775744403	4.52926741247465	3.96994698447189	4.3337842185918	4.05138279210449	4.16017426118623	-0.0983482435202263	0.834991478874958	0.937161709816312
Merged-chr6-125162141-4	chr6	125162055	125162255	+	910.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302779)	TTS (NM_001302779)	3618.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	4.03173240618567	4.23616745639929	4.33530442206499	4.22198333880401	4.63626490898907	4.55268541462471	4.59533663377908	4.61443823347061	0.900073742894762	0.0142943162023001	0.101392844152805
Merged-chr5-112972481-4	chr5	112972383	112972583	+	994.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 3 of 20)	intron (NM_001285806, intron 3 of 20)	43055.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	5.52433460183245	5.00212247909547	5.27227892572558	5.84014731007511	5.21830019964047	5.35146360641057	5.11632809791876	5.23716113091376	-0.421559198298785	0.203842090780478	0.506874277018817
Merged-chr6-87923837-4	chr6	87923740	87923940	+	927.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173737, intron 4 of 6)	intron (NM_173737, intron 4 of 6)	9864.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	4.79826786243014	4.48451144009185	4.86885251105064	5.01235393471659	4.48334645001874	4.40522501566157	4.87840476400718	4.83118100940763	-0.32028521362594	0.390433593508002	0.690570939884669
Merged-chr19-5050411-3	chr19	5050386	5050586	+	828.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145495)	promoter-TSS (NM_145495)	-322.0	NM_145495	225870.0	Mm.271922	NM_145495	ENSMUSG00000024883	Rin1	-	Ras and Rab interactor 1	protein-coding	3.43097278187715	3.42705494063825	3.37919525871569	3.23824516290161	3.26318446422341	2.8896582884788	3.1353711998512	3.47955438532652	-0.571583606287514	0.327531871648204	0.639011622936083
Merged-chr6-54737872-3	chr6	54737779	54737979	+	738.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56255.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	3.82643626070296	4.0462007504378	3.67187470107166	3.78258940428712	3.69829486369741	3.78969285137504	3.65767121484042	3.61386416565067	-0.443107499569581	0.339831204081958	0.648946231981688
Merged-chr11-95047100-4	chr11	95046940	95047140	+	827.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001306162, exon 25 of 26)	exon (NM_001306162, exon 25 of 26)	-5669.0	NM_133667	18604.0	Mm.29768	NM_133667	ENSMUSG00000038967	Pdk2	-	pyruvate dehydrogenase kinase, isoenzyme 2	protein-coding	3.11896439052541	3.06085160564133	3.17718766288231	2.69905469913949	3.37220812359469	3.03867503696112	2.98538791840231	3.230640370337	0.607453893614071	0.322098649207632	0.633560664104514
Merged-chr2-167260607-4	chr2	167260506	167260706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20069.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	6.58019145206388	6.18771307558703	7.42746546606006	7.3450179123481	6.23564099491695	5.8254591029546	6.41381276863147	6.35083815728692	-1.1014808812928	0.000612788405943072	0.00908701373887956
Merged-chr7-141480995-4	chr7	141480891	141481091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252588, intron 1 of 7)	intron (NM_001252588, intron 1 of 7)	4611.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	6.01914177184465	5.69524220698706	6.26003624417467	5.9701587501885	5.62598770691843	5.41073373451267	5.92710878410445	5.76956563885549	-0.485203681251922	0.0783510345506934	0.302996212554808
Merged-chr16-85172581-5	chr16	85172448	85172648	+	938.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	1159.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	4.63869454236867	4.60633787353386	4.59981009162776	4.72021103389006	4.83975748654487	4.55784726368617	4.65596526549753	4.47024766633206	0.00305124373998417	0.993073344842806	0.997501765555595
Merged-chr7-73619221-1	chr7	73619121	73619321	+	794.0	f0_balb.idr	Intergenic	Intergenic	-60826.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	4.61490848023956	4.27457795133944	4.50819090185936	3.91430780947059	4.18447284165812	4.38930100520332	4.14873031287702	4.21206716680564	-0.256163097191665	0.552691177528627	0.799868677982226
Merged-chr5-106709773-4	chr5	106709669	106709869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12939.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	5.10706486824063	5.05650930207075	5.29929513487926	5.30582175090069	5.30576348339758	5.4423864857306	5.18166711406428	5.29562050326061	0.187195358624978	0.522432633759128	0.781971587334536
Merged-chr1-180222240-3	chr1	180222119	180222319	+	973.2666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	23731.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	3.67535454361093	3.95974569840003	4.04768366869061	3.37291884852102	4.49159430936633	4.17369529146375	3.88439201569046	3.94929917831907	1.00750705233763	0.0418427080848652	0.207235651972541
Merged-chr1-85608574-2	chr1	85608477	85608677	+	958.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013817, intron 1 of 16)	intron (NM_001013817, intron 1 of 16)	-4686.0	NM_175397	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	3.08961672575479	3.01018335371091	2.98193435096335	2.73617326310463	2.66473364123998	2.69506488924814	2.65627924721827	2.86226862437957	-1.11433871221919	0.0908759104688186	0.329396214777755
Merged-chr12-111678061-4	chr12	111677964	111678164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099792)	promoter-TSS (NM_001099792)	-41.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	6.60943107206647	6.58494662438017	6.39314592196285	6.55579098657618	6.69436329167303	6.37429756426795	6.74802882983716	6.37020670555917	0.0380466300536928	0.862590428377717	0.948225401948674
Merged-chr12-70477413-2	chr12	70477313	70477513	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	AT_rich|Low_complexity|Low_complexity	24259.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	4.91827772311479	4.7351304883916	4.67740158371362	4.94333174669364	5.46111870154122	5.12982935191924	5.09724524185763	5.14991511317613	0.757924781940166	0.0181664855525711	0.11999557119028
Merged-chr12-69516710-4	chr12	69516614	69516814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41164.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	7.38705795983366	7.28355451497575	7.22991089988803	7.48439399817844	7.47798182199578	7.48344667177795	7.46499807973257	7.36321064656523	0.120885052300376	0.494491645456271	0.76514468885311
Merged-chr5-137072776-3	chr5	137072648	137072848	+	970.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008871)	promoter-TSS (NM_008871)	-476.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	3.08419143149602	3.05398852124405	3.48276057144276	3.54093734692634	3.26574823174477	3.25971505583471	3.25832863527299	3.3251361843825	-0.155154794078652	0.785471779463022	0.916505297339399
Merged-chr9-78587567-4	chr9	78587448	78587648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172773, intron 1 of 10)	intron (NM_172773, intron 1 of 10)	497.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	5.35135801560726	4.91195920600168	5.01063699110781	4.95150543011137	5.20927104002697	4.82586418157472	5.3520190073718	5.37539539261211	0.287418465813815	0.376489341234033	0.679190359379999
Merged-chr2-84524206-4	chr2	84524094	84524294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17321.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	7.22617597743402	7.17573119091651	7.20525465519382	7.27938768249336	7.37449104233334	7.25297899587233	7.37426212923043	7.22237626967757	0.115654638378753	0.512403119493682	0.775817701566463
Merged-chr8-22699617-4	chr8	22699511	22699711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159774, intron 2 of 21)	intron (NM_001159774, intron 2 of 21)	6972.0	NM_010546	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	5.47113737431071	6.12904786124744	6.14014382188878	5.92233864935216	5.82102401143752	5.87769578517412	5.72357989866478	5.67078546081873	-0.270265889273765	0.322753415225262	0.634236711233839
Merged-chr12-113146256-4	chr12	113146162	113146362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347443)	TTS (NM_001347443)	5657.0	NM_001347443	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	5.35454587049333	5.52418789069408	5.19822295136101	5.12286388030355	5.48697010924821	5.49989823667903	5.26873371779706	5.49147611062371	0.254453299581893	0.379908974141989	0.682384699466353
Merged-chr13-95842140-3	chr13	95842010	95842210	+	920.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	49812.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	4.86966724899636	4.69239476361421	4.71632561279186	4.55415807423287	4.13302641364796	3.85439940602221	3.78314077191297	4.03606184381431	-1.83292705459595	2.40318779017154e-05	0.00059830886224771
Merged-chr6-136660045-4	chr6	136659961	136660161	+	947.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	1832.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	4.38626494523007	4.20457589482348	4.13766972257747	4.20668401411258	4.78547887709473	4.84242649457608	4.41142322195687	4.95902486400251	1.18774111462341	0.00142799136676396	0.0179446491321847
Merged-chr13-37312740-4	chr13	37312643	37312843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32602.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.35152809425393	5.38235294263254	5.52160367646484	5.40320759756514	5.39282713220907	5.52684706823207	5.54511599288887	5.28716924021424	0.0436754005167065	0.873810657498995	0.952718075588848
Merged-chr8-123212046-4	chr8	123211930	123212130	+	870.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177279)	promoter-TSS (NM_177279)	758.0	NM_145606	234852.0	Mm.41596	NM_145606	ENSMUSG00000000743	Chmp1a	2900018H07Rik|Pcoln3	charged multivesicular body protein 1A	protein-coding	3.68409507885117	3.92380023547073	3.68455676062766	3.93606186912116	3.99370873620503	4.07705050588586	4.1172418825011	4.17500698951683	0.714855023310699	0.101645956784459	0.349885064507838
Merged-chr6-83502850-4	chr6	83502768	83502968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149734, intron 1 of 6)	intron (NR_149734, intron 1 of 6)	4101.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	5.82089178541044	5.80315666941551	5.89508759302953	6.10755307782636	5.76499591858914	6.26696651264453	6.13917155098965	6.35991251956338	0.337172042896426	0.203577043767844	0.506516023432304
Merged-chr4-40143369-4	chr4	40143269	40143469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007386, exon 1 of 21)	5' UTR (NM_007386, exon 1 of 21)	104.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	8.79252410357882	8.94839322058465	8.86968301780874	8.91426618907627	8.95056656344621	8.99206363504719	9.10596648509005	8.75088717037351	0.0896309473188658	0.549888257781682	0.798182929229814
Merged-chr3-108186559-4	chr3	108186496	108186696	+	902.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001287093, exon 1 of 3)	5' UTR (NM_001287093, exon 1 of 3)	307.0	NM_146137	229715.0	Mm.275752	NM_146137	ENSMUSG00000050947	Amigo1	Amigo|ali2	adhesion molecule with Ig like domain 1	protein-coding	4.16879953810417	4.21428324389343	4.06524776029585	4.52358344050401	4.46778426479495	4.60971944714392	4.41927344926189	4.43684347358084	0.480394059613288	0.228603928946235	0.53744877323504
Merged-chr18-60804968-4	chr18	60804878	60805078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042605, intron 1 of 8)	intron (NM_001042605, intron 1 of 8)	1129.0	NM_010545	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	7.00578957358507	7.26233200770847	6.84722087295682	6.43360225494097	7.34757227043921	7.24473233023703	7.10158980817701	6.92474560590404	0.353454807116107	0.145198580151779	0.424613382770069
Merged-chr10-68759403-4	chr10	68759288	68759488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 4 of 5)	ORR1E|LTR|ERVL-MaLR	35642.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	5.53548484718663	5.56544723592539	5.56491927171694	5.65392990021191	5.92836768772984	6.24120038683756	5.89908512658569	5.31373216603524	0.494019633598461	0.0918535770460065	0.331459861118261
Merged-chr9-118747960-3	chr9	118747856	118748056	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	36264.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.78449820379624	4.59152641729492	4.75149635063475	5.34376784687029	3.4529343229524	3.98141741500478	4.02254893155048	4.56421057368457	-1.98038919422894	0.000147119253471312	0.00280670097636947
Merged-chr13-22029282-3	chr13	22029210	22029410	+	573.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6333.0	NM_175659	319168.0	Mm.250564	NM_175659	ENSMUSG00000069302	Hist1h2ah	-	histone cluster 1, H2ah	protein-coding	3.6970983496158	4.03378091432187	3.79617834934247	3.44731475234649	3.56736142104532	3.46223466801103	3.52077114607203	3.64329604744079	-0.636290486408187	0.211605684132799	0.516329750073179
Merged-chr18-44400611-3	chr18	44400516	44400716	+	718.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027490, intron 4 of 10)	B3|SINE|B2	20116.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	3.25052458389421	3.0883411544021	3.46395588837306	3.27029298324501	3.21681218111783	3.17388050801544	3.29476831726799	3.30583615625854	-0.0900821786799952	0.867538966538405	0.950331199983684
Merged-chr11-84829120-4	chr11	84829017	84829217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046281)	promoter-TSS (NR_046281)	-61.0	NR_046281	74995.0	Mm.84413	NR_046281	ENSMUSG00000086799	4930502E09Rik	-	RIKEN cDNA 4930502E09 gene	ncRNA	8.22255693832446	8.04962965829879	8.09817298245997	8.10679289667194	7.94530530918493	7.95365278812071	8.02130365422049	8.0280581028637	-0.170814772003511	0.268247297262997	0.580076430005696
Merged-chr12-70145235-3	chr12	70145120	70145320	+	713.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8951.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	3.39562313584005	3.46722147356292	3.55905147867897	3.37099949250418	3.49762511129205	3.67554930484884	3.32503139595821	3.33518132713788	0.0704202386435212	0.88962733394585	0.95860823232862
Merged-chr2-101653038-3	chr2	101652933	101653133	+	759.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3501.0	NM_009019	19373.0	Mm.828	NM_009019	ENSMUSG00000061311	Rag1	Rag-1	recombination activating gene 1	protein-coding	3.58509500264064	3.55907177880308	3.25885660807057	3.68939307274105	3.85215863988285	3.86931124862322	3.96425304070618	3.98012033257236	1.09498254288628	0.0251195775126003	0.148874804976634
Merged-chr18-9865874-4	chr18	9865768	9865968	+	912.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 7 of 9)	intron (NM_130449, intron 7 of 9)	-92312.0	NM_153552	225160.0	Mm.219648	NM_153552	ENSMUSG00000024287	Thoc1	3110002N20Rik|AW107452|NMP-84	THO complex 1	protein-coding	4.60318381019675	4.63288133636283	4.29498060046047	4.84044395496106	4.34064360515269	4.77543127055056	4.50231571275368	4.60092724133073	-0.149675679582107	0.695176388113841	0.876438416691259
Merged-chr10-22390561-3	chr10	22390469	22390669	+	654.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-12244.0	NR_028580	100038752.0	Mm.392859	NR_028580	ENSMUSG00000096937	Gm10825	-	predicted gene 10825	ncRNA	2.20870136213513	2.15917904253286	2.12742879334128	2.03190538747629	2.84481713328719	2.53602006113461	2.66180978440553	2.49291771044627	3.47398902318254	1.82852574819786e-05	0.000470614899570549
Merged-chr8-36816246-4	chr8	36816129	36816329	+	907.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 4 of 17)	intron (NM_001194940, intron 4 of 17)	-83175.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	4.82914825497096	4.61338612912074	5.57030526823641	5.98112857462733	4.39025929031626	4.37482217314986	5.26858041451016	4.94145336548708	-1.04276300695941	0.142370579910028	0.419897244509492
Merged-chr10-80159987-4	chr10	80159897	80160097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	CpG	-7842.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	8.76171132061213	8.97410737715354	8.63567205682994	8.71089665850543	8.98665339906367	9.23100095012431	8.94912588756988	8.84269182304396	0.290254013710294	0.0744099973162009	0.294017386419999
Merged-chr14-59598000-4	chr14	59597902	59598102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168535)	promoter-TSS (NM_001168535)	-43.0	NM_001168536	71891.0	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	6.60903607655653	6.63718666033838	5.96764290132266	6.57454337586663	6.64901445665467	7.05418021880735	6.7101797479242	6.88649558788908	0.496304710295854	0.0408324907137605	0.204331823433265
Merged-chr4-43000581-4	chr4	43000465	43000665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009503)	promoter-TSS (NM_009503)	-58.0	NM_009503	269523.0	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	8.94158967304403	9.01630241922429	8.82679965857061	8.89388838954602	8.96310595339399	9.25434981559355	9.15302300762304	8.93739555676625	0.198311888724832	0.189652710380745	0.488626715611214
Merged-chr8-122475272-5	chr8	122475216	122475416	+	927.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153775)	promoter-TSS (NM_153775)	748.0	NM_001033142	68718.0	Mm.34356	NM_001033142	ENSMUSG00000014470	Rnf166	1110031E24Rik|AW555115|Zfp313l	ring finger protein 166	protein-coding	4.50605798693015	4.35570798377259	4.59132514489245	4.28839762274551	4.75250882479969	4.95246803323872	4.44224901714409	5.08811413890061	0.862250496168399	0.0195262482286203	0.125932156412992
Merged-chr2-181459297-5	chr2	181459081	181459281	+	936.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028125, intron 1 of 2)	CpG	245.0	NM_028125	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	4.18742571924133	4.37484783273672	4.33041832978676	4.3902166330937	4.42503769724643	4.66856769267113	4.17048272865082	4.60855611907094	0.346076602401554	0.368633122648232	0.673101867894841
Merged-chr1-182928035-2	chr1	182927935	182928135	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26753.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	3.08707219426191	3.0395643682622	3.08744534918672	3.46077481867335	3.05630155519924	2.84995897297262	3.13473222954921	3.25480068818697	-0.432569936926204	0.47838462109009	0.754532850325209
Merged-chr11-120518823-2	chr11	120518723	120518923	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-11904.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	3.18600209390793	3.07723795436643	3.12692888562658	3.11984815973627	3.35584268283378	3.35552662836702	2.92232551950437	3.24150125821208	0.406923814448723	0.469323990559679	0.748251025868274
Merged-chr1-57775096-3	chr1	57774996	57775196	+	962.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144882, intron 1 of 13)	CpG	235.0	NM_144882	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	4.30796880620865	4.08649186749877	4.63286001863489	4.3603035184283	3.83840177851569	3.99552563381415	4.16024550381643	3.81152278375286	-1.05195199973994	0.0159778018256075	0.109575484742742
Merged-chr6-122600365-4	chr6	122600276	122600476	+	948.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134391, intron 1 of 7)	MRLTR33|LTR|ERVK	2068.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	4.70769886200636	5.11281895954757	4.47650987117836	4.27103677605947	4.32138943964256	4.37483110213167	4.17616984753788	4.51527659816908	-0.733675906693928	0.0817638059748577	0.310355627831995
Merged-chr15-83561306-4	chr15	83561231	83561431	+	954.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-2242.0	NM_009775	12257.0	Mm.1508	NM_009775	ENSMUSG00000041736	Tspo	Bzrp|IBP|PBR|Tspo1	translocator protein	protein-coding	5.08265373043867	5.11754652104188	4.91231594726145	5.1978329281286	4.70261301480419	5.15679798222739	4.85210210889967	4.98022612040406	-0.331891038525829	0.306516013349306	0.618988968971523
Merged-chr7-45707013-4	chr7	45706921	45707121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016974, intron 2 of 3)	CpG	1774.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	6.59433324699629	6.34280596036	6.4787773938791	6.57800720387069	6.80973805419262	6.69003824234001	6.69691909032445	6.92411494195349	0.400719774540211	0.0526358940941458	0.239122434626449
Merged-chr7-34313466-4	chr7	34313359	34313559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-27850.0	NM_172741	233103.0	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	6.41250573379993	6.6266025167856	7.02953400539683	6.6370917631272	6.43902475777242	6.79034016265763	6.25013032719874	6.62545267933064	-0.228229466731555	0.345989834663059	0.654317722553851
Merged-chr4-126254977-4	chr4	126254852	126255052	+	951.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	1367.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	5.13481515636045	5.55605826287671	5.23537074182695	4.85688609554034	5.46298548229703	5.16914767131752	5.46688901414008	5.59079524894808	0.407322337683375	0.204888965254572	0.508411771234274
Merged-chr2-166108522-3	chr2	166108416	166108616	+	816.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 3 of 20)	intron (NM_001252579, intron 3 of 20)	46769.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	2.93603849860241	3.3813882635394	3.14205702584885	3.29796894482919	3.28932874653725	3.31562570852352	3.36090078897347	3.47455736642987	0.549188878260142	0.324999784528387	0.636488090877592
Merged-chr15-8710569-6	chr15	8710529	8710729	+	951.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_148938, exon 1 of 10)	5' UTR (NM_148938, exon 1 of 10)	178.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	3.93744949382193	4.20588887146735	4.04417569613139	3.91526697003099	4.07036244930371	4.52889247248309	4.07662118912264	4.54170802537942	0.732399833517498	0.0843248179169072	0.315948423055718
Merged-chr12-117385895-4	chr12	117385793	117385993	+	875.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48881.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	4.64571834964007	4.26881557365621	4.45807983011985	4.77665725625141	4.31676577398719	3.97078373884149	4.47713549473595	4.23420477561744	-0.691874354340962	0.0916533994077018	0.330905265860553
Merged-chr19-56724608-4	chr19	56724482	56724682	+	986.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007419, exon 1 of 1)	3' UTR (NM_007419, exon 1 of 1)	2210.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	5.34554908280133	5.0137905122346	5.80586371882494	5.37050865701776	4.68159304937485	5.15702978145925	5.40366753034713	5.5066288557632	-0.347706615716712	0.335413671809734	0.645812858302993
Merged-chr3-96629894-4	chr3	96629792	96629992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025875)	promoter-TSS (NM_025875)	-36.0	NM_025875	60365.0	Mm.261972	NM_025875	ENSMUSG00000038374	Rbm8a	2310057C03Rik|AA673428|Rbm8	RNA binding motif protein 8a	protein-coding	6.61252053838464	6.63789751441545	6.24968301944156	5.97966201119776	6.64398796917733	6.61242559828833	6.72129583859422	6.20441473508669	0.259332090872847	0.320981585722538	0.632737838956237
Merged-chr10-14328360-4	chr10	14328257	14328457	+	841.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	216679.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	4.70431057011074	4.64085472757588	5.68249746980016	4.81995988333623	4.50643350912403	4.56778554566861	4.93963487752467	4.78136565626654	-0.650407847672255	0.118426253950407	0.380752609943822
Merged-chr7-144471264-4	chr7	144471164	144471364	+	924.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007803)	promoter-TSS (NM_007803)	-329.0	NM_001252572	13043.0	Mm.205601	NM_007803	ENSMUSG00000031078	Cttn	1110020L01Rik|Ems1	cortactin	protein-coding	4.82007294566386	4.3943160997962	4.78456265733727	4.91965503036272	4.73013271314291	4.80296558424367	4.96360417426173	4.66596652544316	0.0808935598503683	0.819310127433321	0.930789344025543
Merged-chr1-89454708-4	chr1	89454618	89454818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178119)	promoter-TSS (NM_178119)	-93.0	NM_178119	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	8.22883034939175	8.12927292325259	8.21831912018805	8.50439964936814	8.29142197390593	8.25761629781355	8.49300687932112	8.18279057272959	0.0323309594894273	0.850279650746227	0.943548871435164
Merged-chr6-134630604-4	chr6	134630488	134630688	+	964.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026345, intron 1 of 3)	Charlie4a|DNA|hAT-Charlie	1900.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	5.1620857575832	4.95366113484317	4.89906540873566	4.9784587112902	5.05242717506739	5.20983282913907	4.72153447431255	4.82038963443816	-0.0637991882707782	0.845073549104739	0.941352605701595
Merged-chr4-119339099-4	chr4	119339002	119339202	+	893.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270446, intron 5 of 9)	intron (NM_001270446, intron 5 of 9)	-18579.0	NM_001110130	66101.0	Mm.304080	NM_028677	ENSMUSG00000060288	Ppih	1100001J08Rik|2010111B15Rik|4833408F11Rik|AI464484|CYP-20|CYPH|D4Wsu43e	peptidyl prolyl isomerase H	protein-coding	4.59940950001751	4.71474612523786	4.5190735005814	4.59287859457989	4.49506365282604	4.51697059678352	4.2225955587384	4.87723163127211	-0.13480185520558	0.719230283665364	0.887855791496547
Merged-chr19-10278872-4	chr19	10278778	10278978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	25999.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	5.98952935589639	6.47014771399199	6.13858013197649	5.91041066768437	6.19717448949218	6.42728905384316	5.68763732619979	5.89335392868514	-0.0888903525537629	0.753362764824701	0.902798885097597
Merged-chr5-24542863-4	chr5	24542743	24542943	+	893.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177676)	TTS (NM_177676)	-1865.0	NM_001310476	117590.0	Mm.207071	NM_080444	ENSMUSG00000038204	Asb10	Asb-10|BB137407	ankyrin repeat and SOCS box-containing 10	protein-coding	4.5378642076961	4.81275510576962	4.69563159786713	4.68843794561759	4.35440704158478	4.5369874033362	4.77851597729838	4.40404742964007	-0.366701553128755	0.312321906847762	0.624266687470637
Merged-chr11-52361532-4	chr11	52361477	52361677	+	901.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011694, intron 1 of 8)	CpG	715.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	4.82407126398493	4.43721490919823	4.89312110064199	4.68506419781395	4.40184601183074	4.99618988561529	4.48794743055832	4.88976543164045	-0.0149481057540096	0.96848166816099	0.988694268692349
Merged-chr15-88129088-3	chr15	88128965	88129165	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-185809.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	6.13495382888772	6.25580594813566	6.66682472023943	6.64569858056135	3.77803302686234	4.07477135983628	3.98451876797394	3.99940783329559	-6.78894808042711	1.8898441587523e-18	5.13424493800877e-16
Merged-chr2-91457718-2	chr2	91457618	91457818	+	994.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001145857, exon 1 of 12)	exon (NM_001145857, exon 1 of 12)	187.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	2.98797597079103	2.95179310316125	3.10989162189487	2.98364134084489	3.2571434366487	3.09671600718457	3.03977635131835	3.16489163972092	0.563424886748676	0.313845148613969	0.625806439112938
Merged-chr16-85175030-2	chr16	85174938	85175138	+	864.9166869999999	f0_balb.idr|f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1331.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	4.06027811813121	4.42865906320012	4.53116184837758	4.78010318301957	3.29465123700537	3.45002502908	3.66597826933281	3.47696174921302	-3.20938364858954	1.29399647679802e-08	6.72793098772875e-07
Merged-chr1-16216779-4	chr1	16216681	16216881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110899.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	6.08780055456951	6.29717317386973	6.23135422908535	6.1105394566019	6.45778151077374	6.584824338629	6.09990111466231	6.0182485769146	0.202837419400318	0.408541297664012	0.70438176546703
Merged-chr1-91043595-4	chr1	91043521	91043721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-9823.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	5.1715217172632	5.07703288882605	5.23473395149218	5.53423912133477	4.92012517895798	5.1042488051263	4.97784548937092	5.40128955653304	-0.325466108824286	0.316149927367872	0.628034424554481
Merged-chr10-69186071-4	chr10	69185964	69186164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22488.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	7.00658684141987	6.84530599842946	7.09055436198371	6.9374123795502	7.02794516749398	6.95710158091861	6.87086126537997	6.77559963635141	-0.0730585383863535	0.707151050898716	0.882396225404233
Merged-chr4-43454691-4	chr4	43454633	43454833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007654)	promoter-TSS (NM_007654)	-107.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	4.78893004347075	5.12468541471615	5.17865637147356	5.08048452738792	5.09323891467293	4.88443978437848	5.42344518501562	4.94181413651633	0.0973647387776735	0.765714676896176	0.908357650317684
Merged-chr17-86168786-3	chr17	86168676	86168876	+	894.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011104, exon 1 of 15)	exon (NM_011104, exon 1 of 15)	991.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	3.34889712070678	3.33234572798307	3.45950320351708	3.42563124209486	3.30797713133968	3.33993982990418	3.49657260360423	3.40377638989623	-0.027584237620283	0.956650637692859	0.984720649427078
Merged-chr17-78382903-5	chr17	78382853	78383053	+	979.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 7 of 9)	intron (NM_001360407, intron 7 of 9)	35199.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	4.54150424349878	4.64440689053558	5.30337466490143	3.84601493027131	4.28805355322027	4.63468937797139	4.29586662387251	4.73246662086204	-0.399122996842564	0.411516784151511	0.706957091668969
Merged-chr19-53423564-4	chr19	53423483	53423683	+	898.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32949.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	4.9348688825782	4.83800309833251	5.05103891435316	4.43315814574982	4.34770792403307	4.40615859340668	4.25718331176684	4.11235711180854	-1.20996216877443	0.00273305447183754	0.0296820390984016
Merged-chr7-30563275-4	chr7	30563179	30563379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170760)	promoter-TSS (NM_170760)	-61.0	NM_170760	233073.0	Mm.34790	NM_170760	ENSMUSG00000078765	U2af1l4	AA407033|AF419339|AI451269|AW553050|U2af26	U2 small nuclear RNA auxiliary factor 1-like 4	protein-coding	7.14719729642689	7.18468049721717	6.59644765495736	6.56840252983258	7.00566124926556	7.34701865241644	7.3077475102784	7.00174716548694	0.376206339804014	0.114553221559016	0.374387426298231
Merged-chr3-54245248-2	chr3	54245148	54245348	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253682, intron 3 of 11)	intron (NM_001253682, intron 3 of 11)	89191.0	NM_001253682	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	3.334204019569	3.1134611159498	3.0904628562066	3.34329959258671	3.30260331479035	3.33023449275947	3.20683063844097	3.62860964952683	0.510577670119304	0.352560732936446	0.659646200606769
Merged-chr16-89960603-2	chr16	89960503	89960703	+	797.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145886, intron 1 of 27)	intron (NM_001145886, intron 1 of 27)	224.0	NM_009384	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	3.01639263692519	2.80183921703896	3.17615191440599	2.78016387040883	2.80959860080243	3.00777690748125	2.61734238027417	2.8333857883303	-0.55905085598465	0.389572794248021	0.68985475972186
Merged-chr6-100288272-2	chr6	100288172	100288372	+	579.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019743)	promoter-TSS (NM_019743)	-914.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	2.74822139164722	2.67623013213002	2.8195916113495	2.64136747776442	3.2249942498336	3.12519316803061	3.11436477785286	3.23086534462027	2.03455453039706	0.000600917509749466	0.00895077468550145
Merged-chr10-99268461-1	chr10	99268361	99268561	+	1000.0	f0_balb.idr	TTS (NM_026268)	TTS (NM_026268)	5230.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	5.54500322001662	5.21244982230788	5.5459707684704	5.811031359252	5.3198833569327	5.18606483834541	5.43835504839943	5.31591947164924	-0.426210126849577	0.154560012835481	0.439801241388062
Merged-chr5-117388493-3	chr5	117388385	117388585	+	919.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028128, intron 1 of 10)	intron (NM_028128, intron 1 of 10)	538.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	3.23703815130686	3.07664728796577	3.51233504341482	3.25701136104317	3.25908663315463	3.28689943349088	3.63549638669646	3.29556220726695	0.356780188241149	0.513387200109389	0.77646733267772
Merged-chr3-88648308-4	chr3	88648193	88648393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001198911)	TTS (NM_001198911)	4849.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	7.22955762768507	7.26827228221866	6.86825918141075	6.97526527626209	7.10797555375377	7.17791254580804	7.07394924715999	6.65032423148426	-0.100405796664161	0.641904186779287	0.848926963652902
Merged-chr4-108619964-4	chr4	108619870	108620070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177045)	promoter-TSS (NM_177045)	14.0	NM_177045	319965.0	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	6.92406655306316	7.00354028976487	6.96474781757295	7.03768854237149	7.0247050276911	7.1670075255536	7.16450572420456	7.11801969846373	0.175526476451531	0.339115710866606	0.648415547836839
Merged-chr5-24069147-4	chr5	24069037	24069237	+	986.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31453.0	NM_026448	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	5.18944524221804	5.16073322063169	5.52178861013585	5.81041440173671	5.29124925259708	5.18718627795523	5.83685470457854	5.40719402090643	-0.0212244421123307	0.949423973936856	0.981872090911877
Merged-chr2-152226824-4	chr2	152226713	152226913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007788)	promoter-TSS (NM_007788)	-27.0	NM_007788	12995.0	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	CK2|Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	7.12148297592267	6.80087186217377	6.7213328155093	6.53267693153772	7.02135095374129	6.88333726679675	7.05332784058351	7.01388363766662	0.278759193597218	0.194991880466833	0.495709083262081
Merged-chr4-126968261-4	chr4	126968172	126968372	+	995.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357201)	promoter-TSS (NM_001357201)	-349.0	NM_001114399	67785.0	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	5.23838088162784	5.76520126993822	5.53138695526432	4.83771331278516	5.5684778635631	5.59696548002825	5.50328665412649	5.06044754871827	0.126470472292717	0.717604355620622	0.887104549117071
Merged-chr2-145743474-3	chr2	145743364	145743564	+	790.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	42269.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	3.28673712216766	3.37508991488559	3.34636749104304	3.38586311783725	3.36595065097816	3.45974593388547	3.21440526447066	3.65130592255986	0.271770067052279	0.600551121923413	0.826836656557895
Merged-chr15-99396901-5	chr15	99396840	99397040	+	894.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171036, intron 2 of 10)	ID4|SINE|ID	3721.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	2.60940820501648	2.6980308444708	2.60976121450113	2.50795704507001	2.29753172555639	2.30423315527995	2.27776842845632	2.35390273041643	-1.90984076678826	0.0144608179419118	0.102194853086511
Merged-chr10-89443333-4	chr10	89443253	89443453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079876, intron 1 of 10)	intron (NM_001079876, intron 1 of 10)	614.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	8.67105048099105	8.74271690320188	8.98931834378731	8.93507403057447	8.74268384561811	8.77203606028235	8.73939938023641	8.66689833029208	-0.141008443832316	0.352112263294401	0.659311427742586
Merged-chr1-181616295-4	chr1	181616205	181616405	+	779.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104854.0	NM_207280	403180.0	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding	3.79437713586292	3.74462496674615	3.68512961286766	3.96195262967889	4.05197362673701	3.68235665567513	3.77969826123046	4.194657456256	0.382605975740352	0.411128900647752	0.706563585465058
Merged-chr5-64210036-3	chr5	64209922	64210122	+	711.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-20335.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.07931070525921	4.1596126720104	4.46169296174087	4.11940516994107	3.33970136057429	3.58565989328511	3.76491826510795	3.88553082738386	-1.63439541417161	0.000986002860241633	0.0132871445643959
Merged-chr11-53772724-4	chr11	53772629	53772829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159393, intron 2 of 9)	intron (NM_001159393, intron 2 of 9)	2256.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	6.35043280684211	6.64410490682648	6.38910989776924	6.63266194837225	6.76975390799674	6.75386833388139	6.73515461208654	6.40290691174095	0.223053351366049	0.311436151075828	0.623476692375935
Merged-chr14-19751201-4	chr14	19751086	19751286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008695)	promoter-TSS (NM_008695)	-71.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	7.21223480284698	7.12104571109339	7.54344404183864	7.4511073297877	6.87223413985332	7.37941326314874	7.41817119329858	7.02977621165847	-0.213875060479379	0.326425310964725	0.637923349237677
Merged-chr15-95900069-4	chr15	95899973	95900173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 3 of 19)	intron (NM_175344, intron 3 of 19)	-70001.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	6.34517965433018	6.23407019848369	6.21498728803714	6.41791296658609	6.47700406521572	6.10660634295332	6.36592261943088	6.23014432398632	-0.00141940327003093	0.99503624292614	0.998191571091689
Merged-chr14-14348629-7	chr14	14348529	14348729	+	853.81427	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008369, intron 3 of 11)	intron (NM_008369, intron 3 of 11)	2134.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	3.12729512516224	3.32857682501725	3.25131509369564	3.02707338954128	3.04288472680803	3.42380992599845	3.40276806497069	3.46605613212135	0.577939547373344	0.29819106342482	0.610320314800708
Merged-chr18-82909826-4	chr18	82909729	82909929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1050.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	5.24606537698913	5.69692827593726	5.81850045067255	5.15802580420523	5.54760240458957	5.80390123305773	5.35064910419765	5.79226880555789	0.230746803701723	0.461303789823513	0.743095083527912
Merged-chr1-154003873-1	chr1	154003773	154003973	+	630.333313	f0_balb.idr	Intergenic	Intergenic	103944.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	3.64828192294503	3.31939881846987	3.54704897389367	3.50059568076862	3.58823307089997	3.60821814082878	3.36561345667923	3.49107243040056	0.0415898048502225	0.933508601329394	0.97600189092281
Merged-chr16-10967138-4	chr16	10967030	10967230	+	940.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	25991.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	4.91245842904632	4.53049717942765	4.84671914352308	4.30836085430584	4.59158729477786	4.53329665569038	4.64115321503464	5.0620632570465	0.142314864893566	0.714204592747324	0.885697313573214
Merged-chr16-90043085-4	chr16	90042960	90043160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68361.0	NM_001145886	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	7.11736599385995	6.74293048120198	6.70204585374875	7.11344509148497	6.90020820923595	6.78354251684802	6.77115210449904	6.90969249268508	-0.137216180392923	0.516236826717278	0.778022424546552
Merged-chr13-54072682-4	chr13	54072592	54072792	+	850.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027324, intron 1 of 10)	intron (NM_027324, intron 1 of 10)	847.0	NM_027324	14057.0	Mm.134191	NM_027324	ENSMUSG00000021474	Sfxn1	2810002O05Rik|A930015P12Rik|f	sideroflexin 1	protein-coding	4.55679621675277	5.0984742919371	4.46217189695565	3.79708832982554	5.47556555851267	5.47894737242403	4.58111223830049	4.98304617509639	1.21444528601376	0.00893375258128798	0.0727902443891366
Merged-chr7-12010690-3	chr7	12010534	12010734	+	873.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30665.0	NM_001166731	628946.0	Mm.484974	NM_001166731	ENSMUSG00000095864	Vmn1r77	Gm6935	vomeronasal 1 receptor 77	protein-coding	3.67865609422851	3.53205363075602	3.87696480080971	3.0598580591973	3.34131594949714	3.50224866931272	3.6094684470325	4.32989156729775	0.540314486910191	0.366384521986065	0.670851034632856
Merged-chr19-10843055-3	chr19	10842966	10843166	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023044, exon 1 of 8)	exon (NM_023044, exon 1 of 8)	522.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	5.57762804872999	6.11870706992475	5.4873641117627	5.43231537413787	6.20479522135274	6.43894264760397	5.76491353608998	6.07780898087508	0.736432460759485	0.0131683679710569	0.0957926400775782
Merged-chr7-121120347-4	chr7	121120253	121120453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139310, intron 12 of 28)	intron (NM_139310, intron 12 of 28)	36915.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	7.51796508198744	7.61018348707723	7.44413866821962	7.83616242164365	7.59958016690066	7.13193513048497	7.56134104153469	7.28479576286415	-0.270881605985232	0.178427402870266	0.474273534250155
Merged-chr13-69545188-3	chr13	69545087	69545287	+	880.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11323.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	3.66358472057796	3.52547158835255	3.38242613216091	3.64306025196645	3.64842673669166	3.67443299165528	3.59802713857593	3.66199550786921	0.255262745576703	0.59319061650679	0.822553370861762
Merged-chr13-41079625-4	chr13	41079499	41079699	+	953.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145802, intron 1 of 11)	CpG	107.0	NM_001145803	17152.0	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	5.34477377586121	4.94241454990459	4.88689086522495	4.63279441501188	4.91072555349456	5.06169896212606	4.74894896010713	5.08742026475747	-0.0086165012902546	0.980512241380722	0.99281244474172
Merged-chr2-11188469-4	chr2	11188374	11188574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	C-rich|Low_complexity|Low_complexity	16092.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	6.13682073305726	5.74590475893636	6.09618777998742	6.24081926291115	6.40867632513993	6.25127091570355	6.24176517913693	6.45703185402746	0.407055328951907	0.0920192132074274	0.331754828389377
Merged-chr10-99194831-4	chr10	99194725	99194925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 12 of 12)	intron (NR_153333, intron 12 of 12)	-68406.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	5.88619715249906	5.96273978960068	6.2233626366163	6.15664079353635	6.13432209404966	6.08741324910802	5.8332362425033	6.20034933894191	0.00484796320002513	0.984166223761249	0.994237242628259
Merged-chr1-191097820-3	chr1	191097771	191097971	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030060)	promoter-TSS (NM_030060)	-543.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	4.49556029348301	4.69371375493398	4.57768065173871	4.14004320893125	4.49560988178302	4.5398254832987	4.59472460153361	4.68763005971692	0.230566687514188	0.545445054692388	0.795921063325396
Merged-chr4-63840634-4	chr4	63840551	63840751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009403, intron 2 of 3)	intron (NM_009403, intron 2 of 3)	20633.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	6.10423333182648	6.08546929454648	6.26428888597512	6.56466316499933	5.96933054419549	6.28162629120715	6.17523817698634	6.33228538952355	-0.150176741649225	0.55073384081143	0.798673593705145
Merged-chr18-62985876-4	chr18	62985758	62985958	+	859.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028017, intron 5 of 11)	MER102c|DNA|hAT-Charlie	7942.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	4.14760422014581	4.10842649575559	3.93686755825133	4.29169078024004	4.61919411313058	3.94065410273478	4.17780644851373	4.78374080769955	0.700571036328469	0.118060916786395	0.380134255210221
Merged-chr1-6976404-3	chr1	6976304	6976504	+	840.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB1|LINE|L1	-112516.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	4.138212822866	3.92822366277396	3.95105792953338	4.45333995804725	3.73632593132967	3.9669311894366	3.88377515399814	4.09190897618914	-0.625057893224469	0.171511376768097	0.464854477457024
Merged-chr3-51797027-4	chr3	51796973	51797173	+	819.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	135894.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	4.23300418157831	3.71369780035756	3.90799298289512	4.0180814720632	3.88973441810134	3.97605854449186	4.21401666338602	4.31031001406432	0.325344274822436	0.464245993611527	0.745287689550157
Merged-chr11-32671662-4	chr11	32671579	32671779	+	851.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	29124.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	4.07334775214	3.5867236923762	3.87902868197102	4.20878216330587	4.12951483499536	3.76859714600588	4.18331959976397	4.07145624013373	0.21584644862916	0.646689738369057	0.851401409677112
Merged-chr3-105688926-5	chr3	105688901	105689101	+	802.273315	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1430.0	NM_017397	53975.0	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	4.21869820957421	4.29166303498152	4.26215477571509	4.35121853087514	3.98212924370365	4.04979443190077	4.242778379515	3.75104360594571	-0.697514991028833	0.0969259798628913	0.341100282836979
Merged-chr16-20535385-4	chr16	20535285	20535485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009679)	promoter-TSS (NM_009679)	-95.0	NM_001302970	11773.0	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	8.85623137645237	9.07764223212587	8.81453617435421	8.82951437871163	8.61512251148848	8.92284709147177	8.7094777649584	8.55837167803193	-0.239973542276801	0.133949073709038	0.407538410666194
Merged-chr16-4964364-4	chr16	4964269	4964469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271586)	promoter-TSS (NM_001271586)	81.0	NM_001271586	74684.0	Mm.374835	NM_001271586	ENSMUSG00000022543	4930451G09Rik	-	RIKEN cDNA 4930451G09 gene	protein-coding	9.04792750713152	9.2077885507779	9.25184803928703	9.13013016457952	8.78075846507634	9.10449129432205	9.28784097300734	8.87472391782881	-0.169186046663075	0.310519783535482	0.622616866559057
Merged-chr7-41633549-4	chr7	41633457	41633657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360680)	promoter-TSS (NM_001360680)	26.0	NM_001360674	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	7.23536583920568	7.40699947881535	7.47358720554251	7.57450620744713	7.39252895142134	7.51200802550446	7.63519515280699	7.48705241214481	0.0912496641258916	0.615081708004723	0.834271521286409
Merged-chr10-85161909-1	chr10	85161809	85162009	+	557.0	f0_balb.idr	intron (NM_007771, intron 1 of 12)	intron (NM_007771, intron 1 of 12)	23145.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	2.83724834022085	2.68711903601979	2.89433938690262	3.04156035011323	2.62734375033836	2.68484675110532	2.57483562818306	2.50836208092859	-1.41114912447309	0.041133604336325	0.205187211909165
Merged-chr17-53570557-4	chr17	53570458	53570658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151733, intron 1 of 16)	intron (NR_151733, intron 1 of 16)	3587.0	NR_151733	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	7.56759154935516	7.63012867537831	7.60441538731068	7.77092100732518	7.56320580265338	7.58305186168904	7.84050741566795	7.70814065117045	0.0303246824349928	0.861283051839365	0.947574515069552
Merged-chr5-123620962-4	chr5	123620862	123621062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 12 of 18)	MTA_Mm|LTR|ERVL-MaLR	-47947.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	5.16914448067862	5.6115359612103	5.44209945991778	4.86784334018994	5.11676149671772	5.58778892699401	5.33087730969195	5.35396718498389	0.10858215239348	0.744727869291375	0.899341471417509
Merged-chr4-59808637-4	chr4	59808520	59808720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	B3A|SINE|B2	2970.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	5.38947441925443	5.80693043987108	5.74596074724959	5.90213045453704	5.78253924195251	5.50442481114638	5.78587229423346	5.28856000868412	-0.203941899972513	0.482345244017589	0.75723096876771
Merged-chr2-164403061-3	chr2	164403012	164403212	+	874.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009036)	promoter-TSS (NM_009036)	-82.0	NM_009036	19668.0	Mm.473794	NM_009036	ENSMUSG00000017007	Rbpjl	RBP-L|Rbpsuhl	recombination signal binding protein for immunoglobulin kappa J region-like	protein-coding	3.56038856352653	3.73442512044441	3.71787461455589	3.41668640081309	3.47958529668164	3.36240939631178	3.70195646062908	3.85513037697967	0.019631750863042	0.969043503498293	0.988869722693227
Merged-chr16-55803180-4	chr16	55803082	55803282	+	906.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18956.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	4.75847608075866	4.83943244650421	5.10386411404882	4.49515883838077	4.65580176209114	4.2481705799969	4.70011144159441	4.38212974948519	-0.622305319970768	0.111123004753157	0.368291051234337
Merged-chr8-61449033-3	chr8	61448948	61449148	+	939.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-38686.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	3.82497533883283	3.58487251145348	3.68104615988632	3.71038886383985	3.36104283159874	3.74670314361485	3.44659735904012	3.62693368229343	-0.499596446636145	0.309638567407592	0.621833440934041
Merged-chr18-32184238-4	chr18	32184136	32184336	+	927.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011946, intron 1 of 16)	Lx9|LINE|L1	21147.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	4.82483095717942	4.80052027003489	5.23229470948155	5.30222852819558	4.72794944145713	4.62347647858649	4.68788939185761	4.48761008154612	-0.887659597326824	0.0127536426271009	0.09388680613863
Merged-chr8-84662393-4	chr8	84662283	84662483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010499, exon 1 of 1)	exon (NM_010499, exon 1 of 1)	469.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	6.56674924013676	7.25907666229979	6.46134920508668	5.82974332009764	7.04923394608482	7.38490105057285	7.02061098868006	6.96777329199742	0.679860912006057	0.0273476947314951	0.15760517879468
Merged-chr16-55776505-4	chr16	55776410	55776610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45628.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	7.26064648684342	7.75182756675767	7.04019885432702	6.30358688927718	7.76020533322332	7.85416254200714	7.19299735033024	6.68496693142723	0.346255999805037	0.500369453095132	0.768850577358824
Merged-chr1-37474831-4	chr1	37474739	37474939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 5 of 15)	intron (NM_173870, intron 5 of 15)	13766.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	6.5831938647867	6.85890618098244	6.84012168309987	6.90713018794834	6.87527939687804	6.87271809248932	6.79179070351713	6.75086245793381	0.0181324532764299	0.927738401684677	0.973615800862715
Merged-chr6-99024783-4	chr6	99024688	99024888	+	966.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 4 of 17)	intron (NM_001197321, intron 4 of 17)	3510.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	5.32703329594905	5.35044000537471	4.91346063963641	5.00441793986013	5.22995795920641	4.84639070474377	4.81326939666437	5.11820785923725	-0.251691551449937	0.450116983057233	0.735140120623899
Merged-chr2-124897422-4	chr2	124897300	124897500	+	763.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-170727.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	4.27934004205761	4.38104528810047	4.14264093581056	4.52537096368366	4.00950798261992	4.05639761957788	4.12506833236427	4.40109175814475	-0.497299057447471	0.227226449235957	0.535909590131417
Merged-chr8-124663351-4	chr8	124663213	124663413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175149)	promoter-TSS (NM_175149)	56.0	NM_175149	69551.0	Mm.261920	NM_175149	ENSMUSG00000031983	2310022B05Rik	-	RIKEN cDNA 2310022B05 gene	protein-coding	6.28145728223613	6.2976888560497	6.34051301492358	6.22164800705881	6.43965091151984	6.78695227492	6.96502350332824	6.63666892254805	0.631952129447234	0.00491655258768594	0.0469675609500601
Merged-chr11-95805812-3	chr11	95805722	95805922	+	825.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18678.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	4.07704715549374	4.06593981529326	3.71101905382824	3.72161894952028	3.6846332402542	3.59557878558645	3.58664683307202	3.477542957007	-0.93886739721379	0.0555818575723643	0.246788162943255
Merged-chr2-160617433-3	chr2	160617308	160617508	+	814.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28489.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	3.06041538892716	3.28397237819075	2.9443695171954	3.06402822095694	2.88904979204711	2.85294750518182	2.66841729973129	2.74637425196629	-1.35834179187749	0.0359167363556354	0.188283795629531
Merged-chr19-25139518-2	chr19	25139419	25139619	+	873.5499880000001	f0_c57.idr|f1_c57bl6.idr	intron (NM_028785, intron 23 of 47)	intron (NM_028785, intron 23 of 47)	-97456.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	3.86821093858267	3.88196285643572	3.92988340425282	3.43196097836068	4.84390427047938	4.98738741615591	4.82198366202585	4.33815939591684	2.48204803840622	5.13231767384629e-09	2.87874893385898e-07
Merged-chr2-155585641-4	chr2	155585551	155585751	+	987.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291111, intron 1 of 11)	MIR|SINE|MIR	7159.0	NM_001291111	14854.0	Mm.252316	NM_008180	ENSMUSG00000027610	Gss	AI314904|GS-A/GS-B|GSH-S	glutathione synthetase	protein-coding	4.90371321707146	5.47292595063816	5.31052732603631	5.22651599638824	5.31711451972605	4.9606798694078	5.19476727263236	5.30683029440118	-0.0692647169764336	0.825142098084159	0.932947698311979
Merged-chr12-32910277-4	chr12	32910205	32910405	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43484.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	4.00769931787233	4.26743223382427	3.69070848901271	4.34427211348196	3.79020397484342	3.61547713343759	3.89460428141696	4.05189580532239	-0.730503955549323	0.128868150815904	0.399380073270456
Merged-chr11-44546413-4	chr11	44546330	44546530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 4 of 5)	intron (NM_001166553, intron 4 of 5)	27053.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	5.73151457938181	5.93714647102615	5.68050909955485	5.91543120757148	6.18773925812649	5.56332364787684	5.89214507526799	5.9398899125701	0.160708432094906	0.549698103961966	0.798118499957342
Merged-chr12-83929370-4	chr12	83929266	83929466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7432.0	NR_073564	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	6.23390654312612	6.4584937120057	5.67858132956932	6.36234380124109	6.01776097831329	5.91155840300467	5.47207432078625	5.80693365918314	-0.629598461713107	0.028966862959736	0.163546627953601
Merged-chr15-102224687-4	chr15	102224622	102224822	+	880.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013566, exon 3 of 15)	exon (NM_013566, exon 3 of 15)	7213.0	NM_013566	16421.0	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	4.4165523779452	4.72287317387384	4.37449172195196	4.16698949377577	4.38306796453692	4.20928674898155	4.55341653928891	4.32757949113613	-0.118282527436482	0.767074040286246	0.908863633051277
Merged-chr5-130222334-4	chr5	130222225	130222425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027854)	promoter-TSS (NM_027854)	-10.0	NM_027854	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	6.72879179013972	6.79806196770605	6.22858597109329	6.52219408789727	7.30225932709535	7.00587093575198	6.88648256363737	6.72517941961827	0.590519852849853	0.0124185507863705	0.0920099954640439
Merged-chr13-33957032-3	chr13	33956914	33957114	+	597.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040707, intron 3 of 4)	intron (NR_040707, intron 3 of 4)	-7645.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	3.24383356228522	3.18377898130804	3.12432072086243	3.35367012086274	3.27108357365982	3.23318782609822	3.34050586697177	3.24257824037767	0.126707300684399	0.812954009936671	0.927731304883839
Merged-chr4-141672503-4	chr4	141672437	141672637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8422.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	6.70441006659206	6.54701398567663	6.27172941891921	6.22565921571103	6.10296373475671	6.34894508850671	6.31378177031274	6.28628416899575	-0.272064875072415	0.25372813925558	0.565032649092237
Merged-chr13-59976135-2	chr13	59976060	59976260	+	905.875	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53551.0	NR_046142	328263.0	Mm.123405	NR_046142	ENSMUSG00000114531	A530065N20Rik	A530065N20	RIKEN cDNA A530046M15 gene	ncRNA	2.88713277623138	3.03129690849323	3.00415935610253	2.95193571493123	2.69013628268546	2.93175046271867	2.68281150481219	2.75805611906025	-0.95897469051529	0.128547368582955	0.398913247084019
Merged-chr3-89911390-4	chr3	89911243	89911443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	1853.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	8.30027386969606	8.38595381911852	8.42194593590343	8.30052166809679	7.93173187871969	8.04340276876926	8.11753881346273	8.09397134758883	-0.391294390171618	0.0108447813612405	0.0837133383051445
Merged-chr5-124047188-4	chr5	124047104	124047304	+	921.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-14944.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	4.12411901888603	4.1147654191265	4.28618352832511	4.33330444137112	5.04431319994978	4.77601371954111	5.11862037653543	4.74894165303587	1.53060617196146	3.57729311568378e-05	0.000844387554976125
Merged-chr2-45116781-1	chr2	45116681	45116881	+	1000.0	f0_c57.idr	intron (NM_001355288, intron 1 of 10)	intron (NM_001355288, intron 1 of 10)	661.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	4.05349179268988	4.57450865568267	4.10865332958975	3.60672973883427	4.66887391995258	4.80255077817089	4.45843819353809	4.59238400420463	1.19075439355611	0.00778572530315617	0.0659032157632719
Merged-chr4-103282458-3	chr4	103282356	103282556	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163494, intron 1 of 7)	RLTR22_Mur|LTR|ERVK	8407.0	NM_027612	70941.0	Mm.158501	NM_027612	ENSMUSG00000028520	4921539E11Rik	-	RIKEN cDNA 4921539E11 gene	protein-coding	4.67305436945839	4.64568333422948	4.79851293174914	4.80920769880868	3.4613705047652	3.51986564046285	3.5394902075482	4.0511189252145	-3.0844418794699	2.83531991141886e-09	1.67481523630608e-07
Merged-chr10-69870528-2	chr10	69870428	69870628	+	877.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_170729, intron 9 of 40)	intron (NM_170729, intron 9 of 40)	-55004.0	NM_170687	11735.0	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	3.25071284705162	3.31405473439006	3.13532330670103	3.1147703349786	3.19526824641027	2.97449864562698	3.18267802628833	3.30347459501509	-0.118713714611088	0.831039146125701	0.935217950704842
Merged-chr3-116858520-6	chr3	116858422	116858622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1045.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	4.74110745962522	5.03206221253318	5.3038403733625	5.21570146619823	5.27190465025559	5.38807499240144	4.88371903761814	5.2714353620189	0.221900998278063	0.498086961926327	0.767487809303244
Merged-chr4-101292179-4	chr4	101292099	101292299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-26917.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	6.56837676116778	6.19723495183708	6.43822847785036	6.63270545416481	6.61891078459467	6.11566999363584	6.72283477885082	6.41621412288575	0.0285829326292299	0.906533902369721	0.965374636270914
Merged-chr10-127595488-3	chr10	127595394	127595594	+	809.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	25654.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	3.35707491895297	3.24311301465917	3.52023194226696	3.40084013625924	3.34609210963901	3.47089993559496	3.40084479624166	3.46629960285793	0.12278124978445	0.808736433030919	0.926138274128125
Merged-chr1-88589192-4	chr1	88589117	88589317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	37700.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	6.55304425401777	6.21489716277819	5.91507728434918	6.28878639525472	6.28391103528916	6.11711553985238	5.88503190751328	6.34190595020797	-0.137356525309048	0.591280476688069	0.821525680896513
Merged-chr3-88488518-4	chr3	88488416	88488616	+	924.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	4796.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	4.27645546509095	4.17960965954321	4.32202587523642	3.91153320211073	4.5694671222418	4.80162625587769	3.95432492060993	4.44511096638504	0.7320869137557	0.0887891363744384	0.325166734316159
Merged-chr1-64690189-3	chr1	64690083	64690283	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038009, intron 1 of 1)	intron (NR_038009, intron 1 of 1)	476.0	NR_038009	69941.0	Mm.69044	NR_038009	ENSMUSG00000087213	2810408I11Rik	-	RIKEN cDNA 2810408I11 gene	ncRNA	4.4756331535224	4.6078471915148	4.70071702228178	4.15392139239377	4.79286876183992	4.47706219004447	4.08266489248534	4.09690064480991	-0.190037665651594	0.665564888927633	0.861482624541591
Merged-chr3-154510415-4	chr3	154510346	154510546	+	885.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86265.0	NM_009968	12972.0	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	4.26774089500259	3.75920715634563	4.17101539562228	4.52137086768851	4.83574130546271	4.53217419015706	4.46293264479659	4.39920646019284	0.804052329729592	0.0682930812316502	0.279081021299095
Merged-chr17-79895443-4	chr17	79895278	79895478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357752, intron 1 of 13)	CpG	745.0	NM_178050	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	5.73854266203528	5.8178016840647	6.40809661715833	5.87504678183859	5.93130964500171	6.24214675451194	5.9067242583895	6.14276450176957	0.122066208458471	0.652756232625068	0.854764223296605
Merged-chr1-132384880-2	chr1	132384823	132385023	+	787.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_178874, intron 1 of 4)	intron (NM_178874, intron 1 of 4)	5395.0	NM_001311107	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	3.06583574195838	3.55215218091044	3.06622049009343	2.75570026427231	3.30565892010555	3.29973969611445	2.78294221502466	2.93373952785515	-0.166908307720466	0.805290433319185	0.925171083261684
Merged-chr13-105266897-4	chr13	105266805	105267005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 2 of 7)	intron (NM_001360891, intron 2 of 7)	26109.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	5.72429190225707	5.22764124392364	4.65405269865052	5.58401250077552	5.62880027656522	5.39497975086161	5.34602225322551	5.18191170456754	0.0651253275292135	0.85646036848155	0.945968477564214
Merged-chr19-46599693-3	chr19	46599590	46599790	+	922.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146099, intron 1 of 3)	intron (NM_146099, intron 1 of 3)	584.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	3.41949806046307	3.62504410237238	4.04460615434425	3.74193140009767	3.60257080832833	3.94072773737132	3.75384100971597	3.86567015170214	0.191150324776393	0.696035661245285	0.877034567568863
Merged-chr3-89394211-2	chr3	89394122	89394322	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NR_040404)	promoter-TSS (NR_040404)	-68.0	NR_040404	545539.0	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	-	predicted gene 15417	ncRNA	5.31615613965998	5.27025530310572	5.40122349286044	4.90907990668439	5.33648677877826	5.33757138554669	5.03634816265521	5.19177261551464	0.0306472838959243	0.922315911155683	0.971233012399774
Merged-chr15-88539042-3	chr15	88538961	88539161	+	941.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61241.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	3.49696821218704	3.38118988822278	3.4974033077208	3.71556111433258	4.13283541547916	3.41642327087139	3.7546652155164	4.03377535207458	0.982347082630636	0.0607025541643888	0.260319879998014
Merged-chr16-92411583-2	chr16	92411492	92411692	+	692.166626	f0_balb.idr|f1_balb.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-11514.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	3.3372169407375	3.16396910428656	3.23191266313454	3.3754682261853	3.1469944912314	2.79849382430371	3.04466296415152	3.17385512356349	-0.908334288125305	0.127922753140512	0.398030688298095
Merged-chr6-125622639-3	chr6	125622532	125622732	+	815.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 18 of 51)	intron (NM_011708, intron 18 of 51)	-67787.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	3.42930349156185	3.40089282709634	3.5862881878604	3.32157977116657	3.78474965199366	3.42690136699716	3.24078123951595	3.18511375237605	0.0372680290046267	0.946184014331451	0.980814540550536
Merged-chr13-10542912-1	chr13	10542812	10543012	+	612.0	f0_balb.idr	Intergenic	Intergenic	-182109.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	3.14132881545172	3.17682703960296	3.08225219627952	3.23968444164382	2.83056315355762	3.12898421045098	3.23971636717595	3.08073069087338	-0.374893754563475	0.519266545638945	0.779947567224373
Merged-chr3-153636644-4	chr3	153636555	153636755	+	864.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	88478.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	4.2272080494219	4.29686753149241	4.17837155950943	4.45033199502892	4.1634136517861	4.35574590017702	4.50814682367784	4.86074250032616	0.438370921875033	0.284634819834933	0.5964138879162
Merged-chr4-133592798-2	chr4	133592687	133592887	+	669.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8414.0	NM_133884	100210.0	Mm.274001	NM_133884	ENSMUSG00000028848	Gpn2	AI838661|Atpbd1b|R74630	GPN-loop GTPase 2	protein-coding	3.03874161905816	3.00100302164592	3.10122228282043	3.1039565620205	3.25059229193289	3.21111998535525	3.30958183656366	3.09969638417438	0.607764756902135	0.26678453466187	0.57842963999018
Merged-chr7-45872822-4	chr7	45872719	45872919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133950)	promoter-TSS (NM_133950)	-21.0	NM_133950	68137.0	Mm.298433	NM_133950	ENSMUSG00000002778	Kdelr1	8030486F04Rik|AW215843|Erd2.1	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1	protein-coding	5.27947695165565	5.43000080641534	5.39899990454178	5.04620307169626	5.51103508310139	5.06499639147868	5.60220553815702	5.36662334119334	0.224862977763995	0.461538704611805	0.743302830494533
Merged-chr9-61706167-1	chr9	61706067	61706267	+	1000.0	f0_balb.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	208343.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	4.18220030130129	4.34771430569103	3.8354993434636	4.13718661806867	4.25079781757274	3.83630216999276	4.16414468858262	3.94233955135342	-0.18820999247882	0.669160702437543	0.863397557169305
Merged-chr8-126591269-1	chr8	126591169	126591369	+	1000.0	f0_balb.idr	exon (NM_001164598, exon 2 of 2)	exon (NM_001164598, exon 2 of 2)	2167.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.148977717674	5.26604869933757	5.64384455425266	5.16145443426662	5.09967797110186	5.25746285002767	5.22093227569584	5.33322471742586	-0.155105709818037	0.611964050826404	0.832680684364583
Merged-chr10-80165151-4	chr10	80165004	80165204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-2735.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	6.45926914650169	6.7193925427074	6.42496328566919	6.64124297277891	6.64037530544225	6.65422078996007	6.42741982042382	6.69376123239953	0.0475319089862249	0.823269735433821	0.932247237471869
Merged-chr15-79768473-4	chr15	79768372	79768572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017470, intron 1 of 3)	intron (NM_017470, intron 1 of 3)	5995.0	NM_017470	54152.0	Mm.288159	NM_017470	ENSMUSG00000022420	Dnal4	D15Ertd424e|Dnalc4	dynein, axonemal, light chain 4	protein-coding	6.04926513028843	5.68592398237361	6.19872286156056	5.93524788855485	5.60437898790809	5.4722773321572	5.65847002407959	5.87763865713168	-0.511247330212138	0.0578168635339652	0.252444272450258
Merged-chr3-88592895-4	chr3	88592832	88593032	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13324.0	NM_025448	66256.0	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|SSR-beta|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	4.43053182374016	4.37573376423003	4.39111523876513	4.06509282925076	4.25654809953987	4.38991809354053	4.05160944315711	4.30411317580532	-0.13219730175149	0.742872892417981	0.898691548174051
Merged-chr17-47873657-4	chr17	47873512	47873712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028767, intron 13 of 16)	intron (NM_028767, intron 13 of 16)	-38921.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	6.47523931430285	6.73195788333087	6.17756176942256	6.27399955961767	6.44222426622211	6.56635987055365	6.30338144585063	6.43807701507733	0.016324865768275	0.944635029808115	0.980106371692172
Merged-chr17-27954797-3	chr17	27954711	27954911	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	45505.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	4.50127045115208	4.40477156511533	5.00768459710879	4.69012939559325	3.89916924921696	4.16619812415425	4.1771153612985	3.79488678929154	-1.62022728792926	0.000185963499508428	0.00342298834536085
Merged-chr11-111064823-3	chr11	111064724	111064924	+	834.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1340.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	3.61162186555896	3.61131475364766	3.24678404821213	3.51650682604685	3.62181836837538	3.78250873635595	3.79185306933956	3.61009045320454	0.611920578616794	0.210115940131203	0.514583471300609
Merged-chr14-40931308-4	chr14	40931197	40931397	+	979.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	16912.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	5.15189034959348	4.56579422104995	5.18233887390796	5.2841235928133	5.02725317035774	4.36498655049731	5.12708009318897	4.92047302596195	-0.356879825084723	0.355610996601459	0.66228930969139
Merged-chr2-57238360-4	chr2	57238266	57238466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010274)	promoter-TSS (NM_010274)	-16.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	8.0178918440445	7.76493987524699	7.99868386307158	8.27414084807073	8.19669417916091	8.0607880148067	8.44473478517906	8.11170654154878	0.228441159457377	0.221065905231487	0.529129399033965
Merged-chr7-140954867-4	chr7	140954760	140954960	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030694)	TTS (NM_030694)	1101.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	5.39000449527747	4.75896159787976	5.24885805227377	4.52107951551358	5.26133254667507	5.08568980402568	5.68990506659475	5.18360971774578	0.585309964183988	0.115818731643381	0.376560001979254
Merged-chr5-114813974-4	chr5	114813890	114814090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027817)	promoter-TSS (NR_027817)	-14.0	NR_027817	66236.0	Mm.268546	NR_027817	ENSMUSG00000072694	1500011B03Rik	AI415201|AV141149|AW556386	RIKEN cDNA 1500011B03 gene	ncRNA	6.22222515660413	6.39425125157299	5.81746243468992	5.82256325523896	6.4655488213363	6.56077460519126	6.02763816400462	6.39827363907587	0.452529311271985	0.0887064102839902	0.325080243917219
Merged-chr2-80315510-4	chr2	80315415	80315615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024181)	promoter-TSS (NM_024181)	49.0	NM_024181	66861.0	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	7.7344309953532	8.01902549176859	7.75166653392546	7.65363650048611	7.60345568618669	7.95253896859232	7.84850869392294	7.43331464137841	-0.0953781328674877	0.623423132541663	0.8389509982641
Merged-chr12-79007226-1	chr12	79007126	79007326	+	982.0	f0_balb.idr	promoter-TSS (NM_178745)	promoter-TSS (NM_178745)	51.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	4.68213252997463	4.62983380044797	4.6464116461302	4.23682235381591	4.71259144173526	4.38860478443205	4.42622911453075	4.39943001811652	-0.103979247711248	0.788434140891741	0.91812687233996
Merged-chr11-55446788-4	chr11	55446701	55446901	+	882.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 3 of 3)	intron (NM_009720, intron 3 of 3)	14407.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	4.44165659142394	4.33141735627024	4.03236751194269	4.5883735395682	4.19988311179088	4.81871483519927	4.46493554132775	5.20834051165659	0.770667964303276	0.0844212825961656	0.316131232844722
Merged-chr14-55114895-4	chr14	55114783	55114983	+	844.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177049, intron 2 of 5)	CpG	2052.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	3.83753028302552	4.07181827068254	3.78670668135986	3.95829376366106	3.80781529583115	3.67443617673653	3.82233087164154	3.8358730593431	-0.389722043219563	0.383073730535083	0.684957924682392
Merged-chr6-31373218-4	chr6	31373125	31373325	+	927.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040300, intron 2 of 2)	intron (NR_040300, intron 2 of 2)	25548.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	4.82327199025036	4.7754869658405	5.06429607829082	5.28704002638944	5.00314566595469	4.66155251567364	4.64218633064275	4.96350871332482	-0.366407497754126	0.30046437530325	0.612432455247845
Merged-chr4-119733660-4	chr4	119733547	119733747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-74702.0	NM_008191	14916.0	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	8.42389449015124	8.29201780748276	8.22968973728933	8.26530140371406	8.46890400860807	8.67842998538486	8.7733581912204	8.46546267788541	0.376111767584925	0.0182679698987776	0.120531686079448
Merged-chr19-53467529-1	chr19	53467429	53467629	+	783.0	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2733.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	3.02930975271129	2.76200533707859	3.13319762095604	3.2791973909102	2.65890339628261	2.60977577455664	2.64986707840942	2.50497242144031	-2.37559867440265	0.00161319418996844	0.0197838644465478
Merged-chr16-91695360-4	chr16	91695264	91695464	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026994, intron 7 of 11)	intron (NM_026994, intron 7 of 11)	6466.0	NR_040389	100038392.0	Mm.440384	NR_040389	ENSMUSG00000085169	Gm10785	-	predicted gene 10785	ncRNA	4.10406096228468	4.03381568871885	3.71949226359478	3.33162343839748	4.01701077084875	4.05017394333223	3.81097744090294	3.60058995883953	0.15998427418778	0.75824278127376	0.905051949898294
Merged-chr3-40531029-4	chr3	40530927	40531127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8115.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	5.27677740997684	5.46825318813799	5.68755771640209	5.43323001039048	6.25975837565365	6.50529067576215	6.26618348617448	6.15316082487545	1.32018534000645	1.51858105557943e-07	6.28071359413643e-06
Merged-chr17-32320819-4	chr17	32320698	32320898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_017476)	TTS (NM_017476)	440.0	NM_001357760	56399.0	Mm.328945	NM_019774	ENSMUSG00000024045	Akap8	1200016A02Rik|AA673585|AKAP-8|AKAP95|AU015639	A kinase (PRKA) anchor protein 8	protein-coding	5.54164180496102	5.55472338082563	6.04730777086087	5.33419092365156	5.42022011746583	5.41752149462093	5.48752912605244	5.45496046575336	-0.321303265917549	0.284701847512258	0.596479449110349
Merged-chr13-58552161-4	chr13	58552058	58552258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58719.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	7.08419943744863	7.41788568569359	6.95596543889167	7.05081453553938	7.63844338311042	7.3686479445316	7.19976035938596	7.32540355423639	0.35289373869811	0.0868178012215987	0.321340220357285
Merged-chr10-78015631-4	chr10	78015543	78015743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5836.0	NM_001358793	18641.0	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver, B-type	protein-coding	6.34692674193119	6.90403553025301	6.13406514371505	6.23998956025486	6.07802378818636	6.26866695062756	5.99267346626385	6.46279790712991	-0.348759164079032	0.202018623360615	0.504557774233929
Merged-chr4-88641147-4	chr4	88641051	88641251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3308.0	NM_177347	230396.0	Mm.246592	NM_177347	ENSMUSG00000063376	Ifna13	-	interferon alpha 13	protein-coding	5.55791427610397	5.55980144226157	5.94395931133398	5.57038362963925	5.55063156989795	5.49174498709205	5.76021104124868	6.14877420599046	0.164576609285925	0.57251926272788	0.811251013052168
Merged-chr11-6389759-4	chr11	6389678	6389878	+	831.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5347.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	3.88956961684939	3.55152745725853	3.79155511233288	3.50239622861698	3.86703672363358	3.85945071860752	3.72412096385496	4.06428498647681	0.602063724483405	0.195512490928405	0.49635687137214
Merged-chr4-3954143-3	chr4	3954030	3954230	+	937.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14706.0	NR_104356	66433.0	Mm.27406	NM_181391	ENSMUSG00000042198	Chchd7	1810049H20Rik	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding	3.57988547667643	3.64551081324616	4.21655574775588	3.34861730937035	3.69570365187094	3.75776949174033	3.78018096470736	3.69080675027679	0.00266133131315398	0.995932667703099	0.998543856884531
Merged-chr4-41469314-4	chr4	41469210	41469410	+	838.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025539, intron 1 of 2)	intron (NM_025539, intron 1 of 2)	4162.0	NM_025539	66401.0	Mm.28574	NM_025539	ENSMUSG00000028443	Nudt2	2310051L06Rik|AA939917|APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding	4.44521685109323	4.21992117928268	4.22453054264637	4.88937211828626	4.16116787929803	4.35168056981998	4.42544419384259	4.26935707006281	-0.460108464122242	0.277597997915811	0.589700641340894
Merged-chr9-108507963-4	chr9	108507880	108508080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133794)	promoter-TSS (NM_133794)	-25.0	NM_133794	97541.0	Mm.272427	NM_133794	ENSMUSG00000032604	Qars	1110018N24Rik|1200016L19Rik|C80286|GLNRS	glutaminyl-tRNA synthetase	protein-coding	7.46328706674568	7.64781076117689	7.32401602433675	7.47524950456733	7.70425707296933	7.68799744151403	7.35961181359809	7.3606251259732	0.0779043446777438	0.681251006615586	0.869243800302784
Merged-chr12-119377062-4	chr12	119376913	119377113	+	988.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66397.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	4.48456880968456	5.21670422753514	4.62662492036603	4.61865241432102	5.3055265966621	5.3957077667941	5.01946895415488	4.71017058783709	0.717208608863215	0.0590206363361255	0.255895101039719
Merged-chr10-7052891-4	chr10	7052787	7052987	+	949.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29702.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	5.66701914959085	5.09558117898732	6.05337701364207	6.05061484192715	4.82127160505051	5.05459586739452	5.40578888482446	5.14221627911834	-1.16311333810053	0.00101121158803376	0.0135703298689018
Merged-chr7-35742339-4	chr7	35742211	35742411	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	12143.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	4.84011339281037	5.56747519098387	5.54070145013467	5.70182852145102	3.39889744525565	3.97194439389137	3.74485310235572	3.83108204376417	-4.93336246800256	3.2801100600206e-15	5.4677975166793e-13
Merged-chr9-108692679-6	chr9	108692688	108692888	+	962.305542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008924, intron 1 of 10)	CpG	645.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	4.03496571367656	4.08725655485323	3.93035146872408	4.08864665430625	4.11172383002409	4.47632454118366	4.20444632260989	4.26366147105349	0.560497304003517	0.166277279483527	0.45739103711385
Merged-chr2-131426656-4	chr2	131426564	131426764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65198.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	5.29133308749602	5.50269117160384	4.74583293082877	5.21970312042838	5.37999804829268	5.27602795531728	5.29503942618907	5.16407436332406	0.113395262483377	0.722451042831312	0.88918461475172
Merged-chr13-60737306-2	chr13	60737209	60737409	+	894.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 18 of 26)	intron (NM_134062, intron 18 of 26)	49055.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	3.29250716943739	3.47125839343691	3.91881049387876	3.1608205277216	3.37277058846211	3.4081920201778	3.08388333543575	3.46493310842022	-0.504260616668038	0.388100226758055	0.688846544177653
Merged-chr11-29718704-4	chr11	29718575	29718775	+	908.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024226, exon 1 of 7)	5' UTR (NM_024226, exon 1 of 7)	112.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	4.29453731288518	4.02341160685874	4.12617571043747	4.55709095882636	5.18423189736045	4.76058123362528	5.37795011169707	5.12855371230453	1.75060359355791	1.70616151850754e-05	0.000443870141541843
Merged-chr12-41487191-3	chr12	41487076	41487276	+	925.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	-1119.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	3.81778419769474	3.71200954545512	3.8183442568314	3.91647294493427	3.54123070558845	3.88796585105783	3.47423882164307	3.81607919902692	-0.416331654606238	0.380991217921075	0.683305836156047
Merged-chr3-60516434-4	chr3	60516338	60516538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	15259.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.87020898359773	5.10203988791027	4.38744845726808	5.05056927847844	5.02757286694511	5.00811976184178	4.88371833339329	5.03911104913055	0.188898893334704	0.591000856213881	0.821411686140442
Merged-chr6-86418872-3	chr6	86418776	86418976	+	788.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164078, intron 3 of 11)	intron (NM_001164078, intron 3 of 11)	14657.0	NM_001164078	21841.0	Mm.333219	NM_011585	ENSMUSG00000071337	Tia1	2310050N03Rik|AI256674|TIA-1|mTIA-1	cytotoxic granule-associated RNA binding protein 1	protein-coding	3.76616052644333	3.42884847284185	3.61390783373102	3.4743298464338	3.30525469038556	3.98196506485187	3.42830775151765	3.81145911402267	0.258233591647647	0.624898997198021	0.839659374707287
Merged-chr5-122779740-4	chr5	122779635	122779835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145358)	promoter-TSS (NM_145358)	-325.0	NM_145358	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	7.77359151990672	8.19305383369654	7.62648343224077	7.43146295421064	7.92184808245402	7.99062477040891	7.68967670274317	7.35946345120539	-0.0257369925003925	0.91152364451799	0.96695373445261
Merged-chr15-41765893-4	chr15	41765745	41765945	+	909.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 3 of 17)	L1MA4|LINE|L1	-23150.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	4.70939555310109	4.49992127073262	4.81128144122743	4.48595132633472	4.19952066601493	4.27331856184793	4.72166182279499	4.29665263176451	-0.545289650727593	0.163161383867629	0.452710867853602
Merged-chr16-16302897-4	chr16	16302814	16303014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038046)	promoter-TSS (NR_038046)	-51.0	NR_038046	70120.0	Mm.37486	NM_198246	ENSMUSG00000022792	Yars2	2210023C10Rik|tyrRS	tyrosyl-tRNA synthetase 2 (mitochondrial)	protein-coding	7.25516994773025	6.94988262793855	7.14707032481207	7.03468828040139	7.15169140328797	7.07229352579857	7.37683515315167	7.09551388392496	0.116178840441929	0.546307251603745	0.796350145922542
Merged-chr15-6386705-4	chr15	6386603	6386803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023118)	promoter-TSS (NM_023118)	-45.0	NM_023118	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	7.02241655157482	7.01907401088752	7.23358832524931	7.025987560832	6.68949091444241	6.97725123253374	6.75129093401947	6.5589872159768	-0.45669498732467	0.0239707582045148	0.144374225608323
Merged-chr19-6291324-4	chr19	6291254	6291454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	14458.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	6.98631266006751	7.35689137468292	7.1954516652652	6.03061889117021	6.60476443233017	6.60553736426239	6.68892721786354	6.17714269939218	-0.62893214939001	0.0431090901208594	0.211266566408196
Merged-chr3-88621808-4	chr3	88621711	88621911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	417.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	6.39360024070378	6.91800445149778	6.60923818186165	5.51289368605857	6.6986541835804	7.13887029509725	6.4142483937639	5.83694408894512	0.206523057709204	0.708307182087438	0.882782597289519
Merged-chr5-20969177-4	chr5	20969081	20969281	+	960.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17359.0	NM_001080977	242860.0	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	5.08425457370987	5.02512412301352	4.98272035250003	5.51840195378346	5.09440061200817	5.08515996234519	4.95884275676584	4.78844707340396	-0.388654137182666	0.248428438051551	0.559531936590555
Merged-chr5-5358119-4	chr5	5357985	5358185	+	936.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	22166.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	4.22259895203619	4.13586602237879	4.4749063401701	4.22757195035795	4.26233060932406	4.25189976187278	4.37658645290051	4.39392008300364	0.134675803825506	0.7268529380484	0.891273682846738
Merged-chr1-154058035-4	chr1	154057914	154058114	+	766.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143173.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	3.81489498671015	3.70307654912999	3.60971143436816	3.38187790144829	4.01707942118509	3.88744498141149	3.41923043857628	3.55087794078952	0.363931053536359	0.479039556175233	0.754876095045917
Merged-chr4-71252440-4	chr4	71252323	71252523	+	798.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-717495.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	3.96020101712123	3.59658034367319	4.25895873553039	4.92542565724004	4.03862413886292	3.90708611975578	4.64890244875925	4.29987339706222	-0.0821237324101271	0.884080862810023	0.956390337098447
Merged-chr5-26904422-6	chr5	26904327	26904527	+	748.305542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198886)	promoter-TSS (NM_001198886)	-351.0	NM_001198886	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	3.5508442852352	3.58297178674192	3.82083815753056	3.85465273562474	3.79814245585699	3.83793234263482	3.70479123227016	3.86622473715517	0.244009192780555	0.598624042404977	0.825987886019831
Merged-chr7-122464103-4	chr7	122464005	122464205	+	945.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 5 of 16)	Lx8b|LINE|L1	174980.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	4.73990173415013	5.05910167280088	4.84973031071682	4.68162891009853	4.86470010813895	4.47473291900797	4.47028865414443	4.84646378905128	-0.307349846797603	0.394641120285736	0.693682147756976
Merged-chr11-77446819-4	chr11	77446749	77446949	+	945.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 13 of 14)	intron (NM_177710, intron 13 of 14)	-17064.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	4.33036520987773	4.93257312698363	4.59218468846933	4.4844749353233	4.69856277790032	4.76407388708092	4.4479935086609	4.17564298523692	-0.126918872686518	0.751281518027231	0.90206756248478
Merged-chr13-59889913-3	chr13	59889842	59890042	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66795.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	3.29826916287662	3.37893704022665	3.36870818292649	3.3644567455768	4.01504877898892	4.0924599350308	4.10974620553845	3.87410211670342	2.02927326025188	2.14257069975634e-05	0.000541569743742744
Merged-chr11-36942156-4	chr11	36942053	36942253	+	994.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011856, intron 1 of 28)	intron (NM_011856, intron 1 of 28)	2088.0	NM_001290702	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	5.77912383333469	5.53050019050519	5.16941691153245	6.11694626240414	5.97569228575867	5.80213071983764	5.93042104772181	6.01827221292952	0.348721261052381	0.25872754781636	0.570489393947544
Merged-chr11-85686391-4	chr11	85686317	85686517	+	813.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	ORR1E|LTR|ERVL-MaLR	33327.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	4.09300598827997	4.55960503087231	4.27444081388093	4.43472719099666	4.0191577275384	4.06209935106934	3.86861787107704	3.99043962651623	-0.961251940084497	0.0225542827498795	0.13876664291241
Merged-chr13-52505873-4	chr13	52505785	52505985	+	907.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001024474, exon 2 of 2)	3' UTR (NM_001024474, exon 2 of 2)	24951.0	NM_001024474	68203.0	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	5.60147176866002	5.28824277624234	5.92163427832405	5.59429541115993	4.38109164101806	4.5550813546966	4.78229019383614	4.75907357135858	-1.94688866375897	2.02659770102997e-08	1.01656939930664e-06
Merged-chr15-98181515-4	chr15	98181404	98181604	+	941.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13698.0	NM_177716	239650.0	Mm.54140	NM_177716	ENSMUSG00000029875	Ccdc184	5630400A08|AI836003	coiled-coil domain containing 184	protein-coding	4.99437877042267	5.407896127239	4.88940424584059	5.24923424890843	4.91290737813099	4.53862069601105	4.97094006211685	4.68809087145702	-0.717456514717959	0.0383566292016849	0.196388038407908
Merged-chr12-80115473-8	chr12	80115428	80115628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2515.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	5.90124478248215	5.82408105315865	5.27583053556236	5.00142515878027	6.41584018866463	6.83686276262888	6.14606759042188	6.4469046759879	1.47212150110962	2.92711811754166e-06	9.23125124007524e-05
Merged-chr11-61104452-4	chr11	61104333	61104533	+	852.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER30|DNA|hAT-Charlie	-36402.0	NM_021349	57916.0	Mm.265915	NM_021349	ENSMUSG00000010142	Tnfrsf13b	1200009E08Rik|Taci	tumor necrosis factor receptor superfamily, member 13b	protein-coding	3.59779754814891	4.05562920915586	3.47239666747674	3.85072512342178	3.91547995635108	3.65366706771646	4.11303635637187	3.91454153954412	0.393268519344147	0.422330025205751	0.714627428645491
Merged-chr3-107274037-4	chr3	107273938	107274138	+	932.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4820.0	NM_026774	68576.0	Mm.290035	NM_026774	ENSMUSG00000087260	Lamtor5	1110003H18Rik|Hbxip|XIP	late endosomal/lysosomal adaptor, MAPK and MTOR activator 5	protein-coding	4.70607111973176	4.3104252824977	4.3983460529345	4.99172546645433	4.99459437053407	4.88078836131644	4.76021601710903	5.01490748933851	0.541477532909912	0.156793612048276	0.442893690014765
Merged-chr5-105748547-2	chr5	105748455	105748655	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122768, intron 2 of 2)	B1_Mur4|SINE|Alu	47745.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	3.1957841442386	3.35847242474065	3.41132347240491	3.00625496749339	3.19685781554512	2.89606238389128	3.06324654256915	3.35887432372866	-0.398129370392604	0.503778557570336	0.770586107991984
Merged-chr7-30594731-4	chr7	30594620	30594820	+	870.1124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153655, intron 1 of 3)	intron (NR_153655, intron 1 of 3)	-1778.0	NM_021397	58206.0	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	4.6325740354846	5.68863599270095	4.87323841557518	4.15626166860827	5.07651634692315	5.01288120319492	4.65448658257576	4.7555700717182	-0.162293388941334	0.725633253304116	0.890921883682774
Merged-chr11-78600720-4	chr11	78600607	78600807	+	866.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008702, intron 3 of 10)	intron (NM_008702, intron 3 of 10)	-49972.0	NM_133706	69071.0	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	4.47487817049314	4.13545644271126	4.39881734826957	4.0184778947658	4.15699526087683	4.35666432513632	4.11805934070335	4.18094807774581	-0.12720866175555	0.757789657220967	0.904860090778916
Merged-chr6-146577681-5	chr6	146577577	146577777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347513)	promoter-TSS (NM_001347513)	158.0	NM_001362108	71177.0	Mm.271774	NM_138757	ENSMUSG00000040250	Ints13	4933424B01Rik|Asun|Spata30	integrator complex subunit 13	protein-coding	7.27916917387593	7.4002626417162	7.7135940322088	7.23586704870554	7.15512977275238	7.56091091551242	7.29671353183546	7.39846176218482	-0.078869667627376	0.697643827621393	0.877977201438932
Merged-chr10-25410962-4	chr10	25410854	25411054	+	798.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	2586.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	4.19321844223699	3.81478572704111	3.92705654343763	3.42772268289835	4.16705635902776	4.05057050868424	3.91017564582364	3.76746710835791	0.355875260722173	0.468618208250602	0.747803507343786
Merged-chr10-67004283-4	chr10	67004185	67004385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110511)	promoter-TSS (NR_110511)	-790.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	6.53947867473974	6.47695742646763	6.83765570762861	6.89607414344495	6.75127842343136	6.50002951006678	6.85450910897157	6.51911429825843	-0.0577265866223888	0.798287969842431	0.921960367435453
Merged-chr10-111160356-4	chr10	111160243	111160443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-4459.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	5.42522793522597	6.1579814885714	5.73437515085641	5.66531263199325	5.33374378576814	5.12181978160298	5.07202054356228	5.16602022222897	-1.03099925872852	0.000933504724206117	0.0127266678345656
Merged-chr2-155563112-4	chr2	155563006	155563206	+	991.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008180)	TTS (NM_008180)	-6176.0	NR_040613	74945.0	Mm.401956	NR_040613	ENSMUSG00000086529	Acss2os	4930471I20Rik	acyl-CoA synthetase short-chain family member 2, opposite strand	ncRNA	4.864914372582	5.36901560825312	4.98024814448542	5.59366914583586	5.32703982725438	5.38924558832478	5.02811523156382	5.08331339706586	-0.0767691849711649	0.824019612765432	0.932476232435989
Merged-chr17-84791496-2	chr17	84791396	84791596	+	893.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028233)	promoter-TSS (NM_028233)	-710.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	3.30802381218108	3.19263610189682	3.11779472070933	3.12437548428839	3.3004690108781	3.59258250196942	3.2958872904662	3.75189255863421	1.09899776109213	0.0400709831619928	0.201955144833781
Merged-chr5-129908588-4	chr5	129908503	129908703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026916)	promoter-TSS (NM_026916)	63.0	NM_026916	69034.0	Mm.211372	NM_026916	ENSMUSG00000095789	Nupr1l	1810010E01Rik|4930579G22Rik|Nupr2	nuclear protein transcriptional regulator 1 like	protein-coding	6.90321256556525	7.02812080496413	7.37789101746267	6.72401414429086	7.11551562640322	7.17380240658005	7.13852371410087	7.12455150905462	0.164773440804115	0.441482962238092	0.72851318019698
Merged-chr8-70613969-4	chr8	70613843	70614043	+	764.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2901.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	3.96833068191809	4.03975607205493	4.06082965009139	3.48347766026224	3.88853515313511	4.18604518952747	3.63298821837896	3.91803449443095	0.0565221941263712	0.908070158251131	0.965960244231753
Merged-chr7-4082976-4	chr7	4082880	4083080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033568, intron 6 of 8)	intron (NR_033568, intron 6 of 8)	-19776.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	6.87811524987158	7.00969488036149	6.90620610672001	7.24304723073839	6.79260124266396	7.13472625972511	6.92311051405486	6.63592048020385	-0.209870231552262	0.328853408284863	0.640144325858488
Merged-chr15-79753202-4	chr15	79753092	79753292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045069, exon 4 of 4)	non-coding (NR_045069, exon 4 of 4)	10494.0	NR_045069	100504191.0	Mm.421420	NR_045069	ENSMUSG00000087543	Gm16576	-	predicted gene 16576	ncRNA	5.08459032190195	5.47518060264678	5.26204789251488	5.02162352293129	4.97306592343813	4.94166964895534	4.42491426543089	4.33445770331751	-1.00988855254137	0.00781317893523157	0.0660819106165679
Merged-chr1-131238640-3	chr1	131238543	131238743	+	778.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018750, intron 1 of 5)	intron (NM_018750, intron 1 of 5)	6535.0	NM_001313731	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	3.65464885543458	3.46991284835642	3.75330777010631	3.53149022076113	3.43797618991895	3.60804423702389	3.68937634680653	3.54697438692179	-0.0998875474023137	0.837067556615609	0.938145671742126
Merged-chr15-93275354-4	chr15	93275231	93275431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346785)	promoter-TSS (NM_001346785)	-152.0	NM_001346785	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	9.19997933784093	9.09048797818001	9.32032963184867	9.16745813828965	9.30333044564449	9.41623751653617	9.52075682003426	9.2050790138876	0.210175907777171	0.153560755044319	0.438299020903824
Merged-chr3-129422005-4	chr3	129421865	129422065	+	937.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11708.0	NR_033594	435755.0	Mm.430561	NR_033594	ENSMUSG00000105712	Pou5f1-rs4	EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d	POU domain, class 5, transcription factor 1, related sequence 4	pseudo	4.01421040776908	4.22340681501764	4.16207045928415	4.47192674667322	4.33333698141639	3.96985628672543	4.27476238887338	4.11238407527828	-0.144118102793023	0.733155898146844	0.894395661716869
Merged-chr19-46303871-2	chr19	46303770	46303970	+	692.75	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001177369)	promoter-TSS (NM_001177369)	-867.0	NM_001177369	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	3.97439455285149	4.39879911269645	4.02827507600222	4.25885387655426	4.24264025007101	4.3933933726413	4.06259451576045	4.38779372717295	0.222033851313102	0.589729286734443	0.820539533210917
Merged-chr10-61469055-3	chr10	61468952	61469152	+	675.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6781.0	NM_153542	216011.0	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	3.73774392398715	3.58138370218291	3.45877426082233	3.25145117861093	3.27455032197003	3.20439819641129	3.49614095506746	3.0954361855896	-0.853356714043568	0.130986941547883	0.402883048674997
Merged-chr11-32586144-3	chr11	32586051	32586251	+	952.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 4 of 18)	intron (NM_009288, intron 4 of 18)	52885.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	4.45475931451547	4.15350999029885	4.17915068962092	4.63697979049053	3.70071506667726	3.82710123924826	3.69228849733375	3.98687991328324	-1.58143919489184	0.00052915373034464	0.00807907193740908
Merged-chr8-8653668-3	chr8	8653587	8653787	+	894.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010111, intron 1 of 4)	intron (NM_010111, intron 1 of 4)	7086.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	3.7314931060322	3.21240937081534	3.54292453428514	3.8321027940322	3.45480171324682	3.23590406509126	3.24760278010565	3.19199084703945	-1.08578103760679	0.0566999966032161	0.249403600186647
Merged-chr13-51853698-6	chr13	51853683	51853883	+	955.255554	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7108.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	3.68498168843261	3.89400239717537	3.50579937659065	3.52642461940699	3.76611565947309	4.01557323157318	3.61435502416029	4.25981571849513	0.794561135146902	0.104076021532182	0.354556376271467
Merged-chr11-115000277-4	chr11	115000142	115000342	+	977.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134158, intron 2 of 3)	intron (NM_134158, intron 2 of 3)	1638.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	5.23043348491077	5.05033279561061	6.2140694746763	5.1799975623238	5.2378522704129	4.94736166407993	5.54845534155203	5.5730710077623	-0.271843550996794	0.48785833151293	0.761085086984588
Merged-chr12-80235474-3	chr12	80235378	80235578	+	850.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	24893.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	4.00036708815211	4.24694068183229	4.24072640773935	4.19732970562743	4.79184546936667	4.07082865555896	4.03562975650008	3.83086264012209	0.197284110262211	0.678841871569639	0.868177475500492
Merged-chr4-117836579-5	chr4	117836485	117836685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008135, intron 1 of 13)	CpG	1327.0	NM_008135	14664.0	Mm.244549	NM_008135	ENSMUSG00000028542	Slc6a9	Glyt-1|Glyt1	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	protein-coding	5.76960561159205	5.71953418158339	5.42222555266237	5.66321885223274	5.52093648732657	5.82225861005635	5.36439439112589	5.94094697899653	0.0394833723285738	0.888987798019676	0.958420116257639
Merged-chr10-68724568-4	chr10	68724503	68724703	+	992.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	857.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	4.95100615070258	4.54126841675313	5.35067558552183	5.1255925210321	5.43187163379392	5.40590430207498	5.57907210105251	5.48198008637522	0.813851654648779	0.0126286664982335	0.0931691389591377
Merged-chr1-66862882-4	chr1	66862793	66862993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007381, intron 1 of 10)	CpG	416.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	6.91672377355231	6.99911319427956	7.12326219603572	7.22589437863091	6.90317112732782	6.71607288287314	6.88294587010531	6.71489871971378	-0.3754050797277	0.0594297877506541	0.256949089613303
Merged-chr7-25129707-4	chr7	25129624	25129824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 1 of 13)	intron (NM_001163556, intron 1 of 13)	2736.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	6.94073653112251	7.13888706210387	7.21974254664529	6.97739112737982	7.24458779575275	6.97711314676012	7.44554827751301	7.30853100425523	0.255814478774634	0.195799198505159	0.496672200168623
Merged-chr16-13372150-4	chr16	13372075	13372275	+	991.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153588, intron 1 of 14)	intron (NM_153588, intron 1 of 14)	13754.0	NM_153588	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	5.35580598653613	5.15999186180229	5.4103505230942	5.40696049651341	5.00079635843642	5.07328389768157	5.15383576928791	4.9700137632976	-0.549148446431431	0.0651334297239486	0.271536086844931
Merged-chr3-127894143-4	chr3	127894053	127894253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027482, intron 1 of 1)	intron (NM_027482, intron 1 of 1)	2170.0	NM_027482	70617.0	Mm.317049	NM_027482	ENSMUSG00000050549	Fam241a	2700063A17Rik|5730508B09Rik|C80506	family with sequence similarity 241, member A	protein-coding	6.06670145693532	5.76099324000761	6.14409207590929	6.14083844632383	5.88889110052268	5.45611795939219	5.70225228883326	5.67477038175894	-0.546919542366012	0.0394074310104812	0.199903435634688
Merged-chr9-45417451-4	chr9	45417344	45417544	+	988.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040732, intron 4 of 4)	intron (NR_040732, intron 4 of 4)	11367.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	5.18142005965801	5.25093768799821	5.11803220424008	4.60016920369956	5.27009718885036	5.25954497819401	5.40913509812934	4.97555563642893	0.36728330231782	0.280014159634856	0.592113362937987
Merged-chr2-181592674-7	chr2	181592548	181592748	+	918.514282	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164597)	promoter-TSS (NM_001164597)	-187.0	NM_001164597	269401.0	Mm.386888	NM_001164597	ENSMUSG00000000823	Zfp512b	Gm632|Znf512b	zinc finger protein 512B	protein-coding	3.12990902581062	3.33315507995753	3.13027899688864	2.84753009475837	3.25138878371875	3.59229554596669	3.35532922932573	3.47205025051792	1.14079508710467	0.0427589124552524	0.210206622816909
Merged-chr14-106687597-2	chr14	106687489	106687689	+	644.466675	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-201069.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	3.82400899992281	3.74278760953173	3.7756678895506	4.77490369987516	3.07771474131804	3.19434691397343	3.21993680960807	3.22888878311665	-3.40807339228294	6.02965624088941e-07	2.19644268971478e-05
Merged-chr10-117840739-4	chr10	117840650	117840850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	5224.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	5.44120330084904	5.65299191374788	5.87149947070038	5.77612096054856	5.6501139750346	5.67659160065765	5.60847441874654	5.34495659375805	-0.204913251114243	0.453594430490963	0.737598830499322
Merged-chr12-98261276-3	chr12	98261163	98261363	+	827.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1804.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	3.3644269285828	3.14423568364247	3.25450639011972	3.28442381069363	3.2509939863602	3.36600169839423	3.18434595625479	3.25282340515168	-0.00178807323970663	0.997308214844713	0.998908860902246
Merged-chr11-100893624-4	chr11	100893512	100893712	+	977.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_213660, intron 20 of 23)	intron (NM_213660, intron 20 of 23)	33128.0	NM_001164062	20850.0	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	4.37449245953547	4.63124931890329	4.84582988595109	4.70606344336834	5.17054510823403	4.98243540279995	4.85763109013175	4.87791327876494	0.673383632942936	0.0486107624772111	0.22760593753226
Merged-chr6-124790274-3	chr6	124790176	124790376	+	794.383362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-10549.0	NM_001302555	16977.0	Mm.3207	NM_013588	ENSMUSG00000030125	Lrrc23	4921537K05Rik|B7|Lrpb7	leucine rich repeat containing 23	protein-coding	4.25863432868571	3.93098013522128	3.68900530149769	3.87614821186263	3.87002047057366	3.42267521594148	3.67460243589123	3.57160059812068	-0.87434540925549	0.0835659511322874	0.314301921439512
Merged-chr12-85914554-3	chr12	85914464	85914664	+	934.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 19 of 32)	intron (NM_001347395, intron 19 of 32)	89614.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	3.97459580492324	3.59829874285836	3.93082841902126	4.04777535362046	3.76153025923168	3.48887214798633	3.66775204543389	3.73369015424954	-0.6910556752162	0.15074736915286	0.433642377502885
Merged-chr6-129171841-4	chr6	129171756	129171956	+	930.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8759.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	4.06577423254038	4.54891566471081	3.94595244370331	4.17928125065394	5.30640749795789	4.83479000553558	4.48480047005549	4.41729024667715	1.34891690247509	0.00226898927441033	0.0257870649150971
Merged-chr1-162547211-4	chr1	162547128	162547328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144877, intron 1 of 7)	intron (NM_144877, intron 1 of 7)	1117.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	5.68500234304837	5.47053244094643	6.31800740630507	6.18505983920451	5.87627224366989	5.94249972601649	6.05075655121652	5.99503861728672	-0.00593933809868565	0.983729041521607	0.994134217089281
Merged-chr12-110978672-1	chr12	110978572	110978772	+	1000.0	f0_c57.idr	promoter-TSS (NM_001361917)	promoter-TSS (NM_001361917)	-54.0	NM_001361917	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	5.1458945297548	4.98754526081016	4.81428120295794	4.44068802926689	4.89700266911054	4.87196175036756	4.9337958350783	4.98803006203712	0.13802303623642	0.698595756776391	0.878446584665701
Merged-chr1-172463528-4	chr1	172463427	172463627	+	961.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11833.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	4.91213057667532	4.54578361706582	5.36779037618903	5.09846310139255	5.19330539545421	5.33489467339178	5.2566033462732	5.51773509398708	0.578636466291851	0.0873507809262784	0.322434976502057
Merged-chr3-103809474-4	chr3	103809365	103809565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163552)	promoter-TSS (NM_001163552)	-52.0	NM_001163552	67489.0	Mm.197568	NM_026193	ENSMUSG00000032952	Ap4b1	1810038H16Rik|AV004952|Ap4b4	adaptor-related protein complex AP-4, beta 1	protein-coding	7.60553327346309	7.37124352661621	7.55448066641855	7.42601078885279	7.61453421090368	7.61998441189439	7.30483147414879	7.74657680800599	0.125222419354771	0.496762436887588	0.76667505410281
Merged-chr13-41604362-4	chr13	41604241	41604441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1875.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	5.98283395579411	6.36353260792004	6.18394868915974	5.87089873162131	5.96546691615516	5.69788959028726	5.81682219020151	5.76777087364837	-0.446825133878774	0.0878046585724409	0.323276895434859
Merged-chr9-56419074-4	chr9	56418995	56419195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025812, intron 1 of 9)	intron (NM_025812, intron 1 of 9)	476.0	NM_025812	66867.0	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	6.0118416934699	6.25222111763068	5.43806618012108	5.64642618104131	6.30094844961911	5.74305460418108	6.12042515387719	5.85222526316295	0.25338286465448	0.399771253965797	0.697861775510926
Merged-chr7-143036633-4	chr7	143036532	143036732	+	880.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 4 of 4)	Lx3_Mus|LINE|L1	-16118.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	4.06643003774547	4.02333054693372	3.96746612791817	3.3645254067486	4.27303619939408	4.3317965230328	4.38093175088107	3.96511083613298	0.983967223821963	0.0389356034876153	0.198231781755488
Merged-chr2-3657018-4	chr2	3656922	3657122	+	898.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-56436.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	4.51101528285517	4.32225711727412	4.511724225866	4.77167051383958	4.29023298130184	4.9209524533267	5.0413949539277	4.67195822865787	0.433538545870445	0.277599245414862	0.589700641340894
Merged-chr10-78169844-4	chr10	78169730	78169930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138601)	promoter-TSS (NM_138601)	-62.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	8.2475009326412	8.2918153636327	8.12203319578252	8.16193163214468	8.25659038735248	8.28044382073741	8.3196193356752	8.03797960474101	0.0284918359380986	0.856949756353747	0.946159157665131
Merged-chr5-24780419-4	chr5	24780326	24780526	+	905.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22583.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	3.81072600095497	3.93796491046801	3.56553513471883	3.57231858867943	4.34356169222532	4.52235309771798	4.21939009395006	3.80911296889788	1.40625267826397	0.00229181913549157	0.0259884330484554
Merged-chr14-120832013-4	chr14	120831904	120832104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79190.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	6.19996719832317	6.37597750878584	6.35682045616658	6.34928894030246	6.43675232914557	6.51475430975897	6.77778126964364	6.45757167931589	0.331390634486575	0.12947094514635	0.40038286503767
Merged-chr1-172148072-4	chr1	172147996	172148196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153555)	promoter-TSS (NM_153555)	81.0	NM_001357204	98193.0	Mm.159915	NM_153555	ENSMUSG00000026554	Dcaf8	AA408877|AA433120|AA792214|AU018973|C76055|D1Dau35e|D1Ucla4|H326|Wdr42a	DDB1 and CUL4 associated factor 8	protein-coding	8.02141781532327	8.2699978257822	7.78544542252589	8.0386917758771	8.0922857471422	8.28524464232804	8.40373221554115	7.85924995964431	0.169724569546628	0.377756510414589	0.680424390889998
Merged-chr13-113435341-4	chr13	113435283	113435483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	67461.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	6.59100791273096	6.5527888795199	6.86463088972968	6.44336906715626	6.57061628867443	6.22756637538993	6.28886631330338	5.97194285329468	-0.469241045771304	0.0563804402835284	0.248637412388315
Merged-chr7-16990252-3	chr7	16990174	16990374	+	827.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4314.0	NM_001101535	434130.0	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	-	coiled-coil domain containing 8	protein-coding	3.66759807110778	3.88877301050378	3.82877791501231	4.15276323275869	3.71742620991129	3.84205040459064	3.81307096556741	3.77528777227939	-0.374451426969342	0.420328498724655	0.713229765679466
Merged-chr12-112849541-2	chr12	112849441	112849641	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11375.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	3.09540853162691	3.1327439696105	2.68533706720679	2.83761987388208	3.19167577847397	3.20733141986335	3.08408019191037	3.20665869334386	0.917485251615676	0.126096568887119	0.394558979990163
Merged-chr2-84064613-4	chr2	84064527	84064727	+	801.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-123401.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	3.81983112466042	4.01256569117418	3.6225469859338	3.48943510744619	3.51644141434494	3.36914073332502	3.75718815401849	3.3221773590495	-0.770393164129752	0.145764067810715	0.425532793975017
Merged-chr3-15276094-4	chr3	15275989	15276189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	56213.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	5.44436347562893	5.67387637460253	5.44529997855341	5.81836359969409	6.48043492047854	6.44523525369079	6.36969169178063	5.88510076142751	1.08980369905112	7.31319496127833e-05	0.00155945447617984
Merged-chr10-127600401-4	chr10	127600295	127600495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	20753.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	7.01838604662282	6.91495563858721	7.20013731380611	7.19425757853805	6.83024376444443	6.62410700714761	6.87029866812402	6.84606036527913	-0.408044420963312	0.0400418077147374	0.2018995061119
Merged-chr13-9027456-4	chr13	9027357	9027557	+	885.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31445.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	4.54916595565752	4.85856277639962	4.50876995297	4.88860120663323	4.37577777321501	4.30484226249967	4.4027667594063	4.50590212991	-0.737455826974457	0.0472600298565071	0.223798926562193
Merged-chr16-46497313-5	chr16	46497217	46497417	+	782.549988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021497)	promoter-TSS (NM_021497)	-350.0	NM_021497	58998.0	Mm.40477	NM_021495	ENSMUSG00000022656	Nectin3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3	nectin cell adhesion molecule 3	protein-coding	3.16148947418834	3.46052297523112	3.57536289632209	3.38631940549108	3.12442926565678	3.00041175843355	2.88507071813805	3.16031047208015	-1.39415235411162	0.019779771122049	0.127113066873991
Merged-chr6-15841724-4	chr6	15841626	15841826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121065.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	6.93769562175788	6.53777287229738	6.79136630490911	7.1217398379596	6.92783998421635	6.76875286822458	6.94102503258185	6.63556619058906	-0.0678631603427672	0.761984793898692	0.906776947564005
Merged-chr1-163994809-4	chr1	163994703	163994903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201364)	promoter-TSS (NM_201364)	-7.0	NM_201364	381306.0	Mm.28152	NM_201364	ENSMUSG00000041406	BC055324	-	cDNA sequence BC055324	protein-coding	7.0134504871283	7.17891705181617	7.14826463088751	7.3852510810901	7.19300318503494	6.96911746277588	7.28373264088751	7.27431377251193	-0.0176076783502427	0.928459269688992	0.974013299295398
Merged-chr12-75308098-2	chr12	75307998	75308198	+	552.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023275)	promoter-TSS (NM_023275)	-215.0	NM_023275	80837.0	Mm.27467	NM_023275	ENSMUSG00000046768	Rhoj	1110005O19Rik|AW210585|Arhj|TC10L|TCL	ras homolog family member J	protein-coding	2.88829183308887	2.93122668882716	2.94664719233489	2.79491156543417	2.4578072026256	2.93674774306173	2.6197926833967	2.76301202411285	-0.915047060357839	0.17782192544904	0.473484469233026
Merged-chr13-56163046-4	chr13	56162946	56163146	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15839.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	4.71636479866772	4.70381481672729	5.16348994137766	5.23481455879518	4.74035712230135	4.2817061515031	4.48979104538945	4.31462739379474	-1.06892528234656	0.00658312064453558	0.0581004270746929
Merged-chr4-124657091-1	chr4	124656991	124657191	+	749.0	f0_balb.idr	promoter-TSS (NM_011141)	promoter-TSS (NM_011141)	-555.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	3.80409818343429	3.70494160341704	3.80463781354349	3.92973229728492	3.77736293838682	3.70184564850688	3.93010741144782	3.75114040834333	-0.082711323854806	0.854287227285473	0.945122797583896
Merged-chr13-40843595-3	chr13	40843459	40843659	+	797.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16209.0	NM_023887	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	3.22464021016534	3.37392728075712	3.40170106625039	3.29286721795685	3.47696648962013	3.56965822679466	3.38855484401618	3.34355391557855	0.43712081535473	0.388370636944603	0.688981838974675
Merged-chr7-49397930-3	chr7	49397837	49398037	+	732.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 3 of 37)	intron (NM_175272, intron 3 of 37)	151748.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	3.06739111493268	2.90652724976721	3.28632112545988	3.71623814301739	2.66566525794876	2.83930955971628	2.72420314803486	2.94158791616215	-2.25001691340318	0.0017768451645457	0.021342231179075
Merged-chr4-56947469-4	chr4	56947350	56947550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175518)	promoter-TSS (NM_175518)	-21.0	NM_175518	242474.0	Mm.296632	NM_175518	ENSMUSG00000055296	Tmem245	A630051L19Rik|AI957324|D730040F13Rik	transmembrane protein 245	protein-coding	7.27967517946657	7.31879830788595	7.35420477903603	7.57654980237193	7.21747655666088	7.32195288162034	7.6058938679955	7.37921736839412	-0.0169801759471438	0.929415385641448	0.974499274291793
Merged-chr17-24850414-4	chr17	24850289	24850489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024284)	promoter-TSS (NM_024284)	-87.0	NM_023480	68636.0	Mm.347964	NM_023480	ENSMUSG00000045316	Fahd1	1110025H10Rik|AV002085	fumarylacetoacetate hydrolase domain containing 1	protein-coding	8.30844339541506	8.31258436763637	8.11415428087148	8.23891168604197	8.17106731457716	8.32347705828115	8.11969078004234	8.30434604882351	-0.0209124605228521	0.893333531741109	0.96013087495735
Merged-chr1-135411164-4	chr1	135411075	135411275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357578, intron 5 of 24)	intron (NM_001357578, intron 5 of 24)	19316.0	NM_153774	226432.0	Mm.271642	NM_153774	ENSMUSG00000041879	Ipo9	0710008K06Rik|AI845704|C78347|Imp9|Ranbp9	importin 9	protein-coding	6.69636994196743	6.60610396843578	6.57111178615605	6.95175709405763	6.9643001641696	6.57033101462432	7.01406483432137	6.75169994539332	0.161458905028947	0.4675449096485	0.747026558181345
Merged-chr1-95598304-4	chr1	95598198	95598398	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009183, intron 4 of 4)	intron (NM_009183, intron 4 of 4)	69296.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	5.00869547507201	5.20880504125069	5.24190837644417	5.57500752249328	5.33542559716018	5.1119640196339	5.08952271007738	4.96930443850144	-0.28320672701445	0.381284263044383	0.683560179285592
Merged-chr7-122297847-4	chr7	122297746	122297946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	8721.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	5.26006943676216	5.04907980935484	5.1299207188258	5.51130935975238	5.50592152048659	4.82028646746756	5.58335012828508	5.51017214057157	0.234005442852966	0.484448439811042	0.758525197917074
Merged-chr19-11533592-4	chr19	11533479	11533679	+	985.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3270.0	NM_025658	66607.0	Mm.441056	NM_025658	ENSMUSG00000024678	Ms4a4d	2210417J23Rik	membrane-spanning 4-domains, subfamily A, member 4D	protein-coding	5.11973520371934	5.61505788902681	4.77591869960837	5.2867278173405	5.27340301945619	5.07994230339615	5.19196196295765	5.30420186677087	-0.0468990840182374	0.887467870723131	0.957799052224803
Merged-chr17-64375502-4	chr17	64375397	64375597	+	837.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43614.0	NM_001025309	224938.0	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja ring finger ubiquitin ligase 2	protein-coding	3.81265507025725	4.08401987578336	3.91861477579831	3.82921313409014	4.118855487155	3.98825588502738	4.25003066838333	3.75511933293649	0.358630195043717	0.414403378031483	0.709044594374843
Merged-chr15-6238399-4	chr15	6238289	6238489	+	829.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61400.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	3.83709423840611	3.64556634606225	4.02615586533688	3.69327647382735	4.14637956290071	3.79423871970009	3.91831797317799	3.72983403636033	0.334187451771105	0.468823662030974	0.747933343931938
Merged-chr11-121702378-4	chr11	121702285	121702485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144797)	promoter-TSS (NM_144797)	-42.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	8.15702115034556	8.30128962801206	7.73053420398843	7.98133171990787	8.11262814188382	8.24197064221388	8.22362654530196	7.83894936979717	0.0687813526880585	0.719952869406412	0.888028373825666
Merged-chr4-75463751-4	chr4	75463642	75463842	+	928.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-185450.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	4.72551265198343	4.37785491404492	4.61072127948116	5.011864077576	4.67828764005813	4.56898292133767	4.70391560301352	4.56684129055298	-0.189377751413633	0.612343579626735	0.832715671052909
Merged-chr13-67797741-2	chr13	67797645	67797845	+	765.833374	f0_c57.idr|f1_c57bl6.idr	intron (NR_045194, intron 2 of 2)	intron (NR_045194, intron 2 of 2)	-16071.0	NM_198322	212569.0	Mm.358842	NM_198322	ENSMUSG00000030446	Zfp273	6820416H06Rik|Rslcan1	zinc finger protein 273	protein-coding	2.94638650787383	2.793948804336	2.94668389534651	2.68950400478477	3.95759391372576	3.60183084836098	3.91771184831164	3.77096462173552	3.91523888412611	1.57953556524876e-10	1.1711433541546e-08
Merged-chr12-85992204-4	chr12	85992104	85992304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	86837.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	6.3718012399795	6.15492752342424	6.25805055622155	6.7715209224685	6.64412216816188	6.60288682050408	6.66001844353172	6.38652906532126	0.214218480511527	0.383857723525879	0.685555904565125
Merged-chr1-177737635-4	chr1	177737544	177737744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027077, intron 2 of 5)	(CA)n|Simple_repeat|Simple_repeat	7830.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	5.03494428754889	5.07511089235716	5.29153566217969	5.32054861298701	5.10950073355915	5.06363955277022	5.32136608184298	5.16655205743046	-0.0553257852169363	0.854743846094425	0.945298752280211
Merged-chr7-101571121-4	chr7	101571044	101571244	+	872.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11D|LTR|ERVK	10017.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	4.25954458174285	4.64781863344566	4.3928917525812	4.23101169462331	4.29545436090141	4.38767347206993	4.146088577639	4.47134750889463	-0.140473986817956	0.721472833589576	0.888772195300388
Merged-chr17-73034199-1	chr17	73034099	73034299	+	706.0	f0_c57.idr	Intergenic	Intergenic	-73786.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	4.17383420696872	3.92125753636185	4.12691562222872	4.72629797927884	4.24090342344134	4.04008411047909	4.36832222568983	4.12446496369902	-0.231926732425599	0.612703125461272	0.832832725096038
Merged-chr2-45200786-3	chr2	45200684	45200884	+	855.511108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83342.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	4.1281407083694	4.32596521593315	3.5942028671312	3.93192012843425	4.02595531449972	4.11333320235943	3.81942313801552	4.08165191540166	-0.0189857995003318	0.96737059550104	0.988535950285959
Merged-chr9-121616590-2	chr9	121616490	121616690	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026915, intron 1 of 5)	intron (NM_026915, intron 1 of 5)	25003.0	NM_026915	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	3.19218904019704	2.97705925708586	3.52981422637098	3.27811127026397	3.4507894045339	3.48682239793871	3.46475798227424	3.37029035778559	0.65188865036602	0.230039224953083	0.539194260978254
Merged-chr4-155178469-4	chr4	155178357	155178557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	44078.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	5.86737443049822	5.72594861073223	6.0543445681965	6.19948281481877	6.23163443234644	6.11873774902969	6.48551655733771	6.45316459203078	0.520298060794055	0.0392556781588668	0.199370668260434
Merged-chr1-38989317-3	chr1	38989216	38989416	+	633.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026850, intron 1 of 5)	MTC|LTR|ERVL-MaLR	1502.0	NM_026850	68833.0	Mm.28121	NM_026850	ENSMUSG00000026078	Pdcl3	1110061A19Rik|C80025|Viaf1	phosducin-like 3	protein-coding	3.29523728999383	3.16659449489736	3.18818216811335	3.34934319444924	2.68501693044117	3.11777751378342	2.93279177386754	3.06925776722311	-1.27641404016665	0.0406986802185935	0.203934625785235
Merged-chr2-158136455-4	chr2	158136368	158136568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 3 of 12)	intron (NM_009373, intron 3 of 12)	9924.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	7.28956127507223	7.7211341067952	8.43619269054934	7.75626226431273	7.38606509928921	7.33966694000852	7.70128603640274	7.43372094192288	-0.518683048890285	0.0392295098659456	0.199294645831714
Merged-chr17-30612687-4	chr17	30612595	30612795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025374)	promoter-TSS (NM_025374)	-36.0	NM_001113560	109801.0	Mm.261984	NM_025374	ENSMUSG00000024026	Glo1	0610009E22Rik|1110008E19Rik|2510049H23Rik|AW550643|GLY1|Glo-1|Glo-1r|Glo-1s|Glo1-r|Glo1-s|Qglo	glyoxalase 1	protein-coding	7.976640973321	8.06322146425909	7.67627313910283	7.83057629934208	7.62922136881217	7.71854837646511	8.07241592197315	7.78491863268001	-0.110876583956316	0.553110804045872	0.799974396526481
Merged-chr8-70816900-4	chr8	70816771	70816971	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008353, intron 11 of 15)	CpG	8422.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	6.3369872485307	6.46240820056855	6.05410932932335	6.26853356262498	5.61566910079483	5.53833961605602	4.98067303765011	5.24425571837984	-1.48650422773796	3.22590538587355e-07	1.24251471569856e-05
Merged-chr11-103102911-4	chr11	103102819	103103019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_025988, exon 2 of 11)	5' UTR (NM_025988, exon 2 of 11)	1231.0	NM_025988	67131.0	Mm.390367	NM_025988	ENSMUSG00000056938	Acbd4	2010009P05Rik|2010015A21Rik|AI849317	acyl-Coenzyme A binding domain containing 4	protein-coding	8.29603583283332	8.47587925988066	8.16191508275873	8.41932069124471	8.28256365593768	8.40032078536943	8.08551888884831	8.12503326809635	-0.150711317591633	0.365589210521251	0.670295715323899
Merged-chr3-158036590-4	chr3	158036487	158036687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289524)	promoter-TSS (NM_001289524)	52.0	NM_001093752	69207.0	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	7.63954263210603	7.46056139345187	7.44194181120137	7.48672438788029	7.70164879683791	7.79201054422531	7.3856963868098	7.61028471076565	0.164699985817063	0.359293417749657	0.665255617589146
Merged-chr6-145765159-4	chr6	145765048	145765248	+	903.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43235.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	4.61213679501661	4.84104882442087	5.77374589963196	6.3932357309552	4.87654722182871	4.59451999260858	5.08575371431538	5.35904911860383	-1.03809144706345	0.167982976179572	0.459915036621355
Merged-chr13-23772772-3	chr13	23772676	23772876	+	814.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9108.0	NM_030609	80838.0	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding	4.07218399859376	4.01616513673117	3.98188869089103	3.88585372976509	3.61087889173732	3.89850988967983	3.76326783012465	4.11329978342971	-0.375217585452959	0.407395932828434	0.703636793592033
Merged-chr14-31160137-2	chr14	31160037	31160237	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 13 of 68)	intron (NM_138672, intron 13 of 68)	8504.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	3.15698959904678	2.93951094950737	3.43541713045144	3.0572617681145	3.1192978839155	3.33175610358614	3.14601165738057	3.5292876510607	0.503992423456108	0.381268986775912	0.683560179285592
Merged-chr12-99562502-4	chr12	99562393	99562593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1348.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	5.57662073222116	5.26909881081236	5.47579631104491	5.39199389988628	5.09009203058583	5.38673534363282	5.42157980666666	4.99524265026487	-0.358961034817656	0.22969552150513	0.538813547740569
Merged-chr10-90970059-2	chr10	90969959	90970159	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001128086, exon 25 of 25)	3' UTR (NM_001128086, exon 25 of 25)	112684.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	3.0127707544606	2.60338471785153	2.74376306158284	2.67714947999093	2.77692170536221	3.30117134177306	3.17051704786886	3.28540893325639	1.62487190622846	0.0118053996596827	0.0888544509227611
Merged-chr13-69392375-4	chr13	69392243	69392443	+	940.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141521.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	4.5260373460226	4.21034693616931	4.52676517451686	3.94522453398392	5.18843472425322	4.7032735575107	4.83833638974397	4.72090710078969	1.28224242418205	0.001056621145928	0.0140683195933426
Merged-chr2-172370621-4	chr2	172370628	172370828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291185)	promoter-TSS (NM_001291185)	-158.0	NM_011497	20878.0	Mm.249363	NM_011497	ENSMUSG00000027496	Aurka	AIRK1|ARK-1|AU019385|AW539821|Ark1|Aurora-A|Ayk1|IAK|IAK1|Stk6	aurora kinase A	protein-coding	7.01900749735806	7.20130833367468	7.22502939225412	6.72801794100846	6.93808585604481	7.20912880007735	6.99704943579547	6.87141958710986	-0.0542497065536532	0.800757411730052	0.923158042042148
Merged-chr6-121183885-4	chr6	121183764	121183964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_130903, exon 1 of 7)	non-coding (NR_130903, exon 1 of 7)	197.0	NM_001304773	74043.0	Mm.491240	NM_028730	ENSMUSG00000067825	Pex26	4632428M11Rik	peroxisomal biogenesis factor 26	protein-coding	6.95697590265583	6.75744517164748	6.31886032355422	7.00150889173251	6.72307561405767	6.85588386730228	7.15053775411709	7.07264890022973	0.225765994771106	0.341605894706094	0.650639445837748
Merged-chr9-115805488-4	chr9	115805379	115805579	+	911.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103976.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	4.51888520191119	4.12370890118805	4.67701098968612	4.79937071106828	4.51636493546664	4.51750971115629	4.57927897136778	4.81364401237924	0.0960465463221531	0.806186379747194	0.925372909021511
Merged-chr4-12036769-4	chr4	12036696	12036896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51161.0	NM_177861	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	5.45624789404661	5.87084029966593	5.60595906125093	5.44623734764893	6.10187655499282	6.33775981243498	5.918376182991	5.76029317867674	0.722838202168287	0.00845360160926217	0.0697887855422956
Merged-chr2-9989836-4	chr2	9989735	9989935	+	963.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027748, intron 2 of 6)	intron (NM_027748, intron 2 of 6)	58774.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	4.85363167869857	4.70676464662339	4.92589662277431	5.09122412110921	4.65217442014021	4.74674834883892	5.1510935426928	4.99014199491105	-0.0392218974092641	0.909664259780875	0.966431719557941
Merged-chr16-46010472-4	chr16	46010358	46010558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134480)	promoter-TSS (NM_001134480)	-45.0	NM_001134480	433022.0	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	8.7687742705535	8.81393941409044	8.89261215166945	8.95299290215413	8.72807123033295	8.8119694572549	9.01763007004586	8.73099890156318	-0.0443642098699638	0.769516707092219	0.909742530773464
Merged-chr7-74962198-2	chr7	74962098	74962298	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-68013.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	3.30998446697028	3.08399917789697	3.41518180221692	2.85681742746412	3.1971659249307	2.97035188458326	3.58405207930519	3.07019290921052	0.182755295432221	0.767674027709168	0.909068170930839
Merged-chr14-77547069-4	chr14	77546953	77547153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253759, intron 7 of 19)	intron (NM_001253759, intron 7 of 19)	-40185.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	6.32596706054143	6.24624896655437	6.49049386104348	6.68381755360174	6.65015112197386	6.7488925685036	6.57066346167351	6.83940584147578	0.346893166831079	0.122418924464521	0.387738914451124
Merged-chr7-25785027-4	chr7	25784928	25785128	+	953.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 4 of 19)	intron (NM_009465, intron 4 of 19)	3705.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	4.47951904200833	4.1365752993393	4.21905435484414	4.40539184652787	4.44872752891132	4.48484520730535	4.57106738666922	4.16745217987227	0.246702059812109	0.525533372310429	0.783292987429517
Merged-chr14-65781747-3	chr14	65781652	65781852	+	700.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-24159.0	NM_023209	52033.0	Mm.24337	NM_023209	ENSMUSG00000022033	Pbk	2810434B10Rik|AW538537|D14Ertd732e|TOPK	PDZ binding kinase	protein-coding	3.13613462254565	2.81429608769518	3.08376674446734	3.29697553480605	2.58221584436263	2.58139829822764	2.70348491252917	2.96938094984902	-1.82857569590826	0.0104187691820324	0.0813512035550552
Merged-chr19-24432711-3	chr19	24432663	24432863	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008846, intron 3 of 14)	intron (NM_008846, intron 3 of 14)	44711.0	NM_026520	68034.0	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|Gm9849	family with sequence similarity 122, member A	protein-coding	2.94991312527258	2.94030578392786	2.95019430336992	2.8999687320598	3.89324472759355	3.47348829241906	3.60109439962856	3.83349549889896	2.89097019361569	5.98845038358388e-07	2.1825494616135e-05
Merged-chr11-69664811-4	chr11	69664753	69664953	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001291058, exon 5 of 6)	exon (NM_001291058, exon 5 of 6)	1317.0	NM_001291058	12514.0	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	3.94698421212635	4.40552420136167	3.89151776649476	4.06569322483341	4.3049692301139	4.01464350070644	4.17811388221231	4.61360611633704	0.501303561116196	0.250585086599881	0.561758554977573
Merged-chr12-100604661-2	chr12	100604561	100604761	+	658.041626	f1_balb.idr|f1_c57bl6.idr	intron (NM_153587, intron 5 of 17)	intron (NM_153587, intron 5 of 17)	-83839.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	2.62315316807561	2.90116913660517	2.76584658853185	2.74268985120237	3.02921395032945	2.93907786095981	3.05357323380268	2.95289377617923	1.03356319743425	0.0880479140927601	0.323699630817134
Merged-chr11-96824265-4	chr11	96824144	96824344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130454)	promoter-TSS (NM_001130454)	-117.0	NM_001130451	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	5.82333594153351	6.04069397852181	5.67303464716304	5.67583610889737	6.24045981111852	5.82288277781639	5.69655158680931	5.74687917899434	0.166168459098415	0.547783166326182	0.797027776266171
Merged-chr8-108683906-4	chr8	108683806	108684006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30738.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	5.23929861136763	5.5519241982267	5.6769169276902	5.59206605838292	5.18243935831867	5.35025365710066	5.3376665171124	5.1697785678431	-0.486027461978038	0.0915347320836097	0.330590280102194
Merged-chr7-141393032-4	chr7	141392922	141393122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011528, intron 1 of 7)	intron (NM_011528, intron 1 of 7)	862.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	5.57024883000692	5.64716223200285	6.13759733137978	5.77710183018301	5.45483897846176	5.33443165169529	5.72132449139825	5.64723201144492	-0.421911371098062	0.138459718530069	0.413971701820968
Merged-chr8-125116746-4	chr8	125116665	125116865	+	976.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 3 of 12)	intron (NM_174854, intron 3 of 12)	62570.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	5.06836662662398	5.90915846149631	5.35582405101504	5.37548013043367	4.90705001054624	5.2466916275987	5.17883470934845	4.91484133742319	-0.737713903910787	0.0292740933658319	0.164575717829625
Merged-chr17-53587840-4	chr17	53587735	53587935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190846, intron 1 of 17)	L2a|LINE|L2	3709.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	5.45998339097098	5.28236351003105	5.61679973898405	5.20497492056678	5.75041175041991	5.21873369218305	5.19232512564066	5.56302584674104	0.138017733453741	0.655710166885963	0.85628727055326
Merged-chr9-56076084-4	chr9	56075986	56076186	+	860.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13890.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	4.43089410362675	4.51404738851827	4.68394949036441	4.6567448085192	4.63574816945784	4.36106140125893	4.73527986235053	5.15205987285738	0.367272330110416	0.332601522442767	0.643531688755946
Merged-chr7-143296658-4	chr7	143296582	143296782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_001461)	promoter-TSS (NR_001461)	-135.0	NR_001461	63830.0	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	7.21162628824952	7.39561778271438	7.10706125530854	7.27405095695916	7.46272647156858	7.51825740730372	7.39294258912566	7.3053730337079	0.224961447117248	0.211612574904604	0.516329750073179
Merged-chr7-114527978-3	chr7	114527877	114528077	+	951.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 12 of 15)	intron (NM_011055, intron 12 of 15)	34995.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	3.85777744823632	3.76656671482827	4.15108559146652	4.29270957255517	3.94706525742693	4.23111150339697	3.99598996464122	4.05824761052828	0.0215382966408024	0.961708020711884	0.986287517870095
Merged-chr13-21172372-4	chr13	21172287	21172487	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Gln-CAG|tRNA|tRNA	-7544.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	4.80050268384774	5.41655441683928	4.58912313735991	4.60894696180608	5.03413848178215	5.01537176062554	4.95932168967524	5.04636710751795	0.228818014772471	0.535618884690677	0.789809240803911
Merged-chr2-132180872-1	chr2	132180772	132180972	+	959.0	f0_balb.idr	Intergenic	Intergenic	-35552.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	4.04692038168284	3.83702747605611	3.55351558396527	3.8176257498392	3.63828324640281	3.84154007191559	3.70772753860322	3.61045972433246	-0.375893469708084	0.42554344812518	0.717002180000052
Merged-chr2-127080125-4	chr2	127079994	127080194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 1 of 7)	MTD|LTR|ERVL-MaLR	9437.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	6.38456596815189	6.47215056951827	6.2544608285405	6.18239100471059	6.55540593672764	6.66353791599403	6.35302379446252	6.43340587105188	0.277533073538162	0.210023503064742	0.514484230514723
Merged-chr7-118703936-2	chr7	118703846	118704046	+	853.0	f0_balb.idr|f0_c57.idr	intron (NM_019580, intron 1 of 5)	intron (NM_019580, intron 1 of 5)	1792.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	4.42201557384061	4.19723878277385	4.24166120356302	4.13009953356782	4.63685490628732	4.21401629999119	4.69891784843562	4.68521441164799	0.780363773345116	0.0411706790540462	0.205288109589349
Merged-chr1-138993702-1	chr1	138993602	138993802	+	642.5	f0_balb.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	16045.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	3.52880465011727	3.34847472533704	3.03958931565555	3.50236123548782	3.35404522126745	3.53749398976879	3.46320815305528	3.52725625382161	0.316649518351922	0.556841964739128	0.802235069284239
Merged-chr14-122060863-4	chr14	122060773	122060973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26199.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	6.08321623354641	7.10973039991772	6.32216722164529	6.64493268925883	6.96693952802865	6.95687256012047	6.79970203599805	6.05599651527481	0.202757068059584	0.512508617335521	0.775855557112548
Merged-chr5-24383618-4	chr5	24383524	24383724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001002897)	TTS (NM_001002897)	8519.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	7.45235214073858	7.36101098846678	6.63800089476902	6.85324192408074	7.03579199160424	6.71322720893608	6.91132098791774	6.94160039027782	-0.285032873608783	0.245756621722011	0.556915331981885
Merged-chr5-90742250-4	chr5	90742162	90742362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17036.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	8.033728927285	8.22335763969592	8.16190572209499	8.10776778052583	8.02843863881319	7.97839263488744	8.08041116990379	8.10103550787234	-0.109941348529071	0.476727166025279	0.753110052062842
Merged-chr2-93462015-4	chr2	93461920	93462120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271461)	promoter-TSS (NM_001271461)	-169.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	7.65433150998423	7.76354158701866	7.62132755017054	7.83078680133545	7.83433455885837	7.70866487576102	7.65965133148547	7.45893584901201	-0.064373854166174	0.715610155716033	0.886328547107336
Merged-chr8-81767881-4	chr8	81767782	81767982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001297593, intron 4 of 23)	intron (NM_001297593, intron 4 of 23)	425320.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	5.2870387802419	5.43222870755666	5.38180156625589	5.6768884694944	5.52395315626581	5.29409969846686	5.76092095014652	5.57320943291056	0.135444876143886	0.639859103488264	0.84778174913799
Merged-chr5-132467218-1	chr5	132467118	132467318	+	1000.0	f0_balb.idr	intron (NM_177047, intron 1 of 19)	intron (NM_177047, intron 1 of 19)	75125.0	NM_177047	319974.0	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	4.70782893624635	3.50856886337136	3.91440122046353	4.37421139120328	2.94155374175141	3.08224302889269	3.036522803755	3.1262351512244	-5.17036020624023	1.07228633189703e-07	4.56758041999394e-06
Merged-chr12-29713062-2	chr12	29712973	29713173	+	773.708374	f0_c57.idr|f1_c57bl6.idr	intron (NM_001361657, intron 3 of 24)	intron (NM_001361657, intron 3 of 24)	-26628.0	NR_046080	328075.0	Mm.447832	NR_046080	ENSMUSG00000112663	C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	3.32260323622554	3.21769008627347	3.32299702529374	3.24398473677064	3.92231955507402	3.62174059797862	3.78688681235548	3.75671076408142	1.66081835105013	0.000660408762087242	0.00963263017963274
Merged-chr12-99154381-3	chr12	99154288	99154488	+	935.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8420.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	3.90426244409886	3.83635762794782	4.08615740258187	4.03903062031728	3.68149332240877	3.69095119541658	4.06747713513677	3.69157895001209	-0.51972547063212	0.255992136251199	0.567581125814292
Merged-chr10-13987553-4	chr10	13987429	13987629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	21150.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	5.08529841505948	5.33442825403084	5.28827370548741	5.49874499491108	5.86123903161141	5.06911455958245	5.51719210774112	5.70862506303031	0.460039025683869	0.149678949582084	0.432035602283179
Merged-chr8-41053512-4	chr8	41053358	41053558	+	899.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 3 of 13)	intron (NM_001005863, intron 3 of 13)	1338.0	NM_001005864	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	4.25699612172864	3.95228880120189	4.65723699348953	4.91087601165299	4.46198190567707	4.00499647521107	4.09186629916957	4.47019691503862	-0.531509984900199	0.260412554647483	0.572254800013992
Merged-chr8-90873263-4	chr8	90873104	90873304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	44369.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	6.23841731899366	6.52971497017188	6.66264980204269	6.9612334585224	5.81475620338949	5.81560054705191	5.85479121469255	6.19575997945894	-1.07842234032155	4.29285380447312e-05	0.000989831684316788
Merged-chr9-124112757-4	chr9	124112674	124112874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8769.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	5.83074641884259	5.76269968612868	5.75850762070699	5.94380887283087	5.78109039337353	6.00658980137019	5.77836929928122	6.00427002920912	0.0881924801771461	0.723356218677687	0.889560682260869
Merged-chr4-59626109-4	chr4	59626004	59626204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153158)	promoter-TSS (NM_153158)	-107.0	NM_001015681	230259.0	Mm.45688	NM_153158	ENSMUSG00000045071	E130308A19Rik	-	RIKEN cDNA E130308A19 gene	protein-coding	6.25201410996603	6.07308584039652	5.94092302693643	6.14862039767873	6.19635662532504	5.88855543674709	6.06507966240768	6.55703245711975	0.141930084264375	0.576657830277711	0.813660700577592
Merged-chr18-8694347-3	chr18	8694229	8694429	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-518527.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	3.7960321240028	3.63628925067462	3.79661179688772	2.44450768652145	6.28633030915484	6.46963454519961	6.18173724378054	6.44625014719253	10.0207105877148	1.1900245140131e-27	1.08595839593511e-24
Merged-chr11-106488457-3	chr11	106488361	106488561	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023913)	promoter-TSS (NM_023913)	-665.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	4.74858560931805	4.77018087706995	4.47341372509366	4.08640929519	5.14088611301607	4.84907172228421	4.21533637187072	4.23069296967793	0.29169121401265	0.524673918344561	0.783071329178099
Merged-chr1-39522769-3	chr1	39522687	39522887	+	892.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12914.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	3.34857827784721	3.66159846626109	3.63254654760946	3.518114948644	3.67055784558308	3.80064135672061	3.39871138230383	3.40910991295667	0.120104211959807	0.811881086233955	0.927317521365569
Merged-chr13-56352644-4	chr13	56352604	56352804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10196.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	5.76805494782913	5.5177504088397	6.03780814836788	5.62659971445384	5.17575489256856	5.74458981910581	5.36908358955011	5.51027944471778	-0.492358548395087	0.0971665131690029	0.341575229200734
Merged-chr5-93120622-3	chr5	93120539	93120739	+	768.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009818, intron 1 of 9)	intron (NM_001009818, intron 1 of 9)	27223.0	NM_001347377	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	3.15371092267681	3.21323888693382	3.43863828620619	3.38810290240462	3.10592266623443	3.32780538004198	3.42423916044507	3.27381743114862	-0.0917550083042795	0.865650746445382	0.949726204279319
Merged-chr13-107782828-3	chr13	107782719	107782919	+	803.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 3 of 14)	intron (NM_145456, intron 3 of 14)	95422.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	3.16640723466473	2.95089978831657	3.27370377343899	3.16929144288829	2.87910520742508	2.88672016801055	3.09816427933044	3.16509415691691	-0.551093324330581	0.352185769979429	0.659353818166894
Merged-chr9-121904565-4	chr9	121904480	121904680	+	912.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276719, intron 2 of 3)	intron (NM_001276719, intron 2 of 3)	6225.0	NM_021609	59289.0	Mm.258105	NM_021609	ENSMUSG00000044534	Ackr2	AI464239|CCR10|CCR9|Ccbp2|Cmkbr9|D6	atypical chemokine receptor 2	protein-coding	4.26176324966613	4.37507350443354	4.26241178989172	4.22654399468712	4.32192809665687	4.02564555570172	4.48519148922745	4.30383218072675	0.044827439504578	0.908929684910566	0.966156027093308
Merged-chr9-83682142-3	chr9	83682043	83682243	+	891.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9332.0	NR_046066	100039222.0	Mm.405596	NR_046066	ENSMUSG00000100155	Gm2109	-	predicted gene 2109	ncRNA	3.85822988672056	3.61758750693217	4.18389606059808	4.33926061562232	3.84583729397272	3.8093892864349	4.20432601228567	3.80274293792232	-0.31094371045148	0.525773560884049	0.783367294725902
Merged-chr6-29241893-4	chr6	29241783	29241983	+	831.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER119|DNA|hAT-Charlie	-25519.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	4.66425329965407	4.25851390820273	3.88028432341112	4.21541922851717	4.04139181356711	4.46078536434349	4.31201866039656	4.19531708427111	-0.0611305413852098	0.888076774942888	0.95799613184499
Merged-chr3-52019811-4	chr3	52019734	52019934	+	857.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	85172.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	4.03103159881605	4.10445462411989	4.36583251031766	4.43906638175771	4.45766590065641	4.04176179448233	4.67339619554548	4.36305415021277	0.353649256121391	0.398909060632239	0.696993422607056
Merged-chr16-91727537-4	chr16	91727422	91727622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026994, intron 1 of 11)	intron (NM_026994, intron 1 of 11)	1280.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	7.22035902715655	7.34017281336119	6.85666122562111	7.18820372176382	7.33339053776582	7.39838904139199	6.9331535690969	7.35094493230057	0.136447212981164	0.511817600902193	0.775665148181004
Merged-chr2-155755922-4	chr2	155755823	155756023	+	934.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011171)	TTS (NM_011171)	4706.0	NM_011171	19124.0	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	4.40065297678472	4.33975643577069	3.95467040109306	4.12038150333934	5.34926923157183	5.17314155907915	4.7846259453589	4.69600772959652	1.77070609477542	4.76166556156273e-06	0.000141778535286566
Merged-chr5-144935429-4	chr5	144935312	144935512	+	910.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038627, intron 1 of 17)	intron (NM_001038627, intron 1 of 17)	30418.0	NM_001038627	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	4.24029025124315	4.67477694520907	4.24091696601106	4.17981124474963	4.54513295017631	4.46265716756472	4.40081313151181	4.45938130735859	0.294121440970828	0.447830660530142	0.73332468018769
Merged-chr15-81858305-4	chr15	81858180	81858380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020507)	promoter-TSS (NM_020507)	46.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	5.62427312917353	5.99843631421481	5.25144310590942	5.12998033415411	6.00001711050577	6.06678682205596	5.72440861046395	6.01328655967249	0.687958266587579	0.0269033598224086	0.155947005160655
Merged-chr1-172205935-4	chr1	172205861	172206061	+	724.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329871, intron 1 of 3)	intron (NM_001329871, intron 1 of 3)	843.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	3.6871117803176	4.07702710327117	3.45374904906295	3.37763548641396	3.71804656654513	3.69417927793822	3.67263888158241	3.97201496226153	0.28138646556145	0.584297832563661	0.817562205564865
Merged-chr15-66823148-3	chr15	66823048	66823248	+	949.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	8681.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	4.04588169179439	4.17191049417586	4.67483419823939	4.52599434961038	3.90962506657428	3.94876513359366	4.12616728100344	3.93862339456471	-1.03563087632192	0.0181536772770706	0.119955495256648
Merged-chr14-118820257-3	chr14	118820125	118820325	+	846.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160097, intron 1 of 3)	intron (NM_001160097, intron 1 of 3)	32354.0	NM_001160097	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	4.35390174165859	3.74768045105335	4.16895652106518	4.16727073519896	3.70547090158335	3.47794426175834	3.48907396116261	3.84944319015791	-1.4051842091135	0.0050449397736216	0.0478425809160531
Merged-chr14-60634729-4	chr14	60634627	60634827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033272)	promoter-TSS (NM_001033272)	22.0	NM_001033272	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	5.90121789522906	5.60272376319515	5.34698910353411	5.70943464385417	5.79041202512462	5.5261658784189	5.78400745346396	5.94006634314868	0.186333245071513	0.497239103088304	0.766982020988234
Merged-chr5-103755494-4	chr5	103755404	103755604	+	920.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	931.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	4.11486142587255	3.94886534517626	3.97255755176524	4.07192051055094	4.41490138220447	3.93243595605327	3.79752305579799	4.15717202469554	0.210498106398951	0.634343832877184	0.845111112089176
Merged-chr4-11156992-3	chr4	11156883	11157083	+	924.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199105, intron 1 of 4)	intron (NM_001199105, intron 1 of 4)	542.0	NM_021897	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	3.99940039969528	3.75667913511203	3.79895043419191	4.00928830898881	4.0373946744178	3.86171472406183	4.15357381670834	3.9502157695408	0.285950108821245	0.510785410795601	0.775005008659931
Merged-chr17-40708962-4	chr17	40708877	40709077	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur1|LINE|L1	-18143.0	NM_001038500	619517.0	Mm.391018	NM_001038500	ENSMUSG00000073396	Esp1	EG619517|Gm6084	exocrine gland secreted peptide 1	protein-coding	5.70525743260382	5.85970126230115	5.60418721535805	4.79256504376469	6.05395921653888	5.61182457363054	5.52180551664885	5.75024781795095	0.362004640504401	0.298918238660398	0.611188708192821
Merged-chr2-59338639-4	chr2	59338514	59338714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 13 of 20)	intron (NM_175464, intron 13 of 20)	48068.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	7.9583038264218	7.86625748655393	8.20381287586637	8.35523146233777	7.95940884373875	8.02601288709203	8.17084929209676	8.18667135503084	-0.0401869351478325	0.826122418864946	0.933285205415166
Merged-chr11-69767682-4	chr11	69767583	69767783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029348, intron 1 of 3)	intron (NM_029348, intron 1 of 3)	1771.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	6.68476698863638	6.2477121144064	6.63966420915313	6.85041757489817	6.91638930967999	6.45787211573096	6.934102857414	7.10147751426454	0.345649354720318	0.154674685738246	0.439943634611891
Merged-chr7-99401604-4	chr7	99401503	99401703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201352, intron 2 of 17)	MIR|SINE|MIR	20085.0	NM_001362166	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	6.05752770527795	5.46136085654042	6.03893528388077	6.33753876417618	5.77248708589114	5.55388325671849	5.86118037037968	5.58580525648197	-0.524851274440616	0.0788655802599212	0.303929244034701
Merged-chr11-64832332-4	chr11	64832241	64832441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146694.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	6.88830673569854	6.79972494643249	6.87721102822876	6.71845021230988	6.10909035429886	6.44600429273394	6.21553253513376	6.04501764307921	-0.897491484317777	4.24704415765017e-05	0.000981476883819045
Merged-chr3-84883964-4	chr3	84883886	84884086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 3 of 13)	B4|SINE|B4	19841.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	5.99991927188556	6.09135342851406	6.37797227803287	5.9362006734513	6.40734644704567	6.36952043725987	6.34528085857943	6.39041853669267	0.426794416081395	0.0648089174439324	0.270717953916764
Merged-chr2-3285281-2	chr2	3285181	3285381	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008708, intron 1 of 13)	intron (NM_008708, intron 1 of 13)	1069.0	NM_001290370	18108.0	Mm.65021	NM_008708	ENSMUSG00000026643	Nmt2	A930001K02Rik|AI605445|AU044698|hNMT-2	N-myristoyltransferase 2	protein-coding	3.62520345838456	3.10370959518848	3.20933010515545	3.06600419311025	3.35362555775867	3.32224282280115	3.25710061908591	3.32501696458508	0.200692607603715	0.719584828441528	0.888022825078143
Merged-chr6-73210620-4	chr6	73210523	73210723	+	958.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164669, intron 2 of 76)	ORR1D1|LTR|ERVL-MaLR	11008.0	NM_001164669	330355.0	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	5.1459115893268	4.59944415778777	4.67205025440218	4.98109727712583	5.6004533605652	5.66523470628632	5.38757610235658	5.48937611898697	1.21400282492803	0.000127631929884699	0.00248964459777007
Merged-chr13-13349519-3	chr13	13349421	13349621	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44103.0	NM_031999	83924.0	Mm.379269	NM_031999	ENSMUSG00000021306	Gpr137b	AI788917|AU016435|AW546472|C730041E01|C80550|C80741|D13Abb1e|Tm7sf1	G protein-coupled receptor 137B	protein-coding	3.32880617382505	3.32247165831169	3.59904672257295	3.42664239960138	3.46169019561421	3.31398282383548	3.58382536968232	3.49608806102612	0.155591320441717	0.758765843647981	0.905296757937236
Merged-chr9-31385593-2	chr9	31385493	31385693	+	804.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172766)	promoter-TSS (NM_172766)	-599.0	NM_172766	235134.0	Mm.238146	NM_172766	ENSMUSG00000042185	Nfrkb	A530090G11Rik	nuclear factor related to kappa B binding protein	protein-coding	2.40169848111576	2.31805445278707	2.40201588160439	2.15904439220179	2.34130158634623	2.14968240853785	2.19683959991582	2.27168257407512	-0.449540100981854	0.555957070684277	0.801730133825154
Merged-chr2-27770399-8	chr2	27770246	27770446	+	828.752075	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59763.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	4.13149278410569	4.71362239287735	3.83837276818301	3.19639734274135	4.01029955845195	3.90739888931437	3.82225131953417	3.83611968797651	-0.518612893603504	0.37159806356894	0.675623350961036
Merged-chr9-58269561-4	chr9	58269453	58269653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16389.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	6.38680750148023	6.01969228253018	6.33743093879202	6.54259830121384	6.07215390886773	5.73560680130583	6.03924144838138	5.88351287007369	-0.612591068369184	0.0154190401344203	0.106959541733544
Merged-chr5-146221453-4	chr5	146221363	146221563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256086)	promoter-TSS (NM_001256086)	-6.0	NM_028774	74132.0	Mm.26696	NM_028774	ENSMUSG00000029634	Rnf6	1200013I08Rik|5730419H05Rik|AA537053	ring finger protein (C3H2C3 type) 6	protein-coding	5.58442267788388	5.51140912508682	5.38092846204823	5.38775690899409	6.00738808619387	5.58983974675614	6.05838787850431	5.52634800250919	0.609648355485696	0.0293883187669547	0.165009950423055
Merged-chr2-173019442-3	chr2	173019319	173019519	+	768.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2483.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	3.89627963893163	3.56433891493363	3.80267138798571	3.74758833618075	3.58894661083648	3.81950248843946	3.6327985874028	3.75065547624528	-0.179500632236435	0.700112016261241	0.879044875360757
Merged-chr14-47647118-4	chr14	47647021	47647221	+	919.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2190.0	NM_001347527	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	5.51558471753408	5.58821894894739	4.94626528474344	5.00547700920656	5.48767743695321	4.78794909359663	5.03050152678852	4.78236107274374	-0.409076073746577	0.277064411109944	0.589219232697781
Merged-chr2-165876394-3	chr2	165876309	165876509	+	863.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291158, exon 1 of 24)	5' UTR (NM_001291158, exon 1 of 24)	2028.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	2.49709353004416	2.44266217839427	2.80807247987835	2.15443046006388	3.32686290815213	3.05875478188714	3.39866532462756	3.11772338033372	3.63406660753243	0.0237271384257365	0.143294924996224
Merged-chr15-76818706-4	chr15	76818642	76818842	+	826.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168288)	promoter-TSS (NM_001168288)	-572.0	NM_198420	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	3.91805857725096	3.50071790832675	3.46532024195801	3.6324028393876	3.69539543334926	3.38405860764794	3.67161655421571	3.7825016149087	0.0166749896532257	0.973374994249149	0.990485651958264
Merged-chr13-55405623-4	chr13	55405506	55405706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011392, intron 8 of 12)	intron (NM_011392, intron 8 of 12)	5958.0	NM_011392	20505.0	Mm.276355	NM_011392	ENSMUSG00000021490	Slc34a1	NaPi-IIa|Npt2|Npt2a|Slc17a2	solute carrier family 34 (sodium phosphate), member 1	protein-coding	6.01939014051913	6.58417024442278	6.02045002171544	6.17224552318925	6.34628813507526	6.38902609276211	6.29408411223249	6.52229897610371	0.246694133473421	0.312204014934437	0.62411867603826
Merged-chr15-6391355-2	chr15	6391255	6391455	+	888.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	4607.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	3.62679636807427	3.52217910716563	3.42346886077133	3.36404845487063	3.41417392365958	3.35784809002783	3.35448842141174	3.24451276017787	-0.469227258169094	0.364501512868664	0.669279814395716
Merged-chr4-133553189-4	chr4	133552991	133553191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011850)	promoter-TSS (NM_011850)	-285.0	NM_011850	23957.0	Mm.346759	NM_011850	ENSMUSG00000037583	Nr0b2	SHP|SHP-1|Shp1	nuclear receptor subfamily 0, group B, member 2	protein-coding	3.89529337351292	3.36833217231982	3.48352994206176	3.58454119264572	3.68706491341914	3.71732300911685	3.87816219891888	3.65192372369891	0.432002358098609	0.375732133382319	0.67859868094207
Merged-chr9-110131969-4	chr9	110131850	110132050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009211)	promoter-TSS (NM_009211)	-74.0	NM_009211	20588.0	Mm.85410	NM_009211	ENSMUSG00000032481	Smarcc1	AI115498|BAF155|Rsc8|SRG3|msp3	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	protein-coding	7.50195126387245	7.76500713204636	7.43347289292833	7.62128691875473	7.95363919494598	8.0832540666803	7.98786856153948	7.82081898401863	0.485101001966621	0.00501701901183885	0.0476841228793801
Merged-chr15-38567596-3	chr15	38567489	38567689	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045757, intron 2 of 2)	intron (NR_045757, intron 2 of 2)	27345.0	NR_045757	69679.0	Mm.416890	NR_045757	ENSMUSG00000102106	2310043O21Rik	-	RIKEN cDNA 2310043O21 gene	ncRNA	3.32365998103645	3.36502834319304	3.86163853312718	3.75069653180984	3.40011003094825	3.16659466583295	3.42686947767759	3.19529924678584	-1.01093733682774	0.0727886997901759	0.290237345939439
Merged-chr2-31025717-4	chr2	31025613	31025813	+	964.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177649)	TTS (NM_001177649)	43434.0	NM_028846	74270.0	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	5.10512127042987	5.07937640187299	5.10599487373956	4.91512658703747	4.70889134974325	4.76462930157713	4.69398792019392	5.00746068905843	-0.49964054592832	0.126175282572105	0.394701360955401
Merged-chr7-98374788-3	chr7	98374684	98374884	+	818.644409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4c|LINE|L1	-13456.0	NM_001168539	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	4.06995049742856	3.81519752429306	3.95161903895246	3.97017511085236	3.30947364824428	3.21186694099165	3.37119118658786	3.17318420346701	-2.40377885471041	1.90432123162697e-05	0.000487324187982208
Merged-chr13-49183941-4	chr13	49183834	49184034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3613.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	5.95823333317461	6.03612956006841	6.22966778425706	5.94974179151752	6.07210399277149	6.49396755488606	6.25235974754464	6.02270942742436	0.27034744869027	0.26892184893119	0.580490538993026
Merged-chr1-151036704-4	chr1	151036624	151036824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43289.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	6.34342253527218	5.68935998597458	6.37803046698769	6.32275757544437	5.98264599324814	5.66019404196927	6.24252694414162	6.17722255511167	-0.274202295261891	0.328432679762779	0.639918693551814
Merged-chr1-159233779-4	chr1	159233599	159233799	+	813.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011931, intron 1 of 19)	intron (NM_011931, intron 1 of 19)	1499.0	NM_011931	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	3.4653558901611	3.57724046379281	3.52248988294277	3.43502038949986	3.4755274629134	3.74659630352968	3.7108100280079	3.46399593343585	0.336030986994202	0.489518087856771	0.761821019646175
Merged-chr7-45457470-4	chr7	45457363	45457563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010240)	TTS (NM_010240)	2423.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	7.88134900279271	7.92647615539434	8.50513029277607	8.23146990157707	8.01539628700478	7.83617345992486	8.49307801608061	8.23263636079975	0.00738866241671687	0.972782189591251	0.990199257410094
Merged-chr1-177982774-4	chr1	177982668	177982868	+	967.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8630.0	NR_155538	545391.0	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	4.7012216716359	5.25903727977447	5.04778705729409	5.2297446939337	5.13639869373068	5.00485629344995	4.80526639696498	5.28838405002396	-0.0321934566279274	0.923724439671249	0.971863340184091
Merged-chr17-21962317-3	chr17	21962190	21962390	+	968.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025373)	promoter-TSS (NM_001025373)	174.0	NM_001199048	73233.0	Mm.311219	NM_001199048	ENSMUSG00000071267	Zfp942	3110048L19Rik	zinc finger protein 942	protein-coding	5.03923080638807	5.2352367802416	5.96344505323694	5.01449016524071	5.40352985028193	5.63967329894979	5.51767566108081	5.54194119090019	0.282563614932331	0.409806692790315	0.70525942551561
Merged-chr6-87625572-2	chr6	87625472	87625672	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-34829.0	NM_021381	58182.0	Mm.333226	NM_021381	ENSMUSG00000049409	Prokr1	EG-VEGFR1|Gpr73|Pk-r1|Pkr1	prokineticin receptor 1	protein-coding	3.26635083210776	3.40045437464446	3.54099219437967	3.16470644544765	3.25378937550527	3.44036769967126	3.37030947924406	3.4362581374835	0.115679429850839	0.826341412987462	0.93341395042234
Merged-chr10-80963818-4	chr10	80963719	80963919	+	963.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	33728.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	5.09680294799275	5.28407078494463	5.02874155019851	5.29141250936547	5.2097940083942	5.20365467874544	4.93252252919319	5.22160856952678	-0.0793802489431151	0.793899566567811	0.92022175040272
Merged-chr7-96484996-1	chr7	96484896	96485096	+	863.5	f0_balb.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-143032.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	3.43367924823462	3.19838712352888	4.02062906492543	3.72586102371377	2.83056484274786	2.87000911945328	3.05808488850373	3.06670679914008	-2.81278142955963	5.50373296349285e-05	0.00122844217186722
Merged-chr10-75146811-4	chr10	75146769	75146969	+	991.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081412, intron 8 of 22)	intron (NM_001081412, intron 8 of 22)	-65204.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	4.99544307647532	4.9921151382315	4.96297722459435	4.90661047929016	4.79468449968711	4.65775674187844	5.03548164080752	4.81706797037868	-0.255507096189207	0.430061400215464	0.720740306563559
Merged-chr15-4000767-3	chr15	4000665	4000865	+	650.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045740, intron 2 of 2)	L1MD2|LINE|L1	4726.0	NR_045740	328489.0	Mm.447020	NR_045740	ENSMUSG00000097662	Gm2093	100039196|A630020A06	predicted gene 2093	ncRNA	3.35330764469259	3.33623669159587	3.56841410318978	3.38684060276757	3.2109784047851	3.68582968582485	3.39752032604654	3.2299625462729	-0.080273949453322	0.880214947762262	0.955123602336575
Merged-chr17-63324272-4	chr17	63324177	63324377	+	795.483337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 6 of 8)	intron (NM_015794, intron 6 of 8)	-11304.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	4.13234632367073	4.17638451341683	3.94547904610283	4.14686179251852	3.87768412243564	4.06758728725388	4.07062495206839	3.6635305995358	-0.486974264617045	0.264370858373607	0.576455127446606
Merged-chr1-127774063-4	chr1	127773968	127774168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045298)	promoter-TSS (NR_045298)	-14.0	NR_045298	100502745.0	Mm.440061	NR_045298	ENSMUSG00000102014	2900009J06Rik	-	RIKEN cDNA 2900009J06 gene	ncRNA	9.27656794761034	9.44524089516213	9.34654892223567	8.93443971579406	9.3540228894803	9.47081166593792	9.30892658160732	9.12600157126088	0.0742070020592348	0.661823864344747	0.859602949530943
Merged-chr6-4808844-4	chr6	4808743	4808943	+	887.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER89-int|LTR|ERV1	61537.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	4.33062068669482	4.53328935018724	4.81171767824828	4.49999959571296	4.44621832686165	4.09621343793381	4.12075376164915	4.32860226465883	-0.670657323877792	0.094077078902044	0.335537024561236
Merged-chr2-61585623-4	chr2	61585515	61585715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011529, intron 1 of 7)	intron (NM_011529, intron 1 of 7)	7029.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	6.83826666315887	7.1284156349009	7.18967646726199	6.74835220703616	7.53626456556299	7.57468851413007	7.48811825539001	7.48502388666838	0.73664011489938	0.000151549457693684	0.00287810534930063
Merged-chr11-50108242-3	chr11	50108140	50108340	+	881.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 7 of 7)	intron (NM_001290750, intron 7 of 7)	-23120.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	3.50062131525412	3.32768517527188	3.44480001203051	3.55923148287464	3.59544099709023	3.43710056407554	3.68814709257329	3.60468138950445	0.385706205066019	0.4329167023268	0.722720756772337
Merged-chr7-126775407-2	chr7	126775307	126775507	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024228, intron 9 of 9)	intron (NM_024228, intron 9 of 9)	-1568.0	NM_026875	66090.0	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee like 3	protein-coding	2.43231707554052	2.65679378582834	2.43267275259789	2.17225960078914	2.02203276927786	2.02374899684301	2.0045462726465	2.16410707608064	-2.92705348300926	0.00329812489661037	0.0343765166226138
Merged-chr11-59142006-4	chr11	59141900	59142100	+	798.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5625.0	NM_199152	380698.0	Mm.339542	NM_199152	ENSMUSG00000061462	Obscn	BC046431|Gm878|UNC89	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein-coding	3.90919755949836	3.98968598127115	4.2615636714331	3.96325269568819	5.12734848832016	4.94683689928133	5.02954352292215	5.05220774421472	2.24232931317336	5.83934655004305e-10	3.92112120835391e-08
Merged-chr2-10048641-4	chr2	10048517	10048717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027748)	promoter-TSS (NM_027748)	-8.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	7.08997994906332	7.29922772742731	7.33225535728034	7.30155577563477	7.23353630728052	7.18107171404142	7.37273377862126	6.69253051656141	-0.155414866156672	0.462716040792068	0.744207905539104
Merged-chr12-12176393-4	chr12	12176241	12176441	+	944.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85798.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	3.89880857346654	3.5688371298086	3.70472140469691	3.81966121850047	3.83322885309144	3.52542148536894	3.6899465513983	3.80355605273257	-0.0951052932884786	0.840023611161929	0.939166584762349
Merged-chr5-117136067-3	chr5	117135992	117136192	+	837.9111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	2504.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	3.76247095866307	3.79732470149608	3.81436631674475	4.10204859606455	3.75965961879589	3.88157874473497	3.74800366930598	3.6517787010317	-0.380624098539731	0.409839427289582	0.70525942551561
Merged-chr10-43742876-4	chr10	43742770	43742970	+	939.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-3288.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	4.21913434352503	4.28843694596347	4.3988574664791	4.31238182770282	4.32347268040097	4.43992099813554	4.53403534305676	4.39606953687204	0.272599544332019	0.463311177617586	0.744647770407916
Merged-chr10-42018404-4	chr10	42018298	42018498	+	981.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034858)	promoter-TSS (NM_001034858)	-16.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	5.04606668505698	4.70101118028463	4.4624926391471	4.85909392275212	4.79061227511903	4.33795401051999	4.99237161645135	4.41273247216846	-0.248953669694618	0.523787086460088	0.782647016014066
Merged-chr13-56647708-3	chr13	56647603	56647803	+	796.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38117.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	3.56377074392603	3.72095577367982	3.66597049311746	3.65863526193873	3.4032381377311	3.44623904098884	3.60116830777364	3.19917373190207	-0.784971799564661	0.123566462760768	0.389846959480906
Merged-chr18-10706807-4	chr18	10706706	10706906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045379)	promoter-TSS (NR_045379)	-54.0	NR_045379	75370.0	Mm.159511	NR_045379	ENSMUSG00000097387	4930563E18Rik	-	RIKEN cDNA 4930563E18 gene	ncRNA	5.80864323502083	5.51403685021709	5.76367492842118	6.03630640975446	5.44595155688146	5.4649331360173	5.71083824943589	5.34836583250468	-0.521872695363303	0.0648515188842699	0.270857845453165
Merged-chr3-115763457-4	chr3	115763359	115763559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48404.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	5.93615088810253	5.96060463695361	5.84232730880737	6.19506038004813	5.77333325973914	6.26243333634941	6.35940308453826	5.73577821213162	0.0831125172705653	0.76333714080318	0.90713960302321
Merged-chr1-37030794-2	chr1	37030694	37030894	+	867.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91267.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	3.32725630580642	3.75063064161209	3.20993815470958	3.01262368573518	3.56126832543583	3.19229904771849	3.07103573849325	3.14538317159363	-0.320451438527052	0.603163759186011	0.82798336062449
Merged-chr10-60245181-4	chr10	60245062	60245262	+	987.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25902.0	NM_016803	53374.0	Mm.12866	NM_016803	ENSMUSG00000057337	Chst3	C6ST|C6ST-1|GST-0	carbohydrate (chondroitin 6/keratan) sulfotransferase 3	protein-coding	4.70968918897966	4.83665949327668	4.54877129736185	4.58957579248028	4.96184294518794	4.76537090871462	4.39368455455997	4.74472070042919	0.147190337276538	0.682353186756609	0.869765585685259
Merged-chr8-119838970-3	chr8	119838883	119839083	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	1596.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	5.07994089135784	5.15895101437527	5.22272056720072	5.23647213020722	5.75738568782011	5.3327256600404	5.6426706977821	5.96030577761662	0.897573767213189	0.0019786366456108	0.0232142649071738
Merged-chr13-91682961-3	chr13	91682866	91683066	+	707.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 9 of 15)	intron (NM_001360776, intron 9 of 15)	-58555.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	3.02205930718078	3.24947339202945	3.08981990855781	3.03756540946553	2.88453789310253	3.3304324417354	3.36920994043317	3.70455241014415	0.915364889607662	0.127543218269536	0.397369460390093
Merged-chr2-21205315-3	chr2	21205223	21205423	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027728)	promoter-TSS (NM_027728)	42.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	5.8630559817657	5.8916492293389	5.39743844793386	5.40125785142725	6.21991961230876	5.9926034106714	6.02449851497654	5.78903875621766	0.604813479481458	0.029860088227621	0.166725072164562
Merged-chr10-67766344-2	chr10	67766244	67766444	+	832.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146318.0	NM_178679	216049.0	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	3.23962445003817	3.12969969459378	3.11886336068397	3.16000348218978	3.54981224236775	3.22882730571313	3.28381770679059	3.23835976587744	0.659738648203332	0.219616411592739	0.527237902147106
Merged-chr7-101379856-4	chr7	101379681	101379881	+	970.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	1659.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	4.04441032773109	4.43465917595851	4.33582414351918	4.44600421171763	4.23663883194508	4.58956990795306	4.18059041251382	4.37574093135968	0.0334186666806534	0.933383594107497	0.975967471696899
Merged-chr6-122560548-4	chr6	122560437	122560637	+	951.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009645, intron 2 of 4)	(CA)n|Simple_repeat|Simple_repeat	6728.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	4.49538955733286	4.5465975783523	4.53706005210799	4.51746549704728	4.70000371935126	4.583508802497	4.47574189745144	4.36246793151036	0.0469391499839443	0.895846481962555	0.960979922829742
Merged-chr4-129069039-4	chr4	129068919	129069119	+	922.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	10748.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	4.91887923035972	4.66299909305456	4.12925723505757	4.09612908001814	4.84392790195763	4.9598151426887	4.54208329188553	4.43106122720187	0.47971736816143	0.26338912041973	0.575385145700394
Merged-chr9-78022410-4	chr9	78022297	78022497	+	887.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-29561.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	3.80967809473147	4.31663795347451	4.58764964316934	4.1508170934081	4.2310853427436	4.45016401815893	4.2153382977513	4.1376855873042	0.0491439760401088	0.909370328100244	0.966313685692304
Merged-chr12-16881915-4	chr12	16881828	16882028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13050.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	6.78646754262652	7.33323239219258	7.08413949875054	6.67985609304114	7.15790019404314	7.69259759744038	7.1949759800866	7.03020218877031	0.409625704734964	0.0924717557171018	0.332678650502279
Merged-chr15-55388288-4	chr15	55388194	55388394	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 13 of 47)	intron (NM_181277, intron 13 of 47)	80544.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	5.12369726138408	4.69912547807975	5.35860377017165	5.24924793890383	4.8187977195677	5.29790408669182	5.30471286495221	4.79357875209748	-0.11880869509021	0.736824246439749	0.896086114515881
Merged-chr12-112679256-3	chr12	112679221	112679421	+	979.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001100460, intron 1 of 1)	CpG	481.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	3.84936552470352	3.45870033515433	3.98927076448371	3.70539498522941	3.74564418599542	3.92043040874112	3.88110690701602	3.79767197802689	0.22441127570904	0.630536499121573	0.84289819838062
Merged-chr1-38013325-4	chr1	38013203	38013403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 1 of 23)	intron (NM_198303, intron 1 of 23)	15293.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	6.19304836134353	6.23330460413889	6.34576646743365	6.55119912805854	6.44048406629889	5.77094356236409	6.38236632795933	6.46027369855822	-0.0729632433827518	0.777070873969895	0.913034573074491
Merged-chr18-53951280-4	chr18	53951189	53951389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 12 of 12)	intron (NM_152809, intron 12 of 12)	89176.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	5.40919738735161	5.65139662350652	5.65115077888765	5.49460589566507	5.22217821171219	5.55569407034331	5.32327097465406	5.59747818858318	-0.224597169487103	0.425631460045593	0.717099547779428
Merged-chr4-47050410-4	chr4	47050288	47050488	+	663.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024136, intron 1 of 14)	intron (NM_001024136, intron 1 of 14)	6918.0	NR_151464	75691.0	Mm.86866	NM_001024136	ENSMUSG00000066191	Anks6	2210417J20Rik|Ankrd14|Gm635|SamCystin|Samd6|b2b1801.1Clo	ankyrin repeat and sterile alpha motif domain containing 6	protein-coding	3.43426645794266	3.26519739471061	3.54568260031392	3.4209628738049	3.77882882966006	3.54959814748232	3.36349801736778	3.69367342790737	0.632585390779245	0.208774996051137	0.513115323678537
Merged-chr4-133625019-3	chr4	133624890	133625090	+	860.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 2 of 7)	intron (NM_001017968, intron 2 of 7)	8439.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	4.70203879020696	4.76578829808785	4.47040242654713	4.81844931995206	3.07893908987994	3.46561366398785	3.40578239458078	3.33610941156069	-6.06404474057449	7.03581065979492e-10	4.65862294840505e-08
Merged-chr10-81411823-3	chr10	81411716	81411916	+	910.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152732)	TTS (NR_152732)	2241.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	3.88909987447817	3.80485723487859	3.6523492709088	3.66219972324549	3.68506696465704	3.59886721993205	3.41317727094731	3.5410480854415	-0.579142023299355	0.232480554400814	0.54206877130722
Merged-chr16-32547762-1	chr16	32547662	32547862	+	795.75	f0_balb.idr	Intergenic	Intergenic	51481.0	NM_199309	245308.0	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	3.61734500844546	3.42644269787194	3.87658094417657	3.51813116612682	3.13526230165758	3.20606139785227	3.15318469439991	3.22781770162862	-1.61260654319801	0.00409362791908018	0.040803856834086
Merged-chr4-135300475-4	chr4	135300380	135300580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-27720.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	5.67722198968759	5.54952482201203	5.54233747997745	5.6412594644082	5.63786285809281	5.87853019378043	5.92426775072881	5.95050162586226	0.393358348487397	0.126186341798578	0.394718418935663
Merged-chr2-120623153-3	chr2	120623049	120623249	+	889.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13554.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	4.41087246322186	3.96974301063586	3.99402876990829	4.23827198379037	4.3764507421559	3.70988353769029	3.87587263319992	4.08775791797313	-0.306944838142153	0.514189611330716	0.776911645062715
Merged-chr2-84618841-4	chr2	84618735	84618935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355064, intron 5 of 18)	MIRc|SINE|MIR	30645.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	5.25302933154625	5.70569868723209	5.8115892145172	5.61188707435258	5.40383414933229	5.39803059864809	5.32379612567779	5.40690321346528	-0.397967956759632	0.161376633732012	0.450120592986044
Merged-chr10-91154123-4	chr10	91154064	91154264	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080129, intron 4 of 8)	intron (NM_001080129, intron 4 of 8)	16386.0	NM_001283048	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	3.65063886831994	4.13109671212363	4.20468490192234	3.94921911642468	4.32676333426795	3.83176830776576	4.05772390709846	3.76870372440964	0.0727022268642775	0.877931107151913	0.954314763971155
Merged-chr11-110727842-2	chr11	110727734	110727934	+	662.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-240199.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	2.64900327147042	2.56089938998546	2.82030751148096	2.91415196773254	2.42826914625479	2.40200763199027	2.44533184532007	2.37817004901577	-1.94079960484216	0.0108631262019574	0.0837822580917896
Merged-chr4-41773684-4	chr4	41773588	41773788	+	969.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154591, intron 2 of 4)	CpG-9830	413.0	NM_001361246	20301.0	Mm.335946	NM_011336	ENSMUSG00000073888	Ccl27a	ALP|AW558992|CTACK|CTAK|Ccl27|ESkine|ILC|PESKY|Scya27|Scya27a	chemokine (C-C motif) ligand 27A	protein-coding	5.40041860789805	5.17668747446041	5.46906525463895	4.86979201653147	6.41075038242537	6.75371024986981	6.82798775542982	6.69275735130575	2.31536036813388	3.48700493820583e-18	9.09163093393967e-16
Merged-chr10-75764363-4	chr10	75764267	75764467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172549)	promoter-TSS (NM_172549)	-10.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	8.48526248809462	8.41022953948598	8.33772343837265	8.69464288351543	8.72673486403577	8.56526661250689	8.74026681141919	8.60506648844975	0.209313149621377	0.190904001276787	0.490311892807621
Merged-chr2-93045647-4	chr2	93045553	93045753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177536, intron 1 of 6)	CpG	491.0	NM_001177536	100042784.0	Mm.102816	NM_001177536	ENSMUSG00000075028	Prdm11	8030443D09Rik|AA163972|Gm707	PR domain containing 11	protein-coding	7.75524255809695	7.8161429411257	7.6116835689337	8.01791282850346	7.81478425950419	7.98139156915339	8.12604783155167	7.82924277593931	0.158534219785474	0.382283340161307	0.684352653840237
Merged-chr2-6674580-2	chr2	6674481	6674681	+	582.0	f0_balb.idr|f0_c57.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	47081.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	3.74603211722941	3.69809443901677	3.74655201975028	3.62778354865637	3.87244422822553	3.91827883392461	3.92477933121278	3.79615183025984	0.529841655873479	0.227944721285799	0.536696679448311
Merged-chr2-170121441-3	chr2	170121345	170121545	+	891.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159683, intron 2 of 6)	intron (NM_001159683, intron 2 of 6)	9775.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	3.83048401033751	3.67841840564195	3.83105872455909	3.85249856701424	3.47800240161949	3.56642556932477	3.61384595947333	3.73134885417706	-0.642772502867966	0.172513196814569	0.465990544422004
Merged-chr11-49236062-4	chr11	49235962	49236162	+	890.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8129.0	NM_010794	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	4.41289812246092	4.15103832491557	4.41359054453876	4.7136921630956	4.35847075009454	4.09255469646634	4.4343240801436	4.53038997159981	-0.20710415851284	0.610804083805418	0.831957286562552
Merged-chr6-5038219-3	chr6	5038118	5038318	+	628.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	MTA_Mm|LTR|ERVL-MaLR	134898.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	3.45713350733455	3.45276477114012	3.60609409117961	2.7932426968271	3.37410844615545	3.14010580375949	3.1539510183928	3.50691269274021	-0.211182636929604	0.735872275521803	0.895714951678205
Merged-chr5-121845725-6	chr5	121845612	121845812	+	948.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3285.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	3.71463047934028	3.95821599636715	4.29011053713007	3.71717811556343	3.6176633531825	3.77800778354781	3.52401953824661	4.01051933321817	-0.55424185811187	0.265230640550958	0.576982022120313
Merged-chr12-28733418-3	chr12	28733256	28733456	+	892.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161410, intron 3 of 11)	B1_Mm|SINE|Alu	17038.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	3.15043312154022	3.97643105239139	3.41865134968477	2.70168399057218	3.68677870596443	3.76561599394333	3.85846499638345	3.35456504388902	0.807723785262819	0.234645339033161	0.544494379182414
Merged-chr11-87662572-4	chr11	87662476	87662676	+	946.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172448)	promoter-TSS (NM_172448)	-511.0	NM_172448	207742.0	Mm.440230	NM_172448	ENSMUSG00000034177	Rnf43	4732452J19Rik	ring finger protein 43	protein-coding	4.04948532144904	4.66443574561424	4.05004136015603	4.5717269832136	4.39460289767421	4.17491934078584	4.55578047644776	4.24835644607095	-0.0595384461112987	0.890099429115859	0.958849035710418
Merged-chr1-133163913-4	chr1	133163816	133164016	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	32750.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	5.05135358701459	5.07696370330742	4.87093203900398	5.3818949810167	4.81375398788432	4.65098846232974	5.37647307606801	5.32108043748686	-0.0892724174399881	0.804957060715188	0.925129391837088
Merged-chr17-15803652-4	chr17	15803571	15803771	+	955.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22915.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	4.5589483217321	4.32913721183465	5.09888692588856	5.22124786045261	4.7834641960184	4.9765530740928	4.62467249141134	4.76261637357177	-0.156796778034947	0.695641038450795	0.876805160171895
Merged-chr5-4595205-4	chr5	4595099	4595299	+	721.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163017.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	4.8855310207057	4.24336377341126	5.1452473573216	5.15203901270212	4.11254213426257	4.06884304446643	4.45372472947177	4.47143313061463	-1.38359233615423	0.00144677204077066	0.0181149416205779
Merged-chr2-30928501-4	chr2	30928392	30928592	+	890.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24509.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	4.12876671085357	4.814598387075	4.41106506058734	4.26206160979381	4.2646974728457	4.49765768578175	4.16310462861222	4.52875670702101	-0.140151055215713	0.73565504150511	0.895620853939579
Merged-chr3-144586852-4	chr3	144586764	144586964	+	852.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053102, intron 2 of 4)	intron (NM_053102, intron 2 of 4)	16437.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	3.79493377480114	4.02513835296476	3.84519255599367	3.08818949767023	3.92191374879193	4.15338103191065	3.61941890729599	3.23823602285705	0.0957111321307283	0.875563663008124	0.9532510799291
Merged-chr6-115759718-4	chr6	115759622	115759822	+	893.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144805)	promoter-TSS (NM_144805)	-723.0	NM_144805	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	4.18900391898216	3.71433627890944	3.85359804174358	4.44900139902654	3.94291827761657	3.91831116201797	3.9914827621376	4.1869929387941	-0.23063463575416	0.626809556668501	0.84078253767509
Merged-chr8-126588808-4	chr8	126588724	126588924	+	953.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164598, exon 2 of 2)	3' UTR (NM_001164598, exon 2 of 2)	4612.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	4.30935523604004	4.93519990263055	4.90013252624914	4.53281650835575	4.72289037589233	4.43951231404411	4.51753381845007	4.44890309531321	-0.315545293533661	0.414603359919144	0.70912924922228
Merged-chr1-149940411-4	chr1	149940305	149940505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	-17966.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	7.53638776776465	7.24121667540649	7.26207404860772	7.39395633969115	7.19597427565484	7.29276526615991	6.88711937267126	7.04937341935997	-0.335650601529562	0.0844318018764706	0.316133508898561
Merged-chr16-33891768-4	chr16	33891667	33891867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	62102.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	7.16967195501437	7.15130657891537	7.12522131798562	7.34072884712482	7.1012936809601	7.11460269274323	7.05417050787522	7.0606855391925	-0.172436087308899	0.34769040328194	0.655546119710951
Merged-chr7-28810746-4	chr7	28810645	28810845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177301)	promoter-TSS (NM_177301)	-145.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	8.78523074004788	9.00926540586263	8.79880109514513	8.7717549656109	8.73517177296028	8.9928952302948	8.7830970070649	8.67893440785824	-0.0541506430399753	0.726493586996263	0.891094191532232
Merged-chr2-131106169-3	chr2	131106078	131106278	+	991.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19413.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	4.94634651157862	5.11187858555708	5.56763602699736	5.38041461666839	4.01124175472525	3.85669960089288	3.92310133011595	4.0018539224888	-3.16524291685488	2.39606253605373e-12	2.39872482776046e-10
Merged-chr12-100520972-4	chr12	100520863	100521063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033213)	promoter-TSS (NM_001033213)	-141.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	5.04371634677786	5.36022832249925	5.26152630606701	5.01599935424309	4.93867554982723	5.04014738412224	5.2065911267943	4.55536097695095	-0.41721645223413	0.216776636751965	0.523492594652013
Merged-chr6-129333983-4	chr6	129333887	129334087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2206.0	NM_199034	381816.0	Mm.46114	NM_199034	ENSMUSG00000047720	4922502D21Rik	Clec2m|Gm1074|SPATA78	RIKEN cDNA 4922502D21 gene	protein-coding	7.15480423732596	7.1810336453963	6.77505210342225	7.33420946561742	6.95861321546741	7.04162560665099	7.15353264460224	7.41539915532906	0.0162226252808951	0.940342888486061	0.97856206171946
Merged-chr6-66958679-4	chr6	66958582	66958782	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	61791.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	4.82221692482452	4.87353231989887	4.74951596404913	4.95114117524611	4.92049321111571	4.37734941078306	4.83487938635878	4.58558214543786	-0.306808103808189	0.38709794197235	0.688085997159096
Merged-chr10-98684328-4	chr10	98684249	98684449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-230293.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	6.86115326422007	6.91579732186525	6.76435895962741	6.77851340854682	7.07368490616032	6.94098513705877	6.85408317505161	6.51985211700923	0.0582415662440068	0.783473262089394	0.915649203519514
Merged-chr5-64900778-2	chr5	64900678	64900878	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31921.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	3.50333997437199	3.27606674666196	3.50382944853794	3.34980897994546	3.52199038266425	3.67287046914206	3.25990407086098	3.50184985722592	0.307248013493767	0.547112921703609	0.796705209777848
Merged-chr11-120042627-4	chr11	120042491	120042691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198787)	promoter-TSS (NM_001198787)	-810.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	5.19681546684044	5.41288837370006	4.79814575333036	5.1088610553865	5.3105763338654	5.05907566562283	4.93447173501727	5.49728424291446	0.137159587662549	0.679236441524809	0.868329272937217
Merged-chr1-88587562-4	chr1	88587463	88587663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36046.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	9.26393913273517	9.16431184871294	9.15493840488318	9.17123705223031	9.0730643244529	9.15362062369167	9.30992115957699	9.32257089580346	0.0352809271620926	0.803734498911492	0.924336354580751
Merged-chr3-139042168-4	chr3	139042068	139042268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 2 of 13)	MTEb|LTR|ERVL-MaLR	33033.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	5.93276359504625	6.03844708829468	6.25299784199799	5.82086307777002	6.23219126586284	5.94043310865902	6.01203819698712	5.76035106923666	-0.0013407252972767	0.995880132624949	0.998543856884531
Merged-chr13-52036532-4	chr13	52036449	52036649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60192.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	5.71710496331536	5.44855775958884	5.13131510297248	5.36774205652622	5.63640671170214	5.8187711990138	5.45914999671962	5.66620702883383	0.37849120587766	0.184171220044166	0.481465899986865
Merged-chr7-104400887-4	chr7	104400769	104400969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42223.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	7.02694119437087	7.27962404493366	6.95384659970696	6.90465706862412	6.90641133884342	6.84617281543274	6.85343694022634	6.63133957998312	-0.318414885766626	0.120722178963447	0.384680506725841
Merged-chr15-99393378-4	chr15	99393292	99393492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171035, intron 1 of 9)	CpG	173.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	5.71208153939445	5.60138404030687	5.63530036518683	5.78155428424675	5.90051085885487	5.81057209912408	5.7089938844822	5.82889677490242	0.206375155106767	0.411916546398551	0.707251250870862
Merged-chr17-26535487-4	chr17	26535417	26535617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25995.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	8.61590216338603	8.62525206264833	8.80449507833588	8.68353122537975	8.60829375572348	8.66938093421208	8.83743957837179	8.67878626429655	0.0197569086883437	0.89390439815308	0.960450328240811
Merged-chr4-121017266-4	chr4	121017162	121017362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133716)	promoter-TSS (NM_133716)	-15.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	6.75325670039464	6.68523472728619	6.7103271307592	6.21155133238341	6.79468166135915	7.1054211902133	7.12241609916837	6.69049314070167	0.49206170883326	0.0373348221125996	0.192806740415927
Merged-chr8-70612014-4	chr8	70611880	70612080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3666.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	7.20533175441493	6.94470072115914	7.51934726512072	7.23805969022886	7.26714145819785	7.2305404896481	7.28663315170674	7.13310579163948	-0.0102843772441755	0.958779917058448	0.985273886036285
Merged-chr17-71118202-4	chr17	71118099	71118299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 33 of 36)	intron (NM_001083934, intron 33 of 36)	-65333.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	5.89566536561669	5.76297839305133	5.98674044522856	6.5908139881701	5.67004295737653	5.70038408508873	6.1179300643853	5.98245620158029	-0.384687784451801	0.204936985503716	0.508442303630846
Merged-chr11-4333216-3	chr11	4333117	4333317	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66421.0	NM_001039537	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	5.29234246779162	5.31808720544338	5.60896508169666	5.42726269425802	4.36903743159456	4.88895895942296	4.54916402480846	4.51787317029464	-1.68264877100209	8.70219889810483e-07	3.08780565986143e-05
Merged-chr6-55017115-4	chr6	55017006	55017206	+	917.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20895.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	4.94859177585158	4.48365098114259	4.49667161469442	4.52529268841194	4.41016149881339	4.39663091724873	4.51698280728117	4.45124552056808	-0.397899054659722	0.286800300237601	0.598454467247327
Merged-chr6-42227470-1	chr6	42227370	42227570	+	555.0	f0_balb.idr	Intergenic	Intergenic	12142.0	NM_001001453	387515.0	Mm.377922	NM_001001453	ENSMUSG00000051917	Tas2r144	Tas2r40|Tas2r44|mt2r33	taste receptor, type 2, member 144	protein-coding	3.2556702794057	3.13387290010009	2.95702212769867	3.01269418568878	3.11794812503056	3.25566651315572	3.13282317174358	3.08346170581429	0.228399533636181	0.682928652179499	0.870120977580005
Merged-chr1-131153159-4	chr1	131153048	131153248	+	965.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136070)	promoter-TSS (NM_001136070)	-59.0	NM_001136070	16865.0	Mm.276294	NM_010709	ENSMUSG00000026427	Eif2d	D1Ertd5e|Lgtn	eukaryotic translation initiation factor 2D	protein-coding	4.75588799070192	4.99225861734729	4.91193421518842	5.1969262737862	5.34862408038868	4.85027467132205	4.99290483362887	4.94468742129437	0.13827353370299	0.684000865433972	0.870520984135401
Merged-chr11-49712807-4	chr11	49712692	49712892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_212484)	promoter-TSS (NM_212484)	-70.0	NM_212484	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	8.09136047580201	8.00901209868065	7.70514618199099	7.9547007175121	8.04153045596778	8.16535211140786	8.18501743152403	7.86048687571668	0.153850218981677	0.377677131748845	0.680384717186379
Merged-chr19-19111363-3	chr19	19111275	19111475	+	832.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001043354)	promoter-TSS (NM_001043354)	-179.0	NM_001043354	225998.0	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	3.65907089908067	3.99463228770535	4.20996585674852	4.23578301077285	4.13626878545306	3.95446010836589	3.8720051624643	3.93666528391625	-0.188918516655234	0.678628334850628	0.8681208945003
Merged-chr7-49046512-4	chr7	49046431	49046631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	87458.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	6.19730496573882	5.80744043537436	6.27440755732504	6.65064696105289	6.20640092073261	5.76341969356653	6.278364017686	6.4092479442054	-0.142144555067595	0.621269930874498	0.837757076551181
Merged-chr7-105726590-4	chr7	105726494	105726694	+	884.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	9990.0	NM_025897	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	4.7003509810226	4.32439109934757	4.30454683670987	4.50156693438509	4.40083934171678	4.17427784146248	4.71150647224393	4.30192585888759	-0.122289364343565	0.756173690064303	0.904159100355911
Merged-chr2-35337661-4	chr2	35337550	35337750	+	962.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013515)	promoter-TSS (NM_013515)	-641.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	5.20009719116918	5.21100166763072	5.73038840356421	5.88603777483023	5.46178946310507	5.16700930405747	4.9243181738619	4.86223180042727	-0.747425158923573	0.0348629107743687	0.184862410839365
Merged-chr4-16013906-4	chr4	16013805	16014005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145950)	promoter-TSS (NM_145950)	-17.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	8.58656459972799	8.51589392123373	8.5502780000356	8.87588139280273	8.46496422712444	8.65417958931863	8.74882294150844	8.35502666149297	-0.105465601839281	0.542666504857663	0.793917205662524
Merged-chr8-117322139-4	chr8	117322001	117322201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-27069.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	5.84201935238176	5.76412695772185	6.07161550254143	6.27971107718432	6.03522038590364	5.97001591216536	6.25060130110096	6.37997929968105	0.223271889150166	0.396038322319768	0.695027287270366
Merged-chr12-24952356-4	chr12	24952169	24952369	+	781.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026037, intron 9 of 12)	intron (NM_026037, intron 9 of 12)	-22663.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	2.95608838295838	2.85807771445708	3.13072447490146	2.6044375662216	3.06041921618091	3.00236110485852	2.9457626831749	3.07348005078052	0.567546484493948	0.36210954402507	0.66735526990214
Merged-chr14-48121327-3	chr14	48121229	48121429	+	881.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033602, intron 1 of 5)	CpG	460.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	3.96968590153221	3.67047475015809	4.60007587229183	3.92533084842201	3.26998121888753	3.60108824955022	3.40107830857168	3.60336010499168	-1.88935817823406	0.00066445492915274	0.00967776496872577
Merged-chr3-61340306-4	chr3	61340192	61340392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24215.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	5.41809255766083	6.36770187580116	5.47647072628728	5.10465257081821	5.80951156921028	5.37585403449622	5.36204831827381	4.63925503814443	-0.571121970635489	0.36415690933548	0.669084270768976
Merged-chr17-71869722-2	chr17	71869653	71869853	+	702.083374	f0_balb.idr|f1_balb.idr	exon (NM_007439, exon 29 of 29)	exon (NM_007439, exon 29 of 29)	87806.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	2.3870229677926	2.45363011120472	2.56228986030474	2.63069747243501	1.94709256478454	2.04581468237011	2.02693742081366	2.03001963726342	-5.43476963787725	5.31254772822162e-06	0.00015658046987457
Merged-chr1-143814125-4	chr1	143814012	143814212	+	918.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	36834.0	NM_019562	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	4.27471425514326	3.97130681805808	3.85167003541063	4.43032154456134	4.31257077853483	4.61479496379384	4.53661909708529	4.44197543228	0.722311006254805	0.0906413893013031	0.328802540468732
Merged-chr10-57492260-4	chr10	57492158	57492358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008297, intron 1 of 11)	RLTR20D|LTR|ERVK	5873.0	NM_008297	15500.0	Mm.261395	NM_008297	ENSMUSG00000019878	Hsf2	AI661205	heat shock factor 2	protein-coding	6.32262258770843	6.59701505039179	6.88519919927105	6.63574934373078	6.6370232262568	6.42128058828911	6.86271568877714	6.5839951456291	0.0178494923209695	0.937598410838828	0.977363579296412
Merged-chr4-127021177-4	chr4	127021048	127021248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045010)	promoter-TSS (NR_045010)	-153.0	NR_045010	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	8.2906620025394	8.5547482988846	7.87670023763841	8.21993327737562	8.39977541543115	8.45282528802069	8.22480027131909	8.2350678177576	0.0922917775515192	0.623326776996765	0.838941930944268
Merged-chr15-59620107-4	chr15	59620028	59620228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28526.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	5.1860791251812	5.62333767568528	5.40830370373257	4.97031310991338	5.61599468805772	5.86491265047881	5.2282641912643	5.46124373304075	0.444575855891173	0.166723123907379	0.458086359785506
Merged-chr10-111011059-3	chr10	111010957	111011157	+	750.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172554)	promoter-TSS (NM_172554)	-991.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	3.49548441427087	3.16913475983874	3.2747769993261	3.57531498503678	3.32428759768443	3.18964360592478	3.53057255168705	3.38831936492301	-0.119463678391203	0.826233443969155	0.933395818056414
Merged-chr5-36830668-4	chr5	36830547	36830747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008550)	promoter-TSS (NM_008550)	2.0	NM_008550	17160.0	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	6.90085457892097	6.55309148621717	6.68083000296334	6.6660558969096	6.63591677101757	6.73054873168535	6.84157758598844	6.69109745903806	0.0321079014706541	0.875775026504432	0.953343358207453
Merged-chr10-117148021-2	chr10	117147937	117148137	+	901.75	f0_balb.idr|f0_c57.idr	intron (NM_177798, intron 1 of 9)	CpG	437.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	4.24934556205065	4.37574185240738	4.68718709641646	4.50312289393227	4.56584508903294	4.7437578252841	4.73622657178529	4.82403963299324	0.544419676270923	0.130506841857711	0.402130363128451
Merged-chr10-99986924-3	chr10	99986817	99987017	+	782.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28904.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	3.6056213208002	3.5709765731171	3.66010071212205	4.05530549305347	3.52160636956078	3.33849232280455	3.92512935693205	3.65804994729848	-0.376979202432371	0.475169912625545	0.752111404319515
Merged-chr7-101352640-3	chr7	101352533	101352733	+	936.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	4564.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	3.80165675832126	3.69633354039369	3.89646172884716	4.05767026314914	3.46042215699042	3.64747369321722	3.83347324548335	3.40326521289915	-0.876457270995863	0.0764121070528168	0.298608407545507
Merged-chr6-84032781-4	chr6	84032699	84032899	+	858.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310152, intron 1 of 53)	RLTR19-int|LTR|ERVK	13413.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	4.03085145891253	3.7368762942638	4.12234597300039	3.99640786900914	3.94593772482679	3.63813460837419	4.26612360056083	4.20439884262107	0.157104161822465	0.732157556923904	0.893930797678999
Merged-chr19-32787569-4	chr19	32787457	32787657	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 2 of 8)	MTC|LTR|ERVL-MaLR	29980.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	4.83955337177328	4.4778517300572	5.2396244973825	4.90004231485723	5.15809007278506	5.09152765743493	5.1553966850644	5.20712292523238	0.513807413753963	0.126249223029259	0.394853444200069
Merged-chr7-120883918-7	chr7	120883814	120884014	+	896.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267710, intron 6 of 17)	B1_Mus2|SINE|Alu	32725.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	3.8663980116091	3.38434764983408	3.91175089598105	3.78718550720065	3.49815679912659	3.73372164717769	3.65539390628806	3.61391344140863	-0.395681354055335	0.423139122852005	0.715083919976326
Merged-chr3-142497438-4	chr3	142497347	142497547	+	847.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153564, intron 1 of 10)	intron (NM_153564, intron 1 of 10)	513.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	4.29854888608811	4.54671983464994	4.57337975771764	4.16280907925974	4.05142065235737	4.33579883290701	3.99008792839994	4.2060546289393	-0.617365289775447	0.136046294698031	0.410486305822995
Merged-chr9-110742394-3	chr9	110742304	110742504	+	636.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001083936, exon 1 of 14)	5' UTR (NM_001083936, exon 1 of 14)	206.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	3.88477719864883	3.76704037734425	3.63636567465329	3.66869733730757	3.82019945978426	3.44192937718731	3.62231814204965	3.83700613190659	-0.125482457232169	0.793057653166276	0.919830055805412
Merged-chr6-125010185-4	chr6	125010059	125010259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347452)	promoter-TSS (NM_001347452)	-222.0	NM_001347452	269800.0	Mm.108677	NM_175557	ENSMUSG00000038346	Zfp384	BB163993|C130073D16Rik|Ciz|NP|Nmp4	zinc finger protein 384	protein-coding	5.60690653242284	5.74581362172871	5.90572034499024	5.63278889626208	6.19993069928449	5.78490915302442	5.85341237823721	5.78589949158424	0.342364173028952	0.193596129078248	0.493746779592986
Merged-chr17-63422838-4	chr17	63422745	63422945	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 4 of 8)	intron (NM_015794, intron 4 of 8)	77735.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	5.3482997934544	5.49473560308981	5.25280940462487	5.53181087721342	5.48397226165114	5.89370708650769	5.54734738480287	5.34551527313756	0.266413056039105	0.356270908628205	0.662747123269611
Merged-chr7-141294872-3	chr7	141294774	141294974	+	718.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007878, exon 4 of 4)	3' UTR (NM_007878, exon 4 of 4)	2868.0	NM_007878	13491.0	Mm.41075	NM_007878	ENSMUSG00000025496	Drd4	AW125663|D4R|Drd-4	dopamine receptor D4	protein-coding	3.65780140404546	3.37920378128001	3.50304927220029	3.49304311111063	3.4874894948704	3.56112652753885	3.5427908209884	3.55503832054451	0.0863568420891432	0.859039282512629	0.946584263576172
Merged-chr2-127137274-4	chr2	127137172	127137372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3318.0	NM_144818	215387.0	Mm.29786	NM_144818	ENSMUSG00000034906	Ncaph	A730011O11Rik|Brrn1|CAP-H|HCAP-H|mCAP-H	non-SMC condensin I complex, subunit H	protein-coding	6.08116218660624	5.8299546152237	5.82544600769312	5.91986423044099	6.05857107280782	5.55512786647724	5.69777889050041	5.77294699696203	-0.188366865590267	0.475275192638736	0.752170333885464
Merged-chr4-95180597-3	chr4	95180496	95180696	+	897.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-128374.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	4.54630665995743	3.90787374543924	4.0672455112968	4.16823531992814	4.14246118734825	3.9785300794118	4.09714735015699	4.06482779503765	-0.294343487647023	0.495691370691007	0.765874409085869
Merged-chr2-26493580-2	chr2	26493445	26493645	+	698.25	f0_balb.idr|f0_c57.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	10277.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	4.10956520632441	4.36681612997733	4.28579688548335	3.75868016679595	4.30841626063055	4.08429406880769	3.89139978897496	4.10768129308247	-0.0692308058118604	0.878224642437037	0.954456681704503
Merged-chr11-75168206-4	chr11	75168078	75168278	+	977.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098203)	promoter-TSS (NM_001098203)	-26.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	4.37995530625851	4.11315552788534	5.07523269811388	4.57687083644283	4.69092457115291	4.51239046884047	4.86982422462891	4.92272094652497	0.373938172491979	0.363278310713347	0.668453503561392
Merged-chr13-104228871-4	chr13	104228782	104228982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021790)	promoter-TSS (NM_021790)	-38.0	NM_172807	238831.0	Mm.98910	NM_172807	ENSMUSG00000021713	Ppwd1	4632422M10Rik|A330090G21Rik	peptidylprolyl isomerase domain and WD repeat containing 1	protein-coding	8.41905294750969	8.56627344033827	8.36708721347019	8.47864259296454	8.58259689648282	8.39399107929799	8.5379722350715	8.65204693339451	0.107124844935733	0.480009778242356	0.75564081252342
Merged-chr3-96026839-3	chr3	96026708	96026908	+	734.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013841, intron 13 of 14)	RMER6A|LTR|ERVK	-30969.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	3.60271736787961	3.515135150348	4.04956272652701	3.98931141122199	3.37012355123923	3.19959368532331	3.5346631622331	3.43014570687736	-1.3977447200609	0.0100295302447623	0.0790840737002259
Merged-chr17-78419369-4	chr17	78419243	78419443	+	963.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1191.0	NM_001285940	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	5.83262704688261	5.80984422774536	6.23229335546868	6.50543110708882	5.89182527719996	5.47500148784212	6.08809127341589	6.05471598725584	-0.380668446494405	0.200776724166924	0.502930308662197
Merged-chr19-53329436-4	chr19	53329340	53329540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360345)	promoter-TSS (NM_001360345)	27.0	NM_001360345	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	7.44077956347405	7.4818418556756	7.64115413327304	7.43444158636886	7.75998987903242	7.69538564658725	7.67661758926734	7.39706054108599	0.191980077332831	0.28268202605557	0.594868303890261
Merged-chr11-117958419-4	chr11	117958345	117958545	+	979.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10921.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	4.73251060176317	4.76541349573762	4.59220510561673	4.31348809447852	4.18402432473494	4.38065032307486	3.96836141059593	4.43040560678633	-0.830634050736438	0.0422166032207651	0.208415563923626
Merged-chr4-102518017-3	chr4	102517936	102518136	+	942.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-52024.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	3.1309298641876	3.41809464106469	3.13121217589468	3.6368016361994	4.063415155668	4.12278492382775	3.64475035431023	4.18887202066279	2.18464055477386	0.0304612728934966	0.168928939874265
Merged-chr3-19630269-4	chr3	19630165	19630365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14195.0	NM_001081281	381485.0	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	7.54629504707245	7.32045897092738	7.85966439024128	7.83225027005209	7.65869043312646	7.38278158111871	7.62301369639816	7.65526499614102	-0.099145261195061	0.617301346403737	0.835468348897191
Merged-chr11-71144848-4	chr11	71144754	71144954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004142)	promoter-TSS (NM_001004142)	-150.0	NM_001004142	195046.0	Mm.240227	NM_001004142	ENSMUSG00000069830	Nlrp1a	CARD7|DEFCAP|Gm14|Gm15|NAC|Nalp1|Nalp1a|Nlrp1|PP1044	NLR family, pyrin domain containing 1A	protein-coding	6.01183478144499	6.10467879293661	5.97155108564028	5.53300533752713	5.61991955945333	5.70023073917863	5.83188009455306	5.7624068883405	-0.292963955856428	0.288823020622715	0.600803227327521
Merged-chr1-131963041-7	chr1	131962943	131963143	+	984.68573	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001177628, exon 1 of 5)	5' UTR (NM_001177628, exon 1 of 5)	128.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	4.76617759856882	4.58673334010648	4.69516418268475	4.3623088101068	4.63155648568551	4.62683777392724	4.59749671814089	4.53513608504762	0.0135058654419646	0.970069120872215	0.989220067829449
Merged-chr6-125596386-3	chr6	125596299	125596499	+	823.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 10 of 51)	CT-rich|Low_complexity|Low_complexity	43451.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	3.48525361654689	3.54141383878789	3.53975089312303	3.44525956359612	3.50009272106891	3.54356066999113	3.62589224758251	3.30719660860993	-0.00123684506697084	0.998003647387074	0.999098488310496
Merged-chr3-129944023-3	chr3	129943932	129944132	+	783.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025779, intron 1 of 7)	intron (NM_025779, intron 1 of 7)	26174.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	4.05673987652122	4.0078461524284	3.75031562641348	4.227906594013	3.60154744186313	3.61587443321203	4.24635258138519	4.18439227600667	-0.224046410299074	0.652876855029519	0.854769822525583
Merged-chr18-52559074-4	chr18	52558991	52559191	+	830.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29224.0	NM_001286182	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	4.02498555615247	4.32232799500066	4.02554405536966	4.07770446278182	4.35516568267651	4.69074186217655	4.57216058833039	4.35986108793172	0.902851376355268	0.021253333120205	0.133292864851213
Merged-chr6-124898519-4	chr6	124898441	124898641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10341.0	NM_013488	12504.0	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	5.81072790400331	6.00681344699401	5.31265572763765	5.46798014058022	6.44512294583464	5.80732251638844	6.15597212320009	5.94574782804746	0.715758570232898	0.0158033710630526	0.108840653013742
Merged-chr10-94829583-4	chr10	94829491	94829691	+	824.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 20 of 30)	intron (NM_018797, intron 20 of 30)	114987.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	4.31674898928612	3.97730829559369	4.27598104010329	4.11021124628812	4.19020098811846	3.88711905158025	4.17026350349753	4.39354494728007	0.0131734740355758	0.974872772101953	0.990980963774884
Merged-chr6-83708299-4	chr6	83708203	83708403	+	837.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_075094, intron 1 of 2)	intron (NR_075094, intron 1 of 2)	2522.0	NR_075094	574519.0	Mm.487605	NR_002871	ENSMUSG00000085794	Vax2os	Vas2os|Vax2os1|Vax2os2	ventral anterior homeobox 2, opposite strand	ncRNA	3.73791545414305	3.90437043768794	3.98850076104948	3.6927479072403	3.91473359091081	3.54595020324387	3.97081829270047	4.11519089550542	0.215997125862282	0.641949875737196	0.848942478175454
Merged-chr4-137365837-4	chr4	137365747	137365947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8088.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	6.76344415370757	6.85241991287783	6.72202598208389	6.86802704774122	6.50934842284318	6.47476338393347	6.39786923040854	6.6581160700183	-0.424467343425826	0.0372142755289109	0.192435518915536
Merged-chr10-127171086-4	chr10	127170959	127171159	+	941.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008080, exon 10 of 11)	exon (NM_008080, exon 10 of 11)	5228.0	NM_001358578	14421.0	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	5.21232782413579	5.25934716730426	5.05868876412675	5.05205641210186	4.70884095374689	4.9817153387035	4.85952755535265	4.98778273139407	-0.518302857679668	0.102179250709768	0.350895782615458
Merged-chr17-36145257-4	chr17	36145170	36145370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033517, intron 1 of 3)	CpG	252.0	NR_033517	675325.0	Mm.75890	NR_033517	ENSMUSG00000038311	2410017I17Rik	-	RIKEN cDNA 2410017I17 gene	ncRNA	5.35597133081772	5.48077697207881	5.15661122526119	5.76937240311054	5.76734332971541	5.67687404351455	5.2993568426835	5.52619163548098	0.175277215301609	0.567827497231555	0.808331754798167
Merged-chr2-11712918-4	chr2	11712811	11713011	+	902.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271499, intron 1 of 6)	intron (NM_001271499, intron 1 of 6)	7199.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	4.26936113506528	5.06054807793217	4.26999546601093	4.25091073194051	4.91719876435141	4.97406813404389	4.25163672227839	4.31712609165359	0.313493659760202	0.494986270076285	0.765444126914769
Merged-chr1-180265076-4	chr1	180264974	180265174	+	997.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8774.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	4.8813841747529	4.6676680486726	4.95358027093764	5.15864997695519	4.73841413946509	4.94308982502695	5.17848959907109	5.01774815535342	0.0589516003660878	0.863040371264126	0.948462965894327
Merged-chr7-110616452-3	chr7	110616345	110616545	+	868.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-1525.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	3.27969606002444	3.32328663010034	3.70013934592107	2.9461960169884	3.47660971581747	3.26368533937881	3.59116951251495	3.45203245869859	0.412374920027691	0.472526932479941	0.750668694577904
Merged-chr2-127362619-4	chr2	127362500	127362700	+	981.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009633)	promoter-TSS (NM_009633)	-686.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	4.91433004949733	4.69562089477992	4.56847809706732	4.61227407070782	4.75206976503274	5.08451983119974	5.0477737888189	4.76882416858263	0.4537539392364	0.18180960103378	0.478446672285694
Merged-chr13-30612471-6	chr13	30612341	30612541	+	918.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2602.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	4.7492756479646	4.5703960861746	4.78452962498206	4.71792658265268	4.21006449546881	4.47099991407581	4.54092693567294	4.51789158748436	-0.618269275911661	0.08892082114547	0.325381910896163
Merged-chr13-89539447-6	chr13	89539377	89539577	+	876.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1159.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	3.22006828753504	3.45374027464869	3.47567839145693	3.42470865033652	3.79632775975556	3.59168720298789	3.72145941370442	3.82679126196839	1.07897719566336	0.0266877636850602	0.155171404291693
Merged-chr7-142393922-3	chr7	142393840	142394040	+	828.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6070.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	3.47302974185813	3.47009824162398	3.6507279126794	3.935438006575	3.83467191745411	3.97590831869604	3.52251236358817	3.98651397701847	0.522291959285717	0.306446405995516	0.618953739461277
Merged-chr15-78334633-4	chr15	78334636	78334836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	8746.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	4.48852145306409	4.46260658148706	4.31864454751396	3.79069703574432	4.47665490303577	4.77355897303979	4.25336228503845	4.44577333153522	0.508094969377059	0.238550408013612	0.548947761743878
Merged-chr6-83444103-3	chr6	83444025	83444225	+	749.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028382, intron 2 of 2)	intron (NR_028382, intron 2 of 2)	2370.0	NR_028382	320775.0	Mm.434334	NR_028382	ENSMUSG00000051844	B230319C09Rik	-	RIKEN cDNA B230319C09 gene	ncRNA	3.88659882949777	4.03854215845717	3.67737476553469	4.06438342055142	3.90789224844166	3.6099502794795	3.7714536889103	3.83563560956106	-0.41161860823234	0.373529034938947	0.677113210162732
Merged-chr3-69655210-4	chr3	69655104	69655304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	-56244.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	5.18816483618439	5.10023482206449	5.43323982502011	4.90426491022678	5.67481766964013	5.43045221065153	5.56121087650561	5.51000282959677	0.724277626931223	0.0141619941414516	0.100745985288764
Merged-chr8-79374591-4	chr8	79374499	79374699	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	24869.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	4.88974684889404	4.88013264051143	5.38336921671242	5.59346859073211	5.11483715211105	4.7629938569633	5.43472814461036	5.43281182545872	-0.0450825642772784	0.902602915293569	0.963848753135321
Merged-chr9-121372197-3	chr9	121372097	121372297	+	687.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357973, intron 1 of 5)	intron (NM_001357973, intron 1 of 5)	5239.0	NM_175114	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	3.84428796924083	3.64946920452519	3.69574629413416	3.73817888237071	3.80108789937274	3.81376493273774	3.45405718407629	3.74525759081919	-0.0564716415793242	0.904121778212405	0.964516711899835
Merged-chr7-80103673-3	chr7	80103596	80103796	+	694.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173011, intron 1 of 10)	intron (NM_173011, intron 1 of 10)	11654.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	2.99940960257687	3.08199256801397	2.99979864385654	3.02683707407887	2.85158767320415	2.77646491711304	2.73738065683854	2.99822527457841	-0.81666987544654	0.182643588934466	0.479259309030684
Merged-chr16-31755208-4	chr16	31755104	31755304	+	778.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252436, intron 1 of 22)	intron (NM_001252436, intron 1 of 22)	854.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	4.04946951394034	4.22905155712834	4.18776733975177	4.28928970492032	4.21412994652704	4.07165570475983	4.12526872732634	3.58968324179266	-0.435754080382886	0.331937455650677	0.643033398355047
Merged-chr5-122548825-4	chr5	122548715	122548915	+	858.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46590.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	4.61858456677061	4.23792442781961	4.65429120752775	4.90304447142207	3.84374862718098	3.86589504193955	4.23326694487434	4.38371243693914	-1.29762763344096	0.00347954910634502	0.0359047297536289
Merged-chr12-76615463-4	chr12	76615372	76615572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 15 of 35)	ORR1D2-int|LTR|ERVL-MaLR	-67547.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	5.83019184374857	5.72382743305971	5.83121506163169	5.89996293949157	5.75748751481958	5.93352364270792	6.07580772125674	5.80314091720711	0.103413064638743	0.678098124109611	0.867974866493993
Merged-chr19-32225336-3	chr19	32225230	32225430	+	952.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 4 of 9)	intron (NM_144792, intron 4 of 9)	-14317.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	3.97302173873888	4.01762178174861	4.11129759411106	4.257369667806	3.8588030095106	3.93940701825931	3.691975097519	3.97125727892971	-0.652784518445948	0.135839813757524	0.410243322164528
Merged-chr6-53573242-4	chr6	53573114	53573314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172728)	promoter-TSS (NM_172728)	-160.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	7.57473910357894	7.45032352958689	7.62637226584657	7.6173011955511	7.15707750480576	7.42198426469775	7.26277694625803	7.17071539052425	-0.426477974128873	0.0165371668811073	0.112404411901293
Merged-chr14-106668377-4	chr14	106668276	106668476	+	919.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-181856.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	4.67313064622751	4.53880195067688	4.81723625126954	4.60041895195932	4.82054996313864	4.45685282702605	4.49202198992609	4.63235138234073	-0.0746987483604722	0.834560264970927	0.936929006230221
Merged-chr12-76534963-1	chr12	76534863	76535063	+	939.0	f0_balb.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	1403.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	3.64337437447261	4.13844932041245	4.26293975515272	3.46637684135462	4.19848338975027	3.88197024666512	3.74549727710651	3.81291130508066	0.0331172292272574	0.949000792963704	0.981673120801678
Merged-chr10-86879379-3	chr10	86879278	86879478	+	849.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 44 of 68)	intron (NM_138673, intron 44 of 68)	100373.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	3.99444075364861	3.65936827512974	3.80527556111886	4.34480977057006	3.43455687061295	3.70099969570355	3.56983468378741	3.9013211650409	-0.978121235165693	0.0570428690981805	0.250277653919706
Merged-chr13-58484874-4	chr13	58484774	58484974	+	811.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81531.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	3.98050425728687	3.94898894222336	3.8791224126273	3.92921210324903	3.71647920503036	4.05405657817082	4.01165091999828	4.39243169878085	0.334575088006447	0.454924626139993	0.7386195247267
Merged-chr1-52366517-3	chr1	52366422	52366622	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133290.0	NM_001113383	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	4.62850797479921	4.23897671416247	4.6948556008433	5.32760616230505	3.23408555055074	3.67784218304152	3.46040244333142	3.47059581492336	-4.3458470919239	9.42323908833736e-11	7.23556348509994e-09
Merged-chr5-121220190-4	chr5	121220082	121220282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181421)	promoter-TSS (NM_181421)	-37.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	6.20353188039946	6.31728523287093	5.61866060397005	6.12597096558773	6.35357500262397	6.49188347458542	6.26656962073231	6.34765655984013	0.404853466352799	0.105574577614916	0.357740305629443
Merged-chr2-130501825-3	chr2	130501706	130501906	+	921.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	51528.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	4.58063283232665	4.31082651237388	4.5047693650793	4.88380451788622	4.06797097738822	4.15909190870456	4.22448855602655	4.50182642402986	-0.842698594114163	0.0397722262712856	0.201047318639574
Merged-chr5-99237347-4	chr5	99237222	99237422	+	981.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	15605.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.86658255526498	5.40394615347866	4.74864061857598	4.88160349971903	4.92631351971639	5.04268465397007	4.88126080236227	5.13534026012676	-0.0087792106516193	0.979535190549879	0.99269129061727
Merged-chr10-120363556-3	chr10	120363446	120363646	+	743.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010441, exon 5 of 5)	3' UTR (NM_010441, exon 5 of 5)	-25977.0	NR_040626	320626.0	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	3.38779293696055	3.37005642426888	3.38822217150739	3.78217331807432	3.59211138510562	3.31453605870265	3.43095847800511	3.26706688641941	-0.320916295220363	0.555626576658247	0.801591959543503
Merged-chr6-93127090-3	chr6	93126975	93127175	+	847.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	186493.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	3.71327870440402	3.28933941851134	3.75765396957991	3.84087598387516	3.21084152594706	3.34632225952069	3.01518698361406	3.02206729516193	-1.8952885524641	0.00166769558838582	0.0202879686012159
Merged-chr5-64795938-4	chr5	64795854	64796054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7569.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	7.80871956046896	8.11215014140499	7.98481336740451	8.06528836403864	7.82115566976461	8.14827620893642	7.89813080899951	7.83555985590352	-0.0955949031274244	0.580220260432276	0.815718435955212
Merged-chr3-16005617-3	chr3	16005520	16005720	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081687, intron 1 of 3)	Lx2|LINE|L1	712.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	3.34962460955977	3.4364678914861	3.7195971004157	3.34514999801645	3.3936379538397	3.33505872257412	3.39695812323944	3.80545914771024	0.101575857446821	0.847209544128374	0.9422142432572
Merged-chr18-36691585-4	chr18	36691502	36691702	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172831, intron 5 of 12)	intron (NM_172831, intron 5 of 12)	4323.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	5.15323983620641	5.11134767948776	5.05465759214455	5.18047389634143	5.18727389250264	5.08554455153877	4.99565735872876	5.35585863318117	0.0643331240123906	0.830345753062916	0.934980877782147
Merged-chr7-128208350-3	chr7	128208208	128208408	+	741.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1942.0	NM_009943	12862.0	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	2.97618664973368	2.93886856786084	3.21576439631645	2.64891568224958	3.13982603001315	3.21454053183632	3.14722554271741	3.21387996830642	0.94137523973582	0.120166021813091	0.383765666983124
Merged-chr12-85480801-4	chr12	85480684	85480884	+	820.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6894.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	4.29907430987547	4.57476317008036	4.07319976260699	3.6655730431887	4.2389743569886	4.09584792829342	3.65976896202782	4.45282592483124	-0.126292314487952	0.803760580092738	0.924336354580751
Merged-chr9-118908423-3	chr9	118908325	118908525	+	850.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18111.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	3.48453174681085	3.41467019022902	3.54186626616521	3.38844032255696	3.63420760936109	3.54099306458713	3.73078488918902	3.87940094995681	0.797465128990341	0.0952768812632992	0.3377851836151
Merged-chr12-35573998-4	chr12	35573910	35574110	+	953.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39021.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	5.48673249972808	4.89449262070835	5.88433486036289	6.09882313354093	5.08146423139731	4.9205491982409	4.61723250021193	4.86243605777137	-1.44224823063595	0.000200548067872054	0.00364991330172973
Merged-chr19-61059191-2	chr19	61059092	61059292	+	629.333374	f0_c57.idr|f1_c57bl6.idr	intron (NR_131953, intron 3 of 6)	RLTR12B|LTR|ERVK	81648.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	3.16280035370332	3.17228604721576	3.09695210626365	3.00974274966835	3.66709084082371	3.45925786031262	3.53592595977222	3.34233225452077	1.48287591433411	0.00463105717866248	0.0448725862945844
Merged-chr14-122649643-4	chr14	122649517	122649717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 8 of 24)	intron (NR_153443, intron 8 of 24)	115289.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	6.13297968891215	6.17531882301213	6.79367077851699	6.15051779566555	6.26556306355729	6.31113548955524	6.40108268083775	6.19158551078714	-0.0612691804126004	0.81074809472831	0.926854276252049
Merged-chr3-131869516-4	chr3	131869410	131869610	+	698.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-215782.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.79052438763619	3.65117698992989	3.89228879135323	3.88866554534397	3.88841099583368	3.79952049014563	3.82682319879252	4.11213564839556	0.280116132547531	0.52952450236647	0.785687996204931
Merged-chr10-13513514-4	chr10	13513419	13513619	+	954.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025799, intron 6 of 6)	intron (NM_025799, intron 6 of 6)	12491.0	NM_025799	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	4.83996288924899	4.97786721522386	4.87935027150069	5.31051482897071	5.48291348712977	5.12794292773697	5.301597185991	4.71590759021099	0.311860434194878	0.38289312864332	0.684806264846199
Merged-chr17-47610973-3	chr17	47610886	47611086	+	938.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020048)	promoter-TSS (NM_020048)	506.0	NM_016859	53414.0	Mm.472101	NM_016859	ENSMUSG00000023988	Bysl	Bys|Enp1	bystin-like	protein-coding	3.84548924308889	3.96685655799373	3.84605546248974	3.58946121904824	3.59640985716343	3.69188459817685	3.92302227071528	3.84376547276246	-0.128563872917838	0.784215068542317	0.915972189024067
Merged-chr15-78245657-5	chr15	78245520	78245720	+	830.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 1 of 9)	intron (NM_008677, intron 1 of 9)	809.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	2.73649353521608	2.5252726057794	2.61615354602436	2.22175219985238	2.46831226437232	2.72434388485562	2.47527122614928	2.48205133228111	0.0372562612717865	0.959357342295684	0.985513818852278
Merged-chr15-63888760-2	chr15	63888660	63888860	+	993.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_108053, intron 6 of 6)	intron (NR_108053, intron 6 of 6)	8053.0	NR_108053	665769.0	Mm.290602	NR_108053	ENSMUSG00000093867	Gsdmcl2	4921501E01Rik|4930453O09Rik|Gm7779	gasdermin C-like 2	pseudo	2.88787244384104	2.94490382552174	2.88824214169315	2.35041224751514	2.93612141305808	3.12272622526162	3.05286836249586	2.75369804584336	0.798006177398931	0.258149967199197	0.569968613835775
Merged-chr15-93310376-2	chr15	93310276	93310476	+	664.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_024189, intron 2 of 3)	MTC|LTR|ERVL-MaLR	26559.0	NR_028315	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	3.31892108672288	3.68884122166454	4.02675848025505	3.38121444638584	3.51324562501767	3.970157002068	4.1261957449793	3.69068985493193	0.630523301321557	0.241059570737212	0.551619163882296
Merged-chr2-91088033-4	chr2	91087933	91088133	+	789.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8645.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	3.670044485106	3.71978361692823	3.67054051761554	3.54919455714	3.69713619363031	3.99701286623103	3.90437680180536	3.87302188322485	0.653262530819387	0.148169075921736	0.42983887573497
Merged-chr10-58497997-4	chr10	58497924	58498124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162956)	promoter-TSS (NM_001162956)	87.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	7.42728011936058	7.81591497147039	8.2413653377357	7.4444773875682	7.32952181884241	7.67462807774007	7.47876471917636	7.63537980422616	-0.313851701699309	0.174646444888122	0.469069910997419
Merged-chr4-32249910-4	chr4	32249834	32250034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167501.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	6.07782286502103	6.10557033151949	6.49244924312774	6.5664860160706	6.22994638003403	6.16528983208938	6.58060621658801	6.4220838464891	0.0232812903291183	0.925974692866843	0.972725769113153
Merged-chr16-44773857-4	chr16	44773762	44773962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	8126.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	5.33402152629307	5.29677285078852	5.60628925594468	5.76175336378723	5.18290671205112	5.38411908652926	5.18231231524027	5.36112614496282	-0.452602858297688	0.129151849863653	0.399917323767561
Merged-chr14-32169063-3	chr14	32168963	32169163	+	925.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019744, intron 1 of 9)	intron (NM_019744, intron 1 of 9)	3274.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	3.32857934076423	3.1650562726575	3.32900341393819	3.72751775792464	3.40709259070138	3.31927639666866	3.47635170129514	3.14265098258154	-0.263866082098289	0.642309888953674	0.849120718759996
Merged-chr2-165874996-4	chr2	165874885	165875085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	3452.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	5.8413753058577	5.94039168180388	5.33026374162088	5.8292747440184	5.63879016029265	5.6913784460514	5.59685366264872	5.42230751212883	-0.286500877787762	0.306648590002325	0.619051127874117
Merged-chr17-35078046-4	chr17	35077931	35078131	+	951.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027366, intron 2 of 2)	intron (NM_027366, intron 2 of 2)	1089.0	NM_027366	70274.0	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	4.46403280329693	4.65019642310399	4.29122749203922	4.29888313254544	4.34540196999507	4.37119804173857	4.48371821317433	4.33417756377897	-0.10538502928315	0.780881564058076	0.914720297579717
Merged-chr12-3812813-4	chr12	3812714	3812914	+	942.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	5654.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	4.50348772304955	4.39599907148895	4.95377818576552	5.06980735952971	4.26889678698496	4.68146450999066	4.83175429089231	4.85211485486192	-0.214316380714241	0.596877909275944	0.824985875654518
Merged-chr4-136028274-3	chr4	136028078	136028278	+	868.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6529.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	3.30256878227997	3.02982987164414	3.24844958918692	3.02477594599194	3.25170242407294	3.0431949080853	3.23571395084101	3.30114885759438	0.25360935444409	0.648547154954601	0.85228081276334
Merged-chr5-66015728-4	chr5	66015642	66015842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001127382)	TTS (NM_001127382)	-11457.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	6.84768629612711	7.11358440282155	6.82111372019284	6.8091998735701	6.88353979523817	7.25941809719245	6.80044371092312	6.53735693438318	-0.0122079321971713	0.957282512557182	0.984815156534365
Merged-chr7-67962043-4	chr7	67961969	67962169	+	949.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 1 of 20)	intron (NM_010513, intron 1 of 20)	9812.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	5.21153873812304	5.10381400996016	4.79378603829265	5.4606773517414	5.0809700970376	5.05018948812597	5.12618302723908	4.74887865839176	-0.325750047646028	0.337207372188356	0.647016127715841
Merged-chr14-54771183-4	chr14	54771066	54771266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	10720.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	4.97959450532814	4.94055901362053	4.2233941940758	4.91046759844121	5.37315632114587	5.72308009224181	5.32678162179891	5.0473324535701	1.09370173815646	0.003287296369646	0.0342787090968404
Merged-chr14-33171952-3	chr14	33171821	33172021	+	662.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 1 of 58)	intron (NM_001146022, intron 1 of 58)	13145.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	3.53989627688008	3.48402185074352	3.06959630649366	3.15061609297338	3.43351161897279	3.43987481994605	3.3698769584015	3.38124548789035	0.306407197665729	0.570601154983683	0.810173737020678
Merged-chr17-36024297-3	chr17	36024219	36024419	+	836.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015618, intron 1 of 1)	intron (NR_015618, intron 1 of 1)	-3759.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	3.28513558571808	3.30520729988257	3.1699593203817	3.18151346310512	3.42020335117558	3.28046819505695	3.2171058018105	2.97366262938191	0.020183899226372	0.971080405681201	0.989599155239055
Merged-chr8-53496408-4	chr8	53496296	53496496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15306.0	NM_001205054	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	6.59783218970269	6.44017930152693	6.64485926730372	7.01526762090698	6.13227713761101	6.4196060055023	6.62577272397914	6.54671208597659	-0.393604916528832	0.110085170104824	0.366464892100425
Merged-chr4-41311326-4	chr4	41311223	41311423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026893, intron 2 of 8)	intron (NM_026893, intron 2 of 8)	3578.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	6.87568311265514	6.73788672470136	6.79672091479277	6.87272139341218	6.76937388762901	6.60874022969128	6.24201332970597	6.80560652321921	-0.275090594737778	0.209966297610432	0.514484230514723
Merged-chr4-63817749-4	chr4	63817659	63817859	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	43525.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	5.24694221323571	4.795994389856	5.05502497865682	5.40246481880772	5.20309085508079	4.92423101838497	4.88501789694213	5.6258193060231	0.0770134850199704	0.829182084676263	0.934397133080848
Merged-chr6-83616669-4	chr6	83616579	83616779	+	921.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	39437.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	5.02930655115446	4.68288948158807	4.5974192721099	4.76013708731607	5.00517285303806	4.68646367217868	4.80911218385752	4.67752063353485	0.0771110120889884	0.823431155535117	0.932313798231142
Merged-chr2-90744598-3	chr2	90744544	90744744	+	848.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018828)	promoter-TSS (NM_018828)	-726.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	2.71206884548668	2.62648371005885	2.71239131816027	2.39997769917586	2.73052644058757	2.82105767099869	2.76664628303593	3.05675364516952	1.16889318684005	0.0755255501696117	0.296826963476495
Merged-chr15-97182752-4	chr15	97182674	97182874	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15530.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	5.366013702298	5.43378835120909	5.22023324300264	5.43127797207328	5.39538853458038	4.87210883576231	5.02998524355634	4.94010310041955	-0.508465840447314	0.108470555749958	0.363483160530424
Merged-chr12-36317242-2	chr12	36317172	36317372	+	804.5	f0_balb.idr|f1_balb.idr	exon (NM_025312, exon 2 of 2)	exon (NM_025312, exon 2 of 2)	3103.0	NM_025312	66042.0	Mm.43375	NM_025312	ENSMUSG00000036169	Sostdc1	0610006G05Rik|Sostl|USAG-1|Wise|ectodin	sclerostin domain containing 1	protein-coding	3.68760770651701	3.50114410439888	3.41860237562447	3.91122990573329	3.4861032620423	3.40504591268358	3.57273453392785	3.53139060888086	-0.512405397413166	0.318565802749331	0.630414216554351
Merged-chr5-34518109-4	chr5	34518007	34518207	+	921.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4128.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	4.69566306136982	5.07901175576805	4.73530065684803	4.32279128327701	5.26222568066552	4.46690725124806	4.82176945856046	4.5252627254545	0.190321869184658	0.646961099641008	0.851532833657192
Merged-chr3-22076723-4	chr3	22076615	22076815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030732)	promoter-TSS (NM_030732)	63.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	7.05497941506025	6.67696523803783	6.88289250025791	7.19135797288729	7.50004101883845	7.27038320627604	7.5571020154008	7.42515781793397	0.63350744097144	0.00197868676423978	0.0232142649071738
Merged-chr19-46531837-1	chr19	46531737	46531937	+	557.0	f0_balb.idr	intron (NM_019718, intron 5 of 5)	intron (NM_019718, intron 5 of 5)	30189.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	3.06843535145209	3.1258160021473	3.12207814680988	3.05027095736604	2.47002600777333	2.7255656900294	2.61287851728364	2.82949115044802	-2.24778728005227	0.00189038920960327	0.0223737967326823
Merged-chr13-52239802-2	chr13	52239702	52239902	+	833.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	143061.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	3.29802549439062	2.80511738861533	2.88844258698531	2.94015932965122	2.84597468443893	3.19253974613957	3.00835437637777	3.29647047109601	0.405928855374072	0.510992399107599	0.775107681962276
Merged-chr2-148877595-4	chr2	148877478	148877678	+	889.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2066.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	3.85271711739825	3.76116558950559	4.38591229435042	4.52348867970311	3.96866071234431	3.85894357266462	3.89129148249121	4.00625247305345	-0.66492322488718	0.166904926817165	0.458391240726896
Merged-chr3-36613419-4	chr3	36613308	36613508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027810)	promoter-TSS (NM_027810)	-19.0	NM_027810	71492.0	Mm.286187	NM_027810	ENSMUSG00000037325	Bbs7	8430406N16Rik	Bardet-Biedl syndrome 7 (human)	protein-coding	7.8952488464938	7.90593439272355	7.86054509547261	8.08925418177807	7.60878023653822	7.60623072739274	7.96040322315162	7.40233505492904	-0.373061801075627	0.0464422727903543	0.221399406265128
Merged-chr8-88242076-3	chr8	88242003	88242203	+	800.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164499, intron 2 of 11)	intron (NM_001164499, intron 2 of 11)	-30300.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	2.85510595000863	3.0116714707188	3.24183146394249	2.38779123453576	3.36202030453158	3.24072317635048	3.2820696233174	3.34706905290588	1.53323487197726	0.0361142689278378	0.188888055552544
Merged-chr13-19828272-4	chr13	19828163	19828363	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4006.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	4.95873280949113	4.86695505120738	4.92203867848153	4.48738617080396	5.51335011255284	5.36907027859804	5.28603176526448	5.3639663060814	1.13297259361949	0.000332337120158478	0.00551923095561369
Merged-chr13-111788411-4	chr13	111788374	111788574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	20519.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	5.29035989463748	5.17827256015378	5.75779380392692	5.32829513585931	5.08480280175408	5.01203039966313	5.29408561737782	4.90983306685112	-0.584308187358154	0.0671844791431966	0.276519257599953
Merged-chr1-9893318-4	chr1	9893218	9893418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133220, intron 17 of 17)	intron (NM_133220, intron 17 of 17)	-15320.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	7.61920620766962	7.78567191188944	7.81145631308956	8.16474265624231	7.38773440791386	7.44312735403932	7.36854950200191	7.36915089259676	-0.63542473628872	0.000898074556159435	0.0123668115366362
Merged-chr11-114987513-1	chr11	114987413	114987613	+	706.75	f0_c57.idr	exon (NM_145437, exon 2 of 4)	exon (NM_145437, exon 2 of 4)	2373.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	3.55395012757103	3.5969332631854	3.90071531464997	3.23322299780975	3.94714107514534	3.8631846119482	4.30810913787738	4.52786547126053	1.71132599981121	0.000642194815283125	0.00942101911727896
Merged-chr5-72184146-4	chr5	72184045	72184245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15956.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	6.95216868852692	7.03734074857977	6.46495018947958	6.81148305874704	7.05985050085977	7.09120169170825	6.97963951658755	6.65017664816112	0.171783397489383	0.441541521319818	0.728526235547338
Merged-chr16-81454710-4	chr16	81454613	81454813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113208, intron 5 of 17)	intron (NM_001113208, intron 5 of 17)	254016.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	6.7630041971164	6.53816822611504	6.43668958298823	7.10788485112828	6.72596024143464	6.83598975610044	7.08910931101349	6.82944961078854	0.165152078526953	0.491647538611478	0.763149427573849
Merged-chr13-23531045-4	chr13	23530932	23531132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153173)	promoter-TSS (NM_153173)	-12.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	7.85267466824215	7.81893495636034	7.31635270647962	7.16410168684748	7.70601629978499	7.9575016307358	7.63974726747271	7.69656361189964	0.247588600890451	0.26139891051561	0.573293822445797
Merged-chr16-26035723-4	chr16	26035602	26035802	+	933.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173379, intron 1 of 14)	intron (NM_173379, intron 1 of 14)	70082.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	4.66872424319172	4.20425877353867	4.13737568786008	5.25357399418005	4.73465795679151	4.08986193011027	4.27334470161134	4.5525594768884	-0.48302594330201	0.325745032598435	0.637281303777148
Merged-chr4-53225768-2	chr4	53225668	53225868	+	838.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20428.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	2.90127110507186	2.85827108825826	2.90163013189824	2.85358273928462	2.70231924933552	3.00999070704703	2.8912472828051	2.95998208237973	0.0582144423490201	0.923324349893813	0.971648071395079
Merged-chr8-115423242-4	chr8	115423141	115423341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	283653.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	7.43325841945783	7.53572600212929	7.18335746747048	7.03507851082794	7.52267002240174	7.37224310527095	7.39768636945398	7.33082209675791	0.145876484438915	0.463228265986832	0.74463957416247
Merged-chr10-128298421-4	chr10	128298314	128298514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031252)	promoter-TSS (NM_031252)	-330.0	NM_031252	83430.0	Mm.125482	NM_031252	ENSMUSG00000025383	Il23a	IL-23|p19	interleukin 23, alpha subunit p19	protein-coding	7.57132814863488	7.47363382361934	7.46256844341775	7.37638451592559	7.58093596878517	7.67727945101533	7.46334611292359	7.65214767442396	0.170183856406517	0.320651885920257	0.632430335149585
Merged-chr19-45843610-4	chr19	45843525	45843725	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198296, intron 24 of 25)	intron (NM_198296, intron 24 of 25)	-27562.0	NM_145703	80906.0	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	5.93665171316549	5.51377472775066	5.50423490814804	5.95919104754894	5.61699355819946	5.56141763597908	5.35724145528002	5.63637369276482	-0.35132697610834	0.216790120437895	0.523507395258818
Merged-chr18-49982681-4	chr18	49982584	49982784	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	3257.0	NM_001177759	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	5.59977082029985	5.4197393713174	5.28671504624909	5.48454047892285	5.11407077538352	4.68081038607787	5.06965055565198	5.12501513344632	-0.806815346491271	0.00922864629019457	0.0745106413668057
Merged-chr8-54562346-4	chr8	54562246	54562446	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029569, intron 1 of 6)	intron (NM_029569, intron 1 of 6)	12015.0	NM_029569	76294.0	Mm.33171	NM_029569	ENSMUSG00000031519	Asb5	1110018D09Rik	ankyrin repeat and SOCs box-containing 5	protein-coding	4.46761137872662	4.61487295303712	4.55817300916976	5.26496483972368	4.30359967212119	4.50371052930678	5.03035184139073	4.96099185012166	-0.110925064955705	0.797778943901282	0.921862017583033
Merged-chr18-70478006-4	chr18	70477874	70478074	+	940.854126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289650, intron 5 of 8)	intron (NM_001289650, intron 5 of 8)	5308.0	NM_001289650	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	4.90170810557761	5.14171029355348	4.59797240733695	4.99433342669046	4.91378451123026	4.49441340893036	4.57718645625794	4.63726919740434	-0.520816102217026	0.149817821454934	0.43222611516459
Merged-chr15-75905647-4	chr15	75905560	75905760	+	955.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029663, intron 2 of 9)	intron (NM_029663, intron 2 of 9)	3684.0	NM_001285433	66656.0	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	4.3572313453367	4.45497818994077	4.61929787398466	4.36073083026913	4.68758114078201	4.48840862400374	4.87668505374523	4.95899226708769	0.697569720279395	0.0516335733149258	0.236197051091459
Merged-chr5-99582260-4	chr5	99582183	99582383	+	892.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	146777.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	4.6899831501345	4.34911766810382	4.38350345767209	4.80361178611399	4.09950053826998	4.21859204340543	4.48664463451339	4.24349928826802	-0.749516452608487	0.0615451052142059	0.262519236256882
Merged-chr12-35047968-4	chr12	35047838	35048038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	749.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	6.76440836344146	6.67342379573985	6.91462068212221	6.89554524113666	6.68680303114708	6.70625898085346	6.91721715420243	6.80322657803629	-0.058088929455937	0.772355346431368	0.910853621904009
Merged-chr10-80399693-4	chr10	80399590	80399790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306143)	promoter-TSS (NM_001306143)	-159.0	NM_001306143	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	9.48631911727383	9.69786904186704	9.57938846629463	9.44955354203919	9.59134248221444	9.50072402307857	9.59705579426702	9.48975314280869	-0.0109524053791417	0.936662067820095	0.977088684898533
Merged-chr12-69462136-4	chr12	69462047	69462247	+	942.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13403.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	4.54746005318873	4.20452642177172	4.58492849784029	4.4380778590057	3.97889830127309	4.47577880777311	4.45044456502938	4.10513427754556	-0.449303196405832	0.273500317369399	0.585133459876006
Merged-chr6-97408072-4	chr6	97407909	97408109	+	944.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	ORR1A4-int|LTR|ERVL-MaLR	51277.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.72523362927583	4.78089368571019	4.65227822541305	4.69930053107008	4.6638491916214	4.48368043774981	4.47038546943994	4.25260478820077	-0.504420706251841	0.163251274429629	0.452864977693073
Merged-chr13-48878760-4	chr13	48878631	48878831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033268)	TTS (NM_001033268)	-7846.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	8.237507581658	8.19765906882458	8.06959124045233	8.04581466347641	7.97302456750499	8.00507285063493	8.1540369904854	7.86083627406611	-0.173201430349627	0.28694652320552	0.598607969863316
Merged-chr2-83994119-4	chr2	83994022	83994222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52896.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	5.43821673901364	5.10884726341864	5.43916110343586	5.2749733652598	5.24285563668412	5.40847786445673	5.208265246887	5.32231200141216	-0.0379187021094582	0.895781859066815	0.960967629364294
Merged-chr8-117500384-3	chr8	117500264	117500464	+	844.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 1 of 32)	intron (NM_172285, intron 1 of 32)	2089.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	3.08162670693754	3.2794201184622	3.25911048114879	3.06440339679475	3.34318516994413	3.25363212133815	3.13266848273158	3.14212384682092	0.216977814444037	0.69217585079382	0.874789880500739
Merged-chr1-34860411-3	chr1	34860313	34860513	+	961.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357425, intron 2 of 8)	MLTR14|LTR|ERV1	10424.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	4.2368492306884	4.35204288997442	4.59024661498199	4.30670046558725	3.92294815634257	3.99829938504367	4.34622498915523	4.18892013684915	-0.63698345285565	0.123264165415032	0.389255547030903
Merged-chr8-34846214-4	chr8	34846129	34846329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 20 of 26)	intron (NM_175091, intron 20 of 26)	38619.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	6.83673698037702	6.96011619592417	6.83793511348271	7.36458555002488	7.38129628394974	7.11389527299193	7.25168215565542	7.35252407159574	0.331209751626205	0.125059872703738	0.392540313056373
Merged-chr8-67917257-3	chr8	67917145	67917345	+	702.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177698, intron 3 of 14)	intron (NM_177698, intron 3 of 14)	-6299.0	NM_030263	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	3.72824782340562	3.44800234471015	3.41050282452514	3.69418390701729	3.47884056118209	3.58400786409267	3.45648616125499	3.62917492285522	-0.156461175300403	0.752365759653596	0.902425600431109
Merged-chr13-29431099-3	chr13	29431014	29431214	+	860.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131896, intron 13 of 16)	intron (NR_131896, intron 13 of 16)	414859.0	NR_045075	77920.0	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	3.79857097610648	4.01700976695727	3.94723743297935	4.15780382532125	3.98899809601439	3.55532416763423	3.73121274869887	3.74363773007835	-0.629069765618636	0.181926457936977	0.478594942140521
Merged-chr12-99964561-4	chr12	99964469	99964669	+	978.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146037)	promoter-TSS (NM_146037)	70.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	5.53048060004573	5.27321960353597	5.70091547890242	5.47443661423914	5.24671927706688	5.04891483125041	5.39603974269865	5.44730657045494	-0.363169689050283	0.216085364912167	0.522486426388804
Merged-chr15-66815589-1	chr15	66815489	66815689	+	541.0	f0_balb.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	16240.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	2.69469111134174	2.54615994209065	2.63497524472601	2.56339084315877	2.49055700300477	2.6766568448279	2.56321222738512	2.28404552275079	-0.528921823233196	0.455102941245756	0.738746012503745
Merged-chr8-39620493-4	chr8	39620446	39620646	+	967.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 4 of 9)	RMER6A|LTR|ERVK	22132.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	4.81082461246523	5.52395260284689	4.9309819138911	4.68977354087278	5.14620170591219	5.625230484028	5.29476501227697	4.88912169811813	0.436829431589887	0.242587996687637	0.553328559130594
Merged-chr9-50452188-3	chr9	50452089	50452289	+	874.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42336.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	3.71204459176568	4.08105168088403	4.02264059949247	3.68632184085887	3.56601093121118	3.89131596043465	3.9583410904463	4.34213785246038	0.227685995391619	0.642022009565963	0.848956596238007
Merged-chr3-86987079-3	chr3	86986960	86987160	+	792.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007640, exon 2 of 7)	exon (NM_007640, exon 2 of 7)	474.0	NR_038188	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	2.83537336587285	2.78577813099088	2.89242039150675	2.86821523580909	2.62573175474286	2.60956679984764	2.57313345024468	2.64769965498114	-1.18303985714097	0.0734677640493928	0.29196264737426
Merged-chr2-145746823-3	chr2	145746737	145746937	+	759.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	-39279.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	3.64965659646493	4.18939149254463	4.15927439810905	4.17955435190968	3.0843845820954	3.37674748245359	3.57838325654525	3.64812073942751	-2.04056589585127	0.000306900013152212	0.00516915192526296
Merged-chr1-155912094-1	chr1	155911994	155912194	+	794.0	f0_balb.idr	intron (NM_001039184, intron 17 of 37)	intron (NM_001039184, intron 17 of 37)	61161.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	3.03809134196202	3.1092757427233	3.19908388945881	3.50354289805295	2.53801561667321	2.58622311913964	2.63588790949838	2.64148850899182	-3.73702545438286	2.83583198589041e-05	0.000691746692678867
Merged-chr5-92278165-4	chr5	92277996	92278196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163687)	promoter-TSS (NM_001163687)	85.0	NM_001163687	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	6.92267665333201	7.01974727742746	7.49173153145154	7.07915353468958	6.58584216375647	6.386152302696	6.56369112741679	7.23989127569353	-0.567873108198549	0.0284934026986109	0.161952560144089
Merged-chr1-87634738-2	chr1	87634638	87634838	+	922.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	14426.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	3.51735110148224	3.59714550856371	3.63369513815213	3.6769093642657	3.66369331382909	3.57193381621242	4.11215677227088	3.88254126446802	0.627013910328213	0.191606059938028	0.490975870844874
Merged-chr3-103859093-4	chr3	103858964	103859164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104070)	promoter-TSS (NR_104070)	-731.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	5.32427138392104	5.45111386773463	5.38573524932062	5.42725214569721	5.56268660930616	5.7498662246613	5.02576308930203	5.54784203953581	0.169991702304638	0.567773974329304	0.808331754798167
Merged-chr11-102556309-4	chr11	102556175	102556375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159492)	promoter-TSS (NM_001159492)	-117.0	NM_001159492	237943.0	Mm.260282	NM_001159492	ENSMUSG00000034621	Gpatch8	5430405G24Rik|AU018890|Fbm1|Gpatc8|mKIAA0553	G patch domain containing 8	protein-coding	6.71782563215365	7.19087922163274	6.46011142780214	6.41637252885178	6.73142807438703	6.75689601498116	6.6552845238062	6.60750018798554	-0.0587313979386698	0.813357152923232	0.927857767644014
Merged-chr1-133136080-3	chr1	133135979	133136179	+	901.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133819, intron 1 of 1)	MIR|SINE|MIR	4913.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	4.25436832324739	3.58600449605145	3.92477548744022	4.04341408140389	4.05679120810312	3.3793251468502	3.59159734284599	3.82432895526229	-0.643450128597475	0.229789012260672	0.538856256177995
Merged-chr3-116642121-4	chr3	116641992	116642192	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008246, intron 5 of 11)	intron (NM_008246, intron 5 of 11)	20585.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	5.28254671903362	4.95597019050239	5.25402986351716	5.59762096895958	4.85148584727234	4.79563170402231	5.16736733881368	5.33657231287183	-0.474683597978364	0.165974198745341	0.456928587863273
Merged-chr6-83640805-3	chr6	83640700	83640900	+	910.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	15316.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	3.65905682114895	3.85888871767955	4.02137160105262	4.33984423000612	3.92091448598725	3.83627914414806	3.81180759904908	3.8249649812521	-0.449341241429285	0.34563723837262	0.653988358142424
Merged-chr19-17333980-4	chr19	17333870	17334070	+	938.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	5535.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	4.62915072841278	4.51101590913293	4.62987821363253	4.97330028517803	5.2264449140977	5.13965006866269	4.87699553633195	4.74984808620651	0.601577289316195	0.0944256495431782	0.336173826280892
Merged-chr17-5422068-3	chr17	5422001	5422201	+	589.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027457, intron 3 of 3)	intron (NM_027457, intron 3 of 3)	-3334.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	2.94159630478323	3.05713433526417	2.87545413935911	2.7876592753	2.97886744264899	3.05159969167494	3.31582068435424	3.12164068051892	0.863990710959544	0.138812282943178	0.414381792154761
Merged-chr18-82862343-4	chr18	82862252	82862452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	6455.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	6.08987498894112	6.0839075650356	6.04852072206266	6.04530860592584	6.39236035555731	6.18076882353228	6.23385226211695	5.93157649263921	0.215062022237136	0.362490625821884	0.66767488207285
Merged-chr15-27665802-4	chr15	27665702	27665902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	15740.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	7.07952347534178	7.41835100553712	7.1618952435352	6.92167042952679	7.25515696362816	7.17092270519042	6.98415756505243	6.868967413851	-0.0935963773718402	0.659202246549328	0.858145103575869
Merged-chr6-136803927-2	chr6	136803819	136804019	+	1000.0	f0_c57.idr|f1_balb.idr	TTS (NM_175652)	TTS (NM_175652)	512.0	NM_175652	320332.0	Mm.246720	NM_175652	ENSMUSG00000096010	Hist4h4	B130044J01Rik	histone cluster 4, H4	protein-coding	6.41623066681099	6.61948211649466	6.34427050389766	6.52284297900471	6.48895676292751	6.61114531130508	6.41941705735357	6.62453625288357	0.0721157285082863	0.7342596359541	0.894944547467883
Merged-chr1-106796263-2	chr1	106796163	106796363	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009190, intron 1 of 10)	CpG	462.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	5.3562231149238	5.36424668184392	5.41617439744805	5.4374957957633	5.36911990354016	5.33950672551026	5.47224063528425	5.74014499396927	0.156194150223265	0.576460496184393	0.8135268515997
Merged-chr19-10456923-3	chr19	10456850	10457050	+	924.5277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001111140, exon 1 of 1)	exon (NM_001111140, exon 1 of 1)	497.0	NM_001111140	278795.0	Mm.490638	NM_001111140	ENSMUSG00000090291	Lrrc10b	Gm705|SerdinR	leucine rich repeat containing 10B	protein-coding	3.04381946549635	3.0941137874064	3.16046272191649	3.26561801435302	2.83586379839698	2.95443479152788	2.90763322392574	3.2650285390621	-0.624617537003422	0.299202028028686	0.611487916419371
Merged-chr1-155122063-2	chr1	155121963	155122163	+	979.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22427.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	3.71653597335356	4.17563603816214	3.36072058111743	3.15755728413691	3.93913473611132	3.72856293328447	3.53703545272384	3.76588315881752	0.251406774218307	0.661911878418378	0.859638834344915
Merged-chr15-58266620-4	chr15	58266499	58266699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51707.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	7.52870912250378	7.14214725191275	7.41147326628169	7.48383205340982	7.21766304680296	7.03341603730025	7.42146416537661	7.16455050312731	-0.246627456617707	0.206622272286506	0.510630050659024
Merged-chr11-59848219-4	chr11	59848111	59848311	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134029, exon 1 of 5)	exon (NM_134029, exon 1 of 5)	138.0	NM_134029	103850.0	Mm.41761	NM_134029	ENSMUSG00000032615	Nt5m	2010013E09Rik|AI846937|dNT-2	5',3'-nucleotidase, mitochondrial	protein-coding	5.03783963201442	5.03247722142007	5.07116342750941	5.23684535263737	4.64817278945317	4.96112372251433	4.72213054151853	5.09930637978539	-0.487211744766818	0.138322172144029	0.413742830038649
Merged-chr9-61029423-4	chr9	61029317	61029517	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12348.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	5.02780515546025	5.6841009963541	5.60985075709992	5.43387436368784	5.67305388296549	5.70491152628042	6.10111733732676	5.28262033030148	0.437805998695808	0.170633902469954	0.463860583895888
Merged-chr10-126869819-4	chr10	126869729	126869929	+	799.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026858, intron 5 of 5)	intron (NM_026858, intron 5 of 5)	31542.0	NM_026858	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	3.85129286270345	3.99737815863704	3.79835176995925	4.12893586699426	4.14504701257978	4.12237508964199	3.78362902196922	3.74064899688095	0.0119836156433622	0.979042177638843	0.99259163825749
Merged-chr3-84748329-3	chr3	84748229	84748429	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67248.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	4.73140548124736	4.68133802205622	4.89200277299751	5.47443691994281	3.47431495125564	3.68660552456652	4.01058954329594	3.70454029421618	-3.46646500075862	7.06603776003003e-11	5.53913548151076e-09
Merged-chr3-104460328-3	chr3	104460227	104460427	+	969.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025067, intron 17 of 17)	B4A|SINE|B4	51591.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	4.68023851703842	4.32238606272109	5.20365459521032	5.46403016495689	3.94479554145656	4.25211285623859	4.40948724625195	4.28117725946038	-1.72079531753892	0.000153208477081058	0.00290032611440229
Merged-chr1-166001732-7	chr1	166001515	166001715	+	931.161926	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198932, intron 1 of 15)	CpG	1019.0	NM_011137	18986.0	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	4.42210980015904	4.41331439394465	4.46402364805266	4.22385140887512	4.6685054926228	4.21575270869913	4.3605796711054	4.46115384480345	0.178201857716362	0.642769991810905	0.84935096784468
Merged-chr5-146808727-5	chr5	146808495	146808695	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13639.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	4.06361899802728	3.89958293969408	4.62963255161185	4.45982841086214	3.67866489718169	3.80210092368122	3.8432137283739	3.96310120768859	-1.29344459161775	0.00611824373083095	0.0550487258901297
Merged-chr6-5167512-4	chr6	5167387	5167587	+	995.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011134)	TTS (NM_011134)	26459.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	5.14340315108298	4.93776491030914	4.87396335885092	5.02512318005823	5.20755365555443	4.93273461145719	4.8131691092842	5.04610316257289	0.0365943404363247	0.908818953901287	0.966100563913989
Merged-chr3-95893352-3	chr3	95893240	95893440	+	825.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146134)	promoter-TSS (NM_146134)	-581.0	NM_146104	226548.0	Mm.306954	NM_146104	ENSMUSG00000015750	Aph1a	6530402N02Rik|APH-1a	aph1 homolog A, gamma secretase subunit	protein-coding	3.3942153362736	3.37574214055287	3.33509580030984	3.32049735304017	3.49691177250742	3.62250526005888	3.32322663820845	3.74614068344674	0.673199427416719	0.180424359791729	0.476810926918225
Merged-chr2-39226397-4	chr2	39226299	39226499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024209)	promoter-TSS (NM_024209)	-50.0	NM_024209	67857.0	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik|Pp6C	protein phosphatase 6, catalytic subunit	protein-coding	7.7518323241852	8.17828667100578	7.90304702511546	8.14785910109527	8.09015376901992	8.1943187563181	8.37516881934908	8.14018172227143	0.23990635442176	0.178379580119358	0.474235309662659
Merged-chr10-91702007-4	chr10	91701904	91702104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186825.0	NR_152729	102633867.0	Mm.351514	NR_152729	ENSMUSG00000111657	Gm31592	-	predicted gene, 31592	ncRNA	5.68949912553863	5.49223761381527	5.86086139843492	6.784689910552	5.38111702072428	5.44602426035522	5.73672608044707	5.66015542242232	-0.843252999462628	0.020042941701707	0.128220755913671
Merged-chr5-38580937-3	chr5	38580796	38580996	+	784.833313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19301.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	3.34412433375691	3.90497514708884	3.7278071299144	3.56809966847393	3.31361723601309	3.45868161507952	3.56277410510814	3.52087321243516	-0.61842812938516	0.233500608544777	0.543166110513699
Merged-chr5-81020052-7	chr5	81019982	81020182	+	931.371399	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347367)	promoter-TSS (NM_001347367)	-489.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	4.55110703967213	4.20826145519513	4.11150283232576	4.13767216722398	4.33993117938764	4.33988820027788	4.63606233499759	4.51107476141608	0.487129434804947	0.212686757129551	0.517670706102327
Merged-chr8-108615983-4	chr8	108615872	108616072	+	913.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-31295.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	4.90988356636556	4.58956236340901	4.94608099086556	5.15605436251642	4.64663420875454	4.67392402240076	5.30619894361482	5.1946215591312	0.116862476386075	0.754865695583586	0.903502242272986
Merged-chr11-79622859-3	chr11	79622737	79622937	+	905.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	intron (NM_175543, intron 3 of 14)	326.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	4.17684174806531	3.92265414248003	3.88306804538253	3.86275336560151	4.09367864922055	4.3473256268048	4.11452333037011	4.21791440819399	0.613661561031067	0.13766829979733	0.412732369272771
Merged-chr10-4339022-3	chr10	4338927	4339127	+	621.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031185, intron 2 of 3)	intron (NM_031185, intron 2 of 3)	48448.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	3.3504322430175	3.21077683186305	3.02605375840099	3.28199899627161	2.64290259256293	2.86073106631279	3.07457147116023	2.89544235645196	-1.56070254137387	0.0161533970232112	0.110396797572266
Merged-chr2-144594050-4	chr2	144593981	144594181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033297)	promoter-TSS (NM_001033297)	16.0	NM_001033297	228715.0	Mm.27391	NM_001033297	ENSMUSG00000074754	Smim26	Gm561	small integral membrane protein 26	protein-coding	6.85341955799415	6.41554639953337	6.58348894028528	6.8195789870174	6.52450486606825	6.30765551925372	6.62676034408229	6.68557633758923	-0.203363545607997	0.36677541264015	0.671175337334839
Merged-chr16-24637980-4	chr16	24637866	24638066	+	895.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-83889.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	4.3393852730817	4.41727936666575	4.02008831293329	4.05246759608591	4.50052855706807	4.14256886021158	4.23752354025304	3.91158522016895	0.0351405544136625	0.935465351174155	0.976584556499152
Merged-chr15-8705104-4	chr15	8705000	8705200	+	969.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 2 of 9)	intron (NM_148938, intron 2 of 9)	5707.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	4.72161157775385	4.83153465756016	4.46224413251664	4.42002424143915	4.97918130295928	5.0078275230311	5.06894089360869	4.79547661032777	0.740905806781037	0.0300555232728849	0.16744850430813
Merged-chr6-29529548-1	chr6	29529448	29529648	+	1000.0	f0_c57.idr	intron (NM_001252382, intron 1 of 8)	intron (NM_001252382, intron 1 of 8)	266.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	4.89481028594683	4.77386669644478	4.85947319001402	5.03270057724228	4.73888028364411	4.95841153360536	4.90705026610586	5.02725444129229	-0.000672769813838801	0.998351736980232	0.999264255793738
Merged-chr17-80445854-6	chr17	80445710	80445910	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009231, intron 6 of 21)	intron (NM_009231, intron 6 of 21)	34643.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	3.50824178867132	3.38862952329872	3.61916809319248	3.56690079535826	3.77867349593396	3.78892559921604	3.60465742386572	3.61713892430165	0.554975821925967	0.241996565201273	0.552602040162126
Merged-chr4-53353650-4	chr4	53353560	53353760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83428.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	8.68126923085523	8.59493439433393	8.8022162833322	8.8470273800342	8.61237036682859	8.51892140706467	8.48680802422355	8.57809237147669	-0.234091955482904	0.117189359117754	0.378682551510059
Merged-chr6-4749343-4	chr6	4749244	4749444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040611, intron 1 of 1)	intron (NM_001040611, intron 1 of 1)	2038.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	7.06804501736895	7.20870272043481	6.78558510140234	7.0079931612146	7.2041842146301	7.15868203139858	7.26411874039186	7.17971496245783	0.238602970602673	0.211354890682645	0.515972920864297
Merged-chr7-68282790-4	chr7	68282682	68282882	+	855.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013811, intron 1 of 8)	intron (NM_001013811, intron 1 of 8)	-6188.0	NR_040340	100504026.0	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	-	predicted gene 16157	ncRNA	4.38085662359169	4.4889156300223	4.54943804984166	4.95437348709854	4.29231567792096	4.26240724373865	4.67501678386349	4.23704810275023	-0.574575388260083	0.156771528799712	0.442893690014765
Merged-chr17-48234708-4	chr17	48234574	48234774	+	995.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347399, intron 1 of 2)	intron (NM_001347399, intron 1 of 2)	1935.0	NM_021406	58217.0	Mm.248352	NM_021406	ENSMUSG00000042265	Trem1	-	triggering receptor expressed on myeloid cells 1	protein-coding	6.14624759276106	6.15785226249535	6.53792676778609	5.95444188701905	5.68001346984555	5.78650789154236	5.97492085070231	5.41464578629568	-0.759883505534915	0.0062212541045906	0.0557430319625698
Merged-chr10-78143994-3	chr10	78143886	78144086	+	784.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25782.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	3.56853204902519	3.81552768794038	3.62831217232885	3.54769396822878	3.91496623828309	3.96362173711512	3.67066166336537	4.14423175922071	0.855748111955392	0.063296004219404	0.267015129753628
Merged-chr6-72038913-5	chr6	72038800	72039000	+	801.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046180, intron 1 of 2)	RLTR13C2|LTR|ERVK	3628.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	3.56516975754407	3.27661436380555	3.47319590702839	2.47649657175342	2.97570599387608	3.06364443935477	2.86695807994904	3.26315669481894	-0.834447576072545	0.255041971450225	0.566584211464242
Merged-chr19-34520851-4	chr19	34520776	34520976	+	808.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	6598.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	3.0239102584393	3.54808996196347	3.54650415103954	3.15682135546547	3.73892626090425	3.66486477251673	3.58431498511953	3.78957354173643	1.19470591696612	0.0257876277545067	0.151634659722266
Merged-chr10-10468876-4	chr10	10468771	10468971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	3443.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	5.92340853972115	5.73215012019284	5.82422925253239	6.15807751876173	6.60281289688767	6.34118570418483	6.55121474150623	6.16090001040119	0.75282644246891	0.00292580494695136	0.0313470853036408
Merged-chr4-43478353-4	chr4	43478245	43478445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5364.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	6.22098132600099	6.33062489761823	5.76704575212933	6.21249718188312	6.73897099210533	6.2953744301609	6.74761971814268	6.7112281394421	0.71482923631956	0.00337644177818556	0.0350286764800277
Merged-chr3-145950192-1	chr3	145950092	145950292	+	550.0	f0_balb.idr	Intergenic	Intergenic	12178.0	NR_151446	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	3.00826780547172	3.14945313853969	3.28216813788554	3.14843264707739	2.80236282464512	2.76703053251529	2.99797393059604	3.00714541569925	-1.10695493072165	0.0709249756248149	0.285611813631427
Merged-chr8-119841199-3	chr8	119841136	119841336	+	944.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028071)	promoter-TSS (NM_028071)	-657.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	4.152405142406	4.01627108009685	4.01977082741712	4.02181969229643	3.85693841627343	3.93770020050788	3.68946233808309	4.10759928304092	-0.404287254097991	0.352301103031682	0.659472457927471
Merged-chr10-62491623-4	chr10	62491532	62491732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4827.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	5.82502555506075	6.37999943158519	5.63676242488124	5.66241167096529	6.2288665080105	5.90026221297106	6.28710589046146	6.33195261870751	0.450917837570957	0.112897176393223	0.371420623567672
Merged-chr12-85374284-4	chr12	85374181	85374381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 1 of 4)	CpG	436.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	7.55308101943766	7.78989965118925	7.39979191517283	7.50487314693565	7.39205464605116	7.77634260846576	7.96838149564689	7.71085083908406	0.200417967541168	0.315317367794444	0.627105605858262
Merged-chr3-95609413-4	chr3	95609255	95609455	+	947.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146133, intron 3 of 4)	intron (NM_146133, intron 3 of 4)	-15625.0	NM_019561	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	3.94009971199927	3.7406843718477	4.02666721352134	3.85523277517228	3.71736872505027	3.63349830586721	3.56708294087359	3.8451886829717	-0.582899660314196	0.207846153292998	0.511983712113867
Merged-chr6-136809880-4	chr6	136809768	136809968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177688, exon 1 of 1)	3' UTR (NM_177688, exon 1 of 1)	1620.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	5.10556238452259	5.60934348999173	5.34399923293091	5.27756537898591	5.8069268104629	5.74387602885926	5.46272208364881	5.45853998210853	0.496641550867394	0.0871988856795105	0.322076149851169
Merged-chr10-34418589-4	chr10	34418509	34418709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347463)	promoter-TSS (NM_001347463)	-58.0	NM_001347463	319638.0	Mm.73467	NM_176968	ENSMUSG00000039480	Nt5dc1	6030401B09Rik|AW987726|Nt5c2l1	5'-nucleotidase domain containing 1	protein-coding	8.22776025648636	8.03026623022369	8.11220866237279	8.33988127519464	8.41452774018795	8.19614326856677	8.34444974793983	8.38843135206877	0.193843786595659	0.232223118743559	0.541841256442921
Merged-chr5-125147457-4	chr5	125147393	125147593	+	936.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 1 of 46)	intron (NM_011424, intron 1 of 46)	31721.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	3.86701581025074	4.56679038460884	3.96986265137879	3.785078463418	4.22508876867284	3.75571158555242	3.85180985460659	3.75463553548269	-0.439048921070479	0.384475336255647	0.686016676237897
Merged-chr8-46672925-4	chr8	46672809	46673009	+	971.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55618.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	4.8854515898022	4.6693971581848	4.8148036045613	4.77519422700061	5.02220833317684	4.51364195646402	4.96197480078431	4.88297746136687	0.172434638305136	0.611650432307026	0.832433898415756
Merged-chr6-125164810-4	chr6	125164709	125164909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289726, intron 2 of 6)	CpG	964.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	6.46173228919214	6.76317240651806	6.48023108921606	6.57613003408903	6.86512283644395	6.58631570217793	6.4298648811057	6.55892709989005	0.0744897725340307	0.736667641796243	0.896043754662457
Merged-chr3-129901425-4	chr3	129901306	129901506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009811)	promoter-TSS (NM_009811)	-9.0	NM_009811	12368.0	Mm.281379	NM_009811	ENSMUSG00000027997	Casp6	CASP-6|Mch2	caspase 6	protein-coding	7.27904046882397	6.97347399054169	7.03242305254096	7.60444365955687	7.40602510489868	7.14377023718183	7.73230021840945	7.54393143020285	0.286788702809828	0.212214476774479	0.517089355139349
Merged-chr12-99097083-2	chr12	99096983	99097183	+	691.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65725.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	3.12827318826965	2.73329106294627	2.93965995925535	3.08796816994486	3.19355129083396	3.24026544638641	3.11688032738886	3.34209210214777	0.932790357017622	0.115176927500001	0.375505100872834
Merged-chr14-26533998-9	chr14	26533826	26534026	+	928.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347494, exon 1 of 20)	5' UTR (NM_001347494, exon 1 of 20)	698.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	4.38059273374867	4.00371338479515	3.92511825509379	4.07525960695624	4.15367864868716	4.10206121602842	4.10954023724455	4.37841271104247	0.22000737100449	0.59624530499419	0.824576824188958
Merged-chr11-12050687-3	chr11	12050567	12050767	+	960.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13247.0	NM_010345	14783.0	Mm.273117	NM_010345	ENSMUSG00000020176	Grb10	5730571D09Rik|AI325020|Meg1|mKIAA0207	growth factor receptor bound protein 10	protein-coding	4.15440143135731	3.8166086251537	3.96767505759873	4.37397329085826	3.86992617520473	3.92741081959031	4.17876689096947	4.06233798940556	-0.261474477727506	0.560583185444502	0.804563871297431
Merged-chr3-115644090-4	chr3	115643974	115644174	+	864.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70981.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	3.86087152094899	4.31290846012682	4.20894497089675	4.29677395706152	3.97300809917344	3.9829126126147	4.0539763663246	4.33031460103809	-0.258214516706016	0.547258645791074	0.796773729062879
Merged-chr17-33678975-3	chr17	33678878	33679078	+	741.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109913, intron 1 of 16)	intron (NM_001109913, intron 1 of 16)	6480.0	NM_001109913	76936.0	Mm.311439	NM_029804	ENSMUSG00000059208	Hnrnpm	2610023M21Rik|AA409009|Hnrpm|mKIAA4193	heterogeneous nuclear ribonucleoprotein M	protein-coding	4.04179169524841	4.07816346900816	3.53722330174387	3.80415908804082	3.99884209864926	3.71207532150933	3.7480984935077	3.59513505804457	-0.293031478832425	0.549438136317243	0.798017111469724
Merged-chr2-35827035-4	chr2	35826946	35827146	+	898.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029774, intron 6 of 9)	intron (NM_029774, intron 6 of 9)	7856.0	NR_040618	77665.0	Mm.400558	NR_040618	ENSMUSG00000086449	9030204H09Rik	-	RIKEN cDNA 9030204H09 gene	ncRNA	4.72268545879835	4.40842713767912	4.76192521756898	5.07221135833881	5.13391897951088	4.7766685570513	4.66212915346408	4.75879079841745	0.155109260070617	0.680166428448608	0.86866966089289
Merged-chr5-23783146-3	chr5	23783023	23783223	+	770.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178403, intron 1 of 15)	intron (NM_178403, intron 1 of 15)	588.0	NM_001289780	78697.0	Mm.58660	NM_178403	ENSMUSG00000057541	Pus7	C330017I15Rik	pseudouridylate synthase 7	protein-coding	3.22175436009024	3.24352426838491	3.16570013790225	3.09015091805136	3.10633408023041	3.08750577919869	3.03480369810556	3.22043539897705	-0.249328100459482	0.652627153542531	0.854764223296605
Merged-chr4-3684794-2	chr4	3684623	3684823	+	986.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	B4A|SINE|B4	6602.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	2.41550909854147	2.56326177900577	2.18926146607587	2.14641360148639	2.54864881361551	2.58968649237248	2.53842864582234	2.60808613984134	1.33243863104957	0.0733968458424113	0.291760773041259
Merged-chr18-55409420-4	chr18	55409290	55409490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-416799.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	7.29395849051928	7.67578583764924	7.6375854118128	7.66419304954278	7.20382425539424	7.41705824753971	7.63288734901903	7.62401029995028	-0.141731528337637	0.472164868953135	0.750418059376037
Merged-chr2-29739624-4	chr2	29739518	29739718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039087, exon 26 of 26)	3' UTR (NM_001039087, exon 26 of 26)	-21910.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	6.25468476937974	6.68230267099332	6.27486371812363	6.55224868593416	6.12860506660039	6.08295903721306	6.08233712085859	6.37902467937662	-0.437389140961551	0.0658976281358118	0.273323537540741
Merged-chr15-83173054-1	chr15	83172954	83173154	+	974.0	f0_balb.idr	promoter-TSS (NM_029787)	promoter-TSS (NM_029787)	-846.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	3.92129109377972	3.85312599106058	4.01509219461084	3.89049256207639	3.9396952366398	3.77143237442936	3.75339349221147	4.05651842069126	-0.0799560797216517	0.855008765759635	0.945424485789793
Merged-chr4-16160625-3	chr4	16160523	16160723	+	710.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138102, intron 1 of 11)	intron (NR_138102, intron 1 of 11)	3020.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	3.93660818234323	3.72493077662774	3.41919315278835	2.82004136852929	4.05392583067648	4.36578623718325	3.96535764068387	3.88608953194195	1.49676141062703	0.0137017437735063	0.098497753542661
Merged-chr19-36918975-4	chr19	36918881	36919081	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028263, exon 2 of 2)	exon (NM_028263, exon 2 of 2)	618.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	5.14517382574606	5.23844386746932	5.2731187670774	5.4141140226253	5.16154495122566	5.10653417822843	5.33402542091305	5.38475309657835	-0.06390702009981	0.828166631379227	0.93406760770955
Merged-chr3-89847807-4	chr3	89847697	89847897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172530, intron 2 of 5)	MIR|SINE|MIR	16427.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	5.88127508597984	5.71725018665625	6.45679225582464	6.73682992971389	6.26145808269414	5.72410441241731	6.40767346356857	6.26386733013514	-0.132289163068217	0.680097914890829	0.868613329816696
Merged-chr11-58103502-2	chr11	58103400	58103600	+	813.833374	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356477)	promoter-TSS (NM_001356477)	-470.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	3.49920032426156	3.38415097502667	3.19307765811735	2.61135327527029	3.03985890704563	2.97969234270781	2.93009179493594	3.19126573083739	-0.690446349269864	0.307115243284302	0.619340215249893
Merged-chr15-9629888-4	chr15	9629799	9629999	+	975.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305042, intron 25 of 36)	intron (NM_001305042, intron 25 of 36)	-100023.0	NM_008372	16197.0	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	4.4376360119953	4.08374869269502	4.34792509561868	5.01806052837457	4.37307601700405	4.15988402171156	4.75745780980616	4.84256637043137	0.053959918955394	0.906805139767359	0.965425954552266
Merged-chr16-84735977-4	chr16	84735879	84736079	+	836.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017404)	promoter-TSS (NM_017404)	-677.0	NM_017404	27393.0	Mm.103655	NM_017404	ENSMUSG00000022889	Mrpl39	C21orf8|MRP-L5|ORF22|Rpml5	mitochondrial ribosomal protein L39	protein-coding	4.06261179166978	3.80986569640188	3.66387154544763	3.93846443030557	4.33186694241512	4.61187707599361	4.26903056634495	4.2442540642768	1.23721382141859	0.00352100435722718	0.0362379365446897
Merged-chr1-167517894-4	chr1	167517868	167518068	+	928.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51188.0	NM_001013382	240899.0	Mm.159799	NM_001013382	ENSMUSG00000040485	Lrrc52	4930413P14Rik	leucine rich repeat containing 52	protein-coding	5.6364004853029	5.64207576647971	6.03609011707208	5.75515635497144	4.62267723241445	4.64948513751286	4.91010920797475	5.04681732409217	-1.78997128011899	2.21191887939982e-08	1.09563099454975e-06
Merged-chr10-40258590-4	chr10	40258487	40258687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026113)	promoter-TSS (NM_026113)	-875.0	NM_001359492	67371.0	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	6.36631089529183	6.8633635842737	6.7761358391805	6.61957327481327	6.83071769522232	6.48680929122304	6.75548592238945	6.83918027221876	0.101516611130732	0.645689577720783	0.850934142345746
Merged-chr19-34043304-4	chr19	34043217	34043417	+	709.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172837, intron 9 of 9)	MIRb|SINE|MIR	-24041.0	NM_027340	70166.0	Mm.75602	NM_027340	ENSMUSG00000024770	Lipn	2210418G03Rik|Lipl4	lipase, family member N	protein-coding	4.26135762475174	3.92407367629527	4.00397912031324	3.48613090451113	3.92010096812604	4.17618192301197	4.03264670935401	3.79565349548144	0.136508415849502	0.778015096201835	0.913487233105429
Merged-chr9-116101413-4	chr9	116101319	116101519	+	899.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	73944.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	4.3591248010155	4.32022390178999	4.51546121438865	4.4921182909244	4.28869674901387	4.03991139822311	4.20995152026453	4.1786818537451	-0.586569703139309	0.133187483190575	0.406472231960807
Merged-chr7-101360645-4	chr7	101360551	101360751	+	968.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	12582.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	4.75829615402896	5.13689969819218	4.71927485954083	4.52783868738903	4.88230435785538	4.63326627970986	5.10461207544332	5.06692195191875	0.280941744370252	0.433758863996185	0.723256357491443
Merged-chr7-135598043-4	chr7	135597921	135598121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316680, intron 1 of 20)	intron (NM_001316680, intron 1 of 20)	4540.0	NM_001316680	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	5.4377135721053	5.47353075437682	5.78970125201988	5.44593193899898	5.35982908003471	5.55535980190265	5.80272260139765	5.03116648350624	-0.128418226535699	0.677352854677697	0.86764502668989
Merged-chr17-22360765-4	chr17	22360674	22360874	+	854.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347330)	promoter-TSS (NM_001347330)	626.0	NM_176962	319615.0	Mm.442162	NM_176962	ENSMUSG00000033972	Zfp944	6330416L07Rik	zinc finger protein 944	protein-coding	4.41060162892265	4.26460073138573	4.3248682303412	4.40428948564218	4.41952954083961	4.53978625188584	4.39131775751684	4.32221110234237	0.149095426028938	0.686808255607337	0.871911336696059
Merged-chr4-124645349-4	chr4	124645254	124645454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12292.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	6.14783396015147	5.96095074555784	5.96477035084932	5.97385119377113	6.11910199259209	5.70113455924386	5.69379899726125	6.14451882337134	-0.106207440588926	0.67987187022204	0.86857902618052
Merged-chr17-50490303-4	chr17	50490197	50490397	+	937.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19250.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	4.71331381486813	4.78674096494419	4.50773230321517	4.95776212764341	4.71925224993377	5.1251511980632	4.53108198398877	4.26048269221398	-0.13837871396622	0.725538738501238	0.890921883682774
Merged-chr14-17746683-3	chr14	17746561	17746761	+	745.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	L1MB8|LINE|L1	85701.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	3.53773309480785	3.67207602818553	3.64363977223187	3.69120295190533	3.6031453731543	3.65361864290564	3.28735215418629	3.48025874896778	-0.404804865920113	0.414352715327927	0.709044594374843
Merged-chr15-5244214-4	chr15	5244136	5244336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008965)	promoter-TSS (NM_008965)	-49.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	6.94576227160551	6.70283250699768	6.71375452305046	6.4785873753377	6.88926014074163	6.90527612620517	7.24524939965988	6.66313882252136	0.333021224519661	0.142162404259692	0.419579876176779
Merged-chr5-137285236-2	chr5	137285136	137285336	+	914.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3018.0	NM_009599	11423.0	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	2.56790915116033	2.91723929763437	2.48567564513207	2.53430448419971	2.60125468950877	3.41848841673796	2.84682407706092	3.24861394161408	1.86230074739235	0.011057734620592	0.0847596912081758
Merged-chr10-54032521-3	chr10	54032420	54032620	+	673.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	43276.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	3.66185294959615	3.56130620300714	3.61237467991792	4.04077633567645	3.2638301658913	3.30706616151746	3.37815903101838	3.3885047974947	-1.4229559067127	0.00783724044603453	0.0662368722047366
Merged-chr8-123280768-5	chr8	123280676	123280876	+	954.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016925, intron 30 of 42)	L1MB7|LINE|L1	-26554.0	NM_028200	72325.0	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	2.96868205407948	2.87754836212603	2.96902227192087	2.45755746096137	3.57730530359366	3.6179488484582	3.27281904001775	3.44457533315738	2.84129340432692	1.7336101797599e-05	0.00044969620621403
Merged-chr4-109431083-3	chr4	109430995	109431195	+	919.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145948, intron 9 of 17)	intron (NM_001145948, intron 9 of 17)	15448.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	3.24668692562631	3.62652213480608	3.59623659624953	3.56516161427275	3.3520172014661	3.54805294140967	3.36205367176622	3.73834791787504	-0.0490797228675373	0.924741762739822	0.972219752892159
Merged-chr1-85698351-3	chr1	85698244	85698444	+	660.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013673, intron 14 of 19)	intron (NM_013673, intron 14 of 19)	38262.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	3.08237929752763	3.13108028017849	3.14160780367988	3.16889021440633	3.1154774785249	3.12900154251132	3.07199413537094	3.08124673763626	-0.137010089178803	0.803801698680732	0.924368706848628
Merged-chr1-7842659-3	chr1	7842557	7842757	+	869.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	753737.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	4.26756976274147	4.83302471517475	4.51018762396245	5.08742568958203	3.38715405491131	3.72082780154193	3.89869009054157	3.44116733446587	-3.17512340986468	7.65437210674228e-09	4.14950915602291e-07
Merged-chr13-40921486-4	chr13	40921397	40921597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	3863.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	7.31892059249912	7.80784643484942	7.63236983011195	7.71282246513179	7.45147504763616	7.47607950225938	7.48142453587671	7.36765753542025	-0.255035097764004	0.16822737550637	0.460191392541484
Merged-chr4-32575397-4	chr4	32575310	32575510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001109661, exon 4 of 5)	exon (NM_001109661, exon 4 of 5)	-3748.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	6.61802466273154	6.40670935953404	6.90006600357309	7.11829160350317	6.30955338531312	6.37255945289683	6.83971444778667	6.74861574700603	-0.309661902012491	0.231411925380617	0.540941525013692
Merged-chr17-65630278-4	chr17	65630170	65630370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9486.0	NM_153519	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	7.1818903099158	7.12907175806543	7.29723467814411	7.00883816454915	7.03480242542394	7.02633840067195	7.04565620179638	6.48616296992935	-0.316231218245758	0.140759420338937	0.41732231461186
Merged-chr19-10305810-4	chr19	10305701	10305901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198114)	promoter-TSS (NM_198114)	-924.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	6.64478556116384	7.07411659560491	6.63084351008489	6.79764856665948	6.48050418300591	6.39984941301605	6.38287326142192	6.03664515904672	-0.671058746881566	0.00395643298244204	0.0397200202055348
Merged-chr18-84092458-7	chr18	84092335	84092535	+	829.8809809999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146090, intron 1 of 1)	intron (NM_146090, intron 1 of 1)	4277.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	3.30689625871375	3.40979258976478	3.78765922917717	3.18738133102246	3.44302672754919	3.60507403730288	3.63076213303693	3.64434820492058	0.490969678110482	0.349700687875026	0.657179883362987
Merged-chr9-64789496-4	chr9	64789397	64789597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21514.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	7.00201383754239	6.85083424733456	6.8325553235666	6.47937200421903	7.08654423076167	7.28513814359775	6.81176270123242	7.03456040808819	0.382994415918436	0.0828138289611261	0.312629084254364
Merged-chr1-155416308-4	chr1	155416216	155416416	+	865.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 1 of 14)	intron (NM_011273, intron 1 of 14)	1128.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	4.74554254288008	4.29160092321978	4.30045051703821	4.54498894641983	4.30235951913388	4.77270287174235	4.28187973212322	4.77676875510677	0.140150931428618	0.725638265672623	0.890921883682774
Merged-chr9-90060082-4	chr9	90059983	90060183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 1 of 10)	B4A|SINE|B4	5816.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	6.48757168569801	6.35617927830778	6.40392788752802	6.61741408364399	6.53466186481561	6.32990388365172	6.45555270940673	6.12648766218773	-0.148497276831297	0.512392670233817	0.775817701566463
Merged-chr1-120076498-4	chr1	120076397	120076597	+	980.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-2717.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	5.16544572731225	5.26511482219039	5.03195199497438	5.29889356910102	5.13764456636526	5.0201484447972	5.0078275340397	5.39481324393517	-0.101108924009145	0.741203625168789	0.898139463026673
Merged-chr2-156411498-3	chr2	156411401	156411601	+	988.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-9408.0	NM_001291122	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	4.09209675545685	4.58193558577165	4.25004205331683	3.59489494841131	4.7204491402258	4.76903993450546	4.78156519940673	4.5932091816588	1.25499207867657	0.00444041336746788	0.043493536938166
Merged-chr11-89100656-4	chr11	89100557	89100757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26816.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	5.88694175806542	5.96348354842907	5.09455484414707	5.38917983662249	5.79651212302636	5.79743461450015	6.23083971628972	5.56156432706574	0.397061591199459	0.224230142355691	0.532459626446563
Merged-chr7-133050820-4	chr7	133050716	133050916	+	860.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	31044.0	NM_001347623	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	4.40223731243917	4.2836862037255	4.14207169800733	4.55995232470507	4.39789619251324	4.16566059746295	3.97302213094218	3.98651586879796	-0.525683228037293	0.214952514209969	0.520943309804269
Merged-chr12-71137186-4	chr12	71137111	71137311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286203)	promoter-TSS (NM_001286203)	363.0	NM_001163378	76967.0	Mm.87290	NM_029818	ENSMUSG00000034601	2700049A03Rik	Ta3|Talpid3|mKIAA0586	RIKEN cDNA 2700049A03 gene	protein-coding	5.72048533504814	5.57995082497681	5.69737590696021	5.61176757739544	5.58861087886489	5.82146873146239	5.13533583444472	5.59205949697406	-0.158937131172158	0.575004982133432	0.812714051296178
Merged-chr12-100006960-6	chr12	100006920	100007120	+	871.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	42521.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	3.37624849120804	3.10596778022208	3.0564852015631	3.36786665377078	3.09123123404135	2.89393918358361	2.70638447887239	3.05497952106459	-1.19095556301536	0.06356449477862	0.267656008864612
Merged-chr8-85083244-4	chr8	85083144	85083344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010764)	promoter-TSS (NM_010764)	-25.0	NM_010764	17159.0	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	7.448597722911	7.37863568972709	7.27776887147229	7.46216849965089	7.38391652580015	7.45481307709943	7.54693177767624	7.32573420533404	0.04069620631225	0.816435982938608	0.929362464563434
Merged-chr2-31256788-4	chr2	31256682	31256882	+	848.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019681, intron 1 of 7)	intron (NM_019681, intron 1 of 7)	10859.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	3.88357894678651	4.4354606716481	3.77318467371382	3.98065055628488	3.78165263973199	3.70740150955466	4.01711075131864	4.39941492909822	-0.109045286205969	0.825074518033586	0.932930565831813
Merged-chr1-64617241-4	chr1	64617135	64617335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025964)	promoter-TSS (NM_025964)	-67.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	6.45658570265837	6.57598993377398	6.27032850919838	6.50028533124383	6.5831982013968	6.66890632588323	6.98136257024682	6.97756433392756	0.505080920443028	0.0225019077829221	0.138580663670527
Merged-chr13-34875973-2	chr13	34875895	34876095	+	950.666626	f0_balb.idr|f0_c57.idr	intron (NM_013830, intron 1 of 14)	CpG	501.0	NM_013830	19134.0	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	4.74472418386485	4.84316486941405	4.66751999433597	4.80049694708108	4.80080767429919	4.717128171071	4.56388932756368	4.91839320377955	-0.0233782230119641	0.944559920001939	0.980084703068821
Merged-chr4-19942413-4	chr4	19942301	19942501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19835.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	7.08587769919285	6.89607538993282	7.54163480584626	7.80663578112387	6.68418383486021	6.72481531503713	6.85928228705437	7.1057080812597	-0.742433339439075	0.0037142247841703	0.0377894233722782
Merged-chr10-128535994-4	chr10	128535881	128536081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10122.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	6.51818241507346	6.79694537702535	7.02670936078853	7.22703552936477	7.01228423542793	6.6617832854117	6.78506845138226	7.0097770096386	-0.0734323552522812	0.755090653578002	0.903607895612451
Merged-chr19-43880402-1	chr19	43880302	43880502	+	541.0	f0_balb.idr	promoter-TSS (NM_001306088)	promoter-TSS (NM_001306088)	-634.0	NM_001306088	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	3.46424744103741	3.18966676107887	3.09470453528508	3.00652562530852	3.0621706859066	3.00510263931981	3.19924025531289	3.03049367630295	-0.459508601890111	0.431154274593745	0.721486037975084
Merged-chr11-75654173-4	chr11	75654073	75654273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080774, intron 1 of 31)	intron (NM_001080774, intron 1 of 31)	-1842.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	8.12993894853032	8.03756681139687	7.79959683465501	7.7237332684818	7.75579477852538	8.00768754917114	7.69834201147999	7.65510355243425	-0.185790523220012	0.317222998280739	0.629046268132741
Merged-chr7-114415276-4	chr7	114415160	114415360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011055)	promoter-TSS (NM_011055)	6.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	5.72468316848916	5.2697170312005	5.57937793471118	5.80933086435144	5.40654279109875	5.29624616075977	5.41575639518642	5.46758091671323	-0.38686060926966	0.17977495613278	0.476031457258849
Merged-chr12-80259679-7	chr12	80259567	80259767	+	874.38092	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	CpG	704.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	3.87504181451396	3.87746952668498	3.61608830058958	3.83862191704563	3.61199304767636	3.94789335297225	3.60259380374363	3.72415396874248	-0.256905724936043	0.581402319999229	0.816254905708753
Merged-chr13-34715574-4	chr13	34715465	34715665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-24077.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	7.73173085700124	7.84566344098914	7.97991897950632	7.85040069389529	7.15820817687692	7.16706599641405	7.53796856812706	7.34798441983821	-0.722394667521114	7.68359430676419e-05	0.00162095601411135
Merged-chr6-114362576-4	chr6	114362475	114362675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-35361.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	5.80582339999301	5.70028880543982	6.21121045139941	6.17661009541214	5.45969249087971	5.56739018666514	5.97429398679592	5.47868064971552	-0.597840574548982	0.0379846194153647	0.195044526429537
Merged-chr2-152294683-3	chr2	152294603	152294803	+	687.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024196, intron 1 of 7)	intron (NM_024196, intron 1 of 7)	831.0	NM_024196	67231.0	Mm.288733	NM_024196	ENSMUSG00000027465	Tbc1d20	1110028I04Rik|2810442O16Rik|AI414693|bs	TBC1 domain family, member 20	protein-coding	3.43264391024661	3.72156067689909	3.60284367810985	3.37622091999669	3.66584526143158	3.54791643299693	3.68898213225267	3.65270573582075	0.349775341017066	0.470754475828143	0.749405570544939
Merged-chr11-83600783-4	chr11	83600687	83600887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 1 of 8)	intron (NR_036453, intron 1 of 8)	-7700.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	5.77939755576646	6.14879457895017	6.26081943887067	6.18608124762679	5.85562500270561	5.70785053249261	5.91683977877465	5.94285747061155	-0.401938638370938	0.109562376190559	0.365493760831786
Merged-chr13-110600198-4	chr13	110600087	110600287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	205143.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	6.54591857787467	6.48225533285035	6.2455741768792	6.61798512195035	6.47799561769737	6.4225538845573	6.49784351385643	6.26097665827579	-0.103592771794664	0.639402023239495	0.847607151813091
Merged-chr12-76961653-4	chr12	76961595	76961795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361663, intron 1 of 4)	intron (NM_001361663, intron 1 of 4)	553.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	5.39441518504293	5.09032716349571	5.42404082505048	5.12342403853756	5.47162867634274	5.67956648365787	5.18264217658934	5.76494117058311	0.505554928169977	0.0935095344458086	0.334468098106443
Merged-chr5-88721694-4	chr5	88721578	88721778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026735, intron 1 of 5)	C-rich|Low_complexity|Low_complexity	807.0	NM_026735	68473.0	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	5.8972616142638	5.74945414700056	6.33154161691236	6.12786568926872	6.01933986574489	6.00193777290574	6.21442143328737	5.8704243109473	-0.0238045934585737	0.926734346309258	0.97311398085719
Merged-chr10-98708802-3	chr10	98708712	98708912	+	581.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-205830.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	3.02261928174994	2.96034711408152	2.96625142791577	3.09226025023631	2.66944653203871	2.81503759145377	2.89650127868323	2.7092141519353	-1.14228575983444	0.0705782156650454	0.284741076507525
Merged-chr14-49154036-3	chr14	49153924	49154124	+	719.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18222.0	NM_027492	70646.0	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding	3.29602628513409	3.35054849989797	3.23100186820053	3.42443251923683	3.54631009757142	3.64678688309761	3.56742314727714	3.81342262086743	1.01227507952467	0.0446556814462145	0.215767909674434
Merged-chr7-101947341-4	chr7	101947231	101947431	+	922.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-13474.0	NM_001162974	69358.0	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	3.93574824604789	3.4418081499166	3.67574085203092	3.87153049977933	4.29370966091605	3.73514583433658	4.00916879323489	3.83606288679758	0.685170437998459	0.160427999193687	0.448621443584546
Merged-chr16-22683814-4	chr16	22683710	22683910	+	974.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26579.0	NM_001346673	110197.0	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	5.29762123687153	5.79095884603229	5.69583421949209	5.41104182560023	5.30144264467472	5.37848320082381	5.24102298807899	4.89786783935563	-0.606086451655891	0.0502913530950942	0.232628556144769
Merged-chr10-21696873-4	chr10	21696754	21696954	+	967.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6009.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	4.42134227091748	3.84528960871553	4.3375091237862	4.3446378481608	4.63190131759833	3.99421373354712	4.51746639954545	4.57279158430874	0.47059135425926	0.276311427138716	0.588373801786181
Merged-chr19-46304647-4	chr19	46304516	46304716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177369)	promoter-TSS (NM_001177369)	-121.0	NM_001177369	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	8.55076901720492	8.85275998518073	8.69169348494798	8.25821464141077	8.49490561029674	8.77222626630286	8.46924397321696	8.55138418325163	-0.0326259151480345	0.859018498108154	0.946576014812915
Merged-chr8-11138457-3	chr8	11138352	11138552	+	963.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-130022.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	3.98395371770471	4.21391534619057	4.51894998845771	4.90642027571327	3.88702481028782	4.05286123407197	4.02182807328697	4.31974003072587	-0.96541908398424	0.0391704027187776	0.199079621215271
Merged-chr19-42129116-4	chr19	42129021	42129221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027106)	promoter-TSS (NM_027106)	-128.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	7.63318564158467	7.67280597903961	7.6261297794095	7.70797533655325	7.49578606197976	7.51248934608424	7.32973351334294	7.07282196323457	-0.391289941271533	0.0329298532352932	0.17810896834612
Merged-chr5-34949431-4	chr5	34949332	34949532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173402)	promoter-TSS (NM_173402)	-16.0	NM_173402	71729.0	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	7.0644836082211	6.74641722531688	7.12233953917459	6.88761636935494	6.9496686685127	6.8675649109277	6.9830451379963	6.51869336264797	-0.154544051855151	0.471642681137044	0.750006800577593
Merged-chr4-34494570-4	chr4	34494459	34494659	+	813.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56056.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	4.15769602035538	4.09240502960137	3.765982549437	4.15873461224766	3.80511205788481	3.63279353583905	4.05296859017361	4.19715290044528	-0.325671601685129	0.480756280299466	0.756125456193411
Merged-chr12-17711585-4	chr12	17711489	17711689	+	973.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	MTC|LTR|ERVL-MaLR	20780.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	5.83033708101799	6.45349508504014	6.00693552361961	6.25863601943943	5.38120078563245	5.35469204884489	5.82462586466588	5.2780225921941	-1.12917628759524	0.000109208534644617	0.00218435561432758
Merged-chr2-166675608-3	chr2	166675518	166675718	+	924.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	38214.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	3.63167416901679	3.4004989310169	3.82850833545763	3.91039101614857	3.49573853759412	3.69489362958343	3.32520443463471	3.73192083690341	-0.45783253079818	0.376440975327097	0.679183554569486
Merged-chr6-98332896-4	chr6	98332772	98332972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128092, intron 2 of 3)	intron (NM_001128092, intron 2 of 3)	9882.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	6.69503646021036	7.08537081461129	6.97665388822973	7.35691536937104	7.17434913688863	7.21857313093977	7.60192020025803	7.37549153324606	0.386076342744258	0.0846589703305991	0.316617519128201
Merged-chr10-19062248-4	chr10	19062126	19062326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46816.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	8.97520994179411	9.46249844283189	9.04487911692672	8.86211093130711	9.21246070595996	9.37750625954292	9.36078584424275	9.19982089511998	0.22638507487726	0.198105793463689	0.49959157742965
Merged-chr4-137372344-2	chr4	137372243	137372443	+	878.541626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-14584.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	3.19794553400972	3.14521780173858	3.37172225102142	2.97036997850009	3.47837115923431	3.31164653099544	3.05908724550612	3.614437753586	0.783441734381201	0.166114202248195	0.457180007581197
Merged-chr11-100575070-6	chr11	100574960	100575160	+	972.589294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146318)	promoter-TSS (NM_001146318)	121.0	NM_009923	12799.0	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	4.35741788132526	4.39229717051157	4.31390725301489	4.26769432949671	4.50823065365136	4.29801539763101	4.10354439738776	4.69536796577799	0.223678037167004	0.567730887759993	0.808331754798167
Merged-chr10-93589633-4	chr10	93589502	93589702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027246)	promoter-TSS (NM_027246)	56.0	NM_027246	69878.0	Mm.259642	NM_027246	ENSMUSG00000020018	Snrpf	2010013O18Rik|SMF|sm-F|snRNP-F	small nuclear ribonucleoprotein polypeptide F	protein-coding	6.89614164924581	6.74255834519327	6.74519358828616	5.57700000866577	6.21997448714299	6.54783744824918	6.24403815850496	6.40189314355205	-0.321613041182203	0.316518316361416	0.628477595692966
Merged-chr4-135292924-4	chr4	135292801	135293001	+	811.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20141.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	4.46638196218768	5.00238035897748	4.54900548996504	4.09375505076881	4.38315131013926	4.46363982750325	4.44656731008354	4.42128496128657	-0.305013876376539	0.467370853413246	0.746968519290045
Merged-chr11-64079533-4	chr11	64079423	64079623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033780)	promoter-TSS (NR_033780)	39.0	NR_033780	66456.0	Mm.124828	NR_033780	ENSMUSG00000087497	2810001G20Rik	AW045514	RIKEN cDNA 2810001G20 gene	ncRNA	6.52687575001183	6.55721063113897	6.77381904526686	6.82668115646551	6.7861906982548	6.81775947753531	6.66792200197586	6.52337194672974	0.0269944532852919	0.898728718778078	0.962303043708153
Merged-chr18-56675216-3	chr18	56675124	56675324	+	610.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32589.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	2.71005230246195	2.70013437115468	2.71032358243406	2.42669251470606	3.2483678391528	3.0925110980487	3.13604838069676	3.20037253792031	2.62233994404118	4.00406751160001e-05	0.000933220436830965
Merged-chr1-56795335-1	chr1	56795235	56795435	+	632.0	f0_balb.idr	3' UTR (NM_139146, exon 11 of 11)	3' UTR (NM_139146, exon 11 of 11)	-157884.0	NM_027661	71066.0	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding	3.32202731365179	2.82382033436273	2.91884116454956	3.05219074955374	2.55933455941358	2.82716819140948	3.02320984759121	2.72189200197325	-1.18955537376567	0.0841366474882136	0.315463676336049
Merged-chr11-111065273-2	chr11	111065173	111065373	+	727.583313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008425)	promoter-TSS (NM_008425)	-891.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	2.76084923383163	2.72046921771796	2.88139846368611	2.31387239017056	2.81601768090012	2.87049910804857	2.7509700871489	2.55654173610564	0.339158567404252	0.633506295484014	0.844679016301825
Merged-chr2-122611288-4	chr2	122611142	122611342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025961)	promoter-TSS (NM_025961)	35.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	7.17186585179854	7.26871276531688	7.21754510554891	7.28714038123221	7.00911572644724	7.11494425007993	7.25532448552744	7.17933591625961	-0.140733923357177	0.439237720574123	0.727165989364937
Merged-chr4-139622768-4	chr4	139622678	139622878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175438)	promoter-TSS (NM_175438)	-116.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	7.2895268213963	7.31824417654719	6.50097593002713	6.71523206218234	7.66475363219195	7.55891290327959	7.59902728742526	7.43375199439833	0.767269694575275	0.00119441030588212	0.0155140385332817
Merged-chr1-173423085-4	chr1	173422982	173423182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 1 of 8)	intron (NM_001013779, intron 1 of 8)	2478.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	5.75999448444247	6.07660798850966	5.22527848027109	5.61215032556555	5.98675759491874	5.93577008646667	5.77912085314302	5.57423857797114	0.208803606430004	0.483850890299999	0.758089863981149
Merged-chr5-64202476-3	chr5	64202376	64202576	+	924.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-27881.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.0241711668035	4.36645045429095	3.97114272835443	3.9798491316146	4.34576916007499	4.43497621522816	4.24489662674826	4.34577205185574	0.624070069091508	0.119590875156179	0.382663920105268
Merged-chr1-118311333-4	chr1	118311255	118311455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153836)	promoter-TSS (NR_153836)	-9.0	NM_011650	22099.0	Mm.426637	NM_011650	ENSMUSG00000026374	Tsn	2610034C24Rik|AU040286|C3PO|TB-RBP	translin	protein-coding	6.87876446039941	6.99946463115581	7.09570528349523	7.15685283711094	7.08510880726278	6.91105093648855	7.12782208367351	7.03105945697493	-0.00138756412083556	0.994212248543406	0.997871254675415
Merged-chr8-25192076-3	chr8	25191976	25192176	+	856.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177089, intron 2 of 12)	intron (NM_177089, intron 2 of 12)	9466.0	NM_199323	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	3.43215083532371	3.35868566417772	3.48633359293548	3.67529434455814	3.36382723742029	3.30242754980571	3.47242303087537	3.31627262060595	-0.479873162108622	0.35529272415968	0.661852415937238
Merged-chr13-75707405-4	chr13	75707289	75707489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138953)	promoter-TSS (NM_138953)	-95.0	NM_138953	192657.0	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	9.02186011908339	9.07269176774324	9.09208384002517	9.27836440688476	9.14864964241856	9.1053958905594	9.3768058975366	9.08983136186546	0.075733101428774	0.617016452501353	0.835291303503194
Merged-chr5-112317559-2	chr5	112317459	112317659	+	894.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8810.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	3.24741742186583	3.37727937796601	3.3002435363556	3.07623486720661	3.07824468251113	2.83576801897482	2.87114312678755	3.07492250290686	-1.13420282306237	0.0631353506709371	0.266574393487165
Merged-chr8-83158632-4	chr8	83158524	83158724	+	675.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6728.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	4.1754386889483	4.48209363062789	3.98720888429065	3.85581192319295	4.04429921889478	4.21017986024815	3.81050666667939	4.03467314350308	-0.285915027111031	0.527695610393514	0.784527974856401
Merged-chr16-30789150-4	chr16	30789046	30789246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	189423.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	7.60183349783583	7.49582410808113	7.33940993222663	7.61823887865569	7.40554413149303	7.51671968640399	7.59093106979352	7.29168241890333	-0.0930817397936782	0.606605673705786	0.829508669190505
Merged-chr18-5101533-4	chr18	5101456	5101656	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347449, intron 22 of 30)	MRLTR33|LTR|ERVK	54967.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	5.31234561014574	5.98946781993804	5.9839525667616	6.1349836226429	5.13659477184705	4.81953697776795	4.92861086540869	4.98977658614321	-1.62990242364269	7.22013079268783e-07	2.59556408935721e-05
Merged-chr2-177840357-4	chr2	177840241	177840441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024849)	promoter-TSS (NM_001024849)	-5.0	NM_001024849	329575.0	Mm.425123	NM_001024849	ENSMUSG00000095362	Gm14325	-	predicted gene 14325	protein-coding	6.66695803837749	6.75611851231519	6.37138405246341	6.12591983434741	6.37706647587031	6.51128641239511	7.03106866086035	6.42134996645543	0.169276392938314	0.525767107755826	0.783367294725902
Merged-chr16-45967692-3	chr16	45967590	45967790	+	772.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152226, intron 2 of 2)	intron (NR_152226, intron 2 of 2)	22084.0	NR_152227	100503378.0	Mm.387133	NR_152226	ENSMUSG00000085826	Gm15638	Gm41457	predicted gene 15638	ncRNA	3.55936847935146	3.69293875342386	3.50373043339719	3.82116420932358	3.41717130138362	3.55927900137555	3.69908622871923	3.55792671884329	-0.335248843395031	0.496554753217511	0.766504104861513
Merged-chr12-76957859-4	chr12	76957754	76957954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146176, intron 1 of 3)	intron (NM_001146176, intron 1 of 3)	4394.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	6.74829235134554	6.63666260380121	6.50929585365379	6.91931168638164	6.85199924301042	6.68708709655944	7.03367533498935	6.93363927176159	0.221237393959619	0.299375693002951	0.611562066856898
Merged-chr2-16155386-3	chr2	16155246	16155446	+	672.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 35 of 38)	L1MC4|LINE|L1	-200958.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	3.151159161987	2.9857371963477	2.81176252712544	2.90762929265402	2.94713392226034	3.48973349570925	3.25292505053363	3.46752875309895	1.29562701322939	0.03003646499849	0.167420950832226
Merged-chr14-67072467-4	chr14	67072397	67072597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205188)	promoter-TSS (NM_001205188)	-26.0	NM_001205188	71978.0	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	6.56628109603674	6.82784779852366	6.58386233628586	6.36540198226714	6.92581066490875	6.69409129814422	6.79975842740586	6.86906171495117	0.34840596956208	0.104930254720283	0.35632033780521
Merged-chr11-86658041-4	chr11	86657940	86658140	+	901.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 5 of 11)	B3|SINE|B2	13235.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	3.79918991625527	4.1802448507108	4.33147050436454	4.16527011887586	3.97018191451568	4.33303067815519	4.14400667830443	4.06618695979234	-0.0172512617187757	0.967794368569157	0.988579929904943
Merged-chr10-44590389-3	chr10	44590231	44590431	+	723.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131583.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	3.65038245550215	3.46736004376567	3.37011926725431	3.69753392640942	3.43627123052453	3.6609891959064	3.5317338862491	3.83456936902545	0.186247497402101	0.711397707555284	0.884405406929924
Merged-chr1-176223453-4	chr1	176223357	176223557	+	939.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357846, intron 1 of 8)	intron (NM_001357846, intron 1 of 8)	-9515.0	NM_001195816	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	5.11636677297773	5.07956253830453	4.66618995076222	4.79774842724712	4.64521425458028	4.88233215505161	4.83582595075181	4.62095706322917	-0.363486484459767	0.292104158189849	0.604491831856997
Merged-chr10-41594630-4	chr10	41594505	41594705	+	942.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 30 of 47)	MIRb|SINE|MIR	26589.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	4.59026706172334	4.53444043287407	4.4186514219654	4.82337549526555	4.87875517362626	4.50129998299496	4.44417191596616	4.77488646093756	0.120293124444555	0.747471840597201	0.900577171567557
Merged-chr14-52098575-4	chr14	52098465	52098665	+	854.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360183, intron 1 of 8)	intron (NM_001360183, intron 1 of 8)	5456.0	NM_001360178	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	3.9333632102625	3.91971039808285	4.12991428017573	3.92877665292832	3.88482921498932	4.20863478356082	4.27962098418035	4.29700546601743	0.507388364524966	0.229022384170528	0.53796264588342
Merged-chr2-75705361-4	chr2	75705249	75705449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010902)	promoter-TSS (NM_010902)	-686.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	5.73596306248819	6.07853384259173	5.8479482226656	5.8900167285391	6.86938504154981	6.82613090427658	6.73749638945186	6.44753036810337	1.24539437771563	7.78810408068777e-08	3.40300466764441e-06
Merged-chr2-91476364-4	chr2	91476272	91476472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001145857, exon 9 of 12)	exon (NM_001145857, exon 9 of 12)	18841.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	5.87605889799252	6.06704991232029	5.99224316176795	6.10104738140014	5.74569322873032	6.10050670572722	6.32060095675761	6.07301474547665	0.0726140228666124	0.775129835387717	0.91224145329603
Merged-chr8-70805075-4	chr8	70804979	70805179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3370.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	6.52282293194674	6.67748299218988	6.24283039000775	6.41243631954197	6.89139961913864	6.88699050158529	6.99346357973499	6.33907063244742	0.475249312281966	0.045488619504615	0.218492101202442
Merged-chr17-33394682-4	chr17	33394585	33394785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009542)	promoter-TSS (NM_009542)	-48.0	NM_009542	22643.0	Mm.4417	NM_009542	ENSMUSG00000055240	Zfp101	AI316498|AI325003	zinc finger protein 101	protein-coding	6.65914336851509	6.47979042254773	6.26308262901184	6.65648389773476	6.49576817841215	6.59249488835084	6.69797716468531	6.59492072474076	0.0857760513292683	0.693236168236273	0.875262817171833
Merged-chr8-83103201-4	chr8	83103155	83103355	+	971.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62097.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	5.20468671896743	4.98810740785873	5.3130164200301	5.26693517594934	4.66843322360485	4.8301570510036	4.34411815660338	4.46293305495844	-1.24367097222763	0.00036657528655293	0.00597520850896627
Merged-chr7-80504896-3	chr7	80504794	80504994	+	779.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042527, intron 5 of 21)	L3|LINE|CR1	30104.0	NM_007550	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	3.86867045746065	3.58334409532695	3.51636999045691	3.52339212510447	3.49090876830223	3.79832671148789	3.5591968418118	3.62544813748805	-0.0184075219813717	0.969882495407056	0.989114781009798
Merged-chr13-47193900-4	chr13	47193811	47194011	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170643)	promoter-TSS (NM_001170643)	-92.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	6.12473957549412	5.92956351370456	5.75319217204139	6.42494037366006	5.26753145371819	5.37038178509539	5.23353705858566	5.22006676128323	-1.39405812368429	1.72848246119155e-06	5.74377465476906e-05
Merged-chr17-25570841-4	chr17	25570748	25570948	+	877.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045176)	promoter-TSS (NR_045176)	37.0	NR_045176	72834.0	Mm.33042	NR_045176	ENSMUSG00000091475	2810468N07Rik	-	RIKEN cDNA 2810468N07 gene	ncRNA	4.25697662752427	3.84049927173285	3.84150951152628	4.28693584090287	4.07728904123267	4.01625191646109	3.82655045997175	3.94411752057435	-0.300965778096155	0.503430537382352	0.770381746164637
Merged-chr3-108726575-4	chr3	108726469	108726669	+	983.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-4270.0	NM_029522	76123.0	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	4.96059074409277	5.07276739855221	5.06158340869724	4.89246053827481	4.91339461722811	4.91115573193672	4.58284426798698	5.26449885829951	-0.104637841379899	0.756334372983498	0.904248123472918
Merged-chr2-25357941-4	chr2	25357842	25358042	+	969.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1610.0	NM_031843	83768.0	Mm.21440	NM_031843	ENSMUSG00000026958	Dpp7	DPPII|Dpp2|QPP	dipeptidylpeptidase 7	protein-coding	5.63369841875014	5.82572205836517	4.68996104323153	4.6961395399908	5.34224513783563	5.68695704634022	5.17309304885204	4.82265213995324	-0.0422157990571638	0.92158539399061	0.9709178534782
Merged-chr12-110508106-4	chr12	110508011	110508211	+	840.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081457, intron 1 of 12)	MIRb|SINE|MIR	22372.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	3.96153272306785	3.93094790239559	4.10087813627494	4.00514936339063	3.70091821224999	3.68429718690138	4.24458987267444	4.05377437719318	-0.16728659507516	0.713585792691914	0.885457948749053
Merged-chr11-69097131-4	chr11	69097012	69097212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1837.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	8.32839371408208	7.83479542261435	7.805890546399	7.76170579954507	7.72225766608565	8.01403183944218	7.79102230910552	7.7612531193892	-0.161228962419661	0.412755180815438	0.707787832411092
Merged-chr3-122987109-2	chr3	122987009	122987209	+	606.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2662.0	NM_133857	99526.0	Mm.491248	NM_133857	ENSMUSG00000039701	Usp53	AA939927|Phxr3|Sp6|mKIAA1350|mbo	ubiquitin specific peptidase 53	protein-coding	2.99337885812747	3.02022052639356	3.12337662272129	2.96399412414762	3.50366389080231	3.51660646445478	3.11217271390042	3.1218102258359	1.18050116827534	0.0357939260508894	0.187950687411109
Merged-chr7-78895853-4	chr7	78895752	78895952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162939)	promoter-TSS (NM_001162939)	-75.0	NM_026531	68048.0	Mm.34109	NM_026531	ENSMUSG00000030609	Aen	2700083B06Rik|Isg20l1	apoptosis enhancing nuclease	protein-coding	8.34186994118549	8.34504064353084	8.18176567274102	8.30770290188494	8.21354452639389	8.22297790436366	8.63832515588556	8.26541871235272	0.0631374769232098	0.710768859804998	0.884203816607274
Merged-chr2-59207823-4	chr2	59207703	59207903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	46953.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	7.13343152113177	7.21981498695262	7.51679094988818	7.5722788559756	6.72185638391403	6.72624169103833	7.00387657221482	6.83388241264658	-0.767536211790919	0.000215529584957217	0.00386997420626172
Merged-chr14-122376818-4	chr14	122376718	122376918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029556, intron 4 of 7)	intron (NM_029556, intron 4 of 7)	74297.0	NR_033325	328479.0	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA	5.77627460471939	5.66433962631769	5.89928386686106	6.20940515102471	5.9700548325736	5.90254946208274	6.24577939439426	6.08862394165336	0.208037028961145	0.436027150482532	0.724953319104812
Merged-chr8-107291507-4	chr8	107291408	107291608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).3	intron (NR_039557, intron 2 of 3).3	-1962.0	NM_018823	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	6.65863923814469	7.24266504988331	6.68895743204483	6.11029623555988	6.41004652401242	6.69641597408464	6.34755438635564	5.88992298314096	-0.533667039946658	0.0826677327496622	0.312292036375555
Merged-chr5-122285842-3	chr5	122285740	122285940	+	955.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177242, intron 1 of 5)	intron (NM_177242, intron 1 of 5)	1442.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	3.89342288791516	3.819680671901	3.57611973849855	3.93193046461817	3.59834051610637	3.63089512525809	3.9665837057718	3.89164736355552	-0.123260108665419	0.794222319002524	0.920431871081515
Merged-chr7-90028685-2	chr7	90028585	90028785	+	730.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110364)	promoter-TSS (NR_110364)	-474.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	2.60276775523446	2.51242681915908	2.72399890869121	2.18894881223716	2.4558436815986	2.64547307076802	2.39130566145967	2.60172915328361	0.0467772839644893	0.949736275990368	0.982020052422586
Merged-chr7-80015563-4	chr7	80015467	80015667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9247.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	6.63304714877877	6.26212665881641	6.21543549450097	6.57035995227003	6.44148530495644	6.73310984313288	6.45980758752818	6.48836886786183	0.13178327424149	0.564735867868789	0.806932336425425
Merged-chr18-67116105-4	chr18	67116000	67116200	+	820.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177137, intron 1 of 11)	intron (NM_177137, intron 1 of 11)	-17460.0	NM_010307	14680.0	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	4.29606567284398	3.94617741733344	4.20295977872383	4.23620722427754	4.41572837326567	4.63605359312177	4.5574753931097	4.42285544782574	0.77369985696208	0.0439992266027191	0.213828116131297
Merged-chr18-66477445-6	chr18	66477298	66477498	+	884.319458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	18794.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	2.9775091605612	3.00459764181723	3.16235765775454	3.17040409586123	3.30420442500412	3.15005963626015	3.15068758231168	3.21676862736981	0.478258621592165	0.389014313849863	0.689363154966003
Merged-chr5-23844649-1	chr5	23844549	23844749	+	724.666687	f0_c57.idr	promoter-TSS (NM_025394)	promoter-TSS (NM_025394)	-504.0	NM_025394	66169.0	Mm.291868	NM_025394	ENSMUSG00000028998	Tomm7	1110020J08Rik|AW047273|Tom7	translocase of outer mitochondrial membrane 7	protein-coding	2.6616561672347	2.51639356990284	2.4981706388107	2.1533992342927	3.25483529576388	3.29621124698931	3.16085138592451	3.27640906739638	5.24321783276468	1.39786969506872e-08	7.22577828796636e-07
Merged-chr18-12230163-4	chr18	12230042	12230242	+	988.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008720, intron 1 of 24)	intron (NM_008720, intron 1 of 24)	6244.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	6.87405016739861	6.58793399475093	6.67600994929127	7.38515597986369	5.3833896445203	5.21974166160662	5.32810384178823	5.42392538679826	-2.49199195668013	1.08219524160723e-17	2.67463802438754e-15
Merged-chr13-113949953-4	chr13	113949815	113950015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 3 of 4)	intron (NM_172595, intron 3 of 4)	155407.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	7.21370973680973	7.01391139877195	8.15095988679718	8.53133151691762	8.13766290309988	7.02849680959334	8.42908440793696	7.91562963489927	0.117027056477988	0.840898882179184	0.939436873709166
Merged-chr9-77828708-4	chr9	77828568	77828768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	74133.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	8.44959938438344	8.25205451969078	8.63238357013905	8.51781669150068	8.59579731433632	8.68899644109629	8.6826749587556	8.54896243166188	0.200300945837512	0.202320009499184	0.504746975435225
Merged-chr11-5444414-3	chr11	5444301	5444501	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001080924, exon 1 of 9)	exon (NM_001080924, exon 1 of 9)	446.0	NM_001080924	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	4.48621970914444	3.78334653171038	3.93243664418976	4.05678330872129	4.01731588353118	4.50866936820424	3.86255816106629	3.93018026443621	0.0355471386190781	0.940359556046933	0.978565099998021
Merged-chr4-59878230-3	chr4	59878139	59878339	+	825.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 3 of 8)	intron (NM_172468, intron 3 of 8)	36817.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	3.68165082290222	2.92299327366186	3.59029204824703	3.65532334663039	3.18472289663305	3.31599082470347	3.25420070663312	3.26425216699801	-0.864451758884057	0.151786925265096	0.4355376708322
Merged-chr9-5308752-4	chr9	5308642	5308842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007609)	promoter-TSS (NM_007609)	-107.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	8.23672486039011	8.18641053028719	8.04087309466987	8.15133700096528	8.1159267264084	8.21846678725667	8.15288195586386	7.817362188509	-0.0906918339124035	0.587263561117045	0.819100437669827
Merged-chr6-134922964-4	chr6	134922864	134923064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009875, intron 2 of 2)	intron (NM_009875, intron 2 of 2)	2563.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	6.6635854586439	6.78506366842336	6.82972022976325	6.84573003145539	6.96082688676573	6.90458721578798	7.29561413742891	7.01963584569874	0.369394349815676	0.0655111095985043	0.272466432823429
Merged-chr6-87887845-4	chr6	87887733	87887933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017477)	promoter-TSS (NM_017477)	-107.0	NM_017477	54161.0	Mm.258785	NM_017477	ENSMUSG00000030058	Copg1	AU019265|BC056168|Copg|D6Ertd71e|D6Wsu16e	coatomer protein complex, subunit gamma 1	protein-coding	7.87455718143013	8.11771938555898	7.64374763638883	7.68528660910068	7.91231027034032	8.19732795626669	7.73130428629599	7.92787197479248	0.14176534482503	0.464068174126406	0.745211298509957
Merged-chr10-8240857-4	chr10	8240765	8240965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 7 of 7)	intron (NM_177387, intron 7 of 7)	277960.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	7.35493469693704	7.35979943204266	7.20090847832604	6.92147718927392	7.12912090668256	7.36657799288899	6.9754627332277	7.03126475094013	-0.106339721610809	0.610534011049319	0.831780430511034
Merged-chr3-103802383-4	chr3	103802268	103802468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040412)	promoter-TSS (NR_040412)	-761.0	NR_040412	100503157.0	Mm.445554	NR_040412	ENSMUSG00000084997	Gm15471	-	predicted gene 15471	ncRNA	6.66380479720167	6.67566778545884	6.50562221244532	6.79908463239601	6.5284167508685	6.53926754521625	6.66046423281032	6.55091174585143	-0.154680151999985	0.45480083632091	0.73853646176365
Merged-chr12-75817714-3	chr12	75817601	75817801	+	985.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005510)	promoter-TSS (NM_001005510)	-617.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	3.29221504037824	4.36071195064493	3.74045458660991	3.33728266243422	4.09662420554949	4.15924047423036	3.72492140899663	3.56396538904432	0.399768262205328	0.5041990566475	0.770626277304553
Merged-chr6-54163024-4	chr6	54162938	54163138	+	956.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	-101820.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	5.18874926663789	4.77731606735378	4.89588075010588	5.35280289485659	4.86518048198547	4.64852311062561	4.83563494808681	5.18602451087575	-0.37052287992238	0.294660088397756	0.606769959846783
Merged-chr9-41072312-4	chr9	41072207	41072407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	7199.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	5.17740271270374	5.23129718612119	4.76584889124179	4.92233306025592	5.33540525766283	5.55702271276976	5.01853739199508	5.51060608612084	0.62027057404807	0.0524848345532308	0.238710417806033
Merged-chr7-44985677-4	chr7	44985585	44985785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045521, intron 1 of 11)	intron (NR_045521, intron 1 of 11)	735.0	NM_001252476	15469.0	Mm.27545	NM_019830	ENSMUSG00000109324	Prmt1	6720434D09Rik|AW214366|Hrmt1l2|Mrmt1	protein arginine N-methyltransferase 1	protein-coding	5.61085995957568	5.96873484260906	5.83355885076467	5.23780955993495	5.86111713491266	5.58637072724172	5.75804736851071	5.68611862231764	0.0929728649117508	0.754448864819107	0.903310665426823
Merged-chr10-118102174-4	chr10	118102132	118102332	+	951.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39555.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	4.24295364234768	3.50900498441985	3.68953307641278	4.03388603814014	4.01526049706077	3.62171288545677	4.10707270369504	3.74395613113414	-0.0341556297234268	0.946511496203234	0.980920139816526
Merged-chr1-65111151-4	chr1	65111013	65111213	+	954.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175293, intron 5 of 7)	RLTR33|LTR|ERVK	-7750.0	NM_007774	12964.0	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	3.75286849244932	3.78830760204061	3.64332764865584	3.67282428023995	4.03512198544648	3.97538138576096	3.73834076734396	3.80291444231496	0.53947200546421	0.226757961672673	0.535390087036827
Merged-chr4-142020152-4	chr4	142020041	142020241	+	749.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131014, intron 1 of 1)	B4A|SINE|B4	2243.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	3.2604079873397	3.71837868352315	3.71095932632831	3.58888292389699	3.18592774706298	3.44047224514495	3.5453690642626	3.75521477391904	-0.291491953785722	0.590322839582018	0.820900039045998
Merged-chr8-56286831-3	chr8	56286711	56286911	+	960.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7741.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	4.11128678548318	3.43134346752026	4.50888982625838	4.82307806201398	3.70562899047036	3.79852198381366	4.22445697235804	3.73585518888203	-1.11087221498878	0.0550126502099554	0.245107854827042
Merged-chr2-166030388-4	chr2	166030268	166030468	+	988.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	37731.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	4.79100995094882	5.05128258539301	5.0316550078847	5.22443426458838	5.4336885704474	5.55363822145478	5.48508015101367	5.34952911550997	0.729379833008057	0.0158516735297113	0.109037396369449
Merged-chr13-59002369-4	chr13	59002267	59002467	+	857.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	194670.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	4.11825680081867	3.99230535561619	4.07317790222458	4.31842858239325	4.00967463738613	3.81686210007965	4.05566140383413	4.07072844328341	-0.396801950186696	0.351642741421915	0.658915881947835
Merged-chr4-138434702-4	chr4	138434614	138434814	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026689)	promoter-TSS (NM_026689)	42.0	NM_026689	68350.0	Mm.103413	NM_026689	ENSMUSG00000041241	Mul1	0610009K11Rik|AV000801|Gide	mitochondrial ubiquitin ligase activator of NFKB 1	protein-coding	5.67394534136473	5.82938738567344	5.17136851957973	5.17301482668919	5.43712818767744	5.77357945890801	5.43488328379021	5.83125217058781	0.238668795464794	0.451837584049181	0.736277967483341
Merged-chr7-64277123-3	chr7	64277027	64277227	+	891.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	-10543.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	3.67078913916939	3.42322848482351	4.47258922348918	4.78938975805193	3.43045711566511	3.60784538838486	3.40467742600818	3.34361433520543	-2.24810180667887	0.000315687462991031	0.00528340416840786
Merged-chr10-75212071-4	chr10	75211969	75212169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145826)	promoter-TSS (NM_001145826)	-4.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	8.412521948606	8.44874329358244	8.29924261724236	8.30144895005514	8.41032676229326	8.76226851087935	8.6902948511592	8.2353176850046	0.219043554290121	0.211167106100748	0.515762969934016
Merged-chr5-91402907-3	chr5	91402812	91403012	+	970.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007568)	promoter-TSS (NM_007568)	82.0	NM_007568	12223.0	Mm.2024	NM_007568	ENSMUSG00000082361	Btc	Bcn	betacellulin, epidermal growth factor family member	protein-coding	4.23748546635004	4.11000517424646	4.08191388011571	4.05832003859771	3.38944658668948	3.49896733784111	3.43862379300799	3.57664232146594	-2.06507356813135	3.65968126880308e-05	0.000860978512774654
Merged-chr2-117989361-4	chr2	117989229	117989429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	121873.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	5.91145855862889	5.98117928877207	6.46098500569542	6.07057540148646	5.67764487365337	5.83060100277666	6.28253599833061	6.3104573329116	-0.111719972318139	0.692225684411375	0.87482210361352
Merged-chr15-25773944-4	chr15	25773849	25774049	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001353141)	promoter-TSS (NM_001353141)	-64.0	NM_001353141	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	4.6737039717769	5.10946093792516	4.97006356816004	5.06161024583597	4.94446202420264	4.30637734059671	4.94582198732271	4.75188753009164	-0.402729977457022	0.271474531503311	0.583222139604812
Merged-chr8-70343920-3	chr8	70343845	70344045	+	859.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030680, intron 2 of 23)	intron (NM_030680, intron 2 of 23)	9334.0	NM_030680	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	3.39751689401639	3.76768801170596	3.57097593295556	3.28236757507894	3.68906303531373	3.24018034314061	3.32344870303821	4.05555117653839	0.328771626878307	0.564140829683621	0.806599371831898
Merged-chr8-43443077-4	chr8	43442976	43443176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85061.0	NM_001009547	382007.0	Mm.55952	NM_001009547	ENSMUSG00000063900	Adam26b	-	a disintegrin and metallopeptidase domain 26B	protein-coding	6.29907585005645	5.89178424661764	6.37163886568024	6.44920612928399	6.32287117989475	6.04517245399113	6.45441017531326	6.33188843263138	0.0332887861191706	0.893174943660561	0.960067775059052
Merged-chr2-118111226-4	chr2	118111133	118111333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011580)	promoter-TSS (NM_011580)	-31.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	5.52629988262899	5.55457248889762	5.12569726066666	5.40964815848063	5.47736773542704	5.30462875031421	5.23730046916422	5.86792848254926	0.140979181426779	0.644786255293309	0.850540242207308
Merged-chr11-113335029-1	chr11	113334929	113335129	+	1000.0	f1_balb.idr	intron (NM_027216, intron 6 of 9)	ORR1E|LTR|ERVL-MaLR	-125360.0	NR_040276	319871.0	Mm.383743	NR_040276	ENSMUSG00000085421	4732490B19Rik	-	RIKEN cDNA 4732490B19 gene	ncRNA	4.96184324644794	4.67269312260926	4.75547803468022	4.6436854364295	3.7205187100966	3.98825115223474	4.02287774681454	3.92085115276118	-2.18126991822378	4.02180801807775e-07	1.52108540339403e-05
Merged-chr2-167477228-4	chr2	167477109	167477309	+	932.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_148929)	TTS (NM_148929)	-15436.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	4.42743110959879	4.20484446465451	4.50912755226799	4.4869043103881	4.39299272741429	4.32648352990668	4.40804668684928	4.54478114761733	0.00919428260402167	0.980360492441697	0.99281244474172
Merged-chr17-32113672-4	chr17	32113567	32113767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22244.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	6.74474475583535	7.10679821227166	7.02656891615283	7.4198631588126	7.19080457205885	7.19102236417309	7.18782715310083	7.19727693938123	0.102905225873838	0.629949845373669	0.842536537521168
Merged-chr5-104459571-4	chr5	104459474	104459674	+	936.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008861, exon 1 of 15)	5' UTR (NM_008861, exon 1 of 15)	117.0	NM_008861	18764.0	Mm.6442	NM_008861	ENSMUSG00000034462	Pkd2	C030034P18Rik|PC2|TRPP2	polycystic kidney disease 2	protein-coding	4.55824491365998	4.69916595679155	5.14202079933626	5.24954976874368	4.80376718393441	4.54595213672381	4.78684264521332	5.222962658182	-0.186245333809286	0.629256775675466	0.842098331915745
Merged-chr1-183298193-4	chr1	183298070	183298270	+	856.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027861)	promoter-TSS (NM_027861)	-877.0	NR_151660	71678.0	Mm.392270	NM_027861	ENSMUSG00000046836	Brox	0610010K06Rik	BRO1 domain and CAAX motif containing	protein-coding	3.80826424125145	3.61112829142769	3.50083613899119	3.56046334835541	3.81900647872462	3.3594646443781	3.23673820780243	3.89428015291947	-0.0249908185405686	0.963147973078693	0.986827734965212
Merged-chr5-8056537-4	chr5	8056460	8056660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080974)	promoter-TSS (NM_001080974)	18.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	6.92889817717504	6.75361391551708	6.83819167805023	6.9555901882371	6.45377622071587	6.70878182127408	7.02651935430179	6.76332961095608	-0.182146163880027	0.401280356540881	0.698902185040211
Merged-chr17-47595707-4	chr17	47595610	47595810	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 4 of 6)	intron (NM_001081635, intron 4 of 6)	2243.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	4.792752609046	4.73028005704385	4.75816166118253	4.95485534993578	4.51405310400132	4.12722241905366	4.54381835113404	4.75497784060776	-0.677348336238908	0.0682025669341619	0.278803164867935
Merged-chr7-19147819-2	chr7	19147719	19147919	+	884.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026111, intron 2 of 6)	intron (NM_026111, intron 2 of 6)	1377.0	NM_026111	67369.0	Mm.234876	NM_026111	ENSMUSG00000030407	Qpctl	1810019P04Rik|BB101812|gQC	glutaminyl-peptide cyclotransferase-like	protein-coding	2.89944226649888	3.03182312715444	2.89975066392955	2.89341020355873	3.09706624536639	3.13928350445441	3.38418544486834	3.02742828445762	0.962141918401373	0.0929597893740091	0.33357198730702
Merged-chr7-24254725-4	chr7	24254658	24254858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018791)	promoter-TSS (NM_018791)	-36.0	NM_018791	54678.0	Mm.468052	NM_018791	ENSMUSG00000030486	Zfp108	-	zinc finger protein 108	protein-coding	5.59114780774185	5.64435472124786	5.96824316031216	6.21566425949006	5.96168070809711	5.74168219101809	6.09935388233763	6.10722017269603	0.136181180601895	0.627878390372951	0.841351605797479
Merged-chr7-38267843-3	chr7	38267675	38267875	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025390, intron 2 of 6)	intron (NM_025390, intron 2 of 6)	3573.0	NM_025390	66161.0	Mm.22284	NM_025390	ENSMUSG00000030423	Pop4	1110023P21Rik|Rpp29	processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	4.94659743447175	4.81535253174903	5.13773934780477	4.95020799320253	3.91690170211461	3.98999781498484	3.97182491429784	3.85845442493786	-2.56414923230923	1.60814358980875e-09	9.95356978947801e-08
Merged-chr13-20788207-4	chr13	20788102	20788302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5911.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	7.46076679007262	7.13778642286992	7.53603544116727	7.36450466383759	7.64615585777476	7.5402877004984	7.64249843055851	7.61753226896546	0.312449908920747	0.0807982952965898	0.308370000474317
Merged-chr6-87130265-4	chr6	87130163	87130363	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	25517.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	3.8390353406058	4.1939791834592	4.09594997822633	4.35461939127299	4.27309177531382	3.96003451895025	3.87983342623753	4.13909705252101	-0.175462079780595	0.692008597489689	0.87471864571853
Merged-chr12-79628195-2	chr12	79628097	79628297	+	705.0	f0_balb.idr|f0_c57.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	296536.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	3.51479843942779	3.65061473665514	3.458814834775	3.54591548923336	3.58236894053024	3.38586366858395	3.32690185916082	3.85024186944726	0.0309051069888716	0.951660005214153	0.9827990291829
Merged-chr11-116658009-4	chr11	116657906	116658106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163318, intron 2 of 4)	intron (NM_001163318, intron 2 of 4)	898.0	NM_001163318	100038570.0	Mm.390349	NM_001163318	ENSMUSG00000075410	Prcd	Gm11744	photoreceptor disc component	protein-coding	6.67723705190791	6.52933819875081	6.31552184007854	6.39743470080868	6.62949116052559	6.56606034261194	6.40978938397331	6.29176575153432	0.00757923934826812	0.972892783167173	0.99024447070808
Merged-chr10-121498097-4	chr10	121497997	121498197	+	865.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21847.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	4.62894522398293	4.88698426488593	4.95071118089453	5.1170501301845	4.26750250879857	4.49117894657904	4.72336430168714	4.4535572432197	-0.93750729956717	0.0110297480965645	0.0846454382496347
Merged-chr5-125385363-7	chr5	125385255	125385455	+	870.7041019999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019639)	TTS (NM_019639)	4662.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	4.19316568936189	4.5597619640562	3.89192462753438	3.28689531186241	4.65053973039379	4.17920976012765	4.03369399865814	3.99795741201818	0.419199229061626	0.44691023312192	0.732575443506555
Merged-chr5-105395411-4	chr5	105395297	105395497	+	836.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20378.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	4.1581449969099	4.36539523024503	4.38031844497646	4.1434531714959	4.55848741064264	4.28449248006287	3.98916546858946	4.24941218522344	0.0919338847513922	0.822945188233816	0.932185203682946
Merged-chr10-117063896-4	chr10	117063819	117064019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358767)	promoter-TSS (NM_001358767)	-67.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	8.07623036337649	7.96874879681974	7.62674210296622	7.73920117330596	8.3442884528706	8.16892265156025	8.28766637002066	8.15886983331612	0.493456115935005	0.00475670814345685	0.0458218607312377
Merged-chr5-129006408-4	chr5	129006304	129006504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152615, intron 1 of 11)	B3|SINE|B2	2168.0	NR_152615	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	6.11558761241317	5.96013119550161	6.46548388738614	6.38418530646904	6.23272134724335	6.22860717296054	6.33285287782686	6.30773306092054	0.0317315063427168	0.893927616229864	0.960450328240811
Merged-chr8-126584441-5	chr8	126584344	126584544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8992.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	7.46291650864716	7.48484810060348	7.37963684950448	7.3122986549256	7.10845240857896	6.97479130696879	7.09752707425515	7.2085116036884	-0.413937041680033	0.0222610622234323	0.137573382522524
Merged-chr13-90930079-3	chr13	90929982	90930182	+	881.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6960.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	3.92184855455674	3.34210643735999	3.68156036344553	3.98022566699284	3.54047977787868	3.56570342344199	3.76738332933669	3.78122710401566	-0.293383750905721	0.566911583913348	0.808119800518362
Merged-chr2-25622031-4	chr2	25621931	25622131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109993)	promoter-TSS (NM_001109993)	-26.0	NM_001109993	51875.0	Mm.271147	NM_001040130	ENSMUSG00000026939	Tmem141	1110065P14Rik|AI663999|D2Ertd217e	transmembrane protein 141	protein-coding	7.50633165767355	7.60765374836503	7.36196106369023	7.60596192447385	7.36250519840971	7.67508670838697	7.44284740749428	7.34656252051341	-0.0953305343723631	0.600356018651987	0.826767290075753
Merged-chr18-39619503-4	chr18	39619408	39619608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132263.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	6.92032718166434	7.26213956958852	7.18460923477479	6.80150469299218	7.1050804467589	7.37157363872233	6.80430644465687	6.49422470726096	-0.089185846263466	0.72050410370681	0.888297446229953
Merged-chr1-180971904-3	chr1	180971809	180972009	+	848.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 19 of 22)	B2_Mm2|SINE|B2	29391.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	3.59577850342957	3.7656693137958	3.54036125036914	3.86413280821439	3.57301257036269	3.59636182567621	3.63532349707897	3.64780091597278	-0.310286942303875	0.517329859685617	0.778803651723338
Merged-chr18-25487078-4	chr18	25487011	25487211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362310, intron 11 of 12)	C-rich|Low_complexity|Low_complexity	192637.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	6.21014023761808	6.00567108632307	6.04738241524697	6.38366473388751	6.25233389343073	5.96001415127208	6.43663681308903	6.14780333372429	0.0464550921103529	0.851013627930622	0.943813742025066
Merged-chr4-110668222-4	chr4	110668066	110668266	+	838.516663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284190, intron 3 of 12)	intron (NM_001284190, intron 3 of 12)	270468.0	NM_030231	78933.0	Mm.435620	NM_030231	ENSMUSG00000061298	Agbl4	4930578N11Rik|4931433A01Rik	ATP/GTP binding protein-like 4	protein-coding	3.51560989466109	3.66500262138431	3.77380981238283	3.83353938931933	3.3973172664977	3.74185084863462	3.50315172767382	3.5142510766058	-0.556981100470454	0.259765607787516	0.571563806638815
Merged-chr10-3741117-6	chr10	3741021	3741221	+	707.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159942, intron 1 of 16)	intron (NM_001159942, intron 1 of 16)	744.0	NM_001159942	213783.0	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	3.32043218313745	3.09889656164371	2.87986157094716	3.16993299990654	3.20894397655055	3.32131592695831	3.25347611737636	3.371273598767	0.595701692335883	0.286764635090375	0.598440833854164
Merged-chr11-115535996-2	chr11	115535896	115536096	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133354, intron 1 of 3)	CpG	234.0	NM_133354	170930.0	Mm.29923	NM_133354	ENSMUSG00000020738	Sumo2	SUMO-2|Smt3A|Smt3b|Smt3h2	small ubiquitin-like modifier 2	protein-coding	4.76860317669962	5.44399132362617	5.06512684270255	4.7512529282141	5.09226308862262	5.23843702261872	5.13486142068144	4.72415503086298	0.0529670290806847	0.882472278400729	0.95575354370667
Merged-chr1-88247993-2	chr1	88247893	88248093	+	836.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 26 of 41)	ORR1F|LTR|ERVL-MaLR	20973.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	3.18211726878699	3.01892506880645	3.24028240139429	2.99976407176071	3.05254497341476	3.35407479753743	3.04850269093569	3.44607242052791	0.483799108512131	0.39411482117421	0.693311907408667
Merged-chr9-61372295-4	chr9	61372202	61372402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083927)	promoter-TSS (NM_001083927)	-64.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	7.8556314876832	7.79859418394946	7.13502723422536	7.51167102690757	7.83265699873404	7.90683128420262	7.59369928233443	7.38171249029298	0.120586383124319	0.588510712066379	0.819757416324321
Merged-chr2-4453204-4	chr2	4453117	4453317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	52241.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	6.80973493052131	6.99980227709412	7.80609611720026	7.35501341869328	7.47484607561974	7.46472552898142	7.85658771092838	7.15832244461112	0.283210516062301	0.280281389366861	0.592308919118337
Merged-chr12-21370683-7	chr12	21370637	21370837	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291871, intron 1 of 18)	intron (NM_001291871, intron 1 of 18)	2895.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	3.69098009663924	3.31590147475752	3.48838800312466	3.42475632476616	3.50256642443109	3.48654316341205	3.41930932718383	3.68929830724898	0.156801307068565	0.754612925313078	0.903385529220438
Merged-chr2-59882573-4	chr2	59882476	59882676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028118)	promoter-TSS (NM_028118)	30.0	NM_001159636	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	7.84190444696034	8.10660315506452	7.88868870324527	8.12115226468431	7.93516313969159	8.04374639384977	8.26395990159287	8.0824300946107	0.104063150004521	0.545513963436949	0.795940029589181
Merged-chr13-84348101-3	chr13	84348010	84348210	+	790.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125814.0	NM_175187	72745.0	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding	4.66905227869667	4.82462617456113	4.91228916390394	5.09267173384665	4.50066284566132	4.39979892967711	4.30273379515331	4.26773903909215	-1.14365953883398	0.00201418877706868	0.0235090024962276
Merged-chr3-97232532-4	chr3	97232414	97232614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5150.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	7.46045617600749	7.46006442558577	6.99904469641951	7.16505512961023	7.3202616637244	7.42871101240772	7.5133610975219	7.15627061047153	0.10404768942479	0.606192980890238	0.829351704182035
Merged-chr11-50025644-3	chr11	50025584	50025784	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 1 of 7)	CpG	353.0	NM_001290750	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	4.2221422833462	3.95959675283138	5.08353405735894	4.29440678181568	4.41697592223208	4.49939727250397	4.3479120456673	4.85303418802413	0.188490899311556	0.684832071459086	0.870922734353662
Merged-chr8-106443786-3	chr8	106443685	106443885	+	667.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28446.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	3.80780223857567	3.76042548288805	3.56633155701166	3.57422548518293	3.23113994982844	3.44747132624197	3.49817366659401	3.39388132226371	-0.974884799216973	0.056971874012665	0.250135764886965
Merged-chr2-26917029-4	chr2	26916917	26917117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013677)	promoter-TSS (NM_013677)	-487.0	NM_013677	20930.0	Mm.347512	NM_013677	ENSMUSG00000015790	Surf1	0610010F23Rik|Surf-1	surfeit gene 1	protein-coding	4.54760388980123	4.7305868924172	4.27875585936301	4.44274013139576	4.48444735990559	4.40746890516893	4.71356664096578	4.7676280175889	0.200983801183727	0.588369232480047	0.819675135431917
Merged-chr11-83658982-4	chr11	83658884	83659084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3600.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	6.35906807235278	6.29670565215477	5.98236041698003	6.1226332158034	5.855333338804	5.83662922414178	5.68443196600454	5.93324357031502	-0.573409070621388	0.0197505061210841	0.126993791796987
Merged-chr19-17356468-4	chr19	17356401	17356601	+	747.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	CpG	166.0	NM_173442	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	3.46830586876574	3.59256036008999	3.52688134473491	3.70164789804009	3.67040478450394	3.80480684881538	3.72159287530782	3.58083849651239	0.339200147877069	0.47577856864385	0.752548670862884
Merged-chr8-123253099-4	chr8	123252989	123253189	+	883.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028200, intron 1 of 14)	intron (NM_028200, intron 1 of 14)	-1106.0	NM_020497	57247.0	Mm.379084	NM_020497	ENSMUSG00000001065	Zfp276	AW048709|D8Ertd370e|D8Ertd377e|Znf276	zinc finger protein (C2H2 type) 276	protein-coding	4.23943778565018	4.52083706787369	4.46872296050614	4.67746992276931	4.21777770523289	4.51149292709596	4.44837384051019	4.76288070961243	-0.0167832917886181	0.965861882961568	0.988015506191476
Merged-chr10-21827100-4	chr10	21826980	21827180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55104.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	5.66966495409648	5.25429938746151	5.813920947244	5.73238287383838	5.92162487358571	5.6850358312041	5.56426610092762	5.53354562306055	0.0973474890444018	0.733706986461121	0.894624900644699
Merged-chr15-99970772-4	chr15	99970653	99970853	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284522, intron 1 of 15)	RMER6A|LTR|ERVK	688.0	NM_001284522	207214.0	Mm.28811	NM_001024526	ENSMUSG00000023025	Larp4	DXErtd793|DXErtd793e	La ribonucleoprotein domain family, member 4	protein-coding	5.39322981493687	5.24355606015712	5.18430522476294	5.30100285728227	5.29993159880257	5.11177863215533	5.33947690731862	5.27489662189098	-0.037626254229437	0.895603186399086	0.960922893202393
Merged-chr2-154548904-4	chr2	154548803	154549003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029305)	promoter-TSS (NM_029305)	-1.0	NM_029305	75480.0	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding	8.55953818512638	8.65654887370503	8.39082931909625	8.51051576177434	8.50447977359813	8.34608862251977	8.75057176377293	8.35838912175286	-0.0396153313148385	0.81221080662838	0.927446105799334
Merged-chr17-34105028-4	chr17	34104944	34105144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-9735.0	NR_046183	414076.0	Mm.473092	NR_046183	ENSMUSG00000098197	BC051537	-	cDNA sequence BC051537	ncRNA	5.65008978734396	5.5012670677651	5.15014317827026	5.41234198186309	6.25022433436939	5.63311214594928	5.74502654589338	5.94562677163752	0.81074625562735	0.00506600886034514	0.0479683321094743
Merged-chr17-69349445-1	chr17	69349345	69349545	+	761.0	f0_balb.idr	Intergenic	Intergenic	-33730.0	NM_001356283	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	3.58696218992204	3.30944312792324	3.37496192278624	3.79379993701637	3.29919568489752	3.08257279033484	3.36245493282103	3.58534590752354	-0.670555469307939	0.234790449689079	0.544671297409607
Merged-chr14-20478958-4	chr14	20478852	20479052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110794, intron 1 of 12)	intron (NM_001110794, intron 1 of 12)	1181.0	NM_001110794	11750.0	Mm.280231	NM_009674	ENSMUSG00000021814	Anxa7	AI265384|AI316497|Anx7|synexin	annexin A7	protein-coding	6.73265936963745	7.08334489790234	6.28282358101863	6.45639588408861	6.69978308561003	6.86691900368513	5.90964669151953	6.42940288103104	-0.213095051046518	0.467543942595299	0.747026558181345
Merged-chr5-31698559-4	chr5	31698462	31698662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153196)	promoter-TSS (NM_153196)	512.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	8.14373136047198	8.37481075266812	8.01616848079497	7.78357004911722	8.18359096157023	8.25345126943376	8.03088289913949	7.97640884360346	0.0318897877059272	0.866271751712099	0.949874431032359
Merged-chr10-118879196-4	chr10	118879120	118879320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-10317.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	6.45512408767479	7.08081829416693	7.28296235607596	6.61658995123273	6.55415189478598	6.59800588939971	6.60626811233211	6.25773463411256	-0.549231880785568	0.0337947457054459	0.181271756184471
Merged-chr19-55312011-4	chr19	55311916	55312116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025883, intron 3 of 10)	intron (NM_025883, intron 3 of 10)	4020.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	5.18186359449559	5.66458126497572	5.47252944452192	5.59504728342448	5.61363391799448	5.28996907290271	5.72617906850511	5.96257350967218	0.288484533811584	0.332323934398051	0.643414354436918
Merged-chr4-134468357-4	chr4	134468252	134468452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019641)	promoter-TSS (NM_019641)	32.0	NM_019641	16765.0	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	6.11680300283782	6.59004988370533	5.79019356217585	6.05720692897026	6.73000377164448	6.85897111827664	6.83342817223762	6.59032872731687	0.853718814020134	0.000660728238397182	0.00963515294729174
Merged-chr11-43748034-4	chr11	43747947	43748147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133795)	promoter-TSS (NM_133795)	-74.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	7.91750605904208	8.18710216948117	7.90380354697758	8.2205492645536	8.27788391084026	8.47375602717088	8.44093782110222	8.16899750150302	0.344766974072112	0.0463909083682222	0.221347262819526
Merged-chr19-11037739-2	chr19	11037639	11037839	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	12827.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	3.34392615468092	3.46103854325068	3.50914252630941	3.07452260380906	3.62958956812404	3.12489640588518	3.27272005253795	3.65269179834954	0.323219812244906	0.568099923374798	0.808493140975602
Merged-chr12-110696449-4	chr12	110696339	110696539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010480)	promoter-TSS (NM_010480)	-44.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	8.51922889194322	8.75999976099864	8.11635059766698	8.1247785883926	8.47176718006784	8.88135573729158	8.42744963708967	8.32375052069183	0.170546170914895	0.421863772971438	0.714268351482731
Merged-chr9-86544749-4	chr9	86544650	86544850	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177208, intron 33 of 38)	intron (NM_177208, intron 33 of 38)	27092.0	NM_001163746	109785.0	Mm.390201	NM_028352	ENSMUSG00000056131	Pgm3	2810473H05Rik|Agm1|BB187688|C77933|PAGM|Pgm-3	phosphoglucomutase 3	protein-coding	5.19650418091799	4.5526115775224	5.26391733114715	5.14632432128417	6.09975156135887	6.08253023117176	5.3890409068223	5.26022398574078	1.21670730178231	0.000818591843219434	0.0114540099879135
Merged-chr16-65629389-4	chr16	65629282	65629482	+	973.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66685.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	4.86155219082073	4.4103369622985	4.79444942234633	5.0123631100596	4.6933844439724	4.19073561460979	4.66307356771265	4.56260715180423	-0.530679019709751	0.171634435112836	0.465028642110941
Merged-chr7-49399512-3	chr7	49399407	49399607	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 4 of 37)	intron (NM_175272, intron 4 of 37)	153318.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	4.51677489986937	4.52722556708366	4.44302433522022	4.51447135760334	4.13727688282386	3.869759713331	3.97039656733393	3.92830230610828	-1.2962549608836	0.001710391815285	0.0206871672081853
Merged-chr11-116869416-3	chr11	116869319	116869519	+	884.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 10 of 12)	intron (NM_178620, intron 10 of 12)	15419.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	3.51435149426412	3.76194778806135	3.33728452438776	3.46383332913702	3.49817923861062	3.57332370096115	3.44540911644345	3.71672115543695	0.105113330273965	0.833817655501814	0.936567885449954
Merged-chr13-52236333-4	chr13	52236235	52236435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	139594.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	7.42257233345893	7.23759717646227	7.40472897905301	7.40435065483561	7.2496193479998	7.06584381888144	7.405806187962	7.29941814210179	-0.144685387524045	0.427970887901205	0.719049683227189
Merged-chr2-3349136-4	chr2	3349037	3349237	+	926.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145921, intron 3 of 7)	intron (NM_145921, intron 3 of 7)	12969.0	NM_030063	78245.0	Mm.99733	NM_030063	ENSMUSG00000026644	Acbd7	9230116B18Rik	acyl-Coenzyme A binding domain containing 7	protein-coding	3.86598030907976	3.80607972449631	3.81478439368322	3.69404135401783	4.15337078006918	3.76443689141466	4.12019980803803	3.91396515544602	0.608317079544581	0.165704743019762	0.456574842387784
Merged-chr10-3840097-4	chr10	3840026	3840226	+	911.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159942, intron 2 of 16)	intron (NM_001159942, intron 2 of 16)	-32541.0	NM_001033253	213783.0	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	3.30903293120909	3.21255252601351	3.37440956836877	3.9188183438732	3.74446411297112	3.55178623830537	3.91484582523711	3.70689090341261	0.707990889881954	0.218663835676801	0.525926645929548
Merged-chr1-172633062-4	chr1	172632926	172633126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026725)	promoter-TSS (NM_026725)	-52.0	NM_026725	68440.0	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	8.39005838998042	8.52000009047283	8.48576978212894	8.58660970991489	8.69903381937312	8.80219468773514	8.94630220524687	8.48533248591625	0.304208483768048	0.062605659841071	0.265071550825705
Merged-chr2-131545555-4	chr2	131545432	131545632	+	887.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013460, exon 2 of 2)	3' UTR (NM_013460, exon 2 of 2)	16753.0	NM_013460	11550.0	Mm.389380	NM_013460	ENSMUSG00000027335	Adra1d	Adra-1|Adra1|Adra1a|Gpcr8|Spr8|[a]1d|alpha1D-AR	adrenergic receptor, alpha 1d	protein-coding	4.31377848266276	3.97675067424194	3.89669812419163	3.96236013549014	4.19488724590916	4.17566657306181	3.98531015147522	4.27152160943875	0.31575449672004	0.449905373357153	0.734929420530334
Merged-chr3-67564909-4	chr3	67564832	67565032	+	716.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17836.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	3.30590036866021	3.32043602413771	3.49274358811941	3.66068128185752	3.66716337902384	3.54878106409203	3.95203711277794	3.75219345402191	0.842139301870701	0.101256806852106	0.349261400219328
Merged-chr17-56474564-2	chr17	56474483	56474683	+	870.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 1 of 27)	CpG	1897.0	NM_001252455	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	2.94454197790766	2.79316438378072	2.944907254029	2.81424767166492	2.85374981924553	3.05427145069326	2.99367467980665	3.11583866783815	0.575314297211113	0.328266484758124	0.639717457045817
Merged-chr5-125074698-4	chr5	125074602	125074802	+	900.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 14 of 46)	intron (NM_011424, intron 14 of 46)	71227.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	4.65274135985041	4.76559185233083	4.53009698993589	5.24458848122146	4.52099647349695	4.37078988109491	4.59235468743938	4.61068337191476	-0.696517129972915	0.0731907906315289	0.291188155293812
Merged-chr6-113850023-4	chr6	113849915	113850115	+	930.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009723, intron 3 of 21)	intron (NM_009723, intron 3 of 21)	41524.0	NM_001036684	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	4.73920185716522	4.79115964472262	4.88696192302551	5.05817803648508	4.8980103201759	4.462276565156	4.71788216473197	4.98355514494315	-0.202938522408601	0.561695221586215	0.805092714000909
Merged-chr4-45972256-4	chr4	45972154	45972354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146142)	promoter-TSS (NM_146142)	-43.0	NM_146142	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	8.43673795289605	8.43475339170335	8.30839755625817	8.44920450104406	8.56777609476803	8.60023966741782	8.64904023222327	8.43775401416103	0.195922455019652	0.186218098307437	0.484113766444254
Merged-chr2-84504480-4	chr2	84504391	84504591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046046, intron 1 of 2)	MTEa|LTR|ERVL-MaLR	2382.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	5.38957696385519	5.23162906851933	5.24581303556674	5.58475484200082	6.51632898862216	6.38040870830761	6.53273557931	6.3547315709043	1.66140188552231	2.09132926795145e-10	1.52675616372838e-08
Merged-chr5-122051673-4	chr5	122051588	122051788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1837.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	5.84321951089786	5.81573111338566	6.25294456673803	6.06508412165583	6.00295128738913	5.81308801959937	5.76567060831387	6.04045163216499	-0.146646646490286	0.565063849625682	0.807206529642693
Merged-chr9-49051604-4	chr9	49051484	49051684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3997.0	NM_012039	26951.0	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	6.300903965519	6.00134741179799	5.54965345563938	6.15811191036703	5.3889653326231	5.57474026984731	5.83090678405059	5.71067999883772	-0.663859008770549	0.0213264155041158	0.133608364964947
Merged-chr7-81548956-3	chr7	81548830	81549030	+	793.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172904, exon 7 of 13)	exon (NM_172904, exon 7 of 13)	18051.0	NM_172904	244091.0	Mm.38773	NM_172904	ENSMUSG00000038663	Fsd2	9830160G03Rik|Spryd1	fibronectin type III and SPRY domain containing 2	protein-coding	3.22398203744032	2.87108158100371	3.34522862235575	2.83188576725686	3.50990944344298	3.62782245178643	3.3874985299193	3.65001037842564	1.74357671149294	0.00242063611243619	0.0270739248659798
Merged-chr11-106819671-4	chr11	106819572	106819772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025481)	TTS (NM_025481)	30420.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	7.0922373785399	7.17943422778291	7.27115204687012	7.42894229793115	6.35286363467457	6.48892127546547	6.31685804351686	6.49715653608541	-1.19703800774367	5.03093325526389e-09	2.82410724113903e-07
Merged-chr10-86929153-4	chr10	86929075	86929275	+	947.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 25 of 68)	intron (NM_138673, intron 25 of 68)	78767.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	4.9638263023935	4.52960548118807	4.81827222111087	5.92907170125057	4.45829883191407	4.83501461525399	5.21635045520837	4.41129186484989	-0.807139870490635	0.0883329902573194	0.324256054800045
Merged-chr4-5644122-4	chr4	5644021	5644221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173426)	promoter-TSS (NM_173426)	31.0	NM_173426	242297.0	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	6.51890638079399	6.03453073082349	6.58102944336031	6.35484986373867	6.14247719769318	6.11274935852628	6.47103920074541	6.33065960940485	-0.169755967548274	0.486599666268305	0.760287945502496
Merged-chr16-59491829-1	chr16	59491729	59491929	+	677.0	f0_balb.idr	exon (NM_025910, exon 10 of 10)	exon (NM_025910, exon 10 of 10)	20054.0	NM_025910	67014.0	Mm.289150	NM_025910	ENSMUSG00000022724	Riox2	1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204|Mina	ribosomal oxygenase 2	protein-coding	2.9614017575221	3.03458135215264	2.96182181791454	3.46670067663748	2.41753460980912	2.59115055453548	2.55818854175719	2.4846600104767	-4.03639389351462	4.69036055946865e-05	0.00106867853477087
Merged-chr8-25018022-4	chr8	25017905	25018105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027194, intron 1 of 3)	intron (NM_027194, intron 1 of 3)	794.0	NM_027194	69742.0	Mm.28626	NM_027194	ENSMUSG00000031556	Tm2d2	2410018G23Rik|Blp1	TM2 domain containing 2	protein-coding	6.04686121431401	6.40648181646994	6.11180520940024	6.21413043170404	6.26120926798767	6.17973172991454	6.23610690042817	5.99936613429517	-0.045748081409603	0.845112131999636	0.941380852012553
Merged-chr7-141550588-4	chr7	141550474	141550674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10717.0	NM_001142681	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	6.15215600150351	6.45254431775047	6.57267872797815	6.06300046689336	5.67073544009808	5.82026406333343	5.72080064154204	5.31302505591417	-1.07075843105229	0.000100952097044581	0.00204661615367025
Merged-chr15-60825002-4	chr15	60824926	60825126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162926)	promoter-TSS (NM_001162926)	54.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	6.607029958119	6.57387290077908	6.45004117387613	6.39619016869389	6.15724829830128	6.50230703621588	6.31213382797454	6.18431728900427	-0.319855835924799	0.151701369348713	0.435412422442889
Merged-chr13-52189720-4	chr13	52189598	52189798	+	993.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	92957.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	5.03131729904011	4.80632909812373	4.99793256903452	5.01495987101239	4.892031770613	4.90767093577769	5.22258046842039	5.3538489327979	0.263721373063872	0.414604913981205	0.70912924922228
Merged-chr15-66930521-4	chr15	66930416	66930616	+	742.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008681, exon 16 of 16)	3' UTR (NM_008681, exon 16 of 16)	39123.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	3.53543571342628	3.52079563950535	3.70445672288544	4.0559019226248	3.83330411996884	3.5897593652362	4.00950276943474	3.5926406378074	0.0911529832907999	0.859323230954718	0.946750584405874
Merged-chr16-65371136-4	chr16	65371049	65371249	+	852.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149480.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	3.97773193500316	4.07004341736167	3.75837839081909	4.00560325286818	3.9861326744896	4.29207472276293	4.14773018989692	4.24828732839963	0.531265108800279	0.206619018477042	0.510630050659024
Merged-chr10-128272071-2	chr10	128271913	128272113	+	912.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019963, intron 1 of 23)	intron (NM_019963, intron 1 of 23)	1515.0	NM_019963	20847.0	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	3.03264894853484	3.42464109214112	3.16214028244985	2.95852137383882	3.3099041063167	3.50312072460238	3.2101509176163	3.16055993294988	0.559841615614524	0.324001820663601	0.635512843920044
Merged-chr13-64281158-4	chr13	64280992	64281192	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-6104.0	NM_172587	218294.0	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	4.79352712970553	4.81968231613886	4.51577039670917	4.78657919964647	4.7432820109296	4.45463894131566	4.90557266862749	4.67923327609408	-0.0635705945010987	0.855818191532011	0.94577284315945
Merged-chr6-146162794-4	chr6	146162695	146162895	+	989.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 52 of 56)	intron (NM_019923, intron 52 of 56)	228673.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	6.3265563030615	5.95723884237927	6.2918106266142	6.77333896819389	6.16950407048069	5.56035771264592	6.31263154764433	6.17318479697019	-0.448644723873321	0.128162273378454	0.398412999816789
Merged-chr2-150840320-4	chr2	150840218	150840418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 6 of 12)	intron (NR_151505, intron 6 of 12)	2252.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	8.28355477954264	8.23693924929491	8.59174387163573	8.40447330078758	8.05604043708994	7.85293116270727	8.25713404343351	8.31267368312215	-0.32319459247719	0.0710465424332389	0.28590128018179
Merged-chr18-46198963-4	chr18	46198881	46199081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170855)	promoter-TSS (NM_001170855)	-163.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	7.05752791315986	6.94249481881451	7.63949214004758	7.29300132699297	6.92681163660002	6.82530514732653	6.85539052719639	7.04160474101417	-0.47388857984062	0.0325201597261362	0.176590818518969
Merged-chr7-143757120-4	chr7	143757033	143757233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9860.0	NM_203492	381974.0	Mm.297839	NM_203492	ENSMUSG00000050276	Mrgprg	Gm1098|Mrgg	MAS-related GPR, member G	protein-coding	5.19403020945662	5.7655853670205	5.85618882020591	5.53471819655566	5.52387979765644	5.41009304822364	5.56652651695965	5.87323646095789	-0.00927384181859736	0.975075483947946	0.991106419589236
Merged-chr3-32400111-4	chr3	32399974	32400174	+	925.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34409.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	4.12839213261447	4.77788525561754	4.3244498662602	4.59607744965222	4.5567648136762	4.3552351737257	4.47593554852636	4.45273477407438	-0.0605807499140364	0.878323789342625	0.954491045689533
Merged-chr9-59728102-4	chr9	59727977	59728177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20313.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	6.07468527696117	6.31212345238583	6.62712730964305	6.49407644761084	5.86847452713824	5.620049105519	5.65719499077488	6.02873429999722	-0.915719592603537	0.000421858687905875	0.00671455267138915
Merged-chr16-91002369-4	chr16	91002251	91002451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045515, intron 2 of 32)	intron (NM_001045515, intron 2 of 32)	8744.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	6.22872977847785	5.88268840833232	6.00038882116928	5.95913038529884	5.60562676874206	5.63905649980119	5.74148618751579	6.05748779256533	-0.402044059722143	0.12416585691874	0.390992812317244
Merged-chr11-32912013-3	chr11	32911905	32912105	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-87411.0	NM_027050	69351.0	Mm.65488	NM_027050	ENSMUSG00000020270	Smim23	1700008A04Rik	small integral membrane protein 23	protein-coding	6.20244281594076	5.30831823785602	5.98735441649162	6.28708683787084	3.59785818850912	3.89191828580455	3.81052348671974	3.82395516755854	-6.80533762533135	3.87284701524249e-14	5.4695511448005e-12
Merged-chr9-8017436-3	chr9	8017332	8017532	+	924.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12836.0	NM_001171147	22601.0	Mm.221992	NM_009534	ENSMUSG00000053110	Yap1	AI325207|Yap|Yap65|Yki|Yorkie	yes-associated protein 1	protein-coding	4.41001463195211	5.00750322332478	4.49753635232386	4.96716802434265	4.4545707605271	4.29229037731972	4.25047457670523	4.36231726178995	-0.932889797648834	0.018842689540282	0.122900917696206
Merged-chr1-131084427-4	chr1	131084324	131084524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	13419.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	7.07337621377409	7.53668547984538	6.73512208366664	6.8365482279923	7.04481629249539	7.21522195760928	7.11927561537883	6.79113885449719	-0.0437499574521545	0.856889446019435	0.946159157665131
Merged-chr5-64410890-4	chr5	64410748	64410948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57094.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	5.84859296124454	5.61213998060708	5.73743736926407	5.83732919833644	5.07778781705403	5.53416729544718	5.4784799423321	5.47375722347584	-0.647066933630593	0.0213741210315856	0.133825289904287
Merged-chr7-118849147-3	chr7	118849023	118849223	+	785.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168219, intron 2 of 3)	intron (NM_001168219, intron 2 of 3)	6490.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	3.65066619534415	3.50486957137848	3.44807106837181	3.47269993094724	3.59691246110003	3.31771619196186	3.37926144845756	3.20534639625858	-0.428271831638064	0.41445320482986	0.709044594374843
Merged-chr12-86147462-3	chr12	86147360	86147560	+	947.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029601, intron 4 of 7)	L2b|LINE|L2	-21881.0	NR_046081	328136.0	Mm.312050	NR_046081	ENSMUSG00000097543	Gm805	-	predicted gene 805	ncRNA	3.15810857323033	3.61164947702528	3.77145250408536	3.56665598145408	3.11554242519652	3.58941978174952	3.56538033183798	3.4710407230197	-0.337419733057904	0.546421965809138	0.796367024392978
Merged-chr18-68154313-4	chr18	68154201	68154401	+	873.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-73645.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	4.50897001946017	4.24236659940681	3.88699101458302	4.31307859831169	3.99587011324269	4.22279649521538	4.30051700509734	3.88490940146379	-0.381729496927316	0.380500599249572	0.682947579342494
Merged-chr18-12760912-4	chr18	12760805	12761005	+	864.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252490, intron 10 of 13)	intron (NM_001252490, intron 10 of 13)	19550.0	NM_027687	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	4.07783726413072	3.59473873725493	3.83656727926103	3.66162969232269	4.30787812842692	3.7864001380846	4.05999583852308	4.07589194450508	0.780437642463906	0.0892239310320004	0.325953099308497
Merged-chr16-17205182-4	chr16	17205087	17205287	+	861.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2948.0	NM_001033338	239731.0	Mm.86671	NM_001033338	ENSMUSG00000071636	Rimbp3	Gm1759|Gm603|RIM-BP3|mKIAA1666	RIMS binding protein 3	protein-coding	4.26380255434274	4.04412242300166	3.85078106261901	3.79732101563755	4.87465193318818	4.09279995133342	4.24499489150918	4.53938250711886	1.20262635412346	0.00655435956913307	0.0579501935349173
Merged-chr10-59879042-4	chr10	59878925	59879125	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019965)	promoter-TSS (NM_019965)	-566.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	4.92061225008182	4.63814055886052	4.74004431333319	4.89954303632398	4.71983053305922	4.70693220956606	4.96287014795653	4.9514193913521	0.0545528115193538	0.870579254016233	0.951405771688593
Merged-chr4-145215525-4	chr4	145215427	145215627	+	954.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011610, exon 10 of 10)	3' UTR (NM_011610, exon 10 of 10)	-20522.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	4.73931643643809	4.73827317799306	5.84733524156988	5.71594495831624	5.12307114319732	5.38889150788189	5.55301709772384	5.52733254075966	0.0630062803443309	0.875674902383662	0.953300764369434
Merged-chr10-4111929-3	chr10	4111845	4112045	+	989.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 26 of 27)	intron (NM_001170785, intron 26 of 27)	101175.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	4.30042154157656	4.82105917275883	4.87564998338806	4.55868602187622	3.38156090296753	3.78165283633304	3.64142137588236	3.6528369215311	-3.07884395568893	3.92705997073176e-09	2.25422743271545e-07
Merged-chr14-45676823-4	chr14	45676724	45676924	+	846.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-18681.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	4.11082853791831	4.30412302846656	4.94044234636978	4.28676920647986	4.27295772411934	4.01545589214518	4.19087895554376	4.05725895027139	-0.730864236676198	0.100117963297973	0.347200804364745
Merged-chr18-60596181-4	chr18	60596101	60596301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177340, exon 3 of 3)	exon (NM_177340, exon 3 of 3)	-4485.0	NM_133363	170947.0	Mm.159257	NM_133363	ENSMUSG00000049173	Myoz3	4833419K08Rik|Fatz-3	myozenin 3	protein-coding	7.04460075231359	6.82388380834428	6.83199384331851	6.87155863162678	6.72971172409058	6.73387100944526	6.93952265097767	6.65067565646763	-0.178360580462613	0.371390101118816	0.675446164536008
Merged-chr7-24316737-4	chr7	24316627	24316827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199321)	promoter-TSS (NM_001199321)	-61.0	NM_001199321	22756.0	Mm.295762	NM_009568	ENSMUSG00000074282	Zfp94	-	zinc finger protein 94	protein-coding	7.38757985052023	7.23805534393037	7.23934497410668	7.66165825677213	7.5047327298159	7.49371021513378	7.71531222514988	7.56164932774394	0.216719118148812	0.262263946911802	0.574172499368134
Merged-chr9-106319309-3	chr9	106319211	106319411	+	710.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	38250.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	3.25037993982558	2.96519314522403	3.3119288323377	2.94500060057298	3.55669356540518	3.36637915119549	3.61191139663486	3.7164157719593	1.64124215641593	0.00246679374765079	0.027478429324213
Merged-chr1-59237813-3	chr1	59237706	59237906	+	944.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028717)	promoter-TSS (NM_028717)	-575.0	NM_028717	74018.0	Mm.272078	NM_028717	ENSMUSG00000026024	Als2	3222402C23Rik|9430073A21Rik|Als2cr6|Alsin|mKIAA1563	alsin Rho guanine nucleotide exchange factor	protein-coding	3.50109573605776	3.43787678597338	3.67142230132539	3.64229698078176	3.7546000480207	3.89325965919814	3.8948589105451	3.66935608621389	0.704022117896605	0.132346520830323	0.405086777303013
Merged-chr6-129402637-4	chr6	129402542	129402742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019985, intron 4 of 5)	intron (NM_019985, intron 4 of 5)	5345.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	5.40776643162449	5.32894592382759	5.58928425688971	6.20640593685203	5.92017514365844	5.70982669044368	6.09811872757595	5.90607750824355	0.333390356615981	0.299787183541021	0.612033613574254
Merged-chr17-37286894-4	chr17	37286807	37287007	+	910.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-6489.0	NM_146515	258508.0	Mm.377544	NM_146515	ENSMUSG00000061972	Olfr99	MOR156-1	olfactory receptor 99	protein-coding	4.46985720630775	4.67572342669907	4.70067067984104	4.36695658080748	5.38220264473593	5.17583998581231	5.51006159034837	4.92922822367998	1.44108685749637	1.89015014896614e-05	0.000484337312891277
Merged-chr1-74134084-4	chr1	74133990	74134190	+	703.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034060, intron 8 of 11)	intron (NM_001034060, intron 8 of 11)	8549.0	NM_001034060	435626.0	Mm.240447	NM_001034060	ENSMUSG00000061815	Rufy4	F930048N03Rik	RUN and FYVE domain containing 4	protein-coding	4.1014712511887	4.24583956285863	4.10207233341695	4.28993965877145	3.97341981857629	4.12481895836455	4.13165548162063	4.43721700312328	-0.0612616871819856	0.881908436017237	0.955512673028357
Merged-chr17-44027465-3	chr17	44027376	44027576	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357742, intron 4 of 4)	intron (NM_001357742, intron 4 of 4)	-51326.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	5.45909836959701	5.23980719748007	5.17804445410489	5.47750891786968	3.28178640325473	3.74691826525167	3.59655441456504	3.6860524246918	-6.6682407280476	5.863507310304e-12	5.52792830251825e-10
Merged-chr4-154943907-1	chr4	154943807	154944007	+	546.0	f0_c57.idr	Intergenic	Intergenic	-15830.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	3.82358047333656	4.58486379728831	3.93476687859459	3.77968158869048	4.36306011289382	4.16186860102515	4.01959670992177	3.93251844203362	0.153669016061962	0.750265357064455	0.901684021384034
Merged-chr8-11466283-3	chr8	11466185	11466385	+	947.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-11644.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	3.45468596424728	3.66595753216705	4.07103736432537	3.68442006004301	3.48911362249863	3.63122880467752	3.38140379487899	3.56944547139032	-0.68534284632404	0.179270973260215	0.475558645945455
Merged-chr3-90383839-4	chr3	90383738	90383938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6100.0	NM_001316688	26568.0	Mm.45519	NM_011988	ENSMUSG00000027932	Slc27a3	Acsvl3|FATP-3|FATP3|Vlcs-3	solute carrier family 27 (fatty acid transporter), member 3	protein-coding	6.13187300028165	6.67053600601586	6.43735308781578	6.85195990731286	6.15507896493023	5.8858007271115	6.3702473825551	6.3810192818106	-0.524044708811094	0.0464397782860832	0.221399406265128
Merged-chr13-33951513-3	chr13	33951421	33951621	+	759.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040707, intron 1 of 4)	intron (NR_040707, intron 1 of 4)	-13138.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	3.16597744605969	3.16496998928259	3.66651690993302	3.43862310059907	3.16146430996759	3.21466198656895	2.88865724665191	3.10222349339579	-1.06246494991108	0.0761575796025469	0.298096281646671
Merged-chr1-74763255-4	chr1	74763176	74763376	+	796.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8616.0	NM_009526	22420.0	Mm.268282	NM_009526	ENSMUSG00000033227	Wnt6	AA409270|Wnt-6	wingless-type MMTV integration site family, member 6	protein-coding	3.95480211336552	4.1575993218212	3.63506595531226	3.66131748719113	3.71157320654312	3.92605355915622	4.07112373232103	3.90485370553411	0.114005716594909	0.808294542085247	0.926004687049714
Merged-chr4-149729005-4	chr4	149728915	149729115	+	905.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284270, intron 4 of 10)	intron (NM_001284270, intron 4 of 10)	8755.0	NM_001284273	230917.0	Mm.266704	NM_177672	ENSMUSG00000044700	Tmem201	AV028368|D4Ertd429e|Net5|Samp1	transmembrane protein 201	protein-coding	4.62507928266549	4.75606027919312	4.46342142321813	4.88968171186005	4.27599896553607	4.63724517512045	4.48545553678561	4.22436363354211	-0.669718667828466	0.0778719389698172	0.301733627867862
Merged-chr9-58802496-4	chr9	58802374	58802574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21038.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	5.49018421594468	5.60202991208445	5.34858466415371	5.24247904281718	5.49449032851668	5.33072366899835	5.49007536910002	5.34489265139203	0.0091645217230324	0.9742560653667	0.990857401763433
Merged-chr1-171233130-4	chr1	171233023	171233223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010185, intron 1 of 4)	MIR|SINE|MIR	1226.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	5.98557156853053	6.26774283214595	6.05018107805274	5.45337586818447	6.19699843286528	6.14013019956576	5.86649209849256	5.74421759904559	0.0724846299783623	0.805860597775771	0.925317663285668
Merged-chr7-102313366-3	chr7	102313276	102313476	+	629.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 1 of 11)	intron (NM_009287, intron 1 of 11)	45552.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	3.49610166375044	3.56545468125854	3.43612234714451	3.39423643557602	3.26251407728739	3.93278415977912	3.96425548113753	3.71178312409641	0.839215056746616	0.107606461743445	0.361732329292372
Merged-chr11-80209592-4	chr11	80209490	80209690	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163355, intron 1 of 19)	intron (NM_001163355, intron 1 of 19)	535.0	NM_021536	59040.0	Mm.489674	NM_021536	ENSMUSG00000017686	Rhot1	2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1	ras homolog family member T1	protein-coding	4.53740715584448	4.54765501219774	4.41061862718035	4.35710457064625	4.63172210201217	4.54033402489127	4.55667483678296	4.65096073204614	0.316262003310983	0.370265070298038	0.674422883431703
Merged-chr13-74808708-4	chr13	74808618	74808818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009817)	promoter-TSS (NM_009817)	42.0	NM_001301153	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	5.53859806651054	5.11308387189735	6.09946071049966	5.80380115152872	5.4794470045688	5.65901905395869	5.69390700670832	5.83533135454088	-0.0346484226697961	0.912962392342268	0.96737778834115
Merged-chr15-25285628-4	chr15	25285517	25285717	+	928.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	128147.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	4.05149842785066	4.36275868279225	4.30792593766078	4.70395525909836	4.92294204210463	4.17772905046527	4.50068655394072	4.43763245763418	0.349911874350798	0.423736055752767	0.715599997922231
Merged-chr11-5742290-2	chr11	5742190	5742390	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	B2_Mm2|SINE|B2	-1114.0	NM_178623	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	3.25288291578052	3.27498373061945	3.36310471991954	2.64288697351847	3.44726869765262	2.96744727211789	3.05877256988253	3.46199652607905	0.317923737155085	0.631477005832027	0.843426814495944
Merged-chr9-87021953-4	chr9	87021861	87022061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024195)	promoter-TSS (NM_024195)	-68.0	NM_024195	266690.0	Mm.30166	NM_024195	ENSMUSG00000032872	Cyb5r4	2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r	cytochrome b5 reductase 4	protein-coding	8.17154277534802	7.91587347114008	8.11081879904963	8.2445548754979	8.24870667100861	8.16831052338407	8.33462268454118	8.12437447923003	0.130462247862375	0.425655932871358	0.717115365893346
Merged-chr9-21917735-2	chr9	21917635	21917835	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031874, intron 1 of 4)	intron (NM_031874, intron 1 of 4)	448.0	NM_031874	19340.0	Mm.260157	NM_031874	ENSMUSG00000019066	Rab3d	C130057E11Rik	RAB3D, member RAS oncogene family	protein-coding	3.35057469230982	3.12435153921691	3.52536674289466	3.09557267795476	3.85271115143363	3.69806040216977	3.39866976578689	3.7698239893363	1.41103722221554	0.00731565531736506	0.0628586467690401
Merged-chr9-20892165-4	chr9	20892081	20892281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145610)	TTS (NM_145610)	4006.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	6.67550121150425	7.0188499614059	7.0639002776471	6.70397097402405	7.57434673416761	7.30158508336162	7.52862177377331	7.56075756360689	0.857307514513941	1.47172456458843e-05	0.000389427073542155
Merged-chr17-44345560-3	chr17	44345458	44345658	+	761.116699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	156986.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	3.52473739996782	3.75825173439614	3.97436002940511	3.68629518654965	3.26283780593825	3.11646621247483	3.14494211725583	3.35083096449107	-1.8591588727479	0.00101269837354374	0.0135827505555763
Merged-chr4-22357612-4	chr4	22357511	22357711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104378)	promoter-TSS (NR_104378)	68.0	NR_104380	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	7.83672605926883	7.59928866095647	8.34034392985619	8.138571798905	7.58423930239755	7.56042012421163	7.90086753664956	7.85507141409286	-0.364393293549302	0.0880857165444816	0.323779847114309
Merged-chr17-35736620-3	chr17	35736490	35736690	+	989.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-31991.0	NM_007584	12305.0	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	2.85471810743469	2.77816597241155	2.85499854422003	2.32815647805228	4.15318412838843	3.83473290483726	3.94868001814449	3.96711201991813	7.86983088959729	5.98837035000558e-16	1.13363354559321e-13
Merged-chr9-107963864-4	chr9	107963777	107963977	+	796.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011634, intron 10 of 14)	B1_Mur4|SINE|Alu	-11690.0	NM_023738	74153.0	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	3.61102264933761	4.25731962511202	3.61146051527453	3.85601952394219	3.93754162988578	4.25563029590313	4.23132149601958	3.730630957679	0.505961547158181	0.305654110144162	0.618037438382799
Merged-chr5-43865969-4	chr5	43865850	43866050	+	929.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2859.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	4.06950830784297	4.08151929838053	4.21368912751902	4.00582604727347	4.21270883984451	4.08879341798883	4.40119242405807	4.56385817083494	0.597865893477524	0.13712174613331	0.411824241716235
Merged-chr1-177282179-4	chr1	177282088	177282288	+	880.845825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33421.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	4.40033547552084	4.61213074248778	4.82895032037681	4.88278654797375	4.5684965219028	4.57681304220004	4.55267687742931	4.30268707628693	-0.438920867894983	0.237996848318792	0.548302111021463
Merged-chr10-43479164-4	chr10	43479093	43479293	+	996.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199028)	promoter-TSS (NM_199028)	53.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	5.27656485842195	5.11761828282375	5.21526539791332	5.07718057012751	5.60565282797476	5.29169270996776	5.36634395883069	5.17944226051728	0.397621888649889	0.178106539204429	0.473852334381104
Merged-chr1-155093432-5	chr1	155093418	155093618	+	826.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6118.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	3.02774981430668	3.23542696798627	2.76850004849753	2.74898926675563	2.91008489398027	3.01359754152908	3.01662587311036	3.02653687392772	0.145439065640018	0.813901559742507	0.928109035433692
Merged-chr15-82244527-4	chr15	82244427	82244627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080158)	promoter-TSS (NM_001080158)	-191.0	NM_001080158	66570.0	Mm.23596	NM_025639	ENSMUSG00000068101	Cenpm	2610019I03Rik|AI853711|Pane1	centromere protein M	protein-coding	6.9247419486539	7.11569302514625	7.01400326714277	6.70539930529977	6.67767430145049	7.10241862263353	6.79656717050026	7.00905275205088	-0.0561780870646355	0.794649889768152	0.920584812443453
Merged-chr11-54492754-4	chr11	54492656	54492856	+	998.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 9 of 17)	intron (NM_173753, intron 9 of 17)	-30089.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	5.77996139919334	5.70391963468985	5.55932914250537	5.74117867337514	5.42120156221886	5.25598023583179	5.65842248602186	5.4429603218455	-0.42525666937701	0.117023138373827	0.378500655129107
Merged-chr15-56695617-3	chr15	56695492	56695692	+	754.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1046.0	NM_008216	15117.0	Mm.5148	NM_008216	ENSMUSG00000022367	Has2	-	hyaluronan synthase 2	protein-coding	3.79722554238754	3.88450955461144	3.84565294315929	3.70925697002687	3.77695375257897	3.7598579206049	3.39064724015007	3.58422411095856	-0.499193148156686	0.299019369046832	0.611311162969898
Merged-chr12-98406774-2	chr12	98406674	98406874	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117070.0	NR_136759	105245437.0	Mm.446375	NR_136759	ENSMUSG00000113613	Gm40893	-	predicted gene, 40893	ncRNA	2.99659413786186	2.43905413084848	2.56822780550427	2.66054838615259	2.68893484621798	2.87779862496917	2.75939429647261	2.76812281869122	0.441325546765945	0.514980199892973	0.777338373814592
Merged-chr10-98831664-4	chr10	98831560	98831760	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82982.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	4.65905302912324	4.89769302698239	5.02722969233479	5.36912763843411	5.2937636309063	5.30396030966626	5.28640860158576	5.41799142320981	0.524877717175034	0.118820240876668	0.3813389862111
Merged-chr6-83101543-4	chr6	83101470	83101670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081266)	promoter-TSS (NM_001081266)	54.0	NM_001081266	243510.0	Mm.436553	NM_001081266	ENSMUSG00000107499	Ccdc142	A230058J24Rik	coiled-coil domain containing 142	protein-coding	5.90806036232586	5.40065740905719	5.63837683010847	5.77899928061918	5.74493420221386	6.10515807137722	5.85666982571599	6.14573014051731	0.433808046642401	0.109426818449587	0.365262551996626
Merged-chr8-35588457-3	chr8	35588286	35588486	+	868.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081279, exon 1 of 3)	exon (NM_001081279, exon 1 of 3)	588.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	4.21745672878949	4.03998115191973	4.72491541218821	3.83550430565291	3.88882746619646	4.09987413125119	3.84685977691972	4.45776134960071	-0.367961492358301	0.451955707305724	0.736359368010693
Merged-chr14-84454274-4	chr14	84454165	84454365	+	911.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013753, intron 1 of 3)	intron (NM_001013753, intron 1 of 3)	10702.0	NM_001013753	219228.0	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding	5.13489102109673	5.4356538488462	5.62907315715283	5.64867259265903	4.47009960585741	4.72877217334174	4.66218920202277	4.58800084276597	-1.7453939583642	2.26031242081417e-07	8.99195981308693e-06
Merged-chr8-69903270-4	chr8	69903097	69903297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023312)	promoter-TSS (NM_023312)	-639.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	7.44562172352886	7.70144321665489	7.21989063778818	7.30826728950176	7.76030572972839	8.18143466830619	7.61002002799263	7.77024492783481	0.54585476001302	0.00813853056884888	0.067968141189733
Merged-chr12-40565015-4	chr12	40564919	40565119	+	858.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	118966.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.16601080132021	4.55381830871694	4.30554044286128	3.8596518494412	4.40401968239487	4.38920000863768	4.55840825340938	4.00902362514949	0.28905242463118	0.508448079328961	0.773535236506654
Merged-chr6-72161905-4	chr6	72161773	72161973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-38676.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	6.73556575787403	6.86634925822878	6.84717486250195	6.75682909940273	6.48330781673926	6.58672206697905	6.71675308544769	6.62671389316439	-0.28572428557519	0.154924320462427	0.440372117974327
Merged-chr17-50111245-4	chr17	50111142	50111342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	79255.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	6.14681931075804	6.12245937947504	6.0514243206256	6.33167278860297	5.45146043501649	5.52771696016957	5.84959328372036	5.40929743405006	-0.990491566250883	0.000153620264410119	0.00290734825856099
Merged-chr14-79562730-8	chr14	79562622	79562822	+	920.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286412, intron 3 of 7)	intron (NM_001286412, intron 3 of 7)	-24938.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	3.50621979083027	3.69070783660748	3.79179305528106	3.61999732483769	3.71020084945807	3.96366820273783	3.82563251765658	4.14441195049498	0.762853236403104	0.0983840870912746	0.343964551347694
Merged-chr3-99253981-4	chr3	99253874	99254074	+	734.137512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009323, exon 1 of 8)	exon (NM_009323, exon 1 of 8)	214.0	NM_009323	21384.0	Mm.88761	NM_009323	ENSMUSG00000027868	Tbx15	Tbx14|Tbx8|de	T-box 15	protein-coding	3.79356626985083	3.80425866659439	4.18793814323833	4.15345704189897	3.91366882796727	3.97216441964474	3.93960940791643	4.45086088806679	0.213586207309125	0.641709030247685	0.848854850593973
Merged-chr2-58923291-4	chr2	58923186	58923386	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	RMER19C|LTR|ERVK	168102.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	5.79624810738166	5.23900068078534	5.41623740826125	4.97922417594058	5.52599179071354	5.05157046219136	4.92779874611583	5.56914906634565	-0.132426510097076	0.710368526294635	0.884071480587363
Merged-chr10-111473174-4	chr10	111473085	111473285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015781)	promoter-TSS (NM_015781)	-42.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	8.42438536011706	8.56323412068297	8.41535417297904	8.47763970831355	8.44970515987167	8.4377963435153	8.58636283002358	8.26059519850852	-0.0422058935191813	0.784486286315196	0.916076100794651
Merged-chr2-59129212-4	chr2	59129108	59129308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	L1MA6|LINE|L1	31475.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	6.58641744233738	6.74146350932873	7.00111152913187	6.99829193713786	6.89293228814901	7.00878972736091	6.92890894133961	6.84125558942525	0.0897453836914956	0.663500418573787	0.860575753363866
Merged-chr2-132599295-4	chr2	132599166	132599366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 1 of 3)	intron (NR_033469, intron 1 of 3)	1070.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	8.13978793691024	8.08483708458389	8.31810879542344	7.9481549004517	7.95338384934135	8.24250178977496	8.12078489560458	8.03330011830047	-0.0443113697043279	0.795324101128602	0.920823289538254
Merged-chr11-96967059-4	chr11	96966978	96967178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	10610.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	6.37042010281301	6.58215324843777	6.07514324277938	6.08460954424802	6.39429453004562	6.61509955119726	6.39037687019381	6.04837113579664	0.129907185297081	0.608026581796797	0.83032239482552
Merged-chr5-76175234-4	chr5	76175135	76175335	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB3_1-I_MM-int|LTR|ERVK	-8645.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	5.31831962552826	5.73455465803504	6.28385404634143	5.86157347242387	5.22588999908728	4.66571849719179	5.12598412047331	5.18311443092349	-1.3492504066783	0.000107653663459258	0.00215910963972006
Merged-chr15-8995667-4	chr15	8995570	8995770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198024, intron 1 of 13)	intron (NM_198024, intron 1 of 13)	27721.0	NM_198024	223332.0	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	5.53256946789724	5.41872049718751	5.36048258899574	5.3643678129809	5.7905919071905	5.4416899556216	5.65681131109282	5.52964377302477	0.356102610089509	0.18987276916494	0.48897703139117
Merged-chr7-73537877-4	chr7	73537780	73537980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	CpG	3866.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	9.14603063217759	9.2950041787835	9.35847305078048	8.88948009376656	9.2769527076364	9.5008285348491	9.16728851315789	9.20187449314127	0.138523238353957	0.411187024906051	0.706595235406867
Merged-chr10-9575827-3	chr10	9575731	9575931	+	760.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99377.0	NM_177271	320825.0	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	3.79146655467557	3.72778592103108	4.01508106439218	3.71426922809056	3.66610002537317	3.5098954224764	3.62235497990362	3.63447343731068	-0.609062258889818	0.199193447815422	0.50101507397321
Merged-chr8-92849866-4	chr8	92849769	92849969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008610, intron 11 of 12)	intron (NM_008610, intron 11 of 12)	-5464.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	5.89391213675099	5.20532425608816	5.49075415210014	5.60522748180167	6.43905622420914	6.49574781963082	5.90974517816039	6.16010942236333	1.11501826489585	8.69287039693743e-05	0.00180446142310764
Merged-chr3-65549914-4	chr3	65549808	65550008	+	896.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178892, intron 4 of 5)	intron (NM_178892, intron 4 of 5)	-20494.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	4.65139473932537	4.34113326926499	4.79619377432418	4.92036043217926	4.29851521390308	4.53048417934731	4.42580132579621	4.75848881537361	-0.434351034591743	0.260913516806906	0.572842788797001
Merged-chr11-8594778-4	chr11	8594685	8594885	+	975.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	URR1A|DNA|hAT-Charlie	69750.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.23226125000253	4.87717994575856	5.31944734796252	5.01295942067887	5.26070286883558	5.31370379716833	4.75001471316693	5.13697898188294	0.0462176633867966	0.888277092525667	0.958115954740013
Merged-chr19-4928335-4	chr19	4928238	4928438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133803)	promoter-TSS (NM_133803)	-51.0	NM_133803	75221.0	Mm.234769	NM_133803	ENSMUSG00000063904	Dpp3	4930533O14Rik|C86324|DPP III	dipeptidylpeptidase 3	protein-coding	6.67223294038447	7.01657502586296	6.54135936821639	6.55907478346167	7.31113807896934	6.81921954828062	7.07073018061183	6.71478890684241	0.421470296923389	0.0736200238796729	0.292332258547357
Merged-chr15-58261784-4	chr15	58261667	58261867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4A|LINE|L1	-46875.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	8.02163639796271	7.67934282346387	7.88206039162963	7.7927442588391	7.8402545674755	7.6978245810954	7.56651398502724	7.60720842159939	-0.207221879779374	0.239955423003438	0.550410462246196
Merged-chr17-34635867-4	chr17	34635757	34635957	+	946.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6171.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	4.76336707760014	4.92356707991989	4.26592500538319	4.16269703746268	4.67046121641687	4.89985165106193	4.3440193489518	4.21196026918095	-0.00839048284627778	0.984742077652627	0.994414454407789
Merged-chr7-3962194-4	chr7	3962088	3962288	+	895.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46687.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	4.92867036468943	4.29652469431602	4.56770910283856	4.81092329965435	5.04047276123315	4.61291862862624	4.62708079279581	4.337073250613	0.0328769734721097	0.934759376862233	0.97635719558922
Merged-chr3-149098867-3	chr3	149098781	149098981	+	732.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144246.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.56169169814713	4.19037876777237	4.01492763445238	4.54967546434875	3.95688885250931	3.96971195445905	4.04946927191163	4.29438129322819	-0.723880470229522	0.0947872631889182	0.336870108015143
Merged-chr9-45408531-4	chr9	45408427	45408627	+	830.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_052823, intron 3 of 5)	intron (NM_052823, intron 3 of 5)	2450.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	4.11276734759515	4.16711681610389	3.91897565941414	4.02640791153447	4.20745140266488	4.2377315888475	3.850352823499	3.8633420570028	-0.00250349744566797	0.995360342458027	0.998318694595211
Merged-chr2-76675704-2	chr2	76675604	76675804	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031256, intron 1 of 7)	CpG	389.0	NM_031256	83435.0	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	4.12726628957303	4.26181284012022	5.00724565264346	4.4415009922641	4.26383115226015	4.08584625513105	4.39076769492297	4.49021586228665	-0.42890036310024	0.32536183712112	0.636913344396943
Merged-chr10-77266425-4	chr10	77266324	77266524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030262, intron 6 of 8)	intron (NM_030262, intron 6 of 8)	7124.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	8.81041907481842	8.93842895826215	8.82368512962412	8.74147075272168	8.71734367334259	8.62152281881847	9.00974899393704	8.61304247653131	-0.096827091793695	0.546783562668993	0.796555214156745
Merged-chr6-17837920-4	chr6	17837838	17838038	+	897.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 3 of 15)	intron (NM_022332, intron 3 of 15)	88768.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	4.67733644600723	4.96776068309332	4.86047016583533	5.04926818240643	4.40497765287816	4.73034468402938	4.5340867276727	4.41569249940428	-0.833390068262543	0.0188737879909395	0.123057374315937
Merged-chr6-6542339-4	chr6	6542234	6542434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	36324.0	NM_009169	20422.0	Mm.2469	NM_009169	ENSMUSG00000042541	Sem1	DSS1|Shfdg1|Shfg|Shfm1	SEM1, 26S proteasome complex subunit	protein-coding	6.85986716376926	6.96871199549739	6.60256569110016	6.89661567516287	6.72832824777111	6.96749049853766	7.26112134749401	7.11584766259265	0.253427489810269	0.241543867145342	0.55206148796
Merged-chr10-14102063-4	chr10	14101949	14102149	+	976.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010437, intron 2 of 8)	intron (NM_010437, intron 2 of 8)	135670.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.06857361759431	4.80261823722991	5.42302868461991	5.18821563428343	4.71586401730919	4.7042589916456	4.90805086917432	5.39503248271844	0.0193273231180871	0.979022071798597	0.99259163825749
Merged-chr3-127492811-3	chr3	127492681	127492881	+	847.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	MLT1G1|LTR|ERVL-MaLR	6334.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.09001053864859	3.00035376022623	3.25382832419319	2.57618533033804	4.63154341353346	4.33004794486292	4.32087015758155	4.15031293300111	5.64255443468053	8.62688439748507e-17	1.8778379343382e-14
Merged-chr6-33884327-4	chr6	33884213	33884413	+	906.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 14 of 17)	intron (NM_009148, intron 14 of 17)	-145135.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	4.11631904471348	4.56318822341248	4.49094502989436	4.70579653964517	4.17493625328084	4.57979470195231	4.47025714115909	4.48805242610331	-0.166755721479833	0.676933751633252	0.867354572468851
Merged-chr6-17842966-3	chr6	17842871	17843071	+	782.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 3 of 15)	intron (NM_022332, intron 3 of 15)	93801.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	3.52772862987221	3.44423154986308	3.41815943058803	3.41330823990616	3.5959789040029	3.53182941732746	3.40557650681773	3.52624496156671	0.240616816887964	0.62244741956354	0.838382940565288
Merged-chr16-33755520-4	chr16	33755418	33755618	+	937.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 12 of 14)	intron (NM_175256, intron 12 of 14)	-38519.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	4.91406085026528	4.49154687135916	4.73257419914571	5.00519331278058	4.52299523979748	5.01748777369503	4.71039491184018	5.04037729642253	0.0426432416569445	0.907599072811961	0.96572638861679
Merged-chr17-81670261-6	chr17	81670104	81670304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	CpG	68183.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	4.53751845395111	4.3350751031584	4.02434365457896	4.07449621442898	4.24037324782763	4.20126539241505	4.44452996998735	3.85441621217002	-0.119289486240925	0.784065635684147	0.91594470512568
Merged-chr8-106058756-4	chr8	106058621	106058821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010901)	promoter-TSS (NM_010901)	-882.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	5.99055426371862	6.24360359702896	5.18243499237464	4.77981943717156	5.82979425681641	5.97305323941506	5.6209254061355	5.64581640265143	0.15114666750821	0.700296272071894	0.879078502897649
Merged-chr1-167393822-4	chr1	167393704	167393904	+	969.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025569)	promoter-TSS (NM_025569)	-7.0	NM_025569	66447.0	Mm.218286	NM_025569	ENSMUSG00000026688	Mgst3	2010012L10Rik|2010306B17Rik|2700004G04Rik|AA516734|GST-III	microsomal glutathione S-transferase 3	protein-coding	5.12398027291315	4.94766284927724	4.99291798754615	4.93274813534926	4.85023975796331	4.72355195395319	5.42547274870728	5.15221919539123	0.131453995358257	0.697109892577449	0.877616955442619
Merged-chr7-35737030-1	chr7	35736930	35737130	+	654.5	f0_balb.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	17424.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	2.61642826122484	2.65292969226868	2.55849574462698	2.80994571058642	2.04964244560785	2.15705471143871	2.1365734145646	2.13991881652787	-5.58046159568667	2.19348744333586e-06	7.09360484912327e-05
Merged-chr9-72438481-4	chr9	72438369	72438569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008613)	promoter-TSS (NM_008613)	-60.0	NM_008613	17427.0	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	6.8944664133117	6.81471756241924	6.81317113144317	6.95489202472261	6.88313929567983	6.61398427466818	7.14406542117672	7.12094560349308	0.115920212939135	0.580147970824844	0.815645397153596
Merged-chr10-79669864-4	chr10	79669762	79669962	+	849.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148934, intron 1 of 1)	CpG	452.0	NM_148934	110012.0	Mm.22623	NM_148934	ENSMUSG00000020308	Tpgs1	AV005629|Gm16517|Gtrgeo22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding	3.81788052211275	3.85134607676619	3.64548748528983	3.47779161500449	4.12428060440185	3.99550297835565	3.7481117050013	4.5390074544017	1.20417412832497	0.0114085692676278	0.0866927033095422
Merged-chr1-127242999-4	chr1	127242913	127243113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	38027.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	5.68730224935905	5.83600236637602	5.71426807351293	5.87126884378952	6.05671407622192	6.10038206549844	5.52215015208	5.7102311952961	0.142682856026871	0.597835517416127	0.825621045268087
Merged-chr13-20111463-4	chr13	20111348	20111548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	ORR1F|LTR|ERVL-MaLR	20941.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	6.02025076501894	6.12851281067591	5.95587648467417	5.86694311997458	5.97961494466047	6.15278990038496	5.88037490605668	5.99559780333294	0.0229695493305108	0.923883911175439	0.971863340184091
Merged-chr11-74830011-4	chr11	74829914	74830114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010813)	promoter-TSS (NM_010813)	-910.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	7.38735088549673	7.59177937476204	7.1449152948174	7.52172431658524	7.58641120509298	7.40532429104841	7.67695995712323	7.48027893552762	0.150466600580896	0.425177859596557	0.716745286615087
Merged-chr9-20642622-4	chr9	20642485	20642685	+	967.0238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153857)	promoter-TSS (NR_153857)	-132.0	NM_001361025	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	4.4564880704921	4.19192136559697	4.13530956121269	4.24461914090734	4.72722782086765	4.41116473437344	4.5146898665317	4.45432495327213	0.655553213598824	0.0818474362775952	0.310503508141883
Merged-chr5-93268163-4	chr5	93268051	93268251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007635, intron 1 of 7)	CpG	578.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	6.23452659509527	7.14144256229635	6.67506458682694	6.30192156398755	6.66577570774249	6.85111162589682	6.44978834628635	6.47836249450083	-0.0250265035220709	0.927186131509692	0.973395009656761
Merged-chr6-98959504-3	chr6	98959410	98959610	+	966.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 10 of 17)	intron (NM_001197321, intron 10 of 17)	68788.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	4.43376289099888	4.33965069046583	4.61687601063631	4.89830106341951	3.53939342785932	3.8476997943254	3.70948613451129	4.35061427898344	-1.81241182716578	0.000238146708539726	0.00419476480256104
Merged-chr5-74535621-4	chr5	74535530	74535730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001159574, exon 1 of 16)	5' UTR (NM_001159574, exon 1 of 16)	148.0	NM_001159574	66899.0	Mm.272468	NM_024183	ENSMUSG00000029227	Fip1l1	1300019H17Rik|Rje	FIP1 like 1 (S. cerevisiae)	protein-coding	6.17349849475382	6.31602183580693	6.78230473781996	6.32066396469623	6.37656875600874	6.56401126676515	6.0784441114199	6.73785362280911	0.0664366702526833	0.797089320192686	0.921510421482009
Merged-chr2-36224781-4	chr2	36224698	36224898	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-5628.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	3.91206955847874	3.76345152375511	3.8609568122708	3.91903469886612	4.25371697844302	3.98216283648217	4.24411639332864	3.74909238482554	0.575264124687647	0.193111839426519	0.493236242950346
Merged-chr10-80930572-4	chr10	80930478	80930678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008655, intron 2 of 3)	CpG-1325	487.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	6.54278805173408	7.54751780117002	6.59684693006214	5.86699121113613	7.46373783897298	7.91965050740957	7.22924008397592	6.64285078669057	0.816692125467592	0.155767734494817	0.441609163147605
Merged-chr13-55640664-4	chr13	55640568	55640768	+	866.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282055, intron 3 of 22)	B3A|SINE|B2	5669.0	NM_001282055	212880.0	Mm.202725	NM_145975	ENSMUSG00000021500	Ddx46	2200005K02Rik|8430438J23Rik|AI325430|AI957095|mKIAA0801	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	protein-coding	3.89292546091891	3.98819928876363	3.61339638868821	4.03479134735262	3.98282136965751	3.85154370635403	3.92631162340401	4.16219470620432	0.226053947610922	0.614338533733635	0.833803723831637
Merged-chr3-87369352-4	chr3	87369257	87369457	+	872.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 5 of 5)	intron (NM_009690, intron 5 of 5)	-7030.0	NM_001310545	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	4.51321871229247	4.36731437592318	4.55780775972509	5.04242059666986	4.9411820120342	4.39945159451184	4.90556414539295	4.95816370760963	0.323247926018312	0.419400893940862	0.712515966395674
Merged-chr7-19604479-4	chr7	19604379	19604579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_125835)	promoter-TSS (NR_125835)	7.0	NR_125832	53609.0	Mm.20913	NM_016680	ENSMUSG00000061028	Clasrp	Clasp|Sfrs16|Srsf16|Swap2	CLK4-associating serine/arginine rich protein	protein-coding	7.3929909818959	7.31022067385264	7.27464641415319	7.28801448277295	6.96547573998189	7.25997370611156	7.23831072003507	6.88030697979298	-0.306001707401874	0.10935889550816	0.365191500041067
Merged-chr13-107756482-4	chr13	107756397	107756597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	69100.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	7.81778782699644	7.8215246764623	8.44373291100257	8.28214327742346	7.51487868126022	7.77103871549012	7.77369069009455	7.5163713211555	-0.625382313843201	0.00282261087708287	0.0304733231639438
Merged-chr6-103649158-4	chr6	103649040	103649240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007697, intron 4 of 26)	SYNREP_MM|Satellite|Satellite	138264.0	NM_007697	12661.0	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	9.53233075712171	8.81820342910984	10.0100257841847	7.2142308690585	9.58933710096567	9.57578073632495	8.96959601507655	10.5765621215073	0.682897705620142	0.359711085684699	0.665443059431823
Merged-chr7-102233045-4	chr7	102232927	102233127	+	864.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111937, intron 2 of 5)	B2_Mm2|SINE|B2	9999.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	4.39967103986656	4.71212384573431	4.21688212880993	3.70749320363135	4.56627093048431	4.76856939944673	4.33693774850762	4.21431197515978	0.421390635532742	0.363156088106958	0.668323659570053
Merged-chr6-83005011-4	chr6	83004879	83005079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 5 of 9)	intron (NM_033079, intron 5 of 9)	28492.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	7.42659648857558	7.01973875208322	7.04191717910865	7.39999763933983	7.30048006280832	7.24522848250452	7.5589067776533	7.6156610230672	0.262322297794368	0.202494802657119	0.50494183017091
Merged-chr6-89286914-4	chr6	89286834	89287034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1209.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	6.37529041457296	6.47858918250078	5.76268860277126	6.38009403929925	6.43643501913236	6.48044028254429	6.09618780417059	6.26312095537	0.0652583540448404	0.800508888898901	0.923040237917604
Merged-chr6-16738116-3	chr6	16738004	16738204	+	969.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	160337.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	4.17145768842143	4.27887144417142	4.51076174874661	4.47561503568688	4.08870228767648	3.96676762890525	4.59488086085709	4.21708478238273	-0.324504511517424	0.439457964184708	0.727344520129826
Merged-chr18-55238322-4	chr18	55238206	55238406	+	954.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-245715.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	4.83342789945705	4.61991687690992	4.93769921889257	4.83457366228479	4.36602278011925	4.89596778796448	5.0676579142483	4.71848544231854	-0.0686612255825807	0.85111257277721	0.943894442930937
Merged-chr9-66908184-4	chr9	66908070	66908270	+	984.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	11535.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	5.04026151246382	5.45388994637522	5.00669335789021	5.03642257384927	5.03737411823583	5.48553876475412	4.53254832597143	4.77525988898332	-0.271580649385882	0.466604909389324	0.746420287776482
Merged-chr2-29765021-2	chr2	29764921	29765121	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177392)	TTS (NM_001177392)	3493.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	3.33180349027328	3.52830699153501	3.38893153031877	3.18643485940901	3.26001354689667	3.38539200269182	3.26157398657584	3.59022364366572	0.0754313401745252	0.887261174745713	0.957725928197888
Merged-chr11-117882010-4	chr11	117881938	117882138	+	899.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8512.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	4.67155390709248	4.63748163972615	4.85405294427258	5.09839344082689	4.80426479785395	4.59147764566664	4.44080129244507	4.45760873483692	-0.535621407999764	0.148557648469131	0.430379577476485
Merged-chr5-5266621-4	chr5	5266513	5266713	+	842.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310448)	promoter-TSS (NM_001310448)	-545.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	3.77508576265362	3.58887459078933	3.61541427186984	3.91594828480691	3.77675397199939	3.67247057225121	3.90060804615929	3.82267156036295	0.153610899488225	0.741961943431508	0.898417179766546
Merged-chr8-61911096-4	chr8	61910988	61911188	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8394.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	4.58087712957418	4.27285313465231	4.37397046459227	4.39383177495386	4.2096256447484	4.67461720096537	4.48171797256815	4.75668072751562	0.296937024995572	0.441254248393108	0.728396857622944
Merged-chr11-30771702-4	chr11	30771581	30771781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134013)	promoter-TSS (NM_134013)	-94.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	7.62201360186093	7.78846467827533	7.5979144903276	7.64533621090219	7.38190495073051	7.36439309704305	7.35734598962053	7.20502471980165	-0.44587411149249	0.00977722814927568	0.0776797993567691
Merged-chr17-34685865-4	chr17	34685769	34685969	+	833.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_031176, exon 8 of 33)	exon (NM_031176, exon 8 of 33)	15334.0	NM_031176	81877.0	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding	4.29376514420026	3.8586728076131	4.52650159172726	3.92460116305493	4.18334543073766	4.23831530799413	4.31607735053708	4.20391829636632	0.175168916593931	0.686124426897361	0.871774647810045
Merged-chr15-100049837-4	chr15	100049737	100049937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	11173.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	5.17988096508163	5.60279948595447	5.33862078914878	4.89522881365718	5.6667508060977	5.21777342133474	5.45132627824264	5.3048845229778	0.292771779466661	0.368398050129807	0.67281911392627
Merged-chr8-84423138-3	chr8	84423028	84423228	+	986.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 1 of 47)	intron (NM_001252060, intron 1 of 47)	7764.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	4.83698946341705	4.06618436991585	4.38939737804721	5.22712105055216	3.0017650423325	3.30891217277374	3.25407786179873	3.26311833668909	-7.53211875711991	7.4264058289066e-12	6.81190902700699e-10
Merged-chr10-111134806-3	chr10	111134704	111134904	+	978.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-29998.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	4.28539642012087	4.48707460293718	4.73093741163773	5.03884595529517	4.50942861171413	4.46277774218248	4.11590633285878	4.18328934941317	-0.789421671384727	0.0616265246054153	0.262681262044964
Merged-chr12-100764911-3	chr12	100764807	100765007	+	668.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14150.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	3.44614505054422	3.27643223713914	3.33193766021248	3.59234839047628	3.37663714180972	3.50353739723642	3.43335393599803	3.59900725505653	0.16302606711337	0.751452487290126	0.902145552360104
Merged-chr14-79494419-4	chr14	79494323	79494523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	intron (NM_007920, intron 1 of 8)	-13155.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	5.39616053787911	5.78320730994501	5.24322014209168	4.93457655247451	5.53517823709729	5.45158306819606	5.45356557936807	5.3640246009028	0.158586657295092	0.62441492460343	0.839396965350574
Merged-chr11-32534841-4	chr11	32534640	32534840	+	854.1750490000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	1474.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	4.07094393451362	4.15848581187434	4.34220533663025	4.13106284072899	4.31963900629876	4.09004488061985	4.150220727526	4.37935903385734	0.174294451821486	0.661158481276287	0.859233242450522
Merged-chr10-9882030-4	chr10	9881922	9882122	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081344, intron 2 of 25)	MTB_Mm|LTR|ERVL-MaLR	19018.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	4.83739690774013	4.58978894914093	4.80271353557215	4.56875898649146	5.0514540478869	4.51210492623528	4.36190252384027	5.0872662778179	0.219369885415107	0.568239649189792	0.808586868024762
Merged-chr2-157011169-3	chr2	157011047	157011247	+	937.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164663, exon 15 of 15)	3' UTR (NM_001164663, exon 15 of 15)	-4072.0	NM_025853	66934.0	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	4.12902926067915	4.18280628003482	3.98657432231142	4.01237207483625	4.44546281194689	3.94675075848559	3.75382526728276	4.12711408851116	0.0806596885031158	0.857502493078524	0.94631188010413
Merged-chr3-151749973-3	chr3	151749875	151750075	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133871)	promoter-TSS (NM_133871)	-16.0	NM_133871	99899.0	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	5.6558852281617	5.5659217590872	5.54337964347586	6.25893375986096	4.18419585809709	4.42738020987733	4.20641415100305	4.22196342392742	-3.25024158054918	7.53990094229495e-16	1.39036945381247e-13
Merged-chr4-46591073-3	chr4	46591001	46591201	+	726.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	10828.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	2.9894802725919	2.87981949801827	3.04469363289164	2.82150941147661	2.67510361666225	2.70547870099636	2.80040419289178	2.87120752802359	-0.78987840651128	0.210996890186006	0.515699736944918
Merged-chr14-60765327-3	chr14	60765246	60765446	+	742.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310594)	TTS (NM_001310594)	-2788.0	NM_183175	239126.0	Mm.319636	NM_183175	ENSMUSG00000071347	C1qtnf9	9130217G22Rik|CTRP9|Ciqtnf9	C1q and tumor necrosis factor related protein 9	protein-coding	3.26663804435225	3.55777528908677	2.95269329402059	3.20035932549522	3.04421368845592	3.3222114832858	3.13896010293757	3.1485790693905	-0.376147709140849	0.51943246902428	0.780096713000932
Merged-chr4-106316167-4	chr4	106316067	106316267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183225)	promoter-TSS (NM_183225)	-46.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	5.70505730969359	5.57083624411321	5.77810333626301	5.55559923509931	5.58049287496604	5.63786260960733	5.81636586985236	5.72649292046119	0.0736401132208772	0.77685366707	0.913015118902433
Merged-chr5-62844662-1	chr5	62844562	62844762	+	821.666687	f0_balb.idr	intron (NM_001170705, intron 6 of 8)	intron (NM_001170705, intron 6 of 8)	30839.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	4.24571417422284	4.74406366981175	4.03042715501795	3.49103019722572	4.02437739669973	3.7113854990023	3.69833499210467	3.37664307776048	-1.30189224113147	0.0262298122106953	0.153443186701827
Merged-chr5-104979342-4	chr5	104979233	104979433	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030239, intron 1 of 15)	intron (NM_030239, intron 1 of 15)	3384.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	6.16835786916561	5.36386076904405	6.02029220137168	6.31814959556975	5.53548237072046	5.20644186870579	5.62613415682402	5.62411799179554	-0.841878497745733	0.00800787327845776	0.0672557418392148
Merged-chr9-110781997-2	chr9	110781897	110782097	+	748.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16188.0	NM_153099	235628.0	Mm.292285	NM_153099	ENSMUSG00000044664	Prss42	Tessp2	protease, serine 42	protein-coding	3.15925470286298	2.88927102907795	3.1025748807994	3.23622953593071	2.79291789589836	3.08919693564623	3.03201432068272	3.21249611305751	-0.295045033183103	0.625249775744947	0.839786976127647
Merged-chr13-45571876-3	chr13	45571782	45571982	+	681.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 5 of 6)	intron (NM_001199304, intron 5 of 6)	64438.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	3.3770275566883	3.41656021030261	3.43714395737183	3.65169769666089	3.21374413316135	3.81975317147722	3.42423897957467	3.74468027493012	0.271519060344828	0.614649523226687	0.834034302764837
Merged-chr19-46506502-4	chr19	46506407	46506607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	4859.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	6.10069640438636	5.71969844195295	5.90074689765027	5.8338972236432	5.42723729063828	5.29580766390084	6.07036268105264	5.63055624618475	-0.41608195579354	0.1586709115699	0.445699953221543
Merged-chr8-95000800-4	chr8	95000699	95000899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018882, intron 1 of 13)	intron (NM_018882, intron 1 of 13)	16400.0	NM_018882	14766.0	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	6.0639752262282	5.71958673530687	5.56350355437567	5.51712993505202	5.88629647124446	6.0933581682725	5.91048329180162	6.02069664256062	0.415604363042554	0.117057470049037	0.378522336026731
Merged-chr4-133449915-2	chr4	133449819	133450019	+	767.75	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-30214.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	3.75210838138604	4.16432382018703	3.79978242584712	3.82458865739583	3.39855403554295	3.27002279033501	3.14703600219919	3.29646655169332	-2.09912316152381	0.000193651776711019	0.0035406986423102
Merged-chr15-101146476-6	chr15	101146417	101146617	+	948.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17995.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	5.36119155448627	5.06025194786576	5.59864978314688	5.44804191005597	5.23371821411016	5.13673887264963	5.39151907575492	5.32914990684773	-0.191934467676608	0.521210390094006	0.781250328647867
Merged-chr3-137971177-2	chr3	137971077	137971277	+	637.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 1 of 8)	intron (NM_011932, intron 1 of 8)	10372.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	3.03850059810596	3.09740102850059	2.92420700844501	2.42992815726125	2.77516988304609	2.76740916104328	2.78880492783408	2.86132254085914	-0.443178284205758	0.524114480754378	0.782768094706475
Merged-chr19-44294901-4	chr19	44294836	44295036	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009128, exon 2 of 6)	exon (NM_009128, exon 2 of 6)	1260.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	5.14745684613605	5.33616849615883	4.53379060190323	5.03657770282743	5.09678046910858	4.97616040788668	4.92682022580446	4.98238739894389	-0.093687453347113	0.785643796616103	0.916599143290613
Merged-chr17-64668653-4	chr17	64668535	64668735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 7 of 21)	intron (NM_008549, intron 7 of 21)	66986.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	6.77613255581354	6.48352549361117	6.77732529406557	7.14904948087219	6.43617756744178	6.32406705660318	6.77004403896558	6.4952260804275	-0.453500714143492	0.0614703917600973	0.262355787132843
Merged-chr9-47628302-1	chr9	47628202	47628402	+	582.333313	f0_c57.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	97950.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	2.67412099111041	2.45254245958229	2.59399757743147	2.16548726467714	3.2728981823085	3.46916680973412	2.94576819971947	3.39053024958766	5.0292155798269	2.4690573097129e-08	1.21036522209404e-06
Merged-chr14-17850963-6	chr14	17850808	17851008	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	MER2|DNA|TcMar-Tigger	-130736.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	3.84708780016915	3.87843189743797	3.73932978691933	3.94901273668517	4.13978976386777	4.06938096256547	3.72557797191962	4.16569310686853	0.485358157823682	0.272096382416404	0.583670356609054
Merged-chr2-120572322-4	chr2	120572216	120572416	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	T-rich|Low_complexity|Low_complexity	4645.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	5.06655143038546	5.26862138034175	4.92794999025423	4.50385925247866	5.21112462216171	5.20787152042431	4.9403208546223	5.12825220691733	0.331758308408194	0.344458860867047	0.652914285727938
Merged-chr15-103305821-2	chr15	103305721	103305921	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4617.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	4.32069191856461	4.01548213937161	4.12673939275484	4.44306340086163	4.3536496074169	4.6216364792561	4.38857442961019	4.76967029525893	0.666276434309417	0.0988718284039587	0.344693043736366
Merged-chr1-138940602-4	chr1	138940502	138940702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA8|LINE|L1	-23107.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	6.77408164921306	7.64203315259261	7.01289080675105	7.10218412393016	7.44126869591096	7.53285968948605	6.69401541701008	6.84504655798157	0.00797884576431447	0.97711934378816	0.991848175629581
Merged-chr16-57189700-4	chr16	57189613	57189813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 10 of 17)	intron (NM_026254, intron 10 of 17)	11758.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	6.70751590738479	6.83975988595966	6.60315262415334	6.63229435645613	6.41756568903096	6.57597902225346	6.79777384028832	6.3373526964236	-0.226899894157877	0.29984390316467	0.612114296709154
Merged-chr2-84811068-4	chr2	84810971	84811171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_024230)	TTS (NM_024230)	11581.0	NM_024230	68678.0	Mm.33452	NM_024230	ENSMUSG00000027077	Smtnl1	1110030K22Rik|CHASM	smoothelin-like 1	protein-coding	6.56733158018792	6.72524224207856	6.75264009126634	6.69667080060276	7.03727681722482	6.89986919615132	6.51840399018144	6.46061144238424	0.104983833768116	0.64454455408534	0.850317618994707
Merged-chr1-154032834-4	chr1	154032723	154032923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	132894.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	7.76354931999346	7.96386860961121	7.47938399001012	7.35774027805264	7.84988607888693	7.75943117757708	7.8656016269234	7.36256087406007	0.090575546515547	0.673325299151958	0.865717176504662
Merged-chr4-155705022-4	chr4	155704872	155705072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026899, exon 1 of 5)	5' UTR (NM_026899, exon 1 of 5)	157.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	6.43554925635426	6.94733917609534	6.01311768622231	6.2299817187996	6.48988567586217	6.787618742231	5.98242102784847	6.37959151876271	-0.0209633447918554	0.943456390107761	0.979567973035961
Merged-chr6-114397878-4	chr6	114397777	114397977	+	948.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317126)	promoter-TSS (NM_001317126)	-59.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	5.22870741043981	4.71755578009239	4.90950597521291	4.80539834741544	4.46434778653774	4.70257765475529	4.50459448378411	4.52207753115389	-0.797446295280973	0.026223501190383	0.153437122172649
Merged-chr14-72600523-4	chr14	72600389	72600589	+	870.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	109514.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	3.94964712645571	3.91221838845201	3.63283186557647	3.88345754447882	3.84716556864375	3.68874332636934	3.93315025050594	4.12237481469064	0.151244766724997	0.737881213971418	0.896555867875472
Merged-chr11-105467403-3	chr11	105467305	105467505	+	731.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10670.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	3.20257459691866	3.46186562746366	3.74388313551918	3.49321312252118	3.34449472882856	3.67089182431832	3.31876576374644	3.32895409089618	-0.230054197892468	0.667384081816776	0.862418422708621
Merged-chr15-81831616-4	chr15	81831518	81831718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20204.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	6.62980021829613	6.73654401075853	6.12844195638043	6.58333357482493	6.524955281843	6.6613320460228	6.74132553651378	6.82450855278884	0.20565116383189	0.369516382545304	0.673697051642945
Merged-chr7-112405206-3	chr7	112405099	112405299	+	895.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027587, intron 7 of 9)	ORR1E|LTR|ERVL-MaLR	-22507.0	NM_020606	57342.0	Mm.143763	NM_020606	ENSMUSG00000030770	Parva	2010012A22Rik|5430400F08Rik|AI225929|AU042898|Actp|CH-ILKBP|Parvin	parvin, alpha	protein-coding	3.39324734361801	3.59015766592785	3.55827084113526	3.91217993422757	3.01229818264224	3.24885235122956	3.68727443261299	3.20414380136141	-1.11639828646038	0.0592588583145845	0.256537299353717
Merged-chr10-89732340-4	chr10	89732225	89732425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359468)	promoter-TSS (NM_001359468)	-30.0	NM_025914	67019.0	Mm.335292	NM_025914	ENSMUSG00000019948	Actr6	2010200J04Rik|AU044443|Arp6|ArpX|CDA12	ARP6 actin-related protein 6	protein-coding	6.76385389820965	6.91962009367618	6.55266431524863	7.13910774021354	7.14891059789986	7.05703625424834	7.32691391226649	7.00531749409934	0.360755123051464	0.0990296645326841	0.345000365379314
Merged-chr13-116000291-4	chr13	116000193	116000393	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	309395.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	5.7925441035664	5.47373440623883	5.53308846760223	6.53193626661124	5.94586595626862	5.59156589987569	5.61507167517067	5.16526066688282	-0.507307239700594	0.163026933023386	0.452613076904267
Merged-chr6-113285137-4	chr6	113285043	113285243	+	981.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170673, intron 6 of 19)	intron (NM_170673, intron 6 of 19)	2836.0	NM_170673	211232.0	Mm.65597	NM_170673	ENSMUSG00000030270	Cpne9	A730016F12Rik|mKIAA4217	copine family member IX	protein-coding	5.32159906485832	4.821445179097	4.78700225868961	4.9143901778604	5.23862951770511	5.22349312762488	5.44825064776019	4.74179907320281	0.410268527908928	0.234521724124058	0.544421428220754
Merged-chr2-142699074-3	chr2	142698978	142699178	+	833.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 23 of 26)	intron (NM_001355123, intron 23 of 26)	202386.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	3.54767130837417	3.51533181448858	3.49190113221194	3.58409902929994	3.73861003084735	3.54737023078317	3.82427556924559	3.43143365260853	0.350168594077592	0.470704953330385	0.749352684420019
Merged-chr9-114747993-6	chr9	114747832	114748032	+	859.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026036, exon 4 of 4)	3' UTR (NM_026036, exon 4 of 4)	16729.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	2.14468335075892	2.24307446256177	2.2273001423388	1.978482704015	2.766928974732	2.75171605242695	2.56877121018527	2.57806319212816	3.72427710506854	9.38916240641734e-06	0.000260279896981588
Merged-chr19-46502251-4	chr19	46502127	46502327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_053100, exon 1 of 6)	5' UTR (NM_053100, exon 1 of 6)	579.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	5.20697537682668	5.21747009957874	5.06913223035854	5.1249665472159	5.21769409899336	5.17410131041274	5.61912244622337	5.93228856350514	0.651020567713761	0.0419200410069451	0.207440670107991
Merged-chr4-149772655-4	chr4	149772642	149772842	+	883.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027460, intron 1 of 6)	intron (NM_027460, intron 1 of 6)	1525.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	3.39300205048549	3.04273187211846	3.61958888507454	3.3604077368114	3.63400874490165	3.62928119821811	3.70290692409897	3.89560007900126	1.13379290712848	0.0302149989913494	0.168073883495253
Merged-chr3-67587629-4	chr3	67587530	67587730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025813, intron 4 of 15)	MTE2a|LTR|ERVL-MaLR	4862.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	6.36064822414156	5.9769360282236	5.74884160021217	6.4701537507265	6.34710955004681	5.90079215824079	6.20681489360158	5.79792734909227	-0.142171748193449	0.620655553031628	0.83740120836379
Merged-chr6-116006952-4	chr6	116006851	116007051	+	961.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11946.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	4.85343549565243	5.1961852930003	4.95976392494616	4.87663644979385	4.94890654350454	4.74675261850223	4.7563735519895	4.77556246731189	-0.318102427966514	0.336098303364159	0.646244323954596
Merged-chr18-24206299-4	chr18	24206204	24206404	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001361200, exon 1 of 13)	5' UTR (NM_001361200, exon 1 of 13)	310.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	5.61021105424695	5.2219173520501	5.73421745222171	5.74793967780539	5.69640336117491	5.65021773181489	5.63316231232534	5.25204320344289	-0.0464315517991936	0.87432914460141	0.952841261958902
Merged-chr19-53390692-4	chr19	53390588	53390788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356986)	promoter-TSS (NM_001356986)	-54.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	8.87970656452807	9.15828315914103	8.4827571098989	8.70017244833188	9.05921049604224	9.05915374492866	9.00911303754161	8.81670748623228	0.200019095549434	0.274838695964363	0.586581569311358
Merged-chr9-46014509-4	chr9	46014398	46014598	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	1678.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	5.31458563413856	4.9879048066818	5.28677431129765	5.32387113673881	5.00408543333579	5.13377137519505	4.77472370851105	5.47135681967595	-0.225864321980938	0.491356503638627	0.762962820807111
Merged-chr2-119156990-4	chr2	119156888	119157088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033136)	promoter-TSS (NM_001033136)	46.0	NM_001033136	67809.0	Mm.475909	NM_001033136	ENSMUSG00000070730	Rmdn3	1200015F23Rik|AI131757|Fam82a2|Ptpip51|RMD-3|Rmd3	regulator of microtubule dynamics 3	protein-coding	6.37524568864033	6.2321974653682	5.82500501208755	6.17382494823518	6.94412804271415	6.49845566457313	6.1306381721208	6.90322572509686	0.735993778182723	0.00670026846242044	0.0589317344799213
Merged-chr3-60542579-3	chr3	60542453	60542653	+	860.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	41374.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	3.92420039660162	3.72570414840126	4.1000013343593	4.0191360661146	3.59386244916738	3.72411234505585	3.860453240681	3.71940843155985	-0.670783697583212	0.144762446027672	0.423930146704668
Merged-chr9-31841327-1	chr9	31841227	31841427	+	962.0	f0_balb.idr	Intergenic	Intergenic	71958.0	NM_013800	12023.0	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	3.41424656857077	3.09036083006029	3.20041641704526	3.7323460330747	2.96190250478036	3.05222800807062	3.00329113379962	3.07675469284857	-1.48791783690139	0.0157352985485335	0.108445276470378
Merged-chr8-77112981-4	chr8	77112902	77113102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083906, intron 3 of 8)	intron (NM_001083906, intron 3 of 8)	210494.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	5.23140129248782	4.93744749177147	4.98190714969262	5.25897408842395	4.80309212518426	4.9323959515337	4.92311997638168	4.90743791903001	-0.457093699005104	0.15167310512223	0.435394344360064
Merged-chr9-95575793-4	chr9	95575703	95575903	+	868.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15986.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	4.18310185236842	4.51088667339086	4.231287336059	4.08660923305048	4.3355043666526	4.53497994365128	4.34441346657619	4.22871418474757	0.26069222130565	0.508968941688584	0.773835474540333
Merged-chr12-35462824-4	chr12	35462737	35462937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72152.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	6.44504094655052	6.26591458950876	6.77838576481049	6.75818529187719	6.35577464881829	6.55161625690119	6.43029699337308	6.31440113861852	-0.25650408669762	0.270933637173591	0.582721788450994
Merged-chr10-37342531-3	chr10	37342434	37342634	+	809.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-203608.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	4.16795564370358	3.45590156803877	3.88907099533739	4.06215640104182	3.21182188291672	3.3865627740407	3.62788971518778	3.33825230128439	-1.71705669016312	0.00198084219625249	0.0232231649104982
Merged-chr6-119377782-4	chr6	119377674	119377874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	ORR1E|LTR|ERVL-MaLR	10960.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	5.96616579563125	5.62127077596776	5.94497578811168	5.98438208903028	6.33930627844561	6.05168013452444	6.00083798284863	5.84771803310401	0.303478619103125	0.241448891758566	0.552034276752374
Merged-chr17-29380725-6	chr17	29380586	29380786	+	962.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	19772.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	4.53614236153157	4.34740694997216	4.9409548884556	4.76001417928626	4.72408717974518	4.94400596880253	4.51633625620097	4.61753027815815	0.0859226702608654	0.816824579862194	0.929553084400708
Merged-chr17-35865916-4	chr17	35865780	35865980	+	936.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175242)	promoter-TSS (NM_175242)	-248.0	NM_001146710	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	4.7323354779826	5.30052566293971	4.73312241700992	4.30997042228508	4.80906902325867	4.83082314401434	4.37340912118583	4.23612441682386	-0.471682681589091	0.279189359946733	0.591369431345506
Merged-chr14-60273874-4	chr14	60273786	60273986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144843, intron 1 of 13)	intron (NM_144843, intron 1 of 13)	8681.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	6.45393139541529	6.6316253151338	5.79259393637645	5.36843114901242	6.26406247916271	6.59813649575844	6.00098402510263	5.55897140958332	-0.0086355585143834	0.987137970348467	0.995258250959001
Merged-chr15-85811693-4	chr15	85811590	85811790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164625)	promoter-TSS (NM_001164625)	7.0	NM_001164626	72355.0	Mm.33706	NM_197998	ENSMUSG00000064284	Cdpf1	2210021J22Rik	cysteine rich, DPF motif domain containing 1	protein-coding	7.73908585551306	7.70156069096315	7.17182389418945	7.54936417960858	7.51616984837	7.73445498705809	7.6474069278254	7.55203734304327	0.0680460249044453	0.7254109041676	0.890917401015595
Merged-chr4-48045083-4	chr4	48045005	48045205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015743)	promoter-TSS (NM_015743)	-200.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	7.95316894008234	8.08358840641612	7.79489594124565	8.05547430405634	8.20493874214303	8.12495479854587	8.30464599418283	8.27396458250612	0.31592931566712	0.0501957514323417	0.232343553337584
Merged-chr5-114823401-4	chr5	114823291	114823491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181075)	promoter-TSS (NM_181075)	77.0	NM_181075	330173.0	Mm.482205	NM_181075	ENSMUSG00000092486	2610524H06Rik	-	RIKEN cDNA 2610524H06 gene	protein-coding	4.74108296814844	4.99287568860058	4.96357620292689	4.60733526179493	4.75595878281063	5.03149017034514	5.18302852118867	4.89056408161637	0.291215542420679	0.391801474182346	0.69151323193794
Merged-chr2-177957300-4	chr2	177957217	177957417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282028)	promoter-TSS (NM_001282028)	-29.0	NM_001190302	665211.0	Mm.441314	NM_001190302	ENSMUSG00000078862	Gm14326	-	predicted gene 14326	protein-coding	6.13189267638309	5.92709341593722	5.86071434393255	5.5900070720994	6.08778071634402	5.53273418005333	6.27572513279365	5.56948445826322	0.0546414292277417	0.856044707967819	0.945817584844565
Merged-chr6-39810949-4	chr6	39810853	39811053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001010930)	promoter-TSS (NM_001010930)	-17.0	NM_001010930	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	7.75110246563335	7.77603134652948	7.60835885927369	7.93254882750101	7.83351404560505	7.74025855271684	8.07298614721425	7.83218594950406	0.123570483703489	0.482319328623607	0.757206984982019
Merged-chr3-59153582-4	chr3	59153482	59153682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287119)	promoter-TSS (NM_001287119)	46.0	NR_045641	320463.0	Mm.484506	NR_045641	ENSMUSG00000036381	F630111L10Rik	-	RIKEN cDNA F630111L10 gene	ncRNA	6.99393171633695	6.6552265089997	6.99515230359284	7.16614458433513	7.12794726654293	6.98239624203041	7.24986258256568	7.01516632095615	0.172427887364589	0.407044795538737	0.703457348417477
Merged-chr15-58144740-3	chr15	58144642	58144842	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029734, intron 1 of 5)	intron (NM_029734, intron 1 of 5)	3376.0	NM_001326599	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	5.5914249449916	5.25320737261709	4.96064993183274	5.98662033032618	3.88194964143864	4.08340810084884	4.12487802981979	4.07736050891111	-3.39526711489839	1.02710723211674e-13	1.34638058333034e-11
Merged-chr12-80852212-4	chr12	80852101	80852301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 3 of 6)	intron (NM_001242419, intron 3 of 6)	61669.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	5.86797074728812	5.89845113033977	6.33644105029247	6.52721179222217	5.74682047521108	6.04645535160422	5.95578607549985	6.24410839817367	-0.31056794210279	0.270321801181385	0.582168027784025
Merged-chr6-129375295-4	chr6	129375193	129375393	+	992.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001204223)	TTS (NM_001204223)	10210.0	NM_027709	71183.0	Mm.79402	NM_027709	ENSMUSG00000030158	Clec12b	4933425B16Rik	C-type lectin domain family 12, member B	protein-coding	5.12010295701638	5.15982574425247	4.94590373183898	5.2230009263921	5.42452394496066	5.22804269844786	5.02941868903508	4.97956170675142	0.118703491745036	0.704874776273482	0.881499054770458
Merged-chr16-16896504-4	chr16	16896412	16896612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176833)	promoter-TSS (NM_176833)	43.0	NM_176833	68606.0	Mm.230296	NM_176833	ENSMUSG00000026181	Ppm1f	1110021B16Rik|4933427B07Rik|CaMKPase|Popx2|mKIAA0015	protein phosphatase 1F (PP2C domain containing)	protein-coding	8.06260684629213	8.01289417956955	7.59936056242936	7.78563804799041	7.81490666474833	8.08586904158181	8.14626920836152	7.94550934178103	0.160496975919857	0.385299941127721	0.686713186006212
Merged-chr1-89302720-3	chr1	89302606	89302806	+	790.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103427.0	NR_040482	77331.0	Mm.374962	NR_040482	ENSMUSG00000099938	C030007H22Rik	-	RIKEN cDNA C030007H22 gene	ncRNA	3.83638423116939	3.76423394783767	3.88338246426359	4.01152326196618	3.26154832483096	3.63316104325236	3.61812801690796	3.63030825972843	-1.09897339777805	0.0268249926858946	0.155704017754316
Merged-chr5-100500023-4	chr5	100499913	100500113	+	981.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359914, intron 1 of 13)	CpG	626.0	NM_172714	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	4.44031812215069	4.85602408056595	4.9307293057396	4.73190078465082	4.97099857026725	5.16743073867101	4.64632046219474	4.92737808365808	0.38019630146244	0.274188405850266	0.585933560930861
Merged-chr9-105502573-3	chr9	105502493	105502693	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253831, intron 1 of 26)	intron (NM_001253831, intron 1 of 26)	-7460.0	NM_001253836	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	3.48904719346507	3.50683111936956	3.48951130821475	2.47351615413628	5.63423584578531	5.20381805906201	5.56299008990718	5.21356054967431	7.76109087643001	1.34919914042819e-14	2.03895213623224e-12
Merged-chr2-130733666-4	chr2	130733563	130733763	+	937.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029432, intron 27 of 36)	intron (NM_029432, intron 27 of 36)	-36144.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	4.43925400756465	4.1348379898338	4.2603837307738	4.45001286596736	4.61612977721741	4.38803491618419	4.57554174444028	4.59429898800162	0.489353331136798	0.190946108637481	0.490311892807621
Merged-chr11-97744070-5	chr11	97744025	97744225	+	802.366638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106180)	promoter-TSS (NR_106180)	579.0	NM_054051	108083.0	Mm.39700	NM_054051	ENSMUSG00000018547	Pip4k2b	AI848124|PI5P4Kbeta|Pip5k2b|c11	phosphatidylinositol-5-phosphate 4-kinase, type II, beta	protein-coding	3.45951847983055	3.52854826689366	3.57033795074539	3.43671596614843	3.52821435510496	3.68638802968043	3.44717650998303	3.66964974581103	0.290322230841321	0.547560249078489	0.796916412152817
Merged-chr7-24081838-4	chr7	24081737	24081937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045486)	promoter-TSS (NM_001045486)	-60.0	NM_001289640	210135.0	Mm.32254	NM_172483	ENSMUSG00000057101	Zfp180	2310040I01Rik|AI852378|D130011P11|HHZ168	zinc finger protein 180	protein-coding	7.92048086876608	8.15061600705623	7.98556804633015	7.86585209555579	8.15348518499859	8.21060828539278	8.31466651919017	7.81037772870246	0.197361685232182	0.272720506374989	0.584138684652025
Merged-chr4-142054235-3	chr4	142054137	142054337	+	767.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	ID_B1|SINE|B4	-30061.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	3.06583958430053	3.39393851622865	3.1993511232484	3.54657764855358	3.31195651472746	3.37329750467235	3.65478098261125	3.25969025685419	0.279432921530759	0.621767357053289	0.838003935782923
Merged-chr11-57934494-4	chr11	57934414	57934614	+	952.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74550.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	4.40048636104641	4.4654136318466	4.16479174081102	4.43445230712269	4.52764328939057	4.53021432108811	4.50362395852871	4.48191507187972	0.303549875311546	0.407247916639611	0.703586879884121
Merged-chr4-134160241-1	chr4	134160141	134160341	+	677.5	f0_c57.idr	intron (NM_144527, intron 3 of 13)	RLTR4_MM-int|LTR|ERV1	26844.0	NM_144527	70012.0	Mm.26542	NM_144527	ENSMUSG00000037443	Cep85	2410030J07Rik|AI173272|AI173504|Ccdc21	centrosomal protein 85	protein-coding	2.68241524932197	2.61373701752976	2.68266688573642	2.21680079729739	3.67637840261968	4.05641905559398	3.42194891666814	3.53892781126926	7.60516061250348	2.67155283846507e-14	3.91112747074414e-12
Merged-chr11-54092398-3	chr11	54092293	54092493	+	964.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8531.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	3.94234435548355	4.0855330553097	3.88916369957061	4.14510865845314	3.89320428033826	4.35203220681457	4.07424229625483	4.30456474138296	0.337575393866714	0.432884460065862	0.722699260772323
Merged-chr4-126202832-4	chr4	126202736	126202936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146153)	promoter-TSS (NM_146153)	-126.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	8.55614169057326	8.96237888414277	8.7206958531941	8.340839998009	8.83894511579644	9.04319977636267	8.64231323386779	8.66311477200844	0.181423562587485	0.339553929231423	0.648774648981312
Merged-chr2-132019424-4	chr2	132019273	132019473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 1 of 10)	intron (NM_175445, intron 1 of 10)	10615.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	5.4280393746535	5.22562400813476	5.80164413368617	5.43430031544413	5.15524055264122	5.03731662560253	4.99112120230521	5.18689001742749	-0.701880638571624	0.0226979857304137	0.139217572279631
Merged-chr17-87474434-3	chr17	87474316	87474516	+	904.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27481.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	3.42417783141623	3.72782835298263	3.36575445421167	3.45242677592478	3.55043060202812	3.47895491698271	3.57181104880637	3.36409952048084	-0.0143617624838513	0.977293084177343	0.991888117862217
Merged-chr5-117933012-4	chr5	117932885	117933085	+	901.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 19 of 27)	intron (NM_008712, intron 19 of 27)	-43785.0	NM_145564	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	3.84723630507576	3.76130351380784	4.28286433365224	4.00713090262703	4.20251783824329	4.23257537298089	4.22177843502281	4.32036799210498	0.653902724659016	0.119401397507039	0.382384090410191
Merged-chr6-113062461-3	chr6	113062353	113062553	+	684.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008188, intron 5 of 9)	intron (NM_008188, intron 5 of 9)	14791.0	NR_027010	14910.0	Mm.280950	NR_027008	ENSMUSG00000086429	Gt(ROSA)26Sor	AV258896|Gtrgeo26|Gtrosa26|R26|ROSA26|Thumpd3as1	gene trap ROSA 26, Philippe Soriano	ncRNA	3.65258718081407	3.76918702839412	3.65309066787001	3.63760969265094	3.71160258429276	3.65886210719957	3.68942532168955	3.48306873452552	-0.109943959808068	0.814573653191396	0.92840582625946
Merged-chr11-88999430-4	chr11	88999324	88999524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009546)	promoter-TSS (NM_009546)	21.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	8.10353964474049	8.29752406014319	7.75600715838444	7.82916067261096	8.10395962261302	8.50827758663716	8.19825706087172	8.08674180311025	0.281925825029528	0.150888644146135	0.433908484230677
Merged-chr13-45394365-7	chr13	45394247	45394447	+	893.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153789, intron 2 of 6)	intron (NM_153789, intron 2 of 6)	4605.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	3.5800746177668	3.91975853022904	3.79578801485075	3.4567156614153	3.84928625664835	4.10396601155531	3.31398492622703	3.69048406346376	0.218246643628416	0.678777182623475	0.868149953232707
Merged-chr8-4165358-3	chr8	4165276	4165476	+	708.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1191.0	NM_001039578	213027.0	Mm.437106	NM_153536	ENSMUSG00000011832	Evi5l	1700084G18Rik|2310039H16Rik|3110007G05Rik|B130050I23Rik	ecotropic viral integration site 5 like	protein-coding	2.82224707272599	2.73547688752984	2.6124964044906	2.67122026218625	3.20624579969022	2.99472013547448	2.99172631171876	2.88439842448995	1.43297926517853	0.0194502682959411	0.125572385396077
Merged-chr5-33821168-6	chr5	33821047	33821247	+	873.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-21965.0	NM_175231	107823.0	Mm.19892	NM_175231	ENSMUSG00000057406	Nsd2	5830445G22Rik|9430010A17Rik|AW555663|C130020C13Rik|D030027O06Rik|D930023B08Rik|MMSET|Whsc1|Whsc1l|mKIAA1090	nuclear receptor binding SET domain protein 2	protein-coding	4.24412968176806	3.53788365571154	3.67090756914877	3.61427292277474	3.75246707713796	3.73277826316725	3.7621029209227	3.77568059119425	-0.0987754693835675	0.842043950178596	0.940096405454667
Merged-chr17-46640124-4	chr17	46640014	46640214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357130, intron 4 of 15)	intron (NM_001357130, intron 4 of 15)	5966.0	NM_001357130	74764.0	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	5.75198621854826	6.08113054048989	5.55962620077262	6.13802512480234	6.01726507696301	6.0731040204877	5.74912259214005	5.89400596012284	0.027364721795402	0.919729522070018	0.970404489214993
Merged-chr7-83658840-4	chr7	83658738	83658938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 12 of 18)	intron (NM_001360088, intron 12 of 18)	-3343.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	5.6233458182247	5.59086283334146	5.82243275189816	5.7186233071828	5.90125164215139	5.74549935851338	5.64820711670169	5.72321245940179	0.120314118500835	0.638126148851584	0.847040716325261
Merged-chr14-77905533-4	chr14	77905451	77905651	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 1 of 11)	intron (NM_029495, intron 1 of 11)	1312.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	4.45553260689396	3.99419858728982	4.45623186296826	4.31037884319517	5.32617601087402	4.80191923398813	4.78883960728557	4.77425669018883	1.37889961649023	0.000316115960763298	0.00528933191611914
Merged-chr14-60251970-3	chr14	60251814	60252014	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170591)	promoter-TSS (NM_170591)	-435.0	NM_001362439	71844.0	Mm.258051	NM_170591	ENSMUSG00000114797	Nupl1	1700017F11Rik|Nup58|mKIAA0410	nucleoporin like 1	protein-coding	5.41741862524393	5.29630886307044	5.41835098651304	5.30154893873435	5.50411389001566	5.50395363757567	5.64829434453545	5.44303935018997	0.305967725014839	0.258383850868877	0.570279197550257
Merged-chr16-30385671-4	chr16	30385603	30385803	+	922.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128096, intron 2 of 33)	intron (NM_001128096, intron 2 of 33)	2827.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	4.33282455222253	4.30172686509468	4.28958043977515	4.4739513279179	4.52139998436779	4.27317061898852	4.1792348152707	4.24155256804068	-0.0941536354111612	0.808814096608117	0.92615112212231
Merged-chr3-138442760-1	chr3	138442660	138442860	+	1000.0	f0_c57.idr	promoter-TSS (NM_007410)	promoter-TSS (NM_007410)	-333.0	NM_007410	11532.0	Mm.3874	NM_007410	ENSMUSG00000028138	Adh5	Adh-5|Adh3|GSNOR	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding	6.43030306494141	6.65482711022363	6.37838344941613	6.06055292279479	6.54382590705837	6.64136661114262	6.55995645216915	6.28017745168779	0.188928636097986	0.433982570612026	0.723327995916111
Merged-chr17-29347853-4	chr17	29347741	29347941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019880)	promoter-TSS (NM_019880)	91.0	NM_019880	56462.0	Mm.3224	NM_019880	ENSMUSG00000024012	Mtch1	2310034O17Rik|AI255158|AU018396|C77849|PSAP	mitochondrial carrier 1	protein-coding	7.98575730758075	8.23528280064314	7.83763119293682	7.67243615524884	7.90516418093472	7.90460854300575	7.76143620559795	7.75438037613794	-0.142011453924694	0.451582874727216	0.736149171862599
Merged-chr11-49901752-4	chr11	49901637	49901837	+	997.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347462)	promoter-TSS (NM_001347462)	-98.0	NM_029004	74563.0	Mm.258798	NM_029004	ENSMUSG00000020374	Rasgef1c	9130006A14Rik	RasGEF domain family, member 1C	protein-coding	4.63143751576863	4.92712776288011	4.78876324152522	4.55607657047747	4.71497496643399	4.76585355146717	4.93639852515447	4.82185571354531	0.178423340888363	0.600286495097445	0.826760171717672
Merged-chr3-107783503-4	chr3	107783402	107783602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23033.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	6.44278974687955	6.39117125660827	6.55929402926093	6.64786352873955	6.50389435336554	6.35351438084886	6.54141298600375	6.40436191056676	-0.0984274928372293	0.646046971225048	0.851204149823479
Merged-chr7-122329296-3	chr7	122329191	122329391	+	909.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	40166.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	3.66644547154459	3.63758491700956	3.97136717221908	3.95032627793233	3.94641490581718	3.78475176917855	3.70849605101608	4.01318478249703	0.138784533301023	0.763331511251822	0.90713960302321
Merged-chr7-3957606-3	chr7	3957506	3957706	+	824.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42105.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	4.2072094034045	4.28118432392598	4.33295110662125	4.32882811274818	3.82628498631004	4.33450481701847	3.95148640687132	3.73623738164127	-0.827909084928244	0.0575153237186401	0.251683464094989
Merged-chr2-102999003-4	chr2	102998905	102999105	+	919.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74508.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	5.17314073514448	5.86470345315369	4.72099721470333	4.01176322666587	4.73713451471177	5.12687124963022	4.69827585471399	4.58680111083322	-0.62841291382268	0.371179407148635	0.675218087972974
Merged-chr3-51415929-4	chr3	51415769	51415969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053089)	promoter-TSS (NM_053089)	-147.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	6.51553978568946	6.53921121354017	6.54938378618679	6.61887964411315	6.5671607061941	6.62488282597224	6.53192234169173	6.42654818492786	-0.0314032909566217	0.878296796463949	0.95447628439811
Merged-chr7-73569230-4	chr7	73569129	73569329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10834.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	5.72011019345285	6.06220345989921	5.3817436382457	5.40950536639113	5.78228550208651	5.94410816120469	5.85379793167443	5.5012611081365	0.18481654000893	0.534840959371657	0.789425619054709
Merged-chr6-129472851-4	chr6	129472747	129472947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132130)	promoter-TSS (NR_132130)	-68.0	NR_132130	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	6.76099945351563	7.2111816929778	7.14021446947349	7.30024578492544	7.11481790535691	7.23545921875168	6.87076055632751	6.61266825400407	-0.200154149685147	0.382492104115476	0.684560538944663
Merged-chr14-52120354-4	chr14	52120250	52120450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168515, intron 4 of 24)	intron (NM_001168515, intron 4 of 24)	9447.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	5.64604513743155	5.89916462101951	6.13935988358917	6.25081798759597	5.70458943084115	5.68132610018698	5.69761178845133	5.72252988731569	-0.515458884955915	0.0549679997908479	0.244964140815976
Merged-chr2-44334218-4	chr2	44334130	44334330	+	948.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 13 of 14)	intron (NM_001301831, intron 13 of 14)	-268906.0	NR_040622	320872.0	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	5.08495387828246	4.9408712818129	5.26494140902045	5.36456465610353	4.76601034567469	4.6173000907049	5.12291386841467	4.87378154862092	-0.639030308989782	0.0572989773874315	0.250970128159411
Merged-chr14-103920375-4	chr14	103920284	103920484	+	929.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75908.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	5.00997190834734	5.20026685982625	5.26774042949964	5.52903609321886	4.77710498959832	5.03808151604965	5.26996169946894	4.89615146866697	-0.531812450330854	0.107980937360031	0.362559597364667
Merged-chr13-64180426-4	chr13	64180312	64180512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019986, intron 5 of 7)	C-rich|Low_complexity|Low_complexity	18546.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	5.26869595571112	5.73396536398087	5.88092193436805	5.77366128679644	5.44629228806089	5.63548407071892	5.51699907786413	5.54094228344459	-0.270593740120469	0.336283204313861	0.646333562921219
Merged-chr5-130253418-4	chr5	130253322	130253522	+	906.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023248, intron 2 of 4)	intron (NM_023248, intron 2 of 4)	2108.0	NM_023248	66711.0	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	SBDS ribosome maturation factor	protein-coding	4.21528853247368	4.68670191107777	4.59830043756802	3.74996082522877	4.67091832257441	4.53174753654332	4.6465792054614	3.81551018160986	0.217894726547569	0.662353800335464	0.860024465132126
Merged-chr7-46033649-4	chr7	46033543	46033743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153057)	promoter-TSS (NM_153057)	-53.0	NM_153057	211548.0	Mm.274811	NM_153057	ENSMUSG00000030835	Nomo1	D7Ertd156e|Nomo|pM5	nodal modulator 1	protein-coding	8.09800031660273	8.25356281275134	8.32217542717933	8.03224508800523	8.2298815309882	8.25743254088877	8.13547519683101	8.03488052740176	-0.0102268777375658	0.950149351830632	0.982204611275017
Merged-chr11-69795416-4	chr11	69795296	69795496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291104)	TTS (NM_001291104)	541.0	NM_009601	11443.0	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding	7.98761259946061	7.90400791979221	7.56871560566199	7.99513426259532	7.7136685996865	7.84400402987073	7.74310998324082	7.6866790546406	-0.175731832579411	0.321401087434127	0.633133368457469
Merged-chr12-100732049-4	chr12	100731951	100732151	+	814.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6931.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	4.10361720137744	3.67398744177209	4.18864492267152	4.06293256334082	4.07292313464935	3.87486248429062	3.7409440544978	4.01135832731743	-0.227316013064361	0.616452252273977	0.835000758617851
Merged-chr8-60632778-4	chr8	60632681	60632881	+	992.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027756)	promoter-TSS (NM_027756)	-44.0	NM_027756	71306.0	Mm.23242	NM_027756	ENSMUSG00000031647	Mfap3l	4933428A15Rik|5430405D20Rik|AI461995|AW125052|NYD-sp9|mKIAA0626	microfibrillar-associated protein 3-like	protein-coding	6.41298052993226	6.49237486540522	6.59145850660226	6.69788466950288	5.29339211775193	5.32119660840706	5.62415364902959	5.64899044304056	-1.72922113958855	1.11673452797513e-11	9.998496473804e-10
Merged-chr11-76482379-4	chr11	76482277	76482477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	12118.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	6.15776711751089	6.46614496835353	5.96564388111192	6.09224731951795	6.06793155335393	6.41089274363848	6.25872428193133	5.73380288902388	-0.0699889887893658	0.791877281294797	0.919389841376717
Merged-chr12-40585801-6	chr12	40585688	40585888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	139735.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	5.51538689106397	5.61473187906156	5.62208844048373	5.26715632084252	5.37858080948141	5.74416212960827	5.54223294188352	5.59251937041403	0.112069085813231	0.691516383538708	0.87454056920491
Merged-chr6-129498031-4	chr6	129497936	129498136	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138648, intron 3 of 7)	intron (NM_138648, intron 3 of 7)	9129.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	4.63387229610212	4.82814926337127	4.78315931488782	5.00624524630353	4.60684056147349	4.35001874238076	4.82757186917349	3.98436691644117	-0.739447304755586	0.0705537817613755	0.28469911249716
Merged-chr16-18423277-4	chr16	18423180	18423380	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007744, intron 1 of 4)	intron (NM_007744, intron 1 of 4)	-3137.0	NM_001353143	26462.0	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	5.02671081467166	4.79705281791311	4.82833602289812	5.37539584708524	4.75493508551123	4.43461526223858	4.33770131030649	4.63151749629837	-1.00929430597177	0.00776327723163025	0.065736653589128
Merged-chr5-41707170-4	chr5	41707067	41707267	+	951.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132325, intron 1 of 5)	intron (NR_132325, intron 1 of 5)	524.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	4.95271373515437	4.73169473537729	4.69135395196929	4.81750453290435	5.02221907611418	5.1252284639038	4.6280199792546	5.0477338195091	0.336554740591527	0.312749565160118	0.624630357151774
Merged-chr3-52029864-4	chr3	52029767	52029967	+	782.762512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	75139.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	4.06361689676459	4.14011735341028	3.96441236470216	4.13607346121615	4.26657390199555	3.97646170391701	4.18236374145526	4.19841650136741	0.213055457467223	0.600052225962707	0.826709457103583
Merged-chr4-116246110-3	chr4	116245954	116246154	+	889.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355586, intron 1 of 9)	B2_Mm1t|SINE|B2	23307.0	NM_001355586	18710.0	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55|p55pik	phosphoinositide-3-kinase regulatory subunit 3	protein-coding	3.09594444691479	3.33745453077195	3.35523194183685	3.22724160885883	3.34349240575295	3.63854132220784	3.78047919891008	3.41096242448737	1.00570697199462	0.0563504580020721	0.248588115905144
Merged-chr19-46619057-3	chr19	46618952	46619152	+	884.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	-4349.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	4.4759712966509	3.45643976967258	3.63868636951321	3.55707075437288	4.43181037156889	3.82183037031412	3.99549279239469	3.75486617428389	0.482517253252431	0.390942917613969	0.690867352703316
Merged-chr5-74790447-2	chr5	74790326	74790526	+	756.200012	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87523.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	3.03778528822236	3.05513998300012	3.37550457406163	3.13295006804046	2.37537887123476	2.60644701798543	2.5724910122764	2.49819255375212	-4.56907540287506	1.61545933999993e-05	0.000423368116207125
Merged-chr1-57392698-4	chr1	57392608	57392808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037742, intron 5 of 7)	intron (NM_001037742, intron 5 of 7)	-13840.0	NM_001081181	68115.0	Mm.275428	NM_001081181	ENSMUSG00000025971	Maip1	9430016H08Rik|AA409999|C78988	matrix AAA peptidase interacting protein 1	protein-coding	5.34497560211193	5.57090050357174	5.70896384178613	5.73267424318324	5.59906967217733	5.67347213814958	5.65567816246576	5.68041933301835	0.0662533478732039	0.804005985331587	0.924493051202757
Merged-chr10-80808720-2	chr10	80808620	80808820	+	725.799988	f1_balb.idr|f1_c57bl6.idr	exon (NM_028001, exon 7 of 7)	exon (NM_028001, exon 7 of 7)	3472.0	NM_007445	11705.0	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	3.00558424385223	2.91209418853411	3.00593602152759	2.8132979221665	3.40843839938413	3.46457665290493	3.11852262457813	3.06811603575437	1.40418478122288	0.0140851713900209	0.100417509452153
Merged-chr17-78264594-6	chr17	78264484	78264684	+	953.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 2 of 16)	Tigger12A|DNA|TcMar-Tigger	64336.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	3.67256781093523	3.69105770688867	3.67311181611737	3.37425943916387	3.43918370206573	3.63262601080147	3.38795249183343	3.4576450519588	-0.393509135847482	0.436313410644617	0.725087510987815
Merged-chr3-8987225-3	chr3	8987127	8987327	+	758.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	MER57-int|LTR|ERV1	16977.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	3.71608020232172	3.72081097760314	3.53569246346225	3.30717512356062	4.34219766593322	4.14359691188651	3.90764619007422	3.96983786459519	1.57164221978623	0.000790831108694446	0.0111378249872897
Merged-chr6-108660520-4	chr6	108660417	108660617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011498)	promoter-TSS (NM_011498)	-112.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	8.31127258813347	8.24261219392028	8.52772132305493	8.30969135640062	8.51932417120954	8.34189047659094	8.51166656161958	8.24421379552587	0.0798852508617118	0.621517586763347	0.837859854322505
Merged-chr11-71817659-4	chr11	71817547	71817747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66632.0	NM_001357965	216881.0	Mm.48648	NM_177618	ENSMUSG00000020811	Wscd1	mKIAA0523	WSC domain containing 1	protein-coding	6.28732675474251	5.95405200168131	6.48967717252042	6.78040839113079	6.14811210991461	5.7266179280497	6.08167024910113	6.02216183936102	-0.633896260895418	0.0226747118007312	0.139125532940035
Merged-chr9-118807830-3	chr9	118807717	118807917	+	945.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 4 of 13)	intron (NM_001113514, intron 4 of 13)	96125.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.83940994711831	3.40764353405912	3.58733766670825	3.73641667414884	3.62158690086193	3.58734550545913	3.26467624665862	4.08542409991538	0.0608714335173428	0.91034594824516	0.966671146059764
Merged-chr7-63755730-4	chr7	63755630	63755830	+	994.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130880, intron 13 of 13)	intron (NM_130880, intron 13 of 13)	-161127.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	4.5760655212001	5.27163104673785	4.79467775923953	5.22753411352415	4.76211674750382	5.08478011982652	5.20652255283024	5.04564475347354	0.023623819333446	0.947788320370368	0.981348536548879
Merged-chr2-79621594-4	chr2	79621497	79621697	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-13828.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	4.97371467501059	4.90963204276412	4.97456878554454	5.15456562978516	4.61735297879752	4.35378795744859	4.02883836170599	4.83803962882361	-1.08183616732854	0.00590214281846959	0.0536241296996139
Merged-chr2-132110906-4	chr2	132110799	132110999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	34209.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	7.08368575584026	7.52087707597324	7.06070686467996	7.21182740043762	7.13321482693142	7.2377347206604	6.59364083083989	7.13846017429543	-0.253702148558443	0.259910834770549	0.571684145019647
Merged-chr18-47368930-3	chr18	47368820	47369020	+	993.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018744)	promoter-TSS (NM_018744)	-50.0	NM_001311097	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	4.52329557440014	4.63524482804531	4.56265477347773	5.32384265014675	3.94628756723078	4.00734801627258	3.98498530742711	3.93958694234533	-2.1014204125389	3.42508829075928e-06	0.000105767617981759
Merged-chr15-6340545-4	chr15	6340421	6340621	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	40732.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	4.96960110683793	4.71494493809157	5.27135337731811	5.45700262087368	4.81860678877884	4.33950457136743	4.91203519228469	4.78482255424233	-0.815501613428059	0.031835635563787	0.174156226492345
Merged-chr13-23738830-4	chr13	23738722	23738922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015786)	promoter-TSS (NM_015786)	15.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	7.32876452721743	7.11594284884229	7.36090366594995	7.31250213501351	7.33383758172882	7.69070358521696	7.58818141847878	7.52649912822634	0.336689419325065	0.06749259154207	0.277226335817012
Merged-chr9-44192881-3	chr9	44192787	44192987	+	930.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	L1MB4|LINE|L1	41159.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	4.06029019210411	3.63161376892784	3.82090453284674	4.33495895789059	3.89077023426226	3.83003734768818	3.57851761424301	4.05836590149412	-0.418750470198481	0.400395774295943	0.698199689340163
Merged-chr3-137938688-3	chr3	137938557	137938757	+	895.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 6 of 8)	intron (NM_011932, intron 6 of 8)	20102.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	3.71671204811996	3.5646624199269	3.35192688654197	3.4573053558175	3.45467584607114	3.26824984521545	3.45398969153342	3.51950093307193	-0.324924601710155	0.525370411305036	0.783252235625498
Merged-chr15-50820377-4	chr15	50820283	50820483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	68666.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	6.88744997095727	6.95304973694956	6.67334743456341	7.14699980109837	6.93479436826368	6.68440959061165	6.99044242045464	6.42808428741995	-0.215221714431303	0.347653783391373	0.655546119710951
Merged-chr18-44714622-3	chr18	44714532	44714732	+	877.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-52366.0	NM_001085374	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	4.09228021341278	4.06654288117453	3.97250932738722	3.99038476491116	3.15832087012659	3.14299293324857	3.2504397039099	3.39598911594835	-2.90562967723578	8.99602240793875e-07	3.18412669803417e-05
Merged-chr2-118745665-4	chr2	118745574	118745774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301269)	promoter-TSS (NM_001301269)	-84.0	NM_001301269	100043272.0	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik	InaF motif containing 2	protein-coding	6.34974066108468	6.25522197601896	6.09070778575652	6.3185488297185	6.38393699100051	6.63006517128465	6.60632118420641	6.27187117856283	0.318892984040132	0.157180958807789	0.443633112612697
Merged-chr11-96916138-3	chr11	96916042	96916242	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030248, intron 2 of 13)	CpG	372.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	4.95410904498442	5.47601171794427	4.73262110222247	4.69271108789454	4.80501197213187	4.74013834376164	4.74998999000876	4.88175139897459	-0.409542813334351	0.269285349660288	0.580867382976835
Merged-chr3-9644436-4	chr3	9644340	9644540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34355.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	6.68260042686435	6.73321522261545	6.40306343205123	6.91477664867372	6.46202079436057	6.38227437883293	6.64970591433871	6.79205761193944	-0.188739402672362	0.409639363051703	0.705214871926678
Merged-chr2-58920335-3	chr2	58920208	58920408	+	936.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	L2a|LINE|L2	165124.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	3.82513869869739	3.585518458677	4.16328261510418	4.14801228747898	4.04170964311267	3.83072047866197	3.96434970679384	4.35593960294908	0.274154432035698	0.563644062821151	0.806428731514002
Merged-chr5-17843452-4	chr5	17843352	17843552	+	864.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	6340.0	NM_001159557	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	4.08218622947358	4.32338383372528	4.23067683998939	4.84078421010826	4.1247916403143	4.35751479515496	4.21231654251131	4.27382459975055	-0.446109788166936	0.306098852456573	0.618593623499989
Merged-chr18-65495973-4	chr18	65495897	65496097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	65000.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	6.33947451625164	7.05238365967461	6.93466542092361	6.36615948604256	5.9394883917316	6.08279972577422	5.68535816297779	5.01219569561316	-1.4762728965445	1.17558848729363e-05	0.000318527647267125
Merged-chr7-29784016-4	chr7	29783924	29784124	+	974.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360207)	promoter-TSS (NM_001360207)	56.0	NM_001360209	22693.0	Mm.292690	NM_013705	ENSMUSG00000047473	Zfp30	2610306P15Rik|Zfp-30	zinc finger protein 30	protein-coding	5.44611284586463	5.35084324286032	5.42059394574837	5.8408003019659	4.72001468135581	4.81937860401424	4.83501045713454	5.2141728675367	-1.19816829517694	0.000274593933374544	0.00472178190742923
Merged-chr6-54285158-4	chr6	54285063	54285263	+	938.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 7 of 12)	intron (NM_001163640, intron 7 of 12)	12341.0	NM_023543	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	5.37749739138354	4.72586604376918	5.29737215123684	5.10346172716416	4.75045368978504	4.88438742291661	5.45081851402448	4.94205515161784	-0.21284475568138	0.555082553006514	0.80121730233361
Merged-chr7-89481935-3	chr7	89481837	89482037	+	953.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35649.0	NM_029614	76453.0	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	5.17345001058601	5.28251472616437	6.08490823139225	5.06548989444004	4.09200763872738	4.15399636710835	4.1308577271071	4.87051208973397	-2.29024046543221	7.36687968904252e-07	2.64297948279414e-05
Merged-chr19-34217199-3	chr19	34217132	34217332	+	860.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360719)	promoter-TSS (NM_001360719)	-276.0	NM_001360719	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	3.19876125685313	3.51169055175817	3.24987465540367	3.08968862336683	2.46558474507427	2.56949380314036	2.54020756286363	2.54500795623559	-5.4217529992421	1.27316336088755e-06	4.35685071464495e-05
Merged-chr18-9485440-4	chr18	9485336	9485536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35282.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	5.54799473224581	5.57182466069774	6.10930075980435	6.33390939883275	6.41533174783533	5.78805495717847	5.86509404729527	6.04446581053644	0.172143456468346	0.585019446122588	0.817967689863277
Merged-chr17-26500473-4	chr17	26500350	26500550	+	916.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	8022.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	4.88993166415454	5.50495515675557	4.19195416985506	3.77749616956607	4.69897317751582	4.37859528601915	4.17378149836165	4.43558119864659	-0.736189035744667	0.333382106316855	0.644131513179354
Merged-chr11-63948593-4	chr11	63948495	63948695	+	940.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15631.0	NR_131111	78883.0	Mm.410764	NR_131111	ENSMUSG00000086359	9630013K17Rik	-	RIKEN cDNA 9630013K17 gene	ncRNA	4.89396815518336	4.89547389975017	4.85108198373301	4.99560195988536	6.00289687478294	5.44693656289671	5.88511742628831	6.09248246126206	1.6796475679948	2.25364737243408e-08	1.11474889730706e-06
Merged-chr16-70326789-4	chr16	70326684	70326884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 1 of 15)	L1MD2|LINE|L1	12835.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	5.60835909900071	5.63897852662116	5.69398596399029	6.22391821991337	6.34450298656115	5.97584292822344	6.30983945575698	5.89154154039964	0.484435390220865	0.0960244066219089	0.339549060926442
Merged-chr7-30650283-4	chr7	30650170	30650370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133693)	promoter-TSS (NM_133693)	-42.0	NM_133693	68035.0	Mm.401747	NM_133693	ENSMUSG00000036733	Rbm42	1700003D06Rik|3100004P22Rik	RNA binding motif protein 42	protein-coding	8.47101612409631	8.81733900235637	8.36181733754974	8.51141244149594	8.63299583195186	8.64007816464106	8.51111695126398	8.2709910750817	-0.0371011670558254	0.833038116167392	0.936221000578989
Merged-chr16-23375082-4	chr16	23374984	23375184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-54049.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	7.22340796294704	6.59556849749652	7.72402581474821	7.44046205542636	6.8286821603899	6.72067064849575	7.23061302783466	7.31294317508525	-0.357608358948663	0.193721970888556	0.493910062279647
Merged-chr10-39321627-6	chr10	39321483	39321683	+	924.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48216.0	NM_001122892	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	3.7107448655218	3.30349320300802	3.86813679187443	4.2066533311937	3.70535506899463	3.65112987446887	4.15297932803841	3.96056065894981	0.163755758120832	0.765554217860047	0.908309649125696
Merged-chr7-134566569-2	chr7	134566469	134566669	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104118.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	2.85016154633566	2.76311504565914	2.78438439099328	2.77314905876546	2.95776371498867	3.02211729508418	2.96215821986012	3.08389147129647	0.945100505514413	0.106979813868571	0.360772927359385
Merged-chr10-77967271-4	chr10	77967161	77967361	+	807.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 2 of 33)	intron (NM_138301, intron 2 of 33)	2611.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	3.61777743118422	3.4763001592844	3.07962884998888	3.41380735238725	3.65966208231904	3.51976775576802	3.50220148147538	3.46025199014605	0.430883892023879	0.411677909325039	0.707123186245418
Merged-chr3-115682539-4	chr3	115682441	115682641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	32514.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	6.25002975850154	6.45631810287669	6.25113309783209	6.35785703736864	6.13477241795348	6.24254528226461	6.42932123746439	6.20776769372466	-0.125283440432715	0.576335428781094	0.813496063401474
Merged-chr19-43669587-4	chr19	43669489	43669689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145156, intron 1 of 3)	intron (NM_145156, intron 1 of 3)	5292.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	5.90097097454735	5.8512598828801	6.23829742607441	6.26571598169106	5.91902619944109	6.14866034496357	6.07083714778613	6.40569395750046	0.0822702048047068	0.750700213323467	0.901855648088396
Merged-chr6-39278531-4	chr6	39278427	39278627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71754.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	7.00391026057057	6.84005130496818	7.30997348764219	7.24051981608436	5.88831663739369	6.18736347263784	6.41604856134795	5.97463445998507	-1.43843392571752	1.78605797856275e-09	1.09406042044852e-07
Merged-chr1-171382273-4	chr1	171382176	171382376	+	911.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122680, intron 2 of 7)	B2_Mm1t|SINE|B2	-6684.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	4.51586201514106	4.3544835646601	4.16605303961249	4.10576774027815	4.48537136655259	4.34279692354312	4.24441815152059	4.6579518082837	0.379796473998425	0.334251100015312	0.644805241742718
Merged-chr8-35725378-2	chr8	35725288	35725488	+	721.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	101171.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	3.12455532813691	2.83933431732371	3.05728637325445	2.90290091783423	3.80528719268891	3.36690033237581	3.55274182022998	3.41788950983809	2.15301373440961	0.000120248264175481	0.00236310082709734
Merged-chr5-117159980-4	chr5	117159890	117160090	+	960.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	26402.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	5.56579957125566	6.15181300879824	5.62113657303933	6.49284050053819	5.51943036396388	5.12558106428899	5.29661164216752	5.44679121711631	-1.12196896908949	0.000742091783023718	0.0106024389851155
Merged-chr11-55463163-4	chr11	55463066	55463266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1958.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	5.69778596883409	5.73580727510822	5.82355741799408	5.93047460612705	5.92400700526212	5.61771484691237	6.22822456326284	5.74610424548838	0.153002340642902	0.567870043157148	0.808351591137394
Merged-chr19-40995780-3	chr19	40995670	40995870	+	875.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1235.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	4.5172865186144	4.31083545407691	4.33820889779192	4.33477521168913	3.79191703250473	3.75515055916309	3.6856844768091	3.81755663975061	-1.68658040117754	0.000143195349454153	0.00274434619784523
Merged-chr7-135605239-4	chr7	135605143	135605343	+	852.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316679)	promoter-TSS (NM_001316679)	-585.0	NM_001316679	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	4.02353592055555	3.98351970575698	3.976755039206	4.14079273508363	3.91503350485145	3.94276891221199	3.80885254736494	4.06725868687681	-0.290067366850096	0.495716866348605	0.765874409085869
Merged-chr6-56691492-3	chr6	56691386	56691586	+	946.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	13213.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	4.26970796571814	4.35039913082825	4.27035701685297	4.59031348252496	4.06775059320381	4.2534415928679	4.29514106795237	4.2677319924815	-0.429358820670438	0.279432519960638	0.591495502480744
Merged-chr4-138304675-4	chr4	138304559	138304759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007838)	promoter-TSS (NM_007838)	-79.0	NM_007838	13200.0	Mm.7236	NM_007838	ENSMUSG00000028757	Ddost	-	dolichyl-di-phosphooligosaccharide-protein glycotransferase	protein-coding	8.43499752862168	8.86801740679671	8.65607264692978	8.37259537503791	8.40414540313868	8.81644816134268	8.49253437777913	8.55503640496341	-0.0279194224573548	0.878904579704034	0.954717086851438
Merged-chr6-124496554-2	chr6	124496454	124496654	+	869.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181344, intron 2 of 5)	MLT1A0|LTR|ERVL-MaLR	3441.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	3.67293886796389	3.82354831948035	3.34550970201116	3.04854314378348	3.50949729654477	3.7441838956355	3.20498613699975	3.4043637638746	-0.0857089843316983	0.883685087668559	0.956342055191766
Merged-chr1-93754092-4	chr1	93753989	93754189	+	937.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174874)	promoter-TSS (NM_174874)	749.0	NM_025920	67026.0	Mm.272356	NM_025920	ENSMUSG00000026279	Thap4	2010320B01Rik	THAP domain containing 4	protein-coding	4.44803388609779	4.09853887853826	4.7475752753533	4.50444643926383	4.22450638942135	4.4912397567752	4.38600939941839	4.67610915628268	-0.0447984873245483	0.911040672931858	0.966904162861598
Merged-chr17-88524266-3	chr17	88524164	88524364	+	636.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-5860.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	3.4827246222638	3.54727521605574	3.17889611047015	3.42355414565458	2.61375481444267	2.8116769468154	2.77424134248365	2.85492768958143	-3.44969716872769	1.45143723480324e-05	0.000384904779436779
Merged-chr10-108178589-4	chr10	108178495	108178695	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027892, intron 1 of 25)	RSINE1|SINE|B4	16195.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	5.2233835670309	5.10177572098085	5.66420948215246	5.96818845258751	5.00973222899627	4.94174180804837	5.58819041783681	5.34564353063828	-0.540096840627902	0.134811404886927	0.408712027789699
Merged-chr4-129033292-4	chr4	129033185	129033385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24986.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	7.6011601600742	7.91737682017965	7.09576587325346	7.09800593847509	7.62488657906668	7.72755810296411	7.25915354856598	7.50918765152884	0.0911067988955554	0.707668692360725	0.882529695648857
Merged-chr3-154305613-4	chr3	154305529	154305729	+	875.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010713)	TTS (NM_010713)	24931.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	4.43409785381198	4.28507063470493	4.43479987955996	5.19717755485803	4.44077469888088	4.11187603956229	4.28261444061195	4.2018823425344	-0.899527666763686	0.0456879840510625	0.219124386279265
Merged-chr5-32734144-2	chr5	32734036	32734236	+	907.099976	f0_balb.idr|f1_balb.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	12206.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	3.35808371322209	3.36647450101777	3.46370249180388	4.01161063249425	2.77482207597768	2.93913653563756	2.89894465646264	3.18136883567104	-2.71072133637174	0.000101531193387346	0.00205659897954408
Merged-chr12-91852943-4	chr12	91852860	91853060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3803.0	NM_011344	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	5.59479068478857	5.86063704684423	5.98009375820648	5.68622273461719	6.02978025046204	6.15337028027886	5.42025594639904	5.56349674438107	0.0780412783783582	0.790309623092661	0.918828686312538
Merged-chr10-80348517-4	chr10	80348427	80348627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285435)	promoter-TSS (NM_001285435)	-79.0	NR_104340	66548.0	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	5.53066994097756	5.97513962764374	5.47401262773133	5.53107169388329	5.50017133558637	5.56044593960659	6.05945465897921	5.44041232892788	0.0317471996161766	0.916202058070187	0.968918528564949
Merged-chr1-194976398-4	chr1	194976326	194976526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033564, exon 1 of 5)	non-coding (NR_033564, exon 1 of 5)	533.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	7.13363345822122	7.23683303215375	8.07896805849604	7.47484509625342	7.21549704415894	7.34909388090998	7.4849228760325	7.5347567943393	-0.180168374353818	0.458998785279016	0.741698438951511
Merged-chr6-22124722-4	chr6	22124614	22124814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081351, intron 10 of 21)	intron (NM_001081351, intron 10 of 21)	138804.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	5.63268297300671	6.47099570330497	6.19052919167063	6.51708305645677	6.00507260334446	5.94412122106334	5.90965953384023	5.91224166227879	-0.497269421246626	0.0780019237076568	0.30203225915491
Merged-chr3-95042614-4	chr3	95042516	95042716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008951)	promoter-TSS (NM_008951)	-2.0	NM_008951	19185.0	Mm.2261	NM_008951	ENSMUSG00000005625	Psmd4	Af1|Mcb1|angiocidin	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	protein-coding	7.58243124789369	7.49725505268841	6.91353417177338	7.24914452160563	7.40062254708593	7.60705816984268	7.58811001235014	7.41519437350548	0.225750405884848	0.275985401140804	0.58804666193048
Merged-chr6-88903449-1	chr6	88903349	88903549	+	680.0	f0_balb.idr	intron (NM_011906, intron 1 of 11)	intron (NM_011906, intron 1 of 11)	1198.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	3.63856765983963	3.85558257065224	3.41013323587622	2.82984416647517	3.75392680264949	3.5901484509152	3.77052703637488	3.63693240620239	0.603406031277228	0.319352322619726	0.631193707043275
Merged-chr15-80025893-4	chr15	80025779	80025979	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11071.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	6.16691397235966	6.85872659457121	6.15022947961486	5.50235452580661	5.53333706792474	5.39985164056053	4.70966603162058	4.96781577327701	-1.78176402383108	0.0020994601830438	0.0242794189116577
Merged-chr7-43636346-4	chr7	43636222	43636422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028236, intron 1 of 5)	intron (NM_028236, intron 1 of 5)	1583.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	6.31826074474919	6.35800054678553	6.44314824728468	6.36341704361837	6.33142135437446	6.43856715173259	6.47546654157757	6.29617636450196	0.0207768696926065	0.922363817280041	0.971254721435825
Merged-chr7-24380147-3	chr7	24380097	24380297	+	957.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163510, intron 4 of 8)	intron (NM_001163510, intron 4 of 8)	9934.0	NM_008433	16534.0	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	3.25491507566984	3.15497601675665	3.18434033868266	3.24528255146196	3.71118115953184	3.6850114247188	3.84076508514975	4.16563257962651	2.09134013459494	6.38341725418126e-05	0.00139034656283772
Merged-chr2-27354956-4	chr2	27354845	27355045	+	926.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	72663.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	4.21027489107934	4.60033378960403	4.25672094768381	4.28724160959339	4.05470286103935	4.2892997492545	4.19264344825732	4.29825995479311	-0.351269610967078	0.379636495059127	0.682157007046657
Merged-chr2-166786780-4	chr2	166786694	166786894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6973.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	5.38556699225119	5.76295628902563	5.08099461022611	5.32698353463083	5.63674386413376	5.59174210626699	5.60444157012631	5.62902428678458	0.349306994775225	0.228985045945088	0.537900616657055
Merged-chr2-128948374-4	chr2	128948282	128948482	+	816.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-4362.0	NM_020594	57432.0	Mm.11675	NM_020594	ENSMUSG00000027387	Zc3h8	AU020882|E130108N08Rik|Fliz1|Zc3hdc8	zinc finger CCCH type containing 8	protein-coding	4.02364563586122	4.19104260020212	3.58214999101556	4.04685612825358	3.98951051770572	3.82644761598214	3.95963233954209	4.23649280703184	0.0709356918099337	0.877513098628296	0.954199567096042
Merged-chr8-108783409-4	chr8	108783322	108783522	+	884.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	68778.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	4.68516223161471	4.54985807797259	4.68592461775339	5.23503200731221	4.65680749607689	4.36442667992943	4.54553510179632	4.47724544082568	-0.684034881376247	0.080895280368766	0.308560375187203
Merged-chr4-3913643-4	chr4	3913538	3913738	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019969, intron 2 of 5)	intron (NM_019969, intron 2 of 5)	24767.0	NM_019969	56711.0	Mm.331467	NM_019969	ENSMUSG00000003282	Plag1	-	pleiomorphic adenoma gene 1	protein-coding	5.05249678165775	4.43601821028214	4.58946603610064	5.05363081134084	4.92248977859411	4.53637347012922	4.69050440579141	4.85683146828891	-0.115882520754207	0.75885876822037	0.905362100252389
Merged-chr17-23677485-4	chr17	23677394	23677594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013749)	promoter-TSS (NM_013749)	-45.0	NM_013749	27279.0	Mm.28518	NM_013749	ENSMUSG00000023905	Tnfrsf12a	AI255180|C87282|Fn14|HPIP|TWEAK-R|TweakR	tumor necrosis factor receptor superfamily, member 12a	protein-coding	6.5905406895935	6.42672249529222	6.27152597366685	6.52907784480852	6.47159094497944	6.09946503858297	6.46589580499237	5.94078736272838	-0.279969738339043	0.250732806895297	0.561983514248837
Merged-chr10-111465010-4	chr10	111464903	111465103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8224.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	6.17656856169415	5.83025319062117	5.85964700969567	6.08841017797542	6.14554172161358	5.96204237603008	6.06919976691885	5.78110929944545	0.00338806571895832	0.989210330876862	0.995658844162507
Merged-chr5-8312519-3	chr5	8312386	8312586	+	897.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 3 of 28)	MIRc|SINE|MIR	55674.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	3.24207085546322	3.31810618903568	3.35292848120359	3.56908249799727	3.0768327404728	2.94763371711619	3.28612518181258	3.18192206459128	-0.984191533160783	0.0861460772316236	0.319897309644706
Merged-chr11-23805986-4	chr11	23805893	23806093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35023.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	6.33995915206704	6.1822877647257	5.68586116548352	6.30149889733752	6.261053789694	6.28592149254085	6.64485737940355	6.16689561469342	0.286899798300309	0.273027462808276	0.584458265171883
Merged-chr6-134615449-4	chr6	134615340	134615540	+	973.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026345, intron 3 of 3)	intron (NM_026345, intron 3 of 3)	17048.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	5.62599779507547	4.87443391455712	4.71335906573847	4.9504473215381	5.50358369042046	5.43902312779971	5.35257083271057	4.95940628612744	0.457612280276126	0.205737897161718	0.509445159300775
Merged-chr5-43879990-4	chr5	43879899	43880099	+	985.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	T-rich|Low_complexity|Low_complexity	11190.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	5.00179960180411	5.528740370555	5.88743219960021	4.92996789577929	5.54663350474332	5.39986295299888	5.59425258905683	5.48990785481381	0.217720591444632	0.526295663803555	0.78360873224853
Merged-chr13-107781969-4	chr13	107781866	107782066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 3 of 14)	intron (NM_145456, intron 3 of 14)	94569.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	5.3286374673951	5.50793138827325	5.13407198966424	5.47152484039933	5.41323582477033	5.2759974526017	5.36177515838327	5.52123095935553	0.0307174057347663	0.914543810666502	0.968075694115833
Merged-chr13-29983728-2	chr13	29983634	29983834	+	890.583374	f0_balb.idr|f0_c57.idr	intron (NM_010093, intron 1 of 6)	intron (NM_010093, intron 1 of 6)	657.0	NM_001289920	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	4.05750248647165	3.95384800092412	4.47881968268308	4.03851937078114	4.5796430716235	4.65037532900335	4.41754929701549	4.69488031881384	1.06188718045582	0.0067008154986212	0.0589317344799213
Merged-chr7-28392307-2	chr7	28392207	28392407	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019458)	promoter-TSS (NM_019458)	383.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	4.04849333773255	4.53895375505734	3.9390305996061	3.99193297077708	4.24090621653768	4.50457425248039	4.1803737297789	4.5969724477464	0.574478271463276	0.180246704429242	0.476611410681675
Merged-chr6-140819616-4	chr6	140819493	140819693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	192708.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	5.8191319436094	5.63455336054077	6.0208233358071	6.10956713784232	5.99133973466389	5.73070270894924	5.99004585904824	5.81602594949165	-0.0453558282794315	0.862499210339167	0.948209611440753
Merged-chr1-156459844-4	chr1	156459750	156459950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 2 of 15)	intron (NM_009230, intron 2 of 15)	14478.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	7.04852003602501	6.85692675351439	7.01439787057277	7.47244865782387	6.61188044579273	6.53336639783818	6.52460299350968	6.6365016838551	-0.782776035274083	0.000508381713750535	0.00781388512266235
Merged-chr17-74880250-4	chr17	74880153	74880353	+	822.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125276.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	3.90121005733681	3.54977971445734	3.90176101097139	3.97160795430639	4.17491220964694	3.97010688887139	4.49907199534579	4.22651752784174	1.00225707439963	0.0258283767294658	0.151792990588375
Merged-chr19-32689991-2	chr19	32689891	32690091	+	846.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026487, intron 6 of 9)	intron (NM_026487, intron 6 of 9)	22307.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	3.6652970105264	3.64543500161004	3.45110577282695	3.2584120399424	3.4313324329114	3.73365736615416	3.54847786097238	3.5062953729997	0.166515456270627	0.744183088414976	0.89923574268619
Merged-chr1-87758540-2	chr1	87758432	87758632	+	634.25	f0_balb.idr|f1_balb.idr	intron (NM_029846, intron 1 of 17)	intron (NM_029846, intron 1 of 17)	2521.0	NM_001205392	77040.0	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	3.41125096816744	3.47374906626023	3.13914013338616	3.30004667717503	3.07000877446763	2.97796363918108	3.00244655127766	3.13759349218577	-1.14343990899702	0.0479973547239364	0.226031800423853
Merged-chr15-62043381-4	chr15	62043277	62043477	+	906.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	4120.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	4.42738366629798	4.49213858073609	4.18763223649288	3.98870768116113	4.4733702543347	4.64596776516306	4.93412144660421	4.73564437852019	0.970938184328529	0.0128396287619746	0.0942857665994628
Merged-chr18-44812204-4	chr18	44812121	44812321	+	893.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085373)	promoter-TSS (NM_001085373)	-39.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	4.82711772636754	4.61515099493041	4.96334819405508	4.85045219413466	5.04469139625855	4.48938901311648	4.80484971373664	4.59016967069227	-0.110074376523085	0.758951338061119	0.905411837624275
Merged-chr5-102069442-4	chr5	102069334	102069534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	CpG	487.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.78851742455657	5.44418305400423	6.17708327447396	5.95021034552787	5.81952717929177	5.8894065213717	6.33299156174931	6.09632203161646	0.283102860928511	0.319028772846617	0.630887065134449
Merged-chr8-26685299-1	chr8	26685199	26685399	+	711.333313	f1_c57bl6.idr	Intergenic	MER58B|DNA|hAT-Charlie	139124.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	3.16951881874684	3.16830041255046	3.39642693096711	2.88826046420203	3.28890657752478	3.28285347918035	3.15852341025954	3.49403606965009	0.580179302228608	0.306877123173309	0.619243826908005
Merged-chr11-94716975-4	chr11	94716828	94717028	+	685.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger1|DNA|TcMar-Tigger	-12429.0	NM_001007584	432589.0	Mm.342314	NM_001007584	ENSMUSG00000056008	Gm11541	-	predicted gene 11541	protein-coding	3.68763795837847	3.59236817568188	3.52643348996668	3.53227701069998	3.67059346314758	3.75342857227227	3.56873183873512	3.73558400964378	0.31852606775447	0.494368182121566	0.76502017164665
Merged-chr6-142525029-4	chr6	142524923	142525123	+	868.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17066.0	NM_001316322	16832.0	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding	3.5579426263026	3.635748929738	3.87774498985786	3.68922150354684	3.78063241252616	3.95026119848493	3.95070329206429	3.67175920236472	0.432914130007665	0.344487268314458	0.652915970479425
Merged-chr1-152581305-4	chr1	152581215	152581415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	43902.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	7.9806100352885	8.14727879929726	7.71343602017931	7.56880911773856	7.93125950787914	8.08329896264406	7.75617548049847	7.69983956668303	0.0126820635963244	0.949656413007159	0.981984185023304
Merged-chr2-168981140-4	chr2	168981045	168981245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2876.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	7.18231191917378	7.00209724587753	7.11440178592124	7.12635708246505	7.45426879642703	7.07262740976333	7.12499780009323	7.40356475424258	0.238124619290668	0.218063616957544	0.525068508894185
Merged-chr9-83548329-4	chr9	83548222	83548422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172507)	promoter-TSS (NM_172507)	-16.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	7.11955324316772	7.3306910570138	7.20173852512844	6.96514662250301	7.30056372925733	7.42261263976394	7.41746237932749	7.25145031845693	0.265624523888446	0.158851526879901	0.446064231358103
Merged-chr4-154019670-4	chr4	154019566	154019766	+	933.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163722)	TTS (NM_001163722)	6378.0	NM_001163722	68859.0	Mm.477488	NM_001033144	ENSMUSG00000078350	Smim1	0610011H04Rik|1190007F08Rik|2700009I11Rik	small integral membrane protein 1	protein-coding	4.76389363423083	4.38854568483864	4.46743545091417	4.65483431487215	4.38440361858788	4.51015279874898	4.52741314757146	4.13274313198421	-0.41907818307687	0.271544908110264	0.583247666197459
Merged-chr13-4663508-2	chr13	4663408	4663608	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54344.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	3.18934232320318	3.02145519467537	3.01826998627249	2.89303053971756	2.99138411216173	3.06430003694375	3.00755371849088	3.0763995642239	0.0329231898137528	0.954341630657004	0.98373809489276
Merged-chr14-65150045-4	chr14	65149955	65150155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-51949.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	8.12677987674244	8.36038813739401	8.05681213873785	7.74347045393144	8.32757614127344	8.53023078831656	8.32895855189368	8.01078217409517	0.29002833112589	0.144648221470181	0.423797463707514
Merged-chr9-25167609-4	chr9	25167526	25167726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15845.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	5.96178007637707	6.15689879941983	5.81805355130769	5.8680557967352	6.23476001184711	6.43949042426413	5.95488714824966	6.16808427292438	0.39536008037664	0.108470976405996	0.363483160530424
Merged-chr4-142021870-4	chr4	142021769	142021969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131014, intron 1 of 1)	ORR1D2|LTR|ERVL-MaLR	3971.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	5.09286429832965	5.07009313906374	4.90817581164166	5.35647154009867	5.17688515680413	5.04771800627535	5.6162775704286	5.49986208841533	0.398534312900591	0.220939869187295	0.52902341133927
Merged-chr15-28024450-6	chr15	28024285	28024485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	CpG	1463.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	4.73678944597688	4.15712615566465	4.70214968436451	4.61810424231889	4.56663793710976	4.45821863832297	4.48777585689846	4.66259189686343	-0.0534459952119261	0.887592770539102	0.957799052224803
Merged-chr6-124507568-3	chr6	124507469	124507669	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181344, intron 5 of 5)	L1MB7|LINE|L1	-5052.0	NM_023143	50909.0	Mm.333375	NM_023143	ENSMUSG00000055172	C1ra	AI132558|C1r|mC1rA	complement component 1, r subcomponent A	protein-coding	3.94953766445312	4.04612741451567	4.04007184436933	3.09648394704312	3.80115198986314	3.87158587388555	3.62156540289824	3.94765120047456	-0.0741779509040267	0.89446106378465	0.960584583257403
Merged-chr5-147891949-4	chr5	147891827	147892027	+	801.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357002, intron 2 of 5)	(GGGTG)n|Simple_repeat|Simple_repeat	2888.0	NM_001357002	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	3.95056964990124	4.31659522171371	3.9511115134111	3.95352290944873	4.328416768655	4.49863146528347	4.18160006917898	4.28509362086686	0.69254440107125	0.0892742573596552	0.326077746808853
Merged-chr12-54862133-4	chr12	54862054	54862254	+	801.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007688, intron 1 of 3)	intron (NM_007688, intron 1 of 3)	723.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	4.41603230970079	4.61657543869074	4.33006123471684	4.59950280123805	4.33934861696727	4.54597677985932	4.21908534261496	4.08185498108766	-0.465131796051132	0.233492875466176	0.543165873024608
Merged-chr12-91778637-3	chr12	91778544	91778744	+	987.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	CpG	7792.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	3.95553425232037	4.05658929986968	4.56534129176108	4.18031954414702	4.63950499587716	4.57881423119218	4.50595586887346	4.52442119452305	0.836382280268728	0.0333429350900707	0.17951113960942
Merged-chr6-81965854-4	chr6	81965750	81965950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026490)	promoter-TSS (NM_026490)	99.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	6.0185648248776	6.10846844659128	6.55060717739515	6.19812529132866	5.62254922624237	5.90303681621997	6.29792986852591	6.160728475103	-0.338901283886987	0.217636483797554	0.524590155104168
Merged-chr7-16228316-2	chr7	16228197	16228397	+	751.666626	f0_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4-int|LTR|ERVK	-6265.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	3.45900823768128	3.54376445029363	3.45948782412873	3.62316723096398	3.24333834060786	3.33982679312652	3.21803695555723	3.22719472227677	-0.988889550548749	0.0597620004812379	0.257827505777562
Merged-chr15-25303228-4	chr15	25303100	25303300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110564.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	6.78104070174218	6.35250446896811	6.89955763058805	6.57278232151067	6.56051140201549	6.75087405129678	6.58822916933259	6.48651787862365	-0.0883427445518801	0.693933586877979	0.875656793802988
Merged-chr19-47865695-4	chr19	47865620	47865820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026619)	promoter-TSS (NM_026619)	-74.0	NM_026619	68214.0	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	8.75549311565801	8.85212227900378	8.83239020601992	8.71677919619469	8.47161213235397	8.55968768940254	8.75343999829076	8.4465340640855	-0.284079576950829	0.0623571501642929	0.264317155262691
Merged-chr9-7825055-4	chr9	7824940	7825140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007465, intron 4 of 7)	intron (NM_007465, intron 4 of 7)	11766.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	6.04112869649042	6.35837067375671	6.29619134372049	6.14087732303113	6.56529369875332	6.63381634812715	6.72236038771841	6.61162187898539	0.620613682695502	0.00399341611135826	0.040017931210808
Merged-chr13-32868404-2	chr13	32868277	32868477	+	827.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-17192.0	NM_025429	66222.0	Mm.20144	NM_025429	ENSMUSG00000044734	Serpinb1a	1190005M04Rik|AI325983|EI|EIA|ELANH2|LEI|M/NEI|MNEI|PI2	serine (or cysteine) peptidase inhibitor, clade B, member 1a	protein-coding	2.95716009380344	2.78333746397033	2.90579895341676	2.57463195659759	2.25734509113889	2.33246823644278	2.46215259069772	2.53989080088637	-2.49144564988787	0.00271123525184908	0.0295126187477238
Merged-chr13-34651568-4	chr13	34651461	34651661	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025831, intron 1 of 4)	intron (NM_025831, intron 1 of 4)	1120.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	5.58596792111835	5.03482433352948	5.75086065303863	5.70483032236608	4.94913292165818	5.09304432123348	5.48163662890373	5.58297298993228	-0.447065867967547	0.186411390971844	0.484379989602257
Merged-chr13-41248294-2	chr13	41248194	41248394	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1550.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	3.40505059785819	3.27365756358543	3.50426769009108	3.17258577390253	3.10834820713099	3.09372074158137	3.10858810108651	3.29662144084594	-0.699009277927328	0.211164624014852	0.515762969934016
Merged-chr15-100411256-2	chr15	100411145	100411345	+	994.916626	f0_c57.idr|f1_c57bl6.idr	intron (NM_001356952, intron 2 of 15)	intron (NM_001356952, intron 2 of 15)	11810.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	3.12348264130527	3.24353659991606	3.12381095306491	2.70105833240736	4.43043285981234	4.46600883838898	4.37581444786792	4.21262349077173	4.83166313308898	1.08832310804531e-16	2.29868695868122e-14
Merged-chr1-87651623-4	chr1	87651518	87651718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	MTC|LTR|ERVL-MaLR	31306.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	6.47602492680131	5.95564975959543	6.25225351135119	6.00973485074193	6.31346270966776	6.28859537288927	6.27554366625787	6.35654948245647	0.204313122475467	0.39291192512693	0.692205902019298
Merged-chr8-54671978-3	chr8	54671897	54672097	+	679.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172152, intron 9 of 29)	intron (NM_001172152, intron 9 of 29)	46681.0	NM_028220	244484.0	Mm.95281	NM_028220	ENSMUSG00000039375	Wdr17	3010002I12Rik|B230207L18Rik	WD repeat domain 17	protein-coding	2.80336209065689	3.29190366273393	2.94402123923623	3.20256229327808	3.13525704360729	3.18027393433275	3.06029419614913	3.18504104010739	0.223224010095658	0.71023289833314	0.884021744315996
Merged-chr9-78073550-3	chr9	78073448	78073648	+	638.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	21590.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	3.43901875775475	3.25635812152793	3.93848882610833	3.01693720031807	3.0195397678042	3.61387326705858	3.24960452416863	3.32181906963864	-0.475492658720579	0.443506385851456	0.729977364228012
Merged-chr8-83805859-2	chr8	83805759	83805959	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64548.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	3.03292351803881	3.11442295987972	3.03331480559552	2.99303120775951	3.07368116736842	2.88407409589587	2.90289360516589	2.77810078503786	-0.520007915132772	0.388556578596915	0.688981838974675
Merged-chr11-115199352-2	chr11	115199266	115199466	+	1000.0	f0_c57.idr|f1_balb.idr	intron (NM_001033393, intron 3 of 9)	intron (NM_001033393, intron 3 of 9)	11879.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	4.50116180885455	4.83515108568322	4.74916437486898	4.38919439260641	5.79378699458324	5.58948184638002	5.99712418067974	5.58820728546793	2.11348642630223	9.98860460063576e-12	8.99973274517282e-10
Merged-chr9-114898930-3	chr9	114898840	114899040	+	680.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175380)	TTS (NM_175380)	35047.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	3.43904204013677	3.26760490915659	3.38294108407001	3.39469843921106	3.42895849127224	3.49674291659023	3.58022844989007	3.49172369049411	0.426088363298161	0.390327263958172	0.690486475663661
Merged-chr15-38289153-4	chr15	38289056	38289256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	10744.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	7.46314912512616	7.1890371760238	7.36172773219428	7.05054392268843	7.17991975359831	7.04500199944848	7.07939850147436	7.13362537387644	-0.203721938200104	0.295823352592844	0.607719593315749
Merged-chr17-28515980-3	chr17	28515849	28516049	+	878.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14912.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	3.18402808160449	2.96580085920442	3.33589998905952	3.04503084676005	2.88059728533518	2.8474396522328	3.06074029848552	2.88228667087312	-0.917886972358331	0.131688692740017	0.404081107925235
Merged-chr1-13454755-4	chr1	13454664	13454864	+	925.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80681.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	4.64142133747528	4.24989922194559	4.51871423082119	4.77544738159868	4.76053039751922	4.88931100376517	4.54036843107629	4.7515463705748	0.354073186677969	0.337579524356923	0.64733890902776
Merged-chr10-20753076-3	chr10	20752976	20753176	+	938.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27998.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	3.2243571558312	3.84847694940381	3.29250743812061	3.69743590821815	3.65199079023445	3.64987190316055	3.57372576359607	3.5860889593654	0.200386123935331	0.709198317470387	0.883382805530322
Merged-chr5-117158785-4	chr5	117158686	117158886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	25198.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	7.80053754798132	8.13166868083323	8.09830826261674	8.07255004718136	8.13221276812119	8.13638330531741	7.94151055073058	7.89601760732497	-0.0027984943071528	0.986857917199521	0.995205005360357
Merged-chr9-5357047-3	chr9	5356960	5357160	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009808, intron 8 of 10)	intron (NM_009808, intron 8 of 10)	11584.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	4.30936909432716	3.29243988159208	4.15417420966105	4.04527211765711	3.84182840767224	3.83375219690727	4.13463834814418	3.65088231761358	-0.339874985965066	0.537867647970676	0.79126455418755
Merged-chr9-73091976-3	chr9	73091904	73092104	+	773.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301230, intron 6 of 6)	intron (NM_001301230, intron 6 of 6)	-10394.0	NM_025890	66991.0	Mm.471745	NM_025890	ENSMUSG00000092622	Khdc3	2410004A20Rik|AI467128|FILIA|OEEP48	KH domain containing 3, subcortical maternal complex member	protein-coding	2.97070377163678	2.98658040964484	3.03319773702097	3.02639976961173	2.97209941455346	3.14223328363608	3.08102516484605	3.20149198633657	0.375742696281554	0.505058721776591	0.77121840557206
Merged-chr11-95503819-3	chr11	95503803	95504003	+	881.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10662.0	NM_130858	104079.0	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	3.52930913437174	3.57286927519436	3.77077171774931	3.43644510579821	3.46213771648276	3.3450272595197	3.28680320011607	3.47367899942188	-0.604266741697286	0.239849158988114	0.550379550843514
Merged-chr1-93069502-4	chr1	93069377	93069577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294150, intron 9 of 46)	intron (NM_001294150, intron 9 of 46)	13003.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	6.64444269852152	6.93419483477359	6.81257197500546	6.97969913524038	7.15016860863867	6.59417376283558	7.04465385328866	7.06381658708138	0.181580996752756	0.402349946620908	0.69988558788989
Merged-chr5-139406237-4	chr5	139406135	139406335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177000)	promoter-TSS (NM_177000)	-152.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	5.47661413304952	5.30029742284701	6.19120534215174	6.30385712862793	5.53121623706655	5.40236369204216	5.26391340983199	5.14482200042428	-0.932754758751409	0.00756441833639894	0.0645261581984874
Merged-chr12-3983870-2	chr12	3983770	3983970	+	855.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082483, intron 6 of 22)	intron (NM_001082483, intron 6 of 22)	28925.0	NM_001278583	18976.0	Mm.277996	NM_008895	ENSMUSG00000020660	Pomc	ACTH|BE|Beta-LPH|Clip|Gamma-LPH|Npp|Pomc-1|Pomc1|alpha-MSH|alphaMSH|beta-MSH|gamma-MSH	pro-opiomelanocortin-alpha	protein-coding	3.18336860085555	3.08102825787688	3.35455874201737	3.10399144254487	3.17767590045463	3.29517438014838	3.48831219688099	3.29832628718451	0.520325139482815	0.334861992413888	0.645239354575747
Merged-chr17-74434769-4	chr17	74434646	74434846	+	903.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 7 of 8)	intron (NM_001033367, intron 7 of 8)	24362.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	3.49935832970492	3.8274785401236	3.61682858418389	3.25715232087081	3.96453517194229	3.84470999763287	3.54609942615017	3.91311662417238	0.82820362576638	0.099927493012726	0.346760642215582
Merged-chr11-101425038-4	chr11	101424936	101425136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172566)	promoter-TSS (NM_172566)	-49.0	NM_172566	217201.0	Mm.305941	NM_172566	ENSMUSG00000035007	Rundc1	AW125546|D930024B17	RUN domain containing 1	protein-coding	7.3643097766047	7.35355457890684	7.17250230066741	7.0569894957521	7.56230635281716	7.29056241928695	7.35832611590962	7.33029120717106	0.218555385711051	0.248994183440988	0.560207151982062
Merged-chr15-27926052-4	chr15	27925937	27926137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	99811.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	8.18936066268525	8.01045818506713	8.66171913555178	8.69249950778786	8.36001631047034	8.10202287397081	8.57048235276347	8.25701450237993	-0.116079280466334	0.581852649310362	0.816420227529328
Merged-chr3-103383356-4	chr3	103383261	103383461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104068.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	6.08886271818632	6.27065504413817	6.06820893132657	6.28748683881029	6.01716787810438	6.26666611226098	6.64633653025445	6.26583817679618	0.182468614559076	0.46308841179831	0.744554450168099
Merged-chr4-75275942-4	chr4	75275848	75276048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	2344.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	6.94034366464461	7.04316207998681	6.99352839589828	6.98903691241188	7.10221624626099	6.90308557926227	7.47072788257442	7.05063374799646	0.217217008540722	0.286177150288099	0.597775659712308
Merged-chr2-5605987-1	chr2	5605887	5606087	+	696.0	f0_balb.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	70059.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	3.47469015473152	3.4803294919736	3.27383548765159	3.22088687784251	2.65263619476509	3.00791657051132	2.95857279728857	3.03354047562352	-1.97233428192219	0.00260659239412206	0.0286274710725527
Merged-chr2-117303581-4	chr2	117303445	117303645	+	841.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 3 of 16)	intron (NM_011246, intron 3 of 16)	39332.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	3.80671313070881	3.5190381493517	3.53453665666416	3.55127432196247	4.14860375330928	3.76918628724165	3.92894475300925	3.59191119808724	0.835941197946617	0.0809738986164474	0.308744435912798
Merged-chr19-25006877-4	chr19	25006788	25006988	+	809.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 1 of 47)	intron (NM_028785, intron 1 of 47)	7359.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	3.64507028985185	3.36158258002711	3.64555687569946	4.10873069576093	3.94193868998167	3.64664075128555	3.68456487367743	3.74881166632711	0.0807856362755475	0.878261202708264	0.95446425902835
Merged-chr10-120141315-4	chr10	120141214	120141414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028679)	TTS (NM_028679)	-28349.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	5.80221608576725	5.97949889252	5.87589426179903	6.20759401503939	6.18877319525822	5.95402380905115	6.02114173059554	5.72260992925847	-0.00290146802725619	0.991141596291734	0.996644360218819
Merged-chr12-112627638-3	chr12	112627533	112627733	+	772.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	7586.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	3.59952581202594	3.36678119755032	3.34888661390179	3.33928110023382	3.18977201747657	3.21555926100605	3.09556667167972	3.34706301388002	-0.738213961189446	0.17363680021211	0.467729859305849
Merged-chr14-67008747-7	chr14	67008679	67008879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009761)	promoter-TSS (NM_009761)	98.0	NM_009761	12177.0	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	7.54783634950347	7.67020560716077	7.5219015373584	7.13772436989294	7.5128110259163	7.83774422719927	7.44768138871016	7.67979681573763	0.199644034182642	0.325037699248994	0.636544830100813
Merged-chr4-145361301-4	chr4	145361205	145361405	+	823.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_1B-LTR_MM|LTR|ERVK	-46158.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	3.4568672450222	3.50469338137179	3.24947798289324	3.50056202555886	4.06882690728654	3.96912903636941	3.82923757581497	4.14162763234048	1.69021560578829	0.000489198587069874	0.00759447464101343
Merged-chr9-109931658-4	chr9	109931559	109931759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008633)	promoter-TSS (NM_008633)	-115.0	NM_001205331	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	8.56381921985459	8.93586207659962	8.85674786749262	8.85773257134279	8.81287732057088	8.91239388200681	9.07492198166811	8.79565303573703	0.110773922118759	0.488055843846712	0.761126159857708
Merged-chr2-150786703-4	chr2	150786621	150786821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153781)	promoter-TSS (NM_153781)	-75.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	7.16657231846101	7.20276257199946	7.51244180932399	7.50326523719357	7.37470530118412	7.22252413180833	7.4577382582832	7.24176967259471	-0.0443320167823289	0.817315321603566	0.929799374703047
Merged-chr12-85489392-4	chr12	85489265	85489465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TGG)n|Simple_repeat|Simple_repeat	15475.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	6.71843463740313	6.76714378853244	6.78715369260617	6.72585541792987	6.12866106776291	6.03927093119148	6.44191421410974	6.16698400792349	-0.805951255831344	0.000219831467992024	0.0039324915959297
Merged-chr11-31877786-3	chr11	31877662	31877862	+	850.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026252, intron 1 of 9)	intron (NM_026252, intron 1 of 9)	6822.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	2.97914328937892	3.49957888896369	2.97945558709036	2.57040411839744	3.8330029415017	3.59410662122923	3.40582536942178	3.18458304401588	1.66172873491902	0.0154699018814137	0.107187009249211
Merged-chr5-147894100-4	chr5	147893940	147894140	+	903.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027872, exon 2 of 6)	5' UTR (NM_027872, exon 2 of 6)	775.0	NM_001357002	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	3.61143700613988	3.48001203265041	3.5582491246589	3.73021124427652	3.53823788167941	3.67371853253978	3.48945714136927	3.71062663603744	-0.0137428818418896	0.977305722092525	0.991888117862217
Merged-chr6-136693501-1	chr6	136693401	136693601	+	847.0	f0_balb.idr	Intergenic	Intergenic	-31608.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	4.02355274535564	3.90342519183204	4.4941761742722	4.31522589377489	3.61039964524736	3.94109674073637	3.68927230971054	3.87107273558588	-1.19681271677374	0.010702641023755	0.0829851073453001
Merged-chr4-59035268-4	chr4	59035290	59035490	+	923.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025277, intron 1 of 2)	CpG	234.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	4.1673908651693	4.48300640612149	4.7022743348086	4.22902880472084	3.6995531890142	3.9719283415169	4.05235089023819	4.342196509863	-0.954981631887514	0.0350189277547549	0.185327638268706
Merged-chr19-10199002-4	chr19	10198899	10199099	+	755.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001271615)	TTS (NM_001271615)	4944.0	NM_001271615	14156.0	Mm.2952	NM_007999	ENSMUSG00000024742	Fen1	AW538437|FEN-1	flap structure specific endonuclease 1	protein-coding	4.45323714996694	4.11106163884283	4.28967880886784	3.84279124691016	4.50256537097037	4.41803223380429	4.18050109082324	4.24243014101057	0.419450461738991	0.320408851627467	0.632298695555504
Merged-chr4-135315442-4	chr4	135315351	135315551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	37763.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	6.50091092610173	6.51844738524241	7.17137646345588	7.08355335965479	6.63699214792299	6.44988929451473	6.84598494674629	6.93977299460285	-0.185660015268296	0.464090342693173	0.745211298509957
Merged-chr10-5807102-3	chr10	5807017	5807217	+	835.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1652.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	3.15633932208186	3.04938315218047	3.09765617535706	3.02489858470259	3.27354380269191	3.00948393230464	3.20069925313592	3.26522457061181	0.463990958361581	0.400034640932865	0.698016583884129
Merged-chr1-171917678-4	chr1	171917595	171917795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030710, exon 1 of 8)	5' UTR (NM_030710, exon 1 of 8)	233.0	NM_001347186	30925.0	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	5.79806257372898	5.57165630745076	6.25120306351075	6.26775959941704	5.68638253188702	5.92547806720065	5.58490779274839	6.10062049420743	-0.287259407454515	0.331718191122008	0.642821952146076
Merged-chr15-59202517-4	chr15	59202411	59202611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104437.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	7.44036145085901	7.66892225545407	7.66555948086575	7.69586254827581	7.39356957495897	7.55878710771103	7.64430435015483	7.44625564662273	-0.154136166916564	0.38099768017764	0.683305836156047
Merged-chr10-3972417-3	chr10	3972305	3972505	+	651.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172308)	promoter-TSS (NM_172308)	-670.0	NM_001170786	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	3.30918044636138	3.38321320026506	3.47184554914269	3.48092196810075	3.27122425080652	3.01632739184947	3.50650603275956	3.2490287422236	-0.510864852147311	0.352312876676017	0.659477153761169
Merged-chr5-53826128-4	chr5	53826035	53826235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144517, intron 1 of 20)	intron (NM_144517, intron 1 of 20)	16508.0	NM_144517	67249.0	Mm.28823	NM_144517	ENSMUSG00000039178	Tbc1d19	2810453K03Rik	TBC1 domain family, member 19	protein-coding	5.45987512431586	5.09454711494893	5.30723760326991	5.59455145976399	5.49015841283691	5.41954805077969	6.01942201094034	5.91307706041194	0.583882344940643	0.0592352498797596	0.256481893739973
Merged-chr13-81761936-3	chr13	81761825	81762025	+	670.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21322.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	3.77937444596472	3.73055801857919	3.88061907174476	4.05513088101621	3.82758747413342	3.89874864175343	3.76483920233612	3.77778973540242	-0.18159252214049	0.687389223013594	0.872252468458984
Merged-chr6-71963825-4	chr6	71963725	71963925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009088, exon 22 of 34)	exon (NM_009088, exon 22 of 34)	54772.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	6.91255585708545	7.29163182518448	6.83121714297595	6.36650157154714	7.12335763121657	7.19266789446358	7.1727957454933	6.84049477610885	0.286914700529471	0.250966416699403	0.562198310563307
Merged-chr15-67714425-4	chr15	67714332	67714532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	487663.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	6.3615802060972	6.60314553247655	6.24498076191046	5.78997114572055	5.823659089149	6.05636611488647	5.46999800255194	5.00321408920392	-0.998178748282673	0.00353152646730035	0.0363142057062951
Merged-chr10-117300570-3	chr10	117300464	117300664	+	816.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7696.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	3.33983478554941	3.59420301590253	3.14464281950255	3.62180675778296	3.28805546151503	3.67954601052409	3.38690966635534	3.61074500901889	0.155216844300934	0.776965579551569	0.913015118902433
Merged-chr11-116666787-4	chr11	116666706	116666906	+	917.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163318, intron 4 of 4)	intron (NM_001163318, intron 4 of 4)	-4854.0	NR_027821	66293.0	Mm.432051	NM_025472	ENSMUSG00000020812	1810032O08Rik	-	RIKEN cDNA 1810032O08 gene	ncRNA	5.20802659527102	5.26355726951521	4.46728062879683	4.36266834950036	5.27838236118931	4.65131744416537	4.83065087435994	5.05630266853844	0.187300434774307	0.654487249405817	0.855635636382923
Merged-chr11-50213185-4	chr11	50213083	50213283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2363.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	7.60386187715174	7.90371193914188	7.41115826881218	7.1521064996701	7.66416136342947	7.95015495431432	7.31314303538407	7.18846236872006	0.0286053242008671	0.907383197464779	0.96568164776089
Merged-chr11-90241192-4	chr11	90241078	90241278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER67B|LTR|ERV1	-8298.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	6.54874392271032	6.4997080599347	7.20851146559198	7.05591106478371	5.95916270281512	6.17585803852562	6.3452297608589	6.19614371917102	-1.02574147571772	7.50009359915645e-05	0.00158972317475975
Merged-chr9-100435396-4	chr9	100435342	100435542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51031.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	7.09519407861857	7.65615048882556	7.1859522294151	6.69808456331021	6.94844698012155	7.15186080096972	6.76185224862846	6.47583705582757	-0.471877025289931	0.0775534658415734	0.301171812163094
Merged-chr5-90785981-4	chr5	90785865	90786065	+	920.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_203320)	promoter-TSS (NM_203320)	-136.0	NM_203320	330122.0	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	4.60193369905241	4.66072017969342	4.75038004103428	4.71503028627591	4.38738799610387	4.61008033156302	4.4158532358384	4.43275069250267	-0.506946552206497	0.152094897132752	0.435968213716661
Merged-chr1-195018358-3	chr1	195018247	195018447	+	964.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015566, intron 1 of 7)	intron (NR_015566, intron 1 of 7)	948.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	3.65167067667968	3.76932691781845	4.18612682684281	4.20157663091241	4.03349882009015	3.64376075372154	3.57837649696018	4.14319363310513	-0.28757842132867	0.571235392145857	0.810459925004484
Merged-chr16-91884357-4	chr16	91884267	91884467	+	827.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	47263.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	3.38487220153132	3.87154546101447	3.96615919780662	3.55683880593829	3.73856669521775	3.5657445126355	3.76770603123147	3.73163999719781	-0.0142983720587706	0.977005755042073	0.99183188530471
Merged-chr1-44119699-8	chr1	44119592	44119792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023645)	promoter-TSS (NM_023645)	164.0	NM_001357048	246229.0	Mm.386883	NM_144558	ENSMUSG00000041684	Bivm	AI854267	basic, immunoglobulin-like variable motif containing	protein-coding	5.09761093363096	4.86684263738883	5.31097055785712	4.72897685693678	4.86307053529675	5.30493947428119	5.13731139057012	5.43944701212096	0.364603125035793	0.287613043674979	0.599473172349672
Merged-chr1-92640644-4	chr1	92640555	92640755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163425, intron 1 of 2)	intron (NM_001163425, intron 1 of 2)	1293.0	NR_028108	66915.0	Mm.30179	NM_001163425	ENSMUSG00000073616	Cops9	1110002M09Rik|Myeov2	COP9 signalosome subunit 9	protein-coding	5.54912706187791	5.58180845781456	5.92121753335908	5.45819579562143	5.44087343264345	5.69750430351375	5.25469238242245	5.49106896747607	-0.259672974927437	0.366518635045067	0.670912432142801
Merged-chr19-46762318-2	chr19	46762218	46762418	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_033569, exon 1 of 8)	exon (NM_033569, exon 1 of 8)	709.0	NM_001102471	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	2.82916872490332	3.08024347022417	2.82944251136412	2.942659417134	2.96675314335439	3.13985898799506	3.38579355945071	3.20050638101383	1.0082699528895	0.0889942862534926	0.325515123393492
Merged-chr1-74284892-4	chr1	74284776	74284976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190444)	promoter-TSS (NM_001190444)	-138.0	NM_146110	227290.0	Mm.379371	NM_146110	ENSMUSG00000006299	Aamp	AU040907|Aamp-rs	angio-associated migratory protein	protein-coding	9.40045546308544	9.61699158599024	9.41544113607613	9.42990235515704	9.40431539263932	9.70247764421287	9.58563667066248	9.34317762351897	0.056737575210159	0.707720490045664	0.882561350449566
Merged-chr16-33685457-3	chr16	33685372	33685572	+	847.3999630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 1 of 14)	intron (NM_175256, intron 1 of 14)	1006.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	3.27092065674489	3.46756118264029	3.38137845892199	3.44628009400755	3.23607197268064	3.12652912434037	3.20135081200575	3.14954848114857	-0.810160748094723	0.13440035045243	0.408039349321968
Merged-chr10-127618593-7	chr10	127618471	127618671	+	928.535706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	2577.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	3.47841720540432	3.52511650137285	3.86445579819258	3.51221320418903	3.74098912589067	3.71985065464931	4.06328164072289	4.03941286446501	0.891569675581307	0.0598853936596566	0.25815058353323
Merged-chr7-144895985-3	chr7	144895870	144896070	+	952.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008003)	promoter-TSS (NM_008003)	-562.0	NM_008003	14170.0	Mm.3904	NM_008003	ENSMUSG00000031073	Fgf15	FGF19	fibroblast growth factor 15	protein-coding	4.69999891356889	4.7585145706659	4.52181163817974	4.46531246202614	4.43078819497562	4.07589684524234	3.81301117514629	4.16722937252052	-1.09289790126841	0.0108520251827704	0.0837420100264979
Merged-chr6-87207853-4	chr6	87207774	87207974	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054041, intron 13 of 17)	intron (NM_054041, intron 13 of 17)	103128.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	5.44570872225989	5.43780701476364	5.08981239684158	5.62303781965514	5.61390047952212	5.43830389254276	5.94152026721421	5.44285838900322	0.346297665302867	0.251784999112356	0.563040416191876
Merged-chr7-143464079-4	chr7	143463963	143464163	+	914.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3013.0	NM_001161624	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	4.02312141840538	4.26860098443964	3.56167387058215	3.98334782397749	4.29196122228163	3.87455665360344	4.18608862244541	4.2441497660021	0.45920755453775	0.31962071105368	0.631524558708573
Merged-chr10-117862090-2	chr10	117861977	117862177	+	870.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-16103.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	2.66016590091532	2.65257393560638	2.58551130547634	2.59581896776035	3.11475996216228	3.03576725163811	2.85287433538386	3.19157009342677	1.98879938375683	0.00152847628679091	0.0189605112613263
Merged-chr3-95672987-2	chr3	95672887	95673087	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14266.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	3.93296974582512	3.64523572224983	3.43214406192938	3.22949603671153	3.76742537319311	3.66703048452742	3.4787962466938	3.54728328452304	0.144746185790621	0.785369458424772	0.916479414030825
Merged-chr4-19873765-4	chr4	19873701	19873901	+	951.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48765.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	3.88283982526511	4.64448549636029	4.29110483104483	4.26307368811787	4.55600361874614	4.46294428303876	3.80873036627802	4.15004620270416	-0.0413713136308995	0.92999431825452	0.974727857709636
Merged-chr19-5151510-4	chr19	5151494	5151694	+	888.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153129, intron 10 of 23)	intron (NM_153129, intron 10 of 23)	-33186.0	NM_008451	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	4.37665249393314	4.39200874622343	3.84111916573716	4.33013059837723	3.69793821194185	3.84665282125393	3.58726457491974	4.0434310976774	-1.25310232934974	0.00782009080987362	0.0661076298997618
Merged-chr11-9530634-3	chr11	9530521	9530721	+	753.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 45 of 61)	CT-rich|Low_complexity|Low_complexity	338679.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	3.64491529834632	3.50720022736128	3.69516545023421	3.93612985824861	3.75449704238246	3.5388069914244	3.35182943822285	3.15849215214686	-0.746181782854102	0.178483659736673	0.474282728191057
Merged-chr8-70546619-4	chr8	70546592	70546792	+	995.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	7017.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	4.26567481273103	4.86914004705679	4.70190902945052	4.78259233083683	4.51783524862882	4.67672868483147	4.34699887555601	4.73515593827112	-0.236472891130283	0.532618899845599	0.788200754532765
Merged-chr13-60719948-3	chr13	60719842	60720042	+	752.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 8 of 26)	intron (NM_134062, intron 8 of 26)	66422.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	3.48250272596408	3.20688184489631	3.20966776432308	3.8238287861337	3.06303223896632	3.19215864202093	3.07240806826557	3.2080807482171	-1.26601391122451	0.0336639709728528	0.180774635222685
Merged-chr10-127059966-8	chr10	127059825	127060025	+	837.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033262, exon 1 of 4)	5' UTR (NM_001033262, exon 1 of 4)	259.0	NM_001033262	216438.0	Mm.37892	NM_001033262	ENSMUSG00000040502	March9	AI608492|BC019560	membrane-associated ring finger (C3HC4) 9	protein-coding	3.26707221705172	3.10176322683293	2.85893419676452	3.36741006835873	3.19908270818803	3.60019579472183	3.36616016863899	3.48129068760839	0.870476652388295	0.144616333584946	0.423792862701014
Merged-chr15-100125597-3	chr15	100125493	100125693	+	940.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 2 of 37)	intron (NM_001159361, intron 2 of 37)	-28803.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	3.87860483872026	3.55135357698571	3.63949180268021	3.93000182216492	3.5032602595321	3.38973247360879	3.57175278162829	3.63745695823751	-0.758278053956318	0.127025447391066	0.396437588841899
Merged-chr15-102243986-4	chr15	102243873	102244073	+	882.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011244, intron 3 of 9)	intron (NM_011244, intron 3 of 9)	2527.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	3.78593882359059	5.12653692587568	4.56323237574608	2.95796249828529	4.88615544817381	4.95479310025833	4.45971034038946	4.09323263330559	0.500962750953679	0.639608245945921	0.847607151813091
Merged-chr12-3856230-4	chr12	3856124	3856324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 3 of 22)	intron (NM_007872, intron 3 of 22)	6020.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	7.11975235471235	6.98846438743287	7.53137887464578	7.51824258448185	6.37025259009951	6.8409302168388	6.56174036431112	6.76650084249256	-0.944958816941532	4.42350876511968e-05	0.00101600816519023
Merged-chr2-93199713-4	chr2	93199604	93199804	+	759.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025246, intron 7 of 7)	intron (NM_001025246, intron 7 of 7)	12156.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	3.2727472514973	2.99642622794016	3.38517326292076	3.25460314679342	3.17150118558482	3.26238022061411	3.47297747936967	3.48601902319198	0.427082383313231	0.435634694713258	0.724744835370587
Merged-chr15-64382674-5	chr15	64382597	64382797	+	773.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 1 of 28)	CpG	222.0	NM_001276461	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	3.85212816151498	3.79993786169255	4.04737037886932	4.28020913125836	3.8406077051387	3.80337093604196	3.78424682613818	4.17326085474651	-0.313885466918878	0.498964105039846	0.768041305147511
Merged-chr3-65665778-4	chr3	65665683	65665883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166659)	promoter-TSS (NM_001166659)	-445.0	NM_001037923	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	5.74886248041353	5.81560287807392	5.64300407489772	6.10869210926237	6.09683061652085	5.79269225055411	5.95270301279369	6.0412602695744	0.189167638387119	0.471519383381865	0.749935186197728
Merged-chr19-29468842-4	chr19	29468755	29468955	+	976.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	intron (NM_021396, intron 5 of 5)	53132.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	5.76733160562802	6.13476464848309	5.56412055894237	5.15982889777234	5.98810896126047	5.89509524075766	5.47975814930427	5.17651465350274	-0.0308295834185661	0.930327192004852	0.974847913459316
Merged-chr13-41359021-4	chr13	41358921	41359121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017464)	promoter-TSS (NM_017464)	-20.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	7.0863142746651	7.03726874243733	6.80035714163922	7.22699022576793	7.04066442074482	6.94813313278583	7.10867529947228	6.81010525805452	-0.102313454850817	0.614055252001101	0.833609107549057
Merged-chr10-41678952-4	chr10	41678849	41679049	+	864.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 7 of 47)	intron (NM_001358562, intron 7 of 47)	37514.0	NM_001358562	75973.0	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	4.07408133536185	4.02516533429058	3.98160369761675	3.92599125817968	4.19046761369243	3.89152982020213	4.056868706325	3.77135783131477	0.001097802731828	0.997977859715303	0.999086724003875
Merged-chr1-177188938-3	chr1	177188836	177189036	+	888.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	59831.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	3.65646219593853	3.97537935248925	3.87888297125324	4.09648839756399	3.78903636543569	3.77643598548073	4.45479650482615	3.65505870296957	0.112452152087778	0.822760903092084	0.932185203682946
Merged-chr4-155703631-2	chr4	155703531	155703731	+	778.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-1184.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	2.93644020783019	3.05151678759541	2.80108184474047	2.83164073502552	3.06972559468397	3.17062695463636	2.98905406317598	3.22296595147956	0.86981872219347	0.133001310076958	0.406105758986762
Merged-chr1-24468601-4	chr1	24468490	24468690	+	741.924988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 11 of 50)	intron (NM_007733, intron 11 of 50)	118847.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	3.98966054996461	4.22045769888633	3.99023431214546	3.79089315250988	4.1846261592277	4.06145707828795	4.35921148343786	4.03753797460915	0.451453375870622	0.287562012800761	0.599400507972342
Merged-chr13-91807549-6	chr13	91807427	91807627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145453, intron 1 of 5)	CpG	169.0	NM_145453	69085.0	Mm.52356	NM_145453	ENSMUSG00000021621	Zcchc9	1810019C21Rik	zinc finger, CCHC domain containing 9	protein-coding	6.5501893924035	6.28716566992532	7.44852224753571	6.88245271116001	6.37455821905023	6.69518950285832	6.6600045604495	6.76231771660996	-0.339844208251875	0.234718958818519	0.544594196810202
Merged-chr9-98563658-4	chr9	98563564	98563764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015827)	promoter-TSS (NM_015827)	-53.0	NR_029444	75881.0	Mm.483402	NM_175227	ENSMUSG00000051074	4930579K19Rik	-	RIKEN cDNA 4930579K19 gene	ncRNA	8.72207880111543	8.58418751346069	8.94494200425975	8.71752147689027	8.66425772823152	8.72780421195693	8.76210023394367	8.91788854137878	0.0289879885818133	0.853498747675123	0.944808512609138
Merged-chr3-89091008-4	chr3	89090935	89091135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028188, intron 2 of 10)	CpG	-1004.0	NM_001083808	72296.0	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	4.92756138597399	4.89785611100142	5.33256592655469	5.19169733007922	4.87528993852451	5.10313589987355	5.07451488056817	4.84976478226971	-0.250603707701576	0.438295968001411	0.726330030804391
Merged-chr7-130671482-3	chr7	130671387	130671587	+	862.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_206856, intron 3 of 20)	intron (NM_206856, intron 3 of 20)	-21069.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	3.96037596561064	4.28975930849421	4.49610050504648	4.0767419944333	3.70921730192904	3.73269752329598	3.78319593276669	4.23364080758951	-0.906729799559228	0.0537110234425509	0.241923158384611
Merged-chr4-129377802-3	chr4	129377729	129377929	+	901.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028603, exon 1 of 5)	5' UTR (NM_028603, exon 1 of 5)	199.0	NM_028603	73680.0	Mm.32997	NM_028603	ENSMUSG00000028807	Zbtb8a	2410081M15Rik|AI480941	zinc finger and BTB domain containing 8a	protein-coding	3.4351996112178	3.57487634508579	3.68794472456706	3.47306427656006	3.16168589347596	3.55106649978697	3.36600170100869	3.18974970210192	-0.786278899527328	0.14045855350725	0.416760118470072
Merged-chr18-83984196-4	chr18	83984088	83984288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	102374.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	5.86664309876838	5.74555779289642	5.86767779005792	5.86616611651883	6.45779311921885	6.07121736757894	6.66721906825968	6.60279175017384	0.967457593910818	7.20376846747268e-05	0.00153934865129462
Merged-chr13-74026484-4	chr13	74026361	74026561	+	866.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182839, intron 2 of 3)	intron (NM_182839, intron 2 of 3)	17042.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	4.05511543941818	3.96956945040966	3.91270222302872	3.93320898184935	4.06906156563211	3.92770289793294	4.12397544385627	3.69168845971975	0.00802896768155414	0.985292736887717	0.994655316611083
Merged-chr4-35373082-1	chr4	35372982	35373182	+	546.0	f1_c57bl6.idr	Intergenic	Intergenic	-147202.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	3.60325017512069	3.3723232123236	3.18592167121552	3.47702567878452	3.61871178512876	3.7210855318521	3.53732948825808	3.60167207800457	0.644533558966388	0.198862548050658	0.500526867107314
Merged-chr7-128138562-3	chr7	128138465	128138665	+	804.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021334, intron 14 of 29)	MTEa|LTR|ERVL-MaLR	8997.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	4.00111751482726	3.45103626148162	3.63413366240508	3.92145688802598	3.36441181142286	3.697180016045	3.50963087620777	3.4617284460052	-0.848552784956332	0.0999293462358661	0.346760642215582
Merged-chr7-99531958-7	chr7	99531802	99532002	+	871.609497	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-3584.0	NM_178220	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	4.27674201609269	4.01795365188929	4.27740949991644	3.92888122330696	4.27435608571897	4.26510770691582	4.25810185865524	4.58361784893603	0.576660052605599	0.154131979854157	0.439312865656471
Merged-chr11-6444215-2	chr11	6444109	6444309	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_029938, intron 1 of 4)	CpG	234.0	NM_029938	77605.0	Mm.27624	NM_029938	ENSMUSG00000041126	H2afv	C530002L11Rik|H2a.z-2|H2av|Tg(Wnt1-cre)11Rth|Wnt1-Cre|Wnt1::Cre|Wnt1cre	H2A histone family, member V	protein-coding	7.27622719624297	7.57969814023122	7.56057801100556	7.14256235926113	7.55032661148508	7.54958000093844	7.54065428045172	7.40721400032039	0.16082613438499	0.402311883093289	0.69987042232112
Merged-chr2-66192568-3	chr2	66192430	66192630	+	836.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001047604, intron 25 of 28)	intron (NM_001047604, intron 25 of 28)	64087.0	NM_001047604	73668.0	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	3.52178419035251	3.44476308165347	3.46595820696568	3.66875531930828	3.41454094584719	3.6377060253882	3.61298588438519	3.62587655893203	0.102929328233761	0.834208297068491	0.936725810109611
Merged-chr7-12978189-4	chr7	12978090	12978290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001168561, exon 1 of 5)	5' UTR (NM_001168561, exon 1 of 5)	342.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	9.36401959407639	9.41687046965663	9.51955518230793	9.65701942947179	9.28741433403544	9.16566015357227	9.65275102053602	9.11136195742905	-0.213082202443336	0.215993974838884	0.52240905990201
Merged-chr3-9250345-2	chr3	9250245	9250445	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177660)	promoter-TSS (NM_177660)	-222.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	4.49330110031403	4.54489559081151	4.75766448360628	4.37544753854668	4.84420705320524	4.3426238482422	4.34280637111947	4.49114692038055	-0.00571669899292998	0.988237288824015	0.995397313897641
Merged-chr15-27726518-1	chr15	27726418	27726618	+	587.5	f0_balb.idr	Intergenic	Intergenic	-44976.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	3.45920506590192	3.2324291508575	3.30304441205416	3.18967113303531	3.27331869262023	3.09943000414619	3.04979903020286	3.40762741721284	-0.281954819777117	0.611583132423208	0.832381272376602
Merged-chr4-40113345-3	chr4	40113279	40113479	+	645.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29886.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	3.48284301592214	3.39948285719803	3.4285588478731	3.4018461653149	3.15427972375657	3.15287999640904	3.709293614337	3.63257551338141	0.0300082985876822	0.956427252907641	0.984663539759604
Merged-chr15-90305178-4	chr15	90305072	90305272	+	954.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48538.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	5.09534021420408	5.09901864831959	5.4571501725145	5.98594756248634	5.03054674949965	4.83097046532642	5.37634991713356	4.94584174818281	-0.765580266882556	0.0387241439153067	0.197573352429762
Merged-chr9-61054649-4	chr9	61054565	61054765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37596.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	5.72442572496946	5.45656646808547	6.02272124660668	5.70329612759553	5.94527762408041	5.61811074482223	6.34214566216259	5.91227847232453	0.39581052466378	0.164727604001586	0.454956779653457
Merged-chr1-93801990-4	chr1	93801910	93802110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023136)	promoter-TSS (NM_023136)	-76.0	NM_001105667	21915.0	Mm.250332	NM_023136	ENSMUSG00000026281	Dtymk	AU044245|CDC8|D10Ertd203e|TMPK|TYPK|Tmk|mtmk	deoxythymidylate kinase	protein-coding	8.21081676633824	8.41388254085527	8.40117229030067	8.3441749099793	8.37695710502763	8.30909072012834	8.231949556117	8.22460801436204	-0.0713806408145828	0.639596070277181	0.847607151813091
Merged-chr15-100028318-3	chr15	100028221	100028421	+	888.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10343.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	3.39810834568411	3.53457789573077	3.28481982716241	3.54756011724124	3.47267152085776	3.13075885471	3.33074766638361	3.34121572154695	-0.428806080426055	0.423702719025642	0.715570066410379
Merged-chr12-32656267-4	chr12	32656165	32656365	+	905.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-164070.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	4.26445242089357	4.00695151655067	4.02559981720694	4.10835663062009	4.26323940304578	4.03952739327395	4.48172386544647	4.53598909038278	0.59198147242763	0.144870900098719	0.424036712956412
Merged-chr6-72900510-2	chr6	72900410	72900610	+	991.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019715)	promoter-TSS (NM_019715)	-531.0	NM_019715	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	4.46587510080483	4.38794563569342	4.33464441648096	4.56332891900446	4.46915682853545	4.50916843862196	4.36079778321423	4.72647777546066	0.158814090711859	0.667062926491243	0.86221345902729
Merged-chr15-27613007-4	chr15	27612913	27613113	+	856.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 4 of 6)	intron (NM_001013792, intron 4 of 6)	17680.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	4.1963895470879	4.43372135243703	3.94916236114897	4.42371854931597	4.02798458092618	4.36798234798001	3.87858807934431	4.14858472389781	-0.411297128481565	0.341869594866284	0.650848825638901
Merged-chr10-80988227-4	chr10	80988114	80988314	+	992.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	13151.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	5.11427433540715	5.59507607126059	4.93947001544464	5.02162672405789	5.23912271859828	5.03996238809601	5.0233154977168	5.04431774045114	-0.180374941317546	0.586735458829238	0.818855440601026
Merged-chr11-110986281-4	chr11	110986175	110986375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010604, intron 1 of 1)	intron (NM_010604, intron 1 of 1)	-11212.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	4.99989412940588	5.5623307502614	5.3754050191972	5.70085597120326	5.38683102179535	5.57853648869678	5.37766643949182	5.31122310997565	-0.0719168366873828	0.815930533051281	0.929114885045365
Merged-chr11-76900215-4	chr11	76900092	76900292	+	906.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4353.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	4.64257827828	4.67037217403132	4.85877253792618	4.77006068216183	4.55443121207676	4.41377240917091	4.41154981308028	4.82207002000936	-0.383819041457591	0.282350260066577	0.594517682403819
Merged-chr1-131136166-4	chr1	131136074	131136274	+	859.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145508, intron 2 of 2)	intron (NM_145508, intron 2 of 2)	2060.0	NM_145508	226419.0	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	4.2439618376696	3.83942050692815	3.7107320581252	3.94199343888569	3.78811072819751	3.36995449726614	3.94366329929998	3.70870642697622	-0.651083871481703	0.194159515962264	0.494598818505403
Merged-chr10-67996420-2	chr10	67996320	67996520	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359318, intron 2 of 11)	intron (NM_001359318, intron 2 of 11)	16850.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	2.78117303678273	2.8145883609981	2.6396840465041	2.89302932258432	2.98421334185978	2.95407755108001	3.06780260894397	3.02445176807459	0.927621531795227	0.13005571949946	0.401487875155012
Merged-chr8-70806716-4	chr8	70806621	70806821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1728.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	7.22076182779299	7.01053966512641	7.35997630872261	7.23942198971787	6.76862465405826	6.67313752509034	6.6492915338208	6.88477508557159	-0.644694447556787	0.00112074449988873	0.0147319432608642
Merged-chr12-32135212-4	chr12	32135106	32135306	+	846.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73132.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	3.97208940035761	4.01747476095319	3.85341569114072	4.5987493468888	4.71468167251009	4.69378220859385	4.21310767218141	4.40452458294247	0.829641059551295	0.0789986730413611	0.304143905332072
Merged-chr17-79355032-4	chr17	79354946	79355146	+	952.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026514)	promoter-TSS (NM_026514)	45.0	NM_026514	260409.0	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	4.14591912591961	4.21266895866386	4.48056953033066	4.45256035127922	4.52233170415994	4.73383746376524	4.65298223201644	4.80885848118195	0.75287587385771	0.0433441813139182	0.211778932025218
Merged-chr8-36532881-4	chr8	36532736	36532936	+	926.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43645.0	NM_176952	319582.0	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L|Trmt9b	RIKEN cDNA 6430573F11 gene	protein-coding	4.54358483374759	4.72574428237381	5.48974104480234	4.86926644238536	4.23225979449569	4.58733449009882	4.72425199702683	4.35336545701332	-1.00119124874013	0.0156210577307008	0.107950608564422
Merged-chr7-126884872-4	chr7	126884762	126884962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001163775, exon 1 of 16)	5' UTR (NM_001163775, exon 1 of 16)	105.0	NM_001163775	381921.0	Mm.259634	NM_001163774	ENSMUSG00000059981	Taok2	1110033K02Rik|B230344N16|MAP3K17|PSK|PSK1|TAO1|TAO2|mKIAA0881	TAO kinase 2	protein-coding	8.23072200540754	8.62698149449981	7.92900329457308	8.0949544750707	8.14000668174525	8.51095672623374	8.25586095562316	8.16060042380517	0.0324399080617649	0.871928125430797	0.95183223179801
Merged-chr2-165987141-1	chr2	165987041	165987241	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-5496.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	3.43992056822892	3.82345908665212	3.50704055441345	3.2802592315075	4.16215876064554	4.33145183638556	3.67500617832865	4.12049399406386	1.65721975542149	0.000840014016891113	0.0117008527804878
Merged-chr10-21622272-4	chr10	21622172	21622372	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027968, exon 3 of 3)	non-coding (NR_027968, exon 3 of 3)	29127.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	5.00306789267516	4.84059911524579	4.89850930502928	4.84772002244795	5.05174683972779	5.035943155855	5.07611443469405	5.03374880962278	0.309153615589497	0.313442417668331	0.625364890885025
Merged-chr6-99388843-4	chr6	99388758	99388958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053202, intron 1 of 18)	intron (NM_053202, intron 1 of 18)	46487.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	6.06414593928031	6.07204176988996	6.58052433267116	6.78298481580437	6.10546929159607	5.92313990965052	6.19775809806772	6.12504627689138	-0.509295426508548	0.0616635939766365	0.262713410885438
Merged-chr15-37787611-4	chr15	37787481	37787681	+	835.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359844, intron 1 of 7)	ORR1E|LTR|ERVL-MaLR	4419.0	NM_001170866	52589.0	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	4.27345680866129	3.61704488254775	3.85929029778677	3.96510007666843	3.75398160180076	3.50838368617003	3.57392940971962	3.90513713995613	-0.729716996933631	0.14253740400626	0.420143331819144
Merged-chr10-91141740-4	chr10	91141653	91141853	+	976.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17790.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	4.95744032333686	5.52065394405736	5.79553321217599	5.37207717088267	5.69221371484239	5.82975861231197	5.38784575650976	5.44035786107442	0.272546854623156	0.386259730751213	0.687552275421561
Merged-chr12-117479185-4	chr12	117479080	117479280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37299.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	7.13525295151578	7.26887276080878	7.18331432582823	7.633180473341	7.35060486877038	7.3138297610516	7.45080935560382	7.13148642233746	-0.0258421491823893	0.900006719156616	0.962949822613742
Merged-chr11-117331750-4	chr11	117331635	117331835	+	714.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113488)	promoter-TSS (NM_001113488)	20.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	3.19378940487014	2.86907867310972	2.9039862647614	2.81743405395802	2.79952209753597	3.01339909991874	3.18039041112161	2.96597708394724	0.195444419508566	0.748453681999762	0.900999421474581
Merged-chr2-120137188-2	chr2	120137088	120137288	+	963.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 1 of 5)	ID_B1|SINE|B4	17387.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	3.62376167084294	3.83167538413719	3.78016522640439	3.70414614130714	3.50632747342826	3.68463134053928	3.49632573066547	3.9165375775825	-0.24233483957931	0.613867990894022	0.833585997266986
Merged-chr8-71381514-4	chr8	71381433	71381633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010150, exon 1 of 4)	5' UTR (NM_010150, exon 1 of 4)	419.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	6.01414567010018	5.85701530080881	5.69137795812611	5.25858407511994	5.82375229093731	5.7309688798727	5.94306626799341	6.25108367904601	0.377730563819338	0.205736171614027	0.509445159300775
Merged-chr4-109418325-4	chr4	109418227	109418427	+	940.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145948, intron 2 of 17)	intron (NM_001145948, intron 2 of 17)	2680.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	5.01988255246969	4.61014392813271	5.05042366839697	5.11844112896563	4.51892066416573	4.44723549043448	4.1915391619745	4.67423611326868	-1.06573978889551	0.00451942633913934	0.0440835655610496
Merged-chr5-125406657-4	chr5	125406557	125406757	+	977.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16640.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	5.45080507033709	5.24292767244436	5.06638145852442	5.1032928767177	4.75130608850337	5.1717556123246	5.37236501253241	5.16275593432684	-0.177801288392558	0.586602531825488	0.818765817177943
Merged-chr2-152738005-7	chr2	152737968	152738168	+	972.357117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010495)	TTS (NM_010495)	1817.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	5.11146025125833	4.5051602269635	4.39999109589167	4.59140894997598	4.65328460431759	4.88499306621837	5.14214736273261	4.8200079822265	0.42701106520834	0.256117008548878	0.567721270973876
Merged-chr7-75609903-7	chr7	75609792	75609992	+	962.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029332, exon 7 of 37)	exon (NM_029332, exon 7 of 37)	154358.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	3.94375652730996	3.91403390452405	4.12544089422758	4.06070184483384	3.71713307703772	3.85269947483053	3.7746414512339	4.07998206749165	-0.441612894379602	0.316971772060606	0.628905690750891
Merged-chr1-74379528-10	chr1	74379548	74379748	+	897.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013612, intron 4 of 14)	intron (NM_013612, intron 4 of 14)	4445.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	3.65230047868687	3.25228822281966	3.70544556800813	3.36373686905789	3.98813448000478	3.65870022192262	3.87882894440573	3.75375437639	1.03595126733007	0.0351916271078283	0.185961753964968
Merged-chr16-17694957-4	chr16	17694834	17695034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358404, intron 2 of 16)	intron (NM_001358404, intron 2 of 16)	27966.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	7.27124816353659	7.49912748046911	7.44951354263964	7.78827312005413	6.99614394364343	6.63542962353415	7.05520496149434	7.15711278904287	-0.743608278725941	0.000507005687064894	0.0077977869057027
Merged-chr12-79321096-4	chr12	79320997	79321197	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 5 of 10)	B4A|SINE|B4	23746.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	4.79502399929028	5.10057274423446	4.75662189542576	4.89916348078793	4.9636193277394	4.76459589754637	4.98512333416862	5.10020980886848	0.122862965827992	0.705485243610791	0.881751258208472
Merged-chr1-64318613-4	chr1	64318509	64318709	+	844.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-197220.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	4.24844090199785	4.65401357230307	4.24906554393633	4.627028396244	4.34976070662881	4.42378765112783	4.36606197623508	4.38292224485142	-0.2232646514469	0.563731347477779	0.806468366638948
Merged-chr8-106412401-4	chr8	106412287	106412487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2952.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	6.75035999078311	6.51477624795418	7.15208256963901	7.03889824500413	6.84280536113199	6.45377403739938	7.1477121905198	6.85945429253182	-0.0557149343607912	0.820361275318746	0.931216561407907
Merged-chr16-97523288-4	chr16	97523203	97523403	+	872.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9E|LTR|ERVK	-12778.0	NR_003508	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	3.90800450690861	4.34269966489844	4.67913562119513	4.58026540281243	3.85050277308245	4.03284641405274	3.83691226771324	3.72905503906392	-1.44872382457892	0.00179265741388927	0.0214705640355417
Merged-chr5-136988583-4	chr5	136988501	136988701	+	900.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027318)	promoter-TSS (NM_027318)	-642.0	NM_027318	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	4.4285799006911	4.45999241962266	4.19311012477363	4.68221204180601	4.51406848918095	4.46843667835126	4.40942443059378	4.73156088182146	0.146222707002552	0.70286682409727	0.880424292242087
Merged-chr2-68381333-4	chr2	68381234	68381434	+	933.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 5 of 17)	intron (NM_016866, intron 5 of 17)	90647.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	4.63110167920724	4.32032497426819	4.91248414662541	4.95612067274068	4.66185174686098	4.2348499421799	4.48785407215837	4.77677796082051	-0.381163163608447	0.337219805531154	0.647016127715841
Merged-chr17-83514457-7	chr17	83514344	83514544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159529)	promoter-TSS (NM_001159529)	-111.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	5.95976639301117	6.47193359387755	6.56714096139802	5.97993059202479	6.17824972154354	6.27144139623636	5.95367531541678	6.17278084965939	-0.176200676426697	0.504622698687677	0.770888948942188
Merged-chr6-124782699-4	chr6	124782605	124782805	+	960.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21A|LTR|ERV1	-2978.0	NM_001302555	16977.0	Mm.3207	NM_013588	ENSMUSG00000030125	Lrrc23	4921537K05Rik|B7|Lrpb7	leucine rich repeat containing 23	protein-coding	4.32835246530833	4.8103422481489	4.73818573343998	4.31229592464013	4.79627483583846	4.50623903231293	4.52886128701239	4.37359220774678	0.0255107537344124	0.948006387027693	0.981359015857754
Merged-chr7-84188402-4	chr7	84188312	84188512	+	860.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36519.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	3.75785612192857	3.77042732527538	4.01661262611542	3.96629014075554	4.29573031763648	4.04100735256806	3.99925869497258	3.91712463773128	0.517710823859833	0.235365818425261	0.54540168602701
Merged-chr7-114302916-4	chr7	114302809	114303009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26793.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	5.00750084975997	5.17402527080763	5.17453582290467	5.2490648853348	4.81682665786371	5.11139633102039	5.20938099280431	5.20171478537576	-0.149401626339447	0.631815595882276	0.843565602967326
Merged-chr3-19954157-4	chr3	19954070	19954270	+	975.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2884.0	NM_001276250	12870.0	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	6.32622693327969	6.54667558066304	6.23187612853629	6.27787914346243	6.68688580513065	6.60855811385269	6.38318489926583	5.72395483715014	0.0862508249941272	0.754423197164034	0.903310322656128
Merged-chr11-119084803-3	chr11	119084744	119084944	+	927.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007625, intron 2 of 4)	intron (NM_007625, intron 2 of 4)	1393.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	3.58542544239356	3.59563266771077	3.27589296375366	3.70558181940753	3.82166031660291	3.70289334887645	3.457988431623	3.96300060330969	0.583188257099667	0.253421279668772	0.564721751011949
Merged-chr2-173062171-4	chr2	173062119	173062319	+	960.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40317.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	4.86075380880569	5.47440747779654	5.66769554976004	5.14179806831919	5.12178523980787	4.73241965700672	4.98879464817014	5.04485640198251	-0.620471567972542	0.0754562318358195	0.296620806219765
Merged-chr11-77491280-4	chr11	77491216	77491416	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1638.0	NM_172945	268445.0	Mm.39296	NM_172945	ENSMUSG00000037907	Ankrd13b	AW124583|B930093C12Rik	ankyrin repeat domain 13b	protein-coding	4.52820680380628	4.33503520810769	4.52893447527373	4.40349750567145	4.56909947472584	4.12827125194581	4.54614639895549	4.52599149599645	0.0369570226044702	0.922066294512909	0.971085088289503
Merged-chr2-70662369-5	chr2	70662303	70662503	+	829.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027352, intron 1 of 9)	intron (NM_027352, intron 1 of 9)	894.0	NM_027352	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	3.24044217035782	3.12229433166849	3.05882868315772	3.01369311902498	2.94131529021826	3.41124173938002	3.11109685143764	3.44731685451258	0.505013577265979	0.38110316043764	0.68346036424265
Merged-chr19-24281486-3	chr19	24281344	24281544	+	995.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008044)	promoter-TSS (NM_008044)	-858.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	4.36307424719602	3.95712743095587	4.21692266748687	3.80461925988914	3.54875030014451	3.69156882821069	3.89248602612988	3.56990226526406	-1.20231611534169	0.0143642067884783	0.101754565584902
Merged-chr10-70195937-4	chr10	70195843	70196043	+	713.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-8721.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	3.53189275684782	3.57599339344356	3.76614927226794	3.52112104365626	4.09355124592288	3.88747565945327	4.23015714908167	3.96219484027539	1.3184968605514	0.00311005900334292	0.0328687289976163
Merged-chr7-118480486-3	chr7	118480430	118480630	+	858.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11445.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	3.55618935254773	3.6380465800453	3.50276834303122	3.52996675195526	3.45797298156736	3.56077201088976	3.37579671103352	3.55469225047846	-0.230854452741301	0.636477068340004	0.846262211816288
Merged-chr1-183669864-4	chr1	183669776	183669976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79101.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	6.18586967887725	5.81619825532493	5.5682172160084	6.436040753032	6.33798060523281	6.24003780944367	6.33645821532136	6.41442122243666	0.40628578551657	0.147316122220532	0.428289599458206
Merged-chr11-5065285-4	chr11	5065183	5065383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190406)	promoter-TSS (NM_001190406)	44.0	NM_144560	78926.0	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	5.9588920239422	5.74099992168916	6.28095057199616	6.35199492577585	5.62384310380189	5.99298565792795	6.28339893394673	6.31132212440602	-0.0635475947987771	0.826931764952705	0.933592020200304
Merged-chr11-115709389-4	chr11	115709240	115709440	+	822.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008163)	promoter-TSS (NM_008163)	-743.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	3.44814097450636	3.32827665601256	3.56116615050492	3.20945811931871	3.48974780310372	3.67938501288238	3.74352093609195	3.75817911862135	0.949056145318755	0.056357739303071	0.248589423427731
Merged-chr7-19750310-4	chr7	19750224	19750424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159724)	promoter-TSS (NM_001159724)	-751.0	NM_001159724	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	5.79758076705406	6.21573893585942	5.87578141142702	6.11182944814537	6.31194242216832	6.41694740552715	6.2823980792439	6.27447523420246	0.452732222423202	0.0559832078387343	0.247627936288421
Merged-chr17-12960634-4	chr17	12960598	12960798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009338)	promoter-TSS (NM_009338)	27.0	NM_009338	110460.0	Mm.439711	NM_009338	ENSMUSG00000023832	Acat2	AW742799|Tcp-1x|Tcp1-rs1	acetyl-Coenzyme A acetyltransferase 2	protein-coding	7.45146735658477	7.6939576789836	7.78420000186092	7.68767194637112	7.45186489187519	7.51838633401021	7.46347918817559	7.504637809901	-0.236813708316292	0.169978386791032	0.462916673472618
Merged-chr15-97667668-3	chr15	97667599	97667799	+	766.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38123.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	3.12667120701978	3.26566071306553	3.49770978890391	3.02665749109125	3.05780495912414	3.17487108262535	3.11591447962761	3.12549855686996	-0.451824882423714	0.430876252377744	0.721309079893587
Merged-chr15-59831224-4	chr15	59831118	59831318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-36259.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	7.24765647490875	7.69083962382754	7.61336529279621	7.4791442477854	7.6279806546253	8.01644774730627	7.44115388591541	7.33207497350257	0.146872182567893	0.493379709774832	0.764142062450997
Merged-chr11-72428801-3	chr11	72428702	72428902	+	788.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6724.0	NM_027819	71522.0	Mm.23336	NM_027819	ENSMUSG00000040471	Ggt6	9030405D14Rik|AI427679|AW490214	gamma-glutamyltransferase 6	protein-coding	3.7988177514367	3.55710465877655	3.48850732426139	3.24202694632893	3.5837450653876	3.71915696747822	3.47533299390999	3.79701346806217	0.39414933642082	0.44040536915947	0.727846334286887
Merged-chr10-115816760-4	chr10	115816664	115816864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146010)	promoter-TSS (NM_146010)	-520.0	NM_001168680	216350.0	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding	5.84910688767174	5.86870927422738	5.80498088851164	5.89754993088869	5.34189941657679	5.78158496359495	5.52327805339397	5.36666264960643	-0.595626861445408	0.025501760948419	0.150541663919083
Merged-chr4-139158498-1	chr4	139158398	139158598	+	553.0	f0_balb.idr	Intergenic	Intergenic	22157.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	3.04315962490865	3.08106919449638	3.0435532781522	3.41924410878056	2.81982931170916	2.74371181680938	2.78090064351081	2.98283887020044	-1.48297439525928	0.021827192848048	0.135748165987873
Merged-chr12-69454661-4	chr12	69454569	69454769	+	882.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20881.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	4.95746583899022	4.89404596924855	5.02003387948975	5.22141939063187	4.32386973601593	4.44506469319418	4.24314628342509	4.50422957405779	-1.44251392241563	6.13585345637393e-05	0.00134558273926598
Merged-chr11-80142145-4	chr11	80142018	80142218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183275)	promoter-TSS (NM_183275)	35.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	5.58477620910529	5.84576618823117	5.36822497717767	5.15551956636314	5.44771066523173	5.51341616066041	5.08114322424848	5.17301186695797	-0.327760470559201	0.310499213333971	0.622616866559057
Merged-chr3-79586984-4	chr3	79586871	79587071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4366.0	NM_001356326	67738.0	Mm.295252	NM_026352	ENSMUSG00000027804	Ppid	4930564J03Rik|CYP-40|Ppidl|Ppif	peptidylprolyl isomerase D (cyclophilin D)	protein-coding	6.2468233719279	6.56099315249339	6.1234292190847	6.60270555117372	6.42457283431543	6.18835900362947	6.39862866613052	6.60188404741016	-0.00293470964426303	0.990261353915616	0.996152324385859
Merged-chr11-106673661-4	chr11	106673572	106673772	+	888.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	41609.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	4.47871697440457	4.44098433562626	4.28098725758195	4.25499767513841	4.16447382198154	4.00115224578693	4.07848140326827	4.23433881606694	-0.593684061903421	0.137687146248699	0.412754101366077
Merged-chr2-127519064-2	chr2	127518957	127519157	+	900.25	f0_c57.idr|f1_c57bl6.idr	intron (NR_110989, intron 1 of 8)	intron (NR_110989, intron 1 of 8)	2335.0	NM_001291005	56461.0	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	3.46756024627229	3.62765337154018	3.59808138958369	3.40021120062671	4.22468316066493	3.84009911965048	4.00233495191039	4.49935618406108	1.85047844552239	7.19466617885471e-05	0.00153786529713123
Merged-chr8-88199254-6	chr8	88199150	88199350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164497)	promoter-TSS (NM_001164497)	37.0	NM_001164498	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	6.71877630920514	7.09155244698137	7.26206670291472	6.98785811392748	6.95522541346106	7.27478145658118	6.92771303674995	7.13910112696128	0.0664475987782898	0.751756181891734	0.902294431953731
Merged-chr15-81514385-4	chr15	81514289	81514489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48073.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	7.65115560286363	7.49522242273031	7.55931127491968	7.43442095132438	7.4522530653684	7.47352121336422	7.57361272442128	7.20117334297882	-0.130942887202535	0.468937491031909	0.748027916143612
Merged-chr7-144582489-4	chr7	144582375	144582575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010175)	promoter-TSS (NM_010175)	-39.0	NM_010175	14082.0	Mm.5126	NM_010175	ENSMUSG00000031077	Fadd	Mort1/FADD	Fas (TNFRSF6)-associated via death domain	protein-coding	6.83986582001041	6.8891002287397	6.59723967844867	6.76008320579424	7.10366417281809	7.12468907181083	7.38431715430796	6.90432270449157	0.507869056712044	0.0133616585852286	0.0968995920976041
Merged-chr16-44173085-4	chr16	44172994	44173194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029889)	promoter-TSS (NM_001029889)	-303.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	8.66491004394476	8.60659771896949	8.8323373905682	8.93403651179771	8.72720723173553	8.58850853499979	8.90012662694367	8.59243241540146	-0.0759443920680662	0.64211897965997	0.848998712583196
Merged-chr17-45807648-4	chr17	45807535	45807735	+	911.412476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73129.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	4.16963472703108	4.72778967740175	5.25665385650854	4.93219121895998	4.48729133849701	4.35593031611538	4.40729865874876	4.78823016356603	-0.659607679610003	0.120333259472979	0.384003634881289
Merged-chr7-15946016-4	chr7	15945922	15946122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133831)	promoter-TSS (NM_133831)	86.0	NM_133831	68077.0	Mm.277634	NM_133831	ENSMUSG00000041560	Nop53	5330430H08Rik|9430097C02Rik|AU041936|AW536441|Gltscr2|PICT-1|R74911	NOP53 ribosome biogenesis factor	protein-coding	6.51233619687182	6.73241558417637	7.35024143455268	6.42942363502121	6.55794646260383	6.69113479458399	6.4453136758836	6.84042807897034	-0.229695530906782	0.394042041340789	0.693233111559752
Merged-chr4-55763314-4	chr4	55763216	55763416	+	925.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-230841.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	5.11288049694413	4.58626979087553	5.41904197073506	5.28119214148877	4.8583065648691	4.55846806498552	4.92204923724528	5.22993937794879	-0.432763429323807	0.249259160614058	0.560328612484111
Merged-chr3-51277448-4	chr3	51277377	51277577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291063)	promoter-TSS (NM_001291063)	37.0	NM_001291063	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	6.8355139922184	6.42492223199409	6.81076683799837	6.46301510237727	6.37288740815214	6.47736996450779	6.59364948356304	6.38999428089904	-0.256790958522816	0.256827757185121	0.568554813817675
Merged-chr9-110893724-4	chr9	110893697	110893897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153354, intron 17 of 25)	intron (NR_153354, intron 17 of 25)	13475.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	3.97565422196796	3.99199592118199	4.20535911389626	4.30492092411669	4.08111093861792	3.81647232973268	3.9598623745629	4.11608212150678	-0.356396567166927	0.408014874610068	0.704118963290259
Merged-chr8-95166087-4	chr8	95165989	95166189	+	801.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23549.0	NM_001145831	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	4.00185131932405	4.1696206130188	4.84894891698884	4.3669288340678	4.52103162798036	4.34006203949246	4.2415337429001	4.34785431363936	-0.0301626619427912	0.943778187967437	0.979787407574636
Merged-chr14-61799464-4	chr14	61799376	61799576	+	941.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117103.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	4.5200982781974	4.68231225789992	4.6476404444367	5.04093389491743	4.74775856599913	4.45982536970619	4.74052009122305	4.93133529009952	-0.055319173363594	0.881079866080332	0.955322489265647
Merged-chr5-8660245-8	chr5	8660129	8660329	+	797.842285	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011076, intron 3 of 29)	intron (NM_011076, intron 3 of 29)	-37277.0	NM_198620	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	3.4762593723313	3.61587992521307	3.65270869185769	3.9887970746384	3.7081712456936	3.92732111289586	3.79167741362947	3.70443318421922	0.194950979890306	0.691788094319211	0.87467626526963
Merged-chr4-115984276-4	chr4	115984166	115984366	+	777.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33658.0	NM_010173	14073.0	Mm.256025	NM_010173	ENSMUSG00000034171	Faah	AW412498	fatty acid amide hydrolase	protein-coding	3.74337495800588	3.45419133226278	3.51970767805773	3.45610752690746	3.72146071621054	3.86452005410145	3.96008155032281	3.97599686960755	1.02900919355239	0.0263676943093835	0.153977037759259
Merged-chr19-4125850-4	chr19	4125741	4125941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025889)	promoter-TSS (NM_025889)	17.0	NM_016666	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	8.46589204469959	8.5960743465933	8.13436224519066	8.08450193224407	8.33067550348947	8.63518802272279	8.41807148953957	8.42151777616199	0.150761635254545	0.413367864280601	0.708338880200893
Merged-chr16-13109770-4	chr16	13109670	13109870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015769)	promoter-TSS (NM_015769)	34.0	NM_015769	50505.0	Mm.287837	NM_015769	ENSMUSG00000022545	Ercc4	AI606920|Xpf	excision repair cross-complementing rodent repair deficiency, complementation group 4	protein-coding	8.65171072473865	8.47150986338936	8.52495822760495	8.33613054867074	8.4521965622638	8.60750279603058	8.74490114826028	8.36595116860048	0.0676299438543526	0.684200224062146	0.870646873868743
Merged-chr10-26373828-2	chr10	26373728	26373928	+	904.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347467, exon 1 of 21)	5' UTR (NM_001347467, exon 1 of 21)	244.0	NM_001359255	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	2.59113158181758	2.574606754979	2.44372815449024	2.43880359602414	2.52966003412039	2.83425997054094	2.99396206577095	2.90042963089981	1.5459972248617	0.0216046081826523	0.134750256685164
Merged-chr5-150593233-3	chr5	150593122	150593322	+	898.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133898, intron 1 of 4)	intron (NM_133898, intron 1 of 4)	1303.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	3.53115770773119	3.69710949075717	3.80315919757313	3.64042611720425	3.73015642297801	4.01900318358358	3.68634757591903	3.69915408535806	0.35304206738904	0.446179488510524	0.731950720521114
Merged-chr11-48855628-4	chr11	48855516	48855716	+	866.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	15804.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	3.80624772520986	4.06155960013688	3.75263893584496	3.63932357763947	3.95212350363049	3.69374421361072	4.22966633898062	3.90641864404139	0.402808004055347	0.383910525327331	0.685555904565125
Merged-chr1-10089777-3	chr1	10089664	10089864	+	648.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026493, intron 14 of 29)	B4|SINE|B4	51546.0	NM_026493	211660.0	Mm.244046	NM_026493	ENSMUSG00000056763	Cspp1	2310020J12Rik|4930413O22Rik|AA387550|BC055915|Cspp2|Cspp3	centrosome and spindle pole associated protein 1	protein-coding	2.97690821570415	2.87876900191024	3.15075975387337	2.77199179300782	2.88331311564332	2.95586827275891	3.18982488945667	3.03611499458771	0.324239642844471	0.589412215317693	0.820464677958613
Merged-chr15-78573220-4	chr15	78573143	78573343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009008)	promoter-TSS (NM_009008)	-460.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	5.5187956967738	5.8327889968013	5.3992972589035	5.46029954482939	6.00506967583818	5.63819156132279	5.57496187052562	5.94924711023191	0.42025555079924	0.133004642570131	0.406105758986762
Merged-chr4-126210131-4	chr4	126210043	126210243	+	907.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7433.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	4.16981288304478	4.17643835092367	4.00803120923094	3.95640209572284	4.60460668001484	4.53492281192781	4.74776932475208	4.76839166100299	1.40004119023469	0.000171067497488163	0.00319423226749999
Merged-chr5-33652481-5	chr5	33652309	33652509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356983)	TTS (NM_001356983)	165.0	NM_001289725	20492.0	Mm.4172	NM_009193	ENSMUSG00000004642	Slbp	-	stem-loop binding protein	protein-coding	6.78208712538623	7.25305162786691	7.07038516015113	6.7839691835141	7.09500520703178	7.659568455515	7.34582060626325	7.26804704003609	0.503144953793476	0.0229681479931173	0.140246187355417
Merged-chr2-170101331-4	chr2	170101213	170101413	+	911.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29907.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	4.353395228552	4.38822901214017	4.39650678563689	4.68456407534342	4.02527778974843	4.39141600582803	4.29128714614087	4.35135236090627	-0.523794108119327	0.188297693726441	0.48686263728266
Merged-chr8-36265419-4	chr8	36265320	36265520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15904.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	5.26205250280902	5.18444178337934	5.35287625469248	5.72999149689336	5.11396601656037	5.12710544627149	5.43607196789289	5.19569873928095	-0.360531306155977	0.252916598317799	0.564177835459043
Merged-chr14-66844795-4	chr14	66844687	66844887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	23813.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	5.85887594068811	5.98145797734884	5.68128777293302	5.71547591431947	6.04419771552473	6.53589494360653	5.94307710298818	5.67727488756566	0.432759925040173	0.124627039486782	0.391951700865256
Merged-chr14-73122698-4	chr14	73122616	73122816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19794.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	7.86608120547743	7.61021041963858	8.11801632961981	7.95323892659888	7.79720324821342	7.56099329152286	7.8581787328897	7.79458476213422	-0.181620914003543	0.325181607652975	0.636756579123277
Merged-chr15-103484321-3	chr15	103484222	103484422	+	881.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153505, intron 22 of 30)	intron (NM_153505, intron 22 of 30)	-18712.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	3.40474487183913	3.29917888147073	3.87739999932008	3.85136894069818	3.69694986456732	3.64210525283395	3.51280547097055	3.78421595038267	0.0639889616076514	0.902940562352721	0.964007893920869
Merged-chr2-92434188-4	chr2	92434083	92434283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009963)	promoter-TSS (NM_009963)	-114.0	NM_009963	12953.0	Mm.254181	NM_009963	ENSMUSG00000068742	Cry2	AV006279|D130054K12Rik	cryptochrome 2 (photolyase-like)	protein-coding	8.8328898934034	8.86250941522871	8.5566673086915	8.62250980424841	8.75256177351221	8.87242998125898	8.8401767856586	8.57998624598686	0.052465423655689	0.7425113536365	0.898494026733066
Merged-chr1-152800122-4	chr1	152800068	152800268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010877)	promoter-TSS (NM_010877)	15.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	5.17393416587009	5.3870729444907	5.13816479814778	5.70713663964427	5.75361793159587	5.64072270953993	5.94857284344985	5.62352423761243	0.591160845727613	0.0508146078778119	0.233757705301802
Merged-chr10-88336578-4	chr10	88336474	88336674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 4 of 6)	MER31A|LTR|ERV1	20501.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	6.95979761721618	6.90003773118116	7.51412788977996	7.10948608421881	7.1671335413616	7.32402333264117	7.14521679520777	7.29385344166106	0.125410575146501	0.550946806610064	0.798797129613765
Merged-chr15-81400099-4	chr15	81399980	81400180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347075)	promoter-TSS (NM_001347075)	-58.0	NM_177310	321003.0	Mm.390833	NM_177310	ENSMUSG00000022401	Xpnpep3	APP3|E430012M05Rik	X-prolyl aminopeptidase 3, mitochondrial	protein-coding	6.59860637801635	6.58933218564792	6.17841898522192	6.3885368466287	6.76141214991159	6.93555748453322	6.28971899637381	6.6995306750886	0.353703594975792	0.137700434969209	0.412772337480001
Merged-chr5-151344952-4	chr5	151344872	151345072	+	832.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23703.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	3.57437737964264	3.69558217542449	3.44884677051165	3.94843609523471	3.82086934588224	3.96638094896078	3.78016188910283	4.0664423185479	0.607435469944413	0.215452831510702	0.521625619663558
Merged-chr19-55744162-3	chr19	55744061	55744261	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 3 of 15)	intron (NR_138565, intron 3 of 15)	2351.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.57511280899537	3.29244140006327	3.67160667224311	3.23009460305929	3.17782807975681	3.58887895854292	3.22451220012161	3.46984618061504	-0.260850904532088	0.635996089355666	0.845986164419408
Merged-chr12-16866011-4	chr12	16865877	16866077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29001.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	6.37482193144434	6.66977205184227	6.35750096905237	6.74612596768199	6.48439784193536	6.33511855855209	6.89434084682014	6.06210320085896	-0.112039745100218	0.667075073378626	0.86221345902729
Merged-chr1-174048430-4	chr1	174048336	174048536	+	828.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1939.0	NM_146716	258711.0	Mm.377648	NM_146716	ENSMUSG00000047048	Olfr432	MOR123-2	olfactory receptor 432	protein-coding	3.67681866673008	4.22255936375904	4.27202299379359	3.91750870050899	4.1342232735134	4.18054292528452	3.991409823987	3.85102381052799	0.0212963707503097	0.962426433552554	0.986542881001127
Merged-chr14-64310063-4	chr14	64309946	64310146	+	955.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253714, intron 1 of 4)	intron (NM_001253714, intron 1 of 4)	106910.0	NM_001253716	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	4.66000311195976	4.60563415329671	5.0220158877171	5.14398573517122	4.68136073613429	4.4073787007075	5.19802503704425	4.85089659153295	-0.148203376308111	0.701997138426927	0.879956577840418
Merged-chr10-58529967-4	chr10	58529839	58530039	+	918.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162956, intron 10 of 15)	ORR1F|LTR|ERVL-MaLR	32002.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	4.21527050033276	4.71982493880186	4.50837376847734	4.0887823659569	5.01729581094361	4.88338501167585	4.68791388939835	4.881641355428	1.04254559962346	0.00583388732563001	0.053209926441699
Merged-chr8-122269536-4	chr8	122269429	122269629	+	884.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12612.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	4.48035019338809	4.24871738752704	4.48109344064946	3.93989834569853	4.08514546154749	4.45058062071434	4.07249038592473	4.13704097739321	-0.248912909200398	0.563462439195279	0.806342969490355
Merged-chr7-144932571-4	chr7	144932485	144932685	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007631, exon 5 of 5)	3' UTR (NM_007631, exon 5 of 5)	7340.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	5.26725409260223	5.13209765415899	4.96892307466575	5.45764217126195	5.29178250893793	4.98949529296792	5.29946715261406	5.07322917359556	-0.109706258401974	0.728511894308506	0.892047963615777
Merged-chr13-96510769-4	chr13	96510694	96510894	+	945.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_144624, intron 2 of 10)	intron (NR_144624, intron 2 of 10)	8393.0	NR_144623	27015.0	Mm.89926	NM_012048	ENSMUSG00000021668	Polk	DINP|Dinb1	polymerase (DNA directed), kappa	protein-coding	4.97139380101627	4.96308807477297	4.87154755141336	5.35025075000059	4.62443064877486	4.38812467267918	4.53572440660716	4.59714223274304	-1.09898626132495	0.00212640922972057	0.0245189830815293
Merged-chr2-118374025-4	chr2	118373890	118374090	+	890.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201367)	promoter-TSS (NM_201367)	-571.0	NM_201367	381413.0	Mm.70979	NM_201367	ENSMUSG00000040133	Gpr176	Gm1012	G protein-coupled receptor 176	protein-coding	3.67852833997897	3.79638824482688	3.90315229526524	3.54981997449655	4.04117904222724	4.17497744041127	4.03118407040948	4.40468025614823	1.22095824903544	0.00537065834426152	0.0500888483079391
Merged-chr1-92752019-4	chr1	92751938	92752138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79607.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	5.9340047574563	5.86436427474488	6.43888198660657	6.25946072870372	5.49063974641772	5.78688928246007	5.66255262901183	5.66022856088873	-0.811056365041724	0.00269518611291939	0.029378354108957
Merged-chr16-17939020-4	chr16	17938932	17939132	+	953.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10813.0	NM_153150	13358.0	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	4.77888270307297	4.95375082967976	4.48321355061982	5.03180869473362	4.8827275144858	4.51587393229374	5.02613744155313	4.88513289571024	0.000797495587871992	0.998233906216973	0.999188468881297
Merged-chr11-88044471-3	chr11	88044383	88044583	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2890.0	NM_001078167	110809.0	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	3.51843941682939	3.47526283207687	3.85558727263587	3.64462444936556	4.73330415500146	4.78677711740449	4.65764874702589	4.46984372649037	2.62228667853078	4.46545179612865e-09	2.53466023442298e-07
Merged-chr6-97826878-4	chr6	97826779	97826979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	19821.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	6.46221750558628	6.98702028866396	6.54799437297473	6.82016535387216	6.60175489032528	6.72442071996953	6.49810979673993	6.09689499434606	-0.327718842614761	0.181223316846854	0.477716260641517
Merged-chr3-95494525-3	chr3	95494410	95494610	+	862.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009709, exon 20 of 21)	exon (NM_009709, exon 20 of 21)	-4700.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	3.50397663751194	3.64027526047637	3.44793360229674	3.4085903141511	3.59897299556784	3.67490306950057	3.59557196265407	3.32548800623344	0.188500891719382	0.703781484973694	0.880874682497364
Merged-chr11-115657110-4	chr11	115656995	115657195	+	927.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	-28800.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	4.60809987534543	4.57680333324077	4.29734909753228	4.44151313484388	4.41356347420734	4.74237640807604	5.09512400414414	4.48148585892312	0.482253163444147	0.211063044467936	0.515716175112166
Merged-chr12-78916027-2	chr12	78915936	78916136	+	856.400024	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-9098.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	3.05125849225714	3.19000285275327	3.20685313971044	3.10902378017411	2.39324422839002	2.53884726662814	2.8009115536709	2.51592273916428	-3.46434163936745	0.000107574287487067	0.0021587342004629
Merged-chr19-29464193-3	chr19	29464085	29464285	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	B2_Mm2|SINE|B2	53266.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	4.28195406346884	4.06087655631765	4.15237015474361	3.75803780606041	4.13451874448658	3.71274689138023	4.51981290579249	4.23795535667291	0.297385177015052	0.523110973638678	0.782359002463945
Merged-chr3-14533837-4	chr3	14533735	14533935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028915)	promoter-TSS (NM_028915)	47.0	NM_001163580	71710.0	Mm.257449	NM_028915	ENSMUSG00000027550	Lrrcc1	1200008A14Rik|4932441F23Rik|AI195358|AI447421	leucine rich repeat and coiled-coil domain containing 1	protein-coding	6.11170842805656	5.60615347272853	5.88342680173661	6.07215021844847	5.88422923571042	5.86241220745254	5.91988442363835	5.62712580266304	-0.174954118790467	0.507215009648456	0.772710503440438
Merged-chr12-3496292-2	chr12	3496192	3496392	+	842.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_172421, exon 10 of 11)	exon (NM_172421, exon 10 of 11)	69435.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	3.2427712687795	3.32045237340465	3.24319432365745	2.89187086156587	3.24040525831747	3.29572442014715	3.34208554745659	3.40667090747458	0.553556072424283	0.319950462214146	0.631766330519035
Merged-chr1-23920936-4	chr1	23920852	23921052	+	710.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357395, intron 1 of 10)	intron (NM_001357395, intron 1 of 10)	1429.0	NM_001357395	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	3.63263585023095	3.81177024186785	3.75484755186978	3.62404419050175	4.24659111419362	4.14341018246452	4.366486067364	4.19342677670144	1.46372625337097	0.000491091492628929	0.00761223897078278
Merged-chr10-60371745-4	chr10	60371632	60371832	+	927.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159572, exon 7 of 7)	3' UTR (NM_001159572, exon 7 of 7)	24881.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	4.97694432468267	4.27341037013161	4.82862659777822	4.73484445870383	4.20944123955311	4.25483850802361	4.2628002350425	4.22925056565081	-1.12791462928655	0.00483904266893248	0.0463855464301303
Merged-chr1-88227292-4	chr1	88227142	88227342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 1 of 41)	intron (NM_001281466, intron 1 of 41)	222.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	7.33474690990171	7.20110371678829	7.8498626671946	7.55101770867369	7.32540172353388	7.22230815511008	7.71147302471094	7.24467796818494	-0.154052496422724	0.485172892302201	0.759141836872752
Merged-chr10-26780776-4	chr10	26780657	26780857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	8245.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	6.1112416972287	6.16075355721027	6.46832471428816	6.57351135341335	6.14763775595396	6.08966847710162	5.58722678798839	5.88352075713436	-0.618767275032506	0.0201804917965678	0.128839108941421
Merged-chr16-3706895-4	chr16	3706809	3707009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001161790)	TTS (NM_001161790)	11215.0	NM_001161790	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	6.49247096295726	6.85483816602028	6.91442272602011	6.48669825078643	6.70126254087161	6.72090550891002	6.55936060426986	6.3235782557805	-0.151353114382838	0.512867278327556	0.776017039843318
Merged-chr2-153214868-4	chr2	153214755	153214955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10586.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	8.26603859626199	8.28367560333793	8.49376879409756	8.21822650791778	8.08252671892634	8.0883766011234	8.14710483689368	7.98531185458169	-0.304057123109758	0.0552729472553004	0.245843945360736
Merged-chr12-103325689-4	chr12	103325566	103325766	+	935.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 7 of 9)	CpG	10707.0	NM_001195726	100504156.0	Mm.425749	NM_001195726	ENSMUSG00000096753	Fam181a	EG544888	family with sequence similarity 181, member A	protein-coding	4.60122553127131	4.77036839427048	4.18880185738506	4.43338050120738	4.95604016312644	4.51876112297022	4.61882703940319	4.47541127460985	0.336577969000321	0.384908967491796	0.686335535913647
Merged-chr11-3290988-3	chr11	3290919	3291119	+	927.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001253691, exon 1 of 5)	exon (NM_001253691, exon 1 of 5)	562.0	NM_019574	56218.0	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	3.64513242251952	3.86819368535531	3.85672887494503	3.90712765564121	3.6386895938921	3.9268382321128	3.68733941982983	3.90215098772478	-0.121530899603303	0.79056113052341	0.918840742585233
Merged-chr1-155096881-4	chr1	155096794	155096994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010500, exon 1 of 1)	3' UTR (NM_010500, exon 1 of 1)	2742.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	6.47266620969021	6.02209054080179	6.14254809434819	6.69450681910612	6.23718331413597	6.11595600054486	6.35750614488432	6.54722213131019	-0.0807211018071252	0.759026041292716	0.905467910117288
Merged-chr12-118759768-3	chr12	118759659	118759859	+	776.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Plat_L3|LINE|CR1	-86570.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	3.70533043194708	3.5736757314216	3.90856834259417	4.07948340175685	3.78320864543939	3.64619675447511	3.74454223798343	4.03923084548229	-0.0944552120491217	0.844831149500407	0.941218991545198
Merged-chr1-164135500-4	chr1	164135399	164135599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011347, intron 8 of 15)	intron (NM_011347, intron 8 of 15)	-16336.0	NM_007976	14067.0	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding	6.22907159484268	6.22648265556838	6.95472486466184	6.87277877564551	6.50531857137163	6.44786068031987	6.21840700425985	6.22571485965161	-0.388836716059536	0.147962774336212	0.429432918021499
Merged-chr6-119502126-3	chr6	119501991	119502191	+	806.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	intron (NM_009525, intron 1 of 4)	22423.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	3.56707469699406	3.67351775129845	3.46186780569126	3.76280176841693	3.3275395723109	3.26306003523312	3.21047133547397	3.46000089954333	-1.08023264546422	0.0400500268771111	0.201902803343861
Merged-chr10-57728515-4	chr10	57728416	57728616	+	938.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039050, intron 4 of 4)	intron (NM_001039050, intron 4 of 4)	-56407.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	4.59840747502652	5.1231935026977	4.79845486822302	4.74873418891893	4.49108428759125	4.64281844590778	4.91402393445037	4.96737567176395	-0.144211590069357	0.690465636314208	0.873950421520214
Merged-chr12-3855869-2	chr12	3855769	3855969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 3 of 22)	intron (NM_007872, intron 3 of 22)	6375.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	4.51686537440039	4.47048300946391	4.51757535009035	4.69606814859296	4.55505676400322	4.25884047149707	4.72330153911385	4.77724491085494	0.0690512646175775	0.851945843723384	0.944205487207068
Merged-chr7-81303932-3	chr7	81303829	81304029	+	895.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 8 of 21)	intron (NM_008803, intron 8 of 21)	41305.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	3.81125513355383	3.74689752339027	3.47993541682782	3.6905581736644	3.95281257587146	3.93168082065711	3.64222366820909	3.6544066591149	0.354827663415052	0.44977620643094	0.734839862538956
Merged-chr12-35039207-2	chr12	35039107	35039307	+	829.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7982.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	2.96798681533144	3.32565785983417	3.15979099903491	2.6973525483762	3.22372646795708	3.14700571581206	3.20505772409201	3.37595179853485	0.726631591803039	0.233739118218055	0.543454520665151
Merged-chr18-46621682-3	chr18	46621573	46621773	+	962.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23969.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	5.22683323941422	4.60721212140683	4.29320751838306	5.18071128292413	4.05828624163471	4.26193544339005	4.37150302865352	4.64458120707631	-1.19237128934396	0.0067740463637986	0.0594464118023451
Merged-chr5-66094079-4	chr5	66093972	66094172	+	900.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	ORR1B1|LTR|ERVL-MaLR	4107.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	3.54820387693799	4.39992343807885	3.67554293200591	3.83740892765592	3.91428703875793	4.12153209497421	4.23410774752793	3.78957468658431	0.303095586616853	0.549369269325766	0.79798967011526
Merged-chr7-24547036-4	chr7	24546939	24547139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009532, exon 2 of 18)	5' UTR (NM_009532, exon 2 of 18)	340.0	NM_001360170	22594.0	Mm.4347	NM_009532	ENSMUSG00000051768	Xrcc1	Xrcc-1	X-ray repair complementing defective repair in Chinese hamster cells 1	protein-coding	8.8189998490428	8.93822451836293	8.59740957590241	8.69484844044768	8.79978185477058	8.67240629049319	8.88574068500476	8.42655715086104	-0.0734244789574643	0.665952699944205	0.861789092235629
Merged-chr1-13372758-5	chr1	13372656	13372856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302702)	promoter-TSS (NM_001302702)	-327.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	7.36348849714817	7.64678490789781	8.20162494350128	7.38978040583615	7.06517953278067	7.47985684907939	6.97908984296526	7.25339881414304	-0.65035101501961	0.00793755355967653	0.066868983784411
Merged-chr3-41348952-3	chr3	41348875	41349075	+	856.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144224.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	3.59688567022324	3.64971114126177	3.75478240545708	3.77246379870426	3.267863954381	3.71554846187357	3.46828669244107	4.0181402754963	-0.166524304007649	0.750377838276395	0.901747852063193
Merged-chr6-136728406-4	chr6	136728309	136728509	+	893.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127318, intron 13 of 26)	intron (NM_001127318, intron 13 of 26)	53333.0	NM_145067	14917.0	Mm.222729	NM_145067	ENSMUSG00000042638	Gucy2c	AI893437|GC-C|Gcc	guanylate cyclase 2c	protein-coding	5.45569205349014	5.24040510287348	5.06901075941568	5.52265329503209	4.49729138805939	4.54145975835266	4.53821504709596	4.89216576734211	-1.44716444017427	2.60863061344825e-05	0.000643603876723164
Merged-chr2-30801703-3	chr2	30801586	30801786	+	898.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198000)	promoter-TSS (NM_198000)	51.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	3.71435306549948	3.20419359464497	3.37508566509259	3.40501733927814	3.21325430487893	3.30811801651557	3.30573423748685	3.2569351874739	-0.592622908011371	0.273622275195924	0.585291499163683
Merged-chr11-69655502-4	chr11	69655358	69655558	+	870.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009235, exon 1 of 2)	exon (NM_009235, exon 1 of 2)	421.0	NM_009235	20670.0	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	3.42851683889098	3.45524409234748	3.36845865176751	3.20625598856784	3.61189097704925	4.03987226202193	3.52773541696624	3.36674730420884	0.970777827992488	0.062148987456997	0.263739508627055
Merged-chr3-96489673-3	chr3	96489574	96489774	+	710.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEz-int|LTR|ERVK	-35511.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	2.49645575153594	2.5135697164369	2.49667025275811	2.11592583601897	3.19410282332799	3.47343763775304	3.00442429423066	3.60937626569133	6.64678685429176	8.46851792158473e-12	7.70819229079897e-10
Merged-chr3-115661251-4	chr3	115661150	115661350	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53805.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	4.79326211720646	4.61836024197332	4.7940479270217	4.43957433110188	5.05366337880875	5.04131339285672	5.10147494906235	4.93463321661139	0.789425609579693	0.0164237399280227	0.111943443870222
Merged-chr8-39308771-1	chr8	39308671	39308871	+	1000.0	f0_balb.idr	intron (NR_044988, intron 2 of 3)	intron (NR_044988, intron 2 of 3)	10791.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	3.05250059836496	3.41719070365657	3.1687450064976	3.79390209634923	2.64323281014446	2.65498325785553	2.62470892717923	2.62966785595266	-4.47815719719899	1.17093336329311e-05	0.00031738715105042
Merged-chr8-105303579-4	chr8	105303484	105303684	+	792.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148952, intron 7 of 9)	intron (NM_148952, intron 7 of 9)	-2017.0	NM_172760	234683.0	Mm.237966	NM_172760	ENSMUSG00000014791	Elmo3	9930107J06|BC058752|CED-12|Ced12	engulfment and cell motility 3	protein-coding	3.90048957656176	3.43672428779699	3.73605707188561	3.67298153294296	4.08527430084903	4.30685505275609	4.20012559558625	4.21745159192314	1.38996103178625	0.0016188790811697	0.0198364940813527
Merged-chr16-36621247-3	chr16	36621126	36621326	+	990.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 2 of 7)	intron (NM_019388, intron 2 of 7)	44851.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	4.45686010370611	4.33534892810329	4.37602269390047	4.8719649588494	4.02695135273664	4.22046401090836	4.17748303044562	4.14361543501891	-0.996438805147344	0.0158843740818499	0.10913454273861
Merged-chr3-36000682-4	chr3	36000585	36000785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023644)	promoter-TSS (NM_023644)	-7.0	NM_023644	72039.0	Mm.249016	NM_023644	ENSMUSG00000027709	Mccc1	1810045E08Rik|2310058B18Rik|MCCalpha|Mcca|R75106	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	protein-coding	7.88818227809033	7.89869752490323	7.94748787817342	8.01521029939965	8.09408981122891	8.16675975764045	8.24793873550686	8.04431540570802	0.253314008825314	0.106635034283589	0.360051212976317
Merged-chr3-145628040-4	chr3	145627961	145628161	+	612.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21924.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	3.47489524627397	3.51036399673702	3.34843292868984	3.6361902699055	3.89436171976936	3.5285878270813	4.03181439496874	3.74552586691966	0.939439133925579	0.0589749822586505	0.255775058627131
Merged-chr15-100469025-4	chr15	100468929	100469129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357982)	promoter-TSS (NM_001357982)	18.0	NM_134093	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	6.99166493200293	7.17145277358858	6.83628205213248	6.80908290435205	6.81720469396846	6.86626293825087	6.94527503561904	6.66852338593787	-0.178484165556286	0.384481630067228	0.686016676237897
Merged-chr5-65991385-4	chr5	65991274	65991474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027961, intron 4 of 6)	ORR1B1|LTR|ERVL-MaLR	12911.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	7.0756718219247	7.98168631875434	7.16116181053689	6.87769960175017	7.3145970123185	7.53210660897919	7.33798881977998	6.88448177053318	-0.0833737925273034	0.765758430185558	0.908357650317684
Merged-chr7-79721535-4	chr7	79721432	79721632	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001113471, exon 9 of 9)	exon (NM_001113471, exon 9 of 9)	-7346.0	NM_001291222	16576.0	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	4.76492060390675	4.58715442981215	4.69157740677659	4.585093741572	4.25305831013262	4.78671524821563	4.81220072134659	4.7979645223193	0.0380178976851509	0.91810603935353	0.969798468133041
Merged-chr5-98034464-4	chr5	98034318	98034518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3456.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	5.42220502405018	5.06256481919323	5.89502350515961	5.69284411283618	5.09869919993688	5.22259487703307	5.09023520753571	4.66079322966964	-0.949325137927722	0.00621546780714095	0.0557122255439473
Merged-chr5-66246118-4	chr5	66246017	66246217	+	775.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13781.0	NM_001302833	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	4.06923700927166	3.9415402044086	3.66740044087498	3.92737245278984	4.20141971533739	3.89813352004362	3.9633506158722	3.66561125247442	0.131022359412111	0.776495219362058	0.912932991254018
Merged-chr6-148214950-4	chr6	148214860	148215060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015615, intron 1 of 1)	intron (NR_015615, intron 1 of 1)	-2586.0	NM_001286560	67456.0	Mm.59812	NM_026168	ENSMUSG00000030304	Ergic2	1200009B18Rik|4930572C01Rik|AA408438|Ptx1	ERGIC and golgi 2	protein-coding	6.07647674149425	6.19415761506714	5.55785529394266	5.97074019912798	6.0427751455642	5.54435435066182	6.34951105750333	6.11313354071951	0.115435515067433	0.689110756259618	0.873152494300117
Merged-chr11-61956802-4	chr11	61956708	61956908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281818)	promoter-TSS (NM_001281818)	45.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	5.67856415359032	5.7922466625977	5.62591314599183	5.5326473970838	6.04013439799259	5.77509762159691	5.8661700364319	6.01809790251818	0.463836765122899	0.0659328825873821	0.273407320109949
Merged-chr8-84831673-4	chr8	84831572	84831772	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183358)	promoter-TSS (NM_183358)	593.0	NR_033145	23863.0	Mm.304252	NM_201227	ENSMUSG00000053226	Dand5	Cerl-2|Cerl2|Cerr2|Dte|GREM3|coco	DAN domain family member 5, BMP antagonist	protein-coding	5.06490492383886	5.58721285149428	4.32582450505163	4.64070670209422	5.07753739302467	5.27283606866967	5.00728279185871	5.24759159023813	0.304720340399943	0.459911387976908	0.742271214480192
Merged-chr17-69201552-4	chr17	69201434	69201634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	B4A|SINE|B4	42178.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	5.87381124512974	5.59829260318163	5.85176134281204	5.89047279519943	5.82287006819405	5.82688959410903	5.99471406580781	5.93741784420385	0.132160170256497	0.595762902980344	0.824150570800077
Merged-chr2-163743459-4	chr2	163743371	163743571	+	972.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001272052, intron 1 of 11)	intron (NM_001272052, intron 1 of 11)	6768.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	4.70109112313392	4.98072723769523	5.30296866637447	5.04464038545319	4.53029995195509	4.40694983599386	4.71944144498774	4.88659229813531	-0.780682241894266	0.030368892421673	0.168600529887081
Merged-chr4-126228241-4	chr4	126228141	126228341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25531.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	6.00101443946904	6.77768040599527	6.1927753718358	5.85474152233048	6.37483498282586	6.61646235758912	5.6934192387723	5.95126387209534	-0.0695732559261985	0.830637216662697	0.935016944393499
Merged-chr7-118517987-2	chr7	118517887	118518087	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304758, intron 5 of 6)	intron (NM_001304758, intron 5 of 6)	15369.0	NM_001304758	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	3.03525781390554	3.42271279803543	3.27965508819771	3.12557709571429	3.15877169639223	3.21124568953342	3.37205311467422	3.16173138813969	0.0223641259624672	0.967793629859295	0.988579929904943
Merged-chr3-69114805-2	chr3	69114705	69114905	+	716.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008467, intron 1 of 16)	intron (NM_008467, intron 1 of 16)	12287.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	3.52857451236465	3.4969736240938	3.52904439731803	3.83765170339188	3.45195020097632	3.33205853665277	3.51545458049105	3.77560519403215	-0.29184327385596	0.571715023568	0.810781529929199
Merged-chr13-99337699-4	chr13	99337617	99337817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 3 of 9)	MIRb|SINE|MIR	6961.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	6.84885793299663	6.75777681266663	7.23718150893805	7.26635431453168	7.273901191488	7.11266915581202	7.36147188212567	7.58518729456251	0.391335105647584	0.0744073111787916	0.294017386419999
Merged-chr7-141194071-4	chr7	141193980	141194180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130443)	promoter-TSS (NM_001130443)	-50.0	NM_001172065	70552.0	Mm.45104	NM_153777	ENSMUSG00000038637	Lrrc56	5730427C23Rik|BB110509|mFLJ00101	leucine rich repeat containing 56	protein-coding	7.68174603561663	7.99017573141048	7.85073928239171	7.77319577092663	8.08885779582743	7.75386650259936	8.26419909890062	7.58932613253481	0.16501231971547	0.414635803919142	0.709131932222317
Merged-chr10-17948139-4	chr10	17948032	17948232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033432)	promoter-TSS (NM_001033432)	-65.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	7.89489245711375	8.04384214360348	8.0009596453615	7.81793868342283	8.08172005126655	8.10958746763552	7.76778269615944	7.81585991131894	0.0220576973656878	0.899216141316451	0.962471390297979
Merged-chr8-126688179-4	chr8	126688100	126688300	+	976.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94764.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.06319878023694	4.86230860574449	4.99983385721589	4.89103370296392	4.61410335543081	4.75312529714352	5.09967960494441	4.92882743755975	-0.193511380480777	0.562524436593306	0.805707247859895
Merged-chr9-57558743-3	chr9	57558606	57558806	+	635.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2238.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	2.65305036195933	2.93047315763512	2.98461060326972	2.93752919616236	2.76210333225226	3.03332668739472	2.9142144000269	3.09485627283544	0.291392560172107	0.639597674322625	0.847607151813091
Merged-chr13-108316275-4	chr13	108316226	108316426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178683)	promoter-TSS (NM_178683)	-11.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	7.5309557987038	7.43057603522046	7.09955555621567	7.49894715047632	7.52913137559487	7.47467464673497	7.47719537276574	7.50908586542608	0.121539179900131	0.507503750817709	0.772818324085317
Merged-chr7-96856123-3	chr7	96856008	96856208	+	978.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 24 of 32)	intron (NM_011858, intron 24 of 32)	-54559.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	4.04812854252151	3.83803824875855	4.04877520484925	4.41455420933078	3.75934314560717	3.44171965297389	3.38688910247402	3.59064009821491	-1.65171223809399	0.00157116820536376	0.0193932831246693
Merged-chr19-36822663-4	chr19	36822566	36822766	+	849.029175	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-11566.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	4.06190928997642	4.46338314486689	4.57569057740203	4.1650050156306	4.05395117222331	4.18788311112962	4.48184393283186	4.20870414508724	-0.215186006018095	0.606360102919164	0.829368409964156
Merged-chr15-27856398-7	chr15	27856312	27856512	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 11 of 56)	intron (NM_001081302, intron 11 of 56)	169436.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	4.24056040390241	4.35622239287289	4.4712540056646	5.01479155561139	4.07957257596794	4.68520837419618	4.40834162587214	4.62660475469407	-0.249073023740996	0.57103035523161	0.810348982482694
Merged-chr2-59387362-4	chr2	59387260	59387460	+	882.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040510)	promoter-TSS (NR_040510)	-678.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	4.74508653008584	4.15485061854145	4.84808118670783	4.00994790127331	5.08931186872954	4.46221785992364	4.68702001506104	4.46681666328248	0.498943442101682	0.261287633277162	0.573233645684815
Merged-chr4-140566975-4	chr4	140566872	140567072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001112723, intron 16 of 26)	intron (NM_001112723, intron 16 of 26)	81784.0	NM_001112723	72754.0	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	5.64943759729903	5.89313148937076	5.6233741438586	5.86185679892438	5.92428634701152	5.71579007766154	5.90630706054467	5.6988271461613	0.0780269942191122	0.760947477526553	0.906431126096988
Merged-chr1-165616844-4	chr1	165616745	165616945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	17696.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	5.28106013426919	4.431224919227	6.04214634289673	6.0814287817028	5.26855466730832	4.81829227713953	5.99263379667516	5.40197178829786	-0.28767379215528	0.712036948519205	0.884715833326134
Merged-chr13-119461999-3	chr13	119461888	119462088	+	871.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113550)	promoter-TSS (NM_001113550)	-771.0	NR_153825	67392.0	Mm.390641	NM_026127	ENSMUSG00000062822	4833420G17Rik	2210017J06Rik|5730533D17Rik|AW107518|C85193	RIKEN cDNA 4833420G17 gene	protein-coding	3.55572414499056	3.47677068415058	3.31336300877998	3.71767039345233	3.50624830606565	3.72801921310399	3.54237576809978	3.93420746881318	0.4640330761875	0.364535793685133	0.669279814395716
Merged-chr2-112240464-4	chr2	112240391	112240591	+	856.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207206, intron 1 of 13)	intron (NM_207206, intron 1 of 13)	650.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	3.83859569132677	4.03749831240749	3.83911497512814	3.98707685086489	3.98088047919606	4.16551040427852	3.92811868076751	4.29309274864248	0.427986203931251	0.31654319942639	0.628496776400878
Merged-chr15-96936964-4	chr15	96936879	96937079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83380.0	NM_001358060	69354.0	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	5.66280119153604	5.59136675780163	5.25701970686734	5.58974932680221	6.00141433344582	5.29417076317067	5.36028668846277	5.82257962741408	0.221433880363368	0.47355818665952	0.75124977120592
Merged-chr9-44479821-4	chr9	44479726	44479926	+	862.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2999.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	4.09703344934149	4.24407160847865	3.76389422914848	3.80586122012037	4.36281166008745	4.64604600800556	4.30287520957184	4.1434341980021	0.973468239793946	0.0227820752483799	0.13944244010646
Merged-chr2-68784899-4	chr2	68784785	68784985	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76556.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	5.16663131868235	5.10735695566947	5.09840992496403	5.31217448419638	5.24205556794908	5.20415132617273	5.84051835259695	5.46217108820177	0.493903672214636	0.114281083846969	0.373859772452381
Merged-chr12-33168661-4	chr12	33168551	33168751	+	781.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	L1MB7|LINE|L1	20965.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	4.03939935319007	4.48114606823188	4.24786470539785	4.74730212163222	4.7364165911396	4.42288383740148	4.3215394517498	4.29250036202128	0.0881864553994748	0.837054136759382	0.938145671742126
Merged-chr8-75085053-4	chr8	75084964	75085164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8554.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	5.59420604469344	5.55894672544016	5.33466465494464	5.86368676193521	5.56298203327357	5.6317597823961	5.40038643133371	5.78512764726751	-0.0367142018603933	0.898165554925182	0.962041232660971
Merged-chr13-9152478-4	chr13	9152386	9152586	+	833.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 11 of 17)	intron (NM_172585, intron 11 of 17)	58605.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	4.28672403616124	4.14959297151426	4.15044124076302	4.49373332613019	4.53211294183796	3.94559784166729	4.31035265303498	4.14798665610009	-0.061679715328913	0.884826210025673	0.956746645612156
Merged-chr4-121024086-4	chr4	121023985	121024185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6838.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	7.45593302763759	7.18250777797405	7.24096682880113	7.18378891504299	7.34442592675419	7.27013115706551	6.8764760464454	7.00057359521565	-0.166141936434625	0.413874326551446	0.708792686767345
Merged-chr11-52223120-3	chr11	52223010	52223210	+	887.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8885.0	NM_011543	21402.0	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	3.65239599444927	3.78507710637675	3.26791004937416	3.50199826785169	3.83855085575047	3.82766368896273	4.01753668563423	3.99189932822361	1.05378098947607	0.0281347407865811	0.160580764529553
Merged-chr1-40115478-2	chr1	40115378	40115578	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010555, intron 5 of 8)	intron (NM_010555, intron 5 of 8)	29385.0	NM_001360800	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	2.99702528284134	2.67213826255873	2.67998820797959	2.87281060670628	2.71894451760835	3.04944921440875	2.86914805424672	2.99575244441646	0.423186339865625	0.503296919021297	0.770342596304131
Merged-chr10-30712676-4	chr10	30712580	30712780	+	952.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 3 of 14)	intron (NM_001358842, intron 3 of 14)	-56813.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	5.09092770993554	4.76757486990168	5.05848609207022	5.34171317197031	5.03640606912288	4.80364358957412	5.45575954584951	5.08830896367742	0.0440251606848276	0.898471550793243	0.962195238304554
Merged-chr2-102685882-2	chr2	102685755	102685955	+	608.666626	f0_balb.idr|f1_balb.idr	intron (NM_001077514, intron 1 of 10)	intron (NM_001077514, intron 1 of 10)	-20583.0	NM_011393	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	3.00414708013935	2.85109597963329	3.06058671409322	3.05755764731179	2.89109044888872	2.78299826491126	2.99334922203097	2.88270633480188	-0.475781004267614	0.429810397630904	0.720626426084
Merged-chr6-87916147-4	chr6	87916053	87916253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173737, intron 2 of 6)	intron (NM_173737, intron 2 of 6)	2177.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	6.896590780393	6.92748710532937	6.47365519761904	7.18675833792813	6.64134897059208	6.57575426861839	6.62292285666326	6.93097337435526	-0.300557958213726	0.20181566080326	0.504230998642117
Merged-chr1-60961232-4	chr1	60961129	60961329	+	977.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16685.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	5.11402325940423	4.87835536600751	4.75400450009769	4.59685212722674	4.84325648601204	4.72574930002538	4.76865719473501	4.50041762617548	-0.238644964009545	0.503510601954186	0.770436586300708
Merged-chr2-59395526-8	chr2	59395420	59395620	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C1|LTR|ERVK	-8838.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	4.8342699421459	4.95614733951467	5.0778741424121	4.27389628215253	5.0149248451467	5.25002228950749	4.92074956373973	5.07434642713296	0.527637091946968	0.152723056805446	0.437099897883187
Merged-chr8-126616030-4	chr8	126615917	126616117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22581.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.87469840064687	5.8641248411582	5.8757337011517	5.551066858472	5.72384926227688	5.80431134653395	5.99328726030777	5.67743618091701	0.0332686281091239	0.899255429693039	0.962498905749012
Merged-chr11-3165576-3	chr11	3165511	3165711	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030207, exon 8 of 33)	exon (NM_030207, exon 8 of 33)	27852.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.76783013862765	5.30502368713369	6.03824402172087	5.54934086002748	3.60315265363084	4.09696963168744	3.86745635411119	4.08899823545385	-4.47549700842252	2.15897086795055e-17	5.07172895742086e-15
Merged-chr12-86906547-4	chr12	86906367	86906567	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21653.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	4.4149886055338	4.44700597545789	4.32660373547703	4.33555092856655	4.63147925261025	4.30652773351737	4.62869093850556	4.61161338441408	0.409073370794043	0.261114579600773	0.573005209121725
Merged-chr6-122571482-4	chr6	122571374	122571574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17665.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	7.25627019352861	7.48636192301802	7.70783154480418	7.3286487097029	7.16408487992805	7.57073442771777	7.42431193335354	7.39838991181157	-0.0817225843497329	0.679999902078984	0.868593041138696
Merged-chr7-19229414-2	chr7	19229314	19229514	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207525, intron 1 of 1)	intron (NM_207525, intron 1 of 1)	1025.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	2.79292460525564	2.94787084603622	2.79319749495601	2.86891586056218	2.86150360675567	3.22695564703141	3.25961177913925	3.27226557969709	1.25824394555261	0.0370648283473073	0.191955574573122
Merged-chr6-128851310-3	chr6	128851208	128851408	+	803.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254946, intron 2 of 2)	RMER12B|LTR|ERVK	-24993.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	3.52793910924746	3.47984566592637	3.30447656403569	3.2432265050625	3.38244118223639	3.69638758611336	3.40791664512139	3.24043064134733	0.179917272729774	0.732180456050973	0.893941108445294
Merged-chr14-33101829-3	chr14	33101724	33101924	+	729.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 20 of 58)	intron (NM_001146022, intron 20 of 58)	83242.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	3.47649347517314	3.3042155228827	3.64114363206833	4.25032426118101	3.3570159630735	3.46983710949255	3.675675208136	3.35328038643776	-0.839833918815263	0.150295609284659	0.432920204494871
Merged-chr5-8355785-3	chr5	8355686	8355886	+	827.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	RSINE1|SINE|B4	12374.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	3.23301677505425	3.25081437375106	3.63145553523775	3.58178183181401	3.54569231610461	3.59056929911233	3.51548473423838	3.52767315653777	0.326907325206311	0.526577706442747	0.783803651205536
Merged-chr19-8020112-4	chr19	8020054	8020254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54127.0	NM_001361980	171405.0	Mm.326517	NM_134256	ENSMUSG00000067656	Slc22a27	OAT6-L|OAT6-S|Oat9	solute carrier family 22, member 27	protein-coding	6.95692056869042	6.81619462653465	6.86973046953381	6.38535590085163	6.74258063857673	7.0455731133322	6.40349394892561	6.63584881239508	-0.0509280217466441	0.835263248684182	0.937285789387356
Merged-chr13-93248868-3	chr13	93248765	93248965	+	954.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54892.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	3.88905659598249	3.64551610951023	3.88966972568382	3.76362271291775	3.37669442362359	3.24711790562532	3.68445894314278	3.69770502026886	-0.903662077462877	0.0773433582529218	0.300748815442531
Merged-chr2-166697484-4	chr2	166697388	166697588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	16344.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	6.31280046701803	6.53356983176505	6.05629128572205	5.6232664272883	6.42706448708171	6.31764056591654	6.20807509826116	6.17732437468778	0.193175854536092	0.493222643844079	0.764078058767225
Merged-chr3-107233660-4	chr3	107233582	107233782	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001256174, exon 3 of 3)	exon (NM_001256174, exon 3 of 3)	3068.0	NM_001256174	319929.0	Mm.30453	NM_001256174	ENSMUSG00000094613	A630076J17Rik	-	RIKEN cDNA A630076J17 gene	protein-coding	4.08514570518106	3.92663996454751	4.03382915888405	4.02708264243872	4.22755498289218	4.40356246496457	4.52861866696608	4.61642093447396	1.04763210255382	0.00811195206072432	0.0678576372934888
Merged-chr7-45744575-4	chr7	45744471	45744671	+	902.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017465, intron 1 of 6)	intron (NM_017465, intron 1 of 6)	-2093.0	NM_001360784	54200.0	Mm.271634	NM_017465	ENSMUSG00000003271	Sult2b1	AI326997|BB173635|ST2B1|SULT2B	sulfotransferase family, cytosolic, 2B, member 1	protein-coding	4.36184101060464	4.26724862955364	3.9624497219251	3.9644058007533	5.27708400302849	4.887291234011	5.10409394929419	5.15421937320034	2.12685992948213	3.24532909667758e-09	1.89966512970735e-07
Merged-chr7-16046183-4	chr7	16046074	16046274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25671.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	6.20306279277149	5.96214682001632	6.00156077642355	6.2596542025051	6.11559494666109	5.91166840321774	6.20905468747326	5.80820532565595	-0.148283656073888	0.549709553518493	0.798118843649012
Merged-chr1-7113085-4	chr1	7112985	7113185	+	973.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183028, intron 1 of 5)	intron (NM_183028, intron 1 of 5)	24165.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	4.62418114266498	4.46315773314034	4.84788635489156	5.02725672922332	4.29022291330426	4.43488580181868	4.79005847527853	4.97376511431196	-0.261942844313338	0.511150401015988	0.775198670343823
Merged-chr12-99511923-4	chr12	99511822	99512022	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51919.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	5.43547155677942	5.31246721158043	5.5471161398266	5.58095737022784	6.00782210785556	5.46020366576937	4.96867860237273	5.54319864976067	0.149289349563442	0.653247361972794	0.854997557892684
Merged-chr15-38292188-4	chr15	38292063	38292263	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289471, exon 5 of 5)	3' UTR (NM_001289471, exon 5 of 5)	7737.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	5.58480129975308	5.74949950164578	5.7552397618138	5.67289696666754	5.16258008215973	5.44072870920648	5.13376727616122	5.58182801591828	-0.622136848538157	0.0279738222393208	0.159995877313991
Merged-chr11-73193306-4	chr11	73193216	73193416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357891, intron 3 of 11)	intron (NM_001357891, intron 3 of 11)	5703.0	NM_031251	83429.0	Mm.259852	NM_031251	ENSMUSG00000005949	Ctns	AI195360|AW049661	cystinosis, nephropathic	protein-coding	6.10686223006896	6.41185435021738	6.22913632116086	6.60013259115581	6.28516269839661	5.83670183969534	6.47131799205773	5.89706113736441	-0.312807466076113	0.242307691265785	0.553025913252551
Merged-chr15-66810248-4	chr15	66810142	66810342	+	846.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 1 of 7)	intron (NM_001029841, intron 1 of 7)	21587.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	4.39744990687762	4.0577687677976	4.51115424513552	4.52079733283941	4.20436838207245	4.04965759410713	3.96651600979126	4.13379275615408	-0.73083556723264	0.0792080001421889	0.304554772355429
Merged-chr7-34229570-4	chr7	34229504	34229704	+	878.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008155, intron 1 of 17)	intron (NM_008155, intron 1 of 17)	732.0	NM_008155	14751.0	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	4.27114235580869	4.13043633994549	4.13890016316379	4.59085219892462	3.93599285579482	4.00355317005313	3.97449827505029	4.22638855355926	-0.712106176401198	0.0977284207901781	0.342552384075643
Merged-chr1-153501992-8	chr1	153501885	153502085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14325.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	6.21575329263381	6.13922159466975	6.29158753324769	6.39934413822045	5.8706278583039	6.37279635660335	6.06456644461023	6.21240521573535	-0.217135833061543	0.370637430063372	0.674860859945465
Merged-chr10-4394115-3	chr10	4393942	4394142	+	966.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-5934.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	3.8916208484157	3.30188343987385	3.6337162682022	3.39960011173225	3.22292896592622	3.22244831946947	3.35587661388359	3.3067602810237	-1.02653617919884	0.0640056503531853	0.268748226610458
Merged-chr6-50378101-4	chr6	50377861	50378061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	L1MB1|LINE|L1	4876.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	6.19857721163107	6.30581357606846	6.52726487764378	6.11389082755002	6.16648534497314	6.79505462072384	6.60073954939711	6.74229656434761	0.445505179052293	0.0737578110013467	0.292495806410656
Merged-chr4-149426622-4	chr4	149426414	149426614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_022022, exon 1 of 27)	5' UTR (NM_022022, exon 1 of 27)	117.0	NM_022022	63958.0	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	5.49733554323934	5.19003572359959	5.72527910787688	5.43180014381549	5.36259613166387	5.75203952722724	5.29434897069831	5.69793167792229	0.114224197986157	0.701024600903402	0.879483655557957
Merged-chr18-35498968-4	chr18	35498845	35499045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030749)	promoter-TSS (NM_030749)	-20.0	NM_030749	81500.0	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding	7.42822610610097	7.55202381186194	6.96576660686683	7.37120616137561	7.69399495632921	7.76127189223612	7.1827585393965	7.57907581406377	0.297844706038573	0.16699381941767	0.45848209395888
Merged-chr17-26506228-4	chr17	26506121	26506321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013642, exon 4 of 4)	3' UTR (NM_013642, exon 4 of 4)	2251.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	7.30856217684445	7.05792231153048	7.49133760873925	7.24483770020336	6.99034843307515	7.45545208071168	7.45428700616472	7.03000202053298	-0.0487914605618781	0.81869843087852	0.930475502974644
Merged-chr16-14132041-4	chr16	14131934	14132134	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081154, intron 15 of 26)	intron (NM_001081154, intron 15 of 26)	27240.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	6.04362977091685	5.3046977541487	5.76176402599101	5.9077444877013	5.35871070015034	5.11098424240471	5.30669822690372	5.39153483135848	-0.835538559659217	0.00611067280133275	0.0549945902819743
Merged-chr6-72139717-4	chr6	72139623	72139823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-16526.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	8.22871827646143	8.072988428956	8.58171831824725	8.58299327549234	7.93428721527164	7.89060801779269	8.26976810696172	7.89448936929319	-0.488193444129956	0.0121762675538822	0.0908580090384504
Merged-chr13-54758168-4	chr13	54758066	54758266	+	652.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_033610)	TTS (NM_033610)	-8292.0	NM_012014	26913.0	Mm.41812	NM_012014	ENSMUSG00000069227	Gprin1	GRIN1|Z16	G protein-regulated inducer of neurite outgrowth 1	protein-coding	3.85036491648647	3.79151816389672	3.69005559879535	3.89995353337851	3.92009018517307	3.91891322344546	3.88393580779256	3.99143718009625	0.312040915293269	0.472936045240137	0.750939474528145
Merged-chr9-64744057-4	chr9	64743948	64744148	+	907.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-6292.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	4.64602619815209	4.40015497660851	4.30770982417703	3.76579510459446	3.76650071392316	4.60228431011371	4.24417707626661	3.96177260068206	-0.329005198403844	0.506997038733781	0.772669783107415
Merged-chr17-36951759-4	chr17	36951660	36951860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029632)	promoter-TSS (NM_029632)	32.0	NM_029632	76497.0	Mm.46176	NM_029632	ENSMUSG00000036398	Ppp1r11	1500041B02Rik|AV117883|Hcgv|Tcte5|Tctex-5|Tctex5	protein phosphatase 1, regulatory (inhibitor) subunit 11	protein-coding	8.51881697297753	8.71131601356028	8.25699306200135	8.58412275716694	8.59649246128613	8.35434957496835	8.63947065894019	8.49516681468395	-0.00455463013334906	0.978389696545848	0.992358604173043
Merged-chr2-26325960-3	chr2	26325872	26326072	+	682.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355575, intron 7 of 13)	intron (NM_001355575, intron 7 of 13)	6202.0	NM_001199147	67839.0	Mm.266611	NM_153410	ENSMUSG00000026930	Gpsm1	1810037C22Rik|AW107933|Ags3	G-protein signalling modulator 1 (AGS3-like, C. elegans)	protein-coding	3.22319686184079	3.22040339649559	3.39370847143931	3.15797394660027	3.27714481506969	3.20641106410122	3.48018472889657	3.44355613369996	0.406836663491898	0.44054980309941	0.727944976505159
Merged-chr14-57407575-4	chr14	57407480	57407680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9097.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	6.02145454272796	6.44896571296153	6.06442022528001	6.17522124613289	5.78291887967277	5.7463310267672	5.88112096539221	5.88356461044735	-0.582369348002607	0.0187127403209289	0.122456021265367
Merged-chr2-35109897-2	chr2	35109797	35109997	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_012018, intron 1 of 43)	intron (NM_012018, intron 1 of 43)	405.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	6.07112076684507	6.06617651775032	6.28323463874371	5.96412955064302	5.99568851826959	6.24732788382202	5.90996462441204	6.0678565003282	-0.053368755282084	0.824505574685912	0.932696938095671
Merged-chr5-140321611-4	chr5	140321501	140321701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010752)	promoter-TSS (NM_010752)	-21.0	NM_001356585	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	7.41148842517446	7.52579100123846	7.25689735975391	7.12902260627345	7.50650442035268	7.48833955518463	7.23162762968508	7.76956760062692	0.240786306401177	0.23311957454743	0.542738485953961
Merged-chr5-35728120-4	chr5	35728033	35728233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359895, intron 1 of 17)	intron (NM_001359895, intron 1 of 17)	1143.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	5.76239214815627	6.0073114614379	6.16346166197808	6.48412653505886	5.80662045147671	5.77600555451344	5.90405857552735	6.10062623556672	-0.393339880180583	0.152958661280321	0.437440015720679
Merged-chr11-61764959-3	chr11	61764853	61765053	+	890.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-2865.0	NM_001164243	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	3.31987555701252	3.6099638583897	3.59000634187383	3.6695413911224	3.4532530984898	3.16440331035534	3.30867267529141	3.31865420186901	-0.828181952069537	0.122153086632573	0.387327089801111
Merged-chr3-137918555-4	chr3	137918471	137918671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019920)	promoter-TSS (NM_019920)	16.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	6.90137993996492	6.85712450523307	6.95591477247512	6.13962609746815	7.25680761917323	7.39118425133877	7.32763671732964	7.3403058590454	0.819730634452684	0.000633483164781904	0.00931818520066359
Merged-chr4-121009979-4	chr4	121009892	121010092	+	915.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	L2a|LINE|L2	7255.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	4.48061689405854	4.36233841323823	4.44002727128386	4.48994638097097	4.40348150075722	4.11911927567608	4.33391149255901	4.82986849437818	0.00778688505055663	0.984243777637575	0.994287366569187
Merged-chr11-19920475-4	chr11	19920349	19920549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3993.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	6.94983961219141	7.51245865217453	7.36226766223191	7.31129929361307	7.39229442929767	7.3680827175996	7.5614501040736	7.23083663190379	0.121366954467129	0.543834346246483	0.794912862282994
Merged-chr8-46242122-3	chr8	46242030	46242230	+	702.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31068.0	NM_007450	11739.0	Mm.16228	NM_007450	ENSMUSG00000031633	Slc25a4	AU019225|Ant1|mANC1	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4	protein-coding	3.66766459826678	3.70650758740906	4.0342776601038	3.56311037018454	3.80081917091297	3.61447813642983	3.54413996445322	3.49661669942522	-0.367092254508624	0.459329599609502	0.74191298834993
Merged-chr12-111386714-4	chr12	111386598	111386798	+	929.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8980.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	4.52625405359433	4.88539902880851	4.44291893384198	4.29876203254155	4.44400125508882	4.43475994669185	4.33394520094711	4.71242056829502	-0.139066466721645	0.722187092082779	0.889145957666795
Merged-chr4-3779886-4	chr4	3779788	3779988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	MLT1A0|LTR|ERVL-MaLR	55767.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	5.26059850636328	5.27993282733486	5.51485431019359	5.24069112948406	4.8489180916796	5.23723606101158	5.461309721744	5.53615229289574	-0.065065402854094	0.838842266206274	0.938853173799904
Merged-chr7-25436872-4	chr7	25436784	25436984	+	855.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015569, intron 4 of 6)	intron (NR_015569, intron 4 of 6)	-23998.0	NM_153576	232983.0	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	4.56887673354256	4.69557839963321	4.1976745146352	4.7358991379207	4.67812976479193	4.6599110390306	4.377586625044	4.75395183075371	0.101289453488578	0.789097662809036	0.91835324030065
Merged-chr7-29007949-3	chr7	29007836	29008036	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009109, intron 101 of 105)	PB1D9|SINE|Alu	25082.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	5.26928195679199	5.22334804564059	5.57723456373226	5.39484584010303	4.13373350070527	4.22034607517272	4.25021606909345	4.6171885673865	-2.27894814926888	1.20260086235744e-09	7.62922698589485e-08
Merged-chr1-121509345-4	chr1	121509313	121509513	+	985.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010483)	TTS (NM_010483)	19052.0	NM_010483	15564.0	Mm.4833	NM_010483	ENSMUSG00000050534	Htr5b	5-Ht5b	5-hydroxytryptamine (serotonin) receptor 5B	protein-coding	4.60801929022204	5.13784575951814	4.56600430463847	4.18465612120267	4.98143857562319	4.65533987195783	4.85006319868249	4.83593550860746	0.366620756829036	0.358954616311087	0.664897874786135
Merged-chr15-66969095-5	chr15	66968970	66969170	+	819.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008681, intron 1 of 15)	CpG	571.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	3.35881831389883	3.08446819034253	3.25197450751488	3.06782096659041	3.02992777283766	3.24625675507425	3.23917979571627	3.19305151722587	-0.048134882561067	0.931019969383906	0.97520485035137
Merged-chr7-139233902-4	chr7	139233790	139233990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027164, intron 8 of 10)	intron (NM_027164, intron 8 of 10)	-14592.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	6.35014829362739	6.29996242973863	6.29869202002456	6.39291557892087	6.11339865362807	5.87010687337821	6.28407504359708	5.71419595221036	-0.487609333630218	0.0461089097307858	0.220474679949456
Merged-chr9-120110348-4	chr9	120110238	120110438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144793)	promoter-TSS (NM_144793)	-61.0	NM_144793	208638.0	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	5.8021006186484	5.79538381647054	5.26894289764454	5.67974561592819	6.05189822791247	6.02593846650437	6.09154656922993	6.06090406587128	0.640487428674539	0.0129317855632563	0.0946918188505772
Merged-chr10-71344872-4	chr10	71344800	71345000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134007)	promoter-TSS (NM_134007)	-51.0	NM_134007	52637.0	Mm.254114	NM_134007	ENSMUSG00000037710	Cisd1	AU043990|AW743335|D10Ertd214e|Zcd1|mitoNEET	CDGSH iron sulfur domain 1	protein-coding	7.85083622195337	7.69157421548517	7.80727904478456	7.69663611898775	7.76602270072325	7.77817558806405	7.83598005852301	7.86866965637396	0.0696570372446504	0.666085302491786	0.861863428748523
Merged-chr11-61497806-4	chr11	61497704	61497904	+	692.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-3538.0	NM_001291034	23939.0	Mm.38172	NM_011841	ENSMUSG00000001034	Mapk7	BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7|b2b2346Clo	mitogen-activated protein kinase 7	protein-coding	3.51888728411896	3.74404372225823	3.69605736552149	3.8455027525641	3.87587725290826	4.15699329454778	3.73500863863376	3.79975713016822	0.52287117755268	0.263349012308463	0.575347935569068
Merged-chr7-64001776-4	chr7	64001672	64001872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62857.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	7.04815126919927	6.79678491017304	6.5484586306116	7.13898114172279	7.07956830260814	6.85928899475368	7.04860169871172	6.81177570072513	0.0608389499683211	0.783467582841809	0.915649203519514
Merged-chr4-133005444-4	chr4	133005333	133005533	+	738.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6073.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	4.36844058753356	4.29884985460419	4.01615434258389	3.91168614253927	4.42115570382442	4.94981414911211	4.51335223761383	4.60746119029226	1.12574348547964	0.00517103056665213	0.048699230577366
Merged-chr9-44326716-6	chr9	44326583	44326783	+	991.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007875)	promoter-TSS (NM_007875)	-162.0	NM_007875	13478.0	Mm.18353	NM_007875	ENSMUSG00000032123	Dpagt1	AU021132|Dpagt2|GPT|Gnpta	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	protein-coding	4.47930458604529	4.59294590967528	5.06529704458411	4.58287939768892	4.6387509984708	4.86719093519346	4.63166126858091	5.00188716683515	0.203470216198519	0.57714879454426	0.813924639099529
Merged-chr3-109425684-3	chr3	109425619	109425819	+	936.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	85036.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	2.87161180843865	2.79892902731557	3.10934593486725	2.57121895725837	3.97836686127256	3.67353099139391	4.11744478114195	3.64845036616688	4.33425304019931	1.85680378342682e-11	1.60589837789231e-09
Merged-chr11-34001899-3	chr11	34001781	34001981	+	933.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-8688.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	4.09443657760218	3.71958185513405	4.09509716740236	3.9024492609912	3.61911338181357	3.65530962748106	3.85467698927523	3.65669268844212	-0.763302674491594	0.101730981270082	0.350047264556928
Merged-chr5-147918509-4	chr5	147918414	147918614	+	824.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23699.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	4.26172789957122	4.12029812279584	3.68505517779836	3.97450472461018	4.30532139670555	4.43217806961742	4.28414174160834	4.07798016240719	0.647077961677819	0.128241130771188	0.398486842097221
Merged-chr6-71166960-4	chr6	71166854	71167054	+	808.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22574.0	NM_178413	232078.0	Mm.37547	NM_178413	ENSMUSG00000054474	Thnsl2	BC051244|TSH2	threonine synthase-like 2 (bacterial)	protein-coding	4.16298792	4.03382027792485	4.01998746317652	4.06245544663115	4.21161163785826	3.98085955483605	3.95223198388073	4.58011845790826	0.352854758958327	0.409844515038585	0.70525942551561
Merged-chr13-43547054-4	chr13	43546933	43547133	+	930.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081059, intron 6 of 8)	intron (NM_001081059, intron 6 of 8)	13158.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	4.65188174896461	4.74622226923258	4.04197364619826	3.95062041054391	4.05396101793885	4.67733328191142	4.02545056090207	4.5409468027691	-0.0927708271790632	0.846165310730454	0.941875968043083
Merged-chr12-57297114-1	chr12	57297014	57297214	+	622.0	f0_balb.idr	intron (NM_001164370, intron 1 of 9)	intron (NM_001164370, intron 1 of 9)	66689.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	3.32167906892887	3.15513368118033	3.63240076573527	3.46057449690213	3.10954930178434	3.37560492834442	3.18883694416787	3.58347047261563	-0.28658495274958	0.609320229024817	0.830965527033762
Merged-chr1-74702481-3	chr1	74702359	74702559	+	905.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-11076.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	3.67110891303931	3.43982401462002	3.67163186699186	3.90838547009376	3.62890759289162	3.29835429632189	3.49701267888615	3.76672361364473	-0.411605189174912	0.427386750394269	0.718543153891719
Merged-chr11-62821994-4	chr11	62821915	62822115	+	748.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053169, intron 1 of 5)	intron (NM_053169, intron 1 of 5)	1762.0	NM_053169	94092.0	Mm.117087	NM_053169	ENSMUSG00000047821	Trim16	9130006M08Rik|AI482483|EBBP	tripartite motif-containing 16	protein-coding	3.64309505386034	3.92217618866829	3.93906093724819	3.62102668839142	4.02611697179459	3.76176141541639	3.45431678016131	3.39985541635258	-0.264449861344163	0.611966698448766	0.832680684364583
Merged-chr19-11588344-4	chr19	11588239	11588439	+	800.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026835, intron 5 of 6)	intron (NM_026835, intron 5 of 6)	16465.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	4.01556759627046	3.89366382733552	3.82228221004175	3.86788297735859	3.98765402472853	3.83132356097275	4.08391967196959	3.71180405777068	0.0477058961891031	0.913634541984284	0.967602450027517
Merged-chr11-97415460-4	chr11	97415334	97415534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-34726.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	5.91993385994418	6.01530684530511	5.59447849566385	5.79818260102965	6.34157771665763	5.98070383820889	5.72641720652401	5.43910934202752	0.141410152819354	0.638376500003111	0.847153284197798
Merged-chr3-97994228-4	chr3	97994135	97994335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19303.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	5.36918321002353	5.46365126868551	5.47864640643824	5.44871087209658	5.06949807076067	5.36258440055413	4.83092145400163	5.18393324761256	-0.588795447015949	0.0489188327741175	0.228674551952823
Merged-chr19-7341313-2	chr19	7341213	7341413	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007928, exon 1 of 18)	5' UTR (NM_007928, exon 1 of 18)	547.0	NM_001080389	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	4.72700032751694	4.83680483782313	5.16390451238373	4.49464826954708	5.1255473690915	5.14027241126325	5.55060838465368	5.22039774151245	0.885668047551336	0.00966970753720604	0.0770800576117666
Merged-chr4-3647223-4	chr4	3647133	3647333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9273.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	6.96368309562177	6.87837024796102	6.96489965178454	6.97884440384151	6.6741062955088	6.74925365948571	6.94208855085272	6.86924451279187	-0.197252290139305	0.3104138343607	0.6225601620496
Merged-chr7-67372858-4	chr7	67372768	67372968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291191)	promoter-TSS (NM_001291191)	-10.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	6.95294020145825	6.98723088128834	6.65940993635147	6.77455432682487	7.35753984060389	7.40134612479892	7.2604784667123	7.08599217907992	0.599397291882847	0.00222758738227746	0.025409846519732
Merged-chr6-31215724-3	chr6	31215646	31215846	+	884.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	2728.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	3.30044737152673	3.3618627522687	3.30088762851915	3.36453294484763	3.32839859896197	3.16825121924184	3.05068707444723	3.12304478584133	-0.586041923971798	0.286032514745944	0.597615363323773
Merged-chr17-42449303-3	chr17	42449189	42449389	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355270, intron 2 of 2)	intron (NM_001355270, intron 2 of 2)	132689.0	NM_001355270	627626.0	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	4.48204307636134	3.86019158663491	4.42473387686203	3.53805219351672	6.42422324040546	6.21929566369118	6.52324609848111	6.32845715791022	4.5199332146627	2.76597230221216e-38	8.55996271735474e-35
Merged-chr9-107555282-4	chr9	107555188	107555388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019713, intron 1 of 4)	intron (NM_019713, intron 1 of 4)	705.0	NM_019713	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	6.61670096996379	6.41408740047304	6.1047555859216	5.99825839527207	6.51569483259769	6.74755455681832	6.56892230963646	6.79480173869583	0.536355356139061	0.0273203313397029	0.157480583071716
Merged-chr10-81484189-4	chr10	81484114	81484314	+	934.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1505.0	NM_001311124	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	4.50393443185603	4.45153959549383	4.01368846421024	4.1595198247979	4.67408151107728	4.82875884529702	4.48371956457337	4.6556064148651	0.849684858383159	0.0255968188118618	0.150924119135976
Merged-chr17-64590682-4	chr17	64590572	64590772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10977.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	6.7238680080531	6.44874212307049	7.25447656240263	7.3779411300031	7.10588621981265	6.44070479579142	6.74895777012268	6.35909969616957	-0.428855713042185	0.140382607012343	0.41658857602483
Merged-chr1-151572048-4	chr1	151571952	151572152	+	967.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	679.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	5.33799693656323	6.12525491112371	5.39901108553153	4.92438891804719	5.66619692517335	5.85995614221023	5.11458737686798	4.76771739438175	-0.172562452684096	0.679631342958685	0.868562901473288
Merged-chr5-120116472-4	chr5	120116366	120116566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028762)	promoter-TSS (NM_028762)	-47.0	NM_028762	74111.0	Mm.41022	NM_028762	ENSMUSG00000029594	Rbm19	1200009A02Rik|AV302714|NPO	RNA binding motif protein 19	protein-coding	6.81042246841896	6.71300005945176	5.9656454737479	6.34321872774192	6.96985364300963	6.75315195161693	6.77691777837606	6.70930557988744	0.451526749911402	0.0715413610870866	0.287178126596985
Merged-chr4-142071072-4	chr4	142070976	142071176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-13222.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	6.36235398840423	6.68819978260312	5.97772358901187	5.42447814659683	6.20409704891627	6.19873136329445	5.92438898170309	5.66960731382174	-0.265397435358832	0.432698752189775	0.722611204268057
Merged-chr6-29781961-4	chr6	29781867	29782067	+	977.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	13524.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	4.72891515800036	5.10756342126979	4.96319129713334	5.209975061714	5.26260685463989	5.13726669564863	4.66521517594827	5.15707241183842	0.0995911273577723	0.771423134349525	0.910379161490028
Merged-chr17-27825707-3	chr17	27825611	27825811	+	916.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-5169.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	3.30163620200896	3.30642188991858	3.58163315049962	3.59538103806215	3.69243034753193	3.53398020709649	3.51631889742528	3.3610592617763	0.248880094741059	0.629698592196745	0.842347605599926
Merged-chr4-148160129-4	chr4	148160006	148160206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176848)	promoter-TSS (NM_176848)	-12.0	NR_104374	230903.0	Mm.220327	NM_173401	ENSMUSG00000029001	Fbxo44	5730411K09|AV001623|FBG3|FBX30|Fbx6a|Fbxo6a	F-box protein 44	protein-coding	7.83647440105538	7.88683654694316	7.72700997078887	7.84845929255914	8.01408070596804	8.05247251974216	8.09501578409636	7.85504919473211	0.232031393856617	0.149672479025657	0.432035602283179
Merged-chr11-79962450-4	chr11	79962341	79962541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144826)	promoter-TSS (NM_144826)	-54.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	6.47653413577303	6.71316723272614	6.24037037843619	6.13313451515172	6.56082682678645	6.63663960299122	6.18831766681698	6.48956170094411	0.116148019935776	0.63893033313656	0.847409779354821
Merged-chr1-13206995-3	chr1	13206865	13207065	+	940.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 4 of 22)	intron (NM_008678, intron 4 of 22)	-79802.0	NM_001081209	383491.0	Mm.309380	NM_001081209	ENSMUSG00000042414	Prdm14	-	PR domain containing 14	protein-coding	3.2746592573862	3.09778566946263	3.22476400082504	3.22843450182552	2.75278736620029	2.83510411025507	2.86258742250269	2.80091521570826	-1.83932045323941	0.0038952660013101	0.0392554351843766
Merged-chr12-100022724-4	chr12	100022614	100022814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	58215.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	6.7318877767585	6.54293271390945	6.71907900464977	6.82680875163607	6.51201207950086	6.35968775929842	6.43704998548345	6.33937401290573	-0.432068878624239	0.0410790483668546	0.205003546498236
Merged-chr1-135146885-6	chr1	135146824	135147024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026823)	promoter-TSS (NM_026823)	90.0	NM_026823	68724.0	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	4.96348938371332	4.77882726234279	5.13497048449494	5.19571472233304	5.29549364841878	5.17492297315186	5.14109471511955	5.13145415503647	0.286013432085873	0.359371909378429	0.665266442591906
Merged-chr5-124354800-4	chr5	124354718	124354918	+	846.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013812)	promoter-TSS (NM_013812)	-190.0	NM_013812	13445.0	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	4.32060029704949	3.72230822873723	3.74795308883011	4.07356941096629	4.12116400170362	4.19081511076955	3.95196251082495	4.23916221873579	0.357510263683469	0.425823792975887	0.717219871278529
Merged-chr17-48264856-4	chr17	48264739	48264939	+	834.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172623, exon 2 of 6)	exon (NM_172623, exon 2 of 6)	544.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	4.51379731756912	4.61583380348544	4.83789708360264	4.24091335782562	4.31870003729631	4.7270079594077	4.57210108507543	4.07954168403935	-0.262713548130636	0.525178685399383	0.783229855070132
Merged-chr5-73255988-5	chr5	73255840	73256040	+	864.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028194, intron 1 of 62)	CpG	678.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	4.87046645727953	4.39724687938332	4.38154833370697	4.35335897501764	4.62759811344296	4.36305754884785	4.75232956023705	4.70290217516265	0.254206405356361	0.504066568056509	0.770626277304553
Merged-chr11-34032418-3	chr11	34032289	34032489	+	764.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-14539.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	3.60179384390355	3.52711214104172	4.0809709467987	3.75835742477859	3.53654331276482	3.83290337967935	3.84714860475973	3.76339731728068	-0.0362145546234654	0.940654496073452	0.978654793543509
Merged-chr1-125454682-4	chr1	125454604	125454804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18977.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	6.55665659036656	6.81029088785389	6.3692293946837	6.63432468284835	6.28943730091996	6.38944056123047	6.58624292763514	6.55313550158534	-0.22526006851969	0.312967750653543	0.624873399429149
Merged-chr5-97055819-4	chr5	97055699	97055899	+	965.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 9 of 15)	intron (NM_080708, intron 9 of 15)	55797.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	4.72129046725247	4.91177730959122	4.50865306379194	4.88937845731688	5.17515866385062	5.23453994730272	4.29150045955194	4.55132677420561	0.217073248901503	0.597188808851692	0.82517621232028
Merged-chr11-4594878-4	chr11	4594778	4594978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028860)	promoter-TSS (NM_028860)	-63.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	7.09713106347898	7.40948554856673	7.12207888984661	6.99713836609083	7.26667564272184	7.32220067374776	7.29090519094009	6.85715184321671	0.0510795731946727	0.806248743887514	0.925388685659427
Merged-chr16-57216612-3	chr16	57216518	57216718	+	675.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 2 of 17)	intron (NM_026254, intron 2 of 17)	14848.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	3.83027398387881	3.58910676415752	4.07284589059823	3.82004404747317	3.79252269407185	4.19768463806384	3.91632300459717	4.11354088587779	0.477819791372577	0.292813662858719	0.605244038466161
Merged-chr9-111271736-4	chr9	111271641	111271841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026810)	promoter-TSS (NM_026810)	-104.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	9.52475682343063	9.78903655168245	9.60455046530583	9.6552391703016	9.60825301180687	9.78737598566879	9.73669624615635	9.66600014780146	0.0632883963957893	0.647267267015482	0.851605116430591
Merged-chr8-26119313-4	chr8	26119212	26119412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207659)	promoter-TSS (NM_207659)	-56.0	NM_001357292	77733.0	Mm.291906	NM_029965	ENSMUSG00000013878	Rnf170	6720407G21Rik|AI481227	ring finger protein 170	protein-coding	8.08680116034491	8.53261794639844	8.16411436861477	8.00747769460404	8.20186082711	8.53509407905391	8.38458318506392	7.74799385534417	0.0458930906173279	0.831631736066522	0.93552984387709
Merged-chr3-108562455-4	chr3	108562359	108562559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026198)	promoter-TSS (NM_026198)	7.0	NM_026198	67495.0	Mm.32615	NM_026198	ENSMUSG00000068732	Tmem167b	2010200O16Rik	transmembrane protein 167B	protein-coding	8.5235166612836	8.71838633551994	8.37270550382723	8.1211997751254	8.48849499085261	8.55587901160652	8.3966634298568	8.4303485972277	0.027989271693017	0.876400311629132	0.953536292344201
Merged-chr4-136311374-2	chr4	136311274	136311474	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355182)	promoter-TSS (NM_001355182)	-224.0	NM_001355182	74326.0	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	3.83291992630812	3.64153596260011	3.93124015483374	3.78024676009179	3.85517814596094	3.78996816233099	3.76643173391483	4.14414739552755	0.287300643364538	0.523529170139054	0.782507755382099
Merged-chr6-71633000-4	chr6	71632871	71633071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173001)	promoter-TSS (NM_173001)	-54.0	NM_001362200	104263.0	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	8.28190892986849	8.23901084214804	8.2945528717659	8.28112965109994	8.33379624678352	8.44941765450637	8.38357752982564	8.28912028737171	0.113915317614894	0.438801162721357	0.726732530107543
Merged-chr11-75268054-4	chr11	75267934	75268134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177708)	TTS (NM_177708)	74041.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	5.67134116001399	5.72531351899255	5.43153621177237	5.56846415261716	5.30433060013914	5.27785206958354	5.69100607204872	5.6186846452927	-0.210283568397139	0.456000560410718	0.739405059331493
Merged-chr3-127572735-4	chr3	127572631	127572831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197997, intron 7 of 25)	intron (NM_197997, intron 7 of 25)	19242.0	NM_197997	71643.0	Mm.274884	NM_197997	ENSMUSG00000051278	Zgrf1	4930422G04Rik|AI448607	zinc finger, GRF-type containing 1	protein-coding	6.30231627741883	6.36456935176275	6.39960993973564	6.62400147738363	6.86224670728673	6.50146317588472	6.91156968280636	6.97726353159787	0.553880434674937	0.0132842274434311	0.0964559854326211
Merged-chr10-67290785-4	chr10	67290679	67290879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5498.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	5.75940577644909	6.11210245197279	5.93107831145373	5.93350790281821	6.00760488517782	6.25573981817276	6.00943737976572	5.92685756532483	0.171429400044781	0.482765063036623	0.757421686487144
Merged-chr7-138919220-4	chr7	138919117	138919317	+	888.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9711.0	NM_009760	12176.0	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding	4.16281360287159	4.16194612119348	4.11432962726823	4.66552617560629	4.25111939440329	4.33667068625631	4.23764847789392	4.25373483907128	-0.129076160579372	0.759446543867311	0.905638317712331
Merged-chr7-139944111-4	chr7	139943968	139944168	+	754.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009482, exon 1 of 2)	exon (NM_009482, exon 1 of 2)	212.0	NM_009482	22286.0	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	3.52919580322293	3.40364831802146	3.63597107645994	3.59418158023179	3.56854449433032	3.64586262606954	3.27669971778665	3.82261886939137	0.150019975016357	0.766758497675282	0.908716130899153
Merged-chr11-110563512-2	chr11	110563410	110563610	+	764.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	84170.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	3.49082156266104	3.1517376080518	3.54761071849717	3.91146837401236	3.8514553367435	3.48444661517779	3.63831637812541	3.59958565742329	0.266063904867209	0.634953224006818	0.845499285207272
Merged-chr5-137672113-4	chr5	137672022	137672222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303271, intron 1 of 12)	intron (NM_001303271, intron 1 of 12)	12631.0	NM_001303271	231801.0	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	6.5098077864086	6.29843349037453	5.99413545410064	5.94930612412467	6.04300173077915	6.59097584250675	5.7139283035893	6.18001596090068	-0.0539329571022474	0.85137426470054	0.94395961613626
Merged-chr5-92656389-4	chr5	92656312	92656512	+	937.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360020, intron 9 of 9)	intron (NM_001360020, intron 9 of 9)	18715.0	NM_001360018	320696.0	Mm.209991	NM_177230	ENSMUSG00000050050	Ccdc158	4932413O14Rik	coiled-coil domain containing 158	protein-coding	4.96291542124498	4.37723648231537	4.93270500964686	4.80172922557449	4.56136394222456	4.61588547438483	4.3238035163928	4.68736706483845	-0.498841650009066	0.18277054612486	0.479460757430375
Merged-chr5-140610502-3	chr5	140610378	140610578	+	855.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008494, intron 1 of 7)	intron (NM_008494, intron 1 of 7)	3137.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	3.33709014462388	3.25678305832062	3.83065285183609	3.19268772533745	2.89161291408491	3.14297513200989	3.02042147108332	3.09598933108306	-1.52088778666567	0.0136437133663816	0.0982046590864271
Merged-chr7-127297996-2	chr7	127297896	127298096	+	996.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253873, intron 2 of 30)	intron (NM_001253873, intron 2 of 30)	1736.0	NM_001253874	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	2.9353493803064	2.60814590403516	2.7646591478871	2.21921398847358	2.69484457882061	2.87569113718519	2.4880905648161	2.49422584751994	-0.0667286374774066	0.930645779856887	0.975042479384635
Merged-chr15-99421360-4	chr15	99421228	99421428	+	944.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001001884)	TTS (NM_001001884)	28109.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	5.1199056160931	5.19921672298727	4.65699420698236	4.79396393501936	4.77385222791995	5.06531304948651	4.67762789561391	4.85254360377742	-0.221881750652085	0.52421418597482	0.782789831107843
Merged-chr9-44268204-4	chr9	44268117	44268317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163743)	promoter-TSS (NM_001163743)	-30.0	NM_001163743	270151.0	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	6.08007105077421	5.86481014104943	5.55112191834999	5.74556548612658	5.8140759901306	6.15289343354141	6.01022742548398	5.88610139505538	0.233566118424168	0.369860011040972	0.674064566926602
Merged-chr13-8839355-4	chr13	8839222	8839422	+	964.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039388, intron 9 of 13)	intron (NM_001039388, intron 9 of 13)	31722.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	4.47565281729027	4.16182565632802	5.07684220472303	4.68058248228611	4.7469768188415	4.41328754849724	4.54249391434354	5.07324146929394	0.169609369005731	0.6863887154632	0.871787672169905
Merged-chr3-37748169-4	chr3	37748046	37748246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23786.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	6.29594237579583	6.15291971357475	5.69319639732306	5.6740200562843	5.63816759616864	5.67660724292922	5.50009540206019	5.46379088009023	-0.655868039214425	0.023746019894803	0.143360301110448
Merged-chr13-6906186-4	chr13	6906108	6906308	+	986.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-257437.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	5.77655659650915	5.10826960791854	5.77758510985352	6.18184652864256	5.12202392704395	5.14273524651292	5.74782608431843	5.18611777173174	-0.772007331083045	0.0305016137735842	0.169047291660044
Merged-chr13-75832909-2	chr13	75832809	75833009	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6976.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	2.30484039537125	2.39850653742334	2.3050063796307	2.17007745534183	3.02714616845866	2.91429802124215	2.72893554096824	2.96575392033905	3.75257466382192	1.23159567939899e-06	4.23496371323386e-05
Merged-chr9-123951346-4	chr9	123951229	123951429	+	763.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17363.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	4.38163167187927	4.22589881812233	3.97956765132777	4.5211818086645	3.83765173577147	3.87191458535032	4.06328464937748	4.25902566598185	-0.746034666493615	0.0907251197848271	0.329055964390533
Merged-chr6-28723197-1	chr6	28723097	28723297	+	755.0	f0_balb.idr	intron (NM_019776, intron 13 of 23)	intron (NM_019776, intron 13 of 23)	108550.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	3.22274095316456	3.11404510700447	3.38470951370501	3.29996703167067	3.12751370196958	3.0774582114499	3.26680314627805	3.27771797450677	-0.272863369068771	0.618138175365827	0.835863676650469
Merged-chr16-32434294-4	chr16	32434199	32434399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163160, intron 1 of 8)	intron (NM_001163160, intron 1 of 8)	3069.0	NM_001163160	13026.0	Mm.98775	NM_009981	ENSMUSG00000005615	Pcyt1a	CTalpha|Cctalpha|Ctpct|Cttalpha	phosphate cytidylyltransferase 1, choline, alpha isoform	protein-coding	6.13564008117603	6.41228892116597	5.81060596645123	6.31223167668807	6.26551150383393	5.76172420634452	6.6445145101371	6.21190370429163	0.100486061222767	0.721839854400563	0.888962841966766
Merged-chr5-145177868-3	chr5	145177759	145177959	+	759.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291249, intron 6 of 7)	intron (NM_001291249, intron 6 of 7)	10646.0	NM_001291248	54188.0	Mm.196884	NM_178576	ENSMUSG00000029625	Cpsf4	30kDa|C79664	cleavage and polyadenylation specific factor 4	protein-coding	3.38526560508629	3.11127726244744	2.91302915996511	3.0203136380588	3.14216662510598	3.15836939614838	3.32118155717309	3.16911671187071	0.329304651384686	0.562590735142926	0.805707247859895
Merged-chr6-51523990-4	chr6	51523880	51524080	+	967.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127349)	promoter-TSS (NM_001127349)	77.0	NM_001127349	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	4.96159734310081	4.77085507244512	4.99582393458084	5.03625827622081	4.73589186641416	5.16715000604266	4.59388260205862	4.88959562753136	-0.186943935642066	0.582276485105223	0.816506263461479
Merged-chr17-73027300-4	chr17	73027200	73027400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80685.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	6.54372912180065	6.33700703516537	6.84235613293581	6.90632001842517	6.52716766350585	6.04413359110319	6.34116115512516	6.33208652719157	-0.51789864278252	0.0366006401363755	0.190438374580926
Merged-chr16-93883842-4	chr16	93883751	93883951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028083)	promoter-TSS (NM_028083)	-50.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	8.31516125868212	8.30576098593649	7.55760456118839	7.89336353422764	8.46964680254781	8.71009196605216	8.3770903129204	8.30557727878435	0.533863227503643	0.0118942806329886	0.089315645234254
Merged-chr8-3481093-2	chr8	3480993	3481193	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029598, intron 4 of 8)	B1_Mur4|SINE|Alu	10231.0	NM_029598	76406.0	Mm.74996	NM_029598	ENSMUSG00000040340	Tex45	1700019B03Rik	testis expressed 45	protein-coding	2.49363636650425	2.60526830039468	2.33889785798732	2.40941314970558	2.65613229616922	2.86895359115417	2.74841400210666	2.92621627401874	1.71720997100264	0.0114950819309726	0.0870917716168665
Merged-chr13-113601303-4	chr13	113601204	113601404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	17260.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	8.1680090182185	8.16934038207769	8.06700592869498	7.87384345570598	7.56830564946809	7.87497912361875	7.77226571719639	7.40948730771864	-0.525863286568739	0.00449162220125772	0.0438945446863677
Merged-chr17-87023625-4	chr17	87023502	87023702	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008838, intron 2 of 5)	intron (NM_008838, intron 2 of 5)	1799.0	NM_008838	18701.0	Mm.219685	NM_008838	ENSMUSG00000024145	Pigf	-	phosphatidylinositol glycan anchor biosynthesis, class F	protein-coding	5.57120442569331	5.08977924699827	5.7723845761758	5.63588998477983	6.69819606398562	6.37395304751119	6.69664900503869	6.43434994569444	1.57474842510154	3.41914132716475e-09	1.98670253490824e-07
Merged-chr6-100272195-4	chr6	100272119	100272319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019743, intron 2 of 4)	intron (NM_019743, intron 2 of 4)	15139.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	5.43043408323717	6.00141088090787	5.99481211477466	6.39178729117545	6.01486639214872	5.70913866781596	6.0873058761381	6.24477715774575	0.0175654770297426	0.953573490272604	0.983444766711298
Merged-chr18-36792366-3	chr18	36792258	36792458	+	862.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001305627, exon 12 of 12)	3' UTR (NM_001305627, exon 12 of 12)	-1565.0	NM_025594	66492.0	Mm.251155	NM_025594	ENSMUSG00000001383	Zmat2	2610510D14Rik|2900082I05Rik	zinc finger, matrin type 2	protein-coding	4.11105690851616	3.89753622701359	3.74696496051937	4.10147765670026	3.66033037823642	3.56789884666676	3.50462079193806	3.74486266140919	-1.06487247932316	0.0254535034502598	0.150353105567306
Merged-chr17-37051920-3	chr17	37051820	37052020	+	832.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019439, intron 6 of 22)	intron (NM_019439, intron 6 of 22)	5954.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	4.08814183305494	4.1746777759731	3.9846059851207	4.51703485639862	4.5375452138796	4.16129905357982	4.12034086001251	4.27217210262726	0.15822283552464	0.715124321783469	0.886010584897636
Merged-chr15-103272738-4	chr15	103272621	103272821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357748)	promoter-TSS (NM_001357748)	-167.0	NM_019817	56447.0	Mm.29473	NM_019817	ENSMUSG00000060992	Copz1	5930435A22Rik|AA407760|D4Ertd360e	coatomer protein complex, subunit zeta 1	protein-coding	8.78930174717555	8.91353956156281	8.75348477099709	8.72191204878096	8.86943729121842	8.94796652746684	8.87101137807772	8.68790558964442	0.0653029672031607	0.657709926364701	0.857477983748052
Merged-chr6-87552065-3	chr6	87551964	87552164	+	752.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18805.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	3.04222494579679	3.4193333582599	3.24085064983714	3.0767766345137	3.35401203199827	3.41517720803529	3.64048918029776	3.41147648370037	0.92530357420515	0.0846129159172388	0.316549077161418
Merged-chr13-102683954-4	chr13	102683850	102684050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9597.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	5.14133433457472	5.48316155058687	5.36242459687228	5.62124242032032	5.20342380625786	5.21274006778968	5.33574035873345	5.20553630221771	-0.347765688103177	0.240741708997042	0.551325700740017
Merged-chr16-30686722-4	chr16	30686671	30686871	+	894.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	87048.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	4.41043616560853	4.22243512963394	4.23557038316681	3.90674230899089	4.79144266387491	4.45546798220066	4.21701030526959	4.27908970023068	0.657893980680141	0.116031281378745	0.376830340706196
Merged-chr5-72601254-4	chr5	72601163	72601363	+	935.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31_Mur|LTR|ERVK	-13713.0	NM_001024147	545758.0	Mm.332426	NM_001024147	ENSMUSG00000060204	Gm5868	EG545758	predicted gene 5868	protein-coding	4.91204112569198	5.15261085470865	5.04796635602212	5.03886674103541	4.91886220735638	4.72456987712758	4.61468293633289	5.04451120546494	-0.399703830305565	0.223719024797118	0.531827521693895
Merged-chr16-32666425-4	chr16	32666329	32666529	+	858.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033493, exon 2 of 3)	non-coding (NR_033493, exon 2 of 3)	1768.0	NR_033493	675921.0	Mm.404316	NR_033493	ENSMUSG00000075265	Tnk2os	Gm10818	tyrosine kinase, non-receptor 2, opposite strand	ncRNA	4.24922756122522	4.47123406308647	4.38379141504311	3.92270665839478	4.2157430588522	4.63649767664025	4.40494331751191	4.4226262189366	0.388870820091297	0.344082237841223	0.652610656810439
Merged-chr6-16857235-3	chr6	16857133	16857333	+	952.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 2 of 6)	intron (NM_031198, intron 2 of 6)	41208.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	3.67753273044449	4.18767772954517	3.87811293376592	4.04336607483688	3.39854495684787	3.90386176114961	3.14925837065842	3.3053296551082	-1.55714164093675	0.00688093198049967	0.0601618790615386
Merged-chr2-138256640-4	chr2	138256541	138256741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025431)	promoter-TSS (NM_001025431)	57.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	6.02837053799735	5.5785542824001	6.26929975391354	6.07002335098181	5.4663281831573	5.77492173864478	5.77786193603528	5.89676251057159	-0.451691501231633	0.107509556861053	0.361596709531563
Merged-chr1-119463584-2	chr1	119463484	119463684	+	702.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	41198.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	3.03518672123789	3.06051642712116	3.28196767222554	3.02177809107409	3.39365642784449	3.45152670550978	3.15318345981672	3.38763127678356	0.954353884225678	0.0780774949561624	0.302233373015422
Merged-chr10-75589281-4	chr10	75589156	75589356	+	889.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011820)	promoter-TSS (NM_011820)	-125.0	NM_011820	23887.0	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	3.77390141292887	3.68512155598335	4.48123194638918	3.86382361886348	3.92392068527365	3.83827265357674	3.86484487109876	3.87880223643514	-0.292484034426088	0.545641104494373	0.795970987775933
Merged-chr4-40157930-1	chr4	40157830	40158030	+	572.0	f0_c57.idr	intron (NM_007386, intron 1 of 20)	intron (NM_007386, intron 1 of 20)	14665.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	3.54984127837866	4.1248620133253	3.55033431716149	2.93492663992073	3.93182839933607	3.72731269869553	3.3548581814859	3.5483401914775	0.118347086495527	0.848823141601573	0.942888080090802
Merged-chr6-54143542-4	chr6	54143437	54143637	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	103605.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	5.48867899449926	5.30801396824924	5.46233143956975	5.64832238820008	5.38796318373592	5.06132390084589	5.3203336708006	5.63800399655599	-0.213012301442588	0.47253349343567	0.750668694577904
Merged-chr8-40862456-5	chr8	40862412	40862612	+	975.900024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001044740, exon 1 of 12)	5' UTR (NM_001044740, exon 1 of 12)	145.0	NM_001044740	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	3.56880414088339	3.61089888991671	3.6340039592977	3.01938464407722	4.4308219444363	4.28461345070184	4.21625517138557	4.38579555767515	2.57187503105973	1.87164637795541e-07	7.59532027003922e-06
Merged-chr8-18946050-4	chr8	18945970	18946170	+	818.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176951, intron 2 of 6)	intron (NM_176951, intron 2 of 6)	4801.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	3.57563899625067	3.81880925321418	3.79567493873489	3.97497098865565	3.76912743219813	3.9149345375071	3.87605207375813	3.57430027119622	-0.0666905326055479	0.887146600169595	0.957666791297499
Merged-chr11-115564317-4	chr11	115564248	115564448	+	961.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001002929)	promoter-TSS (NM_001002929)	-96.0	NM_001002929	445007.0	Mm.4379	NM_001002929	ENSMUSG00000020739	Nup85	Pcnt1|frount	nucleoporin 85	protein-coding	4.88324269897296	4.56910746976634	4.81603456943079	4.4593717284861	4.63638614067105	4.80192079282214	4.48017957952598	4.84721594063198	0.0408912637495069	0.909880695953751	0.966575100849084
Merged-chr6-128143689-4	chr6	128143627	128143827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175414)	promoter-TSS (NM_175414)	-149.0	NM_001356301	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	6.79682024565172	6.65160771224154	7.39682500858491	6.54148775037335	6.38120964867863	6.79545233802179	6.64677683111509	6.88732543628397	-0.278700068866521	0.292586624853789	0.604950426145003
Merged-chr7-5125357-5	chr7	5125299	5125499	+	941.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009028, exon 1 of 1)	exon (NM_009028, exon 1 of 1)	551.0	NM_009028	19428.0	Mm.322186	NM_009028	ENSMUSG00000083649	Rasl2-9	M2|Ran|Ran/M2|Rasl2-9-ps	RAS-like, family 2, locus 9	protein-coding	4.04531171381744	3.61407553835673	3.95655230505055	3.20859004158396	3.97938371456258	3.76461668783021	3.89207534990294	3.99947443481059	0.499972691804313	0.338975978048396	0.648223242193853
Merged-chr11-110420717-4	chr11	110420612	110420812	+	956.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	21610.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	4.3489301058895	4.27625814982135	4.26285510465031	4.25189258854725	4.40387492307746	4.08438406213586	4.52172560088831	4.11823523599953	0.0483160755421892	0.902747494999559	0.963902973862167
Merged-chr3-9796226-2	chr3	9796126	9796326	+	580.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	37453.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	2.96417701372324	3.00419127902362	3.48747238607181	3.14374027165408	3.19044863323904	3.27516056977844	3.2675502185634	3.43672236862381	0.481134334490425	0.397676979913333	0.695998272762507
Merged-chr17-74394946-1	chr17	74394846	74395046	+	742.5	f0_balb.idr	promoter-TSS (NM_144798)	promoter-TSS (NM_144798)	-662.0	NM_001252478	210148.0	Mm.243943	NM_144798	ENSMUSG00000024069	Slc30a6	9530029F08Rik|ZnT6	solute carrier family 30 (zinc transporter), member 6	protein-coding	3.41757539771462	3.3814133515113	3.24917350245417	3.35251006791689	3.26986441921358	3.23250496150031	3.4043654308693	3.36240211718913	-0.123285215596447	0.811911635478242	0.927327636420183
Merged-chr5-64900432-4	chr5	64900333	64900533	+	958.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32266.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	4.43141186416141	5.11576923772751	4.61597043045964	5.04525101222623	4.88059327908994	4.8737371225089	4.86250097103398	4.696052074242	-0.0388221828190774	0.91573846349187	0.968763998229684
Merged-chr3-137955682-4	chr3	137955594	137955794	+	987.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	MIR|SINE|MIR	25855.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	5.90151435891247	5.99222872431618	5.81220888031477	5.62368628164426	5.80973919974222	6.07610644716834	5.43694648197376	5.36471340851339	-0.206853901480519	0.47944003755407	0.75518516526281
Merged-chr15-5708650-4	chr15	5708546	5708746	+	928.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	212328.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	5.02505914572523	4.58629359647825	4.47351294435422	4.81967706402793	4.79904027611167	4.69494259808548	4.66363088558535	4.68240581858455	-0.0681876764389728	0.847175212099981	0.9422142432572
Merged-chr5-105868810-2	chr5	105868710	105868910	+	868.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7758.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	2.75158875931234	2.9095315080062	2.95584827032628	2.57461288866854	2.99900204914871	3.35442850229389	3.06384476782331	3.01586469335431	1.37087245946295	0.0269080264754644	0.155947005160655
Merged-chr2-181693811-6	chr2	181693687	181693887	+	918.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291208)	promoter-TSS (NM_001291208)	23.0	NM_001291206	56470.0	Mm.274366	NM_026446	ENSMUSG00000002458	Rgs19	2610042F04Rik|AI324841|AW547781|GAIP	regulator of G-protein signaling 19	protein-coding	7.02213161186359	7.16794601796218	7.58628953342981	7.03315196590671	6.9282167856874	7.06940798723338	7.0002646780454	6.81584092613225	-0.358569330622433	0.0951016249516676	0.337405258370032
Merged-chr12-39039950-4	chr12	39039840	39040040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	256229.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	5.79857854248541	5.59425304732112	6.41048697451746	6.72003498018639	5.72016213613833	5.34752583002834	6.19373562949705	5.93892829271706	-0.601153119315617	0.0874973455855954	0.322542522214361
Merged-chr11-102467240-4	chr11	102467136	102467336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010575, intron 4 of 29)	CpG	2647.0	NM_010575	16399.0	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	7.01657569118249	7.10585813710811	6.99306641524943	7.06793132633736	7.05822085369854	6.86073071994078	7.01845635587129	6.66224349824351	-0.183620854549644	0.352888954633861	0.659776233521658
Merged-chr16-91475926-3	chr16	91475835	91476035	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16|LTR|ERVK	-9280.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	7.23543236293917	7.25193416872422	6.87185848763787	7.34934089776868	4.27262487048989	4.65055668263513	4.7622317181816	4.67274888460182	-4.78947665948375	1.80437075577762e-40	7.13518366808305e-37
Merged-chr9-120043328-4	chr9	120043223	120043423	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19725.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	6.30786976166134	6.03793580867448	6.5504087442024	6.09288810115182	5.41843528740287	6.00484609754445	5.61543650301177	5.24979556733001	-1.06168362213088	0.000290765279266664	0.00494773650798993
Merged-chr10-78244156-4	chr10	78244075	78244275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081055, intron 1 of 22)	CpG	467.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	5.61555345372096	5.79692052396738	5.56566297752266	5.19403508567221	5.68908166010394	5.45225817106531	5.03899796326833	5.36573828494305	-0.230363840936555	0.472111047360594	0.750366028940686
Merged-chr11-83753741-4	chr11	83753630	83753830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145432)	promoter-TSS (NM_145432)	93.0	NM_145432	217026.0	Mm.117874	NM_145432	ENSMUSG00000000976	Heatr6	2700008B19Rik|BB135312|BB249351	HEAT repeat containing 6	protein-coding	5.61036991019575	5.79831550045623	5.21221423787979	5.62816797081436	5.76371172460707	5.35690669445793	5.73111615327651	5.9308503921951	0.217676715629804	0.454014668319695	0.737865837302271
Merged-chr10-62792370-4	chr10	62792259	62792459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026201)	promoter-TSS (NM_026201)	9.0	NM_026201	67500.0	Mm.196371	NM_026201	ENSMUSG00000020074	Ccar1	2610511G16Rik|9430036H15Rik|Carp1	cell division cycle and apoptosis regulator 1	protein-coding	8.10784901780414	8.39004269509369	8.05707277896198	8.09161801438771	8.20763532259288	8.28029688423945	8.05796420327645	8.2930489600335	0.0560725005509923	0.736420029502846	0.895993666633144
Merged-chr9-25570522-4	chr9	25570423	25570623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	88926.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	8.369080723999	8.35380410134969	8.28474069150991	8.40492565068669	7.94529208594157	7.78832071860634	8.12994498750879	8.10722639105245	-0.455009222827128	0.00482314625565972	0.046292708647735
Merged-chr17-78402068-4	chr17	78401967	78402167	+	878.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 4 of 9)	intron (NM_001360407, intron 4 of 9)	16085.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	4.29464529408891	4.34151370946353	4.57742080238731	4.77125478311138	4.11463375640559	4.27890168001194	4.44327662427489	3.87178444509712	-0.794988896245563	0.0605886211621511	0.260068985812033
Merged-chr3-13471687-4	chr3	13471574	13471774	+	891.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178631)	promoter-TSS (NM_178631)	19.0	NM_001357035	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	4.88798697329864	5.23388340979354	5.62670990279491	5.18233349953606	4.51675393264784	4.78112729109862	4.82789593448735	4.59598907221661	-1.15052751649303	0.00113643437269022	0.0149133964258328
Merged-chr11-29190579-1	chr11	29190479	29190679	+	572.0	f0_balb.idr	intron (NM_134034, intron 4 of 15)	URR1A|DNA|hAT-Charlie	17672.0	NM_134034	104570.0	Mm.276386	NM_134034	ENSMUSG00000020463	Ppp4r3b	AW011752|AW557776|Smek2|mKIAA1387	protein phosphatase 4 regulatory subunit 3B	protein-coding	3.08049401025387	2.97953260493419	3.49761334639806	3.16966569353558	2.86586933630944	2.9906662676414	3.12920190666085	3.19683178732494	-0.58102296158298	0.334525518751478	0.645068635248264
Merged-chr15-91178833-4	chr15	91178737	91178937	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011994, intron 4 of 9)	intron (NM_011994, intron 4 of 9)	13170.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	5.36476033809914	4.87499490902149	5.70257952699588	5.94800424607375	5.45855165736599	5.20842136072735	5.1485180923044	5.41994537326544	-0.399219048030059	0.259580487810848	0.571396571681358
Merged-chr3-95661017-3	chr3	95660906	95661106	+	928.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008562, exon 3 of 3)	3' UTR (NM_008562, exon 3 of 3)	2285.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	2.98280811338948	3.143214257916	2.98315344025404	2.80631553940878	3.08231121722592	3.0931351662126	3.35613229554768	3.10493745410398	0.758820169103089	0.188569993047852	0.487212731320668
Merged-chr14-65358943-2	chr14	65358843	65359043	+	935.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199029, intron 1 of 9)	CpG	267.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	3.95025092217925	3.42703760956822	3.81520964912784	3.3504479509522	3.72241068879396	3.60889011365009	3.59423549130833	3.90476754203292	0.201284663308655	0.695234951135419	0.876486356770318
Merged-chr9-24510674-4	chr9	24510575	24510775	+	902.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7535.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	4.51489884085414	4.2476995127763	4.26981535519381	4.92511608051618	4.21681963564635	3.90644401420275	4.05849733774134	4.22123769052482	-1.03230810944985	0.0193201809730637	0.125005617089521
Merged-chr2-76088700-3	chr2	76088596	76088796	+	840.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081033, intron 10 of 19)	intron (NM_001081033, intron 10 of 19)	-106729.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	3.44773013782138	3.31558527104169	3.49834893782939	3.45110820307657	3.03998550833896	3.06565317893637	3.38227356924078	3.22372378068874	-0.932652605558755	0.0920866878532125	0.331880271178644
Merged-chr1-13648069-4	chr1	13648014	13648214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145381, intron 2 of 6)	intron (NM_145381, intron 2 of 6)	12395.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	7.3294176733507	7.0750464112214	7.3986940990217	7.89307143624634	6.86664772381024	6.87356341066319	6.93981069860141	7.07196033180987	-0.727679417694382	0.00170181786336965	0.0206044724777663
Merged-chr6-55056237-3	chr6	55056125	55056325	+	885.211121	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_180678, intron 7 of 16)	MER3|DNA|hAT-Charlie	18224.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	3.16317839446155	2.92886542065412	3.01214358604466	2.71202038586547	4.01452295651186	3.60805962149962	3.81562089574552	4.07094591289292	3.60556980312597	3.76510714297757e-10	2.62484389157689e-08
Merged-chr13-44718442-4	chr13	44718348	44718548	+	923.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12326.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	4.72220259734837	4.58543368332389	4.60386274139971	4.75402713150727	4.63153666052509	4.73670009911231	4.93941811692118	4.75717126837958	0.191094202596083	0.573936872940677	0.811973307930812
Merged-chr7-130519611-4	chr7	130519489	130519689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136054)	promoter-TSS (NM_001136054)	-9.0	NM_013799	11907.0	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	7.71080879237019	7.85984325013899	7.95887781486456	7.64952293820799	7.89773633715016	7.8216616826481	7.76973765124944	7.89094594794396	0.0705007059312407	0.676275480919727	0.867092001375939
Merged-chr6-127254146-4	chr6	127254043	127254243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53824.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	7.71546993639957	7.70851355565698	7.68405393210469	7.90699481177339	7.63577611685923	7.58458859160995	7.80172001809162	7.60194254257688	-0.139109149628559	0.415563175891012	0.709797021974572
Merged-chr1-131252763-4	chr1	131252736	131252936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7658.0	NM_018750	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	5.39159877026874	5.85372294638116	6.07167262065834	5.23955136282629	6.11068825982723	6.05788797155098	5.83016721854892	5.9448227042391	0.525775701185347	0.0805701459939227	0.307896356216376
Merged-chr12-3667026-4	chr12	3666904	3667104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 8 of 17)	L1M4|LINE|L1	94020.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	6.16689707081215	6.1378710011304	6.42917226461132	6.53511917053357	5.6214871400526	5.64474840714733	5.88096011945214	6.08367235326056	-0.817133752454426	0.00168210723426461	0.0204214072706328
Merged-chr15-58214995-4	chr15	58214882	58215082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026346)	promoter-TSS (NM_026346)	-90.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	6.45124609450673	6.37446414856812	6.52060785618748	6.82967000908412	6.28889317367945	6.48166915128256	6.48724279075229	7.03732358103073	0.0477482895401798	0.853063214321579	0.944678751070911
Merged-chr3-69264373-2	chr3	69264278	69264478	+	946.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	41959.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	3.509555093381	3.13601753364974	3.3154275647445	2.77794493486179	3.11951716161891	2.99408850278998	2.80120862513255	3.31341582896316	-0.537528478316239	0.412373088638494	0.707537751397753
Merged-chr6-38950038-4	chr6	38949944	38950144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 2 of 12)	intron (NM_011539, intron 2 of 12)	31058.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	6.04065764134652	6.89328171960108	6.39292658522234	6.43922323012681	6.55674428769897	6.51455617348495	6.63342719627672	6.4239197470748	0.0768426499681338	0.759287793980482	0.905555207394804
Merged-chr11-101952931-4	chr11	101952819	101953019	+	992.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045806, intron 1 of 3)	intron (NR_045806, intron 1 of 3)	498.0	NR_045806	73887.0	Mm.159084	NR_045806	ENSMUSG00000071818	4930417O22Rik	-	RIKEN cDNA 4930417O22 gene	ncRNA	5.5891050063853	5.56495320120973	4.98322654497625	5.87238899440157	5.46091669377374	5.16539816757747	5.72697301642864	5.33398516798648	-0.201459977620566	0.544387539412257	0.795184841840149
Merged-chr4-144904170-4	chr4	144904050	144904250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	11013.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	7.47409735870414	7.31556100468747	7.62372212806354	7.81910234550373	7.18594852950789	7.16055106307774	7.38170284455214	7.23666619536314	-0.453075701400451	0.0210999441768094	0.132657900817307
Merged-chr6-134205329-4	chr6	134205229	134205429	+	829.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	169629.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	4.77619356635661	4.5308775789155	4.59926135129233	4.90230315585837	4.25206137410542	4.273437345189	4.4587360167457	4.19680899726087	-0.975130808218499	0.0101004367505252	0.0794934749519715
Merged-chr17-35590621-3	chr17	35590524	35590724	+	760.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23139.0	NM_175148	69542.0	Mm.265291	NM_175148	ENSMUSG00000039269	2300002M23Rik	Stg|emprin	RIKEN cDNA 2300002M23 gene	protein-coding	3.95125803217034	4.2372880322542	3.63619613453482	3.60144066433264	3.18124757628068	3.10956669519302	3.06396377967212	3.07143289804958	-2.92338650205704	8.39629720819003e-06	0.000235569585723988
Merged-chr19-17253012-3	chr19	17252903	17253103	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86502.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	3.61218118736997	3.34849812541052	3.68246736034419	2.94274254871481	4.85614744288157	4.59303887666014	4.96360378388707	4.73162287919326	4.08665501624616	1.26513963389381e-16	2.61777250002695e-14
Merged-chr11-78345975-4	chr11	78345875	78346075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313987)	promoter-TSS (NM_001313987)	391.0	NM_001313988	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	6.56215968276584	6.56623651756055	6.30514826107534	6.25566240288162	6.37672569954114	6.65791647325808	6.44987697251123	6.39255607013708	0.0713850811604757	0.750393488674846	0.901747852063193
Merged-chr12-112589558-2	chr12	112589458	112589658	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 1 of 22)	intron (NM_198411, intron 1 of 22)	774.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	3.8647156792549	4.26487167530267	3.65082229392236	3.47826503706199	3.88867912475472	3.98758152592168	3.79890787513372	3.58948627249839	-0.0607390151267639	0.905245749134387	0.964833672905329
Merged-chr13-112308923-4	chr13	112308856	112309056	+	739.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168404, intron 2 of 7)	intron (NM_001168404, intron 2 of 7)	20438.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	3.15533218454696	2.9960246519688	3.41710004976969	3.22560065728592	3.09675735846786	3.00746139754142	3.19995802055168	2.96746840041077	-0.529802365401964	0.361125271507089	0.666438571444207
Merged-chr7-80059341-4	chr7	80059174	80059374	+	908.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	15983.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	4.33586386189275	4.59576531312636	4.33652738685167	5.00566292415016	4.38861844602794	4.15998736081699	4.12610905643225	4.28817438480445	-0.860843121033523	0.0418193267667929	0.207187155281795
Merged-chr16-35902544-4	chr16	35902454	35902654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31172.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	7.40941039408551	7.6409390023005	7.30154997278989	7.05512039461096	7.22775668497845	7.28896322911559	7.24427858606037	6.92533535485916	-0.245301699359055	0.247479365013278	0.558631710344087
Merged-chr6-86822690-3	chr6	86822515	86822715	+	930.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26825.0	NR_028298	67170.0	Mm.119489	NR_028298	ENSMUSG00000100164	2610306M01Rik	-	RIKEN cDNA 2610306M01 gene	ncRNA	2.99039242422048	2.9366479383715	2.99078370552011	2.9908381892683	2.73019554974601	2.90922945479162	2.72600327071709	3.10067140948448	-0.46916399857916	0.447409744047551	0.732955376914558
Merged-chr15-53343348-4	chr15	53343257	53343457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	2826.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	7.46210881517351	7.82093178519657	7.88690759929914	8.15469623547757	7.72019673431581	7.47145951869775	7.73856538805459	7.52508994711609	-0.319653667277375	0.117423910192374	0.379001337848953
Merged-chr6-136964796-4	chr6	136964626	136964826	+	982.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10203.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	3.7221470040426	3.72684694341251	3.54590387399667	3.84460816288293	4.36520157403873	3.89666636292068	3.86195369919308	3.72061958343013	0.770177804521831	0.110325498883487	0.366801750900448
Merged-chr9-114763544-2	chr9	114763444	114763644	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252479, intron 1 of 3)	intron (NM_001252479, intron 1 of 3)	18449.0	NM_133978	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	3.16544608510685	2.89012752446979	2.90579415498873	3.00721946041914	3.16872886415037	3.33718100347371	3.41601118605109	3.27699410298484	1.17086275173493	0.0367944784196307	0.191055892867734
Merged-chr6-85069455-4	chr6	85069350	85069550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177077)	promoter-TSS (NM_177077)	63.0	NM_177077	75914.0	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	6.50474824768758	6.41484973552901	6.9605477423842	6.74861849159423	6.13125071029309	6.46647693212318	6.36923986359233	6.51774235244758	-0.447264791522617	0.059717686430716	0.25767732798569
Merged-chr4-98465642-4	chr4	98465533	98465733	+	859.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005784, intron 16 of 19)	intron (NM_001005784, intron 16 of 19)	54606.0	NM_001355177	12695.0	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	3.86866780499992	3.67655340979132	3.81993116778289	3.92562872349571	3.91498387324132	3.59291150306173	4.06970317654735	3.71338748323742	0.0289565031285293	0.950264077353504	0.982223353062531
Merged-chr11-104003664-4	chr11	104003579	104003779	+	893.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	36808.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	4.07264622514071	4.2841156096373	4.29569530583082	4.01884887748095	3.94728410342277	3.98477330985742	4.23484184945164	4.20868587221068	-0.179708237457462	0.666594010579313	0.862079457770231
Merged-chr17-35240632-4	chr17	35240545	35240745	+	852.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1101.0	NM_019693	53817.0	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	3.85758825097001	3.93268271168038	3.5358259638634	3.37885550614482	3.90840738106002	3.93091366123566	3.52301649432532	3.80742284453882	0.344560089184484	0.493010406306901	0.763963269735953
Merged-chr10-128091655-4	chr10	128091592	128091792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1091.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	5.32502359574987	5.82672944602544	5.62255729926187	5.10379451689385	5.77432193524295	6.03623383266715	5.81093636591264	5.74438693869295	0.59932587510362	0.0439928323361465	0.213828116131297
Merged-chr12-102173886-3	chr12	102173801	102174001	+	927.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172152, intron 2 of 16)	ORR1E|LTR|ERVL-MaLR	45174.0	NM_172152	238384.0	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	4.84917217081641	4.85176060068191	4.65036795731544	5.05566198369885	3.62119145240871	3.73768993717248	4.05186786960692	4.27367651972603	-2.33302952661485	2.89532688105485e-07	1.12615558506341e-05
Merged-chr1-74376470-8	chr1	74376328	74376528	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013612, intron 2 of 14)	intron (NM_013612, intron 2 of 14)	1225.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	4.76614858945153	4.40834753976678	5.07826404519959	4.79715925966774	5.06358766160646	4.73447261292585	5.22316460707342	4.87611573242133	0.422942764903672	0.234560610783965	0.544447848974703
Merged-chr1-170286179-1	chr1	170286079	170286279	+	655.0	f0_balb.idr	non-coding (NR_153837, exon 3 of 3)	non-coding (NR_153837, exon 3 of 3)	8861.0	NR_153837	26904.0	Mm.57009	NM_012009	ENSMUSG00000102418	Sh2d1b1	EAT-2|EAT-2A|Eat2|Eat2a|Sh2d1b	SH2 domain containing 1B1	protein-coding	3.34236464269263	3.01943864419562	3.12039677756951	3.17424303947879	3.26864012769874	2.88200369839095	3.16790566214955	3.34088044095676	0.0459345697133391	0.936940508126233	0.977204440107264
Merged-chr2-35109524-4	chr2	35109423	35109623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012018)	promoter-TSS (NM_012018)	31.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	6.76384683461217	7.03866043652546	7.06747926282626	6.84503368004836	7.33263087516823	7.4875696825073	7.25432977980711	7.38389549864363	0.593475279660465	0.00166384089760751	0.020251458832217
Merged-chr10-40489249-3	chr10	40489138	40489338	+	865.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81124.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	3.33733335794365	2.99588907586544	3.27751646469932	3.284294241273	3.47317396080408	3.67235178075716	3.26573339398952	3.69302598417649	1.04131026915648	0.054370372844216	0.243474600105596
Merged-chr5-148634155-3	chr5	148634061	148634261	+	916.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81373.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	3.37830152258509	3.39593519138639	3.58733524868037	2.87417713071255	4.7392697274512	4.37871990458167	4.18326053687899	4.11661302711015	3.29443925973632	7.65088529598073e-10	5.02046586287711e-08
Merged-chr12-35553390-4	chr12	35553358	35553558	+	939.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18469.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	4.91272838988941	4.90582760767207	5.2861370195644	5.73349690713139	4.81062371592515	4.62624149380973	4.51985667989205	4.67360860317047	-1.20608287712698	0.00159348715211202	0.0196029764950192
Merged-chr4-130789938-4	chr4	130789825	130790025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2612.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	6.52979099015129	6.91129491024147	6.73429258164326	6.65443989286076	6.44857799089508	6.92461316605334	6.81003769699085	6.54313167133921	-0.0394857561806599	0.86007583512343	0.947123023003096
Merged-chr18-63681348-2	chr18	63681248	63681448	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016792, intron 2 of 7)	intron (NM_016792, intron 2 of 7)	11011.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	3.2769441449362	3.62728263367236	2.86725183524756	2.98560722463785	3.61485464808766	3.26657675242756	3.37635001559307	3.33320580462671	0.646849367616428	0.295433872614618	0.607396411491466
Merged-chr6-86599401-4	chr6	86599322	86599522	+	941.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28752.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	4.73671421360289	4.42402592682481	4.73749315009591	4.56590367433656	4.50582293244289	4.87221037366299	4.78616646876387	4.77075038067671	0.249861805191865	0.478050580306903	0.754192228775143
Merged-chr9-65580227-4	chr9	65580122	65580322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153119)	promoter-TSS (NM_153119)	-135.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	8.36707426390554	8.54191809801437	8.39511451495694	8.22354735375115	8.41429140642983	8.55693434974781	8.56424976189286	8.38436411262504	0.124232840642422	0.432420998050522	0.722441201809841
Merged-chr7-45155099-4	chr7	45155014	45155214	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285904)	promoter-TSS (NM_001285904)	-576.0	NM_145954	69748.0	Mm.82139	NM_145954	ENSMUSG00000007833	Aldh16a1	2410004H02Rik|AI452234|mFLJ00209	aldehyde dehydrogenase 16 family, member A1	protein-coding	5.30935904071331	5.11602908562741	5.02415315712563	4.73564632853276	5.44355130647059	5.30112610451354	4.99991882744482	5.27781008356091	0.426536625882689	0.190019512154014	0.489103163231511
Merged-chr14-31336568-4	chr14	31336441	31336641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360187)	promoter-TSS (NM_001360187)	-97.0	NM_001360187	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	8.00790159483016	8.25396547122765	8.03559781346481	8.01194938217609	7.86846543919983	7.90390783011221	7.88845724635723	7.61651403657216	-0.330010540263966	0.0514943957253897	0.235727030248731
Merged-chr17-5260021-4	chr17	5259937	5260137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 5 of 19)	L1MD3|LINE|L1	158730.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	5.53890993332777	5.76356284095312	5.41432138089805	6.00502867600473	6.06590898202666	5.88471106254598	6.25481392859445	5.96396495318717	0.520585958241885	0.0618179315446646	0.26308750669164
Merged-chr12-111695045-2	chr12	111694945	111695145	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16940.0	NM_177374	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	3.26974002284527	3.16286448545578	3.1418751579953	3.22781466655224	3.49133306199623	3.50199820416405	3.6233528900854	3.49229290738235	1.13082564931625	0.0264864701316549	0.15440097505275
Merged-chr18-60843945-4	chr18	60843843	60844043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011552, intron 2 of 24)	intron (NM_011552, intron 2 of 24)	5021.0	NM_011552	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	6.69012373612277	6.66722742303012	6.54890193003486	6.46443853364552	6.92961645001914	6.65748986360904	7.01693657002888	6.609470788464	0.33310311621552	0.119389715147351	0.38236402854773
Merged-chr2-167922051-4	chr2	167921960	167922160	+	979.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10267.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	4.8431781386757	5.0886456605447	5.1459087429838	5.1942184244084	4.65359683013885	4.53009311156391	4.92888284410708	5.14233004688591	-0.496214089888538	0.151568501702844	0.435253719845424
Merged-chr1-143789098-2	chr1	143788998	143789198	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019562, intron 3 of 10)	B3|SINE|B2	11820.0	NM_019562	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	3.14200385765021	2.975283147221	3.0877495916598	2.7854070129788	3.12927242273064	2.72764589953926	2.96016884546687	2.96926881698616	-0.154763398496596	0.804437936367008	0.924756740732377
Merged-chr4-155488921-4	chr4	155488828	155489028	+	964.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2433.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	5.05290790355738	5.76525277615852	5.22093231784973	5.23982518168146	5.04190185234995	5.56852557604828	4.99337477843663	4.81669539717018	-0.400043403649625	0.259464105675864	0.571250530584125
Merged-chr2-148681055-4	chr2	148680947	148681147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028986)	promoter-TSS (NM_028986)	-73.0	NM_001355689	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	8.85643768209439	8.9703864419948	8.94853826702382	8.93113837589487	8.88473774157657	9.05897451888607	9.01328420870393	8.80843925498141	0.0194921721409029	0.891927398647964	0.959575887733914
Merged-chr12-118847138-4	chr12	118847049	118847249	+	671.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177082, intron 1 of 2)	CpG	820.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	3.1940328472278	3.36225563988742	3.43707498011714	3.35205533342854	3.83113869684872	3.37159226866381	3.52856549280868	3.37872020658752	0.711466065924469	0.174283521471168	0.468624021960685
Merged-chr17-32965818-4	chr17	32965711	32965911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033585)	promoter-TSS (NR_033585)	-20.0	NM_153063	224691.0	Mm.328953	NM_153063	ENSMUSG00000053600	Zfp472	KRIM-1|Krim-1A|Krim-1B|Krim1	zinc finger protein 472	protein-coding	6.41410074786458	6.30662267142451	6.21189313880648	6.20488661207967	6.5134985900923	6.38808501169158	6.23861686581776	6.49304901786813	0.20525762402267	0.351507889882092	0.658893189148013
Merged-chr7-105811138-4	chr7	105811040	105811240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025301)	promoter-TSS (NM_025301)	-53.0	NM_025301	27397.0	Mm.44225	NM_025301	ENSMUSG00000030879	Mrpl17	MRP-L26|Rpml26	mitochondrial ribosomal protein L17	protein-coding	9.21502105482307	9.32754321737682	9.35592648469357	9.17069281794138	9.22063828263778	9.33448153839972	9.2736589263134	9.17967001952103	-0.0182249277271288	0.894993415149827	0.96073210268323
Merged-chr19-6300548-3	chr19	6300458	6300658	+	965.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010119)	TTS (NM_010119)	-5899.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	3.65295377081873	4.0299293807805	3.70749423406024	3.896370710893	3.50029108541292	3.77143366209923	3.46475413978235	3.85487768371827	-0.553960089431997	0.256529695953531	0.568162252716061
Merged-chr8-82918149-3	chr8	82918049	82918249	+	957.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	54793.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	5.83600034115656	6.04326920706963	6.21008514255256	6.10888743445663	3.94221716150283	4.09432672685353	4.14427155748733	4.02117824100548	-4.66577074818995	1.16096099373302e-22	5.33135758534984e-20
Merged-chr17-34931241-4	chr17	34931141	34931341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010893)	promoter-TSS (NM_010893)	-12.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	8.47466033413308	8.82281591509563	8.47601410767002	8.36656182153799	8.65445609474217	8.76047632934034	8.6872785928621	8.30317624245731	0.0855503715081484	0.636852361144664	0.846476587502166
Merged-chr2-26941697-4	chr2	26941593	26941793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198628, intron 5 of 18)	intron (NM_198628, intron 5 of 18)	7624.0	NM_198628	279029.0	Mm.330079	NM_198628	ENSMUSG00000049897	Stkld1	Gm711|Sgk071	serine/threonine kinase-like domain containing 1	protein-coding	7.89064204098304	7.95525621440287	7.85467549133667	7.89434525054347	8.12605720703018	8.02443554105857	8.08140152643758	8.05819879314374	0.226405752585596	0.140094809945248	0.416157580026199
Merged-chr16-18877125-4	chr16	18877014	18877214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010922)	promoter-TSS (NM_010922)	364.0	NM_010435	15260.0	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|Tuple1	histone cell cycle regulator	protein-coding	5.11366456937551	5.42114635113536	5.82119431560925	5.21720340755616	5.56681653591767	5.55143640411184	5.19359904999449	5.43073077389871	0.0620908828882009	0.843124482169523	0.940459539910433
Merged-chr19-12010506-4	chr19	12010400	12010600	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26240.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	4.7524717690193	4.80388526473353	4.54152417374464	4.84105104099924	4.85958726887762	5.2026978496112	4.91108924490658	4.82588949805818	0.409449309627441	0.222147013245371	0.530130494377319
Merged-chr7-80652467-4	chr7	80652343	80652543	+	984.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173863, intron 2 of 14)	intron (NM_173863, intron 2 of 14)	16426.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	5.21589137898265	4.86781498400231	4.8292175339052	5.02524479174034	5.03871250101314	4.51525487760523	4.98103567176113	4.82603360731763	-0.253420205060749	0.460487460233949	0.742687499720882
Merged-chr11-69632786-4	chr11	69632695	69632895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011814)	promoter-TSS (NM_011814)	-176.0	NM_011814	23879.0	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	8.98023625475099	9.18770076237107	8.98878829052067	8.88625911451746	8.93848535551414	9.18795292351195	9.06795493147528	8.98321041072354	0.0398188636526442	0.792279394580651	0.919548033376458
Merged-chr7-16263554-10	chr7	16263468	16263668	+	896.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4028.0	NM_007577	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	3.32478584185083	3.20157181117382	3.42722108982048	3.23287966367683	3.18291206137236	3.13668260163096	3.01855025511512	3.1534924411139	-0.650677657262271	0.240772609688119	0.551329427813959
Merged-chr8-46781290-3	chr8	46781194	46781394	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	41549.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	3.43770525281441	3.16563392989622	3.15602948810991	3.39770122677959	3.48852752529624	3.26586233494777	3.20639744223684	3.21605747601604	0.0219234505803233	0.968009256507578	0.98865348920078
Merged-chr14-99142401-4	chr14	99142314	99142514	+	956.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029320, intron 9 of 17)	intron (NM_029320, intron 9 of 17)	-42644.0	NR_153390	72662.0	Mm.163339	NM_028315	ENSMUSG00000033166	Dis3	2810028N01Rik	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding	3.75823954416424	4.13023742379316	4.39466689542683	3.97186977366201	4.27423469566608	3.88086543265351	4.55129900216767	4.31218471179249	0.495967480149249	0.269849759790107	0.581626576190045
Merged-chr2-180582681-4	chr2	180582557	180582757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151482, exon 2 of 5)	non-coding (NR_151482, exon 2 of 5)	1435.0	NR_151482	73247.0	Mm.426558	NM_028479	ENSMUSG00000027569	Mrgbp	1600027N09Rik|AW060503|C80444	MRG/MORF4L binding protein	protein-coding	7.38481879668256	7.39967827082152	7.60709970037206	7.41233412345025	7.67501150805427	7.75846591232178	7.31892540614867	7.16145124630322	0.0709108150184277	0.727501838666826	0.891505430861744
Merged-chr9-120935242-4	chr9	120935142	120935342	+	948.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007614, intron 1 of 14)	intron (NM_007614, intron 1 of 14)	1664.0	NM_001165902	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	4.61747078844596	4.80837311246101	4.91381859409658	5.12348707316777	4.64416029194064	4.41884766749945	4.71499633559913	4.69573227042256	-0.565822958149135	0.113193395631333	0.371906975057362
Merged-chr12-83485981-3	chr12	83485896	83486096	+	800.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_058212, intron 1 of 8)	CpG	1740.0	NM_001267626	70127.0	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	3.63827808456785	3.63700935014701	3.58462523127872	3.64073524237645	3.59078140788604	3.75646957900462	3.90457718125766	3.34106476982666	0.113215847723522	0.817634569895664	0.929981783742416
Merged-chr3-137853463-4	chr3	137853374	137853574	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-11013.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	4.9176021075359	4.89228650180543	4.28619072020327	4.76803750256327	5.25584393223922	4.11594121398564	4.63897637052412	5.10031292443346	0.238057475252634	0.596905655065985	0.824993157707606
Merged-chr1-37639320-4	chr1	37639209	37639409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028096, intron 2 of 9)	intron (NM_028096, intron 2 of 9)	80502.0	NM_028096	72097.0	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	5.71102302648632	5.68203061704561	5.29944461339779	5.27829552685051	5.75209717621548	5.37691835272494	5.48111643123567	5.55882285875018	0.106957378115146	0.71505123667897	0.886010584897636
Merged-chr15-59654657-4	chr15	59654555	59654755	+	965.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144549, exon 3 of 3)	exon (NM_144549, exon 3 of 3)	6001.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	4.98892617814551	4.96048475709412	4.95644465465108	5.21761512036074	4.94594402929259	4.65074841278057	4.8278365510289	4.51508581110477	-0.585402568448616	0.086400646000528	0.320591752159286
Merged-chr13-81400907-4	chr13	81400807	81401007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 77 of 89)	intron (NM_054053, intron 77 of 89)	232237.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	3.483572436501	3.55358796166179	4.17429288200539	4.26122288883206	4.14542099082605	3.79779868968095	4.27124196484227	3.84545729981703	0.284974995846901	0.595229735088052	0.823817850531136
Merged-chr7-73595389-4	chr7	73595303	73595503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37008.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	7.54265010683086	7.5381790280291	7.05855738494569	7.42640805367129	7.3104611877786	7.31123684834717	7.60720907292029	7.29850560070067	-0.0284162699628658	0.886203782830564	0.957247996194402
Merged-chr11-83714178-4	chr11	83714088	83714288	+	988.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B2|LTR|ERVK	5184.0	NM_007969	14038.0	Mm.1650	NM_007969	ENSMUSG00000000983	Wfdc18	Expi|Kal1|WDNM1	WAP four-disulfide core domain 18	protein-coding	5.28292143880895	4.93195076166324	4.89721040111131	5.08265511788628	5.12902636568195	5.178949794072	4.94656047085261	4.89397724299727	-0.0239146969696906	0.939801664049205	0.97832781451618
Merged-chr7-24902091-4	chr7	24901984	24902184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008488)	promoter-TSS (NM_008488)	-902.0	NM_001130150	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	6.16904487643856	6.36238246137732	5.75723475852765	5.62573306826259	5.7671340176414	5.88232402950207	5.87264368165399	5.92126004403027	-0.230448051568282	0.418065953200567	0.711628236434313
Merged-chr8-104534972-4	chr8	104534841	104535041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144931)	promoter-TSS (NM_144931)	241.0	NM_001301164	12354.0	Mm.129265	NM_053070	ENSMUSG00000031883	Car7	AV343731|Ca7	carbonic anhydrase 7	protein-coding	6.14023994060302	6.87858067065291	6.42848920661594	6.24100088019405	6.39036638070507	6.60420253515205	6.34335441841263	6.04804426848506	-0.136494689116197	0.608810140375504	0.830795214768321
Merged-chr10-26322865-4	chr10	26322767	26322967	+	855.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359255, intron 12 of 21)	intron (NM_001359255, intron 12 of 21)	51205.0	NM_001359255	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	4.124641628073	4.17239561259545	4.22188736705166	4.62662753985364	4.19154371901009	4.03071918511638	4.45349622353025	4.50912879756344	-0.0310324295142546	0.942192182875934	0.979062797089676
Merged-chr2-6569276-2	chr2	6569176	6569376	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 11 of 15)	intron (NM_001110232, intron 11 of 15)	152386.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	3.0534123996113	3.26349722991548	3.16798263193461	2.73969510344325	2.73971526208285	2.89986562313175	2.91877689184438	3.21950544642944	-0.470759195661321	0.465526962866335	0.745964513504342
Merged-chr1-74784564-4	chr1	74784468	74784668	+	827.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009526, exon 4 of 4)	exon (NM_009526, exon 4 of 4)	-7451.0	NM_009518	22409.0	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	4.26419966756849	4.41321849768983	4.79114860309199	4.45925247654823	4.5136535675494	4.44295306953851	4.51386578679513	4.78787093257302	0.174202384007893	0.642658608188738	0.849309266102231
Merged-chr4-134513016-3	chr4	134512914	134513114	+	897.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081099, intron 1 of 2)	MURVY-LTR|LTR|ERV1	2015.0	NM_001081099	69885.0	Mm.141592	NM_001081099	ENSMUSG00000078521	Aunip	2610002D18Rik|Clhc1	aurora kinase A and ninein interacting protein	protein-coding	2.8403218897706	2.76380588865165	2.84060203105656	2.31206224261528	4.240846207741	3.96586248010175	3.97814735286169	3.64117550210693	7.87141681308985	9.39028344669715e-16	1.70074042099862e-13
Merged-chr17-15375935-3	chr17	15375795	15375995	+	847.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007865)	promoter-TSS (NM_007865)	-72.0	NM_007865	13388.0	Mm.4875	NM_007865	ENSMUSG00000014773	Dll1	Delta1	delta like canonical Notch ligand 1	protein-coding	3.11165808936341	3.25028846124976	3.04950315234479	2.93538313362097	3.23333084922227	3.15936848672373	3.32159695455096	3.17006164136599	0.545808251743346	0.324058830745691	0.635585647052554
Merged-chr3-156563270-1	chr3	156563170	156563370	+	642.0	f0_c57.idr	intron (NM_001039094, intron 1 of 6)	intron (NM_001039094, intron 1 of 6)	1476.0	NM_001039094	320840.0	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding	2.9745684013968	2.76583388079618	2.7656373008579	3.01750251858766	3.24876481928309	3.08468277409451	3.34756872120971	3.26165172134957	1.37334641746909	0.0233299434544814	0.141701684883226
Merged-chr13-20185307-4	chr13	20185189	20185389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	94782.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.88211257956291	5.87056376247017	5.5536779156569	5.85453400138074	6.68651385445492	6.48520753003369	6.07358612263436	6.01653360800109	0.855923637763451	0.00157844015515911	0.0194691300278255
Merged-chr19-7268134-4	chr19	7268010	7268210	+	940.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001320554)	promoter-TSS (NM_001320554)	-169.0	NM_001320554	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	3.78148773685805	4.02129597211858	3.66621601010109	3.68550496447668	3.97963613582263	4.20334977262416	3.82074005259687	4.2406106051994	0.759770498214116	0.089530769679147	0.326671655474267
Merged-chr6-81987147-4	chr6	81987062	81987262	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR3|LTR|Gypsy	-21213.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	4.67414899274795	4.76533992579209	4.84156648923839	4.7408640520651	5.29566949866773	5.38415633719184	5.24342315535913	5.14932714118188	0.994316574867913	0.00109025874315789	0.0144110542394123
Merged-chr2-154791874-4	chr2	154791796	154791996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139513, intron 1 of 8)	CpG	786.0	NM_001139511	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	5.59438364507805	5.95355727513018	5.48260691985998	5.28495898828994	5.96252401622438	5.87330791240429	5.69441498745091	5.38729578100505	0.266890818279147	0.379956278165234	0.682437540643488
Merged-chr7-90146510-4	chr7	90146408	90146608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	16295.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	6.0655666795143	6.62750842829535	6.54967978699078	6.20780461450877	6.14523569146826	6.41249095116965	6.3347436735606	6.52948713450138	-0.0328675958800042	0.894271133386929	0.960481560907683
Merged-chr13-100490632-4	chr13	100490519	100490719	+	814.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360706, intron 1 of 16)	intron (NM_001360706, intron 1 of 16)	1775.0	NR_153794	23894.0	Mm.272533	NM_022011	ENSMUSG00000021639	Gtf2h2	44kDa|BTF2 p44|BTF2-p44|Btf2p44|p44	general transcription factor II H, polypeptide 2	protein-coding	3.69718443123707	3.60160828834139	3.7473247914175	3.61606138818969	3.53973141144063	3.65166266846177	3.73148740741014	3.59020829712474	-0.111868016820452	0.811174444864634	0.926883359837906
Merged-chr15-9118756-4	chr15	9118672	9118872	+	963.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 7 of 9)	L2|LINE|L2	21682.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	4.94783928185088	4.45310025001017	5.2392043191231	5.47301073483808	4.53339831922027	4.2359927251281	4.26026944279712	4.77041752021462	-1.29413776405499	0.00241242765338148	0.027007579103498
Merged-chr15-63985910-4	chr15	63985861	63986061	+	840.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	12105.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.21500876196707	3.49211448680341	3.61911804588834	3.63544404447971	3.64416638037995	3.85155413621007	3.81751454594677	3.88019330603874	0.0979944174287664	0.844005851779983	0.94088019607581
Merged-chr12-102524402-4	chr12	102524295	102524495	+	894.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30546.0	NM_007693	12652.0	Mm.4137	NM_007693	ENSMUSG00000021194	Chga	ChrA|cgA	chromogranin A	protein-coding	4.66415237634244	4.79415226847465	5.02795819955587	4.85537685963304	4.20109218337696	4.34066075100763	4.39247994553525	4.62301862312694	-1.00477157716507	0.00654076213429045	0.0578700942146252
Merged-chr15-101772889-3	chr15	101772790	101772990	+	781.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9386.0	NR_033444	406222.0	Mm.359153	NM_001003669	ENSMUSG00000067596	Krt74	K74|Kb37	keratin 74	pseudo	3.516242300663	3.5288885786579	3.57041290841802	3.62109195738949	3.50016165745341	3.57472664653975	3.50321095407393	3.51482124411278	-0.139709669607886	0.771449072491279	0.910379161490028
Merged-chr6-97814403-4	chr6	97814303	97814503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	7345.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	5.1935324637557	5.66414225914298	5.29338732596968	5.26582933274723	5.43615716044646	5.50018059149819	5.64558070563792	5.46713052480613	0.256322554963958	0.372442908379244	0.676226660600623
Merged-chr12-98274048-4	chr12	98273935	98274135	+	864.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008152, intron 1 of 1)	intron (NM_008152, intron 1 of 1)	5400.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	4.06941761849472	3.68883081937089	4.07006743845504	3.89793153240673	3.72188176999541	3.38773609930288	3.71501917454753	4.22706091373383	-0.391952048358928	0.445795925051646	0.731692488510875
Merged-chr14-105296349-3	chr14	105296251	105296451	+	885.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029561, intron 4 of 7)	intron (NM_029561, intron 4 of 7)	37678.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	3.92082471257684	4.16829300353752	3.87190050730002	3.8759581074563	3.86451787594601	3.77042691054258	3.90485012084281	3.81828509582648	-0.340562086385204	0.439909921408134	0.727441689701829
Merged-chr12-81719901-4	chr12	81719780	81719980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001174107, exon 11 of 11)	3' UTR (NM_001174107, exon 11 of 11)	61290.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	6.85501054949029	6.84410816611293	6.84253688861122	7.0782386581436	6.98059423332267	6.84284461043034	6.8482432578668	6.61258355138302	-0.120139946341185	0.558037217974797	0.802963980746693
Merged-chr4-40947413-2	chr4	40947313	40947513	+	968.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171739, intron 1 of 6)	intron (NM_001171739, intron 1 of 6)	881.0	NM_009736	12017.0	Mm.688	NM_009736	ENSMUSG00000028416	Bag1	BAG-1|Rap46	BCL2-associated athanogene 1	protein-coding	3.16905398153535	2.95571923513743	3.11301813950503	2.99364757836508	3.20527128789043	3.0339978532068	3.0431538661332	3.11139894628321	0.20412176020725	0.717449461834281	0.887001463253648
Merged-chr6-87541142-4	chr6	87541045	87541245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7886.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	7.73474657848003	7.66142626047439	8.13925654661993	8.09256743635657	7.25745346968102	7.56909101271419	7.40546337390068	7.62317991309655	-0.607257939332253	0.00230503139406833	0.0260966803878463
Merged-chr5-143711532-2	chr5	143711432	143711632	+	856.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_029749, intron 17 of 17)	intron (NM_029749, intron 17 of 17)	20748.0	NM_029749	76800.0	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	3.05910536266615	2.90138366962928	3.11676032952612	2.79371964201045	3.12840866509434	2.908465603467	3.04795111803526	3.11503056867327	0.388876018332649	0.509313783181966	0.773960180154769
Merged-chr5-148303173-2	chr5	148303073	148303273	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359505, intron 6 of 8)	Lx9|LINE|L1	37956.0	NM_001359505	77521.0	Mm.244177	NM_029920	ENSMUSG00000029651	Mtus2	5730592G18Rik|A730013O20Rik|AU067634|C130038G02Rik|Cazip|Gm763|mKIAA0774	microtubule associated tumor suppressor candidate 2	protein-coding	2.84034939984228	2.43809031245639	2.644281368502	2.29423378569351	2.89632167913034	2.82306769252702	2.88809599491016	3.00970811255516	1.70891470194106	0.0156068794921015	0.107873575001776
Merged-chr11-21034211-4	chr11	21034063	21034263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57161.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	7.08152369912524	8.04483089690555	6.6900968044241	5.94275487397622	7.25186067407293	7.64774528306614	6.5739512267811	5.98751557224669	-0.218173264761444	0.76649554141058	0.908660493187862
Merged-chr1-61373866-2	chr1	61373766	61373966	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4566.0	NR_040483	77341.0	Mm.402964	NR_040483	ENSMUSG00000085447	9530026F06Rik	-	RIKEN cDNA 9530026F06 gene	ncRNA	3.16059807303876	2.78016139270931	3.04069264097414	3.48157894046232	2.96781262459265	3.38138212315177	3.09136835045837	3.215489867628	0.0723593967611168	0.91150380013133	0.96695373445261
Merged-chr4-130782687-4	chr4	130782579	130782779	+	942.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9858.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	4.47937413500345	5.11701881132768	4.65313537504999	4.55973389061765	4.75322748405201	5.01239081178523	4.63155086681931	4.65011794462957	0.0908950387386502	0.806713815594595	0.925483423510202
Merged-chr1-191741237-4	chr1	191741133	191741333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134829, intron 2 of 7)	intron (NM_001134829, intron 2 of 7)	22838.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	5.36409085449232	4.58367821146432	5.07150919703124	5.33980480805149	5.51931574512328	5.51034863929756	5.50064597026026	5.71428065167101	0.757817535890017	0.0212023231118216	0.133059438968114
Merged-chr18-75415440-2	chr18	75415340	75415540	+	939.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48075.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	2.80186571483749	2.99353680952157	2.97622500654553	2.59799833023307	2.64579066881195	2.63209219937734	2.90887949206331	2.52636687677742	-0.776464938495076	0.258991057239217	0.57079429993676
Merged-chr12-18610061-4	chr12	18609955	18610155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	95545.0	NM_001201330	236366.0	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	6.82034661032755	6.73063714126676	7.03681562958485	7.08633873127956	7.38816231297051	6.89300963163586	7.6420204776771	7.05632669969178	0.479188959014835	0.0386661627739708	0.197334107699754
Merged-chr6-131354611-3	chr6	131354503	131354703	+	806.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33847.0	NM_139117	56449.0	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	3.06388794059929	3.18629661969251	3.35671594401461	3.24682011342437	4.01031371357172	4.14828325385724	3.91938947188008	3.70302242269931	2.33087145127313	1.08416559636556e-05	0.00029612364920838
Merged-chr1-190979340-4	chr1	190979231	190979431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144879)	promoter-TSS (NM_144879)	-35.0	NR_027352	226841.0	Mm.22856	NM_144879	ENSMUSG00000037568	Vash2	B130052G07Rik	vasohibin 2	protein-coding	5.31876347479868	5.73087972979777	5.6405947104022	5.8273589624663	5.85921646301975	5.6224100495143	5.71059580393222	5.38059237366633	0.0101616082128083	0.971659961081264	0.989736248826158
Merged-chr6-31209602-4	chr6	31209517	31209717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	8857.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	5.40395890860564	5.78662623733914	6.1911726618522	6.63422487629263	5.74412443497742	5.62033915683972	5.96250880742894	6.0516511809337	-0.390614613666819	0.246177220005061	0.557442319560494
Merged-chr5-18036091-4	chr5	18036007	18036207	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	73537.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	5.34093385306674	5.06855620679811	5.57868510363919	5.4510632798977	5.27504065295357	5.39479711310698	5.0960878941115	5.00982825635789	-0.310679916771713	0.31252748405098	0.624504855620566
Merged-chr6-43642458-4	chr6	43642289	43642489	+	828.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 2 of 8)	L2|LINE|L2	23889.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	3.27125165460718	3.10468996425834	3.58491856125961	3.16419597437538	3.0225889923294	3.44469271712566	3.25928206295212	3.43585336590142	0.0305202439555037	0.95722774126743	0.984802032140526
Merged-chr7-80209945-4	chr7	80209849	80210049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	L4_B_Mam|LINE|RTE-X	11508.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	6.38565475951592	6.28892550230337	7.06779108833333	6.83601476982616	6.43164113804832	6.03789908413912	6.13858392984759	6.5669503345906	-0.543438649212379	0.0461606949542044	0.220613487192687
Merged-chr7-43681178-4	chr7	43681077	43681277	+	854.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9146.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	3.91206751915912	4.50480174306619	4.28691704043749	4.36087017790351	4.63294707291029	4.59126862112243	4.39952785732997	4.49814381675807	0.56038072925994	0.155934196250329	0.441815949458189
Merged-chr13-102896001-4	chr13	102895896	102896096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	135741.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	6.08965922445207	6.0460683652654	5.71509649873314	6.16273249368777	5.538478121927	5.72846779322694	5.55146072226592	5.68507239538264	-0.658100262929514	0.0114527156811041	0.0869506700763251
Merged-chr8-122870518-4	chr8	122870421	122870621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	22147.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	6.01458452358574	6.0371152174918	6.11944270886533	5.84964195809428	6.1180091942338	6.21225215252371	6.23731112348302	5.72109961061315	0.141664194070636	0.572493593684053	0.811251013052168
Merged-chr19-11093501-4	chr19	11093406	11093606	+	776.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12403.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	3.70520586274474	4.003665391801	4.3010961843421	3.75541912954943	3.69122775045996	4.09233012199252	4.04176902255216	3.58241408348307	-0.25281980938822	0.606778676472785	0.829617737469389
Merged-chr14-13361401-4	chr14	13361317	13361517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028052, intron 2 of 5)	intron (NM_028052, intron 2 of 5)	76637.0	NM_028052	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	7.47122107175431	7.5642347428925	7.91234137603536	7.71710385916626	7.36784207779884	7.63056142517383	7.35668652603623	7.55073571522618	-0.265534990687832	0.157650321268902	0.444315791347796
Merged-chr16-91484261-3	chr16	91484119	91484319	+	921.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010508)	promoter-TSS (NM_010508)	-996.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	3.45421223604917	2.9619920893219	3.12336200699105	2.75918014971003	3.12128217663651	3.41589006416406	3.28580510087547	3.24163047679868	0.670994752169662	0.268487022659225	0.580131084080006
Merged-chr1-191068600-4	chr1	191068483	191068683	+	899.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 2 of 5)	intron (NM_198654, intron 2 of 5)	5562.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	4.0206635030878	4.22911437691917	4.13223003155722	3.90756459178467	4.78503860101942	4.36544375689842	5.04772540147995	4.68627102999732	1.57424452967469	5.88221228760933e-05	0.00129906915426542
Merged-chr16-62857700-4	chr16	62857611	62857811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011173, intron 1 of 14)	intron (NM_011173, intron 1 of 14)	3404.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	6.52250248740401	6.44245424581902	6.12215129896544	6.76361781649965	6.76229114450361	6.38715351120312	6.65785849095816	6.48582506212684	0.12860852236434	0.595658974920814	0.824102203698659
Merged-chr12-80758405-3	chr12	80758336	80758536	+	892.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001008423, exon 2 of 2)	exon (NM_001008423, exon 2 of 2)	2279.0	NM_001008423	380768.0	Mm.29367	NM_001008423	ENSMUSG00000062961	Ccdc177	Gm1568	coiled-coil domain containing 177	protein-coding	3.40747378326686	3.75496567271435	3.58422616629423	3.67956257092233	3.64555459713585	3.80757460347822	3.57040164491924	3.63605514458791	0.142908654031541	0.765889319425917	0.908405583340288
Merged-chr4-133586761-3	chr4	133586639	133586839	+	881.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290742, intron 2 of 4)	intron (NM_001290742, intron 2 of 4)	2366.0	NM_133884	100210.0	Mm.274001	NM_133884	ENSMUSG00000028848	Gpn2	AI838661|Atpbd1b|R74630	GPN-loop GTPase 2	protein-coding	3.89610017162163	3.87343422509152	4.01941048395757	3.88348178983499	3.33660469262079	3.20107974404872	3.22709542330454	3.30454567806717	-2.26701819310888	4.28644276813033e-05	0.000988673719354338
Merged-chr14-70781316-4	chr14	70781212	70781412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6931.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	7.78454735830534	7.68087375871601	7.80127137037329	7.71905994447549	7.91036542638765	7.84111915141433	7.88696891933283	7.7250986287555	0.131535458284171	0.415319596140725	0.709557371410491
Merged-chr19-53284622-4	chr19	53284515	53284715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25891.0	NM_001008542	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	6.32148277605529	6.22642452179381	6.61559372599305	6.4183307601738	6.64635833899421	6.62828784738289	6.87983372744459	6.71405139613336	0.460381465297774	0.032489356284551	0.176517814745291
Merged-chr4-9009912-4	chr4	9009815	9010015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	258591.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	7.00204361345036	6.60101114153746	7.19787680069896	7.41661539599485	6.81187822531759	6.6881577930424	7.10778411201157	6.89514395390828	-0.296947680875645	0.219095380688462	0.526573139587522
Merged-chr18-56573646-3	chr18	56573547	56573747	+	874.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127338)	promoter-TSS (NM_001127338)	-708.0	NM_001127338	110695.0	Mm.30250	NM_138600	ENSMUSG00000053644	Aldh7a1	Atq1|D18Wsu181e	aldehyde dehydrogenase family 7, member A1	protein-coding	3.56469224392212	3.33409969292115	3.4627854115975	3.33903652837703	3.37065599262432	3.52300470999588	3.08690718033294	3.46082629892381	-0.186071497003218	0.726566993483545	0.891138160891292
Merged-chr2-138246064-4	chr2	138245974	138246174	+	927.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16C|LTR|ERVL	-10510.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	4.47576085372925	4.61037771566112	5.04389210204683	4.84116071362659	4.53376528489891	4.36062133478685	4.76883349139409	4.51754112677995	-0.452459230816408	0.224852140435259	0.533284902067823
Merged-chr15-25896964-4	chr15	25896870	25897070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-36582.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	6.37449728272343	6.37656342321052	6.24255385271598	6.77398461956822	6.48290146070065	6.29429919817511	6.46276434375012	6.47483503963195	-0.0674766395924937	0.77556930477254	0.912391634160948
Merged-chr2-38511899-4	chr2	38511851	38512051	+	972.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159631)	promoter-TSS (NM_001159631)	75.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	4.37110519300732	4.22314165196758	4.15085547067392	4.20310412865754	4.53298635233437	4.12091744435004	4.1800728772654	4.24126536337252	0.136759870016293	0.732135569202534	0.893930797678999
Merged-chr9-79816638-3	chr9	79816554	79816754	+	866.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357352, intron 5 of 5)	intron (NM_001357352, intron 5 of 5)	14328.0	NM_001357354	70598.0	Mm.23049	NM_001081243	ENSMUSG00000034898	Filip1	5730485H21Rik|AI843021	filamin A interacting protein 1	protein-coding	3.97926195916011	4.1429401521097	4.16798499001525	4.43274614788148	3.69645071441837	3.99638992313854	4.27266835575321	3.81636589028557	-0.648751430366488	0.155947937234408	0.441834901262108
Merged-chr10-127643892-4	chr10	127643800	127644000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009284, intron 1 of 21)	intron (NM_009284, intron 1 of 21)	914.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	7.01921765775126	7.19446009694421	7.06735814824565	6.23769123996117	6.87644469264211	7.11034932171578	6.77824503152032	6.57665959446494	-0.0987211090383402	0.714700749515173	0.885988446998162
Merged-chr13-47216485-4	chr13	47216392	47216592	+	892.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	22489.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	5.07536795135336	5.01107903590299	4.26162329081959	4.09190339361747	4.55186971352078	4.34198024216903	3.84896102785908	4.35420256372561	-0.850675700933846	0.084777325318491	0.316831105683339
Merged-chr4-141454710-3	chr4	141454611	141454811	+	860.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009541, intron 2 of 15)	intron (NM_009541, intron 2 of 15)	10038.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	3.69251637638406	3.54477365229827	3.41410854469666	3.05337198226887	3.68086458228013	3.81418360769201	3.40160485744662	3.91970537782579	0.887214042157071	0.101475895998046	0.349519027286036
Merged-chr10-82763595-4	chr10	82763454	82763654	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010914, intron 1 of 7)	CpG	587.0	NM_010914	18045.0	Mm.245998	NM_010914	ENSMUSG00000020248	Nfyb	AA985999|Cbf-A	nuclear transcription factor-Y beta	protein-coding	4.39346965891996	4.39348602258656	4.43658463132815	4.35912648716617	4.64554563397867	4.47841504911035	4.19261526945865	4.51445338554846	0.194203408510204	0.604013402913269	0.828350269166784
Merged-chr9-66082175-4	chr9	66082059	66082259	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12428.0	NM_001025612	382083.0	Mm.477103	NM_001025612	ENSMUSG00000039452	Snx22	Gm1120	sorting nexin 22	protein-coding	5.28154204671639	6.21041723021537	5.63366610982921	5.83552863218426	6.15074863743401	5.94286495482672	6.00689530981029	5.97103321742151	0.367078368561335	0.207645748960835	0.511667131665279
Merged-chr18-82464814-4	chr18	82464664	82464864	+	901.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-10359.0	NM_001025245	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	3.56468045641357	3.74469011151947	3.99059464591126	3.85037239694984	3.94070963025684	3.86058837705682	3.83096941865418	4.11691865167622	0.401857313385987	0.373035877399432	0.67671796075698
Merged-chr7-100178576-3	chr7	100178501	100178701	+	780.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190950)	promoter-TSS (NM_001190950)	-82.0	NM_001360467	57442.0	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	3.70739146666558	3.47260846211388	3.45836408571996	3.59483639947787	3.38701521818637	3.45600131541479	3.27042788228034	3.34138167932176	-0.681171182719017	0.182157485109728	0.47878218634963
Merged-chr14-18234112-4	chr14	18234014	18234214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011584, intron 1 of 7)	intron (NM_011584, intron 1 of 7)	4992.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	7.85445631210522	7.92006228647867	7.96468978972188	8.28705672376901	8.07861790493439	8.01807935507346	8.08272155948973	7.72284767183098	-0.0541896886208681	0.77122225487942	0.91036734532567
Merged-chr19-10204756-4	chr19	10204693	10204893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271615)	promoter-TSS (NM_001271615)	591.0	NM_026919	69038.0	Mm.375100	NM_026919	ENSMUSG00000036372	Tmem258	1810006K21Rik	transmembrane protein 258	protein-coding	6.48308506227219	6.35675085099333	6.38666729861288	5.96410888995034	6.17625419699557	5.97241213303082	6.15357846397503	6.23898697908737	-0.233297873158476	0.347461941792341	0.655506340921964
Merged-chr3-83839249-2	chr3	83839149	83839349	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011905, intron 2 of 2)	intron (NM_011905, intron 2 of 2)	2359.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	3.44495693659738	3.52618969788737	3.55903987064185	3.78073968833326	3.62193400358688	3.36533264156957	3.69736232042442	3.80285136141955	0.113516850967141	0.821873541441465	0.931918902107461
Merged-chr10-127114539-4	chr10	127114446	127114646	+	943.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177614, intron 5 of 13)	intron (NM_177614, intron 5 of 13)	6614.0	NM_177614	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	4.86238343181205	4.77253280136592	5.20575210412745	4.81390919855587	4.68975189043819	4.92544132570303	4.64886496083764	4.78631519364055	-0.315363338605816	0.354703032719731	0.661365305978239
Merged-chr5-123866653-4	chr5	123866556	123866756	+	745.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1140.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	3.53875119042265	3.50682551580403	3.09755383117655	3.32736911664524	4.0571092304122	3.53827763453877	3.67879554236671	3.82905722089223	1.38609939589494	0.00907344695438338	0.073532833970859
Merged-chr18-60748697-4	chr18	60748587	60748787	+	917.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008306)	promoter-TSS (NM_008306)	-22.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	4.82298265219487	4.98991083519033	5.04795382896524	4.49725741225858	4.44878444033955	4.72755918763812	4.65317763418075	4.41141178957827	-0.603405864496939	0.107344676962895	0.361382260156614
Merged-chr11-35842147-4	chr11	35841979	35842179	+	908.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170779, intron 20 of 22)	intron (NM_170779, intron 20 of 22)	-7551.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	4.04496737808035	3.97611096664801	4.79490132149153	4.37771525990158	3.90769901153514	4.11862283350935	3.97707995296284	4.14132565569893	-0.766314089628219	0.0924618587355427	0.332675673981982
Merged-chr15-91186487-4	chr15	91186463	91186663	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358967, intron 2 of 9)	intron (NM_001358967, intron 2 of 9)	5444.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	4.19736167418307	4.10528745287988	4.48098303171452	4.62962903967839	3.91724253901468	4.22946744638895	3.98649115017685	3.89106023496166	-0.960336618885581	0.0270547870172734	0.156460518891458
Merged-chr4-149543350-4	chr4	149543247	149543447	+	811.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023465, intron 2 of 4)	intron (NM_023465, intron 2 of 4)	-1770.0	NM_001141930	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	3.78250234136185	4.00002735997642	3.8389845033459	3.94500356092819	4.05289482336613	4.21195904864392	4.19712665525604	4.03925077891994	0.595743170372215	0.15466136664585	0.439923330262347
Merged-chr3-41463105-3	chr3	41463032	41463232	+	690.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30067.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	3.48810383501442	3.53389295259998	3.59231606059542	4.01503632616707	2.90111744791533	3.15593587587453	3.24147527029918	3.48660165411564	-1.7238840610543	0.00477129646584532	0.0458878680100532
Merged-chr4-152283366-4	chr4	152283263	152283463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178406, exon 6 of 6)	exon (NM_178406, exon 6 of 6)	8299.0	NM_008237	15207.0	Mm.3516	NM_008237	ENSMUSG00000028946	Hes3	Hes-3|bHLHb43	hes family bHLH transcription factor 3	protein-coding	5.8630434099533	5.67294967600605	5.90977642191076	6.0008779322675	5.91861477006459	5.91796727232352	5.7871670921879	5.97109737351282	0.0391291944935612	0.874725598843304	0.952925927223413
Merged-chr4-116075863-4	chr4	116075765	116075965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025641)	promoter-TSS (NM_025641)	596.0	NM_153521	230654.0	Mm.3655	NM_153521	ENSMUSG00000028703	Lrrc41	AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1	leucine rich repeat containing 41	protein-coding	5.81180427898213	6.04533167962627	6.15991968878004	5.79745374837868	6.30962150500571	6.29546411847933	6.50772751910332	6.69081789817476	0.770461904049386	0.00143531245587114	0.0180023011811065
Merged-chr9-121632091-4	chr9	121631906	121632106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026915, intron 1 of 5)	intron (NM_026915, intron 1 of 5)	9587.0	NM_026915	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	6.41519038535199	6.49762755188215	6.97452708741603	6.93444093514757	6.77677459851563	6.8499883778749	6.74257174246186	7.09674766539796	0.187151710232396	0.421748477545137	0.714158079771268
Merged-chr16-37871404-4	chr16	37871282	37871482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177093, intron 1 of 3)	intron (NM_177093, intron 1 of 3)	2982.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	5.67058161069388	5.26944652595915	5.10979139406569	5.36167964958448	5.31006059319116	5.13994337694998	5.44833091287922	5.30232954143055	-0.108935263401718	0.71645184218683	0.8866074790069
Merged-chr12-98674869-7	chr12	98674772	98674972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46730.0	NM_001289574	104871.0	Mm.210053	NM_178914	ENSMUSG00000021007	Spata7	AI661438|B230306G18Rik|HSD3	spermatogenesis associated 7	protein-coding	5.45082535976848	6.15852715900931	5.96905604416609	5.6785473903524	5.31050450036978	5.10692286546834	5.17000447203349	5.29390910260152	-1.05821134696683	0.000541259316250595	0.00823211471611134
Merged-chr19-60946806-4	chr19	60946704	60946904	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	57055.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	5.31392044157077	4.87549589305553	5.79834313643796	5.62578139441107	5.68089131928793	5.75441162568486	5.41196762887558	5.98021618161721	0.451961943765693	0.171735809296003	0.465087374685055
Merged-chr2-165987453-4	chr2	165987345	165987545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5192.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	5.2608842036769	6.04123635352357	5.61852563499068	5.16880026296906	5.72549449218278	5.68607428342558	5.53745175821714	5.64019403278189	0.148296377136219	0.642125425925011	0.848998712583196
Merged-chr16-32275216-4	chr16	32275120	32275320	+	776.99585	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_183283)	TTS (NM_183283)	-2241.0	NM_027355	70238.0	Mm.228263	NM_027355	ENSMUSG00000014074	Rnf168	3110001H15Rik	ring finger protein 168	protein-coding	4.31130619848559	4.23940870433727	3.59701091593052	4.1423521448218	4.17561719383144	4.3517130036278	4.52193852800269	4.43047010666014	0.657702131768975	0.138811598719826	0.414381792154761
Merged-chr16-91466765-3	chr16	91466642	91466842	+	977.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_077219, intron 1 of 1)	intron (NR_077219, intron 1 of 1)	1638.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	3.83762704753492	3.46437350757539	3.51433961936217	3.3648029847002	4.43960331450161	4.71122159849202	4.413207953848	4.43257539669551	2.61531700150921	2.95883549672491e-09	1.7419929844614e-07
Merged-chr2-11278988-4	chr2	11278928	11279128	+	858.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 13 of 17)	intron (NM_008859, intron 13 of 17)	-60461.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	3.73467092343903	3.23511225049758	3.91864128445488	3.5326599742257	3.79290250494702	3.57771233756087	3.44894550868006	3.78132595279658	0.119496717089035	0.820351074906724	0.931216561407907
Merged-chr14-55788886-4	chr14	55788804	55789004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019955)	promoter-TSS (NM_019955)	-47.0	NM_001164108	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	6.49016904255194	6.64146803392333	6.0633286204863	6.31846325250169	6.2154691182197	6.44254079092662	6.03288689053478	6.05906759437319	-0.302418335309718	0.223895713409927	0.532073750828165
Merged-chr14-103346880-4	chr14	103346779	103346979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207215)	promoter-TSS (NM_207215)	-79.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	7.89095011888915	7.61348791390167	7.66624686849366	8.03374211605995	7.65807903587586	7.85199235259806	8.05063449624257	7.66103735716455	-0.00950653948824868	0.960699572907045	0.986018439623899
Merged-chr13-37509545-1	chr13	37509445	37509645	+	665.666687	f0_balb.idr	Intergenic	Intergenic	164200.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.3063675646627	3.28185951107453	3.55832602066575	3.1354220455881	3.36228750265044	3.10298768278561	3.11765119488468	3.1888063675225	-0.436351040896739	0.439401972484887	0.727268759434991
Merged-chr8-103580384-3	chr8	103580294	103580494	+	906.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-23405.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	3.54492365767103	3.54692144495608	3.43447656478939	3.53583400906927	3.25039005341597	3.66178902340814	3.5311457084136	3.54342135001579	-0.07024722199896	0.889044565469317	0.958430059757376
Merged-chr2-48717996-4	chr2	48717901	48718101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96108.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	6.36933803616444	5.98358184488423	6.2999430167403	6.35966263201303	6.54923571198225	6.23772486231014	5.98569271029456	5.96587308952157	-0.0670413154396344	0.79621224438231	0.921052599307061
Merged-chr19-38027040-4	chr19	38026948	38027148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 1 of 53)	intron (NM_001302140, intron 1 of 53)	16529.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	5.9338260835047	5.55625426688889	5.2522556710689	5.58111024988541	5.06271170884193	5.36272621489651	5.41168874437177	5.74178006367982	-0.333419640011271	0.293421303362015	0.605994016535346
Merged-chr5-35743444-3	chr5	35743347	35743547	+	945.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3460.0	NM_001359895	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	3.64581384920639	3.33917746575705	3.30572550683505	3.24947762685453	4.49348584771628	3.99645055026205	4.41829100869407	4.10154738592417	2.61134004292814	5.05318440400089e-08	2.30860470277522e-06
Merged-chr8-13105593-4	chr8	13105485	13105685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146207)	promoter-TSS (NM_146207)	-136.0	NM_146207	99375.0	Mm.212861	NM_146207	ENSMUSG00000031446	Cul4a	2810470J21Rik|AW495282	cullin 4A	protein-coding	9.18048195160507	9.37621922736588	9.25508411784257	9.1561870003216	9.21929827224582	9.26177746356857	9.22363857813211	9.00476502936169	-0.076544689654215	0.598619480156839	0.825987886019831
Merged-chr2-72201679-4	chr2	72201559	72201759	+	746.875	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 11 of 26)	intron (NM_001355478, intron 11 of 26)	-83978.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	2.49202359367556	2.35772288001456	2.33237552029612	2.1815284423406	3.19179157318297	2.87860061222248	2.81445330110915	2.82487937159171	3.57916850342593	2.39712685953272e-06	7.69621527896614e-05
Merged-chr17-73933845-1	chr17	73933745	73933945	+	752.0	f0_balb.idr	intron (NM_011723, intron 6 of 35)	intron (NM_011723, intron 6 of 35)	16351.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	2.89932023805502	2.80516307679711	3.12246759729879	3.09101225503593	2.74041648106524	2.8077165958301	2.69560056766448	2.89823560590387	-0.937362063655298	0.140254765751608	0.416365432349073
Merged-chr2-153562441-3	chr2	153562352	153562552	+	756.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-32481.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	3.72392407452644	3.57897344271357	3.77559965244384	3.27365859271309	3.5583782811727	3.61644449161375	3.70868336696662	4.23021175260454	0.639224011753446	0.220571029965756	0.528520559022423
Merged-chr8-88621598-3	chr8	88621517	88621717	+	766.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14511.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	3.49529952641051	3.35749978775202	3.28260487252373	3.19576062732039	3.36472139136127	2.98705561688454	3.32635676363597	3.3917618929558	-0.17992390327206	0.745669165645411	0.89965485286124
Merged-chr17-71002599-4	chr17	71002489	71002689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026064)	promoter-TSS (NM_026064)	-56.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	8.50723676227402	8.59405102780954	8.2500303443201	8.19908683876865	8.34404230629691	8.66686987494476	8.69109249476292	8.64977537018768	0.248432872698984	0.157929188117946	0.444757336539952
Merged-chr11-20899129-4	chr11	20899029	20899229	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68021.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	5.06334969505627	5.13745345394735	5.22196244912616	5.13988920487308	4.9565696230952	4.98220384091619	5.10458929348504	5.12617843975483	-0.193053192384345	0.520815801843252	0.781020709141491
Merged-chr14-25768501-3	chr14	25768397	25768597	+	923.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 1 of 3)	CpG	359.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	3.77772614705406	3.44972809877769	3.52784874834857	3.43383801490383	3.59410018356328	3.52670959386987	3.51417405954508	3.63192632649246	0.0771909861926447	0.874697513538315	0.952925927223413
Merged-chr10-96342694-4	chr10	96342588	96342788	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116481.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	4.1831172818104	4.80085511874304	4.45264221116839	4.25968466620239	4.98032609946187	5.43380577643236	5.26238615665702	4.86570737746074	1.445605268293	0.000113640370535448	0.00225881260383766
Merged-chr4-107577182-2	chr4	107577082	107577282	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_147221, intron 4 of 10)	intron (NM_147221, intron 4 of 10)	106407.0	NR_151717	56296.0	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	2.79200708999557	2.97486946023604	2.7923015513032	2.87722588072747	2.75880321241892	2.96605783377372	2.96980583072633	3.1438028462675	0.429223636505515	0.480686073217072	0.756081526054677
Merged-chr11-111067031-4	chr11	111066930	111067130	+	953.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008425, intron 1 of 1)	intron (NM_008425, intron 1 of 1)	866.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	4.59905224471748	4.94931524612189	4.31932031044381	4.35002721828529	4.9738387138575	4.89431811326651	5.14148742422738	4.4641314046997	0.663871912169235	0.0883129245859124	0.324229644656131
Merged-chr2-118597774-4	chr2	118597669	118597869	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009773)	promoter-TSS (NM_009773)	-442.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	5.59342201508791	5.519927118142	5.18510353202424	5.4827420906547	5.83565411192454	5.76986152964468	5.99325685862908	5.83468229557842	0.670856073933641	0.0110187535267855	0.0845884229166379
Merged-chr17-87280117-4	chr17	87280021	87280221	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015506, intron 2 of 4)	MER110-int|LTR|ERV1	2693.0	NR_015506	74597.0	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	5.37529821662397	5.22605332104844	5.29021020003522	5.57280597638298	5.01556844635473	5.37194342212963	4.92901935239507	5.05996412989603	-0.531642613529789	0.0850005742525292	0.317265646288452
Merged-chr7-75782161-4	chr7	75782082	75782282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66156.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	7.48855838497813	7.80340694841494	7.79233643629697	7.69361351389237	7.65690380434425	7.67667613220607	7.47167547125967	7.23293729630896	-0.232906881998157	0.21855057245494	0.525814135432487
Merged-chr2-58791920-3	chr2	58791821	58792021	+	870.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029692)	TTS (NM_029692)	36737.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	2.78248753178697	3.11866533317594	2.85120642882254	3.26001973307786	2.81459422047223	3.02336090123674	3.02611417324486	2.97684108447105	-0.293114436103656	0.643043370336271	0.849459897971419
Merged-chr12-8208239-4	chr12	8208146	8208346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167767, intron 1 of 5)	CpG	119.0	NM_001167767	68832.0	Mm.25608	NM_172401	ENSMUSG00000037669	Ldah	1110057K04Rik|mLDAH	lipid droplet associated hydrolase	protein-coding	7.13264058996663	7.16794585557925	7.52098157888873	7.23585318072658	6.9028836140749	7.21434688307289	7.05078473198519	7.1404469162047	-0.26672272119312	0.176689729044723	0.471881968470446
Merged-chr7-118491535-4	chr7	118491452	118491652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033380, exon 1 of 1)	5' UTR (NM_001033380, exon 1 of 1)	423.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	6.42445700430555	6.34383829584182	6.52414576048762	6.31783805650768	6.11120220348399	6.37863410245027	6.3582423438589	6.55066216739079	-0.0718915755946962	0.751443460958152	0.902145552360104
Merged-chr5-90881885-4	chr5	90881790	90881990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9355.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	7.89362040920893	7.52046417089473	7.78768026115031	7.45541552510375	7.47204981778621	7.54299086316265	7.49463489298615	7.49877487805158	-0.218345810802462	0.241026192008225	0.551619163882296
Merged-chr7-127206834-4	chr7	127206740	127206940	+	999.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144522, intron 1 of 8)	intron (NM_144522, intron 1 of 8)	1628.0	NM_144522	68449.0	Mm.41420	NM_144522	ENSMUSG00000042492	Tbc1d10b	1110003P22Rik|C87963	TBC1 domain family, member 10b	protein-coding	5.26275703387892	4.90474120238381	5.17074945622774	5.04490684529456	4.83816959380749	5.60230032465591	5.4035969790547	5.16718059327339	0.325348547019457	0.330837943998251	0.642094846510006
Merged-chr13-23751503-4	chr13	23751402	23751602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178203)	promoter-TSS (NM_178203)	414.0	NM_175660	319172.0	Mm.423402	NM_175660	ENSMUSG00000061615	Hist1h2ab	H2A.1|H2a-53	histone cluster 1, H2ab	protein-coding	5.36683534791551	5.46994636591188	5.42836764496496	5.17903592629669	5.72602344450561	5.68922270580365	6.01581995300517	5.36402933443106	0.628828187314403	0.0292000678719712	0.164313665005712
Merged-chr16-10965154-4	chr16	10965048	10965248	+	923.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 2 of 3)	intron (NM_019980, intron 2 of 3)	27973.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	4.44179056078199	4.43949541657043	4.52582020701761	4.66828680620972	4.60198536286895	4.57204589055293	4.46451889430621	4.35071940957233	-0.0648513545159469	0.858808529585112	0.946576014812915
Merged-chr8-70700661-4	chr8	70700564	70700764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010592)	TTS (NM_010592)	2925.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	6.82480568908138	6.8239532885026	6.98407915478586	6.75767024419655	6.82051991435548	7.00252249011537	6.97323225122871	7.0156755830409	0.149749632167813	0.440166830610079	0.727657961132312
Merged-chr1-36369194-4	chr1	36369089	36369289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310513)	promoter-TSS (NM_001310513)	-8.0	NM_001310513	226976.0	Mm.24734	NM_172652	ENSMUSG00000010453	Kansl3	4632411B12Rik|4932435K23|AI431067|AI647574|C85723|Kiaa1310|mKIAA1310	KAT8 regulatory NSL complex subunit 3	protein-coding	6.63821056680138	6.58862373685921	6.26592613283421	6.17412312891812	6.9702231096655	7.21886397407396	6.45926669570862	6.72372942679257	0.647103986364146	0.0101968249242705	0.0800220288075686
Merged-chr1-33669788-4	chr1	33669691	33669891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033199)	promoter-TSS (NR_033199)	3.0	NM_008922	19076.0	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	6.41146957548846	6.07477079853831	6.12135718816035	6.40961256214239	6.54118430748118	6.23267940507518	6.65706807636244	6.65841181206842	0.389772003200099	0.0967986454921612	0.340770106705898
Merged-chr7-6150921-2	chr7	6150821	6151021	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	5050.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	3.43423379085879	3.40572848390225	3.25699568719605	3.28887156376339	3.56017480992875	3.36917999769813	3.57547018380114	3.5388414821754	0.587227757981817	0.239146482746513	0.549612081867723
Merged-chr7-105750824-4	chr7	105750706	105750906	+	874.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009906, intron 3 of 12)	intron (NM_009906, intron 3 of 12)	1429.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	3.01749392376309	3.14316546159989	3.08211945388449	3.1883869748544	3.31646732885484	3.31316389065108	3.1327339038195	3.36217261602705	0.638579360243374	0.241528384340322	0.552043827273772
Merged-chr5-24039640-4	chr5	24039540	24039740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8950.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	7.34614462187889	7.04288922137719	6.60385438204355	7.10083285508544	7.15810719041442	7.11948000015025	6.69797763708941	6.37854091815567	-0.234356042371371	0.369724276198593	0.673903466122242
Merged-chr7-110221715-4	chr7	110221585	110221785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009302)	promoter-TSS (NM_009302)	-18.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	6.48877943752165	6.74748032622732	6.39942395782839	6.38154578092318	6.88966921118847	6.91834234893808	6.63475660292021	6.93533323137538	0.490456218477543	0.0219922381836656	0.136500307087123
Merged-chr5-90894417-4	chr5	90894328	90894528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3183.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	7.03482430812305	6.50832970642786	7.08251375881049	7.34194156771132	6.72025387349492	6.60237676004417	7.19641767238896	6.47477663233253	-0.354409134328181	0.180478401286139	0.476891812767323
Merged-chr8-91112311-3	chr8	91112203	91112403	+	982.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001302337, exon 10 of 10)	3' UTR (NM_001302337, exon 10 of 10)	21436.0	NM_001358938	14339.0	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	3.63779340081755	3.40290142932969	3.92605416755656	4.31800945522453	3.3290841543983	3.38402942025767	3.45366910158101	3.63623367603685	-1.34189228804825	0.0173010042031501	0.116038693818139
Merged-chr17-67359786-4	chr17	67359670	67359870	+	967.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5279.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	4.75278008245581	4.88782376705274	4.63062290308135	4.78665716817206	4.71195476957454	5.0025872887933	5.1820267806998	4.78889364055947	0.316389923132208	0.349876476274744	0.657388741777579
Merged-chr19-5024519-3	chr19	5024364	5024564	+	938.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007854, intron 1 of 11)	CpG	458.0	NM_007854	13340.0	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	3.60045256740837	3.41096078069214	3.27705141462258	3.03615216678938	3.52447270920126	3.32726788008386	3.53699416468568	3.27541426250305	0.305098626391696	0.580262234698086	0.815718435955212
Merged-chr2-140784816-4	chr2	140784728	140784928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 3 of 18)	Lx5|LINE|L1	-113352.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	7.11996773284037	7.28599808334362	7.06117704496073	7.10026285056908	7.13935215622719	7.29785768569925	7.33832039304855	6.9933953875339	0.0717165364776269	0.706351809512684	0.882026349021226
Merged-chr2-75770883-4	chr2	75770780	75770980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61297.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	5.80596562170027	6.23375780500287	5.92651582365213	5.90813891400772	6.19375727733396	5.93293373100619	5.94090073222097	5.89929591339494	0.0449150010938518	0.858687080559863	0.946576014812915
Merged-chr6-114295744-4	chr6	114295634	114295834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178703, intron 1 of 15)	intron (NM_178703, intron 1 of 15)	13099.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	5.67060645332259	6.31035442293396	5.97417087844496	5.71492611871171	6.08354103734722	6.2569065080967	6.34175346726463	6.01398674875202	0.374092941583408	0.16268934403	0.45213434400716
Merged-chr2-30242756-4	chr2	30242634	30242834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177725, intron 2 of 3)	intron (NM_177725, intron 2 of 3)	4965.0	NM_177725	241296.0	Mm.389232	NM_177725	ENSMUSG00000007476	Lrrc8a	Lrrc8|mKIAA1437	leucine rich repeat containing 8A	protein-coding	6.09104666943477	6.38022077498775	5.74921734518979	6.51570166434872	5.80610215941013	5.50208252817619	6.02036284960381	5.66400354388486	-0.736016286009965	0.010790432936412	0.0834385905465363
Merged-chr10-121474789-2	chr10	121474689	121474889	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	1461.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	3.1320229918198	3.14570519365653	3.07791763090485	3.0057703232212	2.7969508113121	2.86990213284536	2.88909777401669	2.76288588830364	-1.17377670095202	0.0563792526022515	0.248637412388315
Merged-chr10-77417839-2	chr10	77417739	77417939	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027377)	promoter-TSS (NR_027377)	434.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	3.94798836692608	3.702504860811	4.12501562224829	3.62564269321375	3.81823147948574	3.8068588817466	3.83420244728652	4.08054843145816	0.105465221850399	0.820362232108523	0.931216561407907
Merged-chr6-42396254-4	chr6	42396184	42396384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3954.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	6.60094043644354	6.51208568180928	6.48555149409844	6.76890575719756	6.74781079035522	6.59121143720438	6.82513022676172	6.74704130462293	0.175467748347838	0.400582986046637	0.698354021989605
Merged-chr10-22283001-3	chr10	22282902	22283102	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177775, intron 1 of 5)	intron (NM_001177775, intron 1 of 5)	9528.0	NM_001177775	667281.0	Mm.484254	NM_001177775	ENSMUSG00000075297	H60b	EG667281	histocompatibility 60b	protein-coding	6.30763903859276	5.96557236655253	6.14063803979785	6.44175989818091	4.0515738483169	4.25863453942521	4.3541491664903	4.17919795931294	-4.32473583205926	1.04539021938019e-24	6.35981456626173e-22
Merged-chr8-79639255-4	chr8	79639155	79639355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256033)	promoter-TSS (NM_001256033)	-421.0	NM_001256033	73945.0	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	9.31816998039879	9.26423387424824	9.16522182570288	9.35710832010597	9.35425360382615	9.28000378633146	9.5280007628575	9.16285110920973	0.072556510868092	0.625539115279154	0.839988089996697
Merged-chr16-3920996-4	chr16	3920905	3921105	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029738, intron 6 of 11)	intron (NM_029738, intron 6 of 11)	11996.0	NM_029738	76779.0	Mm.458921	NM_029738	ENSMUSG00000014232	Cluap1	2310030D15Rik|2610111M03Rik	clusterin associated protein 1	protein-coding	4.27035062812387	4.05438240239708	4.35860399759486	4.74215738161319	4.00966953214979	3.90667761664753	4.3798501092022	4.65535370811638	-0.290416136732974	0.531781992123264	0.787625586111403
Merged-chr9-114925730-3	chr9	114925636	114925836	+	621.916687	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_175380, intron 1 of 7)	intron (NM_175380, intron 1 of 7)	8251.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	3.68804544137382	3.21661338782287	3.57188497858883	3.97950537317057	3.89550032721404	3.80865035336701	3.87768221470747	4.26077363804363	0.894250324940777	0.100477327601335	0.347965311133684
Merged-chr15-59651982-7	chr15	59651897	59652097	+	787.571411	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144549, intron 2 of 2)	intron (NM_144549, intron 2 of 2)	3343.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	2.84614431411843	3.2466292587029	2.97703330177752	2.7538714301737	2.80760907726262	3.20823505839197	3.02615524101828	2.97552790629369	0.177770697058872	0.775678845759427	0.912448391052675
Merged-chr10-121474152-4	chr10	121474052	121474252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	2098.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	5.50377850921475	5.69602604030761	5.26260702824151	5.5692408415481	5.33921465542542	5.3728064688809	5.76866928460592	5.55477420777279	-0.0148891026067993	0.958709580630819	0.985258503915927
Merged-chr5-102011064-6	chr5	102010956	102011156	+	921.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	58865.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.58570608319433	3.35599006274119	3.82749133533816	3.4779493603758	3.67601802489567	3.59082106981945	3.4039196400092	3.58418673021837	0.0177758234808564	0.971793891951853	0.989744687786953
Merged-chr15-5517589-4	chr15	5517476	5517676	+	837.552063	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045274, intron 1 of 4)	intron (NR_045274, intron 1 of 4)	21258.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	3.44132013940534	3.2110711418017	4.02479281722877	3.22721643517092	3.30386676403345	3.37469363126177	3.48304466806438	3.43987806516931	-0.377573340811251	0.510918897780314	0.775074357160952
Merged-chr5-140768532-4	chr5	140768440	140768640	+	894.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 2 of 3)	intron (NM_010302, intron 2 of 3)	44413.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	4.07282859581556	3.50107272851885	3.79032273025615	4.2652961147137	3.86301138731588	3.85573016830981	3.87536089066078	3.61964209499043	-0.403502003291501	0.421544811622402	0.714001052191097
Merged-chr17-27555738-4	chr17	27555618	27555818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166536)	promoter-TSS (NM_001166536)	-856.0	NM_001166536	15361.0	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	6.68341604061679	6.85924385923912	6.32218078647786	6.2815432372514	6.95140909439439	7.14107236627814	6.36687416015258	6.8079843616379	0.419412529832349	0.105019583386238	0.356433758675821
Merged-chr14-30764606-3	chr14	30764503	30764703	+	813.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166531, intron 2 of 21)	intron (NM_001166531, intron 2 of 21)	48988.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	4.05864676914944	3.92447261471204	3.54035239462242	3.60489641115872	3.76848586431051	4.04711042793529	3.64789694040215	4.05667177463925	0.273456565710458	0.570657408509307	0.810188963404487
Merged-chr9-78437360-2	chr9	78437260	78437460	+	718.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173386, exon 2 of 5)	exon (NM_173386, exon 2 of 5)	5877.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	3.18479564351048	3.26278134963864	3.24184817885586	3.14957727701856	3.18657784335287	3.29620980385931	3.05382405972052	2.99752905755495	-0.264732971858349	0.633618790672146	0.844734068201025
Merged-chr13-75810107-1	chr13	75810007	75810207	+	568.0	f0_c57.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-29778.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	2.54972661193156	2.41475930024208	2.62872617305606	2.2481591845672	3.21553137678578	3.30781265008968	3.06860081410931	3.02467938232371	3.98189880916255	1.15018358904289e-07	4.88186748267643e-06
Merged-chr3-151771283-3	chr3	151771193	151771393	+	680.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-8402.0	NM_031367	15061.0	Mm.219544	NM_031367	ENSMUSG00000039146	Ifi44l	H-28|H28|H28-1|NS1178	interferon-induced protein 44 like	protein-coding	2.76315053644608	2.91517129414735	2.99384111692747	3.33481002448575	2.29150901491853	2.59037697086092	2.39991181842047	2.40403935198905	-4.45973154647195	4.19803455631079e-05	0.000971746021735433
Merged-chr17-36947202-4	chr17	36947040	36947240	+	873.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001099632, exon 4 of 4)	exon (NM_001099632, exon 4 of 4)	4089.0	NM_001099632	386454.0	Mm.105324	NM_001099632	ENSMUSG00000036492	Rnf39	BC038661|Gm1786|Gm1787|Gm320|LIRF	ring finger protein 39	protein-coding	4.1235198889046	4.14348990436895	3.92953575326773	4.11281079751481	3.88168290230892	4.2022510817058	3.91369060285374	4.20867502181177	-0.0798953475170135	0.850032692424601	0.943377775572077
Merged-chr4-9111156-4	chr4	9111055	9111255	+	849.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-158138.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	4.26989801186527	4.12945861956287	4.09036838825361	4.52152362087004	4.09226377078056	4.16468958517079	3.80900698054476	4.18108038661663	-0.534479648460282	0.213878006788633	0.519418016486679
Merged-chr16-91477819-4	chr16	91477722	91477922	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-7393.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	5.13434341792798	5.11820132886178	4.96329213051099	4.55651810350035	5.50288498256355	5.02667493220087	5.26007648756606	5.25409859280905	0.637999409800624	0.0583516411243122	0.253876006331749
Merged-chr10-127164783-4	chr10	127164689	127164889	+	971.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008080)	promoter-TSS (NM_008080)	-367.0	NR_045166	14421.0	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	4.88377619592145	5.06711318505099	4.8845780107908	5.18398298408178	4.72057237113222	4.82198437208366	4.89717087844658	5.11461885066068	-0.268615096380724	0.415851831499744	0.709930066326653
Merged-chr17-31040707-4	chr17	31040622	31040822	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16972.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	5.39373957208257	4.99718383386356	4.79698313107949	5.26932857357369	4.4961015011622	4.725336465218	4.42946229789211	4.71510335991341	-1.12810543706138	0.00154068384748952	0.0190886571941612
Merged-chr10-44494670-3	chr10	44494568	44494768	+	965.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35920.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	3.74261119767035	3.40559853734549	3.52836284464585	3.36189208265201	4.014864391756	3.52229195485626	3.95023535145726	3.58350317989691	0.88120224033247	0.0786562824065679	0.303467696103696
Merged-chr12-100779584-4	chr12	100779458	100779658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145448, intron 1 of 12)	intron (NM_145448, intron 1 of 12)	501.0	NM_145448	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	4.69111040790842	5.12223236016572	5.21501666226912	4.77933951034077	5.16431312276517	5.0292347955789	4.43836026011183	5.23956712308486	0.0834026138896991	0.823295304468302	0.932247237471869
Merged-chr14-31583279-4	chr14	31583168	31583368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5885.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	6.16705393386627	5.87549685465592	6.04848352492439	6.25367481085635	6.11842130586068	5.7214063258264	6.2099820508497	5.71124441782897	-0.207189306147163	0.432512485651641	0.722552778092758
Merged-chr4-150488304-4	chr4	150488195	150488395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	163879.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	7.5837613535876	7.82621383087068	7.99154506512367	8.0371892362364	7.36291580354053	7.22855385053376	7.73672975312383	7.44869417355215	-0.55183287720129	0.00555713872308481	0.0513436626649083
Merged-chr4-59009333-4	chr4	59009232	59009432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033165, intron 1 of 3)	intron (NM_001033165, intron 1 of 3)	6139.0	NM_001033165	72429.0	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	5.93212394169174	6.41314275128854	6.36296695942049	6.42431382266939	5.98969095813228	5.82763694500456	5.49835335532593	6.01872098748167	-0.702466997435672	0.00815865224845052	0.0680563352153357
Merged-chr16-84834933-4	chr16	84834835	84835035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302216)	promoter-TSS (NM_001302216)	41.0	NM_001358500	11957.0	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	8.55995651494816	8.28732962275528	8.41342946419151	8.40524134702416	8.52541330959827	8.61714142834448	8.63703765763641	8.29294680817855	0.134524867255444	0.404220446135024	0.701366930244469
Merged-chr11-110972798-1	chr11	110972698	110972898	+	555.0	f1_c57bl6.idr	intron (NM_010604, intron 1 of 1)	MTA_Mm|LTR|ERVL-MaLR	4765.0	NM_001252207	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	2.34451482462506	2.28954184058457	2.26201214459826	2.10910895158219	3.03715617906265	2.81076019584491	2.62435230661962	2.92446892418724	3.90253820692948	1.06239965666777e-06	3.70507325634272e-05
Merged-chr2-132262432-2	chr2	132262332	132262532	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138651)	promoter-TSS (NM_138651)	-716.0	NM_001291040	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	3.35695187940634	3.43587316353506	3.06321930597941	2.68106237134808	3.0910528720398	3.36303239562517	3.28983695198891	3.1259301864031	0.200505490050411	0.752002584750317	0.902329068825205
Merged-chr6-113641011-2	chr6	113640911	113641111	+	828.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 1 of 11)	intron (NM_001113553, intron 1 of 11)	2544.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	3.28062709147886	3.10447667363757	3.48489075822965	2.60274408894323	3.10339926704142	3.15283545014501	3.153471482165	3.27917345900644	0.0516208673710864	0.937175934575196	0.977223723991794
Merged-chr9-55327422-4	chr9	55327311	55327511	+	894.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172923, intron 1 of 10)	intron (NM_172923, intron 1 of 10)	498.0	NM_001357568	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	4.07725989870661	5.28839883083603	4.07791408222998	3.40173250128284	4.20674098639919	4.39969377807519	3.44534293538034	3.60208783124498	-1.05934467616401	0.316265772983546	0.628198170927748
Merged-chr12-69425076-4	chr12	69424984	69425184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50466.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	6.98108523733441	7.08497235967761	7.04951304905357	7.54342918221212	5.60303005764584	5.86197724279281	5.97787509070544	5.79105065231058	-2.06263515686257	7.37736380433424e-17	1.61077723383039e-14
Merged-chr6-97508713-3	chr6	97508625	97508825	+	825.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-20905.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.31723147935145	3.37213043243	3.56070305314145	2.77846828347754	4.20592514761162	3.6249076611277	3.83935629996002	3.50190010637898	1.73558124382324	0.00384956366663478	0.0388939804439173
Merged-chr7-55711087-3	chr7	55711010	55711210	+	963.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57074.0	NM_001310740	233274.0	Mm.44425	NM_178706	ENSMUSG00000051504	Siglech	6430529G09Rik|Siglec-H	sialic acid binding Ig-like lectin H	protein-coding	3.93260640994994	4.27857216057376	4.08221580185392	4.35206031846791	3.66727238913144	4.15827081073638	3.96822015993594	4.12575274432585	-0.52389122889907	0.243524387564012	0.554604088569207
Merged-chr5-146781819-4	chr5	146781658	146781858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	L1M4|LINE|L1	13198.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	7.40485573667538	7.48725369330902	7.23534532400292	7.40255130784855	7.66991369453735	7.69758309168196	7.61268975189212	7.51532239307953	0.315879821333081	0.0669267110141917	0.275952984028219
Merged-chr6-31353641-4	chr6	31353546	31353746	+	949.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45127.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	4.8309750630784	4.84875957954283	4.75162830160433	5.37772284528352	5.02822629544478	4.84530755907934	5.2307465012994	5.00926179100407	0.0615641129188925	0.862557148555842	0.948225401948674
Merged-chr16-32247113-4	chr16	32246968	32247168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173439)	promoter-TSS (NM_173439)	-43.0	NM_173439	268882.0	Mm.256137	NM_173439	ENSMUSG00000035764	Fbxo45	2610017J04Rik|AI463119|BC026799	F-box protein 45	protein-coding	7.3934352853051	7.2334121397093	6.76571816415374	7.06308558775317	7.39770831991098	7.40926493142925	7.32918583600881	7.02839382827898	0.230142006506634	0.280167043344219	0.592253666749477
Merged-chr5-34538105-4	chr5	34538006	34538206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	-5259.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	5.69213770114426	5.485948350555	5.67023598306322	5.59046831129931	4.95943466335082	5.03853634741177	5.2999201992807	5.2281942360703	-0.859971017263534	0.00301507295049975	0.0321128052586595
Merged-chr3-41083208-4	chr3	41083125	41083325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027558)	promoter-TSS (NM_027558)	-179.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	9.14902244906219	9.12455468284761	9.15686764259932	9.00034111899156	9.33500282965247	9.56680986400288	9.61430213949038	9.27127635003732	0.429208571386251	0.00452657343717503	0.0441305260491277
Merged-chr17-25773726-4	chr17	25773634	25773834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026238)	promoter-TSS (NM_026238)	-42.0	NM_026238	67563.0	Mm.24201	NM_026238	ENSMUSG00000002280	Narfl	9030612I22Rik|AI504405|PRN	nuclear prelamin A recognition factor-like	protein-coding	6.39653879698447	6.20707181005551	6.16310349480986	6.16273951777663	6.99688057389354	6.62634037078144	6.31043166982786	6.72078644062294	0.68514670646325	0.00414307501804304	0.0412101644367364
Merged-chr9-32445929-4	chr9	32445832	32446032	+	754.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 5 of 8)	intron (NM_008026, intron 5 of 8)	51947.0	NM_001168354	56379.0	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	3.91747420913728	3.84881105797986	3.9180496958223	3.65371729707047	3.88677899308787	3.88239849436857	3.94880156099349	4.09730520909273	0.367101652643295	0.401679678353937	0.699204172692155
Merged-chr10-96620076-5	chr10	96619967	96620167	+	947.405701	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007569, exon 2 of 2)	3' UTR (NM_007569, exon 2 of 2)	3066.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	4.34281010614247	4.36975564260076	4.50140265921182	4.43402610543628	4.15714182747902	4.38355197001131	4.04598853549389	3.95156712969916	-0.670447252066545	0.093747579642348	0.334932438456191
Merged-chr10-28485831-1	chr10	28485731	28485931	+	730.0	f0_balb.idr	intron (NM_001359356, intron 11 of 30)	intron (NM_001359356, intron 11 of 30)	-182529.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	3.12918969824872	2.86366490914322	2.85613707898345	3.12416595836023	2.66106795156314	2.61177282894418	2.6515928627821	2.72674412752755	-1.68868570774668	0.0128993250062795	0.0945096299147679
Merged-chr1-140266299-2	chr1	140266197	140266397	+	621.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081027, intron 1 of 27)	intron (NM_001081027, intron 1 of 27)	20040.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	2.91069071201546	2.80286897335811	2.8537602665339	3.15276362582157	2.47659494336592	2.77002607581869	2.51567892351552	2.52075220692914	-1.99302634474276	0.00653559629157531	0.0578315773791694
Merged-chr4-7392675-3	chr4	7392575	7392775	+	898.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168013.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	3.22982681849142	3.36626620119449	3.23016119957772	3.86955679057199	3.46474812906167	3.96836815767438	3.99287742751312	3.5440176040562	0.902476691186116	0.131056138193085	0.402982642476199
Merged-chr6-72544545-6	chr6	72544437	72544637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271415)	promoter-TSS (NM_001271415)	0.0	NM_001271415	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	4.63445235513409	4.79361496154437	4.9727797762638	4.15133048479353	4.25186330278509	4.73022968318738	4.15910546093843	4.77799142460804	-0.35115741893364	0.420622258656387	0.713388099239967
Merged-chr3-16183126-4	chr3	16183012	16183212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145919)	promoter-TSS (NM_001145919)	-53.0	NM_001358043	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	8.41977211327916	8.52266833964753	8.5949136134204	8.61540040992753	8.5838009582519	8.96995937789288	8.75195032861984	8.56128939732272	0.227292508046876	0.1643192893427	0.454467445982463
Merged-chr11-65807150-4	chr11	65807073	65807273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026107)	promoter-TSS (NM_026107)	-2.0	NM_001302374	52712.0	Mm.340052	NM_026107	ENSMUSG00000018347	Zkscan6	1700128E15Rik|D11Ertd714e|KOX11|Zfp535|Znf18	zinc finger with KRAB and SCAN domains 6	protein-coding	7.73319333628965	7.93135435226837	7.75099160278878	7.73764368899799	8.09410388658262	8.13921212168986	8.30677078025208	7.89242203621627	0.42110560623954	0.0140365906730863	0.100201633489079
Merged-chr4-140684693-4	chr4	140684535	140684735	+	859.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16838.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	3.42201857708017	3.98099965586115	3.87249790726849	3.50655323038509	3.664883372777	3.60512217239797	4.07095310485482	3.91677129969294	0.335436765017868	0.506162711270863	0.771888853855569
Merged-chr1-132317592-4	chr1	132317497	132317697	+	964.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195025, intron 1 of 7)	intron (NM_001195025, intron 1 of 7)	1472.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	4.5368000694372	4.70330816774423	4.53751021446121	4.60739078949652	4.72054502336426	4.43975834210605	4.5169756551824	4.726607858931	0.0295577316805921	0.933152169369691	0.97591593099567
Merged-chr5-139197181-4	chr5	139197074	139197274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3463.0	NM_001256115	77053.0	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	5.98070111087074	6.15595623942951	6.00260081418712	5.57918463213733	5.96535766949077	5.7685909069434	5.81906632540017	5.46714339731799	-0.255482200050535	0.367576685646824	0.672036908138686
Merged-chr10-67059120-2	chr10	67059020	67059220	+	785.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	37868.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	2.71571871380599	2.56531599283524	2.71608972768928	2.39652617382061	2.58170418988275	2.69766821463263	2.44780111706463	2.52384615006845	-0.164011918854229	0.812333916665588	0.927498023599686
Merged-chr12-98267812-4	chr12	98267708	98267908	+	959.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008152)	promoter-TSS (NM_008152)	-827.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	5.06438599950277	4.67559574945302	5.0319424187878	5.35543052580287	4.96272743419567	4.82138812803682	5.25002521973346	5.06178475513663	-0.0738072200809059	0.831192685561503	0.935322338382222
Merged-chr16-3776520-4	chr16	3776391	3776591	+	819.604126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32392.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	3.87033340136473	3.85950826887155	3.70102221967177	3.68204095635583	4.14619263314638	4.14566379562288	4.25725261594879	4.15336167824594	1.09523847041415	0.008557885874898	0.0704617418958201
Merged-chr6-87533233-4	chr6	87533106	87533306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286610)	promoter-TSS (NM_001286610)	53.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	6.66643783241992	6.52598821224297	6.93623988305147	6.83037601952904	6.3950898334681	6.33713212851431	6.49158902502691	6.80430497079077	-0.337336659041987	0.13714684084241	0.411824241716235
Merged-chr6-29214555-4	chr6	29214405	29214605	+	781.354187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302933, intron 1 of 14)	intron (NM_001302933, intron 1 of 14)	1859.0	NM_001302933	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	4.30580608658101	4.48134209281224	4.62628500450552	5.01502596101177	3.9805921535611	4.00691424092056	4.37407366056126	4.05487667118011	-1.29994573478167	0.00266045167236231	0.0291067152762184
Merged-chr2-153163145-3	chr2	153163049	153163249	+	854.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	1848.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	3.74668658314609	4.33742313160945	3.57383027560036	3.25394356219864	4.12026144464558	3.81346705459232	3.56059359888536	3.94534761462828	0.227516875974802	0.68676838006617	0.871908413750359
Merged-chr17-45552239-4	chr17	45552128	45552328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2551.0	NM_001013749	210573.0	Mm.329064	NM_001013749	ENSMUSG00000096847	Tmem151b	Gm323	transmembrane protein 151B	protein-coding	5.14781120117222	5.1061960526361	5.08322862062021	5.11475824229555	5.09062647314763	5.28950068315747	5.09145164334657	5.11289293941576	0.0586519241547572	0.842643519648216	0.940251336238462
Merged-chr10-44005884-4	chr10	44005785	44005985	+	781.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1039.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	3.99789174034912	4.04180096094971	3.72851032213974	3.7874748354708	4.18895588417105	4.17032537309869	4.07442852114891	4.13447439706029	0.683137229374889	0.102414829491851	0.351524629082058
Merged-chr13-113589735-4	chr13	113589641	113589841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28823.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	8.81075543124643	8.77313833727964	8.88854855060157	8.9292025270319	8.4259135549252	8.60513567414349	8.78797058704066	8.44329504728466	-0.353435030700838	0.0249309507566735	0.148173388333756
Merged-chr13-52042062-4	chr13	52041959	52042159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54682.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	6.37358060041028	6.08936889141192	6.20323374481896	6.57510115500555	6.51731043300393	6.4002109086536	6.56840719639191	6.31558179356537	0.173198933406887	0.46262870148048	0.74416799350498
Merged-chr18-4348970-8	chr18	4348891	4349091	+	974.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007746, exon 2 of 8)	exon (NM_007746, exon 2 of 8)	3962.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	3.98077712133438	3.87883131243561	4.17521822793425	4.22356274184306	4.4701027056309	4.05020826809537	4.15685764681812	4.21679317091532	0.406477174090242	0.335883060689965	0.646035084628611
Merged-chr1-75188119-4	chr1	75188018	75188218	+	970.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003917, intron 5 of 15)	intron (NM_001003917, intron 5 of 15)	3892.0	NM_001003917	245860.0	Mm.238266	NM_001003917	ENSMUSG00000033124	Atg9a	AU019532|Apg9l1|Atg9|Atg9l1	autophagy related 9A	protein-coding	4.39370439153449	4.80491958006201	4.79277317294839	4.65200410642067	4.92872120926339	5.1426793303938	4.73160161616032	5.31268142431908	0.747771524855496	0.0326261283883681	0.176978666607601
Merged-chr1-156522314-2	chr1	156522218	156522418	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_1-LTR_MM|LTR|ERVK	-36469.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	3.47738761319723	3.39430603427559	3.36603579400774	3.17559967557661	3.88000741105955	3.42016379306029	3.16819008087104	3.42128940277261	0.537157163908364	0.332627169680605	0.643563818279806
Merged-chr12-85473540-4	chr12	85473437	85473637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010234)	promoter-TSS (NM_010234)	-353.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	7.57583313503068	7.32813833532944	7.1217145706954	7.3372426567288	7.45667738244248	7.74550311202031	7.87855154685078	7.40514815553439	0.375872877475618	0.0622422058463917	0.264030266537837
Merged-chr15-50449768-4	chr15	50449681	50449881	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	439268.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	4.44980680538254	4.2654597093221	4.36072630997336	4.50049772740056	4.59164062644949	4.39294371884676	4.79983624749039	4.82026163569883	0.57121440985357	0.120926127236031	0.385101374011609
Merged-chr5-113398183-3	chr5	113398069	113398269	+	902.1889039999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40875.0	NM_001012726	503692.0	Mm.348794	NM_001012726	ENSMUSG00000053873	Aym1	-	activator of yeast meiotic promoters 1	protein-coding	3.98617719307933	4.03198315087392	4.64129912570473	4.74473412611096	3.64550688432691	3.48195187057503	4.01809605660244	3.43553494991423	-2.04021554082796	0.00020187429408181	0.00366561489246152
Merged-chr15-84232210-7	chr15	84232056	84232256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133167, exon 1 of 13)	exon (NM_133167, exon 1 of 13)	113.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	4.71094970199847	4.91147101960257	5.54599066013802	4.2395069690394	5.06725115231646	5.05318383294966	5.2136997946101	5.29295930875485	0.433688682790427	0.290341621480621	0.602478755622678
Merged-chr14-58284666-4	chr14	58284549	58284749	+	961.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	211963.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	4.61921760605299	4.57274917463955	4.74349097043711	4.71019177469751	4.90249606622717	4.75463702409926	5.37376631315417	4.92287119448113	0.695681505196144	0.0437511834637626	0.21293439232596
Merged-chr16-94011447-4	chr16	94011330	94011530	+	836.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2593.0	NM_019500	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	3.89033803562981	3.91029097492475	3.78602277333881	4.22794030054412	4.02642968891681	3.90540958964921	3.59883221932782	4.07536767935823	-0.170491847521947	0.716582560385675	0.886643627014433
Merged-chr2-77284615-4	chr2	77284517	77284717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAA)n|Simple_repeat|Simple_repeat	-4025.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	7.51196729613326	7.46573089831427	6.74995300586775	6.87211657410429	7.43124281639118	7.4313076001108	7.14145832115994	7.02865973432652	0.1120553915298	0.649072114993923	0.852536691167674
Merged-chr7-126144518-4	chr7	126144427	126144627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 8 of 23)	MTD|LTR|ERVL-MaLR	55974.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	6.50324061210713	6.85463327351926	6.2270926176933	6.54114530249671	6.54910155902666	6.52231377301728	6.5197302570696	6.35954271651159	-0.093132996722682	0.686137775803518	0.871774647810045
Merged-chr12-3890950-2	chr12	3890850	3891050	+	899.900024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153743)	promoter-TSS (NM_153743)	-794.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	3.66908653391616	3.70749129264426	3.61592091930609	3.71104069341457	3.84735898978733	3.78683181976798	3.54678318073325	3.55809851159325	0.0565700487513245	0.904224628668227	0.964559678221358
Merged-chr12-85280392-4	chr12	85280301	85280501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025421)	promoter-TSS (NM_025421)	34.0	NM_025421	66204.0	Mm.311985	NM_025421	ENSMUSG00000008822	Acyp1	1110039O14Rik|AI325944	acylphosphatase 1, erythrocyte (common) type	protein-coding	8.50913654587635	8.88287904097781	8.14149680161229	8.06668041594587	8.50199889625327	8.58926057615601	8.21300868606344	7.97934003778862	-0.122551485300449	0.595851028204283	0.824207709910075
Merged-chr2-27677776-3	chr2	27677658	27677858	+	867.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	CpG	557.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	3.76593248877456	3.99113959072288	4.17651766144864	3.50065513338917	3.58196970704575	3.99236374434561	3.69697377712673	3.86730923269591	-0.244213180851987	0.624400625480917	0.839393596001854
Merged-chr2-27381449-1	chr2	27381349	27381549	+	674.0	f0_balb.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	46159.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	3.20368173568548	3.33789312703578	3.37320122811948	3.42001441392141	3.09680333807813	3.48551942231893	3.13235267350902	3.14115576854652	-0.461495528596017	0.403644773948476	0.700922982752502
Merged-chr1-171044729-5	chr1	171044640	171044840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14654.0	NM_001356511	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	5.35849786777742	5.54231500995085	5.48274815556542	5.53781411592584	5.80493642216726	5.79676267186714	5.76458470656472	5.94123310286699	0.563743316544338	0.0279651877973686	0.159979907029317
Merged-chr2-30135451-4	chr2	30135367	30135567	+	882.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146252, intron 2 of 11)	intron (NM_146252, intron 2 of 11)	1721.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	3.99753669509005	4.08834682033184	3.77993156594793	4.16309572403961	4.33045113327814	4.06890439405529	4.24920811164969	4.04502254554477	0.404856438567179	0.340646011825813	0.649743209420133
Merged-chr13-85596822-1	chr13	85596722	85596922	+	953.0	f0_balb.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-307336.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	3.39712835845802	3.17528476310933	3.80959822756517	3.87298180911797	3.43688128961583	3.44936939959488	3.70214771387228	3.45505539858189	-0.286660639182361	0.606976020887044	0.829744112441548
Merged-chr4-43973681-4	chr4	43973583	43973783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 4 of 4)	intron (NM_027450, intron 4 of 4)	-9821.0	NM_001002787	442829.0	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	8.4110813028169	8.44797176404759	8.2009365660843	8.35582051399833	8.40273786790586	8.37862562875532	8.35785860369085	7.99189172884708	-0.0793757924769876	0.638692476091414	0.84731839493744
Merged-chr2-84476783-3	chr2	84476701	84476901	+	899.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177320)	promoter-TSS (NM_001177320)	-26.0	NM_001177320	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	4.02990702451699	3.73720610343282	3.98693805628304	3.62189610682016	3.59344988590605	3.49210616098317	4.20731303007813	3.62927202641803	-0.246491541303231	0.631136211824616	0.843254641427651
Merged-chr15-103313584-4	chr15	103313499	103313699	+	923.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013866)	TTS (NM_013866)	-3161.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	5.03647555181837	5.43811814813922	5.13339038844539	4.62939375675469	4.86545645821204	5.39387975077346	4.58656042686376	4.69367008099775	-0.319784461838866	0.415860494183535	0.709930066326653
Merged-chr4-117916635-3	chr4	117916573	117916773	+	677.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1674.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	2.85929151451616	2.57827846014702	2.99297014832169	2.61010988319655	3.41447111161405	3.28645755279532	3.21104443025925	3.05334390467616	2.1173588372621	0.000773811099513788	0.01095665411822
Merged-chr9-57655912-4	chr9	57655788	57655988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2257.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	5.47326660395565	5.46953787661168	5.09985401192845	5.30272820284048	5.47946460973776	5.31288656237736	5.33460833752017	5.57391812390033	0.158121086665881	0.58065932371009	0.815861939682199
Merged-chr12-108636203-3	chr12	108636114	108636314	+	901.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 1 of 14)	intron (NM_001163396, intron 1 of 14)	461.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	4.03841371554429	4.08105324216862	3.9365334237609	3.82120566239114	4.07051891596461	4.16442218423455	3.86666681689783	4.64894463098778	0.649847414047922	0.146294628388527	0.426417090666132
Merged-chr10-44599687-6	chr10	44599551	44599751	+	972.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140903.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.25659624371097	4.63801705234857	4.43779238897716	4.30500402536113	4.44343319267707	4.65076523437289	4.03215044783391	4.66510990507574	0.125772920512008	0.755184251118849	0.903634896880696
Merged-chr3-97736444-2	chr3	97736344	97736544	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 24 of 46)	intron (NM_001039376, intron 24 of 46)	31570.0	NM_178080	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	2.89708592031344	2.68471355158579	2.83931229078656	2.53484192170539	2.58349446989294	2.88696249224889	2.70521099075954	2.71316127229085	-0.0735240814314408	0.911176431980411	0.966911184949593
Merged-chr5-66144464-4	chr5	66144353	66144553	+	923.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	6525.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	3.86929159989021	3.61888231263649	4.09377273898553	4.12531614071724	4.57396910145015	4.16895115382829	4.73921090407645	4.79032906679187	1.52358462160745	0.000705299514337354	0.0101810006349662
Merged-chr7-130546946-4	chr7	130546857	130547057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162855, intron 1 of 10)	CpG	424.0	NM_001162855	67872.0	Mm.21714	NM_001162855	ENSMUSG00000040331	Nsmce4a	2410003A14Rik	NSE4 homolog A, SMC5-SMC6 complex component	protein-coding	5.52127006304966	5.23967298924872	5.46698318423475	5.31089527831328	5.59544509638514	5.29132798052478	5.84325315570889	5.62196438155167	0.38911495883112	0.170713797148169	0.463921931697421
Merged-chr17-50491679-4	chr17	50491578	50491778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER105|DNA|DNA	-17869.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	5.39087626859354	6.21819023568972	5.82699042957317	5.58552046189319	6.13865238732261	5.721691636528	5.48757674027548	5.48160576648382	-0.0707944873876415	0.827656024684077	0.933903677361406
Merged-chr9-123927436-4	chr9	123927324	123927524	+	904.162476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41268.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	4.76671357318513	4.62519623597378	4.43705341837501	5.04980552360577	4.87074392143746	4.61226109165715	4.41853528546206	5.05397296823318	0.0181603569072463	0.96287168193713	0.986716902231301
Merged-chr2-118011914-4	chr2	118011826	118012026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	99276.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	5.72307469533529	5.13498851988399	5.55148502748627	5.51162470491621	5.37656755835268	5.46492167931429	5.57491767803555	5.59930958524531	0.0150613395587679	0.958322153573599	0.985142778641354
Merged-chr2-21200148-3	chr2	21200046	21200246	+	669.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027728, intron 1 of 4)	intron (NM_027728, intron 1 of 4)	5219.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	3.12517679044842	3.42808115573012	3.42269107544041	3.22696799555449	3.41940948854563	3.42463151408527	3.29952496144958	3.36662108095902	0.272485846683437	0.601927136570253	0.827350609957033
Merged-chr2-84626547-4	chr2	84626449	84626649	+	884.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	22931.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	4.61273849743438	4.82292973591057	5.4947508082761	4.7472114179983	4.75577774532377	4.36644243809512	4.32104073568384	4.17661864514709	-1.12252313414296	0.00931157153100245	0.0750269809831587
Merged-chr4-53826001-4	chr4	53825902	53826102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028053)	promoter-TSS (NM_028053)	-43.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	6.70322113945509	7.16744354282474	6.87209141745676	6.73397447492723	6.82615633801108	6.68842506097547	6.51179796232186	6.41595259564498	-0.358436709716581	0.113927353899076	0.373318991031321
Merged-chr2-4389506-4	chr2	4389416	4389616	+	868.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172475, intron 1 of 22)	intron (NM_172475, intron 1 of 22)	-11460.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	4.1650790966219	4.12523583550887	4.25951826241653	3.97793231147058	4.44102944722469	4.24219788583792	4.59007627866205	4.42590193841117	0.757620563735743	0.0502443002121295	0.232516679331589
Merged-chr4-9629365-3	chr4	9629250	9629450	+	649.450012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177856, exon 5 of 5)	3' UTR (NM_001177856, exon 5 of 5)	14367.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	3.2142534766126	3.115631482117	3.33653950027647	3.32638257800648	3.54795971983335	3.3900101552162	3.71578577190086	3.33479807187848	0.868897335047327	0.0984876966529619	0.343994301133918
Merged-chr4-109666872-4	chr4	109666751	109666951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301368)	promoter-TSS (NM_001301368)	-95.0	NM_001301368	12580.0	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin dependent kinase inhibitor 2C	protein-coding	7.14853326008346	7.12814941351888	7.20724431277522	7.44130772689515	7.23047061918766	7.428364168146	7.5625368425095	7.35075216945979	0.195251969713649	0.311045873613972	0.623133527665885
Merged-chr4-62360528-4	chr4	62360456	62360656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175090)	promoter-TSS (NM_175090)	40.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	9.09567997830263	9.3194033135132	9.33941468282476	9.19133555699624	9.23514119846245	9.38838231492227	9.36936137932698	9.14125245382978	0.0576723994836597	0.693799012892699	0.875570368758012
Merged-chr1-62724676-4	chr1	62724574	62724774	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	21357.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	5.13587840539267	4.97576298921649	4.95293509821519	4.97404757629416	4.86287285931036	4.40376879118567	4.50551020021132	4.69473072924312	-0.753613812445247	0.0312230570419165	0.171947851233004
Merged-chr7-28932679-4	chr7	28932590	28932790	+	916.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021895, intron 1 of 20)	intron (NM_021895, intron 1 of 20)	29642.0	NM_001360549	60595.0	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	4.27361727372573	4.44372241182487	4.7198512750617	4.42420273379483	4.12341510156668	4.4029588806419	4.55363903445177	4.71663205938998	-0.0279964410547953	0.943754084478227	0.979777019034972
Merged-chr11-94210291-4	chr11	94210190	94210390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1164.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	7.53373873357348	7.51810578645842	7.08303107128078	7.37475534965913	6.95461832771033	6.99255712400599	6.95999013351411	6.85355428667306	-0.614129023717186	0.00173591893598576	0.020953192122186
Merged-chr19-34152109-4	chr19	34152007	34152207	+	917.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024204, intron 1 of 5)	intron (NM_024204, intron 1 of 5)	13934.0	NM_024204	52024.0	Mm.183030	NM_024204	ENSMUSG00000024774	Ankrd22	5430429D21Rik|D19Ertd675e	ankyrin repeat domain 22	protein-coding	4.33692609609487	4.23412565890381	4.15095294747924	4.38262873071311	4.48958712470098	3.99629963391417	4.4012867271853	4.67485397874586	0.31182119432446	0.441658335099373	0.728581294354415
Merged-chr13-95890337-4	chr13	95890243	95890443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	1579.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	6.0513522982745	6.11364866154996	6.00918694271014	6.11151642811821	5.86758366395072	6.38605634076974	6.1800429032484	5.91381277512105	0.0271844900194463	0.912646294554814	0.967275429951564
Merged-chr9-63614313-4	chr9	63614218	63614418	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	11672.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	4.93504391407596	4.75023188790935	5.03828860957205	5.2470952939882	5.14165400946945	4.92115206769719	4.83977821904251	4.93256165634999	-0.0968800551574818	0.771915932285462	0.910606983064518
Merged-chr6-34876816-3	chr6	34876758	34876958	+	944.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135611, intron 1 of 3)	intron (NM_001135611, intron 1 of 3)	1207.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	4.14255852939381	3.84694642742486	4.40391539729977	3.96385484054352	3.55723158541781	3.56553929852567	3.90018639404172	3.75735602814677	-1.15138805391681	0.0172246898715954	0.115652881838533
Merged-chr17-24470274-4	chr17	24470181	24470381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025954)	promoter-TSS (NM_025954)	-192.0	NM_025954	67078.0	Mm.28541	NM_025954	ENSMUSG00000043445	Pgp	1700012G19Rik|AI481330|AUM|G3PP	phosphoglycolate phosphatase	protein-coding	8.27233165494947	8.57307251091898	8.10117782914242	8.15547999535854	8.23712244390227	8.59284718393985	8.52542027483419	8.37302397619477	0.187344165560119	0.299718295990141	0.611945631067702
Merged-chr18-83981369-4	chr18	83981273	83981473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105189.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	6.8272289846627	6.85843557578528	7.35282814338573	7.39427142136654	7.4580467155093	7.12225000684744	7.86869993689334	7.22202515564203	0.417669841702066	0.0916868535034676	0.33099654204223
Merged-chr7-101883262-3	chr7	101883177	101883377	+	865.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291353, intron 1 of 5)	intron (NM_001291353, intron 1 of 5)	1952.0	NM_001291353	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	3.74607912162767	4.00255134254333	4.18047875295917	4.08021822177838	4.40645264928924	3.68055068250217	3.78778034081593	3.74459346406791	-0.150239903095247	0.763521177411327	0.907229465260431
Merged-chr3-84039400-4	chr3	84039318	84039518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172681, intron 1 of 34)	CpG	743.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	5.88912345462174	5.8778181258093	5.69656065935644	5.65023134643044	6.11382957680856	5.61613501249493	5.96692163861414	5.84027578186618	0.219726433669567	0.401247094122273	0.698895556405952
Merged-chr7-80202115-4	chr7	80202007	80202207	+	963.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	3666.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	5.14209386284446	5.08393776150813	5.49534853028968	6.00600063326092	4.96839202074316	4.93596326891088	5.01296050994658	5.384634621149	-0.762288858213304	0.0367852280582041	0.19103573237669
Merged-chr6-17286525-3	chr6	17286454	17286654	+	776.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016900, intron 2 of 2)	intron (NM_016900, intron 2 of 2)	5369.0	NM_016900	12390.0	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	3.13025532364378	2.96919306041466	3.01508906130799	3.04689324128177	3.05240977972122	3.18320988557514	2.94349497861102	2.8871422275298	-0.081639074487474	0.887846212938891	0.957936147561464
Merged-chr2-144600032-4	chr2	144599910	144600110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025314)	promoter-TSS (NM_025314)	57.0	NM_025314	66044.0	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DTD|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	7.39034664629455	7.54898262251699	7.29716446970003	7.54175045426338	7.48418819544724	7.58882087900449	7.84375386864588	7.80604699211972	0.304455524659577	0.0998026161057467	0.34656888403894
Merged-chr9-35040780-2	chr9	35040680	35040880	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75948.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	2.56684943777399	2.49305869871895	2.34177884007965	2.39429766572848	2.84761828568841	2.74203904400612	2.74931041532295	2.92629495439814	1.91655232000858	0.00429249372275615	0.0423766172943218
Merged-chr7-112000322-4	chr7	112000195	112000395	+	956.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-23211.0	NM_133758	74996.0	Mm.16974	NM_133758	ENSMUSG00000059263	Usp47	4930502N04Rik|A630020C16Rik	ubiquitin specific peptidase 47	protein-coding	4.00917996174564	4.20603454200089	4.28869046079495	4.57306837604833	4.88767371296982	4.69507306596132	4.92280461689975	4.97406825600348	1.2189609278835	0.00208001179041415	0.0241036885217025
Merged-chr4-120406538-4	chr4	120406438	120406638	+	913.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013883, intron 1 of 16)	intron (NM_013883, intron 1 of 16)	1257.0	NM_013883	29871.0	Mm.427014	NM_013883	ENSMUSG00000000085	Scmh1	AI315320|AI851618|Scml1|Scml3	sex comb on midleg homolog 1	protein-coding	4.71496353863343	4.40755232914248	4.56417604070516	4.56446885518275	4.70788790155787	4.61129396623071	4.54323141990033	4.47815589566333	0.0650079877271143	0.854473571783641	0.945191372972774
Merged-chr4-107213598-3	chr4	107213494	107213694	+	825.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081272, intron 2 of 4)	intron (NM_001081272, intron 2 of 4)	4414.0	NM_001081272	546840.0	Mm.331755	NM_001081272	ENSMUSG00000070877	Ldlrad1	-	low density lipoprotein receptor class A domain containing 1	protein-coding	3.75011891591547	3.2604878076129	4.0032547532265	3.35700882556875	3.24413275269199	3.66837840106904	3.36216256196486	3.43345195376924	-0.614410467336604	0.277772990312146	0.589822221583767
Merged-chr13-45265002-4	chr13	45264901	45265101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124741.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	6.20680838611412	5.47244734450573	6.2764286805244	6.39549835183282	5.16204987406187	5.47633502369354	5.68963390021227	5.9290520915937	-0.88905743086335	0.0067259769574356	0.05911852754612
Merged-chr3-59344314-4	chr3	59344221	59344421	+	804.857178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162884)	promoter-TSS (NM_001162884)	-65.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	3.86906926233077	3.5391208064816	3.45718236887915	3.56816715343199	3.52163854998873	3.74574881802014	3.4448128331205	3.82247026902241	0.0781285472236307	0.874719283813294	0.952925927223413
Merged-chr12-52328220-4	chr12	52328139	52328339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152370.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	5.8011397958583	5.71242659954784	5.80215832538101	5.80145588768637	5.82212060767703	5.74845174028334	5.57207861246414	5.56858433981342	-0.150243588730033	0.555777125399879	0.801705036623952
Merged-chr1-191125981-4	chr1	191125881	191126081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	27567.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	6.72819279551644	6.7663174338494	6.89017067406358	6.46835770502337	6.29205082522435	6.65385714923362	6.46092566282373	6.80752008430894	-0.218310179774577	0.34735479093596	0.655453637603211
Merged-chr15-100679242-3	chr15	100679159	100679359	+	895.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 6 of 7)	intron (NM_033612, intron 6 of 7)	8661.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	2.99393244936399	3.20146527687822	3.17773900654894	2.61050580224616	3.12565135919163	3.23260190475949	3.22005144351684	3.117706404033	0.64996236648669	0.298457647466721	0.610580199725052
Merged-chr5-138686070-4	chr5	138685968	138686168	+	956.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63209.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	4.75509011600447	5.19858583678144	4.71258855759614	3.9272366164935	5.51759099271925	5.63397546812513	4.9289539763938	5.43312490008908	1.28493760290677	0.00229279086330531	0.0259936326466713
Merged-chr11-115427995-3	chr11	115427873	115428073	+	845.0277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183285, intron 4 of 5)	intron (NM_183285, intron 4 of 5)	7847.0	NM_183285	70382.0	Mm.276299	NM_183285	ENSMUSG00000016940	Kctd2	2310012I15Rik	potassium channel tetramerisation domain containing 2	protein-coding	3.20034460421699	3.3069357378387	2.81321628094109	3.10712536398044	2.98308480592036	3.31303918313112	3.13178367058314	3.08222832323055	0.0347101166665141	0.953387499761145	0.983409686773593
Merged-chr12-113031598-4	chr12	113031489	113031689	+	967.3500369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 1 of 23)	ORR1F|LTR|ERVL-MaLR	17081.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	4.78653611495763	5.28010229122487	5.11330668675595	5.08095205102844	5.18001298740605	5.11729027213103	5.088265823452	4.8247270664492	-0.030992491403466	0.923096191760552	0.97151895464601
Merged-chr5-62763341-4	chr5	62763239	62763439	+	942.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	2838.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	4.55328982719333	4.52339905735088	4.72594782713192	5.23501987508197	5.01672556177241	4.77730485570887	4.98876988563931	5.10270566247044	0.313068689919141	0.40936604157938	0.704986157609834
Merged-chr18-84849119-4	chr18	84849018	84849218	+	947.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2220.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	5.0551908712246	4.9394897291331	5.23580409079252	4.6345658396497	5.30197151886935	4.94503418515686	4.57550266852711	4.88053502631113	-0.0130074236861901	0.971943545373164	0.989801515809858
Merged-chr4-139193765-5	chr4	139193555	139193755	+	994.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271405)	promoter-TSS (NM_001271405)	-456.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	4.53748861277163	4.58832150690365	4.94685724709966	4.62180572518789	5.01675396574267	5.22062270942955	5.33400212575665	5.16763951092848	1.00269924228975	0.00208145075264199	0.0241060174295971
Merged-chr9-32478919-4	chr9	32478861	32479061	+	999.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	62491.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	4.8985773753977	4.87046090274736	5.35606894786428	4.955114473606	4.93891901559169	4.83716123748385	4.91189906149078	5.03486475423676	-0.184488212868072	0.573449237336755	0.811885495065
Merged-chr2-112197060-4	chr2	112196964	112197164	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	41166.0	NM_001011802	258022.0	Mm.377330	NM_001011802	ENSMUSG00000049758	Olfr1318	MOR245-16	olfactory receptor 1318	protein-coding	4.78323339015475	4.8617094029209	4.61716638727138	5.05042295669053	5.13622467039403	5.32491613719491	5.0076125409806	4.42373267580254	0.326440368646153	0.384798069901842	0.686253571524344
Merged-chr10-50612206-4	chr10	50612115	50612315	+	980.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 3 of 41)	intron (NM_198007, intron 3 of 41)	19546.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	5.11484458886549	5.08539103521853	5.30294766812145	5.54363224087767	4.98320629555459	5.38603623951535	5.2176029775337	4.93229548877315	-0.290442676131276	0.368857024797147	0.673271092689196
Merged-chr4-3779534-2	chr4	3779434	3779634	+	846.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	56121.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	3.30088964819217	3.17655488094931	3.24626443187486	2.8395818411071	3.18992471638658	3.17650130533306	3.23342450163744	3.24446884784675	0.273134025348745	0.634161168189147	0.845067847438589
Merged-chr9-104057312-3	chr9	104057203	104057403	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025692, intron 3 of 11)	intron (NM_025692, intron 3 of 11)	5818.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	4.94622386365041	4.91072834938314	4.854503239998	5.42040631330636	3.58275107328321	3.90678385749701	3.95762319869642	3.90844653665687	-3.21061376118702	1.31008427711855e-11	1.16127632330039e-09
Merged-chr1-53775263-3	chr1	53775139	53775339	+	888.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133810, intron 2 of 7)	intron (NM_133810, intron 2 of 7)	9976.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	3.73999244847524	3.58913658484372	3.41758226625914	3.74069607423732	3.1299949836609	3.81143925047364	3.4641932076592	3.63948032062579	-0.330684823781488	0.542051112393502	0.793636863705792
Merged-chr11-98948102-4	chr11	98947980	98948180	+	958.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177302, intron 2 of 9)	L1MB8|LINE|L1	8369.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	5.02927678241964	4.63827628451453	5.18869400055649	5.22752774645449	4.99484031453609	4.8630471116714	4.90099885188982	5.35194955801141	-0.012471310808618	0.971234807656437	0.989661202321986
Merged-chr7-81454563-4	chr7	81454486	81454686	+	827.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252526, intron 1 of 11)	CpG	172.0	NM_001252525	12877.0	Mm.273122	NM_007755	ENSMUSG00000025586	Cpeb1	AU024112|Cpe-bp1|Cpeb|mCPEB|mCpeb-1	cytoplasmic polyadenylation element binding protein 1	protein-coding	3.1290200070318	3.34419168974887	3.42530687002618	3.26633358942593	3.2754683607997	3.48456178913494	3.24387065491947	3.57200562677632	0.369786027440031	0.484941148277122	0.75893206189538
Merged-chr17-15826640-4	chr17	15826552	15826752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178615)	promoter-TSS (NM_178615)	-66.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	8.17108105474546	8.10346758447267	8.01432328686695	8.49455893707338	8.33469378297204	8.33767719626275	8.52304054590573	8.42337222027437	0.236163477148716	0.179988830654973	0.476331981602852
Merged-chr8-76901143-2	chr8	76901043	76901243	+	552.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028579)	promoter-TSS (NR_028579)	-522.0	NR_028579	102640923.0	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	-	predicted gene 10649	ncRNA	3.30813800505458	3.45213936805682	3.25126834268874	3.14849044388666	2.96753089567305	3.24010111327916	3.45148722572634	3.24956046569215	-0.211543092631388	0.707439273510515	0.882458028972081
Merged-chr6-113333852-2	chr6	113333752	113333952	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133926)	TTS (NM_133926)	6876.0	NM_010957	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	2.59395562947041	2.77276099419881	2.59417027624343	2.79664186271445	2.88362865123952	3.03822920665707	2.91726186817198	3.14313068267224	1.31415135764188	0.0417728652173802	0.20702901916919
Merged-chr10-81134449-4	chr10	81134340	81134540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1831.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	7.60130262044352	7.76753771954393	7.63765889479867	7.64850089350515	7.98473404712417	7.89862790238831	7.91225671084909	7.60625225296105	0.256820005352223	0.137865283128234	0.413018098423727
Merged-chr2-152805068-4	chr2	152804973	152805173	+	991.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	23416.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	5.09398199302491	4.68363217810452	4.90172213748487	4.8877980298049	4.58754111033051	4.92872124836455	4.80718162085055	4.86318115097885	-0.210501673922769	0.533145521943256	0.788480232425337
Merged-chr17-17973645-3	chr17	17973515	17973715	+	801.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3157.0	NM_008042	14294.0	Mm.378918	NM_008042	ENSMUSG00000079700	Fpr3	ALX|Fpr-rs1|Fpr-s1|Fprl1|LXA4-R|Lxa4r	formyl peptide receptor 3	protein-coding	3.2980293739875	3.28291476400973	3.29845510937816	3.2212225962109	3.22831717232045	3.35133253150544	3.28614126060849	3.60504760806886	0.360191606758777	0.492175046723538	0.76335556384627
Merged-chr16-22436306-4	chr16	22436196	22436396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358428, intron 2 of 12)	intron (NM_001358428, intron 2 of 12)	2072.0	NM_001358428	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	7.18931314485138	7.05259872636865	6.86848525907219	7.01110305853104	6.55376624094171	6.9897518676945	6.6119369783335	6.95535558108808	-0.351945937101035	0.0985793941896465	0.344094875393529
Merged-chr3-108856123-4	chr3	108856033	108856233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177091, exon 13 of 13)	3' UTR (NM_177091, exon 13 of 13)	-15631.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	6.74783555983996	6.98966242326578	6.73417093751203	6.33327711744488	7.2689668688167	7.12926695303383	6.90519796429564	6.58727499252855	0.408703020439143	0.10034396947935	0.347747378332471
Merged-chr6-125254296-4	chr6	125254207	125254407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-11218.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	5.96242495341619	5.39024298815676	6.06458286180717	6.09306055969439	5.53144060489313	5.6307355551615	5.59918745007531	6.09844150526661	-0.293007050544168	0.332096758610132	0.643114462430911
Merged-chr10-68136101-3	chr10	68135975	68136175	+	725.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	142651.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	3.17520295679326	3.26729655378826	3.29174173703517	3.23943861312569	3.23284381785089	3.22364319036588	2.97122320212487	3.49418098714529	-0.000877455233873005	0.998742368315504	0.999449015879545
Merged-chr15-98977503-4	chr15	98977416	98977616	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8449.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	4.79123070598356	5.10339357841706	4.75559099066829	4.58392668306009	4.7410503375883	4.77331980083991	4.44697578269402	4.46389897728153	-0.415476930589178	0.258702898062814	0.570489393947544
Merged-chr5-138731989-1	chr5	138731889	138732089	+	643.0	f1_balb.idr	Intergenic	RMER6BA|LTR|ERVK	-23092.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	2.78778200480568	2.95548682428673	3.23805157710115	2.47922741206554	2.17163147743939	2.30833900990438	2.28291823822109	2.44873307593884	-4.35648235071585	9.95319168172713e-05	0.00202243285958794
Merged-chr5-143490169-4	chr5	143490078	143490278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 9 of 14)	intron (NM_144915, intron 9 of 14)	25685.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	6.03591658343459	5.5416946007723	5.86290601339474	6.30594938269263	5.7989943248426	5.6957268351007	5.68564494726073	6.09212288285921	-0.245637170391452	0.397484530733218	0.695901008782461
Merged-chr14-66281029-4	chr14	66280933	66281133	+	992.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172498)	promoter-TSS (NM_172498)	19.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	5.62114256471194	5.0647868513739	4.93192051051605	5.27388258728385	5.44552020810052	5.29300616016764	5.33989350237183	5.18058967771113	0.134677205035581	0.669010674917805	0.863357017638244
Merged-chr3-138537551-2	chr3	138537451	138537651	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313980, intron 2 of 7)	intron (NM_001313980, intron 2 of 7)	10283.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	2.89337180217242	2.79922795302144	3.01021997188343	2.90388900584526	2.93875770215002	2.65027709352923	2.68935935854008	3.11495677731359	-0.16484130480267	0.797762874004151	0.921862017583033
Merged-chr13-107657829-3	chr13	107657723	107657923	+	876.42218	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-29574.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	4.23655654987955	4.18877340240054	4.19657748298717	4.31787562371356	3.37466585560582	3.75622480100273	3.8525412062865	3.86613832046893	-1.50506762519975	0.00142529090542513	0.0179178349271026
Merged-chr4-3659433-4	chr4	3659331	3659531	+	938.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040643, intron 3 of 3)	intron (NR_040643, intron 3 of 3)	2925.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	4.67502301943981	4.32684465642016	4.97203859522773	4.65612113951508	4.7893629943525	4.00971224333746	4.53805788999748	4.55622465888855	-0.350214777296468	0.404518003709918	0.701621244783961
Merged-chr2-167467557-1	chr2	167467457	167467657	+	692.0	f0_balb.idr	intron (NM_001304542, intron 10 of 15)	intron (NM_001304542, intron 10 of 15)	-25088.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	2.75389753905919	3.02339582854058	2.75424131357718	2.95950537086293	2.52601358981387	2.50791958310047	2.4017770819453	2.69032728392685	-1.86748655677666	0.0113092910272516	0.0861106202565185
Merged-chr13-111488845-4	chr13	111488695	111488895	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028487, intron 1 of 12)	CpG	1332.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	4.87519201634011	4.89060110175319	4.76686490218063	4.86994001051839	4.42396394297224	4.97702447319102	4.62622299059913	4.94048720031246	-0.216077514140729	0.538973736356848	0.791900331925773
Merged-chr3-104794132-4	chr3	104794041	104794241	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008619)	TTS (NM_008619)	5107.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	5.8756306989884	6.11787148533451	5.98299224076087	5.65730799140191	5.60594528860772	5.88622007393544	5.52126212615031	5.29246411880932	-0.525124941517436	0.0648579423788948	0.270857845453165
Merged-chr5-127617462-4	chr5	127617359	127617559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133895)	promoter-TSS (NM_133895)	-67.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	7.57213384432125	7.60682299593539	7.53714896004906	7.51283425273382	7.77696186978429	7.75946544341262	7.80034415134797	7.55925712556968	0.2288038242711	0.170955903888303	0.464071117837823
Merged-chr12-110778012-4	chr12	110777919	110778119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347428, intron 1 of 2)	intron (NM_001347428, intron 1 of 2)	40087.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	6.3134029092825	5.86695781143038	5.75383397089213	6.15045802372101	5.8220792546995	5.3402623888358	5.88896818794704	5.64466389341346	-0.556842827006275	0.0488713919009984	0.228540621780512
Merged-chr10-69306393-4	chr10	69306276	69306476	+	704.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46536.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	4.02374283579918	4.0564159785848	4.12937878412012	4.26800562189168	4.43386292266126	4.61178756213796	4.25381570235098	4.62289862925433	0.83341735550273	0.0354246279019998	0.186846208924524
Merged-chr12-117586252-4	chr12	117586125	117586325	+	981.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 7 of 27)	intron (NM_175930, intron 7 of 27)	69746.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	4.98744336084472	4.84923733083285	4.6209243086634	5.11672274137923	4.75982672052635	4.8368507666638	4.86545201054231	4.53134938576279	-0.3458772635215	0.321201289178488	0.632926759819671
Merged-chr13-106998795-4	chr13	106998693	106998893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008442, intron 1 of 21)	intron (NM_008442, intron 1 of 21)	23321.0	NM_001145779	16563.0	Mm.355686	NM_008442	ENSMUSG00000021693	Kif2a	C530030B14Rik|Kif2|Kns2|M-kinesin	kinesin family member 2A	protein-coding	6.19346366706148	5.56426953224721	5.83887381628413	6.26649114120947	5.92801259815062	5.80750785740165	5.98806069787215	5.90519641501112	-0.157117149493345	0.569635972813669	0.809451796082798
Merged-chr12-110979121-4	chr12	110978996	110979196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361917)	promoter-TSS (NM_001361917)	-56.0	NM_001361916	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	7.61525491264945	7.63353546508114	7.625050840922	7.67515274028205	7.54263162497801	7.52882444866063	7.55340290505773	7.37748086538653	-0.179612513599862	0.28106622518776	0.593153291080506
Merged-chr4-128664170-4	chr4	128664042	128664242	+	870.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	9440.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	4.3187991620228	3.79198447886502	3.80950757515355	3.24861425048182	4.04709333457894	4.03458765186587	3.62869244439478	3.58046036725216	-0.0141432931026601	0.979753260958944	0.992752108443018
Merged-chr4-56831256-3	chr4	56831161	56831361	+	979.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018761, intron 8 of 18)	intron (NM_018761, intron 8 of 18)	-28930.0	NM_026079	230233.0	Mm.282743	NM_026079	ENSMUSG00000028431	Ikbkap	3110040G09Rik|6030413P05|C78473|Elp1|IKAP	inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated protein	protein-coding	3.44465531742933	3.38352567833449	4.02237073379104	3.77578174673415	3.48004418261923	3.62082654535732	3.49131780572107	3.61363239610548	-0.421746169900663	0.415846883717711	0.709930066326653
Merged-chr13-69655569-1	chr13	69655469	69655669	+	552.0	f0_balb.idr	Intergenic	Lx6|LINE|L1	43553.0	NM_145354	28114.0	Mm.260009	NM_145354	ENSMUSG00000021595	Nsun2	D13Wsu123e|Misu	NOL1/NOP2/Sun domain family member 2	protein-coding	3.0823061548651	2.76210380122072	2.91722238732537	2.88396880147685	2.53303276719475	2.68848762461374	2.9060188529801	2.85544406110614	-0.770818528489559	0.242554222191773	0.553291388378231
Merged-chr13-6633658-4	chr13	6633572	6633772	+	893.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019703, intron 2 of 21)	intron (NM_019703, intron 2 of 21)	15099.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	3.9550994554878	3.91053168088225	4.30666629804343	4.31959781198891	4.90929978824364	3.96004810525994	4.59454865272451	4.3039356079832	0.835160258592373	0.0708250811695133	0.285348868091062
Merged-chr2-164792541-4	chr2	164792460	164792660	+	950.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133240)	TTS (NM_133240)	6539.0	NM_133924	101113.0	Mm.295647	NM_133924	ENSMUSG00000050373	Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding	4.19452361589737	4.11928657110489	4.24431197452712	4.53886231622826	4.65389080318004	4.21683091750834	4.66575090011044	4.61549339377505	0.577053593700797	0.151548515684473	0.435243374673383
Merged-chr13-51958553-4	chr13	51958455	51958655	+	800.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111880.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	3.68562803112589	3.58859230495679	3.26402552103069	3.49128889804781	3.42977010402984	3.75263078845001	3.85983402743112	3.96081212935932	0.755680011555894	0.136559765213097	0.411042630338623
Merged-chr9-118082941-4	chr9	118082863	118083063	+	762.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026442, intron 2 of 3)	intron (NM_026442, intron 2 of 3)	42441.0	NM_013727	27215.0	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	3.57745347958688	3.35160967477739	3.57794660496962	3.60364468281297	3.61647570882476	3.46093249378948	3.45543283548043	3.76913482161997	0.161026642025472	0.744704360090115	0.899328339302935
Merged-chr15-81021609-4	chr15	81021505	81021705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 6 of 13)	intron (NM_001082536, intron 6 of 13)	43840.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	7.28825734236443	7.37444731399931	7.36867954403547	7.17336853164944	7.0481530639368	6.89534444668104	7.15793694894258	6.83465860343874	-0.415054399771391	0.0302149134405175	0.168073883495253
Merged-chr4-6445283-4	chr4	6445188	6445388	+	899.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	8983.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	3.68286403171575	3.82684164094608	3.56324645213777	3.79002292489413	4.13368524349224	4.06500704556199	3.87852086728008	3.94055803188115	0.798837909654147	0.0725592680233876	0.289598303164557
Merged-chr15-76607658-4	chr15	76607571	76607771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164173)	promoter-TSS (NM_001164173)	-80.0	NM_001164173	94230.0	Mm.45141	NM_053193	ENSMUSG00000034022	Cpsf1	CPSF160	cleavage and polyadenylation specific factor 1	protein-coding	7.13222808820973	7.35974482456979	6.77854484694447	6.67299080729416	7.20329297537495	7.13917587845917	7.12020227886392	7.28930439574358	0.250531041505291	0.264404543955507	0.576455127446606
Merged-chr5-121594097-4	chr5	121593999	121594199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308450)	promoter-TSS (NM_001308450)	-275.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	5.97124153795184	5.79921094914777	5.82103892186042	5.81277564677721	5.30778498736305	5.59732252506929	5.81397821394962	5.61845249353753	-0.439180416632809	0.101974234938377	0.350546897936767
Merged-chr4-156255155-4	chr4	156255051	156255251	+	947.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355709, intron 1 of 10)	intron (NM_001355709, intron 1 of 10)	191.0	NM_001355709	231004.0	Mm.406833	NM_173736	ENSMUSG00000096351	Samd11	BC026991|mr-s	sterile alpha motif domain containing 11	protein-coding	5.26067556109757	5.13243532107297	5.11887190900145	5.47865808723201	4.32207590215676	4.49269039381439	4.3400638756902	4.91965889711671	-1.50387545764529	3.85860624229234e-05	0.000903459650395153
Merged-chr3-139074871-4	chr3	139074746	139074946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 1 of 13)	CpG	355.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	5.28438429792052	5.35605398254348	5.45190214544688	4.93826309955448	5.20680884390301	5.0869369057463	5.34441540489106	5.08984563039778	-0.121088711833932	0.700638635203753	0.879297715090228
Merged-chr9-66593147-4	chr9	66593068	66593268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302116)	promoter-TSS (NM_001302116)	-53.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	7.42721905448871	7.55854308922202	6.6954256376435	6.72892414011531	7.83393301864595	7.65278155810693	7.55260762754182	7.46106227768102	0.638260587632048	0.0113723950537423	0.0864752739464364
Merged-chr15-11995300-7	chr15	11995208	11995408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011294, intron 1 of 4)	CpG	699.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	5.61881759875312	5.30578800848781	5.86011052180455	5.17540312655903	5.79324471842448	5.79529568609819	5.64283248572863	6.00019232585737	0.531284827077391	0.071660397078732	0.28752623470502
Merged-chr17-24015818-5	chr17	24015613	24015813	+	789.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17613.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	2.64101736971406	2.62322648473358	2.83565109536916	2.36522109396156	2.72766006520512	2.94624444200831	2.76368575231968	2.89284644247892	1.05496026484445	0.115625249724441	0.376292608394939
Merged-chr5-36575470-3	chr5	36575390	36575590	+	996.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	6907.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	3.31797368107043	3.01702297261567	3.24714301196404	3.29204705899396	4.23735762045271	3.91003936227337	4.03138222210578	3.92285229441771	2.52890613429867	3.0498788893767e-06	9.58442955703946e-05
Merged-chr9-100454372-4	chr9	100454268	100454468	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32105.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	5.82499981707339	6.0818656637749	5.54543643399222	5.40668052197528	6.18586854145398	5.74913953260724	5.65175130976942	5.39311393604806	0.0940260614773474	0.769468444263302	0.909742530773464
Merged-chr14-61707200-1	chr14	61707100	61707300	+	665.0	f1_balb.idr	Intergenic	Intergenic	-24827.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	3.07385696273722	2.98642711963731	3.13980919246059	3.31911704638481	3.31759356944187	3.31449000639796	3.50923966075181	3.5227603469505	0.967745727909377	0.0836763381764119	0.31448323961449
Merged-chr16-62834143-4	chr16	62834053	62834253	+	859.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026577, intron 1 of 9)	L2a|LINE|L2	12887.0	NM_026577	68146.0	Mm.96833	NM_026577	ENSMUSG00000022911	Arl13b	A530097K21Rik|A930014M17Rik|Arl2l1|C530009C10Rik|hnn	ADP-ribosylation factor-like 13B	protein-coding	3.49420985184355	3.83954109662854	3.43018357382014	3.79664378364801	4.08971047601173	3.73246445085627	4.0312806300608	3.66929547616982	0.682597028366206	0.16904917020137	0.46161486940974
Merged-chr6-149120068-3	chr6	149119942	149120142	+	869.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18362.0	NM_177192	320560.0	Mm.426874	NM_177192	ENSMUSG00000030313	Dennd5b	9330160C06Rik|AI852444|D030011O10Rik|Gm17524	DENN/MADD domain containing 5B	protein-coding	3.76375469300315	4.05057532827868	3.81573561158151	3.81486169674009	4.04371763787222	3.58665348050069	3.74925639138983	3.70867265284281	-0.200682892498749	0.669891460110012	0.863713564883384
Merged-chr11-75586433-4	chr11	75586331	75586531	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1648.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	5.34606485666889	5.27154720910766	5.16456405222215	5.23278162174465	5.35086759111199	5.05166939836009	4.92831569311617	5.4771810028053	-0.0466928855163407	0.879438892655795	0.954842749021429
Merged-chr17-45630208-6	chr17	45630163	45630363	+	875.3472289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013767)	TTS (NM_001013767)	-28161.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	2.93014364354096	3.11762882649299	2.93050763149797	2.60643488545668	3.17347643794827	2.7634865453804	2.85774617086174	2.98916131055778	0.240389804548715	0.711916998366737	0.884700502034922
Merged-chr13-111808936-2	chr13	111808836	111809036	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011945)	promoter-TSS (NM_011945)	57.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	5.04672810105655	5.05967541996155	5.08251751242183	5.18969656843967	5.38924532764404	5.07582004288258	5.46356037903782	5.27055672054401	0.385783734138671	0.19425351147086	0.494661229714667
Merged-chr12-110417415-4	chr12	110417268	110417468	+	952.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-29811.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	4.32935697554763	4.29810232699927	4.73610561833461	4.22770396136577	4.2310619116834	4.10701001206726	4.31055517222367	4.32730728639873	-0.373165029777059	0.354978661904708	0.661579026385505
Merged-chr4-133847968-3	chr4	133847861	133848061	+	989.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001285506, exon 21 of 21)	3' UTR (NM_001285506, exon 21 of 21)	26770.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	3.18311589241303	3.15997144158154	3.18347251178691	2.71470767658765	4.99121823434772	4.34637131098078	4.22839493843594	4.69810216333982	5.36807025612025	4.22221397014914e-17	9.63246692888608e-15
Merged-chr19-41274665-3	chr19	41274486	41274686	+	870.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 16 of 16)	ORR1A4|LTR|ERVL-MaLR	-10582.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	3.25579890568436	3.13895133816364	3.25623785902908	2.67168649251731	3.28400393871918	3.17571199101047	3.81524092627147	3.52755521747877	1.35758499314183	0.0288639131206657	0.163237285238826
Merged-chr13-60710154-3	chr13	60710053	60710253	+	995.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	RSINE1|SINE|B4	76211.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	4.69996302247735	4.8761263741137	4.55797960689725	4.78163321922906	3.70059736511433	4.06791963565273	4.19477797144638	3.9976137332724	-1.87395761497087	8.87230632003593e-06	0.0002475585619576
Merged-chr11-121743362-4	chr11	121743262	121743462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40935.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	6.04858416583467	5.70571574178774	5.73875081543391	5.93480644550146	5.75232370217142	5.66761342516557	5.60545821328189	6.02552031435383	-0.154039833179422	0.558235897176481	0.8030434967081
Merged-chr2-166757396-2	chr2	166757296	166757496	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36371.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	3.11327230643644	3.16139702690148	3.22952000910972	3.10236895317467	3.3925244154107	3.22358645262298	2.90994499696048	3.1121205570217	0.113452021775673	0.842969636048311	0.940323698985438
Merged-chr7-143832511-4	chr7	143832414	143832614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007856, intron 2 of 8)	intron (NM_007856, intron 2 of 8)	9347.0	NM_007856	13360.0	Mm.249342	NM_007856	ENSMUSG00000058454	Dhcr7	AA409147	7-dehydrocholesterol reductase	protein-coding	5.90362847255924	5.97874851239762	5.5274407041032	5.64781449926472	5.94426351749146	5.67547248503073	5.80798676959452	5.58078435265065	-0.00563113688080091	0.983430691806006	0.99401617716391
Merged-chr15-84770326-4	chr15	84770235	84770435	+	851.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205334, intron 12 of 12)	intron (NM_001205334, intron 12 of 12)	-50069.0	NR_040347	328576.0	Mm.400211	NR_040347	ENSMUSG00000116396	Gm20556	A430075N02	predicted gene, 20556	ncRNA	4.36969471377902	4.42210238774482	4.46054211107415	4.54530432120926	4.67490666224514	4.40303668694823	4.30411575943479	5.14485343128541	0.482661855247603	0.227456668346191	0.536115043419104
Merged-chr11-98400351-4	chr11	98400275	98400475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033537, exon 1 of 8)	exon (NM_001033537, exon 1 of 8)	115.0	NM_001033537	320655.0	Mm.86519	NM_001033537	ENSMUSG00000038208	Pgap3	CAB2|D430035D22Rik|Perld1	post-GPI attachment to proteins 3	protein-coding	5.93414827699448	6.39160873731703	5.17732723624491	5.56924842499854	5.96228518777875	5.77471877357609	5.51316494749369	5.47818166185956	-0.233872633698607	0.502720796261073	0.769878085954236
Merged-chr16-87676425-3	chr16	87676350	87676550	+	818.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-22504.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	3.70604013131109	3.78614500322303	3.49972398276975	4.0266870962189	3.17862541432395	3.14785616348922	3.69020460626989	3.11105918504444	-1.61026334125603	0.00655991139488961	0.0579602964186736
Merged-chr7-135793112-4	chr7	135793056	135793256	+	818.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76777.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	3.58995611616616	3.59999753682178	3.47470707087257	3.64571410278094	3.6242251108617	4.00722094581626	3.63001270977284	3.58848726544651	0.414776382000935	0.38840867835638	0.688981838974675
Merged-chr7-24481942-4	chr7	24481846	24482046	+	984.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153112)	promoter-TSS (NM_153112)	-77.0	NM_153112	260299.0	Mm.178322	NM_153112	ENSMUSG00000054793	Cadm4	Igdf4c|Igsf4c|Tsll2	cell adhesion molecule 4	protein-coding	5.44910782242652	5.65361191031783	5.01974744201398	5.01453814794188	5.23446988610265	5.19678443396293	5.0661541891613	5.08740290873171	-0.285974480251463	0.385428181817253	0.686786976257204
Merged-chr6-148322772-4	chr6	148322681	148322881	+	920.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198967, intron 8 of 19)	intron (NM_198967, intron 8 of 19)	-31875.0	NR_003634	66184.0	Mm.391542	NM_025405	ENSMUSG00000063171	Rps4l	1110033J19Rik|AA407494|Rps4y2	ribosomal protein S4-like	pseudo	4.50512973446004	4.01025182194216	3.91971219911819	4.45674223192916	4.05126156590919	4.09930066190257	4.37205419004495	4.34959748483331	-0.0875991507318094	0.841115825630278	0.939525416908854
Merged-chr15-101210291-2	chr15	101210191	101210391	+	991.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007395, intron 8 of 8)	intron (NM_007395, intron 8 of 8)	-10956.0	NR_045996	105968.0	Mm.120798	NR_045996	ENSMUSG00000115944	AU021063	-	expressed sequence AU021063	ncRNA	2.04196441440849	1.99642535665882	2.2622245204848	1.89924899007449	2.15338738236317	2.36851396912727	2.38085400809876	2.38972373149184	1.86279954913661	0.0210768632922744	0.132622882980976
Merged-chr18-69280565-3	chr18	69280465	69280665	+	837.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63927.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	3.1096569278377	3.0613893920561	3.38082953304848	3.45264526788571	3.201081587952	2.79200212830768	3.09915344494442	3.1085116553139	-0.797823082755336	0.197743191840724	0.499070386139272
Merged-chr16-57555912-4	chr16	57555825	57556025	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	6683.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	4.76299156167866	4.52149200278942	4.98519506872962	5.52874966001284	4.95503860220472	4.9402530483636	4.92691116927428	4.87599442741551	-0.206554230814117	0.595285378855862	0.823855115901391
Merged-chr17-27037828-2	chr17	27037746	27037946	+	855.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8587.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	2.40519401750076	2.1968962501805	2.48090368126391	1.9989248939509	2.65425380332991	2.7994055025274	3.09683617831118	2.61921829611529	3.23829633784645	0.000230141496503532	0.00407948297877465
Merged-chr9-58537978-4	chr9	58537870	58538070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133983, intron 1 of 6)	(A)n|Simple_repeat|Simple_repeat	2970.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	5.25208978709216	5.2780259733766	5.40291042917889	5.05592617362182	5.51441045584041	5.4892853840472	5.37589005626147	5.39913317751724	0.381638141315388	0.180083049960581	0.476417502756723
Merged-chr14-75728820-2	chr14	75728720	75728920	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177381, intron 13 of 22)	intron (NM_177381, intron 13 of 22)	25673.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	3.10533146034846	2.82687734891104	3.44668237162444	3.13546275105534	3.19619843673903	3.45805393107408	3.32890825103683	3.34076506968259	0.689815642978834	0.235045661538041	0.54500224434485
Merged-chr13-60895530-4	chr13	60895413	60895613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001145801, exon 4 of 4)	3' UTR (NM_001145801, exon 4 of 4)	1934.0	NM_007797	13025.0	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	5.19497824354371	5.47533046565775	6.01590314955052	6.23089021633318	5.47801307127571	5.41721229546039	6.15322958195932	6.1982134775457	0.0906608867226389	0.804473774301204	0.92476806816837
Merged-chr11-109347782-4	chr11	109347654	109347854	+	917.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027883, intron 1 of 1)	intron (NR_027883, intron 1 of 1)	887.0	NR_027883	67927.0	Mm.394490	NR_027883	ENSMUSG00000099630	1700096J18Rik	-	RIKEN cDNA 1700096J18 gene	ncRNA	4.50429516831263	4.66146641893973	4.65728360447048	4.60719472599821	4.48707645941169	4.36325409999996	4.21819118294601	4.28226239271745	-0.598307150561144	0.106385700862028	0.359530329582105
Merged-chr7-89411516-4	chr7	89411427	89411627	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7161.0	NM_008055	14366.0	Mm.86755	NM_008055	ENSMUSG00000049791	Fzd4	Fz4	frizzled class receptor 4	protein-coding	6.42657773894794	5.9613492774014	6.50272224357794	6.79633435054321	5.45028498248397	5.34438889930716	5.51834175917698	5.71558562910306	-1.51770220030268	1.34760698330691e-07	5.61929217719991e-06
Merged-chr14-69813397-3	chr14	69813304	69813504	+	858.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7859.0	NM_153514	246710.0	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	3.32593870521502	3.3292211320772	3.55984533454345	3.60862819105948	3.29688306452018	3.78121993386935	3.6946045425568	3.6101181141041	0.424055141755862	0.415834823844509	0.709930066326653
Merged-chr2-165947774-4	chr2	165947694	165947894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44843.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	5.27464100308392	4.90782391410245	5.27554743251751	4.99216259906954	5.43517155359832	5.65700679937236	5.88588290336622	5.74769424962408	1.01663119308969	0.000546570676945639	0.00828457287357615
Merged-chr7-80203730-4	chr7	80203619	80203819	+	960.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	5278.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	5.49247894382787	5.54616705442219	5.79924719949089	6.16428640094532	5.59544862027967	5.06678412623866	5.57548066628334	5.65156933960373	-0.502695034485347	0.112670072298758	0.371164117006215
Merged-chr18-10030034-4	chr18	10029943	10030143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360884)	promoter-TSS (NM_001360884)	106.0	NM_001038589	59025.0	Mm.329277	NM_021522	ENSMUSG00000047879	Usp14	2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375	ubiquitin specific peptidase 14	protein-coding	6.831098021539	7.08354568159839	6.96752481273576	6.89345545590413	7.07465570981257	7.13118488936186	7.2469600702311	6.89675366721305	0.203591482846182	0.295461992475539	0.607402066844282
Merged-chr8-106561275-4	chr8	106561171	106561371	+	837.233337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25872.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	4.20600000821278	4.02778416578201	3.88276114767818	3.85763052787377	4.08938772010749	3.70777777844716	4.14617758052445	4.02931931770929	0.0442172025685446	0.920232728925691	0.970412997665404
Merged-chr1-165763030-4	chr1	165762932	165763132	+	891.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011804)	promoter-TSS (NM_011804)	-726.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	4.27237729219935	4.30232293262213	4.0420731455386	3.93205735866804	4.14135916987802	4.00353089472143	4.12149934044849	4.46529409890927	0.147091444991164	0.727790494667296	0.891655472131974
Merged-chr13-55622189-3	chr13	55622065	55622265	+	921.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007596)	promoter-TSS (NM_007596)	-840.0	NM_007596	12328.0	Mm.2313	NM_007596	ENSMUSG00000021501	Caml	AI385748|Camlg	calcium modulating ligand	protein-coding	3.67838566929323	3.49192853814092	3.62929277837086	3.72298201305949	3.69169925616317	3.52258030073705	3.20620679115364	3.46582369074533	-0.471628755360396	0.362039209483405	0.667306442775501
Merged-chr6-136714328-4	chr6	136714213	136714413	+	956.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145067, intron 19 of 25)	MIR3|SINE|MIR	-52420.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	5.23976718826241	4.74089572513477	5.02931974063239	5.23798090001465	4.9479739037109	4.69171129937622	5.00479484499399	4.77224194597252	-0.431616419551794	0.202139355720754	0.50461441050349
Merged-chr13-24633326-4	chr13	24633212	24633412	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178658, intron 1 of 13)	(CAAAA)n|Simple_repeat|Simple_repeat	-5336.0	NM_001080381	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	4.26591991707357	4.64401525191949	3.73607584542526	4.41242212733889	4.22035921160673	4.15198085759942	4.28983960911112	4.0252924881139	-0.332056038298679	0.465579580656196	0.746032033757174
Merged-chr5-123906655-4	chr5	123906573	123906773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026603)	promoter-TSS (NM_026603)	-602.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	6.12339704227361	6.54680224082809	5.45358385673767	5.46784125639899	6.49678827780197	6.45059991540376	5.82719375690719	6.03713379532513	0.391089301213502	0.256916897457227	0.568647554151895
Merged-chr7-110840533-4	chr7	110840417	110840617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025999, intron 1 of 5)	L3|LINE|CR1	3864.0	NM_025999	67150.0	Mm.96867	NM_025999	ENSMUSG00000030788	Rnf141	2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230	ring finger protein 141	protein-coding	7.38487146785498	7.36489750537195	7.10632657978563	7.3648719329155	7.20827951840738	7.04618323943724	7.12929239879695	7.33186538735911	-0.175074825363591	0.348435672461225	0.656238106962862
Merged-chr8-33655467-4	chr8	33655390	33655590	+	939.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	2252.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	3.89964322063891	4.12140140628863	4.87963694082816	4.14025314348612	4.7424512596043	4.88447938843172	4.61735796237404	4.70986548470671	0.957273959048257	0.0264130793695875	0.154117654071583
Merged-chr2-160062684-4	chr2	160062599	160062799	+	854.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46046.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	4.56444024049556	4.3324147016244	4.60397442804644	4.75550190827441	4.28109304114664	4.3317432949084	4.88313463673732	4.30134574932509	-0.242709964169783	0.544330623747593	0.795184841840149
Merged-chr3-31390153-4	chr3	31390065	31390265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-79846.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	6.4290944815755	6.20598654255313	6.39463392766462	6.95455992053785	6.38201722433018	6.39874472315254	6.34379967665167	6.82728599315367	-0.0655583681160044	0.806153054925656	0.925358561244123
Merged-chr4-125962898-4	chr4	125962789	125962989	+	763.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40579.0	NR_015560	72395.0	Mm.112888	NR_015560	ENSMUSG00000085562	2610028E06Rik	BB043107	RIKEN cDNA 2610028E06 gene	ncRNA	4.4640234277261	4.36476900748047	4.16927846614528	3.90649500693277	4.14381313886101	4.70537379851899	3.94835596272682	3.96208409638927	-0.0262862521860208	0.954673073519548	0.983838959554429
Merged-chr16-4474626-4	chr16	4474492	4474692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	48483.0	NM_001347162	106393.0	Mm.35811	NM_175347	ENSMUSG00000022519	Srl	9830004M20Rik|AW108387|sar	sarcalumenin	protein-coding	5.04243934906465	4.75360082017928	5.3037837283901	4.91778195430085	4.68700943009039	4.76371749397063	4.77271627558552	5.13274601757643	-0.329268467425893	0.342352461353419	0.651380983250696
Merged-chr2-4889705-3	chr2	4889611	4889811	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175400, intron 3 of 8)	intron (NM_175400, intron 3 of 8)	8147.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	4.4494895466553	3.94730916063527	4.29123884404545	4.10355723261575	4.13353135980958	3.83642876092316	4.50066249300002	4.24547133069366	-0.00649481711376138	0.988195540390397	0.99539609138966
Merged-chr13-92977634-3	chr13	92977538	92977738	+	891.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20D|LTR|ERVK	-95666.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	3.59778936450866	3.46219105955393	3.59828238322938	2.87536285161036	5.3560142036998	5.46303487974235	5.94189702779805	5.70025256202597	6.16484634804577	3.81304726152308e-25	2.42329366989242e-22
Merged-chr11-101463105-4	chr11	101463018	101463218	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012037, intron 1 of 5)	intron (NM_012037, intron 1 of 5)	3081.0	NM_012037	26949.0	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	6.0935777777813	6.55634785862254	5.20772366787743	6.10084621697048	6.37175579734528	6.31122290818976	5.68233627417645	6.31673309595749	0.18757597310808	0.586040292830481	0.818516944044141
Merged-chr8-11215434-4	chr8	11215339	11215539	+	905.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009931, intron 40 of 51)	intron (NM_009931, intron 40 of 51)	-97366.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	4.55371527359955	5.00389348081544	4.93313164561982	4.89058133437913	4.72063963664127	4.64030670042006	4.77204575181377	4.71614265560699	-0.307592305139365	0.366204551790908	0.670768754295549
Merged-chr1-55807154-4	chr1	55807036	55807236	+	991.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124105.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	5.11411980793437	4.82279815202471	5.20958559935761	5.2476828511284	5.33256811835555	5.00034334411912	5.24270804092795	5.04434361124013	0.102978712171015	0.744702152880467	0.899328339302935
Merged-chr6-114869584-3	chr6	114869541	114869741	+	840.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	52180.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	3.29025905255822	3.21968073699932	3.63318282246684	3.33752576889879	3.0643379611208	2.85083273072857	3.03454091896293	3.44701466956611	-0.985326137879645	0.10945334570218	0.365263113300955
Merged-chr13-6636699-3	chr13	6636583	6636783	+	878.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019703, intron 1 of 21)	intron (NM_019703, intron 1 of 21)	12088.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	3.30276065145719	3.63081482502783	3.36198352684648	3.58189981965555	3.25514471034566	3.35281230812428	3.3495908264205	3.41640672056527	-0.504914523145101	0.334480816436509	0.64504619559279
Merged-chr4-99270144-3	chr4	99270044	99270244	+	863.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75997.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	3.89343350965142	4.50437769272076	3.95603131349305	3.7820004240478	4.78511741032341	4.5496383416374	5.04955334009359	4.61325648249123	1.62476164334426	0.000141609637449273	0.00271834746062615
Merged-chr10-68277853-4	chr10	68277760	68277960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	866.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	6.19428098407086	5.90053752519633	5.80823630812018	5.75782379147865	5.86944449943932	6.45791867399306	6.08763881071132	5.80411186658599	0.245417066772806	0.370751197213754	0.674962900058259
Merged-chr17-83705804-4	chr17	83705685	83705885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171053)	promoter-TSS (NM_001171053)	-378.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	6.17077691013921	5.05427866511982	5.65841346391267	5.8373611083429	5.6919906216872	5.66767936800111	5.93156415906313	5.91574479383915	0.106806125847132	0.740004864928911	0.897683586969888
Merged-chr6-140767489-4	chr6	140767387	140767587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140602.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	5.77192937205409	5.62125709781147	6.05827438104457	6.05116328347561	6.21627743562143	6.35499334237144	6.45374540265482	6.23223984572205	0.639017814617088	0.00997062304026777	0.0787766652662027
Merged-chr1-132477422-4	chr1	132477331	132477531	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172517)	promoter-TSS (NM_172517)	64.0	NM_172517	213464.0	Mm.132868	NM_172517	ENSMUSG00000026439	Rbbp5	4933411J24Rik|C330016J05	retinoblastoma binding protein 5, histone lysine methyltransferase complex subunit	protein-coding	5.23902452448559	5.17829095195371	5.23992443540376	4.91745917002487	5.05692497497414	5.32053431625157	5.09004936140117	4.97323996971643	-0.0417599161040424	0.893646895757595	0.960319159696255
Merged-chr10-76442324-4	chr10	76442235	76442435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008787, intron 1 of 41)	CpG	577.0	NM_008787	18541.0	Mm.251794	NM_008787	ENSMUSG00000001151	Pcnt	AW476095|C86676|KEN|Pcnt2|kendrin|m239Asp|m275Asp	pericentrin (kendrin)	protein-coding	6.98988579341506	6.67423740248448	6.42665192689412	6.51479503274665	6.85592951188818	6.74586227928413	7.27902451767132	6.59664082209423	0.329789452208012	0.178044648700928	0.473836973534737
Merged-chr17-71693413-4	chr17	71693308	71693508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177087, intron 6 of 19)	intron (NM_177087, intron 6 of 19)	20147.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	6.08372000366356	5.77770245454449	5.81274174456507	5.80446162763619	5.72040257192259	5.51650365543187	5.91527668100902	5.39863820201017	-0.348199792919101	0.200020073781598	0.501937971847898
Merged-chr18-9731692-3	chr18	9731611	9731811	+	916.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	24063.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	3.83909163858094	3.86930872039131	3.92768895558079	3.8330755539718	3.47317697529791	3.45987704257656	3.45991467850875	3.27580455877666	-1.45694134880067	0.00378181986290455	0.0383346847083
Merged-chr19-60999825-3	chr19	60999746	60999946	+	966.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 2 of 15)	intron (NM_018869, intron 2 of 15)	110097.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	4.4754698034251	3.8201055765532	4.20799939596225	4.54326702423855	3.65272255233474	3.99095790005464	4.00722683792508	3.74987900797798	-1.1954061599579	0.0119169435112156	0.0894304820525346
Merged-chr1-54898837-4	chr1	54898730	54898930	+	893.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	27557.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	4.62170406125417	4.24316961976398	4.34193118643217	4.79135509319712	4.43514745693529	4.32677917189818	4.07965552017325	4.46696784575838	-0.447387164874322	0.272167804978578	0.583708684767249
Merged-chr4-137609885-4	chr4	137609772	137609972	+	800.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355588, intron 6 of 26)	(TG)n|Simple_repeat|Simple_repeat	15700.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	3.7806309878842	3.29464555443124	3.83677707398976	3.49420216679352	4.37334565844899	4.01550573141585	4.27097988208486	4.36338264027705	1.82224637869	8.69649332039375e-05	0.00180468716633326
Merged-chr10-10458380-1	chr10	10458280	10458480	+	614.0	f1_balb.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	13934.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	2.76101182256105	2.84862976066261	2.69053200438211	2.54893165980164	3.00107577796078	3.12387794039759	2.99975120559485	3.01029589195785	1.49115708621899	0.0146921709978103	0.103300356386546
Merged-chr4-53083613-2	chr4	53083513	53083713	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 15 of 49)	MIR3|SINE|MIR	71733.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	2.83346576765422	2.73332393464772	2.7735901576087	2.47470555996135	2.91548351593763	2.60418736088423	2.63588703006064	2.83231142668422	0.265349295790106	0.691664026391706	0.874643862537935
Merged-chr10-100137561-4	chr10	100137456	100137656	+	921.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORSL|DNA|hAT-Tip100	121735.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	4.67884496459355	4.25378108508619	4.71606999929663	4.99652175229559	4.45495821080917	4.47256111255435	4.37096284588653	4.63901467639491	-0.47703897165124	0.224539000983524	0.532961903128127
Merged-chr7-25812441-2	chr7	25812341	25812541	+	752.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028775, intron 2 of 8)	intron (NM_028775, intron 2 of 8)	4089.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	2.91811662066658	3.21550323402374	3.29450598666048	2.8527969632361	3.11801871240588	3.51607084263573	3.16842699964754	3.23697780187249	0.724430308200637	0.2169186041836	0.523657769278767
Merged-chr2-155613562-4	chr2	155613459	155613659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001085378, exon 4 of 42)	exon (NM_001085378, exon 4 of 42)	2316.0	NM_001085378	668940.0	Mm.469980	NM_001085378	ENSMUSG00000074652	Myh7b	Myh14	myosin, heavy chain 7B, cardiac muscle, beta	protein-coding	6.3948990134399	5.9301304765037	6.02930210208812	6.16471236326308	6.09285792267225	5.45189683652741	6.1001198541355	5.9816776954821	-0.311255076064532	0.253423609373716	0.564721751011949
Merged-chr10-53346769-3	chr10	53346687	53346887	+	607.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001141927)	TTS (NM_001141927)	9101.0	NM_001141927	18821.0	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	3.03557123918418	2.87774986469142	2.70323971219794	3.06583505112692	2.76942392139846	3.20497618100589	3.02443710917882	3.14670593545084	0.448835601149344	0.476543654552783	0.753072705195429
Merged-chr8-83715160-4	chr8	83715092	83715292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197982)	promoter-TSS (NM_197982)	15.0	NM_197982	68278.0	Mm.28222	NM_197982	ENSMUSG00000005481	Ddx39	2610307C23Rik|BAT1|DDXL|Ddx39a|URH49	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	protein-coding	8.04380739146568	8.39206190213328	7.9829760328686	7.95962068211907	8.23711676129737	8.35686126228972	8.35617962546839	8.2154180578512	0.238087835681367	0.168873605307573	0.461341589819388
Merged-chr16-36642855-4	chr16	36642740	36642940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	23237.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	8.18680571775344	8.57248607647789	7.78189316563591	7.42980185374041	7.9488729651799	7.85315592184607	7.75962450639223	7.2096372389224	-0.43737534622093	0.106635940667244	0.360051212976317
Merged-chr9-85369722-4	chr9	85369652	85369852	+	973.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42602.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	5.890470823856	5.7599062324882	6.17707797518129	6.47322488833569	5.00192251352045	5.308292511847	5.34292407208455	4.95552349184768	-1.64336245517459	1.33732477286516e-07	5.58623474223998e-06
Merged-chr13-49371653-4	chr13	49371532	49371732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039179, intron 2 of 6)	intron (NM_001039179, intron 2 of 6)	30083.0	NM_001039180	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	6.27100282998511	6.00866309958851	6.07612930490343	6.43013153455228	5.94398372739184	6.07144122954355	6.12673433641708	6.21201624125987	-0.20831291936517	0.394227531412996	0.693379056693329
Merged-chr17-12999301-3	chr17	12999206	12999406	+	963.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-6767.0	NM_175394	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	3.63779546634078	3.67628248369356	3.81808290814677	3.58492176022223	4.38431604035789	4.37439418919977	4.22538224514345	4.15944137960743	1.67803414862476	6.40578060591384e-05	0.00139436409097352
Merged-chr9-111039168-4	chr9	111039084	111039284	+	902.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008522, intron 15 of 16)	intron (NM_008522, intron 15 of 16)	18060.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	4.14856009156599	4.07422509750018	4.19914319962076	3.92425130143756	4.66867205168569	4.4686973591833	4.81640101712322	4.37912041653363	1.24495048819492	0.00121533727732856	0.0157187120247749
Merged-chr9-108827103-4	chr9	108827006	108827206	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001359573, exon 1 of 36)	exon (NM_001359573, exon 1 of 36)	1061.0	NM_001359572	107934.0	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3	protein-coding	5.26731517381168	5.50997814660526	5.08923607765025	5.44667584120396	5.43063908116615	5.84085735462907	5.63866367040721	5.96587530533525	0.641710383255969	0.0300145485193545	0.16733810206463
Merged-chr17-26502483-2	chr17	26502383	26502583	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5989.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	4.81721148459677	4.75406886456172	4.45978757810109	3.9773729751388	4.50654487568692	4.67328127223966	3.94747381105283	4.01931907952955	-0.489455300957044	0.304752912829208	0.617284869021091
Merged-chr6-89415985-4	chr6	89415856	89416056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 5 of 6)	L2b|LINE|L2	-53343.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	5.43690710821631	6.05500565640149	6.11901648889864	5.93409522950806	5.79658119979935	5.9506874192054	5.74590196243991	5.66830064406086	-0.197865278936227	0.469960269412014	0.748770050732573
Merged-chr3-138442316-1	chr3	138442216	138442416	+	788.0	f0_c57.idr	promoter-TSS (NM_007410)	promoter-TSS (NM_007410)	-777.0	NM_007410	11532.0	Mm.3874	NM_007410	ENSMUSG00000028138	Adh5	Adh-5|Adh3|GSNOR	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding	3.97156648131752	4.07570689024296	4.21098117088426	4.14390135192534	4.1007992188354	4.42242358523504	4.14825737045973	3.96987574853425	0.153939396049119	0.7091953321601	0.883382805530322
Merged-chr12-81781291-4	chr12	81781170	81781370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177395)	promoter-TSS (NM_177395)	-100.0	NM_001174107	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	7.81402368157425	7.99007863875712	7.62330456664668	7.83631747197494	8.17625802280583	7.96944720585152	8.14868979543833	7.77869887679162	0.267701246831067	0.137227904690781	0.411967314550194
Merged-chr2-25356364-4	chr2	25356264	25356464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031843)	promoter-TSS (NM_031843)	-32.0	NM_031843	83768.0	Mm.21440	NM_031843	ENSMUSG00000026958	Dpp7	DPPII|Dpp2|QPP	dipeptidylpeptidase 7	protein-coding	6.0526404771815	5.84065656860545	5.64963989924013	5.7443037134442	6.28529312838703	6.36188275947849	5.80211217827395	5.61741908106316	0.370981766371267	0.194333522865975	0.494755332451119
Merged-chr12-102354140-2	chr12	102354040	102354240	+	968.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 4 of 9)	intron (NM_177620, intron 4 of 9)	70499.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	2.72441727268722	2.89961817727096	3.05985557793411	3.02786657690259	2.78889765138923	3.04563639093677	3.10530693060892	3.41639671293275	0.680093936772645	0.283072370550248	0.595258972633226
Merged-chr2-102638269-4	chr2	102638152	102638352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173749, intron 8 of 10)	intron (NM_173749, intron 8 of 10)	-20437.0	NM_001077514	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	6.13856072942669	6.10669280051026	6.44329823792321	6.24024967323991	6.04898962049754	5.71199434306007	6.10822049957568	6.37363946675934	-0.235977056318671	0.351729189817084	0.658976301197647
Merged-chr1-152913848-4	chr1	152913761	152913961	+	883.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11215.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	4.26456716022555	3.87436485592879	4.22077281685925	4.36292343061848	4.62865675630526	3.91954258807555	3.95652271070974	4.50036245318076	0.24728936856758	0.592987232293657	0.822436004899168
Merged-chr16-56716235-2	chr16	56716135	56716335	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357126, intron 1 of 8)	B1_Mus2|SINE|Alu	1215.0	NM_001357124	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	3.4912659392809	3.31360917502531	3.43710657161335	3.17295437526778	3.48357694995427	3.49477191082715	3.62681816016969	3.43522908071194	0.569980715543487	0.261354453936196	0.573262724622492
Merged-chr6-83356768-4	chr6	83356650	83356850	+	867.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175277, intron 3 of 3)	intron (NM_175277, intron 3 of 3)	7266.0	NM_175277	78653.0	Mm.391470	NM_175277	ENSMUSG00000045160	Bola3	1810056O20Rik	bolA-like 3 (E. coli)	protein-coding	4.4571663210045	5.11865679242328	4.55017632088108	4.55481417814473	5.01876932535572	4.81220131392253	4.90919069617896	4.79032216457805	0.396453439794908	0.276133255434078	0.588170362047527
Merged-chr18-69663274-4	chr18	69663199	69663399	+	890.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	MIR3|SINE|MIR	-262260.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	4.15240882926715	4.03726410784207	4.29516420074905	4.60337681351858	4.45273208574511	4.17353038555738	4.5538981436334	4.42031045804287	0.233886033279487	0.574689368432677	0.81250997230449
Merged-chr5-124377376-4	chr5	124377290	124377490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081203, intron 30 of 31)	intron (NM_001081203, intron 30 of 31)	-22762.0	NM_013812	13445.0	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	5.87905190546172	5.73019112497728	5.70232492350065	5.99293848011167	6.03292847792264	6.12462869031967	6.1051262991852	6.27786225532829	0.453293921179027	0.0642662657429556	0.269415662248533
Merged-chr15-103307358-4	chr15	103307255	103307455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030720)	TTS (NM_030720)	3083.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	5.7704564872166	5.90087464879044	5.69339443662706	5.49928143465355	6.12999665212701	6.33297411798381	5.69096023470544	6.11760634176928	0.599709620639389	0.0260058779660254	0.152489693363845
Merged-chr16-11034587-4	chr16	11034487	11034687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25689.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	7.46089261938043	7.11045173525256	7.20424767806835	7.2874791428538	6.96606466352969	7.21683174137375	7.1681612719147	7.02208040969022	-0.244924261056056	0.200918107989577	0.503065263001114
Merged-chr7-45389138-3	chr7	45389046	45389246	+	918.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126539, intron 4 of 9)	intron (NR_126539, intron 4 of 9)	6596.0	NM_009224	20637.0	Mm.216386	NM_009224	ENSMUSG00000063511	Snrnp70	2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Srnp70|U1-70|U1-70K	small nuclear ribonucleoprotein 70 (U1)	protein-coding	4.03142213023326	3.78642498850431	4.0779720149448	4.03210579513581	3.78456427195203	4.05671437614343	4.29975314835686	3.88133835275884	0.0765643672782935	0.863283550728861	0.948573763987243
Merged-chr1-165751364-4	chr1	165751260	165751460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12398.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	6.0367697531777	5.88749018877048	5.74775703301007	6.15279860598149	6.25859175813913	6.02954577759067	6.31079333255716	6.35559329063414	0.409877683128056	0.0941685493453295	0.335661433915129
Merged-chr14-105483540-3	chr14	105483443	105483643	+	727.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15245.0	NR_045921	74864.0	Mm.159344	NR_045921	ENSMUSG00000022116	4930449E01Rik	-	RIKEN cDNA 4930449E01 gene	ncRNA	3.51613885966747	3.43946680104334	3.62216253401836	3.57245551730115	3.58329833860412	3.31938900913794	3.65624838063508	3.62007248887455	0.0447692824254143	0.927535829742502	0.973537659073704
Merged-chr14-33248761-4	chr14	33248673	33248873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	31950.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	5.67449295244597	5.54714833148417	5.64947765120074	6.10341300367828	5.7753757150252	5.68761615758422	5.54022846411492	5.77036086428764	-0.141474276787367	0.616884294954951	0.835220406881962
Merged-chr13-113470351-4	chr13	113470287	113470487	+	794.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 3 of 6)	(TC)n|Simple_repeat|Simple_repeat	32457.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	3.37719487044417	3.405824351711	3.73708718534122	3.15062791117318	3.26496137814651	3.76415112114604	3.42191328008987	3.3154264183846	0.087646077037797	0.874252530962467	0.952841261958902
Merged-chr10-81070013-4	chr10	81069913	81070113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022653)	promoter-TSS (NM_022653)	-70.0	NM_022653	50492.0	Mm.26995	NM_022653	ENSMUSG00000004929	Thop1	AI131655|AI327041|EP24.15	thimet oligopeptidase 1	protein-coding	8.66020848430511	8.74805331735096	8.16793160834739	8.35572981825271	8.61009274428851	8.74495210315197	8.45553960358358	8.56617611299607	0.119909301956781	0.512332908663617	0.775801899880177
Merged-chr3-108381504-2	chr3	108381404	108381604	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040560, intron 2 of 2)	intron (NR_040560, intron 2 of 2)	2237.0	NR_040560	100038453.0	Mm.214328	NR_040560	ENSMUSG00000074281	Gm12522	-	predicted gene 12522	ncRNA	3.08672589512879	3.55273228632426	3.3334097490054	3.04924247243896	3.27072193527915	3.50369436888982	3.20445831655146	3.33157567495938	0.229325520109292	0.682700766382509	0.86997749614016
Merged-chr8-92822542-4	chr8	92822460	92822660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4737.0	NM_008610	17390.0	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	6.31920807294541	6.07125339163372	6.50513196882952	6.42051258797694	6.37257584767788	6.25882435212072	6.25142861488633	6.01019663452145	-0.158306012871676	0.503951669159986	0.770592637321386
Merged-chr2-118861556-2	chr2	118861456	118861656	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019826)	promoter-TSS (NM_019826)	-444.0	NM_019826	56357.0	Mm.6635	NM_019826	ENSMUSG00000027332	Ivd	1300016K07Rik|6720455E18Rik|AI463340	isovaleryl coenzyme A dehydrogenase	protein-coding	4.32573027493873	4.21930207548806	4.28385279598678	4.59522673787669	4.32224049955231	4.00279384794932	4.03051344955135	4.19168511203577	-0.556747117143386	0.178523606495767	0.474323694914601
Merged-chr10-78156901-4	chr10	78156792	78156992	+	925.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	12876.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	4.22856358955226	4.41799004197936	4.22919517996242	4.58213520233711	4.31164470726034	3.91474497363399	4.42179490542454	4.31612391304757	-0.307738367384164	0.455463273824728	0.738955495643786
Merged-chr1-43814407-7	chr1	43814317	43814517	+	872.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026430, intron 1 of 14)	intron (NM_026430, intron 1 of 14)	13291.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	4.24783259399348	3.73176052172044	4.53411704955456	3.88900966943765	3.80572200310008	3.76652216664355	3.96436075523433	3.979113355106	-0.669262149914116	0.165188123347162	0.455772085768736
Merged-chr1-134698719-2	chr1	134698619	134698819	+	722.133301	f1_balb.idr|f1_c57bl6.idr	intron (NM_009307, intron 2 of 9)	intron (NM_009307, intron 2 of 9)	-10581.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	2.83771017127168	3.17795525728115	2.97365123999665	2.97031396121925	2.90260513349421	3.08320180704954	3.19587256950437	3.31032303738175	0.529089501278947	0.37089476856224	0.675068605253279
Merged-chr18-46612360-4	chr18	46612258	46612458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14654.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	6.98205272535623	7.21268129151384	6.76734485186839	7.27051134637797	6.95093762300465	6.68525145923325	6.56035607308654	6.74773065194834	-0.465212728396331	0.0347092510095653	0.184425931442957
Merged-chr11-49713593-1	chr11	49713493	49713693	+	680.5	f0_balb.idr	promoter-TSS (NM_212484)	promoter-TSS (NM_212484)	-871.0	NM_212484	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	3.85783713854485	3.43379800848825	3.7187403952559	3.54198321893602	3.48039478893373	3.56125273665164	3.433145396349	3.81119725891216	-0.2009604210229	0.689004623683122	0.873078401014891
Merged-chr8-33673375-4	chr8	33673244	33673444	+	943.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010344, intron 4 of 12)	intron (NM_010344, intron 4 of 12)	20106.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	4.31563725792601	3.73410445252181	4.01337737003267	4.12767722719856	5.84168308931672	5.07132535270731	5.52184008828625	5.33836844546222	2.90235697362645	3.53668022644e-12	3.45318740518207e-10
Merged-chr4-45848226-4	chr4	45848076	45848276	+	881.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028788)	promoter-TSS (NM_028788)	-640.0	NM_001305421	74152.0	Mm.63645	NM_028788	ENSMUSG00000028327	Stra6l	1300002K09Rik|Rbpr2	STRA6-like	protein-coding	3.97748419548546	4.16179538338968	4.39231695806821	3.90729316957797	3.77520271833118	3.88655584585995	3.75126851948935	4.0237330611639	-0.699365351482027	0.122229044517024	0.387413444121253
Merged-chr5-31004384-4	chr5	31004292	31004492	+	905.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35715.0	NM_053085	69852.0	Mm.57874	NM_053085	ENSMUSG00000006642	Tcf23	2010002O16Rik|Out|bHLHa24	transcription factor 23	protein-coding	5.09623509511949	4.93678368190774	4.48034059713941	4.23221909616403	4.73641054522951	4.70431456787771	4.85423506363371	4.84012825419419	0.134550438564095	0.733601959066695	0.894541206455181
Merged-chr7-30332104-4	chr7	30331969	30332169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9694.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	5.34109309680001	5.40305753557902	5.37065056250762	5.14004921217393	5.05290063031427	5.19124190674643	5.5019055811915	5.21691175782955	-0.112785253107507	0.708178320014781	0.882710273980338
Merged-chr2-124626626-4	chr2	124626515	124626715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	16319.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	6.21936793138296	6.24950682772135	6.22046715898936	6.50030511774398	6.58187113074078	6.04112263444238	6.08767839224072	6.17640470805455	-0.0880294072981773	0.725854491343674	0.890921883682774
Merged-chr13-41460086-4	chr13	41459976	41460176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	27284.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	5.88442896961939	6.04584786826232	6.2295234521322	5.97504098053345	5.71185356540505	6.03758266336646	5.70847706376524	5.88127715681704	-0.321927620817927	0.199917635650869	0.50185984431534
Merged-chr12-103348722-4	chr12	103348624	103348824	+	862.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 1 of 9)	intron (NM_023049, intron 1 of 9)	7277.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	4.21821517280827	4.19182010275306	3.9800010229118	3.92974494810745	4.34342648114088	4.2053681862995	4.01469424931148	4.25901090376829	0.359018166935196	0.381532779550169	0.683748469600723
Merged-chr4-155492472-4	chr4	155492387	155492587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160017, intron 1 of 10)	CpG	1126.0	NM_001160016	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	4.98233331602025	5.14447586216519	5.4207329391538	5.05179981264317	5.17314508907321	5.19517583959584	5.28414413164403	5.4428673094498	0.22916321958726	0.44947691084552	0.734617277148016
Merged-chr4-141958357-2	chr4	141958257	141958457	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 9 of 31)	intron (NM_177868, intron 9 of 31)	-24635.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	4.28449667076302	3.80024664030073	3.8309880986292	3.95408642493777	4.59459091146809	4.17803402406861	4.26546680344193	4.51482699117146	1.06600051586572	0.0114696272451988	0.0869987849196511
Merged-chr3-110250181-4	chr3	110250112	110250312	+	980.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024139, exon 1 of 2)	non-coding (NR_024139, exon 1 of 2)	787.0	NM_178891	99890.0	Mm.36115	NM_178891	ENSMUSG00000049300	Prmt6	AW124876|BB233495|Hrmt1l6	protein arginine N-methyltransferase 6	protein-coding	5.08237475992964	5.17787748491283	5.76049068608168	5.73792008848005	5.02972149872964	5.02889238245335	5.45477883275875	5.45180228321944	-0.422496519172728	0.216581827423951	0.523199657023906
Merged-chr3-79181364-4	chr3	79181244	79181444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31575.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	5.12937447892958	5.2656668180385	4.97950577269047	4.93177597074659	5.62109845921742	5.69928841259457	5.87540079647708	5.49546851619657	1.07154620210716	0.000185884106095338	0.00342241199890328
Merged-chr3-81925136-4	chr3	81925050	81925250	+	914.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7451.0	NM_177662	229445.0	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	4.11412899308164	3.82210314163786	3.76638385653136	4.07995111396686	4.24715430007453	3.88610504254941	4.1795990989634	3.76440324847432	0.219981045862927	0.628492356097223	0.841555695467787
Merged-chr3-103102631-4	chr3	103102538	103102738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-24918.0	NM_177857	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	7.263242145844	7.05877102901711	7.26449729596732	7.31719630286358	6.81535174450612	6.73332695834332	7.06498481788507	6.90735344213742	-0.47971985851122	0.0137672730159383	0.0988088116098772
Merged-chr19-12572815-3	chr19	12572726	12572926	+	773.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346545)	promoter-TSS (NM_001346545)	-684.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	3.3213589836959	3.26178318191101	3.55413821576946	2.6607526881109	3.74828642473287	3.72811736432676	3.63992954538248	3.60412962947385	1.48189191026061	0.0179666942834477	0.119018271977806
Merged-chr17-28950961-4	chr17	28950866	28951066	+	861.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1470.0	NM_001356300	66989.0	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	3.90660204070878	4.17182467616715	4.15380666612478	4.40386295096137	4.11303912137888	4.18407569163406	3.99498189793135	3.95813669641361	-0.313228492219939	0.46387817149089	0.745050079395042
Merged-chr12-99641534-4	chr12	99641427	99641627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13553.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	6.31842882843088	5.8739882802063	5.70985421994727	6.15829016986382	6.18714500473344	6.66149179085942	6.46932684471567	6.40154731499363	0.58963177251539	0.0222057964350417	0.137344191540646
Merged-chr7-30169820-4	chr7	30169740	30169940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357557)	promoter-TSS (NM_001357557)	-82.0	NM_001033540	330503.0	Mm.434058	NM_001033540	ENSMUSG00000066647	Gm5113	B430201F14|EG330503	predicted gene 5113	protein-coding	7.2272177367799	7.20904147241176	6.75495643119019	6.96279142865878	7.34062572225947	6.96369642270154	7.30394361429144	7.12365737849793	0.201854000159994	0.33373366684017	0.644520998861314
Merged-chr15-59265787-4	chr15	59265699	59265899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41149.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	5.22938834804123	4.95802323832277	5.53599935015287	5.53571015747817	4.244298710386	4.4924157570012	5.01900323375802	4.86164820410589	-1.30047815714329	0.000701579373021382	0.0101516002539437
Merged-chr6-35539864-4	chr6	35539773	35539973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008098)	promoter-TSS (NM_008098)	15.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	8.44548467378219	8.43328954361386	8.21770680963384	8.51636069222498	8.47469273046858	8.34534770083068	8.87035888278753	8.52523958381061	0.198533721127608	0.26043391686782	0.572268147713191
Merged-chr6-137735080-4	chr6	137734973	137735173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011499)	promoter-TSS (NM_011499)	-9.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	8.32889381694186	8.44378363370881	8.62310502111436	8.604112456031	8.87211670189627	9.01922607290292	8.93904944352589	8.74374403072032	0.48477616665346	0.00195280544495463	0.0230016115780945
Merged-chr9-108068048-3	chr9	108067961	108068161	+	869.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311152, intron 15 of 38)	intron (NM_001311152, intron 15 of 38)	11240.0	NM_001311152	84585.0	Mm.379272	NM_032543	ENSMUSG00000041528	Rnf123	BC003945|Kpc1	ring finger protein 123	protein-coding	3.83090096956058	3.72053104845837	3.62953928782544	3.67312295483516	3.76435731615105	3.63028735944662	3.61560701687887	3.7324803715762	-0.0649227231743918	0.887968055470383	0.957980481384822
Merged-chr9-110871190-3	chr9	110871054	110871254	+	810.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146260, intron 3 of 5)	intron (NM_146260, intron 3 of 5)	8929.0	NM_146260	20776.0	Mm.390229	NM_146260	ENSMUSG00000049555	Tmie	5131400L21Rik|Mm.87012|sr	transmembrane inner ear	protein-coding	3.29233196676692	3.69130729358571	3.46190153638062	3.42766712718126	3.42818996105912	3.20804004125727	3.33925412724432	3.29111742161203	-0.534055893918491	0.315105161117417	0.62702878136683
Merged-chr6-51470959-4	chr6	51470782	51470982	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182650)	promoter-TSS (NM_182650)	266.0	NM_007624	12417.0	Mm.280968	NM_007624	ENSMUSG00000029836	Cbx3	HP1g|M32	chromobox 3	protein-coding	4.43073702214311	4.54659396377992	4.4767201488654	4.94449302584577	4.70876876870869	4.65201604885612	4.50018130830194	4.88804458840687	0.116554051536891	0.758461419874801	0.905140871206707
Merged-chr9-7836411-1	chr9	7836311	7836511	+	621.0	f0_balb.idr	intron (NM_007465, intron 1 of 7)	intron (NM_007465, intron 1 of 7)	395.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	4.17221639301985	3.88177399976541	4.08955929262316	3.76977245237576	4.05957733307954	3.80197461868729	3.93520122583157	3.84888574800778	-0.146826324170066	0.743307034983594	0.89893726116449
Merged-chr5-23978752-3	chr5	23978656	23978856	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053090, intron 10 of 10)	intron (NM_053090, intron 10 of 10)	51556.0	NM_001310471	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	5.59211494328111	5.5002924878405	5.74590091677707	6.27252582950745	4.37515606121208	4.33814565785312	4.47006452955169	4.25831613515652	-2.95854921341498	2.67595650156984e-14	3.91112747074414e-12
Merged-chr11-23771200-5	chr11	23771051	23771251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009044)	promoter-TSS (NM_009044)	-181.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	7.99714197612854	8.64150672960939	8.64747520805687	8.20081016814117	8.35034263876412	8.61573237428158	8.29304281255266	8.36462330574982	0.0129134329719435	0.948475963606822	0.981468586232336
Merged-chr17-17884991-4	chr17	17884904	17885104	+	997.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1065.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	5.52133615604007	6.03073500907603	5.23580316148895	4.86856443871917	5.93334901484846	6.34930853140115	5.75031238617552	5.23218193973608	0.644209328213634	0.0937193829877302	0.334865316082709
Merged-chr5-5359467-3	chr5	5359371	5359571	+	984.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	B3A|SINE|B2	20780.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	4.56473959426666	4.57386881754294	4.60157921705716	4.72297554052765	3.71684609099831	4.40904226852804	4.1167119757172	3.78509663680528	-1.48944153383681	0.000701151363386627	0.0101516002539437
Merged-chr11-106159461-4	chr11	106159321	106159521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001356459, exon 2 of 5)	5' UTR (NM_001356459, exon 2 of 5)	506.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	5.7356116071408	5.595990201622	5.76084529650865	5.04743154405378	5.6833264979071	6.17310201117168	5.6322596572298	5.84912463286189	0.499724181529582	0.108292348681667	0.363192408916317
Merged-chr1-186584051-4	chr1	186583941	186584141	+	935.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25360.0	NR_131158	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	4.7111268696009	4.39719923223916	4.78605245027012	5.04395433966824	4.34960852823653	4.44344274167769	5.02007473920272	4.81830207992322	-0.176359175563756	0.659720889835149	0.858504937170606
Merged-chr4-155761141-4	chr4	155761026	155761226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_179203)	promoter-TSS (NM_179203)	-28.0	NM_179203	108888.0	Mm.241152	NM_179203	ENSMUSG00000029036	Atad3a	2400004H09Rik|Atad3|Tob3|mKIAA1273	ATPase family, AAA domain containing 3A	protein-coding	8.15053477696175	8.0411346622915	7.73215562702923	7.6290448243117	7.9778050550157	7.74332153818768	7.82621731351228	7.84403935771786	-0.0580263211423832	0.760825743202826	0.906387085349031
Merged-chr9-5274542-4	chr9	5274446	5274646	+	830.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-23971.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	3.35242900747166	3.42977859600018	3.9188771056695	3.6606321389591	4.25387351774391	3.94520294330764	3.6513653842638	3.82122680404819	0.964370961110313	0.0592408672699181	0.256490613832452
Merged-chr7-100494721-4	chr7	100494640	100494840	+	990.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011671, intron 2 of 7)	intron (NM_011671, intron 2 of 7)	1382.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	5.48287097227572	5.31866540535991	5.34949378783483	5.29472194952713	4.90432224814245	5.16908824783993	4.96767760226441	5.37376760794942	-0.464033484246482	0.128483413679351	0.39883649813705
Merged-chr8-94601842-4	chr8	94601749	94601949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026274)	promoter-TSS (NM_026274)	-92.0	NM_001359093	67610.0	Mm.109074	NM_026274	ENSMUSG00000050079	Rspry1	4930470D19Rik|AI608258	ring finger and SPRY domain containing 1	protein-coding	9.04370753799584	9.23556812190701	9.18318535547863	9.20391773243694	9.07395908797759	9.22641784348484	9.10831913256064	9.13964223290872	-0.0417595233523694	0.762694052279156	0.907011913026374
Merged-chr15-96660924-6	chr15	96660782	96660982	+	949.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-17969.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	4.37908909442274	4.38838065156555	4.29829585295395	4.35064742746108	3.9304457252035	4.19278338954521	4.05136378101707	4.01465366402551	-0.799090638471708	0.0464884741481317	0.221560301398719
Merged-chr5-117931624-2	chr5	117931524	117931724	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 19 of 27)	intron (NM_008712, intron 19 of 27)	-45146.0	NM_145564	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	2.27668315432511	2.36770090450949	2.49790883567147	2.54958553864343	2.65552134757246	2.66880820906916	2.67671134110875	2.68580929766965	1.22452621176236	0.0848864988401094	0.31700943266553
Merged-chr12-3344919-4	chr12	3344818	3345018	+	994.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20214.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	5.66291504239884	6.42358804187566	5.60668684712949	5.76345487530511	6.21194379080019	6.28312823208529	6.18961224286306	5.51201966168202	0.272541072499645	0.392304709827982	0.691858576902415
Merged-chr6-98575461-4	chr6	98575371	98575571	+	940.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-232717.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	4.60734773242678	4.51604014392171	4.17640175601014	4.38056599568205	4.97381301142144	4.61215291319966	4.73912110320294	5.21027272057176	1.0196098466917	0.00564787997960569	0.0519997993879645
Merged-chr2-75802108-4	chr2	75802010	75802210	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30067.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	5.05538573550223	4.88315700843616	4.88950939334243	5.12678022322115	4.69334583973885	4.70043318576423	4.8303249676438	4.92135637526803	-0.438564296319092	0.180082842003895	0.476417502756723
Merged-chr17-49436716-3	chr17	49436634	49436834	+	751.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020042, intron 3 of 10)	intron (NM_020042, intron 3 of 10)	8370.0	NM_020042	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	3.28781355176851	3.41848644698732	3.45613758286104	3.54806770077865	3.30581993941103	3.13355621769302	3.5877024213234	3.3449013652252	-0.296492964994746	0.580045633587346	0.81556313513578
Merged-chr6-99655799-6	chr6	99655720	99655920	+	979.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025829, intron 1 of 6)	ORR1E|LTR|ERVL-MaLR	10951.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	4.57039460135046	4.66802993735398	5.24636106612311	5.07056740524894	4.91339953147597	4.65894302065861	4.86205773259051	4.52304788425862	-0.343978064957324	0.355158027888182	0.661792017253146
Merged-chr5-76589004-1	chr5	76588904	76589104	+	1000.0	f0_c57.idr	Intergenic	CpG	-2710.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	5.63787987555834	5.21744158737	5.52870381718927	5.69529184935692	5.72155755502036	6.05156695457817	5.89097482887576	5.80710199657337	0.536030033585918	0.0511164828382451	0.234638017733481
Merged-chr3-54013312-3	chr3	54013204	54013404	+	573.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-142753.0	NM_001253683	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	3.07707194395061	2.98816626397018	3.07740581641495	3.12707328474457	3.51102441512793	3.32024130396315	3.60801879043662	3.53052716129742	1.5340819175776	0.00448426969361118	0.0438381860350982
Merged-chr15-76477357-4	chr15	76477262	76477462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331154)	promoter-TSS (NM_001331154)	0.0	NM_001331153	15499.0	Mm.347444	NM_008296	ENSMUSG00000022556	Hsf1	AA960185|HSTF|HSTF 1|Hsf1alpha|Hsf1beta	heat shock factor 1	protein-coding	7.87199557193836	7.94681050368753	7.73517576363868	7.45197535822419	7.94233895730126	8.12819382291141	7.94610994325257	7.48917038709851	0.180916218568429	0.382640550943023	0.684637549504146
Merged-chr4-151862594-4	chr4	151862495	151862695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195565)	promoter-TSS (NM_001195565)	-827.0	NM_001195565	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	8.84246109011239	8.85527127153034	8.69438597008325	8.813681070579	8.97571017668868	8.98992202947802	8.85387895750262	8.736394972508	0.11274958123071	0.442636846643747	0.729357249023888
Merged-chr3-144570820-2	chr3	144570720	144570920	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011828)	promoter-TSS (NM_011828)	393.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	5.85629288303671	5.77065923701046	6.44573214702314	5.72986708034832	5.91271533691221	6.08103449958951	5.85131431156095	6.22715131449845	0.080104975046702	0.776872289782054	0.913015118902433
Merged-chr7-126474572-2	chr7	126474472	126474672	+	908.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289540, intron 1 of 10)	intron (NM_001289540, intron 1 of 10)	558.0	NM_001289538	20399.0	Mm.8538	NM_011363	ENSMUSG00000030733	Sh2b1	AI425885|C530001K22Rik|Irip|Psm|SH2-B|SH2-Bb|Sh2bpsm1|mKIAA1299	SH2B adaptor protein 1	protein-coding	2.99818195114646	2.78715478317265	2.66626088456452	2.96204068830462	2.84791234929205	3.04759133011243	2.92792779146963	3.21210352695869	0.62682404212521	0.314975408019675	0.62692974378324
Merged-chr3-146150028-8	chr3	146149925	146150125	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005846)	promoter-TSS (NM_001005846)	-149.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	4.77505096772966	4.83353313157345	5.2986632891805	4.69122093217248	5.01525402848054	5.13732556069961	4.67098259871157	5.26791806030085	0.25508687645883	0.472789908005502	0.75083469816983
Merged-chr13-37777585-4	chr13	37777487	37777687	+	816.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48451.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.6290468701757	3.34626734885349	3.81958015965735	3.40423951899672	3.58983176982521	3.32325121811808	3.56279431391542	3.72587336241771	0.0206939383235586	0.968055094667494	0.98865348920078
Merged-chr11-54965398-4	chr11	54965307	54965507	+	973.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-2467.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	5.36583034600884	5.35690035671581	5.04397874173621	4.85191876851688	5.458617971045	5.64823524700636	5.57158056693609	4.84334069633608	0.459633810803409	0.179601377244767	0.475824186021704
Merged-chr5-147435537-1	chr5	147435437	147435637	+	639.5	f0_balb.idr	intron (NM_028291, intron 1 of 18)	intron (NM_028291, intron 1 of 18)	5381.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	3.02357336679809	3.36482932438742	3.24892970704358	3.14166612465222	2.77398686712405	3.003348750458	3.01315377134112	2.75131539372169	-1.36884920366989	0.0292735022977431	0.164575717829625
Merged-chr15-37305550-4	chr15	37305450	37305650	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026496, intron 7 of 15)	intron (NM_026496, intron 7 of 15)	-72391.0	NR_155442	105245924.0	Mm.391911	NR_155441	ENSMUSG00000089804	Gm16136	-	predicted gene 16136	ncRNA	5.62087583792355	5.54219472809335	5.81703657753981	5.96301324837994	5.85640288210254	5.3310308259617	5.91522056308003	5.18282028072195	-0.222776078117846	0.475558495973031	0.752367766550296
Merged-chr8-68362418-1	chr8	68362318	68362518	+	545.0	f0_balb.idr	intron (NM_172753, intron 8 of 9)	intron (NM_172753, intron 8 of 9)	-6041.0	NR_038189	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	2.51569964589952	2.42547284173989	2.57100047698882	2.65112876594559	2.04285505072903	2.13286178278497	2.25846935213059	2.19248083450804	-3.31634181728289	0.00120449741344385	0.0156108742519155
Merged-chr9-124312650-4	chr9	124312544	124312744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243117)	promoter-TSS (NM_001243117)	50.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	7.2570471556651	7.52838929257401	7.12149749976601	7.4482964778812	7.28419497589243	7.34597207509516	7.36430471972871	7.0293062099058	-0.12635456594961	0.518507997820384	0.779547160714285
Merged-chr6-31412698-4	chr6	31412590	31412790	+	988.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 1 of 17)	B3|SINE|B2	13862.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	4.82957845920073	4.5502397752183	4.9658424512256	4.88773973562538	4.75716836902905	4.49186598751205	4.87620655582994	4.86236277037851	-0.127058307051743	0.7143756319183	0.885790916272019
Merged-chr7-55957377-4	chr7	55957294	55957494	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023647, intron 1 of 6)	intron (NM_023647, intron 1 of 6)	5099.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	5.59756092767909	5.7401147428272	4.97902784254831	5.15492997666353	5.74436743991639	5.4077531172874	5.1388489851217	5.19451605611067	0.00772947001111832	0.982112054889247	0.993573193675204
Merged-chr12-3906634-3	chr12	3906552	3906752	+	916.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 16 of 17)	intron (NM_153743, intron 16 of 17)	14908.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	3.5989305092285	3.62893113093762	4.13507252056591	4.26954209842963	3.64967105199848	3.58976404305398	3.80500314468332	3.91648848076996	-0.598119338927342	0.241187672795382	0.551778914341352
Merged-chr7-143822958-4	chr7	143822842	143823042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007856)	promoter-TSS (NM_007856)	-90.0	NM_030221	78914.0	Mm.35104	NM_030221	ENSMUSG00000031090	Nadsyn1	9130012B15Rik	NAD synthetase 1	protein-coding	8.67047356162403	8.89999497999882	8.86428436077388	8.53525745019149	8.75008225954666	8.9187396167318	8.72183459186973	8.53085661673783	-0.0121690613314615	0.942189938181084	0.979062797089676
Merged-chr4-132798122-4	chr4	132798036	132798236	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1772.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	5.50968867615544	5.36619990997931	5.3765500297079	5.17851674779839	5.2362527120859	5.432034307819	4.99547498177058	5.22283984190153	-0.22112058743755	0.460234107501442	0.742490742225721
Merged-chr17-53594835-4	chr17	53594764	53594964	+	893.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190846, intron 1 of 17)	C-rich|Low_complexity|Low_complexity	10738.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	5.3728376457596	4.9991096876291	5.03629322307065	5.34245956499742	4.72100597150446	4.66241879025326	4.55444204853893	4.57202643219668	-1.1577184500857	0.000643280205070962	0.00943111054927827
Merged-chr7-81304301-4	chr7	81304200	81304400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 8 of 21)	intron (NM_008803, intron 8 of 21)	40934.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	5.38002053742546	5.10426891795846	5.38094481665192	6.17664923665231	5.56328474282957	5.42985187674154	5.8135913108992	5.62934874292744	0.0195008090815628	0.955899700790603	0.984332057384291
Merged-chr6-127338589-4	chr6	127338491	127338691	+	842.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30624.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	3.90031430927813	3.61174068713904	3.63119800284197	4.1609510415163	4.25078153385922	3.68709123380632	4.02099430232086	3.68781943796029	0.229437150203874	0.653112824379218	0.854981658663093
Merged-chr9-20980002-4	chr9	20979899	20980099	+	943.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3206.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	4.97560382618806	4.66009330807139	4.47119060619175	5.07162757992874	4.9525749746332	4.73984762760074	4.70717235839816	4.80173025963855	-0.0480074066917417	0.894057117452745	0.960481560907683
Merged-chr15-3583448-4	chr15	3583326	3583526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010284)	promoter-TSS (NM_010284)	-74.0	NM_010284	14600.0	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	5.4190388627948	5.2175632162898	5.54865043398204	5.34520364415601	4.93712510116411	5.22109541556568	5.28018853697324	5.14531544377395	-0.441622383785524	0.139727693883751	0.415685591824798
Merged-chr1-156014113-4	chr1	156014038	156014238	+	793.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160018, intron 8 of 9)	intron (NM_001160018, intron 8 of 9)	20679.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	3.43339247314698	3.88221370710085	3.36585562235411	3.8105400127915	4.20689901932787	3.61523859577016	3.81597436628384	4.01219524744817	0.815076289419537	0.12043387592493	0.38416970755851
Merged-chr1-55665323-4	chr1	55665204	55665404	+	690.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	259358.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	3.6508857213312	3.46878548468789	3.42001265962576	3.884364149987	3.51329144132453	3.53493428139223	3.87450795002755	3.88969899086531	0.241064248126755	0.64009447521221	0.847935767347761
Merged-chr10-81268198-4	chr10	81268076	81268276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018758)	promoter-TSS (NM_018758)	4.0	NM_018758	57267.0	Mm.293931	NM_018758	ENSMUSG00000004931	Apba3	AW208791|Mint-3|X11gamma|lin-10|mint3	amyloid beta (A4) precursor protein-binding, family A, member 3	protein-coding	5.55552373437781	5.99893205271269	5.67307172595796	5.87161332524894	6.21833401884686	5.98246620472421	6.33216257068889	6.1879568167177	0.613489704170012	0.0149436314808045	0.104537861933384
Merged-chr4-117887367-4	chr4	117887243	117887443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033617)	promoter-TSS (NM_033617)	-14.0	NM_033617	114143.0	Mm.207052	NM_033617	ENSMUSG00000033379	Atp6v0b	2310024H13Rik|Atp6f|VMA16	ATPase, H+ transporting, lysosomal V0 subunit B	protein-coding	7.09262145500541	6.92168973584124	6.29917459682147	6.84328283223371	7.25997759617635	7.33956960265246	7.43993803715379	7.3631025903797	0.721004897865304	0.00107182777735627	0.0142199571420621
Merged-chr13-54468855-4	chr13	54468768	54468968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028597)	promoter-TSS (NM_028597)	-28.0	NM_028597	73666.0	Mm.292487	NM_028597	ENSMUSG00000025872	Thoc3	2410044K02Rik|AL033344	THO complex 3	protein-coding	6.79449468579797	6.63928570584005	6.0226063865908	6.79469026825372	7.048788050501	7.08021026026947	6.86879166958053	7.15557042357562	0.606360079755267	0.0115472294986888	0.0874383243071454
Merged-chr16-15887255-4	chr16	15887168	15887368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007679)	promoter-TSS (NM_007679)	-18.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	7.17007649223728	7.21184422792749	7.34435518068619	7.36381574957456	7.09445793765947	7.34853449712096	7.5030908395103	7.41751025033292	0.0846988925850192	0.656498413454397	0.856674629405306
Merged-chr6-83450856-4	chr6	83450748	83450948	+	892.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 2 of 11)	intron (NM_001347313, intron 2 of 11)	5544.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	4.50498821332758	4.27673755072366	4.50571220796671	4.34517742683883	4.7025291471909	4.27125152191364	4.40452869205895	4.24260288525307	0.0649000208100812	0.86747571870469	0.950331199983684
Merged-chr8-70042788-4	chr8	70042687	70042887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167939)	promoter-TSS (NM_001167939)	-26.0	NM_027481	70616.0	Mm.17665	NM_027481	ENSMUSG00000011306	Sugp1	5730496N02Rik|Sf4	SURP and G patch domain containing 1	protein-coding	6.73243851577894	6.75679271895819	6.37630054590231	6.40256401542715	6.82863795800386	6.64362794580961	6.48493215663751	6.59475724883187	0.114761968721671	0.60944209041426	0.831008573659444
Merged-chr9-98986340-4	chr9	98986258	98986458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122851)	promoter-TSS (NM_001122851)	-15.0	NM_011810	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	8.95884193328857	8.95888141502827	8.95301067870908	8.88105105977456	8.82779224169509	9.00539694812236	8.82327816733393	8.80592991166458	-0.0871680493733215	0.535680366552077	0.789809240803911
Merged-chr8-104395693-5	chr8	104395513	104395713	+	931.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153582, exon 1 of 4)	exon (NM_153582, exon 1 of 4)	194.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	4.2693539936552	4.21794418298094	4.63299879948422	4.20721934749819	4.41206509806536	4.53234403770681	4.4237606601773	4.2673961934255	0.186371020017245	0.630221086461021	0.842667104605937
Merged-chr9-106887234-4	chr9	106887146	106887346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175402)	promoter-TSS (NM_175402)	-246.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	8.32448777898946	8.49940992888778	7.90257682188331	8.12378325201266	8.32876078597203	8.45365247599429	8.31897888788599	8.12667398964953	0.102401597083534	0.581526207937833	0.816369616347063
Merged-chr8-22806637-4	chr8	22806539	22806739	+	951.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122820)	promoter-TSS (NM_001122820)	-985.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	4.27584695223234	4.01637260794748	4.22876485791375	4.18362371330832	4.65917908062839	4.62304046837504	4.43094578358844	4.63803623823002	0.967943844716194	0.00916015422297753	0.0741005361333467
Merged-chr16-17234149-4	chr16	17234050	17234250	+	925.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178922, intron 1 of 2)	intron (NM_178922, intron 1 of 2)	563.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	4.32209694722668	4.27338043647247	4.99108125403522	4.14672915866894	4.69457492474365	4.63708285662899	4.44090008963468	4.83474515031029	0.42888142012295	0.300610885327206	0.612505973963948
Merged-chr16-17276302-4	chr16	17276208	17276408	+	973.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177473)	promoter-TSS (NM_177473)	8.0	NM_177473	224019.0	Mm.246388	NM_177473	ENSMUSG00000055692	Tmem191c	4933405M22Rik|D16Bwg1494e|MNCb-4137	transmembrane protein 191C	protein-coding	5.77845190638049	5.79915380634686	5.60410334747932	5.71844124602404	5.80196873568178	5.22470284211231	5.83969671706648	5.62672977755159	-0.119497213690187	0.667190931189313	0.862274690130043
Merged-chr17-47766805-4	chr17	47766705	47766905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-18939.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	6.53895707195198	6.66255426072273	6.31369741424596	6.44416022487467	6.55874695215636	6.50886907252476	6.39037331414978	6.34666909812551	-0.0545021007529053	0.802097574548491	0.923727929039865
Merged-chr4-15945385-4	chr4	15945258	15945458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026172, exon 1 of 10)	5' UTR (NM_026172, exon 1 of 10)	149.0	NM_026172	67460.0	Mm.393293	NM_026172	ENSMUSG00000028223	Decr1	1200012F07Rik|Decr|Nadph	2,4-dienoyl CoA reductase 1, mitochondrial	protein-coding	6.43185286399894	6.3908699211333	6.60840984652421	6.88680410300076	6.11692347387879	6.25837202915811	6.52934970863052	5.95721685300698	-0.561301598410873	0.0259699261333209	0.15235418876153
Merged-chr3-69223129-4	chr3	69223006	69223206	+	989.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027843, exon 1 of 1)	3' UTR (NM_027843, exon 1 of 1)	687.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	5.16605875816858	5.54560709702881	5.35785294161892	5.39096770109806	5.50130119452502	5.58873445536133	5.24007960891526	5.19724722036558	0.0337328667753263	0.90827326667478	0.966035007914717
Merged-chr8-71382088-4	chr8	71381980	71382180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010150)	promoter-TSS (NM_010150)	-128.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	6.8474206889676	6.67647342967874	6.38745239519385	6.10933054768957	6.73827470112151	6.81519242975005	6.85160146303295	6.22508441653899	0.227795680827356	0.390583470301801	0.69058015678842
Merged-chr18-57085771-4	chr18	57085621	57085821	+	948.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47369.0	NM_001001979	70417.0	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding	4.76139024687621	4.99957574985612	5.13306037394619	5.34449990278792	4.75830156592285	4.85802061592245	4.61793082956979	4.40177449209783	-0.853329976843507	0.0174861158491038	0.116857031266863
Merged-chr1-171646623-4	chr1	171646515	171646715	+	900.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347184, intron 1 of 5)	intron (NM_001347184, intron 1 of 5)	2384.0	NM_001347184	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	4.10124984478056	3.8825640925977	4.16239297055913	3.90244009961102	5.27016307453127	4.95760330470698	5.43756577240308	5.64742040831615	2.85689478134743	2.58371423452282e-14	3.80758168735196e-12
Merged-chr15-78878360-3	chr15	78878253	78878453	+	946.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145929, intron 1 of 16)	intron (NM_145929, intron 1 of 16)	1163.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	3.4364835315716	3.47392458002707	3.49744001417989	3.16188249327576	3.95295657607664	3.88623791540925	3.42434377288593	3.9413275339942	1.37884432824579	0.00641530110663637	0.0570223173662925
Merged-chr8-46818332-4	chr8	46818221	46818421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 5 of 7)	intron (NR_152560, intron 5 of 7)	78576.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	6.21143519561925	6.18025223387513	6.13318759362724	6.32880162028969	6.1567795873347	5.96135958336029	6.08143513196899	6.41886990671708	-0.0867133749923295	0.713441056235978	0.885367451955658
Merged-chr14-75130429-4	chr14	75130397	75130597	+	982.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001247984)	promoter-TSS (NM_001247984)	386.0	NM_027581	70859.0	Mm.320289	NM_027581	ENSMUSG00000021997	Lrrc63	4921509B22Rik	leucine rich repeat containing 63	protein-coding	5.14786388158021	5.31942828445977	4.71019041801281	4.25155867407178	5.35638443517559	5.46644832430426	4.81134869807807	4.94456419340522	0.489373385924151	0.234553680749918	0.544447848974703
Merged-chr18-9841278-3	chr18	9841168	9841368	+	876.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 3 of 9)	intron (NM_130449, intron 3 of 9)	-116912.0	NM_153552	225160.0	Mm.219648	NM_153552	ENSMUSG00000024287	Thoc1	3110002N20Rik|AW107452|NMP-84	THO complex 1	protein-coding	4.1635826104275	3.93743923656282	4.04270521567968	4.57952212186146	3.2109783943325	3.20886654476092	3.38407193922655	3.32346929059541	-3.30620104739529	8.83634584294256e-08	3.81883582729088e-06
Merged-chr11-95824335-4	chr11	95824236	95824436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153104)	promoter-TSS (NM_153104)	-164.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	7.89933524017733	8.30848614319857	8.05071299435809	7.76538653305866	7.75167735082193	8.02643728499419	7.6155813111261	8.01937133509018	-0.201836669694595	0.309067572208275	0.621461643611762
Merged-chr15-101160150-4	chr15	101160008	101160208	+	824.1875	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13964.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	2.61623167636588	2.47573742369953	2.54366468276629	2.30143927642938	2.74129474385347	2.98707228666667	2.86206970771968	3.03684386612313	2.24056967717505	0.000954416262939589	0.0129670538613814
Merged-chr11-84818837-4	chr11	84818731	84818931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145433, intron 1 of 4)	CpG	684.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	6.56483304053429	6.54862316629227	6.46766989148892	6.3059832869331	6.64310809843242	6.51914420622158	6.27190986735792	6.68136534095071	0.113495966593286	0.60981330355438	0.83129179610643
Merged-chr3-19201509-4	chr3	19201410	19201610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 2 of 7)	RSINE1|SINE|B4	13215.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	7.95026239775175	8.09750652274656	7.95858739276832	8.19825988573315	7.87212431048968	7.98786431848261	8.09565657050823	7.79763994926394	-0.156882201932166	0.352559917118167	0.659646200606769
Merged-chr12-119207435-6	chr12	119207313	119207513	+	921.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177290, intron 2 of 13)	intron (NM_177290, intron 2 of 13)	30863.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	3.48269371720696	3.93954105328836	3.81750022148234	3.45796263252697	3.86856796687821	3.88749805135898	3.70022396396298	3.81522228753017	0.410313893002115	0.392982976155173	0.692234134852143
Merged-chr3-98014069-2	chr3	98013969	98014169	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	531.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	4.59547363321156	4.70218563581135	4.71529755765798	4.63352764809793	4.79121740514599	4.68606864782762	4.5752562936242	4.92107828515313	0.194554702290125	0.566042268594924	0.807783748011785
Merged-chr14-26442806-4	chr14	26442636	26442836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347494, intron 10 of 19)	intron (NM_001347494, intron 10 of 19)	85189.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	5.15034906361398	5.46773466305665	5.01314849915282	5.30122566336804	5.03826810162585	5.22474761306935	5.36204433809454	5.04569043730429	-0.154342484813165	0.617470567705242	0.835585040375129
Merged-chr14-47504736-3	chr14	47504672	47504872	+	736.6555179999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146085, intron 2 of 3)	intron (NM_001146085, intron 2 of 3)	32211.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	2.81704363272671	3.06605009161307	2.89589485218436	3.01552517010802	3.50903891082277	3.40875115088415	3.5802065567759	3.59493324931	2.10401280968524	0.000372753707420732	0.00606035544552313
Merged-chr19-56391894-2	chr19	56391794	56391994	+	987.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1856.0	NM_001286552	18175.0	Mm.386769	NM_008733	ENSMUSG00000049134	Nrap	-	nebulin-related anchoring protein	protein-coding	3.55818955854407	3.54163176113888	3.45608497979526	3.24694022971355	3.42256223854571	2.96804892468039	3.59109456628912	3.28326797135934	-0.391033292253103	0.496431144538708	0.766396400406037
Merged-chr17-87975646-3	chr17	87975572	87975772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_010830, intron 1 of 9)	CpG	622.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	4.80781507150046	4.2205686115103	4.24491009669201	4.61928787624655	4.86076133128714	4.75366174047348	5.0647523440706	4.80535920435745	0.786465310131507	0.0355553527458294	0.187202785198268
Merged-chr4-143212660-4	chr4	143212541	143212741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081355)	promoter-TSS (NM_001081355)	68.0	NM_001081355	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	5.45743296693324	5.83512278080335	5.88157740122986	5.94324171272076	5.77528789655839	5.8889774827126	5.73459861823843	5.96417985464636	0.0561792855928933	0.830593172023883	0.93499882818844
Merged-chr3-30592528-4	chr3	30592465	30592665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7305.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	5.64375249063348	5.4223470396946	5.16418696110014	5.3505981772817	5.39638707188753	5.40685156878982	5.06915657179005	5.49134494104292	-0.0905316757494342	0.760478600213993	0.906130030835837
Merged-chr19-10023385-4	chr19	10023251	10023451	+	925.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153790, intron 1 of 10)	intron (NR_153790, intron 1 of 10)	5157.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	3.83523802328211	3.85733407334758	3.8851448725108	3.82689042966296	3.92967590091788	3.73389129707754	3.7694032569676	3.93023863658904	-0.00127864534282472	0.997672557548253	0.999032258328017
Merged-chr11-113544441-3	chr11	113544316	113544516	+	788.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 3 of 9)	intron (NM_027216, intron 3 of 9)	21399.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	3.56723526292346	3.48818092592309	3.90540747456723	3.86206119831752	3.51700379579592	3.62705713665612	3.31534579028708	3.6197858956065	-0.634423488314099	0.211944525558828	0.516749996052334
Merged-chr13-89739642-4	chr13	89739528	89739728	+	994.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081249, intron 1 of 14)	CpG	2884.0	NM_001081249	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	5.26268256751567	5.18085357072293	5.58358865047756	5.21817972686616	5.22908596910315	5.17144835627472	4.93250534148629	5.31922144885828	-0.255770471065857	0.404053219765963	0.70122651118451
Merged-chr4-122898521-4	chr4	122898412	122898612	+	947.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12436.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	4.92220620263147	4.81204608083845	4.25625114488613	4.17583997801057	4.88874551356639	4.99356939463166	4.72622108785396	4.78254829856851	0.590870275031891	0.13365244090781	0.407028851897612
Merged-chr3-109051922-4	chr3	109051832	109052032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24325.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	5.58108790801086	6.00739452768514	6.20991706279863	5.80049850350079	5.63527504319406	5.54884138400824	5.55401704546987	5.68562159487495	-0.50456336805135	0.0657849599734963	0.273064361205592
Merged-chr1-71100332-4	chr1	71100148	71100348	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007525, intron 1 of 10)	intron (NM_007525, intron 1 of 10)	2724.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	3.75509354863863	3.79053522556167	3.80747998864069	3.73831221961195	3.69695264953386	3.64162271065356	3.88835081889914	4.1183096658839	0.221817909349177	0.627959235096041	0.841380739306172
Merged-chr9-95559462-4	chr9	95559361	95559561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198414)	promoter-TSS (NM_198414)	-356.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	5.2900984763375	5.18542219920016	5.70961526814599	5.4807232189914	5.45844154800509	5.19444658085127	5.10083659366083	5.46092568494829	-0.198528958234328	0.514587497572329	0.777136383820736
Merged-chr2-29664276-4	chr2	29664165	29664365	+	866.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	44545.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	4.61299954171461	4.57521420663473	4.49287381367695	4.0791395960555	4.42823835933561	4.7077214875987	4.42971305114801	4.85427561388132	0.385779353221785	0.328907461037913	0.640144325858488
Merged-chr6-86666004-4	chr6	86665889	86666089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010751, intron 2 of 5)	intron (NM_010751, intron 2 of 5)	3170.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	5.9918573666481	5.9161650870107	5.97107247755287	6.13591017012653	5.84564439389832	5.64494545828086	6.12364420895562	6.20653242690902	-0.0663840619332532	0.79623385539501	0.921052599307061
Merged-chr5-108082553-1	chr5	108082453	108082653	+	694.400024	f0_c57.idr	intron (NM_001253879, intron 3 of 14)	B2_Mm2|SINE|B2	4388.0	NM_001253878	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	3.52458273072337	3.60536637866034	3.32584452305865	3.35656025455168	3.90464283883361	4.20009075163475	3.88227328610906	3.98719490634214	1.63067804423751	0.000494456867017875	0.00764941215767558
Merged-chr12-40522658-4	chr12	40522571	40522771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	76618.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	6.16412555164991	6.38807285802171	6.20432304977142	6.42497323777908	6.17665390367673	5.97806588180784	5.94208061376057	6.01361880376298	-0.418063099197865	0.0744827985983002	0.294158082529457
Merged-chr9-37489867-4	chr9	37489775	37489975	+	882.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146222, intron 1 of 3)	CpG	554.0	NM_146222	235184.0	Mm.127892	NM_146222	ENSMUSG00000042138	Msantd2	2810450G17Rik|9530092B10Rik	Myb/SANT-like DNA-binding domain containing 2	protein-coding	3.89156103662815	4.21623829367533	4.52289971561548	4.39298577305482	4.32551742791447	4.5741220247429	4.29538095084086	4.73117331494409	0.480788084449162	0.24716447396643	0.558168726560377
Merged-chr9-106289060-3	chr9	106288957	106289157	+	812.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 6 of 10)	intron (NM_027354, intron 6 of 10)	7996.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	3.59188884646435	3.45536483346616	3.37036866470651	3.31846791137345	3.60809088794507	3.48425689654531	3.62681938897836	3.53838513097596	0.462152663339681	0.345866128105864	0.654200694454941
Merged-chr2-168010102-4	chr2	168009998	168010198	+	907.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 1 of 21)	intron (NM_001080708, intron 1 of 21)	495.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	4.36882284827379	4.63693490085159	3.87952804700844	4.3577871475603	4.11827032496187	4.17124627531564	4.30837082701127	4.14490210678419	-0.385421732472509	0.365306376837279	0.670036077799093
Merged-chr11-117320143-4	chr11	117320050	117320250	+	951.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-11565.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	5.61066070387268	4.72957600089256	4.82955158234281	5.57840063475416	5.12966121962616	4.74155984737498	5.25369728272725	5.30532270341324	-0.246221807605306	0.523847891034112	0.782647016014066
Merged-chr14-8080304-4	chr14	8080215	8080415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348727)	promoter-TSS (NM_001348727)	2.0	NM_025938	67053.0	Mm.210048	NM_025938	ENSMUSG00000023156	Rpp14	2610511E03Rik|AA682089	ribonuclease P 14 subunit	protein-coding	7.08179360185492	7.05077417641834	6.88102247341407	6.92586123713608	6.95317441571686	7.11112667709229	6.92545185329026	7.00609091840985	0.018888189957744	0.920422700692104	0.970488503600563
Merged-chr11-70700799-4	chr11	70700718	70700918	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252485)	promoter-TSS (NM_001252485)	270.0	NM_153103	16562.0	Mm.99996	NM_153103	ENSMUSG00000020821	Kif1c	B430105J22Rik|D11Bwg1349e|Ltxs1|Orch3	kinesin family member 1C	protein-coding	4.71378191452992	4.75134428474135	4.67697286772848	4.26303848902941	4.66759856625386	4.68961954463602	4.79758718383259	4.51164291775795	0.158121254424475	0.669153126889869	0.863397557169305
Merged-chr16-94239810-4	chr16	94239717	94239917	+	845.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	ORR1D2|LTR|ERVL-MaLR	50474.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	4.22869491362779	4.08970970781343	4.14224095239703	3.93059291403848	4.12546059087735	3.95982003439483	4.12400138068222	4.13969039429508	0.00675169016053207	0.986952826052633	0.995239569128295
Merged-chr8-22962856-2	chr8	22962756	22962956	+	791.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	-11980.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	2.70403714847639	3.0746545073087	2.70426319854074	2.84870564797772	3.24161951538122	3.14669946060503	2.96555334038446	3.14678156341607	1.18818214935236	0.0546184630285464	0.244047928702865
Merged-chr6-125509971-3	chr6	125509855	125510055	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-15195.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	4.10753465683487	4.18811549130444	3.91747379074133	3.49505669109425	5.36906135565181	5.01225791545467	5.38621100705121	5.11310149840243	2.96219021788391	5.61548513974977e-14	7.71630534290056e-12
Merged-chr2-32727577-4	chr2	32727499	32727699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252547)	promoter-TSS (NM_001252547)	-90.0	NM_001252547	27387.0	Mm.9593	NM_013781	ENSMUSG00000059013	Sh2d3c	Chat|Nsp3|Shep1	SH2 domain containing 3C	protein-coding	7.62048966454526	7.78425633361902	7.40102788088105	7.54415841158503	7.58631995252705	7.50609014070972	7.63382872727241	7.10275887610117	-0.156681214910813	0.430523197669514	0.721108120456474
Merged-chr9-45095719-3	chr9	45095620	45095820	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005421, intron 6 of 10)	intron (NM_001005421, intron 6 of 10)	16537.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	5.15754972395039	5.59017445015355	5.66488894223742	5.57500661051412	4.38993134129503	3.99522114312289	4.17828050147061	4.06771689824421	-2.88639973534626	6.46093868267333e-12	6.03521200123367e-10
Merged-chr5-30871955-4	chr5	30871834	30872034	+	972.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144525, intron 4 of 16)	intron (NM_144525, intron 4 of 16)	2355.0	NM_144525	68796.0	Mm.205169	NM_144525	ENSMUSG00000038828	Tmem214	1110039B18Rik|4921530J21Rik|AI841294|AU018742|C76280	transmembrane protein 214	protein-coding	4.90307685460969	4.92398285814552	4.62598361799317	4.82675753056731	5.28532841438196	4.846990261535	4.80759892909413	5.09826788525275	0.416411273887957	0.2136109662792	0.519120186160608
Merged-chr1-132157487-4	chr1	132157345	132157545	+	793.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17760.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	2.85601820419308	3.08178718051708	2.85631789241141	2.91947103758439	2.99242511544931	3.02985348553629	2.97380964167974	3.20576295977249	0.498811944415936	0.392531411192718	0.691992389108016
Merged-chr1-71731167-4	chr1	71731065	71731265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77830.0	NR_040308	100042814.0	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	Gm15456	apolipoprotein L 7d	ncRNA	6.69223343659933	6.54524157272196	6.95385762228908	6.67969321484983	6.24483632850588	6.29509024766828	6.60021191147775	6.51835090945288	-0.441492240055472	0.0488017211525594	0.22834767915668
Merged-chr1-84318789-4	chr1	84318698	84318898	+	902.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34153.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	4.57239001584038	4.19287500562423	4.04149930775597	4.57466655439001	4.08232733041018	4.16724111264157	4.22539659063281	4.76991496908966	-0.0829667260345888	0.851287498714158	0.943916765912314
Merged-chr9-55296511-4	chr9	55296404	55296604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-12879.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	6.98979522288223	7.50829729157282	6.94047072833138	6.53531830085907	6.81409860841698	7.24966523242447	6.65193952754053	6.69612975590722	-0.230045719103505	0.397142752635092	0.695612493933522
Merged-chr11-98942900-5	chr11	98942772	98942972	+	931.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177303, intron 1 of 8)	intron (NM_001177303, intron 1 of 8)	3161.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	2.96827828543334	2.76140067863487	3.0313137850504	3.08526506080844	3.06802930302624	3.25983804857822	3.02054071504954	3.20116060489127	0.661137206636977	0.261408902925031	0.573293822445797
Merged-chr19-17264890-4	chr19	17264677	17264877	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74728.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	4.12972800279834	3.87216705394467	4.29798666299908	3.27342780737705	4.07344734017193	4.21187993224845	4.01963273078256	4.1277302937283	0.432519907367561	0.400300466891706	0.698147846003575
Merged-chr11-84129588-4	chr11	84129453	84129653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172562)	promoter-TSS (NM_172562)	15.0	NM_172562	217031.0	Mm.45159	NM_172562	ENSMUSG00000018651	Tada2a	AV319371|D030022J10Rik|Tada2l	transcriptional adaptor 2A	protein-coding	6.26447037081607	6.10112483761695	5.60447595971123	5.76234058376414	5.72780117362675	5.69601401453201	5.75756074358891	5.54327863253519	-0.433794270747328	0.120477714953986	0.384265951913617
Merged-chr8-69395568-4	chr8	69395486	69395686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038043)	promoter-TSS (NR_038043)	-42.0	NR_038043	378466.0	Mm.37846	NM_194351	ENSMUSG00000110444	Gm10033	9330175B10Rik|Gm10311	predicted gene 10033	ncRNA	6.60564450184732	6.53914447762898	6.4918998713643	6.74903667546486	6.58993321282889	6.63364553003685	6.77463477240091	6.61770201586051	0.0600061405686535	0.772564850598561	0.910940763350478
Merged-chr7-98711717-4	chr7	98711631	98711831	+	982.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355114, intron 4 of 5)	intron (NM_001355114, intron 4 of 5)	8484.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	4.74318847772304	4.77923284548161	4.94773436343299	4.76588999386122	4.63664572161738	4.27391818344258	4.60688012383026	4.74082034350218	-0.485093857613136	0.171307352624125	0.464464714253753
Merged-chr4-57028133-4	chr4	57028037	57028237	+	892.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355492, intron 18 of 24)	intron (NM_001355492, intron 18 of 24)	-37746.0	NM_001142965	230235.0	Mm.207654	NM_001142965	ENSMUSG00000045589	Frrs1l	6430704M03Rik	ferric-chelate reductase 1 like	protein-coding	4.44083181490278	4.75076457583809	4.64797138862052	4.98305180864092	4.29510750169051	4.74199282919853	4.50744345357952	4.29725572441028	-0.599557582845843	0.120538300609662	0.384347789235099
Merged-chr17-27056384-4	chr17	27056265	27056465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080553)	promoter-TSS (NM_080553)	-939.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	6.4120537111083	6.13942541192415	6.05836052711696	6.42115603962044	6.03092491705126	6.2556380963435	5.89171163589907	6.01016548581868	-0.348433533514996	0.151905299371885	0.435691763840051
Merged-chr6-115994515-3	chr6	115994456	115994656	+	903.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026376, exon 1 of 36)	exon (NM_026376, exon 1 of 36)	449.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	3.61969524979612	3.43955126500306	3.56624206731635	3.70682123077631	3.51587924235965	3.56580559558039	3.65681377165571	3.8133113120013	0.141961201518453	0.769281847048464	0.909742530773464
Merged-chr10-25196463-3	chr10	25196350	25196550	+	726.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 7 of 7)	Lx7|LINE|L1	3720.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	3.3308600123558	3.26705475170672	3.72683278949666	3.68762574098861	3.29083301296539	3.03683552883503	3.37486302756837	3.20833472302798	-1.02808218205101	0.0722660662550898	0.288849187442219
Merged-chr9-106447636-4	chr9	106447543	106447743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110272)	promoter-TSS (NM_001110272)	35.0	NM_001359225	68644.0	Mm.268925	NM_145919	ENSMUSG00000042210	Abhd14a	1110013B16Rik|AW558221|Dorz1	abhydrolase domain containing 14A	protein-coding	7.68793270732862	7.76149533956089	7.52332843574269	7.79621880490586	7.59092288749637	7.75525152628478	7.54979399891995	7.60810718971285	-0.101929143638946	0.552381335389267	0.799600404125776
Merged-chr10-17722415-4	chr10	17722302	17722502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010828)	promoter-TSS (NM_010828)	-826.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	6.55337543922751	6.133223601719	6.21176237990991	6.62550249157328	6.74690586375781	6.69821314678336	6.61191290040735	6.14365050287959	0.243850712100392	0.336173430127802	0.646244323954596
Merged-chr2-160368051-4	chr2	160367948	160368148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010658)	promoter-TSS (NM_010658)	-983.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	6.21115873271813	6.106354976481	6.19255433057464	6.16257157138273	5.97369250094838	6.48148730562289	6.21873941238629	6.54787588082168	0.221785787433952	0.363532033923626	0.668574361907056
Merged-chr17-36915218-2	chr17	36915119	36915319	+	600.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8573.0	NR_045439	73286.0	Mm.426884	NR_045439	ENSMUSG00000092239	1700031A10Rik	-	RIKEN cDNA 1700031A10 gene	ncRNA	3.04746713870241	3.34886319348752	3.10748110122505	3.16719516824123	2.79819003794346	2.95787578365158	2.97545901762886	3.16273601951938	-0.832615193246656	0.16556260507742	0.456359860078444
Merged-chr7-142391320-3	chr7	142391267	142391467	+	741.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3497.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	3.21336211184611	2.99755885815289	3.15978100868437	3.36779730663164	3.11004540881029	2.80546220110281	2.7705307742197	3.10171536784305	-0.965534300290722	0.128325081517612	0.398585626397538
Merged-chr4-97564960-3	chr4	97564869	97565069	+	747.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16974.0	NM_001122952	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	3.38611311630267	3.21947034256248	3.54918361549615	3.42013346411331	3.59299218937213	3.44045202691393	3.31571683864599	3.5969281392813	0.328634340425093	0.52041073769161	0.780787600139836
Merged-chr1-187215918-2	chr1	187215818	187216018	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028848)	promoter-TSS (NM_028848)	175.0	NM_001357645	67769.0	Mm.138321	NM_026367	ENSMUSG00000039210	Gpatch2	5830433G22Rik|5830436K05Rik|AI427714|AI447508|AW107440|AW491060|Gpatc2	G patch domain containing 2	protein-coding	3.18764396313586	3.23364103860499	3.30429096535865	3.12704877372057	3.33212809223633	3.10071228779442	3.23537415810595	3.50692446704603	0.353164987774319	0.512857119670207	0.776017039843318
Merged-chr15-66561074-4	chr15	66560967	66561167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172514)	promoter-TSS (NM_172514)	-21.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	6.31120426949768	6.57962928754016	6.66497648472803	6.51659635964158	6.59583911788966	6.54586123920611	6.45943498295083	6.52109564401605	0.0135852175292042	0.948783031246059	0.98159051425964
Merged-chr17-33956243-1	chr17	33956143	33956343	+	939.0	f0_balb.idr	promoter-TSS (NM_011296)	promoter-TSS (NM_011296)	153.0	NM_001357329	224705.0	Mm.448614	NM_172620	ENSMUSG00000024319	Vps52	ARE1|D130068D18|D430041K17Rik|SAC2|Sacm2l|tclw5	VPS52 GARP complex subunit	protein-coding	4.78091880832207	4.23043203414263	4.36748969235652	4.16154181963159	4.64638536283474	4.30190130403408	4.34824672638024	4.80935801107474	0.352440236739726	0.391068746185441	0.690939565734194
Merged-chr13-56711959-4	chr13	56711879	56712079	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164042, intron 1 of 6)	L1MB7|LINE|L1	8311.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	4.91111154245275	5.30159211682662	5.24564906977674	5.23720216416221	5.65270042440524	5.38982504137985	5.67785352870524	5.79058277224817	0.78442220903305	0.00649966650636575	0.0575924016253713
Merged-chr9-40709407-3	chr9	40709215	40709415	+	944.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	23351.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	4.18361612984919	4.18592025700673	4.36587426075835	4.41916903855668	3.0709437224035	3.21827998774869	3.32390220788449	3.25830483024829	-4.38419611384957	3.86036695932542e-09	2.22311537053256e-07
Merged-chr9-7897739-4	chr9	7897628	7897828	+	832.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24558.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	4.10209748241675	3.98055235400392	3.84527929614597	4.18960222089433	4.39325608069418	3.96644047072144	3.98917858988915	4.35290849614944	0.389775738399375	0.368812297177493	0.673241107398681
Merged-chr8-119436250-4	chr8	119436160	119436360	+	949.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027950)	promoter-TSS (NM_027950)	-902.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	4.43283442433976	4.5095250882257	4.43354995463013	3.6343922055246	4.52066978786147	4.43322930753866	4.41285137430313	4.43065603877241	0.380948987543239	0.397347006608838	0.69576798253969
Merged-chr5-36560357-3	chr5	36560239	36560439	+	793.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	22058.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	2.51732982793548	2.45547349612618	2.51755650589003	2.10371461086854	3.13628413660552	3.03691030804829	3.54954199724534	3.87044808467044	7.38616382129496	7.69843827429896e-13	8.37870241477562e-11
Merged-chr11-70944777-3	chr11	70944671	70944871	+	867.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083331, intron 12 of 16)	intron (NM_001083331, intron 12 of 16)	25202.0	NM_172394	19069.0	Mm.288962	NM_172394	ENSMUSG00000040667	Nup88	Nup84|Prei2	nucleoporin 88	protein-coding	3.39234716672522	3.52169285460096	3.39276529443063	3.29568279914042	3.83975964350119	3.56781068300106	3.78828053690375	3.45040787971086	0.913475905162553	0.0646536877294108	0.270299083876612
Merged-chr2-145754144-4	chr2	145754043	145754243	+	930.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_033220)	TTS (NR_033220)	-31973.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	4.65899378707727	4.63156803680091	5.20939590332601	4.77305351585543	4.56098952062259	4.87359722899955	4.71592524481721	4.52927726565246	-0.340561204333011	0.349763460700594	0.657263144020476
Merged-chr16-50445219-4	chr16	50445115	50445315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-12749.0	NM_001347240	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	5.89120078469962	6.15526207637313	5.66312769054504	6.36145556693233	6.07008967767697	5.46115674599976	6.05500646418346	5.9560126495997	-0.231163750713658	0.430023132134859	0.720740306563559
Merged-chr6-136989985-2	chr6	136989882	136990082	+	644.375	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	35459.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	4.16181699506747	3.86667401388196	4.02823944226695	3.81624258692692	3.9169504745833	4.24453345291708	4.10069137360468	3.76586237687643	0.137029297228864	0.756996370296562	0.904554066545557
Merged-chr1-64122231-4	chr1	64122119	64122319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033563)	promoter-TSS (NM_033563)	-830.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	7.87409601700488	8.30086851250447	7.9191424409202	7.56025980457469	8.04122994063546	8.14586137314426	7.95721909486977	7.77778774223675	0.0671621992117603	0.745742635455942	0.899696860101332
Merged-chr8-26443245-2	chr8	26443151	26443351	+	886.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	285082.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	3.58660115899135	3.35701451380836	3.42440890912007	3.45225849551995	3.93038884666904	3.41632114622576	3.46747874842919	3.30187465097898	0.358716399078012	0.500896415269214	0.769036602800789
Merged-chr11-61638977-4	chr11	61638876	61639076	+	894.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER76|LTR|ERVL	-14345.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	3.60254153658834	3.88358027554531	3.60298726726042	3.86306339213985	4.05141596127441	4.04184143362173	3.70323021788115	3.87041328050977	0.48813801651483	0.291688842557859	0.604041665437736
Merged-chr1-78537718-4	chr1	78537612	78537812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026713, intron 6 of 6)	intron (NM_026713, intron 6 of 6)	26652.0	NM_026713	68393.0	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	7.80239287329838	7.79669882206435	8.01836792676724	8.1643092961306	7.04194820639054	7.04936647096302	7.33396357658809	6.99570699519774	-1.12998782406169	4.12454706703756e-09	2.35618888992509e-07
Merged-chr18-37955014-4	chr18	37954892	37955092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153793)	promoter-TSS (NM_153793)	-4.0	NM_010411	15183.0	Mm.20521	NM_010411	ENSMUSG00000024454	Hdac3	AW537363	histone deacetylase 3	protein-coding	7.71515649010974	7.00163007357516	7.27834664983478	7.18475429090343	7.25460120848924	7.59684646836866	7.37356759865257	7.25167223346266	0.0775887907552957	0.722976243685986	0.889323714204725
Merged-chr11-97547105-5	chr11	97547007	97547207	+	800.266663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 3 of 19)	CpG	28019.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	3.2048799138496	3.29739890456759	3.32312987307438	2.95196714711193	3.26102913086954	3.18754839441475	3.46670027204212	3.5285131640377	0.645202775473873	0.242835702395521	0.553733860669896
Merged-chr14-33371418-3	chr14	33371301	33371501	+	819.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCTG)n|Simple_repeat|Simple_repeat	39623.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	3.36971588648557	3.3770260052157	3.20081072429503	3.30541180413963	3.25589961014968	3.04181608658855	3.40769838997778	3.19924430006994	-0.296355352490814	0.586028632099707	0.818516944044141
Merged-chr19-40629122-4	chr19	40629016	40629216	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	16750.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	5.28004632810997	5.19728283397786	5.47737923833415	5.45832839705208	5.22948519988247	4.94819859078856	5.0242416728905	5.57318048620741	-0.259805906578883	0.408315333676799	0.704294465750557
Merged-chr15-41789578-4	chr15	41789416	41789616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130885)	promoter-TSS (NM_130885)	1.0	NM_130885	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	5.40974975057559	5.02864949162366	5.17808129933056	5.25067880763855	4.96235659588316	5.1838428104339	5.12059707614486	5.38008717325549	-0.113841505086742	0.711423318458908	0.884405406929924
Merged-chr15-85090945-4	chr15	85090852	85091052	+	798.866638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_080470, exon 17 of 25)	exon (NM_080470, exon 17 of 25)	41005.0	NM_080470	140557.0	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	4.1178200003525	4.1924460189659	4.1659773456956	4.28120884976182	3.98774444357793	4.42617711883056	4.27934448066474	4.16345500300414	0.0410359219966083	0.919323396158189	0.970285021467879
Merged-chr3-14880535-4	chr3	14880445	14880645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5724.0	NM_001357334	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	7.16759046236801	7.28003297851675	7.14598838695966	7.12953654812813	7.42707891588737	7.28785579207903	7.14409641499828	6.79876192352058	0.0163204260717062	0.937117346541195	0.977210490892393
Merged-chr7-128302355-4	chr7	128302260	128302460	+	854.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4229.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	4.00820459203365	4.05160612670176	3.95915300343905	3.97601431595474	4.11209409667003	3.73320529675015	3.99178069657614	4.41755131009441	0.242950430869055	0.580322611441102	0.815718435955212
Merged-chr13-81358965-2	chr13	81358865	81359065	+	777.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 83 of 89)	intron (NM_054053, intron 83 of 89)	274179.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	3.57882573577326	3.57973129865771	3.27780668371958	3.28990360951606	3.56416664303673	3.99020850183626	3.5103467694479	3.63004026133119	0.801525107004352	0.11507126731245	0.375410067073572
Merged-chr14-31428366-4	chr14	31428277	31428477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	7723.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	6.07556948938644	5.6856815760787	6.3863508337729	6.61943870389143	5.62504942020027	5.72771372419086	6.08586781335311	6.05146427448923	-0.572386486877896	0.0583014564909119	0.253826437426809
Merged-chr2-154256248-4	chr2	154256122	154256322	+	778.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1657.0	NM_175167	71425.0	Mm.389341	NM_175167	ENSMUSG00000067998	Bpifb9a	4833413D08Rik|AI413838	BPI fold containing family B, member 9A	protein-coding	3.99418765656152	3.84454608090212	4.26506230797811	4.10286748966617	4.050550979566	4.0114571272019	4.32252867350127	4.08904139707029	0.162710101745936	0.699933727133761	0.878995443879637
Merged-chr2-51934993-4	chr2	51934930	51935130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141982)	promoter-TSS (NM_001141982)	133.0	NM_030243	71684.0	Mm.28309	NM_030243	ENSMUSG00000036249	Rbm43	0610033I05Rik	RNA binding motif protein 43	protein-coding	6.48586754956198	6.14899412404817	6.16406027504437	6.32565308864552	6.33862521263634	6.04487096127476	6.38921897565866	6.25792745170913	-0.0293738009529506	0.899094126679947	0.962393017588858
Merged-chr14-55763643-5	chr14	55763542	55763742	+	858.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020490)	TTS (NM_020490)	2214.0	NM_020490	57260.0	Mm.159670	NM_020490	ENSMUSG00000040432	Ltb4r2	5830462O07Rik|BLT2|LTB4-R 2|LTB4-R-2|LTB4-R2	leukotriene B4 receptor 2	protein-coding	4.2802952100385	4.21068247094349	3.89474675442407	4.05173022015184	4.41509369131695	4.0702143349396	4.03565564798871	4.43378686310259	0.368570935849045	0.379462562128352	0.6820084441689
Merged-chr14-31494627-4	chr14	31494544	31494744	+	989.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028932)	promoter-TSS (NM_028932)	114.0	NM_001359850	67011.0	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	5.20521819586292	5.57673612518058	4.91375703711983	5.24468642359959	5.20069510154641	5.47484961601455	5.36168562349807	5.54419164834629	0.239417771469263	0.441013307593906	0.728373839212601
Merged-chr9-107982823-4	chr9	107982710	107982910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023738, intron 21 of 23)	intron (NM_023738, intron 21 of 23)	3106.0	NM_026597	68176.0	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	6.63698332044168	6.6611204216102	6.60779424038281	6.51505885617048	6.41053682967331	6.23782576543655	6.71833870336695	6.47379626282475	-0.188314188109324	0.388561416552511	0.688981838974675
Merged-chr8-119784449-4	chr8	119784350	119784550	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6034.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	5.40852955739566	5.39229096746135	4.86499985388175	5.31793656356935	5.48327159969777	4.96117393118044	5.40951410171532	5.56160050493754	0.199068925538768	0.534142971771985	0.789066961676578
Merged-chr4-95416862-4	chr4	95416760	95416960	+	974.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140647.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	5.40435253686557	5.09602563066822	5.99240006992155	5.98944477599944	5.54655919209625	5.02060740773616	5.90173271563519	5.98807012684603	-0.0267907964253817	0.942347593064655	0.979088236393896
Merged-chr9-116146643-3	chr9	116146591	116146791	+	703.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	28672.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	2.57918888581861	2.54407523706411	2.69570714937208	2.88363737175539	2.43980510753844	2.2495253872594	2.22892138468181	2.30906226272513	-2.30642386050589	0.0070046783437989	0.0609156208929192
Merged-chr16-65450867-4	chr16	65450761	65450961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69768.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	6.92830881402704	7.06856462135552	6.60417999438805	6.83204847217194	7.20459830646504	7.16933817822453	6.90733825262058	6.72761780521593	0.211081761536098	0.333590260168964	0.644358782322028
Merged-chr17-7897319-4	chr17	7897131	7897331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28769.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	5.99431533664633	5.98986795131343	5.80716241853788	5.85959967089988	6.33259128914369	6.17054196274171	6.06955017415791	6.11639205556864	0.426774609633461	0.0696158338533632	0.282266330837285
Merged-chr9-22531394-3	chr9	22531282	22531482	+	741.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360259, intron 5 of 22)	MTEa|LTR|ERVL-MaLR	55667.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	3.16451359760101	2.94810372295855	3.11043187170514	3.33878151109379	2.70708983088476	2.82947517273667	2.98320791289823	2.92996895209825	-1.29650671546532	0.0404089178327014	0.203097469454445
Merged-chr6-122599403-5	chr6	122599233	122599433	+	915.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134391, intron 2 of 7)	ID_B1|SINE|B4	3111.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	4.8408764084586	4.92633442669336	4.40741973141411	4.7380259884403	5.04769587117324	5.08620315804835	4.66312698353585	5.21790685316545	0.549880758360596	0.116417120847655	0.377476808870985
Merged-chr15-100743475-4	chr15	100743381	100743581	+	983.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-10744.0	NR_045782	619313.0	Mm.123436	NR_045781	ENSMUSG00000116504	I730030J21Rik	-	RIKEN cDNA I730030J21 gene	ncRNA	4.86233849313848	4.81213984021574	4.6585405479315	4.79068147582674	5.23982667864505	5.0751874945881	5.25255112178919	5.13140808370342	0.771567855670465	0.0122414110255658	0.0912006903274806
Merged-chr17-45734121-4	chr17	45734045	45734245	+	878.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028164)	promoter-TSS (NM_028164)	-301.0	NM_028164	72240.0	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	3.97613138986782	4.27377833606428	4.54186267634094	4.20392212588849	4.10365383641168	4.20636470449094	4.1604039098215	4.3088936497013	-0.166870429205362	0.683701703340312	0.870394242877558
Merged-chr2-49372184-3	chr2	49372084	49372284	+	856.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79302.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	3.17782075901983	3.01526169085728	3.17825013296734	3.11774731539145	3.0967970384183	2.900721231787	3.05182882168331	3.17651365710456	-0.240771440362485	0.672708254046217	0.86532395075008
Merged-chr2-27475700-4	chr2	27475616	27475816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113574)	promoter-TSS (NM_001113574)	-43.0	NM_001113574	67382.0	Mm.28721	NM_023336	ENSMUSG00000026918	Brd3	2410084F24Rik|AW060456|Fsrg2|ORFX|RINGL3	bromodomain containing 3	protein-coding	7.32650652228296	7.35363141757336	6.96371462532843	7.25217013947895	7.30374591273976	7.16851754435448	7.66565759364016	7.22744783343825	0.163955403495766	0.423530506304168	0.715439587731077
Merged-chr7-100242556-4	chr7	100242452	100242652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027629, intron 1 of 13)	intron (NM_027629, intron 1 of 13)	14945.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	5.32856808579795	5.54785432323162	5.5259835785276	5.93464346157568	5.46570487052496	4.90810245931278	5.10811399763094	5.19830323090231	-0.745618811588842	0.0214179302549437	0.133987243594361
Merged-chr10-85957798-4	chr10	85957678	85957878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145422)	promoter-TSS (NM_145422)	15.0	NM_145422	28088.0	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	7.05835721534514	6.66050200485728	6.60335852012862	7.02177625043834	6.97757559140371	6.89196330831016	6.75445455640631	7.00739941453891	0.0738110672713918	0.731591269051702	0.893711507171347
Merged-chr4-15987370-4	chr4	15987267	15987467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013752, intron 13 of 15)	Lx9|LINE|L1	26471.0	NM_001355615	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	5.26237799910202	5.48417024362022	5.22936862517357	5.86343889745614	5.99596513159927	4.92573995659973	5.70457190314979	5.63386498412987	0.218812122193172	0.540203131043947	0.792610460598967
Merged-chr9-110985784-3	chr9	110985690	110985890	+	813.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153100, exon 3 of 3)	3' UTR (NM_153100, exon 3 of 3)	-3709.0	NR_152179	791282.0	Mm.406769	NR_152179	ENSMUSG00000057802	Gm10030	-	predicted gene 10030	ncRNA	3.61931474145736	3.38587679806376	3.88555761151508	3.59105490352557	3.63752628717155	3.3967685076257	3.06839402362046	3.14752079392012	-0.972363042808248	0.0985927530120333	0.344124629365151
Merged-chr3-52755124-4	chr3	52754994	52755194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038079, intron 1 of 3)	MIR|SINE|MIR	15370.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	5.95808706535671	6.26685641210643	6.79019095720721	6.64296173742922	7.10749355863423	6.99381877116224	6.94700512950982	6.82621033310117	0.726608726241902	0.00342500385512881	0.0354189088194412
Merged-chr11-69092933-4	chr11	69092819	69093019	+	830.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009497)	TTS (NM_009497)	4391.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	3.82442151361442	3.63073437659346	3.92857587854981	3.63590524670905	3.97109943068795	4.19612229536744	3.63910279552283	4.44872652176864	0.934199133658218	0.0494030221288356	0.230010381014927
Merged-chr9-109118271-4	chr9	109118186	109118386	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172775, exon 38 of 38)	3' UTR (NM_172775, exon 38 of 38)	22850.0	NM_172775	235611.0	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	5.40767694494303	5.07697535082229	5.69934186171109	5.70520235758925	4.86405998356826	5.31187349836252	4.96868877732093	4.87098048507967	-0.9139870806488	0.00590903711747042	0.0536752619939289
Merged-chr2-59396859-3	chr2	59396759	59396959	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10177.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	3.96729032646203	3.67921456428717	3.6826526876246	3.60819190279451	3.44274440397591	3.56631259792732	3.81654532942562	3.83096428039566	-0.197553051185895	0.685483231119061	0.871409613223223
Merged-chr13-37963589-4	chr13	37963480	37963680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30628.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	6.53963325368766	6.41931118582224	6.04161207990462	5.96499492989497	6.40007359976151	6.48220184573484	6.19894298265101	6.2648305153718	0.136349218833472	0.587010157875113	0.819013564908904
Merged-chr10-77978572-4	chr10	77978498	77978698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026431)	promoter-TSS (NM_026431)	-52.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	8.55275727256272	8.47203583141731	8.43727356838371	8.44215987210509	8.3089585083348	8.54130513040289	8.41834165807509	8.2972846721119	-0.105351806528923	0.485998092073001	0.759731583591333
Merged-chr14-57889819-4	chr14	57889714	57889914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029492, intron 1 of 12)	CpG	522.0	NM_029492	75965.0	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|HK11	zinc finger, DHHC domain containing 20	protein-coding	5.02113670741859	4.79885737892281	5.16064453014135	5.25799013251492	5.22193815791461	5.16286983016643	5.47592233992789	5.66363026845459	0.566963426927779	0.0767118702836817	0.299384183844523
Merged-chr9-101076668-4	chr9	101076575	101076775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001100451, intron 1 of 1)	intron (NM_001100451, intron 1 of 1)	1913.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	6.15723020631181	6.64362579760898	6.55505906370955	5.73434657287263	6.6187650152264	6.65093110183119	6.53672320153293	6.08878285733149	0.271192241522016	0.350625914753839	0.658186562602986
Merged-chr13-23712188-4	chr13	23712077	23712277	+	959.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1323.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	4.71736320330772	4.6869214846316	4.71811870342444	5.09139872362035	5.19152137829011	4.72512751810803	5.13054042124262	4.54344897052285	0.21055401405753	0.571487172665386	0.810639407396363
Merged-chr2-24386483-4	chr2	24386351	24386551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355232)	promoter-TSS (NM_001355232)	-165.0	NM_001355232	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	5.58255184899911	5.40722757232008	5.45729944103333	4.94753957008513	5.41508304639369	5.1952964366477	5.02963859649713	5.25239971768622	-0.207674360360157	0.52301015803534	0.782317068860536
Merged-chr13-38634530-3	chr13	38634432	38634632	+	637.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139063, intron 1 of 4)	intron (NM_139063, intron 1 of 4)	577.0	NM_139063	17828.0	Mm.261554	NM_139063	ENSMUSG00000038982	Bloc1s5	1810074A19Rik|Muted|mu	biogenesis of lysosomal organelles complex-1, subunit 5, muted	protein-coding	3.38165567534048	3.39911765293905	3.58836679750894	3.14176362915335	3.21887283250327	3.37842421716031	3.36886505141094	3.38026112381202	-0.147264543529411	0.783595874658801	0.91572436110875
Merged-chr1-144406781-4	chr1	144406695	144406895	+	662.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157691.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	3.87129980636896	3.8606158076447	4.02124622739099	3.84859540360507	4.01078496339676	4.2802832148176	4.00379518203357	3.92130751600128	0.436071973118129	0.303817450599957	0.616555796305716
Merged-chr4-83273914-4	chr4	83273797	83273997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 2 of 19)	intron (NM_027238, intron 2 of 19)	50292.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	7.98674273157259	8.02741125455261	8.38675608133621	8.31501883765069	7.94085299854965	7.7807720579434	8.26474610821113	7.79691186754821	-0.297026971882452	0.123174029580631	0.389140250466359
Merged-chr10-14207863-4	chr10	14207762	14207962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	241483.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	7.14484571601673	6.94780640079043	7.25458467598571	7.3263907215898	6.86403998812185	7.11403347356697	7.1214408781545	6.95844636812175	-0.233297494523625	0.240367733427803	0.550870712287303
Merged-chr1-193002501-2	chr1	193002395	193002595	+	788.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_001301370, intron 2 of 8)	intron (NM_001301370, intron 2 of 8)	33280.0	NM_001301370	329324.0	Mm.76710	NM_181546	ENSMUSG00000016200	Syt14	B230320I09Rik|sytXIV	synaptotagmin XIV	protein-coding	2.58229474931251	2.51971395792163	2.58252455413453	2.16808061361687	3.24663753663336	3.40468988325782	3.63990826263006	3.65725379327713	7.4113095247119	1.74772921959734e-13	2.17105790788341e-11
Merged-chr13-40844319-4	chr13	40844221	40844421	+	992.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15447.0	NM_023887	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	5.59563086660884	5.02895610056689	5.0310145486507	5.63102802574677	5.23136720660348	5.41311887470073	5.41635290138488	5.16919842189152	-0.107842708146099	0.740249586047272	0.897756475187998
Merged-chr10-19015411-4	chr10	19015309	19015509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009397)	promoter-TSS (NM_009397)	1.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	8.67854469887562	8.9393388927365	8.88068157242537	8.38051532561184	8.58789132770117	8.90079621026347	8.49279007532168	8.49175543723999	-0.131525227051474	0.487164236417953	0.760600900973846
Merged-chr9-21287905-6	chr9	21287782	21287982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145416)	promoter-TSS (NM_145416)	87.0	NM_145416	215194.0	Mm.290690	NM_145416	ENSMUSG00000035047	Kri1	-	KRI1 homolog	protein-coding	7.04090559194674	7.58526740419389	7.59624797865112	7.37884763123471	7.25687967717638	7.68573422361723	7.39727891110548	7.43854952051582	0.0383159058911076	0.853086881276474	0.944678751070911
Merged-chr14-22847830-4	chr14	22847719	22847919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 6 of 6)	intron (NM_028275, intron 6 of 6)	246752.0	NR_033550	791307.0	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	-	predicted gene 10248	ncRNA	6.03367835673786	6.3214596338947	6.77760744283495	6.6829939818094	5.18696240586112	5.52463454370821	6.04566362553989	5.68657278880251	-1.33424125371926	1.51150603270168e-05	0.000398177231316333
Merged-chr4-59354615-3	chr4	59354509	59354709	+	837.633362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 10 of 16)	MLT1D|LTR|ERVL-MaLR	84024.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	2.8731756298642	2.77925340950582	3.04501813601154	3.01175585787878	2.63688852474365	2.85094814650521	2.66852569062103	2.93174110055048	-0.74650376649666	0.245152872798419	0.556239369290278
Merged-chr11-78826565-4	chr11	78826456	78826656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001076681)	promoter-TSS (NM_001076681)	-39.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	6.82631975369483	6.82693230284462	6.247876055315	6.3949808641129	6.89911794472313	7.12096492434214	6.60192666039436	7.22757491960661	0.547414462853058	0.0271791383599718	0.156980358991057
Merged-chr16-91314335-3	chr16	91314242	91314442	+	740.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44573.0	NM_016968	50914.0	Mm.39300	NM_016968	ENSMUSG00000046160	Olig1	AI836478|AW494459|Bhlhb6|Olg-1|Oligo1|bHLHe21	oligodendrocyte transcription factor 1	protein-coding	3.7076932329562	3.78635667240728	3.44762749305186	3.48293519565243	3.45895576960685	3.43997059072594	3.54404185697361	3.32512493850153	-0.547260687247062	0.281563100667209	0.593695528109466
Merged-chr18-25242382-3	chr18	25242288	25242488	+	896.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033532, intron 5 of 10)	intron (NM_001033532, intron 5 of 10)	73368.0	NM_001033532	225289.0	Mm.391081	NM_001033532	ENSMUSG00000033632	AW554918	4921538P22|AI461742|Kiaa1328|mKIAA1328	expressed sequence AW554918	protein-coding	3.74090926706621	3.54806188924745	3.42033193899843	3.74540002131478	3.42615985076447	3.90807331898413	3.40813365321534	3.35663622360595	-0.274961967158342	0.599219693279533	0.826266147771094
Merged-chr4-55964192-4	chr4	55964095	55964295	+	981.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-431720.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	5.82605612526674	5.88953647058877	5.32381363522036	5.71448460882171	5.62932743237793	5.65247663131448	5.47765655095569	5.07076096514774	-0.384874623320164	0.20269239226201	0.505268676501282
Merged-chr6-142735529-4	chr6	142735429	142735629	+	780.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21157.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	3.89417473402311	3.6989726059728	3.49942370596994	3.97355635058532	3.98517930203918	4.06442146058736	3.97103246729556	3.79125286631669	0.459344287079354	0.32443929853654	0.636049743016795
Merged-chr7-16874353-4	chr7	16874250	16874450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081655)	promoter-TSS (NM_001081655)	536.0	NR_152128	320950.0	Mm.420078	NR_152128	ENSMUSG00000097842	9330104G04Rik	-	RIKEN cDNA 9330104G04 gene	ncRNA	5.72851652065526	6.04793096055645	5.88041071518997	5.71652357755357	6.29877236142562	6.25203314108205	5.89675113982755	6.03208472053007	0.45999532607468	0.0680582375825424	0.278473056615761
Merged-chr15-28395889-4	chr15	28395801	28396001	+	912.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 58 of 78)	(TTC)n|Simple_repeat|Simple_repeat	192135.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	4.59014548319945	4.4399984133691	4.83337701671966	5.22830200107582	5.05434162905022	4.96991660884876	5.01229947944782	4.67382581010582	0.212565028247639	0.580266377767916	0.815718435955212
Merged-chr9-72111213-4	chr9	72111072	72111272	+	989.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253862)	promoter-TSS (NM_001253862)	29.0	NM_001253862	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	4.96078334774417	4.88551159554994	4.47341179856355	4.81728255100327	4.96680659560959	4.83467821237529	5.20798150881456	4.99162156863144	0.41369647213917	0.216993826200488	0.523768305304505
Merged-chr18-67243149-4	chr18	67243065	67243265	+	838.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172630, intron 2 of 10)	PB1D11|SINE|Alu	2665.0	NM_172630	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	4.0866471795546	3.92190871987874	3.88214603343269	4.31609868440393	3.76551124577146	3.76116797040163	4.24439669916619	4.64835411028933	0.223198892915389	0.654654615119557	0.855659697629251
Merged-chr18-50024196-4	chr18	50024115	50024315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	-6769.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	8.104927769094	8.10914224017361	8.0999360712739	7.97698046985387	8.0938319448281	8.15082109137523	8.22684943221557	7.94689843324476	0.0496071273368716	0.755265559859318	0.903634896880696
Merged-chr13-29986210-4	chr13	29986093	29986293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010093)	promoter-TSS (NM_010093)	-130.0	NM_010093	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	9.2869961301805	9.39430219508554	9.34107327039917	9.41645683711717	9.54430576700369	9.69307699389178	9.79693269044163	9.34116578325629	0.297422154677041	0.0525795770594399	0.238927586536892
Merged-chr15-73632447-4	chr15	73632361	73632561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7717.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	6.48040899233863	6.21839926884877	6.74514739175389	7.07341454420143	6.09951421099035	5.75352697379289	6.27448428539181	6.09992717189976	-0.907611263508262	0.00107772516631827	0.0142718883001616
Merged-chr6-37431525-4	chr6	37431396	37431596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	(CAGAGA)n|Simple_repeat|Simple_repeat	10652.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	6.54672944635928	6.74360623140876	6.17733795308119	6.03101510838816	6.20472425930433	6.54309337203408	6.36936673576647	5.84793196775971	-0.20350644077881	0.468539045701259	0.747803507343786
Merged-chr7-78847278-4	chr7	78847163	78847363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029585)	promoter-TSS (NM_029585)	-52.0	NM_029585	76375.0	Mm.250541	NM_029585	ENSMUSG00000030610	Det1	2610034H20Rik	de-etiolated homolog 1 (Arabidopsis)	protein-coding	6.89955381050602	6.94904935743553	6.61878681639092	7.0315812860833	6.88770345279464	6.95197649480744	6.97965810225774	7.05771962049484	0.100135516671546	0.618482592686648	0.836000920352511
Merged-chr18-61106843-4	chr18	61106800	61107000	+	874.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 2 of 21)	intron (NM_001037859, intron 2 of 21)	1328.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	3.29202584159131	3.5720003423768	3.52806112914467	3.12875758764325	3.48866685177126	3.47083319496499	3.51365482523625	3.85596856666996	0.691155909888022	0.190001066549057	0.489103163231511
Merged-chr13-91808359-3	chr13	91808265	91808465	+	897.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145453)	promoter-TSS (NM_145453)	-669.0	NM_145453	69085.0	Mm.52356	NM_145453	ENSMUSG00000021621	Zcchc9	1810019C21Rik	zinc finger, CCHC domain containing 9	protein-coding	2.90694030206594	3.22475985319139	3.50266424418168	3.21285136224809	3.06943537705628	3.22706606588835	3.33707651742465	3.45194543333483	0.179977718629054	0.756922230057922	0.904554066545557
Merged-chr5-137858138-4	chr5	137858039	137858239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133209)	promoter-TSS (NM_133209)	-90.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	5.28526805232834	5.32631470157758	5.37626429954092	4.92361325531029	5.42881567413764	5.55009290031711	5.34939355568396	5.56045707308348	0.455992224498488	0.124448404558215	0.391622661835147
Merged-chr15-58324236-4	chr15	58324109	58324309	+	980.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177755)	promoter-TSS (NM_177755)	-40.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	6.39122396539609	6.74483765614752	5.98469448831275	5.9333452346269	6.16286705051131	5.53124177206884	5.60578974940919	5.30663462920728	-0.939110313928622	0.00494783875769433	0.0471923012092647
Merged-chr13-49205635-4	chr13	49205543	49205743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 2 of 5)	MIRb|SINE|MIR	10383.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	8.52596215242973	8.73777329279767	9.00088418812433	8.67900974604709	8.81980382424509	8.94184764287751	8.94356872760902	8.65920020267948	0.124485206638484	0.456765584552607	0.740072330310487
Merged-chr17-35135859-1	chr17	35135759	35135959	+	1000.0	f0_c57.idr	intron (NM_001252469, intron 1 of 23)	intron (NM_001252469, intron 1 of 23)	145.0	NM_001252469	224727.0	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	5.63710591487406	6.07923747768125	5.5231510654387	5.3555392885499	6.13117422580448	6.16922335542105	6.02482179847483	5.66128275978852	0.555435168255512	0.0586407133135437	0.254853299117397
Merged-chr18-4032545-4	chr18	4032448	4032648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-133284.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	6.31027544553077	5.61365072963659	5.89163788492068	5.81714376650881	6.13577966937958	6.28363660606469	5.93042296929952	6.10466839189709	0.307077255046021	0.247987444573561	0.559137354284593
Merged-chr14-103844519-3	chr14	103844435	103844635	+	684.377747	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007904)	promoter-TSS (NM_007904)	-59.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	3.42813632353402	3.680756922252	3.2490778295234	3.373283098793	3.15443421134956	3.54416231860596	3.29984430365559	3.63254846146207	-0.0883027402418515	0.87116410980161	0.951579046411027
Merged-chr6-53286543-3	chr6	53286432	53286632	+	867.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001327821)	promoter-TSS (NM_001327821)	-771.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	3.29974247850732	3.55983883520052	3.41825041088876	3.42090699141677	2.93318822200068	3.74578593518776	3.51162662140267	3.35874024550741	-0.0375450166014231	0.948749084737975	0.981573157037278
Merged-chr5-72172837-4	chr5	72172728	72172928	+	978.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4639.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	5.21814990416005	5.48258314749061	5.11952832689437	5.48191594904243	5.27394818625393	5.62322011414346	5.02443765207446	4.97038017749462	-0.179502479604033	0.577716717645662	0.814234763188337
Merged-chr10-24640800-6	chr10	24640761	24640961	+	990.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008813, exon 25 of 25)	3' UTR (NM_008813, exon 25 of 25)	45419.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	3.47772913524539	3.25058269589984	3.68429009828468	3.43812100062582	3.3064987274826	3.70314674061951	3.57038271005581	3.47629700989967	0.160632836630807	0.755696261395715	0.903912059264182
Merged-chr1-135283079-2	chr1	135282972	135283172	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001159624, intron 1 of 9)	intron (NM_001159624, intron 1 of 9)	1012.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	5.25251767418916	5.48458056542656	5.82378050032824	5.59355735677365	5.76074596773723	5.131729264423	5.52892731137947	5.94408756222581	0.129565804086492	0.679078285152982	0.868308212386227
Merged-chr14-54883322-4	chr14	54883235	54883435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007537)	promoter-TSS (NM_007537)	-90.0	NM_007537	12050.0	Mm.6967	NM_007537	ENSMUSG00000089682	Bcl2l2	AW048834|Bcl-w|Gtrgal2|Gtrosa41|bclw|c98	BCL2-like 2	protein-coding	5.28736415110096	5.17562807677725	4.69480145510813	5.17649257012326	5.35037248484875	5.4612394094407	5.34742516457	5.31393602601495	0.470827271641771	0.125171911680129	0.392687507570294
Merged-chr5-31200813-3	chr5	31200716	31200916	+	958.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175311, exon 3 of 4)	exon (NM_175311, exon 3 of 4)	1226.0	NM_001177901	101023.0	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	4.08369395155404	3.87562451477432	4.29383501735572	4.07974427061031	3.81483173105806	4.25471164205001	3.58029316446327	4.03544277533548	-0.401841606385662	0.388132708631327	0.688847007122855
Merged-chr1-106643473-4	chr1	106643368	106643568	+	778.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	70822.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	2.95459264507892	3.19954613070614	2.95487980426398	3.10937366713805	3.32791171210259	3.3828108492199	3.46010495619975	3.26777608984397	1.10322931563113	0.0460672016710627	0.220327427602795
Merged-chr10-88504018-4	chr10	88503916	88504116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146690)	promoter-TSS (NM_001146690)	-46.0	NM_001146690	212862.0	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	8.22736077268584	8.33067876679036	8.24034180225553	8.23938658152097	8.12034654042911	8.23080044518176	8.38402711105712	8.05452298437082	-0.0745300708047233	0.639148382132888	0.847469697514773
Merged-chr14-40914936-1	chr14	40914836	40915036	+	661.0	f0_balb.idr	intron (NM_145928, intron 5 of 8)	intron (NM_145928, intron 5 of 8)	-21971.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	3.30683879429649	3.08434034840739	3.20011190941981	3.26740056597124	2.78729666552243	3.19365984725197	3.07213173756364	3.0189772180225	-0.819025234798815	0.167434845204004	0.459084932464399
Merged-chr4-138973555-4	chr4	138973473	138973673	+	993.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029857, intron 1 of 16)	intron (NM_029857, intron 1 of 16)	668.0	NM_029857	77056.0	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	4.81852303940794	5.50458424688106	5.00176186243838	4.5218619249314	5.22354747810468	4.91691135542649	4.9080456220618	4.85469131338331	-0.0332551670724598	0.931106723148879	0.975254729027921
Merged-chr1-152556204-3	chr1	152556096	152556296	+	872.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 5 of 17)	intron (NM_016846, intron 5 of 17)	69021.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	3.38188407623703	3.4098273167069	3.49325041896096	3.55040146713559	3.23852867202792	3.608783607215	3.25020336603601	3.54324702930054	-0.175548322950882	0.736450316725641	0.895993666633144
Merged-chr14-47351643-3	chr14	47351557	47351757	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR1B|LTR|ERV1	-22203.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	5.55602026787024	5.81920556771659	5.68497655441931	5.4120696220051	3.87122587360589	4.1028516448793	4.32532919910617	4.39692625238264	-3.19734878226039	5.59020621732943e-15	9.04330200780208e-13
Merged-chr10-94116470-4	chr10	94116362	94116562	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 8 of 20)	intron (NM_053072, intron 8 of 20)	-31469.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	4.83891439261593	4.65575854526408	4.19804273197184	4.36600525762893	5.05906502461006	5.14899647746866	4.98429400796005	5.09743242226967	1.11871584820081	0.00141879079179849	0.017858198014045
Merged-chr6-119358304-3	chr6	119358193	119358393	+	999.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355692, intron 6 of 7)	intron (NM_001355692, intron 6 of 7)	-27527.0	NM_172492	211187.0	Mm.121498	NM_172492	ENSMUSG00000055003	Lrtm2	A230084J22|AI841794	leucine-rich repeats and transmembrane domains 2	protein-coding	4.52315341121234	4.0557989393254	4.76318049492481	4.94311715139426	3.91944284986936	4.09355717122893	4.00737981674386	4.12753667162124	-1.44152728925204	0.0012495887726489	0.0160939319173887
Merged-chr7-27449440-4	chr7	27449343	27449543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144923, intron 1 of 4)	intron (NM_144923, intron 1 of 4)	1465.0	NM_144923	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	6.40414391353952	6.22853519616147	6.7011203276841	6.45191404594172	6.360027552061	6.09912855234238	6.68065967193945	6.41812495362994	-0.0695590380935634	0.772219450791597	0.910810383351782
Merged-chr11-9011154-4	chr11	9011070	9011270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303532)	promoter-TSS (NM_001303532)	21.0	NM_001303610	15574.0	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	HUS1 checkpoint clamp component	protein-coding	5.79094469346745	5.85607616468325	5.63752933588015	5.53658540488322	5.95687497929777	5.86718258703501	5.89928065405738	6.00926706585298	0.385313827957684	0.124771613405626	0.392136995346126
Merged-chr3-41468080-3	chr3	41468013	41468213	+	958.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	25086.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	3.24203276957998	3.9080368060141	3.57148505360902	3.05797593284098	3.32679163785869	3.15421542722707	3.40321291806804	2.96620342246084	-0.91877236573963	0.145473838374066	0.42506906164317
Merged-chr18-23811994-3	chr18	23811944	23812144	+	768.377747	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	8074.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	3.40875109344512	3.37249332006179	3.23836235706388	3.38204328285773	3.08923488560926	3.35064699893513	3.16548471212677	3.55766325750301	-0.200476586243254	0.71320773911675	0.88527884500467
Merged-chr13-44646062-4	chr13	44645969	44646169	+	915.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-84705.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	4.83110253313249	4.54752730515666	5.09303124773884	5.35091003366443	4.33248481481803	4.19924853061584	5.12444565029947	4.75410047803854	-0.70228913236515	0.106470308029085	0.359730861309263
Merged-chr12-99884474-4	chr12	99884343	99884543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028354)	promoter-TSS (NM_028354)	-72.0	NM_028354	104884.0	Mm.312323	NM_028354	ENSMUSG00000021177	Tdp1	2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1	tyrosyl-DNA phosphodiesterase 1	protein-coding	7.18884881135343	7.15553852613455	6.39120874925964	7.02307927173799	6.97750382991548	6.93862438321328	6.52248763690753	6.44392672251206	-0.325488432158265	0.208013218790398	0.512131970751303
Merged-chr6-129876758-4	chr6	129876644	129876844	+	826.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133203)	promoter-TSS (NM_133203)	-72.0	NM_133203	170733.0	Mm.155514	NM_133203	ENSMUSG00000014543	Klra17	Ly49q|Ly49q1	killer cell lectin-like receptor, subfamily A, member 17	protein-coding	3.78161661276075	3.99216510519555	4.06115335209322	4.42304326918432	4.31088987293552	4.18549938427351	4.35226373522066	4.40858819388543	0.511552785911039	0.246610430139077	0.557837855749496
Merged-chr3-126829940-3	chr3	126829842	126830042	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 14 of 18)	intron (NM_001025438, intron 14 of 18)	113444.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	6.29387155204152	6.01033319823573	6.21830339884545	6.53565330490334	4.30051237938654	4.52996930775654	4.36334246684032	4.44064198473265	-3.70492731383941	4.82888115586048e-24	2.72789628407138e-21
Merged-chr7-118275403-4	chr7	118275308	118275508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	31501.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	5.63437418286665	5.47967555901717	5.47939201032734	5.15066742994622	5.13970619844993	5.56869132185754	5.5056083929423	5.65554216474235	0.0697456042298338	0.818796869160782	0.930518135008626
Merged-chr4-63586321-4	chr4	63586198	63586398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356354)	TTS (NM_001356354)	14466.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	5.80283219116062	6.16331851655988	6.2625877335887	6.07273787780077	5.69950711304059	5.93008707657644	5.61502192480524	6.24052167401577	-0.31328587069031	0.249043778447571	0.560208801508063
Merged-chr15-57705878-4	chr15	57705765	57705965	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	11198.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	4.37498881212089	4.23013929288305	4.24336663823093	4.23523459926826	4.60841172043091	4.27253247216367	4.27012279640292	4.37290070244871	0.3146752682099	0.411850941902565	0.707206846320628
Merged-chr2-125782785-4	chr2	125782687	125782887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177608)	promoter-TSS (NM_177608)	83.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	6.97920081445629	7.02419060023051	7.19743348908809	7.29553205388385	7.51681408967485	7.32888782146404	7.21553059618591	7.00142809289059	0.201533635391214	0.327445051428896	0.638965891721937
Merged-chr16-44140645-4	chr16	44140528	44140728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028108, intron 1 of 4)	intron (NM_028108, intron 1 of 4)	819.0	NM_028108	72117.0	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding	7.96362643314197	8.09449989926726	8.09111464474636	7.82532066205236	8.07416092284285	8.20383560848963	8.00114464613796	7.92418463515288	0.0806192662190963	0.630653129264871	0.842990780994258
Merged-chr15-12117779-4	chr15	12117688	12117888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011767)	promoter-TSS (NM_011767)	-63.0	NM_011767	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	7.35316396770308	7.35072707161994	7.17436413104751	7.40552381829638	7.50390353352759	7.87750531229568	7.93891547899136	7.72649371593906	0.577879176529105	0.00201223555604701	0.023495556864152
Merged-chr4-46389330-5	chr4	46389187	46389387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347095, intron 1 of 4)	CpG	136.0	NM_029086	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	5.34415775724157	5.31101980526097	5.23121814590798	5.29887818225334	6.918665729049	6.87206873323882	6.13003796599762	6.77825948350104	2.19721130303687	9.64694816251871e-16	1.73838005888587e-13
Merged-chr16-52093551-3	chr16	52093451	52093651	+	845.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	62002.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	3.64899186458943	3.90720288253355	3.80971769432251	3.75622144683489	3.92871362431441	3.76610234457065	3.88976139982067	3.75626578912827	0.171205387188502	0.701131773997839	0.879568877516209
Merged-chr3-97202111-4	chr3	97202006	97202206	+	941.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25258.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	4.31301532343515	4.29673446900203	4.11256229865779	4.48469263867277	4.8020854592277	4.73699452537394	4.19915046095134	4.60155413223419	0.651756938130344	0.102125928614032	0.350811863834884
Merged-chr10-62215715-2	chr10	62215615	62215815	+	955.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	intron (NM_197996, intron 1 of 7)	15503.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	2.91273643427616	2.86875844464441	3.33344718045954	2.77772698184399	2.78645813422573	2.89066991213565	2.77380651630082	2.84802721072087	-0.712080856538446	0.268520513530135	0.580146289728247
Merged-chr16-90283027-4	chr16	90282876	90283076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 1 of 19)	intron (NM_001346799, intron 1 of 19)	1510.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	6.22452092948431	6.23606158026687	5.97084921769287	6.28755454906991	6.10225099021574	6.23813308720045	6.2680281673477	6.43284057073511	0.0979677284201911	0.673861621871339	0.86588980172769
Merged-chr18-67491025-4	chr18	67490946	67491146	+	951.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_176832, exon 14 of 14)	3' UTR (NM_176832, exon 14 of 14)	26197.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	4.97479521804546	4.71841695010645	5.49965524234146	5.8488861301884	4.80556728730581	4.7875598447371	4.80006133355584	5.00775223960066	-0.94980143448679	0.015425625666945	0.106969282265842
Merged-chr12-75596358-4	chr12	75596276	75596476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012024)	promoter-TSS (NM_012024)	-176.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	8.73707298858488	8.60049563592932	8.66995189254153	8.89380762928654	8.73638234972729	8.49957485349193	8.7986047873488	8.53960035573471	-0.102637340739112	0.52211146465349	0.781833715877511
Merged-chr1-151307258-4	chr1	151307161	151307361	+	833.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37225.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	3.9812170670703	3.82951000168473	4.29435767341678	4.22748165893787	3.90985599162632	4.25018994494759	4.10703002422945	3.92798280953566	-0.136398337885526	0.754997740808468	0.903542280091564
Merged-chr8-35205970-1	chr8	35205870	35206070	+	689.0	f1_c57bl6.idr	Intergenic	Intergenic	-169771.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	2.67402442750022	2.46949908935109	2.54274993930831	2.39204968874986	2.56247975266435	2.84422997235646	2.66442036103298	2.6729772657906	0.884948307591481	0.183909972576027	0.481093979545859
Merged-chr15-102470433-4	chr15	102470314	102470514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001174073)	promoter-TSS (NM_001174073)	-218.0	NM_011042	18521.0	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	8.50619831175614	8.67635825868985	8.30595443325391	8.33269020995538	8.61404526850968	8.69030654863841	8.62430444813736	8.48232237231357	0.179727062116816	0.267321621441707	0.579017883652828
Merged-chr7-39517901-4	chr7	39517756	39517956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004139)	promoter-TSS (NM_001004139)	90.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	8.23313978784607	8.32718291293659	9.11220760295098	8.35862965238751	7.92915364553	8.43014226623142	8.17170991774115	8.33728229231722	-0.418623969369244	0.0709264588958695	0.285611813631427
Merged-chr5-92486927-4	chr5	92486805	92487005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	Lx8|LINE|L1	18752.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	7.7190354855084	7.57944907431833	7.55373234436836	7.3263585983173	7.4883789944168	7.72192236455078	7.59404153407331	7.23662594233561	-0.0305442933180745	0.875478968275828	0.953217111662346
Merged-chr6-29474052-4	chr6	29473950	29474150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001145360)	TTS (NM_001145360)	2613.0	NM_001145360	668210.0	Mm.420607	NM_001145360	ENSMUSG00000090685	Gm9047	EG668210	predicted gene 9047	protein-coding	7.17036198731757	7.17199424616108	6.74099571133028	7.15609961555719	7.10256397514955	6.90346956890926	7.37510984385826	6.88283754657112	0.00867848492372233	0.968015054825723	0.98865348920078
Merged-chr3-132870280-4	chr3	132870173	132870373	+	914.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102297, intron 1 of 3)	intron (NR_102297, intron 1 of 3)	8323.0	NR_102297	101243624.0	Mm.306256	NR_102297	ENSMUSG00000106230	Gm29811	-	predicted gene, 29811	ncRNA	5.05825693833723	5.19532659543833	5.21462910004786	5.64468791344979	4.61720164232709	4.67172463929241	4.69861502576189	5.02214888927022	-1.09627435414737	0.00159401502038939	0.0196060817584753
Merged-chr14-66869739-4	chr14	66869631	66869831	+	811.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001034881, exon 1 of 1)	3' UTR (NM_001034881, exon 1 of 1)	881.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	3.73591246422649	3.499837797646	3.45245605739878	3.70431831517446	3.93036099382883	4.04782402891041	3.56008423643434	3.68228719602369	0.629655382672522	0.195652607336863	0.496467883204978
Merged-chr6-146079432-4	chr6	146079359	146079559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	145337.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	6.69017099291253	6.85996895561256	6.69134881100443	6.99831557265313	6.82177043011694	6.33365245937675	6.90248350959241	6.67138392992004	-0.170686035488985	0.446497913692614	0.732176192052232
Merged-chr14-75060732-4	chr14	75060617	75060817	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	44690.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	4.52473305484481	4.52811832187329	4.2642561037103	4.16369067878029	4.68868239524875	4.4864018198298	4.50437032622777	4.35463364704276	0.355115856445321	0.352155409228302	0.659353818166894
Merged-chr11-89006609-4	chr11	89006531	89006731	+	964.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 2 of 8)	MLT1J|LTR|ERVL-MaLR	7228.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	5.05503005151071	5.28090692168166	5.35186430669919	5.74581407402106	4.88112283889585	4.97774891163895	4.29786045314608	4.47597087885452	-1.37266630269805	0.000340580274215653	0.00562985679015233
Merged-chr8-70503196-3	chr8	70503109	70503309	+	788.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018827, intron 6 of 8)	intron (NM_018827, intron 6 of 8)	3217.0	NR_151646	66462.0	Mm.28242	NM_025577	ENSMUSG00000058833	Rex1bd	2810428I15Rik	required for excision 1-B domain containing	protein-coding	3.46981171840848	3.53832416810046	3.41151787036951	3.5448953651367	3.91299088664853	3.52528913972822	3.45743688975025	3.57831420811796	0.465503016173265	0.351594836800474	0.658910409408162
Merged-chr1-74236460-4	chr1	74236361	74236561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029711)	promoter-TSS (NM_029711)	-56.0	NM_001357387	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	7.63271074175787	8.06530650668939	7.9248462883042	7.53367167039319	7.92920738051734	7.88876857689782	7.84399803870513	7.9877129516672	0.147023931015469	0.43535756324103	0.724540235375274
Merged-chr5-123897499-4	chr5	123897403	123897603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9772.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	6.02907095478014	5.91311410379283	5.54136462922575	5.97908727155123	6.67485225040315	5.99934382375941	5.71453024354776	6.31114848699797	0.549052327146466	0.0672760276910156	0.276752029995885
Merged-chr17-34837683-4	chr17	34837562	34837762	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019442)	promoter-TSS (NM_019442)	643.0	NM_001163770	112403.0	Mm.275309	NM_033613	ENSMUSG00000040482	Dxo	Dom3z|NG6	decapping exoribonuclease	protein-coding	4.26475099783966	4.5016537479511	3.8710360539594	4.08753890866734	4.94998813462447	4.66294904805838	4.54765228643708	4.67728454266456	1.19142619230872	0.002710589905239	0.0295101068927817
Merged-chr9-89261953-4	chr9	89261848	89262048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	50564.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	7.20147185133252	7.3182027514385	7.53956343284454	7.75791197268803	6.66116521441455	7.0114721458883	7.08702734113131	6.81321468918859	-0.799384225060948	0.000250198460398634	0.00436492064037117
Merged-chr11-83687304-4	chr11	83687201	83687401	+	922.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16755.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	4.19886415957096	3.94583608469949	4.28366220039259	4.11338550523159	4.32533560588607	3.85314913030127	4.2230171622035	3.95879620258998	-0.0559548770527765	0.896554881076635	0.961155518163813
Merged-chr11-106414360-3	chr11	106414270	106414470	+	918.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023913, exon 11 of 22)	exon (NM_023913, exon 11 of 22)	-31589.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	3.70826661330743	3.42119581327211	3.76090461490614	3.62427684579208	3.8141013164938	3.88084109470836	3.69381810201205	3.99105439272209	0.644719221365001	0.163291961982314	0.452907242408881
Merged-chr4-47261321-4	chr4	47261205	47261405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 9 of 39)	intron (NM_009928, intron 9 of 39)	53293.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	8.18266671168114	8.36066860382135	8.33264048643832	8.25403558834474	8.08385647714084	8.4378893044743	8.2044961419958	8.07773047606692	-0.100614412492003	0.541094840941974	0.79305195415756
Merged-chr5-39838067-4	chr5	39837972	39838172	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-193441.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	5.29901733851881	5.29263392462639	5.06183331251166	5.86305312512366	5.45367399807902	5.04371548993057	5.472811467749	5.54852324837023	-0.0750709867993159	0.824631105978901	0.932710706845151
Merged-chr5-136908612-4	chr5	136908510	136908710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026073, intron 1 of 4)	intron (NM_026073, intron 1 of 4)	460.0	NM_026073	67286.0	Mm.41779	NM_026073	ENSMUSG00000007987	Ift22	3110017O03Rik|AI835745|AI847427|Rabl5	intraflagellar transport 22	protein-coding	6.32154140713674	6.25054274256283	5.6892497621281	5.44869668063713	5.97357840901602	6.22024383629296	5.76486900949388	5.93314582706948	0.0201837675042411	0.947827235352324	0.981348536548879
Merged-chr5-7960323-4	chr5	7960224	7960424	+	884.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054098)	promoter-TSS (NM_054098)	-148.0	NM_054098	117167.0	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	4.64212663088091	4.55212475622807	4.70974539597808	4.43438090105509	3.96454362110878	4.10815504353236	4.26891555259836	3.92205731435621	-1.26752040678806	0.00188152074641804	0.0222984957058424
Merged-chr3-121844795-3	chr3	121844687	121844887	+	793.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29485.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	3.45253455458923	3.17284046788721	3.45299999666822	3.41139912032979	3.38125015667716	3.51081811528227	3.54498028190507	3.70260905216608	0.531312756090686	0.296500131441505	0.608507761092495
Merged-chr18-12440645-2	chr18	12440551	12440751	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010680, intron 13 of 74)	intron (NM_010680, intron 13 of 74)	-63548.0	NM_001347461	16774.0	Mm.42012	NM_010680	ENSMUSG00000024421	Lama3	Lama3B|[a]3B	laminin, alpha 3	protein-coding	3.41838216598633	3.46699744325132	3.75190113135196	3.27520085946735	3.62841813477614	3.65511164367132	4.16770035069169	3.8441654392578	1.16403573336748	0.0225026385690155	0.138580663670527
Merged-chr15-89210251-3	chr15	89210138	89210338	+	971.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1321.0	NM_026813	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	4.10140927774384	4.10338321595052	4.32374064869667	4.08889027256806	4.15041998314056	4.22660220817478	4.13159439811263	4.27965770056482	0.113770551955226	0.774045208696913	0.911716359199097
Merged-chr15-95804391-4	chr15	95804280	95804480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	13537.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	6.70893093865887	6.83790352802426	6.79753114954761	6.86905833599184	7.04963055289564	6.82520630636836	6.7202432506637	6.64353234702145	0.0271801473290229	0.895201138637127	0.960764192429517
Merged-chr15-86250468-3	chr15	86250373	86250573	+	909.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 4 of 12)	intron (NM_145476, intron 4 of 12)	-27202.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	3.63591624715132	3.75289113759822	3.78488669854401	3.65364831972598	3.56053919811505	3.64188810177861	3.4564141203591	3.58076253097586	-0.462663518714008	0.330364056695883	0.641796043873533
Merged-chr9-57130639-4	chr9	57130440	57130640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028636)	promoter-TSS (NM_028636)	-237.0	NM_028636	73744.0	Mm.30110	NM_028636	ENSMUSG00000032295	Man2c1	1110025H24Rik	mannosidase, alpha, class 2C, member 1	protein-coding	4.1744387309727	4.49009222378123	4.17504263501376	4.2312554240168	4.39267540363483	4.53369943906941	4.46483093920902	4.52155023234469	0.47156929363327	0.209934864173232	0.514484230514723
Merged-chr7-122067815-2	chr7	122067715	122067915	+	953.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026140)	promoter-TSS (NM_026140)	617.0	NM_138589	28018.0	Mm.282122	NM_138589	ENSMUSG00000030870	Ubfd1	AI467302|D7Wsu105e|D7Wsu128e|Ubph	ubiquitin family domain containing 1	protein-coding	3.25234398328663	3.268825045004	3.92914321395589	3.34450003195305	3.57049811370648	3.43487157682106	3.42957196005014	3.92646833865375	0.417014831239808	0.456051554791157	0.739437212266054
Merged-chr13-76760120-1	chr13	76760020	76760220	+	652.0	f1_balb.idr	intron (NM_030174, intron 8 of 20)	intron (NM_030174, intron 8 of 20)	375159.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	2.65300061817138	2.8612658566212	2.57933592664228	2.61826205101382	2.99208840150931	3.02363876389599	3.01424348549039	2.85205085846531	1.33530567895736	0.0319951871384014	0.174753332207203
Merged-chr15-102461277-4	chr15	102461260	102461460	+	848.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025385, intron 4 of 4)	intron (NM_025385, intron 4 of 4)	2190.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	3.43460870369403	3.92383022673176	3.97743358862732	3.48991243149282	3.7602326338856	4.10120014488099	3.71878690279039	3.78428214626011	0.363927063093704	0.46323550968564	0.74463957416247
Merged-chr1-34855850-4	chr1	34855745	34855945	+	959.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357425, intron 2 of 8)	(TTTTG)n|Simple_repeat|Simple_repeat	5856.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	4.03525458360577	3.7355757728211	3.87376071502412	4.12465145042312	4.68304051319962	4.21132427510606	4.36858111491725	4.17752097584018	1.05261654309356	0.0157926230415321	0.108786860974282
Merged-chr7-80180656-4	chr7	80180549	80180749	+	934.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6192.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	5.08626348519178	4.76567241418523	4.60837451498058	4.58578506753531	5.23562852399757	5.19571798981324	4.82843130559859	4.77234982055017	0.531417954271367	0.130633976946998	0.40230155519017
Merged-chr17-71002240-1	chr17	71002140	71002340	+	1000.0	f0_c57.idr	5' UTR (NM_026064, exon 1 of 4)	5' UTR (NM_026064, exon 1 of 4)	293.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	6.7720192637692	7.14706919951637	6.53737623765054	6.85886964107323	7.32713735948071	7.65078567494528	7.34629636491066	7.34923502042336	0.77552975518809	0.000258736818929966	0.00449604137207154
Merged-chr2-166155611-4	chr2	166155498	166155698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028072)	promoter-TSS (NM_028072)	85.0	NM_001252579	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	5.39137167395517	5.64340110654329	5.06423484998309	5.24034833831749	5.27510197423276	5.34888871819738	5.66976631396253	5.4450696630733	0.157345128625352	0.60393804836342	0.828350269166784
Merged-chr11-104440692-4	chr11	104440586	104440786	+	809.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 2 of 14)	intron (NM_001359634, intron 2 of 14)	1605.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	3.53751883762742	3.9201040016012	3.47328785696126	3.73905473454228	4.17112289933103	4.08898598557978	3.75427011474657	3.9173579723496	0.876554862258878	0.0655172178305423	0.272466432823429
Merged-chr14-16457308-3	chr14	16457198	16457398	+	952.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289760, intron 5 of 9)	intron (NM_001289760, intron 5 of 9)	92092.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	4.48206583844383	4.17973892979331	4.4039216297921	4.64556757052675	3.98718483989623	4.20688491917312	4.21135181985373	4.31707989255703	-0.662783362444572	0.102455298148727	0.351572369808042
Merged-chr2-170355122-3	chr2	170355024	170355224	+	888.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029815, intron 11 of 12)	MLT1B|LTR|ERVL-MaLR	-1237.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	3.31957623105826	3.15638454687541	3.48181056813224	3.56664775712593	3.34148348485216	3.31012299100092	3.36324087969541	3.25958575203216	-0.283784812205332	0.596673108213505	0.824895994435945
Merged-chr1-171388531-4	chr1	171388413	171388613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005508)	promoter-TSS (NM_001005508)	-447.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	6.44967630119861	6.71827140823976	5.9692021404166	6.25464795873357	6.51575270662718	6.72202068696027	6.14016717029163	6.03603456789538	0.0125622435677	0.963871919254916	0.987183337648521
Merged-chr17-6079811-4	chr17	6079689	6079889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181392)	promoter-TSS (NM_181392)	-39.0	NM_181392	66467.0	Mm.303441	NM_181392	ENSMUSG00000034345	Gtf2h5	2700017P07Rik|2810432H05Rik|D17Wsu155e	general transcription factor IIH, polypeptide 5	protein-coding	7.55609456129206	7.24626176975169	7.41499210858152	7.29837161621547	7.7357962646522	7.78735158470153	7.62314053150513	7.95492480896239	0.531363902125346	0.00309808637623817	0.0327738065173026
Merged-chr2-90488429-3	chr2	90488332	90488532	+	924.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	B3|SINE|B2	-9258.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.13709163046902	2.98028357273651	3.06621750882981	3.01648855475137	3.62713456664812	3.56609329362985	3.80805034746153	3.73971378667652	2.26763220981903	1.92171770666541e-05	0.000490799944896795
Merged-chr5-125352048-4	chr5	125351966	125352166	+	991.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10972.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	4.92041965471928	5.19770905450682	4.95946603804814	4.83765000064225	5.42715842866286	5.40342835825951	5.37396630109739	5.2267422022797	0.719197948661776	0.0161018877009937	0.110132294185963
Merged-chr14-105483145-4	chr14	105483044	105483244	+	858.4458619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15644.0	NR_045921	74864.0	Mm.159344	NR_045921	ENSMUSG00000022116	4930449E01Rik	-	RIKEN cDNA 4930449E01 gene	ncRNA	4.33714642103769	4.07715927391426	4.33782025091836	4.21655561076322	4.3920224629962	4.22528578959302	4.4413067306853	4.64216537811009	0.458123803148359	0.23378618245458	0.543492448306542
Merged-chr3-132684051-4	chr3	132683912	132684112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163455)	promoter-TSS (NM_001163455)	-132.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	6.85388270036017	6.89250405140164	7.57252634432164	6.7796544396408	6.91390775450669	7.12670652315244	6.97777910392942	6.87798291266685	-0.114611858703125	0.635715762249056	0.845870456193819
Merged-chr4-135981115-3	chr4	135980986	135981186	+	863.4722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025411, intron 3 of 5)	L1MA5|LINE|L1	6158.0	NM_025411	66193.0	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	3.45010456929581	3.60475425540264	3.61479124632018	3.24368886582279	3.49135284723652	3.67978292644495	3.43759675316575	3.711374239249	0.350348286856179	0.488990862631806	0.761571656414145
Merged-chr16-4268106-4	chr16	4267992	4268192	+	849.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	38863.0	NR_003628	436332.0	Mm.478141	NM_001013830	ENSMUSG00000089645	Gm5766	EG436332	ribosomal protein L7a pseudogene	pseudo	3.17131173783259	3.48151425400701	3.81204524560121	2.96796140083742	3.35059438286399	3.41855451468454	3.66239123109062	3.41974153861133	0.244911344517096	0.676979876481539	0.867354572468851
Merged-chr10-14210246-4	chr10	14210140	14210340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	243861.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	6.04879676329645	5.94428027813787	5.91994072670212	6.06128690847964	6.16239855396392	5.84637172258957	5.97737649554934	5.74525341783608	-0.0705063051634185	0.776135088312461	0.912749878378878
Merged-chr11-22928996-4	chr11	22928837	22929037	+	947.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361661, intron 2 of 2)	MTE2b|LTR|ERVL-MaLR	-43068.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	4.61479489689433	4.602867332606	5.27596576742308	5.26444427233076	4.50438211529284	4.56307843611582	4.79251475069426	4.91877609012282	-0.590578511884539	0.128226235635932	0.398474045792615
Merged-chr4-126022644-2	chr4	126022544	126022744	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2015.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	3.3125922183932	3.13570277412638	2.77885111895819	2.684803481	3.63529196682086	3.18557197620057	3.35244337236185	3.41671663907453	1.5685752938873	0.013492169726541	0.0974983907579151
Merged-chr15-81027806-4	chr15	81027673	81027873	+	882.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 3 of 13)	intron (NM_001082536, intron 3 of 13)	50008.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	3.50461611153998	3.65428672671403	3.38550248581968	3.73698035935338	3.88256950221695	3.4985042768239	3.60019668755648	3.55906631151465	0.201734666306243	0.689027748333223	0.873078401014891
Merged-chr1-152768257-4	chr1	152768147	152768347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026369, intron 1 of 3)	intron (NM_026369, intron 1 of 3)	1705.0	NM_026369	67771.0	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	5.86325210819056	6.2822047770226	5.29603006152425	6.03827537960839	6.09692203669301	6.31977712752949	6.17026275665461	5.95334151127234	0.328744494369194	0.262306899106166	0.574184293693129
Merged-chr5-74820556-1	chr5	74820456	74820656	+	779.0	f0_balb.idr	Intergenic	Intergenic	-117653.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	3.29126536946444	3.05884894610113	3.53584489597971	3.93649152465453	2.59670710245353	2.71863742402805	2.68606470729393	2.84826175158812	-4.43375209302618	7.35995446353632e-06	0.000209640954609985
Merged-chr16-78200280-4	chr16	78200181	78200381	+	951.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55173.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	4.84321735375407	4.91951871747154	4.97927994550298	4.97407140849857	4.67357388320465	4.55722613443592	4.67088826199003	4.80461867432657	-0.526217159692575	0.111264756574914	0.368564506154404
Merged-chr11-114913070-4	chr11	114912958	114913158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21328.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	7.20391310064903	7.314514930025	7.40308258597415	7.27785433463294	7.19887013500042	7.52071597648409	7.07576353249802	7.44519283069579	0.0222583468786675	0.907630034410393	0.96572638861679
Merged-chr10-44704348-4	chr10	44704265	44704465	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-245617.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	5.50476127106646	5.44041096546192	5.26388791843297	5.4913111441103	5.76958798589577	5.50502574860036	5.60782408651935	5.50185898545906	0.301340662250241	0.2683037082698	0.580085950152971
Merged-chr13-92484023-4	chr13	92483944	92484144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163627)	promoter-TSS (NM_001163627)	-13.0	NM_001163627	73942.0	Mm.85935	NM_001163627	ENSMUSG00000034334	Fam151b	4930405M20Rik	family with sequence similarity 151, member B	protein-coding	6.93968919157461	6.93495459814396	6.47068805708421	6.91558699350656	7.01194557858512	7.0253537910543	6.68589111137873	6.73030623666875	0.0560605689405731	0.798253319640098	0.921955533143952
Merged-chr13-5920573-3	chr13	5920464	5920664	+	863.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	59075.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	3.52139355345404	3.55480399816244	3.52182615334824	4.02975901914967	4.18284273027415	3.51041833294602	3.7268427213069	3.63474428092465	0.317984057696524	0.558823588898927	0.803387211614322
Merged-chr9-21926943-4	chr9	21926834	21927034	+	994.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164614)	promoter-TSS (NM_001164614)	354.0	NM_001253869	235043.0	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	5.3059512719446	5.61796224750486	5.27619511502102	5.66485973290678	5.36647083662103	5.17915868773313	5.21901184611897	4.9969703121814	-0.516745384417092	0.0889103482704888	0.325381910896163
Merged-chr11-106999059-2	chr11	106998959	106999159	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010655, intron 1 of 10)	intron (NM_010655, intron 1 of 10)	466.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	3.11240852311271	3.37715275518366	3.46711757704679	3.03902399617394	3.38378046761343	3.58367154787056	3.28940063122941	3.35746269634063	0.554725058598475	0.308371300465102	0.620780609644366
Merged-chr1-166002326-1	chr1	166002226	166002426	+	951.0	f0_balb.idr	intron (NM_198932, intron 1 of 15)	CpG	308.0	NM_011137	18986.0	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	4.51515177961755	4.0829470387678	4.73394996910193	4.10686099920451	4.79249039948113	4.47625917648174	4.37102635063468	4.29768408669594	0.301794800620061	0.47505118157817	0.752066636719659
Merged-chr11-5445659-4	chr11	5445531	5445731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080924)	promoter-TSS (NM_001080924)	-784.0	NM_001080924	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	6.66968223777124	6.56388769888907	6.70011015016744	6.67970462118289	6.52784821939126	6.68965365164382	6.42901371129015	6.43981435584299	-0.189715135011555	0.357977168460327	0.66403775862185
Merged-chr4-57947765-1	chr4	57947665	57947865	+	1000.0	f0_c57.idr	intron (NM_011660, intron 3 of 4)	intron (NM_011660, intron 3 of 4)	8646.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	5.32315747597211	5.55078734347625	5.29290896328749	5.51097115056012	5.39462710596862	5.4679790388954	5.49582597795902	5.40964180053117	0.00838073399490413	0.975775143086921	0.991347073148764
Merged-chr14-122464746-6	chr14	122464792	122464992	+	882.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022987, exon 1 of 2)	exon (NM_022987, exon 1 of 2)	766.0	NM_022987	65100.0	Mm.390761	NM_022987	ENSMUSG00000041703	Zic5	1700049L20Rik|Opr	zinc finger protein of the cerebellum 5	protein-coding	3.00478982825138	3.45015925878578	3.21167524609352	3.30619456498201	3.66370862032827	3.66494582800961	3.37751214787072	3.2724859109084	0.860003702302568	0.121182660798231	0.385429796688657
Merged-chr3-52756402-4	chr3	52756283	52756483	+	970.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038079, intron 1 of 3)	intron (NR_038079, intron 1 of 3)	16659.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	4.75913898200474	5.33465075568054	5.09131453384833	5.02707888817104	5.53815932626415	5.5317784891852	5.79492859830369	5.88109728550286	1.09418752758717	0.00028461201422992	0.00485929444971731
Merged-chr4-41275048-1	chr4	41274948	41275148	+	1000.0	f0_balb.idr	promoter-TSS (NM_026872)	promoter-TSS (NM_026872)	87.0	NM_026872	68926.0	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	5.35898378023315	5.50418891851608	5.38738376471028	4.96890132528741	5.15055809707769	5.11316151735091	4.87271038896544	5.20916104617702	-0.392727468314755	0.22391872107736	0.532092897361468
Merged-chr18-4337260-3	chr18	4337157	4337357	+	736.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 5 of 7)	intron (NM_007746, intron 5 of 7)	15696.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	3.93926711387394	3.371951751932	3.80598581188072	3.81835614135075	3.92460760699143	3.47433144800393	3.53227317859033	3.42314618874265	-0.411141468994116	0.440419791833888	0.727848125054536
Merged-chr9-44230277-1	chr9	44230177	44230377	+	1000.0	f1_c57bl6.idr	intron (NM_007619, intron 1 of 15)	intron (NM_007619, intron 1 of 15)	3769.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	3.52303922294452	3.20020846806629	3.21307407127549	3.04157417447736	3.38253705653193	2.91307858512895	3.01499832165625	3.3758744710673	-0.212896614866294	0.725807194042141	0.890921883682774
Merged-chr19-56703241-4	chr19	56703136	56703336	+	977.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19136.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	5.11132676518312	4.69376170959055	5.17312482480911	5.07086417892684	4.99793423864989	5.04720898578315	4.95669283824723	4.9061915204055	-0.09026276279786	0.779220698492132	0.913841690258744
Merged-chr8-79475328-3	chr8	79475234	79475434	+	825.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-75866.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	3.83918590848845	3.90390893922691	3.88477699179564	4.08729949177019	3.37023488284959	3.23967985145322	3.39671075146077	3.40672648679231	-1.96346143244022	0.000182759581679201	0.00337186217323583
Merged-chr1-131432100-4	chr1	131432007	131432207	+	905.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 3 of 22)	intron (NM_001081011, intron 3 of 22)	95254.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	4.53741458516197	4.76064555042136	4.41416788189096	4.4298567876496	4.28206824579441	4.13657212878774	4.47740074465391	4.64794427323865	-0.324578729195857	0.404017407740049	0.701206012163242
Merged-chr17-73067640-4	chr17	73067543	73067743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40342.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	6.17129977605539	5.65852927821882	6.30097324148225	6.50103777764676	5.79489701767684	5.96994240662737	6.33617034444525	5.86336616122125	-0.308610263252556	0.289007197203226	0.600971174108339
Merged-chr7-45590039-4	chr7	45589943	45590143	+	817.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009737)	TTS (NM_009737)	-14867.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	3.71473764220125	3.42901505567436	3.43054991813583	3.54682016957184	4.10910440022115	3.78168076267588	3.59458376598945	3.763189945471	0.9087674764564	0.0616516796403839	0.262709938351119
Merged-chr3-65930807-2	chr3	65930731	65930931	+	891.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	27418.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	3.97932815943181	3.68757589011537	3.88508801393243	3.46020810522042	4.06527745043757	3.79111638585646	3.86847900061931	4.02228450128247	0.558055092385185	0.233679709859818	0.543405144503642
Merged-chr19-7496358-4	chr19	7496252	7496452	+	687.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146091, intron 1 of 12)	B2_Mm1a|SINE|B2	1914.0	NM_146091	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	3.9541748822202	3.51473403017273	3.85906106312163	3.34260994660445	4.06425711724721	3.93051383631851	3.74030961155577	4.04119672193999	0.801652681231987	0.102763771036219	0.352104672118372
Merged-chr11-44380853-4	chr11	44380644	44380844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-19319.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	4.14721071365118	3.84160907404803	4.32654361157803	3.55034161706821	4.36670687989819	4.12244036683925	4.38613069907771	4.65184030678623	1.02696163525676	0.0254697583028405	0.150424155844497
Merged-chr11-80175549-4	chr11	80175462	80175662	+	792.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 8 of 10)	intron (NM_172133, intron 8 of 10)	-8310.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	4.23470743724749	4.08990653118269	3.85314322963903	3.63687803021516	4.11452357189008	3.79657942623053	4.4393751458852	4.10239500088768	0.450264349074319	0.335117892261015	0.645470341043074
Merged-chr1-78709333-1	chr1	78709233	78709433	+	794.75	f0_balb.idr	Intergenic	Intergenic	50893.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	3.42951164821712	3.51520617205709	3.82134757993743	3.55834875554994	2.96409625585557	3.17584617134982	3.12598400327031	3.19781121025808	-1.9330322386771	0.00103132025999661	0.0137842325897571
Merged-chr13-98867438-4	chr13	98867379	98867579	+	821.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 7 of 23)	intron (NM_178716, intron 7 of 23)	23563.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	3.74541950533142	3.60818923360052	3.74593722561222	3.88589231904038	3.74409242676773	3.91701630328254	3.78190085614981	3.89252155335301	0.209217633959312	0.644186810084147	0.850113520495754
Merged-chr1-78484618-3	chr1	78484509	78484709	+	941.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001278075, intron 1 of 17)	MLT1F2|LTR|ERVL-MaLR	4288.0	NR_102758	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	3.91502242566509	4.18111325397129	3.96233167094462	3.8058718768307	3.40500838404875	3.98940119659262	3.69510169625348	3.59146163892553	-0.861813650451514	0.079760590952935	0.305790351785
Merged-chr16-90916278-4	chr16	90916149	90916349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18600.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	6.63439052130025	6.89763209459761	6.76667333608237	6.73157818423988	6.43497063022305	6.68308049285511	6.69019529460872	6.10569824447196	-0.382384969551235	0.0934549454372356	0.334349554090817
Merged-chr4-151988931-4	chr4	151988801	151989001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145929)	promoter-TSS (NM_001145929)	85.0	NM_175152	69876.0	Mm.226820	NM_175152	ENSMUSG00000039759	Thap3	2010013E08Rik|2210418H06Rik	THAP domain containing, apoptosis associated protein 3	protein-coding	5.96179826014755	5.38620617059072	5.77138059656917	5.62878453666181	5.54071476748833	5.51413882918725	5.54434269180395	5.45595871456854	-0.304100950182803	0.275554516942709	0.587365793297842
Merged-chr8-69399499-4	chr8	69399413	69399613	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3969.0	NR_038043	378466.0	Mm.37846	NM_194351	ENSMUSG00000110444	Gm10033	9330175B10Rik|Gm10311	predicted gene 10033	ncRNA	4.861411014784	4.57987282328249	4.54708733344307	4.60717126637909	4.77203689709576	5.06758970039789	4.80366434050435	4.92680940164432	0.502136840966986	0.135743688019813	0.410143043733825
Merged-chr10-70214503-4	chr10	70214334	70214534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304739, intron 1 of 2)	intron (NM_001304739, intron 1 of 2)	9770.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	4.49445224481601	4.50426880184291	4.92410970478475	4.6357939313444	4.81972308630655	4.62784097701489	5.08275425194481	4.98518815521657	0.500881862501999	0.153390838860514	0.438024814220194
Merged-chr18-50130601-4	chr18	50130515	50130715	+	826.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008292, intron 2 of 23)	intron (NM_008292, intron 2 of 23)	2414.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	4.15078795824193	3.18163146340131	3.72470759544305	3.77276095587565	4.0658004747795	4.14956949711276	3.70989469513043	3.97653660935307	0.652905482474176	0.237623230666982	0.547779380627817
Merged-chr12-3808440-4	chr12	3808413	3808613	+	858.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	1353.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	3.26728277051856	3.87162415209009	3.93069548162106	3.47025983896147	3.25018241496515	3.86622275751921	3.57070646723049	3.88415764652114	0.0150688780044682	0.978645702272317	0.992491699798269
Merged-chr1-120527726-4	chr1	120527612	120527812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-22688.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	5.93577222657232	6.17766813526454	6.55336829400245	5.43423255250661	6.87149970641938	6.82079200483705	7.09884385760367	6.39829376500515	1.09653806966131	0.000276409749207136	0.00474434898904349
Merged-chr1-155140262-4	chr1	155140182	155140382	+	838.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008209, intron 1 of 5)	intron (NM_008209, intron 1 of 5)	6532.0	NM_001355063	15064.0	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	3.85123978001123	3.8416390750405	3.90310910185482	4.09452466140778	3.9183399614431	4.07406732993762	3.98279269202192	3.90086624072594	0.0753740800814061	0.861714120417355	0.947809474991843
Merged-chr18-23874275-4	chr18	23874187	23874387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	70317.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	6.28181243573803	6.2685901821056	6.28292452362361	6.21827445290719	6.39541041272264	6.61511216773011	6.26916792137505	5.86282375621619	0.0816401073272227	0.740522085136127	0.897949258908081
Merged-chr6-115765309-2	chr6	115765209	115765409	+	927.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCAA)n|Simple_repeat|Simple_repeat	-2843.0	NM_001168256	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	2.50493270185758	2.30636009036715	2.35833869176067	2.36683134954981	2.63366258905402	2.68021148495198	2.85456428118816	2.75629075812417	1.85099327559321	0.00702540529432541	0.0610128505911162
Merged-chr2-22811013-4	chr2	22810912	22811112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	36685.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	6.05172359801066	6.09965720816483	6.30897973640118	5.90312567644268	5.66768122167617	5.85467343158709	5.89430471070962	5.55877829653975	-0.5468573071349	0.034299518276312	0.183041341384736
Merged-chr1-181015679-4	chr1	181015560	181015760	+	935.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010145, intron 1 of 8)	intron (NM_010145, intron 1 of 8)	1909.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	4.8410581405952	4.59364716821082	5.35186857146743	4.81918392373283	4.63969320327849	4.68727663730098	4.9241640717089	5.07404626005326	-0.170566674899337	0.643718579780089	0.849889538324807
Merged-chr11-107229154-3	chr11	107229041	107229241	+	966.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 7 of 9)	B4A|SINE|B4	-39760.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	3.40004691390122	3.17617333288919	3.77029677068342	3.63394683943435	3.43956201585322	3.57646693728332	3.44717929527738	3.89815461059674	0.268355364297592	0.620118147453157	0.837083057416428
Merged-chr1-184067130-4	chr1	184067026	184067226	+	880.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	32745.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	3.66761489449905	3.59728623546931	4.03166164307824	4.36868986378794	4.02466370002322	3.90265988874353	3.76794559227863	4.02917226172124	-0.0953701058616802	0.849808271284792	0.943287725008123
Merged-chr16-95702488-4	chr16	95702388	95702588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011809)	promoter-TSS (NM_011809)	81.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	7.95750650640908	8.46188050997196	8.21366563592251	7.69911555407613	8.28099008194389	8.48268328690358	8.54901481392587	8.06436121185988	0.31465059649409	0.141800276269055	0.418978906789336
Merged-chr11-100826790-4	chr11	100826685	100826885	+	671.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	-4215.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	3.79658431007055	3.65143604794137	3.57445326891852	3.71867575370667	3.74296191567233	3.69258756122448	3.87861648367251	4.2598907543945	0.638593248303172	0.175103069962551	0.469831987288867
Merged-chr18-67826197-4	chr18	67826100	67826300	+	895.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027556, intron 14 of 45)	intron (NM_027556, intron 14 of 45)	26093.0	NM_027556	70799.0	Mm.30857	NM_027556	ENSMUSG00000024542	Cep192	4631422C13Rik|D430014P18Rik	centrosomal protein 192	protein-coding	3.88126814171985	3.88621873516143	3.62358771164268	3.62750451543933	4.65279856482036	4.54453653945865	4.53807200193108	4.65901200918731	2.14923170448873	8.71388727362048e-08	3.77049107750172e-06
Merged-chr15-50361959-4	chr15	50361849	50362049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	527100.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	5.29365873065401	5.7093560278597	6.01403493862737	5.99574757367085	5.50742350988946	5.29815184297693	5.20064903831017	5.63906097965848	-0.623275275330166	0.0433054880250132	0.21166741938762
Merged-chr4-122858131-4	chr4	122858099	122858299	+	738.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001358036)	TTS (NM_001358036)	21972.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	3.16856834460291	3.24044992072577	3.29544319661651	3.68607822965363	3.34333056965814	3.52471636344874	3.39767450166147	3.51468851758395	0.210606057037466	0.704750323686698	0.881405360632816
Merged-chr2-167958992-4	chr2	167958896	167959096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	26669.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	6.84503254332463	6.78895812585842	6.30907231484202	6.93599521080606	6.5165570748382	6.07648616738711	6.57239083173346	6.55387609686857	-0.435636884309434	0.0754439476486776	0.296604515309872
Merged-chr5-65391484-4	chr5	65391371	65391571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011292)	promoter-TSS (NM_011292)	-26.0	NM_024471	79464.0	Mm.195776	NM_024471	ENSMUSG00000029199	Lias	2900022L22Rik|4933425M12Rik|7a5ex|C77512|LS|lip-syn	lipoic acid synthetase	protein-coding	7.52012194673178	7.59978546442644	7.416898757039	7.19887625477249	7.37097851462042	7.86855724818033	7.32973876448045	7.74832744981228	0.21153745823005	0.311792510936963	0.623665218229603
Merged-chr6-83077869-1	chr6	83077769	83077969	+	591.0	f0_balb.idr	promoter-TSS (NM_197992)	promoter-TSS (NM_197992)	-521.0	NM_197992	69837.0	Mm.12261	NM_197992	ENSMUSG00000069678	Pcgf1	2010002K04Rik|AU024121|Nspc1	polycomb group ring finger 1	protein-coding	4.00210576163087	4.04616990565205	4.45290080576592	3.98931880792859	3.73469641272867	3.91154468420527	3.77521263155686	4.26524730465109	-0.525604747728231	0.255441435215227	0.566984717387572
Merged-chr9-44480316-4	chr9	44480191	44480391	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2534.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	5.04270155513252	4.93871110351407	4.8568030422101	4.86532583300462	5.13314270681917	5.1486823243429	5.37693310526466	5.59343012523785	0.751995414433667	0.0152799573342798	0.106253622811323
Merged-chr14-56811892-4	chr14	56811798	56811998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253753)	promoter-TSS (NM_001253753)	-91.0	NR_152252	100503842.0	Mm.297636	NR_152252	ENSMUSG00000100017	2410022M11Rik	-	RIKEN cDNA 2410022M11 gene	ncRNA	7.86668495204884	7.94671304923832	8.2120253622393	7.11482738056103	8.08603143201738	8.41792365397896	8.16745394015522	7.76966813190521	0.376509692664316	0.135873479498528	0.410254449699913
Merged-chr2-177956923-2	chr2	177956823	177957023	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190302, intron 1 of 4)	RMER17B|LTR|ERVK	365.0	NM_001282028	665211.0	Mm.441314	NM_001190302	ENSMUSG00000078862	Gm14326	-	predicted gene 14326	protein-coding	4.44244602098076	4.10171700680419	4.32796046223211	3.55969200404124	3.93269981221676	4.02759162454529	4.18196638488315	4.32508640092216	-0.0460135888102996	0.924117997202125	0.971908493370914
Merged-chr16-87635564-4	chr16	87635456	87635656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63398.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	6.44080071784087	6.40327089955281	6.27415127311919	5.8070339127006	6.18252412042421	6.21392602529158	5.77064426922165	5.68717853947217	-0.390507063816918	0.170711676650667	0.463921931697421
Merged-chr11-117846965-2	chr11	117846865	117847065	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2272.0	NM_001012273	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	3.3385035577679	3.30365189691045	3.16291610034325	2.88413332188237	3.01411952949155	3.277404793532	3.08800626179607	3.7132551896676	0.44480772493033	0.463784515101366	0.744988576808808
Merged-chr2-117080554-4	chr2	117080453	117080653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40518.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	6.7817349823407	6.97664100987865	6.99509179877035	5.72232094240824	6.68044208429689	6.8306919225091	6.39009861926121	6.2649109278424	-0.206858178028434	0.518919705548194	0.779770852077667
Merged-chr1-43091881-4	chr1	43091774	43091974	+	805.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013025, intron 2 of 12)	intron (NM_001013025, intron 2 of 12)	612.0	NM_001357299	73122.0	Mm.246069	NM_001013025	ENSMUSG00000070939	Tgfbrap1	3110018K12Rik|AU024090|AU042859|AW742551|Trap1	transforming growth factor, beta receptor associated protein 1	protein-coding	3.98651192418656	4.00247604223978	4.45225781323573	3.80965653668804	3.91359152258912	4.11135710694678	4.06744558491562	4.25896490682596	0.0442376339148825	0.921167115670696	0.970784473524592
Merged-chr18-38367425-4	chr18	38367316	38367516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28423.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	6.97492180381373	6.61428586636093	6.4242397679986	6.70390640868493	6.66274860368199	6.54617484295887	6.8809455855937	6.28522395226281	-0.11483444916776	0.628382213840028	0.841503943387255
Merged-chr11-120098818-4	chr11	120098718	120098918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110242)	promoter-TSS (NM_001110242)	-87.0	NM_183137	78777.0	Mm.23672	NM_183137	ENSMUSG00000025377	Tepsin	2410002I01Rik|Enthd2	TEPSIN, adaptor related protein complex 4 accessory protein	protein-coding	8.41720816161003	8.56756584154629	8.26191817770967	8.23164355585879	8.32276924427113	8.37453490832699	8.14632266154414	8.07798785962055	-0.174146068635816	0.303868410470032	0.616581133693845
Merged-chr2-157007055-4	chr2	157006964	157007164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025853)	promoter-TSS (NM_025853)	11.0	NM_025853	66934.0	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	7.13958933307741	7.29561559504541	6.57675534434016	6.65430823158609	7.24340870214925	7.27207640595525	6.70498302586122	6.74968342113469	0.102318111199629	0.694437284785614	0.87596715638729
Merged-chr4-139201777-5	chr4	139201684	139201884	+	833.919983	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	7673.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	2.70451564591656	2.63503019151466	2.77527282391103	2.68559853139814	3.12656665960081	2.95139428204098	3.21890557970309	3.02333308910967	1.71508666783468	0.00467925391387692	0.0452349061979961
Merged-chr2-91650617-2	chr2	91650517	91650717	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033451)	promoter-TSS (NM_001033451)	499.0	NR_027371	228359.0	Mm.22413	NM_146124	ENSMUSG00000027247	Arhgap1	B230365D05Rik|C76222|Cdc42GAP|p50rhoGAP	Rho GTPase activating protein 1	protein-coding	3.29835652187501	3.34850464176609	3.18792134692333	3.42401714826104	2.95266922504033	2.89072945849905	3.05646600013187	3.2428094344812	-1.13512496907514	0.0530818675294602	0.240274356049567
Merged-chr1-63113089-4	chr1	63112988	63113188	+	828.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114609, intron 1 of 11)	intron (NM_001114609, intron 1 of 11)	1179.0	NM_001081436	227195.0	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584	INO80 complex subunit D	protein-coding	3.71089953378088	3.86464302453591	3.90873150343828	3.3767056314807	3.73958617111534	3.71839575310731	3.84529571484114	3.76147166348584	0.145517646661708	0.764688588430687	0.907812114625849
Merged-chr7-4493040-4	chr7	4492964	4493164	+	964.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029834, intron 3 of 21)	intron (NM_029834, intron 3 of 21)	8616.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	5.23839553831167	4.76520429492412	5.44581263448312	5.46420304687314	4.69667561207577	4.41801319969217	5.06493849450679	4.49608718643066	-1.11827287465725	0.00337528863913178	0.0350272089995876
Merged-chr5-130254458-4	chr5	130254363	130254563	+	929.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023248, intron 1 of 4)	intron (NM_023248, intron 1 of 4)	1067.0	NM_023248	66711.0	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	SBDS ribosome maturation factor	protein-coding	4.25323785505553	4.55149928979681	4.20413843032195	4.00087348688623	4.59713999453853	4.76599012425519	4.77816461401203	4.25129677846483	0.817222082049748	0.0419293797135932	0.207461709473065
Merged-chr1-132355944-4	chr1	132355824	132356024	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001311108)	TTS (NM_001311108)	12024.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	5.07227763139555	4.75730422516114	4.56344311050423	4.67638860327946	4.51282633509445	4.65302934068302	4.36524480492447	4.56052417146601	-0.543043068261064	0.136132999777717	0.410585203016023
Merged-chr4-63568124-4	chr4	63568037	63568237	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144905, intron 4 of 9)	MIRb|SINE|MIR	7910.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	4.31087563737448	4.17550184614034	4.6283085606493	4.80701841923197	4.50614765279148	4.13414246762586	4.3361842628948	4.00719193733913	-0.579328487570978	0.180782036210103	0.477189221812612
Merged-chr10-24151450-4	chr10	24151333	24151533	+	973.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 1 of 9)	intron (NM_016797, intron 1 of 9)	2116.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	4.96257785460515	5.05821874725796	4.89027288933757	5.02681910023633	5.33835553147229	4.82252891682674	5.00819183377745	5.12617794291392	0.213778179572769	0.50399626829332	0.770604480502872
Merged-chr11-98754890-4	chr11	98754801	98755001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178060, intron 2 of 8)	intron (NM_178060, intron 2 of 8)	13116.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	6.05873823299787	6.07437428105213	5.75734507106404	5.06577789071232	5.89752316259061	5.90828190214292	5.5456030198538	5.56980351975272	-0.0720737348073981	0.82993153040021	0.934690278259685
Merged-chr8-22808622-4	chr8	22808518	22808718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2964.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	6.68563023073026	6.75761341343521	6.70200692919176	6.63587581314122	7.11666794895639	6.96575183654216	6.68282567746875	6.69723691704181	0.275608982732507	0.190659786806059	0.490015272253781
Merged-chr8-122906613-4	chr8	122906545	122906745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037865, intron 4 of 13)	intron (NR_037865, intron 4 of 13)	58271.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	5.80641880884232	5.7622544786947	6.08845656261926	5.80005657638862	5.81457292703561	6.16138006364111	5.77794184465345	5.64912590558027	-0.00650276260433139	0.980235922496489	0.99281244474172
Merged-chr10-84576503-4	chr10	84576285	84576485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146008)	promoter-TSS (NM_146008)	-562.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	6.32983741768168	6.20422928652988	6.21858765954293	5.82710560566276	6.07297756057693	6.68842459116469	6.12682581613734	6.56969728766504	0.362118629968224	0.176842580663287	0.472077634602165
Merged-chr14-103363322-4	chr14	103363232	103363432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16532.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	5.44580802730936	4.99953896403705	5.41880259280603	5.42832124417035	5.52859767213593	5.61978846683312	5.3046222325138	5.29672915766788	0.190842099345625	0.519685642772978	0.780280082524181
Merged-chr10-44219266-4	chr10	44219161	44219361	+	825.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_001582, exon 7 of 7)	non-coding (NR_001582, exon 7 of 7)	3836.0	NR_027506	70365.0	Mm.87073	NR_001582	ENSMUSG00000091358	Speer5-ps1	1700007C10Rik|SPEER-5|Speer5-ps	spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1	pseudo	3.86256115470872	4.1607992186797	3.75766403648224	3.73100791266505	3.97883140477536	3.69919048870908	3.94344193356426	3.95818721859637	0.0539803539573399	0.90557469074149	0.964916319169902
Merged-chr5-143518355-4	chr5	143518258	143518458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347530, intron 1 of 6)	intron (NM_001347530, intron 1 of 6)	9635.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	6.55403779859083	6.9204770108941	6.78809113787546	6.52169034612971	6.32061608605198	6.74705603281198	6.15456122244989	6.11595784248528	-0.506223916973355	0.0407072084550048	0.203962645600499
Merged-chr10-120815451-4	chr10	120815318	120815518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 5 of 6)	intron (NM_177092, intron 5 of 6)	-42211.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	5.08652249806262	5.56269747137936	5.65252560069519	5.7268164171849	4.86232062653708	5.15559420469722	5.19656196124682	5.01086339135708	-0.890870456048403	0.0050662254254522	0.0479683321094743
Merged-chr16-91607180-4	chr16	91607061	91607261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9481.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	7.63583604414843	7.75446921818906	7.45646042574999	7.53094672756017	7.60044949519021	7.54306770177908	7.57429884037142	7.57158364158439	-0.0318427525564121	0.852544958387415	0.944575331440412
Merged-chr3-41905824-4	chr3	41905736	41905936	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	163218.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	5.92754575918256	5.97183419783505	6.71400863988835	6.82941776605785	4.97500251611527	5.14226797874556	5.6810906500241	5.23636950255913	-1.8793121473201	4.03921854969824e-08	1.89876250004809e-06
Merged-chr11-120573856-2	chr11	120573756	120573956	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011032)	promoter-TSS (NM_011032)	-603.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	5.06638626604079	4.94355840001404	5.03631838696948	4.9223289677781	4.65412574524484	4.85240014935573	4.52523995768961	4.79223855505487	-0.575934831559994	0.0820317262918231	0.31095897375364
Merged-chr3-146592828-4	chr3	146592703	146592903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019957, intron 3 of 6)	intron (NM_019957, intron 3 of 6)	-4346.0	NM_009474	22262.0	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	6.93260809920336	6.93044065030137	6.34834527786835	6.7077556744704	6.37295883392496	6.71934160095478	6.44238437150231	6.15916349315608	-0.45837861657135	0.059976972497335	0.258404938740851
Merged-chr6-39377613-4	chr6	39377483	39377683	+	952.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155076)	promoter-TSS (NR_155076)	124.0	NM_001361619	72144.0	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	4.47422463263525	4.51774129131775	4.3474367882783	4.38446208103271	4.33259902703572	4.47563920404007	4.41373495989616	4.43101936172412	-0.0472457625832978	0.897211619441976	0.961579251319507
Merged-chr5-65888339-1	chr5	65888239	65888439	+	565.0	f0_balb.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	24770.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	2.72360960057431	2.72366329675959	2.66394031772893	2.95790954546979	2.26421000888884	2.41507739992883	2.3860754699831	2.59972511085359	-2.16053784118727	0.00661304243327486	0.0583283453975305
Merged-chr3-106552681-2	chr3	106552581	106552781	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286986, intron 2 of 8)	URR1B|DNA|hAT-Charlie	-4879.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	2.84227965143218	2.73316709521373	2.89917667111956	2.30911189535364	2.64258587285365	2.83122281910523	2.58035015412073	2.44009499096349	-0.411191596540733	0.577992783644519	0.814391164493464
Merged-chr5-123399130-4	chr5	123399029	123399229	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133917, intron 1 of 16)	B2_Mm2|SINE|B2	4331.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	5.23098504630035	5.09963910753417	5.16920438764585	4.57566389545925	5.36654753789519	5.37483556368196	5.29370822279714	5.25842694994746	0.571316437531705	0.0820216765064637	0.310956463934313
Merged-chr1-152790353-4	chr1	152790261	152790461	+	979.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9792.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	5.32175466104575	5.44074159453147	5.26075148755427	5.13155825753119	5.42051688458684	5.73733338899297	5.069107340591	5.51454386490664	0.302667283518511	0.319305522335915	0.631171312014998
Merged-chr18-84799469-4	chr18	84799376	84799576	+	851.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51862.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	4.10987240227395	4.26611690620141	4.20658389047738	4.13525128126951	4.31274484206434	4.33256345819708	4.47421833857487	4.29367084776289	0.432148540818705	0.257043351332845	0.568802111065118
Merged-chr5-138280194-4	chr5	138280106	138280306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172412)	promoter-TSS (NM_172412)	-269.0	NM_172412	71951.0	Mm.77066	NM_172412	ENSMUSG00000029510	Gpc2	2410016G05Rik	glypican 2 (cerebroglycan)	protein-coding	7.82497037881657	8.34001525443141	8.13958529244966	7.62847603333075	7.38490623123589	8.09870054473745	7.56558219667281	7.69350791387124	-0.390866930843611	0.09341387901563	0.334293941400378
Merged-chr5-139200568-4	chr5	139200493	139200693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024451)	promoter-TSS (NM_024451)	-44.0	NM_001256115	77053.0	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	8.18373633806371	8.23088460247341	8.3184627890744	8.19880999957219	8.34426477917381	8.45116322955225	8.37462121120473	8.30750663326255	0.174325841937368	0.240804853653706	0.55135462378061
Merged-chr17-67473355-4	chr17	67473250	67473450	+	929.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118859.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	4.83641084199555	4.44894106104141	4.27536098212986	4.80207356417879	4.57245010773713	4.86279269056068	4.88139167367263	5.11493392993014	0.505114168831562	0.183712448528305	0.480787865791462
Merged-chr12-12412933-3	chr12	12412852	12413052	+	785.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20477.0	NR_045829	70858.0	Mm.410838	NR_045829	ENSMUSG00000114136	4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA	3.74983656649537	3.51016738476619	3.55983260794942	3.26870053071287	3.38053627949808	3.51059803575256	3.43907073528353	3.20612614765278	-0.462145414599339	0.386321655008339	0.687552275421561
Merged-chr9-90235516-4	chr9	90235424	90235624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	35245.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	8.69772221276413	8.76123237927069	8.74545762757405	8.71945759679657	8.56093236663571	8.45079431931419	8.76230137946927	8.72744215627586	-0.125071331208574	0.405508936122604	0.702341680428793
Merged-chr7-99974777-3	chr7	99974674	99974874	+	745.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	5684.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	3.47725424349096	3.24018309128542	3.23887620297871	2.99799389727728	2.70861142684548	3.05582014956416	2.7973040399098	2.65055524888752	-1.99280880839938	0.00385089241604217	0.0389018835199356
Merged-chr11-120597790-7	chr11	120597671	120597871	+	832.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025389)	promoter-TSS (NM_025389)	594.0	NM_011568	21681.0	Mm.1886	NM_011568	ENSMUSG00000025134	Alyref	Aly|Ref1|Ref1-I|Refbp1|Tho4|Thoc4	Aly/REF export factor	protein-coding	3.83095595756503	4.04624862690865	4.22339329662761	3.88828718830818	4.22856240408786	4.06372202115505	4.11775428206318	4.26215209426547	0.459627377319827	0.268466627331408	0.580131084080006
Merged-chr4-116684391-2	chr4	116684291	116684491	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040442)	TTS (NR_040442)	-1208.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	3.20714562612087	3.16271915331762	3.38738430862484	3.10167818058941	3.63924158200072	3.44443939503465	3.42820808072889	3.54317653323256	1.10436476723202	0.0315628932128701	0.173162877755425
Merged-chr3-93362088-3	chr3	93361992	93362192	+	776.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31607.0	NM_009100	20129.0	Mm.1417	NM_009100	ENSMUSG00000041984	Rptn	-	repetin	protein-coding	3.77323630475723	3.58102855205938	3.51454697711895	3.81087686857909	3.45873684689287	3.5704042785414	3.50153356307724	3.72380151699655	-0.382887835137381	0.433614967259669	0.723155570632053
Merged-chr1-180429993-4	chr1	180429903	180430103	+	883.113098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	53501.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	4.28588662672711	4.36680474042524	4.09136515974452	4.31571968464215	4.10590909645145	4.16352214437661	4.39531891011823	4.85608814478939	0.329382238282776	0.436600545520074	0.72519520756011
Merged-chr4-126104913-4	chr4	126104777	126104977	+	931.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	920.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	4.38595536493716	4.50499114670921	4.88200383886238	4.25872675594329	4.8064934332949	4.65113575352672	4.5790418254194	4.47365455099228	0.27571761470633	0.471823538438517	0.750133229536227
Merged-chr6-113681531-4	chr6	113681425	113681625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 8 of 11)	intron (NM_001113553, intron 8 of 11)	-15525.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	7.30835876207077	7.34814436227078	7.0458301482745	7.35058399275759	7.0074359253143	7.05324135672036	6.70860901568237	6.73810446623021	-0.529948421799828	0.00851589880496951	0.0701809842582986
Merged-chr6-86848647-2	chr6	86848547	86848747	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177762)	promoter-TSS (NM_177762)	793.0	NR_028298	67170.0	Mm.119489	NR_028298	ENSMUSG00000100164	2610306M01Rik	-	RIKEN cDNA 2610306M01 gene	ncRNA	3.87181380655931	3.29330972961173	3.39930195476378	3.70758852233295	3.98334282669426	3.51409508395359	3.5071994418212	3.73105323028915	0.350648462654206	0.511267866174362	0.775294221147125
Merged-chr11-73128648-4	chr11	73128546	73128746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 20 of 30)	B1F|SINE|Alu	9648.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	5.57735427931814	5.99374574213697	5.40111765569957	5.3206410366872	6.20486097022117	5.83389550441921	5.52249387964619	5.57439295488002	0.378929520329635	0.232740527630986	0.542394785713292
Merged-chr6-127149753-6	chr6	127149699	127149899	+	818.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040273, exon 1 of 3)	non-coding (NR_040273, exon 1 of 3)	173.0	NR_040273	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	3.45570918995025	3.7936427360927	3.45615175210135	3.45077507276047	3.86049951492203	3.31460082544918	3.49895973883759	3.45436185085173	0.0454510094568019	0.931566534292963	0.975349664377662
Merged-chr13-75839850-4	chr13	75839754	75839954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360151)	promoter-TSS (NM_001360151)	-31.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	7.82718364051973	7.62461784058869	7.88607016914882	8.06874858477755	7.3714629115201	7.58038920199296	7.68320647276116	7.46787250165669	-0.449050480901461	0.0160425959223421	0.109864334672351
Merged-chr2-163703148-4	chr2	163703058	163703258	+	945.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011106, intron 1 of 3)	intron (NM_011106, intron 1 of 3)	9121.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	5.48813862181974	5.18320082187564	4.91849578008436	5.42967678536734	5.4714841957224	5.52715003618148	5.1782358448319	4.7455473435438	-0.0177987373044017	0.959071427544624	0.985377888348831
Merged-chr6-17595860-3	chr6	17595753	17595953	+	841.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41157.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	4.15142812019985	3.64535442363783	3.67552430744822	3.81383724941029	4.06679219725269	3.73488580159522	4.09262131209412	3.61478691792833	0.18459382320651	0.702375218841291	0.880151503501712
Merged-chr2-130293712-4	chr2	130293637	130293837	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2202.0	NM_001110513	228598.0	Mm.32582	NM_152993	ENSMUSG00000053552	Ebf4	Ebf3|O/E-4|Olf-1	early B cell factor 4	protein-coding	5.37376120835576	5.30727264470925	5.32017640453194	5.54666161887989	4.77123086420487	4.72452792966789	4.79074100818238	5.071330537386	-1.06789116990566	0.000677964754274523	0.00986041136994407
Merged-chr1-64134645-4	chr1	64134563	64134763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-13274.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	5.46497112622367	5.44810241680061	6.1608833856372	5.92837256911807	5.58519840404187	5.58268586545062	6.23085851260887	5.66139686354342	0.00578318994821813	0.985530104154267	0.994683331682783
Merged-chr17-78740515-1	chr17	78740415	78740615	+	629.5	f0_balb.idr	Intergenic	Intergenic	-3955.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	3.33327962950503	2.92892338691899	2.88583143038471	3.03093285831398	2.62542634243248	2.48927344989108	2.54098661366326	2.46743839793116	-2.85801434773091	0.000501750269160124	0.00773869607985882
Merged-chr1-24613074-3	chr1	24612973	24613173	+	976.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25636.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	13.5443333689703	13.7295275641328	13.5924728401208	13.6994470074101	5.47245718655063	6.22593487755871	6.62483884679793	6.06276186773922	-11.2281820894713	3.78322520419257e-23	1.90983111212215e-20
Merged-chr1-54774364-4	chr1	54774257	54774457	+	867.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 4 of 27)	intron (NM_001081433, intron 4 of 27)	152030.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	4.16744816707233	4.39040453065378	4.16807088140518	4.39060291284174	4.0436197451617	3.91421501578824	4.39991486698513	4.16555237045923	-0.377178822064106	0.36274458556641	0.667989466691629
Merged-chr19-11820023-4	chr19	11819916	11820116	+	878.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152220)	promoter-TSS (NM_152220)	-613.0	NR_153434	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	4.26002821990552	4.69973310132734	4.35507525283525	3.83696454512519	4.77254296683101	4.73665600369494	4.58084416994737	4.25807729574687	0.654731238320678	0.130763586356432	0.402509138266066
Merged-chr3-109008351-4	chr3	109008250	109008450	+	800.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163567, intron 1 of 10)	intron (NM_001163567, intron 1 of 10)	19257.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	3.96981418714972	3.93866019179434	4.06517999330735	3.64819212158905	4.20562929689327	3.62275818440047	4.36427536620247	3.96802579888529	0.45703192774914	0.333887937098304	0.644625911590891
Merged-chr5-120516659-4	chr5	120516566	120516766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 2 of 13)	intron (NM_001177595, intron 2 of 13)	5474.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	7.63176853431987	7.80511755960646	8.13531087032101	7.96811549380812	7.94125814733667	7.99356758942557	8.02907548496927	7.85634548953272	0.0712753098449749	0.688830093148094	0.872980495973815
Merged-chr12-77270898-4	chr12	77270789	77270989	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045554, intron 1 of 11)	MTD|LTR|ERVL-MaLR	32150.0	NR_045554	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	5.69490912647049	5.38201802818575	4.86240117517877	5.63084534698731	5.69517330505119	5.1731758350912	5.77854474492278	5.61923538366942	0.258097809650546	0.437329257612153	0.725626686579533
Merged-chr4-32352127-4	chr4	32352031	32352231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER119|DNA|hAT-Charlie	-65304.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	6.48921844833004	6.71213305244739	7.20826915878705	7.3993219647034	6.08637678830367	5.71440445555425	6.2357106457719	6.30339563489251	-1.32174963648482	3.34571809238688e-06	0.000103721632446867
Merged-chr13-110394434-4	chr13	110394360	110394560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152804)	promoter-TSS (NM_152804)	-584.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	6.29130626582344	6.40465598640349	6.65015719430706	6.4263021487102	6.44000732169098	6.71762472447617	6.65972814050685	6.60015913115104	0.224792320449251	0.298389910562883	0.610488248958896
Merged-chr9-108190198-2	chr9	108190098	108190298	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007567, exon 1 of 12)	exon (NM_007567, exon 1 of 12)	185.0	NM_007567	12217.0	Mm.20425	NM_007567	ENSMUSG00000032589	Bsn	-	bassoon	protein-coding	3.12365349871632	3.01330283168392	3.53119442252343	2.77754213692002	2.96026031148998	3.04235751066814	2.98819547195081	3.29048373853024	-0.234254604687023	0.711371032037935	0.884405406929924
Merged-chr1-154008787-4	chr1	154008694	154008894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108865.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	6.26900409162524	6.41501635494393	6.69456195668042	6.63633737010003	5.99509205311038	5.77830671078544	6.12092948617992	5.99554531772631	-0.820701471982371	0.000622238404598776	0.00919649240052664
Merged-chr6-29247298-4	chr6	29247207	29247407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25181.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	6.10161765494559	6.1599991278616	6.48337588746843	6.26926801197935	6.62559501735045	6.52073914173809	6.70104368442894	6.32154729820184	0.432827356238515	0.0563236437793858	0.248531438879976
Merged-chr2-126397658-2	chr2	126397558	126397758	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001080944, exon 13 of 28)	exon (NM_001080944, exon 13 of 28)	93895.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	3.29627409804325	3.07997718996923	3.055692227169	3.52868685634175	3.29647510733223	3.2294110627693	3.22861309421947	3.23887186860163	-0.0735940604868103	0.897549395897433	0.961755066043397
Merged-chr10-127739560-5	chr10	127739489	127739689	+	980.18573	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198035)	promoter-TSS (NM_198035)	51.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	4.84870106083341	4.77352483286875	4.74559803187739	4.27657908387236	4.38763544193151	4.54962468303907	4.8582336450046	4.54794377480376	-0.15660969953353	0.68700638951237	0.872022893505377
Merged-chr13-3893596-4	chr13	3893501	3893701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001047159)	promoter-TSS (NM_001047159)	-20.0	NM_001047159	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	6.38556173813306	6.2094976986125	6.3515384931336	6.43897668117611	6.24286756593003	6.11144305888154	6.35402325275493	6.41629334626792	-0.102564637645365	0.645925223439898	0.851097954076796
Merged-chr12-95695583-4	chr12	95695490	95695690	+	930.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	CpG	3364.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	5.03669320104819	4.68784747638675	5.23556710081134	4.93481725121378	4.66734734858951	4.69200046518453	4.39819088551679	4.68280705277212	-0.759912494644532	0.0324036119422136	0.176226825675032
Merged-chr15-89171870-4	chr15	89171774	89171974	+	874.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	2077.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	4.19227364950035	4.06729052555647	4.32501582852758	4.50493491312684	4.38124434747623	4.16925399483725	4.21988926055547	4.0942210894219	-0.169655120873894	0.679265545264997	0.868329272937217
Merged-chr13-73331063-4	chr13	73330970	73331170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053163)	promoter-TSS (NM_053163)	61.0	NM_053163	94066.0	Mm.26775	NM_053163	ENSMUSG00000021607	Mrpl36	AI646041	mitochondrial ribosomal protein L36	protein-coding	6.11679007343689	6.11324768022856	6.8632140191354	6.16521648824176	6.32714174668442	6.13850949696075	5.97643509637153	6.36279339935152	-0.202917739977221	0.462926100115088	0.744411189230342
Merged-chr11-107512094-4	chr11	107511985	107512185	+	827.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	32557.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	3.92866429096275	4.12854794075303	3.51661849468281	3.92305114193932	4.37696160230164	3.88789506737517	4.00937032686887	4.11492845185839	0.589885513007364	0.206876175526674	0.510885032710445
Merged-chr12-3833928-3	chr12	3833796	3833996	+	854.633301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	26736.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	3.76597206198706	3.61913100988633	3.81461383857599	3.67760409168269	3.46111545858556	3.54823010062168	3.59631076746904	3.90311721523499	-0.260443459714989	0.589485808781483	0.820464677958613
Merged-chr14-57611901-1	chr14	57611801	57612001	+	859.0	f0_c57.idr	intron (NM_020506, intron 9 of 22)	intron (NM_020506, intron 9 of 22)	40287.0	NR_152103	67518.0	Mm.376343	NR_152103	ENSMUSG00000097933	1700039M10Rik	-	RIKEN cDNA 1700039M10 gene	ncRNA	3.16376634105946	3.19494613047632	3.08958852694308	3.16741477184027	3.89616225030087	3.60731803860066	3.82050105808597	4.07425031400488	2.32374401599452	1.16174226491806e-05	0.000315376249712444
Merged-chr10-75516602-4	chr10	75516469	75516669	+	807.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347201, intron 1 of 5)	intron (NM_001347201, intron 1 of 5)	812.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	3.41790855075738	3.67288624855545	4.28527050468981	3.4537482613513	3.57188692616613	3.94991645030802	3.65177815629667	4.05321829160224	0.19392239576283	0.721502920227333	0.888777813664663
Merged-chr14-33185541-4	chr14	33185426	33185626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146022)	promoter-TSS (NM_001146022)	-460.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	7.85082649889982	7.86279279804016	7.67600475791058	7.84728631029145	7.9202054517611	8.06634230087822	7.81418997580352	8.00112104068613	0.178316329495553	0.276445043975651	0.588504895079849
Merged-chr3-51422225-4	chr3	51422128	51422328	+	915.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053089, intron 1 of 19)	MTD|LTR|ERVL-MaLR	6212.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	4.74599961036468	4.78205327753187	5.04202647128644	4.72699526808957	4.42224220134421	4.38811559453719	4.60924051347085	4.81542267816365	-0.553438398080096	0.124068016524953	0.390894719188572
Merged-chr4-131910770-4	chr4	131910677	131910877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102393, intron 3 of 4)	RMER15-int|LTR|ERVL	9252.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	7.54415929376621	7.21667485382006	7.70823943266935	7.69297584507231	7.47296947050328	7.1213873821983	7.01508749425703	7.09620277878844	-0.481871885766047	0.022766873510459	0.139423790678086
Merged-chr13-32913248-4	chr13	32913165	32913365	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15125.0	NM_173051	380839.0	Mm.250802	NM_173051	ENSMUSG00000079049	Serpinb1c	EIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1c	protein-coding	4.91360556248099	4.86066865151049	4.87619049853416	5.16541545314101	5.32344629491465	5.05280394150853	5.40512234724043	5.01931650892863	0.452727752728786	0.158781111058162	0.445939106060959
Merged-chr8-23237791-4	chr8	23237695	23237895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024240)	promoter-TSS (NM_024240)	-127.0	NM_024240	109145.0	Mm.27945	NM_024240	ENSMUSG00000031546	Gins4	2810037C03Rik|4933405K01Rik|Sld5	GINS complex subunit 4 (Sld5 homolog)	protein-coding	8.98205274442759	9.0353684488679	9.1728809796872	9.26238022834786	8.86206352817001	9.02484489537416	9.18682497876986	8.62315650599128	-0.223608391221804	0.195414080314443	0.496214149431049
Merged-chr1-180422274-4	chr1	180422157	180422357	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081175, exon 8 of 8)	3' UTR (NM_001081175, exon 8 of 8)	61247.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	5.26859391142931	4.93991841789815	5.20705695999852	4.96828804370732	5.4863561647797	5.24908041793434	5.24332697006033	5.63260689873089	0.598877443960343	0.0469389906692115	0.222797440440371
Merged-chr9-121718387-4	chr9	121718300	121718500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010918)	promoter-TSS (NM_010918)	-781.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	6.16041695159212	5.8503582661015	5.67187500103905	6.00253172851381	6.51177691213755	6.21521872323242	6.02988927178735	5.92432614320418	0.410698007836598	0.123256258916333	0.389247848325375
Merged-chr13-34257128-4	chr13	34257029	34257229	+	868.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	88053.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	3.81290483528987	3.84574503277418	3.96165141303532	4.10660235547043	3.88350535043983	3.76339539261273	4.03351307501564	3.70230105685931	-0.264692976843403	0.556982525605189	0.802252160011434
Merged-chr11-97801767-4	chr11	97801654	97801854	+	872.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010688, intron 1 of 6)	intron (NM_010688, intron 1 of 6)	2189.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	3.72209972385004	3.77987976899871	4.23127622874912	3.85120992000184	3.92513436330989	4.05418759099298	3.65222477878587	4.11054274994131	0.105524220161431	0.820445652916913	0.931216561407907
Merged-chr9-62343136-4	chr9	62342987	62343187	+	983.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	CpG	1744.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	4.92938001452485	4.39169240516228	5.05896523723499	5.19408169324496	4.88938222838805	4.62236043194399	4.68672128774594	4.89254180434731	-0.314597214826664	0.401176222924169	0.698869974053897
Merged-chr17-52712484-1	chr17	52712384	52712584	+	764.5	f0_balb.idr	intron (NM_001031811, intron 1 of 15)	intron (NM_001031811, intron 1 of 15)	109775.0	NM_001031811	211468.0	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	3.26009028518912	3.14899478761741	3.52206256241435	3.4854176140875	3.12690891418596	2.96415791416557	3.45890261012637	3.19952212056324	-0.617563637588729	0.287018768645745	0.598690333297253
Merged-chr10-120847967-3	chr10	120847883	120848083	+	796.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 4 of 6)	intron (NM_177092, intron 4 of 6)	-9646.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	4.39626099458525	4.27765659479405	4.27287234637127	4.61801823357306	4.411648673498	3.86538768270556	3.85383542593948	4.13288605338892	-0.756899567416863	0.0889782387272706	0.325473151465563
Merged-chr2-102924714-4	chr2	102924612	102924812	+	934.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23047.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.85718744143853	4.78202450233233	4.68092660481192	4.80212017827855	4.6523579519529	4.35936970438332	4.76707044271095	4.22832408878855	-0.552023971200771	0.134397755546714	0.408039349321968
Merged-chr7-113505260-4	chr7	113505153	113505353	+	840.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8581.0	NM_001285831	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	4.21605096533773	4.29953173371533	4.42431725013913	4.28922068593643	4.1694638383262	3.97737337462041	3.84085739130155	4.45903774327184	-0.430435977631964	0.30920953029204	0.621610405363504
Merged-chr9-56264463-4	chr9	56264382	56264582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 3 of 6)	intron (NM_172924, intron 3 of 6)	-103412.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	5.34381325419203	5.32423980430265	5.08229658088142	5.0803103143615	5.52645545100307	5.54776149257383	5.22661565901709	5.63078161628035	0.514573400335415	0.0764428865752327	0.298674355825862
Merged-chr2-167417809-3	chr2	167417708	167417908	+	908.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3902.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	3.19603676289591	3.52815899066854	3.25552496127065	3.30182543663823	3.1569006202884	3.17877768452294	3.1852126176958	3.3102384026057	-0.45130578232969	0.406414815833774	0.702925600822087
Merged-chr6-4407941-2	chr6	4407841	4408041	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97677.0	NM_007743	12843.0	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	2.73329172082867	2.89051801855997	2.99694477276878	2.64867583301178	2.84353141825376	3.10862198179827	2.9853687603599	3.21401784079023	0.979407882320322	0.111318051212267	0.368681299510704
Merged-chr18-3330641-2	chr18	3330541	3330741	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110851, intron 1 of 4)	intron (NM_001110851, intron 1 of 4)	-3050.0	NM_001110850	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	3.32411531887525	3.29026653919657	3.26984467675773	2.99113537142247	3.11596608991301	3.20091139908236	3.25700349854941	3.21098219036083	-0.0755181993374119	0.891854587637783	0.95952862608333
Merged-chr2-15029176-3	chr2	15029084	15029284	+	850.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165941, intron 8 of 11)	RLTR44B|LTR|ERVK	20128.0	NM_001165942	74455.0	Mm.478923	NM_028950	ENSMUSG00000026707	Nsun6	4933403D21Rik|4933414E04Rik|NOPD1	NOL1/NOP2/Sun domain family member 6	protein-coding	2.62045044548948	2.70084473443275	2.97178982373134	2.86549507123491	3.33603554940573	3.01766561063037	3.13198089181042	3.14328286661391	1.52708257091901	0.0153172736281594	0.106398772282498
Merged-chr17-86187987-4	chr17	86187881	86188081	+	928.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	ORR1C2|LTR|ERVL-MaLR	20196.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	4.46636668353445	3.72176195426671	4.29112511883479	4.32776173060119	4.69126704589977	4.46756419211604	4.82908795536277	4.46417574278448	0.894983383287062	0.0345905576612128	0.18406834009402
Merged-chr8-48016671-4	chr8	48016529	48016729	+	942.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26078.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	4.65568941676576	4.74018965922717	4.50393030093457	4.52950859056431	4.40229914853886	4.31047568085859	4.44245067135027	4.18109330095389	-0.612417409763515	0.100702416236853	0.348378968909986
Merged-chr9-111290032-4	chr9	111289947	111290147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18202.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	5.73575246581422	5.76101330263501	5.35738139028338	5.53641394007523	6.02777505734183	6.00879765639763	6.07494767648056	5.94161306283493	0.666205591200481	0.00839552719637726	0.0694310396390313
Merged-chr14-121938866-4	chr14	121938732	121938932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-23058.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	7.08261394916737	7.06439555279124	6.42988336952904	6.76898343649863	6.63362562321351	6.60767734307079	6.28304644864472	6.36935026693	-0.53822218172187	0.0256824193100968	0.151141010891428
Merged-chr11-62458064-1	chr11	62457964	62458164	+	688.0	f0_c57.idr	promoter-TSS (NM_177229)	promoter-TSS (NM_177229)	-396.0	NM_001039536	327942.0	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	2.9123968807668	2.96742171130868	3.4276263187674	2.70551875592781	3.79895417037292	3.54716749618964	3.51416702620268	3.25470460856363	1.93686878305653	0.00185939467807424	0.0221172884008433
Merged-chr1-138253643-4	chr1	138253536	138253736	+	934.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-20102.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	4.66128507285703	4.72596006580705	5.04289142472123	5.19118809249095	4.56344464660592	4.62168270759291	4.59985042585447	4.57573464710246	-0.740589134826911	0.0388897893713692	0.198091529242122
Merged-chr18-20895880-2	chr18	20895782	20895982	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_177038, intron 1 of 28)	CpG	196.0	NM_029491	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	5.2449728223589	5.59224342231584	5.63505843542462	5.73181439257	5.57505291259806	5.70273111089505	5.75162109731329	5.75378056159345	0.191377259213663	0.485125588147213	0.759096185959383
Merged-chr2-23068134-4	chr2	23068041	23068241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028793)	promoter-TSS (NM_028793)	-60.0	NR_149742	74159.0	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	6.95510732436319	6.97686031275791	7.23496004670621	7.08164297966681	7.03906987574644	6.82686834444998	7.33603831991084	6.72410278103241	-0.0826174628864222	0.701843632902623	0.879887873504074
Merged-chr17-35165465-1	chr17	35165365	35165565	+	1000.0	f0_c57.idr	promoter-TSS (NM_020027)	promoter-TSS (NM_020027)	-588.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	6.27936366977601	6.44427556390409	5.51937499388462	5.74637769915726	6.71180960674191	6.45633499237098	6.3021656098379	6.25733952629742	0.608126004195269	0.0385487726398889	0.196975096032638
Merged-chr6-100163310-4	chr6	100163218	100163418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124040.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	7.82711616477413	7.56615095472565	8.058000833713	8.34916937461334	7.5025729988057	7.44576033884536	7.5729205202456	7.42510789035645	-0.659246362467528	0.00186459110941869	0.0221531848735291
Merged-chr5-117355985-3	chr5	117355908	117356108	+	664.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1297.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	3.65177893278521	3.64096402621599	3.8879646931542	3.13323262024547	3.78746909172831	3.5435946807869	3.35242390005599	3.6501609294291	-0.00985462353750525	0.985784454005901	0.994784881997392
Merged-chr16-4625829-4	chr16	4625747	4625947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025571)	promoter-TSS (NM_025571)	-901.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	5.04030233543981	5.00928544885298	4.30840452983024	5.29088937910147	5.25410227172876	4.96350596575678	5.08021173235163	4.89869876950709	0.16451482686065	0.667002673442143	0.862204789067879
Merged-chr1-182707686-4	chr1	182707586	182707786	+	968.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	41494.0	NM_001033547	433386.0	Mm.338103	NM_001033547	ENSMUSG00000043429	Ccdc185	4922505E12Rik	coiled-coil domain containing 185	protein-coding	4.44449863541795	4.26521449350191	4.87039808803733	4.66778938326085	5.34478701474744	4.89420638516461	4.88220150859267	5.43955155731429	1.16553396842744	0.00164025753590941	0.0200550762499156
Merged-chr15-25302003-4	chr15	25301913	25302113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	111751.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	6.35784325266373	6.14934039328061	7.04361104542162	6.69418062941102	6.53851797544222	6.35594430489985	6.76304181548512	6.47886142596892	-0.0932126553247579	0.725697937995828	0.890921883682774
Merged-chr13-73445672-4	chr13	73445549	73445749	+	801.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	-21734.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	3.79620294348844	3.82770517395992	3.42922911898681	3.45363709356551	3.55487365298692	3.60460596218679	3.6862601449565	3.30059194309739	-0.286966400297776	0.577497031576597	0.814166268489505
Merged-chr8-109455323-4	chr8	109455227	109455427	+	956.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38700.0	NM_019938	56523.0	Mm.42166	NM_019938	ENSMUSG00000031727	Pmfbp1	1700016D22Rik|F77|Stap	polyamine modulated factor 1 binding protein 1	protein-coding	4.8260884633786	4.71154760545022	5.09255914387743	5.29944321458309	4.60556790065778	4.30032191821168	4.97478107041348	4.89541311103707	-0.599669436285723	0.116888653141644	0.37826858113067
Merged-chr6-88057039-3	chr6	88056944	88057144	+	943.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11774.0	NM_009005	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	3.61009750029553	3.88835164872743	3.8447585269128	3.75646987720773	3.22166352749269	3.2296050328623	3.31267340615877	3.32236870643934	-1.80688884542558	0.000758513379669419	0.0107872575127851
Merged-chr7-31181392-4	chr7	31181299	31181499	+	976.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	19041.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	4.79225184286389	4.7576535736528	4.38586011620998	4.88334478936535	4.67379814946994	4.19021913871495	4.69895875771558	4.78982325042899	-0.247085724191232	0.518801637436188	0.779745431679921
Merged-chr18-38946590-4	chr18	38946487	38946687	+	740.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 4 of 4)	L1M4|LINE|L1	-27888.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	3.88989007915197	4.03456203593269	4.21304917746758	4.22447581995562	3.84703315685928	4.01157283970848	3.92556839958368	3.88824736457603	-0.519929210251277	0.226650802473858	0.535279122375882
Merged-chr11-118400747-4	chr11	118400640	118400840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011150, intron 1 of 5)	MLTR14|LTR|ERV1	1219.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	5.77415764288523	6.07873475492324	5.87214074173049	5.60382717276872	6.07975243556612	6.22015316035845	5.99487556666015	5.5815306343263	0.251300646497045	0.36080867470233	0.666044260915407
Merged-chr16-43930296-4	chr16	43930179	43930379	+	834.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027801, intron 6 of 15)	intron (NM_027801, intron 6 of 15)	40377.0	NM_027801	212153.0	Mm.209835	NM_027801	ENSMUSG00000022701	Ccdc191	2610015P09Rik|8430422M09Rik|AU040712	coiled-coil domain containing 191	protein-coding	3.78130543609528	3.72520083186088	3.62084006102128	3.8934822193827	3.78246139530678	3.55191069178934	3.90751518377632	3.8765910010639	0.0577020070334043	0.901178741501409	0.963342914941175
Merged-chr11-8569869-4	chr11	8569752	8569952	+	981.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	94683.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.20964663368606	5.20245839355173	5.17977259933493	5.37404077713938	4.89952257191388	4.87466349545434	5.24366530126481	5.04523748051684	-0.442517772841262	0.151290348356717	0.434782610856056
Merged-chr15-98978025-3	chr15	98977936	98978136	+	789.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7929.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	3.21992296180149	3.00241381822394	2.90298757560657	2.88724931034857	2.66715460599548	2.88083606302005	2.62919263267622	2.90154190599309	-1.11509618424692	0.0884728069128743	0.324553006617693
Merged-chr14-57619660-4	chr14	57619562	57619762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020506, intron 6 of 22)	intron (NM_020506, intron 6 of 22)	45294.0	NM_020506	57258.0	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	5.50067497192985	5.58092064774134	5.64037654849117	5.95058566587472	5.63990033764774	5.58846557711203	5.73615558340099	5.9384706838313	0.0493860659579303	0.858770554113389	0.946576014812915
Merged-chr8-88694450-4	chr8	88694310	88694510	+	978.408325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2618.0	NM_001128170	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	4.59040485528764	4.51782310208022	4.15280355068592	4.20796152739279	4.80416694287096	4.38103912112852	4.37079901322537	4.34364764006708	0.298327653866376	0.457194579230961	0.740379782387965
Merged-chr7-19094965-1	chr7	19094865	19095065	+	1000.0	f0_c57.idr	exon (NM_011383, exon 1 of 3)	exon (NM_011383, exon 1 of 3)	421.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	4.73117093075748	4.56035482720578	4.61255719005026	4.80828059344306	4.63919305166933	4.82764473226361	4.59145448884751	5.08919202648915	0.221461915813766	0.530895494561389	0.786869282179433
Merged-chr17-26639989-3	chr17	26639898	26640098	+	932.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 8 of 9)	intron (NM_026170, intron 8 of 9)	-36398.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	3.96935475901205	3.49323116404844	3.87899259336547	4.19663378481637	3.64369368981864	3.40845924985295	3.66054568094949	3.8766313954215	-0.767747205139467	0.137820430266122	0.412944957312355
Merged-chr17-65630759-4	chr17	65630643	65630843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	9013.0	NM_153519	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	5.9777865801627	5.61092900625295	5.63137576460773	5.98807215682683	6.24657510810571	6.04127882119004	6.28643213918201	5.76250793849522	0.443591357831915	0.0990814773024399	0.345102782976628
Merged-chr12-85602046-3	chr12	85601921	85602121	+	860.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	2003.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	3.66509972014433	3.82062654178566	3.86318685208235	3.4759635743968	3.49316982480962	3.78453179814546	3.48218484396554	3.81425438410362	-0.178790279609797	0.71761366309199	0.887104549117071
Merged-chr2-75981829-4	chr2	75981659	75981859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030188, exon 1 of 1)	5' UTR (NM_030188, exon 1 of 1)	208.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	6.11523483064446	5.89963131645005	5.50158938710171	5.70148456184797	6.43076289775658	6.47933666039038	6.10491819884932	6.43287021949916	0.856340285408692	0.000788621927037473	0.011113308284419
Merged-chr13-9765026-4	chr13	9764910	9765110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347472)	promoter-TSS (NM_001347472)	-54.0	NM_001347473	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	5.61760345916821	5.68600409897432	5.36663604101032	5.17901802575814	5.53782045550722	5.60273874449429	5.79854252063115	5.42331331790094	0.228862966073678	0.433895364183936	0.723267326930245
Merged-chr19-43965794-4	chr19	43965675	43965875	+	992.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030703, intron 6 of 8)	intron (NM_030703, intron 6 of 8)	20745.0	NM_030703	93721.0	Mm.206774	NM_030703	ENSMUSG00000025196	Cpn1	0610011F20Rik|CPN	carboxypeptidase N, polypeptide 1	protein-coding	5.1386153008567	4.90282780525737	5.65972631658388	5.01177238602444	4.75529890055523	4.7510309346135	4.91616769434944	4.74332188134886	-0.804069854480872	0.0235107201073566	0.142348129630491
Merged-chr2-116890527-4	chr2	116890417	116890617	+	934.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355572, intron 10 of 10)	intron (NM_001355572, intron 10 of 10)	-9635.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	4.82755870908942	5.17320806433164	5.42963857539029	5.71516125928679	4.56546050534384	4.83890462087255	4.92036296530036	5.04701755882652	-0.951329998226934	0.00926445325222611	0.074731926341818
Merged-chr19-6668748-4	chr19	6668625	6668825	+	956.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125655.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	5.52562607983537	5.50453403143247	5.52659376468254	5.29930502669269	5.43057708287288	5.01602423057051	4.89487336405088	5.3886347168761	-0.437495712030222	0.160276255667028	0.448333867881921
Merged-chr1-92676447-4	chr1	92676364	92676564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27623.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	4.15474355039066	4.42209750556831	4.65934826864628	4.54770068782538	4.33100451054644	4.33066858422219	4.70312155281773	4.20279541033048	-0.136018093854618	0.733178839676984	0.894408319554536
Merged-chr3-79664951-3	chr3	79664849	79665049	+	641.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212452, intron 9 of 17)	intron (NM_212452, intron 9 of 17)	35870.0	NM_029482	75939.0	Mm.221520	NM_029482	ENSMUSG00000027811	4930579G24Rik	-	RIKEN cDNA 4930579G24 gene	protein-coding	3.37190775898407	2.9898820001001	3.14104919792964	3.45286059623734	3.34491245864172	3.31372088643279	3.30548285799143	3.26020710309232	0.161801138415525	0.772582812373617	0.910940763350478
Merged-chr19-46136207-5	chr19	46136117	46136317	+	661.650024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007703)	TTS (NM_007703)	4318.0	NM_007703	12686.0	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	3.6619948769047	3.3287136107351	3.4606376034739	3.08396319476134	3.16378129333982	3.46310448687178	3.14449621899747	3.79265226739618	0.0739393418435246	0.899442628378713	0.962569456167014
Merged-chr5-20941402-4	chr5	20941274	20941474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	ORR1D2|LTR|ERVL-MaLR	-9615.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	7.1659294093082	7.28667824942001	7.44159880602532	7.60035503514691	7.5213480658958	7.23415126340108	7.63678773126452	7.13834019574253	0.0135480429330969	0.94806902032388	0.981359015857754
Merged-chr5-121545444-4	chr5	121545332	121545532	+	903.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010765, exon 1 of 14)	5' UTR (NM_010765, exon 1 of 14)	460.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	4.39244265756414	4.65028486223927	4.63796525343935	4.25303933517384	4.3261181620339	4.61113155621927	4.45957651138089	4.67140790863815	0.0793525033769317	0.834833624885926	0.937111320810386
Merged-chr15-39112820-4	chr15	39112728	39112928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172402)	promoter-TSS (NM_172402)	-46.0	NM_198606	223499.0	Mm.321937	NM_198606	ENSMUSG00000022300	Dcaf13	Gm83|Wdsof1	DDB1 and CUL4 associated factor 13	protein-coding	8.68536587146815	8.98202502506694	8.6777726807917	8.86304623980878	8.92530563808863	9.0926171919871	9.04105230699994	8.7250456461186	0.175741494335986	0.27819837464374	0.590343204506655
Merged-chr5-77191850-4	chr5	77191756	77191956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19349.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	5.34470967096071	5.79795553213195	5.69040351095724	5.34445768404663	6.31674521649321	6.36169751506671	6.46525357502062	6.33975630650801	1.30037047288708	2.33379026213557e-07	9.25442100660431e-06
Merged-chr12-72536289-4	chr12	72536187	72536387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026327)	promoter-TSS (NM_026327)	-70.0	NM_026327	67708.0	Mm.11233	NM_026327	ENSMUSG00000034501	Pcnx4	1810048J11Rik|4932413O10|AU017192|Pcnxl4	pecanex homolog 4	protein-coding	8.95367246821285	8.94594618380407	9.16145134121289	9.27920506695446	8.83908371681327	8.94206468494226	9.22555260737772	8.97496230219826	-0.117773298500551	0.47584576081632	0.752603574391689
Merged-chr9-63006255-4	chr9	63006137	63006337	+	880.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25358.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	3.97303970727773	4.21947192492364	4.44939355428078	4.25195001145619	4.05323208219977	4.04244747761045	3.90474789587082	4.16530850792397	-0.491431861610079	0.241014020814682	0.551619163882296
Merged-chr2-91971019-4	chr2	91970891	91971091	+	821.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7428.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	3.71818864417654	3.18271332599267	3.0179377628264	3.12857457114452	3.24313030762531	3.58867057030966	3.55964756742588	3.76066633883162	0.884496318653347	0.128186594968511	0.398419005426123
Merged-chr9-95693849-4	chr9	95693732	95693932	+	820.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 7 of 8)	intron (NM_029620, intron 7 of 8)	56204.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	3.42438807096662	3.65227996601863	3.70622858646283	3.64905772726578	3.81066897249708	3.53895757004473	3.78707509336321	3.70409583217431	0.318996925658633	0.500394513717889	0.768850577358824
Merged-chr7-90019747-4	chr7	90019648	90019848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9411.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	8.00948882724191	8.26989669176555	8.35610344503488	8.26795282043194	7.86463030992173	8.04321460816569	8.26398885281545	7.97773499281885	-0.245694993262304	0.158614254941178	0.445618498595942
Merged-chr14-76382475-2	chr14	76382375	76382575	+	831.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-32486.0	NM_001310646	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	3.64322583671345	3.41211536615592	3.69776941213034	4.2735150219015	3.61565947878866	3.64479243512501	3.78338218524545	3.69569346658865	-0.391639816758535	0.464664948805666	0.745523090592339
Merged-chr5-29195840-3	chr5	29195743	29195943	+	923.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289757)	promoter-TSS (NM_001289757)	-150.0	NM_001289757	56874.0	Mm.87352	NM_021470	ENSMUSG00000029130	Rnf32	1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2	ring finger protein 32	protein-coding	3.48997625526853	3.16233934720628	3.53901376855701	3.50098232319846	2.98979875111008	3.12809630543626	3.0773747366999	3.43800200830424	-0.999613048684225	0.0842907692540595	0.315882275679571
Merged-chr16-97954448-4	chr16	97954368	97954568	+	935.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001320385, intron 1 of 2)	intron (NM_001320385, intron 1 of 2)	8154.0	NM_001081685	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	4.28705196555535	4.86233519944411	4.97863310378232	5.17988545431391	4.81106767664074	4.61830864030834	4.71481609004447	4.4833915950692	-0.444780230783673	0.256939773178517	0.568647554151895
Merged-chr10-23854020-3	chr10	23853879	23854079	+	714.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011979, intron 2 of 6)	intron (NM_011979, intron 2 of 6)	2517.0	NM_011979	26464.0	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	2.04510085107275	1.92334773321531	1.96027348404923	1.73975743780058	2.35580674350599	2.4534018323249	2.45855102877448	2.63882894296799	5.72318292306222	5.81144094881323e-08	2.62137234027615e-06
Merged-chr11-108225440-4	chr11	108225347	108225547	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	B4|SINE|B4	118441.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	4.86793426779874	4.72049868831375	4.46892580525884	4.65926439661512	5.72399221411147	5.00841336327575	5.44121323429268	5.04412641111486	1.27907133504617	0.000244227145364185	0.0042806806155817
Merged-chr6-82045343-3	chr6	82045244	82045444	+	973.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	3716.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	5.05323468839595	5.42334000169034	5.59475187560401	5.50049769664109	4.00867468003741	3.9760117710422	3.89680385903448	3.97817502728599	-3.43371496572092	1.75859854316027e-14	2.62421982607138e-12
Merged-chr13-113606305-4	chr13	113606209	113606409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	12255.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	5.22920137221513	6.21942166694539	5.47456365047163	5.51555070522324	5.47869578081451	5.26881754079064	5.33136712555206	5.00746589373662	-0.66028272000541	0.0564649283625687	0.248861742162184
Merged-chr19-4943159-4	chr19	4943111	4943311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172835)	promoter-TSS (NM_172835)	-84.0	NM_001347422	240518.0	Mm.277580	NM_172835	ENSMUSG00000024901	Peli3	6030441F14Rik|A930011L17|BC028931	pellino 3	protein-coding	6.41744205356591	6.73674035571392	6.83000578796715	5.85026806445899	6.34780057331457	6.74166110952453	6.19943381014887	6.12199953022351	-0.190162564829176	0.52354879702639	0.782514327605179
Merged-chr18-65800418-5	chr18	65800279	65800479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025468)	promoter-TSS (NM_025468)	-199.0	NM_025468	66286.0	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	7.63907565243131	7.93605256488765	8.25117269888118	7.44837418452408	7.88847764057595	8.1703684694458	7.96771933111598	7.72062759319854	0.126076084596372	0.56835565437898	0.808665348796528
Merged-chr2-35841745-4	chr2	35841640	35841840	+	953.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029774, intron 6 of 9)	intron (NM_029774, intron 6 of 9)	22550.0	NR_040618	77665.0	Mm.400558	NR_040618	ENSMUSG00000086449	9030204H09Rik	-	RIKEN cDNA 9030204H09 gene	ncRNA	4.56763221840798	4.29761181670052	4.60947779466376	4.97065264372485	5.07995444150984	4.61350443345704	4.70301997168557	4.38680140813095	0.173293384416178	0.670252368735713	0.863963841647699
Merged-chr15-100304198-4	chr15	100304082	100304282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027334)	promoter-TSS (NM_027334)	-635.0	NM_027334	70152.0	Mm.488086	NM_027334	ENSMUSG00000054619	Mettl7a1	2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1	methyltransferase like 7A1	protein-coding	6.48562982026436	6.114540921923	6.31069826527905	6.55051902217991	6.52589899217007	6.19323802973858	6.22068776852065	6.86138669163749	0.14711184335318	0.565937898280287	0.807783748011785
Merged-chr8-40495825-3	chr8	40495729	40495929	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011135, exon 6 of 7)	exon (NM_011135, exon 6 of 7)	14650.0	NM_001361938	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	5.42196772085012	5.07188423251799	5.10947221687455	5.42127967379416	4.54030288985456	4.27201116941976	4.23957388439093	4.3635923001223	-1.90399796744013	3.18768476778672e-07	1.22912358659963e-05
Merged-chr2-78049531-4	chr2	78049456	78049656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1621.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	6.24862367093706	6.65604924503888	6.71976266550419	6.49028596930587	6.3125396015775	6.74691470734041	6.52191782230608	6.43376941809082	-0.0508072429671542	0.825782837161551	0.933172369962049
Merged-chr12-111672342-4	chr12	111672243	111672443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021273)	promoter-TSS (NM_021273)	-5.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	6.06185938624591	5.97285089583745	5.65141812248	5.51050346039958	5.94818216199146	6.37409059828822	6.13057682917101	6.31880700545311	0.617382548493739	0.0220762291294207	0.136856643118891
Merged-chr14-55142112-4	chr14	55142026	55142226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-25191.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	5.99126595649208	5.28017485936165	5.53756813797042	5.59610517352299	5.76344393865546	5.5959494676117	5.76751968907612	6.19107864273234	0.373708721514764	0.208663316946498	0.513007192521551
Merged-chr10-12735899-4	chr10	12735815	12736015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 11 of 73)	intron (NM_011682, intron 11 of 73)	125820.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	6.52651933256419	6.72825118933567	7.33101734503702	7.10999250967368	6.85964233254952	6.63342782594369	7.08011428585947	6.99388530114591	-0.0883972021714622	0.718535949524579	0.887589294908369
Merged-chr14-74841903-4	chr14	74841802	74842002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 2 of 19)	RLTR11A2|LTR|ERVK	105975.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	6.02978276349871	6.24254517375817	5.641430065497	5.88562618354806	6.08460178669667	5.97840603503433	6.15640499235697	5.720044946717	0.0493630327408913	0.85262943727208	0.944594954733765
Merged-chr7-125554609-4	chr7	125554515	125554715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	2333.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	6.07568435421297	5.84670438551164	6.034204391325	5.83979585096401	5.97894628380534	6.27284006408164	6.38907341779831	6.26578736247574	0.441359090449369	0.0688950893392509	0.280510442974404
Merged-chr8-115494578-4	chr8	115494463	115494663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	212331.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.87522507910326	5.81584545051937	6.39445805964241	5.90943401401153	5.68327389513767	5.77292695493091	5.59488071074036	5.77687421885056	-0.493325316803247	0.0677287826156742	0.277799318092058
Merged-chr4-107577641-4	chr4	107577532	107577732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147221, intron 4 of 10)	intron (NM_147221, intron 4 of 10)	105957.0	NR_151717	56296.0	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	5.50249683031201	5.62373529750566	5.58861082747965	5.87126801108196	5.42665479697743	5.79129576536479	5.829591436432	5.98152816405104	0.153494817756533	0.587343744543754	0.819125757139383
Merged-chr5-23387103-4	chr5	23387001	23387201	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47252.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	5.49337886556757	5.61290513316253	5.67395244487798	5.79005382540955	5.40216792634601	5.2540402275525	5.5463322703498	5.10787552927933	-0.54686726492543	0.0547143212152216	0.244307801880576
Merged-chr5-23712423-9	chr5	23712225	23712425	+	872.6611330000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015554, intron 1 of 4)	CpG	342.0	NR_038090	433855.0	Mm.205125	NR_015554	ENSMUSG00000105987	AI506816	-	expressed sequence AI506816	ncRNA	4.74126410025672	5.09457022378442	5.44280234795201	4.68361247651914	4.15353507777602	4.23599040763092	4.02812682121781	3.98028345639613	-2.11154293043561	1.1616771095368e-06	4.01198520037456e-05
Merged-chr3-87859980-4	chr3	87859894	87860094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033573, intron 6 of 6)	intron (NM_033573, intron 6 of 6)	13239.0	NM_021309	27371.0	Mm.86361	NM_021309	ENSMUSG00000028071	Sh2d2a	Lad|Ribp|Tsad	SH2 domain containing 2A	protein-coding	5.38230389958385	5.57849663639654	5.15238544865549	5.46966433499771	5.70031576713494	5.64500450060405	5.64927257894406	5.37949521824438	0.326352656964223	0.245371939855771	0.55645105639258
Merged-chr10-7057747-3	chr10	7057651	7057851	+	648.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34566.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	4.10816420295218	3.70765867123466	3.53116056310212	3.68023162158533	3.20528954136934	3.39984799051927	3.51723515718793	3.34905907070878	-1.3536276087311	0.0116177989452104	0.0878138803356835
Merged-chr19-9982695-5	chr19	9982691	9982891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073181, exon 2 of 5)	non-coding (NR_073181, exon 2 of 5)	145.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	8.1783049021861	8.60646026447341	8.09759599923513	7.98261709584639	8.24636973911529	8.65510307040329	8.3378373170412	7.89483397676245	0.0929833370453094	0.669959272082781	0.863754660065936
Merged-chr8-111393827-4	chr8	111393707	111393907	+	829.8690190000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178086)	promoter-TSS (NM_178086)	14.0	NM_178086	338521.0	Mm.41083	NM_178086	ENSMUSG00000033579	Fa2h	FAAH|Faxdc1|G630055L08Rik	fatty acid 2-hydroxylase	protein-coding	4.444819901103	3.83224000981201	4.48438417347811	4.55869305264827	4.39734613409394	4.20831536368193	4.16574400864389	4.36127473755625	-0.182154675381841	0.671949029873011	0.864972601452772
Merged-chr19-42004601-3	chr19	42004484	42004684	+	809.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	MTC|LTR|ERVL-MaLR	22821.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	3.16116438372963	3.20761092571554	3.27682629019982	3.24369182033317	3.15736921562241	3.00289824084148	3.26414363273626	3.42905576533915	-0.00672344470725216	0.990274411290113	0.996152324385859
Merged-chr13-60508464-3	chr13	60508399	60508599	+	775.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93448.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	2.83233230965469	2.8175336618402	2.83262362339999	2.65894583307039	3.14310431860666	3.54820205891396	3.15025424283493	3.5177019705845	2.37243212693158	7.51909416598496e-05	0.00159144098614524
Merged-chr12-99576109-4	chr12	99576022	99576222	+	995.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136760, intron 2 of 3)	intron (NR_136760, intron 2 of 3)	12281.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	5.32636326747104	5.15857928234084	5.07858096663215	5.39693167253921	5.1631045747048	5.03250293557005	5.38170790962847	4.96858063351529	-0.202531854809191	0.511616587631971	0.775558664488469
Merged-chr11-100360411-4	chr11	100360314	100360514	+	972.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-4273.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	4.69753796632601	4.77793597093044	4.78145144576503	4.97422357533573	4.88416387831954	5.30329738632408	5.35350790877898	4.99967450808562	0.614803719282735	0.0661985388168249	0.274082073715162
Merged-chr8-27043465-4	chr8	27043389	27043589	+	954.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039077, intron 1 of 4)	intron (NM_001039077, intron 1 of 4)	934.0	NM_054057	114863.0	Mm.277501	NM_054057	ENSMUSG00000031485	Plpbp	1700024N20Rik|2200002F22Rik|Prosc	pyridoxal phosphate binding protein	protein-coding	4.35762890762966	4.84367619189046	4.26166319813051	4.45710977010327	4.47004782728143	4.89039563383854	4.38444759113333	4.48817411488485	0.146659313633211	0.710059875554043	0.883983559728082
Merged-chr15-80257110-2	chr15	80257010	80257210	+	863.0833130000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_001287180, exon 4 of 4)	exon (NM_001287180, exon 4 of 4)	1926.0	NM_009716	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	2.75377952180099	2.67511110339818	2.88509341077391	2.76792146414918	2.7220143867021	3.17224067252139	2.87458758802258	3.05806707967337	0.844412355337175	0.175682677543833	0.470516510700699
Merged-chr7-84591534-4	chr7	84591433	84591633	+	855.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010176, intron 11 of 13)	L1ME3A|LINE|L1	14409.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	4.76775485522757	5.30094791214513	4.47486259132997	4.00016316592843	5.0438337039063	4.97976689539631	4.70773581888096	4.56273058259672	0.23249365808669	0.606419246465457	0.829368409964156
Merged-chr19-21913203-4	chr19	21913127	21913327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134887.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	7.25272861768171	6.72852403709987	7.40424073508345	7.48145822723478	7.08500276444132	7.04917891446572	7.26964119499037	7.35101821219108	-0.0827881186046449	0.715062217662719	0.886010584897636
Merged-chr4-105169136-3	chr4	105169044	105169244	+	902.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 1 of 5)	intron (NM_080555, intron 1 of 5)	11797.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.59936671033347	3.36939343945444	3.81251206778294	4.3006651716688	3.65597642456492	3.7746720864497	3.74693176441827	3.65436008872052	-0.374702123206134	0.489849103315981	0.761966459176932
Merged-chr14-40947853-6	chr14	40947726	40947926	+	848.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	383.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	3.65249782982793	3.66011315385424	3.80714684902577	3.97930051791171	3.88081769708162	3.65417882908744	3.69174048224627	3.53718563325442	-0.264787871538688	0.581828097036326	0.816420227529328
Merged-chr13-60491828-1	chr13	60491728	60491928	+	562.0	f0_c57.idr	Intergenic	Intergenic	-110119.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	2.53838277823052	2.40467408336968	2.53861340922683	2.34563627301346	3.03997391795292	3.29338517317589	2.99991848714187	3.17240252369395	3.51276538374424	6.63835288290617e-07	2.40586211737463e-05
Merged-chr11-63047264-3	chr11	63047192	63047392	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-14367.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	3.35940112343254	3.13886053357542	3.24927740242341	3.24030036172126	3.30499377860511	3.10341669540556	3.34630566819587	3.30397516165567	0.0869835522494045	0.87067665346275	0.951430072143722
Merged-chr6-46143342-3	chr6	46143247	46143447	+	712.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 8 of 23)	intron (NM_001004357, intron 8 of 23)	1083286.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	3.10298441290879	2.83027031249082	3.37848300973416	3.32582104904079	2.92674750496699	3.2144269835461	3.26199867269795	3.10182191652292	-0.198776422164601	0.743903712575149	0.899139452494253
Merged-chr14-31189542-4	chr14	31189417	31189617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 7 of 13)	intron (NM_001347583, intron 7 of 13)	17309.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	6.21753231062592	5.95737105295322	5.76295474244797	6.19914740165976	5.72124713038315	6.15391138206852	5.88064786098909	6.10000974951146	-0.143893272827425	0.582756895884537	0.816777579274426
Merged-chr5-114690344-4	chr5	114690236	114690436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019821, intron 1 of 4)	intron (NM_019821, intron 1 of 4)	599.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	5.95940059515716	6.76781756356222	6.03077690064539	5.72617846318851	6.4817861467069	6.78166319267481	6.30119862585136	6.0490447433412	0.370256645156658	0.238304293987645	0.548762903324056
Merged-chr5-100632947-4	chr5	100632845	100633045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41311.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	6.41383568407291	6.33363373026692	5.90655131791113	6.02925592217042	6.11492736906739	6.32223102161387	5.8523596000685	5.92618583320503	-0.177618251851969	0.493704516300966	0.764438087754564
Merged-chr6-136551117-3	chr6	136551017	136551217	+	905.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	32266.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	4.37212402366831	4.44125641204711	3.83799503572692	4.00065915297439	4.09946960169823	3.78123298399837	3.64829874550447	3.8898972670854	-0.830222782750503	0.0841846164890002	0.315610282158988
Merged-chr2-148875594-4	chr2	148875488	148875688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009976)	promoter-TSS (NM_009976)	-76.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	9.11078517459917	8.93657723002729	9.29617426034265	9.17060595697162	8.97881381368822	8.94360184431305	9.12288875323643	8.82725674788296	-0.200543161199402	0.195506313873505	0.49635687137214
Merged-chr11-76780327-4	chr11	76780239	76780439	+	905.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007754, exon 21 of 21)	3' UTR (NM_007754, exon 21 of 21)	-16761.0	NM_001356321	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	4.31596787940549	4.14334828947266	4.4062724645171	4.67243341481282	4.45330605220434	4.49112627896653	4.38650670855287	4.70929902261637	0.218173850249231	0.579979101274773	0.815517916470182
Merged-chr7-43346361-7	chr7	43346252	43346452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-4989.0	NM_001271019	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	5.63758903444923	5.10908480193802	6.02872589432146	5.88031409190341	5.2191152836707	5.53261761393253	5.53176360242229	5.63457410785892	-0.3903959429326	0.225558357233471	0.533992493498344
Merged-chr12-102442822-4	chr12	102442705	102442905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-2992.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.78490409435149	6.88640342918229	6.77189087297464	7.43134215484351	6.65128711419218	6.36290394218738	6.89741058456469	6.36719476260579	-0.597459218098997	0.019885508349424	0.127619745631922
Merged-chr17-34143662-4	chr17	34143542	34143742	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1774.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	4.78334327360227	5.20287505710803	4.66135819783822	4.70960942696902	5.12130485009609	5.10407221314542	4.79978750808099	4.8193970674415	0.238393251215176	0.49195647806277	0.763262787218927
Merged-chr16-92826898-3	chr16	92826807	92827007	+	921.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111021)	promoter-TSS (NM_001111021)	-833.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	3.7075039342302	3.68630443817722	3.847390166588	3.56073826547487	3.47137805589753	3.20468485117607	3.53766142879457	3.70583632473961	-0.662675460351315	0.197706747585246	0.499044951465308
Merged-chr6-97479036-4	chr6	97478964	97479164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	8756.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.06879552578811	7.4029600027528	7.87571420636981	7.38067895485707	7.36879565760244	7.46210699885255	7.68577274348523	7.57977340786669	0.0862595275012513	0.69200742741944	0.87471864571853
Merged-chr15-25355523-4	chr15	25355428	25355628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58236.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	7.4487769514895	7.09843306989664	7.27768077688477	7.66114920935224	7.61207464809343	7.23008738602709	7.53879810098212	7.41616668967063	0.0844402396188637	0.68382761978205	0.87046260876057
Merged-chr2-52967122-4	chr2	52967021	52967221	+	983.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	109253.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	4.66233018578713	4.82786411060537	4.84468605392575	4.85329835938017	4.74396815533496	4.48562893972806	4.3854681493921	4.62043581985872	-0.487365439705999	0.166317266381272	0.457483352156455
Merged-chr4-139208439-4	chr4	139208350	139208550	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	14339.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	4.8772501477812	4.46986298088332	4.87805291765151	4.9951695634886	5.23632088347475	5.20240270438176	5.72111297393892	5.30420763407823	1.03429370627348	0.0023212480906153	0.0262218882466126
Merged-chr8-56054049-3	chr8	56053928	56054128	+	773.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080438, intron 4 of 9)	intron (NM_080438, intron 4 of 9)	113203.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	3.09107712760345	2.87459478348192	3.28347276445167	3.60731607350296	2.98972434939188	3.76584390776899	3.58297501208065	3.22079179875137	0.608135875091528	0.36250909380292	0.667676726900533
Merged-chr19-40965423-3	chr19	40965322	40965522	+	812.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008528, intron 3 of 16)	intron (NM_008528, intron 3 of 16)	29113.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	3.87472537252956	3.7542262136722	3.92102446389488	3.21730770686663	3.59174007743336	4.04525302920903	3.42513234803111	3.67222920469309	-0.042285192638377	0.938198784995661	0.977531308163744
Merged-chr1-93014629-4	chr1	93014536	93014736	+	878.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001110315)	TTS (NM_001110315)	8302.0	NM_177587	208760.0	Mm.235537	NM_177587	ENSMUSG00000045091	Aqp12	AB084104|mAQP12	aquaporin 12	protein-coding	4.23676845298489	4.20158188018529	4.50537341580952	4.27113462050191	4.655309084253	4.59436359610498	4.85771856365618	4.46132441992251	0.798395691548265	0.0304426528483973	0.168878309336456
Merged-chr11-77785882-4	chr11	77785767	77785967	+	986.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	8632.0	NM_001291212	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	5.81971954844434	5.35414208377971	5.48964868388818	5.75533147100876	5.2866847664735	5.21995161637935	5.34959428882609	5.03640809936485	-0.695098018196688	0.0190216529327069	0.123680776706491
Merged-chr10-91191506-3	chr10	91191404	91191604	+	653.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19885.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	3.15769885611174	2.99693757101834	3.1581092235271	3.12572326913597	2.99629598190753	3.20909706278743	3.02537638223825	3.41931334163421	0.228487699548106	0.688165851387211	0.872645510806949
Merged-chr17-45691714-4	chr17	45691605	45691805	+	650.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026732, intron 1 of 2)	intron (NM_026732, intron 1 of 2)	5356.0	NM_026732	68463.0	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	3.21619909936861	3.5204615459546	3.21655249501048	3.26882178557037	3.73403606974299	3.88304767776701	3.55567111999924	3.3436884664966	1.09890035350112	0.0361776911241769	0.189094718499617
Merged-chr18-80041826-4	chr18	80041717	80041917	+	939.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5078.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	4.89584750768815	5.27891762099793	4.51575718172932	5.16336919752516	5.03481359412626	5.10645486640349	4.83645244030529	4.92953146884074	-0.0546757698227821	0.87676099903016	0.953778173570731
Merged-chr10-118086087-4	chr10	118086045	118086245	+	916.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	-55642.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	3.66640656679018	3.87528250633805	4.3437816796071	3.78979281942163	3.63583663499164	3.539516757523	3.47578222412773	3.71949307685277	-1.02669993635712	0.042572833185039	0.209581528184532
Merged-chr15-73162140-4	chr15	73162042	73162242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	22805.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	6.21816483169201	6.16841972304293	6.31080789271453	5.73135878959391	6.22555034595042	6.02471209391526	6.36329093777207	6.1565416669699	0.146058672419482	0.570771793407387	0.810192301084349
Merged-chr5-3301314-4	chr5	3301211	3301411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42582.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	6.23120233745661	5.93605330522875	5.9603485874038	6.1730007722637	5.82811369425648	5.57743712059869	5.71906058914285	5.74407502739099	-0.575778187581503	0.0219624969314169	0.136387067621822
Merged-chr19-32832334-3	chr19	32832251	32832451	+	663.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74774.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	3.6932811732844	3.45355245101733	3.38042378040596	2.9396912735259	3.68975663517351	3.23393655046972	3.53164254222479	3.54456740985239	0.41331482872141	0.476289745230273	0.752838598679729
Merged-chr10-67743083-3	chr10	67742985	67743185	+	839.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	169577.0	NM_178679	216049.0	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	3.475936282666	3.43766615825166	3.3654855688856	3.47648449528758	3.32229890180182	3.53664677337524	3.10200684554496	3.576331864013	-0.162286701110872	0.759121867227102	0.905467910117288
Merged-chr6-71537469-4	chr6	71537356	71537556	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-6396.0	NM_001361405	66700.0	Mm.181278	NM_025783	ENSMUSG00000053119	Chmp3	25.1|4921505F14Rik|9130011K15Rik|CGI-49|D6Ertd286e|NEDF|Vps24	charged multivesicular body protein 3	protein-coding	5.39706252093119	4.85632181810183	4.91544027564431	4.82661046540338	4.9701154640301	4.97730787390449	5.09348247305529	5.01773910934301	0.0154753669127026	0.962850289388649	0.986716902231301
Merged-chr1-127978237-4	chr1	127978136	127978336	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 12 of 20)	intron (NM_001285945, intron 12 of 20)	109463.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	5.1310801502927	5.2018309598028	5.29020654710905	5.8160075116511	4.84181362204813	5.05190175337436	5.37670641575434	5.12844379035379	-0.557226276977742	0.105781325512897	0.35827031636289
Merged-chr6-87730829-4	chr6	87730763	87730963	+	888.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159697)	promoter-TSS (NM_001159697)	-6.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	4.54754258944481	4.27909207752555	4.68497927304394	4.4797856173184	4.21316800486996	4.08613448495937	4.00152004241404	4.01529665914589	-1.02005584401899	0.0123221119427966	0.0915623348967868
Merged-chr19-32949517-4	chr19	32949449	32949649	+	714.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	191972.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	3.68826382847792	3.75510316028694	3.68879663322533	3.42639897913136	3.7726686508756	3.95563161421854	3.51143722786854	3.26756496599978	0.0461853157044322	0.929661127375114	0.974602301222681
Merged-chr2-127335418-4	chr2	127335282	127335482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010090)	promoter-TSS (NM_010090)	-777.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	7.05746440851877	7.4711681230396	7.17856608181747	6.54599800510763	7.4055453222992	7.79431424700991	7.25151815966894	7.29331564496618	0.480480915967456	0.0556705160483048	0.246935356253648
Merged-chr11-106723043-2	chr11	106722932	106723132	+	582.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-7751.0	NM_001305157	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	3.54314084458349	3.35969650985183	3.04696093389814	3.34904863636924	3.36462822376905	3.55207797239437	3.36551548665213	3.85913480418399	0.708688982573406	0.196490020206992	0.497650268585023
Merged-chr14-101515654-3	chr14	101515546	101515746	+	743.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	93545.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	3.19974054268007	3.19757158206209	3.78146460014516	3.58362630934402	3.15920068785324	3.11228389681649	2.99346643087894	3.13580861301821	-1.37490298972496	0.0217282121150716	0.135257535114537
Merged-chr1-132311671-4	chr1	132311563	132311763	+	893.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4462.0	NM_001195025	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	4.4860519447867	3.93115429466879	4.27928620159216	4.5358159818748	4.47718756483274	4.49516751471807	4.3041610661421	3.97421458586771	-0.01163439662024	0.978521406586425	0.992431461005174
Merged-chr19-32224918-4	chr19	32224822	32225022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 4 of 9)	Lx9|LINE|L1	-13909.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	6.72277748982236	6.94162549949913	6.55951188581509	6.62686260909429	6.34208133157348	6.41130480391905	6.52596009317522	6.09825776653784	-0.534695690100447	0.0179979104039928	0.119169606013563
Merged-chr5-125183763-3	chr5	125183652	125183852	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4538.0	NM_001253904	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	4.48200889066227	4.66109366937171	4.51982599408422	4.70102707358599	3.97465464758823	3.79741285666816	3.72871395428841	4.03476277293793	-1.82053513363445	2.45534862081264e-05	0.000609589325011589
Merged-chr14-79519188-3	chr14	79519135	79519335	+	852.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	3561.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	3.65362623817207	3.3169758322568	3.88796504076372	3.56240351388608	3.58479167001106	3.82393087868498	3.3566807408454	3.48824557412126	-0.134711168185173	0.795689779221273	0.920897975671128
Merged-chr16-94328200-5	chr16	94328093	94328293	+	874.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133229)	promoter-TSS (NM_133229)	-229.0	NM_133229	170765.0	Mm.42604	NM_133229	ENSMUSG00000022941	Ripply3	Dscr6	ripply transcriptional repressor 3	protein-coding	4.5320466201168	4.26397705063814	4.35911150086629	4.4576287665596	4.74834679350517	4.70480097253427	4.34004955540847	4.75235506363468	0.536630386395787	0.144255681541659	0.423177347364563
Merged-chr7-127104726-4	chr7	127104619	127104819	+	856.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13283.0	NM_178901	101602.0	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	4.55026127374213	4.42077049122063	4.34362482429021	4.12240313165803	4.45744408554705	4.64322110053957	4.41044508057655	4.3851162950168	0.288615725738132	0.449775503265563	0.734839862538956
Merged-chr10-94919521-5	chr10	94919479	94919679	+	907.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 2 of 30)	intron (NM_018797, intron 2 of 30)	24999.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	4.39293508088302	4.34093253546584	4.87049150529294	4.57876349653706	4.68174321477607	4.78794608890743	4.74404717296971	4.89981917678842	0.461590290080247	0.197731648210966	0.499070386139272
Merged-chr18-14783151-4	chr18	14783044	14783244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001100449)	promoter-TSS (NM_001100449)	-101.0	NM_001100449	72504.0	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	8.86911896497429	8.84059621630736	8.8236227347104	8.85866618569335	8.95235819858009	9.06384586728318	8.79180179192378	8.54317109995656	0.00636065297581838	0.968889140323766	0.988837646318788
Merged-chr12-82151192-4	chr12	82151090	82151290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18826.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	6.42588873313003	6.18352679537114	6.17264262540169	6.30365430612998	6.15514990142502	6.32825491411357	6.21876292427092	6.10637418689377	-0.114438128123786	0.611545977800908	0.832378452125268
Merged-chr2-11513257-4	chr2	11513172	11513372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	-11182.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	6.8660169537223	6.56879198528146	6.94333057985636	7.05675602709259	6.5960313638875	6.37102546858039	6.8060263859167	6.58550493020046	-0.395434984884478	0.0766834155080578	0.299328150943134
Merged-chr5-17857463-4	chr5	17857378	17857578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	-7686.0	NM_001159556	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	8.24173623871353	8.14527773705912	7.97074919369953	8.18222495271518	7.87686961728972	7.85341219836757	7.96653680583662	7.6616229435693	-0.381071288005808	0.0222235671820828	0.137420839931672
Merged-chr1-20951541-4	chr1	20951406	20951606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027974)	promoter-TSS (NM_027974)	-120.0	NM_027974	71877.0	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	6.72531667407887	6.8863812119509	7.07469826342768	7.08580281981721	5.16737763004436	5.68347173218203	5.85258762878133	5.68390122269467	-2.07484304765278	1.84228859615502e-15	3.20616772581219e-13
Merged-chr9-25519401-4	chr9	25519298	25519498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	37801.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	7.6784478209307	7.46687915601529	7.89038280693989	7.91472011134109	7.50165446673221	7.34941424782733	7.57505005269238	7.58976686299809	-0.325248399269181	0.0837049164974365	0.314557428402462
Merged-chr7-4724537-4	chr7	4724438	4724638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142792, intron 1 of 5)	intron (NM_001142792, intron 1 of 5)	544.0	NM_001142792	330460.0	Mm.361851	NM_177887	ENSMUSG00000046456	Tmem150b	A630041N19|Tmem224	transmembrane protein 150B	protein-coding	6.9088362092654	7.02415802609294	7.36426199438711	7.29893473819348	6.97910261955142	6.91226940837968	7.08766767470861	7.16379287164042	-0.179435803525835	0.377961313663854	0.68062105257873
Merged-chr12-85270432-4	chr12	85270341	85270541	+	920.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304475, intron 1 of 11)	CpG	150.0	NM_001304475	217716.0	Mm.311981	NM_145446	ENSMUSG00000021245	Mlh3	AV125803|BB126472	mutL homolog 3	protein-coding	4.3665939305385	4.66673140203261	4.67668539072003	4.13975628452382	4.45957014157041	4.6237426762947	4.1105782375373	4.01607464371254	-0.337701438915404	0.4340800431191	0.723456574627106
Merged-chr1-128244166-4	chr1	128243998	128244198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026390)	promoter-TSS (NM_026390)	-39.0	NM_026390	67812.0	Mm.293321	NM_026390	ENSMUSG00000026353	Ubxn4	1300013G12Rik|Ubxd2|mKIAA0242	UBX domain protein 4	protein-coding	7.55897435315344	7.65671402427881	7.16260473984037	7.42242427019932	7.79162335421071	7.80721929086559	7.78060543454154	7.52787731469406	0.354721558052648	0.0602240902662889	0.259108469600107
Merged-chr12-76943748-4	chr12	76943693	76943893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	18455.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	5.64375217716956	5.55702745128781	5.5931689729154	5.78487065107942	5.49641555101275	5.60040810209679	5.51166453188378	5.50779023029988	-0.225065824581034	0.393993298799627	0.693181625312274
Merged-chr1-65473346-4	chr1	65473252	65473452	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_A|LINE|L1	162095.0	NM_139270	213527.0	Mm.294225	NM_139270	ENSMUSG00000025946	Pth2r	Pthr2	parathyroid hormone 2 receptor	protein-coding	4.65758133738424	4.6478990069506	4.69603015039338	5.23092917914056	4.53267565349794	4.22047537305045	4.6736397051599	4.14763448179574	-0.945082930827704	0.0213891840443138	0.133870444625729
Merged-chr13-58273911-7	chr13	58273789	58273989	+	874.738098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019832, intron 1 of 11)	CpG	299.0	NM_019832	56278.0	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	3.65965312497341	3.5695104162391	3.60533519178809	3.62708657441302	3.27313744134379	3.77962867669978	3.79519538767194	4.02770743614227	0.382271107026924	0.45509140773059	0.738746012503745
Merged-chr4-35164478-4	chr4	35164392	35164592	+	791.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7008.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	4.44196404060684	4.32494864959106	3.99940001919519	3.47388677376188	3.71427424469221	4.07568295982109	3.77555678102171	3.73113692139221	-0.756992485174233	0.146936534161628	0.42761123563813
Merged-chr11-8497288-4	chr11	8497194	8497394	+	865.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 16 of 30)	intron (NM_001083587, intron 16 of 30)	167241.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	4.26987228197022	4.21832200064814	4.63410077644629	4.92891254418688	4.15934938451074	4.30055568686264	4.34111574345162	4.11989211513261	-0.786427901715907	0.0642335155036159	0.269357688230934
Merged-chr10-43668120-4	chr10	43668026	43668226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74699.0	NR_033558	414125.0	Mm.244305	NR_033558	ENSMUSG00000075184	F830002L21Rik	F930017D23Rik	RIKEN cDNA F830002L21 gene	ncRNA	7.44318898662594	7.38616837379678	7.43475278782002	7.78196443246012	7.40951489574289	7.45680505914561	7.58690938072609	7.49601048342845	-0.0640065590909597	0.733442504966914	0.894472844896284
Merged-chr9-65551199-4	chr9	65551106	65551306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28881.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	7.24296359318896	7.69741348919087	7.53699665844703	7.07228565787143	7.07118106389219	7.33056518455414	7.58364052678366	7.07500342756075	-0.168195452702546	0.461518617205084	0.743289746901092
Merged-chr17-34135493-4	chr17	34135391	34135591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010386, exon 2 of 6)	5' UTR (NM_010386, exon 2 of 6)	-9925.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	7.84743486820391	8.21729568873665	7.90108188144913	7.96342393004298	8.18120598979235	8.25589522575014	8.00819011416354	7.82042383518207	0.111709336943454	0.539224994815214	0.792007921956875
Merged-chr3-79844171-4	chr3	79844027	79844227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1465.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	6.07470897022103	5.7691097760074	5.79480562893319	6.14237505839731	5.63644645224331	5.64400203767067	5.85813941469758	5.68999511007584	-0.422582640414777	0.105305292949604	0.357099908770156
Merged-chr8-75213094-4	chr8	75213032	75213232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029182)	promoter-TSS (NM_029182)	-812.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	7.30874141444501	6.79795047908406	7.11918579704614	7.30234123228577	7.0044984488546	6.81476697438792	7.12820887487864	6.81857539730359	-0.277459643715415	0.194221396136865	0.494645726487711
Merged-chr9-52048097-4	chr9	52047959	52048159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001104617, exon 1 of 11)	5' UTR (NM_001104617, exon 1 of 11)	118.0	NM_001104617	19684.0	Mm.245746	NM_009041	ENSMUSG00000032050	Rdx	AA516625	radixin	protein-coding	5.80203007320368	5.72647546990773	6.31293039344593	5.70458448433966	6.13972783295293	6.07567963595106	6.02215780297023	5.98543066208748	0.257576518306674	0.330030198429249	0.641433224839941
Merged-chr10-118581537-4	chr10	118581437	118581637	+	955.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25012.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	4.45262266320311	4.26872366276084	4.98515139196824	5.45759937651524	4.20377802413608	4.53871309815774	4.76028557750406	4.85102682721717	-0.579289929097032	0.211155521622013	0.515762969934016
Merged-chr12-82169315-4	chr12	82169223	82169423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167983)	promoter-TSS (NM_001167983)	-693.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	7.26073893567444	7.47943267305807	6.74222249410133	6.96145396762252	7.50909926124537	7.40664414807268	7.3274663946251	7.16878773846905	0.301343857960575	0.176337968605071	0.471307205534908
Merged-chr9-45138715-3	chr9	45138659	45138859	+	864.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013390)	promoter-TSS (NM_001013390)	-283.0	NM_001013390	399548.0	Mm.335112	NM_001013390	ENSMUSG00000046480	Scn4b	Gm1471	sodium channel, type IV, beta	protein-coding	2.57788518406893	2.58060845825903	2.68781908624644	2.33754976842457	2.34409633565466	2.18823923701428	2.38306440025997	2.24797442143403	-1.5720488715172	0.0483991994816551	0.227123326734225
Merged-chr2-142859728-4	chr2	142859615	142859815	+	801.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 3 of 26)	intron (NM_001355123, intron 3 of 26)	41749.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	3.76097611082293	3.52327529576035	3.81365787731163	3.69477079171018	3.81150321495827	3.70962127147828	4.10935839500111	4.08579732300839	0.686291716231583	0.134065100208525	0.40769972518767
Merged-chr17-86445114-4	chr17	86445022	86445222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 2 of 14)	intron (NM_011104, intron 2 of 14)	-157944.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	8.40716419459535	8.25608869195037	8.17777161027479	8.30889950075791	6.95909756499801	7.13066515930789	7.31897060522797	7.20108861156077	-1.49639194962776	1.76770942478101e-17	4.24803273902987e-15
Merged-chr5-114934711-3	chr5	114934603	114934803	+	576.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359946, intron 3 of 4)	MTB_Mm|LTR|ERVL-MaLR	-7499.0	NM_028211	72357.0	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	2.81666388724772	3.19595269905753	2.96428458727144	2.62688629472604	3.36625737201043	3.5005460633475	3.14732450031914	3.47817260790722	1.86398283942015	0.00255583815593127	0.0281962188625282
Merged-chr7-26243288-4	chr7	26243198	26243398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-23533.0	NM_001167540	100312477.0	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	5.51708122204868	5.50118136392417	5.68793674386883	5.03379546117225	5.27983072961994	5.43485478821406	5.16835942089904	5.25556969530556	-0.271596892863828	0.388203530803509	0.688886817059235
Merged-chr14-120407024-4	chr14	120406913	120407113	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 8 of 8)	intron (NM_001360376, intron 8 of 8)	-71448.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	5.28660797408497	4.86944080224045	5.19699039083707	5.71837298529283	4.79281266066814	5.01822833838082	5.26107812627516	5.16175740885944	-0.481471004547812	0.174459486870047	0.468918013274924
Merged-chr18-60797165-3	chr18	60797068	60797268	+	934.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6681.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	3.24638915818296	2.98773929103258	3.16585057267909	2.40824927327784	4.76254265642592	3.85305428633369	4.25758390239204	4.66860412225235	5.53189900530687	1.8236650760763e-05	0.000469633344609387
Merged-chr18-32694861-4	chr18	32694766	32694966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045381, intron 4 of 4)	intron (NR_045381, intron 4 of 4)	-120517.0	NM_021367	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	5.60273099954336	5.21678142131593	5.4414892050299	5.59705440837021	5.44646883907096	5.36562067739805	5.86599186777975	5.40854331032777	0.0993015367064941	0.735701254937629	0.895629391634899
Merged-chr10-80180165-4	chr10	80180014	80180214	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007909, intron 1 of 3)	intron (NM_007909, intron 1 of 3)	632.0	NM_007909	13637.0	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	5.26308878184828	6.51444393791075	5.98741588469225	4.60292626248313	6.24235740844622	6.16303267815889	5.63324813092439	5.10919549384111	0.0844142991139333	0.90796508446912	0.965937748978087
Merged-chr8-71485953-4	chr8	71485854	71486054	+	873.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164679, exon 1 of 17)	5' UTR (NM_001164679, exon 1 of 17)	113.0	NM_001164679	382014.0	Mm.260360	NM_001164679	ENSMUSG00000034863	Ano8	BC053460|Tmem16h	anoctamin 8	protein-coding	4.34133450546905	4.65409500629172	4.38591296158996	4.46578669118282	4.47499748307886	4.32688021491171	4.40832152055829	4.24687257672377	-0.22714813602067	0.545948448450931	0.796068106366666
Merged-chr2-32575032-4	chr2	32574960	32575160	+	829.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198191)	promoter-TSS (NM_198191)	-658.0	NM_198191	227733.0	Mm.78923	NM_198191	ENSMUSG00000046854	Pip5kl1	BC028795	phosphatidylinositol-4-phosphate 5-kinase-like 1	protein-coding	3.96786951285139	4.52480422777128	3.80978862563345	3.75169044429279	3.48826900264265	4.09370989581084	3.84884284377027	4.27424675249673	-0.252218654248449	0.630217619290034	0.842667104605937
Merged-chr3-105047800-4	chr3	105047703	105047903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	B4A|SINE|B4	5150.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	6.40094892969804	6.26235905846014	6.14446987774638	6.38006612113062	6.22044821581982	6.02500936948251	6.22957718884939	6.05582180347117	-0.252002526929279	0.269749879939094	0.581516951486606
Merged-chr18-56562436-4	chr18	56562335	56562535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138600)	promoter-TSS (NM_138600)	-134.0	NM_001162989	56698.0	Mm.214569	NM_019996	ENSMUSG00000008301	Phax	2810055C14Rik|4933427L19Rik|AU018701|AU018854|D18Ertd65e|Rnuxa|p55	phosphorylated adaptor for RNA export	protein-coding	5.53732513538584	5.59022395073444	5.71404195739285	5.69780077039166	5.40285107154234	5.60079124357351	5.27602654170639	5.3616073335477	-0.395121035746889	0.145589736350543	0.425250305806328
Merged-chr11-48902200-4	chr11	48902105	48902305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024230)	promoter-TSS (NM_001024230)	-53.0	NM_001024230	432555.0	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	6.27621344010746	5.89261031730753	5.6583578544579	6.27539032465507	6.00442894380399	5.55706703457637	6.34511526891279	6.08489281976212	-0.0481452370705173	0.869485630774809	0.951054729822361
Merged-chr15-81858764-4	chr15	81858640	81858840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020507)	promoter-TSS (NM_020507)	-414.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	5.77129398306939	5.69064505181291	6.01436494714397	5.46415682241634	5.77252234447525	5.73870772371702	5.7903057818506	5.92741981148963	0.128238878919754	0.634014663363442	0.844935157053758
Merged-chr7-118470634-4	chr7	118470524	118470724	+	698.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21351.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	4.18005675348348	3.83657966893418	3.93224038875094	4.20074281152569	4.24838266138486	4.26005781727294	4.4767587660044	4.08449491121336	0.546025620146146	0.194062872826657	0.494413830044481
Merged-chr17-18558963-4	chr17	18558854	18559054	+	836.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-22773.0	NM_001104547	433070.0	Mm.215962	NM_001104547	ENSMUSG00000091679	Vmn2r96	EG433070	vomeronasal 2, receptor 96	protein-coding	4.6990420045814	4.85822575286841	5.17978502564881	5.02302113547381	5.18689792768302	4.27081074347386	4.97141398617636	4.95900565083715	-0.106113927350828	0.782906087829412	0.915409560838585
Merged-chr6-87850533-4	chr6	87850447	87850647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355195, intron 1 of 4)	CpG	559.0	NM_001109745	12785.0	Mm.290251	NM_013493	ENSMUSG00000030057	Cnbp	AA408710|Cnbp1|Znf9	cellular nucleic acid binding protein	protein-coding	5.20927939924825	5.39135418454263	5.6351346241105	4.96264132301355	5.20090599053315	5.54327050068279	5.48080896963539	5.74578767164621	0.341387664965996	0.286616187872988	0.598306458930478
Merged-chr6-145308012-4	chr6	145307901	145308101	+	892.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	57449.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	3.86639114105826	3.94879085539524	4.24686710374764	3.80515607245445	4.03142197416407	4.19573748595311	4.00559537003962	4.32355164677411	0.463813541668439	0.280164666619015	0.592253666749477
Merged-chr7-64141026-4	chr7	64140909	64141109	+	971.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12826.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	5.15159248592979	4.79670240136268	4.8348081787076	5.20685555868224	5.54152342324059	4.84536502268086	5.12706551719295	5.08491746942281	0.319132169036966	0.357236292640142	0.663450889042078
Merged-chr7-30322404-4	chr7	30322319	30322519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033140)	promoter-TSS (NM_001033140)	-44.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	8.66523376313756	8.63356361762258	8.79346116576923	8.63338164480047	8.39340355636769	8.46454228729171	8.46662326367297	8.11948123504987	-0.393382603481044	0.0129177295759297	0.0946249946984765
Merged-chr15-76715341-4	chr15	76715238	76715438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145471)	TTS (NM_145471)	4697.0	NM_001358893	223664.0	Mm.277582	NM_145471	ENSMUSG00000033728	Lrrc14	E130306I01Rik|mKIAA0014	leucine rich repeat containing 14	protein-coding	6.7131856398745	6.57048049159838	6.57209448900994	6.64085199904157	7.05573203588305	6.49253253466964	7.01724947755768	7.11444787124359	0.456999901403122	0.0369028559398532	0.191354230031214
Merged-chr17-26203543-4	chr17	26203438	26203638	+	907.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081069, intron 3 of 16)	CpG-6118	597.0	NM_001081069	50782.0	Mm.109840	NM_001081069	ENSMUSG00000024186	Rgs11	C78048	regulator of G-protein signaling 11	protein-coding	4.18069206412379	4.30915310494	3.9802139277497	4.35285039779153	4.13119808260239	4.30697228177809	4.11634751314654	4.43102155820757	0.0553172964016106	0.891979693150392	0.9596010491436
Merged-chr15-59799438-3	chr15	59799339	59799539	+	967.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4480.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	3.54128997151325	3.59569877442824	3.83680657677634	3.99553642720375	3.33191488288763	3.41272274872675	3.41398835827741	3.48341684797136	-1.19007423934253	0.0213609167425808	0.13375989204013
Merged-chr7-101361275-4	chr7	101361191	101361391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	13222.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	6.22963894904397	6.29643415395777	6.32322830479002	6.30561388310582	6.19107675530264	6.22152715831456	6.17966399978889	6.12656420291749	-0.168199835384338	0.442023068571356	0.728861398703653
Merged-chr11-49982533-2	chr11	49982433	49982633	+	948.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-42798.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	2.8541485757786	3.04465818600161	2.85450696870433	2.54899243429642	2.83798693751595	2.96350297765694	2.64646177494545	2.85305749492398	-0.0115954862292333	0.985923903338324	0.994788540667462
Merged-chr7-130847399-4	chr7	130847323	130847523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18301.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	5.71965506523202	5.82430292234185	5.7710217331575	6.1789808973415	5.91024018383346	5.40886429586029	5.90270260289322	5.90687702968481	-0.161026842162752	0.565697300807986	0.807708329369941
Merged-chr6-57767293-3	chr6	57767185	57767385	+	727.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	57840.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	3.52588859112913	3.5589749915822	3.24098545423388	3.26242830230522	3.28734632149923	3.35352891871493	3.51165625560057	3.52433657749188	0.0720376080039182	0.890350933511529	0.958997364311038
Merged-chr4-155491735-4	chr4	155491631	155491831	+	950.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160017, intron 1 of 10)	CpG	370.0	NM_001160016	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	4.70388786187745	4.88145246021274	5.25967613626568	4.12602907177872	4.92187236426447	4.88215905965628	4.68251486155974	5.17419397739739	0.26166198478713	0.528311023092192	0.784934672970676
Merged-chr6-30499212-3	chr6	30499107	30499307	+	841.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347087, intron 5 of 13)	intron (NM_001347087, intron 5 of 13)	10566.0	NM_001347087	72649.0	Mm.45418	NM_178625	ENSMUSG00000029782	Tmem209	2700094F01Rik|AI428435	transmembrane protein 209	protein-coding	3.48122901521339	3.39277675732295	3.53149835435738	3.46070257953091	3.37014177891042	3.2439328500918	3.24903682127941	3.06464849036698	-0.810783691404589	0.133108668391698	0.406301381167833
Merged-chr1-172143775-4	chr1	172143674	172143874	+	897.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4241.0	NR_151641	98193.0	Mm.159915	NM_153555	ENSMUSG00000026554	Dcaf8	AA408877|AA433120|AA792214|AU018973|C76055|D1Dau35e|D1Ucla4|H326|Wdr42a	DDB1 and CUL4 associated factor 8	protein-coding	4.60006778495091	4.12754986162476	4.29931323856812	4.21334397109998	4.75593831538647	4.61169333147551	4.68817571346034	4.70783931253998	0.867136310105375	0.0178305430325198	0.11848022988347
Merged-chr8-67950438-4	chr8	67950334	67950534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177698, intron 3 of 14)	intron (NM_177698, intron 3 of 14)	24140.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	6.20043590031866	6.14839346306835	6.16353843249814	6.15998010494157	5.84736111702107	5.93541890567801	5.90100190484602	6.05886144106279	-0.366823100374611	0.113434834134084	0.37240800972418
Merged-chr3-136668945-3	chr3	136668870	136669070	+	743.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1096.0	NM_008913	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	3.86661623936059	3.72404758809398	3.9681983522586	4.18728283814207	3.90679568315578	4.18536641843883	3.9514206219958	3.96585230799809	0.104878049412462	0.814951324829864	0.928638763308491
Merged-chr10-43702605-4	chr10	43702469	43702669	+	840.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43589.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	4.69959899677488	4.81713172466476	4.54360498613884	4.52221168241276	4.55815442919895	4.63233460480901	4.56354294511922	4.54071496281099	-0.156846031099744	0.655779849205379	0.85629437016692
Merged-chr2-91098824-4	chr2	91098749	91098949	+	886.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011355, intron 1 of 4)	intron (NM_011355, intron 1 of 4)	2171.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	4.37877629981864	4.03610254059445	4.37947551799288	3.9990733595296	4.43256292335087	4.23323212877165	4.31821443415888	4.3352257275766	0.349594144441483	0.383436041783699	0.685330303789723
Merged-chr4-149099769-4	chr4	149099637	149099837	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019781)	promoter-TSS (NM_019781)	75.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	5.42081935525695	5.28381810388571	5.4217686394931	4.91427051940017	5.19447969238467	5.05469846012818	4.7714010956875	5.19007208911186	-0.358356373330891	0.28176032027407	0.593925998911027
Merged-chr7-126487276-4	chr7	126487162	126487362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163713)	promoter-TSS (NM_001163713)	-93.0	NM_172745	233870.0	Mm.197829	NM_172745	ENSMUSG00000073838	Tufm	2300002G02Rik|C76308|C76389|EF-TuMT|EFTU	Tu translation elongation factor, mitochondrial	protein-coding	7.49300818503846	7.814681648146	7.6396022383989	7.61893996074496	7.59524050500182	7.85075077834979	7.94406705716396	7.60839224514867	0.139801068842082	0.442945637581785	0.729629169998677
Merged-chr12-69332299-4	chr12	69332153	69332353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025441, intron 16 of 32)	PB1D9|SINE|Alu	24923.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	4.6393934489434	4.6068764868333	4.78782021168034	4.81750078882421	4.55160101047146	4.35737460548921	4.45321088467062	4.8848272634298	-0.310656658389659	0.393067516442587	0.692266411611797
Merged-chr13-69391784-4	chr13	69391731	69391931	+	828.983337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142033.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	3.6548638580225	3.47382763401444	3.65534632685492	3.55453373838908	4.15457361678553	4.18004358426236	3.99292955487534	3.91674215448349	1.39401932799957	0.00164085914094974	0.0200550762499156
Merged-chr6-129236018-4	chr6	129235892	129236092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040268, intron 2 of 3)	MLTR14|LTR|ERV1	2053.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	7.92772904808846	8.05656346070866	8.26628337470525	8.17173112703008	8.09574061431183	7.8263254767419	7.89816212014853	7.91653764048321	-0.219669980844356	0.195179667424155	0.495943926980143
Merged-chr11-89093314-3	chr11	89093227	89093427	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033266)	TTS (NM_001033266)	19486.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	4.25292928007143	4.44300175052237	4.16378351228818	4.19589521263707	4.0661542813112	4.13942282972938	3.94906946138689	4.37406744606626	-0.325510276818547	0.427652635495831	0.718837362252816
Merged-chr12-86887770-4	chr12	86887665	86887865	+	960.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2951.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	5.13847013228116	5.28536747155811	4.58331199076516	4.66301203963838	5.14454898428076	5.51947779146152	5.04808142949835	5.49815318050735	0.693699891785102	0.0508247286117454	0.233774045741869
Merged-chr12-112562778-3	chr12	112562646	112562846	+	775.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-26038.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	3.6095108375867	3.47234986827655	3.50376632227021	3.51511605598253	3.3647736148929	3.43949441328377	3.78165944497108	3.50186646829747	0.0114297648695374	0.981717612595011	0.993492379943959
Merged-chr10-69222173-4	chr10	69222077	69222277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 2 of 11)	MTC|LTR|ERVL-MaLR	8983.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	5.89519331128233	5.35197781230088	5.28498434025885	5.96695710975863	5.68803129919812	5.65120947753891	5.68626979143	5.55621739381087	-0.0507492336819673	0.866670922777907	0.950019210311976
Merged-chr11-60104934-4	chr11	60104833	60105033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009021)	promoter-TSS (NM_009021)	-80.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	5.10132974215542	5.28630204562749	4.91174623048446	5.1890535356768	5.42593472430889	5.50296422006787	5.41517754443267	5.661610545242	0.650728209397023	0.0251075375644784	0.148840627659033
Merged-chr16-35986531-4	chr16	35986431	35986631	+	919.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008465, intron 1 of 13)	intron (NM_008465, intron 1 of 13)	3168.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	4.69551668082407	4.72090742393225	5.33338806477494	5.08688244073211	4.44263470446358	4.30007173612489	4.6344583863149	4.69318895375766	-0.978260178435879	0.00978261935794668	0.0776826335297426
Merged-chr2-155309421-8	chr2	155309329	155309529	+	987.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004721, intron 7 of 11)	intron (NM_001004721, intron 7 of 11)	33065.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	5.13032716715658	4.89493312556462	4.43171159755527	4.96086461097333	4.63899042864318	4.92638680247841	5.27201912446848	5.03455285148554	0.195701395785713	0.594290554196742	0.823411261518897
Merged-chr7-127849290-4	chr7	127849205	127849405	+	927.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009294)	TTS (NM_009294)	7497.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	4.08854370639888	4.80279515785089	4.65409059974122	4.49432069748548	4.20254500448875	4.26929087667033	4.22478806902142	4.50226474596623	-0.548283614269228	0.179885482848838	0.476182408557307
Merged-chr14-98814019-3	chr14	98813925	98814125	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	232111.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	4.82725058188724	5.47205132155687	5.36467875055229	5.52438083551407	3.99653250446192	4.4223987631314	4.32188736287497	4.22776567286971	-2.40137823158877	1.3414098410719e-09	8.42720309599793e-08
Merged-chr11-5115130-4	chr11	5115011	5115211	+	988.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080595, intron 13 of 14)	intron (NM_080595, intron 13 of 14)	14946.0	NM_001290493	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	5.47491746019651	5.22016543539132	4.88778305284142	5.262583369683	5.85326648115589	5.73035333605193	5.82631660131046	5.29350263246687	0.811898714087485	0.00774127524864025	0.0656129928804598
Merged-chr6-40580491-1	chr6	40580391	40580591	+	615.333313	f0_balb.idr	intron (NM_001038604, intron 5 of 6)	B4A|SINE|B4	5314.0	NM_021364	23845.0	Mm.103765	NM_021364	ENSMUSG00000029915	Clec5a	Clecsf5|Ly100|MDL-1|Mdl1	C-type lectin domain family 5, member a	protein-coding	4.06479621491818	3.93412445334803	4.19180066490602	3.58488075406209	4.3658836847546	3.83154546666911	3.80658178779226	3.45433748284695	-0.112497546469811	0.833267400547301	0.936237948428556
Merged-chr3-26932596-4	chr3	26932485	26932685	+	971.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029150, intron 10 of 10)	intron (NM_029150, intron 10 of 10)	221269.0	NM_007900	13605.0	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536	ect2 oncogene	protein-coding	4.26851391281438	3.72659416748163	4.31232306757476	4.21220285882472	4.24492624719012	3.98381947569566	4.52198724504719	4.50532645966657	0.444693231692044	0.312628120920755	0.62451046865229
Merged-chr3-94612456-4	chr3	94612346	94612546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011656)	TTS (NM_011656)	-29730.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	6.4087291690939	5.78307532219167	6.19429507520167	6.5767979992294	6.18492609804762	5.69497491987932	6.42526495432144	6.22842520192581	-0.183278487052779	0.52643270624924	0.783730806678686
Merged-chr6-142785516-4	chr6	142785420	142785620	+	861.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001145390)	TTS (NM_001145390)	18946.0	NM_001145390	330440.0	Mm.484618	NM_001033417	ENSMUSG00000048473	Sult6b2	Gm766	sulfotransferase family 6B, member 2	protein-coding	3.81472015380947	3.84755664210672	3.81524780528978	4.20411781339117	4.28164974959402	3.63884815374742	3.94676272132762	3.58466474677147	-0.09635514418309	0.849477888588725	0.943128665229694
Merged-chr11-80177737-2	chr11	80177637	80177837	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 10 of 10)	intron (NM_172133, intron 10 of 10)	-6135.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	5.77189977181859	5.70688612323503	5.59398347028346	5.5624693463035	5.48888982282068	5.76991655413009	5.94030263959268	5.88255048250549	0.194813081311608	0.466197207344128	0.74629927630325
Merged-chr10-78069271-4	chr10	78069190	78069390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015790)	promoter-TSS (NM_015790)	-78.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	5.68546246317186	5.66084509558479	5.76128571248929	5.61111324986306	5.91914084232565	5.57840683101846	5.88992501249584	5.8503942996566	0.247487277460369	0.330799988352083	0.642094846510006
Merged-chr3-94851903-3	chr3	94851803	94852003	+	803.483337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165948, intron 1 of 18)	intron (NM_001165948, intron 1 of 18)	14336.0	NM_172683	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	3.53447149345011	3.74138838060206	3.70444652868344	4.00767757165787	3.59180123337207	3.30781383512274	3.96997711687524	3.98577203616972	-0.0716029707372658	0.893153217332477	0.960067775059052
Merged-chr19-47395633-4	chr19	47395515	47395715	+	958.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 3 of 14)	intron (NM_008018, intron 3 of 14)	68796.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	5.00886683398384	4.88876200567662	4.6995943516787	4.88377371809348	4.81163494789092	4.61960279955419	4.59791892973287	4.43837126686201	-0.507539809518471	0.144653192924256	0.423797463707514
Merged-chr16-31935425-4	chr16	31935330	31935530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172822, intron 1 of 2)	intron (NM_172822, intron 1 of 2)	1579.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	6.74755408186155	6.86614803786235	6.82022748183289	6.87625859061752	6.65599977224717	6.76954643965855	7.03531750019072	6.90906810032053	0.0166027397859399	0.934517090533226	0.976356212091203
Merged-chr17-44456210-4	chr17	44456106	44456306	+	849.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	267634.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	3.911476656378	4.18084317182965	3.62681424162572	3.52258219808182	4.21944361666444	4.22858056934648	3.89561718179449	4.1001001745352	0.785298333849077	0.0952687165371334	0.337773061087698
Merged-chr9-44483986-2	chr9	44483886	44484086	+	771.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357490, intron 1 of 7)	intron (NM_001357490, intron 1 of 7)	1161.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	3.08920422155428	2.92481031112142	3.08961970039405	2.55311585514453	2.99868081942056	3.00658904574532	3.39342191032398	3.30951917538076	1.06215650862315	0.0984665838010635	0.343994301133918
Merged-chr1-157554510-5	chr1	157554428	157554628	+	737.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159986, intron 14 of 25)	intron (NM_001159986, intron 14 of 25)	28358.0	NM_001159986	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	3.06957361937916	2.910550756085	3.51236181388285	3.08440483131247	3.01613494063331	2.76564202044405	2.87134111969295	2.94516575400685	-1.06228206672333	0.0982849301376953	0.343741305143033
Merged-chr13-41615614-3	chr13	41615507	41615707	+	721.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163572, intron 1 of 2)	intron (NM_001163572, intron 1 of 2)	9391.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	3.97065969653285	3.4459655800282	4.24024676111201	3.87926838956811	3.79212247647067	3.28049841166714	3.61419161826565	3.38156209576614	-1.12546790674137	0.0464017221345184	0.221384019023587
Merged-chr1-131446739-4	chr1	131446637	131446837	+	956.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	80624.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	4.81526652735209	4.53551601020562	4.88590323943791	4.74035963662449	4.6480067393159	4.95205176144171	4.99000951086672	4.44122491970294	0.051984357044993	0.884498330870572	0.95662087733294
Merged-chr5-118097596-3	chr5	118097497	118097697	+	865.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172721, intron 5 of 10)	intron (NM_172721, intron 5 of 10)	57861.0	NM_172721	231672.0	Mm.221769	NM_172721	ENSMUSG00000032867	Fbxw8	4930438M06Rik|FBW6|FBW8|FBXO29|Fbx29	F-box and WD-40 domain protein 8	protein-coding	3.93584492328123	4.31368047195402	4.34115371358281	4.36314987858493	3.82892763570983	3.54884974035295	4.02079323819416	4.2589385034968	-0.827683264566409	0.0797054887595432	0.305742454430671
Merged-chr9-90061122-4	chr9	90061023	90061223	+	949.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 2 of 10)	intron (NM_001312649, intron 2 of 10)	6856.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	5.28322493120592	5.42097502931818	4.88601943132144	4.98868556913741	5.21235187488039	5.36808508685218	4.86296390746652	4.76075738943077	-0.152304166863981	0.659556803535998	0.858381366907205
Merged-chr13-21935479-3	chr13	21935369	21935569	+	939.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9625.0	NM_183014	193452.0	Mm.187446	NM_183014	ENSMUSG00000006720	Zfp184	4930500C15Rik	zinc finger protein 184 (Kruppel-like)	protein-coding	4.20399810178094	4.12481064912885	4.35502323301837	3.79759785857072	4.07175436659739	3.58869829129481	3.59063957054241	3.6633843549711	-1.03421807569664	0.0413386450622255	0.205851645227659
Merged-chr15-101223194-4	chr15	101223059	101223259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045328, intron 2 of 2)	MIR|SINE|MIR	962.0	NR_045326	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	5.59597762581137	5.28529030937527	5.39720987073045	5.83594843846488	5.96654635558969	5.5434450058403	5.30766585426399	5.83247283241287	0.227729411391218	0.463865055206141	0.745045824634848
Merged-chr16-24640476-4	chr16	24640371	24640571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-81384.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	5.38660690753145	5.7634737673681	5.19227527806155	5.54864464880639	5.55406983501902	5.75621373757394	5.39041231255615	5.44273080608556	0.0737346988177976	0.800241156253249	0.923003066841943
Merged-chr5-122268729-3	chr5	122268626	122268826	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4266.0	NM_001039153	654470.0	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	3.3510721077626	3.07888214177438	3.19427728529882	3.17703173982374	2.94130941705717	2.75492118459059	3.18170262958433	3.19251858256037	-0.69695180797296	0.251786645894644	0.563040416191876
Merged-chr2-151996477-4	chr2	151996358	151996558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027172)	promoter-TSS (NM_027172)	-53.0	NM_027172	69698.0	Mm.258262	NM_027172	ENSMUSG00000027463	Slc52a3	2310046K01Rik|RFT2	solute carrier protein family 52, member 3	protein-coding	6.01483180924433	5.96128010656412	5.63346069514188	5.79636571839636	5.87561852012953	5.78294514036837	5.85568509061759	6.09141261879432	0.0799705472469642	0.752004825151646	0.902329068825205
Merged-chr12-71048348-4	chr12	71048256	71048456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081195, intron 11 of 23)	intron (NM_001081195, intron 11 of 23)	32389.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	6.36880483514665	6.37342976449947	6.14231906979711	6.44148223373832	6.40794719859614	6.11812193018132	6.24792203853467	6.02961121406181	-0.188661259434588	0.419187544591334	0.712267072793635
Merged-chr9-118668719-3	chr9	118668611	118668811	+	847.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133721, exon 9 of 28)	exon (NM_133721, exon 9 of 28)	-42981.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.88816120584367	3.13280991512215	3.02210400191047	3.05815238743538	3.31451408592428	3.19374088877148	3.18758368340629	3.1418110062218	0.713904894762532	0.200959835634179	0.503099329649875
Merged-chr18-15140464-4	chr18	15140357	15140557	+	944.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134112, intron 1 of 4)	intron (NM_134112, intron 1 of 4)	10989.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	4.65205466865882	4.09646502303175	4.57601224440295	4.2433257335624	4.70193948309502	4.44343322896285	4.63058657219504	4.855208167196	0.604507948997455	0.116232327198173	0.377192724223727
Merged-chr7-6343776-3	chr7	6343708	6343908	+	894.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13374.0	NM_001033249	213011.0	Mm.333558	NM_001033249	ENSMUSG00000030443	Zfp583	BC056221|Znf583	zinc finger protein 583	protein-coding	3.10417203797183	3.15218594926483	3.16332254026126	3.25718923788803	3.13576722938378	3.08552288608561	3.2070440952756	3.04158752199794	-0.222498383287481	0.687883047798129	0.872545186536627
Merged-chr15-79403298-4	chr15	79403201	79403401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253817)	promoter-TSS (NM_001253817)	2.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	6.10059651611242	6.66166713781498	6.01243152275734	5.96012524889869	6.46221154134019	6.19039722524798	6.30444359345907	6.48371192431057	0.236050007794828	0.370028753146636	0.67422484451122
Merged-chr2-33452354-3	chr2	33452246	33452446	+	735.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027947, exon 4 of 4)	3' UTR (NM_027947, exon 4 of 4)	16186.0	NM_027947	71834.0	Mm.44186	NM_027947	ENSMUSG00000026788	Zbtb43	1700010E06Rik|Zfp297b|mKIAA0414	zinc finger and BTB domain containing 43	protein-coding	3.1122025362532	4.27105999453921	3.11250677004973	3.18465865599253	3.95873768387089	3.68790178074376	3.43824243624076	3.50856134646645	0.368833845969032	0.718713993849987	0.887667216205288
Merged-chr3-79852939-4	chr3	79852838	79853038	+	962.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-10276.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	5.87196312484818	5.46630924828595	5.9343912653109	6.31517342966099	5.10828925334318	4.82482355058265	5.09783736505036	5.56159306706959	-1.32265197296088	9.56897673265358e-05	0.0019576636600989
Merged-chr5-66114801-4	chr5	66114708	66114908	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-16629.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	4.33422597489538	4.68861233627665	4.14589599184344	3.95836423157017	4.5803473181487	4.70738400157614	4.17762585650929	4.03793863825597	0.23675421890275	0.599637853218945	0.826531820835107
Merged-chr6-37396310-2	chr6	37396210	37396410	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	45838.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	3.57030370272561	3.34107762267046	3.68636639159382	4.01378960390475	3.81802925717257	3.80535456215861	3.96387602938354	4.06419978254905	0.63261819986112	0.217846240652367	0.524758115787161
Merged-chr15-78754057-5	chr15	78753936	78754136	+	771.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19409.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	3.38573970287477	3.78676585403354	4.01263907376799	3.29858155150249	2.98129136652193	3.17671072868895	3.05250751140215	3.19926663082313	-2.0653795777255	0.000923000544152666	0.0126221432722848
Merged-chr15-74960940-4	chr15	74960844	74961044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5838.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	6.82674457380439	6.77580656753659	6.48516780561642	6.71718038826906	6.98764772945079	6.62699390273295	6.64951794317872	7.0917912473705	0.215244499997951	0.326684560697184	0.638189835571184
Merged-chr5-148746944-4	chr5	148746859	148747059	+	893.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44D|LTR|ERVK	5119.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	4.32789289350419	4.28271496568906	4.32855713287134	3.82383857590545	5.47113264363999	5.11243133052377	5.00694281626348	4.86891819719774	2.07399087879757	4.05806571459862e-08	1.90408081410294e-06
Merged-chr17-34309952-3	chr17	34309895	34310095	+	842.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010382, intron 2 of 5)	B3A|SINE|B2	4128.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	3.15775455126455	3.10514446681223	2.95472740323387	2.70111339881633	3.65615036525588	3.50669705816432	3.26535855396667	3.38685033638161	1.88715826867914	0.00126796176201992	0.0162704615573852
Merged-chr1-138126986-4	chr1	138126864	138127064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	48162.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	6.2131452949672	6.1961214037424	5.95188527738295	6.28049329750439	5.82542973246153	5.90966832053493	5.96535391293615	5.55715528230909	-0.555964699429599	0.0261300035244572	0.153003251140781
Merged-chr5-31767003-4	chr5	31766899	31767099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 3 of 11)	intron (NM_144541, intron 3 of 11)	68949.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	5.91842781621674	5.69989912950084	5.91947171695102	6.01414531213026	5.80321798378006	5.50099032457013	5.65252425191896	5.84842917079692	-0.301592169167454	0.245132694588811	0.556229359867632
Merged-chr5-140641012-4	chr5	140640856	140641056	+	884.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	8075.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	4.04995637389789	3.7141149937244	3.74701596877605	4.26283247036899	4.12875237513142	3.97676402296879	3.78804071223059	3.9547927190142	-0.0205576356394338	0.965119961022309	0.98769425730755
Merged-chr11-55448329-2	chr11	55448224	55448424	+	845.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 3 of 3)	L1Md_F2|LINE|L1	12884.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	3.74533563959587	3.84700617905786	3.49107268551044	3.06539678417935	3.69064335164888	3.42551349078836	3.47729652335931	3.30866858960136	-0.264091824939676	0.646342395967265	0.851295585787822
Merged-chr1-30873120-3	chr1	30873019	30873219	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9863.0	NM_001081080	213109.0	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik	PHD finger protein 3	protein-coding	5.82349800074538	5.82010694489479	6.02860365978213	6.03357612098112	5.75816013594556	6.04850911775604	6.01843453494986	6.16279299994785	0.0918107204788159	0.713734012441235	0.885468561919243
Merged-chr3-149088717-4	chr3	149088616	149088816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-134081.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	5.47128740312102	5.82451517437258	6.31253890173044	6.30895670755165	5.83782373373418	5.55492351176921	6.21233340008069	5.87747471988307	-0.226607030524495	0.465920366961586	0.746258906389711
Merged-chr6-83649220-3	chr6	83649112	83649312	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 4 of 6)	intron (NM_016751, intron 4 of 6)	6904.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	3.69069804949856	3.45069204243978	4.23654603217637	4.49838526581205	3.45797386253722	3.34266592779256	3.67645558990201	3.9902320214892	-1.13946250374078	0.0550413538564167	0.245202247996482
Merged-chr13-30657984-4	chr13	30657864	30658064	+	937.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2095.0	NM_001037955	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	4.49037415129887	4.05290363262044	4.81467437454691	4.22281170964979	4.51457167811212	4.24106487845834	4.47021550886544	4.77928700169842	0.227825787531406	0.586828332790778	0.818903628768642
Merged-chr7-100495911-4	chr7	100495830	100496030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011671, intron 2 of 7)	intron (NM_011671, intron 2 of 7)	2572.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	8.59651129833425	8.38209572489509	7.96306936309673	8.24176969922168	8.42696638067986	8.5310839252498	8.39264257823314	8.3532258519097	0.142195339704814	0.429839532778197	0.720635978674715
Merged-chr6-47562546-4	chr6	47562385	47562585	+	720.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146689, intron 3 of 19)	intron (NM_001146689, intron 3 of 19)	32545.0	NM_001146689	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	3.18174681043009	2.9154810788846	3.0193050101216	3.1888675112998	2.86945804646994	2.71864392770936	2.75634309652398	3.01772102741789	-1.05023089292447	0.096775996849822	0.340757663840822
Merged-chr7-55957999-4	chr7	55957883	55958083	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023647, intron 1 of 6)	intron (NM_023647, intron 1 of 6)	4510.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	5.02820161805936	4.89057742552843	4.92658153883995	5.01695873033021	5.25478960323421	4.87054107031447	4.90304256721069	4.7726463790951	0.0198820014354373	0.95175672896569	0.982835405595506
Merged-chr10-94576096-4	chr10	94576005	94576205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177026)	promoter-TSS (NM_177026)	-158.0	NM_177026	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	8.81416296566062	8.78994726067497	8.9938971852392	8.99126471573742	8.59538100264702	8.76119765968945	9.01454443386608	8.62056399744458	-0.181587054875836	0.269563556429723	0.581238507864386
Merged-chr14-70064457-2	chr14	70064357	70064557	+	984.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12988.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	2.80090192716157	2.93407681049877	2.80119176495002	2.82417582803278	3.00151003343454	2.97297022804089	2.91809093187166	3.09626417632138	0.690733903035642	0.239100687031639	0.549600505217823
Merged-chr10-86972157-4	chr10	86972054	86972254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 6 of 68)	LTR41B|LTR|ERVL	35788.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	5.60771661851572	5.86302769760435	5.40094907294974	5.99417086538113	5.84046478185453	5.54778770082921	5.93402276195979	5.8067573152049	0.0594738392875295	0.833194816956865	0.936237948428556
Merged-chr10-118052382-7	chr10	118052273	118052473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89414.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	6.50917773021946	6.59737917938864	7.18254852123151	6.79155776322932	6.50882691918081	6.72211289787245	6.82365575215966	6.77173607180767	-0.125990306860454	0.590356067456018	0.820919766532264
Merged-chr6-146616794-3	chr6	146616699	146616899	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026281, intron 6 of 11)	MTE2b|LTR|ERVL-MaLR	17793.0	NM_026281	67623.0	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	5.07171262891451	4.51383900902309	5.93697556597238	5.44576362659116	3.38515357948818	3.96954249074244	3.66895655093391	3.68110436983968	-4.64060247563955	4.93733772037037e-13	5.61397382744796e-11
Merged-chr9-45299432-4	chr9	45299318	45299518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19682.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	7.30218046130535	7.71703928394068	7.32464912838021	6.92771842433105	7.71777826830855	7.73162322437321	7.54320557695696	7.15107195012993	0.288038262494185	0.221843656365727	0.529921793961208
Merged-chr8-46765137-10	chr8	46765042	46765242	+	893.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	25397.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	5.31343854340688	4.96314737780439	4.84283649814	4.70532861534718	5.1267684988298	5.22531721185472	4.42696028366533	4.91348756458319	-0.0120538737913599	0.974490916322828	0.990918283588946
Merged-chr3-151748701-4	chr3	151748638	151748838	+	810.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133871, intron 2 of 7)	intron (NM_133871, intron 2 of 7)	1221.0	NM_133871	99899.0	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	3.89305508637598	3.65173761860877	3.98767148111051	3.71511074894298	4.07134384188257	3.74124853724923	4.01402971853614	3.78997855809381	0.312346448918597	0.49043128585208	0.762208967350056
Merged-chr11-69785017-4	chr11	69784913	69785113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029348)	TTS (NM_029348)	10924.0	NM_009601	11443.0	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding	6.12479959363073	6.09791934857067	5.84561909914317	6.21234647415203	5.87003815506511	5.84227480757196	5.97357601024939	5.66033993433158	-0.389066961523797	0.118119397268593	0.380170508884494
Merged-chr6-24530344-4	chr6	24530219	24530419	+	905.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080847, intron 1 of 9)	intron (NM_080847, intron 1 of 9)	2175.0	NM_080847	78910.0	Mm.160150	NM_080847	ENSMUSG00000029685	Asb15	4930400E23Rik|Asb-15	ankyrin repeat and SOCS box-containing 15	protein-coding	4.36683725396473	4.63931822050553	4.27714625069872	4.32493332961871	4.05601406205934	4.45210491934646	4.71896503148744	4.22695224770005	-0.0646279195616432	0.8751309150722	0.953043809729561
Merged-chr6-3487570-4	chr6	3487456	3487656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178899, intron 1 of 9)	intron (NM_178899, intron 1 of 9)	6942.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	6.74640053978689	6.7399874041175	7.01223308671568	7.00531052858123	7.00447926190411	6.84872266865598	6.52364136333503	6.77189948002398	-0.115668244833371	0.591062373066781	0.821418854067929
Merged-chr14-51083451-4	chr14	51083365	51083565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7612.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	6.22697696217073	6.47160656005071	5.71182183642201	6.00697723874236	6.59197427838416	6.5655485054722	6.07538120163515	6.16440765431433	0.364347002872856	0.185934050570268	0.483870824275444
Merged-chr12-44167173-2	chr12	44167073	44167273	+	863.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42895.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	3.016162044265	3.11058195032432	2.94151616853503	3.1961879812475	3.13956353484095	3.81396226142369	3.62980560735113	3.55063616312479	1.66337596544575	0.00532638181204443	0.0498067206247605
Merged-chr13-55464439-6	chr13	55464411	55464611	+	815.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001030296, intron 1 of 2)	CpG	244.0	NM_001030296	432763.0	Mm.315457	NM_001030296	ENSMUSG00000034686	Prr7	XM_484263	proline rich 7 (synaptic)	protein-coding	3.25884549336914	3.25485647888432	3.48089038878668	3.37254126806478	3.47842455091864	3.17366063877277	3.1867912374571	3.57647102722692	0.0888964972749821	0.869062663387784	0.950890741040292
Merged-chr6-108782030-4	chr6	108781894	108782094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-1065.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	7.37910711747083	7.12008268083978	7.21803634162545	7.49514728285348	7.17052952395345	6.84867870212179	6.95780338992827	7.0138319365151	-0.42108935397567	0.0348373012472538	0.184774569815636
Merged-chr5-122284758-2	chr5	122284658	122284858	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177242, exon 1 of 6)	exon (NM_177242, exon 1 of 6)	360.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	4.36060811391474	4.17764850208038	4.48209621830329	3.94968073419431	4.41507186250294	4.2569161587591	4.25490971564393	4.51689755481522	0.311411192544582	0.444363901390629	0.730774412852539
Merged-chr5-64243129-2	chr5	64243029	64243229	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	12772.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	2.99858953574227	3.09628849660185	3.11586186497229	2.91139174040524	2.93964275878724	3.04474671199439	3.15742466913085	2.80025197458429	-0.155009803113247	0.793894758029056	0.92022175040272
Merged-chr8-94012184-4	chr8	94012103	94012303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011787, intron 1 of 13)	CpG	437.0	NM_011787	23802.0	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	5.5717637806091	5.56102221038984	6.09321860986127	5.78793946847971	5.85152379119458	5.93866250527532	6.11843405698731	6.02936981506042	0.343440598532131	0.192508241481698	0.492157893412656
Merged-chr6-106441031-2	chr6	106440926	106441126	+	572.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001109749, intron 8 of 25)	intron (NM_001109749, intron 8 of 25)	308011.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	3.16339931914289	2.79855977397059	3.16387711785087	2.84631522853972	2.84095870421451	2.87071651299358	2.75679942897654	2.55001199288147	-1.11608293337612	0.100922177150741	0.348715516864689
Merged-chr13-21479168-4	chr13	21479063	21479263	+	949.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039115, exon 1 of 3)	exon (NM_001039115, exon 1 of 3)	314.0	NM_001039115	544922.0	Mm.441300	NM_001039115	ENSMUSG00000054931	Zkscan4	AI841875|Gm11272	zinc finger with KRAB and SCAN domains 4	protein-coding	6.05839103586051	5.52784701966431	5.76141616250757	5.99495334300134	4.90940431889403	4.94710620520301	5.11036467343646	5.42543908819715	-1.31679722490459	2.20419331663116e-05	0.000555174366894868
Merged-chr15-41830871-4	chr15	41830775	41830975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130164)	promoter-TSS (NM_001130164)	-83.0	NM_001130164	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	7.85061615524007	7.94253111171934	8.12378555435966	8.35264287333659	7.9803071960441	7.78761492049214	8.13881372722693	7.6228068179119	-0.245111792587386	0.217753266592946	0.524691528498242
Merged-chr12-105032462-4	chr12	105032360	105032560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003145)	promoter-TSS (NR_003145)	-158.0	NM_028419	73046.0	Mm.29128	NM_028419	ENSMUSG00000021102	Glrx5	-	glutaredoxin 5	protein-coding	9.30279152572528	9.61550456686983	9.54202171739147	9.49794285069857	9.54581849739787	9.72769194255784	9.63858950468809	9.47845762633134	0.127982952002388	0.379645306384209	0.682157007046657
Merged-chr18-36493706-3	chr18	36493614	36493814	+	899.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22091.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	3.50037003412863	3.58381155636792	3.3319654734733	3.87238505620832	3.43592924927364	3.38208065041799	3.32028945662077	3.13686314712983	-0.939433868394108	0.0894974319408919	0.326643035069578
Merged-chr13-33084365-4	chr13	33084227	33084427	+	812.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173052, intron 1 of 6)	intron (NM_173052, intron 1 of 6)	224.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	3.44973664212337	3.27934251690553	3.32852639535414	3.40979115813542	3.72645371663515	3.67857157888553	3.74193185711004	3.61170050206713	1.03823107524192	0.0318476402398361	0.174188042464369
Merged-chr8-31187376-5	chr8	31187331	31187531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286424)	promoter-TSS (NM_001286424)	100.0	NM_001286425	171167.0	Mm.334477	NM_134161	ENSMUSG00000046152	Fut10	fuc-TX|fut10A	fucosyltransferase 10	protein-coding	5.01090299747703	5.61541700020514	5.97243800076464	5.09866917417605	5.33713709973903	5.07345147719998	5.35318166257207	5.40519053060117	-0.31085682070344	0.376759917844561	0.679489046349051
Merged-chr4-139761405-3	chr4	139761295	139761495	+	874.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011039, intron 7 of 8)	intron (NM_011039, intron 7 of 8)	71573.0	NM_011039	18509.0	Mm.218760	NM_011039	ENSMUSG00000028736	Pax7	Pax-7	paired box 7	protein-coding	3.10662991660151	2.85952753802799	2.94127855654562	2.37340256686797	4.07172377734173	4.2283656192643	4.21667823420282	3.88038574138639	6.18225777413752	1.2354220368363e-06	4.24402051930363e-05
Merged-chr8-70273114-4	chr8	70273015	70273215	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9884.0	NM_011984	26558.0	Mm.388127	NM_011984	ENSMUSG00000003573	Homer3	AW146114	homer scaffolding protein 3	protein-coding	5.12083416254231	5.51117528833	5.3228230999163	5.62578836634104	5.33725161732143	5.0676836099513	5.73418478129266	5.71513395479595	0.118043876671225	0.711867986761951	0.884679048655813
Merged-chr1-135427597-4	chr1	135427490	135427690	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357578, intron 1 of 24)	intron (NM_001357578, intron 1 of 24)	2901.0	NM_153774	226432.0	Mm.271642	NM_153774	ENSMUSG00000041879	Ipo9	0710008K06Rik|AI845704|C78347|Imp9|Ranbp9	importin 9	protein-coding	4.71203229952875	4.50787257929061	5.01564882609393	4.63830737412009	4.58141845746842	4.54563516265787	4.76377325041332	4.81883461806513	-0.0908138580675417	0.799034162191713	0.922381586635156
Merged-chr4-101223297-4	chr4	101223199	101223399	+	877.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 1 of 24)	intron (NM_146145, intron 1 of 24)	41983.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	4.25419657889217	4.34668589662506	4.38791798682376	4.15327940310123	4.51555571664807	4.6774288282514	4.32552052837269	4.10421941036869	0.34313912036015	0.38438627033785	0.685951673034199
Merged-chr16-36711976-4	chr16	36711901	36712101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 3 of 7)	intron (NM_001285788, intron 3 of 7)	18023.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	8.45092075734062	8.56884148351045	8.07596263639354	8.33835668755212	8.11787022730589	8.24026071499486	8.26175186855864	8.10988294232242	-0.241405415576895	0.158589385148271	0.445611631354365
Merged-chr4-40147693-4	chr4	40147607	40147807	+	767.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 1 of 20)	ORR1C1|LTR|ERVL-MaLR	4442.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	4.11698024893245	3.64160606946458	3.93497132280175	3.63448441601982	4.13172670090105	3.95438691202638	3.86873465470055	4.07179949843299	0.503966272574836	0.267317862117205	0.579017883652828
Merged-chr3-88521914-4	chr3	88521817	88522017	+	972.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10478.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	4.00480476638592	3.75378932677288	4.36236375794357	4.05998965264793	3.71274940187668	4.02286747493271	4.45193234507729	4.47089885981711	0.350670349546246	0.465159902742426	0.745777712133849
Merged-chr16-30123462-4	chr16	30123364	30123564	+	902.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME2|LINE|L1	58107.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	4.66046067958488	5.20254751535348	5.18264444643589	4.97576087413321	4.71854242413875	4.65938570281653	4.83656304428768	4.96219729409207	-0.45270818984334	0.185695326697684	0.483585287292957
Merged-chr14-31183870-4	chr14	31183803	31184003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347583, exon 14 of 14)	3' UTR (NM_001347583, exon 14 of 14)	-15262.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	6.24982727417566	6.19363010192123	6.25094133490678	6.40032341163495	5.5516794820288	5.80827355695031	5.38448539386453	5.68090034332135	-1.07954280752702	1.6945639030434e-05	0.000441336860792996
Merged-chr2-102873581-3	chr2	102873486	102873686	+	789.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	28079.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.16976399724375	3.95609607711714	4.51528836614985	4.51969385383362	3.82100883143241	4.052267812859	3.85894046589499	3.63094607246997	-1.26632612647053	0.00633370932944177	0.0564360318268059
Merged-chr10-58446420-4	chr10	58446330	58446530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011240)	promoter-TSS (NM_011240)	-422.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	6.54411758696795	6.63359561412405	6.42061528838757	6.98885838798786	7.07144516916632	6.63540033833058	6.92513283282159	6.69962658437153	0.238842838594524	0.313534113934528	0.625477710082561
Merged-chr12-78225904-3	chr12	78225814	78226014	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145965)	promoter-TSS (NM_145965)	-741.0	NM_172952	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	6.54380063172518	6.73007763244354	6.75528855358185	6.48329466303446	6.62683278347104	6.40933225803703	6.8264327344256	6.28775833157891	-0.0974706827066619	0.669214499845364	0.863427252946745
Merged-chr2-52982790-4	chr2	52982735	52982935	+	923.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	B4A|SINE|B4	124967.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.68830183708541	3.8319681130213	3.99443876076594	3.77908680495481	3.76437872148598	3.9189944697212	4.02078816672168	3.94587435070559	0.246276395760097	0.576444455733656	0.813520896079505
Merged-chr17-87107367-4	chr17	87107268	87107468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019654)	promoter-TSS (NM_019654)	-311.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	8.18611266648201	8.55253408305962	8.34111056716174	8.33094717853256	8.58120395389005	8.70469551895181	8.8099717359139	8.35223596451545	0.330339307009708	0.0559814964591999	0.247627936288421
Merged-chr13-41607813-4	chr13	41607706	41607906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163572, intron 1 of 2)	intron (NM_001163572, intron 1 of 2)	1590.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	5.57543260214909	5.56144730389794	5.57640171161496	5.61050283862032	5.3992306754237	5.49093894218799	5.74125322461938	5.43369261483228	-0.111262603631022	0.679148623419038	0.868317902828816
Merged-chr6-115480473-4	chr6	115480378	115480578	+	989.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 7 of 7)	intron (NM_001308354, intron 7 of 7)	58412.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	5.20439896740663	5.23933333064191	4.91981790410472	5.59219154737676	5.05249009853448	5.34749777489246	5.75753909781914	5.3832946230458	0.226134722317062	0.508496715619837	0.773535236506654
Merged-chr5-138995014-4	chr5	138994906	138995106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008808)	promoter-TSS (NM_008808)	-53.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	5.85034856962361	5.57607971414816	5.82784987764907	5.91137789889095	5.73091709346724	6.00271071178124	5.97407421632898	5.9152114409902	0.157370704909947	0.536148508899992	0.790213033830861
Merged-chr6-94536509-4	chr6	94536414	94536614	+	934.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026255, intron 5 of 9)	intron (NM_026255, intron 5 of 9)	36200.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	4.04900882606149	4.1219044349446	4.50973399119428	4.73877439080406	4.03268238764692	3.86729610281923	4.82208082998583	4.61764923477468	0.00530442035650973	0.991485362716725	0.996745793587504
Merged-chr1-42851214-4	chr1	42851131	42851331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023514)	promoter-TSS (NM_023514)	-2.0	NM_023514	69527.0	Mm.252982	NM_023514	ENSMUSG00000060679	Mrps9	2310002A08Rik|AW322516|Mrp-S9|S9mt|mg637	mitochondrial ribosomal protein S9	protein-coding	8.57008340680656	8.44555454375123	8.38612331329836	8.62341649642239	8.46905768464364	8.50831432005424	8.71322009220124	8.58443015666789	0.0713750525925261	0.644831548375791	0.850540242207308
Merged-chr12-112875762-4	chr12	112875671	112875871	+	952.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14855.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	4.5532333727773	4.97691870730952	4.45889079257402	4.94635029911224	5.07548930211148	4.97762205334022	5.01970376172785	4.90931763527374	0.451450971688012	0.19557373539831	0.49638795965428
Merged-chr2-163675902-2	chr2	163675802	163676002	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 2 of 4)	intron (NM_001039390, intron 2 of 4)	17444.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	3.5339606159615	3.51041669277333	3.4137407944908	3.74224121505813	3.72997265050236	3.96138119400534	3.57693917334124	3.69472211906791	0.539140485439737	0.272648931718437	0.58409743796508
Merged-chr5-122702392-4	chr5	122702300	122702500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5144.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	7.24094653889156	7.14505516705192	7.4887162224959	7.34550302055476	7.05408305113655	7.34063799979633	7.16177571443488	7.447237231921	-0.078481127728856	0.688026836688723	0.872602637190276
Merged-chr8-78509796-4	chr8	78509693	78509893	+	911.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009033)	promoter-TSS (NM_009033)	465.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	4.31295943029035	3.79145592060923	4.43080614080065	4.11080745009339	4.29369730887408	4.00214878368788	3.97287364095411	4.35108298869952	-0.0137317177916206	0.975229370110092	0.991193161400585
Merged-chr10-118643731-2	chr10	118643631	118643831	+	795.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-87206.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	2.95701013223871	2.99735319486641	3.09415014117677	3.15160861866173	3.11950184167933	3.27092592834293	3.64648209569554	3.48312456932839	1.22511897540897	0.033293006825345	0.179310149275214
Merged-chr7-143461122-4	chr7	143461030	143461230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161624)	promoter-TSS (NM_001161624)	-80.0	NM_001161624	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	7.29949011308577	7.06601079898673	7.13865005429697	7.19399237026989	7.17448055346572	7.01849124967666	7.51913564699037	6.76039330611385	-0.0357675875515753	0.870206248139491	0.951261027372314
Merged-chr17-44419128-3	chr17	44419025	44419225	+	848.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	230553.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	3.94953730095328	4.03197797162382	4.36421586588567	3.77031551181999	3.96571116858222	3.73614688398164	3.72340781467834	3.99580015066761	-0.472240349471908	0.313002435906797	0.624907449383203
Merged-chr4-148558584-5	chr4	148558498	148558698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355489)	promoter-TSS (NM_001355489)	-115.0	NM_001355489	50912.0	Mm.266635	NM_016699	ENSMUSG00000017264	Exosc10	PM-Scl|PM/Scl-100|Pmscl2|RRP6|p2|p3|p4	exosome component 10	protein-coding	4.77624779317462	4.89174596321942	5.3705341481326	4.90245673203872	5.33350673696174	5.51556715545665	5.22722698054114	5.706714345332	0.8383586115722	0.00901789608788063	0.0732494380508109
Merged-chr9-56995640-4	chr9	56995510	56995710	+	829.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019651, exon 1 of 13)	exon (NM_019651, exon 1 of 13)	642.0	NM_019651	56294.0	Mm.325643	NM_019651	ENSMUSG00000032290	Ptpn9	MEG2	protein tyrosine phosphatase, non-receptor type 9	protein-coding	3.9717172649096	4.237688752019	3.452034328085	3.63325122811106	3.72360682293376	4.23463929610522	3.85661739625605	4.10566837974943	0.368405251094707	0.469051785111313	0.748076114999735
Merged-chr1-171411747-1	chr1	171411647	171411847	+	1000.0	f1_balb.idr	promoter-TSS (NM_009480)	promoter-TSS (NM_009480)	66.0	NM_009480	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	3.96261179833762	3.80183306133543	4.29845616432733	3.63137917519592	3.65253157865011	3.62999273020393	3.79509285341397	4.33167145631901	-0.155012557636578	0.762678111646437	0.907011913026374
Merged-chr2-164785891-4	chr2	164785786	164785986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133924)	promoter-TSS (NM_133924)	-135.0	NM_133924	101113.0	Mm.295647	NM_133924	ENSMUSG00000050373	Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding	6.93751568823194	6.89720306377216	6.77546306789193	6.96600670934073	6.7687616203463	6.92276510536269	6.91629118430429	6.81345295563161	-0.0691582707581471	0.719915318003469	0.888028373825666
Merged-chr1-91251585-4	chr1	91251496	91251696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355764, intron 1 of 10)	intron (NM_001355764, intron 1 of 10)	1030.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	7.91067206534916	8.38098467780912	8.35847758969662	7.93915198807139	8.01596590830528	8.10427013623707	8.07030688624218	7.79927367070165	-0.20552756469963	0.280889679916606	0.593066164178456
Merged-chr2-168128673-2	chr2	168128573	168128773	+	778.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25840.0	NR_040327	77017.0	Mm.407822	NR_040327	ENSMUSG00000087648	E130018N17Rik	-	RIKEN cDNA E130018N17 gene	ncRNA	3.18210444447596	3.12245670919308	2.99345814613637	2.89466608281744	3.56687077728042	3.23400986711964	3.1113147931024	3.23814455421719	1.0099180783271	0.0753280646308094	0.296394489350823
Merged-chr7-107620295-4	chr7	107620160	107620360	+	912.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163557, intron 1 of 25)	MLT1-int|LTR|ERVL-MaLR	13416.0	NM_001163557	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	4.15950706772951	3.86345361723767	3.80967236324443	4.16637628874332	4.43445937034626	4.37177164655867	3.85061757409639	3.7491290292353	0.329992428893677	0.488823775942264	0.761462119491523
Merged-chr17-28691267-4	chr17	28691170	28691370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011951)	promoter-TSS (NM_011951)	-72.0	NM_001168508	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	8.07565503932553	8.24886573245662	8.08347092878607	7.75088579417464	8.29464652921798	8.52294559160119	8.05142200381701	8.00483872168358	0.242342842332235	0.216335795455506	0.522871496934719
Merged-chr1-165604383-4	chr1	165604295	165604495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 4 of 5)	intron (NM_001083897, intron 4 of 5)	30146.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	5.72363018911781	5.87019370178927	5.80092203620204	6.40522514115674	5.76138996992851	5.61261424534304	6.13147183784264	5.91446994908413	-0.214335208872411	0.466608369391286	0.746420287776482
Merged-chr19-21461410-4	chr19	21461284	21461484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010266, intron 1 of 13)	L1MB5|LINE|L1	11277.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	6.64677742000845	6.60312863985481	6.88014274019178	6.98709263870861	6.29893649950665	6.33814615340541	6.34873437893509	6.39523592239645	-0.664628097603503	0.00234112690527554	0.0264087277322675
Merged-chr11-83443040-2	chr11	83442940	83443140	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080453, intron 7 of 7)	intron (NM_080453, intron 7 of 7)	5346.0	NM_025492	66330.0	Mm.44800	NM_025492	ENSMUSG00000035085	1700020L24Rik	-	RIKEN cDNA 1700020L24 gene	protein-coding	3.54116555461095	3.88274091866467	3.1896048888103	3.28033157916556	3.42425389837557	3.36841925884656	3.36474781821199	3.37563267185697	-0.391592362539198	0.480498499580552	0.755982465057009
Merged-chr2-150894751-4	chr2	150894626	150894826	+	832.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	10005.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	3.98381817374009	3.69074612098681	3.72335634136009	3.74778995593644	4.42231749301117	4.00838474056449	3.76502330580698	4.02835127596425	0.826796928752828	0.0716432215305245	0.287473525301382
Merged-chr8-35498480-4	chr8	35498372	35498572	+	964.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-2939.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	5.24923012191882	4.60711341850135	4.77891264701955	4.60269865694899	4.72690012587375	5.36442865364427	5.33033747175042	5.09753560641493	0.625089256666475	0.0901384014902177	0.327810749114653
Merged-chr3-36854226-4	chr3	36854115	36854315	+	903.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8891.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	5.32660811898478	4.74346896675413	4.90693812588036	4.96917007004622	4.25187955378381	4.3488422408727	4.45391958191616	4.799284281455	-1.12487871093692	0.00321631147204003	0.0337030583812239
Merged-chr4-103285173-3	chr4	103285062	103285262	+	849.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027612, intron 1 of 8)	intron (NM_027612, intron 1 of 8)	5701.0	NM_027612	70941.0	Mm.158501	NM_027612	ENSMUSG00000028520	4921539E11Rik	-	RIKEN cDNA 4921539E11 gene	protein-coding	3.48918719302077	3.38783190898856	3.28410230622982	3.65967891837259	2.98621923188827	3.00595704438319	3.02986035497352	2.96909950841463	-1.94975927288077	0.00126072716480421	0.0161980683869312
Merged-chr13-101697019-4	chr13	101696914	101697114	+	986.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-4384.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	5.00802788291072	5.35059809870667	5.23593362041068	5.01875112269986	5.35484700841073	5.03600971080408	4.87464402100549	5.07453870259726	-0.0861353392347755	0.788956184653778	0.918274700744505
Merged-chr2-130730943-4	chr2	130730872	130731072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029432, intron 27 of 36)	intron (NM_029432, intron 27 of 36)	-33453.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	8.2336489809277	8.35661656112298	8.28051811116376	8.28439472112112	8.14552359233231	8.06768512517707	8.23041401712375	8.03561755420946	-0.212848714442794	0.16271965366892	0.452200922519815
Merged-chr8-25602815-6	chr8	25602733	25602933	+	872.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001735, intron 1 of 9)	intron (NM_001001735, intron 1 of 9)	549.0	NM_001308482	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	3.49803805688852	3.88223069997114	3.61936189262603	3.65299346325018	3.72965828428215	3.84972201523776	3.81597524194974	4.09420561636323	0.594663065849935	0.202316824330995	0.504746975435225
Merged-chr2-28796517-3	chr2	28796413	28796613	+	905.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033874, intron 11 of 12)	intron (NM_001033874, intron 11 of 12)	43847.0	NM_172977	269252.0	Mm.26043	NM_172977	ENSMUSG00000035666	Gtf3c4	5330400C03|AI426938|AU014771|AU017413|KAT12|TFIIIC90	general transcription factor IIIC, polypeptide 4	protein-coding	4.90001596366821	4.64542324605118	4.90086874662337	4.72324831757193	4.19219560949312	4.08999720918819	4.17350043794307	4.28941143349068	-1.40680342490832	0.000246360068658984	0.00430857170532954
Merged-chr14-48446302-4	chr14	48446157	48446357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172600)	promoter-TSS (NM_172600)	-95.0	NM_172600	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	7.26275556384959	7.31570991953663	7.86958796634291	7.15097924679894	7.23674538484775	7.505465525751	7.3818747103502	7.47963042334746	-0.0287079806961503	0.89605518034895	0.960994089571403
Merged-chr8-70426721-4	chr8	70426633	70426833	+	982.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004062, intron 1 of 13)	intron (NM_001004062, intron 1 of 13)	12840.0	NM_001004062	382056.0	Mm.227767	NM_001004062	ENSMUSG00000003575	Crtc1	AI413414|Mect1|R74955|TORC1|mKIAA0616	CREB regulated transcription coactivator 1	protein-coding	3.75822837074306	4.15472429943133	4.49978966471249	4.38660966014346	3.92991551763169	4.06892729215579	4.58517797778506	4.73554656551811	0.333916852324124	0.491600929253471	0.763110362091264
Merged-chr11-30291281-1	chr11	30291181	30291381	+	713.5	f0_balb.idr	Intergenic	Intergenic	-71509.0	NM_175836	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	2.99962178866917	3.21188647137746	3.00006656468908	3.11367747827495	2.40299844558695	2.48964857331432	2.46363358766226	2.621189527452	-3.96083706094645	5.64917085929956e-05	0.00125656978935651
Merged-chr17-46248034-4	chr17	46247934	46248134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145353)	promoter-TSS (NM_145353)	11.0	NM_009085	20016.0	Mm.3458	NM_009085	ENSMUSG00000067148	Polr1c	40kDa|AA409007|AA959927|AL024089|Polr1e|RPA40|Rpo1-1	polymerase (RNA) I polypeptide C	protein-coding	7.2040784676339	7.3113261403792	6.50274514129905	6.95129051896848	7.29010753740797	6.98038635031027	7.19045904500253	7.09948989886495	0.165674183104554	0.473093521767321	0.751053562324356
Merged-chr8-105636822-4	chr8	105636695	105636895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358924, intron 1 of 11)	CpG	257.0	NM_001358924	13018.0	Mm.269474	NM_181322	ENSMUSG00000005698	Ctcf	AW108038	CCCTC-binding factor	protein-coding	6.73246997964529	6.55931470723047	6.46041403453195	6.62916659032606	6.84271959899503	7.04584454599868	6.79618205668157	6.47360764433308	0.291736679909861	0.18154964757684	0.478232668725227
Merged-chr17-8802384-4	chr17	8802277	8802477	+	986.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011866, intron 1 of 21)	CpG	632.0	NM_011866	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	5.67827572133785	5.56974604878186	5.65633895326012	5.5182605431332	4.88557561743704	5.14523924350839	5.22352248213848	5.03831592145546	-0.967808538961395	0.000927721435007181	0.0126623746926896
Merged-chr1-174031870-4	chr1	174031768	174031968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172648)	promoter-TSS (NM_172648)	-113.0	NM_172648	226695.0	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	5.57622170684326	5.79122011211714	5.5196639401548	5.49669796063736	5.97714231634253	6.29017542793887	5.60378162975183	5.68100196543175	0.522184524980709	0.0650050397173012	0.27123062965651
Merged-chr17-56584853-4	chr17	56584749	56584949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355463)	promoter-TSS (NM_001355463)	-133.0	NM_001163300	224903.0	Mm.255066	NM_001163300	ENSMUSG00000071054	Safb	3110021E02Rik|5330423C17Rik|AU018122|D18386|E130307D12|HAP|HET|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding	8.73203113440143	9.02525673035673	8.59345624732253	8.32684297109579	8.95824877428523	9.1268350546464	8.92282421792892	8.91389362581559	0.36422962868908	0.0500599000446301	0.231939105426913
Merged-chr2-155107461-4	chr2	155107348	155107548	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-7369.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	5.32142525796307	5.16850131174679	4.95123543322177	4.38708389036596	5.0831318281984	5.16134192765087	4.99658193721934	4.98327466121779	0.134625844622492	0.717724951047175	0.887172552976293
Merged-chr8-125054068-4	chr8	125053958	125054158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174853)	promoter-TSS (NM_174853)	-137.0	NM_174853	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	6.13632288191605	5.82803890917852	6.09873090873067	5.89182150088178	5.69922225464629	5.96476841087206	5.94447888460066	5.90401438029732	-0.177839095234026	0.476735444463071	0.753110052062842
Merged-chr3-133626818-4	chr3	133626689	133626889	+	960.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82399.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	4.83157101873559	5.2517646418732	4.68296478211782	4.46390645949558	4.38074138806674	4.60140561236084	4.44817912318609	5.05414282569924	-0.399887058313682	0.329789107636265	0.641140001978578
Merged-chr11-98773923-4	chr11	98773826	98774026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145434, intron 1 of 7)	CpG	1451.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	8.63617138986884	9.05607898039211	8.89143371946058	8.45174044244332	8.91283014155498	9.17097393855649	8.73335076766031	8.81618559784673	0.176852949676306	0.351987982514479	0.659209734772345
Merged-chr2-74673171-3	chr2	74673040	74673240	+	694.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1873.0	NM_008274	15432.0	Mm.57124	NM_008274	ENSMUSG00000001823	Hoxd12	Hox-4.7|Hox-5.6	homeobox D12	protein-coding	3.44354202857795	3.63806523000721	3.65821112862621	3.39229632484034	3.42497058697573	3.55963822004907	3.24645838697416	3.7956304638456	-0.0415126987522925	0.936349215227071	0.97693414934542
Merged-chr2-165326567-4	chr2	165326462	165326662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207706)	promoter-TSS (NM_207706)	-83.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	8.42197552927221	8.46435429647912	8.34448411750548	8.28952665849441	8.35093524000852	8.21622100360288	8.41431007940814	8.26069784021986	-0.0813292400411065	0.59351861742179	0.82285233379688
Merged-chr14-99899718-2	chr14	99899618	99899818	+	947.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010636, intron 6 of 6)	intron (NM_010636, intron 6 of 6)	250078.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	3.52299843431968	3.49987161866942	3.40268665468006	3.57928766313745	3.86085083477271	3.69673981537369	3.89969932485277	3.57799048648333	0.80118035227109	0.0933302121453716	0.334150960948329
Merged-chr3-84440098-3	chr3	84440005	84440205	+	718.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	39386.0	NM_001205355	229474.0	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	3.2944814368249	3.27944046307614	3.60452043736182	3.8531373962228	3.08546707588342	3.21807745569193	3.16202372400168	3.03683661662446	-1.57028759340049	0.00809243574413228	0.067758085381907
Merged-chr8-120119150-4	chr8	120119063	120119263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	5011.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	5.81751133079291	5.71164376440155	5.83996876433647	6.08412756721741	5.37811240247183	4.81627913411851	5.19636566909708	5.14759377935871	-1.24189800655381	4.12945057564382e-05	0.000958363751300135
Merged-chr9-96392113-4	chr9	96392040	96392240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27709.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	8.19750670804488	8.46443216037489	8.35907575429302	8.26994076033017	8.3139667505623	8.2874980166475	8.47616464728421	8.53335508075312	0.101306684898238	0.524346338856408	0.782865729438594
Merged-chr19-33380539-3	chr19	33380436	33380636	+	838.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146342, intron 2 of 4)	intron (NM_001146342, intron 2 of 4)	11759.0	NM_001167818	67795.0	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding	4.08878861023016	3.66588582901012	4.13014494214278	3.72584052507906	3.51028705537083	3.93468980234445	3.6349952893877	3.81078488379161	-0.538270147583812	0.270890922479716	0.582670886352706
Merged-chr2-148857153-4	chr2	148857056	148857256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6222.0	NM_029960	77705.0	Mm.159975	NM_029960	ENSMUSG00000027446	9230104L09Rik	mCST E2	RIKEN cDNA 9230104L09 gene	protein-coding	5.88742860629627	5.96955767245443	6.06220439889049	6.44432865223348	5.76318287622779	5.80972330410865	5.8113413212472	5.78762053489087	-0.540636371219735	0.0406443174135031	0.203786568178611
Merged-chr6-124260757-4	chr6	124260659	124260859	+	639.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28975.0	NM_001104642	232367.0	Mm.469872	NM_001104642	ENSMUSG00000072778	Vmn2r27	EG232367	vomeronasal 2, receptor27	protein-coding	3.83982097765499	3.92803087004539	3.68127675692515	3.34088970092208	4.2395328917143	4.15144617937562	3.60976355040016	3.43307368971544	0.550948494007504	0.311005535546965	0.62308246654072
Merged-chr16-56062232-4	chr16	56062109	56062309	+	876.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360073, intron 1 of 24)	intron (NM_001360073, intron 1 of 24)	4679.0	NM_001360073	66315.0	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	4.06361450787745	4.06729194754849	4.28445270441822	4.31960062809261	3.94131486791954	3.91846911651111	4.22445469484748	4.10904362534697	-0.382948832766895	0.360592275679112	0.665919212407671
Merged-chr15-64082413-3	chr15	64082300	64082500	+	902.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	-21952.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.19427494612743	3.16687838132141	4.08839961180393	3.7128946630514	3.55162356447758	3.50908487022642	3.65341776996411	3.39115316019012	-0.215025115888251	0.717784997223607	0.887185148249273
Merged-chr10-50740275-4	chr10	50740171	50740371	+	813.770874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 30 of 41)	intron (NM_198007, intron 30 of 41)	147602.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	4.44236943994124	4.17785537394778	4.48092516975862	4.08184449879984	4.00652948853366	4.31537372688438	4.21597377045586	4.18611281252835	-0.284663306685897	0.48937779795698	0.76169179992188
Merged-chr5-30887458-4	chr5	30887340	30887540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1412.0	NM_174849	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	5.86464694047011	5.69233528407327	5.40035128529107	5.76864751299123	5.86855776480711	5.94588994862926	6.10155356589214	5.97111471313502	0.437955709256213	0.0881516855296254	0.323918465547202
Merged-chr11-4848828-7	chr11	4848758	4848958	+	970.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010898, intron 1 of 15)	CpG	686.0	NM_001252250	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	4.73428606050159	4.81498757640153	4.4804392111881	4.6248067669606	4.89390200689413	5.17969704209103	4.82385039837577	4.91321437807431	0.594082112647553	0.0763989647778492	0.298608407545507
Merged-chr15-103366643-4	chr15	103366520	103366720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010577, exon 1 of 30)	5' UTR (NM_010577, exon 1 of 30)	171.0	NM_010577	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	7.14144507120228	7.39843480531141	7.06183750600656	6.33724416127679	7.04404740607976	7.40554614177021	7.00213781491387	6.60216449136091	0.0130808474469993	0.963077137272276	0.986806397465601
Merged-chr7-27508181-4	chr7	27508086	27508286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019412, intron 5 of 5)	CpG-12884	8862.0	NM_019412	19153.0	Mm.10119	NM_019412	ENSMUSG00000053198	Prx	L-Periaxin	periaxin	protein-coding	7.47625110519315	7.49974859616424	7.24227860969308	7.29301158997964	7.54089109767163	7.73570578443508	7.54739633549167	7.21453757678415	0.189922150539755	0.324236538558417	0.635798026889158
Merged-chr6-89280760-4	chr6	89280710	89280910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131021, intron 1 of 3)	intron (NR_131021, intron 1 of 3)	4915.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	8.36199575507134	8.45457910140007	8.24598934760727	8.46194498977675	8.1534683363087	8.11298312336685	8.63282336002022	8.24058195628501	-0.108668620130891	0.544367788894616	0.795184841840149
Merged-chr9-61349934-4	chr9	61349826	61350026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-22440.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	8.01830370540306	8.26325521370753	7.85792035734459	7.85720323411628	7.68700934257862	8.01274765970553	8.00082875525416	7.79110133822295	-0.171194594494346	0.354744203080622	0.661365305978239
Merged-chr3-96562614-4	chr3	96562523	96562723	+	821.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023719)	TTS (NM_023719)	4178.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	3.59865968858515	3.98174551018957	3.48240078752778	3.32256527976499	3.66012696185749	3.53626749476328	3.7886285178848	3.89468336829896	0.340156880198951	0.508532121230874	0.773535236506654
Merged-chr4-63151843-1	chr4	63151743	63151943	+	546.0	f0_balb.idr	intron (NM_007443, intron 2 of 9)	intron (NM_007443, intron 2 of 9)	2329.0	NM_007443	11699.0	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	3.15413177064987	3.01644585847807	2.94223525719563	2.67234931655472	2.39231873033279	2.79709997466992	2.53422864510723	2.75495437101415	-1.65602190940993	0.0252299620607663	0.149379759567733
Merged-chr16-19973094-3	chr16	19973005	19973205	+	634.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183390, intron 1 of 6)	intron (NM_183390, intron 1 of 6)	9944.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	3.30801402365195	3.08755748530865	3.25401867018877	3.38308308500807	2.9598704890002	3.30874107576586	3.00064369839204	3.19546362879907	-0.582676707549667	0.309671813045827	0.621833440934041
Merged-chr7-113614647-4	chr7	113614541	113614741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49654.0	NR_126544	69295.0	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	5.25757897834982	5.62445018153193	5.48273187834599	6.12927037856579	5.83608358841278	5.71615106730789	5.76466397921022	5.41875573813476	0.00952002739362065	0.97628719273219	0.991528225629167
Merged-chr9-123929082-5	chr9	123929000	123929200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39592.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	5.53589165424756	5.62079126088086	5.48282958409978	5.18129434551698	5.3780047412747	5.57199654517941	5.48242624764911	5.42260320579756	0.021602858635399	0.940052991378994	0.978403425600103
Merged-chr4-11559450-1	chr4	11559350	11559550	+	540.0	f0_balb.idr	intron (NM_001039556, intron 1 of 14)	intron (NM_001039556, intron 1 of 14)	530.0	NM_001256145	623474.0	Mm.491200	NM_177285	ENSMUSG00000078773	Rad54b	E130016E03Rik	RAD54 homolog B (S. cerevisiae)	protein-coding	3.21053408937536	3.51743237940876	3.54254703474959	3.09841752489476	2.93485202532928	3.12145939703919	3.06917299647111	3.8026906454545	-0.259652944264	0.683155977005387	0.870271715831715
Merged-chr17-50415843-4	chr17	50415744	50415944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-93703.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	6.59365241742892	6.60105529537486	6.18494938058719	6.46002310159768	6.44090000847917	6.6917684866846	6.36489396187526	6.24211849193865	-0.0424042744571761	0.85432992497922	0.945140654804102
Merged-chr11-94381080-4	chr11	94381015	94381215	+	993.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	11861.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	5.05259558558732	4.79418839058447	5.29305854920691	4.9363424331227	5.34122714480148	5.08928718118702	4.51266793003502	5.01660126896597	0.0173399751941376	0.961769127098752	0.986287517870095
Merged-chr18-5592727-4	chr18	5592630	5592830	+	816.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033552)	promoter-TSS (NR_033552)	83.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	3.87561571461104	4.2421027126571	4.21075124005564	4.15688153040835	4.03821685600703	3.88225680424879	4.23250947085714	3.87402323144583	-0.301970216545503	0.482801972853099	0.757421686487144
Merged-chr19-5572485-4	chr19	5572376	5572576	+	959.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4452.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	4.93336445472298	5.16165652239369	4.8255693664105	5.01678714659881	4.83621557079455	4.88321824787542	4.55609734563318	5.03077486438599	-0.316484439284924	0.343170822160783	0.651861548638514
Merged-chr14-55728470-4	chr14	55728381	55728581	+	982.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6218.0	NM_001360387	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	4.98913347756107	5.00539221149062	5.21699032026842	5.09826240034063	5.17568753229516	4.93592726039208	4.93038142839555	5.29932936262364	0.0372690277380437	0.90458571309571	0.964559678221358
Merged-chr16-3847194-4	chr16	3847104	3847304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081217)	promoter-TSS (NM_001081217)	-19.0	NM_001081217	385674.0	Mm.244261	NM_001081217	ENSMUSG00000054939	Zfp174	Gm1754	zinc finger protein 174	protein-coding	7.87929556583446	7.79489852694645	7.86593223096174	8.22252569330504	7.76468571007166	7.64772153245255	8.04372381480377	7.78456167398997	-0.185640064059323	0.325265853103987	0.636829810230371
Merged-chr14-73525013-4	chr14	73524944	73525144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172527, intron 3 of 4)	CpG	205.0	NM_001360484	214254.0	Mm.386852	NM_172527	ENSMUSG00000033405	Nudt15	6530403O17|A730068G11Rik|MTH2	nudix (nucleoside diphosphate linked moiety X)-type motif 15	protein-coding	6.70314926402157	7.01318750956159	7.28724370859922	6.48541988504737	6.72532364969452	6.95645982843614	7.05200673430326	6.88591437126681	0.0136031708987371	0.955465677770175	0.984169883767757
Merged-chr3-55612382-4	chr3	55612305	55612505	+	902.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150677.0	NM_001357476	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	4.73472567623704	4.49237285650042	4.51308997990332	4.73299834521019	4.24637245668585	4.21078773596689	4.40941770179345	4.55003844609248	-0.624217915146157	0.0964367012892313	0.340286930451427
Merged-chr4-63389915-4	chr4	63389827	63390027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 4 of 21)	intron (NM_001045514, intron 4 of 21)	8313.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	7.65307779078935	7.7303919286379	7.52387579649523	7.89136889332161	7.61963170308928	7.20214729207062	7.53166950661456	7.26559069256334	-0.383576274995803	0.0483323790359442	0.226929446398382
Merged-chr3-105018997-4	chr3	105018900	105019100	+	971.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	33953.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	5.56930084007518	5.35320707313993	5.84023839179371	5.80106423280227	4.99143023322269	5.33678836973592	4.63831204638537	5.3476373720531	-0.994601774191104	0.00266982235902479	0.0291733628635286
Merged-chr13-9093754-4	chr13	9093668	9093868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311117)	promoter-TSS (NM_001311117)	-113.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	9.4815493988113	9.49793302078035	9.27311286253918	9.33272583754322	9.4918266210541	9.49543563348173	9.58604273587332	9.26749924135238	0.082038531199634	0.577464775812679	0.814166268489505
Merged-chr16-14317381-4	chr16	14317281	14317481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025345)	promoter-TSS (NM_025345)	-49.0	NM_025345	66086.0	Mm.42072	NM_025345	ENSMUSG00000022677	Fopnl	0610037P05Rik	Fgfr1op N-terminal like	protein-coding	8.98500722159735	8.79135722525731	8.90276335617542	9.09131825237312	8.75614796571873	8.94572265425571	9.0146771708297	8.6344953509179	-0.131060280449035	0.41800476319216	0.711628236434313
Merged-chr2-52955280-4	chr2	52955170	52955370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	97402.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	9.10654067350374	9.3084176515261	9.0714645733661	9.10102313461334	8.92344436201071	8.99646623511612	9.21813880654643	8.75420274653133	-0.206770498678935	0.199218090666031	0.501029767349214
Merged-chr11-18011344-4	chr11	18011266	18011466	+	980.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57396.0	NR_131915	102633673.0	Mm.396603	NR_131915	ENSMUSG00000086468	Etaa1os	2900053O20Rik|4930542E09Rik	Ewing tumor-associated antigen 1, opposite strand	ncRNA	5.3402523377813	5.55039708534299	5.10114914353272	5.51928380178672	4.72134100676171	4.81190635649714	5.07607492349077	4.67178082862932	-1.1033111448981	0.000731145506067999	0.0104797031768856
Merged-chr14-45325663-3	chr14	45325533	45325733	+	914.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-4191.0	NM_025959	67089.0	Mm.18472	NM_025959	ENSMUSG00000021832	Psmc6	2300001E01Rik|AI451058	proteasome (prosome, macropain) 26S subunit, ATPase, 6	protein-coding	3.79104659529913	3.54265120392392	3.57878430699125	2.92088350639894	3.49131072587529	3.96473189347852	4.07556859916516	3.68727153041591	0.989289737233143	0.0863628019449698	0.320484744259476
Merged-chr2-52606202-4	chr2	52606079	52606279	+	789.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	L2a|LINE|L2	-47568.0	NM_001285427	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	3.68031980645312	3.44770978032547	3.62678009212515	3.88146206979584	3.88187774324803	3.28394248721077	3.76650122723141	4.00325851779326	0.260525465577096	0.62318692607235	0.838922840312846
Merged-chr12-70140742-4	chr12	70140645	70140845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-13426.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	6.42766912582134	6.30527983502065	6.3402170825637	6.58937888082534	6.09319375435618	6.06138742085924	6.7745964558327	6.49078762472651	-0.0626077335960758	0.807974171117592	0.92593795364266
Merged-chr16-30945116-4	chr16	30944999	30945199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136333.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	6.22721633680166	6.05450599991507	5.89916695283609	5.83941879977945	5.65131479764072	5.66213534168924	5.599982787756	5.44840413632288	-0.66899152260883	0.0108987399706625	0.0839479799020724
Merged-chr13-67451611-4	chr13	67451518	67451718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177712)	promoter-TSS (NM_177712)	6.0	NM_177712	238692.0	Mm.486478	NM_177712	ENSMUSG00000069206	Zfp874a	C330011K17Rik|Rslcan15|Zfp874	zinc finger protein 874a	protein-coding	6.10451914003633	5.71500459629045	6.1852432017434	6.1686464661542	6.09521379580632	6.23948646510956	6.39679531703878	5.97156375140471	0.187890431683845	0.457296337559739	0.740413755487572
Merged-chr5-147871672-4	chr5	147871562	147871762	+	952.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025624, intron 4 of 5)	intron (NM_025624, intron 4 of 5)	11034.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	4.75491323633679	4.59186520178993	5.24774488361964	5.55487684866183	5.24745597894054	4.89310465508447	5.06785990511291	5.3010034557481	0.0477921309929496	0.901105611814686	0.963342914941175
Merged-chr6-86504358-4	chr6	86504268	86504468	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16141.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	4.10644935655193	4.20401488412851	3.87948268455757	4.41201537226418	4.60558580521907	4.56041315802029	4.6648945619338	4.3431835943345	0.84950963647563	0.0394163504501389	0.199923556973648
Merged-chr13-46930031-4	chr13	46929918	46930118	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010617)	promoter-TSS (NM_010617)	-300.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	4.84820896760126	4.93318061727355	4.73329350906564	4.52551888995669	4.84196718554909	4.98609432043453	5.08880917657449	5.08050746664003	0.493928583300009	0.138218442621953	0.413600027627647
Merged-chr9-48576950-1	chr9	48576850	48577050	+	810.0	f1_c57bl6.idr	Intergenic	B4|SINE|B4	28173.0	NM_010924	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	3.17985707423922	3.42393099361433	3.29352277036493	2.98270280319349	2.85844595962206	2.95528238694777	3.2798934789136	3.34460408158954	-0.395858811651405	0.51634918800727	0.778087543875212
Merged-chr6-48083982-3	chr6	48083880	48084080	+	934.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362062, intron 1 of 5)	intron (NM_001362062, intron 1 of 5)	2613.0	NM_001347142	69228.0	Mm.207555	NM_001163475	ENSMUSG00000057691	Zfp746	2810407L07Rik|AI317225|Znf746	zinc finger protein 746	protein-coding	3.84628566535701	4.06865654056671	3.89528329933308	4.25688263661316	3.26831198781499	3.62890757435362	3.499053065885	3.8445510740315	-1.43204182891071	0.00537303814230606	0.0501044781778073
Merged-chr8-70635672-4	chr8	70635564	70635764	+	948.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3208.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	3.89948264803393	4.03317354940433	4.45137153969643	4.11845501750671	4.70453853470925	4.0232421106604	4.09343014652249	4.20237492727222	0.393514912168061	0.383377604770957	0.685301023974684
Merged-chr9-31168902-3	chr9	31168803	31169003	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001102456, exon 6 of 17)	exon (NM_001102456, exon 6 of 17)	-37104.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	5.07591762147347	4.77582163234454	5.4505928973452	5.95776510110863	4.13608567654267	4.43010261989179	4.03469040071349	4.44807716059383	-2.40690361351481	4.92153092119493e-08	2.25424484838954e-06
Merged-chr11-60830669-4	chr11	60830560	60830760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145428)	promoter-TSS (NM_145428)	29.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	6.98133519196586	7.15745838174902	6.74710668016763	6.66931760330218	7.18031894090238	7.33508295611082	6.89588341374928	6.87234378742805	0.2634382098423	0.237454924549171	0.547644711485644
Merged-chr1-182516863-4	chr1	182516651	182516851	+	846.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009794, intron 1 of 20)	intron (NM_009794, intron 1 of 20)	859.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	2.84341818412631	2.7022516958132	3.09203423794965	2.88809777960899	2.91529130432588	3.14532634829022	3.02265756973007	3.19837914895133	0.771747188031237	0.199535464524662	0.50147358341222
Merged-chr3-95652463-10	chr3	95652486	95652686	+	961.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6135.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	4.95347019157917	5.09386142663651	5.28535069749923	4.70476318435164	5.18051735445108	5.36837001298656	5.31543184514349	5.36608933589989	0.561481695631599	0.0768132926860738	0.29957252758993
Merged-chr5-136246082-4	chr5	136245974	136246174	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1134.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	4.59450975792861	4.36150558729577	5.18058992159857	4.84898833548653	5.17339005422858	5.02298833858713	5.03238211792466	5.3668410149015	0.729942413562219	0.0429716982958259	0.210913016926852
Merged-chr3-108442519-3	chr3	108442428	108442628	+	807.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011319, intron 1 of 11)	PB1D11|SINE|Alu	2731.0	NM_011319	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	3.36363013525904	3.23326849599457	3.4630123618847	3.60260264271415	2.96022470949239	2.89971363425226	2.86191363550909	3.13815370270958	-1.90981012516748	0.00216255118048408	0.0248391528926378
Merged-chr15-67174163-4	chr15	67174070	67174270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 1 of 8)	intron (NM_009177, intron 1 of 8)	2712.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	6.55000991849494	6.68892298534417	6.19919710802273	6.62167342415459	6.45611224528807	6.92059612396647	6.62552174554497	6.35490435880277	0.0946107182446496	0.692619863003758	0.87499975964798
Merged-chr6-128065568-3	chr6	128065438	128065638	+	894.9833369999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356301, intron 1 of 7)	intron (NM_001356301, intron 1 of 7)	78040.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	3.54917817968947	3.48645827889399	3.73313465279932	3.40022771312681	3.86473215069645	4.11960591102275	4.18812517408103	4.51996184308408	1.8492440247311	7.87510651860264e-05	0.00165693824087383
Merged-chr12-91666817-4	chr12	91666701	91666901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-76314.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	6.22709311513316	6.16836831956876	6.24754293335586	6.61489012378338	6.18764193775151	6.2166135994805	6.32524327299017	6.26212075105072	-0.151328116925922	0.525612266852801	0.783344965291364
Merged-chr15-90216329-3	chr15	90216225	90216425	+	764.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-7986.0	NM_001033441	380959.0	Mm.17853	NM_001033441	ENSMUSG00000075470	Alg10b	AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5	asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)	protein-coding	3.78058888998754	3.96060833262018	3.96054192299557	3.36812093726358	3.4559122061549	3.21998303587911	3.89960524691576	3.32330416402089	-0.8854501326591	0.123046589123164	0.388948093400731
Merged-chr13-105310947-8	chr13	105310845	105311045	+	892.2177730000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-16460.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	4.92559800711923	4.82029659273065	4.7112109455718	5.10014212076996	4.67485668107459	4.8456917852994	4.68922800678475	4.35110600327573	-0.540892026352412	0.128130244533366	0.398348227806964
Merged-chr9-44569750-4	chr9	44569659	44569859	+	708.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35133.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	3.19722406626462	3.3036413920013	3.13192539393424	3.21954191897115	3.42814014903893	3.54741303386908	3.65780606548654	3.31824580426446	0.966849684424701	0.0628045387041394	0.265603009947237
Merged-chr8-36264849-1	chr8	36264749	36264949	+	566.0	f1_c57bl6.idr	Intergenic	Intergenic	-15333.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	2.8943051750432	2.86901195065329	2.82395302310222	2.80896714354766	3.26745377646326	3.13771022818423	3.5170670446191	3.02426718828414	1.6445466788541	0.00496080644388942	0.0472761068241539
Merged-chr16-11054603-3	chr16	11054496	11054696	+	747.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11702.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	3.60657152128979	3.47477516389014	3.55324842203549	3.63355980284341	3.83411613715003	3.2851369248555	3.64364608640929	3.70614587731122	0.220444005012724	0.661002735125571	0.859233242450522
Merged-chr19-37955638-4	chr19	37955517	37955717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 22 of 53)	intron (NM_001302140, intron 22 of 53)	87960.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	6.6787002290705	6.87798689201648	6.79536316376464	6.6559846446353	6.77444628858454	6.74608613935226	6.50250974753274	6.64452678418963	-0.107330198203653	0.601269451628559	0.827071740947179
Merged-chr9-45406286-4	chr9	45406244	45406444	+	981.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007503, intron 1 of 5)	(TG)n|Simple_repeat|Simple_repeat	267.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	5.71295312885906	5.81486767852201	5.92643686872877	5.13518186680396	5.57605522767868	5.31696389870297	5.0752848858871	5.16916267801947	-0.626820284623567	0.0624258834675548	0.264504551421935
Merged-chr9-121313773-4	chr9	121313671	121313871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	RMER17C|LTR|ERVK	16269.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	4.91853531837501	4.81638811548995	4.52097265704315	4.17173104846585	5.22787931478599	5.09221879980318	4.78902871591079	4.94976936525952	0.831963485440435	0.0276472259483343	0.158637798934018
Merged-chr8-84811064-4	chr8	84810941	84811141	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10703.0	NM_001081982	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	6.2311795457569	6.03263793545544	5.54108439722879	5.93154993021255	6.17203461857115	6.27559847888713	5.73579192573728	5.59688087591209	0.036791699604099	0.900433414954569	0.963122502375067
Merged-chr14-19972616-4	chr14	19972533	19972733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285908, intron 1 of 3)	GA-rich|Low_complexity|Low_complexity	4060.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	5.60181776755289	5.41498218106389	5.84664844696046	6.04574396879134	5.77962898540886	5.69570809025809	5.30826738560628	5.67700957586341	-0.220789064597076	0.457378842462585	0.740504919348528
Merged-chr9-40501658-4	chr9	40501565	40501765	+	964.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	29718.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	6.79997265106025	7.06040402906845	6.94168710226757	7.0072610330804	5.31583847245069	5.46198118519507	5.49606373107235	5.3428884032254	-2.43655178413887	1.4601486014212e-23	7.93373414508088e-21
Merged-chr15-90132640-3	chr15	90132556	90132756	+	690.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91655.0	NM_001033441	380959.0	Mm.17853	NM_001033441	ENSMUSG00000075470	Alg10b	AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5	asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)	protein-coding	3.74304907378922	3.54686608026092	3.74363388381247	4.06013941000184	3.28267001479475	3.05806213240365	3.29973426297654	3.30938955273829	-1.9512850516136	0.000644733246486531	0.00944268883779112
Merged-chr18-15201716-4	chr18	15201630	15201830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50284.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	6.32685661007176	5.85613857962109	6.50196313877614	6.72124406042611	6.28759067421644	6.11850416827778	6.88981908811258	6.52936201818727	0.131665505007634	0.650343615127656	0.853226674764141
Merged-chr4-5692448-4	chr4	5692362	5692562	+	900.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173426, intron 1 of 2)	MMERVK9C_I-int|LTR|ERVK	-31850.0	NM_001355716	242297.0	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	4.84020832948382	4.46158943222558	4.84101132737989	4.94010406493586	4.48474570027653	4.48335343677102	4.55883518737429	4.76868437981819	-0.465780092221887	0.198662010731948	0.500267574537937
Merged-chr19-28777983-4	chr19	28777904	28778104	+	969.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-57162.0	NM_009199	20510.0	Mm.246670	NM_009199	ENSMUSG00000024935	Slc1a1	D130048G10Rik|EAAC1|EAAC2|EAAT3|MEAAC1	solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	protein-coding	4.85669804660111	4.84301322655268	5.44012323602065	5.03738806756673	4.91576009170378	4.99537269840119	5.04723455508007	5.19365842107879	-0.0480842662168502	0.884864935799237	0.956749878708418
Merged-chr10-30751830-4	chr10	30751747	30751947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 2 of 14)	L2|LINE|L2	51479.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	6.89022350442008	6.66105986171651	6.91656648076745	6.90061667619689	6.19834750835159	6.57840189503551	6.73712107836124	6.53758744207579	-0.474880857952925	0.032919219267586	0.178102143877946
Merged-chr16-49504005-4	chr16	49503904	49504104	+	845.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-195290.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	4.08410904665321	3.61139656834664	3.69841310782076	3.29733256121357	3.99854743167523	3.81952975030632	3.79028795220755	4.12299993537392	0.719836722947493	0.153440581578652	0.438096556605973
Merged-chr12-81859899-4	chr12	81859794	81859994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018814)	promoter-TSS (NM_018814)	-136.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	5.62477981777445	5.71069491366668	5.5472967397532	5.62715475819323	5.33731272474692	5.42260990732923	5.86781409154093	5.20592791823026	-0.256347034745402	0.378078330040249	0.680676787078483
Merged-chr16-50432397-4	chr16	50432295	50432495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347240)	promoter-TSS (NM_001347240)	-6.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	7.62470790148414	7.53514937060629	7.30292523115089	7.66372596008701	7.47926220290419	7.48038091761583	7.35013537043853	7.61237579324407	-0.0832837896610107	0.647229657304798	0.851605116430591
Merged-chr2-157201108-4	chr2	157200994	157201194	+	881.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011249, intron 1 of 21)	Lx9|LINE|L1	3440.0	NM_011249	19650.0	Mm.244671	NM_011249	ENSMUSG00000027641	Rbl1	AW547426|PRB1|p107	RB transcriptional corepressor like 1	protein-coding	3.47780550752978	3.67134246058299	3.64227763018666	3.26614217029119	3.75335010123957	3.3357647676234	3.52143947971101	3.87345933160418	0.40134890827964	0.441216492497501	0.728396857622944
Merged-chr17-57342465-6	chr17	57342351	57342551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-16235.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	5.02528890105599	4.97945299463845	5.18791117686394	5.02855899813635	5.13226386820756	5.29719185391213	4.89549136534557	5.12218910146871	0.123428867042439	0.687592930340867	0.872380452246745
Merged-chr18-80200660-4	chr18	80200578	80200778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199197)	promoter-TSS (NM_199197)	-59.0	NM_199197	68731.0	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	7.4150762903581	7.36470612428558	7.05068301760984	7.24796901283795	7.65262373465125	7.80298326032521	7.91713499687676	7.58660901436988	0.619634348061253	0.000816723338708203	0.0114323599854299
Merged-chr2-121289556-4	chr2	121289424	121289624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032393)	promoter-TSS (NM_032393)	-78.0	NM_032393	17754.0	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding	5.61545649818716	5.76910812612978	5.75500798813528	5.53175316469977	6.2614281088829	6.10346030864155	6.45766508661537	6.36354922381978	1.01264454620491	2.72308085009551e-05	0.000668135718128054
Merged-chr10-34171328-2	chr10	34171228	34171428	+	790.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 2 of 5)	intron (NM_172508, intron 2 of 5)	36223.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	3.02712011478476	2.87100097019399	3.13912601937653	2.99970636218749	2.84014488357898	3.01312896111378	2.83092626725362	3.02591844974943	-0.360163463527694	0.54597537408618	0.796074751666022
Merged-chr12-108180348-4	chr12	108180265	108180465	+	928.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009832, intron 1 of 11)	intron (NM_009832, intron 1 of 11)	627.0	NM_009832	12454.0	Mm.474441	NM_009832	ENSMUSG00000021258	Ccnk	AW123198|AW413594|CPR4|CycK	cyclin K	protein-coding	4.31416235132312	4.46886861278375	4.44720744520096	4.35494676375339	4.34395550514074	4.53410168928849	4.3847914707584	4.70792806134603	0.22835707578144	0.537553401295327	0.791144778684373
Merged-chr3-146653792-4	chr3	146653698	146653898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2481.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	7.31256977431341	7.03335328104521	7.44902002059331	7.471051880344	7.11891989390924	7.1272325131202	7.20411964886587	7.13398627674302	-0.254258425323989	0.188455710321505	0.487023527029533
Merged-chr2-180273604-4	chr2	180273504	180273704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145851)	promoter-TSS (NM_145851)	-139.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	8.8228173979301	9.04352829248041	8.95438380780147	9.06531206987026	8.81335192121339	9.00610065775761	9.04852142303959	8.80647833993989	-0.0711193931100578	0.638228283576616	0.847061371191777
Merged-chr12-85478416-3	chr12	85478310	85478510	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	4520.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	4.82781220431672	4.58165862451702	4.64670312233749	4.45757085426212	4.47209447371195	4.77988272138713	4.50335998043332	4.92190220691945	0.115510931213124	0.75206653739036	0.902340397217167
Merged-chr9-108560399-4	chr9	108560312	108560512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011830)	promoter-TSS (NM_011830)	-89.0	NM_011830	23918.0	Mm.6065	NM_011830	ENSMUSG00000062867	Impdh2	IMPD	inosine monophosphate dehydrogenase 2	protein-coding	7.78875943283654	8.1133885133409	7.60524145673384	7.37656181582904	8.17815026580474	8.22120513921706	7.84958116070613	7.61799775043038	0.319833032628995	0.159064117285737	0.446293697200577
Merged-chr15-97195896-4	chr15	97195805	97196005	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28661.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	5.40714885413037	5.39610817419476	5.05110619941658	5.3464896276532	5.66604454658656	5.6091083215155	5.40878604592208	4.9708755705236	0.242390033670743	0.439817511014106	0.727425871224001
Merged-chr2-36049351-4	chr2	36049242	36049442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029309)	promoter-TSS (NM_029309)	-50.0	NM_026703	68375.0	Mm.19834	NM_026703	ENSMUSG00000026895	Ndufa8	0610033L03Rik|AW261656	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8	protein-coding	7.02484114347668	7.20637337235335	6.65639365986146	7.11731192276747	7.40697836049136	7.43636073939967	7.4281224133825	7.50427925804262	0.562726433085721	0.00437154183418529	0.0429603722512045
Merged-chr2-24934838-2	chr2	24934715	24934915	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_178408, intron 1 of 7)	CpG	466.0	NR_027876	215705.0	Mm.45275	NM_178408	ENSMUSG00000026972	Arrdc1	AI957342|BC004091	arrestin domain containing 1	protein-coding	5.18261505592994	4.88949324576415	5.02139905311346	4.95847178251494	5.24296901028241	4.93215533166633	5.15788296151859	5.20995047159984	0.264004118712824	0.390506233125917	0.69058015678842
Merged-chr17-24645238-4	chr17	24645218	24645418	+	752.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023449)	promoter-TSS (NM_023449)	-361.0	NM_023449	65962.0	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	3.69700845366372	4.05139414092479	3.33435196087696	3.65891719712857	3.89737649865402	3.64454577121651	3.68267808606867	3.79700300245833	0.152735051128878	0.762010455202099	0.906776947564005
Merged-chr2-60848683-4	chr2	60848575	60848775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	32763.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	5.96188768803919	6.25700756434959	5.89027966063599	6.26580870959907	6.27522137052489	6.33454926593026	6.41310963116065	6.19418924610777	0.279199308601955	0.240304636547791	0.550870712287303
Merged-chr13-94794282-4	chr13	94794163	94794363	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009321, intron 1 of 3)	intron (NM_009321, intron 1 of 3)	5320.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	4.13240252007246	3.95837770439867	3.67866279373251	3.85479898783083	3.94126109001163	3.5311295307551	4.27174529716357	4.17215114283805	0.258936852803933	0.591275842006221	0.821525680896513
Merged-chr12-79018128-4	chr12	79018033	79018233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10856.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	5.90436431100868	6.27492864906753	5.7576515806228	6.09349570484456	5.81332128724819	6.03419849393947	6.1258380583982	5.877760730848	-0.109359250725414	0.670330693792979	0.864014422495889
Merged-chr3-28027104-4	chr3	28026980	28027180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 3 of 25)	intron (NM_008875, intron 3 of 25)	42909.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	5.05876093555093	5.33766613889362	5.74671946624084	5.75567235833009	5.46539588818762	5.45531744693565	5.54561313635485	5.97335495532213	0.180934272916158	0.572438824518694	0.811251013052168
Merged-chr11-109344159-4	chr11	109344070	109344270	+	915.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2697.0	NR_027883	67927.0	Mm.394490	NR_027883	ENSMUSG00000099630	1700096J18Rik	-	RIKEN cDNA 1700096J18 gene	ncRNA	4.610391777845	4.44155172184248	4.40957778878021	4.23998968634836	4.20142687940406	4.74407974879536	4.30021086342476	4.68039783242747	0.165050480421076	0.676975611548704	0.867354572468851
Merged-chr2-21187503-3	chr2	21187408	21187608	+	998.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027728, intron 4 of 4)	intron (NM_027728, intron 4 of 4)	17857.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	4.58581320704833	4.64559004181409	4.7693516936814	4.62907313148704	4.94199177172545	4.35410675080538	4.30713828558835	4.11567319085842	-0.36915180527382	0.374501075794347	0.677830694759353
Merged-chr5-139732999-4	chr5	139732917	139733117	+	882.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	3316.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	4.3338596177335	3.99141786634476	3.95554103846782	4.16672940733048	4.18208349278878	4.46319270124221	4.5368297031413	3.89735939698502	0.417329205637206	0.333803117492866	0.644557528456154
Merged-chr8-35109911-2	chr8	35109868	35110068	+	768.791626	f0_balb.idr|f1_balb.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-144278.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	3.67604388740256	3.66448878330692	3.62495619796638	3.93454510519648	3.54996853195554	3.44363241174737	3.32036303439687	3.72395506224709	-0.708605534300032	0.160972820554655	0.44943454908056
Merged-chr9-21924208-4	chr9	21924115	21924315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045606, intron 3 of 4)	intron (NR_045606, intron 3 of 4)	3073.0	NM_001253869	235043.0	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	7.04977414196618	7.39941703413422	7.10063074356391	7.39659797589592	7.28563272248305	7.26569097668729	7.30671366823564	7.31794716737484	0.0469906093536862	0.804115730551781	0.9245505933892
Merged-chr18-4302857-4	chr18	4302756	4302956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50097.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	6.62174003792995	6.18862118129288	6.46293300869698	6.70841048366291	6.41296046470584	6.19751402158765	6.75666102905354	6.54079525756151	-0.0374078683931592	0.877935417220511	0.954314763971155
Merged-chr6-113000920-6	chr6	113000804	113001004	+	873.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45398.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	3.2986446722214	3.37437378368966	3.61020194310299	3.29434138134518	3.16030509192534	3.52706385628545	2.96038665435642	3.35462754107835	-0.480186451866423	0.400181989054921	0.698107947002665
Merged-chr16-21279022-2	chr16	21278922	21279122	+	697.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_046162, intron 3 of 4)	intron (NR_046162, intron 3 of 4)	17850.0	NR_046162	328646.0	Mm.404748	NR_046162	ENSMUSG00000096918	Gm16863	A830060N17	predicted gene, 16863	ncRNA	2.61945377703057	2.70952774766121	2.39865817365163	2.75684940446417	2.55920862722051	2.8561275188323	2.79841215284274	2.86510577453732	0.658518838626195	0.340883776100492	0.65001517089201
Merged-chr10-21845452-3	chr10	21845368	21845568	+	947.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1B|DNA|hAT-Tip100	-36716.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	3.56105016924412	3.99590835531711	3.67211280731232	3.85765308218852	3.43485257373234	3.842986358199	3.54821188212623	3.55965072485487	-0.589735745013023	0.234039890331802	0.543723238550186
Merged-chr19-53453389-3	chr19	53453296	53453496	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028427, intron 2 of 9)	intron (NR_028427, intron 2 of 9)	11400.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	5.57116927641288	5.48173319553278	5.12286377178873	5.26573615292201	4.3953029696073	4.56013472315456	4.18505510815276	4.00957696988436	-2.26479506262475	7.73070941269053e-09	4.18133864199012e-07
Merged-chr13-115136968-4	chr13	115136879	115137079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35015.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	5.52452654490284	5.87546721712373	6.18646774075279	5.99760638112304	5.85737431921411	5.73292249337933	5.61151742471678	5.81417866142985	-0.260668607247848	0.335525653775163	0.645906166600739
Merged-chr15-63665718-4	chr15	63665609	63665809	+	904.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143030.0	NM_031378	83492.0	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	4.55413479526167	5.32682459112262	4.80533146647342	5.29617696008743	4.90595709363627	4.59246632513002	4.62263743358391	4.83952030894857	-0.597450018828371	0.115155945363524	0.375495214395084
Merged-chr2-5702510-4	chr2	5702424	5702624	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	GA-rich|Low_complexity|Low_complexity	12238.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	5.14521591327987	5.24691944963296	5.39548462291249	5.90449720943949	5.4586844248562	5.06136972136673	5.25081215939743	5.17651805821325	-0.406957624956829	0.227427326458117	0.536115043419104
Merged-chr7-67440854-4	chr7	67440772	67440972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68014.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	4.82013011282195	4.74614281397683	4.93315351315189	4.89773299638122	4.79012270974703	5.03505830416162	5.44890071050293	5.09722292000178	0.496110212340636	0.13973874045565	0.415685591824798
Merged-chr10-88304510-3	chr10	88304407	88304607	+	810.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52568.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	3.75277290930023	3.654965880399	3.47119165929668	4.16017945089451	3.52793098875608	3.70826233594351	3.8342070890942	3.69948414144616	-0.32860242926624	0.522351646570136	0.781971587334536
Merged-chr10-118818146-4	chr10	118818054	118818254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50749.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	7.85016470619762	8.09928882521525	7.89599552397544	7.6811868194439	8.08980724980266	8.32372321829377	7.96246611893549	7.62362089341938	0.178272830566895	0.378358604532663	0.680928428404154
Merged-chr9-16307552-3	chr9	16307438	16307638	+	908.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	70693.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	3.92283714286682	3.76284992716086	3.9234413068359	3.69854852141578	3.48258829040767	3.79121857416032	3.90596987717124	3.6138491375739	-0.36363360311621	0.443435892236383	0.729939718634941
Merged-chr10-98619336-4	chr10	98619232	98619432	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-267465.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	4.79164072899558	4.58319991115992	5.15346897872769	5.17914698460399	4.92767825607083	4.30414808911529	4.87789342976773	4.93261247190691	-0.336360222302031	0.380997794649562	0.683305836156047
Merged-chr11-59228217-4	chr11	59228113	59228313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130408)	promoter-TSS (NM_001130408)	-51.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	7.12771006828469	7.32000645731834	6.96453322931741	6.77991299106404	7.2219657841768	7.70763662842586	7.4233534341444	7.36076695968324	0.514766040437836	0.0166183280986864	0.112794505171775
Merged-chr6-42354351-5	chr6	42354245	42354445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289618, intron 4 of 9)	intron (NM_001289618, intron 4 of 9)	4517.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	4.71738160349136	4.58325169719496	4.93440445391504	4.6509580234062	4.82886471595975	4.72857730177536	4.53023021975955	5.25014956395232	0.290613513148319	0.422975474561518	0.714938134013999
Merged-chr17-7869283-4	chr17	7869192	7869392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56708.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	5.98903085843558	5.56611757381778	5.6470045011442	5.79994681431096	5.83739130656182	5.46506953337215	5.53767835684999	5.85972364463426	-0.108088611820315	0.693761938785239	0.875550716931276
Merged-chr7-43530554-4	chr7	43530451	43530651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111058, intron 3 of 6)	intron (NM_001111058, intron 3 of 6)	2620.0	NM_001111058	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	7.75018761233548	7.55646332240629	8.01550891293786	7.54768940090024	7.62424788265865	7.59379366570112	7.57511588132413	7.30559782887617	-0.251213947589971	0.196687890640927	0.497832564111034
Merged-chr9-45102826-3	chr9	45102711	45102911	+	938.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005421, intron 8 of 10)	intron (NM_001005421, intron 8 of 10)	-15065.0	NM_001014761	72821.0	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	4.16463674176616	3.96730879276742	3.89017393228711	3.97919012703041	3.07075762855462	3.1783056705397	3.0536406096231	3.28413532888215	-3.39097087478306	2.26128606266253e-07	8.99195981308693e-06
Merged-chr5-146750022-4	chr5	146749940	146750140	+	989.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 6 of 8)	intron (NM_011669, intron 6 of 8)	44916.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	5.03798974489016	4.74753263749335	5.17063618565751	5.4366238935972	4.77027175951505	5.03078798289422	5.39720946629143	5.28628688600246	0.000878085948960611	0.998034837309638	0.99910121404386
Merged-chr8-22807389-5	chr8	22807257	22807457	+	933.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1703.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	4.2727772912921	4.22078761768106	4.22564402821927	4.04419493476913	4.60566176319949	4.73537099451312	4.38686170306354	4.52507165678656	0.914881726833705	0.0143711511828932	0.101773372803418
Merged-chr8-45975338-4	chr8	45975237	45975437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138668)	promoter-TSS (NM_138668)	-85.0	NM_001033148	69479.0	Mm.158282	NM_001033148	ENSMUSG00000071103	1700029J07Rik	-	RIKEN cDNA 1700029J07 gene	protein-coding	9.11061629859277	9.43501759372419	9.26567791696921	9.27264487420605	9.15643169471321	9.29974339716808	9.27170223674924	9.18397555702499	-0.0610914794281443	0.672259658171237	0.865100575585603
Merged-chr11-60900667-3	chr11	60900600	60900800	+	752.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13092.0	NM_025294	24083.0	Mm.22780	NM_025294	ENSMUSG00000018931	Natd1	AI256713|F3-2|Gm16515|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding	3.49386776463003	3.5176091597905	3.75282665614075	3.8934683520399	3.58721782203676	3.54963193832835	3.53672748777177	3.37286653267381	-0.546748558411653	0.279549255507864	0.591552054517177
Merged-chr8-41825096-1	chr8	41824996	41825196	+	751.0	f0_balb.idr	Intergenic	Intergenic	-2171.0	NR_045497	69966.0	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	3.25528314414116	3.0826645450086	3.14889462574897	3.55593125277587	3.00442892188595	2.70905772883576	2.68011011205954	2.96833043456655	-1.85054472197045	0.0081331204973214	0.0679482581618952
Merged-chr14-9470578-4	chr14	9470473	9470673	+	931.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-413522.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	4.50033523654514	4.44249289388081	4.57773338031696	4.16306658973154	4.79236274825391	4.36671067503821	4.31301431402077	4.02713391200287	-0.00195204898037362	0.996332935362911	0.998602617451138
Merged-chr13-23445861-4	chr13	23445772	23445972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-14855.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	5.59664245045144	5.61055839393998	5.59762134874258	5.3008438035517	5.25108163439604	5.39345974943104	5.54385675732279	5.54192766579548	-0.151858760295459	0.594047168564737	0.823266307249001
Merged-chr18-70436413-4	chr18	70436298	70436498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36056.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	7.85499605006158	8.12347424680008	7.90777691565758	8.09542414612182	8.03164783052995	7.88250356964574	7.95305005942236	7.58437318556626	-0.165042182154646	0.359628832650006	0.665443059431823
Merged-chr13-59853787-2	chr13	59853674	59853874	+	819.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30627.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	2.73798001881413	2.71582928625446	2.58600575899854	2.3476873653447	2.82068775882598	3.43729736015983	3.10069926598782	3.05717695992155	2.46005314772978	0.000347540718731478	0.00571175267111242
Merged-chr14-122983358-4	chr14	122983250	122983450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360598)	promoter-TSS (NM_001360598)	-67.0	NR_153663	70551.0	Mm.271988	NM_028651	ENSMUSG00000041594	Tmtc4	4930403J22Rik|5730419O14Rik	transmembrane and tetratricopeptide repeat containing 4	protein-coding	8.10944566338122	8.03760970532064	8.03940535859973	8.41593402748435	7.99981725996651	8.04555447052013	8.26963128913319	7.95126195923381	-0.126090198469702	0.480971189708107	0.7562581084679
Merged-chr9-48548451-4	chr9	48548353	48548553	+	919.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC2|LINE|L1	53110.0	NM_001004191	434402.0	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding	4.61608775102802	4.27441423940818	4.1423992357255	4.71134208502622	4.77896889708571	4.26879741310175	4.40249641255878	4.0318379805923	-0.124054370144345	0.778291576763073	0.913689436928734
Merged-chr1-161295743-3	chr1	161295616	161295816	+	903.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44506.0	NM_001303408	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	3.28146746590318	3.87658126477821	3.34154058677384	3.42009722563543	3.29988497330146	3.45565142779218	3.20859429952081	3.15246297704502	-0.772229960324136	0.170391088946756	0.463560227942354
Merged-chr17-34296203-4	chr17	34296105	34296305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8434.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	7.83574044916511	8.08854269375718	7.38331927204683	7.35425850146938	8.39036198436608	8.17195873038678	7.96253273240876	8.11027840293486	0.6091124254665	0.00579031418307585	0.0529210032405182
Merged-chr10-87740716-1	chr10	87740616	87740816	+	661.0	f0_balb.idr	Intergenic	Intergenic	-117549.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	3.68510546184111	3.45297023768267	3.73542511827918	3.58447314552682	3.52813429992218	3.85337032984938	3.61916960438861	3.57776270227639	0.0982438682411653	0.837977938391895	0.938474063450959
Merged-chr8-124948568-2	chr8	124948467	124948667	+	716.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_053207, exon 1 of 5)	exon (NM_053207, exon 1 of 5)	687.0	NM_053207	112405.0	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	2.90371070088831	3.00169557183134	3.38492836907096	2.99121159430045	2.92448931572393	3.21821468369738	3.26659003945656	3.47927517142957	0.589256155162469	0.326941229125032	0.638550920532616
Merged-chr10-117861073-4	chr10	117860980	117861180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15106.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	8.33257293219257	8.45593950964559	7.9762445221652	8.44675230707801	8.39895317096602	8.39145944567207	8.47692900079194	8.0952600257987	0.0342511346214366	0.850348034907131	0.943595335203908
Merged-chr12-113130311-4	chr12	113130195	113130395	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 11 of 19)	intron (NM_001346696, intron 11 of 19)	-9941.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	5.25511286055363	5.4561213687975	5.65595466609098	5.21852015406379	5.24017886334905	5.36675948070804	5.92813030350029	5.85478032017869	0.390692436801199	0.217765030248708	0.524691528498242
Merged-chr7-123354541-4	chr7	123354425	123354625	+	969.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	15390.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	5.0083906869696	4.63068978573048	3.8425311499447	4.36323897401547	4.80546303336071	4.95501678467581	4.61109783364331	4.7798510329636	0.570780898235185	0.199964133306556	0.50185984431534
Merged-chr4-120868985-3	chr4	120868882	120869082	+	764.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 1 of 7)	L2b|LINE|L2	14183.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	4.04750176697587	3.75788187735396	3.80873559446726	3.91253883391833	3.85398368624949	4.0312582781674	3.89339947284319	3.75298332463367	-0.00695583484850044	0.987398016020442	0.995271042049364
Merged-chr10-88681153-4	chr10	88681036	88681236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011461, intron 1 of 5)	B4A|SINE|B4	1887.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	6.77588316046884	6.75969967827898	6.71607761002808	7.12214825909246	7.25464072411945	6.67427017287485	7.56120000085305	6.9777190881007	0.411449082393226	0.096746259821028	0.340703642776615
Merged-chr13-21168087-4	chr13	21167962	21168162	+	868.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11869.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	4.27854876730645	3.9440533950695	3.76370940953795	3.8021141026286	4.18937022114629	4.19472961753895	3.85837035634483	3.81793553123217	0.206213752982889	0.65142632507144	0.853936064978361
Merged-chr5-117904164-4	chr5	117904051	117904251	+	942.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 8 of 27)	intron (NM_008712, intron 8 of 27)	37312.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	4.47776633622703	4.37269487731759	4.79317202965508	4.82197908632449	4.655181849257	4.69684470139491	4.83727266365938	4.51943956153907	0.0816741099920232	0.823304536376167	0.932247237471869
Merged-chr5-3421060-4	chr5	3420938	3421138	+	953.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 3 of 7)	intron (NM_009873, intron 3 of 7)	77145.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	4.70902630665978	4.53587723535225	4.13737152753197	4.16861610578001	4.92085810602323	5.09506647988143	5.18738512369656	4.78178065235708	1.28180130408271	0.000536176719333915	0.00816702818435025
Merged-chr17-35262986-4	chr17	35262883	35263083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010380)	promoter-TSS (NM_010380)	-111.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	9.83127537243581	10.2822468412286	9.7432446606453	9.44910777596977	8.69133114940233	8.83427681492357	8.52238833961926	8.50292983381698	-1.50033198016158	7.56920474060179e-14	1.01364015984453e-11
Merged-chr10-62486064-4	chr10	62485984	62486184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358543, intron 1 of 7)	intron (NM_001358543, intron 1 of 7)	514.0	NM_001113355	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	5.08258317804609	5.09336582384705	5.33903168340579	5.21520087990937	5.44617301498068	5.36007480161006	5.16001983709724	5.47215463065294	0.328785968008828	0.258204149399041	0.570006300594682
Merged-chr1-127135938-4	chr1	127135830	127136030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69056.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	5.90414925156341	5.4009058717942	6.14248173317537	5.95471344357522	5.54588638727069	5.55131826149048	5.71346038099099	5.85666596035131	-0.341267791370803	0.233907023300672	0.543578569705785
Merged-chr16-36661785-5	chr16	36661647	36661847	+	850.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	MLT1C|LTR|ERVL-MaLR	4330.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	3.45421117775711	3.58989691046675	3.04550550872213	2.88155923743646	3.13611443274824	3.28952609755023	3.22433971626527	3.29288811161281	-0.133356003798787	0.825362632686195	0.933084142489847
Merged-chr14-17402996-3	chr14	17402896	17403096	+	840.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-257964.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	3.83173302436359	3.77255601690546	3.72546904395255	3.97728481998629	3.77462970426539	4.39077734992298	3.71079909564343	3.54547711026	0.160362786736878	0.748734355544041	0.901063036615673
Merged-chr16-32087811-4	chr16	32087712	32087912	+	949.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024464, intron 3 of 5)	intron (NM_024464, intron 3 of 5)	-8470.0	NM_177326	224105.0	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 (RAC1) activated kinase 2	protein-coding	4.92528364242876	5.21391577049221	4.57230585327737	4.9627725775643	4.89948045417352	4.8750567152324	4.93628063455156	4.73743397868444	-0.159732066518037	0.640147958683539	0.847990835262047
Merged-chr10-44691745-4	chr10	44691630	44691830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-232982.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	7.75802404393682	7.63758336968616	7.61851166289983	7.50906835421796	7.14650366131004	7.21716367527634	7.30488225812502	7.09804611352598	-0.583296732839785	0.00107772339024095	0.0142718883001616
Merged-chr9-21136590-4	chr9	21136520	21136720	+	963.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5345.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	5.0199398825499	5.21034944845927	5.30738166285815	4.75628935308892	5.64718907036304	4.9250782930795	5.30868816288665	4.98123050474351	0.345251645158674	0.327935774544681	0.639283008690489
Merged-chr11-90492279-4	chr11	90492185	90492385	+	921.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011505, intron 17 of 17)	intron (NM_011505, intron 17 of 17)	-101368.0	NM_172563	217082.0	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	4.14264635646205	4.39689711060574	4.14322335331024	4.5090202742361	4.76738331547026	4.64928178655335	4.75120567542254	4.59366419129357	0.815526742832432	0.0316782336910197	0.173541522042107
Merged-chr6-57711966-2	chr6	57711866	57712066	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133737, intron 1 of 8)	intron (NM_133737, intron 1 of 8)	9511.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	3.05329193986431	3.04549100896279	2.99314777464998	2.64561714094695	3.03290955107402	2.97193895898458	3.15366566599914	3.10979992070779	0.565402121128559	0.352745422401017	0.659679630621423
Merged-chr2-132114697-4	chr2	132114606	132114806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	30402.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	6.47631964532913	6.50801035423139	6.78814162546853	6.91589998785532	6.95746914373444	6.65386121397951	6.49591097790123	6.69781877177866	0.0337964931033749	0.883705174261241	0.956342055191766
Merged-chr1-61638907-4	chr1	61638827	61639027	+	887.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081050, exon 1 of 23)	5' UTR (NM_001081050, exon 1 of 23)	103.0	NM_001081050	72823.0	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	5.94976847845743	5.82681102444896	5.50910106607836	6.03037656392795	4.55978934415734	4.87821325734071	5.04681882001641	4.86867282401205	-1.86993947836172	4.47590446716057e-09	2.53856895671731e-07
Merged-chr6-91741116-4	chr6	91741001	91741201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 8 of 14)	intron (NM_009320, intron 8 of 14)	57034.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	6.7178034580666	6.84846665455389	7.00869064155015	7.22332064202136	6.19368324212062	6.28326763000979	6.57693629064263	7.06112261761403	-0.567441521779152	0.032419535336153	0.176274610205639
Merged-chr6-122602898-5	chr6	122602840	122603040	+	914.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031159)	promoter-TSS (NM_031159)	-496.0	NM_001134391	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	3.17737979963274	3.46231259562816	3.31318567817036	3.39094544261086	3.50797061171337	3.61147312821763	3.58689210795389	4.03336999576925	1.13840753805415	0.0291149747901092	0.16404454924287
Merged-chr12-3781633-4	chr12	3781525	3781725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_149729, exon 19 of 19)	non-coding (NR_149729, exon 19 of 19)	-25355.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	7.27494737844469	7.316764659425	7.30764482053922	7.29723719594717	7.43002384828398	7.22108669894894	7.30180478208653	7.12526165529972	-0.0237734346659266	0.895092995414669	0.96073210268323
Merged-chr7-4647500-4	chr7	4647429	4647629	+	885.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172894, intron 1 of 23)	intron (NM_172894, intron 1 of 23)	11421.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	3.9657565571639	3.76970903743375	3.91489838821153	4.0879354443743	4.30206618183644	4.18707324299087	4.04586334579461	4.06096074473173	0.544047814505269	0.199959447386436	0.50185984431534
Merged-chr11-110464591-1	chr11	110464491	110464691	+	540.0	f0_c57.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	-13924.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	2.4916351001417	2.56361535337404	2.64405974270476	2.14266668703584	3.02166999383207	3.19053314141537	2.89368824319369	2.90435163812287	2.91568736275026	0.000258788146804213	0.00449604137207154
Merged-chr1-72019068-1	chr1	72018968	72019168	+	768.5	f0_balb.idr	Intergenic	Intergenic	-13873.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	3.37253035079509	3.15238019264609	3.52869990270752	3.5469871626893	3.24580963559651	3.24090585829849	3.30426682245118	3.37115700947716	-0.449477833270206	0.403288361343953	0.700700507615324
Merged-chr8-104442427-4	chr8	104442323	104442523	+	904.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013380, intron 2 of 12)	intron (NM_001013380, intron 2 of 12)	624.0	NM_001013380	234663.0	Mm.289583	NM_001013380	ENSMUSG00000035770	Dync1li2	AA409702|C920003I06|Dncli2|Dnclic2|LIC2	dynein, cytoplasmic 1 light intermediate chain 2	protein-coding	4.32442755295142	4.55769010152912	5.22906534225792	4.52622645860834	4.29842123082076	4.59606993774692	4.25714832168605	4.58589801242911	-0.57642889113419	0.169645264763411	0.462321889663741
Merged-chr5-105902898-2	chr5	105902815	105903015	+	695.299988	f1_balb.idr|f1_c57bl6.idr	intron (NR_030777, intron 5 of 9)	L1_Rod|LINE|L1	26347.0	NM_018759	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	2.89617123150465	2.80159548980234	2.89652890730763	2.7594377509954	2.94160341012278	2.73022099348608	3.10686102641213	2.89508235505592	0.413651180015625	0.495926191996623	0.766025331518119
Merged-chr3-38519602-3	chr3	38519499	38519699	+	671.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-34783.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	3.74871378305474	3.418747804403	3.79554124171928	3.58689221859611	3.82854167108059	3.19924337739148	3.58487390924177	3.48682203395007	-0.275671163417277	0.60845795641338	0.830675049522223
Merged-chr16-32202826-4	chr16	32202717	32202917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23017.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	7.38016071861771	7.7249633985733	7.16517214743956	7.20199639124749	7.43881408883253	7.37748918085605	7.39329035642471	7.28361987426607	-0.0117698022273238	0.953552153937036	0.983444766711298
Merged-chr4-129130307-4	chr4	129130221	129130421	+	726.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6678.0	NM_027402	384061.0	Mm.44075	NM_027402	ENSMUSG00000001334	Fndc5	1500001L03Rik|AI836596|C87088|PeP|Pxp	fibronectin type III domain containing 5	protein-coding	4.30354177495887	4.44858205541989	4.25786584046197	3.72382927500774	4.61059979858898	4.43374503401286	4.56662465269096	4.47160918968747	0.780636609869332	0.0637680323799421	0.268195744314104
Merged-chr17-72939678-4	chr17	72939581	72939781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029999, exon 3 of 3)	3' UTR (NM_029999, exon 3 of 3)	21376.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	5.63552665566066	5.34911333410678	5.29364492557298	5.28825450127759	5.11391589774881	5.16537021557433	5.29716897365702	5.25931690759584	-0.334104577980615	0.254711226918392	0.566151176984747
Merged-chr3-75553323-4	chr3	75553226	75553426	+	678.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019745, intron 1 of 7)	intron (NM_019745, intron 1 of 7)	3526.0	NM_019745	56426.0	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	3.95390796248562	3.56217290716558	4.17228878067247	3.65890894810324	3.79574065752448	3.75231560475989	3.9832958090251	4.12894669010173	0.207554264970935	0.664551982315966	0.861009602629657
Merged-chr5-120578902-3	chr5	120578787	120578987	+	902.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145853, intron 2 of 27)	intron (NM_145853, intron 2 of 27)	9726.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	3.95068161356113	3.61953701442305	3.60039737286296	3.80762457328894	3.62748264703677	3.77479743638298	3.58694187164273	3.94880066868965	-0.0477014553736145	0.91985547203171	0.970406583631903
Merged-chr15-39362260-4	chr15	39362136	39362336	+	725.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053271, intron 5 of 26)	intron (NM_053271, intron 5 of 26)	163950.0	NM_053271	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	3.96132576582053	4.05402712885777	4.35033836179938	3.98758878680829	4.19997361660543	3.97797938508179	3.84171810916429	3.90819688090165	-0.244960701111814	0.576219813763339	0.813446739194192
Merged-chr1-177940660-2	chr1	177940560	177940760	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50738.0	NR_155538	545391.0	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	3.14342020726495	2.9313864971667	2.95750145796138	3.34777185151711	3.05346322807124	3.13117031380019	3.07379523076792	3.30454076632983	0.091421526434042	0.877607661384379	0.954222713700335
Merged-chr6-129532730-4	chr6	129532649	129532849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020590)	promoter-TSS (NM_020590)	-443.0	NM_020590	57436.0	Mm.14638	NM_020590	ENSMUSG00000030161	Gabarapl1	3110025G09Rik|9130422N19Rik|AI196471|Apg8l|Atg8l|GECI|MNCb-0091	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1	protein-coding	6.17210552975634	5.89580045890649	5.60774519003689	5.73118834689677	5.58214136346063	5.83722246475285	5.57952837247101	5.5760766243439	-0.358956060015551	0.190018279960807	0.489103163231511
Merged-chr17-71257341-3	chr17	71257237	71257437	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	52683.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	7.1107752211428	7.47716007355824	7.42805555918915	7.3254415264648	4.48083413292718	4.68426858564054	4.44136628909316	4.75963532899886	-4.9857907745173	3.36898686839807e-43	1.71286511646933e-39
Merged-chr19-32384931-4	chr19	32384830	32385030	+	889.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 1 of 9)	intron (NM_144792, intron 1 of 9)	3119.0	NM_001362423	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	4.4193497452449	4.19677667737181	4.19149068116162	4.48381663253873	4.38570808220872	4.46163308520818	4.55565115945144	4.49822530914898	0.304851287297183	0.420171261136727	0.713149967724232
Merged-chr3-100488471-4	chr3	100488371	100488571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142952, intron 1 of 1)	CpG	721.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	5.91088045136857	5.48022330403218	5.79829275360048	6.09805759930657	5.75162066464353	5.55928603089601	5.81522647629353	5.79417540652811	-0.19542389473876	0.479701108593293	0.755385933410391
Merged-chr18-64936226-3	chr18	64936092	64936292	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	48436.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	3.29373376806634	3.38317423851005	3.24005964256363	3.29639342216584	3.05678190465533	3.03632577996713	2.98826944018343	3.06098446183807	-1.08354111230784	0.0561403142422782	0.247994545819749
Merged-chr14-20798946-4	chr14	20798852	20799052	+	902.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4713.0	NR_153779	102631887.0	Mm.122292	NR_153779	ENSMUSG00000114241	Gm30108	-	predicted gene, 30108	ncRNA	4.44035139688442	4.75233195803172	4.6186156766374	4.92743622753956	4.86131609847987	4.70886966278448	4.82286191507385	4.80772595732703	0.179194559145642	0.609954558284866	0.831398279446287
Merged-chr17-63863861-4	chr17	63863728	63863928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037997)	promoter-TSS (NM_001037997)	-153.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	8.98886430440526	9.07762986241355	9.1925004331059	9.29923672458616	9.11760227337091	9.24619896915943	9.51609670643854	9.16174566974299	0.148662905007513	0.357717384666045	0.663837540417421
Merged-chr6-88906941-4	chr6	88906851	88907051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011906, intron 2 of 11)	intron (NM_011906, intron 2 of 11)	4700.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	5.46733022623277	5.60280821656576	5.31696854272626	5.36648442687854	5.83476016363395	5.69848768212054	5.41238335837765	5.72282663194298	0.418149422258455	0.12816813672011	0.398413826692318
Merged-chr5-135134706-4	chr5	135134617	135134817	+	870.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152882, intron 15 of 16)	intron (NR_152882, intron 15 of 16)	-14994.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	3.69065112804749	4.20649651690083	3.92211224889043	3.8281856427567	4.03268092688965	4.37619717754081	4.2690499189758	4.11623520921702	0.721583520913931	0.0974178446357589	0.342002701027309
Merged-chr17-17871855-4	chr17	17871765	17871965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12074.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	7.3584854047283	7.66435072024957	7.40063031681375	7.53588607285108	7.53934363813519	7.70207513940196	7.64141505402046	7.32309818229728	0.0764638437313076	0.678932526010976	0.868233840147542
Merged-chr11-46437479-3	chr11	46437384	46437584	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001104556, intron 1 of 1)	CpG	523.0	NM_025426	66213.0	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding	4.8253227110169	5.26381599982126	5.30717127844111	4.87288425212363	4.83319300946657	5.00213231696123	4.80343212258169	4.93472906083961	-0.362733544690743	0.279435838365149	0.591495502480744
Merged-chr11-70540106-4	chr11	70540035	70540235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008876)	promoter-TSS (NM_008876)	71.0	NM_001361935	18806.0	Mm.260177	NM_008876	ENSMUSG00000020828	Pld2	PLD1C	phospholipase D2	protein-coding	7.46330213195679	7.47863716971628	7.07318789423869	7.27038552737983	7.16637985633634	7.23811639596618	7.33362935260231	7.01758710808371	-0.18643860258577	0.339345684899424	0.648698442472301
Merged-chr13-73508900-3	chr13	73508792	73508992	+	753.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 9 of 13)	intron (NM_145376, intron 9 of 13)	-27855.0	NM_010020	13162.0	Mm.41993	NM_010020	ENSMUSG00000021609	Slc6a3	DAT|Dat1	solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	protein-coding	3.18688216285355	2.9680155839761	3.02309815285045	3.11909064414604	2.71954173706305	2.79791371573949	3.12194107914472	2.76440317286403	-0.970321727131036	0.124878224334221	0.392224226705601
Merged-chr5-36563970-4	chr5	36563871	36564071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	18426.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	6.05429999622634	5.94218666716554	6.77392764397491	6.63355414906481	6.01614554951689	5.59888122163852	6.33360738037949	6.29099098894127	-0.474008512975753	0.122001104163961	0.387156334965964
Merged-chr5-22917430-3	chr5	22917379	22917579	+	963.9166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359998, intron 1 of 3)	intron (NM_001359998, intron 1 of 3)	-170595.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	3.1199752769461	3.02979328746475	3.12030557787011	2.78875034664989	4.56769076427003	4.22588849804367	4.37687836486854	4.43132105048034	4.98842660292456	2.16487128975639e-13	2.63858516324606e-11
Merged-chr10-68282632-4	chr10	68282533	68282733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3907.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	6.32225963812471	6.44198429415356	6.53696268954975	6.36521282482186	6.59894304477196	6.89473641273384	6.72679351562344	6.58044242667222	0.414703071310923	0.0498072268884869	0.231125145230824
Merged-chr3-89349265-3	chr3	89349188	89349388	+	855.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029974)	TTS (NM_029974)	740.0	NM_001037722	11490.0	Mm.274049	NM_009614	ENSMUSG00000028041	Adam15	AD56|MDC15	a disintegrin and metallopeptidase domain 15 (metargidin)	protein-coding	3.23260141103089	3.17208500602664	3.28978181841485	3.50884855384683	2.95456528998468	3.22166120935963	3.10116276095326	3.39424690769328	-0.542983668319649	0.345972283438918	0.654307575495964
Merged-chr17-21536268-4	chr17	21536160	21536360	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131123)	promoter-TSS (NR_131123)	-382.0	NR_131123	319870.0	Mm.488274	NR_131123	ENSMUSG00000097781	9330136K24Rik	-	RIKEN cDNA 9330136K24 gene	ncRNA	5.34992269239966	5.12762997889084	5.11270950134188	5.19123020628514	4.95200364231978	5.18526595587914	5.08777714361898	4.97114240899508	-0.286874527769884	0.342908173862866	0.6516462545027
Merged-chr11-76588248-4	chr11	76588129	76588329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10490.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	7.76204492289537	8.08331426752689	7.69917571553868	7.64450634047771	7.64959124702409	7.85162785742591	7.69400886064916	7.47899648732912	-0.173681668074845	0.357702789109485	0.663837540417421
Merged-chr2-154656923-4	chr2	154656836	154657036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029362)	promoter-TSS (NM_029362)	-90.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	8.29213584857477	8.55763590862019	8.4486132142062	8.23159681249775	8.44862138628657	8.45399009975841	8.52896776084045	8.17488118645475	0.0300740992370016	0.858021280539769	0.946496029407037
Merged-chr17-67345380-4	chr17	67345277	67345477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	MTD|LTR|ERVL-MaLR	9082.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	8.11798147042519	8.06529142922269	8.37489419254745	8.3999980896835	8.21733024741992	8.17804216630462	8.13609816674522	7.68157337112218	-0.228059798196569	0.229944023306594	0.539096658041788
Merged-chr4-122996336-3	chr4	122996175	122996375	+	741.1190190000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008506, exon 1 of 2)	5' UTR (NM_008506, exon 1 of 2)	344.0	NM_008506	16918.0	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	2.95557961203166	2.61823445774159	2.95597971656672	2.4710295694204	2.97334852399743	3.18551326583657	2.94440618313866	2.89262439750999	1.08896922905558	0.0993664296551813	0.345722474201968
Merged-chr11-101641474-4	chr11	101641380	101641580	+	844.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	13531.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	3.28944011868239	3.46849501455963	3.46405498579679	2.97066956278965	3.48598067908749	3.52532524744429	3.77868880429281	3.1582835246363	0.679461225495483	0.231981112662855	0.541596156462522
Merged-chr8-13841568-4	chr8	13841468	13841668	+	974.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3479.0	NM_153093	231201.0	Mm.423959	NM_153093	ENSMUSG00000057116	AF366264	Susp4	cDNA sequence AF366264	protein-coding	4.87088129147426	4.52728371270346	4.6620719908922	4.95792683563485	4.5572199836261	4.22699960477222	4.52185406800432	4.53965866290256	-0.661188571641129	0.0757023175595418	0.297192565000787
Merged-chr6-39562383-4	chr6	39562288	39562488	+	857.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4554.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	3.9784325513308	3.98570173200522	3.87837406991769	4.1701057159603	4.32165041611357	3.82984828282392	3.69783643423726	4.02409255053611	-0.0325817797621753	0.943939745667304	0.979869724756859
Merged-chr6-134701000-4	chr6	134700910	134701110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170479, intron 3 of 3)	intron (NM_001170479, intron 3 of 3)	60070.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	7.72982428910594	7.86673444443314	7.6076436279882	7.41049771952577	7.68569419630288	7.76747040257315	7.4240282476538	7.32248403330188	-0.123086717862211	0.537804769977863	0.791238016328278
Merged-chr12-100778963-4	chr12	100778850	100779050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361020)	promoter-TSS (NM_001361020)	-107.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	6.92948980272289	7.66303214108451	6.78209598282206	6.43111455295315	6.72205610668932	7.16956191063566	6.65864977773847	6.06657707846096	-0.454906124555163	0.341638384458097	0.650639445837748
Merged-chr14-52023080-6	chr14	52022986	52023186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2353.0	NM_027248	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	5.15378431953299	5.46370939448335	5.22007539222479	5.10174681176698	5.20027401293997	5.51445161803933	5.16239459391633	5.39448149974037	0.151179503776238	0.614045053548846	0.833609107549057
Merged-chr1-139065425-4	chr1	139065323	139065523	+	957.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166501, intron 9 of 21)	intron (NM_001166501, intron 9 of 21)	87766.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	4.7773251833176	4.70546881133537	4.96094591615829	5.61484031590883	4.5840106238413	4.83318694714345	4.58975598472416	5.05573534945134	-0.622817209728091	0.121147967522133	0.385390724845415
Merged-chr10-128792193-1	chr10	128792093	128792293	+	565.0	f0_c57.idr	intron (NM_021412, intron 2 of 8)	B2_Mm2|SINE|B2	1238.0	NM_021412	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	3.70058944862143	3.21620383540811	3.44552620010785	3.1123692620646	3.54697718368033	3.72414019710429	3.53891686474384	3.26246452714959	0.501846105264505	0.36088870508468	0.666130694735743
Merged-chr11-93885781-4	chr11	93885697	93885897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134012)	promoter-TSS (NM_134012)	-31.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	7.97219409494321	8.13505785023727	7.35060713000177	7.53404764437958	7.66211448988573	8.29681679244984	7.94851909392019	7.69095474006797	0.178012663090645	0.456381388100528	0.739803480382772
Merged-chr17-31594787-4	chr17	31594686	31594886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027493, intron 6 of 11)	L1MD|LINE|L1	30013.0	NM_016670	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	7.04867751349893	7.10832714226092	6.87676015434764	7.38592974448513	7.2988731278096	7.36767574471686	7.01438646105075	7.27181362821679	0.151169924395473	0.466718620402925	0.746483522894369
Merged-chr11-76611059-3	chr11	76610957	76611157	+	860.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33318.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	3.69940488768956	3.54659179574483	3.20310533357347	3.18159773966685	3.62361140608494	3.38186983290453	3.43417509760373	3.50028357852735	0.249855400037861	0.642335450920259	0.849120718759996
Merged-chr3-22090559-4	chr3	22090477	22090677	+	832.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	13925.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.93906380628208	3.83506554898706	4.08188047834972	4.08535208155487	4.19714657663198	4.1584383665418	3.8209102256905	3.88640793375579	0.101798707386645	0.815446247001611	0.928771536712768
Merged-chr2-33962225-3	chr2	33962119	33962319	+	854.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-74273.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	2.85271678589749	2.83956851181651	2.85299155775022	3.02281857102101	3.28735313351038	3.16211394579467	3.26262028222661	3.3251298451799	1.41232578699321	0.0166911002817026	0.113152879696998
Merged-chr5-34948932-1	chr5	34948832	34949032	+	744.0	f0_c57.idr	promoter-TSS (NM_173402)	promoter-TSS (NM_173402)	-516.0	NM_173402	71729.0	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	4.67394831612355	4.39843471659843	4.71148158034066	4.18368238353538	4.47057037578749	4.69060713002127	4.94703985661602	4.42596292501986	0.340037182708067	0.387193315127531	0.688133554203897
Merged-chr18-82914429-7	chr18	82914273	82914473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177464)	promoter-TSS (NM_001177464)	-259.0	NM_001177464	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	6.10795729152862	6.42517010955663	6.64294407977566	6.44990193985705	6.62330108251416	6.78828591060036	6.53198727668355	6.8063521092412	0.386682574669196	0.0835676055441359	0.314301921439512
Merged-chr9-7558383-4	chr9	7558284	7558484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008611)	promoter-TSS (NM_008611)	-45.0	NM_008611	17394.0	Mm.16415	NM_008611	ENSMUSG00000005800	Mmp8	BB138268	matrix metallopeptidase 8	protein-coding	6.10108191294207	6.18578775545211	6.44522894223125	6.85233391132033	6.40665995010342	6.01620905011329	6.63919419265734	6.03044039199099	-0.211459291923064	0.46014001005203	0.742446973194303
Merged-chr16-87354339-4	chr16	87354227	87354427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159331, exon 1 of 5)	exon (NM_001159331, exon 1 of 5)	142.0	NM_026366	67768.0	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding	7.85292293169318	7.64329785597903	8.27465884182439	7.73469611628115	7.46818479897023	7.80688856248395	7.73283561087004	7.84892536202673	-0.230430079768784	0.262396417671925	0.574213981359762
Merged-chr19-3924612-4	chr19	3924515	3924715	+	801.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026316, intron 1 of 9)	intron (NM_026316, intron 1 of 9)	5101.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	3.74888706001352	3.86313294860954	3.89943489074412	3.64646911899476	3.94584159189812	3.35400050399473	3.83496564542496	4.07261186314631	0.13166870111348	0.790553016884078	0.918840742585233
Merged-chr8-41045297-3	chr8	41045204	41045404	+	862.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 5 of 13)	intron (NM_001005863, intron 5 of 13)	-3373.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	4.48578298508672	4.46003006097302	4.48651317643514	5.0331675685995	3.98861106229605	4.35072567131963	3.81423937052532	4.35829197477077	-1.22354027220337	0.00560992235601372	0.0517306209844152
Merged-chr9-99143109-4	chr9	99142986	99143186	+	907.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-2875.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	4.44780885864909	4.05592377773469	4.60615461819097	4.70497301135491	4.36747558934094	4.49084047195086	4.29720741601229	4.60309492238025	-0.103857202065587	0.796207280990581	0.921052599307061
Merged-chr15-74925102-5	chr15	74925092	74925292	+	820.3905030000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29859.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	3.05915678392284	2.95105743421863	2.9983271969127	2.58258696968727	3.13060496290931	2.97697223301465	2.98740170539538	3.37388296727236	0.938351425902685	0.136090264875591	0.410493185441953
Merged-chr3-38143710-4	chr3	38143603	38143803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64416.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	5.81218949685518	5.7994097233677	6.02469281743625	6.41295622110497	5.9283409469825	5.93941445061633	6.36373499840811	6.21994659347667	0.100132682882319	0.720283554001068	0.888243884856927
Merged-chr11-34060193-4	chr11	34060082	34060282	+	679.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 3 of 20)	intron (NM_010696, intron 3 of 20)	13254.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	3.88005889843852	3.90063693475098	4.02508403582153	3.59335789477927	4.01876782448363	3.77840361309177	3.9138500163304	4.19239843399942	0.3970102986606	0.381328916698537	0.683563058438105
Merged-chr6-113761865-4	chr6	113761736	113761936	+	914.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 15 of 19)	intron (NM_001036684, intron 15 of 19)	-21155.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	3.79858736772084	3.99820432941866	3.6272207739839	4.01461658443034	3.75658254366514	4.07508980973956	3.98367084454747	4.32040434178243	0.455518235465464	0.328933318530784	0.640175667287415
Merged-chr1-91038191-4	chr1	91038090	91038290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-15254.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	6.6761779740605	6.76213686267812	6.60018040922608	6.64627431326313	6.76505735853922	6.53295210131735	6.95776149088798	6.29113051232904	-0.00816562950395162	0.97137801745704	0.989667458652484
Merged-chr11-102430381-4	chr11	102430285	102430485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008175)	promoter-TSS (NM_008175)	63.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	8.27175894648066	8.40631379745238	7.74659699183866	7.91559261762458	8.23158374515438	8.40600752103965	7.81330594921177	7.7744602253922	-0.0320229893169825	0.886862603583239	0.957513044740158
Merged-chr19-4741795-3	chr19	4741663	4741863	+	815.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021287, intron 19 of 36)	LTR16C|LTR|ERVL	-14762.0	NM_025717	66704.0	Mm.396734	NM_025717	ENSMUSG00000033760	Rbm4b	4921506I22Rik|AI504630|AI506404|Lark2|Neosin	RNA binding motif protein 4B	protein-coding	3.35201331264963	3.38073222755415	3.51381654810403	3.42814446483401	3.4004742408954	3.27795611345468	3.2823574052938	3.51179368683746	-0.163223740497878	0.749963037899039	0.901564247164595
Merged-chr3-87401454-4	chr3	87401396	87401596	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310545, intron 10 of 10)	intron (NM_001310545, intron 10 of 10)	25109.0	NM_178165	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	4.38361918068468	4.10665983737426	4.57541510280577	4.03203716059305	5.19676601463622	5.1007759967574	5.22684197394697	5.39876760396292	2.02865074836489	6.75595130457169e-09	3.72776634037293e-07
Merged-chr7-127289516-3	chr7	127289415	127289615	+	891.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6745.0	NM_001253873	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	3.81870278792835	4.13068903170086	3.52629371415118	2.95313210209391	4.10106925644994	3.99611086836814	3.95034342452441	4.09952738551923	0.967157404097141	0.0966532917209444	0.340574096588254
Merged-chr5-20932821-4	chr5	20932711	20932911	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	PB1|SINE|Alu	-18178.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	5.48644249445314	5.66989007886013	5.5152486417776	5.9056764532824	5.47513927718141	5.63391708199038	5.14445352392794	5.42599693579624	-0.415955480445354	0.153775657788051	0.438666140818199
Merged-chr2-25422754-4	chr2	25422584	25422784	+	906.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289453)	promoter-TSS (NM_001289453)	-558.0	NM_001289453	14347.0	Mm.1203	NM_013524	ENSMUSG00000036587	Fut7	AI853193|FTVII|Fuc-TVII|FucT-VII	fucosyltransferase 7	protein-coding	3.74745018381247	3.41732720536226	3.60236400983186	3.24773497579559	3.50888795109731	3.5538456437231	3.36612850868395	3.65060906734279	0.0621046808629939	0.904763022130934	0.964691960037782
Merged-chr3-121693477-4	chr3	121693388	121693588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22725.0	NM_001033814	619318.0	Mm.371258	NM_001033814	ENSMUSG00000074248	4930432M17Rik	-	RIKEN cDNA 4930432M17 gene	protein-coding	6.19671351909314	5.79077871217419	6.15924422464456	6.27688072486138	6.18042983771981	6.23271316644964	6.00508185903301	5.89497612914525	-0.0595741494726849	0.812506975513702	0.927620601323096
Merged-chr5-90909171-4	chr5	90909068	90909268	+	981.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5269.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	4.59145340353987	4.5012323690747	4.10365543460971	4.62932348718378	4.9869050880436	4.98678003050925	4.92158517565698	4.26718816941317	0.731860485590493	0.070794615802129	0.285242270926058
Merged-chr7-62420150-1	chr7	62420050	62420250	+	782.0	f0_balb.idr	promoter-TSS (NM_011746)	promoter-TSS (NM_011746)	-11.0	NM_011746	22652.0	Mm.146	NM_011746	ENSMUSG00000070527	Mkrn3	D7H15S9-1|Zfp127	makorin, ring finger protein, 3	protein-coding	2.83338410804518	2.79208616173106	3.05858169902741	3.30921780510161	2.5569155596699	2.58742097341173	2.62782973112455	2.63400634307841	-2.204925304335	0.00271753062858102	0.0295665049410634
Merged-chr1-157443896-3	chr1	157443759	157443959	+	820.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14709.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	3.18923357727854	3.07291914089816	3.18967296648926	2.99906629654018	2.97005451951705	3.41286404297411	2.79064076329361	3.18789593051505	-0.013209568705459	0.982589438649683	0.99381504303582
Merged-chr10-100032232-2	chr10	100032132	100032332	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347156, intron 1 of 8)	PB1D9|SINE|Alu	16411.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	2.72220834486306	2.70251837412716	2.97248202376684	2.56409924272295	2.80270502347809	2.89810172336929	2.90304203866426	3.02629887169736	0.77958493032962	0.21530600070657	0.521409425159669
Merged-chr18-69655651-3	chr18	69655539	69655739	+	927.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 14 of 19)	intron (NM_001361128, intron 14 of 19)	-269920.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	4.78542684598069	4.6936652673261	4.47688697877418	4.6741277048414	3.77545255527541	4.0828850696611	4.0503954625868	3.76894988690887	-1.91369092446727	7.12905259890042e-06	0.000203790696761901
Merged-chr16-91834245-4	chr16	91834170	91834370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 16 of 28)	URR1B|DNA|hAT-Charlie	97360.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	5.59956757218311	5.77630725942424	6.08353521847204	5.52943913588542	6.00593841681712	5.74961973127792	5.95360420912792	5.67789537332139	0.178913850236286	0.514985717073869	0.777338373814592
Merged-chr16-38773040-3	chr16	38772949	38773149	+	621.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178924)	TTS (NM_178924)	27154.0	NM_178924	22268.0	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	3.58980240966876	3.65411040766896	4.10591686615357	3.68257035176881	3.78160026932587	3.45151059641962	3.78668135289256	3.75072689992228	-0.19467096965304	0.692235144380004	0.87482210361352
Merged-chr4-95250303-4	chr4	95250220	95250420	+	891.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-198098.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	3.87642577762755	3.86527190102418	3.92917345279061	4.15553901323567	3.61416312811196	3.76528782960919	4.22508229965235	4.46090629693026	0.239421053029445	0.627810068363317	0.84134133853166
Merged-chr9-83905944-2	chr9	83905844	83906044	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19193.0	NM_001305935	12040.0	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	2.66757829683001	2.57974601102532	2.66791158799753	2.70654716335368	2.52417772936945	2.5001751634225	2.59718820190883	2.53960623328522	-0.626739685266695	0.348704398385597	0.656399396310486
Merged-chr4-121009339-4	chr4	121009234	121009434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	7913.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	6.66200710026389	6.36180351519298	6.13672074216934	6.40545570059258	6.56115710657475	6.45737895490451	6.37710393576955	6.4900436250427	0.106677682069484	0.635181103918566	0.845633612363053
Merged-chr4-97777755-4	chr4	97777665	97777865	+	996.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001122953, exon 1 of 10)	5' UTR (NM_001122953, exon 1 of 10)	139.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	5.50874143058039	5.34995811074057	5.97816962273171	5.67502564610273	5.28889347887058	5.16335529136604	5.36954906552679	5.33214061908614	-0.622542452584978	0.0358052368479013	0.187974822719522
Merged-chr11-21220920-4	chr11	21220821	21221021	+	976.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18111.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	5.69228326287281	5.78612580939843	4.98163447041931	5.83307388060761	5.87155137401872	5.46668844360277	5.68880923171408	5.80756791611081	0.157350299344167	0.616028384828826	0.834791996415699
Merged-chr18-80468599-4	chr18	80468476	80468676	+	919.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 1 of 12)	intron (NM_026295, intron 1 of 12)	1091.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	4.46106090013789	4.49084961282444	4.62346763063579	4.62078515594285	4.46084150620109	4.45411360368576	4.52430546502365	4.69406141605161	-0.0497073712309678	0.889093138024	0.958453390552649
Merged-chr9-21852660-4	chr9	21852543	21852743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177030)	promoter-TSS (NM_177030)	-8.0	NM_177030	319899.0	Mm.128153	NM_177030	ENSMUSG00000032198	Dock6	2410095B20Rik|4931431C02Rik|C330023D02Rik|mKIAA1395	dedicator of cytokinesis 6	protein-coding	7.42330652757926	7.66896406292857	7.44354345667225	7.29733712654959	7.33372384739458	7.13304717228316	7.41601274334389	7.08160319880374	-0.279173800628385	0.149420115779561	0.431673610726251
Merged-chr1-59684962-4	chr1	59684875	59685075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018868)	promoter-TSS (NM_018868)	-31.0	NM_018868	55989.0	Mm.220367	NM_018868	ENSMUSG00000026020	Nop58	MSSP|Nol5|SIK|nop5	NOP58 ribonucleoprotein	protein-coding	6.78235492622271	7.14703051638212	6.69109075470213	6.83519204384447	7.10712209282032	7.36292038869738	7.01476221697394	7.06915112617039	0.365829772844232	0.0778577674514415	0.301711565190884
Merged-chr1-91080518-4	chr1	91080421	91080621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 6 of 22)	intron (NM_008515, intron 6 of 22)	27077.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	8.64862788859021	9.17126689389002	9.07209605601092	8.84783738543133	8.88370608686113	8.85959085960696	9.0054152626562	8.66277946477654	-0.113387439229518	0.514887177340725	0.777296530332344
Merged-chr16-25059798-2	chr16	25059698	25059898	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040374, exon 1 of 3)	non-coding (NR_040374, exon 1 of 3)	159.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	3.5051605334151	3.6432918114039	3.973837175845	4.12638735251643	3.86098425372864	3.68297909361708	3.71995809185866	3.67920096655831	-0.316056273634289	0.525588910311262	0.783326557236235
Merged-chr12-86046315-4	chr12	86046204	86046404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081423, intron 33 of 33)	L1MB3|LINE|L1	32737.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	7.67077883786971	7.33951824320024	7.79008555138323	7.97598341335085	7.48114037931163	7.3251689537249	7.81071370795489	7.59030184440619	-0.207538766028146	0.323816539732281	0.635324498514402
Merged-chr6-149207279-4	chr6	149207181	149207381	+	621.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18569.0	NM_001113424	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	3.78229622524373	3.64680973447018	4.07641809170461	3.92230467757982	3.95455663119986	4.06002920352186	4.01412512752682	3.93566028561032	0.335783333233523	0.443227769828327	0.729816540867272
Merged-chr10-57794748-4	chr10	57794626	57794826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020561, exon 1 of 8)	exon (NM_020561, exon 1 of 8)	182.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	7.7476535237464	7.98488267590276	8.50001892543282	7.91793664178751	7.4398931340495	8.03532606854686	7.75103416334682	7.59765413867734	-0.45009094645069	0.0449847867658467	0.216795637211065
Merged-chr11-68520086-6	chr11	68520061	68520261	+	884.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004435, intron 1 of 19)	intron (NM_001004435, intron 1 of 19)	17142.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	2.48534653033753	2.75121261713406	2.48558771250838	2.3834098636399	2.45692618111976	2.86140156217862	2.67993486275693	2.86511782994616	0.965366366180185	0.164498535163211	0.454753682544816
Merged-chr4-15958248-7	chr4	15958104	15958304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013752, intron 1 of 15)	CpG	237.0	NM_013752	27354.0	Mm.20866	NM_013752	ENSMUSG00000028224	Nbn	Nbs1	nibrin	protein-coding	7.69067462009166	7.72625015339136	7.7982715050103	7.788300059639	7.98134151872791	8.13043409379749	8.16999758116052	8.0018012957999	0.410135500046647	0.0101882813161425	0.0799814355135885
Merged-chr3-98019485-4	chr3	98019390	98019590	+	795.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	5952.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	4.00502034532126	3.80314284464107	3.70233264916996	4.08272226405184	4.08705927653055	3.76147554077806	3.6885435873994	3.95743786006274	-0.0711821329670991	0.878106530695942	0.9543860856376
Merged-chr3-35754021-4	chr3	35753930	35754130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029570)	promoter-TSS (NM_029570)	-33.0	NR_151626	76295.0	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	7.38561267197623	7.06396660623781	6.95779275262487	7.13323909898138	7.11010393122608	7.05387968666346	7.18146952079985	6.69142334714959	-0.162031775069214	0.440579509240711	0.727944976505159
Merged-chr2-104710919-4	chr2	104710827	104711027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177190, intron 1 of 9)	L2c|LINE|L2	1235.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	5.33829084031508	5.80066440278618	5.06978874640616	5.1913248067479	5.65159984956465	5.6827552712586	5.11762005514509	5.33549534445289	0.161364608759109	0.625887366118005	0.840129896434535
Merged-chr5-104973652-4	chr5	104973564	104973764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030239, intron 5 of 15)	intron (NM_030239, intron 5 of 15)	9053.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	6.36285301908821	5.95402596948783	6.21029808343379	6.38222306315676	6.58669862721697	6.54011204647212	6.72877360706301	6.4466945088081	0.492813162575183	0.0312194471520836	0.171941274283361
Merged-chr8-13106434-2	chr8	13106334	13106534	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146207, intron 2 of 19)	intron (NM_146207, intron 2 of 19)	713.0	NM_146207	99375.0	Mm.212861	NM_146207	ENSMUSG00000031446	Cul4a	2810470J21Rik|AW495282	cullin 4A	protein-coding	4.41147256820839	4.18746680167542	4.69577943660561	4.31183895120349	4.29269749181919	4.71528453763792	4.70855428536082	4.95357085377259	0.608295246024816	0.12294405279876	0.388688648043308
Merged-chr6-17589835-4	chr6	17589714	17589914	+	853.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47196.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	3.97598988459598	3.9264602849202	4.38997463810056	4.21843024879271	4.12656850571514	4.098296202098	4.57976859031681	4.42554599400613	0.442866748884286	0.299710408002424	0.611945631067702
Merged-chr18-60891381-4	chr18	60891287	60891487	+	985.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20853.0	NM_001038499	545260.0	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	5.29505783030249	5.25021017917792	5.17416608319189	5.25256697461802	4.9023765603003	4.85630527374576	5.45638490066508	5.26294478625596	-0.19613442647611	0.53777891517633	0.791223080787503
Merged-chr17-8508486-1	chr17	8508386	8508586	+	881.1666869999999	f0_balb.idr	Intergenic	Intergenic	-18315.0	NM_001290707	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	3.87049791834862	3.61797902745597	3.87117337749662	3.62236162423424	2.84663978800472	2.9439838497016	3.05879474396762	3.13805025352455	-3.27749021547119	2.83006070505049e-06	8.97286819264093e-05
Merged-chr17-32891701-4	chr17	32891570	32891770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207245)	promoter-TSS (NM_207245)	-67.0	NM_207245	240066.0	Mm.26636	NM_207245	ENSMUSG00000095325	Zfp870	AI173952	zinc finger protein 870	protein-coding	5.32962006729565	5.18806640126322	5.20894950766534	5.08427099433562	5.23580719949084	5.55912354672346	5.15131745296117	5.26755431528401	0.205223946207757	0.488007516524613	0.761126159857708
Merged-chr7-135631969-4	chr7	135631881	135632081	+	841.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316679, intron 1 of 19)	intron (NM_001316679, intron 1 of 19)	-19918.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	3.63459816951691	3.93411868120869	3.44915644116083	3.86545344219789	3.8969319729097	3.63126038183559	3.62136121772902	4.29497680409804	0.428597485847055	0.404527097383905	0.701621244783961
Merged-chr3-90254204-4	chr3	90254121	90254321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013901)	TTS (NM_013901)	363.0	NM_001357152	74343.0	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2	CREB regulated transcription coactivator 2	protein-coding	7.41652349321328	7.64915983101806	7.30548958530987	7.17276418410423	7.3077292920259	7.63331956049435	7.6668367673223	7.32157354055892	0.128672118062164	0.526469448691345	0.783742270408093
Merged-chr2-167864444-4	chr2	167864346	167864546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67881.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	6.75162584934391	6.79522016309217	6.7672860399465	6.65452567815025	6.78083336205016	6.83904034544241	6.85566445537608	6.96135464181494	0.171129242577926	0.378887378244007	0.681389119075475
Merged-chr10-96280422-3	chr10	96280323	96280523	+	794.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54216.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	4.39313260540671	4.33998260719724	4.31251022689971	4.38698804770318	4.07978134439064	4.10184288719566	3.90803912670029	4.26711746955569	-0.670614551461375	0.093965029110041	0.335322210319042
Merged-chr2-125782112-2	chr2	125782013	125782213	+	789.233337	f1_balb.idr|f1_c57bl6.idr	intron (NM_177608, intron 1 of 17)	intron (NM_177608, intron 1 of 17)	757.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	3.09758909100926	3.05515186271622	3.28367195566374	2.83334641249734	3.19072058531049	3.2781447837859	3.21208229344943	3.83468780264634	1.24219072454263	0.0354716095896296	0.186955475674213
Merged-chr11-60927445-4	chr11	60927331	60927531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027800, intron 1 of 1)	intron (NR_027800, intron 1 of 1)	4436.0	NR_027800	24082.0	Mm.46270	NM_025293	ENSMUSG00000042549	Map2k3os	F3-1|Gm16516|Gtlf3a	mitogen-activated protein kinase kinase 3, opposite strand	ncRNA	6.91835280926045	6.86903511018239	6.34608170661634	6.85413179116441	6.94437722242432	7.09552698360915	6.6920277380904	6.76546633035091	0.156463627912836	0.488273073240164	0.76118893988362
Merged-chr5-35701212-2	chr5	35701112	35701312	+	879.2000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359895, intron 14 of 17)	intron (NM_001359895, intron 14 of 17)	-21432.0	NM_030127	78558.0	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	2.99752210801508	2.96021542562367	3.12130194182229	2.78470270745295	3.27069085686782	3.17206716687181	3.22063755437506	3.17713297659722	1.03641509744645	0.0671399706070406	0.276403668638286
Merged-chr11-52003206-4	chr11	52003098	52003298	+	917.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1023.0	NM_001166657	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	4.04579967874388	3.92958447882868	4.04639891780655	3.79941203135842	4.40755519213153	4.12078821959792	3.87485738129899	4.49300812407741	0.785085797261773	0.0694076291766628	0.281788304141149
Merged-chr2-124625963-2	chr2	124625863	124626063	+	701.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	15667.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	2.6239785697101	2.53589820793919	2.62431232963339	2.41429242714823	2.71411187719954	2.59871018508809	2.34681653777993	2.49418703542555	0.0196663231577027	0.977607755592419	0.991939645680407
Merged-chr7-90214215-4	chr7	90214105	90214305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51227.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	6.44690860479382	5.81634694399122	6.41233508032261	6.23185748464485	6.8256428670831	6.64295899921618	7.20628340333857	6.79439419067427	0.927332378739392	0.00018110683130158	0.0033491824227631
Merged-chr19-47137368-4	chr19	47137274	47137474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133746, intron 1 of 2)	intron (NM_133746, intron 1 of 2)	920.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	6.16908476334061	6.29745741694578	6.41804071034866	6.64992651511876	6.26167052878788	6.52281832764028	6.48451171981253	6.43063402901695	0.0121976029805653	0.95843975713528	0.985180346775053
Merged-chr11-69981262-4	chr11	69981164	69981364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026017)	promoter-TSS (NM_026017)	-29.0	NM_018740	54351.0	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	5.3953639234076	5.75689774621066	5.23481896893811	4.96321811817751	5.81806689222894	5.81762849995027	5.71060423089421	5.50841693016477	0.623533965918581	0.0449130553182848	0.216589862093509
Merged-chr2-58907013-1	chr2	58906913	58907113	+	638.0	f0_balb.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	151829.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	3.58548975099049	3.04708995506746	3.13687425302957	3.38864629920795	3.73943533530963	3.3141024925628	3.3116043961678	3.32226211188483	0.463270035400478	0.419445949774602	0.712547571813996
Merged-chr7-102032690-3	chr7	102032594	102032794	+	927.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 4 of 8)	MTC|LTR|ERVL-MaLR	-14539.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	4.01468169224098	3.59641277258181	3.73351615102798	3.90488973431066	3.85977626413762	3.61969108915528	3.76949742079843	3.67784134387129	-0.248126348641179	0.597070541228753	0.825072362827406
Merged-chr4-9647172-3	chr4	9647074	9647274	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	-3457.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	4.40031303284529	4.68603825038558	4.69832756668211	4.91651191820378	4.64887235057727	4.57865532329669	4.91483110317021	4.53399660844937	-0.058162237529121	0.873967065631399	0.952753002076446
Merged-chr19-10297185-4	chr19	10297086	10297286	+	891.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	7691.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	4.83284990306254	5.25323497953582	4.86845577845316	4.96000386788666	4.2187236537632	4.77910345195573	4.13873187089554	4.68104849173941	-1.10717744288221	0.00457501844493797	0.044451037051801
Merged-chr4-150013770-8	chr4	150013592	150013792	+	985.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4669.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	4.49436514421213	4.53098176900992	4.58213047032754	4.24768528935068	4.81519470601734	4.75792550833304	5.09666842096581	4.91077908445199	0.958434064792031	0.00591302147955016	0.0536977489018756
Merged-chr12-99393106-4	chr12	99392999	99393199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 1 of 5)	CpG	56975.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	6.38305788314897	6.85932970171604	6.84684764694088	7.0203229809329	6.75237508718349	6.68979759647487	6.72968890057041	6.67073269481248	-0.142589192903366	0.521236422118302	0.781255988729258
Merged-chr10-98948229-4	chr10	98948117	98948317	+	892.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	33065.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	5.0828296450818	4.70250291704578	5.34817790849535	5.09436412127939	4.32401144425896	4.53034784245549	4.47383382015867	4.53692189048435	-1.30247689565403	0.000362846282754717	0.00592635051863194
Merged-chr7-30431964-4	chr7	30431856	30432056	+	807.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER91B|DNA|hAT-Tip100	8681.0	NM_172142	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	4.13175510680115	4.65576062063183	3.9818301659456	3.76467038156284	4.51324238442967	4.21025455929175	4.06650320746075	3.86896312308298	0.0413450358370916	0.932641407751117	0.975722604390767
Merged-chr8-64945937-3	chr8	64945860	64946060	+	739.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1225.0	NM_001163747	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	3.09450442762951	2.99474338211822	2.89879593807143	3.24003896735413	3.09542672708915	3.26498262883913	3.19841893182632	3.2634263384904	0.498219043537131	0.386357191489153	0.687552275421561
Merged-chr10-80967587-3	chr10	80967481	80967681	+	678.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	33784.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	3.21713674161468	3.40538059382929	3.74278853004158	3.27450369399907	4.20039810703594	3.59447984557269	3.62740860217662	3.47485724177051	1.07909309811547	0.049142471028162	0.229190928142677
Merged-chr9-66341731-2	chr9	66341631	66341831	+	975.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-8719.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	2.5325375126885	2.71160516593307	2.74144315509057	2.67875958840799	2.82326907067158	2.84770713643367	2.85320582941759	2.91976676745031	0.893664965038782	0.151512817097865	0.435197146949884
Merged-chr5-115359046-4	chr5	115358972	115359172	+	889.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10117.0	NM_007748	12861.0	Mm.43415	NM_007748	ENSMUSG00000041697	Cox6a1	VIaL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding	4.33838538140661	4.57266073839379	3.78381056938025	4.18529005165683	4.39139334417811	4.7936339754566	4.6713910687183	4.54557802829185	0.807242363279719	0.0557127965147922	0.247030532805481
Merged-chr12-52318657-3	chr12	52318540	52318740	+	939.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	161969.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	3.87982786207306	3.90995603422082	4.24434918335666	4.51039417795429	3.96956703329448	3.7699287511664	3.86474258750404	3.76868508365185	-0.889067294402713	0.0600076541527529	0.258505405491666
Merged-chr8-22861682-4	chr8	22861588	22861788	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 2 of 17)	intron (NM_001081149, intron 2 of 17)	2149.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	4.97499876294066	4.91843545147421	5.11774027973576	5.63238662949275	5.37776149383087	5.11547060519607	5.21953091670118	5.24184892057732	0.0465494064912932	0.891854205192431	0.95952862608333
Merged-chr10-20398407-4	chr10	20398294	20398494	+	943.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013875, exon 13 of 13)	3' UTR (NM_013875, exon 13 of 13)	50575.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	4.28963845934906	4.68846946133881	4.56109697201533	4.91638985416298	4.31167292463346	4.07737510157287	4.79474130166125	4.91085367333814	-0.168610297626272	0.697416221745882	0.877825471129288
Merged-chr13-23721002-4	chr13	23720892	23721092	+	885.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_1B-I_MM-int|LTR|ERVK	-10138.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	4.33388760940315	4.56592546774818	4.65185192732867	4.3820331317632	4.22608465523894	4.09926829743044	4.26999567650381	4.68322108241534	-0.345195783357859	0.388444486694064	0.688981838974675
Merged-chr6-86021113-2	chr6	86021013	86021213	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_012013)	TTS (NM_012013)	3922.0	NM_012013	26910.0	Mm.8024	NM_012013	ENSMUSG00000030001	Figla	FIGalpha|bHLHc8	folliculogenesis specific basic helix-loop-helix	protein-coding	2.99380938667245	3.91489865835972	3.1444074428766	3.3131016619111	3.50725011078806	3.74093799646449	3.65414282946695	3.46005251528355	0.645494184650825	0.29622369074693	0.608230141454905
Merged-chr1-194677981-1	chr1	194677881	194678081	+	1000.0	f0_balb.idr	intron (NM_008882, intron 3 of 31)	intron (NM_008882, intron 3 of 31)	58152.0	NM_008882	18845.0	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding	3.02885443302844	2.97313745352014	3.38902282192115	3.52246787474137	2.67624189393383	2.63805953648282	2.75958919461083	2.76627666023907	-2.68944028883508	0.000297317963994528	0.00503636253192921
Merged-chr4-120954545-2	chr4	120954456	120954656	+	927.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-2855.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	3.73128120101196	3.95945836657751	3.58438129338756	3.84045926303211	2.98180675953812	3.4095592795625	3.14828627002438	3.22603988875638	-2.24269855519739	0.000128753419095846	0.00251014506103073
Merged-chr5-143530886-2	chr5	143530786	143530986	+	774.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2855.0	NM_001347530	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	3.08004370837015	3.0952556429695	2.96787866212314	2.66575689797677	3.04256716566465	2.81465064339448	2.62846705860124	2.84312783751522	-0.497262118915043	0.455565706161505	0.739053500749152
Merged-chr11-68691795-4	chr11	68691697	68691897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175260)	promoter-TSS (NM_175260)	-118.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	7.4982785703407	7.33205165397438	7.0814932336738	7.32331932322484	7.28588762980478	7.19554485528114	7.48878644595866	7.07651855171058	-0.0615582952910142	0.753511777452649	0.902798885097597
Merged-chr19-55332834-3	chr19	55332725	55332925	+	800.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 3 of 8)	intron (NM_001360431, intron 3 of 8)	16768.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	4.09034410646632	4.14561688216652	3.89625025486862	4.23747418202367	4.35799524687706	4.01780487766519	3.82762937481293	3.53542166821829	-0.318287680695089	0.517011331743216	0.778629151390102
Merged-chr5-114127583-4	chr5	114127512	114127712	+	987.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001359940, exon 2 of 4)	exon (NM_001359940, exon 2 of 4)	606.0	NM_001359940	231642.0	Mm.332593	NM_175016	ENSMUSG00000044339	Alkbh2	9530023G02|AU016977|Abh2|mABH2	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase	protein-coding	4.59214540672015	4.43012632549203	4.42467254218805	4.88287995758482	4.60825187025738	4.8399776226231	3.99112463465153	4.66625468476754	-0.100806195790701	0.810787852254055	0.926854276252049
Merged-chr3-146345407-4	chr3	146345296	146345496	+	795.295837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33548.0	NR_033542	100038607.0	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	-	predicted gene 10636	ncRNA	4.11476633460863	4.29974657216459	4.21995373819684	4.90366838408047	4.22541349067071	4.62293817255049	4.42973872938004	4.77880133329643	0.179248690600971	0.688391772345385	0.87273863571837
Merged-chr12-32920434-4	chr12	32920333	32920533	+	734.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_044986, intron 5 of 5)	intron (NR_044986, intron 5 of 5)	33356.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	3.49001900697459	3.80065327620021	4.0931209561416	3.68520822004959	3.77751381929258	4.13448216249999	3.53980147905348	3.55090034853227	-0.0279354693564621	0.956366571683499	0.984660360711923
Merged-chr11-103382081-4	chr11	103382002	103382202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 5 of 11)	intron (NM_183034, intron 5 of 11)	-18410.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	7.45439163357119	7.33191286525053	7.49173826537008	7.36306187827511	6.91146443880375	7.17419995103959	7.15570528661509	7.16391077604637	-0.420896448250454	0.0221297666070764	0.137032045476367
Merged-chr6-125192153-4	chr6	125192062	125192262	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025595)	promoter-TSS (NM_025595)	-38.0	NM_025595	66493.0	Mm.138749	NM_025595	ENSMUSG00000030335	Mrpl51	2610511M02Rik|CDA09|HSPC241|Mrp64	mitochondrial ribosomal protein L51	protein-coding	5.20810234186355	5.32792407473188	4.79963336928905	5.32428494551302	5.54508889313687	5.17936465856377	5.15136158900402	5.4894891335539	0.302583599078474	0.341649923820673	0.650639445837748
Merged-chr10-80696674-3	chr10	80696560	80696760	+	847.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	LTR33A|LTR|ERVL	5160.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	3.36985886771319	2.98464025119043	3.13718508973752	3.35860955037273	3.25509226253061	3.48443287107053	3.30293133356488	3.25728967378383	0.349048747811984	0.528868716141577	0.785320670621494
Merged-chr2-85048441-2	chr2	85048341	85048541	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2019.0	NM_001081260	228140.0	Mm.23606	NM_001081260	ENSMUSG00000033955	Tnks1bp1	Tab182|mKIAA1741	tankyrase 1 binding protein 1	protein-coding	5.53797248135066	4.97781826527709	5.70905667484668	5.39536210717271	5.04895360382231	5.65942978684332	5.48474132344511	5.42644512939531	-0.0219651746540224	0.946205805929166	0.980814540550536
Merged-chr4-150486333-4	chr4	150486272	150486472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	165802.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	5.91816999760806	5.4357231545974	5.72851685301313	6.1739514550255	6.10501115288665	5.48852257521485	5.91076493882203	6.02090495613725	0.0836088303563827	0.780831664793881	0.914712020347981
Merged-chr3-131552791-3	chr3	131552646	131552846	+	860.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12022.0	NM_001289479	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	4.01512916555576	3.81315087716977	4.10624587189583	3.91417234630986	4.25866258921505	3.75581936492762	3.74272579969946	4.14652861771777	0.123700552355874	0.786358282309158	0.916920414680109
Merged-chr19-12591704-1	chr19	12591604	12591804	+	543.0	f1_c57bl6.idr	intron (NR_015503, intron 1 of 1)	intron (NR_015503, intron 1 of 1)	4862.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	3.08566168670873	3.18090185725729	3.2574724589757	2.99972223772663	3.08715484781502	3.25701354030046	2.94872295466154	3.1441091191823	-0.0617723918131432	0.913287897348927	0.967512811762258
Merged-chr2-170055689-3	chr2	170055587	170055787	+	933.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15091.0	NR_033634	100043910.0	Mm.468546	NR_033632	ENSMUSG00000097065	A630075F10Rik	4831414D02|Gm4722	RIKEN cDNA A630075F10 gene	ncRNA	3.70648612082882	3.89509263949869	3.9026997175288	3.84010630635423	3.46686623038823	3.77084772680625	3.63885722742478	3.65104125786605	-0.648089115207914	0.166635229576167	0.457960964592688
Merged-chr11-54522825-4	chr11	54522730	54522930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175258)	promoter-TSS (NM_175258)	-15.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	7.90896057618612	8.48908385209596	8.02390304027636	7.81320254688493	8.07432280757813	8.55935518551798	8.03207543125624	8.13507984582498	0.167537051128038	0.436372577878166	0.725104204892846
Merged-chr17-87447030-7	chr17	87446939	87447139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007589)	promoter-TSS (NM_007589)	-104.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	5.22502667080294	6.08181315873203	5.92520763238731	5.16111548984327	5.91425939087061	6.12063556243614	5.60748728842297	5.98388145318537	0.426830908319061	0.201092742743637	0.503319526783563
Merged-chr7-16924619-2	chr7	16924522	16924722	+	1000.0	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_007590)	promoter-TSS (NM_007590)	-590.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	6.70952710689114	6.8968904153164	6.61212270546255	6.81437577058556	7.08532979039463	7.30144621380959	7.6093249495844	7.09682112840471	0.715415062687679	0.000797591831502698	0.0112130730741715
Merged-chr17-46830148-4	chr17	46830033	46830233	+	905.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001100452, intron 1 of 10)	intron (NM_001100452, intron 1 of 10)	1280.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	4.47770192237969	4.64762515373773	4.39201957320411	4.73780165722835	4.61482801134052	4.47526586030176	4.07633197471308	4.5563561289118	-0.290334810293027	0.456933422490255	0.740243168159725
Merged-chr14-57746112-4	chr14	57745979	57746179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015771)	promoter-TSS (NM_015771)	44.0	NM_015771	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	6.22183019909075	6.3259283699843	6.45697949207133	6.21023750049829	6.49191377609685	6.3990760798649	6.21065780081622	6.25742149902976	0.0764553888970623	0.733284221772188	0.894443416491688
Merged-chr2-181541973-4	chr2	181541873	181542073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271585, intron 2 of 5)	intron (NM_001271585, intron 2 of 5)	21488.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	5.57559926187875	5.26854818969121	5.334989809145	5.49684364350104	5.14054639335579	5.25058001703663	5.08425518943905	5.44432133224341	-0.353315592677792	0.228717161279006	0.537520231999797
Merged-chr10-39732846-5	chr10	39732750	39732950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038037)	promoter-TSS (NR_038037)	690.0	NM_011264	19714.0	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	5.83258402613319	6.08534817745889	5.68527878808812	5.82119820986213	5.61606054819453	5.69530347537782	5.84945937800819	5.85255450137221	-0.185136247378096	0.473417296577241	0.7511674042147
Merged-chr4-33303223-1	chr4	33303123	33303323	+	663.5	f0_balb.idr	Intergenic	RMER1B|Other|Other	-7088.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	3.35710201682397	3.58871606835316	3.58870644909715	3.49186319006382	3.54503486080886	3.65057641229543	3.72218469235266	3.58669325172999	0.371188826846787	0.439273228905985	0.727189882655551
Merged-chr8-26835845-4	chr8	26835749	26835949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11426.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	6.35747761918073	5.85595064029558	6.79982644067208	6.52674964247515	6.09185104086961	6.14767498560353	6.36059140812824	6.12237743673024	-0.370097844108195	0.173967580892068	0.468213348974044
Merged-chr11-75459769-2	chr11	75459669	75459869	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1770.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	2.97246704002638	3.62259017082891	3.23438815505613	2.8791466229959	3.23222936040248	3.28727044141028	3.16210361352954	3.49968593171286	0.328852561724112	0.590532736755344	0.821031519445047
Merged-chr4-63408897-4	chr4	63408786	63408986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5441.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	5.35053890635378	6.02275782070228	5.50786147637667	5.26713369128749	5.8897890878388	5.89944817800147	6.05735723630513	5.72019445242454	0.545665190348039	0.0672340671684569	0.276659363335853
Merged-chr3-9666087-4	chr3	9665977	9666177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55992.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	5.12013625372351	5.09591164326038	5.42551347500538	5.30656681804886	5.20048149614762	5.33012715519225	5.42483588902744	5.30864346649756	0.119606060476531	0.682041029670043	0.869682098720609
Merged-chr16-33914256-4	chr16	33914093	33914293	+	867.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	52845.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	3.20679621149685	3.42551570544826	3.47999179113363	3.32264504588276	3.09746036490073	3.25575835125757	3.36408158399582	3.07837436755382	-0.601629666322803	0.272939280043918	0.584374944029057
Merged-chr3-37693645-3	chr3	37693519	37693719	+	766.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30741.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	3.80222355826024	3.51797386933278	3.60571546837958	3.74079431281959	3.26682736579847	3.3528796639558	3.83004330935954	3.60368108772676	-0.46229221537247	0.374993682803737	0.67807324835604
Merged-chr7-16296973-4	chr7	16296852	16297052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10157.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	6.44461262986602	6.75366410883593	6.17862299169964	6.07445095939491	7.27339019920725	7.36988574094446	7.11601879553373	6.9278190957045	1.13243098184729	2.29916783319943e-06	7.40844124940253e-05
Merged-chr19-8807032-4	chr19	8806939	8807139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4509.0	NM_001098237	75291.0	Mm.23423	NM_133759	ENSMUSG00000071661	Zbtb3	4930563M09Rik	zinc finger and BTB domain containing 3	protein-coding	5.80175092187381	5.77670690175041	5.85018539713319	5.96299861415174	5.81047348471102	5.74189930178228	5.95196365242452	5.86907158662419	-0.0234221306617276	0.924240725408901	0.971949015831349
Merged-chr13-19395848-4	chr13	19395742	19395942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024270)	promoter-TSS (NM_024270)	-29.0	NM_001347485	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	8.50905061452383	8.76888259494839	8.71859812590965	8.76504507139908	8.77756217175603	8.75196286779433	8.77316230606339	8.78747432856093	0.0929592214693505	0.524532537377592	0.78299900785164
Merged-chr11-103117310-7	chr11	103117185	103117385	+	977.710876	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_138753, exon 1 of 1)	exon (NM_138753, exon 1 of 1)	960.0	NM_138753	192231.0	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	4.29387063045706	4.19858488469107	4.3385581845594	4.41246095993067	4.19193596407473	4.50910049823801	4.27564110474897	4.4591572173361	0.0892320319436394	0.816709285153068	0.929511044081646
Merged-chr2-80298547-2	chr2	80298447	80298647	+	737.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	6077.0	NM_177256	320769.0	Mm.60992	NM_177256	ENSMUSG00000050114	Prdx6b	1-cysPrx-P1|4930414C22Rik|Aop2-rs1|Prdx5-rs1|Prdx6-ps1|Prdx6-rs1|Prdx6-rs1-ps	peroxiredoxin 6B	protein-coding	3.19424103056133	3.1436630970829	3.19462479456936	3.48377446499471	3.33610159862508	3.24231054668561	3.24127860796323	3.25154790251088	-0.0195004512156317	0.971719565021068	0.989737326894157
Merged-chr13-42574354-4	chr13	42574257	42574457	+	972.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106442.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	5.63024249205163	5.64771751991184	5.00989485022698	5.51034015191015	5.60885601754115	5.4875250178603	6.0342223004376	5.98564373742598	0.535270479781693	0.0799379327690263	0.306228794911693
Merged-chr3-37729342-4	chr3	37729263	37729463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5003.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	6.7452062395835	5.95078422250242	6.91852752863415	7.31376524384241	6.34692389787045	6.38554612063967	6.90770949878957	6.55866048639077	-0.373860482249835	0.230775352456567	0.540269662297921
Merged-chr8-111940642-4	chr8	111940547	111940747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026693)	promoter-TSS (NM_026693)	-56.0	NM_026693	93739.0	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	7.2502003032087	7.04395768079852	6.96074169329645	7.18572511445466	7.30574647416362	7.4708547153176	7.56111479912138	7.39880745889577	0.423987196087483	0.0221533035927962	0.137129315282341
Merged-chr2-173018165-3	chr2	173018137	173018337	+	929.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3665.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	4.15322076838417	4.01310934205046	4.0249947620587	3.87904697119891	3.8730940097578	3.8390826561219	3.64814989283541	3.87919251734905	-0.557558475361841	0.210155482717963	0.514589641224702
Merged-chr2-167744129-4	chr2	167744023	167744223	+	990.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52946.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	5.75352314268888	6.58781086111241	6.40383766037043	5.2571556955373	6.33436157932165	6.44511354396721	5.6436727318885	5.45492237639342	-0.1162221765441	0.840724517664863	0.939404264275333
Merged-chr8-35645582-4	chr8	35645482	35645682	+	995.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-56562.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	5.12807510265857	4.80074267546697	5.44821559965945	5.83267801619676	4.82973876694547	5.01384631065586	5.16754887193914	5.02247599215574	-0.683872915235306	0.0636972053732883	0.268072097278146
Merged-chr1-37505391-1	chr1	37505291	37505491	+	580.0	f0_balb.idr	intron (NM_173870, intron 2 of 15)	intron (NM_173870, intron 2 of 15)	-16786.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	3.04247297794656	2.88406517338295	3.2592674574114	3.01917766380735	2.692186641481	2.81611690704451	3.14253278509712	3.04125415117343	-0.524986606043283	0.405592371016779	0.702341680428793
Merged-chr11-63914518-4	chr11	63914418	63914618	+	938.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018805, intron 1 of 1)	intron (NM_018805, intron 1 of 1)	7766.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	4.56332694069906	4.54100198375812	4.52305389068905	4.64611952100082	4.55988994603905	4.73575056538006	4.54309302385286	4.47789462810972	0.00853650346816154	0.980589139832295	0.99281244474172
Merged-chr10-80173734-3	chr10	80173634	80173834	+	898.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152857)	TTS (NR_152857)	790.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	4.09915623321337	4.04244527249979	3.80728201235621	4.01744906852231	4.35914566464856	3.81180664841626	3.79247194331286	3.74943616237278	-0.0699650140089541	0.882566707376758	0.95575354370667
Merged-chr17-42832468-2	chr17	42832382	42832582	+	980.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009847, intron 5 of 17)	intron (NM_009847, intron 5 of 17)	43942.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	3.73917484986335	3.25388333038552	3.48443124404502	3.17517993758945	3.6849114447693	3.81294749588712	3.52520449866814	3.30166711512243	0.56791373772981	0.294772373134309	0.606879813945882
Merged-chr7-140957021-2	chr7	140956921	140957121	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-1060.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	3.35618019122458	3.37424141056797	3.56109268343756	3.24168818068767	3.51259223102999	3.08163417548281	3.10380587182436	3.3548071739603	-0.34816476494735	0.53662825785009	0.79055929227402
Merged-chr4-148160617-1	chr4	148160517	148160717	+	1000.0	f0_c57.idr	promoter-TSS (NM_176848)	promoter-TSS (NM_176848)	-51.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	4.42037177556368	4.15350871270074	4.33027031033766	4.14374734558677	4.50801448076282	4.50735275970929	4.89693209335379	4.82680809770018	0.994593771458174	0.00788638087470449	0.0665258004598946
Merged-chr8-26015537-4	chr8	26015327	26015527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008033, exon 1 of 9)	exon (NM_008033, exon 1 of 9)	174.0	NM_008033	14272.0	Mm.3496	NM_008033	ENSMUSG00000015994	Fnta	FTA	farnesyltransferase, CAAX box, alpha	protein-coding	5.56556245196623	5.32876591656737	5.66238296076801	5.20241240446507	5.30757084276693	5.22934052173056	5.262720086963	5.28519058748874	-0.289299952977375	0.329823040578611	0.641176589366592
Merged-chr7-16002394-4	chr7	16002315	16002515	+	984.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-2920.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	5.72888969769175	5.1007280293318	5.96264639589062	6.66396330310555	4.86464494745811	4.77211756015513	5.01441941513299	5.38126525944341	-1.67334100256504	3.86494561282661e-05	0.000903819533771941
Merged-chr19-37698904-3	chr19	37698801	37699001	+	703.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007811, exon 3 of 7)	exon (NM_007811, exon 3 of 7)	1093.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	3.42981748112494	3.86057936061187	3.37482571421059	3.25999664380128	2.93735265615584	3.23941341798241	3.24451515123283	3.42833055414237	-1.01314287355829	0.0869610061120379	0.321649459848867
Merged-chr10-121626511-4	chr10	121626395	121626595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081056)	promoter-TSS (NM_001081056)	-163.0	NM_001359618	73192.0	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	8.44468082431774	8.23079369121929	8.06511330874427	8.58010619450789	8.51263837137099	8.59835436464801	8.38651592387099	8.40989356620429	0.159924592687812	0.363723719288944	0.668719891909279
Merged-chr10-40300890-4	chr10	40300786	40300986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009665, intron 1 of 7)	CpG	1300.0	NM_007444	100041585.0	Mm.476925	NM_007444	ENSMUSG00000063953	Amd2	AdoMetDC|Amd1|Amd3	S-adenosylmethionine decarboxylase 2	protein-coding	6.03611659626356	6.20322332017548	6.39639285673629	6.6810293815949	6.11992932990557	6.16911040267836	6.78475206927253	6.33863038571584	0.0170098339349475	0.950619322604096	0.982312550074733
Merged-chr4-9073972-4	chr4	9073858	9074058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-195335.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	5.19336241547807	5.52829965824643	5.9942205251891	5.86857724348975	5.41533095680318	5.7520343891287	5.90306786966625	5.72733292620087	0.0228088343776878	0.941009666909574	0.978676631829834
Merged-chr9-114329954-4	chr9	114329838	114330038	+	786.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007535)	promoter-TSS (NM_007535)	-197.0	NM_007535	12046.0	Mm.378887	NM_007535	ENSMUSG00000053820	Bcl2a1c	A1-c	B cell leukemia/lymphoma 2 related protein A1c	protein-coding	4.48717102057639	4.84342970131588	5.05774923372376	4.58241870804993	4.03043033775498	4.3345303451537	4.33480923241965	4.44195931112607	-1.07856058525371	0.00700217985747057	0.0609077551111937
Merged-chr19-46395234-4	chr19	46395130	46395330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016860, intron 1 of 10)	CpG	505.0	NM_016860	54130.0	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	8.04972710225196	8.02245986318154	7.62678165057362	7.93066000912531	8.02355299326139	7.90815371762164	8.12292385610566	7.76612764679019	0.057386146459335	0.75080338568232	0.901855648088396
Merged-chr8-25053002-4	chr8	25052891	25053091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 9 of 11)	L1_Rod|LINE|L1	-14029.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	7.24392562597297	7.2295501679813	7.46207716862545	7.73948830123848	6.34479063096178	6.36002152027804	6.61635615367307	6.8438816985581	-1.24037245301725	6.99792717062454e-08	3.09574554430009e-06
Merged-chr6-97866787-4	chr6	97866688	97866888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	59730.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	6.99275740909023	7.06543356224283	7.05240422321727	7.02331633875132	6.55591528836153	6.62655668026539	6.70873215467495	6.13169646951011	-0.721892396484818	0.000774418272846621	0.0109587113803081
Merged-chr4-108328275-4	chr4	108328168	108328368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027250, exon 1 of 3)	exon (NM_027250, exon 1 of 3)	116.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	7.26267145306433	7.46828194105692	7.63507786238817	7.14700454515603	7.05809524008419	7.55436341311149	7.07920392035466	7.34239374860913	-0.156453617723649	0.46586183992446	0.746232331982698
Merged-chr18-34378188-4	chr18	34378084	34378284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	-4769.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	5.80184131257678	5.18061103630603	5.77961421310177	5.95953656866816	5.5282465027349	5.6086158119547	5.46341570019587	6.06690389284829	-0.0557843523297778	0.85990894136421	0.947071700254788
Merged-chr6-85137555-5	chr6	85137458	85137658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011467, exon 1 of 3)	exon (NM_011467, exon 1 of 3)	206.0	NM_011467	20751.0	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|Gm10328	sepiapterin reductase	protein-coding	5.31914030230402	5.1537763577429	5.34965073438459	4.81621850138601	5.02033573249333	5.43458909273818	5.32271596919546	5.92082857048441	0.536508681802222	0.122883115732478	0.388569404474548
Merged-chr6-121245849-4	chr6	121245749	121245949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011909)	promoter-TSS (NM_011909)	-57.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	7.38131816012042	7.25251285808531	7.14454088613231	7.44316775561529	7.50762636290274	7.2979189411712	7.42211605343213	7.25330639537757	0.0822912295880833	0.657239875738444	0.857136941226236
Merged-chr5-44050381-4	chr5	44050266	44050466	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163578, intron 3 of 22)	intron (NM_001163578, intron 3 of 22)	44402.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	5.17071254693837	5.03350392365358	5.30543962180064	5.64891852717867	5.71916645717931	5.73668828568892	5.56091766086338	5.5066952508723	0.518380164514277	0.090894526597087	0.329418610420267
Merged-chr3-96001219-4	chr3	96001115	96001315	+	980.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013841, intron 14 of 14)	intron (NM_013841, intron 14 of 14)	-5376.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	5.40292106081368	5.05346444532123	4.8846748474562	5.05096308451068	4.92388024217534	5.13226128828121	4.86155178175906	4.84317418988919	-0.320194051659978	0.325229789248706	0.636798370669097
Merged-chr2-27765101-4	chr2	27765019	27765219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54536.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	6.59647334164654	7.03823310089268	6.66261980787996	6.68144383465615	6.94483868556261	7.06981311381392	6.84540450622212	6.98988002904576	0.28941512920921	0.163600536266529	0.453373353678186
Merged-chr4-105164237-4	chr4	105164138	105164338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 1 of 5)	intron (NM_080555, intron 1 of 5)	6891.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	6.63177936144387	6.15868715185849	6.5684633691418	6.99809086128082	6.95427273135779	6.79393382986626	6.86578293411412	6.68952052591985	0.272522498480698	0.272631540760327	0.584085012032846
Merged-chr15-68260190-4	chr15	68260087	68260287	+	961.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1331.0	NM_198644	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	4.02871517794643	4.32392667995767	4.02926962692627	4.61315297160433	4.33529707125885	4.15417643670444	4.21256847023345	4.75507968239508	0.226316328277171	0.61211406707293	0.832680684364583
Merged-chr4-59444204-1	chr4	59444104	59444304	+	620.0	f0_balb.idr	Intergenic	ID4|SINE|ID	-5571.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	2.96773845690322	2.91486674100928	3.02488403497982	2.90479574933201	2.92142235084921	2.81700848518355	2.63355813831691	2.96656020855326	-0.479957241866531	0.441094741829435	0.728385282984091
Merged-chr10-112990927-4	chr10	112990820	112991020	+	990.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61894.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	6.01649464340035	5.2871878501428	6.34442961271422	6.32106570326171	5.50138778773462	5.60099174689965	6.02719262794036	5.92741667461726	-0.448993364547419	0.173205569970697	0.467204762200403
Merged-chr13-56134972-4	chr13	56134867	56135067	+	906.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159513, intron 1 of 8)	CpG	583.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	3.96537474503588	4.30222242315053	4.41439245951344	4.38773845976658	4.35875318212388	4.45614063500543	4.39421035066966	4.83628321152782	0.543613848379584	0.176182779157915	0.471199896208057
Merged-chr18-79981132-3	chr18	79981031	79981231	+	990.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65764.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	4.38806117049536	4.03716420827643	4.85912254689943	4.81022893354258	3.25886117796854	3.62755560541515	3.48935907927584	3.57069428717596	-3.39431095762312	5.80547840832494e-09	3.23592911218607e-07
Merged-chr19-46057172-4	chr19	46057049	46057249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346801, intron 1 of 13)	CpG	610.0	NM_001081214	226169.0	Mm.2415	NM_145504	ENSMUSG00000055491	Pprc1	A930018M19|BC013720|PRC|mKIAA0595	peroxisome proliferative activated receptor, gamma, coactivator-related 1	protein-coding	6.13385958824498	6.05181303965545	5.91820176982676	5.94161129119851	6.11344611802287	6.18524396202257	5.86438345525865	6.42988397202161	0.236727709492191	0.337150771241204	0.646963199546119
Merged-chr9-106171649-2	chr9	106171541	106171741	+	823.5	f0_balb.idr|f1_balb.idr	intron (NM_029896, intron 1 of 8)	intron (NM_029896, intron 1 of 8)	712.0	NM_029896	77305.0	Mm.265125	NM_029896	ENSMUSG00000020257	Wdr82	9430077D24Rik|CDW5/WDR82	WD repeat domain containing 82	protein-coding	3.53129948924292	3.86706969298616	3.74368739379379	3.55335787122989	3.79974165010632	3.32005916319155	3.57421078669038	3.74146505133209	-0.148885580051204	0.768451875504254	0.909356419531329
Merged-chr9-21235518-4	chr9	21235420	21235620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110307, intron 2 of 5)	intron (NM_001110307, intron 2 of 5)	3812.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	6.05212836550778	6.09917586037432	5.9877604496863	5.90848101086811	6.50359076794251	6.18578583084024	6.02226327440594	5.89071157264794	0.275210669963304	0.281227595165866	0.59334817221824
Merged-chr6-47889026-4	chr6	47888931	47889131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146175, intron 2 of 7)	intron (NM_146175, intron 2 of 7)	11476.0	NM_146175	101095.0	Mm.440186	NM_146175	ENSMUSG00000025821	Zfp282	AI449432|C81429|E430019K09Rik|HUB1	zinc finger protein 282	protein-coding	5.02662429817344	4.95678229521548	5.16289017697905	5.83127515484481	5.34793935557315	4.59158348781221	5.03806656813068	5.31039019266358	-0.371720811389586	0.344976062194221	0.653357561969643
Merged-chr18-24467114-4	chr18	24467059	24467259	+	826.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3712.0	NM_026529	68046.0	Mm.276574	NM_026529	ENSMUSG00000024273	2700062C07Rik	AI195775|C87515	RIKEN cDNA 2700062C07 gene	protein-coding	3.57192259411859	3.19189796541391	3.0314738902333	3.70095766978465	3.34722952722712	3.47279692200777	3.2877905938922	3.61842038836198	0.0803763553652208	0.891119822338389	0.959258016639054
Merged-chr6-134245855-4	chr6	134245734	134245934	+	902.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 5 of 8)	L1MEf|LINE|L1	-150495.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	4.83847656361075	4.49154683821664	4.99841142035681	4.94399813076208	4.7209128451349	4.47855567950757	4.37812487863062	4.48680817214425	-0.651616731777836	0.0786081850220851	0.303331454065217
Merged-chr4-147868657-4	chr4	147868544	147868744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010244)	promoter-TSS (NM_010244)	75.0	NM_001025365	28010.0	Mm.250504	NM_133873	ENSMUSG00000029022	Miip	AA553001|AI853621|D4Wsu114e|IIP45	migration and invasion inhibitory protein	protein-coding	9.32012488962049	9.26812981017948	9.41796839221797	9.29557117419997	9.34390744098303	9.49666286188871	9.4419968496905	9.28691799083	0.0842234830892425	0.539110139641987	0.791983989773924
Merged-chr2-173534721-4	chr2	173534573	173534773	+	954.255981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12081.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	3.928200469982	3.99558367151747	3.81986984653995	4.29140362072176	4.10748601937508	4.05032164884838	4.23094730522	4.07423583439384	0.196682133972305	0.652129249788809	0.854401190375453
Merged-chr2-17946295-4	chr2	17946183	17946383	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50675.0	NM_026627	68231.0	Mm.23887	NM_026627	ENSMUSG00000062651	H2al2a	1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1	H2A histone family member L2A	protein-coding	5.42629024714724	5.33150505776223	5.84980715266908	5.83477875506252	5.78705149498803	5.1959697577478	5.59025146457585	5.19838742098683	-0.268068128858351	0.401856087763176	0.699391522101205
Merged-chr6-86405231-3	chr6	86405124	86405324	+	782.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164078, intron 1 of 11)	intron (NM_001164078, intron 1 of 11)	1005.0	NM_001164078	21841.0	Mm.333219	NM_011585	ENSMUSG00000071337	Tia1	2310050N03Rik|AI256674|TIA-1|mTIA-1	cytotoxic granule-associated RNA binding protein 1	protein-coding	3.80834060906173	3.24640036888517	3.36402198507596	3.34286815839748	3.10580761132633	3.64833913219124	3.35125928145463	3.41992586769902	-0.217314782384691	0.698751706168312	0.878505428649175
Merged-chr3-116423619-4	chr3	116423510	116423710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001080818, exon 1 of 16)	5' UTR (NM_001080818, exon 1 of 16)	422.0	NM_001080818	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	6.2649519358206	7.19755984654117	6.56537973427059	5.83368035954255	6.63564276903428	6.59277469258521	6.34713198916248	6.15826567919827	-0.164996520417466	0.611093591410872	0.832179032172634
Merged-chr5-121389122-4	chr5	121389013	121389213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3498.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	7.50392281444068	7.74465337184503	7.64673270596258	7.42829541165796	7.6316174707368	7.44665885260236	7.46818631202936	7.83474181801873	0.0331666613235813	0.859338567396185	0.946751127151883
Merged-chr2-132903708-1	chr2	132903608	132903808	+	692.0	f0_balb.idr	TTS (NM_198029)	TTS (NM_198029)	-22846.0	NM_177303	320974.0	Mm.357342	NM_177303	ENSMUSG00000043110	Lrrn4	B430119L13Rik|Nlrr4	leucine rich repeat neuronal 4	protein-coding	2.96351344844419	2.81023040205879	3.12674339439813	3.10949460086175	2.81777944679473	2.73963645118648	2.70109734348219	2.84108493452923	-1.07625979068254	0.0918336248023124	0.331421466298423
Merged-chr2-167463171-2	chr2	167463071	167463271	+	743.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304542, intron 9 of 15)	intron (NM_001304542, intron 9 of 15)	-29474.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	3.26786391882822	3.60429445175704	3.2682689523884	3.01972065372572	3.61578956095607	3.18154898943564	3.25655064070924	3.68296116157248	0.527180261447862	0.359538272521668	0.665421323593206
Merged-chr7-45081275-3	chr7	45081148	45081348	+	946.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	10965.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	3.88163639737783	3.68690685567725	4.18402557353316	4.09875951572519	4.0179568640873	3.53481369417497	3.65706609436146	3.66888867506061	-0.671633493269078	0.175299399817377	0.469985158748016
Merged-chr16-31663970-7	chr16	31663886	31664086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252434)	promoter-TSS (NM_001252434)	51.0	NM_001252434	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	5.97549915130507	6.08277953151033	6.27219557013046	5.34476544484076	5.16323369779541	5.46849295710923	5.26134032550987	5.0242562699122	-1.22456673310279	0.000244665211183107	0.00428624786286054
Merged-chr7-144932947-3	chr7	144932861	144933061	+	833.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007631, intron 4 of 4)	intron (NM_007631, intron 4 of 4)	6964.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	4.30427598359051	4.46776602048982	4.21374101448738	3.86355886348227	4.70005784659857	3.89337631800371	4.14763988892575	4.6466028140989	0.410856009461857	0.375163219246108	0.678207517212341
Merged-chr8-61224453-2	chr8	61224353	61224553	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021506, intron 1 of 11)	CpG	282.0	NM_021506	59009.0	Mm.27949	NM_021506	ENSMUSG00000031642	Sh3rf1	2200003J05Rik|Posh|R75531|Sh3md2	SH3 domain containing ring finger 1	protein-coding	4.2964385526891	3.91101504151377	4.55657596586261	4.48313773480738	3.73032623749155	4.19805059724418	3.954016724875	3.91396485518707	-1.00771979270139	0.0265815390430815	0.154705426618765
Merged-chr3-8756619-2	chr3	8756519	8756719	+	956.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89581.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	3.23285182911661	3.12274025216349	3.23326783361787	3.3096620622173	3.10198025902982	3.22191382679681	3.16269756801691	3.4924864476825	0.071187782562637	0.89690255936826	0.961411792739385
Merged-chr4-88438915-4	chr4	88438782	88438982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025760)	promoter-TSS (NM_025760)	44.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	5.24043011365605	4.87154840847669	5.90660595041132	5.51774132507594	5.21114190933025	5.60436597797397	5.70722868243519	5.6624183432533	0.200237149575457	0.562170708329565	0.805449856042474
Merged-chr11-113747367-4	chr11	113747277	113747477	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163346, intron 1 of 1)	intron (NM_001163346, intron 1 of 1)	3783.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	4.82434527222552	5.12030853237663	5.07907820386749	4.79599471705294	5.20711442470771	4.83539832741651	5.26405086290362	5.31438093734071	0.419479619452837	0.192609640744538	0.492306866509462
Merged-chr2-84956533-4	chr2	84956452	84956652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021398, intron 12 of 12)	intron (NM_021398, intron 12 of 12)	19906.0	NM_021398	58207.0	Mm.290729	NM_021398	ENSMUSG00000027074	Slc43a3	Eeg1|SEEEG-1	solute carrier family 43, member 3	protein-coding	7.06180580149952	7.00570052155436	7.16049878522039	7.66855490714436	7.31056829813196	7.03590525300957	7.76749068913958	7.47441863419528	0.212127572912002	0.386104287968984	0.687471231171812
Merged-chr8-60883665-4	chr8	60883565	60883765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16|LTR|ERVK	-6728.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	6.13405241625142	5.78548102716438	6.4004601868713	6.59974378807163	5.47593778785596	5.92487249972646	5.84333087879685	6.04940022341265	-0.697047997495847	0.0176439764346313	0.11755879421891
Merged-chr11-32324766-4	chr11	32324626	32324826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23085.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	5.37068625410333	5.09754278958856	5.34240184020416	5.45342445385029	5.32993955445337	5.22227570391242	5.454533716968	5.45155575504146	0.0651667712186836	0.821513306684295	0.931717929460157
Merged-chr5-67297610-4	chr5	67297520	67297720	+	870.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9335.0	NM_178651	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	4.14355109634054	3.89443105541885	3.89790138526015	4.26064100330689	3.92888732810581	4.22228437306647	4.03381922491693	4.38345062021158	0.200191446646289	0.647865950620663	0.85185825899816
Merged-chr18-8678021-4	chr18	8677918	8678118	+	927.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-534838.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	4.20888405097633	4.82483424752815	4.45841374936286	4.07667366715335	5.21618490007338	4.44643232903853	4.82390073936022	4.87762910640741	0.979924185484273	0.0181465805528567	0.119919734209617
Merged-chr3-96227582-4	chr3	96227481	96227681	+	975.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18D_MM|LTR|ERVK	6509.0	NM_178214	319190.0	Mm.439791	NM_178214	ENSMUSG00000068854	Hist2h2be	AV127319|H2b-613|T25626	histone cluster 2, H2be	protein-coding	4.51072773487662	4.49075849218459	4.19008103208292	4.42110366877554	4.55194411749028	4.60086005519083	4.27180217804888	4.82920556159612	0.374522178111204	0.323418186566639	0.634840414252573
Merged-chr12-100249349-1	chr12	100249249	100249449	+	541.0	f1_balb.idr	Intergenic	Intergenic	-27260.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	3.72875523078142	3.44520734125427	3.51637200251496	3.87160860073008	3.32403300384874	3.74489826878661	3.76092407758614	3.57103828979221	-0.176182913733137	0.732482296659138	0.893963778565797
Merged-chr15-12321438-4	chr15	12321328	12321528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025673)	promoter-TSS (NM_025673)	-68.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	7.48277717300872	7.77321306281117	7.40331429022591	7.78228961551371	7.83396301126708	7.76471292079106	7.97864666523475	7.84112015903251	0.293162390694864	0.105917290926526	0.358526100953929
Merged-chr13-113610347-3	chr13	113610233	113610433	+	726.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	MTEa|LTR|ERVL-MaLR	8231.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	3.71501742026028	3.94165483700123	3.55780278120439	3.39363133881453	3.62234043083337	3.83540110873388	3.48746536660429	3.24288445964329	-0.311257088759543	0.560917068958865	0.80477863463177
Merged-chr7-65373518-3	chr7	65373427	65373627	+	893.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2283.0	NM_009386	21872.0	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	3.30366458006367	3.74203311621978	3.57837950028274	3.51135642247722	3.02962783665635	3.2882175827651	3.35117367394789	3.47358327208793	-0.902030683652472	0.103799295607591	0.354131000344493
Merged-chr5-104986878-4	chr5	104986762	104986962	+	876.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4145.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	4.47963312173488	4.78430432248131	4.43753485591329	4.38055216107415	4.17320926830771	4.32774922612443	4.78809750319755	4.63544274068806	-0.0634178020632699	0.874032408819777	0.95278045864039
Merged-chr2-155019908-2	chr2	155019808	155020008	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015770, intron 1 of 3)	ERVB4_1-I_MM-int|LTR|ERVK	6338.0	NM_015770	50518.0	Mm.315593	NM_015770	ENSMUSG00000027596	a	A<y>|ASIP|ASP|As	nonagouti	protein-coding	3.23729486805621	3.07218454339194	3.23773216567212	3.11523370692413	3.08751044630827	3.34930261637666	3.04936661876406	3.17927176198189	0.0176499987224805	0.974539455146112	0.990926408960312
Merged-chr7-16207700-4	chr7	16207614	16207814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027883, intron 7 of 16)	intron (NM_027883, intron 7 of 16)	14279.0	NM_001285931	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	6.33556401771835	6.3716805218979	6.31491653197644	6.19835391715747	8.03266436363666	7.80507248496326	7.94718500217644	7.66783416110747	2.15456159330139	1.64135225409466e-29	1.98016630668142e-26
Merged-chr9-96669988-4	chr9	96669884	96670084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38481.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	7.15994450130671	7.31724908854904	7.1158790324091	7.03125059941602	6.96663532118444	7.02383994562162	7.06856956893286	6.84242614906145	-0.245449708395816	0.200371188667465	0.502485838102051
Merged-chr2-102989972-3	chr2	102989842	102990042	+	885.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83571.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	2.9421497086095	2.78286809569288	3.05054687823363	2.73093301341878	2.62864476918103	2.73015869399553	2.61744557250518	2.82308132117637	-0.850449622652683	0.19417904083174	0.494609868894025
Merged-chr11-54730094-2	chr11	54729993	54730193	+	678.25	f0_balb.idr|f0_c57.idr	intron (NM_178626, intron 3 of 5)	ID|SINE|ID	57610.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	3.67017413257456	4.02285938342766	3.83944127002466	3.78566726923645	4.19618727001217	3.84899022561333	3.8239608181642	4.24072254415514	0.582736328964261	0.194625391191378	0.495094554147854
Merged-chr5-77309415-4	chr5	77309144	77309344	+	868.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019836, exon 1 of 7)	exon (NM_019836, exon 1 of 7)	842.0	NM_019836	56412.0	Mm.129136	NM_019836	ENSMUSG00000036285	Noa1	2610024G14Rik|AU022345|AtNOS1|mAtNOS1	nitric oxide associated 1	protein-coding	3.05908372214759	2.95937600152578	3.17663728049852	2.92002420677927	3.06243728478173	3.16984486486118	3.16408485164917	3.17488170938362	0.47554808372627	0.395615583101955	0.694542264937206
Merged-chr13-58117841-4	chr13	58117749	58117949	+	903.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4202.0	NM_001362415	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	4.14191923225946	4.34530298870118	4.19342001113478	4.47478081535152	4.69992274072953	4.46349712007726	4.3597093547941	4.53863983129902	0.49806942363897	0.197415019337555	0.498787070539606
Merged-chr16-36639984-4	chr16	36639900	36640100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	26077.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	6.84215691393946	7.04971966098564	7.30360875224851	7.10891472005131	7.04163171732235	6.91629895881122	7.2376946457162	6.92102723189784	-0.0689273537444724	0.734398462568669	0.895037123607549
Merged-chr14-30635400-4	chr14	30635307	30635507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9199.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	5.82817668521142	6.42098708972532	5.92813500135103	5.27704303630534	6.426025509737	6.60653639726173	6.22895206567474	6.16182177925429	0.686931358554008	0.0276012281950857	0.15849784487749
Merged-chr7-80075051-4	chr7	80075104	80075304	+	996.357178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045695)	promoter-TSS (NR_045695)	53.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	4.52441791495043	5.14159681559113	4.61480152991574	4.45788931001204	4.84768753513598	5.22252758241674	4.67680450198385	5.0484731296055	0.507936669998916	0.17810239076234	0.473852334381104
Merged-chr13-37345336-4	chr13	37345269	37345469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010745)	promoter-TSS (NM_010745)	24.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	6.04229308174018	6.2477219057366	5.97788790644098	5.7184091157012	6.12355381359534	6.23954711792614	6.07435048310939	6.01761261362856	0.186490660178107	0.459088450361159	0.74170765693035
Merged-chr18-65600077-4	chr18	65599978	65600178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361051, intron 1 of 8)	intron (NM_001361051, intron 1 of 8)	-6605.0	NM_001361052	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	6.21323655947696	6.67060969902926	6.82785848146927	7.07981247410878	6.26317909129382	6.5333818755971	6.66962971137672	6.52875590139735	-0.358911505675891	0.16311876500788	0.452706698401916
Merged-chr3-122246206-2	chr3	122246103	122246303	+	980.166626	f0_balb.idr|f0_c57.idr	intron (NM_008129, intron 1 of 6)	CpG	646.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	4.89458034866917	4.7127107133186	4.74484547108001	5.10817551359928	4.77781407563051	4.91940354963363	5.03676445187269	4.99440663473795	0.0737768047611088	0.826334580132531	0.93341395042234
Merged-chr17-15830308-4	chr17	15830223	15830423	+	956.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3737.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	4.31498083647713	4.01628601912661	4.39694979112933	4.35073036134806	4.20362979094666	3.99061582460166	4.37648789512129	4.18047397028979	-0.205400001319642	0.614137561508604	0.833658125917707
Merged-chr10-127742089-3	chr10	127742004	127742204	+	954.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198035, exon 2 of 2)	exon (NM_198035, exon 2 of 2)	2566.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	4.48665359583377	3.90629027647207	4.03178790877537	4.22791356772317	3.85063392197856	3.51472276896859	3.5247129945177	3.83189189264453	-1.36971127273741	0.00572808321910323	0.0525343686963728
Merged-chr4-129855318-7	chr4	129855211	129855411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34603.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	5.26046505455458	5.01980969111481	5.23129387371468	5.26308558568048	4.89778712105236	5.37360271358378	4.97420065179199	5.3437512185894	-0.0865434935699151	0.784193928678333	0.915967437099313
Merged-chr10-75883373-4	chr10	75883283	75883483	+	830.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10015.0	NR_152573	70377.0	Mm.275878	NM_024440	ENSMUSG00000009092	Derl3	1810006I20Rik|1810063P04Rik|IZP6|derlin-3	Der1-like domain family, member 3	protein-coding	3.75650994600563	4.12892851285541	3.51705499676981	3.85856106451136	4.10879432255609	3.81970393384811	3.8465158265422	4.04790574751792	0.354178915218174	0.450791521970732	0.735516097245953
Merged-chr9-107724945-4	chr9	107724828	107725028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14453.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	6.96079705413962	6.86737643913649	6.97518893177661	7.09050260654825	7.24337614249227	7.27672358323445	7.46511446890223	7.18633734252291	0.426600718418798	0.0235090832136692	0.142348129630491
Merged-chr3-87509327-4	chr3	87509233	87509433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16245.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	5.96200130653664	6.5969181234625	6.37632846254961	5.73775759419463	6.54443599703173	6.16352652875832	6.08492606489034	5.64434213613643	-0.0749334981891599	0.813157820704341	0.927817858500442
Merged-chr12-85598244-4	chr12	85598131	85598331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205052)	promoter-TSS (NM_001205052)	-874.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	7.04757145548889	7.00468244199334	6.85620246455571	7.19237269630813	7.13975117634742	6.68550275721253	6.84877980988473	6.86513833983342	-0.185131712672111	0.376326174608596	0.679136980438752
Merged-chr7-102248735-4	chr7	102248630	102248830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	1388.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	6.2869635175438	6.3463203174447	6.07054797041375	5.87170752496647	6.19347096114295	6.4984500811309	6.21917738839591	5.99981193852085	0.140504993757813	0.579878383992549	0.815494836491523
Merged-chr18-68234774-4	chr18	68234668	68234868	+	892.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357444, intron 1 of 3)	intron (NM_001357444, intron 1 of 3)	6822.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	4.32606808570743	4.48090991970885	4.65463745318731	5.06987093974804	4.18210970539663	4.0775919348314	4.52007163361391	4.41410525138078	-0.854155108397674	0.0433502774149508	0.211779642835881
Merged-chr2-93461009-4	chr2	93460894	93461094	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	857.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	4.98467322940734	5.17699408290861	5.02075835948073	4.73839998880275	5.5745987861559	5.26217045738289	4.96146263657965	4.87034565756733	0.439087575959042	0.204812089910634	0.508303420479077
Merged-chr17-88458269-4	chr17	88458172	88458372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355742, intron 1 of 5)	intron (NM_001355742, intron 1 of 5)	17568.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	5.80614829821184	6.26805416602006	5.93092961952299	6.21118711389456	6.27174910734919	6.10767272630534	6.247063909841	6.06079863359013	0.14814423414953	0.547339156071983	0.796783882293747
Merged-chr9-40319808-2	chr9	40319708	40319908	+	653.299988	f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	1515.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	2.88983969671976	2.84697155052164	2.95035457721411	2.83668760169037	2.83778556738432	3.05984237743839	2.53518965809671	3.0061258183109	-0.026681327481781	0.967165637702805	0.988468417345796
Merged-chr7-142435726-4	chr7	142435619	142435819	+	801.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285858, intron 1 of 8)	intron (NM_001285858, intron 1 of 8)	742.0	NM_018802	55925.0	Mm.213002	NM_018802	ENSMUSG00000031098	Syt8	-	synaptotagmin VIII	protein-coding	3.41960631233095	3.40026473145245	3.72845403129738	3.35433468717126	3.54743701425424	3.47483036091878	3.28735885198462	3.6797301358683	0.101474645376045	0.843770709937516	0.940784714087665
Merged-chr18-46153247-4	chr18	46153175	46153375	+	873.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45543.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	4.41614877872535	3.94791444206755	4.33542183285561	4.31919973485118	4.50339776407446	4.32890130211563	3.98525893552254	4.24576463281051	0.0507793648333102	0.903427127888064	0.964287824952031
Merged-chr13-23433055-3	chr13	23432957	23433157	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Tyr-TAC|tRNA|tRNA	-2040.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	5.25467178280576	5.33473952233451	5.28555083637771	5.07850655027746	5.46084043375893	5.16331972556093	5.1679215916545	5.01984013781287	-0.00935655777774706	0.975588454477093	0.991347073148764
Merged-chr9-89988992-3	chr9	89988873	89989073	+	811.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357743, intron 13 of 26)	intron (NM_001357743, intron 13 of 26)	-65294.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	3.64183966751067	3.83083599373295	3.53290077516271	3.94128601623681	3.67575880248111	3.46209804603914	3.46231204239302	3.58685665529845	-0.637943099117682	0.200713955820489	0.502908288557681
Merged-chr2-30934162-4	chr2	30934055	30934255	+	930.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-18846.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	4.34527784011374	4.60889531642751	4.09553909785597	3.8971904046879	4.52106171734886	4.90545780996011	4.41366874969409	4.59123730017739	0.830714318026194	0.0467470494288821	0.222316311304764
Merged-chr13-81176277-4	chr13	81176187	81176387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 86 of 89)	intron (NM_054053, intron 86 of 89)	212213.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	5.12139496782634	5.65276633804688	5.33932303966844	4.95663116587133	5.27562831613623	5.15771247846209	5.49621530147111	4.68198069517112	-0.182865227045059	0.610642316136581	0.831845944368992
Merged-chr11-98655272-2	chr11	98655172	98655372	+	791.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029727, intron 8 of 10)	intron (NM_029727, intron 8 of 10)	8513.0	NM_029727	76758.0	Mm.159149	NM_029727	ENSMUSG00000017211	Gsdma2	2200001G21Rik|2210006M16Rik|2210009F20Rik|2210411P14Rik|Gsdm2|Gsdml2	gasdermin A2	protein-coding	3.57109507854549	3.66698191083748	3.45428111445053	3.32811299049212	3.57879278098995	3.89982768403799	3.50090735824143	3.95407314296022	0.751754218304332	0.130610809125549	0.402265015912227
Merged-chr19-46589335-3	chr19	46589233	46589433	+	978.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053196, intron 6 of 11)	intron (NM_053196, intron 6 of 11)	-9773.0	NM_001177812	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	3.41020184775297	3.09704486387629	3.19036909724787	2.9153505087274	4.01981980177695	4.09633504727245	4.29867343620419	4.31847932804551	3.45262338967418	3.26526263252237e-11	2.70568252526554e-09
Merged-chr2-91328699-4	chr2	91328544	91328744	+	916.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 3 of 8)	intron (NM_175123, intron 3 of 8)	63529.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	4.06590626474282	4.06948486316809	3.91275497797913	4.36075955247424	4.02119280036558	4.19010712472519	4.22725769487039	4.11146401929975	0.00941912866402689	0.982292041835091	0.993659734511288
Merged-chr16-49840226-4	chr16	49840119	49840319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15435.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	7.82912762053424	7.84728886795864	8.20256640993324	8.06670494686191	7.80106842763778	7.69930340152041	7.90141543957938	7.72218750884492	-0.276302004993466	0.113885664292775	0.37323392875802
Merged-chr6-32610885-4	chr6	32610784	32610984	+	904.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22692.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	4.04549626433467	4.23421577817112	4.09944736807086	4.18957328001912	4.68023777029272	4.37548067147659	4.58919770649988	4.4597262856604	0.914706251369449	0.016122312170084	0.110237277421173
Merged-chr1-58723829-1	chr1	58723729	58723929	+	880.3333130000001	f0_balb.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	-6723.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	4.86848259977829	5.46792004537463	4.39434279098621	4.0246616724083	4.41295822642554	4.79021303494098	4.46563186374133	4.29278886002776	-0.647140969580085	0.182321386453001	0.47878218634963
Merged-chr14-33808708-4	chr14	33808613	33808813	+	846.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131113, intron 3 of 3)	MER121|DNA|TcMar?	2570.0	NR_131114	218902.0	Mm.107791	NR_131113	ENSMUSG00000115751	4930503F20Rik	4930453C15	RIKEN cDNA 4930503F20 gene	ncRNA	3.69232175494702	3.60268950652081	3.97526774274529	3.80088230926817	3.89214533528055	3.44462468775832	3.77812079326732	3.52241742657072	-0.277862836392957	0.574202094290173	0.812143683447198
Merged-chr19-21747583-4	chr19	21747479	21747679	+	910.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30761.0	NM_001033759	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	4.16131897848624	4.48006345101192	4.64965133470532	4.68762713408783	4.71509496998673	4.44244678934275	4.5906044854634	4.44759842937819	0.0842963252731917	0.82539851614968	0.933089399990757
Merged-chr5-103744774-4	chr5	103744671	103744871	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9391.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	5.29682250456636	4.79773031983752	4.37948089823127	5.02015695245587	5.21629674849695	4.98032978911733	5.32399548576006	5.08684317306288	0.461055493083004	0.202023140557556	0.504557774233929
Merged-chr9-110783805-4	chr9	110783685	110783885	+	833.483337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14400.0	NM_153099	235628.0	Mm.292285	NM_153099	ENSMUSG00000044664	Prss42	Tessp2	protease, serine 42	protein-coding	4.41395717965679	4.46009757333064	4.24127734086746	4.51184079656766	4.4254430186231	4.10941505701014	4.43385601606062	3.98366477900853	-0.371799480804434	0.358215934936799	0.664307540849003
Merged-chr1-165697723-4	chr1	165697638	165697838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	10356.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	6.43887468797739	6.33240259344196	6.52364277887334	6.72333574838941	6.22615975034781	6.45100683291447	6.71108315464491	6.34588302808495	-0.124318520538093	0.597236972263372	0.825226743190871
Merged-chr10-10469316-4	chr10	10469230	10469430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	2984.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	7.65789503273134	7.88474969808517	7.94609152075466	7.9943577940403	7.96906497148759	7.92092744411472	7.93523600770576	7.74629619464343	0.0186508346126662	0.912857931207431	0.967355963460984
Merged-chr14-21280667-4	chr14	21280569	21280769	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 6 of 10)	intron (NM_134079, intron 6 of 10)	204517.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	5.24043630313509	5.179034058221	5.3284608146903	5.9640323874882	4.83632607595349	4.67839589993661	5.15392532352963	4.63686378145173	-1.21470597724784	0.000991871608824626	0.0133561160129641
Merged-chr6-38943220-3	chr6	38943111	38943311	+	892.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	ORR1D2|LTR|ERVL-MaLR	24225.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	3.41993760214153	3.31313429707112	3.04316907391977	2.76317242963853	2.8268582572705	3.02253262220153	3.09239434403955	3.04162216775062	-0.639617369188258	0.31518367475768	0.627038475150038
Merged-chr13-95957411-4	chr13	95957319	95957519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65497.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	8.10527750223037	7.85937756606591	8.20860010769148	8.06693133734598	8.02561592685432	7.77435839678832	8.16403827451203	8.07597112935917	-0.0572129733174804	0.742172837884117	0.898420415437986
Merged-chr16-27388410-4	chr16	27388319	27388519	+	986.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026202)	promoter-TSS (NM_026202)	-537.0	NM_001025615	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	5.4127835344633	5.54446794269149	4.93857531956694	5.14592685312481	5.61735839755707	5.7454409870122	5.38654814128756	5.16027070070761	0.390366889347939	0.218751367691346	0.526048298959502
Merged-chr3-135628192-4	chr3	135628085	135628285	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 6 of 24)	intron (NM_008689, intron 6 of 24)	63362.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	4.92512539067061	4.77461802666906	4.88879613632562	5.24432717562651	4.99597059497801	4.98788100841373	5.30301918223855	5.09348431124062	0.206818853199134	0.532773609436605	0.788274148708907
Merged-chr11-115654232-4	chr11	115654143	115654343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 3 of 5)	RSINE1|SINE|B4	-25948.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	6.03371763323621	6.09147113751345	5.94381249950197	6.58164817108032	6.25008208273982	6.09728818531579	6.02563197143618	6.15563290094967	-0.113919657736671	0.666865054972533	0.862159276166032
Merged-chr2-165055621-4	chr2	165055526	165055726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170704)	promoter-TSS (NM_170704)	-10.0	NM_170704	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	6.13378014227621	6.83784584458337	6.02384466380886	5.76559208889573	6.3986080439978	6.69272625111915	6.65861820641467	5.94805032927173	0.299261644445252	0.345812732085159	0.654156597669011
Merged-chr13-45955946-4	chr13	45955860	45956060	+	879.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	9031.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	4.77158320117222	4.39243410035013	5.01410842221117	4.33559221243331	4.41009514743392	4.31891250465479	4.31976009512067	4.33620742128659	-0.672757764241865	0.0977860496899316	0.342585678539137
Merged-chr2-153351529-3	chr2	153351429	153351629	+	938.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039939, intron 1 of 11)	intron (NM_001039939, intron 1 of 11)	5390.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	3.9149507188894	3.63082096448462	3.77750775072251	3.88837314468888	3.65333614654509	3.42794280656987	3.66161268792944	3.56456150398631	-0.700804016980393	0.14494121898488	0.424122138792385
Merged-chr19-59042884-4	chr19	59042780	59042980	+	983.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 3 of 16)	intron (NM_001114312, intron 3 of 16)	33189.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	5.31195209659539	5.52183317687026	5.28142294458284	5.69999335147129	5.50319549498548	5.13946041715463	5.8083133473557	4.99467548969147	-0.123902800157429	0.707497262294625	0.882483967981585
Merged-chr6-124874531-4	chr6	124874389	124874589	+	977.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013488, intron 3 of 9)	MTE2b|LTR|ERVL-MaLR	-10506.0	NM_001355257	14788.0	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	4.8915776533165	5.0400602259654	4.89238509207982	5.10195929911228	4.84847556572348	4.95506035447453	4.75848739093739	4.65562752501976	-0.375191550855994	0.2495228097579	0.56056607742034
Merged-chr4-140906285-4	chr4	140906207	140906407	+	914.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008812)	promoter-TSS (NM_008812)	-53.0	NM_008812	18600.0	Mm.2296	NM_008812	ENSMUSG00000028927	Padi2	Pdi|Pdi2|mKIAA0994	peptidyl arginine deiminase, type II	protein-coding	4.28796436435217	4.55283977541449	4.55127026247625	4.01074296034407	4.7624622249434	4.51258963068452	4.44900676439492	4.73197980758872	0.617992547666948	0.116170183299115	0.377075323577067
Merged-chr11-98796562-4	chr11	98796491	98796691	+	740.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001361932, exon 1 of 3)	exon (NM_001361932, exon 1 of 3)	1075.0	NM_028722	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	3.30740455635259	3.24326966580859	3.24757162316557	2.985369964913	3.47221760936584	3.29756836632727	3.45883112742699	3.66312108475161	1.04934342979769	0.0484327421862072	0.227190863059974
Merged-chr1-171059433-4	chr1	171059307	171059507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010188)	promoter-TSS (NM_010188)	-4.0	NM_010188	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	6.72519410275005	6.84912017850506	6.88048354522674	6.88686954594147	6.95528264881208	6.79456859007582	6.76425617257102	6.62888498537973	-0.0595246381181528	0.766260663668445	0.908573509566154
Merged-chr18-62185806-4	chr18	62185724	62185924	+	789.075012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	5724.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	4.38779336852351	4.61728698574621	4.30147413763105	4.39310605927853	4.12057435283701	4.55948321725133	4.23714162289296	4.15644371671471	-0.380834468185651	0.335436817044479	0.645839952403607
Merged-chr7-15921952-4	chr7	15921814	15922014	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009156, intron 1 of 5)	intron (NM_009156, intron 1 of 5)	457.0	NM_009156	20364.0	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	5.72941999314211	5.67418040006255	5.7079199380517	5.27834578827332	5.29025220864197	5.3837971665714	5.39895099601793	5.2044023827919	-0.483439912984321	0.101348363797715	0.349327869353383
Merged-chr11-63020841-4	chr11	63020749	63020949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16715.0	NR_126547	74884.0	Mm.363520	NR_126547	ENSMUSG00000087604	Cdrt4os1	4930452L02Rik	CMT1A duplicated region transcript 4, opposite strand 1	ncRNA	5.79616499099901	5.56807810089241	5.932640035207	6.11217885418004	5.76194912724753	5.79489086902862	5.98455933260847	5.23477237611904	-0.251615805387707	0.396711308610406	0.695372415340369
Merged-chr7-25704907-4	chr7	25704818	25705018	+	959.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011577, exon 7 of 7)	exon (NM_011577, exon 7 of 7)	14135.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	4.97036665057962	4.98099628092754	5.0053103377227	5.02184903288597	5.26331202161825	4.79433386574435	4.87683022545284	4.89682836848098	-0.0164934396180664	0.95957843055462	0.985551429297447
Merged-chr5-74961318-2	chr5	74961215	74961415	+	640.0	f0_balb.idr|f0_c57.idr	intron (NR_045866, intron 2 of 4)	intron (NR_045866, intron 2 of 4)	12121.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	3.38992124661748	3.55949921088043	3.50475862617376	3.52116369945625	3.57215749087178	3.50320440166154	3.64388086336496	3.50287633925163	0.196020491890782	0.685241397214732	0.87127413608809
Merged-chr15-34356831-3	chr15	34356728	34356928	+	866.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256161, intron 1 of 3)	hAT-N1_Mam|DNA|hAT?	1044.0	NM_001256161	77358.0	Mm.402759	NM_001256161	ENSMUSG00000094447	9430069I07Rik	-	RIKEN cDNA 9430069I07 gene	protein-coding	3.32549782237985	3.54127573696464	3.82415500859922	3.8139896687167	3.20490775611226	3.16814527403456	3.37278081255621	3.2620576982311	-1.40427259385936	0.0113414087815988	0.0863021312449673
Merged-chr9-21166260-4	chr9	21166161	21166361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	CpG	547.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	5.11273932225251	5.66728985646858	5.65198450668992	5.5126067579548	5.75505971209461	5.92548000629625	5.67372226680248	6.00555217897925	0.556820688132228	0.0459042373714878	0.219919588468417
Merged-chr8-25602140-4	chr8	25602032	25602232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308482)	promoter-TSS (NM_001308482)	-152.0	NM_001001735	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	7.569911227436	7.71754263684612	7.43819820864734	7.47994538889634	7.80969966345739	7.83553331390227	7.91776867899085	7.57497542298004	0.311204702662973	0.0786989840257305	0.303566627863625
Merged-chr2-84670752-4	chr2	84670654	84670854	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037279)	promoter-TSS (NM_001037279)	-46.0	NM_001037279	72657.0	Mm.259293	NM_001033166	ENSMUSG00000076437	Selenoh	2700094K13Rik|Selh	selenoprotein H	protein-coding	5.49149382375044	5.08191522179319	5.20202211944114	5.41614091962563	5.46093136499691	5.04998150108268	5.5151784557866	5.23066043155782	0.0399806119721431	0.896002425673363	0.960994089571403
Merged-chr19-46598943-4	chr19	46598837	46599037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177812)	promoter-TSS (NM_001177812)	-169.0	NM_001177812	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	8.59669281270728	8.78881274558554	8.46730033424923	8.52604287788742	8.69025858297596	8.76184767428917	8.48785631278873	8.4669323656883	0.0110480107343809	0.945854726633755	0.980641198659378
Merged-chr5-138996125-6	chr5	138995959	138996159	+	993.194458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-11694	-1106.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	5.60479627389669	4.71219253632273	5.1426800259998	5.14095605642107	5.30565933494614	5.25101740315733	4.90487882389534	5.40514078283672	0.0904447133008494	0.794834222494098	0.920615503025147
Merged-chr3-9705289-3	chr3	9705166	9705366	+	764.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 3 of 7)	intron (NM_053182, intron 3 of 7)	-95181.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	3.14819945924546	3.25427255386668	3.32474090419729	3.35505365804669	3.32260706475536	3.3797565422662	3.19870256684205	3.26689264897014	0.0551330580779831	0.917002900485176	0.969376770379679
Merged-chr17-35897406-4	chr17	35897315	35897515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033630)	promoter-TSS (NM_001033630)	-37.0	NM_001033630	69662.0	Mm.260159	NM_001033630	ENSMUSG00000050705	2310061I04Rik	-	RIKEN cDNA 2310061I04 gene	protein-coding	5.63589569489614	6.03235183352947	5.66397018608064	5.53839452265361	6.13654933915715	5.89236644694915	5.78585676658392	5.85797047919986	0.339225555483053	0.207617873489886	0.511639962909199
Merged-chr19-55649564-4	chr19	55649459	55649659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	52645.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	8.42547186002112	8.44458966819423	8.17133010640001	7.99445490636677	8.11723819407175	8.57931350231817	8.35202520775882	8.05651746708526	0.0284316350661715	0.884129315829317	0.956390337098447
Merged-chr19-6891311-4	chr19	6891208	6891408	+	922.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-18390.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	4.41472202230929	4.25483753338932	4.41545563374503	3.55829104488913	4.35413877338374	4.5066077802847	4.22927635830999	3.76970858522753	0.0973570020321756	0.845725500010104	0.941564790489552
Merged-chr1-152774774-4	chr1	152774672	152774872	+	991.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026369, exon 4 of 4)	3' UTR (NM_026369, exon 4 of 4)	8230.0	NM_026369	67771.0	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	4.71251422719702	5.33485863943744	5.29066674615941	4.80960930260561	4.80318540037651	4.97358601882902	5.02631489399158	5.04758879984389	-0.189302862076785	0.586296170953065	0.818578983391228
Merged-chr8-128709420-4	chr8	128709316	128709516	+	865.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010578, intron 3 of 15)	B3|SINE|B2	23762.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	3.93738275492231	3.91562915152671	3.98764278185645	3.7904595947568	4.1150249097039	3.89683912372843	4.2694682668552	4.07908949876296	0.53853626164819	0.200802272948604	0.502954771329753
Merged-chr19-5661671-4	chr19	5661542	5661742	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164480, intron 1 of 16)	intron (NM_001164480, intron 1 of 16)	2065.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	4.3928979015582	4.08854664046613	4.260293646083	4.11825388624656	4.38297313710996	4.47980579288101	4.53035963647545	4.58567785586831	0.673408730442649	0.0738421327570479	0.29273234015672
Merged-chr7-28350684-4	chr7	28350593	28350793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013647)	promoter-TSS (NM_013647)	4.0	NM_013647	20055.0	Mm.702	NM_013647	ENSMUSG00000037563	Rps16	AA420385|AI317031	ribosomal protein S16	protein-coding	8.01657679686178	8.32972866857519	8.27924679449576	7.85287249705324	8.29995515842013	8.52265796024719	8.17124155268657	8.31791852093567	0.261012893369138	0.154510533452763	0.439801241388062
Merged-chr16-91012051-4	chr16	91011941	91012141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164483)	promoter-TSS (NM_001164483)	-733.0	NM_001164483	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	6.0629532058465	6.06254143861851	5.75234715568577	6.02516176908772	6.22115400190585	6.52209120866718	6.26403802357499	5.97171454445176	0.414531180781376	0.0934576030597633	0.334349554090817
Merged-chr13-30674129-4	chr13	30674033	30674233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 3 of 7)	intron (NM_134068, intron 3 of 7)	14074.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	5.63162898840266	5.53438438143518	5.94077393625873	6.1008038660234	5.63150994766901	5.57653088771835	5.60424640628791	5.91534698539356	-0.246904253051897	0.384566265865537	0.686058353293141
Merged-chr3-144720303-4	chr3	144720236	144720436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282042)	promoter-TSS (NM_001282042)	-1.0	NM_001282037	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	7.92235568703321	8.39399518276802	8.35177970227949	8.49727048234918	8.51674558800486	8.5296202951247	8.8796218930277	8.54859844682791	0.39260649189066	0.0360722314858253	0.188765281938653
Merged-chr4-11033071-2	chr4	11032971	11033171	+	585.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25452.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	3.18158312516428	2.91631598827147	2.91022392432898	3.04322268049301	2.89062185572543	2.66820740688803	2.77444411826799	2.78164244234592	-1.05616201597004	0.0988464360758261	0.344693043736366
Merged-chr15-81011369-6	chr15	81011145	81011345	+	835.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134091, exon 20 of 22)	exon (NM_134091, exon 20 of 22)	33480.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	3.04078269470607	3.11816187914036	3.28698717777528	2.96616530990142	3.54442782500834	3.21818708911386	3.3800464467179	3.28517981678316	1.01540199877538	0.0631628734106148	0.266658965984232
Merged-chr3-103058309-4	chr3	103058197	103058397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010937)	promoter-TSS (NM_010937)	12.0	NM_010937	18176.0	Mm.400954	NM_010937	ENSMUSG00000027852	Nras	AV095280|N-ras	neuroblastoma ras oncogene	protein-coding	6.4669846204976	6.20947064837561	6.26187776758011	6.38952701963837	6.95285146961397	6.61009526506666	6.55007874366364	6.99170875221429	0.665379126417707	0.00302637535463683	0.0321994576035419
Merged-chr5-124050582-4	chr5	124050482	124050682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18322.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	6.43882461148829	6.96427673558219	6.32869550934144	6.55607491246239	6.80298463273237	6.66867542040005	6.31546800210682	6.52107958555553	-0.00485729127378718	0.984222867861943	0.994280354696281
Merged-chr17-35210809-2	chr17	35210709	35210909	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5458.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	2.93550399663835	3.01783610969663	3.06727194156461	2.7177004251771	3.13412129924546	3.24198863800931	3.47397742846934	3.18512242036971	1.35162935447377	0.020220282833751	0.128996516485362
Merged-chr11-78213281-4	chr11	78213176	78213376	+	987.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009297, exon 29 of 37)	exon (NM_009297, exon 29 of 37)	19884.0	NM_001045516	216974.0	Mm.50974	NM_001045516	ENSMUSG00000044122	Proca1	4933404M19Rik	protein interacting with cyclin A1	protein-coding	5.66587487242997	5.86068515653356	4.99616216869557	5.84221966842724	5.5065217920225	5.43912082964127	5.66255696898745	5.66284846104334	-0.131713867439548	0.674339295171655	0.866122860641367
Merged-chr15-100461192-4	chr15	100461079	100461279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-7832.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	6.21279423993239	6.47920171037456	6.17170590103083	6.09987896508203	6.81433240731321	6.60039495423486	6.93529126844049	6.47084693453155	0.701862266898523	0.00230770165378349	0.0261227569997861
Merged-chr13-9125380-4	chr13	9125271	9125471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 3 of 17)	intron (NM_172585, intron 3 of 17)	31490.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	7.66675510936395	7.99849988051474	7.63376762112083	7.98088994290458	7.86486150648039	7.29256746037418	7.85379794192965	7.64579516752197	-0.192381198871984	0.345201798161334	0.65351210560772
Merged-chr11-94412749-3	chr11	94412621	94412821	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009783, intron 33 of 35)	intron (NM_009783, intron 33 of 35)	-19745.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	3.40049198653122	3.43893799703418	3.89726475425137	3.77409387603163	3.37636075363117	3.38696903331523	3.38882549503142	3.67111316643468	-0.619063400504892	0.239445247963949	0.549860411176471
Merged-chr7-107594048-4	chr7	107593952	107594152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008905)	promoter-TSS (NM_008905)	-999.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	6.78533868644867	6.8543845998353	6.68206486455883	7.13000835366688	6.79159787338516	6.62108228630093	7.08818784329092	6.95573503147926	-0.0196539064985451	0.929123885864651	0.974317157505369
Merged-chr8-104219992-4	chr8	104219874	104220074	+	865.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001141922)	TTS (NM_001141922)	28584.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	3.95689749539887	4.57802902930061	3.89949275490825	4.30610960855952	4.51478406774115	4.19134887658189	4.44690009703713	4.34482149551452	0.38134370557714	0.377267960420298	0.67996861637713
Merged-chr5-120613397-4	chr5	120613269	120613469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029096)	promoter-TSS (NM_029096)	239.0	NM_028041	71990.0	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	7.63684010445867	7.65644766611204	7.30902981097976	7.24396133917349	7.47921884460162	7.51824162322874	7.53294300325402	7.52958009470069	0.0627038498630773	0.740105102025127	0.897683586969888
Merged-chr2-32441672-3	chr2	32441572	32441772	+	834.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146118, intron 1 of 10)	intron (NM_146118, intron 1 of 10)	-8785.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	3.51360424134788	3.86085911343096	3.32304484971153	3.12709900936223	3.83983487238746	4.08751487885293	3.76520014437671	3.45152699581787	0.983946587521144	0.0734715989233868	0.29196264737426
Merged-chr11-120796450-4	chr11	120796349	120796549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026824)	promoter-TSS (NM_026824)	-54.0	NM_026824	68730.0	Mm.180622	NM_026824	ENSMUSG00000025155	Dus1l	1110032N12Rik	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding	6.55241178767613	7.05002362668848	6.19153504649391	6.36300911456074	6.76107448421635	7.02353112522949	6.59993979362367	6.7477064972444	0.299962617832079	0.245251601852803	0.556302223335904
Merged-chr4-151842141-5	chr4	151842007	151842207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 1 of 23)	intron (NM_001081557, intron 1 of 23)	19661.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	3.88417516152201	3.82964312602275	4.36661607689773	3.95297115218291	3.92276764170442	3.7081934706623	3.92036915135198	4.39945013832958	-0.0217516309528585	0.9634328745073	0.986954574291407
Merged-chr2-36217179-4	chr2	36217067	36217267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13259.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	7.23089293704886	6.9481796711655	7.0693149786372	7.45877878472449	7.29349021562009	7.24661618816203	7.32982087421031	7.35150539853412	0.136066642794077	0.496649774943234	0.766593513949695
Merged-chr7-73533090-4	chr7	73532946	73533146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	8700.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	5.49162991631169	5.51279373614001	5.59817900251445	5.50325453562916	5.31394847225315	5.42759074808823	5.56990401631909	5.43248434626252	-0.159399723850162	0.5555622935588	0.801586928313244
Merged-chr19-29571266-4	chr19	29571161	29571361	+	882.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081319, intron 8 of 25)	MTEb|LTR|ERVL-MaLR	48979.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	3.58506967474634	3.61568385705144	3.99282445439595	3.95948763532629	4.0751416183234	3.70219394902958	3.83855519529456	3.64210411867999	0.0739470448303598	0.879044671407832	0.954746715269166
Merged-chr2-159992446-4	chr2	159992356	159992556	+	902.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24197.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	4.96661203669404	4.26612004301273	4.22408776519872	4.4693320632576	4.30284986935329	4.58552859249573	4.47515736533399	4.36441261419928	-0.182738017182216	0.654331224343426	0.855606647526205
Merged-chr9-89227963-4	chr9	89227849	89228049	+	899.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359993, intron 2 of 2)	URR1B|DNA|hAT-Charlie	16565.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	4.42244685865899	4.31064273981033	4.65374375091417	4.16094466184136	4.40948208526521	4.10034732473028	4.5596313244391	4.61502774593447	0.120116840912029	0.764744095080576	0.907812114625849
Merged-chr17-47760205-4	chr17	47760108	47760308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	22277.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	6.49399275001795	6.17008754652198	6.94122457653505	7.17420320662323	6.54183948999212	6.31886972109923	6.62300524371388	6.83557036201115	-0.245835607015751	0.381817854173732	0.684017296351366
Merged-chr13-42866742-4	chr13	42866631	42866831	+	887.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302636, intron 1 of 12)	intron (NM_001302636, intron 1 of 12)	484.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	4.21329973778012	3.95810519868753	4.40343395967631	4.06736394968087	3.89994722968584	3.77829301768623	3.87315184663004	3.83286976636751	-0.859924915009236	0.0521238155780088	0.237677345560035
Merged-chr14-46873935-1	chr14	46873835	46874035	+	567.0	f0_balb.idr	Intergenic	LTR50|LTR|ERVL	-9030.0	NM_028966	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	3.87801890764815	3.50323509247211	3.46792940950255	3.63982137943824	3.5312693030065	3.70049939886872	3.62308147503172	3.73741891069374	0.0468607091306516	0.922777462213417	0.971413012934631
Merged-chr1-184535807-4	chr1	184535678	184535878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040472, intron 2 of 5)	intron (NR_040472, intron 2 of 5)	21913.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	6.72214354801338	6.99549308565248	7.06642111961972	6.73947018478226	6.3924368995087	6.72842961940182	6.67440232606145	6.3276298276204	-0.498576474831371	0.0250590632034984	0.148664297928677
Merged-chr11-62866859-4	chr11	62866772	62866972	+	951.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033669, intron 8 of 12)	MIR|SINE|MIR	-12583.0	NM_001356520	67510.0	Mm.9806	NM_026210	ENSMUSG00000014177	Tvp23b	1810036I24Rik|Fam18b|Fam18b1	trans-golgi network vesicle protein 23B	protein-coding	4.56477792340562	4.21184004365	4.60659903299291	4.97294747681034	4.79816502979026	4.73942821561197	4.50264724911895	4.79106257750056	0.163899949112576	0.676190056718043	0.867069478563613
Merged-chr3-103207257-2	chr3	103207157	103207357	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	35602.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	2.92157209354185	2.81971847955843	2.86202553251879	2.7290504115707	2.84518924935697	2.69478543943606	2.72484750213836	3.08454328735322	0.0830914410929257	0.894658318878406	0.960655379918931
Merged-chr11-79527508-4	chr11	79527398	79527598	+	979.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033711, exon 2 of 2)	exon (NM_001033711, exon 2 of 2)	3111.0	NM_146023	101488212.0	Mm.439665	NM_146023	ENSMUSG00000070354	Evi2	Evi2a-evi2b|Gm21975	ecotropic viral integration site 2	protein-coding	4.46357299715014	4.67484330924282	4.17552010133235	4.64281450629435	4.5454156311551	4.45668958866919	4.74675721188054	4.66067107386099	0.196317125409633	0.601227005822111	0.827071740947179
Merged-chr15-76745275-4	chr15	76745175	76745375	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 3 of 10)	intron (NM_198420, intron 3 of 10)	-21430.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	5.36265275764775	5.30997739864435	5.33500200658056	5.3992474925889	5.14781689077766	5.22051845662682	5.05535424849398	5.272186971444	-0.333115696315311	0.245049633462632	0.556170860493583
Merged-chr5-124425189-2	chr5	124425089	124425289	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081203, intron 1 of 31)	CpG	413.0	NM_001359979	243272.0	Mm.23879	NM_145631	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch 1	protein-coding	4.0385163729484	4.43084757663134	4.63950288727895	4.26700142244114	4.27840582998736	4.41506468870743	4.02294769203275	4.49188988209525	-0.109255584246153	0.791964327195181	0.919415919321271
Merged-chr17-35394571-3	chr17	35394447	35394647	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_051981, exon 2 of 3)	non-coding (NR_051981, exon 2 of 3)	448.0	NR_051981	15016.0	Mm.439648	NR_051981	ENSMUSG00000055413	H2-Q5	H-2Q5|Qa-5|Qa5|Qat-5	histocompatibility 2, Q region locus 5	pseudo	4.53407541522938	4.29509070288636	4.16264530483489	3.34485146602611	4.47545874756748	4.33905096064292	4.32106247511208	4.1112986940118	0.390118030263497	0.445586155253338	0.731584364283378
Merged-chr13-114458490-3	chr13	114458401	114458601	+	888.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301375, intron 1 of 5)	intron (NM_001301375, intron 1 of 5)	450.0	NM_001301373	14313.0	Mm.4913	NM_008046	ENSMUSG00000021765	Fst	AL033346|FS	follistatin	protein-coding	3.37809983942233	3.20735825250921	3.26867828101189	3.44360752089514	3.32266126138568	3.05184765475335	3.31200647962941	3.26699772988196	-0.318274152269424	0.558752392056346	0.80334975890639
Merged-chr10-25219376-2	chr10	25219276	25219476	+	949.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 7 of 7)	intron (NM_018747, intron 7 of 7)	-19206.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	3.28440494476311	3.17236554336058	3.34169154883709	3.21625569900075	3.24796190867814	3.33738772951355	3.32866647112132	3.49646362050057	0.368262090624397	0.479562959421896	0.755306574874285
Merged-chr19-60874541-4	chr19	60874442	60874642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007452)	promoter-TSS (NM_007452)	-4.0	NM_007452	11757.0	Mm.29821	NM_007452	ENSMUSG00000024997	Prdx3	AW822249|Aop1|D0Tohi1|Ef2l|Mer5|Prx3|SP22|TDXM	peroxiredoxin 3	protein-coding	8.1715249053699	8.31321347300496	8.3583154150765	8.4008741200186	8.19814929825537	8.02749726943142	8.36522996155018	7.48316489638776	-0.323731429831019	0.122078115461363	0.387242288214953
Merged-chr2-84627429-4	chr2	84627338	84627538	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	22042.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	5.75241472225854	5.41777127333939	5.95632669038735	5.92735880722966	5.28033962106231	5.15318556104856	5.42175538976379	5.16054899148625	-0.925866149895323	0.00168896193074044	0.0204801739809495
Merged-chr16-57200700-1	chr16	57200600	57200800	+	607.25	f0_balb.idr	intron (NM_026254, intron 5 of 17)	MIRc|SINE|MIR	771.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	3.3563450162856	3.364918455616	3.20800426300875	3.13797674421378	2.58830732581104	2.80850683003731	2.76672176595399	2.61971702543552	-3.02779449662231	8.17705003206889e-05	0.00171236906217308
Merged-chr16-36987695-4	chr16	36987585	36987785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358217, intron 1 of 3)	intron (NM_001358217, intron 1 of 3)	2782.0	NM_001358217	207215.0	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	6.13287152272984	6.73420198456918	5.87963432274641	5.47329575215943	6.55990433305181	6.59034489436344	6.18315016931107	6.41022261937941	0.465976812197459	0.144848582475706	0.424036712956412
Merged-chr7-34302097-4	chr7	34301949	34302149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16440.0	NM_172741	233103.0	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	4.93063369402273	4.95525093421276	4.67614179677159	5.15090566383628	4.67888780840358	4.20206867182994	4.76911308533008	4.82502811145614	-0.635296590811695	0.0877202828858916	0.323079893176802
Merged-chr2-165922557-4	chr2	165922420	165922620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37682.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	5.64308672396405	5.23537940625599	5.25352193744035	5.05016300541797	5.61435636783063	5.52317536322715	5.61532036122926	5.40341782001144	0.441127596624113	0.136242534419133	0.410690032931242
Merged-chr3-21983218-3	chr3	21983103	21983303	+	915.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-93449.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.13883422459825	3.92833079328627	4.00096083716183	3.95537902276341	3.9095504313345	3.96717573842069	4.35647944749561	3.89736388711428	0.109216121658654	0.800673325663235	0.923103471519366
Merged-chr4-123748166-2	chr4	123748066	123748266	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023423, intron 1 of 4)	intron (NM_023423, intron 1 of 4)	2133.0	NM_023423	68050.0	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	3.23871634027589	3.28405225621914	3.56868943876573	3.04689321874137	2.96267254099874	3.47509225542905	3.45301349669248	3.56643307434835	0.314847964215207	0.589778054300971	0.820559267534966
Merged-chr6-32521925-3	chr6	32521836	32522036	+	813.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	MTD|LTR|ERVL-MaLR	10795.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	3.07438060486146	3.20029561841918	3.57207501049092	3.47968268558506	2.97926064304861	3.31504213738177	3.25040862011984	3.31789885491174	-0.492069570841911	0.394564278002823	0.693682147756976
Merged-chr13-9494298-3	chr13	9494207	9494407	+	626.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 2 of 36)	intron (NM_001081426, intron 2 of 36)	217782.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	3.78709182714175	3.4066566141884	3.78766210322956	3.83992434868012	3.92812551689432	3.31546640023351	3.33173106575477	3.68771583950365	-0.356158761908151	0.517069004030141	0.778650107640879
Merged-chr6-48642969-3	chr6	48642865	48643065	+	671.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4269.0	NM_001077410	243374.0	Mm.86514	NM_212486	ENSMUSG00000064262	Gimap8	Gm457|IAN9|IMAP8	GTPase, IMAP family member 8	protein-coding	3.44647141878889	3.17226311557287	3.08358385437429	3.63285020093566	3.59362955795666	3.44927482947103	3.32438661217065	3.27620858242273	0.188860902902543	0.741010426591904	0.898139463026673
Merged-chr10-83922804-4	chr10	83922693	83922893	+	934.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	177904.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	4.23300691273379	4.38381726931612	4.1826101503269	4.45726957027056	4.63716719915359	4.45908624386856	4.83178179644431	4.57969786145067	0.680312887371068	0.0691809908494355	0.281224086103482
Merged-chr6-54659134-3	chr6	54659033	54659233	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-22491.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	3.81538053040985	3.56081127301177	4.1429671972259	2.73756423548457	3.06965449507353	3.43329307810106	3.70211630243608	3.71688786336742	-0.499454747046254	0.46516940509991	0.745777712133849
Merged-chr7-19910940-3	chr7	19910829	19911029	+	913.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027514, intron 4 of 7)	intron (NM_027514, intron 4 of 7)	10214.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	3.29973013346417	3.57483062957574	3.63379492295272	3.52933404338578	3.30815635636371	3.41297685963004	3.66569187929216	3.47580273183357	-0.162053438120151	0.751262689166408	0.902060171258026
Merged-chr2-98666498-7	chr2	98666374	98666574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SYNREP_MM|Satellite|Satellite	1198817.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	10.757113820701	9.92424923725414	11.5136801569432	11.0042298247004	11.0594958589594	11.2426858431618	10.7537778701021	12.1810242077736	0.611697990739484	0.266049840395277	0.577792878398029
Merged-chr2-45205901-1	chr2	45205801	45206001	+	644.0	f0_balb.idr	Intergenic	Intergenic	-88459.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	2.56210521193137	2.30392671577481	2.38848051585993	2.6490955032174	2.00057151455478	2.13324793805932	2.03013608285904	2.03318652354576	-3.98193138376553	0.000397451145310885	0.00641209770446135
Merged-chr11-85710365-4	chr11	85710265	85710465	+	967.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045875, intron 1 of 5)	intron (NR_045875, intron 1 of 5)	9379.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	4.84260988734608	4.70072196595015	5.0597082675167	5.85624972394756	4.97405611384814	4.6206463402407	5.15994834632058	4.91629704678526	-0.546016098858512	0.190863173241228	0.490284569083293
Merged-chr2-142712953-4	chr2	142712868	142713068	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081133, exon 19 of 26)	exon (NM_001081133, exon 19 of 26)	188496.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	5.0592160590284	5.04980440793411	5.83267950959481	5.91863015781333	5.14602968912346	5.00333342769391	5.1732997224251	5.22782939181421	-0.720937107386707	0.0438366953296494	0.21326308091512
Merged-chr16-31274820-1	chr16	31274720	31274920	+	1000.0	f0_balb.idr	intron (NM_025800, intron 1 of 5)	CpG	457.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	5.21373492906043	5.28858164927537	5.73134932843519	5.01680220226545	5.25557733682414	5.18511911694039	5.15683772787532	5.27333648350641	-0.188913876080036	0.556146283571901	0.801835080198288
Merged-chr6-37258755-3	chr6	37258660	37258860	+	973.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	41216.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	5.04688349076483	4.06388788243849	4.41769668279176	4.76900408188033	3.41875991415768	3.90579171007745	3.88156143816592	3.42320733919284	-2.63870687330357	1.53077052599476e-06	5.16147395877694e-05
Merged-chr6-89422165-4	chr6	89422079	89422279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-59566.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	7.40965466724008	7.56818876587259	7.52605229625795	7.33199294294229	7.71132576474403	7.84999312004465	7.57714661130179	7.51167305078628	0.28121695776538	0.116420882125735	0.377476808870985
Merged-chr11-89051956-2	chr11	89051866	89052066	+	811.099976	f0_c57.idr|f1_c57bl6.idr	intron (NM_019505, intron 3 of 10)	L1MB8|LINE|L1	8782.0	NM_019505	56077.0	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	3.4298535695582	3.8144112901201	3.92207377033048	3.66478315332157	4.36108697092331	4.04627550208783	4.33426531034451	4.23760735188493	1.44326802727082	0.00115007170006739	0.0150673575444684
Merged-chr5-143527668-4	chr5	143527588	143527788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347530, intron 1 of 6)	CpG	305.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	5.56985927577556	5.47586389255237	5.59754327231666	5.17344179445098	5.79402690380991	5.74578570092905	5.54273945189641	5.87617719539259	0.515919317761342	0.063835595942607	0.268345571579938
Merged-chr10-111107593-4	chr10	111107484	111107684	+	978.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-57218.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	5.49992026014746	5.40631257123043	5.30045194250524	5.56345398335656	5.2884287877258	4.91101200903268	5.52464203579374	5.54880565131725	-0.194743280162911	0.521549780668908	0.781462832085722
Merged-chr1-153486978-3	chr1	153486889	153487089	+	987.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007842, intron 1 of 27)	CpG	671.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	3.5848459809349	3.92546525579453	4.0101042342246	3.92684235116868	4.0918944320842	3.823894524529	3.63335559893644	4.13627672810823	0.188518928164218	0.687920554449069	0.87257074872168
Merged-chr2-154687752-3	chr2	154687646	154687846	+	640.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	30720.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	2.92788996580064	2.83123398227147	3.04644407709217	3.00118875920449	2.68393371490011	2.83528001860527	2.72073187601072	3.29877164531008	-0.200523518885665	0.759092499880922	0.905467910117288
Merged-chr14-8132966-4	chr14	8132842	8133042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 4 of 19)	intron (NM_001360314, intron 4 of 19)	34731.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	7.29205782094717	7.60625166772282	7.72264463497878	7.7185284794748	7.45041140882539	7.36810047708558	7.48469266146665	7.42215143484958	-0.226105172275141	0.219349543113161	0.526898155856389
Merged-chr5-101999770-3	chr5	101999693	101999893	+	868.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	70128.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	4.15150873894657	3.55406784978565	3.63119229199006	4.21462217723707	3.42298259785027	4.01719520840953	3.61738525928912	3.68621933665448	-0.666505922045454	0.210312179101779	0.514797984672291
Merged-chr3-90509145-4	chr3	90509037	90509237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293777, intron 1 of 5)	C-rich|Low_complexity|Low_complexity	361.0	NM_001293776	66511.0	Mm.154136	NM_023215	ENSMUSG00000001017	Chtop	2500003M10Rik|Fop|Srag	chromatin target of PRMT1	protein-coding	5.91641042081587	6.01010882205573	5.80745625807728	5.52242807241302	5.40530789107386	5.58299570217573	5.65804473259308	5.5774307417889	-0.435911014462072	0.117250471638171	0.378690610061639
Merged-chr13-85285383-3	chr13	85285286	85285486	+	706.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145452, intron 1 of 24)	PB1|SINE|Alu	4100.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	3.8104896579979	3.30510959584571	3.9065333320897	3.77842460528534	3.46287117533355	3.9819454592772	3.69281307214351	3.94918062774916	0.189370782505663	0.714168861618935	0.885697313573214
Merged-chr9-37232611-3	chr9	37232513	37232713	+	924.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020258, intron 17 of 17)	intron (NM_020258, intron 17 of 17)	23125.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	3.0441735042218	3.04696268675602	3.80209639005482	3.75217948526329	2.68463441144055	2.7053857578778	2.67298164542199	2.83551459132397	-3.70651561688958	1.89142182009063e-05	0.000484453090076397
Merged-chr11-31852101-3	chr11	31852008	31852208	+	932.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18832.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	3.46676091074103	3.41327610977189	3.3653950586648	3.51442125103904	3.22024020769132	2.8782307114042	2.99158776723128	3.25288984016644	-1.31673990917583	0.0265216127020661	0.154520902882898
Merged-chr17-70753720-4	chr17	70753629	70753829	+	975.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	93048.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	5.6657092151172	5.19414044052588	5.307788459402	5.19999119127095	5.21147631465805	5.4211158850773	5.05633616059252	5.07742579935333	-0.268292227801929	0.387439196001965	0.688285485118024
Merged-chr15-80800915-3	chr15	80800822	80801022	+	927.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177124, intron 1 of 21)	intron (NM_177124, intron 1 of 21)	2312.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	4.32907513455673	3.7045463510936	3.79440715019776	4.20732755244636	3.83651858962885	4.21519063040917	3.66541759170619	3.79231829263544	-0.406793029932542	0.405598857529265	0.702341680428793
Merged-chr1-184471543-4	chr1	184471440	184471640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86151.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	5.81967150732113	5.73619827421602	5.77125186950238	6.44161532886819	5.61920838995542	5.81655276413858	6.1812861372282	5.74172036604757	-0.233517185467354	0.444160226424409	0.730574496387276
Merged-chr4-150557046-4	chr4	150556940	150557140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	95134.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	7.02376146309033	6.65025343595367	6.55057448806963	6.48724823520712	6.78138702843341	6.74471093139412	6.93028355537494	6.88535551846208	0.218241072043247	0.318702239932384	0.630539142678577
Merged-chr7-19309649-4	chr7	19309500	19309700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008036, exon 1 of 4)	5' UTR (NM_008036, exon 1 of 4)	445.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	6.68876426127408	6.75993239921435	5.6235787072915	5.66417163404267	6.80918686209533	7.14893728974271	6.53474559291103	6.82188184838571	0.797288100418364	0.0167540304143176	0.113423542977051
Merged-chr14-25479968-4	chr14	25479869	25480069	+	912.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	20784.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	4.27571426870163	4.10395166440056	4.17006080887761	4.07555231298593	4.97160597391896	4.91784680656149	4.91819086539104	4.99938916458335	1.77415595995098	3.30596987133269e-07	1.27060275092651e-05
Merged-chr9-78448243-4	chr9	78448159	78448359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026658)	promoter-TSS (NM_026658)	49.0	NM_026658	68291.0	Mm.291779	NM_026658	ENSMUSG00000032342	Mto1	2310039H01Rik|5730419A02Rik	mitochondrial tRNA translation optimization 1	protein-coding	6.95576606739554	7.18063919893309	6.82372257292307	7.05169288355712	7.02116762427354	6.88318324801883	6.54238918683578	6.68559688520075	-0.293420751210765	0.171199060978405	0.464294934178781
Merged-chr17-71595230-4	chr17	71595131	71595331	+	826.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027953, intron 1 of 2)	intron (NR_027953, intron 1 of 2)	3050.0	NR_027953	68789.0	Mm.75202	NR_015549	ENSMUSG00000085492	Trmt61b	1110039F03Rik|623451|Gm6431	tRNA methyltransferase 61B	ncRNA	4.56117455079284	5.04920922339435	4.28192133614475	5.00468808513458	4.29721330829705	4.89181365032001	4.498660584346	4.55896913213978	-0.432639667581495	0.293578112099039	0.606049780774289
Merged-chr19-36349148-7	chr19	36348941	36349141	+	990.693848	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-30026.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	4.45314811781177	4.30404333178544	4.71810054075243	4.35183296866551	4.3941957415087	4.35249368519527	4.39131991909915	4.6804328805811	0.00767806096918354	0.983878337419894	0.994177974055515
Merged-chr3-54680238-3	chr3	54680153	54680353	+	631.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12562.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	3.55303579352263	3.60739523619	3.93566696677656	3.4539164183339	3.44123537377098	3.61307781060021	3.48348028292089	3.65825106045796	-0.296115664355527	0.555326977262393	0.801484628625651
Merged-chr6-33515497-4	chr6	33515404	33515604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	266376.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	6.59438249461786	6.41925045956666	6.43540272486978	6.64795984853174	6.51764605786803	6.42857889412466	6.13866150926953	6.05586461886042	-0.33419796473461	0.152454486153316	0.436612129633335
Merged-chr14-27172299-3	chr14	27172202	27172402	+	925.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	MTC|LTR|ERVL-MaLR	28309.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	3.61079914430881	3.22945947538618	3.79378675573571	3.55468364627387	3.41334271571645	3.32333016810537	3.38520081201939	3.33684217234541	-0.656005407462553	0.217089736908296	0.523902796872516
Merged-chr8-90876550-4	chr8	90876451	90876651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	47716.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	7.6324003905989	7.80364734362391	7.97019995187428	7.9644239105478	7.62065233842342	7.30001894275446	7.48912818756477	7.59366784477721	-0.449784472523319	0.0134408862502466	0.0972734295779023
Merged-chr10-93889795-4	chr10	93889652	93889852	+	990.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019648, exon 2 of 12)	5' UTR (NM_019648, exon 2 of 12)	1450.0	NM_019648	56307.0	Mm.289329	NM_019648	ENSMUSG00000036112	Metap2	4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2	methionine aminopeptidase 2	protein-coding	4.85931331032823	4.57912844247781	4.82486678506161	4.99264138341616	4.80606732692454	4.53699037376999	4.99805501965055	4.54349384285666	-0.188353123580705	0.597901782369577	0.825632463572035
Merged-chr7-31125538-5	chr7	31125361	31125561	+	784.11499	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011322, intron 1 of 5)	intron (NM_011322, intron 1 of 5)	1562.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	3.9659351640931	3.9737554859439	4.14773497409553	3.92727526186039	3.85182923044846	3.98642682603891	4.12881028627707	3.75351921715036	-0.1809482168138	0.676854869152405	0.867299984077957
Merged-chr17-81518838-4	chr17	81518762	81518962	+	838.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	219525.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	3.95952772028973	3.92899308852843	3.80440409220605	4.11840598085323	4.0455167342437	3.74688979246401	3.61530011187545	4.43880053993868	0.107216583677179	0.825893996964943	0.933190075561039
Merged-chr11-101278988-4	chr11	101278871	101279071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026618)	promoter-TSS (NM_026618)	-23.0	NM_026618	52469.0	Mm.52	NM_026618	ENSMUSG00000017188	Coa3	1810033A19Rik|Ccdc56|D11Ertd99e|HSPC009	cytochrome C oxidase assembly factor 3	protein-coding	6.50444567688495	6.320220256188	6.01286936097035	6.11460628797821	6.08875912683092	5.94636321806411	6.16774165291971	6.03071520271957	-0.278643033162639	0.252544012217065	0.563825160206146
Merged-chr12-55552808-4	chr12	55552697	55552897	+	970.37854	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44-int|LTR|ERVK	-12408.0	NM_001277340	79459.0	Mm.392781	NM_001277340	ENSMUSG00000063129	Aldoart2	4933425L11Rik|Aldo1-ps1|Aldoa-ps1	aldolase 1 A, retrogene 2	protein-coding	4.6931109820942	4.87101639103838	4.73121225199429	4.48511481565721	4.64491857706244	4.52699124757697	4.63374313398822	4.72808405638968	-0.115642193336541	0.743147641614657	0.898799547518055
Merged-chr2-38536542-4	chr2	38536444	38536644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159631, intron 1 of 9)	intron (NM_001159631, intron 1 of 9)	24668.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	6.07742170384683	6.37861649495973	6.22079711746944	6.26800418206254	6.17320650943801	6.21128365601794	6.20796779810812	6.11644801058492	-0.104720262400904	0.641808630528307	0.84891099922649
Merged-chr9-69439905-4	chr9	69439802	69440002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13781.0	NM_007585	12306.0	Mm.238343	NM_007585	ENSMUSG00000032231	Anxa2	AW215814|Cal1h	annexin A2	protein-coding	6.31592011394643	6.28002013222955	6.60721523475024	6.42315112290699	6.15488977557822	5.69344961458794	6.49967441242124	6.15839381545653	-0.377479536779467	0.143320718100217	0.421529085312812
Merged-chr15-99664682-4	chr15	99664584	99664784	+	892.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5693.0	NM_009597	11419.0	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding	4.31288104990834	4.76443622571419	4.57156648468254	4.76286744361706	4.26670299609849	4.44067902918172	4.62536441323397	4.40229845882162	-0.442118923171622	0.245566642108505	0.556697497249548
Merged-chr3-97824126-4	chr3	97823996	97824196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 4 of 46)	intron (NM_001039376, intron 4 of 46)	-56082.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	6.48423743731538	6.91645404799637	6.45121488721209	6.28790466025569	6.48039939130921	6.78908188383494	6.5946962827268	6.01844377235946	-0.0786666720763391	0.766842991777551	0.908757742622047
Merged-chr9-40730887-3	chr9	40730759	40730959	+	943.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	44895.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	3.72423145167153	3.75127215188321	4.29741656055144	4.02238008456656	3.46348578403032	3.48749183392686	3.29151655391824	3.43484950290885	-1.75776883658766	0.000900525835592368	0.0123909778564912
Merged-chr4-141731977-4	chr4	141731888	141732088	+	834.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8569.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	3.6781353213959	3.34758900948046	3.57675947358165	3.48733122379491	3.58922543985133	3.63849818520956	3.45319544051543	3.62662995129162	0.182353054824666	0.708517614326561	0.882900028609472
Merged-chr13-5845361-4	chr13	5845247	5845447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12745.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	5.80886037433974	5.723029772512	6.00677009143332	5.76748262200495	5.64203031953494	5.93621746512298	5.63067225149516	5.91906518851617	-0.0693503396238857	0.788270659735066	0.918062656084859
Merged-chr9-21265213-4	chr9	21265138	21265338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153583)	promoter-TSS (NM_153583)	-47.0	NM_153583	235040.0	Mm.440165	NM_153583	ENSMUSG00000002820	Atg4d	9830134P12Rik|APG4-D|Apg4d|Atg4dl|Autl4	autophagy related 4D, cysteine peptidase	protein-coding	7.62351284165479	7.85435514466193	7.74873630123878	7.69322006159077	7.78838580345983	7.62534126455407	7.65488542260865	7.65382653090304	-0.0599575512623925	0.719720734669358	0.888022825078143
Merged-chr4-8690237-4	chr4	8690123	8690323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277149)	promoter-TSS (NM_001277149)	-183.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	5.9882191360462	6.16291575138184	5.65472381539056	5.75167575833329	6.00091653385993	5.71904469479673	6.01970117296768	5.5949258038652	-0.0743318882147822	0.78589643660462	0.916695833425573
Merged-chr9-66136152-2	chr9	66136052	66136252	+	888.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026635, intron 3 of 4)	intron (NM_026635, intron 3 of 4)	9541.0	NM_026635	68250.0	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	3.16777947294168	3.27537553820032	3.23087061872562	3.03167172269249	3.53113666487924	3.51810354532419	3.38897349007021	3.34618118668768	1.02198542178355	0.0498875812857625	0.23139242462787
Merged-chr4-116123769-4	chr4	116123669	116123869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009015)	promoter-TSS (NM_009015)	-71.0	NR_131048	76786.0	Mm.373813	NR_131048	ENSMUSG00000028700	2510003B16Rik	-	RIKEN cDNA 2510003B16 gene	ncRNA	6.4279776790616	6.04575475623244	5.83070021369241	6.28735473454421	6.01640541945167	5.84779934079914	6.22741869000312	6.18020528854606	-0.151024146244779	0.557178933099495	0.802416576208173
Merged-chr14-55698287-3	chr14	55698159	55698359	+	919.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14829.0	NM_019984	21816.0	Mm.41964	NM_019984	ENSMUSG00000022218	Tgm1	2310004J08Rik|Tgase1	transglutaminase 1, K polypeptide	protein-coding	3.77201069645856	3.90661856711458	3.66790339240222	3.92553764314435	3.72165955491077	3.47770009654715	3.48356028846793	4.07624546201546	-0.333256859180492	0.50502438286825	0.771199059216064
Merged-chr17-63500545-4	chr17	63500477	63500677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015794)	promoter-TSS (NM_015794)	3.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	6.81390362277917	6.95562064926041	7.16096479264778	7.40364993518856	6.73832319631245	6.82589954428936	6.83587387651697	6.55942855255901	-0.521493348307297	0.018726356139584	0.122511333056935
Merged-chr2-152806710-1	chr2	152806610	152806810	+	1000.0	f0_balb.idr	intron (NM_009743, intron 2 of 2)	L2|LINE|L2	21779.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	4.87407838792752	4.62209090924563	4.77623435272186	4.70798222157705	4.02030832343886	4.41031243807441	4.31103340261748	4.7026664501369	-0.838422222235176	0.032367663757539	0.17615245344429
Merged-chr1-128633871-3	chr1	128633774	128633974	+	741.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41575.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	2.89601026708778	2.82262690922866	3.0579024469641	2.66242590236568	4.21654272928681	3.89571936131635	3.70259341960607	3.76506017046643	4.20395167314912	1.73866674683137e-11	1.5110691132199e-09
Merged-chr15-25321804-4	chr15	25321715	25321915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91949.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	6.79747719661141	6.70038237266001	6.82651808144893	7.13349977142579	6.87538413254224	6.50529684555346	6.92195547916177	6.72143783554053	-0.164573997236187	0.455986425200912	0.739398983036626
Merged-chr10-43221432-4	chr10	43221328	43221528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168289)	promoter-TSS (NM_001168289)	-58.0	NM_027772	71365.0	Mm.490430	NM_027772	ENSMUSG00000038240	Pdss2	5430420P03Rik|Gm60|Plmp|kd|mDLP1	prenyl (solanesyl) diphosphate synthase, subunit 2	protein-coding	7.5543464610107	7.49504736631667	7.20897691793049	7.66239833064904	7.66664240722723	7.53045407808836	7.72277494688927	7.43873927984693	0.127982965421832	0.497561029406845	0.767090702736496
Merged-chr9-63377850-4	chr9	63377744	63377944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011840)	promoter-TSS (NM_011840)	8.0	NM_011840	23938.0	Mm.325746	NM_011840	ENSMUSG00000058444	Map2k5	AI324775|AI428457|MEK5|Mapkk5|Prkmk5	mitogen-activated protein kinase kinase 5	protein-coding	5.9441734514451	5.77921776658151	6.08648105077422	5.79656066504167	5.69106454027398	5.83484813543352	5.42857147635186	5.87523295926405	-0.29719121707141	0.260703510994595	0.57252299176491
Merged-chr13-113756003-3	chr13	113755894	113756094	+	959.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-38514.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	4.15722854143894	4.04831140986626	4.15781523492249	4.85206043870497	4.90698767802485	4.53731066437133	4.55396327017759	4.97608431520291	0.840573142313055	0.0631791484765825	0.266696038987941
Merged-chr10-79798430-4	chr10	79798328	79798528	+	932.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023128, intron 1 of 8)	MTE2b|LTR|ERVL-MaLR	4856.0	NM_001161747	18483.0	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	4.6939422431432	4.24413675758657	4.65982516656106	4.68598424158577	4.42812753377232	4.4639222206669	4.31738509487221	4.33342657831337	-0.458811811533636	0.226595062599541	0.53520075526854
Merged-chr13-46905210-4	chr13	46905142	46905342	+	954.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010617, intron 2 of 37)	intron (NM_010617, intron 2 of 37)	24476.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	5.1866814828097	4.5708666095874	5.1875689605969	5.03601423690285	5.4461506040748	5.62023641673193	5.12957239796174	5.49577001677153	0.767375498627283	0.0184645557733386	0.121401128338303
Merged-chr7-81318960-4	chr7	81318842	81319042	+	729.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 14 of 21)	intron (NM_008803, intron 14 of 21)	26292.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	3.45831447607894	3.17884946591219	3.40192735771304	3.45534041233163	3.41707497891932	3.57423378634324	3.49904921791032	3.70803916730524	0.559777574370626	0.270668603564763	0.58243909949623
Merged-chr2-27026976-4	chr2	27026870	27027070	+	982.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177627, intron 2 of 8)	intron (NM_001177627, intron 2 of 8)	1028.0	NM_172659	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	4.36648453787824	4.88182914399566	4.45165432451802	4.16008733546174	4.43909858841727	4.25506326115462	4.43103787394585	4.07244041046792	-0.407683242079077	0.336553406463226	0.646503344271765
Merged-chr17-72788271-4	chr17	72788203	72788403	+	946.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	-48325.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	4.38132787863744	4.35995212430646	3.96493953532719	4.29391895364607	4.11815555185688	3.78083201848155	4.23835858316006	4.49228056238817	-0.198017018029743	0.652049021322404	0.854348672565858
Merged-chr11-116654487-3	chr11	116654387	116654587	+	990.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030206)	promoter-TSS (NM_030206)	-174.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	5.02286603525322	4.73649874504699	4.51223048251161	4.40135206183013	4.71756158474599	4.46201571800869	4.31331186633849	4.28031769515655	-0.474967137523381	0.237586567676099	0.547765824526837
Merged-chr16-30013275-4	chr16	30013173	30013373	+	946.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033631, intron 1 of 2)	intron (NR_033631, intron 1 of 2)	4606.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	5.55607470838782	4.75105157702499	5.99267191672915	6.41690917628449	4.80118622466648	4.94615650354287	5.52830115381385	5.05080645401221	-1.20623573052954	0.0530401418992128	0.240161848616035
Merged-chr11-90638130-4	chr11	90638053	90638253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011505)	promoter-TSS (NM_011505)	-31.0	NM_199008	69802.0	Mm.151940	NM_199008	ENSMUSG00000020544	Cox11	2010004I09Rik	cytochrome c oxidase assembly protein 11	protein-coding	6.95480846541182	6.58052488045613	6.13459359840866	6.60468528904329	6.98117963235203	7.00268260661605	6.88340452600091	6.97547575113878	0.509332332512037	0.0267516425469463	0.155428549901974
Merged-chr15-38382721-4	chr15	38382567	38382767	+	952.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie15a|DNA|hAT-Charlie	-81956.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	4.56110998749297	4.94117296145388	4.90953336941022	5.00522760718645	4.83698892655364	4.55295625298154	4.58462200493523	4.97197277472535	-0.251340076267143	0.476681557661814	0.753110052062842
Merged-chr8-124434561-4	chr8	124434453	124434653	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_171824)	promoter-TSS (NM_171824)	-617.0	NM_171824	209966.0	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	5.42127666700531	5.46404133631252	5.00849942253644	5.62335952981875	5.71956201912206	5.47555790509312	5.63455947866969	5.77550333454361	0.412455614423995	0.160808191394998	0.449125948684512
Merged-chr6-122605653-2	chr6	122605553	122605753	+	957.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008108, exon 2 of 2)	3' UTR (NM_008108, exon 2 of 2)	-3209.0	NM_001134391	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	2.90130577190221	2.74638785209743	2.69668260557687	2.51790460650726	2.88176230157654	3.19349807765986	2.95200293016646	3.18344992671896	1.55565484914234	0.0135613398077139	0.0978133902749588
Merged-chr14-43830613-4	chr14	43830511	43830711	+	788.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-10972.0	NM_007894	13586.0	Mm.86948	NM_007894	ENSMUSG00000072601	Ear1	EAR-1|ECP 1|Raf1	eosinophil-associated, ribonuclease A family, member 1	protein-coding	4.03115014617697	3.73137065693689	3.88856636029622	3.07879216164541	3.88525588127631	4.15863679426568	4.18028453678813	3.83480856002035	0.8170351910947	0.131898598698505	0.40430689275918
Merged-chr2-167939707-4	chr2	167939628	167939828	+	996.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	7401.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	6.28437938721356	6.92693830095991	6.86995451015787	5.9428406262081	6.20332251945367	6.44391493813579	6.59927783466592	5.41865173772284	-0.494438955183215	0.336394542205848	0.646407648662756
Merged-chr4-138012291-2	chr4	138012169	138012369	+	976.25	f0_balb.idr|f1_balb.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	14444.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	4.41580662748871	4.2726969345203	4.59220066525611	5.19897322218565	3.11598207000194	3.35998013791021	3.46010604774053	3.39463103996588	-5.10336389829377	4.82952752483341e-10	3.2832945529142e-08
Merged-chr7-55874937-4	chr7	55874843	55875043	+	880.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164661, exon 7 of 32)	exon (NM_001164661, exon 7 of 32)	32872.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	4.0969115946831	4.31869033346284	4.79412392211113	4.67340124521774	4.28316627320116	4.47334174709983	4.23283364074792	4.46981687544484	-0.328225114142387	0.422269896724211	0.714626353223175
Merged-chr19-9137308-2	chr19	9137208	9137408	+	774.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12B|LTR|ERVK	-1742.0	NM_025610	66514.0	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	3.78151620372659	3.21753799943807	3.07342049575536	3.29970749798333	3.11645667017352	3.6721931866139	3.53767365833287	3.27236132852019	0.159883527511135	0.786753420669285	0.917135960200115
Merged-chr2-119263117-1	chr2	119263017	119263217	+	784.0	f0_balb.idr	Intergenic	Intergenic	8109.0	NM_145530	228543.0	Mm.120274	NM_145530	ENSMUSG00000034226	Rhov	A030005A06Rik|Arhv	ras homolog family member V	protein-coding	3.07171360974371	2.91040910657394	3.12681592908492	3.22934100614996	2.67048745456022	2.78970736877574	2.74983532011816	3.07042747479947	-1.21040913176863	0.0616013907884604	0.262652773147947
Merged-chr15-83182153-3	chr15	83182058	83182258	+	895.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9950.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	4.18273211397762	4.51313381349068	3.91369672368642	3.94429221910104	4.61912953453786	4.40619301795509	4.60939751082175	4.27487749386972	0.79594418213866	0.0560136368047012	0.247716350054167
Merged-chr15-103462753-4	chr15	103462633	103462833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153505, exon 7 of 31)	exon (NM_153505, exon 7 of 31)	8908.0	NM_153505	105855.0	Mm.30805	NM_153505	ENSMUSG00000022488	Nckap1l	4930568P13Rik|AI463083|Hem1|Hemp1	NCK associated protein 1 like	protein-coding	6.28829494420883	6.32146355773382	6.25260748195149	6.43365572071548	5.93723737124827	6.16001003448647	6.12411957201045	6.00157930436646	-0.433989000669837	0.0566411477280175	0.249267976637354
Merged-chr11-106702761-4	chr11	106702650	106702850	+	754.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 2 of 14)	intron (NM_001305158, intron 2 of 14)	12531.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	3.43043067564127	3.85572607913712	3.22517440784909	3.55291954696996	3.89104226753877	3.88719182364884	3.9319134501199	3.60755987384532	0.887205157175489	0.0845720437320355	0.316446065331575
Merged-chr12-40445920-4	chr12	40445818	40446018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172575)	promoter-TSS (NM_172575)	-128.0	NM_178845	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	8.96552368399197	9.16492298233859	9.14612109900724	9.28063540371481	9.11658865733938	9.14840679356635	9.30406156381365	9.12436214009861	0.0327142103454727	0.824306274756146	0.932602688135355
Merged-chr16-91546623-4	chr16	91546528	91546728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008338)	promoter-TSS (NM_008338)	-466.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	7.17713712706172	7.2909447295269	7.56990573342075	7.41614565756754	7.68940661046802	7.62669107654348	7.94877431956922	7.73014059614515	0.502881472596683	0.00634246668370178	0.0564877923022033
Merged-chr16-8412433-3	chr16	8412316	8412516	+	760.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029070, intron 2 of 3)	intron (NM_029070, intron 2 of 3)	12720.0	NM_029070	74720.0	Mm.159318	NM_029070	ENSMUSG00000022715	Tmem114	4930511J11Rik|Cldn26	transmembrane protein 114	protein-coding	3.24930461025711	3.29371358685725	3.18673711690692	3.37725299568689	2.97800959156439	3.48250689340843	3.60491878612423	3.5236885937934	0.460448330678882	0.4178259486564	0.711477848869167
Merged-chr1-176248284-1	chr1	176248184	176248384	+	594.0	f0_balb.idr	intron (NM_001357846, intron 1 of 8)	intron (NM_001357846, intron 1 of 8)	27028.0	NM_001357846	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	2.8642509322376	2.80591752249674	2.74912116045297	2.91156772594137	2.63708043582843	2.50531627592387	2.54675084568959	2.55257649936657	-1.4244634036432	0.0389869972193155	0.19838829532983
Merged-chr1-171294813-4	chr1	171294693	171294893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001360931, exon 2 of 7)	5' UTR (NM_001360931, exon 2 of 7)	209.0	NM_001360932	66155.0	Mm.2815	NM_025388	ENSMUSG00000062963	Ufc1	1110021H02Rik|AA062310|ESTM29	ubiquitin-fold modifier conjugating enzyme 1	protein-coding	4.88531737498326	5.11558613687555	5.0667179905428	4.9385164020982	5.21142003076436	5.10043066152313	5.04210603425704	5.41347905856159	0.379974933422744	0.214693031443495	0.520615790042468
Merged-chr2-45081620-4	chr2	45081521	45081721	+	912.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	28656.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	4.55379259663122	4.60604051437137	4.34842369265366	4.5733132476909	4.35572232854371	4.38297592892018	4.13894361257082	4.43210516269343	-0.459046079434506	0.222082552813869	0.530088701113617
Merged-chr4-140983039-2	chr4	140982939	140983139	+	823.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3834.0	NM_029097	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	2.89675530743418	2.86193662064742	3.02233466151578	2.58467431823477	3.03508544500607	3.19356641703912	2.95041406669234	3.13476014685579	1.04350909214919	0.0895574687892035	0.326714389310366
Merged-chr18-66468052-4	chr18	66467965	66468165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9461.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	7.7402514267467	7.94308597096517	7.94045140110401	8.04019707450779	8.06453494864556	8.00712287539296	8.13343397262824	7.94918145733487	0.146746571324866	0.370705735826751	0.67489992935098
Merged-chr10-43841242-4	chr10	43841130	43841330	+	979.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	15323.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	5.20566680291066	5.33344794232446	5.61775213268646	5.19662435892031	5.4138615485246	5.01536411336637	5.56650802836071	5.17019384953843	-0.0450523441424246	0.885193053607151	0.956936716928815
Merged-chr4-105207120-4	chr4	105207019	105207219	+	957.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 2 of 5)	intron (NM_080555, intron 2 of 5)	49772.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.7317868774899	4.6732924877988	5.02824584501294	4.77825038042606	5.29348221698843	5.13381426425061	5.1573674734855	4.84831941097654	0.628611838005113	0.0530279721317993	0.24015257545138
Merged-chr14-70241625-3	chr14	70241548	70241748	+	687.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360229, intron 6 of 12)	RLTR12B|LTR|ERVK	-33977.0	NM_011366	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	3.31615220644606	2.97888304812469	2.92471916642374	3.48474412392336	2.9705858638026	3.54177193147475	3.50925053317032	3.42308507033186	0.616427892884102	0.331485860707986	0.642595786244724
Merged-chr6-92943604-3	chr6	92943513	92943713	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015530, intron 1 of 2)	CpG	3031.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	5.42053608733463	5.27439065792104	5.8649112653273	6.05650871631356	3.41285642799684	3.78002780314178	3.70486547918893	3.79506292665201	-7.03075286434957	5.90393582491255e-13	6.59711535449687e-11
Merged-chr16-97961542-4	chr16	97961420	97961620	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175428, intron 1 of 2)	intron (NM_175428, intron 1 of 2)	1102.0	NM_001081685	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	4.57266823533272	4.63780700113295	4.70046174426108	4.79894580795083	5.00929659487887	5.18994326178589	4.71800919829484	4.91891544018271	0.565334291643839	0.0938331071402689	0.335137073266958
Merged-chr6-34865466-3	chr6	34865346	34865546	+	849.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	2300.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	3.23558772476276	3.3977563452038	3.29346218901715	2.85182213704788	3.50476693363791	3.22457061525008	3.16456756467929	3.23430495490058	0.336705164084011	0.565978841350832	0.807783748011785
Merged-chr9-107909047-3	chr9	107908958	107909158	+	650.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_109782, intron 1 of 18)	intron (NR_109782, intron 1 of 18)	2169.0	NM_009074	19882.0	Mm.3901	NM_009074	ENSMUSG00000032584	Mst1r	CD136|CDw136|Fv-2|Fv2|PTK8|Ron|STK	macrophage stimulating 1 receptor (c-met-related tyrosine kinase)	protein-coding	2.90651329881867	2.88118370731598	2.8367034172885	2.82905671751346	3.39972153824824	3.26847817790811	3.30025313004941	3.03551079361765	1.62906121633115	0.00450496480967297	0.0439874672456367
Merged-chr10-19012838-5	chr10	19012827	19013027	+	879.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166402)	promoter-TSS (NM_001166402)	-964.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	3.35469584848612	3.23986841089799	3.35512892447749	3.17488115550591	3.74843856208702	3.34576676305379	3.55379508861341	3.410217818101	0.892596789614294	0.0833510967410058	0.31382426421201
Merged-chr9-69667424-4	chr9	69667331	69667531	+	849.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93509.0	NM_022378	64290.0	Mm.440890	NM_022378	ENSMUSG00000059246	Foxb1	C43|Fkh5|Foxb1a|Foxb1b|Hfh-e5.1|Mf3|Twh	forkhead box B1	protein-coding	5.14720466227831	4.85198152325751	5.26096407364672	5.36538800929102	3.99277304260901	4.69409816500027	4.78881335786489	4.95376617774048	-1.06474274761063	0.00888518347400597	0.0724857850425525
Merged-chr1-93235779-4	chr1	93235690	93235890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172463)	promoter-TSS (NM_172463)	-107.0	NM_172463	208777.0	Mm.271897	NM_172463	ENSMUSG00000047793	Sned1	6720455I24Rik|AI197264|AI642697|D430044C15Rik|SST3|Snep	sushi, nidogen and EGF-like domains 1	protein-coding	6.67149502603577	6.58921730144347	6.82585844587537	6.92906590468576	6.55885700925271	6.10969353963902	6.53087135911041	6.52702533883667	-0.457943111129477	0.0424185326200149	0.209093402587261
Merged-chr15-99946516-2	chr15	99946416	99946616	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14858.0	NM_028180	72277.0	Mm.272766	NM_028180	ENSMUSG00000045350	1700030F18Rik	FAM186A	RIKEN cDNA 1700030F18 gene	protein-coding	3.01196017474887	3.005285282168	2.95225244767428	2.65285107966561	3.0843016238016	2.93060672080656	3.00091413757405	2.95077444151161	0.400842996773445	0.5112140773862	0.775237968566043
Merged-chr5-36574772-4	chr5	36574671	36574871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	7626.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	6.20721671710063	6.3597923595547	6.14831598372824	6.39418935787417	6.01330708664408	6.00258281514683	6.43848244196777	6.24231391551957	-0.164631211395528	0.491361872814277	0.762962820807111
Merged-chr11-107131306-6	chr11	107131277	107131477	+	854.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_176850, exon 1 of 28)	exon (NM_176850, exon 1 of 28)	545.0	NM_176850	207165.0	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	3.60023194205855	3.73392771714046	3.94005262402361	3.60188159162768	3.7142265060929	3.4036575664467	3.34705589464864	3.93750105793702	-0.291060780567604	0.574258131056655	0.81217452532351
Merged-chr11-93820901-4	chr11	93820823	93821023	+	830.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64843.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	3.99618282967597	3.65364987071038	3.89554031950637	4.06389311635011	4.16608507114065	4.21488887183594	3.9798206052713	4.13246695867469	0.543027602315076	0.210185022734085	0.514610612726658
Merged-chr13-35081306-4	chr13	35081195	35081395	+	913.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	86509.0	NR_153831	75197.0	Mm.234091	NR_153831	ENSMUSG00000113906	4930529N20Rik	-	RIKEN cDNA 4930529N20 gene	ncRNA	5.16530473789304	4.82259334587173	4.60035772507556	4.32150925451853	4.61513437385724	4.36618639965675	4.41093807634463	4.2337341025448	-0.734822311585918	0.0782953288470785	0.302797240532801
Merged-chr16-93144226-4	chr16	93144106	93144306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	208983.0	NR_040486	69857.0	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	6.27505497261666	6.38764163941799	5.97889935085451	6.18911581898362	6.61712965112211	6.50715141315427	6.16639509364132	6.34513095241612	0.314115634892231	0.18499862773924	0.482739251761869
Merged-chr13-43806865-1	chr13	43806765	43806965	+	725.333313	f0_balb.idr	Intergenic	Intergenic	21753.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	2.74067310118662	2.63629351926858	2.74106903279465	2.85586460973742	2.22417840258155	2.37269306355952	2.34413322544118	2.42248332893326	-2.73206893279185	0.00132890769000714	0.0169486329451744
Merged-chr11-96311668-4	chr11	96311567	96311767	+	995.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4757.0	NR_131758	75395.0	Mm.440014	NR_131758	ENSMUSG00000085645	Hoxb5os	0610040B09Rik|AV302770|Hoxb5/6as	homeobox B5 and homeobox B6, opposite strand	ncRNA	5.27054052939338	5.43743795083728	4.64198792091543	4.65339240446839	5.2688367629001	5.52823177721879	5.18546816503517	5.04442387643637	0.417878644970022	0.25424282876297	0.565594146409534
Merged-chr16-38441809-2	chr16	38441712	38441912	+	917.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-8667.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	3.4086454355715	3.23503749981394	4.28911638379598	3.54221284384092	3.15187192030354	3.76178792976719	3.51519495626491	3.58373580319224	-0.495626337934707	0.415132047958539	0.709504359241972
Merged-chr11-48837738-4	chr11	48837657	48837857	+	808.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347446, exon 1 of 7)	exon (NM_001347446, exon 1 of 7)	286.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	3.5608416175042	3.68182169057935	3.50696269929674	3.48513179092841	3.46127760596927	3.7310542673374	3.1861065633261	3.61140292809331	-0.1590414269466	0.75772940530824	0.904818503228345
Merged-chr13-111944315-4	chr13	111944223	111944423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76387.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	6.67743317708937	6.01790136704878	6.48789586358445	6.66854630873579	6.0678417751172	5.99218643817862	6.06969337583262	6.17993838515042	-0.627299926315685	0.0130471016883559	0.0952296606927282
Merged-chr7-27605758-3	chr7	27605666	27605866	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007434)	promoter-TSS (NM_007434)	-31.0	NM_007434	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	4.17263542942036	4.27981907306365	4.28143175154568	3.72168446812161	4.63896792391128	5.10150391583461	5.30466506335254	5.0747582865505	2.06162080145365	2.51462029808426e-07	9.91624145137615e-06
Merged-chr19-32470227-6	chr19	32470120	32470320	+	938.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15549.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	3.85064345088435	3.94354941155388	4.05799166968945	4.24756951015863	4.33747788309999	4.31885239352167	4.08763927496377	4.00669093652167	0.387573312725667	0.367940043447922	0.672424883243802
Merged-chr7-31158755-4	chr7	31158668	31158868	+	962.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-3590.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	5.90059061946948	6.3818623558637	6.13721264442185	5.47718553067917	5.53432775580818	5.67665913199758	5.24582707754639	5.19579767375779	-0.961065296470501	0.00319736223965625	0.0335324954849701
Merged-chr2-129546972-4	chr2	129546855	129547055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-10353.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	7.80801395495985	7.89237529778111	8.03613500846666	7.53474421095187	7.64947376656324	7.9248866989387	7.58531555769189	7.42897972703927	-0.214868135932655	0.279924756410051	0.591994778721935
Merged-chr13-19841319-4	chr13	19841275	19841475	+	856.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17118.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	3.58082782126031	3.66178638533984	3.52748045243978	3.50833641279489	3.78805253342835	3.46408973825071	3.33996986433201	3.57932253750163	-0.0131640728823354	0.979051036665053	0.99259163825749
Merged-chr17-88440593-4	chr17	88440514	88440714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355743)	promoter-TSS (NM_001355743)	-90.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	7.71839298665599	7.5977802414797	7.326772809917	7.54903214887764	7.83911234869046	7.77048632298074	8.0046760679187	7.66532732831987	0.355277197647929	0.048461144287189	0.227234241713954
Merged-chr1-93803879-4	chr1	93803782	93803982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025454)	promoter-TSS (NM_025454)	-83.0	NM_025454	66262.0	Mm.64065	NM_025454	ENSMUSG00000026283	Ing5	1700001C14Rik|1700027H23Rik|1810018M11Rik|AI225768	inhibitor of growth family, member 5	protein-coding	8.6173567821907	8.62109049187209	8.55799022277586	8.77691428052961	8.65973935217301	8.65651617409267	8.92596814827878	8.41142248775026	0.0337623250279686	0.840516300250508	0.939305852792169
Merged-chr13-45442613-4	chr13	45442513	45442713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52871.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	6.06819485786189	5.79801883934505	5.9915467874069	5.95756626731836	5.3697729606091	5.43025899381273	5.50958554789873	5.58965865909619	-0.806875095672751	0.00191333414660831	0.0225815306286574
Merged-chr18-53167096-4	chr18	53166978	53167178	+	890.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-9214.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	4.43332022124288	3.85351373469078	4.4744970840626	4.32204828024356	4.27060895646821	4.12489572168092	4.49225063738361	4.84644886657263	0.397172964976074	0.364881066862886	0.669636959088136
Merged-chr3-54111343-3	chr3	54111252	54111452	+	661.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44705.0	NM_001253683	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	3.17642223952406	3.08482015943889	3.67429175431322	3.56509190325296	3.382791337194	3.35535562095642	3.74485885433517	3.30320921929811	0.184657191537093	0.747967491026951	0.900777917633449
Merged-chr6-52411463-4	chr6	52411369	52411569	+	930.604126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80982.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	4.26958577978601	5.03910120511511	5.0347308808148	4.69632081983496	4.60465642959651	4.6837341735435	4.44364341146167	4.21476086315149	-0.634426380855117	0.118073308360856	0.380134255210221
Merged-chr2-6454902-4	chr2	6454808	6455008	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102172.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	5.22128990109119	4.98442407232192	5.22217827192002	5.53066073596717	5.49263628692653	4.89382601377284	5.82362495971715	5.63391814601243	0.421016293292832	0.219356354997511	0.526898155856389
Merged-chr3-8968816-4	chr3	8968712	8968912	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-4666.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	5.4156606808025	4.93498759287135	5.498765705434	5.6602643682856	5.59696480113478	5.12396592541549	5.17582699077117	5.59658347975691	-0.0249101757388202	0.939974754440896	0.978363933407335
Merged-chr1-82724945-4	chr1	82724863	82725063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310699)	promoter-TSS (NM_001310699)	73.0	NM_001310695	75734.0	Mm.396863	NM_029409	ENSMUSG00000026150	Mff	5230400G24Rik|AI314724	mitochondrial fission factor	protein-coding	7.03225566134223	7.16928674032939	7.47957657444308	6.89852570005529	6.894553191932	7.29462457789743	6.94730984112871	7.19183787608133	-0.0918285583305946	0.676247510771945	0.867087377177171
Merged-chr10-39444191-4	chr10	39444108	39444308	+	847.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	74409.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	4.24684926668865	4.18413126733353	3.95529816755006	4.15690449965124	4.08467269982963	4.13258758133788	4.49860342304962	4.24484405420896	0.26153562235495	0.521181779788149	0.781250328647867
Merged-chr6-5496284-6	chr6	5496195	5496395	+	852.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013743)	promoter-TSS (NM_013743)	-17.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	4.40378250906417	4.05761962510299	4.62948976836057	4.5993260277592	3.82558834760499	4.09482204080056	4.30006446662492	4.51899706241861	-0.58010070597728	0.191755964186214	0.491174881537907
Merged-chr10-62947051-4	chr10	62946956	62947156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152862)	promoter-TSS (NR_152862)	27.0	NM_177372	327762.0	Mm.21492	NM_177372	ENSMUSG00000036875	Dna2	Dna2l|E130315B21Rik	DNA replication helicase/nuclease 2	protein-coding	5.38862680788717	5.46128465916751	5.50478483167018	5.74768664104672	5.47924098969494	5.67871825527356	5.5820381389928	5.22561460284574	-0.0857552536700169	0.764952606595028	0.907929991409496
Merged-chr15-13393458-4	chr15	13393366	13393566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-219791.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	7.30838910158188	7.05910233689288	7.52049881124581	7.77956891371302	7.20499011377792	7.3317160408469	7.31413706418971	7.12536964806183	-0.283567724754578	0.191125496852856	0.490471832472923
Merged-chr8-109780742-4	chr8	109780638	109780838	+	815.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301211, intron 1 of 22)	intron (NM_001301211, intron 1 of 22)	2155.0	NM_001301211	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	4.12940687889009	3.96275022671241	4.337335912929	4.26008524886152	3.94202148089591	4.00371957186237	3.91986609165126	4.03414933928835	-0.556294642672993	0.186081325472461	0.484014101364226
Merged-chr12-16875475-4	chr12	16875372	16875572	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19506.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	5.72934578877932	6.36128145358773	5.44773533191169	5.55234257611966	6.00464748695154	5.88130756726472	6.06983244717887	5.27594554752111	0.0345576609208129	0.918617707696865	0.970054173425813
Merged-chr3-9886255-4	chr3	9886161	9886361	+	895.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52582.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.12339354034465	4.3139455366319	4.22076382580628	4.15950025440719	4.48376250637292	4.24950406455132	4.59532987040958	4.17079059875274	0.45242935093255	0.247151602942843	0.558168726560377
Merged-chr11-98438977-4	chr11	98438856	98439056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025559)	promoter-TSS (NM_025559)	32.0	NM_025559	103742.0	Mm.259614	NM_025559	ENSMUSG00000002580	Mien1	1810046J19Rik|AI463380|Rdx12	migration and invasion enhancer 1	protein-coding	6.42162531319886	6.79202136631783	6.40487706765728	6.56276665649756	6.38279897319299	6.68447482479984	6.42477687788471	6.50390780483264	-0.0906537550765064	0.682901994112477	0.870102587289573
Merged-chr8-68876188-2	chr8	68876084	68876284	+	889.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4371.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	3.54275012353783	3.21697321809981	3.27128477312838	3.31561289441898	3.4366935229524	3.32071335536996	3.31811037715772	3.49125953748054	0.199912869416587	0.699866854350172	0.878944237004995
Merged-chr5-122372474-4	chr5	122372370	122372570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026883)	promoter-TSS (NM_026883)	-38.0	NM_024216	68080.0	Mm.266328	NM_024216	ENSMUSG00000029464	Gpn3	A930018B01Rik|Atpbd1c|D5Ertd708e	GPN-loop GTPase 3	protein-coding	6.90952546281144	7.6819056018625	6.85468534213464	6.95121040071511	7.30223296378674	7.14176779093185	6.88928126122802	7.03586265552056	-0.060741018029273	0.808534777290067	0.926115942723596
Merged-chr17-70680062-3	chr17	70679963	70680163	+	962.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360665, intron 9 of 14)	(CA)n|Simple_repeat|Simple_repeat	118316.0	NM_001128181	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	4.01684491057606	4.36171705362789	4.1081539092798	4.25956600284962	3.76878958234679	3.75704285407871	3.74384327553643	3.75607098355641	-1.24789673846031	0.00504025791183604	0.0478246055203505
Merged-chr6-94284792-3	chr6	94284693	94284893	+	850.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286784)	promoter-TSS (NM_001286784)	-876.0	NM_001286785	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	3.35201761566345	3.4449776489148	3.60365612872028	3.99603310250998	2.6564142412683	3.08381620605237	2.80859274536966	2.96883563830119	-3.60025779987334	7.32803164828536e-06	0.00020889145562407
Merged-chr4-141782959-4	chr4	141782882	141783082	+	918.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172338, exon 4 of 15)	exon (NM_172338, exon 4 of 15)	7662.0	NM_172338	214063.0	Mm.39102	NM_172338	ENSMUSG00000040697	Dnajc16	2900037O03Rik|4732437J24Rik|D030060M24|mKIAA0962	DnaJ heat shock protein family (Hsp40) member C16	protein-coding	4.19770761582597	4.55866820002298	4.34488770663595	4.63991360487912	4.59479658781341	4.60675124625701	4.45632650002672	4.55451783267518	0.202016118752368	0.590958217253873	0.821398456276379
Merged-chr17-85189797-4	chr17	85189696	85189896	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028576, intron 3 of 10)	intron (NM_028576, intron 3 of 10)	99096.0	NM_028576	73582.0	Mm.260753	NM_028576	ENSMUSG00000071037	Camkmt	1700106N22Rik|AI480743|AV099781|CLNMT|CaM KMT	calmodulin-lysine N-methyltransferase	protein-coding	4.55500169769798	4.74938524674253	4.42399557497429	4.5008557235011	5.00088427601932	4.45775755443806	4.61501326163182	4.74587684063958	0.371764909213973	0.309182429800628	0.62160479524288
Merged-chr5-122851067-2	chr5	122850977	122851177	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030564, intron 1 of 5)	intron (NM_030564, intron 1 of 5)	889.0	NM_030564	80751.0	Mm.388529	NM_030564	ENSMUSG00000029474	Rnf34	AW061037|AW536122|BC004042|C88279|RIFF	ring finger protein 34	protein-coding	2.7314320665279	2.58062438458028	2.73180446552575	2.34762180093963	2.6978122067801	2.57439010666479	2.46343222064978	2.66976685035725	0.038243187247708	0.95637069047694	0.984660360711923
Merged-chr9-49109287-3	chr9	49109178	49109378	+	931.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359460, intron 5 of 12)	intron (NM_001359460, intron 5 of 12)	6499.0	NM_030709	80893.0	Mm.72799	NM_030709	ENSMUSG00000032268	Tmprss5	spinesin	transmembrane protease, serine 5 (spinesin)	protein-coding	3.29825554703133	3.59379601350003	3.62111715725148	3.79776320074145	3.02490382455513	3.14000219975247	3.50763294536938	3.23468257291558	-1.30085195635309	0.0241212136383383	0.144924779738607
Merged-chr6-72735375-4	chr6	72735256	72735456	+	990.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	53689.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	5.78669655936002	5.51515965883671	5.71120242134387	6.15804299542922	5.93556218377376	5.4254820166549	6.1908096882653	6.23572318587101	0.247775647572646	0.421058331214971	0.713685549305864
Merged-chr7-128392073-3	chr7	128391976	128392176	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 3 of 4)	intron (NM_026418, intron 3 of 4)	26096.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	5.36389388200985	5.06415586017719	4.94145729091211	5.40588738002724	5.28764799596912	5.08071949486229	5.0964049046099	5.41516982964305	0.0159378516780112	0.95963153332188	0.985551429297447
Merged-chr4-86666041-7	chr4	86665967	86666167	+	830.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007408, intron 3 of 7)	MTC|LTR|ERVL-MaLR	3992.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	3.57957581352224	3.59002962818041	3.68676425639675	3.75690942774028	3.32907475419985	3.3821801316727	3.72098511246117	3.99946184292743	-0.0774684456923015	0.881973012402869	0.955526196981006
Merged-chr2-68985463-4	chr2	68985357	68985557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 3 of 10)	intron (NM_001347161, intron 3 of 10)	124016.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	5.27886482747199	5.36413996975984	5.5757324019375	5.94230194298149	5.58302609943055	5.69629813226023	5.28652666152704	5.64855390520105	-0.0466751389638191	0.880140729895227	0.955094857884414
Merged-chr17-56033070-4	chr17	56032969	56033169	+	892.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	3568.0	NM_013664	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	4.55321045147932	4.17356747012839	4.59046505605717	4.6630349092387	4.20424795316201	4.18796749602661	4.29034321411895	4.21371049200184	-0.696856432449865	0.0775973360865763	0.301273581077489
Merged-chr7-31149970-4	chr7	31149871	31150071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153431, intron 1 of 18)	intron (NR_153431, intron 1 of 18)	1200.0	NM_027898	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	5.70666613587347	5.9967898478533	5.40697530599976	5.67529460886003	5.52102523443831	5.70013884905044	5.46881541055293	5.46338861673035	-0.298481490293707	0.285843889122708	0.597485194899797
Merged-chr9-20952856-5	chr9	20952712	20952912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199433)	promoter-TSS (NM_001199433)	167.0	NM_010066	13433.0	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	6.07800915599621	6.39239623000343	6.62909812855123	6.08448987351108	6.18299093117001	6.21220492478022	5.93600513333625	6.15813823837199	-0.271711678675415	0.281764187909742	0.593925998911027
Merged-chr13-37657514-4	chr13	37657410	37657610	+	925.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168528.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.56453938651832	4.4669602365259	4.74298589020075	4.72235418978373	4.40806619953178	3.93433220199696	4.24695870424227	4.44234401915031	-0.814392776450347	0.0404762641031796	0.203281482638347
Merged-chr12-59013452-4	chr12	59013353	59013553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025656)	promoter-TSS (NM_025656)	62.0	NM_025656	66603.0	Mm.35353	NM_025656	ENSMUSG00000060121	Gemin2	Sip1|gemin-2	gem nuclear organelle associated protein 2	protein-coding	7.12780855763262	7.09885548981643	7.26958292000627	7.28869294087417	7.0519024394842	6.82537999056704	7.01076648329651	6.89917677100014	-0.34066754885248	0.0720051611968106	0.288340667725895
Merged-chr1-74307653-4	chr1	74307551	74307751	+	953.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039509, intron 2 of 9)	B1_Mur2|SINE|Alu	-3315.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	4.85031798604561	5.00220633530386	4.52535940817407	4.76802556525449	4.50387870077811	4.74933780543758	4.82777327040897	5.29612579162641	0.148698627633501	0.691909650849222	0.87467626526963
Merged-chr17-65558405-4	chr17	65558309	65558509	+	941.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17627.0	NM_001289486	381107.0	Mm.141275	NM_001008973	ENSMUSG00000045036	Tmem232	E130009J12Rik|Gm940|Tes13-L|Tes13-S	transmembrane protein 232	protein-coding	4.57472286456103	4.56517950207508	4.28666523149268	4.95691009513552	5.20334261486816	4.75210806628235	4.51110525149274	5.09664890409953	0.59199831820304	0.140759471331995	0.41732231461186
Merged-chr11-114260504-2	chr11	114260404	114260604	+	779.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	62246.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	3.09303486333957	2.81596356913462	3.02966598054511	2.94468491913801	3.18873223603561	3.38290038575982	3.49773232342452	3.09185786434148	1.26957997833141	0.0263087070988138	0.153720855572687
Merged-chr9-107551612-4	chr9	107551527	107551727	+	869.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243748)	promoter-TSS (NM_001243748)	72.0	NM_001243748	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	4.647614843543	4.30807483863245	4.15323649881451	4.18695359797599	4.24035410814303	4.4692239626312	4.27711048530539	4.42195349548655	0.0523014132983614	0.895028724495641	0.96073210268323
Merged-chr16-78376087-7	chr16	78375941	78376141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001297747, intron 1 of 4)	CpG	716.0	NR_002700	654432.0	Mm.458574	NR_002700	ENSMUSG00000044645	Gm7334	EG654432	B-cell translocation gene 3 pseudogene	pseudo	5.44381855960497	5.6190445813204	5.58102812635987	5.41023067910963	5.53993762356253	5.33425625451782	5.60316655590418	5.46938982998432	-0.0249740358740773	0.926894728059974	0.973189560110644
Merged-chr11-50321484-4	chr11	50321387	50321587	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110500, intron 1 of 14)	intron (NM_001110500, intron 1 of 14)	4186.0	NM_001110499	12330.0	Mm.248827	NM_007597	ENSMUSG00000020368	Canx	1110069N15Rik|AI988026|Cnx|D11Ertd153e	calnexin	protein-coding	5.17987643120502	4.99460935371082	4.45404766189317	4.84771115886553	4.89267650573329	5.02417162341911	5.06492518704732	5.14767477505336	0.271080854665076	0.42890520985595	0.719857371117313
Merged-chr10-17721814-4	chr10	17721778	17721978	+	859.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1350.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	4.14329849394303	3.8911514387099	4.23144247621433	3.93572895715807	4.08011102244191	4.22267660359995	3.98366354601992	4.27025792434439	0.246317579693392	0.554933523296153	0.801177563425742
Merged-chr2-144290533-4	chr2	144290436	144290636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B2|LTR|ERVL	19632.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	7.15154133304544	7.1913979825439	7.16453571282749	7.41309509907222	7.40238448861354	7.43189971099416	7.61502597358038	7.22779690931305	0.242317319700006	0.203203792753427	0.505958749235532
Merged-chr1-177139820-4	chr1	177139714	177139914	+	942.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 1 of 12)	RMER19B|LTR|ERVK	108953.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	4.96542624539904	4.61454125256316	4.49192910336117	5.36518127752025	5.06302735539002	4.62488388311537	4.64859731989439	4.9294469797664	-0.178549506473302	0.656284119769075	0.856578187032112
Merged-chr11-106193696-4	chr11	106193579	106193779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028126)	promoter-TSS (NM_028126)	-76.0	NM_001252449	72149.0	Mm.403722	NM_028126	ENSMUSG00000069631	Strada	2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik	STE20-related kinase adaptor alpha	protein-coding	7.90372286173182	8.14973397772206	7.79136386822167	7.59236217068866	7.97458042740888	8.09697119746242	8.0606143500701	8.01711497141073	0.216946893149353	0.237740216720076	0.547926505214579
Merged-chr7-47007316-4	chr7	47007178	47007378	+	903.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175318, intron 1 of 5)	intron (NM_175318, intron 1 of 5)	1136.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	3.41777473389807	3.62685156709916	3.53239802351856	3.70337630003389	3.39335451416718	3.33726177483133	3.67141821321325	3.82049452164977	-0.0447167053433291	0.930750390016353	0.975109021223914
Merged-chr5-147913969-3	chr5	147913918	147914118	+	839.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19203.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	3.69128109754624	3.26049501602109	3.59351350870806	3.39336525054306	3.75303603684711	3.42217410735157	3.29759485497892	3.59142057973339	0.154430484283788	0.769778305745992	0.909864663312752
Merged-chr12-112840863-4	chr12	112840762	112840962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	-11341.0	NM_001359234	71963.0	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	5.44318073561165	5.4409531389315	5.30084873774196	5.13367744532985	5.08598958519166	5.20998785332359	5.41674793999041	5.49327454142294	-0.0347653184926827	0.90793824549075	0.965929300548068
Merged-chr6-97452405-4	chr6	97452286	97452486	+	982.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	6900.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	5.7034202369271	5.93416020682741	5.65649741215756	5.6097199182663	5.48863854295621	5.22193408679037	5.09216531197205	5.28709786781057	-0.756206540344023	0.0089059844283492	0.0726055509821862
Merged-chr2-72170726-4	chr2	72170628	72170828	+	983.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 3 of 26)	ORR1B2|LTR|ERVL-MaLR	-114909.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	5.32968562048771	5.7272396019026	5.65059301503157	5.35227430160346	5.19494571590197	4.95560539849737	5.49904992001175	5.32689987379929	-0.464623054331742	0.130181984040235	0.401586493035134
Merged-chr10-67979536-4	chr10	67979429	67979629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359318)	promoter-TSS (NM_001359318)	-41.0	NM_001359318	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	7.54527093950861	7.52113693896721	7.07420966959005	7.07129840513624	6.91509050970258	7.10988903501609	7.18749395862971	6.94083512574066	-0.378390072806785	0.0776397788249412	0.30130973321959
Merged-chr7-81274493-3	chr7	81274389	81274589	+	739.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 1 of 21)	L1M3|LINE|L1	60685.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	3.22330060242468	3.46284794346359	3.38785852492086	3.25818209362613	2.9440386081976	3.07588684546377	3.09112863463195	3.3335558989652	-0.857913384230009	0.13343071123601	0.406761085916653
Merged-chr11-45955225-4	chr11	45955132	45955332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290737)	promoter-TSS (NM_001290737)	-44.0	NM_001290737	66628.0	Mm.269083	NM_001080969	ENSMUSG00000011254	Thg1l	-	tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)	protein-coding	7.42908088388506	7.68142242930648	7.26474704023182	7.06391889228606	7.4053760291036	7.89212739355083	7.59806081549247	7.22605073385688	0.235166408052979	0.300166752710035	0.612251288689364
Merged-chr1-77868102-4	chr1	77868013	77868213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2D|LTR|ERVL	329023.0	NM_001159520	18505.0	Mm.1371	NM_008781	ENSMUSG00000004872	Pax3	Pax-3|Sp|Splchl2|splotch	paired box 3	protein-coding	5.92855067743395	6.04647860379328	5.95300368997587	6.63750223463131	6.04704586086251	6.17486495734119	6.19154698007632	5.90154858226723	-0.184753158019344	0.50983715013418	0.774279342623072
Merged-chr17-45430605-4	chr17	45430506	45430706	+	824.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152810, intron 1 of 15)	RLTR13B1|LTR|ERVK	3101.0	NM_152810	71702.0	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	3.79254095791571	4.14563183162834	3.49698606289097	3.70392104497528	3.8658760027604	3.7419831858408	4.01622499833458	4.11679016250791	0.38257068134355	0.423619335943813	0.715521717879136
Merged-chr5-63971264-3	chr5	63971169	63971369	+	848.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2372.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	3.53948747397893	3.40521856983542	3.25693098250667	3.43425856388401	3.39473880610535	3.49109888388456	3.52530606034486	3.37590020235762	0.109247707697377	0.828414781341808	0.934169961374777
Merged-chr14-50904065-3	chr14	50903914	50904114	+	597.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10759.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	2.23982849307216	2.19522356392099	2.32416330716276	2.0671876771803	2.6871160950129	2.86058050735349	3.00225367327265	2.85978792086802	4.34909631094562	2.23726486006412e-07	8.91636480820291e-06
Merged-chr17-73009044-4	chr17	73008961	73009161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90756.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	5.89989589097924	5.75773758677283	5.76322851743526	5.88027612496457	5.51561976655733	5.83769980907111	5.84901824789161	5.49020604019492	-0.254689934430505	0.330885260894488	0.642104407905452
Merged-chr4-33189228-6	chr4	33189161	33189361	+	742.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001034867, exon 1 of 7)	exon (NM_001034867, exon 1 of 7)	476.0	NM_001034867	242377.0	Mm.372465	NM_001034867	ENSMUSG00000054659	Pm20d2	Acy1l2|Gm424	peptidase M20 domain containing 2	protein-coding	3.45891368194488	3.5064828178697	4.2463229974422	3.81603565840239	3.66761699100841	3.69913598780789	3.67754622888195	3.63595398549587	-0.371362277826062	0.471531987349416	0.749935186197728
Merged-chr5-137746540-4	chr5	137746493	137746693	+	921.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023910, intron 1 of 4)	intron (NM_023910, intron 1 of 4)	624.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	3.89051374418925	3.91081908292594	4.32341471325042	3.50620896618575	4.11847422445255	3.90594702328181	3.65396865839834	4.12295057562826	0.0980622827493504	0.844320779712565	0.940926379407879
Merged-chr3-121600583-4	chr3	121600474	121600674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42911.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	6.62750249434563	6.8033435784126	6.52578252375448	6.59776896086125	7.24754188417052	7.31287002093981	7.0787860433827	7.02878891937696	0.740881344683452	0.00017933858269069	0.0033259877481346
Merged-chr7-101538722-4	chr7	101538630	101538830	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17072.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	5.15885457536166	5.40710469278098	4.91314572540633	5.02780817586856	5.05087400440614	5.51003855595557	4.92783157598153	5.21863120779472	0.0949939221225917	0.771888880753947	0.910590162639594
Merged-chr5-112344294-4	chr5	112344188	112344388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001359853, exon 2 of 14)	5' UTR (NM_001359853, exon 2 of 14)	1193.0	NM_138646	192232.0	Mm.238043	NM_138646	ENSMUSG00000042328	Hps4	2010205O06Rik|AU040608|BLOC-3|C130020P05Rik|le|mKIAA1667	HPS4, biogenesis of lysosomal organelles complex 3 subunit 2	protein-coding	5.95961676177565	6.16903751411751	5.60999445855429	6.15985577854296	6.63823390813201	6.29258935695558	6.24095502767896	6.48800474845411	0.640694659917874	0.0122714470403085	0.0913384219263953
Merged-chr4-137807680-3	chr4	137807529	137807729	+	912.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1O|LTR|ERVL-MaLR	-11245.0	NM_007431	11647.0	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	3.57477384830343	3.63923968417588	3.78610058262042	3.8587728927513	3.83865356488119	3.43711305769838	3.56198902250473	3.92155034592548	-0.0487447838783932	0.92115171164966	0.970782613022078
Merged-chr2-32395923-8	chr2	32395784	32395984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133783)	promoter-TSS (NM_133783)	-6.0	NM_133783	96979.0	Mm.28048	NM_133783	ENSMUSG00000026820	Ptges2	0610038H10Rik|C79137|Gbf1|Mpges2|Pges2	prostaglandin E synthase 2	protein-coding	5.38253572080813	5.64762293211918	5.31974016414082	4.98992472707418	5.59083267592678	5.86059625744008	5.79564682152402	5.94642601024229	0.782498842029517	0.00826905939811179	0.0687062880126077
Merged-chr7-80091464-5	chr7	80091295	80091495	+	922.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001146000, exon 6 of 6)	3' UTR (NM_001146000, exon 6 of 6)	-16138.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	3.59291748969888	3.6870011902939	3.47735731792704	3.49301099497716	4.03889071323463	3.81900103177228	3.33958468084018	3.74788985862711	0.627164539937648	0.214092274879	0.519761043473936
Merged-chr8-117069876-4	chr8	117069767	117069967	+	931.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 5 of 42)	intron (NM_029686, intron 5 of 42)	12582.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	4.22050936053482	3.87824307857457	3.81368049584135	4.35355497902081	4.06058831419436	4.10525324848792	4.24468347818013	4.49189201302405	0.331889988586976	0.458836533366108	0.741615730170609
Merged-chr2-80617578-1	chr2	80617478	80617678	+	551.0	f0_balb.idr	exon (NM_024438, exon 1 of 4)	exon (NM_024438, exon 1 of 4)	364.0	NM_024438	68082.0	Mm.306818	NM_024438	ENSMUSG00000027001	Dusp19	5930436K22Rik|C79103|SKRP1|TS-DSP1	dual specificity phosphatase 19	protein-coding	3.77602513867625	3.82902893092361	3.87200677444801	3.46160580105607	3.32377744726174	3.79309639751368	3.71045630321096	3.72388304549447	-0.283725880227942	0.574976209961142	0.812689522207036
Merged-chr1-153480573-4	chr1	153480478	153480678	+	774.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007842, intron 4 of 27)	B3|SINE|B2	7082.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	3.55068569476056	3.10740813850872	3.26538618281059	3.36327363629209	3.66815382103414	3.55972689060226	3.63370748437223	3.38553798331714	0.796786595116655	0.125735890578073	0.393811271471296
Merged-chr1-165187498-5	chr1	165187424	165187624	+	819.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151712, intron 3 of 8)	intron (NR_151712, intron 3 of 8)	6909.0	NM_145512	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	3.39645215869821	3.27826669786803	3.39689703404201	3.15982965017495	3.50029831894811	3.78235609097906	3.73763169358684	3.39509773840595	1.04759658702833	0.0395461814859636	0.200274574643416
Merged-chr8-123032908-4	chr8	123032811	123033011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	9373.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	6.56821119984803	6.73942445850818	5.91753383541506	6.20233474452744	6.54991149468888	6.21949456190407	6.73405742974876	6.40013407656341	0.147383910130729	0.583223525452214	0.816949076417655
Merged-chr10-44553833-4	chr10	44553730	44553930	+	983.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-95082.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	5.35694147072792	5.52911990898489	5.0364776913954	5.33273197474372	4.85038420431383	5.38189186914482	5.04799521897702	5.46273053525604	-0.238785508655704	0.464475191068887	0.745464276626538
Merged-chr7-123170547-7	chr7	123170430	123170630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144925, exon 6 of 24)	exon (NM_144925, exon 6 of 24)	-44336.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	5.06156681488876	5.6975523397859	5.81556294093163	5.24372107711453	4.82817470679438	5.50172938008711	5.10865462147878	5.19782617132976	-0.565970244821456	0.104589623315169	0.355647598530454
Merged-chr8-127780287-2	chr8	127780187	127780387	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	480635.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	2.84188518609141	3.20840764659424	3.11375804710099	2.97224191998814	3.6795084514264	3.16142549362917	3.1026503438744	3.17215887504268	1.02311540436206	0.088553160304704	0.324735981315225
Merged-chr12-102296135-3	chr12	102296040	102296240	+	799.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	12499.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	4.11015529161193	4.84126176933488	4.61035616766624	4.19810610052013	4.1293643536502	4.18513399388762	4.09340130367638	4.00272681438984	-0.896699501102822	0.0411051559040994	0.205090697609554
Merged-chr11-32342928-4	chr11	32342836	32343036	+	856.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4875.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	3.92796255446323	4.43776583504749	4.04301481849415	4.01683248288773	4.58284663317003	4.55353424993056	4.36074351988769	4.74403392563241	1.05618138160422	0.00830208223085483	0.068897506250439
Merged-chr9-72449608-3	chr9	72449502	72449702	+	991.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008613, intron 7 of 9)	intron (NM_008613, intron 7 of 9)	11073.0	NM_008613	17427.0	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	3.99982746700736	3.84722607981915	4.12444355269292	3.84948022567559	5.45403547622089	4.84295311234366	5.48529317631663	5.20906781538788	2.88048766168547	4.09347860161464e-14	5.74693714761989e-12
Merged-chr16-11253532-4	chr16	11253443	11253643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_035466)	TTS (NR_035466)	782.0	NM_001130008	14852.0	Mm.325827	NM_146066	ENSMUSG00000062203	Gspt1	AI314175|AI326449|AV307676|C79774|G1st|Gst-1	G1 to S phase transition 1	protein-coding	5.42101116174484	5.25354703513322	5.91605296507459	5.31581901553801	5.76776403204194	5.59871802009554	5.56322821580087	5.82742611227053	0.351521309570544	0.232527905473011	0.542125901855992
Merged-chr8-57801395-4	chr8	57801295	57801495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175032, intron 10 of 11)	intron (NM_175032, intron 10 of 11)	-148340.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	7.45775516269455	7.47201840391038	7.58109372329232	7.86893907389946	7.90143565025067	7.74948688957882	7.66288773645422	7.67885589897743	0.179417664562486	0.339078402200834	0.648361627676377
Merged-chr9-124012877-4	chr9	124012768	124012968	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-9103.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	4.44265572282482	5.05824375126121	4.73173694212077	4.83917557430134	4.58585553497455	4.6201455078347	4.51208662393741	4.52965815131322	-0.497805968149545	0.169983465552393	0.462916673472618
Merged-chr6-145865539-4	chr6	145865414	145865614	+	981.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024469)	promoter-TSS (NM_024469)	-94.0	NM_001271768	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	6.69910667515977	6.55423176151119	6.50235967587271	7.04088498206312	5.32627245092806	5.36559123878093	5.63621056007398	5.85250035613021	-1.82937861753551	1.86251485172879e-11	1.60878940814164e-09
Merged-chr5-75979326-1	chr5	75979226	75979426	+	746.25	f0_balb.idr	promoter-TSS (NM_010612)	promoter-TSS (NM_010612)	-898.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	3.30886006750839	3.32768902835483	3.15603781391683	3.32714519023753	2.64393964477677	2.65152094463982	2.62263772823014	2.84962752843782	-3.1299870104628	5.65349017401837e-05	0.00125713769789582
Merged-chr10-61068590-2	chr10	61068490	61068690	+	952.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20741.0	NM_025273	13180.0	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	3.44703562402595	3.26853384194188	3.22396829753211	3.08735128975476	3.68119891154389	3.27300270940805	3.27132398895297	3.16004693495939	0.421429970120374	0.451870059545835	0.736313789854241
Merged-chr10-59237346-2	chr10	59237246	59237446	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15424.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	3.06238927144903	2.89784271106313	2.95100125639262	2.83791329704835	2.73137246266806	2.72465968220315	2.81904600639043	2.94943282493467	-0.583304278176061	0.3476717105466	0.655546119710951
Merged-chr6-99436484-4	chr6	99436371	99436571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	-1126.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	5.66091342853904	5.80747685450819	5.68657640136321	6.10942371440142	5.14833694014895	5.3643829608433	5.44682734662474	5.31737301574076	-0.914741207535039	0.00138930134813787	0.0175615486874632
Merged-chr1-97667482-3	chr1	97667380	97667580	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31_Mm|LTR|ERVK	-5462.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	4.02319914095227	4.25304855830154	3.92615227185482	3.94896951417508	3.68169488322772	3.99605359492295	4.09600087807368	3.92387550501627	-0.319893078152385	0.470953700834927	0.749631322324999
Merged-chr17-46111031-4	chr17	46110921	46111121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026768)	promoter-TSS (NM_026768)	17.0	NM_026768	68565.0	Mm.287443	NM_026768	ENSMUSG00000023967	Mrps18a	1110004O20Rik|C79712	mitochondrial ribosomal protein S18A	protein-coding	5.71617309888911	5.89059289630608	5.55243523594118	5.56738164500595	6.15432483056757	6.16724568102511	5.87791363253119	5.63347885347678	0.481984051906446	0.0743988225306463	0.29400862999152
Merged-chr7-73618422-4	chr7	73618309	73618509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-60014.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	8.49710379783892	8.74321043551421	8.30455129876348	8.54010074741707	8.69495856623754	8.74430084584883	8.6396966417233	8.66073751257087	0.19062665399061	0.229545048667003	0.538611736247523
Merged-chr16-59499379-1	chr16	59499279	59499479	+	770.0	f0_balb.idr	intron (NM_174848, intron 16 of 18)	intron (NM_174848, intron 16 of 18)	27604.0	NM_025910	67014.0	Mm.289150	NM_025910	ENSMUSG00000022724	Riox2	1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204|Mina	ribosomal oxygenase 2	protein-coding	2.52359272985093	2.4895644609487	2.64021497299119	2.69518836093958	2.34943671482043	2.27544992273978	2.17307790817098	2.25318955386155	-2.07540560746664	0.0116608206954469	0.0880558762319569
Merged-chr12-111696522-4	chr12	111696416	111696616	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16437.0	NM_001324481	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	5.59274663808187	4.82546316708811	5.15824323138618	5.21346759461483	5.50834565307702	5.63802242730835	5.19987131798975	5.72886185717733	0.549940020384802	0.0877301971345197	0.323083129018021
Merged-chr6-48676130-3	chr6	48676039	48676239	+	747.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174960)	promoter-TSS (NM_174960)	4.0	NM_174960	317758.0	Mm.116971	NM_174960	ENSMUSG00000051124	Gimap9	A630002K24|BB145400	GTPase, IMAP family member 9	protein-coding	2.69004931282557	2.89511432841251	2.772487159689	2.47118859508643	3.60686970667304	3.17936997703218	3.43924749337861	3.67572186316139	3.55885251362939	6.91856803013799e-08	3.06826637892332e-06
Merged-chr9-107644788-4	chr9	107644678	107644878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9436.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	5.68836987711465	5.95487445583615	5.09969264021865	5.73495424712416	6.00406952626517	5.94182248935534	6.11637579196565	5.98811751394199	0.561194338304056	0.0492220410655279	0.229471814317737
Merged-chr16-32332197-4	chr16	32332075	32332275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177633)	promoter-TSS (NM_177633)	-77.0	NM_177633	224111.0	Mm.31275	NM_177633	ENSMUSG00000053774	Ubxn7	A630090P18|AI196514|Ubxd7|mKIAA0794	UBX domain protein 7	protein-coding	6.53834361513674	6.8820529691666	5.99548926186325	6.43317990910138	6.88658831238424	6.69948916457206	6.64484883408008	6.45014809868229	0.262791162333921	0.306541337407459	0.619004960575493
Merged-chr2-166275581-4	chr2	166275483	166275683	+	991.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033467, intron 1 of 2)	intron (NR_033467, intron 1 of 2)	1675.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	5.61054562588422	5.36900816234662	5.77628311371056	6.32055644901236	5.04467007057259	5.11624495913712	5.103172543286	5.26336608369248	-1.23907256843746	0.000214986959254231	0.00386330643089041
Merged-chr17-34836619-3	chr17	34836513	34836713	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163770)	promoter-TSS (NM_001163770)	290.0	NM_019442	54402.0	Mm.440064	NM_019442	ENSMUSG00000061207	Stk19	G11|RP1	serine/threonine kinase 19	protein-coding	4.9231859912204	4.79186745003978	5.11461070777425	4.16814627434726	4.71907905252194	5.16283955280154	4.89985537099577	4.77574062197112	0.233764897040005	0.558630506228979	0.803303359218534
Merged-chr5-140736019-2	chr5	140735919	140736119	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	11892.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	3.62821761961888	3.79837243915275	3.62870348250069	3.53503237428168	3.86058671569308	3.80078146833356	3.5590829151874	3.78204363219496	0.347992109969628	0.45531465002888	0.738890340972614
Merged-chr13-75794368-4	chr13	75794259	75794459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45526.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	7.16524360602797	7.08198426820504	6.66258008022111	6.27608771163781	6.87590217258467	7.34244289525602	6.89807868349864	6.54145102732038	0.15144596474376	0.587678782159891	0.819326924567384
Merged-chr2-5708236-3	chr2	5708174	5708374	+	741.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	6488.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	3.31889436037232	3.31280228860152	3.43468904317317	3.53160440946225	3.53402249159533	3.08658585619754	3.57503023877262	3.63601636984311	0.232187065390279	0.668298372623193	0.862910602346375
Merged-chr13-5511968-4	chr13	5511887	5512087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	346105.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	6.27160478757318	6.00845413155475	5.94734883453711	6.30226463308322	5.97094954567491	6.27533919645895	6.24055176347775	5.7427788456422	-0.124761174085686	0.628127895817699	0.841427212108636
Merged-chr13-34276852-4	chr13	34276777	34276977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	68305.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	5.5990182917983	5.23432843410457	6.13159456001596	5.78470108117499	5.23057149123975	5.57730734954771	5.51789858740446	5.74562160606364	-0.342357331812844	0.281921925658522	0.594029802150557
Merged-chr11-110095825-3	chr11	110095754	110095954	+	872.455566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153145)	promoter-TSS (NM_153145)	83.0	NM_153145	217258.0	Mm.344148	NM_153145	ENSMUSG00000041828	Abca8a	-	ATP-binding cassette, sub-family A (ABC1), member 8a	protein-coding	4.74428357404777	4.6836903033787	4.74511664924081	4.26922734381057	3.83320889662522	4.07048910301142	3.86959882533621	3.94159588685725	-1.76347643861001	6.20647791699619e-05	0.00135804147449699
Merged-chr15-100683174-4	chr15	100682987	100683187	+	982.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 4 of 7)	B3A|SINE|B2	4833.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	3.97219193597902	3.85422022958079	3.58919893266069	3.73156426439724	3.75549817188632	4.18939667881436	3.90756157202919	4.22700823772471	0.655772518559379	0.151906636834158	0.435691763840051
Merged-chr10-80931499-2	chr10	80931399	80931599	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008655, intron 3 of 3)	intron (NM_008655, intron 3 of 3)	1408.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	3.56461680508889	3.57566288946837	3.67224927630248	3.28902062250821	3.60129086450666	3.56467493364998	3.70667105101125	3.90376733257692	0.570149295199111	0.246724283201565	0.557995637343335
Merged-chr17-86963762-2	chr17	86963662	86963862	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 1 of 4)	intron (NM_145491, intron 1 of 4)	651.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	4.30388588303865	4.26679388052895	4.02095980164044	3.85217276383288	4.12076292682503	4.24873069407359	4.47886179684387	4.38382363700501	0.500689516858873	0.229993427198134	0.539130648922641
Merged-chr19-53547762-3	chr19	53547675	53547875	+	836.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18457.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	3.5170323088258	3.53003129563967	3.98823359024072	4.30789750141316	3.18875431803892	3.1617828172062	3.25786016150258	3.39697964233606	-2.20125582023222	0.000243936809515866	0.00427862178977631
Merged-chr16-64748439-3	chr16	64748329	64748529	+	661.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22510.0	NM_026273	67609.0	Mm.212157	NM_026273	ENSMUSG00000059920	4930453N24Rik	AI649104|din	RIKEN cDNA 4930453N24 gene	protein-coding	3.241778496871	3.51790870370768	3.55083733955492	3.68879149345565	3.91634780920029	3.60967442287288	3.48163595000577	3.70400402863053	0.541172323280911	0.295326444709387	0.607364100260525
Merged-chr16-91891189-3	chr16	91891093	91891293	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 30 of 38)	intron (NM_010587, intron 30 of 38)	40437.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	3.18015829564417	3.08081091176283	3.09685099689235	2.58161716651561	4.58169778812197	4.1632518217851	4.42716850584172	4.31024990738714	5.6564516582378	2.89228832440761e-17	6.72778400794148e-15
Merged-chr8-120697341-3	chr8	120697231	120697431	+	850.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29011.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	3.67376472527179	3.27000369615744	4.35209245511894	3.40548167210719	3.44654610351475	3.62586743018472	3.60543184794407	3.50394541463912	-0.598819283950628	0.301113621302263	0.613071122730944
Merged-chr12-84276537-3	chr12	84276450	84276650	+	707.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-8746.0	NM_029880	77219.0	Mm.246127	NM_029880	ENSMUSG00000072946	Ptgr2	1810016I24Rik|9130222H03Rik|9630002F03Rik|AI838763|B830026H24Rik|PGR-2|PRG-2|Zadh1	prostaglandin reductase 2	protein-coding	3.22957465462712	3.16699843300106	3.16871562714655	3.17972540161083	3.19607350684199	3.00333314170861	2.95757800917405	3.94128904052512	0.54672337953454	0.388735834193497	0.689075530869355
Merged-chr18-46198229-3	chr18	46198159	46198359	+	911.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178872, intron 1 of 9)	CpG	559.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	4.49804504557381	4.62018032656697	4.62195303960937	4.52024832846472	4.77576629498319	4.79354790517833	4.56109689055388	4.45215640353874	0.207747990334442	0.554785809403389	0.801044670619386
Merged-chr11-97703282-4	chr11	97703183	97703383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011971)	promoter-TSS (NM_011971)	-151.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	8.29928182703529	8.55878317023022	7.99306840754014	7.89490358900366	8.29803006597928	8.34015449403437	7.77557012963813	8.00159050531416	-0.108705766878932	0.616348733787943	0.834943450262974
Merged-chr4-33247777-4	chr4	33247652	33247852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033225, intron 1 of 1)	CpG	1035.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	9.36300814055148	9.49080891892843	9.28931499466834	9.43959469615229	9.43075795462141	9.58928112619062	9.69281066638944	9.53903477286447	0.202717235325929	0.150102926193339	0.432592767977799
Merged-chr4-126321721-4	chr4	126321623	126321823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133883)	promoter-TSS (NM_133883)	-20.0	NM_133883	100206.0	Mm.11285	NM_133883	ENSMUSG00000042558	Adprhl2	AI836109|Arh3	ADP-ribosylhydrolase like 2	protein-coding	6.43293435517203	6.87344663731083	6.2559234962262	6.62898899409381	6.84617047391833	7.20270726672778	6.77950937874561	6.7817281864114	0.474343540941946	0.0432200764997937	0.211579217687676
Merged-chr8-27042764-7	chr8	27042672	27042872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039077, intron 1 of 4)	CpG	217.0	NM_054057	114863.0	Mm.277501	NM_054057	ENSMUSG00000031485	Plpbp	1700024N20Rik|2200002F22Rik|Prosc	pyridoxal phosphate binding protein	protein-coding	6.92227599426229	7.06418333135346	7.13670835124271	6.93955831915144	7.16774285143821	7.4022893699506	7.27240039391735	7.20990784284075	0.338864822770421	0.0681022490305769	0.278573069579187
Merged-chr4-156235992-4	chr4	156235848	156236048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021303)	promoter-TSS (NM_021303)	-62.0	NM_021303	57741.0	Mm.423051	NM_021303	ENSMUSG00000095567	Noc2l	AA410003|AF155546|NIR	NOC2 like nucleolar associated transcriptional repressor	protein-coding	6.69470092856927	6.60415622445595	6.63394385556703	6.70918194525461	6.76339892329462	6.84192097004344	6.9905505623851	6.84709485353777	0.276805822294413	0.15948479342194	0.447041258562947
Merged-chr7-122208540-4	chr7	122208462	122208662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10934.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	7.03161451727441	6.71539076017511	6.94576715956456	7.0084574991122	6.9398536106436	6.92827300242993	7.10069745964347	6.86112591069592	0.0368907062300834	0.851751081632188	0.944100387750672
Merged-chr5-24454113-2	chr5	24454013	24454213	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359881, intron 1 of 15)	intron (NM_001359881, intron 1 of 15)	1936.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	4.33998645776217	3.69283479838385	3.98880240321018	4.04614462948029	4.34319528200625	4.05993950660448	4.15814520144363	3.9864847404426	0.302451921893905	0.495183757720371	0.765566565829241
Merged-chr7-100226046-4	chr7	100225965	100226165	+	807.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1542.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	4.63023693487889	4.83963172468877	4.34734328856079	4.01916823989548	4.23624416402042	4.47740853395553	4.49583482802153	4.34462536263606	-0.225776420945552	0.595774984483035	0.824150570800077
Merged-chr17-26508368-6	chr17	26508283	26508483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013642)	promoter-TSS (NM_013642)	89.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	8.00008693132935	8.31781765610385	8.40101453406475	8.34243791898983	8.24652129666953	8.47055960726766	8.52180189911561	8.39554771168035	0.167083225282309	0.320433681229132	0.632312633312311
Merged-chr9-103366739-4	chr9	103366599	103366799	+	838.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134426)	promoter-TSS (NM_001134426)	-919.0	NM_175565	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	3.55324206551904	3.74269785311864	3.2204293190921	2.69856021724818	3.62823652300683	3.39907421977011	3.00753469679901	3.1542124427416	-0.182320536624364	0.790844712026131	0.918885370783943
Merged-chr2-117312631-4	chr2	117312521	117312721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 2 of 16)	intron (NM_011246, intron 2 of 16)	30256.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	5.90447006124888	5.71712302747069	5.24893857505837	5.00303357468771	5.72582302040507	5.52588670595982	5.70074976201198	5.6281244816234	0.248434517548901	0.444405910625116	0.730803662815541
Merged-chr2-101696415-4	chr2	101696330	101696530	+	923.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303273, intron 6 of 6)	intron (NM_001303273, intron 6 of 6)	18010.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	4.83075487588931	4.80025209852691	4.63873364003983	5.19050397218355	4.46567469310602	4.63991394004115	4.84340451445554	4.82832254726222	-0.42518187444518	0.243279202660211	0.554283485360621
Merged-chr6-32395587-4	chr6	32395479	32395679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-115562.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	6.06264185676272	6.50354029847466	6.52521056456526	6.65062020015358	6.05317584657103	5.91683111791087	6.23688445320876	6.35580034801533	-0.474986720589982	0.0577027733525807	0.252131719119911
Merged-chr16-93142314-4	chr16	93142195	93142395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	210894.0	NR_040486	69857.0	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	6.40936065339389	6.7155203936504	5.93228709416814	5.32901717702037	6.92668520549064	7.13772470494239	6.23110432768335	5.95292755990741	0.647193864574615	0.255074830016756	0.566612718090149
Merged-chr1-135313793-4	chr1	135313692	135313892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360858)	promoter-TSS (NM_001360858)	-55.0	NM_001360858	21854.0	Mm.2368	NM_011590	ENSMUSG00000062580	Timm17a	Tim17a|mTim17a	translocase of inner mitochondrial membrane 17a	protein-coding	7.58903162093075	7.7870839607303	7.45019153966616	7.66873576200803	7.88286122155833	7.56607702075563	7.90488696370411	7.53084726963718	0.13816253571351	0.460661175564616	0.742698629991932
Merged-chr8-120471332-4	chr8	120471207	120471407	+	770.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17559.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	3.0221213040537	3.37717421738496	3.28937294593823	3.44112385010614	3.48052344284304	3.4018826481132	3.63906569138802	3.45740782334	0.665690037943359	0.218111418520076	0.525141615884151
Merged-chr2-154436337-4	chr2	154436261	154436461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009823)	promoter-TSS (NM_009823)	-123.0	NM_172860	12396.0	Mm.29914	NM_009823	ENSMUSG00000038533	Cbfa2t2	A430091M07|C330013D05Rik|Cbfa2t2h|MTGR1	core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	protein-coding	8.66864724792241	8.64333180711135	8.48962684728106	8.33392356938533	8.51005332740155	8.72110872330174	8.68507276320813	8.24949287094327	0.0214498600726938	0.903190969739343	0.964174003555599
Merged-chr4-98383225-4	chr4	98383131	98383331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053157)	promoter-TSS (NM_053157)	34.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	7.07807225529363	6.91962683866236	6.99327815506628	7.12788766459071	7.0382411302274	7.10503397866025	7.29952244777852	6.9231110463061	0.082208169321027	0.672241311258219	0.865098520982242
Merged-chr13-44657803-1	chr13	44657703	44657903	+	549.0	f0_c57.idr	Intergenic	Intergenic	-72971.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	2.2239729561939	2.50033349360171	2.3059366312523	2.26071740036377	2.40200985693715	2.70251620476167	2.58252122461655	3.0249525743329	1.97341462219007	0.00883256845274835	0.0721602150878911
Merged-chr17-27203607-5	chr17	27203434	27203634	+	897.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146075, intron 1 of 8)	intron (NM_146075, intron 1 of 8)	904.0	NM_146075	224640.0	Mm.29689	NM_146075	ENSMUSG00000044857	Lemd2	BC026588|Lem2|NET25	LEM domain containing 2	protein-coding	2.72869407563269	2.78905299179935	3.01045913907503	2.38047337740796	2.71997824480975	2.63177369865	2.36619742532126	2.7276272264009	-0.610459621532735	0.413988846020087	0.708838812152508
Merged-chr12-85712824-4	chr12	85712683	85712883	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26063.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	5.13985491104217	4.95834143744511	4.67669475326056	4.60838567013641	4.96836873178177	5.01324090404848	4.85225632334327	5.22364751863753	0.338600821900746	0.321377342037445	0.633111551190032
Merged-chr11-97229673-3	chr11	97229579	97229779	+	853.666626	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008942, intron 14 of 22)	A-rich|Low_complexity|Low_complexity	-41787.0	NM_008379	16211.0	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	2.97772140732162	2.67226076602759	2.7388215325134	2.42112658924634	4.02808233625098	3.64718958090101	3.29165354447969	3.56824050323271	4.5206806530641	6.08003532987487e-10	4.06357591310013e-08
Merged-chr1-149961656-4	chr1	149961573	149961773	+	986.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008869)	promoter-TSS (NM_008869)	-383.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	5.13697721787397	4.70121129206706	4.78389629528312	4.36041005290996	4.74777134554007	4.42512007088562	5.02556896640507	4.88740241336494	0.0622123019808818	0.873370477086881	0.952540293712625
Merged-chr4-59575726-4	chr4	59575623	59575823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5840.0	NM_001301367	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	5.4492690991368	5.64258673958025	5.63677767001849	5.60558607093559	5.38498955171551	5.56654917436252	5.36494570435934	5.44641726529676	-0.261032693431749	0.331329282182234	0.642467227210669
Merged-chr12-108627585-4	chr12	108627473	108627673	+	958.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163395, intron 1 of 12)	intron (NM_001163395, intron 1 of 12)	-8180.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	5.04647483496882	4.72856858261082	5.16415500870631	4.78277964556108	4.57126527727214	4.74706321775603	4.71397558252354	4.73306482871629	-0.503976710215661	0.144592263601932	0.423763030877504
Merged-chr12-75413936-3	chr12	75413843	75414043	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175644, intron 2 of 2)	intron (NM_175644, intron 2 of 2)	2838.0	NM_175644	217674.0	Mm.252250	NM_175644	ENSMUSG00000048982	Gphb5	OGH|Zlut1	glycoprotein hormone beta 5	protein-coding	3.47965614591538	3.35061899247335	3.30901793064172	3.29254282796596	3.3864721116777	3.22379888428075	3.56732373282406	3.72006681913429	0.448664414047923	0.388267956864267	0.688915268263078
Merged-chr2-34373211-4	chr2	34373072	34373272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1127.0	NM_016768	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	6.09022051234874	5.94704985311062	5.89427533122028	5.86271712130538	5.98628849293193	5.75316421358132	6.33070098379484	6.27461105701771	0.251991915914387	0.322955958135115	0.634440486410161
Merged-chr4-84675870-3	chr4	84675787	84675987	+	896.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172870)	promoter-TSS (NM_172870)	-801.0	NM_172870	242509.0	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	3.72620560027515	3.8773491626652	3.92151218692929	3.93209176667932	3.5826041997044	3.67463457144619	3.6588242881391	3.72463942486428	-0.649545916129858	0.156528121895722	0.442464399746187
Merged-chr10-111997210-4	chr10	111997120	111997320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028608)	promoter-TSS (NM_028608)	44.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	6.0805838406885	6.2554417370982	6.44201746565238	5.73208048695342	6.48584650870559	6.21500186069184	6.6739672621289	6.33439984243409	0.460019586007649	0.0805803587120153	0.307896356216376
Merged-chr10-98882690-4	chr10	98882582	98882782	+	905.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31960.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	4.5785112038286	4.03518896808752	4.54087673241287	4.90191791171512	4.52314690439473	4.25690320747172	4.35529201052296	4.53794423082525	-0.321398348248236	0.450593760714439	0.735357832948579
Merged-chr6-94500330-4	chr6	94500216	94500416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026255)	promoter-TSS (NM_026255)	2.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	6.56877240036651	6.2579266974053	6.02539401570574	6.47736680332591	6.40402109801761	6.59590696458695	6.69835286244014	7.06582392133473	0.514237643794794	0.0417818485441393	0.207059123965975
Merged-chr6-116461048-3	chr6	116460940	116461140	+	800.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009662, exon 1 of 14)	5' UTR (NM_009662, exon 1 of 14)	138.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	3.78972181288439	3.64707668343507	3.83978070356747	3.95847070178723	3.6535569530281	3.68696788976019	3.8235826901268	3.83751535782975	-0.216302024275668	0.637450826064477	0.846780493873723
Merged-chr14-54259205-4	chr14	54259109	54259309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134076)	promoter-TSS (NM_134076)	-23.0	NM_134076	105501.0	Mm.28771	NM_134076	ENSMUSG00000040997	Abhd4	1110035H23Rik|AI429574|Abh4	abhydrolase domain containing 4	protein-coding	7.00584614636366	6.95997314531013	7.16089789336189	7.249346970167	7.14360806332087	6.97999580256036	7.14695751010564	6.86953658106263	-0.0858049825894167	0.662668942701257	0.860135538723746
Merged-chr17-8149603-4	chr17	8149513	8149713	+	822.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1781.0	NM_026611	68195.0	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	4.10851206185094	4.45521182596983	4.32745914182896	3.73256961560502	4.20545302288748	3.84823054215642	3.71217504326804	4.51041694779506	-0.179960424671867	0.719010132531271	0.887712867262946
Merged-chr13-101867054-4	chr13	101866968	101867168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98851.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	6.82268266921064	6.90338162242912	6.9214600307477	7.10031931910616	7.19062923692575	6.97215270559201	7.01335802146839	7.38142023766739	0.276301793315789	0.171459145340444	0.464748305643088
Merged-chr6-125411234-4	chr6	125411125	125411325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30721.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	6.24708428618479	6.32652064882181	6.14829873021397	6.57723590052887	6.13175093504826	6.19464988061836	6.47423747315438	6.16451430185263	-0.161317383640396	0.502255468748381	0.769575778516236
Merged-chr19-5274312-4	chr19	5274223	5274423	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030109, exon 21 of 21)	3' UTR (NM_030109, exon 21 of 21)	-1204.0	NM_153129	107975.0	Mm.234923	NM_153129	ENSMUSG00000024855	Pacs1	AI325977	phosphofurin acidic cluster sorting protein 1	protein-coding	5.04388264249245	4.93651478744075	4.78354090271007	4.8986131926364	5.07254313217262	5.1144355205655	5.23504909040029	5.34009079575755	0.524249033269982	0.0868965404466775	0.321509972577922
Merged-chr13-76597161-4	chr13	76596940	76597140	+	890.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	212079.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	2.98389770517596	2.64923291897349	2.98426883736051	2.91107881633379	2.99243147555448	3.21446656605352	3.19678888749788	2.98276782832819	0.872429997816577	0.148002209042974	0.429496292469532
Merged-chr1-177408898-2	chr1	177408798	177408998	+	710.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33453.0	NM_001355099	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	2.81890077500439	2.72128803703584	3.20640492361465	2.44138323257353	2.48034168212405	2.72102552926467	2.74363215167292	3.10514558850752	-0.19825409410805	0.786864401463356	0.917218685117941
Merged-chr4-99185549-4	chr4	99185444	99185644	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8390.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	4.2456988224218	4.03055418069552	3.80300945000735	4.50105380558897	5.07031328927579	4.27611297394757	4.31776591272377	4.4196989167354	0.89645039297062	0.0594013910298574	0.25685226250934
Merged-chr13-83715186-4	chr13	83715049	83715249	+	855.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6232.0	NR_152244	320203.0	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik|ECONEXIN|EyeLinc1|Visc-1	RIKEN cDNA C130071C03 gene	ncRNA	4.3961167494507	4.4614383396131	4.73678695328352	4.54454151090184	4.29086001907991	4.17697850286454	4.28831173490088	4.55635606249025	-0.477127387186652	0.211213593538639	0.515787529171727
Merged-chr8-84976584-4	chr8	84976505	84976705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008416)	TTS (NM_008416)	2143.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	8.50800385146524	8.85638160679516	9.00366101835019	8.4381840127919	8.69960133862907	8.95484601953168	8.71655580569906	8.83096048717189	0.104665725134636	0.567136664003507	0.808124048747935
Merged-chr16-65458445-4	chr16	65458389	65458589	+	975.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-62140.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	6.36853046216393	6.73635780459284	6.40333764033698	5.85683764833101	6.24811280919993	6.54507362077512	5.96408533104614	5.19498415373523	-0.460604854377055	0.380106845892434	0.682564774596403
Merged-chr18-57029821-3	chr18	57029735	57029935	+	983.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54456.0	NM_029909	77422.0	Mm.256874	NM_029909	ENSMUSG00000024592	C330018D20Rik	AU018666	RIKEN cDNA C330018D20 gene	protein-coding	4.03689589664882	4.5127589004057	3.70143144206247	4.19927064107987	3.51930746100787	3.20981603582941	3.31486715686652	3.32388953243815	-2.57675995230927	1.63273484155787e-05	0.000427423439820697
Merged-chr11-101095816-2	chr11	101095716	101095916	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008949)	promoter-TSS (NM_008949)	-381.0	NM_008949	19183.0	Mm.18344	NM_008949	ENSMUSG00000019303	Psmc3ip	C79099|GT198|HOP2|Tbpip	proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein	protein-coding	3.17369386320396	3.11390956740451	2.84037009377371	3.06886829929901	3.11259401613595	3.55662503416056	3.10247791438444	3.28528181325249	0.82369195884467	0.1559752040175	0.441850702493124
Merged-chr6-59022834-4	chr6	59022738	59022938	+	889.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153574, intron 1 of 17)	intron (NM_153574, intron 1 of 17)	1664.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	4.34878146235492	4.00160830253557	4.43362503635496	4.79955636839158	4.17536299609	4.43336994504286	4.24082700262541	4.38943878144638	-0.320794198689544	0.453753633222578	0.7376390379157
Merged-chr11-63922417-4	chr11	63922322	63922522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018805)	promoter-TSS (NM_018805)	-138.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	7.26958689244308	7.43421808738523	7.33971019294337	7.52740268853933	8.1350187249163	8.15285683768497	8.40660281740166	8.36444277936494	1.11812713190051	1.41452647572012e-10	1.05872323885681e-08
Merged-chr4-133159316-4	chr4	133159210	133159410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	28677.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	6.84134637147929	7.11436428642058	6.91147481760899	6.98375242390077	6.93296033912154	7.03366168255487	7.11867249993832	7.09310580701582	0.0990846062692226	0.603736436625477	0.828322201668559
Merged-chr2-6284889-4	chr2	6284768	6284968	+	882.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 4 of 6)	intron (NR_040333, intron 4 of 6)	-37889.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	4.69269446715239	4.59273597324273	5.12435485618875	5.34758282513015	4.31287521110597	4.51514192617081	4.67135834809724	4.60901370134854	-0.978736465741613	0.0123490238368054	0.091637944920764
Merged-chr10-85002216-3	chr10	85002109	85002309	+	758.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183172, intron 9 of 9)	intron (NM_183172, intron 9 of 9)	84596.0	NM_183172	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	4.00184331701382	3.42097247191434	4.27243009760337	3.99550238129644	3.39424505632942	3.46045659150314	3.6983955781867	3.71148204789594	-1.16148549863456	0.0293386157430693	0.164795875155929
Merged-chr7-98816903-2	chr7	98816803	98817003	+	896.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18209.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	2.2270377028383	2.15931308899555	2.07684981197664	1.91827137081926	2.18620249211045	2.53390903613645	2.35328696283642	2.36140712111817	1.76501906480905	0.0259609455776274	0.152342586879969
Merged-chr2-33467715-4	chr2	33467604	33467804	+	850.1124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355611, intron 1 of 2)	intron (NM_001355611, intron 1 of 2)	828.0	NM_027947	71834.0	Mm.44186	NM_027947	ENSMUSG00000026788	Zbtb43	1700010E06Rik|Zfp297b|mKIAA0414	zinc finger and BTB domain containing 43	protein-coding	4.54684826958948	4.45389091601328	4.37790243700583	4.06402359737919	4.35885087983691	4.6394459934637	4.44498132640183	4.91916944225627	0.557198740810165	0.161081380920398	0.449667095949997
Merged-chr2-167688275-4	chr2	167688174	167688374	+	966.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009883)	promoter-TSS (NM_009883)	-641.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	4.37481514315076	4.38351498870734	4.61991581388659	4.28114678797686	4.50576980778433	4.54956756523921	4.35608736756146	4.68873505900099	0.274781125512952	0.457714349457275	0.74076646006274
Merged-chr15-33265869-3	chr15	33265762	33265962	+	912.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176073, intron 3 of 7)	L2c|LINE|L2	140077.0	NR_033608	73486.0	Mm.483393	NM_028551	ENSMUSG00000058101	1700084J12Rik	-	ribosomal protein L7-like 1 pseudogene	pseudo	3.77000872646559	3.48339640436654	3.35499793506092	3.96691820332513	3.93962787506477	3.72566287000391	4.10371083353856	3.66247140163524	0.551566928596097	0.291463699221996	0.603768651870507
Merged-chr5-19666664-4	chr5	19666562	19666762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 1 of 22)	intron (NM_001170746, intron 1 of 22)	-240856.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	6.86130223907487	6.69732512373306	6.81786717422591	7.601957437259	7.57169988314164	7.17887557340102	7.54137084029332	7.54005393592067	0.540015168891872	0.0367427082830541	0.190870619827727
Merged-chr16-22654567-4	chr16	22654474	22654674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 1 of 23)	intron (NM_001346673, intron 1 of 23)	2657.0	NM_138650	110197.0	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	6.50841628084893	6.26083447764037	6.46065292316882	6.67278889569934	6.35680424693845	6.15983813231556	6.30608275254769	6.31551865364133	-0.303563086234021	0.180255034399331	0.476611410681675
Merged-chr1-153431915-4	chr1	153431809	153432009	+	845.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033162, intron 2 of 9)	ORR1D2|LTR|ERVL-MaLR	6700.0	NM_001033162	71836.0	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	4.36504830021852	4.89928299550454	4.10925718859159	4.64076310297698	4.57792270911512	4.93309477240932	4.51912131354224	4.21529895750104	0.0877576018401892	0.836996476539272	0.938145671742126
Merged-chr9-66888194-3	chr9	66888081	66888281	+	682.011108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	31524.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	3.9154163424924	3.76292595286469	4.09782044855805	3.87590772415833	3.69071191917761	3.93494766786536	3.79896895848629	4.05220569155346	-0.124403039931958	0.781323731714056	0.914858982946737
Merged-chr19-46961912-4	chr19	46961795	46961995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164363, intron 1 of 17)	CpG	456.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	6.01442901073309	6.16618587296625	5.99402925810682	6.16627691567847	6.20285748405236	5.7689650410544	5.87430115034556	5.67185075597485	-0.286238207119977	0.26778928106967	0.579572282816166
Merged-chr2-6178617-3	chr2	6178524	6178724	+	831.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14627.0	NR_040333	320132.0	Mm.445891	NR_040333	ENSMUSG00000087125	A230108P19Rik	-	RIKEN cDNA A230108P19 gene	ncRNA	3.68761944853219	4.16378591674348	4.01615516991583	3.70757066842775	3.63520131141714	3.43668686197584	3.37888727578486	3.63159857064011	-1.16226886636765	0.0236625060431617	0.143009869814564
Merged-chr19-4097646-3	chr19	4097553	4097753	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026373, intron 1 of 3)	intron (NM_026373, intron 1 of 3)	302.0	NM_026373	52004.0	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	6.65013694447614	6.93618579758661	6.58767284531109	6.40376459238988	6.77643004479807	6.85841500724733	6.52112535776865	6.99602794115958	0.210301376521201	0.359425359128237	0.665285077035204
Merged-chr10-5823348-2	chr10	5823281	5823481	+	851.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175374, intron 1 of 6)	intron (NM_175374, intron 1 of 6)	562.0	NM_175374	108853.0	Mm.55082	NM_175374	ENSMUSG00000019774	Mtrf1l	9130004K12Rik	mitochondrial translational release factor 1-like	protein-coding	3.23277097371969	3.07489249165643	3.41348386551558	3.22190591843352	3.54262775626588	3.63850431041967	3.45432533819656	3.61831102318661	1.12471425564906	0.0279582012471226	0.159977987101765
Merged-chr11-30198126-6	chr11	30198079	30198279	+	959.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009260)	promoter-TSS (NM_009260)	78.0	NM_009260	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	4.66458095523384	4.08843735746875	4.63038198488627	4.13716316195227	4.40723310244853	4.29275066517365	3.8679260699027	4.79289026751844	-0.041286453611941	0.929006906816196	0.974317157505369
Merged-chr6-24963946-3	chr6	24963857	24964057	+	708.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7832.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	3.79474230803881	3.73125157739444	3.84296170476771	3.77442805290302	3.84713161505081	3.6415098363703	3.4531856877951	3.63857539955706	-0.373112362820104	0.431367023453167	0.721675024613162
Merged-chr7-30422251-4	chr7	30422144	30422344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360907)	promoter-TSS (NM_001360907)	-162.0	NM_001360907	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	8.34472860295224	8.90254907542581	8.05748115612693	7.37270619114477	8.86180378564787	8.77675191782483	8.43678888580956	8.47556420565068	0.456876762006606	0.264928649185136	0.576781318605745
Merged-chr10-99425472-4	chr10	99425374	99425574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	162243.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	6.66435776884697	6.78500274905392	6.56085303328009	6.50672910147118	6.25344387589372	6.33809154131683	6.32556564683765	6.0670434163152	-0.559672836819733	0.0112710677171134	0.0859238993570465
Merged-chr6-134566060-1	chr6	134565960	134566160	+	657.0	f0_balb.idr	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	853.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	3.20252216923914	3.24812032810187	3.42617822525553	3.23968945879662	3.1282981781122	3.1157137871997	3.50892617082996	3.31757931380215	-0.0138175337587	0.979818052608028	0.992761229969493
Merged-chr18-60911960-4	chr18	60911859	60912059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038499)	promoter-TSS (NM_001038499)	-281.0	NM_001038499	545260.0	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	5.6822821026247	5.43852920109474	5.53105051972045	5.38512344067196	5.42440301616129	5.50304368529087	5.70098075077126	5.38474716016522	0.00630108163956638	0.981835676533803	0.993492379943959
Merged-chr1-88588201-1	chr1	88588101	88588301	+	612.0	f0_c57.idr	Intergenic	MTB|LTR|ERVL-MaLR	36684.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	3.68277737828387	3.54347403946191	3.92967158812874	3.25885427559898	3.56933738806462	3.85820237280288	3.66814087160883	4.09449627085233	0.583614692312492	0.260527059023836	0.572324359311071
Merged-chr4-133369665-4	chr4	133369547	133369747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358455)	promoter-TSS (NM_001358455)	-88.0	NM_016981	20544.0	Mm.4312	NM_016981	ENSMUSG00000028854	Slc9a1	AW554487|Apnh|Mir5122|Nhe1|mir-5122|swe	solute carrier family 9 (sodium/hydrogen exchanger), member 1	protein-coding	6.38568934673645	6.74298818619945	6.05381470562207	6.17069039770578	6.66346721599517	6.66860322770337	6.72930585854168	6.77246268701345	0.503928747108052	0.0347310938864125	0.184473138701661
Merged-chr5-117888293-4	chr5	117888198	117888398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 2 of 27)	intron (NM_008712, intron 2 of 27)	21459.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	7.57571010378646	7.6977511489865	8.16581925168895	7.70281322321992	7.31871333575866	7.62419722704074	7.63318846728189	6.95621975117128	-0.520039750943226	0.0220429825760003	0.136707977413708
Merged-chr2-6721686-4	chr2	6721587	6721787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310447)	promoter-TSS (NM_001310447)	-25.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	5.9509733115872	6.11385068503638	6.1868178215411	6.09578138965235	6.27286829275324	6.10470551656308	6.2121568054876	6.39638025681937	0.24965221323589	0.273754347679773	0.585450852191767
Merged-chr1-139443200-2	chr1	139443100	139443300	+	622.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172643, intron 10 of 10)	B2_Mm1a|SINE|B2	-11573.0	NM_009791	12316.0	Mm.168523	NM_009791	ENSMUSG00000033952	Aspm	Calmbp1|D330028K02Rik|MCPH5|Sha1	abnormal spindle microtubule assembly	protein-coding	3.02148563330515	2.75401399978098	2.91357047743441	2.71864782482546	2.51772421087782	2.77113315273906	2.72223282679025	2.59336433749001	-1.00291482383211	0.13520733774601	0.409351973580459
Merged-chr5-135467402-4	chr5	135467273	135467473	+	791.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	MTEa|LTR|ERVL-MaLR	-72827.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	3.99723870243432	4.05141318663974	4.09557319327607	3.94862848680912	4.10178471713373	3.89883595112512	4.07774223808972	4.55913452991941	0.422137243400106	0.326176241393054	0.637721768008465
Merged-chr5-88791644-5	chr5	88791551	88791751	+	638.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26638.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	3.2280656240212	3.42431999581554	3.79174918875155	3.20488317570159	3.45695940049811	3.40489836301014	3.27935416020374	3.34917601829729	-0.170451285568017	0.756250946502772	0.904221096926321
Merged-chr9-59544923-4	chr9	59544816	59545016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	5376.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	7.53249106183422	7.63526415248203	7.85687777381496	7.68790094818738	7.6700143833822	7.53343204698862	7.65201609729364	7.4526222102592	-0.130910522751164	0.454221162665497	0.738064300669969
Merged-chr4-136132812-3	chr4	136132749	136132949	+	712.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-10973.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	3.02405574718652	3.36364947163925	3.0243624270619	2.93600777165037	3.45475845277877	3.5179065762525	3.43953624315827	3.69008954855623	1.58144363661225	0.00392946815493305	0.0395064752948267
Merged-chr8-88692090-3	chr8	88691998	88692198	+	646.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4930.0	NM_001128170	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	2.8350853661912	3.02129160093977	2.89471700214434	3.01159068731481	2.6811707269863	2.51044900382899	2.63222659513227	2.83402354956821	-1.35252176657481	0.0462022639910232	0.220743116432879
Merged-chr2-6322727-4	chr2	6322634	6322834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080548)	promoter-TSS (NM_001080548)	-23.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	6.90590892127109	6.87451210134289	6.72357295235904	6.92464139083898	6.83267879891237	7.08305208866722	7.05452069320473	6.79241801414478	0.108026779255041	0.586200467054356	0.818557203798918
Merged-chr9-41073699-4	chr9	41073592	41073792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	5814.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	5.432732047135	5.07017881713335	5.62124359716669	5.83882144779738	5.80662464932354	5.21124465333012	5.51627114318071	5.30889084806875	-0.0701561306506733	0.831946942471194	0.935667305160871
Merged-chr6-35380084-4	chr6	35379980	35380180	+	988.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49234.0	NR_040526	73409.0	Mm.69443	NR_040526	ENSMUSG00000107341	1700065J11Rik	-	RIKEN cDNA 1700065J11 gene	ncRNA	5.0676113176338	4.83855902148949	4.57939628021353	5.01072979606529	4.97521357353997	4.80238327322659	5.04355077995176	4.96773965384443	0.109930158189751	0.740623184330013	0.897985196074791
Merged-chr5-122732178-3	chr5	122732102	122732302	+	906.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145358, exon 16 of 16)	3' UTR (NM_145358, exon 16 of 16)	24658.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	3.93481527098157	3.55907485461954	4.12825703842559	3.63654161111128	3.36642001857434	3.41622454995717	3.41711182218602	3.2292441786957	-1.55674623202382	0.00422625305239089	0.041867844957012
Merged-chr15-41612421-4	chr15	41612317	41612517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 2 of 17)	MIR3|SINE|MIR	163314.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	8.83959336884431	8.63234767532821	8.8292226915452	8.93716941594266	8.79282278335315	8.89610984553664	8.83947037793907	8.57174264852308	-0.0453779840701607	0.773096964900732	0.911199828859751
Merged-chr9-106685855-4	chr9	106685731	106685931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011573)	promoter-TSS (NM_011573)	-15.0	NM_011573	21767.0	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	6.60506813348586	6.7889604018854	6.40407540949111	6.20453090150664	6.7972814840403	6.6857100507962	6.35299777236866	6.76186731112004	0.225981369411808	0.34911496831908	0.656765556493198
Merged-chr7-139979600-4	chr7	139979496	139979696	+	867.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347613)	promoter-TSS (NM_001347613)	-841.0	NM_001347613	381933.0	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	4.11097684184181	4.14962287045462	4.06243441257597	4.53875819805152	4.11133008493172	4.08067339294455	4.31254866715503	4.1564115161559	-0.21188735852194	0.617087583449948	0.835320866104708
Merged-chr2-25262520-4	chr2	25262420	25262620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175286)	promoter-TSS (NM_175286)	-78.0	NM_175286	97031.0	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	8.35316803415868	8.45234242430498	8.00307787163284	8.34902486633129	8.07604291504473	8.28798120597876	8.29418740492605	7.94050553263852	-0.187764065195894	0.294085378858025	0.606446191202461
Merged-chr2-173229737-4	chr2	173229654	173229854	+	902.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022995, intron 2 of 3)	intron (NM_022995, intron 2 of 3)	-10832.0	NM_001139519	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	3.81596451172204	3.8077699363471	3.81649381353256	3.98034398842151	3.8079781782135	3.70444473502706	4.08009618836798	4.13757868879101	0.214174946535277	0.634308512261422	0.845099589972031
Merged-chr6-124493036-4	chr6	124492889	124493089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181344)	promoter-TSS (NM_181344)	-124.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	6.40646662704559	6.5268750094007	6.12052362446341	6.05427787396177	6.48558713267797	6.43868921893392	6.19181069174015	6.36834033957691	0.146082339650178	0.542432433072968	0.793833794123973
Merged-chr2-131087288-3	chr2	131087177	131087377	+	944.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011426)	promoter-TSS (NM_011426)	-512.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	4.02521441976244	3.68997230038617	4.15110177492376	4.15406128293523	3.56838705096359	3.53748001451701	3.76940538948869	3.88435340675307	-0.956217308373807	0.0463576692569668	0.221282320192891
Merged-chr10-57792611-4	chr10	57792524	57792724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1920.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	6.54375996920978	6.42316332980915	6.7157368020859	6.37145681126336	6.30733167240457	5.83329294218878	6.14310641661057	6.0635582418557	-0.602527845065343	0.0125034622949616	0.092446654481466
Merged-chr2-69861166-4	chr2	69861053	69861253	+	981.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355265)	promoter-TSS (NM_001355265)	-409.0	NM_001110145	20823.0	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding	5.3091724860645	4.75785054112627	5.5960421895088	5.42385989224839	5.14016535026233	4.61728844724625	5.28344675158644	5.54472216221526	-0.216120388000793	0.565701087242519	0.807708329369941
Merged-chr2-52943455-2	chr2	52943346	52943546	+	627.5	f0_balb.idr|f0_c57.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	85578.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.90643619625189	3.74611295559746	3.81183481520609	3.40901851468632	3.83967379322853	3.88207603538908	3.39914990153132	3.90459375765016	0.155232728415834	0.757879866388003	0.90490952828044
Merged-chr3-16043555-3	chr3	16043461	16043661	+	816.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37229.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	3.17141026442341	3.46985068842253	3.35611268251718	3.50630683682264	3.63389402245989	3.40907535241144	3.34378746276627	3.29588210586902	0.150114756228017	0.778158316157805	0.913566660130711
Merged-chr5-92528759-4	chr5	92528658	92528858	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23101.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	5.64513703910222	5.20984566160825	5.51786698067037	5.77845207897983	5.24983789347143	5.39212509646121	5.37804520475859	5.64212053903726	-0.259080141745019	0.385765653346815	0.687199074994943
Merged-chr2-18959250-1	chr2	18959150	18959350	+	873.0	f0_balb.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	38871.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	3.30232808460608	3.03277307778831	3.08939695993691	3.39998226547428	2.89829869445323	2.93992970035601	2.95782356589221	2.75999202394405	-1.42798798197195	0.0225116944581347	0.138588470838572
Merged-chr10-119239286-8	chr10	119239212	119239412	+	938.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027994, intron 1 of 14)	CpG	743.0	NM_027994	71902.0	Mm.203965	NM_027994	ENSMUSG00000020114	Cand1	2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829	cullin associated and neddylation disassociated 1	protein-coding	4.56478630023818	4.4911287067185	5.07599865807605	4.57797480214587	4.92632150387013	5.18495411664596	4.85795698608439	4.7687883029899	0.517083810145021	0.14668092213656	0.427175702989165
Merged-chr18-60733546-4	chr18	60733460	60733660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348102)	promoter-TSS (NM_001348102)	-419.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	6.6050666290929	6.26460383889329	6.2119779378087	6.39436819312544	6.41848708847448	6.73594138404402	6.11865219630161	6.03547436983176	-0.0312884380107418	0.902482317806078	0.963822246382074
Merged-chr1-172346929-3	chr1	172346837	172347037	+	916.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	5727.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	4.42077364659944	3.85194772157225	3.95925162591783	3.95708611901752	4.23924128461466	4.02983579664598	3.9428048398157	3.85159037542933	-0.0716231622185087	0.873918070019886	0.952744110383191
Merged-chr16-94607583-3	chr16	94607487	94607687	+	846.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-3832.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	3.70057903804023	3.71579798496136	4.0032102569721	3.994028123145	3.92893782300984	3.69854693153373	3.89368039683542	4.12714354051749	0.151035388770597	0.740769797262858	0.898040260084917
Merged-chr15-83037892-4	chr15	83037803	83038003	+	957.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger16a|DNA|TcMar-Tigger	-4506.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	4.5190880369105	4.61875814909523	4.76143298629571	4.43078517869493	5.02874942552145	5.00175525087383	4.70183961744605	4.68250042793669	0.627248244934678	0.0715242876879477	0.287125783844139
Merged-chr17-7939853-4	chr17	7939746	7939946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5768.0	NM_025789	66832.0	Mm.29830	NM_025789	ENSMUSG00000073471	Rsph3a	1700012G05Rik|4930524H12Rik|R74860|Rshl2|Rshl2a	radial spoke 3A homolog (Chlamydomonas)	protein-coding	5.91821620016442	6.1713731255341	5.44182507660335	5.87566616599402	6.03352296809253	5.74247183127868	5.62070983753029	5.97961363272443	-0.0314486969753393	0.911388616675903	0.96695373445261
Merged-chr17-81480910-4	chr17	81480810	81481010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	257477.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	6.05049473220554	5.70406502987184	6.13264034813873	6.2259791731817	6.31228901335092	5.89653623509448	5.66206065038368	6.18574195443192	-0.0010369363889432	0.99702045201636	0.998845087483662
Merged-chr6-72096379-4	chr6	72096258	72096458	+	955.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1250.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	4.87884652678404	4.19602198585185	4.66949975908585	4.73884518687153	4.73314048435399	4.76400536849256	4.39818743993208	4.58791035837614	-0.0324287588083974	0.93262436171966	0.975722604390767
Merged-chr1-152571559-4	chr1	152571443	152571643	+	899.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 4 of 17)	intron (NM_016846, intron 4 of 17)	53674.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.38834263103774	4.00272866633319	4.26036532386941	4.30607732238634	4.3204269216574	4.38779877776819	3.99664492645769	4.57489429656412	0.210178898107598	0.608175109971034	0.8303806010247
Merged-chr7-35156654-4	chr7	35156532	35156732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29753.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	5.75636657187001	5.78037126324135	5.59663952247946	6.07325901572454	5.91001143464384	5.77429517878487	6.20145287838136	5.7533001647263	0.146118896217417	0.591730990414025	0.821798567210644
Merged-chr11-20917747-1	chr11	20917647	20917847	+	561.5	f0_balb.idr	Intergenic	Intergenic	-86639.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	2.78099358407682	2.46303005240585	2.72783575535755	2.66962365023569	2.09775838652191	2.21084759507518	2.26768232501855	2.41861762478908	-2.94491766769136	0.00171428357447308	0.0207166367652665
Merged-chr1-39901449-7	chr1	39901359	39901559	+	931.261902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 1 of 29)	CpG	546.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	4.13713733030671	3.75382450348058	4.37043815554033	3.82676661734978	3.78279053662683	3.73982550800893	3.88804957159381	4.09181079602022	-0.424120926650554	0.368973551370367	0.673345513613766
Merged-chr11-85667729-4	chr11	85667635	85667835	+	971.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	52009.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	5.63634769929105	6.22702560184286	5.84812294834163	5.58422582825564	5.47502895573318	5.29091808043922	5.04521293299159	5.44118533235706	-0.879122635034607	0.00462489630534573	0.0448373051100795
Merged-chr14-73401319-4	chr14	73401213	73401413	+	977.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16024.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	4.75065243420103	4.43350760290822	4.86389603005237	5.16835167366292	4.62777213476552	5.17064031742712	4.87559655984537	4.82427369373127	0.0677213118145971	0.857951982742847	0.946470415976769
Merged-chr1-64717644-4	chr1	64717526	64717726	+	913.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097644, intron 7 of 9)	intron (NM_001097644, intron 7 of 9)	20124.0	NM_001042659	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	4.48177017879968	4.45636000980177	4.06773404494006	4.59913137547926	4.18371775696642	4.44243921284624	4.15452567169533	4.5558459496835	-0.20767503197874	0.609721539181295	0.831199401158713
Merged-chr4-130811939-4	chr4	130811854	130812054	+	893.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	19417.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	4.2640734629078	4.20739742788561	4.30856163476004	4.56269586562791	4.25868388587252	3.97175515716943	4.41096841973117	4.30588447779913	-0.267295696909132	0.511994034248232	0.775668292015302
Merged-chr16-92440374-4	chr16	92440236	92440436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	25833.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	6.12830287240914	6.41472712748366	6.49839779566257	6.44541473757635	5.40191084867171	5.81492483668667	5.54764944897489	5.41238542906688	-1.34400188032948	1.88012242335263e-07	7.62536945708358e-06
Merged-chr19-6858242-4	chr19	6858153	6858353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081291)	promoter-TSS (NM_001081291)	-42.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	6.03896297028876	6.72364090829094	5.90044898049161	5.64338309876679	6.37571877589042	6.1950495912836	6.26586199837831	6.16137568968236	0.175705471720845	0.561729243322576	0.805125265509306
Merged-chr17-67350598-4	chr17	67350459	67350659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	3900.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	7.84469317677877	8.06399037568009	7.99459296331663	7.96792283896916	7.88064586522567	8.06048356015828	7.78537759057603	7.48716536354363	-0.195796256565692	0.285229914863649	0.596953252281083
Merged-chr8-119438976-4	chr8	119438885	119439085	+	762.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027950, intron 1 of 5)	intron (NM_027950, intron 1 of 5)	1823.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	3.26272647501302	3.30622341754234	3.53592515956243	3.27894736492901	3.6061876821759	3.24657126726508	3.05851304032986	3.53379516007874	0.140926125438919	0.800493557111091	0.923040237917604
Merged-chr8-26239832-4	chr8	26239749	26239949	+	871.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81680.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	3.81304165632605	3.97622378253795	4.1078075622253	4.34038849685033	3.53814348306444	3.93451889942545	4.08930462229304	3.96670416774013	-0.53274609102749	0.262967520193657	0.574735947525663
Merged-chr14-57887290-4	chr14	57887160	57887360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029492, intron 1 of 12)	intron (NM_029492, intron 1 of 12)	3076.0	NM_029492	75965.0	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|HK11	zinc finger, DHHC domain containing 20	protein-coding	4.83647464012954	4.96586495739526	5.14493716016578	5.01460081714765	4.93288188252157	4.93383053723055	5.11967131509103	5.04707093793809	0.0229651418394803	0.941290039900501	0.978832177973057
Merged-chr1-152038456-7	chr1	152038352	152038552	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 1 of 5)	intron (NM_197990, intron 1 of 5)	51868.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	3.78686678211864	3.59216930367623	3.42347309579169	3.95214631867616	3.5199755619457	3.41000744576377	3.35079064290613	3.5365223270337	-0.835000841646652	0.108347386822024	0.363296525655024
Merged-chr12-79352340-4	chr12	79352246	79352446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	54995.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	4.858045427095	4.81903019666144	5.00997197261704	4.9857288511816	5.23733020374429	5.31875763498536	5.29762253811675	5.45240712650616	0.748201804310523	0.0123237169900812	0.0915643488928436
Merged-chr16-30010413-4	chr16	30010319	30010519	+	933.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033631, intron 1 of 2)	intron (NR_033631, intron 1 of 2)	1752.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	4.39585529133625	4.12814399707517	4.90969253349789	5.34391597472194	4.74142481887561	4.42727181802745	4.51355804263489	4.90629361399065	-0.276929369165416	0.549045217869872	0.797805237578026
Merged-chr15-59511695-3	chr15	59511592	59511792	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	L2a|LINE|L2	-136962.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	4.18532061976824	3.93424706890587	4.04718706949397	2.56305011717968	6.19810306730729	6.61577767160566	6.29249880660752	6.48380869468344	5.56583275221256	2.28078786322873e-09	1.37230937714926e-07
Merged-chr5-3360100-4	chr5	3359996	3360196	+	912.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	MTE2a|LTR|ERVL-MaLR	16203.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	4.56125850320321	4.72794377183483	4.6031543276725	4.39774489774499	4.65303154984326	4.60702118735036	4.9893364985992	4.60017916401973	0.33486738826739	0.348850354153385	0.656535237677483
Merged-chr7-72299871-1	chr7	72299771	72299971	+	833.0	f0_balb.idr	intron (NM_001024703, intron 1 of 22)	intron (NM_001024703, intron 1 of 22)	6724.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	3.57665448252744	3.42781816343181	3.71570599601847	3.94979648384195	2.77701309042931	3.29639445245958	2.95989360911459	2.96678057145619	-2.9052432024108	2.78639556440194e-05	0.000680854273527518
Merged-chr15-85012782-3	chr15	85012664	85012864	+	941.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4377.0	NM_023478	22270.0	Mm.46214	NM_023478	ENSMUSG00000022435	Upk3a	1110017C07Rik|UP3a|UPIII|Upk3	uroplakin 3A	protein-coding	3.88549902275478	3.97024755170905	4.11008880862533	4.32790466220894	3.85764542872179	3.73289769898146	3.54066359191737	3.34814789226053	-1.31375497202929	0.0100514742473193	0.0791956924341313
Merged-chr15-101053199-2	chr15	101053099	101053299	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001214911, exon 1 of 1)	exon (NM_001214911, exon 1 of 1)	1200.0	NM_001214911	668225.0	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	2.91728758436537	2.88284171164956	3.04032005806904	2.92222287160923	2.85127752009112	3.02604141249823	3.13930562714077	3.09585361553201	0.372715185235108	0.522496031350592	0.781971587334536
Merged-chr10-80323620-6	chr10	80323579	80323779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008793, exon 10 of 15)	exon (NM_008793, exon 10 of 15)	-3131.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	4.80321771115122	4.84415508552154	5.07689271313773	4.57436134402896	4.83531765969944	5.24721625655502	4.7429878384726	4.8008216508875	0.193060541383303	0.582824938463907	0.816777579274426
Merged-chr4-134478204-4	chr4	134478053	134478253	+	918.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER102c|DNA|hAT-Charlie	9833.0	NM_019641	16765.0	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	3.69636211320367	4.17661612608201	3.81672987895842	3.99180222801399	4.10776785624867	4.29337449989191	4.38496055846456	4.02611241488398	0.691615276617956	0.113956014895757	0.373395718099024
Merged-chr7-81243259-4	chr7	81243160	81243360	+	828.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 1 of 21)	intron (NM_008803, intron 1 of 21)	29456.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	3.95160059026417	4.04571787772439	3.52325314388097	3.48233889514308	3.97444093434654	3.7630857543306	3.79153971345326	3.90335332430869	0.281379195840078	0.563993522519731	0.806558370465832
Merged-chr7-114117730-4	chr7	114117626	114117826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025846)	promoter-TSS (NM_025846)	55.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	6.07536369012644	6.03125190411942	5.92615306808814	6.05674105867138	5.81150846625555	5.98310184876392	6.00448882111527	5.94451949950758	-0.151326483202388	0.522596048044965	0.781990067507927
Merged-chr17-25045104-2	chr17	25045012	25045212	+	965.8333130000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_134126, exon 13 of 30)	exon (NM_134126, exon 13 of 30)	29026.0	NM_134126	106633.0	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	3.20130814511615	3.30130703153859	2.82437941900765	2.48319124146608	3.47811440611051	4.25695284378666	3.37363187936336	3.32703071974264	2.21656821229886	0.0357515837294868	0.187819173243866
Merged-chr19-53453889-3	chr19	53453808	53454008	+	939.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028427, intron 2 of 9)	intron (NR_028427, intron 2 of 9)	10888.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	3.62270767861978	3.49883988446637	3.70851442401222	3.50991796341981	2.68358508445841	2.81496020835446	2.78068226437173	3.01320399651251	-3.98681649498724	3.03586775250487e-06	9.54461266588093e-05
Merged-chr7-48962109-1	chr7	48962009	48962209	+	677.333313	f0_balb.idr	intron (NM_001111016, intron 1 of 38)	intron (NM_001111016, intron 1 of 38)	3036.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	3.39421337830287	3.22539777045393	3.33840894881727	3.72485084565342	3.38755982463454	3.04650692683209	3.381585435075	3.4982103791945	-0.366417761187457	0.521031287092806	0.78111362380667
Merged-chr8-24438969-4	chr8	24438867	24439067	+	962.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026931)	promoter-TSS (NM_026931)	-21.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	4.76445927190246	4.70850535800249	4.39256998229317	4.47695415059934	4.6030827493928	4.86328234212839	4.6691679736897	4.79743022678866	0.309295640010151	0.379676788774321	0.682157007046657
Merged-chr2-167700954-4	chr2	167700832	167701032	+	973.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9755.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	5.14000054368866	4.80110383985211	6.12546173796643	6.35497145348358	5.02968857924396	4.77403572802564	5.04322519536994	5.36353514839978	-1.20650837541184	0.0590958870601977	0.256143353127379
Merged-chr9-65303797-3	chr9	65303691	65303891	+	610.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001044389, intron 3 of 12)	MTEb|LTR|ERVL-MaLR	9531.0	NM_001044389	270166.0	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	3.45803177408684	3.23314881398511	3.29588652881657	3.31465825498616	3.25845188186376	3.34832832194394	3.3394368029016	3.29417963993517	-0.0634803092296554	0.90268234000094	0.963862322481315
Merged-chr6-85937039-4	chr6	85936920	85937120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	21049.0	NM_001362065	69786.0	Mm.218434	NM_176842	ENSMUSG00000054226	Tprkb	0610033G21Rik|1810034M08Rik|Cgi-121|DRWMS1|mDRWMS1	Tp53rk binding protein	protein-coding	6.21446910176889	6.46676079127066	6.62397333862578	6.08642744088741	6.34999737328477	6.41206191862934	6.26132762412941	6.44847935159911	0.0266607002460143	0.910945708467141	0.966904162861598
Merged-chr9-21016724-4	chr9	21016626	21016826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010493, intron 1 of 6)	intron (NM_010493, intron 1 of 6)	786.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	7.75134823634263	8.36611991227514	7.75265562131832	6.90711139326519	8.065997805858	8.23237150387492	7.70686714747302	7.24679629868561	0.0881963743688109	0.847469876243891	0.942302928724103
Merged-chr1-155814837-3	chr1	155814738	155814938	+	923.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1939.0	NM_001024945	104009.0	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo	quiescin Q6 sulfhydryl oxidase 1	protein-coding	4.4096381252026	4.39024909166347	4.67772829088217	4.90467732714229	3.18312803159499	3.36598093511454	3.39119630140315	3.47592595865674	-4.70966506632496	1.81919247545837e-10	1.33493094031599e-08
Merged-chr5-74794335-2	chr5	74794232	74794432	+	625.666626	f0_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-91429.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	3.29448589768812	2.9758013531704	2.94582624410722	3.00200980946378	2.44818724248964	2.48806974277156	2.46162959854017	2.69177589086284	-3.1584853413679	0.000197508001169365	0.00360103022931204
Merged-chr1-134076869-6	chr1	134076747	134076947	+	972.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007570, exon 2 of 2)	3' UTR (NM_007570, exon 2 of 2)	2308.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	3.73999487023515	4.12428596864824	4.05794656709157	4.00021654789342	4.15726132329783	3.66668787100755	4.17241781344167	4.34714596236038	0.319835005032091	0.481574733308119	0.756705621363355
Merged-chr10-122570839-4	chr10	122570728	122570928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040616)	promoter-TSS (NR_040616)	-937.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	5.33260565079615	5.17548292718934	5.53787711362321	5.81882227204768	5.53591289064477	5.60040869395248	5.51003734176609	5.66194432693135	0.111315385657957	0.70980332395067	0.883774219565378
Merged-chr1-155223930-2	chr1	155223830	155224030	+	782.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65227.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	3.32069310948111	3.203694523678	3.20619689630052	3.37225103407966	3.23016405767532	3.25418453413508	3.36134601880809	3.26325812369999	-0.0282306388462681	0.957399975006163	0.984815156534365
Merged-chr18-10029133-3	chr18	10029034	10029234	+	701.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038589, intron 1 of 14)	intron (NM_001038589, intron 1 of 14)	679.0	NM_001360884	59025.0	Mm.329277	NM_021522	ENSMUSG00000047879	Usp14	2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375	ubiquitin specific peptidase 14	protein-coding	3.37049559603955	3.37779025743079	3.31694988964711	3.28408160823167	3.25660935942992	3.11513027301668	3.1295201342682	3.31515461954915	-0.469500672683707	0.382015213128155	0.684226111802756
Merged-chr2-117439309-4	chr2	117439203	117439403	+	872.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96426.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	3.97131747690626	4.31385353698028	3.91850200091196	4.17613686799178	4.12380918891431	4.19642574089755	4.31393008265329	4.02082882243416	0.135583173260206	0.745124049145165	0.899431814827356
Merged-chr9-20978997-4	chr9	20978943	20979143	+	865.2062380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2250.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	3.57197590165028	3.43627783067978	3.62241982461986	3.3885059392741	3.61476311489702	3.11814878755907	3.45289892913273	3.57041409559041	-0.140277579603879	0.791653321104531	0.919252187122779
Merged-chr16-31938965-4	chr16	31938839	31939039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172822, intron 1 of 2)	MTE2b|LTR|ERVL-MaLR	5088.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	6.223867711971	6.14406610719074	5.9970106139987	6.08387503781311	6.15997209156769	6.12781048531394	6.36870512722	6.22051660702828	0.166303384510269	0.464773194460008	0.745554240368249
Merged-chr2-102887256-4	chr2	102887156	102887356	+	957.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	14409.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	5.39587757458833	5.40689013735728	5.47913068862957	5.16255431711641	5.57946076033999	5.62497985962579	4.93863039468415	5.07266137470588	-0.0193949184416782	0.952357017955976	0.983110341498473
Merged-chr18-31914644-3	chr18	31914538	31914738	+	820.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2735.0	NM_026006	67158.0	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	3.25717782626994	3.51372410943828	3.38475477620952	3.72696322003741	3.48528468084763	3.91723019875372	3.37272146908896	3.49894634182952	0.27837467433652	0.607625461614282	0.830095782043007
Merged-chr9-122357233-4	chr9	122357094	122357294	+	879.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359207, intron 1 of 4)	intron (NM_001359207, intron 1 of 4)	5578.0	NM_026179	67469.0	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	3.80164459746059	4.05452293585405	3.9966786791398	4.09396218049723	3.73958649800799	3.86743143604629	3.7340561846079	3.69074697207965	-0.698544157496741	0.118636848239961	0.381059370142085
Merged-chr15-96666879-4	chr15	96666788	96666988	+	873.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-23975.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	4.2603650375581	4.04243603006124	4.08601273135546	3.88500552141543	4.11623255604057	4.05966067110562	4.28110790913332	3.88116389477588	0.0825207257831907	0.846272807036081	0.941927981530162
Merged-chr15-5495309-4	chr15	5495205	5495405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1013.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	6.25281614886801	5.92279675873521	5.94212822721092	5.78515052449019	6.04487655524109	6.04952073948758	5.95495944928525	5.28974797289434	-0.16421668601813	0.57308493375272	0.811676466483302
Merged-chr1-43474253-4	chr1	43474135	43474335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	28484.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	5.83083558860013	5.8094616834779	5.46057510219524	5.51718901497172	5.77368404210419	6.00590509502157	5.49307880733337	6.05781876600141	0.311460597613316	0.264950971853698	0.57679670985975
Merged-chr14-26669732-7	chr14	26669639	26669839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106132)	promoter-TSS (NR_106132)	107.0	NM_178668	211948.0	Mm.290758	NM_178668	ENSMUSG00000043702	Pde12	2'-PDE|E430028B21Rik	phosphodiesterase 12	protein-coding	5.32524015857011	4.9387330478999	5.55950864083942	4.98905970717234	4.88186439812196	5.1440687925193	5.11709784497491	5.50737895124551	-0.0727494649283892	0.832455593350987	0.935835439369668
Merged-chr1-77740659-3	chr1	77740560	77740760	+	697.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	-225572.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	2.92310195896991	3.28377263630536	3.0908133851316	3.12858495183102	2.48708974891111	2.52899780028979	2.57982845058203	2.65961126543651	-3.21471176367348	0.000109219315126538	0.00218435561432758
Merged-chr6-129103337-4	chr6	129103250	129103450	+	951.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2447.0	NM_153506	232409.0	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	4.8029600904017	4.62926359360317	4.76541347630957	4.93443487873483	5.03063987174383	4.8195527280219	4.95555190477885	4.97639126562751	0.307286321233845	0.347131549441718	0.655275586965604
Merged-chr9-106365513-4	chr9	106365427	106365627	+	825.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-3105.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	3.90280950658099	3.82807764317438	3.45571651796575	3.67659085191059	3.77718024002109	3.92585718275919	3.6839182589129	4.15678409388922	0.492539077476304	0.299031337339919	0.611311162969898
Merged-chr14-70880274-4	chr14	70880130	70880330	+	996.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9877.0	NM_001302095	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	4.93997266575488	4.69051439553751	4.97498140943011	4.86062579841992	4.86017681206695	4.84896069016961	5.16419328133664	5.00483584082389	0.212182304414784	0.511885361090783	0.775668292015302
Merged-chr6-72095370-3	chr6	72095293	72095493	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2215.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	2.91191777275882	2.99286567578801	3.15579580246382	3.07452113717411	3.0115864499321	3.14883246730166	3.08748172319176	3.09743813990406	0.1838406116388	0.74535406384686	0.899487248831095
Merged-chr16-36821688-4	chr16	36821590	36821790	+	898.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134111, intron 2 of 5)	intron (NM_134111, intron 2 of 5)	6569.0	NM_001113401	106389.0	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	3.6742613426766	3.8173943575124	3.88458801692088	3.89994804409887	4.04045969952537	3.79215946389564	3.819514133642	3.83303561508702	0.156397810959917	0.7255515746486	0.890921883682774
Merged-chr2-155373455-4	chr2	155373345	155373545	+	905.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	-8411.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	5.26878055800378	5.13433367285197	5.04399154330533	5.20171488670117	4.36872363547509	4.33390575665139	4.44786469109223	4.60214280596431	-1.5438609015053	8.69284532978392e-06	0.000243123001072177
Merged-chr6-38714169-4	chr6	38714031	38714231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 12 of 14)	intron (NM_010433, intron 12 of 14)	51062.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	5.61791030129447	5.73506674495112	5.92167954409551	5.9153212997536	5.68070900304466	5.29072194517261	5.56414088752661	5.44635416089956	-0.496494973675915	0.0693759048645094	0.281678599757624
Merged-chr9-102860195-4	chr9	102860093	102860293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284258, intron 1 of 13)	intron (NM_001284258, intron 1 of 13)	25273.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	6.44875250441458	6.33658177179261	6.85182821937878	6.69680818270397	6.58651887669949	6.9318202908183	7.03405584477172	6.84696120763274	0.35689319688331	0.119406723577843	0.382384090410191
Merged-chr3-148981981-3	chr3	148981890	148982090	+	778.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27355.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	3.21523599933662	3.96126684686049	3.21569015272609	3.4843721553051	2.73315437179899	2.75860489270559	2.87930501715525	2.81089668822377	-3.41275484001216	1.56949892869347e-05	0.00041238598835538
Merged-chr10-128626826-4	chr10	128626704	128626904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013765)	promoter-TSS (NM_013765)	-298.0	NM_013765	27370.0	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	7.1957541789677	7.28266304854098	6.5469033634686	6.98616242079648	7.38968700683516	7.3738485239216	7.43612610485057	7.01446535707661	0.383231910275573	0.0913141750377919	0.330216515013717
Merged-chr8-125067613-9	chr8	125067588	125067788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 1 of 12)	intron (NM_174854, intron 1 of 12)	13493.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	5.38486150012742	6.1207278814937	5.93115120486764	5.46863984622377	6.55097826892961	6.63370024165585	6.209163431314	6.14178557290029	1.00177146726447	0.000494323644157806	0.00764941215767558
Merged-chr17-12029585-3	chr17	12029524	12029724	+	771.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016694, intron 10 of 11)	intron (NM_016694, intron 10 of 11)	-89660.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	3.08771177252118	3.27835063562428	3.39970032863737	3.3319931505194	3.55303740922923	3.51396636898234	3.3305503993055	3.55404166045833	0.721722938286433	0.16461363911116	0.45485234168206
Merged-chr15-103323577-4	chr15	103323476	103323676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356627, intron 2 of 7)	CpG	10762.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	5.54946275356918	5.36556944563062	5.4668645476052	5.43946086530124	5.49536466745785	5.69765440111633	5.78695066833136	5.59926618487051	0.323649274680839	0.225184826253587	0.533565878802898
Merged-chr11-117781719-4	chr11	117781614	117781814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195088)	promoter-TSS (NM_001195088)	-583.0	NM_001195090	217356.0	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	6.69125408932154	6.49389105571439	6.40403075215161	6.76093965538497	6.54481270524975	6.27932469079213	6.35326250859652	6.62910102009766	-0.206158022571866	0.358270420172713	0.664320653179664
Merged-chr6-82752766-1	chr6	82752666	82752866	+	608.0	f0_balb.idr	intron (NM_013820, intron 2 of 17)	intron (NM_013820, intron 2 of 17)	21688.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	3.7764556917038	3.95714434880982	3.36089710957621	3.41460164324143	3.49338982692254	3.34611008570109	3.08230455873081	3.4762610849128	-0.954014113173927	0.0963019739300827	0.340048212247575
Merged-chr1-120449812-4	chr1	120449716	120449916	+	908.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55208.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	3.88995704230673	4.38466257388731	4.37672948820109	4.43161889005062	4.85118047109358	4.75709548297772	4.86715397174582	4.23068322650692	0.903587028586283	0.0306185953264044	0.169524035216097
Merged-chr8-95014299-3	chr8	95014193	95014393	+	888.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001198894)	TTS (NM_001198894)	-3399.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	3.38335416872523	3.27411737747406	3.55283292596075	3.88545754912952	3.5670320457808	3.22889039395931	3.58969055729892	3.65212844099834	-0.124415940703921	0.823143247995012	0.932185203682946
Merged-chr12-111166451-4	chr12	111166358	111166558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286122)	promoter-TSS (NM_001286122)	88.0	NM_011632	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	6.752913470811	7.29682387471538	6.28684234529536	6.40418645701367	6.88484115880779	7.00097983411277	7.0361668919375	6.40189803618252	0.150974398526558	0.599485228219486	0.826408162440152
Merged-chr8-25225034-4	chr8	25224941	25225141	+	820.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23499.0	NM_177089	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	4.2941728593951	4.16312445381182	4.46895334819472	4.5842495442448	4.39231340676447	4.21994744583795	4.32136967750457	4.848150560885	0.162143826836822	0.691393257762433	0.874499062596085
Merged-chr11-50769648-2	chr11	50769548	50769748	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175643, intron 5 of 21)	intron (NM_175643, intron 5 of 21)	58083.0	NM_013922	30944.0	Mm.103674	NM_013922	ENSMUSG00000044807	Zfp354c	5330421P20Rik|AJ18|AW743325|Kid3|Tcf17l2|Znf354c|mKIAA4218	zinc finger protein 354C	protein-coding	2.98240925356563	2.71356801569398	2.98285158805523	2.48907161298946	2.9209079879277	2.78414053130882	2.73478170235041	2.53088547511821	-0.232713690648581	0.738630536002967	0.896877907235674
Merged-chr3-58517423-3	chr3	58517323	58517523	+	730.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8398.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	3.60603159785677	3.75564778751686	3.54665431013474	3.33131063466437	3.87362568410769	3.7838869439526	4.07028527569351	4.04634234596995	1.17170432750189	0.0124544527623784	0.0921992192587966
Merged-chr11-5788463-4	chr11	5788343	5788543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146308)	promoter-TSS (NM_001146308)	-40.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	7.78054234153393	7.94530555292532	7.91783954215103	7.86268266984695	8.00842298423702	8.02917098605283	8.04655077351193	7.94081595487281	0.166236064248462	0.287710470739169	0.599570898136296
Merged-chr1-7114088-4	chr1	7113983	7114183	+	924.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183028, intron 1 of 5)	MLTR14|LTR|ERV1	25163.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	4.76363772193472	4.67879140397136	4.44003924922961	4.94673421134433	4.71647132165794	4.82429019278705	4.50874181825238	4.39047671465883	-0.239996494849255	0.517817704724325	0.779085298877016
Merged-chr9-58955728-3	chr9	58955621	58955821	+	806.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008684, intron 7 of 28)	B3|SINE|B2	80720.0	NM_001042752	18007.0	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	3.39426793868399	3.01089678383836	3.29001729500699	2.70785569084172	3.45255960373381	3.02427893860276	3.10368520635622	3.28810108876528	0.402965138734415	0.525558354652317	0.783297418773761
Merged-chr16-44243467-4	chr16	44243363	44243563	+	974.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198034, intron 24 of 24)	intron (NM_198034, intron 24 of 24)	70066.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	5.27461589771852	4.68066870659136	4.60959409802909	5.02545305951981	5.06625521318092	5.24053827069701	5.01136558954986	4.85611796703512	0.23410046286966	0.500824058288993	0.769017904448726
Merged-chr15-7129481-4	chr15	7129398	7129598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113386)	promoter-TSS (NM_001113386)	-74.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	5.35676771425796	5.66107290194195	4.73173075487167	5.39473001502875	5.72899295553375	5.83481387512437	5.91455736586975	5.44406757291453	0.690927014910357	0.0341097514369018	0.182356767126876
Merged-chr6-17615975-4	chr6	17615891	17616091	+	827.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21019.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	3.81746319923169	3.98288813900891	4.16046906214192	3.3675283165954	4.25275113213949	4.1975009730007	4.09796146716112	3.97350557748907	0.764517210693644	0.113003591340015	0.371523447020365
Merged-chr3-158076829-4	chr3	158076740	158076940	+	971.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40158.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	4.5423932649961	4.59188633385132	4.15430758224069	4.39500192522555	4.63675088151743	4.90917864369985	4.71523493217698	4.93464124039632	0.795475707865511	0.0278337210014286	0.159455149781896
Merged-chr15-59146261-4	chr15	59146158	59146358	+	860.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64232.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	4.7494635277766	4.77040248228501	4.56230258860846	4.44585951801596	4.59743854857834	4.37064264978437	4.32323469766855	4.7470531260275	-0.229833538042754	0.538553092586917	0.791666974563585
Merged-chr11-64065381-3	chr11	64065278	64065478	+	909.4722289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178379, intron 3 of 6)	intron (NM_178379, intron 3 of 6)	14094.0	NM_178379	70383.0	Mm.340211	NM_178379	ENSMUSG00000042148	Cox10	2410004F01Rik|AU042636	cytochrome c oxidase assembly protein 10	protein-coding	3.40576194344511	3.49258477183743	3.32704953987496	3.63657331895756	4.85979368383919	3.9967604431167	4.87456260648904	4.2529744224966	2.840337711322	7.04374242672928e-07	2.53856477059323e-05
Merged-chr12-5375738-3	chr12	5375637	5375837	+	941.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015579)	promoter-TSS (NR_015579)	-55.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	3.60677717066289	3.53782323518126	3.72360736766476	3.6795361379384	4.01903724882043	3.84415619341534	4.00288155000164	4.29495993301033	1.15744347636028	0.0101794573139758	0.0799209786180763
Merged-chr4-134852610-8	chr4	134852494	134852694	+	937.3229369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355499, intron 1 of 11)	CpG	751.0	NM_001355501	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	3.67198079612037	3.68837174078166	4.23253187329169	3.5808037883439	3.85866454277961	3.60363218711078	3.91880946203432	4.22964746139559	0.308454379830562	0.537779140271971	0.791223080787503
Merged-chr11-49086982-4	chr11	49086816	49087016	+	826.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271676)	promoter-TSS (NM_001271676)	-101.0	NM_001271676	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	3.69832984589312	3.4626221157159	3.31542799770877	3.2972379949153	3.80369200251747	3.42912582457535	3.42416172421192	3.64845619434369	0.487425139376738	0.345407361379073	0.653728716702946
Merged-chr12-118846730-3	chr12	118846590	118846790	+	941.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177082, intron 1 of 2)	intron (NM_177082, intron 1 of 2)	361.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	3.87133943732807	3.79856512771278	3.61333861177544	3.78027394983255	3.74989920681646	3.7301566997046	3.90059820721668	3.61146309256583	-0.0529263962062402	0.907901433882153	0.965928525810469
Merged-chr8-35123466-4	chr8	35123355	35123555	+	982.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157765.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	4.91706929880476	4.70158457520873	4.95514793250761	5.11088659767422	4.97045337396098	5.23516176197601	5.43511065918158	5.35690339817943	0.587984787391536	0.0718070650332089	0.28789488040294
Merged-chr8-14911600-4	chr8	14911494	14911694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172751)	promoter-TSS (NM_172751)	-69.0	NM_172751	234094.0	Mm.240298	NM_172751	ENSMUSG00000071176	Arhgef10	6430549H08Rik|mKIAA0294	Rho guanine nucleotide exchange factor (GEF) 10	protein-coding	5.86862040688155	6.07531105159405	6.18751040102652	6.06309567266864	6.06356203454952	6.15991790283979	5.9097210421308	5.79115935153686	-0.100629689584979	0.679878245272894	0.86857902618052
Merged-chr6-120472095-4	chr6	120472001	120472201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008359, exon 2 of 13)	exon (NM_008359, exon 2 of 13)	8904.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	6.80313446938029	6.70137916749981	7.1307153415394	7.10404907969926	6.70462184544774	6.28348875425971	6.83664596133057	6.33769806508923	-0.544293279220587	0.0221901817787003	0.13729789193551
Merged-chr11-11547219-3	chr11	11547083	11547283	+	922.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57917.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	2.76000660591332	2.69118938498751	2.84484060021174	2.40752846738883	4.1069663924814	3.45651971229527	3.80002139103221	3.54731515896462	5.38424671340649	2.08567593409309e-12	2.10576350798315e-10
Merged-chr10-40883429-4	chr10	40883341	40883541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031877)	promoter-TSS (NM_031877)	-93.0	NM_031877	83767.0	Mm.41353	NM_031877	ENSMUSG00000019831	Wasf1	AI195380|AI838537|Scar|WAVE|WAVE-1	WAS protein family, member 1	protein-coding	6.81327729994206	6.61556767311286	6.71721851478523	6.73958170225417	6.54309325782785	6.42899365702284	6.79308293638232	6.47469609452434	-0.22181092023172	0.290325101256236	0.602462038492102
Merged-chr14-75034392-4	chr14	75034299	75034499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198642, intron 2 of 13)	intron (NM_198642, intron 2 of 13)	18372.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	6.44886899351193	6.17527500180139	6.13408468769744	6.47048019507277	6.29944036140334	6.10696520262546	6.36697685598294	6.41212087166716	-0.0348833714791659	0.880616092326227	0.955181994949486
Merged-chr16-33535143-3	chr16	33535039	33535239	+	698.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 2 of 11)	intron (NM_001083902, intron 2 of 11)	16544.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	3.54472670808038	3.31353245640054	3.6444420946253	3.98831253402685	3.08358795897953	3.23500811134652	3.53033231217338	3.12147379254552	-1.4210500012016	0.0159167140359435	0.109293438970135
Merged-chr8-75033828-7	chr8	75033735	75033935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 1 of 15)	CpG	149.0	NM_011622	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	7.42334362845842	7.47678547768971	7.80890648020608	6.67653537771136	7.41768039060651	7.94214260244865	7.4355569528851	7.50449406939789	0.25392803371176	0.336500683816853	0.646470196956367
Merged-chr17-71684420-4	chr17	71684342	71684542	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177087, intron 1 of 19)	intron (NM_177087, intron 1 of 19)	11181.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	5.42577442706229	5.97486894540684	5.56378132739291	5.43182909780015	5.25858840462368	5.54322265521083	5.42795502139505	5.05749106224183	-0.499816807397932	0.104996290141293	0.356374561821901
Merged-chr16-91362862-3	chr16	91362789	91362989	+	803.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9894.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	3.91034663432742	4.1077849583988	3.82030556460734	3.16690283066056	3.30166141957447	3.73845149078528	3.29900851449441	3.50057993526334	-1.0221884156758	0.079984545592106	0.306345557654261
Merged-chr12-102432914-4	chr12	102432815	102433015	+	966.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	6898.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.11031749072675	4.87699396489929	5.04838559908469	4.81644741917568	5.44460597850035	4.72324111189529	4.52168795854227	4.90923808427365	0.0107261810187315	0.977482162712055	0.991888117862217
Merged-chr17-46857706-4	chr17	46857573	46857773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A4|LTR|ERVK	-26260.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	5.36047738507675	5.46386821313949	5.19627197306405	5.27399523475258	5.67606359667317	5.90704268806356	5.55975040925336	5.6836998871195	0.6599090946543	0.0151206750132448	0.105455078068563
Merged-chr7-91716905-4	chr7	91716813	91717013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011807, intron 2 of 22)	intron (NM_011807, intron 2 of 22)	-345481.0	NM_001243046	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	6.66772121467673	6.45244894754807	6.69632128240154	7.05153456466253	5.89005019445757	5.3479387076057	6.26845642986917	5.80440184224129	-1.31308886960834	4.59915817690111e-06	0.000137779242371062
Merged-chr4-99929427-4	chr4	99929319	99929519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028132)	promoter-TSS (NM_028132)	-32.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	6.91958847995905	6.96805772387713	6.98548246321576	7.19858701018135	6.91756004450846	6.98698021168405	7.08123559791798	6.86167680734335	-0.0999524625652263	0.608894106246099	0.830813576385782
Merged-chr7-43443509-4	chr7	43443403	43443603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026695)	promoter-TSS (NM_026695)	-569.0	NM_026695	110826.0	Mm.30200	NM_026695	ENSMUSG00000004610	Etfb	0610009I16Rik|2810441H06Rik	electron transferring flavoprotein, beta polypeptide	protein-coding	6.46042408853843	6.8648113366252	6.38764000365119	6.64671210704511	6.68643696222888	6.85216279809943	7.11328617385823	6.56026257272612	0.295124203865448	0.205418996339859	0.508981750286309
Merged-chr15-57906004-4	chr15	57905894	57906094	+	703.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6205.0	NM_001081396	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	3.44528047233113	3.90515671811649	3.56734651145433	3.70476315143444	3.36774713693397	3.7427749356488	3.81307977590678	4.00411365953967	0.229359427059043	0.654758430226934	0.855719484881901
Merged-chr1-39615002-4	chr1	39614891	39615091	+	984.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36191.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	5.06754298796624	5.11026785653008	4.77300657396498	4.6478791263072	5.11038556635565	5.24160545795154	5.04357581472341	5.27668778332489	0.521663014333375	0.108022641554536	0.362617600604145
Merged-chr14-55585282-4	chr14	55585176	55585376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033146)	promoter-TSS (NM_033146)	-22.0	NM_033146	85308.0	Mm.40667	NM_033146	ENSMUSG00000022217	Emc9	1500005A01Rik|Cgi112|Fam158a	ER membrane protein complex subunit 9	protein-coding	6.42001326263813	6.23306781631425	5.96050393872502	6.14864394456798	6.21894258683415	5.73717015292852	6.25337427528989	6.06704010407941	-0.161769012597434	0.5224117847316	0.781971587334536
Merged-chr6-125350208-3	chr6	125350067	125350267	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	444.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	3.3647920052669	3.54463975777405	4.02170568993323	3.527944737623	4.00126015562705	3.68083239341542	3.86870822166815	4.17965128862001	0.910664503760964	0.0681192516600432	0.278626606936571
Merged-chr7-127614699-4	chr7	127614571	127614771	+	846.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177226)	promoter-TSS (NM_177226)	196.0	NR_155452	320683.0	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	4.02591835947438	3.94707457766934	4.07253094375394	3.99690179193232	3.88996204043661	3.99892845094213	3.75383475725911	4.19855320040477	-0.114485442389225	0.79051932816316	0.918840742585233
Merged-chr13-20794115-4	chr13	20794012	20794212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281854)	promoter-TSS (NM_001281854)	-1.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	6.65697466763887	6.90551613749663	6.97190420937977	6.6419463119552	6.92426628803079	6.68782170710522	6.79689259558549	6.31834130399368	-0.123152683851416	0.591842634090329	0.821848634889742
Merged-chr10-42680774-4	chr10	42680687	42680887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172416, intron 1 of 5)	intron (NM_172416, intron 1 of 5)	1871.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	5.87290445106557	6.06240359218625	6.29491336745337	6.03849266049588	6.28581663790339	6.31832074762294	6.31493185860769	6.0551260050475	0.270820593260976	0.250509049359363	0.561658607297159
Merged-chr1-10280380-4	chr1	10280280	10280480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47710.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	5.76062295382067	5.66416854777399	5.48708907809957	5.87411962019781	5.93194602009509	5.78087462708715	5.95650998216526	5.98285361091664	0.319594998463143	0.212851371261134	0.517816171020324
Merged-chr3-100993865-4	chr3	100993756	100993956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001167906, exon 9 of 9)	exon (NM_001167906, exon 9 of 9)	-24193.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	5.34128380513078	5.32184452554129	5.55964315318944	4.97336161992772	5.32971233934114	5.22159730171824	5.60359313313259	5.36777532216446	0.164987118562338	0.593997364332405	0.823259504951929
Merged-chr7-96477425-4	chr7	96477344	96477544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-135480.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	7.30163701809525	6.93385325518843	7.5143598809352	7.69428018658236	6.29267680209911	6.75758458243551	6.91068459813235	7.22564696211342	-0.771938726738104	0.0037931105102623	0.038428667663316
Merged-chr18-54908468-4	chr18	54908380	54908580	+	864.6124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	81700.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	4.0758488003008	4.52956607257934	4.22355289596103	4.46358162744279	4.42849547996884	4.20066671324201	4.2053348360193	4.22100569463401	-0.175234880979226	0.664012276684495	0.860811748117249
Merged-chr9-18453174-4	chr9	18453106	18453306	+	948.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028935)	TTS (NM_028935)	20353.0	NM_028935	72230.0	Mm.289689	NM_028160	ENSMUSG00000074500	Zfp558	1700007A21Rik|4932704I17Rik|Zfp558-ps	zinc finger protein 558	protein-coding	4.51990021929029	4.5467336529087	5.07241011159294	4.72154643979199	4.63488432803119	4.69561484397569	4.58300394184524	4.38139807079591	-0.326078852017146	0.377531704156498	0.680208808033093
Merged-chr5-122994641-4	chr5	122994553	122994753	+	972.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045820, intron 2 of 2)	intron (NR_045820, intron 2 of 2)	5299.0	NR_045820	109202.0	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	5.51810990184605	5.25744301936549	5.16543721198736	4.69439145723629	5.19882518864711	5.27539945581383	5.00860115572097	4.67128672286096	-0.222670309758676	0.543704994027611	0.794843258741606
Merged-chr3-104994097-4	chr3	104994060	104994260	+	834.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32451.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	2.95152462516489	3.17041845680768	3.3979896634766	3.55713538098969	2.95378706985342	3.39947772309075	3.27249849800969	3.72661781723345	0.259116248078385	0.683205906362276	0.870271715831715
Merged-chr9-123999947-3	chr9	123999844	124000044	+	860.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21536.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	3.77359069096085	3.67957058020821	4.25550228992025	4.3206634024835	3.65377797299916	3.72253231115235	3.64932945793345	3.60220279249672	-1.14239864460022	0.0217512256208005	0.13537033212057
Merged-chr3-83053950-4	chr3	83053882	83054082	+	573.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1556.0	NM_016784	53317.0	Mm.286349	NM_016784	ENSMUSG00000027998	Plrg1	AA958940|C80566|Tango4	pleiotropic regulator 1	protein-coding	3.09038362685746	3.16499856388982	3.15537847148098	3.45063662782145	3.38514379497672	3.3277966215816	3.42347903830804	3.33038051795797	0.45891975557961	0.40455363177476	0.701633073173063
Merged-chr18-5740605-4	chr18	5740462	5740662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360982, intron 2 of 7)	L1MD2|LINE|L1	147915.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	6.70502274065057	7.37010058590271	6.97070891930684	6.24412923200396	7.02240491355535	6.77141233988134	7.33794633661616	6.74702659223191	0.155614264379366	0.586185502938688	0.818557203798918
Merged-chr11-115132035-3	chr11	115131931	115132131	+	923.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169153, intron 1 of 6)	L2|LINE|L2	1961.0	NM_001347648	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	4.27639336516208	4.12029754788516	3.98269562536094	3.58143857172991	4.02261827611674	3.71936180727928	3.76291272289917	3.88200514708654	-0.407998034539642	0.402054570372979	0.699617217078065
Merged-chr4-21879823-4	chr4	21879723	21879923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356348)	promoter-TSS (NM_001356348)	-30.0	NM_001356348	230027.0	Mm.5662	NM_172687	ENSMUSG00000028247	Coq3	4732433J24|C77934	coenzyme Q3 methyltransferase	protein-coding	6.09703910437426	5.66954177181324	5.92762225700301	6.11891516056336	5.95432381800408	5.88142213965325	6.16223506525714	6.05328523910426	0.0663614262568405	0.793119302406724	0.91984160503818
Merged-chr1-136466289-4	chr1	136466196	136466396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1552.0	NM_001287179	381293.0	Mm.458468	NM_001081258	ENSMUSG00000041498	Kif14	D1Ertd367e|E130203M01	kinesin family member 14	protein-coding	7.4897762267734	6.99884395193905	7.24274120238103	7.41144373201766	7.3928175548346	7.11099680750011	7.51534525686326	7.40209948920613	0.0864858830487877	0.668404213650996	0.862948051435654
Merged-chr11-77335239-3	chr11	77335138	77335338	+	825.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 2 of 14)	MTD|LTR|ERVL-MaLR	-13042.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	4.15473598059418	4.01275232185866	3.9778557539527	4.07467154148444	3.37912370926794	3.50614584235515	4.25307043397207	3.92696145558029	-0.677765941378818	0.193286622959001	0.493524757598945
Merged-chr4-138214061-3	chr4	138213958	138214158	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2554.0	NM_001122896	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	5.29679103699916	4.8463606073812	5.11637523353299	5.18207371527476	3.98529791399918	4.24200458984718	4.0327424614546	4.51875188473463	-2.07521736028305	2.03075913669297e-07	8.18501724748976e-06
Merged-chr18-53245564-4	chr18	53245468	53245668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029394)	promoter-TSS (NM_029394)	-94.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	7.15604423625609	7.09075001242983	7.37306058202915	7.53378045102338	7.44769199173581	7.14459036474702	7.67112800639068	7.29646958941133	0.131955568090973	0.530220301699726	0.786376155995349
Merged-chr7-64342243-3	chr7	64342142	64342342	+	712.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	31853.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	3.9828727094043	3.85852028543416	4.30876827570725	3.58997513638548	3.37634611752932	3.73113950411868	4.09604852710767	3.83400934090283	-0.488189459275752	0.351617424717121	0.658910409408162
Merged-chr19-32491229-4	chr19	32491167	32491367	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010799, intron 1 of 4)	intron (NM_010799, intron 1 of 4)	5498.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	4.12527351417363	3.91488003810708	4.64262539877628	3.99835965243151	3.98849964894168	3.8189246662638	4.06156081535996	3.97875389867559	-0.595516802099154	0.196142718715119	0.497142134936562
Merged-chr13-3526452-4	chr13	3526358	3526558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11617.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	6.82656280064145	6.69549056863868	7.06050862499417	7.49150367645571	6.97734839307047	6.87074641623337	6.88839472050163	6.8229145716578	-0.249906180271431	0.2982599974523	0.610388365253329
Merged-chr10-20054089-4	chr10	20053994	20054194	+	932.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 8 of 29)	intron (NM_008580, intron 8 of 29)	-94826.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	4.45020381978607	4.98015391726377	5.9929876719902	5.79249024066699	4.80554920062729	4.69152757165506	4.48219696654391	4.59741248633446	-1.51871750927052	0.000814850688227759	0.0114106348883265
Merged-chr16-4729209-3	chr16	4729115	4729315	+	909.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136066, intron 1 of 5)	RSINE1|SINE|B4	2854.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	3.93155147909419	3.41964155208332	3.60284758486917	3.61051164938407	3.29805858814065	3.34802397223293	3.5881971737286	3.88759417063354	-0.321551622148527	0.548048693793041	0.797187190409426
Merged-chr18-42511279-4	chr18	42511166	42511366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110344)	promoter-TSS (NR_110344)	-221.0	NM_001039474	56070.0	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	9.27105307626593	9.3314554944944	9.54613551206277	9.33426969098015	9.14957371357537	9.4798403518412	9.37781355020131	9.28160089053539	-0.0602053807466412	0.689903659683922	0.873650535087508
Merged-chr4-126683283-2	chr4	126683183	126683383	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011970, intron 1 of 5)	RMER6A|LTR|ERVK	5640.0	NM_011970	26445.0	Mm.22233	NM_011970	ENSMUSG00000028837	Psmb2	AU045357|AW108089|C7-I|D4Wsu33e|HC7-I	proteasome (prosome, macropain) subunit, beta type 2	protein-coding	2.87957908458651	2.9498197553547	2.81221810655528	2.48342416583571	3.05064320928673	3.05591434869928	3.05208666190198	3.22412494233328	1.38261013077354	0.030021354700144	0.167362939082201
Merged-chr3-88483889-3	chr3	88483784	88483984	+	874.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019390, exon 9 of 10)	exon (NM_019390, exon 9 of 10)	9428.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	3.19648605634988	3.27652204454748	3.13600324721866	2.68323185468169	3.39681605623994	3.36995263864584	3.1246464230989	3.30891153531775	0.831862402165908	0.171406634787093	0.464641920346332
Merged-chr7-97383655-4	chr7	97383558	97383758	+	920.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199035, intron 7 of 12)	intron (NM_199035, intron 7 of 12)	12041.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	4.52199499801501	4.54089303476307	4.64384703366187	4.15506313144135	4.81210110863399	5.08800551152518	4.27351241736128	4.5613946296502	0.552208661138697	0.170150554374001	0.463141350278663
Merged-chr18-50029975-4	chr18	50029892	50030092	+	949.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360935)	promoter-TSS (NM_001360935)	-992.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	4.10596075057272	4.13383203256544	4.26081906711671	4.49908942021739	4.63724361131661	4.80675180684195	4.78253805332452	4.25824938258669	0.814515945403783	0.0444070000725905	0.21487827947853
Merged-chr15-102283825-3	chr15	102283724	102283924	+	951.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4368.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	3.94940631470625	3.88597510809686	4.18091081480422	4.10362827915634	3.93489975209705	4.30644303519695	3.9336051176689	3.84251090779006	-0.0702523700649254	0.871932295229737	0.95183223179801
Merged-chr6-70824659-4	chr6	70824561	70824761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19854.0	NM_010121	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	7.0138336811336	6.86934826603349	6.90173579621045	7.1461921025614	6.90043609784318	6.81644443559527	7.01508700472426	6.38373165112584	-0.266550172555498	0.227562629649177	0.536236827992163
Merged-chr2-155295705-2	chr2	155295608	155295808	+	906.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004721, intron 10 of 11)	intron (NM_001004721, intron 10 of 11)	19344.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	2.8873394888071	3.03838672182143	2.73596681786062	3.09846274266686	3.08879094380125	3.37644223175518	3.30088572934574	3.46000864119449	1.35943954966507	0.0285671776077575	0.162242331041456
Merged-chr2-32350640-4	chr2	32350544	32350744	+	880.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010065, intron 1 of 20)	intron (NM_010065, intron 1 of 20)	2685.0	NM_001301737	13429.0	Mm.44736	NM_010065	ENSMUSG00000026825	Dnm1	AI838169|Dnm|Ftfl|mKIAA4093	dynamin 1	protein-coding	4.69014088299696	4.5457527208498	4.40604676212793	4.11515757350736	5.27685110189287	4.53809106392064	4.47323894511392	4.15410738433953	0.530428480562092	0.241745062669022	0.552255337817522
Merged-chr4-48042895-4	chr4	48042816	48043016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2389.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	7.92534150587057	8.13163312033712	8.2385685707346	7.92041012296716	8.54864650963935	8.51792065212954	8.66797928192285	8.44830314949475	0.625842122271914	0.000118352327193131	0.00233292724931595
Merged-chr9-75038148-4	chr9	75038097	75038297	+	860.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152135, intron 2 of 4)	intron (NR_152135, intron 2 of 4)	465.0	NM_021548	59046.0	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	4.21330399114345	3.87491818561184	4.33462245425724	4.1792447886258	3.91099553712236	3.99968899825796	3.8625668385879	4.16839996389357	-0.454712554211469	0.291647461413305	0.603991115971419
Merged-chr16-30390066-7	chr16	30389960	30390160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1530.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	6.20008872697465	6.5432296488174	6.87966725462933	6.17810217373866	6.37650401830252	6.76182687993176	6.7410981046473	6.79763701143039	0.292240270740564	0.253465765917984	0.564765683276764
Merged-chr6-84020712-4	chr6	84020619	84020819	+	966.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310152, intron 1 of 53)	intron (NM_001310152, intron 1 of 53)	1333.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	5.04748158929121	4.91152819097094	5.42443892793726	5.25874306524733	5.01093709228293	4.96555375542849	5.12032560065035	4.74244066332091	-0.400612249918695	0.220190082935649	0.528002970789744
Merged-chr5-31193176-4	chr5	31193071	31193271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127355)	promoter-TSS (NM_001127355)	-32.0	NM_010122	13667.0	Mm.29394	NM_010122	ENSMUSG00000029145	Eif2b4	Eif2b	eukaryotic translation initiation factor 2B, subunit 4 delta	protein-coding	8.33059774157028	8.28764204774709	8.06360225337161	8.1803265288257	8.17708851615908	8.23432670172654	8.23262907751363	8.20840286729078	-0.00835198141423427	0.956921449610497	0.984757116793997
Merged-chr7-99101894-4	chr7	99101809	99102009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 3 of 14)	intron (NM_178635, intron 3 of 14)	39235.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	7.86880430716677	7.59456998050001	7.540660548267	7.42399365574091	7.4595562267348	7.42645460068095	7.26779929932646	7.50825223256445	-0.251533142007323	0.181179638336748	0.477671882256885
Merged-chr4-8979203-3	chr4	8979155	8979355	+	685.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	227931.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	2.9875264052661	3.15425997050746	3.20064298418887	2.98055845634685	3.91344711752113	3.50264599385261	3.7592518348517	3.38306175276284	2.07032029652289	0.000136767859678782	0.00264322549119631
Merged-chr2-180274132-3	chr2	180274012	180274212	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145851)	promoter-TSS (NM_145851)	-647.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	5.27887092063389	5.18458925396826	4.99474254269494	5.42084769648473	5.08938570825009	4.763369155938	4.93511582435474	5.06043223200425	-0.508054488675661	0.111794823706685	0.369494973839994
Merged-chr8-13624186-4	chr8	13624073	13624273	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 2 of 23)	intron (NM_009025, intron 2 of 23)	53414.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	5.70239493800306	5.3435563482879	5.81394076981208	5.85362234902429	5.42682705415317	5.27076684783223	4.90912359123953	5.22856067289832	-0.819393550427535	0.00784423180784652	0.0662723532167012
Merged-chr4-89354044-4	chr4	89353929	89354129	+	992.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-42997.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	3.33653352869418	3.16382481764362	3.57987397435325	3.28707876583954	3.16037092085746	3.2769730241507	3.09213905902371	2.89378742864649	-0.894431799536386	0.125776452380883	0.393851660904443
Merged-chr18-83870965-4	chr18	83870844	83871044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	215618.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	7.45792940794987	7.50837371325634	7.29298905562801	7.01047312756804	7.43479421695996	7.3146874111487	7.41308018779384	6.7153601987865	-0.0941238451389259	0.686420022630748	0.871787672169905
Merged-chr1-36815292-3	chr1	36815188	36815388	+	859.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 25 of 40)	intron (NM_018872, intron 25 of 40)	36304.0	NM_001289612	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	3.92597809173818	3.91195148623483	4.8743124093004	4.52855638241936	3.7200545677278	3.67940085930786	3.9625197318526	3.92425708524619	-1.44626236001941	0.00436154578212993	0.0428858222442639
Merged-chr3-8982547-4	chr3	8982486	8982686	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-18440.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	5.47711305010809	4.96074233615346	5.19855417989638	5.64000067330785	4.79391974212832	4.80075069048505	5.20348651632754	5.25599250319197	-0.616342600409073	0.0753598845173933	0.29645502904377
Merged-chr14-55458513-2	chr14	55458413	55458613	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20245.0	NM_001037938	28200.0	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding	3.1932526202621	3.11895547557267	3.19370752999336	3.02933968697891	2.89075079881036	2.85843505875589	3.12673890752484	2.89299126164717	-0.78409011813765	0.187933730466381	0.486397310500761
Merged-chr19-3912889-4	chr19	3912793	3912993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144870)	promoter-TSS (NM_144870)	-119.0	NM_001271444	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	8.48101828013677	8.80029967984046	8.57295834968663	8.3899009911868	8.43739037354977	8.3532710457465	8.46755258860541	8.1510592960926	-0.262109491834952	0.125228462055548	0.392747986414269
Merged-chr14-27347477-3	chr14	27347383	27347583	+	608.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	11446.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	3.76559784935685	3.38513557737961	3.62362853111647	2.93285916753759	3.78311164556872	3.5812387780834	3.39202982399962	3.27899822778433	0.205527057127416	0.730551989690973	0.893140720112921
Merged-chr17-87974941-4	chr17	87974830	87975030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010830)	promoter-TSS (NM_010830)	-120.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	8.35101784877985	8.62134012504622	8.35236238959852	8.49136167295743	8.49313461334577	8.42155493965391	8.46708187045106	8.25656735370792	-0.059917887545245	0.705003633666878	0.881563627356675
Merged-chr8-14823385-3	chr8	14823294	14823494	+	733.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 10 of 15)	intron (NM_172910, intron 10 of 15)	-65142.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	2.85352280912494	2.71442527210786	2.77953228270666	3.06398846073474	3.34634468675838	3.22908219172093	3.54565407498637	3.11448940469695	1.75375373554341	0.00742671784284803	0.0635563167480402
Merged-chr8-18849501-4	chr8	18849376	18849576	+	839.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026792, intron 1 of 7)	intron (NM_026792, intron 1 of 7)	3197.0	NM_026792	52123.0	Mm.24117	NM_026792	ENSMUSG00000031467	Agpat5	1110013A05Rik|D8Ertd319e	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	protein-coding	4.09324179958572	4.50223290922763	4.52350584410637	4.36566409990686	4.63722309400044	4.52535859754591	4.54223105588742	4.84147650845175	0.583847152343244	0.116199118172225	0.377134514266601
Merged-chr13-110569251-4	chr13	110569130	110569330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	174186.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	7.03999015426868	7.14000874199681	6.6701192703094	6.72654105196259	7.56418691138777	7.46388833165362	7.042068462845	7.13140578412817	0.57400151372453	0.0103443167390058	0.0809029910082074
Merged-chr13-36506482-2	chr13	36506382	36506582	+	713.150024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 5 of 5)	intron (NM_001039189, intron 5 of 5)	227995.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	2.92553482284163	2.71555471510298	2.86225387169577	2.71936999086388	2.87054108399194	3.09742977200191	3.03229712523086	3.0982325729088	0.976397059037369	0.101323424174322	0.349327869353383
Merged-chr1-105865099-3	chr1	105864987	105865187	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84364.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	3.22865804310576	3.53082202612747	3.5563327905284	3.10914219843131	3.11399547664639	3.6251500258112	3.08920895924972	3.22743149310535	-0.312365215581064	0.592033225700434	0.821919268747471
Merged-chr5-140607249-4	chr5	140607164	140607364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008494)	promoter-TSS (NM_008494)	-77.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	7.8796678959781	8.10341309919538	8.16350894245098	8.21160651269172	7.8165568225408	7.85926064688883	7.82070653774416	7.65896824814195	-0.400682373576419	0.0171338692939496	0.115206091297378
Merged-chr2-164760600-4	chr2	164760500	164760700	+	790.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133763, intron 8 of 12)	MTD|LTR|ERVL-MaLR	-9329.0	NM_026785	68612.0	Mm.89830	NM_026785	ENSMUSG00000001403	Ube2c	1110015A16Rik|D2Ertd695e	ubiquitin-conjugating enzyme E2C	protein-coding	4.19350455022744	4.09989764052021	3.94082986584532	3.7180117681459	4.34568704139087	3.82110961303073	4.75005643285243	4.51502525243343	1.01515534977344	0.026922440387713	0.155985763516539
Merged-chr2-16220764-3	chr2	16220658	16220858	+	702.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 37 of 38)	intron (NM_001310455, intron 37 of 38)	-135546.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	3.40997402993866	3.34361999874872	3.62285148694822	3.77631792054746	3.51061287239738	3.63672392206474	3.39776858250326	3.08394973943799	-0.445455031677909	0.424143396184617	0.716033081066928
Merged-chr12-35831484-2	chr12	35831384	35831584	+	870.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94137.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	3.33950069584732	3.30523805702499	3.16849880228723	3.05528692682994	3.31465417027448	3.39856092902545	3.27243440266312	2.97013902780186	0.131177077687671	0.815259486079934	0.928718235748118
Merged-chr1-154787767-3	chr1	154787633	154787833	+	619.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61813.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	2.49748556980283	2.42630165455616	2.35282611623428	2.346394484108	2.77856971202953	2.73512273520833	2.61869799452907	2.62710162988552	1.56269618352867	0.0199222764943279	0.127738233302862
Merged-chr8-121635751-3	chr8	121635657	121635857	+	686.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080855, intron 1 of 12)	intron (NM_080855, intron 1 of 12)	16176.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	3.18664657112268	3.2942887459547	3.18708351832699	3.36275334306447	2.63425031648473	2.82679274888123	3.05841865615164	3.24025619122651	-1.27434920326184	0.0546016401472199	0.244018970555595
Merged-chr4-19879876-3	chr4	19879779	19879979	+	811.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 7 of 7)	intron (NM_175406, intron 7 of 7)	42687.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	3.80599042636756	3.61322988072216	4.14783898286806	3.82080015187422	3.65052641258323	3.52364387119375	3.58033577257596	3.70245122643089	-0.726167279438107	0.134479172992298	0.408150155634923
Merged-chr12-52424805-4	chr12	52424691	52424891	+	977.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55818.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	5.50538896637395	4.78446486297315	5.00884541648387	5.83979572537869	5.03710479936101	4.91243251123441	4.91153714371146	4.9691679788824	-0.763560282364511	0.042810767745845	0.210396356862183
Merged-chr8-69092998-5	chr8	69092856	69093056	+	787.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007509, intron 1 of 13)	intron (NM_007509, intron 1 of 13)	-3734.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	2.85040741968207	2.81844012688396	2.64485954345894	3.02918785606015	2.95629825598478	3.01997784992149	2.90248071837297	2.97038474788307	0.464088208961189	0.458564295184922	0.74144172337427
Merged-chr7-44866483-4	chr7	44866359	44866559	+	938.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133949, intron 5 of 11)	intron (NM_133949, intron 5 of 11)	3329.0	NM_133949	84113.0	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	5.07640051051893	5.06962409928327	4.47345438637075	4.88744604885254	4.45134870763476	4.78804024601504	4.50047451701959	5.2153118462062	-0.260213849236796	0.509065200085446	0.773879165668528
Merged-chr4-126035563-4	chr4	126035446	126035646	+	937.9916380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252651, intron 7 of 14)	intron (NM_001252651, intron 7 of 14)	10887.0	NM_001252651	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	5.14176814671528	4.50790638266674	4.34171433421666	4.60648242921745	4.59910756601747	4.56671981308068	4.69481462942908	4.13035701240078	-0.358020916389065	0.387653345429123	0.688489915228238
Merged-chr17-83323101-2	chr17	83323001	83323201	+	784.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27830.0	NM_001114361	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	2.97336511052742	2.92915048999566	3.0888894040276	3.07773385047437	2.88307258663148	2.81125424129964	2.90245369415435	3.14063452075364	-0.353738278963286	0.554862862867422	0.80110717476755
Merged-chr13-117224527-3	chr13	117224433	117224633	+	796.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010330, intron 1 of 8)	intron (NM_010330, intron 1 of 8)	3960.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	3.87612487429097	3.27215272050084	3.87677981235512	3.64636348778757	3.27718849577828	3.24458702748436	3.12187654169317	3.26557364375097	-1.61306265258062	0.00497538838458447	0.0473831812049571
Merged-chr3-158061131-4	chr3	158061014	158061214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359763, intron 10 of 13)	intron (NM_001359763, intron 10 of 13)	24432.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	5.2264851529641	5.45975503131002	5.32605239114946	5.66671343681525	5.91188049480076	5.50243674118659	5.4196754272051	5.52657717460331	0.289000677534816	0.334183437277253	0.644805241742718
Merged-chr15-8712686-3	chr15	8712574	8712774	+	791.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1867.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	3.47359153445242	3.49882057529866	3.20980145526358	2.97097143968558	4.1626156973598	3.91706163569141	3.82155291696969	3.47217010619824	1.84925002765391	0.000731055455100227	0.0104797031768856
Merged-chr6-116186693-4	chr6	116186600	116186800	+	816.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 1 of 5)	intron (NM_177412, intron 1 of 5)	6674.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	3.85273924255199	4.27451474423029	3.90902320058545	4.05758001224493	4.45423659994388	3.91599776178299	4.30562789432016	4.15452487719879	0.491063508207844	0.258612678544359	0.570489393947544
Merged-chr8-19601778-4	chr8	19601657	19601857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106660.0	NM_139220	246080.0	Mm.207067	NM_139220	ENSMUSG00000037790	Defb7	BD-7|Defb15	defensin beta 7	protein-coding	5.62921807207251	5.90791334535791	6.11546860417982	5.50525078686844	5.67857480088146	5.54173352910566	5.51899664303813	5.99637754832353	-0.164868563219425	0.573606435704004	0.811888602285473
Merged-chr15-73023077-4	chr15	73023003	73023203	+	982.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029640, intron 6 of 21)	intron (NM_029640, intron 6 of 21)	32709.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	4.74762847880191	4.57847582247279	4.6678128790642	4.84026371183632	4.90599510357584	5.1012862579952	5.00302028431536	4.82102037736929	0.477121960494643	0.148605409988254	0.430423321537467
Merged-chr9-96487639-2	chr9	96487539	96487739	+	800.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	-8964.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	3.21241745988093	3.4761472474545	3.49121638680435	2.85641650398511	3.23650298858915	3.38822144992102	3.26101232299034	3.38496679770135	0.144791354652984	0.805002506468873	0.92516668401763
Merged-chr1-159232979-4	chr1	159232914	159233114	+	985.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011931, intron 1 of 19)	intron (NM_011931, intron 1 of 19)	814.0	NM_011931	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	4.29614555849862	4.32563632588605	4.55698193644783	4.43381573802976	4.76546218716769	4.51881710725787	4.45562820187091	4.59260738739151	0.425065263301337	0.243099934084631	0.554063014163832
Merged-chr11-117780828-4	chr11	117780726	117780926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145439)	promoter-TSS (NM_145439)	-134.0	NM_145439	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	7.456650183939	7.82370503142119	7.92120715900278	7.49697224978055	7.33533436500402	7.58614624979768	7.64942705312665	7.14791345308572	-0.32252340824375	0.122120915324378	0.38731206308755
Merged-chr4-88840223-4	chr4	88840132	88840332	+	897.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1584.0	NM_010504	15967.0	Mm.377088	NM_010504	ENSMUSG00000070904	Ifna4	Ifa4	interferon alpha 4	protein-coding	4.3403649456733	4.66009578457486	4.09050473488815	4.02235294877672	4.82153569045526	4.56108785369188	3.96037376845435	4.85596946753336	0.675122793229384	0.13682551116833	0.411383925802591
Merged-chr11-100695142-3	chr11	100695054	100695254	+	810.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030150, exon 13 of 13)	3' UTR (NM_030150, exon 13 of 13)	9117.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	3.4122343520579	3.7023904074463	3.35068838030652	3.35930622306318	3.76872065656174	3.52738384054403	3.76247234329746	3.58077431139216	0.665927286703848	0.178031361304306	0.473836973534737
Merged-chr17-56819715-2	chr17	56819615	56819815	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009056, intron 1 of 16)	intron (NM_009056, intron 1 of 16)	11293.0	NM_009056	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	3.16301837375134	3.0603964257683	3.10093690753828	3.09253256971636	3.39077851049578	3.2114754860876	3.26719964563036	3.48327500648637	0.904334761578938	0.0898438993592997	0.327346020178914
Merged-chr2-164960791-3	chr2	164960692	164960892	+	945.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355480)	promoter-TSS (NM_001355480)	-54.0	NM_001355481	57138.0	Mm.252987	NM_020333	ENSMUSG00000017740	Slc12a5	KCC2|mKIAA1176	solute carrier family 12, member 5	protein-coding	3.79257395873669	3.85460844904295	3.63231476641791	3.56788186215231	4.02142682038567	3.74902307150305	3.67380936155533	3.97747876782341	0.479771917582023	0.29927216782369	0.611545471309502
Merged-chr11-77786413-4	chr11	77786250	77786450	+	986.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	9115.0	NM_001291212	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	5.58773821825078	5.4158287210278	5.73040554567395	5.71692583983097	4.82366922356874	5.48598726957302	5.11893578626194	5.33707936632513	-0.752984011528866	0.0152004444086361	0.105855829425918
Merged-chr2-148599654-4	chr2	148599551	148599751	+	861.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72964.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	4.4962576942688	4.52270668413765	4.04213461461525	4.46545289319296	4.05572878987851	4.11110460293723	4.54932248238882	4.37381031945184	-0.279568211206324	0.501222203446969	0.769126136091298
Merged-chr6-4983409-3	chr6	4983307	4983507	+	795.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	80087.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	3.26557307155561	3.20386976782405	3.66182288432929	3.38518497391361	3.45623974487554	3.1195203519804	3.19521181623535	2.93700903782799	-0.693106942526923	0.247377492978735	0.558472598963919
Merged-chr3-98027532-4	chr3	98027386	98027586	+	890.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	13948.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	3.6493254888302	3.26257370159144	3.99460913508731	3.62193519831654	3.31788958577873	3.35994159846403	3.47797969085793	3.37276107246756	-0.908009205618048	0.0940434383392208	0.335476295148992
Merged-chr2-154765846-4	chr2	154765721	154765921	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25289.0	NM_001139512	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	4.01119718493663	4.15251959149912	4.4672382677295	4.06370453606729	4.81318237444658	4.80120269333464	4.40325613628056	5.11808009098019	1.41612624659695	0.000328888117954602	0.00546960919343238
Merged-chr4-3810422-3	chr4	3810307	3810507	+	811.827759	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25248.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	3.86337729225808	4.22664759217293	3.86389978636401	3.6758040867952	4.51131309587142	4.59310180630095	4.01089119244765	4.38287063408246	1.21029345550152	0.00587790344931645	0.0534675130503381
Merged-chr4-133651670-4	chr4	133651594	133651794	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J-int|LTR|ERVL-MaLR	-18265.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	5.72751971661819	6.07040222491987	5.8413653733564	5.88416997322627	5.14039877311597	5.0804050717237	5.57603764049858	5.09716363940886	-1.12235116797879	0.000113031863693956	0.00224860118107102
Merged-chr8-70700073-4	chr8	70699984	70700184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010592, exon 1 of 1)	3' UTR (NM_010592, exon 1 of 1)	2345.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	6.7927000246599	6.77633617202979	6.27460705398588	5.82374173156334	6.73044486730942	6.67181454458177	6.63407128413819	6.55616320345296	0.269803663131349	0.334810811057631	0.645228068776801
Merged-chr8-72475205-4	chr8	72475107	72475307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138585)	promoter-TSS (NM_138585)	26.0	NM_001359024	27967.0	Mm.30136	NM_138585	ENSMUSG00000052488	Cherp	5730408I11Rik|D8Wsu96e|DAN16|Scaf6	calcium homeostasis endoplasmic reticulum protein	protein-coding	8.02461113610727	8.33861513435679	8.12008386082782	8.04538226964108	8.55497081689133	8.7315297464367	8.42898664684121	8.32843431821916	0.48520470263564	0.00457104846571797	0.0444302415323418
Merged-chr8-22476583-3	chr8	22476483	22476683	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011394)	promoter-TSS (NM_011394)	-117.0	NM_011394	20516.0	Mm.323901	NM_011394	ENSMUSG00000037656	Slc20a2	MolPit2|Pit-2|Pit2|Ram-1|Ram1	solute carrier family 20, member 2	protein-coding	5.59112429968427	5.28092908895538	5.98852567608323	5.47304742056304	5.37437633690819	5.51131785379884	5.61425687396776	5.36189294593327	-0.228554243350876	0.445216551540053	0.731298032078032
Merged-chr2-118491496-5	chr2	118491465	118491665	+	880.534973	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11869.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	3.65864344949944	3.35588746698277	4.37852608567358	3.63448480025002	3.58215756373811	4.43892764727824	3.70258809001662	3.92700270751419	0.384134466994261	0.50429239632057	0.770655921364685
Merged-chr1-91298290-4	chr1	91298210	91298410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016717)	promoter-TSS (NM_016717)	-28.0	NM_016717	50880.0	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	8.77798325141853	8.82827864063651	8.76279038647645	8.93972687519217	8.64427491194948	8.80412890334961	9.12504493445567	8.71054765832651	0.000843699608220779	0.995954584014347	0.998543856884531
Merged-chr14-69825050-2	chr14	69824950	69825150	+	998.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15357.0	NM_028560	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	3.6713494844337	3.15607687358061	3.2096085151646	3.24553417104825	3.16739676278689	3.55252572481802	3.25761461282851	3.00903837214755	-0.268200890768259	0.645643605747464	0.850934142345746
Merged-chr3-90125955-4	chr3	90125843	90126043	+	968.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029937, intron 7 of 39)	intron (NM_029937, intron 7 of 39)	21811.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	5.32631203736225	5.54459222451178	5.3891323427801	5.53272186962049	5.83897698874065	5.50389664851808	5.81150489342261	5.11801521394283	0.259974530872151	0.390442924243367	0.690570939884669
Merged-chr15-11972057-4	chr15	11971947	11972147	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4985.0	NR_040447	73339.0	Mm.231975	NR_040447	ENSMUSG00000099349	1700047G03Rik	-	RIKEN cDNA 1700047G03 gene	ncRNA	5.17884583381866	5.33945986429817	5.57820266253241	5.58846179669121	5.31090233141117	5.17936241699214	5.31039052014575	5.14234471633711	-0.362084877215118	0.219836223043105	0.527445394545628
Merged-chr15-77537680-2	chr15	77537583	77537783	+	815.533325	f0_c57.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	-4368.0	NM_175391	108956.0	Mm.86391	NM_175391	ENSMUSG00000044309	Apol7c	2210421G13Rik	apolipoprotein L 7c	protein-coding	3.6952266187593	3.78013173449092	3.75982854969333	3.37747533698135	4.74165205879195	4.81449189446673	4.16819030983891	4.35638861029722	2.37412218030141	9.80024234963187e-08	4.20730669604612e-06
Merged-chr8-35971671-3	chr8	35971572	35971772	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-88715.0	NR_046181	330737.0	Mm.381743	NR_046181	ENSMUSG00000109761	5430403N17Rik	5430403N17	RIKEN cDNA 5430403N17 gene	ncRNA	5.69753766187548	5.22947765772786	5.77368319769126	5.93488634059015	3.35099036296232	3.77584221762893	3.70084425061507	3.7910751873667	-7.65587180852795	1.62702325638142e-13	2.03890648531642e-11
Merged-chr6-134262233-4	chr6	134262147	134262347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 7 of 8)	intron (NM_001303102, intron 7 of 8)	-134082.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	7.94631697375499	8.32229036186194	8.01535615918958	7.67910339856133	7.79161770413751	8.09669582506442	7.84538375222027	7.64664433192079	-0.199541369855193	0.326978702872937	0.638589065790286
Merged-chr12-116435459-4	chr12	116435380	116435580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133762, intron 17 of 28)	Lx8|LINE|L1	30078.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	6.11827033021847	6.11825058116852	6.52779288199187	6.32745465398876	6.95090306521999	6.80020416802016	6.90067459773502	6.90676472139861	0.876360271296614	4.09874046920714e-05	0.000952167910762711
Merged-chr9-57521139-4	chr9	57521001	57521201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007747)	promoter-TSS (NM_007747)	-131.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	6.59635981173388	6.81609159619899	6.40601883903844	6.29271408311922	7.04539815027422	7.14757196892114	6.31583663125346	6.95498704173845	0.523308760732069	0.041795082587692	0.207095870762919
Merged-chr9-114957181-4	chr9	114957084	114957284	+	852.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23197.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	3.87210383299821	3.85299236711863	3.45727301421102	3.87168030804663	4.29161539039175	4.04513091425381	4.16754873206846	3.64919191705454	0.778754924866887	0.107360641221393	0.361382260156614
Merged-chr16-4908108-4	chr16	4908014	4908214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 2 of 17)	intron (NM_001357062, intron 2 of 17)	22014.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	6.88773295413237	7.10592136618287	6.69884925363051	6.9950416273946	6.89514606093712	6.96737693105794	7.24547969775561	6.98815912436438	0.124866666613594	0.542707538015163	0.793917205662524
Merged-chr7-113514981-4	chr7	113514885	113515085	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360668, intron 1 of 12)	intron (NM_001360668, intron 1 of 12)	1151.0	NM_001360669	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	5.1694330341505	4.84613009362423	4.96825237990292	5.24068651619771	5.24489873692651	5.06970724451595	5.08158151783976	5.25673697568216	0.172841922744048	0.57975104697153	0.815474743074892
Merged-chr9-121983613-2	chr9	121983513	121983713	+	563.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153540, exon 2 of 2)	exon (NM_153540, exon 2 of 2)	12413.0	NM_001289559	215494.0	Mm.402151	NM_153540	ENSMUSG00000066235	Pomgnt2	Ago61|C85492|Gtdc2	protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2	protein-coding	1.98957368387973	1.94508669212993	1.9897403480504	1.88565702172824	2.1439472248815	2.4474211671089	2.26725109543847	2.33811588756338	2.49377849749623	0.0021225328336413	0.0244822175604852
Merged-chr5-137600758-4	chr5	137600651	137600851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001254762)	promoter-TSS (NM_001254762)	-43.0	NM_001254762	68929.0	Mm.41355	NM_030037	ENSMUSG00000037221	Mospd3	1190005J19Rik|5133401H10Rik|Gtig2|R124	motile sperm domain containing 3	protein-coding	6.84590431600807	6.67063697411514	6.21010633693212	6.33681005178895	7.21224979627424	7.01012286290811	6.95224701593358	7.06454462822937	0.756491376091156	0.000811958221004223	0.0113746062217791
Merged-chr3-103587873-4	chr3	103587770	103587970	+	981.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276676, intron 3 of 6)	intron (NM_001276676, intron 3 of 6)	11744.0	NM_001276681	54524.0	Mm.88818	NM_018800	ENSMUSG00000027849	Syt6	3110037A08Rik|AW048930|sytVI	synaptotagmin VI	protein-coding	4.92905561262119	5.09970356894757	4.89376463725644	5.02803174384837	4.95084965313189	5.1712823509006	4.90629302305561	4.73527214626861	-0.0930748499601547	0.771556487755063	0.910421153736282
Merged-chr6-34059965-4	chr6	34059844	34060044	+	921.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028886, intron 6 of 19)	intron (NM_028886, intron 6 of 19)	30496.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	4.2974882229455	4.7123319343902	4.87231889847665	4.73480734278084	4.60689650396657	4.52786241660131	4.78135741209441	4.80125748716047	0.0147162313999875	0.967631865793274	0.988556045979739
Merged-chr19-5850369-4	chr19	5850258	5850458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026169)	TTS (NM_026169)	-4878.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	5.73861056129748	5.57810438650855	5.46826341508134	5.10719078106781	5.94029146719301	6.03009660881418	5.63531129601541	6.03783271274024	0.745140583963462	0.00969863241390448	0.0772277611130224
Merged-chr10-75492108-4	chr10	75492039	75492239	+	944.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	25242.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	4.85147211558363	4.16138292581586	5.19223884425524	4.77900336306436	4.53582166120147	4.13616943713158	4.3650335382484	4.51541961206042	-0.855302582148561	0.0472533041620586	0.223796855210005
Merged-chr11-115491826-4	chr11	115491685	115491885	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015807)	promoter-TSS (NM_015807)	29.0	NM_015807	50773.0	Mm.390379	NM_015807	ENSMUSG00000020736	Nt5c	Dnt|Dnt1|Umph-2|Umph2	5',3'-nucleotidase, cytosolic	protein-coding	4.78926198852943	4.93788687542962	4.62936103063135	5.11895491204499	4.92472435784123	4.62650006323014	4.97403245865014	4.70916274747536	-0.156859277480897	0.653726021839496	0.855155284739189
Merged-chr15-74896508-4	chr15	74896439	74896639	+	757.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14835.0	NM_025929	67038.0	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	3.71272988351669	3.74972771898124	3.41848758128739	3.80945948493355	3.76708958115685	3.93469164688429	3.64514142958556	3.90634156970238	0.367643899982529	0.438298263508222	0.726330030804391
Merged-chr19-59342062-2	chr19	59341972	59342172	+	566.0	f0_balb.idr|f0_c57.idr	intron (NM_001033222, intron 1 of 4)	intron (NM_001033222, intron 1 of 4)	3708.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	3.35476493095448	3.23604737055715	3.29876692886623	3.3392657631643	3.60463323177184	3.00504162890999	3.49583140319675	3.23815211938616	0.20136322888087	0.720539599086766	0.888306916367551
Merged-chr7-127876878-4	chr7	127876721	127876921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172749)	promoter-TSS (NM_172749)	15.0	NM_146259	244219.0	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	5.57652114098766	5.95583940878309	5.62934936458517	5.11357581474427	5.63263389516321	5.45920957757846	5.43957169820867	5.5997227659723	-0.087948339323186	0.779143186704814	0.913841690258744
Merged-chr16-91865215-4	chr16	91865078	91865278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 26 of 28)	intron (NM_001110275, intron 26 of 28)	66452.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	5.40120569112763	5.18154119725437	5.98778670675835	6.10559619326002	5.50388353585941	5.1508124142605	5.79130872129642	5.74835446828077	-0.275581246551241	0.427434851483262	0.718573105661953
Merged-chr18-68196091-4	chr18	68196003	68196203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-31843.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	6.74534992608612	6.09640558915043	6.91334303376728	6.99058181091776	6.29266326270887	6.20548971063836	6.23537823787001	6.61168097954083	-0.56885239363132	0.0348656385295658	0.184862410839365
Merged-chr11-83556492-4	chr11	83556401	83556601	+	891.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22135.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	4.69100162429192	4.47962036361425	4.6211033023754	3.91398618257574	4.29954262172298	4.5121896729256	4.27188565382819	4.46366284111699	-0.135179219208138	0.752106979842892	0.902358499810157
Merged-chr2-117346715-4	chr2	117346621	117346821	+	828.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-3844.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	4.48754967820847	3.66608528306339	3.86199075899445	3.5565642148825	4.05221659763698	3.98583275629075	4.25319474855036	3.85976392202139	0.283200348655329	0.575730587775032	0.813185666420437
Merged-chr13-113381937-4	chr13	113381824	113382024	+	886.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	120920.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	4.43738825248603	4.36084245361792	4.47921302688414	4.88606458740132	4.40191666773404	4.23192988425454	4.2874287468309	4.34893732135621	-0.591781599551215	0.136069393535256	0.410490184889333
Merged-chr8-77509241-3	chr8	77509150	77509350	+	774.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-7806.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	3.7026784276408	3.41602696199123	3.75200099466696	4.15435720736514	3.13603427878176	3.71849333446106	3.47410127365284	3.29714347481554	-1.21407365122172	0.0339117337673048	0.181734926804923
Merged-chr3-95530011-4	chr3	95529905	95530105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021281, intron 2 of 7)	intron (NM_021281, intron 2 of 7)	3219.0	NM_001267695	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	6.34156493106943	6.50510706325814	6.56824433282765	6.77998919076292	6.38468178398235	6.59258274267929	6.73871408227675	6.53130806636659	-0.0172263400637689	0.939212081277917	0.978014435422147
Merged-chr3-96661031-4	chr3	96660897	96661097	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302471, intron 27 of 29)	intron (NM_001302471, intron 27 of 29)	-9134.0	NM_001356539	213121.0	Mm.39732	NM_001081139	ENSMUSG00000038354	Ankrd35	4732436F15Rik	ankyrin repeat domain 35	protein-coding	5.02300322981905	5.52464073419644	5.1526399171424	4.76773919636659	4.93793499544488	4.81208085217936	4.85736727930519	5.0204264931531	-0.440704919181748	0.209715620536352	0.514204207859352
Merged-chr1-72142104-4	chr1	72141994	72142194	+	754.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70213.0	NM_001005423	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	4.11028061843987	3.99219681680282	4.24894606695938	4.05843937708797	4.29098673555689	4.02340115214921	4.31331798029524	4.48370758808267	0.475228225944778	0.237777551646406	0.547975404670062
Merged-chr2-19659134-3	chr2	19659044	19659244	+	878.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027715, exon 1 of 1)	exon (NM_027715, exon 1 of 1)	1082.0	NM_027715	71198.0	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding	3.61137559709014	4.16167003095539	3.83228894680431	3.72745347783281	3.95070080017355	3.90028426685693	3.76538055647253	3.77843617628506	0.0181480611641965	0.968916135974147	0.988837646318788
Merged-chr6-108327822-4	chr6	108327720	108327920	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	114724.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	4.95123097152712	5.22368821327763	5.05713496768554	5.2584054940595	4.91448307226115	5.19673682891549	4.99885576741178	5.01967231677671	-0.215310262155621	0.489137085333531	0.761611073127606
Merged-chr5-132437114-1	chr5	132437014	132437214	+	607.333313	f0_balb.idr	intron (NM_177047, intron 1 of 19)	intron (NM_177047, intron 1 of 19)	105229.0	NM_177047	319974.0	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	3.34639961383099	3.02105509853105	3.30056244592512	3.08682921039752	2.47669955122615	2.89428843082727	2.54959686223681	2.55432355932954	-3.17505377644482	0.000149759862668214	0.00284944059472354
Merged-chr15-101221822-4	chr15	101221729	101221929	+	869.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045326, exon 3 of 3)	non-coding (NR_045326, exon 3 of 3)	582.0	NR_045996	105968.0	Mm.120798	NR_045996	ENSMUSG00000115944	AU021063	-	expressed sequence AU021063	ncRNA	4.39616557003902	4.35440707508967	4.01581288676081	3.60571367200369	3.94829490347174	3.86483023908071	4.0463888785763	4.10833446155534	-0.336708283804023	0.483650611284043	0.757942401688951
Merged-chr11-104315931-2	chr11	104315831	104316031	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285454, intron 6 of 9)	intron (NM_001285454, intron 6 of 9)	84495.0	NM_001285454	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	3.15318600180501	2.88106937757385	3.03096295809655	3.13382666723838	3.06129426383431	3.32330712020389	3.14174250721737	3.31615326698173	0.593218352759773	0.295948167679573	0.607840340861675
Merged-chr13-44507254-4	chr13	44507146	44507346	+	696.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67519.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	3.97300791278044	4.29456415743331	3.97360913874215	3.63779842066097	3.9912036168383	3.99742987817934	3.44671759367543	3.92289742101805	-0.346931268876789	0.489752237449746	0.761935533079111
Merged-chr12-102390128-4	chr12	102390004	102390204	+	876.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001161365, exon 10 of 10)	exon (NM_001161365, exon 10 of 10)	49709.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	3.84190918057493	3.45225358604567	3.84249541962916	3.59042961877226	3.69332087682928	4.18695186180682	3.44339387194277	3.6333180838474	0.235984681676184	0.645718315694822	0.850934142345746
Merged-chr9-95578636-1	chr9	95578536	95578736	+	550.0	f0_balb.idr	Intergenic	Intergenic	18819.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	3.13093139198164	3.02510853149679	3.18755103688735	3.17623028828565	3.10587167072481	3.11857308523805	3.0617117802519	3.00944125849092	-0.233906901831084	0.675863374680526	0.866938407063941
Merged-chr14-31374539-4	chr14	31374449	31374649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011894, exon 9 of 9)	3' UTR (NM_011894, exon 9 of 9)	37911.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	6.31034315658158	6.32920804320581	6.27464427773742	6.5354490479002	6.01025413231411	5.72057169205348	6.38294403123511	6.4441585060943	-0.309165244035477	0.233182540026968	0.542798744737379
Merged-chr11-109473272-4	chr11	109473153	109473353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028710)	promoter-TSS (NM_028710)	-24.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	5.99848093837563	6.11178154921908	6.17497073436526	6.15968662836689	6.67784545713699	6.20094160275865	6.51147539645311	6.57042899114626	0.589817893561676	0.0100181305857205	0.0790236901817181
Merged-chr13-23689141-4	chr13	23689035	23689235	+	747.766663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023422, intron 1 of 1)	intron (NM_023422, intron 1 of 1)	4936.0	NM_023422	68024.0	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	4.27509841633214	4.27276047281027	3.87638082615343	3.5472308373158	4.23363964311502	4.40525275518433	4.59025911601107	4.08864096912989	0.806436629243119	0.0840633056188089	0.3153389898433
Merged-chr8-86873656-3	chr8	86873594	86873794	+	843.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	11564.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	3.2516460917103	3.45192826937758	3.25206649263532	3.26570895659005	3.18553145208357	3.42264372713504	3.40173317019014	2.84556852655911	-0.278523277180755	0.636068764193343	0.846003230633997
Merged-chr10-127599619-4	chr10	127599503	127599703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	21545.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	7.14343731353211	7.66737368521066	7.35802221125304	7.20139499613686	7.07042752479122	7.121057321497	6.99990459804416	7.11619488108992	-0.380425728972171	0.0602041529231065	0.259054008034929
Merged-chr13-35950017-4	chr13	35949910	35950110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie1a|DNA|hAT-Charlie	-17896.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	5.34878350223439	5.78180045580421	5.71344922434353	6.02821980977685	5.57782437829924	5.28347123947233	5.73185573348956	5.58162115074683	-0.34015288283401	0.249762270799852	0.56079709388545
Merged-chr9-64253687-4	chr9	64253529	64253729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008927)	promoter-TSS (NM_008927)	-24.0	NM_008927	26395.0	Mm.248907	NM_008927	ENSMUSG00000004936	Map2k1	MAPKK1|MEKK1|Mek1|Prkmk1	mitogen-activated protein kinase kinase 1	protein-coding	7.59068437868588	7.82117975406485	7.32939200366769	7.34221418856999	7.78313596827056	7.74266404488255	7.62276269918229	7.6382985423434	0.220806194314479	0.248397945886874	0.55951124300554
Merged-chr6-73726678-3	chr6	73726596	73726796	+	640.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-255675.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	3.19268868953931	2.86816491147472	2.96647612237064	3.69874538055892	2.90850324052099	2.79930124181842	2.68583337322209	2.61370295523779	-2.10365189048823	0.00536842491566025	0.0500846252009617
Merged-chr15-99474672-4	chr15	99474602	99474802	+	940.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029236)	promoter-TSS (NM_029236)	28.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	4.72947642357799	4.90971231964441	4.27433715378491	4.12154487956235	5.111162682351	4.78644562479215	4.7817806008209	5.12082631795805	0.883639522996449	0.0253710595808186	0.150052899867311
Merged-chr15-91192055-4	chr15	91191949	91192149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358967)	promoter-TSS (NM_001358967)	-42.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	6.63673191189927	6.17787388455979	6.33025770959536	6.61338042114888	6.19221759022085	6.43101562603698	6.38596694983365	6.08391578388818	-0.275319692107747	0.250309849608523	0.561389065925735
Merged-chr19-53421483-4	chr19	53421347	53421547	+	987.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30813.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	5.59791025997987	5.67318357208905	5.84302170989493	5.45648108455013	5.14080718569577	4.94950994484131	5.17247892374379	5.12539137683685	-0.962569451002548	0.00115267443170335	0.0150931224014372
Merged-chr11-68589640-2	chr11	68589540	68589740	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177779, intron 3 of 6)	intron (NM_177779, intron 3 of 6)	2603.0	NM_177779	276920.0	Mm.123046	NM_177779	ENSMUSG00000045915	Ccdc42	A530001H01Rik	coiled-coil domain containing 42	protein-coding	3.30098396844133	3.4611919711335	3.11249809315731	3.01513591788358	3.49160354343212	3.52950140863535	3.22977963734446	3.46447559173731	0.745100341717811	0.171880822353975	0.465124394984604
Merged-chr7-24972723-4	chr7	24972622	24972822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010261)	promoter-TSS (NM_010261)	6.0	NM_010261	14470.0	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	7.47238681829362	7.5438029597734	7.15006187983477	7.39938755831536	7.37591100130139	7.38549731465391	7.29099111207183	7.24785485330755	-0.0998992634882949	0.586724705033673	0.818855440601026
Merged-chr7-81167293-3	chr7	81167190	81167390	+	584.083313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001004184, intron 14 of 17)	B2_Mm2|SINE|B2	-46514.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	3.74270956555692	3.69404951213265	3.74323689393645	3.49670375322511	3.79525001323685	3.75091567119455	3.77987338416732	4.29614825147874	0.762092864439742	0.106357125247852	0.359484962154748
Merged-chr6-125581458-4	chr6	125581375	125581575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 6 of 51)	L1_Mur3|LINE|L1	28527.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	5.90140874112484	6.24137088708279	6.34200734451751	5.70155131709506	6.39127783930777	6.6346807542989	6.50441312949432	6.16746466618726	0.570520724262922	0.0300599664695697	0.167455190104258
Merged-chr19-37963606-4	chr19	37963492	37963692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 19 of 53)	intron (NM_001302140, intron 19 of 53)	79985.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	6.59884944194522	6.79787343628584	6.23771934139332	6.49140619321437	6.70642787846415	6.55419746764192	6.45148171667958	6.99578432860493	0.212031601884343	0.372647401380993	0.676386604956396
Merged-chr2-142768948-3	chr2	142768844	142769044	+	881.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 12 of 26)	MER2B|DNA|TcMar-Tigger	132520.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	3.78835943435018	3.82232398369555	4.02822458419267	4.2497414954214	3.88639271647207	3.79730481183051	3.82465308607398	3.42670381407779	-0.705405631708258	0.150436116149923	0.433044538821344
Merged-chr19-10949305-4	chr19	10949202	10949402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023731)	promoter-TSS (NM_023731)	-36.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	7.48957684254118	7.42570084156276	6.74112404343656	6.92359104098103	7.49509438486231	7.37696197948676	7.42670707843939	7.40238071148071	0.33562149064745	0.135764887748874	0.410170158959129
Merged-chr18-24208207-4	chr18	24208172	24208372	+	763.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361200, intron 1 of 12)	(TG)n|Simple_repeat|Simple_repeat	2278.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	3.44871643403558	3.63163347502573	3.67707113414809	3.86392987157285	3.53834951774877	3.94404880334554	3.55439599720114	3.86901623648858	0.176364258827106	0.723752233139098	0.88974079900073
Merged-chr8-66386241-4	chr8	66386170	66386370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166375)	promoter-TSS (NM_001166375)	-31.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	6.33696533107625	6.27190963998326	6.52281498154436	6.4715999831743	6.05501103037494	6.40086065417122	6.45797928232495	6.09543899990718	-0.227402153013151	0.330215994654736	0.641648008542111
Merged-chr5-129874126-4	chr5	129874014	129874214	+	907.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_145487, intron 2 of 8)	intron (NR_145487, intron 2 of 8)	4974.0	NR_145486	18682.0	Mm.3159	NM_011079	ENSMUSG00000025537	Phkg1	Phkg	phosphorylase kinase gamma 1	protein-coding	3.84297254924012	4.01875501676262	4.00420334233353	4.38059878223215	4.10693149347894	4.02122833368722	4.4768380375041	3.95054346079948	0.154418906244823	0.734397246477656	0.895037123607549
Merged-chr1-78485474-4	chr1	78485388	78485588	+	885.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001278075, intron 1 of 17)	MLT1F2-int|LTR|ERVL-MaLR	3409.0	NR_102758	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	4.18668938375067	3.97829602936209	4.09074916084592	4.53760334694629	4.25229456935053	4.31294739953464	4.34098790850441	4.18478576485513	0.0851723284825149	0.839998996339112	0.939166584762349
Merged-chr13-52041547-4	chr13	52041440	52041640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55201.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	5.64111866671508	5.4024769213207	5.47698595442943	5.61923797690091	5.89013366107349	5.86641800458009	5.6638409081683	5.55832194827155	0.357061688668973	0.180176783610481	0.476528193832365
Merged-chr2-122375609-4	chr2	122375503	122375703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6685.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	8.27536442334304	8.43650144135067	7.96291448151187	7.76067998107963	8.42475250702011	8.48253231387995	8.31449399517255	8.45025045011134	0.368157292464756	0.0578500418654709	0.252496206152953
Merged-chr13-5785670-4	chr13	5785552	5785752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR40a|LTR|ERVL	72440.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	7.37297271413722	7.49724274145455	6.75941122577209	7.09883542610862	7.27431094195827	7.31023047319965	6.95112212960119	6.75460912538976	-0.15816111190056	0.51071281095367	0.774914778428754
Merged-chr16-52061334-4	chr16	52061230	52061430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	29781.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	7.51574208427375	7.81129868064824	7.87997654218863	7.88301788185768	7.73186186417293	7.37739902360571	7.50764916025049	7.3735037223292	-0.356887311817949	0.0593413364853698	0.256716973420608
Merged-chr2-30783532-4	chr2	30783427	30783627	+	982.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	18210.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	4.86426960015936	4.74451737011998	4.58653549283656	4.7215588754564	4.97437189435386	5.10591070023793	4.91073238739124	4.8255835986384	0.457767301878737	0.158635039473569	0.445651950692234
Merged-chr12-24593376-4	chr12	24593263	24593463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145890, intron 6 of 13)	intron (NM_145890, intron 6 of 13)	12644.0	NM_145890	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	7.38928692232011	7.74142837249218	7.33918110921394	7.67485252805142	7.36975617976841	7.60737823571825	7.53130521039686	7.20156604958741	-0.162713779230205	0.408936518429808	0.704752613561458
Merged-chr15-102136289-4	chr15	102136180	102136380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033277)	promoter-TSS (NM_001033277)	-65.0	NM_001033277	223918.0	Mm.385009	NM_001033277	ENSMUSG00000036966	Spryd3	BC008150	SPRY domain containing 3	protein-coding	8.07533334883201	7.84659345946651	7.44619041726999	7.88726503862677	8.0207040522018	8.05039363926251	7.98709124946964	7.9252329937371	0.207849044486154	0.261223286479263	0.573133971651176
Merged-chr16-45644661-3	chr16	45644567	45644767	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145389, intron 2 of 5)	intron (NM_145389, intron 2 of 5)	9451.0	NM_145389	212998.0	Mm.97511	NM_145389	ENSMUSG00000033187	BC016579	-	cDNA sequence, BC016579	protein-coding	4.22929068841839	4.16224803346176	4.49896400056487	2.9562908178152	7.46249064442342	7.65306303898465	7.75567715037236	6.98869892203554	7.12057550581564	7.59639643719189e-61	1.8023463400096e-56
Merged-chr4-134913617-3	chr4	134913520	134913720	+	916.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027935, intron 1 of 6)	B2_Mm2|SINE|B2	1296.0	NM_027935	71817.0	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	3.64205066987731	3.60497043530954	3.64254903040496	3.2233026148068	4.05155247258223	3.97249913951018	3.83296640770238	3.79884948461546	1.21594898478823	0.0114806152633145	0.0870613743114067
Merged-chr12-69364197-4	chr12	69364106	69364306	+	965.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7030.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	5.40544569948602	5.52286904418746	5.32182324927044	4.77490896330983	5.59403262847761	5.34252428635087	5.03964113190258	4.86928951014846	-0.0444882131494948	0.902326943537586	0.963744328972473
Merged-chr6-146209556-2	chr6	146209456	146209656	+	856.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	275434.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	3.42357511459861	3.30228279329691	3.62795165447389	3.86414477353802	3.32432709950871	3.29272661347644	3.1718271424459	3.30679368533879	-1.08200764988859	0.0515760595981708	0.236024967605645
Merged-chr9-51076040-3	chr9	51075955	51076155	+	738.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033534, intron 2 of 7)	intron (NM_001033534, intron 2 of 7)	1039.0	NM_001033534	244864.0	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	3.07816837477488	3.32036470324109	3.01896480422569	3.23392158839475	2.81196878493926	2.92859955877503	2.74271227873681	3.13379567565513	-1.12711202715701	0.0717830521766104	0.287856105401631
Merged-chr12-71016613-4	chr12	71016498	71016698	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045055)	promoter-TSS (NR_045055)	631.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	4.80145863301485	4.61748710696472	4.80226719518733	4.56918532899059	4.70528210052011	4.8297702160171	4.38590567523246	4.09035164998974	-0.341051052302954	0.386030605265494	0.687395803472158
Merged-chr15-99121053-4	chr15	99120949	99121149	+	863.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	-5796.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	4.28398790949722	4.16825646059214	3.80492498419182	3.88264444846979	3.64748024037907	4.14348427829925	4.37785221386116	4.06439488691695	0.0905701190299528	0.847518537664206	0.942321253278773
Merged-chr3-37421386-3	chr3	37421294	37421494	+	785.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021343, intron 1 of 15)	intron (NM_021343, intron 1 of 15)	1444.0	NM_021343	57815.0	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	3.82909503024984	3.5412261793423	3.73090601837221	3.83512960353168	3.47176016055382	3.4266755668529	3.5535364996261	4.15876511791335	-0.15984043132411	0.760389763710059	0.906091991304471
Merged-chr6-97456830-1	chr6	97456730	97456930	+	920.5	f0_balb.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	2456.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.09134361813156	4.5658577195048	3.99383922325151	4.21319253189033	3.94709026606434	4.3535732272605	3.63461889439878	3.88562855392194	-0.673587372761212	0.154381818454987	0.43965525549362
Merged-chr2-140783115-4	chr2	140783026	140783226	+	862.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 3 of 18)	MLT1H|LTR|ERVL-MaLR	-111650.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	4.29107915213727	4.56672137076675	4.46470312790986	4.56687564766434	4.30072913310509	4.27059698176868	4.31811676484363	4.46184070608677	-0.345701915402668	0.35696746730649	0.663238634370609
Merged-chr4-126537008-4	chr4	126536895	126537095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3537.0	NM_153177	76850.0	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	6.39045683771992	6.83324956638888	6.56435400653674	6.8110958271309	6.55148647224306	6.39167688499942	6.82951821896321	6.36838260692233	-0.177517480281893	0.44594716174494	0.731738237991726
Merged-chr5-125340923-6	chr5	125340756	125340956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001205082, exon 1 of 12)	exon (NM_001205082, exon 1 of 12)	238.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	5.49724097034966	5.68876111959972	5.6346226068541	5.33442629066814	5.48225123418835	5.8592909947803	5.55365616048053	5.92832792321549	0.299184820100927	0.289267193664147	0.601283461665752
Merged-chr2-22826432-4	chr2	22826317	22826517	+	973.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 4 of 13)	ORR1E|LTR|ERVL-MaLR	52090.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	4.9068351748153	5.09700613556767	5.83453015004338	5.60581641912965	5.113743580531	5.08772235813405	4.88447713614084	5.25327014559606	-0.600536755944311	0.0899327713703631	0.327456185436444
Merged-chr1-86417142-4	chr1	86417052	86417252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-9177.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	6.99704408272715	6.98963499442682	7.03550724715743	7.1952212712222	6.98694205657504	6.81409153439494	7.27260037242078	6.98067059259308	-0.0550704551542234	0.783395688370287	0.915636043192861
Merged-chr2-146214916-1	chr2	146214816	146215016	+	606.0	f1_balb.idr	Intergenic	Intergenic	-7081.0	NM_016889	53626.0	Mm.379070	NM_016889	ENSMUSG00000068154	Insm1	IA-1	insulinoma-associated 1	protein-coding	2.36641970866791	2.5526290344729	2.36661121393168	2.38425269605862	2.7028166956172	2.81152215916407	2.63294787546398	2.70212052268189	1.54603326309035	0.0223224201231144	0.137780542331166
Merged-chr8-33968478-4	chr8	33968400	33968600	+	948.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-38637.0	NM_001042675	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	5.25277948027739	5.31946042013217	5.33838435571355	5.58740422328443	4.57986952016262	4.85468040942857	4.89827162994541	4.91846219143456	-1.13494729627277	0.0004049474731488	0.00650796030509335
Merged-chr12-32230779-4	chr12	32230678	32230878	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22129.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	5.87815534907945	5.9138772897513	5.29917445755829	5.43124237028547	5.63711644446189	5.74432558721915	5.76204492278214	5.07871616456984	-0.115696747630093	0.718350826001546	0.887534808097726
Merged-chr6-50601816-3	chr6	50601701	50601901	+	864.922241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5211.0	NM_027564	70821.0	Mm.157323	NM_027564	ENSMUSG00000029828	4921507P07Rik	TISP74	RIKEN cDNA 4921507P07 gene	protein-coding	4.01067658881598	3.93243343469971	4.05730511901211	3.88640103119606	4.34418940897336	3.92898813554769	3.8468034960119	3.69233531139846	0.0656379410956093	0.886762422628472	0.957507015780826
Merged-chr3-8924908-4	chr3	8924809	8925009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1052.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	5.48642201475208	5.4969699288589	6.15695117481138	6.35376021979506	6.09252215817084	5.50331262562093	5.83583596381126	6.1525203916628	-0.0333674278443229	0.919633004014155	0.970343257381288
Merged-chr12-78868304-4	chr12	78868192	78868392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026114, intron 2 of 7)	RLTR35B_MM|LTR|ERVL	6220.0	NM_026114	13665.0	Mm.196220	NM_026114	ENSMUSG00000021116	Eif2s1	0910001O23Rik|2410026C18Rik|35kDa|Eif2a|eIF2alpha	eukaryotic translation initiation factor 2, subunit 1 alpha	protein-coding	6.68832064871273	6.4775017836502	6.31242015427669	6.55866285433658	6.39142801374162	6.39051330400874	6.50584714604287	6.41761906702737	-0.136942347428689	0.524698888393096	0.783073646450333
Merged-chr6-122856152-4	chr6	122856051	122856251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009779)	promoter-TSS (NM_009779)	6.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	7.62686128828918	7.87580343814746	7.49141542605893	7.83878021188083	7.56899793099707	7.69744750044127	7.83972834334042	7.53348728364319	-0.082098568780538	0.656224752613509	0.856566968788984
Merged-chr7-27651158-4	chr7	27651077	27651277	+	904.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2747.0	NM_028417	73032.0	Mm.44095	NM_028417	ENSMUSG00000007944	Ttc9b	2900074C18Rik	tetratricopeptide repeat domain 9B	protein-coding	4.61846180790738	4.52269592361785	4.30892508209839	4.48237190474357	5.11747056228627	4.82989289977647	4.47481752744417	4.44824193330586	0.588970553090407	0.125477484857205	0.39326149859764
Merged-chr2-116897017-4	chr2	116896913	116897113	+	929.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3139.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	4.13851864942658	4.09950216784519	4.1391361214692	4.13141790791258	4.03097838937848	4.6873781645165	4.63380617659137	4.03475448098519	0.607898538914351	0.158689180245584	0.44572447602022
Merged-chr19-46648123-4	chr19	46648035	46648235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177813, intron 2 of 3)	intron (NM_001177813, intron 2 of 3)	24734.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	5.76820752105986	5.62026219627067	5.9208697246292	5.86297480993294	5.29447736689743	5.57387651312312	5.20672224657772	5.51087773786335	-0.68776892545217	0.0123207064390957	0.091561449533138
Merged-chr19-5989241-4	chr19	5989147	5989347	+	988.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007600, exon 22 of 22)	3' UTR (NM_007600, exon 22 of 22)	-3104.0	NM_198650	381203.0	Mm.329638	NM_198650	ENSMUSG00000037451	Slc22a20	Gm963|OAT1-L|mOAT6	solute carrier family 22 (organic anion transporter), member 20	protein-coding	5.62816783326176	5.22642886177523	5.50968768551035	5.62534381790404	5.1962480937048	5.1679863068639	4.62629241257628	4.86780423531939	-0.953083088436241	0.00378430901572864	0.0383544541407588
Merged-chr7-31085306-3	chr7	31085205	31085405	+	867.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8608.0	NM_008557	17178.0	Mm.263847	NM_008557	ENSMUSG00000057092	Fxyd3	Mat8	FXYD domain-containing ion transport regulator 3	protein-coding	4.23288079757175	4.1962600463956	4.1183476919241	3.9716374897562	3.59502280796399	3.34428613899362	3.43373212420418	3.4435559930294	-2.08633620550424	6.4353095859103e-05	0.0013995077941201
Merged-chr11-70466405-4	chr11	70466311	70466511	+	985.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001348337)	TTS (NM_001348337)	-6427.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	5.35778241875727	5.46036316715991	4.99084571177439	4.85742398452782	5.5714046584818	5.53252057168415	5.49400029229013	5.23315893899424	0.523120098678067	0.0984914903015036	0.343994301133918
Merged-chr14-55784050-4	chr14	55783939	55784139	+	930.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361604)	promoter-TSS (NM_001361604)	33.0	NM_080435	104110.0	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	4.95287901168058	4.8153747778166	4.49435363384822	4.75541604887333	4.76457568825512	4.62630301511266	4.68417957345793	4.95032527848499	-0.00275407213695629	0.993635611493198	0.997702270136287
Merged-chr2-143917806-4	chr2	143917694	143917894	+	870.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019771, intron 1 of 3)	intron (NM_019771, intron 1 of 3)	2463.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	4.10336097451936	4.03996457985201	3.71062609773314	3.89998895775315	3.96431402861246	4.13963785120831	3.69665157624662	3.65008608088882	-0.183759763635445	0.69231276829272	0.874855389914335
Merged-chr6-72148751-2	chr6	72148651	72148851	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 5 of 6)	intron (NM_001035228, intron 5 of 6)	-25554.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	2.54967927994228	2.60423051105438	2.69041435580764	2.38715470378586	2.63667364451833	2.79975882239987	2.80641034527142	3.13530984986011	1.4758524611002	0.0276304561517378	0.158586389638524
Merged-chr11-29809529-4	chr11	29809440	29809640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 16 of 41)	intron (NM_146016, intron 16 of 41)	16128.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	5.26277225854509	5.66227371434479	6.00614551332597	6.20810579027247	5.86175812206564	5.33557521439351	5.97527939298593	5.68415200168751	-0.174143275888786	0.594409969015304	0.823411261518897
Merged-chr1-72105650-4	chr1	72105530	72105730	+	888.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100435.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	3.69597402301239	3.60666203372002	3.64289085558571	3.87253614127319	3.72552178970046	3.58207281336783	3.82838841345058	3.79514830793032	0.0486845757950615	0.91711326492994	0.96945475057099
Merged-chr4-124700593-4	chr4	124700497	124700697	+	957.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010213)	promoter-TSS (NM_010213)	-102.0	NM_010213	14201.0	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	5.37369091198273	4.85100787390171	5.4506481985304	5.01262867459067	5.25110321388832	5.11797541102063	4.72170700376497	4.6969897651169	-0.393821666464655	0.274276449952176	0.586021595459744
Merged-chr16-20537563-5	chr16	20537546	20537746	+	962.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009679, exon 2 of 11)	5' UTR (NM_009679, exon 2 of 11)	2166.0	NM_009679	11773.0	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	4.57854161930962	4.9747229280213	4.53671833641869	4.49079686985252	4.6098785625494	4.97909663371394	4.59906352058406	4.6174684264432	0.108042105951931	0.768551734666244	0.909395764436187
Merged-chr11-3202477-4	chr11	3202365	3202565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166547)	promoter-TSS (NM_001166547)	112.0	NM_001166548	74203.0	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	6.66183666948625	6.91230335482573	7.57093515552555	6.7606345694015	6.89841288066195	7.3633785948202	6.86435355343926	6.67438884862285	-0.0692998924336021	0.798742647571751	0.922231100952337
Merged-chr15-103316624-4	chr15	103316518	103316718	+	852.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356627, intron 4 of 7)	intron (NM_001356627, intron 4 of 7)	-6180.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	4.27935907829891	3.78910841120695	4.32313683544557	4.91606913767332	4.23222895792911	3.93361564597014	4.30333639605024	4.13880210166495	-0.591506114394451	0.227361006794799	0.536049324367241
Merged-chr15-66813613-4	chr15	66813507	66813707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	18222.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	5.55805450647524	5.6098012234685	5.66230934211504	5.58871680499382	5.55454883705399	5.67876932698956	5.29715814300516	5.60776707231481	-0.107019909562305	0.689158573204776	0.873181994413164
Merged-chr1-191326401-4	chr1	191326299	191326499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025864, intron 1 of 7)	CpG	434.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	5.75611146343407	6.24809878571269	6.0642081763352	5.46419307296453	6.34724406006442	6.30078904048149	6.11388714485253	6.14104943236481	0.512101091759445	0.0654678510149233	0.272402550939455
Merged-chr6-48708260-4	chr6	48708178	48708378	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153175)	promoter-TSS (NM_153175)	-34.0	NM_153175	231931.0	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	5.2780854587551	5.12388786668218	5.31039459387796	5.36539273876845	5.78598607270694	5.32288087339938	5.37328037121677	5.65643418704064	0.495686711299473	0.0890103717049137	0.32553884312543
Merged-chr14-26502883-4	chr14	26502831	26503031	+	795.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 1 of 22)	L1_Mur2|LINE|L1	31693.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	3.32100419933537	3.31487928076627	3.38025708049948	3.2471850645132	3.63432100493255	3.55093579962092	3.62382087242733	3.37850998783036	0.841598663429667	0.0905722727899256	0.328704618172112
Merged-chr2-11553939-4	chr2	11553826	11554026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177758)	promoter-TSS (NM_001177758)	3.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	7.72430963318236	7.72887329862411	7.93325484482382	7.77679050900983	7.48247188701579	7.81095549896986	7.74305593116542	7.72838995798608	-0.133486645919325	0.441711687155438	0.728618019977218
Merged-chr11-76479888-4	chr11	76479788	76479988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 2 of 21)	MER117|DNA|hAT-Charlie	-11423.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	7.28852902437983	7.36871445838138	7.30018860427862	7.21716106849384	7.16168746909291	7.43484713581903	7.06259857234386	7.2204300313954	-0.0926931137403574	0.616829163604234	0.835175859416732
Merged-chr15-83009190-4	chr15	83009092	83009292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028728, intron 4 of 5)	intron (NM_028728, intron 4 of 5)	13946.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	5.44348872550368	6.00252772674469	5.79955670613266	5.39453160881858	5.95226193799328	5.85043147981569	5.94646828802519	5.8421848026334	0.371705959698212	0.181033846615007	0.477464360760694
Merged-chr15-66286857-3	chr15	66286679	66286879	+	616.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152923)	promoter-TSS (NM_152923)	-555.0	NM_152923	110862.0	Mm.255585	NM_152923	ENSMUSG00000056258	Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding	3.01922797902388	3.16084920722666	3.34280047521554	3.13742505294636	2.923656317843	3.12941988513184	2.74189994794764	2.82049240056557	-1.10199957974942	0.0771022629754252	0.300222208770667
Merged-chr9-121919150-4	chr9	121919048	121919248	+	979.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2843.0	NM_010012	13124.0	Mm.20889	NM_010012	ENSMUSG00000050445	Cyp8b1	-	cytochrome P450, family 8, subfamily b, polypeptide 1	protein-coding	4.48367526018283	4.46487801556424	4.39992402306302	4.31287682441718	4.19309218857135	4.12025457866958	4.78316693115031	4.73899774415256	0.180088414523752	0.658511995640565	0.857904281262009
Merged-chr6-83681774-4	chr6	83681683	83681883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-3926.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	5.51591991107908	5.31244899359584	5.54471992414539	5.55122939484363	5.54032844131491	5.89726260376423	5.6217436954164	5.81207733714681	0.386606005262912	0.153089637577972	0.437555330104179
Merged-chr5-120130365-3	chr5	120130272	120130472	+	759.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028762, intron 11 of 23)	ORR1D1|LTR|ERVL-MaLR	8891.0	NR_045793	100503427.0	Mm.446834	NR_045793	ENSMUSG00000097368	Gm10390	-	predicted gene 10390	ncRNA	3.67902536085384	3.44190014066014	3.13706765807703	3.16332490030717	3.43268590304776	3.3150712036709	3.25362462924771	3.43485508841026	-0.0111973051229177	0.983807067910086	0.994170724005452
Merged-chr1-51520480-4	chr1	51520368	51520568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	-42069.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	5.43912173690004	5.45333233535052	5.49630945490655	5.60757736456473	5.45860081627442	5.39836148592354	5.59839833823605	5.46468122180586	-0.0495304609689024	0.854378535401318	0.945141310652665
Merged-chr4-126252738-3	chr4	126252623	126252823	+	774.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	3596.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	2.83889811827543	3.02072148674696	2.83919843499206	2.7508064750582	3.12746434093138	3.07754155157757	2.95758466388003	3.13861319385646	0.932212275959698	0.110838390787928	0.36778545605771
Merged-chr18-12936972-4	chr18	12936890	12937090	+	894.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 1 of 27)	RMER6B|LTR|ERVK	4851.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	4.387484723963	4.27346896400869	4.30411892638957	4.78808163389484	4.36142573713973	4.02254859565679	4.19584851395039	3.89759143537884	-0.802118423413566	0.0656498051088194	0.272782648208898
Merged-chr15-66807375-4	chr15	66807276	66807476	+	707.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 1 of 7)	Tigger16a|DNA|TcMar-Tigger	24453.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	3.807634387687	3.70833258289886	3.80817457041597	3.84112510350472	4.01568403351261	3.82105489582438	3.74180121943328	3.70123454058337	0.11505982527507	0.798474899448776	0.922050695005043
Merged-chr8-70702814-9	chr8	70702833	70703033	+	798.806396	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5194.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	3.68400892624673	3.78771229732436	3.7345595584217	3.37975171620409	3.66721244872069	3.57803444789286	3.50847244827242	3.68239960628799	-0.0978072792698532	0.842818452507854	0.940323698985438
Merged-chr11-46265578-4	chr11	46265468	46265668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 13 of 30)	Lx8|LINE|L1	30011.0	NM_177075	320116.0	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	7.24736092695188	7.48776670615233	7.2038803918159	7.50990262075943	7.4931051261936	7.28698705821507	7.61973312637703	6.89098000162292	-0.0277012560775327	0.899032086580339	0.962375626232471
Merged-chr11-106741468-4	chr11	106741358	106741558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51B_Mm|LTR|ERVK?	-9768.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	7.51951085092458	6.98916275046687	6.5608291482459	7.15296761303962	7.38152518532962	7.15375718419522	7.11175865529446	7.23097744390435	0.169928871358781	0.474813545186762	0.75189110620589
Merged-chr7-80440957-3	chr7	80440821	80441021	+	844.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-35485.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	3.71519645191388	3.64726678205623	3.61769014827698	3.51086397416299	3.338533718115	3.44729494582965	3.60267226608279	3.39397504770928	-0.578826758765016	0.246302100181623	0.557591815507556
Merged-chr12-39510163-4	chr12	39510063	39510263	+	851.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	527213.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	4.07077581540344	4.63470591975243	4.01804482281393	4.44490381767617	4.16496842893085	4.34617233513252	4.45151989553839	4.16943453783786	-0.105642840936232	0.80295088526146	0.923965812075785
Merged-chr16-45283329-3	chr16	45283216	45283416	+	939.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER67D|LTR|ERV1	58979.0	NM_177584	208154.0	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	3.54965188438193	3.77556793989131	3.71130944531088	3.68818964243809	3.74292886530584	3.72243339121874	3.53699141592524	3.60416316627772	-0.0854843357552178	0.855351599960046	0.945609560201229
Merged-chr14-99044356-2	chr14	99044256	99044456	+	783.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175245, intron 1 of 2)	intron (NM_175245, intron 1 of 2)	1780.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	3.04913208173537	3.1615253906607	2.91317194938473	3.13226532532968	2.89385242620134	3.28611243105527	3.32496601680304	3.4837140528647	0.716932903243791	0.227300202330902	0.535996291786981
Merged-chr10-21611221-4	chr10	21611125	21611325	+	911.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	18080.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	4.54164430013695	4.92383272226503	4.98904033499224	5.14481383528276	4.67303870834446	4.80363375664583	4.43087598159932	4.58321614624019	-0.632394472341968	0.0811828189100529	0.309190333623542
Merged-chr11-108343240-3	chr11	108343064	108343264	+	830.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 1 of 16)	CpG	724.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	3.23939198492443	3.06891336035897	3.48359327385248	3.00978250209226	3.10167511889846	2.74226381004702	3.05622374601242	3.06565100165053	-0.827799858618301	0.188077556369131	0.486593936638499
Merged-chr15-76780976-4	chr15	76780871	76781071	+	891.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	37199.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	5.057520433633	4.85064979212003	5.1777170060617	5.73551704999879	4.0298349578851	4.4551802869926	4.45512714888494	4.8148491981653	-1.66086725856978	7.40045016245643e-05	0.00157287740254848
Merged-chr12-52308800-4	chr12	52308686	52308886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 10 of 10)	intron (NM_029760, intron 10 of 10)	171823.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	6.15226121329233	5.76157602472535	6.28602900936809	6.76472873696941	5.84757645735717	5.79613638728527	6.54011000053125	5.883271228712	-0.382262500692486	0.233895812542814	0.543577222708428
Merged-chr11-31868948-4	chr11	31868874	31869074	+	874.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1966.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	3.96484608740277	4.0317110826738	3.96541151812831	3.63502509576498	4.27616447923712	4.3364412830162	4.23237954658202	4.55202275327899	1.1959027076357	0.00419724907519751	0.0416268624666969
Merged-chr3-88425216-4	chr3	88425102	88425302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178696)	promoter-TSS (NM_178696)	-61.0	NM_001357749	229517.0	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding	8.02783320599436	8.24826545687305	7.92529092170635	7.98207830772563	8.00796457216109	8.13828763587105	8.11683817543761	7.8305786935406	-0.0303733300609268	0.858974696714169	0.946576014812915
Merged-chr18-3009206-1	chr18	3009106	3009306	+	809.799988	f1_balb.idr	Intergenic	RLTR30|LTR|ERV1	114206.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	2.72377872896173	2.68432222128566	3.14871007838749	2.8664795973051	2.3068679600644	2.62668340213071	2.58361841775538	2.36483094052138	-2.24441850087529	0.0051061331266839	0.048247637040254
Merged-chr15-101113383-4	chr15	101113297	101113497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2358.0	NM_144790	208258.0	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	6.29869574937569	6.57971737582175	6.5135806634319	6.62009722864622	6.34744609533733	6.70545398418204	6.24818060298307	6.58823206389198	-0.0580446879032876	0.799029880802692	0.922381586635156
Merged-chr1-180569337-2	chr1	180569237	180569437	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007415, intron 1 of 22)	CpG	446.0	NM_007415	11545.0	Mm.277779	NM_007415	ENSMUSG00000026496	Parp1	5830444G22Rik|AI893648|ARTD1|Adprp|Adprt1|C80510|PARP|PPOL|msPARP|parp-1|sPARP-1	poly (ADP-ribose) polymerase family, member 1	protein-coding	3.75827498128057	3.81099321644661	3.54658445971486	3.81039554086203	3.38738433863216	3.60327005291665	3.5333724039511	3.85062272044261	-0.444763638128712	0.366343138344466	0.670823521147519
Merged-chr18-32377177-4	chr18	32377077	32377277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083334)	promoter-TSS (NM_001083334)	-40.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	7.47491739042985	7.60095415370943	7.19059769912749	7.48810797080417	7.54902247790407	7.91659640060565	7.70946050717644	7.16160128732463	0.212393937189135	0.322504045637557	0.633993567259619
Merged-chr11-51688722-4	chr11	51688615	51688815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025319)	promoter-TSS (NM_025319)	-81.0	NM_025319	66050.0	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	7.84755529876582	8.12570502304406	7.78553320354228	7.77287781905133	8.2872680141552	8.16518886982528	8.23169757673122	8.26520159921703	0.450605608933234	0.00685627878937447	0.0599757979536543
Merged-chr7-83597058-4	chr7	83596953	83597153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177695, intron 4 of 22)	intron (NM_177695, intron 4 of 22)	12122.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	5.4399651768509	5.77505669241858	5.64127656777378	5.16655111289881	6.12017980254255	5.89383618018055	6.15876723845365	5.40579553213809	0.690822261054445	0.0253383005126369	0.149908976160667
Merged-chr10-95236560-4	chr10	95236485	95236685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	87124.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	7.29222179257095	7.08023525967011	7.73061737561879	7.79239160893314	6.86919776118578	6.88299505575466	7.23597594915363	7.27787840917936	-0.589750784215795	0.0125758013557268	0.0928561166700498
Merged-chr19-38836550-4	chr19	38836467	38836667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362424)	promoter-TSS (NM_001362424)	-12.0	NM_145952	209478.0	Mm.391153	NM_145952	ENSMUSG00000048720	Tbc1d12	BC033574	TBC1D12: TBC1 domain family, member 12	protein-coding	7.44775312855238	7.30041905400047	7.59951363876479	7.66079139060951	7.25908096728976	7.11086001335581	7.44909369774988	7.1362521610745	-0.358802299933168	0.0620612886412687	0.263477303125186
Merged-chr11-94730420-2	chr11	94730320	94730520	+	754.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25921.0	NM_001007584	432589.0	Mm.342314	NM_001007584	ENSMUSG00000056008	Gm11541	-	predicted gene 11541	protein-coding	2.82865138164627	2.8738398479428	3.20656956640968	2.65025924548065	3.29912612052673	3.14326164373905	3.13797172188001	3.25815252690616	1.31978596319942	0.0302431907058071	0.168142164268206
Merged-chr10-88799484-4	chr10	88799392	88799592	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175158, intron 19 of 61)	MTD|LTR|ERVL-MaLR	27322.0	NM_175158	70683.0	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	4.81431407787541	4.56849420261103	4.62723877752038	4.98102378407622	4.39532879096886	4.58581100213232	5.01310594919925	4.49689036291834	-0.275445546171419	0.467913004747095	0.747218263768025
Merged-chr15-64089407-4	chr15	64089277	64089477	+	918.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001276462, exon 28 of 28)	3' UTR (NM_001276462, exon 28 of 28)	-28929.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.91970848860739	4.30530357723122	4.3912802873092	4.48373757727885	4.15154567049656	4.25475989676382	4.33123079828631	3.91813248848879	-0.325208897014519	0.446272177796036	0.732035290100801
Merged-chr19-30030437-4	chr19	30030329	30030529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144873)	promoter-TSS (NM_144873)	-84.0	NM_144873	109113.0	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	8.20269747546638	8.48003487914109	8.43208168614936	8.27488739735499	8.41642254811635	8.62451971079212	8.39799291811147	8.25805501228757	0.100011088723201	0.542999931828053	0.794143955034806
Merged-chr2-173000089-4	chr2	172999994	173000194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175112)	promoter-TSS (NM_175112)	-23.0	NM_175112	66679.0	Mm.4113	NM_175112	ENSMUSG00000027509	Rae1	3230401I12Rik|D2Ertd342e|MNRP|MNRP41	ribonucleic acid export 1	protein-coding	8.05071310429578	8.40661429647409	7.89189746019579	8.27654374890089	8.3884880275889	8.62987551179364	8.4612349470683	8.41128902801673	0.375026440572457	0.0345481091251819	0.183926691056195
Merged-chr9-99560542-2	chr9	99560442	99560642	+	952.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 1 of 21)	B1F2|SINE|Alu	8357.0	NM_001166138	74125.0	Mm.234823	NM_028768	ENSMUSG00000032468	Armc8	1200015K23Rik|Gid5|HSPC056	armadillo repeat containing 8	protein-coding	3.43477696582561	3.25571147553271	3.21047565056847	2.98310270148753	3.58323655771025	3.12287791638187	3.19902876044024	3.48368309394902	0.528254188514239	0.353016474974308	0.659906317421994
Merged-chr14-14104324-3	chr14	14104242	14104442	+	813.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_139227, exon 12 of 12)	3' UTR (NM_139227, exon 12 of 12)	16562.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	2.97537107640561	2.89245143100122	2.97568039675964	2.89897629872426	3.36282995109105	3.6875911750833	3.68294990183788	3.51548148987971	2.36721339887807	2.52077743461758e-05	0.000623658036213572
Merged-chr9-43239803-5	chr9	43239710	43239910	+	887.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178644)	promoter-TSS (NM_178644)	6.0	NM_178644	102644.0	Mm.246479	NM_178644	ENSMUSG00000032014	Oaf	AL024221|D130038B21Rik|D9Ucla1	out at first homolog	protein-coding	3.93198911559645	3.60699340510069	3.6171056098236	3.61764553220287	3.30166750960478	3.23762690293249	3.44037577190927	3.50832007972957	-1.08801972051977	0.0366082052008806	0.190439275036604
Merged-chr2-181237124-4	chr2	181237023	181237223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183162, intron 6 of 18)	AT_rich|Low_complexity|Low_complexity	4904.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	5.40887410371193	5.72087322558107	6.08580653450169	5.9050032755102	5.71916679764279	6.13772416252488	5.82218228990704	6.00144636577393	0.181901849674919	0.513590473004149	0.776599245384027
Merged-chr1-131672570-4	chr1	131672483	131672683	+	985.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007799, intron 9 of 9)	intron (NM_007799, intron 9 of 9)	-16112.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	5.42432513003845	5.48839039933565	5.01128943352422	5.45597053725155	5.78530961964811	5.73884043199887	5.66174151452401	5.6127958451444	0.57033850448549	0.0413560050333946	0.205923685363553
Merged-chr10-7956302-4	chr10	7956208	7956408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138667)	promoter-TSS (NM_138667)	-185.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	7.43471254838558	7.68585159877797	7.36642161510488	7.37684717279302	7.48234580725916	7.54349913323681	7.54463631229922	7.29865944955383	6.45369850475341e-05	0.999718764543197	0.999831138264464
Merged-chr16-30532219-4	chr16	30532109	30532309	+	905.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357415, intron 9 of 11)	intron (NM_001357415, intron 9 of 11)	18369.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	4.05981673923666	4.33444233072207	4.06038510650814	4.61077282475617	4.27084951155855	4.42483972822108	4.2785052619147	4.10906164930352	-0.0847804185835471	0.841912646679852	0.940020733877539
Merged-chr1-122357234-3	chr1	122357144	122357344	+	815.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	152099.0	NR_151524	102638832.0	Mm.112794	NR_151524	ENSMUSG00000099960	Gm28590	-	predicted gene 28590	ncRNA	4.52132423109877	4.58997792171678	4.60916548560438	4.28681712466003	4.8894376014386	4.70062570377353	4.97997445225606	5.25188472358656	1.00338231637758	0.00434277433515008	0.0427603173885251
Merged-chr5-99336606-4	chr5	99336482	99336682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-83655.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	8.34629094845919	8.52008265209707	8.24602003819364	8.43760207137984	8.30851622625459	8.35707540401932	8.42238831754316	8.24061790470541	-0.0787049172353165	0.611355197313129	0.832274675669425
Merged-chr18-67258514-4	chr18	67258415	67258615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-12685.0	NM_001357518	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	5.4136152738858	5.46555648356992	5.05715460194519	5.00748902366116	5.43736821285623	5.37564811586456	5.52070492307543	5.68893955827306	0.481109001226309	0.108338797662853	0.363296525655024
Merged-chr9-94696856-4	chr9	94696761	94696961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	26969.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	7.99066820884879	7.98950501129453	8.26623867633587	8.42502377308731	8.13207336277833	8.04515691606814	8.15848113034635	8.11248181323255	-0.0979569397000236	0.577907573162714	0.814391164493464
Merged-chr12-74013941-3	chr12	74013850	74014050	+	772.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172804, intron 1 of 6)	intron (NM_172804, intron 1 of 6)	16189.0	NM_172804	238266.0	Mm.311393	NM_172804	ENSMUSG00000044912	Syt16	6430703N11|Strep14|Syt14l|syt14r	synaptotagmin XVI	protein-coding	3.32675318465262	3.57981654734358	3.51289915396449	3.58652078282137	3.60502531417377	3.74120503516604	3.8471445808705	3.72345833536055	0.669511935149831	0.164251585657029	0.454381311669139
Merged-chr3-31216112-4	chr3	31215970	31216170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172861, intron 7 of 7)	L1MA4|LINE|L1	66150.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	5.68027255006312	5.3198366112234	5.44439498668338	6.08954962939458	5.25792394075893	5.05758397792284	5.47329784751243	5.6772230188828	-0.51674363259096	0.119785164918719	0.383121356663358
Merged-chr9-119444901-4	chr9	119444744	119444944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172456)	promoter-TSS (NM_172456)	-116.0	NR_153320	208194.0	Mm.101578	NM_172456	ENSMUSG00000042787	Exog	AW557704|ENGL-B|ENGL-a|Endogl1|Endogl2|Engl|Engla|Englb	endo/exonuclease (5'-3'), endonuclease G-like	protein-coding	6.20769495449446	6.60243101496922	6.03908476894453	6.14481076102263	6.17852861877464	6.53367756127799	6.56450404527695	5.98860535481118	0.10190702781205	0.698318533296154	0.878303994693932
Merged-chr9-21237257-4	chr9	21237150	21237350	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016679, exon 1 of 5)	exon (NM_016679, exon 1 of 5)	2082.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	5.37305934458718	5.07306512886001	5.13582018542448	5.22515604140346	5.04180553477824	5.40299744995074	5.14280967600421	4.95723672017869	-0.12328596892396	0.688357598568621	0.872728425878073
Merged-chr7-27474704-4	chr7	27474610	27474810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133210, intron 1 of 1)	intron (NM_133210, intron 1 of 1)	870.0	NM_133210	170742.0	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	8.41890864586936	8.44093321720059	8.29106043545014	8.39397954744661	8.29279121558462	8.27912373541312	8.493183464664	8.22768891963733	-0.0779039278821271	0.612562505963825	0.832832725096038
Merged-chr11-74524373-4	chr11	74524268	74524468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	65790.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	5.10166540797468	5.19762208631532	4.84315496103094	5.33932701175428	5.42572180953473	5.13710941144007	5.20429637708164	5.09906146442304	0.150945342515193	0.63345344516648	0.844654126311447
Merged-chr5-130222956-2	chr5	130222867	130223067	+	814.0	f0_balb.idr|f0_c57.idr	intron (NM_027854, intron 1 of 6)	B3A|SINE|B2	632.0	NM_027854	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	4.1780728204761	4.14253598690974	4.27866839336293	3.47490923004007	4.77044356837003	4.63449104387231	4.76561881939784	4.88006447929666	1.72106050838356	6.88623836912699e-05	0.00148083251019967
Merged-chr2-157129987-4	chr2	157129861	157130061	+	882.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139520, intron 1 of 16)	intron (NM_001139520, intron 1 of 16)	5261.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	3.86391034234708	3.87565196743696	3.81484527647668	3.65328417716438	3.97950770056411	3.82790592563085	3.69509555921639	3.81264730759738	0.128544297025056	0.775368086228286	0.912320643528997
Merged-chr6-86556865-4	chr6	86556749	86556949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037961, intron 3 of 4)	B1F1|SINE|Alu	29448.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	6.24427763643973	6.39689084608291	6.46707849513422	6.66285330342676	6.63561998890391	6.3807014314517	6.45089059711104	6.74919481952383	0.146101046934015	0.522225958868969	0.781906056970297
Merged-chr11-115161168-3	chr11	115161097	115161297	+	936.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163753, exon 9 of 9)	3' UTR (NM_001163753, exon 9 of 9)	-2144.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	3.41827813901822	3.46818989551409	3.99501354359701	3.06587514873699	3.86953727595521	3.93732537136322	3.53003846498482	4.03384757544136	0.986400395772247	0.077622672797973	0.30130973321959
Merged-chr16-64884670-3	chr16	64884558	64884758	+	846.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	32657.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	3.67130389489356	3.6188285994237	3.72170704653709	3.75206751702273	3.31858986307391	3.68231703520931	3.5520165789981	3.56389464830576	-0.542876501233082	0.267003100630365	0.578627300952009
Merged-chr8-13106122-1	chr8	13106022	13106222	+	1000.0	f0_balb.idr	promoter-TSS (NM_178708)	promoter-TSS (NM_178708)	401.0	NM_146207	99375.0	Mm.212861	NM_146207	ENSMUSG00000031446	Cul4a	2810470J21Rik|AW495282	cullin 4A	protein-coding	5.34689600200159	5.09903785827815	5.95963185550072	4.891442576549	5.17283615215768	5.11956884791042	5.26154728704279	5.45576791771503	-0.216015454734894	0.553118597193488	0.799974396526481
Merged-chr2-168570155-3	chr2	168570065	168570265	+	879.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291173, intron 1 of 8)	intron (NM_001291173, intron 1 of 8)	20200.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	3.55708190845841	3.86159047105776	4.18988477023406	4.01782364318184	3.39388846093288	3.26710941019134	3.60047768706068	3.55566535626079	-1.49115282595664	0.00475801819495943	0.0458220778107181
Merged-chr3-36475827-4	chr3	36475734	36475934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105976)	promoter-TSS (NR_105976)	53.0	NM_009673	11747.0	Mm.1620	NM_009673	ENSMUSG00000027712	Anxa5	Anx5|R74653	annexin A5	protein-coding	9.30458533041833	9.62752088115101	9.52788538965925	9.42082845627906	9.28452130391334	9.34422912964599	9.61927940717441	9.30036639367125	-0.100818870079149	0.51742666738037	0.778875624021219
Merged-chr12-24710824-3	chr12	24710660	24710860	+	855.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_009104, intron 5 of 9)	B3|SINE|B2	2506.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	3.85698933272796	3.66136340974367	3.95235605414183	3.6095255979169	3.60573928223732	3.82043891862353	3.97907542459064	3.94989208780547	0.219623536841938	0.637101943404634	0.846602804622392
Merged-chr7-18991138-4	chr7	18991037	18991237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145579)	promoter-TSS (NM_145579)	-108.0	NM_145579	232934.0	Mm.440069	NM_145579	ENSMUSG00000048481	Mypop	Myodysa|P42pop	Myb-related transcription factor, partner of profilin	protein-coding	7.19309461766652	7.34197006753149	7.1599318710378	6.83358513462702	7.10579834919934	7.80601230215397	7.30688502943259	7.3779039586916	0.380677746783768	0.0940553385969639	0.335476295148992
Merged-chr1-33907614-4	chr1	33907508	33907708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276764)	promoter-TSS (NM_001276764)	13.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	5.71196015788758	6.24641599978602	5.76434399499317	5.84882998125948	5.88507695704808	6.08167637427715	5.87694354207463	5.57077227298578	-0.0765980849594094	0.77947809183396	0.913983775346755
Merged-chr18-54983285-4	chr18	54983189	54983389	+	867.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	6891.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	5.0229439987339	4.70598530409164	4.57824839586245	4.82149487525427	5.07093945351219	4.66601062620649	4.72245854176308	5.02034049610222	0.19990943307245	0.563641018754702	0.806428731514002
Merged-chr7-28809618-4	chr7	28809539	28809739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-1251.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	5.45644946339755	6.04616858987362	5.45738778974257	5.57804328853147	6.20594596205002	5.75992913126074	6.3008404905448	6.32895594792549	0.810177511063813	0.00432735540830866	0.0426284053282384
Merged-chr13-113870556-4	chr13	113870452	113870652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	76044.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	7.02742508345527	7.16441334929338	7.23648569053555	7.77154441052505	7.71671887597771	7.25890266967177	7.79623173544116	7.40963985749201	0.291264981652211	0.22196001309461	0.530047563717821
Merged-chr6-72355284-6	chr6	72355227	72355427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144916)	promoter-TSS (NM_144916)	-156.0	NM_144916	232086.0	Mm.491165	NM_144916	ENSMUSG00000055912	Tmem150a	BC014685|Tmem150	transmembrane protein 150A	protein-coding	5.30937296828551	5.27354943475524	5.58155355251381	5.39313875618009	5.29949251337384	5.18283726227797	5.22251055208436	5.42209100537674	-0.190803554783645	0.505365475087201	0.771470037762552
Merged-chr16-91726435-4	chr16	91726402	91726602	+	988.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026994, intron 1 of 11)	intron (NM_026994, intron 1 of 11)	2300.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	4.55065079091011	4.40298757079264	5.01210370124725	4.64885291676103	4.64201133095578	4.63897593597867	4.79827556718954	4.88549187901829	0.157947920276802	0.662641250367094	0.860115279097678
Merged-chr3-52066461-1	chr3	52066361	52066561	+	681.0	f0_balb.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	38545.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	3.4771570017324	3.2988702823201	3.84824217924614	3.54308979995528	3.18460625680706	3.53858834035527	3.23140513807658	3.17504938934873	-0.94192893512777	0.0899005532243812	0.327399922126285
Merged-chr13-105055640-4	chr13	105055542	105055742	+	986.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029879)	promoter-TSS (NM_029879)	-712.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	6.3337864753841	6.13671172881419	5.90921374567156	6.52176153073808	5.34624857904823	5.33610449910696	6.04982117698079	5.85811222252306	-0.912524589820023	0.00255251603828364	0.0281726684895319
Merged-chr12-3658149-3	chr12	3658087	3658287	+	946.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 8 of 17)	L2|LINE|L2	85203.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	3.05632051846215	2.90154121157612	2.99780553909803	3.390258009656	2.93970461217735	2.90812121368557	2.9873095642004	2.87005986394309	-0.786646739387244	0.206058703077673	0.50996204823781
Merged-chr15-82899776-4	chr15	82899680	82899880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045068, intron 1 of 3)	CpG	700.0	NR_045068	100504637.0	Mm.440928	NR_045068	ENSMUSG00000100199	Gm20324	-	predicted gene, 20324	ncRNA	6.58020742410697	6.87234391272666	6.38545278305568	5.79559655098372	6.66659278916208	6.57924547081782	6.05685726930948	5.9423473470451	-0.156134350075924	0.622245077839443	0.838289012366954
Merged-chr1-128713052-4	chr1	128712952	128713152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120753.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	8.04007553345918	8.24629261406002	8.23862722524895	8.43765023504288	8.13814550768321	8.03218617935348	7.99634935540637	7.8098118699011	-0.323711655184503	0.062224921383559	0.26398305394924
Merged-chr1-149955676-4	chr1	149955573	149955773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	5617.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	5.22007838272893	5.31732406042428	5.81634492560877	6.25282011574513	5.25533236787918	5.21897359881719	5.41480840483764	5.46701213647445	-0.683710805937406	0.050192999162921	0.232343553337584
Merged-chr14-66175835-4	chr14	66175630	66175830	+	784.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172498, exon 11 of 30)	exon (NM_172498, exon 11 of 30)	34770.0	NM_144803	110902.0	Mm.57350	NM_144803	ENSMUSG00000022041	Chrna2	Acra-2|Acra2|BC011490	cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)	protein-coding	3.47838843580845	3.05976278958997	3.10925734060223	3.11689784530502	3.04166638330756	3.02000396129177	3.09820960650737	3.27919558325728	-0.330029384456508	0.567157531494901	0.80813760528237
Merged-chr17-49016373-4	chr17	49016280	49016480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027452, intron 1 of 2)	intron (NM_027452, intron 1 of 2)	83798.0	NM_027452	70530.0	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	5.89553277858073	5.90824749809523	5.48880865853212	5.46619815898655	5.93712822046573	5.75253399395436	5.97017342910651	5.48498643789285	0.179515917432435	0.528773712195694	0.78527789147233
Merged-chr12-103347615-4	chr12	103347519	103347719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 1 of 9)	intron (NM_023049, intron 1 of 9)	8382.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	6.89881683996906	6.614066621152	7.65891187155932	7.41476535807434	6.95286439481579	6.76978962442571	7.03126902338231	7.1320741065706	-0.324515328068982	0.218587134412034	0.525866550860655
Merged-chr2-167662601-3	chr2	167662467	167662667	+	912.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1023.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	3.42910636934803	3.33577523064102	3.15744223841924	3.3805788129937	3.01621563800345	3.20512960102596	3.08513909214777	3.09391612105063	-0.923420386559165	0.0990996434599014	0.345116491238064
Merged-chr2-71274417-4	chr2	71274340	71274540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172436, exon 18 of 18)	3' UTR (NM_172436, exon 18 of 18)	62494.0	NM_010064	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	7.32048599145353	7.53848813599469	7.31135362602073	7.42429219532873	7.49567847368755	7.4883865569901	6.87390463833765	7.24205521975187	-0.135749502984654	0.513964633513859	0.776799740756736
Merged-chr18-62169528-4	chr18	62169440	62169640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10441.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	5.67732395923127	5.90322581596628	6.00692289325344	6.37574999461145	5.61968260795512	5.74466726668393	5.64966999798258	5.84911013567187	-0.521333762159365	0.0624088092443155	0.264451889330672
Merged-chr5-147363228-3	chr5	147363138	147363338	+	925.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010229, intron 9 of 23)	intron (NM_010229, intron 9 of 23)	37251.0	NM_010229	14255.0	Mm.194	NM_010229	ENSMUSG00000042817	Flt3	B230315G04|CD135|Flk-2|Flk2|Flt-3|Ly72|wmfl	FMS-like tyrosine kinase 3	protein-coding	4.0320101813945	4.15426998490835	4.07693816526382	4.02744084789144	3.95541979319378	3.66224635678348	3.71460284930309	3.78240033288087	-0.785049046153911	0.0793533583761904	0.304966940006417
Merged-chr10-21961134-4	chr10	21961019	21961219	+	941.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 2 of 13)	intron (NM_001161845, intron 2 of 13)	-17553.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	6.32260092939208	6.13228273795232	6.06702837729349	6.05629227798217	5.40741044681751	5.18908867538795	5.34900297022961	5.08116840086743	-1.45907115261046	1.21877737586737e-07	5.14539471155773e-06
Merged-chr11-110642621-3	chr11	110642498	110642698	+	691.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163258.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	3.43780255677826	3.15362633165182	3.92138732064063	3.91650793507729	3.21310727034852	3.49391296484558	3.58820319880647	3.37655928751195	-0.747832666985984	0.19784556676777	0.499157372922807
Merged-chr5-123907793-2	chr5	123907658	123907858	+	891.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_026603, intron 1 of 7)	intron (NM_026603, intron 1 of 7)	483.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	3.79455281644485	3.72440760159431	3.69775059302448	3.64692727047566	3.62575299936179	3.46526026419104	3.6315742245758	3.59039998885608	-0.407727113818082	0.388556702672101	0.688981838974675
Merged-chr8-121861488-3	chr8	121861394	121861594	+	917.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31925.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	3.31045468829962	3.47348956956891	3.37538458436287	3.67623053914449	3.8341457187092	3.6682633975978	3.78489821552899	3.60419296515309	0.766916747835154	0.129295862179137	0.400165458021043
Merged-chr6-125042180-4	chr6	125042089	125042289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133345, intron 1 of 7)	intron (NM_133345, intron 1 of 7)	2341.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	6.20810559659173	6.78712137515743	6.12607026367669	6.10298059518104	6.73510351086656	6.34437219996179	6.25573425756224	6.6021513504902	0.251642400309612	0.347372802714238	0.655470248777816
Merged-chr15-101240939-4	chr15	101240859	101241059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15773.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	5.55390907713515	5.73311203408493	5.60969699089524	5.7910801031482	5.54732861445715	5.70258040799509	5.77840666181358	5.78070168663646	0.0188375442392195	0.942374290965228	0.979088236393896
Merged-chr5-114596817-4	chr5	114596670	114596870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004180, intron 2 of 2)	intron (NM_001004180, intron 2 of 2)	28519.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	5.35907270411823	5.13827698106618	5.08335907636738	5.28570842008796	5.10446858941553	5.22360042007973	5.27741154078238	5.11376610353039	-0.0895713201412162	0.761690070703764	0.906627718104067
Merged-chr5-43737176-3	chr5	43737083	43737283	+	912.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359906, intron 35 of 37)	intron (NM_001359906, intron 35 of 37)	44966.0	NM_001159963	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	4.91236643400915	5.1380148863188	5.36872410106102	5.70789682137195	3.50568759600999	3.66828882681877	3.60085202303404	3.76427392358091	-5.15523437387289	3.93438838940674e-14	5.53450259228424e-12
Merged-chr19-4031120-2	chr19	4031020	4031220	+	702.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	6792.0	NM_013541	14870.0	Mm.299292	NM_013541	ENSMUSG00000060803	Gstp1	GstpiB	glutathione S-transferase, pi 1	protein-coding	3.33474403839309	2.95615510518301	3.17586223841717	2.78807666087729	3.3210597087905	2.89175652540122	2.91821144124983	3.28234680721098	0.189150240288767	0.765009420902304	0.907967144174032
Merged-chr8-70775884-5	chr8	70775863	70776063	+	790.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029440)	promoter-TSS (NR_029440)	749.0	NM_008841	18709.0	Mm.12945	NM_008841	ENSMUSG00000031834	Pik3r2	p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding	3.60322318268168	2.95103910711945	3.35290467682443	2.88871440931347	3.0233077762796	3.29096350787746	3.16354972091189	3.64605917988154	0.255286107643187	0.685957178506193	0.871760528240684
Merged-chr6-87743475-4	chr6	87743356	87743556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 2 of 7)	intron (NM_001159697, intron 2 of 7)	12587.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	5.89442770205489	6.29781780017629	5.50259696585244	5.91184160156239	6.13795524439026	5.61992592141	5.77246806931392	5.61575014551726	-0.189911387569888	0.524883353925483	0.783112942735533
Merged-chr13-73467983-3	chr13	73467869	73468069	+	954.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 1 of 13)	intron (NM_145376, intron 1 of 13)	586.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	4.43259278293798	4.09899878307986	4.10603731144296	4.2384311559712	4.03895006322131	3.84966727255945	3.9924413760455	4.10355592679844	-0.583113624039696	0.164612537644848	0.45485234168206
Merged-chr1-59763390-7	chr1	59763261	59763461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007561)	promoter-TSS (NM_007561)	-918.0	NM_007561	12168.0	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	5.48931781214283	4.96742412542687	5.40180889875378	5.00412618685965	5.79493094299253	5.92129548112971	6.09396466741177	5.64668378431497	1.12306046023901	0.000131143739011113	0.00254976241438734
Merged-chr9-32138817-4	chr9	32138712	32138912	+	822.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195632, intron 2 of 21)	L2a|LINE|L2	22676.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	3.82932544748772	3.7393791911233	3.82984266371083	4.55975244192972	4.09002072656605	4.05722635369207	3.86790220124942	3.98236423011224	-0.149273441683913	0.766471885514027	0.908657456388183
Merged-chr15-97581899-4	chr15	97581792	97581992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123930.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	7.64125195704079	7.68193191841259	7.08138755747746	7.22612231071823	7.4363478159746	7.57025463188669	7.38556660220159	6.99825442211859	-0.0872096124848323	0.699107179799656	0.878624019192029
Merged-chr18-5832793-4	chr18	5832719	5832919	+	774.674988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	240172.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	4.00497422922059	4.60103018047177	4.15501241360326	3.88190958148114	4.17863745624378	4.01903907677002	4.26936654865106	4.36821209141123	0.0734676109894559	0.868553314888237	0.950762137632278
Merged-chr11-74532557-3	chr11	74532457	74532657	+	902.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	57601.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	3.45228051648348	3.56531587251914	3.61685441131506	3.60280607731953	3.49332541353682	3.07895518908342	3.43977309931636	4.00775109930542	-0.0390197016923691	0.94564667237374	0.980596379383872
Merged-chr1-135680907-4	chr1	135680801	135681001	+	896.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39162.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	4.1314537926348	4.46648319292287	4.45309870461091	4.23760584871811	4.554886658578	4.40709207294733	4.51046049523236	4.32246002554421	0.309947693706754	0.412906404882126	0.707875069079333
Merged-chr13-111870585-3	chr13	111870467	111870667	+	864.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130345, intron 2 of 2)	intron (NR_130345, intron 2 of 2)	2631.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	3.61021104850266	3.47194917595911	3.66109562958097	3.54685531773453	3.29518815719802	3.37273396927003	3.90793878250799	3.3229893269219	-0.237946164827172	0.654466184423611	0.855635636382923
Merged-chr12-75819315-3	chr12	75819206	75819406	+	912.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005510, intron 1 of 115)	intron (NM_001005510, intron 1 of 115)	988.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	3.27986761012461	2.94093546741668	3.15696917040695	3.41509537735242	3.10684619258988	3.61381821255787	3.52955244940357	3.33604422579053	0.664631162550511	0.256580048128845	0.568165481762166
Merged-chr4-115640777-4	chr4	115640688	115640888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007823, intron 3 of 11)	intron (NM_007823, intron 3 of 11)	6917.0	NM_007823	13120.0	Mm.1840	NM_007823	ENSMUSG00000028713	Cyp4b1	-	cytochrome P450, family 4, subfamily b, polypeptide 1	protein-coding	6.45856195759423	5.73088240045299	6.14720776859662	6.14594195206529	6.55651343437518	6.14707282930814	6.67522146139029	6.38827391770295	0.479769493566567	0.0650078610536823	0.27123062965651
Merged-chr14-70798776-4	chr14	70798679	70798879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	24398.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	6.37606099200643	6.22784430995695	6.41099192005563	6.15504037520727	6.06837366200827	6.34888665953696	6.27442932544342	6.04161523667104	-0.155291681330856	0.503863437114676	0.770592637321386
Merged-chr7-83879535-4	chr7	83879428	83879628	+	975.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030705)	TTS (NM_030705)	4813.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	5.00552008806392	5.1608475874377	5.59833333286506	5.55782807032061	5.53475896267205	5.6677949139956	5.46688669359312	5.40688001230754	0.26769618111895	0.378609229138176	0.681182628403749
Merged-chr2-166711832-4	chr2	166711741	166711941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	1991.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	5.4174427655319	6.85068061734998	5.63082440736863	5.21663987217258	6.15063414618196	6.50114699996819	5.6562846495445	5.08034893023466	-0.024732010152214	0.973367164766643	0.990485651958264
Merged-chr7-73541700-4	chr7	73541594	73541794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081345)	promoter-TSS (NM_001081345)	52.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	5.60487929365846	5.59395500712137	5.33618460204284	5.30035371343977	6.06995309024335	5.51617240353876	6.16625080769654	5.84668296724321	0.786067182358478	0.00538040353647852	0.0501403172719304
Merged-chr7-99976537-4	chr7	99976444	99976644	+	972.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	3914.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	5.44886807683992	5.3541107238219	5.34129777095413	5.53651698028008	5.02718166048508	5.00456708480895	4.99641955989671	5.01707925413544	-0.780243219568593	0.00795210817405484	0.0669139522669436
Merged-chr1-174042717-4	chr1	174042607	174042807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146717, exon 1 of 1)	exon (NM_146717, exon 1 of 1)	774.0	NM_146717	258712.0	Mm.223146	NM_146717	ENSMUSG00000045381	Olfr433	MOR123-1	olfactory receptor 433	protein-coding	5.41374608948489	5.61063523921807	5.35530716464687	4.9931423624742	5.40933774405212	5.30230796418373	5.91884249911892	5.46755924771831	0.344800434508721	0.2802742785268	0.592308919118337
Merged-chr19-43921580-3	chr19	43921482	43921682	+	901.922241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	18616.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	3.96406802081436	4.30604570294373	4.30974601635869	4.48316067893564	3.48889676575581	3.8719247874808	3.48403242406194	3.80485042836501	-1.80157201108823	0.00021591263503533	0.00387309613134571
Merged-chr4-155812384-4	chr4	155812280	155812480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207678)	promoter-TSS (NM_207678)	-109.0	NM_207678	56036.0	Mm.23492	NM_018856	ENSMUSG00000029068	Ccnl2	1700010A01Rik|1810019L15Rik|2010319M22Rik|AA409936|AW261738|Ania-6b|HCLA-150|Pcee|SB138	cyclin L2	protein-coding	8.2888056970679	8.4107842777251	8.19664731334795	8.15115420466782	8.41437232450065	8.14154973068862	8.59729611895727	8.19124306926605	0.112731772400337	0.518479412402003	0.77953711493731
Merged-chr11-103175219-4	chr11	103175109	103175309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019679, intron 1 of 26)	intron (NM_019679, intron 1 of 26)	4071.0	NM_019679	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	6.28243132831353	6.24840875809698	5.63188721265475	5.52645216557975	5.79678158352416	5.91372334052667	5.51873521840131	5.54269172474155	-0.412368889394114	0.186433303190408	0.484399930198578
Merged-chr17-8311037-4	chr17	8310916	8311116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134114)	promoter-TSS (NM_134114)	-72.0	NM_001357890	106489.0	Mm.311080	NM_134114	ENSMUSG00000073468	Sft2d1	5630401J11Rik|AA409698	SFT2 domain containing 1	protein-coding	6.84123092761307	7.22345023966528	7.08211089502217	6.91640047772115	7.01472955801771	6.85694795689098	6.84855234954865	6.48752922125795	-0.277251875356187	0.20265072533671	0.505235585945418
Merged-chr5-130079402-4	chr5	130079279	130079479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130476)	promoter-TSS (NM_001130476)	9.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	7.06550351317696	7.1293922179695	6.78554043146059	6.99965503018538	7.18624849671678	7.07740764680694	7.35549494127428	6.86762763954518	0.183314542181263	0.369486195315211	0.673692529630015
Merged-chr8-70549908-3	chr8	70549807	70550007	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	10232.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	5.82647026711599	5.27141203291709	5.8275636919683	5.58359298066136	3.90525000646333	4.18925838150523	4.032248412927	3.90674489956631	-3.84363393988415	5.08680506850566e-17	1.13502726636729e-14
Merged-chr12-85523300-4	chr12	85523191	85523391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49401.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	6.44241459167542	6.36027481066685	6.397120410529	6.02109665953541	5.67160998561008	5.98066078798092	5.52434273976804	5.38540696945539	-1.02899297675594	0.000173006936793832	0.00322536950079838
Merged-chr3-146331120-4	chr3	146331006	146331206	+	931.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47838.0	NR_033542	100038607.0	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	-	predicted gene 10636	ncRNA	4.88131859857187	5.01781825092936	4.54875386113846	4.11702968645592	4.88314110269741	4.80480910099053	4.39561377502495	4.31550877147672	-0.11255911511574	0.795544392924405	0.920897975671128
Merged-chr1-156474275-4	chr1	156474167	156474367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009230)	promoter-TSS (NM_009230)	61.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	6.67817987885677	6.91655007591822	6.79994478659038	6.94436377822421	7.1026799627966	6.94788414117901	6.69172061817144	7.18666624292237	0.212394208643393	0.311225454690324	0.62324859559111
Merged-chr2-18063876-4	chr2	18063819	18064019	+	991.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045539)	promoter-TSS (NR_045539)	-666.0	NM_001252560	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	5.78266536321047	5.79046981617374	5.26109771079082	5.89984990878634	5.94747488420022	5.5108105471333	5.75427369084675	5.97732441052603	0.159128328289465	0.581846252885591	0.816420227529328
Merged-chr9-62998806-4	chr9	62998708	62998908	+	857.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-17929.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	4.12902580476012	3.83656472628096	3.63389203333967	3.67819608643262	4.14467639562544	3.55677228478956	4.02645461936885	3.99752575255965	0.360898272691275	0.452916189237606	0.73714093002569
Merged-chr9-118612393-4	chr9	118612336	118612536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	5727.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.42881989862767	6.22277772812785	6.70050716783409	6.43841694270784	6.64939800379489	6.67526639440108	6.49885015275761	6.73792281348693	0.275274837507586	0.207973569044729	0.512108434400184
Merged-chr1-171688603-2	chr1	171688503	171688703	+	919.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_007649, intron 1 of 3)	MER20|DNA|hAT-Charlie	6611.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	3.41699630496334	3.59708599450686	3.47245150964942	2.97602830637297	3.59682112748111	3.47514400422078	3.34738708774509	3.35827415435384	0.250894608253953	0.654481865665428	0.855635636382923
Merged-chr6-146438236-3	chr6	146438157	146438357	+	952.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 2 of 56)	intron (NM_019923, intron 2 of 56)	63966.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	2.9930984900707	3.04430890237752	3.5617954793479	3.02344355974137	3.25921854193925	3.32765937496016	4.00903424959827	3.79396869811248	1.54994924719796	0.0106455081379591	0.0826051045188914
Merged-chr18-58615376-4	chr18	58615219	58615419	+	796.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44163.0	NM_025478	66307.0	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	3.7018931158947	3.9792364270675	3.95331069912706	3.4633879212822	3.88238539721489	3.82173694654535	3.84229471046966	3.80647917854987	0.179008930078939	0.705732120825261	0.881821802733794
Merged-chr13-41469725-4	chr13	41469624	41469824	+	981.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	17636.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	5.76266531143821	5.85188339707084	6.14553899730648	5.87140168102616	5.4587760595271	5.56089592153316	5.15175866805222	5.27997305027937	-0.909668627590461	0.00110716052038243	0.0145749174552064
Merged-chr2-116922794-4	chr2	116922688	116922888	+	954.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22636.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	4.74027662781955	4.57045439922908	5.19785719948883	5.13029997990487	4.50629742024447	4.51412926144978	4.79429140813599	5.10946542805843	-0.38765376735745	0.313371179791984	0.625250977751096
Merged-chr7-127968351-4	chr7	127968251	127968451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139149, intron 1 of 14)	intron (NM_139149, intron 1 of 14)	872.0	NM_139149	233908.0	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	5.04693547047654	5.32494529696119	5.33314688706264	4.8455901497916	5.42775216247429	5.03646871268189	5.1884044905501	5.38487693202432	0.255876309097264	0.42520250483419	0.716745286615087
Merged-chr11-84818207-4	chr11	84818112	84818312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145433, intron 2 of 4)	intron (NM_145433, intron 2 of 4)	1303.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	5.2969035080263	5.35309123598095	5.06550890934667	5.02997768231611	5.55767331707783	5.34604255510204	5.38655732347981	5.4372689841888	0.46542608011907	0.108130868835746	0.362895332776631
Merged-chr5-90906667-4	chr5	90906540	90906740	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009140)	TTS (NM_009140)	2741.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	3.57890584246506	4.45727534981214	3.96971108235817	3.35303056639533	4.33461141496368	4.09536533261881	3.74550541542488	3.64056595422646	0.184502243896365	0.746632945076063	0.900242338303429
Merged-chr10-17788681-4	chr10	17788597	17788797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-7522.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	7.16240620761425	7.61378156833261	7.06839149069183	6.26372955903185	7.70582549248193	7.6081786915405	7.19430017823669	6.94690302671715	0.393664546179335	0.193050972036053	0.493169261693076
Merged-chr13-119790046-3	chr13	119789957	119790157	+	663.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302550, intron 2 of 6)	intron (NM_001302550, intron 2 of 6)	401.0	NM_001302547	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	3.50852701235362	3.17573620481163	3.40140051822671	3.35005435139301	3.12865954420021	3.5169132883748	3.33144712396855	3.65278298342384	0.190151939209598	0.725858716062211	0.890921883682774
Merged-chr7-141579211-3	chr7	141579062	141579262	+	969.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 1 of 21)	intron (NM_001357068, intron 1 of 21)	16982.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	4.39405063093718	4.13251480191275	4.27803626008223	4.08674307244693	3.98515924232198	3.90770803650714	4.03833976276461	4.00368956254187	-0.614740550198759	0.141858925996632	0.419040693203243
Merged-chr5-59853131-3	chr5	59853024	59853224	+	905.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C2|LTR|ERVK	132878.0	NR_040683	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	3.77119023271633	3.52947931089098	3.77175448278104	3.26661199123999	3.9838899453776	3.26277804532648	3.80376713897232	4.03772921505875	0.637314399774245	0.243897969488194	0.554947209992653
Merged-chr3-108085925-4	chr3	108085830	108086030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346665)	promoter-TSS (NM_001346665)	-46.0	NM_001358018	791415.0	Mm.374791	NM_001358018	ENSMUSG00000056411	Gm12500	-	predicted gene 12500	protein-coding	6.32579539323174	6.43848146835354	6.5455328583839	6.23701233627896	6.51432118917289	6.53881382752081	6.36554693282297	5.80925869792614	-0.0621808049662609	0.807115984952495	0.925622864256334
Merged-chr9-118040881-4	chr9	118040782	118040982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001048146, exon 1 of 7)	5' UTR (NM_001048146, exon 1 of 7)	360.0	NM_013727	27215.0	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	7.19168938224288	7.08121329700989	6.91043188554375	7.09951818902792	7.60768238103534	7.5617478216655	7.82446386830907	7.48354953300319	0.736578350841238	6.44451971589158e-05	0.00140108247067773
Merged-chr8-81014126-7	chr8	81014055	81014255	+	910.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027554, exon 1 of 10)	exon (NM_027554, exon 1 of 10)	751.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	4.05578783491601	3.9319119951184	4.10385552901039	3.29003095814862	4.13694286823855	4.1340306002946	3.98965748592073	4.59575397517188	0.929429233701826	0.0648940372821991	0.270946309227455
Merged-chr2-117249775-4	chr2	117249658	117249858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026620)	promoter-TSS (NM_026620)	19.0	NM_026620	68215.0	Mm.219389	NM_026620	ENSMUSG00000027349	Fam98b	2610510H03Rik	family with sequence similarity 98, member B	protein-coding	6.27196186673167	6.53157640425353	6.15055299969307	6.26800211553141	6.44495415131307	6.74176153647937	6.36968501990404	6.49901151070623	0.299465145353951	0.186464311424459	0.484462812924571
Merged-chr7-4924311-6	chr7	4924247	4924447	+	841.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_201355, exon 3 of 3)	exon (NM_201355, exon 3 of 3)	1467.0	NM_001358883	269854.0	Mm.42652	NM_201355	ENSMUSG00000035285	Nat14	BC047219	N-acetyltransferase 14	protein-coding	3.27910455312956	3.35667665171957	3.33780816921924	2.84738917018925	3.24181859829552	3.51051764996988	3.20689259898221	3.59294688342783	0.658409295881588	0.255259547081826	0.566852976271238
Merged-chr1-136582070-4	chr1	136581958	136582158	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42843.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	5.55631216217438	5.82439127910251	5.16672406766146	5.68309100404909	5.98621214865831	5.89004868775019	5.63632624011828	5.8069546679113	0.411114533651416	0.146936202897587	0.42761123563813
Merged-chr18-67389864-3	chr18	67389824	67390024	+	846.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026473)	promoter-TSS (NM_026473)	-807.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	3.66938216670946	3.80054617334179	3.42723835020377	3.60831420142937	3.77752583192899	3.84381893476071	3.8578053145583	4.08877825202741	0.765844740454972	0.0984540865879342	0.343994301133918
Merged-chr5-72270160-1	chr5	72270060	72270260	+	1000.0	f0_balb.idr	intron (NR_003966, intron 15 of 22)	intron (NR_003966, intron 15 of 22)	66817.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	4.00979734540441	3.57606412008735	3.81478613561404	4.0918254157357	3.91033718704312	3.82379714982503	3.69072413397139	4.21589985592122	0.0775880018398312	0.871212235769581	0.951579960696581
Merged-chr1-181230934-1	chr1	181230834	181231034	+	637.333313	f0_balb.idr	Intergenic	Intergenic	-18956.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	3.15490194925379	3.24978158938788	3.20823502282497	3.15367618157619	2.69170606082266	2.96085689174512	2.84366517112628	2.63051056085986	-1.92533642525135	0.00381918854619286	0.0386474298449618
Merged-chr19-55293326-4	chr19	55293241	55293441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027976, intron 17 of 21)	intron (NM_027976, intron 17 of 21)	22695.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	5.77641858698563	6.15991092732402	5.99438119133485	5.22962413503115	6.43829407431442	6.3922808091838	6.32495340061172	6.01203251660427	0.752397142968165	0.0114535113254699	0.0869506700763251
Merged-chr12-3282692-4	chr12	3282591	3282791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	Charlie1a|DNA|hAT-Charlie	27278.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	5.9352073516872	6.37024792223812	6.16567586521209	5.63924130718083	6.34522894264494	5.94300089932203	5.83584628906642	5.81227963498492	-0.0497425110369907	0.864952018554486	0.949366533981338
Merged-chr13-110558529-3	chr13	110558412	110558612	+	654.083313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163468.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	3.11328140252624	2.87786082415656	3.11363273999988	2.72096802621169	4.32091852706601	3.69260124293194	4.00768131363981	3.76933550518293	3.85968097360433	6.40309485484021e-11	5.05844493532377e-09
Merged-chr7-4238594-2	chr7	4238486	4238686	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081239, exon 4 of 6)	exon (NM_001081239, exon 4 of 6)	832.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	2.71761829548777	2.64842031826635	2.91784739115955	2.76802372686652	2.99334126178074	3.02728820874437	3.07828971752801	3.08946743592791	1.22707248636686	0.0407347628108057	0.204029250729037
Merged-chr1-143739599-4	chr1	143739493	143739693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023505)	promoter-TSS (NM_023505)	-22.0	NM_023505	69367.0	Mm.272727	NM_023505	ENSMUSG00000018196	Glrx2	1700010P22Rik|AI645710|Grx2	glutaredoxin 2 (thioltransferase)	protein-coding	7.03608485228906	6.80735270750483	6.75839798044674	7.13631637627079	6.85576160115215	6.85916820135519	6.90313805867031	6.97138888693432	-0.0826072511860424	0.683602225880518	0.870394242877558
Merged-chr9-65575525-4	chr9	65575442	65575642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 1 of 5)	MIR|SINE|MIR	4545.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	6.19966713732421	6.15893241373358	6.66985097644059	6.78320196863229	6.7910421243331	6.35783447256917	6.44936527188881	6.54345581641708	0.0842017027461929	0.743342275850476	0.89894073126818
Merged-chr10-88741613-4	chr10	88741532	88741732	+	932.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025859, intron 4 of 5)	C-rich|Low_complexity|Low_complexity	10218.0	NM_025859	104303.0	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	4.73211432620236	4.25532846936443	4.65425897028455	5.04218390696999	4.51196446038246	4.78859117079479	4.8864824164701	5.00270938824489	0.179091960295476	0.648797178966696	0.852432727220627
Merged-chr4-34238067-3	chr4	34238008	34238208	+	810.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-188041.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	3.5476892041901	3.41368338293177	3.44270253562759	3.58972823913008	3.34215799188293	3.31248391678468	3.37404014287289	3.49458509501479	-0.429827269024971	0.396473526768816	0.69519327480908
Merged-chr7-99107029-4	chr7	99106911	99107111	+	982.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 3 of 14)	intron (NM_178635, intron 3 of 14)	34133.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	4.4966841018708	4.48439419943772	4.53850455541033	5.03052115339668	4.53705908496212	4.17996787779508	4.43492042156924	4.53558606843221	-0.546350734784125	0.171549689077989	0.46488750928509
Merged-chr3-75743826-3	chr3	75743723	75743923	+	973.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88092.0	NR_040539	69193.0	Mm.374088	NR_040539	ENSMUSG00000099370	Platr10	2410007B07Rik	pluripotency associated transcript 10	ncRNA	4.476707810661	4.43161845541537	4.8741103766562	5.0286442794257	4.05302151334903	4.03053350663064	4.6862124998751	4.3870917856476	-0.957109023163963	0.0269270421392226	0.155985763516539
Merged-chr1-172515573-4	chr1	172515486	172515686	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5544.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	4.91269968381924	4.79084578394278	4.76250643314669	4.94046308950025	5.03287391885704	5.08635091736555	4.95869525017766	4.97943893839855	0.303444824781214	0.333351984916408	0.644131513179354
Merged-chr19-5489193-4	chr19	5489092	5489292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153768)	promoter-TSS (NR_153768)	-813.0	NR_153769	71711.0	Mm.27697	NM_027877	ENSMUSG00000024906	Mus81	1200008A18Rik|AI182501|AW045863	MUS81 structure-specific endonuclease subunit	protein-coding	7.3261160173644	7.57297380507299	6.85106726740859	7.0640347359055	7.54556197245076	7.80852195129841	7.61833879230809	7.39324355743363	0.490891894226486	0.0248041370307733	0.147612734481722
Merged-chr18-73815553-4	chr18	73815436	73815636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145494)	promoter-TSS (NM_145494)	-144.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	8.33758582320498	8.19797504300837	8.12354702295083	8.43108364008387	8.49216610009425	8.43137104160154	8.67987380584174	8.4687285738907	0.300359046938259	0.0629590027115515	0.266050751247063
Merged-chr3-96812602-4	chr3	96812531	96812731	+	974.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163497, intron 1 of 3)	MIRb|SINE|MIR	1890.0	NM_018767	54215.0	Mm.34693	NM_018767	ENSMUSG00000038304	Cd160	AU045688|By55	CD160 antigen	protein-coding	5.40846048015476	5.27798642703071	4.95781512880049	5.5551114964005	5.10593908098267	5.13629840237513	4.93438029836057	5.5584450527492	-0.235365176067304	0.477835362898343	0.753975688223036
Merged-chr3-152569367-4	chr3	152569273	152569473	+	896.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355635, intron 6 of 8)	intron (NM_001355635, intron 6 of 8)	-97540.0	NR_040386	99542.0	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA	4.37548847724887	3.99258126243085	4.33492625808897	4.55385941500392	4.24373073505501	4.06921196561953	4.35607924910027	4.15258384202208	-0.316851868390114	0.445209938586871	0.731298032078032
Merged-chr5-143180777-4	chr5	143180643	143180843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045482)	promoter-TSS (NM_001045482)	32.0	NM_001359235	57782.0	Mm.320419	NM_021326	ENSMUSG00000061898	Rbak	-	RB-associated KRAB zinc finger	protein-coding	6.58841092896231	7.22341816168169	6.9282283056623	6.77616388130069	7.09066632781249	6.86441013643966	6.74309601777572	6.84343578495988	-0.0015843360897051	0.994380472811066	0.997969705205021
Merged-chr16-91476547-3	chr16	91476437	91476637	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	-8678.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	5.07079913864865	5.04765376073901	4.98326618224949	5.26236079715057	4.04340246897702	4.0348528236442	4.24671917875819	4.31436374847939	-2.16285447738545	1.95372649172698e-08	9.82092499679623e-07
Merged-chr11-96935233-4	chr11	96935150	96935350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_146026, exon 3 of 3)	3' UTR (NM_146026, exon 3 of 3)	5926.0	NM_146026	217138.0	Mm.342551	NM_146026	ENSMUSG00000047040	Prr15l	Atad4|BC022765|E230006A12Rik	proline rich 15-like	protein-coding	5.8771284021551	5.55957772012756	5.63112506892756	5.67079971023349	6.1027564326596	5.80693995981916	5.8921029788699	5.87398198976808	0.404595132894036	0.111341369906695	0.368698618619051
Merged-chr17-72945405-3	chr17	72945319	72945519	+	717.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	27114.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	3.20296735792496	3.28031103420326	3.41583727651957	3.25634765544763	3.17283151451488	2.90702366227253	3.24725593513565	3.08083239866139	-0.688059852454377	0.227378587048513	0.536073016711142
Merged-chr13-17695029-4	chr13	17694938	17695138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138654)	promoter-TSS (NM_138654)	-273.0	NM_138654	192136.0	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	9.32675509388915	9.32630735629893	9.31961322581815	9.38229615480617	9.36180738800847	9.26927513221486	9.41931959736377	9.14617789911201	-0.0436684286435593	0.753142242493817	0.902768018969164
Merged-chr4-55529488-2	chr4	55529388	55529588	+	856.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_010637, intron 4 of 4)	intron (NM_010637, intron 4 of 4)	2987.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	2.77191904170905	2.51232020835556	2.60026358646287	2.44689286467452	2.56445425884454	2.42923197529579	2.39491592641322	2.40049887331486	-0.710623006424208	0.320528008563423	0.632376049712731
Merged-chr16-64873561-2	chr16	64873461	64873661	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21560.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	4.15133714205515	4.05665682585775	4.01427016718076	4.11538396515171	3.94847383925518	4.13714620419233	4.0896472341229	3.80241529908216	-0.240205943018891	0.567192129444074	0.808159943760313
Merged-chr13-30987105-4	chr13	30987008	30987208	+	975.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13061.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	4.92805892591762	4.57661449646109	5.05773329717354	4.83601861393192	4.55834941725542	4.75799876813622	4.93811346736802	4.9915358198405	-0.0843445393149019	0.809218545012875	0.926362488588753
Merged-chr15-6441852-3	chr15	6441828	6442028	+	756.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-3405.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	3.78210750335894	3.45158487808809	3.28622053186233	3.01350666766963	3.02784804031492	3.62834822846972	2.85866342270374	3.39998695374489	-0.52514791357347	0.427078017184734	0.718329235229673
Merged-chr6-29517336-4	chr6	29517227	29517427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9298.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	6.08526476991818	6.226939368834	5.95492393573925	6.15594226264017	6.15183925882438	6.0358895081911	6.07584348008473	6.21985268022591	0.0136749454261855	0.952763435776225	0.983276598943455
Merged-chr18-64987010-4	chr18	64986879	64987079	+	976.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-36548.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	4.51833425132676	5.17578468648323	4.65464588012111	4.70076305580652	5.17098382978566	5.02736666745289	4.90138791786498	4.95619683061945	0.4661049554311	0.181941169811277	0.478615955576793
Merged-chr13-89505044-4	chr13	89504934	89505134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35602.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	4.26706872554028	4.19780390508663	4.57633032227044	4.28812024678288	5.24037124092165	5.14907117547547	5.76459906993607	5.24426437055951	2.07803749651349	4.65587984704019e-09	2.63016564787678e-07
Merged-chr6-22343369-4	chr6	22343282	22343482	+	846.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138587, intron 1 of 9)	intron (NM_138587, intron 1 of 9)	12699.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	3.69851638106103	3.88146531580138	3.69899661522561	3.88080680733304	3.90499374685213	3.75856510007253	4.03072527814704	4.20973357614742	0.51338111038073	0.252872197564997	0.564097303633136
Merged-chr2-11429766-4	chr2	11429641	11429841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31241.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	8.81068837694862	8.91259925997823	9.03817243194805	8.97363413205295	8.84426087186056	9.04955505222667	8.99809042056519	8.77357766380417	-0.0226083950410593	0.87992652651015	0.955031322803
Merged-chr9-96376062-4	chr9	96375948	96376148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11617.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	5.88897505823991	5.91811478764717	5.96188055956797	5.59733763633418	6.56342450919467	6.40894844815191	6.16342165919683	6.5860574843949	0.94488692455656	0.000111934098322637	0.00222987886496137
Merged-chr6-84751595-4	chr6	84751482	84751682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 19 of 21)	Lx5|LINE|L1	-157674.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	6.13317597583861	6.40680398323553	6.73824208933926	6.4967761117394	6.43745316361383	6.65649282236517	6.52849739564027	6.50915000215425	0.0984879001274162	0.666382714953954	0.862000786313879
Merged-chr15-102331738-4	chr15	102331632	102331832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021713)	promoter-TSS (NM_021713)	23.0	NM_021713	60315.0	Mm.251638	NM_021713	ENSMUSG00000001285	Myg1	0610023A07Rik|2810433J21Rik|5830429P19Rik|AI325965|Gamm1	melanocyte proliferating gene 1	protein-coding	6.19364910001248	6.27189503575663	6.15445964582046	6.06535292810351	6.28917093842031	6.24652208527294	6.34616442507483	6.37425199289151	0.225937044996448	0.306456527092576	0.61895661829415
Merged-chr4-46650204-4	chr4	46650123	46650323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198664)	promoter-TSS (NM_198664)	-24.0	NM_198664	381605.0	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	6.84275110363041	6.83523978555911	6.44204235977355	6.79433509084302	6.87319105830766	7.23435347880482	6.91431912055999	7.0062790123119	0.370160618797675	0.0790584065681145	0.304244070129316
Merged-chr16-64935130-3	chr16	64935041	64935241	+	829.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008310, intron 2 of 2)	MLT1A1|LTR|ERVL-MaLR	83140.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	3.00180424836743	2.9942013991648	3.08511042712069	2.70547795022644	3.98323968771208	4.05399788794489	4.14456122114229	4.26996180803207	4.43627935026644	1.15898878776552e-13	1.49448664718047e-11
Merged-chr3-79566846-4	chr3	79566754	79566954	+	961.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	825.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	4.60520130181981	4.85019002083818	5.22607776326564	4.9772235073294	4.80468292168793	4.78398503288737	4.78786583662304	4.98361619524287	-0.18963772930144	0.578207916294029	0.81458069221668
Merged-chr9-101061198-2	chr9	101061098	101061298	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13564.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	3.60419466814293	3.73727369374054	3.60467861778226	3.4661265940537	3.69136244848697	3.77690409028751	3.83797770581224	3.6027213233001	0.404853904900553	0.386766231101775	0.687797608117846
Merged-chr11-59809838-4	chr11	59809774	59809974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045686)	promoter-TSS (NR_045686)	165.0	NM_001271356	216805.0	Mm.339640	NM_146018	ENSMUSG00000032633	Flcn	AU014660|B430214A04Rik|Bhd|FLCL	folliculin	protein-coding	6.14532660175962	6.10593042984176	6.00061113890395	5.54359557934991	6.35560660942756	6.26145775195058	5.70216899475052	6.34142903246256	0.373038145065314	0.19087477618212	0.490284569083293
Merged-chr9-83593073-3	chr9	83592970	83593170	+	910.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 2 of 3)	intron (NM_172507, intron 2 of 3)	44732.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	3.66311447727063	4.30247828239314	4.27706076173755	4.2346779760068	3.92751673204385	3.72073678356303	3.76417591579054	3.46833519140192	-1.14862748763065	0.0223246641701773	0.137780542331166
Merged-chr12-55484701-8	chr12	55484590	55484790	+	844.5339359999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7957.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	4.85922956848758	5.18764706151803	4.6030547135711	3.7238498355292	5.07972942253811	4.89454011483327	4.15795790009149	4.057186433818	-0.215776706110056	0.786750377530293	0.917135960200115
Merged-chr3-59206161-3	chr3	59206050	59206250	+	752.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	4732.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	3.9607152644812	4.25500544072895	3.91278878599491	3.78185384107697	3.58806656908893	4.17819808985112	3.49997888408029	3.91043835804919	-0.477842630876479	0.337241199217693	0.647016127715841
Merged-chr13-12469747-3	chr13	12469639	12469839	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8001.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	2.9392320779537	2.90502493260571	3.0602026078051	3.04623219588881	3.09879995849979	3.04647273439447	2.99077545740063	2.99981631800208	0.184660631136703	0.747144716908946	0.900426904013779
Merged-chr4-152318880-6	chr4	152318687	152318887	+	805.847229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033489)	promoter-TSS (NM_001033489)	-162.0	NM_001033489	433809.0	Mm.156205	NM_001033489	ENSMUSG00000058498	Rnf207	D330010C22Rik|Gm143	ring finger protein 207	protein-coding	2.8710605767919	2.87844843285881	2.93048006192982	2.98622281831034	2.75194172194073	2.62960149965967	2.8612620124227	2.86999196579693	-0.645297604782231	0.303022989873666	0.615539788674154
Merged-chr12-32061321-4	chr12	32061233	32061433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011158)	promoter-TSS (NM_011158)	-54.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	5.90256310618949	5.93078516085305	5.90360006796708	6.10784077159853	6.29877111589683	6.36333202226379	6.38680680082634	6.4629922201405	0.605679611431768	0.00814597175498897	0.0680063480586864
Merged-chr3-10466087-4	chr3	10466000	10466200	+	880.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25970.0	NM_001127191	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	4.40034598075278	4.45084941752784	4.76220889395321	4.51367072913322	5.00798337628205	4.48365130837965	4.4267668048454	4.68722636081311	0.32797470222926	0.387082055633069	0.688085997159096
Merged-chr9-61025556-4	chr9	61025455	61025655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8486.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	6.50278227053235	6.35705173655033	6.40158448454261	6.41300060829139	6.62395735965957	6.52345354127685	6.47070565910233	6.37912746551507	0.132899024828125	0.528842374194508	0.785320670621494
Merged-chr7-132308032-3	chr7	132307935	132308135	+	839.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 1 of 7)	MER34A1|LTR|ERV1	-7629.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	3.56445896699369	3.33668585084338	3.81500664681183	3.79439588460816	3.51449581087497	3.68140971841058	3.49544326037091	3.66881316352309	-0.185520838207046	0.712061383103994	0.884715833326134
Merged-chr12-40464069-4	chr12	40463981	40464181	+	854.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	18028.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.5938502138498	4.68198711710758	5.0241286651365	4.68430867736808	4.6653013154192	4.07125224773123	4.31454308160957	4.4235693900367	-0.781264842472042	0.0499352436087705	0.231576047209874
Merged-chr11-119022926-4	chr11	119022815	119023015	+	918.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007623)	promoter-TSS (NM_007623)	-106.0	NM_007623	12416.0	Mm.14547	NM_007623	ENSMUSG00000025577	Cbx2	M33|MOD2|pc	chromobox 2	protein-coding	5.21221213310933	5.04377802495673	4.54563622697957	4.70364842757138	5.0101175497758	4.67931543856778	4.98135932125519	4.63168396420126	-0.102980785683661	0.778784601537669	0.913793464563878
Merged-chr3-9082497-3	chr3	9082389	9082589	+	806.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20525.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	3.69404637348525	3.55098256336311	4.09228224570078	3.5028382879245	3.36621859063539	3.70561858257966	3.32856866110233	3.88457932344555	-0.420820991384223	0.435476059730017	0.724637878005047
Merged-chr10-60269816-4	chr10	60269732	60269932	+	886.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7796.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	4.61943829063283	4.75012101478809	4.50078677401642	4.71847353422666	4.43627874740041	4.54414120658782	4.39498611739024	4.31945915968537	-0.524148572123256	0.146269290832458	0.426360696677321
Merged-chr2-57331436-4	chr2	57331348	57331548	+	822.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010274, intron 6 of 16)	RSINE1|SINE|B4	93066.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	4.3583729716426	3.98313083434067	4.19218345866144	4.33970206651115	4.12431851577375	4.01256661606806	4.25934928772486	4.09691744910682	-0.268432387024677	0.513427313788331	0.77646733267772
Merged-chr5-76951255-4	chr5	76951167	76951367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356973)	promoter-TSS (NM_001356973)	-35.0	NM_001356974	67054.0	Mm.182931	NM_025939	ENSMUSG00000029247	Paics	2610511I09Rik|ADE2H1|AIRC|PAIS	phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	protein-coding	8.45748079029479	8.83904879209706	8.63868122933071	8.69078719893453	8.80558429176828	8.83457275360886	8.89180348052794	8.48942975602625	0.123958407344749	0.459831908688294	0.742271214480192
Merged-chr17-8846675-4	chr17	8846569	8846769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	-3316.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	6.17811502821663	5.95864697853935	7.11041225051449	6.70969943529131	5.87456955731415	5.84415045575495	6.12698098880315	6.25347643400159	-0.804907448439933	0.00972634756858008	0.0773791990146374
Merged-chr4-136431488-3	chr4	136431385	136431585	+	889.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285484, intron 1 of 1)	intron (NM_001285484, intron 1 of 1)	6873.0	NM_001285484	15552.0	Mm.40573	NM_008309	ENSMUSG00000070687	Htr1d	5-HT-1D|5-HT1D|AI853647|Gpcr14|Htr1db	5-hydroxytryptamine (serotonin) receptor 1D	protein-coding	4.17454632287268	3.8829402974815	3.91200340646198	4.17470198187118	3.82944604517576	3.76011609988033	3.43861215849502	3.90968462746741	-0.85402965491592	0.0717926113885388	0.287878220158008
Merged-chr12-12278643-6	chr12	12278569	12278769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	16530.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	6.63117056542662	6.95053754904052	7.32670178355984	6.88771010848271	6.61087856243447	7.0852742565109	6.51480375641752	6.87754872973484	-0.259082165884754	0.283425913431666	0.59551104748873
Merged-chr17-22225183-1	chr17	22225083	22225283	+	811.0	f0_c57.idr	intron (NM_001205095, intron 1 of 4)	Lx2|LINE|L1	431.0	NM_001205095	240038.0	Mm.227945	NM_001205095	ENSMUSG00000096433	Zfp994	EG240038|Gm4944	zinc finger protein 994	protein-coding	2.90603492741061	2.89365078965144	2.82154653062135	2.402769780115	4.21840866376775	3.580209843987	4.08806157359782	3.39360801812716	5.16500173568818	1.80623132802154e-11	1.56596516074599e-09
Merged-chr6-115134924-2	chr6	115134824	115135024	+	736.8000490000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013681)	promoter-TSS (NM_013681)	22.0	NM_001111015	20965.0	Mm.441431	NM_013681	ENSMUSG00000009394	Syn2	2900074L19Rik|AI836018|AI841723	synapsin II	protein-coding	3.35176220578595	3.07701105045108	3.19939124450211	2.75332715761144	3.12489981976606	2.93393261051341	3.07437846712939	2.82423650799678	-0.44554174971907	0.483752145753191	0.758009278444276
Merged-chr11-67965593-4	chr11	67965461	67965661	+	775.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361351)	promoter-TSS (NM_001361351)	81.0	NM_027963	71860.0	Mm.441823	NM_027963	ENSMUSG00000020904	Cfap52	1700019F09Rik|4933417B11Rik|WDRPUH|Wdr16	cilia and flagella associated protein 52	protein-coding	4.15838692513632	3.862545219625	4.39765270982919	4.0176596030858	3.89945233105479	4.0414112675999	3.90286719659229	4.11189428016877	-0.337712383050109	0.438938626173187	0.726833216111016
Merged-chr2-131353606-4	chr2	131353508	131353708	+	623.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178607)	promoter-TSS (NM_178607)	-716.0	NM_178607	51902.0	Mm.477523	NM_178607	ENSMUSG00000048911	Rnf24	2810473M14Rik|4930505A13Rik|AI317164|C86507|D2Ertd504e	ring finger protein 24	protein-coding	3.89374868901445	3.51163176632111	3.64280441808438	3.55698416818032	3.98564130507159	3.92016171710845	3.45292354948276	3.79730519560301	0.468375889937816	0.337448082927986	0.647156596921222
Merged-chr15-5188172-4	chr15	5188071	5188271	+	904.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355621, intron 2 of 5)	intron (NM_001355621, intron 2 of 5)	2611.0	NM_001355621	67515.0	Mm.254979	NM_026213	ENSMUSG00000022151	Ttc33	2410099M07Rik|2900001O04Rik|AI507072|AW538342|Osrf	tetratricopeptide repeat domain 33	protein-coding	4.76981002134572	4.42772585993005	4.63053253648012	4.77958795706141	4.22099221420384	4.15318830748559	4.41023069574051	4.51122714093466	-0.772185329889375	0.0428997939407205	0.210682556716701
Merged-chr6-116724670-4	chr6	116724565	116724765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7907.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	5.67051070934887	5.80897006211727	5.69860769498145	5.90151635251926	6.21961426755529	6.5812023852199	6.23422228698296	6.1319446986759	0.806737115066464	0.00122415119180311	0.0158166378074702
Merged-chr18-38311463-2	chr18	38311363	38311563	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361268, intron 8 of 10)	B3A|SINE|B2	14658.0	NM_001164621	56736.0	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding	2.92838192777744	3.22952704325321	3.11601313737073	2.31546009718717	3.12953627419495	3.04171938317835	3.26493522124745	2.99255533923116	0.579226322536073	0.467423368494817	0.746986879554531
Merged-chr17-70970356-4	chr17	70970269	70970469	+	825.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	20147.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	3.77037716504587	4.10393493240817	4.10268475193122	3.93357386861339	4.36584794876147	4.22869002301474	4.59571125871966	4.32405524332374	1.0095431471766	0.012846292249403	0.094309033164428
Merged-chr6-58831028-1	chr6	58830928	58831128	+	762.0	f0_balb.idr	promoter-TSS (NM_001361967)	promoter-TSS (NM_001361967)	-437.0	NM_001361967	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	4.01842342759868	3.73212836093348	3.74671537812078	3.89708296905246	3.61351399063717	3.51491324216856	3.57159716093719	3.63916189018562	-0.827159759315067	0.0806792129529874	0.308129561678833
Merged-chr5-140568467-4	chr5	140568366	140568566	+	948.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3399.0	NM_030022	77998.0	Mm.160040	NM_030022	ENSMUSG00000036586	Grifin	E130101O17Rik	galectin-related inter-fiber protein	protein-coding	4.70424784199116	4.56061326612233	4.37743015907787	4.24166098892052	4.74980733953988	4.68410023286947	4.26261106154081	4.838383274778	0.407175217711827	0.290796904714711	0.603089446131769
Merged-chr15-93268225-4	chr15	93268119	93268319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346785, intron 1 of 7)	intron (NM_001346785, intron 1 of 7)	6960.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	6.29284601781346	6.19157632254356	6.60591495950205	6.44812373870216	6.47979706224894	6.13243966925177	6.36834303000051	5.92495314389459	-0.209539984791257	0.398312230465852	0.696579107450158
Merged-chr9-13671370-4	chr9	13671259	13671459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	8899.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	6.05246228870402	5.89553009867086	6.41075620591271	6.50244022709647	5.79624463185256	5.53964781580983	5.9374132851451	5.6379385362097	-0.805246436083464	0.00349210251205845	0.0360026945401999
Merged-chr6-83598205-4	chr6	83598095	83598295	+	989.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25691.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	5.63504527667828	6.42530240240161	6.08684951014193	5.49601590714321	5.76583416854109	5.67228168805436	5.87320998693377	5.06516829321283	-0.535531960633284	0.122237829350519	0.38741395063409
Merged-chr1-172314284-4	chr1	172314197	172314397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080419, intron 1 of 6)	intron (NM_080419, intron 1 of 6)	1930.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	7.4263865898433	8.23615373973622	7.87094857600431	7.49342264479417	7.66860889477651	7.30740100280363	7.1053403766649	6.97846174161195	-0.659006830334584	0.00917418436780561	0.0741764658192915
Merged-chr10-41475458-2	chr10	41475358	41475558	+	981.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164433)	promoter-TSS (NM_001164433)	-856.0	NM_001164433	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	3.18862592052138	3.2347680651525	3.1264945249282	3.26280881090205	3.11529082774234	3.23753778748244	3.62858774429546	3.24700158939526	0.404874134866737	0.464162932839008	0.745275025262775
Merged-chr7-141403531-4	chr7	141403436	141403636	+	729.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011528)	TTS (NM_011528)	10589.0	NM_172116	213350.0	Mm.290953	NM_172116	ENSMUSG00000051007	Gatd1	BC023835|D230016J19Rik|Pddc1	glutamine amidotransferase like class 1 domain containing 1	protein-coding	3.80011796325946	3.80131874023479	4.05090206302915	3.79211819505448	3.9468216044489	3.80512926367135	4.16102209122184	4.25707868321752	0.529374583699359	0.227315744384679	0.535996291786981
Merged-chr4-53228673-4	chr4	53228573	53228773	+	909.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17523.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	4.55016234441069	4.24584252354646	4.51224119988231	4.52396765963887	4.51646970097237	4.51755152011047	4.32543143936314	4.14951547538159	-0.172238130884701	0.653353152648696	0.854997557892684
Merged-chr17-34649393-4	chr17	34649285	34649485	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017406, intron 5 of 17)	intron (NM_017406, intron 5 of 17)	2239.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	4.92890539121825	4.94845263444366	4.51291984366203	5.00282500705227	5.2192758131744	5.03104358997023	5.00787612308612	5.06139546499178	0.413995216193089	0.208648169374554	0.513007192521551
Merged-chr17-26536406-1	chr17	26536306	26536506	+	604.0	f1_c57bl6.idr	Intergenic	Intergenic	-25106.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	2.70460136355703	2.81154768053695	2.70494731618558	2.28400710669862	2.85250194152456	2.36849599130757	2.63189593881405	2.76443036768483	0.124794757105866	0.869256489481299	0.950909180764279
Merged-chr5-96160683-4	chr5	96160568	96160768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144910, intron 1 of 11)	intron (NM_144910, intron 1 of 11)	879.0	NM_001285511	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	5.49144241432138	5.26297114315529	5.18139844569814	5.80724778923147	5.45503296298055	5.69334659317912	5.6432745989115	5.31130627516825	0.0846379967502915	0.785132795476004	0.916419176427004
Merged-chr11-34034965-4	chr11	34034860	34035060	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	MIRc|SINE|MIR	-11968.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	5.59843553278313	6.00026763133024	5.31397212461014	4.93266732848266	5.65247940916977	5.79850256680779	5.37936348773959	5.17578959001882	0.015692553576892	0.965121984790607	0.98769425730755
Merged-chr11-61839524-7	chr11	61839407	61839607	+	973.26532	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013881, intron 5 of 26)	B1_Mur4|SINE|Alu	15585.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	4.4471927439502	4.50078241262878	4.36150976471413	4.39577178451199	4.47272972676855	4.69724767992156	4.20371738354474	4.48613611024997	0.111692381745229	0.764970691279604	0.907936316462806
Merged-chr2-143962354-3	chr2	143962247	143962447	+	646.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 10 of 23)	intron (NM_024281, intron 10 of 23)	47016.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	3.39803399793507	3.37069670389141	3.60294784698521	3.39292320143564	3.47447549560508	3.12446686404542	3.58706275705241	3.0857989676881	-0.346755684241432	0.534565122586274	0.789286995820758
Merged-chr3-116483485-3	chr3	116483392	116483592	+	819.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24683.0	NM_025517	66368.0	Mm.251228	NM_025517	ENSMUSG00000000339	Rtca	2310009A18Rik|AI450277|RPC|Rtcd1	RNA 3'-terminal phosphate cyclase	protein-coding	4.27812830465418	3.89886649817774	4.14666524465356	4.48199556515202	3.94588485696428	4.12194054909407	4.21744987057986	4.27609718594702	-0.237383473559571	0.584467227683949	0.817645298728691
Merged-chr3-142295054-4	chr3	142294951	142295151	+	933.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190852, intron 7 of 15)	intron (NM_001190852, intron 7 of 15)	96799.0	NM_022554	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	4.59227332831704	4.81141290361714	4.36645898091658	4.91994585016645	4.78826197116998	4.68275419141918	4.86476468174392	4.54786098637121	0.043073554876899	0.90645258139665	0.965349101655937
Merged-chr8-26118769-4	chr8	26118645	26118845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357292)	promoter-TSS (NM_001357292)	479.0	NM_207659	320191.0	Mm.334464	NM_207659	ENSMUSG00000037234	Hook3	5830454D03Rik|AI317159|E330005F07Rik	hook microtubule tethering protein 3	protein-coding	6.02738645627106	6.01692280101005	6.19069348867148	5.89242697181175	5.86513852074948	6.16053572601933	5.95385356201035	6.47358133826818	0.156124143685951	0.546582544297811	0.796437980727832
Merged-chr5-105876446-4	chr5	105876361	105876561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018759)	promoter-TSS (NM_018759)	-107.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	7.88131508306872	8.01469707170231	8.09231901343321	7.96453003710019	8.29682597899452	8.18341783991118	8.52841702504484	8.15575984499902	0.398160787203654	0.0170716023507314	0.114906816427679
Merged-chr17-65950753-3	chr17	65950653	65950853	+	962.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023053, intron 1 of 4)	CpG	434.0	NM_023053	65960.0	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	4.3700937247724	4.40943959238154	4.00831683246526	4.15634261731103	4.387683867237	4.07789527150556	3.88447713696137	4.19977445567362	-0.20615656282145	0.629684604018864	0.84234472419062
Merged-chr15-96729245-3	chr15	96729149	96729349	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29521.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	3.54379972279447	3.66591562899118	3.17654536643695	3.35167412412234	3.47492896940865	3.66133904075367	3.41977706609321	3.73971308418874	0.433795725409989	0.403553261731353	0.700922982752502
Merged-chr8-47676834-2	chr8	47676734	47676934	+	885.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1675.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	3.26399762372537	3.23190750533885	3.20990388638683	2.97126777298495	3.1565353153176	2.85329123959937	3.19729950664915	3.15126100541682	-0.264957951683917	0.650872507190807	0.853540185514102
Merged-chr11-88048379-4	chr11	88048275	88048475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001078167, intron 1 of 2)	CpG	1002.0	NM_173374	110809.0	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	5.467253260715	5.5133224570715	5.61046542691124	5.39110833595486	6.02942648556109	5.78610834824768	5.84649294911045	5.872362495945	0.676489321677255	0.00797193762390992	0.0670330239967258
Merged-chr4-132807946-2	chr4	132807846	132808046	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11582.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	3.32568231894835	3.70568090406225	3.39145450655736	3.47948405190329	3.60631063962797	3.68841969621877	3.71216613235362	4.03092556313482	0.867677705216066	0.0810190306150131	0.308801603036102
Merged-chr6-82913528-3	chr6	82913440	82913640	+	998.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011350, exon 14 of 14)	exon (NM_011350, exon 14 of 14)	26229.0	NM_001308374	20355.0	Mm.270543	NM_011350	ENSMUSG00000000627	Sema4f	Sema W	sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	protein-coding	4.9905760340078	4.75792617664861	4.58699916359852	4.82418415645169	4.10613109655757	4.05909326669538	4.25571990441041	4.76832704824735	-1.06371611047221	0.00947611835663528	0.0759468896072973
Merged-chr8-119412807-4	chr8	119412682	119412882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17890.0	NM_019966	56690.0	Mm.423037	NM_019966	ENSMUSG00000074064	Mlycd	AI324784|Mcd	malonyl-CoA decarboxylase	protein-coding	4.98024098919609	4.93150109923534	4.87584966610035	4.9993558167265	4.86580708678342	4.85549593585108	5.02195314646009	4.90862161475133	-0.078601863365629	0.802203118508106	0.923754158062033
Merged-chr15-77875014-4	chr15	77874905	77875105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32830.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	6.2307310583764	6.27884568578049	5.81328276548158	6.19189541618108	6.59727676858718	6.60844063437821	6.60150879913494	6.46175631313692	0.625208260849353	0.00581119873975858	0.0530712716472386
Merged-chr4-55645102-4	chr4	55644992	55645192	+	956.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112617.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.48969209647227	4.95779832109715	5.07934932837266	5.09185915245479	4.60158918364155	4.62471033683039	5.22877199795293	5.3563921084867	0.122610210695444	0.754183631127092	0.903175407237836
Merged-chr7-132788003-3	chr7	132787895	132788095	+	846.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	-1060.0	NM_175268	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	3.25756315264826	3.78967270205627	3.37396331780343	3.65479676770953	3.50375746297827	2.94177175716098	3.12105978486336	3.12936997808177	-1.21132892530563	0.0556613166833034	0.246922270048317
Merged-chr2-156312152-3	chr2	156312068	156312268	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316755)	promoter-TSS (NM_001316755)	-305.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	5.21860655192834	5.19779744209326	5.11926437363275	4.73402792142173	5.6864856693081	5.19000559828208	5.2858550235583	5.77674347975438	0.81777973753029	0.0117022385246898	0.088274018222647
Merged-chr4-56953343-4	chr4	56953235	56953435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5906.0	NM_175518	242474.0	Mm.296632	NM_175518	ENSMUSG00000055296	Tmem245	A630051L19Rik|AI957324|D730040F13Rik	transmembrane protein 245	protein-coding	5.50057190518674	5.81738591137298	6.05510271189396	6.18979026786494	5.29019758949661	4.98082413500981	5.60992232211814	5.608354352966	-0.891836274788335	0.00458743231797322	0.0445529874418087
Merged-chr16-43108021-4	chr16	43107930	43108130	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285805, intron 2 of 10)	intron (NM_001285805, intron 2 of 10)	-139254.0	NM_181058	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	5.17775171382659	4.88262715369415	5.46956875360096	5.59484466863964	5.22264743560497	5.28727178020499	5.15329815017958	5.26951111053962	-0.168217761250296	0.602817733763667	0.827827663828601
Merged-chr10-7833811-4	chr10	7833696	7833896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172785, intron 1 of 5)	intron (NM_172785, intron 1 of 5)	1326.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	6.22239989595523	6.55713309734985	6.33215864889662	6.48966475895308	5.91885343616156	5.95278467775045	5.87372571206637	5.94613837313546	-0.766343423397744	0.000993355481043526	0.0133735671997725
Merged-chr2-118536702-2	chr2	118536670	118536870	+	991.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	7817.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	2.60823181136833	2.66946073086841	2.60856480441087	2.3999055055468	2.53796560981246	2.43746134920966	2.33058140688951	2.60721810203582	-0.466450475895882	0.511346570349318	0.775335536390107
Merged-chr16-8831071-4	chr16	8830978	8831178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081400, intron 1 of 3)	CpG	978.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	7.38732596495721	7.56653521205998	7.61809791660495	7.64083794744677	7.58277713076951	7.20794377360403	7.82304987745671	6.96976940350301	-0.154278377970714	0.493962688313624	0.764691928738673
Merged-chr11-103021495-4	chr11	103021407	103021607	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4360.0	NM_026551	68087.0	Mm.277449	NM_026551	ENSMUSG00000020935	Dcakd	3010024O21Rik|6720485C15Rik|AI849483	dephospho-CoA kinase domain containing	protein-coding	5.12107926219735	5.44693412805065	5.62986273905821	5.79586554242134	5.03504712992929	4.59941180634115	5.19616012525004	5.4249973935156	-0.785149730488256	0.0249968372286236	0.148425395703022
Merged-chr19-56699880-4	chr19	56699783	56699983	+	981.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22489.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	4.6101379042805	4.47492115343676	4.41101566003374	4.55278535118215	4.74519062577771	4.4498302701271	4.39123138822946	4.00684430473313	-0.17567055314172	0.66277431007583	0.860240669860217
Merged-chr7-92551099-3	chr7	92550992	92551192	+	852.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10057.0	NM_025515	66365.0	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	3.14959632774394	3.58283800884715	3.14995890845411	3.27713946351569	3.06516613439964	3.2612644667708	3.42153374687711	3.38171838902916	-0.0683445398335087	0.9031330066423	0.964166361786269
Merged-chr3-103213713-4	chr3	103213614	103213814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	42059.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	6.58655080882479	6.4876548099407	6.82267868151747	6.2316485891192	6.56475200851044	6.69864856728176	7.11442470050227	6.81782457531341	0.396899494512629	0.100223393935954	0.347432581681266
Merged-chr4-145295842-4	chr4	145295772	145295972	+	796.895874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009401, intron 4 of 12)	intron (NM_009401, intron 4 of 12)	19275.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	4.08679731662776	4.14241908240953	3.89205753425326	3.73745302379236	4.02899235805296	4.06625779249741	4.06935420725572	4.03884262140047	0.238836490416239	0.578410975062538	0.814695658189852
Merged-chr11-70490393-4	chr11	70490276	70490476	+	955.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	-14898.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	4.52028584637103	5.11137378625509	4.91519099918952	4.55904938811419	5.00290931176389	4.74390751890157	4.71095695798479	4.87751153575207	0.109036366707069	0.762810464282859	0.907011913026374
Merged-chr2-69898303-9	chr2	69898104	69898304	+	999.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177783, intron 1 of 38)	intron (NM_177783, intron 1 of 38)	958.0	NM_177783	68795.0	Mm.314576	NM_177783	ENSMUSG00000044308	Ubr3	1110059H15Rik|4833421P10Rik|A130030D10Rik|AA409735|AA414972|AA422631|AI646861|AU016126|Zfp650|Znf650	ubiquitin protein ligase E3 component n-recognin 3	protein-coding	4.34838832048119	3.87277718457737	4.46628926714571	4.17019825666333	4.02055436902242	4.25183896343732	4.36881301131756	4.21725823702699	-0.0262537902072339	0.950436696429694	0.982264362614525
Merged-chr13-64432405-4	chr13	64432298	64432498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053180)	promoter-TSS (NM_053180)	-155.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	8.01943381591222	7.60005367194763	7.92169315682699	7.92749679643284	7.65066158728338	7.50321474071894	7.76111967707538	7.38476202947978	-0.380378727224987	0.0415947523324285	0.206528240905596
Merged-chr4-47284253-1	chr4	47284153	47284353	+	576.0	f0_c57.idr	intron (NM_009928, intron 20 of 39)	intron (NM_009928, intron 20 of 39)	-68969.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	3.57609692074837	3.6302918974529	3.39562170816998	3.20600121402615	3.81823255891817	4.04501045812842	3.76796356136842	3.57460569327905	1.12806151740023	0.0237393545806102	0.143345690033168
Merged-chr17-56553164-4	chr17	56553071	56553271	+	808.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130128, intron 2 of 3)	intron (NR_130128, intron 2 of 3)	1216.0	NR_130128	100504425.0	Mm.384143	NR_130128	ENSMUSG00000110218	Gm20219	Tincr	predicted gene, 20219	ncRNA	4.50807080309371	4.51968727050387	4.2393928913106	4.36726151569597	4.49044219849041	4.59788446434257	4.60294772467121	4.50588748850252	0.309973682643301	0.390734536938516	0.690674818832488
Merged-chr17-17525760-1	chr17	17525660	17525860	+	580.0	f1_c57bl6.idr	Intergenic	Intergenic	98729.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	2.83965447157841	2.94175717093142	2.84000810248799	2.58449553888892	3.18461069723214	2.59374804650434	2.76774035035378	2.70970707144414	0.17118440238633	0.803208596025495	0.924024146497742
Merged-chr4-59815611-4	chr4	59815520	59815720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	9970.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	7.13156526794969	6.70169631475258	6.86697171926888	6.8080408184796	6.88724748998025	6.79183540094053	6.69035955598281	6.95291013117191	-0.0602725276710985	0.770892598035341	0.910321191255463
Merged-chr15-50867096-4	chr15	50867008	50867208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	21941.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	7.20912794717568	7.36099593749512	6.93626943337531	7.26493702639037	7.25226948098527	7.53476935638919	7.48819514056922	7.21646886170166	0.226218041386752	0.249436912385146	0.560455506381587
Merged-chr13-95778946-4	chr13	95778872	95779072	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 2 of 35)	intron (NM_027711, intron 2 of 35)	82052.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	5.01292302783356	5.22345867602557	5.22052566706827	5.24896362272088	5.28947880129728	5.45607118841654	5.34367567844438	5.42202510216875	0.338363259170836	0.237422747001847	0.547618720312523
Merged-chr15-8109191-4	chr15	8109073	8109273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133227)	promoter-TSS (NM_133227)	-140.0	NM_133227	170762.0	Mm.295168	NM_133227	ENSMUSG00000022142	Nup155	D930027M19Rik|mKIAA0791	nucleoporin 155	protein-coding	7.68624630010887	7.84438322466326	7.77603220141438	7.96738008619761	7.79916522234081	7.56545054828304	7.91150502797909	7.4743185575277	-0.164082705063147	0.372735930380313	0.676451504400639
Merged-chr13-105300130-4	chr13	105300028	105300228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5643.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	7.10175121991411	7.05417715659359	7.22618142065378	7.56859036304957	6.82782371144113	6.74805984294216	7.24201424543701	7.05002958684159	-0.393199889656103	0.0786324233610281	0.303392089246239
Merged-chr7-97376121-4	chr7	97376008	97376208	+	973.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199035, intron 2 of 12)	intron (NM_199035, intron 2 of 12)	4491.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	5.02460027315673	5.14165173867812	5.09440134230848	5.25049683026401	5.29093998793536	4.88708116989753	5.16578899306602	5.36150854412672	0.101940664795204	0.740917004864307	0.89809586945461
Merged-chr18-37933256-4	chr18	37933179	37933379	+	886.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305981, intron 1 of 28)	intron (NM_001305981, intron 1 of 28)	2197.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	4.89663605754786	4.52255882356404	4.58492709925111	4.64102779395773	4.19391383924445	4.67696912869123	4.44066018341686	4.36822236637327	-0.552679596888298	0.143832232530316	0.422352907560864
Merged-chr2-83644449-4	chr2	83644351	83644551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026934)	promoter-TSS (NM_026934)	-127.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	8.23532030807836	8.28656221112967	8.31678827361842	8.35853569765577	8.30773878234675	8.40830115216252	8.49553668124627	8.34419179502674	0.108934309512903	0.466809089625203	0.746506497201355
Merged-chr8-108697734-2	chr8	108697634	108697834	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16910.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	3.37370683589125	3.20177355573854	3.374165696526	3.06684942891881	3.33883457639882	3.43116295541273	3.61153201857982	3.37230988979707	0.690111594679026	0.1904569394442	0.489706119015234
Merged-chr8-69625410-8	chr8	69625341	69625541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045553)	promoter-TSS (NM_001045553)	107.0	NM_172754	234362.0	Mm.458487	NM_172754	ENSMUSG00000060427	Zfp868	AI449175|AW108241|C530032E20|mszf62	zinc finger protein 868	protein-coding	7.16376797223186	7.39958949905896	7.23116210019606	6.98186703133638	6.89998886053876	7.27210112597243	7.12905742693278	7.19348240466592	-0.0982875950289022	0.628515443755428	0.841555695467787
Merged-chr1-55837583-2	chr1	55837483	55837683	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93658.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	2.86399741851982	2.97737856746542	3.13327523338826	3.52749804149438	3.13099705901526	3.24400612882085	3.12220772336905	3.45259355108939	0.289240451746866	0.648988839630974	0.852504153384524
Merged-chr6-88030620-4	chr6	88030519	88030719	+	979.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	-10824.0	NM_001293654	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	5.48952247912033	4.96252722374957	4.94600402839526	5.33753576736723	5.54320906368635	5.40637189467218	5.03599542854157	5.67905420998711	0.410358224845059	0.210424202250665	0.514930528827314
Merged-chr8-80793977-3	chr8	80793852	80794052	+	775.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021356, intron 2 of 9)	intron (NM_021356, intron 2 of 9)	-54493.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	3.4104307966043	3.42658545635864	3.51619607947376	3.66007888266637	3.4025892175397	3.06398394248257	3.39777700187974	3.29449717823659	-0.746769618435245	0.168446605091744	0.460548798201267
Merged-chr3-14641638-4	chr3	14641547	14641747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024495)	promoter-TSS (NM_024495)	-80.0	NM_024495	71934.0	Mm.158776	NM_024495	ENSMUSG00000027555	Car13	2310075C21Rik|Ca13	carbonic anhydrase 13	protein-coding	8.31949443285223	8.74787555714347	8.35358631296568	8.21525746936105	8.38404920702652	8.60474846137718	8.33055963109145	7.74358024701128	-0.153649956459456	0.483170423694151	0.757657463608698
Merged-chr1-93486732-4	chr1	93486635	93486835	+	873.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159719, intron 1 of 12)	B2_Mm1a|SINE|B2	7674.0	NM_001159719	18000.0	Mm.428652	NM_010891	ENSMUSG00000026276	Sept2	AW208991|Nedd-5|Nedd5|mKIAA0158	septin 2	protein-coding	4.28089908235915	4.18017771364763	4.44525499244971	4.14895798223105	4.51189711959462	4.26940480400698	3.73755393662862	4.36323718009067	-0.00693222475297322	0.987432386243044	0.995274483992449
Merged-chr11-72520074-3	chr11	72519978	72520178	+	655.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029932, intron 8 of 11)	intron (NM_029932, intron 8 of 11)	-30158.0	NM_153060	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	3.11469879307015	3.34230769366104	3.05699999074807	2.82519356359583	2.70138246063424	2.97489203976003	3.1574566991892	2.86414441231182	-0.686307637456862	0.28521259969983	0.596953252281083
Merged-chr16-76373148-4	chr16	76373042	76373242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173440)	promoter-TSS (NM_173440)	-93.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	7.84602886594889	8.20770820463421	8.2914103122059	8.058641664829	8.15906765446574	8.16569386643903	8.26880203032833	8.22978258613969	0.121427630439006	0.469842120323746	0.748648947719156
Merged-chr12-101958862-4	chr12	101958770	101958970	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167914)	promoter-TSS (NM_001167914)	-627.0	NM_001167914	110616.0	Mm.271914	NM_029705	ENSMUSG00000021189	Atxn3	2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3	ataxin 3	protein-coding	5.05853032290806	5.20060380876233	5.58755296320438	5.62020740549005	5.78926114536205	5.65555644566167	5.60873137551308	5.13046395301886	0.299604914246226	0.35115587895733	0.658644512922243
Merged-chr3-65372874-4	chr3	65372777	65372977	+	874.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357358, intron 13 of 13)	intron (NM_001357358, intron 13 of 13)	19676.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	4.14518791995938	3.98087319048035	4.0490330842714	4.37167902642939	4.5353168178313	3.82724646046591	4.17315883060522	4.27578292368232	0.203506259238244	0.648775407037098	0.852432727220627
Merged-chr3-148918605-4	chr3	148918502	148918702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081298, intron 1 of 23)	URR1B|DNA|hAT-Charlie	36033.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	8.29919156872927	8.4303836834154	8.91319427670598	8.85310723908815	8.00402199825984	7.93138378988006	8.14426543747007	7.99186687494066	-0.805186443920088	2.95940589309524e-05	0.000718443219865709
Merged-chr15-6519634-1	chr15	6519534	6519734	+	692.599976	f0_balb.idr	Intergenic	Intergenic	-60213.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	3.69510187354002	3.79718408938831	3.88193948341844	3.65515147992259	3.53806290702101	3.64960330221111	3.52121576384375	3.41386503529942	-0.715673921464376	0.139321140871185	0.415045175664995
Merged-chr1-191072696-3	chr1	191072613	191072813	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 4 of 5)	intron (NM_198654, intron 4 of 5)	9692.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	6.34832317695084	6.47225902116565	6.0622258482038	6.17197999258953	6.74297300038368	6.78834799540933	6.50325652705827	6.20948035968696	0.463781800725942	0.0558156611595432	0.247332562141264
Merged-chr8-47990553-4	chr8	47990432	47990632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133791)	promoter-TSS (NM_133791)	19.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	8.05759907119119	7.89389730101835	8.14007357254396	8.12362845325413	7.87165271794554	7.82837977754054	8.07091131841914	7.9598617289961	-0.159588858921456	0.331728964248299	0.642821952146076
Merged-chr7-29307908-4	chr7	29307801	29308001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013874, intron 1 of 11)	CpG	3896.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	5.97120124044623	5.99355742262062	5.99479386491813	6.26252701889622	6.17405567422273	5.95414120535286	6.32802408109878	6.11783932696268	0.116958566949738	0.63020682485482	0.842667104605937
Merged-chr11-54995360-3	chr11	54995279	54995479	+	886.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 14 of 24)	MIR3|SINE|MIR	-32439.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	3.77583459344008	3.39747872207188	3.45858714074115	3.79638191259704	3.6621350099756	3.68956310512067	3.61282568097834	3.57154295338314	0.0168339296035166	0.972835260114744	0.990224956451649
Merged-chr1-185350055-3	chr1	185349950	185350150	+	987.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347210, intron 7 of 9)	intron (NM_001347210, intron 7 of 9)	-12994.0	NM_029735	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	4.12588397813931	4.52498418845376	4.4113750299739	4.81912259068632	3.31378473913832	3.62359383387339	3.68639987904852	3.42477648799489	-3.0803847777015	2.0503760154507e-08	1.026573096794e-06
Merged-chr15-73176732-4	chr15	73176638	73176838	+	933.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	8209.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	4.67581091540835	4.8903904928278	4.71732031327883	4.95862813221989	5.12298398943092	4.81076458589424	4.97921588100523	4.63152870815928	0.164534200740047	0.631675375399232	0.843533479898352
Merged-chr17-10764511-4	chr17	10764410	10764610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	Lx7|LINE|L1	75681.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	5.95380800728915	5.61333168473551	5.99812996360859	6.28397422013143	5.83174541190874	5.88990276509651	6.04930610790428	5.88285184524259	-0.140644625517063	0.603052708135839	0.827910751102299
Merged-chr14-47506825-4	chr14	47506730	47506930	+	924.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027414, intron 2 of 5)	intron (NR_027414, intron 2 of 5)	34269.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	4.59344826538852	4.31785573272906	4.46069421907007	4.27435775099791	5.24701189373341	5.06632598905242	4.87063030314752	4.78693116116973	1.28802572401291	0.000223104827613253	0.00398303950957705
Merged-chr4-19872999-4	chr4	19872897	19873097	+	993.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49569.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	5.67268580166195	5.87476074711209	6.13323588587596	6.40632995033819	5.46719462757222	5.52597751803723	5.7696395997771	5.37454205029129	-0.864600961348909	0.00324334747522892	0.0339347684755725
Merged-chr16-32164128-4	chr16	32164023	32164223	+	842.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146069, intron 1 of 3)	intron (NM_146069, intron 1 of 3)	1471.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	3.93874251424297	3.64756751179615	3.74129995734649	3.38987053178746	3.94026078651471	3.62580278731011	3.96624942417723	4.02530641388651	0.64829500384419	0.178540862328078	0.474334131070851
Merged-chr13-34726370-1	chr13	34726270	34726470	+	544.0	f0_balb.idr	Intergenic	Intergenic	-13272.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	3.31628313069386	3.49072954218226	3.58961575407742	3.35403054077348	3.45149320812231	3.6559528921542	3.36350277336173	3.18791067370774	-0.0436021051059996	0.93376793403651	0.976129648653029
Merged-chr16-3956635-3	chr16	3956529	3956729	+	767.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081280, intron 7 of 17)	RMER19B|LTR|ERVK	20003.0	NM_175547	268857.0	Mm.215994	NM_175547	ENSMUSG00000049871	Nlrc3	CLR16.2|D230007K08Rik|mFLJ00348	NLR family, CARD domain containing 3	protein-coding	3.61273557334372	3.75470614500689	3.75776408654857	3.84013141486844	3.29988379257167	3.37683217721678	3.25374443789973	3.32741306999751	-1.51647959074619	0.00351257812015228	0.0361669026492577
Merged-chr1-52703318-4	chr1	52703232	52703432	+	799.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357464, intron 2 of 7)	intron (NM_001357464, intron 2 of 7)	23986.0	NM_178081	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	4.47629534016939	4.53274862640433	4.43775318880582	4.8743953860724	3.78303734933231	3.76296631328965	4.29248187519766	4.17025300697803	-1.46187806043548	0.000973588114469909	0.0131497207589855
Merged-chr18-40219413-4	chr18	40219326	40219526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023311)	promoter-TSS (NM_023311)	-27.0	NM_023311	67180.0	Mm.270382	NM_023311	ENSMUSG00000024487	Yipf5	2610311I19Rik|AA408236|Yip1a	Yip1 domain family, member 5	protein-coding	9.07624717480561	9.26106300757433	9.23442194991974	9.25501078654087	9.15878110178935	9.06792416875086	9.49651659967658	9.01269454702123	-0.0139886849750445	0.931655034022863	0.975351667244339
Merged-chr7-19306018-2	chr7	19305918	19306118	+	928.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347586, intron 3 of 4)	intron (NM_001347586, intron 3 of 4)	4027.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	3.30620778294217	3.29067361555951	3.11784024015713	3.17454242375804	3.49636013402536	3.7364009244805	3.29420128983734	3.24500678022124	0.827050162958287	0.12159800942907	0.386243714577393
Merged-chr9-57466311-4	chr9	57466207	57466407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301635, intron 1 of 5)	intron (NM_001301635, intron 1 of 5)	1753.0	NM_001301634	56807.0	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding	5.45718697516012	5.25703612879083	5.56621425932707	5.6136208132917	5.19726548409071	5.42070531696492	5.51213298188341	5.70858406006813	-0.0417416332523401	0.886646667200089	0.957446551626423
Merged-chr9-44232687-4	chr9	44232520	44232720	+	870.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 1 of 15)	MIRb|SINE|MIR	1426.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	3.53410503516273	3.6994229570141	3.64964751455003	3.6534561644859	3.87995164432684	3.6508350470646	3.73990916760281	4.02564441614061	0.585911614885314	0.203124956520634	0.505797840831983
Merged-chr13-93990474-3	chr13	93990383	93990583	+	868.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67313.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	3.4105832447684	3.18737808813987	3.24852689228881	3.32783199732299	3.5797188651765	3.23745779707049	2.98593286392805	3.06120974831337	-0.171876896115829	0.770287617153865	0.910103948964129
Merged-chr5-113015303-6	chr5	113015279	113015479	+	905.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177078, exon 1 of 21)	exon (NM_177078, exon 1 of 21)	159.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	3.47973184037471	3.84231738643977	3.53952125228767	3.37241128025031	3.96314044278515	3.76927083053921	3.78488888753543	3.47841806885479	0.618520725212927	0.216204087293016	0.522695154182106
Merged-chr14-77928183-4	chr14	77928074	77928274	+	910.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 2 of 11)	intron (NM_029495, intron 2 of 11)	23935.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	4.73849283856285	4.84355141492945	4.41655572547166	4.80253779260988	4.49901935637731	4.71950118683481	4.44180103238787	4.45861056192658	-0.415231190221307	0.251817810064003	0.563042010833474
Merged-chr2-173452139-3	chr2	173452111	173452311	+	866.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie5|DNA|hAT-Charlie	-70381.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	2.9488152618758	2.97709462212222	3.07714463726437	3.01928448146385	3.2832188509843	3.30549572336523	3.18116936562175	3.07562228595759	0.823405121558052	0.137096529252839	0.411798702607411
Merged-chr8-84910139-4	chr8	84910041	84910241	+	923.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010062, intron 5 of 5)	intron (NM_010062, intron 5 of 5)	1517.0	NM_010062	13423.0	Mm.350831	NM_010062	ENSMUSG00000003812	Dnase2a	Dnase2	deoxyribonuclease II alpha	protein-coding	4.4092933572919	4.71117467791931	4.79381210641175	5.12068640578659	4.53316376669487	4.68389542473068	5.03387547572701	4.9300736745951	0.0046323833879141	0.990354054062402	0.996162048698599
Merged-chr14-74646330-3	chr14	74646240	74646440	+	943.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172812, intron 2 of 2)	intron (NM_172812, intron 2 of 2)	5466.0	NM_172812	15558.0	Mm.214351	NM_172812	ENSMUSG00000034997	Htr2a	5-HT-2|5-HT-2A|E030013E04|Htr-2|Htr2	5-hydroxytryptamine (serotonin) receptor 2A	protein-coding	4.04536467418193	4.08324829103154	3.9583757580824	4.00451153564348	3.88721085345742	3.36836569056355	3.51975627550873	3.65026715464434	-1.14966711813841	0.0214266508725746	0.134018240989366
Merged-chr8-10706186-4	chr8	10706096	10706296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	176258.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	5.86683997005036	5.70198730478146	5.8678887816611	6.3114213545606	5.19518489372816	4.84445617388682	5.15260346406651	5.55140721319215	-1.30098195265244	4.40034599842728e-05	0.00101199427406157
Merged-chr8-94364145-3	chr8	94364048	94364248	+	920.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 24 of 24)	intron (NM_019415, intron 24 of 24)	-22281.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	4.04356073803428	3.83651553187232	3.95329429960929	3.75645584162277	3.68086595124336	3.75280413612705	3.93611415132225	4.04163941550074	-0.103049258058539	0.819545545511638	0.930923070774984
Merged-chr10-105490892-3	chr10	105490808	105491008	+	980.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177368, intron 1 of 11)	intron (NM_177368, intron 1 of 11)	83571.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	3.78237332514145	3.40056789827634	3.52177078284986	3.88440858815169	3.36428314947333	3.63812830935628	3.85638641899304	3.57645811721285	-0.170888047825526	0.742030468962232	0.898417179766546
Merged-chr14-75121836-3	chr14	75121732	75121932	+	857.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027581, intron 5 of 9)	intron (NM_027581, intron 5 of 9)	9051.0	NM_027581	70859.0	Mm.320289	NM_027581	ENSMUSG00000021997	Lrrc63	4921509B22Rik	leucine rich repeat containing 63	protein-coding	3.79014875136643	3.64395151379492	3.6361692256796	3.92710921522837	3.71938666872055	3.51040458478591	3.86701743364231	3.57839339148598	-0.260866614708653	0.587261047942463	0.819100437669827
Merged-chr10-119040436-4	chr10	119040322	119040522	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152787, intron 3 of 3)	intron (NR_152787, intron 3 of 3)	10077.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	5.04567804252999	4.75651147402755	4.67540077390507	4.81163548748102	5.06178280549478	4.8110566459452	5.42670307962883	4.83370561949787	0.460189062403737	0.180686852732309	0.47704412057244
Merged-chr4-103025552-4	chr4	103025455	103025655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290648, intron 2 of 2)	intron (NM_001290648, intron 2 of 2)	1173.0	NM_011831	23919.0	Mm.100163	NM_011831	ENSMUSG00000066090	Insl5	RIF2	insulin-like 5	protein-coding	6.84824887043074	6.85758322718298	6.23973000509273	6.562535307234	6.39579632052053	6.37673648486619	6.20774914979472	5.94296450646336	-0.593042754990917	0.0187501296914352	0.122610517345582
Merged-chr3-86998782-4	chr3	86998694	86998894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007639, exon 2 of 6)	exon (NM_007639, exon 2 of 6)	546.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	5.71696443999904	5.74580141053584	5.78764864219057	5.43678994711597	5.44087723563398	5.59974636449883	5.36629938707515	5.58856918179853	-0.282278342489989	0.306687938679105	0.619072678442516
Merged-chr6-108185484-4	chr6	108185363	108185563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145937, exon 1 of 9)	exon (NM_145937, exon 1 of 9)	120.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	6.17250269056819	6.16936122422746	6.95990648868226	5.86034621149645	6.1079230235152	6.42839440574929	6.03687705155275	6.18925099032787	-0.230932707698263	0.448131459618191	0.733413535306828
Merged-chr15-79467102-4	chr15	79466998	79467198	+	816.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24955.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	4.29543801890122	4.11766930957726	4.10815461693023	3.99879589422789	4.39497582912436	4.42428237812422	4.58231084984608	4.20296634948147	0.697718517691837	0.0740258448714679	0.293176672443019
Merged-chr6-120152998-4	chr6	120152969	120153169	+	969.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	B1_Mm|SINE|Alu	-40754.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	4.61017171031523	4.74045673550787	4.89731728985292	3.99503293152562	3.95678615883628	4.21629399505876	3.84062111876909	4.32882953876466	-1.20446707036072	0.0103021371229603	0.0806883602855621
Merged-chr12-55388852-3	chr12	55388835	55389035	+	934.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310583, intron 1 of 6)	intron (NM_001310583, intron 1 of 6)	4713.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	3.76323069085634	3.48098971472799	3.71585850548953	3.59948227547373	3.65019179218403	3.67640887141375	3.37176729127031	3.55819250758663	-0.215503315830775	0.659424856007848	0.858272414895088
Merged-chr10-40644900-2	chr10	40644800	40645000	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133568, intron 3 of 4)	intron (NR_133568, intron 3 of 4)	14889.0	NR_133568	70503.0	Mm.252862	NM_027442	ENSMUSG00000063428	Ddo	5330420D20Rik|5730402C02Rik|AI467244	D-aspartate oxidase	protein-coding	2.99368427170068	3.37197922415287	3.19221813877351	2.99935664603186	3.61123428001009	3.47957527025316	3.18082351034696	3.25055308272942	0.92373395195364	0.101289768666929	0.349273541514549
Merged-chr13-6461586-4	chr13	6461481	6461681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86576.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	6.08053309062297	6.24409910130791	6.93346976255509	6.69123690526204	5.59183714440209	5.92158436793781	6.13264952178337	5.67934548702699	-1.06349407394144	0.000270819578502718	0.00466408584036898
Merged-chr2-92455908-4	chr2	92455758	92455958	+	893.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_211358, intron 1 of 1)	intron (NM_211358, intron 1 of 1)	3936.0	NM_211358	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	4.31300162249452	4.09467988280298	4.09286160434437	4.39933669437188	4.18752267038187	3.94708460185046	4.21106670909034	4.04138332709569	-0.346761102118137	0.402777514099204	0.700241821993728
Merged-chr19-5529546-4	chr19	5529452	5529652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19035.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	5.90546335146433	5.78124639098484	5.46966617095264	5.66853700820301	5.84538310162481	5.79046147650639	5.73960138327143	5.90229042357603	0.178979143135045	0.485852902142663	0.759645215980007
Merged-chr15-98683364-4	chr15	98683272	98683472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5911.0	NM_172612	223881.0	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	5.46053750518109	6.14727039251768	5.5206727514632	5.06613913714512	5.96327478195001	5.93244625436162	5.43410262871618	5.88979943056315	0.361138272215177	0.287948097733652	0.599908024252411
Merged-chr1-177703079-4	chr1	177703014	177703214	+	881.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26700.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	4.03992611554001	4.26682612616835	4.26984348669653	4.10591835945959	4.35041547719032	4.16402531377755	4.11937520767276	3.933856728872	-0.0278364442828625	0.946214092225575	0.980814540550536
Merged-chr15-8992362-4	chr15	8992260	8992460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198024, intron 1 of 13)	MIRb|SINE|MIR	24411.0	NM_198024	223332.0	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	7.38118013731147	7.02253421436384	7.28901670789145	7.55972755717125	7.47360200564492	7.54953559603788	7.67660711843374	7.34696160165565	0.238655244538027	0.233393263657428	0.543040635259939
Merged-chr8-33931773-4	chr8	33931671	33931871	+	803.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1908.0	NM_001042675	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	3.43938363033964	3.62706916797425	3.77600681839801	3.36746682439225	3.89971262778396	3.94574309997142	3.7598154185982	3.67113550364531	0.841518628852341	0.0777398852287844	0.301541767644794
Merged-chr2-166694741-4	chr2	166694631	166694831	+	947.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	ORR1B1|LTR|ERVL-MaLR	19101.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.07021499935358	4.57978469610689	4.40589154563369	4.20884285028161	4.5321543001595	4.5778104994435	4.61420116218165	4.01300075082514	0.302648749968559	0.465398986623364	0.745843396799829
Merged-chr10-96633013-3	chr10	96632950	96633150	+	891.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16049.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	3.71697153808725	3.81870812594688	3.34656491662254	3.24960434668299	3.61483790745051	3.58032666105994	3.13970990990565	3.28225069732265	-0.425156188918522	0.458628144104146	0.74144172337427
Merged-chr12-110601997-4	chr12	110601866	110602066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030238, intron 1 of 76)	CpG	571.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	4.96051513798992	5.15047384300326	5.37526192091805	5.23863807307095	5.0254479053047	4.85102930448073	5.45153425720708	5.31603625335322	-0.0226045613395642	0.944178898200966	0.979954897588816
Merged-chr7-141369081-4	chr7	141368973	141369173	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3963.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	5.24271046686693	4.71452724738451	5.27063279368269	5.13265372110118	4.61517101840915	4.79987110151217	4.91148275542086	4.57237532947712	-0.762563661991771	0.0284779149227196	0.161903315198423
Merged-chr11-118107217-4	chr11	118107137	118107337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 18 of 80)	intron (NM_001167746, intron 18 of 80)	21982.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	5.8064947692419	5.79955476002307	6.18174818801477	5.78052806574529	6.05522997103382	5.83024804006722	5.51126509091815	5.89665863401632	-0.0758746547131654	0.779937156404957	0.914266087044516
Merged-chr1-93507170-3	chr1	93507049	93507249	+	883.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159719, intron 12 of 12)	intron (NM_001159719, intron 12 of 12)	-4955.0	NM_145519	227377.0	Mm.243091	NM_145519	ENSMUSG00000034066	Farp2	AI465173|BC009153|D030026M03Rik|Fir|mKIAA0793	FERM, RhoGEF and pleckstrin domain protein 2	protein-coding	3.51427793713149	3.43111233793826	3.51476446925108	3.7771838459726	3.47710411084018	3.57526040298487	3.14263432576492	3.28250689735325	-0.65616974292517	0.22372485539387	0.531827521693895
Merged-chr14-72691536-3	chr14	72691444	72691644	+	776.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 1 of 25)	MLT1A|LTR|ERVL-MaLR	18459.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	4.1503420602666	4.12670422312204	4.06101394170759	4.21442130418757	4.11568363790195	3.86524788348189	4.08877024462303	3.68346387034202	-0.49288216694302	0.258564993383947	0.570449048881877
Merged-chr2-27680344-2	chr2	27680244	27680444	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	3143.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	3.18590136094738	3.19480816318114	3.41614610336356	3.49950091995515	3.23685810772268	3.41800781975416	3.45324793618833	3.24592369431592	-0.00984374134902111	0.985433937347721	0.994679311230532
Merged-chr7-114168512-4	chr7	114168396	114168596	+	909.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER3|DNA|hAT-Charlie	-50715.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	3.99390912115957	3.94993858718537	4.0544482944542	3.9663943004659	5.40411023590983	4.54973211954408	4.90446181197572	4.8958060202321	2.22936292998876	2.6827758602587e-08	1.30703150552604e-06
Merged-chr12-36119470-4	chr12	36119336	36119536	+	837.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025840, intron 5 of 11)	intron (NM_025840, intron 5 of 11)	29057.0	NR_003649	432649.0	Mm.347860	NM_001014396	ENSMUSG00000059301	Gm5434	EG432649	ubiquitin-conjugating enzyme E2F (putative) pseudogene	pseudo	3.99718943001266	3.85081656629699	4.05128897765156	4.38415114193787	4.62068911386002	4.22844304694763	4.39458085609508	4.52563095144261	0.834316996972268	0.052907143265562	0.239956515260573
Merged-chr17-35381024-3	chr17	35380924	35381124	+	849.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001143689, intron 3 of 5)	intron (NM_001143689, intron 3 of 5)	1407.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	3.74686178099002	3.81564501242901	3.4909088154245	3.04221266135058	3.53397322731804	3.60909033640669	3.16291172344255	3.64865834530643	-0.178087687167269	0.761149755071002	0.906512173824769
Merged-chr12-91769621-4	chr12	91769534	91769734	+	901.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	16802.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	4.19404299912707	4.1836941302069	3.99341248412361	4.14330086858555	4.51339435534063	4.3207273919446	4.26549731684157	4.36593180410938	0.59473828273715	0.124296501481748	0.391259263361566
Merged-chr9-105122963-4	chr9	105122867	105123067	+	979.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8838.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	5.27202320213536	4.91002023309473	4.62215110750791	4.67962999473997	5.71296963605267	5.58833155439936	5.60756834515298	5.14278907946597	1.19721605117547	0.000312571669668877	0.00523988197723999
Merged-chr18-4255742-3	chr18	4255638	4255838	+	756.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89906.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	3.70961728041341	3.67232927476498	3.61458965619452	3.17822433583016	3.31909418274603	3.45374507659693	3.44259508921342	3.27434680276855	-0.609565175364867	0.263745169179189	0.575838800057245
Merged-chr5-112281931-4	chr5	112281788	112281988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	MER44B|DNA|TcMar-Tigger	5197.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	5.76894123551058	5.61743507513854	5.96019416108805	6.22118599238327	4.89338593248449	5.38523863466528	5.06858419297392	5.39771983213515	-1.27086650488376	4.40220523815444e-05	0.00101209485350967
Merged-chr4-124805205-4	chr4	124805092	124805292	+	866.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008636, intron 2 of 10)	intron (NM_008636, intron 2 of 10)	2643.0	NM_008636	17764.0	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	4.19344189905734	4.50055235010208	3.84219818926325	3.73822645532205	4.433047588349	3.84343998278748	4.21792266663155	4.05226331436378	0.154099944919926	0.749352698429079	0.901271957579011
Merged-chr7-30698310-3	chr7	30698204	30698404	+	949.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026961)	promoter-TSS (NM_026961)	-622.0	NM_026961	69147.0	Mm.307035	NM_026961	ENSMUSG00000013083	2200002J24Rik	-	RIKEN cDNA 2200002J24 gene	protein-coding	4.41176925184226	4.46990262119477	4.06097073656787	4.30177980114014	3.89384926639113	4.28425714596779	3.94017333309728	4.15577757601275	-0.64023302067398	0.127937768968275	0.398030688298095
Merged-chr8-80879881-4	chr8	80879781	80879981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001301298, exon 1 of 11)	5' UTR (NM_001301298, exon 1 of 11)	598.0	NM_021356	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	5.57461347879917	5.40659059464055	5.26073349403378	5.66003934090594	5.48725267429813	5.26599229264877	5.32814724804086	5.4661120278248	-0.179513314370362	0.530402278010922	0.786525451847713
Merged-chr1-75209265-7	chr1	75209170	75209370	+	937.392883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029010, intron 2 of 16)	intron (NM_029010, intron 2 of 16)	1508.0	NM_029010	74577.0	Mm.458319	NM_029010	ENSMUSG00000026200	Glb1l	4833408P15Rik	galactosidase, beta 1-like	protein-coding	3.71537671109094	4.2733837428472	4.05740240843004	3.55792830433632	3.64950262932401	3.58980203391055	3.90476528333409	3.87112046410151	-0.479744813592156	0.341927151656821	0.650906173351365
Merged-chr17-27501825-3	chr17	27501724	27501924	+	944.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013385, intron 1 of 8)	intron (NM_001013385, intron 1 of 8)	1709.0	NM_001013385	268934.0	Mm.358940	NM_001013385	ENSMUSG00000063239	Grm4	Gprc1d|mGluR4	glutamate receptor, metabotropic 4	protein-coding	3.82583419633669	3.66926886931706	3.9965564780309	3.60700981083707	3.74110692900942	3.30480829886913	3.38539915445643	3.45723531032063	-0.895704989588253	0.0901219220496567	0.327789265702753
Merged-chr6-122810336-4	chr6	122810231	122810431	+	912.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-9853.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	4.15837932634094	4.03370856338265	3.84268470002749	4.13654346022218	4.33233899527669	4.46196747342814	4.2303476107354	4.33107871686828	0.703101480780643	0.0794494578051547	0.305171494097086
Merged-chr7-16098506-4	chr7	16098383	16098583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025898)	promoter-TSS (NM_025898)	-97.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	8.99477896187242	8.99904786124908	9.08473573666411	8.90457554279066	8.93651096493446	9.03997913488278	9.0446008501348	8.79612997968977	-0.0459000964604875	0.751930005784565	0.902329068825205
Merged-chr8-60887112-4	chr8	60887063	60887263	+	855.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3230.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	4.19760497239956	3.94478037639541	3.91689060661885	3.99742681512438	4.0742665887747	3.98445526602982	4.17917549015418	4.06283724232181	0.164734661775251	0.690673879607467	0.874049428217715
Merged-chr15-39217413-3	chr15	39217338	39217538	+	861.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256383, intron 1 of 25)	LTR41B|LTR|ERVL	19152.0	NM_053271	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	2.84335297578385	3.11136629808798	2.77516771338365	3.10786783935618	2.87982911642798	3.01575142679203	3.07435416715537	2.96932112941664	0.0266503211002233	0.965192189128623	0.987705455701398
Merged-chr4-129795542-4	chr4	129795435	129795635	+	916.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24944.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	4.35615558670754	3.96915963543206	4.35683944550561	4.40670386062356	4.41052215840865	4.39710885646842	4.11047407679551	4.354073666083	0.0884314030949442	0.825833189082362	0.933176074888032
Merged-chr1-151344429-4	chr1	151344310	151344510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359262)	promoter-TSS (NM_001359262)	-76.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	7.76807056533616	7.72687053562741	7.38869198004126	7.74841297741672	7.93578422230099	7.9070379896951	7.74710283950388	7.83986479553364	0.246122482825623	0.160379142119734	0.448568782936089
Merged-chr3-136708461-4	chr3	136708369	136708569	+	930.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	38403.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	4.61090155743246	4.59267446538542	4.69247121260225	4.52008985374	4.96612006458871	4.61204746174516	4.9479679974397	4.90477442518054	0.577129626608292	0.0860543609898586	0.319623427306259
Merged-chr1-144003472-4	chr1	144003329	144003529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009061, intron 1 of 4)	intron (NM_009061, intron 1 of 4)	720.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	5.19192176337268	5.01439838775983	5.022026394012	5.28977079649986	5.29338860891586	4.87561834359083	5.4750836362712	5.59509454141629	0.354205785177257	0.271431848119738	0.583222139604812
Merged-chr5-143475564-5	chr5	143475383	143475583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 4 of 14)	intron (NM_144915, intron 4 of 14)	10990.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	6.46867212295298	6.56545400973703	6.81637310806409	6.33473352643155	6.26215464610073	6.23919324904447	6.11792319152563	6.44844211075329	-0.407635160560371	0.0821489070463998	0.311174341687813
Merged-chr3-104817936-6	chr3	104817854	104818054	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008619, exon 1 of 20)	exon (NM_008619, exon 1 of 20)	351.0	NM_008619	17454.0	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	4.32793011565912	4.29681647385276	4.28436391992018	4.22253098643491	4.23005597580652	4.16209330772495	4.39239189173687	4.63261758918328	0.205207853135825	0.597861309971725	0.825624627640561
Merged-chr11-75533133-4	chr11	75533037	75533237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	1025.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	6.17702305352579	5.99365145739802	6.17811416840936	6.33825813474645	6.10451350353397	6.2721381605093	6.25964153536925	6.25059273071694	0.0439940977125827	0.849416281383771	0.943120119372541
Merged-chr2-128819180-4	chr2	128819055	128819255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355629, intron 1 of 18)	intron (NM_001355629, intron 1 of 18)	852.0	NM_001355629	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	5.68876313657254	5.51471167087823	5.78691264308758	6.03355433568951	5.52216811015469	5.5226897880781	5.78049208749114	5.68573567869617	-0.262168641478717	0.345167992988047	0.653475345716313
Merged-chr2-27769349-3	chr2	27769239	27769439	+	781.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58756.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	3.81265165182496	4.70282995872805	3.86532189309037	3.33256698245064	3.49748570449249	3.82687231371183	3.50482768132637	3.96117134876949	-0.880423291133316	0.134510255548906	0.408198277161632
Merged-chr2-91098310-4	chr2	91098203	91098403	+	897.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011355, intron 1 of 4)	intron (NM_011355, intron 1 of 4)	1625.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	4.49125240544075	4.43995225962206	4.53187555164311	4.29957111454346	4.22940789320586	4.39912450702785	4.72303751047686	4.48907660601647	0.0760930936733568	0.841714858597587	0.939920647612526
Merged-chr7-134693356-4	chr7	134693246	134693446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033420, intron 1 of 51)	MTD|LTR|ERVL-MaLR	22659.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	5.78410502809122	5.5961463013932	5.71426358771088	5.66857260124095	5.52702775270786	5.35932511423845	5.61071595683692	5.80374322842825	-0.175815197778492	0.510534305045702	0.774867939359323
Merged-chr11-51856483-9	chr11	51856434	51856634	+	989.858032	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 1 of 12)	CpG	947.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	4.75997898577954	4.55097531857321	5.19537388623969	4.50440780333147	4.63083207012271	4.603255385902	4.62273023536726	4.86413010471976	-0.178348126827509	0.636702648688455	0.846419846310359
Merged-chr7-99139416-3	chr7	99139318	99139518	+	858.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	1726.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	3.46124788750099	3.18769901689554	3.18976047183742	3.17379467754054	3.38765416599019	3.10274191226134	3.23693344628738	3.30382250860575	0.0552419054473118	0.919214390115296	0.970285021467879
Merged-chr7-30873287-4	chr7	30873195	30873395	+	867.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009845, exon 5 of 14)	exon (NM_009845, exon 5 of 14)	5733.0	NM_009845	12483.0	Mm.260994	NM_009845	ENSMUSG00000030577	Cd22	A530093D23|Lyb-8|Lyb8	CD22 antigen	protein-coding	4.13080900928991	3.752641732823	3.55629627167745	4.11663231955787	4.05856757472638	3.8590311883943	4.02637470289201	4.04171037634048	0.21215607380274	0.649655950787772	0.85282470069571
Merged-chr13-23453564-4	chr13	23453456	23453656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12345.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	5.25900014962176	5.26055238416332	5.05285434240348	5.33324576518609	5.54496443529616	5.40367334778604	5.20195123438068	5.83342577844191	0.493505174889983	0.101648900099705	0.349885064507838
Merged-chr2-22724330-4	chr2	22724234	22724434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-49993.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	6.68631014228845	6.77956317954068	7.2654327689752	6.67678003544222	6.51311080533053	6.71934251622875	6.75575678419806	6.86731879727638	-0.215913367973446	0.352397673220617	0.659568292805988
Merged-chr16-17508876-4	chr16	17508777	17508977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331226)	promoter-TSS (NM_001331226)	194.0	NM_025808	66863.0	Mm.161726	NM_025808	ENSMUSG00000022761	Lztr1	1200003E21Rik|AI591627|AW550890	leucine-zipper-like transcriptional regulator, 1	protein-coding	6.60698800629166	6.67620322603905	6.33080892280509	6.50873055597074	6.38292470926823	6.94379939160912	6.76104555482059	6.43746692958542	0.152791856760485	0.514278683155148	0.776963161444587
Merged-chr18-9486131-4	chr18	9486061	9486261	+	982.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36007.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	5.67237562226093	4.97020796032409	5.26947415367521	5.58436997100847	5.14661916946993	4.90311638701511	4.94460784369549	5.0021077475914	-0.742783993762792	0.0253382498349637	0.149908976160667
Merged-chr18-53244021-6	chr18	53244030	53244230	+	884.690735	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1532.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	4.47677560594087	4.32672293690434	4.47748058178131	4.5097383511576	4.43690294061731	4.60814183534914	4.3262276710595	4.80418543326004	0.223191834342984	0.54779353240025	0.797027776266171
Merged-chr13-36529055-3	chr13	36528955	36529155	+	772.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 5 of 5)	ORR1F|LTR|ERVL-MaLR	205422.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	3.12290418241644	3.40302863971534	2.84245395318513	3.44222303886822	3.30040170529828	3.35590951721081	3.17401043496015	3.35306150311513	0.230858149669854	0.703751208326364	0.88085227645534
Merged-chr8-70539468-4	chr8	70539361	70539561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007924)	promoter-TSS (NM_007924)	-214.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	8.74440012907949	8.76879107129146	8.73314361692732	8.62744958019039	8.72019469006121	9.03597716857051	8.73505085335115	8.72337321600292	0.1139603986005	0.45796450956229	0.740952307726833
Merged-chr5-41768548-4	chr5	41768405	41768605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4285.0	NM_007524	12020.0	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	4.79656206485825	4.80919263003618	4.90617298606655	5.00739832228599	4.81133498509712	5.14463838439748	4.84760807667348	4.49806787501699	-0.0996900268243005	0.772634322027967	0.910986407057077
Merged-chr7-116462523-4	chr7	116462369	116462569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER76|LTR|ERVL	-19011.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	5.35963163215494	5.20568821661441	5.33365698209943	5.19215393754806	4.82172836373702	5.05728730685157	4.6932351451423	5.02358754509036	-0.707775323094213	0.0240837771152882	0.144834333498572
Merged-chr5-72182944-4	chr5	72182834	72183034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14745.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	5.68835527314768	5.9631368880818	5.7158597051921	6.3476928083129	5.54741737183589	5.81244879822457	6.15945145745853	5.81258236819655	-0.21201254144436	0.477494039633587	0.753671018429109
Merged-chr4-146480753-2	chr4	146480653	146480853	+	880.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21247.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	3.16409365655612	3.03945025172525	3.04753435744022	2.42574152946206	3.05940943333853	3.03258435808775	2.69424072150662	3.46039807994425	0.511701239924314	0.483923346726965	0.758153322401748
Merged-chr16-11843661-4	chr16	11843547	11843747	+	968.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146067, intron 2 of 3)	intron (NM_146067, intron 2 of 3)	-57717.0	NR_033509	791359.0	Mm.227592	NR_033509	ENSMUSG00000055015	Gm9961	-	predicted gene 9961	ncRNA	4.78860918776583	4.69109488240063	5.18312372927279	4.85897562253429	5.01485793918976	4.96986593098552	5.79018933409203	5.26865457728497	0.777287669355145	0.0300537774208569	0.16744850430813
Merged-chr11-80080491-2	chr11	80080391	80080591	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018776, intron 1 of 7)	intron (NM_018776, intron 1 of 7)	500.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	3.57563554493912	3.58631338502603	3.45822163291229	3.16309001777229	3.76981229193042	3.69521981561349	3.71910778471224	4.04113145085937	1.17034443238306	0.0187342644698765	0.122551806883681
Merged-chr10-19008027-4	chr10	19007943	19008143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166402, intron 2 of 7)	intron (NM_001166402, intron 2 of 7)	3920.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	5.83750100939898	6.47409477328899	5.9402011930869	6.10979943771496	6.68654874019751	6.4755780196823	6.32140263255559	6.31368718683375	0.518015275595561	0.0420181448491321	0.207711669786639
Merged-chr11-4083573-3	chr11	4083482	4083682	+	921.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11849.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	3.84755266484832	3.86923489484374	3.79661182626133	3.85141641931733	4.17315702155878	3.91609424977888	3.83227259717626	3.62688481872332	0.201795090174077	0.65807061114791	0.857677183558236
Merged-chr1-67061669-4	chr1	67061560	67061760	+	911.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22788.0	NM_021295	14768.0	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	4.66275824266581	4.65285434020799	4.50136198522524	4.63348780070543	4.33428917325743	4.83481607358255	4.6033060336785	4.66044847588455	-0.0168876639902965	0.962681829046915	0.986696809953945
Merged-chr10-7727293-3	chr10	7727207	7727407	+	870.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011835, intron 1 of 10)	PB1D10|SINE|Alu	1307.0	NM_011835	23924.0	Mm.28127	NM_011835	ENSMUSG00000019794	Katna1	-	katanin p60 (ATPase-containing) subunit A1	protein-coding	3.44318323841849	3.32108423843575	3.44364433902869	3.44783717815744	3.4613311411187	3.24366097452988	3.43030893823297	3.73608481218147	0.218981816072125	0.670349798707127	0.864018744048012
Merged-chr11-96411024-4	chr11	96410914	96411114	+	983.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45256.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	4.71135762425394	4.7734157968377	5.3117076018747	4.82429668061674	4.78690784135036	4.62593268695265	4.69022263785369	4.9967270303848	-0.278169760315368	0.43525639604409	0.724494615589096
Merged-chr12-117466139-4	chr12	117466036	117466236	+	891.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50343.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	4.41402994691383	4.19239294568301	4.3673832742944	5.23681625217027	4.86359466787939	4.59201981238696	4.68260531290701	4.58554543917332	0.0847237852004794	0.850187444896907	0.943475969197813
Merged-chr5-96161653-6	chr5	96161554	96161754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285511)	promoter-TSS (NM_001285511)	101.0	NM_178854	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	5.06286057641857	4.61774987499155	4.9009529367862	4.76682358924318	5.00563546163149	4.76503892231364	4.69227443637269	4.93189658383845	0.0496131791403968	0.883721917112958	0.956342055191766
Merged-chr4-49626740-4	chr4	49626607	49626807	+	874.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	-5353.0	NM_001163263	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	3.700275764327	3.6163902952765	3.94930629600212	4.07465830684818	3.83001780674162	3.92561025528396	3.73947742939031	3.584462507726	-0.243584198947916	0.610351226809433	0.831595076242652
Merged-chr3-116184594-4	chr3	116184505	116184705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54917.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	5.70503801856058	5.99403062929375	6.03349281139899	5.86581877635126	6.04995572385687	6.00850448100008	5.70352803268823	6.00842686597978	0.0790405619434128	0.752171547118382	0.902363969099289
Merged-chr17-48119878-2	chr17	48119778	48119978	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26429.0	NM_001177897	328829.0	Mm.466999	NM_177824	ENSMUSG00000073386	9830107B12Rik	Trem5	RIKEN cDNA 9830107B12 gene	protein-coding	3.67597822169421	3.38875274981397	3.39901906146298	3.1350853628221	3.71554004343743	3.74515041619419	3.885922053601	3.39729253283969	0.961789466696107	0.0656016701250367	0.272717046947202
Merged-chr5-34285519-3	chr5	34285407	34285607	+	890.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 1 of 12)	intron (NM_001015039, intron 1 of 12)	2817.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	3.50819953040716	3.91184876191763	4.03990546548841	4.0319527303394	4.09860301195931	3.68910279336721	3.83681851113935	3.85044107297364	-0.0325853250919008	0.945793279360249	0.980637693555381
Merged-chr19-29828759-4	chr19	29828661	29828861	+	917.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-15787.0	NM_177721	240614.0	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	4.26414761344857	4.13492426241661	4.06393422756231	4.4547220718141	4.52367472573215	4.52650554772867	4.33516587830261	4.5885216624844	0.561133336565393	0.153067145172015	0.437555330104179
Merged-chr14-36864254-4	chr14	36864137	36864337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55298.0	NM_001347503	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	6.90538794352669	7.08005454714587	7.00662490158348	7.27948842958309	6.6891624530301	6.58044767088047	6.56622404433496	6.72001137308836	-0.630361920209495	0.00207111954051583	0.0240254592200743
Merged-chr7-30878153-4	chr7	30878071	30878271	+	987.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001043317, intron 3 of 15)	PB1D7|SINE|Alu	857.0	NM_009845	12483.0	Mm.260994	NM_009845	ENSMUSG00000030577	Cd22	A530093D23|Lyb-8|Lyb8	CD22 antigen	protein-coding	5.25374990587246	4.89773470627183	4.75083911744658	5.10852024252713	5.49200577420188	5.27097125191988	5.19865333307421	5.28036923672581	0.555371619053765	0.0753028375312449	0.296311607752584
Merged-chr3-89087635-4	chr3	89087564	89087764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028188, intron 9 of 10)	intron (NM_028188, intron 9 of 10)	2367.0	NM_001083808	72296.0	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	5.2518450615008	5.28410740006731	5.48987641702612	5.59642726696202	5.38808566610015	5.42892338597066	5.12621649262839	5.75249550564627	0.0283419009016678	0.925464103694645	0.972503515835845
Merged-chr16-56647020-4	chr16	56646919	56647119	+	851.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014399, intron 12 of 27)	intron (NM_001014399, intron 12 of 27)	70431.0	NM_001357124	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	4.63207764558412	4.70014826535406	4.34332786095444	4.93675419463902	4.61256542107608	4.09624585523772	4.32439798238462	4.29352616548123	-0.736230463090338	0.0712727684859419	0.286439184013374
Merged-chr13-115089429-1	chr13	115089329	115089529	+	629.0	f0_balb.idr	exon (NM_134058, exon 1 of 2)	exon (NM_134058, exon 1 of 2)	729.0	NM_134058	105083.0	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota mRNA surveillance and ribosome rescue factor	protein-coding	3.94367117534344	3.65612806924259	4.02913501989336	3.6363770522738	3.70500664285892	3.52210753046765	3.63465585987685	3.70099259531821	-0.518594945383665	0.283109617077694	0.595263611222688
Merged-chr19-29364268-4	chr19	29364166	29364366	+	807.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2395.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	3.43086243393758	3.91294983802527	3.62777704301764	3.58539211377981	4.50298130819806	4.02643815402951	3.98064060191148	3.90056850269705	1.34204537843645	0.00532641309087901	0.0498067206247605
Merged-chr15-76294807-4	chr15	76294687	76294887	+	908.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001195537, exon 1 of 7)	exon (NM_001195537, exon 1 of 7)	353.0	NM_001195537	100503915.0	Mm.393455	NM_001195537	ENSMUSG00000071724	Smpd5	Gm10345|MA-nSMase	sphingomyelin phosphodiesterase 5	protein-coding	4.47356684761886	4.3595732453048	4.89833131588723	4.82447323789578	4.29715778016019	4.37341555214569	4.45384810318633	4.24260907041876	-0.739542274843889	0.0571138160751219	0.25044999472715
Merged-chr16-36675528-4	chr16	36675417	36675617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9440.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	5.23682975114485	5.49122978945223	5.01450634999283	5.77018464208274	5.68132155105343	5.66089621236547	5.66468078053677	5.71328495174116	0.412213742516927	0.182096342701722	0.478767986184875
Merged-chr8-95633475-4	chr8	95633384	95633584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030198)	promoter-TSS (NM_030198)	-75.0	NM_030198	78833.0	Mm.35546	NM_030198	ENSMUSG00000031669	Gins3	2700085M18Rik|AI616142	GINS complex subunit 3 (Psf3 homolog)	protein-coding	6.21421368023995	6.38909764901209	6.52541198640125	6.48917888318371	6.58102677584165	6.56513280928263	6.62910490482226	6.4022104283415	0.193534648121073	0.36826290521411	0.672721296810859
Merged-chr9-57523902-4	chr9	57523762	57523962	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007747, intron 1 of 4)	intron (NM_007747, intron 1 of 4)	2630.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	5.08594142428396	5.20648879407484	5.15240272775156	4.90112010709743	5.48267716786511	5.19285737759101	4.95781222012834	5.11652649603673	0.253041990880143	0.426258699201766	0.717714622474393
Merged-chr3-89419112-4	chr3	89419076	89419276	+	811.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016904)	promoter-TSS (NM_016904)	625.0	NM_011368	20416.0	Mm.86595	NM_011368	ENSMUSG00000042626	Shc1	Shc|ShcA|p66|p66shc	src homology 2 domain-containing transforming protein C1	protein-coding	3.81904364843305	3.76154928482128	3.81958535467593	3.86441029773984	3.960805686401	3.88691251308223	3.7531866897719	3.71268233854965	0.052187874857617	0.906411084167781	0.965342382154129
Merged-chr8-64847414-3	chr8	64847316	64847516	+	791.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178633, intron 1 of 14)	intron (NM_178633, intron 1 of 14)	2508.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	2.86167146720756	3.13266997149241	3.40830601983414	3.463343541156	2.91448461042395	3.41917997676082	3.12183727574723	3.13143605075029	-0.328741115606492	0.600268879424875	0.826760171717672
Merged-chr4-11006856-4	chr4	11006704	11006904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175175, intron 1 of 1)	intron (NM_175175, intron 1 of 1)	815.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	5.31429777962205	4.95471110603568	5.71847082056257	5.58909611775493	5.27728797470163	4.9516401658174	5.02766794548107	5.42506192941722	-0.43631568991122	0.194240474031077	0.494645726487711
Merged-chr11-29704765-2	chr11	29704665	29704865	+	789.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_194051, intron 1 of 8)	MLT1A|LTR|ERVL-MaLR	10991.0	NM_194051	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	2.48713666343993	2.55630806116037	2.48733479431152	2.84142071864389	2.74729381195128	2.80090185507604	2.807010237973	2.92771062719692	0.972813870090711	0.167053579920478	0.458516437171159
Merged-chr9-44468156-2	chr9	44468056	44468256	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13389.0	NM_009476	22269.0	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	3.43960950560883	3.60368579480881	3.54375458318324	3.05861105606069	3.28632578664681	3.50060479340422	3.12803221915383	3.32560845052169	-0.373690700575958	0.509555939708204	0.774103166414348
Merged-chr3-109267164-4	chr3	109267074	109267274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73509.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	7.11238914188895	6.66839840231617	6.67048375045443	6.60131011730774	6.09041811987923	6.2986944620777	6.06583430470562	6.09269987384176	-0.938308204729762	7.32645845061921e-05	0.00156041288466973
Merged-chr4_GL456216_random-16498-1	chr4_GL456216_random	16398	16598	+	1000.0	f0_c57.idr	intron (NM_001033326, intron 1 of 6)	CpG	617.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	3.99718138256862	3.81800893592636	3.9978321302557	2.45163406742623	6.78553739492247	7.10244872991092	7.0341185585666	6.98430661423088	10.6004178168772	4.64583482241432e-31	6.23935616650243e-28
Merged-chr10-94578157-4	chr10	94578030	94578230	+	979.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177026, intron 1 of 3)	intron (NM_177026, intron 1 of 3)	1867.0	NM_177026	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	6.59162842940652	6.45265492300209	6.5928035944008	6.45336958187121	5.67049326623584	6.12486470101923	5.60082729596758	5.28672758406996	-1.27834811298588	1.97334702789386e-06	6.4676274449828e-05
Merged-chr16-91596541-4	chr16	91596400	91596600	+	852.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030018, intron 1 of 6)	intron (NM_030018, intron 1 of 6)	1180.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	3.80837100287704	3.70618594291869	3.64389492783181	3.35849901314988	3.90811651023941	3.76416383129289	4.22199182864207	4.04188874645153	1.07802086265588	0.0221758319700354	0.137232963292919
Merged-chr6-115362203-3	chr6	115362097	115362297	+	866.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308354)	promoter-TSS (NM_001308354)	-152.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	3.73531390690836	3.44811410121672	3.83447950303062	3.68852816278582	3.40820596594837	3.74754744836676	3.86370567796013	3.87863587690202	0.149823710335347	0.760823050548389	0.906387085349031
Merged-chr11-82890606-4	chr11	82890447	82890647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102717)	promoter-TSS (NR_102717)	77.0	NR_102719	19364.0	Mm.9286	NM_011235	ENSMUSG00000018841	Rad51d	R51H3|Rad51l3|TRAD|Trad-d5	RAD51 paralog D	protein-coding	5.4843582251431	5.77647056932726	6.08373477091241	5.433530206933	5.46849018111901	5.71904027575034	5.56973477609254	5.74610075418561	-0.139561870517531	0.634018905483334	0.844935157053758
Merged-chr17-15813910-4	chr17	15813822	15814022	+	796.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178615, intron 2 of 2)	intron (NM_178615, intron 2 of 2)	12664.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	4.17983550765796	3.68216410335697	4.53633856717978	4.75358199862111	4.06285596353939	4.10853172848168	4.01875889948125	3.87103361366542	-0.854261122038629	0.0837184037627049	0.314591503612373
Merged-chr16-90281142-4	chr16	90281053	90281253	+	757.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 1 of 19)	intron (NM_001346799, intron 1 of 19)	3333.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	3.84298075510044	3.65068615143727	3.74237318410175	3.70701332036879	3.79355024983937	3.69068039115657	3.96316616795313	3.88884067041348	0.307349432700387	0.492213842996779	0.763365053005715
Merged-chr1-180312488-4	chr1	180312294	180312494	+	880.1726070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18082.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	4.07159774775775	3.52004612265175	4.39544620446274	3.69988981596077	4.15111712423748	3.94186740300497	4.26316295013471	3.81681083698027	0.26044233218312	0.604020617165239	0.828350269166784
Merged-chr5-31195988-4	chr5	31195877	31196077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153680, exon 6 of 15)	exon (NM_153680, exon 6 of 15)	2673.0	NM_153680	266781.0	Mm.6118	NM_153680	ENSMUSG00000029146	Snx17	5830447M19Rik|AI790646|D5Ertd260e|b2b1625.1Clo|mKIAA0064	sorting nexin 17	protein-coding	6.836405521907	7.09544952022055	7.07512881156719	6.6239909984668	6.72780805952605	6.80585848985205	6.96948667377519	6.63979792762771	-0.170335825639916	0.438190167851812	0.726297851003868
Merged-chr1-170702518-4	chr1	170702409	170702609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57977.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	5.66686739707962	5.26839243046043	5.37215724496179	5.53007323538687	5.09653950301263	5.00609650322167	5.13530722480636	4.68793716130848	-0.872958998294133	0.00558938330318808	0.0515612641443267
Merged-chr13-112416644-4	chr13	112416565	112416765	+	690.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47405.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	3.66679409602881	3.48380551173339	3.71667748176753	3.67450811841296	3.62505373575926	3.56163732517975	3.49337536998167	3.6138164400396	-0.199771812938059	0.675752550702842	0.866921233647741
Merged-chr1-191131491-3	chr1	191131407	191131607	+	721.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33093.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	3.59651812052734	3.92191305016734	3.37903277275704	3.42563301912055	2.99238673594006	3.15778425825271	3.24368499111354	3.73676724202308	-0.973635723488936	0.108981923649332	0.364496961913157
Merged-chr13-12395844-3	chr13	12395724	12395924	+	936.7333369999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144835, exon 2 of 45)	exon (NM_144835, exon 2 of 45)	449.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	4.0462036109169	4.03483759096952	4.46411936135515	4.40300950809185	4.28549974835417	4.27849609893248	4.40340669050142	4.77416693705483	0.444463584810774	0.284393416579549	0.596289999025483
Merged-chr12-99349860-3	chr12	99349769	99349969	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 2 of 5)	intron (NM_183186, intron 2 of 5)	100205.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	4.02328245337294	3.90437750043077	4.27849710672569	3.94434034670214	3.80369449193986	3.88479418234835	4.13864172581722	3.87228549376863	-0.302243502518076	0.492266532432641	0.763376447368555
Merged-chr15-99033320-2	chr15	99033220	99033420	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009448, intron 1 of 3)	intron (NM_009448, intron 1 of 3)	3429.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	3.55662555020076	3.58883515653847	3.39336274710293	3.29407025633687	3.40922001069053	3.50806205283136	3.19614594086025	3.65344216485201	-0.0210341348671983	0.968003003161289	0.98865348920078
Merged-chr13-45389669-4	chr13	45389570	45389770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153789)	promoter-TSS (NM_153789)	-72.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	8.71658242228092	8.92321399565267	8.57962935979204	8.60536602760305	8.68124611414053	8.81743482426304	8.52606889745055	8.48111422450958	-0.0990593923020517	0.549389498993034	0.797995982957007
Merged-chr15-97174825-3	chr15	97174689	97174889	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7545.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	4.76764116069025	4.81813203782644	5.1081839852548	5.02023741418172	4.88995361432043	4.94275321333525	4.53723366454758	4.87699732124828	-0.238017023635356	0.480651093264972	0.756060899899244
Merged-chr3-133545993-1	chr3	133545893	133546093	+	553.0	f0_balb.idr	Intergenic	Intergenic	-1603.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	3.38209031820894	3.30897734414423	3.2032892923028	3.1708893991342	3.4868783667371	3.37887627084557	3.25418454106384	3.67741803767545	0.694253908905632	0.183910523938842	0.481093979545859
Merged-chr10-61202081-4	chr10	61201959	61202159	+	982.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081127, intron 19 of 21)	intron (NM_001081127, intron 19 of 21)	26797.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	5.34957424814968	6.00939707285849	5.09921804422182	5.02394641262159	6.05676294299051	5.96393592684464	5.82700754011442	5.78529459524903	0.805084519220203	0.0151381599811899	0.105535660068669
Merged-chr1-172347605-4	chr1	172347497	172347697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	Charlie1b|DNA|hAT-Charlie	6387.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	6.47828479724128	6.42910808027948	6.42860578551785	6.50591514535945	6.38980004367539	6.47781474383967	6.49492851972147	6.27760952953296	-0.0784271801882994	0.710194101241532	0.884017407313562
Merged-chr9-59539748-5	chr9	59539682	59539882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010421, exon 1 of 14)	exon (NM_010421, exon 1 of 14)	242.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	5.55950004046989	5.83861930368775	6.09183672460081	5.54623341475743	5.87788988544624	6.24617260117628	5.84727744968905	6.3039585545349	0.497471722112645	0.0738313145248726	0.292705755629158
Merged-chr10-119055858-4	chr10	119055753	119055953	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5354.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	5.82586662542829	5.81194110306988	5.57238372835886	5.78609460850188	6.37173975146704	6.57119860741272	6.38003019975272	6.50176372216029	1.06992553850372	4.02746406157606e-06	0.000122561293047851
Merged-chr5-120907005-4	chr5	120906929	120907129	+	664.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145211, intron 1 of 6)	MIR3|SINE|MIR	496.0	NM_145211	246730.0	Mm.14301	NM_145211	ENSMUSG00000052776	Oas1a	L3	2'-5' oligoadenylate synthetase 1A	protein-coding	3.69510031069981	3.95607955200542	3.64100249287147	3.46055811132059	3.55155168544703	3.96854412776023	3.62671030440684	3.84452001830602	0.178317036584496	0.716791431506303	0.886742397121629
Merged-chr14-17902585-4	chr14	17902498	17902698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	MIR3|SINE|MIR	-79046.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	6.28191972037147	5.58445897741769	7.30427842347889	7.07363232367493	6.00439037714776	6.3807162425379	6.72445677377844	6.66954380305576	-0.355914949893694	0.538759530704278	0.791751031472413
Merged-chr9-27029445-3	chr9	27029355	27029555	+	690.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178113)	promoter-TSS (NM_178113)	639.0	NM_178027	69091.0	Mm.218717	NM_178027	ENSMUSG00000031988	Vps26b	1810012I05Rik|2310075A12Rik|AI848392	VPS26 retromer complex component B	protein-coding	3.7782489601289	3.98009728504135	4.02829520458728	3.67289666535003	4.1897909763307	3.95350575277428	3.76400039282121	3.97970257272537	0.35076788350187	0.43628376381851	0.72505818409614
Merged-chr8-70001350-4	chr8	70001234	70001434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4950.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	8.04544388735581	7.98911390797946	7.81435590098525	7.95769146008197	7.94883590232121	8.00723486198578	7.96925909697933	7.57125110064842	-0.0881712715748416	0.616909889352421	0.835230024941879
Merged-chr3-106785333-4	chr3	106785231	106785431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007651, intron 1 of 7)	AT_rich|Low_complexity|Low_complexity	4818.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	6.86262250803223	6.94653619946425	6.68518853260619	6.83473047393291	7.19944124874823	7.2327770693561	6.92220925449698	7.16510026937819	0.41429481663934	0.0332009279783191	0.178966115117447
Merged-chr7-30232854-4	chr7	30232749	30232949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360649)	promoter-TSS (NM_001360649)	-652.0	NM_025548	66411.0	Mm.27947	NM_025548	ENSMUSG00000006095	Tbcb	2410007D12Rik|AU041393|CG22|CKAPI|Ckap1	tubulin folding cofactor B	protein-coding	5.45269700911706	4.85959839534288	5.53084627720163	5.42143433383908	5.21640125256152	5.03577901090697	5.37229077352042	5.33896711987749	-0.169890246767821	0.594747059116499	0.823592944122747
Merged-chr2-52857790-4	chr2	52857707	52857907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172409)	promoter-TSS (NM_172409)	-61.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	6.60831529165162	6.64477380239028	6.8790682105592	6.6323099270765	6.3597649804473	6.22969910386446	6.23323732156829	5.97393854808734	-0.703728883125606	0.00178916172009855	0.0214350298668944
Merged-chr9-108053063-4	chr9	108052972	108053172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177275)	promoter-TSS (NM_177275)	-87.0	NM_177275	320844.0	Mm.449806	NM_177275	ENSMUSG00000032593	Amigo3	E430002N15Rik|ali3|mKIAA1851	adhesion molecule with Ig like domain 3	protein-coding	7.19018063413028	7.41726343841397	7.13374998502347	7.19683886156737	7.26894322655041	7.33403050483745	7.26313135232	7.23072624818762	0.0465765743862088	0.796984246797357	0.921466077162776
Merged-chr8-46951934-5	chr8	46951862	46952062	+	784.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34925.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	3.39063148514535	3.27045099996563	3.1485659174641	3.44427795373066	3.41266896881681	3.38759811742376	3.26389149836427	3.63892467413004	0.366562394597256	0.48989200876911	0.761966459176932
Merged-chr3-27275399-4	chr3	27275288	27275488	+	907.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-41689.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	4.40955537846365	4.83024772481424	4.45607591820012	4.77316511419102	4.84745437732953	4.5855265056147	4.56512445070734	4.99937328941056	0.262248486903513	0.477691453485584	0.753882310488457
Merged-chr2-158130660-7	chr2	158130558	158130758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 6 of 12)	intron (NM_009373, intron 6 of 12)	15734.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	5.09654681320365	4.92550197724712	5.73138254433759	5.05156954781795	5.13621965173112	4.98127994078666	4.97018000101047	4.83945854581207	-0.455270480663335	0.196016053440619	0.496962659585033
Merged-chr3-89515659-4	chr3	89515576	89515776	+	906.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4488.0	NM_080466	140493.0	Mm.120250	NM_080466	ENSMUSG00000000794	Kcnn3	KCa2.3|SK3|SKCA3	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	protein-coding	5.17405861228328	5.55815072732337	5.01824620510976	5.08766174370227	4.25675237765329	4.72295805691154	4.61109482092686	5.04767366792163	-1.0930483804012	0.00380682528852345	0.0385497250265771
Merged-chr4-8912879-4	chr4	8912778	8912978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161554.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	6.70708508915645	6.88420044369522	7.17726375584478	6.7482144241189	7.1031930794493	7.12847143920387	7.35005499188293	6.94668056401691	0.352767407307814	0.0939559264584715	0.335313574547784
Merged-chr11-58640650-3	chr11	58640545	58640745	+	646.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039047, exon 1 of 6)	exon (NM_001039047, exon 1 of 6)	180.0	NM_001039047	216781.0	Mm.339507	NM_001039047	ENSMUSG00000037124	Trim58	Gm16|Gm1783	tripartite motif-containing 58	protein-coding	3.55999150437946	3.23134063860682	3.51174307464209	3.41281753495291	2.92149399396664	3.34878055420291	3.09616782284648	3.45893271029355	-0.789944187966787	0.173779188815567	0.467932514086273
Merged-chr13-55841496-3	chr13	55841401	55841601	+	854.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-10076.0	NM_011097	18740.0	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	3.45943955534822	3.23337583741638	3.24713955687935	3.2781585930726	3.38595582330325	3.02800387732728	2.98399937497718	3.40802549073555	-0.305196263831143	0.595295189888034	0.823855115901391
Merged-chr17-78989152-4	chr17	78989051	78989251	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171004, intron 2 of 18)	intron (NM_001171004, intron 2 of 18)	19354.0	NM_001171005	75292.0	Mm.252776	NM_029239	ENSMUSG00000024070	Prkd3	4930557O20Rik|5730497N19Rik|PKD3|Pkcnu|Prkcn	protein kinase D3	protein-coding	5.79019576397857	6.05836404013064	6.46691609869413	6.51720437263396	4.69564198131277	4.69804001514049	5.08770315160978	4.85722246895329	-2.49708789592733	3.52813506182896e-14	5.03264780693233e-12
Merged-chr9-120577726-4	chr9	120577622	120577822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073359, exon 1 of 1)	non-coding (NR_073359, exon 1 of 1)	391.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	5.82984690835215	6.19654033209905	5.96803988295111	5.95031821072661	5.88943421289162	5.77088646354427	5.87129401641986	5.8506356363948	-0.230757737475223	0.348204012785159	0.656098754477866
Merged-chr17-36839225-4	chr17	36839137	36839337	+	934.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025599, intron 2 of 9)	Lx4A|LINE|L1	2091.0	NM_001286726	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	4.80513363498712	4.62625824979874	4.4347094755612	4.65030711461144	4.85704604642403	4.70338411897174	4.94879774170321	4.83797975220814	0.428825167901437	0.204228819523712	0.507425868749117
Merged-chr6-125252907-4	chr6	125252809	125253009	+	955.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-12616.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	4.8048458697017	4.78166056338234	5.09953252375028	4.90871106382445	4.72999098247567	4.69640378168414	4.85367903892593	4.5154930879699	-0.40830662417068	0.228495174217187	0.53733507352997
Merged-chr5-121388129-4	chr5	121387986	121388186	+	779.803589	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2471.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	3.33038772225751	3.10596033270057	3.27563812232919	2.97711801902237	3.18558980183018	3.38982568040026	3.01856702420527	3.43250699950941	0.357038270736381	0.52885970478006	0.785320670621494
Merged-chr6-30229146-4	chr6	30229048	30229248	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169576, intron 3 of 4)	intron (NM_001169576, intron 3 of 4)	14655.0	NM_001169577	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	4.56441748679543	4.68296726020735	4.86283618663195	5.35162820083462	5.26768600854481	4.54824191843243	5.04798604149781	5.50138236640703	0.418607554020948	0.306280053568949	0.618740646335478
Merged-chr1-152580615-3	chr1	152580518	152580718	+	846.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	ORR1F|LTR|ERVL-MaLR	44599.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	3.58705664164519	3.53000680917032	3.37456251646551	3.26647978422046	3.53133827469283	3.48843363349062	3.36202488606231	3.25177115444419	-0.0687369684797683	0.895107698248693	0.96073210268323
Merged-chr19-46467251-4	chr19	46467113	46467313	+	837.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 8 of 11)	intron (NM_001025391, intron 8 of 11)	-34435.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	3.96725301683765	3.67834040478297	3.71813745444996	3.90002817368283	3.71190172206174	4.04341975676548	3.95028848549181	3.65993567788936	0.0584506599179934	0.898891337457882	0.962369690585924
Merged-chr13-29634420-3	chr13	29634319	29634519	+	773.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131896, intron 8 of 16)	L1MB3|LINE|L1	221254.0	NR_131896	68916.0	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	3.23016237175844	3.16952094163264	3.39429124609638	3.54547502228544	2.91088557054096	3.28237300367979	3.27466515735859	3.04187084696837	-0.844828191853978	0.14934125712161	0.431568403258457
Merged-chr10-95357263-3	chr10	95357159	95357359	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045337, intron 1 of 2)	intron (NR_045337, intron 1 of 2)	20983.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	3.26876063420915	3.54730458373059	3.62036771297204	3.6334676682433	4.45280447494758	3.67888814306567	4.30615252550586	4.42893085608271	1.98866720919032	0.000142817081690026	0.00273783384261091
Merged-chr12-99883935-4	chr12	99883839	99884039	+	763.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028354)	promoter-TSS (NM_028354)	-497.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	4.29785722343658	4.22698814279545	4.06797584732845	4.10108851809496	3.95836280276955	4.33775769587925	4.31999486045163	4.29579472795074	0.140079170992829	0.730227155086808	0.893000516342052
Merged-chr13-24380805-1	chr13	24380705	24380905	+	580.0	f0_c57.idr	intron (NM_001284519, intron 2 of 17)	intron (NM_001284519, intron 2 of 17)	-34317.0	NM_007717	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	2.45646670884635	2.46638543109576	2.67165853678872	2.41358069287075	2.76031549085026	2.84559878558158	2.84489754199784	2.9651008534048	1.79637498801186	0.00610704165520061	0.05498690464018
Merged-chr19-10279855-4	chr19	10279768	10279968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	25009.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	8.00415762967068	8.23485437478856	8.13933743554006	7.96296425447864	7.9624530620498	7.88858839300145	7.83264751647688	7.8949222630823	-0.243095878639924	0.13640226921715	0.41091739052877
Merged-chr11-11694309-4	chr11	11694207	11694407	+	807.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301863, intron 1 of 7)	intron (NM_001301863, intron 1 of 7)	4130.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	3.95259110921106	4.19897775796285	4.14676268682579	4.36266620228334	4.10663247448337	3.7143959650863	4.17220425323474	4.14421812095531	-0.347578526591312	0.427376018741642	0.71854208328636
Merged-chr16-4551169-4	chr16	4551019	4551219	+	608.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031182, intron 4 of 6)	B3|SINE|B2	8601.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	3.01396593858588	3.26589027855313	3.07867439970026	2.71478142441686	2.97472875355175	3.37049897445977	3.06743424868835	3.40773698086011	0.730488273084295	0.234522117929512	0.544421428220754
Merged-chr19-61226021-6	chr19	61225957	61226157	+	841.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009970, intron 6 of 11)	CpG-7695	2361.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	3.25186976330647	3.37445655058559	3.44677613250985	2.94649296127445	4.01518545247409	3.68403479647201	3.37226277152633	4.13214012444517	1.88077205351488	0.000702725364461918	0.0101582633462703
Merged-chr17-81579930-4	chr17	81579842	81580042	+	962.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	158445.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	4.62249087409751	4.56474718651745	4.62322946743561	5.28390915671725	4.67083680990962	4.62762067983372	4.67954162182726	4.3519374631518	-0.515621235064408	0.197669650793654	0.499044730396766
Merged-chr6-115539137-4	chr6	115539041	115539241	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5563.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	5.0179041496967	5.03172283284244	4.73307502302777	4.76133322947476	4.89319053960489	4.94638671621278	4.78802944153072	4.84456791806715	-0.0319142331381872	0.922297975342574	0.971228493881158
Merged-chr17-34398298-4	chr17	34398158	34398358	+	958.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001177)	promoter-TSS (NM_001001177)	-562.0	NM_001001177	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	5.14156278833535	5.094580508182	4.5515054859755	4.4126761740337	5.63949848164285	5.31653469337526	5.14778841764815	5.10684515108275	0.950332357719476	0.00976864003797335	0.0776375646787522
Merged-chr1-14579606-4	chr1	14579533	14579733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	176333.0	NM_001360810	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	6.51764147172689	6.64333285337044	6.61676780831625	6.5500892429933	6.75941754963398	6.74521035789762	6.88692403069666	6.53099627615455	0.225174630363559	0.272089087835973	0.583670356609054
Merged-chr15-99381333-4	chr15	99381248	99381448	+	938.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-10866.0	NM_001310622	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	4.5922784943469	5.02442084675889	4.90952250450307	4.32187910206725	5.15854960538715	5.2140076636374	4.8856508169156	4.75774524996474	0.587982526103889	0.114377389494731	0.374053214190005
Merged-chr2-103058428-3	chr2	103058324	103058524	+	788.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175094, intron 2 of 10)	intron (NM_175094, intron 2 of 10)	15089.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	4.01535568980205	3.684067679513	3.92583141754384	4.01128679109227	3.9467265313386	3.72636436210954	3.6541603793541	3.72168566725453	-0.415103515209196	0.368873550424487	0.673283853775023
Merged-chr7-128745365-4	chr7	128745263	128745463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029982, intron 1 of 18)	L2c|LINE|L2	493.0	NM_001029982	207352.0	Mm.297105	NM_001029982	ENSMUSG00000055319	Sec23ip	D7Ertd373e|p125	Sec23 interacting protein	protein-coding	5.42801932150963	6.33359241447288	5.36660107840069	5.02038742778575	5.66458576134999	5.94806104173559	5.57123905350467	5.48458185975243	0.0652872701193212	0.860927377284886	0.947505988214317
Merged-chr1-149954164-4	chr1	149954059	149954259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	7131.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	6.26330292069281	6.00347335199663	6.37459928084724	6.51832375774284	6.5907943941042	6.34137787849553	6.35934523212177	6.18078808030729	0.104465604480506	0.668229769990203	0.862853327010606
Merged-chr5-105745492-4	chr5	105745327	105745527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122768, intron 2 of 2)	intron (NM_001122768, intron 2 of 2)	44617.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	5.52880657549845	5.40093461703336	5.74067361223998	5.65468865783461	5.83083523818106	5.84034368277473	5.80448987889806	5.76063122569733	0.362841869294209	0.158130873943103	0.445038229250933
Merged-chr2-79180948-4	chr2	79180826	79181026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74500.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	5.75704629239575	5.50852765389517	5.99244712513302	5.89611091263193	5.3522656938981	5.45883948963857	5.44225151153637	5.57827488833217	-0.591371303686426	0.03174625772196	0.17379379160063
Merged-chr1-106713866-1	chr1	106713766	106713966	+	995.0	f0_balb.idr	5' UTR (NM_177410, exon 1 of 1)	5' UTR (NM_177410, exon 1 of 1)	424.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	4.81345679640413	4.63471735883724	5.44330498818755	4.99773461358646	4.5489353493661	4.8335713729683	4.63495547935045	4.61091442466573	-0.716450446527711	0.0541521732766499	0.242986669713085
Merged-chr14-79548461-3	chr14	79548365	79548565	+	950.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	Lx5|LINE|L1	32791.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	3.66227067660418	3.2316909247773	3.21354773096818	3.63251102685371	3.25422799662121	3.57304469889954	3.54942606257928	3.56222936197418	0.0899221160458359	0.868684531486818	0.950774466256313
Merged-chr8-105596764-7	chr8	105596573	105596773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8556.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	4.18053673642939	3.97033397522652	4.13138008655034	4.11748485244491	4.53076315793055	4.76297116572141	4.42450889142036	4.31731675125737	0.992113259013306	0.0105132311138883	0.0818821837679672
Merged-chr18-32857361-1	chr18	32857261	32857461	+	945.0	f0_balb.idr	intron (NM_001110015, intron 16 of 22)	intron (NM_001110015, intron 16 of 22)	-20074.0	NR_045381	75795.0	Mm.382634	NR_045381	ENSMUSG00000097553	4930455D15Rik	-	RIKEN cDNA 4930455D15 gene	ncRNA	5.13814609458151	4.81737193810527	4.98343943378573	5.41750799931159	4.64120368031843	4.59250682330121	4.95900810788683	4.40601907157505	-0.926380829258413	0.0115888380707916	0.0876601386865966
Merged-chr7-132656778-4	chr7	132656661	132656861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	46118.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	5.23710407235022	5.82302414375833	5.48587918080187	5.76782798689059	5.4330811253292	5.34720842642779	5.71084717351729	5.42448108657346	-0.219524679820978	0.458182403032764	0.741119194927503
Merged-chr13-112012859-3	chr13	112012764	112012964	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144928.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	5.4736411309182	4.83577971207042	5.47465764852194	5.86281127285294	4.06582005411951	4.00569645594653	3.99260790549417	4.13443740862049	-3.21956735339216	1.20114471524728e-12	1.26100707502339e-10
Merged-chr4-128655518-2	chr4	128655418	128655618	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	816.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	3.25526885408419	3.19431770087213	3.46818095959008	3.24581556482822	3.33927257820651	3.1789355700448	3.29936198870387	3.13324150558327	-0.169470952215196	0.753610200117488	0.902798885097597
Merged-chr13-97546326-4	chr13	97546232	97546432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13668.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	6.84979234503874	6.81340983043909	6.95742265673837	7.18487101540156	6.70410593531081	7.02775511865901	6.97204948387544	6.9901755903797	-0.0707550062850925	0.735451445352257	0.895614414024255
Merged-chr13-106947076-4	chr13	106946968	106947168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025447)	promoter-TSS (NM_025447)	-61.0	NM_025447	66254.0	Mm.9563	NM_025447	ENSMUSG00000021692	Dimt1	1500031M22Rik|AV111347|Dimt1l	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	protein-coding	8.59919720782285	8.7386508217058	8.53440747537825	8.77658895384985	8.60250338144666	8.46608480890732	8.7523425894491	8.41203232173524	-0.130245765156509	0.415559500929977	0.709797021974572
Merged-chr11-75169776-2	chr11	75169676	75169876	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010430, exon 1 of 2)	5' UTR (NM_010430, exon 1 of 2)	479.0	NM_010430	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	2.80896680480094	2.89278805215481	2.80925802953548	2.85835625447411	2.97906889467454	3.10442328461257	2.98484700018889	2.99453476641603	0.73824841050895	0.20532782532838	0.508859472252119
Merged-chr12-56434748-4	chr12	56434640	56434840	+	923.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88846.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	4.52787492201851	4.73522658255467	4.48491762178815	4.83463161899592	4.9122459889262	4.52275796426604	4.59051807557428	4.64829808686697	0.042049430450354	0.907863847227657	0.965902974228235
Merged-chr16-20425936-4	chr16	20425844	20426044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176839, intron 1 of 6)	CpG	450.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	6.03490721395301	6.51966720349645	6.52657714490873	6.02494311452377	6.29338642332356	6.44336741876723	6.44563161418819	6.40755405183049	0.159283893990452	0.516579814473554	0.778279996996913
Merged-chr11-107468424-4	chr11	107468283	107468483	+	872.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	2337.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	4.00780004070681	4.16992194713703	3.95686756159306	4.1188587973907	4.13397151694434	4.07976708132382	3.88791691160451	4.50072547049732	0.253450140781741	0.554022032819311	0.800510216273105
Merged-chr9-65577100-5	chr9	65577034	65577234	+	937.4266359999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 1 of 5)	intron (NM_153119, intron 1 of 5)	2953.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	4.0796618742517	3.49798260085816	4.17615549890095	3.83724934569673	4.54818605268528	4.20771120820259	4.11076164995619	4.69568954550574	1.25010197121235	0.0069400569949095	0.0605375388285126
Merged-chr5-123155622-4	chr5	123155533	123155733	+	872.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040398, intron 7 of 16)	B3|SINE|B2	13440.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	4.15602101847369	3.75615813057785	4.00646484946153	4.22362882163859	4.03107838715379	4.54315463853965	4.22868948526905	4.55570666936145	0.726278890811471	0.098929840582356	0.344824222368548
Merged-chr7-16841713-4	chr7	16841627	16841827	+	822.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133789)	TTS (NM_133789)	-1175.0	NM_001252458	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	4.10633503238938	3.94125400299592	4.10695807511648	4.15814159594301	4.04712158336608	3.80438266810341	4.13258914610945	4.0113813856627	-0.204868636118155	0.627118007181553	0.841002239063709
Merged-chr16-13239779-3	chr16	13239675	13239875	+	888.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-16706.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	3.3807622142249	3.21352644657345	3.03367362553758	3.88775100039437	3.35739431700107	3.55798728970063	3.86595097035193	3.83978808262142	0.755038283602793	0.23678663574553	0.546842605552418
Merged-chr5-150595570-4	chr5	150595459	150595659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1034.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	8.95707159080798	9.0145360684602	8.84526662540935	8.75409958402408	8.94655006052077	8.92018715105094	8.9748112831911	8.87475326055953	0.0458497162765484	0.751563600050372	0.902195066080063
Merged-chr11-77680248-3	chr11	77680138	77680338	+	804.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-5901.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	3.30405318588867	3.42057420945562	3.41500570055353	3.42790226372927	3.13340603269454	3.22863260414563	3.40126412169411	3.30276693997537	-0.474139850581507	0.369320635722991	0.673633495544454
Merged-chr4-135661513-3	chr4	135661417	135661617	+	913.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24940.0	NM_174851	242700.0	Mm.259623	NM_174851	ENSMUSG00000062157	Ifnlr1	CRF2-12|Il28ra	interferon lambda receptor 1	protein-coding	3.91307970016712	4.51668580516882	4.50174203929852	4.18690624462514	3.77689237687003	3.80285249780056	3.78792996730646	3.85710954117333	-1.34918153866423	0.00328105578011596	0.0342336953053172
Merged-chr9-37489001-7	chr9	37488876	37489076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146222)	promoter-TSS (NM_146222)	-345.0	NM_146222	235184.0	Mm.127892	NM_146222	ENSMUSG00000042138	Msantd2	2810450G17Rik|9530092B10Rik	Myb/SANT-like DNA-binding domain containing 2	protein-coding	6.72889913952389	6.53478853821292	6.68450356626764	6.80245987049514	6.73476683592402	6.96493633526131	7.14099297218246	6.992842139676	0.368934832024961	0.0759562190422261	0.297746872739652
Merged-chr5-97355346-4	chr5	97355251	97355451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	36979.0	NM_001033191	97243.0	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	6.359274857361	6.44926584181193	6.58104759830056	6.42500212984536	6.53132206449882	6.51851928743336	6.78642140467362	6.33718313138457	0.146253551303358	0.503523647334952	0.770436586300708
Merged-chr14-30654359-4	chr14	30654269	30654469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177815)	promoter-TSS (NM_177815)	-6.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	7.19707189914375	7.2838933619416	6.88679995165129	7.22179769567426	7.65184292839551	7.2838534268656	6.95977528667653	6.77893010984147	0.0868066880044428	0.721791289449687	0.888926261190035
Merged-chr5-125521375-4	chr5	125521276	125521476	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11042.0	NM_001190352	208151.0	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	5.01799189448294	5.24160516056791	5.08981672465793	5.02650969542802	5.44590075211024	5.15919719678908	5.5667786147284	5.15356723003557	0.472358634371754	0.117056879471318	0.378522336026731
Merged-chr7-98805572-4	chr7	98805470	98805670	+	992.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-29542.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	5.24374854942681	5.00341475069311	4.86577250547561	4.9167464083118	5.56027672073686	5.356733716488	4.99260119698944	5.14840109092311	0.5332443305101	0.0967265345779906	0.340701603559323
Merged-chr13-34199630-4	chr13	34199557	34199757	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 5 of 10)	intron (NM_001033167, intron 5 of 10)	36693.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	4.06330496108969	3.84712113076436	4.12676974923449	4.04109814575647	5.46941437536763	5.36572818319095	5.58537986875105	5.21509732869657	2.89931503022538	1.51823102074788e-14	2.2798769161564e-12
Merged-chr2-25496632-4	chr2	25496516	25496716	+	864.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2705.0	NM_029958	77701.0	Mm.99123	NM_029958	ENSMUSG00000026943	Lcn12	9230102M18Rik	lipocalin 12	protein-coding	4.26794683121842	4.05166844836755	4.17446112464201	4.05769930838531	4.37033260832403	4.35022112812178	4.29372009132863	4.78020986453284	0.791650735030895	0.0447510703759709	0.216101522272132
Merged-chr17-29490527-4	chr17	29490433	29490633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008842)	promoter-TSS (NM_008842)	-512.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	8.89440974951039	9.17459248720727	8.84901387962746	8.54464064413471	9.09152741575743	9.23867142009304	9.15342508035585	8.8072034607659	0.249102397301068	0.179897908294028	0.476197551799202
Merged-chr8-88667976-4	chr8	88667871	88668071	+	739.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 4 of 12)	intron (NM_145857, intron 4 of 12)	20624.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	3.77000371079404	3.62971811773494	3.71615308959189	3.80599276848523	3.89547570316478	3.89114546633827	3.58713236689054	4.32019270552955	0.604323209694684	0.203800695212937	0.506815330714963
Merged-chr2-34775510-2	chr2	34775410	34775610	+	839.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163434, intron 8 of 8)	intron (NM_001163434, intron 8 of 8)	3420.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	3.43529484751987	3.45107106631432	3.25536099358801	3.25353460016841	3.23210066376633	3.66122920617371	3.71774271408988	3.43387248715508	0.58250932941467	0.267249001946391	0.578913439530787
Merged-chr9-100503932-4	chr9	100503851	100504051	+	823.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 2 of 3)	B1_Mm|SINE|Alu	2905.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	3.64679295788054	3.41136212608066	3.69409511923567	3.16737063962147	3.59313757103333	3.30832945391811	3.48150351149338	3.19407613505721	-0.264484753461555	0.635219817316273	0.845633612363053
Merged-chr11-62224142-4	chr11	62224059	62224259	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-24825.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	5.13200666729233	5.12178143627104	5.31557817165035	5.10831853876703	5.02221471032047	5.36961084803803	5.04114214745759	5.19317560184529	-0.019284113894452	0.949121250755375	0.981683593064559
Merged-chr11-81996354-4	chr11	81996244	81996444	+	809.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27948.0	NM_001034013	11418.0	Mm.234998	NM_007384	ENSMUSG00000020704	Asic2	ACIC2|Accn1|BNC1|BNaC1|BNaC1a|Mdeg	acid-sensing (proton-gated) ion channel 2	protein-coding	4.15382933133534	4.17297718673541	4.00912799451359	3.64434603909965	4.08884094677532	4.53370264709421	4.22343490847108	4.05694993211669	0.609001262952239	0.171978968414937	0.465252629537357
Merged-chr18-60844586-2	chr18	60844486	60844686	+	898.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011552, intron 2 of 24)	intron (NM_011552, intron 2 of 24)	4378.0	NM_011552	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	2.68451758982259	2.82713923158987	2.68481180197367	2.42932606787079	2.69524866054076	3.16408436825036	2.86872142938434	2.87849734563586	1.17609999829655	0.0753901952106644	0.296475066569054
Merged-chr19-11766616-4	chr19	11766508	11766708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3807.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	6.34159334464112	6.198865076733	6.39449770274013	6.36013691993182	6.18323592044466	5.81029119078402	6.10081418833601	6.51824299236532	-0.219560441004998	0.374733074960148	0.677891254741963
Merged-chr10-63176604-4	chr10	63176502	63176702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182992, intron 2 of 19)	Charlie1a|DNA|hAT-Charlie	27350.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	7.22132632687473	7.13489084460293	7.12025881587285	7.56945850715495	6.97860015710364	7.10643118911921	7.18642461672178	7.33212231333626	-0.185629577578489	0.372111740582099	0.67605651493244
Merged-chr14-64943940-4	chr14	64943840	64944040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 1 of 9)	ID4_|SINE|ID	5917.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	5.61450195089453	5.53973271103215	6.10148197565224	5.9725660790694	5.26745418054794	5.558613180957	5.97557572310697	5.58429461777206	-0.362233010930654	0.234853786373191	0.544702472055334
Merged-chr4-43959883-4	chr4	43959788	43959988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	2186.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	7.40664441048134	7.31838879682006	7.35079320363503	7.10265746678408	7.37555177975268	7.03323781505184	6.86297815032409	6.72915115933404	-0.350521260770373	0.111746313376722	0.369429242293193
Merged-chr4-55342001-3	chr4	55341899	55342099	+	901.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-8043.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	3.9054618006261	3.7461022453843	3.65491588173992	3.88205778902088	3.43230813523805	3.45939610283104	3.74570820197875	4.07351455844572	-0.305563344640839	0.544783558255604	0.795521198272179
Merged-chr19-5801174-4	chr19	5801088	5801288	+	920.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002847, exon 1 of 1)	non-coding (NR_002847, exon 1 of 1)	1484.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	4.22857630497635	4.28832249609965	4.02640637870672	4.03736566025145	4.53015655600633	4.35705127849119	4.21070290869277	4.75580110683386	0.808651611521567	0.0418914930502964	0.207371485070384
Merged-chr15-78331710-3	chr15	78331616	78331816	+	905.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	5726.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	4.01018033524001	3.8442329862602	4.01080709119068	3.83432046250495	3.55568652501961	3.83516583853881	3.64569662572032	3.86951094510008	-0.577381520904605	0.208945252731377	0.513305520265296
Merged-chr7-27860585-4	chr7	27860492	27860692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024726)	promoter-TSS (NM_001024726)	7.0	NM_001024726	545938.0	Mm.458180	NM_001024726	ENSMUSG00000020420	Zfp607a	4732475C15Rik|Zfp607	zinc finger protein 607A	protein-coding	6.35446882835089	6.10381533514249	6.68350689932167	6.32065682397637	6.18253796284612	6.3192310849847	6.56453747635758	6.07268105347266	-0.121424485912039	0.625992377958505	0.840193328664115
Merged-chr9-106159935-4	chr9	106159799	106159999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1761.0	NM_174846	235582.0	Mm.335420	NM_174846	ENSMUSG00000020258	Glyctk	6230410P16Rik|C430006L12	glycerate kinase	protein-coding	5.17128463484618	5.68716933854646	4.65179032286366	4.82375917487962	5.39913927198569	5.66416694851718	5.3007745917664	5.26398813772595	0.487264287695671	0.184553436426027	0.482094664450069
Merged-chr1-127225863-3	chr1	127225763	127225963	+	862.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	20877.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	3.45994315419598	3.23489673929125	3.35430973274166	3.34394578888065	3.3209842053859	3.28745275475964	3.10209573525307	3.4584228254518	-0.178928541819526	0.736870600245066	0.896086114515881
Merged-chr10-11343669-4	chr10	11343576	11343776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010146, exon 1 of 4)	exon (NM_010146, exon 1 of 4)	231.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	6.96655737328306	7.06114037202977	7.39354281496983	7.49093473619414	7.07083337397895	6.64314813777901	7.1018690975587	6.76632093945119	-0.464912611434774	0.0398722075064711	0.201371672085373
Merged-chr2-32834679-4	chr2	32834558	32834758	+	820.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113569, intron 1 of 19)	intron (NM_001113569, intron 1 of 19)	12574.0	NM_009295	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	3.7894233193152	3.60040540835744	3.52281963214862	3.91629539138566	3.74474068432939	3.752340673525	3.82078419402064	3.52110822817224	-0.043559760920065	0.928223890576641	0.973938623004139
Merged-chr19-46459477-3	chr19	46459355	46459555	+	748.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 8 of 11)	intron (NM_001025391, intron 8 of 11)	-42193.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	3.24315902612454	2.92848381277651	2.92268673089325	3.12685408332651	2.86885710030886	2.75755013483775	2.71854039983487	2.72489081028199	-1.33407839257479	0.0397687562098804	0.201047318639574
Merged-chr4-150568780-4	chr4	150568654	150568854	+	951.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	83420.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	4.70109064717783	4.27962989296654	4.58906783385809	4.45118121560832	4.50595755692644	4.40818961285842	4.7144652170716	4.73413133605483	0.199868919556039	0.586829189818546	0.818903628768642
Merged-chr3-87930216-4	chr3	87930121	87930321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177663)	promoter-TSS (NM_177663)	-26.0	NM_153562	229503.0	Mm.296008	NM_153562	ENSMUSG00000004896	Rrnad1	-	ribosomal RNA adenine dimethylase domain containing 1	protein-coding	7.3192831538072	7.42780933724883	7.12044548950548	7.05296450316642	7.4572083170662	7.59597007818746	7.27377606154124	7.10334213311919	0.187416369716843	0.357713922691329	0.663837540417421
Merged-chr3-137950643-4	chr3	137950548	137950748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	30901.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	5.49764541237723	5.94528722789858	6.22523231131448	5.80407771078102	5.68916481277002	5.76508898749345	5.92664571069424	5.81774650874737	-0.147008563706979	0.591854347773619	0.821848634889742
Merged-chr15-9748883-4	chr15	9748755	9748955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177123)	promoter-TSS (NM_177123)	13.0	NM_177123	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	6.83015216373634	6.63399510264505	6.52390782538235	6.79404308657013	6.99606515616174	6.71881455482912	7.14908350909079	6.60337024660226	0.260152805534253	0.240380510033066	0.550870712287303
Merged-chr3-96220892-4	chr3	96220789	96220989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175662)	promoter-TSS (NM_175662)	-9.0	NM_175662	319176.0	Mm.358954	NM_175662	ENSMUSG00000068855	Hist2h2ac	H2a-613b	histone cluster 2, H2ac	protein-coding	7.60007524233492	7.51354656241464	7.21661071120242	7.21757126223966	7.72655195268686	7.92644864032466	7.85704588979644	7.83352974677653	0.585298710256498	0.0014193712642267	0.0178623456888954
Merged-chr1-86440705-4	chr1	86440616	86440816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14387.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	6.34399154340053	6.37941359045333	5.59746380377201	5.97676794687357	6.32293889183285	6.52038422652819	6.49225086904676	6.32278593048222	0.461718639371808	0.0789200492065355	0.304016452145991
Merged-chr8-25982357-4	chr8	25982246	25982446	+	919.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029037, exon 5 of 5)	3' UTR (NM_029037, exon 5 of 5)	-5602.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	3.64720585309503	3.51234898097696	3.79821647557737	3.6533649631135	3.47773367765241	3.71089064315792	3.46493859756896	3.93010939135943	0.00158042272583322	0.997434939623849	0.998991886373499
Merged-chr17-37197371-3	chr17	37197257	37197457	+	805.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001011518, exon 1 of 1)	exon (NM_001011518, exon 1 of 1)	609.0	NM_001011518	258219.0	Mm.377382	NM_001011518	ENSMUSG00000043827	Olfr94	MOR256-32P	olfactory receptor 94	protein-coding	3.92657306865733	3.91883548710555	4.05744282404449	4.10800856936474	3.33719281245224	3.4072181153487	3.76617684936516	3.61642807145653	-1.47168325602671	0.00304968996798155	0.0324087611572049
Merged-chr4-102930857-4	chr4	102930755	102930955	+	931.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144906, intron 17 of 23)	intron (NM_144906, intron 17 of 23)	-55524.0	NM_001163767	67344.0	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	5.39873336707842	5.47998400453318	5.75831818218539	6.11695326477593	4.82695966886567	4.37158787709556	4.9906748010978	4.76746669990379	-1.81183406845018	5.65124155004159e-07	2.07345217675469e-05
Merged-chr17-67207254-4	chr17	67207159	67207359	+	815.5500490000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	147200.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	3.142557739473	3.04755701739279	3.21073491178164	2.93915314893288	3.6564603353671	3.77880934477665	3.43818217133581	3.78856968830211	2.13177500549372	5.0962658145167e-05	0.00115011764239532
Merged-chr19-16122561-4	chr19	16122464	16122664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-10267.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	6.5215035026528	6.79499855367052	6.43103742577212	6.30632023148285	7.27811130863473	7.17873089492497	7.11430627300623	7.06786387743937	0.911874164380313	1.42352010625266e-05	0.00037906748089397
Merged-chr15-103342627-4	chr15	103342517	103342717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2531.0	NM_013866	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	5.18730388658251	5.4419730116602	4.43795308745385	4.94615258376295	5.37436550012047	5.06180610094856	5.00432989311031	4.7208919823062	0.0291960518188078	0.940185331309869	0.978483933988934
Merged-chr2-171719393-2	chr2	171719293	171719493	+	972.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	243406.0	NR_040509	75655.0	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	3.3259622754583	3.10523038199764	3.10459007594984	3.6251801945637	3.16659488832781	3.01617371148598	2.83012199538776	2.97622739637763	-1.23619312637197	0.0512483217630433	0.234978375081916
Merged-chr2-120153721-4	chr2	120153614	120153814	+	985.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 1 of 5)	intron (NM_133838, intron 1 of 5)	861.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	6.10178346396299	5.60478576847426	5.74530132341506	6.08769396664628	5.55356162964672	5.19660947154606	5.69164932454057	5.66604884396885	-0.60676704359776	0.0355183860587786	0.187062942832955
Merged-chr4-155249418-4	chr4	155249275	155249475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190445)	promoter-TSS (NM_001190445)	-591.0	NM_001190445	67513.0	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding	5.07331691704277	5.38295603084465	4.96033222345338	5.30080723098941	5.49457850595632	5.53888374551247	5.44874716745107	5.41838683923338	0.483245108293863	0.0974843585231601	0.342084359856045
Merged-chr4-119422341-4	chr4	119422223	119422423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355214)	promoter-TSS (NM_001355214)	97.0	NM_001355214	106564.0	Mm.27245	NM_026494	ENSMUSG00000028636	Ppcs	6330579B17Rik|AI413471|AI790434	phosphopantothenoylcysteine synthetase	protein-coding	5.73255654730007	5.98455369977979	5.70942343385297	5.27479599886066	5.68280791082696	5.64504960648038	5.63100602188817	5.30835164418144	-0.182278318793804	0.547055478382755	0.79668122846684
Merged-chr9-18473650-4	chr9	18473579	18473779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028935)	promoter-TSS (NM_028935)	-34.0	NM_028160	72230.0	Mm.289689	NM_028160	ENSMUSG00000074500	Zfp558	1700007A21Rik|4932704I17Rik|Zfp558-ps	zinc finger protein 558	protein-coding	7.17813553268277	6.89694466667815	6.84217277309467	7.37093290031633	7.01943479669837	6.78542383521745	7.24793192749955	7.07176123679315	-0.0826192007897137	0.708858773351708	0.883129865898889
Merged-chr8-77442630-4	chr8	77442512	77442712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-74444.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	7.16200930128708	7.42993843177746	7.39530804629597	7.29313877686806	7.36902015854014	7.23156443160705	7.1615528354406	7.16975478919452	-0.111973265817187	0.541488779777204	0.793272720948538
Merged-chr13-58148596-3	chr13	58148485	58148685	+	686.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126543, exon 2 of 2)	non-coding (NR_126543, exon 2 of 2)	1636.0	NR_126543	67339.0	Mm.121929	NR_126543	ENSMUSG00000097717	1700066J03Rik	-	RIKEN cDNA 1700066J03 gene	ncRNA	3.08025115338132	3.58306313211722	3.26967337308451	3.12308473596491	3.13328568479661	3.49743344032986	3.19810460596167	3.38020568327321	0.104624523313679	0.853416739298839	0.944788460884744
Merged-chr4-33310991-6	chr4	33310951	33311151	+	778.0888669999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305273, intron 1 of 15)	intron (NM_001305273, intron 1 of 15)	740.0	NM_001305273	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	3.53215255849696	3.244673967152	4.02406680038567	3.2694340646986	3.40111982125778	3.47486936033109	3.21710187502157	3.73182578084579	-0.270637407977092	0.640337697488244	0.848084345301076
Merged-chr6-22474812-4	chr6	22474698	22474898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118717.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	6.52349507979297	6.21555090260439	6.55659437456117	6.71794435280461	6.5873009487642	6.4906007774354	6.53868914191109	6.14629252812466	-0.100442537216889	0.672339047943189	0.865119100634158
Merged-chr5-21411510-4	chr5	21411430	21411630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 1 of 18)	intron (NM_029195, intron 1 of 18)	13147.0	NM_029195	75172.0	Mm.426695	NM_029195	ENSMUSG00000064280	Ccdc146	4930528G09Rik|mKIAA1505	coiled-coil domain containing 146	protein-coding	7.90316672406943	8.039653021755	7.94054451429366	7.95198068955949	8.17796828316107	8.26546022236848	7.90239913013599	7.8844484479101	0.141324087263628	0.409079935706489	0.704791463679563
Merged-chr3-123267383-4	chr3	123267248	123267448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027135)	promoter-TSS (NM_027135)	-148.0	NM_027135	69608.0	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	7.58061652028609	7.50173716335923	7.47260468742541	7.27143273129383	7.52659116807245	7.59146608619364	7.66868351093745	7.66096360522488	0.21189183775795	0.229034125526506	0.53796264588342
Merged-chr19-46511007-4	chr19	46510909	46511109	+	989.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	9361.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	4.94561822113745	5.30922813104845	4.90818971839661	5.0279434088966	5.58841285548212	5.509501152972	5.13209505386154	5.27794748246059	0.624401510533302	0.0448694821736149	0.216454328704637
Merged-chr5-137886157-4	chr5	137886044	137886244	+	933.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14386.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	4.44676836224882	4.42971402429578	4.12621799750102	4.2418875115054	4.56780517982079	4.53537844361631	4.3439976402297	4.31676876998729	0.321539263757972	0.397590111872322	0.695966027419521
Merged-chr2-35196430-4	chr2	35196316	35196516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026697, intron 1 of 7)	intron (NM_026697, intron 1 of 7)	4704.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	6.51683708823542	6.46002954991654	6.20772756585178	6.63046730846112	6.50285907101339	6.38510430483732	6.29378919829312	6.62166399062488	-0.0241625665980538	0.914971132362973	0.968369617130045
Merged-chr3-154286581-3	chr3	154286486	154286686	+	995.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43974.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	4.57342689656503	3.82005192599221	4.34831900781995	4.84986829137673	3.96125901950951	3.91413074067794	4.10572288402613	4.12101194050677	-1.08070019463239	0.0226010368934056	0.138838284718712
Merged-chr12-91384492-4	chr12	91384396	91384596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181815)	promoter-TSS (NM_181815)	-87.0	NM_181815	75216.0	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	8.29927145486624	8.30212370731097	8.30633879295516	8.70066902326346	8.46367142951973	8.47260189212334	8.84188182911141	8.43609400490048	0.178523819985943	0.332676644074604	0.643580601966062
Merged-chr7-79392311-4	chr7	79392201	79392401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145946)	promoter-TSS (NM_145946)	-37.0	NM_145946	208836.0	Mm.349493	NM_145946	ENSMUSG00000039187	Fanci	-	Fanconi anemia, complementation group I	protein-coding	6.26886947189586	6.66515539938525	5.94321811975626	6.27418121479539	6.26997657685227	6.48383874887792	6.57137053859336	6.28454113744825	0.130185520048902	0.602988087477496	0.827895617176754
Merged-chr9-45955244-4	chr9	45955169	45955369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172257)	promoter-TSS (NM_172257)	-20.0	NM_172257	214597.0	Mm.379345	NM_172257	ENSMUSG00000034908	Sidt2	B930096O19|BC023957|CGI-40	SID1 transmembrane family, member 2	protein-coding	6.58656699546735	6.6157897123342	6.45512019012841	6.50885596416181	6.75199883258067	6.54159833740528	6.56967966131334	6.50185828218053	0.0893721065721698	0.667516491836144	0.862526891994425
Merged-chr3-97775936-4	chr3	97775785	97775985	+	959.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 8 of 46)	intron (NM_001039376, intron 8 of 46)	-7871.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	4.49717910579735	4.72075108400533	4.3564359815626	4.63128692643782	5.02847412519706	4.91342101585825	4.43277991142765	4.87827581838756	0.57156880012838	0.118827983901072	0.3813389862111
Merged-chr12-102748319-4	chr12	102748232	102748432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142939, intron 1 of 1)	intron (NM_001142939, intron 1 of 1)	4572.0	NM_177140	320351.0	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	7.15042747974088	7.21251862091615	7.07931822504009	7.72109460446769	7.26995105135812	7.21912102592573	7.31997710298853	7.24785553557063	-0.0963933348766462	0.656520292176176	0.856685082437634
Merged-chr4-34733660-4	chr4	34733543	34733743	+	834.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3437.0	NM_001347062	69329.0	Mm.389548	NM_027041	ENSMUSG00000028294	Cfap206	1700003M02Rik|AU024269	cilia and flagella associated protein 206	protein-coding	3.84789528761693	4.06148077449083	4.10567720805885	4.2037194384594	4.08733165465423	4.02584808724611	4.37526242787984	4.14896451228007	0.237117265354878	0.572539466647796	0.811251013052168
Merged-chr5-86129994-4	chr5	86129923	86130123	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172712, intron 23 of 32)	intron (NM_172712, intron 23 of 32)	42720.0	NM_172712	231380.0	Mm.34012	NM_172712	ENSMUSG00000035898	Uba6	4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2	ubiquitin-like modifier activating enzyme 6	protein-coding	5.23580871016951	5.05624070695083	5.41475018897699	5.81875345614804	5.34580529791436	5.05234202856596	5.24216219598143	5.32515044681417	-0.331493938190386	0.316145481056611	0.628034424554481
Merged-chr15-33212023-4	chr15	33211914	33212114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018755, intron 2 of 8)	MIR|SINE|MIR	128885.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	5.72589504131916	5.71848578591334	5.53300296067997	5.72962275579614	6.06807577367967	5.90291395047936	6.0707395540467	5.99857149704285	0.531274818705638	0.029524050022112	0.165471839096371
Merged-chr14-62963796-2	chr14	62963696	62963896	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20714.0	NM_001037751	432867.0	Mm.99387	NM_001037751	ENSMUSG00000075574	Defb48	Defb42|EG432867	defensin beta 48	protein-coding	3.39504690535354	2.93892367761466	3.22108598903923	3.04182786682539	3.27596615930391	3.39695769587282	3.5332231983532	3.59427126358723	1.08875930610057	0.0480104004853311	0.226057524531171
Merged-chr8-105701141-4	chr8	105701034	105701234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348349)	promoter-TSS (NM_001348349)	-14.0	NM_001047436	56513.0	Mm.472753	NM_019695	ENSMUSG00000005699	Pard6a	0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40	par-6 family cell polarity regulator alpha	protein-coding	5.37788642672598	5.88123549221967	5.27991761859171	5.2518645925062	6.0331141527631	5.61841889897487	5.52841647860334	6.04843490667166	0.609107458467516	0.0485185417499279	0.227329966324165
Merged-chr3-31139229-4	chr3	31139115	31139315	+	816.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10705.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	3.7968484845937	3.7891642958911	3.56388294153944	3.69449139078688	4.05908282035609	4.41044022469312	3.88357362757139	3.74063928381079	0.924080070371823	0.0465890226566243	0.221905254698273
Merged-chr10-125995069-4	chr10	125994979	125995179	+	983.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177152, intron 4 of 18)	ORR1E|LTR|ERVL-MaLR	28860.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	5.23118992380481	5.07665609154886	5.2930121762171	5.06529178409069	5.31411521166294	5.20691200943852	5.70887898352094	4.989246782837	0.314875121826856	0.320074028307198	0.631859556610888
Merged-chr11-96777687-4	chr11	96777585	96777785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163389)	promoter-TSS (NM_001163389)	-130.0	NM_001163389	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	8.61426698527404	8.84132306004289	8.54087905524153	8.3880354694718	8.71156601453976	8.68937996311198	8.48715102285852	8.48636307298472	-0.00429223561357722	0.979792295571101	0.992760647616391
Merged-chr10-93078628-2	chr10	93078480	93078680	+	633.0	f0_balb.idr|f0_c57.idr	intron (NM_001347060, intron 1 of 67)	intron (NM_001347060, intron 1 of 67)	3016.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	3.33924566723391	3.27408633829185	3.50512297533826	3.06889928572072	3.44715520586458	3.26315526173433	3.38382502723601	3.73792185371258	0.613045517889951	0.257071469146916	0.568810942638566
Merged-chr1-36598524-2	chr1	36598410	36598610	+	707.5	f0_balb.idr|f0_c57.idr	intron (NM_001126046, intron 10 of 14)	intron (NM_001126046, intron 10 of 14)	-5178.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	3.58333816331817	3.50390511740082	3.68955333961365	3.56091608837877	3.86351182851815	3.64328794253541	3.7707194994101	3.46697702893564	0.369888870370855	0.439004960411551	0.726908939737358
Merged-chr15-88751498-4	chr15	88751394	88751594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181412)	promoter-TSS (NM_181412)	-217.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	8.00546301000619	8.18402245561387	8.18953815541048	8.24570829004568	8.53585179534709	8.42075621485619	8.431725754397	8.12190279145739	0.288102627257914	0.0857356940157822	0.318872450849062
Merged-chr5-93268989-4	chr5	93268897	93269097	+	992.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007635, intron 2 of 7)	intron (NM_007635, intron 2 of 7)	1424.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	6.04459974632278	6.74583981949888	6.18741585583808	5.45435106772664	6.09840217617074	6.34373971762191	6.03566557945245	5.58285919110436	-0.221991001803196	0.517335088450004	0.778803651723338
Merged-chr2-148580729-3	chr2	148580597	148580797	+	881.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91918.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	3.19513601981389	3.27232217043171	3.35698345037352	3.25454237283994	3.03449537002301	3.04933390810256	3.1837331023909	3.13508451407321	-0.676599160124462	0.221813943201509	0.529904167247531
Merged-chr7-27228621-4	chr7	27228537	27228737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181593)	promoter-TSS (NM_181593)	-40.0	NM_181593	233011.0	Mm.30963	NM_181593	ENSMUSG00000003752	Itpkc	9130023N17Rik	inositol 1,4,5-trisphosphate 3-kinase C	protein-coding	8.52790240647291	8.81230396777792	8.56279523056761	8.28088011940051	8.75625174616729	8.71680766161304	8.60114964477019	8.42794951398	0.09800673555653	0.581055590642523	0.816097731204617
Merged-chr8-79491515-4	chr8	79491425	79491625	+	883.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92057.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	4.22367820172898	4.72708576463018	4.76721446348871	4.6693088980857	4.29886080047685	4.45323406882299	4.60155615588814	4.58162220353089	-0.302672313175209	0.425866248618404	0.717223493053412
Merged-chr6-67376237-4	chr6	67376142	67376342	+	949.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008354)	promoter-TSS (NM_008354)	-54.0	NM_008354	16162.0	Mm.188337	NM_008354	ENSMUSG00000018341	Il12rb2	A930027I18Rik|IL-12RB2|Ifnm	interleukin 12 receptor, beta 2	protein-coding	5.87840735574087	5.85504175229616	6.28397778586538	6.42180926186543	5.18546119386154	4.97790232992603	5.18365410287679	5.31080492177706	-1.65295976435987	3.25681390797827e-08	1.55686203597035e-06
Merged-chr11-116005112-4	chr11	116005011	116005211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005608, intron 32 of 39)	CpG	7608.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	6.89759412444618	7.11049730359919	6.74482211504055	6.75804409823141	6.8375809288365	6.8917077691528	6.98859735749303	6.7400297375745	-0.0221054500747622	0.913984625275016	0.967814811699648
Merged-chr12-59129769-3	chr12	59129676	59129876	+	981.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165254)	promoter-TSS (NM_001165254)	28.0	NM_001165254	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	4.24773574494847	4.41649615525272	3.92234872070714	4.15341174815319	3.72256639739181	3.74748272061403	3.90638089270283	4.32513578131532	-0.667489386480718	0.150940744856413	0.433957209173573
Merged-chr5-143602290-4	chr5	143602191	143602391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20156.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	5.43951104174206	5.68885389990139	6.05560174366552	6.12471251002814	6.15809572571696	5.91048126786693	5.78009867300259	6.23930435368453	0.265369202182775	0.355102239534876	0.661757358498571
Merged-chr4-122884198-4	chr4	122884108	122884308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007598, intron 1 of 12)	intron (NM_007598, intron 1 of 12)	1868.0	NM_001358035	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	5.11134434481533	5.29564698953755	5.18116945349376	5.20228009155523	5.46013395456455	5.57028037370076	5.73332410016218	5.10874313851131	0.509660924306172	0.0871585135575785	0.321966452605956
Merged-chr11-97996007-4	chr11	97995891	97996091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152188, exon 1 of 6)	non-coding (NR_152188, exon 1 of 6)	182.0	NM_207231	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	6.36677814944298	7.41763354003887	5.85945999826545	5.53664146683073	7.41779623420251	7.26848494514832	6.77981529031668	6.06351003257884	0.639540993099491	0.359043819080339	0.664979073847202
Merged-chr17-33563932-4	chr17	33563850	33564050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053214, intron 1 of 27)	L3b|LINE|CR1	8243.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	6.4750693907489	6.74470978504053	6.72847663990551	6.75603420287308	6.44709689651818	6.68726190994043	6.55921916322231	6.65020722305446	-0.152670363549031	0.465840202103445	0.74623053314012
Merged-chr11-83302690-4	chr11	83302556	83302756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001035854)	promoter-TSS (NM_001035854)	-41.0	NM_027915	71770.0	Mm.39053	NM_027915	ENSMUSG00000035152	Ap2b1	1300012O03Rik|AI788979|AP105B	adaptor-related protein complex 2, beta 1 subunit	protein-coding	6.35498500529279	6.76909430450234	6.12067850641618	5.7228288361147	6.57764098517278	6.47758368162377	6.4094813378229	6.17932991697944	0.196197126295317	0.50057894854643	0.768850577358824
Merged-chr13-97544456-4	chr13	97544353	97544553	+	873.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15547.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	4.43889221129896	4.56409681872741	4.52326900411816	4.8108730808877	4.25558491588304	4.47906052070522	4.28447500778743	4.67257878254078	-0.40787684272422	0.286838488297771	0.598489674577799
Merged-chr5-75933624-4	chr5	75933517	75933717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010612, exon 30 of 30)	3' UTR (NM_010612, exon 30 of 30)	44811.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	7.36219521468658	7.6019731570328	7.53209561941311	7.83210346816561	6.87999254032758	7.01424885989946	7.1325262748069	7.368323534554	-0.669321841582015	0.00120320272152746	0.0155969343499551
Merged-chr2-137608736-3	chr2	137608628	137608828	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-492208.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	3.29707240703638	3.29108693456618	3.72015131820601	4.22241470376209	2.97116505882787	3.21035206490598	3.28546316670431	3.23210926835673	-1.87030605240842	0.00323438443037459	0.033855919024946
Merged-chr10-30810353-2	chr10	30810253	30810453	+	760.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7027.0	NM_001358842	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	2.98615294453598	3.11487613343411	3.2858590130103	3.04444540978148	3.20645152122888	3.34365049529386	3.10355515587952	3.17258117026753	0.38988642620888	0.480381520027702	0.755947743876719
Merged-chr19-9978584-4	chr19	9978476	9978676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2024.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	6.67562054238901	6.82072257974899	6.77946968405529	6.76535048355754	6.75987971704463	6.98246575848656	6.67288245143525	6.52717218093786	-0.0255993315269083	0.901463609500476	0.96338333180174
Merged-chr10-23840779-3	chr10	23840680	23840880	+	891.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10682.0	NM_011979	26464.0	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	3.61137218243301	3.43776151497172	3.67060107650021	4.31727433612293	4.01861183116217	3.78916492300795	3.91338189824018	3.97417911401222	0.276463896664107	0.607930284330379	0.830283203337722
Merged-chr17-50512411-4	chr17	50512300	50512500	+	882.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	2853.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	3.76896655488616	4.13906387999452	4.1001229297065	4.13628649922761	4.1951648145203	4.53222154611714	4.4195346620428	4.09767301155759	0.659094886431289	0.117613063869322	0.379328496151101
Merged-chr8-70755194-4	chr8	70755087	70755287	+	958.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166399, intron 1 of 4)	CpG	508.0	NM_001166399	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	5.2023385611841	5.09503824152525	5.01088901590307	5.36625239559296	4.86649683447667	4.74325970882438	4.916171175661	5.22896694325919	-0.459882046323048	0.158062348459814	0.444930535204605
Merged-chr1-161976604-4	chr1	161976500	161976700	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204904, intron 1 of 6)	intron (NM_001204904, intron 1 of 6)	3036.0	NM_001204904	75368.0	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	4.90119045051265	4.9644463691616	4.74133137131131	4.93080950115412	5.49028317257747	4.8782391635499	5.26340864297948	5.25817283937758	0.686167521227534	0.0329586019321966	0.178183223980846
Merged-chr9-85750009-2	chr9	85749909	85750109	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081282)	promoter-TSS (NM_001081282)	-675.0	NM_175371	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	3.62667040553542	4.11128053716716	4.14267900090712	3.8828474781124	3.72902514900171	4.13210494967577	3.89388508326995	4.14001911737643	0.0654844238323961	0.887169595873864	0.957666791297499
Merged-chr8-72836096-4	chr8	72835975	72836175	+	953.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317391, intron 13 of 15)	intron (NM_001317391, intron 13 of 15)	74416.0	NM_007975	14065.0	Mm.12948	NM_007975	ENSMUSG00000050147	F2rl3	PAR4	coagulation factor II (thrombin) receptor-like 3	protein-coding	4.85741125283039	4.80766604052549	4.7803519520066	5.14008623267852	4.98564282975776	4.83308647471614	5.37453511865114	4.96344916559107	0.259908381357085	0.44539479104927	0.731479858046592
Merged-chr13-51837522-4	chr13	51837414	51837614	+	961.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9161.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	4.89363808445675	4.83639429463767	5.40262035865429	5.22894884464488	4.76851940524361	4.87450970540976	4.63128743044116	5.09464194750554	-0.523007660313788	0.132465389646434	0.405338625615772
Merged-chr10-80928687-4	chr10	80928552	80928752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1439.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	6.78003125251019	6.96124448989401	6.8088956406469	5.95952650231228	6.93292350449987	6.90051564212046	6.62994545017382	6.68957479710258	0.181016035800984	0.508241694937926	0.773396125844835
Merged-chr12-69373146-3	chr12	69373142	69373342	+	898.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007481, exon 2 of 2)	exon (NM_007481, exon 2 of 2)	1092.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	3.49842197560908	3.57881708900841	3.66862006266339	3.55205986748147	3.87105948868456	3.73198321560318	3.97565279442319	3.55605291992433	0.677836490840216	0.148345611689925	0.430071295027352
Merged-chr15-58734337-4	chr15	58734249	58734449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89078.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	7.33578132807758	7.59847368618869	7.38727771932807	7.47427566351018	7.26525587097185	7.16265265434326	7.41748710653414	7.2027549744716	-0.255156777848105	0.159417908324621	0.446951602987166
Merged-chr3-35764846-4	chr3	35764750	35764950	+	927.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151627, intron 1 of 31)	intron (NR_151627, intron 1 of 31)	10787.0	NM_029570	76295.0	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	4.36310242948792	3.90723177571994	3.9470573794041	3.9983267743665	4.88060579186822	5.04238079158688	4.10098824978076	4.77775131088114	1.56951061278266	0.00029602918804788	0.00501691942287145
Merged-chr12-24708189-4	chr12	24708088	24708288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009104)	promoter-TSS (NM_009104)	-66.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	6.43466864342674	6.37292942273002	6.30749982244773	6.46223371531097	6.7279132935541	6.66282410078852	6.58114037212602	6.5157219675523	0.33220061731247	0.111157073111437	0.368344939804422
Merged-chr10-125270417-4	chr10	125270326	125270526	+	878.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 3 of 5)	intron (NM_001358496, intron 3 of 5)	38390.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	4.85273088628397	4.54148454019231	4.48089756428623	4.84432351948241	4.36470414810606	4.37291159670055	4.32535246669587	4.81759764387335	-0.475101606614116	0.215059582730186	0.521046864244511
Merged-chr15-93252598-3	chr15	93252480	93252680	+	874.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033275, intron 4 of 7)	intron (NM_001033275, intron 4 of 7)	22599.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	4.31330141475433	3.75949980112396	4.00907459991447	4.46372133781618	3.7399569128324	3.66252482691323	4.40324553537102	3.90455749515206	-0.549595049993723	0.278778376046391	0.591009603347969
Merged-chr4-132959027-2	chr4	132958927	132959127	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15068.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	3.19000838023228	3.45165450575769	3.69018888948298	3.15526137159696	3.3960857510082	3.49434707512428	3.47711211468517	3.59248922417825	0.373050612824271	0.484628019317857	0.758722925041806
Merged-chr9-121710286-4	chr9	121710184	121710384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026794)	promoter-TSS (NM_026794)	-105.0	NM_026794	26901.0	Mm.24848	NM_026794	ENSMUSG00000032526	Ss18l2	1110020I04Rik|AI463209|Deb1	SS18, nBAF chromatin remodeling complex subunit like 2	protein-coding	8.49970661328305	8.74457936838037	8.34957816223982	8.3344897082971	8.59490361842816	8.58168144148265	8.62704673482646	8.4402768358591	0.0916758035526591	0.580609717782757	0.815840553973051
Merged-chr2-84531835-3	chr2	84531736	84531936	+	999.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-24963.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	4.299631853541	4.08332743426901	4.11370240363546	4.32163870975129	4.68974328932233	4.23882649889384	4.32327409942927	4.11131096495435	0.380389314886706	0.356821147496016	0.66317411451208
Merged-chr8-105835521-4	chr8	105835421	105835621	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024445, intron 2 of 15)	intron (NM_024445, intron 2 of 15)	7777.0	NM_024445	72236.0	Mm.386810	NM_024445	ENSMUSG00000031893	Tsnaxip1	1700016K08Rik|TXI1	translin-associated factor X (Tsnax) interacting protein 1	protein-coding	6.01967152754097	6.07881541583575	5.44715403513433	5.80003269501331	5.8110710065179	6.06833758054564	5.388532537166	5.67315137150965	-0.165119850206558	0.574955113935458	0.81267584206704
Merged-chr4-119142396-4	chr4	119142294	119142494	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	31462.0	NM_001145935	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	5.13907465502828	5.1079877285979	4.91963437886908	4.93238998463003	5.38620809852236	5.38090647743165	5.75628240662729	5.35309158051489	0.833852302786531	0.00502750092310559	0.0477454954243807
Merged-chr3-144203416-3	chr3	144203315	144203515	+	676.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010723, intron 1 of 4)	intron (NM_010723, intron 1 of 4)	-1019.0	NM_001161769	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	3.55300962194836	3.37512035762414	3.60818248957203	3.29432340795985	4.02272699604594	3.48969140647086	3.69513055869213	3.70884530961493	0.952666410447343	0.0564389646736459	0.248780156746214
Merged-chr1-33503042-4	chr1	33502961	33503161	+	979.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008922, intron 10 of 13)	intron (NM_008922, intron 10 of 13)	166733.0	NM_008922	19076.0	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	5.42820858404377	5.38966222178014	5.4012570646206	5.42540628271009	5.47601309792451	5.14838044687424	5.25709066631451	5.21605159045537	-0.213044104968091	0.455102029021668	0.738746012503745
Merged-chr5-109551240-4	chr5	109551236	109551436	+	837.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7657.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	3.33966421761807	3.456338657102	3.58837696543309	3.31455615340685	3.70554096796825	4.10240753692773	3.62890660211581	4.01600484280036	1.39674063581088	0.00426329601550378	0.0421526805233426
Merged-chr1-171607353-4	chr1	171607255	171607455	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102726)	promoter-TSS (NR_102726)	-21.0	NR_102726	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	5.03683082651843	4.68366984148381	4.90164175353476	4.6522199123445	5.12705081888769	5.33053088985415	4.76661521619314	4.78600804817342	0.419122048905023	0.22713231029336	0.535811842189079
Merged-chr6-32544311-4	chr6	32544203	32544403	+	969.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	33162.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	4.73958512132606	4.76250024834618	5.13971495183525	5.18522023499151	4.48324213078048	4.70714842669058	4.79339014947606	4.73725003395498	-0.634528876053106	0.0722958842706911	0.288919698304616
Merged-chr17-48317299-3	chr17	48317186	48317386	+	869.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177083, intron 2 of 5)	URR1A|DNA|hAT-Charlie	1124.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	3.52337151200035	3.34589834621873	4.12744617436745	3.51050280602068	3.46391534677578	3.38039267917959	3.6747952878336	4.04864435497668	0.0270670654913045	0.961597429040333	0.98626123433568
Merged-chr13-118767745-3	chr13	118767639	118767839	+	729.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008002, intron 1 of 2)	intron (NM_008002, intron 1 of 2)	53040.0	NM_008002	14165.0	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding	4.05583482173016	3.94593318353146	4.01472649948057	4.53917183427452	3.2729606359244	3.26338708153667	3.2137952199877	3.22192005288606	-3.33721332030706	1.23187214869638e-07	5.1914403595062e-06
Merged-chr11-50377625-4	chr11	50377515	50377715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021510)	promoter-TSS (NM_021510)	-104.0	NM_021510	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	8.09815078132677	8.31161932477008	8.14272684460648	7.70390998522066	8.0392487169358	8.23230832862587	7.69141331426379	8.02961779215777	-0.0828394843196239	0.683844000386755	0.87046260876057
Merged-chr4-129672617-5	chr4	129672459	129672659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008468, intron 1 of 13)	CpG	208.0	NM_008468	16650.0	Mm.202358	NM_008468	ENSMUSG00000003731	Kpna6	IPOA7|Kpna5|NPI-2	karyopherin (importin) alpha 6	protein-coding	5.55086048389387	5.48374362402947	6.02762585640401	5.48785096535225	5.72603810237297	5.38671426163193	5.46800782827212	5.79687041894347	-0.059189201843245	0.84024907976375	0.939246943014465
Merged-chr3-96251332-4	chr3	96251251	96251451	+	950.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4651.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	5.16246594568157	4.70570705539391	5.22454490885572	5.6703184967422	4.80468468459897	4.89942394012326	5.04090279325853	5.25038634595682	-0.467688932544699	0.205052612436596	0.508640526245844
Merged-chr8-82773731-3	chr8	82773629	82773829	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145600, intron 1 of 9)	intron (NM_145600, intron 1 of 9)	397.0	NM_145600	30932.0	Mm.269248	NM_145600	ENSMUSG00000031711	Zfp330	BC008086|Noa36|Znf330	zinc finger protein 330	protein-coding	5.14767177611568	4.9399783754911	4.74201539712968	4.68713369556541	4.98315632627526	4.79331437653505	5.00324560882844	4.85345307597632	0.0749098727551669	0.823171173766021	0.932185203682946
Merged-chr8-69184287-4	chr8	69184186	69184386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24760.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	6.42997714624088	6.29948672246729	6.56589787488321	7.07830281324208	6.41473298494729	6.24249829238875	6.84071056448265	6.51236748260556	-0.182544702135882	0.500843326367146	0.769017904448726
Merged-chr7-107519563-4	chr7	107519451	107519651	+	747.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021889, intron 6 of 6)	intron (NM_021889, intron 6 of 6)	-47882.0	NM_172907	244198.0	Mm.77425	NM_172907	ENSMUSG00000051041	Olfml1	6720478C22|AV321997|BC047207|MVAL564|ONT2|mONT2	olfactomedin-like 1	protein-coding	4.09560331940445	3.88961835705238	4.18685039410058	4.63144010800422	4.0297287947602	3.77374598020792	3.8226583556352	4.30885607521527	-0.625080792113808	0.193342382204259	0.493529716199714
Merged-chr14-62243424-4	chr14	62243342	62243542	+	874.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49537.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	4.50946382727923	4.61082986619943	4.76661410098007	4.59246479042935	4.31664040262425	4.02546831135828	4.60456930805262	4.4234458825396	-0.596694773865935	0.122167930692401	0.387340362528036
Merged-chr17-35969887-4	chr17	35969805	35970005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013854)	promoter-TSS (NM_013854)	-155.0	NM_013854	224742.0	Mm.329022	NM_013854	ENSMUSG00000038762	Abcf1	AU041969|Abc50|D17Wsu166e|GCN20	ATP-binding cassette, sub-family F (GCN20), member 1	protein-coding	8.55944245682524	8.88667291713549	8.38515457050442	8.19045128553316	8.5170365862471	8.64639749704517	8.40904232200485	8.47808062813455	-0.0165171811894565	0.93121676606432	0.97526935002018
Merged-chr11-85310793-4	chr11	85310697	85310897	+	979.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016910)	promoter-TSS (NM_016910)	-457.0	NM_016910	53892.0	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding	4.42453883995648	5.04387278089628	4.42521203469632	4.46159883808239	4.66811246465587	4.6025594343114	4.53664536080141	4.91655246526695	0.154815763015581	0.687952877218168	0.87257074872168
Merged-chr17-69182295-4	chr17	69182204	69182404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	22948.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	6.69168186341878	6.6036333183901	6.9058337557089	6.43915645755878	6.61451867237557	6.97924635732363	6.31130326041511	5.96411335977805	-0.205986812369652	0.452823968217335	0.73705030775748
Merged-chr7-99190070-3	chr7	99189981	99190181	+	939.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7368.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	4.79596144912173	4.51624017364584	4.4596957609126	4.61479610054013	4.01671246894778	3.94620229945881	3.80809079889905	3.93994212061009	-1.70412487690083	5.59907527946861e-05	0.00124737583510891
Merged-chr7-97400451-2	chr7	97400351	97400551	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024220, intron 1 of 2)	intron (NM_024220, intron 1 of 2)	448.0	NM_024220	68197.0	Mm.334031	NM_024220	ENSMUSG00000030647	Ndufc2	1810004I06Rik|2010300P09Rik|G1|R75094	NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2	protein-coding	3.37551266565589	3.7288398298374	3.11283473491678	2.89577518225881	3.39339182816425	3.55273450579475	3.62905654579225	3.73682710407602	0.884294032814083	0.134676207213996	0.408510941501962
Merged-chr4-136035268-4	chr4	136035193	136035393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-13644.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	6.35844429858679	6.50759326154639	6.10361806005672	6.45695052796375	6.51086111813086	6.28086171874639	6.1564220690867	6.31889222116844	-0.0641481154456279	0.782647339014966	0.91529005173258
Merged-chr17-31060823-4	chr17	31060713	31060913	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 1 of 14)	intron (NM_009593, intron 1 of 14)	3119.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	5.99095673652825	5.98191713339248	5.86358946830484	6.05679812370762	5.77051203322307	5.58664349786059	5.34827386521786	5.52634555828004	-0.66192645059371	0.0117522685758523	0.0885395888590215
Merged-chr10-99263929-3	chr10	99263884	99264084	+	995.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026268, exon 1 of 3)	exon (NM_026268, exon 1 of 3)	753.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	4.71948931399906	4.41187604093739	4.21330768337179	4.77176199122197	4.58982428300379	4.53485431451188	4.42930499479856	4.48884514869729	-0.109123058102035	0.775973727134136	0.912625930233814
Merged-chr4-49597374-6	chr4	49597224	49597424	+	923.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_149725, exon 1 of 3)	non-coding (NR_149725, exon 1 of 3)	146.0	NR_149725	67063.0	Mm.454013	NM_025944	ENSMUSG00000039611	Tmem246	2810432L12Rik|9330170P15Rik|AI835809	transmembrane protein 246	protein-coding	4.11158585310216	3.72166421995063	4.46615856753213	4.0646652508235	3.95094793094279	3.98443430529412	4.04823615994717	4.01553407023587	-0.298115512956215	0.506901416188151	0.772597312449651
Merged-chr6-99522153-4	chr6	99522052	99522252	+	940.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-12329	-1159.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	4.36556116810165	3.92429040954072	4.67375162268922	4.43945007027554	4.55293854993244	4.25449865827416	4.34660143838869	4.48758995591011	0.101039928978985	0.806773385296562	0.925518505591432
Merged-chr8-40031539-4	chr8	40031468	40031668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	255385.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	6.09145043847213	5.68683946637262	6.14946296535895	6.37794715936348	5.43828448316013	5.59663829916124	5.78106805002156	5.80653982515077	-0.733893095855507	0.00919993972686407	0.0743378941785058
Merged-chr3-19163170-4	chr3	19163072	19163272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028840)	promoter-TSS (NM_028840)	-77.0	NM_001357689	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	8.83453561332585	8.91633919664487	8.79607368009053	9.10508611127513	8.62274318016805	8.74321547416409	8.80781021652263	8.6217695528057	-0.280758872142714	0.0685558955171616	0.279616363005337
Merged-chr4-156237161-3	chr4	156237080	156237280	+	897.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021303, intron 2 of 18)	CpG-10794	1170.0	NM_021303	57741.0	Mm.423051	NM_021303	ENSMUSG00000095567	Noc2l	AA410003|AF155546|NIR	NOC2 like nucleolar associated transcriptional repressor	protein-coding	3.14062354650257	3.43874618164081	3.43384403529194	3.57152977836193	3.18831893984755	3.43597351999596	3.25431774503397	3.37839260092451	-0.369247789672319	0.496266788690616	0.766231528607104
Merged-chr4-3080894-1	chr4	3080794	3080994	+	657.0	f1_balb.idr	Intergenic	Intergenic	-91189.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	3.01161948688868	2.92021872670467	2.94636174098152	3.20155247720798	3.07641224113038	3.12120990861226	3.12236616120369	3.44055942946981	0.624649223076574	0.288341792760949	0.600376446715098
Merged-chr19-40679177-4	chr19	40679081	40679281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	HAL1|LINE|L1	19411.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	7.25985737707312	7.04439170768986	7.75846204926134	7.70453297663866	7.19400893416742	6.80229068590822	7.74947171344953	7.2776508937826	-0.238313797423903	0.361813846264673	0.667103944133484
Merged-chr13-60613791-3	chr13	60613686	60613886	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	11575.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	3.8502821330439	3.6890802582618	3.66066340457679	3.88792564669043	3.37524441152614	3.20557187953233	3.23160198410893	3.84842651798785	-1.08721009667138	0.0488073549253845	0.22834767915668
Merged-chr1-132011010-5	chr1	132010873	132011073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007923, intron 1 of 4)	L1MB8|LINE|L1	3368.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	5.30602349441998	4.88326890873249	4.45883913717703	5.19463054129297	4.7207723701607	4.6395126757095	4.28874902242594	4.75518805410593	-0.80410639363725	0.0409227950322662	0.204544345172846
Merged-chr17-74802922-3	chr17	74802828	74803028	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152817, intron 13 of 19)	L1MB2|LINE|L1	85178.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	3.94437506425464	3.97646320905859	4.16449803139728	2.76867248632251	6.65531283784686	6.64435107651758	6.25949210871518	6.65657855454389	6.68110222516396	7.86033337623919e-43	3.72993779591553e-39
Merged-chr5-7994225-4	chr5	7994117	7994317	+	946.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	33745.0	NM_054098	117167.0	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	4.42847077478727	4.7123396238026	4.56474173181288	4.87073510460663	4.81776619830184	4.73975832533118	4.74073241994099	4.8990467947856	0.264833929648286	0.450897796514927	0.735619947634903
Merged-chr1-161728784-4	chr1	161728681	161728881	+	917.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59714.0	NM_001205243	14103.0	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	4.40351544698465	4.09035848624508	4.49229343686638	4.13533540009543	5.10729096105571	4.39061675729341	4.98422951112302	4.57175950001113	1.16425043124861	0.00339588041729774	0.0351944339287763
Merged-chr2-75964645-4	chr2	75964545	75964745	+	959.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13534.0	NM_001081228	620631.0	Mm.389286	NM_001081228	ENSMUSG00000075272	Ttc30a2	-	tetratricopeptide repeat domain 30A2	protein-coding	4.3605636273361	4.26595019957439	4.75776842735384	4.57232590452477	4.76661553302029	4.11447654377838	4.66531506119341	4.68464097798126	0.188310433707658	0.638023884719241	0.847040716325261
Merged-chr11-118470432-4	chr11	118470316	118470516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6416.0	NM_172573	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	5.93449427684566	5.52889849069376	6.07322543669886	6.22542971373745	5.22216337882863	5.30153238540299	5.60243590315727	5.51650870806021	-0.940913197120808	0.00150322106476711	0.0187059042253599
Merged-chr14-44835287-4	chr14	44835181	44835381	+	846.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24094.0	NM_008962	19214.0	Mm.5105	NM_008962	ENSMUSG00000071489	Ptgdr	DP|PGD	prostaglandin D receptor	protein-coding	4.54438873561168	4.4671095627757	4.62884799336884	5.28288908536033	4.7847160846602	4.84205806797275	4.29082495642943	4.66571214018336	-0.278264638172436	0.507180979347032	0.772710503440438
Merged-chr1-135531908-2	chr1	135531808	135532008	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 3 of 28)	intron (NM_173437, intron 3 of 28)	53447.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	3.30864486845927	3.41242836258718	3.46677195287643	3.0233932733168	3.27879239942094	3.10431414243133	3.11895700750614	3.36193679997005	-0.304509470225494	0.592247891361114	0.822019239498327
Merged-chr19-55469361-3	chr19	55469272	55469472	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 6 of 8)	intron (NM_001360431, intron 6 of 8)	153315.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	6.08158657356376	5.8611806063832	6.14502535356814	6.13886387844243	3.52490946274535	3.93672412561391	3.85397925275093	3.94356831570005	-7.34389799167375	1.88560577700737e-14	2.80771558799834e-12
Merged-chr8-109682317-4	chr8	109682223	109682423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155034, intron 3 of 10)	intron (NR_155034, intron 3 of 10)	10971.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	6.40053762012878	6.50075878236376	6.74010762751776	6.50294748430216	6.81088733982065	6.71794191052841	6.67734402712316	6.63236452315225	0.255520930083564	0.217867674118309	0.524774226796626
Merged-chr12-79137100-3	chr12	79136993	79137193	+	932.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	L2b|LINE|L2	6305.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	3.67985156155057	3.72868940409713	3.88273772104581	4.23899491895956	3.86019350098585	3.62023203282735	3.4928898005031	3.67835678128722	-0.708934855387309	0.159809208450285	0.447537461080491
Merged-chr17-23592753-4	chr17	23592653	23592853	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011747, intron 1 of 5)	CpG	-6501.0	NM_001356268	22654.0	Mm.40326	NM_011747	ENSMUSG00000062012	Zfp13	AI835008|Krox-8|Zfp-13	zinc finger protein 13	protein-coding	5.34469828795362	5.2509189389075	4.940403273978	5.30241417170135	5.46434174381242	5.19514399875187	5.52977840498861	5.252079750927	0.265647431425324	0.373564841863757	0.677113210162732
Merged-chr18-60523481-4	chr18	60523386	60523586	+	954.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2668.0	NM_026302	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	6.49555973643147	6.20706081271018	6.39626379164019	6.5769943635781	4.9784919427437	4.84216940944863	5.08847581207717	5.02745400107498	-2.46031986503685	7.66458003101246e-18	1.92776375274712e-15
Merged-chr11-50915832-3	chr11	50915726	50915926	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294323, intron 1 of 5)	CpG	350.0	NM_178447	22678.0	Mm.259230	NM_009550	ENSMUSG00000049321	Zfp2	9930007F06Rik|Fnp-2|Zfp-2|mKR2|mkr-2|mszf87	zinc finger protein 2	protein-coding	4.4451810473264	4.17961701113803	4.77769054202205	4.48425215806203	4.22184273097972	4.39380056368296	4.29386532733272	4.74163273051274	-0.141745486137906	0.725423226101249	0.890917401015595
Merged-chr8-70645411-4	chr8	70645307	70645507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12951.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	5.67297573858885	6.12387945441696	6.37652346130697	6.58526218804861	6.87307801705598	6.5173381432056	6.97384840639492	7.2860414051629	0.995821293480049	0.000507658304209679	0.00780613748873207
Merged-chr3-54360298-4	chr3	54360157	54360357	+	781.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198766)	promoter-TSS (NM_001198766)	-850.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	2.65963638632054	2.52635901488755	2.9241178511505	2.76229359175404	2.6603890544055	3.03516628271157	3.07856506557554	3.03684569007996	1.03675188537838	0.116008452117382	0.376807776456289
Merged-chr7-4150968-4	chr7	4150882	4151082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021454)	TTS (NM_021454)	-1110.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	5.5667513706064	5.25903967540731	5.28975474368703	5.07217651776542	5.30837554751138	5.26641788891899	5.61160437371388	5.48671681284885	0.2348873423159	0.432639360285607	0.722596762180336
Merged-chr15-39945183-4	chr15	39945081	39945281	+	973.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1187.0	NM_172814	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	4.8174751681603	5.2922326885378	5.16633940861206	5.22181070679787	4.93362573028203	4.99508618656037	4.79585259168577	5.10044089590319	-0.360554712749008	0.262307010185862	0.574184293693129
Merged-chr4-102290453-3	chr4	102290367	102290567	+	804.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177983, intron 1 of 5)	intron (NM_001177983, intron 1 of 5)	35528.0	NM_019840	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	3.45737692551285	3.33517605458396	3.51185274046718	3.72397933674638	3.38654573992596	3.11049332757903	3.49777727929959	3.65906936326591	-0.3179773709477	0.56069478760426	0.804677354323761
Merged-chr6-33263212-4	chr6	33263104	33263304	+	912.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347089, intron 1 of 9)	B1F|SINE|Alu	14076.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	4.43580479097639	4.60381526645422	4.13525609198826	4.45512920869227	4.82626820874575	4.6972639774819	4.50265348903198	4.94425791090797	0.720608397520711	0.0519009317979949	0.237100085004138
Merged-chr11-63906724-4	chr11	63906675	63906875	+	920.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018805, intron 1 of 1)	intron (NM_018805, intron 1 of 1)	15509.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	4.4294640707553	4.31730048695534	4.2970432441772	4.23250677219231	4.30522261286448	4.47224787728089	4.45095248460756	4.82153503186362	0.479460277717937	0.20866525573391	0.513007192521551
Merged-chr8-46953617-3	chr8	46953517	46953717	+	876.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33270.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	3.45241365313644	3.42305104069043	3.33628523519295	3.46117917844515	3.55214797239071	3.87003392636676	3.19838413242168	3.33462408734802	0.304674750588508	0.568831289488009	0.809077558202186
Merged-chr17-87303700-4	chr17	87303592	87303792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	20806.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	6.06530865696959	6.15658083926914	5.97877619887653	6.00123222079446	6.20569845887974	6.3612474242662	5.90293188677703	6.25771492346223	0.218850840027477	0.357250673305396	0.663450889042078
Merged-chr17-48410556-2	chr17	48410456	48410656	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010913)	promoter-TSS (NM_010913)	106.0	NM_001357904	106821.0	Mm.203943	NM_207219	ENSMUSG00000040771	Oard1	AI314976|AW558560	O-acyl-ADP-ribose deacylase 1	protein-coding	3.88466552541533	3.85730760128085	3.73057186512144	3.79248179768056	3.75142347161586	3.9556631488747	3.96126069202292	3.83344737620008	0.164439498688654	0.707682707519772	0.882529695648857
Merged-chr13-92530778-4	chr13	92530636	92530836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173392)	promoter-TSS (NM_173392)	74.0	NM_173392	218441.0	Mm.259585	NM_173392	ENSMUSG00000021706	Zfyve16	AI035632|B130024H06Rik|B130031L15|mKIAA0305	zinc finger, FYVE domain containing 16	protein-coding	7.58822709169992	7.52404901230668	8.05724270436599	7.46220273625016	7.58198636633617	8.02619989005407	7.73561637929026	7.96205310208647	0.209894372647219	0.316351922280856	0.628316688320471
Merged-chr11-98783490-4	chr11	98783421	98783621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8144.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	8.05121297952426	7.96985668912827	8.09670923412148	7.97817146524194	7.91100747372415	7.94245057849376	7.8426582776152	7.7101851776593	-0.214748201898037	0.180799099705267	0.477198869694498
Merged-chr18-44759843-4	chr18	44759733	44759933	+	947.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085373, intron 1 of 18)	intron (NM_001085373, intron 1 of 18)	52349.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	5.78586691583927	5.44934979780349	5.44162861515216	6.04193904732855	5.43488570531525	5.22695211020452	5.09608399587368	4.96332111299836	-0.907179375850297	0.00481214756336295	0.0462045624376078
Merged-chr5-139377658-4	chr5	139377549	139377749	+	890.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033147)	promoter-TSS (NR_033147)	-48.0	NM_001362206	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	4.17347251041329	3.9193983974096	4.57340414606596	4.67035542185714	4.07386434740595	4.03904609610436	4.0086993215874	4.26200271763513	-0.698406977281754	0.118842330431147	0.3813389862111
Merged-chr8-125587229-3	chr8	125587124	125587324	+	939.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015535, intron 2 of 2)	MTE2b|LTR|ERVL-MaLR	2586.0	NR_015535	75930.0	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	3.2609486217192	3.18523616318154	3.31338480345871	3.38573755001396	2.955529324209	2.92956053114672	3.01923365424407	2.96276860118614	-1.36478133968936	0.0202773388021686	0.129238101158064
Merged-chr4-4793326-4	chr4	4793205	4793405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177730)	promoter-TSS (NM_177730)	1.0	NM_177730	242291.0	Mm.218889	NM_177730	ENSMUSG00000066324	Impad1	1110001C20Rik|AA408880|AI451589|AL022796|B230207P20|Jaws|gPAPP	inositol monophosphatase domain containing 1	protein-coding	7.34107238736236	7.58051316949197	7.79207685481711	7.32828727156683	7.31713554078155	7.45574462811547	7.6002184711922	7.21720236606621	-0.152822333763256	0.446536220831612	0.732181563293557
Merged-chr7-42980314-4	chr7	42980201	42980401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-38497.0	NM_001105061	668612.0	Mm.469896	NM_001105061	ENSMUSG00000091528	Gm9268	EG668612|Vmn2r64	predicted gene 9268	protein-coding	6.15960171000423	6.37172724922569	6.31056435571644	6.14030557714893	5.8316595759139	6.41267155872542	5.91391196193092	6.05272922813502	-0.283437933311766	0.259196909247779	0.57102902607161
Merged-chr6-134319742-3	chr6	134319642	134319842	+	974.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153848, intron 4 of 8)	MLT1B|LTR|ERVL-MaLR	-76587.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	4.29051179293714	4.17846650282897	5.25141740345398	5.09612715765592	3.61333399534721	3.58617837675164	3.66675597439279	3.74618806826404	-3.09112072868032	2.19071449392491e-08	1.08739795650684e-06
Merged-chr13-64100421-3	chr13	64100327	64100527	+	721.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001321, intron 9 of 11)	intron (NM_001001321, intron 9 of 11)	-11226.0	NM_008291	15487.0	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	3.47226698175234	3.46944280599963	3.40810739060933	3.94585258890111	3.90330785445236	3.76765659663915	3.92656914205297	3.94192280469024	0.79172864766489	0.126473069418771	0.395335803610371
Merged-chr18-82878061-3	chr18	82877958	82878158	+	776.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22161.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	3.81306755594828	3.48297859615847	3.44677148059836	3.6323748977369	3.41780803519163	3.73454584347068	3.60238308632799	3.71689587906967	0.0474922586529871	0.923189430944333	0.9715635470568
Merged-chr7-105399160-4	chr7	105399067	105399267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242363, intron 1 of 12)	intron (NM_001242363, intron 1 of 12)	887.0	NM_001242364	74349.0	Mm.30254	NM_199009	ENSMUSG00000044465	Fam160a2	4632419K20Rik|6530415H11Rik|FHIP	family with sequence similarity 160, member A2	protein-coding	7.33260257672386	7.36428767935256	7.39438210239097	7.55349246747885	7.56449664383683	7.31008254157926	7.12071522069302	7.41843591921006	-0.0674383373199079	0.723331082230844	0.889560508347027
Merged-chr19-34526383-4	chr19	34526328	34526528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021460, intron 1 of 9)	intron (NM_021460, intron 1 of 9)	1046.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	6.23858896016022	5.80117706974645	5.98294071372786	6.0502531926639	6.12605167837163	5.89253220472778	5.88530285031598	6.10398886108186	-0.0199931715335342	0.935618796841589	0.976639892179174
Merged-chr16-85138741-3	chr16	85138638	85138838	+	913.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	34969.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	4.19146784279761	4.32119623012859	4.74805588026575	4.53915909688218	3.38459087607183	3.64919122652736	3.64829972115471	3.72311188326941	-2.57716870830706	3.23691969006797e-07	1.24540922496945e-05
Merged-chr15-83171893-4	chr15	83171802	83172002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 1 of 8)	CpG	306.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	7.34614223383334	7.46703901963673	7.22962347649886	7.19861567341547	7.62208976102432	7.58398494066003	7.41841200587246	7.29009857698143	0.240178570142445	0.196938793280124	0.498219589383209
Merged-chr4-8536161-4	chr4	8536078	8536278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021518, intron 1 of 7)	CpG	534.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	5.7903199334363	6.26141895108271	6.26058519309877	6.25377260559127	6.42801785664409	6.29865088864398	6.09130146969281	6.31086245759864	0.19344098434239	0.426062757623144	0.717486538867649
Merged-chr13-94468201-2	chr13	94468101	94468301	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009680, intron 15 of 26)	ID4|SINE|ID	109241.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	3.35594903910673	3.07854930546435	3.05423750913093	3.07305966456223	3.2094784841153	3.47154866560752	3.28827480330208	3.4578735068221	0.801685388703852	0.138879803704567	0.414444304372269
Merged-chr7-104366516-4	chr7	104366426	104366626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7880.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	6.20442234571798	6.12850799194044	5.95029793561233	6.51787180480254	6.15964930432851	6.12742233607368	6.28367329763576	5.94607060169694	-0.154813343291226	0.541486959030681	0.793272720948538
Merged-chr6-15793727-4	chr6	15793593	15793793	+	943.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 4 of 4)	intron (NM_175088, intron 4 of 4)	73032.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	4.48695995883594	4.45471524241914	4.48764892982853	4.9096338032069	4.97475334020871	4.78774236663082	4.51103945861667	4.68999214857823	0.291634176995337	0.44148022545751	0.72851318019698
Merged-chr2-167777690-8	chr2	167777537	167777737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	86460.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	7.99706430352807	8.34819752270163	8.07714804329092	7.37081244011105	8.01569102178625	8.44894943114106	7.85431880874561	7.79533223745499	0.0818604487911325	0.739366770165287	0.897284218525646
Merged-chr8-19161737-4	chr8	19161634	19161834	+	972.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3847.0	NM_153115	78128.0	Mm.229357	NM_153115	ENSMUSG00000079842	Spag11a	9230111C08Rik|Bin1b|EP2Q|EP2e|Spag11	sperm associated antigen 11A	protein-coding	5.01480859185882	4.98509508558778	5.1107196694412	4.96056303357766	4.81133436642373	4.97618316442415	5.05480315284728	4.54070610328304	-0.312328476596332	0.344019377135013	0.652570542833357
Merged-chr11-101972292-4	chr11	101972206	101972406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028207, exon 3 of 3)	3' UTR (NM_028207, exon 3 of 3)	-5291.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	6.8231916822536	6.81380343967863	6.53386858191128	6.49153984648587	6.66946567154113	7.21268045143856	6.67591540267279	6.84653393681881	0.277953325489515	0.225736602558313	0.534241429840117
Merged-chr12-70825376-4	chr12	70825220	70825420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028127)	promoter-TSS (NM_028127)	-194.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	7.82608215106779	7.81826848377471	7.87247014672288	7.71021603583846	8.0401650549933	7.84187520882361	8.3166042093283	7.79894112301377	0.277571887377674	0.12860852995522	0.399048782433028
Merged-chr4-127015768-4	chr4	127015678	127015878	+	971.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5523.0	NR_045010	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	5.38415501076625	5.07348306523786	4.52389033856336	4.7802650157339	6.00854734910997	5.83175603786924	5.86944329372064	6.01121311566279	1.67882123492599	6.93954814300843e-08	3.0746949686599e-06
Merged-chr12-80643832-4	chr12	80643739	80643939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026244)	promoter-TSS (NM_026244)	272.0	NM_007951	13877.0	Mm.246551	NM_007951	ENSMUSG00000021131	Erh	Mer|Prei1	ERH mRNA splicing and mitosis factor	protein-coding	6.46717595592475	6.17686602549259	5.90460655915847	6.24867189002033	6.58404741572776	6.31266995496035	6.43520138116796	6.32670165021378	0.314150643019863	0.184058545776834	0.481268945332791
Merged-chr11-115322544-4	chr11	115322497	115322697	+	828.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362400)	promoter-TSS (NM_001362400)	67.0	NM_001362400	237987.0	Mm.44542	NM_172801	ENSMUSG00000050201	Otop2	4732464P15	otopetrin 2	protein-coding	3.10413637886423	3.18546363546949	3.16192788948795	2.78133534874128	3.17092888399233	2.87991491239588	3.03363121890528	3.21499112014342	0.0989896341372305	0.870036288862877	0.951192102186753
Merged-chr11-83686468-4	chr11	83686367	83686567	+	850.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-17589.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	3.82447023441948	4.17970423973756	4.33211020137248	3.93383185261685	4.06479692293774	3.94419900765894	4.01615090577658	4.25176230354061	-0.00111309353898037	0.997955814727926	0.999078706261959
Merged-chr16-94569513-4	chr16	94569405	94569605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007890)	promoter-TSS (NM_007890)	-701.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	8.52354427185487	8.68678185317449	8.10091227030981	8.15558576124794	8.71123447129724	8.63382026302253	8.57771688301396	8.39876539562474	0.2511218806376	0.186059099358709	0.483993006368217
Merged-chr11-6524605-4	chr11	6524502	6524702	+	860.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045893)	TTS (NR_045893)	-3644.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	4.22721853438395	4.04513564579022	3.86245574563102	3.90109230737262	3.70257989270979	3.87252632036662	3.99462368281031	4.10030004478423	-0.25049003322225	0.574244248182282	0.812171028302236
Merged-chr11-97840688-3	chr11	97840596	97840796	+	786.866699	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080935)	promoter-TSS (NM_001080935)	-84.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	3.1431620402362	3.1788868605008	2.9550868382069	2.83980296949467	3.41594959170521	3.13075550429137	3.13175202228339	3.14191794352909	0.749219952529237	0.194236741004392	0.494645726487711
Merged-chr9-121277305-2	chr9	121277205	121277405	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177589)	promoter-TSS (NM_177589)	-133.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	4.62051896656993	4.11615819293332	4.65714888079865	4.53423485703642	4.0944359978658	4.82622742215092	4.07122974333078	4.33437238606296	-0.312700606629061	0.473246063014147	0.751076459932416
Merged-chr19-5811301-5	chr19	5811295	5811495	+	717.450012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8723.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	3.06396630184281	2.96834356594129	3.30262956371422	3.19997609332047	2.90565000967813	3.1765434415112	3.11674694222137	3.67413735004275	0.402041449975969	0.511066115876505	0.775140082837974
Merged-chr15-90649534-3	chr15	90649434	90649634	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	29854.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	3.6251658365164	3.9189999011157	4.36090189065262	4.64757288842287	3.35324624357637	3.18235525331214	3.21524562639745	3.29842306943079	-3.18032552394678	1.12818602239289e-06	3.90924261274308e-05
Merged-chr2-166155249-2	chr2	166155149	166155349	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252578)	promoter-TSS (NM_001252578)	36.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	3.47705705521789	3.49112315821785	3.72720886505309	3.50845686717843	3.57380450501478	3.47548752587314	3.22570903501835	3.4193504686764	-0.389254736476679	0.448152476299702	0.733429404974054
Merged-chr9-89205595-4	chr9	89205498	89205698	+	880.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007534, intron 1 of 1)	intron (NM_007534, intron 1 of 1)	-5592.0	NM_026829	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	4.61385627038885	5.08284368999445	4.17938053911349	3.60674685566338	4.56274991086735	4.45773566511538	4.43645756905446	4.17685234561931	-0.168713127693657	0.742464194392011	0.898494026733066
Merged-chr4-135982207-4	chr4	135982082	135982282	+	888.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025411, intron 3 of 5)	L1MA5|LINE|L1	5062.0	NM_025411	66193.0	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	4.86483906196707	4.52353852971025	4.24174559092363	4.38585150020811	4.26962706194402	4.55909289121143	4.57004422063471	4.46847247370383	-0.116766559771223	0.764789522942708	0.907812114625849
Merged-chr17-33950808-2	chr17	33950716	33950916	+	621.5	f0_balb.idr|f0_c57.idr	exon (NM_019420, exon 1 of 1)	exon (NM_019420, exon 1 of 1)	672.0	NM_019420	54218.0	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	3.67611471027048	3.5304255547038	3.33760751488555	3.28514831762833	3.5006624468084	3.69148561696952	3.38820155249207	3.94172356844928	0.598412133231032	0.248682061565624	0.559908283044839
Merged-chr8-83699816-3	chr8	83699713	83699913	+	818.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177262)	promoter-TSS (NM_177262)	-634.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	3.56988668253775	3.19820101656945	3.26055466278645	3.06017053657729	3.40006057253571	3.18302679247904	3.35873603483875	3.13662936563804	0.010277094075022	0.98544010912745	0.994679311230532
Merged-chr17-15831989-4	chr17	15831885	15832085	+	892.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5399.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	4.55195501768451	4.5840833927329	4.24229913964658	4.40226729028995	4.86847370757064	4.64392593021102	4.12160027361158	4.4685031390312	0.255980151771798	0.523857376012415	0.782647016014066
Merged-chr2-27025752-4	chr2	27025651	27025851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177627, intron 3 of 8)	L2|LINE|L2	2247.0	NM_172659	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	6.28737634940907	6.43045543510264	5.66869120127557	5.47943166495892	6.17234723157765	6.07965354263842	6.12800453093241	6.07529251202795	0.149535031436468	0.623059568227509	0.838884054759699
Merged-chr1-165457635-4	chr1	165457529	165457729	+	676.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028759, intron 1 of 18)	intron (NM_028759, intron 1 of 18)	2834.0	NM_028759	74106.0	Mm.227605	NM_028759	ENSMUSG00000026571	Dcaf6	1200006M05Rik|Iqwd1|PC326	DDB1 and CUL4 associated factor 6	protein-coding	3.72819207330915	3.69614323950106	3.83886251303962	4.03355474436464	3.82797445240626	4.20343595612198	4.01678169189014	4.0766585957833	0.507740150732027	0.261759636477707	0.573709482844153
Merged-chr18-64847114-4	chr18	64846996	64847196	+	859.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40660.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	4.39822593886991	4.32855483113256	4.30892511320058	4.30840803743985	4.56407565361465	4.52862125027212	4.24321068184881	4.80100575605057	0.495680404773351	0.187136961996936	0.485386758118514
Merged-chr14-32785919-4	chr14	32785807	32786007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163616)	promoter-TSS (NM_001163616)	-56.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	6.92138918533507	6.72347628727957	6.74783809063896	7.044313041611	6.56280603456885	6.41914907784414	6.68443097664512	6.79942503687506	-0.35902210377746	0.0930081407322917	0.333663950868595
Merged-chr16-91740375-3	chr16	91740277	91740477	+	955.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	11006.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	3.7315056209295	3.35459873838081	3.30060942390219	3.9731208078297	3.16295503300688	3.41449611857889	3.35101959846086	3.63486835279431	-0.768174184816401	0.180604844069296	0.477039936025248
Merged-chr3-88618319-4	chr3	88618222	88618422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198911, intron 2 of 22)	intron (NM_001198911, intron 2 of 22)	2115.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	6.91508622607124	7.37120027548196	7.2018982306309	7.41117871679741	7.05984464771965	7.0940293052076	7.29204609677728	7.34336518803309	-0.0684133781931168	0.73773985681335	0.896476300861738
Merged-chr3-95142390-4	chr3	95142271	95142471	+	881.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027206)	promoter-TSS (NM_027206)	-11.0	NM_027206	69769.0	Mm.34368	NM_027206	ENSMUSG00000013707	Tnfaip8l2	1810019A08Rik|AW610835|TIPE2	tumor necrosis factor, alpha-induced protein 8-like 2	protein-coding	4.10416437605844	4.57301513780576	3.71022318112027	4.13566399020043	4.0800565133563	4.18008971036142	4.42425779053544	4.24080339963519	0.160440831730065	0.723608354863143	0.889701665039534
Merged-chr7-3303482-1	chr7	3303382	3303582	+	632.0	f0_c57.idr	promoter-TSS (NM_011102)	promoter-TSS (NM_011102)	-50.0	NM_001291434	18752.0	Mm.7980	NM_011102	ENSMUSG00000078816	Prkcg	PKCgamma|Pkcc|Prkcc	protein kinase C, gamma	protein-coding	3.54983304512466	3.37147088557573	3.6635272031411	3.38183728958529	3.96019197451714	3.98749164302573	3.34942897479853	4.112949638585	1.18783301049459	0.0202802588383396	0.129238101158064
Merged-chr5-8623086-4	chr5	8622970	8623170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198620)	promoter-TSS (NM_198620)	-118.0	NM_198620	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	5.90490511238851	6.00772182551353	6.60254737820232	6.5110138637051	5.58198740371415	5.30515070374492	5.41889218601706	5.62369951012683	-1.29805302233325	8.90017924324192e-06	0.000248238972709529
Merged-chr3-95106921-4	chr3	95106816	95107016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008847)	promoter-TSS (NM_008847)	14.0	NM_008847	18720.0	Mm.296409	NM_008847	ENSMUSG00000028126	Pip5k1a	PI4P5K-I[a]|PIP5K1-alpha|PIP5KIalpha|Pipk5a	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	protein-coding	7.17942905987965	7.31805975398953	7.18067270890132	6.96782246540811	7.21099811848517	6.99741185425992	7.30193612363749	7.24114380021258	0.0500280260527721	0.796192438745194	0.921052599307061
Merged-chr8-69920462-4	chr8	69920382	69920582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 3 of 12)	intron (NM_001286450, intron 3 of 12)	-17924.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	7.2586466257985	7.54231373167618	6.54709266248499	6.75371757427328	7.51950191766428	7.81219546130708	6.82626308398766	7.53140144376916	0.518107661653816	0.0720828836028036	0.288487332746785
Merged-chr11-53850112-4	chr11	53850013	53850213	+	905.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 1 of 3)	intron (NR_033332, intron 1 of 3)	9143.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	4.50283609188938	4.67230385958924	4.22415020590664	4.45560506373551	4.46000879089837	4.5010407918951	4.71013752340657	4.79771484070897	0.322252578170295	0.384054868030234	0.685644380524807
Merged-chr1-80475131-4	chr1	80475036	80475236	+	720.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040460, intron 2 of 2)	intron (NR_040460, intron 2 of 2)	29204.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	3.91624909068368	3.67183036593735	3.9167999934	4.40753830620275	4.02773137505662	3.8066613186459	4.09486218845766	4.53143008805972	0.305098185632987	0.542222929920156	0.793691778334718
Merged-chr15-88523630-4	chr15	88523530	88523730	+	855.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76672.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	4.03346610206722	3.95430760697143	3.59241527730107	4.20319454214297	4.02244567313443	3.77498821477929	4.14836744288759	4.24615672846605	0.217966479233159	0.642197893258446	0.849045843168691
Merged-chr9-124275208-4	chr9	124275098	124275298	+	878.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37496.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	5.12047129330072	5.18540270852915	4.38099692012352	4.64278001140352	5.5022201475982	5.66672734603805	4.99251512080186	5.63164180050304	1.11637457266972	0.00252905722882572	0.0280049415822318
Merged-chr3-68666599-4	chr3	68666480	68666680	+	840.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24064.0	NM_001159424	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	3.82889545280785	4.23277405735632	4.16011219076308	4.90571005533129	4.07716296594541	4.13014382917232	4.61954898621998	4.20547482878289	-0.203056156273957	0.683286196961766	0.870307072406269
Merged-chr19-6157381-4	chr19	6157273	6157473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7066.0	NM_001356604	74481.0	Mm.159219	NM_028967	ENSMUSG00000039699	Batf2	B-ATF-2	basic leucine zipper transcription factor, ATF-like 2	protein-coding	6.59395623031547	6.54393924494692	6.24690658466853	6.2098063126335	6.67952883389402	6.55621359041713	6.41720575536146	6.33884312134988	0.163980292478669	0.478161374673126	0.754278182620364
Merged-chr3-90072486-4	chr3	90072411	90072611	+	974.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293748)	promoter-TSS (NM_001293748)	-140.0	NM_001293748	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	4.90567393644886	5.30351118105753	5.43603016707256	5.51985101508737	5.19404010894266	5.16450243431668	5.35378386885834	5.51081546258564	-0.0289822717095126	0.926439595702346	0.972984389035578
Merged-chr16-78235917-4	chr16	78235814	78236014	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	19540.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	5.10057373860729	5.68145160452492	4.95483543326413	5.25962024337913	5.50540475721149	5.4968025536265	5.2071434434096	4.69621337976161	-0.0217471250537625	0.952262794209928	0.983110341498473
Merged-chr10-96373699-4	chr10	96373611	96373811	+	892.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	147504.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	4.42143105206217	4.40548517432021	4.24874781423863	4.67676652971502	4.21559725434173	4.37548888193795	4.18363809205693	4.15000891371001	-0.558926582663841	0.157389052092997	0.443921197453141
Merged-chr6-88045239-4	chr6	88045115	88045315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293652)	promoter-TSS (NM_001293652)	55.0	NM_001293652	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	6.93141919484578	7.33405157185357	6.8193993249275	6.88844059058453	7.35694893437609	7.37647731104376	7.20663410956762	7.08042021003665	0.34688213256179	0.0962553865492788	0.34001797316085
Merged-chr7-116530006-4	chr7	116529887	116530087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360375, intron 11 of 14)	ORR1B2|LTR|ERVL-MaLR	25618.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	6.41009863838794	6.31221923296677	6.25798012391655	6.68653344186478	6.44518695707456	6.77152729687869	7.0653201101544	6.38848177885951	0.364313678077244	0.152201008120361	0.436166984338479
Merged-chr6-146222195-4	chr6	146222094	146222294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	280029.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	6.76059886136644	7.12492130186974	7.37095203083378	7.59603540531628	6.89667561514924	6.43089414564322	6.84203270607935	6.81585190934626	-0.687139192500691	0.00523982658234124	0.0492039071641777
Merged-chr6-137386532-4	chr6	137386417	137386617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 7 of 26)	intron (NM_011216, intron 7 of 26)	-24204.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	6.74393350952677	6.79806050326036	6.99804027007792	7.25496096780315	7.2477737314193	7.01288397051634	7.44986712409843	7.11427428778518	0.327329513495533	0.135314932276251	0.409540843800121
Merged-chr2-128771245-4	chr2	128771151	128771351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-47052.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	5.43618746094937	5.51401152872797	6.02651687995501	5.75059091106828	5.4012820572831	5.28964392037658	5.04721992908988	5.40407276816678	-0.704233022337405	0.019323632038045	0.125005617089521
Merged-chr1-121464707-4	chr1	121464607	121464807	+	976.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029955, intron 11 of 23)	intron (NM_029955, intron 11 of 23)	33640.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	5.23662677764511	4.55006479280613	5.14010606617452	5.51914582203214	5.27695652284643	5.31608036714386	5.58443260081447	5.35303762279998	0.38316503729836	0.279420513648088	0.591495502480744
Merged-chr12-111376786-3	chr12	111376670	111376870	+	970.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183016, intron 1 of 36)	intron (NM_183016, intron 1 of 36)	948.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	4.16683715551205	3.91375331974943	4.25492500364666	4.05650354523842	4.25741637472604	3.86440676949984	4.05625515588067	4.48264139278004	0.231800579942464	0.590224904800809	0.820844033895718
Merged-chr8-84979914-4	chr8	84979842	84980042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1194.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	8.903252343685	9.06778418948516	9.30053448728814	8.98145992240057	9.03658588970259	9.07859934075091	9.22316224330054	8.97741503487672	0.0144347856588853	0.926639635538162	0.97306526146631
Merged-chr1-152838252-4	chr1	152838190	152838390	+	875.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001359257, exon 24 of 24)	3' UTR (NM_001359257, exon 24 of 24)	38137.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	4.00767162285617	3.44832707697918	3.68231830932184	3.74162826755461	3.60136117692135	3.56634523130614	3.86154156791865	3.68024571928161	-0.15675017444141	0.748576894218051	0.901016488594137
Merged-chr1-155322375-4	chr1	155322269	155322469	+	971.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 7 of 14)	intron (NM_011273, intron 7 of 14)	95075.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	4.38091308273308	4.23897204858854	4.65348414595808	4.63049513594759	4.34598621974587	4.10329069366482	4.55989023945953	4.33483522546932	-0.340338110916069	0.389376888168025	0.689702992001691
Merged-chr12-81889176-3	chr12	81889083	81889283	+	679.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 1 of 35)	L1MB2|LINE|L1	29153.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	3.4514471812942	3.17851751910918	3.30173096103027	3.25087574242498	3.16079511666215	2.96978001549077	2.9268204039672	3.18890878175399	-0.886435579581998	0.126524702549952	0.395411916175055
Merged-chr8-54507918-4	chr8	54507825	54508025	+	960.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22073.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	4.80674135425429	4.66824386011093	4.98909315929733	5.43653017731739	5.08428600927052	4.5321087112114	4.89591296532637	5.14431145534868	-0.172555570761792	0.653031803372603	0.854895588497363
Merged-chr7-141328108-4	chr7	141327999	141328199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282076)	promoter-TSS (NM_001282076)	-31.0	NM_001141950	71448.0	Mm.248960	NM_027797	ENSMUSG00000025505	Tmem80	5530601I19Rik	transmembrane protein 80	protein-coding	7.38056348080828	7.40552292780227	6.9876527180064	6.74403063536427	7.66395203951867	7.81030691774891	7.4944685874302	7.49068827357851	0.634169394452383	0.0041587863178816	0.0413433311900132
Merged-chr3-30599772-3	chr3	30599660	30599860	+	907.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029690, exon 1 of 2)	exon (NM_029690, exon 1 of 2)	110.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	3.6926387235942	3.41184725294833	3.48865722863115	3.58873671986362	3.31767067343473	3.42403066269414	3.36079024944679	3.73719011682542	-0.278285207780122	0.587845504964759	0.819376007478294
Merged-chr7-125581423-4	chr7	125581357	125581557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-21972.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	6.49092975201676	6.90467498746499	6.95210542827561	6.97712368352104	5.9326236712857	5.88688066631812	5.94360782936674	5.89427471135725	-1.40169985165579	1.98911134544005e-09	1.20804570355868e-07
Merged-chr18-61555185-4	chr18	61555093	61555293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146087)	promoter-TSS (NM_146087)	-80.0	NM_001357499	93687.0	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	8.20847964330923	8.36822239155246	7.95886230087314	8.12066831005316	8.49735320655608	8.49641667245849	8.35400884672612	8.21037492155009	0.284421539540837	0.0942529795838991	0.335878283458614
Merged-chr10-17579005-4	chr10	17578905	17579105	+	773.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144223.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	4.1972456400013	3.69677485557023	4.07539638843278	3.92213833072783	3.87930156297706	3.72630048122712	4.0572255579754	3.83469165189664	-0.27588836352382	0.544598745622466	0.795354633236109
Merged-chr10-120189430-3	chr10	120189313	120189513	+	683.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001359184, intron 1 of 11)	intron (NM_001359184, intron 1 of 11)	12184.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	3.22787524677041	3.34919943184934	3.2945400521054	3.12820230052224	3.81444085849797	3.53497110855472	3.75951045033736	3.7746059979177	1.63159837479093	0.000975076374678183	0.0131648257346772
Merged-chr3-127792840-4	chr3	127792747	127792947	+	986.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356430, intron 2 of 2)	intron (NM_001356430, intron 2 of 2)	2190.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	5.07561765002567	4.81642506117902	5.04478663566883	4.63599075537608	5.10434042462812	4.93386549507304	4.92075476607684	4.86989903085991	0.161901539983857	0.628175377740891	0.841427212108636
Merged-chr17-34317421-3	chr17	34317307	34317507	+	961.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010382)	TTS (NM_010382)	-8268.0	NM_001033978	381091.0	Mm.139204	NM_001033978	ENSMUSG00000067341	H2-Eb2	A130038H09Rik|H-2Eb2|Ia-5|Ia5|Iebeta2	histocompatibility 2, class II antigen E beta2	protein-coding	3.48387805016312	3.36492953426018	3.54517726231778	3.23595200687273	4.27269886819263	3.72420668007903	3.58895995163645	4.11183569857808	1.71441143733057	0.000649688388415252	0.00950743622512525
Merged-chr5-65960476-4	chr5	65960366	65960566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6658.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	5.35096507916278	5.35365815504347	5.2282516203728	5.50568870324845	5.36608887568332	5.37072408330584	5.17048026751127	5.53871257730894	-0.0154688841307008	0.957101236499567	0.984757116793997
Merged-chr3-9027521-4	chr3	9027423	9027623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22800.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	7.97757859833074	8.1781521467126	8.15832461282503	8.12686635625148	7.5185382958966	7.41699294277728	7.49926611091585	7.44289156607808	-0.837189967966193	3.05784871945233e-07	1.18419267683296e-05
Merged-chr19-5663737-4	chr19	5663644	5663844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164482)	promoter-TSS (NM_001164482)	-37.0	NM_001164480	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	6.92236826272191	6.89693260775748	6.62774089261158	6.5065036405741	6.87964735156896	6.63580006337724	6.90092918655503	6.55786996292002	0.0256534800880194	0.908300101219355	0.966035007914717
Merged-chr17-8842081-3	chr17	8841971	8842171	+	831.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	-7914.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	3.62347001659346	3.44303411308489	3.81959902718658	3.79407851262847	3.68510089466761	3.30148652186942	3.44253446364992	3.81722336886372	-0.31377770945662	0.544906382407276	0.795575389591555
Merged-chr12-98820793-4	chr12	98820709	98820909	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 28 of 43)	intron (NM_001081191, intron 28 of 43)	49787.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	5.40246121404433	5.36130359852553	5.5185765039565	5.67143074376448	5.68507019453684	5.27966821565475	5.80362547921856	5.59462842048036	0.177197523648425	0.533895535928048	0.789042708189764
Merged-chr11-40763606-4	chr11	40763504	40763704	+	794.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-8318.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	4.27508601187537	4.23938653857899	4.39618836043147	4.0218473972314	4.190022769661	3.94836738415141	4.25629878629524	3.99182444291987	-0.304442663718667	0.467332495959635	0.746968519290045
Merged-chr11-74832949-4	chr11	74832869	74833069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 1 of 5)	intron (NM_010813, intron 1 of 5)	2045.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	7.30604665888442	7.37000664122898	7.22299378714817	7.18191488983402	7.15467870633444	7.28579546600904	7.08511932520534	7.05539489523222	-0.164684814468575	0.367776152734233	0.672315247077843
Merged-chr11-55240781-4	chr11	55240690	55240890	+	924.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36450.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	4.67687894328848	4.80515766040605	4.7866344271417	4.66181147843039	4.53001361382598	4.40973960490179	4.61754899136379	4.59643425339962	-0.410644665163179	0.237380074478323	0.54758732450022
Merged-chr1-9597581-3	chr1	9597481	9597681	+	993.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015470, intron 3 of 4)	L1_Mus3|LINE|L1	-3686.0	NM_178399	76982.0	Mm.491098	NM_178399	ENSMUSG00000067879	3110035E14Rik	AI415019|AV164974|R75066	RIKEN cDNA 3110035E14 gene	protein-coding	4.60023129299135	4.32662408372858	4.60103148296195	4.4270598185664	3.95054527411776	3.58771996031919	3.85118101644204	3.80499856634543	-1.79988568522742	8.11894036716508e-05	0.0017032067680355
Merged-chr5-123903097-4	chr5	123903004	123903204	+	881.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4171.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	3.95878828530026	4.41325945159534	3.7959037764329	4.11936838357978	4.24195047459735	3.97126830772253	4.25980364977215	4.10393972787398	0.140900941102103	0.748029807010396	0.900798759417346
Merged-chr9-58256484-2	chr9	58256384	58256584	+	854.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028146, intron 3 of 7)	ORR1F|LTR|ERVL-MaLR	3320.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	3.00512898460035	2.79651846162967	3.00547481487323	3.08150332635757	3.22140540743364	3.11515260422696	3.11642735009491	3.43606027692553	0.96413854604196	0.0978754882537672	0.342814653007327
Merged-chr10-116581519-11	chr10	116581442	116581642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028082)	promoter-TSS (NM_028082)	-31.0	NM_001359249	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	6.71652915138768	6.45373744555916	6.51624412559691	6.19975838305948	6.60302938549889	6.9760830663381	6.61006415426373	6.69853406975239	0.372494878249899	0.105562143985462	0.357715203367826
Merged-chr10-20125461-2	chr10	20125361	20125561	+	835.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 24 of 29)	intron (NM_008580, intron 24 of 29)	-23459.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	3.08359074039695	2.92450867058304	3.02386402254324	2.85180956380327	3.09231736536219	3.25341577696564	2.95095261041711	3.13970677171149	0.605449233819035	0.290646564152125	0.602869066641471
Merged-chr12-77238038-4	chr12	77237949	77238149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016893)	promoter-TSS (NM_016893)	-55.0	NM_001252614	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	6.48594116827005	6.61344051599119	6.63158744621024	6.60709537626109	6.48927018733202	6.3154243255366	6.6710490053454	6.65680991066667	-0.0678010803023822	0.748792953709408	0.901063951017401
Merged-chr9-118633038-4	chr9	118632928	118633128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 3 of 27)	intron (NM_133721, intron 3 of 27)	26319.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.55475416504867	6.27368466606264	6.24156659569356	6.91846599515888	6.27929230014004	5.73484034250611	6.5526902135738	6.45498101162918	-0.36475886581991	0.202845737407077	0.505367754389162
Merged-chr7-143295657-6	chr7	143295501	143295701	+	775.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_001461, exon 1 of 1)	non-coding (NR_001461, exon 1 of 1)	946.0	NR_001461	63830.0	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	3.6687114520079	3.74793774272389	3.86704386005223	3.3205719363314	3.91790853609124	3.34449101780793	3.75579124141712	3.81804740792927	0.224321160178251	0.667634679868819	0.862569997610997
Merged-chr7-81202584-4	chr7	81202544	81202744	+	880.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11160.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	2.8097969103453	2.92497446621501	3.19490118336448	3.31086561475545	3.08036467298653	3.24874055036556	3.23599373482746	3.07716893947939	0.288650488931593	0.635824584338464	0.845885426792793
Merged-chr9-110624503-3	chr9	110624382	110624582	+	730.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026012)	promoter-TSS (NM_026012)	-89.0	NM_026012	67169.0	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	3.11460579916486	3.11532830655454	3.11498211270394	3.2565528288087	3.11419188561908	3.09607928376199	3.16217078332085	3.28233024466077	0.0192627198563752	0.972108604380261	0.989909989430215
Merged-chr7-87924771-3	chr7	87924677	87924877	+	870.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081414, intron 4 of 9)	L1M2|LINE|L1	340609.0	NM_001143834	108071.0	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	3.35703290290692	3.13172148597224	3.56576961052123	4.02681419086889	2.9665472826826	3.07744515451412	3.1651899829368	3.2979607945407	-1.64257365030912	0.00929161975517598	0.0748949018198259
Merged-chr6-82902767-1	chr6	82902667	82902867	+	643.0	f0_balb.idr	Intergenic	L1MC4a|LINE|L1	-20914.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	3.10972753977708	3.04502551444841	3.21692664573755	3.11353557324646	2.78847749884896	2.82921843955677	3.04169926412652	2.86423351445136	-1.05501135218576	0.0823938986177507	0.311633450236458
Merged-chr18-82762799-4	chr18	82762692	82762892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3753.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	5.99561846693375	5.60048345624034	6.51290071462792	6.29984333044515	6.24807311142827	6.28197300841444	6.01054964014432	6.38120707739271	0.13291899706712	0.635734151207102	0.84587485323707
Merged-chr14-70107599-4	chr14	70107500	70107700	+	804.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	7507.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	3.83934695631057	3.90295221678515	4.05951447246002	4.48143308043801	4.08405729240418	4.46075446282834	4.22859474749289	4.44659470000941	0.469428554124791	0.305707157626005	0.618093672613785
Merged-chr15-25900753-4	chr15	25900644	25900844	+	955.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-32808.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	4.27276796914754	4.53616939796537	4.41024794670956	4.45307400511256	4.55501731307053	4.53970870384319	4.69345833144591	4.17111901934671	0.18340687412151	0.628730520864875	0.841764501921206
Merged-chr2-180702948-4	chr2	180702817	180703017	+	835.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175551)	promoter-TSS (NM_175551)	-815.0	NM_175551	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	4.1810417536715	4.14179728779853	3.90505174383794	3.50171382377158	3.81153523113775	3.86263932723113	3.93846901844031	4.25911940635651	0.0743811146425856	0.87867411801507	0.954698297745423
Merged-chr16-77329318-4	chr16	77329213	77329413	+	848.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015543)	promoter-TSS (NR_015543)	-15.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	3.98358048535489	3.99956215927715	4.33272834330361	4.02406153650829	3.99143563261726	4.15682816695734	3.81096901974676	4.25229526927821	-0.0735252214868803	0.864621400326301	0.949201660556057
Merged-chr8-85507164-3	chr8	85507052	85507252	+	683.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 4 of 11)	intron (NM_173866, intron 4 of 11)	14535.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	3.60882573213465	3.55091985741128	3.33599236759596	3.65462111860174	3.05935589087407	3.32076498653472	3.64153024481221	3.45048736400889	-0.570776080797915	0.299963192744287	0.612179983023751
Merged-chr17-12991844-4	chr17	12991725	12991925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175394, intron 1 of 5)	CpG	434.0	NM_001113533	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	6.21070324494392	6.17137024156498	6.25085695351819	5.98075906221279	6.33731841814329	6.60454909332536	6.41331370099001	6.35668352769805	0.428085336351021	0.0579212563639694	0.252621861469959
Merged-chr1-9701215-2	chr1	9701126	9701326	+	769.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1017.0	NM_008651	17864.0	Mm.479	NM_008651	ENSMUSG00000025912	Mybl1	A-myb|G1-419-6|repro9	myeloblastosis oncogene-like 1	protein-coding	2.82911545535338	2.67510556503434	2.8294980237139	2.49179204465784	2.65127210830706	2.51756714005013	2.75837046708603	2.99477036838474	0.166172534069778	0.806707082819223	0.925483423510202
Merged-chr15-66454158-4	chr15	66454038	66454238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019457, exon 5 of 12)	exon (NM_019457, exon 5 of 12)	46772.0	NM_019457	54562.0	Mm.244890	NM_019457	ENSMUSG00000022375	Lrrc6	LRTP	leucine rich repeat containing 6 (testis)	protein-coding	5.86688295890704	5.94476495346669	5.53954628778684	6.44240701405153	5.99423515719632	6.15870525570488	6.05773155590613	6.08456118691642	0.0861681993684222	0.765936345654416	0.908431085202381
Merged-chr5-3369529-4	chr5	3369442	3369642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	25649.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	5.46301565389949	5.18340585940302	5.34277457608512	5.91952926472278	5.41052259021924	5.48858794925812	6.05714107773748	5.48868979139944	0.18472345694911	0.579734396294685	0.815474743074892
Merged-chr10-99602460-4	chr10	99602336	99602536	+	651.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6735.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	2.58369887316392	2.84109566354886	2.87560895172543	2.67794178778488	3.04563159090214	3.17194025160319	3.04692069994304	3.21811760472053	1.6331995857156	0.00734693520823105	0.0630665100321608
Merged-chr4-138013027-1	chr4	138012927	138013127	+	786.0	f0_balb.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	15202.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	3.25501524846326	3.02688338057769	3.1008072848113	3.44463501093081	2.44042812642778	2.75469659042998	2.64021950550325	2.64588022490475	-3.54321722327596	4.97177574289861e-05	0.00112559168449039
Merged-chr14-122223861-4	chr14	122223759	122223959	+	949.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	9779.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	4.85875425355023	4.86125588167225	5.3187340842653	4.83966720264876	4.5432087063794	4.99707646889644	5.0387796115809	4.74061754423488	-0.28352969494114	0.424418542921261	0.716123917662497
Merged-chr16-55795733-6	chr16	55795674	55795874	+	948.267822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26364.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	4.03898631317106	4.65759324360037	4.82440924313062	4.62435938924705	4.23278439889881	4.10709592098507	4.4504683110384	4.38404485962977	-0.628268782898535	0.131787099790711	0.404206145010944
Merged-chr7-17024008-4	chr7	17023866	17024066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011155, intron 1 of 12)	intron (NM_011155, intron 1 of 12)	3948.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	6.50214276878729	6.64023705864415	6.56959070490573	6.7237100571412	6.57796210302801	6.26379793391067	7.04378823645831	6.54866014049945	0.0342389627434825	0.88618585496811	0.957247996194402
Merged-chr11-114694172-4	chr11	114694032	114694232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 3 of 13)	intron (NM_053273, intron 3 of 13)	18664.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	6.52707312120559	6.30298025957749	5.77885177887429	6.22883778185569	6.53353392072393	6.01247164922441	6.33283328889824	6.30767628048647	0.123118282308967	0.638882125289851	0.847409779354821
Merged-chr15-67088777-3	chr15	67088669	67088869	+	820.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88113.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	3.82377514823776	3.91138181700237	3.6329200107347	3.57587725802957	3.11965520804311	3.39412318425086	3.39566616847547	3.57816477416238	-1.23320222937129	0.0214244301301201	0.134016127272328
Merged-chr2-77276317-4	chr2	77276226	77276426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	4266.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	5.91725160184616	6.14311477919959	5.91829542825679	6.0715074066838	5.82145186593538	5.79794900598809	5.53576312148103	5.55966732341909	-0.535965817245456	0.035432633643143	0.186863059540814
Merged-chr6-47188432-4	chr6	47188331	47188531	+	861.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 20 of 23)	intron (NM_001004357, intron 20 of 23)	-55965.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	4.87303407527158	5.17041472411293	5.12695510583894	5.16611385148198	4.41923329777682	4.44426328875216	4.62266268210043	4.50913825209927	-1.26489501409359	0.000236251810788644	0.00416860873577712
Merged-chr5-31220171-2	chr5	31220071	31220271	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008014, intron 1 of 9)	CpG	374.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	3.93202607755125	4.13147800232249	4.03005230464862	3.75247249477429	4.1316035386439	3.83223905522049	4.18560972137781	3.93031238720091	0.203035401327843	0.643773680090012	0.849901404168518
Merged-chr11-119677333-4	chr11	119677228	119677428	+	923.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 3 of 33)	intron (NM_028898, intron 3 of 33)	74423.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	4.35107028100261	4.33307206803694	4.39714968327547	4.55668349655156	4.73963613083986	4.52640879561853	4.58130883474969	4.56135544151373	0.415169780207504	0.252176827700663	0.563542923002808
Merged-chr12-55385092-4	chr12	55384983	55385183	+	914.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310583, intron 1 of 6)	intron (NM_001310583, intron 1 of 6)	861.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	4.03018409449925	4.18261284304476	4.44848299934665	4.22222410715671	4.51500119633823	4.49589429250011	3.95954087409731	4.62924198990248	0.470113634619134	0.258514045005322	0.570389684111402
Merged-chr18-38393757-1	chr18	38393657	38393857	+	605.0	f0_balb.idr	Intergenic	MER33|DNA|hAT-Charlie	-25150.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	2.88609652128483	2.73311130582125	2.88647908706298	2.84438445335278	2.59212400786314	2.9340583839289	2.689272478439	2.76228897374233	-0.444525084930046	0.486262927207228	0.760045431293688
Merged-chr3-14836942-3	chr3	14836840	14837040	+	746.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-26598.0	NM_007606	12350.0	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	3.7779735042007	3.1403419859376	3.93840610932203	4.19963103163068	2.64602154494209	2.85541142310644	2.81719368250965	2.82347765119647	-6.71850767003292	3.42752782799058e-09	1.9899510870191e-07
Merged-chr15-5738323-4	chr15	5738227	5738427	+	741.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL1|LINE|L1	242009.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	4.03395369246981	4.1607422666082	4.30861667224887	3.90317436121821	4.1111857726865	3.87444450418665	4.20450788034315	4.5971482723738	0.308497982406432	0.483672502916461	0.757943839661194
Merged-chr2-130284416-4	chr2	130284310	130284510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130884)	promoter-TSS (NM_130884)	41.0	NM_130884	170718.0	Mm.29590	NM_130884	ENSMUSG00000027406	Idh3b	C78231	isocitrate dehydrogenase 3 (NAD+) beta	protein-coding	5.44226691684767	5.94356931266535	5.24858907187314	5.77753009536241	5.85759055429001	5.49546991737058	5.8432166873814	5.43941894811362	0.0606466723110402	0.842313491869505	0.940176660530117
Merged-chr4-141246709-4	chr4	141246606	141246806	+	813.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172520, intron 3 of 16)	intron (NM_172520, intron 3 of 16)	3822.0	NM_172520	213649.0	Mm.134460	NM_172520	ENSMUSG00000028919	Arhgef19	6030432F23|6430573B13Rik|WGEF	Rho guanine nucleotide exchange factor (GEF) 19	protein-coding	3.72476647243057	4.0961225598199	4.27806204105453	3.99949304135709	4.13167294463714	4.2278843827473	4.17474094427901	4.19094598737473	0.367959376163523	0.380668294688704	0.682959506520613
Merged-chr15-78247853-4	chr15	78247743	78247943	+	978.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 1 of 9)	intron (NM_008677, intron 1 of 9)	3032.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	6.8588615782206	7.01327239102528	6.90971062382768	6.45641077894854	6.76237969640146	6.65564246142773	6.11522260134124	5.49422129718297	-0.674846429913739	0.0358840278676769	0.188140042692499
Merged-chr18-55398478-4	chr18	55398372	55398572	+	666.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34|LTR|ERV1	-405881.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.7080229652992	3.82326419247888	3.9915435090683	4.13104505957821	3.81311421008795	3.31324651777555	3.40280099608964	3.70645854776117	-1.04270346038739	0.0478133699403804	0.22556388248849
Merged-chr6-113469661-4	chr6	113469562	113469762	+	876.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001034029, exon 14 of 14)	exon (NM_001034029, exon 14 of 14)	-1793.0	NM_178942	171095.0	Mm.213397	NM_134159	ENSMUSG00000030281	Il17rc	1110025H02Rik|Gm19850|IL-17RC|IL17-RC|IL17-RL|Il17rl	interleukin 17 receptor C	protein-coding	4.58609287889341	4.35120564061607	4.55032672746963	4.350725286539	4.20083577012807	4.33930863859257	4.14575541502741	4.30295146900118	-0.50185593366135	0.19202705222609	0.491538219433335
Merged-chr16-8637611-4	chr16	8637485	8637685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016881)	promoter-TSS (NM_016881)	116.0	NM_025708	66690.0	Mm.10068	NM_025708	ENSMUSG00000043140	Tmem186	2810440M13Rik|4432406C05Rik|AI648175|AW210586	transmembrane protein 186	protein-coding	7.36881990415819	7.37931318692313	7.17248094241736	7.27659527746116	7.55600329635473	7.67265667218608	7.40240243486479	7.70900038270099	0.382713980195054	0.03212242473428	0.175192864160702
Merged-chr13-63564954-4	chr13	63564820	63565020	+	856.279175	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001328514, intron 1 of 23)	CpG-3956	815.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	3.734292554305	3.78132845043828	3.89122250938449	3.76021321915586	3.63632122254264	3.96252145364808	3.87462312865403	4.19249218287406	0.380908554008872	0.404281876742281	0.701401021391738
Merged-chr1-39906177-3	chr1	39906080	39906280	+	895.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	5267.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	3.46254923993411	3.23174139686183	3.03554662176956	2.93825212603855	3.56435844403071	3.28583360987707	3.68237416499519	3.35246337024392	1.11120427682408	0.0483384130562009	0.226942807395774
Merged-chr9-115710293-3	chr9	115710222	115710422	+	791.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-199133.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	3.30021629254678	3.17692173146434	3.18898413015404	3.05005790339889	3.12724872336126	3.11040714148709	3.056548820948	3.40125030609343	0.0212754797639571	0.969604780397905	0.989034602712618
Merged-chr18-63864458-3	chr18	63864354	63864554	+	939.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014981, intron 20 of 27)	intron (NM_001014981, intron 20 of 27)	155759.0	NM_001014981	104082.0	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	3.44080311652622	3.21322448661103	3.7292524817218	3.80015547350472	2.9520661515939	3.18194396062102	3.3162083881484	3.26700210590452	-1.43850765127121	0.0150516649415395	0.105076741749102
Merged-chr1-151653651-4	chr1	151653548	151653748	+	859.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	82275.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	4.13454959691486	4.19279172396564	3.80384689922177	3.34175607915494	4.17100930960855	4.03149965012066	3.49132092198709	3.85442054402872	0.00895644027689555	0.986857738985038	0.995205005360357
Merged-chr9-59723313-4	chr9	59723239	59723439	+	839.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15575.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	3.91816130540629	3.97526740835649	3.86734050333796	3.9790842797627	4.29407863085954	3.81849642446096	3.79903984066352	4.1032287508238	0.253642174145543	0.56789958391326	0.808351591137394
Merged-chr16-38522715-4	chr16	38522633	38522833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024273)	promoter-TSS (NM_024273)	-70.0	NM_024273	76916.0	Mm.132231	NM_024273	ENSMUSG00000002846	Timmdc1	2810021C21Rik|4930455C21Rik|AV135763	translocase of inner mitochondrial membrane domain containing 1	protein-coding	8.3410736319537	8.47071706748728	8.20813119125568	8.61228876477425	8.43409472079883	8.55295726634598	8.5208800177263	8.55941820032027	0.113930222844142	0.482437826710926	0.757239458339229
Merged-chr7-28675968-2	chr7	28675901	28676101	+	752.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MURVY-LTR|LTR|ERV1	-16848.0	NM_207238	233040.0	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	3.09009882605072	2.77278912536205	2.81413232568674	2.70780587845218	2.69533506403026	2.71971160339539	2.86338176540546	2.53983180527222	-0.66471099220021	0.317365969600448	0.629294714048257
Merged-chr9-70282307-4	chr9	70282189	70282389	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	74939.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	5.43762330320001	5.47182855499607	4.84117182308055	5.18505201403896	5.02266454650799	4.71147197203052	5.03713125659425	4.98899627261361	-0.580864904787452	0.0828140516671495	0.312629084254364
Merged-chr3-8971834-4	chr3	8971730	8971930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	MLT1J1|LTR|ERVL-MaLR	-7684.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	6.37562818628108	6.91350932576273	6.41447272762209	6.36780519148014	6.53464669055118	6.84344864614396	7.49461274892592	6.39116190359655	0.49866674226353	0.0929821175380983	0.333587406463926
Merged-chr7-92636675-1	chr7	92636575	92636775	+	1000.0	f0_balb.idr	5' UTR (NM_028665, exon 1 of 12)	5' UTR (NM_028665, exon 1 of 12)	467.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	4.54699575440774	4.58044135373647	5.0560139192781	4.91393023729639	4.57459045950063	4.68074314155023	5.03083843703808	4.78756804499164	-0.0479836356203108	0.894766350940678	0.96069135232764
Merged-chr2-129306200-4	chr2	129306075	129306275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040371, exon 4 of 5)	non-coding (NR_040371, exon 4 of 5)	3797.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	6.75127751310192	6.57841219502479	7.31848721467584	7.1785443845302	6.66676887027438	6.28012610406465	6.89416478457583	6.73296768756041	-0.466617566322993	0.0675647569897457	0.27747471946533
Merged-chr17-71184035-3	chr17	71183933	71184133	+	863.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022882)	promoter-TSS (NM_022882)	55.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.87409845261556	3.99637242952627	4.12522343179497	3.73928370673021	4.13280756661731	4.38253463984394	4.0610085967883	4.21055200531366	0.714454208549202	0.0899266253805985	0.327456185436444
Merged-chr8-33619064-3	chr8	33618952	33619152	+	965.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178648)	TTS (NM_178648)	19431.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	3.71499575039487	3.4781835457435	3.83089034792325	4.28376534653377	4.22063830193408	4.25217592289451	4.27089707713892	3.93480190536199	0.767539911301639	0.131705966848315	0.404116691710329
Merged-chr12-20921234-4	chr12	20921084	20921284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-105405.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	5.39048496186169	5.52109063723242	5.72370057507942	5.3583265653952	5.62401124981279	5.8232272843149	5.89535898060593	5.90063155379254	0.527567448685826	0.0489193076972932	0.228674551952823
Merged-chr3-107098879-4	chr3	107098780	107098980	+	933.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2687.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	4.26817215268743	4.47179535063454	4.16788013144469	4.5199588065776	4.49521403320905	4.95033929078653	4.04280665207168	4.67826473246886	0.459589870861012	0.277710839106202	0.589730595087572
Merged-chr2-22807522-4	chr2	22807426	22807626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	33199.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	6.11953788322748	5.72000671679431	5.78281465862083	5.86614469958734	5.71246330550412	5.63152404222561	5.89018278929046	5.65147453644417	-0.24750094456319	0.339364591067911	0.64871716155395
Merged-chr14-25736799-4	chr14	25736701	25736901	+	960.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	32055.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	5.27492315410296	5.20436361012694	5.80401076970414	6.01025682340582	5.03492507427327	5.20621606513709	5.75254046920107	5.4547530652591	-0.42273030195507	0.23004328969763	0.539194260978254
Merged-chr5-135187670-3	chr5	135187572	135187772	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011714, exon 1 of 19)	exon (NM_011714, exon 1 of 19)	349.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	4.85877455207434	4.6808585927425	5.13154779341775	4.84931064211125	5.03543717735852	5.20872902619602	4.75919321758924	5.24458379314395	0.369637705874832	0.265770544396582	0.577438760598551
Merged-chr7-129591980-4	chr7	129591896	129592096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172255, exon 1 of 29)	exon (NM_172255, exon 1 of 29)	133.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	5.23948172446418	5.53557873226898	5.59682699164085	5.69340358953983	5.42147846416653	5.57726756199913	5.24831119189473	5.969731970706	0.0702508337482837	0.818731586579132	0.930477529358738
Merged-chr10-81633727-4	chr10	81633609	81633809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027480, intron 2 of 19)	intron (NM_027480, intron 2 of 19)	5169.0	NM_027480	70615.0	Mm.304382	NM_027480	ENSMUSG00000054708	Ankrd24	4631433D01Rik|5730519E19Rik|D10Bur2e	ankyrin repeat domain 24	protein-coding	7.74372933254005	7.27077188776504	7.78212988931574	7.78763817347778	7.195993257242	7.23863902185795	7.4024598915208	7.1187453616869	-0.565037854765948	0.00476866656589204	0.0458737106338105
Merged-chr3-142765175-4	chr3	142765064	142765264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145546)	promoter-TSS (NM_145546)	-83.0	NM_145546	229906.0	Mm.271756	NM_145546	ENSMUSG00000028271	Gtf2b	-	general transcription factor IIB	protein-coding	8.49068788261655	8.76519327520947	8.63086990488958	8.57563751518182	8.87945233957213	8.91734545939451	8.50240448184821	8.58391300911429	0.144961504079296	0.39023400394525	0.690441614884886
Merged-chr5-114772886-6	chr5	114772759	114772959	+	927.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_027872)	TTS (NR_027872)	632.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	4.36482217050411	4.74139171436269	4.41290926575263	4.32976161310598	5.08853183562568	4.91171953836326	4.48249166077675	4.58415720893667	0.71140698249023	0.0620312936613786	0.263459958918985
Merged-chr7-142982035-4	chr7	142981933	142982133	+	828.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12769.0	NM_008554	17173.0	Mm.196417	NM_008554	ENSMUSG00000009248	Ascl2	2410083I15Rik|Mash2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding	4.12393142885498	4.31704586062241	4.39921193457307	3.79119152549838	4.67774463158311	3.96696584203797	4.60236549421218	4.47613267654056	0.709033726854113	0.109413122659702	0.365262551996626
Merged-chr16-94239334-4	chr16	94239243	94239443	+	977.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	50948.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	3.80127522395127	4.34191420131942	3.86276258582276	4.15347846205809	4.31135782215125	4.48484163167758	4.45179049827366	4.39331863550001	0.825139359691146	0.0501237628666508	0.232155083100295
Merged-chr2-166304762-3	chr2	166304675	166304875	+	890.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30867.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	3.96262227869429	3.75795526630098	3.55137794819358	3.63463389909689	3.57583217639615	3.84105217074664	3.75797915587422	3.96072847253546	0.165099155362242	0.726856639374714	0.891273682846738
Merged-chr6-82991514-4	chr6	82991368	82991568	+	804.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	intron (NM_033079, intron 4 of 9)	42003.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	3.19487264075134	3.45171889580964	3.43677652027553	3.46300857050996	3.72538786500117	3.55089345484539	3.30987859360407	3.31990744711304	0.336601870482961	0.524465936884918	0.782964427138396
Merged-chr8-119422237-3	chr8	119422146	119422346	+	967.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14916.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	3.79432080973787	3.88187189953657	3.74504281368905	3.97848358878516	3.55137800412534	3.44418145878253	3.38702246929557	3.93108160244503	-0.804939337576369	0.107988434991665	0.362559597364667
Merged-chr9-22519726-3	chr9	22519619	22519819	+	729.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360259, intron 5 of 22)	intron (NM_001360259, intron 5 of 22)	44004.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	4.02205276776535	3.53172961314906	3.46206907109322	3.52834449564564	3.34275147230023	3.31841658531706	3.38986687044407	3.77089978380097	-0.595571009367071	0.270657419647495	0.58243909949623
Merged-chr11-54703478-2	chr11	54703378	54703578	+	997.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84225.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	3.42139904769392	2.90477880441042	3.42191141805974	2.76686830181376	3.36943885332911	3.24100211400518	3.29802156509395	3.66009893064376	0.875187726667352	0.160449347600511	0.448621443584546
Merged-chr9-122138864-4	chr9	122138753	122138953	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357775, intron 4 of 7)	L1M5|LINE|L1	21394.0	NM_001357776	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	5.6686142400577	5.29373498155904	5.13950681762199	5.17386112416011	4.85941216048424	5.14111425415513	4.73740425059272	5.40230513843238	-0.511593561575174	0.135002009903501	0.409011154461621
Merged-chr11-62648050-2	chr11	62647950	62648150	+	840.099976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175002)	promoter-TSS (NM_175002)	-1.0	NM_001357955	192976.0	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	3.39571525640986	3.51092899662968	3.50810671727054	3.12436929886062	3.49869356949878	3.51139320115571	3.68956510945633	3.39437362564287	0.495138305673899	0.340787647607737	0.64989490965976
Merged-chr15-25282512-4	chr15	25282413	25282613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131251.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	6.73942435794864	6.75694744441492	7.36923794271056	7.20355855069811	7.01399767932084	6.85563460812819	7.04079620086058	7.09481200569632	-0.064402840160495	0.774618614777453	0.911936262735388
Merged-chr1-157285565-4	chr1	157285463	157285663	+	893.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177644, intron 3 of 17)	intron (NM_177644, intron 3 of 17)	-126789.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	4.58578713704574	4.48744109556274	4.42412455711751	5.00886962606199	4.38379418782304	4.14744091979869	4.36069573990649	4.4213472427748	-0.759521534654015	0.0581088705465554	0.253206690947858
Merged-chr5-43181664-4	chr5	43181569	43181769	+	972.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-51794.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	5.18583807776273	4.7506675714393	5.53696304273913	5.44916159906692	5.70329342786829	5.39594659188207	5.45720998575266	5.28007797969841	0.361592135996511	0.272896740218783	0.584364672732811
Merged-chr1-171057515-4	chr1	171057419	171057619	+	990.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356511, intron 3 of 4)	intron (NM_001356511, intron 3 of 4)	1875.0	NM_001356511	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	6.14219519356627	5.7952904466917	6.08387620929232	6.34945890915323	6.06732692160756	5.44347584556952	6.14965592621576	5.95165436760455	-0.28168605460046	0.317082962576442	0.628937251269434
Merged-chr12-69951261-3	chr12	69951165	69951365	+	794.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178628, intron 9 of 14)	Lx7|LINE|L1	-12144.0	NR_036607	100040999.0	Mm.394588	NR_036607	ENSMUSG00000079076	Gm3086	-	RuvB-like protein 1 pseudogene	pseudo	2.95443779966705	3.49134969716814	3.09838667472903	2.94157795702902	3.53297758187129	3.46284113211929	3.53996678887992	3.45372751951509	1.29667845153508	0.0218180643459497	0.13570325079346
Merged-chr1-156624410-4	chr1	156624308	156624508	+	848.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 3 of 12)	intron (NM_001136104, intron 3 of 12)	49931.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	4.78592783207616	4.3737287938782	3.94154634243068	4.21531881180783	4.6655046227757	4.81935178523941	4.29994652016371	4.53210169174698	0.528221344406055	0.210716561193776	0.515327060959003
Merged-chr19-9975105-4	chr19	9975018	9975218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5482.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	8.14806941756878	8.28112959216343	8.04321592303593	7.82376066349009	7.87558249720715	7.99252891285782	7.84545064757103	7.8405528526603	-0.244213907700603	0.166611296906414	0.457960964592688
Merged-chr19-56566190-4	chr19	56566064	56566264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025811, intron 2 of 10)	intron (NM_025811, intron 2 of 10)	17903.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	6.14943216317683	6.23399676877646	6.13106499992676	6.0211471977525	6.15530089335382	5.7232229889062	5.93310500203494	5.79199613408662	-0.319502757404445	0.200803167951909	0.502954771329753
Merged-chr11-119942947-4	chr11	119942843	119943043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130862)	promoter-TSS (NM_130862)	-149.0	NM_001037754	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	8.07482201997119	8.13650564179787	7.80373010418418	7.9067370090989	8.28185500733864	8.24079261863826	8.11853137897769	7.98412234451849	0.229173298116159	0.179428289992137	0.475667183458399
Merged-chr16-21947574-4	chr16	21947471	21947671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025693)	promoter-TSS (NM_025693)	-19.0	NR_037773	66664.0	Mm.46480	NM_025693	ENSMUSG00000022856	Tmem41a	2900010K02Rik|5730578N08Rik	transmembrane protein 41a	protein-coding	7.04357649568317	7.04553859927218	6.72051396052964	7.08350467509042	6.96830631865795	6.9431251951478	7.08964613961354	6.6362635692956	-0.0926734887524171	0.65756291336523	0.8573854297568
Merged-chr2-131091066-4	chr2	131090989	131091189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4324.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	7.21084967985539	7.23764473282682	7.34567675056903	7.33843650833076	6.60411418075525	6.93841261215448	7.23915911077632	7.11717575955123	-0.410020324859776	0.0526473946376369	0.239141362019727
Merged-chr12-85705519-7	chr12	85705414	85705614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	18794.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	7.00285519537244	7.2814682028744	7.31239431543368	6.88687450965251	7.04157664986741	6.87207234653766	6.76665174323998	6.92190881497893	-0.297031252823934	0.155965800621944	0.441850702493124
Merged-chr19-56069100-4	chr19	56069001	56069201	+	851.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	173780.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.19021965200261	4.01919108381298	4.23328684517951	4.16415286779883	4.12968268732132	4.07538335371459	4.03675457057487	3.95161342922854	-0.260207851650775	0.524039204380281	0.782704938068323
Merged-chr1-64374096-4	chr1	64374034	64374234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-158670.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	6.56899729464873	6.17136982483858	6.34514159208868	6.19475239566594	6.23016999346105	6.26903591995557	5.97262593848555	6.21090954060125	-0.215151052208692	0.363713085298535	0.668717613743463
Merged-chr4-129619107-4	chr4	129619012	129619212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198026)	promoter-TSS (NM_198026)	-19.0	NM_198026	230767.0	Mm.441132	NM_198026	ENSMUSG00000040795	Iqcc	BC026978	IQ motif containing C	protein-coding	6.11968858291418	6.09304694913434	5.65886631665865	5.80421074769163	5.86541335558458	6.01616776164769	5.9894019244517	5.97329772093025	0.0492522330246119	0.845803527834572	0.941578483422717
Merged-chr2-167742678-4	chr2	167742575	167742775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	51498.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	6.35906693661332	6.5842049159994	6.34139680940517	5.67019809167192	6.8234009744948	6.78923348246544	6.98988277804304	6.44559571157274	0.743878136671397	0.00688201035322465	0.0601639173338464
Merged-chr17-45592961-4	chr17	45592840	45593040	+	802.325012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022880)	promoter-TSS (NM_022880)	-547.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	3.73467496570747	3.65454284546023	3.79141084723	3.87736758492855	4.22130727829621	4.11810028021627	4.1099521752486	3.99253709618752	0.925568625949209	0.0320911958182771	0.175062785649076
Merged-chr5-135982491-2	chr5	135982390	135982590	+	984.4166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_011776, intron 1 of 7)	intron (NM_011776, intron 1 of 7)	2385.0	NM_011776	22788.0	Mm.1381	NM_011776	ENSMUSG00000004948	Zp3	Zp-3	zona pellucida glycoprotein 3	protein-coding	3.32335522508498	3.20580519546494	3.26248456310236	2.92543230076806	3.43477359484467	3.8973004148549	3.42424337744566	3.38052444514976	1.31627426364171	0.0168801259751562	0.114027758070195
Merged-chr13-113917758-4	chr13	113917654	113917854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	123246.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	6.32683401128147	6.55312851393911	6.81021176375057	7.30822641086709	6.93542353056315	6.26558579321891	6.94272507526555	6.91125501717156	-0.0312735087701277	0.913369414111282	0.967524531047837
Merged-chr9-49051089-3	chr9	49050988	49051188	+	877.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-4493.0	NM_012039	26951.0	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	3.69742593126519	3.97530981494058	4.0946507932285	4.04405328723306	3.29659528182152	3.3171694684736	3.39804546906113	3.34246713941411	-2.13649442575239	6.28387566254363e-05	0.00137286674580784
Merged-chr17-84188651-4	chr17	84188556	84188756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001806)	promoter-TSS (NM_001001806)	-709.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	8.62836287738431	8.48110368367397	8.69970918608398	8.73946154575238	8.50276560444673	8.59710059805546	8.58124528209248	8.72357277076653	-0.0525856687167481	0.729872518746642	0.892804127302382
Merged-chr17-25016847-4	chr17	25016748	25016948	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134126, exon 1 of 30)	5' UTR (NM_134126, exon 1 of 30)	762.0	NM_134126	106633.0	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	5.07950298547175	4.8760637301398	4.8083949810584	4.60311375983224	4.94171575011957	4.82441274277434	4.74756725704673	5.10702144539624	0.156877899705108	0.644946031434365	0.850573912153132
Merged-chr5-117114807-1	chr5	117114707	117114907	+	1000.0	f1_c57bl6.idr	intron (NM_001122666, intron 1 of 12)	intron (NM_001122666, intron 1 of 12)	1186.0	NM_001122666	71954.0	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	3.05629439837582	2.95828391551734	3.11589972700318	2.96941194909687	3.23528778923023	3.16575647851875	3.16007005722416	2.99331569817077	0.50178415563945	0.369910075771797	0.674099060526606
Merged-chr6-120191104-3	chr6	120191002	120191202	+	833.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-2721.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	4.25907351445881	3.918850216695	4.30026592370384	4.53900110877959	3.55528094668532	4.05673493985011	4.01789301730774	3.93089277042449	-1.03260160454873	0.0275074694544571	0.158218518650408
Merged-chr14-21813431-4	chr14	21813340	21813540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18121.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	5.40424019765498	5.8117839299459	5.33729713874716	5.71204643740615	6.17971548651291	6.13540545200745	6.18055295926472	5.97792337089573	0.838969132174561	0.00145690143873114	0.0182250944652802
Merged-chr18-88847528-3	chr18	88847417	88847617	+	811.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46690.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	3.40473143953808	3.11896833864171	3.69037822727546	3.7464934298901	4.06787648600622	3.64365840390179	3.67500101386885	3.73838281797009	0.831844424488515	0.132075099961292	0.404590699763458
Merged-chr13-5726281-6	chr13	5726222	5726422	+	948.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131770.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	4.95489725244626	4.48645363924515	5.70745521644675	5.19766379235376	4.68517725362808	4.69233560555871	4.70861971962873	4.59922983055225	-0.972154344294439	0.0158938501848473	0.109168036505572
Merged-chr13-98761948-4	chr13	98761845	98762045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 11 of 25)	intron (NM_172591, intron 11 of 25)	53504.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	5.02227340337529	4.73320215219482	4.95181922293788	4.98422259343718	5.20329594189644	5.35756589942525	5.15994510694991	5.21214741251948	0.574531160897377	0.0588371504577923	0.255374110708563
Merged-chr8-47690059-4	chr8	47689959	47690159	+	963.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14900.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	4.74410101635469	4.99528886642779	4.81892575612279	4.39465018783138	4.81820221853609	4.99107719775606	4.79577382761844	4.4904088717299	0.088995707764243	0.810140786001372	0.926776956547369
Merged-chr7-99980217-6	chr7	99980004	99980204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175388, exon 1 of 6)	exon (NM_175388, exon 1 of 6)	354.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	3.16177740508158	2.9475541329797	3.16216534130294	3.14344845474877	3.30885268850983	3.39228712548186	3.42155561186264	3.22023879617833	0.853682386419791	0.113830090661616	0.373103335015803
Merged-chr11-105420897-4	chr11	105420795	105420995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039242, intron 4 of 5)	L2|LINE|L2	35840.0	NM_172568	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	6.84642915187657	7.23248944440528	6.80605073950202	6.63684268616523	7.00020321008356	7.03762288963672	6.72860790535013	6.38840785755895	-0.108443586767108	0.659190500645279	0.858145103575869
Merged-chr4-43578699-4	chr4	43578584	43578784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172866)	promoter-TSS (NM_172866)	-51.0	NM_172866	242406.0	Mm.259311	NM_172866	ENSMUSG00000028468	Rgp1	1110029E03Rik|AI527196|F730001J03|mKIAA0258	RAB6A GEF compex partner 1	protein-coding	6.75852995477805	6.6568579691935	6.34142279027038	6.61636920987312	6.34987407498154	6.46052811819103	6.65527420052161	6.59467953299577	-0.129948268278184	0.554108886394523	0.800538207856535
Merged-chr1-171329277-7	chr1	171329206	171329406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357552)	promoter-TSS (NM_001357552)	161.0	NM_011615	21945.0	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	5.76147600547643	5.82012274072492	6.31581148162464	5.73653404716322	6.09086611445286	6.26542013210928	6.15728257150812	6.39444759081839	0.482067408701406	0.0632639365657713	0.266943134792521
Merged-chr13-52596889-4	chr13	52596791	52596991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011518)	promoter-TSS (NM_011518)	9.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	6.60400070926229	6.20494336566626	6.28926066918406	6.24441620179027	6.21666654344578	6.53822769626032	6.25707827082997	6.41049594531532	0.0271790043332861	0.906791715534914	0.965425954552266
Merged-chr14-122601824-3	chr14	122601733	122601933	+	749.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 6 of 24)	intron (NR_153443, intron 6 of 24)	67505.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	3.42600307146348	3.35804344780286	3.90758161170891	3.70087343210319	3.16557508912722	3.41836482039095	3.6256971316947	3.36499802163198	-0.730862979324971	0.181658746669476	0.478311096108792
Merged-chr5-92083083-4	chr5	92082993	92083193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080797)	promoter-TSS (NM_001080797)	-176.0	NM_001080797	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	5.60034250246327	5.41021817447732	5.700702506006	5.64216457337238	5.22785527100232	5.48948609426643	5.59844906146146	5.69665242242825	-0.153886738303592	0.58479555597404	0.817767094530092
Merged-chr5-130044304-4	chr5	130044182	130044382	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007761, intron 4 of 5)	intron (NM_007761, intron 4 of 5)	14976.0	NM_007761	12909.0	Mm.18072	NM_007761	ENSMUSG00000025532	Crcp	AL022669	calcitonin gene-related peptide-receptor component protein	protein-coding	3.870989125657	4.2967551874354	4.05454543851213	4.39506925583244	4.77761710488632	4.95207575819578	4.54851982183525	4.67823852471472	1.24769302011008	0.00249037890884873	0.0276713519127293
Merged-chr1-151312681-4	chr1	151312594	151312794	+	978.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31792.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	5.23322108246538	5.02024436096692	4.90444595029862	5.23584582167737	4.84927919212963	5.11629209451483	5.08729963934719	5.00923753360388	-0.201319507023167	0.523313097653984	0.782464816143387
Merged-chr8-25973294-4	chr8	25973192	25973392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029884, intron 1 of 17)	intron (NM_029884, intron 1 of 17)	3452.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	6.30413624532052	6.22755801546238	6.38919120428751	6.25088097498011	7.70669633506481	7.26989605174019	7.76696346152852	7.88329537491239	1.91434837576579	6.1213364725766e-20	2.02656097107688e-17
Merged-chr6-59208869-4	chr6	59208784	59208984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081145)	promoter-TSS (NM_001081145)	14.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	8.56612851415474	8.685225419097	9.02276581791003	8.83698239306381	8.71902014617874	8.79259801227004	8.68611122416728	8.65482915242724	-0.0953935574941836	0.553366016923393	0.800173960261692
Merged-chr10-21419402-4	chr10	21419315	21419515	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	42115.0	NM_178713	237320.0	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	4.57186707693261	4.69276882070878	5.08126902569149	4.65106844128798	6.28298056986203	5.91680043355865	6.03621051563101	6.38121508039385	2.44762706749589	9.08751816639078e-17	1.96608041205328e-14
Merged-chr6-72165045-4	chr6	72164960	72165160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41863.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	5.79217074619236	5.39833950600044	5.48718549609405	6.04913916650401	5.90967103887113	6.19341962419347	6.12461103430791	6.11424396524302	0.563213170505334	0.0471794625391232	0.223610797980573
Merged-chr9-61967435-3	chr9	61967338	61967538	+	947.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 5 of 7)	intron (NM_028748, intron 5 of 7)	-20639.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	4.17179682635748	3.46694530638764	4.21085679296504	3.76806172025124	3.50890140107371	3.88292228986274	3.69150174026286	3.81173002260788	-0.593217343365348	0.247775764966209	0.558928540740629
Merged-chr6-29171225-4	chr6	29171147	29171347	+	917.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001101443, exon 5 of 5)	exon (NM_001101443, exon 5 of 5)	-6523.0	NM_133925	68272.0	Mm.40802	NM_026650	ENSMUSG00000029701	Rbm28	2810480G15Rik|AI503051	RNA binding motif protein 28	protein-coding	4.60809968325565	4.89362558375838	4.608821035945	4.72916196008007	4.80534410571509	5.08439520538883	4.92284376124451	4.76709694786174	0.359875621015724	0.282345092807061	0.594517682403819
Merged-chr2-129261329-4	chr2	129261220	129261420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35892.0	NM_181589	70466.0	Mm.45785	NM_181589	ENSMUSG00000048327	Ckap2l	2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm	cytoskeleton associated protein 2-like	protein-coding	5.99311520244396	5.99223340052714	5.54571506244836	5.96424795464696	5.70345579316682	6.05933658283556	5.80837686256509	5.92539340875868	-0.0355645454870392	0.891920793035665	0.959575887733914
Merged-chr11-74826343-4	chr11	74826226	74826426	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4598.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	5.88122990691943	5.65240590013182	5.22154464309805	5.61505422286166	4.88030532860101	5.0348605743083	4.98833909480891	4.97078319546699	-1.1938356034465	0.000127083514105308	0.00248098668417491
Merged-chr1-72711272-4	chr1	72711164	72711364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009084)	promoter-TSS (NM_009084)	4.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	7.15993132642515	7.09453467028946	7.20602107205981	7.14299581532473	7.35094432818272	6.93980982736447	7.38141790674801	7.21193837300871	0.121651797124455	0.525239661862847	0.783229855070132
Merged-chr12-110957210-4	chr12	110957113	110957313	+	825.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175336, intron 18 of 20)	L1MB7|LINE|L1	21405.0	NM_001361917	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	4.62788818665911	4.17666114897192	3.71727906393124	4.27678334025293	4.26629874326593	4.14969032731281	4.57139238703616	4.62549238146339	0.421033004818027	0.355916048726892	0.662610987347058
Merged-chr3-146111136-3	chr3	146111038	146111238	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3102.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	5.76206076348196	6.0858473281472	5.88535778750688	6.32054582654489	4.10502910974073	4.32836043852645	4.57440447977305	4.43061059793885	-3.41717339862669	1.01690189076335e-19	3.26045313885786e-17
Merged-chr13-29292965-4	chr13	29292847	29293047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131896, intron 15 of 16)	RSINE1|SINE|B4	276692.0	NR_045075	77920.0	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	5.46600699665924	5.42065367587309	5.55434789012338	5.83889852727397	6.00258851398973	5.34565301274053	5.65903248260655	6.21290923047369	0.425600618675891	0.170089259741808	0.46307659016619
Merged-chr6-149309641-4	chr6	149309487	149309687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001289662, exon 1 of 5)	5' UTR (NM_001289662, exon 1 of 5)	173.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	7.49128107906063	7.73297870534947	8.44900573318434	7.9073329621177	7.66868461727286	7.91426392134816	7.95686713377461	7.98317714961068	-0.0786601069174798	0.730735447338123	0.893249384431817
Merged-chr5-146794252-4	chr5	146794158	146794358	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	(CCCCAG)n|Simple_repeat|Simple_repeat	698.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	4.46071477616111	4.61418075631949	4.66025004336804	4.4484933506581	4.60048693047534	4.40467014985283	4.4414758340568	4.69325035461828	0.00515206728429432	0.988585038834155	0.995479932082398
Merged-chr2-122581885-4	chr2	122581785	122581985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	29392.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	5.85911062178475	5.76922099230707	6.81871935006231	6.48244122293567	5.61653882285887	5.58859243355906	5.53671229679481	5.78193875159401	-1.07034440674784	0.000767922128008798	0.0108884321015016
Merged-chr9-35038509-4	chr9	35038415	35038615	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78213.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	4.63046233318529	4.98176208218557	4.94449831881999	4.69758041740967	5.20127446686074	5.08252933390756	4.92063860213245	4.94116264603449	0.462845932439544	0.155871292991164	0.441705659838286
Merged-chr1-94721221-4	chr1	94721131	94721331	+	941.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76211.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	4.82901471588098	4.77030047065361	4.59544303127589	5.01690795013907	4.97283775134692	4.68426148033052	4.84163232010484	4.5040478787822	-0.11051817951983	0.756142318778451	0.904159100355911
Merged-chr6-99667445-4	chr6	99667338	99667538	+	924.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025829)	promoter-TSS (NM_025829)	-667.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	4.52354399880911	4.57356815274099	4.75287765602788	4.88620310945861	4.36607085557167	4.32100439802832	4.54432834450516	4.64068040300378	-0.51879421071249	0.159896124287982	0.44769279485069
Merged-chr9-74952233-4	chr9	74952118	74952318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113283)	promoter-TSS (NM_001113283)	-662.0	NM_001359816	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	6.198278462452	5.86432324917485	6.09085236466146	6.31215020421966	6.74965027331016	6.71933351779568	6.88800545283239	6.63041100709515	0.894287851270841	8.816036215472e-05	0.00182789583973516
Merged-chr6-54955266-4	chr6	54955224	54955424	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	16337.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	3.75742747400067	3.87172197344627	3.62976559918354	3.70089631805781	4.36625270382822	4.58817971540059	4.2424127641367	4.41673062856782	1.72476832919177	3.66794262185129e-05	0.0008619362425908
Merged-chr11-77468002-4	chr11	77467906	77468106	+	929.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139130, intron 5 of 9)	CpG	4093.0	NM_139130	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	4.78296416345331	5.00825476427049	4.41035084093499	4.37299144206435	4.69670001060146	4.58951598602857	4.89587954982392	4.78054606363037	0.175868385445852	0.641082875160994	0.848590400530615
Merged-chr3-22087940-3	chr3	22087843	22088043	+	721.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	11291.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.62297703650271	3.27948416719573	3.78046859899132	3.9134924077526	3.56694423933223	3.99708361115417	3.5532104501296	3.82646264226851	0.197038351876272	0.70755175411662	0.882521006996459
Merged-chr10-127642948-4	chr10	127642862	127643062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009284)	promoter-TSS (NM_009284)	-24.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	7.45273541753532	7.49992027767952	7.31185564514279	7.36506027453995	7.48176186888094	7.69653553611074	7.73622621870159	7.44885654727197	0.245751529637707	0.167604214174796	0.4593900558646
Merged-chr16-64756536-4	chr16	64756468	64756668	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14371.0	NM_026273	67609.0	Mm.212157	NM_026273	ENSMUSG00000059920	4930453N24Rik	AI649104|din	RIKEN cDNA 4930453N24 gene	protein-coding	4.64423629268493	4.64210749046933	4.68341001119471	4.76466356934487	4.51457327493802	4.65340692493156	4.58422473971826	4.68034404293689	-0.189270356728016	0.580875823391409	0.816043625532665
Merged-chr18-80119096-4	chr18	80118985	80119185	+	904.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_053117, exon 3 of 3)	3' UTR (NM_053117, exon 3 of 3)	32397.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	4.66809194716486	3.98501170657291	4.59448608218912	4.75940142615139	4.3671256042433	4.60520284394701	4.27509329668193	4.66572973400001	-0.128947566838528	0.757695373983989	0.904815773586341
Merged-chr4-134005131-4	chr4	134005030	134005230	+	862.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145833, exon 4 of 4)	3' UTR (NM_145833, exon 4 of 4)	-4266.0	NM_026144	67422.0	Mm.100290	NM_026144	ENSMUSG00000012117	Dhdds	3222401G21Rik|CIT|DS|HDS|W91638	dehydrodolichyl diphosphate synthase	protein-coding	4.34560296673688	4.37941380204294	4.45967283557677	3.17173968838655	4.06718941401234	4.11067260244002	4.01698059941375	4.03222903903684	-0.342833508156608	0.537921707346917	0.79126455418755
Merged-chr1-16059920-4	chr1	16059831	16060031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33394.0	NM_001243238	75799.0	Mm.78557	NM_001243238	ENSMUSG00000067795	4930444P10Rik	-	RIKEN cDNA 4930444P10 gene	protein-coding	6.30292524994248	6.0046933242531	6.28576609025412	6.17483322601062	6.1529055697859	5.97752391577575	6.64339635674005	6.29952548226706	0.148299869792213	0.554404804233725	0.80074000106465
Merged-chr15-66866148-3	chr15	66866063	66866263	+	776.788879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25230.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	3.26771392340917	3.37127700985168	3.65254721091323	3.29117443108544	3.49264257957283	3.61782295580146	3.31860655658302	3.55184228061304	0.343830748556855	0.503903672998086	0.770592637321386
Merged-chr17-29848962-4	chr17	29848888	29849088	+	950.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081160, intron 6 of 15)	intron (NM_001081160, intron 6 of 15)	38894.0	NM_001081160	74762.0	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	4.92328361025944	4.84529155934238	4.29931403238969	4.89163824311462	4.85405079536499	4.8433564916322	4.7621330861713	4.66629413608035	0.0261020395840484	0.942133222961518	0.979062797089676
Merged-chr12-91637642-4	chr12	91637534	91637734	+	880.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175367, exon 7 of 7)	3' UTR (NM_175367, exon 7 of 7)	-47147.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	3.56425841620023	3.62992423841302	4.12123114621448	3.72216871728355	3.80893840066723	3.35212702706455	3.94341333450995	3.37657474377156	-0.37152611494787	0.493030483128321	0.763963269735953
Merged-chr2-48950195-7	chr2	48950073	48950273	+	904.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355296)	promoter-TSS (NM_001355296)	61.0	NM_001355296	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	4.82634838231795	4.54839774803041	4.36575049985978	4.52971378305907	4.49696845537884	4.34664712009107	4.47728201337228	4.6518206327584	-0.168572217391077	0.64793516171929	0.851916966085734
Merged-chr17-29095508-4	chr17	29095406	29095606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007669, intron 1 of 2)	CpG	1737.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	7.93028897116273	8.08286878600293	7.99406038334179	7.71286340702001	7.87311142134641	8.23751511344483	8.00863211909598	7.91914376290447	0.106794708970543	0.551628914249637	0.799073691139046
Merged-chr3-104219869-3	chr3	104219746	104219946	+	852.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159354, exon 1 of 21)	exon (NM_001159354, exon 1 of 21)	560.0	NM_133853	99470.0	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	3.90034934679068	3.27275360388915	3.66639998239581	3.45140943859537	3.47721311721353	3.67687286371121	3.70092642899163	3.66425184023786	0.140675482965398	0.783672662925888	0.9157492895507
Merged-chr16-57230975-2	chr16	57230870	57231070	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_026254, intron 1 of 17)	intron (NM_026254, intron 1 of 17)	496.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	5.22072121155468	5.45505026103179	5.07667364421287	5.47858557130059	5.62212279329508	5.46577533677273	5.86718347039563	5.76662237586087	0.606086666946345	0.0359643504045824	0.188408538512677
Merged-chr7-55910217-1	chr7	55910117	55910317	+	647.0	f0_balb.idr	intron (NM_011370, intron 22 of 30)	L1MC4a|LINE|L1	52276.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	3.23158452263901	3.35220525406007	3.54279576465539	3.20131760711477	2.94977746754449	3.08363912860946	3.16069222293347	3.34236977280092	-0.753533765526365	0.189185537892226	0.488066531391588
Merged-chr7-101548993-4	chr7	101548898	101549098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6804.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	6.77464991432812	7.18977678607912	7.35522723991182	7.12021917389288	7.14503597600862	7.09797870791018	7.18669411847101	7.16292528528349	0.0291778441115049	0.884038979315844	0.956390337098447
Merged-chr11-97850754-3	chr11	97850663	97850863	+	630.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9983.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	2.79574155299552	2.70434327965824	2.85556599258316	2.88639710157697	2.56632695223568	2.70275507967243	2.72465165996005	2.79468769169716	-0.586237761256488	0.362096122870984	0.66735526990214
Merged-chr2-27311802-4	chr2	27311718	27311918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 3 of 29)	MIR3|SINE|MIR	-64515.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	7.05721827379943	6.85347608284645	6.3598579821737	6.74693754600601	6.74586781265577	6.82038699082764	6.99992775787706	6.74498824326472	0.0733480739659645	0.744790353662225	0.899349861357637
Merged-chr7-130867440-4	chr7	130867331	130867531	+	899.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133942, intron 1 of 9)	intron (NM_133942, intron 1 of 9)	1707.0	NM_001346515	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	4.53173140558498	4.3388222362113	4.40913947938539	4.84843737157751	4.43507914079543	4.29940960611634	4.34600043091873	4.40638306892897	-0.439872615105802	0.259267728598514	0.571096665653079
Merged-chr5-124424882-4	chr5	124424790	124424990	+	941.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081203, intron 1 of 31)	CpG	712.0	NM_001359979	243272.0	Mm.23879	NM_145631	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch 1	protein-coding	4.74333982940399	4.89636796087031	4.81859146798328	4.1884942743237	4.85235403946394	5.15814243416678	4.60226949994389	4.77869149693773	0.385701447804029	0.320497398684858	0.632352050768202
Merged-chr12-101958299-4	chr12	101958189	101958389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167914)	promoter-TSS (NM_001167914)	-46.0	NM_001167914	110616.0	Mm.271914	NM_029705	ENSMUSG00000021189	Atxn3	2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3	ataxin 3	protein-coding	8.27964166824834	8.22889525469384	8.1695815921389	7.96865167532118	8.31821818106044	8.53383756893191	8.14316560685091	8.21228433560746	0.190698236478772	0.267402382316271	0.579104699877988
Merged-chr6-124480471-4	chr6	124480371	124480571	+	846.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-12642.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	3.81308412511982	4.20893939402799	3.75463323382164	3.81831938749184	4.10636078266303	4.45977586960714	4.10285387880775	4.20672230653329	0.812680675283195	0.0612487551710956	0.261856632446081
Merged-chr8-73234182-4	chr8	73234085	73234285	+	987.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	119355.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	5.39088244356259	5.0307509627657	5.52866498302189	5.73616554916621	5.37554594619253	5.3484240040645	5.52622360202537	5.133140735494	-0.189744610569943	0.548127194895054	0.797236209191938
Merged-chr7-29303926-4	chr7	29303821	29304021	+	868.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013874)	promoter-TSS (NM_013874)	-84.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	4.06082930931546	4.03334447919715	3.71753463361686	4.24075327578444	4.33232501891914	4.37643238723223	4.39215503091146	4.3711937690826	0.794132068530674	0.0600205159079468	0.258538851474254
Merged-chr11-4240489-3	chr11	4240397	4240597	+	838.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001013365, exon 3 of 3)	3' UTR (NM_001013365, exon 3 of 3)	3712.0	NM_001013365	18413.0	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	4.76132132183974	4.65641345363156	4.62192904642642	5.35059724451513	3.89578736913754	3.9623420810996	4.06075870931917	3.89692403871019	-2.33093209572673	1.96938803228637e-07	7.96019708972806e-06
Merged-chr6-57749312-3	chr6	57749274	57749474	+	809.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2-int|LTR|ERVL-MaLR	46919.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	3.56940077700951	3.57061218368668	3.27019066184413	3.3591442367892	3.6618973230312	3.93426390698348	3.55541129304706	3.39655404842924	0.660816067207869	0.194267687108697	0.494661933916791
Merged-chr2-181274913-4	chr2	181274831	181275031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 2 of 9)	MTEb|LTR|ERVL-MaLR	13035.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	7.50448965584185	7.38731018161856	7.94641291063744	7.6802741361138	7.46088235283634	7.57515602404624	8.01573912279524	7.45252942951738	-0.00078351991304692	0.99710554427159	0.998859677649499
Merged-chr1-36612713-4	chr1	36612598	36612798	+	938.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201365, intron 6 of 9)	intron (NM_201365, intron 6 of 9)	-19366.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	4.40907958442954	4.76729300655862	4.45574504292986	4.21293543308119	4.59814818062269	5.13842418296318	4.60325910522847	4.69889388034047	0.661414333428718	0.0860198370884181	0.319595259636523
Merged-chr19-37018661-4	chr19	37018555	37018755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	92576.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	5.55845956291158	5.80810081043232	5.8586820110563	5.67744540381989	6.96867457095501	6.93982108014401	6.93417681092197	7.01959772458353	1.83304463369879	1.77703748267871e-17	4.24803273902987e-15
Merged-chr8-25091300-4	chr8	25091207	25091407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	10504.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	6.33053168466514	6.64758502171303	6.54211618605585	6.56100745592341	6.44823343483314	6.45048914161552	6.60161598103407	6.61565564097488	-0.0028788596637884	0.989178804109937	0.995658844162507
Merged-chr5-99380400-4	chr5	99380306	99380506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-127479.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	8.60161036504347	8.53898389342973	8.772571372199	8.59118757758666	8.37490703790384	8.4437809785916	8.65522893879981	8.29589264148836	-0.225193189000749	0.158950728307543	0.44613382847802
Merged-chr2-109890845-4	chr2	109890758	109890958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011699)	promoter-TSS (NM_011699)	-20.0	NM_011699	22343.0	Mm.235300	NM_011699	ENSMUSG00000027162	Lin7c	9130007B12Rik|AI303698|AU019331|AW125731|D2Ertd520e|LIN-7-C|LIN-7C|MALS-3|Veli3	lin-7 homolog C (C. elegans)	protein-coding	7.56572482721874	7.37382022811775	7.27102618808021	7.56547444253181	7.56038947791036	7.41483809245856	7.7165499073844	7.61342335962906	0.166113351958574	0.360253080628409	0.665751588636582
Merged-chr5-135898283-2	chr5	135898183	135898383	+	635.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10364.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	2.6630966740621	2.96909238417068	3.04132337403117	2.50656724972665	2.77840582623593	2.97585953824283	2.91564165196737	2.8643705304957	0.341927267435624	0.605096040664096	0.828698063423653
Merged-chr15-39944029-4	chr15	39943912	39944112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172814)	promoter-TSS (NM_172814)	-18.0	NM_172814	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	7.72051522598338	7.75257261074875	7.89686896373711	7.55271650001093	7.90717830777822	7.71502840546634	8.22436857767184	7.5693903090001	0.195016702088726	0.33178849557384	0.642849806093321
Merged-chr8-112034876-4	chr8	112034762	112034962	+	883.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23503.0	NM_020584	57321.0	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding	3.8370373193035	3.84526778933907	3.83755018135635	3.88662777484606	4.59459850267451	4.0729115706755	4.51387285721034	4.18818593139969	1.31175192710282	0.00190936556284424	0.0225608783860707
Merged-chr14-34549503-4	chr14	34549392	34549592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039071, intron 8 of 12)	CpG	-26691.0	NM_030062	78243.0	Mm.117483	NM_030062	ENSMUSG00000021797	9230112D13Rik	-	RIKEN cDNA 9230112D13 gene	protein-coding	5.28072176462054	5.56383595327169	6.21096546919259	5.70455631511402	5.27815624610133	5.49300375952172	5.49695213048028	5.40519032313446	-0.539729061375894	0.0855886239886358	0.318691924700907
Merged-chr7-128728904-4	chr7	128728802	128729002	+	915.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145955, intron 1 of 15)	L1MD|LINE|L1	11527.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	4.93719494452131	4.45205005260035	4.69005810145304	4.84733360773898	4.96358572420551	4.78396008755494	4.41183060152302	4.72548890249738	-0.00600884333899163	0.986942090275753	0.995239569128295
Merged-chr11-79527098-4	chr11	79527002	79527202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033711, exon 2 of 2)	3' UTR (NM_001033711, exon 2 of 2)	-3340.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	7.00961837500833	7.14877817709771	7.09382932206271	7.12251640077826	6.82698286021208	6.97469964373015	6.52489628304693	6.89047020090308	-0.394976326992879	0.047736080359799	0.22536356463024
Merged-chr19-10258534-3	chr19	10258430	10258630	+	830.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 9 of 19)	intron (NM_198114, intron 9 of 19)	-17782.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	3.25930877674947	3.14356494316141	3.14413935656871	3.10981866707035	3.44488689977029	3.12564500532517	3.13311755227065	3.201582929577	0.307083292768777	0.576205392667296	0.813446739194192
Merged-chr18-6515092-4	chr18	6515000	6515200	+	799.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007935, intron 1 of 13)	intron (NM_007935, intron 1 of 13)	1008.0	NM_007935	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	4.0366290942046	4.37933803312074	3.72067988972287	4.15376628085881	4.11629299714342	4.00988884052918	3.7647578314289	3.83279792797799	-0.415803567309291	0.369203610840045	0.673491314105063
Merged-chr13-70659870-4	chr13	70659753	70659953	+	850.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22219.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	3.56597776661401	3.65634811308723	4.08298791581004	4.06015419576206	3.57965660136644	4.07131217276752	3.93124156992844	3.99243061689808	0.0865894656506304	0.860241884658582	0.947128143348069
Merged-chr9-21167831-4	chr9	21167704	21167904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	intron (NM_183408, intron 1 of 14)	2090.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	6.57764767455891	6.44915665267321	6.48058622381018	6.59358983674242	6.62771059216386	6.56917078691978	6.26558000636238	6.74998975738104	0.0537600771642424	0.80563851489343	0.92521045259115
Merged-chr15-5244793-1	chr15	5244693	5244893	+	573.0	f0_balb.idr	promoter-TSS (NM_008965)	promoter-TSS (NM_008965)	-606.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	3.54704877482739	3.26377906447896	3.49269056631201	3.47278367885249	3.50669941075223	3.49091102767186	3.3016511044427	3.99237275558301	0.485550073028041	0.359590989576687	0.665436252718149
Merged-chr9-7222752-4	chr9	7222653	7222853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38248.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	7.62217937567711	7.62491856642693	8.15357536510521	7.66878470710962	7.78309746152161	7.87777349026735	7.89555875654182	7.54577771632057	-0.000619289114062731	0.997517200823463	0.99901897846428
Merged-chr8-119911062-4	chr8	119910894	119911094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009462, intron 1 of 13)	CpG	634.0	NM_001310630	22224.0	Mm.256910	NM_009462	ENSMUSG00000031826	Usp10	2610014N07Rik|UBPO|Uchrp|mKIAA0190	ubiquitin specific peptidase 10	protein-coding	6.41141760695818	6.75312825376225	7.10617423173151	6.24647274167225	6.62750676719359	6.5904494619185	6.67407702664645	6.85496394915662	0.0419242457433819	0.87054823160028	0.951405771688593
Merged-chr5-21412259-4	chr5	21412170	21412370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 1 of 18)	intron (NM_029195, intron 1 of 18)	12407.0	NM_029195	75172.0	Mm.426695	NM_029195	ENSMUSG00000064280	Ccdc146	4930528G09Rik|mKIAA1505	coiled-coil domain containing 146	protein-coding	7.10264454898768	6.73837434103713	6.99527500121757	7.25688195854116	7.16754734184975	7.01138087563805	7.1022150886069	6.81482814921075	-0.0154525487350943	0.942071587900238	0.979058454594117
Merged-chr17-55722456-4	chr17	55722357	55722557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR25C|LTR|ERVK	-9821.0	NR_151542	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	5.65905855138269	5.62422911504442	6.2500420899506	5.7883872979913	5.59052063145719	5.78261431804511	6.14920728926448	5.6289168889178	-0.0766830549558759	0.793971447256046	0.920260968707275
Merged-chr6-72159947-4	chr6	72159852	72160052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36755.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	6.44336114534589	6.48288181021829	6.68632075882549	6.4497953550104	5.91246497280464	6.34270458415104	6.36066079837131	5.98291558408855	-0.540945319804173	0.0231899050803828	0.141091909882602
Merged-chr2-160360154-2	chr2	160360054	160360254	+	892.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6911.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	3.37437174991085	3.48938426616785	3.14761917933449	2.9030559780269	3.17645306408124	3.43699829732163	2.9389055547641	3.14603304893289	-0.219713060046841	0.717996942478986	0.88731515696296
Merged-chr17-26233096-3	chr17	26233003	26233203	+	890.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	B3|SINE|B2	11139.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	3.01068650180175	3.15827133760729	3.0109920380502	2.94236742494567	3.61641045871234	3.61184841839555	3.37414951788009	3.58805156700451	1.9326009676571	0.000295496231879969	0.00500907984972239
Merged-chr4-129081809-4	chr4	129081709	129081909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 7 of 8)	intron (NM_029219, intron 7 of 8)	23538.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	6.76454099015032	7.05680505003058	6.61763296115882	6.56828071097112	6.55570207546861	6.57242359412724	6.67438834558669	6.46293955837672	-0.276674578540978	0.21255218449131	0.517487068679264
Merged-chr19-27429919-4	chr19	27429826	27430026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131940)	promoter-TSS (NR_131940)	-18.0	NR_131940	52874.0	Mm.261027	NM_177474	ENSMUSG00000041360	Pum3	1110069H02Rik|AA675048|D19Bwg1357e	pumilio RNA-binding family member 3	protein-coding	8.55779458000246	8.60920464396165	8.44578269397475	8.6377394426919	8.43281207923371	8.64404464362989	8.65763255341587	8.38224048476563	-0.0447279655873073	0.774138126009333	0.911717423991832
Merged-chr7-66385998-1	chr7	66385898	66386098	+	571.5	f0_c57.idr	intron (NM_146191, intron 1 of 33)	Lx7|LINE|L1	2343.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	3.54856715384441	3.46886480204945	3.49173680388284	3.35240488483737	3.81402932155468	4.0143300185018	3.64130278625304	3.36753190090672	0.853498547993269	0.0881966823499753	0.323971317149955
Merged-chr2-166656353-4	chr2	166656241	166656441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	57491.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	5.28834938154448	5.45523691283747	5.67788658201557	5.3608304069912	5.56230077429267	5.43355422852192	5.55033321255427	5.6251796973065	0.174680386253984	0.524916286979589	0.783127443769653
Merged-chr16-13671920-4	chr16	13671831	13672031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025653)	promoter-TSS (NM_025653)	73.0	NM_025653	67118.0	Mm.223689	NM_025653	ENSMUSG00000022684	Bfar	3010001A07Rik|3110001I22Rik|AI666707|AW107665|Bar|Rnf47	bifunctional apoptosis regulator	protein-coding	7.04439984419608	7.34899356465682	7.02057815590306	7.13078745806555	7.31243561843784	7.10568589856575	7.34462200760695	6.93769428762089	0.062026737752332	0.757309101552034	0.904665679942472
Merged-chr15-38672450-3	chr15	38672360	38672560	+	773.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025494, intron 1 of 12)	intron (NM_025494, intron 1 of 12)	10556.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	3.66178882039905	3.51995907419613	3.45135074469966	3.7543589156854	3.49163093331026	3.31033317343941	3.64680861018535	3.39105815478853	-0.469130300436781	0.357147258394215	0.663379992830089
Merged-chr5-130024412-4	chr5	130024318	130024518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133768)	promoter-TSS (NM_133768)	-37.0	NM_133768	109900.0	Mm.23869	NM_133768	ENSMUSG00000025533	Asl	2510006M18Rik|ASAL	argininosuccinate lyase	protein-coding	7.46296618078094	7.49814692754305	6.99772793805805	7.06510323954434	7.42300493130559	7.62243635676649	7.44564081668163	7.3425824911653	0.255964912564595	0.210456651727095	0.514939122521843
Merged-chr12-4237191-4	chr12	4237102	4237302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001204912, exon 2 of 2)	3' UTR (NM_001204912, exon 2 of 2)	3175.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	6.50280929285989	6.94914274641923	6.48682894027171	6.82885910712155	6.36596790304185	6.5748951981753	6.72980930006563	6.44724830322822	-0.270290178157426	0.239041592649307	0.54953718047565
Merged-chr19-5689684-4	chr19	5689616	5689816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144868)	promoter-TSS (NM_144868)	585.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	7.54813375616261	7.91075398864066	7.07983203125474	6.8828114055261	7.50464111381356	7.58879038444874	7.16429770536389	7.30532852512057	-0.0180982286810218	0.944520335808947	0.980072204069348
Merged-chr2-158413453-4	chr2	158413351	158413551	+	932.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291137, intron 1 of 30)	intron (NM_001291137, intron 1 of 30)	3598.0	NM_001291138	228850.0	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	4.47533736209606	4.64095057562977	4.43047304669247	4.84711615081807	4.37457782412109	4.65224804505317	4.66042190584065	5.06904411272403	0.176341935928489	0.649809369634489	0.852959309296806
Merged-chr9-78522040-4	chr9	78521934	78522134	+	922.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-40310.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	4.79925753422025	4.79805678952111	4.64811148288342	4.77576619797317	4.57279762447792	4.40713621636517	4.9114633160587	4.86638713709421	-0.115924534137469	0.741735091036667	0.898379424940426
Merged-chr15-67788258-3	chr15	67788147	67788347	+	914.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	470609.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	3.89017030761243	4.28583032213304	3.84707886209928	3.84820195462836	2.97295968392799	3.12458609288188	3.07775351156428	3.00581697629569	-4.12465512387525	1.2215485389165e-07	5.15403695622631e-06
Merged-chr2-72980493-4	chr2	72980406	72980606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001018042)	promoter-TSS (NM_001018042)	-60.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	7.81294853695366	8.17435899443841	7.7982319513805	8.02118480907217	8.10846878781599	8.33738698111712	8.23603801986627	8.14830106974668	0.308715078776247	0.0723525102311303	0.289016180803728
Merged-chr19-5705088-4	chr19	5704999	5705199	+	972.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010609, intron 1 of 2)	intron (NM_010609, intron 1 of 2)	628.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	4.82088390712209	4.79685360416257	5.08641543934516	4.70891954607528	4.72480684130496	4.95783145187902	4.86967399172044	4.66223165531605	-0.0921024012221063	0.784928497978313	0.916319510496654
Merged-chr4-6453952-5	chr4	6453835	6454035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	CpG	336.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	5.2580466298503	5.51087811295238	5.00796194311174	5.3773867443009	5.65235306098425	5.26420149766579	5.66693589411858	5.69194661689381	0.476550444051808	0.106879698667542	0.360532205651723
Merged-chr16-18629908-6	chr16	18629756	18629956	+	908.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_213614)	promoter-TSS (NM_213614)	82.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	2.98039547964624	2.99595238841882	2.98073185980555	3.08274229314888	3.07807833049094	3.15118923293416	3.1987918889571	3.04108472358369	0.40835440801281	0.467325488538717	0.746968519290045
Merged-chr13-95888383-4	chr13	95888254	95888454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	B1F|SINE|Alu	3568.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	7.90317203997736	8.07525951119083	7.79265042350416	8.0696482688459	7.70264090110479	7.97788732081427	7.64093066315103	7.67315762377577	-0.284709993521002	0.105665971886178	0.357964790485282
Merged-chr16-17727389-4	chr16	17727285	17727485	+	994.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-4438.0	NM_001040683	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	5.41559136065945	5.00633656328359	5.18392364688221	5.1116266467184	5.56669036246144	5.15352212908526	5.1264043320734	5.04595043584472	0.138325771335596	0.664701383462913	0.861062110279118
Merged-chr19-46186727-3	chr19	46186629	46186829	+	967.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178930, intron 3 of 39)	intron (NM_178930, intron 3 of 39)	34171.0	NM_178930	107338.0	Mm.271620	NM_178930	ENSMUSG00000025224	Gbf1	1700083E03Rik|AI035702|AW049900|mKIAA0248	golgi-specific brefeldin A-resistance factor 1	protein-coding	3.32261806931918	3.85126980542032	3.43849201860625	3.60501011236714	3.45652740540235	3.16639577441743	3.25041577786937	3.38028899914518	-0.859924714442707	0.118537864921215	0.380903881376893
Merged-chr16-91623243-4	chr16	91623147	91623347	+	882.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357351, intron 19 of 21)	intron (NM_001357351, intron 19 of 21)	-4248.0	NM_138664	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	4.33498636678401	4.35390508271243	3.95036400973954	3.72254499033338	5.00931264405234	5.01681024434247	4.88373136863308	4.63181735692799	1.80648130395263	7.29845833064627e-06	0.00020813179708216
Merged-chr7-80044430-4	chr7	80044307	80044507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	18179.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	5.92448951760076	6.03231091535163	5.88270886673503	5.5287630611405	5.59233447415311	5.42625052133697	5.69106052257097	5.55790664753235	-0.44677481134502	0.108641417413762	0.363871045082542
Merged-chr14-21076027-4	chr14	21075926	21076126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243041)	promoter-TSS (NM_001243041)	-126.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	8.65260527543671	8.75039509640999	8.62741306986103	8.76889539550601	8.36914109407579	8.39568622362719	8.57444597784063	8.38086616855073	-0.343238152660327	0.020997229185157	0.132355807312282
Merged-chr1-80614316-4	chr1	80614206	80614406	+	970.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 4 of 55)	RLTR20A4|LTR|ERVK	51046.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	5.42637037110529	5.01911362932066	5.2606182875633	5.38893758743627	5.1998420982488	4.80344714394944	5.37379667721321	4.87967205642048	-0.360829130759619	0.270491429266677	0.582321914036016
Merged-chr9-31042065-4	chr9	31041948	31042148	+	729.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001115130, intron 1 of 5)	MTE-int|LTR|ERVL-MaLR	11404.0	NM_172765	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	3.44288807007996	3.67387299353276	3.38432644167515	3.49022968391145	3.42480360209883	3.43559585628447	3.59082441115057	3.70129595091672	0.119338190133627	0.810477718387733	0.926833751678515
Merged-chr1-164075442-3	chr1	164075347	164075547	+	939.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164059, intron 6 of 7)	intron (NM_001164059, intron 6 of 7)	13371.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	3.75261034285065	3.37370279430404	3.84385407753636	3.77219914711776	3.61384785995839	3.48629574640184	3.42197997437874	3.43244087059619	-0.652932666691195	0.199690615326372	0.501597851159821
Merged-chr2-75832222-4	chr2	75832109	75832309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172666)	promoter-TSS (NM_172666)	32.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	7.32267105511285	7.35483693191614	7.06651283909859	7.45247051371993	7.11885354142231	7.39529756029127	7.19323028406317	6.94456204877567	-0.197715285818033	0.321078973830224	0.632824656919975
Merged-chr16-36665133-6	chr16	36664963	36665163	+	952.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	1014.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	3.76252046800597	3.57300821662816	3.65662101675574	3.6643214130522	3.73908579474431	4.11899795786912	3.69595271348903	3.70883696103185	0.471124994173902	0.310574642656216	0.622648313554358
Merged-chr5-65484127-4	chr5	65484010	65484210	+	969.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133697, intron 1 of 4)	MLT-int|LTR|ERVL-MaLR	8725.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	4.94874003725144	5.21960902912028	4.68014184959947	4.97623836971155	4.83135785983265	5.01539195389058	5.08690526897382	4.71920383224221	-0.113591423155485	0.735657551334402	0.895620853939579
Merged-chr19-34583420-4	chr19	34583298	34583498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010501)	promoter-TSS (NM_010501)	-131.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	5.26425871273373	5.07213789314916	5.17621751613103	4.33731954001674	5.19518791480164	5.1878206173137	5.05550820595148	5.17260870436815	0.307033911926305	0.407396335491782	0.703636793592033
Merged-chr6-145211727-4	chr6	145211622	145211822	+	981.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177222)	promoter-TSS (NM_177222)	575.0	NM_001362057	67636.0	Mm.486359	NM_133688	ENSMUSG00000040370	Etfrf1	4930469P12Rik|AL022899|Ghiso|Lyrm5	electron transfer flavoprotein regulatory factor 1	protein-coding	4.53227096335911	4.51814271275618	4.61413710789981	4.38849108885211	4.54873995686865	4.57732275985269	4.63093090157361	4.92248995202515	0.37338401456213	0.294418374033782	0.606634274221694
Merged-chr15-103240338-4	chr15	103240249	103240449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002885)	promoter-TSS (NR_002885)	-48.0	NR_104427	15382.0	Mm.237064	NM_010447	ENSMUSG00000046434	Hnrnpa1	HDP-1|Hdp|Hnrpa1|hnRNP A1|hnrnp-A1	heterogeneous nuclear ribonucleoprotein A1	protein-coding	7.9259124518904	7.94742028472638	7.53502676163008	7.56344453759627	8.0393956114982	8.118640486487	8.01533502180377	7.74117635265107	0.30377872629155	0.110207466706059	0.366573710612399
Merged-chr11-85131791-4	chr11	85131678	85131878	+	984.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029934, intron 1 of 33)	intron (NM_001029934, intron 1 of 33)	8177.0	NM_001029934	237898.0	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	5.22349627834123	5.215619603455	5.0967188136772	5.13368138292519	5.1183373144123	5.33514570243187	5.07199794791092	5.05927882678566	-0.0353412178175595	0.905209977999281	0.964809994070421
Merged-chr4-150237867-4	chr4	150237735	150237935	+	739.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023119, intron 1 of 11)	intron (NM_023119, intron 1 of 11)	511.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	3.81639678325602	3.80824397757157	4.0555565109055	3.81455010989514	3.91180668887448	3.98897800412727	3.74898322548581	4.00900009385226	0.12905002864427	0.767941862368981	0.909224339615052
Merged-chr14-45231507-5	chr14	45231400	45231600	+	889.8599849999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027518, intron 1 of 6)	intron (NM_027518, intron 1 of 6)	11783.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	3.55324975058618	3.74631081745758	3.95593126168554	3.43375683984308	3.38846848269732	4.03559019021958	3.48074971759502	3.81704744310576	0.0616171484548325	0.906907278074811	0.965476931934715
Merged-chr8-72318986-4	chr8	72318879	72319079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008452)	promoter-TSS (NM_008452)	-83.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	9.08317951098852	9.15406515537273	9.20236064773217	9.11129233861609	9.34696987918197	9.43251316457504	9.63824634598145	9.29860292016423	0.36598609210121	0.0121872005591609	0.0909098300892492
Merged-chr5-117871729-4	chr5	117871625	117871825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 1 of 27)	intron (NM_008712, intron 1 of 27)	4886.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	5.59106166125983	5.59090734094055	5.82231139906918	5.54457771707996	5.82944353895174	6.14936544987656	5.96600090037493	5.72102353167612	0.471677252169541	0.0693256051747927	0.281553394067301
Merged-chr11-59787666-3	chr11	59787576	59787776	+	900.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110894)	promoter-TSS (NR_110894)	-19.0	NM_001290283	194908.0	Mm.344651	NM_183139	ENSMUSG00000043648	Pld6	4933433K01Rik|Gm10|Zuc|mZuc|mitoPLD	phospholipase D family, member 6	protein-coding	3.86611521327272	4.3256447297185	3.97176969459849	4.32010459964709	3.81569899142577	3.81099534816613	4.0514201110681	4.24100819953214	-0.421738564280735	0.353510234921588	0.66029455787456
Merged-chr4-101357527-4	chr4	101357437	101357637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040640, intron 1 of 3)	intron (NR_040640, intron 1 of 3)	-1289.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	5.83357236483861	5.73272424812039	5.67748899284082	6.02389687924511	6.21367361603392	5.96165214597347	6.42855673803832	6.03466083546126	0.526359138846434	0.0408052289385777	0.204238477647073
Merged-chr1-93401746-4	chr1	93401639	93401839	+	988.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207031, intron 20 of 23)	intron (NM_207031, intron 20 of 23)	27843.0	NM_001271884	404545.0	Mm.297411	NM_207031	ENSMUSG00000034107	Ano7	Ngep|Ngep-L|Pcanap5|Tmem16g	anoctamin 7	protein-coding	4.76387431999115	4.90876174727785	5.08413153895668	4.91889610410162	4.58486722155596	4.85986322915563	5.31153365217094	5.08061885875588	0.111032618424487	0.751561427497774	0.902195066080063
Merged-chr16-58509240-4	chr16	58509126	58509326	+	856.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	14200.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	4.06350592812261	3.93985480182469	3.87063651958513	4.09797521258225	3.9097688179447	3.99088752087008	3.85524260585433	4.06163504231758	-0.136537423123511	0.748799979862463	0.901063951017401
Merged-chr3-84135560-4	chr3	84135477	84135677	+	845.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029797, intron 3 of 7)	intron (NM_029797, intron 3 of 7)	20209.0	NM_029797	76915.0	Mm.274829	NM_029797	ENSMUSG00000033752	Mnd1	2610034E18Rik|AI591601|Gaj	meiotic nuclear divisions 1	protein-coding	4.29712461147098	3.80882561195693	4.15979531504922	4.33118933668482	4.47251754269047	4.51113169667487	4.36192786024403	4.20489239208858	0.53008116455319	0.200413828041486	0.502485838102051
Merged-chr3-133583840-4	chr3	133583742	133583942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39452.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	6.18316393178189	5.43360002636118	5.55890746322791	5.8617479785187	6.16115829481826	6.02753539629677	6.01844074335537	6.02465783118854	0.427917206461804	0.119697756429716	0.382930697663104
Merged-chr7-3709996-4	chr7	3709887	3710087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5946.0	NM_029767	76846.0	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	6.42723689371758	6.71658187323377	5.94609706973679	6.15874378387602	6.55115088013122	6.44430692142244	6.03180435289358	6.01308717211614	-0.0803963584571221	0.773648044844397	0.91153238071872
Merged-chr17-23603722-1	chr17	23603622	23603822	+	579.0	f1_c57bl6.idr	intron (NM_001033425, intron 1 of 5)	intron (NM_001033425, intron 1 of 5)	2896.0	NM_001289482	332221.0	Mm.270315	NM_001033425	ENSMUSG00000023902	Zscan10	BC068284|Zfp206|Zkscan10|Znf206	zinc finger and SCAN domain containing 10	protein-coding	3.58253267813743	3.30241427152762	3.23706799438353	2.8942996988865	3.04814808019065	3.09875773314342	3.22413939425748	2.91595920079495	-0.757161475464538	0.22007829086443	0.527812684572905
Merged-chr10-68541860-4	chr10	68541782	68541982	+	884.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028491)	promoter-TSS (NM_028491)	-7.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	4.58656460178036	4.15283433505074	4.90027021374513	4.7397319216036	4.27447709264286	4.40567581371653	4.71320266257493	4.58430417569656	-0.276436762671203	0.492599401061473	0.763627771760488
Merged-chr14-40975308-4	chr14	40975160	40975360	+	945.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8364.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	3.63455745412636	4.07341746139026	3.81923604082447	3.96510012409512	4.1773835777936	4.29660079652552	4.35183751930699	4.21089933599908	0.944091174420297	0.0275842913133177	0.15844272687142
Merged-chr13-89383913-4	chr13	89383766	89383966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44B|LTR|ERVK	-156770.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	6.69525550079397	6.61324364583966	6.49234196647977	5.89442365267808	8.3033453857125	8.15955321414084	8.38331290777618	8.19233894384248	2.45845516117332	1.06090178663487e-28	1.09440475754903e-25
Merged-chr19-29648419-4	chr19	29648311	29648511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081213)	promoter-TSS (NM_001081213)	4.0	NM_001081213	226090.0	Mm.267131	NM_001081213	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|b2b2633Clo|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	7.22024512867766	7.34834457888717	6.66185616647242	7.34367393390344	7.10251566517577	7.28592563766789	7.18531519486964	6.84373693534026	-0.093205306690447	0.682182289122932	0.869682098720609
Merged-chr12-16584243-4	chr12	16584152	16584352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355598, intron 1 of 20)	intron (NM_001355598, intron 1 of 20)	5518.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	6.67629199358537	6.77978629236594	6.81727931196735	6.55471839763118	5.48442136527266	5.84098346024824	5.62860005470357	5.62313058872726	-1.65221868433114	9.26246510798686e-12	8.38795170383456e-10
Merged-chr8-70594308-4	chr8	70594211	70594411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023627)	promoter-TSS (NM_023627)	-170.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	7.38799037882855	7.73056393696733	7.74481047871362	7.42464467451805	7.06530157866525	7.08383113225384	7.09305408165439	7.07473676657957	-0.672874197251974	0.000399172589710746	0.00643112398438688
Merged-chr12-51968120-4	chr12	51968044	51968244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177171, intron 1 of 35)	intron (NM_177171, intron 1 of 35)	3177.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	5.33177374559723	5.89292939285181	5.66738299978925	6.21261179132654	5.85785544630216	5.8958513171756	5.98572714884243	5.76623690541647	0.0591005129442509	0.842659101243885	0.940251336238462
Merged-chr19-12435138-7	chr19	12435054	12435254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7249.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	7.48398950239443	7.87756259914538	8.44750849685062	7.69129161083221	7.38372686022141	7.49970670362895	7.48592591287985	7.11529238754966	-0.716834974417459	0.00281170957987897	0.0303694501041283
Merged-chr1-186834145-2	chr1	186833992	186834192	+	890.43335	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84734.0	NM_026041	67223.0	Mm.289841	NM_026041	ENSMUSG00000001305	Rrp15	2810430M08Rik|5430437H21Rik	ribosomal RNA processing 15 homolog (S. cerevisiae)	protein-coding	2.34202239723518	2.41808757989885	2.26045778878435	2.10237696212358	2.89996041139749	2.67210490110052	2.79689839359267	2.86276454777419	3.34306035466312	1.59867035764452e-05	0.000419276924785479
Merged-chr2-153543189-4	chr2	153543085	153543285	+	804.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-13214.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	4.76475339180145	4.27168555028935	4.09044265215588	3.86454474191041	4.41504053852839	4.26658623770497	3.9171678059788	3.68831245735583	-0.444524310345152	0.380143902131602	0.682564774596403
Merged-chr7-4753060-4	chr7	4752960	4753160	+	956.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183406)	promoter-TSS (NM_183406)	34.0	NR_110411	333182.0	Mm.29625	NM_183405	ENSMUSG00000051811	Cox6b2	1700067P11Rik|BC048670|COXVIB2	cytochrome c oxidase subunit VIb polypeptide 2	protein-coding	5.04251952355705	5.27549957713682	4.84393768198579	4.59623281116044	4.71158825077334	4.55467228086905	4.92334290580251	4.46810630302514	-0.569626999183416	0.131035383690966	0.402944985343208
Merged-chr12-73692521-3	chr12	73692427	73692627	+	665.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 3 of 13)	intron (NM_008856, intron 3 of 13)	107731.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	3.9014296250733	3.61049409955261	3.42046091339727	3.19061304021358	3.79297944343305	3.93158279871616	3.64155036680242	3.8070502779268	0.769042705536395	0.136473400297348	0.410990361962696
Merged-chr5-43235314-4	chr5	43235210	43235410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028417)	promoter-TSS (NR_028417)	44.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	5.41604016862044	5.48056131258608	5.77456613165042	5.60296305846985	5.19459469535164	5.26245779575869	5.7450433682605	5.55272155875015	-0.215542808384494	0.464995966839913	0.745722932051402
Merged-chr11-82015324-4	chr11	82015227	82015427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-20250.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	6.54067967927583	6.74300253064773	6.25919313988254	6.00678886664005	6.60828670025734	6.77874107640785	6.22711539530622	6.25471005954804	0.119987423360209	0.657893294351274	0.857579088863969
Merged-chr4-135981698-4	chr4	135981608	135981808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025411, intron 3 of 5)	L1MA5|LINE|L1	5536.0	NM_025411	66193.0	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	7.03951540037151	6.99682407666111	6.77228333377021	6.9627318735735	6.69346342963593	6.68080240465632	6.64960092183785	6.36843899689309	-0.482564479612555	0.0191908468645156	0.124409620950389
Merged-chr12-31634045-4	chr12	31633933	31634133	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007530, intron 1 of 6)	RSINE1|SINE|B4	564.0	NM_007530	12033.0	Mm.242379	NM_007530	ENSMUSG00000020650	Bcap29	AW208404|Bap29	B cell receptor associated protein 29	protein-coding	4.66651695539045	4.70082139741338	4.85372302262021	4.72627455300761	4.78289923958146	4.7594176080873	4.89717583474182	4.66426086258447	0.0890486156773316	0.788004543485209	0.917932066973263
Merged-chr7-98809592-4	chr7	98809496	98809696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-25516.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	7.6204937095799	7.06573106859541	7.76764793560371	7.76473045447306	7.55520451814109	7.44448255520464	8.0026925659938	7.76998493990989	0.161380995417792	0.475919013851618	0.752603574391689
Merged-chr9-104234010-4	chr9	104233906	104234106	+	954.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 5 of 56)	intron (NM_001359740, intron 5 of 56)	28924.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	5.31787888164566	5.12887494823209	4.93057811720688	5.44185210222951	5.56638901526048	5.33428924796301	5.1313289357747	5.98359683315765	0.552944131760036	0.100448328395278	0.347921492320569
Merged-chr7-110109342-4	chr7	110109231	110109431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12728.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	6.42020781894805	6.68875644414516	6.61817722277821	6.44896542792562	6.51497519029883	6.57996627171101	6.25841853391932	6.61345682583055	-0.0669141803491421	0.759602151482768	0.905741537670396
Merged-chr4-62600706-3	chr4	62600611	62600811	+	858.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019492, intron 3 of 19)	intron (NM_019492, intron 3 of 19)	-18961.0	NM_001081650	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	3.35740731428573	3.36002317634688	3.6375268144697	3.78607782257157	3.51464047279921	3.70156258954428	3.67131403611131	3.47479185343848	0.0922328360475621	0.857884823789612	0.946450198321422
Merged-chr4-53104680-3	chr4	53104556	53104756	+	842.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 7 of 49)	intron (NM_013454, intron 7 of 49)	55239.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	3.64687913637158	3.31406243445668	3.54137676631287	3.657746735221	3.70898181349489	3.27162302895217	3.63230030462702	3.83358720281102	0.252064147171198	0.626808902807305	0.84078253767509
Merged-chr1-149923842-3	chr1	149923752	149923952	+	743.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 2 of 17)	intron (NM_008869, intron 2 of 17)	-1413.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	3.73314457755076	3.49847441734291	3.78156746988135	3.89370373042118	3.46518167956534	3.57796549013215	3.66872013323084	3.39987442496249	-0.677821589209707	0.171582025359053	0.464922036736535
Merged-chr11-97310144-4	chr11	97310050	97310250	+	989.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-5566.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	5.84344763662169	5.80967000167797	5.51326004658861	5.15318052209242	4.93822870178086	5.05142361212916	4.57186003063516	4.98479687995835	-1.29607794852656	0.000212206139764452	0.00382492297348543
Merged-chr1-138158591-4	chr1	138158522	138158722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	16504.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	6.68515827123998	7.29546354422836	6.96770911757961	6.54206965412731	6.64818564313819	6.89269032408614	6.4231625283506	6.00351452223434	-0.526197125501247	0.0603991822757185	0.259595036241976
Merged-chr5-137074357-4	chr5	137074273	137074473	+	782.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2101.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	3.8159752425425	3.8394477012359	3.65159127180834	3.53127058782813	3.70284534260642	4.30188489321999	3.69416446612591	4.0057051396966	0.676070592282048	0.158356016111829	0.445201946078833
Merged-chr19-11055840-4	chr19	11055756	11055956	+	935.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-5290.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	4.68313567772267	4.65919547890431	4.25693835857788	4.15651038537408	4.73112142325229	4.92417835183635	4.13503384259279	4.56697435356245	0.375490449065941	0.370071129917203	0.674242166386213
Merged-chr19-10833828-4	chr19	10833742	10833942	+	857.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-3784.0	NM_009852	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	4.20125704984401	4.46843744547833	4.63770182046263	4.49772036541963	4.54170169749075	4.56803204568615	4.61573278813337	4.4777763937496	0.196854358569564	0.589332099354724	0.820451993036494
Merged-chr1-85989213-4	chr1	85989061	85989261	+	916.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28106.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	3.80030801656612	3.29311612610878	3.53603293158641	2.6395450002778	3.83879516784224	3.92665705978977	4.00064563936873	3.53399917702651	1.30628891893215	0.0520744611110276	0.237572623216372
Merged-chr10-14678494-3	chr10	14678389	14678589	+	944.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025418, intron 4 of 7)	intron (NM_025418, intron 4 of 7)	27000.0	NM_025418	66201.0	Mm.227983	NM_025418	ENSMUSG00000019868	Vta1	1110001D18Rik|1110059P08Rik|AU040813|C85340|LIP5|SBP1	vesicle (multivesicular body) trafficking 1	protein-coding	4.4579576866996	4.34437597364947	4.79043014458922	4.92756108013264	4.15410443363809	4.3570653071866	4.55757513552589	4.12188784085697	-0.82489066716146	0.0438529146234076	0.21331282785345
Merged-chr3-129430685-3	chr3	129430586	129430786	+	844.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2987.0	NR_033594	435755.0	Mm.430561	NR_033594	ENSMUSG00000105712	Pou5f1-rs4	EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d	POU domain, class 5, transcription factor 1, related sequence 4	pseudo	3.55318732305537	3.37398122138208	3.44245814085772	3.5633856938103	3.32675012730541	3.557738763769	3.48564438613387	3.83619121431129	0.228988594350209	0.653242391868849	0.854997557892684
Merged-chr6-137694542-4	chr6	137694420	137694620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR24|LTR|ERV1	-40562.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	5.4096010532303	4.88085873302775	5.17716284851412	5.5770509971784	5.19296257644504	4.60824314911891	5.30130055335125	5.35237018696863	-0.274328655878824	0.444943596955939	0.73115209509395
Merged-chr7-64287593-4	chr7	64287491	64287691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172742)	promoter-TSS (NM_172742)	-79.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	8.72716908256042	8.80920568702948	8.53491916215946	8.79885997491982	8.89370117844008	8.94019647644034	8.98023109994268	8.7230060271262	0.202218392027522	0.185440658536244	0.483393181883342
Merged-chr18-12972214-4	chr18	12972098	12972298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008378, exon 1 of 11)	5' UTR (NM_008378, exon 1 of 11)	275.0	NM_008378	16210.0	Mm.8154	NM_008378	ENSMUSG00000024423	Impact	E430016J11Rik	impact, RWD domain protein	protein-coding	6.88473160994658	7.28102364699741	6.78753487734039	6.72210740683207	7.06590360371262	7.10238802637592	6.81009124748199	7.04598239742488	0.108791373531104	0.619131407143486	0.83635379998987
Merged-chr16-18343988-4	chr16	18343901	18344101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138583)	promoter-TSS (NM_138583)	-69.0	NM_001359111	27883.0	Mm.265990	NM_138583	ENSMUSG00000013539	Tango2	D16H22S680E|T10	transport and golgi organization 2	protein-coding	7.98941518865989	7.81139504186777	7.91471294606018	8.13622316887616	7.6166630347651	7.87493213582092	8.12106566504878	7.71725262972565	-0.169955463487508	0.365578588314711	0.670295715323899
Merged-chr3-89418444-4	chr3	89418349	89418549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016904)	promoter-TSS (NM_016904)	-102.0	NM_011368	20416.0	Mm.86595	NM_011368	ENSMUSG00000042626	Shc1	Shc|ShcA|p66|p66shc	src homology 2 domain-containing transforming protein C1	protein-coding	8.68307622010078	8.91384858396941	8.64450452314001	8.64366894972267	8.69206733781774	8.76225737520369	8.73727862066643	8.62082728463199	-0.0273397491636188	0.855933973181533	0.945801681068115
Merged-chr13-85505476-2	chr13	85505376	85505576	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-215990.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	3.00763135814369	3.01151135853406	3.28514825949333	2.93149449156639	3.1662607397358	3.29447407356239	2.72783523183186	2.73362389012463	-0.226396087673169	0.730718508938105	0.893244019160978
Merged-chr17-10371597-4	chr17	10371506	10371706	+	939.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47004.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	4.69820438943738	4.97352212398445	4.49342988015745	4.61325132700698	4.72389042019806	4.79382843788064	4.59934311187271	4.49063636185478	-0.0992127338087059	0.781621917578652	0.915005287096539
Merged-chr9-25481527-4	chr9	25481437	25481637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026189)	promoter-TSS (NM_026189)	-60.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	8.11952893375691	8.40350004247627	8.44037682381732	8.30410360833743	8.40992714702934	8.16843846035801	8.60036675505612	8.38353359561577	0.0993608685344294	0.557954888158655	0.802948476800432
Merged-chr1-55419138-4	chr1	55419031	55419231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	13185.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	6.18419654348616	6.14432931816919	6.61108303570934	6.78690222616636	6.36119717180342	6.05827975432078	6.71870603960717	6.73485281191435	0.0351250288662011	0.898696951968938	0.962303043708153
Merged-chr19-53477463-2	chr19	53477363	53477563	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12667.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	3.19934838774307	3.10410821142675	3.15088721782704	2.93443098897283	2.82028286875249	2.53979455566974	2.51313418846353	2.51749125895837	-2.49241990556092	0.00205582569657159	0.0238713894382169
Merged-chr1-172402868-2	chr1	172402768	172402968	+	915.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	26337.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	2.19627816798132	2.51412670912276	2.27478680563456	2.42976832378219	2.40867284019859	2.65493791876031	2.53988276166616	2.60845558279223	1.02866442609536	0.164507123896746	0.454753682544816
Merged-chr18-9444976-4	chr18	9444866	9445066	+	797.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026484, intron 1 of 9)	MTC|LTR|ERVL-MaLR	5188.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	3.54739860493189	3.68420893834913	4.01845339379776	3.9007146653994	3.82639808993681	3.66487078055457	4.04285434517912	4.01591968812595	0.256388665621672	0.585055315993236	0.817984533677726
Merged-chr4-134929429-1	chr4	134929329	134929529	+	581.0	f0_c57.idr	Intergenic	Intergenic	-1551.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	3.52843334994379	3.29710543566017	3.35606937602805	3.29741122178939	3.48943718111529	3.75178513153361	3.28184009962931	3.85708495960092	0.800357174485073	0.123355469755123	0.389477432015077
Merged-chr19-7494373-4	chr19	7494266	7494466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146091)	promoter-TSS (NM_146091)	-72.0	NM_146091	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	7.90576999812151	8.31157086285348	7.97715374059665	7.72588352083287	7.88628013052418	8.18830188129732	7.71624403093094	7.69882124962272	-0.139610637980896	0.49545240073458	0.765765670681316
Merged-chr16-10695173-3	chr16	10695073	10695273	+	809.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177562, intron 21 of 22)	intron (NM_177562, intron 21 of 22)	90363.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	3.63900461665193	4.1940641882735	4.03526059371527	3.97549522417332	4.03465046975381	3.6357606002278	3.6257577126337	3.2380488528581	-0.875329401864923	0.118495190622097	0.380852938376694
Merged-chr10-93567269-4	chr10	93567183	93567383	+	980.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359749, intron 5 of 13)	intron (NM_001359749, intron 5 of 13)	12402.0	NM_001359749	237465.0	Mm.477086	NM_175488	ENSMUSG00000036168	Ccdc38	4933417K05Rik	coiled-coil domain containing 38	protein-coding	4.99640716247994	5.45592004293675	5.4994495503573	5.76660312756256	6.11854185744841	4.96478633429175	5.67470516190718	5.49557033297	0.291592613256902	0.428647685263876	0.71961368508163
Merged-chr1-74390776-4	chr1	74390676	74390876	+	923.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153088)	promoter-TSS (NM_153088)	-833.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	4.27053897005855	4.40684053082644	4.45081913237189	4.23619592108786	4.6777541778569	4.44699036907126	4.58643366259217	4.52906321571588	0.536988546686765	0.139267991084246	0.414926442453497
Merged-chr13-37346732-4	chr13	37346685	37346885	+	828.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	1440.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.94531376018024	3.74375671706316	3.51880673489022	3.65824760173077	3.89965012166788	3.69787889728637	4.05627410398826	3.84933170148806	0.473870565130391	0.303468367055114	0.616088188202829
Merged-chr17-57059568-3	chr17	57059486	57059686	+	924.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025877, exon 1 of 10)	exon (NM_025877, exon 1 of 10)	277.0	NM_025877	66972.0	Mm.23720	NM_025877	ENSMUSG00000046329	Slc25a23	2310067G05Rik|SCaMC-3	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23	protein-coding	3.19721710965015	3.25536482864904	3.31937716163805	3.5243782069865	3.10877691332183	3.59876558147765	3.3631113003729	3.42880878624475	0.138825558598396	0.801564720030817	0.923467219252441
Merged-chr16-65549132-4	chr16	65549019	65549219	+	969.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026879, intron 2 of 5)	CYRA11_Mm|Unknown|Y-chromosome	13578.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	4.74965556071334	4.58301425808573	4.62900972955355	5.10120625459821	4.83916240511656	5.03298286925336	4.72838275552988	5.02456569961752	0.209746238774355	0.55796565784154	0.802948476800432
Merged-chr14-20828576-5	chr14	20828480	20828680	+	935.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8082.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	4.0466950143737	4.41439090593277	4.31425098425088	3.5287462728167	4.48100493175872	3.83433542884344	3.92827988104925	4.18504448254412	0.0524878836810821	0.917808595371587	0.969728921891019
Merged-chr4-58613242-4	chr4	58613144	58613344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59753.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	5.89361930034616	5.95260807809133	5.7413917127297	6.37899608423676	6.31668088513617	6.04747211556782	6.16173445291496	6.1504715705607	0.212556630394961	0.425065336041913	0.716654639114296
Merged-chr5-115508129-7	chr5	115507972	115508172	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	1396.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	3.48356618883189	3.355932014471	3.6939610625408	2.91634619737683	3.71081448077572	3.35024068985358	3.7243555871717	3.73909428197618	0.831529948477011	0.146655487824517	0.427136583651593
Merged-chr10-108140931-4	chr10	108140814	108141014	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21486.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	5.67103074674294	5.00914966969237	5.18532956014054	5.55791210183124	5.07425290128064	4.73502415097624	5.28032125667399	5.11663345358475	-0.604037779914653	0.0762154378733131	0.298247866332052
Merged-chr1-16696790-3	chr1	16696705	16696905	+	778.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159711, intron 2 of 4)	intron (NM_001159711, intron 2 of 4)	8349.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	3.30990491607302	3.91179700731362	3.68390574512064	3.87627984860644	3.07180320426449	3.2944952121402	3.10191200755854	3.10978372166103	-2.18163188152639	0.000265081760350238	0.00457830485138179
Merged-chr9-72965523-4	chr9	72965421	72965621	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163725, intron 4 of 6)	B1F|SINE|Alu	6736.0	NM_001163725	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	4.33219478152408	4.6064289944675	4.33284590070097	4.63353733254288	4.87490254224668	4.20389526410769	4.26737160031368	4.54288960229718	0.0507658075197625	0.901367401566272	0.963342914941175
Merged-chr1-36437423-3	chr1	36437312	36437512	+	886.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310517, intron 4 of 8)	intron (NM_001310517, intron 4 of 8)	7859.0	NM_001013374	214895.0	Mm.287854	NM_001013374	ENSMUSG00000001143	Lman2l	A630028F14Rik|VIP36-like|VIPL	lectin, mannose-binding 2-like	protein-coding	3.9435085921336	3.83801931679177	3.94407195725452	4.28573474098678	3.84874783674382	3.84423448268885	4.27449050699585	4.084742593373	-0.0203510791482327	0.964394672068059	0.987323423800195
Merged-chr7-35081182-4	chr7	35081075	35081275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24609.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	6.72234378391802	6.18846290809258	6.59223001746586	6.44287561385308	6.46766776372265	6.65552008810313	6.46312938167974	6.35139462001357	-0.0100588461070698	0.96495624119985	0.987600044464378
Merged-chr4-129875597-2	chr4	129875497	129875697	+	846.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30629.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	3.12383159776176	3.00564802224781	2.9530686983924	2.84438141307753	3.02525089071136	2.71031313120503	3.11132928884365	2.82365808912101	-0.208238121265253	0.73798218077597	0.896580162228794
Merged-chr4-133092799-4	chr4	133092637	133092837	+	860.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37896.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	4.18172039394032	3.96913956764892	4.60435738051792	4.05351929863926	4.01305293595662	4.11061436525874	3.91633019874536	4.38898502058432	-0.252836757514228	0.57079774831474	0.810205083691013
Merged-chr7-67460036-4	chr7	67459943	67460143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87185.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	6.92808758409367	6.96686750547407	6.84941835817879	7.03056372192388	6.77815321083295	6.58899570974873	7.07341405313444	6.87174383853625	-0.155608420100843	0.446333707645695	0.732085606427158
Merged-chr5-8346549-4	chr5	8346440	8346640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	21620.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	6.79915403121123	6.41319502621826	6.54654946845192	6.7778371595111	6.8272317611421	6.75554100866351	6.47976369905339	6.50837038073178	0.010473960435918	0.962612595196944	0.98666971636857
Merged-chr15-64240924-3	chr15	64240821	64241021	+	904.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	71752.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	3.45295689025612	3.13032390828424	3.2332758834109	3.50925698123668	3.15816966470098	3.34410104249954	3.43919231075812	3.23170163669304	-0.202149467231291	0.713014983368216	0.88517822449056
Merged-chr6-87496362-4	chr6	87496274	87496474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175476)	promoter-TSS (NM_175476)	-47.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	6.08729240209387	6.29012236665746	6.06697679314848	6.24609195232376	6.57439729315771	5.90242919947986	5.92396194560666	6.31565692942822	0.0680996111971616	0.796363982931072	0.921103730429807
Merged-chr5-146824739-4	chr5	146824647	146824847	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8143.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	5.1052751050004	4.93232371075774	5.00609518008604	4.79203166282586	5.28324620021399	5.24659095914423	5.17299548796929	4.81660086564584	0.381280543410491	0.233641121817645	0.543386420841631
Merged-chr1-52858393-3	chr1	52858294	52858494	+	740.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146108, intron 2 of 13)	RLTR13C2|LTR|ERVK	13356.0	NM_146108	227095.0	Mm.222063	NM_146108	ENSMUSG00000041426	Hibch	2610509I15Rik|HIBYL-COA-H	3-hydroxyisobutyryl-Coenzyme A hydrolase	protein-coding	3.86605337050279	3.91582515971978	3.65188410167992	3.42812533012521	3.83974860859746	4.17564124867281	3.74829848815726	3.91279598542966	0.598288696766859	0.209645298667105	0.514168095492496
Merged-chr1-155425978-4	chr1	155425878	155426078	+	836.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8534.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	3.76752012413595	3.3871156055238	3.18224961098746	3.77688936013512	3.80125174101508	3.73546716925191	3.70419780292225	3.5055991069174	0.402785175081831	0.453924767351724	0.73779282218003
Merged-chr5-143975539-4	chr5	143975474	143975674	+	832.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	39279.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	3.5744463990667	3.80072376011801	3.51609783764612	3.63816877777145	3.71535280834352	3.69156007229052	3.94996639017547	3.73479799313208	0.412432677397324	0.375387271703732	0.678388570152588
Merged-chr3-34069139-4	chr3	34069037	34069237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001113188, exon 17 of 17)	3' UTR (NM_001113188, exon 17 of 17)	12217.0	NM_001026211	67713.0	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding	5.8908708755055	5.30690549740705	5.8713317642799	5.46928992809365	5.28447438441481	5.51254966062564	5.42917972737868	5.45268226685284	-0.394563100815368	0.18508398492961	0.482885894117172
Merged-chr3-121371630-4	chr3	121371532	121371732	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54909.0	NM_028044	71994.0	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	4.86833270510183	4.88387547751942	5.23866288077793	4.87267358590143	5.40464595870003	4.74785439382421	5.15329815029145	5.34629650999925	0.437614006611728	0.191442800550433	0.490854206495116
Merged-chr15-41784327-3	chr15	41784235	41784435	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-4660.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	4.96097523113908	4.76656875402014	5.08841411942129	5.54438020524447	4.43441218717447	4.46354268734548	4.83429678926183	4.52782654041821	-1.1717192906458	0.00218878938439689	0.0250636807580415
Merged-chr12-111437716-4	chr12	111437596	111437796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4965.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	7.15511551870256	7.38844699195987	7.32706841363944	6.91637069093421	7.54938799453585	7.16263883371496	7.0380262315389	6.81237704401617	-0.0311458980862597	0.894114793013118	0.960481560907683
Merged-chr2-80176652-4	chr2	80176610	80176810	+	800.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	-47052.0	NM_001355140	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	2.34863295649013	2.43887708521078	2.64233864653095	2.40906452681183	2.85543289010994	2.7499759181145	2.75716850198986	2.9345772599398	1.87836227148399	0.00537450901720446	0.0501080770640393
Merged-chr6-125342350-4	chr6	125342247	125342447	+	923.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011324, intron 7 of 11)	L1M4|LINE|L1	-7376.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	3.82596281765576	3.9484706714823	4.05823899870631	4.02891332976053	4.38113162834315	4.67609052080379	4.55683768301145	4.71096915910824	1.45582819056185	0.000262472783609515	0.00454342175694107
Merged-chr13-21172811-3	chr13	21172709	21172909	+	962.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7122.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	3.90720133027472	3.58029602089145	3.68267012180503	3.72788016875754	3.27923794779084	3.17621691272286	3.39658669209595	3.68045901748472	-1.11292293255701	0.0369116056994316	0.191384847179476
Merged-chr3-100568771-4	chr3	100568712	100568912	+	768.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010763, intron 12 of 12)	intron (NM_010763, intron 12 of 12)	-79620.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	3.01264678774801	3.14132809993418	3.31441533088344	3.19350083158647	2.96145822854449	3.42868424785723	3.13074564843076	3.36510759689103	0.219670498134915	0.701360227841335	0.87967443506783
Merged-chr5-3359286-4	chr5	3359193	3359393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	15400.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	5.68514178028993	6.03232954939817	6.0407443022811	5.8918398756326	6.14582173842775	5.6601460110415	6.19951254018444	5.85984050386064	0.117353259854289	0.655459176837474	0.856085154466486
Merged-chr8-4238007-3	chr8	4237871	4238071	+	903.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164172)	promoter-TSS (NM_001164172)	-769.0	NM_011944	26400.0	Mm.3906	NM_011944	ENSMUSG00000002948	Map2k7	5930412N11Rik|JNKK 2|Jnkk2|MAPKK 7|MEK 7|Mapkk7|Mek7|Mkk7|Prkmk7|sek2	mitogen-activated protein kinase kinase 7	protein-coding	3.48777741967564	3.40412453445462	3.81722259400514	3.29168918821492	3.36282085993238	3.15745852432204	3.30440473572815	3.5892270552768	-0.491593657993553	0.372371286912734	0.676179108629457
Merged-chr3-37886969-2	chr3	37886869	37887069	+	813.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11844.0	NR_040559	626410.0	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	2.97272045200351	3.17555341871403	2.90750428834098	2.90100473516903	3.16135913593934	3.1449853262864	3.02476621955427	3.15030693886563	0.538729437106656	0.344112114617013	0.652610656810439
Merged-chr11-118212865-4	chr11	118212772	118212972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001112700)	promoter-TSS (NM_001112700)	-130.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	6.83667243586223	6.56421561821553	7.26185718507463	7.27552668050603	6.27230336610116	6.02465431900312	6.55496606977411	6.56775931459696	-0.932441149588669	0.000344626858166133	0.00567828591143684
Merged-chr7-16311705-4	chr7	16311658	16311858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133234, intron 1 of 3)	intron (NM_133234, intron 1 of 3)	2175.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	5.90532628435679	5.70341657328144	5.98787058742884	5.54403284202334	5.48213950765795	5.44077154479191	5.69629486199304	5.51009334739718	-0.412781377679368	0.136164204155742	0.410613938350064
Merged-chr15-80256009-4	chr15	80255899	80256099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009716, intron 1 of 2)	CpG	815.0	NM_009716	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	7.29336654781611	7.74625324415343	7.30534861925813	7.22772269226945	7.52283061528738	7.67043041189192	7.37109622525806	7.33188493159701	0.0973390838743792	0.633195817668528	0.844502334797882
Merged-chr1-24681291-4	chr1	24681208	24681408	+	891.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310483, intron 1 of 15)	intron (NM_001310483, intron 1 of 15)	2390.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	3.73805287735112	3.76127156084651	4.18891205214834	4.27485454098489	4.29550348505976	3.66476499914823	4.1698143565288	4.14338720878875	0.184958037771518	0.703689627737774	0.880845147062817
Merged-chr10-19014235-10	chr10	19014061	19014261	+	956.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009397, intron 1 of 8)	(CAAAA)n|Simple_repeat|Simple_repeat	1249.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	5.39702252047006	5.87121738827997	5.06223690929534	4.78182075186304	5.22501212114925	5.01483365661534	5.0024136726901	4.91122455335502	-0.540164159409149	0.154118290730989	0.439291439049379
Merged-chr5-114100241-4	chr5	114100138	114100338	+	962.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033202)	promoter-TSS (NM_001033202)	-95.0	NM_001033202	100756.0	Mm.240421	NM_001033202	ENSMUSG00000029592	Usp30	6330590F17Rik|AI851327|D5Ertd483e	ubiquitin specific peptidase 30	protein-coding	4.98559713900899	5.31091519442275	5.05609006627978	4.5658526438653	5.28531613061836	5.38738502763828	4.96234621536347	5.05263743708645	0.364943194574139	0.29624605644379	0.60825851823384
Merged-chr8-69901690-4	chr8	69901579	69901779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032004)	promoter-TSS (NM_032004)	-505.0	NM_032004	83984.0	Mm.432504	NM_032004	ENSMUSG00000047654	Tssk6	Sstk|TSK-6|TSSK-6	testis-specific serine kinase 6	protein-coding	7.36248613177322	7.59651818872375	7.22416753233551	7.36374434450489	7.58805169116378	7.54086822876992	7.1652398599577	7.50239628853928	0.0901669952568565	0.641010797863239	0.848560720572429
Merged-chr2-102701691-4	chr2	102701577	102701777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 1 of 10)	intron (NM_001077514, intron 1 of 10)	-4761.0	NM_011393	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	6.87348742194314	7.42974779699611	7.761309572329	7.18714036051377	6.82440959190672	6.91895571779431	7.08287471316886	6.85556994235877	-0.586261472459246	0.0128951121345775	0.0944982175051054
Merged-chr11-121795109-4	chr11	121794976	121795176	+	843.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35142.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	3.6585776107428	3.69859241064437	3.48579091430535	3.20004880663802	3.86698074596016	4.11618691390384	3.58948586065241	3.70996651734717	0.981267992640034	0.0535171821995464	0.241461683049031
Merged-chr4-33099331-4	chr4	33099230	33099430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33226.0	NM_008075	14408.0	Mm.14116	NM_008075	ENSMUSG00000028280	Gabrr1	GABA-C	gamma-aminobutyric acid (GABA) C receptor, subunit rho 1	protein-coding	6.26647933364521	6.69709150709257	6.68949201287928	6.84469981369797	6.54923376593641	6.38424505198692	6.62648027872374	6.02140152376683	-0.337457605466521	0.176333079743184	0.471307205534908
Merged-chr14-103929593-4	chr14	103929489	103929689	+	916.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-85113.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	4.65519092983929	4.45534411606439	4.93637358658778	5.14342559616482	4.70185178315015	4.31783748374627	4.67247374363947	4.4403312864405	-0.615459072854723	0.116265638465346	0.377232779738281
Merged-chr11-30024769-5	chr11	30024697	30024897	+	758.776184	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_146016, exon 2 of 42)	5' UTR (NM_146016, exon 2 of 42)	1236.0	NM_146016	237711.0	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	3.6654869952644	3.56477479117675	3.45297032048801	3.4303702642618	3.46381968230653	3.68059498107484	3.38174451749325	3.61388001494284	0.0365797005836026	0.940956746827162	0.978676631829834
Merged-chr3-142881522-1	chr3	142881422	142881622	+	1000.0	f0_balb.idr	promoter-TSS (NR_152127)	promoter-TSS (NR_152127)	482.0	NM_178654	109333.0	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding	5.19648742164487	5.22000534018975	5.72460591169434	5.38897861915463	5.42577617035159	5.80272410164397	5.27040895469746	5.49800206152416	0.194453048482911	0.520853749036332	0.78104470479822
Merged-chr9-30427043-4	chr9	30426932	30427132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028874)	promoter-TSS (NM_028874)	-297.0	NM_028874	102607.0	Mm.35084	NM_028874	ENSMUSG00000031993	Snx19	3526401K03Rik|AI195321|AI848208|mKIAA0254	sorting nexin 19	protein-coding	7.08871955595293	6.85960500576757	7.23793427236356	7.42040810094476	7.17380359742652	7.05795312268463	7.49576333389829	7.13236484484855	0.0657292624502984	0.761095743514918	0.906504042208493
Merged-chr15-80088832-4	chr15	80088733	80088933	+	946.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2501.0	NM_009303	20972.0	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	4.85165252725494	5.09953150576172	4.68953434977207	4.47197438577887	5.31157944782832	4.78243478730924	5.62001761574679	4.8492055118367	0.776493505264686	0.0408444060245578	0.204367281251642
Merged-chr3-79088650-4	chr3	79088548	79088748	+	864.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001310536, exon 12 of 24)	exon (NM_001310536, exon 12 of 24)	56239.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	3.87662270464979	3.96107331238074	4.0154389676499	4.01107536088587	3.87461584662681	3.30474203129362	3.90799252240883	3.72009772562319	-0.690124425296957	0.16359983702326	0.453373353678186
Merged-chr5-136642401-3	chr5	136642309	136642509	+	859.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50737.0	NM_001303019	59310.0	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	4.03835307694604	4.18010526095664	3.94810025030575	3.75226506851305	3.76376407469454	3.68531493093147	3.67407749568484	3.89777625554654	-0.638907779064282	0.167719267524851	0.459674907623916
Merged-chr8-94179855-2	chr8	94179755	94179955	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013602, exon 2 of 3)	exon (NM_013602, exon 2 of 3)	766.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	5.07211474260625	5.23572315095112	5.70459061717279	5.01762104962817	5.53440690237751	5.17823786929581	4.85887062703232	5.41075817263891	0.0039129774374992	0.991024554811142	0.996597063998845
Merged-chr11-51820155-3	chr11	51820063	51820263	+	778.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 11 of 12)	B3|SINE|B2	37318.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	3.4235319491653	3.53789100391436	3.36416835082368	3.17700803326819	3.85722887519963	3.65325977804024	3.29037323953789	3.63688024555277	0.849928414604663	0.103996488953097	0.354417604481111
Merged-chr4-150227407-4	chr4	150227288	150227488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-9809.0	NM_023119	13806.0	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding	6.18067456955058	5.88832446957135	5.97221396335863	5.87724086692333	6.12939351075338	6.00555892075993	6.42463077855408	6.32285160358526	0.393709780673545	0.10472932387158	0.355892702370628
Merged-chr2-154264640-4	chr2	154264519	154264719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175167, intron 6 of 14)	intron (NM_175167, intron 6 of 14)	6740.0	NM_175167	71425.0	Mm.389341	NM_175167	ENSMUSG00000067998	Bpifb9a	4833413D08Rik|AI413838	BPI fold containing family B, member 9A	protein-coding	5.95222127916118	5.82538185642536	5.99601010167271	5.42697349359771	5.87618646844107	5.8112990775906	6.10352477097148	6.03301036453737	0.262015307026467	0.337013528476972	0.646885264386813
Merged-chr1-171665699-2	chr1	171665599	171665799	+	753.083313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-12662.0	NM_144539	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	2.92059744042937	2.822543508019	2.98232647082703	2.51940295912285	3.02840543714493	2.9668302512777	2.78027841783007	3.24957798287139	0.881561967936253	0.174052003612945	0.468316608647683
Merged-chr11-76590024-4	chr11	76589902	76590102	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12263.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	5.31620947911386	5.53691541449332	5.0837917241677	4.86571842667582	5.82375853001566	5.60727654800319	5.22865359316329	5.34351409978597	0.561680013357579	0.0888976321298468	0.325381910896163
Merged-chr10-13184282-4	chr10	13184140	13184340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181470, intron 4 of 10)	intron (NM_181470, intron 4 of 10)	-6217.0	NM_029172	75122.0	Mm.159433	NM_029172	ENSMUSG00000019815	Zc2hc1b	4930519B02Rik|Fam164b	zinc finger, C2HC-type containing 1B	protein-coding	5.74426080977029	5.66159585831128	5.98352118706696	5.93893874627762	5.63413102340241	5.32927796511536	5.39370170546026	5.50598290417094	-0.608966711389552	0.0250933011157733	0.148768622365453
Merged-chr9-116123755-4	chr9	116123644	116123844	+	888.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 3 of 6)	Lx9|LINE|L1	51619.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	4.74825529180757	4.43478238465405	5.01482536227438	5.0666028145174	4.47086457505916	4.49466933169157	4.83182699724006	4.50242920918835	-0.569973972927719	0.132401507094864	0.405202806496917
Merged-chr9-35634048-4	chr9	35633960	35634160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14142.0	NM_001167592	100312956.0	Mm.475850	NM_001167592	ENSMUSG00000094995	Pate3	Gm17365|Pate-dj	prostate and testis expressed 3	protein-coding	5.76016978872012	5.48970267246955	5.6515628987214	5.77124507596177	6.52998486179796	6.23944676081134	6.4041323367944	6.13974164909765	1.03748006329792	2.78482647486599e-05	0.000680854273527518
Merged-chr3-18055591-4	chr3	18055496	18055696	+	851.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021560, exon 1 of 1)	exon (NM_021560, exon 1 of 1)	1271.0	NM_021560	59058.0	Mm.149938	NM_021560	ENSMUSG00000025128	Bhlhe22	Beta3|Beta3a|Bhlhb5	basic helix-loop-helix family, member e22	protein-coding	4.00545021282291	3.71510424665488	3.86222769296033	4.11787460555853	3.5589696711517	3.87627160945092	3.98834128285976	3.95749735209792	-0.2665594141597	0.568426059660934	0.808665348796528
Merged-chr4-65562635-3	chr4	65562535	65562735	+	903.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207109, intron 17 of 22)	intron (NM_207109, intron 17 of 22)	-42351.0	NM_053084	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	3.63188502146003	3.30648566188823	3.37190601557112	3.67824453701301	3.22947964924837	3.42557368450079	3.46860521572748	3.24939223677554	-0.597031804493364	0.263025670712864	0.574802868062722
Merged-chr10-76531465-4	chr10	76531344	76531544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146006)	promoter-TSS (NM_146006)	-161.0	NM_146006	16987.0	Mm.55075	NM_146006	ENSMUSG00000033105	Lss	2810025N20Rik|D10Ertd116e|Osc	lanosterol synthase	protein-coding	8.34548905621737	8.49504292914306	8.52017505982059	8.42296177807992	8.38656047960364	8.36110884172788	8.55459910130164	8.16553503621428	-0.0912842350297743	0.567489243161681	0.808302820303069
Merged-chr16-57301766-4	chr16	57301674	57301874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025599)	TTS (NM_025599)	-8923.0	NM_027651	71027.0	Mm.158563	NM_027651	ENSMUSG00000022753	Tmem30c	4933401B01Rik|4933409A18Rik|Cdc50c	transmembrane protein 30C	protein-coding	5.49512948026662	5.15863729140205	5.84588900081707	5.75805028736445	5.86229857359413	5.38734324088032	5.70264184292557	5.72772833804674	0.153846693976485	0.609113080310581	0.83089280248568
Merged-chr9-18277647-3	chr9	18277554	18277754	+	620.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14613.0	NM_025844	66917.0	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	3.15888324853799	3.10062803569638	3.42072878650043	3.17364939062958	3.13170675684201	3.01103404976862	3.203510587612	2.90241490931454	-0.577566368003763	0.319940415546456	0.631766330519035
Merged-chr2-34965465-2	chr2	34965365	34965565	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3693.0	NM_001326601	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	3.08993474854364	2.97162401723829	2.71828869670672	2.83319648312432	2.71556926517745	3.02662372570641	2.96642479404104	2.91608285358609	-0.00354887224176311	0.995438027241085	0.998334470328048
Merged-chr6-136808205-4	chr6	136808102	136808302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177688)	promoter-TSS (NM_177688)	-46.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	7.78983238853149	7.82269842438694	7.63042607416195	7.70567695948508	8.25398741926998	8.27672818641834	8.21731411048938	7.88497625894113	0.556021161743008	0.00120024384801722	0.0155738159338803
Merged-chr13-81760557-3	chr13	81760469	81760669	+	862.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22678.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	3.21537390464806	3.39351000202699	3.38695409921751	3.18903557202983	3.10470152934827	3.38833282038725	3.37319145491901	3.27366808234677	-0.0380663608469632	0.943444571012758	0.979567973035961
Merged-chr18-57845285-4	chr18	57845167	57845367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33411.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	6.06259603112751	5.77646212898818	5.83883754933602	6.29967864196219	6.22515971632268	6.15371196712515	5.68075228382581	5.9520015477923	-0.00214988641419974	0.993767754364177	0.997702270136287
Merged-chr2-166774677-2	chr2	166774579	166774779	+	895.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19088.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	2.92384276369511	2.82045278340306	2.86343081485085	2.59074729507131	2.74022570788485	2.6938699753213	2.97017383511166	3.08914130089356	0.382735319650865	0.550737596033143	0.798673593705145
Merged-chr5-34288476-2	chr5	34288376	34288576	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001015039)	promoter-TSS (NM_001015039)	-152.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	4.00999417103528	3.45935175886821	3.41001480627228	3.56410409480687	3.65003717193709	3.52553755271849	3.72934051911654	3.79135795851963	0.153144216915135	0.761273552691783	0.906512173824769
Merged-chr15-59729744-2	chr15	59729644	59729844	+	903.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65215.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	3.00251576228677	2.90485360077445	3.32534192405163	3.11677434381403	2.97703921652674	2.76059882097914	3.2129752886043	2.80420914040481	-0.594316504270175	0.349198231757098	0.65679883028286
Merged-chr4-131913412-1	chr4	131913312	131913512	+	724.0	f0_balb.idr	non-coding (NR_102394, exon 3 of 3)	non-coding (NR_102394, exon 3 of 3)	6617.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	2.81184354106094	2.71178742135351	2.92530482114367	3.22170882082434	2.38868925008523	2.58120025331205	2.39432768688288	2.55025696135811	-2.71081105902654	0.000941422383587599	0.012817426136454
Merged-chr10-4433144-1	chr10	4433044	4433244	+	1000.0	f1_balb.idr	promoter-TSS (NM_025343)	promoter-TSS (NM_025343)	539.0	NM_024261	73419.0	Mm.346733	NM_024261	ENSMUSG00000061759	Armt1	1700052N19Rik|AW320013|AW536799	acidic residue methyltransferase 1	protein-coding	3.06542153230677	3.06759359638412	3.12500223661987	3.07324371195168	3.06838723714338	3.17496481011738	2.9940171868668	3.17979825509525	0.0908257936708694	0.870143250753727	0.951235988471986
Merged-chr5-67463885-3	chr5	67463781	67463981	+	737.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015582)	promoter-TSS (NR_015582)	-17.0	NR_110363	320479.0	Mm.387187	NR_015582	ENSMUSG00000107385	C330024D21Rik	-	RIKEN cDNA C330024D21 gene	ncRNA	3.14937964788655	2.92013373323012	3.1498705083501	3.85178765467449	2.46421085846973	2.56992931313084	2.54029541177908	2.5451548412912	-5.55234155541301	1.2434338167025e-06	4.26742409060111e-05
Merged-chr15-59744670-4	chr15	59744562	59744762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50297.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	7.63965971873963	7.69775159662803	7.80999356504489	7.64642224031157	7.74068717393724	7.90133283860966	7.62912353813448	7.8196612031381	0.101161602590743	0.545647007931256	0.795970987775933
Merged-chr19-12798626-4	chr19	12798524	12798724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134152)	promoter-TSS (NM_134152)	45.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	6.24584032362408	6.44695276867477	6.01708795954487	6.00459454630888	5.69747698029841	5.55753103804153	5.83066997688146	5.65037999346969	-0.793369917744865	0.00238273928920094	0.0267425102280091
Merged-chr2-33871582-3	chr2	33871506	33871706	+	924.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 2 of 9)	intron (NM_175184, intron 2 of 9)	16340.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	3.51716341139679	3.4342085645755	3.34932866094996	3.59837682729019	3.36192122714232	3.52108752092746	3.45059514677329	3.51568714396023	-0.0926625131730045	0.85345408699149	0.944788460884744
Merged-chr10-77969424-2	chr10	77969324	77969524	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 1 of 33)	intron (NM_138301, intron 1 of 33)	448.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	3.13875174758654	3.29295058873906	3.13911310549084	3.20215129615863	3.22607303833404	3.31362405531683	3.2490803955095	3.61286492044159	0.583130670110486	0.278776341103159	0.591009603347969
Merged-chr18-54902720-4	chr18	54902619	54902819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	87461.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	6.0508946561884	5.72347407267519	6.07372641436451	6.56876380910921	6.21395500261799	6.2923177572868	6.34615070396004	6.28671453039781	0.181133708165185	0.508566369181702	0.773537739427407
Merged-chr9-99182320-4	chr9	99182239	99182439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42128.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	8.79865442812278	8.93859292968557	8.99880012074005	8.74637206234578	8.83798081301223	8.93647711540737	8.91301195734331	8.75318725068687	-0.0123208304149315	0.933751500395691	0.976129648653029
Merged-chr10-17951040-4	chr10	17950912	17951112	+	838.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2945.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	3.87661252599087	3.72808979443886	3.87717178979623	3.58268000787884	4.29712267993617	3.99940894721159	4.13278549115558	3.76862525488408	0.873716383727574	0.0525522686130344	0.238864490907227
Merged-chr18-53149769-4	chr18	53149681	53149881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26511.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	5.14470061005286	5.17152250848848	5.1795630543838	5.228429348792	5.43305434378185	5.451185465469	5.75206967531351	5.27282508126145	0.540022269422876	0.0617300275677475	0.26285356242146
Merged-chr1-139001202-4	chr1	139001072	139001272	+	891.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	23515.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	4.0834489947358	4.00256167323324	4.03657162920603	4.29798800768165	4.28219328828262	4.15966848013382	4.01953787818014	3.70665213201334	-0.138595140033075	0.755401349945479	0.903691031576485
Merged-chr14-57571586-4	chr14	57571498	57571698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026526)	promoter-TSS (NM_026526)	-16.0	NR_152103	67518.0	Mm.376343	NR_152103	ENSMUSG00000097933	1700039M10Rik	-	RIKEN cDNA 1700039M10 gene	ncRNA	6.7216609032663	6.94235505893227	6.57755756404546	6.88604126940149	7.00105470531708	7.09637239677212	7.09916211538387	6.8619127352661	0.302914155000414	0.133690094723007	0.407088321825123
Merged-chr8-120078284-3	chr8	120078204	120078404	+	801.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23168.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	3.27738132624578	3.2628671364634	3.33504434213757	3.26448132674729	3.06931576146404	3.26708802895073	3.65887980329066	3.21633981682972	0.125567644662638	0.820440724006618	0.931216561407907
Merged-chr10-34172980-5	chr10	34172882	34173082	+	935.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 2 of 5)	intron (NM_172508, intron 2 of 5)	34569.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	3.93628293662625	4.50833782701913	3.93681144036819	3.94659112776148	4.50081176120673	4.54276015798736	4.26791829060333	4.36942897970659	0.778436371948118	0.0649653954907756	0.271132916191024
Merged-chr2-93477703-3	chr2	93477597	93477797	+	863.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14747.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	3.403844356507	3.23110507917059	3.55269936152848	3.19328012550614	3.37471936154898	3.14904362350096	3.44171078856448	3.17157550329397	-0.183005999267769	0.738707365713566	0.896953902505534
Merged-chr1-138618113-4	chr1	138618020	138618220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 1 of 9)	intron (NM_021605, intron 1 of 9)	1637.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	6.70062840000998	6.49259457082726	6.59506472141642	6.55412840335339	6.68321789328734	6.60217530080825	6.91744269008785	6.55814086626148	0.165829108161078	0.428291169591665	0.719325810566156
Merged-chr3-35909149-3	chr3	35909061	35909261	+	781.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033623, intron 4 of 6)	intron (NM_033623, intron 4 of 6)	20913.0	NM_033623	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	4.03552632251544	3.38747118351731	4.16244779744993	4.3758162271168	3.60635571744774	3.85934347270969	3.66745423160693	3.79087820594399	-0.8893346112571	0.0929355140436961	0.333571527109891
Merged-chr15-101317971-3	chr15	101317866	101318066	+	734.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	24754.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	3.84090073916956	3.88100470776092	3.39290439646636	3.5573698170636	3.60843384448704	3.80989958364422	3.62197587014942	3.97367937145855	0.237871295254474	0.629312638362767	0.842116188261833
Merged-chr18-69537571-4	chr18	69537441	69537641	+	935.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 6 of 19)	intron (NM_001361128, intron 6 of 19)	191381.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	4.56747457159284	4.47008742366621	4.36201469095836	4.44588171984205	4.49327982401368	4.18694440682096	4.68900217518326	4.35932239157545	-0.0275592422776208	0.941793119508868	0.97898049638905
Merged-chr18-57571480-4	chr18	57571364	57571564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 3 of 6)	intron (NM_029290, intron 3 of 6)	-19067.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	5.69121177706926	5.4508152715897	5.90859515859051	5.98181384446379	6.01459579036732	5.78797328748793	5.85631072141118	5.88211390608951	0.172069857811453	0.52048121176386	0.780787600139836
Merged-chr11-75653401-4	chr11	75653314	75653514	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080774, intron 1 of 31)	intron (NM_001080774, intron 1 of 31)	1264.0	NM_001080774	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	5.32996274206966	5.08323657333193	4.82468141640371	4.81448172476109	5.38826453185643	4.96307876121934	5.40989294718043	5.27026829744952	0.484616415749018	0.135971475822755	0.410377403116059
Merged-chr2-112379144-4	chr2	112379009	112379209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024254)	promoter-TSS (NM_024254)	-102.0	NM_024254	72425.0	Mm.425091	NM_024254	ENSMUSG00000027132	Katnbl1	2410042D21Rik|AA166487|AA473307|AI467442	katanin p80 subunit B like 1	protein-coding	7.02136200681287	7.09751415873282	6.81595756140614	7.5248751657013	7.11263902003216	7.06652508214236	7.52404450309699	7.15007096696523	0.091075308860513	0.696452540023944	0.877228600292293
Merged-chr16-49800464-3	chr16	49800356	49800556	+	843.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55198.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	3.33817272456243	3.72452870730149	3.66997482135436	3.58589617448001	3.75370472436645	3.45127173976579	3.38805214859585	3.3983305619508	-0.23203905146247	0.654207231529301	0.855548918443157
Merged-chr10-11369977-1	chr10	11369877	11370077	+	650.5	f0_balb.idr	intron (NM_010146, intron 1 of 3)	ORR1G|LTR|ERVL-MaLR	26532.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	3.25118460765842	2.92502043902297	3.25166993747736	3.05645070705738	2.81347222651696	3.2559374511539	2.88615266770903	2.89387288900828	-0.647015646250013	0.293605280562862	0.60606822439406
Merged-chr6-72109086-2	chr6	72108986	72109186	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	11478.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	2.61381448712712	2.79345595480814	2.6885097059157	2.73486785647384	2.83705632285145	3.17773058898972	3.05222473124741	3.06341744666111	1.41722061356427	0.0229437268057142	0.140157185916918
Merged-chr13-47233294-4	chr13	47233166	47233366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 4 of 7)	intron (NM_146042, intron 4 of 7)	39263.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	6.13270334932867	5.66919908801279	6.24194964177533	6.39687948942346	5.71480849128326	5.63174515677544	5.54581071293707	5.65481570585817	-0.815567361661072	0.003397356076791	0.0352046015708118
Merged-chr4-11026450-4	chr4	11026310	11026510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-18791.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	6.31892423492408	6.34120067006275	6.14309609901694	6.41718789281062	6.46449344449337	6.47718690100672	6.35866029751573	6.09584634887451	0.0647013821308457	0.776863773756829	0.913015118902433
Merged-chr10-128008426-3	chr10	128008327	128008527	+	692.711121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013786)	promoter-TSS (NM_013786)	-816.0	NM_001359377	27400.0	Mm.26719	NM_013786	ENSMUSG00000025396	Hsd17b6	17betaHSD9|Hsd17b9|Rdh8	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding	3.34417835392927	3.57900699477162	3.45563151169279	3.30977164888373	3.39368670845944	3.39798259543789	3.08094694801368	3.50567937659606	-0.236726306620116	0.658693002963714	0.857995155933081
Merged-chr7-122138442-4	chr7	122138358	122138558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021608, intron 4 of 5)	intron (NM_021608, intron 4 of 5)	5417.0	NM_021608	59288.0	Mm.478285	NM_021608	ENSMUSG00000030868	Dctn5	4930427E12Rik|C78178|b2b315Clo	dynactin 5	protein-coding	6.02937761707508	5.55543286507593	6.12954132439038	5.97341670135785	5.80003780710022	6.07521250201726	5.79996528306349	5.94085752245232	-0.0540419368757148	0.837178104557151	0.938189376728559
Merged-chr2-102979330-4	chr2	102979225	102979425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77660.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	5.4862701295412	6.50334557624079	5.48723560284127	4.77799493044724	5.91928968606622	5.90290908626745	5.54369425051754	5.1892109740856	-0.100619062650589	0.871178979184515	0.951579046411027
Merged-chr9-21412431-2	chr9	21412331	21412531	+	880.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045742)	promoter-TSS (NR_045742)	594.0	NM_021888	60507.0	Mm.436579	NM_021888	ENSMUSG00000002825	Qtrt1	2610028E17Rik|Tgt	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding	3.3180264082471	3.36003352484349	3.54435958510092	3.17574407291855	3.56431615520938	3.55279354930441	3.11066238045017	3.81970470813827	0.629617501621871	0.251521323252308	0.56287087730158
Merged-chr15-101128813-2	chr15	101128778	101128978	+	797.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277255, intron 1 of 11)	intron (NM_001277255, intron 1 of 11)	356.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	2.74234012891415	2.60374317857514	3.04747250293883	2.64194285408406	2.92068834281954	2.98260896672241	2.97983588621258	2.871772500676	0.79660487421973	0.204935350653445	0.508442303630846
Merged-chr7-31148911-4	chr7	31148816	31149016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153431, intron 1 of 18)	(CAGC)n|Simple_repeat|Simple_repeat	2255.0	NM_027898	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	6.67731913924129	6.83253019208658	6.69370238650157	6.96823939356617	6.72902203692713	6.79265981214694	6.95329380683881	6.38268652829213	-0.111447953901012	0.61404680674533	0.833609107549057
Merged-chr6-113482746-4	chr6	113482669	113482869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133930)	promoter-TSS (NM_133930)	-587.0	NM_133930	171508.0	Mm.41593	NM_133930	ENSMUSG00000030284	Creld1	AI843811|i11E7	cysteine-rich with EGF-like domains 1	protein-coding	5.76790712541363	5.88710155901539	5.93644419358004	6.21315885980603	5.85715317572584	5.86718124397757	6.03322762553292	6.01876436473953	-0.0602275548707642	0.81321790322648	0.927851841528534
Merged-chr18-67308437-4	chr18	67308353	67308553	+	823.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053261, intron 3 of 7)	intron (NM_053261, intron 3 of 7)	19230.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	4.05224193731532	4.27704452176848	3.85221138950197	3.96434832341451	4.15139294010535	4.07783864381859	4.03541330866583	3.79539695671583	-0.0487035258291911	0.910984645226595	0.966904162861598
Merged-chr9-108847709-4	chr9	108847573	108847773	+	806.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001359573, exon 34 of 36)	exon (NM_001359573, exon 34 of 36)	-6370.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	3.76872163592425	3.81438716181177	4.37763054829287	3.69282783204116	3.81399224208652	3.99850449022801	3.90943372583069	3.87371912599814	-0.0966422330749671	0.838488448216327	0.938734869008585
Merged-chr7-136308993-4	chr7	136308885	136309085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102277, intron 3 of 3)	intron (NR_102277, intron 3 of 3)	40430.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	6.68247443461976	6.72845970003177	7.10573741234736	7.05890896433437	7.21223634312715	7.25887960243628	7.10406271555005	7.08912943209924	0.347795692139131	0.0880134333257911	0.32365269415091
Merged-chr6-4748256-4	chr6	4748164	4748364	+	671.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040611, intron 1 of 1)	CpG	958.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	3.67528079116642	3.54425092032742	3.61944228888484	3.9028760228809	3.70185156292068	3.73705373877282	3.86256191057268	4.09225362537337	0.430023258279672	0.368824745760418	0.673246565586521
Merged-chr5-66150853-4	chr5	66150724	66150924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291226, exon 1 of 6)	5' UTR (NM_001291226, exon 1 of 6)	154.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	4.98522585606857	5.89089682751653	5.32967446190361	4.40864660550163	5.44129577325901	5.91118039265267	5.17688380838024	5.35570930507913	0.401831650350209	0.338725476850182	0.648139485381841
Merged-chr9-90105680-4	chr9	90105596	90105796	+	925.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 3 of 12)	intron (NM_001039147, intron 3 of 12)	9124.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	4.55275528062935	4.91640069822072	4.71463797135003	4.68839372546735	4.8243225345823	4.54835250930914	4.6544723482319	4.71154616010908	-0.0606423833025321	0.860957008988659	0.947509837448531
Merged-chr19-46521480-4	chr19	46521366	46521566	+	871.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19818.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	4.35316219345857	4.30784505160316	3.97912532921162	4.22972360016821	4.20093512513392	4.20775368790371	4.16195568536862	4.35105559450004	0.0112073283049248	0.977493135834489	0.991888117862217
Merged-chr1-167247189-4	chr1	167247072	167247272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030724, intron 1 of 6)	intron (NM_030724, intron 1 of 6)	37955.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	6.63177090794103	6.19190167622204	6.37055511266978	6.6058103827895	5.82866739102764	5.88982002624321	6.19302849453291	6.03387355253754	-0.731563396338405	0.00289945655801755	0.0311329639980587
Merged-chr3-52070052-4	chr3	52069939	52070139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	34967.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	7.28241187217845	7.30133486356745	7.08170789050379	7.20814242361028	7.34032568961442	7.0900208134415	7.21597473443767	7.05223589829085	-0.0467310522848432	0.802982966529336	0.923965812075785
Merged-chr5-121712973-4	chr5	121712895	121713095	+	896.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	CpG	1386.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	3.67218647564035	3.4414514099415	3.67269292177049	3.89700372368951	3.72965970506251	3.49254684754709	3.85037594722898	3.72212709816439	0.0410872553477174	0.933421129337187	0.975967779615307
Merged-chr8-108730108-4	chr8	108729998	108730198	+	886.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	15454.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	4.95030664760801	4.21692074792495	4.29878289928808	4.67989520352142	4.71341008695711	4.5717078517137	4.50674733563493	4.71846612092776	0.129537427221291	0.741709571658601	0.898379089968478
Merged-chr11-29879880-3	chr11	29879783	29879983	+	957.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 7 of 41)	intron (NM_146016, intron 7 of 41)	-54215.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	3.75189223814988	3.75529557960015	4.17212057605783	4.37841797338198	3.71345519669362	3.62852206862844	3.68213066768031	3.95377119350728	-0.86791774551757	0.0791130629718998	0.304392506166957
Merged-chr15-84984213-2	chr15	84984071	84984271	+	624.133301	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	3800.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	2.85841963307606	2.70416073946854	2.85880383753923	2.59398444892559	2.60253224881427	2.90656133488056	2.65911252587979	2.85725000066698	0.0361212561921989	0.955536742121666	0.984214597604776
Merged-chr11-69033885-5	chr11	69033804	69034004	+	836.233337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281465, intron 17 of 22)	intron (NM_001281465, intron 17 of 22)	-11733.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	3.73575741553678	3.30471507139995	3.78261039113337	3.9103789871161	3.54274217982701	3.53103940635333	3.34329757031502	3.35298466087883	-0.846540824255622	0.111850148025558	0.369609177637475
Merged-chr17-43230068-4	chr17	43229952	43230152	+	957.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40295.0	NM_133776	77596.0	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	4.73459559342302	4.4591572077297	4.351438353922	4.8248744094951	4.93564494482137	4.4814323829337	4.71291771625527	4.87151662205773	0.312527414916913	0.401526237515491	0.699090946140482
Merged-chr17-87446133-4	chr17	87446012	87446212	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007589, intron 1 of 5)	CpG	823.0	NM_001355703	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	4.77392927656613	4.70823586133417	5.0605603102148	5.06785352202627	5.13261894777456	4.91062127771402	5.0036851967797	4.99151520447361	0.184827021110246	0.570269100513323	0.809928453527503
Merged-chr12-70111560-4	chr12	70111442	70111642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104398)	promoter-TSS (NR_104398)	87.0	NR_104398	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	5.04352518193012	4.81732161276005	5.33618757833547	5.06781950982782	5.05819914794726	4.75446552793424	4.91804596428923	4.90231767378867	-0.301108391903956	0.359995808807089	0.665611988334495
Merged-chr5-139742854-4	chr5	139742753	139742953	+	974.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-6520.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	4.34735875869013	4.52573153646881	4.73361214044943	4.53590334737492	4.79158451256763	5.01005090202489	4.59599029397501	4.80233641341066	0.561872740900926	0.109212358557311	0.364941855769723
Merged-chr2-156863044-4	chr2	156862951	156863151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015591)	promoter-TSS (NR_015591)	-71.0	NM_026124	67388.0	Mm.29264	NM_026124	ENSMUSG00000027637	1110008F13Rik	AI316789	RIKEN cDNA 1110008F13 gene	protein-coding	8.21364195834703	8.54789833521543	8.06651201682454	7.98972081339244	8.06238055453583	8.14865778619861	8.18777671411531	7.90760013679915	-0.178792999387474	0.341802479507651	0.650755862859763
Merged-chr5-92934424-4	chr5	92934306	92934506	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077596, intron 3 of 9)	MIR|SINE|MIR	36413.0	NM_001077596	27428.0	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	4.36321032823627	4.42867607152658	4.3638907800635	4.12944731546354	6.12478482377489	5.67988509898405	6.16239365463678	6.16023138203731	3.23208464206472	1.06956839099449e-24	6.45176343242345e-22
Merged-chr4-34701721-4	chr4	34701607	34701807	+	950.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347062, intron 11 of 12)	ORR1E|LTR|ERVL-MaLR	-14269.0	NM_011895	24060.0	Mm.281885	NM_011895	ENSMUSG00000028293	Slc35a1	AA408150|AI314851	solute carrier family 35 (CMP-sialic acid transporter), member 1	protein-coding	4.84051308063106	4.55840980694196	4.87682962085238	4.98947306145573	4.83818380755337	5.26985673889427	4.74457522894105	4.2592079377821	-0.0119550614036718	0.975828664093555	0.991372171924056
Merged-chr9-116099816-2	chr9	116099703	116099903	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	75560.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	2.53803270512787	2.34698929871472	2.53830101809541	2.57176976135328	2.55815320115935	2.89031044448803	2.65772579056232	2.66612313308595	0.978461284731337	0.152048223650298	0.435906076000675
Merged-chr13-55421286-4	chr13	55421181	55421381	+	914.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021489, exon 8 of 14)	exon (NM_021489, exon 8 of 14)	5523.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	4.43548406516424	4.210321129129	4.39013573275776	4.31634023349152	4.69391049644379	5.02617661273707	4.8957234465978	4.64164133857663	1.0527829341746	0.00315468168543288	0.0331973813848946
Merged-chr10-96351526-4	chr10	96351421	96351621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125314.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	6.35100034032113	6.59897627662513	6.67058816538712	6.48559475880178	6.54975562922772	6.58507910996056	6.87717395972557	6.57374319830636	0.175280460321962	0.416063546666053	0.710072021761014
Merged-chr14-21137103-2	chr14	21137003	21137203	+	784.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 3 of 10)	intron (NM_134079, intron 3 of 10)	60951.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	3.16354605831393	3.3411495841743	2.96920505730848	3.25686927186435	3.38851738380277	3.33394914929612	3.15286176993518	3.16238112450548	0.265201137688542	0.634805066722778	0.845428841152951
Merged-chr16-44087819-4	chr16	44087706	44087906	+	906.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358203, intron 14 of 14)	intron (NM_001358203, intron 14 of 14)	-45798.0	NM_001359085	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	4.32869417110071	4.54094892626972	5.00870375729125	4.90939643014207	4.64843641859772	4.45900155961359	4.57687292773302	4.59512238794659	-0.343800008248819	0.366466250506081	0.670899490592347
Merged-chr4-41136529-4	chr4	41136427	41136627	+	830.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026275, intron 1 of 4)	intron (NM_026275, intron 1 of 4)	506.0	NM_026275	67615.0	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	4.12484547074155	4.00520520231442	4.02393534063266	4.02492089677641	4.28410997887915	4.25168220043038	4.32896758566777	4.66947998071185	0.862597897866382	0.0298159327074099	0.166540562563563
Merged-chr10-89697740-3	chr10	89697643	89697843	+	897.1555789999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130956, intron 2 of 2)	intron (NR_130956, intron 2 of 2)	11380.0	NR_130956	69002.0	Mm.293947	NR_130956	ENSMUSG00000097383	1500026H17Rik	-	RIKEN cDNA 1500026H17 gene	ncRNA	4.71979786035972	4.26930773332298	4.87109414374356	5.09977664120663	3.63977808606793	3.69133454700138	3.82210978707002	3.56232466417948	-3.04233608219795	3.35789874661133e-09	1.95430805302574e-07
Merged-chr15-19857851-3	chr15	19857745	19857945	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	672472.0	NR_155419	102639102.0	Mm.463245	NR_155419	ENSMUSG00000115803	Gm35496	-	predicted gene, 35496	ncRNA	4.15240740868088	3.89506228208332	4.08047646328617	2.60490973967635	7.1806842904299	7.25679486326967	6.80833599749622	6.23014980475872	7.84012175068422	5.15287705612457e-38	1.52823598324121e-34
Merged-chr12-82448317-4	chr12	82448222	82448422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 22 of 23)	intron (NM_001167983, intron 22 of 23)	136973.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	6.05642641835875	6.5808739854016	6.4494742630624	6.51209945957184	6.75102469382831	6.59094490018996	6.93101227629508	6.96138625410141	0.563519715514821	0.0133963329363118	0.0970909399635035
Merged-chr12-105436176-2	chr12	105436076	105436276	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17680.0	NM_001252508	268595.0	Mm.2388	NM_001252508	ENSMUSG00000094910	D430019H16Rik	AI852661	RIKEN cDNA D430019H16 gene	protein-coding	3.33205178533085	3.27078258665074	3.72100253004283	2.93770541550212	3.19946945847537	3.3864578930705	3.55248596426485	4.25699737563342	0.997540557969046	0.109067783153817	0.364647052001198
Merged-chr2-169790941-2	chr2	169790836	169791036	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	157290.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	3.37534216251327	2.77514196311931	3.25984173284081	2.81928872197214	3.94461348941775	3.31413907443332	3.2471682268965	3.42812294749397	1.56406646813654	0.0152174415408577	0.105943101666345
Merged-chr15-89078412-4	chr15	89078309	89078509	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026485, intron 1 of 9)	intron (NM_026485, intron 1 of 9)	2345.0	NM_001355617	67976.0	Mm.284710	NM_026485	ENSMUSG00000015363	Trabd	5730502D15Rik|AL023039	TraB domain containing	protein-coding	4.81549732679304	4.80418693986325	4.81628022386531	4.74112884887593	5.16469891407998	5.20394175231933	5.29747957928752	4.85153785933058	0.688803591159946	0.0293044553642549	0.164668968846001
Merged-chr2-124608846-4	chr2	124608761	124608961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-1435.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	7.26766632541819	6.99145049857006	7.45489783022161	7.33038255431598	6.99321985070299	6.85175213931804	7.59506689169461	7.26384338707007	-0.0883538391878158	0.700227229601218	0.879054781621322
Merged-chr15-25987216-4	chr15	25987100	25987300	+	892.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144523, exon 3 of 6)	exon (NM_144523, exon 3 of 6)	2834.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	4.65963072070507	5.17976540441249	4.57177442731815	5.25992078295139	5.0766525060309	4.60974213521987	5.00559975753098	4.8181643056726	-0.148034775380891	0.695582390798042	0.876763927653867
Merged-chr7-140999032-4	chr7	140998960	140999160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11684.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	5.34198743457137	5.42437740374021	5.46093503027419	5.76794307917061	5.38336615503041	5.51846505440739	5.22102341647227	5.66427438614835	-0.130036170810146	0.659031229685926	0.858075830194168
Merged-chr1-131025959-4	chr1	131025871	131026071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6126.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	5.47549282164692	5.91910819998506	5.88785449621553	5.23988269074024	6.35471602057128	6.40870258315984	6.05184456641524	6.19398152237643	0.976848256759983	0.000513275014536727	0.00787888769888067
Merged-chr5-5115278-3	chr5	5115171	5115371	+	969.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 6 of 14)	intron (NM_011074, intron 6 of 14)	150797.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	3.18458024435807	3.0064200545596	3.10018937608887	2.42274087034348	4.45643782456349	4.47332173554318	4.38196914597851	4.53546230941027	7.73541598374204	5.55248351518545e-18	1.41655994310891e-15
Merged-chr15-101254114-4	chr15	101254006	101254206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12740.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	7.73419483343646	7.84718455778608	7.59673169770645	7.54229832648312	8.13580382490768	8.000265782538	8.23489769921628	7.97534111855544	0.534461477330889	0.00182856244216926	0.0218125098158481
Merged-chr17-17900964-4	chr17	17900873	17901073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13149.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	8.50025315112923	8.81397450554929	8.49668000269951	8.4217587129105	8.55525965098665	8.61378847195478	8.71878607423563	8.0726742663736	-0.0663964538395305	0.729404043131623	0.892618292862695
Merged-chr14-70370680-4	chr14	70370569	70370769	+	971.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19245.0	NM_001135151	213053.0	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	4.96007366323848	5.15005275020734	5.23115346351392	5.06494545100671	5.50908244634939	5.34233413921419	5.26421705393766	4.83979553104099	0.31267242622696	0.327026448878416	0.638664790098412
Merged-chr19-6288173-4	chr19	6288073	6288273	+	899.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	11277.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	4.33985790366096	4.86654015395181	4.20452619233631	3.66935020315447	4.19916547712469	4.42717493912278	4.48026611957396	3.93909813238751	-0.155613664728701	0.754958908047202	0.903523774777845
Merged-chr3-133086075-4	chr3	133085982	133086182	+	791.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356309, intron 1 of 11)	intron (NM_001356309, intron 1 of 11)	5743.0	NM_026231	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	3.84941239347717	4.53338160958905	4.12833924985613	4.54752696050211	4.17005609730381	4.30405971918532	4.53094457117845	4.31268861154396	0.0497891230714154	0.909771321859517	0.966502185320198
Merged-chr18-46963593-4	chr18	46963496	46963696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178377, intron 2 of 6)	intron (NM_178377, intron 2 of 6)	4720.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	5.72466681433429	5.86092425271745	5.67598476499552	6.15578422614525	5.34986831409993	5.21671754567673	5.69655100529303	5.59364090096587	-0.688585189975985	0.017322308503803	0.116133050484336
Merged-chr19-17319963-4	chr19	17319896	17320096	+	957.87915	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	19509.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	4.59388944967144	4.08954269701948	4.59464335185693	4.73733044375715	4.4220894471272	4.17463472170947	4.41697418262999	4.39176649113864	-0.40653419192193	0.313229151994245	0.625166179930743
Merged-chr7-5015509-5	chr7	5015360	5015560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025324)	promoter-TSS (NM_025324)	-48.0	NM_025324	66056.0	Mm.19974	NM_025324	ENSMUSG00000051184	Zfp524	0610012F07Rik|2300009P13Rik|Znf524	zinc finger protein 524	protein-coding	6.15175756440768	5.84165472771646	5.75882306414971	6.10208430817734	6.174692579409	6.06565131581899	6.40381332603561	6.5239288632004	0.491016193461024	0.0506063498662139	0.233296839112781
Merged-chr4-109457018-4	chr4	109456906	109457106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013876, exon 2 of 3)	exon (NM_013876, exon 2 of 3)	19499.0	NM_013876	29864.0	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	5.21284687229824	5.20366911348282	5.21372495596051	5.82223931106425	5.54903973901216	5.35682958699902	5.45612249590722	5.39614654775406	0.0418397196045304	0.896034119418	0.960994089571403
Merged-chr1-152152619-4	chr1	152152505	152152705	+	835.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62285.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	4.24224617601694	3.8964043607327	4.10365023246833	5.00175783536138	4.152330326207	3.95597828527272	4.08602603843091	3.99949993422868	-0.86708736029007	0.081755918184032	0.310354389326763
Merged-chr11-87018224-2	chr11	87018124	87018324	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24462.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	2.97955219711142	2.76704921482013	2.92233310376753	2.58414918586448	3.08246423463119	2.76821576333109	2.65499130402549	2.92076399338624	0.258553651097778	0.69421262987488	0.875781801103543
Merged-chr5-138229739-4	chr5	138229629	138229829	+	971.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001013773, exon 2 of 6)	5' UTR (NM_001013773, exon 2 of 6)	3825.0	NM_001013773	381680.0	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	5.98565929382414	5.62396575968866	5.83980388108609	6.27397912820688	5.57287854894881	5.08434541771115	5.39409801645215	5.44790695028319	-0.954649319839701	0.00154183565304198	0.0190962797890856
Merged-chr7-67380863-4	chr7	67380762	67380962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8004.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	5.86501768475545	6.00787389164882	5.48092058365114	5.74104375521344	5.75304610847857	5.6581714250646	5.64662180245208	5.59165111816882	-0.199519226181934	0.455393434078568	0.738955495643786
Merged-chr18-23900252-4	chr18	23900145	23900345	+	839.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-54443.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	3.92977626265036	3.80545263307767	3.63572010866579	3.81233543839613	3.71965615410754	3.29300790916808	3.50781238281837	3.97087201514018	-0.449652403708353	0.380956101646183	0.683305836156047
Merged-chr19-4878621-4	chr19	4878535	4878735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013456)	promoter-TSS (NM_013456)	-33.0	NM_027476	70605.0	Mm.36885	NM_027476	ENSMUSG00000006463	Zdhhc24	5730496N17Rik|Leng4	zinc finger, DHHC domain containing 24	protein-coding	7.89732233387638	7.8827982306759	7.48637722591186	7.37475357775159	7.62541511114203	7.76484534912261	7.47773057398558	7.50021230113757	-0.101813458026522	0.615826229477855	0.83467255086626
Merged-chr8-8134893-2	chr8	8134793	8134993	+	804.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	525880.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	3.16053683542801	2.74410312310221	3.03252363437096	2.6838913564803	3.06290812468156	3.33824751211402	3.6026975074925	3.4828624510459	1.87351878913327	0.00244787405484724	0.0273227579347612
Merged-chr18-57593928-3	chr18	57593832	57594032	+	791.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 4 of 6)	intron (NM_029290, intron 4 of 6)	-41535.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	3.92151800717223	3.63392331884611	3.92210474198759	4.20741396576743	3.76868628768605	3.78115453878566	3.53128384048474	3.87203526553053	-0.593927482154979	0.218390952841014	0.525674919161812
Merged-chr7-3946322-4	chr7	3946216	3946416	+	896.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30815.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	4.65033970849974	4.2736033804893	4.57918840483681	4.66433101065403	4.34359644316691	4.214266673138	4.40151239264948	4.08631250985775	-0.667741809669903	0.0880890574854973	0.323779847114309
Merged-chr13-23446209-4	chr13	23446132	23446332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15215.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	5.28514903455787	4.63995611955517	4.77772967490387	4.71548400456862	5.05800653587573	4.91400835632217	4.86649956240843	4.85040871908941	0.1241188525723	0.722463280250301	0.88918461475172
Merged-chr11-40693677-4	chr11	40693612	40693812	+	860.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199274, intron 1 of 6)	intron (NM_001199274, intron 1 of 6)	-1030.0	NM_134017	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	3.39109946998382	3.50353413767743	3.5773929471952	3.8338329553455	3.74466476758968	4.05203110809467	3.67345681518187	3.88269405240332	0.707333190147721	0.157340002255919	0.443883818312874
Merged-chr10-75231544-2	chr10	75231444	75231644	+	865.5750119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 2 of 15)	intron (NM_153406, intron 2 of 15)	19154.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	3.15720008640907	3.16708991952563	3.09278855030947	3.41945237190908	3.38754857869436	3.26768548569423	3.47512544755611	3.38671420311129	0.541115443193572	0.32318813228725	0.63468638620704
Merged-chr6-129088752-4	chr6	129088647	129088847	+	977.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	12156.0	NM_153506	232409.0	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	5.84639825609863	5.52950334700844	5.69513206594046	5.00013581638842	5.37783686271	5.49644359421039	5.19750050365128	5.2526879989396	-0.354898025331628	0.283031280252749	0.595239577400219
Merged-chr18-53247157-4	chr18	53247052	53247252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	1490.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	7.60078520679596	7.43637733848632	7.96268249723824	7.74518693870444	7.62267857345751	7.61207601833302	7.29432899232304	7.63965520074045	-0.196725947837349	0.313998327681383	0.626000251128286
Merged-chr12-87375865-3	chr12	87375771	87375971	+	843.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011479, intron 1 of 11)	B3|SINE|B2	12484.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	3.94639988570876	3.79406043612191	3.94697473393121	4.04209694606629	3.96259959555352	3.85582064643921	4.10854347480361	3.84410123429287	0.0178021573198696	0.967228429881978	0.988490012786718
Merged-chr4-141239524-4	chr4	141239423	141239623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3361.0	NM_172520	213649.0	Mm.134460	NM_172520	ENSMUSG00000028919	Arhgef19	6030432F23|6430573B13Rik|WGEF	Rho guanine nucleotide exchange factor (GEF) 19	protein-coding	5.41862895075565	6.04645385548533	5.67288448769422	5.6687490144571	5.51700464406051	5.59538563021328	5.8976002516737	5.88107441986811	0.00697107440438432	0.980546797455805	0.99281244474172
Merged-chr9-103364389-2	chr9	103364266	103364466	+	953.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_175833, intron 1 of 4)	RSINE1|SINE|B4	613.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	3.24132892533728	3.33157003077217	3.51508623563694	3.165133884721	3.29413192368592	3.35409593415406	3.28892846260814	3.41070714500157	0.0939395626886764	0.858586969602993	0.946576014812915
Merged-chr8-115638406-3	chr8	115638310	115638510	+	938.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68484.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	4.20008675640704	3.65106071905125	3.79311603998891	4.27296609159455	3.54026178981999	3.80178785605628	3.54823880165222	4.07630286527199	-0.72542509560637	0.156660698601406	0.442708903674349
Merged-chr6-47953366-4	chr6	47953240	47953440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178898)	promoter-TSS (NM_178898)	-50.0	NM_178898	101197.0	Mm.241063	NM_178898	ENSMUSG00000045466	Zfp956	AI894139	zinc finger protein 956	protein-coding	6.84156042140708	6.58311325868774	6.81577116619297	6.96675949335966	6.43382940035432	6.71969065663574	6.834325267419	6.65119274279606	-0.223469105418022	0.302956479434743	0.615482556585475
Merged-chr5-122354347-4	chr5	122354302	122354502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144912)	promoter-TSS (NM_144912)	74.0	NR_152872	56433.0	Mm.216528	NM_019780	ENSMUSG00000029462	Vps29	2010015D08Rik|AW049835|PEP11	VPS29 retromer complex component	protein-coding	7.4096320232221	7.31542350198356	6.79334712226201	6.74695041237552	7.21052500966085	7.41728835041025	7.13815503169379	7.50479694735359	0.314179870083342	0.177415521466989	0.472806643808905
Merged-chr17-26237187-4	chr17	26237105	26237305	+	971.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	7037.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	5.18745418972692	5.06219889467704	4.74592429732348	5.55102216579725	5.24727611452471	5.08808437938626	4.92539439454457	5.35900357999497	-0.0438728311491154	0.900225871552749	0.963037675111283
Merged-chr7-45538720-5	chr7	45538510	45538710	+	974.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148927, intron 8 of 19)	intron (NM_148927, intron 8 of 19)	12280.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	4.52960531407292	4.6556245367206	4.73691478575063	4.1752062754106	4.07489639291997	4.15937795879063	4.01694563542868	4.18608536103951	-1.03041067788703	0.0141969619548918	0.100901203693185
Merged-chr2-6582939-4	chr2	6582843	6583043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 11 of 15)	ORR1E|LTR|ERVL-MaLR	138719.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	5.26091333154925	5.70010562534651	5.22879653134311	5.95214135771105	5.26459045482111	5.30322530623321	5.41650736253154	5.35231360933771	-0.459923338213095	0.148923498871019	0.430850942004645
Merged-chr1-59883990-4	chr1	59883895	59884095	+	766.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29011.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	3.23617301274705	3.18268659570963	3.35364109933668	3.2061591772996	3.53629245461499	3.07613457252366	3.22504560771937	3.73452540974728	0.629967398182791	0.259532026290099	0.571360574641314
Merged-chr5-92136902-3	chr5	92136790	92136990	+	926.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	835.0	NM_001359197	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	3.67601311097706	3.70444686099011	3.91028543737401	3.49676089164762	3.38929252412254	3.74248863139199	3.44062259916678	3.56759543010343	-0.512229407318347	0.308033281982898	0.620419629836763
Merged-chr4-43052877-4	chr4	43052792	43052992	+	872.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6061.0	NM_021468	22249.0	Mm.128892	NM_021468	ENSMUSG00000028456	Unc13b	Munc13-1|Munc13-2|Unc13a|Unc13h1|Unc13h2	unc-13 homolog B (C. elegans)	protein-coding	3.79065150981536	3.91626497191009	3.67615567559351	3.74054067657656	4.31299113227973	3.91176251285143	4.02313121434011	4.12608139851405	0.899395237678975	0.0381190150472262	0.195537141254433
Merged-chr15-79243372-4	chr15	79243262	79243462	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045558, intron 6 of 12)	intron (NM_001045558, intron 6 of 12)	11386.0	NM_020516	57274.0	Mm.441697	NM_020516	ENSMUSG00000032988	Slc16a8	Mct3	solute carrier family 16 (monocarboxylic acid transporters), member 8	protein-coding	5.41890784581902	5.35618884523578	5.254540056853	5.37675071198608	6.11045143922579	6.11973636142456	6.06924867901733	5.50593301050058	1.0347916653373	0.000204084859636509	0.00369820677802116
Merged-chr9-106341481-4	chr9	106341383	106341583	+	911.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 10 of 10)	intron (NM_027354, intron 10 of 10)	-27149.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	5.06599060110481	4.77638252609149	4.77722603572884	5.2996475167197	4.36487591567677	4.3233166538548	4.42939980963178	4.39900313453387	-1.38256287115365	0.000217647794641007	0.00390029012455997
Merged-chr17-84860139-4	chr17	84860053	84860253	+	991.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	-69367.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	5.89327900515212	5.48230002483597	6.15409810076628	6.23796589007918	5.60807644985537	5.2312485474067	5.69926628374584	5.97586706692875	-0.528958478056082	0.0902594656375155	0.328069167370307
Merged-chr15-73620875-4	chr15	73620769	73620969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	-3545.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	6.77283514545621	7.04789237124448	7.02615919004394	6.98170220127068	6.79989999282158	6.93626264062853	6.83808144035135	6.9469665700016	-0.121537052765651	0.530478596892084	0.786546182730943
Merged-chr13-47265345-4	chr13	47265259	47265459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71356.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	5.52821316162659	5.52673434922254	5.60903462807067	5.80639940796773	5.52673696631734	5.32790277325181	5.63097226727176	5.55245845463925	-0.206008239984172	0.451284088338076	0.735881196852671
Merged-chr11-83737471-4	chr11	83737371	83737571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-9469.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	7.30967990189289	7.62457513464842	7.01267609366085	7.00166188086012	7.29756793382193	7.41424954841036	7.13467193387937	6.96829279202613	-0.0596660162262324	0.79140608072789	0.919082629099386
Merged-chr3-40531630-4	chr3	40531564	40531764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8752.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	6.21264887434916	6.26237098689151	5.78905221186395	6.02910314696648	6.26272209750786	6.04405548860887	6.39007973124576	6.08999575524767	0.188947343303007	0.441778227765314	0.728643351425231
Merged-chr1-90975149-4	chr1	90975072	90975272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5552.0	NM_008998	19329.0	Mm.279780	NM_008998	ENSMUSG00000026304	Rab17	AW413472	RAB17, member RAS oncogene family	protein-coding	7.45470136387406	7.64019224390596	8.00361070915697	7.76188485280515	7.15471977488531	7.44892626719419	7.34046678428072	6.95394333000641	-0.66149675511509	0.00136441602691632	0.0173084598787876
Merged-chr6-29268661-3	chr6	29268569	29268769	+	946.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3819.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	4.10069107431297	4.46033498013889	4.40273201652944	4.56747404782242	4.21805942935866	3.89340126787813	3.75881997496586	3.99807979470257	-1.05232287750549	0.0176549356308833	0.117609795345872
Merged-chr9-57629404-4	chr9	57629275	57629475	+	805.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 7 of 14)	intron (NM_001304761, intron 7 of 14)	-8601.0	NM_199222	235416.0	Mm.295630	NM_199222	ENSMUSG00000056271	Lman1l	BC020188|slamp	lectin, mannose-binding 1 like	protein-coding	3.77816326051119	3.72206691281188	3.61740745495407	3.68914871185065	3.96763284260442	3.79105786155723	3.81210774043457	3.72505037617003	0.388989776504321	0.386345088416204	0.687552275421561
Merged-chr10-41573361-4	chr10	41573259	41573459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 36 of 47)	intron (NM_001358562, intron 36 of 47)	5343.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	7.47615909355226	7.27639604594518	7.47743666606207	7.46565337669904	7.12371055379075	7.17060121551992	7.45853950009561	7.25326072604003	-0.232160649406507	0.209141812100068	0.513575693212955
Merged-chr8-35718569-3	chr8	35718489	35718689	+	728.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107970.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	3.02777180508399	2.87172239574018	3.02808342147583	2.86667970663292	4.08651602656288	3.56647138995925	4.17430287676927	3.89335568445361	3.61547402531456	3.37919134665448e-09	1.96509363450588e-07
Merged-chr16-46022697-4	chr16	46022546	46022746	+	750.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12233.0	NM_001134480	433022.0	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	3.68691551983727	3.7249563893159	3.83714782610054	3.81468938675362	3.60629700900453	3.95755508193773	3.44473806874846	3.57511602340339	-0.347146683355063	0.470759230612622	0.749405570544939
Merged-chr5-21351864-4	chr5	21351760	21351960	+	977.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	MusHAL1|LINE|L1	-20813.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	4.79418895222712	4.9929681897136	5.03518381755209	4.97514055864186	4.99248159583749	4.67853808158246	4.77241648137523	4.54285880418396	-0.373775348102236	0.271551378221246	0.583247666197459
Merged-chr12-85736418-2	chr12	85736318	85736518	+	732.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10121.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	2.56313735172836	2.7917243113036	2.56334266218658	2.89709285374787	2.81794833737267	2.87649196157617	2.93753248105317	2.94770736752626	0.773224175130823	0.245000925890955	0.556141241317481
Merged-chr14-63372696-2	chr14	63372596	63372796	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007549)	TTS (NM_007549)	44491.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	3.03258224403044	2.9770232540119	2.77240739453878	2.64787123632043	3.24030636949387	3.01843606752309	2.96177896834559	3.14424706973513	1.03313903391628	0.090324370665245	0.32824915882671
Merged-chr12-100615340-4	chr12	100615237	100615437	+	956.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153587, intron 5 of 17)	intron (NM_153587, intron 5 of 17)	-94515.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	5.19556512564205	4.67251631599615	5.58723248598598	5.4429362049818	5.09294625405133	4.76546288867517	4.93809441307149	5.09766030263601	-0.541926100973024	0.131912938843088	0.404316091182819
Merged-chr16-50613110-3	chr16	50613021	50613221	+	719.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040566, intron 3 of 4)	intron (NR_040566, intron 3 of 4)	-21967.0	NM_027046	69339.0	Mm.422869	NM_027046	ENSMUSG00000050685	Ccdc54	1700007N18Rik|AI644412|BB013989|NYD-SP17	coiled-coil domain containing 54	protein-coding	3.39399319639184	3.37589004447507	3.4506583353713	3.69635223347967	3.34934434039359	3.56478962440515	3.32395227101786	3.4488004223698	-0.264352738286576	0.610345136028418	0.831595076242652
Merged-chr19-17218370-4	chr19	17218266	17218466	+	944.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 19 of 19)	intron (NM_181348, intron 19 of 19)	121139.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	4.4029500881036	5.00876141115577	4.45679741654969	4.44562458791585	5.52069772236259	5.56410229863244	5.53047608895474	4.89548882701216	1.54590699647462	2.31623974117614e-05	0.000579907240721691
Merged-chr7-110258490-3	chr7	110258413	110258613	+	770.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 3 of 11)	PB1D10|SINE|Alu	36810.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	3.33627803399352	3.81099941153663	3.33670862603383	3.29069010186349	3.68832875040064	3.0413535374854	3.26553342384294	3.21329363249356	-0.434162374940816	0.472890195583353	0.750907386220789
Merged-chr1-23763018-4	chr1	23762900	23763100	+	957.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172124, exon 1 of 4)	exon (NM_172124, exon 1 of 4)	1074.0	NM_172124	280645.0	Mm.471661	NM_172124	ENSMUSG00000026156	B3gat2	GlcAT-S|Glcats	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	protein-coding	4.50649317365606	4.68207565049466	4.36117838250749	5.25920985721835	4.82975494984716	4.93133281142364	4.77270570336144	4.89833980888387	0.16034796535779	0.69031510974387	0.873854046781179
Merged-chr15-103182314-4	chr15	103182211	103182411	+	985.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-19027.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	4.70688491663908	4.56725921454853	4.55066318318507	4.38094712403494	4.75086056504025	4.59531745013535	4.72136383995982	4.70453479641337	0.34118209692162	0.327518487888444	0.639011622936083
Merged-chr9-13827061-4	chr9	13826963	13827163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310721)	promoter-TSS (NM_001310721)	-10.0	NR_037622	74360.0	Mm.157212	NM_026665	ENSMUSG00000031922	Cep57	3110002L15Rik|4921510P06Rik|4931428M20Rik|AI467480|Tsp57|mKIAA0092	centrosomal protein 57	protein-coding	8.62948920150566	8.56064776510876	8.54818899655515	8.6024615422403	8.54995410101847	8.56928574320089	8.60017885948691	8.24977834674569	-0.107201589221242	0.489669441248839	0.761934122721916
Merged-chr4-154942845-4	chr4	154942755	154942955	+	858.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14778.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	4.6449782167097	4.88773765328883	4.71789377762668	4.32691279749261	4.54847583181224	4.43691459771284	4.28907195715666	4.25593624428045	-0.576030058797812	0.143810872492991	0.422325030661713
Merged-chr2-91730330-7	chr2	91730235	91730435	+	997.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172669, exon 1 of 18)	5' UTR (NM_172669, exon 1 of 18)	197.0	NM_001080754	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	4.5934297651427	4.96021507217706	4.75750294304824	4.19076695119269	5.18684636749257	5.07482652390191	4.57309786018121	4.89909614113365	0.64417776009849	0.0989075042931824	0.344766760435085
Merged-chr6-141050929-2	chr6	141050829	141051029	+	836.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-198340.0	NM_018779	54611.0	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	2.70952714779553	2.72108100561662	2.77025625385482	2.41027868335129	2.73429795932644	2.68502280839217	2.63755776570684	2.50892918069239	-0.0307706798827563	0.963988101369465	0.987219571066085
Merged-chr7-46710607-4	chr7	46710487	46710687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030233)	promoter-TSS (NM_030233)	64.0	NM_030233	78935.0	Mm.289866	NM_030233	ENSMUSG00000006763	Saal1	5031425D22Rik|SPACIA1	serum amyloid A-like 1	protein-coding	5.97838196982861	6.07456688783463	6.17652538299545	5.78261015145175	5.67122729548557	5.92202668395893	5.58207602765788	5.93176321161394	-0.352601133422637	0.17829794928098	0.474078062453151
Merged-chr10-72655366-4	chr10	72655279	72655479	+	889.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293683, intron 1 of 7)	intron (NM_001293683, intron 1 of 7)	533.0	NM_001293683	52696.0	Mm.62876	NM_025635	ENSMUSG00000019923	Zwint	2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1	ZW10 interactor	protein-coding	4.48292737601352	4.28819794173591	4.27526683841993	4.10861190878102	4.39642891433759	4.6526913646361	3.95552804007226	4.27261110799835	0.137106147301089	0.741655257847726	0.898344123279219
Merged-chr6-115315974-3	chr6	115315885	115316085	+	695.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-44966.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	3.19075586138303	2.97222651448608	2.95613855777453	3.05086000259383	2.76979740493818	3.12899318712788	3.12390629373499	3.07739072520666	-0.0743326998425094	0.900601196409968	0.963161804192488
Merged-chr11-86758776-4	chr11	86758634	86758834	+	902.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1167.0	NM_001356393	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	3.63334224210477	3.45033566197003	3.63386141979887	3.5142140064672	3.78934080971331	3.46457987247942	3.34012092454482	3.63176171889181	0.0684306547982803	0.891547989348492	0.959385213525176
Merged-chr8-4253136-4	chr8	4253013	4253213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133968)	promoter-TSS (NM_133968)	11.0	NM_133968	102209.0	Mm.28452	NM_133968	ENSMUSG00000011837	Snapc2	0610007H10Rik|AU015675	small nuclear RNA activating complex, polypeptide 2	protein-coding	7.33397386834284	7.49556341358825	7.79956393251028	7.35747312338942	7.24318557102856	7.36957539758609	7.32948777088332	7.48650518940297	-0.196619050077305	0.310286039039421	0.622452228532409
Merged-chr11-16999624-4	chr11	16999526	16999726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	9092.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	6.53193380358258	6.64357385007476	6.74373177749604	6.9944012929884	6.3300010686189	6.57172188362148	6.34362871107568	6.21397831212545	-0.563768546389988	0.0135003403097981	0.0975475304954949
Merged-chr5-65198969-3	chr5	65198875	65199075	+	697.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153391)	promoter-TSS (NM_153391)	-721.0	NM_001359880	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	3.17939919088298	2.96043029208035	3.07261993863716	2.88040367139754	2.82806967280311	2.86368514441296	2.88304099580026	2.95399132107976	-0.613647093304225	0.31094329756696	0.623003793544621
Merged-chr10-127342499-4	chr10	127342404	127342604	+	931.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010296)	promoter-TSS (NM_010296)	-925.0	NM_010296	14632.0	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	4.53311505520777	4.57419815641331	4.36060808855581	4.41549865737359	4.66384663917964	4.39270618775328	4.8299951797453	4.40341371574188	0.269539175802188	0.46443414925851	0.745452017408793
Merged-chr2-164929242-4	chr2	164929133	164929333	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17483.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	5.2235466192125	4.98572870122272	5.49663379756032	5.35070237223293	5.10232176977236	4.93242820483426	5.00327557588691	5.15856377629047	-0.419770611509374	0.178715952133496	0.474622145993212
Merged-chr10-75222086-4	chr10	75221995	75222195	+	929.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001145826, exon 2 of 19)	5' UTR (NM_001145826, exon 2 of 19)	9705.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	4.54512325936756	4.62509146292915	4.45910921932265	4.2641897130682	4.76453400694615	4.87474791860391	4.68112491355157	4.70039192118668	0.637480523382582	0.0704303875709925	0.284366935625651
Merged-chr1-159198791-4	chr1	159198726	159198926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-33374.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	5.91346292243699	6.40789232754736	6.25946422156885	5.96891175899373	5.50175152771343	6.32284385452841	5.99521235949637	5.7086571638145	-0.379151993807759	0.195983033698789	0.496914343164112
Merged-chr16-75855631-4	chr16	75855534	75855734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53632.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	8.45292620697258	8.47249851641637	8.33846496481747	8.59071829072871	8.49260109410586	8.4597452475265	8.34809515901883	8.1931187648196	-0.114760880715211	0.471478342705746	0.749913006535101
Merged-chr17-33089468-4	chr17	33089378	33089578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001024950, exon 1 of 4)	exon (NM_001024950, exon 1 of 4)	111.0	NM_001024950	240068.0	Mm.121392	NM_001024950	ENSMUSG00000067424	Zfp563	D10628|D130054H01|NTfin7|Zfp413	zinc finger protein 563	protein-coding	6.22572723866461	6.45856370075901	6.52509050248826	6.26346458879082	6.14716255885469	6.5687467253169	6.23375908444983	6.24200644650946	-0.103321133998195	0.657464314707946	0.857331405988975
Merged-chr9-83568313-4	chr9	83568214	83568414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	19976.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	5.67107106203203	6.03597161123494	5.51762295358399	5.753455442649	6.52247026981585	6.47946896865237	6.59671242586328	6.45008097398472	1.1450772848774	1.79013454700072e-06	5.91825299214883e-05
Merged-chr4-124708701-4	chr4	124708606	124708806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010213)	TTS (NM_010213)	-6155.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	6.9386438709686	7.06026086472453	6.69323896185898	6.56523970227576	6.91731889468708	7.03895110918351	6.46382706528689	6.34254400425833	-0.135529554712169	0.590709526967794	0.821188638407585
Merged-chr17-48409045-4	chr17	48408954	48409154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357903)	promoter-TSS (NM_001357903)	766.0	NM_001110832	18044.0	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	6.71082988257242	6.95050599887138	6.7270967791148	6.78315679447518	6.91261798356425	7.07147097307707	6.77967989468759	6.95506011768805	0.187237190359766	0.343812202613776	0.652400862942763
Merged-chr12-73876546-4	chr12	73876433	73876633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-24791.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	5.33348065848088	6.04974021780737	5.45887311927257	5.05390477208281	6.04954594040541	5.89992528352459	5.33993034272979	5.62154117125683	0.395535395656312	0.255251823723962	0.566852976271238
Merged-chr3-145670942-4	chr3	145670839	145671039	+	869.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-20954.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	3.85983634251925	3.81417471994418	3.74600034383383	4.11262174976725	4.42702413424099	4.08840400075975	4.04542622975053	4.23522682233012	0.796588036266968	0.0724603071723184	0.28934935227032
Merged-chr5-140731246-4	chr5	140731130	140731330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	7103.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	6.29399721108746	5.97854076913236	5.94613805271855	6.2458530074049	6.1473586208804	6.00108285494766	5.91582422574573	6.71193554434111	0.158875023797719	0.56584091451863	0.807783748011785
Merged-chr1-64929243-4	chr1	64929142	64929342	+	962.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	RMER1B|Other|Other	27582.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	4.78031188384747	4.60226806387704	4.66854814279839	4.5254703163834	4.6945540050504	4.43940576673384	5.01440677675907	4.77790181835268	0.2365089583972	0.50560535262617	0.771490383179947
Merged-chr14-21299947-4	chr14	21299847	21300047	+	892.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 6 of 10)	intron (NM_134079, intron 6 of 10)	-199823.0	NM_001205241	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	4.7423732602281	4.4585690738258	5.43376200318294	5.50481649848169	4.4031301781241	4.28482145561338	4.63902558605192	5.14623110716912	-0.903076736088959	0.0472178244015938	0.223686007108918
Merged-chr12-84217649-4	chr12	84217555	84217755	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	1226.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	5.22431113337636	5.35626054362646	5.09452039886018	5.43486922630838	5.2798286359185	5.00805956778974	5.3169904283843	5.05625618039982	-0.217440395472543	0.473724716586836	0.751353302182328
Merged-chr2-58920768-4	chr2	58920691	58920891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	L1MA6|LINE|L1	165607.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	4.65517861132323	5.47963509684176	4.90577450183446	4.86073162613753	4.92432530572841	5.18983641537534	5.05774811519305	5.42363746535256	0.271440625713149	0.451089707469998	0.735774833837515
Merged-chr17-73038682-4	chr17	73038568	73038768	+	960.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-69317.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	4.41158903449574	3.97441337912824	4.64259686015903	4.5906309811761	4.39976256302521	4.0285621844871	4.47283584250783	4.56737287271349	-0.116183569711056	0.784792448871624	0.916242668033676
Merged-chr17-5440547-8	chr17	5440459	5440659	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027457)	promoter-TSS (NM_027457)	-299.0	NM_027457	70544.0	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	4.83030959220815	4.61661117495385	4.9034287333799	4.56008539969285	4.56273242850685	5.00590976651875	4.87954620618638	5.41185918759404	0.54318716354606	0.143128372552941	0.421297445881944
Merged-chr12-100004794-4	chr12	100004700	100004900	+	959.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	MTE2a|LTR|ERVL-MaLR	40301.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	4.57304548096233	4.22843565598116	3.90494018685884	4.42985461138984	4.4021530376301	4.14955108963322	4.65808629168598	4.77629628913721	0.471241395442111	0.270764718168499	0.582593085895698
Merged-chr14-47541883-4	chr14	47541783	47541983	+	930.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172599, exon 10 of 10)	3' UTR (NM_172599, exon 10 of 10)	26551.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	4.21397345901969	3.58242817681079	4.03324464937197	4.21430291829099	4.31953067152355	3.82278632606413	4.19540406851149	4.16903595126355	0.266527292772714	0.569757397229534	0.80955922161666
Merged-chr3-96938931-4	chr3	96938824	96939024	+	834.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12873.0	NM_008123	14616.0	Mm.258183	NM_008123	ENSMUSG00000049908	Gja8	Aey5|Cnx50|Cx50|Lop10	gap junction protein, alpha 8	protein-coding	3.69138836368413	4.09934330061117	3.69188599022903	3.60320794701956	3.82289552385885	3.81081608025952	3.62175932095162	3.98451126194559	0.100461575216658	0.832891840103955	0.936153248426439
Merged-chr19-26604181-3	chr19	26604077	26604277	+	807.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011416)	promoter-TSS (NM_011416)	-983.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	3.27311761361878	3.37745948626304	3.15692914248367	3.22928585959063	2.976983359442	3.06880193260075	3.46340766285086	3.15536663454418	-0.323223963502242	0.570557502426686	0.810160239092505
Merged-chr3-31408332-4	chr3	31408226	31408426	+	908.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-98007.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	4.03305520756769	4.12223819490837	4.13029217694094	4.35122789905797	4.22235094842155	3.81160046258216	4.11248677948901	4.37980006286358	-0.0616702704408481	0.885887940651	0.95718457248159
Merged-chr14-71334230-4	chr14	71334124	71334324	+	974.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	82951.0	NR_046076	100043132.0	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	4.90208911645754	5.27850203759018	5.05764916396318	5.16568174411546	5.41876996336886	5.68516204653723	5.55929466065375	5.28711445523111	0.672933805523477	0.0235585839116547	0.142540949236948
Merged-chr9-45828663-4	chr9	45828555	45828755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081373)	promoter-TSS (NM_001081373)	-17.0	NM_001081373	214552.0	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding	6.84096033644305	6.6406971212696	6.26458497585042	6.59847512456612	6.76160188631425	6.75485329578659	7.06794074540332	6.55687431524255	0.2793472779452	0.224742173487084	0.533212998454623
Merged-chr14-26639422-4	chr14	26639335	26639535	+	902.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	1301.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	4.36279741706161	4.47234374310604	4.64583686024295	4.02732356483398	4.55396514257454	4.62354112869346	4.38790919805713	4.52943014492622	0.341481507590895	0.386434047397031	0.687615345724546
Merged-chr6-120540082-3	chr6	120539980	120540180	+	765.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8781.0	NM_144815	214932.0	Mm.255322	NM_144815	ENSMUSG00000058979	Hdhd5	A930002G03Rik|Cecr5	haloacid dehalogenase like hydrolase domain containing 5	protein-coding	4.05997476264707	4.06380355825487	4.10824329196528	4.60199034108389	3.82044642157663	4.13452636912655	4.09045524578839	4.008745128844	-0.617428838320245	0.169195696028415	0.46170705970244
Merged-chr9-70830334-4	chr9	70830249	70830449	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	104459.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	5.52394393896839	5.6279681078636	5.19415494051322	5.17203365836448	5.73883217935886	5.43743817680617	5.35830185822991	5.41054860038623	0.211315840136606	0.481782590916077	0.756798336874968
Merged-chr18-38354341-6	chr18	38354227	38354427	+	940.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15334.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	4.58335774635813	4.10478919528318	4.28087182517913	4.30565419798953	3.95714119257346	4.21889724393612	4.07770637202008	4.40181862933533	-0.401267308884578	0.336481167529191	0.646469256736134
Merged-chr7-109631373-4	chr7	109631288	109631488	+	862.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14241.0	NM_029811	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	3.6383795208931	3.84493823841091	3.58266763241621	3.69123327891416	3.86951677082146	3.37274001175119	3.77808286280708	3.92998498715574	0.196343152188247	0.687794321505139	0.872494020965841
Merged-chr1-90973433-4	chr1	90973341	90973541	+	979.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3821.0	NM_008998	19329.0	Mm.279780	NM_008998	ENSMUSG00000026304	Rab17	AW413472	RAB17, member RAS oncogene family	protein-coding	4.84311036103241	5.11416327552873	4.7175716893689	4.88671963384169	5.47623780663824	5.42523312314888	5.0062266780834	5.27854438122505	0.777131224699326	0.0144480383522	0.102134960956525
Merged-chr12-99965798-4	chr12	99965724	99965924	+	969.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_146037, exon 2 of 3)	5' UTR (NM_146037, exon 2 of 3)	1325.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	5.08152537821357	4.97189731370399	5.50827540752356	5.27074421008927	4.79917704300052	4.82817268390412	5.3005613900466	5.2667453328811	-0.300421149798661	0.374428197549103	0.677784078373359
Merged-chr4-129051412-4	chr4	129051316	129051516	+	948.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6855.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	4.52482210321336	4.77689666974683	4.47981790338837	4.49850796870844	4.89172959913892	5.2070319615546	4.4599013455508	5.03429394861037	0.72537104206417	0.0473958077651619	0.22424795273308
Merged-chr7-29125194-1	chr7	29125094	29125294	+	560.5	f0_c57.idr	promoter-TSS (NM_009109)	promoter-TSS (NM_009109)	-43.0	NM_009109	20190.0	Mm.439745	NM_009109	ENSMUSG00000030592	Ryr1	AI528790|RYR-1|Ryr|skrr	ryanodine receptor 1, skeletal muscle	protein-coding	3.4719894219314	3.40221468825302	3.78264463161579	3.33777377553053	3.62338111518531	3.70232411814997	3.81011848712754	3.34859468724391	0.421801310886438	0.409291618213508	0.704924233683108
Merged-chr8-123044170-4	chr8	123044056	123044256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045268, exon 1 of 1)	non-coding (NR_045268, exon 1 of 1)	1581.0	NR_045268	100503178.0	Mm.294938	NR_045268	ENSMUSG00000099881	2810013P06Rik	-	RIKEN cDNA 2810013P06 gene	ncRNA	8.1825676953225	8.2611392546483	7.56048642475439	7.91157540369454	8.02251929354058	8.0481128400774	7.69162550159324	7.73226367104999	-0.156946467680144	0.452199485327591	0.736580785530977
Merged-chr6-114894667-4	chr6	114894558	114894758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	27163.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	6.03292438424458	6.04269739186675	6.2550501498614	6.59095731863329	5.88908988766018	5.99767841418621	6.24118673638087	6.11455660509891	-0.319850194706658	0.222016700987484	0.530047563717821
Merged-chr4-59459493-4	chr4	59459411	59459611	+	937.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Zaphod|DNA|hAT-Tip100	-20878.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	4.61080540747224	4.45267642177044	4.56692379539067	4.2916942471632	4.811366693235	5.13039862880051	5.30439672142995	5.35283512186126	1.40729782991202	5.1119483744686e-05	0.00115292577105925
Merged-chr3-109031661-3	chr3	109031542	109031742	+	979.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-4035.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	3.14895581165855	2.98416365127921	3.71960137549612	3.40519692812195	2.82474862249173	2.92090288303148	2.72557499815282	3.26217805416647	-1.60005381628498	0.0203030045887751	0.129284985115801
Merged-chr4-129585242-6	chr4	129585110	129585310	+	893.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6630.0	NM_182783	230766.0	Mm.20377	NM_182783	ENSMUSG00000050493	Fam167b	SEC	family with sequence similarity 167, member B	protein-coding	3.09924778170387	3.24462897003854	3.09957454264855	2.92942628621069	3.61007339657109	3.75995168012917	3.8435339198024	3.73027352935386	2.29977490877629	1.04407823719719e-05	0.000286383217130861
Merged-chr8-76897146-4	chr8	76897045	76897245	+	974.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028579, intron 1 of 1)	intron (NR_028579, intron 1 of 1)	3476.0	NR_028579	102640923.0	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	-	predicted gene 10649	ncRNA	4.51708795995954	4.62815458090183	4.23870283095496	4.92761982125093	4.91048768960131	4.20051553800142	4.31979148592005	4.77828237513993	-0.0408748085214001	0.924291852961408	0.971964228124816
Merged-chr1-165766058-4	chr1	165765937	165766137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 2 of 4)	intron (NR_149310, intron 2 of 4)	2279.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	6.28969520014244	6.43202871335731	6.45232950162214	6.48499043795245	6.31417612334359	6.54099885253922	6.51604589647068	6.20737595683091	-0.0378613976963699	0.863513717967054	0.948621655598243
Merged-chr5-64676432-4	chr5	64676328	64676528	+	964.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65729.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	5.6126632178293	5.91774569651552	5.68651186253638	5.38222789409337	5.39075757488722	5.65661620964147	4.99550010322627	5.01600160668394	-0.631467359062993	0.0504029041454934	0.232928026370788
Merged-chr1-65090586-4	chr1	65090556	65090756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31B|LTR|ERV1	-8366.0	NM_144761	12965.0	Mm.440053	NM_144761	ENSMUSG00000073658	Crygb	Cryg-3|DGcry-3|Nop	crystallin, gamma B	protein-coding	6.82011571017177	6.93440229962186	6.47210955904431	6.92029327625591	6.60242731815501	6.66650178237656	6.45628460571077	6.08245556939986	-0.479409987576469	0.0437021116676172	0.212811972798066
Merged-chr11-97428270-4	chr11	97428184	97428384	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21876.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	6.01834798386582	5.85739166752373	5.7570914718578	6.1015838541163	5.65342174468935	5.54082909697875	5.72782182315796	5.21804854727279	-0.652753696266325	0.017585812224615	0.117285311360077
Merged-chr10-43856529-4	chr10	43856437	43856637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	30630.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	7.12733051285017	7.12043912131458	7.20746305535458	7.38876306110773	7.26190293376913	7.0770099973131	7.08112093442521	6.94920756425486	-0.16579976910679	0.392154773844742	0.691774675781771
Merged-chr13-81783774-4	chr13	81783689	81783889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007684, intron 1 of 4)	CpG	542.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	8.55165118582621	8.6013559983835	8.66451618165152	8.6975886450347	8.83249776848774	8.72590105433534	8.99460671334615	8.71120802545095	0.237206068629615	0.113997000494272	0.373450486813086
Merged-chr9-60794429-3	chr9	60794307	60794507	+	973.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028283)	promoter-TSS (NM_028283)	-35.0	NM_001357408	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	4.56701953656955	4.52578593027025	4.32532888020655	4.64019465095826	4.21986321434976	4.45281309093806	4.16768700148866	4.18241866053456	-0.652776573819793	0.08976934862095	0.327189946514957
Merged-chr15-3251157-3	chr15	3251067	3251267	+	761.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19600.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	3.61610660715744	3.38539464281184	3.20006673391123	3.71286346090284	3.57805812850814	3.44638573055952	3.87163651591864	3.45212994328813	0.303549654647359	0.572945648147133	0.811527635951382
Merged-chr2-5035224-4	chr2	5035143	5035343	+	846.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 7 of 13)	intron (NM_001356487, intron 7 of 13)	-22452.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	4.52138401262077	4.32646238413703	4.30668531349483	4.05793262811656	4.76750815038208	4.69354056399972	4.19161463604401	4.59598344918664	0.65960308998278	0.0962793222957979	0.340048212247575
Merged-chr5-38086243-3	chr5	38086140	38086340	+	647.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	47010.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	2.74879943664484	2.6045636348325	2.60007424168388	2.42084489661938	3.14026292290607	3.0596112849492	3.25318084844442	3.06126368855704	2.66061857999596	3.6146056826875e-05	0.000852216024802961
Merged-chr7-89441320-3	chr7	89441213	89441413	+	911.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15007.0	NR_102276	101521.0	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	3.8019125529128	3.91351151272111	4.08507069608959	4.19095024687446	3.64996345035166	3.92245939131013	3.62086119824457	3.80030608117648	-0.774951187207397	0.0932059919238368	0.33396976084303
Merged-chr13-60627629-1	chr13	60627529	60627729	+	774.0	f0_c57.idr	intron (NM_134062, intron 2 of 26)	B4A|SINE|B4	25418.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	4.15112131632666	3.98150808668963	3.84487495727503	3.95055882708586	3.90345112379731	4.32342569257582	4.37819151433646	4.31927136001323	0.648989603346918	0.126648353209174	0.395674769095591
Merged-chr16-43398034-4	chr16	43397927	43398127	+	994.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	22169.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	5.73509298734189	5.34672734204101	5.99529986505081	6.27663043424791	5.48302197617806	5.15842713652768	5.60763237685604	5.40572037983251	-0.788616023400603	0.0145545965910341	0.102653748588309
Merged-chr9-84545571-4	chr9	84545451	84545651	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-228847.0	NR_040739	75253.0	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA	4.8028582921255	4.9450310587524	4.70108789877455	4.89785803171337	6.84032884907864	5.87054954377446	6.35622234255507	6.59137829541513	2.67158000180489	6.38043934869863e-17	1.39739474584929e-14
Merged-chr14-20640962-4	chr14	20640862	20641062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	15578.0	NM_021508	59011.0	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	7.25985605584667	7.48244723844421	7.37543953749156	7.10532719189367	7.60436660253356	7.35985620576786	7.28828527640863	7.30928284442542	0.132429091577073	0.495071805025725	0.76551980639526
Merged-chr14-87215303-4	chr14	87215219	87215419	+	883.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74095.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	4.81941682906684	4.6359540044817	4.3309658379615	4.85235472545373	4.68603885520546	4.46019472871246	4.6169688980456	4.67394973025094	-0.154733272489473	0.67257209703617	0.865267714888623
Merged-chr18-56699197-4	chr18	56699097	56699297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8616.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	5.67961726250251	5.64586583349509	5.85145032719427	6.14299941781828	6.75989330114549	6.43842489132745	7.04965347690349	6.98669035660781	1.4243539348395	8.42277577442996e-08	3.66010230066026e-06
Merged-chr16-11456485-4	chr16	11456371	11456571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	50823.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	7.77168855204392	8.0416474159157	7.90723493647648	7.35391997351706	8.43643862438097	8.70462041417762	8.50937069444283	8.4790838657184	0.960033813037593	1.088936286377e-06	3.7864873438216e-05
Merged-chr10-80881472-3	chr10	80881379	80881579	+	855.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081688, intron 1 of 17)	B3|SINE|B2	1663.0	NM_001081688	432478.0	Mm.235302	NM_001081688	ENSMUSG00000059406	Tmprss9	Serase-1B	transmembrane protease, serine 9	protein-coding	3.29138090020671	3.70242842599225	3.41039456953749	2.906560682753	3.77506078053041	3.40712130508171	3.15159182792775	3.51706127468055	0.420346701738819	0.488333525750038	0.76118893988362
Merged-chr6-87002901-4	chr6	87002770	87002970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177762, exon 20 of 20)	3' UTR (NM_177762, exon 20 of 20)	-6966.0	NM_001170591	56748.0	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	6.85594384137593	6.81911495270931	6.3775199385453	7.16312015745889	6.28427284232696	6.26293184321393	6.39981522054188	6.70228809000529	-0.614552700958956	0.0148692244965374	0.104181172402701
Merged-chr5-123573005-4	chr5	123572864	123573064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029929)	promoter-TSS (NM_029929)	51.0	NM_001359513	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	6.50084394935522	6.51582842499741	5.87338340766509	6.10331060571804	6.33186217985593	6.28177948461074	6.00919693443055	6.16291980501905	-0.0994098773345317	0.701590543306635	0.879767652498371
Merged-chr8-72295875-4	chr8	72295768	72295968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23194.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	8.24166333799949	8.49365493472037	8.8315766808083	8.66227217982875	8.34454622566505	8.49142079173698	8.7096958234292	8.5331061062772	-0.0671652841034159	0.713249713282471	0.885280331946177
Merged-chr6-48593838-4	chr6	48593741	48593941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001079901)	promoter-TSS (NM_001079901)	-42.0	NM_001079905	58887.0	Mm.219183	NM_175099	ENSMUSG00000052751	Repin1	AI425994|Ap4|E430037F08Rik|Zfp-464|Zfp464	replication initiator 1	protein-coding	6.82687240151491	6.68709228329948	6.59118700638201	6.75024714880953	6.54470778845628	6.71842467010754	6.83306201217435	6.86303154209841	0.0282020669408012	0.891169094280375	0.959267534128525
Merged-chr11-114568928-6	chr11	114568809	114569009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-99634.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	5.14232272929319	4.88074428956775	4.91623528280157	4.75554491656533	4.90466248631886	4.94084226730077	5.08826221062474	4.87688325500414	0.0740387480618287	0.819133627127892	0.930742663420535
Merged-chr10-121603705-3	chr10	121603614	121603814	+	872.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 17 of 24)	intron (NM_001359618, intron 17 of 24)	-16920.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	3.21635633359484	3.00071861133791	3.5852957294362	3.46813493873058	3.14083418043215	3.32890566778944	3.32033124428192	3.27464834563823	-0.273860733211775	0.630181148146896	0.842667104605937
Merged-chr11-93941068-3	chr11	93940960	93941160	+	867.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134012, intron 15 of 15)	intron (NM_134012, intron 15 of 15)	14723.0	NM_001077529	18103.0	Mm.1260	NM_008705	ENSMUSG00000020857	Nme2	NM23-H2|NM23B|nm23-M2	NME/NM23 nucleoside diphosphate kinase 2	protein-coding	3.99742631322946	4.07688389409507	3.78844935314714	4.27799771036569	3.95957907837635	3.90811642566382	3.93246145272671	4.17543668925203	-0.176908616343248	0.689134610845849	0.873167176342573
Merged-chr4-132959668-4	chr4	132959551	132959751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14444.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	7.25148160189924	7.24022189631274	7.11811019122244	6.99004120554845	7.32783917465982	7.3414392767929	7.21648666378441	7.10121926226534	0.145947666839959	0.437665047943792	0.725862352569811
Merged-chr8-111343370-4	chr8	111343263	111343463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5158.0	NM_029005	74568.0	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	6.07039948309458	6.28125732064347	5.624691917395	5.90224707109496	6.20910304756298	6.24692573185736	6.36806751846845	5.8876354670555	0.308375187232482	0.243554989093724	0.554610038028735
Merged-chr3-52105041-4	chr3	52104938	52105138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004176)	promoter-TSS (NM_001004176)	-32.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	6.32160642350912	6.37035749614652	6.18717897968138	6.22610773546913	6.59271145831439	6.48005590404027	6.49229542727303	6.00786955231807	0.213505662688228	0.366889652126578	0.671230012135118
Merged-chr5-31198653-4	chr5	31198474	31198674	+	888.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175311)	TTS (NM_175311)	3468.0	NM_001177901	101023.0	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	4.23896737980019	3.86397964626291	3.92695376943317	3.83594606680263	4.0136832861925	3.99674786067336	4.00699876942254	3.97425947740065	0.0914940054147467	0.831645717255839	0.935530786385672
Merged-chr5-146247863-4	chr5	146247736	146247936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153599, intron 1 of 12)	L1MB8|LINE|L1	16586.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	7.23697064274517	7.36198897990814	7.37437123868319	7.36865618877509	7.23339170453368	7.29967245700344	7.38626574897964	7.49186043242654	0.0177670602029534	0.920407400625637	0.970486747387376
Merged-chr10-8898483-3	chr10	8898383	8898583	+	925.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12413.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.39171753935272	3.60751529155402	3.64337855817354	3.72648580251536	3.26252395546143	3.11754237368676	3.07136247446959	3.14726073849945	-1.66377266298758	0.0034657516622734	0.0357831066969768
Merged-chr10-41517990-4	chr10	41517884	41518084	+	897.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie7|DNA|hAT-Charlie	-1516.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	4.39818161866594	4.13709587178191	4.1540134429087	4.07762066468592	4.15871235775925	3.91320547611794	4.09037945289915	3.95754923122095	-0.386166500586254	0.356952220074422	0.663238634370609
Merged-chr1-45925565-4	chr1	45925471	45925671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016917)	promoter-TSS (NM_016917)	23.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	6.89149927940454	6.2033440458796	6.34928063279818	7.05981368500406	6.31114840912699	6.46871727683794	6.72536697918262	7.10664717606291	0.00100267665147652	0.997273862063075	0.998908860902246
Merged-chr19-43496075-4	chr19	43495984	43496184	+	911.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_031396, exon 11 of 11)	3' UTR (NM_031396, exon 11 of 11)	28521.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	4.61831226892727	4.45588191404008	4.34673728465722	4.37429074054222	5.26604918613677	5.14440677258922	4.6373808585731	4.53147722582403	1.03907765708756	0.00623236480695213	0.0558215042901781
Merged-chr1-35813846-4	chr1	35813758	35813958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-254542.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	6.9409649337596	7.39519223621333	7.30250247637187	7.53746597073485	7.22834143427932	7.39317153603474	7.35638107157091	7.27636925267013	-0.0182332816319517	0.92803708871072	0.97384905516986
Merged-chr9-111049274-4	chr9	111049157	111049357	+	947.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7987.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	4.78878653113917	5.15016869279433	4.86330924351255	4.68413351824679	5.11948818133015	4.41793996687666	4.97450366599652	4.70826951815163	-0.0664824211130434	0.857928570307606	0.946459256767953
Merged-chr7-143549185-4	chr7	143549070	143549270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008672)	promoter-TSS (NM_008672)	-50.0	NM_008672	17955.0	Mm.294625	NM_008672	ENSMUSG00000059119	Nap1l4	2810410H14Rik|AI316776|D7Wsu30e|Nap2	nucleosome assembly protein 1-like 4	protein-coding	8.57766059264236	8.75395551624964	8.52545463102795	8.66047168842686	8.76171653323559	9.03011806243763	8.87541017248811	8.66978472812076	0.255877600754291	0.102574025000733	0.351827126326482
Merged-chr3-27234683-4	chr3	27234585	27234785	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	51681.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	5.22118030096526	5.54734077025673	5.15564554477969	4.67760615458298	5.8457159614706	5.89521471754944	4.98736148719223	4.93000391841585	0.556090044315128	0.162352262099117	0.451532515295316
Merged-chr10-80598197-4	chr10	80598112	80598312	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-4668.0	NM_001100606	100113398.0	Mm.273170	NM_001100606	ENSMUSG00000113640	Adat3	A430024H01Rik	adenosine deaminase, tRNA-specific 3	protein-coding	4.74836945897299	5.03983728070468	4.61760001390166	4.63307438449915	5.26052085425844	5.40241697539267	4.88272320945767	5.33715657554727	0.908779636281211	0.00632158666804183	0.0563582436679045
Merged-chr3-14869968-4	chr3	14869866	14870066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007606, intron 5 of 6)	intron (NM_007606, intron 5 of 6)	6428.0	NM_007606	12350.0	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	6.46430358242679	6.12508218350726	5.99484910029012	6.43298807879837	6.70010398594833	6.58989142800617	6.96446397200529	6.67978353957535	0.671244581397977	0.00407027878855063	0.0405995479106285
Merged-chr19-10944138-4	chr19	10944052	10944252	+	917.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023731, intron 2 of 3)	MIR|SINE|MIR	5114.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	4.33382283372495	4.37864316667657	4.03825244523528	4.1057718692425	4.4690603620143	4.55087866756007	4.8699021149139	4.45977023510936	0.902287772300991	0.0198035079291212	0.127242633226839
Merged-chr10-26762703-4	chr10	26762599	26762799	+	972.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9813.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	5.46868609562294	5.5938523651544	5.20448789807	5.58143428140737	5.15124379839538	5.5604828375585	5.11226847622748	4.82412368605321	-0.531258084924048	0.0961384483309485	0.339783667599249
Merged-chr3-28146147-4	chr3	28146083	28146283	+	894.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-117031.0	NM_001163007	665113.0	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	4.40048009065667	4.29953187831517	4.40115299343721	4.59747828295862	4.83762710201763	4.65978355253296	4.38168598847798	4.52581280251299	0.398283147022442	0.289240539298929	0.601252115531934
Merged-chr16-55821106-4	chr16	55820990	55821190	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 2 of 12)	intron (NM_001159395, intron 2 of 12)	1048.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	4.96166827226025	5.46879232390863	5.33867059818919	5.25364265982516	5.53274017864434	5.62444198581961	5.3695915234441	5.10877552605122	0.276824575901703	0.365495405474672	0.670263241775691
Merged-chr6-51939272-1	chr6	51939172	51939372	+	550.5	f0_balb.idr	intron (NM_018773, intron 4 of 12)	intron (NM_018773, intron 4 of 12)	73277.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	3.42431028813632	3.00353695313684	3.27463675747387	3.23242748484736	3.13562350066697	2.94220202911161	3.09313934242189	3.04043003756932	-0.718588230646684	0.217471018898583	0.524404419479038
Merged-chr14-120327289-4	chr14	120327183	120327383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	20831.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	7.42474292491443	7.70706522588314	7.5740798339235	7.64472690689573	7.49512286874367	7.63232104069155	7.30834560737608	7.24175938341184	-0.221722485605609	0.231016766871937	0.540514839562739
Merged-chr10-63024003-4	chr10	63023911	63024111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001079824)	promoter-TSS (NM_001079824)	-162.0	NM_001079824	432467.0	Mm.274784	NM_001079824	ENSMUSG00000020069	Hnrnph3	AA693301|AI666703|Hnrph3	heterogeneous nuclear ribonucleoprotein H3	protein-coding	7.97286435289741	8.02071717331099	8.07430250063238	7.62219444131241	8.13085113588849	8.21939654051395	8.0611484783269	8.15560261896804	0.281629280885528	0.110550049945644	0.367188147693932
Merged-chr17-70991994-3	chr17	70991835	70992035	+	876.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1419.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	3.32869125773801	3.37917732692261	3.61750467816967	3.05711637705512	3.15181888646264	2.99297746373022	3.01721489648445	3.15451693289103	-1.04053665466294	0.0811789443683118	0.309190333623542
Merged-chr10-69252952-4	chr10	69252852	69253052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252637, intron 4 of 10)	intron (NM_001252637, intron 4 of 10)	39758.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	6.7995799749107	6.72946705370938	7.12782001426394	6.84425780518652	6.99361264775701	6.84186874876515	6.80844277866463	7.14474492332482	0.107021678872656	0.604734278726238	0.828509474255204
Merged-chr3-96727597-4	chr3	96727507	96727707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028925)	promoter-TSS (NM_028925)	-4.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	8.36171095761966	8.46767405478714	8.1997922467073	8.27983567956381	8.18358538871147	8.34704065711968	8.33968305165211	7.88938893669722	-0.163930670561909	0.346359423660598	0.654667431081974
Merged-chr4-86925268-2	chr4	86925164	86925364	+	592.5	f0_balb.idr|f1_balb.idr	intron (NM_001290543, intron 5 of 5)	intron (NM_001290543, intron 5 of 5)	50850.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	3.07150265911456	3.06327295850279	3.0129053180466	3.11287157865447	3.01902929406644	2.99248161127521	3.11605282766501	2.81697857747597	-0.320016245282751	0.583334734812265	0.817051076495496
Merged-chr19-17130628-3	chr19	17130548	17130748	+	720.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	174530.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	3.52980224183509	3.1569100665935	3.31954094934198	3.44543428617622	3.31122559761078	3.24434921425459	3.30731797446141	3.4791075721852	-0.12464954616369	0.814567653145624	0.92840582625946
Merged-chr6-83673635-4	chr6	83673548	83673748	+	932.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144943, intron 4 of 5)	MLT1I|LTR|ERVL-MaLR	4209.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	4.38870177341672	4.42129715370013	4.88058579638379	5.13201046141381	4.68258335373824	4.57005448509191	4.78758977586179	5.06599051317972	0.053332056890336	0.894208517527703	0.960481560907683
Merged-chr15-59016594-7	chr15	59016479	59016679	+	975.0326539999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	T-rich|Low_complexity|Low_complexity	65447.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	3.46647043967359	3.49179998122143	3.52505252314936	3.2790115294319	3.44474161469894	3.75457178192507	3.33094883565632	4.1409940981797	0.837526583716872	0.11773468917441	0.379505363678351
Merged-chr18-68195215-4	chr18	68195098	68195298	+	936.9874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-32748.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	4.81403511363155	4.94351615495879	4.62008590107078	4.18104134478869	4.84894277878151	5.05681788146464	4.8612476544409	4.65841781505693	0.428706290824964	0.264148314768508	0.576312589873508
Merged-chr11-119728373-2	chr11	119728273	119728473	+	934.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 4 of 33)	RLTR11D|LTR|ERVK	105992.0	NR_045313	319454.0	Mm.442144	NR_045312	ENSMUSG00000085081	Rptoros	A430071A18Rik	regulatory associated protein of MTOR, complex 1, opposite strand	ncRNA	3.3867704515888	3.06466065018896	3.17352659592337	3.07703129993042	3.26317162704265	3.0252458981792	2.97700850280376	3.28304461425984	-0.102985793342426	0.857813511874173	0.946392149155271
Merged-chr5-24025131-2	chr5	24025026	24025226	+	884.1666869999999	f0_balb.idr|f1_balb.idr	intron (NM_053090, intron 1 of 10)	intron (NM_053090, intron 1 of 10)	5186.0	NM_001310471	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	3.51094815574849	3.7333033549331	3.87733806252287	3.9659016356842	2.85622612110678	3.11673067855631	2.9940910002572	3.00116638020771	-3.58420165341707	8.45534865157181e-07	3.00771245212509e-05
Merged-chr2-170345685-4	chr2	170345576	170345776	+	991.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10685.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	5.52139070669613	5.13529882964147	5.38268378482523	5.64385516658963	5.37935683758782	5.22690097114843	5.66593184242154	5.46449337919173	-0.0057612016654081	0.984639405487926	0.994362445458126
Merged-chr11-100472801-4	chr11	100472697	100472897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172565)	promoter-TSS (NM_172565)	-15.0	NM_172565	217194.0	Mm.183320	NM_172565	ENSMUSG00000048732	Klhl11	BC011167	kelch-like 11	protein-coding	5.93662678504901	6.41254512643179	5.40347032206707	5.69806283181639	6.17005540587104	5.87524697889036	5.74548213046207	5.46419015517967	-0.111975501989138	0.733279182203707	0.894443416491688
Merged-chr17-15715400-4	chr17	15715312	15715512	+	845.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007690, intron 2 of 35)	B3|SINE|B2	10445.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	3.97620589237288	3.53129975794442	3.87810296016186	3.74036289750285	3.86984195639374	3.83518958295547	4.17465516966167	4.26910915721155	0.725008447976829	0.11340894392528	0.372358549741879
Merged-chr6-83659518-3	chr6	83659421	83659621	+	977.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3405.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	5.56058988689545	4.70115435701208	6.43897337562835	6.88013418183625	4.48745626394579	4.7499235762639	4.82187181243692	4.88669307140369	-2.42392425584591	0.000592503059283553	0.00885598787654586
Merged-chr2-45653173-4	chr2	45653087	45653287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-43418.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	5.82532430032589	5.77242593209534	5.67787702791622	5.60174676997373	5.74406912465848	5.68767882511072	5.96974293087426	6.01633275642054	0.23935162107273	0.349786806678684	0.657289662150058
Merged-chr5-24652235-4	chr5	24652151	24652351	+	719.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6798.0	NR_003953	72252.0	Mm.87446	NR_003953	ENSMUSG00000038165	1700022A21Rik	-	glycerol-3-phosphate dehydrogenase 1-like pseudogene	pseudo	4.31056181366875	4.25103827741372	4.11759854178341	4.5137066073407	4.25395257976764	4.18976349330406	4.63981686794032	4.62489181604038	0.279462708940215	0.491020201999542	0.762703477030731
Merged-chr2-151533823-4	chr2	151533718	151533918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-8665.0	NR_126058	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	5.67156244593309	5.94928243338863	6.20835164448285	6.18542201362211	6.18981802307764	6.17874616950892	6.23196326964016	6.34720861102624	0.312902923356859	0.206267781266916	0.510210725476936
Merged-chr7-81008510-2	chr7	81008410	81008610	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178707, intron 1 of 9)	BGLII_B|LTR|ERVK	14826.0	NM_178707	233410.0	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	A730014M16Rik|Znf592	zinc finger protein 592	protein-coding	2.90317872908674	3.31402895264467	3.21700087300783	2.32865692769427	3.20044172847088	3.15234816662373	3.25724087878451	3.09853268556877	0.537530619220364	0.666801109306959	0.862118979153907
Merged-chr3-89177377-4	chr3	89177241	89177441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309909)	promoter-TSS (NM_001309909)	-50.0	NM_001309910	24045.0	Mm.257052	NM_011886	ENSMUSG00000028049	Scamp3	Sc3	secretory carrier membrane protein 3	protein-coding	7.7315295991937	7.61692193536971	7.81573531190791	7.59293815445976	7.54853556139447	7.67975894013371	7.31689994151261	7.31627259796989	-0.279309473781929	0.126251555797717	0.394853444200069
Merged-chr7-17024980-4	chr7	17024873	17025073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011155, intron 1 of 12)	intron (NM_011155, intron 1 of 12)	2941.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	6.437491092013	6.3725052150014	6.74848842348657	6.99023117174179	6.85030308015434	6.72257084055521	7.30923366149244	6.4882403742563	0.291606044493808	0.272653752846033	0.58409743796508
Merged-chr10-98915650-1	chr10	98915550	98915750	+	1000.0	f0_balb.idr	intron (NM_001359507, intron 1 of 21)	CpG	498.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	5.20549378282339	5.1966799481875	5.47718228094837	5.30197051450384	5.36282009322611	5.47848926742627	5.2457271484287	5.82473171050058	0.342312358650209	0.250013299638345	0.561127915062205
Merged-chr10-13837187-4	chr10	13837116	13837316	+	876.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	31741.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	4.83355297954299	4.69011656777956	4.48916291406539	4.64918853726638	3.99195780932673	4.08174301177513	4.15780786505447	4.12147914089604	-1.42997666371807	0.000294182768987961	0.00499038019871165
Merged-chr12-112605959-2	chr12	112605859	112606059	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 10 of 22)	intron (NM_198411, intron 10 of 22)	-14088.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	3.29836033416773	3.55628823651539	3.47072581883883	3.16170163672844	3.5183292874278	3.13960994345205	3.78131587293145	3.2971201427355	0.286733564494039	0.608327669267932	0.830555015360843
Merged-chr19-57623872-2	chr19	57623777	57623977	+	936.5	f0_balb.idr|f1_balb.idr	intron (NM_181415, intron 1 of 28)	intron (NM_181415, intron 1 of 28)	12843.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	3.87804876450637	3.88085499934764	4.45200345242634	4.22646629285731	3.36136606980602	3.3956563663567	3.47455653438593	3.41887280985729	-2.33042224766995	1.45193010970617e-05	0.000384904779436779
Merged-chr15-55268754-2	chr15	55268654	55268854	+	932.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38996.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	3.09854211779852	2.99148117293114	2.76736158632049	3.13254050401346	2.9049170021653	3.08544893849945	3.08724687723889	3.40723870092011	0.478422440955031	0.435543082401539	0.724673236611948
Merged-chr2-167634598-4	chr2	167634501	167634701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2596.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	7.48530567043481	8.01400372575639	7.22071926964918	7.29911367400037	7.86106762225211	7.9304654499534	7.53274842866705	7.67619922455236	0.28468011766754	0.211359682249132	0.515972920864297
Merged-chr7-34672160-4	chr7	34672061	34672261	+	974.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16652.0	NM_001360818	233107.0	Mm.76761	NM_146188	ENSMUSG00000030499	Kctd15	BC031749	potassium channel tetramerisation domain containing 15	protein-coding	5.48648980001272	5.79182552507604	5.40000817262393	5.55637804026975	5.7367263629495	5.51489022591736	5.64185799192163	5.12942308469091	-0.0594605433391279	0.840100025939231	0.939207761298117
Merged-chr16-85133668-4	chr16	85133601	85133801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	40006.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	7.12036710804485	7.48285239576648	7.27638111022021	7.01191548704236	7.25254053435708	7.25101303932587	7.52580620269688	6.43077188702207	-0.0756693990675065	0.770864389519079	0.910321191255463
Merged-chr19-46641631-4	chr19	46641513	46641713	+	959.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177813, intron 1 of 3)	intron (NM_001177813, intron 1 of 3)	18212.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	4.6117105937689	4.66584011439914	5.27158757572792	5.22664762325059	4.63516608213129	4.5599626128835	4.63346748929948	4.88065852174557	-0.630364971245291	0.093383532699052	0.334219737655465
Merged-chr9-35027870-4	chr9	35027769	35027969	+	876.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190912, intron 12 of 15)	intron (NM_001190912, intron 12 of 15)	-88859.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	4.73400721377308	4.69594870781929	4.66475852830164	4.29607247941472	4.55221020317198	4.36943550252734	4.31882102710889	4.23875300277894	-0.485188084399943	0.2150742806162	0.521046864244511
Merged-chr11-49157628-3	chr11	49157527	49157727	+	787.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2389.0	NM_146276	258273.0	Mm.377407	NM_146276	ENSMUSG00000048378	Olfr1394	MOR280-1	olfactory receptor 1394	protein-coding	3.36387657299988	3.24522500044038	3.4182283953963	3.57335157236534	3.41513460376771	3.42012146113063	3.11340311651752	3.12159507991142	-0.47517805593083	0.390077874814284	0.690245822100553
Merged-chr17-71143455-4	chr17	71143315	71143515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-40117.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	5.34147474959278	5.1812843069124	5.73803762745422	5.85647691639932	5.38294274975503	5.4232399088866	5.51460693340476	5.33869484044853	-0.277178580527109	0.367479855800265	0.671911650851731
Merged-chr7-44748450-4	chr7	44748354	44748554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133945)	promoter-TSS (NM_133945)	-63.0	NM_001289839	243963.0	Mm.382935	NM_178734	ENSMUSG00000048012	Zfp473	D030014N22Rik|Znf473|zfp-100	zinc finger protein 473	protein-coding	8.05136325977395	8.38138180894734	7.75572134740424	8.02505682312398	8.28078650034574	8.11987264851407	8.17485358427272	8.07992124566589	0.120211070825447	0.515290599482128	0.77746883119676
Merged-chr10-75170623-4	chr10	75170514	75170714	+	963.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081412, intron 16 of 22)	intron (NM_001081412, intron 16 of 22)	-41459.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	4.46575859353968	4.32541649769379	4.75571790005991	4.6316559240903	4.89348310539846	4.73183900822429	4.83848445767991	5.01805800228683	0.665625275617382	0.0557734939334587	0.24721768439441
Merged-chr12-79356364-4	chr12	79356295	79356495	+	944.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	59044.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	4.60544399231962	5.26166089163159	4.56046295749298	4.32281829031959	5.26416504365239	4.98999348283497	4.7906155236341	5.28477613879402	0.724897828754726	0.0660031944744463	0.273584518693628
Merged-chr4-149698571-5	chr4	149698489	149698689	+	979.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164050, exon 1 of 24)	5' UTR (NM_001164050, exon 1 of 24)	119.0	NM_001164050	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	4.73778203770612	5.3780281820064	5.0757819054774	4.86982362902176	5.03851771681019	4.95917992593533	4.91300568702698	5.41573613741841	0.11834554880629	0.731949046232367	0.893842682027583
Merged-chr3-119933444-4	chr3	119933336	119933536	+	986.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-150048.0	NM_019550	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	4.93173256031811	4.98058113236097	4.71751906003684	4.72136014142931	4.89462024054896	4.81194215999624	4.69551716486325	4.45636460934556	-0.21736760244334	0.53221681360793	0.78795807924369
Merged-chr18-24709477-4	chr18	24709396	24709596	+	943.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175276, exon 1 of 27)	5' UTR (NM_175276, exon 1 of 27)	873.0	NM_001289655	225288.0	Mm.329322	NM_175276	ENSMUSG00000034295	Fhod3	A930009H06Rik|FHOS2|mKIAA1695	formin homology 2 domain containing 3	protein-coding	4.38204712259792	4.28147373700655	4.51094859400163	4.76607103491653	4.53214172109823	4.79714022559854	4.56816158164517	4.02147358871018	-0.00674172200470749	0.987091757876224	0.995258250959001
Merged-chr7-67243019-3	chr7	67242927	67243127	+	876.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291195, intron 8 of 10)	intron (NM_001291195, intron 8 of 10)	20411.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	3.71331501275757	3.43398188500899	3.61646170156849	3.64477354406515	3.57803896249032	3.44719271985544	3.3233895043701	3.50902826459127	-0.441260002375418	0.377701438806297	0.680394065568127
Merged-chr1-57378155-1	chr1	57378055	57378255	+	784.0	f0_c57.idr	promoter-TSS (NR_037999)	promoter-TSS (NR_037999)	535.0	NM_028546	73467.0	Mm.263673	NM_028546	ENSMUSG00000038323	1700066M21Rik	AI428479	RIKEN cDNA 1700066M21 gene	protein-coding	4.11367951533258	3.90719965644319	4.4061042171311	4.06453637429503	4.11866152931376	3.97780471605175	4.04925081874425	4.32659449237578	-0.00678797300083359	0.987231121142649	0.995258250959001
Merged-chr13-18717312-4	chr13	18717213	18717413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172120)	promoter-TSS (NM_172120)	21.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	7.6503933394198	7.42374703462637	7.06134741194482	7.37047363252476	7.5056484595287	7.69159614171928	7.42216401079793	7.43484889487529	0.164874421702764	0.401093745178015	0.698839078520995
Merged-chr17-24737671-4	chr17	24737570	24737770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013759, intron 1 of 4)	intron (NM_013759, intron 1 of 4)	1077.0	NM_001346668	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	6.97993915633301	7.18681831804928	6.48955471505011	6.74201199362096	6.76088687054895	6.49848960800378	6.47385883916368	6.69604854821782	-0.36352481593928	0.123523577295459	0.38979804523468
Merged-chr4-10874038-4	chr4	10873906	10874106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026005)	promoter-TSS (NM_026005)	-492.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	6.09975989781441	5.47775275328234	5.45391252537152	5.46226437749848	5.92631668964941	5.79849704530727	5.36541106659711	5.67095378304628	0.114025666310982	0.710365742642886	0.884071480587363
Merged-chr9-57874337-4	chr9	57874236	57874436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36650.0	NM_027086	69459.0	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	6.33346455207626	6.41222444115314	6.17600785886424	5.97071464612429	6.71609884610632	6.35396561764185	6.68281135913994	6.73946765117957	0.615961110021452	0.00829302223203848	0.0688383707818387
Merged-chr11-60913804-4	chr11	60913699	60913899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025294)	promoter-TSS (NM_025294)	-7.0	NM_025294	24083.0	Mm.22780	NM_025294	ENSMUSG00000018931	Natd1	AI256713|F3-2|Gm16515|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding	7.02664467988462	6.92683091370811	6.70618494428529	6.55016270607547	6.95339435475486	7.1433189398326	6.78816059544847	6.65475243741498	0.130845888168778	0.5601069246785	0.804203083823139
Merged-chr8-71752475-4	chr8	71752362	71752562	+	863.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26781.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	4.17516016163882	3.96458260593735	4.39188424676981	3.98034417081908	4.40749967645806	3.91967466430303	4.33131162959429	4.57309847516371	0.503313107699495	0.238561951053307	0.548947761743878
Merged-chr6-38352147-4	chr6	38352025	38352225	+	994.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 1 of 8)	intron (NM_028864, intron 1 of 8)	2478.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	5.38193817681242	5.86222225248791	4.93590464400364	5.29364145601422	5.65944630148683	5.55721830129624	5.13620867112888	5.08699862462173	-0.0382907505150518	0.913108890683142	0.967428663410909
Merged-chr17-29489722-4	chr17	29489624	29489824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1321.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	6.60571569869744	7.4028405005537	6.41625198358566	5.54168287781071	7.14443817026357	7.35541642225205	6.68023293218292	6.27370490200768	0.362410560813618	0.544382519305093	0.795184841840149
Merged-chr4-135898571-4	chr4	135898466	135898666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009924, intron 1 of 1)	MIRb|SINE|MIR	3377.0	NM_009924	12802.0	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	5.81626158666162	5.96979866938584	5.43772885887591	5.56284180964291	5.44128818455014	5.49156118679811	5.2216206910582	5.46308340922474	-0.514866975523647	0.0740614075537639	0.293227978020397
Merged-chr6-129369919-4	chr6	129369832	129370032	+	941.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	15571.0	NM_027709	71183.0	Mm.79402	NM_027709	ENSMUSG00000030158	Clec12b	4933425B16Rik	C-type lectin domain family 12, member B	protein-coding	5.09014134911865	4.83030546676078	4.82690014572727	4.94867301539312	4.76771526354295	4.88635826803143	4.72907623050447	4.62576765920629	-0.356531314183747	0.279631649701802	0.591673638350908
Merged-chr8-57541137-4	chr8	57541027	57541227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 6 of 11)	intron (NM_001167981, intron 6 of 11)	29284.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	6.89869425686894	7.00713841813568	6.59729531456814	6.910950094758	6.8753627586453	6.58228703595163	6.62689039374014	6.4731357580757	-0.296413902407175	0.173175753255008	0.467177447069859
Merged-chr6-47841036-4	chr6	47840929	47841129	+	852.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027477, intron 2 of 5)	intron (NM_027477, intron 2 of 5)	5368.0	NM_173034	272347.0	Mm.169059	NM_027477	ENSMUSG00000062519	Zfp398	5730513I23Rik	zinc finger protein 398	protein-coding	3.55147901666669	3.8927563184425	3.67148266370905	3.87566228001055	4.10073687694262	3.90047831983894	3.76603108318993	3.97347665559516	0.507768369818526	0.269533206269942	0.581238507864386
Merged-chr3-89905206-4	chr3	89905122	89905322	+	920.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	7974.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	4.65879128928342	5.13106537419801	5.10460335562976	4.79841377851388	4.88791979006885	4.962718066089	5.25301627200342	5.03692343185368	0.208079876217403	0.532192313872736	0.78793819596363
Merged-chr5-105568272-4	chr5	105568187	105568387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	48816.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	6.32115157445484	6.03924540544147	6.37474961745112	6.33234312549394	6.48457184938535	5.92374323459256	6.28989377648284	6.08287089555278	-0.0716963255232544	0.772845876733332	0.911052408089747
Merged-chr2-158310884-2	chr2	158310798	158310998	+	739.916626	f0_c57.idr|f1_c57bl6.idr	intron (NM_008489, intron 3 of 14)	intron (NM_008489, intron 3 of 14)	4405.0	NM_008489	16803.0	Mm.218846	NM_008489	ENSMUSG00000016024	Lbp	Bpifd2|Ly88	lipopolysaccharide binding protein	protein-coding	2.63514954702347	2.49539936910577	2.63539840863488	2.35967837246343	3.10651915963912	3.29143107123922	3.44969307148096	3.37416235335084	4.00580063045185	1.60512124052717e-08	8.19590565132591e-07
Merged-chr13-43765437-4	chr13	43765335	43765535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19677.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	8.5353649351467	8.4776435536536	8.41425821987706	8.29359079961089	8.30906516773338	8.40302270803815	8.35438435612729	8.20818327931899	-0.137569269214867	0.372652436613084	0.676386604956396
Merged-chr13-102860318-3	chr13	102860236	102860436	+	844.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	100081.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	3.45339324581606	3.80062140082063	3.78657872605168	4.13060984806817	3.41216155174938	3.69122628635507	3.7704946880541	3.57249613985894	-0.657668923295224	0.202315875352966	0.504746975435225
Merged-chr2-136936598-3	chr2	136936497	136936697	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	37246.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	6.10231545591899	5.71594222060784	5.95548178243334	5.99787800113859	6.05741031442324	6.17453541828061	6.1857262960035	5.78383586842566	0.170750008641544	0.495018881360467	0.765477926490478
Merged-chr3-65551349-4	chr3	65551251	65551451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178892, intron 4 of 5)	intron (NM_178892, intron 4 of 5)	-21937.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	5.13327603850493	5.19654899227797	5.40005796211274	5.72235751713666	4.96977714122193	4.70256476652857	5.00722132498944	5.19467204538249	-0.786418737628943	0.0191245691062728	0.124180597009249
Merged-chr1-191193807-4	chr1	191193661	191193861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10428.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	6.61606263664516	6.67979676853441	5.64698548138154	6.19886138289247	6.44732843395294	6.44724083485051	6.27600432740864	6.03843949152674	-0.0461015517525414	0.875191981870409	0.95304713758329
Merged-chr7-101871534-4	chr7	101871459	101871659	+	980.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008034)	promoter-TSS (NM_008034)	-771.0	NM_001252552	14275.0	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	5.28420939501547	4.62853197993156	5.19468478822289	5.28271635619131	5.26707235200121	5.39843850697689	4.93115031369957	5.28143082816466	0.186801007445034	0.579827227518357	0.815494836491523
Merged-chr1-39583389-4	chr1	39583298	39583498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb-int|LTR|ERVL-MaLR	-6051.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	6.30261736120406	6.7167021652973	6.47389633035045	6.82312763230235	6.75323135711378	6.63350906547438	6.91828506085975	6.80826435827773	0.241771101942795	0.281164705565024	0.593294870669182
Merged-chr19-5088423-4	chr19	5088316	5088516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026553)	promoter-TSS (NM_026553)	-122.0	NM_026553	68090.0	Mm.44202	NM_026553	ENSMUSG00000024875	Yif1a	5330422J23Rik|54TM|Yif1|Yif1p	Yip1 interacting factor homolog A (S. cerevisiae)	protein-coding	8.11158845192563	8.27511283860692	8.02222088241247	7.94606075745223	8.13998630742597	8.20650646301587	7.75666771662858	8.04344815630275	-0.0546421531396473	0.76046495282414	0.906130030835837
Merged-chr10-66998972-4	chr10	66998861	66999061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6114.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	7.52491533368645	7.36765114161483	7.27863556253429	7.45706197689062	7.7105329969328	7.47766753952806	7.40576696557047	7.41810695265377	0.138289254292273	0.447474165774502	0.732976564773399
Merged-chr1-106882923-4	chr1	106882838	106883038	+	814.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001360853, exon 8 of 8)	3' UTR (NM_001360853, exon 8 of 8)	21763.0	NM_009257	20724.0	Mm.268618	NM_009257	ENSMUSG00000067006	Serpinb5	1110036M19Rik|AI462524|AI646751|Maspin|PI-5|Spi7|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 5	protein-coding	4.03795074233669	3.83674938915951	3.98902715226829	4.52584817525104	3.97001452785232	3.94924216496756	4.31934674959142	3.98671720698992	-0.207992898954228	0.656581028561349	0.856717390180484
Merged-chr9-75558652-6	chr9	75558594	75558794	+	965.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	963.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	3.79324156425807	3.8789088775088	3.84778249151778	3.77033267467367	3.91529212256143	4.21308484771471	4.02594603764281	4.08595382461628	0.657752258886151	0.121294937098648	0.385671952458887
Merged-chr7-63940483-3	chr7	63940373	63940573	+	820.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1558.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	3.5354430050653	3.47093370240121	3.32068546088563	3.30132065495796	4.40554102352082	4.69581852058932	3.92104456335156	4.12194634218563	2.59675379165635	1.06620227147337e-07	4.54438392103014e-06
Merged-chr13-43750514-3	chr13	43750411	43750611	+	579.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	33720.0	NR_046022	622552.0	Mm.375036	NR_046022	ENSMUSG00000110016	Gm20751	-	predicted gene, 20751	ncRNA	3.4378772493653	3.25905083029982	3.0855743684307	3.0709440045348	3.41257146434656	3.26307105703587	3.56757621380658	3.21241202707348	0.57916007010856	0.288866426211613	0.600818869479177
Merged-chr16-15889061-3	chr16	15888978	15889178	+	867.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_146068)	TTS (NM_146068)	1792.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	3.57619904742334	3.12939773098688	3.57671827561804	3.26133989864754	3.76134975168125	3.64125434752564	3.34011874758993	3.5220996742385	0.625392794033772	0.239731009926929	0.550232605300816
Merged-chr6-87010075-5	chr6	87009936	87010136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020045, intron 1 of 7)	CpG	200.0	NM_020045	56748.0	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	5.44071577829459	6.05283626577911	6.61203449439307	5.67591727577832	5.18404502312785	5.35508659402646	5.14535744336943	5.609344059529	-1.14526133964175	0.0011317943739709	0.0148579844605081
Merged-chr3-95651435-4	chr3	95651340	95651540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7281.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	6.22032500953409	6.01511356367313	6.92257273017962	6.4794280014904	6.16288732747287	5.93459282476614	6.1499092739484	6.21696464610417	-0.498283044356161	0.0695093519452219	0.281979149783937
Merged-chr10-24131650-4	chr10	24131537	24131737	+	941.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17652.0	NM_001358563	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	5.36854760100319	5.11751076676454	4.79594410281837	5.46152710225714	4.91460108020961	4.84933955393301	4.95880136345148	4.5267483320032	-0.773177078142489	0.0282202657873053	0.160884988716642
Merged-chr18-78805216-4	chr18	78805105	78805305	+	863.729126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053099, intron 4 of 5)	T-rich|Low_complexity|Low_complexity	-208255.0	NM_207651	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	4.37208831203703	4.25771430445365	4.45233748673769	3.80919547193771	4.48306814437074	4.37114584402654	4.03094446084594	4.2406296179519	0.161946322744482	0.711562636044828	0.884470467851265
Merged-chr5-33938637-4	chr5	33938498	33938698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-2340.0	NM_011914	24116.0	Mm.332320	NM_011914	ENSMUSG00000029111	Nelfa	Whsc2|Whsc2h	negative elongation factor complex member A, Whsc2	protein-coding	6.36434129552814	6.03193244635188	5.94979666132124	6.050162665248	5.43501330846142	5.40070793840603	5.52143955205267	5.76114086848951	-0.934133265617815	0.000456681112690619	0.00717335152954978
Merged-chr2-34914255-4	chr2	34914165	34914365	+	933.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028716)	promoter-TSS (NM_028716)	-289.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	5.10411285451784	5.26083671983632	4.78892762741288	5.05430582857652	4.9418538204451	5.04007781642053	4.91530799766878	4.74586749994174	-0.297882106843424	0.358992751847904	0.664933906263029
Merged-chr13-51312162-4	chr13	51312064	51312264	+	919.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96454.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	4.79733554900483	4.4057857181728	5.03338371777092	5.05763559879874	4.72302124571247	4.38693367068207	5.00840418403427	4.86665304628684	-0.182710832643809	0.633527819265064	0.844691891869776
Merged-chr4-43041016-2	chr4	43040916	43041116	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253353)	promoter-TSS (NM_001253353)	-715.0	NM_001253354	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	3.07960690005218	2.98410163974155	3.46990443554476	2.89214774631983	3.32141713976082	3.2559719797712	3.30328429565649	3.2598296949436	0.651915246555425	0.257427065874787	0.569250985539994
Merged-chr15-83350203-4	chr15	83350104	83350304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025445)	promoter-TSS (NM_025445)	43.0	NM_001357756	66251.0	Mm.258910	NM_025445	ENSMUSG00000054277	Arfgap3	0610009H19Rik|1810004P07Rik|1810035F16Rik|9130416J18Rik|Arfgap1	ADP-ribosylation factor GTPase activating protein 3	protein-coding	6.89695545324246	6.95558160061355	6.55886667492353	6.57439105114368	6.9804125445441	6.84891758768244	6.81060816221835	6.63605963649946	0.111044089110033	0.609586281839098	0.831081414209299
Merged-chr19-29816362-4	chr19	29816248	29816448	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3374.0	NM_177721	240614.0	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	5.05040870977582	5.04442416128992	4.79788245821368	5.40386877834981	4.84305285608503	4.8933495865281	4.92506424869944	5.04781943706468	-0.36832195855506	0.273601815287486	0.585265322625033
Merged-chr13-20108107-4	chr13	20108000	20108200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	17593.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	7.05463323137225	7.41463443402265	6.78664500237244	7.21332702544083	7.22534082705076	7.1320598789309	6.90665808659318	6.76673997849327	-0.162867714583125	0.46716128569142	0.746801265647702
Merged-chr17-46144251-4	chr17	46144158	46144358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029338)	promoter-TSS (NM_029338)	-60.0	NM_029338	75564.0	Mm.17993	NM_029338	ENSMUSG00000023966	Rsph9	1700027N10Rik	radial spoke head 9 homolog (Chlamydomonas)	protein-coding	6.56233298163168	6.82899809377735	6.91085433707194	6.80177060311677	6.69249912167309	6.67183532056578	6.79807672068493	6.67021232062777	-0.10768268465268	0.594388522503835	0.823411261518897
Merged-chr9-120052444-3	chr9	120052350	120052550	+	731.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009987, intron 1 of 1)	intron (NM_009987, intron 1 of 1)	15846.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	3.4974039910595	3.60992201444671	3.79312550900137	3.29782462867994	2.69645896141712	2.85937597524303	2.74006045545914	2.7456044482313	-4.49155569091481	3.8101054742854e-06	0.000116695136641205
Merged-chr9-74953451-3	chr9	74953358	74953558	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113283, intron 1 of 12)	intron (NM_001113283, intron 1 of 12)	405.0	NM_001113283	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	5.33590402485995	4.95869423872634	4.9692683340101	5.08175316308142	4.9855927338352	4.91452401025473	5.07910288277352	5.00096848924256	-0.184753111553519	0.555022583834961	0.801191516655959
Merged-chr2-103945551-2	chr2	103945451	103945651	+	832.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12444.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	2.80940687773731	3.01726696545729	3.01389366404958	2.69788897088392	2.98603677711375	3.12685810214884	3.00282039130024	3.56731116569716	1.24098909377267	0.0444071916032703	0.21487827947853
Merged-chr4-85618959-3	chr4	85618895	85619095	+	822.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	413539.0	NM_019535	20404.0	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	3.38110571000812	3.56475787288775	3.38148979331696	3.21293542044549	4.4316739251274	4.39676351460337	4.08447974841058	4.10157408900684	2.61353553775174	2.26692867334337e-08	1.11976208216452e-06
Merged-chr15-9714834-4	chr15	9714726	9714926	+	762.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305042, intron 8 of 36)	intron (NM_001305042, intron 8 of 36)	34042.0	NM_177123	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	4.10653135206708	3.77049973947473	4.15002799927888	4.0363276652813	4.05312708336482	3.69282898892288	3.8524628635292	4.10459228322306	-0.216731500115264	0.628580421787347	0.841592736581755
Merged-chr10-60375745-3	chr10	60375667	60375867	+	775.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 37 of 68)	intron (NM_001252635, intron 37 of 68)	-23959.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	2.88602003744775	2.78590291982715	2.94317497067155	3.0294632791818	2.63472418945787	2.80391939523134	2.62320951550044	2.6292833573424	-1.21597876532415	0.0646529519871199	0.270299083876612
Merged-chr11-59184047-1	chr11	59183947	59184147	+	941.0	f1_c57bl6.idr	promoter-TSS (NM_080454)	promoter-TSS (NM_080454)	-834.0	NM_080454	118454.0	Mm.40016	NM_080454	ENSMUSG00000043448	Gjc2	B230382L12Rik|Cx47|Gja12	gap junction protein, gamma 2	protein-coding	3.35765478839071	3.44766215001712	3.18481042210835	3.04459973954133	3.11012033220973	3.47352510587213	2.97693984272126	3.40906833555398	-0.0294382457471876	0.959595702711564	0.985551429297447
Merged-chr15-64266812-4	chr15	64266698	64266898	+	963.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	45875.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	4.97725358351652	4.56233636711149	4.6504198881381	4.89783530106923	4.96952220044331	4.69748807389294	4.92154276952797	4.72778818105944	0.106622028756152	0.756550886786498	0.904382231132879
Merged-chr10-125390198-4	chr10	125390090	125390290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61227.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	6.99766476915855	6.83033681503788	6.93423089363341	7.3365082636619	6.88726353550856	7.00074198513185	7.22331328144087	7.07915813117616	-0.00706668361927891	0.97373481765413	0.990573976844078
Merged-chr5-143329203-4	chr5	143329121	143329321	+	988.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028379)	promoter-TSS (NM_028379)	17.0	NM_001359445	72881.0	Mm.261606	NM_028379	ENSMUSG00000001844	Zdhhc4	1810021D01Rik|2900029I10Rik|DHHC-4	zinc finger, DHHC domain containing 4	protein-coding	4.77617616189796	4.92590923809624	4.61575511455588	4.64158559446991	4.86352524356212	4.98687644430343	4.79143028395853	4.91680000071625	0.306583055807485	0.352424702773462	0.659568292805988
Merged-chr13-37619447-3	chr13	37619356	37619556	+	803.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-206582.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.70790625757654	3.64621121798133	3.93535753522952	3.39903582465138	3.33483768855329	3.41917546782177	3.42007156589851	3.84699996619934	-0.508446292211044	0.339740489002541	0.648878079497473
Merged-chr4-155150719-4	chr4	155150628	155150828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	64124.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	5.33006078824479	5.55677162738576	5.71229370093761	5.5899384529484	5.64494365174282	5.78359271198533	6.35067698744108	6.00104154983369	0.672003461165543	0.0194329857953458	0.125494286522781
Merged-chr5-67823848-4	chr5	67823711	67823911	+	984.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	23620.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	4.74556041660052	4.39317427982972	4.74633339088301	5.03232903595224	4.65193717983991	4.76068796812822	4.72397202154747	5.01500213004096	0.0520639232557962	0.887508244190644	0.957799052224803
Merged-chr3-106790118-4	chr3	106790007	106790207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007651)	promoter-TSS (NM_007651)	42.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	6.9537587216952	7.22552965444234	6.89975788435897	7.25833571471587	7.50553213910132	7.42009871993824	7.31954345360814	7.04117279736356	0.31446310797245	0.12738405588109	0.397138527158694
Merged-chr19-5117604-4	chr19	5117501	5117701	+	947.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045528, intron 1 of 15)	CpG	807.0	NR_045528	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	4.21830436241427	4.82827010479506	4.06427364666937	4.03375299411675	4.61682304718265	4.3469467506448	4.42139213150461	4.39754789530463	0.295736973010301	0.494903869407644	0.765380871135718
Merged-chr10-59225282-4	chr10	59225147	59225347	+	988.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172939, exon 1 of 1)	3' UTR (NM_172939, exon 1 of 1)	3325.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	4.96065079847525	4.76875983479596	4.92697841711321	4.43670952397733	4.93390802377098	5.06542729063734	5.26229600092825	4.77564861328649	0.502525521816772	0.153105473084123	0.437555330104179
Merged-chr8-117802057-4	chr8	117801934	117802134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026758)	promoter-TSS (NM_026758)	-60.0	NM_001357232	68533.0	Mm.181836	NM_026758	ENSMUSG00000031843	Mphosph6	1110001M01Rik|AA536809|C86426	M phase phosphoprotein 6	protein-coding	8.36590170695099	8.36705637036154	8.26651370322809	8.34344142506879	8.29218944671802	8.57690388829289	8.66876625625251	8.32359410591345	0.170698305790742	0.29632651622878	0.608406169916014
Merged-chr10-118981281-3	chr10	118981179	118981379	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-54136.0	NR_110482	216377.0	Mm.208936	NR_110482	ENSMUSG00000112854	Gm38403	C230029M16	predicted gene, 38403	ncRNA	5.74608966637152	5.74247363883872	5.47738804929813	5.44255205655577	5.81563708258522	5.82123621979482	5.69354866659739	5.94439641903146	0.369795352081058	0.157672523829416	0.444315791347796
Merged-chr5-147758273-4	chr5	147758162	147758362	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32274.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	5.15747524139753	5.3524472225283	4.97306306878257	4.97798397511445	5.66773725570292	5.61052630635231	5.46343841871689	5.66089060825374	0.870141460796223	0.00235893464999585	0.0265548963232729
Merged-chr1-84933673-4	chr1	84933580	84933780	+	831.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027921, intron 1 of 4)	intron (NM_027921, intron 1 of 4)	1403.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	3.81280062318274	4.09915028216426	3.58686876424025	3.7330269404582	3.83189866173625	4.13083780359746	3.63375799969653	4.28297804662815	0.481703828061206	0.32258578613707	0.634045774326241
Merged-chr1-80715706-3	chr1	80715588	80715788	+	896.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	42865.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	3.37664279821685	3.41584813186942	3.74180879123201	3.7173425361173	3.58742278344098	3.60734468142421	3.36515915570513	3.24936000002618	-0.378816767063861	0.472842137615259	0.75087411626434
Merged-chr15-98533966-4	chr15	98533863	98534063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153345, exon 1 of 11)	non-coding (NR_153345, exon 1 of 11)	306.0	NM_001359827	69612.0	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	7.00930766870128	7.18385002293227	6.79085674436616	6.98496525294911	7.19582381268592	7.04120553954854	7.44093278431138	6.96723402482443	0.24003952501281	0.245370423064804	0.55645105639258
Merged-chr17-71552011-4	chr17	71551894	71552094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142631)	promoter-TSS (NM_001142631)	-67.0	NM_001142631	70891.0	Mm.477599	NM_029254	ENSMUSG00000052525	Spdya	4921517J08Rik|4930548B21Rik|GS4|MLZ-465|Spdy1	speedy/RINGO cell cycle regulator family, member A	protein-coding	7.04302778177702	7.22361464203746	6.99301598718301	7.18412391217871	7.2821982160811	7.29433157069928	7.27779479869782	7.26803172627231	0.215220234103936	0.233238588230685	0.542869961976968
Merged-chr10-81412382-3	chr10	81412291	81412491	+	587.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152732)	TTS (NR_152732)	2816.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	2.8816941437292	3.15099201739374	3.12678047051556	2.8792544970894	3.01646527985232	3.05595875949108	3.05822822791481	3.00862180091327	0.102373091612808	0.86015141825019	0.947123023003096
Merged-chr15-79350119-2	chr15	79350019	79350219	+	777.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304832, intron 1 of 2)	intron (NM_001304832, intron 1 of 2)	1717.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	2.87995568769604	2.83715747053419	2.75040783351626	2.72085513375609	2.75689020358011	3.10911675717521	2.92945149553529	2.87886050339189	0.564476469772749	0.354070822418151	0.660831376621657
Merged-chr19-32180353-4	chr19	32180273	32180473	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	30640.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	5.56382733327427	5.25785895561314	5.27465515278181	5.25906027508074	5.07089745511221	4.99548979279257	4.9510080701743	5.21022902386377	-0.515330539106551	0.0889110356103554	0.325381910896163
Merged-chr17-26886234-4	chr17	26886124	26886324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-30867.0	NM_053173	16580.0	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	5.94600190615917	6.54837871954507	5.79952399645015	6.17921275810213	6.38978844661425	5.97785660885135	6.06874836339421	5.84646141892118	-0.0917076918413922	0.745427534019203	0.899514909367525
Merged-chr5-64376681-4	chr5	64376572	64376772	+	988.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	91270.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	5.48634230797986	5.23104864580213	4.97020861690713	5.08785199790735	5.65303610722515	5.22640498324152	5.58490278709039	5.56060387371674	0.577088883635846	0.0540310156057823	0.242661868635862
Merged-chr11-78177532-4	chr11	78177423	78177623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291235)	promoter-TSS (NM_001291235)	-626.0	NM_001291235	68385.0	Mm.390375	NM_026708	ENSMUSG00000019437	Tlcd1	-	TLC domain containing 1	protein-coding	5.44191844172553	5.13965269171906	5.0137006205703	5.05628469232947	5.29919456342911	5.29323246709202	5.22040599626216	5.14826077236733	0.148809081457499	0.620879342882672	0.837513287123841
Merged-chr12-85533810-4	chr12	85533697	85533897	+	969.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	59907.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	5.12435101130506	5.3828662705414	4.84633728160432	4.76035346106256	4.99263876266152	4.86039251943642	5.03627469708431	5.15256984492767	-0.0538244262856196	0.874469462697462	0.952906642457787
Merged-chr5-144100336-4	chr5	144100249	144100449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081109)	promoter-TSS (NM_001081109)	-87.0	NM_001081109	231876.0	Mm.288726	NM_001081109	ENSMUSG00000038970	Lmtk2	2900041G10Rik|A330101P12Rik|BREK|KPI-2|KPI2|aatyk2|cprk	lemur tyrosine kinase 2	protein-coding	5.77800642379087	5.48448423332099	5.15755327119718	5.71606424284245	5.86352431740755	5.88096429434993	5.74958357217171	5.75128533813169	0.407139268878573	0.144741279550167	0.423930146704668
Merged-chr1-152613836-4	chr1	152613710	152613910	+	986.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	11407.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.90269390324499	5.69398177096182	5.80008874304779	5.94129227482047	5.27146532755919	5.07790217410103	4.91212577059185	5.05320015436158	-1.3131008901574	6.49733501747726e-06	0.00018746404913215
Merged-chr4-33338191-3	chr4	33338095	33338295	+	789.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305273, intron 7 of 15)	intron (NM_001305273, intron 7 of 15)	27884.0	NM_001305273	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	3.95316805345247	4.40338258224773	4.13682966095083	3.85211398107511	3.75271904261306	4.02639566968559	3.60683473929202	3.84923494993418	-0.792622952650539	0.092758575010981	0.333238914384829
Merged-chr16-75869497-4	chr16	75869399	75869599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 7 of 7)	intron (NM_023380, intron 7 of 7)	39767.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	5.48952803987513	5.47991295462725	5.08699038336063	5.25147088030689	5.72895498513819	5.33540224221738	5.68017326404159	4.80043349858893	0.194635994270442	0.57032221329736	0.809955403437605
Merged-chr14-30870368-3	chr14	30870264	30870464	+	926.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028839, intron 4 of 7)	intron (NM_028839, intron 4 of 7)	-8893.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	4.44830196440692	3.93065905997455	4.72390758399527	5.06433058052398	3.63035071461531	3.74723233473038	4.02927153705662	3.81779304179064	-2.09182948035887	3.84962377024152e-05	0.000901653077795396
Merged-chr6-116726302-3	chr6	116726231	116726431	+	755.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57E1|LTR|ERV1	-9573.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	3.6673294454897	3.6078423768394	3.61797615007849	3.44426168292703	3.86076947998193	3.31356412272718	3.4983143631444	3.26834770921015	-0.195318657404628	0.71645958651907	0.8866074790069
Merged-chr11-84597775-4	chr11	84597671	84597871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72111.0	NR_038057	78365.0	Mm.260345	NR_038057	ENSMUSG00000087211	Lhx1os	1500016L03Rik|Lhx1as	LIM homeobox 1, opposite strand	ncRNA	7.20289405826321	6.85854968555459	7.14870309677889	7.38013780049225	6.89756548358682	6.83390887864225	7.22092808211176	7.26249711609392	-0.142481319214238	0.513003769684967	0.776079955542303
Merged-chr11-11540739-3	chr11	11540646	11540846	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51480.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	3.45533389342414	3.56659758379108	3.91522464225761	3.20966713099915	4.44786760004051	3.88415224833251	4.07665921942071	3.96039768353849	1.64294478769077	0.00116518585363112	0.0152149631032122
Merged-chr4-32239999-4	chr4	32239912	32240112	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-177423.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	4.50368258688436	4.58247521486523	5.25348739800401	4.98006301677815	4.53204182191941	4.58993700672031	4.90964225859162	4.86241146887154	-0.286150943382658	0.453712436253882	0.737638651163466
Merged-chr7-110379536-4	chr7	110379437	110379637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	157834.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	6.77147211627697	6.49159636851301	6.37839807060198	6.51903344942776	6.69115992438881	6.47955269788057	6.4174320460213	6.66941200430003	0.0441879488091883	0.839477424140614	0.938941281871456
Merged-chr15-93399817-4	chr15	93399712	93399912	+	824.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358749, intron 2 of 8)	T-rich|Low_complexity|Low_complexity	1348.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	3.8355042407184	3.64415709482333	3.67408383954278	3.81235437954401	4.21952786073989	3.90419148425142	3.66029432193773	4.02192800949589	0.643536948021678	0.162783807616254	0.452255606647826
Merged-chr2-181497710-4	chr2	181497563	181497763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111899, intron 1 of 5)	intron (NR_111899, intron 1 of 5)	521.0	NM_001291204	66314.0	Mm.136648	NM_025482	ENSMUSG00000000827	Tpd52l2	2810411G23Rik|AU016537|C86069|D54	tumor protein D52-like 2	protein-coding	5.37711792497316	5.52988196867899	5.76595665330675	5.31998400725198	5.14268640177787	4.81673132501913	5.40624157136155	4.97776964207122	-0.71272118636738	0.0262084458622378	0.153378400577469
Merged-chr6-52842763-4	chr6	52842661	52842861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 2 of 4)	MTC|LTR|ERVL-MaLR	66859.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	6.76313240982788	6.68337879488412	6.61114611607409	7.26098143384155	6.52335490176591	6.92639686533741	6.89132037909945	6.66991347640719	-0.167076825612865	0.494110567374339	0.764837684306239
Merged-chr4-123083026-3	chr4	123082916	123083116	+	790.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22145.0	NM_007559	12164.0	Mm.439764	NM_007559	ENSMUSG00000002384	Bmp8b	Op3	bone morphogenetic protein 8b	protein-coding	3.60412553813627	4.13462674375708	3.3489552166811	3.66273782332206	3.631126134197	4.08298311161044	3.7530324877398	3.76659784762038	0.272844676049081	0.600205063339809	0.826747091301587
Merged-chr1-36262302-4	chr1	36262213	36262413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	11112.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	7.69286378420341	7.57052999985684	7.44899922341628	7.90317671482474	7.24443271156187	7.25895838688915	7.57464652363682	7.44384709381394	-0.385036478442787	0.0484432745174362	0.227194185189591
Merged-chr19-16009852-4	chr19	16009750	16009950	+	741.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045355, intron 2 of 2)	intron (NR_045355, intron 2 of 2)	24775.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	4.17102355999785	4.25572599524824	4.12591724865799	4.01918943605014	4.19674219596685	4.20230461080536	4.06130722433237	4.07610109325342	0.00116403471452883	0.99769475634611	0.999032258328017
Merged-chr7-141456072-4	chr7	141455970	141456170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025802, intron 1 of 7)	intron (NM_025802, intron 1 of 7)	882.0	NM_001163689	66853.0	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	6.27159083268613	6.09663417274383	6.51632687490821	6.31563510553636	6.08348519876701	6.60988709329528	6.48297043850626	6.44679470723595	0.153150379025948	0.525499147755315	0.783274779873425
Merged-chr1-54903090-4	chr1	54902973	54903173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	RMER19B|LTR|ERVK	23314.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	5.89908358195105	5.38644513187008	5.83727964932735	5.94927132024301	5.30690076151359	5.24315429443618	5.25227123370441	5.48923929566653	-0.801616160884759	0.00587435151317709	0.0534460806633081
Merged-chr1-40266067-1	chr1	40265967	40266167	+	745.0	f0_balb.idr	promoter-TSS (NM_001123382)	promoter-TSS (NM_001123382)	-519.0	NM_001123382	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	3.17508091820966	2.90487133329683	2.9498614075124	3.21792879439039	2.74528192993718	2.70469701675406	2.59417557959555	3.27267691084305	-0.916879018389104	0.195407402081523	0.496214149431049
Merged-chr11-107342595-4	chr11	107342516	107342716	+	967.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	MTC|LTR|ERVL-MaLR	128104.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	5.30249058454428	4.77326163048484	5.73836745965833	5.39776126084636	4.99582409955282	5.17453049840611	5.66508341228692	5.52299088495355	0.0310092189564521	0.931245966415257	0.97526935002018
Merged-chr4-40364452-4	chr4	40364363	40364563	+	918.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51231.0	NR_040663	75819.0	Mm.399244	NR_040663	ENSMUSG00000087137	4930509K18Rik	-	RIKEN cDNA 4930509K18 gene	ncRNA	4.91237691278609	5.07881710208067	5.15475623458705	4.68316018634558	4.87716984225999	4.70562712161769	4.20899679110071	4.27866707827421	-0.842960093090531	0.0359900693853648	0.188460027130205
Merged-chr1-144249153-4	chr1	144249070	144249270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015811)	promoter-TSS (NM_015811)	-66.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	8.1640462709419	7.97955013804015	8.08561221321491	8.14377126573138	7.89189618352068	7.90576152634257	7.99542578893486	8.0415866265721	-0.177872898298955	0.259115321073083	0.570955311849084
Merged-chr7-25269871-4	chr7	25269761	25269961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 1 of 20)	intron (NM_001302811, intron 1 of 20)	2162.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	6.31503448223456	6.52416215925991	6.2424616510918	6.57022856707647	5.97717917283236	5.85987680837261	6.21046867866525	6.01002089230623	-0.628099112257975	0.00801330220065265	0.0672775226869845
Merged-chr17-34850889-2	chr17	34850789	34850989	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021337)	promoter-TSS (NM_021337)	498.0	NM_001045864	27632.0	Mm.653	NM_138580	ENSMUSG00000024369	Nelfe	D17H6S45|NELF-E|RD|Rdbp	negative elongation factor complex member E, Rdbp	protein-coding	3.17744558972055	3.1759770258014	3.04834238110668	3.04638657483067	3.17182305051628	3.51990310025409	3.33724067342941	3.45262499663575	0.972495838083509	0.0708689996017947	0.28546118061548
Merged-chr7-55853011-4	chr7	55852916	55853116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 1 of 30)	intron (NM_011370, intron 1 of 30)	10945.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	7.51832229864986	7.54674265325801	7.59043932355386	7.42074196472378	7.3963156513255	7.67835653848026	7.67564294431767	7.1707746584469	-0.0295956012004094	0.877677922537259	0.954269407909636
Merged-chr18-34866114-2	chr18	34866014	34866214	+	955.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4907.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	3.53683888612912	3.70033803811921	3.16144230813969	2.98409344548338	3.70880615327924	3.90773725284499	3.46763276267858	3.47959069443257	0.902108103808852	0.115648944963577	0.376329506906353
Merged-chr9-62040385-3	chr9	62040300	62040500	+	685.416687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13610.0	NM_028748	74090.0	Mm.273267	NM_028748	ENSMUSG00000032278	Paqr5	0610010I15Rik|AV002411|BB115488|mPRg	progestin and adipoQ receptor family member V	protein-coding	3.14598765936187	3.26880054791193	3.21157955624712	3.2879439847034	3.76800108473382	3.44669987539094	3.32079267549842	3.49457856409317	1.00511512574685	0.0570076231990844	0.250213247534362
Merged-chr3-145750533-4	chr3	145750430	145750630	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-8162.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	5.04308759331722	5.08917802462945	4.7714555528716	4.6699825212455	4.82422583332548	4.90717647859643	4.71071427392801	4.4225046991781	-0.339499332590818	0.343423832351603	0.65211591204361
Merged-chr1-63115937-2	chr1	63115837	63116037	+	692.599976	f1_balb.idr|f1_c57bl6.idr	intron (NR_045914, intron 1 of 3)	(TTTC)n|Simple_repeat|Simple_repeat	1197.0	NR_045914	100380944.0	Mm.392955	NR_045914	ENSMUSG00000084799	Ino80dos	Gm11602	INO80 complex subunit D, opposite strand	ncRNA	3.70502500031766	3.16558910095689	3.33936362039335	3.24328136045295	2.90169198565993	3.45727269573002	3.26549954266713	3.94910418875186	0.245705271300159	0.699145964529449	0.878641735393934
Merged-chr14-33057739-4	chr14	33057654	33057854	+	960.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 36 of 58)	intron (NM_001146022, intron 36 of 58)	66372.0	NM_026253	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	4.90360340348254	4.95899230696068	5.50787345105969	5.30938338371549	4.77686493806042	4.55341137133508	5.051624197508	4.82530231383667	-0.750648272426282	0.0325558945555227	0.1767174573757
Merged-chr16-90810506-4	chr16	90810395	90810595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029497)	promoter-TSS (NM_029497)	-82.0	NM_029497	207932.0	Mm.328688	NM_029497	ENSMUSG00000039929	Urb1	4921511H13Rik|5730405K23Rik|AA670781|AI645590|mKIAA0539	URB1 ribosome biogenesis 1 homolog (S. cerevisiae)	protein-coding	8.06235677365652	8.29172013486872	7.69451155872057	7.53693466435217	8.22968947792873	8.04813806408269	7.88352942233032	7.91633962807588	0.133394896597941	0.5363801195121	0.790390040716126
Merged-chr16-55832243-4	chr16	55832151	55832351	+	935.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030612, intron 2 of 13)	intron (NM_030612, intron 2 of 13)	6390.0	NM_030612	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	4.60066678435115	4.29615363512024	4.19006145954115	4.16324043513953	4.65495177793073	3.92126994295498	4.26465581162586	4.44962386361238	0.106467765612281	0.804606085455419	0.924890290310896
Merged-chr9-42128190-4	chr9	42128076	42128276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3879.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	5.79423643394699	5.90067603293735	5.96627626546534	5.89363892888019	6.43082820326639	6.31256029543826	6.59264630215563	5.79114166857795	0.661035956937275	0.0117814884965046	0.0887245370696253
Merged-chr4-32358783-4	chr4	32358654	32358854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58681.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	6.86434513989549	7.2363101073531	7.43238338634476	7.63964197602994	6.75664757176846	6.4923347463106	6.92497012430402	6.94223495209701	-0.747809325745381	0.00160847391641214	0.0197497341647941
Merged-chr1-60974149-4	chr1	60974051	60974251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3763.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	5.12090627245381	5.03264795644326	5.71483845089287	5.40868615019898	4.86421742941453	5.08523258970533	4.8837658803682	5.01546046130495	-0.731723830223374	0.0269784823193834	0.156223673365717
Merged-chr19-54115002-3	chr19	54114881	54115081	+	801.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69799.0	NM_007417	11551.0	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding	2.6961644408492	2.73182839329048	2.69644530947124	2.77935968813671	2.67026447896097	2.86793060293647	2.9289770634992	2.93908109660016	0.563834238356564	0.365768401351697	0.670417458102074
Merged-chr9-4319525-4	chr9	4319414	4319614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164574, intron 2 of 2)	B1F|SINE|Alu	9698.0	NM_026962	69149.0	Mm.25946	NM_026962	ENSMUSG00000025893	Kbtbd3	2200003A07Rik|Bklhd3	kelch repeat and BTB (POZ) domain containing 3	protein-coding	6.19662745751105	6.86921075022912	6.91707892513583	6.93624377493921	6.5461017618304	6.71971483937647	6.9065270753379	6.33857121325622	-0.184047642367575	0.47102337450913	0.749675166007454
Merged-chr11-69110945-4	chr11	69110929	69111129	+	881.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9424.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	3.64307622563327	3.80171910313216	3.97592726887474	3.21390981531732	3.67821870811359	3.91885414028111	3.32999830569713	3.58628448954507	-0.120041422517115	0.827811838101189	0.933904217967199
Merged-chr2-155762056-4	chr2	155761943	155762143	+	959.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10826.0	NM_011171	19124.0	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	3.70944036674986	4.42670815874737	3.99100495801658	3.11955231169771	4.57084111598775	4.35362640808387	4.16007782149676	3.70793864540355	0.807915150785269	0.168356773978494	0.460424436739356
Merged-chr15-58585667-4	chr15	58585544	58585744	+	904.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	170176.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	4.52426895011137	4.22243490333371	3.84326396784279	4.15063809490741	4.00878415534368	4.18781672798537	4.27432280018866	4.33273649444672	-0.006101246323355	0.988622802118444	0.995489024715882
Merged-chr2-30266490-4	chr2	30266393	30266593	+	831.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281829)	promoter-TSS (NM_001281829)	-228.0	NM_001281829	227696.0	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	3.66318103693132	4.44746134696444	3.90294914638386	4.02528616722034	4.28425022629351	4.0799712162896	4.17770057337064	4.278434789006	0.415480952579149	0.359290870590667	0.665255617589146
Merged-chr15-102460243-3	chr15	102460171	102460371	+	732.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025385, intron 3 of 4)	intron (NM_025385, intron 3 of 4)	1101.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	3.35563968769048	3.8107280298197	3.85300224852214	3.44117634992406	3.6049664919312	3.87819160972308	3.52991189244656	3.80396553113644	0.250470470186695	0.619783501501633	0.836821765874744
Merged-chr6-48772223-3	chr6	48772133	48772333	+	717.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1382.0	NM_031247	83408.0	Mm.333050	NM_031247	ENSMUSG00000039264	Gimap3	2010110D23Rik|Gimap5|Ian4	GTPase, IMAP family member 3	protein-coding	3.55560526101214	3.06237428110031	3.15342845014493	3.31849510057141	3.44794178905199	3.45563881876655	3.43921448803119	3.60236079625365	0.693194962459266	0.194196461596535	0.49462163455756
Merged-chr7-126693433-4	chr7	126693337	126693537	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029420, intron 1 of 5)	B3|SINE|B2	2346.0	NM_029420	75764.0	Mm.280573	NM_029420	ENSMUSG00000059772	Slx1b	1110030E23Rik|2410170E21Rik|4833422P03Rik|AI853643|Giyd1|Giyd2	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	protein-coding	4.20573736441036	4.3109959606371	3.60713854206582	4.01922067989254	4.3703531476917	4.03582139665849	4.22997715653705	4.20374688711168	0.40077656283756	0.371101440712158	0.675168812423656
Merged-chr18-37998689-4	chr18	37998607	37998807	+	928.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001205336, exon 1 of 33)	5' UTR (NM_001205336, exon 1 of 33)	262.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	5.11948862986189	4.88425720905559	5.4909130334522	5.23437263468453	4.35393450925161	4.98469079709062	4.78471865603631	4.72324961357239	-0.962174057401248	0.00771213742397796	0.0654359553822061
Merged-chr13-58158311-4	chr13	58158226	58158426	+	898.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198004, intron 1 of 4)	(TG)n|Simple_repeat|Simple_repeat	677.0	NM_198004	75731.0	Mm.293919	NM_198004	ENSMUSG00000050002	Idnk	5133401N09Rik	idnK gluconokinase homolog (E. coli)	protein-coding	4.23395067619965	4.06270913443366	4.4107324412504	3.84111716655253	4.71878771483528	4.40990483700976	4.30604302194035	4.52548982583333	0.892712972628902	0.0294876312709802	0.165362675037066
Merged-chr15-50157179-3	chr15	50157065	50157265	+	995.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	731884.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	3.70672310739125	3.28885165253074	3.48373536956611	2.88775112734602	5.10615163182759	4.89373052541432	5.35449156032881	4.45096159677202	4.73475180531809	3.99030796823258e-19	1.20862183349288e-16
Merged-chr11-60835342-4	chr11	60835234	60835434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172112, intron 1 of 6)	ORR1C1|LTR|ERVL-MaLR	4703.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	5.94624507775271	5.83778871063836	5.59954621927707	5.65680353913822	5.87097971274021	6.07757803500329	5.8504305112694	6.06689470633371	0.332265189067748	0.18749901726188	0.485891890256793
Merged-chr4-139236241-4	chr4	139236110	139236310	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	42099.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	4.60987726175413	4.65516462745147	4.70380635255148	4.77523365185285	5.06838544035532	5.39454424586657	5.8734683829524	5.55934887440053	1.50748703920652	1.1007626949857e-05	0.000300196122093437
Merged-chr3-101604112-4	chr3	101604020	101604220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	CpG	587.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	7.3501260859145	7.27989886388706	7.50158827643201	7.69385745172407	7.70553901480808	7.60131417499189	7.92368807524448	7.83333771502481	0.386956221647747	0.0410552211170456	0.204942112622918
Merged-chr6-135192089-4	chr6	135191967	135192167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040296, exon 4 of 5)	non-coding (NR_040296, exon 4 of 5)	3587.0	NR_040296	100502888.0	Mm.437844	NR_040296	ENSMUSG00000108239	Gm19434	-	predicted gene, 19434	ncRNA	5.25375335103588	5.52689607121416	5.49208438942981	5.496409129851	5.07419803309572	5.18446586866761	5.66275792196646	5.66448858805574	-0.0587923276796441	0.848958410859532	0.942964760179308
Merged-chr7-102771170-4	chr7	102771054	102771254	+	863.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3372.0	NM_147092	259096.0	Mm.377839	NM_147092	ENSMUSG00000073966	Olfr561	MOR14-2	olfactory receptor 561	protein-coding	4.29398599636909	4.07887236651832	4.53911917252318	4.70833101677524	4.19126388337993	4.17285075961472	4.31935943658152	4.37870449108145	-0.419066193633841	0.310491820047036	0.622616866559057
Merged-chr1-91187544-4	chr1	91187427	91187627	+	974.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168392, intron 1 of 3)	intron (NM_001168392, intron 1 of 3)	7705.0	NM_001168392	51801.0	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	5.49475024752232	5.07503653130992	5.94842559878066	6.02655316202081	4.9981036422116	5.14637216008846	5.46784306159656	5.25287705758732	-0.83423576863866	0.0159300934958519	0.109353662353288
Merged-chr5-41842832-4	chr5	41842673	41842873	+	901.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081422, intron 1 of 26)	intron (NM_001081422, intron 1 of 26)	1542.0	NM_001310601	665775.0	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	3.37858254830636	3.46358683396698	3.25229104883789	3.48583375766777	3.6410534834518	3.49289246610657	3.58582967742961	3.7870910621254	0.733100499234975	0.141028695415296	0.417785760605188
Merged-chr4-154160789-4	chr4	154160695	154160895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026388)	promoter-TSS (NM_026388)	-111.0	NM_026388	67808.0	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	8.41736809008652	8.51121343458803	8.25818879748871	8.44355750716495	8.56818364551476	8.41736558232709	8.69037537688643	8.43391434138337	0.152515042146716	0.331373243917493	0.642517464690907
Merged-chr4-145017928-3	chr4	145017819	145018019	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 66 of 69)	intron (NM_001276465, intron 66 of 69)	124782.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	4.30917601259603	4.04146940336989	4.65188743946378	5.24571673552559	3.83054160145665	3.62489616658429	4.10465561994621	3.90325175032977	-1.94931663026973	0.000184414759701458	0.00339887575887884
Merged-chr19-40728919-4	chr19	40728811	40729011	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 7 of 9)	intron (NM_001304721, intron 7 of 9)	69141.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	4.88342398017936	5.04797089750451	5.40370821766487	5.66475404643254	4.87865722979963	5.31228574826238	5.23671662255245	4.95855844106148	-0.374256787489257	0.287885511278869	0.599882982737158
Merged-chr2-144264943-4	chr2	144264828	144265028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024225, intron 1 of 12)	intron (NM_024225, intron 1 of 12)	1274.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	6.3840095647664	6.13014843018917	6.00851084434526	6.64604179464979	6.1991714192819	6.01534062970855	6.30022738082314	6.39757000388309	-0.148419101949071	0.566009373574316	0.807783748011785
Merged-chr5-106696078-4	chr5	106695960	106696160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026856, intron 1 of 6)	CpG	770.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	5.31737792121147	5.37228055368863	5.31828594921866	5.26414976413468	5.37645400272489	5.36690765857872	5.32163941298632	5.48370919147704	0.132476699741977	0.631652309476309	0.843531757419958
Merged-chr8-105996500-4	chr8	105996381	105996581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176913)	promoter-TSS (NM_176913)	-58.0	NM_176913	319446.0	Mm.248357	NM_176913	ENSMUSG00000053687	Dpep2	F630103D06Rik|MBD-2	dipeptidase 2	protein-coding	6.27906973249111	5.94889422511626	5.81886386165719	5.85477284514923	5.63096602318982	5.53926032375081	6.08791489449569	5.93035681170111	-0.26994319149735	0.327544015050346	0.639011622936083
Merged-chr11-3191777-16	chr11	3191652	3191852	+	969.3797609999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 1 of 32)	RCHARR1|DNA|hAT-Charlie	1711.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	4.61083732420998	4.51339146736439	4.96136830140925	3.89163206474848	4.48044736706419	4.42730922235998	4.54911374333723	5.25480637290494	0.380073938304935	0.411474998546543	0.706942536257065
Merged-chr12-17717383-2	chr12	17717246	17717446	+	638.75	f0_c57.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	26537.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	2.7297406824401	2.52780408985919	2.73005902489604	2.65310964888583	2.71188900572862	2.83708924790341	2.84284392444939	2.96503571804816	0.844774595127839	0.179599498524513	0.475824186021704
Merged-chr3-157535108-4	chr3	157534990	157535190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152231)	promoter-TSS (NR_152231)	925.0	NM_001355386	53861.0	Mm.259036	NM_017381	ENSMUSG00000028180	Zranb2	AI227013|Zfp265|Zis|Znf265	zinc finger, RAN-binding domain containing 2	protein-coding	5.06875633292796	4.84226451959623	5.37600927607822	5.07117190197367	5.12459292439853	5.0625063158312	5.57068350737133	5.25853768682355	0.314662778242399	0.327738057778723	0.639159620583501
Merged-chr14-62231233-4	chr14	62231134	62231334	+	911.645874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61745.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	4.89175047680499	4.64244712726738	5.09103358929453	5.12327244722359	4.69494076952129	4.95557625086409	5.18156939554616	4.56577656826241	-0.182843982671336	0.61112510250494	0.832196031632187
Merged-chr6-48645822-2	chr6	48645734	48645934	+	606.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-1400.0	NM_001077410	243374.0	Mm.86514	NM_212486	ENSMUSG00000064262	Gimap8	Gm457|IAN9|IMAP8	GTPase, IMAP family member 8	protein-coding	3.49395812320181	3.26720254740172	3.49442885925082	3.42310954325061	3.56369931903391	3.7696983911283	3.42470278976718	3.64922048116606	0.603592135671498	0.221903637036961	0.530011710367231
Merged-chr12-112675459-4	chr12	112675363	112675563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331107)	promoter-TSS (NM_001331107)	-579.0	NM_001331107	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	5.67583690600016	6.00458095594495	5.24357163218834	5.93677305365253	5.73159439404983	5.97653177382313	5.84142993435768	5.86720890328333	0.143597307906564	0.617325307249839	0.835468348897191
Merged-chr7-80454975-4	chr7	80454850	80455050	+	963.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007550)	TTS (NM_007550)	-49514.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	4.49256166166233	5.06415063266036	4.75320010661573	4.50523369471377	5.13698862971478	5.20509052301249	4.87772385459086	4.71022141938394	0.567831116472285	0.116786696719893	0.378144943175419
Merged-chr4-152297215-4	chr4	152297114	152297314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037908)	promoter-TSS (NR_037908)	0.0	NR_037908	57295.0	Mm.277464	NM_133788	ENSMUSG00000039662	Icmt	1700008E11Rik|C80758|Gm13095|HSTE14|PPMT|STE14|pcCMT	isoprenylcysteine carboxyl methyltransferase	protein-coding	8.98664196417501	8.9883482890408	8.70417221769392	8.69337725588137	8.78226799326163	8.85532579706521	8.84308542651923	8.77893519296751	-0.0418197650459026	0.78613589835603	0.916793615374021
Merged-chr11-83705436-4	chr11	83705337	83705537	+	956.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081957, intron 2 of 2)	intron (NM_001081957, intron 2 of 2)	1381.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	5.54050686952859	5.20783145508243	4.38161688132395	4.15507526868788	5.16081540888749	5.50050797102521	4.60248982984076	4.21040909870094	-0.00935720750543499	0.990926234411112	0.996512269555645
Merged-chr10-57791543-4	chr10	57791426	57791626	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3018.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	5.41317896799864	5.26194302416354	5.73045441178004	5.4200798919574	5.16680975091204	5.27861309915521	5.14524932597051	5.0622462690596	-0.53972937265649	0.0691593649719651	0.281184351364569
Merged-chr5-146770361-4	chr5	146770272	146770472	+	859.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	24584.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	4.33131669419292	3.97186222321644	5.14165033493264	4.84663057634536	4.28743740243966	4.46284763826544	4.44568695124918	4.32929513962721	-0.603891947157692	0.186250181310146	0.484125681380109
Merged-chr1-64928104-4	chr1	64928011	64928211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	LTR79|LTR|ERVL	28713.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	6.53072696410041	6.63973561528423	6.77485263231637	6.8347554437386	6.60964839943518	6.67466860001752	6.49854958863215	6.59247057863002	-0.165667267127199	0.424762524020545	0.716449566285743
Merged-chr17-50510656-6	chr17	50510636	50510836	+	978.8412480000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	1189.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	4.45362392032716	5.09851294610165	4.40945711782619	3.97210681838675	4.59750665980971	4.93730514730479	4.24653525265543	4.53672332006278	0.112972035177069	0.80561504735876	0.92521045259115
Merged-chr15-58682213-3	chr15	58682115	58682315	+	796.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141212.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	4.12449226643343	3.65753680958203	3.79901451706802	4.1421388451964	3.76421880512143	4.16410443379976	3.55542626681737	3.74280497132979	-0.370231657341571	0.451116269231072	0.735774833837515
Merged-chr16-96292063-1	chr16	96291963	96292163	+	754.0	f0_balb.idr	intron (NM_033149, intron 1 of 2)	intron (NM_033149, intron 1 of 2)	11031.0	NM_033149	93961.0	Mm.154783	NM_033149	ENSMUSG00000074892	B3galt5	1190002B21Rik|AU045265|b3Galt-V	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5	protein-coding	2.97013646732231	2.80870990123713	3.22700929557693	3.15090503976102	2.47747820196577	2.51806116763659	2.56909122395154	2.84999486853738	-2.31208335864422	0.00237671234451657	0.0266874913977512
Merged-chr13-9873625-4	chr13	9873530	9873730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108309.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	8.23649815105594	8.3648668831637	8.66674841241027	8.70795609478169	8.52791190838843	8.51504546901781	8.83703986602374	8.48520010228791	0.106640089019177	0.557256570594366	0.8024959119173
Merged-chr13-44484512-4	chr13	44484417	44484617	+	939.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44790.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	4.092593230387	4.43047845250787	4.14438957186433	4.17555734844878	4.38606997908491	4.32032160216756	4.58177141480079	4.4525894901478	0.525089796252575	0.171810438231702	0.4650957452081
Merged-chr4_GL456216_random-13910-1	chr4_GL456216_random	13810	14010	+	1000.0	f0_c57.idr	Intergenic	RLTR9E|LTR|ERVK	-1971.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	3.75820482790002	3.60144697236677	3.75877350313134	2.43470044915825	6.45395753209141	6.08096347325541	6.51738790724874	5.91380302095852	9.95427397875158	5.291603488156e-27	4.43118876098183e-24
Merged-chr17-69143227-4	chr17	69143137	69143337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	-13507.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	6.67698213793232	6.31506205396325	7.37801129892292	7.37747229449295	6.85936195296015	6.51457354837483	6.93861242281857	7.19772332957777	-0.16855758819062	0.567082209030844	0.808122532096819
Merged-chr7-19269796-5	chr7	19269584	19269784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009499, intron 1 of 12)	intron (NM_009499, intron 1 of 12)	2170.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	5.35936826821197	6.28860647539066	5.98721684369437	5.10361806570052	6.10203158870505	6.54745096679762	5.86748466497229	6.00425802764494	0.607186335664044	0.0853363304251864	0.318041894659862
Merged-chr19-37137357-4	chr19	37137277	37137477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290829, intron 3 of 9)	intron (NM_001290829, intron 3 of 9)	-36466.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	6.15104437442741	6.47653174943046	5.98375899646337	6.74722688584944	5.76856581313715	5.50878393816067	5.81121573259672	6.1278679200086	-0.8804052112769	0.00235435071688121	0.0265200711626662
Merged-chr9-110449060-4	chr9	110448947	110449147	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360306, intron 3 of 9)	intron (NM_001360306, intron 3 of 9)	27647.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	5.08126537710317	4.81972314782973	4.32137023502726	4.54268683826528	4.81317900858493	4.85494453634983	4.53690355381975	4.71689160204078	0.0481274103356541	0.898572117799107	0.962247369777283
Merged-chr8-108742880-3	chr8	108742772	108742972	+	754.716675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	28228.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	3.94264819697095	3.82550115231001	3.79167869331205	4.12146729600794	3.53734819982059	3.54232669799184	3.66588240268079	4.44360215782162	-0.199114352890859	0.709235401963395	0.883398079941772
Merged-chr11-114980353-2	chr11	114980254	114980454	+	570.0	f0_balb.idr|f1_balb.idr	Intergenic	RLTR44C|LTR|ERVK	9532.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	3.37630387671298	3.20628630028462	2.88599490069048	2.58016950561548	2.41791246928836	2.40874264562229	2.38149619860969	2.38596687291698	-4.1882059983596	9.78624864659156e-05	0.00199420381453118
Merged-chr14-25467846-4	chr14	25467727	25467927	+	871.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	8642.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	4.83401599167711	4.59209767622822	4.42122646922179	4.63495263994796	4.32150356828787	3.98539845690374	4.22512498373358	4.19226186666777	-1.0464079066223	0.00861783495178219	0.0708778973349093
Merged-chr2-34772550-4	chr2	34772429	34772629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163434, intron 2 of 8)	CpG	439.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	7.70301835949713	8.3235016050743	7.4786582952898	6.73454901934937	8.16724512075983	8.38559957221477	7.56361197423051	7.68242311699223	0.39773922374796	0.403322114775311	0.700700507615324
Merged-chr5-112907569-1	chr5	112907469	112907669	+	572.0	f0_balb.idr	Intergenic	Intergenic	-11207.0	NM_028901	74376.0	Mm.441903	NM_028901	ENSMUSG00000072720	Myo18b	4932408L24Rik|4933411E19Rik|Gm448	myosin XVIIIb	protein-coding	3.30809302711661	2.99058599498567	2.9864990987125	2.99794047215087	2.96179912701357	2.7441406881207	3.09097733034904	2.85697687810237	-0.646176105599198	0.296527489911399	0.608507761092495
Merged-chr11-75255533-4	chr11	75255435	75255635	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177708, intron 1 of 1)	intron (NM_177708, intron 1 of 1)	61542.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	5.43234799926705	5.7067803292234	4.93934891175563	4.71670183893273	5.56336174417011	5.26883103681966	5.60576671870985	5.0870951308393	0.267947337645518	0.468553816445703	0.747803507343786
Merged-chr15-67175800-8	chr15	67175653	67175853	+	897.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 1 of 8)	intron (NM_009177, intron 1 of 8)	1129.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	2.7941953074607	2.70048610506773	3.12258982905795	2.79140958981293	2.51551035445952	2.90328599183133	2.58566199304529	2.59184825626755	-1.00857858594782	0.143984733509735	0.422642851071835
Merged-chr11-21224614-4	chr11	21224511	21224711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14421.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	6.10698375023144	6.47545976211737	6.06564590372657	6.06892852827465	6.41513946072825	6.13021223436106	6.21420445776597	5.90073066656982	-0.000553565457392775	0.998256793293192	0.999197326608957
Merged-chr12-26342363-1	chr12	26342263	26342463	+	641.75	f0_balb.idr	intron (NM_080563, intron 2 of 8)	intron (NM_080563, intron 2 of 8)	-4347.0	NR_130981	75243.0	Mm.444753	NR_130981	ENSMUSG00000114048	4930549C15Rik	-	RIKEN cDNA 4930549C15 gene	ncRNA	3.00561502307309	3.16273945941506	3.44316282089708	2.91632677285159	2.54527885781187	2.63087935880734	2.51735930488693	2.67778485621568	-2.99525519955489	0.000203907947919143	0.00369594189583312
Merged-chr2-84252275-4	chr2	84252173	84252373	+	977.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	172993.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	5.17212450702166	4.66499593941105	4.83530617385807	4.98999970724549	5.3316435717816	4.89088600465309	5.28507554209181	4.79328695418444	0.347612734125685	0.31532572171665	0.627105605858262
Merged-chr1-51509230-4	chr1	51509131	51509331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_151621)	TTS (NR_151621)	-30832.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	6.4902119581855	6.39678707432164	6.01358619440853	6.01781502077818	6.25114553301757	5.92005927538999	6.14920112824759	5.96382262515871	-0.232739424213776	0.363926258304677	0.668909662018054
Merged-chr1-85794524-6	chr1	85794422	85794622	+	682.777771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355047, intron 1 of 9)	intron (NM_001355047, intron 1 of 9)	505.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	3.25316812841147	3.34288807312528	3.6210604208653	3.23381045518648	3.50017533476061	3.23683671352915	3.11640631878618	3.42227869660236	-0.111754453156672	0.839219950317837	0.938895262970456
Merged-chr17-29478495-4	chr17	29478411	29478611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-12534.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	6.1702158677113	6.1446893710984	5.95854292073422	5.89627324979365	6.10012021174718	6.22386482288879	6.12009393729765	6.38209514956027	0.261752620069855	0.268861928358961	0.580429593184657
Merged-chr10-44005434-3	chr10	44005349	44005549	+	718.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172393)	promoter-TSS (NM_172393)	-603.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	3.10217787239592	3.05388380863405	3.27266786198564	3.30236512077434	3.0700401627316	3.27247413548151	3.15004886880897	2.90571140034546	-0.347413199065205	0.546226210490544	0.796283117565136
Merged-chr17-86671408-1	chr17	86671308	86671508	+	930.0	f0_balb.idr	Intergenic	Intergenic	-82456.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	3.04374013601764	2.93869295709302	3.20841569811675	3.2965072485881	2.65374068894508	2.8192827309989	2.91190037044089	3.04253061406527	-1.21604891879018	0.0588738814238052	0.25547668145248
Merged-chr2-93187513-4	chr2	93187421	93187621	+	973.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356535)	promoter-TSS (NM_001356535)	-27.0	NM_001356536	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	4.75406709491278	4.7837405559478	4.71369114509885	4.52615981734436	5.18852314332629	5.00921012485162	5.42541659154185	4.97415514162811	0.952815819991823	0.00349336798781539	0.0360055661750234
Merged-chr19-7494906-1	chr19	7494806	7495006	+	1000.0	f0_c57.idr	intron (NM_146091, intron 1 of 12)	CpG	468.0	NM_146091	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	4.20225289108556	4.62563648810745	4.44094985728036	4.2966722504029	4.37565259680844	4.65715381230374	4.85418645044674	4.60123862019648	0.513382170086539	0.176351076502328	0.471313531121512
Merged-chr6-106805073-4	chr6	106804967	106805167	+	984.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4980.0	NM_175357	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	5.08602905088716	5.05254861456306	4.56564966633931	4.98074418532765	5.03181173245983	5.57600844226326	5.06191364808057	5.20894500436369	0.547627516312229	0.104911131541258	0.356272396563703
Merged-chr1-60804208-3	chr1	60804046	60804246	+	835.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	57758.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	2.85765303654311	3.12409112153223	2.97439384494656	3.02808396723453	2.66329683189768	2.6141503605182	2.72178201714135	2.66005100744071	-1.67586152965118	0.0126363143984358	0.0932062406804419
Merged-chr11-121237632-2	chr11	121237532	121237732	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026272, intron 1 of 10)	intron (NM_026272, intron 1 of 10)	396.0	NM_026272	67608.0	Mm.291832	NM_026272	ENSMUSG00000000056	Narf	4430402O11Rik	nuclear prelamin A recognition factor	protein-coding	3.17833295366449	3.43739380057608	3.23812899491978	3.09250840635106	3.26578797186001	3.09126862482865	3.2260753373504	3.39945790219246	0.0534800294059972	0.922563859779966	0.971307305090866
Merged-chr15-74923617-4	chr15	74923510	74923710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31441.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	5.6651671764413	5.78801545435676	5.82646030053711	5.92715582817575	6.3836623825714	6.12253696742579	6.43042181387767	6.11271569547894	0.714376129564485	0.00333178678084718	0.034661393053774
Merged-chr15-83128930-3	chr15	83128797	83128997	+	844.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 7 of 7)	intron (NM_001347082, intron 7 of 7)	-6096.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	3.2512105967593	3.53162728554144	3.11666772788418	3.18835718012064	3.81097072971794	3.65657581496656	3.30248266471332	3.53710779473332	1.06179463281003	0.0482124504791549	0.226575598353081
Merged-chr12-8260468-3	chr12	8260371	8260571	+	975.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172401, intron 4 of 6)	intron (NM_172401, intron 4 of 6)	41483.0	NM_001312876	238057.0	Mm.271308	NM_013527	ENSMUSG00000037660	Gdf7	BMP12	growth differentiation factor 7	protein-coding	4.61821785943147	4.34757225913548	4.43021278081514	4.56746130946919	4.066477946455	4.06532068797721	4.52522068986575	4.15657185083406	-0.681707579373385	0.0894040771791909	0.32641528543909
Merged-chr11-98949833-4	chr11	98949734	98949934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177302, intron 2 of 9)	intron (NM_001177302, intron 2 of 9)	10123.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	7.24500867791284	6.9601439561273	7.04212340150727	7.12620438702227	7.12230893620532	7.00513632532608	7.18911775227826	7.10899383232602	0.0164911943966254	0.929688636186415	0.974613500178398
Merged-chr5-95924714-4	chr5	95924589	95924789	+	977.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32250.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	5.62633113177566	5.91627921356928	5.76905147299922	5.95750818074002	5.35964226772601	5.05081737571079	5.00925715289761	5.21416876959421	-1.14151441314961	8.68639742982115e-05	0.00180364376504446
Merged-chr17-72916015-2	chr17	72915918	72916118	+	883.416626	f0_balb.idr|f1_balb.idr	Intergenic	MIRc|SINE|MIR	-2287.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	4.2972048027195	4.36205619462936	4.41139879454599	4.71863465133569	3.36960297484441	3.4797311424161	3.69249937400782	3.64143925623432	-2.82157236172351	5.13658565221638e-08	2.34369891114814e-06
Merged-chr18-39553243-8	chr18	39553138	39553338	+	953.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65993.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	3.97611265302411	3.98345898530036	4.06978306812795	4.14909806038224	4.05944453090848	3.88646718056923	3.80824864020017	3.92521554809057	-0.336940312940827	0.431757681350832	0.721867850536041
Merged-chr6-37262705-4	chr6	37262640	37262840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	37236.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	6.36086080860645	5.70479164925961	6.76289282067496	6.88810922549863	5.52415651580652	5.8102757526384	5.62860097434337	6.0745978001008	-1.14149898926843	0.000433035201169118	0.00686328492184739
Merged-chr18-90508519-4	chr18	90508420	90508620	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAP1-MM_LTR|LTR|ERVK	-1634.0	NM_198295	67988.0	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	5.02888623048463	5.12895793519037	4.62147018296336	4.52714268727093	4.87226702758424	5.37706107394455	4.94000061512884	4.15594305065813	0.109438693188785	0.801099229192468	0.923337043240231
Merged-chr2-113327692-4	chr2	113327615	113327815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285458)	promoter-TSS (NM_001285458)	-21.0	NM_001285458	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	7.86213695644537	7.79822131785884	7.98303204030485	8.00045360008889	7.63309150165284	7.83264912655615	8.05969702809436	7.75030365117997	-0.119959627592409	0.497137239934709	0.766982020988234
Merged-chr15-27628033-4	chr15	27627942	27628142	+	991.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 1 of 6)	intron (NM_001013792, intron 1 of 6)	2651.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	5.81460857232975	6.01054641953034	5.72189365800409	5.58616054162282	5.55956224393789	5.25331472118107	5.6684239047681	5.59001629200436	-0.425306714234795	0.127624016867489	0.397486990154572
Merged-chr3-153293060-1	chr3	153292960	153293160	+	804.200012	f0_balb.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	5589.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	3.898359842581	3.93606342586739	4.11430691678481	3.94048182760927	3.77406830928528	3.50227855200541	3.68119827947656	3.51743458480407	-1.01782495189069	0.0322328417724977	0.17567392377677
Merged-chr5-98030528-4	chr5	98030438	98030638	+	859.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133738, exon 1 of 17)	exon (NM_133738, exon 1 of 17)	424.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	3.95452389494788	3.76179945591558	4.30247930651203	4.13476605956869	3.93975684176211	3.97092909210527	4.03445830744797	4.09519908183743	-0.126902200743592	0.771318086295522	0.910379161490028
Merged-chr3-51654557-3	chr3	51654485	51654685	+	928.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6594.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	3.28645531804732	3.41907175292268	3.55941690251828	3.74336807033353	3.0571274381354	3.399596353525	3.33373361040824	3.28523325306651	-0.914191352974172	0.0993073411876834	0.345652676694285
Merged-chr2-167776270-6	chr2	167776162	167776362	+	929.711121	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85085.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	3.5287436703964	3.5619011380341	3.64478436443514	3.60532763494612	4.19429027727194	3.76292844648487	3.68408896823563	3.79873362862303	0.891454837579325	0.0597770780868477	0.257839815849214
Merged-chr5-49472774-4	chr5	49472672	49472872	+	646.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-187113.0	NM_001199244	80334.0	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	4.59922786025061	3.85165754598139	4.1083629757367	3.65319493297921	3.8015277336148	3.92042342478169	4.26070415635984	4.10577323915573	-0.166564202299975	0.738320138879783	0.896701754212797
Merged-chr6-83677854-4	chr6	83677764	83677964	+	881.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144943)	promoter-TSS (NM_144943)	-7.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	4.38286195415909	4.65433688581115	4.70834940812653	4.64309898665475	4.57258449308118	4.41612318752447	4.36442525123163	4.74047242844497	-0.159870091086136	0.661459599785054	0.859389646833337
Merged-chr10-62553693-4	chr10	62553554	62553754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24803.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	7.35771052245331	7.37405610136653	7.15598469719898	7.29704243665959	7.16526318246085	7.17273272334963	7.28248240167023	7.19649034970432	-0.13063212699983	0.464580663560037	0.745505490712625
Merged-chr4-133874702-4	chr4	133874604	133874804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285506)	promoter-TSS (NM_001285506)	27.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	6.29795404185559	6.18832982064687	5.72027072189046	5.89151394446339	5.84863936029014	5.73146556495207	5.52462711569606	5.93259884930074	-0.428628112189565	0.11680855213244	0.378172312820962
Merged-chr19-9954657-4	chr19	9954538	9954738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25962.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	6.69942976873491	6.93587966079853	6.98911096746844	7.19480794391775	6.96193284453704	6.92306017209877	6.6510314358331	6.64866868580903	-0.238702434362243	0.272402227976134	0.583839752638158
Merged-chr9-44268650-4	chr9	44268531	44268731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163743)	promoter-TSS (NM_001163743)	-32.0	NM_001163742	270151.0	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	6.11532409374306	6.03759516745318	5.86747616245795	5.85201435103535	5.80513865942926	6.04215073739571	5.3751603993041	5.55316972136914	-0.402132614008117	0.144576839087029	0.423752720995496
Merged-chr7-45813966-4	chr7	45813865	45814065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011181, intron 1 of 11)	CpG	351.0	NM_011181	19158.0	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	4.92239168992507	4.8872982063667	5.08998520316769	4.85183086612564	4.87557292002321	5.13105825552131	4.93447529304741	4.91991142688959	0.0611798898982761	0.846797105996134	0.942018787399771
Merged-chr2-75706145-2	chr2	75706045	75706245	+	921.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1482.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	2.91172891725816	3.09321819178391	3.10283131017714	2.88030576807515	2.94306938500954	3.08924571091057	3.03127953571235	3.45939920767215	0.590594322479733	0.318402377947696	0.630331326934753
Merged-chr15-99702098-4	chr15	99701995	99702195	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031842)	promoter-TSS (NM_031842)	-192.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	5.70150888377959	5.80565531545542	5.12736637883769	5.68503277157543	5.40520152315479	5.51613690590474	5.85350891452209	5.74622510257558	0.0415410094887662	0.889738873547634	0.958662036977906
Merged-chr3-106556054-4	chr3	106555954	106556154	+	772.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025582, intron 3 of 6)	ORR1G|LTR|ERVL-MaLR	-8252.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	3.80344573618101	3.86529253950147	3.75227908590128	3.77593188657248	3.96970103331781	4.02270330208717	3.51024072234297	3.69641330784431	0.0628260282765616	0.89306867537332	0.960063662846577
Merged-chr3-30855962-8	chr3	30855947	30856147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134386)	promoter-TSS (NM_001134386)	97.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	5.26593697649759	5.23233442904085	5.03396128648323	5.19951790243345	5.10685812857724	5.31430729195969	5.14684860492042	5.65169669211726	0.235667577394349	0.444031642470082	0.730462472425057
Merged-chr14-73139953-4	chr14	73139849	73140049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-2561.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	5.82444462167324	6.05709068460019	6.32683258163444	5.9232282409343	5.80615240699537	5.8188774936561	5.79589539391926	6.16410781955851	-0.216707402440191	0.406803000252601	0.703221069433162
Merged-chr4-116655777-4	chr4	116655667	116655867	+	920.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4093.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	4.49094060322511	4.56065925615474	4.57769417106413	4.81204973870808	4.97797419633664	4.4806360063282	4.88198205591765	4.5747800751534	0.266484682087887	0.46855688808549	0.747803507343786
Merged-chr18-20714029-4	chr18	20713914	20714114	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 3 of 8)	intron (NM_019737, intron 3 of 8)	32390.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	5.1039108429596	5.10110876179359	5.10476852931598	5.37300518583448	4.99164644537165	5.06362492453418	5.54754489721376	5.10129961036918	0.00206513962118343	0.994876296180475	0.998185865918132
Merged-chr1-161512372-4	chr1	161512277	161512477	+	886.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	17720.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	4.86390423380583	4.51700349190592	4.52438211047994	5.00785453057589	4.2490855467759	4.69986742355089	4.87333218714754	4.47753199141198	-0.364931898362445	0.353319502367561	0.660177666767879
Merged-chr10-22166212-4	chr10	22166125	22166325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359809, intron 1 of 7)	intron (NM_001359809, intron 1 of 7)	-7272.0	NM_198193	379043.0	Mm.439724	NM_198193	ENSMUSG00000053219	Raet1e	-	retinoic acid early transcript 1E	protein-coding	5.98666717821565	6.09378723465191	6.07315021320391	5.43875509200079	6.1489381495591	6.43820330150869	6.02128572473488	5.98344158113152	0.394987120213374	0.159438545553222	0.446987707078322
Merged-chr4-41697692-4	chr4	41697658	41697858	+	781.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016673)	promoter-TSS (NM_016673)	-667.0	NM_016673	12804.0	Mm.425178	NM_016673	ENSMUSG00000028444	Cntfr	Cntfralpha	ciliary neurotrophic factor receptor	protein-coding	3.43408842952868	3.25510170114953	3.32080373277403	2.84080182671235	3.48590516643727	3.37509950999061	3.47306274585498	3.63349542363287	0.979953108959613	0.0833693615448209	0.313859828920442
Merged-chr11-70668905-4	chr11	70668802	70669002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178116)	TTS (NM_178116)	514.0	NM_172561	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	7.96155907091674	8.17482546766569	8.01733594866357	7.72162876693304	7.97009617454038	8.30330675021805	8.07484176569968	7.64282933562406	0.0561971358414453	0.779397168108504	0.91394323833457
Merged-chr3-136834057-4	chr3	136833971	136834171	+	882.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 2 of 13)	intron (NM_008913, intron 2 of 13)	164005.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	4.20806880663561	4.67480425141795	4.20870084852483	4.10786249308684	4.24948243316154	4.18531110735044	4.32195667085834	4.20614458967005	-0.175931691351798	0.669375323949446	0.863479905771059
Merged-chr1-16106520-3	chr1	16106408	16106608	+	824.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133832, intron 1 of 5)	intron (NM_133832, intron 1 of 5)	626.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	3.59524252997581	3.36709740657788	3.43406180143264	3.59863011983433	3.38580237142809	3.54799943115169	3.67660788606881	3.43229325391913	0.0116026102837706	0.981529930267954	0.993421003406127
Merged-chr5-34169505-4	chr5	34169364	34169564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289804)	promoter-TSS (NM_001289804)	-40.0	NM_146159	231123.0	Mm.319286	NM_146159	ENSMUSG00000079555	Haus3	D4S43h|D5H4S43|D5H4S43E	HAUS augmin-like complex, subunit 3	protein-coding	7.65746122737402	8.00953833212456	7.71868984083849	7.69577104650665	7.99436349057862	8.16597699575165	8.10187811712174	7.98982835710808	0.369142657935841	0.0309069647240846	0.170708996825919
Merged-chr8-46497101-3	chr8	46497011	46497211	+	884.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302163, intron 2 of 20)	intron (NM_001302163, intron 2 of 20)	6145.0	NM_001302163	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	3.63323092244182	3.52871086035158	3.37426439805894	3.43125230405	3.50372111469923	3.29985005471282	3.36181186763513	3.25224758129599	-0.44044720562676	0.396740316425598	0.695372415340369
Merged-chr2-167691549-4	chr2	167691436	167691636	+	984.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015500, intron 1 of 1)	intron (NR_015500, intron 1 of 1)	359.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	3.99607625251376	3.98767979275043	4.56163310468855	4.33475630789513	4.36777700842957	4.06448269879308	4.43083276810892	4.28589713967894	0.12705597948859	0.763724663210888	0.907339369485629
Merged-chr19-23135053-4	chr19	23134940	23135140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6186.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	7.65268566226354	7.9854475125078	8.04963686338042	7.76138862257337	7.48880842912887	7.92283806038886	7.91345657797249	7.54082266898878	-0.186583772754519	0.34318841149574	0.651877563628619
Merged-chr11-72690362-3	chr11	72690261	72690461	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009671, intron 1 of 24)	intron (NM_009671, intron 1 of 24)	359.0	NM_009671	11736.0	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	5.15375740176362	4.94863657459856	5.35599787954291	4.99048885984363	5.03545234166589	5.16274021969814	5.06577431002257	4.91165437935589	-0.123334357736339	0.694845670679704	0.876148420739244
Merged-chr8-26961910-4	chr8	26961791	26961991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15445.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	5.65043895805969	5.94987623591515	5.75253923763825	5.9209887217853	5.61212064263009	5.99701588086322	5.42544349777734	5.47905998491941	-0.312735181232253	0.258695865095411	0.570489393947544
Merged-chr7-92741566-4	chr7	92741466	92741666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029494)	promoter-TSS (NM_029494)	-107.0	NR_015510	666737.0	Mm.473620	NR_015510	ENSMUSG00000074024	4632427E13Rik	AU015482	RIKEN cDNA 4632427E13 gene	ncRNA	9.24117156508172	9.22406084410644	9.06847935487286	9.33873104444691	9.0385878834934	8.89516527849552	9.25139166244147	8.85251007244438	-0.25255695084428	0.11132558320664	0.368681299510704
Merged-chr13-48965777-4	chr13	48965694	48965894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033268, intron 1 of 17)	intron (NM_001033268, intron 1 of 17)	2034.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	6.27951173282887	5.77348204747863	6.40323376085271	6.37845929429077	6.22082112332552	6.32070139063176	6.2112967367626	6.14032387499209	-0.0202153683171402	0.935686174268175	0.976639892179174
Merged-chr2-27761929-4	chr2	27761811	27762011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011305, exon 10 of 10)	3' UTR (NM_011305, exon 10 of 10)	51328.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.45289050880992	5.72671666778279	5.36616410562744	5.31929603005692	5.44565841864329	5.41624507415291	5.17989273338046	5.74971170429896	-0.0122382053830603	0.967206207170394	0.988490012786718
Merged-chr17-17600176-4	chr17	17600068	17600268	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	24321.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	5.09301882732529	5.23549448505864	4.915580381974	5.27362749384063	5.45015546651482	4.8885465992396	5.22512665523122	5.12342414210671	0.0999803828916145	0.755875739463074	0.90404582627732
Merged-chr12-17689184-2	chr12	17689084	17689284	+	787.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-1625.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	3.07769541399672	2.93049471592281	3.20616875087461	3.30585114152611	3.62187195563873	3.25498307729495	3.25365574445803	3.5729429185145	1.04873183080505	0.068517123850885	0.279531172040015
Merged-chr6-118479395-5	chr6	118479244	118479444	+	796.26001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011763)	promoter-TSS (NM_011763)	-71.0	NM_011763	22750.0	Mm.106970	NM_011763	ENSMUSG00000072623	Zfp9	1810048F22Rik|AU016736|Krox-4|Zfp-9|mszf79-2	zinc finger protein 9	protein-coding	3.8436178702954	4.19871424956314	3.89119156704521	4.12242095088801	3.21782187956494	3.28899029115523	3.62257596377926	3.51787419163887	-2.00834569460646	0.000165834531432492	0.00311121141613953
Merged-chr8-56295312-4	chr8	56295217	56295417	+	810.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 2 of 6)	intron (NM_008278, intron 2 of 6)	765.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	4.19929825764324	3.63738291920007	3.98165608195554	3.76016650653144	3.57163053321803	4.05675865999578	4.09808321051923	4.02591129549887	0.12325950249213	0.797622100201435	0.921834504615151
Merged-chr13-52581096-5	chr13	52581010	52581210	+	830.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2327.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	4.0121175140077	3.72463131454372	3.87920412033779	3.85504842023391	3.67384052877847	3.67764670634191	3.8151024553593	3.4978830188227	-0.593424118143386	0.203346570988517	0.506170662223812
Merged-chr3-149072737-3	chr3	149072623	149072823	+	660.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118088.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	3.34111202980413	3.40140583701037	3.34155714355053	3.60594919565122	3.2796641603262	3.20957828577807	3.02442263635107	3.225076143993	-0.909498737789593	0.101198557160773	0.349224757719099
Merged-chr12-85486139-4	chr12	85486050	85486250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	12260.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	8.27715240629766	8.59297841470455	8.35775513551166	8.29094828770123	8.54903194610498	8.61527329158283	8.7610856455361	8.41644480077695	0.259472607784145	0.115710095809083	0.376388305895016
Merged-chr2-129320175-4	chr2	129320072	129320272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10200.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	7.73883172581599	8.07944263934655	8.03041060080803	7.78781624777649	7.58036307970458	7.43867202354266	7.73382815103738	7.48911382451941	-0.4546384378034	0.0121419942662637	0.0906878289484141
Merged-chr2-164953418-3	chr2	164953311	164953511	+	935.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013599, exon 11 of 13)	exon (NM_013599, exon 11 of 13)	5192.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	3.90480047800982	3.84744601022646	3.66851802667453	3.48013909223811	4.06944842291866	4.32635286303313	4.37624615519806	4.59982315465527	1.68189108492736	0.000145891463841806	0.00278946066756742
Merged-chr13-56758691-4	chr13	56758582	56758782	+	893.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55014.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	4.16025292017146	4.3278228026853	4.16090055927457	3.95814894694641	3.9550136759239	3.60783547023137	4.22589844771601	4.01985948689908	-0.476282452270242	0.293757636545766	0.606189185560296
Merged-chr4-83323776-1	chr4	83323676	83323876	+	1000.0	f0_balb.idr	intron (NM_027238, intron 1 of 19)	CpG	413.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	6.50164102899431	6.42517365556007	6.94565259996177	6.31289654507817	6.4422760621451	6.38251889438359	6.41892515221809	6.60926663173804	-0.131747211204178	0.582592426644351	0.81668109351953
Merged-chr4-115830727-4	chr4	115830635	115830835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175308, intron 1 of 3)	intron (NM_175308, intron 1 of 3)	2643.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	6.55804234023609	7.31742102800926	7.12644294483961	5.83734126895584	6.74162716936385	7.13256172930732	6.24855457217553	6.48605808894771	-0.198354268041419	0.696469435830684	0.877228600292293
Merged-chr3-116649543-3	chr3	116649449	116649649	+	703.333313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_008246, intron 2 of 11)	intron (NM_008246, intron 2 of 11)	13128.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	3.70776908476176	3.94498710981456	4.06993105516337	4.11127538290094	4.31988550186744	3.82703518109564	3.80733788992968	4.06742912393945	0.157028628377654	0.733445364396403	0.894472844896284
Merged-chr15-89427358-4	chr15	89427257	89427457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_004843, exon 8 of 27)	non-coding (NR_004843, exon 8 of 27)	-1495.0	NM_009948	12895.0	Mm.227738	NM_009948	ENSMUSG00000078937	Cpt1b	Cpt1|Cpt1-m|Cpti|Cpti-m|M-cpti	carnitine palmitoyltransferase 1b, muscle	protein-coding	5.11382471374404	5.23272182235509	4.85511475299472	5.17228149114385	5.3360110165032	5.41504829500818	5.24625590809496	5.17660036523029	0.344361104471978	0.249934032112664	0.561041170385295
Merged-chr19-32779338-4	chr19	32779222	32779422	+	917.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 2 of 8)	intron (NM_008960, intron 2 of 8)	21745.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	5.11797238010088	4.79586024191905	5.21117649931414	5.23392412114	5.1411346436329	5.04914009597416	4.96031284370842	5.04987039424101	-0.100359882771531	0.750768080347371	0.901855648088396
Merged-chr11-59778720-4	chr11	59778622	59778822	+	736.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_012027, exon 24 of 24)	3' UTR (NM_012027, exon 24 of 24)	8500.0	NR_110894	194908.0	Mm.344651	NM_183139	ENSMUSG00000043648	Pld6	4933433K01Rik|Gm10|Zuc|mZuc|mitoPLD	phospholipase D family, member 6	protein-coding	4.23326986426723	4.20626548982465	4.0466566092608	3.92581510164014	4.29774443450416	4.22075965881111	4.21495031756768	4.18702558721628	0.350451419557779	0.382382612547865	0.684468240607269
Merged-chr16-38467584-4	chr16	38467473	38467673	+	965.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359898, intron 1 of 5)	intron (NM_001359898, intron 1 of 5)	8640.0	NM_009855	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	4.73235494512738	5.95686146714274	5.40236444743093	4.81001920781619	5.63483777206285	5.20017347087428	5.10214166674281	4.94158874068051	-0.131091712743783	0.753335375555713	0.902798885097597
Merged-chr8-41019454-4	chr8	41019332	41019532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015457, intron 1 of 2)	intron (NR_015457, intron 1 of 2)	1964.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	5.88546122126662	5.50188130155262	5.77437609475012	5.23682621353255	5.88929596531864	5.77397270169289	5.45830662686664	5.77025869639649	0.223987666902187	0.450643999346225	0.735401470002029
Merged-chr12-32200812-5	chr12	32200678	32200878	+	968.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020272, intron 3 of 10)	intron (NM_020272, intron 3 of 10)	7560.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	3.84643405993825	4.17809661508216	3.79493382821824	3.77029639482133	3.81535074510089	4.11491266351238	3.48737873383111	3.89470563719291	-0.173444023857866	0.718549159175732	0.887590208787627
Merged-chr6-54956568-4	chr6	54956486	54956686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	15075.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	6.78925403652309	6.63949718736054	6.76100208106011	6.83717368744176	7.02997878727359	7.43427740309815	7.01660469307648	6.89689429015115	0.478526394913981	0.0225877120810983	0.138804347597384
Merged-chr8-83185572-1	chr8	83185472	83185672	+	644.0	f0_balb.idr	intron (NM_001111304, intron 1 of 20)	intron (NM_001111304, intron 1 of 20)	20220.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	3.36641347683542	3.45679486515198	3.41454467396065	3.1614198967084	2.68942425888836	2.70457669543999	2.82522024311568	2.83221305548625	-2.92272020796896	7.04604087198134e-05	0.00151108810854703
Merged-chr1-151039382-4	chr1	151039288	151039488	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-45953.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	3.94372434904345	3.60303860369849	3.9921747406443	3.93672568504357	4.09694056420757	4.0161649667739	4.14804956660584	3.73090515232686	0.361474140139553	0.421561344342864	0.714001052191097
Merged-chr18-21300326-4	chr18	21300200	21300400	+	951.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033445)	promoter-TSS (NM_001033445)	-161.0	NM_001033445	381126.0	Mm.312276	NM_001033445	ENSMUSG00000042680	Garem1	C86169|Fam59a|Garem|Gm944|mKIAA4238	GRB2 associated regulator of MAPK1 subtype 1	protein-coding	6.87198694512308	6.79147119250043	6.61708310980278	6.75649790321556	4.98408692890643	5.14577373068176	5.18302571732754	5.16517889781713	-2.71063295317634	1.56757649592127e-24	9.14578093468687e-22
Merged-chr7-31000748-4	chr7	31000614	31000814	+	789.387512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18793.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	4.03022476281331	3.78320441821067	3.93332153366694	4.09373935713243	3.89352355786915	4.10588046496723	3.81290774945988	4.28221111854582	0.159866853678893	0.717866943258992	0.887198522120012
Merged-chr4-43256365-4	chr4	43256276	43256476	+	955.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081413, intron 29 of 39)	intron (NM_001081413, intron 29 of 39)	-10783.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	4.74333351067494	4.62970670341413	4.6319565523501	4.67902580743525	4.56495978693618	4.59580796685066	4.72148970941482	4.41724472335119	-0.202834504436032	0.559425506838444	0.803828312727864
Merged-chr17-65802511-4	chr17	65802343	65802543	+	918.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152099, intron 2 of 20)	intron (NR_152099, intron 2 of 20)	19088.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	3.75014860566623	3.90516096810072	3.80892803481835	4.23512615098738	4.49570213636691	3.98617088668946	4.18123070617705	4.01705404979692	0.612886826599716	0.189302253840681	0.488200910366879
Merged-chr12-118930741-4	chr12	118930648	118930848	+	980.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029961, intron 11 of 27)	intron (NM_029961, intron 11 of 27)	35673.0	NM_029961	77706.0	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	4.47367396505997	4.91299488239223	4.65781688254963	5.0670799828003	5.21183881191346	4.83505927293566	5.09498291292093	4.88903213807702	0.404934974245947	0.257734693774902	0.569605916980896
Merged-chr3-131272096-4	chr3	131272000	131272200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008212)	promoter-TSS (NM_008212)	1.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	7.45319305505421	7.39767487121166	7.29302194355668	7.69594319774782	7.4055563240513	7.38128937228124	7.59331900439721	7.19874750554898	-0.103086567548076	0.595589407205828	0.824021972428006
Merged-chr13-3546882-3	chr13	3546796	3546996	+	624.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	RMER6A|LTR|ERVK	8821.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	3.3189907841772	3.09932416875275	3.20285859463658	3.16557109948075	3.12869880051538	3.54000703511282	3.30645827782574	3.42418021930672	0.579156864335651	0.283428086314442	0.59551104748873
Merged-chr8-122432540-4	chr8	122432452	122432652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301284, intron 1 of 4)	intron (NM_001301284, intron 1 of 4)	388.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	7.5880982219014	8.19168761362195	7.75680700808248	7.16634991081508	8.00546203147305	7.9804534794495	7.58729162681958	7.3699049001449	0.0530706719227453	0.836481866005397	0.937784576159996
Merged-chr10-41303257-4	chr10	41303154	41303354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133999)	promoter-TSS (NM_133999)	-13.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	7.0335749272269	7.15963484797181	6.86654708317079	6.77634435328521	6.95827000370026	7.22251293557139	7.02325173892682	6.87543678834844	0.0873159521577165	0.670516593909824	0.864160144813546
Merged-chr7-127091771-3	chr7	127091669	127091869	+	966.5277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178901, intron 1 of 1)	intron (NM_178901, intron 1 of 1)	333.0	NM_178901	101602.0	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	3.74103464741174	4.05073026389939	4.17723446869266	4.12542980783868	3.21104085411797	3.28348464763501	3.50255854741168	3.57376678000581	-2.12357195814714	7.91187650181042e-05	0.00166369115959339
Merged-chr2-124620024-4	chr2	124619927	124620127	+	884.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	9731.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.06935702412581	4.34415085050595	3.80011976790327	4.51936198012603	3.79596887023597	4.29011485914629	3.89919683310191	4.29059620840326	-0.360345493876639	0.447816666346728	0.73332468018769
Merged-chr14-36868917-1	chr14	36868817	36869017	+	548.0	f1_balb.idr	Intergenic	Intergenic	50618.0	NM_001347503	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	3.17759609005858	2.96640660999175	3.0636821605828	3.26781969069991	3.21262186660258	3.17153904064616	2.99275589945594	2.87044858246965	-0.230640717391198	0.69757304461186	0.877936058816528
Merged-chr13-83585509-4	chr13	83585400	83585600	+	893.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347576, intron 2 of 10)	intron (NM_001347576, intron 2 of 10)	11893.0	NM_001347569	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	4.60291335141453	4.47676603962528	5.23660032879343	5.29360005773271	4.55338012456431	4.5610270355094	4.15338207342969	4.27679438047661	-1.20579115669379	0.00455012093061859	0.0442817049830863
Merged-chr5-145232759-4	chr5	145232658	145232858	+	899.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028298, intron 1 of 3)	intron (NM_028298, intron 1 of 3)	999.0	NM_028298	72611.0	Mm.206555	NM_028298	ENSMUSG00000007812	Zfp655	2700038I16Rik|9030409O18Rik|mKIAA4222	zinc finger protein 655	protein-coding	3.96839831915873	3.95306837340072	3.73927972541601	4.12947135013954	4.42837112240766	4.19550369373828	4.0531192517765	4.54912688684584	0.89352159608461	0.0397864246143493	0.201076250896391
Merged-chr8-105332770-4	chr8	105332690	105332890	+	990.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 13 of 21)	intron (NM_177699, intron 13 of 21)	6426.0	NM_025486	66320.0	Mm.29990	NM_025486	ENSMUSG00000014856	Tmem208	1700006C06Rik|2610030K20Rik|Hspc171	transmembrane protein 208	protein-coding	4.17186596247971	4.52481208371515	4.90017127449797	4.99840765946646	4.81054981944709	4.06317312429785	4.5658859670858	4.32311501274643	-0.472611904052364	0.293495147304504	0.606008746948365
Merged-chr2-4567807-4	chr2	4567711	4567911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 2 of 11)	intron (NM_001177844, intron 2 of 11)	8057.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	5.22781473081877	5.4631624804536	5.52073751080906	4.91168949264366	5.53517385624321	5.69364774730199	5.5922038645317	4.9726723301777	0.333319167475757	0.317028354276756	0.628905690750891
Merged-chr13-88828500-4	chr13	88828414	88828614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037987, intron 1 of 10)	intron (NM_001037987, intron 1 of 10)	7042.0	NM_001037987	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	6.12777185080917	6.18829575894504	7.19661901891279	6.90864492730928	7.49424725916925	7.26026484691566	7.95556294242784	7.42985454169547	1.1838284893841	6.05774499596422e-05	0.00133081552798684
Merged-chr2-118554888-1	chr2	118554788	118554988	+	1000.0	f0_c57.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	-5202.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	3.01294724717398	2.92417358537716	3.01327131287486	2.37435738107904	4.19164701033527	4.19153532987498	4.58333796692281	4.28893351009979	8.17910761790091	2.1587881011138e-17	5.07172895742086e-15
Merged-chr15-102140764-4	chr15	102140670	102140870	+	901.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3416.0	NM_008344	16012.0	Mm.358609	NM_008344	ENSMUSG00000023046	Igfbp6	IGFBP-6	insulin-like growth factor binding protein 6	protein-coding	4.53734438755134	4.49654009791919	4.84164165640606	4.92024379593219	4.46303094144143	4.79345798036253	4.63890923916854	4.69590715312574	-0.173835082276086	0.632931470516187	0.844280824760539
Merged-chr13-45358403-3	chr13	45358298	45358498	+	982.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31344.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	4.27370475876357	4.45880931034106	4.79991515869584	4.42218235564834	3.46008386935823	3.99726076197675	3.53026740468245	4.31426980007262	-1.64722488284639	0.00161304948695678	0.0197838644465478
Merged-chr1-74375553-1	chr1	74375453	74375653	+	1000.0	f0_balb.idr	intron (NM_013612, intron 1 of 14)	intron (NM_013612, intron 1 of 14)	350.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	6.51807178793092	6.74263740451978	6.19118123098986	6.49606240705608	6.82126424325287	6.67924892904664	6.91214331345482	6.90566670324163	0.46915713907856	0.0314018260101477	0.172609573873879
Merged-chr11-114168385-3	chr11	114168307	114168507	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29851.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	4.19374894103011	4.60143028626247	4.25437299225736	3.65322982414711	6.00323322650495	5.18946739963447	5.25662451479225	5.57367865352435	2.73454254987106	2.32972323557341e-11	1.98121111331995e-09
Merged-chr6-129230407-4	chr6	129230311	129230511	+	990.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7634.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	6.01356485053493	6.56469419075152	5.90391518553332	5.57267631295585	6.54465218866742	6.1695111391682	5.43993688133326	5.1756678701161	-0.190660614822086	0.747650620298367	0.900670607287978
Merged-chr6-125354977-6	chr6	125354912	125355112	+	924.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	5289.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	3.69935950243542	3.91709710950802	4.08195877688626	3.96151570153024	4.06565728514997	4.15873321887505	4.06407361200057	4.61192906761601	0.819751892726614	0.0629303620177142	0.265977093881532
Merged-chr17-36930458-1	chr17	36930358	36930558	+	873.0	f0_balb.idr	intron (NR_045439, intron 2 of 2)	intron (NR_045439, intron 2 of 2)	6666.0	NR_045439	73286.0	Mm.426884	NR_045439	ENSMUSG00000092239	1700031A10Rik	-	RIKEN cDNA 1700031A10 gene	ncRNA	2.90731227436268	2.63931654659302	2.73938404420822	3.25218785759028	2.26490062667357	2.33873285498047	2.3934027829206	2.31898566241129	-4.44219154933761	5.35066961600389e-05	0.00120030038637737
Merged-chr16-4489276-4	chr16	4489185	4489385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361474, intron 3 of 5)	intron (NM_001361474, intron 3 of 5)	33790.0	NM_001347162	106393.0	Mm.35811	NM_175347	ENSMUSG00000022519	Srl	9830004M20Rik|AW108387|sar	sarcalumenin	protein-coding	5.64451941416147	5.74060615375342	5.80830417112941	5.47545060855068	5.48794605214187	5.38316090545338	5.34232721671364	5.36517110200198	-0.448485096071663	0.104958851891488	0.356364734299273
Merged-chr6-97280699-4	chr6	97280616	97280816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27936.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	5.82589638420746	6.31636322268458	6.0383956268105	5.79958531119668	6.40614872337912	6.43087672737011	5.96371986598784	6.01226232646981	0.339378908182556	0.203732072605153	0.506742327845761
Merged-chr17-48265564-3	chr17	48265469	48265669	+	824.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033922, intron 2 of 5)	intron (NM_001033922, intron 2 of 5)	1274.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	3.43873675680816	3.35771567696981	3.5411176210873	3.41326443872095	3.31931331031509	3.31865167791394	3.0653818987512	3.43727803573575	-0.515781265259504	0.333353087583289	0.644131513179354
Merged-chr11-110970659-4	chr11	110970552	110970752	+	971.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010604, intron 1 of 1)	MIRb|SINE|MIR	2619.0	NM_001252207	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	5.26005741838153	4.9102374059746	4.9825183259655	5.26175491068984	5.03178710935782	4.97285162485159	4.81327232917286	4.75279422711629	-0.426465470446037	0.191173894772224	0.490557217491334
Merged-chr18-6490817-4	chr18	6490724	6490924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276350)	promoter-TSS (NM_001276350)	33.0	NM_027497	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	6.75649566988487	6.60189160905328	6.6406977344698	6.58403528008722	6.55610609561738	6.56423284156759	6.76432713249801	6.60495034681358	-0.0267511745572771	0.895566101125135	0.960919827429015
Merged-chr15-83510424-3	chr15	83510326	83510526	+	770.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357953, intron 1 of 11)	intron (NM_001357953, intron 1 of 11)	481.0	NM_178869	319953.0	Mm.235007	NM_178869	ENSMUSG00000022442	Ttll1	6330444E16Rik|AV014541	tubulin tyrosine ligase-like 1	protein-coding	3.38094805073808	3.49498975660176	3.26076294516522	3.38207432898796	3.48352027147864	3.49480427826648	3.42449130199608	3.54154757033864	0.349463969571287	0.482961447945501	0.757463266863053
Merged-chr9-121348235-4	chr9	121348142	121348342	+	774.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	-18716.0	NM_001357973	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	3.73447806586986	4.11755608435446	4.18434342691736	4.0523749275835	3.93870777025183	4.076315153655	3.98664253129639	4.09465777170545	-0.0363147577016667	0.932423172332509	0.975664181402534
Merged-chr8-80984097-4	chr8	80983985	80984185	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027554, intron 9 of 9)	intron (NM_027554, intron 9 of 9)	30821.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	5.31674686952905	6.1394884116333	5.4715554015827	5.24202979143082	6.07556291107687	5.55931989175924	5.55427400494047	5.13961290939065	0.0694561747927603	0.848464015710926	0.942768700327636
Merged-chr1-16225598-4	chr1	16225499	16225699	+	901.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119717.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	4.33303315183687	4.18250993618084	3.86057777326702	4.03597806047642	4.19072634120302	4.09318962925513	3.95393141505805	4.3697475431115	0.133352604479432	0.753046799085238	0.902733716697758
Merged-chr13-113486652-4	chr13	113486559	113486759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	16185.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	8.21060206836689	8.10803620769472	8.45815965002543	8.4620476041372	8.17557195779469	8.02811617139814	8.32870096404523	8.08868504849496	-0.205799534438468	0.232843783104717	0.542464407511367
Merged-chr10-62651337-4	chr10	62651231	62651431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053183)	promoter-TSS (NM_053183)	-113.0	NM_053183	94213.0	Mm.114116	NM_053183	ENSMUSG00000020076	Ddx50	4933429B04Rik|8430408E17Rik|GU2|RH-II	DEAD (Asp-Glu-Ala-Asp) box polypeptide 50	protein-coding	8.59058815982274	8.77806530806598	8.7127634311382	8.62734489224647	8.66175796365802	9.01273175747136	8.90897650026938	8.33197682219154	0.0933253649010596	0.612369539975207	0.83272620978202
Merged-chr10-42842503-3	chr10	42842398	42842598	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18014.0	NM_172938	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	3.43064740401589	3.40238879263039	3.37474832205198	3.37074532772	3.6057144330619	3.42828575068207	3.24338298348881	3.53482703007838	0.250212540762846	0.622403933299156	0.838356096591867
Merged-chr15-27630756-4	chr15	27630660	27630860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013792)	promoter-TSS (NM_001013792)	-67.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	8.3184988661867	8.47960294795148	8.35853509401189	8.30166529257152	8.56980654447941	8.64073826912842	8.42866805286351	8.38531360410351	0.184386105493689	0.231145291076391	0.54067337080271
Merged-chr6-120480568-3	chr6	120480485	120480685	+	976.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 12 of 12)	intron (NM_008359, intron 12 of 12)	13222.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	4.25033607958728	4.25669904495682	4.48804286640803	4.39507969119015	4.3131840379562	3.90645398515846	4.09592953245131	3.84389810451079	-0.718833293665858	0.0929567876314336	0.33357198730702
Merged-chr4-102658754-4	chr4	102658645	102658845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68902.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	5.70638377609856	5.39037105362469	5.68220733598114	5.02232180657242	5.89488788717789	5.93089764856611	5.96485471705348	5.79922448523013	0.74507107139487	0.0107624018710186	0.083299938004353
Merged-chr7-4528154-4	chr7	4528060	4528260	+	842.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033548, intron 4 of 11)	intron (NM_001033548, intron 4 of 11)	4282.0	NM_001033548	436022.0	Mm.425359	NM_001033548	ENSMUSG00000055809	Dnaaf3	6030429G01Rik|b2b1739Clo	dynein, axonemal assembly factor 3	protein-coding	4.10884621498934	3.8577912914822	3.8037202593544	3.81718416622249	4.41165300185582	4.08872143556189	4.09127357951103	4.15145411472417	0.81032118102831	0.0544337918868228	0.243534247246073
Merged-chr16-29527302-4	chr16	29527188	29527388	+	912.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164613, intron 2 of 21)	intron (NM_001164613, intron 2 of 21)	14195.0	NM_172613	224079.0	Mm.54954	NM_172613	ENSMUSG00000038094	Atp13a4	4631413J11Rik|4832416L12|9330174J19Rik	ATPase type 13A4	protein-coding	4.78099182973288	4.60372981105091	4.63007844981562	5.05196673947369	4.5779985914767	4.67879892735561	4.60876883549048	4.58623332294705	-0.401221516801121	0.262164034387719	0.574100843086496
Merged-chr2-48949329-4	chr2	48949220	48949420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177313)	promoter-TSS (NM_001177313)	-53.0	NR_149356	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	8.95000675602295	9.15512685285344	8.8898650319215	9.0927932820276	9.23362968691023	9.28781266147434	9.36746084157573	9.25044430616584	0.315313513062147	0.0277213418625175	0.158960556870389
Merged-chr2-127208245-4	chr2	127208117	127208317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198630)	promoter-TSS (NM_198630)	63.0	NM_198630	329509.0	Mm.120738	NM_198630	ENSMUSG00000044145	1810024B03Rik	-	RIKEN cDNA 1810024B03 gene	protein-coding	6.23765215757476	6.40782982564668	6.31589434865173	5.53750897994716	6.69429784313889	6.71376876865954	6.60937918468762	6.4358620263109	0.697099595699148	0.0107844277892678	0.0834012152990324
Merged-chr12-91764495-4	chr12	91764396	91764596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	21940.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	6.25144665566802	5.99251963279612	6.71224567772069	6.90696055961231	6.38148424074881	6.12011125610656	6.22049642343175	6.67968445174511	-0.233684274947424	0.417243077850572	0.711045418462121
Merged-chr6-29525320-2	chr6	29525220	29525420	+	975.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1305.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	2.92577297645709	3.15255509996893	3.22900914078085	2.79671335379862	3.05896515230038	3.10278615079974	3.10430054744	3.27994496759594	0.441413229422222	0.453493001308518	0.737566015133818
Merged-chr1-171397700-3	chr1	171397617	171397817	+	809.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005508, intron 2 of 11)	intron (NM_001005508, intron 2 of 11)	8757.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	3.70354871595023	3.23455265474929	3.51396373636229	3.31373936671569	3.45562325054975	3.46408459385702	3.15234040951942	3.28856821821943	-0.338306542538527	0.535398593760485	0.789712093691642
Merged-chr6-53287267-4	chr6	53287177	53287377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001327821)	promoter-TSS (NM_001327821)	-26.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	6.36844380060248	7.12088385902329	6.55274890476307	6.57098515127163	6.09602933939562	6.33349171087739	6.12361552745134	5.75718094267073	-0.886665776710803	0.000976950783307296	0.0131851307935211
Merged-chr13-8870623-2	chr13	8870535	8870735	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001039388, intron 1 of 13)	intron (NM_001039388, intron 1 of 13)	409.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	5.43963088921704	5.08107943130616	5.3248891503066	5.50251394088536	5.19039475817464	5.46897270953796	5.38557080105455	5.54259081003584	0.0687783909370296	0.816414493416126	0.929353855440939
Merged-chr5-122303551-4	chr5	122303430	122303630	+	912.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177242, intron 1 of 5)	intron (NM_177242, intron 1 of 5)	19132.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	3.98105128542568	4.51869446531889	4.53050081615999	4.55682250351231	4.13160013127564	3.92265442042285	4.35223447302716	4.56407015948774	-0.381492177423096	0.382447732693115	0.684509219878881
Merged-chr16-59639252-4	chr16	59639164	59639364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019665)	promoter-TSS (NM_019665)	75.0	NM_019665	56297.0	Mm.392505	NM_019665	ENSMUSG00000022722	Arl6	1110018H24Rik|2210411E14Rik|BBS3	ADP-ribosylation factor-like 6	protein-coding	8.21605335031508	8.22002177306484	8.3138711871085	8.31014101471215	8.14011879498896	8.16918477922703	8.37928436113918	8.09465883896717	-0.0866713404152195	0.580603173320775	0.815840553973051
Merged-chr18-39196743-4	chr18	39196627	39196827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 11 of 21)	intron (NM_001361073, intron 11 of 21)	203582.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	6.48956521515499	6.42129505663553	5.90192509699511	6.4733356583712	6.40229162560011	6.66586577277118	6.55078403716026	6.06655060539809	0.12881610570262	0.615538157178658	0.834477192020031
Merged-chr9-55541112-4	chr9	55541014	55541214	+	946.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027397)	promoter-TSS (NM_027397)	-35.0	NM_027397	104360.0	Mm.273996	NM_027397	ENSMUSG00000032318	Isl2	3110001N10Rik	insulin related protein 2 (islet 2)	protein-coding	4.54719236686697	4.45974574609591	4.54791933855386	4.28741711904409	4.48389517939184	4.67999224906597	4.52688943406936	4.83401332968938	0.407170292737852	0.262320641160831	0.574184848071147
Merged-chr8-83896047-3	chr8	83895915	83896115	+	821.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4083.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	3.40862647093391	3.4671362031315	3.35274692450899	3.36901443697967	3.58498380741387	3.06083252444672	3.39592982200636	3.51276376928916	0.0428740078734977	0.936487395413296	0.976993705562408
Merged-chr8-72350226-4	chr8	72350127	72350327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007944, intron 22 of 23)	intron (NM_007944, intron 22 of 23)	31165.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	6.02289105096826	5.7584501246405	6.04473472288021	6.34692149534192	5.75387501410098	5.72580010446228	6.03412809476958	5.91035959364152	-0.344705116643529	0.196292744279095	0.497277573899066
Merged-chr19-45075591-1	chr19	45075491	45075691	+	799.0	f0_balb.idr	promoter-TSS (NM_001362397)	promoter-TSS (NM_001362397)	350.0	NM_001362398	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	4.09773306630125	4.39071089126407	4.28812303816821	4.03626204891815	4.34812583111525	3.87485528811092	4.08097539684972	4.9001781325122	0.370963302149499	0.424405985455167	0.716123917662497
Merged-chr5-52783061-4	chr5	52782940	52783140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308144)	promoter-TSS (NM_001308144)	-15.0	NM_001308144	78796.0	Mm.266886	NM_030185	ENSMUSG00000029179	Zcchc4	4930449I23Rik	zinc finger, CCHC domain containing 4	protein-coding	6.60472079065968	6.27822170308174	6.21179931254405	6.45653699240844	6.68379448492128	6.70252947233041	6.82109115294295	6.45459394648416	0.396646454037065	0.0730787094306749	0.290937382323732
Merged-chr10-60259861-4	chr10	60259768	60259968	+	975.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17760.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	4.73254830082493	4.59748231692319	4.77201788213946	4.45095024148436	5.28275590476296	4.98304657100786	4.78661236697318	4.84282101559436	0.762732704755946	0.0274112830452298	0.157818305902807
Merged-chr4-59575337-3	chr4	59575267	59575467	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-6196.0	NM_001301367	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	4.83303878696988	4.58509823794675	4.38978309970672	5.12344593055614	4.49604205043252	4.25345874708972	4.54846956553824	5.01973569998322	-0.353194823665784	0.397110368337203	0.695612493933522
Merged-chr2-34963359-7	chr2	34963279	34963479	+	868.628601	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1607.0	NM_001326601	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	3.07197515320503	3.18268474049283	3.25221695667238	2.98345905984572	3.13255250589585	3.30721803394484	3.29347412320086	3.25042741188815	0.488016249695744	0.37130492060708	0.675366390102761
Merged-chr13-98957958-3	chr13	98957868	98958068	+	949.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26597.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	3.36799202060112	3.17430571805598	3.28418709110291	2.47595215708213	5.17842379369725	4.6673024582599	4.63971284494074	5.08683483978287	7.75099949450031	1.30856641739436e-20	4.85116921998506e-18
Merged-chr5-4583258-1	chr5	4583158	4583358	+	869.0	f0_balb.idr	Intergenic	Intergenic	174958.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	3.65593139199206	3.57990650546221	4.04885301084164	3.97494531422173	3.81548192389638	3.77430569133502	3.75124266910842	3.95907674902625	-0.0289967447137546	0.950661843792417	0.982320670382528
Merged-chr15-80220464-4	chr15	80220360	80220560	+	868.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13620.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	4.26890777099748	4.16447619544767	3.98900241625396	3.988835955938	4.13887580743462	4.39526988700338	4.11883765676274	4.18002329119606	0.280109113864439	0.489705040772599	0.761935283416117
Merged-chr2-124577100-4	chr2	124576985	124577185	+	958.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-33211.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.69192086964947	5.46242786634784	4.57602059819813	3.7694045218837	4.61366328171302	4.67060860435408	4.42708055881013	3.96754606674989	-0.717986860544957	0.342876034359058	0.6516462545027
Merged-chr18-62186214-3	chr18	62186123	62186323	+	905.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6123.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	4.425731123188	4.23138224765817	4.26755309982646	4.08909493870087	3.84098948767366	3.93821283855233	4.0683525131899	4.34667760973944	-0.497114550743974	0.24701245067231	0.558168726560377
Merged-chr4-149774287-4	chr4	149774173	149774373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027460)	promoter-TSS (NM_027460)	-6.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	8.52343699679469	8.68045832704171	8.45025006392699	8.23870470319144	8.56431342475342	8.5863629228122	8.6603566880581	8.44477957205341	0.111687470983216	0.50050805018084	0.768850577358824
Merged-chr2-93214976-2	chr2	93214876	93215076	+	786.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183180, intron 5 of 9)	intron (NM_183180, intron 5 of 9)	27428.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	2.97935505731992	2.92361919781335	3.09653780115235	2.3513382527624	2.99608858014899	3.26722738534497	2.90637865161239	2.70928105932032	0.452147925034726	0.537449223629578	0.791081068049335
Merged-chr3-108185908-3	chr3	108185778	108185978	+	826.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287093)	promoter-TSS (NM_001287093)	-411.0	NM_001287093	229715.0	Mm.275752	NM_146137	ENSMUSG00000050947	Amigo1	Amigo|ali2	adhesion molecule with Ig like domain 1	protein-coding	3.3871509235367	3.31355017766428	3.33030673940435	3.21454386900934	3.4921214633245	3.50277688359223	2.9921809891496	3.68365278660873	0.464940730659419	0.403573101772128	0.700922982752502
Merged-chr6-97442170-4	chr6	97442076	97442276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	URR1A|DNA|hAT-Charlie	17110.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	5.3518233000393	5.41812709684099	5.73246593114752	5.59117468692882	5.47427417720035	5.61975561767123	5.74899055414331	5.57948509273479	0.116799379862835	0.669044377357197	0.863357017638244
Merged-chr10-34131542-4	chr10	34131444	34131644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3572.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	7.19561443500509	7.46364845999238	7.39490091778463	7.38742166467346	7.44018889376734	7.20546826358558	7.13811059935175	6.97026507026394	-0.213007141215989	0.277033312745735	0.58917070028769
Merged-chr4-128666589-4	chr4	128666485	128666685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	11883.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	7.19446761796957	7.62482449130486	7.12816623859496	6.49338999386899	7.12464525930893	7.35048667632488	7.0452911198923	6.90939092556219	-0.0665843280910698	0.803177966051528	0.924024146497742
Merged-chr16-92826111-4	chr16	92826042	92826242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111021)	promoter-TSS (NM_001111021)	-68.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	7.28211523697468	7.35535888360555	7.16278123578587	7.38774437401864	7.20115747676534	7.31656921261341	6.9682140370482	7.19180188710183	-0.178280602939877	0.339856737962937	0.648946231981688
Merged-chr7-16311018-7	chr7	16310913	16311113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133234, intron 1 of 3)	intron (NM_133234, intron 1 of 3)	1430.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	4.6985402046501	4.63183193161412	4.88065981333837	4.75307809092176	4.9098314481257	4.66502875793791	4.78825899781683	4.61590441960559	0.0335018968173431	0.921211636716476	0.97081701888961
Merged-chr13-119836671-4	chr13	119836566	119836766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6449.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	6.67592279072588	6.42689710295841	5.99660438709434	6.05762383855876	6.71167404067923	6.73340024535737	6.57016540852744	6.25504647203582	0.403690913305906	0.118767181440779	0.381289772187003
Merged-chr12-105869469-3	chr12	105869369	105869569	+	868.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	84772.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	3.66733836804133	3.93165019673844	3.86757144325163	4.44270717345361	3.39011330103162	3.48315664671235	3.42029440023066	3.22315551648836	-2.09144814515735	0.000190832279364651	0.00349574168045248
Merged-chr6-21998329-4	chr6	21998201	21998401	+	948.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081351, intron 1 of 21)	intron (NM_001081351, intron 1 of 21)	12391.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	4.26672850100444	4.94743983393602	4.41982222469708	4.49749508632071	5.11098443286683	4.77492572124642	4.73439031140648	4.92681212011638	0.71051243676533	0.0577424460621368	0.252243130493239
Merged-chr19-5488024-3	chr19	5487929	5488129	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153768, exon 1 of 16)	non-coding (NR_153768, exon 1 of 16)	350.0	NM_027877	71711.0	Mm.27697	NM_027877	ENSMUSG00000024906	Mus81	1200008A18Rik|AI182501|AW045863	MUS81 structure-specific endonuclease subunit	protein-coding	5.83856330807285	5.68701319896645	5.49869801353538	5.48095769445097	5.96548644725113	5.89452603529543	5.55773976868722	6.17521316640377	0.481222034481319	0.0796834233706023	0.305690761673822
Merged-chr7-75612188-2	chr7	75612088	75612288	+	851.25	f0_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 7 of 36)	intron (NM_029332, intron 7 of 36)	156654.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	3.06919950471856	2.95731805822776	2.95225449230194	3.53287138515389	2.66636972162848	2.78617744060112	2.67404679816428	2.95077844405038	-1.79403559589673	0.00994275290020387	0.078582634763892
Merged-chr10-108185437-4	chr10	108185335	108185535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027892, intron 1 of 25)	intron (NM_027892, intron 1 of 25)	23035.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	6.02526299225313	6.05337859661804	6.6448904018855	6.78670214723741	6.26172094743279	6.29479492440291	6.53729021717443	6.40380214208242	-0.0907765021751057	0.739140219920028	0.897175752194117
Merged-chr11-115692980-4	chr11	115692882	115693082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	6552.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	7.65085542630552	7.76751141913672	7.82117167113425	7.67466562391455	7.62623226682984	7.74044914671714	8.02789904849582	7.94447009185649	0.146498024514615	0.408185788796287	0.704226101285379
Merged-chr3-60469018-2	chr3	60468918	60469118	+	828.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3812.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	3.30573538693314	3.51008065296114	3.62343985447207	2.7246792278497	3.41831034194432	3.48184601834663	3.29347421354879	3.30439900691085	0.131704296750957	0.834127438572312	0.93671749817143
Merged-chr17-71183451-4	chr17	71183325	71183525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022882)	promoter-TSS (NM_022882)	-107.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	7.27357008259122	6.93764901207614	7.00408231224857	7.06200967043039	7.17542407301531	7.07616160620059	6.93052866758644	6.97371221982523	-0.0346743106585363	0.858548274807029	0.946576014812915
Merged-chr1-58697836-2	chr1	58697732	58697932	+	603.833374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-1843.0	NM_175370	108812.0	Mm.442063	NM_175370	ENSMUSG00000047528	Als2cr12	4933405P16Rik|4933425F06Rik	amyotrophic lateral sclerosis 2 chromosome region 12	protein-coding	3.19574641111226	3.18406209871842	3.25233340824553	3.45484183442636	3.10277169227127	2.97775334546156	3.12646179278961	3.19450652929077	-0.714411629517836	0.207694028421736	0.511718150926314
Merged-chr4-132610760-4	chr4	132610669	132610869	+	966.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28277.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	5.28169247802418	5.13096955679743	4.94785228965662	4.66465145166629	4.88368834214136	5.08638863607561	4.69770884463954	4.75736576267688	-0.294558947166338	0.40432745172162	0.701411705444497
Merged-chr5-68033586-4	chr5	68033460	68033660	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001018019, intron 1 of 3)	intron (NM_001018019, intron 1 of 3)	1725.0	NM_001018019	433899.0	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding	4.26537896763893	4.42804198752991	5.1723157522906	5.0747829950338	5.12344478890149	4.40078954986796	5.31126170464332	5.63320989898454	0.765968223457098	0.276752455718473	0.588766903149775
Merged-chr12-3807615-5	chr12	3807467	3807667	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	407.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	3.55251595257098	3.3250978677783	3.74882285793114	3.71513469888789	3.39295091357286	3.36924036574101	3.58995978802597	3.44071306979328	-0.49997685633884	0.330003599452945	0.641399328421746
Merged-chr14-105897379-4	chr14	105897273	105897473	+	934.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011897)	promoter-TSS (NM_011897)	-554.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	5.70788591795117	5.17097623293811	5.37358423015394	5.85757813965785	4.83004491346605	4.88807469566986	4.76997551858112	4.70035998790554	-1.45335118133656	1.62057443639802e-05	0.000424396128801966
Merged-chr1-150143700-4	chr1	150143599	150143799	+	937.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	21249.0	NR_110420	102639566.0	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	4.4091439652294	4.49344594037556	4.66202689924297	4.62883328671908	4.70886012626111	4.87063229013587	4.87999653379072	4.20757513907651	0.295567013020337	0.435892927250668	0.724865609157659
Merged-chr17-44614209-3	chr17	44614102	44614302	+	960.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271627, intron 6 of 7)	intron (NM_001271627, intron 6 of 7)	121974.0	NR_073425	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	3.87678846497287	4.24836200640991	3.93152054874431	4.45835528186123	3.51367382651188	4.10788487921472	4.39184049040072	4.03124963480677	-0.290476468160339	0.565382840313378	0.807532561265495
Merged-chr19-6408938-4	chr19	6408852	6409052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011242, exon 12 of 17)	exon (NM_011242, exon 12 of 17)	8369.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	6.76314271425676	6.27408419735665	6.85761287813858	6.78906367811803	6.68869597799146	6.310189040805	6.88509884235769	6.31639659513011	-0.160838122959183	0.522156102259898	0.781877547128585
Merged-chr12-40447363-3	chr12	40447279	40447479	+	937.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	1326.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	3.85060185440324	3.87233759847167	3.50399417642417	3.6752451292361	4.15964397727292	3.91974463172581	3.93192273338532	4.0374761651644	0.816887081455528	0.0669163739542725	0.275926345828476
Merged-chr2-68350869-4	chr2	68350762	68350962	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 10 of 17)	intron (NM_016866, intron 10 of 17)	121119.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	5.31890358569801	4.99178371723095	5.47966021137043	5.47166687662613	5.2299062438043	4.75553864090283	5.32105393385581	4.79774715318026	-0.508887853557191	0.134220596076097	0.407843993309753
Merged-chr15-59650628-4	chr15	59650534	59650734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144549, intron 1 of 2)	intron (NM_144549, intron 1 of 2)	1980.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	6.81585368917169	6.6295746247393	6.54985143426296	6.71472398378593	6.41093457037031	6.69309320867943	6.84724653658541	6.52853882852857	-0.0863631195947404	0.689964520528368	0.873658844158623
Merged-chr5-114689840-4	chr5	114689746	114689946	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019821, intron 1 of 4)	intron (NM_019821, intron 1 of 4)	1089.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	3.99166808899269	4.07868406356394	4.61452525070715	4.26583948320669	4.47424199097743	4.27969923704938	4.32097927085117	4.67967557748432	0.45072839321609	0.272954784215037	0.58439056083866
Merged-chr11-104425254-4	chr11	104425164	104425364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081045, exon 2 of 14)	5' UTR (NM_001081045, exon 2 of 14)	17027.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	7.3863538804565	7.54938280639265	7.27435201129951	7.45222254303329	7.28459102569875	7.18959128626676	7.48121870663295	7.23660747684155	-0.161318047316485	0.377390818334227	0.680041038409456
Merged-chr5-139830856-4	chr5	139830751	139830951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3957.0	NM_025604	66506.0	Mm.29070	NM_025604	ENSMUSG00000029551	Psmg3	1810042K04Rik|4930403H09Rik|AI303239	proteasome (prosome, macropain) assembly chaperone 3	protein-coding	5.45691953033953	5.30897452425134	5.51412769731075	5.5181939712188	5.7030953042544	5.63262488918286	5.48650157474527	5.61569449564792	0.273677628385458	0.305578476493441	0.617941664868378
Merged-chr9-44513280-4	chr9	44513184	44513384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007551, exon 2 of 2)	exon (NM_007551, exon 2 of 2)	13137.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	5.93582157556225	6.39534188041919	5.76546814407483	5.59566107838854	6.16139385871607	6.39672069169036	6.0766460622308	5.73493367611598	0.250519969441524	0.398954991542386	0.697026434595773
Merged-chr9-41122520-4	chr9	41122425	41122625	+	971.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	ID4|SINE|ID	35537.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	4.71651265804379	5.11198934157617	5.22108278705925	5.46824008979182	5.10422239806139	5.09653129055032	5.19515831819578	4.79926325945279	-0.222434001211827	0.518648626244115	0.779675989312394
Merged-chr12-3572375-7	chr12	3572262	3572462	+	968.514282	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_149729)	promoter-TSS (NR_149729)	-29.0	NM_001162465	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	3.82403916424214	4.02744907251113	4.03140243830725	3.42277062990833	4.35301672578408	4.37916116129752	3.96544198306095	3.9297159838153	0.905128042938468	0.0576619400610552	0.252068780036244
Merged-chr7-122383471-4	chr7	122383374	122383574	+	919.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	MTEa|LTR|ERVL-MaLR	94349.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	4.61401783696936	4.71022814070663	4.3950478418908	4.84681764295599	4.50036619186512	4.57304056672017	4.67105556933387	4.9921457160329	0.0569162741741751	0.877984890666958	0.954314763971155
Merged-chr8-108722878-3	chr8	108722786	108722986	+	784.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	8242.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	3.77547741618761	3.80759754402374	3.63115618031353	3.47722290757918	3.34948016544714	3.46039116292693	3.39614392053109	3.52257137023565	-0.805028227890767	0.112541408692855	0.370953776743532
Merged-chr2-59960322-4	chr2	59960221	59960421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 9 of 35)	intron (NM_001001182, intron 9 of 35)	-77715.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	5.70411506968208	5.59343942002333	5.70511182555245	6.02678781210417	5.66369488493662	5.47214082050551	5.818222670385	5.84384847964866	-0.128654295665686	0.639220966748591	0.847519962600316
Merged-chr2-132151143-4	chr2	132151040	132151240	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5820.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	4.32066115545927	4.94844694039053	4.32129756623135	4.43500093910814	4.8823816862564	4.50128851348512	4.57045894577482	5.00128177645172	0.480142824465133	0.223756948472781	0.531850525457293
Merged-chr8-46845154-4	chr8	46845037	46845237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 7 of 7)	intron (NR_152560, intron 7 of 7)	105392.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	6.83038424191067	6.29493234242696	7.14404231779549	7.06302474173253	6.5895132173231	6.47497176304805	6.93810049091752	6.91878209982475	-0.186139392392654	0.471278698367896	0.749763001969747
Merged-chr12-32208694-4	chr12	32208599	32208799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146201)	promoter-TSS (NM_001146201)	-50.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	7.10406052179075	7.0403152820537	6.94073478479688	7.21326410924949	6.96509147176692	7.18387464690625	7.20389787104342	7.56924088032723	0.215452538584652	0.305556603227602	0.617941664868378
Merged-chr14-25475001-4	chr14	25474912	25475112	+	929.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	15827.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	4.88694127401068	4.40035231041141	5.01099872082739	4.6439374341308	4.23839898231741	4.55510016269077	4.65444215182392	4.67349917856294	-0.465787374593308	0.22705539157443	0.535725428645169
Merged-chr3-96262382-4	chr3	96262299	96262499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_033596)	TTS (NM_033596)	918.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	6.24155934492245	6.16934733291325	6.22268116913289	6.3651029898547	6.42815213221272	6.03247219051559	6.94857770469491	6.62710978110848	0.435978810322053	0.0927939752347255	0.333332443261798
Merged-chr19-32903918-4	chr19	32903820	32904020	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146343.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	5.59826819939555	5.33507486267157	5.22493857667568	5.44186862244072	5.06369983873386	4.87657335106785	5.13579302710455	5.09033303797666	-0.669149756123863	0.026257804909023	0.153527540719898
Merged-chr6-112752729-2	chr6	112752636	112752836	+	670.125	f0_balb.idr|f0_c57.idr	intron (NM_080448, intron 12 of 21)	intron (NM_080448, intron 12 of 21)	-56066.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	4.04301136240843	4.08465418434161	3.99441111282504	4.15575116675106	3.9751984342853	4.21458469457529	4.11862531629865	4.08857310027925	0.0449149103483451	0.912544528439917	0.967239583492046
Merged-chr3-109025748-4	chr3	109025651	109025851	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163567, intron 1 of 10)	intron (NM_001163567, intron 1 of 10)	1856.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	5.05488949028966	4.91433785511112	4.75879325075566	4.50750188000738	5.03684467198526	5.12760236079005	5.29646894065408	5.37212538637278	0.79023327373748	0.0175562521322178	0.117161623172463
Merged-chr4-6209752-4	chr4	6209644	6209844	+	960.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026534, intron 6 of 7)	L3|LINE|CR1	18639.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	5.0400785220021	4.57708192373055	4.70122784069554	4.67373153281012	5.11625282676838	5.39671688322691	5.08025716054695	5.25038998775827	0.901966206031873	0.00531166148983981	0.0497379532157055
Merged-chr18-39637078-2	chr18	39636978	39637178	+	778.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136419.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	3.32912771551725	3.31893005255317	3.22499780169746	2.73442253050763	3.02010093098834	2.95835700553684	2.84055640785725	3.16749825271259	-0.675217742440292	0.293483708736602	0.606008746948365
Merged-chr3-59127146-4	chr3	59127052	59127252	+	738.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287119, intron 1 of 2)	Charlie1|DNA|hAT-Charlie	3610.0	NM_001287124	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	4.546891446268	4.09513430843974	4.27291175364751	4.42216462537906	4.02760787646962	3.64983086779023	4.33749631038416	4.47210516573583	-0.460715977515116	0.320387902574761	0.632292414599742
Merged-chr19-43525254-1	chr19	43525154	43525354	+	811.166687	f0_balb.idr	promoter-TSS (NM_010324)	promoter-TSS (NM_010324)	-649.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	4.41877771303259	4.59260340949545	4.64703473204521	4.72266218532714	4.96876659213675	4.73877767057962	5.18520694810298	5.09633439588289	0.80728879286951	0.0184137504194342	0.121194317174071
Merged-chr5-105685085-4	chr5	105684990	105685190	+	973.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14879.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	5.10442747346557	5.18486248461592	5.03952646494988	4.97642092356438	5.20136493011635	5.27760942312273	4.62754437912937	4.93073989646211	-0.0669372633517478	0.840457183908065	0.939305852792169
Merged-chr5-33658554-4	chr5	33658518	33658718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356983)	promoter-TSS (NM_001356983)	490.0	NM_001040435	21335.0	Mm.379024	NM_011524	ENSMUSG00000037313	Tacc3	Aint|C86661|Eric1	transforming, acidic coiled-coil containing protein 3	protein-coding	7.41842656079424	7.16439349946342	6.98213853114168	7.11205647573763	7.18712594226811	7.2716476702987	6.9979947098615	7.12515400374474	-0.0351061755101702	0.857450262697323	0.946298254907789
Merged-chr10-43703250-5	chr10	43703153	43703353	+	973.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	-42905.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	4.38868117572106	4.58348240750298	4.68708729677893	4.60025796168592	4.99752486692275	4.61279113203492	4.70210824186119	4.64551995638189	0.404761570995808	0.252668323331165	0.563959817697992
Merged-chr13-21234180-1	chr13	21234080	21234280	+	789.0	f0_balb.idr	Intergenic	Intergenic	54249.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	2.85441095234056	2.64629600367183	2.85481480242498	3.12525533029164	2.4244430306511	2.40677291878748	2.60036651647401	2.53773452478173	-2.21691628135752	0.0040468513882262	0.0404281873631653
Merged-chr9-44113604-4	chr9	44113491	44113691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153762)	promoter-TSS (NM_153762)	-540.0	NM_153762	213211.0	Mm.392032	NM_153762	ENSMUSG00000053128	Rnf26	8030450I18Rik	ring finger protein 26	protein-coding	8.09710585826664	8.07595887726843	7.69359331795482	7.66449129720727	8.12238272982115	8.23198848687079	7.76211657542106	7.69685673456703	0.104376125459497	0.614736856690847	0.834093272768538
Merged-chr5-113667569-4	chr5	113667474	113667674	+	842.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17184.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	3.84830953862628	3.74733315198812	3.94597666885946	3.7985176350688	3.89395164863104	3.86255436891818	3.88191824432198	3.94359949123109	0.182608926650475	0.672603083543039	0.865267714888623
Merged-chr11-111327086-4	chr11	111326998	111327198	+	711.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	260934.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	3.60061657103416	3.42220085658785	3.75757277977923	3.65982772475675	3.48488828877059	3.71864613231936	3.83495482154318	3.80341958789331	0.292467650372835	0.543977975308552	0.795027379566929
Merged-chr3-115689609-4	chr3	115689509	115689709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25446.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	7.32434258041039	7.62496932271379	7.81883463978444	7.61415277811768	7.56390626506286	7.43711609925518	7.41970524723375	7.26665684129571	-0.236345487341415	0.212722731365153	0.517670706102327
Merged-chr15-80011985-3	chr15	80011959	80012159	+	970.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011057, intron 1 of 6)	intron (NM_011057, intron 1 of 6)	2749.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	4.18755627593858	3.85806095150572	3.78461127490226	4.01916365702991	3.75154719425294	3.84987735768696	3.54228336931215	3.78248561441382	-0.687991898433188	0.137277333048076	0.412063563826973
Merged-chr17-50571230-4	chr17	50571132	50571332	+	798.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	MTD|LTR|ERVL-MaLR	61685.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	3.91683010036535	4.11183159719981	3.97089010029361	4.06434437630104	4.6063902518556	4.09392805653969	4.1470425121614	4.11696764435978	0.635294286376541	0.135101662576796	0.409225977299195
Merged-chr5-17876858-4	chr5	17876767	17876967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	L2|LINE|L2	12092.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	7.46022107913099	7.63120995482571	8.00154030573731	7.908806064854	6.83013059960224	7.24022394737002	6.64431170509202	6.75680208798693	-1.19767759432452	6.4722915210748e-08	2.89015833236251e-06
Merged-chr15-84184181-4	chr15	84184065	84184265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054088, intron 7 of 7)	intron (NM_054088, intron 7 of 7)	-8068.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	5.27677789177757	5.2948390063508	5.77987235379844	5.62498531129469	5.63515945237771	5.67315442230791	6.01700915966447	5.65506541296387	0.393491483354531	0.17087646282719	0.464014859975631
Merged-chr10-67205113-4	chr10	67205002	67205202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 3 of 25)	intron (NM_207221, intron 3 of 25)	19352.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	6.46681691284635	6.49178308238252	6.74552139842305	6.61252228801673	6.46428670770513	6.2908836421649	6.71117194953198	6.64001542085115	-0.0700311940163988	0.749284061466772	0.901235090931483
Merged-chr8-3676495-4	chr8	3676421	3676621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025701)	promoter-TSS (NM_025701)	44.0	NM_025701	66682.0	Mm.29090	NM_025701	ENSMUSG00000040236	Trappc5	4021401A16Rik|TRS31	trafficking protein particle complex 5	protein-coding	7.02679900324944	7.17367492057478	7.38819383941098	7.21794182462129	7.48806559579956	7.42023713884442	7.50713784394214	7.35337985041922	0.319035899423127	0.0785488471848395	0.303250441707962
Merged-chr3-142499243-4	chr3	142499153	142499353	+	848.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153564, intron 1 of 10)	intron (NM_153564, intron 1 of 10)	2319.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	3.63948199129542	3.78449703968718	3.13883648206646	3.08018968742867	3.95133807526133	3.86224573992016	3.45971769015992	3.58460565374997	0.892789581410021	0.121198253873435	0.385433406865215
Merged-chr12-111675899-4	chr12	111675786	111675986	+	958.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2219.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	4.46492032674872	4.35988450638638	4.70991684387921	4.42432735608458	4.83622545805513	4.76700169311202	4.53145561478736	4.91125511071706	0.613300884418861	0.0829768479286541	0.31294489793428
Merged-chr6-31471556-3	chr6	31471446	31471646	+	589.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 10 of 17)	ORR1F|LTR|ERVL-MaLR	72718.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	3.24689934744128	3.13124628051529	3.24733697279375	3.28247569881953	3.06313990171119	3.11270883630513	2.99508255136826	3.35158662855798	-0.368937059611992	0.510348650012274	0.774681535183884
Merged-chr13-111980442-4	chr13	111980339	111980539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112503.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	7.79348429685637	7.65643938036915	7.97322894315145	7.92969323131218	6.75307896716295	6.59584780500531	7.02709594636514	6.78961113662273	-1.41061735899765	4.88059058306401e-13	5.57617266632285e-11
Merged-chr11-51762201-4	chr11	51762098	51762298	+	805.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1465.0	NM_025535	66397.0	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	3.5045748372898	3.49037210804345	3.50501578873281	3.40978949047205	4.23182143446627	3.95147914477769	3.66224608308633	3.77840765880916	1.38942638864353	0.00358920685379674	0.0367856234192078
Merged-chr9-41207960-3	chr9	41207847	41208047	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040392, intron 1 of 4)	intron (NR_040392, intron 1 of 4)	1792.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	4.75244942127632	4.5708842239698	4.18341674290763	3.99034638707626	4.77855151425306	4.92475945879203	4.89434889456338	4.47444806944242	0.837134805984794	0.0400368381538585	0.201897421392383
Merged-chr6-38901372-4	chr6	38901277	38901477	+	960.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17609.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	5.21455524076332	5.1549326576109	5.27366047860966	5.17849948214982	4.59945560878741	5.01419136053378	5.03233290539064	5.1508558825778	-0.485578694020246	0.132901462247236	0.406034560103701
Merged-chr4-128820664-3	chr4	128820565	128820765	+	741.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Zaphod3|DNA|hAT-Tip100	-14553.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	3.33183361344997	3.64504802290775	3.66537087634773	3.47078903002852	3.9185542368612	3.44546118203448	3.38199702652715	3.39231810929197	0.113067962605577	0.832219580878543	0.935753947395642
Merged-chr8-13757668-4	chr8	13757560	13757760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357247)	promoter-TSS (NM_001357247)	4.0	NM_001357247	69957.0	Mm.182412	NM_027276	ENSMUSG00000038416	Cdc16	2700071J12Rik|2810431D22Rik|APC6	CDC16 cell division cycle 16	protein-coding	5.73368756572516	5.52841852253824	5.28834878247915	5.12199074798236	5.91099314100001	5.70620814614724	5.72856008987708	5.52709749940022	0.529155892777569	0.0717714378763654	0.287825746611179
Merged-chr7-92876232-4	chr7	92876148	92876348	+	733.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	MIRc|SINE|MIR	995.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	3.46312410766464	3.35295921584013	4.10692063279888	3.57949073666051	3.82949654189906	3.76212951724612	3.73440941652439	3.93865403212733	0.48766091196943	0.338539323724098	0.648064797414472
Merged-chr10-80656593-4	chr10	80656505	80656705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145361, exon 1 of 9)	5' UTR (NM_145361, exon 1 of 9)	466.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	6.95980008389024	6.73366287056005	6.46890767542606	6.38767642539646	6.54194311221267	6.94301854834615	6.67584309964442	6.59852392660448	0.0673102389988447	0.775188806403644	0.912275582411669
Merged-chr5-135118635-4	chr5	135118535	135118735	+	865.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152882, intron 2 of 16)	intron (NR_152882, intron 2 of 16)	11744.0	NR_152882	58805.0	Mm.34213	NM_021455	ENSMUSG00000005373	Mlxipl	ChREBP|Mlx|WS-bHLH|Wbscr14|bHLHd14	MLX interacting protein-like	protein-coding	3.90483938094253	3.79444249232225	3.57020465946592	3.51702656799821	4.1461674333129	3.8691868451626	4.06998296390787	4.12814027436763	1.04196491607377	0.0199011502743126	0.12765107464858
Merged-chr5-45534494-2	chr5	45534394	45534594	+	772.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_021416, intron 12 of 15)	intron (NM_021416, intron 12 of 15)	14265.0	NM_025895	66999.0	Mm.283045	NM_025895	ENSMUSG00000015804	Med28	1500003D12Rik|AI451633|AU045690|Eg1|FKSG20|magicin	mediator complex subunit 28	protein-coding	2.74237558468109	2.9151457575081	3.18589292149338	2.98391760437339	3.01996215895166	3.18446864941683	3.17271395402681	3.01233954710346	0.534346607865956	0.367800598727549	0.67234266826309
Merged-chr1-172357683-4	chr1	172357541	172357741	+	804.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	16431.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	3.81033304185649	3.66674550420561	3.95402569105538	3.90145467486021	3.88349620374104	3.82383513435141	3.57845154389798	3.85813196091444	-0.13113781055855	0.774095419027346	0.911716359199097
Merged-chr6-30693807-4	chr6	30693719	30693919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031998)	promoter-TSS (NM_031998)	-70.0	NR_130775	83922.0	Mm.65389	NM_031998	ENSMUSG00000029790	Cep41	1700017E11Rik|2810431D15Rik|Tsga14	centrosomal protein 41	protein-coding	6.59474556327036	6.48874046875181	6.35648750642856	6.25351379792227	6.60155690758113	6.88992769237184	6.39674911820139	6.76524980152219	0.367928394212825	0.103960368360731	0.354362372356501
Merged-chr10-56377265-3	chr10	56377156	56377356	+	987.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010288)	promoter-TSS (NM_010288)	-44.0	NM_010288	14609.0	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	4.36763702367005	4.27745850512659	4.51371626164579	4.43197481331943	3.99238403552936	3.85391948191782	3.65587857250821	3.85036786192983	-1.46434576546663	0.000874738166049256	0.0120968929881013
Merged-chr9-47528661-4	chr9	47528558	47528758	+	860.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1512.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	4.31751758346657	4.24596296367725	4.08825584374183	4.3815734338155	3.97663720088777	4.05104147953865	4.5262102124856	4.27271050520145	-0.124305943989914	0.766087720476404	0.908503528989431
Merged-chr11-20216588-2	chr11	20216488	20216688	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 2 of 5)	B2_Mm2|SINE|B2	15176.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	3.44035873432042	3.55616872917769	3.17920839877389	3.18181721721042	3.59724647158405	4.09593585060404	3.48507673628566	3.60617193189559	1.1938810732086	0.0243663527005796	0.14584364437223
Merged-chr8-119438354-3	chr8	119438162	119438362	+	915.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027950, intron 1 of 5)	intron (NM_027950, intron 1 of 5)	1100.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	4.13213710668273	3.75857227496045	3.77449428859875	3.30899899318126	3.87655275209467	3.53881085421752	3.65224225809054	4.00744504146744	0.0437029576051957	0.934059321716189	0.976260486007208
Merged-chr11-97659667-4	chr11	97659575	97659775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3737.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	8.03268382955487	8.12335054844798	7.66392508037561	7.37089222105952	7.99592821555874	7.90858373170215	7.83918467701279	7.70931882032946	0.05779422400503	0.788363209383247	0.91809533353005
Merged-chr18-67464916-4	chr18	67464805	67465005	+	906.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144867)	promoter-TSS (NM_144867)	56.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	4.61547514076322	4.08409162251081	4.38679605933523	4.56186381605349	4.33437474492169	4.33351026225195	4.28102823641843	4.15533214353449	-0.366070440792043	0.359377906181618	0.665266442591906
Merged-chr9-120116233-4	chr9	120116137	120116337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144793, intron 1 of 6)	intron (NM_144793, intron 1 of 6)	5838.0	NM_144793	208638.0	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	6.61700844924218	6.90341319096273	6.24662134453437	6.50454050392687	7.06323392639422	6.91750150019791	7.08084008165854	6.76494344341162	0.531729741839127	0.0188693105195513	0.123039451582186
Merged-chr6-52221780-4	chr6	52221644	52221844	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3171.0	NM_010455	15404.0	Mm.294826	NM_010455	ENSMUSG00000038236	Hoxa7	AV118143|Hox-1.1|M6	homeobox A7	protein-coding	4.76006785414215	4.90955988832448	4.68321739049158	4.95918027783006	4.92977771923262	4.81662557967516	4.58051149502244	4.63975117111553	-0.179920476529948	0.599789752820593	0.826560500894977
Merged-chr4-55509270-1	chr4	55509170	55509370	+	737.0	f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	23205.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	3.3029601803293	3.39377470261722	3.0940156807645	3.17555467105167	2.59010219875807	2.72738301117155	2.69210251242775	2.84250462187979	-2.74479091143877	0.000188531042480606	0.00346371360005172
Merged-chr19-44408373-4	chr19	44408299	44408499	+	900.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009127)	promoter-TSS (NM_009127)	-690.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	3.81099995581915	4.18980605647934	4.34080865190665	4.15709160119053	4.24052271343553	4.15325174680558	4.19785292656466	4.027436448185	0.0520170662392858	0.900978475687064	0.963325736633273
Merged-chr6-83013705-3	chr6	83013618	83013818	+	810.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 7 of 9)	intron (NM_033079, intron 7 of 9)	19753.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	3.54321896782447	3.4432224459461	3.64178544607952	4.22347819136775	2.88629201746428	2.93271617471612	2.97380471810358	3.19435823313314	-3.17333907090642	8.14868390440622e-06	0.000229708978864052
Merged-chr7-4532537-4	chr7	4532436	4532636	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033548)	promoter-TSS (NM_001033548)	-94.0	NM_001033548	436022.0	Mm.425359	NM_001033548	ENSMUSG00000055809	Dnaaf3	6030429G01Rik|b2b1739Clo	dynein, axonemal assembly factor 3	protein-coding	4.77202199418082	5.54749099854925	4.77277892922701	5.1848462419643	5.75296817903514	5.42296284893713	5.3386351987036	4.8550055160797	0.49040956093364	0.194874086080453	0.495582775979294
Merged-chr17-46383593-4	chr17	46383490	46383690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207671)	promoter-TSS (NM_207671)	-176.0	NM_207671	57908.0	Mm.439916	NM_021346	ENSMUSG00000015597	Zfp318	2610034E08Rik|D530032D06Rik|TZF|Znf318	zinc finger protein 318	protein-coding	8.33901784356507	8.43713974000094	8.16027561312673	8.1974792314616	8.27695065134819	8.45141370638316	8.39491308875969	8.15488470538178	0.0462006335633275	0.776927422527571	0.913015118902433
Merged-chr1-9773341-4	chr1	9773287	9773487	+	883.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24743.0	NM_133220	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	3.52882464490114	3.60739607833743	3.84615406349002	3.96503090075735	3.7264406757183	3.8151764518903	3.62971527392373	3.64178967859092	-0.171677207837279	0.72155077119194	0.888783829001335
Merged-chr2-102946232-3	chr2	102946135	102946335	+	738.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44570.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.44449357352664	3.74666453964946	3.38625833978785	3.53362171957715	3.56883586465294	3.43724177499422	3.54067941013198	3.49918909746756	-0.0754523591137276	0.879415631262573	0.954842749021429
Merged-chr7-138846666-4	chr7	138846608	138846808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027115)	promoter-TSS (NM_027115)	322.0	NM_026391	52432.0	Mm.258739	NM_026391	ENSMUSG00000041769	Ppp2r2d	1300017E19Rik|D7Ertd753e|MDS026	protein phosphatase 2, regulatory subunit B, delta	protein-coding	5.33568914927695	4.95430827920185	5.41575775880543	4.94527249415423	5.02441689998204	5.16977475841069	4.69536781462402	5.18881001964125	-0.255056160598441	0.45078665599864	0.735516097245953
Merged-chr2-156850678-4	chr2	156850579	156850779	+	915.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291124, intron 2 of 3)	intron (NM_001291124, intron 2 of 3)	10672.0	NM_173396	228839.0	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	4.48237486609748	4.52571696733723	4.1625472583492	4.59547855097975	4.2932752114032	4.39006221205853	4.6825608929478	4.35260269752288	-0.0656032315566334	0.865763347884403	0.949727926552738
Merged-chr13-4756577-4	chr13	4756480	4756680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-147416.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	6.74577314315809	6.64405065308971	6.71779756951971	6.80408182494867	6.78783861912195	6.77059588352377	6.65393925974239	6.75648531698386	0.0151834155605972	0.938497783908091	0.977714035489638
Merged-chr1-80722851-4	chr1	80722759	80722959	+	954.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	35694.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	4.51541100629976	4.82005243367008	4.6826185376115	4.62019780875301	4.76147579727363	4.77615532926358	4.73588921269335	4.79149173418567	0.217599993367997	0.516909162700153	0.778586893307058
Merged-chr5-9161722-4	chr5	9161628	9161828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011806)	promoter-TSS (NM_011806)	48.0	NR_152860	23857.0	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	8.24162401970193	8.30829249292873	8.62524221271164	8.40888604191429	8.49234325443835	8.55625493483399	8.56358395123662	8.22557103678002	0.0795981107640654	0.638935473080748	0.847409779354821
Merged-chr1-151581823-4	chr1	151581716	151581916	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	HAL1M8|LINE|L1	10443.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	4.59639809851239	4.39542757778164	4.48965771454391	4.49879277144372	4.1333454961515	4.16283519419973	4.17385909585696	4.09035491668878	-0.882681735518657	0.0225280794400439	0.13865336502057
Merged-chr10-44686850-4	chr10	44686764	44686964	+	881.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-228116.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.59756333545934	4.44444773611123	4.75972015016893	5.06566013046452	4.8136705730237	4.68749321821435	5.06588037350425	4.8301675967204	0.198844952673422	0.589932265271302	0.820631189012546
Merged-chr8-122428362-3	chr8	122428228	122428428	+	729.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301284, intron 1 of 4)	intron (NM_001301284, intron 1 of 4)	4612.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	3.34253001675298	3.33556237852815	3.40191582288679	3.65334329299004	3.52965256240142	3.18684258982776	3.44497655776527	3.79291532561078	0.189948497668303	0.727190902517413	0.891411863229548
Merged-chr6-13690575-4	chr6	13690477	13690677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12611.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	5.27910313621961	5.72507613225233	5.28000620689066	5.45927328159014	5.43633969176605	5.51492057081633	5.25387679214186	4.74610266404496	-0.318240887232482	0.334859190335306	0.645239354575747
Merged-chr11-61579660-4	chr11	61579493	61579693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010148)	promoter-TSS (NM_010148)	94.0	NM_010148	13855.0	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	5.22243150451328	5.52005988259907	5.75017086324281	5.2256320858045	5.51406678670551	5.80444308957994	5.29606693955349	5.65203590435443	0.240460765682046	0.424411531598795	0.716123917662497
Merged-chr9-120068335-3	chr9	120068282	120068482	+	992.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009987)	promoter-TSS (NM_009987)	-86.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	4.01946938966782	4.09198706304166	4.2917765158891	4.2809345187701	3.36608055337295	3.32326081471887	3.27334614687688	3.48979190624321	-2.73324868828195	7.28250200367085e-07	2.61666436203578e-05
Merged-chr10-94828383-6	chr10	94828305	94828505	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 20 of 30)	intron (NM_018797, intron 20 of 30)	116173.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	3.44057675585067	3.93531085247584	3.49995814688392	3.53238914727024	3.62020683822206	3.49330386880861	3.54261789419973	3.70997122270521	-0.0697834270609319	0.889287247190427	0.958519732455951
Merged-chr13-34656586-2	chr13	34656486	34656686	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_105041, intron 2 of 3)	intron (NR_105041, intron 2 of 3)	3663.0	NR_105041	101056149.0	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	-	predicted gene 15908	ncRNA	2.87337611843752	2.72092788703342	2.8737571789106	2.7362532894662	2.65904825791802	2.79044072328269	2.67685242813838	2.8722160864026	-0.233868377571993	0.710204574661329	0.884017407313562
Merged-chr11-106085216-8	chr11	106085113	106085313	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 1 of 15)	CpG	311.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	4.90693243074557	5.08629538665844	4.86821374294219	4.79369701840736	5.24632248134208	5.36045419488074	5.43886454702261	5.43753268851287	0.860533574615729	0.00393095635100914	0.0395144106917779
Merged-chr9-100731970-4	chr9	100731834	100732034	+	740.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009282, intron 3 of 33)	MTC|LTR|ERVL-MaLR	88486.0	NM_001357265	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	3.9952254900749	3.66151117048747	3.64426046911705	3.88139205608566	3.69608897119986	3.76265778816298	3.63056112089091	4.15722908035521	0.0551700520649333	0.908191775542209	0.966006401639578
Merged-chr10-127120648-2	chr10	127120548	127120748	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177614, intron 1 of 13)	intron (NM_177614, intron 1 of 13)	512.0	NM_177614	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	3.37939896639332	3.04471813344006	3.15053983655403	2.90119912449542	3.11232404104725	3.32655983206523	3.07583764935662	3.65860641380971	0.704653859553491	0.23341992915103	0.543084925866739
Merged-chr19-29210163-4	chr19	29210063	29210263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41640.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	5.96482285514342	6.35747009436791	6.25468845855939	5.90174198360728	6.36127118330329	6.25270243456075	6.22262299629835	5.840266745762	0.0998289990205175	0.699566134334686	0.878859435133761
Merged-chr4-155086452-4	chr4	155086347	155086547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026395)	promoter-TSS (NM_026395)	-130.0	NM_001081100	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	8.78087793361387	8.70997400500183	8.41906290311339	8.45249142959308	8.64566452821632	8.43369229315512	8.44654212610667	8.45505466635839	-0.119902788509725	0.468613567482354	0.747803507343786
Merged-chr10-37137153-4	chr10	37137061	37137261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008538, intron 1 of 1)	CpG	1765.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	7.61142520649652	7.89232736315766	7.64790038192544	7.80978544185723	7.91796805989325	7.96471355583684	8.01979006548771	7.53406699902461	0.160569308778187	0.386761827060372	0.687797608117846
Merged-chr11-21540276-4	chr11	21540157	21540357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-29077.0	NR_028259	237694.0	Mm.72926	NM_172792	ENSMUSG00000078962	4932414J04Rik	-	RIKEN cDNA 4932414J04 gene	ncRNA	5.19165333738168	5.4993827980326	5.22559571685204	5.47943348620452	5.03122538643559	5.30112988612667	5.61083814572038	5.51225445216464	0.0110593299408194	0.971441658704361	0.989698076674172
Merged-chr11-86822996-4	chr11	86822906	86823106	+	911.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-15346.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	4.30187728639827	4.33043515194211	4.25981478013784	4.39914152674703	3.96349138506759	4.19733038834405	3.95276346578169	4.25714887791538	-0.600580299329435	0.136649963746381	0.411151361943764
Merged-chr19-25074994-4	chr19	25074898	25075098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 4 of 47)	intron (NM_028785, intron 4 of 47)	75469.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	5.21021505381393	5.27546942277089	5.39641509438716	5.65388765606851	5.10382894848631	5.21168953490343	5.57946788485004	5.71807425060859	0.0196010081076991	0.951110167586438	0.982556219406068
Merged-chr15-78248614-4	chr15	78248524	78248724	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 1 of 9)	intron (NM_008677, intron 1 of 9)	3813.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	5.85293778518942	6.04126517424207	5.21692696974783	5.65497284584325	5.26783046144598	5.32632194528255	5.38147926706477	5.14272254621267	-0.773649709090961	0.0126979606604712	0.0935543051290423
Merged-chr5-88399982-4	chr5	88399900	88400100	+	957.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23892.0	NM_027793	71421.0	Mm.79700	NM_027793	ENSMUSG00000029282	Amtn	5430427O21Rik	amelotin	protein-coding	4.99107699213446	5.15384625643996	5.29131043883792	5.5036747903334	5.46616808169561	5.20545260333355	5.37746575434078	4.87124022768585	-0.0116984443790661	0.971565293382019	0.989698355367312
Merged-chr10-111925664-4	chr10	111925555	111925755	+	779.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47040.0	NM_178610	52705.0	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	4.09518077401603	3.7985119977169	3.99813529369748	4.16061329632865	4.12519007158233	4.01514474697654	3.98147876969714	4.55892774117458	0.419817457370982	0.34134272597544	0.650430858980871
Merged-chr6-97804631-4	chr6	97804537	97804737	+	833.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2421.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	3.93624167460786	4.05405322918818	3.47323931457449	3.8690199630912	3.90380969291714	4.0591396245903	4.09981587828153	3.9823650005875	0.429246021312766	0.347465194605579	0.655506340921964
Merged-chr15-97821070-4	chr15	97820978	97821178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	URR1B|DNA|hAT-Charlie	-6215.0	NM_001204281	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	5.98654726364578	6.07015304469432	5.64942258515557	5.48922608637687	5.62488853440528	5.25549831239405	5.67117195756302	5.50912734174269	-0.46794572143724	0.115007401164643	0.375320334120313
Merged-chr1-75245010-4	chr1	75244885	75245085	+	878.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159885, exon 9 of 9)	3' UTR (NM_001159885, exon 9 of 9)	8283.0	NM_001159885	56812.0	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	3.45684879479112	3.97113432506051	3.7506130706713	4.01944619466917	3.72101132837447	3.86936421038802	3.78652504777771	3.79997694475827	-0.114323882036335	0.812043650014693	0.927418891027466
Merged-chr4-123904943-4	chr4	123904842	123905042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019660)	promoter-TSS (NM_019660)	-71.0	NM_019660	56309.0	Mm.446553	NM_019660	ENSMUSG00000028647	Mycbp	5730488M09Rik|AW552132|AW742590|Amy-1	MYC binding protein	protein-coding	8.25333690563478	7.97217346780926	7.88192904345272	7.81546866820884	8.10250203451802	8.12515639198786	8.21576870615738	7.94224142261425	0.148208324347121	0.400995533062898	0.698765173645165
Merged-chr2-6162894-3	chr2	6162761	6162961	+	633.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29978.0	NR_033471	100038358.0	Mm.353975	NR_033470	ENSMUSG00000102887	Gm10857	AU015850	predicted gene 10857	ncRNA	3.19626642436878	3.25048251082771	3.34970119374994	3.24706995729056	2.63662804528186	2.93116474390323	2.74187319857247	2.95797103698798	-2.08393667796292	0.00177564774676133	0.0213314482644261
Merged-chr18-62252487-4	chr18	62252389	62252589	+	876.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-71715.0	NM_008313	15562.0	Mm.20440	NM_008313	ENSMUSG00000026322	Htr4	5-HT-4|5-HT4|5-HT<4L>|5HTR4	5 hydroxytryptamine (serotonin) receptor 4	protein-coding	3.95810614294887	4.07593130484847	3.71902832666171	4.26346766577355	4.69426527403434	4.46641941852682	4.09639393082185	4.29322636282449	0.919759750762917	0.041504575573975	0.206331483781252
Merged-chr9-89200495-4	chr9	89200406	89200606	+	926.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007534, intron 1 of 1)	intron (NM_007534, intron 1 of 1)	1233.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	4.49596609512066	4.68596511473894	4.8876315757211	3.63622179112071	4.45838824385414	4.78865122885988	4.43364113491829	4.2675916235779	-0.0178740966053084	0.970581429843068	0.989444811016581
Merged-chr13-5778391-4	chr13	5778337	5778537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	79655.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	5.59813659875324	5.35895914905015	5.59911955054872	5.41406324170029	5.1763708230557	5.20050590922962	5.14118711063338	5.49354829669161	-0.414112686089689	0.153145931573782	0.437555330104179
Merged-chr6-127264113-3	chr6	127264131	127264331	+	756.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43736.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	2.86926884300564	2.90012557337834	3.05784716097863	3.16575396306746	2.75166870365073	3.04383875557436	3.0463210518169	3.22013119322595	0.0454988974592282	0.941269570790649	0.978832177973057
Merged-chr15-80083451-4	chr15	80083357	80083557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013762)	promoter-TSS (NM_013762)	-51.0	NM_013762	27367.0	Mm.290771	NM_013762	ENSMUSG00000060036	Rpl3	F2|J1	ribosomal protein L3	protein-coding	7.58599265485179	7.66724415314188	6.90679186727339	6.8603498952696	7.49588997640331	7.98846464530114	7.22361593262987	7.36029312420451	0.326222794035812	0.224424302288904	0.532782075570323
Merged-chr7-89335452-4	chr7	89335450	89335650	+	801.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 2 of 14)	intron (NM_001360746, intron 2 of 14)	3237.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	3.48463100221938	3.51976913334635	4.1392711776701	3.60786989197911	3.63453078246547	3.7197621637462	3.53123902142878	3.65408973262579	-0.2267220629059	0.6555506292871	0.85617317875278
Merged-chr13-37778303-4	chr13	37778186	37778386	+	955.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-47752.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.76955990687111	4.96783912287665	5.15043012360174	5.1326670714123	4.59015856826226	5.06007747393541	4.74812425058572	5.17630203908456	-0.229827896708016	0.508652121697127	0.773618576288031
Merged-chr1-125447804-3	chr1	125447686	125447886	+	883.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12059.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	3.79380363435848	3.88327399139716	3.38971163983648	3.26875515434697	3.94029858426992	3.75553879801064	4.08227789356337	3.57638463303786	0.744563438493769	0.153749148408898	0.438641655787968
Merged-chr18-34885000-4	chr18	34884860	34885060	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23753.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	4.43027995270717	4.20498256360473	4.29757151251548	4.28619844811916	4.75859450647266	4.42663472801879	4.07907070099353	4.85350791407609	0.608427444008017	0.133800530748613	0.407275681558906
Merged-chr11-117824732-4	chr11	117824641	117824841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009387, exon 3 of 7)	exon (NM_009387, exon 3 of 7)	-1178.0	NM_027827	71562.0	Mm.273958	NM_027827	ENSMUSG00000017718	Afmid	9030621K19Rik|Ammd|FKF|KFA|Kf|formylase	arylformamidase	protein-coding	6.65381479609836	6.81157289058174	6.57758791084913	6.29506457096283	6.62030466045143	6.15754320671166	7.01485763206407	6.54055942760507	0.0474894134516208	0.854482002670058	0.945191372972774
Merged-chr4-117550282-4	chr4	117550183	117550383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080469)	promoter-TSS (NM_080469)	-41.0	NM_001356404	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	8.08155444161974	8.22911221531489	7.96613668824321	8.27889343370063	8.35164801857673	8.29289162467969	8.38065790317436	8.12257346131736	0.178697059673814	0.279038754428271	0.591245185051942
Merged-chr2-129618992-1	chr2	129618892	129619092	+	637.0	f1_c57bl6.idr	intron (NM_001355158, intron 6 of 8)	intron (NM_001355158, intron 6 of 8)	23530.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	2.70990872964631	2.36467582150855	2.49208259568453	2.34575787993331	3.16380955892269	2.95043868382266	2.82708244925605	2.95340952590187	2.60975453838788	0.000176168629110896	0.00327146017518509
Merged-chr1-171159798-2	chr1	171159698	171159898	+	818.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008623, exon 7 of 8)	exon (NM_008623, exon 7 of 8)	4280.0	NM_001315500	17528.0	Mm.9986	NM_008623	ENSMUSG00000056569	Mpz	Mpp|P-zero|P0	myelin protein zero	protein-coding	2.92524983444233	2.65514812015494	3.21416970568381	2.96836954081771	2.9635721299696	3.03464031552839	3.09401139545212	3.10466474696197	0.392574600052221	0.523525044395944	0.782507755382099
Merged-chr9-56924762-4	chr9	56924672	56924872	+	942.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175483, intron 1 of 1)	intron (NM_175483, intron 1 of 1)	3599.0	NM_175483	235406.0	Mm.191459	NM_175483	ENSMUSG00000032733	Snx33	E130307J07Rik|Sh3px3	sorting nexin 33	protein-coding	5.80129173842107	5.4855937122186	5.31290971311456	5.80835517479942	5.19971386593971	5.11396407318256	4.64677123680551	4.84687536480459	-1.17971848023383	0.00038534671274284	0.00623894378545623
Merged-chr16-30065315-4	chr16	30065239	30065439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008235)	promoter-TSS (NM_008235)	-18.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	7.88501571498281	7.99371112552364	7.84204947058595	7.80974641226692	7.86737089542576	8.08480771746732	7.66198507997059	7.8063603136785	-0.0257241387338695	0.881629275812942	0.955384724180766
Merged-chr9-21003458-3	chr9	21003373	21003573	+	988.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357899, intron 3 of 8)	intron (NM_001357899, intron 3 of 8)	736.0	NM_001357899	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	4.26442077974125	4.40886844765065	4.47160217710541	4.42333485905263	4.46317946361431	4.19637176902562	3.9483261340429	4.12053950967851	-0.453901294193784	0.26648860270834	0.578164752957072
Merged-chr12-24831099-2	chr12	24830907	24831107	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083341)	promoter-TSS (NM_001083341)	-592.0	NM_026037	67216.0	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	3.39379574510536	3.01492807531473	3.57449858266845	3.08441605948909	2.80418761013053	2.8177615108947	2.98990553872229	3.06270738106457	-1.50866267038435	0.0191953914811226	0.12442480377332
Merged-chr12-86836878-4	chr12	86836770	86836970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47944.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	6.41583941771963	6.27589709358621	5.85966043470316	6.18955297195494	6.44915462096246	6.46968547718799	6.35044842035618	6.02492110947458	0.207074910910198	0.401615411024221	0.699177795364991
Merged-chr13-59666604-3	chr13	59666511	59666711	+	711.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035122, intron 1 of 9)	intron (NM_001035122, intron 1 of 9)	9173.0	NM_001035122	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	3.01763909950451	2.97216244091014	3.18728360633526	3.13356918918409	3.08529558926955	2.7790861874611	3.06554200534625	3.01652618145983	-0.354035595194728	0.551839050951693	0.799107942541615
Merged-chr5-24827351-4	chr5	24827256	24827456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053075, intron 1 of 7)	intron (NM_053075, intron 1 of 7)	15005.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	6.28304084473351	6.02045802767282	5.97266856439003	6.09101067762168	6.33287287907015	6.40314831286388	6.25196267319249	6.45119323500129	0.401801804308897	0.0747425393417124	0.294856687236255
Merged-chr1-166146862-4	chr1	166146767	166146967	+	904.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021610, intron 2 of 6)	intron (NM_021610, intron 2 of 6)	16646.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	4.32650806363582	4.65672954533955	4.28002842015169	4.8947031478832	4.44172848255146	4.30698157361468	4.43881546932909	4.36993918993605	-0.441324854515226	0.270846543989703	0.58266346766534
Merged-chr8-106060022-2	chr8	106059929	106060129	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_010901, intron 1 of 9)	CpG	426.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	5.1611538524543	5.35763592117524	5.16202774137297	5.10522011136261	5.01221435912507	5.59861111932297	5.10380292585764	5.28319814671767	0.113970098680653	0.715650168064765	0.886331836593157
Merged-chr15-31565303-4	chr15	31565202	31565402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3531.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	6.3950008824508	6.21669947814404	6.36141476075989	6.71632604443078	6.07489318418794	6.24249120403401	6.21910207490393	6.10449818679597	-0.444530909048217	0.0633552555182462	0.267152348964609
Merged-chr18-38992366-2	chr18	38992266	38992466	+	988.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175164)	promoter-TSS (NM_175164)	-779.0	NM_001361073	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	3.70373183596826	3.51838707828778	3.75397828322556	3.62140877148222	3.5748156808982	3.71529115367899	3.47182168297226	3.88883893164395	0.0639027073778935	0.89413123968818	0.960481560907683
Merged-chr17-45627008-4	chr17	45626914	45627114	+	961.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24912.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	4.96234690757766	5.2676371757582	4.59302354566947	4.75944525084689	5.2510859668322	5.17298087106195	5.38327452287394	4.84779615073454	0.505156727089163	0.145185937422949	0.424611300839349
Merged-chr9-90257556-4	chr9	90257439	90257639	+	947.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	13230.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	4.18431765277224	4.31489314571544	4.94929952026983	4.67609232800253	4.3368341764184	4.41430015201758	4.60194192395607	4.33022062737828	-0.330360950093326	0.417914005236808	0.711558449437884
Merged-chr1-152528943-4	chr1	152528856	152529056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 14 of 17)	L1MEd|LINE|L1	96261.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	7.99381958464448	8.25254393126271	7.93923878528128	7.88407307238796	8.13374959304098	8.05830805169602	8.1751509981957	7.82967334173474	0.0454137467964128	0.797233649063033	0.921580087806052
Merged-chr13-55418259-4	chr13	55418158	55418358	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021489, exon 14 of 14)	exon (NM_021489, exon 14 of 14)	-3026.0	NM_029303	75477.0	Mm.432537	NM_029303	ENSMUSG00000044444	Pfn3	1700012P12Rik	profilin 3	protein-coding	5.66161513148001	5.70514012176211	5.28046490789594	5.07561114656647	5.53936308117731	5.17771752035335	5.56154410808894	5.24460298409711	-0.0811325510054376	0.800640272806307	0.923103471519366
Merged-chr2-48689283-4	chr2	48689183	48689383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124826.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	5.78969806960369	5.95418421806315	5.74136462862258	5.8041382606754	5.95552349094321	5.57677775717002	5.76135972418869	5.94539030714074	0.00399268864770569	0.987516905377285	0.995315979319888
Merged-chr16-92423594-4	chr16	92423493	92423693	+	902.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-23515.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	4.16170206736293	4.30275017691583	4.16231060093769	4.43504259137715	4.33606169061461	4.13270982668434	4.47736891751784	4.15984942268699	0.00848203767656089	0.983062525475903	0.993940447455246
Merged-chr9-78428369-4	chr9	78428265	78428465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14872.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	6.47128272049521	6.37230843751237	6.43833222486171	6.6934436590367	6.39031297298635	6.38920566723004	6.45598166623078	6.50097222500067	-0.11848731867825	0.586322211226777	0.818588624439808
Merged-chr14-25378194-5	chr14	25378163	25378363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-80922.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	5.11484127098792	5.55380015398572	5.44721201382513	5.28766640637488	5.1326574559318	5.22185757872436	5.12462719383921	5.24289131685876	-0.3310956743537	0.264542307931453	0.576559506912425
Merged-chr2-73529397-4	chr2	73529309	73529509	+	987.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153138)	promoter-TSS (NM_153138)	78.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	5.07943213613541	5.07796548576419	5.40564280955472	5.3446168913216	4.71218072684252	5.18639783347108	4.95105871824735	5.23502731669554	-0.40832547305151	0.211279947594759	0.515889519736796
Merged-chr11-34010008-1	chr11	34009908	34010108	+	1000.0	f0_balb.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-16815.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	5.1778239488593	5.56824550570167	5.36111266049163	5.06175202339387	5.25227681700022	5.1814377696047	5.21661977628205	5.23885403593516	-0.13090549860834	0.667966015267695	0.862818268009847
Merged-chr18-54991289-4	chr18	54991172	54991372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 1 of 8)	intron (NM_001360787, intron 1 of 8)	-1092.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	6.14527247744487	5.92810450852279	5.56543456032255	5.79082036338678	6.49972170473318	6.56081214688627	6.55321528787974	6.27653272042292	0.9291581835247	0.000132004980063001	0.00256230773817953
Merged-chr7-107748164-3	chr7	107748058	107748258	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001205227)	TTS (NM_001205227)	9874.0	NM_001205227	320635.0	Mm.132828	NM_177216	ENSMUSG00000048065	Cyb5r2	D630003K02Rik|b5R.2	cytochrome b5 reductase 2	protein-coding	3.34534370664462	3.28900709007509	3.71022728914426	3.81136595992163	3.50490279392747	3.26212437184837	3.33399761495519	3.45906088077284	-0.574171413939526	0.294354286032917	0.606614080475317
Merged-chr3-144568965-4	chr3	144568882	144569082	+	923.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355234, intron 1 of 6)	intron (NM_001355234, intron 1 of 6)	1234.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	4.01874700844187	3.42059947219038	3.87507593869751	3.91145257463926	3.99045265690427	4.04731287878969	4.00153310983918	3.97063669578064	0.482058313139778	0.296417118357266	0.608478404731474
Merged-chr19-8953752-4	chr19	8953649	8953849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197993)	promoter-TSS (NM_197993)	-83.0	NM_197993	70044.0	Mm.165979	NM_197993	ENSMUSG00000071645	Tut1	2700038E08Rik|PAPD2|Rbm21|TUTase6|U6-TUTase|star-PAP	terminal uridylyl transferase 1, U6 snRNA-specific	protein-coding	7.27122705842287	7.46274242040885	7.4651451786754	7.13828702399763	7.60627003380669	7.73264578678555	7.42821007341478	7.35213081190594	0.274870941632019	0.152544478407921	0.436763594091937
Merged-chr4-133153831-3	chr4	133153722	133153922	+	791.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	23189.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	3.34304410368388	3.61741006380352	3.52142320354858	3.36620886896629	3.66642486158502	3.74556882002329	3.66223343246725	3.46291462670935	0.572785787194031	0.240857880043432	0.551420320401236
Merged-chr5-120165240-4	chr5	120165126	120165326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028762, intron 21 of 23)	intron (NM_028762, intron 21 of 23)	-25963.0	NR_045793	100503427.0	Mm.446834	NR_045793	ENSMUSG00000097368	Gm10390	-	predicted gene 10390	ncRNA	6.87079288209025	6.79579736605685	6.46193442376702	6.8657158652111	6.92409247573913	6.52788694094309	6.91219034734833	6.22154168017929	-0.108629342942893	0.659967044725293	0.858664076122352
Merged-chr9-118706351-4	chr9	118706245	118706445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-5347.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.10047495036184	6.78057706331296	6.71885438115497	6.97315439341511	6.53005453335387	6.86539570437222	6.62373487905705	6.69906340555711	-0.322370831951732	0.126866208207499	0.396200852667671
Merged-chr11-49997430-3	chr11	49997330	49997530	+	960.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-27901.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	4.39176954589405	3.68502419916039	3.76734404543639	4.00187147793538	4.21235327168503	3.94490885895163	3.86187746348676	4.02481151411879	0.0914383286957313	0.845671059560295	0.941557049643182
Merged-chr16-12589102-4	chr16	12588995	12589195	+	836.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-222295.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	4.06084404942608	3.85538513856904	3.72750178224019	4.68483658156045	3.78536915154244	3.97161390068743	4.42032035767188	4.40194406963367	0.0501670654032804	0.924361701194223	0.971978099765165
Merged-chr13-23431541-4	chr13	23431461	23431661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015492)	promoter-TSS (NR_015492)	-544.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	5.33123309225622	5.58735183101205	5.44770660081717	5.34363600976048	5.27449094035201	5.31372112613936	5.21239744874845	5.54963599499626	-0.154058279387813	0.589723554942365	0.820539533210917
Merged-chr2-60172109-2	chr2	60172009	60172209	+	806.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-37827.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	3.18840080239986	3.11419727427073	3.29140965641605	2.97432135534257	3.20049477698545	2.85329665474634	2.81233741177711	2.81900896587111	-0.832873009788732	0.191455138944406	0.490854206495116
Merged-chr18-69196958-4	chr18	69196850	69197050	+	924.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147542.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	5.17489876525065	5.17468096210214	4.88819144250738	5.25171923477686	4.66990716088277	4.87202106556237	4.399118673662	4.64959276090199	-0.980046728427112	0.00416180139309249	0.0413617510973095
Merged-chr8-106577379-4	chr8	106577283	106577483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9760.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	5.04367385754747	5.25455351416364	5.3570840439271	5.36652855750169	4.96340438631468	5.03310358252616	5.30248302327331	5.20683821567563	-0.265706063200416	0.383731446532587	0.685515575911105
Merged-chr7-140856383-4	chr7	140856302	140856502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018742)	promoter-TSS (NM_018742)	-19.0	NM_018742	54399.0	Mm.155696	NM_018742	ENSMUSG00000025484	Bet1l	2610021K23Rik|Gs15	Bet1 golgi vesicular membrane trafficking protein like	protein-coding	7.22939067686026	7.21337510966121	6.91479714159008	7.09786298662842	6.97806713428153	7.11956194883651	7.35489407995334	7.34816998599399	0.115143732783544	0.563632560761162	0.806428731514002
Merged-chr13-23555609-2	chr13	23555509	23555709	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145713, exon 1 of 1)	exon (NM_145713, exon 1 of 1)	577.0	NM_145713	14957.0	Mm.247046	NM_145713	ENSMUSG00000052565	Hist1h1d	H1.3|H1D|H1f3|H1s-4	histone cluster 1, H1d	protein-coding	3.42473803261072	3.14288014799904	2.99523971984614	2.95622675749757	3.15476465922729	3.43182963677589	3.46125193584069	3.5711706497353	1.00798648765452	0.0745411856378399	0.294337539547022
Merged-chr9-44418091-4	chr9	44418003	44418203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201372)	promoter-TSS (NM_201372)	-34.0	NM_201372	382073.0	Mm.259573	NM_201372	ENSMUSG00000043923	Ccdc84	D630044F24Rik|Gm1114	coiled-coil domain containing 84	protein-coding	6.89388605226552	7.19132641488517	6.69328623149488	6.62124986909337	6.9637664093703	7.16123509594188	6.94968146701107	6.74951891381827	0.139165573917748	0.535682168368212	0.789809240803911
Merged-chr4-129742417-4	chr4	129742332	129742532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045036)	promoter-TSS (NR_045036)	-129.0	NR_045036	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	7.49517177212218	7.63133537759488	7.11486906397826	6.89324442753076	7.75008425089068	7.65517130705647	7.21907711822506	7.51837474774552	0.325666112577361	0.164084807899101	0.454038022239756
Merged-chr12-98271225-5	chr12	98271127	98271327	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008152, intron 1 of 1)	Lx2B2|LINE|L1	2592.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	4.91582268006115	4.85249313601384	4.76515590968636	4.77209973824105	5.00467747487117	4.90132989727134	5.28492759168343	5.01608961185863	0.467822524184849	0.140805142967149	0.417372642787602
Merged-chr11-79161301-4	chr11	79161300	79161500	+	889.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-14927.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	3.81781383732808	3.82276148187818	3.9557943163906	3.26725886467036	3.2288118348817	3.78563254820846	3.84828464797004	3.66243307293982	-0.263450361841615	0.63341988803588	0.844651176689519
Merged-chr2-165926518-3	chr2	165926382	165926582	+	816.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-41644.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	3.50637880302744	3.51865114835656	3.19299901377965	3.60044334773026	2.98090133249426	2.9625758627543	2.99443213114269	3.30539451623585	-1.65203075248732	0.0064706238215967	0.0573851424518157
Merged-chr11-117939889-4	chr11	117939779	117939979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29487.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	6.24664796934303	5.98304328694249	5.81329804326228	5.72573404886814	5.673209063497	6.17170821331405	6.18035981978056	5.67940449850088	-0.00799602372740364	0.977414017503834	0.991888117862217
Merged-chr9-77806943-4	chr9	77806843	77807043	+	977.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52408.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	4.88275926383322	5.01697810981267	4.50285434979743	5.02542744260823	5.14177694079695	4.94443146971522	4.93100710983538	5.113793469573	0.299122258289545	0.372652862724153	0.676386604956396
Merged-chr10-75795110-4	chr10	75795014	75795214	+	590.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008185, intron 2 of 4)	RLTR28|LTR|ERVL	2617.0	NM_001358778	14871.0	Mm.2746	NM_008185	ENSMUSG00000001663	Gstt1	AI255817|Gstt1-1	glutathione S-transferase, theta 1	protein-coding	3.68507236934511	3.76357450815954	3.31933530005262	3.49209462087337	3.86519518998854	3.63196200204216	3.81970974325993	4.05104958494939	0.835755984038408	0.0841980700923378	0.315644094965109
Merged-chr1-151948156-3	chr1	151948017	151948217	+	887.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 3 of 5)	intron (NM_197990, intron 3 of 5)	142203.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	3.08612656872291	2.76455807754616	2.92040622344817	2.77542100300645	2.69975114319511	3.03021727837283	2.65201879181141	2.72840324182076	-0.484114951362361	0.454861794835236	0.738572565672132
Merged-chr11-90235417-4	chr11	90235319	90235519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14057.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	6.57390779509322	6.61881572771218	6.78036256016917	6.66443567194667	6.57575937993082	6.59960276191775	6.2580758291674	6.5381159028219	-0.230443462562587	0.27719269475572	0.589300206200641
Merged-chr10-58323399-4	chr10	58323300	58323500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359115)	promoter-TSS (NM_001359115)	-147.0	NM_001359115	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	9.28625604941795	9.50585490070974	9.57842428396712	9.40946317892162	9.41350992101897	9.49213296370327	9.53305832520316	9.31435193876477	-0.0106581242945626	0.940975971588319	0.978676631829834
Merged-chr5-24752184-4	chr5	24752060	24752260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153076, intron 3 of 3)	(AGGGGG)n|Simple_repeat|Simple_repeat	5683.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	5.41004824523321	5.27202491857148	5.5841249053534	5.51512978002262	5.58914375389142	5.83698273970245	5.8841805844121	5.93084969580236	0.595352912120416	0.0272835814214496	0.15740630066079
Merged-chr6-108783045-4	chr6	108782930	108783130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026011)	promoter-TSS (NM_026011)	-29.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	7.56440526687615	7.5864399566622	7.57479756614431	7.35661332124315	7.92728345078092	7.98344447783592	8.01319460392363	7.74689021144109	0.532545358705497	0.00192911693671066	0.0227376410727154
Merged-chr7-5014356-4	chr7	5014289	5014489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011813)	promoter-TSS (NM_011813)	-136.0	NM_001360242	23877.0	Mm.38911	NM_011813	ENSMUSG00000061374	Fiz1	AI790204|mFLJ00416	Flt3 interacting zinc finger protein 1	protein-coding	6.19595336049484	6.04473554265114	5.8035780574772	5.90421550646771	6.53334661840808	6.50487593428707	6.74197796875666	6.26980145769152	0.80738069731123	0.000650615002590518	0.00951708287492611
Merged-chr10-128259108-4	chr10	128259013	128259213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	4982.0	NM_133996	28194.0	Mm.439846	NM_133996	ENSMUSG00000051716	Apon	AI195275|D10Ucla2	apolipoprotein N	protein-coding	5.86484154544652	5.76335100530521	5.86587680161051	6.12725558843783	5.47565606493359	5.56572669624112	5.51121083300747	5.56338889372086	-0.668356600427183	0.0111178018876817	0.0850918301680962
Merged-chr6-30468794-4	chr6	30468710	30468910	+	660.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7825.0	NR_131049	69337.0	Mm.396168	NR_131049	ENSMUSG00000085470	1700012C14Rik	-	RIKEN cDNA 1700012C14 gene	ncRNA	3.86405148871221	3.75099994641626	3.6034875933906	3.52883938309796	3.68764746896619	3.7786468490062	3.98053155199171	3.76423145796309	0.363488913331998	0.433567195836727	0.723109785661521
Merged-chr2-127080463-2	chr2	127080363	127080563	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 1 of 7)	RMER15|LTR|ERVL	9806.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	4.29974012488267	4.41144552794399	4.20738375177733	4.43898139517415	4.24454204423565	4.47266384258903	4.14092848636682	4.54155362997847	0.00788330892299416	0.983846816608842	0.994177974055515
Merged-chr7-122347617-3	chr7	122347504	122347704	+	690.549988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	58479.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	3.30847049423487	3.33852800805903	3.25029153876677	3.41062723094866	3.49355228118774	3.16520552104889	3.40496931306432	3.30719224904567	0.0752618101681567	0.886624479045526	0.957446551626423
Merged-chr11-110483384-3	chr11	110483298	110483498	+	840.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 2 of 11)	intron (NM_001356352, intron 2 of 11)	4058.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	3.32726380327982	3.41602851362142	3.05463905570107	3.19625198543909	3.52061102770189	3.77499334047786	3.43246419210364	3.83153101198078	1.31904264121882	0.0122221933336033	0.0911051941870929
Merged-chr6-76268311-4	chr6	76268209	76268409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-974168.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	6.01666931422213	6.28075938034085	6.66859178989387	7.04730215355653	6.46103921513971	6.72260127960502	6.54455759309629	6.17283508988152	-0.132972671909307	0.647983107250657	0.851923231151848
Merged-chr2-49417187-4	chr2	49417098	49417298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34288.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	7.78917878866026	7.59446482715757	7.82096923748569	8.05824290159999	7.62602862851792	7.66404108137941	7.68955351855384	8.0039368870344	-0.106476361729845	0.577032946648033	0.81391570278145
Merged-chr10-121599484-3	chr10	121599350	121599550	+	767.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 22 of 24)	intron (NM_001359618, intron 22 of 24)	-12656.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	3.04874826625091	2.81078419026888	2.96955314244206	2.49031378850531	3.7927129975849	3.79793846384692	3.95870965698915	4.08961438492659	4.89169280682755	1.70197667651699e-12	1.74812406721216e-10
Merged-chr4-122860210-4	chr4	122860121	122860321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007598, intron 12 of 12)	intron (NM_007598, intron 12 of 12)	23994.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	5.25107213836567	5.54563835762548	5.55453801029974	5.84266350072463	5.81948194280905	5.28881290095341	5.67760376941555	5.49564114596232	0.0210504289001084	0.944424529070304	0.980029938254562
Merged-chr9-37236095-4	chr9	37236016	37236216	+	908.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145960, intron 10 of 18)	intron (NM_001145960, intron 10 of 18)	19622.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	6.63510873963622	6.46792195953479	7.02435110121576	7.18353982539018	4.77982933331984	5.29744565662403	4.7422366202287	5.0540814550391	-3.15720415231644	1.92785224438688e-23	1.03956511290313e-20
Merged-chr1-149856932-4	chr1	149856835	149857035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 14 of 17)	intron (NM_008869, intron 14 of 17)	65504.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	5.21532698833041	5.30292343412594	5.71865964389392	5.39075088660384	5.82222663411119	5.8183419372086	5.76028231335898	6.10907524532898	0.779083595664278	0.00462739738208129	0.0448493352749406
Merged-chr16-36665980-4	chr16	36665888	36666088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019388)	promoter-TSS (NM_019388)	89.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	7.18661833717584	8.13255254667274	7.29069718060889	6.92460369077027	7.6669227992303	7.76913570442001	7.81710024183151	7.24095649894423	0.226518841823834	0.420475013321981	0.713274332060183
Merged-chr8-71297004-4	chr8	71296910	71297110	+	961.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	24296.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	5.58668373076398	5.03562208634493	4.9486434560208	5.62997613626162	5.21957565583819	4.96880302513026	4.76618793933878	5.01862395816176	-0.629640371796898	0.0741133622910777	0.293284387102027
Merged-chr13-41373041-4	chr13	41372917	41373117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 2 of 7)	intron (NM_001111324, intron 2 of 7)	-14016.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	5.94513607481759	5.93923905018153	6.1393210862523	6.19742378921808	6.03112946674342	5.92442729360178	6.4211137951348	6.13493054293143	0.109289719249329	0.659905087946822	0.858614854951319
Merged-chr19-4061329-4	chr19	4061187	4061387	+	977.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1840.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	5.00532587852197	5.36227727049789	5.29897889607053	5.01368571835861	5.25129091219992	5.35094959525973	5.40891281257956	4.80618576003295	0.0970039224804866	0.764216364608973	0.907569734027842
Merged-chr7-128032859-2	chr7	128032759	128032959	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	28481.0	NM_001079932	434246.0	Mm.389924	NM_001079932	ENSMUSG00000042828	Trim72	BC067209|MG53	tripartite motif-containing 72	protein-coding	2.68860035172814	2.53673997850999	2.68897334484418	2.15876350847498	2.65716523493783	2.452613001791	2.55403100957215	2.62609508820409	0.216642955639258	0.774245722115024	0.911768711917431
Merged-chr4-70578462-4	chr4	70578364	70578564	+	815.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	-43536.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	4.53450734682677	3.97437947257233	4.49621513459138	4.45495717826892	4.29084585567191	4.02918005446032	4.62300646970805	4.71081070272263	0.130411472351783	0.76114726828408	0.906512173824769
Merged-chr8-70610865-4	chr8	70610777	70610977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2563.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	6.65546675988311	6.66137994831672	6.13688740575493	6.12263169142634	6.63599258421181	6.3375515918537	6.57798105258812	6.85456480576201	0.299324134490657	0.236960920858818	0.547052091300172
Merged-chr14-17743857-4	chr14	17743746	17743946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	82886.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	5.8799709357958	6.03637008605475	6.35455950873749	6.63444691691736	6.13519019325387	6.15425901059552	6.0567935678963	6.14560071996772	-0.239301631317394	0.370798268005612	0.675014064408477
Merged-chr4-132586331-2	chr4	132586231	132586431	+	758.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22264.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	3.44978639833548	3.21901060002998	3.13874889142669	2.95672638916167	3.11225998687592	3.18972355450764	2.87144385716343	2.94789763444918	-0.633632929456575	0.296043187206456	0.607912125960485
Merged-chr11-60220555-4	chr11	60220425	60220625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011480, exon 1 of 19)	exon (NM_011480, exon 1 of 19)	102.0	NM_011480	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	6.29250993820637	6.46363118731787	6.08183850306005	6.03099260822485	6.15726527711007	6.29876798965423	5.30967723588034	6.17810776107654	-0.283768613659149	0.342874373045926	0.6516462545027
Merged-chr4-136462774-7	chr4	136462661	136462861	+	832.071411	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7000.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	3.31573325465646	3.4634125335384	3.37834885348703	3.42917128985998	3.53653435867721	3.61075986093309	3.48105434178768	3.87365861317148	0.750941987146166	0.130718453169472	0.402410609652443
Merged-chr5-85924608-3	chr5	85924537	85924737	+	829.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140946.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	3.51576815039047	3.50139734124934	4.09486286179234	4.01736479892953	3.41104412510315	3.85954036547853	3.67219099553084	3.57377854184423	-0.551488788428343	0.292956510252	0.605486554290982
Merged-chr5-36465008-4	chr5	36464922	36465122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024478)	promoter-TSS (NM_024478)	-163.0	NM_024478	17713.0	Mm.21535	NM_024478	ENSMUSG00000029198	Grpel1	AA408748|mt-GrpE#1|mt-Grpel1	GrpE-like 1, mitochondrial	protein-coding	8.52191886204849	8.79674617699266	8.40991250312094	8.45068416788376	8.75834670191655	8.97070056285884	8.6876523396572	8.60801752076964	0.262081938490197	0.120746786383214	0.384724213912194
Merged-chr1-162665705-4	chr1	162665597	162665797	+	952.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7478.0	NM_001177581	100038657.0	Mm.416999	NM_001177581	ENSMUSG00000091060	Myocos	7420461P10Rik	myocilin opposite strand	protein-coding	4.98757719250983	5.25008291910838	5.66892768422227	5.54989819109539	4.40958987865216	4.93362191988453	5.09962962955562	4.74892107832956	-1.12102783958051	0.00200148714795447	0.0234123013482747
Merged-chr12-113026846-3	chr12	113026749	113026949	+	833.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	12341.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	4.74430622966338	4.40443578375473	4.53409231616455	4.75952862892698	4.42169341855341	3.96586910567876	3.95057377111981	4.3236635203872	-1.01174313274065	0.0158623443098091	0.109037561397713
Merged-chr17-21532236-4	chr17	21532095	21532295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131123, intron 2 of 2)	intron (NR_131123, intron 2 of 2)	-3344.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	6.01531040843273	5.9238691464399	6.12180218744582	6.43480999736379	5.87376124095731	5.95345559674534	6.40833700188446	6.05527819700591	-0.108268812301754	0.686064843710342	0.871760528240684
Merged-chr2-68879811-4	chr2	68879702	68879902	+	932.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	(TG)n|Simple_repeat|Simple_repeat	18361.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	4.99460661770862	4.79766247034462	4.48658179167432	4.67270976301021	5.1574709438293	4.57076173673872	4.68461677005891	5.27874356534196	0.440184605467528	0.237928059978364	0.548215763990676
Merged-chr18-35562635-4	chr18	35562521	35562721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010771, intron 1 of 14)	CpG	463.0	NM_010771	17184.0	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	6.15569076850303	6.61457854539072	6.68276268978819	6.46642842961163	6.61998680027266	6.26882187481223	6.44800389851447	6.66360269413117	0.0292303284676257	0.900244728322356	0.963037675111283
Merged-chr10-94927059-2	chr10	94926959	94927159	+	747.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 1 of 30)	intron (NM_018797, intron 1 of 30)	17519.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	3.82644502468226	4.05458491574364	3.60819033262872	2.98292543836167	4.26601843500231	3.78830638562664	3.75950439635182	3.77335843981264	0.656066134412876	0.262651364186359	0.574445092878026
Merged-chr2-103797428-7	chr2	103797345	103797545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111290)	promoter-TSS (NM_001111290)	195.0	NM_001111291	53872.0	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	6.44506240171747	6.45856547618633	6.84298180327704	6.54612334590543	6.46058758583984	6.35559364981396	6.18773305402099	6.6034941293149	-0.24397736992734	0.285403511411922	0.597105888507119
Merged-chr5-64809522-4	chr5	64809443	64809643	+	944.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	6020.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	4.81787959799847	5.01540978660441	4.74086161877168	5.27978015956348	4.93391370491322	4.83488245459103	4.90345898082176	4.61174821290971	-0.342159365925904	0.328150776936321	0.639562009571217
Merged-chr6-115602494-3	chr6	115602395	115602595	+	787.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023290, intron 1 of 7)	intron (NM_023290, intron 1 of 7)	557.0	NM_023290	67027.0	Mm.101316	NM_023290	ENSMUSG00000000439	Mkrn2	2610002L04Rik|C81377	makorin, ring finger protein, 2	protein-coding	3.81368328284333	3.70273823124877	3.55373853309777	3.47221177227458	3.55555699756418	3.97934455793551	3.54055122174145	3.76402174074035	0.25958713104041	0.595501182246187	0.823979990107331
Merged-chr5-67451113-4	chr5	67450980	67451180	+	876.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-12818.0	NR_110363	320479.0	Mm.387187	NR_015582	ENSMUSG00000107385	C330024D21Rik	-	RIKEN cDNA C330024D21 gene	ncRNA	4.25427636683567	4.27726700372945	4.34508256167522	4.37762588126953	4.03747309822471	4.33444355155647	4.5957959832134	4.54298040213173	0.163383634044501	0.682356451141997	0.869765585685259
Merged-chr14-52244571-4	chr14	52244461	52244661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6989.0	NM_201637	67772.0	Mm.289934	NM_201637	ENSMUSG00000053754	Chd8	5830451P18Rik|AU015341|Duplin|HELSNF1|mKIAA1564	chromodomain helicase DNA binding protein 8	protein-coding	7.90731034156749	7.78961868725861	7.61074244823231	7.78856833926103	7.63184196589469	7.69617703586619	7.91157955363472	7.69920997421436	-0.0556077842936816	0.74668922300017	0.90024329344347
Merged-chr8-116267260-2	chr8	116267160	116267360	+	667.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-237755.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	2.7587714160249	2.911266721598	2.75902842031106	2.87417783137528	2.79217665913393	3.29012242439101	3.11515185356473	3.12627942433531	1.09857745600299	0.0762638051446051	0.298263009064823
Merged-chr15-101373662-1	chr15	101373562	101373762	+	875.0	f0_balb.idr	Intergenic	Intergenic	-3537.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	4.58644976436144	3.76525648264127	3.92630782647998	4.03306119526521	3.44271730015128	3.78108736087604	3.58544610152675	3.53389466198857	-1.55513661635505	0.002707148441574	0.0294861696897928
Merged-chr19-14641930-3	chr19	14641828	14642028	+	890.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43745.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	3.62340159122319	3.59604523121861	3.78636391873436	4.30789194074161	3.61879687153875	3.79894553975017	3.95728629198871	3.50157944640872	-0.437033120750533	0.408520556847581	0.70438176546703
Merged-chr18-41949368-4	chr18	41949263	41949463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029942, intron 1 of 6)	MTD|LTR|ERVL-MaLR	1831.0	NM_029942	77619.0	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding	5.54707052637843	5.33338226468466	6.05911634469654	6.06259055206315	4.70445682333529	4.82597568827904	5.41063884283697	5.43439744821395	-1.16460011256191	0.00133081985335326	0.0169639015655143
Merged-chr4-129049216-4	chr4	129049106	129049306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9065.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	6.10881760080472	6.01471099074598	6.31505822749281	5.71883159377753	6.13647954668333	6.36294642309816	5.81017796501918	6.06436053423385	0.104808534794727	0.696205060733432	0.877129405418782
Merged-chr18-14682289-4	chr18	14682232	14682432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009280, intron 1 of 10)	CpG	582.0	NM_001161369	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	5.6184388049265	5.40201274648152	6.11682620975598	5.58696872856977	5.34560603806979	5.34582835592877	5.14038905351099	5.66531490455416	-0.54041070593398	0.0832523675879355	0.313585173207387
Merged-chr10-8869093-4	chr10	8869021	8869221	+	831.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	16949.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.24515108754382	3.91104728764917	3.97544564678473	4.13622805541567	3.90521933600597	4.19572292585507	3.95909406433979	4.11560157211344	-0.0901957440430145	0.831467991758762	0.935425030262389
Merged-chr1-64198508-4	chr1	64198415	64198615	+	824.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77126.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	3.45995045275426	3.62773788799998	3.68084680434282	3.60188907578801	3.89785160386598	3.37932194718883	3.56150980364757	3.77600593382974	0.25805446690201	0.603299966457977	0.828026186791373
Merged-chr5-121836433-4	chr5	121836338	121836538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306126)	promoter-TSS (NM_001306126)	-334.0	NM_001306126	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	7.20826702707252	7.41778351070236	7.82055123450592	7.57227571164271	7.55523413293573	7.5724260903243	7.85251104130137	7.30599429277554	0.0805549776623462	0.702193996738427	0.8800483588732
Merged-chr10-79988653-2	chr10	79988553	79988753	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007725)	promoter-TSS (NM_007725)	53.0	NM_007725	12798.0	Mm.157770	NM_007725	ENSMUSG00000004665	Cnn2	AA408047|AI324678|Calpo2	calponin 2	protein-coding	3.13053586976839	3.32004839380826	3.32703142869027	3.43680655274747	3.46126602835041	3.66702653919682	3.53538663564092	3.64647312046563	0.8613921438918	0.0958852162722072	0.339181682190609
Merged-chr3-87987065-4	chr3	87986968	87987168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007529)	TTS (NM_007529)	13288.0	NM_007529	12032.0	Mm.4598	NM_007529	ENSMUSG00000004892	Bcan	Cspg7	brevican	protein-coding	5.79263828648961	5.83506596319346	5.30601461569483	5.51415653006922	5.89770915180048	6.01462440491752	5.91989123653274	5.83630142378495	0.478905673234156	0.0714853553304125	0.287001867395986
Merged-chr3-38565075-4	chr3	38564977	38565177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-80261.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	6.80768078740247	6.3732881205729	6.95643805100857	7.35621153104105	6.90902537815408	6.71868259932084	7.029786553976	6.97655790557485	-0.0304971293870101	0.905348442810863	0.964874095457733
Merged-chr2-166995449-4	chr2	166995359	166995559	+	820.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	840.0	NM_011490	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	3.88451238978988	3.4960730387477	3.83785396444305	3.17392681572686	4.13765642971188	3.80561324736226	3.49840286389923	3.78647923062614	0.62023838195853	0.254222040954674	0.565571827007563
Merged-chr5-143817716-4	chr5	143817618	143817818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-54144.0	NM_013557	15467.0	Mm.389709	NM_013557	ENSMUSG00000029613	Eif2ak1	HCR|Hri	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding	7.78047220282432	7.58642669954535	7.26502271793921	7.50581032817641	7.48896406186113	7.52914554793174	7.55220211903633	7.53122059329386	-0.028796496720816	0.875605893605533	0.9532510799291
Merged-chr8-94172134-1	chr8	94172034	94172234	+	630.0	f0_balb.idr	promoter-TSS (NM_008630)	promoter-TSS (NM_008630)	-484.0	NM_008630	17750.0	Mm.147226	NM_008630	ENSMUSG00000031762	Mt2	AA409533|MT-II|Mt-2	metallothionein 2	protein-coding	3.68793613825856	3.20502162461802	3.36868644800695	3.54014968473092	3.5804558160084	3.482443100026	3.47086464831888	3.63829195685807	0.26476318155776	0.605430485951759	0.828854779672177
Merged-chr7-110679995-4	chr7	110679905	110680105	+	832.270813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	52348.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	3.77743660552886	3.8646374666639	3.53417679892716	3.66884901152086	4.06947660955303	4.05923477660156	3.96656106472001	4.41933755796501	1.16187615807421	0.00915526777825931	0.0740778453096191
Merged-chr7-127992043-4	chr7	127991936	127992136	+	737.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023258, exon 3 of 3)	3' UTR (NM_023258, exon 3 of 3)	1831.0	NM_023258	66824.0	Mm.24163	NM_023258	ENSMUSG00000030793	Pycard	9130417A21Rik|Asc|CARD5|TMS-1|TNS1|masc	PYD and CARD domain containing	protein-coding	4.04403773145377	4.37202868903593	3.83421335516401	3.12954099352431	4.27618543774556	4.47867086416036	3.81852656531922	4.13585747283596	0.674040959970488	0.230811640936517	0.540320099488242
Merged-chr16-57223150-4	chr16	57223054	57223254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 1 of 17)	intron (NM_026254, intron 1 of 17)	8312.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	6.03081903538381	5.87759954027721	5.82765789871875	6.12251393051498	5.77276840177018	5.90273488105006	5.86942686430939	6.35681267416936	0.0171127707463625	0.94851350227365	0.981468586232336
Merged-chr15-64311910-4	chr15	64311818	64312018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	755.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	5.94375386148549	6.36886659074249	6.22365373716487	6.01139330039253	6.33724222452936	6.32017715761651	6.43460438343156	6.07681114345489	0.240096008136245	0.316766981381846	0.628743667727529
Merged-chr3-105948491-3	chr3	105948408	105948608	+	934.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304719, intron 8 of 9)	L2|LINE|L2	-10990.0	NM_027432	70465.0	Mm.5110	NM_027432	ENSMUSG00000000561	Wdr77	2610003I18Rik|2610312E17Rik|C79984|p44/MEP50	WD repeat domain 77	protein-coding	3.97332230152832	3.89661930555768	4.14863116261834	4.2562471288498	3.96762589086183	3.43501201205708	3.86058245100983	3.71332963268325	-0.883455466452511	0.068755748000635	0.280183511017187
Merged-chr4-141147132-4	chr4	141147019	141147219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172518)	promoter-TSS (NM_172518)	-803.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	5.65640883326894	5.29867138447739	5.20152974907072	5.60479131945701	5.31569247276414	5.5071423630554	5.42262358570134	5.57960065577837	-0.0194063355180018	0.946713807602702	0.98095209334417
Merged-chr8-90933145-4	chr8	90933055	90933255	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001310530, exon 1 of 38)	exon (NM_001310530, exon 1 of 38)	906.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	5.04528757011928	4.57022008083486	5.04615758577991	4.93075350436144	4.45129391306957	4.71424686978206	4.55993660958474	4.70112742162898	-0.646065960580946	0.0685555311526405	0.279616363005337
Merged-chr2-26327991-2	chr2	26327891	26328091	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355575, intron 9 of 13)	ORR1C2|LTR|ERVL-MaLR	8221.0	NM_001199147	67839.0	Mm.266611	NM_153410	ENSMUSG00000026930	Gpsm1	1810037C22Rik|AW107933|Ags3	G-protein signalling modulator 1 (AGS3-like, C. elegans)	protein-coding	2.95146242904412	3.31325399597969	2.95184678373888	2.56470038159025	2.77547030191386	3.5549748382001	2.80669376078954	2.66442160692651	0.0984931744658794	0.893100080801364	0.960067775059052
Merged-chr16-36709675-4	chr16	36709583	36709783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 3 of 7)	intron (NM_001285788, intron 3 of 7)	15705.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	7.35047798868673	7.6590912639871	7.52503878726612	7.15038152793094	7.45364490076662	7.72868160322169	7.49684570652514	7.23891910234688	0.0819774140982284	0.690682109055499	0.874049428217715
Merged-chr4-141953046-4	chr4	141952946	141953146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 12 of 31)	MER2|DNA|TcMar-Tigger	-29946.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	7.50259467911939	7.50518934753854	7.28523165855725	7.31173464111126	7.56279376573746	7.56645841967204	7.48488376417249	7.29096358755589	0.109429212598247	0.544802165228995	0.795521198272179
Merged-chr12-69538701-4	chr12	69538604	69538804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44324.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	5.80158302594401	5.83314564844595	5.5771936735094	5.7262711750139	5.64374801406332	5.48225162728311	5.67848420396573	5.65290166211643	-0.199761696053634	0.439517628813114	0.727375617328264
Merged-chr17-35025176-4	chr17	35024989	35025189	+	862.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023893)	TTS (NM_023893)	2927.0	NR_028258	78376.0	Mm.390966	NM_023893	ENSMUSG00000036185	Sapcd1	2810436B06Rik|G7d|Ng23	suppressor APC domain containing 1	protein-coding	2.73284732074755	2.64777288924681	2.59552996942181	2.48987000973444	2.84899152706266	2.84094591861168	2.90400617809188	2.96975617478315	1.36209178641637	0.029702556992952	0.166145249839004
Merged-chr11-50154398-4	chr11	50154287	50154487	+	890.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 10 of 20)	L1MB3|LINE|L1	-20464.0	NM_026543	68067.0	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	5.26013430564489	5.42325248546219	5.31540524505154	5.62565402564513	4.30777169226546	4.71863151862515	4.41320495636087	4.37675515869053	-2.01177334170148	9.9965809079305e-09	5.30213586025026e-07
Merged-chr3-8817033-4	chr3	8816966	8817166	+	817.270813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025434, intron 2 of 2)	L1_Mus3|LINE|L1	106791.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	3.9231953907455	4.33816251047857	4.67470053207872	3.65806246673115	3.93053584821775	3.87536046555878	4.05780965255141	4.02463119996009	-0.590673201487193	0.23545746042509	0.545471979677705
Merged-chr14-50834182-4	chr14	50834094	50834294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 41 of 54)	intron (NM_009351, intron 41 of 54)	26278.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	8.4115462301636	8.23497323721504	8.37570843189127	8.44485898950754	8.61678981507623	8.51511513206888	8.68627174630263	8.43332647022577	0.248409875620889	0.106252410641327	0.359240505270803
Merged-chr1-181888986-4	chr1	181888885	181889085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46584.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	6.18915194240522	6.11971319570726	5.7410605271818	5.88480995003811	6.44241986754549	6.75516645090408	6.19747499415007	6.51660373941625	0.754843284083131	0.0023084035838765	0.0261265477336215
Merged-chr6-131277249-3	chr6	131277144	131277344	+	758.361145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	16000.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	3.75512976729461	3.90671585594254	4.08192945352438	4.2673572278295	3.57500946268816	3.82071450997279	3.44816185101393	3.58404224112311	-1.25283400645588	0.0108789900325681	0.0838500954551342
Merged-chr8-31113313-4	chr8	31113235	31113435	+	893.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175136, intron 1 of 5)	intron (NM_175136, intron 1 of 5)	1489.0	NM_175136	68867.0	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	4.12100882899968	4.13905104977378	4.89029045999591	4.61339022802445	4.23412683600877	4.19457868928825	4.15552569187257	4.63295499278181	-0.386774313564483	0.380993364945121	0.683305836156047
Merged-chr10-9897141-4	chr10	9896978	9897178	+	908.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081344, intron 2 of 25)	intron (NM_001081344, intron 2 of 25)	3962.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	3.32307963876099	3.31693338743631	3.59355021889512	3.41635235856523	3.42810602237872	3.37339988357129	3.52950023370802	3.49052332405495	0.138877875026956	0.782767839852362	0.9153682078079
Merged-chr10-67097033-7	chr10	67096906	67097106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204915)	promoter-TSS (NM_001204915)	-18.0	NM_178606	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	5.36390223640069	5.73062666656403	5.64693007292337	5.50340225522787	5.53750111611426	5.74305201259678	5.54067457259224	5.66796022792033	0.0911755988636744	0.734474440842212	0.895054085885471
Merged-chr4-130829451-3	chr4	130829375	130829575	+	935.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36938.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	4.16806151432614	3.99378824723212	3.98740463916205	4.21894380954245	3.75510999135892	3.95335386346754	3.70434543004006	4.20752099573571	-0.509139219745839	0.255640135041054	0.567266551488207
Merged-chr5-88698816-4	chr5	88698718	88698918	+	757.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22053.0	NM_026735	68473.0	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	3.61138249344477	3.64080441340926	3.77982944915289	3.95294092569962	4.01611391463793	3.7880437233035	4.00072845635366	3.92615104230745	0.481837156152714	0.293305680283563	0.605875232443865
Merged-chr1-52799614-4	chr1	52799595	52799795	+	996.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008384, intron 1 of 5)	intron (NM_008384, intron 1 of 5)	17993.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	4.55340481884337	4.6239634525694	4.33216712886736	4.11175752615302	4.8638344406321	4.80505195552921	4.53299474541097	4.63017297156579	0.695841116976433	0.0654724404876748	0.272402550939455
Merged-chr2-73484808-4	chr2	73484719	73484919	+	888.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	934.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	4.13462123946307	4.14336786059827	4.76022059610197	4.44951016359087	4.15119521995593	4.20949062003254	4.25930972232048	4.36274519826862	-0.368830440093347	0.372509451528325	0.676285177888533
Merged-chr7-80457465-4	chr7	80457351	80457551	+	972.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042527, intron 21 of 21)	MIR3|SINE|MIR	-52015.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	4.75971704351959	4.64854967196391	4.32448001959558	4.81040299518949	4.54749207185805	4.73673407545548	4.73781710889319	5.16401840412478	0.31763538279904	0.397699569448691	0.69600358118087
Merged-chr5-63830875-4	chr5	63830791	63830991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	18396.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	4.24713606739484	3.89801209757781	4.15352912424807	4.462649127076	3.98851393639912	4.12336864930212	4.47342757713994	4.72909390196708	0.339862917782738	0.453781686703905	0.7376390379157
Merged-chr3-129671951-2	chr3	129671851	129672051	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	53135.0	NM_001310737	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	2.63660912901123	2.83921178366114	3.17710004716092	2.68170698995312	2.936007912689	3.23534614805798	3.49861178243838	3.05910070724697	1.43925225635657	0.0272642235777076	0.157317885394497
Merged-chr16-57336903-4	chr16	57336810	57337010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	-16367.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	7.83800580298289	8.0864348420253	7.89195135380607	8.16030615717455	8.0994211282554	8.01686192569876	7.99933696559373	7.79503771650862	-0.031065237187156	0.857809818139213	0.946392149155271
Merged-chr1-171123109-4	chr1	171123021	171123221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081275, exon 2 of 6)	5' UTR (NM_001081275, exon 2 of 6)	1460.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	6.58162790097215	6.83850172832364	6.3460252150698	6.38760860684075	6.78002155966515	6.00690596050146	6.19727914952832	6.51490782310583	-0.18748487460029	0.48267688291447	0.757421686487144
Merged-chr12-79015050-3	chr12	79014992	79015192	+	817.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7815.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	3.85769764371501	4.2756798122085	4.06459039527541	3.5737484576905	2.92583142088337	3.36194756091873	3.08397961414831	3.01168728777944	-3.4899823194723	9.89897613035564e-07	3.47093212799302e-05
Merged-chr7-78846520-3	chr7	78846439	78846639	+	912.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029585, intron 1 of 4)	intron (NM_029585, intron 1 of 4)	672.0	NM_029585	76375.0	Mm.250541	NM_029585	ENSMUSG00000030610	Det1	2610034H20Rik	de-etiolated homolog 1 (Arabidopsis)	protein-coding	4.09272909956805	3.22401416690684	3.88275153773898	3.80051371948579	3.63180429511848	3.69106200365061	3.55933077351227	3.73487498086034	-0.38849328876782	0.466147031997659	0.74629927630325
Merged-chr11-100319832-4	chr11	100319753	100319953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011508)	promoter-TSS (NM_011508)	-96.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	7.70844628109377	8.10031683932181	7.97045946402556	7.59228240822975	8.09955637038388	8.45358939976127	8.00591250808204	7.95817538798135	0.372459523756108	0.0627857765451311	0.265571000041947
Merged-chr2-32710600-4	chr2	32710498	32710698	+	966.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130860, intron 2 of 6)	intron (NM_130860, intron 2 of 6)	2186.0	NM_130860	107951.0	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	5.29340512852183	4.97171667669541	4.92624272176685	5.0084500097489	5.02880066196129	4.82764758452926	4.75298974423679	4.84970745931849	-0.346922239523335	0.287266639874266	0.598979176834825
Merged-chr2-84999646-4	chr2	84999571	84999771	+	975.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145526, exon 11 of 12)	exon (NM_145526, exon 11 of 12)	11456.0	NM_016914	53856.0	Mm.19943	NM_016914	ENSMUSG00000027072	Prg3	MBP2|MBPH	proteoglycan 3	protein-coding	4.56477027076371	5.0531239269123	4.91044409772931	4.8537254923102	5.39760527517683	4.92954851929148	5.56817284430114	5.29652010785871	0.87368228203998	0.00835821975585096	0.0692342283255808
Merged-chr18-39145375-4	chr18	39145266	39145466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 10 of 21)	intron (NM_001361073, intron 10 of 21)	152221.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	5.33534416258785	5.37883482800277	4.91881561440681	5.03861446538875	4.41700398675877	5.23734928745839	5.22506256430751	5.15684390618256	-0.261693584712839	0.479360378968195	0.755076401136965
Merged-chr11-106480725-4	chr11	106480624	106480824	+	906.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 1 of 21)	intron (NM_023913, intron 1 of 21)	7072.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	4.64542328951918	4.83826676317117	4.82841035367681	4.71985896426628	4.49292834927789	4.77942965635736	4.54442892663822	4.33515984986881	-0.469330400619629	0.186266910994711	0.484125681380109
Merged-chr19-4230613-4	chr19	4230517	4230717	+	935.6124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132308, intron 2 of 3)	intron (NR_132308, intron 2 of 3)	-1276.0	NM_027196	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	4.47440674947819	4.16775660360675	4.73909555265809	4.6331910076964	4.43477019565666	4.64753976742777	4.32378668128424	4.5134589508909	-0.0974072873725145	0.80039147885354	0.923040237917604
Merged-chr4-53117820-4	chr4	53117715	53117915	+	932.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	42080.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	4.50021912252573	4.42089615395836	4.17500773468219	4.57789378712547	4.54016447786014	4.45087008367717	4.89376716841712	4.72570580291834	0.498955851420028	0.187159629578595	0.485418862912653
Merged-chr11-95849968-4	chr11	95849849	95850049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	6704.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	5.85578111294296	5.35951697424541	5.39649354928832	5.72881437823618	5.85259156502375	5.44559204540093	5.54126505642619	5.56535536602481	0.022718552049753	0.937586058446957	0.977363579296412
Merged-chr10-10355758-3	chr10	10355658	10355858	+	764.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 30 of 36)	intron (NM_001127353, intron 30 of 36)	116556.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	3.48196514092425	3.74777341474169	3.42795685014088	3.39589079158678	3.15551451352016	3.36198669810612	3.35848504463256	3.42608954157534	-0.684875984412158	0.196765768619245	0.4979362662321
Merged-chr10-84087747-4	chr10	84087629	84087829	+	926.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152790, intron 1 of 4)	intron (NR_152790, intron 1 of 4)	12968.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	4.38165153532978	4.75169578998049	5.13610688468757	5.3382418037472	4.59721552159087	5.04480866549835	5.27728798077368	4.82899736868662	-0.014978975676691	0.970658546615675	0.98949297816832
Merged-chr11-121652707-3	chr11	121652601	121652801	+	879.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178664, intron 3 of 12)	intron (NM_178664, intron 3 of 12)	20450.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	3.43376966129061	3.40531972011206	3.43422918771433	3.37316143450281	3.45261363376751	3.49134085686351	3.24600724693562	3.58807667484151	0.141767579004939	0.778659037535228	0.913781420202775
Merged-chr6-13853448-3	chr6	13853357	13853557	+	797.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-13515.0	NM_145066	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	3.39505812229223	3.3219001669675	3.73437536682601	3.61655552499276	3.32872697316782	3.32910886248547	3.26777436253289	3.01040117492839	-1.02531232597145	0.0677873462068934	0.277838185299054
Merged-chr11-17159205-4	chr11	17159102	17159302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024459)	promoter-TSS (NM_024459)	-96.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	8.50530923552504	8.51601800719587	8.75699982831237	8.75419529475292	8.66158114343022	8.53182513414579	8.70098705765977	8.33183197587057	-0.0941367766667924	0.569758906515779	0.80955922161666
Merged-chr3-79419114-2	chr3	79419014	79419214	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142953, intron 2 of 4)	intron (NM_001142953, intron 2 of 4)	73738.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	3.14848882233437	3.3698162585713	3.20855520449001	3.06664543732265	3.07844512086181	3.13031871586201	3.4079403812616	3.20687661910729	0.0436375553143016	0.937482352597717	0.977342790666601
Merged-chr8-83738907-2	chr8	83738780	83738980	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	B1_Mur2|SINE|Alu	2431.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	3.66021300298328	3.6674105589215	3.96208215086236	3.26696898650601	3.62953723816567	3.78160217671434	3.85205144859134	4.1652428596523	0.640891143368573	0.210843258703319	0.515475385416391
Merged-chr7-99147107-4	chr7	99147001	99147201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-5957.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	7.22509360396423	7.21383421164032	6.90461724988668	7.03533768924241	7.3977673127538	7.44596647490722	7.3044219292748	7.23215110965916	0.338733971933154	0.0700688464177082	0.28332843374232
Merged-chr13-64154129-4	chr13	64154014	64154214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175494)	promoter-TSS (NM_175494)	-915.0	NM_175494	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	6.01614740246665	6.27931025569269	6.12934329843024	6.39724245761641	6.51484675777234	6.32779480378229	6.60144257457981	6.52593301196098	0.39715587971212	0.0823988622151467	0.311633450236458
Merged-chr11-6476139-4	chr11	6476045	6476245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011221)	promoter-TSS (NM_011221)	-69.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	6.52915817068139	6.63553103447978	6.53030953064672	6.61758240548472	6.97570867198599	6.912254582105	6.92708239413262	6.84273153505808	0.47359534137806	0.0149255599337724	0.104460249322009
Merged-chr18-38962518-1	chr18	38962418	38962618	+	877.5	f0_balb.idr	intron (NM_001033789, intron 4 of 4)	intron (NM_001033789, intron 4 of 4)	-30627.0	NM_001361073	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	3.82118547386416	3.9717959025309	4.44476366523452	4.12918359371316	3.41513536257561	3.88878868084843	3.6369497242577	3.92241169976907	-1.10780498034045	0.025674568119173	0.151132160449439
Merged-chr8-94227486-4	chr8	94227392	94227592	+	882.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172410, intron 2 of 22)	intron (NM_172410, intron 2 of 22)	12928.0	NM_172410	71805.0	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	4.16984393481249	3.79119169391207	3.88932279723647	4.14607605157	4.02572083780732	3.89985330797739	3.97325317875896	4.12517643051731	-0.0196210559647496	0.963920135637249	0.987192577581959
Merged-chr5-103474446-4	chr5	103474349	103474549	+	925.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011204, intron 2 of 47)	intron (NM_011204, intron 2 of 47)	49257.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	4.83381380577692	4.16827093988557	4.2362244489249	4.83422006989399	4.62130254637889	4.65972301218028	4.90869079405186	4.99131031119206	0.490825326239077	0.227743016756584	0.536465946363434
Merged-chr16-85148766-4	chr16	85148684	85148884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	24923.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	6.81377998421684	6.8041129838957	7.12570234093643	7.01041243944519	7.65002467740405	7.6642778587737	7.73661962398139	7.35974286828759	0.893227431269766	3.79212268024209e-06	0.000116194360851034
Merged-chr3-101600426-4	chr3	101600321	101600521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	4286.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	6.54189201164211	6.34962208598426	6.37228652047918	6.70415933203861	6.4109116584936	6.30967763454304	6.42753876747517	6.71654018984629	-0.0564196622599903	0.805441950775366	0.925178766347246
Merged-chr9-85748455-2	chr9	85748368	85748568	+	942.75	f0_balb.idr|f0_c57.idr	intron (NM_175371, intron 1 of 27)	intron (NM_175371, intron 1 of 27)	866.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	4.65230621085168	4.71220341658219	4.06322515404259	3.94123753880355	4.70332590984939	4.67167291425686	4.66610980796218	4.27173087732946	0.474725468235046	0.276776611042391	0.588783096156196
Merged-chr10-62503353-5	chr10	62503229	62503429	+	913.4381099999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	B2_Mm2|SINE|B2	4428.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	3.79599609766402	3.70076036621742	4.03878725548456	3.53361923699028	3.89455846364047	3.86265836125454	3.97605770394956	4.121379533565	0.575261749758242	0.208104670594147	0.512289173683755
Merged-chr4-139490918-4	chr4	139490827	139491027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39621.0	NM_183148	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	4.78796624495081	5.21484640811838	4.96665473464795	4.92951463821358	4.36208560947304	4.41493897888453	4.87467199270114	5.14791565319857	-0.502557856075251	0.192080518930462	0.491589934451005
Merged-chr10-60835070-4	chr10	60834931	60835131	+	970.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3450.0	NM_001359273	107449.0	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	4.18710748267363	3.97475387167381	4.18775090540593	3.88830822199501	4.25525118976574	4.48662361822057	4.33724773186739	3.98956259929076	0.569950115442537	0.169441784420112	0.462060254893845
Merged-chr16-50457177-4	chr16	50457096	50457296	+	915.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24730.0	NM_001347240	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	5.01773887269959	4.69904885701581	5.08260670699777	5.09645425873361	5.10968973620987	4.77330563150951	4.96117462770018	4.7618823920771	-0.134475785963942	0.687827730445164	0.872520851606721
Merged-chr5-100040453-1	chr5	100040353	100040553	+	1000.0	f0_balb.idr	intron (NM_001163035, intron 1 of 6)	intron (NM_001163035, intron 1 of 6)	459.0	NR_027990	67870.0	Mm.11311	NM_026421	ENSMUSG00000029326	Enoph1	2310057D15Rik|BB183658|C81437	enolase-phosphatase 1	protein-coding	4.40771877006277	4.61616505034115	5.06135425424716	4.59769809627505	4.59800632651872	5.10628487173195	4.97497657536943	4.86343210328732	0.419712920073748	0.254052914948063	0.565366028860034
Merged-chr2-59055910-4	chr2	59055811	59056011	+	907.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	L1MA9|LINE|L1	104772.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	4.10548261126871	4.15409822344427	4.00196051306265	4.42603539871603	4.48409270693912	4.1790622587679	4.39537335531379	4.33204556425589	0.377367735294466	0.357091934429637	0.663325163389815
Merged-chr5-25498111-4	chr5	25498001	25498201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081383, intron 1 of 58)	CpG	682.0	NM_001081383	231051.0	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	5.12186751888282	4.98493326197445	5.55621818485642	5.37471873404344	5.21737522604039	5.19291828439922	5.37317661650632	5.42382637890819	0.0383821102564571	0.900518599337175	0.963161804192488
Merged-chr12-100184283-4	chr12	100184194	100184394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-3674.0	NR_045282	100038378.0	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	-	predicted gene 10433	ncRNA	8.55915101020303	8.59229810890545	8.84751566526097	8.69665056916887	8.64977665738471	8.70379233740339	8.83417664770319	8.80313438386673	0.0869317853589406	0.566928481888824	0.808119800518362
Merged-chr11-23124583-4	chr11	23124484	23124684	+	913.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCCCG)n|Simple_repeat|Simple_repeat	-27556.0	NR_131065	76993.0	Mm.59224	NR_131065	ENSMUSG00000086366	1700061J23Rik	-	RIKEN cDNA 1700061J23 gene	ncRNA	4.51524773073575	4.70813658430194	4.93122939306088	4.57940042438702	4.98693779388035	4.55486587986383	4.53916701229047	4.89529079493355	0.177621016076677	0.623924398707341	0.839195335242146
Merged-chr15-62096829-4	chr15	62096732	62096932	+	852.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	57575.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	4.05385408554407	4.01961772208806	4.27605052253554	4.11573397877741	4.05997530344284	3.96584661335242	4.12953841792066	4.18936682202152	-0.0769615077554823	0.850545327295375	0.943633424218446
Merged-chr3-27690289-4	chr3	27690198	27690398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	intron (NM_001356953, intron 1 of 26)	20154.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	7.27549428948148	7.31739774701985	7.38096025721728	7.61342278464501	7.6147733174451	7.47548814459608	7.29346172876807	7.28249128704714	0.0203078842443727	0.916240927786575	0.968921139801819
Merged-chr12-14056326-3	chr12	14056226	14056426	+	873.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95712.0	NM_029007	105005.0	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding	3.2247635085067	3.28836245385414	3.10999850758764	3.44357087918614	3.04392801834682	3.02207387515503	3.15718246020214	2.91436005722056	-0.979764406615718	0.0933554118596277	0.334202326648717
Merged-chr11-82561725-4	chr11	82561619	82561819	+	936.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-71634.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	4.53084812823923	4.43951570072541	4.36351111748016	4.23564918124536	4.41266175234361	4.58050900508907	4.43003293649295	4.60490329280933	0.279708769371385	0.447806494305356	0.73332468018769
Merged-chr16-65423010-1	chr16	65422910	65423110	+	713.0	f0_balb.idr	Intergenic	Intergenic	-97619.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	3.92408967371652	3.90825485184142	3.83394821651347	3.67390608832754	3.76610816743446	3.43497463451927	3.44167225566537	3.62826720763562	-0.762639476859515	0.122783553640569	0.388375352823269
Merged-chr6-43640757-4	chr6	43640601	43640801	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 2 of 8)	intron (NM_013861, intron 2 of 8)	25577.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	4.41653944675736	4.56116935687956	4.57475438258788	4.76335409716162	4.27119045518376	4.3150241911441	4.17082936802597	4.08200694970733	-0.908243925270479	0.0190150892635985	0.123657221236359
Merged-chr1-106759034-3	chr1	106758928	106759128	+	993.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027534, intron 1 of 9)	intron (NM_027534, intron 1 of 9)	714.0	NM_027534	70750.0	Mm.458911	NM_027534	ENSMUSG00000009905	Kdsr	6330410P18Rik|9430079B08Rik|Fvt1	3-ketodihydrosphingosine reductase	protein-coding	4.52023201738517	4.10152783423821	4.62582435036293	4.34787924408091	3.78946418375549	3.9325315849609	4.12336848178948	4.48097367749424	-0.757151530760534	0.0921522286321272	0.331998961472196
Merged-chr6-71981582-4	chr6	71981460	71981660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60968.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	6.80232076304102	7.05497152685947	6.50937876987212	6.81357593170028	6.50800216098993	6.95174467081473	6.80947378449389	6.43304910551077	-0.1800649802939	0.439495191341777	0.72737230804772
Merged-chr13-4663042-4	chr13	4662960	4663160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53896.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	7.64434264673438	7.63393529861249	7.10343389126803	7.78495277442554	7.87424520661433	8.09371891965327	8.07044871091576	7.83943377712745	0.515212759726319	0.0108987662410971	0.0839479799020724
Merged-chr12-85364700-5	chr12	85364610	85364810	+	846.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 1 of 4)	MTD|LTR|ERVL-MaLR	10007.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	3.53969406906199	3.66086075883152	3.42942346352393	3.30547503649972	3.7054409323897	3.35576020739413	3.62656965970346	3.36862912153469	0.157147501176257	0.760986251458656	0.906441762347101
Merged-chr9-44522132-4	chr9	44522050	44522250	+	976.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007551, intron 1 of 1)	intron (NM_007551, intron 1 of 1)	4271.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	5.23700852569801	5.28759121206746	4.99150897887529	5.06823507284457	5.31945878785842	5.88370728584493	5.2119886763103	5.51978018735445	0.63328774081077	0.0419627162435538	0.207536421588376
Merged-chr6-140815919-4	chr6	140815820	140816020	+	888.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	189035.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	4.02633210168541	4.05887757465953	4.31860323715629	4.2056452098285	4.59656956573167	4.35546329263122	4.49796962276234	4.35863862308033	0.721534574296235	0.0613421195946319	0.262049617730543
Merged-chr6-122935047-4	chr6	122934956	122935156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_199311)	TTS (NM_199311)	13208.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	6.24469072861802	6.34901198681061	6.41776503289117	6.18991805949246	5.99999371974846	5.9879333065086	5.99382411241944	5.77918851063514	-0.541914070075967	0.0208945219148845	0.131872248072966
Merged-chr6-53390604-4	chr6	53390516	53390716	+	957.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 4 of 10)	L4_B_Mam|LINE|RTE-X	103313.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	4.87653103110008	5.09711853067152	5.39933951337215	5.54788965888913	4.65909832291347	4.71591670589151	4.73604220476144	5.01748823610191	-0.950015642235271	0.00657295019029698	0.0580466528033683
Merged-chr3-8974012-4	chr3	8973923	8974123	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-9877.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	4.4909246481379	4.20942117216755	4.58666782748649	4.4845422981226	5.36939149744985	4.57900374175719	5.40565544322722	5.74298135534423	1.74951283527408	7.49067131169087e-06	0.000212922130874776
Merged-chr2-166662978-4	chr2	166662896	166663096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	50836.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	6.08612811668391	6.26643278664408	6.57806577789174	6.34957898309775	6.50190015503868	6.04996481216923	6.48305271420169	6.51173304675474	0.110883428495611	0.644323157957258	0.850166542555413
Merged-chr2-52998110-4	chr2	52998021	52998221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	140253.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	7.80524119681889	8.00508123117105	7.80655161931558	7.34777043856801	7.5116656109754	7.84263473146011	7.56833629881627	7.14296714089609	-0.286802232548586	0.203003774653827	0.505600152160438
Merged-chr18-11835148-4	chr18	11835040	11835240	+	873.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045421, intron 1 of 3)	intron (NR_045421, intron 1 of 3)	-4134.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	4.52135734517515	4.11840709885427	4.68512317400737	5.2575356974618	4.49178885407452	4.65480750200441	4.73656521075107	4.71968767377387	-0.17227794765214	0.693242860597243	0.875262817171833
Merged-chr18-34262983-4	chr18	34262871	34263071	+	929.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360980, intron 2 of 16)	intron (NM_001360980, intron 2 of 16)	15277.0	NM_001360979	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	4.50026017114188	4.79081814794601	4.62408314670187	4.51443609834665	4.70904777864082	4.44516931070524	4.7487086341324	4.54043694151717	0.0319876262001536	0.928421019729539	0.973987527647112
Merged-chr6-85915997-6	chr6	85915863	85916063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023160)	promoter-TSS (NM_023160)	-8.0	NM_001362065	69786.0	Mm.218434	NM_176842	ENSMUSG00000054226	Tprkb	0610033G21Rik|1810034M08Rik|Cgi-121|DRWMS1|mDRWMS1	Tp53rk binding protein	protein-coding	5.96729455966469	6.55064780498328	6.27309365174198	5.35133553613503	6.42924844639014	6.72628828874508	6.62037287220017	6.93029672016406	0.866272159267829	0.00508140258725366	0.0480841737248243
Merged-chr11-40694951-4	chr11	40694798	40694998	+	951.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001199274, exon 1 of 7)	5' UTR (NM_001199274, exon 1 of 7)	305.0	NM_001199274	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	4.36821193733184	4.19051958694735	4.49680070014051	4.81762241564609	4.43855711274045	4.30293553984553	4.30442272361537	4.74961440072898	-0.101516451697987	0.804749790856357	0.924995726566622
Merged-chr7-80375604-4	chr7	80375527	80375727	+	881.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4252.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	3.75442476369451	3.51983454735232	3.64509936638999	3.86269565732678	4.03598193858716	3.81946544303732	3.88706445039623	3.90158855990629	0.587020534787146	0.200938043574425	0.503065263001114
Merged-chr11-3267268-2	chr11	3267168	3267368	+	663.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007879)	promoter-TSS (NM_007879)	-805.0	NM_007879	13494.0	Mm.3250	NM_007879	ENSMUSG00000020457	Drg1	AA408859|AI132520|DRG-1|NEDD-3|Nedd3	developmentally regulated GTP binding protein 1	protein-coding	3.0390132429208	3.103360014862	3.22107788429486	2.93118567085596	3.03461984156789	3.44465829095432	3.09161193833684	3.27451958769387	0.569556865893855	0.316298992118488	0.6282290917209
Merged-chr1-105665211-4	chr1	105665093	105665293	+	911.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173187, intron 1 of 28)	intron (NM_173187, intron 1 of 28)	1332.0	NM_029349	227446.0	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|Relch|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	4.87568734059024	4.84309450514441	4.84038051920682	5.02727282692422	4.99954473459606	4.86013436438472	4.62187324533661	4.83717723565796	-0.130346624449037	0.693759795306703	0.875550716931276
Merged-chr11-98027045-4	chr11	98026965	98027165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009078, intron 1 of 5)	CpG	141.0	NM_009078	19921.0	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	6.04469003294261	6.31577203723732	6.16742213393022	5.64121023916052	6.05057962718185	6.28306777911637	5.92719967760738	6.06253001616679	0.0528367288838911	0.844901319636335	0.941218991545198
Merged-chr11-44478645-4	chr11	44478570	44478770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER68|LTR|ERVL	-8122.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	5.28157487483336	5.4709358777087	5.43590530343409	5.25411263790046	5.76904081598438	5.89150179596312	5.46483786706813	5.27884064348789	0.466051222909794	0.110430840725949	0.366978089078026
Merged-chr7-110389058-4	chr7	110388955	110389155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	167352.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	5.09881460410868	5.28342764844793	5.43910468408447	5.21714741458423	5.28685438256642	5.34408022858687	5.20809535101377	5.56361942251715	0.168195254795328	0.564103245689455	0.806595117013454
Merged-chr5-43855976-4	chr5	43855863	43856063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12846.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	7.25472428892659	6.88579172618973	8.21045122365288	7.8869921587721	7.34794734277743	6.94378717751923	7.28380779571067	7.15953917652363	-0.625965177744267	0.0290512192832344	0.16386692585477
Merged-chr11-3332333-4	chr11	3332209	3332409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178149, intron 3 of 5)	CpG-1656	1578.0	NM_178149	216505.0	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	6.53198084752664	6.65231195219575	6.37256756273139	6.89071771621536	6.60368077165674	6.72632024859904	6.61141717601474	6.79866751783985	0.0556164202482489	0.803334489303457	0.924115094933912
Merged-chr2-131502719-4	chr2	131502629	131502829	+	882.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177840, intron 1 of 3)	intron (NM_001177840, intron 1 of 3)	10867.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	4.36587395282484	4.28717709657017	4.14595024293966	4.52988403512911	4.30046454214886	4.11592210752205	3.9771628749697	4.23623011502364	-0.450862479442182	0.269810726347269	0.58159527847952
Merged-chr8-72421588-4	chr8	72421503	72421703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289859)	promoter-TSS (NM_001289859)	-129.0	NM_001289859	13859.0	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding	8.76801852803312	8.87066645804446	8.62507899714342	8.55896941466405	8.85323373941243	9.06943220819321	8.82490588747019	8.79241461077887	0.224511728333092	0.154336853445478	0.439562375616025
Merged-chr14-122814341-4	chr14	122814244	122814444	+	843.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 22 of 24)	intron (NR_153443, intron 22 of 24)	-98686.0	NR_155287	105245866.0	Mm.390754	NM_001039531	ENSMUSG00000075463	Gm15735	4930594M22Rik|F930011C10Rik	predicted gene 15735	ncRNA	4.15450468750012	4.22003963948988	4.11220855925147	4.15975878271491	3.98713120778918	3.48367798053332	4.00423386821834	3.70233865828429	-0.93833423964469	0.0447430180842022	0.216077297253235
Merged-chr2-117342279-4	chr2	117342156	117342356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 1 of 16)	intron (NM_011246, intron 1 of 16)	621.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	6.15618366546829	6.69357126755923	6.09115965457571	6.12587022279129	6.80174188518095	6.73444652906916	6.67192450600819	6.17415030909839	0.485994479536272	0.0646418441242344	0.270289715262814
Merged-chr2-167716046-4	chr2	167715927	167716127	+	884.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24850.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	3.45016677150478	3.54941513960722	3.65624539080343	3.28108396614379	3.28198770578175	3.44811300512032	3.38094931725405	3.55550663694123	-0.224863942313973	0.664929528233175	0.861125832432654
Merged-chr14-19977151-4	chr14	19977078	19977278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285911)	promoter-TSS (NM_001285911)	71.0	NM_001038637	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	5.75910665195067	5.66918403331784	6.05593786262193	6.2733341844242	5.78144066327055	5.98639357964273	6.00461787617437	5.87804265590549	-0.111554622271534	0.681904218859383	0.869647747559641
Merged-chr17-43606919-4	chr17	43606792	43606992	+	829.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 9 of 11)	B3A|SINE|B2	-15383.0	NR_045444	73504.0	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	3.57442243038858	3.89511553351916	3.69009738635153	3.65933186069634	3.79543756132327	4.01525728007098	3.82955049291831	3.84359840594075	0.47000963337359	0.297980270478581	0.610164772946546
Merged-chr16-95658992-4	chr16	95658894	95659094	+	752.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43413.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	3.70339998985666	3.31884120678049	3.43151473184176	3.49651561302918	3.71533174567848	3.7719686735234	3.63869135683348	3.59972553975856	0.604288052087263	0.211419823667277	0.516036335944486
Merged-chr7-123211086-3	chr7	123210987	123211187	+	872.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3779.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	3.54294676507776	3.26626051761281	3.32219684940262	3.415496084254	3.56241695296238	3.49462809429075	3.47759793865793	3.37940834993355	0.313049567543747	0.533964908713536	0.789042708189764
Merged-chr6-127272828-4	chr6	127272721	127272921	+	844.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35146.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	4.06346505594815	3.94564776603006	4.11248217998523	3.81654586151422	4.06845508294885	3.91441498933116	4.65401233528267	4.36702179397712	0.766616879639127	0.0822489994343733	0.311342069813824
Merged-chr7-96977420-4	chr7	96977334	96977534	+	972.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153591, intron 5 of 13)	intron (NM_153591, intron 5 of 13)	25907.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	5.01038675327756	4.64738216301188	4.64109030722594	5.09636922772439	5.58990373138442	5.18776729020409	5.35452136723669	5.48061621014628	0.99119790745905	0.00272411296470708	0.0296210871852865
Merged-chr17-25184518-4	chr17	25184425	25184625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183150)	promoter-TSS (NM_183150)	-36.0	NM_183150	214489.0	Mm.274433	NM_183150	ENSMUSG00000067722	BC003965	Ccsmst1	cDNA sequence BC003965	protein-coding	6.82665641625676	6.79137210944975	6.58271919292099	6.58674803873061	7.12918771618621	7.01826368600119	6.80694735900354	7.14074440174956	0.475708414616887	0.0191534821094171	0.124301389447788
Merged-chr14-31436141-4	chr14	31436033	31436233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011894)	promoter-TSS (NM_011894)	-33.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	8.44992316198884	8.68282106166286	8.31276061656378	8.34331159957912	8.39093427710087	8.45602190280117	8.59857880071879	8.18991757492441	-0.0480567557371442	0.781078924377108	0.914775845041434
Merged-chr3-96572127-4	chr3	96572026	96572226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5325.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	6.42956641807657	6.66570787437604	6.66279541001658	6.65938973083322	6.71452983893419	6.67832116540254	6.8866627182851	6.54740160649659	0.143354265063601	0.491436959516649	0.763022235002085
Merged-chr3-84582200-3	chr3	84582132	84582332	+	980.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293801, intron 1 of 7)	intron (NM_001293801, intron 1 of 7)	393.0	NM_001293801	99889.0	Mm.316536	NM_001081093	ENSMUSG00000074513	Arfip1	2310030I10Rik|Arfaptin|D3Ertd598e	ADP-ribosylation factor interacting protein 1	protein-coding	4.42420939525954	4.62624298616979	4.33750516507219	4.37270070891199	4.20294462327197	4.15998988409758	4.22550782320651	4.90622593089092	-0.0739486331702266	0.860233831069358	0.947128143348069
Merged-chr19-24279842-1	chr19	24279742	24279942	+	703.0	f1_c57bl6.idr	intron (NM_008044, intron 1 of 4)	MIRb|SINE|MIR	744.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	3.04518905029629	2.99014371574136	3.15690500824098	3.10117021025024	2.85750757972783	3.031485329075	3.03414484386548	2.7157812737891	-0.696791345609775	0.251160953367137	0.562518029631524
Merged-chr8-120742721-4	chr8	120742610	120742810	+	978.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 2 of 8)	intron (NM_001301811, intron 2 of 8)	4071.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	5.89827464308631	5.43802915673308	6.12314677513641	6.25886874687113	5.29870586784637	5.27559833752403	5.89094479363432	6.19104167728271	-0.401941241895029	0.245849245102563	0.557036556331541
Merged-chr1-131990621-4	chr1	131990528	131990728	+	893.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16977.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	4.09330985423983	4.41187454283621	4.23625569182507	4.60169130611473	4.35994514388601	4.31631157103481	3.91912788765088	3.98736266052137	-0.484586821729561	0.26340985709374	0.575412785970885
Merged-chr7-35151039-4	chr7	35150962	35151162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31769.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	7.06433382036332	6.98032514012074	7.21490639804669	7.23156286683016	7.1627353094839	7.1278964306949	7.17879520580738	7.15453766806372	0.0325310395285323	0.860033359901623	0.947107828953935
Merged-chr10-7955908-3	chr10	7955799	7955999	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_138667, exon 1 of 7)	5' UTR (NM_138667, exon 1 of 7)	224.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	5.73296120001311	5.39604523067971	6.03537805368665	5.14258238838952	5.36311802432896	5.34933898667951	5.45531165402735	5.20131665466877	-0.451440932735504	0.171714876902199	0.465087374685055
Merged-chr2-114233298-4	chr2	114233197	114233397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31865.0	NM_175466	228491.0	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	4.90860255515546	5.09043499471892	4.79474949072673	5.14829441567966	5.19225707859691	4.75878134111108	4.92181944069819	5.13901582015443	0.0334497977099614	0.919259922854002	0.970285021467879
Merged-chr13-81785828-3	chr13	81785779	81785979	+	945.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007684, intron 2 of 4)	intron (NM_007684, intron 2 of 4)	2632.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	3.71858629866152	3.43467143656487	3.82019151685688	4.09535363588176	3.84650540419647	3.72611072866704	3.65126356239207	3.71702429295816	-0.188601804792238	0.705706920692174	0.881811546028163
Merged-chr10-10556780-2	chr10	10556680	10556880	+	952.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	1427.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	2.88490435153403	3.03545321096366	3.50252517696317	3.07035267395125	2.98266137477073	3.25738218786495	3.07359977512949	3.14335918470095	-0.0991471711568618	0.868640713549468	0.950762137632278
Merged-chr5-113592039-4	chr5	113591932	113592132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41612.0	NM_177292	320916.0	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	6.68979434322391	7.17699304416705	6.83022321582238	7.05201870752661	7.37075277048771	7.57440658397988	7.18187739137578	7.01534455488754	0.468164625365661	0.0322816508145074	0.175872607985137
Merged-chr10-67960113-3	chr10	67960003	67960203	+	890.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0-int|LTR|ERVL-MaLR	13605.0	NR_152797	75067.0	Mm.416933	NR_152797	ENSMUSG00000112899	4930521O17Rik	-	RIKEN cDNA 4930521O17 gene	ncRNA	2.91493629557735	2.83179019170005	2.91523992528088	2.32409747369986	3.82805586704263	4.37278422821628	4.02441825128711	4.26631370910307	8.00780095002528	2.54200679973848e-16	5.11122887001653e-14
Merged-chr1-171437517-4	chr1	171437459	171437659	+	868.408325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151523)	promoter-TSS (NR_151523)	-2.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	4.82338399418704	4.04759976981805	4.11419743182392	4.33427581017939	4.50613514229609	4.65011009024457	4.14819085790947	4.26072294032778	0.101909806209156	0.815070027569906	0.928708522466333
Merged-chr17-35178775-4	chr17	35178710	35178910	+	795.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2758.0	NM_001361501	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	3.34681297154926	3.63951368270641	3.66818434757456	3.28595804784072	3.4508513394919	3.33222432790417	3.5035297036707	3.51573491149958	-0.115986927126248	0.822958062349133	0.932185203682946
Merged-chr5-19897264-4	chr5	19897159	19897359	+	891.229126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 2 of 22)	intron (NM_001170746, intron 2 of 22)	-10259.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	4.74251969524677	4.61435415133583	5.03843838235403	5.09240377894576	5.26443048584989	5.14409636746901	5.16730296283869	4.74021899849542	0.387631340866877	0.262468611406236	0.574255472636538
Merged-chr15-38662530-3	chr15	38662375	38662575	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025494, intron 1 of 12)	intron (NM_025494, intron 1 of 12)	571.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	4.87988941065866	4.7320003361123	5.08350318233815	5.00360126062784	4.97243076965222	4.77412937490267	4.92812587201543	5.14089578309865	0.0550743537441519	0.865349101657509	0.949604543216002
Merged-chr14-26637271-2	chr14	26637171	26637371	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007479)	promoter-TSS (NM_007479)	-863.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	3.43581914265118	3.76436759684284	3.43624491149862	3.33692677918764	3.69618066715999	3.82944438673112	3.48265066911736	3.75611932751967	0.627770796969015	0.206077871103962	0.509962879506126
Merged-chr18-75716338-4	chr18	75716248	75716448	+	823.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18652.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	3.78831117433842	4.04161742960834	4.04616910402819	4.06505558727936	3.96004611678803	4.01909336687865	4.16002555290833	4.04372990816874	0.127258159477573	0.76253005764183	0.906975368428852
Merged-chr9-16046873-4	chr9	16046811	16047011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 3 of 24)	intron (NM_001080814, intron 3 of 24)	-172355.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	6.91935423235709	6.8498891154039	7.4636659368827	7.32468643889577	6.33045682983067	6.65804921793319	6.40906145528043	6.54521016107655	-0.968259431082028	3.3984132823521e-05	0.000806997447765826
Merged-chr4-87826555-4	chr4	87826464	87826664	+	962.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027326, intron 5 of 10)	intron (NM_027326, intron 5 of 10)	-20241.0	NM_029931	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	4.74938018378026	4.78341347391667	5.12009209234812	5.31845745424679	5.50935869542442	5.40210786567293	6.01609200035841	5.95409709447266	1.24298968377885	0.000290344035844076	0.00494174991089084
Merged-chr2-73214443-4	chr2	73214334	73214534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025942)	promoter-TSS (NM_025942)	13.0	NM_030091	67059.0	Mm.22661	NM_025942	ENSMUSG00000027108	Ola1	2510025G09Rik|2810405J23Rik|2810409H07Rik|Gtpbp9|PTD004	Obg-like ATPase 1	protein-coding	7.74611803982671	7.88134227228345	7.71497456637739	7.96129160458112	7.67532816391052	7.66828799182838	7.96838919525848	7.76593802780467	-0.0831851280382462	0.632391304914806	0.843887901997206
Merged-chr2-130731420-4	chr2	130731336	130731536	+	913.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029432, intron 27 of 36)	L2a|LINE|L2	-33917.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	5.29172109880389	5.28579563693786	4.85512268246401	4.16699433626506	4.93463212572219	4.69976198124014	5.12718529884909	4.77510567163363	-0.14886804149202	0.72475279504158	0.890443127419511
Merged-chr5-105052302-4	chr5	105052204	105052404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029509, intron 1 of 9)	intron (NM_029509, intron 1 of 9)	1257.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	5.92846321804102	5.94405833230493	5.35247715844811	5.90539940398913	5.97637278156192	6.14699430633542	5.85451601555582	5.88032059906118	0.246253225704321	0.359761939549377	0.665458150650584
Merged-chr18-39801315-4	chr18	39801207	39801407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27810.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	6.61282537313962	6.75047560244461	6.98594281498499	6.98514110404347	6.93628856230701	6.99039457535438	7.03412692276708	6.95601049354943	0.174648761034584	0.384997440320464	0.686431862245637
Merged-chr2-153694639-1	chr2	153694539	153694739	+	673.0	f1_balb.idr	Intergenic	Intergenic	45190.0	NM_001271747	13436.0	Mm.89772	NM_010068	ENSMUSG00000027478	Dnmt3b	MmuIIIB	DNA methyltransferase 3B	protein-coding	2.70002312036919	2.54747696102648	2.35880892431709	2.33050359688623	2.40917385824731	2.68136961435576	2.62880208943803	2.81375804549652	0.787094713333337	0.265781321383129	0.577438760598551
Merged-chr1-34013551-4	chr1	34013454	34013654	+	961.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134448, intron 1 of 97)	intron (NM_134448, intron 1 of 97)	1729.0	NM_134448	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	4.70673296002714	4.81684724132705	4.88944341408811	4.64313178582351	5.02342776759919	4.71757774245627	4.38123017469585	4.88612836482078	0.0511248350923457	0.887060710298971	0.957632641284625
Merged-chr10-30710380-4	chr10	30710283	30710483	+	660.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 3 of 14)	intron (NM_001358842, intron 3 of 14)	-54516.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	3.64809459487744	3.3627187453518	3.59412716064777	3.43714325965079	3.8761087401501	3.76712080492518	3.87311860768237	3.64654235476056	0.900224965239749	0.0553026801744712	0.245901391313012
Merged-chr10-80932869-4	chr10	80932792	80932992	+	993.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008655)	TTS (NM_008655)	2801.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	5.65555647095656	5.96446304189092	5.89410127419771	4.77581262865152	6.01867494813761	6.21048064007598	5.54730582358846	5.32772160501237	0.290821083734508	0.44467282990317	0.731044175244865
Merged-chr6-97929520-3	chr6	97929413	97929613	+	883.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001178049)	promoter-TSS (NM_001178049)	-304.0	NM_001178049	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	3.03007321227052	2.98298075020314	3.49177776309482	3.38598316615978	2.81898268699137	2.78644657462834	3.13591853018573	2.75641376746075	-1.53832608745763	0.0209239859966264	0.132022728415377
Merged-chr14-31206762-4	chr14	31206649	31206849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022656)	promoter-TSS (NM_022656)	77.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	6.41534849622888	6.31174237029709	5.9010509025464	6.31711814285249	6.13101315419157	6.21631702646715	5.96483442418736	6.03572820019665	-0.254032999754838	0.294284544511137	0.60657572738419
Merged-chr13-45269071-3	chr13	45268957	45269157	+	924.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120685.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	3.36790453568441	3.1480765156229	3.47901851024991	3.71920124224011	3.32506528099645	3.35924764290967	3.29757769375736	3.62658417750511	-0.170675593844928	0.75791903531325	0.904923493937229
Merged-chr1-143777181-4	chr1	143777078	143777278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013835)	promoter-TSS (NM_013835)	-100.0	NM_001159866	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	8.89102437956243	9.10034920437309	9.19071225895562	9.14095977502013	9.12375525139104	9.17908350233948	9.35976787981781	9.02749366004402	0.111768455815051	0.466780454310266	0.746491290418458
Merged-chr5-63831240-4	chr5	63831136	63831336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	18741.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	5.65224647468776	5.28938667336237	5.37040377135	6.13360034385503	5.66548462621441	5.41705173619776	5.83286231844588	5.48731688225254	-0.110545866145712	0.735166831543759	0.895431262597044
Merged-chr11-75655089-5	chr11	75655057	75655257	+	994.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080775)	promoter-TSS (NM_001080775)	-858.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	5.11785857768888	5.1578404280773	5.35735575653764	5.05113703260144	4.95673864951101	5.08222741143894	4.91955341125478	5.43242181632489	-0.110309099415397	0.729268269585179	0.892544209924747
Merged-chr2-158767910-4	chr2	158767795	158767995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027975)	promoter-TSS (NM_027975)	-204.0	NM_027975	71878.0	Mm.85162	NM_027975	ENSMUSG00000027654	Fam83d	2310007D09Rik|BB104611	family with sequence similarity 83, member D	protein-coding	8.11762924380952	8.08800575844804	7.96782565615679	8.22247519732189	8.0485950246317	7.82035179610963	8.09266635382867	7.91987032128069	-0.166624888210783	0.312373093521104	0.62433393490407
Merged-chr2-181072323-4	chr2	181072212	181072412	+	793.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33135.0	NM_015730	11438.0	Mm.252369	NM_015730	ENSMUSG00000027577	Chrna4	Acra-4|Acra4|EBN1|ENFL1	cholinergic receptor, nicotinic, alpha polypeptide 4	protein-coding	4.07620665669478	4.02688659354621	3.88201301760268	3.83107165503498	4.01949820865012	4.10572872876411	3.96624469711062	4.02838802521814	0.22054608791659	0.59936162682016	0.826316125212269
Merged-chr7-126135614-4	chr7	126135513	126135713	+	737.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 9 of 23)	intron (NM_028816, intron 9 of 23)	-53202.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	4.10955070023139	4.10293832593261	4.20046838607533	4.12680290700313	4.32648598902661	4.23484530255977	3.65748939849892	4.15355473251169	-0.0254534592542274	0.953783338164348	0.983547181850056
Merged-chr2-167377911-4	chr2	167377798	167377998	+	964.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28720.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	5.63883349553791	5.30293919561272	5.58815532314477	5.64856685588825	5.66508135565554	5.29610845812543	5.75366729022624	5.70948077151427	0.11300637326903	0.686492218441563	0.871787672169905
Merged-chr6-122660627-3	chr6	122660529	122660729	+	811.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34205.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	3.56610141216613	3.47403025550275	3.21535935923136	3.31443594211308	3.38727965029378	3.63072791578499	3.50003000354589	3.61473202068071	0.46254911237112	0.361566920570181	0.666804120615217
Merged-chr9-7572827-4	chr9	7572733	7572933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310717, intron 2 of 9)	B3|SINE|B2	1437.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	7.66446980482305	7.43030696715205	7.38526175052577	7.61731978352509	7.70415985575233	7.62188141595421	7.33846555348799	7.24091734970458	-0.0484740738941302	0.804058978556024	0.924515209347214
Merged-chr16-13903685-1	chr16	13903585	13903785	+	1000.0	f0_c57.idr	promoter-TSS (NM_053181)	promoter-TSS (NM_053181)	524.0	NM_001289562	93734.0	Mm.76554	NM_033564	ENSMUSG00000022679	Mpv17l	M-LP	Mpv17 transgene, kidney disease mutant-like	protein-coding	4.95376471570426	5.13354118942761	4.91747095251975	4.88741218965835	5.23327329471602	5.01731164717361	5.22126318700026	5.30044630931622	0.436650628668218	0.150502462923819	0.433182968396867
Merged-chr14-61681406-4	chr14	61681253	61681453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	1020.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	7.34352677039612	7.8886412789742	7.37586087821306	7.25381236252791	7.6194421287038	7.6323842255957	7.40863636724298	7.5062839096409	0.0765790520215119	0.713873282077995	0.885517868757269
Merged-chr1-85122030-3	chr1	85121932	85122132	+	822.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	-12179.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	3.46839094248307	3.42202502483291	3.56806221899052	3.35003052763945	3.01501846306516	3.35728355748493	3.037373631881	3.41428999939633	-0.880045168449881	0.117731974660219	0.379505363678351
Merged-chr2-167773122-4	chr2	167773016	167773216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81939.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	8.12185320343238	8.15450718783813	8.47739438469122	8.28403575779249	8.1414239061088	8.20051139174683	8.40417943364094	8.42292037045358	0.0366411096692103	0.829224564119179	0.934397133080848
Merged-chr13-24776407-4	chr13	24776294	24776494	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-14457.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	4.93714694610251	5.15504116563322	4.77639099429484	4.72753350744205	5.1824815026651	5.65677333911098	5.0568210860731	5.53065209170337	0.880607920175757	0.00775595163385749	0.0657058892342707
Merged-chr8-35520121-3	chr8	35520027	35520227	+	981.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24594.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	3.01522580847591	2.85095354021259	2.93097173952148	2.52956461070354	4.23255773453781	4.0883804191159	4.26604243357558	3.61652468081002	5.34530632590964	4.97618508464602e-14	6.90448105536099e-12
Merged-chr4-119126905-2	chr4	119126763	119126963	+	993.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 2 of 9)	intron (NM_011400, intron 2 of 9)	18118.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	3.43783727444912	3.40883660001551	3.19269386302549	3.38131067910789	3.23516103089689	3.609832578381	3.4248194744141	3.77772718855056	0.544028693499808	0.304522405283475	0.617066911687048
Merged-chr11-46834383-4	chr11	46834270	46834470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 5 of 8)	intron (NM_178759, intron 5 of 8)	23571.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	5.36240698057383	4.97920108278345	5.21658660333803	5.08664981915636	5.25819933036404	5.11739657290817	5.22137795145153	5.38695342834682	0.171155004615566	0.567101539474229	0.808122532096819
Merged-chr1-194978219-3	chr1	194978130	194978330	+	878.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1271.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	3.90738416269247	3.6643082034792	3.76903821656177	3.47915407704883	3.84676854996771	3.48554587333643	3.65239474529768	3.61102367566061	-0.119118299947334	0.809138979308056	0.926362488588753
Merged-chr2-18923289-1	chr2	18923189	18923389	+	951.0	f0_balb.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	74832.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	3.49538016648721	3.13611662146966	3.19500696184044	3.60641139638188	2.72776846783639	3.04961546094613	3.06522911969381	3.19336392377217	-1.56009867184375	0.0174530633629638	0.116745756706363
Merged-chr1-138175341-4	chr1	138175235	138175435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011210)	promoter-TSS (NM_011210)	-30.0	NM_001268286	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	6.74021480162689	7.04855717498901	6.71124980147186	6.79674412297392	6.79690815287505	6.99026976454601	6.77916126156919	7.01574573779325	0.0876310643673837	0.667301606149168	0.862338897157766
Merged-chr3-107067426-3	chr3	107067328	107067528	+	717.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27924.0	NR_033498	229694.0	Mm.347584	NM_173787	ENSMUSG00000056145	AI504432	A230102G19	expressed sequence AI504432	ncRNA	3.55977742989698	4.02334155390086	3.29294510344047	3.70716041750884	3.88371174446761	4.14109070948744	3.81724626573177	3.72890979663088	0.641236190048923	0.212422744600343	0.517371498007674
Merged-chr2-33755281-2	chr2	33755181	33755381	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 7 of 9)	intron (NM_175184, intron 7 of 9)	-50535.0	NR_045729	320482.0	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	2.99282398946368	2.78189037982622	3.09912761290335	2.798018432512	2.68011685287909	2.92059215580299	2.73953311064784	2.81226440256051	-0.615409365396071	0.332872469874649	0.643788844678476
Merged-chr14-54239243-2	chr14	54239139	54239339	+	822.5	f0_balb.idr|f1_balb.idr	TTS (NM_010015)	TTS (NM_010015)	14690.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	3.68285782736789	3.78580026100295	3.46299664717462	3.593591908999	3.6396865878937	3.45034053106549	3.71723868456654	3.68125992819848	-0.0245838743535585	0.95923779195628	0.985474089164252
Merged-chr9-101034007-2	chr9	101033881	101034081	+	914.033325	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311149, intron 1 of 13)	intron (NM_001311149, intron 1 of 13)	903.0	NM_001311149	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	3.32410570056604	3.46818635670728	3.37961265084695	2.92878360863266	3.5580095264147	3.2561200919948	2.99974301099582	3.32272653570441	0.0675263169176136	0.910125198139878	0.966671146059764
Merged-chr14-121985681-4	chr14	121985533	121985733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 6 of 8)	intron (NM_026861, intron 6 of 8)	-20440.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	5.72158846528033	5.28999594174932	5.28513724589056	6.02199039919675	5.78201389783671	5.49429114148696	5.15820141817758	5.1441477992748	-0.343403018105794	0.320829624619255	0.632585369827533
Merged-chr8-72151890-3	chr8	72151787	72151987	+	645.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001001491, exon 8 of 8)	3' UTR (NM_001001491, exon 8 of 8)	-9313.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	3.68989221042845	3.66940890631882	3.58927591895404	3.48173203615468	3.57355718194027	3.53441093141097	3.46647576135684	3.53351380364298	-0.238148323862403	0.622906654638317	0.83881101764162
Merged-chr11-34056681-4	chr11	34056563	34056763	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 3 of 20)	intron (NM_010696, intron 3 of 20)	9735.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	4.78051205381928	4.88740416079897	5.12383708145589	4.43816701448996	4.81277080568315	4.79354149579365	5.09821882902056	5.23471562378608	0.363702657359486	0.315992979597835	0.62783028667765
Merged-chr5-99297787-4	chr5	99297695	99297895	+	932.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030692, exon 4 of 4)	non-coding (NR_030692, exon 4 of 4)	-44868.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.40188378446777	4.70137032859697	4.76325994842444	4.77087008031909	4.30121650584756	4.53270823210317	4.55444234172064	4.72472377112527	-0.323854072273596	0.379239451852478	0.681818719997158
Merged-chr10-127534617-7	chr10	127534529	127534729	+	830.392883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183297)	promoter-TSS (NM_183297)	-70.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	3.46979789935611	3.94978534033352	3.21023869761255	3.11576571047069	3.98667506846632	3.70299845348088	3.39729494844334	3.6346756586467	0.6807038089807	0.243018843389135	0.553987597504451
Merged-chr12-108904070-2	chr12	108903970	108904170	+	883.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	9798.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	2.83308067173958	2.97913669523318	2.89336388068039	2.76703208141817	2.59886428927457	2.73989457994717	2.88229311114868	2.70341838357679	-0.649837410377152	0.310423554739877	0.6225601620496
Merged-chr6-17408302-4	chr6	17408189	17408389	+	981.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55668.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	4.65921849843871	4.97790524149431	4.93022362984876	4.59626796627132	6.06162389799541	6.06729361060972	5.67841627800068	5.3137607586801	1.84432711918311	1.33306385388838e-08	6.91590029562105e-07
Merged-chr11-77982559-4	chr11	77982424	77982624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174852)	promoter-TSS (NM_174852)	-292.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	8.25112950230336	8.54839020578585	8.10315237370985	7.89380117901674	8.62137353509014	8.61534413195869	8.47167666603774	8.40124545081855	0.398980958137912	0.0348096828979625	0.184697249024869
Merged-chr4-117133525-1	chr4	117133425	117133625	+	1000.0	f0_c57.idr	intron (NM_001313916, intron 1 of 14)	CpG	438.0	NM_013807	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	4.77535251932536	4.89929181141427	4.61465665170171	4.74737257020697	4.63720922925754	5.09054996141687	4.89563006654108	4.84659264186371	0.211098735756278	0.532961660173157	0.788398805429988
Merged-chr15-96569326-4	chr15	96569188	96569388	+	820.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72674.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	3.11558204125746	3.78638537809316	3.70734276717952	3.34186290782638	3.51464288114766	3.49977287667601	3.54164968245763	3.65668908164802	0.135422127800679	0.802883429949262	0.923936032101707
Merged-chr9-121476281-2	chr9	121476181	121476381	+	877.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19413.0	NM_001284508	12424.0	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	3.19117554010239	3.37186018733307	3.19157052348757	2.92451892309586	3.27888036501062	3.36544734361354	3.50098453461792	3.25006539410015	0.672779708938393	0.223968518357034	0.53210045864795
Merged-chr9-50444012-4	chr9	50443915	50444115	+	825.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-50510.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	3.91729009046074	3.80208200422284	3.81959508711534	3.64910631648456	3.58527942192226	3.99132344972336	3.94667984890259	3.86737159366716	0.168233903336302	0.714043783306431	0.885667627155899
Merged-chr8-86852366-3	chr8	86852292	86852492	+	921.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 3 of 6)	intron (NM_030563, intron 3 of 6)	32866.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	3.65470852654357	3.69354980588083	3.48730726244554	3.94195879797309	3.66123244737544	3.66100631636622	3.47503471832506	3.70451775359268	-0.282346615392444	0.566473364989434	0.807900514541786
Merged-chr2-103063095-3	chr2	103062994	103063194	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175094, intron 1 of 10)	intron (NM_175094, intron 1 of 10)	10419.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	3.38087518751491	3.5527579696114	3.38128968303674	3.39614625134998	3.59251936822254	3.55547055488363	3.81791612056499	3.43872229519077	0.588382202692192	0.232839282854165	0.542464407511367
Merged-chr1-183803549-4	chr1	183803453	183803653	+	912.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151520, intron 2 of 2)	intron (NR_151520, intron 2 of 2)	54576.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	4.56756069520218	4.82869161311326	4.66346300855511	5.18317241287075	5.49488354100147	4.89077555428339	5.52907347943537	5.48324380297636	0.97177923731439	0.00786686493978469	0.0664320298432713
Merged-chr2-73910686-4	chr2	73910667	73910867	+	863.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301721, intron 2 of 4)	CpG	559.0	NM_175015	228033.0	Mm.2966	NM_175015	ENSMUSG00000018770	Atp5g3	6030447M23	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)	protein-coding	4.495019008767	4.10743931179006	4.9734465536717	4.13812046591684	4.12919984165843	4.31901325926035	4.12265118288123	4.28252544492098	-0.604471550350494	0.176199972548678	0.471210469117913
Merged-chr18-57844699-3	chr18	57844577	57844777	+	964.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34001.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	3.52604589234834	3.19585863554718	3.75933551277449	3.72088216720866	3.43950637921692	3.28781698833239	3.0987297817251	3.23990826626938	-1.02615284355519	0.0727211172088171	0.290114135287882
Merged-chr3-15264625-3	chr3	15264512	15264712	+	930.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67690.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	3.58190922597298	3.66249429236981	3.47279362154663	3.69582312678407	3.71952298510457	3.52763486123685	3.51523351504204	3.28750455823208	-0.264437687474775	0.60107026537717	0.827071740947179
Merged-chr1-92933713-4	chr1	92933600	92933800	+	809.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011796)	promoter-TSS (NM_011796)	-708.0	NM_011796	23830.0	Mm.294315	NM_011796	ENSMUSG00000026270	Capn10	AW049679|Capn8|mKIAA1845	calpain 10	protein-coding	3.60731786108803	3.27884397699112	3.45153754301579	3.5369911058405	3.34922541800697	3.25142055006354	3.43815040682631	3.69989951318529	-0.107199484712622	0.837904092091115	0.938474063450959
Merged-chr1-106171545-4	chr1	106171435	106171635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040630)	promoter-TSS (NR_040630)	-11.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	8.99146434018755	9.17435029282204	9.33930098716085	9.08139962618958	9.2162367462108	9.18155907187099	9.26827522440556	9.0088644465123	0.0265581047254448	0.861489925631773	0.947685517603647
Merged-chr7-19666975-2	chr7	19666875	19667075	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1945.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	2.69628864648693	2.73227233838899	2.82585150346978	2.56363519031205	2.99290980244695	2.86966641952982	2.81565555753052	2.82442560045797	0.859473237572853	0.166121542633187	0.457180007581197
Merged-chr9-110997427-4	chr9	110997302	110997502	+	991.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152179, intron 2 of 6)	intron (NR_152179, intron 2 of 6)	-7689.0	NM_153100	235636.0	Mm.441138	NM_153100	ENSMUSG00000066319	Rtp3	Tmem7	receptor transporter protein 3	protein-coding	5.34409392909902	5.37551471322026	4.91714920058376	5.59966137905211	5.63450534579172	5.63483773990428	5.74801538230403	5.03454969727121	0.340108678605085	0.305522158035651	0.617928613270241
Merged-chr2-121413807-4	chr2	121413722	121413922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007952)	promoter-TSS (NM_007952)	-30.0	NM_153075	212670.0	Mm.384318	NM_153075	ENSMUSG00000033486	Catsper2	-	cation channel, sperm associated 2	protein-coding	8.99468620647451	8.96307000693052	9.12879222026026	9.08176006632496	9.19636737494501	9.20585565129222	9.19958975946703	9.03281842524199	0.144598741771684	0.300827470485456	0.612733890049914
Merged-chr6-87876422-3	chr6	87876300	87876500	+	843.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11540.0	NM_017477	54161.0	Mm.258785	NM_017477	ENSMUSG00000030058	Copg1	AU019265|BC056168|Copg|D6Ertd71e|D6Wsu16e	coatomer protein complex, subunit gamma 1	protein-coding	3.60440803492455	3.56171113742785	3.84609776257945	3.62710340439495	3.43945812492454	3.35277190110299	3.48101448317952	3.799052049133	-0.428918022073855	0.393628240367986	0.692744826830335
Merged-chr2-91097845-4	chr2	91097713	91097913	+	799.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011355, intron 1 of 4)	intron (NM_011355, intron 1 of 4)	1135.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	3.3771351315813	3.73186455146672	3.66450862821041	3.33188963698622	3.62176595674517	3.5565218426608	3.48667796469007	4.01837518947447	0.48949529060722	0.341254971217987	0.650357107186943
Merged-chr7-99450919-4	chr7	99450813	99451013	+	862.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201352, intron 10 of 17)	intron (NM_201352, intron 10 of 17)	-15091.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	3.74583922211837	3.92481510149028	3.95544633657739	3.88987802531418	4.08442464879155	4.17090625751379	4.03105875898493	3.79947948247246	0.404767169183044	0.346756760263803	0.654927235470945
Merged-chr11-94601985-6	chr11	94601879	94602079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153807)	promoter-TSS (NM_153807)	-193.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	6.33638897630597	6.40614264115524	6.46294263609741	6.51129104675832	6.50561261781593	6.28998823937686	6.86883479135258	6.50844115872787	0.183085114540785	0.419922679942296	0.712991415178256
Merged-chr17-48264015-7	chr17	48263839	48264039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172623)	promoter-TSS (NM_172623)	-356.0	NM_172623	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	6.80173355465744	7.00452463993966	6.55342418455111	6.04480036912662	7.37388033410397	7.35517053240261	6.76818627246916	6.69497901012146	0.628026214165334	0.0281998751602306	0.160862230648346
Merged-chr8-70730281-4	chr8	70730176	70730376	+	985.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201607, intron 3 of 16)	CpG	6212.0	NM_201607	110385.0	Mm.255180	NM_201607	ENSMUSG00000031842	Pde4c	Dpde1|E130301F19Rik|dunce	phosphodiesterase 4C, cAMP specific	protein-coding	5.14535926734647	5.38319781034499	5.04889671759107	5.00479119065468	4.86968808826611	5.08214802210129	4.84520960449508	5.11110687839113	-0.331237177795183	0.299301468909034	0.611562066856898
Merged-chr7-48909230-2	chr7	48909130	48909330	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27634.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	4.23140936143226	4.18217613979229	4.36442341635759	4.39503967534474	4.3566842691107	4.53446885516352	4.1669472498544	4.22948199448761	0.0616148554845644	0.874127451865076	0.952832392676241
Merged-chr2-103968486-3	chr2	103968389	103968589	+	887.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142337, intron 1 of 3)	ID_B1|SINE|B4	-1068.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	3.67676469498521	3.54378641659794	3.49846178821249	3.53429221443938	3.9316675249543	4.05302052801384	3.99995947905424	3.92755565944666	1.21988811287989	0.00611025655396287	0.0549945902819743
Merged-chr12-29693921-2	chr12	29693819	29694019	+	605.5	f0_balb.idr|f0_c57.idr	intron (NM_001361657, intron 3 of 24)	Lx|LINE|L1	-7474.0	NR_046080	328075.0	Mm.447832	NR_046080	ENSMUSG00000112663	C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	3.27375973627948	2.99200715221629	3.5611201756842	3.53504720627394	3.49911482149176	3.387922087811	3.59600878213467	3.79292411213405	0.691235103299362	0.221364938048468	0.529463056908312
Merged-chr1-80665349-4	chr1	80665270	80665470	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285927)	promoter-TSS (NM_001285927)	-18.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	5.90599897080028	5.70574626770529	5.81844621839024	5.99531724793333	5.79469790822395	5.46454052209952	5.69410228619654	5.31494275856119	-0.455132398166717	0.0970687987956831	0.341353541181752
Merged-chr8-36815029-4	chr8	36814935	36815135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 4 of 17)	intron (NM_001194940, intron 4 of 17)	-81981.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	6.92358695466095	6.38890383825854	7.05574576873348	6.96063399909971	6.70656021237726	6.52371224801811	6.83865322774341	6.55885780004795	-0.272727024242125	0.241836561252783	0.55235892759878
Merged-chr4-136180576-3	chr4	136180476	136180676	+	946.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305399)	promoter-TSS (NM_001305399)	-206.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	4.41702752394483	4.8790979339388	4.41779133044752	4.53739670341441	3.34725894862937	3.59282269488195	3.52958016262147	3.74052835299433	-3.13929452376124	4.45419808527331e-09	2.53231122613154e-07
Merged-chr15-55306499-4	chr15	55306399	55306599	+	873.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1251.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	4.83618539630641	4.16352207972964	4.38560667737897	4.41102087037762	4.27034832048723	4.60427737766303	4.53324360385621	4.70057663499997	0.144318094285599	0.716692071647633	0.886676884514573
Merged-chr9-35541660-4	chr9	35541556	35541756	+	967.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013932)	TTS (NM_013932)	16814.0	NM_013932	30959.0	Mm.291723	NM_013932	ENSMUSG00000032101	Ddx25	AW047046|GRTH	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	protein-coding	5.43061180397301	5.62687268789715	5.34564426917409	5.80663360692147	5.28960133314279	5.11038032123931	5.16281935804995	5.00535259729894	-0.768781530542865	0.0109794365527727	0.0843707479934739
Merged-chr4-40142952-4	chr4	40142868	40143068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007386)	promoter-TSS (NM_007386)	-297.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	8.85330017453613	8.87264269152286	8.85071655398168	9.08417438104082	8.98238039412378	9.10543767375941	9.18123945162565	8.8841572986557	0.146906587615839	0.337232245370233	0.647016127715841
Merged-chr7-97125520-4	chr7	97125406	97125606	+	843.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	43755.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	3.90256200087697	3.66068937476439	3.73492286991657	4.3920924905701	4.41723220284826	3.91403939050294	4.12408621383235	4.04970195261835	0.43587396088099	0.384196414445269	0.685759481012083
Merged-chr16-62785804-3	chr16	62785713	62785913	+	878.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178925, exon 2 of 6)	exon (NM_178925, exon 2 of 6)	903.0	NM_178925	106338.0	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	3.60813859327351	3.94069647582592	3.42434304977246	3.73295002475728	3.91607580961261	3.66623655708175	3.85100119650891	3.86541032838575	0.396988085896266	0.405433760769166	0.702273581691623
Merged-chr4-95211991-4	chr4	95211876	95212076	+	956.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-159754.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	4.66698862297574	5.30685360787047	4.62773368628221	4.56672601685138	4.67501505851285	4.58617975254666	4.47952166045662	4.58349428822942	-0.512244291843836	0.187465726776008	0.485862700776423
Merged-chr10-80057792-4	chr10	80057691	80057891	+	759.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183426, exon 32 of 32)	exon (NM_183426, exon 32 of 32)	3772.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	3.5582685831445	3.43591684568622	3.66962422949962	3.60866028861144	3.84954968513401	3.48769537276974	4.01703690673257	3.81758741603743	0.718043932433042	0.134482721028756	0.408150155634923
Merged-chr15-5496152-4	chr15	5496037	5496237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045274)	promoter-TSS (NR_045274)	-181.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	5.32178533658256	5.30028063291065	5.71118697487054	5.47706660088457	5.69696641022429	5.75976607992221	5.68214889532846	5.60783335708748	0.383763426422567	0.155335091819074	0.440979076070846
Merged-chr6-129546077-1	chr6	129545977	129546177	+	774.333313	f0_balb.idr	Intergenic	Intergenic	-12793.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	3.17820511727686	3.00096416607613	3.1274099145876	3.41748174995892	2.51937104769539	2.56537924270449	2.61548895242213	2.62102435462663	-3.69037912410033	3.48341921007731e-05	0.000824015606361225
Merged-chr4-40183081-3	chr4	40182976	40183176	+	884.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 12 of 20)	intron (NM_007386, intron 12 of 20)	39811.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	3.14354471625189	3.59480087273489	3.39956156094352	3.41435487120425	3.44450558232748	3.73129439352372	3.32818132290034	3.61136364170945	0.443933096850803	0.399339419486902	0.697398862845002
Merged-chr3-31095759-4	chr3	31095674	31095874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039090, intron 1 of 6)	intron (NM_001039090, intron 1 of 6)	716.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	8.2525440552118	8.63208198035683	8.56245026096415	8.24804235050809	8.74807534633955	8.7214085606777	8.97553706413752	8.35261382651798	0.359474430300396	0.0591551488929328	0.256275370849061
Merged-chr2-33049063-1	chr2	33048963	33049163	+	602.0	f0_balb.idr	intron (NM_001355201, intron 6 of 29)	intron (NM_001355201, intron 6 of 29)	37394.0	NM_001355202	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	3.1327086992326	3.08299799924147	3.40703494940629	3.26401370251812	3.02885230761691	2.89371461289852	3.23706929660184	3.40495510649589	-0.280530274260512	0.633578139977002	0.844711516172605
Merged-chr17-84183606-4	chr17	84183520	84183720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001001806)	TTS (NM_001001806)	4327.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	6.73918665626963	7.00896928235706	6.64665628408189	7.03559005737559	7.04570986810432	6.72361235511012	7.07931759861007	6.96844072160722	0.117838251799149	0.577253513949418	0.813992619873917
Merged-chr4-55798222-4	chr4	55798119	55798319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-265744.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	6.247547248907	6.37703615715275	6.41505537028012	6.83756989385982	6.44825959886903	6.18910809241398	6.27433861736511	6.37536888057947	-0.26556561999639	0.279665134408437	0.591709309852509
Merged-chr9-48163228-3	chr9	48163132	48163332	+	652.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	177666.0	NM_030069	78252.0	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	3.47947647796685	3.69367333503674	3.68552761706304	3.46776517529648	3.2386128976459	3.65129891096151	3.4101670101033	3.29952797231319	-0.608512667395239	0.242869745427793	0.553793747110612
Merged-chr17-88545465-4	chr17	88545394	88545594	+	923.7160640000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 3 of 21)	intron (NM_028658, intron 3 of 21)	15370.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	4.74318501690947	4.16175898364889	4.74397763547215	4.75793909743676	4.33220550955266	4.41456231887192	4.64969226487317	4.66881530380723	-0.239753127560572	0.540505489522817	0.792795047998954
Merged-chr7-143009499-2	chr7	143009399	143009599	+	609.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_020286, intron 2 of 7)	intron (NM_020286, intron 2 of 7)	3840.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	3.03398610092193	2.98824278744481	3.14917427239068	3.0517597935676	3.21231937063428	2.87348784046335	3.08167311871585	3.03287170844404	0.0297641822446625	0.958995277643802	0.985352939262478
Merged-chr11-75291086-4	chr11	75290986	75291186	+	757.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57297.0	NM_001164223	68275.0	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	4.03614200781363	4.35254329827891	3.77755326501394	3.90676515432369	4.09408834743646	4.00928905803782	3.70546039885435	4.12481185902522	-0.101298224273132	0.824962651522902	0.932922636280205
Merged-chr17-12756082-4	chr17	12756008	12756208	+	704.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	13598.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	3.51314238161826	3.81784386604373	3.89194482920723	3.77795183188197	3.89238960563734	3.62935807017494	3.87512116184491	3.8895919426396	0.204854417936588	0.656374680151979	0.85658929556191
Merged-chr13-100824624-3	chr13	100824523	100824723	+	871.7666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022885, intron 4 of 15)	intron (NM_022885, intron 4 of 15)	8804.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	4.43708984623242	3.98784876177454	3.90858318105193	4.43557863291561	4.06752643117066	3.97429222576694	3.9968103780589	4.10797151862743	-0.48330857963542	0.270968778720027	0.58272879364506
Merged-chr6-115698918-2	chr6	115698818	115699018	+	781.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-22283.0	NM_029780	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	3.84960794067797	3.47099280652501	3.37138584994945	3.27629010440036	3.58877036759422	3.66920234328871	3.74155231230985	3.75582805992587	0.603289060739659	0.232563617935718	0.542155889072363
Merged-chr3-41409026-1	chr3	41408926	41409126	+	803.0	f0_balb.idr	Intergenic	Intergenic	84173.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	5.2177672840026	4.55472727694072	4.90448494064253	4.98301453056873	4.45218059144157	4.61756589050162	4.27261490651124	4.28817790567277	-1.13023656642401	0.0030857324787783	0.0326844273968692
Merged-chr5-45926157-4	chr5	45926050	45926250	+	978.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_110478)	TTS (NR_110478)	6259.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	4.56568746923563	4.40445837132338	5.02461283800765	4.47877191557108	4.65807999601987	4.04010496569988	4.33258481754167	4.56343540443782	-0.45850909420436	0.273886128782901	0.585609515188889
Merged-chr10-81221582-4	chr10	81221480	81221680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178662, intron 2 of 12)	intron (NM_178662, intron 2 of 12)	9199.0	NM_178662	16467.0	Mm.127681	NM_178662	ENSMUSG00000034958	Atcay	3322401A10Rik|BB077577|BNIP-H|CLAC|hes|ji	ataxia, cerebellar, Cayman type	protein-coding	6.05174463945379	5.80184976785571	5.25608329873047	5.95741245656749	5.94629888439822	5.66987000381799	6.1866441802289	5.65898150952673	0.127383157441468	0.672033892905519	0.864997909291221
Merged-chr2-154215392-3	chr2	154215289	154215489	+	866.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012392, intron 12 of 15)	intron (NM_001012392, intron 12 of 15)	-8353.0	NM_144890	228802.0	Mm.167411	NM_144890	ENSMUSG00000038572	Bpifb5	Lplunc5	BPI fold containing family B, member 5	protein-coding	3.90879111881064	3.66253820947037	3.67466300738269	3.48228678576209	3.23932537004246	3.56681089716525	3.80348692116602	3.56522700202114	-0.412419852003384	0.427774292958229	0.71887209364609
Merged-chr7-25683716-4	chr7	25683638	25683838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172148, intron 2 of 2)	intron (NM_172148, intron 2 of 2)	2580.0	NM_172148	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	6.99308397353396	6.49824747747456	6.75110580907342	6.69601134468344	6.49401035461698	6.34848403504552	6.91170858029364	6.56419512336031	-0.208579225410086	0.370861749690748	0.675068605253279
Merged-chr1-150393208-4	chr1	150393120	150393320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145511)	promoter-TSS (NM_145511)	-140.0	NM_001357579	226499.0	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	9.14353542978861	9.28502893118036	9.41351927781175	9.14009484062219	9.26596742504519	9.47306963334147	9.27205205622894	9.136077488091	0.0532958125475027	0.726784982510778	0.891273682846738
Merged-chr10-19613389-3	chr10	19613339	19613539	+	925.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-8589.0	NM_178258	237310.0	Mm.331979	NM_178258	ENSMUSG00000039760	Il22ra2	CRF2-10|CRF2-s1|CRF2X|Il-22bp	interleukin 22 receptor, alpha 2	protein-coding	3.59705375518438	3.60680786879433	3.97600614505656	3.8875575335741	3.68449729787677	3.65728016267848	3.40930690508834	3.41920778886251	-0.712043525362169	0.156476628617161	0.442381933842033
Merged-chr1-167337929-4	chr1	167337858	167338058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12033.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	7.15835220488166	7.24942597990626	7.34291845040628	7.55508183379604	7.28992666306572	6.91463583382826	7.11204926020226	7.48871720800429	-0.164678129512847	0.433007028966886	0.722758873865112
Merged-chr5-52743472-4	chr5	52743375	52743575	+	883.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025951, intron 1 of 9)	intron (NM_025951, intron 1 of 9)	1901.0	NM_025951	67073.0	Mm.248647	NM_025951	ENSMUSG00000029186	Pi4k2b	2610042N09Rik|4933409G22Rik	phosphatidylinositol 4-kinase type 2 beta	protein-coding	4.53110751350355	4.80666689289177	4.61289012758553	5.01406745635374	4.41872024254344	4.09241325809929	4.62967339310546	4.60988291746146	-0.690760500952618	0.0772681716328439	0.300621546250571
Merged-chr10-94199006-4	chr10	94198923	94199123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025551)	promoter-TSS (NM_025551)	14.0	NM_025551	66414.0	Mm.27886	NM_025551	ENSMUSG00000020022	Ndufa12	2410011G03Rik|AW112974	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12	protein-coding	6.46047433813027	6.37035939624489	6.26641268619325	6.15958852854754	6.31806424683393	6.06889586972642	6.6107533538236	6.42371230981194	0.0922823681819042	0.695343497498699	0.876571468190848
Merged-chr8-13504410-4	chr8	13504303	13504503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9868.0	NM_019521	14456.0	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	6.07263570420937	5.83822450411016	6.65638698648676	6.98860663994037	5.22306666505012	5.56711467255597	5.81872940521335	5.57268081032087	-1.45791563431659	1.3682890592727e-05	0.000365591017079472
Merged-chr7-141168834-4	chr7	141168727	141168927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172101)	promoter-TSS (NM_001172101)	109.0	NM_145135	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	7.3565784986074	7.35350469916437	7.15300147279343	7.47366688575097	6.99753311390968	7.18166037972344	7.34091157914327	7.40146588087147	-0.153673790933124	0.431478316014163	0.721710551668303
Merged-chr10-125370293-4	chr10	125370199	125370399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-41336.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	7.79473623551398	8.16991927620089	8.51409571817313	8.19270150470445	8.11839188441491	8.04509569414581	8.1584505325922	8.12497957385575	-0.102748434943364	0.58579345785382	0.818454789999846
Merged-chr5-99283756-3	chr5	99283617	99283817	+	614.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30790.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	2.66110792832429	2.56276663233225	2.59973953881628	2.2582972557734	2.32953719510619	2.57298789200486	2.38834578280665	2.71878007000052	-0.0816531875228592	0.911444739835419	0.96695373445261
Merged-chr17-80706616-4	chr17	80706522	80706722	+	973.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360278, intron 1 of 33)	intron (NM_001360278, intron 1 of 33)	21403.0	NM_001360278	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	4.6482689895276	4.59979548241066	5.31029376163775	5.44454769497053	4.80532426502019	4.32160241856426	4.86214380909531	5.05082124568793	-0.551808219398476	0.185545493034856	0.483505130833902
Merged-chr5-123288283-2	chr5	123288183	123288383	+	774.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56165.0	NM_029850	77045.0	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	2.35198685489053	2.51226470607565	2.41410008252054	2.18874183337793	1.90742741840466	2.09215172664562	1.98742315958372	2.28626540724261	-2.19485992063934	0.0198729247777536	0.127561990509128
Merged-chr15-51991824-4	chr15	51991715	51991915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009009)	promoter-TSS (NM_009009)	-55.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	8.53035145294955	8.67715432083415	8.72111808475127	8.74765046399864	8.83116566134895	8.94951574899278	9.01702934018339	8.81044383570314	0.285111394957948	0.0537972247552244	0.242069490250446
Merged-chr9-22143318-4	chr9	22143219	22143419	+	848.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7573.0	NM_001102405	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	3.6527155363536	3.8135461363075	3.76855020800612	3.71078832207332	4.07972589685527	3.94383203499614	4.24558288269384	4.01662777851129	0.947543656789834	0.0274468775421074	0.15795935450919
Merged-chr18-66436775-4	chr18	66436672	66436872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21832.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	5.80848840222014	5.68623233642041	5.59941745559612	6.03066631800225	5.88131028458439	5.88516206053125	6.2042229786743	5.805385333455	0.228106765901089	0.392631958032737	0.692052352247535
Merged-chr4-148498842-4	chr4	148498725	148498925	+	965.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039554, intron 1 of 4)	B2_Mm1t|SINE|B2	1637.0	NM_001039554	654812.0	Mm.388929	NM_001039554	ENSMUSG00000028989	Angptl7	-	angiopoietin-like 7	protein-coding	5.04277084232803	4.97143318748097	4.7336383184802	4.73072563438697	4.78896273001189	4.70032565224558	4.78655881607154	4.69099736398266	-0.253412472852425	0.450593604673557	0.735357832948579
Merged-chr9-22155774-4	chr9	22155693	22155893	+	984.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1053.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	5.19293463081548	4.97968665715665	5.16501949376752	4.73946302766127	4.72792111451549	4.8500206692252	4.91836510771528	4.79167657499133	-0.390411184264253	0.248117854345204	0.559186294982657
Merged-chr13-59834908-3	chr13	59834788	59834988	+	925.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11741.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	3.58175655827183	3.24990706422951	3.77162258995731	3.73391717786027	3.37110814882978	3.53377724506683	3.40627989523713	3.23109301849348	-0.725577948119708	0.175564500270857	0.47032648424841
Merged-chr9-65346669-4	chr9	65346563	65346763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016688, exon 1 of 5)	exon (NM_016688, exon 1 of 5)	595.0	NM_016688	50996.0	Mm.29193	NM_016688	ENSMUSG00000041837	Pdcd7	C80112|ES18	programmed cell death 7	protein-coding	6.03131578283546	6.31787214633469	5.94130433050001	5.80988501178891	6.31348308349886	6.23025607143849	6.16520017118074	6.32060756857376	0.357989801758931	0.141956550110442	0.419214424773313
Merged-chr2-132102876-4	chr2	132102790	132102990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	42218.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	6.39966262016796	6.99581758054547	6.55924741314651	6.83413637842169	6.64028396321085	6.96152784415127	6.38659287565866	6.65006620153164	-0.0785558464754961	0.744329680262722	0.899257286839234
Merged-chr6-98105462-4	chr6	98105376	98105576	+	853.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113693.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	4.47401858561571	4.34823939231536	4.51232413621773	4.36881886220233	4.23870437566342	3.9701282440734	4.24907022815136	4.17224349314359	-0.624341820776392	0.112810601783813	0.371403676741782
Merged-chr6-97803837-4	chr6	97803749	97803949	+	944.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3209.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	5.368630067966	5.16298658624629	5.01481803017341	4.54673235288482	4.99771175975382	5.4051833939791	4.55147441016891	4.90480729365694	-0.0947564846481727	0.808179744068457	0.925984046103139
Merged-chr17-65612660-4	chr17	65612553	65612753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355402, intron 1 of 6)	CpG	902.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	5.22534391862728	4.86951460641302	4.99331112674146	5.22926143839831	5.28125920436625	5.13292994487232	5.10651982940296	5.44463926954755	0.283862988600857	0.36003651298034	0.665611988334495
Merged-chr12-111894235-3	chr12	111894136	111894336	+	692.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011625, intron 1 of 16)	L2c|LINE|L2	13819.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	3.42434579375007	3.38805128283658	3.25635888955401	3.36387699322277	3.39385907485856	3.30504922830601	3.3581548214453	3.25477550947199	-0.100955282550896	0.844773305711484	0.941180176672266
Merged-chr4-141998510-2	chr4	141998410	141998610	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 2 of 31)	MLT1K|LTR|ERVL-MaLR	13141.0	NM_177868	329977.0	Mm.252019	NM_028429	ENSMUSG00000051435	Fhad1	2900090M10Rik|B230311F11	forkhead-associated (FHA) phosphopeptide binding domain 1	protein-coding	3.28397202287556	3.27839024981903	3.40419002476517	3.12058776477833	3.19864154965584	3.96147502683284	3.33276544756141	3.51191950252308	0.88122092553217	0.112944473445599	0.371444336514893
Merged-chr7-96970580-2	chr7	96970480	96970680	+	851.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153591, intron 4 of 13)	intron (NM_153591, intron 4 of 13)	19053.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	3.62915359305486	3.03888488902102	2.98744879405777	3.28686247864735	3.69587895043258	3.37209114824286	3.24678720484003	3.53208085044269	0.743537524284133	0.207137427178764	0.511157777324824
Merged-chr7-43553318-4	chr7	43553214	43553414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-9056.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	5.49727461137063	5.4550135285413	5.79205313882327	5.82046624707548	5.2878725580878	5.2200064203814	5.35606050061222	5.52163554030614	-0.542981240055004	0.0570832904203029	0.250391800720383
Merged-chr14-120293234-3	chr14	120293087	120293287	+	834.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	-13265.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	3.43987987056639	3.45529477787885	3.49472230451972	3.90492243874344	3.12958298512872	3.49779083041392	3.18693739316807	3.38180981511663	-1.0521480724222	0.0594717407331063	0.25708362891059
Merged-chr11-58328297-2	chr11	58328175	58328375	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256520, intron 1 of 2)	MER67B|LTR|ERV1	2064.0	NM_001256520	319475.0	Mm.72124	NM_178761	ENSMUSG00000049755	Zfp672	4930488P06Rik|4930511N19Rik|Znf672	zinc finger protein 672	protein-coding	3.16742012367521	3.18785537326544	3.23107712953345	3.57271073757494	3.60231838680676	3.46190743595687	3.33787401343121	3.55734280763081	0.611518847289891	0.269768440459829	0.581539350782585
Merged-chr8-41019870-4	chr8	41019738	41019938	+	974.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015457, intron 2 of 2)	B3|SINE|B2	2370.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	4.78796812967695	4.83751698813721	5.03682658264607	4.71286544968184	4.78155670209953	4.75700523744132	5.29605411102612	5.06511016024237	0.300521650866319	0.378126511360304	0.680729094848376
Merged-chr5-48372383-4	chr5	48372285	48372485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025755)	promoter-TSS (NM_025755)	-7.0	NM_025755	66768.0	Mm.29409	NM_025755	ENSMUSG00000029089	Pacrgl	4933428G09Rik	PARK2 co-regulated-like	protein-coding	7.55944027143284	7.31309341900085	7.25560480153773	7.56335098730857	7.33983771125999	7.51896604875712	7.61579015515408	7.44610887275858	0.057001783649905	0.758885497789155	0.905374280076611
Merged-chr13-81108657-4	chr13	81108575	81108775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	144601.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	6.08166944610511	5.97797173583377	6.27611351141277	6.47193893947195	5.69086495552877	6.08057317345088	6.09252095103037	6.15928807260893	-0.343011074175732	0.190971262989098	0.490311892807621
Merged-chr18-24223733-4	chr18	24223664	24223864	+	931.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361200, intron 1 of 12)	intron (NM_001361200, intron 1 of 12)	17770.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	4.78964972192065	4.85087215002131	5.08553105179409	5.24709432819647	4.825262978586	4.43386671197996	4.48185471201091	4.45206199404839	-0.927357671193397	0.0120583044730446	0.0902439934440905
Merged-chr2-129398454-4	chr2	129398363	129398563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16|LTR|ERVK	-27324.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	6.1432746465888	6.13016043964168	5.56585514372612	5.78563309828823	6.2012546147322	5.77583362336671	6.16925673665973	6.23305852653909	0.296634891317323	0.270560894583449	0.582383389245051
Merged-chr6-89413720-4	chr6	89413612	89413812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 5 of 6)	intron (NM_001167736, intron 5 of 6)	-51099.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	6.08196045338436	6.53238657810344	5.77577089992769	5.49030781574352	6.31042530017238	6.50471158372412	6.1520747227501	5.99182582964004	0.353359072595373	0.252710716753127	0.563984491060167
Merged-chr2-16335464-4	chr2	16335371	16335571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20833.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	7.10065143604912	6.20421025125665	7.42458676478328	7.531766561635	6.55180888432313	6.01533540778066	6.75154573189433	6.9553013664355	-0.763133770312266	0.112728443054863	0.371270490847775
Merged-chr3-105720307-2	chr3	105720207	105720407	+	654.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175398, exon 2 of 2)	3' UTR (NM_175398, exon 2 of 2)	14849.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	2.62691087559559	2.73439611220854	2.55226271554779	2.61872146388098	2.74483174841308	2.87465182450415	3.04571711455772	3.15794010726186	1.50309400395701	0.0191976731175522	0.124428262141163
Merged-chr1-166204326-2	chr1	166204226	166204426	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175296, intron 10 of 11)	intron (NM_175296, intron 10 of 11)	34418.0	NM_175296	98558.0	Mm.26189	NM_175296	ENSMUSG00000040629	Mael	4933405K18Rik|AU019877	maelstrom spermatogenic transposon silencer	protein-coding	2.87206547151401	2.72411159680363	2.80978259476447	2.97811259460634	2.63601588161428	2.91654469650718	2.86215464185126	2.98755178849711	-0.0149981249153507	0.981075616717638	0.993158894121212
Merged-chr4-152124648-3	chr4	152124543	152124743	+	769.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207689, intron 7 of 9)	ORR1A3-int|LTR|ERVL-MaLR	4282.0	NM_019585	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	3.57037121139014	3.61242919338875	3.51681172162463	3.41361069651505	3.44059684228492	3.45307910493843	3.60772674611013	3.71770424630715	0.110271735180566	0.82197396642289	0.931941461548501
Merged-chr18-62253999-4	chr18	62253878	62254078	+	889.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70226.0	NM_008313	15562.0	Mm.20440	NM_008313	ENSMUSG00000026322	Htr4	5-HT-4|5-HT4|5-HT<4L>|5HTR4	5 hydroxytryptamine (serotonin) receptor 4	protein-coding	4.19438879971791	4.36712812776282	4.09499473886516	4.39968670531976	4.63986488733551	4.21983398391676	4.22392927102956	4.45261733431396	0.297993963312707	0.456866992000341	0.740186088760238
Merged-chr18-66459781-3	chr18	66459683	66459883	+	709.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021451, intron 1 of 2)	PB1D10|SINE|Alu	1179.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	3.49337286712799	3.76059405248671	3.49382285201367	3.76097927646628	3.47065251687479	3.28034894320545	3.48080580194903	3.96789598800352	-0.201851150244847	0.705071249989245	0.881587544161158
Merged-chr2-105675466-4	chr2	105675368	105675568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013627)	promoter-TSS (NM_013627)	-276.0	NM_001244200	18508.0	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	5.18567586336805	5.25551513015066	5.46826066926647	5.74414217074685	4.40620166879119	4.63318949268602	5.19162052478451	5.24447831737572	-0.994138659190174	0.00864008609081732	0.0710071224868129
Merged-chr14-59341408-4	chr14	59341306	59341506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164327)	promoter-TSS (NM_001164327)	-76.0	NM_001164327	236451.0	Mm.247736	NM_001164327	ENSMUSG00000091649	Phf11b	EG236451|Gm4902	PHD finger protein 11B	protein-coding	6.55924695116575	6.65814096754802	6.57664216444304	6.42934032444797	6.89931181113117	6.33966106390618	6.73611484267171	6.84598951706469	0.259764594706086	0.243231240206401	0.554234755376378
Merged-chr19-47216923-3	chr19	47216816	47217016	+	844.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021360, intron 1 of 5)	ID_B1|SINE|B4	-11927.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	4.2683120652029	4.04093341455187	4.41297914271297	4.44833545523354	3.44134874250319	3.41312093294947	3.50042691047946	3.63972593369256	-2.50620530895962	1.13903612313229e-06	3.93952634637673e-05
Merged-chr1-184563081-4	chr1	184562977	184563177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5386.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	6.56495974194664	6.81102650533952	6.86922764534687	6.61776469360746	6.74452194578695	6.51177844607214	6.39544831102013	6.67074939640983	-0.174728518237298	0.418464821617231	0.71194739798154
Merged-chr1-152594880-4	chr1	152594774	152594974	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	30343.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.39326101617603	4.92354345297176	4.78999901140183	4.48513235116581	4.62109540884196	4.65790100976313	4.37467361602631	4.39123514601699	-0.307623741300028	0.41867156570371	0.712018284205586
Merged-chr6-13678073-4	chr6	13677962	13678162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175312)	promoter-TSS (NM_175312)	-96.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	8.87409159410801	8.84152116425383	8.99995250421969	9.14410010572811	8.82339778008532	8.83479090095966	9.04068822707674	8.68841094225238	-0.151797594682805	0.340698458180359	0.649787696691071
Merged-chr15-8340791-4	chr15	8340716	8340916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 11 of 45)	intron (NM_201232, intron 11 of 45)	103647.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	6.35382566145638	6.48208028704197	6.33626119472203	6.73720423212917	6.61755773659609	6.58556096696702	6.32247867553084	6.42245802481545	-0.0139322594082483	0.951587127668279	0.982792981377963
Merged-chr7-121271273-3	chr7	121271163	121271363	+	876.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-121033.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	4.22189571657008	4.41645634022351	4.34746665484961	3.94170497667149	3.9835693003508	3.99557388811419	4.24609343388839	4.03199359656818	-0.427741126334007	0.318961424503764	0.630823985405764
Merged-chr4-43384257-3	chr4	43384157	43384357	+	956.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 1 of 11)	intron (NM_001037709, intron 1 of 11)	2275.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	3.97560759202203	3.67209219257955	3.74329781349878	3.9813265492687	4.51157458109868	4.55567193265311	4.20051646054674	4.49494638892936	1.46909943777447	0.000593732639538909	0.00886352675120385
Merged-chr7-28440912-4	chr7	28440785	28440985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039192)	promoter-TSS (NM_001039192)	-52.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	7.38380762800654	7.09807179166576	7.08793977994537	7.07261491389549	7.09960412890698	7.07162472207995	7.3762783283354	6.87516405254761	-0.0585727933867852	0.773811063772865	0.91166330938482
Merged-chr13-117024557-4	chr13	117024507	117024707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 2 of 26)	CpG	909.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	5.75277575875111	5.7302657759151	6.19965490657646	5.34167415313063	5.90383036438426	5.6908206934904	5.54270594244237	5.64842851039692	-0.108898719847999	0.72135123174323	0.888753092785481
Merged-chr16-35817489-4	chr16	35817399	35817599	+	866.337524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152314, intron 6 of 8)	intron (NR_152314, intron 6 of 8)	47113.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	4.2080048234683	4.19706563604779	3.95279722564645	4.43467011162133	4.59271607614205	4.28668285605546	4.27915725637328	4.20609158418867	0.320625888335097	0.440149425119237	0.727657961132312
Merged-chr12-112688551-4	chr12	112688494	112688694	+	970.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9754.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	5.23922573905761	5.33403859730157	5.2694885795669	5.35212075224675	4.97186298641939	4.68395850780214	5.0903255988247	5.07862540850015	-0.6351954345985	0.0391876360745076	0.199132768515756
Merged-chr8-8704995-4	chr8	8704902	8705102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-14465.0	NM_176849	234023.0	Mm.251655	NM_176849	ENSMUSG00000040459	Arglu1	9430010O03Rik|C130008N12	arginine and glutamate rich 1	protein-coding	5.35617473952467	5.3070434511481	5.85869188038992	5.81575348197113	5.83366678330332	5.65680220943693	5.73903739424232	5.61549136797857	0.162846871612976	0.571706181245587	0.810781529929199
Merged-chr7-81204759-4	chr7	81204738	81204938	+	686.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8966.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	3.04568711777956	3.28736195277904	3.04603200704174	3.07232414719477	3.04167640050544	3.15493160427981	3.31567983001683	3.22215180598816	0.264597647585147	0.635215898908667	0.845633612363053
Merged-chr12-111071257-4	chr12	111071162	111071362	+	963.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198023, intron 2 of 11)	intron (NM_198023, intron 2 of 11)	31464.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	5.3056356483931	5.83306308156548	4.93732015250406	5.23581804822824	5.19923207575412	5.22574509450384	4.8345536999968	5.045551268768	-0.521198194514731	0.134308416672376	0.407935723647066
Merged-chr19-37172925-4	chr19	37172823	37173023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045329)	promoter-TSS (NR_045329)	-920.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	5.54472968241129	5.47388365852604	5.54569684888498	6.20769024011243	5.1730211042762	5.42063448566269	5.49056232958142	5.45799139868002	-0.633244125623389	0.0477917981056154	0.225521903829197
Merged-chr10-128176658-4	chr10	128176560	128176760	+	980.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019711)	promoter-TSS (NM_019711)	-92.0	NM_019711	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	5.4404860080305	5.13858338011966	5.15063252071015	5.15556050437084	5.43946232165347	4.99649470101206	5.09264566627266	5.17937319890117	-0.0349173577124724	0.910169274897015	0.966671146059764
Merged-chr6-32487566-4	chr6	32487471	32487671	+	948.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-23570.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	5.00166227208637	5.04047701396874	5.15393185016642	5.03871851173451	4.60889391565752	4.80845261630621	4.4756797069788	4.62821671229171	-0.880812343098701	0.00813500531050692	0.0679546465199591
Merged-chr14-8102763-4	chr14	8102634	8102834	+	922.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	4523.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	4.80611395732133	4.66686078727608	5.41730163081421	5.42192704134922	4.65369780127393	4.86266833592266	4.96496257041695	4.76398659338873	-0.635709074779701	0.0882093842277703	0.323976045404977
Merged-chr5-130172470-4	chr5	130172365	130172565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359233, intron 1 of 7)	intron (NM_001359233, intron 1 of 7)	646.0	NM_001359233	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	7.16196987624934	7.36683469740259	7.1278815902348	7.25411656946913	7.48905972067583	7.35197724699198	7.57867380432136	6.88726122893823	0.166380256770978	0.431628465072046	0.72175353009052
Merged-chr1-143992752-4	chr1	143992760	143992960	+	971.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	11289.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	4.6865010169083	4.31187130032975	4.54349708216718	4.46922481746719	4.41001322612919	4.21663573841742	4.36143375593253	4.24155603027687	-0.441896192362268	0.246551009168954	0.557792075571706
Merged-chr10-40189863-4	chr10	40189780	40189980	+	831.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6-int|LTR|ERV1	-47626.0	NM_001114332	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	3.53893072871187	3.52484703264189	3.65246959614433	3.93068315466273	3.8566026437155	3.71249213422221	3.74167125389543	3.89642019062143	0.341867348505891	0.480119069608675	0.755678709554239
Merged-chr7-97081609-4	chr7	97081465	97081665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010248)	promoter-TSS (NM_010248)	-186.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	6.9503114038503	6.75607708950185	7.08692740441506	7.12540840417854	7.17717022075484	6.96234995083758	7.06282762360858	6.92035796716858	0.0643934791919218	0.748294601027572	0.900930235736524
Merged-chr12-100538637-4	chr12	100538531	100538731	+	819.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17809.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	3.94357725489799	4.14425279328883	3.72248259634732	3.87461513458685	3.90270594038133	4.42640641256091	3.92766512754132	4.13104543444785	0.47196309584722	0.291427063476231	0.60371229002408
Merged-chr15-84325296-4	chr15	84325156	84325356	+	866.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162500)	promoter-TSS (NM_001162500)	536.0	NM_022321	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	4.13747397493231	4.09216016847035	4.13809597780496	3.88720914089403	4.16334488013411	4.16511109944515	4.25218009581157	4.42733324907121	0.511641385545418	0.204699419393836	0.508129404704835
Merged-chr9-108832577-4	chr9	108832457	108832657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359572, intron 2 of 35)	CpG	6512.0	NM_001359572	107934.0	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3	protein-coding	7.24291127116556	7.77124714682452	7.63678626480255	7.41284119914881	7.64496003043492	7.69025990324832	7.91652251713291	7.33872528442342	0.176148894569481	0.397048735533161	0.695573922424755
Merged-chr3-14572122-3	chr3	14572015	14572215	+	817.144409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028915, intron 18 of 18)	intron (NM_028915, intron 18 of 18)	-6556.0	NM_007892	13559.0	Mm.153415	NM_007892	ENSMUSG00000027552	E2f5	AU024671|E2F-5	E2F transcription factor 5	protein-coding	4.16786435820505	4.18607055748331	4.07481890855581	4.66354965765477	4.02825171030618	3.80179890432253	3.84970132807951	4.29447223735153	-0.772960064294301	0.0930213071802933	0.3336668813899
Merged-chr5-100429653-4	chr5	100429562	100429762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_034038)	promoter-TSS (NR_034038)	-127.0	NR_034038	100503199.0	Mm.392282	NR_034038	ENSMUSG00000097772	5430416N02Rik	100041797|Adapt33|Gm3514	RIKEN cDNA 5430416N02 gene	ncRNA	8.55367226968359	8.72025988545932	8.41935966720544	8.59695343196956	8.59130855686877	8.68428137921695	8.58948942513473	8.5962468603606	0.0443740513964488	0.766749996971422	0.908716130899153
Merged-chr4-43442256-4	chr4	43442173	43442373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011571)	promoter-TSS (NM_011571)	-4.0	NM_011571	21754.0	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	8.13375771324943	8.27023107927712	7.85031073140759	7.97248282071648	8.16013540719243	8.44804337477674	8.25890521154432	7.97101814223134	0.196322571675487	0.284079630596014	0.596035490823689
Merged-chr17-35870409-4	chr17	35870321	35870521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146710, intron 2 of 3)	intron (NM_001146710, intron 2 of 3)	3806.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	7.07869056493934	6.74912545497089	6.96063007537806	7.06221545928948	6.7785405310158	6.77830451661671	6.82148745212283	6.67663651727971	-0.291268441296126	0.144402880903186	0.423506982340208
Merged-chr19-9976392-4	chr19	9976305	9976505	+	963.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4195.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	5.07022739672671	5.20032916698402	5.42964939646802	5.54221244518584	5.20207002405257	4.94136972084195	5.20714314192881	4.80039774876134	-0.519660346548162	0.108620640626223	0.363852820327258
Merged-chr10-63428826-3	chr10	63428752	63428952	+	844.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1246.0	NM_177612	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	3.3232776601089	3.45613963956174	3.12589675610296	3.18122132111033	3.69021846536615	3.61286868430676	3.37092582264178	3.73752531287523	1.14482343483615	0.0265715112667866	0.154672358558931
Merged-chr3-95668175-4	chr3	95668083	95668283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9462.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	6.2769164444752	6.29971773005482	6.27802605955607	6.19934591588074	6.46988866614693	6.63170861553065	6.53434986467866	6.25422697608626	0.326171003259817	0.135946527313145	0.410349387415563
Merged-chr3-88331486-3	chr3	88331382	88331582	+	812.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024246, intron 3 of 3)	intron (NM_024246, intron 3 of 3)	2951.0	NM_024246	71913.0	Mm.34256	NM_024246	ENSMUSG00000001420	Tmem79	2310042N02Rik|2310074C17Rik|Matt|ma	transmembrane protein 79	protein-coding	3.7632165569574	3.70703589196771	3.54135620099109	3.49452416738252	3.8886933644446	3.65864600100379	3.79761039829513	4.07616561972743	0.726908012318498	0.117327945044218	0.378829022467788
Merged-chr6-83775856-4	chr6	83775769	83775969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009357)	promoter-TSS (NM_009357)	-57.0	NM_009357	21766.0	Mm.28371	NM_009357	ENSMUSG00000014748	Tex261	3110001O07Rik|AA409339|AI480706|AL033351|TEG-261	testis expressed gene 261	protein-coding	7.08332238870188	6.9682755795605	6.84282855876947	7.14248985407305	6.79703892429338	6.94785014698945	6.79407998565206	7.0795701336477	-0.1628331130856	0.415004320657041	0.709431580225999
Merged-chr2-58933550-3	chr2	58933458	58933658	+	911.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	178374.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	3.67921848025658	3.44459454104896	3.6797633209231	4.03306057133846	3.2031488481041	3.39290956131129	3.39459639783461	3.57534739340239	-1.15309154425357	0.0327361892193069	0.177371486065391
Merged-chr7-45466797-4	chr7	45466691	45466891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007527, exon 1 of 6)	5' UTR (NM_007527, exon 1 of 6)	107.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	6.31527037140206	6.40417801673504	6.67961210378328	6.23560470777315	6.48887726480302	6.6198636747964	6.33992797845906	6.75794584432322	0.219942517774167	0.340602788177292	0.649688226489213
Merged-chr7-102234160-3	chr7	102234054	102234254	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111937, intron 2 of 5)	intron (NR_111937, intron 2 of 5)	11126.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	4.52758307666649	4.36143386607643	4.1681430228569	3.66504209259636	5.02206847993689	4.91481962034395	4.09792143910762	4.21629733396891	0.933501250157	0.0556049355848367	0.246839557620234
Merged-chr3-115712982-4	chr3	115712889	115713089	+	941.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007901, exon 2 of 2)	5' UTR (NM_007901, exon 2 of 2)	2066.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	3.95750330724023	3.85105223207318	4.00771816496879	4.06028516557166	4.1970746745251	4.02850115081529	4.39799399990094	3.73635830486186	0.368758954621936	0.405840274693273	0.702456276834042
Merged-chr10-30200569-4	chr10	30200479	30200679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109747)	promoter-TSS (NM_001109747)	-39.0	NM_001109747	66311.0	Mm.251779	NM_001109747	ENSMUSG00000075266	Cenpw	2610036L11Rik|Cug2	centromere protein W	protein-coding	6.42663798985661	6.72126833903314	7.03956763069979	7.11105304578393	6.91851693499561	6.81708212075596	7.15874282896949	6.87085186190372	0.116228665408981	0.618040163972225	0.835831449144608
Merged-chr5-35757809-4	chr5	35757700	35757900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177696)	promoter-TSS (NM_001177696)	-80.0	NM_001177697	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	7.68434383000041	7.93375542019798	7.53430214835155	7.84628248465863	7.78826359137402	7.77634371196123	7.91103412022708	7.76153414852915	0.0579260943796681	0.740113815891315	0.897683586969888
Merged-chr17-67304449-4	chr17	67304336	67304536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	50023.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	5.67983692783649	5.95705704667207	5.46924141692589	5.89849041135894	6.44314090572635	5.96569637929066	6.22299698130875	6.35273022034847	0.758630464671791	0.00383373543332681	0.038756065105634
Merged-chr10-4433615-3	chr10	4433582	4433782	+	846.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024261, intron 1 of 4)	intron (NM_024261, intron 1 of 4)	1077.0	NM_024261	73419.0	Mm.346733	NM_024261	ENSMUSG00000061759	Armt1	1700052N19Rik|AW320013|AW536799	acidic residue methyltransferase 1	protein-coding	2.62440292094927	2.5369854155954	2.74107527435974	2.52749955461494	2.65262282197075	2.29501986609761	2.48908696982733	2.49561523252784	-0.597169410562976	0.4079878208656	0.704106417936973
Merged-chr9-120582372-3	chr9	120582262	120582462	+	856.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5031.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	3.65155115164217	3.22418465610505	3.50568640749592	3.21526249590542	3.44767524288586	3.33054913870274	3.00076718855188	3.6497970083064	-0.093625739583799	0.871809386554868	0.95183223179801
Merged-chr1-193894279-4	chr1	193894180	193894380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	328479.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	7.33511877071607	7.0257205477539	7.16729555519445	7.40554054845033	7.18956953597101	7.09527003512106	7.04982896746885	7.06835675772867	-0.19688989957386	0.307073476389378	0.619334608547937
Merged-chr5-20951892-4	chr5	20951784	20951984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080977)	promoter-TSS (NM_001080977)	-62.0	NM_001080977	242860.0	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	8.12299895527617	8.07981737537282	8.07296283379956	8.28438397395658	8.10788312123726	8.32668899232107	8.3951354506188	7.95850536691744	0.0743763763203399	0.668567052124484	0.863085300309568
Merged-chr3-19310868-2	chr3	19310768	19310968	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001122759, exon 1 of 13)	exon (NM_001122759, exon 1 of 13)	454.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	4.51561289896141	4.47525954503114	4.95133000351366	4.64562388204709	4.61159812093127	4.81228096301273	4.40745034232916	4.67545119222953	-0.0542722713160477	0.881757788436087	0.955451670099647
Merged-chr7-25178390-3	chr7	25178296	25178496	+	754.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23327.0	NR_045848	434147.0	Mm.59171	NM_001033781	ENSMUSG00000074274	D930028M14Rik	EG434147	RIKEN cDNA D930028M14 gene	ncRNA	2.8953967476988	3.29743787511755	3.20258249542628	2.59591395648926	3.06500842828316	3.13921758202859	3.01610509323939	3.14490758493872	0.266563483802262	0.680813448236544	0.868956507598538
Merged-chr4-5644562-1	chr4	5644462	5644662	+	871.0	f0_balb.idr	intron (NM_173426, intron 1 of 2)	CpG	472.0	NM_173426	242297.0	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	3.80209214101003	4.02129238906887	4.65851699537387	4.01867098972125	4.00042060818473	4.14096326816138	3.84391588526508	3.85712404292144	-0.511634622267101	0.281784959171752	0.593952193102732
Merged-chr11-23023339-3	chr11	23023247	23023447	+	711.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028672, intron 3 of 3)	intron (NM_028672, intron 3 of 3)	9960.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	3.46830903645955	3.29248626694895	3.20770480108458	3.25068590821129	3.67569212543085	3.58726213005283	3.9388990741351	4.0338309599559	1.65415769167815	0.000959902273990614	0.0130241868014445
Merged-chr8-13596172-5	chr8	13595970	13596170	+	909.9428710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 5 of 23)	intron (NM_009025, intron 5 of 23)	-33609.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	3.41320452685098	3.2945274925301	3.63015023964998	3.07649393197112	3.83001126359066	3.40530168080226	3.45755038048545	3.72371019637682	0.880944257441178	0.101797601167223	0.350149062993244
Merged-chr15-97213298-4	chr15	97213206	97213406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33801.0	NM_172293	239647.0	Mm.130036	NM_172293	ENSMUSG00000044250	Pced1b	Fam113b	PC-esterase domain containing 1B	protein-coding	6.0104789669028	6.04901658841559	5.80030079444977	6.09735866678291	6.09596339355617	6.09784575735475	6.25050845227464	5.82145253213878	0.113810749594005	0.642646353332163	0.849309266102231
Merged-chr19-8980971-4	chr19	8980875	8981075	+	982.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8309.0	NR_104460	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	5.22933618642121	4.90402349273775	5.04135320427962	4.72736799160472	5.18985447666776	5.14704667147844	5.48788044683772	4.64489531830393	0.340493601105193	0.336403693918353	0.646407648662756
Merged-chr8-84857341-3	chr8	84857233	84857433	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152751, intron 1 of 12)	intron (NR_152751, intron 1 of 12)	347.0	NM_025648	66590.0	Mm.292517	NM_025648	ENSMUSG00000003808	Farsa	0610012A19Rik|Farsla|pheRS	phenylalanyl-tRNA synthetase, alpha subunit	protein-coding	4.53194930085829	4.85769262543795	4.68989732238484	4.52841150514651	4.66402168544426	4.48326095188584	4.77290050067489	4.19879945744262	-0.221627203647504	0.5585753615545	0.803265195951014
Merged-chr14-51220222-1	chr14	51220122	51220322	+	816.5	f0_balb.idr	Intergenic	Intergenic	16527.0	NM_017389	503847.0	Mm.377124	NM_017389	ENSMUSG00000050766	Ear14	-	eosinophil-associated, ribonuclease A family, member 14	protein-coding	3.92602755019744	3.61941824417303	4.65513494902687	4.41968222204676	2.95950806655669	3.4013065151723	3.11195992559515	3.34921183154258	-3.71467795912984	1.97844275644601e-07	7.98772416114976e-06
Merged-chr6-128760178-4	chr6	128760052	128760252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	28489.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	5.80443986784396	5.96920567454077	5.44198543235369	5.30124434529854	5.97946829409958	5.93250208322595	6.14966525276127	6.2472053474416	0.705280860027049	0.0125029004031082	0.092446654481466
Merged-chr2-58732464-3	chr2	58732333	58732533	+	625.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	-22751.0	NM_001289659	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	2.69997826070266	2.81976200103254	2.90881451593709	2.85950044310603	3.21128068138382	3.017261458495	3.18258668477476	3.08726669672763	1.26957044769759	0.0316713525537558	0.173541522042107
Merged-chr10-125265217-3	chr10	125265133	125265333	+	830.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 3 of 5)	B3|SINE|B2	43583.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	3.68395638840785	3.54710352104355	3.97034384680628	3.73416283365099	3.4774049928429	3.50209800819767	4.07220652798651	3.62796691945427	-0.1484298954875	0.769702775536824	0.909839341090846
Merged-chr5-75929168-2	chr5	75929010	75929210	+	621.166626	f0_balb.idr|f1_balb.idr	Intergenic	L1_Mus3|LINE|L1	49318.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	2.66450962681316	2.49278706072471	2.6118827698971	2.06662709569215	1.96180397304804	2.10528379379016	1.9964600845014	1.99978503501556	-4.02881634225395	0.00049551981543817	0.00766187225832399
Merged-chr18-35747080-4	chr18	35746956	35747156	+	844.6124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6502.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	3.6566092029752	3.82800149420182	3.90994961524097	3.56154784022812	3.43208915214993	4.0326450843809	3.74850595208667	3.76205166999783	0.0425914558629647	0.930928257288804	0.97518506813215
Merged-chr11-107327517-4	chr11	107327388	107327588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-138107.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	7.67293585034765	7.04445127043238	7.46158514858602	7.5386503595111	7.29625864867098	7.01648248392112	7.39659034877647	7.35004276713442	-0.235043515497292	0.263513302790302	0.575550442766298
Merged-chr3-131271402-4	chr3	131271296	131271496	+	926.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008212, intron 1 of 7)	intron (NM_008212, intron 1 of 7)	705.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	4.4237275355816	4.68031764137672	4.66933207224847	4.1451851939455	4.7337193454618	4.35989708273711	4.7185561046996	4.70277451058741	0.353979958738438	0.360374061542485	0.665793074685122
Merged-chr5-90364742-4	chr5	90364638	90364838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198010, intron 1 of 32)	intron (NM_198010, intron 1 of 32)	1447.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	5.38538526416981	5.75857222563314	5.14887894775406	5.20471387736206	5.89414149928711	5.50113329574275	5.86102385655228	5.82316962783628	0.66456761400433	0.0239834057774263	0.144438179188716
Merged-chr2-24910716-2	chr2	24910616	24910816	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001012518, intron 1 of 26)	B3A|SINE|B2	8893.0	NM_172545	77683.0	Mm.24176	NM_172545	ENSMUSG00000036893	Ehmt1	9230102N17Rik|D330003E03|Eu-HMTase1|GLP|GLP1|KMT1D|mKIAA1876	euchromatic histone methyltransferase 1	protein-coding	3.4948814229376	3.41915239143643	3.43921640513526	3.61229859433419	3.39059829321183	3.55312756786076	3.58592570043703	3.59867239111423	0.0904736709367456	0.854709122918117	0.945281012137986
Merged-chr15-78244806-4	chr15	78244716	78244916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008677)	promoter-TSS (NM_008677)	5.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	7.87024967710093	8.07499047516345	7.94713100348994	7.46601927255341	7.64373669567952	7.51952497655479	7.65124575332825	7.08609711591552	-0.4653154908994	0.0333039702003994	0.17935562494471
Merged-chr6-97815974-3	chr6	97815902	97816102	+	968.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	8944.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	3.88737781266749	4.1836973805032	3.72706185258486	4.10109657351851	3.87905412438651	4.0087804601737	3.71311280820507	3.88569350883388	-0.340019969908166	0.45208147555328	0.736506542500902
Merged-chr17-81064435-4	chr17	81064385	81064585	+	855.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028138, intron 1 of 9)	intron (NM_028138, intron 1 of 9)	600.0	NM_028138	72167.0	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	4.39242668428415	4.20768861393918	4.39312177792875	4.14591269608309	4.44411663615718	4.29800224612147	4.2015528813671	4.21720515589569	0.0587856754550477	0.880417013791079	0.95517036814656
Merged-chr5-105157777-2	chr5	105157677	105157877	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18191.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	2.80128343317431	2.70871483204542	3.12565163487816	2.75216054410489	2.78835095746368	2.70739909548918	2.59558728549161	2.60168395298438	-0.832641861433049	0.215526451106301	0.521712540836435
Merged-chr8-120108815-2	chr8	120108715	120108915	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5337.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	2.93818499016648	2.7273675808352	3.35005913205767	2.83650464794657	3.19712567434245	3.11757991062673	3.28438085628897	3.34796566607209	1.03091992310583	0.0919983393582688	0.331713175481598
Merged-chr12-39230956-3	chr12	39230855	39231055	+	969.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	447244.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	4.2886216672979	3.98705520282185	4.48581196421266	4.60226452312481	3.8264606493351	3.76495922873384	4.03977632421027	4.48277082923237	-0.774520205578848	0.10146024387535	0.349490825767668
Merged-chr6-133105447-6	chr6	133105333	133105533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163445, exon 1 of 1)	exon (NM_001163445, exon 1 of 1)	194.0	NR_073368	381820.0	Mm.291762	NM_001163445	ENSMUSG00000072704	Smim10l1	2700089E24Rik|AI662692	small integral membrane protein 10 like 1	protein-coding	6.87160383436018	6.80331453409433	7.30758693191223	6.72386015635348	6.6172893541174	6.78392905647474	6.66741669562148	6.85453076547316	-0.290869606271784	0.194179851785833	0.494609868894025
Merged-chr5-101765714-4	chr5	101765559	101765759	+	997.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173370, intron 1 of 12)	CpG	529.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	4.43252178118824	4.77048752856119	4.56145211145341	4.7181311859236	4.28719898554724	4.98703575147856	4.41342703618049	4.38478688264651	-0.207579440735317	0.598070669649698	0.825700950899405
Merged-chr19-42099621-4	chr19	42099528	42099728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145501, intron 1 of 8)	L2|LINE|L2	9193.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	6.89702646765189	7.03077404228172	6.52192167092939	6.72091300145516	6.00729856663445	6.0880609874585	6.38735896317858	6.0510506489289	-0.98546795719014	3.1850027485729e-05	0.000763574640083093
Merged-chr14-70100852-4	chr14	70100739	70100939	+	939.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	746.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	4.39134599407823	4.35723305668238	4.30204506891872	4.1258971049058	4.61204162642996	4.47684461790641	4.53353505866346	4.58960862433219	0.63644070691481	0.0822606282636052	0.311365554861747
Merged-chr9-123722909-4	chr9	123722808	123723008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5283.0	NR_151689	93730.0	Mm.378263	NM_033322	ENSMUSG00000025245	Lztfl1	5530402H04Rik|6130400H19Rik|AI414725|AW048545	leucine zipper transcription factor-like 1	protein-coding	5.69983221825502	6.21362572552806	5.77628235071918	5.09655187665863	6.00144015116956	6.11090888392072	5.81751031416097	5.53122099699181	0.218834102785346	0.513972717375171	0.776799740756736
Merged-chr1-89455647-4	chr1	89455554	89455754	+	860.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	CpG	843.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	3.66425609657013	3.99444647089856	3.87564708585168	3.71210522539494	3.94461633762452	3.7825795066607	3.75935418611979	3.92102059948572	0.130299748301593	0.772073398724176	0.910726384110984
Merged-chr7-116524712-4	chr7	116524625	116524825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360375, intron 5 of 14)	intron (NM_001360375, intron 5 of 14)	20356.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	5.12680076573415	4.89683584022959	5.12766388668946	5.66256074146876	5.09700819438524	5.12570106843808	5.47525002416944	5.25191656658518	-0.0305934444067431	0.929145876372342	0.974317157505369
Merged-chr11-114851784-4	chr11	114851734	114851934	+	845.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_147217)	promoter-TSS (NM_147217)	-196.0	NM_147217	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	4.61530819752877	4.37530927771685	4.26092140698121	4.01981617542733	4.23196973447545	4.63998017038517	3.93939396494288	4.16402658622923	-0.143827356371564	0.743457431701684	0.89894073126818
Merged-chr5-103629174-2	chr5	103629074	103629274	+	822.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029415, exon 1 of 6)	exon (NM_029415, exon 1 of 6)	229.0	NM_029415	75750.0	Mm.7446	NM_029415	ENSMUSG00000029321	Slc10a6	8430417G17Rik|C78479|Soat	solute carrier family 10 (sodium/bile acid cotransporter family), member 6	protein-coding	3.07559792936986	2.91435394757007	3.5233838546384	2.87853143687378	2.95294821191664	3.06193168927893	2.87496130452123	2.94970948423148	-0.644253398715144	0.307724373075304	0.620092097249018
Merged-chr13-17992104-3	chr13	17991986	17992186	+	649.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025904, intron 1 of 2)	intron (NM_025904, intron 1 of 2)	1265.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	3.66449580375466	3.33824425361504	3.41281305089222	3.39967700034586	3.21313536647819	3.5832463142694	3.28443252132918	3.2945145908804	-0.384537772696264	0.467999861270015	0.74728586771964
Merged-chr16-81330752-4	chr16	81330652	81330852	+	862.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113208, intron 1 of 17)	intron (NM_001113208, intron 1 of 17)	130055.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	3.9310867106641	3.73325346131638	3.55377562667578	3.92587672267959	4.01907376069336	3.90223573495954	3.96009357109919	3.7272476685131	0.301968525151689	0.510010066076863	0.77444280519008
Merged-chr5-118477866-4	chr5	118477756	118477956	+	951.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82863.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	5.62248647168506	6.07419613549294	5.15821029355492	4.74522069021562	5.66334523689952	5.7972742910885	5.09747093136755	4.74902152486692	-0.197075947116475	0.756165119083076	0.904159100355911
Merged-chr2-167254397-4	chr2	167254300	167254500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13863.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	5.33303803638645	5.18109028474459	5.76646095543156	6.61147044870495	5.85462332213622	5.58145806641699	5.76101687051915	5.96524665462892	-0.121964103326902	0.751980571806718	0.902329068825205
Merged-chr4-20033094-4	chr4	20032991	20033191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-8961.0	NM_010281	14590.0	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	6.03031899190655	6.56106910216978	6.07666530823481	6.24890879342164	6.4032491307317	6.25433896066332	6.64886232400381	6.36832281383373	0.261617786277785	0.281685750668196	0.593831004822045
Merged-chr4-55638577-4	chr4	55638472	55638672	+	785.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106097.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	3.51968196681167	3.91134584088773	3.63482029860319	4.07570132735729	3.54806000791932	3.50866415837439	3.67386999806875	3.78758887498635	-0.5681466452833	0.259001413597684	0.57079429993676
Merged-chr11-70372659-4	chr11	70372566	70372766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER63A|DNA|hAT-Blackjack	-20635.0	NM_009660	11687.0	Mm.4584	NM_009660	ENSMUSG00000018924	Alox15	12-LO|12/15-LO|15-LOX|Alox12l|L-12LO	arachidonate 15-lipoxygenase	protein-coding	6.2947871818413	6.02789917182469	5.7603891163275	6.09378019615388	5.61860824982455	6.03483913056279	5.80547857871203	5.78169709160365	-0.401587130424405	0.124823043711048	0.392172737029896
Merged-chr13-46162221-2	chr13	46162121	46162321	+	670.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111500.0	NM_001005422	380842.0	Mm.188108	NM_001005422	ENSMUSG00000063529	Stmnd1	Gm1574	stathmin domain containing 1	protein-coding	3.3097862543221	3.29423643743243	3.25051595165742	3.10148638034584	3.41889001668952	3.30006148474911	3.60325444783035	3.42002492063438	0.747604129814381	0.149291196835866	0.431488259447455
Merged-chr6-31502897-3	chr6	31502801	31503001	+	819.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 17 of 17)	intron (NM_013791, intron 17 of 17)	61036.0	NM_013723	27205.0	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1|Podxl1	podocalyxin-like	protein-coding	3.81028935951742	3.75107899171511	3.9582675965263	4.44993468255921	3.17975414312918	3.43153515336659	3.68764631672113	4.2071732763582	-0.956120101687962	0.112042678381749	0.369950840582101
Merged-chr11-46799044-3	chr11	46798947	46799147	+	692.650024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-11752.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	3.88208982769402	4.2212171175854	3.78106831595751	3.87605156695951	3.69094681067173	3.90095477260989	3.6570853425074	3.72509248294544	-0.60437092881728	0.191430479903808	0.490854206495116
Merged-chr3-98157305-3	chr3	98157190	98157390	+	755.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3344.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	3.77969902840241	3.83189059005305	3.56747485037831	3.56560008821564	3.62664564250102	3.84944858863123	3.4958412330398	3.8260258858998	0.0545239417290839	0.909134738874137	0.966215271274258
Merged-chr5-121712422-4	chr5	121712318	121712518	+	860.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	CpG	809.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	4.22781997051088	4.13399979896563	4.58286590354296	3.85488330512736	4.37449459590674	4.35604407368705	4.116511022388	4.17965760202816	0.131469047613527	0.761881548520999	0.90672517808069
Merged-chr11-115691253-3	chr11	115691152	115691352	+	820.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	8282.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	3.60485180624634	3.69868337505377	3.71211839080298	3.30687927378086	3.74440165125745	3.66580785047415	3.84000882993267	3.76011380806881	0.554762849483539	0.250208000930267	0.561249063980067
Merged-chr11-117344010-3	chr11	117343913	117344113	+	869.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113488, intron 1 of 9)	intron (NM_001113488, intron 1 of 9)	11700.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	3.78735406503555	3.28583516061383	3.61531966215809	3.26002921201331	3.16134949254458	3.22417348332899	3.16714097769662	3.11008520231661	-1.22715031525444	0.0334062896205779	0.1797237202557
Merged-chr17-35799168-2	chr17	35799068	35799268	+	771.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44D|DNA|TcMar-Tigger	-22545.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	3.23151494840973	3.33919808619819	2.91241133290125	2.89889169518914	2.97076181725733	3.34620835272578	3.16179819072812	3.38982958226901	0.453579541400302	0.446891313599682	0.732575443506555
Merged-chr14-48447080-3	chr14	48446993	48447193	+	651.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132324, intron 1 of 13)	intron (NR_132324, intron 1 of 13)	741.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	3.32889914006796	3.11083692619014	3.21408194294423	3.3999741236799	3.32691668411854	3.38468704082817	3.26092066330182	3.27130960247573	0.127833880632385	0.810587479029972	0.926854276252049
Merged-chr3-61442364-6	chr3	61442250	61442450	+	967.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77843.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	4.5098205735648	4.70601397413018	4.80683460769327	4.67769828672249	4.48759810139164	4.36009045773481	4.40464591792806	4.46529447313804	-0.550780895859728	0.124824145878369	0.392172737029896
Merged-chr19-11293109-4	chr19	11293027	11293227	+	954.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045317, intron 2 of 2)	intron (NR_045317, intron 2 of 2)	-9314.0	NM_183190	269063.0	Mm.268940	NM_183190	ENSMUSG00000054523	Ms4a5	-	membrane-spanning 4-domains, subfamily A, member 5	protein-coding	4.98911114093338	5.10928251851293	4.29817963883219	4.4035920503393	4.76868819367003	4.70283283666984	4.5903795128141	4.39176179614584	-0.25914698532391	0.531942762820782	0.787748963171131
Merged-chr1-181151340-4	chr1	181151263	181151463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030131, intron 1 of 4)	intron (NM_030131, intron 1 of 4)	432.0	NM_030131	98417.0	Mm.38229	NM_030131	ENSMUSG00000062169	Cnih4	AI647760|AW050376|CNIH-4|D530030D03Rik|E430023H19Rik|HSPC163	cornichon family AMPA receptor auxiliary protein 4	protein-coding	5.27188603773123	5.31663112134324	5.51167185354177	4.75811030211749	5.05848042920633	5.44546785142673	4.91687226749661	4.77630891977777	-0.298299423836624	0.409901699307611	0.70525942551561
Merged-chr12-40037484-4	chr12	40037399	40037599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007487)	promoter-TSS (NM_007487)	-123.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	8.70156440755588	8.5789970890095	8.47763554051256	8.83782665703996	8.61748786758649	8.72545990842129	9.06943130593076	8.56623803017295	0.123333729297081	0.490394893171168	0.762190664724398
Merged-chr14-73374497-4	chr14	73374397	73374597	+	873.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	10792.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	4.35207862938405	4.37006025188745	4.39836907132458	4.80617964310423	4.63952802862063	4.84822053318743	4.50545571154835	4.15023069690675	0.103100073783615	0.801207519005579	0.923340719847852
Merged-chr14-47241679-2	chr14	47241560	47241760	+	777.5	f0_balb.idr|f1_balb.idr	exon (NM_172598, exon 25 of 25)	exon (NM_172598, exon 25 of 25)	35197.0	NM_001360532	218973.0	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	3.50384872635694	3.31802539278976	3.69020374215712	3.66868216226181	2.76914986789437	3.06346422052239	3.27415497502775	3.16101289844892	-1.90512849542093	0.00248381401051858	0.0276285978207066
Merged-chr3-127398517-3	chr3	127398416	127398616	+	947.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327939, intron 1 of 45)	intron (NM_001327939, intron 1 of 45)	10542.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.14674717580936	3.04738002099984	3.23240486731651	2.40795092098855	4.37565668442084	4.95093133753947	4.44109897525557	4.5964674705906	7.86712178961091	2.71411854900762e-18	7.18171911523468e-16
Merged-chr1-9798147-5	chr1	9798076	9798276	+	951.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177547)	promoter-TSS (NM_177547)	46.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	4.45298811222777	4.3746756126013	4.32012995034491	4.25887931961983	4.8551430464835	4.8884901454578	4.43324245463577	4.06010528084292	0.584130198830839	0.155106038466292	0.440659883132123
Merged-chr11-110584435-1	chr11	110584335	110584535	+	716.0	f0_balb.idr	Intergenic	B1_Mur1|SINE|Alu	105095.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	2.8199432359211	2.81842588344308	2.99174930982672	3.52708440317713	2.27593901052153	2.41410611934895	2.38818922082369	2.39243360825374	-6.03356528310452	2.7342694782025e-07	1.07112034776541e-05
Merged-chr1-169370908-3	chr1	169370817	169371017	+	930.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	160547.0	NM_023284	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	3.63939769410522	3.15713396595375	3.81274813618119	3.55827039274639	3.07161693689457	3.31638882169781	3.05724677081618	3.26421668787994	-1.4018561447695	0.0165849627939512	0.112653980982026
Merged-chr12-112762267-4	chr12	112762184	112762384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178911, intron 1 of 10)	intron (NM_178911, intron 1 of 10)	1629.0	NM_178911	104759.0	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	7.33010374757139	7.00189234929367	7.26014278271451	7.36437838458016	6.88489801333021	7.08995903905001	7.05663771351527	7.20161983968677	-0.265118195137367	0.178088619479114	0.473852334381104
Merged-chr11-54888238-1	chr11	54888138	54888338	+	673.333313	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-14616.0	NM_001329860	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	3.15956147069269	3.44970545697908	3.50487049869864	2.66610205576587	2.52176311732242	2.88240152079386	2.83337368418147	2.84137872617031	-2.05370936335804	0.00584559863905824	0.0532673881748564
Merged-chr19-56743701-4	chr19	56743592	56743792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21320.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	5.2889708642624	5.53965672093754	5.81497105829461	5.78251223244265	5.2887959998476	5.18198700648736	5.49889530889099	5.57566051554136	-0.414338935144537	0.160946652677049	0.449414373343521
Merged-chr2-79206419-4	chr2	79206308	79206508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49018.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	6.36128562306791	5.84544697278043	6.6794175982999	6.54089553611923	6.2403396773152	5.76168460891075	6.02096871379485	6.11189338999778	-0.520300991896225	0.0614326768030643	0.262279060830453
Merged-chr13-20211957-4	chr13	20211842	20212042	+	984.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 4 of 21)	intron (NM_080288, intron 4 of 21)	121435.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.44548074305313	5.54373022875464	5.00949806940153	5.53747383626385	6.2131344330061	5.8497139200545	6.23151229543945	5.88377408712514	1.05710410730797	0.000203744023142836	0.00369391131515128
Merged-chr2-150779930-2	chr2	150779830	150780030	+	645.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6866.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	3.00226444179527	2.92357986389763	2.83302485037506	2.27113086436918	3.02984625831468	2.51642080526494	2.48423440385485	2.70487528869129	-0.422430706970041	0.598527684782451	0.825987886019831
Merged-chr12-26315085-1	chr12	26314985	26315185	+	670.0	f0_balb.idr	intron (NM_080563, intron 7 of 8)	intron (NM_080563, intron 7 of 8)	-31625.0	NR_130981	75243.0	Mm.444753	NR_130981	ENSMUSG00000114048	4930549C15Rik	-	RIKEN cDNA 4930549C15 gene	ncRNA	3.55826488492237	3.12854033060623	3.72921598348665	2.86832008691179	2.94097462161702	2.96074782374546	3.0532259525384	3.18935416786399	-1.23663387095712	0.0579214203513638	0.252621861469959
Merged-chr1-191421166-4	chr1	191421064	191421264	+	871.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24123.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	4.44917854347997	4.07046070106843	4.24279183764214	4.31448448489805	4.12031888848388	4.27504648222911	4.39057369917981	4.1470303965347	-0.106999244917519	0.7880678932895	0.917932066973263
Merged-chr6-83656162-4	chr6	83656069	83656269	+	967.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016751)	promoter-TSS (NM_016751)	-53.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	5.35195965171644	5.04322651779719	6.22427250944591	6.39583750076338	5.29811201000125	5.21266416961832	5.41823374702665	5.63550708284597	-0.809664717955613	0.0371584228085426	0.192287798137592
Merged-chr1-55026097-4	chr1	55025961	55026161	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031179, intron 1 of 24)	intron (NM_031179, intron 1 of 24)	1417.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	5.84562932932109	6.25486438443	5.70549363240514	5.5378570938155	5.72404326029661	5.57590646855586	5.5999894121041	5.11228260733803	-0.548611971147771	0.0808594137915258	0.308506229323918
Merged-chr14-14804973-4	chr14	14804862	14805062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15853.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	6.00462651493905	5.87215491231776	6.32525845739699	6.5133067135681	5.74286265250988	5.22020134745843	6.03713000296669	5.93551438041616	-0.697564913631611	0.021755588348506	0.135385646359355
Merged-chr17-69086256-2	chr17	69086156	69086356	+	803.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	10579.0	NM_001355732	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	3.35152004101738	3.70188979805518	3.29135014080798	2.85614814214164	3.75330424598317	3.34243379923379	3.39639014140481	3.46343105454078	0.560231171015674	0.350775017500929	0.65826034723698
Merged-chr11-3290054-4	chr11	3289988	3290188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253691)	promoter-TSS (NM_001253691)	-369.0	NM_001253690	56218.0	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	5.66126255869674	5.67692841542005	6.01868287509737	5.70704567580585	5.61149556568571	5.58415161504343	5.65899713750107	5.57857582538036	-0.26471332369095	0.312697487962418	0.624578922877903
Merged-chr2-164706217-4	chr2	164706128	164706328	+	830.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7727.0	NM_030058	78239.0	Mm.160060	NM_030058	ENSMUSG00000017310	Spint4	9230105I15Rik	serine protease inhibitor, Kunitz type 4	protein-coding	3.80790469520557	3.25084925723611	3.70665871836059	3.96403916914011	3.85987753711636	3.59147030135723	3.74301489315739	3.94483918248928	0.220295696435272	0.673786878891018	0.865875007454402
Merged-chr1-80757589-4	chr1	80757492	80757692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	961.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	6.60005948297076	6.99331143981984	6.25539040975248	5.80250314149391	6.85520630631169	6.6168020878672	6.33663028986216	5.88548789229998	-0.00995877065664964	0.976137040796051	0.991528225629167
Merged-chr5-21186230-4	chr5	21186126	21186326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175437)	promoter-TSS (NM_175437)	-41.0	NR_153365	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	7.73473243534488	7.53748450915619	7.59439804555054	7.76260544675896	7.74974249958211	7.6320142035078	7.72937977776433	7.48822306933883	-0.0100105982373275	0.954049268057547	0.983636154741855
Merged-chr8-40423728-4	chr8	40423628	40423828	+	933.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357249)	promoter-TSS (NM_001357249)	-87.0	NM_178395	70546.0	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik|DHHC-2	zinc finger, DHHC domain containing 2	protein-coding	5.92454904072224	6.0329684587552	6.3116593249394	6.40739719768574	4.75947004066434	4.92278607724091	5.01948426256351	4.91386676401887	-2.28838981502208	3.01301328094738e-14	4.35016779562989e-12
Merged-chr4-134922434-4	chr4	134922371	134922571	+	922.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1154.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	4.11864166530116	4.14793361931414	4.11926109736571	3.89978180090537	4.29654455663136	3.92351544517569	4.00492450952042	4.51560568845747	0.372614787717921	0.385065139559038	0.686491183006874
Merged-chr11-52374463-3	chr11	52374343	52374543	+	787.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011694, intron 2 of 8)	intron (NM_011694, intron 2 of 8)	13581.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	3.09968897583759	2.94218921142484	2.77201976879399	3.05137677853553	3.29940568123022	3.08676752450822	3.0299618341563	3.2093582296363	0.748109020501635	0.203325058286144	0.506136753296126
Merged-chr6-125191724-4	chr6	125191605	125191805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025595)	promoter-TSS (NM_025595)	-119.0	NM_146171	68298.0	Mm.257590	NM_146171	ENSMUSG00000038252	Ncapd2	2810406C15Rik|2810465G24Rik|CAP-D2|CNAP1|mKIAA0159	non-SMC condensin I complex, subunit D2	protein-coding	8.08918386278507	7.9566791432306	7.82526027031844	7.7400079538165	8.06772586633346	8.19022226937807	8.19411859248979	7.87323492231427	0.237117267789587	0.174744707010017	0.469274868847725
Merged-chr1-36875075-4	chr1	36874997	36875197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 3 of 40)	ORR1E|LTR|ERVL-MaLR	64430.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	5.74511855470273	6.03818729736703	6.14584662341958	6.12369955653687	5.8816699517971	5.81542406082948	6.07594080516944	5.81800241609996	-0.203760411476235	0.414885994392184	0.70937233232864
Merged-chr6-71440188-4	chr6	71440133	71440333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024288, exon 1 of 9)	5' UTR (NM_024288, exon 1 of 9)	404.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	5.21169056708281	5.04599892242237	4.86187129381445	4.91024827634365	4.70030767159649	4.66183457370498	4.94352605339415	4.89482828039782	-0.413575247560472	0.211727641451481	0.516468875629711
Merged-chr11-69759103-4	chr11	69758982	69759182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291068)	promoter-TSS (NM_001291068)	-449.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	6.35823275784207	6.86795217747407	6.34039866898717	6.42406230097615	6.48711031042829	6.67788052803548	6.77797078643255	6.48002077848982	0.131140339394799	0.575645203815018	0.813166824687409
Merged-chr1-46970633-3	chr1	46970535	46970735	+	756.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44859.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	4.018435060108	4.02535592399794	4.06114499344493	3.78417666254515	3.33771382850336	3.55058562144178	3.71711206274135	3.67560358611172	-1.23135413768619	0.0123861854826314	0.091827548845768
Merged-chr5-33009936-4	chr5	33009837	33010037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8879.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	7.43428657982889	7.62939120236326	7.39704608985291	7.43333515979677	7.05579605874981	7.31471484041394	7.44509116988692	7.13215354325497	-0.318666216726898	0.0922321701119938	0.332162566488162
Merged-chr14-31413397-4	chr14	31413291	31413491	+	886.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	4286.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	4.50906789172985	4.27511259918577	3.99511535578838	3.99748190686464	4.37859951862622	4.11940685948681	3.75232999681783	4.31725712524231	-0.0862476364850469	0.849529142490252	0.943134322012189
Merged-chr2-128722433-4	chr2	128722316	128722516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	23501.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	6.88449803324322	6.63223218994894	6.41886774400907	6.70710946461694	6.6511522708036	6.76543079931061	6.25224536524102	6.64662180897018	-0.114864642944602	0.614194881444245	0.833704135671077
Merged-chr10-67287995-3	chr10	67287907	67288107	+	800.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2726.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	3.2116723034995	3.10267921832112	3.42464210974067	3.33188559508618	3.18089657900618	3.06530615869135	3.01664472628497	3.32095392441972	-0.466054684492011	0.408558278770203	0.70438176546703
Merged-chr3-127769380-4	chr3	127769295	127769495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	11132.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	7.97519775957891	8.26064319258671	8.1994424405611	8.2100946779146	7.95865581855056	8.04470136713478	8.00600665036918	7.92152182520574	-0.240600509519085	0.131918640352208	0.404316091182819
Merged-chr3-133544774-2	chr3	133544674	133544874	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346736)	promoter-TSS (NM_001346736)	-384.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	4.99977046931344	4.77772010906003	5.79396664640311	5.0610608848937	5.21867611849226	5.17813950029867	5.32518616256063	5.06867823985093	-0.016791822741701	0.962834094900755	0.986716902231301
Merged-chr3-144207092-4	chr3	144206998	144207198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1843.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	5.2385458597958	5.82644488342466	5.36400334661936	5.03628294464051	5.51968042861057	5.56763460063349	5.30745957545071	5.23583569229661	0.0434510706991033	0.893853775829941	0.960450328240811
Merged-chr10-41960037-4	chr10	41959927	41960127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 10 of 17)	intron (NM_001034858, intron 10 of 17)	58355.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	5.56903297356133	5.28589926697482	5.16229686375233	5.54883448029487	5.42110072532295	5.52706742598029	5.13728058448788	5.25774682237742	-0.118979838951436	0.689766369431137	0.873623035418265
Merged-chr3-138118570-4	chr3	138118481	138118681	+	987.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355052, intron 7 of 21)	intron (NM_001355052, intron 7 of 21)	13072.0	NM_008642	17777.0	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	5.52887203534951	5.27071640249346	5.37048871247847	5.46387553971921	5.12069275707716	5.42584246637482	4.95155860734969	5.082475270686	-0.478476171548411	0.109981512582252	0.366215108014911
Merged-chr9-37101843-3	chr9	37101734	37101934	+	832.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 1 of 12)	intron (NM_001029838, intron 1 of 12)	45488.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	2.90908215819724	2.74904184787922	2.79828362876406	2.99670669524385	2.58986642408201	2.49311869791684	2.46332576785386	2.46817863400997	-1.98215941314143	0.00734216206196585	0.06303313875391
Merged-chr14-55764578-5	chr14	55764424	55764624	+	980.7299800000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1438.0	NM_008519	16995.0	Mm.20853	NM_008519	ENSMUSG00000046908	Ltb4r1	BLT1|BLTR|Ltb4r|mBLTR	leukotriene B4 receptor 1	protein-coding	4.09685161161819	4.32092549183187	4.55673934450073	4.3269578748954	4.07389875922002	4.43083008864586	4.60936557015782	4.97578333048652	0.509758640019033	0.232850354537652	0.542464407511367
Merged-chr3-95296274-4	chr3	95296158	95296358	+	885.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_199475)	TTS (NM_199475)	10546.0	NM_001085383	71790.0	Mm.218844	NM_023628	ENSMUSG00000015702	Anxa9	1110003P15Rik|2310069F17Rik	annexin A9	protein-coding	4.31873538827824	4.17799747323546	3.85003953658314	4.07244046656142	4.45571774820617	4.40335085058458	4.4238379611915	4.72485025096835	0.942657595522252	0.0171262905194371	0.115166011609165
Merged-chr13-100600568-4	chr13	100600449	100600649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178410, exon 4 of 6)	exon (NM_178410, exon 4 of 6)	16395.0	NM_178410	218518.0	Mm.25300	NM_178410	ENSMUSG00000021636	Marveld2	BC003296|MARVD2|Mrvldc2|Tric|Trica|Tricb|Tricc	MARVEL (membrane-associating) domain containing 2	protein-coding	6.2134747586525	5.39475761872023	5.57592891060126	5.85867837596513	5.99088728681801	5.69576901938246	5.9157555194682	5.80665997420533	0.103920644930666	0.720845312116347	0.88846247810902
Merged-chr2-129414327-3	chr2	129414223	129414423	+	955.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43184.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	3.93238752573165	4.01552140371682	4.07225491159405	4.32545250101902	3.50438676603034	3.78074970193113	3.58722377953048	4.11282965023575	-0.96985957949253	0.0461487936895248	0.220603327712978
Merged-chr1-87621567-4	chr1	87621400	87621600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	1188.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	5.56132124696139	5.92167679037082	6.32356631046414	5.7431901565999	5.74363836366655	5.91261372829035	6.23977705277976	6.52003645159215	0.347330609077231	0.253404085394649	0.564721751011949
Merged-chr1-155075187-6	chr1	155075097	155075297	+	987.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	8067.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	5.03462065106395	5.05872627072004	4.83564644185403	4.51193636300945	4.62302398499534	5.14326670834397	4.48883976167485	4.5956384523103	-0.277548602602382	0.468574610131494	0.747803507343786
Merged-chr19-10709564-4	chr19	10709480	10709680	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361959, intron 2 of 3)	intron (NM_001361959, intron 2 of 3)	8812.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	4.82925700227222	4.70154465160755	4.72794762797448	4.49652771428742	4.48832978758736	4.38640107710747	4.51449422070008	4.61283265902662	-0.396095648742757	0.272009120585052	0.583612274125799
Merged-chr11-59212504-4	chr11	59212413	59212613	+	854.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001130408, exon 5 of 5)	3' UTR (NM_001130408, exon 5 of 5)	4152.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	3.88055325288986	4.04784427307507	4.02468547037757	3.728752381393	3.92349134340562	3.71759997772294	4.00691215750356	3.97619156568755	-0.0093239325042851	0.983262444363405	0.993973908402019
Merged-chr14-63111829-4	chr14	63111732	63111932	+	986.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER2|DNA|TcMar-Tigger	-10630.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	5.48678992994336	5.45231902220413	4.86280900109728	5.28636150758922	5.57460809903785	5.43484955335073	5.13841312775868	5.12609691227236	0.0820376716603348	0.798946982864936	0.922381350542369
Merged-chr1-7204957-3	chr1	7204874	7205074	+	848.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	116054.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	3.17918788961066	2.9661908979062	3.06434543498814	3.11913078273656	3.12874096228066	3.04467511526992	3.16725984748406	3.06284618277274	0.0711831885086535	0.898764816271853	0.962303043708153
Merged-chr5-17885474-4	chr5	17885390	17885590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	3469.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	6.03361832611523	5.9101317079551	5.63095188423063	6.33830884875314	5.57220377681516	5.83593423141039	5.6833060231185	5.96792213071272	-0.411471395793592	0.146573534862603	0.426967777286073
Merged-chr13-54824291-5	chr13	54824183	54824383	+	837.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34878.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	3.20511814856371	3.13833312096391	3.40641518370552	3.17580248808248	2.99102778623657	2.85415800177901	3.07919875845782	3.1474679935633	-0.863597814202265	0.140913108652942	0.417501421945046
Merged-chr11-101982038-4	chr11	101981941	101982141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028207, intron 1 of 2)	intron (NM_028207, intron 1 of 2)	2750.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	7.22017560809115	7.53810916773367	6.67343272390763	6.82064457081366	7.76078047763835	7.92988069203038	7.6537446958451	7.68620726404787	0.873971120035795	0.000172771622086654	0.0032218263789641
Merged-chr11-87736848-4	chr11	87736742	87736942	+	762.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009296)	promoter-TSS (NM_009296)	-709.0	NM_001355753	20922.0	Mm.622	NM_009296	ENSMUSG00000020485	Supt4a	AL022777|Supt4h|Supt4h1|Supt4h1a	suppressor of Ty 4A	protein-coding	4.27395284776323	3.58147136033031	3.29908462100663	3.35745612228423	3.67907255080559	4.00115268709476	3.4866241367093	3.82677110199831	0.211756800973491	0.711716907201221	0.884600435455677
Merged-chr2-137117530-4	chr2	137117430	137117630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-8595	-1010.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	5.1535995855102	5.3311002514709	4.95188191273162	5.38497484255327	4.93227490058571	5.12711820133674	5.03265059221101	4.70844864590988	-0.523930009394206	0.105381606101729	0.357273509917361
Merged-chr14-61802066-4	chr14	61801948	61802148	+	950.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-119675.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	4.69881113154679	4.66938586819253	4.57266863266852	4.95605321948363	4.84713289620306	4.70604432608602	4.8631459080286	5.21689951702663	0.348252866757842	0.322931866302827	0.634428177846842
Merged-chr3-135211065-4	chr3	135210973	135211173	+	877.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-1490.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	4.36906002866047	4.22386121887222	4.49003667461432	4.30849243883177	4.29703294470977	4.58096824690617	4.17148710392107	4.08648149221415	-0.123501611302103	0.755223302517922	0.903634896880696
Merged-chr5-113993281-4	chr5	113993178	113993378	+	920.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198109, intron 1 of 14)	CpG	479.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	4.19344090287621	4.26489629428567	4.37545136556471	4.03683983582552	4.25624813738773	4.62740507430219	4.31287874724421	4.5312334373705	0.536130498803348	0.171192229630991	0.464294934178781
Merged-chr17-70834621-4	chr17	70834511	70834711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	12166.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	6.99961253560461	6.82525757336551	6.48673656214474	6.54090135702027	6.81484211114643	7.02354595529108	6.97738589557878	6.99588896478149	0.323772043187707	0.133272766754269	0.406571115249216
Merged-chr2-94158151-4	chr2	94158027	94158227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019657)	promoter-TSS (NM_019657)	-218.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	9.43971370821504	9.66212414380974	9.77708616275731	9.68925276226943	9.75411947594411	9.70561479658513	9.9045694614821	9.51183344261444	0.09582913213503	0.53420987545386	0.789066961676578
Merged-chr13-45392227-4	chr13	45392131	45392331	+	984.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153789, intron 2 of 6)	intron (NM_153789, intron 2 of 6)	2489.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	5.03584484543349	5.03671278456492	4.9314772557009	5.30939687752006	4.91457154064216	4.9127477023985	4.90802977458412	5.24900685623887	-0.196695161699868	0.544552918676798	0.79532034222127
Merged-chr15-73595293-4	chr15	73595205	73595405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	1221.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	5.61562587105754	5.63915172035652	5.06446778083235	5.69163786631424	5.71335335597704	5.86770564367467	6.00775782910836	5.53089077901774	0.417339760550169	0.157922969557979	0.444757336539952
Merged-chr4-44016320-4	chr4	44016221	44016421	+	932.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080384, intron 2 of 5)	intron (NM_001080384, intron 2 of 5)	3671.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	4.06511081843564	4.4333941705383	3.95728100760054	4.4250012824408	4.38034693977268	4.29139227487997	4.24013918878243	4.42383563827558	0.200505237497091	0.625765457912468	0.840098340545957
Merged-chr14-41021004-4	chr14	41020918	41021118	+	922.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-7185.0	NM_001316737	70564.0	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	3.93767486091262	4.04043184520125	3.93819942190105	4.12313832562688	4.57959458565844	4.56891956033212	4.80202005887895	4.85311220662192	1.5791364381596	6.2378667445959e-05	0.00136407102001103
Merged-chr6-72348647-4	chr6	72348493	72348693	+	846.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026696, exon 3 of 4)	exon (NM_026696, exon 3 of 4)	1276.0	NM_026696	68364.0	Mm.52711	NM_026696	ENSMUSG00000058706	0610030E20Rik	1500031N04Rik|2810411C16Rik|AI461894	RIKEN cDNA 0610030E20 gene	protein-coding	3.47428740779117	3.61482014983672	3.41000732387761	3.82208564401595	4.16580084728747	3.71296605457603	4.01312118941901	3.64998331741394	0.886067887320941	0.0828639073293523	0.312701201346409
Merged-chr12-9052252-4	chr12	9052152	9052352	+	920.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22255.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	4.29757178586239	4.61880206096693	4.29820800781648	4.76333143205136	4.25141376479719	4.60810496006978	4.49796391795027	4.63180451360996	-0.0702095105241033	0.85853059031266	0.946576014812915
Merged-chr2-75650681-3	chr2	75650626	75650826	+	733.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8533.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	2.04548133278461	2.01158367863268	2.04560837131713	2.24489077211675	2.41224146568757	2.44529765991181	2.45625762227384	2.57955568750835	2.35319195794241	1	1
Merged-chr5-120588781-4	chr5	120588696	120588896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145853)	promoter-TSS (NM_145853)	-183.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	8.69721187141252	8.89777334133976	8.4231077487293	8.48104791286595	8.85233148102479	9.01606936110965	8.88405503172395	8.65788104503127	0.276275004662473	0.112520976834573	0.370913287181404
Merged-chr4-141823148-4	chr4	141823030	141823230	+	814.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007919, intron 2 of 7)	MTD|LTR|ERVL-MaLR	2875.0	NM_007919	13706.0	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	4.5429537146208	4.77933695099051	4.64175674193714	4.12942617197974	5.42782232648545	5.38947874402854	6.04009604432542	5.53331235139362	2.09596048709198	2.62516814282774e-09	1.5623481876115e-07
Merged-chr7-12818804-4	chr7	12818686	12818886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026046)	promoter-TSS (NM_026046)	74.0	NM_026046	67230.0	Mm.333574	NM_026046	ENSMUSG00000057894	Zfp329	2810439M05Rik|4632409L22Rik|ZNF329	zinc finger protein 329	protein-coding	6.83266656498902	6.57305078056335	6.92239195717753	6.9359872695545	6.52883496358854	6.19447159169362	6.38512305408725	6.56771050602528	-0.568407998534216	0.0101056413588475	0.0795256435910894
Merged-chr10-80105655-4	chr10	80105547	80105747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-2945.0	NM_001359637	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	6.95185162380898	6.96938694776167	6.35970189000772	6.08327256944751	7.02421972644273	7.12889745433834	6.67887725162861	6.18971581724142	0.235098851652696	0.442295477147298	0.729012256605129
Merged-chr8-124949551-4	chr8	124949486	124949686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053207)	promoter-TSS (NM_053207)	-332.0	NM_053207	112405.0	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	5.17906029074642	4.91415080082336	5.01719951700624	4.74029184153387	5.22631882118947	5.22532999035762	5.32392293544561	4.90530057148892	0.435209429871149	0.175131308129489	0.469870764468484
Merged-chr7-125561497-4	chr7	125561388	125561588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	9206.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	6.7195128698706	6.68396773977486	6.46822245991107	6.37211804013984	6.75141088394306	6.69602717343705	6.51924424642934	6.64237413452081	0.145814147659769	0.498349817455054	0.76759838054097
Merged-chr5-93150769-2	chr5	93150671	93150871	+	786.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001009818, intron 3 of 9)	intron (NM_001009818, intron 3 of 9)	55724.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	2.63977894556397	2.70617773798479	2.79039692678128	2.49149626371365	2.8681234649664	3.16534176175224	3.3456576372425	3.3130898756573	2.40933443647689	0.000175172774511593	0.00325711943503774
Merged-chr6-89595521-4	chr6	89595345	89595545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 1 of 6)	CpG	207.0	NM_025351	66098.0	Mm.20313	NM_025351	ENSMUSG00000030086	Chchd6	0710001P09Rik|1700021B03Rik	coiled-coil-helix-coiled-coil-helix domain containing 6	protein-coding	5.70635449455586	5.68472280475756	6.42862467476155	5.83913651222108	5.64754489175084	5.74740881580635	5.65200790542649	6.17962687100837	-0.198271658361705	0.512960568874952	0.776079955542303
Merged-chr15-64181436-4	chr15	64181332	64181532	+	907.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	-120984.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.77525534239705	3.64416322092697	4.03438198412944	4.29018560337898	3.94900184441613	4.05916495454324	4.14875973384984	4.07790600820782	0.209136801406868	0.654741710973009	0.855713345917296
Merged-chr12-102366251-4	chr12	102366130	102366330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	73583.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.9039214994323	5.55981233897488	6.3439069964398	6.40272140541176	5.66044981392797	5.12937800996735	5.5254087620631	5.52034516242523	-1.02103161448953	0.00133842779824538	0.0170380752059593
Merged-chr2-79646471-4	chr2	79646396	79646596	+	783.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080558, intron 8 of 17)	intron (NM_080558, intron 8 of 17)	11071.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	3.9524198210862	4.00804273708942	3.95298227479599	4.39649595607722	3.85725868325378	3.96879262162788	3.98543877523796	4.04736868013126	-0.400757639452152	0.366875251191359	0.671230012135118
Merged-chr10-119001154-4	chr10	119001056	119001256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49343.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	6.93833922364157	7.4207992131588	6.99059547053176	6.8003870925663	7.03482421367934	6.95007432738856	6.90441606002882	6.67535243078654	-0.212241945150247	0.346948805733144	0.655034854334884
Merged-chr19-41385172-4	chr19	41385053	41385253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031376)	promoter-TSS (NM_031376)	-83.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	6.79909663844721	6.85346489956228	6.53240196980129	6.42693266600449	6.52239319341305	6.96218746774372	6.41359557197841	6.25082167740141	-0.139590985851749	0.574561363717394	0.81246206040379
Merged-chr3-51701573-4	chr3	51701464	51701664	+	844.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	40385.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	4.51322376275517	4.60374172143302	4.18424762477814	4.46714889672325	3.82140555145128	4.21238520003039	3.96530777524844	4.08421930686904	-1.10841485930345	0.00818148175862397	0.0681763073411717
Merged-chr4-12245146-4	chr4	12245057	12245257	+	956.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73142.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	5.07455078243309	5.1170396850602	5.36901607678861	5.65879720729265	4.65453379705681	4.73789448900226	4.91213271012284	4.85670306143932	-1.08049605942072	0.00147063537405432	0.0183710697244318
Merged-chr5-121453205-2	chr5	121453106	121453306	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026129)	promoter-TSS (NM_026129)	497.0	NM_029912	77462.0	Mm.358781	NM_029912	ENSMUSG00000029452	Tmem116	4930406A18Rik|4930513P12Rik|C030022K24Rik	transmembrane protein 116	protein-coding	3.10059112180937	2.93807375437026	3.32024064934461	2.77802102254204	3.04418567682078	2.94766342555099	2.89935691221187	3.46039883328635	0.25210660376589	0.68981159214789	0.873623035418265
Merged-chr6-4902950-4	chr6	4902874	4903074	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181595)	promoter-TSS (NM_181595)	-346.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	4.80798023759105	4.70217834967537	5.15024563880541	4.56833106326667	5.11579283067664	5.13014590762935	4.93249008819798	5.17619157487244	0.566717900838813	0.0907409907509695	0.329096758415534
Merged-chr15-102399751-4	chr15	102399621	102399821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6595.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	6.39673375731301	6.15916478856032	6.22860863943974	6.06037174326992	6.31988839399859	6.67468365108188	6.72731561008716	6.60330023037602	0.560275787635923	0.0147515104848624	0.103587626037489
Merged-chr2-118959880-4	chr2	118959780	118959980	+	906.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33383.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	4.73976299852317	4.37138355963022	4.46077443082941	4.20822452619052	6.769581186516	6.78278514586266	6.20787610893523	6.68633439582734	3.80320462101016	1.30328481740664e-35	2.57684750050519e-32
Merged-chr4-3938684-4	chr4	3938569	3938769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019969)	promoter-TSS (NM_019969)	-219.0	NR_104355	66433.0	Mm.27406	NM_181391	ENSMUSG00000042198	Chchd7	1810049H20Rik	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding	9.29481521337531	9.40512153794078	9.54681130791264	9.35277994185732	9.48610764405445	9.47985723828289	9.64291037249766	9.30232786337053	0.100185567456957	0.497284984890349	0.766982020988234
Merged-chr1-43507969-4	chr1	43507871	43508071	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	URR1B|DNA|hAT-Charlie	62220.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	5.44604563122436	5.05850229526809	5.02479668206576	5.67845037845497	5.50448622633883	5.31277702620042	5.44680988313567	5.57418190074056	0.195823456073591	0.53965521664663	0.792391982250617
Merged-chr19-12596307-3	chr19	12596205	12596405	+	828.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015503, exon 1 of 2)	non-coding (NR_015503, exon 1 of 2)	261.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	2.73126973527443	2.83296930848281	2.73152556653781	2.97053611558064	2.97123848474627	3.03626376264668	2.97654953609481	3.09726546692927	0.803747558312474	0.18979617380884	0.48889016232546
Merged-chr17-26547969-3	chr17	26547860	26548060	+	748.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13552.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	3.44881601146696	3.22695378400222	3.60434394354583	3.66569989344691	3.62212227335136	3.25065991501968	3.32267703174782	3.44741914489654	-0.260606301386607	0.629509698725625	0.842300709543606
Merged-chr5-64961155-8	chr5	64961051	64961251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1055.0	NM_011604	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	6.64577810858801	6.46480932108705	7.04768905035107	6.56253357406566	7.00432005503946	7.30403995741844	6.93926670438549	7.30797177552502	0.635205554313884	0.00471702392458804	0.0455073252816823
Merged-chr7-121074587-4	chr7	121074479	121074679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030691)	promoter-TSS (NM_030691)	-49.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	7.57536424308957	7.56127133971508	7.55036789007556	7.18895994912606	7.58764474777212	7.52637251474257	7.51318818499644	7.33351826647849	0.0393375424208193	0.836149579161947	0.937648342552355
Merged-chr8-3392997-4	chr8	3392916	3393116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133962)	promoter-TSS (NM_133962)	8.0	NM_133962	102098.0	Mm.170461	NM_133962	ENSMUSG00000004568	Arhgef18	AI467246|D030053O22Rik	rho/rac guanine nucleotide exchange factor (GEF) 18	protein-coding	6.45803621095717	6.37853629960748	5.89552208870665	6.3414642875532	6.35838943795333	6.32409526240349	6.28977306670492	6.20408799921694	0.00908210454065938	0.969362897014733	0.988962967136451
Merged-chr15-66820439-4	chr15	66820339	66820539	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	11390.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	5.20182796684279	5.23704646280332	5.56855875575782	5.19353603295969	5.42365803518638	5.24232107463617	5.32952964099401	5.26271822486452	0.0422755272400448	0.885072531224608	0.956901660186469
Merged-chr6-136513791-1	chr6	136513691	136513891	+	652.0	f0_c57.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-5060.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	2.42572237483344	2.37166408672502	2.42592161762802	2.20624313962176	3.03365805316018	3.29148927009515	2.86708792328876	3.527982931248	4.94067941640666	2.9530055980378e-08	1.42599718767119e-06
Merged-chr18-80470045-4	chr18	80469950	80470150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026295)	promoter-TSS (NM_026295)	-383.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	8.42882835198976	8.6105323920963	8.26003166527314	8.34177603583414	8.44641190713176	8.60801148748516	8.53129783742269	8.16949476012392	0.0404429057521594	0.814590385751164	0.92840582625946
Merged-chr10-53881419-4	chr10	53881347	53881547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130538.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	5.3362594556992	5.56578210821183	6.01957143178136	6.03581670102476	5.10650303011047	5.12324392004558	5.18037743883613	5.33346068922683	-1.04779854424451	0.000821751904195443	0.0114869361329001
Merged-chr10-79812420-4	chr10	79812310	79812510	+	843.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023128, intron 6 of 8)	intron (NM_023128, intron 6 of 8)	-8611.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	3.46428136800859	3.73493209179891	3.33140155839366	3.6367268605328	4.08633241834338	3.92078335843904	4.00615957278642	3.58427760430296	1.05319153917694	0.0342658740428493	0.182942186850565
Merged-chr10-99268925-4	chr10	99268839	99269039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5708.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	8.13659714483475	8.30691502788222	8.53684783435737	8.45512771700965	7.94603795827555	8.16176552494773	8.13037161370118	8.15740845822332	-0.349185525700319	0.0383470184023003	0.196378195876035
Merged-chr3-69205808-4	chr3	69205718	69205918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16601.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	7.85841091251266	8.29445498802175	8.10088154947806	7.78127692094729	7.78319727403445	7.88007396845725	7.57836687611111	7.51730248996284	-0.418266898964791	0.0327756894678413	0.17746392823912
Merged-chr9-45281073-4	chr9	45280962	45281162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11913.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	5.56345003568698	5.62805034269516	5.4827214057615	5.62929616908547	5.78407227103644	5.47846728819851	5.30742932579151	5.29802072787771	-0.143167235487398	0.616365972200804	0.834943450262974
Merged-chr7-120851755-4	chr7	120851652	120851852	+	983.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267711, intron 1 of 17)	intron (NM_001267711, intron 1 of 17)	563.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	5.76943845258514	5.22060868570184	6.15622783980757	6.57994421647337	5.13422984556033	5.16392947706348	5.42018541977126	5.74233477548101	-1.07643239017785	0.00394653801390684	0.0396374529831911
Merged-chr10-99263161-4	chr10	99263057	99263257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026268)	promoter-TSS (NM_026268)	-74.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	8.80301037656405	8.65267846168883	8.88778612211625	8.79194313239012	8.53072785156155	8.62607470111128	8.48982594941971	8.2696573448342	-0.376294143226857	0.0162557462643062	0.110947143862983
Merged-chr17-50666573-3	chr17	50666412	50666612	+	805.644409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 4 of 5)	MTC|LTR|ERVL-MaLR	-32169.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	3.669318188343	3.70815085261144	4.03637354442957	3.60339279282118	3.61894072702691	3.55349713845073	3.48728341286155	3.76969860975027	-0.446652737598454	0.360996518016929	0.666270060569595
Merged-chr11-116986219-4	chr11	116986122	116986322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172948, exon 17 of 17)	3' UTR (NM_172948, exon 17 of 17)	67359.0	NM_172948	268510.0	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	5.08087462759179	5.13709161341777	5.56470533200346	5.57651355944763	4.88885157229512	5.22282634963842	5.05708469912164	5.04325310499991	-0.599329330048783	0.0623924808092036	0.264427644182548
Merged-chr1-184558365-4	chr1	184558283	184558483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040472)	promoter-TSS (NR_040472)	-692.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	6.42689763405736	6.82909324752257	6.65670006862081	6.23910258979022	6.16010523643795	6.2397900174457	5.93857057734885	5.78481078444847	-0.759101227285093	0.00352170117200968	0.0362398681108106
Merged-chr14-109289048-4	chr14	109288946	109289146	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-374807.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	5.97819632595223	5.51834949047972	5.79323065529965	5.76396602274995	5.06423384691181	5.12067207480231	5.46468485852434	5.64772004445224	-0.741565921219131	0.0139870906062043	0.0999384784439887
Merged-chr2-26578647-2	chr2	26578555	26578755	+	546.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-2401.0	NM_178444	353156.0	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	3.74652841683342	3.23520786658826	3.3502857118792	3.3142382362068	3.48304562408627	3.27465894844254	3.49937897392739	3.22687581567933	-0.137122346519883	0.80102978999987	0.923337043240231
Merged-chr8-35366744-1	chr8	35366644	35366844	+	857.3333130000001	f0_balb.idr	Intergenic	Intergenic	-8997.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	4.10461085453322	3.67487625764544	3.25381053337275	3.76095912570595	2.96904165436237	2.9242789811794	3.11047376972814	2.97262914507216	-3.0194744959114	1.41676326711886e-05	0.000377409403406637
Merged-chr9-53700638-4	chr9	53700534	53700734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175562, intron 1 of 1)	intron (NM_175562, intron 1 of 1)	5598.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	6.4123831964339	6.62185617648029	5.95259557981197	6.54343779512403	6.43155893332815	6.51784503551836	6.81850173978657	6.24011227282526	0.147632177467475	0.564225582781678	0.806609795481784
Merged-chr15-100757678-4	chr15	100757580	100757780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4067.0	NM_021530	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	5.44388403172971	5.55876307440269	5.23941995692971	5.28185305428346	5.2016659602093	5.50513178396383	5.00852876308595	5.29791540390507	-0.221697141996514	0.459504768320156	0.742013500840902
Merged-chr1-123606270-3	chr1	123606172	123606372	+	885.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199021, intron 5 of 25)	intron (NM_199021, intron 5 of 25)	439287.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	4.29214678980364	4.09428743112147	4.75448775414515	5.34835570106984	3.08625829198382	3.56167974007437	3.70122690494935	3.43043181695927	-3.81352186886918	6.63245625688236e-05	0.00143536516846649
Merged-chr8-82914677-3	chr8	82914579	82914779	+	718.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	ORR1E|LTR|ERVL-MaLR	51323.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	3.43988275359274	3.56309065894886	3.44035968207582	3.68282414209596	3.40821859628315	3.03799497607965	3.2598807556141	3.07600093670482	-1.18612612171067	0.0383370290658541	0.196352247803855
Merged-chr8-126515405-1	chr8	126515305	126515505	+	615.0	f0_balb.idr	Intergenic	Intergenic	-40340.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	3.57583546296105	3.98179684999379	3.51678775298396	3.49332123590779	3.63488931770231	3.63419576057017	3.72465766596399	4.09322285343794	0.385791408087111	0.440246509473861	0.727741310566664
Merged-chr2-117092063-4	chr2	117091959	117092159	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29012.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	3.80408396022616	3.61704155987994	3.99928374694831	3.98251157186871	4.06053058035975	3.86997685936832	3.98166668377976	3.69309317640414	0.136860349289938	0.765157502596354	0.908067190378076
Merged-chr15-62055326-5	chr15	62055291	62055491	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	16134.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	4.33739733494527	3.92013444945332	3.93425550508371	4.40480373767563	3.79727941919141	3.82505155406612	4.06578777909314	4.29629066515638	-0.442216462717327	0.337996090169686	0.647718939249696
Merged-chr7-80201223-3	chr7	80201125	80201325	+	865.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	2784.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	3.64725358480917	3.16214596247216	3.5491536935741	3.72986109912153	3.16772359074366	3.5576494163949	3.31376623738428	3.38342123625376	-0.643276772982521	0.245653153192031	0.556787217903947
Merged-chr18-15063574-3	chr18	15063471	15063671	+	961.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142731)	promoter-TSS (NM_001142731)	11.0	NM_001142731	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	3.95777021395052	3.83688553345132	3.59315812732228	4.2982418723099	3.51569395570645	3.71078902131277	3.69392520186443	3.90975855614449	-0.732591628993156	0.144918107733046	0.424106816476049
Merged-chr2-58801363-4	chr2	58801253	58801453	+	922.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46169.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	5.02890578806318	4.61410622642751	4.96544922983485	5.16847587361038	4.53877748207876	4.76140789177606	4.90807264691063	4.70740406979405	-0.495495093604671	0.159620607692809	0.447290863941044
Merged-chr13-80886128-4	chr13	80886031	80886231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153411)	promoter-TSS (NR_153411)	36.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	8.73003565382656	8.62956734475705	8.72724380911851	8.76571681688911	8.63393523996035	8.63615844734114	8.47975687194564	8.43735107606699	-0.205534837033557	0.163163919188473	0.452710867853602
Merged-chr2-75706594-4	chr2	75706497	75706697	+	936.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1934.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	5.08184930564644	5.01796851525281	4.98269476314328	5.23038081069687	5.44166571975561	4.76035871369358	4.85109731645565	4.62243413852075	-0.206068875651292	0.573425392904334	0.811884034005084
Merged-chr5-135711067-4	chr5	135710973	135711173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	21928.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	7.46487821265359	7.70916874382037	7.5135122302104	7.7019321642545	7.38460439085829	7.6434684482306	7.66529363765791	7.589278027857	-0.0529087957702762	0.767514537372489	0.909027746453384
Merged-chr2-152914635-4	chr2	152914521	152914721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081044, intron 3 of 11)	intron (NM_001081044, intron 3 of 11)	3269.0	NM_001081044	228785.0	Mm.250604	NM_001081044	ENSMUSG00000027470	Mylk2	9830004H17Rik|BB138278	myosin, light polypeptide kinase 2, skeletal muscle	protein-coding	5.70531679626032	5.67502373864614	5.42434264176263	5.60379776404362	5.70053766274882	5.95440897501961	5.626096125557	6.16243421569847	0.435398839117053	0.109652846874106	0.365647920939134
Merged-chr2-3322888-1	chr2	3322788	3322988	+	558.0	f0_balb.idr	intron (NM_008708, intron 11 of 13)	intron (NM_008708, intron 11 of 13)	9740.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	3.38967520141397	3.309558366186	3.15613712975432	3.19772063274146	3.10707548297416	3.33105584509789	3.47775384672516	3.3882229955618	0.237358018096581	0.658485391680017	0.857904281262009
Merged-chr14-57357192-4	chr14	57357086	57357286	+	954.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030004, intron 3 of 7)	intron (NM_030004, intron 3 of 7)	41297.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	4.36749058029996	4.69058772592623	4.23099358480045	4.4039144569752	4.60716196812081	4.14732234061508	4.54669666608328	4.07547919363909	-0.13819670703738	0.738235218986949	0.896701754212797
Merged-chr2-169774621-3	chr2	169774505	169774705	+	984.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	140959.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	2.70130447554571	2.63424204485162	2.78691744034401	2.25492727658489	3.6334370295916	3.46137295409665	3.86540980135145	3.68260903164891	6.96421174081744	1.39576376666301e-13	1.76777703109086e-11
Merged-chr9-35177970-3	chr9	35177866	35178066	+	840.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1979.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	4.25337914055741	4.638333079076	4.83413512767415	5.0769551442073	4.10370162177226	3.91866112570899	4.23554902677066	4.34555826462864	-1.37769169471548	0.00142781329795016	0.0179446491321847
Merged-chr18-66475900-4	chr18	66475816	66476016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17312.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	7.24724342245656	7.81918240087808	7.47286974419165	6.99292408725565	7.55219181842017	7.59279202000351	7.60125631883502	7.12653194413931	0.0925362652786894	0.695313772346329	0.876549520063748
Merged-chr2-117838604-4	chr2	117838509	117838709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040631, intron 2 of 5)	intron (NR_040631, intron 2 of 5)	16681.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	6.55195210705646	6.73133009257354	6.63509795654433	7.19541519571956	6.67816133252072	6.77999874374007	6.76406869970735	6.77978908313674	-0.10997459405137	0.637509210720664	0.846796202621646
Merged-chr11-77348237-4	chr11	77348126	77348326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291190)	promoter-TSS (NM_001291190)	-54.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	6.53503726159823	6.62414114402559	6.22133342492246	6.16538563855462	6.692616010302	6.97633002525824	6.67046707787174	6.56386518809713	0.494437708295779	0.0334076699968131	0.1797237202557
Merged-chr12-32305893-4	chr12	32305791	32305991	+	957.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-72898.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	4.82795293781357	5.62114347844806	4.94718080578792	5.08644088742293	5.1437589740223	5.4503300991047	5.13046365520495	4.94388622927584	0.0280047302598523	0.936163592529054	0.976869657372429
Merged-chr19-5406906-3	chr19	5406809	5407009	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015545)	promoter-TSS (NR_015545)	94.0	NR_027938	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	3.18861662760329	3.01216465439799	3.18898953971573	2.54760837757858	4.33403900931708	4.26898501684624	4.27048701567067	4.75926138866819	5.8555478338227	6.06972734476798e-17	1.33344790948531e-14
Merged-chr14-122019403-4	chr14	122019317	122019517	+	713.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 8 of 8)	intron (NM_026861, intron 8 of 8)	-15257.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	3.20594364564357	3.29086714303111	3.46555928099477	3.30872627759871	3.76911206145928	3.58317880366701	3.76177460300351	4.02684328917794	1.52199221120537	0.00219915668281051	0.0251642843870164
Merged-chr13-74260761-4	chr13	74260646	74260846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317351, intron 2 of 9)	intron (NM_001317351, intron 2 of 9)	31585.0	NM_009644	11624.0	Mm.290446	NM_009644	ENSMUSG00000021575	Ahrr	mKIAA1234	aryl-hydrocarbon receptor repressor	protein-coding	6.68842941573618	6.6323886265044	7.05719815211816	7.28924031591977	7.03982589927547	6.78619081845909	6.88510011055871	7.16491357242488	0.0269641763911028	0.909102266973375	0.966201647731837
Merged-chr18-5820440-3	chr18	5820339	5820539	+	976.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	227792.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	3.88058574598109	3.95134260861914	3.76981881455284	3.53118735839911	4.29688405574835	4.25025137074009	4.18992581413721	4.07642642830216	1.17501279747123	0.00649341393961588	0.0575513274570936
Merged-chr4-8691112-4	chr4	8691026	8691226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277149, intron 1 of 37)	CpG	720.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	5.41352390912051	5.02471654593547	5.32659483630316	5.90505678276268	5.26946248231439	5.37562193748443	5.35895489268302	5.29224190765844	-0.281351220770875	0.395366281405069	0.694224450357239
Merged-chr8-94702987-4	chr8	94702881	94703081	+	792.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6739.0	NM_026385	67801.0	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	3.78003066756445	3.91700103236278	3.72845612950823	3.42721530531569	3.78136425523474	3.84806499420287	3.86194455471899	3.77837669812138	0.311190656123684	0.509179219599673	0.773921693917156
Merged-chr9-95682815-4	chr9	95682725	95682925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 5 of 8)	intron (NM_029620, intron 5 of 8)	45197.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	7.33096237223299	7.49490548977933	7.39549912400146	7.61731232067908	7.73185580751523	7.68124416404338	7.93872532783393	7.76892055344723	0.405756849629423	0.0215700433154417	0.134595784443747
Merged-chr7-118129704-4	chr7	118129604	118129804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019419)	promoter-TSS (NM_019419)	-79.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	8.80788570245655	8.89380905234689	8.92865904873872	8.9158537937727	8.72844936840658	8.94603516054558	8.89240507585618	8.85516949041264	-0.0420178913324942	0.76764866033107	0.909065338836771
Merged-chr17-6215960-4	chr17	6215886	6216086	+	885.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001103181, intron 8 of 13)	intron (NM_001103181, intron 8 of 13)	-40874.0	NM_001357884	77106.0	Mm.381893	NM_001033178	ENSMUSG00000038141	Tmem181a	5930418K15Rik|C76977|Gpr178|Tmem181|mKIAA1423	transmembrane protein 181A	protein-coding	5.01678175260643	4.69544177776215	4.70851097847483	5.68688434306379	4.41477149020999	4.38099926875273	4.1175935466402	4.49525702339134	-1.60228892047566	0.000213108251138514	0.00383847536433941
Merged-chr15-85331825-4	chr15	85331730	85331930	+	750.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4551.0	NM_016843	54138.0	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	3.53842713742496	3.64708740251161	3.64923832151965	3.51352125471458	3.93839978036733	3.71205721832275	3.73495259472815	3.47827930322044	0.466372540763038	0.329083772202304	0.640336735854547
Merged-chr18-36708412-4	chr18	36708224	36708424	+	849.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12399.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	2.83419174202439	2.89270912842845	3.64176283555475	2.61958152385309	3.24626141679687	3.35896435261285	3.4891114126183	3.23931126201583	0.993508660419748	0.147991588079457	0.429496292469532
Merged-chr7-24399663-4	chr7	24399577	24399777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028047)	promoter-TSS (NM_028047)	49.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	8.00534966115579	8.17951497577415	8.06115001960903	8.18881182415832	8.09291209769101	8.4969031791059	8.35361793087514	8.25827922682445	0.239879836289339	0.151670245636076	0.435394344360064
Merged-chr7-101559638-3	chr7	101559468	101559668	+	797.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033804, intron 1 of 3)	B3A|SINE|B2	1297.0	NR_033804	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	3.26887805836514	3.10016327003131	2.80184826810464	3.03205836950097	3.32825693534989	3.38325000938043	3.41299683534053	3.32254379926321	1.13394282978814	0.0441351474221371	0.214296063400695
Merged-chr11-89076422-4	chr11	89076318	89076518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033266, intron 2 of 3)	Lx9|LINE|L1	2577.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	6.34516467119599	6.28256795400302	5.98836826002133	6.58635223880097	6.24305850446722	6.46664014228688	6.64812591903463	6.6633778068233	0.257473076621762	0.300874920868858	0.612761385269876
Merged-chr15-73612236-4	chr15	73612129	73612329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	5095.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	6.45390308903784	6.54417870249085	6.61316743701811	6.62499310957615	6.38289127547166	6.28612247407616	5.96160788159285	6.43347075925283	-0.416968878870119	0.0653589392035405	0.272184877929371
Merged-chr19-5945188-4	chr19	5945071	5945271	+	860.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 13 of 17)	intron (NM_001164057, intron 13 of 17)	19035.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	5.49190678550813	5.5207450649749	5.42023088572702	5.4039834436536	4.44633683559753	4.65130778880073	4.49393481909818	4.46026673180877	-1.92651688160505	7.43010612372734e-09	4.04332969251367e-07
Merged-chr11-89000129-1	chr11	89000029	89000229	+	1000.0	f0_balb.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	726.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	5.41703702920822	5.31116370368939	5.13739339069136	4.59205356169331	5.72498693816844	5.72356654192251	5.59515107825243	5.02509370853992	0.735116212266679	0.038632134736696	0.197282157295068
Merged-chr1-184614925-4	chr1	184614808	184615008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57217.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	7.20504945408477	7.08659460956606	6.82579980478484	6.90464878847326	7.00483217000873	7.05880196493849	6.83329252010703	7.04361814706456	-0.0284770634875183	0.886106123377467	0.957247996194402
Merged-chr5-96860149-3	chr5	96860050	96860250	+	724.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-61122.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	3.58621295752456	3.21397584430981	3.44130987700358	3.59727358225855	2.95094290923985	3.19964491813288	3.26460467777531	3.08739032703192	-1.3338249161873	0.0208305666185969	0.131561570660613
Merged-chr12-38844211-4	chr12	38844094	38844294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347379, intron 7 of 11)	intron (NM_001347379, intron 7 of 11)	60483.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	5.63648041696059	5.22337258999952	5.6374717345697	6.18429794047697	5.27810918870559	5.30243307643718	5.50554451945261	5.32442942904013	-0.659368308318297	0.0440769950397202	0.214095566393629
Merged-chr19-18583084-3	chr19	18582978	18583178	+	934.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 9 of 9)	intron (NM_017375, intron 9 of 9)	48735.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	4.17972257972652	4.09408014844296	4.22628090056493	4.85363807155152	4.41002604713149	4.04590800717676	3.90770898401443	4.0809054694176	-0.639278310130264	0.174524186766746	0.469002042128977
Merged-chr7-140954369-4	chr7	140954263	140954463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030694)	TTS (NM_030694)	1598.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	6.91767195079075	7.06199925606307	6.93196146757935	6.92758872422438	6.87401451054257	6.92739407955583	7.1213080772498	6.7459579646803	-0.052625160559119	0.78860505795182	0.91812687233996
Merged-chr3-61294988-4	chr3	61294869	61295069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69538.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	6.6719597242562	6.47661828829477	6.41685757959253	6.86335441409583	6.38586521120397	6.52058683581735	6.25379320673816	6.44729360148004	-0.337928736258211	0.137577723687089	0.412622999157398
Merged-chr10-78063341-4	chr10	78063233	78063433	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001284199, exon 6 of 6)	exon (NM_001284199, exon 6 of 6)	-6035.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	5.15631730771029	4.70694294984351	4.84813000385881	5.0325096639782	5.34802309696636	5.02416367831778	5.06975664812065	4.99145061226973	0.338938644341514	0.29823288480421	0.610365982560708
Merged-chr16-20412788-4	chr16	20412683	20412883	+	947.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176839, intron 2 of 6)	intron (NM_176839, intron 2 of 6)	13611.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	4.56962735818863	4.97629731682625	4.52499676985618	4.71271932202008	4.91329534985218	5.21857092528747	4.67584054969181	4.91653207284085	0.465229776756287	0.185825834191358	0.483735666883048
Merged-chr16-87405175-3	chr16	87405067	87405267	+	817.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081068, intron 17 of 29)	ORR1B1|LTR|ERVL-MaLR	27439.0	NM_001081068	78913.0	Mm.249005	NM_001081068	ENSMUSG00000052299	Ltn1	4930528H02Rik|AV266914|C87237|Listerin|Rnf160|Zfp294	listerin E3 ubiquitin protein ligase 1	protein-coding	3.70256383567275	3.50530085411355	3.50213110485189	3.15840856630061	3.23928044658675	3.16749991178069	3.8966112494355	3.3867395687525	-0.0702388928859831	0.903746171349525	0.964332809607505
Merged-chr17-43536741-4	chr17	43536636	43536836	+	863.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254953, intron 2 of 2)	intron (NM_001254953, intron 2 of 2)	6903.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	4.66439452895623	4.22058474796131	4.3175105804082	4.45298029221962	4.28317875017878	4.48974788863506	4.10990469147222	4.44238813978553	-0.210877403757409	0.592156187677004	0.821972098807704
Merged-chr6-98062038-4	chr6	98061931	98062131	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70248.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	5.14970322405416	5.56964938658338	5.78749904898311	5.24842832380325	5.57136823799382	5.02393871229232	5.12551198323517	5.24646675669745	-0.32739184433145	0.321701199749511	0.633233286881578
Merged-chr9-32211584-4	chr9	32211467	32211667	+	951.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195632, intron 10 of 21)	MTC|LTR|ERVL-MaLR	-12682.0	NM_177379	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	5.00558759556057	4.62110529874434	5.0382583107333	4.94105349454747	4.93154265697765	4.42464010234823	4.61368020835484	5.23702469647188	-0.131891773053328	0.725207616057911	0.890775427374647
Merged-chr1-84426809-4	chr1	84426698	84426898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 8 of 12)	intron (NM_152915, intron 8 of 12)	-142153.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	5.80764296016225	5.58043656779048	6.03004609333453	6.02835518215917	6.0378327884922	5.74781326296205	5.62601381219448	6.02573177141208	-0.00458947653638721	0.986472403598569	0.995013592786284
Merged-chr1-43561308-4	chr1	43561211	43561411	+	880.2625119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 4 of 4)	intron (NM_010879, intron 4 of 4)	115560.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	4.33699236733286	4.59725497417288	4.78035391824298	5.04861122197188	4.53438629311866	4.46699388095176	4.2706315948684	4.47148872591395	-0.646999096407284	0.100645736811066	0.34827746273108
Merged-chr5-147747648-1	chr5	147747548	147747748	+	564.0	f1_balb.idr	Intergenic	RSINE1|SINE|B4	-21660.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	2.82770570441912	2.61636186334116	2.70857026133548	2.53854060073701	2.34409892090949	2.5357610812923	2.75879080279051	2.82646530033264	-0.227835491814962	0.747425444453494	0.900560236507876
Merged-chr7-99044004-1	chr7	99043904	99044104	+	726.0	f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	L1MC4|LINE|L1	97140.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	2.65257174874654	2.75645842560552	2.78723712056074	2.82741551733827	2.83361587015191	2.95667164354684	2.89809035136366	2.8482042270612	0.545291501517334	0.372256225482484	0.676099595682082
Merged-chr3-88143258-4	chr3	88143167	88143367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	895.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	6.50237751021318	6.525346213455	6.99578727857418	6.47179119824794	6.69019493477371	6.59197312041385	6.77335945822345	6.74791221606148	0.102816532033807	0.645688835762905	0.850934142345746
Merged-chr15-59064124-4	chr15	59064030	59064230	+	854.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 1 of 14)	intron (NM_144800, intron 1 of 14)	17896.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	4.1012327031872	4.11325299487089	3.9643838476344	4.11998371524415	4.00226379275409	3.814862186508	3.89895472271686	3.69465549433539	-0.591485514814666	0.17571427693507	0.470550643100841
Merged-chr17-8232260-3	chr17	8232168	8232368	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3775.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	4.03603961632785	3.78544733782342	3.61325388197708	3.86440579678831	3.24194922716019	3.41566538855971	3.80228850039041	3.66577585573448	-0.905515350862572	0.0820739487023017	0.311039377844805
Merged-chr6-137696677-4	chr6	137696575	137696775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38407.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	5.95654745409665	5.52729138163215	6.30430657791948	5.85251883788608	5.69491157166279	5.65539686202747	5.59345753377426	5.67155086697445	-0.450826520774208	0.110187656150053	0.366573710612399
Merged-chr10-17576059-4	chr10	17575960	17576160	+	911.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147168.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	4.36827738020849	4.1506182874069	4.81217548373264	4.98876564222996	4.832253349882	4.7222721767133	4.52748279458436	4.5453731375286	0.0581432994740727	0.888386596389208	0.958170612082543
Merged-chr1-16621357-2	chr1	16621261	16621461	+	639.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-2023.0	NM_001271017	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	4.08490426159437	4.03531635725554	3.94249379101667	3.95306436740971	4.35251146846682	3.71677763075685	3.87541976626006	4.08301141322469	0.111156408608662	0.805160427219058	0.925171083261684
Merged-chr3-121693213-3	chr3	121693108	121693308	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22445.0	NM_001033814	619318.0	Mm.371258	NM_001033814	ENSMUSG00000074248	4930432M17Rik	-	RIKEN cDNA 4930432M17 gene	protein-coding	5.18059410373304	5.22377054970392	5.53078615011636	5.35447670280514	5.11023866711073	5.45274403747109	5.28261801695013	5.5268734491195	0.0234973093383322	0.93695447647158	0.977204440107264
Merged-chr17-63931780-4	chr17	63931673	63931873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 7 of 18)	Lx10|LINE|L1	-6199.0	NM_008000	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	5.49649725759691	5.49231626343439	6.13179561906936	6.33666094276992	6.30672830838295	6.13764917738749	6.2847885288754	6.37984093366977	0.525024359598328	0.0806540287685584	0.308052860791866
Merged-chr4-121215110-4	chr4	121215019	121215219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346660)	promoter-TSS (NM_001346660)	-35.0	NM_001346660	109263.0	Mm.215745	NM_001081013	ENSMUSG00000049878	Rlf	9230110M18Rik|AI195322|MommeD8	rearranged L-myc fusion sequence	protein-coding	7.28057692886852	7.32981134458319	6.82508722442188	6.78602093086743	7.76065611685522	7.50092366200321	7.31752149914061	7.64288712698925	0.670601293672348	0.0022641964978552	0.0257449269202612
Merged-chr16-57385383-3	chr16	57385310	57385510	+	632.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	32133.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	3.76426512605679	3.32334104158165	3.94362219995144	3.48478453336122	3.33985531574336	3.67547309271303	3.88295500788394	3.37421837885329	-0.187101426435125	0.731090974875454	0.893423144948322
Merged-chr6-146502244-4	chr6	146502149	146502349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010586)	promoter-TSS (NM_010586)	-26.0	NM_019923	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	7.32081835782203	6.8936711777415	7.33193994759744	7.37947779554969	6.78430008152398	6.99467366148804	7.01073925712451	7.20309435019186	-0.340466844766353	0.107585765611306	0.361714005500314
Merged-chr11-118220857-4	chr11	118220759	118220959	+	959.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-8117.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	4.76255032144138	5.09242282213447	4.55531032569822	4.84870228477966	4.86799164882524	4.77482612614433	4.85158344128332	5.1266009793792	0.15572535392553	0.649199067790234	0.852618049822703
Merged-chr11-83602165-4	chr11	83602096	83602296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 2 of 8)	L2a|LINE|L2	-9109.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	5.31431546569602	5.22208063526699	5.31523030368558	5.18302774275857	5.02990654259622	5.23521453291188	5.10340213273551	5.36809378971887	-0.129644503883398	0.661131767911514	0.859233242450522
Merged-chr4-152086811-6	chr4	152086709	152086909	+	972.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104381)	promoter-TSS (NR_104381)	-54.0	NR_104381	269608.0	Mm.332102	NM_001004156	ENSMUSG00000039713	Plekhg5	BC023181|Syx	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding	4.73896066594174	4.59796267167795	4.73973731602232	4.59792582795	4.90932572428261	4.79722928213138	4.43210900826512	4.62108486776636	0.10237772581705	0.771762803161607	0.910501791163046
Merged-chr11-63151933-5	chr11	63151840	63152040	+	992.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302255, intron 4 of 4)	intron (NM_001302255, intron 4 of 4)	19137.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	4.50970806585517	4.84867545161285	4.63294082411931	4.66663266757938	4.83266687055504	4.68376024725824	4.40328423258011	4.41960186441831	-0.140385096389972	0.702072801177392	0.880010098877197
Merged-chr2-72235401-2	chr2	72235301	72235501	+	638.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 21 of 26)	intron (NM_001355478, intron 21 of 26)	-50236.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	2.89206569947021	2.99090322804156	2.89235447248538	2.98134687060963	3.0950369351798	3.32951113925238	3.66822456354861	3.21285151152203	1.5215623062422	0.00981814329737917	0.0778571325494822
Merged-chr19-10020152-1	chr19	10020052	10020252	+	567.0	f0_balb.idr	intron (NR_153790, intron 1 of 10)	ID_B1|SINE|B4	1958.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	3.47730002774761	3.79664402961339	3.5846137573253	3.24940908089445	3.67559927512471	3.47572715141451	3.22357153676489	3.41905655768884	-0.235597347287942	0.665703820537618	0.861582866462235
Merged-chr14-47299044-4	chr14	47298938	47299138	+	921.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178684, intron 1 of 3)	intron (NM_178684, intron 1 of 3)	764.0	NM_001360542	218975.0	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	4.84615311652031	4.4004203490659	4.38483899401288	4.61179261138115	4.89528033361547	4.31291622585153	4.72343382956074	4.33501956920228	0.0647884925874078	0.870385734134192	0.951344955435208
Merged-chr6-31398968-5	chr6	31398952	31399152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040300)	promoter-TSS (NR_040300)	224.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	5.74373942411225	6.02319928730902	6.21615540163708	5.90904824836557	6.09828317449323	6.35282580923039	6.02557680357306	6.35312976299567	0.35776462752337	0.148002712340616	0.429496292469532
Merged-chr11-100548284-4	chr11	100548190	100548390	+	917.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 1 of 11)	intron (NM_028918, intron 1 of 11)	2658.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	4.73849560841262	4.49673247622243	4.73928048776325	4.7566911504911	4.23132204830236	4.4963841048393	4.78582436549092	4.66218636024832	-0.302732066132491	0.416184115382005	0.710097010427652
Merged-chr14-121379284-7	chr14	121379153	121379353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145465)	promoter-TSS (NM_145465)	-23.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	6.48729594350602	6.61007918383881	6.50624348225165	6.62379786991073	6.86191186467934	6.95247848378991	7.32174260541784	6.89329766476634	0.640024470794103	0.00256999067411579	0.0283172393487442
Merged-chr2-4917914-2	chr2	4917814	4918014	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1082.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	4.68568893644303	5.0443842615457	4.92163499947134	4.65180413808718	4.90930982436663	5.13048085815474	4.93297196133256	5.31434573938767	0.49294799277477	0.139936331209398	0.415958856554476
Merged-chr12-84193145-4	chr12	84193055	84193255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	CpG	860.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	5.50993609243911	6.04085333924555	5.69823602462945	5.15109869237866	5.87634703123204	5.56849817703852	5.53922721972595	5.83512603160984	0.14850561718291	0.638695270866225	0.84731839493744
Merged-chr2-84798290-4	chr2	84798205	84798405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019949)	promoter-TSS (NM_019949)	-523.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	5.94289273821951	6.6450326151359	5.42425657121302	5.7393688589768	6.29461270104641	6.82804942412418	6.29829887736772	6.05341340820147	0.570087391115337	0.0914620731726982	0.330476594322057
Merged-chr5-24425245-4	chr5	24425143	24425343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009207)	promoter-TSS (NM_009207)	11.0	NM_009207	20535.0	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding	6.94692195289518	6.99099242704635	6.41599230425447	6.75672752167815	7.29682903807174	7.5263889088912	7.25497556098486	7.1265172418856	0.701280761558038	0.00108446603748748	0.014350475568381
Merged-chr13-5861269-4	chr13	5861196	5861396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011803)	promoter-TSS (NM_011803)	-193.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	9.33197402604398	9.51434804006893	9.19594202181486	9.27059370896468	9.37239143784486	9.52850095233428	9.34284557455472	9.09522559410301	0.0125535199999545	0.937054364653967	0.977210490892393
Merged-chr1-24378695-1	chr1	24378595	24378795	+	794.0	f0_balb.idr	intron (NM_007733, intron 15 of 50)	intron (NM_007733, intron 15 of 50)	183492.0	NM_001290691	12839.0	Mm.154662	NM_007740	ENSMUSG00000026147	Col9a1	Col9a-1	collagen, type IX, alpha 1	protein-coding	2.99577013063386	2.97725387414032	3.41951801782145	3.55361989288767	3.00913742470341	3.24327689247994	3.59370584064228	3.31000962489548	0.129771193394379	0.835770115453734	0.937518218676227
Merged-chr5-112991405-4	chr5	112991299	112991499	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	24139.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	5.70734407169954	5.39396599508367	5.56374926769366	6.06479179790014	5.38290905757639	4.91864156377961	5.04627621345039	5.14014351611953	-1.0178275189521	0.00174318657503954	0.021026652639339
Merged-chr5-53326325-2	chr5	53326225	53326425	+	718.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59219.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	2.96735021473889	3.27240391390191	3.09380047821097	3.10967632605411	3.15628166358744	3.20292704837132	3.08298705542567	3.1511329486374	0.124970512129844	0.822367852332231	0.932143478460956
Merged-chr17-44130627-2	chr17	44130527	44130727	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24818.0	NM_001357996	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	2.59376779613604	2.70181070271712	2.51938191889371	2.54082070654894	2.8795657256628	3.0826785346786	2.84600148414778	2.85559313287988	1.56677521425658	0.0135367671706209	0.0977115455265823
Merged-chr16-91545167-4	chr16	91545047	91545247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-1947.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	5.71749148493387	5.88932290400411	5.63565833032262	5.80617575655753	5.96482201185789	6.04574929904736	6.22321429109851	6.35140436196461	0.596399031314321	0.0164198246918849	0.111927475746378
Merged-chr11-114636443-4	chr11	114636344	114636544	+	666.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32099.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	3.44255237750755	3.51215312999632	3.74768697363855	3.42252491340496	3.54042831101956	3.55735691319337	3.3123477974543	3.60302541499218	-0.0733593338282746	0.884116310138237	0.956390337098447
Merged-chr5-120600493-3	chr5	120600391	120600591	+	802.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029408, exon 2 of 5)	exon (NM_029408, exon 2 of 5)	11468.0	NM_029408	75732.0	Mm.425285	NM_029408	ENSMUSG00000029601	Iqcd	4933433C09Rik|AI662646	IQ motif containing D	protein-coding	3.29475964588488	3.3375315244816	3.16630277497696	3.22789496887178	3.40410375162479	3.78607188142392	3.50560640158919	3.46571305647114	0.983919431584896	0.0554024857960859	0.246176012015706
Merged-chr19-47919831-1	chr19	47919731	47919931	+	1000.0	f0_balb.idr	promoter-TSS (NM_001001738)	promoter-TSS (NM_001001738)	-532.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	4.65144531662144	4.84668520459285	3.98792573779198	4.43616180206146	4.53446542066875	4.5824540892046	4.66629224265024	4.4913514799478	0.11366300299452	0.778492068715783	0.913745806756274
Merged-chr10-76468847-4	chr10	76468730	76468930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019434)	promoter-TSS (NM_019434)	-141.0	NM_019434	54387.0	Mm.30098	NM_019434	ENSMUSG00000001150	Mcm3ap	GANP|mKIAA0572	minichromosome maintenance complex component 3 associated protein	protein-coding	6.35276806762151	6.74662232872697	6.78107430640502	6.71052589214028	6.07442733973168	6.3507257779542	6.59031329345336	6.67876053439823	-0.330229396057001	0.174192405954966	0.468536831756677
Merged-chr15-34027331-4	chr15	34027127	34027327	+	875.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-55492.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	4.2181497828644	3.59984043971671	4.1065923790202	3.74705070448154	3.33591269053707	3.63861329939107	3.37886508980521	3.69075387463093	-1.30498890580366	0.0136216156378294	0.0981396038002393
Merged-chr1-52500571-4	chr1	52500483	52500683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008667)	promoter-TSS (NM_008667)	-135.0	NM_008667	17936.0	Mm.25903	NM_008667	ENSMUSG00000002881	Nab1	-	Ngfi-A binding protein 1	protein-coding	7.93973287429279	8.03731637223788	8.22713184428851	7.83027080405437	8.12470438871375	8.09699698028166	8.08800658266797	7.98474305649931	0.0856410266098794	0.611577702524733	0.832381272376602
Merged-chr17-80450686-4	chr17	80450606	80450806	+	856.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009231, intron 5 of 21)	intron (NM_009231, intron 5 of 21)	29747.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	4.08522637802375	3.48420202586127	4.08585288652762	4.10960989680839	3.92726454401457	4.06456898241465	4.11188534215959	4.17098697147905	0.260400205758665	0.575435188450083	0.813031507377992
Merged-chr13-111778722-4	chr13	111778611	111778811	+	955.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	30282.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	3.73187496868098	3.49247936656004	4.46712420646187	3.90560313731432	4.18564920383448	4.01985648734415	4.02421190687008	3.67097826869867	0.114512581267923	0.826287239562398	0.93341395042234
Merged-chr10-8837855-4	chr10	8837743	8837943	+	932.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	48227.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.53591098519963	4.73135617529524	4.76557332588972	4.72462893120824	4.51062879432965	4.22053652950358	4.4304190232237	4.86274977460694	-0.362804679948441	0.332470127246905	0.64346986397225
Merged-chr6-15729421-1	chr6	15729321	15729521	+	955.6666869999999	f0_balb.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	8760.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	4.29794703320738	4.31859021321598	4.48875011274859	4.37196447044164	3.97484756905304	4.14953316159242	3.66643485048048	3.80229723080072	-1.20855368528851	0.00556137930904986	0.0513628412921837
Merged-chr7-25279441-4	chr7	25279353	25279553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 2 of 20)	intron (NM_001302811, intron 2 of 20)	-2726.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	6.54904571324566	6.43453192921974	6.53313235980002	6.8350651143926	6.94027677759316	6.99949027318639	6.85493828496411	6.89787133469491	0.437582021892966	0.0380687936446666	0.195363998762345
Merged-chr9-116174829-1	chr9	116174729	116174929	+	1000.0	f0_balb.idr	intron (NM_009371, intron 1 of 7)	CpG	534.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.96097081042399	6.35818901386613	5.81695738364711	5.72484632119662	5.88773379630419	6.43955280366988	6.14040454984825	6.26079839768281	0.320092762051799	0.245600476864266	0.55670327822182
Merged-chr16-15592327-3	chr16	15592229	15592429	+	846.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159351, intron 1 of 2)	B1F|SINE|Alu	2189.0	NM_001159351	70620.0	Mm.235407	NM_023585	ENSMUSG00000022674	Ube2v2	1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MMS2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding	3.23943432363329	3.41544987118412	3.55948203744803	3.44806752462267	3.48607282202854	3.35147641286747	3.10337343488709	2.9718165120109	-0.607389692084585	0.295042645921211	0.607132847913763
Merged-chr7-81372529-2	chr7	81372429	81372629	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357107)	promoter-TSS (NM_001357107)	-54.0	NM_001357107	12877.0	Mm.273122	NM_007755	ENSMUSG00000025586	Cpeb1	AU024112|Cpe-bp1|Cpeb|mCPEB|mCpeb-1	cytoplasmic polyadenylation element binding protein 1	protein-coding	2.81699075430149	3.15057622622469	2.95008977245026	3.12772128522229	3.07929462528454	3.0570509181932	3.00124244908866	3.01030052650424	0.0475002134131417	0.935811636631431	0.97668821823737
Merged-chr2-62460543-4	chr2	62460456	62460656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Plat_L3|LINE|CR1	23097.0	NM_008100	14526.0	Mm.45494	NM_008100	ENSMUSG00000000394	Gcg	GLP-1|Glu|PPG	glucagon	protein-coding	6.37665568271835	6.71944465713794	6.74359633063936	6.68400252840382	6.94787071010415	6.64832198559941	6.72355771913221	6.95054800579446	0.265499072712592	0.210943310780522	0.515615862570289
Merged-chr9-104710504-1	chr9	104710404	104710604	+	839.5	f0_balb.idr	intron (NM_028719, intron 2 of 15)	intron (NM_028719, intron 2 of 15)	141021.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	3.49903101932891	3.08630345369435	3.98426997253708	4.42140955306071	2.75501558457033	2.85730036742117	2.8184546519203	2.8248452547542	-5.45262917890748	5.39310227726455e-07	1.98899288597623e-05
Merged-chr2-126073465-3	chr2	126073368	126073568	+	751.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008008, intron 2 of 3)	intron (NM_008008, intron 2 of 3)	38810.0	NM_008008	14178.0	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	3.44328708369866	3.0691645863147	3.44382476920678	3.08071743026682	3.08468183553668	3.02981389321962	2.9808855347567	3.17771351911992	-0.758803998851811	0.197354487874089	0.498757148673523
Merged-chr13-35074264-2	chr13	35074164	35074364	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-80120.0	NM_001110331	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	3.29892885137679	3.07495552593813	3.07342328767334	2.91524258411491	2.97244269159473	3.30431173109277	3.12186870432315	3.07188372075221	0.119507425735066	0.8362809869814	0.937707063206507
Merged-chr6-113978463-4	chr6	113978378	113978578	+	990.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009723, intron 2 of 21)	intron (NM_009723, intron 2 of 21)	-43797.0	NM_001347365	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	5.24706166647627	6.41233397833534	6.03491954500098	6.09341890173229	5.45978234290769	5.39482809027373	5.39012983618449	5.72226408356785	-0.854069758100676	0.00902298627900095	0.0732740605080443
Merged-chr19-60819330-3	chr19	60819225	60819425	+	948.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026437, intron 3 of 8)	intron (NM_026437, intron 3 of 8)	7770.0	NM_001347464	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	3.60202717903793	3.35576541451722	3.60248957142046	3.40643256489546	4.31770689797917	4.39970246594173	4.59205446414068	4.26497825911229	2.52347964682408	1.63457728129223e-08	8.32838770974229e-07
Merged-chr4-136070159-4	chr4	136070062	136070262	+	948.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16791.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	4.31737280243506	4.44033383869163	4.41881906698753	4.31829782479475	5.09036383256288	5.03970281330258	4.94175105094105	5.14060421868072	1.43728965849212	1.45143031229209e-05	0.000384904779436779
Merged-chr3-60469490-4	chr3	60469400	60469600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-3330.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	6.81403391760921	6.94233352962839	6.99825627435344	6.41022471004053	6.97024883950654	7.0993377063627	6.76649596492485	6.91816458776542	0.208199590389847	0.357386201752552	0.663494847536382
Merged-chr6-87531722-4	chr6	87531638	87531838	+	885.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	1521.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	4.52616748403101	4.26032560738122	4.27508601059081	4.67991959425448	4.63722043244885	4.02567497531538	4.25656680824517	4.3619456812924	-0.247768420824307	0.553944593520359	0.800500121223594
Merged-chr12-82170054-4	chr12	82169912	82170112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167983)	promoter-TSS (NM_001167983)	-4.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	5.17585344285647	5.0237098225831	4.64014365353776	4.83041050211005	5.3951570304796	5.49616261427586	5.11958025888261	5.29266134504108	0.765486115098387	0.0154110883191801	0.10691480072816
Merged-chr14-106669513-4	chr14	106669413	106669613	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-182993.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	5.23055385366154	5.01928033490557	5.40247127504899	5.79899844078333	5.00723705339551	5.02190261914527	5.0442161666267	4.83885459604513	-0.811383192357384	0.017096473068788	0.115019835213919
Merged-chr8-110902446-4	chr8	110902347	110902547	+	998.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172283)	promoter-TSS (NM_172283)	41.0	NM_172283	234730.0	Mm.102591	NM_172283	ENSMUSG00000033703	Fuk	1110046B12Rik|AI303278	fucokinase	protein-coding	4.72685125305359	4.6958106075366	4.8794561824338	4.77064106151537	5.1061898839753	4.59318578487794	4.95820192480764	5.21827880681676	0.457270807143541	0.176574711402149	0.47171186293143
Merged-chr6-55167194-4	chr6	55167047	55167247	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7843.0	NM_009349	21743.0	Mm.299	NM_009349	ENSMUSG00000003477	Inmt	Temt	indolethylamine N-methyltransferase	protein-coding	4.79798320228716	4.37924314587196	5.01736699101903	4.59462115882123	4.50782899107022	4.57835159803654	4.18324440380014	4.68878815938959	-0.455647413176096	0.244976269026894	0.556124352309046
Merged-chr12-110738596-3	chr12	110738511	110738711	+	878.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347428, intron 1 of 2)	CpG	679.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	3.21806276754289	3.41512426880893	3.45353239700384	3.12497039129158	3.33077632516775	3.51404727322308	3.32866656880986	3.64993528238976	0.555105534119438	0.293010746424439	0.60553679205796
Merged-chr9-62847895-3	chr9	62847802	62848002	+	988.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033175, intron 5 of 6)	intron (NM_001033175, intron 5 of 6)	9115.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	4.44756691674645	4.53253962610495	3.99054678420544	4.14154009469201	4.0377864737658	4.27203267914285	4.02769100988652	4.51990379920891	-0.16368812818099	0.704590776923789	0.881307709007534
Merged-chr7-123203816-3	chr7	123203710	123203910	+	827.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11056.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	3.98920989575208	3.79201817329702	4.21990079580085	4.27322129988281	3.99650261523691	4.11266157376314	4.02213478577382	4.21721734968254	-0.0181068722028839	0.966604742518251	0.988217650432256
Merged-chr7-15912342-4	chr7	15912252	15912452	+	862.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10019.0	NM_009156	20364.0	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	4.32172909782943	4.3808702560165	4.09280921303248	4.3708277427092	3.9809038919155	4.1118856048336	4.21676326438162	4.43964803361958	-0.275090134756788	0.500309365303458	0.768850577358824
Merged-chr3-126630266-4	chr3	126630188	126630388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	L1ME2|LINE|L1	33337.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	6.20577688714639	6.39652832312954	6.40527441140316	6.46407761413852	6.20500005052464	5.83404349084531	6.25052887394893	6.01320907130236	-0.431029964961895	0.0676802136979956	0.27772454345726
Merged-chr3-36495643-4	chr3	36495552	36495752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11157.0	NR_040590	329623.0	Mm.490730	NR_040590	ENSMUSG00000085320	Gm11548	E330009D11	predicted gene 11548	ncRNA	6.63836977872148	6.79445856332536	6.49085315336717	6.78979603568959	6.59013076890392	6.93454826811885	7.01346286456306	6.57077114195302	0.133581858942247	0.547697722411524	0.796971609095299
Merged-chr2-165405397-6	chr2	165405295	165405495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_054055)	TTS (NM_054055)	-5001.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	5.87273550905493	6.31328463078783	6.50009189903182	5.81174809266461	6.11702451628933	6.16745838759138	5.86808964044197	6.07337482910739	-0.129071330434035	0.637423021876828	0.84676723244875
Merged-chr2-167063145-4	chr2	167063033	167063233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033196)	promoter-TSS (NM_001033196)	-118.0	NM_001033196	98999.0	Mm.297074	NM_001033196	ENSMUSG00000039501	Znfx1	AI481105|Astx3	zinc finger, NFX1-type containing 1	protein-coding	7.76469309704152	7.64894808055887	7.12931934676514	7.39024914225515	7.77765944661996	7.61695501420235	7.57604299439486	7.54693995688504	0.175415022066816	0.382512589155109	0.684560538944663
Merged-chr3-83899786-4	chr3	83899689	83899889	+	871.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172681, intron 33 of 34)	intron (NM_172681, intron 33 of 34)	-58181.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	3.77683862887174	4.26250970311443	3.99864033917376	3.80109095573178	4.02973586211054	4.3148219137912	4.21189059095648	4.35001264067372	0.66808538892135	0.121397167477314	0.385893577343147
Merged-chr2-113824100-4	chr2	113824009	113824209	+	758.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009162, intron 2 of 5)	intron (NM_009162, intron 2 of 5)	4982.0	NM_009162	20394.0	Mm.4836	NM_009162	ENSMUSG00000023236	Scg5	7B2|AI325031|Sgne-1|Sgne1	secretogranin V	protein-coding	3.86139445430261	3.98303965957043	4.01627678609351	3.929573838834	4.18341632946013	4.03716267294812	4.17786998617967	4.15153963708264	0.513929817812818	0.206706389172139	0.510696080350007
Merged-chr9-95548870-2	chr9	95548770	95548970	+	665.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10947.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	2.89182837154561	2.62727203342979	2.62176395731444	2.87766838143933	3.08183656177103	2.93653627837426	2.99692419891729	2.95033360007814	0.990782944716109	0.116386179406571	0.377466253427817
Merged-chr16-18406506-3	chr16	18406416	18406616	+	877.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007744)	TTS (NM_007744)	6978.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	4.05133662101632	3.64180428484505	3.58912486039901	3.69014697919256	3.37178859795498	3.81571659049603	3.45998888992407	3.53023134531629	-0.642068966323759	0.206648892904959	0.510642650514914
Merged-chr6-113649600-4	chr6	113649494	113649694	+	968.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	11127.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	5.23745950024932	5.89763817472066	5.41369554228566	5.35872665710339	5.23390790155882	5.21327332127232	4.93592438318963	4.70023600187255	-0.835430778525045	0.0143225976812805	0.101500217080433
Merged-chr8-104369781-1	chr8	104369681	104369881	+	546.0	f0_balb.idr	intron (NM_153582, intron 1 of 3)	L1MC4|LINE|L1	26026.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	3.11413655636287	2.95085664784339	3.05715481881338	3.17115231366472	2.66349530853357	2.83159004049029	2.98636168555245	3.27062205978424	-0.516028891963475	0.42059383226225	0.713388099239967
Merged-chr17-17601122-4	chr17	17601009	17601209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	B1F|SINE|Alu	23380.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	5.70326788630127	5.323945574164	5.10024676731302	5.40708150752237	5.74391188707866	5.16332296095496	5.86192510596088	5.29834423564926	0.277281424978711	0.391507621445531	0.691279263407274
Merged-chr16-64850943-4	chr16	64850850	64851050	+	822.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347245, intron 1 of 8)	intron (NM_001347245, intron 1 of 8)	773.0	NM_001347245	72020.0	Mm.25960	NM_028059	ENSMUSG00000047141	Zfp654	1600021C16Rik|1810008K20Rik|433036|Gm5488|Znf654	zinc finger protein 654	protein-coding	3.54757881527405	3.36764427150713	3.95630122758794	3.40395937354847	3.71464278105921	3.29268534990538	3.47972726865789	3.31260091378288	-0.372727134309131	0.499942701761454	0.768567019474278
Merged-chr18-56709012-4	chr18	56708913	56709113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010721, intron 1 of 10)	CpG	1200.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	7.59487015092323	7.85201534080334	7.90348443183677	7.95844720442747	7.92342293337855	7.69846238118554	8.22873152245578	7.88374414898626	0.141726199731004	0.451695274530692	0.736231233016262
Merged-chr2-169873631-3	chr2	169873532	169873732	+	815.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	89555.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	3.99564057448363	4.02934558052244	3.79557447937462	4.13841267476248	3.81013181241629	3.7389100918365	3.93230394742921	4.08310940580276	-0.308593052537221	0.487232094444013	0.760600900973846
Merged-chr3-152262897-4	chr3	152262789	152262989	+	942.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199465, intron 1 of 12)	intron (NM_199465, intron 1 of 12)	2906.0	NM_001357206	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	4.87042909913659	4.51606195378958	4.90663569794002	5.49899665095116	4.86476067300636	4.53298942704543	4.69699942210329	4.93770978473128	-0.498409233771179	0.211325611752651	0.515947922032722
Merged-chr19-31956587-4	chr19	31956494	31956694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87833.0	NM_001081074	69865.0	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	5.20232640944171	5.54967240728398	5.11106070609912	5.46951446300997	4.90507713483678	4.65335606905026	4.88125079511095	4.66017995472563	-1.1249505935465	0.000701388255186763	0.0101516002539437
Merged-chr5-29289903-4	chr5	29289814	29290014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020295, intron 8 of 16)	intron (NM_020295, intron 8 of 16)	88476.0	NM_020295	56873.0	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	5.56105845449726	5.47846648956465	5.6451649081324	5.8418503950654	5.99673829563207	5.68133753007489	5.92275352721464	6.04974224020949	0.438646206718224	0.098163775161739	0.343452583181155
Merged-chr9-44322392-3	chr9	44322293	44322493	+	693.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2111.0	NM_027909	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	3.57598343556156	3.58654036223693	3.68248164377475	3.56557701518743	3.74149260746177	3.51375158544829	3.93715862568555	3.39769876459894	0.212084280508337	0.666468304912796	0.862000851460164
Merged-chr19-9082690-4	chr19	9082581	9082781	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011681)	TTS (NM_011681)	5275.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	5.280899934358	5.55815126252842	5.28180315184899	5.28635602747858	5.15282812841698	5.07537417287576	5.45034138436215	5.11686764983026	-0.271489608557741	0.363519744214622	0.668574361907056
Merged-chr13-55754444-3	chr13	55754344	55754544	+	965.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028281, intron 2 of 3)	intron (NM_028281, intron 2 of 3)	27076.0	NM_028281	72562.0	Mm.28145	NM_028281	ENSMUSG00000021496	Pcbd2	2700061N24Rik|Dcoh2|Dcohm	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2	protein-coding	3.97341307507077	4.06713425594169	3.82883276696236	4.15621970777534	3.41710151861406	3.78488225714503	3.40047944519394	4.05973821386746	-0.954239941334968	0.0617660791298422	0.262954452354676
Merged-chr13-56181703-4	chr13	56181600	56181800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2815.0	NM_001168615	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	7.23222414526131	7.3398858364824	7.52653901716042	7.81489295952217	7.3759980080838	6.81998011143123	7.11801424459373	7.06406778839226	-0.524968063501569	0.0187610454778935	0.122648094789767
Merged-chr19-21377066-4	chr19	21376960	21377160	+	970.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95601.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	5.26819534177484	6.07671139837348	6.24072959032133	5.88796176872095	5.00514867449958	5.19850765953741	5.24271904220083	4.74537328621386	-1.50166519834266	1.02952775332933e-05	0.000282718965872795
Merged-chr13-23436419-4	chr13	23436346	23436546	+	824.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5429.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	3.85864588598154	3.79221201225834	4.04141054779635	3.61818441469256	3.95306438820112	3.50946710869158	3.68872329150916	3.99574881187816	-0.0524609555193508	0.913464440623327	0.967555550173756
Merged-chr7-74684162-4	chr7	74684063	74684263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-129383.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	7.91374491797563	7.7899027966047	7.81563839437942	8.3039879709122	8.2664152609844	8.35082626840254	8.04801832560449	8.19728086124854	0.300864336308128	0.113307891363822	0.372180083035785
Merged-chr9-65557185-4	chr9	65557082	65557282	+	768.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 5 of 5)	intron (NM_153119, intron 5 of 5)	22905.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	3.71797091813657	3.24120792434797	3.35893801596149	3.07256695838703	3.57293223511989	3.69558064166344	3.15827619061273	3.41496755419583	0.386461558420717	0.497538208852613	0.767090702736496
Merged-chr18-38455783-1	chr18	38455683	38455883	+	608.0	f0_balb.idr	intron (NM_001355749, intron 5 of 7)	intron (NM_001355749, intron 5 of 7)	36876.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	3.45549548420826	2.79192089191456	3.24864005763582	3.17208773816371	3.0952263894112	3.3038659142119	3.23578741338159	3.12925774266099	0.0237454348114548	0.968426958365416	0.988694268692349
Merged-chr15-59772707-2	chr15	59772606	59772806	+	778.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22253.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	3.20797169747342	2.92584784270085	3.08260553533886	2.75741385003533	3.35583788905681	3.49452719377271	3.36253650881406	3.42670032704471	1.64486973155909	0.00376042161241697	0.0381503777010016
Merged-chr2-167537631-3	chr2	167537526	167537726	+	895.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011427)	promoter-TSS (NM_011427)	-569.0	NM_011427	20613.0	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding	3.78056470036329	3.6721255699921	3.46539472522866	3.60006788246891	3.78947588197588	3.63838053094816	3.61852855595125	3.46370719225414	0.0221968559410538	0.963360922462054	0.986933466608449
Merged-chr12-91711840-4	chr12	91711742	91711942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	74594.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	7.59381659535192	8.02261749637457	8.07487812172769	7.98003258962162	7.55071698151813	7.42286424884772	7.66933738964721	7.80428923492546	-0.411259007371818	0.0299741004070611	0.167191167845326
Merged-chr5-64221200-2	chr5	64221100	64221300	+	932.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	RLTR11B|LTR|ERVK	-9157.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	3.02916754160565	2.63153291706246	2.84871577396893	2.30177156938293	2.68118150210184	2.89477446646498	2.95955873986172	3.18627597572145	0.922806498220525	0.206837012741632	0.510823764960849
Merged-chr6-142746948-4	chr6	142746858	142747058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9728.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	6.6607657999166	6.50197665935053	6.87739988355008	7.04192975867653	6.9302878790096	6.61823838992736	6.70364545937281	7.06750189792257	0.0668629585735992	0.771646860461927	0.910432508664506
Merged-chr15-103305304-4	chr15	103305204	103305404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	5134.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	8.26885053418408	8.373920296699	8.0109249917809	8.02894510558047	8.46573121383255	8.56250353148561	8.23133155139427	8.3422189982238	0.292175846779347	0.0910576527014988	0.329779953394528
Merged-chr1-177623626-4	chr1	177623517	177623717	+	797.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19326.0	NR_037994	75589.0	Mm.86666	NR_037994	ENSMUSG00000101746	2310043L19Rik	-	RIKEN cDNA 2310043L19 gene	ncRNA	4.01366724191351	3.62460640944578	4.30004598980683	3.61969219402552	4.00904948244257	3.63720996642784	3.90231012001667	4.05675081134536	0.00748617932255876	0.987951412105621	0.995370064932717
Merged-chr16-17531016-4	chr16	17530867	17531067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026909)	promoter-TSS (NM_026909)	85.0	NM_026909	69009.0	Mm.10174	NM_026909	ENSMUSG00000022760	Thap7	1810004B07Rik	THAP domain containing 7	protein-coding	7.30779518640787	7.34812147851872	7.72824045040107	7.12922720343198	7.43501518860538	7.5380964442322	7.27262828544405	7.49966961271854	0.0706968997837538	0.728210480571039	0.891832308956745
Merged-chr1-107584115-6	chr1	107584041	107584241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5865.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	6.19014175770014	6.24506339804252	6.08627128218081	6.06578353963852	6.36091476380826	6.60391341545816	6.47653529018797	6.28365076010906	0.434766111813215	0.0514159707020777	0.235504335817451
Merged-chr9-121840084-3	chr9	121839991	121840191	+	781.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028384)	promoter-TSS (NM_028384)	-630.0	NM_028384	100502861.0	Mm.335550	NM_028384	ENSMUSG00000079235	Ccdc13	2900041A11Rik|Gm188	coiled-coil domain containing 13	protein-coding	3.47976469222662	3.1894257560661	3.41726663128572	3.6422386290184	3.86074504156731	3.71721189845868	3.740570164824	4.20894906298483	1.32887928837963	0.0113825304843949	0.0865317886733677
Merged-chr7-86881092-3	chr7	86881001	86881201	+	754.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-34248.0	NM_001105189	637896.0	Mm.389957	NM_001105189	ENSMUSG00000091962	Vmn2r78	-	vomeronasal 2, receptor 78	protein-coding	3.43467820357818	3.16125755646811	3.38127928642046	3.54009758853072	3.43089230735417	3.10892127767017	3.47237031216982	3.32331836113456	-0.168531817614164	0.757503099162462	0.904775948438321
Merged-chr18-88952904-4	chr18	88952811	88953011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-18879.0	NM_175542	246102.0	Mm.772	NM_175542	ENSMUSG00000023066	Rttn	4921538A15Rik|AI666264|C530033I08Rik|D230040K24	rotatin	protein-coding	5.63059337667843	5.10355234001516	5.86279611721273	5.98710069644406	5.48414548129059	5.39423473588493	5.38321787689503	5.6019598046156	-0.391152364788539	0.216055879912192	0.522461065951076
Merged-chr7-16728779-2	chr7	16728679	16728879	+	709.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30|LTR|ERV1	6850.0	NM_011927	26368.0	Mm.27096	NM_011927	ENSMUSG00000007209	Ceacam9	AA410097|AW545709|Cea-5|Cea5|mmCGM8	carcinoembryonic antigen-related cell adhesion molecule 9	protein-coding	3.31624463851711	3.09128046288058	2.86873097521311	3.13249938957187	2.99819772924749	3.53758642108247	3.24828593641239	3.36786297024024	0.691820028479762	0.240075117204922	0.550489877183466
Merged-chr3-146645696-1	chr3	146645596	146645796	+	601.0	f0_balb.idr	TTS (NM_029144)	TTS (NM_029144)	3764.0	NR_045949	100286843.0	Mm.475299	NR_045949	ENSMUSG00000085810	Gm16325	-	predicted gene 16325	ncRNA	2.80309243212562	2.76295353311403	2.97297318798183	2.72099499974254	2.68740942985428	2.55995640692697	2.79341381878531	2.80203702298562	-0.48152292932415	0.456764663672386	0.740072330310487
Merged-chr4-48045949-4	chr4	48045852	48046052	+	841.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015743, intron 1 of 7)	intron (NM_015743, intron 1 of 7)	647.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	4.24532474876754	3.9867895116528	3.95062254933521	3.82653987344343	4.70413852963547	4.12981772709665	4.38994398916962	4.24330003973025	0.994150501055976	0.0184619795666223	0.121397058897411
Merged-chr6-15754016-4	chr6	15753911	15754111	+	936.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	33350.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	4.16030061267048	3.80685945771244	4.29991128351923	4.88327620185805	4.69426233988314	3.75104860707379	4.2362418033303	4.34031499504399	-0.131785074862838	0.805028691992013	0.925171083261684
Merged-chr5-105062618-4	chr5	105062517	105062717	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9056.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	5.69888984605891	5.28852638139834	5.43801519360209	4.78680357669107	5.97894332429079	5.52499865263987	5.73921522170818	5.43418856667949	0.634698346823182	0.0587332839148379	0.255129980331982
Merged-chr8-71702211-10	chr8	71702064	71702264	+	864.156677	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028189)	promoter-TSS (NM_028189)	-364.0	NM_028189	72297.0	Mm.290837	NM_028189	ENSMUSG00000031803	B3gnt3	2210008L19Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding	4.66147561690082	4.4809039816339	4.18183405281954	4.13788071455452	4.12300223702695	4.15253283183432	4.25661458346942	4.44187532136934	-0.306933077765414	0.457833578857146	0.740862073979297
Merged-chr13-5774045-4	chr13	5773963	5774163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84029.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	6.72374548273817	6.97970447570821	6.96394109537005	7.15409485956958	6.67005935623351	6.6259024620864	6.28118075665526	6.2885671962152	-0.696541852119693	0.00200767145687528	0.0234653606944048
Merged-chr2-90584786-2	chr2	90584686	90584886	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4139.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.25381277626901	2.4773013941828	2.6031287233665	2.82612052732888	2.95757983834454	2.92404792760443	2.9285911681384	2.87758519700057	0.424989467496843	0.552774014565842	0.799873237323185
Merged-chr9-65552446-4	chr9	65552379	65552579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153119)	TTS (NM_153119)	27608.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	7.55728276172705	7.76290925581214	7.93984706149592	7.91340783034028	7.47606888699623	6.99396186431188	7.27658788996435	7.45124605125051	-0.64226191541913	0.00115444445069971	0.0151053596530208
Merged-chr17-84285203-3	chr17	84285104	84285304	+	672.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 29 of 37)	intron (NM_183021, intron 29 of 37)	-97257.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	3.87817217377115	3.6363696668545	3.68244839242551	3.87512632930164	3.37383050606498	3.50115708390944	3.8615108219836	3.78214197546697	-0.419522741977276	0.397504648616792	0.695919113163654
Merged-chr5-107763841-4	chr5	107763738	107763938	+	939.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 17 of 17)	intron (NM_007964, intron 17 of 17)	-38033.0	NM_001267621	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	4.99126097916875	5.01982067120979	4.77172349259585	4.95085346374918	5.14437954466086	4.6880563874148	4.86343771402589	5.17611654443001	0.1061031814261	0.747817090928652	0.90068822490119
Merged-chr16-87655205-4	chr16	87655097	87655297	+	990.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43757.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	5.7659395806634	5.85047143373262	6.49043106025035	6.19977005755377	5.2316686560129	5.73287738018854	5.49704919810814	5.29584405281791	-1.0994468263938	0.000262106480898578	0.00453818467620527
Merged-chr18-12130313-4	chr18	12130225	12130425	+	559.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024182, intron 1 of 12)	intron (NM_024182, intron 1 of 12)	1475.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	3.6273529855475	3.48948925672077	3.27892607837419	3.51942886264209	3.61501045741033	3.69262574436816	3.39369016831622	3.76993617793942	0.440642063229757	0.376856316178501	0.679494401442451
Merged-chr8-71396702-4	chr8	71396598	71396798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181418)	promoter-TSS (NM_181418)	-157.0	NM_026636	68251.0	Mm.21749	NM_026636	ENSMUSG00000031820	Babam1	5430437P03Rik|Merit40	BRISC and BRCA1 A complex member 1	protein-coding	8.04889136852251	8.21026707090719	8.02285707986335	8.11543867762293	8.38785868190701	8.53803641748864	8.36765298539521	8.27296834067223	0.369731983004171	0.0178539501959037	0.118558290978097
Merged-chr3-145905767-3	chr3	145905663	145905863	+	733.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18499.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	3.1770313251505	3.0137049954739	3.17746232089913	3.45276525734517	2.85166913369689	3.10763340447319	2.92472089188317	2.99760364898058	-1.0676182744431	0.0786015100225968	0.30332214052038
Merged-chr7-74679207-3	chr7	74679110	74679310	+	749.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124430.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	3.29126704802521	2.95700811775997	3.2322549684475	3.40253737478654	3.40110254562489	3.28126494132162	3.33548281415711	3.59752787782585	0.599064671751285	0.283121911144574	0.595263611222688
Merged-chr5-138341904-4	chr5	138341804	138342004	+	956.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61395.0	NM_016964	50878.0	Mm.285609	NM_016964	ENSMUSG00000036928	Stag3	SA-2	stromal antigen 3	protein-coding	4.61402139379771	4.68997485575791	4.91047966146285	4.98839695751095	4.51434632001436	4.70511923123501	4.85347224797151	4.61180482166679	-0.318783142309568	0.36478815281695	0.669570023191874
Merged-chr18-35745435-4	chr18	35745352	35745552	+	751.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11D|LTR|ERVK	-4898.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	4.16226228201071	3.94685133662767	3.72550370433771	3.61796347738015	4.15547187809276	3.95788383617615	3.7113515321535	4.118458795566	0.365813841254232	0.434326218246435	0.723629649561421
Merged-chr11-17180908-4	chr11	17180805	17181005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 1 of 5)	intron (NM_024459, intron 1 of 5)	21607.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	5.56959779743415	5.79328172720801	5.54278305917908	6.17571330193329	5.68555676160334	5.54041369525827	5.42849982380497	5.53890125735354	-0.441056045041626	0.135196671376141	0.409349593042737
Merged-chr5-67304005-4	chr5	67303904	67304104	+	903.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2951.0	NM_178651	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	4.49366223858322	4.34902881938349	4.62178957236306	5.04668743161642	4.68836680605474	4.48344671499703	4.75126909144788	4.96932787108326	0.119268929558346	0.762714921638114	0.907011913026374
Merged-chr5-21141437-4	chr5	21141347	21141547	+	967.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34832.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	5.16517605155195	4.75216752798833	5.10510375552406	5.19425046221841	4.8148865077888	5.00230508411444	4.84207956110825	4.97017855145827	-0.329513473981495	0.311609768273085	0.623631959698671
Merged-chr6-86593627-4	chr6	86593523	86593723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-34551.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	5.72992500234658	6.13987830492904	5.55960313207915	5.81969035129733	6.22994444298349	6.2545304602981	5.77922850085098	6.38019554031002	0.542123665518703	0.04659202898981	0.221905254698273
Merged-chr13-12027810-2	chr13	12027710	12027910	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023868, intron 1 of 104)	intron (NM_023868, intron 1 of 104)	79135.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	3.63088277779954	3.55015866599217	3.57544513303594	4.11684031048573	3.86133047390284	3.69131780251019	3.56223348326751	3.62941347662252	-0.193059140275823	0.707904455589994	0.882657741545225
Merged-chr5-90504902-4	chr5	90504800	90505000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007423, intron 10 of 14)	intron (NM_007423, intron 10 of 14)	-14049.0	NM_145146	280662.0	Mm.348786	NM_145146	ENSMUSG00000029369	Afm	Alf|alpha-Alb	afamin	protein-coding	6.29960562541124	6.26491788455154	6.38414845521653	6.22129237496487	5.89393345939293	6.16501862170558	5.60577874772488	5.3735995729192	-0.777238942576903	0.00411793166182793	0.0409772483932965
Merged-chr4-40202407-3	chr4	40202305	40202505	+	930.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	37420.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	3.96346041168683	3.6262297257775	3.86656934060659	3.95772768451912	3.80651297859793	3.82389325144558	4.03635620970656	4.05203550022205	0.185446558394894	0.678200463876384	0.868027813968985
Merged-chr11-96977332-3	chr11	96977271	96977471	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 1 of 6)	CpG	317.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	6.25861873710669	6.26546290089979	6.57718741260824	6.20658826873585	6.57081576167964	6.70527615848774	6.58925005441679	6.71927730099763	0.470066246142212	0.0302179024597091	0.168076899209161
Merged-chr8-71404351-2	chr8	71404272	71404472	+	796.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_026636, exon 9 of 9)	exon (NM_026636, exon 9 of 9)	-1640.0	NM_001310502	234396.0	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	2.85016803204439	2.95014699823728	2.85044888575955	2.82274630396099	3.26526133138729	3.39599023048678	3.10118549005839	3.37903254575982	1.70576480549894	0.00279847507268293	0.0302603718527596
Merged-chr3-37038031-6	chr3	37037955	37038155	+	888.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172679, intron 74 of 85)	intron (NM_172679, intron 74 of 85)	-25601.0	NM_009350	21744.0	Mm.8122	NM_009350	ENSMUSG00000027719	Adad1	Tenr	adenosine deaminase domain containing 1 (testis specific)	protein-coding	3.7600616855448	3.75414357724919	4.0850886687876	3.96633926953489	3.83586368334302	3.93241446327573	3.45491626644261	3.70466683979527	-0.45130451409769	0.34370045287516	0.652293148518891
Merged-chr11-103359293-4	chr11	103359210	103359410	+	928.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_183288)	TTS (NM_183288)	4382.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	4.44827323533915	4.59102772723522	4.17033759802425	4.53851888067955	4.45338827033002	4.34799607823509	4.58409864002547	4.44615087609732	0.0109573415630779	0.976757287558332	0.991709440769007
Merged-chr2-70971222-4	chr2	70971120	70971320	+	870.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 7 of 9)	intron (NM_145524, intron 7 of 9)	47154.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	4.42236285486775	4.42096776046139	4.54685169047668	4.47829896934371	4.40480879556264	4.41438348169582	4.83428344700431	4.28349439394378	0.0733648468350004	0.846037541502668	0.941772034818004
Merged-chr2-153779649-2	chr2	153779549	153779749	+	880.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1230.0	NR_036629	100504221.0	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	3.50550012595183	3.77332687134641	3.39362332517205	3.07985984246925	3.43936652074263	3.31828751022876	3.59374028645192	3.50399577812746	0.0383361673616534	0.94473310801429	0.980135813539954
Merged-chr7-114083918-3	chr7	114083830	114084030	+	921.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	33851.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	3.96228222467862	4.52748649678696	3.90460126042485	3.27663785219987	4.85486738514442	4.76062873424888	4.49370372482948	3.96053960186384	1.3079633656752	0.0155389505059265	0.107539811187296
Merged-chr10-128525287-4	chr10	128525219	128525419	+	939.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011843, intron 1 of 30)	CpG	540.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	4.8266330538543	4.42254797362792	4.15107536905878	4.41012961678474	4.18442856579963	4.38010652793175	4.64066275895286	4.34259881758932	-0.18199167795339	0.654023408030683	0.855371383217257
Merged-chr7-125555668-4	chr7	125555568	125555768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	3386.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	6.72731392596896	6.56339435228351	6.7739790704959	6.78037610306693	7.041668902719	7.31037979651185	7.28399398672	7.27637185573003	0.704647717482897	0.000308214066938089	0.00518392463860733
Merged-chr13-75822643-3	chr13	75822549	75822749	+	774.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17236.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	4.05869478841386	3.90209529393187	3.85610316350093	3.98533370841127	2.83623021961998	3.1403006654908	3.09382477204399	3.31530363777036	-3.63971700100041	3.42165269507353e-07	1.31152297890489e-05
Merged-chr12-84675178-4	chr12	84675132	84675332	+	910.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23575.0	NM_001033334	627191.0	Mm.152484	NM_001033334	ENSMUSG00000071234	Syndig1l	DSPC1|Gm261|SynDIG2|Tmem90a	synapse differentiation inducing 1 like	protein-coding	3.60001570544841	3.64183388224705	3.23105256658227	3.25684545226318	3.8332969117072	3.48142931030437	3.68783734501782	3.92770354760593	0.97269976265713	0.0576795585737341	0.252068780036244
Merged-chr7-99155530-3	chr7	99155421	99155621	+	956.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026384, intron 7 of 7)	intron (NM_026384, intron 7 of 7)	-14377.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	2.9499304694545	2.72278358167512	3.02467028223606	2.70954358985939	3.4387148242307	3.2149402147088	3.68057916008834	4.07303194800452	3.03315520543748	1.37474863247177e-06	4.67079870695505e-05
Merged-chr12-84803234-3	chr12	84803136	84803336	+	871.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 16 of 34)	MTC|LTR|ERVL-MaLR	29966.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	3.92490059217013	4.36405527550872	3.82484925089482	3.1609901336978	3.79436819256559	4.05059414749623	3.8085455066207	3.71378347005371	-0.130289512969994	0.816218985045909	0.929279917090528
Merged-chr8-105966101-4	chr8	105966003	105966203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253804)	promoter-TSS (NM_001253804)	12.0	NM_001253804	20498.0	Mm.292447	NM_009195	ENSMUSG00000017765	Slc12a4	AW546649|KCC1|RBCKCC1	solute carrier family 12, member 4	protein-coding	6.08378078809281	5.99829516611996	5.67664941585597	5.85030815798393	5.56466218038111	5.87942683997413	5.88932133221062	5.84727447748128	-0.18891642479701	0.467567416437547	0.747026558181345
Merged-chr7-3800127-3	chr7	3800018	3800218	+	644.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289428, intron 12 of 12)	intron (NM_001289428, intron 12 of 12)	44933.0	NM_011089	18725.0	Mm.482470	NM_011089	ENSMUSG00000089942	Pira2	6M23	paired-Ig-like receptor A2	protein-coding	2.65320304474601	2.58814003777613	2.65344204790735	2.22170455928334	3.88725376151414	3.4147984269279	3.70424200504059	3.39777448404512	7.53974944397311	4.11072657938482e-14	5.75979148019748e-12
Merged-chr5-143039011-4	chr5	143038903	143039103	+	847.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	74017.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	4.57548828494734	4.84385801174614	4.34191602622188	3.75531813609644	4.15174857537328	4.28631432490201	4.13982580146207	4.05293439840766	-0.666442646476903	0.161776982111901	0.450760346423824
Merged-chr2-132269415-4	chr2	132269327	132269527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	6279.0	NM_138651	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	6.53481490621887	6.77399487647849	6.9179833311608	6.882817977306	6.62167199006362	6.60666932836043	6.97998032681704	6.7936271732852	-0.050326559911602	0.81480656696759	0.92854851400975
Merged-chr12-84617464-4	chr12	84617375	84617575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008992)	promoter-TSS (NM_008992)	-9.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	7.20326487593465	7.483680056627	7.38284113643241	7.27565399572167	7.29930174442866	7.16093817440322	7.45783085066471	7.1536983513153	-0.0850043346376533	0.649478981671405	0.852765387769805
Merged-chr10-121370972-3	chr10	121370868	121371068	+	872.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	B3|SINE|B2	5878.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	3.5002277198809	4.09623557638551	3.80228518049124	3.25757043356916	4.30186890037965	3.97899264271413	4.11503771624588	3.95283005286243	1.1088099278394	0.0304691448873667	0.16894626968434
Merged-chr4-62322863-4	chr4	62322759	62322959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 17 of 27)	ORR1E|LTR|ERVL-MaLR	31312.0	NM_001290518	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	6.18974994533555	6.29584220056061	5.95111387984464	6.42415951888877	6.18119126353613	6.26413075392608	6.60312822045411	5.94688462239658	0.0442773824016349	0.863848804972868	0.948857968722629
Merged-chr6-134558923-4	chr6	134558788	134558988	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	8025.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	3.52194158752514	3.64354442232104	3.72300824446937	3.53921399049945	4.65876798336104	4.18334993751509	4.21659334556086	4.72145207116078	2.29204690875464	2.58194976741506e-07	1.01424173562272e-05
Merged-chr17-70996176-3	chr17	70996067	70996267	+	818.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357820, exon 3 of 4)	exon (NM_001357820, exon 3 of 4)	1845.0	NM_001357820	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	3.65807928756722	3.78553881926912	3.78850725991656	3.46094227575311	2.80876728394459	2.89999932469334	2.94201591856556	3.1633271196705	-3.20647182719779	6.97300220420868e-06	0.000199811322018265
Merged-chr14-54641647-5	chr14	54641561	54641761	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199470)	promoter-TSS (NM_199470)	-297.0	NM_199470	239096.0	Mm.386871	NM_199470	ENSMUSG00000059674	Cdh24	1700040A22Rik	cadherin-like 24	protein-coding	4.21730498814401	4.4368785941694	4.44756706587436	4.24179081239053	4.47263037908057	4.66056339472911	4.34113608398361	4.7428119890088	0.518451908104818	0.165588079675603	0.45641240409037
Merged-chr13-102144013-4	chr13	102143920	102144120	+	925.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-375803.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.25440191785889	4.12607688272615	4.3873194285677	4.33879239174681	4.585225814805	4.28448111425912	4.48594629496329	4.29801829526958	0.343046299410081	0.370330941566238	0.674508344159244
Merged-chr11-93887215-4	chr11	93887115	93887315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346525, intron 2 of 17)	intron (NM_001346525, intron 2 of 17)	996.0	NM_134012	103537.0	Mm.210334	NM_134012	ENSMUSG00000059474	Mbtd1	AA408199|AI194990|hemp	mbt domain containing 1	protein-coding	6.39270534843263	6.75202344693042	6.22016320874656	6.40205240889592	6.57153938577641	6.67340297706122	6.51301172819911	6.38926534496389	0.120328229258254	0.597679900322906	0.825502233920329
Merged-chr4-59569766-4	chr4	59569671	59569871	+	936.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-11792.0	NM_001301367	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	5.29681703392012	4.8574899486085	5.01929019665284	5.27664662730444	5.24122672322891	5.19320789725736	4.88776794177956	4.78973418019676	-0.157928856139395	0.635516082101902	0.845758609104072
Merged-chr6-29624005-3	chr6	29623900	29624100	+	905.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14151.0	NM_001347079	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	4.0802650051709	4.35662784147162	4.54095940558396	4.21212481531728	3.3789467894757	3.70259595478715	3.86530083661825	3.8242179148826	-1.74131690827261	0.000339309100271275	0.00561536443808629
Merged-chr6-146410398-4	chr6	146410282	146410482	+	948.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 9 of 56)	intron (NM_019923, intron 9 of 56)	91841.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	4.76628286655946	4.69951630234863	4.92046154375008	4.30648416464545	5.35445203732305	4.94556709447898	5.26682961814418	5.31667127400316	1.12216165888855	0.0011038049587329	0.0145411092949457
Merged-chr9-70841567-1	chr9	70841467	70841667	+	566.0	f0_balb.idr	intron (NM_001324473, intron 1 of 8)	L1ME3|LINE|L1	93241.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	3.27963873936416	3.007715970775	3.0555753174975	3.14699352423513	2.9919539037522	2.89149350764698	2.84957531481863	3.42333255958587	-0.262663186040547	0.669294914962176	0.863479905771059
Merged-chr4-24617043-4	chr4	24616947	24617147	+	872.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033531, exon 10 of 10)	3' UTR (NM_001033531, exon 10 of 10)	120596.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	4.58484935004751	4.38521301570746	4.50931297806588	4.68718229945397	4.10220056373184	4.32621161353055	4.32219664891917	4.3827303969735	-0.65100127272431	0.0881573008131667	0.323918465547202
Merged-chr12-80793042-4	chr12	80792938	80793138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	2506.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	6.39909498879587	6.67135063889611	5.5793779870414	5.77873981440038	6.53326379171259	6.67191479116352	6.08759584390663	5.91041527213024	0.238110506518528	0.476247709547258	0.752822308242783
Merged-chr7-122196868-3	chr7	122196746	122196946	+	760.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10615.0	NM_001316689	26918.0	Mm.20452	NM_012016	ENSMUSG00000030866	Ern2	Ern1|Ire1|Ire1b|ire1-beta|mIre1	endoplasmic reticulum (ER) to nucleus signalling 2	protein-coding	3.57606523150045	3.47776180257054	3.52626304024457	3.26140348071099	3.31876271573299	3.1439067988835	3.65496605845844	3.30084412172067	-0.308079120685205	0.570540402012975	0.810152119115078
Merged-chr14-50955740-3	chr14	50955616	50955816	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001123371)	promoter-TSS (NM_001123371)	-425.0	NM_001123371	667034.0	Mm.482171	NM_001123371	ENSMUSG00000068417	Pnp2	-	purine-nucleoside phosphorylase 2	protein-coding	3.16300387021881	3.06301341232103	3.16336823155489	2.44410076115191	4.42360810147831	4.65575577049444	4.67824795317076	4.78683027147615	7.96233893676093	4.76352206288673e-19	1.41867253939002e-16
Merged-chr2-90573586-3	chr2	90573475	90573675	+	779.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	7072.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.58349879807718	3.34555473331121	3.05184307870119	2.799554438803	3.72211185302926	3.36938227098684	3.30214960652401	3.58179172218937	0.971596009817269	0.111483419914963	0.368917290310693
Merged-chr10-44529534-4	chr10	44529431	44529631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-70783.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.58171097631232	6.48642710950983	6.37308537406395	6.6323856968576	7.05280970737455	6.62261973401279	6.8375812026019	7.01247861975717	0.529366219409148	0.0134577392628296	0.0973278595277587
Merged-chr7-89500126-3	chr7	89499986	89500186	+	722.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17500.0	NM_029614	76453.0	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	3.52127716101542	3.85207946440243	3.46717574246848	3.80705754706521	3.11263685514346	3.46494527554202	3.33866667705878	3.22141415622424	-1.40040360117553	0.010573055160207	0.0821886513203953
Merged-chr10-7680227-6	chr10	7680081	7680281	+	766.069458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033219, exon 1 of 1)	non-coding (NR_033219, exon 1 of 1)	954.0	NM_001358649	18537.0	Mm.258431	NM_008786	ENSMUSG00000019795	Pcmt1	C79501|PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1	protein-coding	4.52077654787829	4.60214572191428	4.35898961214841	4.36595032040855	4.54553572489011	4.24746111069261	4.29585612412967	4.01134614914436	-0.378242028279328	0.345770437500325	0.654102820724662
Merged-chr10-40527775-2	chr10	40527675	40527875	+	852.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42587.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	2.7864090534709	2.74653270429343	3.01018555332304	2.72608918746273	2.74107993123827	2.61909628372684	2.65034654051499	2.6572772085852	-0.715673667210201	0.273797579691573	0.585497971228284
Merged-chr2-167641589-4	chr2	167641494	167641694	+	725.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9589.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	3.76154941190148	3.82526873644401	3.76208866949273	3.81643278943288	3.36139470580649	3.82909277363581	3.69515610636335	3.85780227294617	-0.310170255856425	0.519599924958653	0.780216506521359
Merged-chr9-90114708-4	chr9	90114617	90114817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357780, exon 1 of 13)	5' UTR (NM_001357780, exon 1 of 13)	103.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	8.45219254506438	8.45847641443184	8.16499986369271	7.86365135586341	8.7705602785985	8.72410108602174	8.85894117167389	8.2156011359242	0.522856432310659	0.0129736646202552	0.0948834008678995
Merged-chr11-116811410-2	chr11	116811291	116811491	+	796.25	f0_balb.idr|f0_c57.idr	intron (NM_001347633, intron 3 of 4)	(CAGAG)n|Simple_repeat|Simple_repeat	16655.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	4.74779300439962	4.68197192016371	4.67854549863281	4.55431037594617	4.15000255261873	4.43331375760844	4.46372885149223	4.3489826649342	-0.725556103456313	0.0507040197780397	0.233475315291829
Merged-chr3-8981859-4	chr3	8981766	8981966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-17720.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	6.7783627727983	6.0572887290293	6.61159176245449	6.88014809952877	6.7132809421088	6.89824408462643	7.32616577874781	7.08897317071758	0.558120288291081	0.0329935340742866	0.178263759061306
Merged-chr18-5296193-3	chr18	5296088	5296288	+	828.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360447, intron 1 of 4)	intron (NM_001360447, intron 1 of 4)	38251.0	NM_178722	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	3.32336858708375	3.05268067616172	3.55969919962813	3.29190958048429	3.01455894077324	2.91948266920659	3.4102858113419	3.09066730154129	-0.763762292024285	0.207039935254751	0.511049184276
Merged-chr5-118095681-4	chr5	118095617	118095817	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172721, exon 6 of 11)	exon (NM_172721, exon 6 of 11)	59741.0	NM_172721	231672.0	Mm.221769	NM_172721	ENSMUSG00000032867	Fbxw8	4930438M06Rik|FBW6|FBW8|FBXO29|Fbx29	F-box and WD-40 domain protein 8	protein-coding	4.36767845252942	4.53111527519507	4.36837518199712	4.34585614838128	3.95526175123208	4.00115069120083	4.30722927629584	4.09440866751824	-0.783129962361297	0.052479904443846	0.238703247390154
Merged-chr16-8738968-4	chr16	8738880	8739080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003918)	promoter-TSS (NM_001003918)	-638.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	6.51704949433513	6.61540395919619	6.37633951197968	6.61986738175963	6.58332413349534	6.66077747066388	6.81979105019076	6.62573265911624	0.18405833517527	0.37741850473486	0.680062196351843
Merged-chr1-171389016-4	chr1	171388979	171389179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027893)	TTS (NM_027893)	119.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	7.96290858190569	8.0611800051395	7.83159417245605	7.70030706440921	7.95032196333275	8.23603914710141	8.17770786532304	8.23374158892732	0.334877079951687	0.0553272498442121	0.245964544167208
Merged-chr2-75829144-4	chr2	75829043	75829243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3034.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	6.3545061374968	6.34408617334335	7.02731603750596	6.74630746514995	6.03724311295128	5.89101036534395	6.32296829640258	6.29543937725678	-0.74974523817468	0.0043909137745059	0.0431175998263386
Merged-chr11-58965274-4	chr11	58965216	58965416	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_031172, exon 2 of 7)	exon (NM_031172, exon 2 of 7)	1535.0	NM_031172	56631.0	Mm.179733	NM_031172	ENSMUSG00000036964	Trim17	Rnf16|terf	tripartite motif-containing 17	protein-coding	4.55235443705405	3.89427695233559	4.29885758631745	4.32561595395172	4.77524655500122	4.2777759241464	4.60539096414661	4.62457083292314	0.69175732131711	0.0885805694847452	0.324772702481544
Merged-chr3-79219727-2	chr3	79219627	79219827	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	MTA_Mm|LTR|ERVL-MaLR	6808.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	2.47597548214085	2.38980700505328	2.53716731163598	2.20346112146784	2.25977901987231	2.37699636345389	2.33782959173971	2.3441976567414	-0.428638919214196	0.561476316940362	0.80494560024742
Merged-chr6-124279610-3	chr6	124279503	124279703	+	970.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25048.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	4.38709352717725	4.1575463546647	4.6759152854889	4.99565792419153	3.72840129261563	3.84105070009541	4.14915642875443	3.7144899143959	-1.90153021850941	7.45475900026888e-05	0.00158158656000041
Merged-chr2-6238482-2	chr2	6238382	6238582	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 1 of 6)	intron (NR_040333, intron 1 of 6)	-25488.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	3.21958778198132	2.94305954223213	3.27981418896735	3.21758713183783	3.39087016941647	3.45123547356894	3.37797452639116	3.49263344697183	0.916472315706485	0.0864369282670033	0.320645565745298
Merged-chr4-59455192-4	chr4	59455096	59455296	+	930.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-16563.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	4.77082970374425	4.9256747453587	4.77162007956214	4.75883096346737	4.41232936321494	4.79273144751677	4.63721741430312	4.29699069453979	-0.575714794624847	0.108753942813035	0.364059488100881
Merged-chr17-56472992-4	chr17	56472895	56473095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 1 of 27)	intron (NM_001252455, intron 1 of 27)	3485.0	NM_001252455	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	6.34718882262405	6.65415330438048	6.50331379407739	6.49491094207559	6.15065275398075	6.59523893258358	6.31582678671568	6.20857102448222	-0.277151830061946	0.225216975336808	0.533574726650866
Merged-chr4-126429605-4	chr4	126429525	126429725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153402)	promoter-TSS (NM_153402)	-83.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	6.55698026192746	7.1492932005681	6.73808502824065	6.60010981133253	7.08355501764513	7.22388941046674	7.06991325486184	7.17788857690592	0.497345679903099	0.0221324347546267	0.137035888430721
Merged-chr2-157458634-4	chr2	157458538	157458738	+	894.962524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 5 of 13)	intron (NM_001025395, intron 5 of 13)	34345.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	4.24818645540121	4.49954548119672	4.20108894817967	4.09411045355492	4.19053514473704	4.67254758739889	4.36227950672906	4.42103968325514	0.363964907797897	0.362033100591999	0.667306442775501
Merged-chr8-45439394-4	chr8	45439311	45439511	+	935.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28792.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	4.90002190456005	4.90749533047996	4.50746742896926	4.82286428383731	5.01912468539985	4.77226787330958	4.44136429758254	4.86325980185129	0.00632745228026998	0.985931370875893	0.994788540667462
Merged-chr17-63499902-5	chr17	63499705	63499905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_015794, exon 1 of 9)	exon (NM_015794, exon 1 of 9)	775.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	5.69044595359293	5.42477279087568	5.74102422855639	5.78135737398278	5.48196915489595	5.55640354581239	5.95269873456569	5.9384300285573	0.119424738047817	0.670727383074195	0.864228384197496
Merged-chr3-58576700-4	chr3	58576694	58576894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001040396, exon 1 of 6)	exon (NM_001040396, exon 1 of 6)	158.0	NM_001040396	69227.0	Mm.270950	NM_001040396	ENSMUSG00000075700	Selenot	2810407C02Rik|5730408P04Rik|Selt	selenoprotein T	protein-coding	5.59401908549092	5.11289586945851	5.94643893650171	5.51633741323797	5.56029644467262	5.9908799127986	5.78762685518287	5.71928696385962	0.332214070830342	0.270552113984787	0.582382100623679
Merged-chr1-174084942-3	chr1	174084839	174085039	+	823.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4099.0	NM_146722	258717.0	Mm.377652	NM_146722	ENSMUSG00000049528	Olfr429	MOR105-1	olfactory receptor 429	protein-coding	3.52652251547742	3.14827394887666	3.37034844659308	3.77618561779739	3.1753821144567	3.01829234970486	3.24262264568718	3.47490372365183	-0.88364486899894	0.135460724749885	0.409703362240677
Merged-chr1-39482397-4	chr1	39482338	39482538	+	918.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3683.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	3.71560821936023	3.88457092139691	4.25427431669299	3.59641355086381	3.61873495126006	3.77892365627863	3.95089890303973	3.82086523066284	-0.238970904001024	0.624121189757752	0.839276569130445
Merged-chr5-67404546-4	chr5	67404466	67404666	+	836.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164806, intron 3 of 4)	GA-rich|Low_complexity|Low_complexity	23233.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	3.85709161587467	3.95388791533344	3.8576410312826	4.20648286499225	3.771152042538	3.92589999629752	3.50158698104542	3.95252248917489	-0.546859744498449	0.245721988114671	0.556854576459429
Merged-chr16-36657850-3	chr16	36657768	36657968	+	920.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	8209.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	4.13042727995076	4.28764574449777	3.73447081404098	3.69248842480296	3.77687249851151	4.12022086454909	3.97874034585797	3.78905211223952	-0.165810978876094	0.727396844162431	0.891495427977301
Merged-chr2-165075107-3	chr2	165075011	165075211	+	704.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15639.0	NR_033448	72211.0	Mm.482899	NR_033448	ENSMUSG00000078935	1700025C18Rik	-	RIKEN cDNA 1700025C18 gene	ncRNA	3.15844464084302	3.69030274528037	3.08591155005571	3.27807523393602	3.6986410096496	3.53314195424692	3.84141763765245	3.58018603520756	1.11495677860542	0.042559356898342	0.209581528184532
Merged-chr4-101654778-4	chr4	101654618	101654818	+	862.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175036, intron 2 of 3)	intron (NM_175036, intron 2 of 3)	6935.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	3.8491494689642	3.69943054254849	3.51731686010933	3.73719752639102	3.87393264346739	3.86740072132207	3.7329582103572	4.07044395446336	0.530229248922361	0.244061874906923	0.555147463737798
Merged-chr10-80557534-2	chr10	80557391	80557591	+	893.0499880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_025852, intron 1 of 14)	intron (NM_025852, intron 1 of 14)	4069.0	NM_025852	66932.0	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	3.40707427189522	3.37964912229168	3.23135121152156	3.42727205374883	3.34051283305552	3.3419347062482	3.44754026523907	3.56007254669607	0.191235952052475	0.708362684375389	0.882836313054276
Merged-chr1-58712686-4	chr1	58712613	58712813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009805)	promoter-TSS (NM_009805)	-573.0	NM_207653	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	7.74619569272181	8.57062104592677	7.69725945889549	7.66306213539586	8.07766218764577	8.06490159031724	8.1471826293807	7.50842072712989	-0.00902342477978476	0.971771655505947	0.989737326894157
Merged-chr1-74505924-4	chr1	74505823	74506023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310662)	promoter-TSS (NM_001310662)	-102.0	NM_001310662	319651.0	Mm.66568	NM_176972	ENSMUSG00000033364	Usp37	4932415L06Rik|C330008N13Rik	ubiquitin specific peptidase 37	protein-coding	8.71111419139421	8.68764894870625	8.41322593717845	8.41960902385581	8.52940170969304	8.53117512467849	8.56008058361384	8.46454722067573	-0.0506732902467437	0.74757977061322	0.900630985096871
Merged-chr15-84896400-3	chr15	84896308	84896508	+	879.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44C|LTR|ERVK	-27020.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	3.57313574623469	3.51651353559935	3.47160078724765	3.55043803138245	3.34893780496845	3.47429948025661	3.34817527898806	2.95735656869945	-0.819219576342582	0.139138009447595	0.414762726127413
Merged-chr18-62225230-4	chr18	62225133	62225333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45133.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	5.93327521231485	6.02768304766638	6.01962950573098	6.16368947725646	5.81338811615966	5.84188368517506	5.74032057607291	5.54679410458124	-0.49096285848278	0.0485198843534851	0.227329966324165
Merged-chr19-56731700-4	chr19	56731617	56731817	+	790.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9345.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	4.34716757566742	4.38786710801592	4.30748267394546	4.0873346596653	4.15765181161679	4.34970211816152	3.67562000684328	3.86991545260067	-0.614840293628762	0.173098591599641	0.467022388426611
Merged-chr5-62821011-4	chr5	62820907	62821107	+	885.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 2 of 8)	intron (NM_001170705, intron 2 of 8)	7184.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	4.46305363074816	4.64915263455463	4.54234046640902	4.40596613705743	4.34459078657334	4.26913654184804	4.36036833145087	4.19158196576202	-0.510595294314078	0.175854119400042	0.470674601969451
Merged-chr10-81404924-4	chr10	81404729	81404929	+	979.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008688, exon 8 of 10)	exon (NM_008688, exon 8 of 10)	-4746.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	4.02053083167607	3.95359045431532	4.41121760497703	4.49643568745687	3.76499407837996	3.98198956648946	4.27418486092304	4.11619031023138	-0.539367775439816	0.23589981505233	0.545896142740888
Merged-chr6-17640952-4	chr6	17640861	17641061	+	860.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 1 of 9)	intron (NM_007604, intron 1 of 9)	3951.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	3.70697605794849	3.82249802053773	3.97928128819959	3.88310596847272	4.04018263444013	3.7657164460835	4.33726037159309	4.3555144942229	0.779123626879385	0.0816734195002864	0.310132426066198
Merged-chr17-27910896-4	chr17	27910839	27911039	+	941.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	B4A|SINE|B4	1633.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	3.99546716394465	4.30804510200985	3.99602991435153	3.91442373836948	4.16978581337069	4.31786099802136	4.21683056786032	4.43477215067353	0.578169767081287	0.156882390195943	0.443036367853879
Merged-chr4-140714012-4	chr4	140713902	140714102	+	881.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173867, intron 7 of 12)	intron (NM_173867, intron 7 of 12)	12529.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	4.21710030371759	4.23312543347248	4.42440449739198	4.40386406562791	4.2385063891231	3.85482930317774	4.0585499597066	4.25921119491575	-0.517471779508098	0.209169585181314	0.513577117801228
Merged-chr17-71301019-4	chr17	71300910	71301110	+	981.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	10001.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	5.14727953319367	5.14309233448039	5.14816009643908	5.0109202323735	4.70408756518705	5.01474784703839	4.81607146568291	5.04972144173179	-0.418916719854717	0.188667301805313	0.487393382760513
Merged-chr19-45037067-3	chr19	45036973	45037173	+	836.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001195265, exon 7 of 16)	exon (NM_001195265, exon 7 of 16)	8699.0	NM_001195265	100503041.0	Mm.329877	NM_177605	ENSMUSG00000074818	Pdzd7	9130207N01|EG435601|Pdzk7	PDZ domain containing 7	protein-coding	3.27846818804595	3.22374121929727	3.55260477389384	3.35114614632969	3.26496606255729	3.26256812985184	3.67519071575088	3.39358226354141	0.183216892948613	0.731212663896381	0.893500186922378
Merged-chr15-8512045-4	chr15	8511944	8512144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-67581.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	5.52791592254031	5.43996762926385	5.7319993822713	5.85434919931591	5.31450422519345	5.25229871119915	5.67931181686392	5.70427769333971	-0.274599902454229	0.348479333347317	0.656238106962862
Merged-chr4-24865013-3	chr4	24864913	24865113	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-13889.0	NM_001033531	212390.0	Mm.409581	NM_001033531	ENSMUSG00000040387	Klhl32	6430524H05Rik|D4Ertd389e|Gm1356|mKIAA1900	kelch-like 32	protein-coding	3.86411511764769	4.47233178114801	4.46013418470571	4.83489398416143	3.86150119870179	4.04613350440993	3.6661935894953	3.91916997195312	-1.52271806942824	0.00164094415599416	0.0200550762499156
Merged-chr2-27418693-4	chr2	27418587	27418787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	8921.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	6.57646563964117	6.62883250477976	6.60873010179029	6.63543242092302	6.54951991143753	6.51234816390458	6.60521455236229	6.1681399859841	-0.20531453496866	0.34107983773399	0.650197428160039
Merged-chr11-85164223-2	chr11	85164123	85164323	+	707.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD3|LINE|L1	-6873.0	NM_028589	73634.0	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	3.14587789011669	3.39005632903988	3.00998363950647	2.94532997707798	3.77539399733675	3.32316759586307	3.47181638483996	3.20795392220424	1.22474827872437	0.033022300014928	0.178298877882349
Merged-chr11-105927210-3	chr11	105927120	105927320	+	784.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_181071, exon 26 of 26)	3' UTR (NM_181071, exon 26 of 26)	17267.0	NM_007805	13056.0	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	3.25789284450155	3.23435432517527	3.31438932583013	2.69075715407254	3.47658869759649	3.18754634319348	3.50042960923148	2.860468179185	0.4864569468427	0.459067943892383	0.74170765693035
Merged-chr16-57606813-4	chr16	57606714	57606914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025599)	promoter-TSS (NM_025599)	53.0	NM_025599	66497.0	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	5.74835694533267	5.86912450012486	5.46272958390207	5.83441084005075	6.21531215821782	6.17873316173996	6.09313540667145	5.79562883114855	0.535056750358102	0.0391050907514563	0.198804460724084
Merged-chr6-35177488-4	chr6	35177404	35177604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027513)	promoter-TSS (NM_027513)	-112.0	NM_027513	70699.0	Mm.261208	NM_027513	ENSMUSG00000038759	Nup205	3830404O05Rik|AV248391|mKIAA0225	nucleoporin 205	protein-coding	6.30641328228219	6.77805326236739	7.16145866285686	6.51369475016497	6.3454172546813	6.63331638316137	6.50753747708594	6.32256965712682	-0.390614751017354	0.128478169975445	0.39883649813705
Merged-chr4-102656731-4	chr4	102656623	102656823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66880.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	5.41529499924536	5.47109519037456	5.89947987136576	5.36940364047586	5.75775143759267	5.28657472815922	5.91046113056947	6.01579780210621	0.379765537353122	0.209704216124439	0.514193957749885
Merged-chr9-21431199-3	chr9	21431102	21431302	+	901.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 1 of 19)	(TC)n|Simple_repeat|Simple_repeat	6294.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	3.57399191970529	3.7218234817343	3.73600413568615	3.766216073629	3.60401596980659	3.56928167259984	3.90617905689397	3.73385298597396	0.00371411820248344	0.993678419719887	0.997702270136287
Merged-chr16-32914217-4	chr16	32914082	32914282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310674)	promoter-TSS (NM_001310674)	82.0	NM_001310672	70144.0	Mm.491178	NM_001081255	ENSMUSG00000022801	Lrch3	2210409B11Rik|AW215594|Gm1742	leucine-rich repeats and calponin homology (CH) domain containing 3	protein-coding	6.49801436342219	6.47554887489189	6.51438592998742	6.29256897308271	6.02551655449376	6.15208534204216	5.57149097843508	5.82264939653796	-0.809046963091231	0.00120913058918719	0.0156538206998463
Merged-chr9-99158316-4	chr9	99158212	99158412	+	905.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18101.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	4.36450489078666	4.41693034329757	4.31798096448109	5.07241425684518	4.68552566438277	4.29267960112973	4.43467059361028	4.65139008250303	-0.169265672494286	0.691947706782444	0.87467626526963
Merged-chr15-80798026-4	chr15	80797923	80798123	+	784.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177124)	promoter-TSS (NM_177124)	-587.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	4.04387855046535	4.08619153924533	4.09275524163657	3.9602043753016	4.14563372843775	4.62656873055108	3.69753477479848	4.04205040708413	0.320436881777724	0.484754724009365	0.758861319634076
Merged-chr11-110431676-3	chr11	110431576	110431776	+	926.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	MIRb|SINE|MIR	32574.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	4.09143605005414	4.22704203068771	3.64138701251471	3.52235478083565	4.44485059818778	4.3123630277439	4.4051168148772	4.04089211907187	1.07066938454758	0.0227147671275449	0.139241231411416
Merged-chr3-10087676-3	chr3	10087607	10087807	+	795.955566	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045710)	promoter-TSS (NR_045710)	-570.0	NR_045710	100041480.0	Mm.455632	NR_045710	ENSMUSG00000049230	Gm9833	-	myelin basic protein expression factor 2, repressor pseudogene	pseudo	2.59215744753931	2.53065448551595	2.59238367465437	2.18991820822775	3.7147600943972	3.35019691993444	3.3200203187697	3.57226956160108	7.42229690946248	1.22198246499675e-13	1.56576927888705e-11
Merged-chr8-107478143-4	chr8	107478030	107478230	+	990.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025830, intron 4 of 23)	intron (NM_025830, intron 4 of 23)	41732.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	5.21520187712381	4.97718196868169	4.75577897064612	5.48481727868866	5.14546889209885	4.97570327135776	4.9292098283984	5.15168417542466	-0.191100720230649	0.57822537623372	0.81458069221668
Merged-chr11-58978062-5	chr11	58977910	58978110	+	904.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290988)	promoter-TSS (NM_001290988)	-83.0	NM_001290988	94091.0	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	5.03776873689991	4.04086693827515	4.65178755739739	5.02248510025698	4.25713057996228	4.7483591467278	3.83191822695011	4.57093783253695	-0.77381605649916	0.117827530890464	0.379735842671936
Merged-chr14-19986219-4	chr14	19986124	19986324	+	893.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8975.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	4.58226054975153	4.34825369704158	4.05667786898823	4.62429267780807	4.31487741604692	4.23496701798152	4.23860150920201	4.3865298561878	-0.328487202928608	0.414470844987165	0.709044594374843
Merged-chr6-15846160-4	chr6	15846070	15846270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A_|LTR|ERVL	125509.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	7.93292749656281	7.9647899618401	8.29486317119762	8.24660403595763	8.16496086621513	8.2307384441288	8.44856853507532	8.06756643079662	0.141793754894893	0.427283156638221	0.718470808777302
Merged-chr12-101075188-5	chr12	101075064	101075264	+	879.76001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160214, intron 1 of 14)	intron (NM_001160214, intron 1 of 14)	-7287.0	NR_038048	319760.0	Mm.440198	NM_176997	ENSMUSG00000097121	D130020L05Rik	9430007L23Rik	RIKEN cDNA D130020L05 gene	ncRNA	2.86549256923047	3.32576406182139	3.14154712637943	2.80647011224815	3.26378168386434	3.43253242849583	3.24781453765094	3.46865764380293	1.17419908479295	0.0456451047489952	0.218980525634487
Merged-chr4-123917323-4	chr4	123917180	123917380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017475)	promoter-TSS (NM_017475)	-153.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	7.83781481390337	7.65128905883388	7.72094683832839	7.70192727508213	8.01018007278448	8.060854972909	7.88105420192166	7.9890785881441	0.337865669660029	0.0352552942622978	0.18617379555576
Merged-chr11-100571257-4	chr11	100571156	100571356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 11 of 11)	intron (NM_028918, intron 11 of 11)	-3683.0	NM_009923	12799.0	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	5.99679571789825	5.51065536578455	5.55256628872917	5.53108207933577	5.60965788966153	5.86044961448236	5.55230138915144	5.84738616201916	0.110163057621285	0.692335228908591	0.874855389914335
Merged-chr10-98881708-4	chr10	98881618	98881818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-32924.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	7.6080133155285	7.34007396048735	7.04201149385908	7.51116243269246	7.13468520203921	7.0578524888396	6.91683746529666	7.23512590340816	-0.416096252307444	0.0434694627696569	0.212131565735569
Merged-chr10-69275495-3	chr10	69275387	69275587	+	788.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 8 of 11)	intron (NM_001252638, intron 8 of 11)	62293.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	3.82355964422501	3.41651022895571	4.34486130788545	4.08467930591206	3.69711222258417	3.89112638716502	3.80846963157875	4.19118841494195	-0.146098997563613	0.779064107348454	0.913829539187166
Merged-chr14-46848395-2	chr14	46848289	46848489	+	848.5	f0_balb.idr|f1_balb.idr	intron (NM_026832, intron 4 of 5)	intron (NM_026832, intron 4 of 5)	16255.0	NM_001360455	68755.0	Mm.343809	NM_026832	ENSMUSG00000055128	Cgrrf1	1110038G02Rik|1810009H17Rik|CGR19	cell growth regulator with ring finger domain 1	protein-coding	3.29731307156135	3.11832488502983	3.62185116806646	3.64382241129386	2.71551191426898	2.73526011473111	2.85552404112331	2.787801821044	-3.32294435412518	1.91816568057726e-05	0.000490068610832048
Merged-chr10-37337508-4	chr10	37337413	37337613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-198587.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	7.16767149149995	7.36479619165592	7.14588097334151	7.10213468422094	7.34055926107461	7.41232190403308	7.25215637848904	6.92606750579506	0.0697946739681171	0.724834564450919	0.890501742635138
Merged-chr17-24686710-2	chr17	24686610	24686810	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011522, intron 2 of 3)	intron (NM_011522, intron 2 of 3)	3239.0	NM_011522	20974.0	Mm.26032	NM_011522	ENSMUSG00000007021	Syngr3	-	synaptogyrin 3	protein-coding	2.90604393923696	3.04090413102398	2.83531090820679	2.74833130419206	3.07557668910202	3.3840674483213	3.44623886020255	3.03674772285598	1.47865383652707	0.0124520531264087	0.0921992192587966
Merged-chr19-5810481-4	chr19	5810383	5810583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CTTG)n|Simple_repeat|Simple_repeat	-7811.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	7.85097848004686	7.86838295094097	7.98466667543685	7.94935705234545	7.80345714634638	7.78722056903626	7.44115210379834	7.61334459597087	-0.316216839119313	0.067446472292406	0.277148854133539
Merged-chr13-86018769-3	chr13	86018661	86018861	+	756.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28034.0	NM_007749	12867.0	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	4.34462666190243	4.28630171459564	3.84784988837227	4.43019282282389	3.41190932812649	3.33359860905102	3.28225908351902	3.36428106006208	-2.99939317863207	2.39334968072382e-07	9.45898039557139e-06
Merged-chr11-11785742-4	chr11	11785638	11785838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23224.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	6.2262155229157	5.91382486158039	6.27939723294329	6.21430014696725	5.59068445914053	5.74567740078016	5.85240080683343	5.59176804190759	-0.756193002333895	0.0027689845552765	0.0300081534196142
Merged-chr11-19019776-5	chr11	19019726	19019926	+	903.5599980000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001193271)	promoter-TSS (NM_001193271)	-857.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	4.50375243123819	4.2771399205591	4.90861068765673	4.80800750678971	4.54063101700825	4.67913333244731	4.75313235392291	4.45769901073162	-0.0970407414986808	0.798409613104097	0.922041013241446
Merged-chr13-99288092-4	chr13	99287976	99288176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56602.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	5.37328817880421	5.27036677525566	5.78594931660959	5.66292987914254	6.08912751013195	5.86333054298294	5.6845618214089	5.78182518153308	0.537647570794637	0.055808283214088	0.247315265278021
Merged-chr3-89449687-4	chr3	89449595	89449795	+	859.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_146131, exon 11 of 11)	3' UTR (NM_146131, exon 11 of 11)	-4846.0	NM_001310640	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	4.00979708965715	3.718710677566	3.51957556953958	3.89484480860818	4.00526075966867	4.13366623421237	4.0367365313876	3.81231222587904	0.545149754675614	0.23278488655286	0.542458518249992
Merged-chr17-31011607-2	chr17	31011472	31011672	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177465)	TTS (NM_177465)	-46122.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	2.51988968700531	2.24937888327288	2.5887779585884	2.42949730490952	2.46273080340955	2.94402985952407	2.64399918262974	2.77393316156494	1.34969699450552	0.0597830790686771	0.257850074836658
Merged-chr5-105528232-3	chr5	105528168	105528368	+	965.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 1 of 3)	intron (NM_133897, intron 1 of 3)	8797.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	4.07653434440502	4.00082927286118	4.03590278475145	4.41264238431824	3.45265410600363	3.21284691755342	3.45182460959033	3.17635533531623	-2.7235817949335	3.56471765654446e-06	0.000109746123734939
Merged-chr1-6406586-4	chr1	6406478	6406678	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47247.0	NM_001195732	620393.0	Mm.388992	NM_001195732	ENSMUSG00000087247	Alkal1	EG620393|Fam150a	ALK and LTK ligand 1	protein-coding	5.60164415368891	5.61018732943873	5.12446326674434	5.80310864565543	5.43668279234226	5.23006077804403	5.54925933555701	5.12101934655002	-0.390499080627868	0.209404856114986	0.513940748725158
Merged-chr3-121629480-4	chr3	121629374	121629574	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14011.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	4.04192522352637	4.14307777591178	4.04252859420812	3.86183092193452	4.14258015943577	3.78423176432111	4.07044632220501	3.99254336914275	-0.0141433143726853	0.973818927385698	0.990599589807354
Merged-chr12-80760667-4	chr12	80760558	80760758	+	789.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008423)	promoter-TSS (NM_001008423)	57.0	NM_001008423	380768.0	Mm.29367	NM_001008423	ENSMUSG00000062961	Ccdc177	Gm1568	coiled-coil domain containing 177	protein-coding	3.85846808334235	3.87983041630104	4.0028298505228	3.79623692263456	3.95189499924389	4.12573292173469	3.79195185292049	3.63665460792579	0.027334415154284	0.9515997498093	0.982792981377963
Merged-chr7-123205528-3	chr7	123205428	123205628	+	853.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9338.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	3.79993787575511	3.32454855236832	3.44428126151701	3.286966133978	3.59791084807812	3.49999883762905	3.37217420447455	3.84159679205355	0.388266098026966	0.461090494004645	0.742936442248204
Merged-chr2-117052570-2	chr2	117052470	117052670	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER3D-int|LTR|ERVK	-68501.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	2.9555093484068	3.35136582667351	3.9004577819183	3.14899222551747	3.38797045606818	3.48718853310894	3.75859060084234	3.36823774524154	0.403270836397574	0.513795510507777	0.776645302351569
Merged-chr17-83335360-4	chr17	83335259	83335459	+	931.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15572.0	NM_001114361	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	4.52826942148282	4.8186126661581	4.99426143732477	4.72836109474957	4.40671497310097	4.57078632179613	4.46503393493839	4.76195707965832	-0.483719697919668	0.180843643329711	0.477227957163292
Merged-chr19-46396837-4	chr19	46396736	46396936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015752)	promoter-TSS (NM_015752)	-60.0	NM_001025391	24069.0	Mm.41210	NM_015752	ENSMUSG00000025231	Sufu	Su(fu)	SUFU negative regulator of hedgehog signaling	protein-coding	7.60174496709288	7.88198412517848	7.38184950902886	7.62501817225696	7.80775558814546	7.76265436259838	7.73023468373114	7.71550192704864	0.154299279732975	0.391192878047008	0.691035696926048
Merged-chr8-33698316-2	chr8	33698227	33698427	+	679.25	f0_c57.idr|f1_c57bl6.idr	TTS (NM_010344)	TTS (NM_010344)	-33587.0	NM_001167921	68153.0	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	2.68907818889222	2.54595819819941	2.60543499796536	2.38469451898946	3.48026061206287	3.0348801353244	3.32128691952801	3.86658749978525	4.57341793651228	3.30566672373739e-09	1.92706021071993e-07
Merged-chr1-59613984-4	chr1	59613890	59614090	+	991.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013771, intron 13 of 19)	intron (NM_001013771, intron 13 of 19)	56844.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	5.24535843700964	5.29753876128851	4.82756365266767	5.00203201401303	5.04579949429138	5.38860211427247	5.12841302727048	5.18175573076459	0.155617537976587	0.621277487124693	0.837757076551181
Merged-chr3-95519094-4	chr3	95518982	95519182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-7704.0	NM_021281	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	6.46559296778327	6.53522746196207	6.27171328907589	6.28442441321212	6.39556514772468	6.40911930388319	6.07708691035613	6.35957802992322	-0.103535051369404	0.648177910172118	0.852019592695027
Merged-chr6-124907965-4	chr6	124907863	124908063	+	950.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008479, intron 5 of 7)	intron (NM_008479, intron 5 of 7)	3742.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	4.65420555748936	4.44302447482282	4.23731398053999	3.70391033743857	5.4663172590409	5.42027883286086	4.27132223551361	4.52659096069874	1.49592498155133	0.0022134918799571	0.0252814728054343
Merged-chr4-128734384-3	chr4	128734289	128734489	+	878.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	6818.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	3.80685175262334	3.51558083611319	4.20174447722495	4.17233842593153	3.53958716159092	3.43256040375201	3.68576080217872	4.08094379217312	-0.718643596420963	0.180663092432032	0.47704412057244
Merged-chr9-77919336-3	chr9	77919235	77919435	+	950.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 1 of 7)	(TG)n|Simple_repeat|Simple_repeat	1970.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	4.24463178191902	3.91146201682538	4.12098560159088	4.1818032843592	3.89386214554191	3.89238512998628	3.7582812383731	3.93120026158425	-0.690002466286837	0.111135699945772	0.368307372184414
Merged-chr12-113075249-4	chr12	113075142	113075342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291444)	TTS (NM_001291444)	740.0	NM_001361920	75671.0	Mm.23377	NM_029381	ENSMUSG00000012211	Tex22	1700028O09Rik|AV210422|Tep22	testis expressed gene 22	protein-coding	6.36332184676824	6.41456090463129	5.94033578262305	6.27956220874203	6.34903602946775	6.04478672323351	6.31467103812528	5.91192421907587	-0.134559053616431	0.590091463037349	0.820738632318576
Merged-chr19-10266641-4	chr19	10266528	10266728	+	961.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 5 of 19)	intron (NM_198114, intron 5 of 19)	-25880.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	4.79704987212859	4.55305997401437	4.29229744679011	4.85969704354343	4.75021155316961	4.56891229806861	4.77478417368175	4.64735338153673	0.0670012842360015	0.855660374485881	0.945715901857588
Merged-chr13-95038445-4	chr13	95038356	95038556	+	988.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172263, intron 15 of 19)	L1MA4|LINE|L1	62112.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	5.93625142832717	4.90314814003391	5.74480791033446	5.83808485900104	5.59156014364794	5.66486660052995	5.31266838436211	5.30324809351656	-0.316857159329602	0.352608312700078	0.659679630621423
Merged-chr13-44272012-1	chr13	44271912	44272112	+	631.0	f0_balb.idr	Intergenic	RMER5|LTR|ERV1	-55525.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	2.00780531814877	2.17989587519835	2.07213147675215	1.56038394214961	1.6147750080177	1.73468440438348	1.6295864293418	1.7156135723621	-2.88232758207439	0.0140072788152243	0.100032517185597
Merged-chr2-32647464-3	chr2	32647371	32647571	+	955.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146348, intron 1 of 14)	intron (NM_001146348, intron 1 of 14)	876.0	NM_001146348	13805.0	Mm.225297	NM_007932	ENSMUSG00000026814	Eng	AI528660|AI662476|CD105|Endo|S-endoglin	endoglin	protein-coding	3.94029210602344	4.10660366792482	4.40571758625349	4.43454345808301	3.62570961343886	3.71273956445573	3.97382566597793	3.83257842877464	-1.27082965580962	0.00595478355105657	0.0539737092042093
Merged-chr4-133494622-4	chr4	133494528	133494728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081156, intron 1 of 1)	intron (NM_001081156, intron 1 of 1)	3922.0	NM_001081156	69539.0	Mm.151594	NM_001081156	ENSMUSG00000056596	Trnp1	2300002D11Rik|Trnp	TMF1-regulated nuclear protein 1	protein-coding	5.58559535969962	5.95143015781063	5.2199361241344	5.03851581465596	5.80596240097557	5.9786361417094	5.6099148946508	5.38176487945653	0.375456045167678	0.264460908250521	0.576455127446606
Merged-chr6-120150715-4	chr6	120150618	120150818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-43105.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	6.8198993124273	6.59445672404219	7.07917979397574	6.97067523946135	5.89644902846894	6.43293407411155	6.07117028821007	6.40334514123371	-0.983264855881407	5.54602923411879e-05	0.00123749471741486
Merged-chr15-101268078-2	chr15	101267978	101268178	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010444, intron 1 of 6)	intron (NM_010444, intron 1 of 6)	1232.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	4.9600844594571	5.87089367672887	4.919467323366	3.92441692021809	6.16631884835345	6.67355031233711	4.80860434170456	4.95744315745331	1.23710587156206	0.170842558947733	0.464014859975631
Merged-chr15-25764948-3	chr15	25764879	25765079	+	888.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001353142, intron 1 of 20)	intron (NM_001353142, intron 1 of 20)	-9034.0	NM_001353141	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	2.74616591241569	2.75659926136651	2.74650759260588	2.96547840720357	2.51999705356297	2.78900397862991	2.47121547934458	2.54864904669155	-1.18572450201919	0.0874669265949912	0.322506294142222
Merged-chr4-155959489-4	chr4	155959411	155959611	+	861.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001039157)	TTS (NM_001039157)	-2801.0	NM_026125	67389.0	Mm.29140	NM_026125	ENSMUSG00000023571	C1qtnf12	1110035L05Rik|C1qdc2|CTRP12|Fam132a|alipolin	C1q and tumor necrosis factor related 12	protein-coding	4.53464314756823	4.42911563413906	4.34046618942857	4.43183206856789	3.96669757104974	4.07347310600519	3.98938310960727	4.37911861798812	-0.817764294230865	0.0433931094572604	0.211901628571511
Merged-chr17-57449783-3	chr17	57449711	57449911	+	885.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 16 of 22)	intron (NM_001355722, intron 16 of 22)	91125.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	2.93316235218341	3.20683962465719	2.93348025073033	2.65932226476218	3.37964141424169	3.17648978571585	3.32873092020905	3.12352472306813	1.28254921091093	0.034522902684586	0.183833746553912
Merged-chr11-79224682-4	chr11	79224588	79224788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18336.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	5.7578910241045	5.98689306645735	5.54768039542657	5.29093841861188	5.793932591156	5.75284894844223	5.82271698921701	5.95642725362075	0.289883584988057	0.310737663209358	0.622831609866492
Merged-chr1-173737871-4	chr1	173737756	173737956	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204910, intron 1 of 7)	intron (NM_001204910, intron 1 of 7)	3953.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	5.23263146143119	5.11981879003164	4.60566352209178	4.75745100177791	5.10405792159209	5.28409868676639	5.31808086693	5.00723513281152	0.454409020089774	0.175600466646378	0.470349424829629
Merged-chr10-43833065-4	chr10	43832987	43833187	+	897.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131055, exon 3 of 3)	non-coding (NR_131055, exon 3 of 3)	7180.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	4.10055518822699	4.27131319320701	4.57515214937693	4.37957863013247	4.43258036201625	4.05857130808749	4.44165132129234	4.41960508595334	0.0205103938347453	0.959009803355518	0.985353640409989
Merged-chr4-70546371-4	chr4	70546279	70546479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-11451.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	5.16128958209914	5.19358997250255	5.50087426887903	5.75395966050753	5.38385139511718	5.64717668968462	5.26983263031778	5.60063155967591	0.0583522982795228	0.852037328472248	0.94421936565126
Merged-chr9-61948209-4	chr9	61948124	61948324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1425.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	5.49130002779116	6.05119234310316	5.19535461934655	5.35373699405011	5.95333566022075	5.80756738632646	5.96585705348168	5.60116932643789	0.461282035487234	0.136202962816977	0.410658011622976
Merged-chr1-54913055-2	chr1	54912955	54913155	+	963.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	13332.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	3.28454720743055	3.33554026343139	3.23038039072596	2.95160308334771	3.20561630431538	3.09447908478569	3.16142485328527	2.98411412143784	-0.324459885616047	0.575330361532369	0.812964084003584
Merged-chr14-65884982-1	chr14	65884882	65885082	+	763.666687	f0_c57.idr	Intergenic	Intergenic	47680.0	NM_145944	67179.0	Mm.214576	NM_145944	ENSMUSG00000022035	Ccdc25	2610528H13Rik|NSrp70	coiled-coil domain containing 25	protein-coding	2.92062970153776	3.03470903119451	2.84151943274066	2.91693092305634	3.80222082987676	3.60584439491131	3.70054112314794	3.37729845288709	2.6149809688269	8.9060834566571e-06	0.000248306351101213
Merged-chr16-93835343-3	chr16	93835244	93835444	+	870.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045529, intron 1 of 16)	intron (NM_001045529, intron 1 of 16)	3223.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	3.33089824625616	3.1650888811237	3.00321149679111	3.38413140058662	3.74658609196094	3.38467192196676	3.318903999219	3.5912591956157	0.987488745535731	0.0777920942129724	0.301651234335265
Merged-chr10-99354093-4	chr10	99353976	99354176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90845.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	6.57309692424001	6.49565351964744	6.7907846982053	6.46805803106721	6.67682870701225	6.11202838028049	6.6314132719333	6.45415877980445	-0.120779085896523	0.605196541397141	0.828712118276045
Merged-chr5-99364679-3	chr5	99364567	99364767	+	960.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-111740.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.31069624071837	3.89435257906556	4.19047786592377	4.41805481012619	3.77327061496741	3.66471730273912	3.99167696526027	4.0063490419453	-0.976454082113186	0.0318667831737565	0.174238311637134
Merged-chr4-102625154-4	chr4	102625034	102625234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35291.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	8.36430598900657	8.46674220480612	8.63290193139394	8.41000434034782	8.2397848076086	8.4992828945352	8.69795455813828	8.23494950805361	-0.0515265688324491	0.769328668726641	0.909742530773464
Merged-chr11-46817917-4	chr11	46817817	46818017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 3 of 8)	intron (NM_178759, intron 3 of 8)	7118.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	6.64591920908592	6.65729196103586	7.14138653295945	7.11016725780368	6.90928366773195	6.52948333016999	6.43029576845238	6.20090847005643	-0.512859069405849	0.0456383004994278	0.218974626980032
Merged-chr3-127299595-4	chr3	127299494	127299694	+	978.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	109464.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	5.30412326341253	4.9151056942692	5.27498518174929	5.57241698905541	5.26836279142379	5.02698643858042	5.08826254208945	5.63747389619017	-0.0396425574401446	0.906170761565374	0.965212549756255
Merged-chr10-80039828-4	chr10	80039719	80039919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025554)	promoter-TSS (NM_025554)	-160.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	8.09108249964827	8.29953931085005	7.98601126211113	7.86289916260057	8.10104733313831	8.28272153891667	8.20352165901344	7.84135922039109	0.0651379613727675	0.724097727959224	0.889995893326131
Merged-chr8-66393084-4	chr8	66392958	66393158	+	943.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 5 of 7)	intron (NM_175188, intron 5 of 7)	6757.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	4.38771876280197	4.43031568450769	5.14973192985846	4.96774138345397	4.39080810686439	4.21186990463802	4.27565911542789	4.13714201517323	-1.17590374534457	0.00526982281015919	0.049452962136364
Merged-chr11-60106171-11	chr11	60106066	60106266	+	948.7727050000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009021, intron 1 of 5)	CpG	1153.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	4.06551185992126	4.54424431849544	4.31260679430021	4.30438241047081	4.61404429253134	4.52858625383767	4.15286136961329	4.39666021233233	0.281948616177052	0.478500082634742	0.754539475439383
Merged-chr4-150349864-4	chr4	150349713	150349913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	(TCC)n|Simple_repeat|Simple_repeat	67897.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	6.34024668172656	6.21981591889397	5.71823517856595	6.27567793320897	6.06069842972853	6.21156616963067	5.79510107549474	6.11508272003848	-0.178257954750397	0.493799342425722	0.764500588386318
Merged-chr6-145121770-4	chr6	145121661	145121861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008511)	promoter-TSS (NM_008511)	22.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	7.82820725256558	7.75821799924545	8.07380217724517	7.73154989531965	7.81989187281378	7.79438480453726	7.93985273679896	7.58545360032439	-0.074333353738707	0.677579138918805	0.867764888703673
Merged-chr3-95281832-4	chr3	95281727	95281927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173347, exon 1 of 8)	5' UTR (NM_173347, exon 1 of 8)	249.0	NM_173347	229589.0	Mm.14155	NM_173347	ENSMUSG00000015711	Prune1	9230112O05Rik|C130058A12|DRES-17|HTCD37|PRUNEM1|Prune|Prune-M1	prune exopolyphosphatase	protein-coding	7.62105105887711	7.32847422933256	6.80897333228406	7.30474164592733	7.34423518881447	7.55936537666252	7.35550987411988	7.08043844014708	0.0624852252095625	0.7817534502438	0.915080578622783
Merged-chr14-69141062-4	chr14	69140958	69141158	+	984.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30744.0	NM_010920	18092.0	Mm.390691	NM_010920	ENSMUSG00000044186	Nkx2-6	AV044928|Nkx-2.6|Nkx2.6|Tix|tinman	NK2 homeobox 6	protein-coding	4.40219888811803	4.40160423933843	5.68544289340063	4.7863392755948	5.00616908562731	5.05606538932541	4.78235856141417	4.84020378726901	-0.0134578197096848	0.975898160991838	0.991400325425142
Merged-chr10-67285400-4	chr10	67285283	67285483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001036293)	promoter-TSS (NM_001036293)	-102.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	8.07484521879442	8.20615867890823	7.96871684221103	7.85398614354975	8.31165849938156	8.25984628395271	7.93759709761231	7.93509053776286	0.126815685685719	0.487116180120353	0.760577292750831
Merged-chr1-155224366-4	chr1	155224271	155224471	+	940.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65668.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	4.70153431928901	5.06840979136915	4.93101231741994	4.98148622472286	4.63346784256115	4.91984047541672	5.38888585172544	4.56802693717255	-0.0299789668611651	0.935782993944091	0.976672645140639
Merged-chr1-86504307-4	chr1	86504163	86504363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-22294.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	7.52360487338307	7.52585380880774	7.36305309354089	7.47165149054692	7.30796547893444	7.48842213057632	7.60653811209551	7.03535867783152	-0.131294988368231	0.500110022507409	0.768714895599853
Merged-chr5-151190272-4	chr5	151190190	151190390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163493)	promoter-TSS (NM_001163493)	-97.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	6.19053419123917	5.83739129446439	6.19163233275698	6.53447191464692	6.33075866818303	6.26315629917388	7.03372521703587	6.41197726908343	0.479045981610346	0.0939337645702328	0.335277877261288
Merged-chr12-112724224-4	chr12	112724113	112724313	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024602, intron 1 of 18)	MER45A|DNA|hAT-Tip100	2039.0	NM_001024602	217882.0	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	5.10365731912366	5.29358240072476	5.1671733349116	4.63847953529529	4.96837150795479	5.10827791617839	4.98009825787682	5.06852587904957	-0.0516008306153285	0.879572615126969	0.95491185809843
Merged-chr18-58659442-4	chr18	58659370	58659570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025478)	promoter-TSS (NM_025478)	-12.0	NM_025478	66307.0	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	6.18784905647453	6.0453163105431	5.60245480469485	6.18218552563402	5.88041767683926	5.86767983435774	6.48350009371292	5.88994834629161	0.0372603505033956	0.896181522771225	0.961015180097519
Merged-chr3-95523955-4	chr3	95523863	95524063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2823.0	NM_021281	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	6.76733447385019	6.94793858144634	6.87750780366596	7.06864502979081	6.53907864209909	6.52950971629918	6.63087906380684	6.70545938951826	-0.471390598494376	0.0204151222382352	0.129773415146667
Merged-chr17-24936555-2	chr17	24936455	24936655	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163447, exon 1 of 32)	exon (NM_001163447, exon 1 of 32)	422.0	NM_001163448	30957.0	Mm.43081	NM_013931	ENSMUSG00000024163	Mapk8ip3	BB120594|D17Wsu15e|JIP-3|JSAP1|JSAP1a|JSAP1b|JSAP1c|JSAP1d|Jip3|Syd2|mKIAA1066	mitogen-activated protein kinase 8 interacting protein 3	protein-coding	3.9334038862472	4.18293983488342	4.56123223602444	3.9096460335898	4.23680162399128	4.22264773051635	4.30872573974789	4.6268067585626	0.475589699362103	0.271775811537488	0.583340283741235
Merged-chr14-50930109-1	chr14	50930009	50930209	+	1000.0	f1_balb.idr	intron (NM_001033271, intron 2 of 6)	intron (NM_001033271, intron 2 of 6)	740.0	NM_001310506	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	4.88599366727743	4.98657046701613	5.67613942136502	5.5245416940433	4.8267535303737	4.90225460235208	4.78381442111559	5.22447005828738	-0.709917327568139	0.049194393117917	0.229357942473322
Merged-chr7-4922797-4	chr7	4922681	4922881	+	937.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358882)	promoter-TSS (NM_001358882)	-99.0	NM_001358882	269854.0	Mm.42652	NM_201355	ENSMUSG00000035285	Nat14	BC047219	N-acetyltransferase 14	protein-coding	4.22643014887856	4.14888455428719	4.06708027603649	4.52195208701943	4.70175389101217	4.74833997957874	4.55606709466868	4.71924181316324	0.91184777043381	0.0202874233188321	0.129238101158064
Merged-chr5-124448032-2	chr5	124447932	124448132	+	777.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310725, intron 2 of 6)	intron (NM_001310725, intron 2 of 6)	1328.0	NM_001310727	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	2.75969126163772	3.2241299410784	2.82932864195069	2.88944626788576	2.86656539414729	3.00344366558634	2.94754726698819	3.1282266872834	0.202682068671394	0.742355688219773	0.898494026733066
Merged-chr17-80772641-4	chr17	80772524	80772724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44599.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	7.44000056652556	7.14912979880504	7.16482869080874	7.0062441526267	6.88163658604035	7.08528476722168	6.95162263432937	6.63191717533243	-0.407058801781821	0.0524938260571937	0.238736058074563
Merged-chr2-5942681-5	chr2	5942550	5942750	+	748.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081131, exon 1 of 17)	exon (NM_001081131, exon 1 of 17)	142.0	NM_001081131	209692.0	Mm.222517	NM_001081131	ENSMUSG00000025815	Dhtkd1	C330018I04Rik	dehydrogenase E1 and transketolase domain containing 1	protein-coding	3.13369617142003	3.2563635895727	3.53226063015826	3.4212191241242	3.34145543134493	3.43257527755432	3.36332024609621	3.31816612889617	0.0508554089273658	0.923228152544534	0.97158993243195
Merged-chr11-3160571-3	chr11	3160465	3160665	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 9 of 32)	MTD|LTR|ERVL-MaLR	32898.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.15587779151247	4.46697811244064	5.39718920487076	4.81713903326226	3.35822553096506	3.70144983920363	3.5552747119063	3.56627374505564	-4.55799745770587	4.86320546959043e-12	4.66520353261425e-10
Merged-chr11-58953988-3	chr11	58953848	58954048	+	825.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178218)	promoter-TSS (NM_178218)	564.0	NR_134309	382522.0	Mm.377898	NR_134309	ENSMUSG00000080712	Hist3h2bb-ps	4930534G10Rik|4933432H21|B2Hist3h2bb|Hist3h2bb|R75370	histone cluster 3, H2bb, pseudogene	pseudo	3.96068650518451	3.66742977512855	3.65050991260946	3.42604180350716	3.98338464141415	3.93719855352844	3.69301295432922	4.20820152896484	0.842776807390512	0.0771735411492666	0.300367540763609
Merged-chr19-21373517-4	chr19	21373394	21373594	+	837.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99167.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	4.98479447455359	4.93543828536876	5.2032303408787	5.03121642992663	4.48778926063015	4.67951363585539	5.23245220899465	4.94788849128647	-0.357499263554589	0.314381146047141	0.626354487695056
Merged-chr9-56962604-4	chr9	56962483	56962683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178374, intron 2 of 8)	intron (NM_178374, intron 2 of 8)	11659.0	NM_178374	66069.0	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	6.28347801942095	6.59901886835405	5.96781322582072	5.83805212080592	6.28502128353194	6.0029194076434	5.71806678757943	5.54120200379975	-0.425168836019708	0.168865816598706	0.461341589819388
Merged-chr6-113483359-4	chr6	113483244	113483444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133930)	promoter-TSS (NM_133930)	-12.0	NM_133930	171508.0	Mm.41593	NM_133930	ENSMUSG00000030284	Creld1	AI843811|i11E7	cysteine-rich with EGF-like domains 1	protein-coding	8.13714935355176	8.53575336796086	7.86794606412565	8.40803431696477	8.21585238695546	8.19167032282762	8.04909096982652	8.00171706319662	-0.191592840130574	0.32161583883248	0.633233286881578
Merged-chr2-49771249-3	chr2	49771182	49771382	+	917.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008449, exon 26 of 26)	3' UTR (NM_008449, exon 26 of 26)	-16404.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	3.92650883404884	3.81120867582869	4.06127380405664	3.78651188692528	3.62614436042109	4.00055145690202	3.81316387124677	3.66456722120364	-0.336809648102853	0.46332430149097	0.744647770407916
Merged-chr10-81544576-2	chr10	81544476	81544676	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010301, intron 1 of 6)	CpG	470.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	3.62907185371265	3.34445562593019	3.51415997910924	3.73783545032546	3.92886579031153	3.80202450867374	3.81681932638827	3.83116951830276	0.808992720407531	0.0920333638479846	0.331772236279347
Merged-chr14-118922914-3	chr14	118922849	118923049	+	789.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360413)	promoter-TSS (NM_001360413)	-158.0	NM_001360413	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	3.1413057274202	3.03921379124571	3.51077876406465	3.2388137488049	3.03659195258987	3.18951311842387	3.24574337942942	3.1401331064117	-0.347447244859847	0.540226053953757	0.792627755331034
Merged-chr9-121642678-4	chr9	121642575	121642775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011703)	promoter-TSS (NM_011703)	-41.0	NM_011703	22354.0	Mm.282007	NM_011703	ENSMUSG00000032528	Vipr1	AV071699|VIP-R1|VPAC1	vasoactive intestinal peptide receptor 1	protein-coding	5.42244823716808	5.40853701948511	5.79509678746019	5.53155393698051	5.61214719479408	5.77141842037156	5.74247766808159	5.96244742337957	0.379797688319784	0.159216078537626	0.44657923530085
Merged-chr1-134053384-4	chr1	134053292	134053492	+	845.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16138.0	NM_021355	14264.0	Mm.287146	NM_021355	ENSMUSG00000041559	Fmod	AI131919|AU041740|FM|SLRR2E	fibromodulin	protein-coding	3.84206390833223	3.92555315567625	3.78628940817229	3.92389860350333	4.47941821768301	4.26288952315146	4.11871631803351	3.78427343064605	0.838735043110258	0.0601298929093943	0.258859661751408
Merged-chr17-26090456-4	chr17	26090322	26090522	+	963.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011933)	promoter-TSS (NM_011933)	-258.0	NM_011933	26378.0	Mm.292869	NM_011933	ENSMUSG00000036775	Decr2	-	2-4-dienoyl-Coenzyme A reductase 2, peroxisomal	protein-coding	4.73173506074845	4.64818193138939	4.61997588439368	4.39357874824114	4.70559868904594	4.44044862425634	4.47626319629828	4.79905595798073	0.0636998344106053	0.860988058722195	0.94751417046935
Merged-chr15-35870513-3	chr15	35870413	35870613	+	836.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 44 of 61)	intron (NM_177151, intron 44 of 61)	67733.0	NM_053071	12864.0	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	3.9746681839259	3.85823124935338	3.97526251644082	3.87616150843008	3.76108412585797	3.89222688461837	3.9109032235251	4.01880557051564	-0.0676493035811155	0.875606718760487	0.9532510799291
Merged-chr1-91216635-4	chr1	91216531	91216731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016894, intron 2 of 2)	intron (NM_016894, intron 2 of 2)	-33673.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	6.10051180178529	6.14298477945558	6.34355609113537	6.33011611145331	6.5710891482119	6.40541931303629	6.83910734686519	6.42753061090875	0.493865970865858	0.0309618098176746	0.170905828694243
Merged-chr5-77464989-3	chr5	77464888	77465088	+	819.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131050)	promoter-TSS (NR_131050)	-500.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	3.82821292892503	3.63078448682774	4.35230802621104	3.71212423150303	3.40334391948543	3.54137173251701	3.95218027821727	3.66767613597413	-0.743292910971009	0.158811742083783	0.445989938837749
Merged-chr5-139405229-4	chr5	139405150	139405350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-1137.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	7.30165211578161	7.6748349037798	7.64083519724127	7.92739435952739	7.1267028340823	7.0032462758002	7.50969836883262	7.54171609145827	-0.465147596386076	0.0356831794095051	0.187570565481808
Merged-chr2-50642409-4	chr2	50642310	50642510	+	989.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-267274.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	5.11465014766135	5.31109769932989	5.42013987548371	5.54232355804474	5.08268225922878	5.10984997836853	5.12443471864224	5.41633478429566	-0.3355228654936	0.269939968218459	0.581750544926175
Merged-chr1-88287689-4	chr1	88287547	88287747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10068.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	5.47283805016566	5.43185608889075	5.32746966469946	5.30257400391702	5.47793574397323	5.50310012249545	5.17174467328645	5.82766277172326	0.235881527020853	0.419728024139272	0.712781243418825
Merged-chr5-68735374-4	chr5	68735261	68735461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	606348.0	NM_175519	243043.0	Mm.234821	NM_175519	ENSMUSG00000037653	Kctd8	A730087N02Rik	potassium channel tetramerisation domain containing 8	protein-coding	7.24037812543265	7.17031578960085	7.86576284507658	7.72601230293147	7.75538451504052	7.65388904477397	8.03040536876763	7.86044123495764	0.382471079298075	0.0811543136727499	0.309177322122516
Merged-chr2-173739331-4	chr2	173739231	173739431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 1 of 5)	B1F|SINE|Alu	1760.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	7.4686142571831	7.35893683925024	7.50690487293774	7.80471631408635	7.54633279205385	7.21486359852862	7.34571564500239	7.35694552271593	-0.238306180133018	0.224018236004246	0.532128184797041
Merged-chr2-165858954-4	chr2	165858828	165859028	+	993.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252585)	promoter-TSS (NM_001252585)	-755.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	4.51265765417768	4.7909898665846	4.86232898641502	4.71507363332268	4.74168102387875	4.45202235318315	4.57851149035276	5.01773305312249	-0.0173843028689446	0.961406059957093	0.986179966620764
Merged-chr19-23142091-4	chr19	23142003	23142203	+	994.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010638, exon 1 of 2)	exon (NM_010638, exon 1 of 2)	877.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	4.88424655325669	4.73269352872893	5.05235132190531	4.88462499786468	4.6469502713909	5.12640522646646	4.78870038714218	4.91701587388508	-0.0394164717175254	0.906689124376335	0.965374636270914
Merged-chr11-62221257-4	chr11	62221168	62221368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001281818, exon 15 of 15)	3' UTR (NM_001281818, exon 15 of 15)	-27716.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	5.33152575412894	5.84776733574974	5.84544072618657	5.65794476224087	5.42842432626356	5.5439161281732	6.03711289010611	5.64999644028545	-0.010765291448772	0.970883480138253	0.989540146809868
Merged-chr15-96287615-4	chr15	96287660	96287860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175251, exon 1 of 21)	exon (NM_175251, exon 1 of 21)	238.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	4.80898191527937	4.81405017899762	4.73392807418047	4.66382530931816	4.69483859315513	4.90784771140286	4.7869245988687	5.04087193791504	0.22171646528827	0.503824907396954	0.770592637321386
Merged-chr9-118925444-4	chr9	118925328	118925528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1108.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	7.25207177281777	7.01864785756907	6.5804125795594	6.70405279957015	7.0774704067472	6.99102708236853	6.86168095984643	6.78051011314342	0.0389630149266207	0.864613623493677	0.949201660556057
Merged-chr13-114818823-4	chr13	114818727	114818927	+	966.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113375, intron 1 of 5)	intron (NM_001113375, intron 1 of 5)	590.0	NM_001113374	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	5.46260920097159	5.13069120721879	5.73118441049254	5.61987217237333	5.32238120659466	5.07390772680931	4.94996934373485	5.5636986204004	-0.452740755825416	0.161757432144737	0.450749199196011
Merged-chr15-73512560-4	chr15	73512445	73512645	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081066)	promoter-TSS (NM_001081066)	-15.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	4.84371925773853	4.68588142009467	4.32077610018334	4.62660397998904	4.56221595727276	4.59273568290217	4.64567999901201	4.6645419988076	-0.0392803878234309	0.912506109916409	0.967213265196493
Merged-chr14-70994539-4	chr14	70994425	70994625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104418.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	5.78102423990059	6.00899832035777	6.23141133023975	5.71634639445779	5.25795008844802	5.57984100818639	5.52235457137245	5.33213291920497	-0.872564780880952	0.00219934268775382	0.0251642843870164
Merged-chr11-87759720-4	chr11	87759613	87759813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172449)	promoter-TSS (NM_172449)	-828.0	NM_172449	207777.0	Mm.342019	NM_172449	ENSMUSG00000034156	Tspoap1	Bzrap1|D230016K05|PRAX-1|mKIAA0612	TSPO associated protein 1	protein-coding	6.09806146034988	6.34371344321977	5.62740221544139	5.71921182804908	5.69858381238073	5.93974063381582	6.02807530308719	6.01353123425551	-0.0852094755045795	0.764109324183809	0.907519273599295
Merged-chr11-85353072-4	chr11	85352950	85353150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166642)	promoter-TSS (NM_001166642)	-114.0	NM_001166642	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	8.04622819987789	8.18111081144765	7.58636111883819	7.88588777828483	8.07899539272156	7.96131419029313	7.85942210691169	7.72992001975393	-0.0347895447439293	0.85675189672533	0.94609962078614
Merged-chr3-51276727-4	chr3	51276627	51276827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073429)	promoter-TSS (NR_073429)	-34.0	NR_073429	67746.0	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	6.02475766768402	6.17975949866948	6.13263553791208	6.12956346172472	6.26982911371948	6.22414631915171	6.21794271328336	6.2821945458527	0.198219770984443	0.370497231261665	0.674742155971089
Merged-chr7-128225361-3	chr7	128225248	128225448	+	922.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-12009.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	4.12487210555896	3.70501130004926	3.85204301154566	4.23689686306154	3.58275200617459	3.74938093976744	4.02257037282158	3.68785587303199	-0.68474441231229	0.156338017452594	0.442219656874513
Merged-chr16-23245392-4	chr16	23245244	23245444	+	857.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	19323.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	3.8892815672784	4.15705571028564	4.09223244447079	4.51210166721039	3.83608707204886	3.8347673047675	4.32553517491263	4.04210761435299	-0.456125474423786	0.32515510554729	0.636722200273751
Merged-chr10-39490434-1	chr10	39490334	39490534	+	855.0	f0_balb.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	120635.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	3.59211838734505	3.22274942625686	3.34200823824995	3.72061805591906	3.24857012513386	2.99005811592994	3.089284899955	3.22444952241647	-1.28585345307597	0.0290345888673829	0.163828122791834
Merged-chr6-34675095-4	chr6	34674996	34675196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 2 of 13)	ORR1E|LTR|ERVL-MaLR	-34348.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	6.76621924924018	6.88004018720996	6.43612381333775	6.83298974136927	6.76154223932842	7.20525454070423	6.98208611458629	6.92618787355554	0.312324943564186	0.149788453594043	0.432207030914183
Merged-chr1-170613424-4	chr1	170613325	170613525	+	835.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23576.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	4.32620576601885	4.21139140103771	4.20382815800716	3.97587921522985	4.24931286057188	3.97863649408435	4.04939586537489	3.96426807921974	-0.257224411114444	0.543232795862223	0.794367638237739
Merged-chr6-89361871-4	chr6	89361845	89362045	+	947.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 1 of 31)	CpG	668.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	4.5583811485456	4.6375818783931	4.78849866974064	5.03857108090158	4.50898889507387	4.64861157604543	4.09959664868795	4.81971044549229	-0.513929388625209	0.194440625700818	0.494889841119879
Merged-chr7-109646691-4	chr7	109646589	109646789	+	876.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie2a|DNA|hAT-Charlie	-29542.0	NM_029811	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	3.87142389084116	4.01621168499506	3.81870448601444	4.09530642578806	4.14204483779436	3.93824684648027	4.00245886846511	3.9208731960692	0.115324195989824	0.789203969653275	0.91835324030065
Merged-chr6-129275482-4	chr6	129275382	129275582	+	811.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033122)	promoter-TSS (NM_001033122)	-113.0	NM_001033122	12515.0	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	4.73867732847479	4.8123510358407	4.11928353723288	3.92717425518182	4.49393754134319	4.49138940013246	4.38374493874208	4.0068199547623	-0.211460735704971	0.650822336620969	0.853531930845514
Merged-chr6-116719116-4	chr6	116719007	116719207	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2349.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	5.10016446348004	4.6415047055024	4.92904192847348	4.91319406649812	5.12554242687329	4.8675712279902	5.50360574357934	5.19042694998639	0.554443319188124	0.0956310969615198	0.338582100421041
Merged-chr13-67831096-4	chr13	67831006	67831206	+	881.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045194)	promoter-TSS (NR_045194)	0.0	NM_001309374	102637366.0	Mm.121460	NM_001015506	ENSMUSG00000058246	Gm10037	EG328280|Rslcan24	predicted gene 10037	protein-coding	3.96993385279117	4.11669369008337	4.14508307764027	3.42894499875603	5.18685135142553	5.02455627528408	4.72782729530603	4.8485609431053	2.44551680008735	7.22891080845858e-09	3.95500878120887e-07
Merged-chr8-35159454-2	chr8	35159373	35159573	+	852.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-193783.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	3.06064784381404	3.13652990922407	3.12592665993236	3.30518050828895	3.38541386531324	3.41592333970015	3.29065013860659	3.30167257614891	0.648915811876906	0.230584519111358	0.54010980638755
Merged-chr8-75094451-2	chr8	75094351	75094551	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010442, intron 1 of 4)	B1_Mus2|SINE|Alu	833.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	5.06422733679257	5.23193530404384	4.88408240939813	4.82132401899425	5.22439290393217	5.42439467640516	5.10565440769088	4.99234349099974	0.370348033622701	0.245683850824267	0.556821334070575
Merged-chr12-85745935-4	chr12	85745834	85746034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145447)	promoter-TSS (NM_145447)	-605.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	5.85386627086842	6.18021551721001	5.32061533634859	5.72580679878403	5.67688051514281	5.93497384737756	6.05385652680637	5.65227898109886	0.0464185048965721	0.875757210206513	0.953343358207453
Merged-chr1-133130042-4	chr1	133129939	133130139	+	952.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1127.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	4.47612217881842	4.82371816671161	4.62358188924973	4.99736977104857	5.25680240847988	5.1276230961451	4.92682734190494	5.82337610126071	1.07525477203836	0.00449188473419833	0.0438945446863677
Merged-chr2-90542266-4	chr2	90542129	90542329	+	928.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	38418.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.03822625808839	4.30238069679366	3.75497876835589	3.88227615337539	4.29475493601537	4.60117925202389	3.91649796079426	4.46703912543166	0.830767886063537	0.0632380220149592	0.266884505732432
Merged-chr5-41845303-4	chr5	41845170	41845370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310601)	promoter-TSS (NM_001310601)	-955.0	NM_001081422	665775.0	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	5.34931321454931	5.63517153918068	5.66406635803602	5.67008075799899	5.76443798907518	5.42899747157852	5.90528433572211	5.6345521232301	0.178754531204789	0.514333086295412	0.776966017760127
Merged-chr4-129742917-4	chr4	129742813	129743013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045036)	promoter-TSS (NR_045036)	-610.0	NR_045036	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	6.11469143487002	5.93951379229952	6.15676195773094	6.25973786508064	6.35378607212608	6.16121751530334	6.42678686485648	6.13205082986755	0.224251659684922	0.338970740530859	0.648223242193853
Merged-chr5-143043510-4	chr5	143043408	143043608	+	956.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	69512.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	4.26969036051036	4.87331101563725	4.31767692569551	4.34898329779253	4.51458142122232	4.44632750730123	4.51034080236288	4.31504514305706	-0.0578918465201825	0.883675731591822	0.956342055191766
Merged-chr17-67431016-4	chr17	67430928	67431128	+	979.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76537.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	5.11877882028344	5.25621842121876	5.05558188089742	5.25083410142673	4.9369904779762	4.9785750261825	4.89341267671387	4.58188322758396	-0.626317705406439	0.0510686681415218	0.234574049940189
Merged-chr12-79625920-4	chr12	79625816	79626016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	298817.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	6.09783899625793	5.84575131087241	5.88878140166679	5.96419016420579	5.61766148903275	5.6988857116018	5.94657322205926	6.01474306489173	-0.207636332575928	0.416120885293387	0.710072021761014
Merged-chr12-91816229-3	chr12	91816115	91816315	+	908.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039089, intron 15 of 20)	intron (NM_001039089, intron 15 of 20)	-29779.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	3.52594686157563	3.73424976442969	3.72798750104253	3.57053626293395	3.56512543022978	3.33118040630439	3.51289413737131	3.46871513437273	-0.536545164802738	0.280432826870281	0.592435466826929
Merged-chr4-136891022-7	chr4	136890843	136891043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007574, intron 2 of 2)	intron (NM_007574, intron 2 of 2)	1971.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	4.98089843882101	5.05148180015392	4.80545153116746	4.73267930994743	4.90567702330357	4.82133756289905	4.66526281458326	4.9783441131146	-0.0785973823977441	0.813320696400867	0.927857767644014
Merged-chr19-46488740-3	chr19	46488623	46488823	+	811.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_015752)	TTS (NM_015752)	-12925.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	4.12701461015353	3.79514865791744	3.95261091552887	3.98215836958322	4.1021631685425	3.75278444332455	3.43160335208232	3.85282528952567	-0.42213218217922	0.388542381243043	0.688981838974675
Merged-chr6-50340827-3	chr6	50340720	50340920	+	985.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027881, intron 9 of 21)	MTC|LTR|ERVL-MaLR	42017.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	3.17012927734106	3.14383852947488	3.24905935781869	2.62368548403173	4.45219447038589	4.26914841531746	4.03077067229354	4.28494019367185	4.65921763382564	3.56330434850063e-14	5.07264880443852e-12
Merged-chr6-113038134-4	chr6	113038024	113038224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8178.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	6.89794520216834	6.9673225866846	6.73740326407189	6.75415472810456	6.5082923652351	6.6420082572321	6.50163170862164	6.62745302075078	-0.38979463126961	0.0550801290777139	0.245290590480757
Merged-chr7-25632859-4	chr7	25632736	25632936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007533, intron 5 of 8)	MIRc|SINE|MIR	5212.0	NM_146184	232984.0	Mm.192369	NM_146184	ENSMUSG00000059479	B3gnt8	B3galt7|B7galt7|BC025206	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding	7.15931094441863	7.14818819327295	7.21121580526804	7.13493715128925	6.135631856796	6.48457463911636	6.12163584196787	6.12574049201112	-1.35830311979815	9.08344550704737e-11	6.99730051673295e-09
Merged-chr3-121597420-4	chr3	121597320	121597520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46065.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	7.47732460770372	7.97618238309745	7.63687222874584	7.60913558598013	7.92219592416686	7.59570183356884	8.34495208570936	7.76424526339061	0.326484801267079	0.134274686062227	0.407911030152443
Merged-chr2-118158289-4	chr2	118158190	118158390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46414.0	NM_001313914	21825.0	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	5.29594075360802	5.55456202062561	5.35842346187397	5.55010722627864	5.2977975790344	5.50281516096531	5.60002283566321	5.35472707573381	-0.0324307571047868	0.908451608572287	0.966051797214713
Merged-chr1-85894556-4	chr1	85894449	85894649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022417)	promoter-TSS (NM_022417)	39.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	6.44359404718976	6.34160962715982	6.42686146957583	6.45287201523857	6.78930728453334	6.63918964081033	6.93746132606714	6.68143713240961	0.506149188246347	0.0141532524143382	0.100721291101797
Merged-chr17-78418142-4	chr17	78418046	78418246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285946)	promoter-TSS (NM_001285946)	6.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	6.94377971036521	7.05702806347404	7.15780016921387	7.12982088790505	7.33650653447894	7.44469053610932	7.38942712411594	7.2629064646907	0.379270447801796	0.0354823679845151	0.186970644860068
Merged-chr7-45247829-4	chr7	45247744	45247944	+	913.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324535, intron 1 of 12)	B2_Mm2|SINE|B2	7091.0	NM_001324535	381884.0	Mm.490944	NM_001324535	ENSMUSG00000094152	Slc6a16	Gm1084	solute carrier family 6, member 16	protein-coding	4.57602883550882	5.02127480663237	4.24264715995158	4.30374786565253	4.66682769699403	4.94432678448298	4.63653168948457	4.96914872663729	0.505733990408847	0.201741025836137	0.504186105754376
Merged-chr13-74208654-4	chr13	74208561	74208761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177333)	promoter-TSS (NM_177333)	39.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	7.54597605823261	7.36526767609633	7.40485035245142	7.78128372629799	7.27910122820946	7.6600548573797	7.74579053759513	7.5148635144449	0.0142017215806419	0.943805386425139	0.979787407574636
Merged-chr7-110773343-4	chr7	110773256	110773456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009667, intron 1 of 14)	intron (NM_009667, intron 1 of 14)	752.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	6.40729351578261	6.43408726779783	6.49540834269864	6.69991601746162	6.40240527681638	6.35000773882067	6.63387622834733	6.8402203562011	0.0611510847783551	0.790329025259535	0.918829338045187
Merged-chr17-27557050-14	chr17	27557085	27557285	+	931.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039356, intron 2 of 5)	CpG-6152	532.0	NM_001166477	111241.0	Mm.426212	NM_001166476	ENSMUSG00000078249	Hmga1b	Hmga1-rs1|Hmgi-rs1	high mobility group AT-hook 1B	protein-coding	4.13518716570388	4.01477722870618	4.58503082451343	3.97526695372297	4.43433857769072	4.35793497191943	3.90884539567941	4.43657112464287	0.279749043127707	0.525548036668449	0.783297418773761
Merged-chr7-45800690-4	chr7	45800602	45800802	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005511, intron 14 of 15)	intron (NM_001005511, intron 14 of 15)	13614.0	NM_011181	19158.0	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	5.35163341749728	5.10208747252287	5.0923626020999	4.70212281876145	5.16168634594455	4.67394683812588	5.09878002278987	4.95351010038828	-0.141577822939917	0.687063891109932	0.872049227983485
Merged-chr1-165618525-4	chr1	165618433	165618633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	16008.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	6.06937001988876	5.82397000513442	6.4304010210854	6.6037425362123	6.41669971473665	5.98318670064503	6.33009916647281	6.30492484798468	-0.0113873349614299	0.966951582926737	0.988419954922842
Merged-chr2-61577804-4	chr2	61577726	61577926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011529)	promoter-TSS (NM_011529)	-760.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	5.54252171638007	5.92351127615069	5.91577747084111	5.24806062604014	6.48430231671582	6.13773577657786	6.58708489327846	5.79064549615337	0.969090519919118	0.00152086065674467	0.0188824944507987
Merged-chr13-46727719-2	chr13	46727619	46727819	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175749, exon 1 of 22)	5' UTR (NM_175749, exon 1 of 22)	130.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	5.53433332718058	5.85143259849654	5.56498079392245	5.53510989090111	5.84574989804238	6.05164067817524	6.01695826223992	6.42122430552778	0.754184361285798	0.00504511741322433	0.0478425809160531
Merged-chr16-18416380-3	chr16	18416273	18416473	+	893.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007744, intron 1 of 4)	intron (NM_007744, intron 1 of 4)	-2879.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	4.34837586347548	3.73034617939786	3.9805024986944	4.82630847458852	3.89591978332234	3.87165893350029	4.06530191856411	4.46075991795635	-0.507296874858744	0.331567580876131	0.642627926701357
Merged-chr8-108714568-8	chr8	108714474	108714674	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007496)	promoter-TSS (NM_007496)	-70.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	4.16166697028078	4.36402653718095	4.63523262737138	4.63582885744411	4.46707068231276	4.34016266621137	4.24396283922662	4.63213419289012	-0.100563294247228	0.798336826899071	0.921988151874205
Merged-chr2-117018662-4	chr2	117018565	117018765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102406.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	6.31084827266324	6.08203827066437	6.75377995085801	6.70667841901223	5.98233020855451	6.52569769103865	6.53416899337227	6.39856435349614	-0.191086751825822	0.47634665778041	0.752895118225159
Merged-chr12-99381062-4	chr12	99380963	99381163	+	843.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 2 of 5)	Lx4A|LINE|L1	69011.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	4.29310924835908	5.57946938044885	4.91742177702707	4.27279572137545	4.99159971131158	5.1936883529933	5.08858918172242	4.6385378093786	0.203637939910728	0.659024247201464	0.858075830194168
Merged-chr6-128843238-4	chr6	128843149	128843349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16934.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	7.59629502665095	7.82475112230597	7.67555858765679	7.26446199309447	7.91352137627507	7.92634971380105	7.76532335944636	7.94099039463911	0.383063378469659	0.0442140365271187	0.214468509333773
Merged-chr10-8022195-3	chr10	8022070	8022270	+	730.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-66047.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	4.05082744572239	3.67597523769871	4.09201103760718	3.96542257839784	3.75105828483318	3.67123986520267	3.65520691185178	3.21011035731352	-1.0864489086566	0.0384428365886749	0.196727908616456
Merged-chr3-138488765-2	chr3	138488675	138488875	+	814.0	f0_balb.idr|f1_balb.idr	intron (NM_175224, intron 1 of 10)	intron (NM_175224, intron 1 of 10)	607.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	3.43723824270849	3.74369659406484	3.83441741273963	3.41732178424349	3.41930064618569	3.49282282703112	3.36619093663693	3.37654287895035	-0.669215869938329	0.197716832973446	0.499052711142443
Merged-chr6-99523472-4	chr6	99523355	99523555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2462.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	5.61490508073411	5.72297830942555	5.34456217115148	5.29742675420827	5.46589255921548	5.21825388086572	5.43281284627167	5.17998444876125	-0.283154830372821	0.341138157545997	0.650267691585916
Merged-chr2-129330758-4	chr2	129330670	129330870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20798.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	5.70656931759752	5.7072697439923	5.13714803355653	4.27636898008934	5.70812659647579	5.13556535010302	5.41290855177203	4.86924683481509	-0.0142599912392322	0.974267560327899	0.990857401763433
Merged-chr1-88654882-4	chr1	88654803	88655003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47288.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	6.1359091930025	6.28303894129379	6.15733333624717	6.50084376002544	6.33079661586986	6.33296609204953	5.88331145727697	5.93332681365712	-0.22588143396572	0.373288539360131	0.676922319351088
Merged-chr8-39308336-3	chr8	39308246	39308446	+	908.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_044988, intron 2 of 3)	intron (NR_044988, intron 2 of 3)	10366.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	4.37921706901241	4.4018571417318	4.38001068433218	4.6159910620401	2.97850819461853	3.25129238489277	3.28096652782806	3.21000592772442	-6.51020803232231	7.09301380170816e-10	4.69213410215414e-08
Merged-chr2-164804998-4	chr2	164804879	164805079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178375)	promoter-TSS (NM_178375)	-98.0	NM_133240	170789.0	Mm.277878	NM_133240	ENSMUSG00000017307	Acot8	PTE-2|Pte1	acyl-CoA thioesterase 8	protein-coding	8.27720089020422	8.36741069951664	8.14510585788457	7.96034379788041	8.22926642371082	8.13831881828331	7.84959100792548	7.79664314057539	-0.218854753371941	0.244793385956281	0.555884768862855
Merged-chr2-52038034-4	chr2	52037952	52038152	+	977.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009398)	promoter-TSS (NM_009398)	-61.0	NM_009398	21930.0	Mm.3509	NM_009398	ENSMUSG00000053475	Tnfaip6	TSG-6|Tnfip6|Tsg6	tumor necrosis factor alpha induced protein 6	protein-coding	5.24181564545544	5.54688486385524	5.844191010815	5.59766044983967	5.39441419036088	4.99759035953877	5.37301318403702	5.73168825611903	-0.300430767505848	0.338616835582207	0.648105830753876
Merged-chr5-103719353-4	chr5	103719248	103719448	+	846.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34814.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	3.96144086533587	3.46294018726305	3.75667169400963	3.86398108961829	3.95693848126925	3.76024573333714	4.37665797542626	3.95961542724531	0.706887748724972	0.139740494633653	0.415685591824798
Merged-chr10-69352332-3	chr10	69352255	69352455	+	873.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007659, intron 1 of 7)	intron (NM_007659, intron 1 of 7)	557.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	3.8159805034158	3.57502852780348	4.42344364541146	3.90784730372631	3.98659799864303	3.99334066918803	4.0941516335813	4.01891348412878	0.160286906006138	0.735075007726353	0.895431262597044
Merged-chr3-86142707-4	chr3	86142619	86142819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016959)	promoter-TSS (NM_016959)	-51.0	NM_016959	20091.0	Mm.391785	NM_016959	ENSMUSG00000028081	Rps3a1	Rps3a	ribosomal protein S3A1	protein-coding	8.46628408356129	8.62198985931199	8.34589317390997	8.4570875417754	8.50397376286641	8.69481848720661	8.61112903063608	8.52619203938512	0.134018407014604	0.379423121343885	0.681993897831728
Merged-chr4-106678933-4	chr4	106678799	106678999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028209)	promoter-TSS (NM_028209)	45.0	NM_028209	72354.0	Mm.25806	NM_028209	ENSMUSG00000025413	Ttc4	2810002P21Rik|AF007005|L62	tetratricopeptide repeat domain 4	protein-coding	6.42519067837933	6.5330308638031	6.28157039214426	6.13671555485617	6.45056405552292	6.18286465107618	6.61137005886681	6.40453382859359	0.122829455286342	0.598644277072502	0.825987886019831
Merged-chr10-24133387-4	chr10	24133302	24133502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15887.0	NM_001358563	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	5.70621036585843	5.93774997571774	5.57448848900342	5.8885400510507	5.65338145369749	5.7505369607226	5.65309118988917	5.70317638024613	-0.179810954879736	0.487006324773905	0.760505982560317
Merged-chr1-106071470-3	chr1	106071386	106071586	+	837.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81080.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	3.98317167882794	3.65007212903105	3.89282944294482	3.81635694897247	3.53146194334917	3.75042587914297	3.72779762745236	3.93668767930994	-0.295181111149437	0.527795491278091	0.784574591591773
Merged-chr10-77969882-4	chr10	77969779	77969979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138301)	promoter-TSS (NM_138301)	-7.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	6.62393338660517	6.77666191008943	6.93694325622233	7.3029475344315	7.18568742368193	6.73486286316515	7.2924104655275	7.14880078492749	0.218156753708335	0.362570431333292	0.667720588146762
Merged-chr1-191333585-2	chr1	191333470	191333670	+	661.25	f0_balb.idr|f0_c57.idr	intron (NM_025864, intron 2 of 7)	intron (NM_025864, intron 2 of 7)	7605.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	3.16749083521226	3.1331976244198	3.57075188935775	3.23612164063699	3.61603614812074	3.34648969879046	3.50553249683334	3.61699946466456	0.842339385283778	0.110184470804882	0.366573710612399
Merged-chr11-50291034-4	chr11	50290921	50291121	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	1315.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	4.71759650010521	5.31735853878882	4.92174565731567	4.99277462749109	5.41622638507459	5.16987500253773	5.07263523163567	5.12644693132869	0.380149767507598	0.243536793047375	0.554604088569207
Merged-chr3-100618690-3	chr3	100618580	100618780	+	959.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010763, intron 7 of 12)	intron (NM_010763, intron 7 of 12)	66793.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	4.20535981875309	3.86498573056931	4.49372779523898	4.47728669116651	3.57006242369166	3.58255160364011	3.51940156122288	3.65804709130093	-2.08589917832426	3.28530193895616e-05	0.000785240116564676
Merged-chr9-99229610-4	chr9	99229486	99229686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001244762, exon 5 of 5)	exon (NM_001244762, exon 5 of 5)	7653.0	NM_001244762	623459.0	Mm.260891	NM_001244762	ENSMUSG00000096316	Faiml	EG623459|Gm6432	Fas apoptotic inhibitory molecule like	protein-coding	6.58785948749147	7.19825765314031	6.49054222576237	6.30663946811811	6.58120830208	6.7009272680102	6.53947305493026	6.15661254276279	-0.258118443124416	0.348668921875259	0.656349973293109
Merged-chr7-17066575-4	chr7	17066446	17066646	+	846.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4119.0	NM_001162950	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	4.16135582405577	3.55990060940674	3.89892098306053	4.01412671301842	4.01151456937262	3.55189213261865	3.88240294415654	3.84697838966324	-0.245375001712653	0.613064828806268	0.833091665704493
Merged-chr2-60298444-4	chr2	60298343	60298543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013825, intron 34 of 34)	ORR1D2|LTR|ERVL-MaLR	-13959.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	6.21168217220625	6.26944926846191	6.31024868000816	6.13604278657663	6.38086381188159	6.55910679775598	6.63422337376059	6.74430508688703	0.527008138550797	0.0166138541970951	0.112774892990181
Merged-chr18-57878152-4	chr18	57878033	57878233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009194)	promoter-TSS (NM_009194)	-545.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	6.1356927046207	6.2804707827336	6.25762504088423	6.10099874864189	6.57152855672146	6.52547699673236	6.22560399573816	6.38079879080189	0.372770422669372	0.0967651201959978	0.340736345623376
Merged-chr3-87562551-4	chr3	87562458	87562658	+	876.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36980.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	4.10922398199266	4.39731243085757	3.59668823608725	3.85118426692936	4.26895920032345	4.02904917197984	4.18214125340171	4.47412026107671	0.579384359701316	0.213868476912786	0.519418016486679
Merged-chr4-116656217-4	chr4	116656115	116656315	+	821.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-4541.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	3.71945040895507	3.87844920954167	3.25370270823674	3.54955522953997	3.62723447494059	3.56341744866	3.55006567342834	3.71778238086144	-0.00903948604837423	0.985849894967463	0.994788540667462
Merged-chr10-37137933-6	chr10	37137829	37138029	+	924.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008538, intron 1 of 1)	intron (NM_008538, intron 1 of 1)	997.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	4.84522111263419	4.56655716333126	4.94558556929002	4.67563016489828	4.6443100337176	4.6645262003114	4.75195984337501	4.84277447049035	-0.0655323550953357	0.848267751486371	0.942625689889496
Merged-chr1-156025294-4	chr1	156025188	156025388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144791, intron 4 of 6)	intron (NM_144791, intron 4 of 6)	9529.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	5.84794350186187	6.38551122226932	6.22771558031975	6.13865226909414	6.46184256288925	5.94889290955817	6.25199259543814	6.54404753290229	0.245472454813474	0.337746633789467	0.64757212710108
Merged-chr5-24674423-4	chr5	24674315	24674515	+	943.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	-11400.0	NM_016736	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	4.86351998232768	4.92306662592016	4.27081432955843	4.75549084316724	5.00074516964547	4.45355687817763	4.87391122130242	4.55587071095017	0.043520903098111	0.910574258501893	0.96671350549607
Merged-chr16-91413300-4	chr16	91413223	91413423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 3 of 6)	intron (NM_008349, intron 3 of 6)	7088.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	5.11489906402305	5.17648546772462	5.90905074777872	5.68727765889174	5.21108646255438	4.88913765127011	5.19253311033861	5.55769331692961	-0.505147618879945	0.148087492492285	0.429637222960315
Merged-chr10-118092346-3	chr10	118092298	118092498	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49389.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	3.41126395908947	3.52694128139353	3.2640510797191	2.96609475014469	4.26951543324076	4.20102482331237	4.17363394789888	4.30451582065149	2.99544587386615	1.9060846180252e-09	1.16040540433592e-07
Merged-chr16-11385983-4	chr16	11385901	11386101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 4 of 20)	intron (NM_028964, intron 4 of 20)	-19647.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	7.13058643297472	7.46340124681674	7.28735815135201	7.31770340589104	7.17983823302167	7.14545831860808	7.24054968972105	7.21800235159872	-0.152359676551066	0.403209759018491	0.700666571760464
Merged-chr5-109548974-4	chr5	109548892	109549092	+	978.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10001.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	5.68333272992492	6.46927820713927	6.09127019794476	5.2398761130108	6.60258845587695	7.07561238827988	6.48058019436545	6.34283161512881	1.05609738699526	0.00140670744938237	0.017728050555876
Merged-chr2-4551490-6	chr2	4551328	4551528	+	877.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 11 of 23)	MTEa|LTR|ERVL-MaLR	-8326.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	3.62034980760193	3.53277349676507	3.50994581646867	3.74007591199829	3.42145059022047	3.68346041038899	3.43846562234004	3.94436693466062	0.0743088663249924	0.883233247522009	0.956033847067461
Merged-chr17-36837085-4	chr17	36836973	36837173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286727)	promoter-TSS (NM_001286727)	-73.0	NM_001025599	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	8.51976524376135	8.5981027924373	8.38320721490896	8.64385394040932	8.53048717106167	8.67433492181471	8.4174642926823	8.42538307739506	-0.0368039648625246	0.813887674797559	0.928109035433692
Merged-chr7-89332377-3	chr7	89332286	89332486	+	618.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 2 of 14)	intron (NM_001360746, intron 2 of 14)	6401.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	3.34996010295423	3.33345480705246	3.40646740649902	3.46698007092424	3.48080451960425	3.5193929433702	3.33808722975292	3.22931338047019	0.0146589240297858	0.977281169818783	0.991888117862217
Merged-chr14-86781788-1	chr14	86781688	86781888	+	601.0	f0_balb.idr	intron (NM_019670, intron 25 of 27)	intron (NM_019670, intron 25 of 27)	359436.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	2.55741518425592	2.47216380283519	2.55773899523526	2.81097910781215	2.3830996958257	2.2298391391768	2.35603871498154	2.36141039543579	-1.65738400270596	0.0336335920055515	0.180638756912635
Merged-chr8-66334458-4	chr8	66334344	66334544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 4 of 7)	intron (NM_175188, intron 4 of 7)	-51857.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	6.49134460552043	6.66856692784721	6.63880018507741	7.01916174625363	6.47802574230524	6.3388311086039	6.55823691371502	6.83221636639266	-0.248329534613838	0.294116813769165	0.606493443631596
Merged-chr10-22306655-4	chr10	22306565	22306765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015465)	promoter-TSS (NR_015465)	-55.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	7.92174499198155	8.24436156087279	7.43903618494866	7.65115417437613	6.87071958044648	7.1909251468035	6.89361959999667	6.72336525477951	-1.23665567042139	1.03598613486126e-07	4.42089071302695e-06
Merged-chr4-44167879-4	chr4	44167689	44167889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175201)	promoter-TSS (NM_175201)	167.0	NM_001355181	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	5.74371637302034	5.94022648299586	5.96049687089228	5.86982882341786	5.89130272925356	6.2402087750291	5.95181165121566	6.02064932813707	0.227303973477735	0.351874064796141	0.659108597595279
Merged-chr11-93972435-2	chr11	93972321	93972521	+	637.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3900.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	3.41538023476892	3.45136678213305	3.13127175275013	3.35793440205598	3.04892251916713	3.30469164600228	3.18216961526721	3.19184530259386	-0.632808240123151	0.25086762387608	0.562161774331807
Merged-chr15-35938016-6	chr15	35937892	35938092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053071, intron 1 of 3)	CpG	254.0	NM_053071	12864.0	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	4.94256165179767	5.57036089520167	5.96532451331671	5.61174897717078	4.94224365420569	5.204050255229	5.27452403225062	5.55117447789013	-0.559589743608127	0.107990081677578	0.362559597364667
Merged-chr9-77596565-4	chr9	77596464	77596664	+	767.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40168.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	4.20899601227832	4.2090394467622	3.75853267490217	3.88209310209604	4.25671414872392	3.93832384011296	4.30992810307521	3.9245934614475	0.264468841038258	0.551656859165917	0.799073691139046
Merged-chr15-94629131-4	chr15	94629067	94629267	+	913.505981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178789)	promoter-TSS (NM_178789)	-18.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	4.11152761229697	3.950629936613	4.45156143712395	4.07356497342115	4.2712169963591	4.08104930408388	4.18726130813806	4.41089480730328	0.234195215951169	0.570529942594471	0.810152119115078
Merged-chr18-39737437-4	chr18	39737335	39737535	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36062.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	4.84775349275125	5.31492496806384	4.73247628163839	4.68131180375103	4.92814324146854	5.25499867881218	4.5842292887153	4.68832437497971	-0.0546967855233523	0.88481463714634	0.956746645612156
Merged-chr6-148621758-3	chr6	148621651	148621851	+	887.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7442.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	4.19972647423094	4.01525867535071	3.94394119616309	3.62741265194107	3.73013826392826	3.61389884886915	4.01708111522304	3.73677844428194	-0.483587412884898	0.316429199546732	0.628400033327851
Merged-chr15-25831517-4	chr15	25831408	25831608	+	894.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11790.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	4.52125703157019	4.05808758262041	4.69602196135124	4.49207072074206	4.09573041285301	4.44876854285524	4.21048492553116	3.90980759241805	-0.687285757129911	0.10873412980484	0.364041895257499
Merged-chr9-56168140-3	chr9	56168041	56168241	+	755.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-7071.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	3.23971993724854	3.34944125377671	3.13601496009055	3.20200422184373	2.92824786221233	2.78571033880366	2.75264816436777	2.89471608380388	-1.77608920882436	0.00573475016777745	0.0525819634409675
Merged-chr1-64531672-4	chr1	64531540	64531740	+	829.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1164.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	3.68283857867775	3.85013800753272	3.56889319862347	3.80141300050032	4.09836958350424	3.55851836571894	3.77295112489294	3.88336492298762	0.340542733444906	0.474964447406556	0.75199957250939
Merged-chr18-53088456-3	chr18	53088362	53088562	+	878.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87830.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	2.9873055761282	3.1528498069633	3.06143119492234	3.09749817171212	3.76950036550245	3.66055475302207	3.57483811862314	3.53953671941728	1.97789960741773	0.000231404017323443	0.00409932965382412
Merged-chr2-59231800-4	chr2	59231705	59231905	+	963.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	70955.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	6.2865225459681	5.77534247546249	6.52383909896884	7.08535219304545	6.23538967616156	5.37639895924876	6.11882983888807	6.47216247405226	-0.592343574670522	0.27088807016492	0.582670886352706
Merged-chr7-106711631-4	chr7	106711524	106711724	+	921.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_1-LTR_MM|LTR|ERVK	4721.0	NM_146598	258591.0	Mm.223117	NM_146598	ENSMUSG00000108948	Olfr695	MOR283-6	olfactory receptor 695	protein-coding	4.8850374027908	4.6684287837439	5.05399650992324	5.10632497324421	4.74844910155818	4.59853090644851	5.42612874115647	4.55767097418056	-0.117404333656387	0.762322937906747	0.906895714622014
Merged-chr17-73393603-4	chr17	73393523	73393723	+	725.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033444, intron 1 of 22)	intron (NM_001033444, intron 1 of 22)	5673.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	4.02015811044052	4.1466147894149	4.25128579690967	4.72026156695815	4.19000557055968	3.65911514242733	4.00403544927234	4.0184006498717	-0.867860289125454	0.0691776096570792	0.281224086103482
Merged-chr6-29985237-4	chr6	29985138	29985338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040263)	promoter-TSS (NR_040263)	-91.0	NR_040264	76419.0	Mm.84522	NR_040263	ENSMUSG00000045709	Smkr-ps	1700023L04Rik	smal lysine rich protein 1, pseudogene	ncRNA	8.37618761491767	8.56359047448823	8.27396605125626	8.39513285766552	8.16594225507668	8.19369789426301	8.23509840596467	8.0107016741061	-0.322652712224997	0.0420473655750111	0.207752980304298
Merged-chr11-70669353-4	chr11	70669258	70669458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172561)	promoter-TSS (NM_172561)	58.0	NM_172561	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	7.07531387510113	7.05572763436831	6.61086428072772	6.71139066795932	7.1591637180178	7.38676736413582	7.0051172478985	7.0715606270968	0.398912050917173	0.0624097393469511	0.264451889330672
Merged-chr8-57653525-5	chr8	57653381	57653581	+	890.8033449999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144731)	promoter-TSS (NM_144731)	-426.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	4.03766889582199	3.92368645574827	4.21839887633389	4.32655166135308	4.04538213738558	4.05955179191232	3.86919263128862	4.12898917275934	-0.310505334655915	0.467599104801273	0.747026558181345
Merged-chr18-23812714-5	chr18	23812595	23812795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	8725.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	5.12289473509536	5.40476951475447	5.21908290927449	4.56626700176273	5.20433932289761	5.42223931081308	5.09858056036497	5.12024465723011	0.217843690413461	0.535505039111432	0.789765706629649
Merged-chr10-88228776-4	chr10	88228694	88228894	+	853.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026070, intron 5 of 6)	intron (NM_026070, intron 5 of 6)	27697.0	NM_027487	67282.0	Mm.208465	NM_026070	ENSMUSG00000020056	Washc3	2900091E11Rik|5730495F03Rik|Ccdc53	WASH complex subunit 3	protein-coding	3.80953448009101	3.91917624443907	3.6061876294769	3.53392421684057	3.66593591101008	3.6662333489701	3.47833268986871	3.65823292077808	-0.305043326474141	0.529892014015485	0.786020363222879
Merged-chr9-56947659-3	chr9	56947563	56947763	+	866.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3261.0	NM_178374	66069.0	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	3.60026547207947	3.88334114036603	3.3560634873062	3.34531509462952	4.12278119197559	3.53788601552283	3.58661439568711	3.85137874146069	0.731248663556594	0.165612746055953	0.456462716418845
Merged-chr2-71389643-4	chr2	71389534	71389734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026115, intron 1 of 10)	intron (NM_026115, intron 1 of 10)	374.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	5.96659766236641	6.30312206215158	6.03651955051793	5.93231765258672	6.45804870393134	6.21373600489303	6.67740209586667	6.11852572380675	0.495472799813537	0.0472594139715902	0.223798926562193
Merged-chr8-35587832-4	chr8	35587743	35587943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081279)	promoter-TSS (NM_001081279)	45.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	6.0276675949687	5.74341479184232	6.22535994048948	6.10807936210717	5.89142395025456	6.16082629781443	6.21138991996441	5.76573024579132	-0.0373976146567034	0.885278817289084	0.956964796206656
Merged-chr17-71486766-3	chr17	71486662	71486862	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11419.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	3.95008065566634	3.97473473933503	4.35653543608832	4.09994987829549	5.11201609133377	4.92605561119015	5.70854839610539	4.81789388447381	2.2987612285034	2.11408910954268e-08	1.05525069234319e-06
Merged-chr2-160060273-4	chr2	160060183	160060383	+	956.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43630.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	4.58055585811305	4.42101238824414	4.30993121266123	4.80995154970765	4.3532355739628	4.97554209916349	5.02718188631419	4.35655695302303	0.334735264412869	0.420238951389424	0.713162823854942
Merged-chr18-75502776-4	chr18	75502686	75502886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-11859.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	5.98934674555082	5.63252834641235	6.90613616508251	6.68337924446812	6.80636459108389	6.55814467244493	7.02053685970203	6.8888800653307	0.604052831510104	0.0568835821719156	0.249840583451486
Merged-chr12-98316075-4	chr12	98315988	98316188	+	686.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47453.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	4.07279939990833	3.56074265129117	3.63700679497633	3.85731933868306	3.66045354077917	3.69559754109495	4.0132283052041	3.84726638594563	0.0299290277162996	0.950063987097368	0.98220432130175
Merged-chr15-81399713-4	chr15	81399616	81399816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347075)	promoter-TSS (NM_001347075)	-22.0	NM_133726	70356.0	Mm.180337	NM_133726	ENSMUSG00000022403	St13	1110007I03Rik|3110002K08Rik|AW555194|HIP|HOP|HSPABP|HSPABP1|PRO0786|SNC6|p48	suppression of tumorigenicity 13	protein-coding	7.11593684977304	7.19998570416302	6.71927875785872	6.68273375729263	7.11430454456373	7.21149155876248	7.11486425460175	6.7604228192875	0.165075707704451	0.464612793803335	0.745523090592339
Merged-chr17-35241935-7	chr17	35241825	35242025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252457)	promoter-TSS (NM_001252457)	179.0	NM_019693	53817.0	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	6.16392693766152	6.59258170486209	6.46929952688828	5.92693950343732	6.68861222886531	6.90311579440551	6.15460312844813	6.7368815791414	0.505009208567293	0.0620219183841923	0.263451580155662
Merged-chr13-110601520-4	chr13	110601424	110601624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	206480.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	5.60991137975471	6.06322756706063	5.79298826853291	5.81734098584095	6.15433029152459	5.91909622928698	5.61019394811975	5.60694924560726	0.0358855189789027	0.897921169882663	0.961909742807147
Merged-chr16-75766948-4	chr16	75766850	75767050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030201)	promoter-TSS (NM_030201)	-132.0	NM_030201	110920.0	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	9.18488557885301	9.41264459706145	9.21158476708556	9.39312069055323	9.34718854085625	9.53175090456302	9.42518846637748	9.40256737995834	0.146034907894998	0.304377355478822	0.616988329768724
Merged-chr15-39907267-1	chr15	39907167	39907367	+	868.0	f0_balb.idr	intron (NM_172814, intron 1 of 6)	intron (NM_172814, intron 1 of 6)	36727.0	NM_001347036	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	3.48597651581622	3.89252063183968	3.88245757184728	3.7379893810975	3.39995474897024	3.34468679810818	3.28956292632599	3.59552720058534	-1.1477663652283	0.0270793201356183	0.156514732272284
Merged-chr15-62040538-6	chr15	62040379	62040579	+	836.722229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	1222.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	3.63188200912561	3.39681150181807	3.24595874055879	3.29176154726072	3.22385773514976	3.65054040769932	3.41240692923953	3.47872367904953	0.170522434189048	0.747123730592628	0.900416857483833
Merged-chr11-57644586-4	chr11	57644507	57644707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134189)	promoter-TSS (NM_134189)	-835.0	NM_134189	171212.0	Mm.271670	NM_134189	ENSMUSG00000020520	Galnt10	AU018154|C330012K04Rik|GalNAc-T10|GalNAc-T9|Galnt9|ppGaNTase	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding	5.48636312765731	5.47289263926091	5.71732414608406	5.72749041571776	6.0843769300497	5.94590293245031	6.36102463830655	6.29371518076757	0.897491670849112	0.000490563962744276	0.00760903297105574
Merged-chr14-31641108-4	chr14	31641023	31641223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025295)	promoter-TSS (NM_025295)	66.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	7.17736328235748	7.082158662872	7.40645298552008	6.91105592174847	6.6047966852011	6.82315701096795	6.89145742216379	7.18438801789835	-0.361042663550157	0.10797056814827	0.362559597364667
Merged-chr4-13281593-4	chr4	13281514	13281714	+	786.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	374777.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	3.78214181521666	4.02439144742316	4.28714396002253	3.79223221113615	3.44655595871552	3.61371466924985	3.41859368137422	3.78046895409206	-1.26032770663227	0.0126816512846054	0.0934534896766668
Merged-chr9-58266639-4	chr9	58266543	58266743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13479.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	5.79041105058553	5.60609225704571	5.58587051049405	5.71304283166077	5.85441943779291	5.73376346192316	5.95770681440507	5.83390108918322	0.279808222615461	0.263724169158393	0.575816645292187
Merged-chr5-130023861-3	chr5	130023761	130023961	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133768, intron 2 of 16)	intron (NM_133768, intron 2 of 16)	520.0	NM_133768	109900.0	Mm.23869	NM_133768	ENSMUSG00000025533	Asl	2510006M18Rik|ASAL	argininosuccinate lyase	protein-coding	5.15780147449823	5.57444220595896	4.7453309903573	5.14006363273117	5.95914758944495	5.56248681531004	5.80350971474771	5.54978317405205	0.943829749201694	0.00310789216384925	0.0328507063158042
Merged-chr12-79006820-4	chr12	79006722	79006922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178745, intron 1 of 2)	CpG	455.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	5.41928662214243	5.2721636767443	5.0141758532347	5.13835822074007	5.89082416348558	5.75681133381229	5.72092643768831	5.35705522819541	0.850146237902961	0.00343018248684266	0.0354570083112073
Merged-chr13-30994079-2	chr13	30993979	30994179	+	636.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20032.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	2.53348064106718	2.89410247399056	2.7565813723235	2.62835506070604	3.024609973877	2.932163622147	3.04846185025561	3.11267970476454	1.45392156121204	0.0203717398133223	0.129606727580664
Merged-chr14-33168871-2	chr14	33168771	33168971	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 1 of 58)	intron (NM_001146022, intron 1 of 58)	16195.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	3.44585728809647	3.37732648056888	3.44630404423757	3.57225616633918	3.36302027928821	3.37244320337347	3.64500612906587	3.96317216036812	0.446948473321716	0.394232153084182	0.693379056693329
Merged-chr2-28583047-6	chr2	28582935	28583135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290484, exon 1 of 12)	5' UTR (NM_001290484, exon 1 of 12)	244.0	NM_148928	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	4.7949257292563	4.97814894565079	4.91589317615564	4.42183953048475	5.13411868367077	5.66304483005071	5.38910178654963	5.3869259274844	1.18651842516979	0.00041634183343493	0.00664457295113562
Merged-chr11-58214897-4	chr11	58214785	58214985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019440)	promoter-TSS (NM_019440)	-92.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	7.33243017499541	7.20894991846338	7.05277628205952	6.85682384637807	6.78854251316356	7.06174259165739	7.06458931123928	7.04780750454207	-0.171945179114598	0.410925730940737	0.706273206869081
Merged-chr1-84443917-1	chr1	84443817	84444017	+	835.0	f0_balb.idr	intron (NM_152915, intron 8 of 12)	intron (NM_152915, intron 8 of 12)	-159272.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	3.37275536296934	3.14759646441936	3.15875777925031	3.43106872613051	2.80228277281475	3.07962466069557	3.20322916906213	2.90044046332387	-1.18352779967257	0.0523470863528003	0.238327943792664
Merged-chr6-134922132-1	chr6	134922032	134922232	+	637.0	f1_c57bl6.idr	intron (NM_009875, intron 2 of 2)	intron (NM_009875, intron 2 of 2)	1731.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	3.19327410199881	2.97404835677603	3.00308151731981	2.96360290919884	3.19457726627729	3.18149327082938	3.44435776390928	3.50487818350378	1.16998603746796	0.0345269999504467	0.183841811001858
Merged-chr8-94205935-4	chr8	94205850	94206050	+	923.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8614.0	NM_001357266	71805.0	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	4.47839710509058	4.65615308029344	4.73099485870713	4.48171254937675	4.73429411069018	4.94112731123292	5.09557356727052	4.72786624758119	0.620745690638558	0.0710721399686606	0.285939625301226
Merged-chr19-55217785-4	chr19	55217675	55217875	+	958.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 12 of 20)	intron (NM_001081076, intron 12 of 20)	23461.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	4.82118810832326	5.48772399749646	4.857985970432	4.229330045289	4.92228899255054	4.92281682431905	4.21660759939585	4.62227946600675	-0.455730466405242	0.318425588661709	0.63033847433642
Merged-chr9-85577556-4	chr9	85577468	85577668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	171766.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	6.17689309113719	6.12268302866117	5.51144382874926	6.07959622264331	6.12912130097363	5.9923949509349	5.63045279954134	5.88380998307129	-0.119967175040246	0.666958077518561	0.862204789067879
Merged-chr5-125340049-6	chr5	125339833	125340033	+	816.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	1161.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	2.64407843674338	2.76764100652363	2.98255183806611	2.57157464953126	3.11511910056847	2.96711879382234	3.18723749081872	3.03924958627938	1.52093967784193	0.0143516035955652	0.10167886614561
Merged-chr13-44923062-3	chr13	44922957	44923157	+	769.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 9 of 9)	intron (NM_025772, intron 9 of 9)	79039.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	3.50757223559813	3.41201780028097	3.29526856814718	3.45959041647929	3.1592814800777	3.21904489849933	3.44370420116649	3.03941650535733	-0.738356405655217	0.178597844655596	0.474403912720026
Merged-chr11-119238302-7	chr11	119238188	119238388	+	930.6785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175430, intron 6 of 18)	(TTTG)n|Simple_repeat|Simple_repeat	9716.0	NM_175430	207607.0	Mm.189885	NM_175430	ENSMUSG00000039963	Ccdc40	B930008I02Rik	coiled-coil domain containing 40	protein-coding	3.78402180794319	3.54507101761253	3.57950310408838	3.70076151068368	3.36447209008487	3.69692474615694	3.45097870651416	3.91662271314259	-0.116696937651829	0.816959285013344	0.929622615879435
Merged-chr18-4258333-4	chr18	4258189	4258389	+	970.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	92457.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	4.75234322105255	4.92879747196385	4.92990887610095	5.02538089829852	4.53080437197492	4.88817096804788	4.61270953155665	4.49986408593608	-0.602758206599619	0.0799384423003403	0.306228794911693
Merged-chr16-78232427-4	chr16	78232325	78232525	+	934.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23029.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	5.33775457680058	5.67921084768369	5.64658782406055	5.20353498713237	5.38247773801004	4.85359168615111	5.12573956837699	4.92786332099052	-0.673383952747094	0.042482201539551	0.209291294530987
Merged-chr7-4581674-2	chr7	4581574	4581774	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207270, intron 5 of 19)	intron (NM_207270, intron 5 of 19)	22367.0	NM_207270	545902.0	Mm.188925	NM_207270	ENSMUSG00000035429	Ptprh	R-PTP-H|sap-1	protein tyrosine phosphatase, receptor type, H	protein-coding	3.15491220219154	2.98569598868553	2.95769946105979	2.5402170209158	3.09263808690269	3.39078282233352	3.31297594298072	3.6131667801291	1.75016850152496	0.00625268765784153	0.0559401778277403
Merged-chr12-113098744-4	chr12	113098707	113098907	+	873.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 1 of 19)	CpG	529.0	NM_054081	116870.0	Mm.212577	NM_054081	ENSMUSG00000021144	Mta1	-	metastasis associated 1	protein-coding	3.41875973209599	3.78535942909384	3.69387389250894	3.3695359034871	3.39218330793962	3.6534612775809	3.40689365580607	3.83177893407547	0.0226460501548346	0.965228251796397	0.987722213614764
Merged-chr17-69223320-4	chr17	69223228	69223428	+	867.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	53878.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	4.42898519617462	4.6319284678484	4.42970259049059	4.07236406558662	4.08314664710991	4.24300815714035	4.28540815631949	4.06297407695619	-0.557071614976312	0.181887718020958	0.478542212109808
Merged-chr6-39004097-4	chr6	39004002	39004202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 5 of 12)	CR1_Mam|LINE|CR1	63484.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	6.80170719910411	6.65697922016901	7.12984707061815	7.24345318840052	6.38400498638944	6.78440615813875	6.59048646694968	6.63512503283531	-0.561002319897195	0.0164786430810317	0.112178016054395
Merged-chr10-81575311-2	chr10	81575211	81575411	+	739.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252401)	promoter-TSS (NM_001252401)	24.0	NM_001252401	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	3.21704910462289	3.1226544908722	3.80738406060832	3.41420663212319	3.42123930449301	3.46169299574836	3.78943643798041	3.51707777582439	0.454757222535149	0.412381617534486	0.707537751397753
Merged-chr14-14602102-4	chr14	14602003	14602203	+	820.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100922.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	4.71880998788494	4.25679242932653	4.43908140928282	4.76708333528084	5.04137115510792	4.47603849675194	4.32757510153994	4.60382750722043	0.183816587457375	0.652848458500008	0.854764223296605
Merged-chr2-71338274-4	chr2	71338174	71338374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 3 of 17)	intron (NM_172436, intron 3 of 17)	29280.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	7.44484561677206	7.3559356674004	7.45568466297815	7.69833070226029	7.50314535667678	7.57430726984329	7.42826999566223	7.28802305776657	-0.069379114867829	0.708219731261466	0.882710273980338
Merged-chr12-100013056-4	chr12	100012955	100013155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	MLT1A0|LTR|ERVL-MaLR	48556.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	5.83183563775555	5.55733389798981	5.4543709653827	5.74369300531542	5.64665143647636	5.74131693199674	5.3364948282852	5.3904106796078	-0.199836642028211	0.475689274094985	0.752457845618304
Merged-chr15-31614927-2	chr15	31614827	31615027	+	656.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356313, intron 5 of 5)	L1MC4|LINE|L1	12811.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	3.05963089263455	3.01270897828159	3.28183598871823	3.23419613356736	2.96261326183466	2.97086314755986	3.04925296989208	3.11757112600336	-0.535381982310212	0.353408847552079	0.660243788974001
Merged-chr19-36409626-4	chr19	36409483	36409683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029508, intron 1 of 8)	CpG	30516.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	8.17421859783176	7.99598236184688	8.32256113039732	8.09669837989753	8.15004817136606	8.1933230654337	8.11877570995092	7.93303527601854	-0.0584451012930071	0.723696410882112	0.889731469259882
Merged-chr7-35150163-3	chr7	35150055	35150255	+	945.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30862.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	4.63961780076601	4.45450233341205	4.18663939625553	4.1343120422492	4.01700354428473	4.06047639716533	3.86526777879847	3.93429788958275	-1.00443566969815	0.0208627087865789	0.131729508446722
Merged-chr1-54923501-4	chr1	54923356	54923556	+	942.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	MER81|DNA|hAT-Blackjack	2931.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	4.52678822322329	4.22597238470364	4.20115104059848	4.47824114022057	4.19675939129179	4.0678833340104	4.31399412442877	4.05116191650111	-0.512827036505188	0.20283446478621	0.505367754389162
Merged-chr14-27038959-4	chr14	27038851	27039051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134437)	promoter-TSS (NM_134437)	-50.0	NM_134437	171463.0	Mm.206726	NM_027265	ENSMUSG00000040717	Il17rd	2810004A10Rik|AI428510|Sef|Sef-S	interleukin 17 receptor D	protein-coding	6.51666185998796	6.6937994784086	6.51781226836659	6.61668398212668	6.44107965770491	6.33887196082296	6.57863858858013	6.29972562027031	-0.250440643739627	0.238621975121319	0.548972916561797
Merged-chr13-43554826-4	chr13	43554723	43554923	+	955.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081059, intron 2 of 8)	intron (NM_001081059, intron 2 of 8)	5368.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	5.66092443978379	5.05336360356728	4.91342846592199	4.71392932292873	4.81614684671801	4.36878671452914	4.48119156700819	4.91006473795815	-0.923708129245212	0.0240737939874721	0.144811001625477
Merged-chr5-118560203-4	chr5	118560106	118560306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172424)	promoter-TSS (NM_172424)	-513.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	5.77765901143899	5.39181693899831	5.43620905743294	5.19118121648683	5.957463867169	5.6134625771347	5.95951962241596	5.60184272556877	0.596601309872298	0.0393471862658391	0.199729712721608
Merged-chr3-127768208-3	chr3	127768113	127768313	+	917.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	12314.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	4.72615353262363	4.94591661550512	4.97194028495931	4.41710100049731	4.34205236903405	4.09315468997231	3.94956193560524	3.76967644755102	-1.69082391598385	0.000223321434404662	0.00398590681531832
Merged-chr3-133314712-4	chr3	133314598	133314798	+	929.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293641, intron 1 of 11)	intron (NM_001293641, intron 1 of 11)	4588.0	NM_001293641	74776.0	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	5.17622437721979	4.94043731799988	4.74582092800983	5.22611642397961	5.31654072599087	4.74679500480938	5.39757315231291	4.94005223827649	0.169632177919701	0.625584063986457	0.839997329134293
Merged-chr4-9671396-3	chr4	9671303	9671503	+	946.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2059.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	3.8384969374693	3.23088503881087	3.68853456704586	4.26296937170487	3.69174483719935	3.75246577284284	3.56403012179763	3.63219524881162	-0.468564543596123	0.405429592537396	0.702273581691623
Merged-chr2-102977400-4	chr2	102977306	102977506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-75741.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	5.56606278452745	5.33080849655734	5.16504637382738	5.18376731786451	5.5876314731424	5.91301182440227	5.66412969788846	5.80364708350297	0.74072383299852	0.00789049386087461	0.0665447230477718
Merged-chr13-49307246-2	chr13	49307146	49307346	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	1962.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	3.35783956317479	3.65113917291212	3.54313393560188	3.93174867587836	3.57557627644747	3.82355552906256	3.52996162673712	3.84669010250206	0.132591615440625	0.797733518590863	0.921862017583033
Merged-chr3-96635464-4	chr3	96635328	96635528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162387)	promoter-TSS (NM_001162387)	-2.0	NM_011069	18632.0	Mm.20901	NM_011069	ENSMUSG00000028102	Pex11b	PEX11beta|Pex11pbeta	peroxisomal biogenesis factor 11 beta	protein-coding	5.40327295584186	5.48203418615693	5.60405929268404	6.05389262857029	5.46454629752297	5.23520338188617	5.97637885058584	5.67691036859553	-0.107961229176158	0.738153081195338	0.896665270093572
Merged-chr7-142444329-4	chr7	142444225	142444425	+	943.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009405)	TTS (NM_009405)	1857.0	NM_009405	21953.0	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	5.70657179819573	5.54003472106452	5.37220684414753	5.65615781469247	5.39772434851816	5.21589763056103	5.31581171117719	5.03283172066464	-0.573251667161653	0.0480132856019646	0.226057524531171
Merged-chr8-88662522-4	chr8	88662431	88662631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 3 of 12)	intron (NM_145857, intron 3 of 12)	15184.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	8.38625229046815	8.55844775205995	8.45539135781917	8.34720288695843	8.55142176207478	8.48200665547338	8.66761502657712	8.50942159608688	0.149343711122263	0.320722725906879	0.63245145906536
Merged-chr17-48818054-3	chr17	48817929	48818129	+	685.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16B2|LTR|ERVL	-114553.0	NM_027452	70530.0	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	3.21730602376469	3.09651351219413	3.16317244994397	3.20334761489737	2.83687636177332	2.72353993059187	3.09447766665274	3.21591350777793	-0.79057340087575	0.202102195020617	0.504605685187757
Merged-chr11-55208453-4	chr11	55208380	55208580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153139, intron 1 of 10)	intron (NM_153139, intron 1 of 10)	4140.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	6.85194825848622	6.72363739758727	7.21749028485483	7.31633173866051	6.46616334006788	6.45582633795025	6.67449235136252	7.11719629689662	-0.495496480839415	0.050562526964453	0.233229960688928
Merged-chr14-50060725-3	chr14	50060616	50060816	+	744.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	23963.0	NM_146316	258313.0	Mm.463727	NM_146316	ENSMUSG00000060523	Olfr726	MOR246-4	olfactory receptor 726	protein-coding	2.36844924707623	2.31738743843989	2.36863771671981	2.04677574920998	3.08961706927024	3.11930771326913	3.19115321617413	3.05319582031341	7.03838560616644	5.63703628754029e-12	5.34984807881107e-10
Merged-chr16-44962991-4	chr16	44962879	44963079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027578, intron 4 of 4)	MIR3|SINE|MIR	19301.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	7.72053747497386	7.60250380973197	7.84538293759468	7.86569233316791	7.6924100175913	7.84952849567433	7.78523259150987	7.70844113942995	-0.0122694666163419	0.94194061564228	0.979016024223816
Merged-chr10-80935979-2	chr10	80935879	80936079	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5888.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	3.22309571744554	3.67668266872539	3.74710158732321	3.13707305639818	3.99435333891529	3.5384766588889	3.6822207963981	3.59246309558405	0.7926768768516	0.149085715670455	0.431127494747189
Merged-chr2-84619341-2	chr2	84619241	84619441	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355064, intron 5 of 18)	intron (NM_001355064, intron 5 of 18)	30139.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	3.48630778219972	3.69722358727577	3.71063780540639	3.50009353959614	3.63628914072235	4.06785758206914	3.79284665364219	3.42270836503075	0.453539307241924	0.360506423085145	0.665893379854484
Merged-chr19-28975467-3	chr19	28975365	28975565	+	858.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11311.0	NM_198651	381218.0	Mm.280653	NM_198651	ENSMUSG00000064202	4430402I18Rik	AW122618|Spata6l	RIKEN cDNA 4430402I18 gene	protein-coding	3.70780463046251	3.55839493645612	3.70836938992478	3.29662783815278	3.42646527181893	3.50105426525583	3.59456412287886	3.38438317793717	-0.293508298291754	0.568695519524266	0.808947236973526
Merged-chr4-8788817-3	chr4	8788721	8788921	+	833.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 2 of 36)	intron (NM_001355382, intron 2 of 36)	37497.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	4.18465688212904	3.72427556250107	4.01905061929436	3.74263945301355	3.41218693697662	3.7833272335686	3.70537997468352	4.10225483979226	-0.447217965083867	0.374693005652986	0.677891254741963
Merged-chr4-119053823-4	chr4	119053733	119053933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_131914)	TTS (NR_131914)	15278.0	NR_131914	433751.0	Mm.224312	NR_131914	ENSMUSG00000066060	Gm12866	-	predicted gene 12866	ncRNA	5.21424990710029	4.91902025837175	5.18364332960495	5.30365664853375	5.3651798781117	4.95517150605631	5.27875646008429	5.38538243345194	0.170602618724672	0.581536759820473	0.816369616347063
Merged-chr4-32657443-1	chr4	32657343	32657543	+	1000.0	f0_balb.idr	intron (NM_001081392, intron 1 of 101)	CpG	324.0	NM_001081392	100019.0	Mm.24627	NM_133874	ENSMUSG00000058006	Mdn1	4833432B22Rik|A130070M06|AA958993|D4Abb1e|Gm135	midasin AAA ATPase 1	protein-coding	5.0878979859961	5.16909352774446	5.08876067159428	4.92346714910264	4.70685768835031	5.05556507032941	4.99860309363341	5.05285148879153	-0.217990090738558	0.496916272342672	0.766809941166613
Merged-chr12-52604523-4	chr12	52604428	52604628	+	919.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	U6|snRNA|snRNA	-2206.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	4.5004608632075	4.7255654416889	4.81933096423493	4.38359748166531	4.44318769507607	5.12271756410757	4.98946228139496	4.54256912596144	0.399195681480333	0.30254021596462	0.615008140286897
Merged-chr18-3005651-7	chr18	3005515	3005715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117797.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	5.11541401073009	4.88233670199312	5.64033034314082	5.10640627298601	4.78112852996746	4.99334850969041	5.12440906605804	5.9523385753557	0.149765801903052	0.710291223362294	0.884042572171666
Merged-chr16-48829279-3	chr16	48829175	48829375	+	697.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12419.0	NM_023881	57263.0	Mm.21123	NM_023881	ENSMUSG00000022650	Retnlb	9030012B21Rik|Fizz2|RELMbeta|Relmb|Xcp3	resistin like beta	protein-coding	3.17528624233851	3.01639527587208	3.38774372097206	3.31898789642464	3.34426692676234	2.8792815520128	3.16392726999882	2.98858129637888	-0.458255309199677	0.450238459115895	0.735231557072919
Merged-chr1-170160742-3	chr1	170160650	170160850	+	842.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 3 of 10)	intron (NM_133806, intron 3 of 10)	14214.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	3.24817219280821	3.13289090040301	3.35453778938065	3.21342901233424	3.25162491991139	3.11446169819401	3.0612076068745	3.06986223722947	-0.406091895685046	0.465090636860524	0.745723070156486
Merged-chr6-147116768-3	chr6	147116657	147116857	+	679.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25682.0	NM_001081237	232539.0	Mm.491206	NM_001081237	ENSMUSG00000040102	Klhl42	A330079N23Rik|AI450355|C230080I20Rik|Ctb9|Klhdc5|mKIAA1340	kelch-like 42	protein-coding	3.43354774601425	3.36530845528476	3.17728774082098	3.30001661613462	3.73621604942643	3.66324645315164	3.63318846292003	3.74179354521069	1.23092403994418	0.0118126095490481	0.0888630455152787
Merged-chr9-86016666-1	chr9	86016566	86016766	+	716.666687	f0_balb.idr	Intergenic	Intergenic	173814.0	NM_001164792	21983.0	Mm.20864	NM_011627	ENSMUSG00000035274	Tpbg	5T4|AW495680|WAIF1	trophoblast glycoprotein	protein-coding	3.34008986306127	3.1108685549622	3.38798565107796	3.19296554367344	2.71472524972589	2.99074873958186	2.65173617351644	2.80911163603414	-2.18637413869428	0.00133609024785569	0.0170188918668791
Merged-chr15-57976087-4	chr15	57975978	57976178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9825.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	6.14067086489114	6.20794375042452	6.12074357800758	5.909511797892	6.52389215069593	6.61224207574759	6.37137072495391	6.23741674606617	0.542804407378622	0.0189760078650097	0.123520188735576
Merged-chr1-131690014-4	chr1	131689977	131690177	+	815.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145509, intron 1 of 5)	intron (NM_145509, intron 1 of 5)	1382.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	3.28708026408821	3.34114979427938	3.40733376711696	3.49136305534999	3.42201461113425	3.57812959386401	3.55462255247763	3.66403676996118	0.538822695096936	0.282585342365825	0.594758629298828
Merged-chr19-53579093-3	chr19	53578993	53579193	+	857.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21303.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	3.90157593818682	3.7827286096694	3.65198998803734	3.49808705617226	3.81116640891825	3.77003901810293	3.74244416486927	3.70399753518897	0.166275885293661	0.72203855383244	0.889095345567057
Merged-chr12-40543712-4	chr12	40543583	40543783	+	949.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	97630.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.58222862144987	4.48804600816384	4.05457158560503	4.5144940357955	4.83797310496886	4.9688035868251	4.39457743080283	4.45574681176795	0.566651031403644	0.155080189969603	0.440637693415433
Merged-chr18-31910710-4	chr18	31910636	31910836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026006, exon 1 of 1)	exon (NM_026006, exon 1 of 1)	1167.0	NM_026006	67158.0	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	7.74457839154921	7.7280611082171	7.80941262837815	8.00032127291138	7.89791239764838	7.96343846578454	8.02884154946844	7.96376227056468	0.165711634412392	0.319085317795289	0.630946296506678
Merged-chr13-49196623-3	chr13	49196517	49196717	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013610)	TTS (NM_013610)	9070.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	6.06922996330509	6.37107541828894	5.82804605258749	5.64528631781011	6.03728652052462	6.18334946131687	5.58914026389467	5.55499672166686	-0.203593673584521	0.504886559110304	0.771119418797875
Merged-chr7-35333985-4	chr7	35333882	35334082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027897)	promoter-TSS (NM_027897)	-255.0	NM_027897	52428.0	Mm.286600	NM_027897	ENSMUSG00000030494	Rhpn2	1300002E07Rik|AA536890|C85860|D7Ertd784e	rhophilin, Rho GTPase binding protein 2	protein-coding	7.20726593862238	7.34387516376242	6.95051279451706	7.41876404257431	6.86583605746465	6.60530211097606	6.87578259028443	6.74874343654018	-0.649551727594148	0.0017187354375078	0.0207669104916598
Merged-chr9-123931915-4	chr9	123931807	123932007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36785.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	7.80259784944021	7.34698116847416	8.10855520507054	7.78938319216789	7.31272458460077	7.2951479612002	7.5419007041762	7.26676849775639	-0.567445250301078	0.00714474594088706	0.0618380193733463
Merged-chr17-15498268-4	chr17	15498177	15498377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011185)	promoter-TSS (NM_011185)	-1.0	NM_011185	19170.0	Mm.32912	NM_011185	ENSMUSG00000014769	Psmb1	AA409053|C81484|Lmpc5	proteasome (prosome, macropain) subunit, beta type 1	protein-coding	6.47224895234696	6.70458419181804	6.63823300498207	6.60791629738346	6.65309580866898	6.82950582218857	6.84227688094937	6.64890079879806	0.189459956549357	0.351630563809115	0.658910409408162
Merged-chr3-51652916-4	chr3	51652797	51652997	+	862.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8282.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	4.10275879987429	4.12334986818866	3.9609443232176	4.05767401548846	3.94509738638991	4.0308750210794	4.08539841071607	3.95866987779872	-0.161181096039878	0.696465662017718	0.877228600292293
Merged-chr17-29497223-4	chr17	29497092	29497292	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6147.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	4.09286914973826	4.53757895279213	3.77548265112711	3.12139307416571	4.44550933255834	4.40086757200177	4.07471763756821	3.64878214776624	0.442755589392967	0.460437071126066	0.742687499720882
Merged-chr1-13373501-4	chr1	13373412	13373612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	CpG	571.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	5.98636955415187	6.10209953372175	5.94338480976627	5.83206838402659	5.8958922516473	6.16153468485724	5.79695170173854	6.00459254340456	0.00793428784340364	0.974320189511002	0.990857921292789
Merged-chr10-120113655-4	chr10	120113564	120113764	+	933.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080446)	promoter-TSS (NM_080446)	-699.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	5.12962115043028	4.34107090196784	4.76593242484232	4.41312924971328	4.57034494921929	4.15379303288121	4.55461830713419	4.83126860102861	-0.304749856688652	0.472031310861168	0.750299901668082
Merged-chr12-31059693-3	chr12	31059597	31059797	+	847.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14271.0	NM_027828	104943.0	Mm.248938	NM_027828	ENSMUSG00000036136	Fam110c	9030611O19Rik|AU019489	family with sequence similarity 110, member C	protein-coding	2.98713584895629	2.90473032189644	2.9874406310733	2.70503512931869	4.19761568137872	3.64271246667288	3.75037548607915	3.89623152731962	3.89412885487055	6.12272834088963e-11	4.84232978417981e-09
Merged-chr13-119442304-1	chr13	119442204	119442404	+	565.0	f0_balb.idr	intron (NM_145457, intron 4 of 10)	MTC|LTR|ERVL-MaLR	13402.0	NM_145457	218693.0	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	3.40535395834662	3.02809292308178	3.24792228523896	3.03677542986177	3.16052159067626	3.30291761530085	3.05757955745919	3.18892995730839	-0.00244739606010689	0.996540486308268	0.998649284589029
Merged-chr4-123139953-4	chr4	123139854	123140054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019489)	promoter-TSS (NM_019489)	-13.0	NM_019489	56031.0	Mm.126873	NM_019489	ENSMUSG00000028651	Ppie	2010010D16Rik|Cyp33	peptidylprolyl isomerase E (cyclophilin E)	protein-coding	6.55237398977672	6.60604377564291	6.07996091046593	6.17550528249338	6.70296817426801	6.30363872789473	6.62544518436	6.65470832302238	0.322787446530122	0.181278771345379	0.47780135214223
Merged-chr8-45367307-4	chr8	45367196	45367396	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153535, intron 1 of 13)	intron (NM_153535, intron 1 of 13)	14995.0	NM_153535	212326.0	Mm.51259	NM_153535	ENSMUSG00000070044	Fam149a	AW213256|mKIAA4166	family with sequence similarity 149, member A	protein-coding	4.29604537544615	4.65485656656228	4.94062820718474	5.19341864402124	4.28302100065476	4.37394845802809	4.71245827623434	4.90523512979626	-0.499045405289074	0.239176746239908	0.549614418057695
Merged-chr15-24621649-4	chr15	24621553	24621753	+	820.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	792111.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	3.97237339475829	3.82459522167452	4.16753198503299	4.45822871165486	4.17100198409652	3.86519485074311	4.14914410358351	4.44648807496224	0.0781100793504054	0.865534372950387	0.949712827689774
Merged-chr1-135281555-2	chr1	135281455	135281655	+	912.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 1 of 9)	intron (NM_001159624, intron 1 of 9)	2529.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	3.31610691138064	3.03481225073187	3.67527607852225	3.34409968419661	3.06310541960155	3.30640018347726	3.65807927345588	3.37248060421923	0.0201909896652389	0.97244763111546	0.990071088442147
Merged-chr12-55560262-4	chr12	55560250	55560450	+	937.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4855.0	NM_001277340	79459.0	Mm.392781	NM_001277340	ENSMUSG00000063129	Aldoart2	4933425L11Rik|Aldo1-ps1|Aldoa-ps1	aldolase 1 A, retrogene 2	protein-coding	4.20314838092149	4.35058721146965	4.33222633092067	4.09098649073911	4.15795368070975	4.23521816060937	3.9407006555591	4.20119829763221	-0.256054727509595	0.52850042503507	0.785101361861029
Merged-chr5-99375891-4	chr5	99375791	99375991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-122964.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	8.16619861208363	8.46867936865216	8.46192576949479	8.25204651360814	8.02468571901624	7.95949039715723	8.12882120164318	7.44957194892539	-0.543569281295609	0.00583944163050714	0.0532468479593602
Merged-chr7-30717450-4	chr7	30717325	30717525	+	895.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018731, intron 10 of 21)	intron (NM_018731, intron 10 of 21)	5216.0	NM_001290627	11944.0	Mm.12821	NM_018731	ENSMUSG00000005553	Atp4a	-	ATPase, H+/K+ exchanging, gastric, alpha polypeptide	protein-coding	4.5435716625769	5.19322882367414	4.58564330916544	4.75962965383398	4.30799743156742	4.4454031576777	4.60403183236456	4.45461758189697	-0.765541724581817	0.0464257293288218	0.221399406265128
Merged-chr6-72092882-3	chr6	72092805	72093005	+	675.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4703.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	2.9122806566932	2.90815958815504	3.07837782364112	2.89209552747472	2.52835892816098	2.89659039065497	2.64511478469564	2.721239479652	-1.21777329784461	0.0672725097960533	0.276752029995885
Merged-chr13-3779965-4	chr13	3779860	3780060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	24358.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	6.6858571156081	6.24327903198551	6.42250113148889	6.73548097023292	6.30924981784714	6.56339897759774	6.31869093901251	6.06002486691221	-0.330003501516882	0.174642537073442	0.469069910997419
Merged-chr11-116110789-4	chr11	116110707	116110907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172570)	promoter-TSS (NM_172570)	-572.0	NM_172570	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	7.80953141678901	7.72154830536183	7.50491259765866	7.44329738369761	7.47714930810019	7.84847533023414	7.44907341262418	7.44225866244183	-0.0800684793932681	0.680097715979691	0.868613329816696
Merged-chr15-51991167-2	chr15	51991067	51991267	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009009, intron 1 of 13)	CpG	593.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	5.74316526369858	5.57912828462897	5.85610863307287	5.5485093302764	5.4431839327423	5.4107646957702	5.45758665343862	5.69238991995789	-0.293060518829901	0.282490552863496	0.594629456225662
Merged-chr14-74977148-3	chr14	74977053	74977253	+	856.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046078, intron 2 of 2)	intron (NR_046078, intron 2 of 2)	2067.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	4.11262998397264	3.73905344796921	3.84085396315714	4.04613869260637	3.63812831923403	3.73832316006389	3.82500142538456	3.88823114802289	-0.511412197718623	0.262970824808101	0.574735947525663
Merged-chr4-43560504-4	chr4	43560406	43560606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011602, intron 1 of 56)	intron (NM_011602, intron 1 of 56)	2077.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	7.14282155917881	7.07345528677476	7.30712661109164	7.44328844624852	7.28499174379823	6.99261751908492	7.13116978752085	7.28151636597515	-0.10388954342422	0.598275674519427	0.825833439496293
Merged-chr2-145860763-4	chr2	145860635	145860835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028724, exon 9 of 13)	exon (NM_028724, exon 9 of 13)	-42506.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	6.58759246299126	6.68192118727635	7.03445008415074	7.33736556414373	6.81912664176263	6.40421865041768	6.81020595989982	6.93207576854437	-0.281594574884557	0.266482001849118	0.578164752957072
Merged-chr6-135276960-1	chr6	135276860	135277060	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-22624.0	NM_001080553	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	3.15553677715236	2.98118212628807	3.76075826917577	3.82937051351546	2.51087413708096	2.77544446411109	2.65575312391512	2.74280123746167	-4.94733331644836	4.13175647552582e-06	0.000125413345062453
Merged-chr14-74989510-4	chr14	74989402	74989602	+	750.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14416.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	4.28346525516929	4.18363640119756	4.19452198537137	4.25358670823598	4.43999046672114	4.11727581144472	4.26502816843763	4.23750856424392	0.120898298734653	0.756498364408254	0.904365010332629
Merged-chr19-3687833-4	chr19	3687769	3687969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1305.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	8.32939838784069	8.00528358064363	8.61285837646887	8.0495561594918	8.16945992011191	8.39425944256895	8.49714195091467	8.39944118523502	0.128929093817105	0.504227055914033	0.770626277304553
Merged-chr1-21218694-4	chr1	21218584	21218784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029398, exon 1 of 5)	5' UTR (NM_029398, exon 1 of 5)	109.0	NM_029398	75712.0	Mm.304763	NM_029398	ENSMUSG00000025933	Tmem14a	5730496E24Rik|C85783|PTD011	transmembrane protein 14A	protein-coding	7.22453186265742	7.43690554530457	8.24827125432072	7.51085252717458	6.61947963558675	7.23772735355689	7.13266850285869	6.98901673786454	-0.882424548284598	0.000920970029005228	0.0126064857104929
Merged-chr14-31394149-4	chr14	31394042	31394242	+	918.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	23535.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	4.44400046057998	4.17909113279488	4.84959660364555	4.76394060892524	4.42394153182175	4.61838490452516	4.42467180542808	4.39784553354487	-0.284153412549097	0.470628768344794	0.749281674465736
Merged-chr8-117537085-4	chr8	117536978	117537178	+	824.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	B4A|SINE|B4	38803.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	3.90495114564149	3.57461579570575	3.49441004235989	3.5655343433534	3.91148703840039	3.54795278098243	3.48191791729871	3.9030836771746	0.283113526830003	0.569693416404789	0.809514646775463
Merged-chr7-90024390-3	chr7	90024300	90024500	+	918.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4759.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	3.49005264025808	3.49382691979673	3.43632831744009	3.29660899570854	3.4260266960364	3.23616667573816	3.52781167583317	3.54048653843157	0.0530370530905451	0.917290629794874	0.969498258815213
Merged-chr4-101167215-2	chr4	101167115	101167315	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 11 of 24)	intron (NM_146145, intron 11 of 24)	98067.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	3.25836782543354	3.24477549273153	3.31500077299753	3.51159911700587	3.22444638305122	3.11372906586072	3.40623217077542	3.07251047145385	-0.497123470991972	0.371578983646755	0.675614006266856
Merged-chr11-120905625-4	chr11	120905516	120905716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 3 of 18)	intron (NM_027745, intron 3 of 18)	27256.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	5.1645987301412	5.21210228584458	5.10132902380359	4.81252958698078	4.88585913411172	5.274964052454	5.313470982117	5.03036019443072	0.118554338729356	0.715732174072691	0.886371710249844
Merged-chr5-144965989-5	chr5	144965933	144966133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029438)	promoter-TSS (NM_029438)	-203.0	NM_029438	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	5.02680864365795	4.57302260248805	4.96168136085723	4.93223616212144	4.8115614154689	5.09983432894108	4.67779138370453	5.05590795263408	0.0653219530629612	0.848258956808979	0.942625689889496
Merged-chr1-132135801-3	chr1	132135708	132135908	+	899.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008795, intron 1 of 15)	intron (NM_008795, intron 1 of 15)	3877.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	4.45687166543166	4.73611686391771	4.45757432321825	4.83324410369775	4.15449253832574	4.45390487602454	4.10776940506368	4.49599524409376	-0.782552831877424	0.0468451331204128	0.22251943510687
Merged-chr8-125199448-4	chr8	125199363	125199563	+	934.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	145268.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	5.18528299709355	5.40170529248192	4.60328671187027	4.8116444966072	4.78399288136118	4.55029951498964	4.66542863847178	4.36378671532155	-0.879681563343511	0.0239576287312692	0.144319571383126
Merged-chr11-62847117-3	chr11	62847039	62847239	+	914.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291441)	promoter-TSS (NM_001291441)	16.0	NM_001291441	213980.0	Mm.482259	NM_001033669	ENSMUSG00000090173	Fbxw10	Fbw10|HREP|SM25H2|SM2SH2	F-box and WD-40 domain protein 10	protein-coding	3.46623999146472	3.34225916222718	3.15376915570152	3.3008620897392	3.75733742210026	3.58253928534224	3.50703860356808	3.67004264730561	1.05654145500858	0.0346957651630915	0.184382082141217
Merged-chr9-41160993-4	chr9	41160887	41161087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2925.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	6.11808136496507	6.31249902269353	6.2756411227091	6.11749159638119	6.36453678080293	6.33572744330324	5.97992820937081	6.11479400030737	0.0160335672935541	0.945666355117047	0.980596379383872
Merged-chr16-92944045-4	chr16	92943933	92944133	+	830.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117959.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	3.57893955067295	3.83968711131	3.57939351943197	3.93910901889933	3.5187663213073	3.85762291525411	3.50929125321296	3.83436176876552	-0.220758480312988	0.655920612425441	0.856391692651398
Merged-chr13-55212572-2	chr13	55212472	55212672	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008739, intron 1 of 22)	CpG	2790.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	4.14855988307001	3.7656919291474	4.27076681824461	3.6710561588139	4.09670491367041	3.87449546368379	3.84859467814428	4.05858020305137	0.0106511111339204	0.98182888738101	0.993492379943959
Merged-chr16-10418012-4	chr16	10417897	10418097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011955, intron 4 of 10)	intron (NM_011955, intron 4 of 10)	6059.0	NM_011955	26425.0	Mm.29037	NM_011955	ENSMUSG00000022503	Nubp1	-	nucleotide binding protein 1	protein-coding	6.68440973097668	6.89730460416881	6.7705096480817	6.70499015946269	6.40145262661462	6.15909674570484	6.62197395944048	6.45709052037677	-0.496890309670729	0.0218527154731786	0.135883151451505
Merged-chr11-54807914-4	chr11	54807803	54808003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12016.0	NR_040284	432562.0	Mm.406948	NR_040284	ENSMUSG00000086789	Lyrm7os	Gm12228	LYR motif containing 7, opposite strand	ncRNA	6.41474113035242	6.98389211645807	6.75436796726308	6.68638198916661	6.86481330950544	6.8276378052572	6.30729414331957	6.50044512616308	-0.10858370424245	0.652812754785917	0.854764223296605
Merged-chr2-165968390-3	chr2	165968245	165968445	+	775.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24292.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	3.20622481063428	3.08032130919972	3.09947954607687	3.04230720479612	2.81573115866803	3.02801673180678	2.70483677016879	2.91824912511762	-1.04559950209767	0.0898885960402725	0.327399922126285
Merged-chr5-64810091-4	chr5	64809974	64810174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	6551.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	6.44154792092427	6.37276210558083	5.60788483132841	6.15791544615339	6.00075341451689	6.3105357208639	6.27463157154691	6.33778190554991	0.0714595711018906	0.79239770014715	0.919610988558604
Merged-chr10-14048669-4	chr10	14048575	14048775	+	990.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	82296.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	5.72147473416699	5.95935585584022	5.62294388496582	5.56516092761373	5.47197846460924	5.77141624780496	5.56850251985475	5.08050070162294	-0.386693730018127	0.190827789161983	0.490284569083293
Merged-chr2-35337076-4	chr2	35336978	35337178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013515)	promoter-TSS (NM_013515)	-69.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	7.83307720151173	8.0393274384071	7.89377679186375	7.58881237888662	8.00535298946882	8.11400999011483	7.9860410298643	7.74256493602959	0.16528455127989	0.369389220927047	0.673680696515046
Merged-chr14-30620947-2	chr14	30620847	30621047	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	5261.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	3.052734294736	3.05527196310287	3.11304514648338	2.9072582839125	3.05653150016896	3.28234338638105	3.04224173610653	3.1114050221304	0.395883315814831	0.48231022342285	0.757206984982019
Merged-chr16-75856154-2	chr16	75856054	75856254	+	960.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	53112.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	2.90697844724985	2.57263118302614	2.50212735023283	2.34383776228376	2.77297272546337	2.95974126893648	2.77490591051562	3.06926647533257	1.48505421853173	0.0326999475012048	0.17722908422967
Merged-chr6-70792206-4	chr6	70792113	70792313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009075)	promoter-TSS (NM_009075)	-38.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	8.91101003047783	9.08468278277105	8.98229949069657	9.09861853343662	8.90130989064044	8.98755638700221	9.07122157671437	8.92186314143326	-0.0669154815717754	0.637862886532541	0.847011595650305
Merged-chr1-173511814-4	chr1	173511714	173511914	+	747.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	24143.0	NM_001024721	545384.0	Mm.371698	NM_001024721	ENSMUSG00000070501	Ifi214	Pyhin-B|p214	interferon activated gene 214	protein-coding	4.14124162874151	4.28677245679348	4.56002305345378	3.70800352335443	4.11222655133869	4.49854371028966	4.07413523539705	4.55688778090929	0.302532857407057	0.512730407665966	0.776017039843318
Merged-chr7-68302791-3	chr7	68302689	68302889	+	732.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013811, intron 2 of 8)	intron (NM_001013811, intron 2 of 8)	-26195.0	NR_040340	100504026.0	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	-	predicted gene 16157	ncRNA	3.76308713396942	3.60651614461423	3.4506399802939	3.35782064088898	3.10148896157612	3.56786055487993	3.83483768027207	3.5615618191086	-0.0302364919192993	0.956300114864892	0.984641708333466
Merged-chr1-176801097-4	chr1	176800984	176801184	+	979.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099637, intron 1 of 19)	intron (NM_001099637, intron 1 of 19)	6040.0	NM_001099637	545389.0	Mm.269991	NM_001024722	ENSMUSG00000057335	Cep170	4933426L22Rik|A330004A13Rik|AI195353	centrosomal protein 170	protein-coding	5.24162748210106	5.0869885995321	5.1455938812522	5.70613727232648	5.26684172146283	4.89544391932035	5.27691233639983	5.43957518454862	-0.189504429591664	0.572480414355191	0.811251013052168
Merged-chr16-13820071-2	chr16	13819971	13820171	+	994.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346109, intron 1 of 7)	intron (NM_001346109, intron 1 of 7)	820.0	NM_001346111	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	3.07340297467168	2.91427776913549	3.0738061888411	2.728546384906	3.19876403055334	2.92216059420967	3.11891179310081	3.18463513038009	0.708688385349627	0.233338531489538	0.542984285762188
Merged-chr19-24971512-4	chr19	24971403	24971603	+	984.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9887.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	5.8284333200972	5.68936725970764	5.61568227536576	5.88026823828703	5.43792138977504	5.76396960014611	5.29991342885752	5.11172343064508	-0.582750662193335	0.0434944415904222	0.212185331144554
Merged-chr2-21146755-4	chr2	21146662	21146862	+	857.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58603.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	4.22637373364573	3.27383535084293	3.56796018546119	3.91553529454495	3.68157966441867	3.7478770893993	4.16933594713729	3.68318956199485	0.117138354741295	0.833459308330971	0.936308313522916
Merged-chr13-30767925-4	chr13	30767836	30768036	+	858.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013674)	TTS (NM_013674)	18703.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	4.6718038594851	4.31959832100143	4.81746479682527	4.86244728766082	4.33902126031374	4.45302748580809	4.39940926238001	5.14266628848745	-0.135748215804412	0.744545696934386	0.899296531468148
Merged-chr17-59021053-4	chr17	59020945	59021145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_145521, intron 2 of 2)	MTE2b|LTR|ERVL-MaLR	-7723.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	5.65808624865167	5.75441007261378	6.51311418989445	6.24191043575956	6.27316938915282	5.97888551833343	6.35301654085663	6.55296164128877	0.322471792372149	0.268762601022981	0.58039055787794
Merged-chr5-3343867-4	chr5	3343799	3343999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009873)	promoter-TSS (NM_009873)	6.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	5.92624276073741	5.90878950647393	5.81177254534137	5.6180872956389	5.8832724912852	5.80735062552383	5.96119712094708	6.02876316187676	0.186016432056933	0.458310051314774	0.741196722451408
Merged-chr17-17619240-4	chr17	17619151	17619351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	5238.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	5.86300145032415	5.86634742243947	5.63008034890073	5.69958263928746	6.18024162038786	6.29470216955548	5.96836057979491	6.01591373629906	0.567515819275578	0.0202817624432975	0.129238101158064
Merged-chr9-61971287-3	chr9	61971195	61971395	+	956.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 4 of 7)	intron (NM_028748, intron 4 of 7)	-24496.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	3.94705418323439	3.98302668100917	3.79832246466741	4.27200632724729	3.61448572921743	3.91838449106774	3.55604232728226	3.847823451665	-0.833177240379438	0.079436399038551	0.305137800710471
Merged-chr11-116413806-4	chr11	116413726	116413926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027258)	promoter-TSS (NM_027258)	-794.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	5.03237245532348	5.16566779789333	5.22706052789381	4.49578093956248	5.53534573679422	5.33928734511341	5.07605287731013	4.92078437349282	0.473913744971213	0.19130102610549	0.490711638465125
Merged-chr12-83999501-4	chr12	83999407	83999607	+	978.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9995.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	4.7593781372408	5.04613429571617	5.0712260869313	4.76839277127724	4.63545201908918	4.48192576379437	4.98379754849167	5.09792892911864	-0.187200345872957	0.601013226967205	0.827064333308382
Merged-chr13-24792531-4	chr13	24792406	24792606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9151.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	6.42991659075741	6.41878107175442	6.64810493266465	6.81346782011399	6.81487082967511	6.86923997994237	6.83729147452654	6.42645936359285	0.213132641455577	0.349804955979653	0.657298556221946
Merged-chr6-52303644-3	chr6	52303545	52303745	+	840.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-9853.0	NM_007966	14028.0	Mm.389754	NM_007966	ENSMUSG00000005503	Evx1	Evx-1	even-skipped homeobox 1	protein-coding	4.37544486729812	4.3052412363993	4.13663502254979	4.348268544903	3.7305547999668	3.71938839781412	3.71210652637336	3.78267119385471	-1.58311392676193	0.000368650590267406	0.00599912674088791
Merged-chr5-74729647-3	chr5	74729535	74729735	+	779.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26732.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	3.64599023857812	3.30737273952952	4.07291034386081	3.77239359335501	2.88067007041644	2.87691648611556	2.84017510263166	2.92657720546861	-3.97629682445529	1.65286803604627e-06	5.52085846728003e-05
Merged-chr19-12537415-4	chr19	12537308	12537508	+	898.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35412.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	4.28918094333418	3.94303399806935	3.94067088165955	4.12318954436224	4.42829025143425	4.32623484774181	4.54190400253532	4.45087195461071	0.863027469259975	0.0280542816193189	0.160275761407938
Merged-chr2-170436487-4	chr2	170436389	170436589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8644.0	NM_029815	76960.0	Mm.240850	NM_029815	ENSMUSG00000013523	Bcas1	2210416M21Rik|9030223A09Rik|AI841227|NABC1	breast carcinoma amplified sequence 1	protein-coding	6.59162692790026	6.86565491075039	6.73158865087557	6.44654831201777	6.75553764197881	7.03227601125504	6.76795679058394	6.6670297871752	0.214966327673231	0.322668327530873	0.634137966903749
Merged-chr19-53452762-3	chr19	53452660	53452860	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028427, intron 2 of 9)	intron (NR_028427, intron 2 of 9)	12036.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	4.51286110711308	4.5108526598447	4.74219455737159	4.94795004064146	3.44635002820338	3.44897220016402	3.47121918950803	3.62548661104637	-3.78686324955682	7.56256029180193e-11	5.89589790810701e-09
Merged-chr2-31077019-3	chr2	31076926	31077126	+	964.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	MTD|LTR|ERVL-MaLR	19474.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	4.83174976527501	4.05583452935564	4.48774902472271	4.59590058872629	4.75152942626075	4.01946724485509	3.94027970736332	4.31536953063629	-0.485318223438185	0.307067841771774	0.619334608547937
Merged-chr1-178406436-4	chr1	178406300	178406500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026626, intron 1 of 6)	CpG	382.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	7.74129029448728	7.65201999353672	7.75057663320143	7.81617446532027	7.65590613228512	7.80256779898729	8.02694836631541	7.77673540145682	0.0969198844269676	0.573867924161969	0.811973307930812
Merged-chr17-56291297-4	chr17	56291187	56291387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025836)	promoter-TSS (NM_025836)	-776.0	NM_025836	66905.0	Mm.311696	NM_025836	ENSMUSG00000024197	Plin3	1300012C15Rik|M6prbp1|Tip47	perilipin 3	protein-coding	7.59754671234781	7.91372457488507	7.34541299282186	7.61635574540129	7.57405135434493	7.9488449510458	7.75660576121359	7.61980870585993	0.120299142914957	0.540662382338906	0.792856338619265
Merged-chr11-75268744-4	chr11	75268627	75268827	+	974.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177708)	TTS (NM_177708)	74734.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	4.71009173679068	5.2511329277885	4.58002164495959	5.3485040940437	4.82151824286623	4.71419153062673	4.91475499465201	4.96952055651462	-0.349962924530687	0.347917916770377	0.655786070963606
Merged-chr9-7857325-2	chr9	7857225	7857425	+	715.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 5 of 8)	intron (NM_007464, intron 5 of 8)	15845.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	3.13304866938126	2.79408895950463	3.07026545316373	3.19224722925019	3.19458792715403	3.30665672159311	3.57725488982335	3.19203814327469	0.982418617697548	0.0965102421317831	0.340377689262619
Merged-chr2-103969298-8	chr2	103969169	103969369	+	934.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142336)	promoter-TSS (NM_001142336)	-288.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	3.67263239357812	3.34392449798391	3.18931278292382	2.95159622357925	3.36605427148533	3.54381742584349	3.30084611512932	3.36954152177252	0.313135374048786	0.584545711606761	0.817674741209741
Merged-chr13-24416550-4	chr13	24416448	24416648	+	867.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007717, intron 1 of 15)	intron (NM_007717, intron 1 of 15)	1426.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	4.18552474971935	4.0172006714789	4.47952835597758	3.96662117645937	4.31688926576495	4.53218894167891	4.02006034169627	4.3591611678936	0.377955529835616	0.369491675565692	0.673692529630015
Merged-chr15-8627326-4	chr15	8627209	8627409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83498.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	6.33915648675069	6.2656736454565	6.17362075758851	6.29773366178073	6.05173235397257	6.038470063274	6.08156795388416	6.22729927751327	-0.265170525530939	0.238373551111307	0.548815855691283
Merged-chr3-37340149-4	chr3	37340065	37340265	+	824.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-8488.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	4.12588489670619	4.08797652388428	4.46650652794936	4.34110152481417	3.81394208286497	4.25230866888893	4.28817676382501	4.34661726951703	-0.210407245429104	0.622803627065732	0.838719882147607
Merged-chr10-40099506-4	chr10	40099334	40099534	+	961.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	L1MC1|LINE|L1	42820.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	5.1945089549132	5.90241365466713	5.16393263970864	4.36386680909201	5.32339307741821	5.33969619153025	4.89513624215911	4.56624247081283	-0.372519130645183	0.409170509553716	0.704831627974249
Merged-chr14-14640373-4	chr14	14640273	14640473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62652.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	5.70894569577489	5.74094529142235	6.00658951003954	6.07488410506631	5.49178157011136	5.66410217422461	5.99585744659709	5.73135248523868	-0.288780964513269	0.290153477323471	0.602316613561416
Merged-chr8-120596155-3	chr8	120596057	120596257	+	793.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7082.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	3.5248609834372	3.81065828656036	3.2110976871744	3.33385665769392	3.50744127832954	3.80283234208954	3.51150144812161	3.72966936390081	0.489417207959437	0.350710490593988	0.658191315157789
Merged-chr4-28420882-3	chr4	28420791	28420991	+	786.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-392240.0	NM_001290434	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	3.345612297092	3.61956353817363	3.560728375382	3.90036769173078	3.05423781378722	3.12719311610999	3.389856972322	3.08798962197451	-1.72156746811182	0.00331448488128408	0.0345318675885421
Merged-chr3-65818749-4	chr3	65818652	65818852	+	681.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166659, intron 11 of 12)	intron (NM_001166659, intron 11 of 12)	139497.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	3.42562894665189	3.63193426394225	3.67041287524111	3.80705241791515	3.77873209572217	4.2992241473847	3.59961871743048	3.87429497243571	0.746296513103637	0.136401912793464	0.41091739052877
Merged-chr2-156862243-4	chr2	156862166	156862366	+	924.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026124)	promoter-TSS (NM_026124)	679.0	NR_015591	74487.0	Mm.490465	NR_015591	ENSMUSG00000085741	5430405H02Rik	2610307N17Rik	RIKEN cDNA 5430405H02 gene	ncRNA	3.9337709128734	3.68544506369347	3.87974064849555	4.26965557145324	4.26877230395596	3.75824191438837	4.01976808723182	4.7917178649538	0.746655837233719	0.144502246045332	0.423657174526788
Merged-chr5-107900608-4	chr5	107900549	107900749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016980, intron 1 of 7)	CpG	121.0	NM_016980	100503670.0	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	6.80173485768604	6.95471826841335	7.16436674307454	6.12680689769176	6.65375725294911	6.86302885116154	6.68190082524552	6.97971602253467	-0.00778428820768732	0.977070105120153	0.991840628251221
Merged-chr6-125548642-4	chr6	125548542	125548742	+	910.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4306.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	4.28933102317202	4.28200243939124	4.55001155795951	4.88173382451718	4.42954504300969	4.46567923730459	4.5288755433939	4.42378375872677	-0.19496708746	0.624665468052382	0.839581122865294
Merged-chr3-89795751-3	chr3	89795656	89795856	+	606.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22147.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	3.52040695942723	3.60496606172271	3.28627142349785	3.46694965917942	3.14925972330208	3.69133183747654	3.33693782124561	3.71706151136007	0.0481951366159338	0.929288535041834	0.974391484333367
Merged-chr12-84243626-1	chr12	84243526	84243726	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-24745.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	4.86656343823046	4.97455642646412	4.4247662796902	4.79854118324644	4.38563499508826	4.81920554781611	4.90934439760946	4.55834602820233	-0.229837813269973	0.537977875737132	0.79126455418755
Merged-chr7-141902508-4	chr7	141902409	141902609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347562)	promoter-TSS (NM_001347562)	-48.0	NM_001347562	54473.0	Mm.103551	NM_023764	ENSMUSG00000025139	Tollip	4930403G24Rik|4931428G15Rik	toll interacting protein	protein-coding	7.85060069505259	7.95232046240616	7.72770615314513	7.55243047712553	7.87502183615895	7.96874986667202	7.89937857214991	7.70602472551558	0.121989755415708	0.494180662362526	0.764896282999593
Merged-chr3-121885051-4	chr3	121884940	121885140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68189.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	5.23266260321614	4.9379597771386	5.0067485498501	5.2475483609874	5.19049689693187	5.2493079878955	4.94712931772809	5.10547480549294	0.0127074087852898	0.967258497651398	0.988492656396979
Merged-chr3-45378319-3	chr3	45378241	45378441	+	715.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098172)	promoter-TSS (NM_001098172)	-57.0	NM_001098172	18526.0	Mm.242644	NM_011043	ENSMUSG00000049100	Pcdh10	6430521D13Rik|6430703F07Rik|OL-pc|mKIAA1400	protocadherin 10	protein-coding	2.99348693131049	2.89478173544125	3.36699946728253	3.22545278438919	2.61159090895118	2.8272733607721	2.98308675487169	3.11039282147015	-1.0330989788646	0.120488291291206	0.384265951913617
Merged-chr5-125393254-4	chr5	125393149	125393349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3232.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	8.83465454824242	8.89870459376032	8.90675585740791	8.91921936596047	9.00815008928895	9.30514024010438	9.20542249728599	9.11476728474493	0.333040636964552	0.0208652598612897	0.131733930429904
Merged-chr10-95867748-3	chr10	95867648	95867848	+	640.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie18a|DNA|hAT-Charlie	-72915.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	4.13950344779379	4.10924737429324	3.91151583207705	3.95954609145458	4.02221712997445	3.9264188545634	3.79265050951806	3.80521528553645	-0.370515112869592	0.394147718437685	0.693350479467068
Merged-chr7-88252236-3	chr7	88252141	88252341	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-25844.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	4.81509347083039	4.83343745824649	5.20455273670661	4.85603390206489	4.73039787423909	4.38320209187142	4.52226571610904	4.13848680213019	-0.980971139568478	0.0111981216917855	0.0854951307411346
Merged-chr17-13007148-4	chr17	13007037	13007237	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013671)	promoter-TSS (NM_013671)	-702.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	3.90077049641712	4.2673547499152	4.18059732908235	3.36203859030526	4.39673198985712	3.85848251523588	4.11877374822138	3.47668247254978	0.0833504316020899	0.882372711118292	0.95572901330316
Merged-chr11-69419569-2	chr11	69419469	69419669	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5894.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	4.09939806010498	3.89073666842898	4.1000204614146	3.61071017883235	4.41420924824061	4.12648570332124	4.44648757448905	4.09750318872117	0.946364101779282	0.0303114860825476	0.168386893613491
Merged-chr8-72548950-4	chr8	72548864	72549064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027485)	promoter-TSS (NM_027485)	-654.0	NM_027485	70625.0	Mm.235885	NM_027485	ENSMUSG00000045248	Med26	5730493L18Rik|AI414941|AW495270|Crsp7	mediator complex subunit 26	protein-coding	5.834020789442	6.01191926327432	5.88247062863342	5.78413904737573	5.79333508676071	5.96200249620988	6.17679431453157	5.9680338441614	0.159442022394391	0.520667042868287	0.780877030797574
Merged-chr10-37190240-4	chr10	37190111	37190311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51285.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	6.66707749969328	6.74688103776187	6.55752577816531	7.05758941661018	6.65254283786719	6.6667112171678	6.3850133748189	6.64827826078618	-0.278569401719864	0.216305344076449	0.522833404170659
Merged-chr8-122263548-5	chr8	122263458	122263658	+	765.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18583.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	3.86430350560972	3.73638369960112	3.46540725009976	3.39039847872636	3.47501666675921	3.80024849242399	3.26673601555891	3.40383026464004	-0.39760925759674	0.45739669402601	0.740504919348528
Merged-chr4-3685393-4	chr4	3685268	3685468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	ORR1F|LTR|ERVL-MaLR	7247.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	7.59086714153382	8.00195669714639	7.57414110764291	7.57854605499248	7.89941718062658	7.93662513633197	7.71373005560999	7.43508582737235	0.0837388501641279	0.677603255821138	0.867764888703673
Merged-chr15-76232578-4	chr15	76232455	76232655	+	914.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163575)	TTS (NM_001163575)	-1177.0	NM_011117	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	4.46300585582066	4.55663317811138	4.57696966026056	4.19969491393037	4.28558830657605	4.37665330936736	4.03129176107666	4.19896560600239	-0.519095231401943	0.196924107238274	0.498200143206437
Merged-chr7-45163927-3	chr7	45163822	45164022	+	946.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182993)	promoter-TSS (NM_182993)	1.0	NM_182993	72961.0	Mm.255631	NM_182993	ENSMUSG00000070570	Slc17a7	2900052E22Rik|AI851913|Vglut1	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7	protein-coding	4.44554498929308	3.84967483787017	4.01086679269041	4.01462484550285	3.73084656233815	3.68348981389059	3.99336198349025	3.96030408164855	-0.68104266069547	0.142111961827416	0.419498077038414
Merged-chr16-33337365-4	chr16	33337303	33337503	+	966.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43333.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	4.57848372038042	5.14780187327019	4.6629195928539	4.57880837684205	4.8987633989106	5.02262577657407	4.71910970107416	4.39123447473837	0.0384369933502729	0.919968750683377	0.970406583631903
Merged-chr16-57228843-4	chr16	57228736	57228936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 1 of 17)	MTC|LTR|ERVL-MaLR	2630.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	6.95731666064617	7.30705362187521	7.11536124980877	6.88896166318462	7.59103929516389	7.49661522356538	7.80306468843072	7.77235997907514	0.805185318256927	3.31528712420661e-05	0.000791078854220255
Merged-chr5-145280476-4	chr5	145280379	145280579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2864.0	NM_001081431	666311.0	Mm.260773	NM_001081431	ENSMUSG00000070420	Zscan25	EG666311|Zfp498	zinc finger and SCAN domain containing 25	protein-coding	6.05442680471252	6.34747975866077	6.09936203762483	6.15787756240794	6.4382540648733	6.35923597942558	6.75893533125978	5.90987201256739	0.349281708217933	0.179289882427227	0.475558645945455
Merged-chr11-79658387-4	chr11	79658288	79658488	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	MIRb|SINE|MIR	16698.0	NR_045898	72218.0	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	4.49463794719281	4.72366760625018	4.40042094404099	3.77350378812971	5.25802106319993	5.15804524385245	4.79498556408634	4.88499981292622	1.38664169966079	0.000821233086447953	0.0114841944715675
Merged-chr2-103051349-3	chr2	103051260	103051460	+	834.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175094, intron 2 of 10)	intron (NM_175094, intron 2 of 10)	22153.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	3.10941569078307	3.31889021325072	3.83410062267206	3.78761550441123	3.41887977518236	3.4923915239848	3.42438670931459	3.69722054364983	-0.135960921766644	0.812279470262534	0.927484347824058
Merged-chr3-130888066-3	chr3	130887964	130888164	+	792.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-157666.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	3.45487110522538	3.85889281156254	3.32630290841496	3.18741932344768	3.74200883418978	3.63371744378454	3.89903823295462	3.8710709115599	0.973633987364885	0.0618157243301799	0.26308750669164
Merged-chr13-90841157-3	chr13	90841087	90841287	+	819.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64168.0	NM_001145879	435376.0	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding	3.5663733097003	3.43658231992315	3.6676011767608	3.64137025938185	3.52530805420849	3.44977064637663	3.38707991826115	3.61623855358002	-0.279959099561439	0.569909616396892	0.8096279056665
Merged-chr1-66815465-2	chr1	66815365	66815565	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357156, intron 1 of 14)	intron (NM_001357156, intron 1 of 14)	2130.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	2.90005890548051	3.16868058210366	3.34171096409366	3.05662494265801	3.54350129363269	3.218453771832	3.32807864414521	3.2852318847969	0.863991232817784	0.12320623500363	0.389179723070951
Merged-chr1-153796218-3	chr1	153796119	153796319	+	923.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243223, intron 15 of 20)	MTA_Mm|LTR|ERVL-MaLR	46793.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	4.2455795039387	4.66074922294418	4.29205993382771	4.27122684029008	4.18866315160158	4.32548477213502	4.13202579248508	4.53408308162923	-0.183933183702275	0.647340677728524	0.851654475722948
Merged-chr16-92714985-4	chr16	92714884	92715084	+	963.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-17655.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.45359177270146	4.4581488828342	4.66082975854227	4.48104905603417	4.72538092650738	4.71478634355675	4.38934487091291	4.9608261926449	0.437619352374392	0.225584833313613	0.53401965047325
Merged-chr1-74373514-4	chr1	74373414	74373614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD1|LINE|L1	-1689.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	7.48020928045073	7.48827551330161	7.37747164569479	7.48203077002773	7.26576276893235	7.05329694725949	7.3408104189268	7.06063244517861	-0.361533230657373	0.0464079216239427	0.221385368175603
Merged-chr11-79863596-3	chr11	79863492	79863692	+	920.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98795.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	3.86327350193763	3.93384120184234	4.34069224248025	4.1443433617588	4.00304462547414	3.62071415537954	3.84827353656239	3.96263993453746	-0.579453805734507	0.206792341579111	0.510809505458117
Merged-chr1-171234722-4	chr1	171234620	171234820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010185)	promoter-TSS (NM_010185)	-371.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	5.6909369350072	5.60167166555223	5.78898961911425	5.77778706334532	5.60266296968644	5.64908275902393	5.6120511747571	5.85298623195677	-0.0683121396398116	0.790817050657453	0.918885370783943
Merged-chr5-120517730-4	chr5	120517637	120517837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 2 of 13)	intron (NM_001177595, intron 2 of 13)	6545.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	8.46424106296229	8.85231073826643	8.76401453407355	8.64915409022861	8.74257183732415	8.67911178478301	8.76834936484759	8.58814643210911	0.00834907692058368	0.9576606472857	0.984870901124062
Merged-chr10-13966946-4	chr10	13966839	13967039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	CpG-904	560.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	6.61106866966329	6.76024289559533	7.1907582541115	6.45986742246279	7.13137018105999	7.04512827158694	7.29344032178442	6.73437219559731	0.410810501515492	0.0913402003623196	0.330260292674467
Merged-chr8-25009817-4	chr8	25009710	25009910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270996, intron 1 of 21)	intron (NM_001270996, intron 1 of 21)	7112.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	5.78119286034407	6.1822759747888	5.8352557937075	6.21510419270828	6.31354636747256	6.61751572781634	6.20195065839128	6.37284283626814	0.523087327978984	0.0376274220116539	0.193881733847366
Merged-chr17-71672170-2	chr17	71672070	71672270	+	866.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1091.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	2.75514001991129	2.71551416495614	2.75548796367477	2.53426286464662	2.64004082748527	2.86310239338441	2.80503190850625	2.55418201566642	0.16186439232354	0.804013730856071	0.924493051202757
Merged-chr11-52346469-3	chr11	52346360	52346560	+	861.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14402.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	3.95902936562392	3.53112049066605	3.43371696926019	3.21701745350013	3.85365162931599	3.84422770737285	3.65492022880804	3.9570753789607	0.84908674277475	0.0996833317449966	0.346284034664574
Merged-chr18-38185500-4	chr18	38185358	38185558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24304.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	5.84491466146331	5.87930195299336	5.77396238165869	5.66795611501192	5.68982526678546	5.87377301132485	6.08614603482507	5.86487387647196	0.152342531277006	0.549503970086022	0.798032733475074
Merged-chr8-11556440-2	chr8	11556340	11556540	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011919)	promoter-TSS (NM_011919)	-17.0	NM_011919	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	7.26097241097335	7.56621846333425	7.17331715880962	6.72180629802119	7.51524789666837	7.53214259056947	7.29858719397825	7.10936686239362	0.229939236408993	0.331975944792468	0.643055455679069
Merged-chr14-118938873-4	chr14	118938729	118938929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008929, intron 1 of 11)	intron (NM_008929, intron 1 of 11)	897.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	5.93247345584487	5.65266716818643	5.65704079995018	5.6685883233419	5.66784576169328	5.75264427730783	5.52177620532657	5.54566479400768	-0.168077133820875	0.521485313611434	0.781432035905523
Merged-chr2-14204436-4	chr2	14204321	14204521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081310, intron 3 of 3)	intron (NM_001081310, intron 3 of 3)	-24993.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	6.27185586263589	5.51112188112446	6.23882570700863	6.13097594233325	5.26956978465403	5.5944887577668	5.77956799162169	6.10692260896246	-0.56769051487555	0.0746060598045331	0.294497822250824
Merged-chr8-6144813-3	chr8	6144725	6144925	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1039538.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	3.06513612129064	2.89523871732343	2.98033912046471	2.64068647665189	3.96801694989118	3.56330222601339	4.59153963105258	4.44372844919559	4.87231434896712	2.03502516524157e-12	2.06047021673869e-10
Merged-chr9-41179251-4	chr9	41179138	41179338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21176.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	6.05087089888072	6.51524737839867	6.47369537618324	6.4839277035497	5.36064588102637	4.84364892371272	5.38794894771928	5.30922326700592	-1.88322951129213	9.79879028875077e-11	7.50772975202358e-09
Merged-chr13-113544825-3	chr13	113544728	113544928	+	738.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR52|LTR|ERVL	-41984.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	3.59101169295008	3.62254289916568	3.98746459535146	3.34537931773278	3.60789940292695	3.35164326602993	3.22727622500663	3.2361572179523	-0.922406381887422	0.103226725314089	0.352943370214791
Merged-chr3-89196703-4	chr3	89196604	89196804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6221.0	NM_001077411	14466.0	Mm.5031	NM_008094	ENSMUSG00000028048	Gba	GBA1|GC|GCase|GLUC|betaGC	glucosidase, beta, acid	protein-coding	7.35424784142424	7.38742633166253	7.31420918228035	7.50327823649276	7.44258100798039	7.3817954671294	7.35882511769017	7.35040371431486	-0.0182366308933372	0.916410276165647	0.969013846055034
Merged-chr16-31932967-4	chr16	31932865	31933065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172822)	promoter-TSS (NM_172822)	-886.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	7.22406078443343	7.46564232676804	7.21426009798595	7.07819891454013	7.49943774015142	7.22584413600583	7.3241054559755	7.01786943357018	0.0516991956071846	0.799282211740274	0.922485593889919
Merged-chr19-47148582-4	chr19	47148466	47148666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4392.0	NM_001081271	546729.0	Mm.439624	NM_001081271	ENSMUSG00000079258	Calhm1	EG546729	calcium homeostasis modulator 1	protein-coding	6.65639878755792	7.1067971929218	6.68754637470463	6.59859456254212	6.69685402857635	6.65572812668814	6.44544458405997	6.26553919080589	-0.349779011437742	0.138560110997756	0.414119317038113
Merged-chr15-100604723-4	chr15	100604570	100604770	+	946.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4686.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	4.51987880294702	4.56591875155981	3.78478984074069	4.3672611063369	4.33266717857362	3.97267632053909	4.11208012574761	4.75499988937294	-0.0345832467571775	0.942064499316248	0.979058454594117
Merged-chr10-9907692-3	chr10	9907575	9907775	+	952.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6635.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	4.26326333947567	4.26909100780485	4.07695811252006	4.66184182841495	3.966887554506	4.25143204497654	4.20107235402591	4.02340044398453	-0.614421836487426	0.1520160696424	0.435896601552091
Merged-chr6-135087935-3	chr6	135087871	135088071	+	768.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22309.0	NM_181444	232431.0	Mm.23575	NM_181444	ENSMUSG00000046733	Gprc5a	Rai3|Raig1	G protein-coupled receptor, family C, group 5, member A	protein-coding	2.70466686574144	2.9357017670288	2.91826252604431	2.77969163899753	2.88644369016584	3.0292476868174	3.43385629575103	3.21024525354052	1.31477562992101	0.0320339170531572	0.174884352042236
Merged-chr4-141425877-3	chr4	141425790	141425990	+	729.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013868)	TTS (NM_013868)	5111.0	NM_013868	29818.0	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	3.0630328686037	3.35292737207617	3.32289398369974	3.20698212946681	3.1449777135527	3.49645570469216	3.57263750887742	3.67873775782434	0.844513838380448	0.122428929064444	0.387753347952214
Merged-chr7-100121052-4	chr7	100120995	100121195	+	970.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133692, intron 1 of 11)	intron (NM_133692, intron 1 of 11)	405.0	NM_133692	67967.0	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	4.9604534416111	5.17721746589389	5.15966760949488	4.7912381199403	5.2884871709352	4.67831266539703	4.74666168012779	5.40467258685638	0.105503911510999	0.76974409982087	0.909839341090846
Merged-chr5-77373011-4	chr5	77372911	77373111	+	939.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008048, intron 1 of 4)	intron (NM_008048, intron 1 of 4)	35034.0	NM_001159518	29817.0	Mm.233470	NM_008048	ENSMUSG00000036256	Igfbp7	AGM|Fstl2|Mac25	insulin-like growth factor binding protein 7	protein-coding	5.0777561665446	5.90961499981716	5.40766512655298	5.39490045165084	4.83349308351936	4.6748533621283	4.70658772330601	4.96857614687631	-1.29556206271307	0.000204403469607359	0.00370209530869776
Merged-chr12-55361145-4	chr12	55361033	55361233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025373, intron 4 of 6)	intron (NM_025373, intron 4 of 6)	-23089.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	7.27255152689848	7.11480479731626	7.13763506293678	7.04078341208856	6.89357241278936	6.83591413740092	6.65591428063661	6.60363651033003	-0.528188076079259	0.00790951582013188	0.0666773281315602
Merged-chr3-146157619-3	chr3	146157513	146157713	+	883.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	MTE2b|LTR|ERVL-MaLR	7439.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	3.87235311703117	3.67699049070279	3.77101675670185	3.59303259613438	4.09403088016527	3.94370804304137	3.7023870019603	3.96484798096465	0.630439919182447	0.161687821542752	0.45065956654025
Merged-chr11-111093163-4	chr11	111093073	111093273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27009.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	6.5800309201904	6.28427781419245	6.17556507594402	6.4017727388021	6.85261830006366	6.65930535712787	6.62365446448335	6.79299041149541	0.536624734564359	0.0127806721238884	0.094025932079104
Merged-chr12-111433186-4	chr12	111433111	111433311	+	910.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9450.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	4.46256708175847	4.34439285012634	4.08622130588798	4.27455685099505	4.34305729434701	4.8211237400686	4.59489588409465	4.28565015129004	0.518682449081735	0.187094743445406	0.485321309901623
Merged-chr16-22009780-2	chr16	22009682	22009882	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001357424, intron 1 of 15)	CpG	298.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	5.25805535408653	5.33773203852744	4.92520567127899	5.37522362990874	5.62018264595726	5.77436815218475	5.26508585753568	5.88604429514397	0.70547875176636	0.0214108069465673	0.133954454394807
Merged-chr6-35500172-2	chr6	35500072	35500272	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	39716.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	2.8609730906003	2.81116649375877	2.80250528367261	2.86267397072379	2.65155802459347	2.63725050986181	2.73168715225427	2.73942634287567	-0.721794837018023	0.255798619522512	0.567388281053066
Merged-chr3-88719171-4	chr3	88719058	88719258	+	957.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028056, intron 3 of 5)	intron (NR_028056, intron 3 of 5)	2304.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	4.44416791594669	4.55968868037528	4.77057290773977	4.43917759985116	4.77483830501492	4.57627230319045	4.88256253107113	4.90331245199385	0.517443508534848	0.137571092456204	0.412622999157398
Merged-chr5-140388034-6	chr5	140387912	140388112	+	858.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	1296.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	4.48828205715522	4.14989791941312	4.20557931184481	3.9138095955433	4.15919645168495	4.33250895496873	3.99365681294169	4.29051690304903	0.0193151002199359	0.963779626171199	0.98713389468652
Merged-chr4-142076046-4	chr4	142075876	142076076	+	947.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-8322.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	3.16131861493759	3.07455824015917	3.02582808118655	3.10880968455424	3.73755393236313	3.51808892462611	3.49563374361089	3.95383292304501	2.19111383820209	6.9286792364131e-05	0.00148816071022525
Merged-chr1-190929122-2	chr1	190929022	190929222	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357133, intron 1 of 8)	intron (NM_001357133, intron 1 of 8)	300.0	NM_001357133	52477.0	Mm.289914	NM_021421	ENSMUSG00000026634	Angel2	2610307I21Rik|5730410O10Rik|AI845692|D1Ertd396e|D1Ertd654e	angel homolog 2	protein-coding	4.57968660997448	4.7285569601095	5.31659430934799	4.68655569578171	4.66840918526042	4.66993931491714	4.42402642464022	4.95072315166406	-0.337288836870244	0.381653920085295	0.683861748681093
Merged-chr8-56064273-4	chr8	56064140	56064340	+	755.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080438, intron 5 of 9)	B4A|SINE|B4	123415.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	3.60737965112952	3.329386957552	3.4032307512353	3.46530469038517	3.33586292220648	3.57273918477044	3.15004521795259	3.22350344834355	-0.441591466402314	0.408596119525303	0.704388708563461
Merged-chr10-111412159-3	chr10	111412056	111412256	+	841.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61071.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	3.07324166645019	3.16264834407244	3.38317980096185	3.66068310063369	3.40521689677213	3.43932441399826	3.42335567205926	3.32511372491633	0.143934184577937	0.800276780052145	0.92302919850488
Merged-chr15-103549657-4	chr15	103549546	103549746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-11654.0	NM_021391	58200.0	Mm.143788	NM_021391	ENSMUSG00000022490	Ppp1r1a	0610038N18Rik|I-1	protein phosphatase 1, regulatory (inhibitor) subunit 1A	protein-coding	5.57709781418047	5.5091044411437	5.84802180408391	5.66907106588032	5.68017633247596	5.5795646672177	5.81837409981385	5.72854491535243	0.0821291619403217	0.752963055288998	0.902713603306311
Merged-chr2-169928149-4	chr2	169928043	169928243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35044.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	7.18792783317146	6.39940321247736	7.36706476162307	7.29851109637144	6.8662591495329	6.64083840959363	7.19465561955784	6.51205647674051	-0.395642637420934	0.150332163522548	0.4329904560923
Merged-chr17-65769610-4	chr17	65769503	65769703	+	781.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	3149.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	3.42937203306092	3.35407705743685	3.11427766258812	3.16439979777667	3.55789197971828	3.70655949245595	3.62082693267993	3.42795236498049	1.08147983905755	0.0345137233823167	0.183804269597508
Merged-chr17-73035341-6	chr17	73035207	73035407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72678.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	5.0880460917328	4.9591749143888	5.32097117010114	5.4867522767447	5.50768727286821	5.43414673665727	5.61190030866168	5.46034021837257	0.453060080707785	0.133964807136202	0.407551438524072
Merged-chr10-69212216-2	chr10	69212116	69212316	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081347)	promoter-TSS (NM_001081347)	-441.0	NM_001081347	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	4.2748818423878	4.41986511409842	3.97205249694187	4.08987666897345	4.4551892036496	4.53369648915556	4.46220745637794	4.22700486964464	0.549512329409862	0.163759302078579	0.453530988494127
Merged-chr1-54523900-4	chr1	54523811	54524011	+	992.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163314, intron 12 of 26)	intron (NM_001163314, intron 12 of 26)	33773.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	5.68421116344001	5.77218387243428	5.44436586818548	5.90878989000454	5.83210927180478	5.17408856012438	5.32635161507396	5.38030247573237	-0.429062634938177	0.16291356256785	0.452439503317088
Merged-chr12-95747057-4	chr12	95746947	95747147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	54821.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	6.99856676639088	7.06946453651214	6.70577813025846	7.1715562159005	6.95420559957618	7.01733212340629	7.15975905348644	6.89082374375082	-0.00340053754870514	0.986750205008618	0.995166879327663
Merged-chr13-5420003-3	chr13	5419909	5420109	+	991.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	438083.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	4.69082560686188	3.99328428875073	4.84878778480573	4.67676201960102	3.97421896821512	4.17788314500422	4.3692751902179	4.04847671636906	-1.05965101147475	0.0166718443404903	0.113057833493284
Merged-chr4-126086223-4	chr4	126086136	126086336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172701, intron 7 of 9)	intron (NM_172701, intron 7 of 9)	-10417.0	NM_001163266	116748.0	Mm.41865	NM_138721	ENSMUSG00000050188	Lsm10	-	U7 snRNP-specific Sm-like protein LSM10	protein-coding	6.92329692700477	7.52554161656892	6.74029682601122	6.57008208697258	7.07021434620561	7.08828339840941	7.07227253024536	6.6729856588934	-0.00356360360655541	0.989226161560954	0.995660698733681
Merged-chr7-38108471-2	chr7	38108355	38108555	+	951.5	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007633)	promoter-TSS (NM_007633)	-965.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	3.94312952430405	3.61563922308643	3.49156207733656	3.64902898363026	3.69293046891474	3.54474931217039	3.74632211911063	3.65864414238543	-0.0533948925285721	0.911322672481042	0.96695373445261
Merged-chr18-34930466-4	chr18	34930384	34930584	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144866, intron 2 of 10)	intron (NM_144866, intron 2 of 10)	1519.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	4.69482580488293	4.72775172996907	4.8474187147048	4.60463828405927	4.89428609733717	4.70194286096836	5.02069096104421	4.97959238447535	0.402088117982907	0.222453696402264	0.530502983049462
Merged-chr3-152397156-4	chr3	152397119	152397319	+	976.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287139, intron 1 of 13)	intron (NM_001287139, intron 1 of 13)	535.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	4.40342465025729	4.70267874224611	4.61679015921118	4.80379558679908	4.48878058643985	4.22005150108333	4.80887456868634	4.72608551501355	-0.154661232805171	0.684551254979648	0.870830646235761
Merged-chr9-44407425-8	chr9	44407221	44407421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024266)	promoter-TSS (NM_024266)	227.0	NM_021789	60409.0	Mm.29814	NM_021789	ENSMUSG00000032112	Trappc4	1500017G03Rik|AI303617|HSPC172|PTD009|Sbd|Sbdn|Sdcbp2|TRS23	trafficking protein particle complex 4	protein-coding	6.32955787502663	6.48439762366933	6.64271901467895	6.02736807935872	6.17041536418957	6.8319950485464	6.51873571295592	6.28832764192071	0.134934775975327	0.610593587652964	0.831814034830111
Merged-chr13-22049876-3	chr13	22049802	22050002	+	810.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	6672.0	NM_178198	319183.0	Mm.371766	NM_178198	ENSMUSG00000069300	Hist1h2bj	-	histone cluster 1, H2bj	protein-coding	3.14862810223715	3.35856351230118	3.29124680652342	3.63819492460558	3.48871255073549	3.86727952567707	3.90620346108598	3.88004038547556	1.26270116147923	0.023471592174838	0.14222222349645
Merged-chr11-105447907-3	chr11	105447821	105448021	+	633.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039242, intron 3 of 5)	intron (NM_001039242, intron 3 of 5)	8814.0	NM_172568	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	3.42566428599933	3.61959904150593	3.53702840421126	3.48116651253987	3.24288796547993	3.54079712019149	3.57417653021246	3.53503748386346	-0.14849814469985	0.768598299423633	0.90939721515425
Merged-chr8-106148455-3	chr8	106148349	106148549	+	981.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1905.0	NM_133792	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	4.24083725477545	4.15743875440773	4.54226130879159	4.37834271465235	4.58275101400895	4.63431728439323	4.59439673433947	4.08544951309045	0.361163189536723	0.362840468844619	0.668049629484881
Merged-chr1-152682738-4	chr1	152682733	152682933	+	995.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-57616.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.02948025967868	5.12109809088099	4.77695173398766	4.918744596529	5.01431981612684	5.02891613906915	4.8685112420851	4.92452869573042	-0.00760562032899617	0.980851915453566	0.99298505811204
Merged-chr13-104178774-4	chr13	104178676	104178876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361539)	promoter-TSS (NM_001361539)	-63.0	NM_001361538	81003.0	Mm.244190	NM_030731	ENSMUSG00000021712	Trim23	6330516O20Rik|AI450195|Arfd1	tripartite motif-containing 23	protein-coding	7.86072289569099	7.75498633062823	7.58335158671658	7.73148099559156	8.02940871296716	7.56294696748948	8.17317738976396	7.92808606122879	0.273347441636051	0.148899896973788	0.430800169364166
Merged-chr3-79854639-4	chr3	79854541	79854741	+	938.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11979.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	4.23938576226286	4.59074945031622	4.14024233020888	4.5304662130355	4.56100873770849	4.31732844045794	4.51739748832949	4.28458241835402	0.0684982747010628	0.861971973355669	0.947922797859918
Merged-chr3-38484987-4	chr3	38484902	38485102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167883)	promoter-TSS (NM_001167883)	-186.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	8.89689637768691	9.21439308297511	9.08550138392446	9.04107001412324	9.19454994841797	9.11814481394955	9.27904830481816	8.94965779040893	0.0953487659382208	0.53535488329546	0.789680348939749
Merged-chr17-71286131-4	chr17	71286039	71286239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	24872.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	7.09781960694251	6.96515922231808	7.49265004652044	7.72257709470297	5.72527427530221	6.51253304661801	6.73023377086673	6.49998545166962	-1.33510808580428	3.44826965324218e-06	0.000106391151126192
Merged-chr6-72107976-4	chr6	72107889	72108089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	10381.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	5.49662214192293	5.16276712142087	5.57775665572852	5.91272590718675	5.51175181544231	5.25730634725198	5.67193204277057	5.3478177999123	-0.211799024184448	0.500594318932021	0.768854717487967
Merged-chr8-13677121-4	chr8	13677003	13677203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	CpG	484.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	5.69795837681719	5.49908760610501	5.62212519114345	5.31949148869234	5.59904859492727	6.03463568621183	5.69444853923113	5.76726530978563	0.420553739459874	0.127001606728825	0.396432371413895
Merged-chr19-56774560-4	chr19	56774470	56774670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39113.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	7.68846972815044	7.18605530025053	8.00974804751626	8.04867524587273	6.82364507637438	6.53971889118781	7.41397148343222	7.01305853028269	-1.06193808763558	6.62936039107905e-05	0.00143513151848119
Merged-chr5-34210424-4	chr5	34210327	34210527	+	868.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 8 of 12)	intron (NM_001015039, intron 8 of 12)	-22717.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	4.31952399576461	4.36491586346981	4.12749453221232	4.37402197561942	4.68567810958962	4.35406695393892	4.38674939347322	4.40392832656651	0.391451491483925	0.305168767764534	0.617656374065083
Merged-chr1-5508614-3	chr1	5508521	5508721	+	924.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-79872.0	NM_001204371	18387.0	Mm.7977	NM_011011	ENSMUSG00000025905	Oprk1	K-OR-1|KOR|KOR-1|MSL-1|Oprk2|R21	opioid receptor, kappa 1	protein-coding	3.94212727815493	3.82138381042226	3.98750957885307	3.81915260801509	3.49979654071399	3.4972415045987	3.73082855442521	4.0281402351682	-0.552117822981015	0.252979223649939	0.564229120767656
Merged-chr12-106030626-4	chr12	106030527	106030727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029843, intron 1 of 13)	intron (NM_001029843, intron 1 of 13)	20364.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	6.22491245208808	5.60712664007562	5.932118680854	6.23856393463404	6.1621421824142	6.26323325043608	6.23078555456379	6.27645477347087	0.299157507535171	0.246222815513433	0.557474832541212
Merged-chr9-108049183-4	chr9	108049084	108049284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357682)	promoter-TSS (NM_001357682)	-80.0	NM_177910	331026.0	Mm.22554	NM_177910	ENSMUSG00000070284	Gmppb	AI317178|E430010H19	GDP-mannose pyrophosphorylase B	protein-coding	8.58641752787623	8.73077139829741	8.34908866231173	8.61767367312496	8.63205398340369	8.50415777860842	8.63306185250126	8.51584127026652	-0.00879564587568331	0.95530425348095	0.984075265351039
Merged-chr3-87929575-2	chr3	87929475	87929675	+	813.083374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177663)	promoter-TSS (NM_177663)	620.0	NM_153562	229503.0	Mm.296008	NM_153562	ENSMUSG00000004896	Rrnad1	-	ribosomal RNA adenine dimethylase domain containing 1	protein-coding	2.79221306903161	3.41177582167619	3.11260075199876	2.75891472651769	2.86082916295096	3.04014027425724	3.04277896338561	2.99213610827751	-0.249984377326516	0.697149852709892	0.877632465289818
Merged-chr1-151269930-4	chr1	151269827	151270027	+	923.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74559.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	5.43449894451465	4.91421558225271	5.38317559569879	5.27893848506169	5.0241926132537	5.47236016008644	4.71409429114293	4.8180614521084	-0.427526950737935	0.221781427748394	0.529862056379114
Merged-chr11-94236235-4	chr11	94236140	94236340	+	918.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_181819, exon 2 of 2)	3' UTR (NM_181819, exon 2 of 2)	6339.0	NM_181819	278507.0	Mm.342216	NM_181819	ENSMUSG00000044177	Wfikkn2	2610304F08Rik|AY100450|Gasp1|WFIKKNRP	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding	4.77368685988368	4.62480345019998	4.41495794652054	4.40476263100632	4.51892649447649	4.90746771794225	4.56583505899704	4.69979287799498	0.267551876916928	0.46228429834226	0.743832856470912
Merged-chr6-54729948-4	chr6	54729846	54730046	+	962.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48322.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	4.97882784006325	5.36828604200733	5.11631180370002	4.2452016148793	5.21255786181731	5.38307690961348	5.05837268608964	5.14472159816781	0.419996168938023	0.28023169879505	0.592308919118337
Merged-chr17-88551677-4	chr17	88551566	88551766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 7 of 21)	intron (NM_028658, intron 7 of 21)	21542.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	6.97441514918133	6.97074240338937	7.13117511738523	7.02360689298396	6.72043512741519	6.91556338831033	7.19234294227158	7.06863795910934	-0.064798015705787	0.749129726635392	0.901210731012369
Merged-chr15-100131874-3	chr15	100131770	100131970	+	801.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 2 of 37)	intron (NM_001159361, intron 2 of 37)	-22526.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	3.75067160432608	3.83938128709816	3.33676443746833	3.39438250149595	3.70077025064748	3.02076319858559	3.19859459372115	3.39469854911414	-0.785221446243021	0.20214167628924	0.50461441050349
Merged-chr9-70261867-3	chr9	70261758	70261958	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	54508.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	5.0395216427724	4.94198407498402	4.50793075826145	4.96049911915995	4.12667111203255	3.94676990872773	4.10950763577881	4.17810850880951	-1.85623942224363	4.9066485916465e-06	0.000145642343663389
Merged-chr2-132575935-2	chr2	132575835	132576035	+	921.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355651, intron 1 of 19)	intron (NM_001355651, intron 1 of 19)	2313.0	NM_001291050	74182.0	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	3.3260670772051	3.04712593472288	2.99606275272627	3.66339812607615	3.22001855440375	3.65924433505984	3.52652567921129	3.43674933384491	0.57292570606503	0.352739050879559	0.659679630621423
Merged-chr7-116476521-4	chr7	116476413	116476613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27856.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	6.55684002889174	6.62572319653698	6.66877224304421	6.43063852540766	6.99224768020118	6.76726141687378	6.86792805069376	6.48539540846537	0.336235473459098	0.122321342449476	0.387557421734546
Merged-chr17-12758158-4	chr17	12758075	12758275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	11531.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	7.60796726492315	7.66970458559002	7.61792443474563	7.5364180400537	7.71619093071764	7.74218098636745	7.63123159105682	7.62131378432991	0.0981792135344518	0.550007198695308	0.798290458920767
Merged-chr7-45716250-4	chr7	45716146	45716346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172561, intron 1 of 5)	intron (NM_001172561, intron 1 of 5)	-1039.0	NM_020011	56632.0	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	7.62589143922905	7.48703901124208	7.8825321762472	7.86645505630728	7.47357230635902	7.31862586985478	7.7197549544516	7.79031454086481	-0.185893021693373	0.346713293076608	0.654902886922482
Merged-chr2-25534389-2	chr2	25534289	25534489	+	834.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009422, intron 4 of 10)	intron (NM_009422, intron 4 of 10)	12551.0	NM_001290413	22030.0	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	3.82096528712626	3.66197718953946	3.62099727329639	3.00143960039015	3.94128547107032	3.62632473153618	3.49440395095277	3.72292153438872	0.463575146212237	0.412013479851181	0.70726645326551
Merged-chr18-54832011-5	chr18	54831879	54832079	+	717.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	158201.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.52666874064035	3.95422895388108	3.5860264451198	3.67895248612228	3.64340669704773	3.70313064732843	3.68165552295547	3.97756381941692	0.167462724202267	0.726735124576495	0.891264337092642
Merged-chr10-128673984-4	chr10	128673874	128674074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173733)	promoter-TSS (NM_173733)	-56.0	NM_173733	211389.0	Mm.23352	NM_173733	ENSMUSG00000049858	Suox	SO	sulfite oxidase	protein-coding	6.74933174974942	6.57838908393188	6.90302676822273	7.25686036123646	7.01789992171988	6.68566671675188	6.96792559780784	6.57224980059563	-0.113577152865462	0.639884772173598	0.847798680126239
Merged-chr15-96588814-4	chr15	96588733	96588933	+	944.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166456, intron 8 of 15)	intron (NM_001166456, intron 8 of 15)	53129.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	4.92914837383948	4.93424571415318	5.37255311103828	5.64631845490098	4.90860954944582	4.72275170397236	5.2913060138565	5.06942059310146	-0.488846858572069	0.177536469298079	0.472954390065794
Merged-chr15-5143802-6	chr15	5143707	5143907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355640)	promoter-TSS (NM_001355640)	-54.0	NM_001013367	105787.0	Mm.207004	NM_001013367	ENSMUSG00000050697	Prkaa1	AI194361|AI450832|AL024255|AMPKalpha1|C130083N04Rik	protein kinase, AMP-activated, alpha 1 catalytic subunit	protein-coding	6.29201272169291	6.04103846970179	5.77405007499905	5.59306799600229	6.05535502963491	6.07237654590951	6.20897996662959	5.66301573901056	0.122912024910476	0.666404109052625	0.862000851460164
Merged-chr2-57297706-4	chr2	57297594	57297794	+	907.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010274, intron 3 of 16)	intron (NM_010274, intron 3 of 16)	59312.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	4.89259333121907	5.67394364017202	4.93189968330518	4.68737736938364	5.42905432352911	5.14637441820679	5.2666991431982	4.89014889494581	0.184912426834059	0.627151345237588	0.841010674704992
Merged-chr2-52073366-2	chr2	52073266	52073466	+	927.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355414, intron 2 of 35)	CpG-8094	529.0	NM_175238	51869.0	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	4.1407081073219	3.84345618199311	3.90672792167591	3.4485238329632	4.19518256279928	4.08140472986039	3.78446971789587	4.22151887075536	0.652714712399393	0.171237696541947	0.464360256101769
Merged-chr7-30552398-4	chr7	30552279	30552479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183321)	promoter-TSS (NM_183321)	-107.0	NM_183321	333193.0	Mm.34885	NM_183321	ENSMUSG00000036864	Proser3	-	proline and serine rich 3	protein-coding	8.29196836592802	8.23506820877257	7.9830207139438	8.32419574417047	8.08403448171979	8.2089993168634	8.02641905869715	8.14239178452027	-0.134283175473393	0.411483568597457	0.706942536257065
Merged-chr2-3050242-4	chr2	3050151	3050351	+	766.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	-63973.0	NM_001310434	269233.0	Mm.23044	NM_001081161	ENSMUSG00000050530	Fam171a1	9630050M13Rik|AA409679	family with sequence similarity 171, member A1	protein-coding	4.07837978309002	3.82578577216275	4.66292970375517	4.22694539534364	4.41634116032767	4.40312413552582	4.25551624399747	4.55539610806434	0.429099314942827	0.319180380554576	0.631064145648569
Merged-chr8-70695428-4	chr8	70695323	70695523	+	995.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2316.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	5.37141880455532	5.36754501919361	5.37234427554735	5.18360565579813	5.43806618917378	5.1474222454282	5.22525993625239	5.62850632391414	0.11246800425736	0.702114015583754	0.880010098877197
Merged-chr2-118540429-4	chr2	118540316	118540516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	4171.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	7.0319680564392	6.83798150504886	6.876913576945	6.70577695348423	7.3568477419657	7.18519803890207	7.04555983606218	7.16708918038088	0.473480331151069	0.0159375420430138	0.109394243498523
Merged-chr12-99902223-3	chr12	99902105	99902305	+	624.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028354, intron 5 of 15)	(TTTTG)n|Simple_repeat|Simple_repeat	17690.0	NM_028354	104884.0	Mm.312323	NM_028354	ENSMUSG00000021177	Tdp1	2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1	tyrosyl-DNA phosphodiesterase 1	protein-coding	3.2274503807537	3.57704389116846	3.15774695549864	3.12551821416312	3.62944504210095	3.85574899893457	3.84801378719779	3.47509824685492	1.41596294254915	0.0073020260793905	0.0627870154995091
Merged-chr9-13298999-4	chr9	13298906	13299106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52050.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	5.98348648563117	6.03921141651284	6.14709799636048	6.46788837069494	5.81532134178272	5.69851880478268	5.76845590382001	5.74250668077471	-0.686799095389322	0.00786964662122522	0.0664476366372704
Merged-chr11-90242029-4	chr11	90241959	90242159	+	801.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-7417.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	4.3200449323769	4.42874253479172	4.09902353886074	4.55279471525509	4.10000585088688	3.89165478532146	4.03289406460539	3.9428595795176	-0.956619086615794	0.0238062459023648	0.143577764538589
Merged-chr2-165317571-4	chr2	165317469	165317669	+	934.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	-1218.0	NM_001302754	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	5.44338633174833	4.73591503330654	5.2829686855792	5.83168607795719	4.73790556800348	4.60751660753718	5.07263385062635	5.02616975103354	-0.985256049418075	0.0104571827623842	0.0815616712517798
Merged-chr19-31082784-4	chr19	31082665	31082865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031249)	promoter-TSS (NM_031249)	-76.0	NM_031249	83410.0	Mm.22031	NM_031249	ENSMUSG00000053536	Cstf2t	64kDa|C77975|tCstF-64|tauCstF-64	cleavage stimulation factor, 3' pre-RNA subunit 2, tau	protein-coding	8.72704603868678	9.0060022940907	8.87544438221847	9.0946306954787	8.94872637531753	8.77350833222545	9.04730579375387	8.77383720241855	-0.0566214144629098	0.724419387350275	0.890222153451283
Merged-chr2-84653556-3	chr2	84653458	84653658	+	801.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355064, intron 1 of 18)	B2_Mm2|SINE|B2	-2818.0	NM_001355066	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	4.0746526807102	3.73032094656561	3.6210628589991	3.0226383087946	3.70566065198026	4.11429976309684	4.28598006394451	3.67781133232702	0.844982171449377	0.140832016092064	0.417400152957072
Merged-chr7-133635746-4	chr7	133635648	133635848	+	927.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1927.0	NM_178115	214764.0	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	3.9769395798436	4.10556146356637	4.4077220026353	4.42183179182823	4.51359960985782	4.15731607691136	4.53870454549908	4.36364316049887	0.363728962293359	0.374012650746125	0.677397508129094
Merged-chr4-107921514-3	chr4	107921382	107921582	+	888.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009949, intron 1 of 4)	intron (NM_009949, intron 1 of 4)	2107.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	3.68573385409415	3.54244981063217	3.35386064200003	3.85542100508931	3.35700395618615	3.6463819696381	3.51707873336492	3.52880572249616	-0.403152746571358	0.433836347425698	0.723256357491443
Merged-chr11-98961160-4	chr11	98961088	98961288	+	938.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001176528, intron 1 of 7)	intron (NM_001176528, intron 1 of 7)	717.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	3.50925520826262	3.45578189872694	4.01894979400547	3.8525461197739	3.76280569082908	3.85600373523042	3.55724124465852	4.20413237942523	0.393006148256325	0.447935956838808	0.73332468018769
Merged-chr2-153234944-3	chr2	153234840	153235040	+	925.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018807, intron 2 of 2)	Charlie15a|DNA|hAT-Charlie	6418.0	NM_018807	54711.0	Mm.103199	NM_018807	ENSMUSG00000051413	Plagl2	AU018672|AW552839|mKIAA0198	pleiomorphic adenoma gene-like 2	protein-coding	3.25405094045621	3.49225383843563	3.57556399690095	3.06727053547689	4.21660739997771	3.91011814170879	3.61652298994076	3.87819312791771	1.8241443027395	0.000463529227304173	0.00725292303149785
Merged-chr16-36692647-4	chr16	36692527	36692727	+	886.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1351.0	NM_001285788	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	4.30422291243073	4.31638523043199	4.39200830480243	4.05659604105991	4.69006620133831	4.18300648226166	4.32962313850672	4.54712179361727	0.481077598001864	0.225737793661007	0.534241429840117
Merged-chr2-32606415-2	chr2	32606315	32606515	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110347)	promoter-TSS (NR_110347)	-570.0	NM_001289547	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	3.32229586922927	3.48198547150807	3.43519420499134	2.99032643943966	3.3137454882355	3.43728543934899	3.42115903016748	3.43323150309907	0.319667548139257	0.558156659496127	0.803013031815704
Merged-chr4-55650390-4	chr4	55650348	55650548	+	719.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117973.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	2.98962583904872	2.72310021453649	2.92762551765852	3.00095658004248	3.14640529310211	3.09871716691613	3.03804619054572	3.04789204999045	0.68458132868153	0.244063973682504	0.555147463737798
Merged-chr14-19823928-4	chr14	19823842	19824042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026528)	promoter-TSS (NM_026528)	-119.0	NM_026528	68045.0	Mm.21932	NM_026528	ENSMUSG00000021807	Rtraf	2700060E02Rik	RNA transcription, translation and transport factor	protein-coding	8.26093608742607	8.19575200702142	8.05992748265973	8.1582314105933	8.18428443598834	8.26373086148885	8.22343165256616	8.23975254702314	0.0716337056207713	0.635588193034347	0.845791321430421
Merged-chr4-32569405-2	chr4	32569304	32569504	+	988.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_026843, intron 1 of 4)	intron (NR_026843, intron 1 of 4)	2258.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	3.32722400801084	2.90788688147706	2.95334996278404	2.84886240753727	2.74648553368159	2.93150564465893	2.81407375612773	3.07034021914483	-0.535153181638042	0.397441775473558	0.695843269866741
Merged-chr17-30005740-4	chr17	30005614	30005814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151443, intron 1 of 4)	intron (NR_151443, intron 1 of 4)	675.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	6.03099029301286	6.77072586295344	6.12146512063059	5.76280549541935	6.45864156620116	6.80479573966903	6.42720048341674	6.25976067879661	0.411912193821507	0.162978161156565	0.452549687022461
Merged-chr19-5490031-2	chr19	5489931	5490131	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007687)	promoter-TSS (NM_007687)	-424.0	NM_007687	12631.0	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	3.86726262369273	4.23490539265737	3.80762238959086	3.41601930602757	4.59003429878424	4.56784623693667	4.16281830318648	4.57651477800651	1.59682882082221	0.000568670078779663	0.00855939258563283
Merged-chr15-99031512-4	chr15	99031382	99031582	+	857.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009448, intron 1 of 3)	PB1D9|SINE|Alu	1591.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	3.61517153043641	3.11573745140468	3.39941574608571	3.16276949555598	3.85691906898495	3.57370917361025	3.38656571527626	3.56284039897821	0.949542796507008	0.0774356870236671	0.300993598004456
Merged-chr5-18036431-4	chr5	18036331	18036531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73861.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	6.83226063186559	6.40677065491944	6.92057372552894	7.07935248426424	6.13516111774038	6.08660983510693	6.67734742145155	6.12084269303538	-0.817090267740373	0.00175852904912607	0.0211686688969634
Merged-chr14-33447294-4	chr14	33447186	33447386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016700)	promoter-TSS (NM_016700)	-128.0	NM_016700	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	8.46023606834674	8.62442692512417	8.6655896996395	8.28057930383206	8.84274602244967	8.82596608066419	8.88532792981499	8.38180593539203	0.299632339688221	0.0985139492381121	0.343994301133918
Merged-chr14-75722240-4	chr14	75722133	75722333	+	901.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177381, intron 15 of 22)	intron (NM_177381, intron 15 of 22)	32260.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	4.29129706438314	4.03201162053296	3.89853820582224	3.92344295132286	4.44706507719523	4.46232953436116	4.35353357515254	4.10753978289304	0.792145753596011	0.0516814897159664	0.236338286480134
Merged-chr4-138028126-1	chr4	138028026	138028226	+	560.0	f0_balb.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	30301.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	3.32159517812689	3.21732108324482	3.2747793438675	3.02925704867188	2.73713747844402	2.61268188410577	2.73523371315897	2.58890233179107	-2.73211266419899	0.000310476639909272	0.00521458630299719
Merged-chr8-125053640-4	chr8	125053553	125053753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174853)	promoter-TSS (NM_174853)	-542.0	NM_174853	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	4.79042121505872	5.0132278959732	4.54456049688573	4.88618847658498	4.73130030882215	4.84786834444976	4.76871279086734	5.14436845552931	0.105659131035054	0.759953681330765	0.905851390428209
Merged-chr16-50630640-4	chr16	50630558	50630758	+	863.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040566, intron 3 of 4)	intron (NR_040566, intron 3 of 4)	-39504.0	NM_027046	69339.0	Mm.422869	NM_027046	ENSMUSG00000050685	Ccdc54	1700007N18Rik|AI644412|BB013989|NYD-SP17	coiled-coil domain containing 54	protein-coding	4.10461376700447	4.29489638087057	4.41419860324288	4.27506201533004	4.21996617446963	4.37305313293619	4.22820618450896	4.1515937993922	-0.0827372857758309	0.831891934378107	0.935659887763281
Merged-chr1-91099072-4	chr1	91098975	91099175	+	947.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 10 of 22)	intron (NM_008515, intron 10 of 22)	45631.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	4.92007742725184	4.70060539194231	4.85124005843886	4.7000252484045	4.63841878217007	4.74996059895685	5.08378447475786	4.88325681069838	0.115406732282976	0.733574316957549	0.894541206455181
Merged-chr11-100525132-4	chr11	100525009	100525209	+	798.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134037, intron 1 of 27)	intron (NM_134037, intron 1 of 27)	2891.0	NM_134037	104112.0	Mm.282039	NM_134037	ENSMUSG00000020917	Acly	A730098H14Rik|AW538652	ATP citrate lyase	protein-coding	3.88713758496994	3.74008967875589	3.72650739110523	4.00945753228666	4.04639775281816	3.95654882481783	3.82075516114568	4.19693694306019	0.426021449798267	0.338763623891951	0.648145150521291
Merged-chr10-41868159-4	chr10	41868038	41868238	+	878.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162908, intron 1 of 9)	Lx9|LINE|L1	-19301.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	3.43895636698334	3.70584758467971	3.90204405593317	3.98817184052742	4.11993537917931	3.75000745268821	3.97834093705453	4.08082165520023	0.570991403956792	0.236100829493807	0.546101444075659
Merged-chr8-84236191-4	chr8	84236100	84236300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172503, intron 1 of 13)	intron (NM_172503, intron 1 of 13)	842.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	6.30566403656845	6.80576107066767	5.73149904201244	5.56516797799758	6.60716651114814	6.79228458928806	6.44623764320218	6.05798454533794	0.454026121305485	0.179528118614808	0.475749514329241
Merged-chr17-84354222-4	chr17	84354114	84354314	+	871.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	L1M4c|LINE|L1	111994.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	3.66210031965575	3.48137911226587	3.71677526927393	3.6693298114373	3.91578269191426	3.72381937099119	4.10227217017921	3.71468234406706	0.708548433145726	0.126140863080768	0.394662878823119
Merged-chr18-33431562-3	chr18	33431469	33431669	+	860.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	32065.0	NM_001267717	27528.0	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	3.7961044175562	4.00692578829825	4.40727945487217	4.3243622851584	3.33862233827824	3.33799799390445	3.72786004439185	3.36863964163339	-2.23539688729594	4.21856324573102e-05	0.000975546176958702
Merged-chr13-41487254-6	chr13	41487125	41487325	+	917.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001111324, exon 1 of 8)	5' UTR (NM_001111324, exon 1 of 8)	135.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	5.30759315887613	5.03466708930365	5.1102362013987	4.82836742066761	4.5555532898369	5.04952589846113	4.56560505259157	4.97759670314502	-0.545604490809411	0.124874143759511	0.392224226705601
Merged-chr7-79696733-4	chr7	79696650	79696850	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029835, exon 22 of 22)	exon (NM_029835, exon 22 of 22)	17436.0	NM_010626	16576.0	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	4.93012738112701	4.84545506030568	5.4496568219247	5.16080039984714	5.09791933005098	5.17935403007478	5.29132278621552	4.92766529049641	0.0221390413109254	0.945971160181626	0.980705543572023
Merged-chr3-135439354-4	chr3	135439254	135439454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030689)	promoter-TSS (NR_030689)	228.0	NM_001356597	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	8.18508472014157	8.26720834996565	8.38672179520107	8.39710090526099	8.4486133590998	8.26063747516159	8.79856073647618	8.39178788810449	0.224205544451531	0.202356795766895	0.504803363329893
Merged-chr11-28188346-4	chr11	28188238	28188438	+	951.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	395986.0	NM_001166661	216613.0	Mm.93759	NM_181577	ENSMUSG00000032878	Ccdc85a	-	coiled-coil domain containing 85A	protein-coding	4.78059271263774	4.84184527255332	4.78137491916131	4.99900091260387	4.63025423384818	4.62602933568702	4.56244058017298	4.8143706644237	-0.432589066115129	0.201770601569132	0.504206910865372
Merged-chr3-104511226-2	chr3	104511173	104511373	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025067, intron 1 of 17)	intron (NM_001025067, intron 1 of 17)	645.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	3.29616392101701	3.55122758417747	3.59414225660356	3.39996302708256	3.8465640134631	3.59890477484553	3.46997666312198	3.83344480073705	0.762862498790665	0.122708472856519	0.388241382826785
Merged-chr2-117962882-5	chr2	117962745	117962945	+	893.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	MTD|LTR|ERVL-MaLR	140917.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	3.95246894044918	3.85310282840181	4.78874892211485	4.41830576505649	3.82485060730415	4.28822924526134	3.82184443380657	4.59761170707823	-0.319495593923796	0.537583360136144	0.791163982035162
Merged-chr3-152152158-2	chr3	152152058	152152258	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016867, intron 1 of 5)	intron (NM_016867, intron 1 of 5)	13742.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	2.84758132766576	3.04581717650015	3.15915093683222	3.10093725474463	3.07888283862807	3.15226431950231	3.09100538523287	3.04186719280258	0.175159953931719	0.759247008184706	0.905521737162233
Merged-chr15-98092816-2	chr15	98092716	98092916	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163488, intron 1 of 22)	CpG	227.0	NM_001163488	18642.0	Mm.272582	NM_021514	ENSMUSG00000033065	Pfkm	AI131669|ATP-PFK|PFK-A|PFK-M|Pfk-4|Pfk4|Pfka|Pfkx	phosphofructokinase, muscle	protein-coding	3.03401385662089	2.98596494240258	3.09565147620242	2.67149102927453	2.97044749513287	3.32495692869461	3.14144824478652	3.20829261181134	0.893716904821352	0.137638016181162	0.412693725673318
Merged-chr1-124073254-4	chr1	124073183	124073383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27724.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	7.35610487074262	7.16691750812793	7.78711747119045	8.01562390856344	7.27379751150475	7.24885846985293	7.47446342725221	7.14056040474729	-0.460251744330545	0.0503349618752107	0.23278105271409
Merged-chr5-122707586-4	chr5	122707507	122707707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011026)	promoter-TSS (NM_011026)	63.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	7.16617200797005	7.53119901702496	7.00930175946321	6.65529723207592	7.23398815876648	7.28623574197219	7.41537107054574	7.37220628348849	0.280366558430584	0.229792104066126	0.538856256177995
Merged-chr5-64716757-4	chr5	64716634	64716834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86789.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	6.3502272045436	6.28427217940289	6.48018038953873	6.4976999256069	6.98946114579394	7.04402569442187	6.72687224268093	6.78419547583753	0.691105176815046	0.00101299905410441	0.0135827505555763
Merged-chr2-129572766-4	chr2	129572666	129572866	+	984.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20073.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	4.9082000314378	5.20882996450642	5.30532799163668	5.09734437549094	5.48479818212654	5.16000880663409	4.88590319001052	5.08586616336078	0.0944403118318001	0.77131493186899	0.910379161490028
Merged-chr6-83029936-3	chr6	83029852	83030052	+	788.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291799)	TTS (NM_001291799)	3519.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	3.10248214860648	3.11699859931455	3.15542054231388	3.07995961987029	2.76791380284156	2.83875345374133	2.65320814077368	2.65867092542209	-1.82521450845506	0.00597424047600728	0.0540674460065762
Merged-chr11-69395442-2	chr11	69395344	69395544	+	825.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_030083)	promoter-TSS (NM_030083)	-98.0	NM_001045525	327951.0	Mm.415669	NM_001045525	ENSMUSG00000044795	Cyb5d1	Gm740	cytochrome b5 domain containing 1	protein-coding	4.96503593718569	4.82797450925944	4.15889495440548	4.31283714446887	5.10766324446168	5.0713590247447	4.94130692253752	5.28509104999433	1.02375706510765	0.00720589933857611	0.0622235483465376
Merged-chr9-13551985-2	chr9	13551885	13552085	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TAG)n|Simple_repeat|Simple_repeat	-68004.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	3.35379831653892	3.08098871971877	3.40447362953066	3.1356103908154	3.16063944531431	3.11209850512183	3.17858994587432	3.00167993632636	-0.493306233501995	0.384141985798758	0.685731113185781
Merged-chr4-134761912-4	chr4	134761830	134762030	+	876.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	6074.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	4.20371181737638	4.10693948286102	4.11432114057919	4.14687347209019	4.31026149702976	3.8585639778491	3.89749608620576	4.32558745887355	-0.0420734765608132	0.921476968291825	0.970886721487516
Merged-chr7-120125008-4	chr7	120124914	120125114	+	842.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20277.0	NM_011775	22787.0	Mm.6510	NM_011775	ENSMUSG00000030911	Zp2	Zp-2	zona pellucida glycoprotein 2	protein-coding	3.86232155308123	4.0937292425013	4.15269457310701	4.21121907053714	3.9242702735777	3.98265609907053	3.99888616472954	4.10623283310423	-0.254787311301061	0.546793420643221	0.796555214156745
Merged-chr14-47515240-4	chr14	47515154	47515354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027414, intron 4 of 5)	intron (NR_027414, intron 4 of 5)	42693.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	6.07529949335632	5.98303613753297	5.94848180484318	5.96476115950745	5.93204834759135	5.87955105111729	6.34780854072058	5.69759364999029	-0.00658293670844021	0.979673576038569	0.992727894151009
Merged-chr18-54992057-4	chr18	54991991	54992191	+	993.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 1 of 8)	intron (NM_001360787, intron 1 of 8)	500.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	4.22109222446421	4.64378326362279	4.76801740662737	4.23059709032484	4.4370975114885	4.75660665114604	4.56281278843644	4.69455138106018	0.301744640034372	0.436960370500663	0.725408654678613
Merged-chr1-153790852-1	chr1	153790752	153790952	+	625.333313	f0_balb.idr	intron (NM_001243223, intron 17 of 20)	intron (NM_001243223, intron 17 of 20)	41426.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	3.27486175960952	3.25125086772946	3.38236052432904	3.44461604940633	2.85635702474412	2.91949306381118	3.31637093362914	3.27351004594554	-0.931051447178321	0.120529359516222	0.384336496774716
Merged-chr9-96119295-4	chr9	96119210	96119410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177352)	promoter-TSS (NM_177352)	-119.0	NM_177352	235533.0	Mm.213651	NM_177352	ENSMUSG00000041440	Gk5	AV095337|C330018K18Rik|G630067D24Rik	glycerol kinase 5 (putative)	protein-coding	8.27461303803189	8.38046137213622	7.96519561539416	8.1406575829463	8.38032595647767	8.31103358081172	8.28108382795264	7.93809555802624	0.0534365495011404	0.767333797750413	0.909004900573458
Merged-chr7-81523459-4	chr7	81523362	81523562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045299)	promoter-TSS (NR_045299)	-88.0	NR_045299	100504421.0	Mm.217071	NR_045299	ENSMUSG00000097277	2900076A07Rik	WI1-1616M8.2	RIKEN cDNA 2900076A07 gene	ncRNA	6.51674595246856	6.61527285975279	6.19420833068824	6.33944194211994	6.89675115408787	6.66070554870063	6.80710219105069	6.78405771836151	0.535762638049127	0.0123591701375309	0.091675007421771
Merged-chr16-38763701-4	chr16	38763621	38763821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019804, intron 5 of 6)	intron (NM_019804, intron 5 of 6)	21462.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	6.58852284260647	5.83754891973223	6.69340510780146	7.07810266889473	6.37710428336977	6.09305683354291	6.74130849667157	6.40253264082908	-0.303332383958776	0.324595077089994	0.636161998108012
Merged-chr6-4811408-3	chr6	4811312	4811512	+	780.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64106.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	3.14033140936334	3.20094024575845	3.42892437910405	3.19728011703379	3.12787531632394	3.25274616303673	3.19219481831591	3.66136820605146	0.288674386752881	0.605117530829702	0.828698063423653
Merged-chr1-177443236-5	chr1	177443162	177443362	+	913.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355101, exon 2 of 4)	5' UTR (NM_001355101, exon 2 of 4)	911.0	NM_001355100	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	4.03203663564598	3.82767829755753	3.98654085483039	3.81569347304597	3.82669783461647	4.01041038105634	4.01483449139875	3.88675788531569	0.0640549692435007	0.882049343505411	0.955548980600445
Merged-chr14-75164051-4	chr14	75163971	75164171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	27646.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	6.02047795032621	5.93175317147671	6.02153943210666	6.27340393894877	6.10594260451159	6.15317612773052	6.5537246524482	6.31420384634682	0.315486223705178	0.202507709742854	0.504949774812113
Merged-chr2-71924244-3	chr2	71924134	71924334	+	896.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	49330.0	NM_001360002	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	3.57116360583511	3.36771659046097	3.86271935165533	2.71879062149189	5.29699400549188	4.77006596607018	5.45140221760955	5.35117665141557	5.36186934978715	2.98839174984748e-20	1.03761334810924e-17
Merged-chr19-57198130-1	chr19	57198030	57198230	+	582.0	f0_balb.idr	promoter-TSS (NM_001290816)	promoter-TSS (NM_001290816)	-499.0	NM_001290816	226251.0	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	2.71931036866442	2.68088018640567	2.99434333583175	2.88301882688007	2.49275294155919	2.47202220842726	2.51437957483091	2.52023929315948	-1.79452436346587	0.0130976439597018	0.0955098225617526
Merged-chr1-163930575-3	chr1	163930473	163930673	+	959.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286003, intron 1 of 13)	intron (NM_001286003, intron 1 of 13)	808.0	NM_028776	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	3.88933642473555	4.06339410011842	4.32366302282889	3.9808261912631	4.21781041805847	4.17573326331327	4.34348182638212	4.39999910462905	0.552510386936164	0.173010299924398	0.46686422165811
Merged-chr11-90250487-3	chr11	90250396	90250596	+	919.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026178, intron 1 of 6)	intron (NM_026178, intron 1 of 6)	1020.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	3.43588419909154	3.06085121883191	3.04766727553792	2.86724299913204	3.26243258912989	3.22269515400513	3.09972163032168	3.22703243247734	0.373431268225483	0.521574698933379	0.781471701856069
Merged-chr2-91097260-3	chr2	91097181	91097381	+	819.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011355, intron 1 of 4)	intron (NM_011355, intron 1 of 4)	603.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	4.08794904925307	4.19839662747638	3.84656421023138	3.60558979240643	3.77790404612878	3.85638554070632	4.15435709952383	3.99472514202764	0.0159062763659246	0.973031132163025	0.990282195228149
Merged-chr11-120571923-2	chr11	120571823	120572023	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011032, intron 1 of 10)	intron (NM_011032, intron 1 of 10)	1330.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	3.38347246055137	3.85654408761177	3.708977618641	3.2430965940964	3.3260287024963	3.61892327684088	3.37167861739429	3.65795398932172	-0.221051430082339	0.684582942316525	0.870839217519815
Merged-chr2-3414435-2	chr2	3414335	3414535	+	928.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355205, intron 1 of 3)	B3A|SINE|B2	4162.0	NM_001355210	104362.0	Mm.2688	NM_008579	ENSMUSG00000026650	Meig1	MLZ-278|Meg1	meiosis expressed gene 1	protein-coding	3.0401822869062	2.64985276998686	2.79805487428115	2.46634137841753	2.73705074303222	3.03700845501093	2.97175488796698	2.98235413557188	0.844422304768911	0.203911038601136	0.506992588255912
Merged-chr6-29522990-4	chr6	29522883	29523083	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3642.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	5.5548181527925	5.34385502736977	5.79119518126372	5.71669974110107	5.37158263148398	5.234260810624	5.24000554772127	5.29433840755846	-0.572504346439554	0.0455371904282217	0.218612858440091
Merged-chr2-152693418-3	chr2	152693304	152693504	+	926.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010376, intron 8 of 11)	intron (NM_010376, intron 8 of 11)	6256.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	3.55173147158218	3.55252485341066	4.00876539628882	3.49364147975471	4.54933987712853	4.31777663342419	4.16915477250426	4.00626633927682	1.7051788702185	0.000217379075735334	0.00389645561112196
Merged-chr19-6340738-3	chr19	6340642	6340842	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291787)	promoter-TSS (NM_001291787)	-418.0	NM_009006	26412.0	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	4.91057825249617	4.71982702967234	4.46480993853631	4.1403619089465	5.08859022539036	4.90328349415141	4.95355906381122	5.18397843735689	0.961567114569385	0.00977961878479168	0.0776826335297426
Merged-chr7-16619049-3	chr7	16618904	16619104	+	890.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136929, intron 1 of 2)	CpG	-4011.0	NM_172739	232906.0	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	3.23460649154303	3.27877656958765	3.29396127634758	3.37771900373639	3.28755019177337	3.21802638136084	3.53802873779593	3.29226019094869	0.130086220167035	0.805064806952622	0.925171083261684
Merged-chr15-100084142-4	chr15	100084031	100084231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 3 of 3)	intron (NR_037311, intron 3 of 3)	45467.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	6.84300650955916	6.74226752744133	6.76222206601254	7.04916398595093	6.56504325349891	6.1955510241499	6.72779179779522	6.65450148132014	-0.443440859561188	0.0467236109577131	0.222234540886005
Merged-chr11-54693917-3	chr11	54693811	54694011	+	967.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252496, intron 28 of 28)	intron (NM_001252496, intron 28 of 28)	93792.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	4.13283074234279	3.88151368747873	3.60051460462672	4.15838586736395	3.70944887028824	3.59088820642255	3.70088762281031	3.8186387884221	-0.767802982579511	0.11011203432225	0.366485761293531
Merged-chr13-48962772-4	chr13	48962680	48962880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033268, intron 1 of 17)	intron (NM_001033268, intron 1 of 17)	5048.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	7.50458914289906	7.34530661361432	8.39308732845533	8.31313786709368	7.38265125215124	7.43883753264167	8.00404329856265	7.88975712770553	-0.351007169798633	0.207194994009381	0.511175781726586
Merged-chr17-6270483-3	chr17	6270385	6270585	+	854.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033178)	promoter-TSS (NM_001033178)	15.0	NM_001033178	77106.0	Mm.381893	NM_001033178	ENSMUSG00000038141	Tmem181a	5930418K15Rik|C76977|Gpr178|Tmem181|mKIAA1423	transmembrane protein 181A	protein-coding	2.42699609942095	2.3682395837958	2.42721133069878	2.0347592149299	2.8875331446017	3.08463858168051	3.23268109761936	3.82200036638921	7.27081886792767	3.47638445647559e-12	3.39897759927852e-10
Merged-chr16-34700392-4	chr16	34700298	34700498	+	949.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172824, intron 5 of 12)	intron (NM_172824, intron 5 of 12)	9782.0	NM_172824	239839.0	Mm.272045	NM_172824	ENSMUSG00000022833	Ccdc14	G630039H03Rik	coiled-coil domain containing 14	protein-coding	4.32812856774561	4.43859414106008	4.4967039901603	4.52455996620716	4.14525902751985	4.15232396360933	4.51410503838726	4.53244033754154	-0.25899221201685	0.504796692744644	0.771033321020386
Merged-chr8-116581474-4	chr8	116581375	116581575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 5 of 6)	intron (NM_029441, intron 5 of 6)	76460.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	7.22370264828208	7.16683604916517	7.3713125982168	7.06005830334163	7.51684748534158	7.39091559986862	7.48283554376179	7.15156684803418	0.265388656664401	0.164257513178867	0.454381311669139
Merged-chr18-46378765-4	chr18	46378666	46378866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66838.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	6.33875467228607	6.08894006179252	6.32188652434381	6.55200771078255	6.00897782388085	6.04868191397896	6.54895499744494	6.33533754437763	-0.145275062858286	0.567039595132234	0.808122532096819
Merged-chr9-103347193-4	chr9	103347049	103347249	+	952.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176979, intron 27 of 27)	RSINE1|SINE|B4	17830.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	3.91512024188361	3.8653365690942	3.9156637977944	3.75428287415238	4.36041766331704	4.50944464342213	4.31917417915296	4.4145797262337	1.40401289181852	0.000395242580677799	0.00638535432290552
Merged-chr18-80413418-4	chr18	80413320	80413520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	-49166.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	5.96702850365274	6.40926906968544	6.62818035630428	7.03251738302747	6.03107551318566	5.0545181145435	5.84307114180174	5.29348144220199	-1.48190520805133	0.00550878657696331	0.0510161227897049
Merged-chr2-156421687-4	chr2	156421591	156421791	+	841.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013510, intron 1 of 21)	intron (NM_013510, intron 1 of 21)	782.0	NM_001291123	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	3.91359460652526	4.17830758026296	4.22603955424665	4.10076500434781	4.00180765824862	3.68738067271234	3.68140132172901	3.91189473233481	-0.753322892226633	0.0949686248997437	0.337196875888081
Merged-chr13-103869091-3	chr13	103868981	103869181	+	716.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 4 of 26)	intron (NM_001005868, intron 4 of 26)	51505.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	3.52188550924228	3.50774283413766	3.52231891467819	3.89414183838108	3.97743401126147	3.96093180605011	3.72761997123122	3.5792314539037	0.546464247453722	0.277193557141905	0.589300206200641
Merged-chr14-48443941-1	chr14	48443841	48444041	+	580.0	f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-2182.0	NM_001310584	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	2.57065834945913	2.90670672782606	2.57087667548801	2.46011213445632	3.15402032709537	3.08178133962143	2.95756164328673	2.84810891454849	1.78947211844692	0.0069670035548825	0.0606759263468716
Merged-chr7-31041811-4	chr7	31041691	31041891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111073)	promoter-TSS (NM_001111073)	48.0	NM_001111073	18301.0	Mm.1870	NM_008761	ENSMUSG00000009687	Fxyd5	EF-8|Oit2|RIC	FXYD domain-containing ion transport regulator 5	protein-coding	6.15256969949898	6.13538197190752	5.90969835061209	6.38822779384731	6.0908962421706	6.20300078120202	6.40786033133339	6.18893929381973	0.0729131878659016	0.765371284819698	0.908220654138999
Merged-chr4-48593047-4	chr4	48592957	48593157	+	944.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021436, intron 1 of 9)	intron (NM_021436, intron 1 of 9)	7883.0	NM_021436	230157.0	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|TR-1|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	4.5868039887605	4.23757522877723	4.66402800303163	4.42562999038343	4.39569820983269	4.67962122489204	4.60452905654476	4.76744400593631	0.291799192652902	0.430943351662417	0.721325279470979
Merged-chr3-37640966-4	chr3	37640859	37641059	+	901.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011896, intron 2 of 2)	CpG-9115	1012.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	4.96356664401653	4.96739384503582	4.6509267632445	5.12499395380567	4.24931248865119	4.1921535767734	4.4169028081714	4.68673917177656	-1.20730642200199	0.00143751026048923	0.0180173521449838
Merged-chr9-42837724-4	chr9	42837632	42837832	+	984.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175481, intron 1 of 20)	intron (NM_175481, intron 1 of 20)	106639.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	5.7122756447447	5.16762176421	6.01040433084139	5.84743121953145	5.56848853274349	5.36688958727048	5.73087050517447	5.18280729163237	-0.405937916292623	0.205230216116878	0.508859472252119
Merged-chr2-159555065-3	chr2	159554960	159555160	+	775.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-392281.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	3.52210154540792	3.19342122052267	3.52260874609727	3.3972985211996	3.37827832240415	3.3505005556252	3.50794294458496	3.35800379787833	-0.0408803481880724	0.936828595168938	0.977136048115616
Merged-chr18-38494883-4	chr18	38494781	38494981	+	854.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75974.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	3.81794500071206	3.7671830351854	3.87007298382996	3.90247132365905	3.91339883771759	4.13640027717946	3.95029509121876	3.81633297491842	0.310832742792453	0.473612539260156	0.751276228650354
Merged-chr1-34468419-7	chr1	34468284	34468484	+	959.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 6 of 14)	intron (NM_011206, intron 6 of 14)	8638.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	3.98851923529536	3.69860170446059	3.69318535010868	3.62719746032573	3.74533202223516	4.06693370959858	3.83327198565553	3.69116560907225	0.256402271109053	0.57933861292913	0.815309880376499
Merged-chr14-46884945-4	chr14	46884812	46885012	+	944.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028966, exon 2 of 12)	exon (NM_028966, exon 2 of 12)	1947.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	4.20663739347953	4.30085872633204	4.20730042496453	4.07555213441872	4.19293469475274	3.93647201646532	3.62034208462626	3.92283278529889	-0.66246468311348	0.141736532191265	0.41884783250682
Merged-chr3-115789295-4	chr3	115789202	115789402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74247.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	6.04364470045642	5.796254485341	6.79466082630269	6.91101504387597	5.81843517287544	5.48722163336834	6.11760891067909	5.97321460735564	-0.93378292564401	0.00511316459228422	0.0482874600662579
Merged-chr18-67435608-4	chr18	67435514	67435714	+	854.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027130, intron 5 of 16)	intron (NM_027130, intron 5 of 16)	13522.0	NM_027130	69597.0	Mm.426052	NM_027130	ENSMUSG00000024527	Afg3l2	2310036I02Rik|AW260507|Emv66|par	AFG3-like AAA ATPase 2	protein-coding	4.81856199075452	4.32275871359438	5.00896053878953	4.95876895337033	4.34201048964595	4.3509817650716	4.49134239515439	4.74598254755397	-0.691222125281581	0.0777735985240331	0.301615286550188
Merged-chr3-109478769-3	chr3	109478652	109478852	+	922.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-95255.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.23775411843572	4.02113269456517	4.1540795452297	3.96304331751407	4.3398628020724	3.92604832841191	3.94997884443758	3.74510221592395	-0.176460033927121	0.695768825023801	0.876851576599482
Merged-chr12-75833640-4	chr12	75833525	75833725	+	961.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005510, intron 1 of 115)	intron (NM_001005510, intron 1 of 115)	15307.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	4.58072915886917	5.00854440657644	4.82302693146909	5.12037182934518	4.72635734297108	4.84236144528052	4.76328736271705	4.78263944134093	-0.289346555353246	0.401058521329266	0.698827271577009
Merged-chr2-76049831-3	chr2	76049749	76049949	+	817.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081033, intron 14 of 19)	intron (NM_001081033, intron 14 of 19)	-67882.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	3.05643491754631	3.00068418682404	3.27189505719314	2.88114757202704	2.93747592604725	2.9759133053293	2.92426564415131	2.99538240584778	-0.397439329799367	0.504626587151745	0.770888948942188
Merged-chr16-16042267-4	chr16	16042147	16042347	+	944.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 6 of 18)	Lx2|LINE|L1	104604.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	5.11484662865358	5.28464166281581	5.17886698917278	4.28916893109845	5.29382639964119	5.35219360983686	5.12205437576009	4.86321312745555	0.30321421408251	0.435438861096065	0.724618396978394
Merged-chr2-4487634-3	chr2	4487532	4487732	+	865.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 4 of 23)	intron (NM_001177843, intron 4 of 23)	-72122.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	3.42352982234284	3.19701052931522	3.42401322412928	3.00726957683095	3.5756651268887	3.4259318383244	3.2400350793493	3.422058188915	0.585236981525984	0.284305122884986	0.596222858869618
Merged-chr19-56822290-4	chr19	56822160	56822360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3949.0	NM_001002238	83561.0	Mm.247541	NM_031387	ENSMUSG00000025081	Tdrd1	MTR-1	tudor domain containing 1	protein-coding	7.77879342395201	7.96107635109762	7.52355405829022	7.59366021585683	7.76909944553554	8.14907645324495	7.84621852311993	7.5371367096028	0.154449613667447	0.444614901680168	0.731001411006229
Merged-chr11-99165108-4	chr11	99164993	99165193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10016.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	7.10944038877481	7.47360059871889	6.82690605714883	5.7952059183251	7.53255733176267	7.62033212480655	7.07463123914626	6.60159675249829	0.438845436654638	0.415182498177826	0.709524545209949
Merged-chr5-96206902-4	chr5	96206805	96207005	+	819.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3210.0	NM_001039084	94061.0	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	4.21712871368703	3.79353101086623	4.08851263419815	4.21851604438251	4.00576112480575	4.01492565248212	3.52040740893281	4.21506921885286	-0.346237132991504	0.466530196720427	0.746420287776482
Merged-chr5-136171687-4	chr5	136171592	136171792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1036.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	7.37952259110046	7.99831725616928	7.5505742156844	6.85794860123829	7.77828362392455	7.63658103885284	7.44088076254872	6.91796408835563	-0.0294929239805338	0.916510311516285	0.969045329388458
Merged-chr8-46432470-3	chr8	46432374	46432574	+	882.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38563.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	3.86430291368839	4.35952032218107	4.09207556884009	3.26132743653326	4.74114649517868	4.74178703313607	4.47328216149453	4.45324159419489	1.57873554475884	0.00145506487576713	0.0182053195275494
Merged-chr19-4332901-4	chr19	4332798	4332998	+	988.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001984, intron 12 of 20)	intron (NM_001001984, intron 12 of 20)	-26676.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	5.68154826988984	5.70203732354173	5.17627315233945	4.96616800631413	5.59509334125313	5.54348315594229	5.48101021905508	5.02699405583668	0.0417887249534842	0.902775777900114	0.963904254033634
Merged-chr2-27728144-4	chr2	27728035	27728235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	17552.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.97746350230874	6.3266293964287	6.36204957075005	6.02253196340481	6.70761111279682	6.3510201598011	6.34659523944826	5.85078376992097	0.275146182711865	0.311735698934934	0.623665218229603
Merged-chr7-141437653-4	chr7	141437552	141437752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360523)	TTS (NM_001360523)	222.0	NM_026646	68267.0	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	6.1179037819688	6.25784352534425	6.07676495249294	5.97095291810151	6.41651383468971	6.0697559187136	6.26138079565535	6.44145348059208	0.322373764068756	0.168649989732183	0.460920383592684
Merged-chr8-124007713-4	chr8	124007626	124007826	+	863.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357315, intron 3 of 4)	RMER16|LTR|ERVK	13330.0	NM_001357315	102162.0	Mm.291777	NM_133966	ENSMUSG00000038697	Taf5l	1110005N04Rik|AI849020	TATA-box binding protein associated factor 5 like	protein-coding	4.35324495568855	4.09412138776856	4.26432290753546	4.59727682539148	4.40618546973568	4.48205276433015	4.3765428989877	4.30724891018285	0.082931698531055	0.83420004446331	0.936725810109611
Merged-chr8-120738931-4	chr8	120738810	120739010	+	906.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001301811, exon 1 of 9)	5' UTR (NM_001301811, exon 1 of 9)	271.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	4.00119662865568	4.06454544589933	5.21954985039331	4.57783961801521	4.91787678672508	4.25134189116565	5.01016520207436	4.46983757585545	0.270962379574715	0.719664792678159	0.888022825078143
Merged-chr1-43914730-4	chr1	43914623	43914823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19271.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	7.15811720933192	7.04050647678225	7.64030213703182	7.32377240339675	6.90074543815794	6.54996875591978	6.75371418568402	6.78345126626647	-0.759193048279862	0.000543339106993046	0.00825492727783522
Merged-chr2-66210091-4	chr2	66209996	66210196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290669, exon 20 of 28)	exon (NM_001290669, exon 20 of 28)	46521.0	NM_001047604	73668.0	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	5.07592765397988	5.02705971449179	5.17633634543539	5.65779418638438	5.04899174729884	5.18204617675228	5.05223292038264	5.26499538924522	-0.275898687294287	0.40694569378153	0.703399405965895
Merged-chr2-21186790-7	chr2	21186682	21186882	+	935.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027728, intron 4 of 4)	intron (NM_027728, intron 4 of 4)	18583.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	4.01115530308126	4.05421216736595	4.66907040118676	4.28562004004717	4.5483766725532	4.65559392233669	4.34047179776359	4.40034241250176	0.494957675934105	0.225939620404587	0.534543381939136
Merged-chr7-12422510-4	chr7	12422418	12422618	+	838.830383	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033820)	promoter-TSS (NM_001033820)	-27.0	NM_001033820	619331.0	Mm.361832	NM_001033820	ENSMUSG00000034071	Zfp551	9630004E07Rik|Znf551	zinc fingr protein 551	protein-coding	4.11957825568012	3.72556129132612	4.41208580067062	4.43925780180064	4.05133496669887	3.98382539121833	4.0551053230194	4.25094002700063	-0.317788927838019	0.483693803654927	0.757960532117078
Merged-chr7-19491943-2	chr7	19491843	19492043	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	16388.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	3.49011435465704	3.70331552528093	3.82991505574028	3.39031402079574	3.47586125445644	3.35995125261129	3.4209788000124	3.37274809793233	-0.655360686879843	0.207967063819568	0.512108434400184
Merged-chr17-56023437-5	chr17	56023295	56023495	+	912.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	13242.0	NM_013664	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	4.07201292318936	4.03655314255756	4.33642418102899	3.85024191230945	4.19268389278615	4.38168328341035	4.10259268931941	4.07018323483245	0.311176779113785	0.460196091932147	0.742490742225721
Merged-chr5-124111216-3	chr5	124111123	124111323	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1098.0	NM_001361482	66627.0	Mm.7050	NM_025671	ENSMUSG00000023707	Ogfod2	1300006G11Rik|5730405M13Rik|AU041636|AW552395	2-oxoglutarate and iron-dependent oxygenase domain containing 2	protein-coding	4.07709066471427	3.97440996306131	3.58325416899314	3.63793212408004	3.99263161276847	3.70068072301372	3.68407491328738	3.7503977731313	-0.0931177273740176	0.847097575069921	0.942206430226301
Merged-chr3-144719256-4	chr3	144719133	144719333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 1 of 10)	intron (NM_001282037, intron 1 of 10)	1102.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	7.92941869484646	7.99247763657741	8.35049416385208	8.14932786100253	8.05068012764825	8.20028154660835	8.37264743668265	8.18297303937669	0.112174784282067	0.521328560712199	0.781328735243796
Merged-chr10-128035497-4	chr10	128035384	128035584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001113199, exon 1 of 9)	5' UTR (NM_001113199, exon 1 of 9)	138.0	NM_001113199	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	8.13364796032456	8.22684597512051	8.183443868721	8.0796911503309	8.0022120728933	8.03713580370616	8.2139022301317	7.96488423757729	-0.124962785423162	0.429790804552097	0.720626426084
Merged-chr19-59345199-4	chr19	59345026	59345226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033222, exon 1 of 5)	exon (NM_001033222, exon 1 of 5)	654.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	3.96012075463922	3.97718354447545	4.19101263122292	4.13626860463554	3.80606720330288	3.92023726380074	4.12958249907701	4.14557239196046	-0.191104743292954	0.655264004379114	0.855987310374778
Merged-chr15-97941519-4	chr15	97941425	97941625	+	813.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-22704.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	3.8277537818124	3.62963242759039	3.51989052428563	3.4297105920676	3.90295209228292	3.80220160789248	3.5627458071746	3.33185307611982	0.22447319809153	0.662234751405058	0.859932634685043
Merged-chr11-31713340-4	chr11	31713235	31713435	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41473.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	5.42252180304932	5.14588352214385	5.39486005343487	5.92734958051198	5.33608185233309	5.28214233196955	5.47779991164473	5.13605892776444	-0.376118955034054	0.24819320780708	0.559285286304497
Merged-chr4-134702157-4	chr4	134702057	134702257	+	807.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 1 of 11)	intron (NM_207237, intron 1 of 11)	2133.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	3.53841550550784	3.63351246686732	3.59279000268638	3.53953445372748	3.6039002231355	3.47565598572406	3.77130798894301	3.42219533907122	0.00993831754081355	0.983667250245795	0.994100000074476
Merged-chr1-162740121-4	chr1	162740039	162740239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081290, intron 1 of 34)	CpG	417.0	NM_001081290	226562.0	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	5.99452490172829	6.00735432785023	6.68519974056783	6.34132612837116	6.09425150102896	6.36796681850195	6.50777458156744	6.3207263909116	0.0539675098628722	0.836955367509982	0.938132001645803
Merged-chr8-122938733-3	chr8	122938636	122938836	+	905.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	90362.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	4.66881842294198	3.67255718527897	3.92100593289491	4.39177692278098	3.68445326878066	3.93269906005533	4.05464938443913	4.11687744705553	-0.69513588811108	0.169355607315842	0.461860642648824
Merged-chr16-30023573-4	chr16	30023478	30023678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045878, intron 3 of 3)	intron (NR_045878, intron 3 of 3)	14911.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	5.34585554717474	5.64523915823406	5.97233452234671	6.13019235895597	6.51244568119165	6.14906413301062	6.52272676341922	6.0550572820828	0.780243688944021	0.00770926987309573	0.0654272231187649
Merged-chr4-150239050-4	chr4	150238944	150239144	+	833.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023119, intron 1 of 11)	intron (NM_023119, intron 1 of 11)	1720.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	3.73827168605147	3.55571652351863	3.98754528166653	4.10843571997472	3.96129474249298	3.61512218413387	3.82828850970215	4.07221570320718	0.0190531340258163	0.968745695874268	0.988762939668968
Merged-chr9-90380259-3	chr9	90380151	90380351	+	845.694458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-109482.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	3.73083235760734	3.75409395571318	3.90248975758232	3.86067266707715	4.19868153094991	4.07973345329683	4.68432677590364	4.0030986154859	1.18094876968138	0.00816960013104338	0.0681237075594584
Merged-chr7-55870488-4	chr7	55870355	55870555	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	B2_Mm2|SINE|B2	28384.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	4.32588635507322	4.69259163574669	4.63584216679035	4.33819929804655	4.85390496696718	4.687136533098	4.79512272234229	4.70898772735943	0.582635772072567	0.0996601814514333	0.34625431032028
Merged-chr7-145264404-3	chr7	145264336	145264536	+	945.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132643, intron 13 of 22)	LTR41B|LTR|ERVL	19575.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	3.98702532282603	4.09097281090568	4.07848366069171	4.42626043067396	3.64897464887834	3.52146962104124	3.82245914184951	3.83578680924121	-1.31153361216773	0.00535064110712068	0.0499859924288421
Merged-chr4-101172880-4	chr4	101172761	101172961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 10 of 24)	intron (NM_146145, intron 10 of 24)	92421.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	6.77016764213345	6.79179728401511	6.81428238473424	7.21701174910028	6.91852096120898	6.60029541337632	7.04381820149284	6.73711053999494	-0.12317143726288	0.584183924587574	0.817552638829506
Merged-chr6-128201545-3	chr6	128201441	128201641	+	970.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17738.0	NR_077223	330427.0	Mm.426356	NR_077223	ENSMUSG00000107879	9330102E08Rik	-	RIKEN cDNA 9330102E08 gene	ncRNA	4.64832551537212	4.93691507002729	4.44808069082694	4.72733740249798	4.12632253505332	4.3386072243532	4.24319970017092	4.68258885097972	-0.790564077604273	0.0449977744482575	0.216822135625001
Merged-chr8-94745552-4	chr8	94745456	94745656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009137)	promoter-TSS (NM_009137)	-128.0	NM_009137	20299.0	Mm.12895	NM_009137	ENSMUSG00000031779	Ccl22	ABCD-1|DCBCK|MDC|Scya22	chemokine (C-C motif) ligand 22	protein-coding	5.23757542355377	6.04560121301704	5.34648836799028	4.95408480281431	6.31840002826227	6.64681535933586	6.3509061436643	5.50518724445223	1.28120670239956	0.000482285557847342	0.00750516041145954
Merged-chr2-164910702-4	chr2	164910589	164910789	+	828.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_199027, exon 2 of 28)	exon (NM_199027, exon 2 of 28)	1061.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	3.44818479516047	3.57484453552039	3.44860898500189	3.50495437065186	3.77858625692596	3.56383975372322	3.60396679154009	3.94168084909835	0.738598783063935	0.123178451274358	0.389140250466359
Merged-chr2-158177184-4	chr2	158177083	158177283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-14825.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	6.46529894870292	6.29466212339134	6.82594767156961	6.7764938917608	6.10645919449989	6.09087439457693	6.44977063953002	6.16242974574598	-0.603588222756974	0.0134533334152517	0.0973210183871172
Merged-chr10-39387221-3	chr10	39387120	39387320	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 1 of 13)	intron (NM_001122893, intron 1 of 13)	17421.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	3.18690360277246	3.29282816508325	3.18733517495029	3.55305528586821	3.00736050802703	2.90895866595748	2.86727691038422	2.80193349712892	-1.79795627617622	0.00493080220590512	0.0470847290332869
Merged-chr11-44415443-1	chr11	44415343	44415543	+	1000.0	f0_c57.idr	TTS (NM_001303244)	TTS (NM_001303244)	15380.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	5.18027115583343	5.44976855821708	5.57313895815155	5.20855674211658	5.58177451661143	5.32492030252369	5.84156397013782	5.69254253330994	0.47030049798067	0.104891201491429	0.356238707460561
Merged-chr3-89835657-4	chr3	89835566	89835766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172530, intron 2 of 5)	intron (NM_172530, intron 2 of 5)	4296.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	5.55767361583493	5.64149344614221	5.69147152703902	5.83740952211273	5.65174703789376	5.55677004240816	5.87002358080662	5.76086380722919	0.0244956802708559	0.925653251167145	0.972574816051611
Merged-chr10-87858841-6	chr10	87858770	87858970	+	782.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010512)	promoter-TSS (NM_010512)	-182.0	NM_001111275	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	3.35947071646052	3.61532262076737	3.53168462393141	3.43118470505086	3.23458569081114	3.75333293195732	3.28612281317212	3.68100977464387	0.0536703090113511	0.919494788259985	0.970308092934814
Merged-chr9-87171696-4	chr9	87171551	87171751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101482, intron 2 of 3)	B3|SINE|B2	22423.0	NM_001359955	244958.0	Mm.335337	NM_001101482	ENSMUSG00000042761	Mrap2	BB633055	melanocortin 2 receptor accessory protein 2	protein-coding	6.56040064323762	6.27953203146706	6.71246700892431	7.35395221675089	6.20553248920981	6.03314709473723	6.59014374908187	6.54073030325285	-0.64314087249108	0.0307422879434084	0.170050148704062
Merged-chr3-69598992-4	chr3	69598906	69599106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020026)	promoter-TSS (NM_020026)	-46.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	5.66676727158571	5.72671214600516	5.56428904902322	5.26853722022669	5.5074769633663	5.47343813036314	5.71090587606946	5.73604721635967	0.0989645324717534	0.72674372142074	0.891264337092642
Merged-chr8-57512900-3	chr8	57512799	57512999	+	950.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008252, intron 2 of 4)	intron (NM_008252, intron 2 of 4)	1056.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	4.06723405519493	3.64134910011893	4.06788238479179	4.18785867427578	3.4607659272683	3.9033776067455	3.81879587538922	3.61058671220089	-0.904438426636741	0.0653109158819238	0.272048553462047
Merged-chr9-66601200-4	chr9	66601097	66601297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8082.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	5.24188748415784	5.58964259662811	4.40636306425928	4.68225261394762	5.18663890583028	5.15959443252471	5.24520005264123	5.04972910201223	0.190410439028939	0.633180362160691	0.844497545312468
Merged-chr4-105158316-4	chr4	105158226	105158426	+	789.462524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 1 of 5)	CpG	979.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.94138912177225	4.0464581548628	4.08988128654397	4.26086171880968	3.97394761519239	4.06379315421082	4.24416882167567	4.04003837004545	-0.059161595674701	0.887864334145836	0.957940939153371
Merged-chr11-62646363-4	chr11	62646261	62646461	+	971.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198861, intron 1 of 3)	intron (NM_198861, intron 1 of 3)	1688.0	NM_001357955	192976.0	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	5.66560653842086	5.81170676799911	5.82961409244527	5.35252725537649	5.70072697095825	5.59685420369166	5.5614562497418	5.11193817520938	-0.250039583887648	0.408334256067014	0.704294465750557
Merged-chr14-75131657-4	chr14	75131546	75131746	+	928.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027581)	promoter-TSS (NM_027581)	523.0	NM_001247984	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	4.66283685013631	5.90272725167516	5.21893083530045	4.09323658138176	5.43030840715393	5.6865062467016	4.68624136345207	4.41014096889252	-0.0205412102798647	0.98051022829042	0.99281244474172
Merged-chr3-90077612-4	chr3	90077505	90077705	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022314, intron 2 of 8)	intron (NM_022314, intron 2 of 8)	-1916.0	NM_001253738	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	5.52361951559509	5.28996013977711	4.99902946751072	4.89971614722132	5.17063677773237	5.37298926545153	4.97542431603953	5.13315183130896	-0.0355719494014028	0.914343837387987	0.967950384482346
Merged-chr1-37029969-4	chr1	37029867	37030067	+	905.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90440.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	4.15965571397827	4.15900200600729	4.29669844221913	4.384070067273	4.39373713616731	4.23550246574775	4.39927059992382	4.10921275245785	0.0780971269274939	0.84293644050993	0.940323698985438
Merged-chr1-55838310-4	chr1	55838194	55838394	+	958.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92947.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	4.86020271865162	5.02406597970658	4.86101089430425	4.84269575007125	4.6771651794375	4.48724042455278	4.65253415331899	4.7490676394039	-0.521684417934276	0.121289972012094	0.385671952458887
Merged-chr5-135008995-4	chr5	135008902	135009102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190437)	promoter-TSS (NM_001190437)	-150.0	NM_001190437	68758.0	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	8.83526892023962	8.96447068896934	8.76853803397598	8.54031485841328	8.78342848621226	9.00693154365123	8.61263723106118	8.65557831572217	-0.0111688625042383	0.948179142592297	0.981388084353081
Merged-chr1-184730895-4	chr1	184730794	184730994	+	751.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008250, intron 1 of 3)	intron (NM_008250, intron 1 of 3)	1599.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	3.87213214906862	3.89353976758951	4.11116835233206	3.30843922297863	4.06168027339371	4.47944425056312	3.56898534403094	3.92161703528256	0.595314483917677	0.26517701772348	0.576956662317123
Merged-chr14-70959009-4	chr14	70958910	70959110	+	916.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 3 of 7)	L1_Rod|LINE|L1	68903.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	4.00315187204998	3.89540456788772	4.05302156205585	4.46513850631959	4.17369484573954	3.90578856535607	4.29430664188432	4.0014132577768	-0.095158256236332	0.833210930393703	0.936237948428556
Merged-chr7-6191539-2	chr7	6191439	6191639	+	899.416626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001146024, exon 5 of 5)	3' UTR (NM_001146024, exon 5 of 5)	-5551.0	NM_178028	232836.0	Mm.246599	NM_178028	ENSMUSG00000034660	Galp	-	galanin-like peptide	protein-coding	3.02622924350592	3.33524322940957	3.3793995092008	3.06452082699517	3.08381792310146	3.26669956368407	3.20284036795226	3.32498490469821	0.0537494839342771	0.923391966316811	0.971661765008416
Merged-chr7-19692104-4	chr7	19691995	19692195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110009, intron 2 of 3)	intron (NM_001110009, intron 2 of 3)	564.0	NM_001110009	11812.0	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	6.56482803152606	5.7862286856999	6.61041881509258	6.35454972073715	6.17044503307188	6.11197134232735	6.48649652821282	6.45108838777282	-0.0733606820052542	0.786405614641336	0.916926763301385
Merged-chr17-67449599-4	chr17	67449465	67449665	+	744.325012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-95074.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	3.98677978250697	3.94045574561815	3.67905750020662	3.46587148012649	4.11356553118515	3.91115325135915	3.7210814372044	4.02973270542541	0.521948305167551	0.272393639071025	0.583838924250549
Merged-chr3-104790540-4	chr3	104790447	104790647	+	930.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291859, intron 1 of 4)	intron (NM_001291859, intron 1 of 4)	1513.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	4.31529970587798	4.85074598467912	4.36181857307555	4.30946791027996	4.62538300925367	4.39699015974106	4.043358843774	4.67625063611933	-0.0338056297671041	0.935851773311617	0.976701465830146
Merged-chr1-106320805-4	chr1	106320704	106320904	+	931.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 4 of 16)	intron (NM_133821, intron 4 of 16)	148935.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	4.72129759717655	4.74513668753398	4.86940320813976	4.74179908821432	4.76050025448944	4.77522724328367	5.06641809479311	4.59632855615903	0.0875976578969346	0.795341111679794	0.920828006120075
Merged-chr9-89268996-4	chr9	89268893	89269093	+	956.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57609.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	5.48283874232866	5.37581163935957	5.43357411921211	5.48249707398158	4.87664968893075	4.6796236647435	4.98677174085986	4.68489503162792	-1.19830648989139	0.000122949667849267	0.00240953590524312
Merged-chr11-23770320-4	chr11	23770235	23770435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	635.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	5.92409163689035	6.46978752756476	6.10985991919274	6.34103237293665	6.43193089401476	6.30795032728425	6.27611468692978	6.49109567633244	0.211351857718757	0.376362618137423	0.679172347306585
Merged-chr10-81168997-4	chr10	81168885	81169085	+	912.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1265.0	NM_021501	59004.0	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	4.7097153792943	4.69106758544563	4.59462076877833	4.78668606251562	4.89810548365651	4.50479602138881	4.72417624172011	4.1088226112381	-0.208151026051384	0.594445769739624	0.823413789941784
Merged-chr19-21653727-2	chr19	21653627	21653827	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025423)	promoter-TSS (NM_025423)	418.0	NM_146096	226016.0	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	5.07721000195271	5.08844121945433	5.1707247668986	4.7456437246222	5.11961324077992	5.00697342779076	4.91918652304249	4.78858145720443	-0.0833747573830407	0.801243786132679	0.923340719847852
Merged-chr17-46858410-4	chr17	46858290	46858490	+	817.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26977.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	3.59949654491334	3.78770368055802	3.54079090967415	3.47470908219413	3.88793643270215	3.88302942818973	3.93462352245438	3.81086571447055	0.843760977898917	0.0634329970523418	0.267317875816274
Merged-chr9-21963623-4	chr9	21963577	21963777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010149)	promoter-TSS (NM_010149)	-101.0	NM_010149	13857.0	Mm.2653	NM_010149	ENSMUSG00000006235	Epor	-	erythropoietin receptor	protein-coding	5.742678566564	5.36299523322002	5.57745844854235	5.75927917272421	5.35371638435125	5.30300604282423	5.32923338095866	5.04633613809881	-0.631390903810379	0.0299043954694791	0.166880828312195
Merged-chr8-92846771-4	chr8	92846677	92846877	+	954.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008610, intron 11 of 12)	intron (NM_008610, intron 11 of 12)	-8556.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	4.68240260686908	4.62719331644729	4.91054968606853	5.03199776933066	4.90248183877851	5.08221997980439	4.85204874720234	4.79872979591748	0.144543303267518	0.669878261152257	0.863712793235332
Merged-chr13-78201715-3	chr13	78201604	78201804	+	778.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045195, intron 1 of 2)	intron (NR_045195, intron 1 of 2)	-2831.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	3.52471156622198	3.35191688389434	3.73822157428845	3.7755135926013	3.43514552592337	3.64159796816451	3.85981436134431	3.73599172089399	0.173396073617128	0.731624778435604	0.893711507171347
Merged-chr12-111429197-3	chr12	111429114	111429314	+	898.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 12 of 13)	intron (NM_001289487, intron 12 of 13)	11769.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	3.61101055633494	3.52750709661779	3.66707797475	3.14829639720645	3.82815524463109	4.08314696805995	3.59708536723008	3.95567589371022	1.18899555094793	0.0189266998837896	0.123266865315057
Merged-chr8-88656182-4	chr8	88656102	88656302	+	970.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 2 of 12)	intron (NM_145857, intron 2 of 12)	8855.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	4.73679965105092	4.91055483083458	5.05732193879891	4.65528368260226	4.77154787576417	5.228112420856	4.96847056187574	4.77416333515634	0.209087430178705	0.541683480645585	0.793401254763463
Merged-chr11-31796379-1	chr11	31796279	31796479	+	601.5	f0_balb.idr	Intergenic	Intergenic	28168.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	3.39154028594682	3.06187043066394	3.39203925466818	3.165483153601	2.9828536881711	3.27877541569459	3.09270387635215	3.44065760648068	-0.183706732237825	0.748878819418587	0.901109312321074
Merged-chr15-93398384-4	chr15	93398253	93398453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175363)	promoter-TSS (NM_175363)	3.0	NM_175363	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	6.58908093746118	7.03381084118087	6.49930725710713	6.71866043823418	7.41996135419651	7.32606688604207	7.60760704570193	7.29269649407767	0.940489922127534	7.11260875393057e-06	0.000203402321613509
Merged-chr19-55316505-4	chr19	55316403	55316603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033573)	promoter-TSS (NM_001033573)	446.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	6.43801389106791	6.91082415532939	7.26698604108451	6.58359228543396	6.04402617043873	6.56210687242143	6.62022181148656	6.60306855193888	-0.524096163313535	0.0534719204393755	0.241354767060458
Merged-chr12-25099568-4	chr12	25099464	25099664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3472.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	6.79673825542303	6.8692264642973	6.93959297901472	7.07411068843069	7.32099826151053	7.13019402929536	7.37676145051606	7.30328058803413	0.482886803257034	0.0112751018417241	0.0859353757353123
Merged-chr1-135729263-5	chr1	135729228	135729428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007791, intron 1 of 5)	CpG	161.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	5.72717751567558	5.90988181635264	6.30129427238767	6.14839605737726	6.77041330452567	6.66451241980449	6.54764931910088	6.11873681541127	0.759837912858598	0.00376246467972454	0.0381602270501728
Merged-chr16-64852695-4	chr16	64852586	64852786	+	922.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347245)	promoter-TSS (NM_001347245)	685.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	4.62355237054253	4.53274606890696	4.97464899829961	4.71501232513487	4.74500526348162	4.48626985065739	4.82252896671126	4.53803811209106	-0.123193618753534	0.730268814710728	0.893000516342052
Merged-chr5-99541763-4	chr5	99541665	99541865	+	936.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	187295.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	4.16138939335157	4.55237742123834	4.46776178941713	3.74513632305266	4.44115935335659	4.51829388249378	4.48428411889977	3.82646771201781	0.194654292108185	0.683140272908239	0.870271715831715
Merged-chr4-155601605-7	chr4	155601509	155601709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177186, exon 1 of 9)	5' UTR (NM_177186, exon 1 of 9)	193.0	NM_177186	320541.0	Mm.306018	NM_177186	ENSMUSG00000042202	Slc35e2	A530082C11Rik|AI957035	solute carrier family 35, member E2	protein-coding	6.34826883413248	6.76250720910715	6.56832595322471	6.49450617105648	6.83207748811197	7.29188152776293	6.79045921098211	6.99829147189857	0.616010559223611	0.00566714388457415	0.0521434377663009
Merged-chr19-55701009-4	chr19	55700927	55701127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 1 of 3)	intron (NR_045318, intron 1 of 3)	1177.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	6.35008212600771	6.34268894200396	6.60239500086755	6.23515790421251	5.92178208352408	6.02329797805117	6.0494157430789	6.17955588618826	-0.516773449415267	0.0280660543976459	0.160317284806198
Merged-chr8-70627205-2	chr8	70627072	70627272	+	796.666626	f0_balb.idr|f1_balb.idr	Intergenic	MERVK26-int|LTR|ERVK	4923.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	3.73814125282738	3.61839964526078	3.78239474742486	3.51792076796095	3.1615970446012	3.23567354007242	3.04199412047104	3.37970290858969	-1.66150265864273	0.00309082738111009	0.0327237843462792
Merged-chr14-58308957-4	chr14	58308827	58309027	+	903.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	236241.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	4.45478274089536	4.22484877687766	4.80293672707236	3.79930309668913	4.70967415035776	4.71691473455065	4.51978395711865	5.04401922689318	0.883325571092279	0.0425802662959585	0.209585836019641
Merged-chr2-4548595-3	chr2	4548501	4548701	+	933.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 11 of 23)	intron (NM_001177843, intron 11 of 23)	-11153.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	4.03918997216929	4.19877279402702	4.18191363308496	4.43755346389602	4.11500080203501	3.88203341767243	4.24925206785538	4.13377072185705	-0.340392221180206	0.418516447845711	0.711949966908158
Merged-chr12-88361335-4	chr12	88361233	88361433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361598, intron 1 of 9)	MER5A|DNA|hAT-Charlie	551.0	NM_001361598	72113.0	Mm.181387	NM_028105	ENSMUSG00000021044	Adck1	2610005A10Rik	aarF domain containing kinase 1	protein-coding	5.69374835749263	5.50082807728015	5.86280359566644	6.02409529316286	5.66481304601521	5.763810847419	5.5603668669037	6.04467047988318	-0.0503539044522307	0.85811836118182	0.946507493877689
Merged-chr1-128591469-2	chr1	128591375	128591575	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356509, intron 1 of 1)	CpG	824.0	NM_009911	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	4.22719644741786	4.34284534681288	4.51050481888219	4.23556649594862	4.15548631566412	3.98822810019456	3.85096093295617	4.50746490292258	-0.441733843273521	0.303562479000439	0.616171939285553
Merged-chr2-157426927-2	chr2	157426847	157427047	+	839.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 1 of 13)	GA-rich|Low_complexity|Low_complexity	2654.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	3.50740169176375	3.46002073896069	3.55820391199733	3.13667639942235	3.39331065452638	3.33435230739063	3.27263320648172	3.39907590682221	-0.216495713279092	0.686393494778359	0.871787672169905
Merged-chr5-136083883-4	chr5	136083760	136083960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133914)	promoter-TSS (NM_133914)	-56.0	NM_133914	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	8.0713692790801	8.00935951356611	7.893906042598	7.95395230811724	8.09688546944476	8.15003102531072	8.10868514417873	7.91777638749954	0.114811573715096	0.469773453604634	0.748623217976184
Merged-chr10-98815037-4	chr10	98814912	98815112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99630.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	6.19158145054344	6.03699202112713	5.93674245841857	5.77851152106793	6.21894926011996	6.42392200232854	6.08168766250971	6.36763355776252	0.458111401361475	0.0590243123425862	0.25589545183536
Merged-chr11-61147402-3	chr11	61147284	61147484	+	723.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021349, intron 3 of 3)	CpG	6549.0	NM_021349	57916.0	Mm.265915	NM_021349	ENSMUSG00000010142	Tnfrsf13b	1200009E08Rik|Taci	tumor necrosis factor receptor superfamily, member 13b	protein-coding	3.37072587840145	3.54384219493534	3.48763134865964	3.43475616183016	3.24560338280659	3.65907177426468	3.67690989943826	3.59243929560404	0.288476863046463	0.570693585496065	0.81018968611422
Merged-chr10-20653481-4	chr10	20653366	20653566	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	B4A|SINE|B4	71612.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	5.94682123034042	5.8870959240511	5.78870580527351	6.20183115695612	5.84176619815854	5.69796276199378	5.73500800111909	5.3905637966658	-0.481134791429026	0.075645946196168	0.297136074405223
Merged-chr8-11009554-4	chr8	11009472	11009672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	CpG-13826	-1142.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	6.13214853263228	5.98917774133777	6.17359048668201	6.43203403401679	6.17506208363456	5.87774417804027	6.35902718305244	6.33614946212412	-0.0062135630133877	0.980283429389074	0.99281244474172
Merged-chr10-94013346-2	chr10	94013246	94013446	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304720, intron 1 of 11)	B3|SINE|B2	22396.0	NM_001304720	215008.0	Mm.124177	NM_172538	ENSMUSG00000036099	Vezt	A630071D13Rik|AI848282	vezatin, adherens junctions transmembrane protein	protein-coding	3.36225748934845	2.92917671583199	2.88652643554468	2.87905839390638	3.37214026925471	3.19741978157904	3.13432749726748	3.20213276612055	0.826005928210618	0.159572918776475	0.447227656242498
Merged-chr1-51918012-3	chr1	51917919	51918119	+	822.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2041.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	3.59860440075592	3.67910873952361	3.74802201153213	3.50098100098246	3.46668597495019	3.48210673659477	3.68481683400984	3.487158953426	-0.312453320000008	0.522240796460174	0.781906056970297
Merged-chr4-141638324-3	chr4	141638208	141638408	+	834.477783	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033150, intron 6 of 19)	intron (NM_001033150, intron 6 of 19)	-14474.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	3.31550523876769	3.48095935056536	3.60436054963159	3.59533873302914	4.48711854494287	4.43634092876868	4.2044003059056	4.41270722716117	2.38813116499532	8.36365142682e-07	2.97807075992807e-05
Merged-chr2-173352390-4	chr2	173352237	173352437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75804.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	5.4670536153367	4.87934981666812	5.30113340797215	5.82838299931292	5.30747457478928	4.9803827980884	5.11787581092619	5.13947681538592	-0.514868230149788	0.140597027113439	0.417020460987187
Merged-chr6-140594072-4	chr6	140593976	140594176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144920, exon 31 of 31)	3' UTR (NM_144920, exon 31 of 31)	-28587.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	5.24276887026484	4.97588670308746	5.27435712065452	5.30745669137713	5.20870024580228	5.32190897632529	5.41689890030839	5.32988517235348	0.1896109834098	0.517934423516459	0.779145623710331
Merged-chr8-11756047-4	chr8	11755959	11756159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113517, intron 1 of 18)	Tigger17|DNA|TcMar-Tigger	-2271.0	NM_017402	54126.0	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	6.1204081577378	6.45336489195658	6.14218277278434	6.24577158029783	6.4565175355052	6.45333196567684	5.70571261370441	6.09609380302623	-0.0452665873687893	0.865866363786753	0.949727926552738
Merged-chr16-44109305-4	chr16	44109204	44109404	+	971.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358203, intron 6 of 14)	intron (NM_001358203, intron 6 of 14)	29955.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	5.06867160564061	5.18195744644962	4.77446339611466	5.6433169448479	4.89526642606879	4.68435147051422	4.9427498859993	5.09854658834612	-0.60395687947892	0.0974047169743538	0.341999446507374
Merged-chr11-116853229-4	chr11	116853150	116853350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011358)	promoter-TSS (NM_011358)	-156.0	NM_011358	20382.0	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	7.20685693637561	7.37278795501005	7.04753013811242	6.79014194257231	7.86563689640673	7.98282881227885	7.5738575693036	7.73382196829395	0.914899530338613	9.69952818719348e-06	0.000267701712615838
Merged-chr18-68062217-4	chr18	68062161	68062361	+	955.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	129088.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	6.10091693223017	5.78866681804264	6.2179618473068	6.11017501814556	5.1545853260835	4.89145831927663	4.67595266202351	4.79245665425348	-2.04546185025689	1.60967381643568e-10	1.19100803097792e-08
Merged-chr3-127355434-4	chr3	127355336	127355536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327939, intron 1 of 45)	intron (NM_001327939, intron 1 of 45)	53622.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	6.50879796807063	6.39138147672863	6.66034845593279	6.95549642052617	8.10144926494106	8.04356975036447	8.43734273094345	8.00834977984471	1.98226086858714	2.77155879668547e-19	8.61470670695525e-17
Merged-chr2-102896608-1	chr2	102896508	102896708	+	562.0	f0_c57.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	5057.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.28017173930912	2.81692216183135	2.96040407189057	3.0081358088291	3.47150731509235	3.33684762257507	3.60992425242244	3.27879344381753	1.51853135214047	0.00803911593011411	0.067430618994767
Merged-chr18-53915194-3	chr18	53915115	53915315	+	774.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 4 of 12)	intron (NM_152809, intron 4 of 12)	53102.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	3.14225841341422	3.00090960701277	2.82530114645874	3.07446512402285	2.34303367333288	2.42547124444937	2.40024242954881	2.48376349190339	-4.49709634185213	2.62732183141084e-05	0.000647848106545717
Merged-chr1-179073157-4	chr1	179073063	179073263	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 8 of 11)	L3b|LINE|CR1	444878.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	4.43814605981853	4.46927640916588	4.56309141422622	4.55928024898122	4.48255815796108	4.03767006980567	4.99485661146351	4.47874276971424	0.0782200960186316	0.848814074740665	0.942888080090802
Merged-chr11-102881079-4	chr11	102880979	102881179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011431)	promoter-TSS (NM_011431)	-104.0	NM_001109995	20624.0	Mm.873	NM_011431	ENSMUSG00000020929	Eftud2	116kDa|Snrp116|U5-116kD	elongation factor Tu GTP binding domain containing 2	protein-coding	5.21170153557321	6.01121907003948	5.21258423661388	5.00927598536413	5.65042252041071	5.71945866575064	5.40660182374739	5.59324402874319	0.302894753518353	0.378671640462886	0.681198988427369
Merged-chr13-51846607-4	chr13	51846506	51846706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011817)	promoter-TSS (NM_011817)	-69.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	8.08145096197515	8.38233648135746	8.20259707969998	8.0583059550459	8.37052000629787	8.52769489959957	8.332001819497	8.21509423427746	0.229539284670147	0.16840563703699	0.460469608122923
Merged-chr13-73434205-4	chr13	73434126	73434326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33157.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	5.69364066837326	5.40351227870269	5.85757048183916	6.0027948033994	5.37492507413006	5.32651965185304	5.53583231606858	5.95788360851325	-0.331011010710835	0.279933130027436	0.591994778721935
Merged-chr18-62224903-4	chr18	62224802	62225002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44802.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	5.48397262578531	5.87788023500497	5.26003101885265	5.58242387368954	5.60108036039504	5.47474501597327	6.20670212919434	5.79311383739194	0.369991498247569	0.229217571217688	0.538064210405535
Merged-chr17-31254774-2	chr17	31254690	31254890	+	727.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025290)	TTS (NM_025290)	22566.0	NM_025290	22092.0	Mm.12743	NM_025290	ENSMUSG00000024033	Rsph1	MCA|Tsga2	radial spoke head 1 homolog (Chlamydomonas)	protein-coding	2.84221242697918	2.75395428976758	2.55230471273778	2.64373372244745	3.17925405308525	2.95168430278684	3.06792330660846	3.13229674765914	1.73896835579944	0.00488563798928562	0.0467349585323695
Merged-chr17-8311869-4	chr17	8311781	8311981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073374)	promoter-TSS (NR_073374)	-763.0	NR_073374	75060.0	Mm.426530	NR_073374	ENSMUSG00000087478	4930506C21Rik	-	RIKEN cDNA 4930506C21 gene	ncRNA	5.6009106367518	5.51932402955734	6.17821075705811	6.20751121106302	6.18063942922484	5.94278534611597	5.92572315881175	5.97377338218207	0.135481482489749	0.638441687764484	0.847153284197798
Merged-chr17-79663626-3	chr17	79663531	79663731	+	950.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201361, intron 5 of 10)	(TG)n|Simple_repeat|Simple_repeat	48731.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	4.55148429622901	4.2826869342372	4.40295725098219	4.68767373221915	4.00534694253052	3.80089656719422	4.07288230865526	4.08761311434382	-1.26914566839349	0.00253308424391858	0.0280364489811664
Merged-chr6-116083433-4	chr6	116083356	116083556	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-88451.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	5.06669497055422	5.61717715546752	4.81236935511084	5.3316240733897	4.96411700235493	5.06710800098843	4.90432590868808	4.49288401009893	-0.718304562120437	0.0493704414553617	0.229892624123459
Merged-chr15-75920380-5	chr15	75920229	75920429	+	942.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025412, intron 1 of 5)	intron (NM_025412, intron 1 of 5)	1231.0	NM_025412	66194.0	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding	3.12546979655864	3.07614894078719	3.24228423033843	3.14347842961567	3.27425832390782	3.10696313199079	3.47761299342376	2.92809225049958	0.261080184996876	0.648829911231744	0.852446885967846
Merged-chr3-31093786-4	chr3	31093699	31093899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1259.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	8.35284719767291	8.55545907091481	8.09700303426854	8.125772859373	8.46698385484164	8.60041748248853	8.57249113299712	8.150006963498	0.208681886628894	0.262865029190815	0.574717656257213
Merged-chr10-54154153-2	chr10	54154053	54154253	+	818.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78231.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	3.60502238187056	3.37609505383238	3.31037741774082	3.73905165247591	3.74199927155218	3.61045710155498	3.53786499633463	3.79859873332032	0.452506310825671	0.374608693645186	0.677891254741963
Merged-chr14-25464753-3	chr14	25464648	25464848	+	728.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	5563.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	4.08002282851591	3.86656697227281	3.65965230072373	3.94375916927819	3.56918508642577	3.88595553706476	3.40629661980122	3.54214125428198	-0.877806194562536	0.0747575173646954	0.294884929316375
Merged-chr15-74679246-3	chr15	74679109	74679309	+	749.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6639.0	NM_018790	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	2.96198731913465	2.86477983596788	3.18779873139716	2.80702318315914	2.9390283241345	2.79599969989016	3.17400240803581	2.96086973721883	0.0813701743390613	0.894305974109984	0.960481560907683
Merged-chr1-54500746-2	chr1	54500646	54500846	+	718.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163314, intron 19 of 26)	RLTR45|LTR|ERVK	56938.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	3.65803031993714	3.1852688916567	3.23993125024534	3.00354592101531	3.35371490094376	3.35392301959209	3.50188393317085	3.29857293581076	0.338105665966518	0.54811512211951	0.797236209191938
Merged-chr1-171223411-3	chr1	171223296	171223496	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037170)	promoter-TSS (NM_001037170)	-882.0	NM_001037170	641376.0	Mm.288374	NM_001037170	ENSMUSG00000005674	Tomm40l	-	translocase of outer mitochondrial membrane 40-like	protein-coding	3.5483488458114	3.68190088210063	3.94403324183209	3.51641064634172	5.03272518997934	4.71321764635975	4.51719897078361	4.57321244842528	2.67900240175369	3.398037289267e-10	2.39034419210483e-08
Merged-chr6-97148784-6	chr6	97148649	97148849	+	892.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175313, intron 1 of 17)	CpG	134.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	4.04458772353602	4.14549341395539	4.44843692742105	4.42130615322946	4.11707991726532	4.22234584975657	3.9205259460623	4.65647400291936	-0.0641206750224857	0.883825875740151	0.956344438085205
Merged-chr6-92091431-4	chr6	92091334	92091534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011630)	promoter-TSS (NM_011630)	16.0	NM_011630	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	6.57058552320298	6.58094641039232	6.53943549345214	6.88886454108672	6.52156645683109	6.7476985635932	6.52219958679733	6.15628395442252	-0.237752930257741	0.309171886062187	0.621601154648488
Merged-chr1-178360910-1	chr1	178360810	178361010	+	621.0	f0_balb.idr	Intergenic	RLTR13D3|LTR|ERVK	-23095.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	3.36757398373591	3.779517158398	3.67790035893899	3.25944742444508	3.60298415757893	3.29248413168423	3.23478954394718	3.10995961882739	-0.694702159154343	0.231759065275602	0.541273042204025
Merged-chr10-62339526-4	chr10	62339411	62339611	+	969.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 4 of 21)	intron (NM_010438, intron 4 of 21)	910.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	4.29385118568247	4.19775319774963	4.46295479486996	4.176868068163	4.61484567696848	4.51047568255932	4.27551694535833	4.14947346423198	0.310709176611127	0.430947045430231	0.721325279470979
Merged-chr6-35587124-3	chr6	35587024	35587224	+	865.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-47236.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	3.34509494895923	3.27719092286161	3.07852418865142	2.8286767453952	3.39680222250416	3.46420083490271	3.86518978161973	3.84154372128036	1.82429080891921	0.00137525397061916	0.0174228001061199
Merged-chr1-177796679-4	chr1	177796561	177796761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007422)	promoter-TSS (NM_007422)	-152.0	NM_007422	11566.0	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	9.83523646314797	9.83149145119989	9.84466578655701	9.89194858773383	9.55661333266823	9.90991212303959	9.99072158332694	9.67471084108682	-0.0717011697367592	0.635924976519667	0.845984638364879
Merged-chr2-68888332-4	chr2	68888190	68888390	+	978.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	26849.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	4.69793499976649	5.266183905116	5.23947868554909	5.51026359210142	4.41212110134764	4.74790541279209	4.86973846449573	4.41665613228588	-1.21975150678236	0.0012258271397836	0.0158296716223978
Merged-chr2-168205444-4	chr2	168205344	168205544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310086, intron 1 of 4)	intron (NM_001310086, intron 1 of 4)	1668.0	NM_009628	11538.0	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	6.39584674556014	6.70419633851962	6.43256789480316	6.20320273049727	6.52419507134403	6.55560905894883	6.89706364546741	6.27927876768824	0.21062312683471	0.388893807509677	0.68923540472913
Merged-chr2-77280810-4	chr2	77280711	77280911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175465)	promoter-TSS (NM_175465)	-219.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	6.04181862409624	6.4124884010202	5.82413243042609	5.95815880858532	6.44933620462447	6.46154645866097	6.57537539908011	6.12487639960956	0.510136900772954	0.0430496312231797	0.211093255775331
Merged-chr4-15989062-3	chr4	15988947	15989147	+	905.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013752, exon 14 of 16)	exon (NM_013752, exon 14 of 16)	24791.0	NM_001355615	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	3.56322357443958	3.23715635294291	3.40779799720201	3.64728883205718	3.39969325435617	3.4045835398512	3.01784886733677	3.45999477334148	-0.507579122487598	0.364637378577294	0.669396847542187
Merged-chr4-114997900-3	chr4	114997812	114998012	+	726.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2206.0	NM_001304559	20460.0	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	3.51283897474137	3.28158635280877	3.66616224617847	3.24296262049144	3.28612581473775	3.25460923877135	3.82626728151195	3.6150275242796	0.286314899234507	0.601958911876464	0.827350609957033
Merged-chr17-31583540-2	chr17	31583440	31583640	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027493, intron 2 of 11)	intron (NR_027493, intron 2 of 11)	18767.0	NM_016670	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	2.41791723671042	2.15961774055011	2.30376700162693	2.03395681228811	1.99369698700785	1.89703082052421	1.95843312398457	1.96236874894659	-2.1319232569752	0.0220793681812016	0.136856643118891
Merged-chr2-119300344-4	chr2	119300259	119300459	+	955.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11617.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	4.9636268448757	4.85248705219481	4.40823710713525	4.69608076504354	4.65915821209025	4.92794964272551	4.97159600397631	4.71306259543726	0.154577129518033	0.661043095222269	0.859233242450522
Merged-chr8-39651913-4	chr8	39651810	39652010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-9232.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	7.06270230691385	7.24469480789616	7.31099034008205	7.50534509729126	6.45661466242053	6.28875776630616	6.18921833238251	6.05221684322822	-1.46928208745218	5.05016456121625e-11	4.04803674890553e-09
Merged-chr11-54438580-4	chr11	54438456	54438656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 1 of 17)	CpG	377.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	5.16019396285484	4.9521813421393	4.76978989476183	4.83773381742778	5.01314408678369	4.86459473274817	5.56719817583285	5.06219671148609	0.427157450053448	0.210453528589371	0.514939122521843
Merged-chr2-92296618-4	chr2	92296517	92296717	+	933.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109690, intron 3 of 15)	intron (NM_001109690, intron 3 of 15)	74440.0	NM_001290774	228366.0	Mm.31158	NM_172670	ENSMUSG00000040434	Large2	5730485C17Rik|AI891893|Gyltl1b|Largel|mKIAA4105	LARGE xylosyl- and glucuronyltransferase 2	protein-coding	5.09149763026668	4.74217981851131	4.61694793845478	4.88617420805741	5.06147590488839	4.87874081464837	4.94001394884029	4.96069682201795	0.23749081515039	0.469398056271686	0.748309799712476
Merged-chr6-146170829-5	chr6	146170698	146170898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 51 of 56)	ORR1E|LTR|ERVL-MaLR	236676.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	5.83902084869334	6.00376031536557	6.28859777852467	5.76836081911018	5.25620708886687	6.03838523453582	5.76271291677469	5.60532237764796	-0.486533018867793	0.103829068680829	0.354152256068274
Merged-chr14-57745561-4	chr14	57745473	57745673	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015771, intron 1 of 7)	CpG	550.0	NM_015771	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	4.91799644374987	5.3376113482622	5.17747649861821	5.39132448050666	5.44362036104198	5.35334842957468	5.64169948680512	5.33120751542398	0.380421069541651	0.206395807094084	0.510336164002841
Merged-chr4-123686977-1	chr4	123686877	123687077	+	669.0	f0_balb.idr	Intergenic	CpG	-2617.0	NM_001199136	11426.0	Mm.402299	NM_009600	ENSMUSG00000028649	Macf1	ABP620|Acf7|Aclp7|MACF|R74989|mKIAA0465	microtubule-actin crosslinking factor 1	protein-coding	2.96286068127053	3.14753718002318	2.76603844362957	2.91426400394873	2.87188422822325	3.00842832209438	3.06763285787921	2.9617532251171	0.091993871195336	0.87789002600111	0.954314763971155
Merged-chr8-68914753-4	chr8	68914801	68915001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	34346.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	5.13564092084727	5.15649791706482	5.29395300480214	5.21334829768699	5.24417182100562	5.17204820022844	5.20753399530478	5.48196354261137	0.146730608918528	0.613881281455952	0.833585997266986
Merged-chr12-30282709-2	chr12	30282565	30282765	+	940.375	f0_balb.idr|f1_balb.idr	intron (NM_001324521, intron 6 of 15)	intron (NM_001324521, intron 6 of 15)	90710.0	NM_172951	268534.0	Mm.279765	NM_172951	ENSMUSG00000020672	Sntg2	2210008K22Rik|9530013L23|BB121248|G2syn|Syn5	syntrophin, gamma 2	protein-coding	4.05787980011099	3.45937751929906	3.50850716113801	3.83123945993631	2.85288190176316	3.03387282485224	3.13468816409322	3.14353144893774	-2.8479436853191	1.73310120083464e-05	0.00044969620621403
Merged-chr3-20348390-4	chr3	20348286	20348486	+	962.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175086, intron 1 of 1)	MusHAL1|LINE|L1	18791.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	4.75595840718652	4.86337003785913	4.79514466050346	5.20456060248556	4.54504106245688	4.85205613162404	4.97954248699319	4.7919864708456	-0.293606441546163	0.406182609198495	0.702759448977807
Merged-chr14-59441530-3	chr14	59441407	59441607	+	917.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001320725)	promoter-TSS (NM_001320725)	544.0	NM_001360592	69008.0	Mm.179091	NM_026908	ENSMUSG00000021981	Cab39l	1500031K13Rik|2810425O13Rik|4930520C08Rik|AA589432|MO2L	calcium binding protein 39-like	protein-coding	3.31865645358392	2.9971061197677	3.04455040306922	2.99750040932696	2.94685012782555	3.09102794349349	3.03372663829765	3.10276912927321	-0.197518712527234	0.732409839462308	0.893963778565797
Merged-chr11-8660076-4	chr11	8659992	8660192	+	927.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	4443.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.58935638027895	5.34427593776625	5.47259950592416	5.42087910062578	4.99328599403303	4.76385182095348	4.73997425046526	4.47301420564038	-1.3180592162008	7.5254868155428e-05	0.00159232052926136
Merged-chr12-84876974-4	chr12	84876879	84877079	+	975.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013589)	promoter-TSS (NM_013589)	-484.0	NM_013589	16997.0	Mm.3900	NM_013589	ENSMUSG00000002020	Ltbp2	AW208642	latent transforming growth factor beta binding protein 2	protein-coding	5.9380354848843	6.09406364229802	5.16916590386868	5.8815374335627	5.87593850736541	5.93034051438188	5.77407009512058	5.64787908553989	-0.0154583836804123	0.958734576037486	0.985261653135995
Merged-chr8-72008537-4	chr8	72008445	72008645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024444, intron 2 of 12)	intron (NM_024444, intron 2 of 12)	1081.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	7.19755394206493	7.1946139116588	7.34636989268484	7.35998008332599	7.21275844706385	7.12993543057893	7.3098698579846	7.17120142128018	-0.099006406176347	0.582747401733235	0.816777579274426
Merged-chr13-41502553-3	chr13	41502476	41502676	+	971.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-15216.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	3.48612223849239	3.73744330139842	3.4865946499997	3.53769291504829	3.37986114624499	3.90555739412482	3.29576363006208	3.17113538681489	-0.327878570378856	0.552675139260464	0.799868677982226
Merged-chr4-134535324-4	chr4	134535221	134535421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029759)	promoter-TSS (NM_029759)	-53.0	NM_001355187	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	7.5253758621455	7.73629674524139	7.41939482739249	7.7584294564713	7.86187896340738	7.66619634069193	7.85113085434884	7.56734273991874	0.157153344977014	0.390822239003071	0.690744075435145
Merged-chr6-77335742-3	chr6	77335641	77335841	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145732, intron 8 of 18)	ORR1E|LTR|ERVL-MaLR	46734.0	NR_045141	70753.0	Mm.490700	NR_045141	ENSMUSG00000108077	6330415B21Rik	-	RIKEN cDNA 6330415B21 gene	ncRNA	4.95560296808259	4.96052467961856	5.01801336022603	5.55305724292368	3.97067966841328	4.34293810042014	4.07736472756542	4.15050926453274	-2.36472918293186	9.74318024922676e-09	5.1754464698486e-07
Merged-chr19-5848233-4	chr19	5848151	5848351	+	939.7374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2771.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	4.40025870962261	4.43325971368677	4.89842159698735	4.36798869902942	4.26984580019113	4.23623148842448	4.38109119818826	4.52240836818758	-0.413222354876834	0.295584766074095	0.607513569466314
Merged-chr19-6951617-4	chr19	6951515	6951715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007522, exon 4 of 4)	3' UTR (NM_007522, exon 4 of 4)	9053.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	7.56749087751509	7.31891589737561	7.20319659229824	7.13375785037938	7.53012802300864	7.58116245717945	7.2765453785003	7.44696739099249	0.210860712718722	0.274641102315537	0.586395867106146
Merged-chr18-82863203-4	chr18	82863126	82863326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	7329.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	6.18982472395946	5.89755883734214	5.91618612480757	6.23925623461985	6.2087552012074	5.89055938083656	6.08134265960724	6.16737575166494	0.0281190888452968	0.909102730323123	0.966201647731837
Merged-chr10-88676388-4	chr10	88676298	88676498	+	874.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011461, intron 5 of 5)	intron (NM_011461, intron 5 of 5)	6625.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	4.77743896443929	4.43415152192499	4.39272526334979	4.38018579501197	4.27703296863154	4.42864404038652	4.50021869002242	4.80769072077658	0.0319399432337012	0.934149269117315	0.976284535018447
Merged-chr13-49100599-4	chr13	49100493	49100693	+	995.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 4 of 29)	intron (NM_001290313, intron 4 of 29)	47735.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	5.87346493729404	4.83341718081745	5.95786414827191	6.06714738462001	5.6749443739687	5.24159130397206	5.66001240059597	5.7339339992145	-0.292883263517872	0.420090655293938	0.713072018633276
Merged-chr4-126741663-4	chr4	126741563	126741763	+	766.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5394.0	NM_198960	332937.0	Mm.331881	NM_198960	ENSMUSG00000042477	Tfap2e	AI505200|AP-2e|Tcfap2e	transcription factor AP-2, epsilon	protein-coding	3.9656272357909	4.24566250197666	4.01759487134981	4.04217924427135	4.04663495678055	4.19117104526463	4.34751884651623	4.11220349539738	0.262804620287055	0.520680287984214	0.780877030797574
Merged-chr2-129384108-4	chr2	129383932	129384132	+	857.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR10_RN|LTR|ERVK	-12893.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	3.01992710322782	2.74572276507401	3.13915069113059	2.7558755563815	3.12037227941282	3.13166355997319	3.12655792519975	3.24599874658162	1.00154812211722	0.0905050688598647	0.328619700583612
Merged-chr2-164641318-4	chr2	164641223	164641423	+	934.8624880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2521.0	NM_001012723	277345.0	Mm.247244	NM_001012723	ENSMUSG00000070530	Wfdc16	BC043944|WAP16	WAP four-disulfide core domain 16	protein-coding	4.63118667815276	4.39511989646829	4.1788654410577	4.49663542072322	4.64575790867146	4.80318383495026	4.44890409624099	4.83925186674336	0.550312595814722	0.137000544287807	0.411597237120623
Merged-chr10-75151536-4	chr10	75151432	75151632	+	936.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081412, intron 8 of 22)	intron (NM_001081412, intron 8 of 22)	-60541.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	4.93984431958914	5.18944087913813	4.20055599161621	4.90540079617828	4.58223411640383	4.81947412849203	4.74041463560655	4.93729581822381	-0.182621522691208	0.643123306780077	0.849459897971419
Merged-chr12-102379165-4	chr12	102379072	102379272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	60641.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.62460581843178	5.87070035759763	5.30209309386082	6.30885631131828	5.21235659234202	5.63634544996126	5.34061970216149	5.51328071042451	-0.711115848783336	0.031889858554744	0.174325185628456
Merged-chr17-57183075-3	chr17	57182991	57183191	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11090.0	NM_019418	50930.0	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	3.15865405814366	3.23734495305486	2.90406202394147	3.1387434843513	3.1000194960733	3.14661296199186	3.14731038832161	3.2680658255196	0.181996437227673	0.745669898416692	0.89965485286124
Merged-chr5-32168664-4	chr5	32168576	32168776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32204.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	6.06142709536978	6.54718814526188	5.75338977666769	5.38799142279307	6.37755457190346	6.69195328833478	5.77635143710198	5.80191222220154	0.329096409750578	0.353787765087511	0.660604914248793
Merged-chr13-100676338-6	chr13	100676251	100676451	+	823.235718	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168386, intron 1 of 9)	intron (NM_001168386, intron 1 of 9)	6870.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	3.85909590361527	3.51063591910445	3.63492107505447	3.60359759266051	4.02472312873029	4.30571428996336	3.94167815746156	4.17573633591388	1.29882277489245	0.00353198620526674	0.0363142057062951
Merged-chr5-124439790-4	chr5	124439681	124439881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030241)	promoter-TSS (NM_030241)	-149.0	NM_030241	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	8.30003207521417	8.66814752961791	8.58310708478393	8.49245812443238	8.46037335922214	8.71855520515295	8.43357058811397	8.38440954190459	-0.0184736262427522	0.911480664113988	0.96695373445261
Merged-chr8-88175437-1	chr8	88175337	88175537	+	566.0	f0_balb.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-23776.0	NM_001164499	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	2.5746435622468	2.56706029974535	2.45662397766459	2.64774461401616	2.01651754682831	2.20264654186371	2.17626090752991	2.10212020729496	-3.96178556596119	0.000334346070095316	0.0055461241955988
Merged-chr11-118363231-4	chr11	118363150	118363350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7839.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	6.07118245586396	6.82978259217951	6.53473914671026	5.91131474161209	6.33645392454056	6.5097803804173	5.90056422817813	6.41680347742698	-0.109490412060983	0.712249879822711	0.884804781356341
Merged-chr11-106821201-4	chr11	106821094	106821294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025481, exon 19 of 19)	3' UTR (NM_025481, exon 19 of 19)	31942.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	5.55611088515095	5.27338262857391	5.08890450792126	5.13641013424175	5.49971156222387	5.23020867189993	5.16549715925406	5.31161528842803	0.0919942285553599	0.762109875617848	0.906790451164864
Merged-chr11-11554298-2	chr11	11554198	11554398	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65032.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	2.83076471705927	2.88903296333789	2.97516421731512	2.99935019147675	3.71602070326554	3.21802575217656	3.21142765279299	3.33103899168338	1.76557591841718	0.00315014842668231	0.0331741995654417
Merged-chr11-53430958-5	chr11	53430901	53431101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001326614)	promoter-TSS (NM_001326614)	-170.0	NM_001326614	22272.0	Mm.251621	NM_025352	ENSMUSG00000044894	Uqcrq	1100001F06Rik|1500040F11Rik|5830407L17Rik|9.5kDa|AA959903|QP-C|Qpc|Uqcrb|c1502	ubiquinol-cytochrome c reductase, complex III subunit VII	protein-coding	7.83847737035714	8.06091660519467	7.43187207579672	7.34365416645083	8.32946414161647	8.2260888019599	7.93078756698997	7.97055114704137	0.556145272620261	0.0110103530010004	0.0845421700386413
Merged-chr12-33316008-4	chr12	33315914	33316114	+	891.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	13499.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	4.52298761508372	4.78617890168477	4.43453145048117	4.82306024283969	4.57805389762522	4.565216057278	4.96282301056419	4.52084470610274	0.00294503545093396	0.993639636937537	0.997702270136287
Merged-chr6-17652327-4	chr6	17652199	17652399	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 3 of 9)	ORR1E|LTR|ERVL-MaLR	15289.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	5.53523252129469	4.98218923414097	5.53621376299866	6.12565040484313	4.90035928858931	4.94923705003921	4.87089390184906	5.37113889120803	-1.05775609462928	0.00461434473336164	0.0447715981155872
Merged-chr7-80835480-4	chr7	80835382	80835582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-26626.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	5.61840784988166	5.69228911945634	6.16650530668074	5.96162396902721	5.6309637625375	5.62224607386108	5.67024810653733	5.84063152216446	-0.310958018439645	0.249898770790033	0.560997401396024
Merged-chr10-127509124-4	chr10	127509004	127509204	+	916.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177707)	TTS (NM_177707)	-5835.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	4.31722820608021	4.70853780261432	3.92120074758202	4.25670491041708	4.35316557028332	4.25705005387726	4.56585744685018	4.02813802771672	-0.0404595969143048	0.926945008089226	0.97320240249562
Merged-chr3-152428757-4	chr3	152428635	152428835	+	957.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001287139, exon 4 of 14)	exon (NM_001287139, exon 4 of 14)	32051.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	5.23020088602068	5.07534063910001	5.58351633908238	5.8187264959186	5.28551773854176	5.09326737698658	4.7215217757749	5.06085565525113	-0.750362911725371	0.0319295810988941	0.174488725761089
Merged-chr6-135184003-4	chr6	135183899	135184099	+	951.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	-4481.0	NR_040296	100502888.0	Mm.437844	NR_040296	ENSMUSG00000108239	Gm19434	-	predicted gene, 19434	ncRNA	4.84137218961894	5.0569664337366	4.89209752732098	4.65542601224662	7.08492692292044	6.82533786450576	6.87218782959735	6.54746491039237	3.21424093876152	1.15315083108656e-33	1.82400273346467e-30
Merged-chr6-136861185-3	chr6	136861031	136861231	+	829.9111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3531.0	NM_026639	109978.0	Mm.31840	NM_026639	ENSMUSG00000030217	Art4	4432404K01Rik|ARTC4|DO|DOK1	ADP-ribosyltransferase 4	protein-coding	4.10544459088478	3.89118507626769	3.84161729681836	4.06134593847769	3.4944496010005	3.68730281054545	3.43217486233875	3.73744581104217	-1.20565757559554	0.0118563705618911	0.089143825945373
Merged-chr11-68555505-3	chr11	68555401	68555601	+	947.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146004)	promoter-TSS (NM_146004)	-685.0	NM_146004	215723.0	Mm.131205	NM_146004	ENSMUSG00000048329	Mfsd6l	-	major facilitator superfamily domain containing 6-like	protein-coding	3.98788486563249	4.09197568367568	4.07947830919339	4.09011968238062	3.68101589365113	3.59326942510523	3.6559807320208	4.24093582580213	-0.684610059469738	0.149267717383924	0.431443468515808
Merged-chr5-114783856-4	chr5	114783748	114783948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026718, intron 1 of 14)	Tigger7|DNA|TcMar-Tigger	8708.0	NM_026718	68420.0	Mm.275554	NM_026718	ENSMUSG00000041870	Ankrd13a	1100001D10Rik|ANKRD13|AU046136	ankyrin repeat domain 13a	protein-coding	5.12202743694216	6.3864232219508	5.31310248584044	4.87696002671684	6.4635803634824	6.36064049008647	6.20607451105825	5.70484060847938	0.995637013106251	0.0989044029717677	0.344766760435085
Merged-chr11-69666232-4	chr11	69666133	69666333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291058)	promoter-TSS (NM_001291058)	-63.0	NR_110993	12514.0	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	8.54398460194671	8.8190200785906	8.51187182427869	8.31153787493519	8.4309600767734	8.45571766902727	8.26804947502134	8.50152552178557	-0.174922376744766	0.311363752644656	0.623372743065711
Merged-chr9-40563578-9	chr9	40563427	40563627	+	950.9111330000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-32144.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	3.7596151461	3.30712845913824	3.70894914218258	3.16723251459957	3.71627017426207	3.98038983114089	3.83937460414104	3.80708760211119	1.05379575876088	0.0406413901809439	0.203786568178611
Merged-chr3-8736177-4	chr3	8736093	8736293	+	975.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69155.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	5.65952451360683	5.81735125155771	5.90391312934384	5.97163924466602	5.78637447016536	5.93891568920695	6.11317371211985	5.28664885882588	-0.0569155198436704	0.842873538122016	0.940323698985438
Merged-chr15-83205307-3	chr15	83205220	83205420	+	861.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33112.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	3.60088284339902	3.42031007450029	3.75163670227945	3.43737236255158	3.71488865861338	3.41794386090947	3.53332712921233	3.79561664794496	0.247754168586574	0.617655543711569	0.835660595815354
Merged-chr18-90510135-4	chr18	90510052	90510252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198295)	promoter-TSS (NM_198295)	-2.0	NM_198295	67988.0	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	8.41304571174135	8.44553527448161	8.67250052167365	8.56798677375038	8.37629284520602	8.44271962299144	8.32756922632209	8.33374018963068	-0.201281972213765	0.184869098776648	0.482566571028884
Merged-chr12-102877586-6	chr12	102877495	102877695	+	968.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172806, intron 1 of 11)	CpG	811.0	NM_172806	238386.0	Mm.63456	NM_172806	ENSMUSG00000041702	Btbd7	5730507E09Rik|8030448M07|E130118E17Rik|FUP1|mKIAA1525	BTB (POZ) domain containing 7	protein-coding	3.91891836368837	4.25631915800838	4.27865779857785	4.62994143716177	4.29336816087976	4.31164408882564	4.46419669127743	4.3200590980198	0.0715974942226525	0.865777476856846	0.949727926552738
Merged-chr19-61265918-2	chr19	61265818	61266018	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37500.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	3.79749474780721	3.39889375072976	3.63377005039657	3.79524619581811	3.92129331752185	3.91951739032533	3.5611328539424	4.29808561028357	0.794705590751977	0.112362257091373	0.370578866532613
Merged-chr3-33956443-4	chr3	33956307	33956507	+	814.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63672.0	NM_008053	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	3.79606875596558	3.98056964917136	3.68701442404862	4.10040811817716	4.31549341787784	3.61961518891806	3.67325011885919	3.7409246163025	-0.064810914363118	0.898967483691362	0.962375626232471
Merged-chr15-76350174-3	chr15	76350063	76350263	+	907.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025340, exon 2 of 9)	exon (NM_025340, exon 2 of 9)	947.0	NM_025340	106025.0	Mm.41463	NM_025340	ENSMUSG00000022552	Sharpin	0610041B22Rik|AW121341|RBCKL1|SIPL1|cpdm	SHANK-associated RH domain interacting protein	protein-coding	3.39904536359995	3.43731147753583	3.51424809591405	3.57535744590246	3.63306257347512	3.57231931969868	3.55380623843638	3.6175738658482	0.341234219589576	0.479357686201948	0.755076401136965
Merged-chr8-68993409-4	chr8	68993346	68993546	+	918.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95290.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	4.38214496630127	4.4074558884569	4.54086301484176	4.70238592449914	4.00449493675753	4.37737323410372	4.18443371769152	4.09948285523747	-0.879215754172085	0.0274897699534241	0.158155054600289
Merged-chr16-10433528-4	chr16	10433437	10433637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013778, intron 1 of 6)	intron (NM_001013778, intron 1 of 6)	13825.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	7.21871094970743	7.51583985711248	7.18752828970135	6.79632308292462	7.16756913517647	7.13719042520127	6.8154521406893	6.80165040262033	-0.275739127799293	0.236964790402537	0.547052091300172
Merged-chr13-100451335-4	chr13	100451212	100451412	+	943.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008670, intron 1 of 15)	ID_B1|SINE|B4	1552.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	4.58012550287588	5.4128645272338	5.19223572093778	3.97057613158617	5.71864072738942	5.0634761398003	5.22494508075313	5.02642967671768	0.707369641516222	0.121236360065153	0.385520142649995
Merged-chr7-35086042-2	chr7	35085942	35086142	+	997.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-29476.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	2.99656577196933	2.84151167068407	2.9373229374038	2.80965897152861	3.01039641555939	2.98218821334389	2.86530690821942	2.99537460875933	0.326358805240261	0.578271974948558	0.814598063672125
Merged-chr13-101768284-4	chr13	101768177	101768377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077495)	promoter-TSS (NM_001077495)	-60.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	7.9891329657199	7.80147610738478	8.39914001013924	8.15585072508418	8.34614982260321	8.11079454490667	8.23272150209861	8.27732861903429	0.181431734919028	0.323242883060858	0.634723859234428
Merged-chr3-107081473-4	chr3	107081380	107081580	+	989.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20087.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	4.90520935413243	5.22063591160773	4.98363516974257	5.12892861429072	5.3205572341056	5.76945431642724	5.16642605388718	5.25095106334713	0.58487874727656	0.0640297568663329	0.268784498761757
Merged-chr7-92725618-3	chr7	92725520	92725720	+	774.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15839.0	NR_015510	666737.0	Mm.473620	NR_015510	ENSMUSG00000074024	4632427E13Rik	AU015482	RIKEN cDNA 4632427E13 gene	ncRNA	3.43580972918253	3.68334507087371	3.50061897764719	4.08444546759617	4.11441917829406	3.61675903367871	3.66294784421455	4.05338535702876	0.474826311878926	0.380343946636079	0.682769710161395
Merged-chr10-77713947-3	chr10	77713833	77714033	+	814.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287074, intron 1 of 11)	intron (NM_001287074, intron 1 of 11)	-1874.0	NM_001205035	100502921.0	Mm.486156	NM_001205035	ENSMUSG00000094146	Gm10142	-	predicted gene 10142	protein-coding	3.69002138100436	3.91531442786278	3.74261841428715	3.9470598857772	3.26534308709884	3.50910292812221	3.82407441655972	3.79041097410174	-0.68438796172223	0.179684807641861	0.475928644273867
Merged-chr8-124897861-4	chr8	124897770	124897970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111141)	promoter-TSS (NM_001111141)	-16.0	NM_001111141	244666.0	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	7.07223384229935	6.98739170793082	6.78594324505267	6.89480867610548	7.11600598503544	7.11444755735576	6.76602640759002	6.93302066206052	0.0790671265600134	0.693365833431223	0.875305395019895
Merged-chr5-142764489-3	chr5	142764395	142764595	+	762.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122730, intron 12 of 27)	intron (NM_001122730, intron 12 of 27)	52892.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	3.6684714041645	3.65718050515277	3.66899322457355	3.5867808446099	3.54305342168229	3.56309373451147	3.54987837931019	3.615363180434	-0.239422502474876	0.611814851445279	0.832569290540731
Merged-chr13-23730639-3	chr13	23730529	23730729	+	843.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8178.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	4.03401852210487	3.65238435842268	3.91830663382359	3.26511748283567	4.7398772201248	5.1582964272639	4.5185408588459	4.71651859403124	2.704709909805	3.90970045467673e-09	2.24607400051199e-07
Merged-chr2-79132388-4	chr2	79132271	79132471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123055.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	7.73478497023249	7.81238968163151	7.81292747197126	7.75830117531669	7.69048043855236	7.89740731141662	7.31257161920073	7.46719467946341	-0.220480977870961	0.242228671938759	0.552916481413876
Merged-chr2-122637830-4	chr2	122637732	122637932	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004174)	promoter-TSS (NM_001004174)	-55.0	NM_001004174	433470.0	Mm.36783	NM_001004174	ENSMUSG00000033213	AA467197	Nmes1|mir-147	expressed sequence AA467197	protein-coding	5.43790781679865	5.50269567033832	5.01399397622172	5.03322555340574	5.15434744040571	5.79173528180358	5.6148195569203	5.34880115201212	0.413864958863652	0.202267705754314	0.504732469151556
Merged-chr12-83972335-4	chr12	83972231	83972431	+	976.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15530.0	NM_134188	171210.0	Mm.371675	NM_134188	ENSMUSG00000021226	Acot2	AA571646|MTE-I|Mte1	acyl-CoA thioesterase 2	protein-coding	4.95011113390418	5.295506516933	4.75941683314103	5.01119976204698	5.06625560018017	5.05263943126326	4.85467679875679	5.0500042241513	-0.0241738289981665	0.940586963949851	0.978654793543509
Merged-chr10-128781233-4	chr10	128781134	128781334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9676.0	NM_001164197	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	5.86025611486158	5.84000980573102	6.24693196552554	6.19230720408286	5.89281460216447	6.08788149063049	6.40202536648839	6.46175800491034	0.261505057724454	0.325760027416958	0.637293123117625
Merged-chr17-36123667-3	chr17	36123616	36123816	+	913.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-2272.0	NR_046286	15024.0	Mm.426031	NM_010395	ENSMUSG00000079491	H2-T10	H-2T10	histocompatibility 2, T region locus 10	protein-coding	2.29935914745163	2.250559943475	2.29953929427537	1.99329736117714	3.28775392835106	2.93220949477043	2.67499354063661	3.13880206139113	6.97874197454716	2.45403150164696e-11	2.08194884690976e-09
Merged-chr19-40626269-4	chr19	40626169	40626369	+	902.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	L1MA4|LINE|L1	13903.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	5.18280845333414	4.75228236672024	4.73721553599273	5.30228482562043	4.4685970119473	4.46905107944123	4.36935169315215	4.65527915999637	-1.1394916092673	0.00226948550660995	0.0257880204948038
Merged-chr5-30950039-4	chr5	30949974	30950174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003522)	promoter-TSS (NR_003522)	8.0	NR_003522	57742.0	Mm.389615	NM_021304	ENSMUSG00000006638	Abhd1	LABH-1|LABH1	abhydrolase domain containing 1	protein-coding	7.30215966214009	7.43887192924344	7.2292797712995	6.9904441399702	7.27243105883597	7.41695739375486	7.17117121599582	7.02360204496278	-0.0165008206702273	0.935123038580909	0.976465285317276
Merged-chr1-136559012-4	chr1	136558923	136559123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65878.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	6.37274806133236	6.14946810927644	6.37387668760646	6.23606401353746	6.26113758137389	6.15680335755829	5.97217077767624	5.9285353141734	-0.283967105583758	0.227799051382738	0.536477920803729
Merged-chr11-20632459-4	chr11	20632351	20632551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038625, intron 1 of 1)	CpG	474.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	6.44690402146545	6.85908621175925	7.22636929905057	6.62326996254152	7.21602298515552	7.38178387339986	6.55930994577209	7.31115713119549	0.466676071888721	0.0779019396666639	0.301817013037964
Merged-chr5-143652035-4	chr5	143651966	143652166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163548, intron 1 of 12)	MLT1N2|LTR|ERVL-MaLR	825.0	NM_001163548	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	5.64064190698889	5.25899392238839	5.66533139190373	5.44950528335948	5.55399026701679	5.32819163576637	5.15998440534185	5.24841667280519	-0.288648496589653	0.329616019536706	0.640974929073915
Merged-chr17-68172952-3	chr17	68172871	68173071	+	874.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100826.0	NM_177278	320858.0	Mm.137356	NM_177278	ENSMUSG00000041565	L3mbtl4	A730037L19Rik|D930040M24Rik	L3MBTL4 histone methyl-lysine binding protein	protein-coding	3.44134351746224	3.692190920296	3.54850549403274	3.45169637778358	3.13039990163927	3.37612803234142	3.3723286937959	3.49429130480279	-0.671714390162513	0.202270510531731	0.504732469151556
Merged-chr8-71908703-4	chr8	71908629	71908829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001166645, exon 1 of 3)	5' UTR (NM_001166645, exon 1 of 3)	123.0	NM_001166645	382019.0	Mm.251482	NM_001166645	ENSMUSG00000089857	Zfp882	Gm15468	zinc finger protein 882	protein-coding	5.29035910898676	5.10172610954263	5.6505934537684	5.00481822334459	5.13429319978112	5.27498868590898	5.20449735221572	5.19518473462591	-0.12627494799596	0.692334402589935	0.874855389914335
Merged-chr2-26315551-4	chr2	26315428	26315628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199146)	promoter-TSS (NM_001199146)	-5.0	NM_001199146	67839.0	Mm.266611	NM_153410	ENSMUSG00000026930	Gpsm1	1810037C22Rik|AW107933|Ags3	G-protein signalling modulator 1 (AGS3-like, C. elegans)	protein-coding	5.78941823488222	5.85480093315131	5.44947925742114	5.42415089590594	5.55760843069536	5.65561756808437	5.69049785410108	5.73953329941823	0.0429134264681047	0.876306813065801	0.95350060274953
Merged-chr4-3648444-4	chr4	3648335	3648535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8071.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	5.60998029464736	5.72393497482766	5.92051601467255	5.98819315202856	5.79432365235003	6.02640411495886	6.42029391130052	6.23766075288193	0.477719084459696	0.0788583218229648	0.303929244034701
Merged-chr10-128489646-4	chr10	128489551	128489751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001114096, exon 29 of 29)	3' UTR (NM_001114096, exon 29 of 29)	3358.0	NM_001317220	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	7.03035836022192	7.42484064099418	6.94030344920345	6.90306884924586	7.35943365365685	7.29356875394797	7.25544992620075	7.00123070327247	0.20311903178148	0.338655728264714	0.648109446558985
Merged-chr2-165883140-4	chr2	165883038	165883238	+	978.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281926)	promoter-TSS (NM_001281926)	-860.0	NM_001281926	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	5.05796724116912	4.83008342434879	5.18431093924984	5.24287363483097	4.7497633430239	4.622330140029	5.03405518794668	5.3989478957619	-0.213016039329923	0.550723537229533	0.798673593705145
Merged-chr10-118141745-4	chr10	118141638	118141838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010785)	promoter-TSS (NM_010785)	-49.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	9.17881993614088	9.34107361152578	9.3412934901373	9.36953623071375	9.24628605631023	9.3677022041212	9.38725580220298	9.16180040840428	-0.0230504736870183	0.870486984411206	0.951392578438799
Merged-chr11-67550006-4	chr11	67549917	67550117	+	888.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008088, intron 1 of 13)	MIRb|SINE|MIR	17019.0	NM_008088	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	3.8219638070389	4.0331483780123	4.15659681959117	3.94931004780158	4.35636146008778	4.42673568802939	4.58694491919818	4.7981161522659	1.34540818479168	0.000775624817767027	0.0109736034394433
Merged-chr7-120873136-3	chr7	120873040	120873240	+	977.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267710, intron 2 of 17)	intron (NM_001267710, intron 2 of 17)	21951.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	4.7093662484791	4.08617798854015	4.39248514257061	4.79407847303545	3.73790212687723	4.20220733404845	3.83775181595589	3.96605756823335	-1.51704007906042	0.000927433266104764	0.0126608692842484
Merged-chr8-86903314-4	chr8	86903202	86903402	+	769.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18044.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	4.23755071260635	3.98335304515405	3.86238745431887	4.14912388451018	4.18332013741254	3.9833043082326	3.79235461998302	4.15156984379346	-0.0724592962542739	0.867687771270623	0.950420077116656
Merged-chr9-105519632-3	chr9	105519521	105519721	+	750.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253831, intron 1 of 26)	intron (NM_001253831, intron 1 of 26)	1636.0	NM_001253831	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	3.10082000642163	3.14626600602089	3.02091217321069	3.07295335451781	3.83699746763796	3.94710471701037	4.05175312408168	4.06982179974591	2.97015322720692	1.15602461919518e-07	4.90081455447848e-06
Merged-chr4-86648623-1	chr4	86648523	86648723	+	885.25	f0_balb.idr	Intergenic	Intergenic	21436.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	4.20418034907662	3.7498599799399	4.08632429843357	4.26203697158471	3.31704439287491	3.50546402943385	3.68686471528458	3.64237301878097	-1.71598374789367	0.000731076224173115	0.0104797031768856
Merged-chr8-90834201-4	chr8	90834183	90834383	+	945.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 1 of 39)	intron (NM_177224, intron 1 of 39)	5448.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	4.21306277471243	4.25395442262977	3.86661418079446	4.07252592838867	4.21651950969613	4.09831380067474	4.10587498593355	4.25373884505157	0.162362943847251	0.691244653126471	0.874377621952499
Merged-chr5-110211500-4	chr5	110211405	110211605	+	730.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347389, intron 17 of 23)	MTB_Mm|LTR|ERVL-MaLR	-19499.0	NM_001253814	71782.0	Mm.288442	NM_027922	ENSMUSG00000029501	Ankle2	1110001J12Rik|AI661024|D5Ertd585e	ankyrin repeat and LEM domain containing 2	protein-coding	3.95429013988659	3.66312253923214	3.85357642428582	3.90343061752622	4.20834089161491	3.80420866477058	4.11725657751132	4.09063034967383	0.598541001421366	0.17074126748981	0.463937278381974
Merged-chr2-31785258-4	chr2	31785150	31785350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283046, intron 5 of 11)	intron (NM_001283046, intron 5 of 11)	25077.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	5.51000995846716	5.61032778680091	5.62311503162794	5.86480689355121	5.69605973133336	5.62869254131318	5.79180849788016	6.02767302075641	0.192264459324367	0.476791269865219	0.753146308287354
Merged-chr3-20423086-4	chr3	20422973	20423173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55896.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	7.12894143974285	7.27448642151009	7.8521506845431	7.73631884517595	6.85756827216533	7.30796453388529	7.30405219333512	7.18403759184263	-0.495474995355301	0.0340223392538753	0.182039847083484
Merged-chr4-46389864-4	chr4	46389779	46389979	+	870.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029086)	promoter-TSS (NM_029086)	-442.0	NM_001347095	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	3.66331378728419	3.82304523759557	3.72243780482743	3.95522211374852	4.33515986090272	4.15149209346588	3.91734288966353	3.7765657886313	0.716496542790593	0.122148648608056	0.387327089801111
Merged-chr1-36557778-13	chr1	36557648	36557848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304330)	promoter-TSS (NM_001304330)	-191.0	NM_001304329	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	4.85192348419997	5.30151834154089	5.82059671190232	5.00882831179531	5.13378362355829	5.07320762834246	5.216834479748	5.14413918908141	-0.272672816526336	0.439794896100793	0.727425871224001
Merged-chr3-94658848-4	chr3	94658745	94658945	+	931.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011656)	promoter-TSS (NM_011656)	27.0	NM_001293728	22156.0	Mm.10214	NM_011656	ENSMUSG00000005968	Tuft1	-	tuftelin 1	protein-coding	4.9924871943668	5.36798869565761	4.75748010344906	3.66914998770182	4.57052785978916	4.65001994351588	4.35346798290727	4.75420365402202	-0.523368863876636	0.29805204281379	0.610255424216985
Merged-chr15-53822089-4	chr15	53822006	53822206	+	782.62915	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 2 of 4)	intron (NM_177225, intron 2 of 4)	80330.0	NM_177225	320679.0	Mm.442455	NM_177225	ENSMUSG00000058656	Samd12	A830094I09Rik	sterile alpha motif domain containing 12	protein-coding	4.31451500785307	4.67233027813259	4.26801012660436	4.6938231972286	4.29819502007831	4.39549232414946	4.4269331161514	4.48533688435625	-0.275218500085107	0.475895868557023	0.752603574391689
Merged-chr5-72820802-4	chr5	72820698	72820898	+	958.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	47650.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	5.32440937731355	5.33124333133062	4.66510685862636	4.61118697395588	4.83767754679904	5.0029401847503	4.80435062897229	4.70453548259089	-0.356788544653408	0.34607945898619	0.654364893116659
Merged-chr18-37955590-4	chr18	37955503	37955703	+	958.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153793)	promoter-TSS (NM_153793)	44.0	NM_153793	225392.0	Mm.233516	NM_153793	ENSMUSG00000044024	Rell2	4631403P03Rik|ependolin	RELT-like 2	protein-coding	4.76533746919044	4.25804565550748	4.48487238278044	4.71303456910827	4.49792215382748	4.70490550694705	4.77843763530084	5.07936725749454	0.423699308572728	0.266324382837945	0.578066256744946
Merged-chr7-119794186-6	chr7	119794112	119794312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027698)	promoter-TSS (NM_027698)	25.0	NM_001004187	434234.0	Mm.38237	NM_028129	ENSMUSG00000030924	Rexo5	2610020H08Rik	RNA exonuclease 5	protein-coding	5.5048181155298	5.22401938530556	5.47786663960716	5.44250673815395	5.33984440861346	5.75941119350137	5.68014500552963	5.65735806209237	0.330565417606	0.239242641506868	0.549678888954725
Merged-chr13-21158986-4	chr13	21158886	21159086	+	878.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15931.0	NM_146534	258527.0	Mm.271440	NM_146534	ENSMUSG00000045474	Olfr1368	MOR256-15	olfactory receptor 1368	protein-coding	4.30468986752439	4.4038180154711	4.20787487276125	4.77220730966153	4.44199836389464	4.47980404626055	4.7538080048699	4.67210174369396	0.28162065134279	0.480783571461492	0.756140229807614
Merged-chr13-101592549-4	chr13	101592442	101592642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100088.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	5.0058851908184	5.08161214762007	5.1770930618508	5.16449020880676	5.44629245097433	5.07075756913591	5.11967712425038	5.43185237588261	0.322730595687253	0.285790119595084	0.597477154288458
Merged-chr12-28732770-4	chr12	28732685	28732885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161410, intron 3 of 11)	intron (NM_001161410, intron 3 of 11)	17609.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	6.55401011471761	7.11445528060518	6.77015522114845	6.80389754411867	6.80169414451597	6.6985523368185	6.64841053310815	6.351582399503	-0.267921677893609	0.24102131869731	0.551619163882296
Merged-chr10-13090847-6	chr10	13090643	13090843	+	761.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131912)	promoter-TSS (NR_131912)	-45.0	NM_009538	22634.0	Mm.287857	NM_009538	ENSMUSG00000019817	Plagl1	Lot1|Zac1	pleiomorphic adenoma gene-like 1	protein-coding	4.07889700903921	3.78842647475869	3.566110764275	4.06829874812829	3.64411631329643	3.80497757976486	3.9743312397033	3.98952546559745	-0.127522409047821	0.788647701607553	0.91812687233996
Merged-chr3-89213974-4	chr3	89213873	89214073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013604, exon 1 of 8)	exon (NM_013604, exon 1 of 8)	362.0	NM_013604	17827.0	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	6.2957369474297	6.25460788809018	5.97797502215843	6.08183070911745	6.20491378797125	6.15390741597856	5.99189839830724	5.9509577194806	-0.107785813458882	0.650395748941146	0.853276546196329
Merged-chr9-40732543-3	chr9	40732432	40732632	+	873.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	46568.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	4.5446248480355	4.3503017637559	4.63707294315991	4.3967006521593	3.11620268059313	3.2854470368465	3.23489895357677	3.3229766909043	-5.34578977628869	4.92819820517195e-09	2.77080742532334e-07
Merged-chr1-152796981-4	chr1	152796861	152797061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-3192.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	7.43278631377796	7.71775545264212	7.746704461809	7.45182205028314	7.59406659894713	7.44271282486905	7.58003579216421	7.61216388281356	-0.0383711409589691	0.830859822798397	0.935090067625379
Merged-chr12-100166404-4	chr12	100166310	100166510	+	774.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER77B|LTR|ERVL	-6757.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	3.76881737064048	3.9707200896213	4.06300335027517	3.83948805743278	3.728958443776	3.8891087214291	3.95516799539715	4.01601309442654	-0.042107832636085	0.923868868353556	0.971863340184091
Merged-chr4-126181324-3	chr4	126181226	126181426	+	829.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356455, intron 3 of 11)	intron (NM_001356455, intron 3 of 11)	-17985.0	NM_001162533	66938.0	Mm.29813	NM_025856	ENSMUSG00000073758	Sh3d21	1700029G01Rik|AU019788	SH3 domain containing 21	protein-coding	3.73281200166059	3.73698711363688	3.93823584927538	3.55392655191997	3.86110649008018	3.96133979272244	3.92103627208222	4.11208958304416	0.66269128391914	0.13822284269539	0.413600027627647
Merged-chr15-50819996-3	chr15	50819881	50820081	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	69068.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	5.17690463468564	5.43985507810307	5.26270981530333	4.88924279849754	4.88884504948479	4.68147810315747	4.66100773749829	4.54368110894316	-0.974360722622684	0.00582533820851864	0.0531523840974424
Merged-chr18-39487040-3	chr18	39486904	39487104	+	707.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008173, exon 1 of 8)	exon (NM_008173, exon 1 of 8)	241.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	2.82301881346127	2.78185723918419	2.5503848984495	2.70177093960837	2.70420454809914	2.86723450563115	2.87251536536473	2.99439074628307	0.658606455904981	0.296640149618465	0.608578870807483
Merged-chr9-59567323-4	chr9	59567211	59567411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11026.0	NM_175235	76183.0	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	6.21082310323135	6.14670394488603	5.91377114962598	6.2366364358152	6.24438332470598	6.26802137648358	5.99775962287752	6.02418564844824	0.00151378958955536	0.994920976280479	0.998190746524986
Merged-chr17-26973119-4	chr17	26973026	26973226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005916)	promoter-TSS (NM_001005916)	-53.0	NM_001005916	474156.0	Mm.328890	NM_001005916	ENSMUSG00000079605	Zbtb9	3930402F13Rik	zinc finger and BTB domain containing 9	protein-coding	8.24560855954397	8.19938130468613	7.93103921126534	8.17891298033364	8.29754486897292	8.20734836813011	8.23063082251696	7.94752610005789	0.0434581386536903	0.797468315662859	0.921671736576983
Merged-chr19-56673151-4	chr19	56673027	56673227	+	957.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie5|DNA|hAT-Charlie	-49245.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	4.96123486696284	4.83005810306423	5.05938734450177	5.10978514361601	5.07421245124866	4.65689074431768	4.67935965471741	4.77796951024936	-0.354762891481179	0.295724884603583	0.60765742950211
Merged-chr9-48561086-3	chr9	48560972	48561172	+	925.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44051.0	NM_010924	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	4.67547894611476	4.99104948532348	4.64464687732089	4.54432757959972	3.06724512541347	3.3755558647474	3.32020986983262	3.40947081867123	-6.75368317489588	1.5443056983063e-10	1.14741268580109e-08
Merged-chr17-24895206-4	chr17	24895135	24895335	+	978.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163102)	promoter-TSS (NM_001163102)	115.0	NM_023260	79044.0	Mm.328851	NM_023260	ENSMUSG00000038880	Mrps34	0610007F04Rik|5330430D13Rik|AV001970|Tce2	mitochondrial ribosomal protein S34	protein-coding	4.46321682550027	4.95838610941842	5.30719098035421	4.93496080145956	4.64517289282209	4.98514359109546	4.70986605282589	5.01691975824587	-0.211073373355773	0.56611871899533	0.807783748011785
Merged-chr3-98129033-3	chr3	98128935	98129135	+	893.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 22 of 33)	intron (NM_010928, intron 22 of 33)	-31599.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	3.96583477810457	3.85390756696592	4.06056584555102	4.54797972959026	3.70476656465807	3.68876580333476	3.90036782812991	4.01192150402848	-0.885328968558644	0.0674374306948855	0.277127699291684
Merged-chr5-8351477-4	chr5	8351374	8351574	+	953.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	16686.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	4.75748245809857	4.48058658716299	4.83185687081168	5.18600889609189	4.70196211541363	4.68606192243187	4.84369307669995	4.75512649790776	-0.233469533013737	0.524556921240527	0.783001721652081
Merged-chr15-76626996-4	chr15	76626897	76627097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305668)	promoter-TSS (NM_001305668)	-913.0	NM_001305668	66914.0	Mm.30028	NM_025842	ENSMUSG00000115987	Vps28	1110014J03Rik|CIIA|D730005C08Rik	vacuolar protein sorting 28	protein-coding	5.57115338444665	5.97835516223886	5.62810832790148	5.67282460422819	5.80389623683876	6.11535804371802	5.82359925491363	5.77858144044447	0.258191713904947	0.32591335242928	0.637470432594974
Merged-chr7-127588670-4	chr7	127588587	127588787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172281)	promoter-TSS (NM_172281)	-11.0	NM_172281	233900.0	Mm.41122	NM_172281	ENSMUSG00000030816	Rnf40	AI848422|BRE1-B|mKIAA0661	ring finger protein 40	protein-coding	8.09483430487751	7.9957270506719	7.53384318892512	7.64472652074566	7.99850754891158	7.89824011472975	7.9155104453189	7.76404508045728	0.0845667906431916	0.661110940333425	0.859233242450522
Merged-chr13-62856408-4	chr13	62856302	62856502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007994, intron 1 of 6)	intron (NM_007994, intron 1 of 6)	1968.0	NM_007994	14120.0	Mm.391871	NM_007994	ENSMUSG00000021456	Fbp2	Fbp-1|Fbp1|Rae-30	fructose bisphosphatase 2	protein-coding	5.80749622742993	5.48807997425311	5.56872559137289	5.65305979420128	5.9914480293045	6.03156156932586	6.07816245830686	6.26618440711862	0.736297524187501	0.00312926364305657	0.033017714294414
Merged-chr6-42351620-2	chr6	42351520	42351720	+	984.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011777, exon 5 of 10)	exon (NM_011777, exon 5 of 10)	1792.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	3.40824882537594	3.52256758467043	3.40868936196006	3.35086364000438	3.39278968297505	3.33417945465453	3.50594274263101	3.84495264481909	0.374207037663351	0.466161474442527	0.74629927630325
Merged-chr19-37704144-2	chr19	37704044	37704244	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6336.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	3.66725441628445	3.43108704510231	3.23582198975616	3.16206825891819	3.43528824065773	3.47255472802336	3.45580707547319	3.35631695517051	0.180888397922246	0.733417213058759	0.894469888645001
Merged-chr1-80716200-4	chr1	80716100	80716300	+	982.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	42353.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	5.10322126575807	4.84238855592266	5.25161478076515	5.2267358214432	5.08483707141737	5.07529263763506	4.49969400289378	4.74154490860562	-0.466970246787121	0.18230106486639	0.47878218634963
Merged-chr7-98339231-4	chr7	98339124	98339324	+	972.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18016.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	5.16579169103989	4.98553799859134	4.60038438576822	5.21273433668645	5.03492778320588	4.82775846294643	5.11045658610454	5.3857728399025	0.15270506374102	0.659032713090305	0.858075830194168
Merged-chr15-57838908-2	chr15	57838808	57839008	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199449, exon 4 of 4)	3' UTR (NM_199449, exon 4 of 4)	53510.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	3.43432823169375	3.20653614721743	3.53005326053669	3.12178783730534	3.21857619289663	2.99745892376288	3.26401662904816	2.96052914691331	-0.78348909220224	0.184428966930197	0.481848092685526
Merged-chr4-43520132-4	chr4	43520035	43520235	+	930.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277875, intron 2 of 8)	intron (NM_001277875, intron 2 of 8)	3419.0	NM_009416	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	5.08573604554465	4.85572207157217	4.7280342556332	5.22747278005992	4.90788086990202	5.1275682331536	4.78574404821131	4.84334551929019	-0.16883136434858	0.618021652911852	0.835822295464892
Merged-chr18-9507902-3	chr18	9507785	9507985	+	780.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57731.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	2.9658197450321	2.86265972047023	3.13089271710569	3.08397063453571	2.74475691821544	2.57877250903014	2.62822373791581	3.12898919978708	-1.02239333705067	0.138791718760236	0.414381792154761
Merged-chr13-112801516-3	chr13	112801420	112801620	+	868.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008903, intron 1 of 5)	intron (NM_008903, intron 1 of 5)	743.0	NM_008247	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	3.69178223785108	3.56366300954217	3.90468393990735	3.88989955380626	3.92432681024308	4.02666364963235	3.7874315547734	4.20522952219432	0.600653397969589	0.188770139012243	0.487605956044145
Merged-chr8-66495886-4	chr8	66495782	66495982	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9352.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	4.74984785682964	4.50732855612519	4.18997421403363	4.55971252608458	4.57841600533724	4.69469337384833	4.69267295986901	4.59960887318524	0.262620017780219	0.47154911911499	0.74994178991612
Merged-chr1-179561247-4	chr1	179561165	179561365	+	688.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146105, intron 1 of 10)	intron (NM_146105, intron 1 of 10)	14736.0	NM_146105	226744.0	Mm.87662	NM_146105	ENSMUSG00000038949	Cnst	9630058J23Rik	consortin, connexin sorting protein	protein-coding	3.91197626275448	4.07957789044921	3.86045120039201	4.05711785174354	3.56550821982362	3.81089275341919	3.99333515601214	4.40933018119931	-0.0139117286868182	0.977029027773336	0.991832478270637
Merged-chr3-106722186-4	chr3	106722085	106722285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028081, intron 1 of 2)	CpG	503.0	NM_001286685	321000.0	Mm.259638	NM_028081	ENSMUSG00000056260	Lrif1	2010012G17Rik|4933421E11Rik|AI450568	ligand dependent nuclear receptor interacting factor 1	protein-coding	7.23351283870817	7.60218046851509	7.2459748578397	7.08839422405213	7.48253022602656	7.66571205144375	7.52298536587288	7.48358031935684	0.317387960754251	0.103473477425094	0.353457473970529
Merged-chr2-158166772-4	chr2	158166677	158166877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20385.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	7.55473058835294	7.55116559733403	7.82152203890653	7.679318849835	7.46517372941901	7.4647330924116	7.58836473657317	7.44815086395039	-0.217334640872846	0.208621769597336	0.513007192521551
Merged-chr11-106098470-3	chr11	106098339	106098539	+	769.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 2 of 15)	intron (NM_011947, intron 2 of 15)	13537.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	3.39831310713276	3.50002629925799	3.15235395608775	3.20968446823727	3.16280325784952	3.57016762729053	3.43969081174864	3.6036901003484	0.453226560035997	0.40106062242966	0.698827271577009
Merged-chr11-109471496-3	chr11	109471420	109471620	+	880.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029842, intron 1 of 5)	intron (NM_001029842, intron 1 of 5)	1709.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	2.98769922187365	2.77658761465664	2.93090171895508	2.90216721424176	2.67388450857168	2.84834441215882	2.66557103257317	2.98643629372606	-0.478059755638437	0.44943125934806	0.734617277148016
Merged-chr3-9556546-3	chr3	9556437	9556637	+	971.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 2 of 8)	intron (NM_133218, intron 2 of 8)	53548.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	4.19987297367862	4.94927048394445	4.7853597734643	4.78876400645284	4.05548599621085	3.99271101869245	3.78855790275775	4.14775054386625	-1.73802318590821	8.34557658530469e-05	0.0017450934070664
Merged-chr12-32280317-4	chr12	32280200	32280400	+	848.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGA)n|Simple_repeat|Simple_repeat	-71651.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	4.06308899795215	3.94238010243331	3.91427084783362	4.05409848796022	3.97508229796674	4.40663828024198	4.1783368713806	3.8022489399424	0.278619039242862	0.522462791923806	0.781971587334536
Merged-chr13-37489466-3	chr13	37489386	37489586	+	967.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	144141.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.65711581410971	3.58767622012816	3.58077658144134	3.17320497641225	5.59866057165017	4.55397798439772	5.4768367919177	4.76347919087463	4.2394193830554	4.30835404189429e-18	1.10709145251983e-15
Merged-chr16-25042150-4	chr16	25042060	25042260	+	896.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17479.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	4.45614227589324	4.33852488826503	4.71431599622703	4.30829005435517	4.4437754958365	4.62803753504488	4.21641867911224	4.02282283964155	-0.247646465275752	0.544024355282782	0.795027379566929
Merged-chr11-114912584-2	chr11	114912484	114912684	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21802.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	2.57572813263694	2.64035175389255	2.63824164879347	2.08395041647174	2.42957476452391	2.61832459136852	2.5019389606816	2.36897215257993	-0.128035228608479	0.870651052795886	0.951430072143722
Merged-chr9-107597689-4	chr9	107597593	107597793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_111986)	TTS (NR_111986)	7709.0	NM_009153	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	6.34298052356236	6.13771480544234	7.16829379668438	6.65092333167272	6.22812904962262	6.52022441195414	6.97080573459027	6.44812154717138	-0.0978080416636348	0.744239820799338	0.899239415948819
Merged-chr4-132063225-3	chr4	132063126	132063326	+	885.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	L2a|LINE|L2	8871.0	NM_183428	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	2.8037297680116	2.81271063333897	2.91942794009285	3.08121831891076	2.72403859557497	2.56150852318021	2.60196229290018	2.60791425274259	-1.43022324370601	0.037173789993186	0.192330809271323
Merged-chr2-12206492-4	chr2	12206298	12206498	+	826.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001309, intron 13 of 29)	RLTR9C|LTR|ERVK	-94848.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	3.32542475400857	3.26088744788571	3.63725170811247	3.05065198488636	3.4059691100469	3.44043972941408	3.42425500413407	3.32410663960288	0.26890614495298	0.62210366251759	0.838189566229524
Merged-chr8-111877940-2	chr8	111877840	111878040	+	746.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-1265.0	NM_025781	66817.0	Mm.345350	NM_025781	ENSMUSG00000031953	Tmem170	9030409E16Rik|AA403674|D8Bwg1414e|Tmem170a	transmembrane protein 170	protein-coding	2.86229476133523	2.7558215494381	2.74557945147835	2.59066488488151	2.66764666451829	2.49844265184658	2.79465183533626	2.6156054786305	-0.427676861780269	0.521024198095555	0.78111362380667
Merged-chr9-45984827-4	chr9	45984748	45984948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357246)	promoter-TSS (NM_001357246)	23.0	NM_001357246	18475.0	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	2610005M20Rik|AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	5.30841520908352	5.11760977525169	4.82103046538528	5.18362568782255	5.38183592303184	5.3614491295922	5.28287879474056	5.21564527967124	0.347826141614505	0.246991800177602	0.558168726560377
Merged-chr14-31323953-4	chr14	31323841	31324041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033668)	promoter-TSS (NM_001033668)	-45.0	NM_001033668	110084.0	Mm.101811	NM_001033668	ENSMUSG00000019027	Dnah1	B230373P09Rik|Dnahc1|E030034C22Rik|MDHC7	dynein, axonemal, heavy chain 1	protein-coding	6.17702657532072	5.93468245539455	5.75464617240148	5.74169255512191	5.77772353014494	5.90519177541619	5.72551264150463	5.77548069514955	-0.173578084482167	0.502076735929163	0.769457185302407
Merged-chr3-148867776-1	chr3	148867676	148867876	+	765.0	f0_balb.idr	intron (NM_001081298, intron 2 of 23)	intron (NM_001081298, intron 2 of 23)	86859.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	3.05606080770545	3.46912066620791	3.47480806653593	3.47921017702205	3.10233314186514	3.30147128114206	3.35521870862268	3.47277570149793	-0.271929806967171	0.62549157955157	0.83995595021038
Merged-chr5-31814241-4	chr5	31814157	31814357	+	889.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 4 of 11)	intron (NM_144541, intron 4 of 11)	116207.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	4.3380483025799	4.12040466083954	4.29466135781576	4.32211086540339	4.63009280341088	4.27832981866874	4.31932199446469	4.37852751250223	0.347327175596247	0.367146113752006	0.671542932821638
Merged-chr13-111490022-4	chr13	111489943	111490143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122963)	promoter-TSS (NM_001122963)	84.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	9.07790289071488	9.28901157247485	8.97282131884809	9.02383944940161	9.3086554496723	9.43488963888538	9.38407447567048	9.00015330646488	0.242058126387499	0.137704827628937	0.412772337480001
Merged-chr8-117245550-2	chr8	117245450	117245650	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-11469.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	3.13344816713182	3.15497119269512	3.49076034588793	3.09274274884848	3.31498772684433	3.60841231167945	3.42345513183005	3.63575204491207	0.982996616096033	0.0659924943775728	0.273584518693628
Merged-chr2-131210421-4	chr2	131210279	131210479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291032)	promoter-TSS (NM_001291032)	19.0	NR_110992	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	7.70547104960338	8.25085756151604	8.21022639792981	7.83264997871197	8.11131737698026	8.37030578298214	8.12999666121818	8.34273197812105	0.285843643055912	0.136216614570348	0.410674897583299
Merged-chr9-90113827-4	chr9	90113727	90113927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 1 of 12)	intron (NM_001039147, intron 1 of 12)	993.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	7.33660194658376	7.88050931686105	7.93369429595358	7.64685973723951	7.90553852360279	7.73783610947845	8.00053478228977	7.7276670501017	0.170298038317767	0.383789465124758	0.685544183546393
Merged-chr10-57794095-2	chr10	57793995	57794195	+	588.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020561)	promoter-TSS (NM_020561)	-449.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	2.92697851446402	2.76833815407128	2.86981556972251	2.79174290244504	2.53311843198974	2.91739720162295	2.6716620603477	2.67873229452694	-0.662175840820395	0.311173144987607	0.623234990348648
Merged-chr1-171248879-6	chr1	171248772	171248972	+	903.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1257.0	NM_172845	240913.0	Mm.491147	NM_172845	ENSMUSG00000006403	Adamts4	ADAM-TS4|ADAMTS-2|ADMP-1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	protein-coding	3.49378811556401	3.88056059100066	3.72742964542075	3.43073342805188	4.20756356269021	3.8476391225869	3.60220860313921	3.92286418404852	0.824482725330308	0.0942207738486438	0.335784391988169
Merged-chr13-58359160-4	chr13	58359055	58359255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4208.0	NM_175214	75050.0	Mm.385742	NM_175214	ENSMUSG00000060176	Kif27	4930517I18Rik	kinesin family member 27	protein-coding	8.03660949764746	8.08325399126206	8.07629672668144	8.16128331265038	7.96470025366257	7.66119416442199	7.91233285758662	7.54685233423861	-0.39192258379263	0.025050777588307	0.14865271346045
Merged-chr10-111583319-3	chr10	111583223	111583423	+	918.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10950.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	3.32964382798737	3.10697752460212	3.67246320834551	3.71934976754024	2.98624455205751	3.19509137131337	3.13917480322004	3.14827613353411	-1.41383826067534	0.0178696598029722	0.118607284139851
Merged-chr5-20934793-4	chr5	20934709	20934909	+	904.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	intron (NM_001080977, intron 1 of 7)	-16180.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	4.44701834233901	4.14340126468023	4.56125000145557	4.59178868585727	4.27088545267046	4.53717663951786	3.84181240166224	4.08148193534392	-0.5870183055332	0.174242029410728	0.468561334949669
Merged-chr5-88554296-4	chr5	88554204	88554404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023054)	promoter-TSS (NM_023054)	-158.0	NM_023054	65961.0	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl-1|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	8.41935691537937	8.66480694399929	8.6242375838457	8.53447212047275	8.63552665876331	8.56626287024498	8.47273921216392	8.48179004600684	-0.0265183172125502	0.860280500588025	0.947128143348069
Merged-chr9-119343272-3	chr9	119343146	119343346	+	868.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357516, intron 3 of 10)	intron (NM_001357516, intron 3 of 10)	1952.0	NM_001357516	113868.0	Mm.205266	NM_130864	ENSMUSG00000036138	Acaa1a	Acaa|Acaa1|D9Ertd25e|PTL	acetyl-Coenzyme A acyltransferase 1A	protein-coding	4.59398016863654	4.71107613731918	4.34485216822748	3.90622294606501	3.57634219771689	3.88012284574825	3.80039433236363	3.75315443370077	-1.82195753846536	0.000237071409918991	0.00417892666830705
Merged-chr13-44732727-4	chr13	44732638	44732838	+	919.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	1467.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	4.92858203482294	5.24962917023812	4.64124328519807	4.62909367895684	5.45135018100006	4.77796724176526	5.16943310722837	5.43596637268628	0.688650279723697	0.0564152757538854	0.248719907890109
Merged-chr2-160318452-4	chr2	160318353	160318553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033411, intron 1 of 2)	intron (NM_001033411, intron 1 of 2)	9041.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	5.81006805839451	5.77214356395455	5.40963456183316	5.75045922635054	5.67514989361105	5.83992195335538	5.63676083749218	5.66135093859484	0.00247951331412441	0.992478972843932	0.997232174860037
Merged-chr1-170867814-4	chr1	170867711	170867911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081304)	promoter-TSS (NM_001081304)	-40.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	5.71151089450253	5.74879102273095	5.78912949064608	5.39338821891937	6.32177443592895	6.26944732424363	5.80795051837671	5.94748244474999	0.734920054099248	0.00658953430134077	0.0581426133674395
Merged-chr10-117072531-4	chr10	117072412	117072612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177798, exon 10 of 10)	3' UTR (NM_177798, exon 10 of 10)	-8660.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	5.18244789598342	5.04136243291116	5.75597026774798	5.53214490880559	5.31509270120653	5.14055799934616	5.68216139008774	5.63737306149568	0.0865087452177002	0.79129273364078	0.919050824109746
Merged-chr3-35933611-4	chr3	35933483	35933683	+	859.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205361)	promoter-TSS (NM_001205361)	-617.0	NM_001205361	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	4.59365008684034	4.255607527671	4.04603174942967	3.97996808880231	4.38547029093455	4.32189930281282	4.08042564915007	4.32586213307667	0.141268444356473	0.737994376461861	0.896580162228794
Merged-chr19-32077597-4	chr19	32077496	32077696	+	908.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018830, intron 2 of 23)	L1_Mur3|LINE|L1	25544.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	3.79898902286204	4.5420056425267	4.3356656739973	3.86986018177333	4.31727107378885	4.29187169717996	3.89903114542486	3.96642397715487	-0.0880775327266745	0.852803119575632	0.944670203219477
Merged-chr14-40956677-4	chr14	40956585	40956785	+	988.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	-8476.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	5.78854594947489	5.19318804667416	5.98543012881813	6.05693980177048	5.07587477055547	5.36499236760696	5.23142654991944	5.22005474970637	-1.04123646738102	0.00129994607934506	0.01662991768183
Merged-chr4-126702680-4	chr4	126702583	126702783	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011970, intron 3 of 5)	intron (NM_011970, intron 3 of 5)	25040.0	NM_011970	26445.0	Mm.22233	NM_011970	ENSMUSG00000028837	Psmb2	AU045357|AW108089|C7-I|D4Wsu33e|HC7-I	proteasome (prosome, macropain) subunit, beta type 2	protein-coding	4.6564647985452	4.28062552802392	3.94273101818634	4.80824219718951	4.22359114581022	4.12601023342597	4.19267502130518	4.58386284600632	-0.428286372539416	0.342102903624566	0.651084026125481
Merged-chr1-192981955-2	chr1	192981828	192982028	+	962.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301370, intron 3 of 8)	intron (NM_001301370, intron 3 of 8)	53847.0	NM_001301370	329324.0	Mm.76710	NM_181546	ENSMUSG00000016200	Syt14	B230320I09Rik|sytXIV	synaptotagmin XIV	protein-coding	2.45256806548343	2.40031087325003	2.45276134681215	2.28533238149867	3.15644447922724	3.01218266417583	3.30733464066107	3.27593500544408	4.50913453198092	1.34169708561856e-07	5.60121154587937e-06
Merged-chr14-70055322-4	chr14	70055236	70055436	+	847.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-22109.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	4.17726652407912	3.83898260167241	3.58836525302596	3.33889823567572	3.89093232130147	3.82924249319594	3.51249045291843	4.35762524244459	0.451260384850507	0.408637094120799	0.704424201942901
Merged-chr9-32508327-1	chr9	32508227	32508427	+	834.0	f0_balb.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	33125.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	3.33454554534421	3.21543362121645	3.44178693254526	3.43584258538536	2.99437576289782	3.39093301433719	3.20713745790061	3.33317543540795	-0.482021985547824	0.382908073916256	0.684806264846199
Merged-chr7-127118011-4	chr7	127117890	127118090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133686, intron 1 of 3)	intron (NM_133686, intron 1 of 3)	4039.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	4.96350285407412	5.22638560593792	5.00358419923636	5.09580674993397	5.51324201065407	5.78164579957627	5.55708828575442	5.58162232680781	0.933329637578931	0.00103780112567311	0.0138518099717532
Merged-chr15-64278970-4	chr15	64278873	64279073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	33700.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	5.86190013033802	5.94538928415588	5.79104422248076	6.00821052901251	5.6416625706822	5.94196077187591	5.73697420954133	6.09177070950567	-0.0929252728512701	0.717839880810106	0.887191620352087
Merged-chr10-119027292-2	chr10	119027192	119027392	+	604.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NR_152787)	TTS (NR_152787)	23207.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	2.97867749607744	2.88120838879834	3.03910639782225	2.82176612907569	2.98749665494033	2.81331496048735	3.19020168217188	3.14957076033991	0.496782079730963	0.4022895266996	0.69987042232112
Merged-chr14-52014921-4	chr14	52014844	52015044	+	957.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253695)	promoter-TSS (NM_001253695)	-386.0	NM_001253695	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	4.58845377362335	4.35729226115732	4.50579656635475	4.97420129307186	4.64036706695343	4.72132163039886	4.52747700708574	4.6259156325178	-0.0455032086830801	0.904882386713532	0.964691960037782
Merged-chr4-122902348-4	chr4	122902232	122902432	+	826.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12B|LTR|ERVK	-16256.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	4.20058085732792	4.13953067228265	4.06253958077825	3.83112516955652	4.01696037919129	4.08458539306257	4.38209036923619	4.1985886212189	0.317258618225108	0.451537493729638	0.736125770508735
Merged-chr5-142459293-4	chr5	142459201	142459401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199068, exon 9 of 9)	3' UTR (NM_199068, exon 9 of 9)	-4630.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	6.86564208932645	6.87730980146777	6.625319133633	7.09624277216348	7.31846904290047	6.88345237286692	6.87239905709695	7.01675483629318	0.216226538391386	0.326190129780829	0.637731404610917
Merged-chr9-96554752-4	chr9	96554658	96554858	+	917.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053268, intron 17 of 23)	intron (NM_053268, intron 17 of 23)	-76083.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	4.27385044993708	4.25225773077965	4.13179560121083	4.39651577642858	4.61318182310658	3.77588817638079	4.4980294493104	4.47891302096828	0.27209919313878	0.535686378261712	0.789809240803911
Merged-chr14-118431730-3	chr14	118431590	118431790	+	946.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65812.0	NR_045624	73306.0	Mm.362328	NR_045624	ENSMUSG00000099911	1700044C05Rik	-	RIKEN cDNA 1700044C05 gene	ncRNA	3.87627163993546	4.06619867325468	4.36423346550667	4.24304278712511	3.65192365827023	3.52347344838026	3.39517810746284	3.53795756607281	-1.87019691764487	0.000216486467542798	0.00388241125553763
Merged-chr4-132009962-4	chr4	132009862	132010062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	39116.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	6.36824685534484	5.92949718771822	6.24334589725731	6.31288762755701	6.2723686176154	6.09943159627701	6.28456961398646	6.21981267942179	-0.00395271964944692	0.986560873786884	0.995074627111756
Merged-chr10-9901226-4	chr10	9901138	9901338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081344)	promoter-TSS (NM_001081344)	-198.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	5.88064605602451	5.73680474032786	5.18492577428658	6.04603903012486	5.87509112901142	5.32960701568295	5.64345121802706	5.50645608309179	-0.248656783488745	0.434139331267453	0.723505412653402
Merged-chr5-144256730-4	chr5	144256606	144256806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163709, intron 2 of 2)	intron (NM_001163709, intron 2 of 2)	1481.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	6.92889710225747	7.28999425379037	7.21673367884635	6.74410463693805	7.32572134857131	7.36078071895731	6.84038921296858	6.84206079159749	0.088631425000594	0.708215656441397	0.882710273980338
Merged-chr14-61817888-1	chr14	61817788	61817988	+	622.0	f0_balb.idr	Intergenic	Intergenic	-135515.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	3.57008153418171	3.33980245676365	3.34755044326323	3.5075250954698	3.26013393724485	3.46158078723303	3.50412565801724	3.75790383665171	0.184566395704891	0.722128901588367	0.889141811997836
Merged-chr1-9953116-4	chr1	9953013	9953213	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8995.0	NR_024067	73824.0	Mm.28311	NR_024067	ENSMUSG00000098234	Snhg6	1110008H02Rik	small nucleolar RNA host gene 6	ncRNA	5.25484777492717	5.48727701519409	5.18887516996458	5.9050613569344	5.58101497092442	5.06427675965578	5.54330526851285	5.34622247172032	-0.187444053154984	0.572640882045463	0.811257395918118
Merged-chr3-108911749-4	chr3	108911646	108911846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356292)	promoter-TSS (NM_001356292)	-17.0	NM_001356292	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	7.32572287300929	7.33995276144271	7.13433121407601	7.17730451214558	7.65763268759418	7.62422367211864	7.76399118118187	7.46088307788558	0.517744275060442	0.00365266093883427	0.0372856378840219
Merged-chr5-88565821-4	chr5	88565708	88565908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289774, intron 1 of 17)	CpG	768.0	NM_001289775	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	6.58173427071371	6.74363256529936	7.24340455163553	6.87023822565072	6.44583828209404	6.84101475051683	6.77697237441873	6.95136695709461	-0.172955944100562	0.466468803464155	0.746420287776482
Merged-chr4-49627188-4	chr4	49627088	49627288	+	902.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4872.0	NM_001163263	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	4.55580439453906	3.85022283211538	3.94849589754178	4.00257942062032	4.26683406887316	4.57942140024308	4.31012412028172	3.94628088413807	0.443586308596727	0.329195456118334	0.640453018367131
Merged-chr6-34619663-4	chr6	34619545	34619745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 1 of 13)	intron (NM_001347100, intron 1 of 13)	21141.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	5.95960058862589	5.74325600368348	6.11338396116564	6.14419646408613	6.43783752580156	6.20463378749872	6.04055162304783	6.40082789348979	0.428162839212138	0.0839048728206043	0.314992876714019
Merged-chr4-137861742-3	chr4	137861633	137861833	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199307)	promoter-TSS (NM_199307)	-504.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	4.89015195242736	4.72364936231023	5.01131850532777	4.69624178678109	4.43597315397554	4.20779418802518	4.12091042628657	4.56534161037661	-1.06905518077569	0.00537553599321435	0.0501080770640393
Merged-chr13-113424001-4	chr13	113423861	113424061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78883.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	5.49281139112963	5.97203270359661	5.99373400163824	6.07369629845357	5.84525901562866	5.54579263137472	5.85604084965696	5.78858694661351	-0.234616742848058	0.387778204553085	0.688635176216235
Merged-chr12-32890620-4	chr12	32890483	32890683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63206.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	6.63221399629297	6.71489840064675	6.95098477380351	7.06939126254472	6.3672275100623	6.4513518718447	6.55169043356765	6.93381617797278	-0.390095708275831	0.0977487164303461	0.342560156519749
Merged-chr4-45513564-3	chr4	45513468	45513668	+	908.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	17260.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	3.88078139146252	3.90051474894662	3.34093833859166	3.56645992503822	3.5009980470465	3.81045318631739	3.57055999055262	3.52584050490872	-0.265405039084046	0.603854783442919	0.828350269166784
Merged-chr4-117886283-3	chr4	117886200	117886400	+	638.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033617, exon 3 of 8)	exon (NM_033617, exon 3 of 8)	1029.0	NM_033617	114143.0	Mm.207052	NM_033617	ENSMUSG00000033379	Atp6v0b	2310024H13Rik|Atp6f|VMA16	ATPase, H+ transporting, lysosomal V0 subunit B	protein-coding	3.56794773807923	3.38742234863693	4.03584261887599	3.34508519268474	3.51606022700804	3.79691460650427	3.49743424425624	3.77416036743304	0.141274640032482	0.789647963627382	0.918556325336503
Merged-chr7-43563494-4	chr7	43563370	43563570	+	933.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008549, intron 1 of 4)	intron (NM_001008549, intron 1 of 4)	1100.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	4.82289919287701	4.72217548754648	4.48502312682883	4.82440841196867	4.69486355405442	4.42871194172436	4.37659767754503	4.29745621108591	-0.565251713800346	0.130155334396443	0.401575322497554
Merged-chr11-117769147-3	chr11	117769044	117769244	+	765.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_154387, exon 15 of 19)	non-coding (NR_154387, exon 15 of 19)	10504.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	3.42168094671677	3.34746324111294	3.30580493235421	3.41317626909159	3.35306747772176	3.35609217805168	3.29408174789407	3.80100653850838	0.309749630891062	0.555666536627601	0.80160086764792
Merged-chr12-69977678-4	chr12	69977588	69977788	+	963.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022028, intron 2 of 4)	MLT1F1|LTR|ERVL-MaLR	9314.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	4.2422665568825	4.55775694610557	4.5748428486708	4.56530969938364	4.73836044760159	4.70793887399838	4.97370165068732	4.96489263843323	0.740590137594925	0.0355797978121658	0.187299676047495
Merged-chr19-34922303-4	chr19	34922202	34922402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362434)	promoter-TSS (NM_001362434)	-56.0	NM_001362434	240641.0	Mm.278471	NM_183046	ENSMUSG00000024795	Kif20b	33cex|C330014J10Rik|MPP1|Mphosph1|magoo	kinesin family member 20B	protein-coding	7.74003418113496	7.62776864131492	7.4300359348042	7.82193921193121	7.78493680971457	7.63747470697193	7.70364394961918	7.65477354626698	0.0363445411582874	0.837211998356883	0.938189376728559
Merged-chr6-134016435-4	chr6	134016309	134016509	+	787.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-19291.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	3.77973819986263	3.70783871058947	3.31880362285346	3.0734942297289	3.76651617168718	4.16998164638055	3.55498401536779	3.56732492659134	0.881790388941998	0.115896988753654	0.376669182343104
Merged-chr6-86539616-4	chr6	86539506	86539706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037961, intron 3 of 4)	intron (NR_037961, intron 3 of 4)	12205.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	5.1533450447407	5.39057147850751	4.98780628085701	5.10211029199249	4.8769870285053	5.09044023355828	4.96388197437083	5.05357948550957	-0.334704374902039	0.284385111721637	0.596289999025483
Merged-chr16-76399873-4	chr16	76399752	76399952	+	963.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26025.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	4.51944727657032	5.26591655992457	4.78715661141177	4.7670180599047	5.39111381197629	5.00347348855875	5.22834044756171	4.8995156431418	0.556263219936995	0.117643140591112	0.379364884888089
Merged-chr4-94557244-1	chr4	94557144	94557344	+	641.0	f1_c57bl6.idr	promoter-TSS (NM_026368)	promoter-TSS (NM_026368)	-448.0	NM_026368	67770.0	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	3.19375098827905	3.21644005618585	2.95083728859873	3.0839936478791	3.04738508759868	3.12471371748326	3.06734294839596	3.19243533151821	-0.0305533790783338	0.956600716893125	0.984712025507047
Merged-chr6-128424703-4	chr6	128424603	128424803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133927, intron 1 of 11)	CpG	207.0	NM_133927	101142.0	Mm.31345	NM_133927	ENSMUSG00000001518	Itfg2	2700050P07Rik|AI646725	integrin alpha FG-GAP repeat containing 2	protein-coding	7.87784125178574	8.04127692692519	7.98607333092844	8.05484756210601	7.95418545555973	8.0033327635992	8.02707046288532	8.00776955775575	0.000674589497156741	0.996544767910116	0.998649284589029
Merged-chr4-150556540-4	chr4	150556444	150556644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	95630.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	6.02630690322814	5.7213752039356	5.93624075972643	6.39277192149786	6.21834270180916	6.04123614130486	6.27040841357492	6.41599272409178	0.275544505922447	0.302234953280009	0.614580669052615
Merged-chr2-170154374-4	chr2	170154246	170154446	+	728.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11671.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	3.67762080803216	3.16013777370765	3.32168555618398	3.37245007021822	4.00595829971153	3.85059838645337	3.97958318225253	3.56758004195169	1.46430211832137	0.00416603975394817	0.0413923148584976
Merged-chr9-119220405-3	chr9	119220318	119220518	+	729.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_033303)	TTS (NR_033303)	11274.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	3.99762808900411	3.58702079181694	3.46098850626576	3.94802977538262	3.39709825169582	3.37936328614844	3.50707065919898	3.73129599556633	-0.840369271665146	0.108223979810856	0.363105098230352
Merged-chr2-167496555-4	chr2	167496456	167496656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030743, intron 1 of 7)	L3|LINE|CR1	-3682.0	NM_001356523	263876.0	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	7.81461119668318	8.41137590502745	7.36989489961526	7.46111022893923	7.95325464104689	7.90010957683344	7.53954807667061	7.37543994297949	-0.152101484176939	0.565585653165666	0.807629114072388
Merged-chr6-29246763-4	chr6	29246651	29246851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25737.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	6.30956807006047	6.25815837775926	6.6448490954808	6.78507810828902	6.51347885080771	6.48750647717615	6.52011045356598	6.18590874046961	-0.140812299372951	0.561099865947102	0.804849597634179
Merged-chr9-96167395-4	chr9	96167276	96167476	+	823.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177352, intron 11 of 16)	intron (NM_177352, intron 11 of 16)	-28899.0	NM_001184706	211586.0	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	3.56830329693544	3.81070670334495	3.81056811841086	3.83708307751115	4.11917815070911	4.27585583517617	4.13084347604445	4.18907070959566	1.09745012876885	0.0108470997536107	0.0837221549948227
Merged-chr13-5874932-4	chr13	5874844	5875044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13455.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	6.00803182878677	6.49985769915978	5.96425141919598	6.06808467479872	6.21940654225964	6.32944421298552	5.8638777193667	5.68078746819324	-0.156995223775737	0.572337617796583	0.811241469719098
Merged-chr14-51942414-4	chr14	51942296	51942496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19623.0	NM_001011687	497071.0	Mm.378602	NM_001011687	ENSMUSG00000068392	Rnase13	-	ribonuclease, RNase A family, 13 (non-active)	protein-coding	6.28668988422517	6.44618256398437	6.23359936299571	6.30679203355831	5.74984882850366	5.8951996382365	5.9592069954862	5.81824070335383	-0.733976983862763	0.00170950727253666	0.0206804385672402
Merged-chr2-160729961-4	chr2	160729858	160730058	+	906.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1352.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	4.30402352595431	4.04297095389192	4.1279551233013	3.94162411959175	4.24365611883508	4.59041029298073	3.66948353347917	4.21670921376382	0.288186538799161	0.531545535154757	0.787439220087839
Merged-chr5-65697324-3	chr5	65697233	65697433	+	910.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081321, intron 1 of 31)	CpG-11111	523.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	3.43568889638632	3.44144638486	3.48917995491188	3.17998161325879	3.14522471838043	3.70771034899054	3.31059674441831	3.13188639081262	-0.159937038267791	0.775746910185702	0.912484406602565
Merged-chr16-21380894-4	chr16	21380807	21381007	+	755.412476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42211.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	3.8184068031775	3.89540828110125	3.86599114137294	3.18355550129605	3.69908719246345	3.54873264056034	3.84855670015365	3.55235643192886	-0.143070869911201	0.79039566722706	0.918829338045187
Merged-chr7-88278016-4	chr7	88277897	88278097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311790)	promoter-TSS (NM_001311790)	-88.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	8.22803042663395	8.40800903580377	8.46236918016784	8.3970321705505	8.63413121570787	8.66529484889699	8.81440138569998	8.42096318118284	0.331863089745005	0.0385475561550433	0.196975096032638
Merged-chr2-164857537-5	chr2	164857459	164857659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011125, intron 1 of 15)	CpG-8831	149.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	4.90133232451284	4.9516186204254	5.6170060265802	5.2459271287559	5.187019369525	5.36176592459227	5.12991024472227	5.27644227655372	0.0517861464326727	0.87368663700044	0.952695341856951
Merged-chr18-84311949-4	chr18	84311873	84312073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	223815.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	5.88532346862407	6.07405615118039	6.32507517900134	6.57248166282307	6.14915837288249	5.96198673906831	6.45681841528568	6.08887076746786	-0.120813748998511	0.654784504143811	0.855720388544032
Merged-chr1-123929301-2	chr1	123929201	123929401	+	892.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199021, intron 1 of 25)	RMER13A2|LTR|ERVK	116258.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	3.0837126090776	3.09604944171616	3.14650256291137	3.11114324958803	3.23609770125197	3.25755696949159	3.19411930581017	3.46616690630941	0.687536837260287	0.200513594342529	0.502543620512921
Merged-chr9-75408016-4	chr9	75407899	75408099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015806, intron 1 of 5)	intron (NM_015806, intron 1 of 5)	1360.0	NM_027418	50772.0	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	6.81103970968285	7.22005889470664	6.67571122060125	6.5963665658178	7.19618111904332	7.03171293732577	7.24910907917845	6.82168414859255	0.339051336724763	0.140904928483987	0.417494563733161
Merged-chr10-127628746-3	chr10	127628649	127628849	+	845.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7601.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	3.83340955731362	3.63560237375051	4.67946475848261	4.2539370291829	3.68651532398309	3.52709717227481	3.53041961380374	3.60455589749981	-1.6446568806832	0.00251396744231604	0.0278899140549584
Merged-chr1-118759751-2	chr1	118759617	118759817	+	604.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131772.0	NM_023755	81879.0	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	2.98386404066594	3.12365062238599	2.98422605217431	3.0540278303945	2.85771057522934	2.89432146961774	2.97375825135688	3.04160888720369	-0.427507478722273	0.465970215432417	0.74626088086293
Merged-chr10-94122751-4	chr10	94122651	94122851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 9 of 20)	intron (NM_053072, intron 9 of 20)	-25180.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	6.21014120891205	6.08588903265068	6.47045816956536	6.89344083052165	6.77223004052125	6.34568794387769	6.43740956636955	6.44892168798102	0.0668775113546812	0.806563133326763	0.925439675100154
Merged-chr10-40024872-1	chr10	40024772	40024972	+	577.0	f0_balb.idr	intron (NM_144821, intron 1 of 3)	CpG	396.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	3.21545216343086	3.15606274129343	3.37775583730018	3.303860387272	3.27356089744775	3.06994344935155	3.20399912445429	3.09395387993812	-0.376032669113858	0.494883746156755	0.765380871135718
Merged-chr12-80807551-4	chr12	80807464	80807664	+	943.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	17032.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	5.39620711815678	5.77767936518357	5.06152368048126	5.4977003152957	5.51138060836208	5.6008315305762	5.56039226002758	5.26952139433927	0.0439552814017866	0.884389169364596	0.956563630962721
Merged-chr9-55153074-4	chr9	55152968	55153168	+	917.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346658, intron 1 of 12)	intron (NM_001346658, intron 1 of 12)	2985.0	NM_001346658	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	4.36699921696334	4.63929840219975	4.49225120409149	4.23972110934744	4.08460884962397	4.5405141567491	4.21158528544163	4.48931304561725	-0.234625187039995	0.558984242558724	0.803520798939503
Merged-chr2-30416128-4	chr2	30416035	30416235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007760)	promoter-TSS (NM_007760)	85.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	5.88383087254846	6.15230824151521	5.33966567068411	5.57995471600985	5.78067147552156	5.81734914950055	5.69029846787344	5.8583245097972	0.0255047219724655	0.930018632741082	0.974727857709636
Merged-chr4-130921408-6	chr4	130921305	130921505	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	8071.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	4.60294660825219	4.20418806675597	4.79335163104569	5.38505372496103	4.37217591638773	4.46337795288613	4.54108802730817	4.79009149403584	-0.609355446883475	0.16915836163281	0.461676496267707
Merged-chr6-39430914-4	chr6	39430816	39431016	+	918.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	10538.0	NR_152168	621427.0	Mm.389742	NR_152168	ENSMUSG00000068601	Gm10244	Anmkrn1	predicted gene 10244	ncRNA	5.57121346776734	5.24054199536554	5.42431778355216	4.75214226644185	5.05343841100951	5.16875480678926	5.31622554916261	4.74656157789756	-0.337636588956273	0.349091017143705	0.656765556493198
Merged-chr7-143465117-4	chr7	143465018	143465218	+	960.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4068.0	NM_001161624	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	4.72090325122055	4.30208012684085	4.61185516319358	4.58456606262949	4.42751138651603	4.17207673160068	4.42874471758479	4.91251166357434	-0.106995191130836	0.78833080766015	0.918087641460787
Merged-chr17-78247219-4	chr17	78247108	78247308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	46960.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	5.58604438526404	5.95584691477013	5.67180087426869	6.52054412807179	6.01640955291293	5.64524783362564	5.9965297692279	5.84605175637496	-0.19878243100456	0.528184989118219	0.784845712923171
Merged-chr4-130549311-4	chr4	130549219	130549419	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025998, intron 1 of 6)	(A)n|Simple_repeat|Simple_repeat	24717.0	NM_025998	67149.0	Mm.423029	NM_025998	ENSMUSG00000078532	Nkain1	2610200G18Rik|2810426C15Rik	Na+/K+ transporting ATPase interacting 1	protein-coding	4.36616742535111	4.77747682891505	4.21899607785164	4.29064668673151	4.67139778547588	4.82863744261608	4.39295840193438	4.72698915099492	0.517851104532356	0.178607118013336	0.474403912720026
Merged-chr6-119481096-3	chr6	119480998	119481198	+	860.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133940, exon 1 of 1)	3' UTR (NM_133940, exon 1 of 1)	1430.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	3.55157780384744	3.44775639026864	3.02839325523862	3.0267329829258	3.34136811054526	3.34040087469462	3.21545601372929	3.50123647757325	0.266528424125132	0.640732817457057	0.848323528464423
Merged-chr11-106674820-4	chr11	106674713	106674913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	40468.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	6.7942859688657	6.57853241289532	6.16767973749289	5.63506363993108	6.54803864047573	6.53713597276385	6.21641267638075	6.24404160911831	0.0609114920025064	0.842619734296548	0.940251336238462
Merged-chr17-46674317-4	chr17	46674214	46674414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144857)	promoter-TSS (NM_144857)	-59.0	NM_144857	224823.0	Mm.45101	NM_144857	ENSMUSG00000023971	Rrp36	-	ribosomal RNA processing 36 homolog (S. cerevisiae)	protein-coding	6.91623994757544	7.13630746082752	6.63881752741674	7.04512084113052	7.06352674547186	6.97006546900042	6.8824311890141	6.8169616538711	-0.0217161978909294	0.916868905085343	0.969282812937318
Merged-chr16-34667116-3	chr16	34667062	34667262	+	797.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030744, intron 2 of 5)	intron (NM_030744, intron 2 of 5)	15951.0	NM_030744	76378.0	Mm.23515	NM_030744	ENSMUSG00000022832	Ropn1	1700008N21Rik|ODF6|RHPNAP1|Rppn|ropporin	ropporin, rhophilin associated protein 1	protein-coding	3.3653547909439	3.24961134070567	3.42295663278358	3.19651824229613	3.55075644879205	3.29019342589037	3.46357957179418	3.76169600038733	0.778290366670864	0.131462509962906	0.403700467663439
Merged-chr3-135686708-4	chr3	135686607	135686807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	4840.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	6.12630441877632	5.79960185560838	5.84701283827351	5.92989043375814	6.00543216246855	6.24210925922899	5.88732931574159	5.81850644539901	0.10597452453423	0.672464085432951	0.865213136492391
Merged-chr16-21198774-3	chr16	21198668	21198868	+	793.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6027.0	NM_010143	13845.0	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	3.87208320420516	3.62944874212433	3.76194614993074	4.02466849402922	3.98804690634261	4.36676996840072	4.21974365601077	3.97235175600878	0.795203171313693	0.0789947592707976	0.304143905332072
Merged-chr6-73808397-3	chr6	73808287	73808487	+	823.483337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-337366.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	3.95913931604528	3.83464600493527	4.17466405849888	4.67684659463691	3.26405536395666	3.42879689232856	3.44099216139211	3.69973004852835	-2.34584731387521	2.86165459079233e-05	0.000697328696056169
Merged-chr2-120158314-4	chr2	120158202	120158402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-3727.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	6.02124939960483	5.88860351930484	6.27231112182429	6.25354152646115	6.06797080169002	5.77598061456556	5.68135558852969	6.03910122252916	-0.337587328704669	0.190223139855835	0.489334762262324
Merged-chr2-126475946-4	chr2	126475858	126476058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	15595.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	6.5068306041908	6.30367937697894	6.80565214868987	6.58112846081402	6.33665611489308	6.22305692059544	6.10530411964972	6.51938719683168	-0.376747709336093	0.109333140137264	0.365156887285581
Merged-chr7-143037523-4	chr7	143037421	143037621	+	976.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015529, intron 2 of 3)	ORR1D2|LTR|ERVL-MaLR	-15229.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	5.17178588269777	4.44197666973583	5.05012795079412	5.00773114132141	5.03437041156832	5.05246884124788	5.08752969853477	4.63266689913059	0.0413365203326542	0.908813220898716	0.966100563913989
Merged-chr11-4218564-2	chr11	4218464	4218664	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028022, intron 1 of 8)	CpG	313.0	NM_028022	71962.0	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik|Castor1	GATS protein-like 3	protein-coding	2.95160158432067	3.13868765135016	3.06983525861861	2.76729832007264	2.86017151339992	2.93025695584521	2.74499153789987	3.12310777981387	-0.271266809308929	0.663737156025364	0.860721584082956
Merged-chr2-43806585-3	chr2	43806475	43806675	+	875.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 2 of 14)	intron (NM_001301831, intron 2 of 14)	57751.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	3.93728615820569	3.6056985567861	3.74873615055806	3.49625701163877	3.87442980447816	3.51559314475522	3.8300884965434	3.7465618953094	0.178910276309088	0.711075340454355	0.884240356833917
Merged-chr2-167293012-4	chr2	167292907	167293107	+	943.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-52470.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	5.0111202035438	4.98158835275334	4.94435361494642	5.39431855168905	4.78916576442515	4.52180347007571	4.849755967853	4.90585757036367	-0.674528721983756	0.0504300426103532	0.232982410784859
Merged-chr12-3301595-4	chr12	3301491	3301691	+	818.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	intron (NM_016676, intron 1 of 5)	8378.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	3.96053129025308	4.41748025903145	3.84697141438589	4.21656320157753	4.48660694593389	4.50766868865382	4.19100865971791	3.95887983281877	0.420865093316871	0.344279111876532	0.65279956589839
Merged-chr4-126257290-4	chr4	126257153	126257353	+	765.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144941)	promoter-TSS (NM_144941)	-934.0	NM_001145970	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	4.0965195793663	3.75857991523198	3.80234763564325	3.73776969820104	4.13158277321309	3.80687569060113	4.12132034876593	4.17927905394899	0.614048826691144	0.160882209056519	0.449287302198445
Merged-chr3-105892617-4	chr3	105892494	105892694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-11827.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	5.46724811729202	5.13522129900556	5.44029121437338	5.41531927187427	5.36522160151459	5.5569607450647	5.5458244001232	5.49163550104952	0.201158600730675	0.471690938642721	0.750014008853512
Merged-chr2-153118400-4	chr2	153118316	153118516	+	751.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	L1MA4|LINE|L1	9948.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	4.22076196370977	4.29323278368052	4.03520691370321	4.18157795577533	4.30585289048688	3.99678432676232	4.11390848612229	4.03288219898322	-0.150081305755068	0.714329592479952	0.885778225100574
Merged-chr10-67181051-4	chr10	67180937	67181137	+	915.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 2 of 25)	intron (NM_207221, intron 2 of 25)	-4713.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	4.60793409398231	4.47299470065017	4.11984094260588	4.47773370552695	4.53484485612631	4.40008227507531	4.47210483941967	4.52964446727064	0.119044824360018	0.750792341780559	0.901855648088396
Merged-chr7-63903863-4	chr7	63903765	63903965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-12992.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	6.05247596632077	6.02886620296164	6.24415873979925	6.12015739745594	5.72496529020944	5.8222084239487	5.93790518147779	5.84890936365988	-0.449516103823259	0.060832731185141	0.260687114571171
Merged-chr4-128973948-4	chr4	128973896	128974096	+	721.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-11541.0	NM_001301841	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	2.62679716299981	2.6101592054944	2.62707536658337	2.54551512221396	2.52678463149329	2.86429692344708	2.80643799133594	3.02879332754978	1.0601703849074	0.107216556546051	0.36126651615857
Merged-chr8-111643463-4	chr8	111643362	111643562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011742)	promoter-TSS (NM_011742)	19.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	7.2702658276345	7.15465406005394	6.9675377878636	6.97055954395612	7.135609057572	7.27018321445479	7.22481227995021	7.2242397552446	0.166163857916114	0.376505094042926	0.679201563445813
Merged-chr9-15395527-4	chr9	15395416	15395616	+	926.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-37728.0	NM_176976	319675.0	Mm.218317	NM_176976	ENSMUSG00000046111	Cep295	5830418K08Rik|5832426L23Rik|Gm1131|Kiaa1731	centrosomal protein 295	protein-coding	4.66682699358544	4.74231783062874	4.31958151692309	4.43374900267764	4.56183750439646	4.80120203646729	4.78816357049723	4.62586108007023	0.319173132760281	0.374511751192099	0.677830694759353
Merged-chr11-9531052-4	chr11	9530955	9531155	+	886.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 45 of 61)	intron (NM_178259, intron 45 of 61)	339113.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	4.12079874906216	4.28073467453142	4.70453867080978	5.04305205405882	4.39887170134948	4.64177702833685	4.71716694873389	4.50705057897773	-0.0860746469273184	0.842168317839349	0.940110307562683
Merged-chr9-90275561-10	chr9	90275465	90275665	+	958.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-4796.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	4.45000131414543	4.13948938125429	4.53529261588236	4.31674577344716	4.47221556509362	4.5374450326331	4.73657235800636	5.00397455594997	0.751681872177185	0.0478232740769631	0.225595654153632
Merged-chr8-121116106-4	chr8	121116025	121116225	+	937.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013519)	promoter-TSS (NM_013519)	-46.0	NM_013519	14234.0	Mm.14092	NM_013519	ENSMUSG00000046714	Foxc2	Fkh14|Hfhbf3|MFH-1|Mfh1	forkhead box C2	protein-coding	4.55781104233264	4.67512818284291	4.63491627556951	4.28373125996804	4.41503569199126	4.32511896142834	4.68418243027814	4.38778702307069	-0.165886418343312	0.663386416381065	0.860501908583079
Merged-chr1-173934636-4	chr1	173934529	173934729	+	918.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302649, intron 5 of 9)	intron (NM_001302649, intron 5 of 9)	7863.0	NM_001302649	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	5.60569709806956	5.49374771640017	5.41631570265349	5.17852517450876	4.7142465509705	4.85015582339932	4.64558557355575	4.79496085305812	-1.30391931257187	6.79018707702671e-05	0.00146504615324548
Merged-chr9-107612866-4	chr9	107612755	107612955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3614.0	NM_001291539	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	8.15220447060732	8.4896954571853	7.9903636640929	8.03866959264735	8.02877133198972	8.03579342734118	8.2424264930026	8.08542611815459	-0.104978983405634	0.561608509349282	0.805000847536601
Merged-chr10-57721795-2	chr10	57721695	57721895	+	953.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	B1_Mm|SINE|Alu	-63128.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	2.8878324112962	2.81363539391492	3.31101122915085	3.09085896619351	3.26620602534523	3.31608875632615	3.13439201083009	3.1445815423494	0.684528604282891	0.245888937716373	0.557086363336334
Merged-chr9-65844659-4	chr9	65844549	65844749	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357872, intron 12 of 13)	intron (NM_001357872, intron 12 of 13)	-17085.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	5.22766459682016	4.95900846212964	5.56740236586991	5.6503134709049	4.78643418290449	4.81339540305126	5.01036671568033	4.80366539703492	-1.02514469229089	0.00259294715151907	0.0285128047733626
Merged-chr2-160225643-4	chr2	160225544	160225744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101850.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	7.04554530118672	7.23360312359068	7.41322100250291	7.63587276926392	7.13302334819891	7.29643343357712	6.99910438733105	6.86975246713686	-0.381331570934305	0.0783712546841642	0.303008557151772
Merged-chr2-6726320-4	chr2	6726216	6726416	+	738.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-4654.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	3.81576675897687	3.71510439175533	3.59515484285607	3.80566951752503	3.70485851032687	3.82946582065726	3.98697135958683	4.08709751183294	0.47139608454052	0.3003539413131	0.612422387893833
Merged-chr5-125333216-4	chr5	125333114	125333314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	7880.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	5.87529819819537	5.7245135291518	6.23793596821805	6.06833285921479	5.81086662990283	5.76876448784951	5.97811143775683	5.8247435201787	-0.233294414473384	0.363813887195926	0.668833841539305
Merged-chr6-88384838-3	chr6	88384743	88384943	+	667.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023060, intron 1 of 6)	intron (NM_023060, intron 1 of 6)	61696.0	NM_023060	65967.0	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|mSelB|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	2.95351982973424	2.85692578980989	3.07119555024287	2.99367265419402	2.78898705688308	3.12386906654478	2.74791189913423	3.06948285619158	-0.140850010107537	0.818214969131152	0.930242996594411
Merged-chr3-144607242-3	chr3	144607132	144607332	+	893.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER102b|DNA|hAT-Charlie	36805.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	4.59484880730232	4.42083471891547	5.00217870938057	4.8993869504272	3.61109087436919	4.06447389989009	4.33199891223567	3.93425246734921	-1.84902374520652	5.5615853061081e-05	0.00124057687403155
Merged-chr14-30557208-1	chr14	30557108	30557308	+	606.0	f1_c57bl6.idr	intron (NM_009388, intron 1 of 13)	intron (NM_009388, intron 1 of 13)	8077.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	2.36585619429688	2.10398380118716	2.29485251306838	2.33667996434349	2.31913690541429	2.5391064805626	2.5489378418625	2.61629338311927	1.28069040829495	0.0868190586786967	0.321340220357285
Merged-chr13-34572621-2	chr13	34572521	34572721	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80060.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	2.45651886179546	3.01955659140782	2.61428494943504	2.27535933196184	2.96839755860113	3.11571699981351	2.93189552898556	2.88280376316926	1.61892891740946	0.0330288966392045	0.17830957719513
Merged-chr7-19803128-3	chr7	19803041	19803241	+	946.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6332.0	NM_023224	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	4.12946585959451	4.09921632404835	4.08702678991147	3.84841880903685	4.27857899611356	3.79677556870028	3.54012080362896	3.73423698855325	-0.429294288188306	0.385586974959639	0.686973965429301
Merged-chr1-164315468-2	chr1	164315368	164315568	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178071, intron 3 of 9)	B3|SINE|B2	7796.0	NM_138314	171567.0	Mm.219428	NM_138314	ENSMUSG00000026575	Nme7	D530024H21Rik|Nm23-M7|Nm23-r7	NME/NM23 family member 7	protein-coding	2.74045429963684	2.52971986410334	2.60662936374987	2.29758056645044	2.62232122879383	2.85127051921331	3.01199297423833	2.80159215074878	1.41412004764262	0.0408689029189147	0.204368036889523
Merged-chr3-32421264-3	chr3	32421158	32421358	+	841.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14893.0	NM_008839	18706.0	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding	3.9219171046473	3.58706805489923	3.8251575763817	4.2993331479836	3.87238633368142	3.7224326669884	3.59235047380261	3.82295430513995	-0.545387009394859	0.274219253167844	0.58594281749517
Merged-chr6-52699221-4	chr6	52699109	52699309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14520.0	NM_025816	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	5.99669573921427	5.71442508991041	5.95371178844782	6.1620200627109	6.1110922807015	6.10654875633302	6.1093269173706	5.7821574719132	0.0917586636377651	0.718452714233587	0.887579709565285
Merged-chr17-88064714-4	chr17	88064623	88064823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001348248, exon 1 of 23)	5' UTR (NM_001348248, exon 1 of 23)	209.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	6.20483447351899	6.75175569708484	6.22567010193695	5.7841020003605	6.50635288538872	6.4956913833048	6.02745840241544	6.20148389462759	0.0676568898536957	0.816358766375205	0.929332831717909
Merged-chr9-107998051-4	chr9	107997955	107998155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4593.0	NM_013785	27399.0	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	5.50924720362325	5.76244969391368	5.61794839095388	5.54817926836013	5.44045145083871	5.7395637189609	5.66424541636662	5.38876547256789	-0.0872540099567928	0.74823448861332	0.900930235736524
Merged-chr15-96700261-4	chr15	96700137	96700337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175121)	promoter-TSS (NM_175121)	-509.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	5.19259635639505	5.28353423843186	5.19348266576671	5.10833368098692	4.87194370660668	5.42675583472465	4.89233240396404	5.28015835610472	-0.117924368363993	0.712525438830513	0.884925464309692
Merged-chr14-62252171-4	chr14	62252071	62252271	+	899.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40808.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	4.07306984420473	4.21840612236188	4.02438170174986	4.01494896236948	4.31642101757934	4.09573392267559	4.23451161542065	4.07125780664096	0.279152499813255	0.489213516121842	0.761620931360531
Merged-chr19-5777539-4	chr19	5777426	5777626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-6107.0	NR_155264	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	5.51045786918277	5.89870830910568	5.57037823539807	5.12545830151789	5.94966656959885	6.1998419161101	6.07248903724532	6.04159645084643	0.856729346745526	0.00279440374306776	0.0302283987884225
Merged-chr6-72154169-4	chr6	72154045	72154245	+	955.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011375, exon 7 of 7)	3' UTR (NM_011375, exon 7 of 7)	-30948.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	4.6182906871942	4.38472464092074	5.14312959378339	4.90262219784081	4.66160556823433	4.95537835284321	4.86692365258736	5.05079385633867	0.180931553906724	0.62513352672377	0.839735974131569
Merged-chr2-181213160-3	chr2	181213059	181213259	+	723.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011481)	promoter-TSS (NM_011481)	12.0	NM_011481	20811.0	Mm.4752	NM_011481	ENSMUSG00000027579	Srms	A230069J08Rik|srm	src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	protein-coding	3.13654774461378	3.02394677591432	3.1912885549139	3.00315884031124	3.05794544300633	2.85759259188616	3.12464424941824	2.89205549746938	-0.391846354607202	0.50608887036425	0.77186284286763
Merged-chr13-9750005-4	chr13	9749895	9750095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347474, intron 1 of 14)	intron (NM_001347474, intron 1 of 14)	13815.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	5.19383122917233	5.60502783366161	5.70955291540865	5.484568455125	5.41211202387665	5.90493412976841	5.33315120020435	5.44562812076269	0.0437223848536615	0.884030661693749	0.956390337098447
Merged-chr8-105553048-4	chr8	105552952	105553152	+	885.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	13012.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	4.83525517932972	4.52209654665267	4.95453988946942	4.12509205572162	4.20978984994865	3.98348634225079	4.57445902016392	4.20043831496784	-0.872904606878409	0.0525395540939507	0.238837202762378
Merged-chr12-79172163-4	chr12	79172087	79172287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016800, intron 1 of 5)	CpG	271.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	6.32923856903116	6.70556921302726	6.44978876464018	6.41807386010571	5.89950438559403	6.06352381692848	6.2799356898303	5.88007989207478	-0.68025791613367	0.00465417048294872	0.0450720001096336
Merged-chr7-43642807-4	chr7	43642707	43642907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028236, intron 4 of 5)	RLTR28|LTR|ERVL	8068.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	6.76799070533723	7.00336206028658	6.4936018117361	6.72461932972522	7.14190553622382	6.9746143603277	6.92287390521618	6.80728787749909	0.296282839578501	0.16334440034737	0.45295851946253
Merged-chr1-172455505-4	chr1	172455422	172455622	+	882.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19838.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	4.16298067845848	4.0454991266417	4.72828141251087	4.90858387515106	4.17593143410984	3.94402052557077	4.45601688041155	4.43379193959675	-0.594858716980352	0.202032844235355	0.504561096797597
Merged-chr2-170343884-7	chr2	170343815	170344015	+	961.5476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12446.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	3.71322732953319	3.53067325618606	3.8196576855906	3.94408579017173	3.9394900494657	4.13148349323265	3.58555196493131	3.91515977032282	0.385351618323236	0.420646921766365	0.713412929648266
Merged-chr17-12810641-4	chr17	12810511	12810711	+	834.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027784, intron 2 of 2)	intron (NR_027784, intron 2 of 2)	-40905.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	3.83139075566332	3.53980578651204	4.11588000343827	4.14853321265981	3.70608134719608	4.05618592410563	3.91699826351689	4.02558099518053	-0.0342923119592124	0.942942245158572	0.979391304073282
Merged-chr18-20648613-4	chr18	20648512	20648712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	MTE2a|LTR|ERVL-MaLR	-16638.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	7.98510903735578	7.83815748402526	7.8906003914903	7.71665649836894	7.90176681768854	7.63845811587221	7.74097996923312	7.65931366627931	-0.141633544732293	0.410873198766185	0.706273206869081
Merged-chr3-52088579-4	chr3	52088474	52088674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	16432.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	7.1403178541855	7.18078314704829	7.5686289902253	7.78746363074493	7.10499861896632	6.96771267821337	7.35118267515559	7.17154268654963	-0.409146272992783	0.0678570267541251	0.277967266071615
Merged-chr11-26587285-2	chr11	26587185	26587385	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	6635.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	2.77701976029104	2.87949534125778	2.89377817660229	2.70455249105192	2.7654788086252	2.60996431504846	2.50173306841241	2.7136566678268	-0.768103455972802	0.249959843353672	0.561063722054524
Merged-chr15-8636208-4	chr15	8636132	8636332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_148938, exon 10 of 10)	exon (NM_148938, exon 10 of 10)	74575.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	7.41422348652282	7.58857161705727	7.4926813761169	7.50911752649801	7.59010275342447	7.59261627128634	7.75297884250619	7.37004410917158	0.105910351137638	0.549457847569246	0.798017111469724
Merged-chr13-98812439-4	chr13	98812349	98812549	+	941.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 1 of 25)	L1MB7|LINE|L1	3000.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	4.48236948103556	4.49291097142008	4.43596598188027	4.88495076110504	4.66127555525202	5.04960562753634	4.92074244888676	4.97350262365047	0.601994579322751	0.103316101364324	0.353198058643257
Merged-chr3-97901180-4	chr3	97901092	97901292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011342)	promoter-TSS (NM_011342)	-35.0	NM_011342	20333.0	Mm.2551	NM_011342	ENSMUSG00000027879	Sec22b	4930564D15Rik|AA517334|AI480645|C81333|ERS-24|Sec22l1	SEC22 homolog B, vesicle trafficking protein	protein-coding	6.46244048430552	6.61045567399514	6.24913755360013	6.26260930766728	6.2332668653123	6.36596068464039	6.39738471339349	6.14339644050367	-0.169261434217626	0.460899428027879	0.742813687656015
Merged-chr16-31192021-4	chr16	31191915	31192115	+	974.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030138, intron 1 of 22)	intron (NM_030138, intron 1 of 22)	9223.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	5.71869913562441	5.67929070230834	5.59187926332189	5.88544426803742	5.80174541614179	5.21148592179199	5.42264717416503	5.85349568376455	-0.204649946914414	0.482157948890408	0.757084112248137
Merged-chr5-99257895-2	chr5	99257766	99257966	+	707.700012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4939.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.01247168469518	2.85220503920946	2.9555330386741	2.66495773204301	2.94089259664541	2.87309233842974	2.82308722678057	2.894038253844	0.0811289992595712	0.895376135616083	0.960823579379062
Merged-chr17-67348750-4	chr17	67348635	67348835	+	867.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	MER5A|DNA|hAT-Charlie	5724.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	3.47430530390869	3.64913551972326	3.4747686119733	3.36641957252487	3.67037744013363	3.41027192287938	3.40582443949044	3.41668792124046	-0.000528469128659233	0.999168861924456	0.999578096120658
Merged-chr3-8685401-4	chr3	8685364	8685564	+	991.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18426.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	4.84786697460622	5.16144865552398	4.95718941203211	5.38334473240689	4.87453124149378	4.86573928868533	4.86264068275414	4.64172108263455	-0.608688726854941	0.0734557630662913	0.291948615740441
Merged-chr7-116457177-4	chr7	116457087	116457287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_A_Mam|LINE|RTE-X	-13729.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	7.21810189392363	7.30097466748635	7.20837961062058	7.24140820950445	7.41224922540648	7.31745875153463	6.63181363035828	7.22516918291679	-0.0778176070844416	0.723238984893803	0.889535016141386
Merged-chr12-84175116-2	chr12	84175016	84175216	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	18899.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	4.46758595863771	4.53225874775426	3.9983206458256	4.29848468552305	4.3345549407812	4.33371725518758	4.32487134502603	4.46539681183389	0.0595174030435303	0.879653950779519	0.954930584470098
Merged-chr7-127745462-4	chr7	127745343	127745543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1332.0	NM_172748	233902.0	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	6.28693238587317	6.44408879961049	5.89744155102916	5.95116643251873	6.61135597458284	6.3268982774163	6.25580508576568	6.53621210507761	0.434513352849643	0.081974188946994	0.31082680561784
Merged-chr3-95357221-4	chr3	95357094	95357294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018877)	promoter-TSS (NM_018877)	8.0	NM_001163641	84505.0	Mm.490259	NM_018877	ENSMUSG00000015697	Setdb1	AU022152|ESET|KMT1E|mKIAA0067	SET domain, bifurcated 1	protein-coding	5.94095936346801	6.0196338158965	5.61647722193518	5.7611374105177	6.09897011245174	6.11662208937799	5.64373474251962	6.04350718734573	0.241514777521284	0.356803814126623	0.66317411451208
Merged-chr6-114854309-3	chr6	114854193	114854393	+	854.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	67528.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	3.35936520071188	3.38779982363514	3.57002770294435	3.47017549475736	3.40720258258063	3.21758427345	3.45571694348503	3.35806699224054	-0.296068879932989	0.564863953905306	0.807034351164709
Merged-chr5-121124460-4	chr5	121124376	121124576	+	890.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	66921.0	NM_001109992	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	4.55980365587534	4.24970517365246	4.35629599315505	3.75949238107901	4.40967674327555	4.73161865351488	4.14822685305994	4.69990757590451	0.616662070467347	0.164378237870954	0.454548662172245
Merged-chr2-170160341-4	chr2	170160240	170160440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17665.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	5.5394903436693	5.52111876391335	5.3270689770661	5.64080256731156	5.83587560829923	5.77041626916209	5.85265702106329	5.74319647175305	0.462061491543129	0.0761608935843172	0.298096281646671
Merged-chr9-32509907-3	chr9	32509791	32509991	+	992.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	31561.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	3.94856862365148	4.12042372686462	4.24364058156695	4.21561345828775	3.51044317385612	3.55069123898689	3.61495232290808	3.74201777464165	-1.61597324403807	0.000624109622085998	0.00921458178603179
Merged-chr19-6128166-4	chr19	6128025	6128225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026912)	promoter-TSS (NM_026912)	90.0	NM_026912	69024.0	Mm.329629	NM_026912	ENSMUSG00000024787	Snx15	1500032B08Rik|E130013C21Rik	sorting nexin 15	protein-coding	6.50085004439378	6.84074478585362	6.82654429836059	6.07491437500743	6.63881636631286	6.74379465245771	6.26946902301995	6.53055533689879	-0.0387817985278912	0.883607234223706	0.956305183749075
Merged-chr15-85634635-4	chr15	85634533	85634733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-52812.0	NM_009528	22422.0	Mm.306946	NM_009528	ENSMUSG00000022382	Wnt7b	Wnt-7b	wingless-type MMTV integration site family, member 7B	protein-coding	9.29509212405783	9.43676521736255	9.21780358441417	9.27690086481103	9.39526403050203	9.58690110563093	9.59501967708619	9.23386914679689	0.185670900424895	0.222130002026958	0.530127758362736
Merged-chr7-120206179-4	chr7	120206061	120206261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026458, intron 1 of 30)	intron (NM_026458, intron 1 of 30)	2197.0	NM_026458	67928.0	Mm.158178	NM_026458	ENSMUSG00000062017	Abca14	1700110B15Rik|4930539G24Rik	ATP-binding cassette, sub-family A (ABC1), member 14	protein-coding	6.20036918138421	6.18049084855085	6.29826993251099	6.69612334947904	6.10319875292167	6.473980432028	6.37259109391589	6.21698191010536	-0.13377570916243	0.594422614654887	0.823411261518897
Merged-chr1-84839692-6	chr1	84839638	84839838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025386)	promoter-TSS (NM_025386)	-103.0	NM_025386	66153.0	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	6.29257798859394	6.31054791491363	6.59545224049205	6.01150229334152	6.58745351854089	6.54331682227933	5.8668004349989	6.66302408578397	0.217567465165411	0.424321425776756	0.716115696324185
Merged-chr14-40967104-4	chr14	40966966	40967166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145928)	promoter-TSS (NM_145928)	-170.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	9.15620604413848	9.2628694813946	9.00531982051333	9.11014337376531	9.05459976343124	9.35453002009795	9.38294696011921	9.132698055507	0.122566187239715	0.426819123417791	0.718196581280994
Merged-chr2-18056114-2	chr2	18056014	18056214	+	852.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_149308, intron 1 of 9)	intron (NR_149308, intron 1 of 9)	386.0	NR_149308	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	2.79050037326522	2.76819652562109	2.79080506073926	2.4754778307383	3.32197300268785	2.96944853117753	2.97337197602686	3.2038446340182	1.96124636128561	0.00207472213962955	0.0240554890335057
Merged-chr17-24163780-4	chr17	24163679	24163879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172935)	promoter-TSS (NM_172935)	-46.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	7.68041966339414	7.83324791447631	7.53863897234103	7.33479509333881	8.00899852817601	8.18469468141362	7.69373555359457	8.11382634588357	0.533711841089296	0.00696058576430481	0.0606433765671008
Merged-chr2-127889619-4	chr2	127889496	127889696	+	841.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028765, intron 8 of 17)	intron (NM_028765, intron 8 of 17)	34968.0	NM_028765	74121.0	Mm.244835	NM_028765	ENSMUSG00000027380	Acoxl	1200014P05Rik|AV025673	acyl-Coenzyme A oxidase-like	protein-coding	4.22600961514715	4.27595919795436	4.22665600157711	4.15845033006464	3.9137897473772	4.39845971306958	4.33534932528463	4.26837344332049	0.0311500905929175	0.938963316133345	0.977881364615113
Merged-chr17-73095256-4	chr17	73095157	73095357	+	984.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12728.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	4.98338185044244	5.16143262716282	5.33343695795048	5.51934503189082	4.90502909122244	4.96713311454859	5.25042308117967	5.01685076956451	-0.460037359263699	0.154404046269957	0.439700964570886
Merged-chr10-94093599-3	chr10	94093497	94093697	+	958.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 5 of 20)	intron (NM_053072, intron 5 of 20)	-54334.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	3.47734846963696	3.42979412569589	3.62779491019657	2.98942684009649	4.92708676017243	4.92771917400221	4.69627124470042	4.87064275905972	4.28772840205052	5.88385892726664e-20	1.95704296534538e-17
Merged-chr12-55487498-10	chr12	55487432	55487632	+	995.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5115.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	5.33852723925708	4.97826621961014	5.65292464855577	5.27767274759903	5.61343150370725	5.42247814909133	5.05248027794584	5.3357287433612	0.0951692475290171	0.766544247407532	0.908660493187862
Merged-chr9-7871285-4	chr9	7871167	7871367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	1903.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	5.24107473760334	5.11932422883962	5.50616907626801	5.19828139663055	5.52126337942333	5.41806889879111	5.62696991877591	5.50228770562651	0.452947970777202	0.107483017126946	0.361594614367539
Merged-chr6-37426029-4	chr6	37425942	37426142	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	MT2B2|LTR|ERVL	16106.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	5.29332959040148	5.79616485333507	6.54214263903552	6.49091754694117	5.87507908608706	5.91549442531919	6.11430574091267	5.99773484732303	-0.24786972809222	0.462209294927028	0.74376780554653
Merged-chr18-57354812-4	chr18	57354760	57354960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028447, exon 1 of 9)	5' UTR (NM_028447, exon 1 of 9)	127.0	NM_028447	73137.0	Mm.29889	NM_028447	ENSMUSG00000024594	Prrc1	1190002C06Rik|2310058D16Rik|3110038B19Rik|9430085A19Rik	proline-rich coiled-coil 1	protein-coding	6.24416636904099	6.24412475301112	6.80333189812644	6.23991449855656	6.30818943029998	6.42177650399934	5.90725419281084	6.47192082911363	-0.155434851804165	0.553455220084532	0.800211032102314
Merged-chr4-43558832-4	chr4	43558755	43558955	+	903.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011602, intron 1 of 56)	intron (NM_011602, intron 1 of 56)	3728.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	4.00694096036404	4.3728515615175	4.31155821431146	4.14745691536202	3.83068627836306	4.13166494134191	3.53157008671671	3.90333753300888	-0.957368033413943	0.0377016148007244	0.19412349825671
Merged-chr7-73559325-4	chr7	73559215	73559415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037569)	promoter-TSS (NR_037569)	-920.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	5.31034559058161	5.01144501708313	4.56009545828567	5.38952970434552	5.08446529764736	5.36532054110036	5.28464577549476	5.21930388860827	0.213143740406732	0.539832414125362	0.792406302070178
Merged-chr7-132317396-4	chr7	132317292	132317492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360768)	promoter-TSS (NM_001360768)	-164.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	6.83341968853232	6.48617201114375	6.93918059309668	6.96182687109776	6.63643986392315	6.57791660197459	7.05663392957219	6.8433178555898	-0.046408247829089	0.838197174395902	0.938628395077732
Merged-chr11-51328726-4	chr11	51328629	51328829	+	935.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153393, intron 2 of 28)	intron (NM_153393, intron 2 of 28)	38809.0	NM_153393	237759.0	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	4.63380807882948	4.28371840002499	4.67319326172188	4.83596199806843	4.52559756821328	4.5048025863147	4.65120012108017	4.91140150108986	0.0471804070374875	0.900353454463629	0.963086977653908
Merged-chr11-114793124-4	chr11	114793024	114793224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028055, intron 2 of 2)	intron (NM_028055, intron 2 of 2)	2768.0	NM_028055	72014.0	Mm.38347	NM_028055	ENSMUSG00000000202	Btbd17	1500005I02Rik|Tango10a	BTB (POZ) domain containing 17	protein-coding	6.01964468894195	5.80974975031714	5.79902767936722	6.11760139553244	5.6902244777042	5.92533134139289	5.3780638111592	5.95395967841124	-0.325588241647851	0.233247172801333	0.542869961976968
Merged-chr1-180429088-3	chr1	180428996	180429196	+	931.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54408.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	3.8187741689193	3.90377334298213	3.97608887211976	3.5420092780375	4.21130628019424	4.19621087722308	4.18171380894652	4.02196315149491	0.968292232474485	0.0259482828150559	0.152302533395965
Merged-chr6-113659851-4	chr6	113659731	113659931	+	963.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	21364.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	5.10596227389279	5.5976234359475	5.66980446662225	5.57691594891641	5.15516687765868	5.09747884531218	5.33603089349155	5.03063746656759	-0.632931614596594	0.0381858799836034	0.195809577937678
Merged-chr1-174036256-4	chr1	174036132	174036332	+	876.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4477.0	NM_172648	226695.0	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	3.59274635067109	3.93755756795758	3.47844068281906	3.67742341449915	3.68025048645088	3.65269576035259	3.63247051156086	3.53525975498815	-0.180252407127227	0.71000614842793	0.88395591616441
Merged-chr18-53743865-4	chr18	53743775	53743975	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178686, intron 2 of 20)	intron (NM_178686, intron 2 of 20)	672.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	3.40836382745186	3.44691698837085	3.91435076390126	3.26857093016042	3.44711325684378	3.70132589022365	3.39639451327559	3.86940687001048	0.286497100993439	0.594904021946093	0.823648310326784
Merged-chr9-119894839-4	chr9	119894766	119894966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026236)	promoter-TSS (NM_026236)	-29.0	NM_026236	67561.0	Mm.104789	NM_026236	ENSMUSG00000032512	Wdr48	8430408H12Rik|Uaf1|mKIAA1449	WD repeat domain 48	protein-coding	6.92402609908784	7.34379007868734	6.76172637870138	7.23296259151157	7.56832904980581	7.31976319264025	7.51236070881627	7.29178520749512	0.451260885788987	0.032420616289036	0.176274610205639
Merged-chr8-3664623-4	chr8	3664523	3664723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1139.0	NM_026985	69189.0	Mm.175176	NM_026985	ENSMUSG00000013974	Mcemp1	1810033B17Rik	mast cell expressed membrane protein 1	protein-coding	7.66830581252777	7.60022892741022	7.61911762763308	7.59432189751083	7.45338411795107	7.65093300906354	7.68836873354848	7.63094734372572	-0.0203058294503245	0.903860315112676	0.964396776684582
Merged-chr19-40401344-4	chr19	40401145	40401345	+	976.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034962, intron 2 of 22)	intron (NM_001034962, intron 2 of 22)	1065.0	NM_001034964	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	4.33834833055211	4.46019097885014	4.77113308168187	4.49461222284665	4.16563907508673	4.76360178677645	4.27293348924192	4.62736812913317	-0.118577308584228	0.766111946214885	0.908503528989431
Merged-chr2-157049128-4	chr2	157049023	157049223	+	978.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 3 of 14)	intron (NM_001164663, intron 3 of 14)	30142.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	5.01772088463255	5.30326942849223	4.6373448183416	4.86500378202368	4.97153478080775	4.97910855006164	5.08844204566797	4.63442595944356	-0.0922740416498901	0.79250516130365	0.919627897475503
Merged-chr12-33146149-4	chr12	33146090	33146290	+	809.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015602, intron 1 of 5)	intron (NR_015602, intron 1 of 5)	1396.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	3.74883991533168	3.51158710523276	3.69716947420423	3.55694538979082	3.69961031220561	4.01623156570226	3.78332386712116	3.74719751936452	0.565633183492653	0.220318837318427	0.52815976360831
Merged-chr6-134538940-3	chr6	134538836	134539036	+	870.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	27977.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	3.38495199331035	3.43564972819393	3.50638041303702	3.53771594351105	4.00875524892274	3.56248969425175	3.60266087002235	3.81131373099028	0.916717809769676	0.0618165956278902	0.26308750669164
Merged-chr11-69935667-6	chr11	69935627	69935827	+	944.922241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347634)	promoter-TSS (NM_001347634)	-172.0	NM_016875	53422.0	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	4.23228045757661	4.14456149627827	4.08532167681025	4.36650873953564	4.37813693317191	4.35953861957658	4.38637074477157	4.51982814873166	0.443402270963619	0.250786958736193	0.562051792691544
Merged-chr2-158076915-4	chr2	158076827	158077027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291136, exon 6 of 6)	3' UTR (NM_001291136, exon 6 of 6)	14870.0	NR_040609	72340.0	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	6.0881618691213	6.15324679458319	6.1925986110196	6.39501469160603	6.01658442694085	6.10701020181301	6.60475474633938	6.33759709305983	0.0869330362258368	0.729497394754933	0.892655797095728
Merged-chr6-30048019-4	chr6	30047879	30048079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010938)	promoter-TSS (NM_010938)	-9.0	NM_001164228	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	6.5450690914257	6.37995713335855	6.13420486565206	6.52187426721838	6.36444254462255	6.78381927732787	6.58982899446367	6.58855018097081	0.245404793989487	0.283646000066531	0.595722718088449
Merged-chr7-90134228-7	chr7	90134128	90134328	+	859.654785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	B1_Mus2|SINE|Alu	4015.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	3.78156444806306	3.76580206191397	4.14243823658672	3.38886523406375	3.40629425009317	3.95610649489189	3.81648317018989	3.87976509885045	-0.0358665024661468	0.945330437920369	0.980464778437826
Merged-chr7-81212407-4	chr7	81212287	81212487	+	969.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1417.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	5.22712072203993	4.72681027397335	4.91259885217197	4.69929782117722	5.10786415993886	4.85576494444731	4.69790318389314	5.22435065612137	0.193254275836638	0.582088108922765	0.816501953640427
Merged-chr9-107872843-4	chr9	107872750	107872950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011251)	promoter-TSS (NM_011251)	-31.0	NM_029169	19654.0	Mm.139926	NM_011251	ENSMUSG00000032582	Rbm6	4930506F14Rik|Def-3|NY-LU-12|g16|mKIAA4015	RNA binding motif protein 6	protein-coding	7.76341123927204	7.93179250053932	7.56941599345497	7.74885952458348	7.75898909332173	7.74697862149341	8.05584060651432	7.5914780899261	0.0496663330951402	0.788169949061365	0.918005445808333
Merged-chr2-32602897-4	chr2	32602800	32603000	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025311, intron 1 of 4)	intron (NM_001025311, intron 1 of 4)	3191.0	NM_001025311	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	5.35188592621863	5.17307141036766	5.24385176080578	5.22031620138529	4.8307692923496	4.90186976681437	4.65816457457537	4.76185189397435	-0.891621935579049	0.0046956076027582	0.0453629615441397
Merged-chr2-11239732-3	chr2	11239632	11239832	+	975.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 4 of 17)	intron (NM_008859, intron 4 of 17)	67350.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	3.87278768001615	4.31652198007034	4.40311957287697	4.54641876370655	4.00746548508323	4.31477440155762	4.12337809307264	4.31885654372158	-0.318450412352097	0.460825543525002	0.742778563463907
Merged-chr12-55303315-4	chr12	55303203	55303403	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021529)	promoter-TSS (NM_021529)	-303.0	NM_021529	59032.0	Mm.427307	NM_021529	ENSMUSG00000021022	Ppp2r3c	4930511A21Rik|5730412A08Rik|G4-1|G5pr	protein phosphatase 2, regulatory subunit B'', gamma	protein-coding	4.50237143738245	4.72331536574613	5.3513473254513	4.65519888616912	4.7398503309823	5.1195216947955	5.05101207778922	4.76035033542404	0.163741491889386	0.666279500281091	0.861914264044268
Merged-chr4-135129028-4	chr4	135128941	135129141	+	909.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019732, intron 1 of 5)	intron (NM_019732, intron 1 of 5)	8396.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	4.59261261319592	4.74426160891664	4.08075479996919	4.33008944301942	4.19785340705699	4.09608803124363	4.16375664428378	4.22675083609369	-0.69192607453836	0.0963216698918239	0.340062751530504
Merged-chr16-87716529-4	chr16	87716430	87716630	+	983.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 2 of 4)	intron (NM_007520, intron 2 of 4)	17576.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	5.63756468055475	4.82448387901544	5.50729442245163	5.9406701007183	5.65321079600844	5.40915918552257	5.50673207005863	5.63454829064657	0.00672271598478308	0.984393191208567	0.994312737627793
Merged-chr14-47649267-4	chr14	47649190	47649390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347524)	promoter-TSS (NM_001347524)	-21.0	NM_001347527	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	6.14439824866486	6.1974777003295	5.7711839415957	6.19745792812249	6.10711886230356	5.81469879291383	5.60796373269798	5.79244641564807	-0.382534983361214	0.149800713909979	0.432211796327458
Merged-chr1-91755332-3	chr1	91755195	91755395	+	608.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46166.0	NM_007855	13345.0	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	2.81618024798495	2.71121044921329	2.75965327806689	2.95674752603186	2.47593477090517	2.45347994362329	2.56403732366682	2.35213437349813	-2.01286423408304	0.00765497382623161	0.0651217141122672
Merged-chr1-91523967-3	chr1	91523870	91524070	+	827.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028718, intron 13 of 14)	intron (NM_028718, intron 13 of 14)	-16595.0	NM_001039126	65247.0	Mm.234152	NM_023046	ENSMUSG00000026311	Asb1	1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146	ankyrin repeat and SOCS box-containing 1	protein-coding	3.95687830301364	3.66810250669628	3.76152482199131	3.99190974215545	3.51500592598987	3.82648746331864	4.02657754035063	3.75940907391604	-0.203087426473202	0.669430754016836	0.863479905771059
Merged-chr6-54082718-4	chr6	54082616	54082816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	42784.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	7.50153097070278	7.57901001882894	7.81598504147483	7.52787667294657	7.52480521736842	7.68937674515971	7.51163585292795	7.47877305051293	-0.0736337385555655	0.676864160995947	0.867299984077957
Merged-chr8-120323225-4	chr8	120323115	120323315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94985.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	6.48464347363718	6.73778610748367	6.89454329549462	7.0312239228228	6.51088795187485	6.37538890671361	6.43533027353745	6.39184796757932	-0.552774396115218	0.0136811274033167	0.0984043014794546
Merged-chr11-72411652-3	chr11	72411590	72411790	+	918.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177776)	promoter-TSS (NM_177776)	23.0	NM_177776	276829.0	Mm.46732	NM_177776	ENSMUSG00000045667	Smtnl2	D130058I21Rik	smoothelin-like 2	protein-coding	3.59896370685553	3.46324244724893	3.54783709505038	3.66175225630421	3.4200493227209	3.36485343130133	3.42519427125296	3.59740069325865	-0.405191366310416	0.415040076218241	0.709448322209797
Merged-chr9-71188795-3	chr9	71188688	71188888	+	923.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110517, intron 5 of 5)	MLT1D|LTR|ERVL-MaLR	20012.0	NR_110517	102635087.0	Mm.444536	NR_110517	ENSMUSG00000111429	Gm32511	-	predicted gene, 32511	ncRNA	3.37275013538279	3.83625148901659	3.23901108944927	3.34948845954995	3.96395980311044	3.77858383143007	3.64429513401484	3.55043718430115	0.867027023231832	0.0992164018767994	0.345420604998225
Merged-chr15-85735427-3	chr15	85735340	85735540	+	867.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113418)	promoter-TSS (NM_001113418)	-124.0	NM_001113418	19013.0	Mm.212789	NM_011144	ENSMUSG00000022383	Ppara	4933429D07Rik|AW742785|Nr1c1|PPAR-alpha|PPARalpha|Ppar	peroxisome proliferator activated receptor alpha	protein-coding	3.66582499154294	3.55421860955198	3.35788799790947	3.30248032246853	3.34628694662825	3.41164684089725	3.16095290197286	3.4129106472749	-0.471656426557906	0.375907427443034	0.678777106927311
Merged-chr8-104340714-4	chr8	104340614	104340814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024217, exon 1 of 5)	5' UTR (NM_024217, exon 1 of 5)	120.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	7.19829149866225	7.10431575915025	7.46523670819254	7.34686954958335	7.45692596178492	7.21983648993983	7.62330881544594	7.194499920555	0.137657651302008	0.488006764930962	0.761126159857708
Merged-chr12-85379432-4	chr12	85379335	85379535	+	958.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-4718.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	5.69640967055368	4.84933218988399	5.17829192748532	5.60312448748738	4.99724302476305	4.9478600448285	5.35815592889875	4.88829425092577	-0.591618777898008	0.0963301712458668	0.340062751530504
Merged-chr6-120463243-4	chr6	120463123	120463323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008359)	promoter-TSS (NM_008359)	26.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	5.64832439835862	6.04780883443407	5.72730295198631	5.59103658690946	5.87324665799744	5.9271760130462	5.62086167025317	5.82020029464554	0.0934186080744269	0.726149888182328	0.891025770427008
Merged-chr14-46883617-4	chr14	46883466	46883666	+	960.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 1 of 12)	CpG	601.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	4.35973058380065	4.43666838322422	4.6772883597301	4.20931397897149	4.58757877729604	4.2403729034513	4.68888129139652	4.35769485566376	0.156394524027265	0.689246281595581	0.873230947237404
Merged-chr5-63942299-3	chr5	63942197	63942397	+	802.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145923, intron 1 of 6)	intron (NM_145923, intron 1 of 6)	26600.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	3.49446014051158	3.16771244105552	3.38899757112437	3.68642502359247	3.3531291728945	3.0394525964231	3.26197809287415	3.54265737028901	-0.497876608739489	0.386632998601389	0.687770216087633
Merged-chr17-29432120-4	chr17	29432034	29432234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-58911.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	8.16999434246102	8.37059935120105	8.47096937302834	8.05339926309614	8.52032862390416	8.62895356688399	8.47998014032655	8.34657298063951	0.288049946623931	0.0908597168186025	0.329365971820332
Merged-chr7-92638343-4	chr7	92638244	92638444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1202.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	7.33093313726958	7.30667946247358	7.22837785869662	7.06530460164752	7.442967371362	6.89257297002714	7.0675269801368	7.16801731102263	-0.0809977531533257	0.694721449953163	0.876091214911152
Merged-chr14-61046528-4	chr14	61046433	61046633	+	926.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013869, exon 1 of 10)	5' UTR (NM_013869, exon 1 of 10)	322.0	NM_013869	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	4.17420139960086	4.27903688414386	4.70275542145335	4.46287908958677	4.60532617532011	4.72234348543369	4.60658138354324	4.83599573674813	0.597008962033336	0.107365243337669	0.361382260156614
Merged-chr15-67177959-4	chr15	67177882	67178082	+	921.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1100.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	4.18534931123378	4.40673952104417	4.68105101927636	4.65490510487153	4.08967120742572	4.5878633716642	4.11768947584904	4.41313909740861	-0.456104380056485	0.267652243564693	0.579346157544437
Merged-chr11-117483122-4	chr11	117483030	117483230	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1238.0	NR_130966	432615.0	Mm.126359	NR_130966	ENSMUSG00000069588	Gm11733	-	predicted gene 11733	ncRNA	4.95981413045694	5.09170146553805	4.82469499434399	4.7571491062129	4.57226677284101	4.72243288906191	4.38524261486973	4.82146025535766	-0.580470151127641	0.0995005830557858	0.345986907734625
Merged-chr4-3607415-4	chr4	3607309	3607509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054089, intron 12 of 12)	intron (NM_054089, intron 12 of 12)	32530.0	NM_054089	116940.0	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	5.87273431096148	6.09526727491834	5.4136279074137	5.89203212123118	6.38230265670996	6.14319541465016	6.0228572089207	6.39550104974381	0.623388891208386	0.0190161697081047	0.123657221236359
Merged-chr13-21408557-4	chr13	21408486	21408686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5831.0	NM_023685	72739.0	Mm.296071	NM_023685	ENSMUSG00000021327	Zkscan3	2810435N07Rik|AA408594|AI132359|Skz1|Zf47|Zfp-47|Zfp306|Zfp307|mszf35	zinc finger with KRAB and SCAN domains 3	protein-coding	7.46555759779391	7.29876797223042	7.51040888550563	7.6658741645193	6.51959777678557	6.60301072493223	7.00154985721538	6.95489449727627	-0.982960794124675	3.65074150853433e-06	0.000112200401483577
Merged-chr9-22484959-6	chr9	22484838	22485038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178415, intron 2 of 22)	PB1D10|SINE|Alu	9223.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	5.00964869122436	4.9641838248764	5.51874828619208	5.44319049726749	4.78675804332148	4.87782193051245	4.71887051313242	5.10730716226032	-0.748632672635482	0.0282203067133758	0.160884988716642
Merged-chr7-96483585-1	chr7	96483485	96483685	+	853.0	f1_balb.idr	intron (NM_011858, intron 3 of 32)	MLT1J|LTR|ERVL-MaLR	-141621.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	3.44185739488593	3.26478028547335	3.22037660814695	3.35506895630442	3.21156508759043	3.06122710142049	3.3232245746486	3.49016276436982	-0.160392721049745	0.768079431497461	0.909266558474345
Merged-chr1-55529132-6	chr1	55529035	55529235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	123189.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	4.91782753802687	4.70103779475812	5.67030054926231	5.32728155581935	4.84077965683162	4.89536432744194	4.96828586008079	5.38612431648547	-0.321258344013463	0.396418547025876	0.69519327480908
Merged-chr11-111096807-4	chr11	111096718	111096918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30654.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	7.22901890510658	6.84185225709428	7.13048842376257	7.0461315079669	7.22046925951828	7.2602676830844	6.88215790142794	7.32742529203474	0.162389030120575	0.423876393065517	0.715735108934157
Merged-chr7-19306830-10	chr7	19306703	19306903	+	921.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347586, intron 2 of 4)	intron (NM_001347586, intron 2 of 4)	3242.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	3.74540237386802	3.55166541604682	3.48316755044633	3.22479522557221	3.70964515668626	3.65731520515495	3.6319641209852	3.59275665794835	0.484631294403451	0.334181429310362	0.644805241742718
Merged-chr11-8624757-4	chr11	8624667	8624867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	CpG	39768.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.55898998237386	5.71957302244468	5.69290357175071	5.91897837803541	5.9028516684302	5.70790402960815	5.7835917774755	5.30991900674894	-0.0643749792544442	0.819139870695977	0.930742663420535
Merged-chr3-94954020-4	chr3	94953925	94954125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017395)	promoter-TSS (NM_017395)	-83.0	NM_017395	53970.0	Mm.24308	NM_017395	ENSMUSG00000005774	Rfx5	-	regulatory factor X, 5 (influences HLA class II expression)	protein-coding	8.59547112428708	8.71535599318486	8.51140642848143	8.62202248719875	8.54384342148785	8.52100915685418	8.54821871284632	8.50592590455565	-0.10627444734171	0.461088789132117	0.742936442248204
Merged-chr3-9832924-3	chr3	9832814	9833014	+	930.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	765.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.07369989774103	3.737399542805	4.36921780814641	3.64458019567875	3.68437214594619	3.49131043624806	3.67372734934237	3.6290282672383	-1.04798938230815	0.0418580488697472	0.207263586817373
Merged-chr11-20446037-4	chr11	20445936	20446136	+	848.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97217.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	3.78217879737132	3.68943695709838	4.06388641424224	3.71378359377918	3.952113475762	3.95433300730204	3.86746062260213	3.72712203201063	0.199172065545414	0.658737860521187	0.857995155933081
Merged-chr14-19986891-4	chr14	19986817	19987017	+	974.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9668.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	6.00985688069122	5.30185280189791	5.66519652197395	5.75288157998316	5.34906416550963	5.17777200807898	5.68490735500805	5.66117162520946	-0.376591747278795	0.219220949223553	0.526720734502047
Merged-chr5-144768649-4	chr5	144768496	144768696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081362)	promoter-TSS (NM_001081362)	-196.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	5.58691068690009	5.39305366712004	5.53683726746186	4.89729057026128	5.25003146681922	5.45399609643189	5.31325428125216	5.76935021947781	0.168449695619194	0.608484772375819	0.830675049522223
Merged-chr16-22517771-4	chr16	22517646	22517846	+	953.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_130988)	TTS (NR_130988)	6266.0	NR_130988	78082.0	Mm.243927	NR_130988	ENSMUSG00000089874	9230117E06Rik	-	RIKEN cDNA 9230117E06 gene	ncRNA	4.47759009384044	4.82665082067233	4.83685854104905	4.93590011813945	4.73172190165313	4.6095578433985	4.58825702788131	4.79845003088881	-0.223101298903993	0.523859798283008	0.782647016014066
Merged-chr16-16527411-4	chr16	16527306	16527506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301818)	promoter-TSS (NM_001301818)	5.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	6.30476603243988	6.58425412068463	6.48216465314855	6.56090185611223	6.54311862729584	5.74208370223123	6.75249641120092	6.18251550637558	-0.180531105799424	0.511863212545451	0.775668292015302
Merged-chr15-66825586-1	chr15	66825486	66825686	+	740.333313	f0_balb.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	6243.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	3.59051744993532	3.31245978296554	3.59106708039356	3.48529948500736	3.15397020828347	3.25305890560835	3.37270567234469	3.14051352341731	-0.974611341715392	0.0713527602792899	0.286695914418265
Merged-chr17-81518502-4	chr17	81518400	81518600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	219887.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	5.44909848688195	5.65199776544749	5.35840091873576	6.17571302860095	5.66644298383205	5.25907335854203	5.50772620447568	5.5589002667414	-0.359424726310357	0.266784043750032	0.57842963999018
Merged-chr8-84990533-4	chr8	84990453	84990653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167991)	promoter-TSS (NM_001167991)	-42.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	7.73273917685568	8.03268976719469	7.90791175466168	7.50889956278202	7.83474514778254	7.95919490386928	7.75176043139957	7.74489047700996	0.0291444313876725	0.877029503241746	0.953885505336535
Merged-chr13-24697077-3	chr13	24696979	24697179	+	914.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080381, intron 13 of 14)	UCON28c|Unknown|Unknown	58431.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	3.51171268376321	3.56700792612812	3.39681823011682	3.89840258123088	3.33999200755029	3.38281262871892	3.78916253942014	3.39514118805099	-0.431260420522098	0.423424650680382	0.715311701020053
Merged-chr12-86047799-7	chr12	86047707	86047907	+	942.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081423, intron 33 of 33)	intron (NM_001081423, intron 33 of 33)	31234.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	5.18412536216062	4.69217020861324	5.08752045228574	5.54568427195249	5.11031380308844	4.78685904925313	5.4611002191894	5.24242138423136	-0.011757275292214	0.97439382376063	0.990880609058694
Merged-chr2-167680891-4	chr2	167680822	167681022	+	795.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7993.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	3.52157948771999	3.28598833116349	3.41218880897366	2.87834247407369	3.51783717764935	3.74417411667898	3.1505459128462	3.66884394743658	0.839470275195775	0.15232783095802	0.436302067512812
Merged-chr7-116504846-1	chr7	116504746	116504946	+	855.0	f0_balb.idr	intron (NM_001130479, intron 1 of 13)	intron (NM_001130479, intron 1 of 13)	477.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	3.52567851949092	3.70859060967619	3.95467748243264	3.87983042960407	3.69860303203584	3.93076688436547	4.18154293614493	3.58609718712679	0.242742544015059	0.619184493013434	0.836377892175789
Merged-chr15-88734319-4	chr15	88734223	88734423	+	938.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033274)	promoter-TSS (NM_001033274)	-104.0	NM_001033274	223770.0	Mm.254438	NM_001033274	ENSMUSG00000022387	Brd1	1110059H06Rik|AI316859|mKIAA4191	bromodomain containing 1	protein-coding	4.71446844236826	4.74633200239445	5.18222640148248	4.90032886105211	4.71314498563059	4.58030396877427	5.09967208602253	4.82761260963022	-0.160481502486187	0.647675250266744	0.851764035155136
Merged-chr5-35893333-3	chr5	35893239	35893439	+	931.855591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027373)	promoter-TSS (NM_027373)	20.0	NM_027373	70292.0	Mm.125167	NM_027373	ENSMUSG00000029094	Afap1	2600003E23Rik|9630044L16Rik|AI848729|Afap|mKIAA3018	actin filament associated protein 1	protein-coding	5.37590870578122	5.39702252410975	4.95003369966777	5.46817494703071	4.27712866343107	4.13648539238973	4.44286661061098	4.35862272554905	-2.17067392109615	6.76392595987859e-09	3.72927564599689e-07
Merged-chr9-50593719-3	chr9	50593604	50593804	+	816.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	10145.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	3.75968733424778	4.06442391582387	4.03556535089843	3.49078312627709	3.70940389502301	3.59199268977677	3.63915320588865	3.59473732792449	-0.639452206587956	0.202497429610259	0.50494183017091
Merged-chr17-84146053-4	chr17	84145934	84146134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41913.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	6.75309421668117	6.48340807813086	5.84883922478837	6.18599008811775	6.37173155775031	6.15328046075561	6.14226650412141	6.44442428143063	-0.102104851240825	0.706845313546829	0.882258354066458
Merged-chr6-145860549-3	chr6	145860450	145860650	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_024469, exon 5 of 5)	3' UTR (NM_024469, exon 5 of 5)	4870.0	NM_024469	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	3.592860625963	3.54195491150535	3.74113138612607	4.24498753732355	2.98832565768863	3.28063603725006	3.22543020972017	3.36422627890981	-2.19165603313233	0.000286390679733396	0.00488497536370558
Merged-chr8-123024455-3	chr8	123024340	123024540	+	938.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	17844.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	4.3223631209663	4.36358357052799	3.95918057111782	4.00836103860969	4.04047561450298	3.97141563088731	4.26310596688823	3.95693970306647	-0.272883537243786	0.524716076498202	0.783073646450333
Merged-chr6-83583102-4	chr6	83582995	83583195	+	847.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_078345, intron 6 of 7)	Lx8|LINE|L1	-10591.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	3.74905935513925	3.75257666377997	3.85555489409761	3.66114700858435	4.0401495066131	3.75289510038707	4.14993351351611	4.0419168900572	0.732052981184424	0.094499325295312	0.336321220651921
Merged-chr14-45659083-4	chr14	45658973	45659173	+	871.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039106)	promoter-TSS (NM_001039106)	-930.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	3.52375520208034	3.80944048450512	3.87001597854787	3.96511662878444	4.09545145221196	3.70604456208014	4.23914480978808	3.96522163105301	0.568116326779936	0.22730422215895	0.535996291786981
Merged-chr5-129501244-4	chr5	129501059	129501259	+	860.78125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172276)	promoter-TSS (NM_172276)	-72.0	NM_001359952	231769.0	Mm.288714	NM_172276	ENSMUSG00000029439	Sfswap	1190005N23Rik|6330437E22Rik|AI197402|AW212079|SWAP|Sfrs8|Srsf8	splicing factor SWAP	protein-coding	3.34981408660317	3.6477150598766	3.64993079028662	3.61861048969996	3.37637022593699	3.87360146698654	3.68700526175936	4.01719096953685	0.54572212361926	0.28572494817016	0.597437981101283
Merged-chr14-55590194-4	chr14	55590099	55590299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029855, intron 2 of 10)	MIR3|SINE|MIR	822.0	NM_011190	19188.0	Mm.371573	NM_011190	ENSMUSG00000079197	Psme2	AA589371|AI788882|PA28b	proteasome (prosome, macropain) activator subunit 2 (PA28 beta)	protein-coding	5.21119489702826	5.25641510807775	5.11457174613949	4.63946046733359	5.52095635865353	5.35483483575868	5.18627273147455	5.26949931036987	0.532357661439678	0.104991247926807	0.356374561821901
Merged-chr1-97770065-4	chr1	97769970	97770170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173760)	promoter-TSS (NM_173760)	22.0	NM_173760	227399.0	Mm.220817	NM_173760	ENSMUSG00000040648	Ppip5k2	AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433	diphosphoinositol pentakisphosphate kinase 2	protein-coding	7.75529480429948	7.63609806375888	7.54248068754538	7.9992567664356	7.82536465738138	7.49623402377694	8.1740127851968	7.47016964383991	0.0328210386925386	0.881496588259593	0.955384724180766
Merged-chr5-43102792-4	chr5	43102694	43102894	+	970.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130669.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	5.93767759442998	5.7139386123571	5.63506662783055	6.27518534409384	5.53237438734145	5.58276392990475	5.60655352079833	5.19564597216304	-0.738085812581956	0.0131109378575932	0.0955584114034019
Merged-chr4-138866686-2	chr4	138866568	138866768	+	734.56665	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3199.0	NM_001122954	18784.0	Mm.486532	NM_011110	ENSMUSG00000041193	Pla2g5	PLA2|sPLA2	phospholipase A2, group V	protein-coding	3.21052952032357	3.3162652209738	3.15405878347239	3.04741123814202	3.12678972528111	2.85489623225754	3.02211602582221	3.31569055858728	-0.348962104489789	0.553119399732557	0.799974396526481
Merged-chr17-29360893-4	chr17	29360806	29361006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013710)	promoter-TSS (NM_013710)	-8.0	NM_013710	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	6.74437232010104	6.94914536570258	6.42536539518629	6.63441364173833	6.77957606171115	6.69018082607836	6.60862640536634	6.28641832794101	-0.132528979140043	0.567397189669552	0.808229609203301
Merged-chr4-107277079-4	chr4	107276956	107277156	+	851.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355460, intron 4 of 5)	intron (NM_001355460, intron 4 of 5)	23153.0	NM_028394	72938.0	Mm.21787	NM_028394	ENSMUSG00000063172	Hspb11	2900042B11Rik|IFT25|PP25	heat shock protein family B (small), member 11	protein-coding	4.29180749321371	3.8417451623067	3.90361545555996	4.02307824103008	3.86688469410214	3.861786038848	3.93650080933379	3.84984709517419	-0.403449845172752	0.359735083154823	0.665443059431823
Merged-chr2-6442513-4	chr2	6442428	6442628	+	954.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001080548, exon 15 of 15)	3' UTR (NM_001080548, exon 15 of 15)	89792.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	4.45348657909049	4.46569763792092	5.12608927022597	5.05730898812751	4.69430706024638	4.14823506930651	4.60652267007044	4.94652485145518	-0.393589793681696	0.354035456145461	0.660831376621657
Merged-chr17-17766669-4	chr17	17766577	17766777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	62736.0	NM_001104539	626942.0	Mm.404019	NM_001104539	ENSMUSG00000092120	Vmn2r90	EG626942	vomeronasal 2, receptor 90	protein-coding	5.62877431185273	5.43711961400339	5.24004260612551	5.73896111781892	5.756774818027	5.80388398748181	5.46607527565688	5.81692025094483	0.297448843956339	0.294259032043657	0.606540705485794
Merged-chr10-8849636-4	chr10	8849534	8849734	+	959.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	RSINE1|SINE|B4	36436.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.093379016525	5.40579465609078	5.30296707734077	5.61877234701416	4.43982730655462	4.90169559613775	4.85987835002192	4.53304555764107	-1.37471933903976	7.17416162136253e-05	0.00153394307613987
Merged-chr7-84211647-3	chr7	84211575	84211775	+	958.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59782.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	3.59870953365863	3.52252153627459	3.5992027437707	2.68573882131752	4.67189628384615	4.17147225535873	4.41790818131957	4.12797725013795	2.79341262029878	6.54150679097311e-06	0.000188509276062622
Merged-chr2-33973609-4	chr2	33973503	33973703	+	820.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85657.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	4.01252351265899	3.85423207204452	4.15299936933706	3.57624747219915	4.18324192103166	4.03425774833713	4.17709040891631	4.31549953212539	0.758696590068218	0.086641798448644	0.321135001654657
Merged-chr12-69371409-4	chr12	69371268	69371468	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007481)	promoter-TSS (NM_007481)	-782.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	4.59882586303981	5.05633216867197	4.59954594743756	5.05240749136039	4.6649191438378	4.6888877871443	4.53541892156619	5.08946629342842	-0.208415971902651	0.576073711856963	0.813384724594675
Merged-chr2-106974479-4	chr2	106974370	106974570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025102)	promoter-TSS (NM_001025102)	-73.0	NM_001025102	212772.0	Mm.381231	NM_173750	ENSMUSG00000027122	Arl14ep	2700007P21Rik|4930448O08Rik|ARF7EP	ADP-ribosylation factor-like 14 effector protein	protein-coding	7.54953400687707	7.61291841016218	7.65476132510418	7.9810236777924	7.30028276269687	7.45746845627719	7.78742394782189	7.35062264987976	-0.311331526956511	0.126023831063764	0.394400732997171
Merged-chr10-62287867-4	chr10	62287768	62287968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 13 of 21)	intron (NM_010438, intron 13 of 21)	35430.0	NM_009314	21337.0	Mm.8054	NM_009314	ENSMUSG00000020081	Tacr2	Nk2r|Skr|Tac2r	tachykinin receptor 2	protein-coding	7.35040724971907	6.76068167659155	7.52443629995036	7.59994400678886	6.79254409976964	6.83116247012766	7.27550085422838	7.06327836958163	-0.476818947463821	0.0522568936095094	0.238038745055118
Merged-chr18-11676802-3	chr18	11676711	11676911	+	841.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045527, intron 3 of 17)	PB1D9|SINE|Alu	19462.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	3.39927262003065	3.48397772947447	3.89778963620545	3.50372983313961	3.46941033667807	3.57488964059532	3.32619157940972	3.67085659282579	-0.214362009750967	0.677407627916267	0.86767362886796
Merged-chr3-30904812-4	chr3	30904704	30904904	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001165955, exon 14 of 14)	3' UTR (NM_001165955, exon 14 of 14)	48854.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	3.93093884029948	4.1019059927764	4.5153339413487	4.57480950994117	4.33804248908811	3.99589824029156	4.12321274838534	4.31833169468748	-0.279365398559727	0.526010531580652	0.783478854115848
Merged-chr17-83808234-4	chr17	83808140	83808340	+	850.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 16 of 16)	intron (NM_054082, intron 16 of 16)	38550.0	NM_025325	107766.0	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	4.11225903468367	3.99863854256006	4.0615547711632	4.37001307440303	4.37806548097815	4.55358363814382	4.28066758063407	4.42139576712781	0.594195035787033	0.141683356213633	0.418839287836592
Merged-chr8-13889730-3	chr8	13889674	13889874	+	979.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359059, intron 1 of 2)	intron (NM_001359059, intron 1 of 2)	497.0	NM_001359059	66423.0	Mm.29063	NM_025556	ENSMUSG00000031458	Coprs	1700029I03Rik|2410022L05Rik|AA409325|AI256813|C85432|Copr5	coordinator of PRMT5, differentiation stimulator	protein-coding	3.79192081503342	3.50901950906287	3.74297894878676	3.87247586962632	3.79675955138454	3.51202577424532	3.67677764806859	3.79023692928208	-0.118251665681149	0.804413047453623	0.924756680030242
Merged-chr3-138958748-4	chr3	138958659	138958859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 7 of 13)	intron (NM_001356388, intron 7 of 13)	116442.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	5.72108593171262	5.94375456191746	6.06985933481572	6.30691918709998	5.80540289348764	6.07181936596836	5.95551856504189	5.82041302409982	-0.213218721941956	0.419052889284633	0.712251159515261
Merged-chr7-44869288-4	chr7	44869150	44869350	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133949, intron 1 of 11)	CpG	538.0	NM_133949	84113.0	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	4.85487435777343	5.02523517628252	4.99786923059248	5.05410155380092	4.80726308647993	4.83061744870634	4.97370843712194	5.15167148790149	-0.0961874701697237	0.763518370091533	0.907229465260431
Merged-chr15-64223603-3	chr15	64223497	64223697	+	840.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	89076.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	3.35734695954582	3.13484674625019	3.30571678682364	3.63445159011273	2.99539290338416	2.97387935806386	3.06279678189265	3.00635085376027	-1.50472008449671	0.0123358938304259	0.0916010224205484
Merged-chr8-117054308-4	chr8	117054210	117054410	+	993.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 14 of 42)	intron (NM_029686, intron 14 of 42)	28139.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	5.00319519155581	5.13660297138351	5.00402766318818	5.28598736727771	4.95117499402684	4.91431546224228	5.17023534016336	4.85460669691135	-0.289751572731449	0.360257294138935	0.665751588636582
Merged-chr11-114821465-3	chr11	114821360	114821560	+	786.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22536.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	3.7982429441545	3.60350102599195	3.53739400548106	3.54649051597057	3.57039207453577	3.5941937864313	3.58008161577713	3.97229737833023	0.210813447614362	0.663015103753037	0.860346663968351
Merged-chr4-95849798-4	chr4	95849711	95849911	+	957.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 14 of 15)	intron (NM_001113412, intron 14 of 15)	117224.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	4.5954375452852	4.57834884235149	4.71470948045992	4.86034844246196	4.80722353121685	4.54912241122661	4.83373693875128	4.67334052694744	0.0434236489963599	0.90060477844236	0.963161804192488
Merged-chr18-38404470-4	chr18	38404378	38404578	+	956.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR48|LTR|ERV1	-14429.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	5.12344544651077	5.29369045339595	5.1840692904448	5.00290003437722	4.66036747367773	4.95090033553382	4.66959055367237	4.77101259390591	-0.774582339255664	0.0178804244184459	0.118645542060274
Merged-chr19-41900706-4	chr19	41900610	41900810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4557.0	NM_199447	107094.0	Mm.276044	NM_199447	ENSMUSG00000035049	Rrp12	AA408556|AA536972|mKIAA0690	ribosomal RNA processing 12 homolog (S. cerevisiae)	protein-coding	6.75747539119264	6.43966064431036	6.75866482313142	6.72082478299376	6.30498239972551	6.47900721058252	6.39933739236965	6.54604183452871	-0.359302910392107	0.0954211296916923	0.338064813891177
Merged-chr3-87028953-4	chr3	87028862	87029062	+	949.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-29622.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	4.78261950628419	4.57409077085175	4.85496593949791	4.82568744242142	4.67167205625405	4.58048209173185	4.76071526587811	5.01434808902494	-0.00253162561471556	0.994135585030141	0.997808378905769
Merged-chr1-14820077-3	chr1	14820006	14820206	+	812.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-64140.0	NM_010827	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	3.8215582099602	3.57998011345855	3.55906472211891	4.06035722687522	3.20224931552249	3.73471548930222	3.54562384989425	3.95480634000602	-0.435022769650906	0.429176747992849	0.720123800603074
Merged-chr5-24603135-4	chr5	24603023	24603223	+	830.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1121.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	4.56299905853037	4.21895126610298	4.86096101595501	4.52371386702873	4.10635263161959	4.19551167915507	4.20550888187413	4.31480455336558	-0.84111559481773	0.0371889021273335	0.192345761897203
Merged-chr7-128461355-3	chr7	128461261	128461461	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009383, exon 1 of 12)	5' UTR (NM_009383, exon 1 of 12)	152.0	NM_009383	21843.0	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	5.47849029678327	5.62469295934287	5.88266203725203	5.32863640201817	5.93546881597899	6.30665180610015	6.15626426845074	6.23680380871206	0.936694551322717	0.000462530854590355	0.00724207736447138
Merged-chr5-135487161-3	chr5	135487076	135487276	+	865.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	(CCA)n|Simple_repeat|Simple_repeat	57946.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	3.21591595996871	3.32118485317723	3.27856475955676	3.26726614982955	3.41639965765488	3.61764059550557	3.48697696637518	3.39306243617233	0.720894314236046	0.154239778496014	0.439444149764552
Merged-chr3-142619834-4	chr3	142619733	142619933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010260)	promoter-TSS (NM_010260)	-830.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	6.00634518548533	6.36268864370737	5.82056671149413	5.52751653704717	6.12914575476418	6.30611874312569	6.19410697935097	5.79104879572512	0.253813807707566	0.383526176096349	0.685433400480921
Merged-chr9-108404593-3	chr9	108404487	108404687	+	752.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001135198, exon 7 of 7)	3' UTR (NM_001135198, exon 7 of 7)	11753.0	NM_053216	112418.0	Mm.78287	NM_053216	ENSMUSG00000032611	1700102P08Rik	AI593206	RIKEN cDNA 1700102P08 gene	protein-coding	3.90962508041712	3.75387479897003	3.76034968267611	3.54734597740056	4.16141591511002	3.70865189051954	3.89321167519062	3.75823254358855	0.481756893121742	0.302952218754599	0.615482556585475
Merged-chr1-97770452-4	chr1	97770337	97770537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173760)	promoter-TSS (NM_173760)	265.0	NM_001310773	252876.0	Mm.86090	NM_026250	ENSMUSG00000026333	Gin1	4930429M06Rik|8430411H10Rik|Gin-1|Zh2c2	gypsy retrotransposon integrase 1	protein-coding	5.60961736598939	5.51017530379382	5.63671017097905	5.57169409746284	5.63801869975803	5.31929038197184	6.07389402710021	5.65828645156589	0.204105446710565	0.47363378820464	0.751276449851095
Merged-chr1-93754878-4	chr1	93754771	93754971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025920)	promoter-TSS (NM_025920)	-33.0	NM_025920	67026.0	Mm.272356	NM_025920	ENSMUSG00000026279	Thap4	2010320B01Rik	THAP domain containing 4	protein-coding	7.14577563747052	7.32892072553793	7.54516125140244	7.48253900375836	7.31161875421757	7.23782963126444	7.58406397631973	7.49548161063219	0.0318847485813029	0.868564166515832	0.950762137632278
Merged-chr5-64382604-4	chr5	64382491	64382691	+	996.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85351.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	4.79994264772304	4.83329865960915	4.76334335034331	4.54501295025048	4.83433590205161	4.81955466573294	5.0403856204361	4.68209030872726	0.257687030573018	0.446001856821812	0.731774752267646
Merged-chr17-5625672-7	chr17	5625494	5625694	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	RMER15|LTR|ERVL	132994.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	3.69484774006484	3.50575390101477	3.59301816398772	3.54452723746117	3.54870763212314	3.59776245727903	3.2174434018712	3.87560843869729	-0.0104720186499847	0.983771838717172	0.994163352140976
Merged-chr4-82321298-3	chr4	82321204	82321404	+	595.822266	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286127, intron 9 of 10)	intron (NM_001286127, intron 9 of 10)	184475.0	NM_001286127	18028.0	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	3.57502275415561	3.3787345439917	3.57561147652062	3.33851949050132	2.79538798951456	3.06215907431968	2.79132241038184	3.15075316584439	-2.19309029772244	0.000752215372190233	0.0107148164853169
Merged-chr7-16628291-4	chr7	16628204	16628404	+	925.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136929, intron 2 of 2)	intron (NR_136929, intron 2 of 2)	-13311.0	NM_172739	232906.0	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	4.36098139041858	4.60336918571336	4.54637999035997	4.77647606792953	4.78494930888944	4.67864749183373	4.7590420429877	5.00700626487348	0.451674722062049	0.204718062050894	0.508129404704835
Merged-chr12-104751642-4	chr12	104751518	104751718	+	985.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148948, intron 1 of 26)	CpG	334.0	NM_148948	192119.0	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	4.66007949429364	4.52953408145088	4.53753372209026	4.6452694703023	4.548856698855	4.71259617270748	4.8526931589853	4.90571342275973	0.334804288729753	0.333530976584533	0.64427395363095
Merged-chr13-37969545-4	chr13	37969446	37969646	+	877.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24662.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	4.24861972646151	3.99081966267075	3.94430988665584	4.05841438621794	4.55859169499129	4.33034914097256	4.39817868658534	4.56526873609711	0.988328419460127	0.0108576830918547	0.0837493524918862
Merged-chr4-95232635-1	chr4	95232535	95232735	+	844.0	f0_balb.idr	Intergenic	Intergenic	-180413.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	4.07910708324334	3.49039160211347	3.44227908061804	3.55475107389403	2.89084167122991	3.24840084623621	3.05256048880872	3.13152368367058	-2.26702823247008	0.000313199947643713	0.00524670724248809
Merged-chr11-17212272-1	chr11	17212172	17212372	+	958.0	f0_c57.idr	promoter-TSS (NM_025443)	promoter-TSS (NM_025443)	379.0	NM_178909	103784.0	Mm.298132	NM_178909	ENSMUSG00000078970	Wdr92	AI553587|HZGJ	WD repeat domain 92	protein-coding	4.25008801166185	4.51498942858416	4.52964425883512	4.51850245747825	4.60507643000145	4.74342644785831	4.80324171943994	4.72026063419812	0.546221251234385	0.121641873909557	0.386326385106567
Merged-chr10-12867015-4	chr10	12866901	12867101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5266.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	7.45123704168941	7.6550311706102	7.51930692583044	7.63260083980753	7.54341025030598	7.49587198062046	7.95474282467858	7.60372799849483	0.118170100877465	0.526502642878832	0.783769353079
Merged-chr9-123968756-4	chr9	123968654	123968854	+	892.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009912)	promoter-TSS (NM_009912)	-62.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	4.37655522108873	4.33661809836861	4.4585790685331	4.29051831075673	4.16253040428376	4.1123791882268	4.35734487778109	4.53195678716591	-0.15077082301855	0.698916442770632	0.878539424998601
Merged-chr6-97430472-4	chr6	97430389	97430589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	28797.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	5.9917928392701	5.6740343605491	5.66456332769631	5.5288538057475	5.54010434851992	5.83798394075666	5.29559532303709	5.52767007422529	-0.261571802753218	0.361428777063483	0.666724030938332
Merged-chr15-76243465-4	chr15	76243357	76243557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163575)	promoter-TSS (NM_001163575)	-17.0	NM_001163575	671535.0	Mm.373750	NM_001163575	ENSMUSG00000063268	Parp10	-	poly (ADP-ribose) polymerase family, member 10	protein-coding	6.77107403952518	6.59327933820617	6.27728374566176	6.77643425600257	7.07219991196678	6.97617063270524	6.66545993109893	6.66458395380687	0.332316403740653	0.14924365646595	0.431408959697444
Merged-chr7-3665557-4	chr7	3665439	3665639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_181820)	TTS (NM_181820)	301.0	NM_027203	69757.0	Mm.389782	NM_027203	ENSMUSG00000078813	Leng1	1500001K17Rik	leukocyte receptor cluster (LRC) member 1	protein-coding	8.38356068954398	8.30219471435901	8.35874274810425	8.41134679573602	8.14973106834401	8.16960649030913	8.19768018374005	8.13400122900311	-0.259665261394525	0.0783612331208932	0.303002727744027
Merged-chr1-44042358-4	chr1	44042239	44042439	+	648.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-22333.0	NM_001013799	433294.0	Mm.123621	NM_001013799	ENSMUSG00000047343	Mettl21c	A530098C11Rik	methyltransferase like 21C	protein-coding	3.89427709839744	3.73229427247072	3.54263872691776	3.46130860322014	3.63229488005855	3.65936598577317	3.58525842890207	3.75341336809567	0.00117299209713182	0.998066444655577	0.99910121404386
Merged-chr19-44332063-4	chr19	44331974	44332174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-1252.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	5.41321213225806	5.63455025769803	5.64888589330158	6.09562818827697	5.87291100924814	5.79818556361576	5.77089799284033	6.0139500132877	0.19187280587005	0.503456979268567	0.770381746164637
Merged-chr6-24527669-4	chr6	24527586	24527786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080847)	promoter-TSS (NM_080847)	4.0	NM_001311068	68202.0	Mm.275780	NM_026614	ENSMUSG00000023089	Ndufa5	2900002J19Rik|CI-13kD-B	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5	protein-coding	7.96472799876162	7.99277473487947	7.83060124352754	8.22046513061607	7.61918758957695	7.43701916049525	8.10343216620229	7.39896829389308	-0.444753248398663	0.036821240349313	0.191119892066653
Merged-chr4-134764018-4	chr4	134763932	134764132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	3972.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	5.26907974392633	4.8145928691371	5.35793266670176	5.42124306470946	5.2494404128978	5.38190632357286	5.24389539345162	5.26633470866511	0.0693842684075483	0.824018480017197	0.932476232435989
Merged-chr15-25858728-4	chr15	25858625	25858825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 1 of 8)	intron (NM_001034851, intron 1 of 8)	15427.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	5.65679138362709	5.74752752758789	5.65777443535241	6.3135056270538	5.92482573426007	5.807553737339	5.87514065693254	5.96665865114087	-0.0121122272900255	0.966411222596827	0.988139972127125
Merged-chr13-9150143-4	chr13	9150063	9150263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 9 of 17)	intron (NM_172585, intron 9 of 17)	56282.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	6.94578040962957	7.6752890467633	7.50752616698883	6.9026941299512	6.88801037774616	6.87001322805686	6.29728926074438	6.12251171356612	-0.982216558264816	0.000642916700629861	0.00942772308078551
Merged-chr12-73201813-4	chr12	73201721	73201921	+	970.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008612, intron 6 of 7)	intron (NM_008612, intron 6 of 7)	78104.0	NM_008612	17420.0	Mm.246750	NM_008612	ENSMUSG00000021103	Mnat1	E130115E11Rik|MAT1|P36	menage a trois 1	protein-coding	4.90846870701049	4.89154375198808	5.30704244910996	5.61631123914979	4.9785079795042	4.8364347167578	5.46381125446784	5.15252475471136	-0.197815365924305	0.587141074651412	0.819073308396926
Merged-chr13-101767305-4	chr13	101767206	101767406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 1 of 15)	CpG	911.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	5.47205726177736	5.39089559222613	5.91909440729038	5.51213560367741	5.43551576039157	5.50006504649225	5.4172992973514	5.35117543765979	-0.269671921167052	0.345141333804691	0.653458042796566
Merged-chr13-74854533-4	chr13	74854443	74854643	+	923.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45783.0	NM_001301153	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	4.94233726190325	4.59046028307308	4.68628258903962	5.17407941809133	4.22836306972479	4.64645712138828	4.98309306726473	5.09562021431695	-0.210005729610162	0.606533620566717	0.829473881384844
Merged-chr6-120452604-4	chr6	120452502	120452702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10595.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	6.08021164356118	5.9377390798825	5.83620289232527	6.11548758071489	5.87207001754625	5.96299888056145	6.27103115304736	5.85639210077479	-0.012448550704416	0.960450433290489	0.985883800393479
Merged-chr9-42126882-4	chr9	42126779	42126979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2582.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	5.1451262609833	5.17192455847486	5.03825130458763	5.31440043848181	5.29715634590839	5.67620435240386	5.55148310140664	5.44730091480615	0.54654869856761	0.0624428168112072	0.264544804345272
Merged-chr8-39639160-3	chr8	39639033	39639233	+	794.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	3545.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	3.73888057558723	3.45687192867247	3.64788163208986	3.23307162651219	3.48803581168059	3.30959702400574	3.37207918526693	3.26100785992566	-0.540654521915231	0.319841750377655	0.631656381031906
Merged-chr13-51100852-7	chr13	51100733	51100933	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029463)	promoter-TSS (NR_029463)	-47.0	NM_001283028	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	4.74242608441794	4.87269083882004	4.46146925413182	4.21309135197322	5.51281914992289	5.51571154224239	5.36786159219076	5.19942887202882	1.62000567684168	2.28784430962027e-06	7.37529303054625e-05
Merged-chr15-68060866-4	chr15	68060757	68060957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	197999.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	7.46709677700843	7.46902862191752	7.40311797895677	7.43912962437201	7.38027646753545	7.03911991446964	7.04131414835261	6.91344329024001	-0.441634634463518	0.0228763093094821	0.139853372871221
Merged-chr13-9130047-4	chr13	9129954	9130154	+	872.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 3 of 17)	intron (NM_172585, intron 3 of 17)	36173.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	4.39951768121578	4.43236168378458	4.60004348313203	4.80338467904267	4.27023098977108	4.48486928201187	4.24514421021978	4.26079843186448	-0.627116571281365	0.103898825859167	0.354237415616691
Merged-chr10-67115227-4	chr10	67115121	67115321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12037.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	4.92206473268982	5.49169919310208	5.16870652739841	5.18964514904143	5.0422199556103	4.93923982240609	5.32036741181037	5.28677270574022	-0.107166005923396	0.737334393062636	0.896374281276027
Merged-chr13-105198219-2	chr13	105198123	105198323	+	889.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 5 of 7)	Lx2|LINE|L1	94791.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	2.40278625640669	2.42405968886761	2.48919518978817	2.05801727999222	2.92028073330994	2.97740411712077	3.56900465133645	3.09492643715485	5.81706768095969	2.01199394444346e-09	1.21986130299438e-07
Merged-chr12-112594042-2	chr12	112593942	112594142	+	800.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 1 of 22)	intron (NM_198411, intron 1 of 22)	5258.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	3.35082551128183	3.01773750931977	3.29424922534812	3.24860662317343	3.31793326615905	3.34710746853298	3.44372617520147	3.50641912050063	0.613091315301654	0.246007097816493	0.557199109510602
Merged-chr6-33962746-3	chr6	33962620	33962820	+	870.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 17 of 17)	intron (NM_009148, intron 17 of 17)	-66728.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	2.96583125991691	3.40780374352213	3.23241668603484	3.55067652098747	3.2544376507318	3.4035038128442	3.27925151597436	3.39994778580401	0.0490706297962783	0.931901148078039	0.975397745055384
Merged-chr2-101472927-4	chr2	101472810	101473010	+	907.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-151838.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	4.22242992359674	4.34905008697996	4.26877461990271	4.55364842372498	4.32770982656554	4.44049127018542	4.33580894772722	3.84705741835216	-0.261927852663911	0.531103913295797	0.787063468270107
Merged-chr14-31196151-3	chr14	31196045	31196245	+	887.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 3 of 13)	B2_Mm2|SINE|B2	10681.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	4.12965528476839	3.74987617955176	3.68993227555186	3.60139560810762	3.82130569304019	3.68743958608315	4.26459423624416	4.04213484728015	0.482020727526105	0.31437475403738	0.626354487695056
Merged-chr12-85123790-4	chr12	85123675	85123875	+	933.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030225, exon 10 of 15)	exon (NM_030225, exon 10 of 15)	12942.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	5.05213357481414	5.38025456440233	5.15283530888067	5.67042855540858	5.14110848168228	4.78697688502206	5.09536670902757	4.8233925549103	-0.706382751010262	0.0371866767679176	0.192345761897203
Merged-chr19-47537114-4	chr19	47537036	47537236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175360)	promoter-TSS (NM_175360)	-17.0	NM_175360	108689.0	Mm.218048	NM_175360	ENSMUSG00000042694	Stn1	0610009H20Rik|2310057J23Rik|AAF-44|AAF44|AI413458|Obfc1|RPA-32	STN1, CST complex subunit	protein-coding	7.09199043701769	7.40548095729958	6.89065962262331	6.95842234401843	7.15390945928334	7.29305198252021	7.13643066557765	6.28182547280133	-0.107210671811904	0.683650429322736	0.870394242877558
Merged-chr5-140370611-3	chr5	140370509	140370709	+	909.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	18699.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	3.84626242382222	3.74037584016593	3.8468217147475	4.02916008065762	3.87084903713541	3.56848589586774	3.62343754827895	3.79529672199777	-0.44403916000385	0.342287008309409	0.65131250740384
Merged-chr9-65546487-4	chr9	65546464	65546664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33523.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	5.92602816856074	5.3020869373955	5.50794268548103	5.2600902444692	5.48189277781983	5.30462861180748	5.63498228819833	5.70766788094544	0.0512646166981471	0.867492195217069	0.950331199983684
Merged-chr4-107253703-4	chr4	107253618	107253818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355459)	promoter-TSS (NM_001355459)	26.0	NM_001355460	72938.0	Mm.21787	NM_028394	ENSMUSG00000063172	Hspb11	2900042B11Rik|IFT25|PP25	heat shock protein family B (small), member 11	protein-coding	9.09945080317158	9.09260671946133	9.1420679744841	9.03142332650442	8.64163092331835	9.00193212390378	8.67078938781462	8.71352835165127	-0.408908663636772	0.00726714809134334	0.0625551256492596
Merged-chr16-26371883-3	chr16	26371759	26371959	+	768.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016674)	promoter-TSS (NM_016674)	-20.0	NM_016674	12737.0	Mm.289441	NM_016674	ENSMUSG00000022512	Cldn1	AI596271	claudin 1	protein-coding	3.4252834662029	3.53737397364366	3.53560891133677	3.68143368455213	3.4089598957758	3.47988644071537	3.57241103250427	3.30413309082886	-0.381774255216341	0.449126062570662	0.73430918582637
Merged-chr11-20960324-3	chr11	20960215	20960415	+	712.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129207.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	3.86211921567756	3.75482551366865	3.91051973815404	3.95853521168389	3.64366527510762	3.98334137022746	3.79724957528234	3.59081563391866	-0.356049745183019	0.438104488138933	0.726252721627489
Merged-chr6-124671119-4	chr6	124671020	124671220	+	983.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 1 of 11)	intron (NR_149320, intron 1 of 11)	8016.0	NM_145130	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	5.07691982301331	5.55179357089497	5.24380311520898	5.62756738599955	4.93527504576273	5.14541010965389	5.39079370914537	5.10927148537439	-0.479747241241032	0.134963342958869	0.408931339158154
Merged-chr2-158144478-4	chr2	158144380	158144580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 1 of 12)	intron (NM_009373, intron 1 of 12)	1912.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	6.97986295957144	7.2487905176288	7.11873344366113	7.49320041017062	7.16811856743194	7.0342138363092	7.57433866484497	6.98930221229679	-0.0304173828427031	0.892179517905238	0.959609735423941
Merged-chr11-29318888-4	chr11	29318786	29318986	+	969.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-55286.0	NM_176841	108686.0	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	5.38525041507223	5.63966775929438	5.97994690960517	5.82686961040453	5.19289989056688	5.01414133850126	5.62941583232152	5.35175780809976	-0.718148837670136	0.0199272665622346	0.127738233302862
Merged-chr1-136605511-3	chr1	136605409	136605609	+	660.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19392.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	3.73768158830921	3.96499421226485	3.53817700878006	3.38762819988576	3.1205466252034	3.20602612373192	3.46911890582022	3.53615000858525	-1.12464913487122	0.046023964360357	0.220245408199128
Merged-chr8-24541004-4	chr8	24540875	24541075	+	899.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145949, intron 7 of 9)	intron (NM_145949, intron 7 of 9)	35358.0	NM_145949	209176.0	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	3.9342364436486	4.29715744178987	4.03403922852041	3.61499860884822	3.7479819811202	4.29721104195336	4.27199187707308	3.7683816166759	0.148426701909872	0.761908642687842	0.906736252765054
Merged-chr7-121034977-1	chr7	121034877	121035077	+	1000.0	f0_balb.idr	intron (NM_021554, intron 1 of 4)	CpG	532.0	NM_021554	59052.0	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	4.80456817080349	4.69877633750853	5.11700178243977	4.78249842629859	4.94042340849238	5.28836000478334	4.61733560053501	5.28505099704657	0.39878837298085	0.257363447393089	0.569164026189719
Merged-chr3-51170419-4	chr3	51170324	51170524	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54023.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	4.0124592568892	4.57381067523677	3.95275560206049	4.65921472039513	4.63563121715926	4.54781833497963	4.73562725622309	4.61538960292225	0.616327469402049	0.15427388860576	0.439456383272923
Merged-chr13-98693620-4	chr13	98693517	98693717	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025606, intron 1 of 3)	intron (NM_001025606, intron 1 of 3)	1214.0	NM_001025606	380863.0	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	5.0522058947764	5.6842768901254	4.90588441703664	4.94677153906954	5.51936239633465	5.15844904913061	5.06249498772986	4.78041599134348	-0.0373316517379165	0.920462464432541	0.970498072867264
Merged-chr11-94629721-4	chr11	94629634	94629834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133807)	promoter-TSS (NM_133807)	-90.0	NM_133807	98238.0	Mm.172720	NM_133807	ENSMUSG00000020869	Lrrc59	AA959742|C78668	leucine rich repeat containing 59	protein-coding	6.45359760178982	6.62786201853541	6.27139616951835	6.25603633202322	6.49832642254583	6.32526754361511	6.55068327781683	6.71090932996049	0.182919261587543	0.41973138307785	0.712781243418825
Merged-chr14-62342992-5	chr14	62342979	62343179	+	919.82666	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026001, intron 1 of 10)	intron (NM_026001, intron 1 of 10)	11011.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	3.00741195063789	2.84529629727482	3.11658146247769	2.64655180485248	2.72608359319472	2.71983566715112	2.93839334351584	2.94817702319993	-0.322056593894109	0.6188021160716	0.836069984200111
Merged-chr1-37318140-3	chr1	37318043	37318243	+	953.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	18305.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	4.20699784298154	4.31290749025362	4.29268078771226	4.72173702297814	3.72784475645763	3.97921481592374	3.89706270382872	3.85424076008707	-1.48511321259485	0.000842862667204228	0.0117336440033111
Merged-chr16-95902441-4	chr16	95902378	95902578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040484, intron 1 of 3)	B4A|SINE|B4	-3765.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	4.89527472330361	5.75051565931102	5.42917698468136	4.8385272355401	5.74514879303519	5.88831106643468	5.73118531904562	5.4541561339505	0.74982457938469	0.0287574384828765	0.162945845707106
Merged-chr3-75814816-2	chr3	75814716	75814916	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	142133.0	NM_175193	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	2.56085469863312	2.70242378528515	2.62758267443817	2.53376387212684	2.46417643404705	2.7332057359161	2.68096227237448	2.68944249134007	0.187045939094673	0.77682324094896	0.913015118902433
Merged-chr1-193931549-2	chr1	193931454	193931654	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	291205.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	2.23522696390432	2.26320325851809	2.2353958190059	1.96875395187284	2.84682702500917	2.66343116073707	2.85024316870495	3.15997256800817	5.78662909273285	1.54589656634299e-09	9.60169037484535e-08
Merged-chr9-69441185-4	chr9	69441119	69441319	+	675.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12464.0	NM_007585	12306.0	Mm.238343	NM_007585	ENSMUSG00000032231	Anxa2	AW215814|Cal1h	annexin A2	protein-coding	3.55038434882336	3.21323184395917	3.55085919959717	3.81082379186419	3.64167158586395	3.60984498927835	3.53712486417333	3.79836228876753	0.273979003017728	0.600080160022546	0.826731739315186
Merged-chr1-13383705-4	chr1	13383615	13383815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-9632.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	6.28442720050778	6.60091253008818	6.20520340475613	6.26708280444124	6.75313719625497	6.7997428140474	6.39941988443574	6.26144453724997	0.337379812080194	0.163279872833453	0.452904298729887
Merged-chr11-116446156-4	chr11	116446074	116446274	+	909.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033267, intron 7 of 13)	intron (NM_001033267, intron 7 of 13)	8173.0	NM_001033267	217341.0	Mm.387352	NM_001033267	ENSMUSG00000070331	Qrich2	Gm66	glutamine rich 2	protein-coding	4.38879589391924	4.36787766458322	4.18668049139812	4.16427020592087	4.8615444368031	5.02820591969392	4.89719534225377	4.7170302665262	1.33313328127521	0.00014647026625863	0.00279806953355422
Merged-chr3-67554044-3	chr3	67553954	67554154	+	967.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28714.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	3.47877581567727	3.41828709177007	3.3399242560643	3.10286508443069	4.1287105605393	4.10320327450839	4.20392943291318	4.29566509058468	2.65830085782876	1.6607948771304e-08	8.45591692126359e-07
Merged-chr2-121309255-4	chr2	121309161	121309361	+	852.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_032393, exon 7 of 7)	3' UTR (NM_032393, exon 7 of 7)	13807.0	NM_001173506	17754.0	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding	4.11901049038783	4.22924090622052	4.34262298259967	4.07932001735233	4.06791893920669	4.42897536645552	3.94901482661833	4.41896748406664	0.0930392007465622	0.822939481821506	0.932185203682946
Merged-chr7-30373715-4	chr7	30373620	30373820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10948.0	NM_175478	233067.0	Mm.23157	NM_175478	ENSMUSG00000036957	Lrfn3	A530045B06Rik|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding	6.9564379038917	7.12123047101988	6.68834612692749	7.01678679126324	7.16911213630403	6.86594929640956	7.02018746168965	6.66769642296068	-0.011384343281442	0.957996547616133	0.985009263188766
Merged-chr15-36173981-4	chr15	36173886	36174086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023127)	promoter-TSS (NM_023127)	-24.0	NM_023127	17749.0	Mm.27375	NM_023127	ENSMUSG00000045996	Polr2k	ABC10-alpha|MafY|Mt1a|RPABC4|RPB10alpha|RPB12|RPB7.0	polymerase (RNA) II (DNA directed) polypeptide K	protein-coding	6.87316085366575	6.52476354072339	6.25563559389669	6.95787113477072	7.08573793168635	7.01042757849503	6.59294324601959	7.01872224039015	0.349210647776293	0.157197389941277	0.443661896059878
Merged-chr16-91538687-4	chr16	91538586	91538786	+	945.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8408.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	4.49047442035761	3.94357091263672	4.4478203176496	4.26123338746748	4.44804715740065	4.58061449534487	5.01164133053467	4.97739733623517	1.05249363943484	0.00878954097142364	0.0719033141943413
Merged-chr3-116126688-4	chr3	116126504	116126704	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 2 of 8)	MIR3|SINE|MIR	3084.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	4.16809355412982	4.05577594657091	4.53042193320933	4.88139213145768	4.78879455479483	4.24217348350413	4.38648668926566	4.52746637761688	0.0907217666131235	0.839520577012633	0.938943388818425
Merged-chr11-45853112-4	chr11	45853019	45853219	+	974.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045520, intron 1 of 11)	intron (NM_001045520, intron 1 of 11)	1155.0	NM_001045520	216705.0	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	5.20151261626257	4.7036837307417	4.51742224803914	4.94032552494433	4.91349018777587	4.9115706005783	4.86421111409732	5.01973602978132	0.116950224560623	0.735133721662369	0.895431262597044
Merged-chr10-128933821-3	chr10	128933751	128933951	+	880.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330160)	promoter-TSS (NM_001330160)	38.0	NM_001330160	16404.0	Mm.179747	NM_008398	ENSMUSG00000025348	Itga7	[a]7|alpha7	integrin alpha 7	protein-coding	3.25066152472557	3.17613831987423	3.14160824037914	3.23726249532887	3.08438160827177	3.06359152698015	2.94850257517976	3.02011437093699	-0.703206579856794	0.214940567808646	0.520943309804269
Merged-chr17-5935856-3	chr17	5935746	5935946	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-5434.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	3.89320465717613	3.46386566289359	4.02045907518982	3.59089829142826	3.50895106476934	3.46490413208779	3.33799987879073	3.93492231449903	-0.534354044861062	0.318555021567521	0.630414216554351
Merged-chr6-134115155-4	chr6	134115059	134115259	+	979.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	79459.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	5.04923723500524	5.02901290386159	4.86426866644935	5.327439559417	5.25518243256289	5.11844745647432	5.55051137676204	4.86109225879701	0.237952826531203	0.480232369882352	0.755780928978861
Merged-chr4-40236805-4	chr4	40236716	40236916	+	842.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172689, intron 1 of 17)	intron (NM_172689, intron 1 of 17)	3009.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	4.20912829768445	4.15466273370614	4.3371951584888	4.27510944098804	4.20915236187857	4.19146242606602	4.14625662230653	4.06569240288853	-0.227966468637559	0.56252774118959	0.805707247859895
Merged-chr3-53863907-5	chr3	53863802	53864002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026435)	promoter-TSS (NM_026435)	-95.0	NM_026435	67890.0	Mm.23067	NM_026435	ENSMUSG00000027746	Ufm1	1810045K17Rik|AI132708|AI463323|Gm10726	ubiquitin-fold modifier 1	protein-coding	6.4564591607209	6.71599615301938	6.89924534731789	6.29010487469205	6.17833280698875	6.50891577956759	6.42452415409962	6.28909431371241	-0.368113799073938	0.132798306788959	0.405806494609168
Merged-chr8-13494461-4	chr8	13494385	13494585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019521)	promoter-TSS (NM_019521)	50.0	NM_019521	14456.0	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	6.36710468994885	6.01924110915164	6.06762031985569	6.03638018763423	5.87435870926442	5.67589170960668	5.69585668852651	5.49189852898978	-0.676423196356899	0.00932081312665617	0.0750589611429189
Merged-chr19-14677182-4	chr19	14677073	14677273	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	-78990.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	5.21018994951821	5.38415542366251	6.09902139610551	4.9505533181219	5.40765899611035	5.17729642755499	5.52812050102794	4.87039486601692	-0.365659903794135	0.341895084161706	0.650871536377087
Merged-chr15-38078941-4	chr15	38078853	38079053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081359)	promoter-TSS (NM_001081359)	-99.0	NM_001081359	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	8.44882221874747	8.60521345540429	8.41894114253225	8.45532242891425	8.65128463710446	8.63824784987686	8.8834580139643	8.23838068748346	0.175993745311214	0.32419691138335	0.635755350451978
Merged-chr11-3891136-2	chr11	3891036	3891236	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026150, intron 1 of 2)	RLTR28|LTR|ERVL	3990.0	NM_026150	67430.0	Mm.347950	NM_026150	ENSMUSG00000020434	4921536K21Rik	AV043724	RIKEN cDNA 4921536K21 gene	protein-coding	2.8732162570294	2.98886109171506	2.80821949641949	2.87082417860088	2.81124841825914	3.04396290142657	3.09352336514843	2.93448581314597	0.365055419018075	0.53982467105466	0.792406302070178
Merged-chr15-103271465-2	chr15	103271365	103271565	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1423.0	NM_019817	56447.0	Mm.29473	NM_019817	ENSMUSG00000060992	Copz1	5930435A22Rik|AA407760|D4Ertd360e	coatomer protein complex, subunit zeta 1	protein-coding	2.42510469900457	2.29506254845421	2.35471350872348	2.37440817850945	2.41435295750108	2.66232796534729	2.60654758362054	2.55492185005592	1.07532690433257	0.119554708233186	0.382582591257021
Merged-chr11-32205310-4	chr11	32205174	32205374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030093)	promoter-TSS (NM_030093)	-141.0	NM_030093	78372.0	Mm.29952	NM_030093	ENSMUSG00000040767	Snrnp25	3300001G02Rik|AL033324|C16ORF33	small nuclear ribonucleoprotein 25 (U11/U12)	protein-coding	8.19355474604868	7.91370900947537	7.84489606614271	8.24685119952111	8.00188065352817	8.23561504748148	8.5136416609476	7.87759428566383	0.145521669201492	0.473813148801868	0.751365889135324
Merged-chr7-90021247-4	chr7	90021152	90021352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7907.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	5.66299910614133	6.14739481128788	6.40551942044364	6.46372038889595	6.06818764576802	6.40384527096422	6.23394892357401	6.01847906076403	-0.0516905999868432	0.850592290204763	0.943633424218446
Merged-chr2-11687674-2	chr2	11687574	11687774	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008367, intron 7 of 7)	intron (NM_008367, intron 7 of 7)	-17619.0	NM_001271498	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	3.27569077494605	2.75527324770447	3.16151146943022	2.81649599919804	3.13289566213201	3.33509926378735	3.26244638917393	3.37935654125298	1.04227779518862	0.0825251658443073	0.311935573237319
Merged-chr8-123042424-4	chr8	123042325	123042525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037865)	promoter-TSS (NR_037865)	-141.0	NM_001081379	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	8.93446882288932	9.1177882464726	9.09330581872732	8.63521977510366	9.14643963138541	9.39979650905016	8.99265465909299	8.82933847258349	0.190928633825576	0.308040110635157	0.620419629836763
Merged-chr9-31211191-3	chr9	31211091	31211291	+	977.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357698, intron 1 of 17)	CpG	657.0	NM_001357698	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	3.70212407717255	3.57109152201949	4.37203413424492	3.61637867813858	4.00861803497285	3.99053252943698	3.74485491487932	4.14222218808255	0.352163218020769	0.483231494946835	0.757703151862997
Merged-chr6-120478648-4	chr6	120478429	120478629	+	901.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 11 of 12)	MIR|SINE|MIR	15278.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	3.98958140708099	3.85727552598995	3.59030076791908	3.28781396818926	3.73161583843118	3.92738601621246	3.68733114637699	3.75289805083141	0.231352693675922	0.649833550412277	0.852959309296806
Merged-chr1-35890687-4	chr1	35890586	35890786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177714.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	6.36251908752037	6.73535537595105	7.31984361790007	7.22386115023231	6.92617908087007	6.73170515567381	7.28327143024467	6.885828829589	0.000716472269443589	0.997864290129396	0.999062742638019
Merged-chr9-20521450-4	chr9	20521354	20521554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001082485)	promoter-TSS (NM_001082485)	-35.0	NM_001082485	77519.0	Mm.431849	NM_001082485	ENSMUSG00000060510	Zfp266	5330440G10Rik|5730601F06Rik|AW552317	zinc finger protein 266	protein-coding	6.20593518744858	6.48582610171001	6.72458339918518	6.74407294712377	6.50141239691899	6.68540276294632	6.64736259042183	6.60130166174115	0.052369646476748	0.817378026338645	0.929835729412061
Merged-chr4-11602663-4	chr4	11602557	11602757	+	831.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039556, intron 8 of 14)	intron (NM_001039556, intron 8 of 14)	22995.0	NM_001256142	100503583.0	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	4.28081214867517	4.0258729904992	3.86745750393546	3.89394661459697	4.14458532936043	3.93161947030011	4.09623990587168	4.15589631226473	0.187352995586933	0.659444754401569	0.858282619421625
Merged-chr13-18782332-3	chr13	18782229	18782429	+	945.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 4 of 28)	intron (NM_172120, intron 4 of 28)	65037.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	3.97572327074649	4.17798879373542	4.1527969198394	4.24913744942803	3.42281420736767	3.71305322453874	3.75676724690771	3.82370518092149	-1.3806789923639	0.00322051868042138	0.0337290788123541
Merged-chr6-57769257-4	chr6	57769147	57769347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	55878.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	8.43026590964976	8.03234740959986	8.5381679947357	8.31157919070361	8.40194404636591	8.17174785840621	8.44188246438151	8.36396758675587	0.0159223075537636	0.927431926533967	0.973495112869021
Merged-chr4-129794127-3	chr4	129793969	129794169	+	980.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26410.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	3.74946214388081	3.95145568664539	3.57748797084743	3.49475596275947	4.35786023270848	4.07376469941826	3.78821946085419	3.99583349357227	1.11106656841589	0.0192834269168126	0.124870364311482
Merged-chr15-97784302-4	chr15	97784195	97784395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026353)	promoter-TSS (NM_026353)	-70.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	6.73487953731278	6.75916085087752	6.46895579450935	6.50580194915747	6.59964622146794	6.24019636673055	7.08642184543731	6.48170123025363	0.032666939085494	0.896434009746517	0.961123944193462
Merged-chr16-38775580-4	chr16	38775466	38775666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178924, intron 7 of 7)	intron (NM_178924, intron 7 of 7)	24637.0	NM_178924	22268.0	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	6.57186395821357	5.82385575980311	7.1528314625149	7.01210434798429	6.3955817570221	6.17613247516414	6.81081351194463	6.61548369557512	-0.311997111409488	0.328613671123386	0.640113639388399
Merged-chr5-115508920-4	chr5	115508811	115509011	+	943.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	2235.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	4.6941666530711	4.49334939625066	5.52843348849721	5.28633702356429	4.53158193436152	4.87854175074338	5.4277223976991	5.63647946455021	0.225501117870331	0.61349719699887	0.833308137450278
Merged-chr13-45031038-4	chr13	45030957	45031157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28961.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	6.03099632829248	6.10357953276279	5.58004823699299	5.9500702325303	5.73091228206816	5.72886704478898	5.66084221796572	5.736895669873	-0.358652193555606	0.168200646510739	0.460191392541484
Merged-chr5-105155778-3	chr5	105155673	105155873	+	903.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-16187.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	3.45629297376861	3.10919897395297	3.07418476455334	2.93880053229951	3.53521543333902	3.57652590534644	3.32776828096829	4.02607633593382	1.69883770476466	0.0027677226147446	0.0299990449208019
Merged-chr15-58022977-2	chr15	58022877	58023077	+	988.4166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_029418, intron 5 of 5)	intron (NM_029418, intron 5 of 5)	11317.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	3.14000216757068	3.02570338675022	3.02263356432998	2.70939252271323	3.31169467649849	3.06909249081037	3.07118600065931	2.95810850951954	0.576819346960834	0.341069602317125	0.650197428160039
Merged-chr19-43711287-4	chr19	43711219	43711419	+	958.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053103, intron 5 of 12)	intron (NM_053103, intron 5 of 12)	21630.0	NM_053103	93685.0	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	4.33680369297837	4.7870227891456	4.38637973970369	4.44314384075359	4.81585653686602	4.69860581678876	4.77217021405823	4.95564974996011	0.669338645661259	0.0595274411716141	0.257144234797305
Merged-chr17-28553244-4	chr17	28553130	28553330	+	826.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001034871)	TTS (NM_001034871)	3743.0	NM_001034871	328788.0	Mm.99400	NM_001034871	ENSMUSG00000024224	Clpsl2	Gm749	colipase-like 2	protein-coding	3.76041092275033	4.19794697105774	3.70437526548967	3.54240317957361	4.15600705264258	3.82425183115905	3.94818914205767	4.0094277015399	0.489065577135184	0.30343847815839	0.616077569651323
Merged-chr5-136953889-4	chr5	136953794	136953994	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347504, intron 1 of 3)	intron (NM_001347504, intron 1 of 3)	619.0	NM_001347504	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	4.93813516529567	5.3259026257293	4.97694511803	5.24539447646278	5.28528078780204	5.25964443241801	5.27915294359644	5.30186008507532	0.248587621380048	0.408365774422067	0.704329923147872
Merged-chr11-19998189-4	chr11	19998080	19998280	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033523, exon 2 of 6)	exon (NM_033523, exon 2 of 6)	73738.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	5.0358980171922	4.96615179918783	5.34934251480435	5.3534171337298	5.2458043876702	5.10309159546789	5.34972634233236	4.99746260780791	-0.0257261560704219	0.934567084068874	0.976356212091203
Merged-chr16-92676689-4	chr16	92676619	92676819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	20610.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.5837089415929	5.00512665526843	5.10496918477006	4.84240881497808	5.14465633358045	5.00798930264568	4.81088259022403	4.86770836554193	0.150644133346006	0.653819907471679	0.855230946668749
Merged-chr12-40681315-4	chr12	40681201	40681401	+	956.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 12 of 52)	intron (NM_172803, intron 12 of 52)	235248.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.590506271515	4.64977940557666	4.42409176069796	4.7325784347911	4.66169651616149	4.72311962667421	4.40452110307876	4.22976431866033	-0.197871728099047	0.598513658681506	0.825987886019831
Merged-chr11-103982438-4	chr11	103982315	103982515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007477, intron 4 of 4)	intron (NM_007477, intron 4 of 4)	15544.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	5.40416975654491	5.15669918782946	5.6513282667197	5.9804111364258	5.75218686680112	5.48864119362981	5.34793543182093	5.57052550661746	-0.0848371730441097	0.791466854796077	0.919123215661331
Merged-chr13-21792186-4	chr13	21792089	21792289	+	914.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	4701.0	NM_001290466	319188.0	Mm.264645	NM_178202	ENSMUSG00000069308	Hist1h2bp	-	histone cluster 1, H2bp	protein-coding	4.37207793057835	4.18939082348468	4.4141492167977	4.10339484906259	4.32165798914382	4.36707769875395	4.47188247017101	4.32727233168244	0.267572628697818	0.485961000842179	0.759723656467064
Merged-chr18-60915932-4	chr18	60915828	60916028	+	794.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038499, intron 1 of 1)	MIR|SINE|MIR	3688.0	NM_001038499	545260.0	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	3.92679338273044	3.82326515981474	4.19663414771242	4.12596768731723	4.01331943576084	3.76733024428851	3.80861826055531	4.19397245039913	-0.191731780570928	0.668736280816532	0.863209831388208
Merged-chr12-102385196-6	chr12	102385106	102385306	+	904.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 8 of 9)	intron (NM_177620, intron 8 of 9)	54607.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	3.59562273520197	3.22398509926225	3.28705304997963	3.53271352179862	3.24985275202276	3.5134676692392	3.08980642334735	2.95707516854187	-0.739260814172173	0.207583040397147	0.511583793557243
Merged-chr16-93833049-4	chr16	93832942	93833142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045529, intron 1 of 16)	PB1D11|SINE|Alu	921.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	6.33715752775341	5.91940920496495	5.77719437478322	5.66217135845992	6.27917599756151	6.31355839589313	6.08764568044148	5.92092027355067	0.354839580188881	0.190751798251794	0.490198651446474
Merged-chr2-167702315-3	chr2	167702211	167702411	+	636.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11134.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	3.14955712569978	2.64265584956766	2.77723552443717	2.93841504254095	3.01748835056826	3.08685232798469	3.02560699253837	3.20094048441649	0.796575397511105	0.199602722639175	0.501474545095065
Merged-chr9-106448709-3	chr9	106448638	106448838	+	967.6333619999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029631)	promoter-TSS (NM_029631)	98.0	NM_029631	76491.0	Mm.335427	NM_029631	ENSMUSG00000042073	Abhd14b	1810013B01Rik	abhydrolase domain containing 14b	protein-coding	3.59671697546725	3.40753632466065	3.19469295170361	3.04311684962113	3.89406048440514	4.32652000495704	3.69297480836443	4.11722669594723	2.21788711439354	2.45296573196724e-05	0.000609210215756094
Merged-chr15-98481652-4	chr15	98481546	98481746	+	864.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010679, intron 2 of 3)	intron (NM_010679, intron 2 of 3)	1037.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	4.21437808668351	4.23057772332179	4.02093142496754	4.2290177746429	4.01770871193099	4.24669390918512	4.43874316365115	4.25662603820786	0.14906015250203	0.71205745041704	0.884715833326134
Merged-chr6-88084723-7	chr6	88084616	88084816	+	941.460327	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133933, exon 1 of 10)	exon (NM_133933, exon 1 of 10)	243.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	4.86938654228974	4.47505815954191	5.15954244549994	4.42878962570001	4.75357987416683	5.04427418446126	4.94970695067984	5.12688485746572	0.44454269122047	0.233011536498113	0.542595876481147
Merged-chr1-85766233-3	chr1	85766134	85766334	+	714.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9037.0	NR_108086	77762.0	Mm.434298	NR_108086	ENSMUSG00000100217	9930111H07Rik	-	RIKEN cDNA 9930111H07 gene	ncRNA	3.66305788627779	3.63499730356424	3.79935351964485	3.58215673935619	3.05837008886638	3.39050978321621	3.26514211670676	3.2747084903597	-1.54049389069278	0.00471624210322361	0.0455059504765288
Merged-chr11-46431385-4	chr11	46431281	46431481	+	857.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5566.0	NM_001104557	66213.0	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding	4.20977279905374	4.31521270950649	3.86023279881295	3.91042403656631	4.21373803405069	3.79729664829002	4.39134099453014	4.33268840613259	0.311821925833602	0.482956251304929	0.757463266863053
Merged-chr19-55839327-3	chr19	55839244	55839444	+	700.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-55977.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.54411996035289	3.88313035088952	3.70842516124848	3.37568582331711	3.60608120038171	3.87893023872818	3.58741459906462	3.70626176257842	0.196218086774338	0.691794055168169	0.87467626526963
Merged-chr2-57108523-3	chr2	57108420	57108620	+	740.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139509, intron 7 of 7)	intron (NM_001139509, intron 7 of 7)	6518.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	4.04719994855002	3.79878247279761	3.49208924269253	3.85379266195393	3.69555644144897	3.60814635611662	3.59898525001087	3.96075792732425	-0.266445185967248	0.583590435669309	0.817221790684748
Merged-chr11-95827196-4	chr11	95827106	95827306	+	811.762512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153104, intron 1 of 2)	intron (NM_153104, intron 1 of 2)	2706.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	4.21407494783774	4.40538915576805	4.11770861727062	4.1266888635621	4.25487860237148	4.43285837440346	4.1493339178015	4.53947516547516	0.319840161230343	0.418287256181861	0.711819365667361
Merged-chr13-59821090-4	chr13	59821009	59821209	+	892.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 2 of 27)	C-rich|Low_complexity|Low_complexity	2038.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	4.80769538907772	3.94387146795786	4.1513410089881	4.40311269422516	4.3078989984082	4.17212161849052	4.48200780485828	4.42111438700916	-0.03499720728866	0.935638240690355	0.976639892179174
Merged-chr8-22889621-4	chr8	22889526	22889726	+	932.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 3 of 17)	intron (NM_001081149, intron 3 of 17)	30087.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	4.34068182285745	3.86799087360487	4.45800388303503	4.51260002324834	4.14229789207228	4.08842754780127	4.14882250653973	4.06749215736614	-0.531865423442913	0.215011029415931	0.521004727057943
Merged-chr16-13866861-4	chr16	13866760	13866960	+	949.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039533, intron 8 of 22)	intron (NM_001039533, intron 8 of 22)	36285.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	4.77906821201316	4.53645240618812	5.02106623549756	5.0066553499776	4.55377687723764	4.75233678311012	5.0270009620413	4.88561292447993	-0.0988719725461241	0.781733944910114	0.915076232419902
Merged-chr4-101367452-4	chr4	101367373	101367573	+	812.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040640, intron 2 of 3)	intron (NR_040640, intron 2 of 3)	-11225.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	3.81064599805168	3.97262418075306	3.91583495102417	3.74780989681011	4.13636163317857	4.22591177373655	3.94858543479714	3.96300523554029	0.602750712825511	0.156563697958904	0.442522632609967
Merged-chr1-180794356-4	chr1	180794294	180794494	+	815.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	19211.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	3.74763015815545	4.24991104828233	3.85561797544038	3.52806195683717	3.73803970225272	3.92524016751888	3.67680892570797	4.28597587787573	0.159949530094964	0.751789057392579	0.902294431953731
Merged-chr6-131022417-1	chr6	131022317	131022517	+	556.0	f0_balb.idr	Intergenic	Intergenic	224945.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	3.19728194484202	3.30526201948103	3.54198527269904	3.06582555885102	3.0131957576086	2.8359703951366	2.7989125081112	3.13826474727126	-1.34954496393072	0.0337134892371822	0.18097228132831
Merged-chr5-92332624-4	chr5	92332550	92332750	+	994.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 1 of 10)	intron (NM_001310664, intron 1 of 10)	823.0	NM_001310664	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	4.30413720522493	4.58238749810276	4.55901101311805	3.99401805186801	4.74968410072436	4.61099322373605	4.33139852553453	4.30214943683408	0.3461673461619	0.40248330638098	0.699952582884796
Merged-chr1-36939823-4	chr1	36939706	36939906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018872)	promoter-TSS (NM_018872)	-279.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	6.95834075324036	7.23396385679689	7.30380664151511	6.61914514696384	6.84449467842114	7.21055785104322	6.39388915446542	6.99238707932549	-0.217900666993086	0.400257072248581	0.698147846003575
Merged-chr11-107011846-4	chr11	107011745	107011945	+	860.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-12320.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	4.34249528026011	4.19081282888943	3.92356239422556	3.88853689780324	4.60178997181584	4.1539094364805	3.85253586832791	4.17071664954023	0.35855905153705	0.431378919789168	0.721675024613162
Merged-chr15-27724409-11	chr15	27724316	27724516	+	923.242432	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42874.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	3.47439036933425	3.49893020586752	3.6867712106487	3.71707755651625	3.39044422982746	3.53010439681649	3.46196037425834	3.73237899899345	-0.243767244721947	0.624497441596344	0.839476183554346
Merged-chr2-148568089-4	chr2	148567985	148568185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0-int|LTR|ERVL-MaLR	-104530.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	6.70072633320117	6.70592298137115	7.13791103417264	7.58049248389461	6.45131937646623	6.40485564595301	6.79802302789802	6.8687355303563	-0.636663242323163	0.0195000137170151	0.12580363240854
Merged-chr5-139781629-3	chr5	139781496	139781696	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5918.0	NM_026748	68510.0	Mm.292942	NM_026748	ENSMUSG00000029547	Ints1	1110015K06Rik	integrator complex subunit 1	protein-coding	6.12436748613955	5.87387093089083	6.15702865457914	6.44825037438069	3.62440255202323	3.99415878161117	3.90914965597805	4.13898091690147	-6.15729634783185	7.8693639148885e-19	2.28625899631775e-16
Merged-chr3-67568438-4	chr3	67568337	67568537	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14331.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	5.00292843853446	4.9794743801736	4.93440966282182	5.20751257544418	4.66900880863212	4.79220158760777	5.1656594498521	5.03363974891575	-0.246155939555315	0.460709670053016	0.74271114721283
Merged-chr3-109255185-4	chr3	109255075	109255275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85508.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	7.85532284138019	7.61608629165358	7.84910490837604	7.87069781200321	8.09025169330994	8.09277792916569	8.04406880576367	8.02609526016676	0.33656108689399	0.036986252193039	0.191646243346315
Merged-chr2-24962414-4	chr2	24962325	24962525	+	997.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355558)	promoter-TSS (NM_001355558)	3.0	NM_026044	67228.0	Mm.389248	NM_026044	ENSMUSG00000026975	Dph7	2810443J12Rik|AW060693|Wdr85	diphthamine biosynethesis 7	protein-coding	4.9091299019313	5.20715470124191	4.6684231636957	4.97840005647767	4.82131110790756	5.04807024113423	5.02433546507635	5.31131120432276	0.18513219346722	0.582103668439626	0.816501953640427
Merged-chr10-118869845-4	chr10	118869718	118869918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014390)	promoter-TSS (NM_001014390)	-915.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	7.94961903584327	7.92402800452134	7.92263555727335	8.08823256084455	7.88116435640778	7.81186845025463	8.2149046783154	7.90291991451872	-0.0207347961391269	0.90439775084233	0.964559678221358
Merged-chr10-128338644-4	chr10	128338541	128338741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026444, intron 1 of 10)	intron (NM_026444, intron 1 of 10)	914.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	4.65903880200625	4.79508297985028	4.07304172558287	4.39992290160765	4.7739738951444	4.7935970050972	4.11188132465253	4.17962531718008	0.000576491234802869	0.998970397142842	0.999515665343703
Merged-chr11-22859740-4	chr11	22859636	22859836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016888)	promoter-TSS (NM_016888)	-1.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	7.44415026072284	7.69699598020494	7.31569741646156	7.10850379815018	7.38418030441665	7.68696512046759	7.35051622025256	7.15409529294338	0.00457646527708541	0.983051256417435	0.993940447455246
Merged-chr15-98994099-4	chr15	98994006	98994206	+	946.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8141.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	4.49677282242651	4.82671512926585	3.79133006215348	4.55845359539946	4.80404416365557	4.71224387929295	4.73996411031487	4.31402027749295	0.401027439643559	0.377716460993517	0.680403906895215
Merged-chr2-90582486-1	chr2	90582386	90582586	+	595.0	f0_c57.idr	Intergenic	Intergenic	-1839.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.13827240789281	3.78056588193178	3.32935308698753	2.89894354871579	3.5706980350926	3.3836537795211	3.4811877368042	3.32758301904499	0.392255915457789	0.514339866281616	0.776966017760127
Merged-chr4-150009098-4	chr4	150008993	150009193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173371)	promoter-TSS (NM_173371)	-70.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	7.45211573637087	7.40702728320009	6.93059000726913	7.24342382029908	7.19126173906509	7.23885716570779	7.38897182164606	6.85478876237319	-0.123610440687697	0.563229196918213	0.806187480040249
Merged-chr9-21515526-4	chr9	21515417	21515617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5283.0	NR_136911	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	6.44798215372143	6.65141970921734	6.00786661122551	6.06401943067751	6.47705979756305	6.31404319467108	6.08613331437179	5.98081875682963	-0.120729677750064	0.655787784410278	0.85629437016692
Merged-chr1-161500527-4	chr1	161500421	161500621	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183391, intron 2 of 2)	intron (NM_183391, intron 2 of 2)	5864.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	4.76484041967849	4.48755558538528	4.83376839734277	4.54944723403002	4.97077198196946	4.62497427038714	4.2386492601575	4.30467061014218	-0.164480826857341	0.683874458575351	0.870484622441612
Merged-chr7-111429701-2	chr7	111429601	111429801	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-307026.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	2.89613349404695	3.05852448707025	2.83025941143731	2.69321408069589	3.09126912197926	3.06897296833173	2.94892097978865	3.07541416234439	0.775781261083399	0.193231332746019	0.493470616874602
Merged-chr10-4126572-4	chr10	4126457	4126657	+	966.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 26 of 27)	intron (NM_001170785, intron 26 of 27)	86563.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	5.18868439276831	4.72328174960222	4.76959708167396	5.31173193982412	4.28915289060157	4.94447871111172	4.82060113739745	4.36709299831245	-0.836872009343676	0.0348173996180853	0.184697249024869
Merged-chr18-46334292-4	chr18	46334184	46334384	+	914.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22356.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	4.71503557624661	4.47458371126485	4.34281517619049	4.85357615889057	4.67268885813245	4.65361468273703	4.11919737563662	4.74803388010895	-0.111074967086198	0.781437914146328	0.91489521170836
Merged-chr3-135608353-4	chr3	135608254	135608454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 12 of 24)	intron (NM_008689, intron 12 of 24)	83193.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	6.94688727409459	6.94182489177561	7.19950781347862	7.20039576403622	6.87189679841102	6.72735462383182	6.59933589682416	6.4167149650158	-0.575576157365259	0.00705121990069557	0.0611867878054765
Merged-chr2-112268055-4	chr2	112267921	112268121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133649, intron 1 of 24)	intron (NM_133649, intron 1 of 24)	1707.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	6.01443789700363	6.02814392433215	6.076984311838	6.48893520297592	5.79325136530658	5.6546035391886	5.50874962213979	5.85498668100932	-0.754228838742467	0.00504988680990328	0.0478686766869231
Merged-chr19-12574319-4	chr19	12574191	12574391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026640, intron 1 of 3)	intron (NM_026640, intron 1 of 3)	766.0	NM_026640	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	5.42195192221674	5.71153750497055	5.75374087005838	5.58232148689602	5.98886244310323	5.87895225236479	5.74842436652089	5.72517220253763	0.370658193992153	0.152316066509436	0.436288782778331
Merged-chr12-38778319-4	chr12	38778252	38778452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1730.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	6.93820355586778	7.3873962955734	6.85780294616486	6.59515465368617	7.42182576034712	7.34407245366433	6.80887300058838	6.71974210554134	0.196939218943003	0.458709746839587	0.741485810075879
Merged-chr17-34557143-4	chr17	34557016	34557216	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-7179.0	NM_010929	18132.0	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	5.25314537497269	5.14013616119201	5.1002147559785	5.28958063021896	5.07637776163387	4.98520508219721	4.97414314201389	4.95881494220358	-0.384530246383318	0.203284452807805	0.506071071153005
Merged-chr9-87171254-4	chr9	87171156	87171356	+	887.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101482, intron 2 of 3)	intron (NM_001101482, intron 2 of 3)	22028.0	NM_001359955	244958.0	Mm.335337	NM_001101482	ENSMUSG00000042761	Mrap2	BB633055	melanocortin 2 receptor accessory protein 2	protein-coding	4.02678786961083	4.0320525704273	3.97814089486976	4.16564674810682	4.25370087950933	3.75447593644474	4.14604174025833	4.1179718680077	0.0778579256182792	0.856259262541443	0.945878451904049
Merged-chr10-7232983-4	chr10	7232889	7233089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20752.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	6.42216966217706	6.39437579077352	6.78149211136316	6.9581323767418	6.28541982945551	6.36537413445852	6.89908215244723	6.52235901971647	-0.196827903418008	0.444721163029866	0.731044175244865
Merged-chr6-17066109-3	chr6	17065997	17066197	+	839.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207176, intron 1 of 6)	intron (NM_207176, intron 1 of 6)	948.0	NM_207176	21753.0	Mm.436548	NM_011570	ENSMUSG00000029552	Tes	D6Ertd352e|TESS|Tes1|Tes2|testin2	testis derived transcript	protein-coding	3.99986506135831	4.03895644546834	3.4871772675284	3.84015196521984	3.82136529886312	3.66509386338718	3.59392459597151	3.54685756586511	-0.57347056689759	0.244675410523299	0.555808536831526
Merged-chr11-23007767-4	chr11	23007651	23007851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5636.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	7.23398440464494	7.17701708046009	7.20260543714044	7.49364259150067	7.28125792168145	6.82190112139632	7.20968585824762	6.96858066123749	-0.273041288166621	0.185529056939843	0.483497702336656
Merged-chr12-76377954-4	chr12	76377856	76378056	+	965.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	7690.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	5.05576075133894	4.79595693110117	4.98855864316796	4.81610470269347	5.10015602224324	4.7647711824665	4.89305340097917	5.66804937611002	0.470539982980961	0.189606387053666	0.488560419348859
Merged-chr9-45829330-4	chr9	45829244	45829444	+	837.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081373)	promoter-TSS (NM_001081373)	-706.0	NM_001081373	214552.0	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding	4.31716179350403	3.93098141352366	3.82208932673215	3.94729324498654	4.55359208259741	4.48766454964827	3.97490588037152	4.27323334764032	0.833801954613516	0.0540255307722908	0.242661868635862
Merged-chr2-165288663-3	chr2	165288581	165288781	+	759.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252574)	promoter-TSS (NM_001252574)	-843.0	NR_045544	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	3.52546973684347	3.38257482500963	3.07794650781314	3.29342860592851	3.16478617944863	3.25383344885333	3.30850682884877	3.2037540086475	-0.357830823660308	0.512752911248915	0.776017039843318
Merged-chr10-127288508-3	chr10	127288395	127288595	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347171, intron 1 of 12)	intron (NM_001347171, intron 1 of 12)	523.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	5.4452342846458	5.78905888188041	5.80115623465692	5.68946915838714	5.77673982465111	5.71502793079401	5.79507998403215	6.25107068619304	0.342538989542269	0.209048459861255	0.513442418925301
Merged-chr12-17676642-4	chr12	17676545	17676745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14164.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	5.38860658561978	5.14237241678434	5.63559090996121	5.73709932206692	5.60404460948164	5.37294889718803	5.55672378641634	5.63160088423087	0.0649861249414437	0.825943321558155	0.933190575949898
Merged-chr19-47936582-4	chr19	47936499	47936699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3G|LINE|L1	-1113.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	5.44152370120319	5.19069868935207	5.1998715352591	5.46072579206005	5.38413449399663	5.30836398270832	5.41521734061237	5.56945757007169	0.145980555692329	0.609428134387907	0.831005463172353
Merged-chr8-105326350-4	chr8	105326261	105326461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177449)	promoter-TSS (NM_177449)	-3.0	NM_025486	66320.0	Mm.29990	NM_025486	ENSMUSG00000014856	Tmem208	1700006C06Rik|2610030K20Rik|Hspc171	transmembrane protein 208	protein-coding	7.63777288210471	7.72020726342659	7.24942396800034	7.40840981611377	7.60962182872716	7.82449540736602	7.39321402567309	7.61698872062481	0.136338573663313	0.486712807751999	0.760359360985358
Merged-chr14-9390340-4	chr14	9390246	9390446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-493749.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	7.2503089914768	6.69691426860739	7.27203297388178	7.32638487162852	6.86418739719873	6.83333648393078	7.09667680622362	7.00858758635391	-0.290048277556774	0.187717950196797	0.486108305395706
Merged-chr7-119921220-4	chr7	119921110	119921310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21099.0	NR_126475	73919.0	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	5.30278093051781	5.33183872490441	5.78467071135151	5.39958703443879	5.66909996870395	5.65979687647798	5.61519699347655	5.45278465763082	0.244773928986662	0.383101480254421	0.684990335427401
Merged-chr1-172563211-4	chr1	172563171	172563371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027644, exon 6 of 6)	non-coding (NR_027644, exon 6 of 6)	3365.0	NR_027644	240916.0	Mm.71940	NM_177723	ENSMUSG00000049598	Vsig8	A030011M19|EG240916	V-set and immunoglobulin domain containing 8	protein-coding	5.0092505469942	5.19923937944219	4.97406998038279	5.12527336006677	5.0043178362397	5.34883299109152	5.02075462745574	5.29155674691633	0.152193703191377	0.621454438870566	0.837822329002936
Merged-chr2-160645843-4	chr2	160645736	160645936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009408)	promoter-TSS (NM_009408)	-61.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	8.85847883974255	9.14798889403626	8.92947349934424	8.66793316815716	9.14555588853616	9.37746385401291	9.11563671149678	9.10229671490999	0.346922116198189	0.0368565708340765	0.191224860077173
Merged-chr8-26689353-4	chr8	26689253	26689453	+	859.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135070.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	4.37013314050507	4.48990325044688	4.32346808183611	4.4513423716096	4.43797252318273	4.67652809766775	4.84166205938818	4.72986455296391	0.568810469061032	0.116560890980386	0.377705893612533
Merged-chr7-46788552-4	chr7	46788464	46788664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005247, intron 4 of 22)	intron (NM_001005247, intron 4 of 22)	7317.0	NM_001005248	246694.0	Mm.379442	NM_178742	ENSMUSG00000014418	Hps5	AI646796|AL022647|C85120|haze|hz|maroon|mr|ru-2|ru2	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	protein-coding	4.11746310696134	4.08010920799993	3.90797263797338	4.53295632419383	4.55550258750559	3.77964910272901	4.14764678831015	4.49069036728434	0.219547088571664	0.648057308258408	0.851973023337718
Merged-chr17-31295282-4	chr17	31295197	31295397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153062)	promoter-TSS (NM_153062)	-186.0	NM_153062	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	5.8625579452926	5.91291740837868	5.76672470620692	5.60953882169152	6.04451862069165	5.81179551589863	5.85669741943863	6.16760397152941	0.324261781304835	0.201643626476449	0.50415510516587
Merged-chr9-45608269-3	chr9	45608168	45608368	+	779.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-177036.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	2.70653813449651	2.638024008242	2.7067925084226	2.46148761548574	3.60795626907599	3.04587238092813	3.59507521971938	3.28838541205691	3.67481755725042	4.39186419449996e-08	2.04052546671223e-06
Merged-chr10-76350032-3	chr10	76349927	76350127	+	656.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-4736.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	3.15844578280212	2.83141727508591	2.91347229430455	3.24060874115918	2.87095794217021	3.08833083167706	3.30167222538756	3.10009898254092	0.16459545318118	0.788843713983623	0.918193420999835
Merged-chr4-134930807-4	chr4	134930693	134930893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026780)	promoter-TSS (NM_026780)	-187.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	7.87761403172092	8.20507684970481	7.63953707433725	7.53222152123428	8.00322741004383	8.07084048001686	7.70317878917833	7.66899222161644	0.0499789156863598	0.814924454051942	0.92862301029334
Merged-chr13-49225802-4	chr13	49225687	49225887	+	945.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9761.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	4.29275399209167	4.74521448746243	4.67964204898079	4.62950571795068	4.38675526170853	4.69558099434166	4.86012742615073	4.29084185124001	-0.0616360579647746	0.87319278649366	0.952435247820927
Merged-chr4-59803603-4	chr4	59803492	59803692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2058.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	6.41903815965742	6.70876572331664	6.64706616994018	6.78560064845528	6.4051760861791	6.34364580628801	6.52131951355849	6.28479098760722	-0.387707090390474	0.0746620396463018	0.294653123165345
Merged-chr11-111089068-3	chr11	111088972	111089172	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22908.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	4.15028849549563	4.29370081972566	4.33583113427285	2.9848442475162	6.24833134683932	5.88222797779284	5.67351618438946	5.80267553713181	3.72283074593566	2.08080133689508e-08	1.04009380869982e-06
Merged-chr5-3505730-4	chr5	3505619	3505819	+	986.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-38114.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	4.95149522819343	5.00686389395741	4.77117085687818	4.90400663185865	4.68757274808237	4.9454431733888	4.92835324210187	4.80635209237374	-0.150964326939422	0.642222274331147	0.849047906103579
Merged-chr9-102793100-3	chr9	102793051	102793251	+	841.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41769.0	NM_013649	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	3.649847941423	3.19422885446447	3.26464835575842	3.61319022954286	2.88392147661407	2.90507246165182	3.07306047134174	3.01578094345625	-1.99935650404472	0.00146420723231453	0.0183004050200027
Merged-chr2-6455310-4	chr2	6455188	6455388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102552.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	5.0656433491442	5.03889383633199	4.99724723761434	5.33274066324457	5.13805161077083	4.61530546257279	5.16889849270937	5.41335189816612	-0.0188160437975458	0.956104278475697	0.984485749961977
Merged-chr9-60991721-4	chr9	60991635	60991835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25334.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	7.35854149693642	7.26355456412286	7.0815897149839	7.12962625395895	6.92465066987294	6.90191579209488	7.2744139796904	6.95073016880706	-0.25884181755488	0.191572433513043	0.490975870844874
Merged-chr9-66882593-4	chr9	66882517	66882717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	37088.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	6.10983297408448	6.0377377334598	6.88469374779494	6.69773551404352	5.75219323204834	5.84550429761823	6.01527831904386	6.1065253999384	-0.848948894720152	0.00321120362845774	0.0336578210970392
Merged-chr8-84823863-3	chr8	84823764	84823964	+	867.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033145, intron 1 of 1)	intron (NR_033145, intron 1 of 1)	-1041.0	NM_201227	23863.0	Mm.304252	NM_201227	ENSMUSG00000053226	Dand5	Cerl-2|Cerl2|Cerr2|Dte|GREM3|coco	DAN domain family member 5, BMP antagonist	protein-coding	3.48435635746421	3.62164953025114	3.17366463144719	3.42130528363221	3.4706244413322	3.54291838575165	3.6256543708507	3.63905098696023	0.434989576412938	0.390435102157226	0.690570939884669
Merged-chr12-91776481-4	chr12	91776402	91776602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	9934.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	5.60423486116958	5.93190573711682	6.28116869308641	6.3036481967708	5.99822580771149	5.81401599732709	6.10184779085134	6.14834138477443	-0.0808792492747108	0.767658864573284	0.909065338836771
Merged-chr6-140767108-3	chr6	140766986	140767186	+	850.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140201.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	3.98061764291054	3.86387297160203	3.77846173611202	4.07125569920371	3.76626274566006	4.103646416566	4.05338759979534	3.7204760724752	-0.0601580763286928	0.893845589656775	0.960450328240811
Merged-chr11-48834478-4	chr11	48834386	48834586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053166, intron 1 of 6)	tRNA-Ala-GCG|tRNA|tRNA	-2985.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	6.11601466640508	6.14156772360132	5.96911561685857	5.70030180902429	6.37601256352431	6.07647521349864	5.74645493281677	6.13248797154613	0.206220643973898	0.444021220457867	0.730462472425057
Merged-chr1-191327666-4	chr1	191327579	191327779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025864, intron 1 of 7)	intron (NM_025864, intron 1 of 7)	1714.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	6.03614568361072	5.44152018703914	5.90670173884704	6.05114361758293	6.23418613540951	5.5907957493808	6.29790650924125	5.8793783382218	0.241956253355399	0.412254022412535	0.707438199120081
Merged-chr15-57913000-4	chr15	57912920	57913120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356310, intron 1 of 19)	intron (NM_001356310, intron 1 of 19)	821.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	6.22877706462925	5.55300206515147	5.61443866251451	6.11370961362482	7.38642864714379	7.27414324533453	7.50097189219447	7.14470596548556	2.0109492053408	2.48906905173944e-15	4.25888091427311e-13
Merged-chr1-193897022-4	chr1	193896901	193897101	+	911.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	325758.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	5.05912993716126	4.67534989155285	4.74035985269259	4.84018730257368	4.75466233745915	4.99325470648434	4.79580247617737	5.28493736259391	0.266054788778723	0.438787062375809	0.726732530107543
Merged-chr3-81039542-4	chr3	81039437	81039637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	3121.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	5.31192293695695	5.06774186945161	4.75225425836716	5.25039749934978	5.42129081071646	5.16782141314504	5.22876190287865	5.05947990768523	0.207401379572241	0.517470951569146	0.778892868568594
Merged-chr7-134697685-4	chr7	134697573	134697773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033420, intron 1 of 51)	intron (NM_001033420, intron 1 of 51)	26986.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	6.73986585691416	6.5719773887684	7.13112462824307	6.87089970847367	6.48253998405469	6.03459530568307	6.33978039479483	6.12258887032164	-0.836947965650733	0.00054464600733564	0.00826608871398058
Merged-chr1-89235558-1	chr1	89235458	89235658	+	836.5	f0_balb.idr	Intergenic	Intergenic	165143.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	4.27881137171423	3.9043056845319	3.96867478624198	4.19619742578304	4.1633944598916	3.98483631268048	3.84893471809202	4.01564489727025	-0.227238186179849	0.598741264329761	0.826053129391413
Merged-chr14-64185585-3	chr14	64185488	64185688	+	815.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 4 of 4)	intron (NM_001253715, intron 4 of 4)	81265.0	NM_028525	73382.0	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	3.79060024359854	3.46220551340754	3.48426168672424	3.70834087724335	3.49240327950815	3.47730199256057	3.35205756226797	3.83334282898822	-0.229607468136701	0.653035065648276	0.854895588497363
Merged-chr11-97533256-4	chr11	97533153	97533353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 10 of 19)	intron (NM_018873, intron 10 of 19)	-32913.0	NM_001289118	100141474.0	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	6.09228028125136	6.00930542426221	5.70494444963797	5.93051505526024	6.27678432751333	5.9590958206161	5.50612739183557	5.87536443907198	0.00717964962196148	0.979537898017949	0.99269129061727
Merged-chr6-108564225-3	chr6	108564127	108564327	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58940.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	3.55723386393408	3.42132008417902	3.55772726506176	2.45240771570993	5.53365892047617	5.64001071051763	5.78397077798721	5.62726970415929	9.38071041862881	5.2062621175873e-24	2.91792544305312e-21
Merged-chr4-155774595-4	chr4	155774512	155774712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_147776)	promoter-TSS (NM_147776)	-51.0	NM_147776	246228.0	Mm.26515	NM_147776	ENSMUSG00000042116	Vwa1	4932416A11Rik|WARP	von Willebrand factor A domain containing 1	protein-coding	5.43779473111962	5.38551315192461	5.0745461629021	5.67544085928948	5.68635881193846	5.61332460575346	5.64585305933392	5.37599600412382	0.270505431946153	0.362440790851266	0.667648124413267
Merged-chr3-57696440-4	chr3	57696335	57696535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3898.0	NM_001033349	242037.0	Mm.291091	NM_001033349	ENSMUSG00000074591	Ankub1	Gm410	ankrin repeat and ubiquitin domain containing 1	protein-coding	5.44886811301476	5.36532435246675	5.13878748792754	5.53296719810308	5.578226621921	5.16976227074017	5.33759830084367	5.52605171015345	0.0533675454391174	0.856329167985182	0.945896954453316
Merged-chr8-105544035-4	chr8	105543984	105544184	+	782.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	21980.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	3.62185632571778	3.56386798083978	3.35105378731658	3.42897778298138	3.53733306615384	3.26734260177441	3.33924093489049	3.66808771921411	-0.0869006013673557	0.866326948040812	0.949895290173807
Merged-chr13-111467486-4	chr13	111467380	111467580	+	827.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028487, intron 2 of 12)	intron (NM_028487, intron 2 of 12)	22647.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	4.08284702394762	4.4526912700215	4.23184819310614	4.17244635629783	4.79941487900224	4.31095304034555	4.38615164005972	4.02775543808563	0.437025016905926	0.304315190335764	0.616977638512856
Merged-chr16-24670100-7	chr16	24669999	24670199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 6 of 12)	intron (NM_178665, intron 6 of 12)	-51756.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	5.18761448721261	5.40429771085958	5.67349985673144	4.84977086152064	5.41238405301193	5.42734320507534	5.02561332182542	5.24892017251185	-0.0134738514267671	0.968377153685641	0.988694268692349
Merged-chr8-70863325-4	chr8	70863170	70863370	+	817.354187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6262.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	3.29248389472319	3.46999625571051	3.56931927011153	3.02165347427251	3.61530558662555	3.58244670813704	3.45154515160169	3.16239060747282	0.4144276375532	0.460624265200495	0.742687499720882
Merged-chr15-80235464-3	chr15	80235317	80235517	+	712.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357659, intron 2 of 6)	intron (NM_001357659, intron 2 of 6)	1337.0	NM_178719	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	3.58200815570175	3.73271215376629	3.43053076070756	3.46770956823222	3.06680258812613	3.09760449419505	2.97930353813989	3.4285713125051	-1.52186795230715	0.00917179610118644	0.0741707555497904
Merged-chr4-63410210-4	chr4	63410094	63410294	+	997.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6749.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	4.91562645300287	5.67297996447685	4.95304452364715	4.53349766021697	4.76570232221455	5.19817690013402	5.09633198780726	4.94968109365064	-0.15011349071777	0.706072162551106	0.881879743016467
Merged-chr4-141669289-4	chr4	141669195	141669395	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	-5180.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	4.49566432651148	4.43206726231731	3.79929462246737	4.60084277664936	4.02334486338275	4.10769292479549	4.39634632831987	4.73737813594857	-0.0634005530125268	0.892948318950293	0.95997777333237
Merged-chr3-15231788-3	chr3	15231688	15231888	+	889.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100514.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	4.05723763201168	4.0150031325358	4.35293553417726	4.70658472348754	3.86039377829277	3.73093935795924	3.53143681902363	4.00710856440456	-1.43235788479424	0.00375875968152616	0.0381389530108839
Merged-chr17-50513041-4	chr17	50512938	50513138	+	890.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	3491.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	4.2240904346825	4.29424911240278	3.83051410727062	4.26631490540017	4.9497221436342	4.6989052126129	4.34381887081466	4.4039798854126	1.04746656332459	0.0125299060135675	0.0925940801640076
Merged-chr7-111122271-4	chr7	111122191	111122391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015573, intron 1 of 2)	CpG	384.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	6.21498087553951	5.98924670876638	6.74420678899446	6.09702342878909	5.89241161028937	5.62162580422362	5.95959346219299	6.19269528704428	-0.547708568555914	0.0546595967796992	0.244137656563039
Merged-chr5-65089818-4	chr5	65089739	65089939	+	639.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17729.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	3.14995283930475	3.40944935116807	3.21527809323422	3.37729709210756	3.4144869863389	3.44954090840346	3.6269389082146	3.33469095398557	0.551725926077776	0.292460593109842	0.60479380959004
Merged-chr8-60890368-4	chr8	60890254	60890454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357270)	promoter-TSS (NM_001357270)	-39.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	8.86939130022274	8.98871001822043	8.89745091474811	9.14535766280009	8.76392884469791	8.69962235048539	9.00304744542079	8.69231906781566	-0.235031587940842	0.136470689290602	0.410990361962696
Merged-chr17-25861475-4	chr17	25861346	25861546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163766)	promoter-TSS (NM_001163766)	69.0	NM_001163766	106618.0	Mm.35470	NM_134124	ENSMUSG00000073434	Wdr90	3230401M21Rik|AI551153|mKIAA1924	WD repeat domain 90	protein-coding	7.03037203579993	7.04089914657713	6.59674844643647	6.71497313452952	7.04410595672159	7.46194583848799	7.04398598658613	7.22971945627277	0.47699180288083	0.0274266943601741	0.157881494368203
Merged-chr11-98789029-4	chr11	98788916	98789116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6500.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	7.40049088263422	7.74749023924674	7.27857999923818	7.25724718277354	7.37068191718867	7.49811805206005	7.29488053542632	7.13695042204163	-0.136744873773581	0.50055584811121	0.768850577358824
Merged-chr5-64769473-4	chr5	64769372	64769572	+	909.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34051.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	4.21572890040695	4.12861495438315	4.06841682432243	4.65594583992389	4.60127233650605	4.43400614910373	4.19807821128109	3.95756680086018	0.0492873391490795	0.913005259206574	0.96737778834115
Merged-chr10-80663770-4	chr10	80663672	80663872	+	943.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6701.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	4.94430772916944	5.82378431671988	4.86670709763789	5.02305912824056	5.27541630569531	5.58942313591806	4.71779311153076	4.90322867753202	-0.116986609830261	0.772827086177618	0.911052408089747
Merged-chr17-26933119-4	chr17	26933020	26933220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302397)	promoter-TSS (NM_001302397)	-7.0	NM_001302397	21652.0	Mm.258953	NM_009343	ENSMUSG00000024193	Phf1	AW557215|D17Ertd455e|Pcl1|Phf2|Tctex3	PHD finger protein 1	protein-coding	6.71982532786233	7.29270733252022	7.26917271883574	6.58654835159354	6.77330516661133	6.97229900048582	6.59202451447308	6.93948172502904	-0.240715771972053	0.334132726466135	0.644805241742718
Merged-chr14-31458703-4	chr14	31458588	31458788	+	935.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22588.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	4.75404999275628	4.81370486643287	4.62784452311846	5.35296444797654	4.62158609225313	4.80711042338367	5.16816034962599	5.2187641070809	0.0632137921317641	0.87061830468485	0.951430072143722
Merged-chr8-71707955-3	chr8	71707863	71708063	+	879.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028715)	TTS (NM_028715)	-6163.0	NM_028189	72297.0	Mm.290837	NM_028189	ENSMUSG00000031803	B3gnt3	2210008L19Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding	3.62748582312848	3.87248974568993	3.51205616193594	3.4049161791192	4.08975008038792	3.68870885243275	3.76843676520652	3.62599633717056	0.620398325427331	0.210024983296566	0.514484230514723
Merged-chr19-10820314-4	chr19	10820193	10820393	+	947.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009852, intron 1 of 12)	L1MC4|LINE|L1	9765.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	4.44513097705465	4.44260215764708	4.44582256848409	4.35402074595227	4.4886612909778	4.57626616051274	4.54833416699992	4.81524241947267	0.432781205521775	0.226423910558943	0.535042066048626
Merged-chr4-56757904-3	chr4	56757800	56758000	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026079, intron 34 of 36)	URR1B|DNA|hAT-Charlie	14478.0	NM_009611	11470.0	Mm.30959	NM_009611	ENSMUSG00000070979	Actl7a	Tact2	actin-like 7a	protein-coding	3.64788369077914	3.51337903149104	3.56816753965597	3.16097986362996	5.66262379893545	5.01826021829015	5.51137975820447	5.27126886544381	4.87717081482553	1.04431646749601e-22	4.89035538420387e-20
Merged-chr15-59393984-4	chr15	59393878	59394078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	19780.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	6.44980459720697	6.53617990654164	6.48387814261375	6.74486625978998	5.79364700359175	6.36977592934747	6.41785938205389	6.01292884959323	-0.608410726184297	0.0155308247681327	0.107525394044443
Merged-chr7-101540892-4	chr7	101540791	101540991	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14911.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	5.3116701612417	5.21572617890955	4.91630801946071	5.44475809051401	4.93005039226942	5.13110576957838	4.96763463079878	5.33688141343585	-0.291733986676562	0.365751715331999	0.670406513516905
Merged-chr6-134087842-3	chr6	134087751	134087951	+	833.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	52151.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	4.06845053840672	3.80999404390978	4.59833389975782	4.42294855763219	3.40009949999257	3.28431210184914	3.38663187559554	3.71643752118314	-2.49806919317528	1.0480069192091e-05	0.000287350094385149
Merged-chr2-58931997-3	chr2	58931900	58932100	+	757.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	176816.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	3.59891071902944	3.42322572125367	3.86007728942715	3.90735674338879	3.65555414374439	3.93235066769996	3.93316770756781	3.59749148697497	0.18711950408969	0.705209619504838	0.881592530590025
Merged-chr9-47435406-3	chr9	47435318	47435518	+	749.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94752.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	2.85433791505904	2.90963252820465	2.91426100701269	3.08937473142951	2.53638275494652	2.61062195393386	2.78298046791982	2.91271285948871	-1.13111427823418	0.0920913083360175	0.331880271178644
Merged-chr15-79063035-4	chr15	79062948	79063148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144849)	promoter-TSS (NM_144849)	-189.0	NM_144849	223690.0	Mm.24262	NM_144849	ENSMUSG00000033055	Ankrd54	C730048E16Rik|EST1068184|EST475269|Liar	ankyrin repeat domain 54	protein-coding	8.85445148928748	9.10344654835424	8.63234551343728	8.84919825115645	8.95438301339181	9.20652880358347	8.99503375785779	8.95582554508002	0.196641371477328	0.229156424699343	0.538019103264656
Merged-chr6-50060130-4	chr6	50060030	50060230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-50111.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	5.54047068194312	6.15099336376833	5.79061841919365	6.12214237621879	6.20514512965153	5.59514134014113	6.30151830349231	5.81141111310785	0.126664803734576	0.67004364670067	0.863816502363743
Merged-chr5-104000056-2	chr5	103999956	104000156	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053262, intron 5 of 6)	AT_rich|Low_complexity|Low_complexity	21740.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	3.13884061627018	3.13864715147777	3.00947736744692	3.02841248154972	3.03258717713544	3.31290766485029	3.35130801795533	3.51017357688514	0.871274302906473	0.118133316223988	0.380170508884494
Merged-chr9-40782195-4	chr9	40782076	40782276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 6 of 6)	intron (NM_133733, intron 6 of 6)	-19097.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	6.81549390740258	6.6331870578062	6.63937561837372	6.64375104893623	6.81841170021383	6.73482096062201	7.07435286001901	6.86576021086889	0.280177965931262	0.164694465280813	0.454900556624874
Merged-chr7-24905136-4	chr7	24905057	24905257	+	856.854126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130152, intron 1 of 28)	intron (NM_001130152, intron 1 of 28)	811.0	NM_001130152	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	4.23538336564568	3.89094594429495	4.40041625765545	4.002758802923	4.21503863529006	4.27135168958486	4.45350245936248	3.8835004620689	0.212545003673944	0.624560841343136	0.839545553066231
Merged-chr13-9895251-4	chr13	9895137	9895337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 4 of 4)	intron (NM_033269, intron 4 of 4)	-129916.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	5.54323947001325	5.48478572491126	5.84849134895466	5.96839032106494	5.71153323446055	5.5060926883832	5.84086188385696	5.93126335488353	0.0248479801101743	0.929486384058708	0.974513777866012
Merged-chr4-59581587-4	chr4	59581476	59581676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024255)	promoter-TSS (NM_024255)	13.0	NM_024255	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	8.12374848643486	8.10738584404894	7.85296089986805	8.08231257373214	8.16507312054718	8.30272295644411	8.4049572033376	8.11340758526319	0.257023969385453	0.119797518153543	0.383135673285903
Merged-chr9-66917614-4	chr9	66917513	66917713	+	888.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	2092.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	4.55162277223287	5.15298656900955	4.98397124724241	4.04521397847711	5.00867322561114	4.84972100075253	4.39761776655925	4.03611328604086	-0.256601261861875	0.600982326091304	0.827051492743764
Merged-chr9-118705231-2	chr9	118705128	118705328	+	866.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-6464.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.29737848964097	2.4318813324623	2.4447800875371	2.34008509284867	2.35188832120601	2.80726804597087	2.56771654138833	2.63762965744558	1.17859954262913	0.094978443417299	0.337196875888081
Merged-chr5-92505663-4	chr5	92505552	92505752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007644)	promoter-TSS (NM_007644)	5.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	8.63477246523715	8.79369270238279	8.81633202472033	8.5500499645874	8.92419665749511	9.02206142457833	9.06059149029703	8.81077948976571	0.321637281489093	0.0357951013437249	0.187950687411109
Merged-chr8-95713786-4	chr8	95713683	95713883	+	808.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001195006, exon 15 of 15)	3' UTR (NM_001195006, exon 15 of 15)	-2130.0	NM_001035123	66083.0	Mm.261321	NM_001035123	ENSMUSG00000031671	Setd6	0610039J04Rik|3110004G14Rik|AI413388|C76402	SET domain containing 6	protein-coding	3.71463644168759	4.0998493627884	3.71510318861635	3.9326651865657	4.29317775171507	4.20280164799868	3.96783816416915	4.03012421673882	0.668315659263718	0.128925510587955	0.399459753542857
Merged-chr3-53017128-4	chr3	53017036	53017236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026225)	promoter-TSS (NM_026225)	87.0	NM_026225	67542.0	Mm.249548	NM_026225	ENSMUSG00000027742	Cog6	4933405E16Rik|AU018618|mKIAA1134	component of oligomeric golgi complex 6	protein-coding	6.62105742538736	6.89953399156954	7.63919648850465	7.09911543573347	6.65304758706695	6.83288496131472	6.69840839605975	6.61749451212359	-0.584718257904967	0.0222962910087707	0.137679161769176
Merged-chr19-41802059-4	chr19	41801922	41802122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163495)	promoter-TSS (NM_001163495)	62.0	NM_001163495	71085.0	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	7.64951220189189	7.64025405931111	7.67548802008567	7.73237665127459	7.41744004244892	7.65930488040759	7.40658360114838	7.38825396618888	-0.276555318999884	0.106635590736031	0.360051212976317
Merged-chr9-21357535-3	chr9	21357442	21357642	+	857.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10329.0	NM_001042708	16201.0	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	3.7780008939487	3.9572755776699	3.5131718760664	3.11578293523863	3.71442925180927	3.74541087125111	3.61106649316924	3.51130371298251	0.071529513832515	0.896615486898866	0.961205400053835
Merged-chr13-46521726-1	chr13	46521626	46521826	+	950.0	f0_balb.idr	intron (NM_026056, intron 1 of 12)	L1MA5|LINE|L1	19823.0	NM_026056	67252.0	Mm.44529	NM_026056	ENSMUSG00000021373	Cap2	2810452G09Rik|AV045235	CAP, adenylate cyclase-associated protein, 2 (yeast)	protein-coding	3.44324336424718	2.97701079912996	3.25147156537604	3.48017995002544	2.77141147914467	2.69639402830113	2.88533109786637	2.823085876311	-2.36419029887869	0.000657563037226159	0.00959899085863839
Merged-chr17-86677551-4	chr17	86677431	86677631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-76333.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	5.75586774390605	5.54378473106107	6.10684006225308	5.87004449078381	5.1203763477358	5.31188940641201	5.24346058872029	4.70032678807679	-1.26756185152529	5.75076797594666e-05	0.0012759785341643
Merged-chr12-21543417-4	chr12	21543317	21543517	+	900.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-125981.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	5.93690370098228	5.70354569947101	6.35048663552687	6.0111413730386	4.74525843064752	4.65790228987873	4.9709799832132	5.03192250772779	-2.08962426476591	7.5579522447395e-11	5.89589790810701e-09
Merged-chr2-84660470-4	chr2	84660381	84660581	+	921.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145100, intron 2 of 4)	intron (NM_001145100, intron 2 of 4)	1402.0	NM_001145100	100270744.0	Mm.393636	NM_001145100	ENSMUSG00000086598	Btbd18	Btbd18-ps|Gm13718	BTB (POZ) domain containing 18	protein-coding	4.18180018399191	4.32983807892879	3.69780440015537	4.38412506449595	4.24956991506264	4.16343791010471	4.2500092214754	3.9862754369335	-0.0460283462157082	0.918031424642341	0.969796661202263
Merged-chr11-80176914-3	chr11	80176816	80177016	+	946.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 9 of 10)	intron (NM_172133, intron 9 of 10)	-6956.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	4.44205073460641	4.1039702929034	4.15782088673559	4.07516260941182	3.61591350299144	4.28445984190556	4.13928370026214	4.10882772768512	-0.378447245134753	0.404510450995398	0.701621244783961
Merged-chr6-70871678-4	chr6	70871567	70871767	+	967.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010121, intron 2 of 16)	intron (NM_010121, intron 2 of 16)	27152.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	4.42015779222621	4.57602145949806	4.69235767783413	4.65417576176202	4.50662544251999	4.36262422254675	4.06063012565819	4.50164891778476	-0.496668672834667	0.194952707144107	0.495696890112538
Merged-chr4-119978051-4	chr4	119977967	119978167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	163389.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	7.48717690930497	7.55471716609596	7.56178055846878	7.38721181682758	7.62119385179097	7.66566660139731	7.6749033192383	7.52047352894127	0.170221009706536	0.314337710212733	0.626354487695056
Merged-chr15-62120976-3	chr15	62120869	62121069	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	81712.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	3.47487027442637	3.40595025888882	3.95157297520543	3.73590678313953	3.62435450232267	3.26154385723993	3.46239247812331	3.58401040090519	-0.531428020436814	0.316784622879633	0.628743667727529
Merged-chr3-106684963-4	chr3	106684874	106685074	+	984.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039478)	promoter-TSS (NM_001039478)	-13.0	NM_001039478	321000.0	Mm.259638	NM_028081	ENSMUSG00000056260	Lrif1	2010012G17Rik|4933421E11Rik|AI450568	ligand dependent nuclear receptor interacting factor 1	protein-coding	5.74372507053896	5.47191378673242	4.76879993364262	5.51313077077155	5.53377324467258	5.17378591541832	6.01503433102635	5.6461811028089	0.347302195734679	0.327331021074277	0.638881023372017
Merged-chr7-101822039-2	chr7	101821939	101822139	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001122739)	TTS (NM_001122739)	3726.0	NM_008887	11859.0	Mm.5028	NM_008887	ENSMUSG00000007946	Phox2a	Arix|Phox2|Pmx2|Pmx2a|Px2a	paired-like homeobox 2a	protein-coding	3.31532282854967	3.09639113845156	3.51930209166186	3.11742526114538	3.25501635779065	3.24794150186803	3.12720914312456	3.46979410494478	0.0599902629591698	0.914341984871734	0.967950384482346
Merged-chr6-136449445-4	chr6	136449301	136449501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33832.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	7.5699192605093	6.92689528146913	6.92521129090679	7.23270646650212	6.88486045948704	6.73262767290103	7.20732404784216	6.93365402698139	-0.330906474147269	0.15246561400254	0.436626430862475
Merged-chr15-79694655-4	chr15	79694568	79694768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013818, intron 2 of 11)	intron (NM_013818, intron 2 of 11)	3772.0	NM_013818	14904.0	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	4.93088845923674	5.14288853140685	4.48689581363047	3.83705797153161	5.74354135714672	5.41057719248519	5.61193665881701	5.20063175698063	1.53617132159903	0.000303732252827179	0.0051267152060673
Merged-chr11-51584154-2	chr11	51584054	51584254	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028398)	promoter-TSS (NM_028398)	-603.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	4.53791916104837	4.73172520782287	5.05272968997141	4.15831510271027	4.7102130951942	5.06429672703184	4.83340568573822	4.98735974846308	0.531057972859968	0.175004728351573	0.469690492792
Merged-chr2-125792763-6	chr2	125792702	125792902	+	839.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9932.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	2.9735414608216	3.11999055489312	3.04302915490009	3.11884642085578	3.42552455593795	3.45803269367425	3.27587655061502	3.4445481455754	1.22625633792137	0.0234377656122916	0.14210193513776
Merged-chr10-60349220-4	chr10	60349115	60349315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	2364.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	7.46836108467868	7.08032901231918	7.84913856409541	7.91459707562654	6.88618693229313	6.83882666114622	7.10409994193156	6.75316120801547	-0.97973675048743	3.87277174520505e-05	0.000905287422173893
Merged-chr7-92885639-4	chr7	92885529	92885729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	LTR48B|LTR|ERV1	10376.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	6.50819222666359	6.39142994462972	6.65038812558708	6.69221544425893	6.77616330986132	6.48948242878005	6.20037952384678	6.48800614091715	-0.0813211259767638	0.726877833198741	0.891273682846738
Merged-chr8-61387823-3	chr8	61387717	61387917	+	832.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021506, intron 11 of 11)	intron (NM_021506, intron 11 of 11)	-98945.0	NR_045475	69279.0	Mm.417857	NR_045475	ENSMUSG00000099419	1700001D01Rik	-	RIKEN cDNA 1700001D01 gene	ncRNA	3.57229503309264	3.63069558175948	3.30059776590152	3.65580060155199	3.21809653381293	2.98590764447361	3.347360409203	3.52077741128829	-0.950348690306178	0.0949706716843982	0.337196875888081
Merged-chr9-70843605-3	chr9	70843520	70843720	+	853.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	B4A|SINE|B4	91188.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	2.94577575745537	3.17372673718867	3.35579694379155	2.77502172836732	3.01015185894417	3.12445319221966	3.18291314300774	3.30263917311899	0.329360996191518	0.586259976708338	0.81856236198936
Merged-chr3-95230831-4	chr3	95230732	95230932	+	994.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038708, intron 1 of 4)	intron (NM_001038708, intron 1 of 4)	1889.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	5.5759590051325	5.2910144802647	5.76925964831451	5.31684769682308	5.36073997909907	5.67110985835167	5.82520380804302	5.10848286973586	0.0420809079908863	0.893796679912776	0.960425625813491
Merged-chr16-78237946-4	chr16	78237848	78238048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17506.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	5.49822224108766	5.69531187679679	5.89120094844337	5.91872972893136	5.93247916622101	5.79305411950428	5.92646433031668	6.01499559605285	0.235206660817943	0.361027651215205	0.666310244142585
Merged-chr8-84642144-3	chr8	84642049	84642249	+	862.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	20703.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	3.21620061980307	3.92261595528889	3.76261488412681	3.34560785960582	3.81895625527667	3.93324437369742	3.84101306997523	3.48489144286774	0.568388821864122	0.293577892673009	0.606049780774289
Merged-chr6-117921495-4	chr6	117921386	117921586	+	902.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166429, intron 3 of 3)	MER20|DNA|hAT-Charlie	4192.0	NM_001166427	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	3.87243180756359	3.86156339631409	3.50999013042535	3.94330317982188	4.30484788682272	4.32577136933314	3.90861264625058	4.11171547229653	0.950893920315751	0.0371533498640956	0.192287798137592
Merged-chr9-35060091-4	chr9	35060019	35060219	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	MTEa|LTR|ERVL-MaLR	-56609.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	4.87540206903857	4.88399948785577	4.33613665428874	4.80890003115135	5.08095131182118	4.65971304936793	4.74754539831447	4.47930947517441	0.0508611969995226	0.893242139920368	0.960089656965393
Merged-chr3-15285107-4	chr3	15285060	15285260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47142.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	7.44122890240658	7.53566862048507	7.2451022451477	7.66883991028739	7.19387681437638	7.32958742774517	7.8247603964938	7.3983181386209	-0.045459614021633	0.830880388555876	0.935098427995742
Merged-chr12-100501439-4	chr12	100501342	100501542	+	897.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 1 of 19)	intron (NM_001033213, intron 1 of 19)	19380.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	4.63065168947361	4.35832716014031	4.77191582782011	4.87607238641974	4.27121841960238	3.96244259147112	4.41043084291635	4.62832813839144	-0.774035083373574	0.0595388838737098	0.257170836534182
Merged-chr17-50121231-5	chr17	50121075	50121275	+	875.6966550000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	69322.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	3.56421036771009	3.75306937126032	3.44395106881315	3.60814080112497	3.67963958291328	3.79354290727784	3.94088870915647	3.72506376096221	0.561187845806418	0.230748591194453	0.540242548931978
Merged-chr1-135722294-4	chr1	135722181	135722381	+	922.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360782, intron 1 of 5)	B4A|SINE|B4	2218.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	3.9111388033984	4.3585030995147	3.91165301971148	4.02037115369184	4.89976488893716	4.45185923197404	4.50371785557575	4.40452549695632	1.24032185995168	0.00269950716312742	0.0294164452486599
Merged-chr16-43379500-2	chr16	43379400	43379600	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	L1_Mus3|LINE|L1	40696.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	3.44552924104193	3.58280588038927	3.3896728064474	3.33652180710384	3.43498665307303	3.38098596006277	3.43269636200103	3.54956723246063	0.0491549012796338	0.921948758994857	0.971037318883215
Merged-chr12-100725260-4	chr12	100725164	100725364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330702)	promoter-TSS (NM_001330702)	-144.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	9.68598745912585	9.71051159195538	9.74793046047392	9.6322236680343	9.50409860471521	9.68705130486704	9.63336389576198	9.48277514154709	-0.141071291339852	0.292715358791461	0.605111132766537
Merged-chr6-50110134-4	chr6	50110025	50110225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164734)	promoter-TSS (NM_001164734)	-116.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	6.32349878939342	6.25627511121264	6.15275814217446	6.25987015191857	6.37588586447714	6.20063328872633	6.29226061990994	6.04179586461023	-0.0137222932092643	0.951663275508257	0.9827990291829
Merged-chr15-8681282-3	chr15	8681164	8681364	+	933.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 3 of 9)	intron (NM_148938, intron 3 of 9)	29543.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	4.23400768178211	3.64203016963985	3.66307282347532	4.14284026505223	4.1280523688547	3.78161223097525	3.96343171509495	3.77565504403296	-0.0771246663171395	0.87432560896097	0.952841261958902
Merged-chr3-101012265-3	chr3	101012184	101012384	+	910.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167906, intron 5 of 8)	intron (NM_001167906, intron 5 of 8)	17211.0	NM_001167906	630146.0	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	3.83905787508265	3.97488504886155	3.93853579146236	3.43907764915309	3.93552611138994	3.79576031695463	3.66158004815784	4.23142828751652	0.339094451504474	0.489392830977944	0.76169179992188
Merged-chr17-43590044-3	chr17	43589968	43590168	+	733.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045444, exon 1 of 3)	non-coding (NR_045444, exon 1 of 3)	1441.0	NR_045445	73504.0	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	2.93716402653365	2.87672594782678	2.88054484431208	2.79545559513992	2.62795393184767	2.65360775178773	2.81072407697886	2.69131725633684	-0.849066811289072	0.185165209602532	0.482979743219862
Merged-chr6-110041629-3	chr6	110041537	110041737	+	947.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-603875.0	NM_001346640	108073.0	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	4.04099359173462	4.16519912682177	4.34990413473021	4.39774766319781	4.06800721466413	4.05918699870834	4.29086171323033	3.88222305189647	-0.44514407363931	0.290247669479826	0.602406731765695
Merged-chr12-116283117-4	chr12	116283023	116283223	+	738.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028731, intron 1 of 21)	intron (NM_028731, intron 1 of 21)	1901.0	NM_028731	52635.0	Mm.273755	NM_028731	ENSMUSG00000021171	Esyt2	2410017M09Rik|4921504I16Rik|CHR2SYT|D12Ertd551e|Fam62b	extended synaptotagmin-like protein 2	protein-coding	3.63117677856146	3.58761499470253	3.26787397740455	3.55555602818985	3.90157600168419	3.57736413800638	3.81066150177791	3.68146714612421	0.720289776526803	0.140531185579981	0.416907817213249
Merged-chr7-45525482-4	chr7	45525434	45525634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148927)	promoter-TSS (NM_148927)	734.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	6.22038441942755	7.0113997108826	6.26476469757335	6.3223955122254	7.0676671285281	7.22524872759075	7.05835964628385	6.88598953846028	0.795706800711121	0.00161923362171511	0.019837423401043
Merged-chr11-98203698-3	chr11	98203634	98203834	+	996.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001109626, exon 1 of 14)	exon (NM_001109626, exon 1 of 14)	429.0	NM_001109626	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	4.54998917213904	4.59043024120793	4.12169705012409	4.66826650139267	4.88903900344782	4.7624929655332	4.15986268623685	4.66402212950212	0.314464440671585	0.443510039385277	0.729977364228012
Merged-chr7-42490584-2	chr7	42490484	42490684	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001309388, intron 2 of 6)	intron (NM_001309388, intron 2 of 6)	15169.0	NM_001309389	434178.0	Mm.333810	NM_001309388	ENSMUSG00000092416	Zfp141	-	zinc finger protein 141	protein-coding	3.75960000444238	3.71754944081326	3.91780150053503	4.4968999096527	3.62511745124718	3.33766495233309	3.99522500641369	4.29682312926101	-0.416411719232214	0.479281381783917	0.755018800327493
Merged-chr7-101383932-4	chr7	101383827	101384027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	-1599.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	7.663326080085	8.06438807855197	7.46323809103272	7.66276970683503	7.63717590201007	7.68955547868306	7.73991777725486	7.90418564139285	0.0134480647410176	0.944907504767655	0.980188164476105
Merged-chr14-103343415-4	chr14	103343262	103343462	+	711.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207215, intron 1 of 84)	intron (NM_207215, intron 1 of 84)	3438.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	3.61736470955869	3.02722787184527	3.24646460608552	3.14667244869335	3.38809589989203	3.35997769972098	3.40502175379224	3.46969316803126	0.482994732504229	0.378617686783146	0.681182628403749
Merged-chr11-46035289-3	chr11	46035195	46035395	+	959.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER119|DNA|hAT-Charlie	-19207.0	NM_001291890	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	2.83257964232095	2.90458647492913	2.8328358124546	2.63678258503506	3.83781692541882	3.82956633367393	3.48888404344215	3.94882667421522	4.03746722600116	3.25760464423712e-10	2.30490100369934e-08
Merged-chr1-173630790-4	chr1	173630690	173630890	+	913.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175026)	promoter-TSS (NM_175026)	-69.0	NM_175026	236312.0	Mm.447	NM_175026	ENSMUSG00000043263	Ifi209	4930422C14|AI447904|Ifix|Pyhin-1|Pyhin1	interferon activated gene 209	protein-coding	4.5500355009636	4.58341480601196	4.50447859602413	4.10285478122926	5.55596167707033	4.97496184342302	5.04381033482233	4.97115399365447	1.52865278125632	3.04584575121771e-05	0.000736664134304878
Merged-chr5-120511152-4	chr5	120511065	120511265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133221)	promoter-TSS (NM_133221)	-27.0	NM_001177595	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	8.17135630126697	8.46764777050313	7.87905193082764	8.02519842087057	8.37900725712766	8.31965964519774	8.52653049836195	7.76111324760476	0.158577986566807	0.464005648355872	0.74519118175878
Merged-chr1-131702612-3	chr1	131702467	131702667	+	730.799988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311096, intron 4 of 4)	intron (NM_001311096, intron 4 of 4)	13872.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	3.22738288564122	3.53304471718887	3.36978165342642	3.55130868052116	3.85522424370244	4.08566760853067	3.80781036791139	4.04206877840522	1.53167527022286	0.0023529899482027	0.0265089381961254
Merged-chr3-67576454-4	chr3	67576339	67576539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6329.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	6.83252427539656	6.96284136337558	6.67546614088701	6.94344473464952	6.69974527340191	7.17370830179221	6.38874336893875	6.27873364150858	-0.256049330886723	0.313617566495476	0.625522943764707
Merged-chr1-156469445-3	chr1	156469343	156469543	+	828.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	4885.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	3.40807377472811	3.29858626122528	3.66252864946691	3.22039230240721	3.77563489472841	4.00333540055051	4.37455669485187	4.29212356692685	2.18635764656701	1.08400836303006e-05	0.00029612364920838
Merged-chr2-32450504-4	chr2	32450397	32450597	+	905.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194335)	promoter-TSS (NM_194335)	40.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	4.33434713665839	4.31697639779397	4.42495189871756	4.46882494608161	4.33877273383371	4.4163210665666	4.67497135396334	4.85809708223151	0.428011440779434	0.25901055764566	0.570794998659786
Merged-chr17-23804875-4	chr17	23804651	23804851	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175229, intron 1 of 13)	intron (NM_175229, intron 1 of 13)	1564.0	NM_175229	75956.0	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	3.3655608717934	3.48001571132139	4.03649666331134	3.46810029602127	3.84846278491233	3.67216182121089	3.54042544700177	3.99311550070413	0.50423827233585	0.331725251993158	0.642821952146076
Merged-chr7-43465557-4	chr7	43465461	43465661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290316, intron 4 of 9)	intron (NM_001290316, intron 4 of 9)	2328.0	NM_001290316	75690.0	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	7.82456739422512	7.85740557105707	7.98876739126435	7.8194334075813	7.78987847588731	7.79837343947173	7.97665938562572	7.60666864938926	-0.0933382353676919	0.582359277458877	0.816519074787564
Merged-chr4-99062203-4	chr4	99062098	99062298	+	717.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026082, intron 11 of 47)	L1MB8|LINE|L1	31244.0	NM_013913	30924.0	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	3.64499062379978	3.750136001269	3.99851517921727	3.49651488985605	3.88260126133132	3.98049282862551	3.79284649951471	3.90475888056063	0.495414203198177	0.284311331653333	0.596222858869618
Merged-chr11-44390191-4	chr11	44390101	44390301	+	991.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9862.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	5.54858487000664	6.49335721831395	5.95189226315503	5.39105699272901	5.73094488532682	6.28732831915874	5.78560649852907	5.35542918698526	-0.141094540439606	0.695409182616805	0.87660540152023
Merged-chr6-113752453-4	chr6	113752348	113752548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 19 of 19)	intron (NM_001036684, intron 19 of 19)	-11767.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	6.01522811844358	6.28020109130158	5.8119127007298	6.11420691145856	6.00580737984114	5.55817509478946	5.70676931128481	5.94753147206732	-0.389202753848446	0.140894893005057	0.417494563733161
Merged-chr2-93459482-4	chr2	93459404	93459604	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	2347.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	5.18191194321446	5.80855831060798	5.46606321288306	4.73335542443303	5.64884559684867	4.91635226148569	4.87660507935641	4.43114346481912	-0.54869866311203	0.218302822946186	0.525502270434798
Merged-chr3-81926071-4	chr3	81925972	81926172	+	961.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6529.0	NM_177662	229445.0	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	4.18378617948774	4.23538160122816	3.76216277507034	4.41273026776042	4.27248492771295	4.39844188042003	3.8661380924171	4.1360050139503	0.00309621637434021	0.994545103171803	0.998078671009147
Merged-chr10-99203393-4	chr10	99203287	99203487	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59844.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	5.23788851225305	5.26833780621688	5.04720202577837	5.04222794613704	5.04005285109483	5.11520071078704	4.98842109395208	5.26432518292986	-0.0821153428780181	0.787257187183767	0.917465745172984
Merged-chr13-44420027-4	chr13	44419941	44420141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19686.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	5.32655817566893	5.80874144409226	5.48346285272134	5.64120859178959	5.62424457728373	5.89745206339835	5.64543971671503	5.81327823427755	0.261482288822597	0.338692660816163	0.648111538678755
Merged-chr16-94602778-3	chr16	94602681	94602881	+	942.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-8638.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	3.82986787916324	3.58917711503859	3.83044705783538	3.93446570083227	3.33270852904608	3.35652115965972	3.81369795303956	3.87451693907405	-0.582152003407512	0.262904761273968	0.574735947525663
Merged-chr5-137510295-4	chr5	137510187	137510387	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CGG)n|Simple_repeat|Simple_repeat	-7858.0	NM_028753	74097.0	Mm.290242	NM_028753	ENSMUSG00000029715	Pop7	0610037N12Rik|AI852017|Rpp20	processing of precursor 7, ribonuclease P family, (S. cerevisiae)	protein-coding	5.18902442021768	5.45537311715865	5.42301174380856	4.85063006185045	5.40972803139285	5.29949724871623	5.03066230435026	5.05164180518155	-0.0403670627707837	0.903401823992853	0.964283398515218
Merged-chr1-151601548-4	chr1	151601449	151601649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	30176.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	7.38294540903178	8.06143034319058	7.32300014648762	6.9854842900819	7.4246597851125	7.52132283938682	7.63830545134716	6.71254738339209	-0.171986487562849	0.548019718091547	0.797185375508272
Merged-chr3-65958256-4	chr3	65958149	65958349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355432)	promoter-TSS (NM_001355432)	0.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	8.2138897247748	8.61562989245856	8.29693048589235	8.20545607468991	8.32219464083282	8.44608127993604	8.46048243410579	8.28583709218738	0.046471048247674	0.78408036885338	0.91594470512568
Merged-chr11-106354281-3	chr11	106354174	106354374	+	818.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4884.0	NM_133199	110880.0	Mm.432528	NM_133199	ENSMUSG00000001027	Scn4a	Nav1.4|SkM1|mH2	sodium channel, voltage-gated, type IV, alpha	protein-coding	3.82613272147687	3.85872120086169	4.06761905990674	4.00705301476284	3.50109560879592	3.94778323834522	4.04924937520577	4.02043346273099	-0.158507944443878	0.734138996113245	0.894843475654919
Merged-chr1-180246382-4	chr1	180246277	180246477	+	990.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011183)	promoter-TSS (NM_011183)	-427.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	4.97907032067063	5.19300488328106	5.31045536064716	5.61065854054657	4.65411231592753	5.33083254228961	5.4205667792014	5.18470759794135	-0.25290981185082	0.476530861469877	0.753071552469824
Merged-chr9-118599932-4	chr9	118599820	118600020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-6789.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.14352997422342	5.76061670248257	5.84978997457071	5.78097106084761	5.95719541839279	5.67643769151505	6.01611783702317	6.04274605122427	0.0829305655719984	0.745947458193055	0.899850054545454
Merged-chr13-101760462-4	chr13	101760366	101760566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	7751.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	5.69346543549789	5.63250537543713	5.48748134719652	5.62303531327085	5.60128835884854	5.48337271971007	5.28059354212679	5.45524761175136	-0.249272463582904	0.357954695827201	0.664030682676162
Merged-chr16-94223247-5	chr16	94223170	94223370	+	965.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 6 of 10)	intron (NM_001360045, intron 6 of 10)	67021.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	4.70867881997299	5.03909229282992	4.83150675048735	5.20513143548933	4.83800228671559	5.04463401968739	5.14496307004636	5.1061722362041	0.0990122056600484	0.767805198904968	0.909178124683614
Merged-chr10-20839104-4	chr10	20839004	20839204	+	928.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113443.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	4.96499443165088	4.83501030475189	5.4545390993607	5.67921566049341	4.63904517878576	4.59255881546221	4.6716512701497	4.89032692913124	-1.16830184448852	0.00183314228460219	0.0218598148225329
Merged-chr7-27673737-5	chr7	27673647	27673847	+	887.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198417)	promoter-TSS (NM_198417)	834.0	NM_001290528	269881.0	Mm.389883	NM_001081292	ENSMUSG00000040390	Map3k10	BC028668|BC046514|MST|Mlk2	mitogen-activated protein kinase kinase kinase 10	protein-coding	4.89270385944036	5.08009100748063	4.51050603439025	4.74238989779968	4.95288486902613	4.54931707238199	4.39897929472362	4.5076921930427	-0.394585778347097	0.303100125689528	0.615636452643959
Merged-chr2-155249742-2	chr2	155249641	155249841	+	660.5	f0_balb.idr|f1_balb.idr	intron (NR_111890, intron 3 of 3)	intron (NR_111890, intron 3 of 3)	13133.0	NM_001291108	67068.0	Mm.23693	NM_025947	ENSMUSG00000047459	Dynlrb1	2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1	dynein light chain roadblock-type 1	protein-coding	3.08190912478466	3.11906553097913	3.24590335080728	3.51365874417145	2.85419255100449	2.7816452638788	2.88600806156013	2.82480830545844	-1.89251698884351	0.00368458608685331	0.0375361604517149
Merged-chr1-172370235-3	chr1	172370174	172370374	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039484, exon 2 of 2)	3' UTR (NM_001039484, exon 2 of 2)	-6257.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	4.74218242294908	4.76857059727582	4.92703779681933	4.83724309938585	3.88282840506039	4.01025190748645	3.73701410488965	4.05845053461415	-2.26547564568233	8.85630757032617e-08	3.82282059762429e-06
Merged-chr17-28987886-2	chr17	28987780	28987980	+	867.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357173, intron 5 of 13)	B2_Mm2|SINE|B2	20115.0	NM_134115	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	3.32605896143371	3.24103562053058	3.10181593201365	2.87042764861596	3.30787737690647	3.21288991685178	3.0288468422011	3.03756372041581	0.0744808381934949	0.89935978337322	0.962548928270847
Merged-chr1-37430102-4	chr1	37429970	37430170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356528)	promoter-TSS (NM_001356528)	33.0	NM_198006	76178.0	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	7.91623851897946	8.16293152460121	8.14014771807808	8.11462443853711	8.17224149977664	8.31156366817525	8.20214958441177	8.00467822846837	0.111290415483386	0.494205459315169	0.764918030542628
Merged-chr16-30390757-4	chr16	30390661	30390861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2231.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	5.81921633507926	5.24800740927419	5.35777812384556	5.31763391463557	5.96725171982303	5.37176917736814	5.42031454882188	5.55431869297802	0.289581099624413	0.355133652444333	0.661783396816865
Merged-chr4-141957931-4	chr4	141957815	141958015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 9 of 31)	intron (NM_177868, intron 9 of 31)	-25077.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	5.34158203980877	5.38565691826889	5.34249570427142	5.32166711629418	5.5694950913566	5.91993085273241	5.57216248598385	5.89499580836823	0.67553025327727	0.0131777058747518	0.0958389625481717
Merged-chr17-31072156-2	chr17	31072046	31072246	+	779.0	f0_balb.idr|f1_balb.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	14452.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	3.0553777935784	2.84084523077305	3.31000835237954	3.16915306390028	2.6935595578733	2.84527233563178	2.86503669973968	2.66392719518412	-1.57056763880662	0.0177406745730528	0.118026308574196
Merged-chr9-120012902-4	chr9	120012753	120012953	+	794.99585	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011724)	TTS (NM_011724)	10745.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	3.17831222535397	3.06836603382083	2.84638214457454	3.03282607938269	3.21103032347228	3.45907964995729	3.32988028377315	3.17704886703453	0.990906062541004	0.0774620322565391	0.301046682718438
Merged-chr17-8165740-4	chr17	8165644	8165844	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201230, intron 1 of 11)	CpG	226.0	NM_201230	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	5.22875396390922	5.19200033445358	5.39656309215426	4.87195242145079	5.03109476978837	4.98923829155842	4.94216010090412	5.19593142959381	-0.238113679754877	0.46169132758509	0.743466969960164
Merged-chr3-107785443-4	chr3	107785351	107785551	+	836.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24982.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	3.84582033778334	3.74457571451704	3.79480455021985	3.79127294039918	4.19085080863995	3.86003513818979	3.92662043045021	3.73907696221332	0.446390263465795	0.317509017178904	0.629455613128821
Merged-chr3-146135102-4	chr3	146135012	146135212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134160, intron 8 of 11)	intron (NM_134160, intron 8 of 11)	13321.0	NM_134160	171166.0	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	5.91435483906182	5.59275499399714	6.04360928316297	6.25672162580049	6.22913452320223	5.84522613113493	5.69234873556233	5.57909488432971	-0.176951354892222	0.55145671842399	0.79892812604468
Merged-chr10-117941051-5	chr10	117940894	117941094	+	983.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045342, intron 3 of 3)	intron (NR_045342, intron 3 of 3)	15535.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	5.04112597965812	5.67408061978974	5.18017655235634	5.13082612488396	5.35182534031959	5.47818772489182	5.15479585964881	5.07450288077354	-0.00790761820417712	0.980485824049302	0.99281244474172
Merged-chr1-13424718-4	chr1	13424619	13424819	+	975.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-50636.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	4.7621529321323	4.90664345154077	4.49682490882313	4.98761293732957	5.20555442572069	5.01533037987202	5.05623120672442	5.04612593863017	0.524969098950154	0.115247855280398	0.375535814673078
Merged-chr7-63905330-4	chr7	63905250	63905450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	L1MC3|LINE|L1	-11507.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	8.11333235589559	7.99771075564169	7.64292210037496	7.58513170321867	7.74352217154129	7.96768447134069	7.84150471448006	7.34575965285155	-0.137509376958744	0.520510817565925	0.780787600139836
Merged-chr3-96244789-3	chr3	96244693	96244893	+	941.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013549)	promoter-TSS (NM_013549)	-664.0	NM_178212	319192.0	Mm.5220	NM_178212	ENSMUSG00000063954	Hist2h2aa2	H2a-614|H2a-615	histone cluster 2, H2aa2	protein-coding	4.16667977137106	3.995533025264	4.02937621252184	4.13233473583522	4.01276971125522	3.93989708762433	3.85971091069334	4.36523043877378	-0.0690425952965146	0.871885748652348	0.95183223179801
Merged-chr2-128573362-3	chr2	128573266	128573466	+	749.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18975.0	NM_001310641	241634.0	Mm.297682	NM_001310641	ENSMUSG00000074812	Spdye4c	Gm355|SpeedyB3|SpyB3	speedy/RINGO cell cycle regulator family, member E4C	protein-coding	3.27129244293039	3.53223626716052	4.06499721969166	3.24700341624764	3.44045613195602	3.57978239716756	3.56060853667877	3.67737025642566	-0.00337009861692592	0.99516703847397	0.998253678348653
Merged-chr17-48300997-4	chr17	48300920	48301120	+	749.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360121, intron 1 of 4)	intron (NM_001360121, intron 1 of 4)	982.0	NM_001360121	328833.0	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	4.01170608226712	3.67341999019991	3.91514124839792	4.02403837044469	4.13601211963028	3.81465851634793	3.99498163929226	4.14274357102755	0.310347239123824	0.480628743942475	0.756060899899244
Merged-chr4-141832427-4	chr4	141832339	141832539	+	921.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-6434.0	NM_007919	13706.0	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	4.47087070275616	4.62001591300531	4.41816827485483	4.46825955741093	5.79646821994604	5.58425356902059	5.35765606287531	5.38172460570223	2.01013235663675	4.08895019562589e-10	2.82296203660966e-08
Merged-chr9-102784611-3	chr9	102784499	102784699	+	800.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44951.0	NR_033301	434510.0	Mm.387937	NM_001034892	ENSMUSG00000093812	Gm5627	EG434510	predicted gene 5627	ncRNA	3.32384739654191	3.64212057064129	3.8849687992088	3.61889454220928	3.79522542795847	3.69497672793735	3.91183456049941	3.78825545875572	0.507771521590198	0.290953292891162	0.603238545744905
Merged-chr2-80524454-4	chr2	80524339	80524539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355411, intron 19 of 30)	intron (NM_001355411, intron 19 of 30)	56743.0	NM_001290745	50884.0	Mm.25203	NM_016965	ENSMUSG00000027002	Nckap1	C79304|H19|Hem-2|Hem2|Nap1|mKIAA0587|mh19|p125Nap1	NCK-associated protein 1	protein-coding	6.33625312724199	6.80028197053263	6.70990861184024	6.75488524194049	6.32109860995004	6.24444097782009	6.44668126804022	6.27502880255772	-0.507780202705022	0.0233638378424991	0.141871234754414
Merged-chr12-113156239-4	chr12	113156152	113156352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134041)	promoter-TSS (NM_134041)	-169.0	NM_134041	104732.0	Mm.87616	NM_134041	ENSMUSG00000037466	Tedc1	4930427A07Rik|AA536649|mFLJ00116	tubulin epsilon and delta complex 1	protein-coding	9.14863560007109	9.39490565869738	9.41404257746909	9.2899046808143	9.21528550882964	9.37923352955458	9.53661417753712	9.10121447136782	0.00198069928603534	0.990089825847279	0.996085111514102
Merged-chr11-29808119-2	chr11	29808019	29808219	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 17 of 41)	intron (NM_146016, intron 17 of 41)	17549.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	3.47644274469801	3.36198632162419	3.69947530089949	4.28557246065895	3.53946705058145	3.39556289254865	3.68408998879417	3.74738081172174	-0.531573505380851	0.353253912277061	0.660145561984416
Merged-chr13-35749363-4	chr13	35749246	35749446	+	962.520874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123386, intron 1 of 6)	Lx9|LINE|L1	7944.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	4.18761454752402	4.50652043511115	4.64083472762664	4.60134912873606	4.47514812224219	4.84912075122937	4.82744863157442	4.47529187453104	0.348738179413672	0.356066895158634	0.662704502355483
Merged-chr5-147758868-4	chr5	147758802	147759002	+	989.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32914.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	4.89176129495565	5.00979694358441	4.89255297401302	5.24792411047513	5.5098348870504	5.54354139796448	5.37109329348435	5.73344418255254	0.901677854055764	0.00334825370167272	0.0347971018004617
Merged-chr4-111719942-4	chr4	111719835	111720035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026470)	promoter-TSS (NM_026470)	-75.0	NM_026470	67946.0	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	7.93856321703212	7.87613685833939	7.6350504030427	7.50904780714437	8.44783120846252	8.62762018135204	8.78815909490755	8.49156883934785	1.08644144888863	1.67031842815407e-09	1.02847400862958e-07
Merged-chr6-124730021-4	chr6	124729917	124730117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 3 of 15)	intron (NM_001077705, intron 3 of 15)	3137.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	6.9409944934778	7.06359812890126	6.99561679697873	7.19050169971353	7.36019242898181	7.3204942702183	7.45000195415385	7.32193346828356	0.409161519498736	0.0254305308010518	0.150242343284202
Merged-chr2-29649417-4	chr2	29649300	29649500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	29680.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	6.15497705455069	6.30475755590872	6.07635100371591	6.20224189018851	6.16898428626045	5.75922113629393	5.86995849009515	5.7185315724822	-0.441342522851408	0.0793293236058729	0.304923961817822
Merged-chr10-12035361-3	chr10	12035263	12035463	+	752.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	426139.0	NM_013898	30058.0	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	3.42178085704994	3.76938775293514	3.78126137595778	4.11951312891657	2.98667969668773	3.20273061351045	3.28722133874769	3.36010310687534	-2.16903846774516	0.000281424823695873	0.0048152734437136
Merged-chr5-139325621-4	chr5	139325518	139325718	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172723)	promoter-TSS (NM_172723)	-154.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	5.42177548292468	5.49352100198665	4.98942510834866	5.27937966172324	5.43144363483314	5.56803417649531	5.62561733972975	5.30057496352141	0.307596466031493	0.293925379054257	0.606344613833264
Merged-chr3-149084347-1	chr3	149084247	149084447	+	653.0	f0_balb.idr	Intergenic	Intergenic	-129712.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	2.76464044404448	2.95275062261223	2.93547501046987	2.86365103877086	2.78580864238376	2.43795194559928	2.48987478816795	2.49478662002144	-1.60425103126328	0.0325982435818882	0.176893373478327
Merged-chr3-130079944-4	chr3	130079851	130080051	+	987.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19044.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	4.48741067562973	4.72515561658621	4.68738127402145	4.55610061475384	4.52612495980214	4.32757122657079	4.70117802300794	4.684277180659	-0.100815234896933	0.778806439787829	0.913798357801297
Merged-chr19-4191083-2	chr19	4190983	4191183	+	998.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178650)	promoter-TSS (NM_178650)	-36.0	NM_178650	108995.0	Mm.288312	NM_178650	ENSMUSG00000040247	Tbc1d10c	1810062O14Rik|AI428527	TBC1 domain family, member 10c	protein-coding	3.77494188597645	3.66749187768476	3.36548297113511	3.31712145115809	3.55697276577874	3.73576979788028	3.70822948604639	4.33292295689857	0.975594078670019	0.0643023122443743	0.269447042303421
Merged-chr3-31090187-4	chr3	31090076	31090276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4882.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	5.59862330440555	5.7139919828011	5.50829396627951	5.3980686066416	6.24078872465608	6.42720902024533	6.35335255694679	6.30018517156096	1.23742691463627	2.82960343324278e-07	1.10360735767007e-05
Merged-chr5-25498597-4	chr5	25498485	25498685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081383, exon 1 of 59)	5' UTR (NM_001081383, exon 1 of 59)	198.0	NM_001081383	231051.0	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	4.83351217718302	4.83394544429025	5.68145406887494	5.11110070833149	5.08570168695949	5.3679068916741	5.00223035747345	5.33808277693151	0.0829563897943285	0.815558732279714	0.928838606005649
Merged-chr1-181921698-3	chr1	181921599	181921799	+	904.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010135, exon 7 of 15)	exon (NM_010135, exon 7 of 15)	-79298.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	3.80041002182753	3.78433518805657	3.80095158920682	3.87136386238477	3.57134910207192	3.75692963240945	3.92701661299657	3.84832425219974	-0.126107852195	0.781529329159498	0.914926993310043
Merged-chr17-32993140-4	chr17	32993077	32993277	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045559)	promoter-TSS (NM_001045559)	38.0	NM_001045559	240067.0	Mm.246667	NM_199020	ENSMUSG00000053390	Zfp952	BC057593|C920016K16Rik	zinc finger protein 952	protein-coding	4.78715918969647	5.18544244920644	4.90011317322314	4.86864870504374	4.78088709252691	5.26891985558174	4.76546646820683	4.70430979620557	-0.0994688587947611	0.774391984950983	0.911820181152855
Merged-chr15-100754264-3	chr15	100754172	100754372	+	891.5888669999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7475.0	NM_021530	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	3.67352690296302	3.69951838765659	3.54381763688546	3.42895369182009	4.37090167045003	4.65200199664608	4.07933357383232	4.14028054977797	2.05954344864231	4.33883848094042e-06	0.00013075113642458
Merged-chr4-138014326-4	chr4	138014231	138014431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	16506.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	6.41389899817797	6.38946257450531	6.17204567317452	6.61367237420436	5.44010785185964	5.69089514408926	5.60239342604959	5.84184793435056	-1.22984189602839	1.47013385047148e-06	4.97114761723087e-05
Merged-chr10-121374817-4	chr10	121374711	121374911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 3 of 13)	intron (NM_029364, intron 3 of 13)	9721.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	7.83932457201462	7.79206133929523	7.98923942029102	7.92520360003335	8.02007027105119	7.81462965189549	7.88254291323409	7.64064993569938	-0.0476649396138815	0.78133026742986	0.914858982946737
Merged-chr16-57347906-4	chr16	57347798	57347998	+	928.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	-5379.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	4.26987838194405	3.97459399837801	4.12910495090035	4.24571772674456	4.62021556979234	4.5258985387891	4.378164584175	4.22241052097606	0.694432285249235	0.0788938041169449	0.303966978799393
Merged-chr18-37720501-3	chr18	37720389	37720589	+	615.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033576)	promoter-TSS (NM_033576)	-65.0	NM_033576	93701.0	Mm.247203	NM_033576	ENSMUSG00000103585	Pcdhgb4	-	protocadherin gamma subfamily B, 4	protein-coding	3.41424432623056	3.08135645886532	3.41477067358229	2.76741103850188	3.13037964723892	2.96696131727121	3.18230186565053	3.50981441645564	0.0681427321282426	0.914260971228666	0.967950384482346
Merged-chr13-45089259-1	chr13	45089159	45089359	+	564.0	f0_c57.idr	Intergenic	Intergenic	-87163.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	3.70308573175701	3.83394407248404	3.70359150149699	3.43864784491254	3.78232014800241	4.17045681167776	3.844792167759	3.99943967181569	0.835298342605865	0.0718426543733743	0.287919452641609
Merged-chr18-39620062-4	chr18	39619967	39620167	+	984.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132822.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.73816335011095	4.90476946116544	4.84520285557387	4.57096032336361	4.63195458866445	4.67172445451771	4.28562087739736	4.77216949841994	-0.339196730547712	0.350762005829751	0.65825328410862
Merged-chr2-33154937-2	chr2	33154837	33155037	+	801.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290572, intron 12 of 17)	intron (NM_001290572, intron 12 of 17)	-23501.0	NM_001355201	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	3.12880010792921	3.06294928513511	2.66118527620985	2.83299739394458	3.14038189713302	3.18283936859528	3.00058400516553	3.18248903247922	0.811615806141696	0.182075465427775	0.478756909999394
Merged-chr4-47312911-3	chr4	47312814	47313014	+	907.138855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009928, exon 40 of 40)	3' UTR (NM_009928, exon 40 of 40)	-40308.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	3.68768130230925	3.68456945987416	4.05417272860934	3.88837138193684	3.51491889155408	3.7518968875796	3.61990425454389	3.45511558236555	-0.78241116728127	0.106566792881386	0.359920177959867
Merged-chr4-59058150-1	chr4	59058050	59058250	+	650.0	f0_balb.idr	Intergenic	Intergenic	22994.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	3.47155022868548	3.08708686683622	3.61749988094268	3.44273054431884	3.0969634789547	3.29751693838526	3.29533335062893	3.36301956054413	-0.559011305607746	0.314387203836543	0.626354487695056
Merged-chr15-64306326-4	chr15	64306233	64306433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	6340.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	5.25534198385032	5.55143709457786	5.7556028276871	5.85507066802044	5.70026503144467	5.72142500204269	6.11718658634	5.88944366180598	0.368194618368852	0.199527130131927	0.50147358341222
Merged-chr10-39412271-4	chr10	39412160	39412360	+	981.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	42461.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	3.6779091586144	4.24729637102148	4.58573273149697	4.21866604433508	4.31653183900996	4.21443480322348	4.25764973802066	4.35869874630294	0.167064470414931	0.706976559272331	0.882312931718287
Merged-chr6-97489025-4	chr6	97488927	97489127	+	958.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-1207.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.43773333240943	4.64486387201244	4.48743743824946	4.63586129634421	4.82140452443468	5.17187589245882	5.28684052648676	5.20512667636723	1.12719723276993	0.00102586916790861	0.0137230485815762
Merged-chr18-55282485-3	chr18	55282370	55282570	+	921.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-289879.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	2.70513582359649	2.63517728639465	2.70539207057005	2.22886717355401	3.84360254716523	4.04242673403066	3.68516547546199	3.28942437472724	7.65459084514567	1.88945583198866e-14	2.80771558799834e-12
Merged-chr13-59822711-4	chr13	59822617	59822817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 1 of 27)	CpG	430.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	7.29371377225966	7.68142224445035	7.35891440576433	7.32972722157385	7.50249138793375	7.70132032547704	7.60813350227885	7.66490285357357	0.255887463707708	0.16427826794987	0.454403405526126
Merged-chr13-13968976-4	chr13	13968875	13969075	+	733.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362405, intron 2 of 12)	intron (NM_001362405, intron 2 of 12)	14301.0	NM_178640	97884.0	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	3.87346319496687	3.99471697189685	4.02853475020934	4.14776246125814	4.08419654787842	4.37714000176623	3.91172524570323	4.07374353090353	0.245582002442942	0.564751421704828	0.806938362083024
Merged-chr1-181881772-4	chr1	181881695	181881895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39394.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	5.96581492550453	5.72448383540263	5.75865114282923	6.15595915602207	5.95129998263045	5.95893226206966	5.62543878687336	5.72919921252119	-0.162235870970115	0.543812152514137	0.794907181513579
Merged-chr10-8882718-2	chr10	8882618	8882818	+	999.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	3352.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.21505588909205	3.37868292399788	3.27322555105529	2.86786047066258	3.11734440557444	3.20365123659612	3.20330037204589	3.43026614765169	0.198772824517447	0.731735284892515	0.893763558604771
Merged-chr2-57103154-3	chr2	57103082	57103282	+	780.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11856.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	3.21864834754991	3.4376467380951	3.39007824540301	3.77654111790912	2.95409227515186	2.98189251278813	3.26636739383879	3.33372660567105	-1.28138554806293	0.0338346334187	0.181431020951458
Merged-chr8-72268519-4	chr8	72268417	72268617	+	957.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28499.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	6.35739058599203	6.03418312468405	6.57377692674391	6.74461227710071	5.06668801511403	4.978059260337	5.23121466411377	5.13903752209036	-2.26651192183962	2.65274636887488e-14	3.90123623533357e-12
Merged-chr15-41861181-4	chr15	41861092	41861292	+	993.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_130885)	TTS (NM_130885)	8528.0	NM_175456	223513.0	Mm.148913	NM_175456	ENSMUSG00000042895	Abra	C130068O12Rik|STARS	actin-binding Rho activating protein	protein-coding	5.34009201796738	5.40064002994798	5.51496216823576	5.79579207888074	5.18073559301506	4.99904610859938	5.68571450373287	5.84212010105541	-0.114900872292083	0.730979517506318	0.893388729114438
Merged-chr13-62880438-3	chr13	62880363	62880563	+	657.727783	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019395, intron 1 of 6)	intron (NM_019395, intron 1 of 6)	7819.0	NM_019395	14121.0	Mm.423078	NM_019395	ENSMUSG00000069805	Fbp1	Fbp-2|Fbp2|Fbp3	fructose bisphosphatase 1	protein-coding	3.07410248744093	3.18038289486632	3.41179678372325	3.18813701440885	3.5438894156289	3.94330922393527	3.80156820473793	3.67918361065781	1.75312329369958	0.000740438558662645	0.0105830675034234
Merged-chr9-65524153-4	chr9	65524036	65524236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55951.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	5.69462632317744	5.77685610418499	5.47528001431731	5.36679848480547	5.93473344288598	5.65278283806167	5.95691872407323	5.78880453934194	0.446213930848597	0.0972235589604424	0.34164609599497
Merged-chr7-19119785-4	chr7	19119681	19119881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175530)	promoter-TSS (NM_175530)	-78.0	NM_175530	243867.0	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	7.84017431049682	8.01502764193233	7.56074749178608	7.69607742517463	7.87171545331841	7.77475644625997	7.86117992712919	7.56477638174506	-0.0150337586195134	0.935101332433842	0.976465285317276
Merged-chr7-102267476-8	chr7	102267352	102267552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009287)	promoter-TSS (NM_009287)	-372.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	6.48874075890696	6.30528259287883	6.88284396934289	6.08889926945048	6.40383870593486	6.88479212306592	6.47348705246398	7.01935125739899	0.367722629347097	0.17749319044349	0.472907898531277
Merged-chr6-122598009-6	chr6	122597803	122598003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134391, intron 2 of 7)	ID_B1|SINE|B4	4541.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	3.55389404304744	3.51254675978703	3.49951889571953	3.1101476599267	3.67282974522572	3.55847534026805	3.4857828812477	3.75068869694265	0.679163195725243	0.188384627021276	0.486992724783917
Merged-chr8-84661708-4	chr8	84661616	84661816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010499, exon 1 of 1)	3' UTR (NM_010499, exon 1 of 1)	1136.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	7.74358156307099	8.01556768634576	7.73666010733772	7.8918808982584	7.97486810525621	8.04705366801876	8.10306945752477	7.86427020232341	0.184735357464456	0.270523051646677	0.582339622429786
Merged-chr2-165112306-4	chr2	165112143	165112343	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_174988, exon 12 of 12)	exon (NM_174988, exon 12 of 12)	-21493.0	NR_033448	72211.0	Mm.482899	NR_033448	ENSMUSG00000078935	1700025C18Rik	-	RIKEN cDNA 1700025C18 gene	ncRNA	4.43821889282238	4.66443656324783	4.24661951544366	4.50382915828726	4.79485892027807	4.69858418662927	4.79881216830831	4.48004677370095	0.492052623747379	0.174507347576206	0.468988494457015
Merged-chr5-121943780-3	chr5	121943689	121943889	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007804, intron 2 of 22)	intron (NM_007804, intron 2 of 22)	94792.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	5.53490225128765	5.81611870062519	5.48575826112064	5.93285665952757	4.27701285695918	5.01737661974682	4.63115374879328	4.64956891418398	-2.05697338736698	4.30923196793721e-09	2.45381457796642e-07
Merged-chr3-104715156-4	chr3	104715046	104715246	+	785.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62401.0	NM_183224	329731.0	Mm.389494	NM_183224	ENSMUSG00000055865	Fam19a3	7530404M11Rik|Sam3|TAFA3|Tafa-3	family with sequence similarity 19, member A3	protein-coding	3.18773196060287	3.35506132534988	3.31407335805284	3.51646320592939	3.57879706568258	3.36384318998221	3.51987881380189	3.53244678197335	0.481030313234685	0.355148215837782	0.661791058566351
Merged-chr1-88698493-4	chr1	88698372	88698572	+	955.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177305, exon 1 of 1)	3' UTR (NM_177305, exon 1 of 1)	3719.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	4.58685940651874	4.70214532402342	4.54778502127616	4.39468725169661	4.41970810027104	4.55022724978248	4.74595403071939	4.41784453405119	-0.036990549003033	0.919515472157969	0.970308092934814
Merged-chr7-44895948-7	chr7	44895845	44896045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027376)	promoter-TSS (NM_027376)	-134.0	NM_027376	70300.0	Mm.276298	NM_027376	ENSMUSG00000011658	Fuz	2600013E07Rik|b2b1273Clo	fuzzy planar cell polarity protein	protein-coding	6.06328603485656	6.23100185968433	6.55691892555541	5.96297858581381	6.19025094440124	6.60503598766649	6.11910051108145	6.59664479808776	0.268985323447502	0.30528250758068	0.617706648559005
Merged-chr18-31701394-4	chr18	31701284	31701484	+	887.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172965, intron 16 of 20)	RMER3D-int|LTR|ERVK	-58440.0	NM_153515	225339.0	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	3.93614239004554	4.25347161723669	3.93666267535508	4.47503186382091	4.36254396675935	4.16950952636419	4.34709477835361	4.48051757681568	0.369271074101312	0.392104856942777	0.691774675781771
Merged-chr4-19895344-4	chr4	19895238	19895438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	27228.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	7.41974941392171	7.27737807430063	7.26766823028438	7.62072386877741	7.45994192373634	7.35491460634409	7.46768889826218	7.11270515771325	-0.0736870784077068	0.705971222176429	0.881879743016467
Merged-chr12-79347881-3	chr12	79347778	79347978	+	935.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	50527.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	3.10299786626863	3.51267589249919	3.03165536204669	3.58777023731403	3.48831606430745	3.41057628107523	3.60163030734272	3.46586262166212	0.501554806260819	0.387660669895859	0.688489915228238
Merged-chr4-139293750-3	chr4	139293590	139293790	+	800.255554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_151463)	TTS (NR_151463)	17018.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	3.17976782394527	2.95533626515879	3.01945980880242	2.66999024074258	2.6950486052665	2.65012583387919	2.75956944576199	3.12698341390387	-0.635711201124247	0.346901863437999	0.654996695461728
Merged-chr12-84218427-4	chr12	84218306	84218506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	CpG	475.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	4.9807086710651	4.72379743063218	4.34796149294932	4.40105859720002	4.58418835258416	4.32354901608955	4.73473940032538	4.56617761710971	-0.145175839211906	0.709772486788535	0.883773215028797
Merged-chr11-29715796-1	chr11	29715696	29715896	+	560.0	f0_balb.idr	intron (NM_194054, intron 3 of 8)	intron (NM_194054, intron 3 of 8)	-2767.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	2.67150038856317	2.61618672416822	2.55374402773153	2.90198051188613	2.1579647818224	2.21789711223172	2.19700785961274	2.35250394216239	-3.58215608858876	0.000491725582114319	0.00762040827548773
Merged-chr6-92286639-3	chr6	92286557	92286757	+	801.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42007.0	NM_009426	22044.0	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	3.37657190916654	2.96480246347493	3.2556839603724	2.84128907660649	3.3403343192075	3.71221069574355	3.7124803411183	3.58846759178248	1.72321074001049	0.00251522665250669	0.027899535281093
Merged-chr13-113493193-4	chr13	113493094	113493294	+	943.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	9650.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	4.4350192926151	4.50964004670314	4.21580396602909	4.28041157421858	4.46393270133226	4.18780256017773	4.59965110648585	4.16488101938893	0.0276045602446999	0.944118996541939	0.979941468055742
Merged-chr11-70201854-2	chr11	70201754	70201954	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12056.0	NM_153081	216867.0	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding	3.37799955115942	3.15347146836103	3.43108458715714	3.09301348340701	3.3217529206398	3.25538604726683	3.06814264897049	3.52793382864027	0.153970686524107	0.782287270362264	0.91529005173258
Merged-chr13-56522407-4	chr13	56522297	56522497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346732)	promoter-TSS (NM_001346732)	-75.0	NM_178674	213311.0	Mm.233904	NM_178674	ENSMUSG00000035509	Fbxl21	D630045D17Rik|FBL3B|FBXL3B|Psttm	F-box and leucine-rich repeat protein 21	protein-coding	5.9110578979886	5.7257397392108	5.46958549520472	5.37006551423029	5.79338304848871	5.39008130587969	5.77436851215897	5.55106509056235	0.0382910392443401	0.895250613501672	0.960791502086898
Merged-chr13-19874982-1	chr13	19874882	19875082	+	903.6666869999999	f0_balb.idr	Intergenic	Lx8b|LINE|L1	-50725.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	3.79414922534236	4.24211744283803	3.79475080468414	3.91763052977992	3.07417383410372	3.17887876481189	3.27477668701591	3.2841066115086	-2.79651601178685	3.27535816295921e-06	0.000101895419004053
Merged-chr19-16404573-4	chr19	16404469	16404669	+	981.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-31098.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	4.7698830457615	5.05707796770699	4.92600471525652	5.15215391683887	5.43177854422072	4.77582651093387	5.03990131590936	5.06113303398774	0.224771559387808	0.509633278281767	0.774132584192743
Merged-chr9-42908918-4	chr9	42908819	42909019	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175481, intron 1 of 20)	intron (NM_175481, intron 1 of 20)	35452.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	6.55572748843443	5.63164318355073	7.16854514642251	7.25595749371079	6.28266400096086	5.64120630938239	6.50719095161534	6.32854522653096	-0.828007325851265	0.148760034348714	0.430682693175785
Merged-chr7-141461945-5	chr7	141461857	141462057	+	865.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152220, exon 2 of 2)	non-coding (NR_152220, exon 2 of 2)	863.0	NM_001025103	213573.0	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	3.45772659599541	3.22969754146087	3.55326398488971	3.35609491580378	3.00062762590727	3.09582026136572	3.11064418625846	3.18211483974567	-1.19591282345764	0.0346958177018427	0.184382082141217
Merged-chr6-21955509-4	chr6	21955433	21955633	+	949.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311061, intron 4 of 11)	Lx8|LINE|L1	5918.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	4.64551616328429	4.41145771558009	4.68593252426379	5.05917139289991	4.76446828963398	4.73817820300164	4.84404758737249	4.60237894079994	-0.00689677734699004	0.985180667033152	0.994598605754949
Merged-chr9-44249709-4	chr9	44249626	44249826	+	726.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133226, exon 6 of 11)	exon (NM_133226, exon 6 of 11)	1738.0	NM_133226	170761.0	Mm.29872	NM_133226	ENSMUSG00000032105	Pdzd3	NaPi-Cap2|Pdzk2	PDZ domain containing 3	protein-coding	3.65533522407787	3.59640734115283	3.25917971575108	3.54858565013527	3.56848334897916	3.49883022657805	3.64033173898059	3.38366065512501	0.00820918979248575	0.987014406458002	0.995258250959001
Merged-chr2-148585305-4	chr2	148585208	148585408	+	848.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-87307.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	4.01802725419719	4.39069448942309	4.38214674298488	4.01133606740269	4.23456666450426	4.3397441428743	4.23847653193716	4.01630777041816	0.0198632893476244	0.961839219196225	0.986296046664478
Merged-chr10-4079392-3	chr10	4079299	4079499	+	953.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 20 of 27)	intron (NM_001170785, intron 20 of 27)	106324.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	3.56095665109823	3.52825331701344	3.56142999558713	3.89968587012516	3.51181496392255	3.62024293337261	3.70053561247347	3.44509997687963	-0.291515863198972	0.560530150266107	0.80456182516632
Merged-chr16-57528674-4	chr16	57528624	57528824	+	913.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-20518.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	4.72094349192571	4.60323768979358	4.75642672914267	5.08853540012353	4.18136187097081	4.10936579722567	4.38387744562219	4.3074435631937	-1.31434315390286	0.000730938237474272	0.0104797031768856
Merged-chr12-118855336-3	chr12	118855223	118855423	+	641.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8994.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	3.3261028954936	3.64463229251568	3.38929045824899	3.59584688737791	3.10293405269128	3.67966385533037	3.87315283416516	3.6122572833437	0.301076432544699	0.590215920394471	0.820844033895718
Merged-chr10-75951827-4	chr10	75951741	75951941	+	893.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2673.0	NM_198635	333669.0	Mm.31077	NM_198635	ENSMUSG00000033255	Gm5134	EG333669	predicted gene 5134	protein-coding	4.04847123126118	4.000143384262	3.7999512729793	3.82378382792298	4.08519570047953	4.07750801646039	3.67194720229423	4.09100573324603	0.216325653699143	0.624892689015492	0.839659374707287
Merged-chr11-99168198-4	chr11	99168100	99168300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13123.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	6.99008413635384	7.57009226989067	7.24885632967912	6.58833567271881	7.44482035613708	7.20717744829195	7.35206158631272	6.75933797440442	0.104179683476807	0.6969723681585	0.877559881683723
Merged-chr15-58075480-4	chr15	58075392	58075592	+	822.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009572, intron 1 of 3)	intron (NM_009572, intron 1 of 3)	1016.0	NM_001042438	22770.0	Mm.244931	NM_009572	ENSMUSG00000022361	Zhx1	-	zinc fingers and homeoboxes 1	protein-coding	3.16937967399937	3.53372277331691	3.42187039427845	3.59261848969884	3.62445977583801	3.41375977243682	3.61761538636602	3.52985853746997	0.332938607232218	0.521012584181019	0.78111362380667
Merged-chr4-119663627-3	chr4	119663533	119663733	+	960.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-4688.0	NM_008191	14916.0	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	4.14671347815553	4.03606623983148	4.22483237294024	3.98865493950785	3.52670294383944	3.5293540650523	3.65302964901003	3.60572730802707	-1.57692500447939	0.000926179568226922	0.0126558908594402
Merged-chr6-86527177-3	chr6	86527066	86527266	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011865)	promoter-TSS (NM_011865)	-164.0	NR_037960	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	5.69439238223409	6.17440323100445	5.82520401510141	5.70660749698483	5.78233266910772	6.09616654176646	6.01975523320851	6.41845598731687	0.363969175661874	0.188077157978122	0.486593936638499
Merged-chr8-109596002-2	chr8	109595902	109596102	+	796.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_020046, intron 5 of 8)	intron (NM_020046, intron 5 of 8)	12671.0	NM_020046	56749.0	Mm.23894	NM_020046	ENSMUSG00000031730	Dhodh	2810417D19Rik|AI834883	dihydroorotate dehydrogenase	protein-coding	3.33824779016684	3.16807870644658	3.28141252197296	3.02390247133687	3.41983729983287	3.39501261550275	3.26909310370109	3.49453168207786	0.741035719687318	0.162064435037767	0.451144248358323
Merged-chr6-32539313-3	chr6	32539207	32539407	+	729.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	28166.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	3.10957015918858	3.50444658709166	2.99237011077477	3.04557938099991	3.03187798351209	2.74839404066603	2.63722476781492	2.92794548939197	-1.41142278802499	0.0406024969373905	0.203639031109535
Merged-chr4-117167445-4	chr4	117167343	117167543	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290662, intron 10 of 19)	intron (NM_001290662, intron 10 of 19)	-11311.0	NM_009098	20116.0	Mm.260904	NM_009098	ENSMUSG00000047675	Rps8	-	ribosomal protein S8	protein-coding	5.28889172319381	5.09645999061306	5.00332264034825	4.76332634935187	5.38892177088336	5.24726612464142	5.31853588838309	4.76625745764122	0.323467566670393	0.338497937579149	0.648052521556422
Merged-chr11-6547183-3	chr11	6547096	6547296	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190343, intron 1 of 8)	CpG	309.0	NM_001190343	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	5.74342816390822	5.81117356664209	5.47472460687695	5.70274405745335	5.67868204231045	6.05518289380207	5.66605777180619	5.50057251344267	0.0731988919242389	0.788740588647778	0.91812687233996
Merged-chr17-56469017-4	chr17	56468929	56469129	+	899.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 1 of 27)	intron (NM_001252455, intron 1 of 27)	-6808.0	NM_001252456	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	4.13691814697465	4.60404632248976	3.91612690685998	4.21494417768416	4.07303394919457	4.21294714690851	4.43248174261921	4.94031257374518	0.495564563090172	0.283134700144078	0.595263611222688
Merged-chr10-34206611-4	chr10	34206516	34206716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	935.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	6.72131781107226	7.05054388719332	6.76742644717778	6.84286061770031	6.89888232934818	7.20782955887032	6.91032017238298	6.77723769162995	0.139441152554218	0.501520822181565	0.7692646023024
Merged-chr14-59440924-4	chr14	59440817	59441017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001320725)	promoter-TSS (NM_001320725)	-37.0	NM_001320721	239122.0	Mm.205022	NM_001081024	ENSMUSG00000071350	Setdb2	Clld8|Gm293|KMT1F	SET domain, bifurcated 2	protein-coding	7.77002526134377	7.79804615606964	7.97934811654713	8.24342785279399	7.99893891353907	7.73845303612942	8.20467812312232	7.98760939396384	0.0295164418868753	0.878872641125668	0.954708519232108
Merged-chr1-120020632-4	chr1	120020549	120020749	+	968.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 1 of 13)	MTD|LTR|ERVL-MaLR	13669.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	5.70092063614739	5.66226509225997	5.92528304891295	6.09097266095203	5.40360703430034	5.14826030971301	5.10010908477891	5.79195898284942	-0.800192415943052	0.00929307482365167	0.0748949018198259
Merged-chr10-99460007-4	chr10	99459928	99460128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149143.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	8.04504681921005	8.04820125798617	7.78921302442313	7.9420111462358	7.74610385919582	7.72962833932735	7.50546624880843	7.39840864440337	-0.461210695160895	0.00970370130092611	0.077244817937047
Merged-chr1-64933214-4	chr1	64933162	64933362	+	888.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	intron (NM_001039493, intron 2 of 7)	23562.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	4.25834060932694	4.15394832186069	4.34070804388864	4.13956926344712	3.86536962240528	3.98946509711981	4.06054370759276	4.29774671500026	-0.421981400296929	0.31258448687617	0.62451046865229
Merged-chr13-58066974-3	chr13	58066867	58067067	+	978.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 6 of 16)	intron (NM_001195075, intron 6 of 16)	35461.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	4.37878232028245	4.2940193859866	4.33947968577992	4.32154415207189	4.45094025266672	3.91127566120663	3.94847425055824	3.96189261811193	-0.562592958370045	0.194489831517426	0.494891206434022
Merged-chr6-54958137-4	chr6	54958022	54958222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	13539.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	5.30769492051807	5.55665780345636	5.63709495381666	5.58580300297088	6.00244887988895	5.73164881390664	5.88881748595981	5.80506790619373	0.553219959326709	0.0337804281823028	0.181235931076214
Merged-chr3-132084337-3	chr3	132084218	132084418	+	848.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020265)	promoter-TSS (NM_020265)	-974.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	4.0623327892151	4.15113746380001	4.62808252927388	4.61738647877714	3.92402760158442	3.8394333833128	3.99474015453601	4.33367579620258	-0.914440282898412	0.0429970279780839	0.210969980497193
Merged-chr13-107027422-3	chr13	107027312	107027512	+	775.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015471, intron 2 of 3)	ORR1E|LTR|ERVL-MaLR	4842.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	4.17715233084683	4.34481562017573	4.30319413395436	4.34787873790568	3.63303604044242	3.82736594634386	3.81191718319815	4.17516628018686	-1.16053021009642	0.00899796785017203	0.0731627088882106
Merged-chr11-96775890-4	chr11	96775809	96776009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028965, intron 2 of 8)	intron (NM_028965, intron 2 of 8)	1646.0	NM_028965	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	5.60655409144169	5.56190900408491	5.60753387711361	5.48142867341322	5.64774323865151	5.62017699589177	5.23412241309086	5.25621265432765	-0.166889102647127	0.555970151387482	0.801730133825154
Merged-chr15-51083814-4	chr15	51083714	51083914	+	966.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-193773.0	NM_032000	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	4.84503251004649	5.21788061749461	4.95756837082225	4.95129579756458	5.07245778537187	4.81598672926541	4.86102482485065	5.42442028320474	0.13196279362285	0.694721646403179	0.876091214911152
Merged-chr18-77949734-4	chr18	77949633	77949833	+	725.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 2 of 43)	intron (NM_001195633, intron 2 of 43)	11266.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	3.91466558189666	3.85963296439863	3.96666990986251	3.97751455173992	4.35762815293376	3.98285074392681	4.2188019501447	4.06137026944756	0.628022460987036	0.132738386648382	0.405738749474138
Merged-chr4-48591064-4	chr4	48590971	48591171	+	919.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021436, intron 1 of 9)	Tigger13a|DNA|TcMar-Tigger	5897.0	NM_021436	230157.0	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|TR-1|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	4.36023998503287	4.64935543274011	4.15367910421079	4.75214682278486	4.94530721270598	4.58456472277631	4.51936085547806	4.86654727033867	0.491624376466409	0.213344905803656	0.518713125248401
Merged-chr8-105827341-4	chr8	105827273	105827473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024445)	promoter-TSS (NM_024445)	-23.0	NM_145824	74334.0	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding	8.29003009043176	8.67739182301957	8.39679897241516	8.38486040555724	8.54402213897161	8.71545596689577	8.46940078626807	8.42803435592405	0.122267852389234	0.460847133111177	0.742796541919803
Merged-chr11-120555062-4	chr11	120554957	120555157	+	903.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3925.0	NM_026814	68701.0	Mm.46477	NM_026814	ENSMUSG00000025129	Ppp1r27	1110033I14Rik|Dysfip1|toonin	protein phosphatase 1, regulatory subunit 27	protein-coding	4.9340333304875	4.55228297845226	4.68056953483634	4.96410710869388	4.84694802551383	4.85453781722827	4.65898360199363	4.75544351758774	-0.0455457303968692	0.894834283835466	0.96069135232764
Merged-chr14-70792826-3	chr14	70792726	70792926	+	803.283325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18445.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	4.29023228360797	3.75001942229056	4.21389534962113	4.29604352849512	3.86278903489154	3.60230297319363	3.77854501300605	3.73506323364567	-1.13634032649701	0.0165364660067551	0.112404411901293
Merged-chr16-43432232-3	chr16	43432124	43432324	+	782.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	-12028.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	3.79561271171946	3.72533512152026	3.7483529548468	3.70153445967398	3.54028708951436	3.46565648956339	3.73246779333154	3.47628072035021	-0.5756194854179	0.228763004505625	0.537574179521488
Merged-chr1-192136713-4	chr1	192136621	192136821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033536)	promoter-TSS (NR_033536)	-177.0	NR_033536	100038712.0	Mm.474908	NR_033536	ENSMUSG00000097316	Gm10516	-	predicted gene 10516	ncRNA	5.57674212287295	5.45722025656403	5.67924003433879	5.76394699092597	5.41361836068821	5.12584930228701	5.93096593473738	5.46348994515771	-0.192995629560573	0.524647609174872	0.783071329178099
Merged-chr16-11439668-4	chr16	11439572	11439772	+	950.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 11 of 20)	intron (NM_028964, intron 11 of 20)	34024.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	4.0466308234473	4.28096604387312	4.50988353949037	5.05814903655197	4.83727867667256	4.64229747006015	4.72442034544788	4.91248570602432	0.481017348585879	0.275517186910528	0.587332669874348
Merged-chr2-60851406-4	chr2	60851308	60851508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	30030.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	6.56140355602858	6.9156223860974	6.79129765977411	6.87878376503243	6.49396012610835	6.83565746011262	6.81110275633267	6.63877983269865	-0.153352020576335	0.471785223474189	0.750116163814986
Merged-chr2-92183259-6	chr2	92183157	92183357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346704)	promoter-TSS (NM_001346704)	-925.0	NM_138755	192285.0	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	5.36244861468881	5.1684677242673	5.5514993583975	5.22321707548367	5.1556447428342	5.21315883435684	5.21594999981487	5.68875743709952	0.0131228441369093	0.966137053385739	0.988026381474581
Merged-chr2-122132268-4	chr2	122132096	122132296	+	908.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026251, intron 2 of 17)	RLTR20C1_MM|LTR|ERVK	-13810.0	NM_145531	214585.0	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	SPG11, spatacsin vesicle trafficking associated	protein-coding	4.02549978000935	3.51523190726007	3.89664042882978	3.65026140740541	3.80596660906301	3.51918378123989	3.63178713826695	3.75002354142588	-0.274741943557563	0.575197050988198	0.812840256750956
Merged-chr7-28796818-4	chr7	28796709	28796909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177158, exon 9 of 12)	exon (NM_177158, exon 9 of 12)	7840.0	NM_177158	320435.0	Mm.74632	NM_177158	ENSMUSG00000051735	Rinl	5830482F20Rik|9930116N10Rik	Ras and Rab interactor-like	protein-coding	7.11648132286814	7.17489528227111	7.00630790470469	7.10891461161954	7.14169838894248	7.23422616111556	7.47381414753552	7.31960213330952	0.257205370275315	0.167010471034521	0.458486513335628
Merged-chr11-9334999-4	chr11	9334894	9335094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 26 of 61)	intron (NM_178259, intron 26 of 61)	143052.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	5.9417908545208	5.96268229825854	6.06594691391598	6.41160892067598	6.97393672052833	6.8478794785196	7.07401159234043	6.69579407579853	1.12112713319521	3.38191324156671e-06	0.000104615907267048
Merged-chr7-66661772-4	chr7	66661686	66661886	+	837.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080443, intron 4 of 5)	B3A|SINE|B2	27775.0	NM_080443	117589.0	Mm.34785	NM_080443	ENSMUSG00000030509	Asb7	AI449039|Asb-7|D030055C23Rik	ankyrin repeat and SOCS box-containing 7	protein-coding	3.81314488704775	4.11914804248546	4.15078308375377	4.0409197489282	3.98284200204601	4.23240013743191	3.56167841037117	3.86536440102988	-0.28772117146162	0.535131664971461	0.789596533602895
Merged-chr11-100714736-3	chr11	100714646	100714846	+	884.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029307)	TTS (NM_029307)	896.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	3.54216295460535	3.4933146576602	3.04551745232833	3.10619416092286	3.61338928544695	3.36814121234583	3.52772787353504	3.73211417302571	0.878258543241516	0.108726221568066	0.364041895257499
Merged-chr8-84070379-4	chr8	84070266	84070466	+	998.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	3530.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	4.79820499279593	5.11939708485325	5.29184425322239	4.81538171266305	4.95180202757494	4.97576490587526	5.02826276882859	5.04948243686883	-0.0206524314615751	0.949652421644227	0.981984185023304
Merged-chr18-73572472-4	chr18	73572375	73572575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039214)	promoter-TSS (NM_001039214)	-230.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	9.30821420737897	9.40557459810754	9.37838130956201	9.35281800473472	9.4630144066467	9.74055644895514	9.7591467892117	9.54918325125355	0.33129971495895	0.0201828193482225	0.128842412411402
Merged-chr1-150496834-3	chr1	150496739	150496939	+	731.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-30674.0	NM_021400	96875.0	Mm.174256	NM_021400	ENSMUSG00000006014	Prg4	CACP|DOL54|JCAP|MSF|SZP|lubricin	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	protein-coding	3.50647452757754	3.7733037043465	3.81413288402179	3.6229165378961	3.3512293493429	3.62289249850646	3.60317271585404	3.56156805923131	-0.483893183766286	0.325371338941944	0.636913344396943
Merged-chr8-106433140-3	chr8	106433037	106433237	+	748.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17798.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	3.37270200960782	3.72428715374992	3.49431671483215	3.37734638012578	3.91945423755606	3.55029038313286	3.7850469667018	3.4924927970067	0.662717842569907	0.186625993229644	0.484625049457725
Merged-chr12-24564599-2	chr12	24564499	24564699	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7688.0	NM_001161406	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	2.94053057909119	3.13896438288005	3.19968416766155	2.99333810999552	3.20010716237511	3.18765860235809	3.40066789875096	3.46214942112701	0.946211155536514	0.0856378831954674	0.318707445413073
Merged-chr15-98145658-4	chr15	98145556	98145756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170710)	promoter-TSS (NM_001170710)	46.0	NM_030121	78541.0	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	6.19759426825076	5.62392871621085	5.48736200178849	5.54192274385239	6.15068767839182	5.75439791349566	6.05761128970933	5.65576355923991	0.312777397472454	0.29369434157001	0.606149081959282
Merged-chr18-34932069-4	chr18	34931984	34932184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144866)	promoter-TSS (NM_144866)	-81.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	9.03523879292896	9.30010631591673	9.28910654577167	8.93898582273687	9.26012231925402	9.43215328091313	9.46073673419167	9.15885428882246	0.228884481587988	0.158340787305364	0.445194300031936
Merged-chr4-53350764-4	chr4	53350674	53350874	+	787.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80542.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	4.06895772116309	3.72320661730084	4.25062133372939	4.51702142974586	4.40783528960405	3.72895852717849	4.09942756538417	4.20507014285113	-0.108144994811609	0.826007828051575	0.933214996236359
Merged-chr14-31440906-4	chr14	31440784	31440984	+	922.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4784.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	4.82718949716751	4.48601978156399	4.45663879277778	4.67447656549884	4.51854862183459	4.49646966121676	4.43665118510127	4.36464596807322	-0.36843223983215	0.312742544101842	0.624630357151774
Merged-chr19-60947730-3	chr19	60947631	60947831	+	796.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	ORR1B2|LTR|ERVL-MaLR	57982.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	3.80441248145592	3.75332690972926	4.25103638889964	3.74585290091183	3.71097095090051	4.12664736768026	3.67958450743941	3.95353438381159	-0.0642388397932785	0.892595708418085	0.959816145413343
Merged-chr12-26425272-3	chr12	26425223	26425423	+	927.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10061.0	NM_080563	108089.0	Mm.214932	NM_080563	ENSMUSG00000020642	Rnf144a	Rnf144|UIP4|Ubce7ip4	ring finger protein 144A	protein-coding	3.96811464430309	4.22734146485774	3.63706527612629	3.74754716145727	3.3257365437585	3.38138475024479	3.3240498597587	3.46223650526101	-1.79003093933901	0.000865878134793297	0.011999817796982
Merged-chr9-109095588-3	chr9	109095509	109095709	+	909.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172775, exon 1 of 38)	5' UTR (NM_172775, exon 1 of 38)	173.0	NM_172775	235611.0	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	3.59097270925691	3.26418590558764	3.63808641073367	3.3079064425935	3.3194271898513	3.31891377111649	3.13129558408358	3.32700546794556	-0.623778077769488	0.25179277625007	0.563040416191876
Merged-chr1-191091563-2	chr1	191091471	191091671	+	687.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6843.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	3.35625307377927	3.07912810718233	3.17715439260895	3.25900895007624	3.43639031202334	3.35260925914433	3.2282419849987	3.69518733700931	0.765761697832835	0.154633579765793	0.439914611276954
Merged-chr13-67729134-4	chr13	67729043	67729243	+	993.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145622)	promoter-TSS (NM_145622)	30.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	5.34189481701662	5.00857972647174	5.64503466270184	5.55904223138636	5.60224829532089	5.20998160925627	5.66392290749779	5.75743447498322	0.277206269071867	0.370653872868577	0.674872023556965
Merged-chr8-90909411-5	chr8	90909239	90909439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	CpG	-22910.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	5.14471665938804	5.3617759251473	5.57873452501808	5.24711699627204	5.23726339248826	5.35547231032404	5.15428876486189	5.5501324926936	-0.0135616812154687	0.963704396717239	0.98707104575843
Merged-chr5-103680525-4	chr5	103680425	103680625	+	932.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-24793.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	4.90573784513654	4.55478618743254	4.46445915211465	4.67023338467263	4.99534273617122	4.93638092417117	4.66248902997506	5.12077434490579	0.579025015245047	0.0940295938485212	0.335468520903408
Merged-chr11-17258060-4	chr11	17257955	17258155	+	992.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330649, intron 1 of 4)	ID_B1|SINE|B4	367.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	4.79599586394317	4.27948363084984	4.83332116967812	4.56839264356721	5.00772869428439	5.04095667202152	4.97688761893646	4.75602502396444	0.667678390526476	0.056142740293337	0.247994545819749
Merged-chr2-18677178-2	chr2	18677058	18677258	+	1000.0	f0_balb.idr|f0_c57.idr	TTS (NM_147778)	TTS (NM_147778)	140.0	NM_007552	12151.0	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	4.98939812251336	5.44141634826996	5.68620431441949	5.65597192353448	5.57857959956282	5.81024292939962	5.79480458460285	5.58068233736166	0.350964457425401	0.239872043952024	0.550399004463438
Merged-chr6-21959116-4	chr6	21959049	21959249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311061, intron 4 of 11)	Lx9|LINE|L1	9534.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	6.95007273869231	6.78900866765056	7.00226990905894	7.42674644295557	6.9272232004689	7.08857702480307	6.79373573677429	7.05823563485142	-0.153939459322678	0.494299801042037	0.764997511270898
Merged-chr2-71002670-4	chr2	71002591	71002791	+	976.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 2 of 9)	intron (NM_145524, intron 2 of 9)	15683.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	4.92022874686922	5.43396537960638	5.0324353064572	5.0398757916699	4.9524892960104	5.30922478031868	5.42504694187306	5.22625761037206	0.203157703751986	0.529382140937756	0.785614700149936
Merged-chr9-124056558-4	chr9	124056404	124056604	+	944.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34533.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	4.86310641629847	5.24957794679338	5.09918715753833	5.10285778219522	4.54694428278157	4.9636502237251	5.01151370318884	4.42737114791343	-0.673270515900284	0.0573820474383869	0.251270178690676
Merged-chr9-21436315-6	chr9	21436252	21436452	+	923.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 1 of 19)	intron (NM_001357721, intron 1 of 19)	11444.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	4.25238345747088	4.18347146519566	4.21017231118798	3.97413335452295	4.02590021136642	4.04011553614924	4.05485866210472	4.29176041861417	-0.108654876098905	0.792477620510527	0.919627897475503
Merged-chr5-9087444-3	chr5	9087354	9087554	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-13283.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	4.71238723137236	4.47387410873178	4.79377649149388	5.09705533099302	5.02691245284807	5.07963646620018	5.30096538390088	4.86643591329024	0.52426773956888	0.141813450571392	0.418983048240956
Merged-chr4-70536059-4	chr4	70535940	70536140	+	933.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1112.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	4.49473950647355	4.14918575499949	4.49546649418566	4.15364005312862	4.29067550417097	4.40903922500947	4.62196263335139	4.49252627136189	0.317619043705461	0.41400610642699	0.708838812152508
Merged-chr14-25413744-4	chr14	25413655	25413855	+	905.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45430.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	4.39080711439262	4.34335131329659	4.71666203043913	4.33102221349638	3.74133944938275	4.43560464426519	4.28671977193197	4.00866476054909	-0.77459470995345	0.0785989601266416	0.30332214052038
Merged-chr4-139609178-3	chr4	139609071	139609271	+	705.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 5 of 8)	intron (NM_001205173, intron 5 of 8)	-13723.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	3.54510575669559	3.41587008577673	3.48778956137926	3.12990780064759	3.66589016108953	3.66441296520764	3.95529003044988	3.79907155113917	1.25201911887671	0.0121479943179651	0.0907145708096754
Merged-chr10-70215018-4	chr10	70214902	70215102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304739, intron 1 of 2)	intron (NM_001304739, intron 1 of 2)	10338.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	5.1422117692447	4.91163154391898	5.20852927064367	5.20803265774554	5.45061386302919	5.25046292593583	5.33196602504949	5.51420737262596	0.48430110072326	0.0984381569977828	0.343994301133918
Merged-chr1-64690975-6	chr1	64691019	64691219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038009)	promoter-TSS (NR_038009)	-226.0	NM_001097644	227210.0	Mm.39706	NM_001097644	ENSMUSG00000070871	Ccnyl1	9630037P07Rik|AW554339	cyclin Y-like 1	protein-coding	4.91226182290535	5.01865883502936	4.84302671512639	4.36816182857411	5.23240642773715	4.74092428645915	4.81970401664968	4.46712790880352	0.121196021918866	0.759070097128498	0.905467910117288
Merged-chr8-71528811-3	chr8	71528724	71528924	+	881.4722289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8613.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	3.37706897551144	3.21032264015399	3.03047662219979	3.62503988440253	3.61824490099025	3.55394522658957	3.9783910600975	3.69983273338614	1.20870485080096	0.0390300957246898	0.198529497461004
Merged-chr2-140794251-8	chr2	140794157	140794357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 3 of 18)	RMER17C2|LTR|ERVK	-122781.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	5.54974645175777	5.33174146769594	5.79177357538007	5.13966570801792	4.78791207380011	5.3317793493321	5.02764424589677	4.72582643217257	-0.896415838751121	0.00982810113314262	0.0779100579748255
Merged-chr14-21757008-1	chr14	21756908	21757108	+	571.0	f0_c57.idr	intron (NM_001359953, intron 1 of 5)	B4A|SINE|B4	5456.0	NM_001359953	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	2.25154594280764	2.12490148192851	2.25174657246798	1.92511027224466	2.77537201659992	2.72523245371148	2.53694576844601	2.94391428670407	5.03046085888111	1.72319818703609e-07	7.04511911286857e-06
Merged-chr3-100685685-8	chr3	100685560	100685760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010763)	promoter-TSS (NM_010763)	-187.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	6.31963459137143	6.19035495471119	6.5139327452844	6.02377160921071	5.89492633517271	6.11380512525128	5.99699890111954	5.97876467324501	-0.411866994810432	0.0955941488364898	0.338505344014353
Merged-chr2-161108580-4	chr2	161108500	161108700	+	961.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126509, intron 1 of 35)	CpG	486.0	NM_173368	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	4.52786840932665	4.44167872071073	4.35525508093944	4.78292839032717	4.44576185541178	4.10873150948745	4.7611200192097	4.67802060729393	-0.0641752631775275	0.872741203846317	0.952277127702993
Merged-chr4-129542782-4	chr4	129542696	129542896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008228)	promoter-TSS (NM_008228)	-150.0	NM_008228	433759.0	Mm.202504	NM_008228	ENSMUSG00000028800	Hdac1	HD1|Hdac1-ps|MommeD5|RPD3	histone deacetylase 1	protein-coding	7.70394648751147	7.60753367395894	7.21795592258818	7.43774946384652	7.38164363306299	7.28824393422557	7.42960283467875	7.43287763587149	-0.157406198376229	0.40297503707188	0.700482567249666
Merged-chr5-142910354-4	chr5	142910225	142910425	+	898.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3571.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	3.92947121841999	3.8293485462014	4.37078625704602	4.30895749759442	3.96327506928236	4.05249059494472	3.86111617381468	4.20974749915776	-0.29440992152987	0.511211734289808	0.775237968566043
Merged-chr2-52960918-4	chr2	52960826	52961026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	103058.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	5.97797650923824	5.77271531557307	5.99986161096055	5.87535977836891	5.72623455910271	5.37443803149416	5.88418522163594	6.0754999628602	-0.185101223323257	0.494700750714105	0.765235352278154
Merged-chr16-10987582-3	chr16	10987493	10987693	+	722.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	5528.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	3.22866847175931	3.31923639477785	3.45207803598677	3.20682681397222	3.18644369617403	3.34113672250308	3.33234461969236	3.3979134299993	0.0496438229557376	0.924873027700101	0.972242873959408
Merged-chr3-151742437-3	chr3	151742352	151742552	+	773.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133871, intron 5 of 7)	RMER20B|LTR|ERVK	7507.0	NM_133871	99899.0	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	3.05468354037151	2.76708816783448	2.91408634683173	2.72482235124435	3.36284645867528	3.52642415981734	3.4414439250761	3.55035976882452	2.46451262808148	1.78757223149948e-05	0.000462345944280164
Merged-chr15-6574722-4	chr15	6574527	6574727	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5220.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	3.66525251792054	3.71035705716705	3.28335218773175	3.38992204227321	3.41954894324488	3.4589769648966	3.33353765735319	3.45942121194721	-0.344371082734378	0.507426620530079	0.772768026875638
Merged-chr12-33027351-4	chr12	33027345	33027545	+	887.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65430.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	3.26128661272467	3.24751248384151	3.42426816519755	3.34460362810703	3.22689851006839	3.1850395185902	3.06631695696557	3.42226645120852	-0.33426629822628	0.537920425470392	0.79126455418755
Merged-chr12-76533653-5	chr12	76533629	76533829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039597)	promoter-TSS (NR_039597)	169.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	5.45734834067057	5.43369742640811	5.61136939300022	4.97485987274775	5.42696939369761	5.54802169684991	5.16162112258912	5.14944763641426	-0.0677974457617991	0.832762650791309	0.936091922565215
Merged-chr6-116682447-4	chr6	116682343	116682543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8607.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	7.02494651955169	6.79924845169439	6.88372542774068	6.9545737232145	6.92651904596678	7.12718000310812	7.19291468404875	7.10405245872789	0.229863084754355	0.231257659638808	0.54072900864524
Merged-chr2-163929743-4	chr2	163929633	163929833	+	942.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11050.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	5.48145859405126	5.75976567613746	6.39212312991122	6.268163949303	4.8256604134056	4.69647957085805	4.78289360651826	4.934218545605	-2.19793331633196	2.33482723275933e-10	1.69236932383479e-08
Merged-chr14-78536968-4	chr14	78536881	78537081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164503)	promoter-TSS (NM_001164503)	-121.0	NM_001164503	219181.0	Mm.89413	NM_001164503	ENSMUSG00000022016	Akap11	6330501D17Rik|AKAP220|Gm80|PRKA11|mKIAA0629	A kinase (PRKA) anchor protein 11	protein-coding	7.91197693251151	8.01274655848107	7.85432765638754	7.85133387761211	8.12446062762755	8.1121951914076	8.02393253511889	7.73042011423795	0.131963216448843	0.441518300423329	0.728526235547338
Merged-chr3-95665147-13	chr3	95665115	95665315	+	908.487183	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6494.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	4.1269617890962	3.98520446571917	3.42687970441738	3.50006635237312	3.76082578959154	3.91894491877202	3.93142504814106	4.28119079282818	0.545587394143543	0.285068637790238	0.596861412203535
Merged-chr4-136029572-3	chr4	136029464	136029664	+	996.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7915.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	5.30972933505935	5.239066719772	4.53779238329088	4.58926569415593	4.13562819427613	3.99127193046272	3.91081157044641	3.92397399527571	-2.28586780591686	9.31018877844896e-07	3.28552269242052e-05
Merged-chr5-76853754-4	chr5	76853720	76853920	+	895.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163793, intron 4 of 8)	intron (NM_001163793, intron 4 of 8)	13221.0	NM_001163793	320827.0	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	3.86948333002429	4.30480641435073	3.81649440418604	4.08679379805235	3.98437057205848	3.82121237626595	4.09024511033598	3.81442046492933	-0.285682460593088	0.52480008679212	0.783101934504021
Merged-chr5-92506429-6	chr5	92506365	92506565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007644)	promoter-TSS (NM_007644)	-808.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	5.72939804363807	5.591397806098	5.73040022306739	5.62565962069008	5.81085242488988	5.57732815113133	5.62698909871178	5.67695027872971	0.0327422395918873	0.898727320101407	0.962303043708153
Merged-chr7-118766228-4	chr7	118766112	118766312	+	922.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 8 of 30)	intron (NM_027815, intron 8 of 30)	25941.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	4.08814435802793	4.29810409252721	3.82136747982228	4.35328370080237	4.06618615819772	4.05720886698598	4.32998928222345	4.22359168628166	0.00103783216808814	0.998073741815067	0.99910121404386
Merged-chr6-97442813-4	chr6	97442719	97442919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	B1_Mur1|SINE|Alu	16467.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	5.55739658387851	5.34795343314628	5.29537421125341	5.60829913478315	5.39707196796507	5.62278513767433	5.67848476057248	5.55445174549258	0.153512730107793	0.58184365684612	0.816420227529328
Merged-chr6-50836132-3	chr6	50836041	50836241	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60026.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	3.8156813544143	3.40259661591192	3.5135048455654	3.7746840270771	3.91422256182797	4.36005845512923	3.95220257750707	4.44385226253241	1.47110512134384	0.00279863482075775	0.0302603718527596
Merged-chr13-24802543-4	chr13	24802472	24802672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024473, exon 1 of 5)	5' UTR (NM_024473, exon 1 of 5)	915.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	6.0162365264659	6.17806934543919	6.16685942991006	6.53604821257985	6.43076388802795	6.10113868523269	6.13534736023825	6.20209455824424	-0.0400452518735413	0.873193876944748	0.952435247820927
Merged-chr7-19342809-4	chr7	19342717	19342917	+	896.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2254.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	4.50221903005212	4.48925828809506	4.26998389429817	3.82076078919576	5.10685568916886	4.83642944986504	4.67766085032241	4.62201949842859	1.21740725602081	0.00278956079390421	0.0301897746311856
Merged-chr9-122285550-3	chr9	122285417	122285617	+	892.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271873, intron 1 of 12)	intron (NM_001271873, intron 1 of 12)	8906.0	NM_001271873	102566.0	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding	3.48421030866675	3.4787206373825	3.32175832641189	3.78569957454203	3.07453754482122	3.10408109642729	3.25101944097146	3.32003431789086	-1.30613861655331	0.0208362936204861	0.131574391732841
Merged-chr10-7232254-2	chr10	7232154	7232354	+	672.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-20017.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	3.17574656306674	3.31430593592958	3.59476009335126	2.98407975690441	3.17021350230703	3.28915824620211	3.03687460362088	3.34767946351703	-0.236343478581415	0.685767291809712	0.871615836286623
Merged-chr11-3163141-3	chr11	3163068	3163268	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 9 of 32)	intron (NM_030207, intron 9 of 32)	30295.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.26363353954737	5.15927442280956	5.3138830594596	5.44921826240535	3.74506629666828	4.076332668176	3.78692786403253	4.06769832436544	-3.47346249116389	1.56251404608392e-14	2.33651653962621e-12
Merged-chr9-65575992-4	chr9	65575892	65576092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 1 of 5)	intron (NM_153119, intron 1 of 5)	4095.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	6.63022180933935	6.54511199144411	6.43221810159867	6.71081620548316	6.56243329885937	6.37468775669222	6.61273806391309	6.97274476477006	0.0826319015497503	0.716294718080051	0.886543935632411
Merged-chr2-152029392-4	chr2	152029281	152029481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29515.0	NM_001164820	69698.0	Mm.258262	NM_027172	ENSMUSG00000027463	Slc52a3	2310046K01Rik|RFT2	solute carrier protein family 52, member 3	protein-coding	6.14450214395629	5.92861333711494	5.87655374638175	6.25791073593981	6.13130702843082	6.14971616877482	6.36778155531763	6.44443829465069	0.306706656231967	0.210219893009391	0.514660582118576
Merged-chr2-136680013-1	chr2	136679913	136680113	+	875.25	f0_balb.idr	Intergenic	Intergenic	-33437.0	NM_011428	20614.0	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	4.40723925574798	3.85637097936103	4.03212060352132	4.38311426519551	3.10280527709858	3.55201862711922	3.41964762925649	3.49657198678375	-2.66000792683154	3.0583288967455e-06	9.60674283060229e-05
Merged-chr5-105506630-3	chr5	105506535	105506735	+	866.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	-12836.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	3.32975564125735	3.47994589102812	3.89045926581997	4.07988333474266	2.78337442325583	2.87455676932509	2.91728548721962	2.92422178558502	-4.25013503426134	1.13123514806583e-06	3.91635148853005e-05
Merged-chr17-57400993-2	chr17	57400893	57401093	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 2 of 22)	L1VL2|LINE|L1	42307.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	2.32593428588821	2.41661906650105	2.40520213884404	2.51592834845747	2.74128135165698	2.85270457924175	2.84559865627059	2.80065697526958	1.95445708144106	0.00683033683216095	0.0598297496156023
Merged-chr4-12557286-3	chr4	12557186	12557386	+	949.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-349551.0	NM_173746	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	3.91328265424677	3.75839419979304	4.52929504052882	4.10499015175442	3.62094233535398	3.6964736018222	3.56402957261396	3.91150729498346	-1.15165895578512	0.0205925341073785	0.130556336085249
Merged-chr1-34484634-4	chr1	34484533	34484733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13779.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	5.4536262741706	5.20199792229176	5.30489611765121	5.35576377490843	5.67534081711602	5.70980408877285	5.30986987670401	5.65834189234243	0.465674599457767	0.0953724813041941	0.337972610114071
Merged-chr11-49076509-4	chr11	49076411	49076611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271677)	promoter-TSS (NM_001271677)	-76.0	NM_001271677	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	6.18430245337536	6.84759562412496	6.65771814012892	6.74042264285087	6.67035062765825	6.78764156829094	6.54596248320466	6.68290319338521	0.0462508372733566	0.840517613663421	0.939305852792169
Merged-chr7-80172793-3	chr7	80172690	80172890	+	851.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-14051.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	3.39677860756894	3.86100838849569	3.39719391446259	3.47347630038382	3.70645479213237	3.51128455346217	3.32426224502262	3.61663401827622	0.0158190486158302	0.97582348546794	0.991372171924056
Merged-chr14-36316881-3	chr14	36316782	36316982	+	697.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	221917.0	NM_175008	218921.0	Mm.212464	NM_175008	ENSMUSG00000096405	4930474N05Rik	-	RIKEN cDNA 4930474N05 gene	protein-coding	4.09660754640522	3.76325467506704	4.00982867839176	4.1023781137763	3.75024030625557	3.49823351914839	3.94655894627116	3.96132555957486	-0.568988896739064	0.223691602003807	0.531783993154169
Merged-chr5-142938557-3	chr5	142938464	142938664	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21791.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	4.21215239673487	4.59973840896972	3.76056056162385	4.22793783919452	4.21904645447129	3.88164337395131	3.8046136440511	3.81715674005114	-0.740080654272622	0.125678459262181	0.393683362752401
Merged-chr2-30965785-4	chr2	30965681	30965881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144884, intron 2 of 4)	URR1A|DNA|hAT-Charlie	2137.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	6.50346383586657	6.48135388818852	6.15626804854	6.0652820539981	6.59563248669068	6.26921286196608	6.5781431525342	6.27251427788495	0.210187496289953	0.386130914328915	0.687471231171812
Merged-chr9-61590116-1	chr9	61590016	61590216	+	542.0	f0_balb.idr	Intergenic	Intergenic	217750.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	3.48343764513462	3.20303493535695	3.76166387557572	3.25562096220724	3.21196707868725	3.43310032743214	3.24647503148045	3.19359603155089	-0.587254345258739	0.293661757946181	0.606128617967717
Merged-chr9-14769227-6	chr9	14769110	14769310	+	896.14447	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029306, intron 1 of 3)	intron (NM_029306, intron 1 of 3)	1820.0	NM_029306	69325.0	Mm.440453	NM_029306	ENSMUSG00000031927	1700012B09Rik	1700007P19Rik	RIKEN cDNA 1700012B09 gene	protein-coding	4.56833796571791	4.29999498328104	4.41604643716503	4.64185802994216	4.02656497232964	4.27114231229502	4.17651265925024	4.19190022612106	-0.818724847960651	0.0379660100189515	0.194982704931354
Merged-chr16-32324029-9	chr16	32323982	32324182	+	862.5277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8170.0	NM_177633	224111.0	Mm.31275	NM_177633	ENSMUSG00000053774	Ubxn7	A630090P18|AI196514|Ubxd7|mKIAA0794	UBX domain protein 7	protein-coding	3.99044452372651	4.05956681506883	3.8424072572399	3.9314252112529	3.9349693119285	3.96277471597087	4.06299723272099	3.67274424022855	-0.113353690161329	0.795701393744096	0.920897975671128
Merged-chr10-75675846-4	chr10	75675745	75675945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 29 of 36)	intron (NM_172549, intron 29 of 36)	-31837.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	5.95831255763152	5.61730998768651	5.57570741169025	5.81905676282348	5.70256194337205	5.60574904022268	5.98898477037198	5.62657718795042	-0.0238520043253245	0.929131474383849	0.974317157505369
Merged-chr10-77279045-4	chr10	77278931	77279131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19731.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	5.41194131376348	5.42202675720197	5.38438201934688	5.3108859752956	5.53441543916532	5.19908854314526	5.35761466117587	5.32171374813077	-0.0125079811301265	0.964669780953265	0.98746538769534
Merged-chr7-19508563-6	chr7	19508449	19508649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177692)	promoter-TSS (NM_177692)	-121.0	NR_138583	67091.0	Mm.44213	NM_025960	ENSMUSG00000002043	Trappc6a	1810073E21Rik|4930519D19Rik|AI480686|TRS33|mhyp	trafficking protein particle complex 6A	protein-coding	5.56031405308991	5.98018679976464	6.3118926190118	5.64968058371942	5.76335928838172	5.85024221478875	5.77137139406956	5.84434580107766	-0.150654440347808	0.59539532953698	0.823897588574842
Merged-chr17-3115753-4	chr17	3115647	3115847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134123, intron 1 of 19)	intron (NM_134123, intron 1 of 19)	775.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	6.3034952980439	6.37966898346921	6.49924108036902	6.4670693920318	6.32628236776718	6.36184455772392	6.54503040289442	6.67718460341961	0.091704559370462	0.676170441437319	0.867068661286877
Merged-chr15-87074576-8	chr15	87074496	87074696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-469703.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	5.30556469296004	5.08869975920863	5.36320724820222	5.03843677124769	5.16926782149674	5.42006817363208	5.02585707088999	5.21270255506592	0.0349923713706978	0.908775690463181	0.966100563913989
Merged-chr18-38250378-4	chr18	38250370	38250570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015475)	promoter-TSS (NR_015475)	95.0	NR_027904	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	7.13616478328602	7.02639217895552	7.46742821168542	6.98671327462532	6.71046805356791	7.31411789866659	7.17890635888815	6.98696474400365	-0.140391357086162	0.533942168212586	0.789042708189764
Merged-chr17-71186866-3	chr17	71186768	71186968	+	855.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	PB1D7|SINE|Alu	2890.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.16766014557263	3.10197464169475	3.16808681370565	3.08566102326714	3.02380636268379	3.03272685732185	2.98099883203745	3.05110604171358	-0.437440589943075	0.43843954651905	0.726385226396654
Merged-chr11-120057939-3	chr11	120057824	120058024	+	711.799988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-10779.0	NM_007377	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	2.97466437797276	3.08995503848158	2.89070749234395	2.37237621645078	3.68266622204701	4.04144501566438	3.93068341979224	4.06551790177094	4.33358622805858	0.000614452291016065	0.00910978954847584
Merged-chr4-8598596-2	chr4	8598507	8598707	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021518, intron 6 of 7)	intron (NM_021518, intron 6 of 7)	62963.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	3.55912932325616	3.08984402775943	3.13108069178625	3.34725786119171	3.27904050353324	3.24142683459028	3.18194092979231	3.25077262013848	-0.207873375721776	0.707653845542336	0.882529695648857
Merged-chr1-24550705-3	chr1	24550605	24550805	+	906.4722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 4 of 50)	intron (NM_007733, intron 4 of 50)	36732.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	4.49474209702761	3.90698494184671	4.53143082648852	4.15752726421276	3.86451057291657	4.24218152480475	4.43702187114511	3.95699090551732	-0.371654373846119	0.414370164085467	0.709044594374843
Merged-chr10-127535576-2	chr10	127535479	127535679	+	957.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-1020.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	4.71088187424279	4.56631603020972	4.94282305163008	4.27806276901518	4.20224951957293	4.64870599330314	4.40871724390367	4.7441993633293	-0.272274392541948	0.50192131189055	0.769448365511349
Merged-chr10-43758385-4	chr10	43758282	43758482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040581, intron 1 of 3)	intron (NR_040581, intron 1 of 3)	12224.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	5.98972538073839	5.64279071551172	6.38532528256065	6.44029734475498	5.71839749127747	5.81680061557286	6.16236878130148	6.09222755932035	-0.323270300361308	0.268274856339054	0.580076430005696
Merged-chr8-35826048-2	chr8	35825948	35826148	+	802.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_027998, exon 1 of 1)	exon (NM_027998, exon 1 of 1)	511.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	3.14740430934219	3.12734114197931	3.25565047853283	2.86432898619327	2.93273814940818	3.076644339265	2.89182223271937	3.08867277336647	-0.413511810010838	0.48871970427645	0.761377570765248
Merged-chr4-150035504-4	chr4	150035399	150035599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26476.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	5.61534895856501	6.11550844860411	5.5613296024004	5.82618756261536	5.9434795653235	5.49434073470263	5.83038158349435	5.24093967672345	-0.223197321076511	0.466404858309098	0.746420287776482
Merged-chr1-65195678-3	chr1	65195596	65195796	+	720.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011086, exon 5 of 42)	exon (NM_011086, exon 5 of 42)	9011.0	NM_011086	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	3.66100218335523	3.69007921615958	3.80740613949745	3.56832087154039	3.33981958273204	3.4902682771339	3.9595588217965	3.23900394277442	-0.456640490388827	0.395319469146997	0.694193627434107
Merged-chr7-102241844-4	chr7	102241750	102241950	+	802.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	8268.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	4.42965049134695	3.72153869664058	4.15610614163556	4.02881164250454	4.07437888755669	3.98386947703924	4.04760958858909	3.91355494161527	-0.243924010151408	0.586977646994583	0.819013564908904
Merged-chr4-152432567-2	chr4	152432467	152432667	+	716.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252655, intron 2 of 14)	intron (NM_001252655, intron 2 of 14)	16288.0	NM_001252655	16498.0	Mm.388924	NM_010598	ENSMUSG00000028931	Kcnab2	F5|I2rf5|Kcnb3|kv-beta-2	potassium voltage-gated channel, shaker-related subfamily, beta member 2	protein-coding	2.5778508916846	2.43109945836946	2.57820991104986	2.26027125365517	2.4514844658608	2.26549866530981	2.44593864804797	2.31671428835695	-0.497722671748837	0.502232276642965	0.769575778516236
Merged-chr17-3160864-4	chr17	3160760	3160960	+	977.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134123, intron 4 of 19)	CT-rich|Low_complexity|Low_complexity	45888.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	5.2291574076076	5.17358233398037	5.34605004275164	5.44506682700109	4.95361742763098	4.89505786724986	5.20419644226273	5.09882218526239	-0.509950449690951	0.0941049668965763	0.335575592411038
Merged-chr14-122608504-4	chr14	122608394	122608594	+	932.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 6 of 24)	intron (NR_153443, intron 6 of 24)	74166.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	4.08691860830766	3.78499399939973	4.23151126805364	4.852042588051	4.22872245446907	3.86488950491284	4.34078961903866	4.4755325245422	-0.169119431394475	0.73832208589937	0.896701754212797
Merged-chr19-4855173-4	chr19	4855091	4855291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019861)	promoter-TSS (NM_019861)	62.0	NM_019861	56464.0	Mm.29561	NM_019861	ENSMUSG00000083282	Ctsf	AI481912	cathepsin F	protein-coding	5.73730597441343	6.04038487752811	5.49812091555204	5.56108523696683	5.68509476825636	5.88805736279674	5.58225387728225	5.52329364775346	-0.0781308334205081	0.781056725225166	0.914773964552732
Merged-chr11-113339908-3	chr11	113339801	113340001	+	957.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 6 of 9)	intron (NM_027216, intron 6 of 9)	-130232.0	NR_040276	319871.0	Mm.383743	NR_040276	ENSMUSG00000085421	4732490B19Rik	-	RIKEN cDNA 4732490B19 gene	ncRNA	3.56553286958289	3.42468020938583	3.56606553253193	3.5250699743423	2.97596515374682	3.34203954996988	3.3952494542302	3.34972721411672	-0.912927258778776	0.0959555333186834	0.339379821420649
Merged-chr7-113688871-2	chr7	113688771	113688971	+	814.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77127.0	NM_145584	233744.0	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	3.50918997427789	3.43918490708554	3.45076248454604	3.78637839667425	3.68142944636999	3.36932805213133	3.92600389854132	3.71938310702489	0.377800485456974	0.464482540223082	0.745464276626538
Merged-chr13-119488009-4	chr13	119487931	119488131	+	936.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039244)	promoter-TSS (NM_001039244)	-8.0	NM_001039244	633640.0	Mm.46679	NM_001039244	ENSMUSG00000074634	Tmem267	EG633640|Gm7120	transmembrane protein 267	protein-coding	4.89894061579354	4.33824149327044	4.4832783284559	4.94972275585146	4.5397780780682	4.36758798960557	4.84330322065419	4.83026678567223	-0.098294326374964	0.802830734391826	0.923936032101707
Merged-chr6-124917316-4	chr6	124917215	124917415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152158, intron 1 of 1)	(CGGGG)n|Simple_repeat|Simple_repeat	452.0	NR_152158	442825.0	Mm.446713	NR_152158	ENSMUSG00000055818	A230083G16Rik	-	RIKEN cDNA A230083G16 gene	ncRNA	6.06856021472938	6.35981751306561	6.2553326585297	6.43339433518257	6.17598819266748	6.35247059402811	6.35032165099575	6.42934135793694	0.0357727097254596	0.875840414177999	0.953343358207453
Merged-chr8-83749500-1	chr8	83749400	83749600	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-8189.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	5.45466531132511	5.32791407033394	5.63912511484957	5.29166702208808	5.59698833789656	5.6842861173368	5.45600705630496	5.23736352110448	0.146780801346727	0.609175300398337	0.83089280248568
Merged-chr16-10452711-4	chr16	10452606	10452806	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5344.0	NM_001013778	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	5.95820385983067	5.45971104423503	5.84930428051017	6.25267816451627	6.10019362488099	5.53002498457393	5.38852520194963	5.74976413799501	-0.305897147904255	0.336329921938456	0.646375426192914
Merged-chr17-53568398-4	chr17	53568242	53568442	+	950.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151733, intron 1 of 16)	intron (NR_151733, intron 1 of 16)	1371.0	NR_151733	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	4.66737136359491	4.60203387171534	4.62837426251736	5.12009449418224	4.61698223506464	4.43947087219723	4.92344188247121	4.49838826141083	-0.335901605333274	0.379750929558287	0.682256778851632
Merged-chr7-139296778-4	chr7	139296676	139296876	+	887.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48294.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	4.33214222503925	4.15481133485487	4.13825974364481	4.62600918513002	4.22401630055757	4.21140322176949	4.66297736925835	4.84252811568776	0.383847549348815	0.373348471057111	0.676972890622191
Merged-chr10-43504525-4	chr10	43504428	43504628	+	982.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359600, intron 3 of 3)	intron (NM_001359600, intron 3 of 3)	11363.0	NM_001359600	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	5.75595638204046	6.5760667297618	5.45909423315245	5.36301429604724	5.80385464817825	5.95643449069316	5.3696117807649	5.10905781153718	-0.461779807636414	0.234183630562267	0.543954987592731
Merged-chr8-79059500-4	chr8	79059392	79059592	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 1 of 14)	intron (NM_001294279, intron 1 of 14)	31055.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	5.31956135830529	4.90035101224434	5.50201825612086	6.17329497750903	4.87614094236108	4.40158891378859	4.70679010706954	4.48713005930799	-1.78520653965384	2.1738943355648e-05	0.000548513381464612
Merged-chr5-23826567-4	chr5	23826484	23826684	+	875.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	17561.0	NM_025394	66169.0	Mm.291868	NM_025394	ENSMUSG00000028998	Tomm7	1110020J08Rik|AW047273|Tom7	translocase of outer mitochondrial membrane 7	protein-coding	4.44231726388844	4.60339958332117	4.52217178367473	4.18235427147269	4.07666816773484	4.34829420827462	4.24963671291931	4.5191835638167	-0.321611371395475	0.424407545722845	0.716123917662497
Merged-chr7-45801575-4	chr7	45801483	45801683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005511, intron 15 of 15)	intron (NM_001005511, intron 15 of 15)	12733.0	NM_011181	19158.0	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	5.72846594334691	5.80278254274076	5.5431367894102	5.49545083006308	5.8633348073156	5.85400169504742	5.59803256198603	5.93033085544138	0.297201404423651	0.256996594658817	0.568749690044176
Merged-chr2-17740457-4	chr2	17740350	17740550	+	820.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9382.0	NM_028757	74103.0	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	3.454978925947	3.34056341114453	3.6793918059975	3.47466497331017	3.63545993608636	3.57188852742651	3.8078891707707	3.99350327343874	0.842054307814709	0.0842620505424365	0.315800784307081
Merged-chr5-125465829-4	chr5	125465731	125465931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10042.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	8.14325359625889	8.40824858836971	7.80596960901467	8.05987442500171	8.24766936883944	8.3406902513023	8.33607302862827	7.84054958300211	0.107188329552826	0.59016149804789	0.820794336760513
Merged-chr5-77267228-4	chr5	77267132	77267332	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011263, intron 1 of 3)	intron (NM_011263, intron 1 of 3)	1738.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	5.69993426933119	5.94905029100732	5.96108532530808	5.75809405522626	6.01354864891232	6.19699589183124	5.67212007129649	5.49876790929127	0.0548914492406421	0.843382032491325	0.94051340619634
Merged-chr5-136140172-4	chr5	136140086	136140286	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028070, exon 3 of 3)	exon (NM_028070, exon 3 of 3)	1405.0	NM_028070	72041.0	Mm.294725	NM_028070	ENSMUSG00000039754	Alkbh4	2010004B12Rik|Abj4	alkB homolog 4, lysine demethylase	protein-coding	5.71732869194976	5.44833013173368	5.84958352950184	5.50003845277842	5.32696661591122	5.04787656093977	5.59389379986548	5.34117680613338	-0.495761687983971	0.0946610320791943	0.336658219364693
Merged-chr4-106865516-4	chr4	106865367	106865567	+	925.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46003.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	3.90031349504334	3.79224704521781	3.74673599352042	3.95284511143743	4.03419185881024	3.74986993631707	3.78504188294138	3.99175290899384	0.12687254922781	0.775595057645886	0.912391634160948
Merged-chr17-35125288-4	chr17	35125196	35125396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001128597)	TTS (NM_001128597)	-1106.0	NM_033477	114585.0	Mm.42070	NM_033477	ENSMUSG00000043311	D17H6S53E	G4|NG34	DNA segment, Chr 17, human D6S53E	protein-coding	5.77003767075907	5.93530793272396	5.61697650110026	5.64487291659875	5.78255723266441	5.99175536145555	5.58899758331192	5.81445247874373	0.091844973385965	0.725196147782063	0.890775427374647
Merged-chr14-66257826-4	chr14	66257725	66257925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	23227.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	6.86714100035197	6.50814981044301	6.65770107193866	6.64095042998498	6.52641050472144	6.94937598619396	6.85904694728279	6.49039468776585	0.0629373374922698	0.778258011758614	0.913666947368735
Merged-chr11-89001827-4	chr11	89001713	89001913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	2410.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	6.76559356492445	7.09301365417411	7.14559957598011	7.18736445601747	6.50277653387333	6.38199533508642	7.09873343962848	6.99033597515887	-0.399907051788496	0.100093338124318	0.347137770422387
Merged-chr13-55528597-4	chr13	55528509	55528709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013739)	promoter-TSS (NM_013739)	-71.0	NM_013739	27261.0	Mm.33910	NM_013739	ENSMUSG00000035711	Dok3	AI450713|Dokl	docking protein 3	protein-coding	6.10073861902766	5.81285929715055	5.91155009760293	6.07804658290763	5.86613308218453	5.9175130958814	6.01067451602413	5.83701485889459	-0.126804315416914	0.602794220252499	0.827826670564199
Merged-chr6-29198749-4	chr6	29198666	29198866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13531.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	5.29242333854454	5.46209658503953	5.2300947038214	5.3828659482711	5.53304134694359	5.15976111743661	5.56554103405082	5.28968713507569	0.101347587689827	0.726130995403837	0.891025770427008
Merged-chr1-65113691-4	chr1	65113587	65113787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175293, intron 5 of 7)	intron (NM_175293, intron 5 of 7)	9527.0	NM_175293	98303.0	Mm.348057	NM_175293	ENSMUSG00000044816	D630023F18Rik	AI314969	RIKEN cDNA D630023F18 gene	protein-coding	7.46061050930225	7.5283358616201	7.62678612407942	7.87879450590997	7.57567571745178	7.52698207327694	7.78686743516398	7.76717008473643	0.0294425862011851	0.875465505276153	0.953217111662346
Merged-chr18-34855446-4	chr18	34855346	34855546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5761.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	5.84739618448212	6.88793159138018	6.6360215577772	6.27975744415257	6.64417706802072	6.60045277004024	6.60206989690479	6.70425504853786	0.245683512087498	0.362498711947418	0.66767488207285
Merged-chr1-144283505-3	chr1	144283398	144283598	+	801.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34394.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	3.66391634789203	3.67105552907349	3.95838219752072	4.12376110397116	3.54290812217449	3.47034004902625	3.75454295101049	3.81760192616722	-0.686748012967012	0.165960386973036	0.456928587863273
Merged-chr3-8959115-3	chr3	8959025	8959225	+	691.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	5021.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	3.46199863271041	3.51885236648386	3.51643603572919	3.67389671345117	3.32802484132201	3.11547664964864	3.50235297751499	3.61580128697586	-0.502607077229304	0.344225513764077	0.652715324317044
Merged-chr2-167988417-4	chr2	167988323	167988523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 13 of 21)	intron (NM_001080708, intron 13 of 21)	22170.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	5.06512027249517	5.05544812108974	5.7112095005271	5.49318307844492	4.99333286939425	5.24430480674507	5.27285858470323	5.66251742440343	-0.0997469982720864	0.769327651267402	0.909742530773464
Merged-chr6-72940659-3	chr6	72940558	72940758	+	860.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17574.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	3.46605706817401	3.32859300248004	2.99596659526406	3.15680590433572	3.24899487107874	3.2413259597789	3.4515310900076	3.19121666549549	0.15533860923442	0.779564775441634	0.91404024496615
Merged-chr17-32966241-3	chr17	32966145	32966345	+	984.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033585)	promoter-TSS (NR_033585)	414.0	NM_153063	224691.0	Mm.328953	NM_153063	ENSMUSG00000053600	Zfp472	KRIM-1|Krim-1A|Krim-1B|Krim1	zinc finger protein 472	protein-coding	4.97708231164515	4.55362132286464	4.94369435494318	5.22027782564852	4.8803734604191	4.85182645737539	4.98682074387766	4.97454415056201	-0.0763569020617534	0.825323597446303	0.933075791409626
Merged-chr16-95955450-3	chr16	95955340	95955540	+	935.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-26363.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	3.49636627162771	3.37283178822732	3.25541539797556	3.64665209978776	3.69105872869104	3.49513718964989	3.77339362148048	3.37996947348505	0.433242853875624	0.407311455688785	0.703609042149807
Merged-chr2-6728376-4	chr2	6728279	6728479	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	L1_Mus2|LINE|L1	-6717.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	5.2067898411045	5.10249229233745	5.11254337832306	4.60615692030888	5.27867184233301	5.28662925581298	5.24100854092491	5.14151360163384	0.444940881641046	0.173975880674363	0.46821798285392
Merged-chr2-60843250-4	chr2	60843163	60843363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	38175.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	7.31437797173068	7.4186177100185	6.96039545807623	7.20897061126646	7.19913809099471	6.73784965236881	7.23872989234079	6.94216733719344	-0.252785432782602	0.236116125195039	0.546101444075659
Merged-chr14-77850068-4	chr14	77849986	77850186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025384, intron 3 of 5)	intron (NM_025384, intron 3 of 5)	24831.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	8.26556886093013	8.22301948067216	8.6167351919618	8.6207698392088	8.4473420187429	8.28896293627435	8.55043835997372	8.42056225412453	-0.0233369371226486	0.893174376629515	0.960067775059052
Merged-chr6-134642041-4	chr6	134641916	134642116	+	908.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026371, intron 1 of 3)	intron (NM_026371, intron 1 of 3)	1076.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	5.94181491938888	6.11212905166149	5.90304291415049	6.31993558754704	4.7715534810249	4.77171072381868	4.70826112629431	4.95411860377733	-2.3314710956425	3.62481358271491e-14	5.14991229549031e-12
Merged-chr6-125071284-4	chr6	125071248	125071448	+	979.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163268)	promoter-TSS (NM_001163268)	71.0	NM_001163268	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	4.53055374620883	4.91331424194122	4.88024752767337	4.90287044611854	4.79324938255829	4.36261015556896	4.51102423829007	5.03570644484881	-0.238354537915865	0.523105853534662	0.782359002463945
Merged-chr2-166289433-4	chr2	166289331	166289531	+	840.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033467, intron 2 of 2)	intron (NR_033467, intron 2 of 2)	15523.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	4.14763349888979	4.63016684939527	4.79308259407326	4.64863259218391	4.1819774667162	4.04608700094875	4.32302745800313	4.54707133580988	-0.68343007812771	0.0977258053363805	0.342552384075643
Merged-chr10-8779065-2	chr10	8778965	8779165	+	929.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	B3A|SINE|B2	107005.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.85584645963047	3.50578501320664	3.14213756092042	3.17927448496183	3.32129929250455	3.6482252897831	3.36433826919089	3.20362997450066	0.710963510197979	0.234783481096214	0.544671297409607
Merged-chr9-35062325-4	chr9	35062288	35062488	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	RMER6B|LTR|ERVK	-54340.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	4.20639556357555	4.32395473993705	4.37769101448731	3.79927633303683	4.5386523339816	4.4663705377396	3.88476778299957	3.95407057596945	0.154396171902741	0.740912929848262	0.89809586945461
Merged-chr12-73534766-3	chr12	73534661	73534861	+	661.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11634.0	NM_178715	238257.0	Mm.251196	NM_178715	ENSMUSG00000034435	Tmem30b	9130011B11Rik	transmembrane protein 30B	protein-coding	3.49585588365922	3.17228415384381	3.28399943261144	3.20982407691368	3.30831143589765	3.45375220332722	3.1526256972043	3.33888223858615	0.0974863233192029	0.855459147416436	0.945640332561297
Merged-chr7-114922389-3	chr7	114922307	114922507	+	789.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26243.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	3.73073581445717	3.4948868625165	4.00549248736648	3.69496640823315	3.65568771961648	3.85060196117168	3.5549314875781	3.56643208404739	-0.238876290795595	0.623323423606942	0.838941930944268
Merged-chr6-125645020-2	chr6	125644920	125645120	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 28 of 51)	L1MA5A|LINE|L1	-45399.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	3.194326589766	3.1925994043393	3.25335531300954	3.42050445132693	3.30832553917647	3.17713244888494	3.34967179471246	3.19315722841461	-0.0637050503187722	0.906145482842073	0.965212549756255
Merged-chr14-52279106-1	chr14	52279006	52279206	+	1000.0	f0_c57.idr	promoter-TSS (NM_023434)	promoter-TSS (NM_023434)	-40.0	NM_023434	268741.0	Mm.246237	NM_023434	ENSMUSG00000016831	Tox4	5730589K01Rik|A630040M18|AA410149|LCP1	TOX high mobility group box family member 4	protein-coding	7.16392658447897	6.85175579938501	6.53752164541984	6.5294084207342	7.31276109216761	7.07416253309649	7.31193336712739	7.22429373878076	0.623403159877881	0.00505881545683421	0.0479214034338571
Merged-chr13-63240435-3	chr13	63240353	63240553	+	896.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	424.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	3.8325433085163	3.86457446355759	4.02705655845813	4.02257527094814	3.99755421254891	3.65761844497724	4.00937720411242	3.93143519262377	-0.0904900926109948	0.837736902765803	0.938459467190736
Merged-chr1-92179843-4	chr1	92179753	92179953	+	931.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 1 of 26)	CpG	488.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	4.73196870998894	4.35929644621851	4.06632525530723	4.44751341394514	4.25609085391505	4.13605444894308	4.67692125151044	4.26540696399772	-0.170238835434391	0.684023961094747	0.870534812472295
Merged-chr12-80895351-4	chr12	80895206	80895406	+	891.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29141.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	4.09809832282952	4.38401628322154	4.19454758149342	4.26147234315117	4.36255549481691	4.17099771389911	4.26492886070795	4.23745326289331	0.0575677385236773	0.882738165334273	0.955814918609989
Merged-chr2-117996894-4	chr2	117996779	117996979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	114323.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	6.68367754567632	6.78092768830047	6.70022130330285	6.689440106293	6.83096023751677	6.86181618329065	7.15157535380491	6.89282127163695	0.316231587461597	0.111586655901721	0.369149776000587
Merged-chr10-20948446-2	chr10	20948346	20948546	+	972.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-4101.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	3.00205945064032	2.94710742613863	2.94166663496145	2.69078044938838	2.81289965452898	2.7733907264922	3.25421452287503	3.0588016172696	0.405025800878836	0.518634040704957	0.779675989312394
Merged-chr18-60978476-4	chr18	60978369	60978569	+	968.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177407, intron 15 of 17)	intron (NM_177407, intron 15 of 17)	14915.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	4.99052806303551	4.67223254179247	5.08459241307512	4.63250003625703	4.5313176425165	4.75372955242202	4.99838305459454	4.92179005609019	-0.0797116071175711	0.82405431466371	0.932476232435989
Merged-chr15-86277559-4	chr15	86277445	86277645	+	961.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358062)	promoter-TSS (NM_001358062)	-130.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	5.13989699853517	5.22591709928084	5.0027994218396	5.47142852903207	5.07969312842651	4.98635057920666	5.32430538916277	5.20094119537636	-0.165604643721661	0.598639461205071	0.825987886019831
Merged-chr10-45960446-4	chr10	45960353	45960553	+	818.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152749.0	NR_040624	320363.0	Mm.123343	NR_040624	ENSMUSG00000110874	D030045P18Rik	-	RIKEN cDNA D030045P18 gene	ncRNA	3.84966107439824	3.80376200596478	4.55581745442816	4.50059796748736	4.01684795038433	3.72851966006884	4.03709566437243	3.73274061295066	-0.895161286269216	0.0736740505596508	0.292391705870387
Merged-chr12-40082585-3	chr12	40082477	40082677	+	903.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009132, intron 5 of 13)	intron (NM_009132, intron 5 of 13)	-44590.0	NM_001039515	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	3.63496138973747	3.44834129699784	3.43328712040459	3.48568398758167	3.30178536919738	3.49017222405892	3.36453987178381	3.2555610863822	-0.523289696305224	0.307169847686354	0.619358168218558
Merged-chr3-129823490-4	chr3	129823399	129823599	+	762.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009102)	promoter-TSS (NM_009102)	-994.0	NM_009102	20132.0	Mm.278758	NM_009102	ENSMUSG00000028012	Rrh	-	retinal pigment epithelium derived rhodopsin homolog	protein-coding	4.47687997193494	4.18202127667151	3.95644357163619	4.37738412590311	4.24463835126723	3.90446272734322	4.09087863841813	4.242085001348	-0.343874572225104	0.41959189476526	0.712698866070656
Merged-chr6-86497450-4	chr6	86497355	86497555	+	947.326416	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-9228.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	4.64422256370227	4.93239593665493	4.4001382540309	4.34814905306946	4.56725273564107	4.57508791992352	4.18937381800989	4.44152721976119	-0.316333217079218	0.426633679890914	0.71807421851396
Merged-chr9-30480666-4	chr9	30480543	30480743	+	974.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53314.0	NM_028874	102607.0	Mm.35084	NM_028874	ENSMUSG00000031993	Snx19	3526401K03Rik|AI195321|AI848208|mKIAA0254	sorting nexin 19	protein-coding	5.46233265470281	5.3814870878518	4.94893394950346	5.85815106116032	5.29662416381056	5.49013566604249	5.81972429722838	5.56770303379565	0.135171919375936	0.686930406326919	0.871988646798705
Merged-chr5-103821719-2	chr5	103821619	103821819	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133919, intron 7 of 19)	intron (NM_133919, intron 7 of 19)	67146.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	2.64204077262909	2.61426054191479	2.42835934040881	2.40022279495301	2.59249002899815	2.87744530576729	2.81485631444746	2.7665580278433	1.23814335554573	0.0625062052392588	0.264766078476863
Merged-chr12-14152128-4	chr12	14152020	14152220	+	873.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029007)	promoter-TSS (NM_029007)	-82.0	NM_029007	105005.0	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding	4.25064344960196	4.03683773186314	4.20536892418731	4.12861376653392	4.29075225321118	4.28382434921455	4.54666362970773	4.37710535671963	0.546016311128094	0.156618313468686	0.442624272785975
Merged-chr3-108416036-4	chr3	108415937	108416137	+	854.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017392)	promoter-TSS (NM_017392)	-543.0	NM_001004177	53883.0	Mm.39728	NM_017392	ENSMUSG00000068740	Celsr2	Adgrc2|EGFL2|Flamingo1|flamingo|mKIAA0279|mfmi1	cadherin, EGF LAG seven-pass G-type receptor 2	protein-coding	4.34168920524711	4.22920499070146	4.30086748407229	3.95953604936336	4.27817909702503	3.91230219699008	4.19488653849699	4.41858995148935	0.0385853660266891	0.926936688065907	0.97320240249562
Merged-chr8-111062645-4	chr8	111062543	111062743	+	959.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6304.0	NM_028274	72544.0	Mm.24174	NM_028274	ENSMUSG00000109941	Exosc6	2610510N21Rik|C76919|Mtr3	exosome component 6	protein-coding	4.6051150477688	5.21208754658448	5.25090882293201	5.08222972715906	5.04898697526015	5.61482642069396	5.28259152038445	5.08854536851738	0.384832389984665	0.259911920889318	0.571684145019647
Merged-chr6-120085235-4	chr6	120085141	120085341	+	934.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-8139.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	5.11469838805299	4.82445818867239	4.64009473601691	5.23063785632144	5.32214959828278	4.77485607214972	4.74431209415238	4.87832556480151	-0.038024293660614	0.917740740097548	0.969719335386341
Merged-chr3-7613052-5	chr3	7612922	7613122	+	947.2800289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313890)	promoter-TSS (NM_001313890)	-129.0	NM_001313890	16196.0	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	3.35394691894622	3.28853338573782	3.51923359344163	3.08230276754289	3.48779494098227	3.58291306754492	3.39830830688599	3.46461381630728	0.624119669951042	0.232160120311011	0.541765300754621
Merged-chr13-99238904-4	chr13	99238804	99239004	+	824.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 3 of 4)	intron (NM_001004149, intron 3 of 4)	54081.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	4.28061716302806	4.1043284118424	4.62235620156925	4.28676206292216	4.36111798403104	3.87325491640913	4.2182507411457	4.18851860882745	-0.370477949242696	0.382951921236105	0.684806264846199
Merged-chr17-23564256-4	chr17	23564138	23564338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033496)	promoter-TSS (NM_001033496)	-12.0	NM_001033496	449521.0	Mm.268582	NM_001033496	ENSMUSG00000071256	Zfp213	BC038178|D17Ertd197e	zinc finger protein 213	protein-coding	8.14877743723447	8.14056181433757	8.07835715159765	8.29273122456648	8.42073834629889	8.56935965609839	8.60628091422331	8.471834643997	0.43449941027898	0.00487886305901964	0.0467015322321085
Merged-chr11-100320493-4	chr11	100320387	100320587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011508, intron 1 of 3)	CpG	538.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	8.20020529873293	8.5272219259235	8.30142827693334	8.17126423139703	8.33836065144812	8.59254037892789	8.42103991867555	8.45975449371695	0.187117025020889	0.257167637680853	0.568882595720092
Merged-chr7-29983788-4	chr7	29983703	29983903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167873)	promoter-TSS (NM_001167873)	-152.0	NM_001167873	243905.0	Mm.322432	NM_001033355	ENSMUSG00000074221	Zfp568	C80731|Gm1691|Znf568|chato	zinc finger protein 568	protein-coding	8.05761742286391	7.87205996218028	8.12185966496134	8.45588667955174	7.79023267505806	7.83717238720214	8.01402429772606	7.79663255622253	-0.37721176358913	0.0468445195700507	0.22251943510687
Merged-chr10-25449558-4	chr10	25449481	25449681	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 3 of 16)	intron (NM_001358754, intron 3 of 16)	41213.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	5.51870790536121	5.52238512789528	5.4394420304959	5.58898267714638	5.15702097750251	5.19684059578125	5.20406869636734	5.28955884942143	-0.56593812698392	0.0424523705041547	0.209187766016976
Merged-chr12-4572054-4	chr12	4571937	4572137	+	911.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20971.0	NM_001198969	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	4.56920988730686	4.26340112442429	4.49128071083402	4.78118451056647	4.47472946179281	3.9402222303096	4.58565222466892	4.48838911636501	-0.342299913295529	0.410168841428458	0.70557193956543
Merged-chr7-105767940-4	chr7	105767870	105768070	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162943, intron 2 of 20)	intron (NM_001162943, intron 2 of 20)	-15735.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	4.86029461012864	4.80522049329984	5.09470420536707	5.157119701838	4.77903393961335	4.75389083700975	4.90864936824307	4.85786809260994	-0.351567374616899	0.285163733827704	0.596953252281083
Merged-chr19-61265084-1	chr19	61264984	61265184	+	850.0	f1_balb.idr	Intergenic	B1_Mur3|SINE|Alu	-36666.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	2.93779930325405	2.73087815544928	2.82266390091328	2.92051254974455	2.77536272350809	2.73026971871674	2.75162704253573	2.62617069931869	-0.638226315144389	0.316367169985969	0.62832538407929
Merged-chr6-24707858-3	chr6	24707765	24707965	+	932.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25380.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	4.22974344957542	4.39576566362528	5.06282701076944	5.31231043093268	3.84257612069827	3.83169979997789	4.1111107658347	3.70141296665265	-2.36772442560451	2.92003752912313e-06	9.21300315981628e-05
Merged-chr10-121510130-4	chr10	121510108	121510308	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33958.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	5.07935584244914	4.818580146668	5.28308686124143	5.44759492506871	4.5327973633257	4.67523725327142	4.73766067012729	4.87254483180618	-0.977242142074493	0.00535640795305757	0.050014923480347
Merged-chr3-55112124-4	chr3	55112070	55112270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144895)	promoter-TSS (NM_144895)	4.0	NM_001144987	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	7.10559507221019	7.27092695016342	7.72856459452885	7.37870325503036	7.28979045687713	7.60928977928187	7.52213014363274	7.12635607443501	0.00950906800030563	0.964755625066888	0.987505292820766
Merged-chr9-115310572-4	chr9	115310502	115310702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024222)	promoter-TSS (NM_024222)	-181.0	NM_024222	68292.0	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	8.66803175677864	8.91420039028505	8.52044390775921	8.67896682598492	8.97589770976026	9.03230564089437	9.26960281259651	8.96059481690611	0.4484048837631	0.00575782439610681	0.0527256120790539
Merged-chr10-80160994-4	chr10	80160893	80161093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-6846.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	6.24431866857986	6.21140600335942	6.47257055755174	6.39815148935732	6.0809170113975	6.40161142564316	6.25111423391901	6.14139237536264	-0.185956457826161	0.415708699677279	0.709886482687489
Merged-chr9-26997252-4	chr9	26997168	26997368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025862, intron 1 of 10)	ORR1A4|LTR|ERVL-MaLR	2281.0	NM_025862	66948.0	Mm.289244	NM_025862	ENSMUSG00000031969	Acad8	2310016C19Rik|AI786953	acyl-Coenzyme A dehydrogenase family, member 8	protein-coding	6.20853691867268	6.87877298102282	6.58216612969752	6.87854617139517	6.6034588264359	6.58717662751315	6.96760504147554	6.47679285067308	-0.00894738849927958	0.971322045500197	0.989667458652484
Merged-chr13-59818527-4	chr13	59818441	59818641	+	654.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 2 of 27)	intron (NM_153538, intron 2 of 27)	4606.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	3.730339034568	3.6449116063079	3.97985317387695	3.82722748690275	3.93089425663651	4.00698231358909	3.82048266394223	3.83409736327403	0.282767498983116	0.523624850605927	0.782595133675155
Merged-chr2-73313288-4	chr2	73313190	73313390	+	842.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025854)	promoter-TSS (NM_025854)	638.0	NM_001355711	74616.0	Mm.247457	NM_029022	ENSMUSG00000008226	Scrn3	4833415E20Rik|AI427019|AV002033|Ses3	secernin 3	protein-coding	4.26447932259288	4.31274195679144	4.07064292878667	4.20250313360844	4.23604499562083	4.56380869456575	4.10478794533475	4.54435523868199	0.373847106064266	0.348473007599383	0.656238106962862
Merged-chr3-38130297-1	chr3	38130197	38130397	+	700.5	f0_balb.idr	Intergenic	Intergenic	77822.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	3.43785072023508	3.66562102047552	3.769869129774	3.91758163413617	3.52957593325914	3.55290355470968	3.89049397192002	3.6664219168613	-0.170728283100754	0.731628282539434	0.893711507171347
Merged-chr15-102225567-4	chr15	102225441	102225641	+	889.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013566, intron 2 of 14)	intron (NM_013566, intron 2 of 14)	6394.0	NM_013566	16421.0	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	4.28336227651893	4.10458274500377	4.10328642436534	3.99378629257442	4.40179607809198	4.22817514971992	3.98621222921186	4.3226835588782	0.341322778244208	0.402189654441467	0.699749637346659
Merged-chr8-35679217-4	chr8	35679106	35679306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081279, exon 3 of 3)	3' UTR (NM_001081279, exon 3 of 3)	-90186.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	6.23821110120508	6.01403144435302	6.63275594770905	6.37800914901649	6.43586378804341	6.04013857334005	6.49678102204791	5.83033056572163	-0.144727068488251	0.595579091246155	0.824021972428006
Merged-chr11-75170457-4	chr11	75170412	75170612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010430)	promoter-TSS (NM_010430)	-257.0	NM_010430	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	6.02446355845045	6.12526967768668	6.62379235840736	6.13753915009459	6.5858055451585	6.76908914847081	6.7817301728859	6.49400910345146	0.61714451682952	0.00957612963290172	0.0765090729756776
Merged-chr10-10411231-4	chr10	10411105	10411305	+	896.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 12 of 36)	intron (NM_001127353, intron 12 of 36)	61109.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	4.13955108184086	3.82564509857044	4.46984241247879	3.91155620410293	4.98977501690176	4.79831295989063	4.60385046587576	4.54750294449633	1.51789468828188	0.000185110793217568	0.00341082090355508
Merged-chr11-104001705-4	chr11	104001606	104001806	+	920.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34835.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	4.65122935178096	4.2706342121365	4.57789106778666	4.30421791100212	4.48177662056329	4.40633591947427	4.39535827968924	4.61242705204025	0.0692762999167602	0.853854488746228	0.944905950148447
Merged-chr3-97661418-4	chr3	97661329	97661529	+	912.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182997, intron 2 of 7)	MER58A|DNA|hAT-Charlie	3217.0	NM_182997	108097.0	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	4.54800981526934	4.45119849236027	4.24871976556776	4.45910490944427	4.67447236309782	4.2750271142297	4.67001147791982	3.98049562411624	0.0218861095423403	0.957868905669001	0.984949161200396
Merged-chr3-153913005-4	chr3	153912892	153913092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163478)	promoter-TSS (NM_001163478)	-26.0	NR_028094	19352.0	Mm.277831	NM_011231	ENSMUSG00000038975	Rabggtb	-	Rab geranylgeranyl transferase, b subunit	protein-coding	8.05032638844779	8.1445912786815	8.27413827617367	8.11483855156207	8.24424547743514	8.53409158403615	8.31192265521783	8.34018390947578	0.26927505112199	0.090406169143249	0.328384400563754
Merged-chr8-40910961-4	chr8	40910868	40911068	+	962.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007514, intron 7 of 11)	intron (NM_007514, intron 7 of 11)	-15265.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	4.56650944647908	4.23659794208893	4.66073360803942	4.78140975735791	5.30581336030428	5.41014907526801	5.60227329262994	5.39610068083858	1.59970097991346	3.83136157433797e-06	0.000117144538444932
Merged-chr12-76265151-4	chr12	76265046	76265246	+	826.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138745, intron 1 of 27)	RLTR11B|LTR|ERVK	9914.0	NM_138745	108156.0	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	4.12969911490554	3.78516766130825	4.29691950094091	3.47709985952301	4.09666411161086	4.16388240218628	4.23703119516248	3.82926589603345	0.373589299218036	0.445410687521142	0.731479858046592
Merged-chr12-40544779-4	chr12	40544682	40544882	+	821.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	98729.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.46933237055693	4.55277398795968	4.08226260617582	4.41718960055253	4.49266273274192	4.51285369611043	4.67687023550543	4.66096799264369	0.426318377266796	0.253130078285746	0.564424091294439
Merged-chr7-128312504-4	chr7	128312396	128312596	+	985.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14365.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	4.70203048920243	4.65984955442757	4.44856511743672	4.21348632124222	4.88145363110763	5.17828793416083	4.47421214107086	4.87862259758116	0.781348501306609	0.0393345396128749	0.199685699672265
Merged-chr14-51052857-2	chr14	51052757	51052957	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2694.0	NM_001011877	497113.0	Mm.379741	NM_001011877	ENSMUSG00000059648	Rnase11	Raj1	ribonuclease, RNase A family, 11 (non-active)	protein-coding	3.19294880133547	3.28396495744723	3.30880851398222	3.63299143901444	3.27882276160844	3.17565260880327	2.8449769858987	3.36096260181129	-0.712440398988734	0.243696466272495	0.554713292984908
Merged-chr5-110176875-4	chr5	110176793	110176993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008146)	promoter-TSS (NM_008146)	36.0	NM_008146	269682.0	Mm.9392	NM_008146	ENSMUSG00000029502	Golga3	5330413L04|5430416E01Rik|AI449376|AW490576|G1-499-14|Mea-2|Mea2|Mea2/Golga3|repro27	golgi autoantigen, golgin subfamily a, 3	protein-coding	5.59360229964677	5.50508889175037	5.82518231750077	5.4089139860907	5.88451035408917	6.1320310132229	6.00893964350458	5.9113352231077	0.667131007771855	0.00994036561752342	0.0785724913147917
Merged-chr6-122853798-4	chr6	122853752	122853952	+	798.4381099999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009779, intron 1 of 1)	intron (NM_009779, intron 1 of 1)	2305.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	3.65254051401326	3.55176940709232	3.55039807377264	3.53491243612173	3.17781911871499	3.72057358271451	3.53602740930056	3.37756693806787	-0.371532020272129	0.47437568964036	0.75165589989079
Merged-chr4-71291985-4	chr4	71291890	71292090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-757062.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	7.97931446569894	8.13161975043721	8.62401499257571	7.83549502139053	8.29904995275948	8.40568061561151	8.50471871956742	8.44355838517768	0.307399864693657	0.133018838701229	0.406114262671132
Merged-chr4-15257003-4	chr4	15256899	15257099	+	903.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8821.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	6.03602172897058	5.86170357793796	6.05566782301629	6.45817337624349	4.67910061360868	4.76222856841919	4.88913743522731	5.44951975123688	-2.02655068990281	1.68690868760504e-09	1.03779147342298e-07
Merged-chr7-27198591-4	chr7	27198471	27198671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290513, intron 2 of 7)	PB1D7|SINE|Alu	-2300.0	NM_001285825	53607.0	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	7.07947685379394	7.36809362796046	7.39699912385944	7.33908475925177	7.22309167772064	7.43113617153351	7.3698415280728	7.05069492993918	-0.0417898510968713	0.827534657063356	0.933903677361406
Merged-chr18-61726331-4	chr18	61726217	61726417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021296)	promoter-TSS (NM_021296)	14.0	NM_021296	17714.0	Mm.269657	NM_021296	ENSMUSG00000024580	Grpel2	mt-GrpE#2|mt-Grpel2	GrpE-like 2, mitochondrial	protein-coding	7.34581285887718	7.24546812861334	6.97655851420579	7.18489065008716	7.3913073295422	7.40859961370635	7.43407483212738	7.24836445431692	0.239958464488172	0.192498096437971	0.492157893412656
Merged-chr17-35220765-4	chr17	35220649	35220849	+	967.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010909, exon 4 of 4)	exon (NM_010909, exon 4 of 4)	-14261.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	4.04497137538702	4.64009022411823	4.33928037489128	4.04098011612102	4.71480167585305	4.55458076739531	3.97403039027635	4.37958680827527	0.359331341598143	0.41839852950679	0.711912368071791
Merged-chr4-35157475-4	chr4	35157368	35157568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178061)	promoter-TSS (NM_178061)	16.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	6.21617124703224	6.11622894299894	5.85686534670185	6.15915452392647	6.11075016388742	5.90604793693111	6.09024753118796	5.90080672416116	-0.13696483973183	0.570108215833479	0.80984538785845
Merged-chr18-43523495-4	chr18	43523392	43523592	+	814.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85206.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	4.08751543061903	4.08185369830664	3.77281822649131	4.21175978965716	4.22609882803748	4.25846995564741	4.11578135706621	3.88440577144465	0.184244917691077	0.67022758978517	0.8639597524959
Merged-chr17-87378523-3	chr17	87378431	87378631	+	847.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 19 of 19)	intron (NM_028639, intron 19 of 19)	49210.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	3.77734037771374	3.43606739647951	3.96315042050337	3.85947190141455	3.35920296496338	3.41980752106955	3.4886167321321	4.19496968314777	-0.323962919206514	0.563594851998339	0.806428731514002
Merged-chr10-24103503-4	chr10	24103392	24103592	+	689.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1541.0	NM_001010840	494546.0	Mm.379739	NM_001010840	ENSMUSG00000100004	Taar8c	taR-8c	trace amine-associated receptor 8C	protein-coding	3.69789383515679	3.84142042312634	4.09221276124699	3.68878053935547	3.99986993806018	3.75809481371995	3.89372998188429	4.08959001567922	0.320710141059366	0.477087342619298	0.753320087442721
Merged-chr15-102722196-4	chr15	102722074	102722274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026192)	promoter-TSS (NM_026192)	4.0	NM_026192	67488.0	Mm.71682	NM_026192	ENSMUSG00000023055	Calcoco1	1810009B06Rik|Cocoa|Gcap11|mKIAA1536	calcium binding and coiled coil domain 1	protein-coding	7.82422458030599	7.92968419552219	7.6796919667062	7.99999569455785	7.91423710794327	8.01817869856056	7.99774207265888	7.79709286017476	0.0793717881099601	0.639520337243841	0.847607151813091
Merged-chr12-76962360-4	chr12	76962246	76962446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146176)	promoter-TSS (NM_001146176)	-98.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	9.02642748258807	8.81385463816507	9.05162525822596	8.91184278934389	8.9141052298207	8.92559891384901	9.22722949497124	8.8010992842399	0.0302367086090788	0.850499337032816	0.943627844188644
Merged-chr14-33303617-4	chr14	33303506	33303706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 4 of 10)	intron (NM_153800, intron 4 of 10)	86783.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	4.95593679841258	5.09198098265561	5.05669979832406	4.77991217033265	5.00890548828615	4.77904935911222	4.86226522992679	5.05323803035449	-0.0564731347545359	0.86190381659675	0.947901186692584
Merged-chr10-128902619-3	chr10	128902531	128902731	+	929.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6288.0	NM_001042580	12512.0	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	3.34394891488133	3.37313674946177	3.55706768488346	3.88962214213544	3.20426748517969	3.20003298377948	3.2736424097007	3.22176372151492	-1.26163834638121	0.0251975374838079	0.149225020430981
Merged-chr10-80985759-4	chr10	80985648	80985848	+	926.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	CpG	15617.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	4.77217869650182	5.49493509707892	4.49968148164127	4.31672998034118	5.73589930502943	5.45166228251318	4.75012043205213	4.68478152640444	0.683772647689591	0.309043508836297	0.621448368942531
Merged-chr2-112492596-2	chr2	112492497	112492697	+	800.5	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_028844)	promoter-TSS (NM_028844)	-367.0	NM_028844	74268.0	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	3.57562036172333	3.97396174636354	3.69320657214418	3.80249751836836	3.38824281661815	4.07115231320954	3.62201320699185	4.23152615377115	0.277530482069798	0.598279368087018	0.825833439496293
Merged-chr10-81136987-4	chr10	81136916	81137116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	CpG	745.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	5.65036038867137	5.64144492822609	5.62357183638716	5.43217669725296	6.01848242180522	6.33738307669118	6.03793040156097	6.10367960227508	0.884518241174875	0.000393676413025172	0.00636273692159825
Merged-chr11-115277128-4	chr11	115277054	115277254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007997)	promoter-TSS (NM_007997)	-185.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	8.34092587684009	8.52035670160279	8.06460543376348	7.86225641258749	8.50420195096059	8.64867052416132	8.2759517661535	8.26442885140766	0.275074230093062	0.170878794392412	0.464014859975631
Merged-chr11-58939576-3	chr11	58939475	58939675	+	844.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022423)	promoter-TSS (NM_022423)	-669.0	NM_022423	108660.0	Mm.249986	NM_022423	ENSMUSG00000020496	Rnf187	2410016F01Rik|AB030190|RACO-1	ring finger protein 187	protein-coding	3.44568560297469	3.57214724122846	3.39095199509364	2.9156854955793	3.4131832169272	3.44843039051086	3.32068023082757	3.44419885637974	0.211035937051778	0.710565881214932	0.884197177759025
Merged-chr4-46088055-3	chr4	46087967	46088167	+	985.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021883, intron 4 of 9)	intron (NM_021883, intron 4 of 9)	48845.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	4.56038360535609	4.41687902616401	4.87647011137332	4.58175972673658	3.55134098859258	4.05096870714475	4.01917598720886	3.86237796287378	-1.95276436446298	1.6537239853312e-05	0.000432123419794014
Merged-chr11-50212126-4	chr11	50212028	50212228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1308.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	6.97685457969869	6.53520797578544	5.99499160188408	6.70517988070364	6.20441946012677	6.84609618728794	6.3074834839287	6.39089044311598	-0.215393682739523	0.446154567624368	0.731926707129503
Merged-chr1-9748497-4	chr1	9748394	9748594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173443)	promoter-TSS (NM_173443)	-112.0	NM_173443	70675.0	Mm.274493	NM_173443	ENSMUSG00000045210	Vcpip1	4932442A08|5730421J18Rik|5730538E15Rik|VCIP135|mKIAA1850	valosin containing protein (p97)/p47 complex interacting protein 1	protein-coding	9.1304977900042	9.02309053074384	9.11893010474051	9.18230142287903	9.07002216777842	9.0085187393581	9.33626311206186	8.92764126240348	-0.0255984157290147	0.867980063616503	0.950535454684971
Merged-chr7-135520433-3	chr7	135520314	135520514	+	738.188904	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178669, intron 1 of 2)	intron (NM_178669, intron 1 of 2)	8240.0	NM_178669	212070.0	Mm.39721	NM_178669	ENSMUSG00000050866	Clrn3	AI649392|Tmem12	clarin 3	protein-coding	4.18036150100502	3.92422773088621	4.18104773488025	3.71239326024033	3.55643672227106	3.69845406559232	3.94582969902997	3.91241040897092	-0.626793334151152	0.191091793083884	0.490417410029363
Merged-chr11-46436952-4	chr11	46436849	46437049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025426)	promoter-TSS (NM_025426)	2.0	NM_001104530	66213.0	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding	7.25862874279228	7.24360407461691	7.49537110312462	7.30231442437823	7.3359488979829	7.16100272005044	7.44037740601903	7.18833142957225	-0.0490889922247786	0.790176532208522	0.918828686312538
Merged-chr2-181238325-2	chr2	181238225	181238425	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_183162, exon 5 of 19)	exon (NM_183162, exon 5 of 19)	3702.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	2.63609170774535	2.80392736250056	2.47497515166705	2.17049770169005	2.96726517411299	3.261150620749	3.07479327898344	3.14065458341489	2.84745318580779	0.000590492606350921	0.0088318287933289
Merged-chr3-129984953-3	chr3	129984833	129985033	+	923.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207209, intron 22 of 23)	intron (NM_207209, intron 22 of 23)	-14727.0	NM_001293644	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	2.88273155419466	2.83121945105779	3.04891358587782	3.23638931107335	2.40738869669804	2.57465878228069	2.68443790382657	2.62164191446686	-2.44721577793164	0.00141878980438512	0.017858198014045
Merged-chr16-38761594-4	chr16	38761513	38761713	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152434, intron 4 of 6)	ORR1F|LTR|ERVL-MaLR	19354.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	5.34852192097436	5.10461974438178	5.54958597087244	5.47410449469357	5.54760802857887	5.49456051383827	5.59799105299659	5.78537996489308	0.388751859502397	0.16855925445065	0.460783438533791
Merged-chr4-62408730-4	chr4	62408620	62408820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027297)	promoter-TSS (NM_027297)	-63.0	NM_027297	70052.0	Mm.30660	NM_027297	ENSMUSG00000066148	Prpf4	1600015H11Rik|AI874830|AW047464|bN189G18.1	pre-mRNA processing factor 4	protein-coding	8.50217566562614	8.71574477061935	8.44286446317601	8.53159812119953	8.63687214731458	8.59971539678415	8.63861234921012	8.38450565702092	0.0218602482633108	0.888798204822227	0.958331420576655
Merged-chr17-46857286-4	chr17	46857193	46857393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-25880.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	4.91093199325662	5.06322995990337	5.25041742515924	4.92186417093284	5.20544624132597	5.36242592042321	5.19447503857573	5.27612140592977	0.42229510366191	0.159638587020479	0.447306026277631
Merged-chr13-92611012-4	chr13	92610915	92611115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172588)	promoter-TSS (NM_172588)	-123.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	8.6393027716079	8.3426391200214	8.28895281367741	8.64573618882804	8.35683682168726	8.14911708541783	8.52100006323871	8.23689996437558	-0.212856985429009	0.224928086331181	0.53334646858495
Merged-chr13-35955522-1	chr13	35955422	35955622	+	603.5	f1_balb.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-12384.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	2.95495651692295	2.8013441995834	2.89581578316001	3.44384120430666	2.73669425425727	2.73017677453189	2.69160957037146	2.76669299953458	-1.53602798460262	0.026465639173881	0.154346393343521
Merged-chr6-39076727-4	chr6	39076628	39076828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 10 of 12)	intron (NM_011539, intron 10 of 12)	-9142.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	6.74883922039386	6.64899073002014	6.8747724122194	6.87621708104423	6.59271534372572	6.86703052945344	6.73011969122074	6.9952548710654	0.00338297823435779	0.987065774809066	0.995258250959001
Merged-chr6-38967407-4	chr6	38967322	38967522	+	937.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	ORR1D2|LTR|ERVL-MaLR	48436.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	4.62815668096293	4.09329155981337	4.95045744288	5.06467628371901	4.65679347928768	4.43879842070494	4.82844549805142	4.84879113732555	-0.089912672041577	0.830534299174243	0.93499882818844
Merged-chr10-128790937-4	chr10	128790849	128791049	+	910.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164197)	promoter-TSS (NM_001164197)	-6.0	NM_021412	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	4.58124312106658	3.81620113995627	4.54630218673322	4.28462745965891	4.30154872864066	4.29604114606283	4.33075594216683	4.11709903988879	-0.167117644786398	0.699497329455399	0.878819528961359
Merged-chr16-89718686-4	chr16	89718584	89718784	+	932.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99668.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	5.06478692748392	4.7486740849756	4.76422616378307	5.03898533008272	4.79992063299465	4.64671536009296	4.62415458350308	4.64240047797911	-0.484041705501479	0.155907750437131	0.441791383747941
Merged-chr5-123721043-4	chr5	123720933	123721133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027494)	promoter-TSS (NM_027494)	11.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	7.65394868640795	7.53540943143036	7.14444938644676	7.19132341186808	7.49341399107616	7.59310557804398	7.50857557004296	7.29860921127666	0.112920290289387	0.574853360523079	0.812628374305066
Merged-chr2-3714197-3	chr2	3714011	3714211	+	786.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	653.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	3.5491848696044	3.57074070449241	3.71063243288551	3.65792475841736	3.81404569161921	3.7760322247626	3.53659265175337	3.70850225404484	0.280784100453135	0.547679195175502	0.796971609095299
Merged-chr4-141503295-3	chr4	141503179	141503379	+	782.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	35318.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	3.42262009882751	3.49379979515001	3.23549588919511	3.56747672672314	3.20138974094872	3.70493088526313	3.57222891031757	3.73033817343641	0.391773740335399	0.464861137876351	0.745619373389387
Merged-chr13-73937835-4	chr13	73937741	73937941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027182)	promoter-TSS (NM_027182)	30.0	NM_001308041	105246.0	Mm.278509	NM_001024508	ENSMUSG00000057649	Brd9	AL022779	bromodomain containing 9	protein-coding	7.36083834945594	7.36878962996582	7.74181337449076	7.29432213169576	7.25315752524517	7.72131076164567	7.64177010561663	7.53901899565975	0.128887052351661	0.524786294471339	0.783101934504021
Merged-chr14-33205613-4	chr14	33205491	33205691	+	893.70343	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11232.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	4.07770622889809	3.64098560915988	4.0321754022183	3.96053776193159	4.04428132547159	4.20259979777309	4.06029395750304	3.93227722200448	0.33601066025293	0.438473175476708	0.726424033080175
Merged-chr1-80639184-4	chr1	80639064	80639264	+	879.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 2 of 55)	MTEa|LTR|ERVL-MaLR	26188.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	4.16697220869194	4.34193839485479	4.06692145575874	4.15941496362204	4.2775950952789	4.55907142420045	4.32834813254539	4.34537489765726	0.457586623015059	0.236846700352575	0.546928084752009
Merged-chr14-55605017-4	chr14	55604907	55605107	+	927.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159418, intron 1 of 8)	B1_Mur1|SINE|Alu	428.0	NM_001159418	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	4.03856089838246	4.13909698116869	4.23256455103324	4.1980915284795	4.45202401763933	4.16300270280877	4.25758907115388	4.39769224041542	0.421563140659543	0.280822947004321	0.592995625513841
Merged-chr1-183804018-4	chr1	183803900	183804100	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151520, intron 2 of 2)	intron (NR_151520, intron 2 of 2)	55023.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	4.65848823608962	4.89978096838635	5.16404480196961	4.99674285833361	5.0534191976499	5.07436345495953	5.10856580754654	4.85985557333602	0.160567846678285	0.619920380351937	0.836911326019849
Merged-chr2-170321640-4	chr2	170321538	170321738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34723.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	5.59170938114319	5.2338834817697	5.15019809286307	5.45616496231284	5.41453915452893	5.3280110042545	5.72625253973385	5.40137918651734	0.178295483254674	0.543756956007972	0.794859145497123
Merged-chr6-4601615-3	chr6	4601514	4601714	+	694.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145398, intron 1 of 17)	intron (NM_145398, intron 1 of 17)	548.0	NM_145398	213819.0	Mm.270703	NM_145398	ENSMUSG00000015189	Casd1	Cas1|Cast1|SOAT	CAS1 domain containing 1	protein-coding	3.57472180866416	3.4946319259023	4.14790271468871	3.74849370970023	3.63802073231941	3.37694233854335	3.61505152520979	3.39500738469685	-0.774948944735837	0.142489960625308	0.420109887637676
Merged-chr14-71104187-3	chr14	71104112	71104312	+	914.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147061.0	NR_046075	100043132.0	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	5.53256157997811	4.56613526069284	5.59438396317957	5.21164307412507	3.87334650782375	4.19453043410598	4.27450121445254	4.29090388405069	-2.48985723927724	1.84540400060064e-08	9.32249903184902e-07
Merged-chr3-157933704-1	chr3	157933604	157933804	+	1000.0	f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	-8641.0	NM_145953	107869.0	Mm.28301	NM_145953	ENSMUSG00000028179	Cth	0610010I13Rik|AI314617|BC019483|CSE|Cys3	cystathionase (cystathionine gamma-lyase)	protein-coding	2.76128862127391	2.99402991727628	2.76158442988049	2.64951135857411	2.76711194149536	2.93728147667505	2.94159454476895	3.16866939363355	0.734146579628322	0.239700612951302	0.550198320840397
Merged-chr5-20943743-6	chr5	20943622	20943822	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	intron (NM_001080977, intron 1 of 7)	-7267.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	4.29431645186632	4.35600257629973	4.4175356375361	3.46003551861763	4.29426412666928	4.23831886111628	4.18736243180892	4.29222477683969	0.179924726696112	0.710299311629801	0.884042572171666
Merged-chr5-150178382-4	chr5	150178294	150178494	+	724.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81536.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	3.4434078544034	3.33736763531796	3.74557876634348	3.63995126417974	4.29956258458028	4.20374688620054	3.9728609253017	3.68831948687677	1.45394039523642	0.00341052629653401	0.0353102329106901
Merged-chr4-118099791-2	chr4	118099651	118099851	+	853.25	f0_balb.idr|f1_balb.idr	intron (NM_001285520, intron 2 of 11)	ID_B1|SINE|B4	35195.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	3.13399249634004	3.57665476957405	3.35858807979627	3.08748810676893	3.13192713401803	3.04560327972478	3.0614789624604	3.07027522776817	-0.859350458890809	0.143518342800109	0.421883708687905
Merged-chr6-73059936-4	chr6	73059819	73060019	+	954.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164669, intron 61 of 76)	MTEa|LTR|ERVL-MaLR	-101171.0	NM_001190327	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	4.76608440342121	4.41385718392139	4.33073510168518	4.6652482942994	4.85511664599964	4.78491204102752	5.03718827653212	4.96812575848033	0.727428470275474	0.0375821734701465	0.193726921634221
Merged-chr11-61533852-4	chr11	61533763	61533963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252188, intron 5 of 10)	intron (NM_001252188, intron 5 of 10)	28719.0	NM_001330781	27078.0	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding	6.0610186759851	6.04858871903678	6.74577811750695	6.57759679524549	5.94980985411642	5.95155221115775	6.05237144486434	5.92087488108147	-0.662766907879848	0.0133557323367126	0.096866483798132
Merged-chr2-144695297-3	chr2	144695164	144695364	+	949.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	95311.0	NM_025314	66044.0	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DTD|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	3.75648611794247	3.4031038992519	4.61126760707598	4.26452088714159	3.44925700710791	3.44397529025898	3.44957179387513	3.46028704285449	-1.93404523948159	0.000965680600045894	0.0130701995494707
Merged-chr3-104856276-1	chr3	104856176	104856376	+	651.0	f0_balb.idr	intron (NM_009797, intron 1 of 9)	ORR1B2|LTR|ERVL-MaLR	8229.0	NM_009797	12340.0	Mm.19142	NM_009797	ENSMUSG00000070372	Capza1	CAPZ|CAZ1|Cappa1|capZ alpha-1	capping protein (actin filament) muscle Z-line, alpha 1	protein-coding	3.30250149508892	3.30681104263586	3.48134829957814	3.63949508807194	3.3436791835065	3.53955443290384	3.46779478227228	3.86007810985617	0.366510393839021	0.490891224488715	0.762574126317815
Merged-chr9-57262505-6	chr9	57262394	57262594	+	993.380981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028820, exon 1 of 3)	5' UTR (NM_028820, exon 1 of 3)	105.0	NM_028820	74211.0	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	5.34162187805535	5.67518331172693	5.57436455639768	5.31628568154538	5.7839449497522	5.66766321066999	5.0743909399393	5.91528859366909	0.292163670667608	0.348601095009812	0.656307354205775
Merged-chr6-43849395-4	chr6	43849293	43849493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-183115.0	NM_001311111	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	6.87536524821585	7.271438626678	7.15279131227539	6.29728273242869	6.47227709550842	6.82851124232225	6.32506825268536	6.11969600901993	-0.689557466894161	0.0167993105190771	0.113624606339218
Merged-chr7-141134342-3	chr7	141134242	141134442	+	738.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013782, intron 1 of 11)	intron (NM_013782, intron 1 of 11)	3056.0	NM_013782	27388.0	Mm.293591	NM_013782	ENSMUSG00000025495	Ptdss2	AI481134|AI988017|PSS2	phosphatidylserine synthase 2	protein-coding	3.49768163455996	3.84458946479991	3.85872054412048	3.15258280948185	3.33737008631985	3.83772769907465	3.54198862159879	3.71402319884081	0.00593089284960178	0.991477853161502	0.996745793587504
Merged-chr19-21962841-2	chr19	21962747	21962947	+	686.875	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-176270.0	NM_001035239	226025.0	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	3.50535447139714	3.39696576296578	3.35886614850517	3.39293497791108	2.73538216265972	2.80663232990477	3.12075374490112	3.13044480416693	-1.95050104459082	0.00251610235749338	0.0279049002343442
Merged-chr5-3494598-4	chr5	3494568	3494768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-49165.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	6.17280773216051	6.33018110030709	6.03705651708168	5.6168736384382	5.80542977251172	5.65535035834395	5.98539513202488	5.83172758383777	-0.361151384708753	0.2002841178959	0.502308700458484
Merged-chr18-24653420-4	chr18	24653316	24653516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026779)	promoter-TSS (NM_026779)	-275.0	NM_026779	68591.0	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	5.31433098513792	5.68418012757369	5.28316514093303	5.50088826414407	5.75773115729778	5.55224841191964	5.35042379797495	5.40313276238778	0.12573144707304	0.664329134091541	0.860955946242955
Merged-chr2-128769203-3	chr2	128769105	128769305	+	863.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	RLTR11B|LTR|ERVK	-49098.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	3.77450234399289	3.19746306066338	3.42155738081648	3.43287890136597	3.54896987830191	3.59431740850001	3.40877217969093	3.53096273463366	0.180539796530576	0.727603449897145	0.891575922190683
Merged-chr3-27742338-4	chr3	27742238	27742438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31886.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	6.77461380891216	6.75447505270156	6.43599515367656	6.59143775172646	6.51295206690216	6.54008995293458	6.4549693913042	6.43140014729092	-0.229728189884431	0.277354157220028	0.589500778069347
Merged-chr17-25914106-4	chr17	25914017	25914217	+	899.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139154, intron 2 of 6)	intron (NM_139154, intron 2 of 6)	5597.0	NM_139154	224624.0	Mm.328872	NM_139154	ENSMUSG00000025730	Rab40c	RAR3	Rab40C, member RAS oncogene family	protein-coding	4.61905735263557	4.05226412981042	4.76538195435997	5.07924601249728	4.24007155125318	4.17677477472776	4.43516906938275	4.89236743140577	-0.486193710661087	0.290728533992242	0.603000359025403
Merged-chr6-140853725-4	chr6	140853652	140853852	+	813.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	226867.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	3.96465183104936	4.31482613797963	4.01761406257271	3.62695357696605	3.96740130126346	4.38076226041085	4.27417614060619	4.44717171236133	0.713894674881011	0.11562781060164	0.376292608394939
Merged-chr2-131263483-2	chr2	131263383	131263583	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_149748, intron 1 of 8)	intron (NR_149748, intron 1 of 8)	644.0	NR_149748	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	3.38613868990431	3.53478123554734	3.16281557544592	3.04351769925316	3.25144897145362	3.07468698604067	3.08995360264752	3.22083509508108	-0.474412077509755	0.411681065564061	0.707123186245418
Merged-chr11-49825140-2	chr11	49825040	49825240	+	854.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_013529, intron 13 of 18)	intron (NM_013529, intron 13 of 18)	-21611.0	NM_001163671	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	3.23364723044768	3.45380590127299	3.17712344501644	3.02676321843282	3.39804306853388	3.098495535952	2.98041583212989	2.91955608113021	-0.409006141359831	0.502098843855466	0.769457185302407
Merged-chr2-160209613-3	chr2	160209508	160209708	+	914.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117886.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	3.71028016691908	3.32774903694788	3.84935320560866	3.79379525073574	3.67148506290327	3.42679035020071	3.4277518923955	3.55326426299847	-0.503003970071559	0.329431469665746	0.640759737104471
Merged-chr19-42170574-4	chr19	42170503	42170703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177319)	promoter-TSS (NM_177319)	36.0	NM_001164531	319740.0	Mm.287359	NM_177319	ENSMUSG00000018820	Zfyve27	2210011N02Rik|9530077C24Rik|AI426636|AI593546|AI835681	zinc finger, FYVE domain containing 27	protein-coding	6.79050334368936	6.74913748187948	6.37925756857382	6.62693793917014	6.69535160800898	6.66377891157229	6.62971917811516	6.35582415610424	-0.0717525447835473	0.743155281334103	0.898799547518055
Merged-chr5-103927617-4	chr5	103927501	103927701	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16342.0	NM_001359986	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	4.58752984004873	4.76370852681095	4.63046459721948	4.76574488118477	5.03999948857598	4.72111860728736	4.64980363685355	4.95490982907219	0.338362642709376	0.321513046965604	0.633178683838219
Merged-chr19-44410773-2	chr19	44410673	44410873	+	884.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3064.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	3.03263953017976	3.03575653316845	3.03300699974745	3.02636833425084	3.33873274977653	3.01286270736704	2.96145942242127	2.9698106897709	0.241265440088061	0.679129730871321	0.868317902828816
Merged-chr1-148821739-4	chr1	148821631	148821831	+	870.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1100708.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	3.46902117651894	3.23915972391001	3.92163506915407	3.94016211222938	3.87087684783131	3.94459205488359	4.30542796699633	3.91921763149362	0.936545417475835	0.0847535389059123	0.316801149304791
Merged-chr5-144277447-3	chr5	144277338	144277538	+	739.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040432, intron 1 of 2)	intron (NR_040432, intron 1 of 2)	377.0	NR_040432	100504231.0	Mm.441035	NR_040432	ENSMUSG00000086894	Gm15708	-	predicted gene 15708	ncRNA	3.2361042834044	3.20485651647492	3.12559891192503	3.30866285332304	2.89523563127914	2.74565178673352	3.11394706992435	3.12396930271903	-1.02096959000499	0.0936378223167894	0.334750249505744
Merged-chr5-8353885-4	chr5	8353788	8353988	+	988.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	L1_Mus2|LINE|L1	14272.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	6.34727634326582	6.42578631036287	7.31102937001509	5.5287749890161	6.87661113548003	6.80531700466722	7.0024925032198	6.8382246154892	0.442013246021262	0.38081035878099	0.683141804719797
Merged-chr15-83130056-3	chr15	83129961	83130161	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 6 of 7)	intron (NM_001347082, intron 6 of 7)	-7260.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	4.60501598854534	5.29781128207485	4.93794654382038	4.96423944958881	5.13276131053664	5.21696976032946	5.05200854086946	5.19836023042946	0.32590351331534	0.320953548303587	0.632724550343461
Merged-chr5-135145775-4	chr5	135145701	135145901	+	762.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3910.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	4.18839234875375	4.32921577742328	4.18901074976134	4.24239829134325	4.29681982311029	4.41025755536516	4.17111978010993	4.69743567275312	0.394202949787466	0.315203090120585	0.627049769471579
Merged-chr6-86526661-4	chr6	86526567	86526767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011865)	promoter-TSS (NM_011865)	-478.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	6.52461432741365	6.91980852967448	6.70398420567198	6.62895793896829	6.77702841010558	7.06235495721231	6.77093580282546	6.90741537260846	0.25177236867599	0.228925871095791	0.53786811614878
Merged-chr11-116146265-4	chr11	116146160	116146360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172571, intron 26 of 30)	intron (NM_172571, intron 26 of 30)	-7392.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	6.20004272769994	6.02197223933168	5.66419884329343	6.24944570532165	5.84797788771725	5.69706046655453	5.88598845839957	6.06238653718384	-0.294675095618693	0.266352233859421	0.578085840707737
Merged-chr5-123039199-4	chr5	123039070	123039270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029112, intron 3 of 4)	intron (NM_029112, intron 3 of 4)	7846.0	NM_029112	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	5.43109012285183	5.34442859667683	5.16091111668912	5.02604379778423	5.7092442645796	5.15998196045413	5.20064896888512	5.28494824092708	0.245856575214525	0.438791732311567	0.726732530107543
Merged-chr17-81668187-4	chr17	81668084	81668284	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	70203.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	5.49301429810489	5.47248640716554	5.43776629710841	5.65054786470856	5.76676662416711	5.21816426676819	5.29182562070784	5.54386844544196	-0.061438958132575	0.834203256310602	0.936725810109611
Merged-chr11-48901543-2	chr11	48901443	48901643	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024230, intron 2 of 4)	intron (NM_001024230, intron 2 of 4)	609.0	NM_001024230	432555.0	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	3.17744903133981	3.07175750349981	3.50638474050881	2.95067777515962	3.23620334158584	3.01376308142333	3.33865169362926	3.64088080165625	0.510539136921079	0.391159699070769	0.691034940965009
Merged-chr15-79774530-4	chr15	79774450	79774650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017470)	promoter-TSS (NM_017470)	-83.0	NM_017470	54152.0	Mm.288159	NM_017470	ENSMUSG00000022420	Dnal4	D15Ertd424e|Dnalc4	dynein, axonemal, light chain 4	protein-coding	8.33600046063932	8.50685258518787	8.24074836468934	8.33923168022142	8.40723020255541	8.43591501144601	8.33072689109189	8.3042498884274	0.0137209851070154	0.928482503639107	0.974017522689856
Merged-chr8-126597771-4	chr8	126597683	126597883	+	774.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4347.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	4.15484289913781	4.04871400196326	4.11353902044098	3.51478120131452	3.99570730046178	3.94954752953782	3.86367882232484	3.65530738935272	-0.267023336413419	0.584744487142661	0.817727810965392
Merged-chr7-88327687-3	chr7	88327567	88327767	+	872.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49582.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	4.15157895859889	4.74098021672965	4.52956835781538	4.54968790287086	4.09661783003729	4.06553207157223	3.92597675811936	3.99495841965574	-1.22359284210803	0.00363391902819198	0.0371315995560834
Merged-chr11-109417672-4	chr11	109417543	109417743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8303.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	6.45488495163169	6.90262485127881	6.70600231861449	6.42309098656238	6.28599481251262	6.52485557633985	6.3703017993734	6.46856903787114	-0.322171453966822	0.162082194925131	0.451144248358323
Merged-chr13-30738652-4	chr13	30738548	30738748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10585.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	7.37288118573217	7.26339892899797	7.43282309377771	7.75327181757382	7.08449020207932	7.11366696298338	7.63759263450883	7.38888183046294	-0.208311385236127	0.339586073098762	0.648774648981312
Merged-chr6-72162374-4	chr6	72162287	72162487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39190.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	7.44312073924037	7.04860598808286	7.26829030725379	7.51382002616689	6.97065159198393	7.08189230575476	7.3230787279728	7.08237772980993	-0.300518461709887	0.140762642150005	0.41732231461186
Merged-chr19-12801256-4	chr19	12801157	12801357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134152, intron 1 of 8)	intron (NM_134152, intron 1 of 8)	2678.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	6.72920351432829	6.80857862705514	6.5048112064728	7.03373103558931	6.87760257022559	6.95010139622957	6.62046637029922	6.68057491258268	-0.0121728538234736	0.956291521872028	0.984641708333466
Merged-chr3-108911202-4	chr3	108911060	108911260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025845, intron 1 of 5)	CpG	569.0	NM_025845	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	6.59117161638483	6.53056618257487	6.87918510849161	6.36234870555822	6.83904368189221	6.70316930047357	6.79214421699956	6.73915889683696	0.264159006044908	0.223950701366632	0.53210045864795
Merged-chr15-25843721-3	chr15	25843624	25843824	+	899.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 1 of 8)	intron (NM_001034851, intron 1 of 8)	426.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	3.74100912471575	3.92785037001671	3.84280989833641	4.30226094378784	3.89116745398727	3.49470725562132	3.56027688393824	3.51006749966536	-1.02988217883288	0.0460484726038584	0.220279302468384
Merged-chr7-121073739-4	chr7	121073656	121073856	+	834.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030691, intron 1 of 5)	intron (NM_030691, intron 1 of 5)	774.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	3.69642586716366	3.79821933897021	4.08827923804906	3.96302899892874	3.82576976112552	3.81525301479654	3.93812793880084	3.90521978118158	-0.0797901310426565	0.857442041649688	0.946298254907789
Merged-chr13-47014826-4	chr13	47014700	47014900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175340)	promoter-TSS (NM_175340)	50.0	NM_175340	105193.0	Mm.25593	NM_175340	ENSMUSG00000044231	Nhlrc1	AI505271|B230309E09Rik|EPM2B	NHL repeat containing 1	protein-coding	6.19822089941703	6.48044108497812	6.23833861231885	6.19767577776936	6.22455683459451	6.13798132018006	6.18718691009258	6.37876528376914	-0.0690899357606337	0.761538837417158	0.906556667566817
Merged-chr6-37601273-4	chr6	37601184	37601384	+	946.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71111.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	4.81155057337172	4.52480778493018	5.11640059105505	5.75172621794639	5.27083486803385	5.32543448140295	5.51557738471689	5.27187199103445	0.340733812936343	0.39643558602969	0.69519327480908
Merged-chr6-50252878-4	chr6	50252765	50252965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018769, intron 1 of 9)	MLTR11B|LTR|ERVK	8904.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	6.59909863987667	6.44589167245061	7.37271648699938	7.2568947018172	6.21413444071773	6.27143901706038	6.80091184083869	6.68904206412496	-0.666354135083242	0.0213435176633342	0.133697988538103
Merged-chr8-70856984-4	chr8	70856841	70857041	+	941.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032397)	promoter-TSS (NM_032397)	67.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	4.62808792052097	4.68862183576852	4.43295472682066	3.92120963051634	4.35282596498641	4.38030777004043	4.36998670555226	4.58895508482828	-0.0324876128302493	0.938965272346707	0.977881364615113
Merged-chr4-135947133-4	chr4	135947058	135947258	+	989.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357529)	promoter-TSS (NM_001357529)	-248.0	NM_001357529	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	4.41453952440993	4.48855461892185	4.45923925295925	4.77849521861099	4.65446930618556	4.54534213741041	4.0987197283132	4.86008059977144	0.0315673567094414	0.937432142491464	0.977334367260951
Merged-chr11-32537336-4	chr11	32537251	32537451	+	831.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	4085.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	3.94936654148829	4.44257334100571	4.50025888170396	4.01986640031869	4.03249940599564	3.96205964370403	3.82502921705397	4.04919518724286	-0.710447824333889	0.112948698000163	0.371444336514893
Merged-chr2-6718349-4	chr2	6718250	6718450	+	857.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	3312.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	4.49065261215201	4.22597861868821	4.56977644205513	4.68476154608214	4.41281366665928	4.29794359971091	4.51015257131544	4.40502291243422	-0.241049480951144	0.526241299507681	0.783568247232079
Merged-chr2-59427420-4	chr2	59427318	59427518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40736.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	6.18797505903098	6.75452786287856	6.00440996791415	6.1876341874399	5.94013392553119	6.01763462300778	5.8587853401425	5.58680632645906	-0.708060512518163	0.0111339449464561	0.0851512912156224
Merged-chr8-11340496-4	chr8	11340399	11340599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-27673.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	6.21943284755135	6.32744825507192	6.41688450547655	6.8596044331644	5.81191843399366	6.18859152653141	5.88613231835293	5.93636974452369	-0.828652277397699	0.00164657436290464	0.0201085124194891
Merged-chr13-91640423-4	chr13	91640327	91640527	+	939.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 4 of 15)	intron (NM_001360776, intron 4 of 15)	-101094.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	5.88328449248668	5.6564790333389	5.96351965850944	6.31125605298515	4.85152077569969	4.67266699391004	4.94255657410383	5.29264960700879	-1.82647021373109	2.4719517134589e-08	1.21095011020159e-06
Merged-chr9-106204685-4	chr9	106204596	106204796	+	933.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011876, intron 1 of 8)	intron (NM_011876, intron 1 of 8)	1588.0	NM_011876	23999.0	Mm.274346	NM_011876	ENSMUSG00000023277	Twf2	A6-related|AU014993|Ptk9l|Ptk9r	twinfilin actin binding protein 2	protein-coding	4.07147549018968	4.55883319184102	4.17321917439537	4.01568950426695	4.34795193457173	4.08722764979618	4.45444370708481	4.61747691758379	0.416546488978827	0.320706548252779	0.63245145906536
Merged-chr13-6922456-1	chr13	6922356	6922556	+	679.0	f0_balb.idr	Intergenic	Intergenic	-273685.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	3.4416151273784	3.21479218046434	3.2850357927421	3.40152035005834	3.02514190894287	3.34028618294478	3.21598850602036	2.89813324904678	-0.824380784511987	0.153140017262943	0.437555330104179
Merged-chr8-94857460-4	chr8	94857366	94857566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009090)	promoter-TSS (NM_009090)	16.0	NM_009090	20021.0	Mm.292492	NM_009090	ENSMUSG00000031783	Polr2c	33kDa|RPB3|Rpo2-3|mRBP31	polymerase (RNA) II (DNA directed) polypeptide C	protein-coding	6.39314911408177	6.02460035632185	6.07570204814229	5.55790008105257	6.59700234098332	6.48357329688773	5.9567555837716	6.04985769131356	0.420842942487211	0.154834685412345	0.440269481011378
Merged-chr18-36482214-4	chr18	36482113	36482313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27718.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	6.6327903494546	7.19105535742704	7.11593612539133	6.73346352115696	6.15360100711602	5.44823448667725	5.70445034816604	4.93083225534476	-1.99167273684179	0.000255487722391068	0.00444613993327464
Merged-chr8-94187514-4	chr8	94187412	94187612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8423.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	6.07981225897507	5.79270286939433	6.03968982155334	6.01447354921641	6.18905766226932	5.54900087539412	6.20133865087479	6.05612374684489	0.0767027176296799	0.771620004274475	0.910432508664506
Merged-chr4-99177146-4	chr4	99177037	99177237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16797.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	5.47988949960669	6.03808949735992	5.78110405497959	6.42464737921239	5.71068097083301	5.53272567090368	5.86701929977203	5.50737343984671	-0.543001203110078	0.0812346598940255	0.309324445332309
Merged-chr5-30959404-3	chr5	30959303	30959503	+	884.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016703, exon 2 of 9)	exon (NM_016703, exon 2 of 9)	924.0	NM_001294302	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	3.48530608795503	3.80832168506629	3.48573348864462	4.02618052735383	3.45352738733866	3.47355033989913	3.78757408392415	3.75400802804093	-0.347741629899992	0.506457960033907	0.772228506431889
Merged-chr10-68443012-3	chr10	68442948	68443148	+	814.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028491, intron 5 of 7)	intron (NM_028491, intron 5 of 7)	98827.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	2.82946971326442	2.78739796739043	2.94970172475108	2.38288714516969	2.88051049788791	2.9396495078972	2.81942561568586	2.76419100793138	0.479786814779211	0.4811373796373	0.756402454837075
Merged-chr6-31284628-4	chr6	31284543	31284743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040262, intron 2 of 5)	intron (NR_040262, intron 2 of 5)	64292.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	5.96143430078528	5.41100767840553	5.02164641705842	5.30677919487182	5.5210997172348	5.82820630597795	5.60042261373942	5.74625885082043	0.359352368904391	0.257471107795685	0.569254085430381
Merged-chr15-63601664-4	chr15	63601534	63601734	+	684.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122026.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	3.46785050877286	3.18910363443113	3.41372216952873	3.37805366965409	3.24831529687042	3.6372809883303	3.45427577554737	3.41185840972357	0.254716618756964	0.624398927496479	0.839393596001854
Merged-chr12-102757881-4	chr12	102757783	102757983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025666)	promoter-TSS (NM_025666)	-73.0	NM_001142938	100233175.0	Mm.291222	NM_001142938	ENSMUSG00000091931	Gon7	-	GON7, KEOPS complex subunit homolog	protein-coding	8.24754529018304	8.40388161562416	8.14648354665306	8.31227006614254	8.27973332338327	8.35501275986548	8.24426341717305	8.14736033086492	-0.0323161970042686	0.835862393542329	0.937525731479361
Merged-chr6-125494375-3	chr6	125494386	125494586	+	840.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007657, intron 1 of 7)	CpG	274.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	3.43076783125514	3.00279163669521	3.16573014082608	2.83694839244174	3.28553378548511	3.01528322673092	3.26514494792885	3.16405301579392	0.275846790897396	0.644652622016372	0.850428663772395
Merged-chr12-4548822-4	chr12	4548725	4548925	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24712.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	4.40455987504948	4.94096470431446	4.08936039498937	4.19242337501724	5.00656566201516	4.97712739753471	4.59936159675355	4.61814878225484	0.787577979496583	0.0587396917882098	0.255129980331982
Merged-chr2-77342142-4	chr2	77342043	77342243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61551.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	6.35731719675193	6.05653879278595	6.22864624444184	6.41750207487862	6.12173640153408	6.49808781270998	6.59299919833403	5.98895380692709	0.0600595336752785	0.812883027715578	0.927707691798283
Merged-chr8-25017117-4	chr8	25017030	25017230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007404)	promoter-TSS (NM_007404)	-81.0	NM_027194	69742.0	Mm.28626	NM_027194	ENSMUSG00000031556	Tm2d2	2410018G23Rik|Blp1	TM2 domain containing 2	protein-coding	8.96497424277669	9.15902298401065	8.96635314736865	8.80966283842367	8.89993379870448	9.17673320485589	9.25584514812205	8.81043783923569	0.0850270624740094	0.61768465739554	0.835668216923081
Merged-chr6-59185485-4	chr6	59185386	59185586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23384.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	7.8943809537634	7.56964886673769	7.95180791016056	8.13301446503884	7.8658949568977	7.92886045543189	7.87184016199685	7.56447336894054	-0.121487042872703	0.530627675954816	0.786701673542759
Merged-chr1-134202229-4	chr1	134202176	134202376	+	844.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291930, exon 2 of 2)	3' UTR (NM_001291930, exon 2 of 2)	8828.0	NM_016749	53311.0	Mm.379067	NM_016749	ENSMUSG00000042451	Mybph	AI385643|MyBP-H	myosin binding protein H	protein-coding	3.86993189064535	3.99093891441564	3.59783896029143	3.42758910812006	4.05167212603846	3.83363866249183	3.9476388258489	3.86819128565446	0.582868285313395	0.220763083264858	0.528760195965722
Merged-chr12-78226443-4	chr12	78226333	78226533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145965)	promoter-TSS (NM_145965)	-222.0	NM_172952	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	7.09832809319975	7.05071458257536	7.42942802928804	7.21415675598144	7.22288879950953	7.2523488529337	7.35472795224551	7.47017307301388	0.163657235049975	0.389608125912846	0.689900161563063
Merged-chr4-40279442-4	chr4	40279334	40279534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033305)	promoter-TSS (NM_001033305)	-13.0	NM_001033305	230075.0	Mm.1103	NM_001033305	ENSMUSG00000071014	Ndufb6	CI-B17|Gm137	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	protein-coding	7.0202712591318	7.25796793901668	6.87191175419754	7.09659498312677	7.39856989409256	7.62786605559886	7.27050299087114	7.10319641997324	0.393225954103923	0.0541457045184152	0.242986669713085
Merged-chr8-68392746-4	chr8	68392630	68392830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172753, intron 5 of 9)	intron (NM_172753, intron 5 of 9)	24271.0	NR_038181	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	7.28774898691162	7.13307336206117	7.54522053203041	7.59161152762577	6.80097179081773	6.93050156721754	6.65399015243979	6.87997795777235	-0.811846134635676	8.12429400311888e-05	0.00170382770432528
Merged-chr2-5713452-4	chr2	5713349	5713549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	1313.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	7.47070412039511	7.64632460462163	7.12389046371303	7.65716543136548	7.13215977623529	7.03265719982161	7.19262939282733	7.55561423957157	-0.344920275382444	0.108851251504181	0.364187751228827
Merged-chr17-34952661-8	chr17	34952531	34952731	+	973.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027943)	promoter-TSS (NR_027943)	-160.0	NR_015536	68763.0	Mm.28895	NR_015536	ENSMUSG00000092203	1110038B12Rik	0610009C20Rik|0910001G04Rik	RIKEN cDNA 1110038B12 gene	ncRNA	4.48625809769213	4.84222905394255	4.94410643158321	4.21206244930424	4.42284358102517	4.66133560304298	4.1341086071537	4.39662012693367	-0.512318172640027	0.223185783502432	0.53121133271385
Merged-chr5-30775232-4	chr5	30775135	30775335	+	910.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023047, intron 2 of 12)	(CCCCAG)n|Simple_repeat|Simple_repeat	-39406.0	NM_133350	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	4.94958776374641	5.23375316418958	4.58035074157064	4.7389835829729	5.34148038035082	5.19357842885517	4.85358654455954	5.14530304122295	0.493925713186521	0.152732325988174	0.437108850931294
Merged-chr7-114292130-4	chr7	114292027	114292227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16011.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	5.83600943848896	6.02629878646174	5.96077147064635	6.2013504017664	6.53503396660044	6.06645475172241	6.39574237780676	6.53304052100043	0.567064776238341	0.0210898359982429	0.132648687446379
Merged-chr16-81324661-4	chr16	81324582	81324782	+	917.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113208, intron 1 of 17)	MTE2b|LTR|ERVL-MaLR	123985.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	4.39604494034975	4.3083573870548	4.66627574029611	5.01555986926648	4.67010555068733	4.99174922744642	4.89885498444435	5.10425180401103	0.554230809153013	0.159079043083489	0.446317982169479
Merged-chr19-46045912-4	chr19	46045832	46046032	+	946.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113408)	promoter-TSS (NM_001113408)	-621.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	4.57391964950462	4.54411902051261	4.10017120675886	4.08205004428582	4.62985572058467	4.78628542028131	4.51306337894241	4.94704794280971	0.87470715803556	0.0251189193600109	0.148874804976634
Merged-chr13-68605806-3	chr13	68605722	68605922	+	796.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027035, intron 1 of 2)	MLT1I|LTR|ERVL-MaLR	8383.0	NM_027035	69315.0	Mm.272795	NM_027035	ENSMUSG00000021534	1700001L19Rik	-	RIKEN cDNA 1700001L19 gene	protein-coding	4.17929654298834	3.96263324582667	4.04971288667885	3.70383590422094	3.65985251374869	4.02753611587549	4.16044260481104	3.85022418107916	-0.114547660296092	0.805344438719386	0.925171083261684
Merged-chr16-77019709-1	chr16	77019609	77019809	+	622.5	f0_balb.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	5640.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	3.04807041027828	2.89279669662839	2.9892957076557	3.11383982365539	2.99695543912164	3.03450388432066	2.78615449509507	3.10330103773743	-0.139039420782201	0.815171356846562	0.928710624683246
Merged-chr13-9094345-4	chr13	9094255	9094455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 1 of 17)	(CGGGG)n|Simple_repeat|Simple_repeat	474.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	6.24289383095412	6.52986323900868	6.91325164064321	6.18945679889177	6.29880942330847	6.55378946315674	6.48090830192653	6.31738622106862	-0.113900397012349	0.655398023657289	0.856076057726398
Merged-chr6-108751536-3	chr6	108751439	108751639	+	661.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31520.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	3.3633188974116	3.53536548204689	3.53348013628094	3.45644415480929	3.601547024198	3.20785258386536	3.79929960816671	3.42103438407073	0.18678394309662	0.720403496147003	0.888262296532504
Merged-chr10-96181550-4	chr10	96181435	96181635	+	902.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-44672.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	4.72107657229168	4.69665063359404	5.04916295317366	5.07440415375528	4.83098469249113	4.93849806412298	4.99222677139649	5.16764940877351	0.144903088621011	0.66517026794209	0.861308977657814
Merged-chr4-132039043-4	chr4	132038925	132039125	+	825.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	LTR104_Mam|LTR|Gypsy	10053.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	4.60648790399593	3.64009892152188	3.67212444274906	3.63904142954145	3.69083328365247	3.7337346859721	4.29652357934348	3.54571096712237	-0.299804601819002	0.599764450946381	0.826560500894977
Merged-chr10-88409982-4	chr10	88409897	88410097	+	906.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 2 of 20)	MLTR25A|LTR|ERVK	30585.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	4.21127732795373	4.11916164878303	4.2561648248092	4.11128267565754	4.29735325280584	3.97294923493853	4.19336270085073	4.45375098569727	0.188552007323527	0.639483204272314	0.847607151813091
Merged-chr4-82859658-4	chr4	82859541	82859741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026647)	promoter-TSS (NM_026647)	32.0	NR_149737	68268.0	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	6.10004815103883	6.30839611446429	7.04344094971294	6.41696900222682	6.18456977561775	6.57382325948545	6.21607533124347	6.32053877101846	-0.27451674334935	0.320995846593935	0.632737838956237
Merged-chr4-43251489-1	chr4	43251389	43251589	+	600.0	f1_c57bl6.idr	intron (NM_001081413, intron 26 of 39)	intron (NM_001081413, intron 26 of 39)	-15670.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	2.84119901638916	2.76208363721184	2.6229275195171	3.08695814661865	3.15516288780723	3.13900041888578	3.07414425514903	3.08466431347916	1.07782947443743	0.101373343697144	0.349341562610912
Merged-chr16-45742912-4	chr16	45742812	45743012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001272070)	promoter-TSS (NM_001272070)	43.0	NM_001272070	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	7.52634457329798	7.38020739773351	7.74573735930014	7.45547716313854	7.55798910964045	7.69568356369441	7.81812195785916	7.35613541493288	0.116035602777112	0.543289188613617	0.794387451855559
Merged-chr16-38321583-4	chr16	38321490	38321690	+	796.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081025, intron 8 of 16)	intron (NM_001081025, intron 8 of 16)	20270.0	NM_001081025	320214.0	Mm.294342	NM_177104	ENSMUSG00000022805	Maats1	4932425I24Rik|Aat1|CFAP91|Spata26	MYCBP-associated, testis expressed 1	protein-coding	3.64682344765402	3.92624409614797	3.64727738015349	3.94087522639147	4.00563587307107	3.8247163373543	4.235996891645	3.91471801672221	0.539307836816699	0.238597713465844	0.548972916561797
Merged-chr11-94521467-4	chr11	94521365	94521565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170671)	promoter-TSS (NM_170671)	37.0	NM_170671	104601.0	Mm.84725	NM_170671	ENSMUSG00000039110	Mycbpap	4932408B01Rik|AMAP-1|AW125474	MYCBP associated protein	protein-coding	5.16732338253361	5.60323515353245	5.44494907815244	5.19603497498881	5.41316339532462	5.27564905089784	5.38993481398415	5.52131214934829	0.0832343861411837	0.775957009399604	0.912621347852849
Merged-chr15-51701592-2	chr15	51701492	51701692	+	708.458374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	163869.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	3.31800229348697	3.04688053855497	3.20255538280733	2.91111788855162	3.7065654170799	3.31377889577271	3.35909788694892	3.31664390453247	1.26142862344505	0.0256208166329839	0.151000874865946
Merged-chr16-18248096-3	chr16	18247990	18248190	+	871.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080999)	promoter-TSS (NM_001080999)	604.0	NM_011239	19385.0	Mm.235287	NM_011239	ENSMUSG00000005732	Ranbp1	Htf9a	RAN binding protein 1	protein-coding	3.92876669380944	3.68578442903962	3.92934311961872	3.94236959377128	3.73289392658289	4.00096230621934	3.95999839495541	4.10833884449715	0.200279829621529	0.651421103145361	0.853936064978361
Merged-chr2-133512825-4	chr2	133512709	133512909	+	993.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39350.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	5.34113171412924	5.03849653253295	5.64416484278095	5.87594399252237	5.61314195916306	5.38969635086999	5.6630504999907	5.20808267851313	-0.0757318367534076	0.818707066351016	0.930475502974644
Merged-chr3-97297291-4	chr3	97297157	97297357	+	826.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69893.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	3.96749914265467	3.58480796264977	4.05378791997254	3.67483319941088	3.47803520471983	3.67154053650732	3.59901108600641	4.0511169126326	-0.333316757965727	0.508015824056323	0.773229088859297
Merged-chr19-6870968-4	chr19	6870870	6871070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	-12759.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	5.72973409992755	6.58836878126599	5.73077010805219	4.14760026444083	6.2752731058705	6.23620320584243	5.45463223396129	5.17380682529382	0.0504906969636646	0.949955854369892	0.982132039459575
Merged-chr8-105930818-4	chr8	105930717	105930917	+	809.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173432, exon 3 of 3)	3' UTR (NM_173432, exon 3 of 3)	3045.0	NM_023182	109660.0	Mm.2745	NM_023182	ENSMUSG00000031896	Ctrl	0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366	chymotrypsin-like	protein-coding	3.61049595445043	4.07630777589693	3.49006959344784	3.54722882749047	3.94306422769552	3.60661039377581	3.90096270576215	3.86965566425407	0.406309563753056	0.409604196249931	0.705214871926678
Merged-chr19-5447727-4	chr19	5447758	5447958	+	932.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010235, exon 1 of 4)	5' UTR (NM_010235, exon 1 of 4)	160.0	NM_010235	14283.0	Mm.6215	NM_010235	ENSMUSG00000024912	Fosl1	AW538199|Fra1|fra-1	fos-like antigen 1	protein-coding	3.51650597342947	3.95674937166051	3.51696364340863	3.31081852089649	3.78952944411145	3.57374450878375	3.44492879689542	3.86916045187529	0.276898073786577	0.597899022060622	0.825632463572035
Merged-chr13-24965695-3	chr13	24965584	24965784	+	597.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008156, intron 11 of 25)	ERVB7_2-LTR_MM|LTR|ERVK	22532.0	NM_008156	14756.0	Mm.291831	NM_008156	ENSMUSG00000021340	Gpld1	6330541J12Rik|AW546131	glycosylphosphatidylinositol specific phospholipase D1	protein-coding	3.42479664839997	3.14900644097895	3.4252957774134	3.09682045190664	3.28731685750117	3.11403022964674	3.30524933593368	3.37097085032818	0.00823254963032808	0.988045491280904	0.995370064932717
Merged-chr7-10495442-4	chr7	10495324	10495524	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009577)	promoter-TSS (NM_009577)	-43.0	NM_009577	22775.0	Mm.49441	NM_009577	ENSMUSG00000030393	Zik1	-	zinc finger protein interacting with K protein 1	protein-coding	4.61475051662226	4.50124585877491	4.92975799090656	5.0564617247841	4.8499602189949	5.03206810873345	5.26383964232972	4.92642538191204	0.418835062234697	0.240358487913059	0.550870712287303
Merged-chr10-13941625-4	chr10	13941524	13941724	+	744.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24451.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.44310897874641	4.68388493374626	4.30673909232801	4.41431838264644	4.52741749343146	4.84977571835266	4.3801640937079	4.48358452108908	0.222737973469537	0.552144364298644	0.799371172712563
Merged-chr16-31883787-3	chr16	31883687	31883887	+	796.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013900, exon 4 of 16)	exon (NM_013900, exon 4 of 16)	4977.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	4.03167307912179	4.36532324219038	4.25475210287499	4.04107574190062	3.9108189386684	3.94274776879269	4.06231956424562	3.92897217588239	-0.573521969518917	0.177424667033338	0.472806643808905
Merged-chr10-60934511-4	chr10	60934419	60934619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033616, intron 1 of 2)	intron (NR_033616, intron 1 of 2)	3613.0	NR_033616	73616.0	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	7.70317859170839	7.75543067702617	7.58365181598002	7.92961419149691	7.78609943376466	8.0651150004254	7.59080382696658	7.6229337294217	0.0278863482790965	0.883132356360583	0.955994737862182
Merged-chr2-165982703-4	chr2	165982602	165982802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9935.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	6.11263503848627	6.58429655918368	6.29918088507801	6.23474231880207	6.69927852781183	6.76410264611564	6.30450523603672	6.43932677664751	0.367093362735688	0.122670842006003	0.388184087959568
Merged-chr3-95893869-4	chr3	95893790	95893990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146134)	promoter-TSS (NM_146134)	-31.0	NM_146104	226548.0	Mm.306954	NM_146104	ENSMUSG00000015750	Aph1a	6530402N02Rik|APH-1a	aph1 homolog A, gamma secretase subunit	protein-coding	7.69422864108273	7.952383279223	7.44721463848482	7.41386845290617	7.58195912689488	7.51208341755119	7.72808776420496	7.36105907437035	-0.11597213734089	0.566762673544254	0.807995520353438
Merged-chr7-75668598-2	chr7	75668498	75668698	+	825.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 10 of 36)	intron (NM_029332, intron 10 of 36)	-179740.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	2.5858259336929	2.96769985603382	2.79973733008732	2.54172341816857	2.81222932807739	3.15285625594545	2.85356586108698	2.98230114308809	1.00864449436175	0.120102344277636	0.383662362594824
Merged-chr8-4239549-1	chr8	4239449	4239649	+	745.0	f1_c57bl6.idr	promoter-TSS (NM_001291778)	promoter-TSS (NM_001291778)	-556.0	NM_001291783	26400.0	Mm.3906	NM_011944	ENSMUSG00000002948	Map2k7	5930412N11Rik|JNKK 2|Jnkk2|MAPKK 7|MEK 7|Mapkk7|Mek7|Mkk7|Prkmk7|sek2	mitogen-activated protein kinase kinase 7	protein-coding	3.46850039409073	3.92049383804825	3.58863401362313	3.76401906701475	3.80322376132741	3.64571181347464	3.78341838357121	3.79721428722825	0.168724863412856	0.722179100751914	0.889145957666795
Merged-chr14-27508457-4	chr14	27508355	27508555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177111)	promoter-TSS (NM_177111)	5.0	NM_177111	320234.0	Mm.247767	NM_177111	ENSMUSG00000046753	Ccdc66	E230015L20Rik	coiled-coil domain containing 66	protein-coding	6.71460709037026	6.20455215449446	6.61899587029883	6.50086223175591	5.99286494729371	6.24553119087999	6.05868362817372	6.06338668257366	-0.650316179761663	0.00615706915915593	0.0552752531151469
Merged-chr5-150176797-3	chr5	150176696	150176896	+	969.4166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83134.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	3.59748523379089	3.41574413129368	4.40542932359319	3.33091635092355	4.4970220348346	4.08814700428183	4.52441210529883	4.43943676045232	1.63798287075914	0.00262366209987401	0.028788291137187
Merged-chr15-5576806-4	chr15	5576694	5576894	+	955.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045274, intron 2 of 4)	intron (NR_045274, intron 2 of 4)	80476.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	4.95311865033562	4.63750474470298	4.58246334339356	4.68086722379692	4.868112866519	4.80008739894081	4.47351161394617	5.04344023435571	0.202266409586986	0.567516998059006	0.808303453536389
Merged-chr10-44625801-4	chr10	44625689	44625889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167041.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.8876328827023	7.15288171761402	6.98931520502325	6.38239187278658	7.00521611135499	6.77310741535434	6.73077539017679	6.43286703473522	-0.162753002703552	0.523222532205115	0.782449675195448
Merged-chr11-116101773-2	chr11	116101673	116101873	+	917.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8462.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	2.71088142119171	3.03520372878912	3.1554346795909	2.92420408111669	2.85314577162166	3.09266075665706	3.03156843879466	3.09877751460815	0.227586084402526	0.707659185594863	0.882529695648857
Merged-chr17-45563388-3	chr17	45563277	45563477	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357105)	promoter-TSS (NM_001357105)	-559.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	5.54632687092828	5.94759775221739	4.67528102193611	4.77856423075028	5.16789034226289	5.32742492959765	5.15770265425031	5.00703034841426	-0.321437025769159	0.433032072859123	0.722758873865112
Merged-chr7-139377593-4	chr7	139377481	139377681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11528.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	7.03413961955592	6.76265026885575	6.65971467704732	6.91459167427714	6.95354673982948	7.24706798056228	7.13588811005346	6.89070470296531	0.286138048422883	0.162848371092858	0.452364775328072
Merged-chr1-152090339-4	chr1	152090230	152090430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197990)	promoter-TSS (NM_197990)	-10.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	5.68046803607284	5.67905775607498	5.72616473403695	5.47099016032814	5.00530154260757	4.98104039839817	5.09149351649994	5.11287083916532	-1.06317389600029	0.000275992567353085	0.00473941494610982
Merged-chr9-61705810-4	chr9	61705718	61705918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	208692.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	5.90709647672023	6.06088507078612	5.59871604264358	5.95590292655951	5.99733280187671	6.36671656838928	5.90054403114235	5.67935203270145	0.172708430890664	0.527485257317148	0.784385491451589
Merged-chr5-123714857-3	chr5	123714756	123714956	+	781.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027494, intron 3 of 13)	intron (NM_027494, intron 3 of 13)	6188.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	3.59388874820351	3.7639725022712	3.47998682280047	3.71148359020803	3.89301400183044	3.53252217528513	3.52538159873422	3.69731534243387	0.100863010000173	0.836371751753625	0.937720204739175
Merged-chr3-126628123-3	chr3	126628028	126628228	+	743.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	31177.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	3.09329386712828	3.24866553744779	3.37940663887005	3.25660090805079	2.97641069487134	3.26722956411443	3.14490263810596	3.32523074712377	-0.266089530297557	0.63406773253286	0.84498440676171
Merged-chr14-8081019-4	chr14	8080901	8081101	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025938, intron 1 of 5)	intron (NM_025938, intron 1 of 5)	688.0	NM_025938	67053.0	Mm.210048	NM_025938	ENSMUSG00000023156	Rpp14	2610511E03Rik|AA682089	ribonuclease P 14 subunit	protein-coding	5.65284723419696	5.52114228171901	5.40812531776037	5.78248555606893	5.59637748526215	5.16768736640472	5.67353688840109	5.59926604237642	-0.139546767890482	0.626722710672975	0.840727549606008
Merged-chr7-79846758-4	chr7	79846664	79846864	+	927.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008486, intron 1 of 20)	intron (NM_008486, intron 1 of 20)	1446.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	4.52478318666697	4.44883333948117	4.86478727613675	4.51420358764402	4.83341013044896	4.47028975649897	4.73868498871781	4.82801061220481	0.305207776295661	0.393443186825643	0.692576805225404
Merged-chr9-116169227-2	chr9	116169133	116169333	+	676.5	f0_balb.idr|f1_balb.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	6130.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	2.69517639805282	2.88435650213404	2.69551303346583	2.9647068276332	2.51189423460897	2.44983798112926	2.42083469453347	2.42555752983172	-2.08665266449956	0.00607105404243214	0.054727907255101
Merged-chr9-105131807-4	chr9	105131717	105131917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029385)	promoter-TSS (NM_029385)	-12.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	7.22660270051259	7.31117909299597	7.04294965032433	7.25512544289142	7.68855853132967	7.77050181257338	7.99113020894329	7.52666229234192	0.712863122631546	0.000150198090544536	0.00285625163955905
Merged-chr17-56990265-4	chr17	56990182	56990382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017393)	promoter-TSS (NM_017393)	18.0	NM_017393	53895.0	Mm.287892	NM_017393	ENSMUSG00000002660	Clpp	AU019820|D17Wsu160e	caseinolytic mitochondrial matrix peptidase proteolytic subunit	protein-coding	7.35060240896681	7.25794114105767	6.66050655175545	7.3638641635291	7.31639154635531	7.44605383609016	7.68467979110964	7.29557021799901	0.331284905375109	0.139116954261999	0.414734699590166
Merged-chr16-57914788-1	chr16	57914688	57914888	+	656.0	f0_balb.idr	Intergenic	Lx8b|LINE|L1	-160051.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	2.81706610416081	2.66396132936659	2.98401688674156	2.9040864217159	2.2940341703082	2.66092906138133	2.68386896369328	2.62494549360596	-1.45576776194962	0.0514707390005614	0.235686898603234
Merged-chr9-32539436-4	chr9	32539354	32539554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	1998.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	6.97598758621147	6.81718562413944	6.91365193384529	7.27013890779476	6.67376908505145	6.8312779231005	6.85238038856467	6.68071791338145	-0.367218420933308	0.0823245836568119	0.31149168297407
Merged-chr18-60624498-3	chr18	60624407	60624607	+	885.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177340)	promoter-TSS (NM_177340)	-202.0	NM_177340	104027.0	Mm.252321	NM_177340	ENSMUSG00000043079	Synpo	9030217H17Rik|9130229N11|9330140I15Rik|AW046661	synaptopodin	protein-coding	3.12623911500884	2.97069169983177	3.28656421138349	3.29518275087378	3.13176497155726	2.90856348266371	2.86838037219582	3.18078611171079	-0.600483650151375	0.319074608579502	0.630946296506678
Merged-chr1-93444924-3	chr1	93444825	93445025	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133808, intron 1 of 27)	intron (NM_133808, intron 1 of 27)	776.0	NM_001301364	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	6.15039979504623	6.26043532907727	5.89940034127078	6.41107422673736	6.37762614477526	6.36863443745879	6.47747126510035	6.39180483775448	0.285485231981717	0.224716213814352	0.533204797899567
Merged-chr19-43524644-4	chr19	43524527	43524727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010324)	promoter-TSS (NM_010324)	-22.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	8.65993029920238	8.5606391421705	8.73964719668395	8.85730561371859	8.94108212609333	8.73073405447732	9.08119850264922	8.77156162101451	0.222500602852448	0.16742906916265	0.459084932464399
Merged-chr4-153975134-4	chr4	153975065	153975265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007859)	promoter-TSS (NM_007859)	-84.0	NM_007859	13368.0	Mm.388918	NM_007859	ENSMUSG00000029027	Dffb	40kDa|5730477D02Rik|CAD|CPAN|DFF40|Didff	DNA fragmentation factor, beta subunit	protein-coding	7.8562047453179	7.69464447535131	7.43825792228653	7.76702908669071	7.7152967484035	7.98288170709818	7.91037446378972	7.62137252588981	0.144792337448573	0.432793227153621	0.722617800775084
Merged-chr9-54676754-4	chr9	54676651	54676851	+	795.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14866.0	NM_053178	94180.0	Mm.20592	NM_053178	ENSMUSG00000032281	Acsbg1	BG1|Bgm|E230019G03Rik|GR-LACS|Lpd|R75185	acyl-CoA synthetase bubblegum family member 1	protein-coding	3.32351519353651	3.99036468480878	4.10553061645754	3.50832407127216	3.57980243208172	3.96902402013299	3.73105332334915	3.51962279916224	-0.174068853234871	0.748083156250086	0.900815396053715
Merged-chr7-35117170-3	chr7	35117046	35117246	+	952.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2147.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	4.28901270397821	3.73814793651341	4.12996109895689	4.83473867479294	3.2862409644507	3.46076371690332	3.53789710758009	3.61306437430716	-2.58138590899137	6.22907913984906e-06	0.000180455687462481
Merged-chr4-152138697-4	chr4	152138590	152138790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207687, intron 4 of 15)	CpG	-2365.0	NM_207690	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	8.09874345047612	7.99974508817813	7.87754271535295	7.95907521263691	8.11914725309608	8.24543994983443	8.25537668440228	8.38335332364057	0.340826881506002	0.0326803624052033	0.177163405608527
Merged-chr3-51396676-4	chr3	51396583	51396783	+	881.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026358)	promoter-TSS (NM_026358)	-136.0	NM_026358	67749.0	Mm.273339	NM_026358	ENSMUSG00000037161	Mgarp	4930583H14Rik|AI195347|CESP-1|HUMMR|Osap|Qsap	mitochondria localized glutamic acid rich protein	protein-coding	4.30693577599173	4.52576447534135	4.89693226583841	4.42843279083728	4.05273407957585	4.28674453009314	4.37816877540346	4.59673959810933	-0.500937976762797	0.221195512715256	0.529279436567022
Merged-chr11-63788222-4	chr11	63788087	63788287	+	959.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134097.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	4.94665561941309	4.48899961337637	5.21521841378783	4.97540107428572	4.49726315789458	4.50334825078278	4.74702360339924	5.03978568563432	-0.447295984026922	0.239121701355637	0.549600505217823
Merged-chr16-3744472-1	chr16	3744372	3744572	+	1000.0	f0_balb.idr	exon (NM_148924, exon 1 of 6)	exon (NM_148924, exon 1 of 6)	373.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	5.91764148009062	6.33509224323956	6.03168133719863	5.83811333251237	6.39228044888529	6.0231975872354	5.97920015201236	6.13100671975468	0.177644465511156	0.492546383294184	0.763578843413703
Merged-chr10-83353980-4	chr10	83353835	83354035	+	863.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6286.0	NM_026579	28109.0	Mm.196210	NM_026579	ENSMUSG00000020255	D10Wsu102e	AI747614|C430041I18Rik	DNA segment, Chr 10, Wayne State University 102, expressed	protein-coding	4.32159302203985	4.73755656266441	4.36473126046834	3.44967597378526	4.55008626999467	4.31518382200934	3.96275807619732	4.18331686544223	-0.0764989324195321	0.883556150143327	0.956264436739578
Merged-chr7-96730568-4	chr7	96730466	96730666	+	911.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 9 of 32)	intron (NM_011858, intron 9 of 32)	70983.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	4.82046855133534	4.23216565056355	5.04601666672807	5.12616998788298	4.42168349415053	4.54263528173899	4.96094929395542	4.40775211774626	-0.536475128893663	0.199024546650647	0.500808435183879
Merged-chr5-144283812-4	chr5	144283731	144283931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025833, intron 7 of 13)	Kanga2_a|DNA|TcMar-Tc2	6770.0	NR_040432	100504231.0	Mm.441035	NR_040432	ENSMUSG00000086894	Gm15708	-	predicted gene 15708	ncRNA	7.11282034929434	6.97299051755255	7.09132115367255	7.25275872141067	6.77283678175733	6.68074130079278	6.68592944693899	6.95336719241321	-0.474185245403369	0.0168350015783376	0.113776991058234
Merged-chr9-120915294-4	chr9	120915181	120915381	+	883.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040742)	promoter-TSS (NR_040742)	-31.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	4.75143310069706	4.89688840778203	4.48034784006107	4.38083634535809	4.76011514337885	4.47320103730922	4.37153953433269	4.47752494015632	-0.211309795341327	0.58391714992808	0.817485282428486
Merged-chr11-21082908-4	chr11	21082794	21082994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8430.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	7.02822609430772	7.28136494048201	6.32059229762757	6.69563984602707	6.99850554894535	7.25308049724302	7.09751248706045	6.75704103779178	0.218290580125552	0.396849891172543	0.695457035324382
Merged-chr10-93256904-4	chr10	93256808	93257008	+	928.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	54251.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	5.1348291998236	5.22228012657264	5.92206918972299	5.40048094458747	4.72653952132814	5.06049432218854	4.93455152925576	4.95505132485566	-1.00760028146761	0.00328165898434335	0.0342349706648945
Merged-chr11-106033543-3	chr11	106033441	106033641	+	942.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037712, intron 12 of 12)	IAPLTR1_Mm|LTR|ERVK	-3331.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	2.95098222191059	3.1489091839456	3.19539433517987	2.36140193172568	3.61328156788188	4.62214430456548	3.83333158144272	4.10860829822102	3.8582126982187	0.00472453303493728	0.0455674169232792
Merged-chr2-157373897-4	chr2	157373796	157373996	+	856.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026968, intron 1 of 2)	MARNA|DNA|TcMar-Mariner	6302.0	NM_026968	69161.0	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	4.14990145535957	4.40298557827606	4.10309624937433	4.40220745560772	4.05391068095923	4.17759412474278	3.93397331981789	4.1936751542167	-0.488719629703797	0.234838818132329	0.544694741783141
Merged-chr16-92825398-4	chr16	92825312	92825512	+	988.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	662.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.6346327183035	4.72807494594169	5.19929827178866	4.97236838213099	4.98547324357079	4.93768885915479	4.92446565390863	5.07658894205161	0.152446834864441	0.647263144752112	0.851605116430591
Merged-chr7-19818559-4	chr7	19818437	19818637	+	918.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033601, intron 2 of 8)	intron (NM_033601, intron 2 of 8)	4218.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	4.24523488592592	4.2764657501096	4.44214832706952	3.93511133947807	3.88041059542921	3.97417677903834	3.89220244524731	4.2849096327364	-0.549799520826836	0.214523353029438	0.520353182806768
Merged-chr13-51401363-4	chr13	51401260	51401460	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7258.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	5.13359278022499	5.54992965440799	5.65940594102642	5.92418944901587	5.46789784735816	5.75598328339174	5.81735720820976	5.65539896350414	0.0950519328408353	0.755233079891729	0.903634896880696
Merged-chr13-92274657-4	chr13	92274542	92274742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311120, intron 14 of 23)	intron (NM_001311120, intron 14 of 23)	-80141.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	6.78913244456103	6.86827055347317	7.095867109244	7.55341536872505	6.68752047845689	6.5259942624098	6.69698048008282	6.79981939013795	-0.626531149410958	0.0100468653329184	0.0791769073883744
Merged-chr3-121548268-4	chr3	121548153	121548353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15909.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	6.75505113973491	7.32442538800038	6.97011755886438	6.90005084169974	7.20089903641317	7.22342204284625	7.32454665536528	7.22473695593349	0.326346392900786	0.10997324574833	0.366215108014911
Merged-chr15-50696124-4	chr15	50695988	50696188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	192961.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	6.43068837785552	6.99153249524007	6.32728608016224	6.16436753589871	6.18235505120246	6.02765885450317	6.200994607491	6.03896087773796	-0.595593950761973	0.0281075809241827	0.160477063966933
Merged-chr1-163975285-4	chr1	163975188	163975388	+	957.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357049, intron 10 of 24)	intron (NM_001357049, intron 10 of 24)	19508.0	NM_001357049	381306.0	Mm.28152	NM_201364	ENSMUSG00000041406	BC055324	-	cDNA sequence BC055324	protein-coding	4.69528809017589	4.69752381417215	4.37843008587446	4.94481643104614	4.92728307133088	4.90971631459384	5.08030610152364	4.84463917352721	0.460522716681428	0.191434077029357	0.490854206495116
Merged-chr3-98060038-4	chr3	98059930	98060130	+	936.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	46492.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	4.77578969316762	4.56774990262441	5.16662031446268	5.36500545814763	4.82886667930473	4.40318491699892	4.75395738462198	4.65396937689319	-0.702083829563372	0.0707718035628195	0.28523108577079
Merged-chr2-25423265-4	chr2	25423182	25423382	+	918.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013524)	promoter-TSS (NM_013524)	40.0	NM_001289456	14347.0	Mm.1203	NM_013524	ENSMUSG00000036587	Fut7	AI853193|FTVII|Fuc-TVII|FucT-VII	fucosyltransferase 7	protein-coding	4.71300235478549	4.50070618844499	4.3723861813127	4.32896447882969	4.35958822532138	4.09242960077383	4.11710260910725	4.64243780106394	-0.361123844429235	0.374669498323459	0.677891254741963
Merged-chr17-24007130-4	chr17	24007029	24007229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9029.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	6.84575342165094	6.29964002988989	7.02121888705426	6.67748696799563	6.96443701719152	6.83677344045146	6.71539379475437	6.59171207836521	0.0835199686331749	0.723665131839882	0.889725367382301
Merged-chr16-77300687-4	chr16	77300591	77300791	+	902.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28637.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	4.37347399455791	4.38225125975926	4.61742186866129	4.73943549683237	4.40049909268606	4.50293232730612	4.44028910801877	4.2790166253697	-0.331785094532822	0.379577994851011	0.682134470195419
Merged-chr1-182368956-3	chr1	182368860	182369060	+	973.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27354.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	4.56675482151217	4.08376968629661	4.16954620564319	4.1754790354196	4.4375325241803	3.91476240959361	4.05548512274331	4.25717434268725	-0.157726042122927	0.715174592376669	0.886010584897636
Merged-chr7-28442962-4	chr7	28442862	28443062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039192, intron 3 of 6)	intron (NM_001039192, intron 3 of 6)	2025.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	7.95140245958284	7.94711960162042	7.64646640586041	7.57621010829973	7.83463127618615	7.9863291955085	7.72465708491975	7.68386748532064	0.035234769970038	0.84890193244919	0.942921233783246
Merged-chr6-92092809-1	chr6	92092709	92092909	+	982.0	f0_balb.idr	5' UTR (NM_001347342, exon 1 of 15)	5' UTR (NM_001347342, exon 1 of 15)	376.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	4.2675584236411	4.16806955619402	4.08156761283277	4.17837259476245	4.30822382722558	4.15420149330789	4.48335495656138	4.12837491580667	0.257199749564495	0.514932910710309	0.7773081172237
Merged-chr14-20861396-4	chr14	20861298	20861498	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D-int|LTR|ERVL-MaLR	24736.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	4.75136599671512	4.47460648648511	4.50184597430626	5.11143005133607	4.77129235691005	4.84814730142904	4.80272196682095	4.89207715794832	0.13477102510039	0.71723073845921	0.886969736012834
Merged-chr4-155122856-3	chr4	155122780	155122980	+	952.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356327, intron 10 of 12)	intron (NM_001356327, intron 10 of 12)	36276.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	3.56695996674681	4.03231578731356	3.80672976997742	3.93344441272863	2.91273515428463	3.09819074752266	3.1964932833217	3.13516424400348	-3.16750680429295	1.65641821783673e-06	5.53012159134148e-05
Merged-chr17-34238914-3	chr17	34238835	34239035	+	969.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010389)	promoter-TSS (NM_010389)	30.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	3.52155397417726	3.69771300467462	3.34263349211311	3.18625644018207	3.93554157341587	3.58125924000119	3.45184592050858	3.67756648144438	0.762296030446103	0.146559148197805	0.426967777286073
Merged-chr11-32455918-4	chr11	32455830	32456030	+	959.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361561, intron 1 of 1)	CpG	560.0	NM_173784	327900.0	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	4.27602769464685	4.55971372959115	4.59115303816844	4.50137590430942	4.29924441372082	4.9474293509351	4.09881511444852	5.13041516612386	0.428329312836615	0.330614929262346	0.641981554220558
Merged-chr1-67382531-4	chr1	67382425	67382625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3b|LINE|CR1	259498.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	6.26586679594677	6.24989719955933	5.90745737714828	6.30851855699862	6.39478964393496	6.24415572786803	6.03708473286493	6.0199015003189	-0.0146653612961695	0.95223345919673	0.983110341498473
Merged-chr17-5975843-3	chr17	5975732	5975932	+	984.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001113353, exon 2 of 27)	exon (NM_001113353, exon 2 of 27)	246.0	NM_011523	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	3.75918867030765	3.38722972988728	3.51785045322869	3.69007362640847	3.29404957156156	3.11339286521541	3.69828042329429	3.28331676764653	-0.787660569851916	0.156186121663112	0.442021137941209
Merged-chr6-134172540-4	chr6	134172441	134172641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	MTD|LTR|ERVL-MaLR	136841.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	5.66654907785614	5.68709206125486	5.94886446856115	5.9470736988792	5.52017708565335	5.76271112715902	5.63895937841016	5.92345190696355	-0.190840554460399	0.473369561583999	0.751141895891108
Merged-chr13-44416198-3	chr13	44416089	44416289	+	975.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23538.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	4.37987296882871	4.38150198053723	4.02997362405012	4.42227565576662	3.92515256595565	4.04759897603748	3.909619972421	4.02763574290116	-0.901151987581522	0.0314077461899556	0.172609573873879
Merged-chr1-13267638-4	chr1	13267465	13267665	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 2 of 22)	(CCG)n|Simple_repeat|Simple_repeat	104864.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	3.99302664834706	3.83981466781492	4.18244600068923	3.95517046789341	4.14414149765303	4.06513127025229	3.97692967101906	4.52271873190224	0.519531917215168	0.225717885662438	0.534241429840117
Merged-chr19-60467852-2	chr19	60467724	60467924	+	761.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_201615, exon 1 of 1)	exon (NM_201615, exon 1 of 1)	480.0	NM_201615	226278.0	Mm.377241	NM_201615	ENSMUSG00000045052	Prlhr	Gm339|Gpr10|Gr3|Prrpr	prolactin releasing hormone receptor	protein-coding	2.23173779257296	2.36660752854435	2.2319171072666	2.29131910477375	2.36923720656603	2.61520867815203	2.55980495360204	2.5687929918959	1.38695267223002	0.0531399142892343	0.240444860259687
Merged-chr12-75853713-4	chr12	75853616	75853816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005510, intron 1 of 115)	intron (NM_001005510, intron 1 of 115)	35398.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	5.92734590325115	6.0185374262173	6.42193329075755	6.9431125973366	5.93054074928782	5.78326134937367	6.15751558090457	6.20438470756518	-0.581814944594858	0.0595447200523863	0.257180438629175
Merged-chr1-165583735-4	chr1	165583638	165583838	+	987.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50803.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	5.31832111417047	5.30543671114043	4.973698975799	5.44808689618487	5.29277696320307	5.58012348465615	5.43486428449899	5.48521828288725	0.277533068827296	0.348629300376025	0.656307354205775
Merged-chr4-141652318-6	chr4	141652162	141652362	+	889.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	11853.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	2.84022390487979	2.95856813634747	2.63017554854027	2.6941226199192	2.88434165823852	3.01318687265215	3.11657406441347	2.96278615768861	0.932140488682827	0.127992590018316	0.398128941350073
Merged-chr7-4725419-4	chr7	4725317	4725517	+	746.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177887)	promoter-TSS (NM_177887)	-166.0	NM_177887	330460.0	Mm.361851	NM_177887	ENSMUSG00000046456	Tmem150b	A630041N19|Tmem224	transmembrane protein 150B	protein-coding	3.44699368243279	3.62639876092704	3.50250641481593	2.97976980640731	3.76402490812694	3.31450071025658	3.4338964108227	3.50050748630645	0.379566408670225	0.504151750037434	0.770626277304553
Merged-chr2-132265395-4	chr2	132265302	132265502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	2254.0	NM_138651	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	5.88890312878533	5.94108607386797	5.98600417376204	6.32292393194794	6.4883642026449	6.2083362184655	6.41320599545963	6.3414819037804	0.459945793181474	0.0609464219173791	0.260925815760845
Merged-chr9-83727715-3	chr9	83727617	83727817	+	927.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36242.0	NR_046066	100039222.0	Mm.405596	NR_046066	ENSMUSG00000100155	Gm2109	-	predicted gene 2109	ncRNA	4.09823590953274	4.47736948164951	4.55975018174348	4.24299851177055	4.06753220311596	4.11815487602687	4.39027280276184	4.04510699932473	-0.47588102169436	0.250063617559687	0.561172779944542
Merged-chr11-59554881-4	chr11	59554758	59554958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 5 of 9)	intron (NR_153314, intron 5 of 9)	12172.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	6.69659983793476	6.82937449308425	6.63854128456627	6.64859276484935	6.63968342174435	6.46932117358654	6.37325694313926	6.3455168500632	-0.336977754850381	0.112764875939217	0.371304579936048
Merged-chr2-170002784-4	chr2	170002683	170002883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	YREP_Mm|Unknown|Unknown	-39596.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	6.03391154189499	5.66188773194808	6.18253960314319	6.45357535900345	6.31162220535025	6.37808672642432	6.06910302062722	6.58241051155145	0.327381050531102	0.235872105133267	0.545896142740888
Merged-chr2-60120875-4	chr2	60120754	60120954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	4886.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	6.49868572061015	6.9774372189105	6.63216455574099	6.98045844741908	6.91492621596175	6.51084384058047	6.62921055987844	6.49519344503615	-0.202879144473595	0.386661278802381	0.687770216087633
Merged-chr7-12922227-4	chr7	12922136	12922336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009095)	promoter-TSS (NM_009095)	-75.0	NM_009095	20103.0	Mm.5291	NM_009095	ENSMUSG00000012848	Rps5	AA617411	ribosomal protein S5	protein-coding	9.10831480236853	9.09497895187768	8.91304138509393	8.98401174289272	9.05806085161503	9.02022167151517	9.16321507400355	8.94490836971107	0.0281148404419028	0.844276832580166	0.940906866652424
Merged-chr19-17176878-4	chr19	17176796	17176996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 10 of 19)	A-rich|Low_complexity|Low_complexity	162609.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	6.15664621177004	6.04129371331231	5.89349869137917	6.3699133248508	6.43376147192116	5.99616542575726	6.14584776960597	6.09231736362877	0.0701539112165589	0.783151195870507	0.91550064824298
Merged-chr9-9082846-3	chr9	9082751	9082951	+	863.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027823, intron 4 of 22)	LTR16E2|LTR|ERVL	-153437.0	NR_045754	100579151.0	Mm.412450	NR_045754	ENSMUSG00000085253	Gm16833	-	predicted gene, 16833	ncRNA	3.53216870872576	3.45474591879034	3.53263996281876	3.49602093074241	3.91954175668696	3.46923433113248	3.51901023773294	3.58457927621902	0.463075159156147	0.349129590561677	0.656765556493198
Merged-chr10-91182769-3	chr10	91182645	91182845	+	787.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11126.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	3.92742400431978	3.54242638868869	3.97303783717859	3.70641953763972	3.51787473813398	3.6145460263991	3.76676926241245	4.09633553139002	-0.0818527759512139	0.868615769582346	0.950762137632278
Merged-chr13-12106899-3	chr13	12106729	12106929	+	843.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023868, exon 1 of 105)	5' UTR (NM_023868, exon 1 of 105)	116.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	3.66929095818448	3.52139235995215	3.66985029727015	3.27278057770405	3.480639305975	3.46215863521411	3.39477157790131	3.28414482809129	-0.413132821808527	0.431469733468793	0.721710551668303
Merged-chr17-88284649-4	chr17	88284537	88284737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-156067.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	5.32141666371324	5.6601113719277	5.14458407713343	5.68094408334123	6.02158601311427	5.56537837701648	5.84959829384586	5.91767956329014	0.606584078647509	0.0380034814681727	0.195127303428051
Merged-chr4-59455677-4	chr4	59455571	59455771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17038.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	7.06809811604199	7.08379139601286	7.66864176991161	7.52740197292035	6.52445341687891	6.74641622449585	6.60156829049009	6.64734881260116	-1.02949219202422	4.59079088452523e-06	0.000137586486050367
Merged-chr14-73325434-4	chr14	73325343	73325543	+	913.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 1 of 26)	CpG	379.0	NM_009029	19645.0	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb|pp105	RB transcriptional corepressor 1	protein-coding	4.22656357019801	3.81009410587346	3.97021566174681	3.52950751201767	3.88990755726328	4.04490821147906	3.85531892746031	3.86925345360984	0.0599392851053569	0.899655694383738	0.962695701472385
Merged-chr13-114078189-4	chr13	114078092	114078292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 4 of 4)	intron (NM_172595, intron 4 of 4)	73400.0	NR_045836	319803.0	Mm.386896	NM_177004	ENSMUSG00000114213	A430090L17Rik	-	RIKEN cDNA A430090L17 gene	ncRNA	6.11480735093551	6.72506183241019	6.66414462915631	6.59977365240543	6.69542192113362	6.77923774140444	6.53833570962921	6.41488647430897	0.0912000340764443	0.69772903807449	0.87800480308191
Merged-chr9-35187682-4	chr9	35187568	35187768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177847, exon 7 of 7)	3' UTR (NM_001177847, exon 7 of 7)	-11681.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	5.81425896738864	6.3304100959656	6.09538548082767	5.64171212857579	6.64435978318778	6.27165489415737	6.32636953645367	5.98176006552425	0.533863974314073	0.0580817755586855	0.253104120392535
Merged-chr9-120602942-4	chr9	120602862	120603062	+	942.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25631.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	4.99392338507437	4.79648431035247	4.86284301308495	4.6817075683804	4.90893434318729	4.53967095563512	4.57185490732925	4.82434732125699	-0.199239974646769	0.567323735712898	0.808229609203301
Merged-chr14-27388566-4	chr14	27388462	27388662	+	951.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 7 of 10)	intron (NM_027871, intron 7 of 10)	27173.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	4.7169589232039	4.5557999188479	5.45000773352485	5.44235041225699	5.06881749148767	4.81049421954847	5.1560316388501	4.87585853973412	-0.244261159998467	0.531224685971622	0.787095803840917
Merged-chr8-66405956-4	chr8	66405875	66406075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 5 of 7)	intron (NM_175188, intron 5 of 7)	19674.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	6.45525776200586	6.44186900634521	6.62549231091677	5.88923525013481	6.44003991538527	6.43710213970447	6.08718327758456	6.17702720099337	-0.09986858018832	0.707638178081084	0.882529695648857
Merged-chr10-79877336-4	chr10	79877222	79877422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-2345.0	NM_011178	19152.0	Mm.2364	NM_011178	ENSMUSG00000057729	Prtn3	PR3|mPR3	proteinase 3	protein-coding	5.44675722326629	5.27294356838211	5.60596682690773	5.39744694632226	5.45348811838351	5.5642637677038	5.36336437180884	5.44389503999144	0.0471959104627597	0.864198470993062	0.949007728822475
Merged-chr8-41417114-4	chr8	41417000	41417200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013522)	promoter-TSS (NM_013522)	18.0	NM_013522	14300.0	Mm.217312	NM_013522	ENSMUSG00000031590	Frg1	-	FSHD region gene 1	protein-coding	7.27793062500348	7.20951495088449	6.89680296221518	6.97713390371726	7.08609329997126	7.30275644973798	7.20109363940236	7.18892579347588	0.134156428658748	0.490170624198219	0.762136675327225
Merged-chr2-118728528-4	chr2	118728426	118728626	+	940.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290790)	promoter-TSS (NM_001290790)	-88.0	NM_001290790	18796.0	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	4.89573251725494	5.09164939986804	4.9317300894468	4.89990681032339	4.63618210440695	4.8806922573065	4.90798194391224	4.96260302657935	-0.225709723000154	0.488767387395456	0.761435190794948
Merged-chr10-44669084-3	chr10	44668963	44669163	+	806.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-210315.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	3.41624842547377	3.03145259482076	3.59515454426081	2.616719823098	2.76140288865035	2.85610366095459	3.1386116768793	2.96104220097652	-1.12507776797265	0.109713269331649	0.365740014881858
Merged-chr10-52382540-4	chr10	52382424	52382624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199272)	promoter-TSS (NM_001199272)	-400.0	NM_001199272	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	6.50629047290456	6.85148528709175	6.57365112070286	6.61188674976433	6.49179454141369	6.61459959331912	6.80001231888738	6.51966519094674	-0.0522209950455199	0.808037824041666	0.92593795364266
Merged-chr18-20749594-3	chr18	20749508	20749708	+	882.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3204.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	3.58199041147858	3.13769599241044	3.77248089350454	3.46963650308138	3.46210453125884	3.41049530771254	3.51590869580312	3.52818982699528	-0.0840198050853957	0.873871338558642	0.952744110383191
Merged-chr11-88950414-4	chr11	88950310	88950510	+	919.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029023, intron 2 of 12)	intron (NM_029023, intron 2 of 12)	5032.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	4.57407066910244	4.79554363083683	4.45110512573485	4.4360862926853	4.64713475553053	4.49092409748831	4.14484865212702	4.64796872229446	-0.142097841550294	0.712070770528118	0.884715833326134
Merged-chr5-123027738-4	chr5	123027660	123027860	+	926.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	12686.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	4.98499264278999	4.36789020559129	4.75580372120064	5.07433319646099	4.37267376333232	4.24467202389828	4.58124544018253	4.75260607713112	-0.716467385685436	0.0718494377590873	0.287919452641609
Merged-chr11-77983709-4	chr11	77983616	77983816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174852, intron 1 of 14)	intron (NM_174852, intron 1 of 14)	900.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	5.47299443351567	5.48421194840438	5.10695439491267	4.97736225828647	5.49250663109996	5.13711679855465	5.5715579226658	5.32995642198963	0.238771985068297	0.447839452230285	0.73332468018769
Merged-chr4-149665567-3	chr4	149665462	149665662	+	967.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 2 of 23)	intron (NM_001029837, intron 2 of 23)	-2246.0	NM_001164052	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	4.13153959191004	3.6609997060183	4.35831296209496	3.81335891888188	4.06432952227812	3.62435316518566	3.55850638100075	3.80169189400852	-0.632288005415861	0.217904712140156	0.524812112221229
Merged-chr7-34272676-3	chr7	34272570	34272770	+	976.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172741, intron 1 of 12)	intron (NM_172741, intron 1 of 12)	12939.0	NM_172741	233103.0	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	3.94865937707497	3.66078093152278	3.81003141287103	4.17851427886488	3.39583331077547	3.71482608250838	3.6394777690363	3.53627332161543	-1.09597559019316	0.0278921938092484	0.159695822325329
Merged-chr12-118758209-4	chr12	118758079	118758279	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88150.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	5.44988889758046	5.41951475015852	5.5344791477866	5.80253111808592	5.64118281568819	5.40939148873541	5.77120699605535	5.08344164344734	-0.113329902594541	0.71120713222413	0.884368339061902
Merged-chr11-5273037-4	chr11	5272951	5273151	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	-11441.0	NM_032396	84035.0	Mm.209989	NM_032396	ENSMUSG00000020393	Kremen1	AV002070|Kremen|Krm1	kringle containing transmembrane protein 1	protein-coding	3.93234589228918	4.73780667351404	4.42263832857461	4.43092227193354	4.21452486456885	4.17168813297062	4.22953126553838	4.53641254232552	-0.286694005078273	0.502245153554855	0.769575778516236
Merged-chr10-59221856-4	chr10	59221656	59221856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172939)	promoter-TSS (NM_172939)	91.0	NM_001024911	103080.0	Mm.346842	NM_001024910	ENSMUSG00000019917	Sept10	4921515A04Rik|9430099J10Rik|AA408298|AI874685	septin 10	protein-coding	7.64474457083677	7.88231061623202	7.71317250434628	7.58314125551529	7.77637905973523	7.87407392421432	7.79956196730593	7.7793436585548	0.13073433221998	0.437061440414161	0.725451385050576
Merged-chr18-36561279-4	chr18	36561191	36561391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175375, intron 1 of 33)	CpG-6857	688.0	NM_175375	108857.0	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	5.55986519849688	5.77523091051045	5.71898292885184	5.39813411279199	5.82301400670301	5.76444109133558	5.61389764955411	5.9613627928827	0.316883601120879	0.236921286399793	0.54700150657517
Merged-chr18-65505135-4	chr18	65505016	65505216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	74119.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	6.0938418214139	6.24692320207046	5.92921747490743	6.00061846814704	5.32770915334048	5.86307699390361	5.75939877787853	5.75975734035263	-0.637116571715704	0.0173798702253341	0.116410267539209
Merged-chr14-65100613-4	chr14	65100521	65100721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2515.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	5.91292836834781	5.55321270618308	5.68776031529802	5.92015762824226	5.55131284478555	5.52666476898626	5.52936354484863	5.34499907339318	-0.493585043453066	0.0693292451118671	0.281553394067301
Merged-chr11-98782769-4	chr11	98782643	98782843	+	744.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7366.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	3.53305990034682	3.19861658193063	3.76877589939394	3.25848802346185	3.25757633897186	3.42274958953074	3.41224277957584	3.47878966267705	-0.199501075887897	0.713730903449043	0.885468561919243
Merged-chr4-7457642-4	chr4	7457561	7457761	+	967.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103027.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	5.26246141776673	4.87317627728768	5.26337102844685	5.55990354410465	4.61248864983837	4.93939615548488	5.50322107089899	5.37382214061758	-0.223994855694687	0.550478254369573	0.798632172919405
Merged-chr2-167778412-2	chr2	167778312	167778512	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87235.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	3.70450942583541	3.42452800201582	3.43533318861807	3.74572695231884	3.71593060007757	3.5493443888932	3.42324308929801	3.70285829641132	0.0390885670140043	0.93779147844879	0.977460307804652
Merged-chr13-73467184-4	chr13	73467076	73467276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145376)	promoter-TSS (NM_145376)	-207.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	7.00114259177579	7.18382526126462	7.28799113165347	6.92896624882595	7.09538790522228	7.17949292348223	7.34946036767922	7.07210686941176	0.105628240339112	0.591208455475449	0.821525680896513
Merged-chr18-56875424-3	chr18	56875331	56875531	+	956.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177115, intron 1 of 4)	MTD|LTR|ERVL-MaLR	50117.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	3.83450061580238	3.55002150063543	3.87976020510007	4.02086685112032	3.43781047403754	3.3875267952524	3.51474528067625	3.46708239580903	-1.25485377306655	0.0132057966112733	0.0960236384711228
Merged-chr15-74641761-3	chr15	74641665	74641865	+	800.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5447.0	NM_001177437	69439.0	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	3.42499605281199	3.51376740682777	3.87794979952582	3.34020397065792	2.97526669246517	3.16331631666251	3.23934388845301	3.18599669834873	-1.54402393468932	0.00828755675245431	0.06883176032948
Merged-chr19-11102119-4	chr19	11102034	11102234	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027058, intron 5 of 6)	intron (NM_027058, intron 5 of 6)	-21031.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	5.65099269667368	5.2509561825305	5.32130267517762	5.50148093537492	4.96078739184231	5.27553913436978	4.67566055267109	5.2271720157646	-0.723592297598293	0.0247411381661095	0.147454531819937
Merged-chr2-167493090-4	chr2	167492942	167493142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170756)	promoter-TSS (NM_170756)	-168.0	NM_001356523	263876.0	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	7.33178230826642	7.6274725301471	7.07979510932845	7.03977597592891	7.64308670824837	7.72937088090665	7.46172317903001	7.437610466891	0.38404318992281	0.0661499521060409	0.273986422492747
Merged-chr2-28619089-3	chr2	28618986	28619186	+	954.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160406, intron 1 of 6)	intron (NM_001160406, intron 1 of 6)	2896.0	NM_008114	14582.0	Mm.373385	NM_008114	ENSMUSG00000026815	Gfi1b	Gfi-1B	growth factor independent 1B	protein-coding	3.8207081155233	4.34782943017714	3.91953028885671	3.81943837638813	3.73723083341944	3.71750216891975	3.70035492751899	3.53568546072837	-0.927435975219506	0.0556606956249142	0.246922270048317
Merged-chr4-43419230-6	chr4	43419131	43419331	+	804.486084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 2 of 11)	intron (NM_001037709, intron 2 of 11)	9903.0	NM_177377	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	4.40182972197539	4.00311089835664	4.93131495545222	4.50222005882236	4.19456813075771	4.39326489283988	4.58258414193109	4.52461400870006	-0.159653138550474	0.708668790956741	0.882983104345985
Merged-chr1-34840479-3	chr1	34840390	34840590	+	796.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 1 of 6)	intron (NM_001160236, intron 1 of 6)	2560.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	3.35133189454721	3.2310019409332	3.03721083648672	3.32505325207874	3.3478631196072	3.72300522757586	3.28221601415135	3.23312002175974	0.5691584131859	0.302630172702227	0.615120736250945
Merged-chr19-4201703-4	chr19	4201596	4201796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011237)	promoter-TSS (NM_011237)	-93.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	5.86251060412673	5.92411334291766	5.86354188521534	5.66813293473947	5.97685899663971	5.84192894283627	5.85624008877459	5.57894987130806	0.0113833322617368	0.964762871313322	0.987505292820766
Merged-chr4-150593994-4	chr4	150593917	150594117	+	987.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	58157.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	5.45669836584971	5.3501208919768	5.07420993289725	5.7225810685452	5.59680359730623	5.35820092729571	5.43030892660518	5.24450153071073	-0.0373347460232819	0.904015583740432	0.964504612681709
Merged-chr5-146758119-4	chr5	146758021	146758221	+	932.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 3 of 8)	intron (NM_011669, intron 3 of 8)	36835.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	4.44733848147672	4.34303210124794	4.49219985991053	4.93661691794714	4.46569235058023	4.21718687385249	4.93463585700309	4.92566482480552	0.166654530473025	0.69289562584518	0.875178636291779
Merged-chr1-65177670-4	chr1	65177586	65177786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111320, intron 1 of 8)	intron (NM_001111320, intron 1 of 8)	1456.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	6.27583073057288	6.37669468914391	6.78834896313666	6.51403333307107	6.64307191726096	6.45410404612062	6.46065516997515	6.31126734808465	-0.0330032432854024	0.885988567861828	0.957204455938164
Merged-chr12-25100864-1	chr12	25100764	25100964	+	1000.0	f0_c57.idr	Intergenic	CpG	-4772.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	5.4279867866732	5.47033231813076	5.56837010315729	5.52730637588602	5.30203136992624	5.79324911562624	5.48674721383067	5.66577562038595	0.105530118219918	0.705551618121028	0.881759346486013
Merged-chr4-89146478-3	chr4	89146372	89146572	+	797.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024433, intron 1 of 7)	intron (NM_024433, intron 1 of 7)	9102.0	NM_024433	66902.0	Mm.28500	NM_024433	ENSMUSG00000062937	Mtap	1300019I21Rik|MSAP	methylthioadenosine phosphorylase	protein-coding	3.79624376900941	3.76412460133228	3.64682409114496	3.64752201048907	3.4119951846695	3.709777243592	3.73280153976715	3.47535541272218	-0.406492514418919	0.400327404636704	0.698147846003575
Merged-chr5-17815479-3	chr5	17815370	17815570	+	872.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159557, intron 5 of 15)	intron (NM_001159557, intron 5 of 15)	20426.0	NM_001159555	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	3.46763896412249	3.39686139376294	3.68579984185187	3.33082306104043	3.44600808882927	3.85629193478703	3.26718262432783	3.99241454409411	0.628349408109324	0.242805194171666	0.553699769837729
Merged-chr1-152524533-2	chr1	152524433	152524633	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 16 of 17)	intron (NM_016846, intron 16 of 17)	100684.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	2.41787408421128	2.21600527547841	2.41811622184313	2.31890207071584	2.51474731086532	2.67115205261836	2.67993076653867	3.10628132681967	2.19755854911173	0.00286333784552569	0.0308335135411003
Merged-chr15-66813085-4	chr15	66812971	66813171	+	959.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	18758.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	4.66627015740232	4.28269324846764	4.19041522409329	4.32261784282859	4.73197254499527	4.15051877871375	4.81190897627077	4.73415304771154	0.589778200712662	0.13875526788497	0.414381792154761
Merged-chr3-82795753-3	chr3	82795617	82795817	+	765.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3e|LINE|L1	80766.0	NM_001277170	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	2.49551366025724	2.35092289399476	2.43568631656933	2.34881314982072	2.14042001978145	2.18324917964582	2.3642431530621	2.23528278777731	-1.12031948969018	0.144933922096176	0.424118222368184
Merged-chr11-23305839-4	chr11	23305705	23305905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1090.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	5.07133152714136	5.53789030794135	5.39932526054303	5.47592044737036	5.73496901067617	5.2138912810811	5.40074273944243	5.36639823287387	0.115751264807821	0.703334358093984	0.880690314212345
Merged-chr13-35947544-4	chr13	35947523	35947723	+	751.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20283.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	3.23969774848861	3.11780271926026	3.18534779437289	2.9908460921157	2.89458464617784	3.04827039987441	3.11630700664425	3.18358824647874	-0.278852290392659	0.62820238608362	0.841427212108636
Merged-chr16-30466110-4	chr16	30465988	30466188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-77558.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	5.0296877272825	5.07063323415777	5.4075450559735	5.27866932096084	5.86995853193749	5.66907577991685	5.52006946819989	6.02444559212959	0.991951835795414	0.000620120599958359	0.00917311970615729
Merged-chr5-35582940-4	chr5	35582855	35583055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357020)	promoter-TSS (NM_001357020)	-79.0	NM_001357020	80911.0	Mm.291503	NM_030721	ENSMUSG00000029098	Acox3	BI685180|EST-s59|PCOX	acyl-Coenzyme A oxidase 3, pristanoyl	protein-coding	6.92745309043379	6.81051247609829	6.63669559593166	6.84400521597528	7.06189087422968	7.03850092871038	7.20231985234064	6.89744983658049	0.339074947946539	0.0838330419552933	0.314833315039114
Merged-chr2-142764749-4	chr2	142764620	142764820	+	901.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 12 of 26)	intron (NM_001355123, intron 12 of 26)	136744.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	4.93524395053222	4.54836951109549	4.9360837406081	5.38174752030344	4.30646795641342	4.32328805126813	4.97613695026088	4.82872686636453	-0.732777943181554	0.077328439350295	0.300748815442531
Merged-chr4-126110196-2	chr4	126110134	126110334	+	973.25	f0_balb.idr|f0_c57.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	6277.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	4.51006408242004	4.89949457729274	4.26309628535369	4.23988669622668	4.84777624773056	5.07067478880534	5.16900894668933	4.67719772091656	0.945748952098805	0.0137170741669806	0.0985732076861701
Merged-chr8-106151917-4	chr8	106151718	106151918	+	978.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 1 of 5)	intron (NM_001357319, intron 1 of 5)	1464.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	4.11811975574312	4.42626078642396	4.99125411860678	4.70507033910135	4.76413437825856	4.59633182036123	4.15697259879671	4.62505301537779	-0.0929166510991316	0.827787904018682	0.933903677361406
Merged-chr4-102570487-4	chr4	102570368	102570568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001177980, exon 1 of 10)	5' UTR (NM_001177980, exon 1 of 10)	408.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	7.86500334718537	8.18647485097754	8.25418624592426	7.78947686002313	8.06313576129646	8.16655506416039	8.13513561758218	7.83033313189711	0.0280082610167028	0.881416040395263	0.955384724180766
Merged-chr1-106099349-4	chr1	106099252	106099452	+	983.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72172.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	5.39475347503978	5.17139600288044	6.12473441440843	6.16326894461338	5.06571870524752	4.98876602152794	5.27618455365194	5.47854505719499	-1.00434286409088	0.00545292382182417	0.0506305328350668
Merged-chr18-53877634-4	chr18	53877526	53877726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 1 of 12)	intron (NM_152809, intron 1 of 12)	15513.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	6.50863176880837	6.63737919490327	7.13728131765558	6.72624681456619	6.11330279999973	6.2577994310433	6.39077061077592	6.43678900956185	-0.689494394754625	0.00399787454133385	0.0400569695914417
Merged-chr5-122285209-1	chr5	122285109	122285309	+	593.0	f0_c57.idr	intron (NM_177242, intron 1 of 5)	CpG	811.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	3.17004952551599	3.0084969014386	3.17044753402555	2.92684762932262	3.19760613871841	3.21980019336956	3.53093952235348	3.634793592095	1.28514267018127	0.0210126428753954	0.132406582852884
Merged-chr3-58516884-4	chr3	58516787	58516987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8934.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	6.29743575318751	6.35597908551812	6.20462460807741	6.60385021684753	6.22939132702317	5.89294131731445	6.17294063011058	5.96650403378224	-0.471610909493412	0.0527549369427259	0.239510374833926
Merged-chr16-78576111-4	chr16	78575999	78576199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252440, intron 1 of 4)	intron (NM_001252440, intron 1 of 4)	589.0	NM_001252438	67102.0	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	5.42091942329053	5.63490106316323	5.53742700891102	5.1266016259635	5.72471998382735	5.86681756538593	5.48181217648018	5.87051217612253	0.538942483877254	0.0609300652588977	0.260925117909518
Merged-chr10-67049013-4	chr10	67048917	67049117	+	945.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	43942.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	5.13746937157932	5.07562530798	4.84894269694301	5.01913515912341	5.3007174088281	5.54349041268301	5.20704452605478	5.25926524348247	0.572447378880879	0.0557042802490124	0.247023547682042
Merged-chr7-16816812-4	chr7	16816734	16816934	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173430)	promoter-TSS (NM_173430)	-102.0	NM_173430	243853.0	Mm.39703	NM_173430	ENSMUSG00000048920	Fkrp	A830029B19Rik|AI842067|AI847300|LGMD1I|MDC1C	fukutin related protein	protein-coding	4.49724485275658	4.4126699114858	4.53780976348164	4.34648574897481	4.46042471449893	4.49919917965075	4.4365867025557	4.49506977281406	0.0728441392776079	0.839977656874911	0.939166584762349
Merged-chr3-15576651-4	chr3	15576540	15576740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1575.0	NM_001173460	668101.0	Mm.423523	NM_001173460	ENSMUSG00000095028	Sirpb1b	-	signal-regulatory protein beta 1B	protein-coding	6.11502755833914	5.74426817346535	6.30716753874117	5.60603883315288	6.57024602009453	5.96816547264581	6.43960707653388	6.35466339157728	0.618775961618993	0.0269109858861226	0.155947005160655
Merged-chr8-23256016-5	chr8	23255916	23256116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020585, intron 1 of 4)	intron (NM_020585, intron 1 of 4)	1064.0	NM_020585	57437.0	Mm.196269	NM_020585	ENSMUSG00000015341	Golga7	AB041568|C130038N16Rik|GCP16|GOLGA3AP1|HSPC041|R75586	golgi autoantigen, golgin subfamily a, 7	protein-coding	4.73187719731011	4.93401637823459	4.61351122551571	4.58083292788088	4.77184968534675	4.65967024041811	4.67227556828025	4.9059989786014	0.0888027708150959	0.796180242598782	0.921052599307061
Merged-chr4-6357253-4	chr4	6357159	6357359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-8421.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	6.9846459381757	7.03585599583435	7.141252625575	7.09689425982197	7.08488966732493	6.81439103208194	7.19190761342387	6.92899773947285	-0.0680813032606835	0.725013762825084	0.890583554069766
Merged-chr10-68465061-4	chr10	68464950	68465150	+	951.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028491, intron 5 of 7)	intron (NM_028491, intron 5 of 7)	76825.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	4.70507967353072	5.10124516433813	5.29589021178125	5.36545681597969	5.30581526353327	4.96900082653216	4.92270485095119	4.86774498490842	-0.216717875516766	0.531978558137879	0.787769192787069
Merged-chr8-82376362-3	chr8	82376274	82376474	+	906.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008357, intron 2 of 7)	MLT2B3|LTR|ERVL	26212.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	3.8055314449504	3.5663128318833	3.60150424398096	3.58073443601045	4.08298010602017	3.71903151757113	3.641061710361	3.28941088642769	0.262013189202228	0.61651221470979	0.835050197538166
Merged-chr16-30604266-4	chr16	30604152	30604352	+	931.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4529.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	4.48008441353628	4.32710228069039	4.59691509644716	4.32016126661661	4.46532082975612	4.28668766237229	4.49968010635993	4.47791614000505	0.0299579899735671	0.935710449529369	0.976639892179174
Merged-chr2-174436457-4	chr2	174436278	174436478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022325, intron 2 of 5)	intron (NM_022325, intron 2 of 5)	2661.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	6.29900246024931	6.43959728191957	6.28208899257232	6.16187522842556	5.97386571934341	6.17498627754128	5.74584143062149	6.27758718206264	-0.367666700416789	0.134332890126377	0.407938938790282
Merged-chr7-142361003-1	chr7	142360903	142361103	+	551.0	f1_c57bl6.idr	intron (NM_001347541, intron 2 of 2)	MLT1A|LTR|ERVL-MaLR	11256.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	2.79641620615029	2.75656964565765	2.85592656527024	2.70183078213324	2.78381813844017	2.63059677288548	2.84509569941647	2.66828007928896	-0.176226411053173	0.78067831587386	0.914613598929882
Merged-chr10-34207290-4	chr10	34207143	34207343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172508, exon 1 of 6)	5' UTR (NM_172508, exon 1 of 6)	308.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	6.21398136328532	6.64607459074184	6.33208891365823	6.15120854702454	6.34262409675984	6.81871198950968	6.60993541123868	6.2106342489118	0.244720354907649	0.332216840457385	0.643242002255486
Merged-chr5-123661767-4	chr5	123661671	123661871	+	906.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 1 of 18)	PB1D7|SINE|Alu	22590.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	4.70268976103156	4.82703928974362	4.70347913811955	4.25987615741751	4.34222550506096	4.56049247845623	4.1207004355898	4.38236604465788	-0.618418381953446	0.12505113812816	0.392530206421956
Merged-chr15-84167758-4	chr15	84167659	84167859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105816)	promoter-TSS (NR_105816)	-57.0	NM_054088	116939.0	Mm.390817	NM_054088	ENSMUSG00000041653	Pnpla3	Adpn	patatin-like phospholipase domain containing 3	protein-coding	6.76385888736113	7.10498935354052	6.91898663622622	6.84359867388663	6.98449894940555	7.25563097154111	7.14355575830991	6.4965535567664	0.119480131445496	0.603267126633713	0.828026186791373
Merged-chr12-55490445-5	chr12	55490381	55490581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010907, exon 5 of 6)	exon (NM_010907, exon 5 of 6)	2166.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	5.589005673833	5.76215545956415	5.69211334157243	4.95509411489784	5.9262553335949	6.02589397676936	5.33067723033531	5.35361082643772	0.295953202478645	0.391213977550644	0.691040061984853
Merged-chr11-21729257-3	chr11	21729156	21729356	+	976.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145425, intron 12 of 17)	intron (NM_145425, intron 12 of 17)	156975.0	NM_145425	216560.0	Mm.138090	NM_145425	ENSMUSG00000020319	Wdpcp	AV249152	WD repeat containing planar cell polarity effector	protein-coding	3.87890436827944	4.15161353920091	4.52405369221585	4.64544315001719	3.55121339865325	3.75800688622207	3.91779061663208	4.17458999527328	-1.25995206363857	0.0111415976404478	0.085191511273975
Merged-chr1-157445062-3	chr1	157444973	157445173	+	985.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13495.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	4.09492358791014	3.65744271983792	4.14008109829718	4.13751809517288	3.85511151536617	4.02220836776716	4.03182853935764	4.22194716816799	0.0216317708301151	0.961350176243879	0.986178162982447
Merged-chr3-144401413-3	chr3	144401294	144401494	+	815.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	168822.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	3.33638717100116	3.16864891147873	3.28028352727081	3.47433743651754	3.14581422823864	3.26971553740461	3.20983064375388	3.49068824784512	-0.16811632926599	0.757916093647932	0.904923493937229
Merged-chr17-24344858-3	chr17	24344708	24344908	+	910.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001031621, intron 2 of 29)	intron (NM_001031621, intron 2 of 29)	2444.0	NM_001031621	381072.0	Mm.328842	NM_001031621	ENSMUSG00000035435	Abca17	-	ATP-binding cassette, sub-family A (ABC1), member 17	protein-coding	3.74016443484595	3.82194286163086	3.97868108893489	3.44303614714255	4.49078695390099	4.7520531938635	4.59275024662213	4.39454635097143	2.13240320590799	5.09538949341334e-07	1.88701731920743e-05
Merged-chr15-79834339-4	chr15	79834204	79834404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028763)	promoter-TSS (NM_028763)	29.0	NM_001013360	504193.0	Mm.38438	NM_029079	ENSMUSG00000089837	Npcd	Cbx6-Nptxr	neuronal pentraxin chromo domain	protein-coding	5.80089798236879	5.76855394078873	5.66340152329138	5.4697570553971	5.12896534687206	5.53790759321975	5.42386210044298	5.32634812452363	-0.555394808739092	0.0528499877295984	0.239788964597469
Merged-chr3-52844221-4	chr3	52844149	52844349	+	934.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83417.0	NR_040555	622124.0	Mm.389434	NR_040555	ENSMUSG00000104401	Gm20750	-	predicted gene, 20750	ncRNA	4.50940450129029	4.77212916274617	4.46661927286499	4.52551506925133	4.73415928761345	4.64097563363223	4.75699926436892	4.59023163436264	0.243094557318584	0.484962044244241	0.758945393823204
Merged-chr2-92059659-4	chr2	92059573	92059773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-35503.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	5.92999865488474	6.08664864793303	5.90942591398127	5.34584008796791	5.73731127094541	5.84618420663626	5.92176093952097	5.37120007233124	-0.160656602789353	0.599013450186673	0.826146116839364
Merged-chr18-76949027-4	chr18	76948919	76949119	+	896.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361227, intron 1 of 6)	intron (NM_001361227, intron 1 of 6)	4635.0	NM_001361227	76987.0	Mm.236127	NM_029826	ENSMUSG00000025421	Hdhd2	0610039H12Rik|3110052N05Rik	haloacid dehalogenase-like hydrolase domain containing 2	protein-coding	4.19563685790031	4.10393337975429	4.1026141438736	4.06603287357953	4.24107373132549	4.12546073673251	4.03624621285232	4.5453519724096	0.349461196698188	0.39072584769035	0.690674818832488
Merged-chr11-84117579-4	chr11	84117486	84117686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172562, intron 4 of 15)	ORR1D1|LTR|ERVL-MaLR	11982.0	NM_172562	217031.0	Mm.45159	NM_172562	ENSMUSG00000018651	Tada2a	AV319371|D030022J10Rik|Tada2l	transcriptional adaptor 2A	protein-coding	5.90939649268007	5.89280873157095	5.77029328438681	5.60940810419108	5.95935971334129	5.51421384517928	6.02527503490995	5.92811491408978	0.144377926039462	0.585929678297058	0.818478990587386
Merged-chr14-118854505-4	chr14	118854329	118854529	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021386)	promoter-TSS (NM_021386)	-521.0	NM_021386	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	4.1136461037266	3.86129707694591	4.02617862259572	3.97109624909452	3.70300743841488	3.71655538072953	4.32498001043326	3.59587879084482	-0.346787908004442	0.473247797034105	0.751076459932416
Merged-chr14-118910112-4	chr14	118910034	118910234	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360412, intron 8 of 22)	PB1D10|SINE|Alu	12657.0	NM_001360413	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	5.31649581122605	5.34952161992472	5.66164936221384	5.58530907830252	5.29100703514833	5.11151339812806	5.74259145617457	4.75187135772144	-0.376007865867256	0.271634822500655	0.583248718877048
Merged-chr3-39175996-2	chr3	39175896	39176096	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK10D3_I-int|LTR|ERVK	289056.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	2.9549355055417	3.07198837524111	2.88771525403948	2.52077910432192	3.38863823715505	3.19422958074618	3.1823069690654	3.07935747375262	1.46450868515277	0.0220373163885879	0.136696657361507
Merged-chr10-18431050-3	chr10	18430957	18431157	+	911.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173390, intron 1 of 6)	intron (NM_173390, intron 1 of 6)	23382.0	NM_173390	215819.0	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	3.31755366212355	3.28377141801307	3.64782250789103	3.18453049025885	3.141944521829	3.0563052266296	3.00680680055191	2.94549189601046	-1.26162735347725	0.0347981719778267	0.184691602655262
Merged-chr4-32187345-4	chr4	32187273	32187473	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	223266.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	4.70045954631936	4.69549266780329	5.04228276863342	5.14246265382698	4.74208963534394	4.71114357348739	4.59928334594351	4.34045913327389	-0.650092794226015	0.0759482856748777	0.297746467069617
Merged-chr1-173411195-2	chr1	173411073	173411273	+	611.25	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9431.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	3.69080656399081	3.75989042788302	3.49276459059291	3.21479354506823	3.36683776126166	3.43511641319053	3.24688836353637	3.25636239594335	-0.761296461617343	0.167049589287632	0.458516437171159
Merged-chr11-119917249-3	chr11	119917173	119917373	+	956.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085498, intron 6 of 7)	intron (NM_001085498, intron 6 of 7)	3463.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	4.08354909579753	3.70786605016161	3.85949990065923	4.26707087242523	3.43837540995739	3.50845782070745	3.68836185277404	3.90536389238693	-1.07608415750872	0.0327615160916537	0.177418312688904
Merged-chr2-79618736-3	chr2	79618643	79618843	+	734.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16682.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	3.36743426383285	3.19590522446817	3.25730347384453	3.25297602327627	3.15870094665238	3.18062795704084	3.30099150487265	3.41756447345428	-0.00748220703662877	0.988793343105401	0.995492522898152
Merged-chr3-51719615-4	chr3	51719512	51719712	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	58433.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	3.76875019788246	3.84270300203229	3.66007769248381	4.10366525134515	3.76538483607983	3.77722704655547	3.85366058437126	3.81840137875159	-0.202206766427197	0.662538974609442	0.860108002584863
Merged-chr4-141874963-4	chr4	141874864	141875064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025994)	promoter-TSS (NM_025994)	-44.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	7.29234662221332	7.25532596874779	7.07365114116721	6.96810543103015	7.59032178405147	7.42775547087875	7.77741625592101	7.40980897754274	0.559992362041152	0.00369620588604163	0.0376276085186724
Merged-chr2-148409368-4	chr2	148409295	148409495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1207.0	NM_009378	21824.0	Mm.24096	NM_009378	ENSMUSG00000074743	Thbd	AI385582|CD141|TM	thrombomodulin	protein-coding	6.17893362736832	6.31532157130873	6.45825784259781	6.51782902782341	6.1973254829987	6.15712795881009	6.60956467832472	6.5496245526496	0.0105835720931303	0.964644124390719	0.98746538769534
Merged-chr7-110710761-4	chr7	110710648	110710848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-57458.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	7.18671133690044	7.35331526814939	7.19948283122568	7.1378759902424	7.56499108522744	7.48641115619346	7.48443611340851	7.53398272223108	0.404739172274497	0.0199060872336147	0.127671236547257
Merged-chr6-99028067-3	chr6	99027959	99028159	+	879.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 4 of 17)	intron (NM_001197321, intron 4 of 17)	239.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	3.6630582189408	3.32322342827797	4.09732834674077	3.59109919537612	3.47377619777786	3.61588916316189	3.29886431726992	3.71208150697422	-0.506345404548807	0.350404018273597	0.658015186172868
Merged-chr13-113918215-4	chr13	113918114	113918314	+	941.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	123706.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	4.44578632663509	4.12821438399088	4.95825255748274	4.90729704367881	4.85475417879256	4.67353743703741	4.86769785119632	5.24285812112188	0.537094464805281	0.188957116687475	0.48779670955222
Merged-chr8-125950451-4	chr8	125950358	125950558	+	848.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40008.0	NM_145608	234878.0	Mm.216458	NM_145608	ENSMUSG00000031853	Map3k21	Mlk4|mKIAA1804	mitogen-activated protein kinase kinase kinase 21	protein-coding	4.11142004581555	4.45862231588591	4.1120097844745	4.21144410358072	4.47169397864159	4.13147755032692	4.32122406146169	4.33814621769998	0.231624156954356	0.559737217817541	0.803989779751616
Merged-chr6-5508064-4	chr6	5507930	5508130	+	890.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11752.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	4.763366247928	4.38332222225718	5.80205010839036	6.25293698243677	4.63402553630234	4.61901380634429	4.93861548479346	4.88386073460133	-1.34086891927368	0.0686806249118877	0.279973965820638
Merged-chr14-103857144-3	chr14	103857070	103857270	+	725.344421	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12694.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	3.3983956770877	3.12497554487068	3.39886932911464	3.69993049938544	3.25145324818308	3.27782865506089	3.27609095506765	3.03299190855409	-0.79680890991817	0.165974355346449	0.456928587863273
Merged-chr12-8494645-6	chr12	8494510	8494710	+	817.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5399.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	3.28737709369727	3.50332471126079	3.60814730310625	3.42423524992125	3.2733847396422	3.3375643711786	3.15087132544629	3.5080165043637	-0.484941135510457	0.361177004368259	0.66649948133175
Merged-chr2-84727369-4	chr2	84727275	84727475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133840)	promoter-TSS (NM_133840)	-107.0	NM_133840	98985.0	Mm.21583	NM_133840	ENSMUSG00000027079	Clp1	AI462438|Heab	CLP1, cleavage and polyadenylation factor I subunit	protein-coding	8.23971042057486	8.25710689734662	8.12477140579804	8.16939639029783	8.29793245153823	8.68618751279974	8.27583038504386	8.22389214147081	0.233060753207439	0.172645562395421	0.466172528668856
Merged-chr17-48192590-3	chr17	48192480	48192680	+	815.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25323.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	3.64391829961879	3.90672585778282	3.88763024038171	3.48289255380858	3.37211861738036	3.76332202693866	3.62964016177105	3.47127138644172	-0.546198829011018	0.282821380736013	0.595041976860567
Merged-chr10-75514455-4	chr10	75514355	75514555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347201, intron 1 of 5)	MTE2a|LTR|ERVL-MaLR	2926.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	5.67386681806728	5.82966287810413	6.16140464334527	6.2032935837425	6.43423756012873	6.39645291706434	6.38391081913732	6.56716787947452	0.672796337532393	0.00657786396285256	0.0580756361959666
Merged-chr4-99829214-4	chr4	99829144	99829344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145549)	promoter-TSS (NM_145549)	-126.0	NM_026348	67733.0	Mm.257094	NM_026348	ENSMUSG00000028549	Itgb3bp	4930471O16Rik|AU022583	integrin beta 3 binding protein (beta3-endonexin)	protein-coding	4.96748271080817	4.80863001338833	5.37993315602708	4.8623784590243	4.97050162975412	5.03477667069406	4.67686124273502	5.06514151397003	-0.132381439689115	0.699356304318034	0.878772573452614
Merged-chr2-29670931-3	chr2	29670796	29670996	+	751.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	51176.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	3.6025062885693	3.47466001169064	3.54665033694436	3.63559912628581	3.83677371029976	3.71993364857619	3.58904438182096	3.89471365738544	0.602069010877086	0.198961679933569	0.500673184364653
Merged-chr8-126483170-3	chr8	126483092	126483292	+	915.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8127.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	4.04266838335624	3.75271742922858	3.80348636742042	3.81338995976393	3.94826025726796	3.62609604748357	4.10860414746002	3.90256878715081	0.16346580659168	0.717620083706724	0.887104549117071
Merged-chr1-82787575-4	chr1	82787493	82787693	+	896.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19137.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	4.53749550186126	4.4094819150853	4.41876341619388	4.51671026145101	4.34143989256646	4.26566066106639	4.31332830611245	4.37357000960339	-0.352054263419922	0.340934956125998	0.650069367398214
Merged-chr13-37721612-3	chr13	37721503	37721703	+	721.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104435.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.16043605112368	3.53192032465546	3.03294755445085	3.42282802081574	2.90158210555403	3.20879915142047	3.26451407144124	3.21870588960765	-0.596355365320269	0.315549919851307	0.627406568482253
Merged-chr18-65001314-3	chr18	65001223	65001423	+	668.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 2 of 30)	intron (NM_001114386, intron 2 of 30)	-22204.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	3.35395359326238	3.42723176967436	3.51804160619354	3.40935399928011	3.14045363439909	3.52605249000403	3.28321512695644	3.51598383651656	-0.204241069790541	0.698013790437174	0.878133646574305
Merged-chr9-107744317-4	chr9	107744225	107744425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_148930, exon 21 of 25)	exon (NM_148930, exon 21 of 25)	26677.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	7.5754468340087	8.20990505055675	7.50472943384611	7.26366833158151	7.52973574218388	7.75418126407322	7.39144258900997	6.87744789748499	-0.345002918891235	0.197007703382633	0.498329252341674
Merged-chr1-46852428-3	chr1	46852336	46852536	+	834.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356416, intron 1 of 10)	intron (NM_001356416, intron 1 of 10)	1182.0	NM_001356416	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	3.83464031704931	3.68502767331427	3.56344062354552	3.63885009740595	4.19164065164164	3.74056251878266	3.55061887035878	3.97186587565172	0.625750719825182	0.194423262413551	0.494881039741602
Merged-chr1-156676373-4	chr1	156676272	156676472	+	940.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2033.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	4.72353196645783	4.7238941816898	4.40128996771253	4.23962971622865	5.38806927434122	4.98074391454355	5.22722168313027	5.25038934681627	1.42397990436695	3.37149710049428e-05	0.000801803515255872
Merged-chr10-117792796-4	chr10	117792683	117792883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134010)	promoter-TSS (NM_134010)	-78.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	8.2534041675545	8.54933833224985	8.09816075295448	8.036680264266	8.57283347588224	8.72989379872064	8.45562952579343	8.50871635252471	0.408650653230605	0.0223234305825015	0.137780542331166
Merged-chr3-126669011-1	chr3	126668911	126669111	+	735.0	f0_c57.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	72060.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	2.16800329950251	2.12491682642085	2.16816284685001	1.91969316676176	2.86525661017843	2.59424515757363	2.98437344840392	2.73612010609463	6.25587221438347	4.77122222861278e-10	3.24675742839798e-08
Merged-chr9-65359286-3	chr9	65359163	65359363	+	874.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016688, exon 5 of 5)	3' UTR (NM_016688, exon 5 of 5)	-1797.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	3.04675252949833	2.94810490736676	3.21811184360427	3.46471074293802	2.79787924134499	2.88382760143894	3.03634684251334	3.16188120694265	-0.904289969011474	0.151572640485897	0.435253719845424
Merged-chr15-59480823-3	chr15	59480733	59480933	+	816.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	106635.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	3.99075151384972	4.11202066671937	3.86022733952542	3.70508512747821	3.31135915393552	3.40704333494278	3.41421445281443	3.5468118592039	-1.6475977264299	0.00147749867246776	0.0184341591599619
Merged-chr11-22695219-6	chr11	22695020	22695220	+	869.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	164615.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	3.51141774575932	3.37566327906369	3.65832376080572	3.17915951548989	3.23780832576793	3.57566622473909	3.33392733958825	3.22192918929635	-0.304636060591541	0.577638828417049	0.814201742353153
Merged-chr2-33887692-4	chr2	33887584	33887784	+	825.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175184, exon 1 of 10)	5' UTR (NM_175184, exon 1 of 10)	262.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	4.27594493282829	4.27344763005604	4.50869685352774	4.01021488997635	3.78379111779154	4.11715184379703	4.25700662391693	4.09183983557641	-0.517727211520943	0.235586498825424	0.545557842336431
Merged-chr8-66860201-4	chr8	66860115	66860315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163564)	promoter-TSS (NM_001163564)	-2.0	NM_001163564	234344.0	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	7.44740802553019	7.54414156090436	7.42919112468136	7.80582281097583	7.4264257689424	7.38166413889184	7.71799119612714	7.37398024712235	-0.126136751663265	0.514299349120709	0.776966017760127
Merged-chr5-135689023-4	chr5	135688919	135689119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008898)	promoter-TSS (NM_008898)	-126.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	8.86903861929855	9.15587324591049	8.94311953235451	8.7265415582317	9.07416868384613	9.38222692159481	9.1205895123965	9.02021673900774	0.278842378643444	0.0948057995161403	0.336870108015143
Merged-chr17-57344170-4	chr17	57344065	57344265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14521.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	5.13054868578884	5.42459003015211	5.4155121286837	5.21414303122602	5.66202086165033	5.56072938081695	5.52147091416157	5.05539018210268	0.317492528076864	0.292743357825995	0.605151438059318
Merged-chr9-32040223-4	chr9	32040102	32040302	+	948.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-75934.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	4.55380948549707	4.2814098518761	4.46463912060655	5.2927573921748	4.81143342748542	4.33960576601243	5.08359419324505	4.82432941938008	0.123820043848375	0.78309972757456	0.915496954483708
Merged-chr12-102720959-3	chr12	102720839	102721039	+	950.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16070.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	4.06238977592451	4.09966957142588	3.97549522658524	3.83767529695348	3.90294327663572	3.46196365344599	3.65590346006836	3.7238851166588	-0.830142389830741	0.083163157930934	0.313348706705095
Merged-chr17-27938542-4	chr17	27938454	27938654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	29248.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	5.59286322958712	5.642625100034	5.7919744037466	5.64364064719365	5.52042893920414	5.50454000779122	5.69241531500437	5.81047021740079	-0.0553689904579869	0.833034380631565	0.936221000578989
Merged-chr5-139294318-4	chr5	139294212	139294412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 3 of 10)	intron (NM_172723, intron 3 of 10)	31152.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	5.3609546541607	6.16208069230615	5.19509101590913	4.86532760708127	6.01141272968178	5.73995891920372	5.56216529699842	5.26073293750235	0.308748479148923	0.426579865625808	0.718009561042068
Merged-chr10-54119469-4	chr10	54119348	54119548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43526.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	8.0555750388267	8.26450517649832	7.94755057732326	8.2693903417831	8.08419107373695	7.93262940753597	8.27691705157003	7.72436782499101	-0.159401607023733	0.395084053774666	0.694051201006319
Merged-chr17-56609846-4	chr17	56609771	56609971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153152)	promoter-TSS (NM_153152)	-100.0	NM_153152	224904.0	Mm.34002	NM_153152	ENSMUSG00000049760	2410015M20Rik	Mic13|QIL1|sr104	RIKEN cDNA 2410015M20 gene	protein-coding	7.29863761616235	7.36183631930027	7.34158879146724	7.26045183599195	7.38811891765491	7.36652285385565	7.62742375707125	7.33648522688401	0.162587386057054	0.360936158433804	0.666193206647645
Merged-chr10-13967475-4	chr10	13967390	13967590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	CpG-904	1111.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	6.63787751497988	6.72965648174701	6.82211007822444	6.62140357832307	6.61957704202532	6.38805096080313	6.52732493976775	6.30727027131526	-0.325994528183219	0.125610886537751	0.393540969799312
Merged-chr3-108444174-4	chr3	108444069	108444269	+	971.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011319, intron 1 of 11)	intron (NM_011319, intron 1 of 11)	1090.0	NM_011319	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	5.27108160767539	5.00122769683442	4.73730002267459	4.90772491179162	4.95077189434323	5.03129762941397	4.63063366634521	5.18391895409317	-0.0493460179786857	0.885177378655672	0.956936716928815
Merged-chr5-43868879-4	chr5	43868755	43868955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007646)	promoter-TSS (NM_007646)	46.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	7.05011459483735	7.34266048045058	7.61032418933197	6.96616862352099	7.73411602501455	8.02690411670769	7.94434191234505	7.40236872633371	0.711960096481535	0.00170034341971448	0.0205936267265368
Merged-chr14-56042353-4	chr14	56042279	56042479	+	890.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008571, intron 1 of 4)	intron (NM_008571, intron 1 of 4)	256.0	NM_008571	17225.0	Mm.4409	NM_008571	ENSMUSG00000022226	Mcpt2	MMCP-2|Mcp-2	mast cell protease 2	protein-coding	4.52975181770017	4.37401388937289	4.81936254573555	4.62881214560882	4.28621635784242	4.62019388628634	4.46876269773012	4.39980479420581	-0.353302932793311	0.344529425191527	0.652978484282344
Merged-chr12-35554434-3	chr12	35554352	35554552	+	989.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19463.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	4.54739875450052	4.24464464513049	4.54817235423957	4.22773582274248	4.07500373282107	3.88985427662215	4.08166446158228	3.76576930637672	-1.0986519662841	0.0116712460203712	0.0881055913123345
Merged-chr8-31168341-1	chr8	31168241	31168441	+	1000.0	f1_balb.idr	intron (NM_026453, intron 1 of 9)	intron (NM_026453, intron 1 of 9)	383.0	NM_026453	67920.0	Mm.289818	NM_026453	ENSMUSG00000031578	Mak16	2600016B03Rik|AI314911|Rbm13	MAK16 homolog	protein-coding	3.73514050342012	3.54804648869156	3.78547858642347	3.65809724129368	3.63203077136164	3.74728238164242	3.66908924614786	3.83108018812372	0.115611335699477	0.801969484097393	0.923638204160753
Merged-chr1-71974925-4	chr1	71974825	71975025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040454, intron 1 of 2)	intron (NR_040454, intron 1 of 2)	30270.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	6.72058383524842	6.89336786119841	7.15636588828115	7.45298605864217	6.63502978709173	6.64812532281688	6.9720143375377	6.68607689061949	-0.502523249556174	0.0353193337736859	0.18644965441048
Merged-chr9-96363794-4	chr9	96363677	96363877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357213)	promoter-TSS (NM_001357213)	-62.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	7.12011880595944	7.56361055168415	7.30350339978546	7.38328096049653	7.34706095470629	7.63941675346615	7.43487914695883	7.29841713031666	0.100798219678156	0.601114082580541	0.827071740947179
Merged-chr14-70927631-4	chr14	70927524	70927724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	37517.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	6.25072751541674	5.95547070816817	6.32642791214587	6.57374212367079	6.546058532057	6.07889846166693	6.31192102581327	6.30367669404861	0.0309380772309178	0.903535092660028	0.964287824952031
Merged-chr15-63595766-4	chr15	63595594	63595794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-116086.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	5.89852163641622	5.81336186533879	6.31960308951111	6.44062553698467	5.61520812085135	5.29456565876114	5.46252977803835	5.54325080828803	-1.11475374231308	0.000134608379749823	0.00260503951587979
Merged-chr6-29513468-4	chr6	29513361	29513561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5509.0	NM_001029985	333088.0	Mm.332961	NM_001029985	ENSMUSG00000059022	Kcp	AW060220|CRIM-2|Crim2|Gm793|KCP-1	kielin/chordin-like protein	protein-coding	6.74099602593991	6.1988826804452	6.47209232430618	6.52225761481614	6.2887136206161	6.2824900387382	6.74756049545611	6.45054496298849	-0.0620192389015218	0.797122954568049	0.921521740444505
Merged-chr14-61682366-4	chr14	61682299	61682499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028264)	promoter-TSS (NR_028264)	-26.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	8.25992818823722	8.52593311175354	8.37639575420324	7.64311088601024	8.39768924412253	8.72095503085474	8.33725722988574	7.90708838418262	0.171202027335964	0.475891132811476	0.752603574391689
Merged-chr2-32083769-4	chr2	32083665	32083865	+	966.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175511)	promoter-TSS (NM_175511)	-60.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	4.51655862336041	4.68303808490572	4.97085973509194	5.06606869596431	5.17109832935659	5.21119789453887	4.91182764284258	5.27452633981863	0.587502063423578	0.0871460563572947	0.321947845822177
Merged-chr4-46508389-3	chr4	46508294	46508494	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029077, intron 5 of 5)	intron (NM_029077, intron 5 of 5)	19065.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	4.10577895002373	3.72922485961723	3.59570614211538	4.24874296642362	4.12071181257966	3.71300283428529	3.80933448606753	3.92336099205215	-0.144480732923648	0.770366346588203	0.910151645456233
Merged-chr15-27665277-2	chr15	27665177	27665377	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	16265.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	2.84113506580567	2.73960501100147	2.89976064990935	2.60165555921534	2.50207303486262	2.75625380572728	2.57139614854822	2.95367505247421	-0.314928738019878	0.641559416929719	0.848794290196682
Merged-chr6-116756564-4	chr6	116756459	116756659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39801.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	5.86642014926465	6.03898797464491	6.07176986093936	5.73791821729183	5.41762093047748	5.28387377055713	5.6726381579838	5.67197478547184	-0.675665874030819	0.0136938799417648	0.0984761245074639
Merged-chr6-129350151-4	chr6	129350049	129350249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177686)	promoter-TSS (NM_177686)	-95.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	7.58703849099268	7.64192127894872	8.00490486806531	7.66132385585421	7.6920027093219	7.63566343785717	7.33012934204295	7.48203672532526	-0.243130396039522	0.201936698689818	0.504449104650498
Merged-chr6-87400085-3	chr6	87399976	87400176	+	656.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11141.0	NM_026860	68888.0	Mm.46387	NM_026860	ENSMUSG00000030048	Gkn3	1190003M12Rik	gastrokine 3	protein-coding	3.40216411060043	3.17491540916727	3.50223786325097	3.35162379074821	2.82426586522638	3.15850632729982	3.10310416790916	3.40064055163069	-0.874912619021731	0.143236552824797	0.421386013371202
Merged-chr4-132796363-4	chr4	132796281	132796481	+	973.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033308)	promoter-TSS (NM_001033308)	-17.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	4.72212920459437	5.28381632688452	4.72287841121116	4.74046490738396	5.27288693973735	4.81577078122225	5.32733331463496	5.26979464832194	0.57905499424703	0.0950266860806368	0.337284556125145
Merged-chr6-118455187-4	chr6	118455081	118455281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361901, intron 1 of 5)	CpG	325.0	NM_028335	72720.0	Mm.212572	NM_028335	ENSMUSG00000030145	Zfp248	2810037F07Rik|E130106N01Rik	zinc finger protein 248	protein-coding	6.14987392650282	6.3376521124436	5.94113353035972	6.26356057161679	5.75248897972764	5.94801391891995	6.04011120340467	5.71302156634728	-0.51167419279672	0.039957142737028	0.201666983115572
Merged-chr5-34238682-3	chr5	34238587	34238787	+	883.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 2 of 12)	L1M4|LINE|L1	49637.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	3.52147117007462	3.33733059496242	3.70559368086377	3.71180656632063	3.16816007402288	2.92811673114521	3.10906883058348	3.18304341154487	-1.82018666857873	0.00224330159888341	0.0255440672703443
Merged-chr7-19498498-3	chr7	19498407	19498607	+	802.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9824.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	4.03961072518836	4.13081241644006	4.04023232397508	3.96055200572895	3.58561479474394	3.66577638279926	3.77420250521851	4.28498289441653	-0.519635963362429	0.275713500580578	0.587627968315267
Merged-chr13-51881952-3	chr13	51881855	51882055	+	910.3777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35280.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	3.97034427018725	3.80350249759013	4.31844590235808	3.78438625829021	3.4061057776335	3.60973820141403	3.54098697479043	3.66927544799923	-1.30303682232731	0.00949116020309907	0.0760239877060134
Merged-chr10-40349836-4	chr10	40349736	40349936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291816, intron 1 of 11)	CpG	528.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	4.54026445895768	4.43068420140173	4.70875128352062	4.94338329626081	4.52430866017794	5.1599097168297	4.76226955718254	5.01765182008307	0.397927243074129	0.296533418626417	0.608507761092495
Merged-chr1-149960356-2	chr1	149960256	149960456	+	904.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	B1_Mus2|SINE|Alu	934.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	3.25224655682007	3.02749800278201	2.9745196714365	2.64794932562135	3.1067731783441	2.95299749407012	3.08072271530873	2.77278128605846	-0.000468164207197871	0.999421278572406	0.999731947458016
Merged-chr4-75394449-3	chr4	75394347	75394547	+	869.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-116155.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	3.59852821978162	3.46210674916963	3.7430373718304	3.58721576372157	3.38752214341396	3.4912809912768	3.42383916583499	3.3758951686408	-0.609956796901102	0.221647983067887	0.529761731915444
Merged-chr11-121388431-2	chr11	121388331	121388531	+	991.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139147)	promoter-TSS (NM_139147)	-180.0	NM_139147	217371.0	Mm.281639	NM_139147	ENSMUSG00000025170	Rab40b	SEC4L|rar	Rab40B, member RAS oncogene family	protein-coding	2.70028481889357	3.35736666560977	2.77456420839284	2.76087535557136	2.98414811588822	3.02149210610239	3.02443516106405	3.20076589802646	0.537097980737486	0.410844387379228	0.70626219990499
Merged-chr13-60601884-4	chr13	60601785	60601985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285917)	promoter-TSS (NM_001285917)	-62.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	7.01316066918489	6.7852488982088	6.86243278362388	6.86723648916081	6.92378126441979	6.49416147130425	6.86721884824726	6.8973008877273	-0.0949000896820769	0.645533164246613	0.850934142345746
Merged-chr1-173441376-3	chr1	173441271	173441471	+	695.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 2 of 8)	intron (NM_001013779, intron 2 of 8)	20767.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	3.50949957919221	3.45436437295477	3.51002710558045	3.16497208960951	3.15666021525203	3.34784156211312	3.09649983983057	3.29299975026841	-0.678033634011506	0.221021176244155	0.529067123644727
Merged-chr18-38484338-4	chr18	38484248	38484448	+	804.513916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	65441.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	2.81071628169515	2.78863518569909	2.81101595409864	2.84598123561894	2.8496074576538	3.05068423405365	3.10133472021084	3.21607474828167	1.0260544732824	0.0860857423356156	0.319723300480396
Merged-chr2-154943271-2	chr2	154943176	154943376	+	697.049988	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-50370.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	3.68606619221662	3.61891371310803	3.53609790359176	3.4802502035243	3.20458522546481	3.41682419709732	3.4681580150636	3.53410306958545	-0.589082598690253	0.249476774849784	0.560509685837972
Merged-chr10-57746460-4	chr10	57746363	57746563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38460.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	7.61157646162832	7.8656028236829	7.42915173279029	7.68087076536044	7.52317257407328	7.72879372727581	7.36241576343686	7.23201578929643	-0.244885906406497	0.213152959615596	0.518382346333146
Merged-chr7-129649132-3	chr7	129649032	129649232	+	909.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57269.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	3.85084269272046	3.87233328465997	3.85138871173486	3.89571991570753	3.89610949951259	3.80866717568404	3.78497576548623	3.99137214678644	0.0121240197772468	0.977697210160305	0.991939645680407
Merged-chr19-5844480-2	chr19	5844380	5844580	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003513, exon 1 of 1)	non-coding (NR_003513, exon 1 of 1)	998.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	5.44350307916334	5.62859195478576	5.41445587306649	5.1329822618752	5.44700086425844	5.95411408476364	5.47466924493095	6.04167897948128	0.5852854763793	0.0565298941736235	0.249021187985562
Merged-chr1-149891270-4	chr1	149891168	149891368	+	987.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 5 of 17)	intron (NM_008869, intron 5 of 17)	31171.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	5.0238061546116	5.09850077214625	5.45385652297276	5.62872583800173	5.16287469017885	5.304536046943	5.13751879162726	4.98435330800089	-0.353453811231865	0.276466573695203	0.588504895079849
Merged-chr10-89744271-4	chr10	89744161	89744361	+	676.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029166)	promoter-TSS (NM_029166)	-730.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	3.77038823668003	3.10090394353827	3.4488830856338	3.83478886703269	3.54406634549547	3.56490903814426	3.80044106168977	3.81517334622037	0.329969730238279	0.556256800538315	0.801851083590197
Merged-chr1-60158598-4	chr1	60158486	60158686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-22013.0	NM_173444	269198.0	Mm.205224	NM_173444	ENSMUSG00000073664	Nbeal1	2310076G13Rik|A530050O19Rik|A530083I02Rik|AI662228|ALS2CR17	neurobeachin like 1	protein-coding	5.40558064650654	5.51969546995301	5.4654202154858	5.46459506273637	5.77388345045911	5.28287744092216	5.74131286868623	5.72067259614821	0.320882979529715	0.243448116812698	0.554544083032867
Merged-chr18-9380866-4	chr18	9380745	9380945	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026484, intron 2 of 9)	intron (NM_026484, intron 2 of 9)	69309.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	5.17290157796668	5.1335698504657	4.80145207937136	5.03592663190132	4.2304451688247	5.05300247034845	5.17656483294873	4.87445626485941	-0.337678330744207	0.381236076256979	0.683526515664875
Merged-chr13-56334998-4	chr13	56334887	56335087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27913.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	7.51352134699738	7.10320846515387	7.42121787656101	7.18281918088735	6.10095260966345	6.71218177183205	6.89409468688736	6.5098816180607	-1.02711625999016	2.39261339413025e-05	0.000596510783820656
Merged-chr19-11818437-4	chr19	11818316	11818516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	987.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	5.55965647843351	5.77560032977367	5.16877232578587	5.40814117145329	5.20832420795156	5.54002491002932	5.33798679442937	5.63210729543466	-0.112125400958244	0.7108636869392	0.884240356833917
Merged-chr4-141670471-4	chr4	141670367	141670567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6352.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	6.87886373305698	6.91991539931977	6.54634013471112	6.87676916369411	7.0470279138557	6.95982146394083	6.58024315843268	7.01369372038527	0.137223043939826	0.524533102339029	0.78299900785164
Merged-chr18-80651539-2	chr18	80651461	80651661	+	627.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 7 of 9)	intron (NM_198429, intron 7 of 9)	56612.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	3.45774236115705	3.51439239634279	3.34360892718764	3.63843078584764	3.52894378703721	3.26030641468516	3.33193581025372	3.61070167706365	-0.192472131504557	0.711480876458123	0.884430620073572
Merged-chr3-65188026-4	chr3	65187916	65188116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289450)	promoter-TSS (NM_001289450)	-87.0	NM_001289450	16497.0	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	5.8936374043103	5.05563519754938	5.50281024393035	5.52458757394591	5.34255743769437	5.30686576983029	5.3917398005965	5.52569983162433	-0.226874531150207	0.46503232425775	0.745723070156486
Merged-chr1-39969225-4	chr1	39969130	39969330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 3 of 29)	intron (NM_001252202, intron 3 of 29)	68317.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	5.63634022769049	5.49420966125372	5.66386218307235	6.10582296529125	6.01686989298462	5.6127652832084	5.78283046740627	5.71129494154111	0.0491487381849663	0.865758595510267	0.949727926552738
Merged-chr14-63178047-4	chr14	63177958	63178158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360211)	promoter-TSS (NM_001360211)	-171.0	NM_001360211	14137.0	Mm.474432	NM_010191	ENSMUSG00000021273	Fdft1	SQS|SS	farnesyl diphosphate farnesyl transferase 1	protein-coding	8.77140879373682	9.01380125810204	8.71378291810823	8.74820558453604	8.61189474131188	8.96714213878152	8.76954079958669	8.73809506551249	-0.0533982020523965	0.739178336471035	0.897175752194117
Merged-chr6-31356675-4	chr6	31356550	31356750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42123.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	7.93915968311656	8.11417641722762	8.20582746079644	8.15541101297434	7.79773470333114	7.69531151342257	7.79228364011229	7.87754168214327	-0.409501356449185	0.0117410093004945	0.0885008261145713
Merged-chr5-43788564-4	chr5	43788479	43788679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6430.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	6.26384875057814	6.56076892015761	6.24613425763158	6.26310775596152	6.39470993059384	6.30316868300656	5.94144813540925	5.81804750618625	-0.293171756498823	0.250914703848089	0.562191344368554
Merged-chr17-53582024-3	chr17	53581925	53582125	+	921.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151733, intron 1 of 16)	intron (NR_151733, intron 1 of 16)	-2101.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	3.23369732931649	2.82273427260234	3.10430571611639	3.27234848564491	3.67621047346494	3.34816659949995	3.33912891877909	3.73681996326867	1.44825229967196	0.0155431199498347	0.107545907924317
Merged-chr3-127763274-4	chr3	127763183	127763383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	17244.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	5.45834526118937	5.44653098955163	5.17755724579224	5.5189372131916	6.20752031695746	6.25183871351579	6.33931451773443	6.18517498128964	1.32115953258149	1.9730116674941e-07	7.97031767767098e-06
Merged-chr2-75781275-4	chr2	75781138	75781338	+	860.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50939.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	4.17854295665919	4.44844690790236	4.02459155590118	4.24727687605752	4.12061681252034	4.6500674616084	4.2539820723512	4.47823186853122	0.348111732212294	0.395765274474179	0.694753655555222
Merged-chr10-21200959-4	chr10	21200845	21201045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14001.0	NR_152786	102636600.0	Mm.227606	NR_152786	ENSMUSG00000111005	Gm33619	-	predicted gene, 33619	ncRNA	5.59226915381821	6.27400177839314	5.97249647824029	5.2260514947553	5.75210167347938	5.94831139480237	5.50887924400949	5.44331928814693	-0.231119141657111	0.493267510905006	0.764097674835853
Merged-chr6-128630646-1	chr6	128630546	128630746	+	595.333313	f0_balb.idr	Intergenic	Intergenic	-7712.0	NM_010737	17057.0	Mm.16729	NM_010737	ENSMUSG00000030361	Klrb1a	Ly55a|NKR-P1.7|NKR-P1A|NKRP12|Nkrp1-a|Nkrp1a|ly-55A	killer cell lectin-like receptor subfamily B member 1A	protein-coding	3.60511623181672	3.37192830972118	3.60565426537412	3.32310979060864	3.20876690867465	3.31568352922279	3.54030707437379	3.60347830826852	-0.175954927693932	0.738950762721224	0.897069647209902
Merged-chr1-128357590-2	chr1	128357488	128357688	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008567, intron 1 of 16)	ID4_|SINE|ID	2117.0	NM_001313695	17219.0	Mm.4933	NM_008567	ENSMUSG00000026355	Mcm6	ASP-l1|D1Wsu22e|Mcmd6	minichromosome maintenance complex component 6	protein-coding	2.86555662124282	2.71240549031145	2.92348794596882	2.88557054300624	2.44098909120396	2.63672650452001	2.73326635106682	2.92182575104864	-0.768330253830862	0.260671992429616	0.57252299176491
Merged-chr9-119323749-4	chr9	119323556	119323756	+	892.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1229.0	NM_133985	108737.0	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	3.75057381906687	3.77645577642856	3.46463285039024	3.33373119284775	3.80567902958111	3.92293102968821	3.78527190713315	3.93958331752436	0.848134383135912	0.0761575770112657	0.298096281646671
Merged-chr5-115506624-4	chr5	115506538	115506738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133915)	promoter-TSS (NM_133915)	-38.0	NM_011223	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	6.82562281234973	7.170680895144	6.96670140186169	7.0019961924667	7.34192391975113	7.35045213287848	7.3716270458124	7.16870460471163	0.42372494232347	0.024257226337406	0.145520869234743
Merged-chr4_GL456216_random-34969-1	chr4_GL456216_random	34869	35069	+	946.0	f0_c57.idr	intron (NM_001033326, intron 6 of 6)	CpG-10796	19088.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	2.93799914881361	2.85501156063101	2.93830253495925	2.3527883953154	4.15402458138457	4.15423477175446	3.95609576625392	4.34500026263492	8.02818667869983	1.09503121905515e-16	2.29938722484751e-14
Merged-chr9-50522803-4	chr9	50522721	50522921	+	934.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011220, intron 4 of 5)	intron (NM_011220, intron 4 of 5)	5820.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	4.72376468156127	4.65545822980627	4.55784763395157	5.0636715116785	4.62582544345389	4.64519560598803	5.01011661608003	5.03156004257101	0.109057424637462	0.766595348782929	0.908660493187862
Merged-chr14-31593222-4	chr14	31593104	31593304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15821.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	5.51335326649102	5.40358476621078	5.42878270367644	5.62857463572709	5.34742876304548	5.44992116412288	5.54020773676177	5.92809395987712	0.126994594809909	0.660835088350803	0.859102512304971
Merged-chr12-116462001-4	chr12	116461917	116462117	+	839.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133762, exon 29 of 29)	3' UTR (NM_133762, exon 29 of 29)	-23703.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	3.89684132312101	4.14697225595072	4.41107853131913	4.25856783461607	4.2683976882008	3.69765595063553	4.22788391361753	4.58655902816909	0.103032598307937	0.824835960425643	0.932809005833124
Merged-chr5-112287325-7	chr5	112287248	112287448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	10657.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	5.02993340080919	4.64109002754087	4.89127997256055	4.92456823521623	5.19180313468099	4.9125787313569	4.67107810831367	5.42027987396656	0.399740134579095	0.253608356310231	0.564898241173811
Merged-chr7-16018513-6	chr7	16018351	16018551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-18956.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	5.31433089278809	5.58045249046397	5.65189534769819	5.40527284354017	5.30593212809946	4.86090056872321	4.95362875755702	5.18692709782323	-0.707101860980588	0.022701373812847	0.139226355904242
Merged-chr17-67223942-1	chr17	67223842	67224042	+	641.0	f0_c57.idr	intron (NM_001357625, intron 1 of 32)	L1MB5|LINE|L1	130517.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	1.8988692777142	1.85560714737652	1.81602528947433	1.72350306251404	2.09824436522863	2.29621418786115	2.17983186269489	2.31182949220876	3.3495555639361	0.000207692868759238	0.00375593767922099
Merged-chr11-120035031-4	chr11	120034946	120035146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	6735.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	6.07586306543051	5.82155079594985	5.74329282986769	5.63320348291825	5.49019171655748	5.6550724267321	5.22801525024488	5.50353088336515	-0.575625190000771	0.0402151532701494	0.202466713440088
Merged-chr19-60946163-4	chr19	60946075	60946275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	MLT1A|LTR|ERVL-MaLR	56426.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	7.67474646307144	7.237845710081	7.84875715094474	7.78740307586335	7.44621232044232	7.39136178581642	7.42908129137305	7.25419545276654	-0.366580518717706	0.0677991589537301	0.277838185299054
Merged-chr3-129970110-4	chr3	129969951	129970151	+	974.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001293644, exon 1 of 7)	exon (NM_001293644, exon 1 of 7)	155.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	4.40130744103163	4.3602757637032	4.35932124034433	4.38537751203689	4.15910266990225	4.4432644785599	4.25090235939029	4.59304603675766	-0.0305420949395882	0.936488662992062	0.976993705562408
Merged-chr6-34863084-4	chr6	34862996	34863196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197986)	promoter-TSS (NM_197986)	-50.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	6.58022750601851	6.69573042109506	6.2929091875485	6.648629047698	6.79932044912704	6.80493836681275	6.65535081146207	6.68467245736005	0.238900945050304	0.257390848574682	0.569199465955115
Merged-chr16-43354714-3	chr16	43354605	43354805	+	632.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	MTD|LTR|ERVL-MaLR	65491.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	3.49106055816242	3.5144693315462	3.2791076028772	3.31133095901315	3.41559477420964	3.06098060027919	3.26696296654115	3.02364901460021	-0.695103774098515	0.223276611007327	0.531283845151273
Merged-chr11-59543501-4	chr11	59543432	59543632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 2 of 9)	L1MB2|LINE|L1	846.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	6.29185954092261	6.12645164830975	5.38058890341718	5.15457355322034	6.28497528019225	6.1039139007945	5.85259735032888	5.75767031878183	0.316411676942933	0.366304400089926	0.670813545693138
Merged-chr1-180215245-4	chr1	180215154	180215354	+	944.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19234.0	NM_001359268	67426.0	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	4.57807547090551	4.5002666341668	3.93002518715042	3.8765479833941	4.56641262610445	4.46884939237739	4.52010054887233	4.24543797554806	0.488312184687464	0.263893358423384	0.575956378107443
Merged-chr4-142166129-4	chr4	142166083	142166283	+	864.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109684, intron 1 of 6)	intron (NM_001109684, intron 1 of 6)	44025.0	NM_144531	71529.0	Mm.255986	NM_144531	ENSMUSG00000040606	Kazn	2310007B04Rik|9030409G11Rik|AI256607|AI666764|AW061099|Kaz|Kazrin	kazrin, periplakin interacting protein	protein-coding	3.58314007775932	3.5935183873796	3.79165336540158	3.13359941419395	3.67378588120147	3.8123220508845	3.62393395483553	3.88174300711674	0.672273705701408	0.194506000709474	0.494914657342521
Merged-chr2-18772570-4	chr2	18772485	18772685	+	883.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11723.0	NR_126079	100041479.0	Mm.393659	NR_126079	ENSMUSG00000092353	Gm3363	-	predicted gene 3363	ncRNA	4.30331093851866	4.70940675754759	4.25476002243944	4.71829682676591	4.20386883619127	4.57211409627331	4.42131546046216	4.87482403969677	0.0175471045023213	0.96600974799293	0.988022131369328
Merged-chr10-96430374-4	chr10	96430271	96430471	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186630.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	5.58503356417689	5.68578600271849	5.3232489113827	5.9337845807069	5.57980524721729	5.21698482842214	5.53140019396556	5.70736289886242	-0.245373487632462	0.410380658543155	0.705794818013582
Merged-chr18-61099958-4	chr18	61099871	61100071	+	791.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-5601.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	3.76779795837328	3.71893934639003	3.76832140510452	3.82806047216138	3.70852200978747	3.99090517248447	3.7531802228552	4.04896360672035	0.293582902010285	0.513739373834982	0.776626777135012
Merged-chr2-59522258-4	chr2	59522161	59522361	+	875.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37608.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	4.17536584173749	4.60823601446758	4.77038553448082	4.18126157354325	4.32952840647956	4.30326344738936	4.46715275151947	4.17351600621907	-0.299146461428206	0.469352219971269	0.74827024582469
Merged-chr5-21054735-4	chr5	21054641	21054841	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	intron (NM_011203, intron 1 of 17)	1170.0	NM_001356591	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	4.62500960966897	4.6869746157018	5.27608639939034	4.99222528409033	4.72571849844105	5.21332953432343	4.690107487	5.13109203341136	0.0617299999755048	0.866647346826194	0.950019210311976
Merged-chr16-33418076-3	chr16	33417969	33418169	+	971.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358569, intron 1 of 8)	MTE2b|LTR|ERVL-MaLR	17624.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	3.67658241638385	3.72627688841532	4.32005552968787	4.13147071752099	3.58385291395128	3.33233530209604	3.66261768276057	3.7295768995047	-1.2205454226087	0.019256656302423	0.124731052775518
Merged-chr2-57191025-4	chr2	57190922	57191122	+	938.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	9191.0	NR_040633	75279.0	Mm.401987	NR_040633	ENSMUSG00000086396	4930555B11Rik	-	RIKEN cDNA 4930555B11 gene	ncRNA	4.78546588820769	4.79598884169023	4.94684569058825	5.5222861440069	5.24691709536862	4.8807715363121	5.38868987897745	5.58267923791056	0.413693948083345	0.269904811077235	0.581714699333117
Merged-chr16-78182343-4	chr16	78182227	78182427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73127.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	5.68838768427204	5.16433043556045	5.41290363952832	5.78892387449923	5.76492478119649	5.64978614408572	6.00345058499433	5.58195148803156	0.351703044749794	0.235723843286814	0.545663379778285
Merged-chr18-53944398-4	chr18	53944293	53944493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 10 of 12)	intron (NM_152809, intron 10 of 12)	82280.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	6.30767989890368	5.75984895427848	5.99967993014788	6.37566095330578	5.90443984994146	5.82785445669024	6.32641747364502	5.92795961952829	-0.208697950087215	0.449100917677131	0.734289388049352
Merged-chr19-34588369-4	chr19	34588299	34588499	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010501, exon 2 of 2)	3' UTR (NM_010501, exon 2 of 2)	4870.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	3.7854148235195	3.33147991777053	3.9764114179645	3.66607903056359	3.86207234503873	3.79862876588101	3.66456347000822	4.09974560321745	0.468232910204284	0.343397194518423	0.652082726193224
Merged-chr5-74195196-4	chr5	74195103	74195303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026878)	promoter-TSS (NM_026878)	-123.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	7.16011239223431	6.8559242026276	7.08633191794929	7.31429170457726	6.17958987726396	6.20581806766064	6.72536039030248	6.3136676567162	-1.06954448174151	4.75308281445796e-06	0.000141674908563779
Merged-chr3-14534342-4	chr3	14534243	14534443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163580, intron 1 of 18)	intron (NM_001163580, intron 1 of 18)	555.0	NM_001163580	71710.0	Mm.257449	NM_028915	ENSMUSG00000027550	Lrrcc1	1200008A14Rik|4932441F23Rik|AI195358|AI447421	leucine rich repeat and coiled-coil domain containing 1	protein-coding	6.56688230877702	6.2421881741867	6.48764947525017	6.68808418520506	6.2782628441535	6.42799453224107	6.51889618190636	6.4663103276018	-0.141371680805871	0.531706110401373	0.787562360467367
Merged-chr5-21395368-3	chr5	21395265	21395465	+	888.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	22692.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	3.69328941743599	3.50797036864104	3.69381673044476	3.8632531321045	3.40880337529569	3.64762189961386	3.57419618356836	3.74136045387401	-0.354122892643567	0.470246022402491	0.748973856088317
Merged-chr11-120142769-4	chr11	120142689	120142889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361697, intron 1 of 15)	intron (NM_001361697, intron 1 of 15)	8562.0	NM_001361698	72055.0	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	7.20491346390112	7.29423586598776	7.64234918619265	7.35847781510413	7.15929754359512	7.02702391237346	7.02963575480778	7.09697167073115	-0.407707921241933	0.0339955492926424	0.181938534479003
Merged-chr5-142879523-4	chr5	142879411	142879611	+	818.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033312, intron 3 of 4)	intron (NM_001033312, intron 3 of 4)	15727.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	3.86398959198976	4.09721871061982	3.96945315885266	3.9316811249181	4.24700295739849	3.98568047573005	4.26100890125066	4.01653385809136	0.454774489079234	0.274595229307458	0.586378652382967
Merged-chr8-7954205-4	chr8	7954109	7954309	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	706564.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	3.90331944852834	3.7550187464241	3.79834370171429	3.94444137945295	4.22678222783131	3.74081235585543	4.3090805115928	3.90161841299291	0.579712821156659	0.199533138206057	0.50147358341222
Merged-chr1-64318126-3	chr1	64318023	64318223	+	896.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-196734.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	3.95706427617302	3.8352688111042	4.27852163859025	4.07398699231056	3.67083236450884	3.51076347317081	3.84612762070364	3.32136766468049	-1.31203891484866	0.00989696827327711	0.0783251395067369
Merged-chr17-13008900-4	chr17	13008801	13009001	+	943.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013671, intron 2 of 4)	intron (NM_013671, intron 2 of 4)	1062.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	4.4179820089194	4.58052399027521	4.37705191045096	3.90069154829391	4.28059176627155	4.46313056513791	4.22478046608103	4.37424906005304	0.0162619113594455	0.969170506593907	0.988873837789174
Merged-chr7-48775617-4	chr7	48775481	48775681	+	812.233337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13422.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	3.60037640733716	3.5499373142669	3.31488747077421	3.247648683747	3.53591829792337	3.61023078163117	3.72937077369042	3.49196969069635	0.552141336472956	0.271660533958137	0.583251143082263
Merged-chr12-37248768-3	chr12	37248652	37248852	+	907.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178767, intron 2 of 12)	intron (NM_178767, intron 2 of 12)	7113.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	4.76697294192408	4.82939600851455	5.20558841961537	5.18342626609792	3.37691760525928	3.55512089857776	3.64515278114528	3.5822247305717	-4.81846608947903	9.09824957842421e-13	9.75307690877495e-11
Merged-chr10-57796290-4	chr10	57796150	57796350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020561, intron 1 of 7)	intron (NM_020561, intron 1 of 7)	1706.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	5.14354929406916	5.05499355194212	5.35448501911498	5.16686713965738	5.01571719839733	5.31803885396777	5.08657511941782	5.35076002305505	0.0202791747127976	0.946677761337958	0.98095209334417
Merged-chr19-3688683-4	chr19	3688585	3688785	+	709.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2121.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	3.64408726946115	3.46256489682085	3.53413414117446	3.63031657580068	3.70419553858994	3.52815728415224	3.73040183536404	3.92547391100666	0.483306148290021	0.309339142455706	0.621622697166796
Merged-chr9-107296645-4	chr9	107296541	107296741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009895)	promoter-TSS (NM_009895)	-18.0	NM_009895	12700.0	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	5.80775393845201	5.79524107607173	6.18276871053113	5.80263998064926	6.0664282094415	6.27915378489627	6.22455872713582	6.25219266468661	0.476050047313274	0.0500603725334883	0.231939105426913
Merged-chr1-86399524-4	chr1	86399411	86399611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10150.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	6.47906235699358	5.63785450477984	6.20065815629986	6.2371315625308	6.24326884075705	6.2324581817325	6.29823123520095	6.30840605792944	0.149337323410405	0.567094789470942	0.808122532096819
Merged-chr5-137856600-3	chr5	137856516	137856716	+	752.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133209, intron 2 of 4)	intron (NM_133209, intron 2 of 4)	1433.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	3.67854532992374	3.44285476998569	3.53419206251552	3.32529801568319	3.29446757469216	3.29537359484297	3.29932120794187	3.47995844048525	-0.521412026247784	0.31982199891786	0.631656381031906
Merged-chr15-66577519-4	chr15	66577434	66577634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081409)	promoter-TSS (NM_001081409)	-38.0	NM_001081409	239510.0	Mm.267473	NM_178718	ENSMUSG00000072501	Phf20l1	CGI-72|E130113K22Rik	PHD finger protein 20-like 1	protein-coding	7.43054114236787	7.62025129094425	6.97070586258571	7.54619751178379	7.79931712634145	7.9148404705372	7.78217248954291	7.45600693525417	0.429856122737424	0.0412456764247951	0.205489326117484
Merged-chr4-125123020-4	chr4	125122918	125123118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153159, intron 2 of 5)	intron (NM_153159, intron 2 of 5)	4863.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	5.61063736831385	5.64987449190745	5.53612478493264	5.57300004867699	5.42272405875308	4.96612878780617	5.37227440139532	5.06804342421536	-0.631883386781068	0.0316372816033017	0.173450671435062
Merged-chr1-193170077-4	chr1	193169977	193170177	+	986.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016851, exon 8 of 8)	3' UTR (NM_016851, exon 8 of 8)	-3392.0	NM_001160360	319266.0	Mm.482460	NM_181048	ENSMUSG00000079144	A130010J15Rik	-	RIKEN cDNA A130010J15 gene	protein-coding	4.90029079730226	5.02691155605939	4.90109083519238	4.90689463709464	5.40939358305806	5.0788476652377	5.27246094176141	5.52797179400599	0.756711020593996	0.0123431005427591	0.091622194589231
Merged-chr14-61172887-4	chr14	61172806	61173006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172809, intron 2 of 9)	CpG	34449.0	NM_015788	50720.0	Mm.440703	NM_015788	ENSMUSG00000048279	Sacs	A230052M14|DNAJC29|E130115J16Rik	sacsin	protein-coding	7.93677769981479	8.46676297107516	8.10116258551953	8.21031655413027	8.06995874212677	8.25305633555716	7.9703555968367	7.96852689402318	-0.163025783233248	0.370144632512159	0.674294883761598
Merged-chr7-118175712-3	chr7	118175624	118175824	+	941.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001031814, intron 29 of 62)	L1ME1|LINE|L1	-46099.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	3.78834154497081	3.6827938165485	4.01389150886347	3.98665060322769	3.33798463203249	3.50421444288777	3.44180522752586	3.88136932983096	-1.01131791901838	0.0474801546093192	0.224540969849862
Merged-chr10-60374329-5	chr10	60374243	60374443	+	778.664978	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 37 of 68)	intron (NM_001252635, intron 37 of 68)	-25383.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	3.59580248650837	3.31482080448573	3.44949264256136	3.0142671549343	3.27752753340988	3.45645955175244	3.08369084924017	3.22143996391228	-0.311901999733084	0.588452881368122	0.819738713937208
Merged-chr8-56311238-4	chr8	56311028	56311228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 4 of 6)	intron (NM_008278, intron 4 of 6)	16576.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	5.07370424023357	4.81059395017757	5.1030514642403	4.96434625133255	4.1776942028333	4.54041088047439	4.23646388610239	4.62714710745461	-1.29164197726827	0.000486043503086794	0.00755868265375026
Merged-chr1-52233337-4	chr1	52233253	52233453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113383)	promoter-TSS (NM_001113383)	-121.0	NM_001113383	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	8.90777445252998	8.95637726017557	9.02852699631261	9.08121182860004	9.0257443561881	8.97984199403464	9.17947448058702	8.82145499191654	0.0138517227211153	0.926502764368663	0.973020473242623
Merged-chr15-74687422-4	chr15	74687323	74687523	+	876.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14853.0	NM_018790	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	4.3923231637218	3.6543575311211	4.47246697727149	4.51160490918639	4.1626735185837	4.24645337783607	4.37265294499351	4.46950199011563	0.0243333860336041	0.957793129005902	0.984917255520481
Merged-chr7-143207266-2	chr7	143207166	143207366	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008434, intron 10 of 15)	L1ME1|LINE|L1	89281.0	NR_001461	63830.0	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	2.82398640923965	3.39899561371103	2.89746835624073	3.00023985350047	3.15989785673309	3.32690761460823	3.30752245269624	3.15474640232137	0.713406044765343	0.235961819382582	0.545918160675954
Merged-chr11-70433791-4	chr11	70433694	70433894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145429, intron 1 of 14)	intron (NM_145429, intron 1 of 14)	1214.0	NM_001271358	216869.0	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872|Arr3	arrestin, beta 2	protein-coding	7.78586769442702	8.1201460557169	7.77181156274921	7.60717993973863	7.70172345109121	7.74854119732411	7.28430757676757	7.61036188084872	-0.303257276805808	0.130520095544509	0.402130363128451
Merged-chr6-145248053-2	chr6	145247989	145248189	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021284, intron 1 of 4)	intron (NM_021284, intron 1 of 4)	2142.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	2.7392965984172	2.53334632583571	3.10284426092066	2.63568158345705	2.78350042135153	2.9175505445563	2.86156235000601	3.20204097668926	0.811604706496739	0.224037876046489	0.532128184797041
Merged-chr5-112254742-4	chr5	112254656	112254856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1064.0	NM_001312895	12960.0	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	6.38206445231968	6.0800967107328	6.15205457777234	6.25708360596219	6.24604614503891	6.69149467639805	6.40194021388814	6.61799154238454	0.399581009831805	0.0863424258579114	0.320425835773737
Merged-chr4-53239072-4	chr4	53238973	53239173	+	972.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-7123.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	4.73428632724325	4.76497965750748	5.11420352308883	5.13878219615393	4.80681979963228	4.65001861372202	4.99700218979633	4.84696874127594	-0.265287101163664	0.437300378622246	0.725612598782033
Merged-chr18-44387339-4	chr18	44387311	44387511	+	909.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027490, intron 1 of 10)	intron (NM_027490, intron 1 of 10)	6911.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	3.53726816809605	3.35693637836889	3.48577261373657	3.35330959811059	3.53149420304507	3.36597943170234	3.17898409753386	3.58557683606481	-0.00143721918355984	0.997797408226264	0.999049532170228
Merged-chr1-51789495-4	chr1	51789390	51789590	+	770.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010863, intron 13 of 29)	intron (NM_010863, intron 13 of 29)	126488.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	4.03652132314933	3.9577463873041	3.98968683295387	4.04896221844668	4.00141281343304	3.84138311707911	3.97290119863086	4.16648019457469	-0.0248699962564323	0.952812230768377	0.983276598943455
Merged-chr4-120819487-2	chr4	120819387	120819587	+	889.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048168, intron 1 of 9)	L3|LINE|CR1	-3774.0	NM_001357192	18046.0	Mm.318389	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	2.77761001007322	2.93045239087895	2.91309790320689	2.84909780221684	3.04699765747486	3.08507038441465	3.08067491216772	3.14588741440885	0.931810100105173	0.104579849365204	0.355647598530454
Merged-chr14-73474956-4	chr14	73474859	73475059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35090.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	5.38283553398415	5.13723701484837	5.29407872156793	5.23447587287996	5.47347538820955	5.61197953037457	5.20535352051827	5.59112202484692	0.390555687257641	0.172201792866077	0.465460474230468
Merged-chr17-56935584-4	chr17	56935492	56935692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022328)	promoter-TSS (NM_022328)	-204.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	8.26941705913273	8.27742474044953	8.11342262718624	8.13117659904751	8.22605533344325	8.57296706288242	8.36109555887185	8.14613900269211	0.172141111311049	0.305235277285579	0.617681861656628
Merged-chr12-98833199-4	chr12	98833128	98833328	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 21 of 43)	intron (NM_001081191, intron 21 of 43)	62206.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	4.81682052242464	5.03920938573042	4.69083243154964	4.7526105226826	5.3222901649091	4.95576106823864	5.50867441209174	5.25342458351041	0.860116607512612	0.00738987533722422	0.0633434413088009
Merged-chr15-81097667-2	chr15	81097609	81097809	+	689.75	f0_balb.idr|f1_balb.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	7338.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	3.64717866502343	3.54215110941465	3.32906386480527	3.45903614031425	3.54289889359164	3.37925488368103	3.19281433094118	3.44248678294191	-0.327100071792563	0.531201892879559	0.787095803840917
Merged-chr7-80860419-4	chr7	80860348	80860548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1660.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	6.08258796223642	6.04279526354755	5.44009970903486	5.74013705377279	6.06885769330298	5.9534435347054	5.93104363675582	5.49903359512895	0.0611446327282728	0.831964255519627	0.935667305160871
Merged-chr4-75063502-2	chr4	75063402	75063602	+	734.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	214790.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	2.98870505771732	3.01567968398871	3.05498686801706	3.19007131135885	3.0834996796093	3.50843964687908	3.27652578232104	3.17615025630887	0.729839203283658	0.200511344364552	0.502543620512921
Merged-chr17-27553103-3	chr17	27553003	27553203	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3471.0	NM_001166536	15361.0	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	3.48556156764218	3.35769793735879	3.37564498677297	3.35994287296497	3.65399550852461	3.48897900892918	3.30504618953508	3.3739005758558	0.265114184582818	0.602537714136461	0.827746549215817
Merged-chr11-79963506-4	chr11	79963426	79963626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1139.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	5.32938147552168	5.32133380124208	5.16736775646304	5.48114693478419	5.40009654857575	5.75194763061873	5.50216223013671	5.60261116539304	0.383128098919697	0.17770425606048	0.473241965060196
Merged-chr5-140664022-2	chr5	140663922	140664122	+	806.875	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028833, exon 23 of 23)	3' UTR (NM_028833, exon 23 of 23)	-14991.0	NM_175274	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	3.48934084371051	3.21572048148643	3.44239703353391	3.01590425123202	3.13163095088379	3.15128270191301	3.15825140885778	3.2273180818938	-0.487852958996394	0.394639636111446	0.693682147756976
Merged-chr16-17760146-4	chr16	17760065	17760265	+	907.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145479, intron 1 of 6)	CpG	544.0	NM_001359068	224023.0	Mm.282807	NM_145479	ENSMUSG00000022750	Klhl22	2610318I18Rik|Kelchl	kelch-like 22	protein-coding	3.87981641420504	3.77202981624032	3.77918644088374	3.73719986326229	4.15764688933367	3.84414736727043	3.71101281702918	3.82857508128285	0.341838931321905	0.44945421429026	0.734617277148016
Merged-chr13-56774419-4	chr13	56774287	56774487	+	864.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302372, intron 11 of 11)	intron (NM_001302372, intron 11 of 11)	70719.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	3.7037766281584	3.65049971002685	3.54319349228358	3.73429493143656	3.57552809492508	3.71529660063968	3.53016675654967	3.79889819990766	-0.0307272072598963	0.948107785726987	0.981362631498556
Merged-chr5-140702292-4	chr5	140702208	140702408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028833)	promoter-TSS (NM_028833)	70.0	NM_028833	74239.0	Mm.179704	NM_028833	ENSMUSG00000036555	Iqce	1700028P05Rik|mKIAA1023	IQ motif containing E	protein-coding	6.32753300743552	6.20046953408181	6.07625660978055	6.15059524937923	6.35572672076307	6.37389957591716	6.06653852351109	6.05035409876239	0.0561924342791011	0.810001247608804	0.926763756021251
Merged-chr7-44987519-2	chr7	44987419	44987619	+	964.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045266, intron 1 of 1)	RSINE1|SINE|B4	619.0	NR_045266	100502630.0	Mm.490013	NR_045266	ENSMUSG00000087138	Gm15545	-	predicted gene 15545	ncRNA	2.93874866563223	2.84434175430522	2.93910642560619	2.99695753349675	2.94987550683437	3.04626339346767	2.80402070356495	2.93765954577825	0.00951974993971276	0.987192978089839	0.995258250959001
Merged-chr8-66400201-4	chr8	66400095	66400295	+	896.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 5 of 7)	Lx8|LINE|L1	13894.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	4.26069843151352	4.08775874098489	4.57859947239576	4.39282394479077	4.08506902119728	4.13830560377567	4.44775169799262	4.25871620303009	-0.260194135316603	0.522537498138213	0.781971587334536
Merged-chr9-44655843-3	chr9	44655722	44655922	+	723.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-17411.0	NM_001277851	58866.0	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	3.20333321163235	3.3984122082568	3.07031141270249	3.51892563370378	3.37544915948923	3.65399219108047	3.25421938089881	3.37976605100044	0.345576759348534	0.536410254553238	0.790399040287221
Merged-chr9-21424820-4	chr9	21424723	21424923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253893)	promoter-TSS (NM_001253893)	-85.0	NM_007871	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	8.66239149578507	8.78770639509317	8.42927193205833	8.48636252144788	8.46196017982897	8.84614202100234	8.48621631719049	8.56780563995905	-0.00175241761271037	0.99183709987707	0.996882127784068
Merged-chr1-64753885-4	chr1	64753774	64753974	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16124.0	NM_022721	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	4.28239017235635	3.98337923937608	3.99192963232183	4.61002190032341	4.21268441372061	4.16936533648837	4.38655520549636	4.32301397219224	0.022434147306904	0.958919101422439	0.985325253500605
Merged-chr12-41484917-3	chr12	41484796	41484996	+	760.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271708, intron 1 of 2)	intron (NM_001271708, intron 1 of 2)	1161.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	3.83708499683103	3.73051273121236	3.88559939673842	3.9249488486874	3.58990542447376	4.00675452706209	3.66767617610228	3.56504663179945	-0.408328783459615	0.384664433191457	0.686147496244354
Merged-chr16-22264825-4	chr16	22264740	22264940	+	878.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330555, intron 1 of 9)	intron (NM_001330555, intron 1 of 9)	1165.0	NM_001330554	20462.0	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	4.42465091225974	4.60857438644407	4.38156544968882	4.40403061225165	4.54913243196398	4.31657004976574	4.60239158833668	4.54552607840298	0.126839298051151	0.727616746606533	0.891575922190683
Merged-chr13-59836219-4	chr13	59836130	59836330	+	912.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13083.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	5.06410109242054	4.88293792539528	4.84021023309432	5.22262210550639	4.31062399877414	4.74416508053081	4.20446533026583	4.56397713894626	-1.19673819564452	0.0012706088496047	0.0162985977549663
Merged-chr15-99009011-3	chr15	99008914	99009114	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20877.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	4.37390135642419	4.47237536250647	4.53833744359491	4.25376311753521	4.09008773323334	4.74553365295798	4.31087607747861	4.37182170576896	-0.0352884374507941	0.930035319694119	0.974727857709636
Merged-chr13-30933174-4	chr13	30933091	30933291	+	794.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025588, intron 4 of 27)	intron (NM_025588, intron 4 of 27)	14570.0	NM_153072	210554.0	Mm.450571	NM_153072	ENSMUSG00000076430	Hus1b	-	HUS1 checkpoint clamp component B	protein-coding	3.95822616192829	3.88817278144705	3.56436143938821	4.17597923280635	4.10991850474221	3.80834555909857	3.84207582673867	4.29520870836823	0.277501097539602	0.564196877235793	0.806599371831898
Merged-chr3-75910474-3	chr3	75910381	75910581	+	845.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291069, intron 2 of 15)	intron (NM_001291069, intron 2 of 15)	46468.0	NM_175193	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	3.43954540226554	3.56624720428447	3.6094755271951	3.68858589037412	3.50581324610874	3.42682794361393	3.59499838388799	3.93187763058907	0.132209593791962	0.791663817363756	0.919252187122779
Merged-chr5-134214593-4	chr5	134214494	134214694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359852, intron 13 of 14)	intron (NM_001359852, intron 13 of 14)	15031.0	NM_001286037	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	6.10187163174919	5.94744799110225	6.06473649188097	5.94780938846245	5.53198558672537	5.46647258302682	5.86875775324962	5.44810526148065	-0.691531115437966	0.00819656145782108	0.06825257931753
Merged-chr10-111422818-4	chr10	111422733	111422933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50394.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	5.96938332235177	5.89151577519197	5.83524752491978	6.21458565179672	5.66323286787599	5.53129487049416	6.20645837530451	5.62518047914968	-0.342696395670529	0.226565540103507	0.53520075526854
Merged-chr2-45118303-3	chr2	45118195	45118395	+	890.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355288)	promoter-TSS (NM_001355288)	-853.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	3.29470326615182	3.96091970235796	3.64996242277836	3.16409804099677	3.68784403239825	3.66018066610027	3.77960402296511	3.42235947381711	0.281635518855344	0.613187796389834	0.833119630742334
Merged-chr4-149662342-4	chr4	149662256	149662456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 3 of 23)	intron (NM_001029837, intron 3 of 23)	960.0	NM_001164052	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	5.76872085032394	5.81048868228514	6.24616191816608	6.21428363407341	5.61813270204151	5.66920462328313	5.83677496497627	5.93053341592801	-0.439127636473223	0.102938453358303	0.352313130335656
Merged-chr10-111473679-2	chr10	111473579	111473779	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152558, intron 1 of 14)	CpG	452.0	NR_152558	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	5.93413724407666	5.81077408200111	6.08118841289419	5.7117575547079	5.6445163634633	5.69991107038834	5.92663608848525	6.29293774861087	0.049548604631381	0.858495266225782	0.946576014812915
Merged-chr16-13197461-4	chr16	13197378	13197578	+	821.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59003.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	4.05789046435403	3.85058801711447	3.86153048765906	4.04135881822599	3.70036393324435	4.13615461085067	3.67809034486665	4.376023209142	0.114634832011579	0.809365066757677	0.926399566100386
Merged-chr8-46923591-4	chr8	46923481	46923681	+	775.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-63306.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	3.75369506096699	3.97245286518032	3.8639269198002	3.93087320054863	3.9039202544895	3.98503890285581	4.2081573244311	4.10084689345575	0.440178063954181	0.304052669456945	0.616761611834593
Merged-chr13-112343788-4	chr13	112343676	112343876	+	815.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 6 of 11)	intron (NM_001168403, intron 6 of 11)	55258.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	5.16278252657261	4.44305427667346	4.47650999966704	4.49742601118806	4.09240449656272	4.96969871518792	4.9069423944122	4.64365409052949	0.0325204663774774	0.940685507945129	0.978654793543509
Merged-chr12-31997057-4	chr12	31996973	31997173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011158, intron 2 of 10)	MamRep605|LTR?|LTR?	-46828.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	6.72445764089612	6.214935556398	6.22222328509219	6.74321159495241	6.63800556011408	6.84306781800896	6.85155608008057	6.73506885206343	0.360854334857783	0.12854306118919	0.398913247084019
Merged-chr8-77444287-2	chr8	77444187	77444387	+	945.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-72769.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	3.04947739423706	2.73054773016138	2.82433485105821	2.75177434960476	2.70503244211147	2.93234097446201	2.61767397299873	2.69357542580414	-0.472259041759309	0.466076457282911	0.74629927630325
Merged-chr16-10486943-4	chr16	10486837	10487037	+	983.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243760, intron 1 of 18)	intron (NM_001243760, intron 1 of 18)	-1241.0	NM_007575	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	5.1869526014911	6.21116378992695	5.29269607638648	5.30769186433869	6.14052858483991	5.8439762514216	5.42324895852504	5.25503445681159	0.239708455449616	0.527794037188877	0.784574591591773
Merged-chr16-90197021-4	chr16	90196929	90197129	+	807.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23713.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	3.89207780229191	3.40960928437364	3.84631651373897	3.81368733174508	3.61384788969376	3.81497862665045	3.51361367268481	3.84397134348906	-0.161779639537639	0.741242814446063	0.898139463026673
Merged-chr5-90897618-4	chr5	90897541	90897741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6258.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	7.94839368778407	7.61350097334746	7.54654340606364	7.72491608254249	7.75731404348064	7.49399101101014	7.61433455884066	7.43648996003166	-0.169744942485356	0.360003931927183	0.665611988334495
Merged-chr10-95533521-4	chr10	95533431	95533631	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	RLTR17|LTR|ERVK	18369.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	4.92660273710709	5.0745814795203	5.15655760021183	4.75802893464633	5.25844770169995	5.23565733038844	4.86762858576281	4.40289914416179	0.0244407930389823	0.947900251362015	0.981348536548879
Merged-chr11-115185132-3	chr11	115185019	115185219	+	989.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025400, intron 2 of 6)	intron (NM_025400, intron 2 of 6)	2197.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	3.66381265338223	3.58918063376443	3.59534023905492	3.07626711819229	4.44936757563039	4.30435122656943	4.90347633320269	4.84640399632397	3.25225106636751	1.25033947883283e-11	1.11386625486661e-09
Merged-chr4-57904477-3	chr4	57904377	57904577	+	689.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11787.0	NM_178727	242484.0	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	3.38895791687133	3.30934897984558	3.2783930597039	3.31082683652468	3.14362723590105	3.3908683077571	3.14653942838569	3.38751414948105	-0.199227993373806	0.708085979466419	0.882710273980338
Merged-chr17-24413829-4	chr17	24413744	24413944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009070)	promoter-TSS (NM_009070)	669.0	NR_033554	654822.0	Mm.489806	NM_001039561	ENSMUSG00000073437	D330041H03Rik	-	RIKEN cDNA D330041H03 gene	ncRNA	4.77806327123186	4.73106933045594	4.2621165128373	3.91449228712366	5.3481607724013	5.26219663523412	5.09330042791536	5.1741208787241	1.57211651534123	5.44022607575955e-05	0.00121770393662418
Merged-chr8-25016246-3	chr8	25016148	25016348	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027194)	promoter-TSS (NM_027194)	674.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	4.04585365003613	4.57836886826823	4.5550539631712	4.47507803775212	4.5202010711104	4.38278661437459	4.13769075444985	4.69598957670861	0.0422657923226204	0.917019832334864	0.969376770379679
Merged-chr5-92137824-4	chr5	92137722	92137922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019490)	promoter-TSS (NM_019490)	-97.0	NM_001359195	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	8.74496323459804	8.78016365752582	8.8310582191666	8.90297144768691	8.70747414281157	8.81973631090229	8.79125189554655	8.36908411558477	-0.16799880258174	0.300161892354774	0.612251288689364
Merged-chr17-47909415-4	chr17	47909320	47909520	+	907.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028767, intron 1 of 16)	intron (NM_028767, intron 1 of 16)	15212.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	4.44701876173434	4.21685323647965	3.60962290703761	4.20756895808978	4.23412194989489	4.244023539029	4.14640365260833	3.91366499298151	-0.0335224104692955	0.942387707734952	0.979088236393896
Merged-chr14-63117668-4	chr14	63117579	63117779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-4783.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	6.91537611807793	7.0773218114491	7.32800636970081	7.11642485230638	6.70209357754748	6.78246203336507	6.82794156236202	6.69689576059365	-0.511271778405061	0.010160991972156	0.0798112169042252
Merged-chr11-50174786-4	chr11	50174706	50174906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026543)	promoter-TSS (NM_026543)	-45.0	NM_026543	68067.0	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	7.89224253237918	7.93995896379621	7.62831364736832	7.73578472188094	7.67268561306956	7.56752200991539	7.91698643024398	7.40538979212377	-0.193565276308401	0.305058749989566	0.617546843314453
Merged-chr13-99005993-1	chr13	99005893	99006093	+	557.0	f0_balb.idr	Intergenic	L1ME3Cz|LINE|L1	-21428.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	3.01127412834329	3.03744282659836	3.31099085000831	3.10525437112048	3.19977691326942	3.25077310817753	3.24362555322969	3.36134653234246	0.548378833969825	0.314071134670575	0.626092793780228
Merged-chr2-32591234-3	chr2	32591120	32591320	+	767.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011373, intron 2 of 4)	B2_Mm2|SINE|B2	4142.0	NM_011373	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	3.49797100426776	3.82284989837543	3.65835791550577	3.14372926444372	3.48257905027261	3.43265198946782	3.1706289405101	3.92559357912161	-0.0671672506234235	0.908121238894283	0.965960244231753
Merged-chr5-122394092-4	chr5	122393988	122394188	+	892.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 1 of 6)	B3A|SINE|B2	2210.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	4.53270154765304	4.30402128809466	4.40134348207937	4.5177264799075	4.96740387845872	4.62221624403582	4.6684537379016	4.72402516395377	0.684551920193075	0.0544452784729592	0.243534247246073
Merged-chr11-88107548-4	chr11	88107425	88107625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198013, intron 1 of 10)	intron (NM_198013, intron 1 of 10)	8379.0	NM_198013	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	5.77622496014291	6.36794676813283	6.2657598777173	5.99649258039952	6.25067356146168	6.17705814452238	6.32204285838311	6.2427318371675	0.20134897578059	0.412708483590065	0.707787832411092
Merged-chr6-136687642-3	chr6	136687537	136687737	+	911.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25744.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	4.3809072970259	4.36937870102645	4.19882831927207	4.41330989194091	2.96465449419456	3.31034370381302	3.25717549269617	3.26590116384639	-5.13717672828717	1.08465324405131e-08	5.71462126264459e-07
Merged-chr1-165634593-4	chr1	165634491	165634691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347128)	promoter-TSS (NM_001347128)	-50.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	8.79647992669482	8.79233960324613	8.84910269275766	8.99739703083227	8.56732094929225	8.48348868025262	9.02145998735014	8.69179051314881	-0.196093584850517	0.256117591155667	0.567721270973876
Merged-chr8-115585818-4	chr8	115585714	115585914	+	892.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121080.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.62593721844616	5.69366201605231	5.53190386299187	5.2617237563433	4.9162379961945	5.2707688647529	4.61942685836305	4.86213809221458	-1.10861553191321	0.000850856415509753	0.0118210411699812
Merged-chr2-167892119-4	chr2	167892013	167892213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40214.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	5.64694884940717	5.28555974276101	5.56970931849377	5.66709861335805	5.7283203424044	5.57365460024005	5.71599260848981	5.56579806218657	0.160714062868755	0.552815401304923	0.799873237323185
Merged-chr17-26229993-4	chr17	26229881	26230081	+	963.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	14261.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	4.95777490347961	4.76541467942902	4.81929475930266	5.17823589252218	4.62138332776673	4.51782087900211	4.68200301935448	5.05031374723351	-0.455408359250341	0.202069912929777	0.504566133212499
Merged-chr7-127165801-4	chr7	127165709	127165909	+	904.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27986.0	NM_001037810	20737.0	Mm.283714	NM_009259	ENSMUSG00000051457	Spn	A630014B01Rik|Cd43|Galgp|Ly-48|Ly48	sialophorin	protein-coding	4.54098274536138	4.60831209376871	4.49606287034333	4.45923595084831	4.95325549342381	4.95984089707725	4.86931256234109	5.21785079944469	1.00033898311763	0.00256593590084188	0.0282900792264598
Merged-chr7-64038106-3	chr7	64037995	64038195	+	942.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99180.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	4.29424498206035	3.7563606413902	4.00288530011983	4.08611026453162	3.84128287824499	3.67748467110757	3.98553302473483	3.95267331837786	-0.492125903796187	0.278216954851068	0.590365031878851
Merged-chr18-23942391-4	chr18	23942320	23942520	+	877.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12268.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	3.89983332618659	4.12925951055461	4.23206301258977	4.28206619375601	4.03416543527242	4.12606506234095	4.08254516621142	4.00153698109398	-0.247827261402608	0.551775873477007	0.799073691139046
Merged-chr17-71259921-2	chr17	71259820	71260020	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	51091.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	5.84830379082208	6.27618105671609	5.82967942585032	6.31253435474218	3.51797470732132	4.14550362883186	4.30959128456297	3.92223103112429	-5.09041532781582	3.07701251418677e-08	1.4768622639737e-06
Merged-chr13-21160873-4	chr13	21160763	21160963	+	947.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17808.0	NM_146534	258527.0	Mm.271440	NM_146534	ENSMUSG00000045474	Olfr1368	MOR256-15	olfactory receptor 1368	protein-coding	4.422479937834	4.44590303659211	4.38056776240985	4.25544934352233	4.7014132339349	4.21609588311025	4.27222293634097	4.54004469310249	0.209712998025009	0.588377752520917	0.819675135431917
Merged-chr8-64947326-6	chr8	64947250	64947450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163747, intron 1 of 4)	CpG	165.0	NM_028427	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	7.78011849259852	7.89720235157765	8.53032257441369	7.99060429156123	7.83479967726729	8.11105470961074	8.06821839778458	7.85441503434034	-0.142495491477859	0.496335345900713	0.766298366394092
Merged-chr2-127142336-3	chr2	127142216	127142416	+	928.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355634, intron 1 of 2)	intron (NM_001355634, intron 1 of 2)	274.0	NM_001163528	73338.0	Mm.57559	NM_001163527	ENSMUSG00000074825	Itpripl1	1700041B20Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 1	protein-coding	4.1178797856455	3.867157691242	3.8355828350722	4.16844991606566	3.58137232192174	3.95637016202962	3.87121377515098	3.98248303110612	-0.463908102649305	0.311958411652676	0.623813898793094
Merged-chr17-35050350-4	chr17	35050255	35050455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_033444, exon 1 of 6)	5' UTR (NM_033444, exon 1 of 6)	112.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	4.89176946779018	5.06107703668179	5.03545616016834	4.64503203892647	5.27898838956432	5.06840932766309	5.16823330783054	5.129456378009	0.520634671457187	0.102449141846336	0.351572369808042
Merged-chr2-180024856-4	chr2	180024850	180025050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177727)	promoter-TSS (NM_177727)	-37.0	NM_177727	241846.0	Mm.21577	NM_177727	ENSMUSG00000039108	Lsm14b	9430078B04|BC040823	LSM family member 14B	protein-coding	8.1520185300571	8.03215390325429	8.26068514766566	8.255397066533	8.29655529906265	8.37388772582688	8.51058426365241	8.05762592370363	0.177572421418391	0.296770809755873	0.608721384001305
Merged-chr9-102626305-4	chr9	102626230	102626430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181394)	promoter-TSS (NM_181394)	34.0	NM_181394	69010.0	Mm.2000	NM_181394	ENSMUSG00000035048	Anapc13	1810004D07Rik|APC13|SWM1	anaphase promoting complex subunit 13	protein-coding	6.87979223131766	7.11274105274514	7.38170770994743	6.58137877864836	7.35636925724695	7.15520264557481	7.46349138902664	7.57973936207187	0.528060288911419	0.0236243948036603	0.142819840133322
Merged-chr4-107989146-4	chr4	107989050	107989250	+	956.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146255, intron 2 of 10)	intron (NM_146255, intron 2 of 10)	20816.0	NM_146255	242607.0	Mm.192040	NM_146255	ENSMUSG00000008932	Slc1a7	A930031E15Rik|Eaat5	solute carrier family 1 (glutamate transporter), member 7	protein-coding	5.1483570073322	5.28468537174885	5.29654628075503	5.3340546239859	4.79375665159738	4.7965598541049	4.76851366730322	5.11406632640379	-0.774622782671411	0.0135618700547011	0.0978133902749588
Merged-chr11-115496751-3	chr11	115496615	115496815	+	705.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008258)	TTS (NM_008258)	-4901.0	NM_015807	50773.0	Mm.390379	NM_015807	ENSMUSG00000020736	Nt5c	Dnt|Dnt1|Umph-2|Umph2	5',3'-nucleotidase, cytosolic	protein-coding	3.90780094391083	3.62325601944265	3.5273361917426	3.40846551788981	3.5383915417272	3.46333168893825	3.4575940689666	3.52541666517736	-0.395949244778748	0.435882217252086	0.724865609157659
Merged-chr2-166357964-2	chr2	166357864	166358064	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84056.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	2.64604808814494	2.69701172879902	2.78369147009312	2.69882965781527	2.76190479839564	2.89191866898777	3.20651612730018	2.84596701399205	1.03284622195685	0.0995177006309169	0.34601262276319
Merged-chr6-134144908-3	chr6	134144815	134145015	+	803.722229	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001303102, intron 3 of 8)	ORR1F|LTR|ERVL-MaLR	109215.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	4.63100362033785	4.48103497412634	4.05107791717398	4.33236481198854	4.07074518730393	4.06561382618473	4.08536101463475	4.33021081106966	-0.61324887429376	0.139647303162709	0.415584722460843
Merged-chr4-128858435-3	chr4	128858338	128858538	+	853.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25702.0	NM_178110	67525.0	Mm.30653	NM_178110	ENSMUSG00000041000	Trim62	6330414G21Rik|AI450348|Dear1	tripartite motif-containing 62	protein-coding	3.17809947734625	3.25658441661949	2.92258942160991	3.07497643842058	3.18036564658583	3.28979531572765	3.1666513103312	3.23359064814263	0.40001968684914	0.469097272485249	0.748095998770725
Merged-chr9-22131297-4	chr9	22131182	22131382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007388)	promoter-TSS (NM_007388)	583.0	NM_001102404	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	5.66991566126464	6.03410086530605	5.90599919348774	5.4203567928767	5.60622356387673	5.9679961513561	5.4182866729066	5.64080901933601	-0.162145661974014	0.584321190031278	0.817562205564865
Merged-chr7-81843138-4	chr7	81842960	81843160	+	870.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-13629.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	3.29948089505766	3.34240075837909	3.52736963949841	3.0482973028908	3.21405608138645	3.53553683339066	3.65818955162017	3.62542511227799	0.724960240380992	0.182537379549202	0.47913958546051
Merged-chr18-34963641-4	chr18	34963537	34963737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9286.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	5.90655391635988	5.64724432831605	5.7345836129674	4.98285549042536	6.40984267429262	6.23558938421389	6.33443788685833	6.20955786954066	1.13524282941603	0.000117132845279076	0.00231401576300843
Merged-chr19-53903246-4	chr19	53903138	53903338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168492)	promoter-TSS (NM_001168492)	-113.0	NM_001168492	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	8.22670718157556	8.13404943585364	8.17952361904301	8.19253933628	8.59031543715711	8.54637749319093	8.52086381585378	8.26932474347442	0.388782520866183	0.0126968495341966	0.0935543051290423
Merged-chr11-94687380-4	chr11	94687276	94687476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9883.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	6.74198519492469	6.92011850641569	6.70001847242891	6.9262907827339	6.46318967193749	6.24812022149119	6.69465434602545	6.36227078113622	-0.544749809231015	0.0120232069187372	0.0900841942388206
Merged-chr17-33816903-3	chr17	33816843	33817043	+	927.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357162, intron 2 of 5)	intron (NM_001357162, intron 2 of 5)	6420.0	NM_030697	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	3.61657955437408	3.87747241357977	3.71901342765581	3.90439380093223	3.35092805231701	3.62224094175644	3.37409411592669	3.38389827239984	-1.18855538102587	0.018551751034058	0.121800634467666
Merged-chr3-127323068-3	chr3	127322974	127323174	+	776.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	85984.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	4.32238420869991	4.10256978928341	4.05177657382502	4.25921290746876	3.97244235396728	4.32047602621493	4.13078150552048	4.2362432256071	-0.0764072377763101	0.851379808149688	0.94395961613626
Merged-chr6-124359165-4	chr6	124359064	124359264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2078.0	NM_001177502	76921.0	Mm.425335	NM_001177502	ENSMUSG00000079346	1700013D24Rik	-	RIKEN cDNA 1700013D24 gene	protein-coding	6.27782095980346	6.180318258327	6.29767087562534	6.42285250995755	6.40821999570314	6.27338856500976	6.30196577898277	6.36541290330347	0.0526221224526872	0.810728222330105	0.926854276252049
Merged-chr5-35755540-4	chr5	35755444	35755644	+	975.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2336.0	NM_001177697	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	5.56307665179263	6.25805436194931	5.64447795728568	5.3939496724661	5.64486133142642	5.94232687230861	5.61577552937951	5.1005294770162	-0.245795264768752	0.470846270510513	0.749510604688982
Merged-chr10-26753325-3	chr10	26753234	26753434	+	900.138855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19178.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	4.17737293538404	3.81065751120962	3.7869481848725	3.93721989670828	4.08056563596802	3.41442350718217	3.55241199084342	3.43732278552064	-0.785530419303147	0.146538934217483	0.426967777286073
Merged-chr2-167752191-2	chr2	167752091	167752291	+	863.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	61014.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	2.88074806682485	3.0296077810881	3.13734920454949	2.98629518011523	3.45447469040216	3.12451909712027	3.12561383448846	3.13570799474627	0.848277332367189	0.136645054989133	0.411151361943764
Merged-chr2-131166026-4	chr2	131165916	131166116	+	825.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B4|LTR|ERVL	-5935.0	NM_026091	67326.0	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	3.73402543465908	3.70950353206165	4.09945967022176	4.0797504782055	4.03973758358479	3.91446942689289	4.24925075999702	4.38008211757542	0.599981574670821	0.183541966943787	0.480589084207321
Merged-chr11-74476124-4	chr11	74476014	74476214	+	898.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 3 of 24)	intron (NM_001015046, intron 3 of 24)	111443.0	NM_001011851	258153.0	Mm.376124	NM_001011851	ENSMUSG00000058275	Olfr412	MOR127-5P	olfactory receptor 412	protein-coding	5.21473490519412	5.56646575787228	5.27351859836328	4.23311741359433	4.80511243881936	5.35936936088256	4.8928212713738	4.75485248233124	-0.351923911033468	0.413634503387134	0.708560125062399
Merged-chr17-85488912-4	chr17	85488816	85489016	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	129480.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	6.67545478334891	6.27354480482754	7.05744984696941	7.23617727598218	5.69881495616902	5.55158144673429	5.91193488768078	5.91337646288133	-1.64882148608646	1.0010869015716e-08	5.30576057832949e-07
Merged-chr4-55567417-4	chr4	55567286	55567486	+	804.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34911.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	3.99047145686542	4.1262047652653	3.94349228035743	4.11746131227344	4.07363113806319	3.73170376198985	3.92687119534563	3.54900356725874	-0.565915123374581	0.22228916512941	0.530315094234949
Merged-chr5-105731276-2	chr5	105731176	105731376	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	30466.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	4.43342389312648	4.75496784872765	4.8707692527763	4.79458451490368	4.32329680958381	4.21496661865638	4.17915960346009	4.38718497192146	-1.02735778976538	0.00689067216964168	0.0602093638384112
Merged-chr7-45706078-4	chr7	45705979	45706179	+	943.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016974, intron 1 of 3)	intron (NM_016974, intron 1 of 3)	832.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	4.41873281255639	4.06629738423089	4.5038900045399	4.34092260795353	4.69008098795859	4.59358848556867	4.26293291806301	4.88481990028362	0.653612944988912	0.0939970231252979	0.335402752608561
Merged-chr10-16960612-3	chr10	16960511	16960711	+	822.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038020, intron 5 of 8)	L1MCa|LINE|L1	135171.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	3.76022525136816	4.32654676912711	3.64229175857371	3.27936349994204	4.4039916315897	4.19077211247593	3.9995829556903	3.5772198148921	0.701395892189111	0.211462354846382	0.51607702584897
Merged-chr1-64195469-3	chr1	64195344	64195544	+	869.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74055.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	3.52035472537271	3.29347468965758	3.5728661312773	3.36484270116169	3.63982067470947	3.58172404793632	3.39734403682102	3.40823912216567	0.269187490138876	0.592769661023774	0.822397929572839
Merged-chr6-134433464-4	chr6	134433380	134433580	+	868.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355686, intron 5 of 5)	intron (NM_001355686, intron 5 of 5)	19052.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	3.97413300546048	3.86938879819762	3.5378418365826	4.12710428476543	4.32598871533251	4.04517745698041	4.60774741127591	4.62792068728798	1.27511428048135	0.00718419741424644	0.0621039577056895
Merged-chr5-102057226-3	chr5	102057129	102057329	+	895.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	12692.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.87149034015982	3.63075253241874	4.00583615096593	3.8838220551455	3.74945668091895	3.47424168134009	3.94491984290711	3.49006915116911	-0.506207842759269	0.30239811045466	0.614824619499336
Merged-chr15-86201207-4	chr15	86201095	86201295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13264.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	7.45130581422028	7.48256890931148	7.68235929900461	7.59789876631331	7.14740296583142	7.25131589403684	7.16932028846868	7.00367451944014	-0.555979889139088	0.0020048171297031	0.0234396975156269
Merged-chr2-128818443-1	chr2	128818343	128818543	+	1000.0	f0_balb.idr	exon (NM_028248, exon 1 of 19)	exon (NM_028248, exon 1 of 19)	140.0	NM_001355629	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	6.2892139865492	6.6312540487641	7.04928170369544	6.56952373209079	6.33019910858662	6.78383532650302	6.17584908558791	6.80388178846247	-0.164382306420169	0.537772124004107	0.791223080787503
Merged-chr7-27536807-4	chr7	27536695	27536895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 10 of 13)	intron (NM_001317355, intron 10 of 13)	13534.0	NM_001033315	233020.0	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	7.37840758442676	7.47434254395609	7.60219483900061	7.65829711318721	7.34627258812019	7.195999635162	7.63882673952358	7.5360905228216	-0.131584190319425	0.487680522368929	0.761041215068359
Merged-chr19-60982077-4	chr19	60981946	60982146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	92297.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	5.85660856689786	6.12597158162532	6.49394622689317	6.43799501741047	5.59598732942309	6.08437748819489	6.19310601526475	6.12323829468054	-0.387839960539733	0.164823727366671	0.455072150356386
Merged-chr11-97702606-4	chr11	97702498	97702698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011971)	promoter-TSS (NM_011971)	-836.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	5.94819772111139	5.87455796259336	5.44903127699538	5.49761344240156	5.94486021843645	5.98721672126776	6.02253066572153	6.21748769904235	0.555097044319832	0.0367042428487636	0.190734715298594
Merged-chr6-72522545-4	chr6	72522456	72522656	+	991.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-21835.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	4.76298542334702	5.27064562433563	5.18743137468478	5.16452921668341	5.3316734648863	5.07467294982219	5.6876444617209	5.73433361777156	0.659378422418274	0.0433837842865567	0.211870626533984
Merged-chr1-151571440-4	chr1	151571351	151571551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022018)	promoter-TSS (NM_022018)	78.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	6.1335237858734	6.57510197724288	6.13461224151084	5.75690624088898	5.90039475487496	6.07076670170113	6.32121816557432	5.7354488520725	-0.23638115817414	0.416206106735363	0.710097010427652
Merged-chr3-95996120-4	chr3	95996031	95996231	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023320)	promoter-TSS (NM_023320)	-292.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	4.8547967273088	4.93048451774304	4.78219163777772	5.08108236169574	4.90140609575388	4.83866015267661	4.72174357546017	4.48356660247319	-0.36166742383429	0.291258634537343	0.603572212289902
Merged-chr8-117343166-4	chr8	117343058	117343258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-6012.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	6.73630705082283	6.77360814457472	6.9783130478661	7.15891641088226	6.66670330879573	6.4602111357724	6.71779674984507	6.89818560172495	-0.338182366440563	0.124362291323247	0.391403587464513
Merged-chr2-45245686-4	chr2	45245586	45245786	+	911.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-128244.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	5.06609246550887	5.64886374877867	4.65052645109885	4.91123875819424	4.98516260015071	5.06971416137058	4.58448677509467	4.81462702298392	-0.478392021241247	0.217093707325965	0.523902796872516
Merged-chr13-23746558-4	chr13	23746423	23746623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175664)	promoter-TSS (NM_175664)	-211.0	NM_175664	319178.0	Mm.390567	NM_175664	ENSMUSG00000075031	Hist1h2bb	H2b-143	histone cluster 1, H2bb	protein-coding	7.8370910087931	7.71911536218828	7.4758947657874	7.54700048067357	7.6971896953194	7.86827674309985	7.70963941869266	7.74207963969669	0.138242632282903	0.429283181636098	0.720149601359317
Merged-chr12-116425601-1	chr12	116425501	116425701	+	668.0	f0_balb.idr	intron (NM_133762, intron 11 of 28)	RSINE1|SINE|B4	20199.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	2.66372327897577	2.61702587712177	2.83058313600211	2.83048880876561	2.20170506893823	2.35075809317618	2.24476869784799	2.40112377302985	-3.11067959267356	0.000708565508471732	0.010216652200573
Merged-chr14-9393587-4	chr14	9393500	9393700	+	996.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-490495.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	4.98501468536363	5.25747724264459	5.56563208609107	5.39370173935801	5.09642242307697	5.55434612880007	5.14047623936096	5.40568366227609	-0.0317828263556158	0.919482473132274	0.970308092934814
Merged-chr10-59879573-4	chr10	59879492	59879692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019965)	promoter-TSS (NM_019965)	1.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	7.45039263125816	7.60731136234978	7.59167047603535	7.41697061334205	7.5435313273041	8.00177283995039	7.85075087229284	7.67996630735061	0.340360759123563	0.0652313309643314	0.271828400369425
Merged-chr14-57537862-3	chr14	57537778	57537978	+	786.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145837, intron 2 of 2)	intron (NM_145837, intron 2 of 2)	13049.0	NM_145837	239114.0	Mm.390726	NM_145837	ENSMUSG00000050222	Il17d	AI462269|IL-17D	interleukin 17D	protein-coding	2.93736242281866	2.7960312148221	3.23631516626355	3.24029372186623	3.06807599321331	3.17523184653471	3.11330935774894	3.18012569223576	0.231082670339443	0.699364188849304	0.878772573452614
Merged-chr7-128690312-4	chr7	128690196	128690396	+	805.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346517, intron 1 of 5)	intron (NM_001346517, intron 1 of 5)	1426.0	NM_001346517	101490.0	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	4.25201088484703	4.39196741204035	3.92840233275547	4.01164828730105	3.98769520147747	4.15353024656679	3.80411915314069	3.97772923123734	-0.449595519213943	0.304183899424314	0.616852016442257
Merged-chr1-13374244-6	chr1	13374098	13374298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008678)	promoter-TSS (NM_008678)	-115.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	5.72947384571216	5.29843636231135	5.77574249010425	5.4361134363996	5.24493985570463	5.53384715351956	5.50317501984972	5.52713219502059	-0.196628268608719	0.498527091493667	0.767689473029564
Merged-chr14-120478883-3	chr14	120478742	120478942	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029519, exon 1 of 2)	exon (NM_029519, exon 1 of 2)	381.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	4.39749326360385	4.50520239452368	4.68008339387129	4.43290062133874	4.20440430262955	4.48226810511534	4.4647128837344	4.90674426338417	0.0646261749559698	0.868840131498619	0.950862893339999
Merged-chr14-25481080-4	chr14	25480982	25481182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	21897.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	7.06049305396827	7.20518487309538	7.43867648383586	7.40348947542209	6.93447655100921	6.77294153697385	7.27878385698754	6.9146470821094	-0.412173478701499	0.0484096582198145	0.227142456323545
Merged-chr1-94035249-6	chr1	94035115	94035315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14722.0	NM_001310769	241159.0	Mm.214565	NM_173772	ENSMUSG00000034000	Neu4	9330166I04	sialidase 4	protein-coding	4.72539787514196	4.72572186024882	5.54101175172067	4.98957461934262	4.39948380866767	4.90398676829214	4.53140059011336	5.13755688466904	-0.530837654488808	0.192791895683534	0.492673596931864
Merged-chr10-99441210-4	chr10	99441106	99441306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167965.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	6.5749924384151	6.24986355868508	6.70476658604921	6.60650564972844	6.20785428478282	6.17144019913577	6.07568248983043	6.18700596625358	-0.571337207172721	0.0125391603996541	0.0926336168227271
Merged-chr16-28518359-1	chr16	28518259	28518459	+	1000.0	f1_balb.idr	intron (NM_010199, intron 2 of 5)	intron (NM_010199, intron 2 of 5)	46136.0	NM_001357064	14167.0	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	3.61375026951923	3.42057698997854	3.61432337440153	3.67993388610288	2.92641378911354	3.15401071671921	2.96139262645007	3.2398475541976	-2.06903142769212	0.000563258623646415	0.00849050943933252
Merged-chr11-97771611-4	chr11	97771516	97771716	+	853.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028156, exon 3 of 3)	exon (NM_028156, exon 3 of 3)	4302.0	NM_028156	72215.0	Mm.269049	NM_028156	ENSMUSG00000018543	1700001P01Rik	-	RIKEN cDNA 1700001P01 gene	protein-coding	4.20613800334284	4.31109337994202	3.9677840078251	3.92010552650917	4.23162238030562	3.92134470607576	4.14405049094904	4.28835518201575	0.141704248041003	0.737899273771039	0.896555867875472
Merged-chr12-3960046-4	chr12	3959955	3960155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008895, exon 3 of 3)	exon (NM_008895, exon 3 of 3)	5110.0	NM_001278583	18976.0	Mm.277996	NM_008895	ENSMUSG00000020660	Pomc	ACTH|BE|Beta-LPH|Clip|Gamma-LPH|Npp|Pomc-1|Pomc1|alpha-MSH|alphaMSH|beta-MSH|gamma-MSH	pro-opiomelanocortin-alpha	protein-coding	5.83931404450111	6.20960827804963	5.76705848338983	5.85276739375025	5.71774330077049	5.86603374805096	5.87948819399156	5.90539355317119	-0.145696718837294	0.569556520383156	0.80940091369722
Merged-chr10-85367104-3	chr10	85367006	85367206	+	737.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-19708.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	3.04186035597617	3.02732652352885	3.04219004419919	2.53665080312407	3.86226324404818	4.30288058359432	4.74104085436562	4.35063710252139	5.7582842258098	2.08163164365465e-15	3.59632181465277e-13
Merged-chr6-142508868-4	chr6	142508762	142508962	+	984.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302765)	promoter-TSS (NM_001302765)	-905.0	NM_001316322	16832.0	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding	5.07718338683812	5.37518576784429	5.18040633783518	5.88926511020727	5.1138671376157	4.8499768795997	5.36437718623107	5.24075255327686	-0.520986795534176	0.137859060002994	0.413018098423727
Merged-chr17-15825571-1	chr17	15825471	15825671	+	624.0	f0_c57.idr	intron (NM_178615, intron 1 of 2)	CpG	1015.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	3.52812191250572	3.79693419114988	4.12468103260238	3.67755369560145	3.50149074087219	3.23740748807778	3.45637095311929	3.78967301075823	-0.892722384325992	0.0966664110674848	0.340574096588254
Merged-chr11-20982187-4	chr11	20982125	20982325	+	947.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109099.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	4.59094846527383	4.9452938250891	4.55066732439864	4.66220282598112	4.69781930231724	4.54939062892623	4.60988463190612	4.36960059422423	-0.281750148172849	0.436729524484925	0.725278104435332
Merged-chr5-3368444-3	chr5	3368324	3368524	+	802.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	24531.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	3.33952649757559	2.82052358301764	3.44662615171746	3.49212651837478	3.42021585376025	3.33564754415129	3.27089650672575	3.2814149286769	0.0868205588758862	0.8865276910364	0.957444179369024
Merged-chr10-86883474-4	chr10	86883354	86883554	+	970.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 44 of 68)	intron (NM_138673, intron 44 of 68)	104449.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	4.72081878516992	4.86862129440743	5.39619474305148	5.11158982630582	4.42517354422103	4.77313920757746	4.73904891300102	4.83450491696309	-0.730120787106436	0.0439303701319712	0.213616601695831
Merged-chr3-9515765-2	chr3	9515665	9515865	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 2 of 8)	intron (NM_133218, intron 2 of 8)	94320.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	3.24180062801513	2.92067599839777	3.19329389587401	2.80076205390866	2.8597479587633	2.582865303779	2.63250254402705	2.97370502247513	-1.23150594687918	0.077388630999469	0.300859979568038
Merged-chr15-80042359-4	chr15	80042250	80042450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27542.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	5.62267507829465	5.80007995586819	5.42049639162194	5.80060174641591	5.66069311338303	5.87625462491455	5.858838490121	5.72263029065922	0.152756900282138	0.563461287615406	0.806342969490355
Merged-chr3-105959308-4	chr3	105959214	105959414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027432)	promoter-TSS (NM_027432)	-184.0	NM_027432	70465.0	Mm.5110	NM_027432	ENSMUSG00000000561	Wdr77	2610003I18Rik|2610312E17Rik|C79984|p44/MEP50	WD repeat domain 77	protein-coding	7.11524447998151	7.51691050907977	7.2978555585482	6.65689031910209	7.46131432200609	7.9076266280635	7.0183707671891	7.63249942000753	0.488544087438287	0.0619712832389693	0.263330784410877
Merged-chr15-99815052-4	chr15	99814924	99815124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 4 of 10)	intron (NM_001113545, intron 4 of 10)	5125.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	6.42880382308281	6.09245036338908	5.8021980956113	6.05283223794985	6.28957913883016	6.35118005751799	6.29444215637766	6.63689617266547	0.436717657577808	0.0777997318346977	0.301651234335265
Merged-chr4-47319664-4	chr4	47319543	47319743	+	986.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33579.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	5.20159748075479	5.03861667394863	4.68133050474369	4.89996496579034	4.86901618634038	4.85932021391551	5.23164025888419	4.72045220034757	-0.0630761031603128	0.853757345290394	0.944903737664624
Merged-chr3-95632452-4	chr3	95632370	95632570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019561)	TTS (NM_019561)	7490.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	5.61787492238445	5.14347598732911	6.17541818141634	5.54176877683112	5.5084791987096	5.40713576230599	5.4827002285155	5.80704889647815	-0.177490265888528	0.588228738458354	0.819637323076702
Merged-chr2-172393624-4	chr2	172393533	172393733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276423)	promoter-TSS (NM_001276423)	-161.0	NM_001080820	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	7.23714092232858	7.44774059468196	7.34450250636775	7.50975337616145	7.32354311876782	7.49056246305709	7.26673549400477	7.14152134636386	-0.116507634975675	0.53039170605726	0.786525451847713
Merged-chr3-88625005-3	chr3	88624890	88625090	+	999.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	3596.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	5.26871772733421	5.27791540534981	5.10392258858521	4.97007207075437	4.31166489960555	4.33130229919162	4.70572436610837	4.41339526990638	-1.50162896873677	3.3600089154528e-05	0.000799873159173962
Merged-chr2-174327628-7	chr2	174327534	174327734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310083)	promoter-TSS (NM_001310083)	-134.0	NM_001310083	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	5.85805923698226	5.95659825636342	5.53126998734335	5.3308528460483	5.71234889628755	5.94122365613706	5.41487569341036	5.85490415345394	0.102691368129224	0.731077693356845	0.89342225316245
Merged-chr9-121354941-3	chr9	121354847	121355047	+	795.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	-12011.0	NM_001357973	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	3.22400847702611	3.30019352815769	3.33428488757375	3.32639772429858	3.12897951141764	3.21303734960841	3.15462981220541	3.10282246328899	-0.581468512647372	0.282861967241139	0.595041976860567
Merged-chr9-64702436-2	chr9	64702336	64702536	+	963.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 23 of 24)	intron (NM_001134399, intron 23 of 24)	35320.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	3.27285738577535	3.51132736872513	3.33040010826388	3.18697210316962	3.26827187641247	3.26250731007453	2.93630957877188	3.53408516996849	-0.217762905170344	0.704477926780474	0.88127019884038
Merged-chr18-4799376-1	chr18	4799276	4799476	+	833.0	f0_balb.idr	Intergenic	MLTR14|LTR|ERV1	-13110.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	3.49370546170489	3.17087956624417	3.28897553761384	3.46078346696516	2.99132115336559	3.15428736456324	3.3299052415517	2.97454772365275	-0.94941036960123	0.100349687806891	0.347750264284648
Merged-chr13-34233169-3	chr13	34233056	34233256	+	788.8222049999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	70192.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	4.05466286803761	4.14419707338052	4.18387632224374	4.01302188650835	3.99992503641883	3.68529119735702	3.73696435887709	3.85842427400884	-0.72279828458254	0.104095295528851	0.354583472227925
Merged-chr11-86739133-4	chr11	86739034	86739234	+	871.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	18433.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	4.3619358962262	4.24885444233078	4.36263113601453	4.01809715782266	4.43583643516147	4.21626135302935	4.02354216004468	4.23150607975701	0.00635713694644809	0.987666284980792	0.995315979319888
Merged-chr4-135918988-7	chr4	135918886	135919086	+	999.4127199999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009924, exon 2 of 2)	3' UTR (NM_009924, exon 2 of 2)	-1740.0	NM_024243	71665.0	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	4.66364010529195	4.42691852798952	4.8170632209115	4.7736279428706	5.00743677246121	5.02409164147928	4.32650547644742	4.98175300642279	0.384499955753456	0.305259143585829	0.617695035856713
Merged-chr7-69985370-4	chr7	69985274	69985474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	352448.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	6.14068284271564	5.92154511704858	5.88542152723963	6.31121362752663	6.26392410101176	5.88585099158517	5.59530192475904	5.95031738881196	-0.203102682348759	0.461826817574312	0.743501704400988
Merged-chr9-61627997-3	chr9	61627879	61628079	+	853.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	255613.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	3.79266907166551	3.59771496403915	4.04921347816397	3.84985797309767	3.59385783143632	3.1614743691933	3.39818131983524	3.69259483321579	-1.10604714672907	0.0407100030352532	0.203962645600499
Merged-chr1-153532391-4	chr1	153532283	153532483	+	719.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028749, intron 4 of 11)	intron (NM_028749, intron 4 of 11)	17331.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	4.11917249522291	4.03671195811549	4.29376391704479	4.15961050430003	4.25495234234864	4.19612491744591	4.05510589060286	3.91640746033936	-0.0919915135143504	0.82316666337477	0.932185203682946
Merged-chr11-86724167-4	chr11	86724075	86724275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 8 of 31)	intron (NM_001003908, intron 8 of 31)	33392.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	6.59971214352711	6.64359679831735	6.18574211544114	6.31636097748106	6.65310794217603	6.57787105542627	6.52039651393393	6.59616594538283	0.212541539754029	0.338905295448414	0.648222175114814
Merged-chr13-95494997-3	chr13	95494893	95495093	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16338.0	NM_001081159	268686.0	Mm.291249	NM_001081159	ENSMUSG00000021679	S100z	Gm625	S100 calcium binding protein, zeta	protein-coding	3.40360675120825	3.28273643057821	3.40404606915297	2.45444375788588	5.36922879550579	5.18285904189317	5.27884538170978	5.08359241855021	9.01348489436854	5.20513538841329e-22	2.27298363074766e-19
Merged-chr2-22789812-3	chr2	22789707	22789907	+	563.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	L1MB7|LINE|L1	15480.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	3.49950850322063	3.65838143065106	3.49999393608037	3.43903337569184	3.75595630533043	3.174228942379	3.25799476251995	3.26731715898997	-0.418494488936437	0.4554386177218	0.738955495643786
Merged-chr6-50074295-4	chr6	50074185	50074385	+	974.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16B_MM|LTR|ERVK	-35956.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	5.37465111787822	5.65567467567548	5.79929349508568	5.73933157869416	5.22389926310272	5.14139944748223	5.05227971700902	5.31119583453928	-0.833963548194278	0.00396324814363048	0.0397660050205067
Merged-chr19-15990321-4	chr19	15990230	15990430	+	773.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045355, intron 2 of 2)	L1M4b|LINE|L1	5255.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	3.92367746307622	3.94224960965859	3.81981918510128	3.96566920419621	3.96242933918792	4.09549925531443	4.09272016752196	4.01874336695912	0.327953721544065	0.432767168934483	0.722611204268057
Merged-chr8-68117709-4	chr8	68117612	68117812	+	683.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143138.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	3.5167868449222	3.76272486824197	3.78706527702159	3.70039574023683	3.68922483467101	3.5706858223959	3.72202393951141	3.87850269503599	0.068959159633104	0.882540688450571	0.95575354370667
Merged-chr13-106760417-4	chr13	106760323	106760523	+	877.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	176535.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	4.18440888000703	3.74021970912916	4.31481761905106	4.50695261081277	3.87452575973666	4.11340729928571	4.55105613823299	3.98655361501521	-0.17037992828258	0.722393364013467	0.889150263279452
Merged-chr11-31851257-1	chr11	31851157	31851357	+	687.0	f0_balb.idr	Intergenic	Intergenic	-19683.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	3.19703723860941	3.07752928208653	3.14324667583907	3.27336580354207	3.15290788317898	3.07308937090438	2.67745903902729	2.75813753848397	-0.998588483941677	0.129721034634336	0.400906041293221
Merged-chr7-102065278-4	chr7	102065204	102065404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286689)	promoter-TSS (NM_001286689)	-139.0	NM_001360748	75212.0	Mm.101141	NM_029211	ENSMUSG00000070426	Rnf121	4930544L10Rik	ring finger protein 121	protein-coding	6.15874500137855	6.78477769557402	6.70880047187168	5.90634648423625	6.36183935593613	6.37787917404289	6.04248449373761	6.19642677461423	-0.268058067278559	0.350289554082819	0.657869661479181
Merged-chr4-101699072-2	chr4	101698972	101699172	+	644.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-18335.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	3.00112226717482	2.95518022255757	3.17381742067541	2.99232543055545	2.75344821647349	3.04751173274392	3.04995489922673	3.11717865283412	-0.154584435750995	0.795540854622944	0.920897975671128
Merged-chr16-55778714-3	chr16	55778608	55778808	+	847.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	43430.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	3.34327423338019	3.8524467936654	3.58259379266236	3.06415829240102	3.5952775015553	4.04240237439794	3.56776414444832	3.40572904250129	0.561855048497892	0.324675578799262	0.636207624358716
Merged-chr9-55259979-4	chr9	55259877	55260077	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	intron (NM_032002, intron 3 of 7)	23648.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	5.40804964288074	5.2592598721295	5.7102252572798	5.17736260938436	5.0308983965541	5.3698741803609	5.65859217277221	5.25491149071052	-0.0913901460348117	0.775456860875552	0.912364770740536
Merged-chr6-73240315-3	chr6	73240212	73240412	+	914.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-8193.0	NM_019879	56451.0	Mm.29845	NM_019879	ENSMUSG00000052738	Suclg1	1500000I01Rik|Sucla1	succinate-CoA ligase, GDP-forming, alpha subunit	protein-coding	3.50950983663077	3.1950144084466	3.29268209163091	3.24023742686785	4.79177076795657	4.23529606393437	4.08389112930831	4.14404200426779	3.04701187610431	3.72495185578398e-09	2.15384523267951e-07
Merged-chr14-70100087-4	chr14	70099987	70100187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360404)	promoter-TSS (NM_001360404)	-6.0	NM_021328	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	6.50892459044739	6.75372951562039	6.25348899773305	6.41893626068261	6.71556682251942	6.61827693136216	6.52537277629704	6.41968818821672	0.121568579253739	0.589357840194272	0.820464677958613
Merged-chr5-36989086-4	chr5	36988974	36989174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011716)	promoter-TSS (NM_011716)	-92.0	NM_011716	22393.0	Mm.20916	NM_011716	ENSMUSG00000039474	Wfs1	AI481085|wolframin	wolframin ER transmembrane glycoprotein	protein-coding	9.05439374929135	9.07489028081947	8.97519465659378	9.21350135580355	8.81395472490216	9.04336852372342	9.09763555286754	8.98042652041892	-0.125417042890529	0.40097423164116	0.69874516070083
Merged-chr3-108900351-4	chr3	108900248	108900448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10340.0	NM_001165965	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	6.40684179321483	6.610655166791	6.54263551083922	6.59552511264046	6.53243693222573	6.21867505529751	6.58621882498556	6.33030233383931	-0.166757517424269	0.445834000172927	0.73171921081227
Merged-chr4-133853687-3	chr4	133853592	133853792	+	867.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009097, intron 17 of 21)	intron (NM_009097, intron 17 of 21)	21039.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	3.57860998934332	3.97647669834754	3.67369857819954	3.3996534152643	2.82357698751483	3.08040763455412	3.03221526088495	3.11132514154299	-2.75729811587678	3.44229533077895e-05	0.000815371511978419
Merged-chr6-97212220-4	chr6	97212134	97212334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022992, intron 1 of 2)	intron (NM_022992, intron 1 of 2)	1442.0	NM_022992	65106.0	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	5.10687256355374	5.24334234470206	5.10772171020314	5.60460898514731	5.41651931392783	5.28431927065635	5.39208484710257	5.41541350435185	0.126471207261797	0.68097183669531	0.869036611076104
Merged-chr7-96494156-3	chr7	96494054	96494254	+	998.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-152190.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	5.1143256788834	5.05727049206304	5.60206318726016	5.53286301882648	3.5679247251879	3.9712899410919	3.88901146843125	3.75963170940838	-4.18770003824149	3.06437651408295e-15	5.16870274634858e-13
Merged-chr13-32934757-1	chr13	32934657	32934857	+	665.0	f0_c57.idr	Intergenic	MLTR25C|LTR|ERVK	-30756.0	NM_011454	20708.0	Mm.36526	NM_011454	ENSMUSG00000042842	Serpinb6b	NK13|Spi12|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6b	protein-coding	3.60907508063876	3.41843612399404	3.26579447785717	2.96934680269998	3.57778047955204	3.50789906441312	3.31744655849814	3.91797905807207	0.897487634704023	0.112306162587209	0.370462524181804
Merged-chr10-34096692-4	chr10	34096600	34096800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178908)	promoter-TSS (NM_178908)	-181.0	NM_178908	103511.0	Mm.66334	NM_178908	ENSMUSG00000049872	Fam26e	BB146404|Calhm5	family with sequence similarity 26, member E	protein-coding	6.4290847917937	6.50892908930182	6.5431085413304	6.62509913483899	6.19658537149839	6.0451256186454	6.27385963807726	6.10022631258382	-0.561740659302686	0.0105733640559836	0.0821886513203953
Merged-chr12-85347695-4	chr12	85347618	85347818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-8356.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	5.97475770883467	5.79451782224271	6.47044202181401	6.34514801056405	5.8459955589744	5.60681862017322	6.22431164965703	6.13935984037819	-0.316609882862151	0.268788958305742	0.580394011861325
Merged-chr7-25708183-1	chr7	25708083	25708283	+	1000.0	f0_c57.idr	Intergenic	Intergenic	10870.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	5.84689490458654	5.75457288485131	5.69074785900181	5.68111327220433	5.4976923862002	5.27103972441028	5.13935055696512	5.29769702665446	-0.728127166485283	0.00896424344118158	0.072946825643062
Merged-chr15-78332917-2	chr15	78332817	78333017	+	829.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	(TTTTTG)n|Simple_repeat|Simple_repeat	6927.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	3.04107367245891	2.99386728453726	3.36574190839209	2.82766948991744	3.25154363854601	2.95072808986096	3.03058854105197	3.03993056125305	0.0610727148132066	0.919987589449965	0.970406583631903
Merged-chr18-39416918-4	chr18	39416817	39417017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 6 of 7)	intron (NM_008173, intron 6 of 7)	70328.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	5.98070079136226	6.0467624078431	5.8228970821168	6.13410231642837	5.60836278654394	5.70375931240908	6.05289077040274	5.81876578838944	-0.339388871170232	0.187926389851642	0.486397310500761
Merged-chr5-115282648-4	chr5	115282548	115282748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026504, intron 1 of 6)	intron (NM_026504, intron 1 of 6)	2946.0	NM_026504	52064.0	Mm.290142	NM_026504	ENSMUSG00000041733	Coq5	1810014G04Rik|D5Ertd33e	coenzyme Q5 methyltransferase	protein-coding	7.72471444124629	8.01167078780642	7.88331152249518	8.03359005642697	7.58704072826688	7.42367805760078	7.27737038688799	7.47460532035926	-0.623225851228069	0.000496045714099116	0.00766717431333261
Merged-chr2-12160737-2	chr2	12160637	12160837	+	931.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001309, intron 23 of 29)	intron (NM_001001309, intron 23 of 29)	-140509.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	3.08708015129483	2.98961840587024	3.08744618172274	2.8578627765747	3.30323432990925	3.64941929605851	3.41769170744174	3.26971631538426	1.59922376221237	0.00373264011559289	0.0379334081650181
Merged-chr9-99165030-4	chr9	99164932	99165132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24821.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	5.39549460963093	4.94402603435265	5.42498202300979	5.61384343330988	5.5340271502441	5.41901329695769	5.36952305350064	5.44908694300059	0.1161608312526	0.703539068466362	0.880741625705568
Merged-chr7-117470648-4	chr7	117470553	117470753	+	987.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175645, intron 1 of 11)	intron (NM_175645, intron 1 of 11)	89674.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	5.92543030253519	5.5663350558171	5.82178988504671	5.7728491161664	5.37336276263408	5.32522884077462	5.11959968408298	5.5776949662809	-0.712132102953231	0.0114570711370042	0.0869523463980016
Merged-chr15-5106540-2	chr15	5106440	5106640	+	975.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163138, intron 2 of 3)	B2_Mm2|SINE|B2	1993.0	NM_001163138	239319.0	Mm.31252	NM_001163138	ENSMUSG00000041849	Card6	D730008L15	caspase recruitment domain family, member 6	protein-coding	3.63591159038942	3.40589881586169	3.47468544430113	3.69409912965569	3.48376399271989	3.58931230315922	3.62143409008849	3.582742188155	0.000640158208464894	0.998955966192716	0.999515665343703
Merged-chr13-110560767-4	chr13	110560670	110560870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	165726.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	6.44892673128999	6.56178207975808	6.93531950624935	6.78755597358097	6.70918466072589	6.60933649392846	6.65992248069219	6.56511669340184	-0.0883790971270323	0.682718259309587	0.86997749614016
Merged-chr7-28215683-2	chr7	28215582	28215782	+	724.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	35366.0	NM_001271370	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	3.08980954812411	3.43790155635517	3.15162052395174	2.59674805197443	3.12369567277198	3.32536262754271	3.13947634636494	3.14992270786852	0.305747767193623	0.638448960592663	0.847153284197798
Merged-chr14-14003000-4	chr14	14002892	14003092	+	859.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9499.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	4.07968454262447	3.87600926507286	4.21301735866811	4.36447886883056	3.96518499790641	3.99993185783016	4.06270224535801	3.9811442051251	-0.416056869516781	0.333537292141599	0.64427395363095
Merged-chr14-50825568-2	chr14	50825466	50825666	+	891.5	f0_balb.idr|f1_balb.idr	intron (NM_009351, intron 51 of 54)	intron (NM_009351, intron 51 of 54)	17650.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	4.5340519721118	4.48539357590705	4.43273800552347	4.32123873617973	3.25098803755848	3.53243899306887	3.32194548823934	3.85834206794934	-2.95204089861699	1.25503436067651e-07	5.27655586288207e-06
Merged-chr2-32424149-4	chr2	32424039	32424239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290558)	promoter-TSS (NM_001290558)	-73.0	NM_001290558	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	6.27703743449492	6.30965742140314	5.98104290303628	6.311815536487	6.40006223718286	6.29405000357429	6.64520050979202	6.29241845215545	0.271788231449828	0.239996748356358	0.550434301635482
Merged-chr17-35867710-4	chr17	35867618	35867818	+	809.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175242, exon 1 of 3)	exon (NM_175242, exon 1 of 3)	1103.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	4.35667197089095	4.51743308398353	4.16890594596061	3.99350135412936	4.32386092476285	4.76563423669583	4.53791249393648	4.26389644171421	0.514767571822515	0.208171219250065	0.51237661105157
Merged-chr1-171815958-4	chr1	171815851	171816051	+	919.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-23746.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	5.14045787492283	5.18898884579503	4.86328228393886	5.02731120390769	4.99041722438029	5.21725052110341	5.20558295134077	4.78017216599356	-0.00744448598895675	0.981413134529873	0.993361854006063
Merged-chr8-35683721-3	chr8	35683626	35683826	+	979.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-94706.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	3.82070316282578	3.42286804157058	4.3459913238554	4.32094258506062	3.43228352068706	3.46303996464249	3.59023610194484	3.60215677437789	-1.55111577306216	0.00494803444730528	0.0471923012092647
Merged-chr8-123027909-4	chr8	123027805	123028005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	14379.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	6.97159610579287	7.08265618585013	6.58669035670044	6.25239642956999	6.66327871010172	6.76351945846756	6.56897414822532	6.40930889880758	-0.209428161934495	0.420934222112282	0.713593114282418
Merged-chr2-33918533-2	chr2	33918433	33918633	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-30587.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	3.45708496673635	3.482702668363	3.2674363443927	3.07141068934197	3.99309223983566	3.57517746103769	3.70749123296948	3.76895249640868	1.50797763680595	0.00327139509846069	0.0341479149015008
Merged-chr16-19983115-4	chr16	19983010	19983210	+	952.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183390)	promoter-TSS (NM_183390)	-61.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	4.97545790381687	4.51895231580153	4.83688866366788	5.24205012864111	4.59315101096432	4.93569727969383	4.91885833849795	4.83366985062443	-0.235304106876714	0.520487536849962	0.780787600139836
Merged-chr1-92934538-5	chr1	92934486	92934686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015525, exon 2 of 2)	non-coding (NR_015525, exon 2 of 2)	178.0	NM_011796	23830.0	Mm.294315	NM_011796	ENSMUSG00000026270	Capn10	AW049679|Capn8|mKIAA1845	calpain 10	protein-coding	7.56767309609143	7.74659740570644	7.80996422444714	7.68201616803921	7.5959158253766	8.02379765584841	7.89422380563374	7.81222143854119	0.169922654328733	0.341187823440896	0.650275314861081
Merged-chr1-153952153-1	chr1	153952053	153952253	+	955.0	f0_balb.idr	Intergenic	MLTR14|LTR|ERV1	52224.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	3.59776494912477	3.12370449508526	3.22921931532031	3.68292110431447	3.00316745039101	3.21201577105743	3.2766064334516	3.34414724481151	-0.827029971603573	0.158299503803962	0.445153637183645
Merged-chr7-98716209-4	chr7	98716102	98716302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028410, exon 5 of 5)	exon (NM_028410, exon 5 of 5)	12955.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	5.71201751517799	5.96804903608836	5.88161679855135	5.50838706263731	6.22232722804932	5.43650958527445	5.91704345904309	5.83153895517909	0.205628055748552	0.483021892470918	0.757524683474805
Merged-chr9-70657262-4	chr9	70657191	70657391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172772)	promoter-TSS (NM_172772)	-117.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	8.26759585105366	8.6975373427542	8.27470558498416	8.26545918783925	8.51485080040581	8.52511879525049	8.39258678032023	8.13626030073513	0.0157934445940019	0.931475952612524	0.975308419949524
Merged-chr18-23954715-4	chr18	23954629	23954829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027007)	promoter-TSS (NM_027007)	41.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	7.5812529072123	7.39963367330575	7.75793772455939	7.37053999295589	7.34508325119993	7.3363865171768	7.61171560645266	7.07940562003058	-0.229292111215878	0.255746996471741	0.56736522248136
Merged-chr7-142392032-4	chr7	142391931	142392131	+	837.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5a|LINE|L1	-4161.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	3.92819747764463	3.34808210455348	3.92876484569881	4.11953616699487	4.08580797672037	4.05190195765718	4.14255249605661	4.28044789999506	0.714462359478356	0.149097294749739	0.431143463050646
Merged-chr3-69923214-4	chr3	69923075	69923275	+	955.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-63281.0	NM_001286959	66183.0	Mm.45481	NM_133675	ENSMUSG00000043461	Sptssb	1110032A04Rik|ADMP|Sssptb	serine palmitoyltransferase, small subunit B	protein-coding	4.4363448947224	4.41883702592145	4.22569667125895	4.31246966839815	4.91940248834956	5.25381986349782	5.36855142969207	5.0786929874173	1.67087556591949	1.37245215807943e-06	4.6674520859979e-05
Merged-chr4-9074584-4	chr4	9074471	9074671	+	980.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-194722.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	5.18399363963279	5.44088601110928	5.57547282509598	5.40470047712135	5.24301766719153	5.11216458493952	5.31206332909265	4.88940480207647	-0.464002332353316	0.125856687307609	0.394016236183509
Merged-chr11-26637258-4	chr11	26637117	26637317	+	977.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-43297.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	3.99536470725258	4.1368690681133	4.48833736000786	4.2200041254315	4.74295536838505	4.44261632416321	4.62039229811067	4.90068986626937	1.06446046936672	0.00569235830458958	0.0523010677374961
Merged-chr19-46515551-3	chr19	46515463	46515663	+	936.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_053100, exon 6 of 6)	exon (NM_053100, exon 6 of 6)	13915.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	3.95897189886545	3.62407526580025	4.23606945675998	3.77103736254389	3.93996658700869	3.39322975634715	3.64768807886936	3.41663466488621	-0.83833885666719	0.120051731871696	0.383578919217719
Merged-chr15-53141195-4	chr15	53141111	53141311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	204972.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	5.94437220604571	6.10056503008324	6.00819713337159	5.17133260686041	5.94214090874044	5.98503011199919	5.70663436858283	5.57009514611519	-0.0448379594351594	0.8887153190072	0.958307342699796
Merged-chr5-114128267-4	chr5	114128154	114128354	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359940)	promoter-TSS (NM_001359940)	-36.0	NM_001359941	231642.0	Mm.332593	NM_175016	ENSMUSG00000044339	Alkbh2	9530023G02|AU016977|Abh2|mABH2	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase	protein-coding	5.45766188479794	5.77701262502569	4.83944111420143	5.22979518371275	5.66084242816108	5.89310996290741	5.61818685421743	5.78454467556486	0.631146018340263	0.0466650300862051	0.22210432474129
Merged-chr11-98814085-4	chr11	98813985	98814185	+	807.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138660, intron 3 of 13)	HAL1M8|LINE|L1	-3996.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	3.88923593940411	4.26604592776307	3.94125044457815	4.24560900618273	3.84629692809955	3.64790433854852	4.06638346164326	4.12612103658058	-0.46450713628867	0.308398822569521	0.620793493346942
Merged-chr8-18595037-4	chr8	18594938	18595138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173189)	promoter-TSS (NM_173189)	-93.0	NM_173189	244329.0	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge	microcephaly, primary autosomal recessive 1	protein-coding	6.70891179197419	6.75482903092233	7.21008073897238	6.71107084200773	6.28145040549551	6.62850916443182	6.66117623418611	6.35296709858583	-0.535598319741485	0.0226229350855613	0.138924768212376
Merged-chr17-17402433-4	chr17	17402321	17402521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025681)	promoter-TSS (NM_025681)	-265.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	6.58938300979173	6.79375302456067	6.80922170922079	6.65454456909951	6.49250804065657	6.78251369698471	6.58821095573749	6.28127395657263	-0.242549464065367	0.264631407917562	0.576566406596513
Merged-chr1-74588214-4	chr1	74588103	74588303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310668)	promoter-TSS (NM_001310668)	-86.0	NM_001305652	66821.0	Mm.358700	NM_025784	ENSMUSG00000026172	Bcs1l	9130022O19Rik	BCS1-like (yeast)	protein-coding	7.82448436731047	8.09018818771012	7.9988631179461	8.15319564831789	7.9409943315695	7.89865124520994	8.19272674919313	7.59210707063418	-0.132988136796117	0.482235441080542	0.757125385139225
Merged-chr7-110629194-2	chr7	110629094	110629294	+	668.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009627, exon 4 of 4)	3' UTR (NM_009627, exon 4 of 4)	1537.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	2.77299854308532	2.62174641924825	2.77337333480978	2.4646658523414	2.76885376133903	2.54219800548301	2.43314637277387	2.82944008482667	-0.00950999689702967	0.989104996779355	0.995648451168357
Merged-chr5-121451887-4	chr5	121451804	121452004	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029912)	promoter-TSS (NM_029912)	570.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	4.28845541939159	4.25194687593272	4.41071365047334	3.90871316284912	4.13100571522743	4.01829440188068	3.87936262072132	4.58700680138655	-0.0873795289504782	0.846410015437422	0.941927981530162
Merged-chr5-135794724-3	chr5	135794673	135794873	+	815.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16124.0	NM_008617	17448.0	Mm.297096	NM_008617	ENSMUSG00000019179	Mdh2	MDH|Mdh-2|Mor-1|Mor1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding	2.87465410665498	3.32145991219544	3.55865945133193	2.86378904191285	3.56042460521355	3.46486050655119	3.33495213171742	3.50705647743156	1.00921349536088	0.0981867011191846	0.343515910492133
Merged-chr1-58393042-4	chr1	58392951	58393151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025824)	promoter-TSS (NM_025824)	-85.0	NM_025824	66882.0	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	7.08028113285304	7.13829143071359	7.15388786041074	7.14934632936279	7.27670541374519	7.67648913729898	7.24026809578847	7.5721948852519	0.426906222992804	0.0265970189759617	0.15477021040631
Merged-chr7-88278990-4	chr7	88278880	88279080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 1 of 6)	intron (NM_009982, intron 1 of 6)	895.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	4.95042172254662	5.35825772883888	4.71619207688389	4.72038400850655	4.84428515037667	5.25975615622015	5.18363770809081	5.01754547224157	0.233150410705339	0.506667146306337	0.772382009914734
Merged-chr6-149307965-3	chr6	149307854	149308054	+	801.416687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_LTR|LTR|ERV1	-1460.0	NM_001289661	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	3.49390743021838	3.46184222526846	3.43548977912515	2.76924964668441	3.81701809408385	3.92517835374866	3.64072192984753	3.54874026995284	1.36837934797962	0.0208083398870012	0.131549589201249
Merged-chr13-51736561-4	chr13	51736504	51736704	+	916.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281880, intron 2 of 16)	intron (NM_001281880, intron 2 of 16)	57143.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	4.85948560470771	4.12781765655008	5.17153414471565	4.9359448971287	4.4288678953456	4.53212518458894	4.87108530771378	5.19505908426209	-0.072593461478896	0.868218696956711	0.950650524261722
Merged-chr8-40272435-1	chr8	40272335	40272535	+	821.5	f0_balb.idr	Intergenic	Intergenic	14518.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	3.56131933746687	3.32701492271472	3.7548535946573	3.83876488893441	3.13312004156807	3.8300695462696	3.12582265830798	3.06060520366489	-1.05122040963011	0.0900618854888963	0.327685679456839
Merged-chr6-51611840-4	chr6	51611725	51611925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66532.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	5.86053817082665	5.81371722987945	5.76219230935234	6.19913851298024	5.97816446243336	6.1511062354032	6.2533284211901	5.9274543137637	0.217865946979029	0.401949339488938	0.699485405004232
Merged-chr5-64317424-4	chr5	64317342	64317542	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 13 of 18)	intron (NM_001289514, intron 13 of 18)	87085.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.56935939229449	4.94080430447257	4.76312408644705	4.97603011077648	4.56111817019563	4.3686427013273	4.58985297246208	4.48112351334809	-0.709938557056911	0.0480387055299304	0.226132333900861
Merged-chr12-31954425-4	chr12	31954333	31954533	+	951.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4188.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	4.24384185982699	4.4348014751829	4.59169023621167	4.41997551994415	5.36533433945175	5.07511240391742	5.1525397108205	4.9324111341005	1.47505227371038	1.49949157923543e-05	0.000395597891469232
Merged-chr8-4140259-4	chr8	4140145	4140345	+	864.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5509.0	NM_027343	70192.0	Mm.390006	NM_027343	ENSMUSG00000079168	Cd209g	2310066I10Rik|AI481039|SIGNR7	CD209g antigen	protein-coding	3.95227644077066	3.75248119451243	3.95283364940707	3.74393283699806	4.49176341623893	4.62933694350424	4.61273567957415	4.41736368721901	1.74602441761295	9.39883760173322e-06	0.000260412558059077
Merged-chr17-45620028-4	chr17	45619928	45620128	+	820.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17926.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	4.98691446520999	4.45737731319963	4.73468542963648	4.45186343422063	4.34697197694978	4.54807930625383	4.44126508792665	4.36870091523601	-0.536955948849614	0.162034219364924	0.45110625807392
Merged-chr8-105855485-2	chr8	105855385	105855585	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021513, exon 1 of 1)	exon (NM_021513, exon 1 of 1)	382.0	NM_021513	59016.0	Mm.286598	NM_021513	ENSMUSG00000036442	Thap11	2810036E22Rik|AB041579|CTG-B43a|CTG-B45d|Ronin	THAP domain containing 11	protein-coding	3.46813784006976	3.38530551274907	3.1686590815979	3.20983047197391	3.3755604481626	3.52920499007704	3.40050141831844	3.66442552931991	0.645298907260679	0.211215182033615	0.515787529171727
Merged-chr13-110431578-1	chr13	110431478	110431678	+	587.0	f0_balb.idr	Intergenic	Intergenic	36534.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	3.19267106409041	3.32764886533886	3.36280236720651	3.33623964800515	3.30771499702029	3.17535465023551	3.44959047680638	2.9251046398737	-0.27972596311309	0.622259911735489	0.838289012366954
Merged-chr10-53344098-4	chr10	53344013	53344213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001141927, exon 3 of 3)	3' UTR (NM_001141927, exon 3 of 3)	6427.0	NM_001141927	18821.0	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	5.71889437832739	5.85511607323298	5.48584319800092	6.38866674063387	6.27596531934975	5.60245300408999	6.27623297018837	6.06457850547091	0.247980206987834	0.437376564698612	0.725658989975083
Merged-chr1-134244381-3	chr1	134244297	134244497	+	702.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8940.0	NM_001008533	11539.0	Mm.298908	NM_009629	ENSMUSG00000042429	Adora1	A1-AR|A1AR|A1R|AA1R|AI848715|BB176431|Ri	adenosine A1 receptor	protein-coding	3.31986701656795	3.55442411785695	3.25505711764633	3.38469548940954	3.62032282126809	3.67000895500285	3.77775019689866	3.55115591317969	0.879348693885035	0.0750549013875049	0.295650860223179
Merged-chr10-88683627-4	chr10	88683493	88683693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011461)	promoter-TSS (NM_011461)	-570.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	4.77280485677124	5.13878028269423	5.27540505208152	5.33835905761367	5.28453509369968	5.35669941228219	5.21946058251322	5.21106799214856	0.191361513422966	0.539366464742309	0.79215032691412
Merged-chr11-75935928-3	chr11	75935823	75936023	+	914.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10032.0	NM_001291159	380714.0	Mm.425697	NM_029548	ENSMUSG00000020847	Rph3al	Gm1753|Noc2	rabphilin 3A-like (without C2 domains)	protein-coding	3.57488074529594	3.59560070909164	3.74022408975276	4.236694457307	3.21412112285222	3.63357735072473	3.56176251978305	4.09512583271779	-0.466453615286735	0.418763547789998	0.712054666228573
Merged-chr7-3715455-4	chr7	3715361	3715561	+	878.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357394, intron 9 of 14)	intron (NM_001357394, intron 9 of 14)	4921.0	NM_001357394	18733.0	Mm.326531	NM_011095	ENSMUSG00000058818	Pirb	Gp91|LIR-3|Lilrb3|PIR-B	paired Ig-like receptor B	protein-coding	4.87118567797457	4.27455753484162	4.22296371388428	4.22526429523987	4.89003753917284	4.97650612310846	4.39818578617072	4.50289832053634	0.653644937335467	0.112026694254964	0.369934960351385
Merged-chr8-84071942-3	chr8	84071840	84072040	+	693.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	5104.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	4.03441155879229	3.65903347592459	3.70655010936944	3.46239276045706	3.70812235946591	3.52434169802319	3.7432724216103	4.03241176364598	0.130361868154498	0.793654418829271	0.920154586076439
Merged-chr2-84523284-1	chr2	84523184	84523384	+	857.0	f0_balb.idr	Intergenic	Intergenic	-16411.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	3.85573916704711	3.28828624367275	3.76826136703126	3.73693162387675	3.46978082927135	3.45211272084214	3.55650169480566	3.20289712086295	-0.824630793855404	0.125762921107198	0.393826615111713
Merged-chr2-153338550-3	chr2	153338469	153338669	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7241.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	3.57247934460851	3.38753145773282	3.96998007340718	3.8248082344272	3.06371766482813	3.26175421639247	3.33492594041759	3.34531971145373	-1.63234060773459	0.00386895365843242	0.0390506735492711
Merged-chr18-34861138-10	chr18	34861005	34861205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007913)	promoter-TSS (NM_007913)	-102.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	8.17616670935874	8.67048475168325	8.12603946474707	7.8462410296719	8.50292564996083	8.98196825344196	8.54791830309234	8.65246145701208	0.562367877180612	0.00921263268102149	0.0744235593692462
Merged-chr2-23156489-4	chr2	23156368	23156568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025979)	promoter-TSS (NM_025979)	-37.0	NM_013771	27377.0	Mm.23335	NM_013771	ENSMUSG00000026775	Yme1l1	FtsH1|Ftsh	YME1-like 1 (S. cerevisiae)	protein-coding	6.68421396271123	6.598414106067	6.26633151657998	6.74912187998414	7.24990600605935	7.39653582592393	7.14342169856158	6.53265972748306	0.735318941470972	0.00332823153925372	0.0346345311012486
Merged-chr3-83823962-4	chr3	83823862	83824062	+	884.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	17646.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	4.5285713026024	4.29960406058701	4.41022890705633	4.40341560712208	4.4970106555022	4.25716362140207	4.26014456581804	4.40744060129755	-0.101422927373529	0.787537395583701	0.917614043121548
Merged-chr11-62559116-4	chr11	62559011	62559211	+	963.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7380.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	5.91451045947062	4.98217648037193	6.06393557592435	6.15292059587593	5.2274179119131	5.01836711320036	4.76229771834621	5.31755754109934	-1.31593062686643	0.00043804647600977	0.00692420833131233
Merged-chr10-81432361-3	chr10	81432267	81432467	+	863.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5194.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	3.28956874388111	3.46823561228742	3.35050709922097	2.90644861883046	3.51272878725638	3.40508610196742	3.69250175432655	3.51488190507031	0.960199269072156	0.0823122751524566	0.311461667804833
Merged-chr16-91899693-4	chr16	91899510	91899710	+	908.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010587, exon 33 of 39)	exon (NM_010587, exon 33 of 39)	32020.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	3.46840352017801	3.56520446821859	3.3543871327755	3.73541232787692	3.56491283103075	3.19966301449768	3.34268316729565	3.57188236381478	-0.381468953977504	0.475046511330756	0.752066636719659
Merged-chr13-41263798-4	chr13	41263710	41263910	+	975.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135577, intron 1 of 1)	intron (NM_001135577, intron 1 of 1)	13966.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	4.60202730027202	4.24151715887305	5.00734952095572	5.15492924833311	4.76447380002244	5.01184107454305	4.62387524378616	4.93934905991113	0.055262624450149	0.890543719610081	0.959043973343308
Merged-chr5-5214739-4	chr5	5214649	5214849	+	881.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 4 of 14)	intron (NM_011074, intron 4 of 14)	51319.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	3.89848028222134	4.20831689065563	4.12201179440946	3.8436364794818	4.72732007157498	4.89486316891828	4.29341532641249	4.35409499928212	1.37638262107501	0.000847189206740938	0.0117823387216205
Merged-chr3-103169970-4	chr3	103169879	103170079	+	915.462524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177857)	TTS (NM_177857)	-1676.0	NM_026602	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	4.40463882679671	4.38331698380987	4.14972491917447	4.65617148906059	4.91618859821395	5.00560825244575	4.67359618613054	4.61640154847677	0.822075496011426	0.0314591820196626	0.172820337807946
Merged-chr8-126971111-4	chr8	126971003	126971203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172762)	promoter-TSS (NM_172762)	-24.0	NM_172762	52202.0	Mm.28199	NM_172762	ENSMUSG00000033931	Rbm34	4930547K05Rik|6330444B11|D8Ertd233e	RNA binding motif protein 34	protein-coding	7.53533973080216	7.75883034714481	7.41323193476205	7.60793769151238	7.54564627420154	7.55009475897255	7.64396687572936	7.19091656629302	-0.12317065667567	0.516109710482163	0.778006346996534
Merged-chr10-117675809-3	chr10	117675708	117675908	+	856.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027468, intron 6 of 8)	intron (NM_027468, intron 6 of 8)	34950.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	3.33440856525641	3.32763156669935	3.27277199032898	3.51646422206892	3.49585077837793	3.77325935569909	3.38145735220404	3.50309293851589	0.553025495318041	0.284622708057595	0.5964138879162
Merged-chr6-127163017-4	chr6	127162910	127163110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040275, intron 1 of 1)	intron (NR_040275, intron 1 of 1)	-11962.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	7.59362715378647	7.70130287998117	7.42844804613173	7.59424464763743	7.74659928987245	7.34334541758261	7.70405905102436	7.29869775025557	-0.0499225468729924	0.796366003228401	0.921103730429807
Merged-chr19-11601481-1	chr19	11601381	11601581	+	909.0	f1_c57bl6.idr	intron (NM_026835, intron 3 of 6)	intron (NM_026835, intron 3 of 6)	3323.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	2.2744227415918	2.42929434254592	2.43070440141821	2.2677091698348	2.72956064745749	2.80744060545303	2.74530468939919	2.75538939197864	2.27152360764763	0.0010432862803562	0.0139115912606733
Merged-chr1-21036046-4	chr1	21035949	21036149	+	988.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177409, intron 2 of 10)	intron (NM_177409, intron 2 of 10)	43176.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	6.44761447361619	5.99833970375133	6.60692094217976	6.89143526456603	5.40228799856647	5.12717259791167	5.71995304355481	5.60527226357654	-1.66842055759133	4.25277244225537e-08	1.97977821888355e-06
Merged-chr1-149841071-4	chr1	149841001	149841201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 16 of 17)	intron (NM_008869, intron 16 of 17)	81338.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	7.11316782525	7.2944920253919	7.12629194276608	7.18320312204529	7.42858874463807	7.23045427680457	7.25591934201411	7.19032050919889	0.139352547656152	0.444959746191427	0.73115209509395
Merged-chr11-95336836-4	chr11	95336762	95336962	+	996.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172543)	promoter-TSS (NM_172543)	-156.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	5.11124243576706	5.16133798038653	4.83291715618622	4.68559009780837	5.02988739259508	5.22046114181703	5.11755965066589	4.79020852402209	0.191264358263418	0.569798833074271	0.809561615168898
Merged-chr2-83622005-4	chr2	83621868	83622068	+	738.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-22610.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	3.41016055092653	3.27801276959245	3.35797711718875	3.15655989461888	3.38672516858503	3.52625704518654	2.90702277389144	2.98620514232145	-0.256130350160951	0.670667393530442	0.864213664580603
Merged-chr19-23758971-4	chr19	23758865	23759065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177034)	promoter-TSS (NM_177034)	89.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	5.80445978145126	5.89706346312489	6.1011513699337	5.95965719955132	5.3509298686848	5.83023147946408	5.7277030569296	5.67639992363545	-0.494254164843585	0.0628129807342625	0.265622929876668
Merged-chr5-103659796-2	chr5	103659696	103659896	+	872.025024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4064.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	3.03927004420081	3.71877472678972	3.18213593274368	3.24742031985637	4.0323513726811	3.36244186943267	3.41565025618992	3.36979302951067	0.851166452240742	0.162279464941937	0.451435886782433
Merged-chr2-120137617-4	chr2	120137486	120137686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 1 of 5)	intron (NM_133838, intron 1 of 5)	16989.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	5.86828711574423	5.81971344038476	5.4541511824548	5.69793740154617	5.72190567882841	5.63174768072377	5.81722021515576	5.79703011185729	0.0405209902910038	0.876199017675806	0.953442007069344
Merged-chr12-85510680-3	chr12	85510577	85510777	+	849.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A2|LTR|ERVL	36787.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	4.06226217448539	3.96436512984918	3.47815480524367	3.4750625844718	4.12224981217452	4.00164779862087	3.70714818312994	3.87685438707665	0.494146334767179	0.320634259789903	0.632430335149585
Merged-chr8-72261246-4	chr8	72261141	72261341	+	859.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21223.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	3.98434961779134	3.83278450038987	3.87982201748011	4.0780488122632	4.17907018473323	4.2063704801364	4.10994199348319	4.29418336653369	0.621861172819689	0.13298538598655	0.406105758986762
Merged-chr15-11964258-4	chr15	11964158	11964358	+	797.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2804.0	NR_040447	73339.0	Mm.231975	NR_040447	ENSMUSG00000099349	1700047G03Rik	-	RIKEN cDNA 1700047G03 gene	ncRNA	4.01894790267516	4.37709745909951	4.16485838663298	4.14226677217332	3.50096744571713	4.42434187655535	4.05223952254426	4.33330883672822	-0.15575139221242	0.749675865528544	0.901415182376325
Merged-chr5-114667656-4	chr5	114667504	114667704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9183.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	7.15413428273317	7.14115574644662	6.97100706404441	6.77807814585352	7.52628250548618	7.22524956794646	7.31899489317029	7.20621192472447	0.442255196962285	0.0276465551276453	0.158637798934018
Merged-chr5-139384776-4	chr5	139384669	139384869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	4130.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	7.08629341622636	7.11187744466687	7.57603432965544	7.56173785226303	6.90205128236251	7.02461529143794	7.25341803478938	7.23176877180372	-0.346906072542186	0.109665095269794	0.365647920939134
Merged-chr7-126928866-4	chr7	126928754	126928954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172747)	promoter-TSS (NM_172747)	-25.0	NM_172747	233877.0	Mm.245897	NM_172747	ENSMUSG00000030685	Kctd13	1500003N18Rik|AV259508|PDIP1alpha|Pdip1|Poldip1	potassium channel tetramerisation domain containing 13	protein-coding	7.32270828644586	7.38288505287665	6.77352819119887	6.8921212500772	7.19767017439711	7.18778677159339	7.17392788225444	7.04326642239889	0.0533090632820829	0.806386031728598	0.925408958667777
Merged-chr13-80884786-4	chr13	80884707	80884907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042591, intron 1 of 7)	intron (NM_001042591, intron 1 of 7)	-1288.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	6.17420114143411	5.67503010585661	5.86676678105226	5.98691200201917	5.61834210748927	5.84233218668737	5.83689393471095	6.09580906916562	-0.13959925901711	0.600962217703324	0.827051492743764
Merged-chr7-81213226-4	chr7	81213112	81213312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008803)	promoter-TSS (NM_008803)	-592.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	7.39731455242607	7.57893216163721	7.40866808438036	7.64504820302502	7.50228770053445	7.62547977810655	7.64921546060053	7.60699188018512	0.0952531742674461	0.584695306303469	0.817725463637045
Merged-chr2-35256344-4	chr2	35256257	35256457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001206367)	promoter-TSS (NM_001206367)	-2.0	NM_001206367	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	6.61108142897218	6.52941025522101	6.49856641503072	6.77291971376312	6.58086367672169	6.51297028823438	6.66797610896625	6.57611140846124	-0.0491786574533997	0.81421716487431	0.928322338276286
Merged-chr2-130750704-4	chr2	130750604	130750804	+	952.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029432, intron 20 of 36)	RMER10A|LTR|ERVL	-53185.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	4.25960960513549	3.81899767988709	4.34530602482357	4.04609548639878	4.49392523192899	4.03331340619525	4.64590257326135	4.01708972570179	0.507487181162807	0.255125959413327	0.56669092417167
Merged-chr1-180922535-4	chr1	180922428	180922628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12494.0	NM_010094	13590.0	Mm.378911	NM_010094	ENSMUSG00000038793	Lefty1	AI450052|Ebaf|Leftb|Stra3|Tgfb4|lefty|lefty-1	left right determination factor 1	protein-coding	5.81446695699173	5.58599176050444	5.69069878708874	5.91013497803417	5.69600761361818	5.99015485087274	6.02198729061969	5.83488306133957	0.189431780452797	0.465700239227762	0.746141388556091
Merged-chr14-104522268-3	chr14	104522164	104522364	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026047, intron 1 of 5)	CpG	402.0	NM_026047	72486.0	Mm.291811	NM_026047	ENSMUSG00000022120	Rnf219	2610206B13Rik|2810449K13Rik|AI451544	ring finger protein 219	protein-coding	5.35680374902567	5.00179190250001	5.58166580191724	4.92836325769263	4.91854455314601	4.96161663962156	4.99089665199751	5.32641047296369	-0.325614318053273	0.342763072965476	0.6516462545027
Merged-chr2-45099234-4	chr2	45099163	45099363	+	834.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	11014.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	4.50649768610857	4.94681538161155	4.08061474370387	3.72825232616095	4.20401613818219	4.44327096897117	3.65903248905251	3.60119190618355	-0.937279050052309	0.264923982799411	0.576781318605745
Merged-chr5-23616144-3	chr5	23616039	23616239	+	790.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152854, intron 2 of 14)	intron (NR_152854, intron 2 of 14)	432.0	NM_001359175	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	3.24398342031986	3.07941054557182	3.18790258085521	3.13999717342434	3.35601412041234	3.04086229523981	3.0567790750119	3.29665973141834	0.155858359821154	0.779674486375654	0.914094261477771
Merged-chr3-18625690-3	chr3	18625585	18625785	+	952.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-145208.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	4.32835499412771	4.187359259298	4.60377315138672	4.16762175021277	4.07696595622712	4.26770300515374	4.21970270969494	4.70194497768303	0.022854543467786	0.956549177126908	0.984701693259229
Merged-chr4-84065342-1	chr4	84065242	84065442	+	772.0	f0_balb.idr	Intergenic	Intergenic	-20463.0	NR_130998	78238.0	Mm.243903	NR_130998	ENSMUSG00000085217	6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA	3.43980110523472	3.32131150989577	3.03138305202335	3.18956001726047	2.47778015597297	2.71955754947165	2.68372344410408	2.90369568587784	-2.88780912691894	0.000229153339166753	0.00407060282718999
Merged-chr12-110705969-4	chr12	110705868	110706068	+	968.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-9573.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	5.0762075576676	4.68689801438387	5.17195092749897	5.08609344018145	5.02348015019493	4.96089478700876	5.17622152573338	5.22780309347891	0.154339761224722	0.629877717101424	0.842492220865196
Merged-chr19-5085611-1	chr19	5085511	5085711	+	599.0	f0_balb.idr	promoter-TSS (NM_001001885)	promoter-TSS (NM_001001885)	-134.0	NM_001001885	381199.0	Mm.329663	NM_001001885	ENSMUSG00000061451	Tmem151a	AW125688|Gm961|Tmem151	transmembrane protein 151A	protein-coding	3.46249630754892	3.33675348276723	3.29540562342336	3.48880082492152	3.55858752934747	3.21187666490246	3.39648990043473	3.40770411924723	0.011349518911044	0.982637320155843	0.993821106189047
Merged-chr3-149103640-4	chr3	149103543	149103743	+	894.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-149008.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	5.06383945049231	4.90369546899192	5.12170027020339	5.20310079476597	3.76205947019989	4.05769435931334	4.59251346693656	4.61133469723135	-1.72339077337117	7.67243927384019e-05	0.00161908258248642
Merged-chr19-10171970-4	chr19	10171874	10172074	+	805.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-10914.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	3.78301461571799	3.85717860065404	3.83539601169835	3.67438721518766	3.83129240337384	3.67021545063791	4.04846473928758	4.06450856150721	0.37516503691889	0.402719355507242	0.700189859986795
Merged-chr10-14103316-4	chr10	14103192	14103392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010437, intron 2 of 8)	intron (NM_010437, intron 2 of 8)	136913.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	6.55039622978571	6.78319682328316	6.79712257395292	6.98862036584732	6.63476661900406	6.56754899506028	7.07952718126422	6.67556398739371	-0.0658664670445798	0.771293722600203	0.910379161490028
Merged-chr2-91132267-4	chr2	91132164	91132364	+	977.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008653, intron 22 of 31)	intron (NM_008653, intron 22 of 31)	14120.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	4.88811258770957	5.10938455649766	4.74441456988868	4.47790629183133	4.78270981746168	5.12602664520708	4.47184204571832	4.44183936157809	-0.170925718140222	0.66326505511197	0.860454250420379
Merged-chr19-4294579-4	chr19	4294485	4294685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 2 of 20)	intron (NM_001290818, intron 2 of 20)	-11448.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	7.74122667765746	7.84240715953011	7.93411437420329	7.64889449497281	7.83664573402067	7.63521686060745	7.68079315236506	7.63788058094631	-0.109735788876415	0.523671195546128	0.782605836011569
Merged-chr2-154594084-4	chr2	154593989	154594189	+	844.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021534, intron 2 of 3)	intron (NM_021534, intron 2 of 3)	9584.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	4.02111434111943	3.46164185864863	4.19905621589427	3.92235272341495	3.910157242354	3.82108254622006	4.09477292841448	4.38743144796152	0.38799363076539	0.427413983327061	0.718571966536844
Merged-chr10-41896588-4	chr10	41896487	41896687	+	895.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013370, intron 4 of 9)	L1MC2|LINE|L1	9148.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	4.24987803660871	3.91249999298945	3.7579762877669	4.37216035513951	4.29526065357835	4.24649349463895	3.62093066124832	4.02514086618601	-0.0738551557604933	0.880609104998779	0.955181994949486
Merged-chr14-55147018-4	chr14	55146899	55147099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30064.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	7.73053795996769	7.82366100927284	7.92984661160334	7.94186077065246	8.02285315810157	7.80631117394508	7.96666805686873	7.99300311806165	0.115977927140739	0.47845474544403	0.754534847146573
Merged-chr7-19318740-5	chr7	19318629	19318829	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-8684.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	5.00071690445069	5.31613082432622	5.48393114061072	5.16645848042796	4.97503968111035	4.98502610857376	4.90278949983847	5.59911062680455	-0.194285736529715	0.567830295828175	0.808331754798167
Merged-chr11-49237808-4	chr11	49237710	49237910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6381.0	NM_010794	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	4.89562647333732	5.00421103214436	5.27529466474378	5.22159233529029	5.03651785224924	5.075838271688	5.36201949584251	5.71754531918667	0.383027464646433	0.249270589897897	0.560328612484111
Merged-chr15-98832834-2	chr15	98832734	98832934	+	991.375	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033276, exon 55 of 55)	3' UTR (NM_001033276, exon 55 of 55)	-1326.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	3.04896058714077	2.83128361929628	2.74366669933859	2.59055078218305	2.75038414046778	2.98435300395018	2.98157479453174	2.87319112835066	0.4176783055219	0.510376206248608	0.774684778107426
Merged-chr12-17507302-4	chr12	17507212	17507412	+	869.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37561.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	4.01100655483824	4.32666038401166	4.11410803485349	3.56746942887073	4.55927370129267	4.46979768943939	4.23490112710585	4.29505334615274	0.940055753628618	0.0353209625978036	0.18644965441048
Merged-chr11-49075834-3	chr11	49075733	49075933	+	768.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271677)	promoter-TSS (NM_001271677)	-754.0	NM_001271677	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	3.73714461875793	3.63858091673075	3.57358109943267	3.30934458465812	3.93311319833632	3.69173040502469	3.77183232786541	3.96921612472431	0.888423243272728	0.0629999900559448	0.266192347868461
Merged-chr6-48537571-3	chr6	48537467	48537667	+	929.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347164)	promoter-TSS (NM_001347164)	-2.0	NM_001347164	76252.0	Mm.30214	NM_133764	ENSMUSG00000039347	Atp6v0e2	0610006O14Rik|NM9.2	ATPase, H+ transporting, lysosomal V0 subunit E2	protein-coding	6.11525441065222	6.13293365440997	5.69391630519024	6.08447954464299	3.83331241771968	4.14310251989022	3.98165862862077	4.0672162106627	-4.8626266536534	7.87396574569141e-22	3.33607742745576e-19
Merged-chr11-57801992-1	chr11	57801892	57802092	+	739.666687	f0_balb.idr	promoter-TSS (NR_131042)	promoter-TSS (NR_131042)	355.0	NM_001081168	50724.0	Mm.340083	NM_001081168	ENSMUSG00000020519	Sap30l	2310079P12Rik|AF006998|L55	SAP30-like	protein-coding	3.94542476320128	3.9541304936137	4.21038814989102	3.91482537913959	3.68581107562244	3.7942959274177	3.77516529361094	4.20761259147595	-0.356985652122922	0.435554047889647	0.724674541846548
Merged-chr1-74237909-4	chr1	74237814	74238014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	1397.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	5.50706364553925	5.47369328643216	5.87720832715083	5.47172045394022	5.80045583136673	5.56500218506636	5.71357571472754	5.73861778638617	0.219752740818687	0.415693199397806	0.709886482687489
Merged-chr17-17749590-3	chr17	17749494	17749694	+	651.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45653.0	NM_001104539	626942.0	Mm.404019	NM_001104539	ENSMUSG00000092120	Vmn2r90	EG626942	vomeronasal 2, receptor 90	protein-coding	3.36134633856146	3.43430956051967	3.5252949882428	3.28725514606966	3.25349473986934	3.41556012588203	3.56008929210999	3.41675615998767	0.0472317725862718	0.926740657314333	0.97311398085719
Merged-chr17-17645876-4	chr17	17645774	17645974	+	866.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21385.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	3.88167249892867	3.82802690974312	3.98340073650863	3.95989800808389	4.36292131922411	4.00365034294286	3.75829684608204	4.16187223343004	0.492331193303976	0.266111610628426	0.577866650846371
Merged-chr1-165691691-4	chr1	165691583	165691783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	16411.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	6.83891609900737	7.14143921769728	6.84011692740808	6.88188628904072	7.0302692326583	6.44250595544757	6.88427691594739	6.41925213598355	-0.277554836534283	0.238594098854517	0.548972916561797
Merged-chr5-102060475-4	chr5	102060380	102060580	+	972.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	9441.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	4.60987741628047	4.88451399639983	4.94612230831566	5.34885535806498	4.99726649666014	5.04847143018786	4.88502702426259	5.83308876345626	0.485657892225104	0.222657430945491	0.530779104366158
Merged-chr11-82834629-3	chr11	82834524	82834724	+	880.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164570, intron 1 of 7)	B2_Mm1t|SINE|B2	-5581.0	NM_026097	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	3.67671120581846	3.8709258689615	3.62197806985827	3.16059107373686	3.8836006206098	3.74196685761915	3.49123919818796	4.08730415452247	0.648986418756073	0.224524170751217	0.532944474268878
Merged-chr8-24547457-4	chr8	24547353	24547553	+	987.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145949, intron 5 of 9)	Lx5c|LINE|L1	28880.0	NM_145949	209176.0	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	4.7477802025787	5.07060050969291	4.86339271479309	5.15159842785104	4.85478655227829	4.80020868480929	4.97768623134609	4.78485481468502	-0.256208302192604	0.438803538444522	0.726732530107543
Merged-chr13-20508710-2	chr13	20508601	20508801	+	836.0	f0_balb.idr|f1_balb.idr	intron (NM_198093, intron 1 of 6)	intron (NM_198093, intron 1 of 6)	35711.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	2.52636456575528	2.43941668504837	2.70062933016949	2.98778621243397	2.22325083149439	2.18922453120199	2.16859419207859	2.17196238935796	-3.80575714209152	0.000490105521891801	0.00760523674356583
Merged-chr7-121059757-3	chr7	121059680	121059880	+	930.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021554, intron 4 of 4)	intron (NM_021554, intron 4 of 4)	14750.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	3.8902263200372	3.93824687884637	3.9386467686112	4.16955038766649	3.69861577433385	3.54356626371293	4.09459545219421	3.55770679668947	-0.726155890981587	0.132762612718549	0.40574967843253
Merged-chr7-19871403-4	chr7	19871308	19871508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10109.0	NM_001033419	330483.0	Mm.260192	NM_001033419	ENSMUSG00000014686	Ceacam16	Gm769	carcinoembryonic antigen-related cell adhesion molecule 16	protein-coding	7.15382475423845	7.25769655153089	7.12008868246101	7.54521860005694	7.34687548485034	7.15995961051031	6.89576045115321	7.16149744267622	-0.187449569339651	0.370210235963167	0.674357518313601
Merged-chr1-4857698-4	chr1	4857602	4857802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011541)	promoter-TSS (NM_011541)	8.0	NM_011541	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	8.19374906522515	8.41713833236965	8.38228925066021	8.58872118181342	8.33237913600871	8.30353198655843	8.33265680718983	8.22586485591324	-0.140795885019689	0.38326328243878	0.685159161661391
Merged-chr7-28601928-3	chr7	28601828	28602028	+	951.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3744.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	4.73916979633918	4.81197181307348	4.31988839253005	4.20488070370873	4.41619173803335	4.1979782256426	4.20789400633738	4.12269491687936	-0.681139336089602	0.106981471751142	0.360772927359385
Merged-chr13-37600979-1	chr13	37600879	37601079	+	565.5	f0_balb.idr	Intergenic	Intergenic	-225059.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.19986974899727	3.03243023731986	3.14591288304928	3.10633846036127	2.93379361983312	2.9395423148998	3.18718683033678	2.83188684168391	-0.591622116553436	0.316995771914289	0.628905690750891
Merged-chr10-68204625-3	chr10	68204517	68204717	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	74109.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	5.23253740348603	5.37061206255341	5.45065228752179	5.42965868659079	3.51378051123216	4.15702324454044	3.87015051981578	4.08109199592973	-3.74958599085224	5.11001205730129e-15	8.28532000516283e-13
Merged-chr5-41627701-4	chr5	41627606	41627806	+	961.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310589, intron 6 of 6)	intron (NM_001310589, intron 6 of 6)	79985.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	4.72512935831336	4.3158413033199	4.92004117787226	4.84488763858368	5.08625961196837	5.32196956681447	5.36761700131676	4.98678602329948	0.916111893890577	0.00843542435337456	0.069679130793646
Merged-chr4-128680679-4	chr4	128680576	128680776	+	829.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	-8062.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	4.15418117471912	4.05975057257195	3.96837845751648	4.02901513889309	4.0506227539541	3.98448093932951	4.00068918128012	4.1082622581327	-0.038458381432318	0.925330838313534	0.972451258531213
Merged-chr16-21635796-2	chr16	21635696	21635896	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	Lx2|LINE|L1	58869.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	2.78283458586592	2.62991833244776	2.57611506001916	2.31864616543108	2.6614828128541	2.89442889603217	2.94946578957311	3.06745368653431	1.56081940305134	0.0233583793680601	0.141850190686729
Merged-chr1-58761552-4	chr1	58761446	58761646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30994.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	7.18415643481815	7.61990135449672	7.05743082328778	7.18995502176146	7.1951903799378	7.42681895812913	6.82397070417395	6.39256921018507	-0.358560505946613	0.176124659821509	0.471097217714656
Merged-chr14-25486374-2	chr14	25486274	25486474	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	27189.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	2.40833854007615	2.48108112472332	2.74867572610516	2.41026260163428	2.57406832458315	2.73028195653263	2.67723275573405	2.91514165384995	1.08621952261669	0.110203747211402	0.366573710612399
Merged-chr6-115334681-3	chr6	115334580	115334780	+	965.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA7|LINE|L1	-26271.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	4.62639096122392	5.05408117267039	5.63819734403614	5.36857103282161	4.23111447678398	4.18212106968602	4.68755850773654	4.33906597734426	-1.79916037571576	1.58284418266451e-05	0.000415585636583834
Merged-chr2-14604281-6	chr2	14604267	14604467	+	646.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023116)	promoter-TSS (NM_023116)	61.0	NM_023116	12296.0	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	3.35659177056391	3.08432872124658	3.2544789112542	3.01749309492816	3.08439356707599	2.92003010431715	3.13099430267276	3.08153741701709	-0.473967999970484	0.414373754409322	0.709044594374843
Merged-chr6-72566209-4	chr6	72566101	72566301	+	840.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144917, exon 13 of 13)	3' UTR (NM_144917, exon 13 of 13)	16554.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	4.42513165199961	4.58119975086363	4.28872692028605	4.32979420526148	4.38519879883449	4.68126371466376	4.56687169675688	4.58545206222382	0.328011942823187	0.37123147886095	0.675280729644299
Merged-chr6-29273790-2	chr6	29273690	29273890	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023516, intron 1 of 1)	B1_Mus1|SINE|Alu	1164.0	NM_023516	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	3.40128723446849	3.31894638029774	3.55652272867234	2.79995862903315	3.3121119761662	3.57361014243374	3.15114987823595	3.3439098858295	0.200429249573921	0.741181687448789	0.898139463026673
Merged-chr7-110164272-4	chr7	110164185	110164385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42226.0	NM_009516	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	7.48535366226288	7.63068100482628	6.8691033814826	7.19532887831057	7.61153328744898	7.6909678842086	7.19621533177385	7.57875106252702	0.276044514036385	0.224089176564045	0.532213663618692
Merged-chr8-126594014-4	chr8	126593903	126594103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164598)	promoter-TSS (NM_001164598)	-567.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	7.57324232383108	7.75240199239201	7.90369382679106	7.66930842456868	7.93428783588872	7.76123032161156	7.97340859357029	7.76443691248276	0.179299514906492	0.296596811748123	0.608522308921674
Merged-chr16-5255229-3	chr16	5255139	5255339	+	703.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027446, intron 1 of 7)	intron (NM_027446, intron 1 of 7)	717.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	3.3069468947031	3.368460861904	3.30738945454536	3.31918987226415	3.21714577283058	3.24002103681298	3.05632134231511	3.24934313144991	-0.499521703499547	0.352478356152832	0.659568292805988
Merged-chr17-27005838-4	chr17	27005738	27005938	+	974.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12197.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	5.42652142694749	5.17466722681972	5.10347952357827	5.22818900430032	5.27181564267514	5.06234903939844	4.90039568856593	5.19684883052593	-0.210789674599497	0.491505289892694	0.763059329264072
Merged-chr15-43382618-4	chr15	43382518	43382718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94418.0	NR_046064	100038728.0	Mm.244168	NR_046064	ENSMUSG00000072592	Gm10373	-	predicted gene 10373	ncRNA	6.52207662064676	6.33147987884072	6.14815369311699	7.10542509267189	6.61362284897144	5.982460211209	6.42348490713419	6.61225175822637	-0.234611298067586	0.427373443702583	0.71854208328636
Merged-chr3-50381768-3	chr3	50381656	50381856	+	768.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011990, intron 8 of 11)	intron (NM_011990, intron 8 of 11)	61857.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	3.77587756819623	3.53791572538202	3.68212526074963	3.98789119851552	3.38502656963519	3.32771091635366	3.45650630537873	3.28211963047411	-1.34974549759886	0.0101519163565417	0.0797487313036403
Merged-chr19-3562899-4	chr19	3562790	3562990	+	925.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360430, intron 1 of 22)	L1M5|LINE|L1	12859.0	NM_001360430	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	4.8670243906947	4.82902173924379	4.9680879572911	5.11256201070922	4.58002972577218	4.73085019474167	4.6591228715883	4.50590530357153	-0.716752902842916	0.0347405559011806	0.184506877439928
Merged-chr8-25038672-4	chr8	25038666	25038866	+	754.512512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_031257)	TTS (NM_031257)	196.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	3.12916843241756	3.18902327630326	3.30594548646028	3.39366772140643	3.3050861028749	3.3011842597757	3.23781507355042	3.18947955879075	-0.0265253932532842	0.960724897321819	0.986018439623899
Merged-chr7-138909604-4	chr7	138909498	138909698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009760)	promoter-TSS (NM_009760)	-92.0	NM_009760	12176.0	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding	8.59077896949315	8.65111221075144	8.65956332869608	8.68860406504908	8.53141678816191	8.50296071211358	8.54812015449119	8.56332695067225	-0.142299905299871	0.311615175232874	0.623631959698671
Merged-chr7-98071778-4	chr7	98071649	98071849	+	849.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 30 of 48)	intron (NM_008663, intron 30 of 48)	37499.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	3.56890674099185	3.71670581081618	3.5693616325078	3.46795376773022	3.92167588752804	3.62596166461549	3.76432538092757	3.91499027344137	0.743378825494178	0.109664671556208	0.365647920939134
Merged-chr10-127121234-4	chr10	127121112	127121312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171026)	promoter-TSS (NM_001171026)	-52.0	NM_001171026	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	7.83495791209953	7.97139538366528	7.62490262551432	7.7513503297094	7.97175171778913	8.06494570832161	7.72142202441916	7.56542763282752	0.0600399441652102	0.750741400834315	0.901855648088396
Merged-chr2-163987656-4	chr2	163987573	163987773	+	943.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCb|LINE|L1	-7524.0	NM_018753	54401.0	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	4.73908179892654	4.65991844133703	4.58279823953853	5.02960686145274	4.48602082444203	4.62831626996544	4.33672949125065	4.97152970038624	-0.3315158899156	0.384736689572457	0.68622479332142
Merged-chr15-54919366-4	chr15	54919267	54919467	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285994, intron 2 of 25)	intron (NM_001285994, intron 2 of 25)	779.0	NM_015744	18606.0	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	5.46579311844039	4.99692445891133	5.38463360011544	5.27297092468766	5.4363087547155	5.40928850833215	5.35771835212025	5.13188791720475	0.103006752457754	0.729390948538225	0.892617614737932
Merged-chr4-4792742-3	chr4	4792649	4792849	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177730, exon 1 of 5)	exon (NM_177730, exon 1 of 5)	557.0	NM_177730	242291.0	Mm.218889	NM_177730	ENSMUSG00000066324	Impad1	1110001C20Rik|AA408880|AI451589|AL022796|B230207P20|Jaws|gPAPP	inositol monophosphatase domain containing 1	protein-coding	4.5743346664359	4.41651005578659	4.92638235210554	4.53682095581364	4.50817954575359	4.57819972610018	4.63172049444896	4.57211284677223	-0.105087865909853	0.772266335084071	0.910810383351782
Merged-chr2-3622424-4	chr2	3622310	3622510	+	945.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-91048.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	4.93988865192772	4.65439689576385	4.39575916111022	4.36557167425045	4.70409111835072	5.17116817086048	4.63603402210856	4.48627765854088	0.365134051693144	0.350087448011293	0.657646260642258
Merged-chr2-31135775-4	chr2	31135682	31135882	+	963.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	intron (NM_001355105, intron 1 of 15)	6226.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	5.1058339616475	5.21201722669389	4.70467449119983	4.49859208297082	4.88480225449919	4.71478087579574	4.51611823557796	4.39208857831957	-0.532164164455007	0.179380661022461	0.47560913362456
Merged-chr6-32996766-2	chr6	32996666	32996866	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355667, intron 3 of 8)	intron (NM_001355667, intron 3 of 8)	63494.0	NM_001355667	66075.0	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	3.20646278588104	2.83661716222085	3.04962338099815	3.08634240074585	2.73133776123449	2.68890646163549	2.86040561259073	2.93118713348866	-1.11977594785588	0.0793130849121903	0.304878007828741
Merged-chr2-84426640-4	chr2	84426452	84426652	+	957.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1286.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	4.38976949919384	3.70167141620852	4.35258202204969	4.14151690714994	4.00498837453097	3.90041696489895	4.03198532625471	4.22866103407298	-0.315142048273268	0.486924373970414	0.760460233910227
Merged-chr7-25282065-4	chr7	25281978	25282178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027882)	promoter-TSS (NM_027882)	-101.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	8.64847425389299	8.83683595959963	8.77814069749143	8.77784935927128	8.72121746654494	8.61155847547513	8.94336638794783	8.58450714179084	-0.0490177124701043	0.75365360222115	0.902798885097597
Merged-chr10-68204064-3	chr10	68203975	68204175	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	74651.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	4.90046458456789	5.09796994573215	4.9653100181066	5.65696915508609	3.60543453404145	4.12831166362825	4.15685854481692	4.11480836868431	-2.86688457628361	4.65146934299459e-10	3.17133080809398e-08
Merged-chr7-16615339-4	chr7	16615228	16615428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172739)	promoter-TSS (NM_172739)	-335.0	NM_172739	232906.0	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	8.79561711084039	8.93945267254065	9.01129173472267	8.90935896202134	8.78019822660074	8.98700179075166	9.12030563405024	8.74139445981034	-0.0020885158637848	0.989443962233828	0.995744921520196
Merged-chr6-94507298-4	chr6	94507193	94507393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026255, intron 1 of 9)	intron (NM_026255, intron 1 of 9)	6979.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	6.32205757831555	6.76149163058927	6.19617601209456	6.20522727816071	5.94616787548278	5.74895943239795	5.56963318091701	5.93906258533186	-0.89284757741908	0.000904742004969533	0.0124354412569426
Merged-chr12-117845161-3	chr12	117845082	117845282	+	745.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146040, intron 1 of 9)	ID_B1|SINE|B4	1321.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	2.81130056419503	2.78967817607191	3.11165651272432	2.96931414085485	2.81413230061625	2.98510217457576	2.92961549135242	3.05529826758378	0.0742083738956779	0.902413459478398	0.963787729579172
Merged-chr11-106289649-3	chr11	106289545	106289745	+	888.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12251.0	NM_008117	14599.0	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	3.45196735876578	3.28374983462301	3.71165710433152	3.72271613626045	3.81410173362777	3.31110330994963	3.49512626342623	3.45062537703863	-0.0645209249800021	0.904798764965625	0.964691960037782
Merged-chr2-155236509-4	chr2	155236392	155236592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291108)	promoter-TSS (NM_001291108)	-41.0	NR_111891	67068.0	Mm.23693	NM_025947	ENSMUSG00000047459	Dynlrb1	2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1	dynein light chain roadblock-type 1	protein-coding	7.29982324961925	7.46372203128695	7.00523086082326	7.09743256686864	7.29737306335683	7.00426242726933	7.19187120755633	6.82140680675621	-0.17387216737376	0.414558276672473	0.709115664810829
Merged-chr10-85968251-4	chr10	85968195	85968395	+	736.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177772, intron 12 of 15)	intron (NM_177772, intron 12 of 15)	-10502.0	NM_145422	28088.0	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	3.7462666911509	3.84713380575851	3.58523802331177	3.58647956870458	3.58431032540395	3.58030840356257	3.91647347812895	3.88766933918845	0.175444628906785	0.711958997134862	0.884700502034922
Merged-chr15-85001556-4	chr15	85001454	85001654	+	891.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13583.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	4.51644886497552	4.47610291114398	4.47323894435739	4.52322356671683	4.85774694810314	4.88764880597798	4.69432237786229	4.67614269493571	0.612786311859323	0.0718514342330308	0.287919452641609
Merged-chr9-107261068-4	chr9	107260951	107261151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316691, intron 4 of 7)	intron (NM_001316691, intron 4 of 7)	28345.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	6.0071695697358	6.04127597248642	5.31829341850303	6.11904659664666	6.0741527225851	6.07260767543516	6.136522147823	5.93833504852134	0.211847501339634	0.447254662498212	0.732836251973026
Merged-chr10-77926310-2	chr10	77926210	77926410	+	886.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 21 of 33)	B3A|SINE|B2	-23774.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	3.81945439563311	3.12284792975498	3.14985924988738	3.14209093707029	3.51621664043808	3.75318263590506	3.8018626557781	3.52504764635131	1.03311347480449	0.0675959066497714	0.277522584035535
Merged-chr7-128461819-4	chr7	128461716	128461916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009383)	promoter-TSS (NM_009383)	-143.0	NM_001347640	21843.0	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	8.94034260964442	9.26436899610854	9.12548983040725	9.0238970396881	9.06679754659078	8.97284566661696	9.15723748197386	8.98378938169146	-0.0566300136773379	0.704348516806198	0.881223937553884
Merged-chr7-92637132-4	chr7	92637054	92637254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028665)	promoter-TSS (NM_028665)	-12.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	7.33557944925262	7.30983421488193	7.00005576122823	7.35652198100958	7.62536308994579	7.22994383182409	7.50571475944371	7.16890133793349	0.188761781936562	0.351885483284802	0.659108597595279
Merged-chr19-9023366-4	chr19	9023260	9023460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039959, intron 4 of 5)	intron (NM_001039959, intron 4 of 5)	34076.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	6.02346910399665	5.70105996966431	5.61490318203892	5.93924091712811	5.39587950446485	5.67951591535388	5.80660410742758	5.43861242196078	-0.421031534171319	0.128084811106419	0.39829793940521
Merged-chr16-57543558-3	chr16	57543416	57543616	+	676.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-5726.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	3.59519392468496	3.6370445648033	4.0045730968085	3.34690533296944	3.71081524953873	3.54006504347196	3.41177846473554	3.35998047163202	-0.446187344916437	0.405080841088827	0.702085545628266
Merged-chr2-144294463-3	chr2	144294351	144294551	+	922.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	23547.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	4.12209536008933	3.80800949945774	4.17246909027489	3.38604928946376	4.26511535129253	4.82650486834026	4.78856598554862	4.35171707109694	1.68369735770566	0.000367222486517817	0.0059840955512481
Merged-chr5-134607322-4	chr5	134607214	134607414	+	964.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020044, intron 3 of 12)	intron (NM_020044, intron 3 of 12)	7711.0	NM_022964	56743.0	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	5.33513326980881	5.91697544326641	5.30660047098746	5.35022189298655	5.08083395995036	5.06854243576471	5.0890286797613	4.96409333910931	-0.825613824168511	0.0100548989309166	0.0792139071393154
Merged-chr3-146158204-4	chr3	146158104	146158304	+	993.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	8030.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	5.02463789817426	4.80080262498424	4.99134742457598	4.96553359273061	5.16010354079223	5.0945037860821	5.09748979723254	4.98798709404964	0.276765425040801	0.366292648866035	0.670809284319229
Merged-chr2-73512209-4	chr2	73512086	73512286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	17301.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	6.48380070802435	6.75940983298624	6.86432690800864	7.23240087866169	6.6502864404461	6.85794354644395	6.22058620998462	6.64591077870413	-0.377586192049113	0.138946451702336	0.414521542634669
Merged-chr7-118485089-4	chr7	118484939	118485139	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033380)	TTS (NM_001033380)	6936.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	4.08228770543328	3.87103182832553	3.52733756965165	3.71939047427141	3.9974613354139	3.87747307058356	3.74283854630705	3.64572974220843	0.0510635860856919	0.914640544425004	0.96815300458935
Merged-chr14-103650153-3	chr14	103650065	103650265	+	848.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361639)	promoter-TSS (NM_001361639)	-63.0	NM_198014	105439.0	Mm.27548	NM_198014	ENSMUSG00000055717	Slain1	9630044O09Rik|AA675320|AW742596	SLAIN motif family, member 1	protein-coding	4.24391760702427	3.32160730415367	3.66659730773623	3.38850441329762	3.53608804472171	3.28054840562956	3.59823346642645	3.7649472392366	-0.458016824003131	0.428466034593496	0.719507959429316
Merged-chr13-54621748-4	chr13	54621668	54621868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178397)	promoter-TSS (NM_178397)	-16.0	NM_178397	76577.0	Mm.194459	NM_178397	ENSMUSG00000025873	Faf2	2210404D11Rik|AI462440|Ubxd8|mKIAA0887	Fas associated factor family member 2	protein-coding	6.44461779057637	7.01991923305246	6.51740058844937	6.75558685695292	6.82574568535141	6.95952702455419	6.86921256381329	6.69099368558525	0.177614826984436	0.424943241099128	0.716567599871949
Merged-chr7-45103168-3	chr7	45102905	45103105	+	817.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010189, exon 2 of 7)	exon (NM_010189, exon 2 of 7)	817.0	NM_001357117	14132.0	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	2.8965178370093	2.85433398836443	2.95583979122912	2.9925626300513	2.739868520408	2.65688059510954	3.10304549859956	2.83372124403715	-0.383145378499639	0.545747322250613	0.795980613958413
Merged-chr10-17550867-4	chr10	17550768	17550968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-172360.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	6.44160288376312	6.61053249713707	7.461592512035	6.93754336415381	6.09630628576012	6.10403144804904	6.70884380128061	6.3262138107429	-0.852530390044898	0.00353067059365121	0.0363111692220054
Merged-chr4-59594756-4	chr4	59594606	59594806	+	950.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301367, intron 5 of 11)	MTC|LTR|ERVL-MaLR	13143.0	NM_024255	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	3.45893356496494	3.51829431906446	3.64679866122369	3.75060830332648	3.78271325901315	4.17126430942215	4.10955045112124	4.04367114975437	1.19036317014134	0.0121831230793891	0.0908996013915975
Merged-chr17-73416521-4	chr17	73416418	73416618	+	861.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-17222.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	4.29491617927161	4.19462766593875	4.37910237064878	4.3437027348564	4.20119489295854	4.18273049847553	4.23292441582759	4.29290097237469	-0.196250485281371	0.60967537076568	0.831167440112817
Merged-chr13-45388382-4	chr13	45388333	45388533	+	797.892822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1309.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	3.66994408556561	3.50968500965791	3.3819489072548	3.03418591501097	3.3247064142973	3.19100279644187	3.06949655435588	3.07781757068476	-0.879286222555461	0.140840597462924	0.417402079106144
Merged-chr14-30616944-4	chr14	30616845	30617045	+	774.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	-6635.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	4.28416260454935	3.93955602411691	4.74295284188709	4.13361147654052	4.24204336339747	4.07066553530918	4.17805107240495	3.82917383927823	-0.52045865634549	0.25694155069098	0.568647554151895
Merged-chr8-46791350-3	chr8	46791239	46791439	+	650.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	51594.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	3.63692585293464	3.61804942171602	3.36829569637537	3.69884299893453	3.62850977810321	3.28551508054964	3.41424742405091	3.3054955175507	-0.555565473666773	0.290629338146549	0.602869066641471
Merged-chr4-40018372-1	chr4	40018272	40018472	+	797.0	f0_balb.idr	Intergenic	Intergenic	-124893.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	2.7809515533871	2.68933325234089	2.95296153616557	3.18060652574137	2.50942518204121	2.6131263816315	2.5042045345609	2.65147037252926	-1.86290393898087	0.010467201667827	0.0816129858159993
Merged-chr1-52302793-2	chr1	52302693	52302893	+	760.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-69561.0	NM_001113383	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	3.031928868889	2.76700476376313	2.81708995044566	2.71252348138857	2.64221584761713	2.42608154846549	2.55091700340588	2.6926210546345	-1.27018928149895	0.0711609720378717	0.286135285769047
Merged-chr12-69357135-4	chr12	69357037	69357237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025441)	promoter-TSS (NM_025441)	39.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	5.30155683365722	5.11661274292137	5.33309814244319	5.35667588062628	5.62280029147334	5.6217343701107	5.33635913546307	5.38848238828608	0.385657157878013	0.173513848078638	0.467581910161457
Merged-chr16-95896117-2	chr16	95896017	95896217	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040484, intron 1 of 3)	ORR1F|LTR|ERVL-MaLR	2596.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	2.99931766698285	2.73063556556545	2.65185382343997	3.06336167126108	3.23728455626214	3.16990097686657	3.10439451566999	3.11502302977545	1.12057977870384	0.0807351610275092	0.308213892559779
Merged-chr12-81595106-4	chr12	81595008	81595208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347386)	promoter-TSS (NM_001347386)	-100.0	NM_001347384	69792.0	Mm.279993	NM_027213	ENSMUSG00000002679	Med6	1500012F11Rik|AU019660|AV213303	mediator complex subunit 6	protein-coding	7.80344806191289	8.06819177792033	7.4997058394037	7.47227297440948	7.85836865608343	7.59732996233982	7.59834518666576	7.81442875243085	-0.00605898070653244	0.976428490491096	0.991537706656775
Merged-chr2-167388584-4	chr2	167388497	167388697	+	911.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33113.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	4.85535019065151	5.56250562327551	5.0051328102746	4.37622544784365	5.31261953623926	5.51481330445371	4.90886650918959	4.81290538417391	0.281724532147914	0.496586792118818	0.766536937808496
Merged-chr6-145835572-3	chr6	145835460	145835660	+	931.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27177.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	3.67371931458694	3.43999695117155	3.57632906569643	3.90669624365504	3.36645623838282	3.04169157986578	3.40095290685656	3.4118498325223	-1.2106952697968	0.0304314197620968	0.168873695979874
Merged-chr5-121597530-4	chr5	121597435	121597635	+	933.7958369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178799)	TTS (NM_178799)	-3711.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	4.69432728934382	4.84287901086832	4.27025397180492	5.04274361204332	4.8774293755112	4.98360269335646	4.71265940042326	5.04213743447892	0.293936903638872	0.434541922952687	0.7238182012175
Merged-chr6-114400596-4	chr6	114400485	114400685	+	844.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317126, intron 1 of 1)	intron (NM_001317126, intron 1 of 1)	2499.0	NM_001317126	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	4.9720528439326	5.27146713110655	4.90588605407265	5.51205146402882	4.38617981471331	4.43733285221903	4.43830804517132	4.35489369566998	-1.70426502488804	4.16293008155971e-06	0.000126144401990353
Merged-chr1-170853775-4	chr1	170853678	170853878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 2 of 15)	intron (NM_001081304, intron 2 of 15)	13993.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	7.04201411723845	7.23481519116507	6.6907940248366	6.85268827123508	6.88050268187861	7.18349181111474	6.83094620460898	6.44573932461193	-0.15348667516591	0.51947379663309	0.780109400619155
Merged-chr3-89796527-4	chr3	89796397	89796597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	22888.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	7.56066885247751	7.54444170444014	7.63039546118834	7.63763775284565	7.02947954793262	7.47619592406781	7.69644351712222	7.34665923942742	-0.257741121797261	0.200248475742964	0.502259964838292
Merged-chr2-133020624-4	chr2	133020517	133020717	+	936.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74581.0	NM_198029	241639.0	Mm.209784	NM_198029	ENSMUSG00000027356	Fermt1	5830467P10Rik|Kindlin-1	fermitin family member 1	protein-coding	4.40734871307855	3.80371167919534	3.82067253191848	4.83719034625233	3.91827357557582	4.58413239298024	4.58542176719085	5.06399082797036	0.743353172234189	0.357376135560825	0.663494847536382
Merged-chr6-84061491-4	chr6	84061406	84061606	+	763.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 4 of 54)	intron (NM_001077694, intron 4 of 54)	42120.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	3.44023750722004	3.42044556325442	3.25578686736011	3.57059799721784	3.69092761731715	3.55484528002533	3.68393679238475	3.49505811420802	0.563148278832515	0.261728978265366	0.573659952084696
Merged-chr12-16589787-4	chr12	16589695	16589895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172950)	promoter-TSS (NM_172950)	-25.0	NM_172950	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	6.48947362005016	6.1969477409579	6.0414916250422	6.11519849688711	6.03621391954315	6.05781233902968	6.09374334374723	5.82629897302396	-0.319662511127965	0.19079834831096	0.4902651757852
Merged-chr4-102760228-4	chr4	102760133	102760333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285852)	promoter-TSS (NM_001285852)	98.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	5.5553824738717	5.60285408876989	5.36813328451651	5.62548339222425	5.07487769645028	4.78861174402783	5.25187454383019	5.39302779629174	-0.724074723484318	0.0173339033720654	0.116188898024319
Merged-chr8-104631419-4	chr8	104631269	104631469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019662)	promoter-TSS (NM_019662)	-48.0	NM_019662	56437.0	Mm.29467	NM_019662	ENSMUSG00000031880	Rrad	REM3|Rad	Ras-related associated with diabetes	protein-coding	6.14845809277806	6.06275674490816	5.98204827520126	5.85179377889688	6.44410351208002	6.13557414123782	5.99528308357347	5.90882648441578	0.225712188728064	0.376031358746084	0.678890741477518
Merged-chr14-55491010-3	chr14	55490910	55491110	+	809.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024645)	promoter-TSS (NM_001024645)	-60.0	NM_001024645	268747.0	Mm.151577	NM_001024645	ENSMUSG00000022211	Carmil3	Lrrc16b|mFLJ00240	capping protein regulator and myosin 1 linker 3	protein-coding	3.70461468607789	4.03850792435091	3.48400090889875	3.75382429844255	3.5153550130909	3.47178225481103	3.63864904122733	3.65124574645821	-0.604111985652938	0.223190485981824	0.53121133271385
Merged-chr19-56397271-4	chr19	56397138	56397338	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007611, exon 1 of 7)	5' UTR (NM_007611, exon 1 of 7)	109.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	5.33909071742508	4.92386566724646	5.42235986237314	5.02023256992515	5.34469735379739	5.00289161150776	5.31328637468415	5.33627801242788	0.155560601263099	0.621294978063174	0.837757076551181
Merged-chr14-45155865-4	chr14	45155765	45155965	+	842.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310534, intron 14 of 20)	MT2A|LTR|ERVL	63560.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	3.49734499177811	3.4750149829574	4.05378909681334	3.56871958046797	3.64583846277529	3.42523788450842	3.48470057221304	3.60702436359846	-0.371723321389605	0.471908257730457	0.750160972753784
Merged-chr13-36117524-4	chr13	36117430	36117630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024274)	promoter-TSS (NM_024274)	-113.0	NM_024274	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	7.89058650518107	8.06087612644744	8.0737317470044	7.99801040255176	7.75432889375159	7.7014726452252	7.9034600426075	7.75687664771486	-0.29423346659258	0.0685484971022585	0.279616363005337
Merged-chr7-143007522-3	chr7	143007433	143007633	+	891.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020286, intron 2 of 7)	intron (NM_020286, intron 2 of 7)	1874.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	2.93585693507593	3.10696516634016	3.21790637091768	2.67386327620739	3.69825278438135	3.57167325073334	3.48839665066407	3.69244281413158	2.43412400231438	3.44016588052269e-05	0.00081513837286859
Merged-chr11-69118079-4	chr11	69118039	69118239	+	950.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2314.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	4.73261381201564	4.70676896620085	4.83536644234978	4.66388434424747	4.51459077193496	4.53928153500073	4.39124330081848	4.45234515302842	-0.563201738516072	0.109204393124019	0.364932370806315
Merged-chr11-20656083-4	chr11	20655982	20656182	+	949.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24105.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	5.49407360832328	4.84010451946197	5.16627992802336	5.45133153298789	4.78695947375664	4.76664918234736	5.07699735019233	5.22379399740976	-0.561296696011676	0.104844608723623	0.356162844804429
Merged-chr3-96559605-4	chr3	96559487	96559687	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009935, intron 4 of 7)	intron (NM_001009935, intron 4 of 7)	1630.0	NM_001009935	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	4.94368706158692	4.82357825112699	4.9074064791363	5.14405610741067	5.13807626121231	5.22292080424643	5.09030673321115	5.2335148284748	0.368600986025846	0.235625122536326	0.54561108304163
Merged-chr11-118457752-3	chr11	118457705	118457905	+	852.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-2810.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	3.33281984816141	3.31682427064369	3.38946230565267	3.43731909686236	3.67986771151847	3.25820630966122	3.13874926253988	3.38763684846716	0.0740053361012405	0.892081634584633	0.9596010491436
Merged-chr19-34583045-2	chr19	34582945	34583145	+	817.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010501)	promoter-TSS (NM_010501)	-484.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	3.53105956226548	3.24957372126032	3.25415710134245	3.0144446563866	3.39601993808928	3.59794300845559	3.51616362531298	3.18937118265478	0.594894535343146	0.280529993145835	0.592552803790355
Merged-chr6-13672899-4	chr6	13672817	13673017	+	879.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175312, intron 1 of 4)	B2_Mm2|SINE|B2	5049.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	4.39360689829192	4.45945767184319	4.10227458649844	4.44042305236258	4.50328102348134	4.93629362866874	4.2380319164421	4.34721199787846	0.382775605572207	0.344629492350805	0.653115967838279
Merged-chr10-81177180-4	chr10	81177086	81177286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007907, intron 1 of 13)	intron (NM_007907, intron 1 of 13)	555.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	5.31956618583033	5.50449091760471	5.68288737704389	5.35628561770456	5.68199482334349	5.36286808250443	5.67801011416442	5.89840395507971	0.355487128094227	0.207245482266657	0.511181071672855
Merged-chr2-181529289-3	chr2	181529200	181529400	+	745.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271584, intron 2 of 5)	intron (NM_001271584, intron 2 of 5)	8815.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	3.488904690017	3.26081328323133	3.22832199766274	3.33644047285337	3.06271788264646	3.00854057913678	3.27224229061383	3.16744052030869	-0.778156473604069	0.163763251218679	0.453530988494127
Merged-chr8-4779630-4	chr8	4779528	4779728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011369)	promoter-TSS (NM_011369)	-61.0	NM_011369	20419.0	Mm.37801	NM_011369	ENSMUSG00000022322	Shcbp1	mPAL	Shc SH2-domain binding protein 1	protein-coding	6.90606477289101	6.99354480823393	7.09742596306815	7.19824664373478	7.17305623552339	7.1508987971132	7.32489132468387	6.81755254960799	0.0954086675496967	0.639946406481975	0.847834293768018
Merged-chr7-30195103-4	chr7	30194968	30195168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009795)	promoter-TSS (NM_009795)	85.0	NM_009795	12336.0	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|Cdps|Css1|D7Ertd146e	calpain, small subunit 1	protein-coding	7.3680603963958	7.34353664862013	7.16937552274069	7.16181146832154	7.24520736767774	7.28807873475926	7.32294600311723	6.82607797699607	-0.0991340396451744	0.619715751061767	0.836791403892028
Merged-chr6-115909256-3	chr6	115909160	115909360	+	754.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167763, intron 17 of 28)	intron (NM_001167763, intron 17 of 28)	-22667.0	NM_145383	212541.0	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	3.89142390725564	4.36620195903897	3.73614377988308	4.09378452857123	3.81105173733467	3.67693375883054	3.7749212241163	3.49328558641166	-1.00608787555842	0.0400594543113812	0.201925635467021
Merged-chr4-133204615-3	chr4	133204477	133204677	+	912.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7959.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	3.25150344368825	3.27282459701321	3.35896423654388	3.16960201157823	3.06579071446863	3.24625529060537	2.85823091744784	3.25016027603132	-0.579697137970146	0.313819178185007	0.625783310940766
Merged-chr2-18992749-3	chr2	18992647	18992847	+	937.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	RLTR12G|LTR|ERVK	5374.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	4.24092103305428	4.5015900589947	3.81930252079156	3.91013755634545	3.77236906696805	3.88406516910756	3.74827788083104	3.97358110948223	-0.815040303225255	0.0840984374549287	0.315353633948181
Merged-chr2-36238478-4	chr2	36238370	36238570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 5 of 10)	MamGypLTR3a|LTR|Gypsy	8044.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	6.29243645574341	6.23898230232464	7.15771331616265	7.09904847194726	6.43570799639947	6.20500142516846	6.8364998179731	6.95356386902012	-0.189655937099178	0.536817402334098	0.790738613941833
Merged-chr14-77823034-3	chr14	77822936	77823136	+	954.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24068.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	3.99928317104606	3.66553815746964	3.95524906672757	4.09582800301669	3.44190324292437	3.76689340539992	3.74386685043622	3.80874776574479	-0.754994080436815	0.115044077974935	0.37538953609823
Merged-chr4-136470730-3	chr4	136470633	136470833	+	888.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024452, intron 1 of 4)	CpG	972.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	3.15773344234157	3.31038808865259	2.95250058501962	3.52850128694977	3.21133741031103	3.4494220802591	3.26730031283825	3.49040150397604	0.316319203272427	0.590138930707245	0.820788614979601
Merged-chr2-24976685-3	chr2	24976592	24976792	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146251, intron 1 of 34)	B1_Mus2|SINE|Alu	659.0	NM_146251	241274.0	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	3.81437559181408	4.15716082152396	4.31588157200098	3.53780237082532	4.24749111703772	3.81985104433475	3.79976327120372	4.10948000825784	0.0793460805103529	0.873310322886017	0.952518471846518
Merged-chr10-95256344-4	chr10	95256262	95256462	+	713.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	67347.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	4.08447881532423	3.83547034047251	3.84546137222228	3.89196624815654	3.80642528880909	4.01857450024172	4.02280167523691	3.99214397492773	0.116553744807006	0.786590992179072	0.917051745734267
Merged-chr8-117526343-4	chr8	117526250	117526450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	28075.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	6.88432508216571	6.46516820079293	6.39132805135969	6.73297604067165	6.2045003746995	6.10280752743782	6.37619215648178	6.27506725058228	-0.583610018748566	0.0120382535043976	0.0901384691749506
Merged-chr5-148536360-3	chr5	148536256	148536456	+	767.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	15317.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	3.09098704508159	3.27465629274766	2.8188002423231	3.08888331486813	2.87505397460401	3.20286312673871	3.35312752505653	3.31528207498195	0.449268123212559	0.459319344982814	0.74191298834993
Merged-chr5-114661222-4	chr5	114661108	114661308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-2787.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	7.05616444156844	7.06895327631423	6.91805702597147	6.94486997276005	6.9388052010071	7.06782362266599	7.04552085447358	7.16674855220513	0.0782254083714998	0.676968770935254	0.867354572468851
Merged-chr14-63144336-4	chr14	63144251	63144451	+	876.1166380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010191)	TTS (NM_010191)	21889.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	4.9020059536997	4.73288171910392	4.37569569756813	4.75960172589178	4.17008336804918	4.40843537295705	4.30956569852892	4.73553993854603	-0.656495780119216	0.0939240438462348	0.335277877261288
Merged-chr6-53986398-3	chr6	53986225	53986425	+	940.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110484, intron 1 of 3)	intron (NR_110484, intron 1 of 3)	7634.0	NR_110484	320178.0	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	4930590G02Rik	RIKEN cDNA 4921529L05 gene	ncRNA	2.70488155722921	2.55914694628665	2.6205781927685	2.37388015234082	3.29854153134283	3.42898124214779	3.17851899091618	3.9566564582222	4.72920639746591	1.36052736693914e-09	8.53224470937104e-08
Merged-chr7-80778573-4	chr7	80778430	80778630	+	894.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	24801.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	3.61857024543489	3.44016547260792	3.56262438209845	3.86669227269747	3.7304985467053	3.42334770409382	3.80631075594188	4.03590768576125	0.369678691160905	0.469654302814301	0.748495910704808
Merged-chr15-90654434-2	chr15	90654338	90654538	+	670.083374	f0_balb.idr|f1_balb.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	24950.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	3.31479273921079	3.4464137546987	3.73057376805554	3.49468091433324	2.87351846731619	2.81222452700325	2.85658350652243	3.00757606479085	-2.74559373563734	5.94324165761972e-05	0.00131092035310726
Merged-chr3-146584221-4	chr3	146584183	146584383	+	939.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019957, intron 6 of 6)	intron (NM_019957, intron 6 of 6)	-12866.0	NM_009474	22262.0	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	4.30586982449746	4.23480131855717	4.30654722686417	4.40623161776382	3.90828344563955	3.91912321649763	4.24461050822389	4.38519390982175	-0.487892114908554	0.241354031654457	0.551893427754196
Merged-chr13-49682082-4	chr13	49681961	49682161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172015)	promoter-TSS (NM_172015)	-69.0	NM_172015	105148.0	Mm.21118	NM_172015	ENSMUSG00000037851	Iars	2510016L12Rik|AI327140|AU044614|E430001P04Rik|ILRS	isoleucine-tRNA synthetase	protein-coding	7.33213668653963	7.2111652451659	7.19362299570049	7.17360119732651	7.49499042342263	7.38188235960151	7.36595724361679	7.276363539584	0.218777905015148	0.217200048928759	0.523995275425022
Merged-chr5-123720553-3	chr5	123720451	123720651	+	899.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027494, intron 1 of 13)	CpG	493.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	3.28142684647457	3.60299346750769	3.28186474310141	2.61548867600219	3.42465059795497	3.2709611956245	3.58390729077731	3.33883419812431	0.538588832337712	0.416153141513402	0.710072021761014
Merged-chr10-94966927-4	chr10	94966822	94967022	+	881.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22344.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	4.09456661817474	3.88699239601911	3.95733625767569	3.8864870903096	4.06462251059177	3.74571214180337	3.94063086307559	4.04839362860934	0.0269060489509675	0.95037617838344	0.982264362614525
Merged-chr4-58913766-4	chr4	58913636	58913836	+	900.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172381)	promoter-TSS (NM_172381)	-987.0	NM_172381	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	4.11551830158506	3.99378487999778	3.96831516195739	4.31488629030291	4.43985585168094	4.14244685778504	4.09840078002145	3.9129268148929	0.139268761744873	0.749207547346315	0.901219204917164
Merged-chr5-107437907-4	chr5	107437843	107438043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001255991)	promoter-TSS (NM_001255991)	-54.0	NM_001255991	100503185.0	Mm.366650	NM_001255991	ENSMUSG00000111375	Btbd8	EG627196|Gm16115	BTB (POZ) domain containing 8	protein-coding	6.72540347418259	6.36685717987751	6.66743808007534	6.60789459773446	6.65867666730435	6.64841771202324	6.80238031889665	6.8840333750302	0.220217090428545	0.293744372156307	0.606184232084391
Merged-chr2-32847329-4	chr2	32847223	32847423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009295)	promoter-TSS (NM_009295)	-86.0	NM_001113569	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	8.137886070021	8.41493642174362	7.90683637896812	7.9352006592755	8.35614227414722	8.37182837597207	8.30130526753649	8.00936979569785	0.19883546534086	0.291080125922063	0.603360385654985
Merged-chr3-27289029-4	chr3	27288968	27289168	+	907.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28009.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	4.0928763736922	4.09520309911542	4.60706932276522	4.51599961606861	4.2962748059803	4.00532775652096	3.81008299043557	3.88051633499591	-0.835704386135363	0.0674255588877712	0.277110910333892
Merged-chr9-121320670-4	chr9	121320565	121320765	+	995.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	23163.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	4.82253455975283	4.54275202712477	4.01866204681851	5.0429717210998	4.54146367065544	4.20633571452663	4.76631685283842	4.67971617719295	-0.229331935331836	0.606802498444739	0.829617829632128
Merged-chr14-31019112-4	chr14	31019014	31019214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153547)	promoter-TSS (NM_153547)	17.0	NM_153547	30877.0	Mm.88512	NM_153547	ENSMUSG00000042354	Gnl3	Ns	guanine nucleotide binding protein-like 3 (nucleolar)	protein-coding	6.99383768378161	7.18947704572953	6.3308691280447	6.66216098419048	7.18168521170535	7.27719054279662	6.74656365136914	6.77627956141549	0.258492759699448	0.3185682428138	0.630414216554351
Merged-chr8-25012611-1	chr8	25012511	25012711	+	555.0	f0_balb.idr	intron (NM_001270996, intron 1 of 21)	intron (NM_001270996, intron 1 of 21)	4311.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	3.80524121901656	3.81937756440186	3.40511451145191	3.49319695733579	3.90458313501588	4.06861081272115	3.68817896264477	3.64666152478905	0.597441302464299	0.21926437625952	0.526748085921778
Merged-chr19-55236235-4	chr19	55236124	55236324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 2 of 20)	intron (NM_001081076, intron 2 of 20)	5012.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	6.24141640003383	5.81042561000721	6.85017259497732	6.77554739659651	5.81288910868149	5.73531569770426	6.30185570981232	6.17947731048531	-0.700635612633347	0.025356335187189	0.149978276739981
Merged-chr1-56972366-4	chr1	56972278	56972478	+	881.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024325, exon 1 of 1)	non-coding (NR_024325, exon 1 of 1)	909.0	NR_024326	329160.0	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA	4.1950162313308	4.3478549456675	4.42483768936484	4.29103746241544	4.58505703785743	4.71427276861257	4.36244593125276	4.33527268962212	0.451629440432336	0.228698732059169	0.53751187218886
Merged-chr5-35747030-4	chr5	35746935	35747135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7048.0	NM_001359895	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	6.15207637172607	5.98697067299968	6.26708848719182	6.3649222402889	5.96106447497322	5.91202202860789	6.16060901707653	6.22579244888756	-0.218343350049863	0.368401524974535	0.67281911392627
Merged-chr13-20120854-4	chr13	20120818	20121018	+	906.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	30411.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	4.55828472114239	5.02783374575717	5.06648517697902	4.69279654787799	5.16725627311475	5.27039092477163	4.67319958437078	5.27044988570799	0.526920057201792	0.134197981665788	0.407825042139404
Merged-chr6-116136368-4	chr6	116136258	116136458	+	934.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 2 of 5)	intron (NM_177412, intron 2 of 5)	57016.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	4.4607042222453	4.63851840228674	4.59272224567931	5.10176348436077	4.97751936185688	4.49610152300594	4.48660670354875	4.81765383375494	-0.0472353734304574	0.904957244606508	0.964695555007872
Merged-chr11-31718308-3	chr11	31718220	31718420	+	998.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46458.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	4.82111309144719	4.83255439628701	6.01132914221081	6.11826601617564	4.07206974988073	4.31118348718434	4.53661613690965	4.55522611290747	-2.42264814466582	2.09127974956784e-07	8.39093581141428e-06
Merged-chr1-128103195-4	chr1	128103103	128103303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027678)	promoter-TSS (NM_027678)	-103.0	NM_181750	226412.0	Mm.221041	NM_181750	ENSMUSG00000056211	R3hdm1	R3hdm	R3H domain containing 1	protein-coding	9.06425024554182	9.15836813626324	9.18283827614005	9.23049052018672	9.123715443092	9.12158573724086	9.24100151273691	8.94947317760834	-0.0606416059983765	0.672563691916832	0.865267714888623
Merged-chr11-4123395-4	chr11	4123304	4123504	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-4675.0	NM_144520	67815.0	Mm.253922	NM_144520	ENSMUSG00000003585	Sec14l2	1300013M05Rik|Spf|TAP	SEC14-like lipid binding 2	protein-coding	5.04735077621168	4.72728561972301	4.8764017572887	5.1640515482442	4.67085097987881	4.97612072363158	4.73887653032877	5.25130209378022	-0.104195026164526	0.766982888548536	0.908816541333989
Merged-chr14-25460298-4	chr14	25460207	25460407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	CpG	1122.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	6.17342984391474	6.22066626739179	5.92670084784184	5.86530358427194	6.02326110172322	5.85331217856679	6.00510899831359	5.77771759763647	-0.191346908677182	0.446308296412163	0.732070214816399
Merged-chr11-8706110-4	chr11	8706012	8706212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-41577.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.58832639054886	5.54884304147994	5.16259006854569	5.50074406620638	5.57189755638026	5.37716563207949	5.45374093073208	5.94281376333005	0.24238151431287	0.409293594032727	0.704924233683108
Merged-chr9-66512558-4	chr9	66512479	66512679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175206, intron 1 of 1)	intron (NM_175206, intron 1 of 1)	2014.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	6.29350376609508	6.15085827470259	5.52642705998778	6.25991594835447	5.93751182858361	6.10977472474123	5.87968334252814	6.30740891795292	-0.0555049090541701	0.842347679652577	0.940176660530117
Merged-chr6-72395082-4	chr6	72394985	72395185	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4418.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	5.25276980711458	5.06226797522437	4.89371511052154	4.94330159120976	5.26715790786705	4.8258107146433	4.66829582656327	5.38459022574668	0.0748423895037964	0.830117571969566	0.934816375642282
Merged-chr1-88573741-4	chr1	88573650	88573850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	22233.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	5.62851796114379	5.57942204106936	5.62948663123493	5.65238832339848	6.07614876446853	5.90898070808871	5.8688303234985	6.03951718212696	0.582091710130347	0.0177845565359455	0.118229844930612
Merged-chr3-16079412-1	chr3	16079312	16079512	+	555.0	f1_balb.idr	Intergenic	Intergenic	-73080.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	2.59309256436003	2.44657831472011	2.65087115160709	2.46490913814847	2.31652921614664	2.28214023759065	2.25498498608773	2.46896522069026	-1.22561895720182	0.101904014804505	0.350390119789857
Merged-chr4-108790688-4	chr4	108790587	108790787	+	956.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9599.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	4.59869533725807	4.89500764454948	4.71834040586521	4.99240524339746	4.84413791830813	4.39962095974358	4.5784883850042	4.63731554404423	-0.394666943697506	0.275909726658689	0.587940557250512
Merged-chr10-68844844-4	chr10	68844758	68844958	+	936.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121112.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	4.66489229409032	4.58776806015429	5.34107335944229	4.78853672936942	4.85912315243686	5.30692757071623	5.34090097937622	5.85048384790104	0.945490933135643	0.0143839371764551	0.101853786737256
Merged-chr4-35223653-4	chr4	35223563	35223763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	intron (NM_001081343, intron 1 of 10)	2217.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	6.54769258379346	6.28587106521749	6.48258573019234	6.48905356179638	6.816175415844	6.4965192738632	6.66645692007437	6.57602901116155	0.289232194199821	0.176131150449183	0.471097217714656
Merged-chr2-145859507-4	chr2	145859394	145859594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 8 of 12)	intron (NM_028724, intron 8 of 12)	-43747.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	6.73493368903039	6.62091992297361	6.63715073566479	6.8993123056824	6.31517926655896	6.02676032885713	6.43065392467444	5.84066957085506	-0.815717852716933	0.000708589011988701	0.010216652200573
Merged-chr6-115344258-2	chr6	115344158	115344358	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16693.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	2.94621368577068	2.95175071154053	2.60002621802505	3.13903145795847	2.78357625820724	3.05493718392951	2.99484919827029	3.06143912737985	0.186780899716069	0.776143232396634	0.912749878378878
Merged-chr3-95315228-4	chr3	95315092	95315292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029789)	promoter-TSS (NM_029789)	2.0	NM_029789	76893.0	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	7.52612554206751	7.09559321212924	6.92933351595129	7.4707632878236	7.18231429910777	7.2389356593902	7.40097769990894	7.2207740683061	-0.0347117447393509	0.869444428442449	0.951041691850644
Merged-chr4-139170462-2	chr4	139170354	139170554	+	596.333374	f0_balb.idr|f1_balb.idr	Intergenic	LTR79|LTR|ERVL	10201.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	2.51464464873461	2.57765454100363	2.57505409032984	2.52608320684074	2.21581924746277	2.41737923224987	2.23706366836857	2.24143641588651	-1.73741480861691	0.0260251256014601	0.152554611446801
Merged-chr7-110060960-1	chr7	110060860	110061060	+	1000.0	f0_balb.idr	promoter-TSS (NM_009281)	promoter-TSS (NM_009281)	-742.0	NM_009281	20841.0	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	4.53387798014543	4.63367078839449	4.98170007686106	4.57847738820473	4.72391766263207	4.75443634487286	4.86012035226454	4.91395394832166	0.268891630921872	0.434794635912405	0.724020292188773
Merged-chr7-63914260-4	chr7	63914137	63914337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-2620.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	6.77352150316065	6.66005329904902	6.25718305652751	6.86189739935593	6.33666450287332	6.39412291868974	6.6556704649238	6.86211004260286	-0.134449937195198	0.584731320307933	0.817725463637045
Merged-chr12-4477217-7	chr12	4477104	4477304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010881)	promoter-TSS (NM_010881)	-22.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	4.17997684391997	4.38545909875624	4.12648652411612	3.89581437402679	4.84190276757135	4.68293728286593	4.90260533836698	4.79946746428541	1.52733502475384	4.12893395996749e-05	0.000958363751300135
Merged-chr14-55089377-4	chr14	55089251	55089451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039198, intron 1 of 9)	intron (NM_001039198, intron 1 of 9)	2697.0	NM_001039198	239102.0	Mm.441113	NM_001039198	ENSMUSG00000040721	Zfhx2	ZFH-5	zinc finger homeobox 2	protein-coding	7.36167366633073	7.27418214867952	6.93202004477667	7.27615985109585	6.89052459106674	6.90515772600988	7.31669584598958	7.01840305506186	-0.250581584915321	0.227568606796376	0.536236827992163
Merged-chr4-107731088-1	chr4	107730988	107731188	+	837.0	f0_balb.idr	Intergenic	Intergenic	-46926.0	NM_019872	56296.0	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	3.00505282307549	3.09039262463694	3.3658412861302	3.29449414416328	2.51400171851756	2.77572579753563	2.58446235665099	2.8791528661808	-2.62192864299318	0.000526023060623073	0.00804335025393979
Merged-chr8-11452211-4	chr8	11452110	11452310	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25719.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	5.75078541790253	5.54110480730981	5.36422499998635	5.3957504416797	5.41697203500172	5.56892770654871	5.10818121473696	5.47595472117447	-0.195181982567611	0.502599727882094	0.769776320401967
Merged-chr7-100372068-4	chr7	100371968	100372168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028292)	promoter-TSS (NM_028292)	-165.0	NM_001017985	277939.0	Mm.276374	NM_001017985	ENSMUSG00000047248	C2cd3	AU020772	C2 calcium-dependent domain containing 3	protein-coding	8.69835748041425	8.88085948506904	8.47587373002517	8.46278309344795	8.66087959492287	8.78919342561931	8.4768524174528	8.67266855689989	0.0191017877936113	0.910659672511332	0.966752366437927
Merged-chr19-29496390-4	chr19	29496277	29496477	+	844.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25610.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	4.44263448036894	4.13887553827017	4.48445235716873	4.76072057745474	4.61872141173474	4.23737326559168	4.42318341119385	4.39808414093928	-0.129602090638842	0.748472426027703	0.900999421474581
Merged-chr9-61946905-4	chr9	61946824	61947024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024245)	promoter-TSS (NM_024245)	-125.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	8.108433130816	8.10373774042372	7.628820900648	7.60560524556803	8.06503473014513	8.15118814481073	7.94219464675077	7.91943716218549	0.186048006870488	0.34211656231081	0.651092612195426
Merged-chr17-67384786-4	chr17	67384685	67384885	+	982.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-30294.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	5.2031264549189	6.0345235189183	5.74358166607744	5.46209771804548	5.51516324356435	5.82123610353259	5.40292726925763	5.09029707565969	-0.279616654826359	0.400212938845597	0.698130218315876
Merged-chr13-89740419-4	chr13	89740347	89740547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081249, intron 1 of 14)	intron (NM_001081249, intron 1 of 14)	2065.0	NM_001081249	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	6.1077351630915	6.28821158632777	6.19201965139655	6.56178888184108	6.3694304254312	6.0006750239447	6.58141224697719	6.22720116412335	0.00056088105891544	0.998223672886958	0.999188468881297
Merged-chr12-3686670-4	chr12	3686548	3686748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 8 of 17)	intron (NM_001162465, intron 8 of 17)	113664.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	6.14045808058084	6.65543199228343	6.72419561823668	6.62547389829305	6.30923507003396	6.36209764098605	6.44991251311773	6.30029411790458	-0.30484076216378	0.188244335086027	0.486844904377598
Merged-chr6-145304703-3	chr6	145304588	145304788	+	860.288879	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54136.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	2.91482588701513	3.40251653476471	2.99273807262213	3.18911699981885	3.66410543355941	3.71372961641832	3.3718717571212	3.63938801139186	1.58657325780951	0.00656555900801762	0.0579885748395193
Merged-chr12-17741730-4	chr12	17741649	17741849	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	50940.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	5.43287005226404	5.15588466110658	5.51096136134527	5.53154930347741	5.10417110887927	5.05614374574751	5.04243069027498	5.06341703292833	-0.652109951436945	0.0291031456746414	0.163990880777019
Merged-chr3-126598140-3	chr3	126598041	126598241	+	826.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 1 of 18)	intron (NM_001025438, intron 1 of 18)	1190.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	3.69043086740771	3.34917380655666	4.19607244361131	3.52440050876751	3.5892166657123	3.6437551434882	3.56890796087523	3.52371852425711	-0.433772503199323	0.416098067857066	0.710072021761014
Merged-chr10-98542771-3	chr10	98542664	98542864	+	791.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-190897.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	3.64622732023271	3.51326514523547	3.59305147428724	3.93868151417176	3.84851862094261	3.32662318315907	3.52398900590163	3.79308999983054	-0.145297600556171	0.781375049542574	0.914866755241407
Merged-chr2-128943917-5	chr2	128943812	128944012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020594, exon 1 of 9)	exon (NM_020594, exon 1 of 9)	108.0	NM_020594	57432.0	Mm.11675	NM_020594	ENSMUSG00000027387	Zc3h8	AU020882|E130108N08Rik|Fliz1|Zc3hdc8	zinc finger CCCH type containing 8	protein-coding	6.43226327644786	6.72403847078677	6.73636561682444	5.92769253617465	6.20441226543797	6.16563299494616	6.29366097990721	6.70438043918279	-0.1839984912997	0.514594791799424	0.777136383820736
Merged-chr9-65535390-4	chr9	65535283	65535483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44704.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	8.10272334374471	8.3991791113288	7.98974910794882	7.98162055589529	8.29328786746785	8.27526008185706	8.28804002211915	8.20335725767229	0.176727475891064	0.298373013174514	0.610488248958896
Merged-chr18-39560924-4	chr18	39560818	39561018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73673.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	7.40454767096085	7.09129874863024	7.07803162049247	7.29782853789745	7.16804948087257	6.91083109704462	7.04241082963328	7.13205011973055	-0.212839860245017	0.271936027878146	0.583524814229316
Merged-chr1-183264279-4	chr1	183264228	183264428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H2|LTR|ERVL-MaLR	-32732.0	NM_181732	108909.0	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	6.34459451199846	6.48354802825502	6.5066782772199	6.61518165470902	6.61534468349309	6.86894710226026	6.60046869187562	6.50203256169558	0.215863186692286	0.315427399068844	0.627235459025596
Merged-chr7-25703969-4	chr7	25703866	25704066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011577, intron 5 of 6)	intron (NM_011577, intron 5 of 6)	15087.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	6.77277355968762	6.99909089914436	7.18084724009166	7.04097740222235	6.81869227201249	6.52429355071395	7.13425147997247	6.49365700559927	-0.327822235786525	0.155359463522127	0.440979076070846
Merged-chr17-24886543-4	chr17	24886419	24886619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355396)	promoter-TSS (NM_001355396)	-124.0	NR_152137	79043.0	Mm.274794	NM_027141	ENSMUSG00000024160	Spsb3	2310012N15Rik|3300001M01Rik|SSB3|Tce1|mKIAA4204	splA/ryanodine receptor domain and SOCS box containing 3	protein-coding	8.86492568043212	9.09168009839899	8.68049255641777	8.4511010729356	8.98507614885592	9.10444427376883	8.64986118879016	8.74844412138519	0.118029550887479	0.542467354097015	0.793833794123973
Merged-chr11-102432239-4	chr11	102432159	102432359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008175, intron 1 of 12)	intron (NM_008175, intron 1 of 12)	1937.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	6.9554442123149	7.16011105835468	6.99432766155988	6.79917134758052	6.91486265843505	7.04063679533099	6.86966192316243	6.74485988150898	-0.111209110909388	0.582178365625332	0.816501953640427
Merged-chr2-58923787-2	chr2	58923687	58923887	+	753.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	168603.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	3.06730213366155	2.90822486877784	3.06770497066111	3.01628616014831	2.79806022961696	3.05369298073823	3.36366748754582	2.8765679646163	0.0965760300290435	0.874398406370566	0.952872975902913
Merged-chr7-28766632-4	chr7	28766523	28766723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122765)	promoter-TSS (NM_001122765)	21.0	NM_001306222	18036.0	Mm.220333	NM_010908	ENSMUSG00000030595	Nfkbib	I(Kappa)B(beta)|I-kappa-B-beta|IKB-beta|IKappaBbeta|IkB|IkBb|NF-kappa-BIB|ikB-B	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta	protein-coding	8.99366212434724	9.18193905892762	9.27755274056377	8.80238726547759	9.14088855209193	9.40315550044146	9.03860173747966	9.07305947501468	0.121803850887232	0.479232297068953	0.754970431921844
Merged-chr12-86947957-3	chr12	86947847	86948047	+	874.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173735, intron 1 of 3)	CpG	604.0	NM_001289432	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	3.40925751123309	3.18492557667876	3.25374057158244	3.33367726210991	3.06920001682407	3.05004075233431	3.00165476780968	3.19547756922198	-0.862699810463122	0.125174768182894	0.392687507570294
Merged-chr7-19179331-3	chr7	19179218	19179418	+	861.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347582, exon 2 of 22)	exon (NM_001347582, exon 2 of 22)	-1852.0	NM_001162996	72205.0	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	3.44444452334024	3.5276794561536	3.61635659955959	3.35000259553698	4.06754092345446	3.83912513341213	3.49134321717552	3.50269874670165	0.862369207646269	0.0884511717367881	0.324545902007982
Merged-chr11-54485182-1	chr11	54485082	54485282	+	659.0	f0_balb.idr	intron (NM_173753, intron 6 of 17)	intron (NM_173753, intron 6 of 17)	-37663.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	3.13014565231627	3.08004355623329	3.40653281184872	3.14747800469267	2.95077998852571	2.96730354856704	3.34161949479214	3.40444090334689	-0.0531003364734478	0.928042755043296	0.97384905516986
Merged-chr6-34479268-3	chr6	34479136	34479336	+	655.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007563, intron 1 of 2)	intron (NM_007563, intron 1 of 2)	2880.0	NM_007563	12183.0	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding	3.80728465289167	3.47710948811535	3.89348937022624	3.74545378256773	3.14773820483816	3.23494945583127	3.49539910352181	3.45007215948207	-1.38391150257817	0.0103730612974264	0.0810743527055575
Merged-chr6-124756820-4	chr6	124756742	124756942	+	857.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007881)	promoter-TSS (NM_007881)	-355.0	NM_007881	13498.0	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	4.24055876168253	4.2555852542937	4.2853763865332	4.38608273338279	4.19164236043778	4.22355883761138	3.92389903297454	4.48267214212873	-0.196465444819876	0.628236258829867	0.841427212108636
Merged-chr6-72553656-3	chr6	72553549	72553749	+	729.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271395, intron 1 of 9)	intron (NM_001271395, intron 1 of 9)	4002.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	2.92071745823233	3.01714185206981	3.11969623951864	3.00588855250634	3.32537695051131	3.16751384006081	3.22453662478838	3.53390509551663	1.16480794218037	0.0355951878949362	0.187343232710268
Merged-chr18-60792143-4	chr18	60792035	60792235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-11714.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	6.36034682532035	6.39774352166864	6.32379911004407	6.42452195412013	6.51766659783663	6.55654013326842	6.57919098593812	6.85531895704422	0.363327980541619	0.0890144916864558	0.32553884312543
Merged-chr3-108904079-4	chr3	108903956	108904156	+	929.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001356292, exon 7 of 7)	exon (NM_001356292, exon 7 of 7)	7673.0	NM_025845	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	4.83802001122543	4.34391325320162	4.65641762815672	4.79028315248942	4.66492847763667	4.31844536645055	4.84854301148514	4.86901447790433	0.0413539062392226	0.912474178005808	0.967207481621882
Merged-chr16-4839810-4	chr16	4839707	4839907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030192, intron 1 of 15)	MIRb|SINE|MIR	4391.0	NM_030192	78809.0	Mm.325551	NM_030192	ENSMUSG00000022518	4930562C15Rik	-	RIKEN cDNA 4930562C15 gene	protein-coding	7.21724543955564	6.45869391894112	7.18629223570279	7.49195517819565	6.83671461631039	6.72783606336936	7.18227251044601	7.19206807864372	-0.204799827906368	0.438080148800587	0.726246201590204
Merged-chr15-5302582-4	chr15	5302468	5302668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58381.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	6.58687000910159	6.68000881788656	6.72526276223159	6.85332403397942	6.4730079489559	6.43743424184931	6.67655615007254	6.89532209651956	-0.134401969211381	0.539270427089232	0.792058308154522
Merged-chr8-11007270-4	chr8	11007176	11007376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046017)	promoter-TSS (NR_046017)	-574.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	6.61787974383467	6.54273534671627	7.15571971012904	6.9225573570261	6.20144301616275	6.15906091251667	6.15519059340249	6.39876640101878	-0.881993043619222	0.00023013306851365	0.00407948297877465
Merged-chr15-102517195-4	chr15	102517072	102517272	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009582)	promoter-TSS (NM_009582)	-168.0	NM_009582	26404.0	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	4.38323607393154	4.51342318272094	4.47656634116312	4.818755761798	4.5548379551997	4.85487347242037	4.54223359360562	5.01225474195487	0.368498418838446	0.331230339341265	0.642422181260145
Merged-chr9-7337304-4	chr9	7337188	7337388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7109.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	6.27265402892794	6.04119526988336	5.99814185701608	6.49216860644754	5.98710708512704	5.88088889200243	5.77914486044296	5.9490899831974	-0.512581599423127	0.0446259012188293	0.215687310576156
Merged-chr16-55750201-4	chr16	55750129	55750329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71909.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	5.42427534659506	5.41236202402958	5.21061646754612	5.47593324922562	5.49743326515317	5.21125744828736	5.65066098775868	5.27208051361913	0.0585092604977155	0.839775689884361	0.939095910987713
Merged-chr4-19673171-4	chr4	19673054	19673254	+	931.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_074089, intron 4 of 23)	intron (NR_074089, intron 4 of 23)	35850.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	5.08377721309403	5.14937703989582	4.83151319377064	5.27478689879968	5.10937735480186	4.70178965775115	5.05984288178963	5.31922208906955	-0.0721955592390539	0.828327884846949	0.934164461367054
Merged-chr16-33024002-4	chr16	33023889	33024089	+	894.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178378, intron 8 of 10)	LTR41B|LTR|ERVL	32197.0	NM_178378	69707.0	Mm.227918	NM_178378	ENSMUSG00000035578	Iqcg	2400003L07Rik|G1-374-12|esgd12d|repro1|stubby12d	IQ motif containing G	protein-coding	4.61687570977296	4.27545064329567	4.06535917167324	3.976373022779	3.97048568514274	4.43593884208366	4.41151615803336	4.50680336213794	0.226687261686651	0.603420693233707	0.82809560771388
Merged-chr11-73024657-4	chr11	73024552	73024752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018883, intron 1 of 15)	intron (NM_018883, intron 1 of 15)	5644.0	NM_018883	55984.0	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	7.73037414628968	7.56247893637866	7.70046672064605	7.87330013380549	7.28255088164978	7.30782041737994	7.35118038934184	7.27697006740431	-0.563742310620038	0.00131691906254113	0.0168168248928265
Merged-chr16-32610983-2	chr16	32610883	32611083	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357298, intron 1 of 18)	intron (NM_001357298, intron 1 of 18)	1861.0	NM_001357298	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	2.1521189646833	2.32789292339156	1.99392000370385	1.94074018105542	2.14299661830752	2.4672673910513	2.35078637668947	2.42136842936464	1.5257853426304	0.0603055781551622	0.259396346839878
Merged-chr2-29935437-4	chr2	29935350	29935550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028923)	promoter-TSS (NM_028923)	41.0	NM_028923	74412.0	Mm.275121	NM_028923	ENSMUSG00000019715	Gle1	4933405K21Rik|AA553313|Gle1l	GLE1 RNA export mediator (yeast)	protein-coding	6.98004762231029	7.25552110678408	6.68938248481051	6.84634358352914	7.12271676691642	6.97135738131614	6.45310120972905	6.8038674655276	-0.127381700911594	0.59377535214042	0.823080016942938
Merged-chr5-72262166-4	chr5	72262065	72262265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 11 of 22)	intron (NR_003966, intron 11 of 22)	58822.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	7.28549447570446	7.18262550062683	7.15246359406665	7.658634441569	7.22330506097099	7.29397876339233	7.33226196623943	7.45935348879957	-0.0335841881830742	0.869659425099376	0.951055924778477
Merged-chr2-30794831-4	chr2	30794724	30794924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_198000)	TTS (NM_198000)	6913.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	5.59952003303202	5.71293502625798	5.80285870596793	5.567538750331	5.75744917328078	6.0222327667876	5.62567730294253	5.75113897795584	0.21073898704659	0.41771210744167	0.711430250427875
Merged-chr9-40241598-4	chr9	40241501	40241701	+	767.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27615.0	NM_001083917	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	4.06083732179086	3.6841008363373	3.60911680542774	3.87361485247579	3.85196317372368	3.95049243659419	3.6541184262262	4.0159199916117	0.151110723364204	0.744273522529959	0.899239415948819
Merged-chr7-114276156-4	chr7	114276055	114276255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011965)	promoter-TSS (NM_011965)	-39.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	7.86235016581255	8.09660147843	7.55155459126501	7.65320408426535	8.26874266973219	8.11372820425573	7.95296706994727	7.93083573926198	0.350668638236496	0.068929129827183	0.28056879578939
Merged-chr17-8164126-3	chr17	8164035	8164235	+	812.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1383.0	NM_001197046	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	3.30451206247342	3.21989613391055	3.25227134455938	3.05979921936629	2.86503140482045	3.12684605070114	2.87283485362436	3.195486241618	-0.769435647402784	0.195313678402893	0.496106010894639
Merged-chr2-127444595-4	chr2	127444539	127444739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029629)	promoter-TSS (NM_029629)	-74.0	NM_029629	68126.0	Mm.288676	NM_029629	ENSMUSG00000027371	Fahd2a	1500003K14Rik|B430104H02Rik|Cgi-105|Fahd2	fumarylacetoacetate hydrolase domain containing 2A	protein-coding	5.87470515862242	5.43179581310024	5.03634794679854	5.43067663544448	5.52387617167497	5.67125555360537	5.38411682419016	5.57326596270133	0.114433683373961	0.708038603180223	0.882710273980338
Merged-chr3-127780492-4	chr3	127780392	127780592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027808)	promoter-TSS (NM_027808)	35.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	8.32568746973874	8.71854439263006	8.51365402598181	8.01727100445139	8.06214710250084	8.36691460023009	8.24942660666194	7.86738865476747	-0.339182944929015	0.101728570024108	0.350047264556928
Merged-chr17-74454849-4	chr17	74454757	74454957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 1 of 8)	intron (NM_001033367, intron 1 of 8)	4251.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	5.33963174427427	5.69469654000395	5.68641767945485	5.88856747226601	5.75147664473785	5.75659066552922	5.77713373490739	5.57728746994214	0.054721334897007	0.841815873088824	0.93994803474123
Merged-chr1-127774644-1	chr1	127774544	127774744	+	1000.0	f0_c57.idr	promoter-TSS (NR_045298)	promoter-TSS (NR_045298)	480.0	NM_028399	72949.0	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	5.61954180121494	5.12035327338555	5.45757689949578	5.34331047466685	5.53925581051205	5.27358610988536	5.84325753719973	6.0434845214125	0.53780669004403	0.0818488101549588	0.310503508141883
Merged-chr13-64151743-4	chr13	64151640	64151840	+	902.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361047, intron 1 of 5)	intron (NM_001361047, intron 1 of 5)	633.0	NM_001361047	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	4.43036074925827	4.08670370289284	4.20978093338466	4.55824530201544	4.29276506575538	4.23508120112466	4.32759124947189	4.65064891774056	0.0874579504011903	0.829634573923097	0.934618333601978
Merged-chr7-83399941-3	chr7	83399845	83400045	+	758.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-184986.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	3.29970741986702	3.24401056602834	3.5744624123246	3.27859172800891	3.46496376139047	3.21454761363503	3.40357224407702	3.75531385577818	0.427449521339372	0.422604524458118	0.714839748072846
Merged-chr7-125470132-3	chr7	125470035	125470235	+	843.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360659, intron 5 of 7)	intron (NM_001360659, intron 5 of 7)	21407.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	3.18030188204665	3.44449461514075	3.18065307032921	3.03268997575757	3.87210311184862	3.36177951278594	3.75617579606042	3.53528832904955	1.51274408954948	0.00482195219518187	0.0462874895887863
Merged-chr11-78353286-4	chr11	78353182	78353382	+	832.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6572.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	4.37432249855501	4.25528171566987	4.00805164158105	3.86512485891331	4.24908499539235	4.62029095450061	3.99158431335708	4.1555696035532	0.353679414458043	0.419151386922762	0.712251159515261
Merged-chr5-99543719-2	chr5	99543619	99543819	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	MLT1K|LTR|ERVL-MaLR	185341.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	3.19661970242628	3.01953712171058	2.97906588979714	2.56268789305308	2.96304494670964	2.82454380786376	2.8447933273796	2.8530996533911	-0.34841996635401	0.598468107900047	0.825981840347031
Merged-chr1-105999198-4	chr1	105999085	105999285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	8779.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	5.08626555449694	5.37070066317412	4.94129245400171	5.65574530043126	5.27358117549806	5.08056113303874	5.16112218404883	5.08367892712116	-0.295846461676108	0.373804598444679	0.677216414469042
Merged-chr4-97936559-4	chr4	97936469	97936669	+	889.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	158943.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	4.24638039858379	3.80206975979685	4.41625300643918	4.74709418470403	4.35039340764897	3.81553208187486	4.35577641264326	4.331689485703	-0.297296955517949	0.538788271987703	0.791758581493749
Merged-chr2-79618308-3	chr2	79618195	79618395	+	941.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17130.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	4.94078296194577	4.17186260611903	4.32362858567057	4.69094199820352	3.59080710589745	4.00389808710643	3.80253044978634	3.81518221582876	-2.03930003664127	1.89307412318203e-05	0.000484701881345228
Merged-chr11-83733255-4	chr11	83733162	83733362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-13678.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	6.37914710465017	6.79505100057175	6.08818529289995	6.04056305153167	6.28033814549654	6.34961299548808	6.25797961539441	6.16849131555847	-0.136969982419774	0.604467754361596	0.828485859893348
Merged-chr9-122865938-4	chr9	122865831	122866031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173364)	promoter-TSS (NM_173364)	75.0	NM_001359935	235682.0	Mm.326477	NM_173364	ENSMUSG00000047036	Zfp445	AW610627|ZNF168|Znf445|mszf29|mszf50	zinc finger protein 445	protein-coding	6.40236473846326	6.34498518071876	6.674458163825	6.15281563856516	6.59206463740373	6.59727064258991	6.52070310293925	6.43398193761215	0.219602495318252	0.335026971999917	0.645382539647689
Merged-chr13-106829797-4	chr13	106829695	106829895	+	902.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360897, intron 28 of 30)	intron (NM_001360897, intron 28 of 30)	107163.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	4.73095299009371	4.18256935917723	4.03048111722914	4.7468493725734	4.20106174722846	3.84821738541882	4.2602499640509	4.48494244054763	-0.595216872769531	0.197415380256	0.498787070539606
Merged-chr2-92483762-4	chr2	92483662	92483862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-23244.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	6.97288830165601	7.11187261850254	7.16301727483681	6.90942128749557	6.70491212999543	7.20054351623882	6.98862628101865	6.90381934478139	-0.118214985650495	0.567748202390679	0.808331754798167
Merged-chr11-71850592-4	chr11	71850504	71850704	+	959.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	89518.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	4.52108242986722	4.25052901020509	4.87271845634079	5.24735885236328	4.87099987253539	4.29440967844945	4.84896990078654	4.90298828295238	-0.080843500002609	0.852570840175916	0.944576352517829
Merged-chr9-100525398-4	chr9	100525293	100525493	+	849.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 1 of 3)	L1M4c|LINE|L1	-18537.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	3.52469862844565	3.89414352330013	3.27267347517848	3.65779428878952	3.83906424584254	3.51899104627431	3.76829903579909	3.57950017914258	0.233288825954815	0.651536643667687	0.854017766230637
Merged-chr17-42937673-4	chr17	42937571	42937771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61247.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	5.45409331455402	5.35091719890517	5.56311490122116	5.34866426450138	5.69715000725968	5.68360611364141	5.31049044157932	5.26978858655322	0.154826236453616	0.590419960693036	0.820922828944771
Merged-chr18-6516137-4	chr18	6515997	6516197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007935)	promoter-TSS (NM_007935)	11.0	NM_007935	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	7.09496421303993	7.56324463567678	7.46214564717915	7.20769145790038	7.48323536618237	7.24875424391482	7.48870555850713	7.5294807597911	0.137099024103218	0.483491007999072	0.75784295563555
Merged-chr11-76589320-4	chr11	76589181	76589381	+	990.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11542.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	5.77125849594357	6.27060813021797	6.05995095437052	5.3688040845999	6.00077048859917	6.06597736466083	5.86059735382015	5.2569711226865	-0.11055014713419	0.739615756630791	0.897385322444781
Merged-chr12-70912059-4	chr12	70911954	70912154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25803.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	5.55608102088399	5.57914112547709	5.87760769728603	5.64968165685063	5.53582575881894	5.7050796720103	5.66134678598341	5.97763846817529	0.0907433237594022	0.736340766083913	0.895957197789619
Merged-chr15-31367431-11	chr15	31367334	31367534	+	877.4560550000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026153, exon 1 of 2)	5' UTR (NM_026153, exon 1 of 2)	325.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	4.0492700640494	4.11746248905851	4.61486980709613	3.95972213754937	3.73211313095453	3.90989921832154	3.882838260571	3.89658006452413	-0.947944186162534	0.0403626440000406	0.202965216339024
Merged-chr4-3938244-2	chr4	3938144	3938344	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190322)	promoter-TSS (NM_001190322)	161.0	NM_019969	56711.0	Mm.331467	NM_019969	ENSMUSG00000003282	Plag1	-	pleiomorphic adenoma gene 1	protein-coding	4.52608822208745	4.76337639487753	4.83370493092098	4.32979894776515	4.60121118844897	4.82382457845328	4.5062830474558	4.86398806852616	0.192586471700883	0.603443305982259	0.82809560771388
Merged-chr18-23868527-4	chr18	23868393	23868593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	64523.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	6.09740487600819	5.96869213322297	5.95075667804849	6.07583561862961	5.99509462080474	6.05740869357419	5.82816029479457	5.90096379648026	-0.124763584096915	0.598763471779887	0.826053129391413
Merged-chr5-74618690-4	chr5	74618585	74618785	+	962.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359074, intron 5 of 10)	intron (NM_001359074, intron 5 of 10)	59187.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	5.24055727890895	5.80694889286467	5.30071440174344	4.45713686756152	5.41347295893691	5.50323324805137	4.74904722968631	4.53219675843843	-0.340998138043508	0.599893501941925	0.826616767892885
Merged-chr14-75075428-4	chr14	75075323	75075523	+	967.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	55460.0	NM_027581	70859.0	Mm.320289	NM_027581	ENSMUSG00000021997	Lrrc63	4921509B22Rik	leucine rich repeat containing 63	protein-coding	4.41023618744179	5.12204857245569	4.94963299177957	4.82727877888227	4.97209669287052	4.64269096147259	5.05316207303651	4.9796604640737	0.139793903051165	0.695660949032265	0.876805160171895
Merged-chr5-77293021-4	chr5	77292923	77293123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17063.0	NM_019836	56412.0	Mm.129136	NM_019836	ENSMUSG00000036285	Noa1	2610024G14Rik|AU022345|AtNOS1|mAtNOS1	nitric oxide associated 1	protein-coding	6.45332488014868	6.55664714465313	6.36440613926149	6.76342153041753	6.46768244812036	6.83752156770241	6.72817463461363	6.34119980311416	0.0655605920482189	0.778906766779604	0.913802853320572
Merged-chr10-80677328-4	chr10	80677231	80677431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1038.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	6.29020792117518	6.02708367380774	6.11659778626902	6.15386548717673	6.26560116086108	6.25042981205544	6.34614839416173	6.11223341459606	0.150998597054201	0.504337337266511	0.770655921364685
Merged-chr4-130189124-2	chr4	130189024	130189224	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14002.0	NM_023476	94242.0	Mm.15801	NM_023476	ENSMUSG00000028776	Tinagl1	1110021J17Rik|AZ-1|AZ1|Arg1|Lcn7|TARP|Tinagl	tubulointerstitial nephritis antigen-like 1	protein-coding	3.28207370794169	3.31316540891957	3.0978283411058	3.31971467837737	3.27692454238133	3.50570164676481	3.2122775439073	3.39099819612618	0.313271951404802	0.556009328298769	0.801770385101155
Merged-chr10-4405102-4	chr10	4404997	4405197	+	732.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358796, intron 12 of 13)	intron (NM_001358796, intron 12 of 13)	-16989.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	3.49728834213951	4.01817760376732	3.62477626871261	3.71052671237581	3.81595121053391	4.20704830021531	4.14478031963142	3.89593485095538	0.812100374474397	0.0853013104327184	0.318041894659862
Merged-chr15-78174297-4	chr15	78174194	78174394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025931)	promoter-TSS (NM_025931)	-186.0	NM_025931	67042.0	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	8.93515826497011	9.02014502362642	9.08614694091415	8.80328504809141	8.86236095389041	9.15437984618994	8.99937024522782	8.8665157642172	0.0151424179496859	0.922116041393818	0.97112311110673
Merged-chr5-130278335-4	chr5	130278236	130278436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153350, intron 8 of 15)	intron (NR_153350, intron 8 of 15)	21299.0	NM_001015876	100929.0	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	5.41784975075397	5.56425856051012	5.61003328016946	5.95586957654365	5.30864937885705	5.22653188010485	5.50377131106502	5.47260690778284	-0.5052687593152	0.0853381214418396	0.318041894659862
Merged-chr14-50842697-4	chr14	50842601	50842801	+	944.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 28 of 54)	MTE2b|LTR|ERVL-MaLR	27853.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	4.62852344536559	4.68059723809767	4.81310021408483	5.28750462680935	5.75598609327639	5.22718409493479	5.6994471272489	5.54476818814952	1.20643322368035	0.000763001815277058	0.010839661348822
Merged-chr7-27244228-2	chr7	27244128	27244328	+	759.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133770, intron 10 of 14)	intron (NM_133770, intron 10 of 14)	11215.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	3.42513946961606	3.29626898602057	3.52956445310096	2.8987454001382	3.45012711615305	3.30237447870136	3.51414427967253	3.3108239328799	0.353518507959083	0.536481898987119	0.790436255725065
Merged-chr3-142496794-4	chr3	142496695	142496895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153564)	promoter-TSS (NM_153564)	-139.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	6.6621313826768	7.24719560216535	6.54186171540497	5.68950346797203	6.574597548344	6.70264186963689	6.26377705956756	5.71639535432723	-0.422043608245511	0.431483043290904	0.721710551668303
Merged-chr2-37423067-4	chr2	37422957	37423157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290642)	promoter-TSS (NM_001290642)	-154.0	NM_001290642	319817.0	Mm.288785	NM_001100591	ENSMUSG00000075376	Rc3h2	2900024N03Rik|9430019J22Rik|D930043C02Rik|Mnab|Rnf164	ring finger and CCCH-type zinc finger domains 2	protein-coding	7.92400394621775	8.18645731189448	7.53840428304153	7.79615524111959	8.23408508037358	8.48104353255114	8.17007924937343	7.95564543205041	0.43670552970318	0.0308319605800517	0.170334377687636
Merged-chr9-56744562-3	chr9	56744464	56744664	+	658.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181074, intron 2 of 6)	intron (NM_181074, intron 2 of 6)	51746.0	NM_001361118	235402.0	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	3.04167567054955	3.32781712372994	3.55903995312862	3.26963787635579	3.32077527538021	3.35012069990352	3.39482377192872	3.2957003052737	0.109536191195802	0.839050159580686	0.938856878340637
Merged-chr16-48994107-4	chr16	48993998	48994198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356425)	promoter-TSS (NM_001356425)	14.0	NM_027341	224170.0	Mm.275138	NM_027341	ENSMUSG00000064061	Dzip3	2310047C04Rik|2A-HUB|6430549P11Rik|A230104G20	DAZ interacting protein 3, zinc finger	protein-coding	7.05361018771295	6.88601851425719	7.34075650462925	7.07127097726918	6.87145271123568	6.95345826277219	6.9333817944374	6.69470827662683	-0.31614297775059	0.120256040471331	0.383860473775006
Merged-chr11-59180849-4	chr11	59180739	59180939	+	836.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080454, intron 1 of 1)	L1MD3|LINE|L1	1987.0	NM_175452	118454.0	Mm.40016	NM_080454	ENSMUSG00000043448	Gjc2	B230382L12Rik|Cx47|Gja12	gap junction protein, gamma 2	protein-coding	3.86450504254326	3.88547123348609	3.64779181235759	3.92074433634125	3.90861411241979	3.76388495709391	3.99007117163383	4.1316868643913	0.320246952746546	0.471277036788014	0.749763001969747
Merged-chr4-108327184-4	chr4	108327149	108327349	+	986.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027250)	promoter-TSS (NM_027250)	-903.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	4.35908479595317	4.5295019013032	4.35974862076163	4.48751040246598	4.72149200577022	4.44217862919615	4.42596393154513	4.21585514901502	0.0808728814768852	0.83206622097671	0.935710699145492
Merged-chr11-3187719-8	chr11	3187572	3187772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 2 of 32)	B1_Mus1|SINE|Alu	5791.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	4.86951244854755	4.39092465478853	5.19125011985802	4.17784313766127	5.02857379122217	4.97238366916115	4.73322210716562	5.44250705180799	0.717508047897068	0.0862042187070964	0.320079816554638
Merged-chr1-36059022-4	chr1	36058919	36059119	+	843.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-9381.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	4.05106390940514	3.80230261079387	4.28244186132338	4.67585918293034	3.9990741271535	4.17621797402363	4.17647965941704	4.23682496074807	-0.289189556703544	0.534049749202152	0.789066961676578
Merged-chr11-35308668-4	chr11	35308575	35308775	+	944.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011412, intron 4 of 35)	intron (NM_011412, intron 4 of 35)	187219.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	4.55153616283778	4.22797234352872	4.80684763448236	4.63283416834396	5.51806313792615	5.37311908947921	5.1472290147072	4.72417239054156	1.30051409674697	0.000490999545346819	0.00761223897078278
Merged-chr11-98963862-3	chr11	98963752	98963952	+	902.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001176528, intron 1 of 7)	intron (NM_001176528, intron 1 of 7)	-1020.0	NM_001361954	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	3.91331958577533	3.75432434299414	3.91392029806338	3.79986526464957	3.4761548513471	3.72497830787947	3.7542224706793	3.66188615151362	-0.585239854354811	0.208889347979223	0.51324523526683
Merged-chr16-85173228-2	chr16	85173145	85173345	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001198825, intron 1 of 15)	CpG	462.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	5.04210407158663	5.08194960927052	5.6512120910898	5.28960869690436	5.08341940181093	5.07114839771195	5.21413058424863	5.0745486673284	-0.326325322054366	0.303206124590998	0.615763894612189
Merged-chr10-10424555-4	chr10	10424441	10424641	+	954.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 10 of 36)	MLT2B4|LTR|ERVL	47773.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	4.09631768358319	4.58176247660336	4.75787827667377	4.95554604979692	4.95747687849523	5.03524350298067	4.8407973177979	4.4652571423663	0.400165922431001	0.331115184344405	0.642297043289104
Merged-chr2-129100994-4	chr2	129100919	129101119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009086)	promoter-TSS (NM_009086)	23.0	NM_009086	20017.0	Mm.259078	NM_009086	ENSMUSG00000027395	Polr1b	128kDa|D630020H17Rik|RPA116|RPA135|RPA2|Rpo1-2	polymerase (RNA) I polypeptide B	protein-coding	6.93114478374841	6.99397288199671	6.63058342161282	6.72782451614789	6.8870938219404	6.82397465414791	6.98328563939662	6.84841507062811	0.0879585682648902	0.662627325000118	0.860115279097678
Merged-chr4-33251914-3	chr4	33251814	33252014	+	937.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3127.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	3.89663254562751	3.65416272091029	3.65658989511927	4.13343783561999	3.45440130647719	3.54030697466029	3.47464140100905	3.48532580029875	-1.20286144872714	0.0174748551913968	0.116825652077433
Merged-chr9-50459701-4	chr9	50459598	50459798	+	995.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34827.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	5.40906477549604	4.83669954246613	4.96288912998114	4.72180584207419	5.32793983026086	4.90766070818806	4.93898257701912	5.12670141878537	0.195076456092398	0.577553323428738	0.814166268489505
Merged-chr4-139381693-2	chr4	139381593	139381793	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160319, intron 1 of 105)	intron (NM_001160319, intron 1 of 105)	1034.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	2.78739343000347	2.57440548813276	2.78782231251677	2.25110652147506	2.50264652534501	2.35597434521706	2.47130272155187	2.47803859206791	-0.860483578365788	0.256556078869516	0.568162252716061
Merged-chr18-33807044-3	chr18	33806944	33807144	+	837.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013512, intron 19 of 23)	intron (NM_013512, intron 19 of 23)	12152.0	NR_038151	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	3.98093516909605	3.90881772511083	3.64642978199559	3.88427155325141	4.01866869411653	4.0020145105087	4.60053673854011	3.87669517789424	0.775804814073597	0.0937727574816585	0.334988763100977
Merged-chr17-86142495-3	chr17	86142383	86142583	+	816.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030133, intron 1 of 20)	intron (NM_030133, intron 1 of 20)	2692.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	3.07294453184822	3.25294866714981	3.13232144148093	3.33648100146729	2.97535497066387	3.05376188783154	2.87054890584542	3.13069703904029	-0.825145711707698	0.159017689243142	0.446219364628123
Merged-chr4-105271403-4	chr4	105271304	105271504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114057.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	5.23712439007587	4.96991786831574	5.23801516201346	5.17338668928002	5.57138184824473	5.47429758675149	5.49438430211167	5.35580417435714	0.580816773602376	0.0404543247298942	0.20322523678094
Merged-chr17-24644094-4	chr17	24643963	24644163	+	792.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023055, intron 2 of 6)	intron (NM_023055, intron 2 of 6)	894.0	NM_023449	65962.0	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	3.65117678776635	3.74251156907944	3.90157720836976	3.55360481365922	3.76026426112673	3.65290038517182	3.74200068596772	3.85300402186071	0.143388720912424	0.756935482458778	0.904554066545557
Merged-chr15-79339195-3	chr15	79339102	79339302	+	860.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7419.0	NM_001304830	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	3.64615741723723	3.72784938974043	3.40870938829916	3.07511840481536	3.78514946068718	4.06296164750959	3.63161633092331	3.84580087957425	1.10564209712715	0.0363742643010829	0.189676465837859
Merged-chr10-80578583-4	chr10	80578515	80578715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1319.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	5.86096372075252	5.62782090259378	5.69030331805731	5.49605851094437	6.1026300738201	5.91741432794965	5.89867209876607	5.94628298920029	0.514840733502384	0.0418482722495951	0.207244011024416
Merged-chr15-100728750-4	chr15	100728663	100728863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172451, intron 1 of 11)	intron (NM_172451, intron 1 of 11)	613.0	NM_001161767	207839.0	Mm.22969	NM_172451	ENSMUSG00000037280	Galnt6	4632410F13|AW047994|GalNAc-T6	polypeptide N-acetylgalactosaminyltransferase 6	protein-coding	7.21749630165849	7.19246826202578	7.02965280708799	7.14252056408012	7.24453761529206	7.26861137308996	7.32732011928625	7.43438987528564	0.23157873906053	0.196973958426611	0.498290840773634
Merged-chr7-100817365-1	chr7	100817265	100817465	+	632.0	f0_balb.idr	intron (NM_178764, intron 4 of 8)	ID_B1|SINE|B4	46048.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	3.13835440028245	3.0381770715415	3.35970675366261	3.20714736330872	3.25695850480973	3.36547475426594	3.12774978774285	3.01128284665124	0.029521824946005	0.958055277710138	0.985041191005647
Merged-chr11-69654690-3	chr11	69654632	69654832	+	930.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009235)	promoter-TSS (NM_009235)	-305.0	NM_009235	20670.0	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	3.41061828458351	3.13350073701646	3.65384243940544	3.42012221397231	3.08935890857899	3.28892338219615	3.28691583946041	3.29753971906077	-0.643299968543673	0.244685470302938	0.555808536831526
Merged-chr12-26436564-3	chr12	26436505	26436705	+	965.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19847.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	4.91092602118511	5.34997683788515	5.1934610641311	5.17038680323208	3.49136296992001	3.77397288614142	3.84483731073251	4.04889811533246	-3.70525801326551	1.95781023360763e-13	2.40267197617168e-11
Merged-chr2-172437778-4	chr2	172437672	172437872	+	974.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2806.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	5.16911006107719	5.2690105886797	5.52941646106182	5.50986197720449	4.93629505872207	4.75675588944372	5.14456253089054	5.06671806412121	-0.754124211062985	0.0159592612166376	0.109479978232368
Merged-chr3-145942163-4	chr3	145942067	145942267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151445, intron 3 of 3)	intron (NR_151445, intron 3 of 3)	4153.0	NR_151446	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	5.92564281357654	5.84881467647516	5.8794048008381	6.29027710372753	6.31067308085214	5.90426417582296	6.10828037892307	6.05444032689249	0.144431522637636	0.579471172162574	0.815384290230806
Merged-chr14-57423504-2	chr14	57423404	57423604	+	665.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009376)	promoter-TSS (NM_009376)	-567.0	NM_009376	21821.0	Mm.4653	NM_009376	ENSMUSG00000040040	Ift88	AW552028|Tg737|Tg737Rpw|TgN737Rpw|Ttc10|flexo|fxo|orpk|polaris	intraflagellar transport 88	protein-coding	3.31241842244857	3.28751696759867	3.36789494220265	2.95351084798548	3.28218286944644	3.36894911953479	3.12179323928612	3.41862382075029	0.27083384349557	0.627669186333556	0.841282116569049
Merged-chr2-165034817-4	chr2	165034680	165034880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144892)	promoter-TSS (NM_144892)	-1.0	NM_144892	228869.0	Mm.233080	NM_144892	ENSMUSG00000039804	Ncoa5	CIA	nuclear receptor coactivator 5	protein-coding	6.04197670845064	6.24648739760474	6.23239889615837	5.91496985607487	6.66335249969421	6.46553848360309	6.27589686467044	6.50697344900387	0.584422055818389	0.0122356810630096	0.0911675434297041
Merged-chr4-8712433-4	chr4	8712332	8712532	+	856.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277149, intron 1 of 37)	MLT1H|LTR|ERVL-MaLR	22026.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	4.045889723842	3.70659491218071	3.85026830255262	4.00560445610616	3.72228018824766	3.97184559911824	4.30910334905794	3.94976851964128	0.238457518376519	0.60255330753	0.827751995149533
Merged-chr18-23415358-3	chr18	23415244	23415444	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010087)	promoter-TSS (NM_010087)	-65.0	NM_010087	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	3.94111172180998	4.72106442101886	4.55335043694748	4.66400537864909	3.641460495334	3.94995839321857	3.92572934162636	3.99393383226326	-1.65431540315464	0.000380931620852282	0.00617976938294739
Merged-chr11-116087583-4	chr11	116087472	116087672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347642)	promoter-TSS (NM_001347642)	-577.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	5.82953121082517	5.83626776483561	5.14392826554534	5.10252683561896	5.42759824164852	5.49115655240803	5.31889134221604	5.69253247560497	-0.0500572753390938	0.880422350964899	0.95517036814656
Merged-chr16-91880048-4	chr16	91879930	91880130	+	837.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	MLT1B|LTR|ERVL-MaLR	51600.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	3.87211784694928	3.95351352963739	4.16444202023205	4.07584352794144	4.05899218590547	3.99375831361506	4.18809160139074	4.1618368684165	0.203267828690158	0.623456671912185	0.838952007961678
Merged-chr7-49462686-4	chr7	49462585	49462785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 9 of 37)	intron (NM_175272, intron 9 of 37)	174150.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	6.76394620056047	6.96353364307269	6.82097651574621	7.18161024893992	6.85815294346704	6.52452511000291	6.27299565743856	6.59268087033883	-0.517279095895754	0.0261028999752581	0.152932613164779
Merged-chr11-110399068-4	chr11	110398986	110399186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011943)	promoter-TSS (NM_011943)	-16.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	5.83688113592282	5.49542217973882	5.43552023891543	5.78528965575479	5.83340108737786	5.58318792085081	6.26222457692241	5.83374486126662	0.400111648796283	0.161153018292026	0.449786406668417
Merged-chr11-98018947-4	chr11	98018838	98019038	+	872.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159320)	promoter-TSS (NM_001159320)	-566.0	NM_001159320	12295.0	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	3.6681439464569	3.91102986926363	3.60666873425532	3.68103295408104	4.13886163924966	4.25088474841623	3.97254614502758	4.20490685193136	1.16019230276513	0.00753181467288181	0.0643147761019092
Merged-chr6-100675120-4	chr6	100674901	100675101	+	928.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-3844.0	NM_181590	72171.0	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	3.34738555603166	3.34594641717616	3.29497822813916	2.94781788195083	2.94204269179685	3.16980042815052	3.17009360025429	3.12024547439622	-0.536256497864172	0.359718833397585	0.665443059431823
Merged-chr1-170175051-4	chr1	170174947	170175147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305045)	promoter-TSS (NM_001305045)	-83.0	NM_001305045	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	9.02317406705203	9.29126096326263	9.00700647607984	8.92290858611653	9.08918741611383	9.24353606968357	8.9811059815537	8.82380952797136	-0.0297785682500734	0.857359489734578	0.946273938640331
Merged-chr2-24367599-4	chr2	24367488	24367688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355231)	promoter-TSS (NM_001355231)	-87.0	NM_001355231	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	6.88381110360377	6.95006800466895	6.92505330862851	6.83409390366874	7.054578227799	7.00637153095541	7.1274460087303	6.8936230383973	0.181524610903343	0.335612943421954	0.645927430703489
Merged-chr17-35049767-4	chr17	35049674	35049874	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033444)	promoter-TSS (NM_033444)	-469.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	5.48723823949686	4.91870664058807	5.48818169351498	5.21214647332215	5.22548701064647	5.03544883733247	5.21697267128533	4.97139527890569	-0.309057181640553	0.33583782467814	0.646029943887149
Merged-chr6-24707304-3	chr6	24707204	24707404	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25941.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	5.3465793812147	5.68662583534007	5.15163402444114	5.67494720446745	3.83504578296785	4.68584285415436	4.52498318368898	4.09761909405209	-2.50171836150256	2.95405827974612e-09	1.7406201514408e-07
Merged-chr4-130841139-4	chr4	130840981	130841181	+	796.354187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48544.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	3.76445390421342	3.61689178377045	3.99001196699961	4.10459035988238	3.45788647588171	3.66851547951144	3.53780601665414	3.22304315657544	-1.30403678429253	0.0129113501015309	0.0945879980317894
Merged-chr7-30051376-4	chr7	30051281	30051481	+	956.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178733)	promoter-TSS (NM_178733)	15.0	NM_011748	243906.0	Mm.347644	NM_011748	ENSMUSG00000053985	Zfp14	4732429I09Rik|Krox-9|Zfp-14|mKIAA1559	zinc finger protein 14	protein-coding	5.06472871398	4.77398802121412	4.57149396734017	4.59567916184203	4.90507330592612	5.20575968612164	5.31930064083728	4.78121877526294	0.617788401834845	0.0778348509381706	0.301672031305638
Merged-chr14-66811173-4	chr14	66811080	66811280	+	883.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 11 of 13)	intron (NM_009955, intron 11 of 13)	57420.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	4.32358900744539	4.17320138264582	4.06111473974418	3.84227795081411	4.22511370992001	3.85150085338231	4.22313300465505	4.19687143508461	0.102243237488827	0.813348876160211	0.927857767644014
Merged-chr5-65703434-3	chr5	65703353	65703553	+	897.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5597.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	3.1995287641342	3.62033515061968	3.26507693407049	3.43685031768671	3.34148162765224	3.44082890418209	3.48375876071902	3.73716397060313	0.368107438202093	0.487705924420664	0.761057402147961
Merged-chr19-5599396-3	chr19	5599305	5599505	+	931.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2468.0	NM_026616	68209.0	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	4.1013387514121	3.87453781702309	4.10205807354112	4.50024160756787	2.99530297598898	3.21299788679449	3.08462618555556	3.17142256875368	-4.63810288758426	2.40756970645186e-08	1.18430134164158e-06
Merged-chr15-68011382-4	chr15	68011297	68011497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	247459.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	5.28637388481706	5.12658339604237	5.63085147936985	5.4378795587344	4.94602317115892	5.12012580956255	5.31996351549104	5.42697361050973	-0.319871974487126	0.306980244237359	0.619287657993402
Merged-chr4-148045002-4	chr4	148044880	148045080	+	953.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027809, intron 4 of 12)	intron (NR_027809, intron 4 of 12)	3791.0	NM_001161798	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	4.23701292844659	4.15429175984668	4.33060469360025	4.39408258843813	4.50405902626069	4.41268281307427	4.58914758277051	4.53422432717856	0.511612121272204	0.168825209398912	0.461297872545304
Merged-chr4-136893016-4	chr4	136892918	136893118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007574)	promoter-TSS (NM_007574)	-104.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	8.01036768915428	8.17561733773675	7.80439455077987	8.03511748796501	8.27049892437871	8.24924273697344	8.16248866294036	8.1358106394565	0.244188331773699	0.134500947217726	0.408188066939989
Merged-chr7-63822179-4	chr7	63822086	63822286	+	921.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94671.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	4.59467418189085	4.77152556024816	4.75755563828952	5.04550595462835	4.28208718482797	4.85414187584101	5.06504274223	4.86371101353531	-0.0542342703524429	0.887998355681488	0.957984130693897
Merged-chr1-172312353-4	chr1	172312256	172312456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080419)	promoter-TSS (NM_080419)	-11.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	7.2614866352733	7.73890512611913	7.49676344425066	7.29645629930971	7.22102002861713	7.06945015204342	7.19395335078985	6.91468594723692	-0.473210606119554	0.0204236730109587	0.129783748046971
Merged-chr9-14641871-4	chr9	14641748	14641948	+	960.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21174.0	NR_152172	665374.0	Mm.387249	NR_152172	ENSMUSG00000111085	Gm7607	EG665374	predicted gene 7607	ncRNA	4.57014745058881	5.45258946904941	5.21838583920865	4.87142446704723	5.02003767442655	5.16522866453486	5.48240002779653	4.87381757383341	0.160707557772616	0.664361293606623	0.860966272510256
Merged-chr8-41138692-3	chr8	41138601	41138801	+	702.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4975.0	NM_001005863	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	2.89120381458182	2.96051254683394	3.1146945396018	3.21172304796315	3.8366081817072	3.29669390061271	3.73849630006481	3.6215323863485	2.03066345286137	0.000916035113531701	0.0125630950570468
Merged-chr11-117325736-4	chr11	117325660	117325860	+	973.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-5955.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	5.17063531231324	4.99008358678205	4.69640881402748	4.90707997620504	5.38561048724773	4.99996431474338	5.31541450236647	4.934246942602	0.44793007314803	0.17116198129952	0.464261057347708
Merged-chr11-51922548-3	chr11	51922477	51922677	+	786.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45054.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	3.3989731777138	3.17485162842058	3.1275185326237	3.15092591922975	3.24681308189641	3.17472202903662	3.11652837816556	2.99904874493917	-0.277566463489349	0.620298937874768	0.837120719317978
Merged-chr7-83645645-4	chr7	83645543	83645743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 18 of 18)	intron (NM_001360088, intron 18 of 18)	9852.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	7.06970437273899	7.5820673194696	7.36517690129403	7.56232192618157	7.5190460682749	7.43727665888944	7.36814668494881	7.1757392606254	-0.0475745383819129	0.813344075870703	0.927857767644014
Merged-chr6-71444349-4	chr6	71444253	71444453	+	893.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3716.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	4.42535806179237	4.48001235007321	4.65519252221513	4.56936477522023	4.27922497906601	4.21916412612463	4.17995897288819	4.46438765456593	-0.581129106613672	0.123786789599972	0.390324101544973
Merged-chr14-21662597-3	chr14	21662491	21662691	+	764.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017479, intron 15 of 16)	intron (NM_017479, intron 15 of 16)	51985.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	3.31682626266858	3.51242928840381	3.37350297435768	3.40295401988531	3.52694803737602	3.02490459989052	3.18633496448531	3.42546090774132	-0.315222102405027	0.572427117950497	0.811251013052168
Merged-chr7-79848210-4	chr7	79848111	79848311	+	881.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008486)	promoter-TSS (NM_008486)	-1.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	4.19593311283582	4.06626054202665	4.10330996285553	4.12132964628257	4.28328008228935	4.0721373502423	4.17811201131137	4.40071790008283	0.305007370075555	0.441224430909343	0.728396857622944
Merged-chr11-69934362-4	chr11	69934269	69934469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1530.0	NM_016875	53422.0	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	4.83019376865595	4.91640548003484	4.34298320855296	4.66026855354189	4.80787993950552	4.85071990439787	5.07182719194633	5.28745523059111	0.623130472806503	0.0802724957072103	0.307122982796362
Merged-chr16-21636346-4	chr16	21636254	21636454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	58311.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	6.37731596245881	6.62306513531601	6.65977501459981	6.77030835281015	6.51027467715655	6.49910862917509	6.85435252369264	6.12950459108932	-0.144097791141312	0.551043661688428	0.798799956417849
Merged-chr19-47168368-4	chr19	47168254	47168454	+	841.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10466.0	NM_021360	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	3.89256904169607	4.29220139364468	3.89309930261747	3.83200866675103	4.25505189270134	4.22097525396543	4.12390043874586	4.22708030860516	0.580152460542063	0.167983128761039	0.459915036621355
Merged-chr11-11686211-4	chr11	11686107	11686307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001301868, exon 1 of 8)	5' UTR (NM_001301868, exon 1 of 8)	282.0	NM_001025597	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	7.39843293656271	7.52245366315958	7.55522018929244	7.77652718664866	7.70274765463528	7.94239198583464	7.79489582470732	7.72063388448922	0.272725950992421	0.130444142880829	0.402047442890558
Merged-chr11-80780094-4	chr11	80779987	80780187	+	902.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177390)	promoter-TSS (NM_177390)	-62.0	NM_177390	338367.0	Mm.151948	NM_177390	ENSMUSG00000035441	Myo1d	9930104H07Rik|AW544947|D11Ertd9e|myosin-1d	myosin ID	protein-coding	4.36042638579	4.45856880433996	4.40367197637512	4.51775084504597	4.1087313958481	4.30128901565667	4.42445091040043	4.40087945761173	-0.325757493121231	0.392412722533127	0.691933206965634
Merged-chr9-113931668-4	chr9	113931581	113931781	+	992.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001083319, exon 2 of 17)	exon (NM_001083319, exon 2 of 17)	747.0	NM_013699	22221.0	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	4.73472948240547	4.93400276658039	5.02159909170954	4.97611372651568	4.86100708578048	4.82931504319766	4.71361825146307	4.98578027350444	-0.150386333170295	0.643274625953719	0.849555525470532
Merged-chr7-116334177-4	chr7	116334085	116334285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026533)	promoter-TSS (NM_026533)	5.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	7.72755508520766	7.87589785107006	7.71222054365041	7.45250031716723	8.05690773714343	8.00185107034404	8.18205471465267	8.11102111003909	0.515897352355601	0.00312795176515501	0.033008818190062
Merged-chr4-151058094-4	chr4	151058007	151058207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009498)	promoter-TSS (NM_009498)	-154.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	8.85938590423054	9.01684116486855	8.62026053414247	8.5730521916079	8.71178561883186	8.97987708665013	8.94824318527288	8.64690769766196	0.0627195173309106	0.720312827783402	0.88825811695561
Merged-chr11-69685404-4	chr11	69685288	69685488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011614)	TTS (NM_011614)	166.0	NM_001159505	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	5.93232743352957	5.96868679500687	5.81622895875286	6.07399258807473	5.96978751204141	5.7230190019261	5.88074009285397	6.15329029911123	-0.027742789058798	0.911445321235418	0.96695373445261
Merged-chr13-9764086-4	chr13	9763971	9764171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347476)	promoter-TSS (NM_001347476)	-261.0	NM_001347476	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	5.59853208881572	5.33844169730951	5.85826138622409	5.65438418911498	6.07696552590716	6.12337330186574	6.04178648319617	6.23461798799697	0.794074312662618	0.00181469705595979	0.0216754306216854
Merged-chr18-34512065-3	chr18	34511978	34512178	+	853.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5255.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	3.29731531054317	3.06635472015326	3.40040565200094	3.98831092975772	2.70733275447319	2.81402504093249	2.77550899470439	2.70188925949783	-3.7332163875055	1.16385040669975e-05	0.000315828090348768
Merged-chr2-4969298-4	chr2	4969176	4969376	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-6846.0	NM_001311208	68527.0	Mm.27791	NM_026754	ENSMUSG00000026668	Ucma	1110017I16Rik|AW121955|Grp	upper zone of growth plate and cartilage matrix associated	protein-coding	5.73921499000109	5.51536132122953	5.71568246558613	6.00004096268375	5.54954142173007	5.31193773853539	5.89065524538538	5.82969366332667	-0.170792015172193	0.555410088808869	0.801539570806668
Merged-chr17-10372434-6	chr17	10372324	10372524	+	982.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	47822.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	4.25955371929518	4.32753002776273	4.48260468587398	4.10802409551649	4.95281815400274	4.48346777934851	4.42074804728761	4.43823896130769	0.730653353595135	0.0633015093155988	0.267018811450379
Merged-chr18-12974140-6	chr18	12973976	12974176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357396)	promoter-TSS (NM_001357396)	-384.0	NM_001357396	16210.0	Mm.8154	NM_008378	ENSMUSG00000024423	Impact	E430016J11Rik	impact, RWD domain protein	protein-coding	6.6951643364665	7.02591197015114	6.78782544146014	6.63725694982806	6.92888362565937	7.33116911280986	7.18298447326991	7.13898435738765	0.49506918076647	0.0175580302389842	0.117161623172463
Merged-chr11-67559168-1	chr11	67559068	67559268	+	690.0	f0_balb.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	26170.0	NM_008088	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	3.13427195470175	3.37169691031826	3.69936570169499	3.43466993091216	3.34476697416507	3.44481701652992	3.4877685937482	3.65058753099623	0.197706317120839	0.709423397594535	0.883531787804477
Merged-chr3-89317007-4	chr3	89316892	89317092	+	777.670837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010108, intron 1 of 4)	intron (NM_010108, intron 1 of 4)	5887.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	4.41367901765227	4.48136518318258	3.93828617717142	3.81550083469236	4.40877343473074	4.46128255958061	4.26954624593636	4.2416120216424	0.401739555465596	0.356788399794932	0.66317411451208
Merged-chr15-51865548-4	chr15	51865435	51865635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080635)	promoter-TSS (NM_080635)	-74.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	7.96267680255062	8.22796445689432	7.94253106700993	8.08525517429218	8.20710873597458	8.23716391578286	8.28590746909568	7.9299717283647	0.140922564684794	0.407578821664998	0.70380769632612
Merged-chr10-128097351-3	chr10	128097275	128097475	+	970.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054078, intron 2 of 29)	CpG	4592.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	4.10820170522891	4.3827883846925	4.52370786531752	4.16514762493608	3.97713301332092	3.76704207220067	3.99051273369935	4.58920210713851	-0.455353898548515	0.324740423385375	0.63626276514403
Merged-chr3-127633434-4	chr3	127633292	127633492	+	748.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009718, exon 1 of 2)	5' UTR (NM_009718, exon 1 of 2)	256.0	NM_009718	11924.0	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	3.66902524535008	3.52961038003564	3.71956075018351	3.43225738620262	3.67947650718011	3.62267523331517	3.43524103620845	3.76536701714403	0.164150723039526	0.735603106652782	0.895620853939579
Merged-chr13-59856556-2	chr13	59856470	59856670	+	764.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-33423.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	3.93670815281856	3.9635314825421	3.74169604017661	3.59469936920755	3.93789802075336	3.6897235908117	3.61791866249638	3.7912882625639	-0.105977788191076	0.822602469827823	0.932143478460956
Merged-chr3-31446589-4	chr3	31446479	31446679	+	895.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136260.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	4.55479061484044	4.96805410019523	4.59790869764713	4.79330708170394	4.49932243841601	4.6880900241889	4.99494840018555	4.55262492906855	-0.111972443910008	0.758684603640093	0.905260525740071
Merged-chr1-58424099-4	chr1	58424016	58424216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027853)	promoter-TSS (NR_027853)	-28.0	NM_001042634	12747.0	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	6.92606653000309	6.83218846561731	6.03254341917874	6.6782094450693	7.0949764145695	6.83937526334886	6.62831977204794	6.98364042279698	0.338353856535457	0.185891673200447	0.48382522039921
Merged-chr9-120133630-4	chr9	120133502	120133702	+	825.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3168.0	NR_002902	104433.0	Mm.453530	NR_002902	ENSMUSG00000064925	Snora62	E2|MBI-13|MBI-136|Rnu108	small nucleolar RNA, H/ACA box 62	snoRNA	3.58814561838427	4.26568120258396	3.58858018620131	3.63611062966454	4.03648558912181	4.1895156086043	3.85759827313172	4.0618339341415	0.64720773035892	0.184785272864884	0.482477933210431
Merged-chr4-117182709-4	chr4	117182623	117182823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134471)	promoter-TSS (NM_134471)	-99.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	6.11547248327855	6.02114210788407	6.15638031394197	5.76827995896506	6.00862188757143	6.27130250631847	6.1052052881381	6.22796033351159	0.225990207427038	0.356504991847724	0.662896259527929
Merged-chr6-87499999-4	chr6	87499894	87500094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-3667.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	6.49989745298318	6.46883521593413	6.38218890593516	6.68243814676758	6.10882383579967	6.28245563552241	6.54590269027085	6.24644837346074	-0.334492657375714	0.145496533286397	0.425083025193631
Merged-chr8-33929341-4	chr8	33929243	33929443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042675, intron 1 of 6)	intron (NM_001042675, intron 1 of 6)	520.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	6.99958598327103	7.88393016043686	7.43072724120017	7.1304282640386	7.96956498186134	7.89678425743872	7.60130347639516	7.26857388679965	0.407330685935444	0.109952966158271	0.366215108014911
Merged-chr17-83680433-4	chr17	83680341	83680541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-25722.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	5.8300342237793	5.76984057170467	6.07559742594238	6.2282064944285	5.93167849265993	6.00685582692473	5.82573233946166	6.14933878430465	-0.0378292567922329	0.883786215667095	0.956344438085205
Merged-chr10-10654926-2	chr10	10654826	10655026	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3c|LINE|L1	48981.0	NR_033630	382450.0	Mm.422788	NR_033630	ENSMUSG00000098065	Gm5177	EG382450	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	3.33609318894799	3.22187765550619	3.3935066579978	3.30259609160875	3.8872977231955	3.32683433553418	3.43410315547655	3.07909472345031	0.560923273902509	0.326431702458364	0.637923349237677
Merged-chr3-96503263-3	chr3	96503169	96503369	+	907.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21916.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	3.89920989166919	3.81947302244858	3.41206389261274	3.97551960011413	3.75950932142831	3.59095128626037	3.69052944975495	3.70322869872135	-0.340637877303373	0.487020082883411	0.760510782316666
Merged-chr18-34259315-4	chr18	34259230	34259430	+	939.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360979, intron 1 of 15)	B3A|SINE|B2	11636.0	NM_001360979	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	4.38177298363789	4.8285772726259	4.33185773193364	4.8095306250345	5.09229955312118	4.65619435133819	5.03678171476048	4.68781675118638	0.549017761915119	0.14869357970705	0.430623334281394
Merged-chr5-114772063-4	chr5	114771967	114772167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077359, intron 1 of 18)	intron (NM_001077359, intron 1 of 18)	1424.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	5.95572468844478	5.59793199051907	5.4036694720879	5.49952041958225	5.4649887064988	5.57971742348889	5.5184157611138	5.30609784762992	-0.262479094174936	0.359642162351386	0.665443059431823
Merged-chr11-75538119-3	chr11	75538060	75538260	+	787.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	6048.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	3.48646280823034	3.34148170506386	3.48701104400042	2.88280615737081	3.08430387094409	3.33332512991208	3.08340226448593	3.02556834310581	-0.683111830696513	0.262401244351409	0.574213981359762
Merged-chr8-120101410-4	chr8	120101304	120101504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133967)	promoter-TSS (NM_133967)	68.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	6.63286324547677	6.5423673809878	6.69597952661174	6.90900396813995	6.80751122044759	6.60570530702859	7.04724532335325	6.84722806163208	0.173496809738727	0.42286354622429	0.714933300428204
Merged-chr10-7923645-4	chr10	7923552	7923752	+	948.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359534, intron 2 of 6)	intron (NM_001359534, intron 2 of 6)	29413.0	NM_001359534	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	4.94705047254521	4.97085011416622	4.69328949078813	5.13458876477976	5.01682140481282	4.65396388092068	4.45526326521536	4.5636834438412	-0.51378966768443	0.160794955470564	0.449114116129306
Merged-chr10-81218244-4	chr10	81218161	81218361	+	796.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178662, intron 3 of 12)	ORR1B1|LTR|ERVL-MaLR	12518.0	NM_178662	16467.0	Mm.127681	NM_178662	ENSMUSG00000034958	Atcay	3322401A10Rik|BB077577|BNIP-H|CLAC|hes|ji	ataxia, cerebellar, Cayman type	protein-coding	4.01562483669543	4.02142953479141	4.06481941420839	3.48980418588691	4.0501339218738	4.41233709481155	4.13789569621838	4.15420291531264	0.766025289028186	0.0931964229334638	0.33395228493662
Merged-chr5-66114320-4	chr5	66114200	66114400	+	941.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-16121.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	4.39351734736456	4.58802809172122	4.57257503168043	4.71916653250542	4.94469082382059	4.61770422660111	4.55173966600794	4.89783094161943	0.395790827171194	0.270159062373286	0.581976027500398
Merged-chr17-50181159-3	chr17	50181073	50181273	+	888.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	9324.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	3.78371745765286	3.83535904944496	3.87811811647952	3.86586261269572	3.83715971429549	3.20802850778133	3.55961665784757	3.62710305710875	-0.774880349250982	0.136942020837248	0.411508257743677
Merged-chr14-52446123-2	chr14	52446047	52446247	+	718.25	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-4246.0	NM_020514	57271.0	Mm.88824	NM_020514	ENSMUSG00000035626	Olfr1509	MOR244-3|Mor83|Or83	olfactory receptor 1509	protein-coding	4.06766407611238	3.80195639260953	4.45327586246846	4.40762263910853	2.87352991142653	3.12229618342415	3.07706880454431	3.24181438563845	-5.61576854958272	3.04807311695897e-08	1.46494798374087e-06
Merged-chr17-28251773-3	chr17	28251686	28251886	+	970.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	19032.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	3.91131597044528	4.21983283214358	3.75684084096826	3.80924600073717	4.06670485451482	3.87625219917933	3.7422367781811	3.69883479637156	-0.202800340121671	0.663727344135938	0.860721584082956
Merged-chr11-29707750-7	chr11	29707661	29707861	+	796.3095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_194051, exon 3 of 9)	exon (NM_194051, exon 3 of 9)	-10802.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	3.44162770796104	3.2662277731194	3.60124708791245	3.20166260706297	3.20064682738109	3.61487171724074	3.53533650661899	3.64790569552593	0.43565189667686	0.41434835474179	0.709044594374843
Merged-chr5-100500796-4	chr5	100500690	100500890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172714)	promoter-TSS (NM_172714)	-151.0	NM_001359914	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	7.67131144567237	7.97918225457976	7.3200516082238	7.33578337647666	7.86495128290477	7.94579773180681	7.76097738725722	7.3896717994465	0.203450730951023	0.363639641494267	0.668649715510373
Merged-chr12-79023093-1	chr12	79022993	79023193	+	653.0	f1_c57bl6.idr	Intergenic	Intergenic	-6070.0	NM_181073	211945.0	Mm.478321	NM_181073	ENSMUSG00000060716	Plekhh1	AV308913|C77772|D630024D12Rik|mKIAA1200	pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	protein-coding	3.05353453853836	2.78168288833098	2.99810603715232	2.67681951935546	2.59153672229236	2.70819917098484	3.09375974807513	2.93808869557654	-0.157096001954723	0.813102084609745	0.927794057076579
Merged-chr8-39655648-2	chr8	39655552	39655752	+	671.625	f0_balb.idr|f0_c57.idr	Intergenic	Lx7|LINE|L1	-12974.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	4.15012554970388	3.8981696807831	4.319784521051	4.22270905247058	3.98636960152393	4.0245558402372	3.88689554430937	4.35581677250645	-0.21948537375506	0.61105652559472	0.83217032290492
Merged-chr11-19925234-2	chr11	19925134	19925334	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	CpG	792.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	5.72710857704705	6.33527932517651	6.17617943984343	6.03838036297221	6.3534955093281	6.33189659128382	6.37826354145765	6.1914653849227	0.347041483109348	0.153314335718848	0.437898153186247
Merged-chr10-61696058-3	chr10	61695957	61696157	+	960.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001272090, exon 1 of 4)	exon (NM_001272090, exon 1 of 4)	471.0	NR_073587	71767.0	Mm.71514	NM_027912	ENSMUSG00000020087	Tysnd1	1300019N10Rik	trypsin domain containing 1	protein-coding	4.20974223734072	3.82676607688489	4.29052685302917	3.73200228366999	3.71742614796996	4.00523803824299	3.967546395996	4.20766820749483	-0.117159569653093	0.8030861077888	0.923989034972282
Merged-chr11-113649565-4	chr11	113649494	113649694	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013581)	promoter-TSS (NM_013581)	65.0	NM_013581	16834.0	Mm.261620	NM_013581	ENSMUSG00000018661	Cog1	6030445I15|Ldlb|mKIAA1381	component of oligomeric golgi complex 1	protein-coding	4.96993806936877	4.8582692065752	4.76055856134681	4.56988317125502	4.60184126962948	5.14113890103805	4.61950574116609	4.75740865512919	0.00883851958258906	0.980372365002054	0.99281244474172
Merged-chr15-99032282-7	chr15	99032197	99032397	+	916.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009448, intron 1 of 3)	intron (NM_009448, intron 1 of 3)	2406.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	3.67608136112744	3.81620862802584	3.51361726175828	3.39307639267602	3.57764881975875	3.56990715977396	3.66134678871337	3.72442796145062	0.104276493196276	0.831246330499554	0.935322338382222
Merged-chr9-50856964-4	chr9	50856867	50857067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034085)	promoter-TSS (NM_001034085)	43.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	6.5446882370517	6.6063046601367	6.47953030106316	6.62408617337415	6.36173910216651	6.6556292943166	6.5751085593155	6.44041382627336	-0.0951705503442431	0.65186359339633	0.854226093384343
Merged-chr14-118137037-4	chr14	118136937	118137137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021434)	promoter-TSS (NM_021434)	-90.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	8.85543400476965	8.89376893577033	8.71285619179512	9.01975427937076	8.74890809781481	8.92062856317698	9.11233532082072	8.7030104863202	0.000794198749305124	0.996151553656138	0.998563054228531
Merged-chr6-84737143-4	chr6	84737037	84737237	+	905.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 20 of 21)	intron (NM_177077, intron 20 of 21)	-143229.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	3.73583844704327	4.02868667026906	3.67783744919071	4.26558573718792	3.8346232327738	4.11782881328982	4.10967299947201	3.73435954790396	-0.0270763508532884	0.95531851754719	0.984075265351039
Merged-chr6-72402051-4	chr6	72401954	72402154	+	975.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-11387.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	5.43599437426461	5.3237635507215	5.29690088597002	5.32547794091532	5.26124198684979	5.17500756212583	5.29966486794315	4.83555424329836	-0.336785369765278	0.262339530537403	0.574184848071147
Merged-chr17-7420361-3	chr17	7420263	7420463	+	942.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35058.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	3.49885012090725	3.42681808700894	3.49931229910023	3.12010309908754	3.84709088097275	3.73239565486448	4.00655261877348	3.66359164963453	1.42094853172933	0.00421914042207607	0.0418090207577547
Merged-chr17-45598031-4	chr17	45597948	45598148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199115, intron 1 of 12)	intron (NM_001199115, intron 1 of 12)	1555.0	NM_001199115	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	6.52882994034426	6.55300514744844	6.24388301858093	6.1512273746315	6.57772080954323	6.72113863235608	6.46433667119707	6.27890656657987	0.222242214499838	0.344824085079293	0.653258638131028
Merged-chr11-76506984-3	chr11	76506882	76507082	+	855.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198018, intron 1 of 21)	intron (NM_198018, intron 1 of 21)	2437.0	NM_198018	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	3.8765415322789	3.45891109825907	3.42166194164554	3.41082754563807	3.65631191237121	3.47396835474433	3.57767521577443	3.69229049196771	0.183699952544588	0.714609364074735	0.885936878208722
Merged-chr5-3490565-4	chr5	3490463	3490663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-53270.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	6.81487264517938	6.72169118232162	6.59273874923594	6.68021596705226	6.75539208066109	6.76958177572952	6.98176535001584	6.53823132658347	0.0961045053332513	0.644000937460579	0.850073116376874
Merged-chr6-97496193-4	chr6	97496127	97496327	+	816.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-8407.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.73421995122953	4.60002086234146	4.13054898944802	3.95458258312313	4.63584799000235	4.39820023073602	4.25047147713199	4.07821178709378	0.526093286391651	0.260126523534668	0.571901621080305
Merged-chr6-31215236-3	chr6	31215143	31215343	+	804.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	3231.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	2.9467480709134	3.0475267144326	3.1746046008726	2.79184241286025	2.65716803704805	2.92517376259085	2.8736890256396	3.11957849590406	-0.398675593445919	0.530793357150782	0.786856644791047
Merged-chr5-63970588-7	chr5	63970514	63970714	+	998.880981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-1717.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	5.19551350809718	5.12578382549442	5.25865809490779	5.06567578839407	5.35058750549475	4.96826036294605	5.45308126154443	5.3982654448752	0.287840597782787	0.336694971530113	0.646629460254283
Merged-chr18-34931476-1	chr18	34931376	34931576	+	1000.0	f0_balb.idr	intron (NM_144866, intron 2 of 10)	CpG	527.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	4.95239549855769	5.63417591819193	5.55124901257385	4.85331646412724	5.33514837356327	5.62005473634871	5.00666268730085	5.5964731714844	0.219457594037946	0.539863734023273	0.792406302070178
Merged-chr18-11691043-3	chr18	11690944	11691144	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 4 of 18)	RLTR13B1|LTR|ERVK	33695.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	3.8624447400522	3.83441700193343	3.99659505104013	3.12844585830697	5.61668660237361	5.3537938569708	5.1234706341987	5.14752814359251	3.94026317180668	4.1111234863957e-19	1.23587337743603e-16
Merged-chr12-99874837-3	chr12	99874740	99874940	+	893.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030172, intron 3 of 5)	intron (NM_030172, intron 3 of 5)	8602.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	3.59829678748997	3.26777886084543	3.54694800278989	3.7795187141527	3.35546788788095	3.55087896077658	3.4237352248294	3.54495928093074	-0.346075106839256	0.506210532966541	0.771888853855569
Merged-chr5-53594540-1	chr5	53594440	53594640	+	913.1666869999999	f0_c57.idr	intron (NM_001359152, intron 1 of 9)	intron (NM_001359152, intron 1 of 9)	4054.0	NM_001080927	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	4.37802804233133	4.11051713333687	4.14394860309312	3.64873741142217	4.63520395881102	4.78366026229909	4.555045547603	4.37588552129124	1.24073158654885	0.00341140564957465	0.0353142005135361
Merged-chr1-36691455-4	chr1	36691356	36691556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009942)	promoter-TSS (NM_009942)	-31.0	NM_009942	12859.0	Mm.180182	NM_009942	ENSMUSG00000061518	Cox5b	-	cytochrome c oxidase subunit Vb	protein-coding	8.13480720540951	8.47388211387123	8.08476046991118	8.09765379693755	8.1544641526887	8.39305504920166	8.23979074982985	8.19211711634022	0.0482730469339333	0.778674927720013	0.913781420202775
Merged-chr2-165445122-4	chr2	165445032	165445232	+	925.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054055, intron 3 of 12)	intron (NM_054055, intron 3 of 12)	28065.0	NM_054055	114644.0	Mm.250738	NM_054055	ENSMUSG00000018459	Slc13a3	NaDC-3|NaDC3|SDCT2	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	protein-coding	4.38423177821482	4.62860976659128	4.78270471182007	4.28092032821206	4.61397640441779	4.3663145331153	4.49698971992641	4.96878302213652	0.2422778698088	0.534687333612716	0.789317247427661
Merged-chr7-25768867-2	chr7	25768767	25768967	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 12 of 19)	PB1D10|SINE|Alu	-14108.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	3.52193835259245	3.2862602693765	3.999680387384	3.186682119541	3.09159271558579	3.47123536871056	3.39882350465928	3.22683348988259	-0.789978560381652	0.182396178158152	0.478874905577776
Merged-chr4-24597141-4	chr4	24596997	24597197	+	954.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149739, intron 22 of 24)	intron (NR_149739, intron 22 of 24)	100646.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	4.52327750581178	4.64441883262686	4.92771026911225	4.77980382433806	4.32878368874145	4.65596250519425	4.73720223364358	4.60460937591775	-0.323491415760446	0.372175285659994	0.676099595682082
Merged-chr12-4236515-4	chr12	4236417	4236617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001204912, exon 2 of 2)	exon (NM_001204912, exon 2 of 2)	2490.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	6.24545807963494	6.31159675422032	6.30301863649808	6.42915326841366	6.06048377724514	5.85524667064102	6.72567330024676	6.29850226255624	-0.0802508371778102	0.762043583069238	0.906776947564005
Merged-chr11-69060452-6	chr11	69060352	69060552	+	919.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028005, exon 1 of 1)	exon (NM_028005, exon 1 of 1)	677.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	3.74690913087203	3.86338081530313	3.90019185229342	3.44112712715766	3.59597060713498	3.97430266409084	3.56153878949776	4.26871798825892	0.394459154102831	0.439674582111081	0.727425871224001
Merged-chr14-121878474-4	chr14	121878382	121878582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131000)	promoter-TSS (NR_131000)	22.0	NR_131000	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	8.66944304002214	9.12579271239567	8.83741067100722	8.75629872013332	9.10770834128156	9.20451224537276	9.17960804162299	8.72768518995749	0.260563983483513	0.145595610397733	0.425250305806328
Merged-chr7-75653875-3	chr7	75653790	75653990	+	637.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	-194448.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	3.48086794578901	3.63248219840528	3.42243246799572	3.71829513153317	3.57570780762606	3.81123683473428	3.62840132084583	3.29478340139615	0.0320845186193452	0.9498937871354	0.982125849752489
Merged-chr2-120494839-4	chr2	120494739	120494939	+	883.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001177799, exon 10 of 21)	exon (NM_001177799, exon 10 of 21)	17930.0	NM_001109761	12335.0	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	4.64000529734489	5.02808401156143	5.23272297763337	4.5014882380773	4.82880613081832	4.45947501846475	4.30906285985234	4.10724587951883	-0.882497067649635	0.0419150417886431	0.207440670107991
Merged-chr7-44997293-4	chr7	44997208	44997408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016849)	promoter-TSS (NM_016849)	271.0	NM_029410	75736.0	Mm.261006	NM_029410	ENSMUSG00000003190	Bcl2l12	2810475P17Rik|5430429M05Rik|Bcl-L12|Bcl2-L12	BCL2-like 12 (proline rich)	protein-coding	6.34449369505964	6.09404939930034	6.27197598874224	5.84103832342376	6.44051183373705	6.65581904494009	6.34814930025747	6.37630746016387	0.492653487363515	0.0413173838947547	0.205774563968986
Merged-chr11-5261222-1	chr11	5261122	5261322	+	837.0	f0_c57.idr	intron (NM_032396, intron 1 of 8)	CpG	388.0	NM_032396	84035.0	Mm.209989	NM_032396	ENSMUSG00000020393	Kremen1	AV002070|Kremen|Krm1	kringle containing transmembrane protein 1	protein-coding	4.30356135815924	3.91233027286849	4.25988129412237	4.15377885932272	4.45970483268886	4.43219339185397	4.40801406673005	4.30152556775326	0.587811349920628	0.130512496254044	0.402130363128451
Merged-chr2-136919558-1	chr2	136919458	136919658	+	546.0	f0_balb.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	20207.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	3.37128315233819	3.72946138955008	3.3717421576896	3.23964776589261	3.06286032335716	3.42875440606887	3.1152658928599	3.4248387782055	-0.627341928079653	0.269558714578554	0.581238507864386
Merged-chr12-32001853-1	chr12	32001753	32001953	+	554.0	f0_balb.idr	intron (NM_011158, intron 2 of 10)	intron (NM_011158, intron 2 of 10)	-51608.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	2.25097742141218	2.21111549126454	2.67326247070355	2.47467949762901	2.4244456182583	2.71960762639506	2.72055672576402	2.73056782425485	1.23194536300396	0.110323589319651	0.366801750900448
Merged-chr11-69662755-4	chr11	69662664	69662864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301710)	promoter-TSS (NM_001301710)	-115.0	NM_011900	24070.0	Mm.89579	NM_011900	ENSMUSG00000018761	Mpdu1	LEC35|SL15|Supl15h	mannose-P-dolichol utilization defect 1	protein-coding	7.93183266506645	8.11396351178512	7.98222562970898	7.82902195285437	8.28302524703551	8.05216291726115	7.9508093520924	7.91344448325894	0.128692069750607	0.46151556136069	0.743289746901092
Merged-chr9-66114498-4	chr9	66114400	66114600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019727, intron 1 of 14)	intron (NM_019727, intron 1 of 14)	10386.0	NM_019727	56440.0	Mm.271891	NM_019727	ENSMUSG00000032382	Snx1	-	sorting nexin 1	protein-coding	6.06606383938848	6.68829287148884	6.31722685067083	6.02927485330923	5.90253696570115	5.93455009326017	6.01473371732222	5.99733768009403	-0.520279084666507	0.0489306671986099	0.228697613798007
Merged-chr10-12869414-4	chr10	12869300	12869500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7665.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	6.66304541051553	6.76168173030332	7.20931454593581	7.05277826547024	6.3444254869614	6.85663777206095	6.31606741839553	6.85979783733184	-0.468225880837708	0.0587943916317084	0.255279359545015
Merged-chr7-41599241-4	chr7	41599155	41599355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-34276.0	NM_001360675	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	8.12346846578453	8.02694006828806	7.84895439960431	7.7586394602537	8.15007508922415	8.07204394625999	8.20391897224406	8.29778862176015	0.312581956915299	0.0654024841924245	0.272266249099056
Merged-chr2-157094086-3	chr2	157093963	157094163	+	990.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177439, intron 4 of 5)	intron (NM_001177439, intron 4 of 5)	7008.0	NM_001177439	383766.0	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	3.99470240534144	4.0294813040938	4.13060951189707	3.95261894324618	3.43564888258445	3.85392864770869	3.77453802160829	4.32512138178611	-0.392156005519062	0.427944315574133	0.719041213150412
Merged-chr7-6241034-3	chr7	6240940	6241140	+	862.6166380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11670.0	NM_001177416	627821.0	Mm.99441	NM_001177416	ENSMUSG00000053367	Epp13	EG627821|Eddm13|Gm6792	epididymal protein 13	protein-coding	3.89067071404659	3.91915997879472	3.52507378226603	3.79891973798849	3.52077606946655	3.37312708769955	3.96073090730353	3.74468286512633	-0.378679653435377	0.45372971757608	0.737638651163466
Merged-chr4-44756646-4	chr4	44756530	44756730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138590)	promoter-TSS (NM_138590)	71.0	NM_138590	319885.0	Mm.331576	NM_138590	ENSMUSG00000035649	Zcchc7	4930572I07Rik|D4Wsu132e	zinc finger, CCHC domain containing 7	protein-coding	7.93777312737865	7.8381584607292	7.54496548735221	7.92137882380024	7.97007346200341	8.20500692135891	8.320384834486	7.79227110642572	0.338094742947642	0.0788552378310568	0.303929244034701
Merged-chr10-71306376-3	chr10	71306278	71306478	+	858.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-4367.0	NR_152791	102637684.0	Mm.338906	NR_152791	ENSMUSG00000093732	Gm20609	-	predicted gene 20609	ncRNA	3.98297494675684	3.6950330920351	3.93590171016491	3.67332549248589	4.24233733072152	3.84434230206008	4.01174512676356	3.98116567859307	0.624698088196182	0.160450076280735	0.448621443584546
Merged-chr7-27553906-2	chr7	27553806	27554006	+	746.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011116)	promoter-TSS (NM_011116)	616.0	NM_175107	66367.0	Mm.29831	NM_175107	ENSMUSG00000049643	2310022A10Rik	-	RIKEN cDNA 2310022A10 gene	protein-coding	3.27452182557425	3.45110291133093	3.39166613736125	3.18530373251745	3.35519834383353	3.50645398463127	3.20167396651879	3.59523340042815	0.344211238819904	0.513121698988677	0.776203710892061
Merged-chr4-88696629-4	chr4	88696526	88696726	+	979.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5358.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	4.79092370536083	5.22980582976356	4.86726522848975	5.00667884192935	4.78432918022863	4.96647772429928	4.73016979412058	4.93528525765587	-0.275192898960171	0.40507993339974	0.702085545628266
Merged-chr5-20860716-4	chr5	20860596	20860796	+	816.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 1 of 17)	intron (NM_172992, intron 1 of 17)	21428.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	4.00219037646504	3.6645257212595	3.80063829381556	4.30333856885861	3.94566056384378	3.8050039061708	4.03088623665793	4.04621079715871	-0.0646052678976293	0.891213621056001	0.959288098550451
Merged-chr17-87140924-1	chr17	87140824	87141024	+	578.0	f0_balb.idr	Intergenic	Intergenic	33245.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	2.86429601815411	2.89529764445559	2.80718785694908	2.64898887785606	2.51687272552404	2.65181570853123	2.54058113033653	2.61626917942228	-1.15981130558816	0.0878190771285167	0.32328194137502
Merged-chr3-67557926-2	chr3	67557824	67558024	+	788.083374	f0_balb.idr|f0_c57.idr	Intergenic	Lx8|LINE|L1	-24844.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	4.08079096477975	3.96666939841724	3.63737763988431	3.90656666218649	5.31426199954007	4.50815552422068	4.39624220157147	4.74817131954493	2.08106264165018	4.11860615247821e-06	0.000125120899414104
Merged-chr5-138262270-4	chr5	138262159	138262359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153161, exon 6 of 11)	exon (NM_153161, exon 6 of 11)	-1786.0	NR_045821	69004.0	Mm.439868	NR_045821	ENSMUSG00000085227	6330418K02Rik	-	RIKEN cDNA 6330418K02 gene	ncRNA	6.11878523954259	5.61515437620877	5.95957319615075	5.96341231097335	5.47537241807536	6.06824613173636	5.72158579110219	5.79610926019477	-0.251284373583383	0.364658483419917	0.669418326490594
Merged-chr16-94724421-4	chr16	94724236	94724436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112917.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	6.16623268983575	6.17676563229531	6.12867256038031	6.02583081516063	5.60591542187031	5.86526457258683	5.97432502606283	6.14374350408033	-0.345508095206893	0.171193728353557	0.464294934178781
Merged-chr1-191182531-4	chr1	191182407	191182607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007498, intron 1 of 3)	CpG	826.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	6.61433492267689	6.70185149910714	6.61550028670948	6.6493763079944	6.7847985000262	6.91250434648562	6.75849299865718	6.57862110011013	0.166239791566968	0.409087783221472	0.704791463679563
Merged-chr6-106797594-1	chr6	106797494	106797694	+	564.0	f0_balb.idr	intron (NM_175357, intron 1 of 10)	MER20|DNA|hAT-Charlie	2493.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	3.21320529826397	3.66041292967331	3.63387582269378	2.97251658785935	3.49403082110216	3.26335245359036	3.13937233589662	2.93869893429917	-0.613159222671317	0.336228670112745	0.646323334572005
Merged-chr11-21239145-6	chr11	21239053	21239253	+	974.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_139061, exon 1 of 23)	5' UTR (NM_139061, exon 1 of 23)	121.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	3.64452060938686	3.72454477946591	3.59047140965387	3.31719016500048	3.97875865030505	3.8167062450197	3.68196272262713	3.41019207036803	0.544790725442431	0.282422708363474	0.594592148794809
Merged-chr2-155100867-4	chr2	155100797	155100997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040634)	promoter-TSS (NR_040634)	-818.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	5.84682592764374	5.54899093949692	5.93972321722355	6.03031673613664	5.67373892662738	5.79183888088581	5.86449039365602	6.49641616530038	0.215031768443778	0.473026200309727	0.751004143563305
Merged-chr13-50417887-4	chr13	50417790	50417990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175401)	promoter-TSS (NM_175401)	26.0	NR_154273	109082.0	Mm.18638	NM_175401	ENSMUSG00000037816	Fbxw17	1110064L07Rik|C85886	F-box and WD-40 domain protein 17	protein-coding	5.87660962862133	5.83910202107241	5.62033161454265	6.17044820605817	5.7537770967787	5.95710136624641	6.22457850132478	5.87346195475886	0.0754456573883529	0.78252144173529	0.91529005173258
Merged-chr12-73907872-4	chr12	73907756	73907956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010431)	promoter-TSS (NM_010431)	-11.0	NM_010431	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	8.75881833221714	8.40620436446164	8.45828484811137	8.49412573607724	8.57510855460618	8.56791492556544	8.54022925258919	8.45789984012182	0.00336218848447506	0.982862546709248	0.993865312500427
Merged-chr12-33147685-4	chr12	33147586	33147786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015602)	promoter-TSS (NR_015602)	0.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	8.17970057257519	8.18623986887629	7.92120060181302	8.06654054993899	8.00422422445688	8.02421025437014	7.88321689005665	7.87188484523148	-0.185712712479287	0.252580202468485	0.563851536192701
Merged-chr7-19849786-4	chr7	19849647	19849847	+	898.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2256.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	3.98302443238662	4.06337231471843	3.8290278741587	3.94616624723591	4.13235898225647	4.15440091907993	3.7589585149191	4.07471269406554	0.224893305553709	0.600716953692594	0.826921018931019
Merged-chr18-84086659-4	chr18	84086569	84086769	+	968.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081300)	promoter-TSS (NM_001081300)	-107.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	4.76305275283225	4.65272200913395	4.90218325663935	4.80337509453409	4.71190087246987	4.56124940795824	4.62734648430991	4.76068403286301	-0.238362425715882	0.480699551554227	0.756081526054677
Merged-chr1-136551122-2	chr1	136551025	136551225	+	729.650024	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-73776.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	3.9340405073862	3.44920212678679	3.78999416507987	3.65369234423121	3.78995480893046	3.9103849938782	3.91713352241982	3.78779242767388	0.409933407968917	0.375710059661465	0.678595291948235
Merged-chr10-119063583-4	chr10	119063502	119063702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13103.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	7.58114426270762	7.37018740615999	7.69506066154354	7.92369855632853	7.70489630706178	7.98333491546289	8.02661567244373	7.71441312010699	0.254212405816602	0.199954821561404	0.50185984431534
Merged-chr1-86500048-4	chr1	86499931	86500131	+	843.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26526.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	3.56830695382092	3.92011074810996	3.83580778241474	3.96484042920567	3.65103278388629	3.85307194778101	3.72037875473782	3.67987628859611	-0.350173455555755	0.45307918103705	0.737250667901997
Merged-chr5-5320346-4	chr5	5320256	5320456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-54288.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	5.66426895532631	5.5478235978413	5.77273325369621	5.73915620684872	6.63801284586525	6.00067272336335	6.34333122675994	5.98158977135384	0.938451032548442	0.000503801902693719	0.00776192979044074
Merged-chr2-128128072-4	chr2	128127974	128128174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284410, intron 1 of 3)	CpG-8520	499.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	6.98502586509825	7.03021281624352	7.31432816194484	7.19587934994172	6.99832766488642	6.68347815606324	6.73380180037956	6.65478193663623	-0.492521475570686	0.017212375603557	0.115594386743337
Merged-chr3-51183730-4	chr3	51183624	51183824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-40723.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	6.66121806478312	6.28791919489524	6.79182952556226	6.76229231529602	6.59096084460648	6.49410434488411	6.88639471330936	6.75938938805565	0.0657675308334841	0.77273725841546	0.911047410543687
Merged-chr4-32555759-4	chr4	32555662	32555862	+	991.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 2 of 4)	L1MA9|LINE|L1	15900.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	6.37764366283304	6.36931021493804	7.21336572582466	7.40682372027782	6.1027616594718	5.52115955470995	6.53361205961981	6.49741012699778	-1.01953563408599	0.0500997720257268	0.23205906637725
Merged-chr8-18936896-4	chr8	18936792	18936992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176951, intron 6 of 6)	(CAAAA)n|Simple_repeat|Simple_repeat	13979.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	6.36741700293351	5.85414392093608	5.85121186647273	5.80048128702003	6.27280612185011	6.54303018887916	6.3525859017031	6.27617115278313	0.590901852941871	0.0189199237023583	0.123245286831716
Merged-chr2-28621906-4	chr2	28621819	28622019	+	950.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008114)	promoter-TSS (NM_008114)	63.0	NM_008114	14582.0	Mm.373385	NM_008114	ENSMUSG00000026815	Gfi1b	Gfi-1B	growth factor independent 1B	protein-coding	4.34425372819481	4.4978047632367	4.43481121798478	4.31481610066312	4.66840351712776	4.27157664216924	4.53760519194712	4.89805761883007	0.500775666721251	0.182862904234994	0.479622619962511
Merged-chr11-54068268-6	chr11	54068172	54068372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019417, intron 1 of 6)	intron (NM_019417, intron 1 of 6)	745.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	4.99485195254999	5.59896972691639	5.41048227115592	4.83751827825294	5.26083337561533	5.31406928650707	5.46168397653038	5.06545658833661	0.0840165579304618	0.805147811872235	0.925171083261684
Merged-chr6-115803626-3	chr6	115803534	115803734	+	811.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025958, intron 14 of 14)	intron (NM_025958, intron 14 of 14)	4469.0	NR_028546	100217451.0	Mm.484708	NR_028546	ENSMUSG00000064563	Snora7a	MBI-141	small nucleolar RNA, H/ACA box 7A	snoRNA	3.51468752229644	3.37942073764111	3.40780501776253	3.16962858798928	3.39963386027636	3.05419789020138	3.59818110577243	3.61198400437971	0.238823334576571	0.665257278733814	0.861320791391846
Merged-chr1-91046412-4	chr1	91046277	91046477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-7067.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	7.03117246676589	6.89599522794718	6.65689872663211	6.8087522851754	6.95659204663809	7.12172997025115	7.04391842336082	7.00317818804081	0.245804653765936	0.208520953799268	0.512900441304793
Merged-chr1-87230659-4	chr1	87230554	87230754	+	768.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023314, intron 6 of 6)	intron (NM_023314, intron 6 of 6)	16715.0	NM_001039169	26987.0	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	4.13243865077148	4.28222346437051	4.08724757153947	4.06927365054266	4.09416651432558	3.76657844341498	4.15861719534847	4.03733698300361	-0.301732249249424	0.475372567514173	0.752240812411715
Merged-chr4-135382534-3	chr4	135382436	135382636	+	910.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145555, intron 1 of 4)	intron (NM_145555, intron 1 of 4)	3136.0	NM_001168498	230822.0	Mm.35548	NM_145555	ENSMUSG00000043924	Ncmap	A330049M08Rik|AA545175|Mp11	noncompact myelin associated protein	protein-coding	3.45216532891868	3.81136627616093	3.39117553261784	3.66031727480025	3.89023684332362	3.68339736503006	3.4982876693449	3.50945836454255	0.208293177830387	0.681904764297613	0.869647747559641
Merged-chr14-36962608-4	chr14	36962496	36962696	+	936.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027045, intron 1 of 10)	intron (NM_027045, intron 1 of 10)	6168.0	NM_027045	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	4.73950777368239	4.4193386453623	5.0233094329723	4.69631078592411	4.7388732308445	5.47437986921483	4.9002180090421	4.56862161294906	0.461296335093431	0.239170613001278	0.549614418057695
Merged-chr11-116095760-4	chr11	116095641	116095841	+	849.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8746.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	3.83630993587289	3.79796652091507	4.27628200871093	3.86938849933992	4.08088316697934	4.52466634536844	4.03305903215057	4.35352903136164	0.784744436862729	0.0736821627999682	0.292404800462024
Merged-chr4-122961099-2	chr4	122960999	122961199	+	810.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029662)	promoter-TSS (NM_029662)	89.0	NM_029662	76574.0	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	2.95672136766899	3.10643487417792	3.22013555968306	2.97380228660768	3.25010271808187	3.74727173760893	3.2654352843859	3.21841030013227	1.19158643332476	0.0349799964749433	0.185193010624571
Merged-chr3-16004075-3	chr3	16003970	16004170	+	926.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081687, intron 1 of 3)	intron (NM_001081687, intron 1 of 3)	2262.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	4.24064848827	4.40530879078418	4.0532139653666	4.12529859757958	3.94497896332234	4.1257918597728	4.52765519963493	3.99933483963501	-0.111832023617645	0.794954460865999	0.92069281162566
Merged-chr8-70673255-4	chr8	70673166	70673366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015816)	promoter-TSS (NM_015816)	35.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	8.46803242208464	8.74932816968978	7.84946485900397	8.15946538859977	8.52297216981578	8.59695435156897	8.38497797771116	8.24905912549508	0.120558116154048	0.576220486897966	0.813446739194192
Merged-chr1-151599056-4	chr1	151598960	151599160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	27687.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	6.05717521447615	5.71484224807342	5.36154251516359	5.94476325076714	5.83527984321366	5.88272400147173	5.43009697749172	5.65215814572014	-0.145764105225286	0.616637827008071	0.83509320741657
Merged-chr11-116168255-4	chr11	116168154	116168354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172571)	promoter-TSS (NM_172571)	-76.0	NM_172571	217335.0	Mm.35241	NM_172571	ENSMUSG00000020776	Fbf1	1110033G01Rik|5930413D20|mKIAA1863	Fas (TNFRSF6) binding factor 1	protein-coding	7.17046368760104	7.23748808158063	6.67079089072214	6.96727604460046	7.17720216224274	6.9116233458216	6.99852093131083	6.75957940985545	-0.0715866605266995	0.744190078818451	0.89923574268619
Merged-chr4-155694774-4	chr4	155694690	155694890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178699, exon 1 of 1)	exon (NM_178699, exon 1 of 1)	448.0	NM_178699	230991.0	Mm.29083	NM_178699	ENSMUSG00000074738	Fndc10	B930041F14Rik|MNCb-3966	fibronectin type III domain containing 10	protein-coding	5.25902285827719	5.48089775535543	5.22774826052965	5.46548247106029	5.28046298120918	5.26806023987704	5.2652086638924	5.63687291917132	-0.00750176461160237	0.979523530272035	0.99269129061727
Merged-chr16-97463556-1	chr16	97463456	97463656	+	626.166687	f0_balb.idr	promoter-TSS (NM_010846)	promoter-TSS (NM_010846)	-650.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	3.8287064083982	3.63348050530112	3.78124289202462	3.50783708220056	3.6833993414342	3.62599130887528	3.71587695349848	3.77899433923101	0.0661326911799988	0.887955043307536	0.957980481384822
Merged-chr12-77288703-4	chr12	77288621	77288821	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252614, intron 3 of 12)	intron (NM_001252614, intron 3 of 12)	49982.0	NR_045554	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	5.34736775575303	4.70367713680406	5.29111385821938	5.512954234309	4.951716170936	4.64981224143102	5.23517164964173	5.66312372220317	-0.136105445785617	0.727498007501317	0.891505430861744
Merged-chr17-24169597-4	chr17	24169497	24169697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361535)	promoter-TSS (NM_001361535)	81.0	NM_001361532	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	6.92812203523647	7.08403527360374	7.12958836514401	6.64641647627883	7.1713413110655	7.69109520100527	6.83895482072162	7.42162951745831	0.496162885948444	0.0403160164250145	0.202832472542511
Merged-chr1-180835840-4	chr1	180835713	180835913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A3_MM|LTR|ERVK	-15338.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	5.60668011232181	5.72438594486285	5.75651852131043	5.69207939936496	5.71631380006159	5.27901495128421	5.411910512175	5.77558442436191	-0.208830776222199	0.448494759914633	0.733787116790339
Merged-chr17-29432836-3	chr17	29432748	29432948	+	827.4111330000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-58197.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	3.42945131903297	3.25488812986716	2.96364384232457	3.24132480695618	3.81126126528997	3.48796967910219	3.41639492361479	3.7710758116147	1.3604219948281	0.0128921556015948	0.0944960090171883
Merged-chr14-27142910-4	chr14	27142780	27142980	+	813.354126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1113.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	4.09736865193493	4.26855536741796	4.60824523979311	4.31567546597295	4.44982013819447	4.05524990013235	4.51469796523796	4.33304919921735	0.0531453892517287	0.895364254568342	0.960823579379062
Merged-chr2-50982918-4	chr2	50982828	50983028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73244.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	5.90926732845836	6.0710738075317	5.84106090323094	6.00302501320066	5.83412252784116	5.53807391604854	6.06646647214482	5.78859006653299	-0.224905388740237	0.380122201088992	0.682564774596403
Merged-chr10-80141439-4	chr10	80141331	80141531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025313)	promoter-TSS (NM_025313)	-844.0	NM_001347092	66043.0	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|Atp5f1d|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	7.80599169824123	7.91006787013794	7.57342297487409	7.77800720518891	7.83309713255858	7.60530409770549	7.87849152284291	7.91130729051269	0.0518871063736858	0.765840423505193	0.908405583340288
Merged-chr3-89270537-4	chr3	89270437	89270637	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009057)	promoter-TSS (NM_009057)	33.0	NM_009057	19729.0	Mm.17958	NM_009057	ENSMUSG00000027953	Slc50a1	MmSWEET1|Rag1ap1|Rga	solute carrier family 50 (sugar transporter), member 1	protein-coding	5.14722413859493	4.85589677327001	4.74843758254765	4.87127469747915	4.80221705835998	4.84392335860609	5.06439430077981	4.33576202016829	-0.249080666475708	0.491682538370913	0.763153828009839
Merged-chr1-181840184-4	chr1	181840079	181840279	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133815, intron 1 of 13)	intron (NM_133815, intron 1 of 13)	2222.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	5.87039640515322	5.65337297889352	5.78094086497589	6.03103699386658	5.41678354771107	5.14072466451611	5.54965146248972	5.97175017982067	-0.491409547307655	0.102416692534367	0.351524629082058
Merged-chr8-8649771-4	chr8	8649694	8649894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010111, intron 1 of 4)	intron (NM_010111, intron 1 of 4)	10979.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	6.06024487238266	6.19404184692684	6.65529293707886	6.65025224381165	5.25214168858428	5.48488403102655	5.59591901466202	5.59137848139801	-1.51950375247143	5.88518457401115e-08	2.65191791037484e-06
Merged-chr1-87853240-4	chr1	87853211	87853411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177646)	promoter-TSS (NM_177646)	24.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	5.74061183692613	5.71264639068767	6.01748998865186	5.64172650027392	5.94903352758833	5.83943884730579	6.21133935666763	5.92783670242229	0.347799030602659	0.173530949455532	0.467581910161457
Merged-chr10-67537600-6	chr10	67537499	67537699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010118)	promoter-TSS (NM_010118)	-270.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	6.41601298325778	7.05528505505132	7.44079358203613	6.7998281908917	6.88522485973546	7.04800154244468	6.75203800410922	6.9063934126792	-0.107091251089624	0.67346612328277	0.865743878067327
Merged-chr2-155775783-4	chr2	155775677	155775877	+	898.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010808, intron 1 of 8)	CpG	435.0	NM_010808	17391.0	Mm.389325	NM_010808	ENSMUSG00000027612	Mmp24	AU040325|MMP-21|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding	3.98955999984668	4.22073735870349	3.70859051037117	3.93244126891937	4.32649616876721	3.89098320083825	4.11576730137242	4.45004608688995	0.620817339862501	0.161400137263383	0.450137455770754
Merged-chr1-152888008-4	chr1	152887912	152888112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160257, intron 1 of 23)	intron (NM_001160257, intron 1 of 23)	14633.0	NM_001359257	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	5.97773240635837	5.83302794021212	5.8134382285805	5.43944349973364	6.29866714799839	6.49878713161322	5.90330134774916	6.23363185065299	0.768199096649406	0.00429874263638849	0.0424106131758716
Merged-chr5-138705368-1	chr5	138705268	138705468	+	622.0	f0_balb.idr	Intergenic	Intergenic	-49713.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	2.80267002712734	3.05788921966295	3.07213992290321	2.97652265163708	2.32407134418463	2.40357244126065	2.37887905704418	2.46211755057405	-4.46009574412235	3.17893570480523e-05	0.000762376902063111
Merged-chr1-194992785-4	chr1	194992696	194992896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15837.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	5.61762287951008	5.59205194468242	5.7622292418576	5.85925501055117	5.23674222054297	5.27323905475987	5.30921924327067	5.56290104209411	-0.648930186115376	0.0196255260559808	0.126347850130081
Merged-chr3-22061370-3	chr3	22061276	22061476	+	821.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15276.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.94678796293782	3.69989965921624	4.44886472197034	4.13988940560561	3.72934625429719	3.78385960400686	4.02822351656166	4.33816971977415	-0.254221672527176	0.603085035965736	0.82791756687509
Merged-chr7-67308296-4	chr7	67308190	67308390	+	933.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 3 of 11)	intron (NM_001357324, intron 3 of 11)	64568.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	4.69281519552089	4.38515313833835	4.13110408278665	5.00522794684007	4.54633507251504	4.20214795690775	4.4014447139951	4.41854914495272	-0.473982322403543	0.269076793127069	0.580620459637407
Merged-chr11-100356252-4	chr11	100356164	100356364	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177981)	promoter-TSS (NM_177981)	-123.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	5.375711919437	5.72694973759226	5.48365495421324	4.85683367768466	4.85976639862704	5.23888316177724	5.0008201743093	5.28626314563357	-0.527713569358428	0.135386620982056	0.409635889261711
Merged-chr18-6107971-4	chr18	6107859	6108059	+	960.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039692, intron 3 of 18)	intron (NM_001039692, intron 3 of 18)	28139.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	5.11383178902476	4.65395213825021	5.54612685562103	5.35880992846054	4.76908770293137	4.92412733952493	5.18179279735428	4.93928190745527	-0.486302906828343	0.176661854964197	0.471860639217102
Merged-chr7-88255069-4	chr7	88254981	88255181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-23004.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.2602245254043	6.32998987664212	6.71233161913022	6.29017090406294	6.10942535598463	6.02309857876982	6.36998440406924	5.61302137413213	-0.526233537373355	0.0493108055656514	0.229734419370164
Merged-chr9-116134843-4	chr9	116134703	116134903	+	891.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	B3A|SINE|B2	40560.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	3.89294789467092	4.22302946067044	4.24731982304569	3.71402447224002	4.05326138135406	3.79156804125056	3.92669120588603	3.60861237023223	-0.464261074079232	0.335862235681085	0.646029943887149
Merged-chr6-94283891-4	chr6	94283718	94283918	+	932.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286784)	promoter-TSS (NM_001286784)	99.0	NM_010367	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	6.9520642809845	6.92001030382949	7.26538232165979	7.2253520182885	4.75471788160802	5.36383172866416	5.44638383484744	5.32511196806162	-2.99059349358851	1.11610491810572e-26	8.73002549075246e-24
Merged-chr17-36220407-3	chr17	36220329	36220529	+	865.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30278.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	3.07080677147549	3.02375607634793	3.13020855769191	3.14226217280208	3.07342034319511	3.11740035663855	3.06042679332461	3.18483222011242	0.0513302978350177	0.926250186061785	0.972866537762017
Merged-chr1-191070433-4	chr1	191070281	191070481	+	903.6904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 3 of 5)	intron (NM_198654, intron 3 of 5)	7360.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	3.36867888799538	3.3601190150766	3.42937698640316	3.15422086154924	3.75781044217652	3.35445282863319	3.63031371759986	3.95129752373268	1.23086218660414	0.0164362417305722	0.111975043083882
Merged-chr2-73548733-4	chr2	73548580	73548780	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19193.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	4.81303112996679	4.09898222409043	4.26897123056617	4.95527443106562	4.43327438230103	4.06673166094364	4.38697521263273	4.56744801681133	-0.489934281398315	0.273298899556313	0.58486342477733
Merged-chr19-37548178-3	chr19	37548084	37548284	+	912.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2234.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	4.08271669583137	3.83285954711137	4.08336413059266	3.77965595362361	4.01422132216582	3.92011795281238	3.67549347388498	3.56737850808706	-0.364787257929888	0.439790096523036	0.727425871224001
Merged-chr18-50045012-3	chr18	50044931	50045131	+	775.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155293, intron 2 of 3)	MER119|DNA|hAT-Charlie	-8251.0	NM_134131	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	3.74860235651396	4.26870226392565	4.26374577198288	4.26585158293841	3.95081819818127	3.92618104213433	3.61643104938668	3.62727841209678	-1.00810943415867	0.0348841026121654	0.184896436484
Merged-chr1-171682137-6	chr1	171682076	171682276	+	914.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007649, intron 1 of 3)	intron (NM_007649, intron 1 of 3)	184.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	4.31858068678222	4.55013702454295	4.31923918881964	4.42576395763434	4.37302766947478	4.40101467865974	4.05705731598433	4.56024421356963	-0.117741053735845	0.761886598235828	0.90672517808069
Merged-chr3-145738153-4	chr3	145738074	145738274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20518.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	6.97576039471966	6.66087575627315	7.33766665680958	7.09239449605615	6.56570365739506	6.57172889212097	6.47130192836921	6.99639787037953	-0.524197070520635	0.0282094171080163	0.160869350045482
Merged-chr1-64753315-4	chr1	64753221	64753421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15571.0	NM_022721	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	6.21252249611377	6.1883627592208	6.19367029876972	6.53650992767025	6.34678301674455	6.19924325839063	6.3816104771319	6.30437887106301	0.00275149913970152	0.99054970048248	0.996288447351841
Merged-chr18-68052917-4	chr18	68052783	68052983	+	860.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	119710.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	4.89399899771923	5.21316647994518	4.7207823112465	4.88541877462013	4.18538387134712	4.51309945797756	4.31337827856383	4.42610322443301	-1.29994318308907	0.000494456140773647	0.00764941215767558
Merged-chr10-96732202-4	chr10	96732086	96732286	+	946.3916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	115185.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	4.80245377095203	4.48786182560579	4.60470125900216	5.00492630000819	5.09705610300953	4.60111399716994	4.85129271225003	4.90571799211965	0.260708776648623	0.47372718593182	0.751353302182328
Merged-chr17-50410084-4	chr17	50409987	50410187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99460.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	5.14683308239165	5.40772696083374	5.03435641864379	5.60307495770145	5.85943964495809	5.42978959424502	5.66968166372017	5.740799021727	0.59846502943004	0.0503859726384523	0.232913019069126
Merged-chr8-75196300-3	chr8	75196190	75196390	+	791.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17654.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	3.89299124669817	3.69854954123777	3.79252017110721	4.01295152010233	3.78637693104625	4.0144152770232	3.87712684085289	3.79039989018124	0.00147089795185061	0.997383975704943	0.99896497879051
Merged-chr10-80264846-4	chr10	80264750	80264950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122605)	promoter-TSS (NM_001122605)	-141.0	NM_001122604	70248.0	Mm.148693	NM_133188	ENSMUSG00000069565	Dazap1	2410042M16Rik|mPrrp	DAZ associated protein 1	protein-coding	7.57353703690369	7.97758045924945	7.07889315658186	7.49437743368238	7.9383480511588	7.90296585901773	7.42617889677163	7.49628619467243	0.186539925533817	0.433222641792511	0.722830392839943
Merged-chr12-85704783-4	chr12	85704707	85704907	+	907.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	18087.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	4.19181703489231	4.58863756400715	4.36929270471875	3.82782764285508	4.32336837070117	4.27165045153471	3.79732659444723	4.5923509504409	0.0192148607741486	0.96750598459752	0.988536511573071
Merged-chr9-13296622-4	chr9	13296529	13296729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49673.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	7.24766482210554	7.26811407313631	6.84770896598237	7.13970060111074	7.03539990422782	7.19826766020957	7.22296227357572	6.60753490281475	-0.13769405741083	0.533185890733395	0.788490786098902
Merged-chr9-103336696-4	chr9	103336578	103336778	+	928.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176979, intron 19 of 27)	Tigger1|DNA|TcMar-Tigger	28301.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	4.53456471727349	4.42561694070477	4.77895171359175	5.33018048539067	4.541862772032	4.71273078476203	4.86158164990099	4.81218766335348	-0.22156822515632	0.586410195929783	0.818625781283557
Merged-chr12-100194339-4	chr12	100194219	100194419	+	773.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045282)	TTS (NR_045282)	-5116.0	NM_009790	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	3.33074902024023	3.36037447933439	3.54388848934673	3.29257746430921	3.49067137422175	3.0374781903923	3.47940198955619	3.38593346347175	-0.0484793086221651	0.928987258013327	0.974317157505369
Merged-chr13-55067436-4	chr13	55067383	55067583	+	759.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_121592, intron 6 of 13)	L1M2|LINE|L1	26923.0	NM_001359757	20184.0	Mm.259301	NM_011307	ENSMUSG00000025878	Uimc1	9430016E08Rik|D330018D10Rik|D630032M02Rik|RIP110|Rxrip110	ubiquitin interaction motif containing 1	protein-coding	3.08230831613388	3.28209096726119	3.01718360159964	3.02920955732753	3.29232364169006	3.25603081263476	3.3025558131345	3.3141778876184	0.71442636150252	0.185719846878033	0.483585287292957
Merged-chr17-6782169-4	chr17	6782051	6782251	+	980.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	629.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	4.49275075129042	5.06356041417595	4.62507614045403	4.61213770880701	4.65018165295649	4.95448943546456	4.83044283727792	4.81525302548874	0.194992929322154	0.584643361823026	0.817725463637045
Merged-chr8-22192870-4	chr8	22192754	22192954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027338)	promoter-TSS (NM_027338)	-6.0	NM_027338	70160.0	Mm.41453	NM_027338	ENSMUSG00000031479	Vps36	1700010A24Rik|2210415M20Rik|2810408E15Rik|Eap45	vacuolar protein sorting 36	protein-coding	7.6495973988181	7.53513757432466	7.73810050448295	7.58242253331388	7.2113550648857	7.46948801141233	7.51108587583256	7.350812110772	-0.320146795706625	0.0719061566024004	0.288090077721617
Merged-chr13-97559091-4	chr13	97558976	97559176	+	946.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046157)	promoter-TSS (NR_046157)	-924.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	5.01189156328936	5.31741874236976	4.53952829029443	5.09472119523408	5.11933257797507	4.93423014619674	4.51963860260983	4.87016186930038	-0.276698682901655	0.456474721830249	0.739906295182684
Merged-chr11-30676329-3	chr11	30676243	30676443	+	784.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	MamRep1527|LTR|LTR	-26947.0	NM_029344	75572.0	Mm.390319	NM_029344	ENSMUSG00000060923	Acyp2	2310004B09Rik	acylphosphatase 2, muscle type	protein-coding	3.66422432045796	3.62685030543701	3.71906745234491	3.64367750613466	3.84817510538448	4.08371247540144	3.9429270956334	3.48519747565746	0.572781996108828	0.223516248893714	0.531602771975184
Merged-chr2-126932648-2	chr2	126932556	126932756	+	811.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_023220, intron 1 of 14)	intron (NM_023220, intron 1 of 14)	579.0	NM_023220	66552.0	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	3.03115310892812	3.19215832544064	2.96440241880632	2.75137599303196	3.22084643336581	3.49204413605393	3.20185157492079	3.21293451381565	1.1851413638684	0.0412505055365258	0.205499001510664
Merged-chr19-47463923-8	chr19	47463753	47463953	+	926.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	558.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	3.15706225785656	3.00079820767386	3.4305903048406	3.30609984530405	3.12054641007904	3.32880371117932	3.14629895189567	3.21526134284789	-0.12759539921376	0.819603251262817	0.930948039985942
Merged-chr5-146734255-3	chr5	146734167	146734367	+	759.516663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011669)	TTS (NM_011669)	60689.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	3.16701301092422	2.75606317654555	3.28625396434199	3.04328730771718	3.39936630401565	3.51173651273009	3.21587753413673	3.44419210017271	1.19864328138506	0.0399750550712064	0.201715537432574
Merged-chr4-53265540-3	chr4	53265439	53265639	+	845.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033140)	promoter-TSS (NR_033140)	-47.0	NR_033140	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	3.76081692078516	3.65746163022719	3.7613676358496	3.98809532034965	3.42549985000486	3.5442811154507	3.59221995313582	3.604193167962	-0.85619917048144	0.0778484904455929	0.301692040149554
Merged-chr18-4234487-4	chr18	4234393	4234593	+	894.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	68661.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	4.42362704195728	4.3881673480691	4.38037150762271	4.82112871807873	4.86232781196779	4.20606279894971	4.36103196158685	4.37766772072015	-0.0908803997494267	0.827744682544532	0.933903677361406
Merged-chr3-37705033-4	chr3	37704914	37705114	+	910.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	19346.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	4.50462792479263	4.70260955629702	4.50534116544366	4.51395909289611	4.50365496212607	4.40522058238623	5.04579639183891	4.16938294962858	0.0343394364705274	0.932064150030885	0.975437323713477
Merged-chr2-164803607-4	chr2	164803523	164803723	+	908.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133240, intron 1 of 5)	intron (NM_133240, intron 1 of 5)	1258.0	NM_133240	170789.0	Mm.277878	NM_133240	ENSMUSG00000017307	Acot8	PTE-2|Pte1	acyl-CoA thioesterase 8	protein-coding	4.51662783808558	4.28558387960578	3.92598987888792	4.39694150427811	4.88035828110701	4.76408603210858	4.32868883929327	4.29941248001382	0.672102720518121	0.109967301708507	0.366215108014911
Merged-chr11-115630630-3	chr11	115630532	115630732	+	860.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-2337.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	4.03869832083646	4.30324432713204	3.83202989428006	3.36486420587164	4.14280091902949	3.77447699343326	4.23877641890544	4.33437968241852	0.552623922572425	0.27976751317107	0.591827681649692
Merged-chr7-39545021-4	chr7	39544955	39545155	+	932.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27289.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	3.99570404142874	4.33334159990547	4.79959150918097	4.62909416297239	4.85308402153388	5.10352993073756	4.99996029909536	4.52188207884573	0.851489186318642	0.0381050725736485	0.195493798523838
Merged-chr4-48051927-5	chr4	48051929	48052129	+	716.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001307989, exon 1 of 3)	exon (NM_001307989, exon 1 of 3)	783.0	NM_001307989	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	3.2220203788858	3.10513965640446	3.16485624488639	3.06801631545471	2.92651821707476	3.27733898131286	2.9658996032504	3.42773896767623	0.0944735275819159	0.871059005708373	0.951521009320386
Merged-chr6-94509034-1	chr6	94508934	94509134	+	579.0	f0_balb.idr	intron (NM_026255, intron 2 of 9)	intron (NM_026255, intron 2 of 9)	8720.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	3.34142302223842	3.11905165310545	3.17838138688543	3.18462346951687	3.01621664237164	2.95702857215	3.32778846179484	3.17672231247936	-0.314277910447965	0.57985965987405	0.815494836491523
Merged-chr18-5819898-4	chr18	5819787	5819987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	227240.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	6.00906952452644	6.25020226781636	5.58909040727734	5.23800058451998	6.12042414678472	5.79728396335943	6.09904788870478	6.20050602075276	0.388696717061186	0.217618436889366	0.524585147935519
Merged-chr2-124710325-4	chr2	124710205	124710405	+	966.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	56724.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	3.9045823991901	4.85048982502931	4.48975950271757	3.48139067105857	4.59108182688571	4.20593469518835	4.61488516186335	4.31923241736201	0.335618209291349	0.525221383945322	0.783229855070132
Merged-chr4-128728610-4	chr4	128728500	128728700	+	954.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	1029.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	4.78544966538	4.50297243161601	4.33313564579917	4.56683983662243	5.2632711667135	4.88424629974158	5.33395525100305	4.99444704437907	1.16886371828603	0.00065360578024591	0.00955494061041767
Merged-chr3-27446208-2	chr3	27446108	27446308	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 23 of 26)	intron (NM_001356953, intron 23 of 26)	74857.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	2.51036441788184	2.74271358170507	2.72007073019532	2.65965171970755	2.70266225669876	2.89045012304629	2.77305784997914	2.89903981420714	0.728902440675317	0.251197204049899	0.562563816728054
Merged-chr9-59656411-4	chr9	59656298	59656498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011099)	promoter-TSS (NM_011099)	30.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	7.20829871599059	7.38309006172321	6.28972015707538	6.83976319359892	7.35775985446227	7.57439872173438	6.81796473791084	6.86210796382292	0.274215493064796	0.345363400344807	0.653723579224099
Merged-chr19-7057860-4	chr19	7057746	7057946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134147, intron 1 of 10)	intron (NM_134147, intron 1 of 10)	1078.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	6.96065852718339	6.883135569531	6.46606401277753	7.06558164632892	7.19013627394145	6.84682255781995	6.71127154879578	6.47970213681738	-0.0395267223380204	0.873155472344415	0.952435247820927
Merged-chr1-37013181-4	chr1	37013056	37013256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73629.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	6.30720719774122	6.90278635905657	6.50609953489143	6.27232675789926	6.82107088634577	6.79331218317396	6.56837597107683	5.94745740203848	0.0890773037557316	0.752192166691602	0.902363969099289
Merged-chr1-43462886-4	chr1	43462800	43463000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	17149.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	6.42074810343645	6.48965181717398	6.47343041085259	6.73614561601235	6.3412608989812	6.74582222002474	6.27971576615298	6.24877832379183	-0.197115438437697	0.399819340275794	0.697909055073835
Merged-chr8-11103952-4	chr8	11103838	11104038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95508.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	6.80527110491343	7.21984852296872	7.60715042668763	7.80759284633835	6.33704636053907	6.0366078632206	6.65164093110469	6.6164942440156	-1.38205201221778	5.20486538801071e-07	1.92355718303849e-05
Merged-chr4-16196839-4	chr4	16196739	16196939	+	920.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 2 of 6)	intron (NR_045765, intron 2 of 6)	32729.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	4.64255426594975	4.51931436366123	4.5112523023105	4.93692447961468	5.01134330826266	4.59709786247648	5.37807803031657	4.7213407631619	0.57860628528082	0.132593817864794	0.405565344042749
Merged-chr19-12467677-4	chr19	12467675	12467875	+	843.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172442, exon 9 of 9)	3' UTR (NM_172442, exon 9 of 9)	6996.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	3.43094962004622	3.86471156103628	3.36915566927718	3.37366660511974	3.58527667130835	3.71999636514778	3.73663661065205	3.60018830238253	0.430594075073471	0.392725468613696	0.692117979418531
Merged-chr11-75154357-4	chr11	75154272	75154472	+	992.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 15 of 18)	intron (NM_001002764, intron 15 of 18)	13780.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	5.37797882489601	5.47886946852465	5.4353658983282	5.54777252073604	5.29333053550631	5.40099177988266	5.02749831867691	5.28553583798496	-0.376673408422459	0.187174469086384	0.485421975337016
Merged-chr5-145185371-4	chr5	145185337	145185537	+	693.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020582, intron 2 of 3)	RLTR11B|LTR|ERVK	6155.0	NM_020582	57423.0	Mm.133551	NM_020582	ENSMUSG00000038690	Atp5j2	1110019H14Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2	protein-coding	3.17695841908335	3.08551060635884	3.10235783517145	3.37355221929103	3.8696705907723	3.88743520338525	3.48790301174597	4.19636638516465	2.17734324284191	0.00022518606097342	0.00401042284714924
Merged-chr7-35027196-4	chr7	35027109	35027309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	29357.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	8.18165219067441	7.84525929225405	7.99570197137683	8.09571248933237	7.9068603417257	7.67561073930634	7.72144780671365	8.16006354446798	-0.198745052776518	0.283566064766895	0.595670507139694
Merged-chr11-109413288-4	chr11	109413175	109413375	+	790.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-12671.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	4.29129930554066	4.92804513427161	4.5577444087724	3.88954687008887	4.83422506964259	4.87988186356699	4.1723387333457	4.38388704729544	0.288183086197966	0.537480318949594	0.791094119572232
Merged-chr9-121374606-4	chr9	121374505	121374705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357973, intron 1 of 5)	intron (NM_001357973, intron 1 of 5)	7647.0	NM_175114	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	5.18407042279805	5.27399360773698	5.6377596107495	5.44082399130006	5.85450448197463	5.70704609557577	5.47617876252034	5.9855053450935	0.634537740047502	0.0259367804912445	0.152247575341109
Merged-chr4-136124748-4	chr4	136124669	136124869	+	907.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A4|LTR|ERVK	-19053.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	4.4457018763349	4.21323768215487	3.77582559949788	3.68083902976185	4.67165155100602	4.6585697117629	4.20747526934105	4.76315867393522	1.27391285659291	0.00475750634331343	0.0458220778107181
Merged-chr15-62127992-4	chr15	62127901	62128101	+	868.520874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	88744.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	4.99277265821359	4.33675915674278	4.76363448470278	5.07194580778596	4.35485426725084	4.744126649764	4.54818880028983	4.43395238250099	-0.665535839910411	0.0887695264918701	0.325160875162866
Merged-chr18-36687906-1	chr18	36687806	36688006	+	742.0	f0_balb.idr	intron (NM_172831, intron 9 of 12)	URR1B|DNA|hAT-Charlie	8019.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	3.79180320204047	4.10162738010515	3.44160922151456	3.30604627088496	2.98767631648	3.37377766697868	3.24552965815643	3.25532379648745	-1.68921164595526	0.00530864967861813	0.0497320841635115
Merged-chr17-34187591-6	chr17	34187485	34187685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013683)	promoter-TSS (NM_013683)	29.0	NM_013683	21354.0	Mm.482076	NM_013683	ENSMUSG00000037321	Tap1	ABC17|APT1|Abcb2|Ham-1|Ham1|MTP1|PSF1|RING4|TAP|Tap-1|Y3	transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	6.17634674958137	6.55290004269299	6.43248562160059	6.3100383060428	6.80245816772233	6.89285946469947	6.56501435434795	6.68409675230804	0.535174071792769	0.0136294120297082	0.0981612788487909
Merged-chr7-19764134-4	chr7	19764076	19764276	+	906.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020486, exon 8 of 15)	exon (NM_020486, exon 8 of 15)	6356.0	NM_020486	57278.0	Mm.29236	NM_020486	ENSMUSG00000002980	Bcam	1200005K12Rik|B-CAM|Gplu|Lu	basal cell adhesion molecule	protein-coding	3.6770987286025	3.70341316569108	3.89691999543567	4.24085868953645	4.21890065746723	3.85502129353023	3.77706996770931	4.12457072906772	0.254598629259698	0.601569219513958	0.827133488921953
Merged-chr4-125099755-3	chr4	125099629	125099829	+	868.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151472, intron 4 of 7)	intron (NR_151472, intron 4 of 7)	14595.0	NR_151472	70088.0	Mm.291214	NM_027310	ENSMUSG00000028863	Meaf6	2310005N01Rik|2810036M01Rik	MYST/Esa1-associated factor 6	protein-coding	3.91302386570363	3.78851333470752	3.37334149104021	3.56482811941003	3.72927811650708	3.99036043463791	3.54657495386191	3.55809542791312	0.137938460970396	0.784144800244136	0.915967437099313
Merged-chr3-88244305-3	chr3	88244206	88244406	+	882.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021375, intron 8 of 9)	intron (NM_021375, intron 8 of 9)	10378.0	NM_021375	58176.0	Mm.103777	NM_021375	ENSMUSG00000104445	Rhbg	-	Rhesus blood group-associated B glycoprotein	protein-coding	3.54058195253347	3.59530870392837	3.5410591232343	3.29353082854051	3.65951154976502	3.65789069957323	3.5272566535172	3.79040126404604	0.569913142582636	0.241277115537708	0.551847683218073
Merged-chr8-71291059-4	chr8	71290968	71291168	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001142323, exon 2 of 39)	exon (NM_001142323, exon 2 of 39)	18354.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	6.04136711077625	6.06047345986796	6.42700933936383	6.5811821711704	5.48864941262265	5.35418362001895	5.52025264878422	5.63158500095088	-1.30479283819235	1.97311152458515e-06	6.4676274449828e-05
Merged-chr3-87529770-4	chr3	87529687	87529887	+	820.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359750, intron 4 of 4)	intron (NM_001359750, intron 4 of 4)	4209.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	4.58853617967113	4.77608484802907	4.58930368685617	4.46975433999378	4.12159368348017	4.28894435610224	3.73763720143522	4.2563192235016	-1.18720980304094	0.00463057322288589	0.0448725862945844
Merged-chr11-94149856-3	chr11	94149749	94149949	+	921.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-61605.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	3.85421829762198	3.77583906948067	3.6597840620487	3.86599236618046	3.61032501478615	3.60628540454743	3.3549416273736	3.60403191666961	-0.772129759414061	0.11041759527938	0.366970818246767
Merged-chr16-87455122-5	chr16	87455064	87455264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024258, intron 1 of 17)	CpG	179.0	NM_024258	74112.0	Mm.152941	NM_024258	ENSMUSG00000025616	Usp16	1200004E02Rik|2810483I07Rik|6330514E22Rik|UBPM	ubiquitin specific peptidase 16	protein-coding	6.41473043138469	6.93788606020479	7.06792426289604	6.78750063634366	6.47323490709078	6.86487829837049	6.81120559463059	6.91952914359141	-0.0756248687815331	0.746316296636335	0.900068581468616
Merged-chr12-85475137-4	chr12	85475050	85475250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010234, exon 2 of 4)	exon (NM_010234, exon 2 of 4)	1260.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	6.77345901539046	7.39253541906402	5.9766648668471	5.77689181847406	7.01433055146805	7.52003968529415	6.68223871730478	6.33650756084916	0.432102868151221	0.482203977748683	0.757109386601083
Merged-chr16-36711480-4	chr16	36711388	36711588	+	992.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 3 of 7)	intron (NM_001285788, intron 3 of 7)	17510.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	4.85645106119109	5.02046314188283	5.26209300682155	4.90384945039977	5.35128913051397	5.18059310280428	5.51336431330642	4.8146035972731	0.442590147041907	0.183096312527753	0.479931757527872
Merged-chr2-92037140-3	chr2	92037033	92037233	+	858.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12963.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	3.62044415989874	3.56927318786264	3.39715803805014	3.42094259311398	3.52606990479297	3.24072579577128	3.55406019762568	3.97396405573033	0.31690732899246	0.547410661304568	0.796812749713657
Merged-chr14-54449163-4	chr14	54449098	54449298	+	944.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14949.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	4.185145796682	4.58001086922548	4.28622198876843	4.25622724086783	4.75916883963629	4.50964008024818	4.86717373480295	4.37687132048564	0.706494967501573	0.0644906500610095	0.269911211894666
Merged-chr19-55545740-4	chr19	55545642	55545842	+	875.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	156462.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	4.17240571072989	4.6366147513633	4.12360805814492	4.25061084914183	4.0627398079062	4.34761291910734	4.29152103964731	4.4324405014543	-0.0729496287212506	0.859053714610843	0.946585512520476
Merged-chr7-30729538-4	chr7	30729453	30729653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027215)	promoter-TSS (NM_027215)	-19.0	NM_027215	69804.0	Mm.27499	NM_027215	ENSMUSG00000006315	Tmem147	2010004E11Rik|5033425B17Rik|Nifie14	transmembrane protein 147	protein-coding	6.66525423350151	6.70977581375322	6.26276753432893	6.35675830042795	7.03313689525163	7.06167936064048	6.1889395030879	6.67659021856837	0.402069114882646	0.130543813757728	0.402170679947429
Merged-chr12-38788785-4	chr12	38788679	38788879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163154, intron 1 of 9)	intron (NM_001163154, intron 1 of 9)	5068.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	7.58408230425345	7.5117943966999	7.75644123094664	8.11358152012971	7.16232065072214	7.25392489385769	7.60754092217638	7.39217675954925	-0.545767256032445	0.0109151857851213	0.0840105703656098
Merged-chr3-15245076-4	chr3	15244958	15245158	+	901.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87244.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	3.98816086156852	3.69486316527416	4.12327899709305	4.12548369963941	3.8811224791633	3.72601700270894	3.53072547177588	4.35225219390075	-0.234430266703136	0.640492142353188	0.848194202693214
Merged-chr7-4134323-4	chr7	4134234	4134434	+	815.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001305822, exon 14 of 14)	3' UTR (NM_001305822, exon 14 of 14)	2592.0	NR_033548	100037396.0	Mm.447887	NR_033548	ENSMUSG00000085886	D030047H15Rik	Gm15924	RIKEN cDNA D030047H15 gene	ncRNA	3.71705549333084	4.00971340126438	3.92792805699317	4.03421366725602	3.92090817243849	3.77715464002385	4.17027624478174	3.71559243851297	-0.0714974438316565	0.874935775856596	0.952974613103639
Merged-chr5-41525680-4	chr5	41525585	41525785	+	959.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	182006.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	5.05552922788915	4.69516321433401	4.87271810662229	5.0081685155808	6.64291065453821	6.45313139866931	6.80994378376668	6.73861167273197	2.79547132261518	2.66433984457361e-23	1.39444886615371e-20
Merged-chr17-33782011-5	chr17	33781870	33782070	+	889.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020581)	promoter-TSS (NM_020581)	-395.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	3.07759193678641	3.1862845601901	3.30860325012258	3.14327752005411	3.28534789309781	3.18668158136417	3.18666150243021	3.13801508258636	0.0965791408883302	0.858672023032892	0.946576014812915
Merged-chr3-94838261-4	chr3	94838163	94838363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165948, intron 1 of 18)	CpG	696.0	NM_172683	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	6.65323257371851	7.06087873161839	6.68646605671311	6.61676306820757	6.99405837431149	7.35400848585942	7.09859387857946	7.00133481116201	0.489492843733367	0.022459502063321	0.138398831041912
Merged-chr9-43743791-3	chr9	43743711	43743911	+	897.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021424)	promoter-TSS (NM_021424)	-765.0	NM_021424	58235.0	Mm.335096	NM_021424	ENSMUSG00000032012	Nectin1	AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|Pvrl1|nectin-1	nectin cell adhesion molecule 1	protein-coding	3.86596624873694	4.33677132501338	4.51536765853491	4.15646886125419	3.45573384267163	4.04662075758724	3.67367169558569	4.40645177069868	-0.757077723125361	0.150659262817052	0.433476521607783
Merged-chr4-132113568-3	chr4	132113462	132113662	+	749.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013622, exon 3 of 3)	exon (NM_013622, exon 3 of 3)	30924.0	NM_013622	18386.0	Mm.5243	NM_013622	ENSMUSG00000050511	Oprd1	DOR|DOR-1|Nbor|mDOR	opioid receptor, delta 1	protein-coding	3.51511859302483	3.48373080669784	3.05754926758796	3.6911991833789	3.60947568355341	3.45152840281379	3.79355945551483	3.71770308582637	0.576091183420378	0.30056397949761	0.612477626586326
Merged-chr6-29248616-3	chr6	29248540	29248740	+	813.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23848.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	3.40925699389669	3.23205142325271	3.18626323577046	3.35257132650672	3.21189375371301	3.52464624083426	2.90969436673116	3.18468601202663	-0.279794810912551	0.627811627794301	0.84134133853166
Merged-chr12-40017178-4	chr12	40017067	40017267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20209.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	6.1666103946935	5.78470698611516	5.71054881922879	6.27100040097647	5.65061608166703	5.66110674667182	5.70747887659452	5.98743414362485	-0.424396481678363	0.125950116086608	0.394223114732801
Merged-chr18-32378348-4	chr18	32378257	32378457	+	863.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045403)	promoter-TSS (NR_045403)	-73.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	4.39331324392856	4.80693974320257	4.48043194415908	4.50120696553883	4.76939859128313	4.38022412153168	4.28295388831649	4.39126899894718	-0.160282085941837	0.680685111695102	0.868956507598538
Merged-chr9-40269242-6	chr9	40269122	40269322	+	772.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178227)	promoter-TSS (NM_178227)	6.0	NM_001359700	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	3.81670324413424	4.12815880463818	3.63794451228768	3.6662501629899	3.88458915635818	4.45108174104489	4.33762975177513	3.92247610662182	0.914812827938216	0.0516417646818389	0.236219341191993
Merged-chr5-76905522-4	chr5	76905413	76905613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173765)	promoter-TSS (NM_173765)	1.0	NM_173765	231326.0	Mm.39271	NM_173765	ENSMUSG00000055923	Aasdh	A230062G08Rik|A830035E16|Acsf4|U26	aminoadipate-semialdehyde dehydrogenase	protein-coding	8.69001710092722	8.85265083602198	8.5552189785268	8.79147476047199	8.98913459032319	9.26318249436303	9.01174151342914	8.848220486575	0.37965691344089	0.018788091743204	0.12275820153453
Merged-chr15-73034790-4	chr15	73034685	73034885	+	907.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164643, intron 4 of 8)	intron (NM_001164643, intron 4 of 8)	21027.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	4.24017167327725	4.10347778496917	4.00076712492928	3.92878750104855	4.28388043127058	4.07074872353869	4.59348207935007	4.19365065803414	0.598914801348383	0.146721067027125	0.427220370158867
Merged-chr1-178318667-5	chr1	178318557	178318757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025511)	promoter-TSS (NM_025511)	-496.0	NM_025511	66359.0	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	7.12679538967495	7.25929949682787	7.4379692606532	6.95005946748307	7.00701854162169	7.12046762312544	6.77097309887888	6.87116566472316	-0.340899429372555	0.104680990349103	0.35576242418157
Merged-chr10-117846077-4	chr10	117846007	117846207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024457)	promoter-TSS (NM_024457)	-133.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	8.24453708208978	8.33857373427915	8.19803007697341	8.28201649380106	8.37005461979969	8.55177091853552	8.50341707619145	8.3846976779283	0.232932555676462	0.120939470426138	0.385126635892183
Merged-chr18-36744615-4	chr18	36744507	36744707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011879)	promoter-TSS (NM_011879)	-20.0	NM_010885	17991.0	Mm.29867	NM_010885	ENSMUSG00000014294	Ndufa2	AV000592|B8|C1-B8|CI-B8	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2	protein-coding	7.95141956561259	7.91458209212073	7.78406640735389	7.5469903999819	7.79394802650573	7.94579901135176	8.22744546601033	7.64643704100338	0.153751683376902	0.43988688300853	0.727441689701829
Merged-chr2-164860984-4	chr2	164860871	164861071	+	975.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3263.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	5.05598283459048	5.2237951240077	5.09010219885331	4.85782984920738	5.34868717299307	5.01415202367362	4.81418580930506	5.21144215513887	0.135362639371166	0.678834811833477	0.868177475500492
Merged-chr7-143053551-4	chr7	143053484	143053684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110354, exon 1 of 5)	non-coding (NR_110354, exon 1 of 5)	102.0	NR_110355	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	5.47899292389038	5.36403449665889	5.33921996230937	4.67087387429653	5.510204907466	5.4840847004458	5.39817955176026	5.42170338580671	0.406326641488209	0.219795798298748	0.527410375380775
Merged-chr10-99581309-4	chr10	99581197	99581397	+	909.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27874.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	5.19918715058593	4.98607267737972	5.31199668348949	5.51999637193513	4.55715095956885	4.75233349422594	4.95226216360184	4.61351564814665	-1.11061731450771	0.00118173233084016	0.0153689979128214
Merged-chr4-125116715-4	chr4	125116601	125116801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11180.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	7.34415496741108	7.36276034152798	7.80235778262928	7.66315504000073	7.31049524746492	7.24511742969491	7.69028250317646	7.30870375320515	-0.21323658959316	0.299968428172382	0.612179983023751
Merged-chr11-119503874-3	chr11	119503763	119503963	+	849.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164636, intron 7 of 8)	intron (NM_001164636, intron 7 of 8)	12243.0	NM_177394	338371.0	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	3.30096803953015	3.23705674454271	3.11176787956369	3.0051620186214	3.56727822752662	3.53029940918264	3.28892674555531	3.56453671246442	1.21445103467533	0.0212797646208481	0.133404295045565
Merged-chr7-126861883-4	chr7	126861792	126861992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172746)	promoter-TSS (NM_172746)	-80.0	NM_172746	233876.0	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding	5.67317532672523	5.9996561036966	5.83125238594605	5.87234413276235	6.04216382135801	6.03202667853023	5.96232634232109	6.42341801052703	0.427926445596014	0.0901607361078065	0.327810749114653
Merged-chr7-135716588-4	chr7	135716488	135716688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081117)	promoter-TSS (NM_001081117)	-209.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	8.22286041872815	8.08275295695563	8.04285954553801	8.15277435603998	8.22217619802079	8.36011395525391	8.32790227458291	8.04421505483602	0.147564710625724	0.358532215124071	0.664513189780133
Merged-chr5-117138740-4	chr5	117138622	117138822	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	5134.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	4.59146059203174	4.23724985372705	4.46366636984184	5.28193174742454	4.54377297605064	4.23289877936774	4.85854689278932	4.77816542927657	-0.214422910067133	0.636127918302134	0.84605084451638
Merged-chr6-129238036-4	chr6	129237930	129238130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040265)	promoter-TSS (NR_040265)	15.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	5.79822277294854	5.90136245510624	5.48234195948349	5.56027081423721	5.72018392169745	5.74537300998606	5.81533111058075	5.74754610000941	0.109521888441868	0.676701738089269	0.867245059450191
Merged-chr16-57353866-4	chr16	57353765	57353965	+	952.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	588.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	4.7633339770172	4.67846722832175	4.48491214250255	4.78306708625733	4.73404346073257	4.82400332138693	4.70538817706799	4.29099321098966	-0.0720977273418359	0.842593388155079	0.940251336238462
Merged-chr19-55414251-2	chr19	55414151	55414351	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 6 of 8)	intron (NM_001360431, intron 6 of 8)	98194.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	3.352495066882	3.28818453764015	3.29380375091413	3.37478083306814	3.53651575225672	3.57850114487719	3.50095823251843	3.23040036617937	0.479182156033928	0.349475904788898	0.657005261102145
Merged-chr14-19418821-4	chr14	19418724	19418924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	183763.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	7.1070822966742	6.44007545155644	7.03605602656801	6.81653021411794	7.19214538506669	7.46979868248244	6.78546603301082	7.78814864870326	0.667209085831229	0.01195437856631	0.0896723271125911
Merged-chr11-75193906-3	chr11	75193783	75193983	+	841.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177708)	promoter-TSS (NM_177708)	-110.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	3.16974557446089	3.0962710474724	2.99948531351874	2.88485623016314	3.09830479669246	2.83562312650774	2.92746113733996	3.05735919696668	-0.193685612780938	0.745417403104187	0.899514909367525
Merged-chr8-95888469-4	chr8	95888365	95888565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010325)	promoter-TSS (NM_010325)	-100.0	NM_010325	14719.0	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	6.95585543505179	7.04409537295636	6.91821729628851	6.99896251870815	6.83632431066757	6.71553287586687	7.12105485325315	6.9001077115452	-0.112970167314206	0.566525778422346	0.807900514541786
Merged-chr2-79611293-4	chr2	79611196	79611396	+	971.892822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24129.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	5.18762240227996	5.07273121360343	5.39958837800561	5.15557564068256	4.21403682527877	4.70743330396306	4.76282015054041	4.74232569490554	-1.21661455235317	0.000629714348217679	0.00927456550170523
Merged-chr9-108094568-4	chr9	108094475	108094675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146226)	promoter-TSS (NM_146226)	-95.0	NM_146226	235606.0	Mm.219639	NM_146226	ENSMUSG00000032590	Apeh	-	acylpeptide hydrolase	protein-coding	7.63223862344428	7.53314483354301	7.29421472835992	7.37265358620739	7.43320943850613	7.48196685245837	7.66023399004773	7.36254283520628	0.0361584580220255	0.843990970701611	0.94088019607581
Merged-chr12-9007224-4	chr12	9007121	9007321	+	990.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172470, intron 15 of 27)	intron (NM_172470, intron 15 of 27)	-22776.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	4.73859602304915	4.72519964626088	5.08707639521383	5.06961568720979	5.10997597223554	5.47696642101724	5.43740350131191	5.46140073483245	0.825664708718137	0.010202942968936	0.0800435663601782
Merged-chr7-101908498-4	chr7	101908378	101908578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025605, intron 1 of 4)	intron (NM_025605, intron 1 of 4)	-2119.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	5.59579376398883	5.52607796524503	5.88979293521684	6.14560907416398	5.54609087947762	5.68883807208736	5.96344515065561	5.41657162465036	-0.269055632929654	0.369425742438463	0.673692529630015
Merged-chr4-126023756-4	chr4	126023747	126023947	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045561)	promoter-TSS (NR_045561)	-812.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	4.2040435503693	4.17471090383425	3.97439808176544	4.22008223883652	4.96587424789742	4.93107569028142	4.70135463370026	4.97818678872891	1.63812878865839	9.41943809245716e-06	0.000260881783650976
Merged-chr3-88380241-3	chr3	88380144	88380344	+	801.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1543.0	NM_001032298	12097.0	Mm.425160	NM_001032298	ENSMUSG00000074486	Bglap2	BGP2|Bglap1|Bgp|Og2|mOC-B	bone gamma-carboxyglutamate protein 2	protein-coding	4.21387767739523	4.31203921224077	4.52366983414189	3.24068367615698	3.74609558369335	4.10278248715203	4.00896356262765	4.33652127073241	-0.246821150601809	0.656244503601765	0.856569188570631
Merged-chr16-35022355-4	chr16	35022270	35022470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023587)	promoter-TSS (NM_023587)	-51.0	NM_023587	70757.0	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	7.38014555661877	6.98461518215492	6.84769626032244	7.13609743954351	7.05885285008172	7.19985099151604	7.22627588857745	7.12625196642111	0.0656689424456383	0.743770287847985	0.899073282101141
Merged-chr4-65589984-4	chr4	65589884	65590084	+	753.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207109, intron 16 of 22)	intron (NM_207109, intron 16 of 22)	-15002.0	NM_053084	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	4.00503690079677	3.9653842643961	3.80254630742828	4.10025853307221	3.63338234108094	3.86627008516773	4.12034082423469	4.13660799142537	-0.0867252054685511	0.849176843188846	0.943016077779251
Merged-chr17-24658286-4	chr17	24658181	24658381	+	718.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001099664, exon 1 of 2)	exon (NM_001099664, exon 1 of 2)	144.0	NM_001099664	381073.0	Mm.291772	NM_001099664	ENSMUSG00000071230	Npw	Gm935	neuropeptide W	protein-coding	3.64253700684492	3.90442241249521	3.75356021201948	3.57926519122616	3.80409332728609	3.76133221436944	3.97640377533745	3.9919396009595	0.489286599686759	0.280114805658733	0.592203034097152
Merged-chr1-7398061-4	chr1	7397957	7398157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	309137.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	9.30554005412337	9.15566620182015	9.32383259643682	9.26810142790495	9.15557633830289	9.17030217581408	9.1846525574583	8.97963322157057	-0.171111182607867	0.221460976888312	0.529487449999433
Merged-chr9-32500263-4	chr9	32500148	32500348	+	754.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	41204.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	3.4884740979924	3.69584057733017	3.7090531024825	3.63091838721289	3.71567958311569	3.72015340139645	3.74277661751142	3.60168488888815	0.192899891535925	0.677580609587121	0.867764888703673
Merged-chr2-43556064-2	chr2	43555964	43556164	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289593, intron 1 of 12)	intron (NM_001289593, intron 1 of 12)	739.0	NM_027552	70789.0	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	3.83524309290849	4.03744266402646	3.8853040806033	3.75200618571076	3.97612128586656	3.73348619239223	3.82001369105325	3.72864625138342	-0.141161262809459	0.754356294561491	0.90326060544356
Merged-chr9-48407733-3	chr9	48407653	48407853	+	802.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	45712.0	NM_172921	244853.0	Mm.325522	NM_172921	ENSMUSG00000044229	Nxpe4	C130036J11|D930028F11Rik|Fam55d	neurexophilin and PC-esterase domain family, member 4	protein-coding	3.03717741482569	2.86947294252805	2.95240096283141	2.37323064268431	4.19525656475764	4.28127461640942	4.08509688931318	4.02397675961659	7.43649037361857	3.11108903140375e-16	6.15122794906354e-14
Merged-chr4-133479979-4	chr4	133479886	133480086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175307)	promoter-TSS (NM_175307)	-147.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	7.94088509026587	8.27178031365091	8.23229897902576	7.7726807308721	8.2778205098303	8.41575170378751	8.17613110933232	8.03451961923229	0.216343756803681	0.252872571465265	0.564097303633136
Merged-chr14-65834046-4	chr14	65833941	65834141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028039)	promoter-TSS (NM_028039)	-72.0	NM_028039	71988.0	Mm.249280	NM_028039	ENSMUSG00000022034	Esco2	2410004I17Rik|D030072L07Rik	establishment of sister chromatid cohesion N-acetyltransferase 2	protein-coding	8.74142481508465	8.89001635435212	8.40563513533581	8.56334784996172	8.64642394550169	8.67666801074777	8.60514444648626	8.31110608831454	-0.117759023503609	0.504343895376582	0.770655921364685
Merged-chr18-75019567-4	chr18	75019462	75019662	+	899.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 1 of 16)	intron (NM_027727, intron 1 of 16)	790.0	NM_027727	69190.0	Mm.173826	NM_027727	ENSMUSG00000035765	Dym	1810041M12Rik|4933427L07Rik|C030019K18Rik	dymeclin	protein-coding	4.19938759297163	4.22494980497935	4.49081434807781	4.3938996376181	4.12290835542719	4.27821687386677	3.92787365442723	4.41146804174822	-0.348871081621731	0.392091181473761	0.691774675781771
Merged-chr3-90267924-4	chr3	90267817	90268017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356483, intron 2 of 27)	MIR3|SINE|MIR	1403.0	NM_201407	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	6.06096072683928	5.8152240075579	6.31549424878043	6.50411924017558	6.11248283217835	6.02957493242239	5.98736847817766	6.47595481648699	-0.0732436157642329	0.78869705134004	0.91812687233996
Merged-chr17-48262016-4	chr17	48261888	48262088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2307.0	NM_172623	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	5.92586729279162	6.35214268119192	6.13406912936519	5.62661714331905	6.05121637158278	5.90996304223043	5.91879460762067	5.46804119686241	-0.26481824339031	0.369158692356745	0.673491314105063
Merged-chr8-11758351-4	chr8	11758233	11758433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113518)	promoter-TSS (NM_001113518)	3.0	NM_001113518	54126.0	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	6.81498368824917	6.64741004928368	6.60203070037588	7.01900522977565	7.03551349219231	7.11290276505751	6.91432015483363	6.79720516408995	0.244454186776382	0.251059663717423	0.562326561683579
Merged-chr6-108702018-3	chr6	108701914	108702114	+	760.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-41080.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	3.61606044685495	3.42892798618876	3.75667869579108	3.57866813544509	3.10459782014277	3.25754320631339	3.38917804739612	3.56411556460687	-0.915525220748687	0.0893895376097348	0.326407320449562
Merged-chr13-58589654-3	chr13	58589548	58589748	+	880.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022317, intron 1 of 17)	intron (NM_022317, intron 1 of 17)	21229.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	3.75087569334316	3.87254780773825	3.75142179721086	3.71843541588383	3.48365055180321	3.47070091587329	3.58302722006029	3.59490196890322	-0.772903307260056	0.105503398262162	0.357550177827094
Merged-chr11-115163254-4	chr11	115163169	115163369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012030)	promoter-TSS (NM_012030)	-72.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	8.47480433653516	8.64638411434481	8.3550508269811	8.31940563064711	8.68988761029162	8.60272887990527	8.69394054158061	8.38771593538669	0.187012910546342	0.255735258585331	0.56736522248136
Merged-chr17-29245886-4	chr17	29245766	29245966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8076.0	NM_001360239	240058.0	Mm.39905	NM_153166	ENSMUSG00000024008	Cpne5	A830083G22Rik	copine V	protein-coding	6.14907618978666	6.1282448301172	6.03194697385609	6.0080049358711	5.91058750120217	5.44557101385094	6.19117437242381	5.46535348356142	-0.44185596650629	0.117483924864513	0.379091902984322
Merged-chr18-60381917-4	chr18	60381817	60382017	+	847.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021792, intron 2 of 2)	intron (NM_021792, intron 2 of 2)	5888.0	NM_001146275	60440.0	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	4.58897310465039	4.24242356430542	4.55086686276385	4.19675316540441	4.60770850863142	4.36829931600531	4.60538167641616	4.69639545429415	0.428422845150784	0.256304323272161	0.567890596924176
Merged-chr16-96145328-4	chr16	96145215	96145415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207301)	promoter-TSS (NM_207301)	-104.0	NM_207301	71446.0	Mm.255063	NM_207301	ENSMUSG00000023147	Wrb	5530402J05Rik|C030018G21Rik|Chd5	tryptophan rich basic protein	protein-coding	8.91498344373171	8.86691727212934	9.12082625981628	9.08175307058355	8.90939053968934	9.05216617290315	9.22792468377365	8.64306802079431	-0.0328548850686729	0.84995995977811	0.943355890616948
Merged-chr6-97444332-3	chr6	97444219	97444419	+	856.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	14967.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	2.97737577526677	2.66223495355986	2.81351724380458	2.77907815590724	2.56434870757798	2.50659153319241	2.61675667151146	2.68951202553217	-1.09903348752649	0.104824585572006	0.356114412773473
Merged-chr2-122418522-4	chr2	122418423	122418623	+	998.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22297.0	NM_172980	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	6.25674865639043	6.62838975402235	6.52367994042493	6.09550683467722	5.24153970558934	5.57664370025367	5.46347248629105	5.45522242177476	-1.54836990028458	2.0534538758523e-08	1.02714542114751e-06
Merged-chr1-120073998-6	chr1	120073916	120074116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019432)	promoter-TSS (NM_019432)	-236.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	5.81704361334133	6.15455392915092	6.68455405781759	6.0942385105048	6.37631215327988	6.40647336553451	6.19818373296633	6.56599532574849	0.25809860532529	0.332419749183054	0.643468166711489
Merged-chr1-77515942-1	chr1	77515842	77516042	+	689.0	f0_balb.idr	promoter-TSS (NM_007936)	promoter-TSS (NM_007936)	-854.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	3.80139871531213	3.17985939934421	3.71492383260548	3.44227276596147	3.00805145101993	3.34259597948857	3.00696089855952	3.66661472166569	-0.927707771304761	0.136675312595403	0.411151599640715
Merged-chr14-76174519-4	chr14	76174396	76174596	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63605.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	4.70178095017047	4.74215390133289	5.09212263045684	5.10150765296982	4.79544815055875	4.87861616775316	4.97286927754981	4.89124033957543	-0.106204061738549	0.751043981280534	0.901974387957517
Merged-chr8-84970446-2	chr8	84970351	84970551	+	776.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_011563, exon 3 of 6)	exon (NM_011563, exon 3 of 6)	829.0	NM_011563	21672.0	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	3.2745743588126	2.94075970955399	3.27507004744792	2.827972928466	2.64535373607152	3.09174407797966	3.15170671930025	3.3248568796039	-0.0601820669419794	0.927272080029571	0.973427812288727
Merged-chr18-42510169-3	chr18	42510071	42510271	+	978.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-1316.0	NM_001039474	56070.0	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	4.08501855156395	3.61641931911721	4.08568218787839	4.39504073849459	3.60674214549633	3.57638288102539	3.51181902098543	3.58442307515141	-1.53914026358454	0.00261278859449097	0.0286910952433312
Merged-chr5-115535113-4	chr5	115535003	115535203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-24364.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	6.68158840666676	6.52458076079417	6.49340989444733	6.7026387741665	6.79816663602469	6.15612041840264	6.39052628566846	6.88023149364704	-0.0125862262486934	0.958850133856412	0.985317592472109
Merged-chr11-101735167-4	chr11	101735113	101735313	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144831, intron 2 of 22)	URR1B|DNA|hAT-Charlie	2257.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	4.3038653570744	4.46476067399419	3.95856209923418	4.5247264754933	4.20887331172799	4.02350162916875	4.40779706425133	4.34442232435647	-0.217366201895786	0.604068593518769	0.828350269166784
Merged-chr9-95546975-4	chr9	95546953	95547153	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12764.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	3.88418764277468	3.9801488610298	3.66476023246062	3.78091663155677	4.29975278681103	3.84247702931944	3.96495158603637	3.93206172526431	0.558143737915336	0.212669482967905	0.517670706102327
Merged-chr18-80390870-4	chr18	80390780	80390980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26626.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	4.93619112959927	4.84629587931369	5.56308579335313	5.09944811003763	4.65581994590069	5.07632179484537	5.08394048885818	5.13738032348387	-0.276338103094895	0.435024364392053	0.724233405053489
Merged-chr1-156615763-4	chr1	156615657	156615857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	56970.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	7.42450294956585	7.32053912804391	6.95016325151324	7.35411279165671	7.02901537942566	6.55893298246496	6.6857374451522	7.04621710385086	-0.582473850214812	0.00825767861057481	0.06863303430898
Merged-chr18-65328841-4	chr18	65328761	65328961	+	926.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037294, intron 4 of 12)	MER5A1|DNA|hAT-Charlie	65027.0	NM_001037294	225638.0	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	4.53889975218241	5.53917909039111	5.17369358628204	4.26219213792101	4.67250768480035	4.62857831387481	4.76421384634966	4.53671426576514	-0.65835345671454	0.138521413019931	0.414034419137721
Merged-chr1-43445888-8	chr1	43445801	43446001	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010879, exon 1 of 5)	5' UTR (NM_010879, exon 1 of 5)	150.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	4.50474833372478	4.15540447880723	4.69470269813862	4.14118064981892	4.67417883899178	4.55172754297897	4.60032173326667	4.46112901475023	0.456694783200416	0.240177042193715	0.550688109982813
Merged-chr9-44493102-4	chr9	44492969	44493169	+	731.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357490, intron 1 of 7)	intron (NM_001357490, intron 1 of 7)	-6067.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	3.87178170098539	3.58088265004227	3.6513073471679	3.95425963520033	4.19850943340932	3.82962320590713	3.85627240081307	4.26015234375618	0.741314809319441	0.113465863048517	0.372473895607002
Merged-chr8-61606995-4	chr8	61606902	61607102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	(CA)n|Simple_repeat|Simple_repeat	-15833.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	8.42742229654352	8.5675941085565	8.67034199123462	8.29517524545418	8.44944594294885	8.76827652298601	8.65626730729832	8.47950012760275	0.125002148325063	0.457935310899327	0.740921907905876
Merged-chr4-88544057-4	chr4	88543961	88544161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14184.0	NM_206870	242517.0	Mm.377261	NM_206870	ENSMUSG00000096011	Ifna15	Gm12597|Ifnaa|MuIFN-alpha-A	interferon alpha 15	protein-coding	5.63101506398108	5.67874963557911	5.29563286207948	5.77008576895133	5.80571895850265	6.19497255290511	5.95163586062235	5.6008479465462	0.461199392742647	0.102626598334787	0.351907938439718
Merged-chr9-61332409-3	chr9	61332296	61332496	+	893.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38587.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	3.67707953638768	3.59410251944235	3.56292035663475	3.93226526884145	4.05458406322197	3.55241988531572	3.76737937221262	4.01094989316788	0.445097282006703	0.366541876016137	0.67093772033515
Merged-chr8-122376516-4	chr8	122376407	122376607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310650)	promoter-TSS (NM_001310650)	-102.0	NM_001310650	76014.0	Mm.241489	NM_001029993	ENSMUSG00000017478	Zc3h18	1190001B23Rik|5830416A07Rik|Nhn1	zinc finger CCCH-type containing 18	protein-coding	7.39754408667229	7.43358558951077	7.28542416777602	6.82842167933903	7.67354288018884	7.62421772599666	7.52742032971185	7.42288617854566	0.433036323219946	0.0389181223741714	0.198179498674427
Merged-chr16-76366071-4	chr16	76365988	76366188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	6961.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	6.03694364117333	5.88556532787395	6.19758332467575	6.38147180616051	5.95314149023949	6.03214255717945	6.14705225339324	5.69464608641363	-0.29020818727902	0.264271497261036	0.576455127446606
Merged-chr5-63875064-4	chr5	63874976	63875176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	62581.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	6.129412185545	5.95012556982546	6.20873256847519	6.17219727060383	6.11800582700346	6.11104989455159	6.09917662835487	6.18520153887253	0.0114593270763043	0.960062165401061	0.985737682958271
Merged-chr13-37291519-4	chr13	37291412	37291612	+	857.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53833.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.80547774034876	4.40436112957319	4.02436155821497	4.30945659797293	4.23569001847685	4.29237147459254	3.95701331146908	4.02203281498809	-0.0815811219336007	0.85373778197052	0.944903737664624
Merged-chr8-105289207-4	chr8	105289120	105289320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177788)	TTS (NM_177788)	308.0	NM_001166394	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	7.68860488895792	8.21156341421377	7.61056136952498	7.56091522758651	8.08434906840648	8.17620703268768	7.98664831786049	7.90343820903319	0.320293425200742	0.115924275129174	0.376739729596271
Merged-chr11-20201852-4	chr11	20201762	20201962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	CpG	450.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	6.05848572119026	6.15572585270821	6.1829982811954	5.7987596409714	5.9800744258051	6.23593015538011	6.33242918822527	6.50429880995866	0.347012223940171	0.170245932483151	0.46331237729758
Merged-chr16-23506042-3	chr16	23505946	23506146	+	711.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359083, intron 2 of 10)	intron (NM_001359083, intron 2 of 10)	14769.0	NM_008555	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	3.48741354782607	3.26295694805942	3.3724731317368	3.67503176474703	3.52991254717153	3.48602565086029	3.41874200217539	3.77976318815823	0.289442103864475	0.579313668392246	0.815307015234335
Merged-chr11-75510805-4	chr11	75510725	75510925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001029938, exon 4 of 8)	exon (NM_001029938, exon 4 of 8)	731.0	NM_001029938	280408.0	Mm.41416	NM_001029938	ENSMUSG00000038195	Rilp	AI835553|Gm857	Rab interacting lysosomal protein	protein-coding	7.11397706825676	7.01965045896655	6.52017246400196	6.52589361641256	6.89921083276605	7.17359180238702	6.91111091616972	7.38262989694399	0.399696405941383	0.098509981335116	0.343994301133918
Merged-chr1-134080268-5	chr1	134080185	134080385	+	853.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1130.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	2.91518068693848	3.36591038010473	3.41102893037531	3.10408488085676	3.17974537616924	3.23496562064839	3.34467910065098	3.45942965638285	0.354619229023079	0.53254059023921	0.788191521929567
Merged-chr1-106231521-4	chr1	106231419	106231619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	Lx7|LINE|L1	59650.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	7.65503193045361	7.93321611234965	7.68143163047215	7.84495092190556	7.80569759235491	7.54018562948179	7.58479420759247	7.50840260979028	-0.218746334805023	0.220101674406604	0.527850979871551
Merged-chr17-17838364-4	chr17	17838304	17838504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162909, exon 8 of 9)	exon (NM_001162909, exon 8 of 9)	7429.0	NM_001162909	75202.0	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	8.49924624352394	8.75062790331111	8.42924560235444	8.61704450107226	8.55125558132131	8.77846662877963	8.60588821223423	8.29696579549661	-0.0177118085685167	0.917331572969817	0.969512740280612
Merged-chr7-127016781-4	chr7	127016717	127016917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001102563)	TTS (NM_001102563)	535.0	NM_030240	67278.0	Mm.345385	NM_030240	ENSMUSG00000107068	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	5.38910085699352	5.2411330526892	4.99329242412109	5.05068570834618	5.24747472145079	5.59138742872009	5.27536217292779	5.75277063160663	0.551140297165311	0.073588983809332	0.292265945684881
Merged-chr5-86804178-4	chr5	86804100	86804300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347375)	promoter-TSS (NM_001347375)	-66.0	NM_001347375	231386.0	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	8.41958281295304	8.39492894832167	8.36225727194507	8.49184258819555	8.50240135778957	8.3579555302478	8.70915394692285	8.58562708940337	0.157009371997311	0.311841174410746	0.623721459036536
Merged-chr3-100641307-4	chr3	100641199	100641399	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010763, intron 5 of 12)	intron (NM_010763, intron 5 of 12)	44174.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	4.75170860521668	4.75756036653851	4.79335614449255	5.4840189146753	5.03023315211672	4.661357208211	5.08733171563943	5.3886822381424	0.108799191034467	0.781119097758716	0.914785235722602
Merged-chr18-24205477-3	chr18	24205376	24205576	+	939.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160404)	promoter-TSS (NM_001160404)	132.0	NM_013814	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	4.53814628299214	4.23297075992374	4.41860735996878	4.37963287477152	4.31825620221698	4.67012102926846	4.47905487605118	4.1355467840919	0.0396984627175834	0.918605871934896	0.970054173425813
Merged-chr18-26015376-4	chr18	26015275	26015475	+	965.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-261218.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	5.61782709960998	5.35186092774236	5.75361925561019	5.82803592644269	4.71227699971212	5.2039875675809	5.07257798715875	4.90211734893408	-1.25633628827099	6.84004513386382e-05	0.00147312427407955
Merged-chr4-133339430-4	chr4	133339325	133339525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199306)	promoter-TSS (NM_199306)	-110.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	7.26225178290272	7.36230767818573	6.94566393348819	6.64411866050735	7.22197678189402	7.28565487578354	7.012965122046	7.24799533724841	0.168593811996772	0.460810155308907	0.742778563463907
Merged-chr5-148451173-2	chr5	148451073	148451273	+	859.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51269.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	3.28975714894932	3.44990364560574	3.10170021427061	3.05409708496615	3.45463002707518	3.57096217419244	3.33432980632971	3.22866445722438	0.635279493551227	0.242934764517494	0.553871031505147
Merged-chr2-126073898-4	chr2	126073802	126074002	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008008, intron 2 of 3)	intron (NM_008008, intron 2 of 3)	39244.0	NM_008008	14178.0	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	5.38119006300676	5.53032938562146	5.08279860994399	5.49711530273951	5.65217916940532	4.83477630072505	5.57120940188906	5.86404237873609	0.256448612537626	0.450575250750271	0.735357832948579
Merged-chr6-108659819-3	chr6	108659725	108659925	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011498)	promoter-TSS (NM_011498)	-804.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	7.42998188466731	7.44814104264487	7.82174930298433	7.51832076853632	7.3797261723377	7.45323489329056	7.27201824109746	7.56438774409456	-0.187672599627292	0.316639129128894	0.628606475491314
Merged-chr10-78185164-4	chr10	78185054	78185254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029546)	promoter-TSS (NM_029546)	-5.0	NM_029546	110816.0	Mm.103522	NM_029546	ENSMUSG00000032834	Pwp2	6530411D08Rik|Pwp2h|wdp103	PWP2 periodic tryptophan protein homolog (yeast)	protein-coding	7.7349040736527	7.96358295573576	7.3410254080507	7.56406865584299	7.6688113428183	7.73608472662917	7.59194060930585	7.63265375843969	-0.0167694584224985	0.93090761767389	0.97518506813215
Merged-chr17-47629014-3	chr17	47628890	47629090	+	854.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1700.0	NM_198421	224836.0	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	3.75833363347589	3.99538375371481	4.07761782399254	3.75153748989293	4.2789173075966	4.2025858709033	4.23379944337882	4.20911243269489	0.899033749471473	0.0294124358084095	0.165063915601537
Merged-chr3-79075230-4	chr3	79075113	79075313	+	921.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 19 of 23)	intron (NM_001099624, intron 19 of 23)	69674.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	4.70297556691245	4.59941982716244	4.88032963777254	4.9904237905873	4.63428520663447	4.38394098187527	4.68165614998032	4.58168229190532	-0.501431456900659	0.160401982080609	0.448612467931589
Merged-chr2-25628042-4	chr2	25627938	25628138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007995)	promoter-TSS (NM_007995)	-64.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	5.68183266665969	5.78917834328718	5.93940480413396	6.38214657059947	5.34553433863198	5.54140749708054	5.46018240585599	5.75403521696855	-0.775970192959706	0.00920303435903587	0.0743544588696725
Merged-chr3-30968946-3	chr3	30968871	30969071	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165954, intron 1 of 14)	CpG	444.0	NM_001165954	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	5.03448447246653	4.87245861242332	5.36825674976027	4.91778866407184	5.24201890623067	4.98741014299597	5.20176254845061	5.19404037445184	0.219048124479039	0.489208937777926	0.761620931360531
Merged-chr2-153704446-3	chr2	153704336	153704536	+	787.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-36851.0	NM_007896	13589.0	Mm.143877	NM_007896	ENSMUSG00000027479	Mapre1	5530600P05Rik|AI462499|AI504412|AW260097|BIM1p|D2Ertd459e|Eb1	microtubule-associated protein, RP/EB family, member 1	protein-coding	3.13435034067361	3.33720196706968	2.84513648754814	2.88855844309865	3.70966464463266	3.31285256514581	3.55842277982671	3.37150367809462	1.61197510114123	0.00570531194090221	0.052386274334556
Merged-chr13-20784476-4	chr13	20784376	20784576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9637.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	7.19419486617145	7.47267047127646	7.01960698280445	7.11710918816205	7.10905028476347	6.94791985806007	6.91989587544489	7.08794231871739	-0.258592880437625	0.195828273626444	0.496698880677642
Merged-chr16-94370831-4	chr16	94370660	94370860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159620)	promoter-TSS (NM_001159620)	21.0	NM_009441	22129.0	Mm.213408	NM_009441	ENSMUSG00000040785	Ttc3	2610202A04Rik|AA409221|D16Ium21|D16Ium21e|TPRD|mKIAA4119	tetratricopeptide repeat domain 3	protein-coding	6.24417096400913	6.18091976716233	5.69859083430187	5.81127524220335	6.43460642826125	6.64988058544321	6.30581464720837	6.8782931984971	0.878870773937692	0.000723420536165723	0.0103961942951222
Merged-chr8-104293517-1	chr8	104293417	104293617	+	814.333313	f0_balb.idr	promoter-TSS (NM_027022)	promoter-TSS (NM_027022)	-336.0	NM_027022	73381.0	Mm.272746	NM_027022	ENSMUSG00000074127	Cmtm2a	1700001K04Rik|1700041N15Rik|1700063K20Rik|AI449770|ARR19|C32|CKLF3|CKLF4|CKLF5|Cklf|Cklf1|Cklfsf2-1b|Cklfsf2a|UCK-1	CKLF-like MARVEL transmembrane domain containing 2A	protein-coding	3.63742932085475	3.35605693623258	3.86265615409477	3.70583320602963	3.30969969904544	3.41586573777992	3.22672215608867	3.42219186886168	-1.05819880850234	0.0459260612344299	0.219951558351491
Merged-chr15-80497918-4	chr15	80497819	80498019	+	937.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163189, intron 4 of 5)	ORR1A2|LTR|ERVL-MaLR	-59316.0	NR_155274	102633578.0	Mm.397484	NR_155274	ENSMUSG00000115888	Gm31369	-	predicted gene, 31369	ncRNA	5.33780638723894	5.8424240639746	5.52192217651049	5.38841847783736	4.84293519491652	4.6865329757836	4.36716407322657	5.18579166546135	-1.3802836423176	0.000139534331079797	0.00268575288045669
Merged-chr6-15842058-4	chr6	15841950	15842150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121389.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	5.71833768367469	5.26621695482091	5.3881852226322	4.66765088317931	5.68648934225215	5.50432493889283	5.38968883931152	5.38439967293595	0.360387468064932	0.302493315834956	0.614947925850864
Merged-chr11-80154869-5	chr11	80154742	80154942	+	849.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 1 of 10)	intron (NM_172133, intron 1 of 10)	680.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	3.90339608271697	3.64897743256607	3.74113082738778	3.15899630596514	3.6349187753056	4.39076182827015	4.15913325398209	4.33189078201502	1.45226269269982	0.00575695477305585	0.0527244317796375
Merged-chr10-8736152-4	chr10	8736082	8736282	+	861.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 16 of 19)	L1MB2|LINE|L1	149888.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.79778672253233	3.90773565800248	4.06678942097613	4.42729621462491	4.36836237976896	3.97819362744469	4.45611160846112	3.96358272834106	0.312383164521927	0.507255481951189	0.772710503440438
Merged-chr10-128702805-4	chr10	128702710	128702910	+	797.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183417, intron 3 of 7)	RSINE1|SINE|B4	2241.0	NM_183417	12566.0	Mm.111326	NM_016756	ENSMUSG00000025358	Cdk2	A630093N05Rik	cyclin-dependent kinase 2	protein-coding	3.60787321648905	3.32857803505739	3.50247667133005	3.55042908200356	3.69667876897927	3.67262298051905	3.31429283150561	3.50058400158751	0.184215540312043	0.715113209755064	0.886010584897636
Merged-chr7-3712545-4	chr7	3712468	3712668	+	922.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011095)	TTS (NM_011095)	7814.0	NM_001357394	18733.0	Mm.326531	NM_011095	ENSMUSG00000058818	Pirb	Gp91|LIR-3|Lilrb3|PIR-B	paired Ig-like receptor B	protein-coding	4.37917434936638	4.6692309554843	4.37985662024034	3.77922553894294	4.68008713806563	4.83606670122195	4.56783573935361	4.54740658314089	0.748755845065176	0.0774288037440962	0.300993598004456
Merged-chr11-79307207-4	chr11	79307101	79307301	+	941.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32691.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	4.40074021080851	4.6568045008154	4.57972234445018	5.07470636963588	4.81045468873484	4.71211016596889	4.38243395273641	4.7694922012293	-0.0907965856811581	0.815992734881804	0.929141221163506
Merged-chr14-60910342-4	chr14	60910226	60910426	+	715.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	125760.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	3.5383764344588	3.25264346415732	3.69718596590058	3.41587090874996	3.42683492289508	3.59860296923091	3.77567752546694	3.87910984914292	0.628009135277122	0.216741639490937	0.523443597778489
Merged-chr5-64212366-4	chr5	64212306	64212506	+	980.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-17951.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.89954017856354	5.06397772902249	5.59795389450031	6.01175655343811	5.18751244417317	4.99980854070727	4.70722937306262	5.21641826295771	-0.799719881754456	0.0410398101749835	0.204904627353084
Merged-chr11-51059346-4	chr11	51059244	51059444	+	834.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347495)	promoter-TSS (NM_001347495)	87.0	NM_001347495	21408.0	Mm.4792	NM_009329	ENSMUSG00000020364	Zfp354a	AW488485|Tcf17|Znf354a|kid1	zinc finger protein 354A	protein-coding	3.78921656131609	4.24471381246495	4.13810335137456	4.22555536544456	3.854649016422	4.07281717970939	4.0303120178945	3.7877122405467	-0.492422486260276	0.264676819973448	0.576566406596513
Merged-chr1-14505094-3	chr1	14504966	14505166	+	669.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-194867.0	NM_010164	14048.0	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	3.41128135133982	3.03368974238936	3.25379425435244	3.31522054354208	2.91765757272999	3.36703541079168	3.18443929602129	3.00638978233486	-0.529161189024499	0.366625012137566	0.671003618804859
Merged-chr12-4769133-4	chr12	4769044	4769244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361147)	promoter-TSS (NM_001361147)	123.0	NM_175431	207921.0	Mm.184898	NM_175431	ENSMUSG00000050545	Fam228b	A830093I24Rik	family with sequence similarity 228, member B	protein-coding	7.15053128187206	7.06931411781684	7.9206347294528	6.99027980465901	6.81685244993212	7.37439225342556	6.98230006915187	7.24658908265188	-0.294416301204817	0.268177865006191	0.580051737028632
Merged-chr8-123849539-2	chr8	123849440	123849640	+	766.666626	f0_balb.idr|f1_balb.idr	intron (NM_028536, intron 2 of 3)	RLTR17|LTR|ERVK	10669.0	NM_028536	73420.0	Mm.157746	NM_028536	ENSMUSG00000031971	Ccsap	1700054N08Rik|AI853424	centriole, cilia and spindle associated protein	protein-coding	3.48852819729433	3.68687042524576	3.6218438612349	3.07866587709004	2.57991347199379	2.70588623405885	2.67254515793315	2.75976608576185	-4.97183457989121	2.67647365194442e-06	8.53151446805875e-05
Merged-chr6-98997906-4	chr6	98997812	98998012	+	845.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 8 of 17)	intron (NM_001197321, intron 8 of 17)	30386.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	3.45269061254855	3.59554725723467	4.05735526903078	4.02292528170437	3.21524273171792	3.69379603199916	3.77405066226045	3.83659469055237	-0.488268135498112	0.374750437566935	0.677891254741963
Merged-chr3-138527996-4	chr3	138527889	138528089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007917, intron 2 of 7)	CpG	721.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	5.2245100297081	5.69960425747104	5.71182534401139	5.68749288882377	6.07658641015597	6.13650734625145	5.8475742056498	5.57457697643175	0.532802331525748	0.0606418574283916	0.260152866618826
Merged-chr13-92963714-3	chr13	92963658	92963858	+	768.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109546.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	2.63066398402395	2.77459154770202	2.8601085616514	2.54165233493504	3.50799080317077	3.17182372410659	3.36373534275084	3.17197769838405	2.76772853887136	9.5190499105464e-06	0.000263230945447856
Merged-chr7-81849858-2	chr7	81849739	81849939	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-9162.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	4.98192660583957	4.85238229097998	4.9827594648259	5.41653938698772	4.63504549182949	5.01185982140716	4.85090691969467	5.2585063714947	-0.279689409081595	0.435481109169051	0.724637878005047
Merged-chr19-17339782-3	chr19	17339682	17339882	+	998.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136484)	promoter-TSS (NM_001136484)	-277.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	5.32071134449596	4.87230536495833	5.05185074688852	4.97613337399754	4.40208235069893	4.57877253082666	4.42593346179719	4.44274864958581	-1.27885542137519	0.00032561436700058	0.00542530548425428
Merged-chr2-51387358-4	chr2	51387262	51387462	+	871.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50538.0	NR_130155	73375.0	Mm.396227	NR_130155	ENSMUSG00000086007	1700057H21Rik	-	RIKEN cDNA 1700057H21 gene	ncRNA	4.85809105662122	4.43686492417914	4.92426636667481	5.3539553895539	4.23576849496485	4.5082708784137	4.73100226551596	4.04502512301829	-1.17362550650513	0.00663300005164261	0.0584681499289003
Merged-chr1-91052349-3	chr1	91052262	91052462	+	926.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-1082.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	3.20321178185557	3.68704290896357	3.26699883227104	3.52785731279216	3.40271964938681	3.5559304010168	3.42920332436469	3.44056854116888	0.0383615069362365	0.942276088203533	0.979070852537652
Merged-chr4-135067313-4	chr4	135067209	135067409	+	808.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53336.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	4.0678487899041	4.18082579064004	3.79776457604086	3.86314090692363	4.35358592394049	4.33450916652864	3.95047928976939	4.44394821565233	0.775663373106741	0.0677038307910591	0.277789426555038
Merged-chr5-136186934-4	chr5	136186836	136187036	+	860.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025774, intron 5 of 5)	intron (NM_025774, intron 5 of 5)	12018.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	3.94272513761435	3.96083457535051	3.85133713335176	3.30270063853874	3.90238804741027	3.64596035256354	3.78635370683107	3.39837339031246	-0.249396743849758	0.641565371905642	0.848794290196682
Merged-chr18-39446818-4	chr18	39446722	39446922	+	947.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	40423.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.50326999285387	4.95638799923431	4.75523408719662	4.47483430208064	5.04699339192333	4.72696422486622	5.06246617705519	4.67372343050966	0.449572791466855	0.210010561903586	0.514484230514723
Merged-chr18-43509148-4	chr18	43509034	43509234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70848.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	7.67342470391364	7.58579034168562	7.81497114866349	7.70044829857041	7.55750812674897	7.77548588854166	7.70908688753423	7.2527111210591	-0.142357770198023	0.447055900852003	0.732729850942819
Merged-chr6-17410454-6	chr6	17410412	17410612	+	904.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR81|LTR|Gypsy	-53445.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	4.12174948301137	4.26983731164744	4.69306963465531	3.99238502688966	4.96195419454254	4.30538637737582	4.77128338889536	4.61697239034278	0.922378920151029	0.0269687317547032	0.156179916814581
Merged-chr17-26009678-4	chr17	26009565	26009765	+	896.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162868, intron 5 of 13)	intron (NM_001162868, intron 5 of 13)	12195.0	NM_153140	215445.0	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	3.96128938276373	4.22761744864778	4.34140696476859	3.77914857957547	4.52488558000085	4.33908852586658	4.09975038648508	4.33858659883009	0.642674278906448	0.133311961231857	0.406638366694222
Merged-chr18-6240848-3	chr18	6240760	6240960	+	988.388855	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_008448, intron 1 of 25)	CpG	664.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	4.71157212264121	5.23391311084923	4.82787168848098	5.06440661316272	4.62873842358522	4.80602600203904	4.90987046010488	4.53747329835546	-0.532554775378992	0.128624164038397	0.399048782433028
Merged-chr5-30344083-3	chr5	30343985	30344185	+	853.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033460, intron 2 of 15)	intron (NM_001033460, intron 2 of 15)	2422.0	NM_001033460	381738.0	Mm.389604	NM_001033460	ENSMUSG00000073102	Drc1	Ccdc164|Gm1060|b2b1654Clo	dynein regulatory complex subunit 1	protein-coding	4.06897399166526	4.31317053574864	3.70301369818102	4.02486480825067	3.61136474331412	4.23989247970807	4.00556105788715	3.87055326959548	-0.276906194764469	0.561558657349585	0.80494560024742
Merged-chr10-86948694-2	chr10	86948594	86948794	+	766.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 17 of 68)	L2a|LINE|L2	59248.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	3.41240850913001	3.47183558688367	3.52026083829466	3.09178299655395	3.37460142137492	3.4703075940796	3.55529869606936	3.29414826344356	0.185761709196403	0.727865962331516	0.891717234643631
Merged-chr1-82283286-4	chr1	82283209	82283409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010570, intron 1 of 1)	CpG	8130.0	NM_010570	16367.0	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	6.62417423369334	6.59009610107953	7.07704907882322	6.75505120872816	6.20611019078901	6.58269851866576	6.66658359332825	6.57311364911204	-0.380861676612213	0.102482966013876	0.351644491041765
Merged-chr4-154907972-4	chr4	154907884	154908084	+	846.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8941.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	3.80140163547894	3.86320419894257	3.75032999306283	3.70295714323812	3.92245926224402	3.86922214449115	3.88245400294036	3.58024250276952	0.1419316701417	0.753806089011767	0.9028447998413
Merged-chr18-9492285-4	chr18	9492190	9492390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAGGA)n|Simple_repeat|Simple_repeat	-42136.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	6.67874845080789	6.17220745049953	6.76234705730059	6.94702237112137	6.39012571357024	6.20330851917466	6.23035272826224	6.11137308163587	-0.642938754711138	0.0114688755637397	0.0869987849196511
Merged-chr2-27688166-4	chr2	27688068	27688268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	10967.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	7.52799039621291	7.1842851980384	7.04939237765688	7.37084343010943	7.03277892869374	6.91924017062945	7.22970072964001	7.04442792983706	-0.32310830248018	0.107669765252396	0.361859682747073
Merged-chr18-57052320-3	chr18	57052226	57052426	+	944.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76947.0	NM_029909	77422.0	Mm.256874	NM_029909	ENSMUSG00000024592	C330018D20Rik	AU018666	RIKEN cDNA C330018D20 gene	protein-coding	3.9695330727563	4.10621140756398	4.01605638037777	4.22621723333722	3.89099649397716	3.70976887337322	3.69806264117634	3.59085765170918	-1.01838075835333	0.0264880284473846	0.15440097505275
Merged-chr9-47530194-4	chr9	47530090	47530290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310841)	promoter-TSS (NM_001310841)	20.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	7.35312172414238	7.41780170799338	7.20201185387006	7.12677105061983	7.63997486528909	7.72108245589318	7.48038683522316	7.42864950849043	0.401692197477671	0.0292285618910936	0.164411238094369
Merged-chr18-60747158-5	chr18	60747091	60747291	+	819.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348101)	promoter-TSS (NM_001348101)	-445.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	4.61108846753356	4.90878315929179	4.61181964060879	5.30397179127118	4.61827471285576	4.35609141433868	4.50515280608248	4.93819655115341	-0.599847792049127	0.132990109402143	0.406105758986762
Merged-chr15-79757284-4	chr15	79757192	79757392	+	952.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045069, exon 4 of 4)	non-coding (NR_045069, exon 4 of 4)	14594.0	NR_045069	100504191.0	Mm.421420	NR_045069	ENSMUSG00000087543	Gm16576	-	predicted gene 16576	ncRNA	4.8279136256966	4.93427221550416	4.8286200247201	5.25303201262213	5.37707260960388	5.26818963185476	5.78874244579635	6.01708725092195	1.20333843198646	0.000573235491773438	0.00861353790773518
Merged-chr11-16507581-4	chr11	16507500	16507700	+	961.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011343, intron 1 of 3)	intron (NM_011343, intron 1 of 3)	884.0	NM_011343	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	4.42069954583324	4.75185745976409	5.09992217011079	4.81871180500096	4.87244048204851	4.69554299647004	4.62695959369969	5.09635734509797	0.0869281841677896	0.811027921232524	0.926868590231843
Merged-chr1-136129434-3	chr1	136129332	136129532	+	851.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046167, exon 3 of 4)	non-coding (NR_046167, exon 3 of 4)	1751.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	3.70484080421576	3.89547165570505	3.65083731431771	3.52649343720401	3.62157807125018	4.07083148023129	3.58039145880544	3.8057039346768	0.249839648391392	0.604702492015527	0.828509474255204
Merged-chr1-57977022-2	chr1	57976922	57977122	+	634.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6938.0	NM_001159865	51960.0	Mm.339711	NM_030211	ENSMUSG00000054770	Kctd18	4932411A20Rik|6530404F10Rik	potassium channel tetramerisation domain containing 18	protein-coding	3.26555522658643	3.26109277127225	3.84708325165459	3.35186218622468	3.4338642045429	3.37947996270311	3.12756559647382	3.20170700148481	-0.542596516275422	0.34135014334032	0.650430858980871
Merged-chr10-71238131-4	chr10	71238027	71238227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009360)	promoter-TSS (NM_009360)	-83.0	NM_009360	21780.0	Mm.229292	NM_009360	ENSMUSG00000003923	Tfam	AI661103|Hmgts|mtTFA|tsHMG	transcription factor A, mitochondrial	protein-coding	7.88533920881491	8.05591514946031	7.72597437967341	7.9387072493228	7.77445289133011	7.68092668051461	7.99691767854534	7.4174198231144	-0.22586288092576	0.234585197397283	0.544447848974703
Merged-chr6-28621691-4	chr6	28621597	28621797	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 10 of 23)	intron (NM_019776, intron 10 of 23)	141349.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	3.9452368679838	3.89418293730055	4.0000085215289	4.41767641818579	3.85259820099553	4.17810588490434	4.42419013819157	4.71163048626401	0.564488630914327	0.238856630695577	0.549252959755781
Merged-chr15-80091278-4	chr15	80091209	80091409	+	881.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009303)	promoter-TSS (NM_009303)	-25.0	NM_009303	20972.0	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	4.18693075791213	4.41018335477486	4.47905547235735	4.06696643577705	4.27476139184855	4.16362118782321	4.38184949591929	3.92772544708221	-0.209730129365101	0.616562833981197	0.835071088022751
Merged-chr11-54072797-4	chr11	54072711	54072911	+	806.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3794.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	3.70412714399841	3.84534437367732	3.20975865123394	3.36208659735956	3.65838337195368	3.92568052795319	3.68910062974798	3.84861208125245	0.706455329582591	0.172042772112166	0.465252629537357
Merged-chr4-95711487-4	chr4	95711382	95711582	+	795.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 6 of 10)	intron (NM_029347, intron 6 of 10)	132061.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	3.57982075532689	3.18960060156336	3.41089767138753	3.93238938909557	3.56527293949421	3.4626186170294	3.61715411218002	3.67982121605115	0.0297899230196669	0.957023546606	0.984757116793997
Merged-chr3-51228218-4	chr3	51228138	51228338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009834, intron 1 of 2)	B3|SINE|B2	3791.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	5.42511571899203	6.02921714931974	5.42604840831311	5.4749909702861	5.55024370447034	5.41068905346801	5.82669768284423	5.59137234279168	-0.0203274248303172	0.945854196673336	0.980641198659378
Merged-chr10-81408296-2	chr10	81408196	81408396	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 4 of 8)	intron (NM_026756, intron 4 of 8)	-1279.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	3.40249276137089	3.96768690906306	3.20569088946421	3.36914864761051	3.64098701772564	3.57927709115433	3.39067730944109	3.81609401317185	0.299402530237821	0.589419957500674	0.820464677958613
Merged-chr10-10429251-4	chr10	10429146	10429346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 9 of 36)	intron (NM_001127353, intron 9 of 36)	43068.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	6.17885150563635	6.31518241288838	6.22075271016331	6.59674712229271	6.41817526034732	6.5476208080408	6.16884873373385	6.53392513784114	0.0988025868478733	0.678397823439986	0.868080722088702
Merged-chr2-57116106-4	chr2	57116007	57116207	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139509, intron 1 of 7)	intron (NM_001139509, intron 1 of 7)	-1069.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	4.4703881382617	4.4915545283773	4.47108925418942	4.57367571647392	4.43140858894378	4.21070478407036	4.64206924407834	4.58754007626998	-0.066214249730902	0.857603006713319	0.946378785384133
Merged-chr1-39578695-4	chr1	39578596	39578796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1349.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	7.70622540491972	8.16390061765795	8.21493154472426	7.86503581621763	8.10778080630728	8.2473063709914	7.95196842252195	7.84010170985143	0.057100375793542	0.766297452472004	0.908586859833169
Merged-chr15-67312824-1	chr15	67312724	67312924	+	637.0	f0_balb.idr	intron (NR_045140, intron 5 of 8)	intron (NR_045140, intron 5 of 8)	86055.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	2.80873569303483	2.90959777934891	2.8090807873877	3.20390462865426	2.72863925947519	2.48476241138497	2.5356859970982	2.68097335904379	-1.68187285954605	0.021039471601743	0.132453878881365
Merged-chr12-113141527-4	chr12	113141417	113141617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347443, intron 1 of 6)	intron (NM_001347443, intron 1 of 6)	912.0	NM_001347443	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	5.53979324652409	5.82840182669739	5.94062955004	5.97598467326868	5.53002290882226	5.49877017567136	6.32285913733112	5.70174416319125	-0.0502651065300063	0.870006970033879	0.95118203952818
Merged-chr2-73553064-4	chr2	73552970	73553170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23583.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	6.58567893552178	6.69251835647863	6.26632834625721	6.14788142763244	6.3011890522907	6.4425961804279	6.23423088123263	6.00752553674387	-0.264920503747582	0.29178097334398	0.604179720775306
Merged-chr18-77713490-3	chr18	77713309	77713509	+	928.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027978)	promoter-TSS (NR_027978)	601.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	3.54355255250634	3.65121182305039	3.54400409943686	3.72085909106986	3.80907123581798	3.60008279761975	3.63896999706024	3.75216225345971	0.250375597726878	0.594427618677215	0.823411261518897
Merged-chr11-121704249-5	chr11	121704207	121704407	+	816.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	1880.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	3.63294819597138	3.48889415323238	3.4749466498361	3.05494111111711	3.69906731752144	3.64760976657892	3.34532964791698	3.5279735666256	0.482807503176087	0.372205249039644	0.676099595682082
Merged-chr8-41243288-1	chr8	41243188	41243388	+	615.0	f0_c57.idr	intron (NM_023662, intron 1 of 37)	intron (NM_023662, intron 1 of 37)	3529.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	2.59342398974218	2.31235269858005	2.44163033684488	2.22489751658174	3.24344092251996	3.08481012582453	2.72040316349773	2.72942689252123	3.15921107572796	2.85094445396405e-05	0.000694956764687354
Merged-chr16-91462888-4	chr16	91462774	91462974	+	985.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-2230.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	5.1787750872252	5.18407696321721	4.81061855009463	4.91129940472421	5.144341755284	4.86606491729304	4.86294991037611	4.64190457289311	-0.242011121837063	0.477753710654464	0.75391370040957
Merged-chr5-12044757-4	chr5	12044657	12044857	+	955.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126714.0	NM_001177510	545732.0	Mm.389066	NM_001177510	ENSMUSG00000067848	4933402N22Rik	-	RIKEN cDNA 4933402N22 gene	protein-coding	4.85869472270841	4.610377458834	5.20991120790798	5.82167023452489	5.23938654267314	5.28916261275937	5.12162446162874	4.8562876387743	-0.17115572032657	0.673664912927208	0.865848986388019
Merged-chr15-8629444-4	chr15	8629389	8629589	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81318.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	4.72604697516008	4.66252799114848	5.19463380077034	4.8643442899011	4.74282979268728	4.77833178590627	5.2487599058716	4.72373284488518	0.0305901022689236	0.931909162019218	0.975397745055384
Merged-chr9-106892048-4	chr9	106891964	106892164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029103)	promoter-TSS (NM_029103)	-126.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	8.45661669422221	8.52636185401998	8.46313254825604	8.34338654629559	8.88766153399547	8.73528822970939	8.94228090134693	8.6702879094683	0.464409734158814	0.00221982224847052	0.0253415762347848
Merged-chr18-66476532-4	chr18	66476431	66476631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17927.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	6.69288797930997	7.10560761416509	6.53638937756092	6.35670169200759	6.70927616576979	6.60917773081438	6.99435979244403	6.27181157654042	-0.035921072255018	0.892301008052119	0.959638462748584
Merged-chr4-115847639-4	chr4	115847586	115847786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285487, intron 2 of 14)	intron (NM_001285487, intron 2 of 14)	8488.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	7.41863844427746	7.50610341672446	7.30762845599478	7.30220647784948	7.45172632094496	7.7265394837325	7.17158127822392	7.65382976078201	0.175091776814617	0.371154094782983	0.675213976711571
Merged-chr14-121437232-4	chr14	121437117	121437317	+	789.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57987.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	4.14429307610498	4.1055129691344	4.62530893312061	4.32296257362256	4.14081136389336	4.45447678837006	3.97438736606711	4.19010323975487	-0.287476143353669	0.49439064350414	0.765035470275187
Merged-chr17-14826912-4	chr17	14826802	14827002	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175173, intron 24 of 24)	intron (NM_175173, intron 24 of 24)	116222.0	NM_175173	71682.0	Mm.122698	NM_175173	ENSMUSG00000046991	Wdr27	0610012K18Rik	WD repeat domain 27	protein-coding	5.40853444567233	5.35331368019968	5.34182401426679	4.75050659318191	6.42820501870848	6.55643174945193	6.30193342197402	6.19539721377384	1.90841101752251	1.37665504400438e-11	1.21574354065989e-09
Merged-chr19-5849996-4	chr19	5849904	5850104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026169)	TTS (NM_026169)	-4524.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	6.54817055270369	6.53815934341465	6.06664639228869	6.17746354503628	6.48168112275313	6.4317165328451	6.33455107983285	6.28922905903991	0.0700820927178292	0.766888426728087	0.908757742622047
Merged-chr3-8664727-4	chr3	8664630	8664830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010423, exon 5 of 5)	exon (NM_010423, exon 5 of 5)	2308.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	6.83723135078223	6.49006003101548	6.23205631244254	6.90710156389221	6.82568440268132	6.71506487655304	7.07741588949522	6.64659772047321	0.241686042812112	0.321486877754909	0.633178683838219
Merged-chr15-7137105-4	chr15	7137030	7137230	+	905.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113386, intron 2 of 16)	intron (NM_001113386, intron 2 of 16)	-3412.0	NM_013584	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	4.08538449228001	4.39173550146473	3.85922629123723	4.75834731010443	4.45807729976827	4.31264702950809	4.21543577217465	4.40496456372225	0.0298263402310012	0.948077188427503	0.981359015857754
Merged-chr3-115818905-4	chr3	115818821	115819021	+	968.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69138.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	5.55673946128986	5.32117542759766	5.13983915498825	5.69154368925975	5.35054201041809	5.04935647689499	5.7166059753626	5.30158955725982	-0.139841525654771	0.661563444235038	0.859452900113265
Merged-chr9-111035837-4	chr9	111035736	111035936	+	956.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008522, intron 14 of 16)	intron (NM_008522, intron 14 of 16)	16544.0	NM_008522	17002.0	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	5.18868397490668	4.6578313947465	4.59466992622566	4.76949250816403	4.73846636640941	4.8976165493652	4.91971775606686	5.09943400169652	0.194689399500001	0.577354906239981	0.814090306448239
Merged-chr14-21848388-4	chr14	21848325	21848525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_176925, exon 1 of 3)	5' UTR (NM_176925, exon 1 of 3)	485.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	5.16779071305329	5.38543612994032	5.10453589992408	5.01317215692727	5.03095545487043	5.31020966208598	5.20368421846394	4.63090096443084	-0.196753317817449	0.555566781416953	0.801586928313244
Merged-chr11-59941632-4	chr11	59941529	59941729	+	733.858337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6518.0	NR_045273	100504121.0	Mm.383770	NR_045273	ENSMUSG00000085260	Med9os	1700013G23Rik	mediator complex subunit 9, opposite strand	ncRNA	4.37408946379681	4.1487951549539	3.82585232129657	4.30891844253858	3.94151159124273	3.88793196691767	3.97012464571179	4.12714199672453	-0.538643964460778	0.21718862356309	0.523995275425022
Merged-chr13-58129287-1	chr13	58129187	58129387	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_029872)	promoter-TSS (NM_029872)	-731.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	5.86598339056237	6.19157796890947	5.86701937867375	5.55283082349431	5.84374072853422	6.53593301907189	5.83703888513775	6.39010544541045	0.471936005976801	0.112741283736835	0.371288758709039
Merged-chr18-8757593-2	chr18	8757493	8757693	+	978.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-455263.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	2.49809101903605	2.30062355612203	2.42287343906993	2.41287185419564	3.01384917898055	2.81142102659922	2.8111772865416	2.82136096254813	2.38457489924792	0.000682198333089102	0.00991388222763356
Merged-chr1-136570747-4	chr1	136570655	136570855	+	955.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54146.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	4.94047386957417	4.65479775146013	4.66343264052102	5.15342361697079	5.16177913731859	4.88547368810379	5.36027833921683	5.07322403166644	0.470489157120101	0.174561738348613	0.469049829139898
Merged-chr15-31331949-4	chr15	31331863	31332063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	MLT1A0|LTR|ERVL-MaLR	35796.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	6.6031513170556	6.41724306296684	6.97441548850736	6.76189915623729	6.28721597938468	6.25677159112338	6.49151904683956	6.38182346027015	-0.511072335958464	0.0255813284011738	0.150857777486922
Merged-chr12-4593028-4	chr12	4592946	4593146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198968)	promoter-TSS (NM_001198968)	38.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	4.99479033262725	5.36419037721604	4.88739215227007	5.15328684752679	5.05916241035868	4.94655877799414	4.82648576680939	4.95723426177403	-0.319366925317022	0.321715241763213	0.633233286881578
Merged-chr14-10453122-4	chr14	10453019	10453219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	339.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	6.51045772996276	6.87174808583027	6.10286732654667	6.22406825791935	6.75484390863509	6.95541363522399	6.60415683114066	6.22914079921528	0.29452427055708	0.2801800349162	0.592253666749477
Merged-chr11-120579873-3	chr11	120579772	120579972	+	862.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133796, intron 3 of 5)	intron (NM_133796, intron 3 of 5)	1748.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	3.49041254841456	3.7205800751716	3.79812872326154	3.41940073151319	3.69025219034735	3.54667942965998	3.35848564924632	3.6516037236132	-0.113992790959392	0.821302384765266	0.931619087929607
Merged-chr1-20891176-4	chr1	20891071	20891271	+	942.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040492)	promoter-TSS (NR_040492)	623.0	NM_028829	74229.0	Mm.40780	NM_028829	ENSMUSG00000025931	Paqr8	1700019B16Rik|3110001D06Rik	progestin and adipoQ receptor family member VIII	protein-coding	4.92423011907935	4.90459788109203	5.05360559230623	4.61870853173449	4.9178723812388	4.71035134957318	4.72124900846738	4.74031079874008	-0.175979587705132	0.60863398650853	0.83071828428937
Merged-chr4-41589944-3	chr4	41589846	41590046	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175138, intron 1 of 19)	intron (NM_175138, intron 1 of 19)	20152.0	NM_175138	68922.0	Mm.79127	NM_175138	ENSMUSG00000061322	Dnaic1	1110066F04Rik|BB124644|Dnai1|b2b1526Clo	dynein, axonemal, intermediate chain 1	protein-coding	3.5352896227106	3.75656882241894	3.73431678954295	3.74557410999134	4.50768666292554	3.85897935538647	4.70213744410728	4.47073082400806	1.86285391344991	6.60669116759267e-05	0.00143065917437809
Merged-chr17-71616131-4	chr17	71616008	71616208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175639)	promoter-TSS (NM_175639)	-107.0	NM_175639	72515.0	Mm.257762	NM_175639	ENSMUSG00000041057	Wdr43	2610318G08Rik|AU020887|AV024208|Wrd43|mKIAA0007	WD repeat domain 43	protein-coding	7.61288399278223	8.00113735860308	7.77501237656527	7.78642214390654	7.95666230860272	8.18394080836781	8.03224827209986	7.68768781983391	0.22406506365397	0.226425672338301	0.535042066048626
Merged-chr11-97357792-3	chr11	97357689	97357889	+	964.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4762.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	3.52858903434739	3.40470864763244	3.2508941945403	3.35795058990268	4.4374998358041	4.37558343592485	3.94007500171193	3.58886950882869	2.17271356381211	3.05801818978592e-05	0.000739105863262385
Merged-chr3-116594910-4	chr3	116594799	116594999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289571)	promoter-TSS (NM_001289571)	-12.0	NR_152258	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	7.54032974178688	7.37167644234343	7.4597826872958	7.3954998138399	7.49766424105049	7.49792983789041	7.39445808473266	7.13542733591182	-0.0625890917833659	0.73197426337411	0.893842682027583
Merged-chr6-7738071-4	chr6	7737964	7738164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D5|LTR|ERVK	-44882.0	NM_012055	27053.0	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	7.62641645111459	7.97040601432096	7.85614471897087	7.13756294725957	7.70763043017787	7.85591916307157	7.65741493441939	7.64813677496473	0.0558516373954545	0.801063578034603	0.923337043240231
Merged-chr2-57239301-4	chr2	57239220	57239420	+	838.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010274, intron 1 of 16)	intron (NM_010274, intron 1 of 16)	938.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	3.6734852755757	3.39165862193957	3.51175660860052	3.71329196940376	3.60370527181292	3.79187274994277	3.49871244252628	3.72161634605151	0.215269475182008	0.659405076861296	0.858262365203983
Merged-chr3-8746844-4	chr3	8746757	8746957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79819.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	6.89078636034252	6.78848516616943	6.46126364187226	6.88563808672411	6.39978275913923	6.44904295397212	6.52980035880341	6.71214231067796	-0.362457433526733	0.0990754484707081	0.345098671235455
Merged-chr17-70851864-4	chr17	70851769	70851969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009372)	promoter-TSS (NM_009372)	-135.0	NM_001164075	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	8.22358855689722	8.59501526744878	8.25432822329253	8.27603810867831	8.30000535962947	8.43205088531112	8.40353172182528	8.06120561402911	-0.0508804800687217	0.770825222168112	0.910321191255463
Merged-chr9-44089053-4	chr9	44088977	44089177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198091, intron 1 of 11)	intron (NM_198091, intron 1 of 11)	4157.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	6.43275680006558	6.26237217860474	6.331096844781	6.6010321730937	6.19783980138903	6.06495885501331	6.08627441608773	6.07014346323727	-0.476287868602056	0.0384625739721657	0.196746197693841
Merged-chr17-7915083-4	chr17	7914964	7915164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10936.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	6.60003878666222	6.68933853222084	6.9940927663129	6.94447255781329	6.81513165084854	6.97526528260208	6.76441991532999	6.7067491820552	-0.0100745384362272	0.96165886974023	0.986267404712186
Merged-chr10-59292760-4	chr10	59292670	59292870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30526.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	6.00674142374393	5.91789699591909	5.48739022519308	5.86894220373023	5.81803241818089	5.83516016655117	5.82716404999363	5.68154056627637	-0.0750171481562538	0.77311079692689	0.911201043423949
Merged-chr6-129472171-4	chr6	129471996	129472196	+	929.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020008, intron 1 of 5)	intron (NM_020008, intron 1 of 5)	683.0	NM_001309637	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	3.90916392159897	3.61530256802602	3.68802805191147	3.86742242299048	4.21511863305764	4.03237927541479	3.99046538616113	4.33574259682767	1.0009105223364	0.0227303191408297	0.139283865885427
Merged-chr4-62519072-2	chr4	62518972	62519172	+	863.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008525, intron 1 of 11)	intron (NM_008525, intron 1 of 11)	837.0	NM_001276446	17025.0	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	2.90737808283428	2.73556465934693	2.6877629860521	2.51808129815166	2.2161994539502	2.4511645188137	2.34116914818705	2.49259657639686	-2.06464021666681	0.00992894412525522	0.0785256884228412
Merged-chr10-127626653-4	chr10	127626615	127626815	+	721.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-5567.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	3.96736389508266	4.2996591182945	4.14874878843744	3.76602171314066	3.88026483227282	4.13850598821862	3.85146292260542	3.69921721350358	-0.426675956294682	0.358904725102906	0.664840063190625
Merged-chr1-156684238-3	chr1	156684131	156684331	+	998.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145413, intron 7 of 7)	LTR41B|LTR|ERVL	-9892.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	4.75748084567496	4.35470098422937	4.45527633218327	4.87175282817196	3.91363005465838	3.82821595474141	3.5519763725355	3.7668281866054	-2.276354529167	1.88181588633812e-06	6.20382173075016e-05
Merged-chr6-134927284-5	chr6	134927226	134927426	+	945.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1766.0	NR_037956	381822.0	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	4.35234351036683	4.49600071730065	4.73800206336059	4.67687270409224	4.61121088647704	4.9095670591946	4.7154725413815	4.9071316635638	0.429998047655393	0.225492795763776	0.533926073971919
Merged-chr2-90453606-2	chr2	90453506	90453706	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 11 of 23)	intron (NM_008982, intron 11 of 23)	25568.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	2.2201840240825	2.42902826939347	2.44131339131615	2.55144384367992	2.39173892982088	2.61151125584949	2.56097187078516	2.62906787959818	0.675705562946655	0.354302995647595	0.661031778977135
Merged-chr15-79690609-4	chr15	79690516	79690716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013818)	promoter-TSS (NM_013818)	-280.0	NM_013818	14904.0	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	9.00920385225582	9.09212032546955	8.99658215004059	8.95664693198683	8.86448305728336	8.89077747062534	8.92094129543083	8.94436674476366	-0.135063165824962	0.322417529062493	0.633942634212845
Merged-chr15-58988977-4	chr15	58988873	58989073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	55163.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	7.16074596380646	6.73944469310056	7.30792536617512	7.394151337518	6.72753774118941	7.12225608554164	6.78626698195993	6.99177431947701	-0.372671120598548	0.100966095795696	0.348744146510806
Merged-chr1-38129226-2	chr1	38129152	38129352	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001359288, intron 1 of 25)	CpG	414.0	NM_001359287	56210.0	Mm.389103	NM_019570	ENSMUSG00000026082	Rev1	1110027I23Rik|AU022044|Rev1l	REV1, DNA directed polymerase	protein-coding	5.10616122503193	5.0151461158707	5.25762236910129	4.95974383601126	5.08510209467766	5.14630739634498	4.98307679549559	4.81827470411521	-0.119507651977669	0.703913952665866	0.880925455128412
Merged-chr9-58271358-4	chr9	58271253	58271453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18189.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	7.38589349152338	7.16988834191606	6.9568412483944	6.99536764115869	7.52627899950542	7.45378848514618	6.9614000725359	7.22940722776118	0.248918645221076	0.247200435509102	0.558196808549661
Merged-chr2-75733424-4	chr2	75733345	75733545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28782.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	7.5288796138365	7.65113433704073	7.47436554864821	7.46549041738732	7.66788427905642	7.50031050973616	7.41844036599191	7.62117996299844	0.0400999393623188	0.817657369420816	0.929981783742416
Merged-chr10-85917076-4	chr10	85916945	85917145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302886)	promoter-TSS (NM_001302886)	-59.0	NM_001302886	72843.0	Mm.25307	NM_181650	ENSMUSG00000035529	Prdm4	1700031E19Rik|2810470D21Rik|AW552272|SC-1|SC1	PR domain containing 4	protein-coding	8.5387754056643	8.49726472382399	8.49600749698213	8.76762832965607	8.60871683378329	8.73236611047125	8.72059520668409	8.3701607248522	0.0370940372552472	0.822383045715355	0.932143478460956
Merged-chr1-172632627-3	chr1	172632519	172632719	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026725, exon 1 of 2)	exon (NM_026725, exon 1 of 2)	355.0	NM_026725	68440.0	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	5.621643642645	5.7969858018144	6.00608016840821	5.54342685679098	5.82334928943564	5.93131633823547	6.14765379137375	5.93825526432009	0.357920146008658	0.172093824049331	0.465316858575778
Merged-chr11-59526876-4	chr11	59526773	59526973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14696.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	7.25977121035924	7.17411903139499	6.74995109737864	7.14831994222678	6.81222471762677	7.27371869671949	6.91360358185235	6.99528897828742	-0.135164455392532	0.529470001737542	0.785653226520437
Merged-chr3-79287311-4	chr3	79287201	79287401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-58075.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	8.5198909055399	8.23937831583333	8.17872121465151	8.53038761563413	8.29646379814053	8.03525983818342	8.52319260432725	8.08402243274501	-0.163472526365115	0.379171576977455	0.681731129295467
Merged-chr5-95935227-4	chr5	95935122	95935322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21717.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	7.72582883242103	7.84741421612618	7.84670048509175	7.63477086022645	7.65679079849878	7.55396889464767	7.28683943221144	7.13185913120409	-0.438080146409762	0.0244199386346898	0.146078394157373
Merged-chr10-8842518-2	chr10	8842418	8842618	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	ORR1F|LTR|ERVL-MaLR	43552.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.00816377162326	3.0588801199221	3.06737558116848	3.35077747751672	2.98285998964359	2.68906345607849	2.93725841739183	3.06578346861504	-0.880337924309478	0.164914721809914	0.455226284949501
Merged-chr7-67973640-4	chr7	67973541	67973741	+	872.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 1 of 20)	intron (NM_010513, intron 1 of 20)	21384.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	4.45284718556265	4.81417896225377	4.69706002503033	5.06413835653494	4.42599961590025	4.53839643902261	4.47720837493416	4.35834048302266	-0.761040960480779	0.0431934709652301	0.211507159454741
Merged-chr3-88140974-5	chr3	88140872	88141072	+	835.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1400.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	3.16603311790886	3.21250701979328	3.03942200603021	3.2972352174664	3.16179262566357	3.21414369375411	3.2693842880759	3.43599525520876	0.300794021446082	0.583095960236587	0.816904287158464
Merged-chr3-146216775-2	chr3	146216675	146216875	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4186.0	NM_022983	65086.0	Mm.155520	NM_022983	ENSMUSG00000036832	Lpar3	Edg7|lpA3	lysophosphatidic acid receptor 3	protein-coding	3.30671966706057	3.25056334705037	3.24445214224644	3.29053415141195	3.47186431108039	3.59544650056076	3.78960947316147	3.36521618220664	0.980244838891839	0.0551601726497439	0.245528480334946
Merged-chr15-9131180-4	chr15	9131061	9131261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	9293.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	7.38360767359555	7.68489883389467	7.8951124465636	7.74546157633335	8.03935172643414	7.78667447287746	7.89192637713265	7.85378499536147	0.270309494903242	0.138418438125153	0.413889099884774
Merged-chr19-60144548-4	chr19	60144503	60144703	+	843.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_026942)	promoter-TSS (NR_026942)	-72.0	NR_026942	107376.0	Mm.245813	NR_026942	ENSMUSG00000053117	E330013P04Rik	9930018I18Rik|AW492152	RIKEN cDNA E330013P04 gene	ncRNA	3.62358191400116	3.69800520432981	3.8928610693834	3.93765613115484	4.1873811872447	3.80035449688292	3.87644517083758	3.84116394898424	0.398764699993698	0.38726204388147	0.688139428549813
Merged-chr12-17881767-4	chr12	17881627	17881827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	190918.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	7.51571572757377	7.50433248157076	7.5260758008342	7.41416788143474	7.32554851081336	7.36286896685939	7.84034403482454	7.42703038523838	0.0217033383337522	0.910488739127352	0.96669834733672
Merged-chr2-158160099-4	chr2	158159972	158160172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13680.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	7.01894479333473	6.45695084714536	7.29463965672601	7.54329230906706	6.85389423425437	6.61767527035644	6.98465623971759	7.07510602330471	-0.350397680795974	0.191769541030383	0.491174881537907
Merged-chr12-80814042-4	chr12	80813948	80814148	+	992.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	23516.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	5.6534143650403	5.89675540883404	5.72958456414921	5.31051753642409	5.77874695655662	5.77700956118447	5.74789622360425	5.4556463553766	0.0833250721084	0.771235340198987	0.91036734532567
Merged-chr8-44938161-3	chr8	44938086	44938286	+	927.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12022.0	NM_001081286	14107.0	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	3.92132356200085	3.96829884182171	4.10368684617598	4.31408097853827	3.56723976980141	3.77001089319033	3.90524645610522	3.64949745570293	-1.08098646448548	0.0202868531673802	0.129238101158064
Merged-chr3-126693570-3	chr3	126693468	126693668	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 3 of 18)	intron (NM_001025438, intron 3 of 18)	96617.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	3.7017746154638	3.51714044390583	3.70230052941106	3.79061437916505	3.91715324713456	3.59722577598147	3.58326532012581	3.41975391838358	-0.0994802866056648	0.841616539484751	0.939882709487764
Merged-chr4-140964217-4	chr4	140964122	140964322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355515, intron 1 of 7)	intron (NM_001355515, intron 1 of 7)	2951.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	6.9427457336622	6.64218797036203	7.31045652546552	7.34034502551208	6.73083731667057	6.60391494594778	6.94676052609682	6.96458162284581	-0.386731560045217	0.10355316977415	0.353601025383405
Merged-chr17-50499580-4	chr17	50499466	50499666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9981.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	6.22979300476476	6.00553000082808	6.11168468749387	6.11319471809801	6.26966798688237	6.17971151011995	6.43846379369858	6.10732222909685	0.216533332365804	0.344862270111608	0.653272604871241
Merged-chr11-74946530-2	chr11	74946430	74946630	+	627.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 8 of 18)	intron (NM_001002764, intron 8 of 18)	20658.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	2.11571365560368	2.0586024482327	1.95561321841571	1.91507454606895	2.10812963062306	2.36660932560955	2.49548936920215	2.44831505825281	2.38912796622821	0.0033834749530618	0.035081189174652
Merged-chr5-135188147-4	chr5	135188067	135188267	+	904.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011714, intron 1 of 18)	CpG	844.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	4.03477455521899	4.12386464549983	4.22184439631195	4.32848713298335	4.40139758497885	3.74658498362026	4.24516779246381	4.08216352605302	-0.0923953590860288	0.83383156364554	0.936568728104746
Merged-chr8-14888749-4	chr8	14888627	14888827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_012000, exon 1 of 3)	5' UTR (NM_012000, exon 1 of 3)	191.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	8.12634213144178	8.38337042463958	8.64133906442168	8.18932787424226	7.96570734223682	8.37344289004063	8.06995688493208	8.17211124619569	-0.251865526713907	0.179593456836383	0.475824186021704
Merged-chr11-46457927-4	chr11	46457825	46458025	+	930.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134250, intron 2 of 6)	RMER6B|LTR|ERVK	2994.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	4.71377218609689	4.81436948692004	4.59481787329222	4.59226995900554	4.54033623765675	4.54719395163157	5.13271113554775	4.67280381909877	0.13930263225334	0.70255855487778	0.880288258302449
Merged-chr8-104247953-4	chr8	104247885	104248085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 1 of 8)	intron (NR_045642, intron 1 of 8)	573.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	4.63732956758619	4.57861500403089	5.16150919901674	4.59753524624728	4.73988835499452	4.49990829234857	4.53366268825688	4.89100773680455	-0.164219883442118	0.661466460492719	0.859389646833337
Merged-chr1-171841569-3	chr1	171841481	171841681	+	831.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 2 of 8)	L1_Mur3|LINE|L1	1884.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	3.30918801898223	3.2938905432477	3.42011507710781	3.250452888666	3.3893967088355	3.42202525302333	3.2392735187345	3.36425886950013	0.151768463333685	0.768061103052375	0.909266558474345
Merged-chr6-125572671-4	chr6	125572585	125572785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 6 of 51)	MTD|LTR|ERVL-MaLR	19737.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	7.64649399282109	7.30019370143105	8.02900747224767	7.7142888552484	7.67471146779619	7.68976518894846	7.99682884513875	7.78036119252285	0.123242457190109	0.549108447752671	0.797838553710581
Merged-chr19-40641049-4	chr19	40640967	40641167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-18703.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	7.23967162626474	7.09239895636259	7.3702953573696	7.28336402831352	6.89833763691185	7.15005438846643	6.78665643972629	6.81643884460755	-0.457697708050748	0.0194518203596166	0.125572385396077
Merged-chr6-136814926-4	chr6	136814860	136815060	+	822.035706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021714, intron 11 of 11)	B2_Mm1a|SINE|B2	6712.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	4.56765058601621	3.77676165308163	4.40305319916592	3.43641136590472	3.44803109518878	3.90110894119223	3.81571813069647	4.03324740472717	-0.826145253472543	0.141602075956965	0.4187583266667
Merged-chr15-59552654-4	chr15	59552572	59552772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-95982.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	7.2770846919792	7.22653780092475	6.8070203003517	7.10274946342992	6.84825806164627	7.14855485379853	6.81552663641952	7.01722235110621	-0.218075441969519	0.292091602595816	0.604488811454544
Merged-chr9-114688698-4	chr9	114688597	114688797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146229)	promoter-TSS (NM_146229)	-134.0	NM_146229	235661.0	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	7.60679120686657	7.96641225642031	7.55255921881278	7.4329758240162	8.10642286016948	8.38532369365052	8.00795652295471	7.78760213568342	0.566570568724293	0.00584887562463919	0.0532771419718386
Merged-chr13-119754850-3	chr13	119754775	119754975	+	727.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175538, intron 1 of 3)	intron (NM_175538, intron 1 of 3)	1007.0	NM_175538	245269.0	Mm.403943	NM_175538	ENSMUSG00000095930	Nim1k	E130304F04Rik|Nim1	NIM1 serine/threonine protein kinase	protein-coding	3.48364299171268	3.35480526181732	3.18598144769892	3.54756690411072	3.32884418834342	3.36382364420746	3.30169894002821	3.80832085758835	0.198273170988288	0.715894146981791	0.886371813543908
Merged-chr11-120041054-2	chr11	120040986	120041186	+	1000.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	695.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	4.06512201601687	4.24987584916576	3.86929085085925	4.43089618082813	3.53770375211351	3.93663376869663	3.68630909661681	4.01691977387998	-1.06121350040042	0.0263548916491568	0.153939833161937
Merged-chr4-145019447-3	chr4	145019310	145019510	+	980.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 66 of 69)	intron (NM_001276465, intron 66 of 69)	126273.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	5.03873298421322	4.3883143641626	4.98051645244435	5.59663207073188	3.73543957324642	4.29760108793781	4.03042488631587	4.36949521807822	-2.1727874068132	4.73438961763659e-06	0.000141176840634166
Merged-chr6-82039390-1	chr6	82039290	82039490	+	553.0	f0_balb.idr	Intergenic	Intergenic	-2238.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	2.71191511502005	2.56037025756471	2.65556471294861	2.79209177953255	2.45561864810956	2.26655717722632	2.3213573005344	2.32584217527598	-2.02387514714969	0.0113962779403988	0.0866177968520709
Merged-chr9-110667442-4	chr9	110667376	110667576	+	851.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	10973.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	3.75807055341724	3.60956634027368	3.4205142916146	3.43331619278606	3.44935910321311	3.87953596114191	3.79054903909953	3.94057801330384	0.663169791838724	0.179303537760472	0.475558645945455
Merged-chr16-18425410-2	chr16	18425310	18425510	+	924.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111062, intron 1 of 5)	MER67A|LTR|ERV1	-1007.0	NM_001353143	26462.0	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	2.31994974663589	2.55364292173631	2.32026203550983	1.94271299581065	2.03052660847872	2.0656742587607	2.11392672531807	2.11895420111326	-1.54934036457421	0.0807483071998395	0.308231016151519
Merged-chr15-89182532-5	chr15	89182434	89182634	+	801.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027081, exon 20 of 20)	3' UTR (NM_027081, exon 20 of 20)	-1746.0	NM_138749	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	3.12934530434859	2.91647793825585	3.12975006481235	3.17023679090428	2.97131362700304	3.18006272979091	3.05937824942951	3.23924252606794	0.0731986410601096	0.897954595130133	0.961931072718305
Merged-chr5-88981816-4	chr5	88981718	88981918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359211, intron 3 of 26)	intron (NM_001359211, intron 3 of 26)	-46148.0	NM_001359212	54403.0	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	7.04796263178025	7.59244944059268	7.96766675511211	7.79389667578672	7.0549532988951	7.21452673667233	7.4880400741429	7.44587829507564	-0.450632397703323	0.0570102683486333	0.250213247534362
Merged-chr11-44544241-4	chr11	44544165	44544365	+	838.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 4 of 5)	RSINE1|SINE|B4	24888.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	3.94881026301854	3.79572968818164	3.68027977179629	3.96349854652802	4.01219012246839	4.0211213696516	3.97982779488145	4.12767637094517	0.475212540757305	0.270665375226657	0.58243909949623
Merged-chr7-101848090-4	chr7	101847984	101848184	+	969.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303239, intron 2 of 5)	ORR1B1|LTR|ERVL-MaLR	-2753.0	NM_008035	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	4.75677593825056	5.09580721882806	4.87647189947367	4.75743910411444	4.96875919104982	4.97576028991987	5.18218281549045	5.41818292693895	0.526837437878762	0.107510237061724	0.361596709531563
Merged-chr5-90020300-4	chr5	90020184	90020384	+	968.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136950.0	NM_001081401	330119.0	Mm.133062	NM_177872	ENSMUSG00000043635	Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding	4.88902123828753	4.6743546534366	5.25205452666801	4.74963280166252	5.85355380348823	5.39737026083902	5.71406399571988	5.69622324913323	1.42314456030246	3.84735671053218e-06	0.000117583084284659
Merged-chr2-15054643-2	chr2	15054543	15054743	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029466)	promoter-TSS (NM_029466)	229.0	NM_001165941	74455.0	Mm.478923	NM_028950	ENSMUSG00000026707	Nsun6	4933403D21Rik|4933414E04Rik|NOPD1	NOL1/NOP2/Sun domain family member 6	protein-coding	3.63321781624645	3.95319158875248	3.6336746992072	3.79804931116436	4.12551205442358	3.9247219754153	3.62045271319432	4.31790415956503	0.717000405997776	0.132965735397002	0.406105758986762
Merged-chr2-59393366-4	chr2	59393261	59393461	+	960.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-6679.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	4.70768753100468	5.02747557436696	5.18259818439193	5.13491232171846	5.38334784884542	4.93083444132221	4.88863266690809	5.32260514594801	0.24194524981853	0.47111932416907	0.749710531758597
Merged-chr8-70608403-4	chr8	70608316	70608516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133772)	promoter-TSS (NM_133772)	-102.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	5.66174965083365	5.39622730110714	5.20984005966946	5.36486433520786	5.66220682541111	6.1284474133991	5.73113022915182	5.86885050736885	0.734713108478572	0.00842757576383168	0.0696461273947761
Merged-chr9-40723021-1	chr9	40722921	40723121	+	732.0	f0_balb.idr	intron (NM_133733, intron 1 of 6)	MLT1B|LTR|ERVL-MaLR	37057.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	3.29048937275652	2.91802428073432	3.24205896937528	3.20431977660145	2.628532169742	2.71721791411684	2.6824087703243	3.02285587084456	-1.88593218366557	0.0061597637896227	0.0552895115739665
Merged-chr6-84027821-4	chr6	84027731	84027931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310152, intron 1 of 53)	intron (NM_001310152, intron 1 of 53)	8445.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	4.75437620703734	4.13549347679744	4.78898091658668	4.78761402692041	4.56960985052255	4.43814827813661	3.9032159203621	4.751927609919	-0.422858975105155	0.344091764210046	0.652610656810439
Merged-chr8-79450369-3	chr8	79450266	79450466	+	845.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50898.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	3.73934754236401	3.60415224369493	4.38111599772026	4.0957344366524	3.67146295515832	3.68043885532835	3.87999787545709	3.84421831362225	-0.627862691063619	0.204797449223306	0.508291001717831
Merged-chr9-7227491-4	chr9	7227391	7227591	+	834.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	42986.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	4.19152820449083	4.01131548102791	3.96603395333497	3.47919547074118	4.18279022434001	4.1394681868804	4.13088111596705	3.62827851974485	0.302100073498363	0.540630553117036	0.792829019929487
Merged-chr7-30244672-3	chr7	30244577	30244777	+	741.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152437, intron 22 of 32)	intron (NR_152437, intron 22 of 32)	-7912.0	NM_001289817	381867.0	Mm.483986	NM_001289817	ENSMUSG00000100512	Ovol3	Gm1903|movo3	ovo like zinc finger 3	protein-coding	3.10468492016497	2.78859385709314	2.9474682542086	2.90124586398105	2.6353507246854	2.66218443757108	2.6243396310818	2.69992212194839	-1.40628886911941	0.0346822928899639	0.184365267036202
Merged-chr8-40598550-4	chr8	40598472	40598672	+	871.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040699, intron 3 of 13)	intron (NM_001040699, intron 3 of 13)	36220.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	4.19766170199918	4.0826333978527	4.58190971690325	3.98532116470386	4.832526050366	5.01777708195283	5.03676202530054	5.11499717842186	1.72581134478767	3.15381835608863e-06	9.86750051727617e-05
Merged-chr7-141491105-4	chr7	141491002	141491202	+	979.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252588, intron 4 of 7)	intron (NM_001252588, intron 4 of 7)	14722.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	6.05763671013817	5.59867881032993	5.73863586757634	5.76629717038967	5.53469850329487	5.38432839458659	5.88917907295703	5.55190602421915	-0.321408436191886	0.249240370782323	0.560328612484111
Merged-chr14-32513516-4	chr14	32513425	32513625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081221)	promoter-TSS (NM_001081221)	4.0	NM_001081221	319955.0	Mm.318310	NM_001081221	ENSMUSG00000054051	Ercc6	4732403I04|C130058G22Rik|CSB	excision repair cross-complementing rodent repair deficiency, complementation group 6	protein-coding	6.55118997821662	6.49400548217004	6.42256899588939	6.16696747267768	6.20496223546373	6.41537712137508	6.3725830383306	6.31107084450948	-0.118693145789466	0.603884546792194	0.828350269166784
Merged-chr8-92855853-4	chr8	92855745	92855945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357375, intron 1 of 12)	intron (NM_001357375, intron 1 of 12)	512.0	NM_001357374	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	4.83385575878902	4.84448212421321	4.87194141234753	4.82344627384764	4.76891941465809	4.97146014766029	5.05028774273013	5.2190633841711	0.323320095018514	0.317428420792805	0.629348418250497
Merged-chr4-95156956-3	chr4	95156855	95157055	+	890.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104733.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	3.74915006399736	3.98673538408366	3.90413454759848	4.13454190396765	3.68208048501926	3.75287566112771	3.98004430906535	3.80110122079323	-0.454792929356136	0.318459122432347	0.63033847433642
Merged-chr2-4570536-4	chr2	4570430	4570630	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 2 of 11)	intron (NM_001177844, intron 2 of 11)	10776.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	4.02275735463895	3.68942059006251	3.55343339409276	4.33007345351202	3.88169745731468	3.90324231798306	3.76829564660293	3.61296456945983	-0.431301349602616	0.399069187051876	0.697149237088366
Merged-chr14-75188673-2	chr14	75188573	75188773	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	52248.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	2.90071549316165	3.17975092799024	3.21144387429923	2.43764672192088	3.19500465221175	3.21002645300145	3.14206522292998	3.15311134122568	0.791570775120988	0.256752827439267	0.568480006866985
Merged-chr7-102224672-2	chr7	102224572	102224772	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_111938, intron 2 of 4)	intron (NR_111938, intron 2 of 4)	1644.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	3.01117067156148	2.857697958682	2.95265571286772	3.01453193765937	3.18812934175406	2.86231659653452	2.81765152861909	2.88959602542421	-0.0203466278784528	0.973451195638545	0.990485651958264
Merged-chr1-189807127-2	chr1	189807040	189807240	+	611.700012	f0_c57.idr|f1_c57bl6.idr	intron (NM_008976, intron 3 of 18)	intron (NM_008976, intron 3 of 18)	78872.0	NM_008976	19250.0	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	2.57036503377197	2.51145213122494	2.73547744491214	2.20853475246463	3.32986987641974	3.26211979685163	3.52379979207467	3.45094098060976	5.73947267588831	1.20854188810897e-10	9.13193238362088e-09
Merged-chr15-73724700-4	chr15	73724602	73724802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166388)	promoter-TSS (NM_001166388)	-95.0	NM_001357591	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	6.69956891548376	6.78820945716932	6.48699170042183	6.71426750439356	6.86625899179062	6.83156702209368	7.27430630549921	6.55201149078319	0.32115572951091	0.161851146789001	0.450843453891688
Merged-chr12-84130155-4	chr12	84130057	84130257	+	978.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028821, intron 4 of 7)	ORR1G|LTR|ERVL-MaLR	15829.0	NM_001346528	105000.0	Mm.101525	NM_028821	ENSMUSG00000042523	Dnal1	1700010H15Rik|AW121714|Dnalc1|E330027P08Rik	dynein, axonemal, light chain 1	protein-coding	4.79278718800592	4.79607216706906	5.32749028449593	5.43912235091607	4.79613805525332	5.16056621136099	5.15771395572972	5.11729783643203	-0.15036454681815	0.671595460330299	0.864873059373178
Merged-chr7-16005165-3	chr7	16005060	16005260	+	947.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5665.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	3.61598807792154	4.11139320553011	3.61645699644611	3.87970577411999	3.58139384563071	3.61221311013135	4.07380163219463	3.61456045407619	-0.269561076848732	0.591283671727743	0.821525680896513
Merged-chr3-87935916-2	chr3	87935816	87936016	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177663, intron 2 of 3)	MTEa-int|LTR|ERVL-MaLR	5602.0	NM_177663	229504.0	Mm.45744	NM_177663	ENSMUSG00000048039	Isg20l2	4930429N24|C80587	interferon stimulated exonuclease gene 20-like 2	protein-coding	2.55771727499707	2.55342695831245	2.62862838689733	2.64437511058877	2.60531329958283	2.98878583070255	2.74951964795549	2.93254566822781	1.06419287610497	0.103348032539347	0.353243535377182
Merged-chr17-86658039-3	chr17	86657942	86658142	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011104)	TTS (NM_011104)	-95822.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	4.84972492658745	4.67428271141702	4.9091191774479	4.49653427057908	3.59762856078	4.22420604296132	3.90730857606343	4.03718473289143	-1.99532228997582	9.70599900040345e-06	0.000267776473972759
Merged-chr2-128711017-4	chr2	128710910	128711110	+	877.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	12095.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	5.21660140374859	4.77968127575889	5.77906731312819	6.43486475906423	4.99801253200205	4.76128552569529	4.73978223890903	4.92852858992136	-1.53681254038005	0.000401610301913612	0.00646162289328865
Merged-chr14-61687896-4	chr14	61687795	61687995	+	942.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5522.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	4.75086080615337	4.47410889994141	4.71416797180329	4.50705498846079	4.88943425114985	4.59460153914767	4.96196457615166	4.71106258398828	0.419063867876004	0.226566071336246	0.53520075526854
Merged-chr10-80826440-4	chr10	80826348	80826548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027656)	promoter-TSS (NR_027656)	-208.0	NM_001301034	18245.0	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	8.90270072650465	9.27774207820779	9.20297683711317	8.92527202590604	9.20259957401523	9.30558486423989	9.05446362869988	9.14113313654236	0.115222272909085	0.471814416907292	0.750133229536227
Merged-chr4-117915144-4	chr4	117915043	117915243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146152)	promoter-TSS (NM_146152)	-144.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	7.07777500408705	6.99979310311936	7.32057601966555	6.71203322356945	6.61630499992387	7.02781188387536	6.66927967148816	7.07401931446758	-0.247778723356097	0.288749227308759	0.600742135877454
Merged-chr2-152686982-4	chr2	152686889	152687089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025543)	promoter-TSS (NM_025543)	-159.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	7.23740223266434	7.62322377457624	7.23865451433453	6.75501199720101	7.39790520015783	7.71713737236698	7.15774925293807	7.31864665270264	0.229013211144524	0.343950951324416	0.652532024712027
Merged-chr14-31380464-4	chr14	31380351	31380551	+	993.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	37226.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	5.01704929229131	4.72700418468169	5.12059560887039	5.34625795233635	5.31253673872648	4.73828463208331	5.35937110977471	5.48487182675615	0.317968721683852	0.366745065318914	0.671154313005142
Merged-chr5-102010539-4	chr5	102010437	102010637	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	MER3|DNA|hAT-Charlie	59384.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	4.84708172862031	4.60078271669847	4.39377690916749	5.03279350167039	4.94230470247254	4.62070825721623	4.7896747056075	4.73596062805705	0.0493813326129259	0.893991668350375	0.960481560907683
Merged-chr1-152548172-4	chr1	152548076	152548276	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 8 of 17)	MTEb|LTR|ERVL-MaLR	77041.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.51411574299141	4.7659668492015	4.78002746821785	4.87898592408296	3.99261665650714	4.30958718219905	4.53512847832801	4.70658387784948	-0.769158926279568	0.0548711356254862	0.244724473502263
Merged-chr3-5575928-1	chr3	5575828	5576028	+	1000.0	f0_balb.idr	intron (NM_008994, intron 1 of 5)	CpG	320.0	NM_001163301	19302.0	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	7.67267151518851	7.65936956448139	7.79572843854526	7.90292835618307	7.83711341382964	8.0693781752483	7.89675259451311	7.84353330916284	0.186618701197664	0.27124993832857	0.583005426328374
Merged-chr4-93520945-4	chr4	93520833	93521033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-185422.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	4.76886798448156	4.19795429269122	4.98079624455451	5.18081646272194	4.82298467472171	4.90624893141717	5.1898497211813	4.36744132629401	0.0274128556375066	0.949027985793172	0.981680324135998
Merged-chr5-90247831-3	chr5	90247739	90247939	+	788.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198010, intron 27 of 32)	ORR1A2-int|LTR|ERVL-MaLR	-23843.0	NM_001163456	231430.0	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	3.65956972716165	3.47658301798806	3.81037486703062	3.44752425965313	3.76918844883474	3.66604066955853	3.74617846897085	3.75997583388323	0.446142566616131	0.344702375880634	0.653182920489211
Merged-chr15-38553637-4	chr15	38553550	38553750	+	982.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045757, intron 2 of 2)	ORR1A4|LTR|ERVL-MaLR	-34384.0	NM_018745	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	4.59762817250634	4.79043217265819	4.82745831663317	4.57625125876098	4.64658395694588	4.3421115572556	5.05412336450205	4.82419895771571	0.0981326624988792	0.789545309312	0.918515153062961
Merged-chr1-170165101-4	chr1	170165011	170165211	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 2 of 10)	MTEa|LTR|ERVL-MaLR	9853.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	5.35335998607087	5.15529081116287	5.27018514054251	5.30538603158799	4.91830167352071	5.00141884527113	5.09115154851602	4.93748407314659	-0.549785563430739	0.067221800298146	0.276624878500418
Merged-chr4-128785133-4	chr4	128785022	128785222	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 6 of 8)	intron (NM_001081098, intron 6 of 8)	20990.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	5.25366765267798	5.20612635895895	5.00988508296401	5.58162510621436	5.67319002875541	5.42975203195848	5.56004023445822	5.08120743169259	0.286600354304117	0.374504586651549	0.677830694759353
Merged-chr15-84325959-4	chr15	84325796	84325996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162500)	promoter-TSS (NM_001162500)	-223.0	NM_001162500	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	6.07360676073007	5.93112788719817	6.4107197009138	5.7651740663979	5.88767103505326	5.98097489848183	5.67050209747528	6.07033002103475	-0.225911476395232	0.407939991604548	0.704075086986739
Merged-chr13-34652645-4	chr13	34652543	34652743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105041)	promoter-TSS (NR_105041)	38.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	6.95475322801768	6.86154717366719	6.95597264434503	6.96336680716056	5.97814161694986	6.61730713362064	6.62266998702495	6.52270013812276	-0.701955716275865	0.00256220246644303	0.0282576711123255
Merged-chr6-28623188-4	chr6	28623103	28623303	+	816.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 10 of 23)	intron (NM_019776, intron 10 of 23)	142855.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	3.84948305888686	3.95850784612179	3.79659387610347	3.99070567643078	3.96596818056584	3.9160502546815	4.02624696343866	4.04151994946919	0.213523136927882	0.615893335346067	0.83467255086626
Merged-chr6-54116447-4	chr6	54116340	54116540	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	L3|LINE|CR1	76508.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	5.57460650085729	5.51058453308074	5.68767164157697	5.64176557545949	4.64774898499065	4.88457343220412	4.92715900744682	4.38738012156104	-1.69170741472507	2.080293528091e-07	8.36023516281033e-06
Merged-chr1-173879433-3	chr1	173879328	173879528	+	947.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170853, intron 2 of 9)	intron (NM_001170853, intron 2 of 9)	759.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	4.73205755207587	5.12340482363483	4.6978650298988	4.47401774100512	4.06899733388389	4.30998117240011	4.1097159112385	4.2795744906954	-1.36048885240728	0.000886919326208219	0.0122416192980754
Merged-chr19-53554621-3	chr19	53554503	53554703	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25285.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	4.60066751448501	4.29171178231372	4.60148337907585	4.63385366282723	3.58070552216619	3.82245402101974	3.55054417568451	3.56079079508182	-2.6466342482309	6.80144228005188e-08	3.02385921331551e-06
Merged-chr15-83452119-1	chr15	83452019	83452219	+	723.333313	f0_balb.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	-4239.0	NM_001358644	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	3.58149242824001	3.53224659307172	3.63169844363102	3.55775998780824	3.46302825934673	3.41200643371636	3.28895254190726	3.41838850872689	-0.593803916519522	0.235425194417315	0.545420732133053
Merged-chr10-120812259-3	chr10	120812186	120812386	+	781.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 5 of 6)	intron (NM_177092, intron 5 of 6)	-45343.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	3.26534850772672	3.71534126971161	3.20552709073641	3.33941547780029	3.01838612698386	3.49403412083294	3.25344503439624	2.93230289895645	-0.767302585050688	0.204157568013346	0.50737576212243
Merged-chr13-110538450-5	chr13	110538425	110538625	+	905.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143481.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	3.63114378772316	3.39688723010158	3.58122031404183	3.23054738866124	3.36840856979002	3.40846297678241	3.66394718370292	3.57912067725961	0.171519172391174	0.740447414666637	0.897904603788209
Merged-chr8-109536945-2	chr8	109536845	109537045	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019938, intron 16 of 20)	intron (NM_019938, intron 16 of 20)	28916.0	NR_151644	64340.0	Mm.23705	NM_178380	ENSMUSG00000037993	Dhx38	5730550P09Rik|AI325984|AW540902|Ddx38|KIAA0224|Prp16	DEAH (Asp-Glu-Ala-His) box polypeptide 38	protein-coding	3.42485100584835	3.37180218031815	2.9473872223898	2.89489339244621	3.14372385030177	3.32159743436838	3.35995445255893	3.14584276691571	0.25872548809248	0.662557261114385	0.860115279097678
Merged-chr9-61707905-3	chr9	61707808	61708008	+	915.0476070000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	206602.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	3.24276483843707	3.39215835415708	3.57653931572494	3.51470357466104	3.25640076292725	3.41760237715121	3.35162964554112	3.52461627484679	-0.192088343194351	0.711870133772918	0.884679048655813
Merged-chr1-173767040-4	chr1	173766943	173767143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008329)	promoter-TSS (NM_008329)	-124.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	8.54906411307079	8.51286718239971	8.59096073029988	8.56279654643117	8.14481565306113	8.03652454758297	8.15968478632275	7.90024615525892	-0.61835108600917	5.76128626106338e-05	0.00127791397561929
Merged-chr10-19551797-4	chr10	19551689	19551889	+	824.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40160.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	4.82409943926115	4.61001105431253	4.60367273433227	4.83388859630111	4.69030151776227	4.60751678832244	4.5001956838243	4.47401543361111	-0.332359748353768	0.344453466653708	0.652914285727938
Merged-chr18-34854648-2	chr18	34854548	34854748	+	874.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6559.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	2.78699586415386	2.84753704724789	3.41133751904157	2.58327317660108	3.14060617402896	3.18793938585371	3.23863635772831	3.63594913255413	1.42751574937273	0.0341430640691069	0.182411555758835
Merged-chr2-84562368-3	chr2	84562272	84562472	+	883.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-55499.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	4.05330033752955	3.71441121539615	4.43241504533226	4.10367004771882	3.68603171336707	3.56305425097688	3.68563843274587	3.86121357402919	-1.12857687970918	0.0203711277448504	0.129606727580664
Merged-chr15-33263906-3	chr15	33263805	33264005	+	933.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176073, intron 3 of 7)	intron (NM_176073, intron 3 of 7)	142034.0	NR_033608	73486.0	Mm.483393	NM_028551	ENSMUSG00000058101	1700084J12Rik	-	ribosomal protein L7-like 1 pseudogene	pseudo	3.51956476928996	3.44845981963421	3.73349336300203	4.02246487176535	3.39673468281269	3.44800621771222	3.97936337952789	3.45898772010929	-0.365779255983739	0.503593490882302	0.7705017214976
Merged-chr15-97663857-4	chr15	97663750	97663950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	41972.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	5.51673661973205	5.41873497548098	4.85128624730933	5.38828403079541	5.50813656155009	5.58264101150629	5.32482387884089	5.28713596685116	0.192768642616279	0.530846836887799	0.786869282179433
Merged-chr1-84437757-4	chr1	84437669	84437869	+	802.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 8 of 12)	intron (NM_152915, intron 8 of 12)	-153124.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	4.56553607970277	4.29771527775272	4.44295701454456	4.58549146285842	4.6914726749975	4.4348227478871	4.37963634361604	4.67549817129448	0.168454382505885	0.648284523679402	0.852111879396461
Merged-chr6-145304244-1	chr6	145304144	145304344	+	805.0	f0_c57.idr	Intergenic	RSINE1|SINE|B4	53692.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	3.47879758600995	3.18784636239369	3.53949942152467	3.42227802160068	3.83739215065423	3.87794569293411	3.92355656442064	3.98183201914091	1.51199282343565	0.00159784586753451	0.0196396254541943
Merged-chr9-120881318-3	chr9	120881200	120881400	+	979.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	33950.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	4.34896931008687	4.29622987551075	4.34974463304128	4.61040401093587	3.16294785687485	3.27139245091195	3.22280985053313	3.38463816234394	-4.5388005342367	1.25599338030399e-09	7.94669802814734e-08
Merged-chr13-74009375-4	chr13	74009278	74009478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182839)	promoter-TSS (NM_182839)	-41.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	7.83273438128187	7.6049854815906	7.43647163628869	8.16502529823919	7.48678834986914	7.7119534649342	7.92236133582686	7.77583291307599	-0.0927002084383512	0.669662926064037	0.86357079102718
Merged-chr8-46811493-4	chr8	46811384	46811584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 5 of 7)	intron (NR_152560, intron 5 of 7)	71739.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	7.47587030949778	7.52136198210584	7.11730614602314	7.59941167095382	7.29744351919242	7.45532229990214	7.11769173972552	7.38636257390855	-0.17706672676453	0.368549726924076	0.672992613762041
Merged-chr16-38536908-4	chr16	38536792	38536992	+	885.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153380, intron 6 of 10)	intron (NR_153380, intron 6 of 10)	13364.0	NR_153380	224143.0	Mm.284366	NM_172380	ENSMUSG00000034064	Poglut1	9630046K23Rik|Clp46|Ktelc1|Rumi|wsnp	protein O-glucosyltransferase 1	protein-coding	4.20773907414389	3.86095293144007	3.60063822482428	3.87698862655918	4.46575180465731	4.54319608220213	4.18923362111153	4.24922042096938	1.18881830099814	0.00602320050972232	0.0543998717271317
Merged-chr19-42639730-4	chr19	42639609	42639809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26903.0	NM_053083	67573.0	Mm.178767	NM_053083	ENSMUSG00000025185	Loxl4	4833426I20Rik|Loxc	lysyl oxidase-like 4	protein-coding	6.35202192670159	6.05154631764464	5.9923926305399	6.13207112476645	6.03193062391537	5.81903283281803	5.84746748104846	6.05240273330012	-0.297263205652039	0.221413581982506	0.529463056908312
Merged-chr5-105064606-2	chr5	105064506	105064706	+	922.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-11045.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	2.63001798408095	2.43118735199216	2.6303262729185	2.46505806612636	2.7503937475116	2.736086532221	2.68375697164604	2.69225173909265	0.926746690336076	0.153287199945854	0.437855502002078
Merged-chr4-141713814-4	chr4	141713710	141713910	+	889.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017966, intron 1 of 9)	RLTR30D2_MM|LTR|ERV1	9609.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	4.87283633072926	5.04061393249033	5.05892625268077	4.86156630433138	4.64553342293336	4.13468932472735	4.42222974998457	4.29179193763299	-1.20305473840526	0.00157724878953759	0.0194603902912976
Merged-chr8-10849712-4	chr8	10849661	10849861	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32693.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	5.17704735184825	5.50871209778965	5.9241720776601	5.83914777159245	5.12297318892765	5.01573121448589	4.62198830912455	5.42002251266107	-1.02507499258949	0.00367249845295587	0.0374344504343328
Merged-chr14-103777582-3	chr14	103777481	103777681	+	986.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66120.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	4.62375656009988	4.41717471125119	4.43446615450722	4.91800081421706	3.88518685834381	4.06718785976781	4.37261486749383	4.10737086323175	-1.25010160963267	0.00305814455284019	0.0324889061383003
Merged-chr3-108890938-4	chr3	108890847	108891047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177091)	promoter-TSS (NM_177091)	-939.0	NM_001165965	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	5.91641749690861	5.61586730357476	5.6133797588023	5.72774991327316	5.77175786893719	6.15793893067968	6.09326529798517	6.29792083471969	0.577160942359201	0.0273702059172901	0.15770937318763
Merged-chr8-25715437-3	chr8	25715331	25715531	+	815.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081269, exon 23 of 23)	3' UTR (NM_001081269, exon 23 of 23)	-4617.0	NR_121642	71910.0	Mm.385055	NM_028000	ENSMUSG00000031570	Plpp5	1810019D05Rik|2310022A04Rik|AW045471|Ppapdc1|Ppapdc1b	phospholipid phosphatase 5	protein-coding	3.1774523171368	3.17997458092156	2.95381821952261	3.14655001467888	2.78949012675285	2.99904155598008	2.67656458815542	2.68208345482154	-1.50616237963282	0.0210421124410231	0.132453878881365
Merged-chr3-89393040-4	chr3	89392922	89393122	+	856.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355211)	promoter-TSS (NM_001355211)	356.0	NM_009565	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	3.35372380627551	3.44031296064008	3.52544873490863	3.15497192397398	3.7615519589982	3.40545260181039	3.66040355286766	3.52345120089271	0.796680255274265	0.119855631455541	0.383231758348752
Merged-chr11-116615350-1	chr11	116615250	116615450	+	704.75	f0_balb.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	8902.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	3.92673814329271	3.85149841785974	3.72359645145433	3.62893911609151	3.92504671728398	4.04929108681067	3.76240949812176	3.82726338642138	0.341041851880826	0.446101552463958	0.731873470770112
Merged-chr8-56294576-4	chr8	56294474	56294674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008278)	promoter-TSS (NM_008278)	22.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	6.82082771364081	6.16394558234397	6.79629048293971	6.69845760699454	6.40524731416519	6.06210504082884	6.47126319890848	6.26609583663044	-0.482109985276024	0.0537749264647874	0.242052726612157
Merged-chr3-95497843-3	chr3	95497738	95497938	+	692.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009709)	TTS (NM_009709)	-1372.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	3.43871720461911	3.44406162384729	3.54099552704631	3.34267435298951	3.34944816296926	3.3187532924731	3.31619740653863	3.14124755874257	-0.542864548747068	0.30236059369319	0.614765902036323
Merged-chr8-25256132-4	chr8	25256008	25256208	+	856.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50162.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	4.59375622424174	4.32266707390265	3.81532420663684	4.0805902893398	4.16616864278507	4.17008838027591	4.30815820594405	4.52095875269064	0.167669242749793	0.701388937936815	0.87967443506783
Merged-chr7-28726786-4	chr7	28726683	28726883	+	936.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310687, intron 2 of 6)	LTR41|LTR|ERVL	9993.0	NM_015796	50760.0	Mm.358659	NM_015796	ENSMUSG00000030598	Fbxo17	Fbg4|Fbx17|Fbxo26	F-box protein 17	protein-coding	4.75302381018458	4.91589084746998	4.44442958673519	4.58897221029524	5.3033657906055	5.07560692323403	5.18540649880738	4.49049562063566	0.742544407286087	0.0457237719399095	0.219251708630478
Merged-chr15-50819617-2	chr15	50819517	50819717	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	69432.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	3.9869472014479	3.65496471746697	3.3363622734161	3.56672163456021	3.85676232626092	3.92529881838421	3.73870328813815	3.7521521591916	0.502373258347475	0.302755882277104	0.615235702303994
Merged-chr14-61690342-3	chr14	61690244	61690444	+	797.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7971.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	3.76210993754575	4.26472176759613	3.81114071942345	2.84578584637574	3.5274758104391	3.54811255546051	3.59039486543309	3.36094124383677	-0.80683938520488	0.208714676299132	0.513022375312381
Merged-chr10-96875903-4	chr10	96875804	96876004	+	943.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-159864.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	5.56455947250406	5.30108450920157	5.58857906749925	5.32511508655095	4.69484237865344	4.83491581928081	5.06511547757569	4.78230272086686	-1.14198239638367	0.000339422917868827	0.00561594232240475
Merged-chr11-23211232-3	chr11	23211135	23211335	+	888.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44806.0	NM_001035226	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	4.30249316009085	4.34489929679307	4.22089538290405	3.72619737068298	4.22657803376295	3.69383742254843	3.97167661429432	4.1302990945593	-0.351092384864839	0.460572872530313	0.742687499720882
Merged-chr10-88350036-4	chr10	88349945	88350145	+	946.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 1 of 6)	intron (NM_027878, intron 1 of 6)	7030.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	5.02703351603278	4.74030083600015	4.99541527152305	5.18406530833128	4.81234354959639	4.65650968695894	5.0346412613133	4.6975324115598	-0.394795328415613	0.245462483685041	0.55654355006563
Merged-chr13-13524298-4	chr13	13524171	13524371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66138.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	5.49755544565187	5.45930802826355	5.37930386135478	4.82755381941349	6.24230241448209	5.52662342711765	5.65449681737316	5.88335395928838	0.960973586512829	0.0030375494674428	0.0322893867298553
Merged-chr5-63827934-2	chr5	63827841	63828041	+	993.5833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	15446.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	2.9560384964968	2.9019800533432	2.89518308162617	2.5200101870861	2.76860202437508	3.06779240572949	2.94496332866043	2.95483099807022	0.510215197064814	0.426899206223804	0.718216318411019
Merged-chr10-123061016-4	chr10	123060913	123061113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163024, intron 1 of 34)	RMER19B|LTR|ERVK	15492.0	NM_001163024	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	7.47100476344953	6.98131484684637	7.90602470312945	7.91206484573596	6.41406345424234	6.41160957103695	6.8545631251143	6.65598038551168	-1.41523953211159	5.4598876318471e-08	2.47795341623144e-06
Merged-chr17-15774888-3	chr17	15774762	15774962	+	794.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	51724.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	3.32815106438848	3.2189323457114	3.32855942259021	3.02416704701194	3.90251678012106	3.94699112126029	3.49998054031842	4.06753518049542	2.16851772215441	2.40490159663747e-05	0.000598526191423282
Merged-chr17-25833010-4	chr17	25832900	25833100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019719, exon 1 of 7)	5' UTR (NM_019719, exon 1 of 7)	361.0	NM_019719	56424.0	Mm.277599	NM_019719	ENSMUSG00000039615	Stub1	0610033N24Rik|2210017D18Rik|2310040B03Rik|AW046544|Chip	STIP1 homology and U-Box containing protein 1	protein-coding	8.12093655941355	8.343769134771	7.98125443013648	8.06158940898367	8.30496111742673	8.68574352654433	8.41799116532762	8.25597557716095	0.371040397338329	0.0363897315422255	0.189729321816882
Merged-chr2-118562591-4	chr2	118562483	118562683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12897.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	6.3351363700098	6.5659649082994	6.18029169735927	6.53474020608461	6.14013403824801	6.22756873280123	6.42544133990348	6.58025757314369	-0.111684600307227	0.637810972406809	0.846975750544658
Merged-chr5-145117049-4	chr5	145116957	145117157	+	947.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	intron (NM_023142, intron 1 of 9)	2801.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	4.34958892365701	4.6656827822704	4.1023875559948	4.09994451564987	4.74904103449068	4.22938237782747	4.71379686670287	4.51645648012847	0.581737002621189	0.155782886303061	0.441613368280918
Merged-chr17-47328976-4	chr17	47328863	47329063	+	890.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 13 of 19)	intron (NM_001097623, intron 13 of 19)	-39924.0	NM_001146212	64657.0	Mm.216250	NM_183086	ENSMUSG00000034729	Mrps10	1110038B19Rik|AW743084|Rpms10	mitochondrial ribosomal protein S10	protein-coding	4.22509347740691	4.60768685433853	4.18095554731165	3.76827085421573	4.42659466964903	3.87617780872673	4.20662206244924	3.92821063120726	-0.222274461803892	0.643864455234898	0.849978747462225
Merged-chr13-74350216-4	chr13	74350118	74350318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023281)	promoter-TSS (NM_023281)	22.0	NM_023281	66945.0	Mm.158231	NM_023281	ENSMUSG00000021577	Sdha	1500032O14Rik|2310034D06Rik|4921513A11|C81073|FP|SDH2|SDHF	succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	protein-coding	7.66238761889042	7.86153298708232	7.90720295319405	7.74610757427255	7.66595062153458	7.57040540766058	7.66741232899504	7.43866594030582	-0.267642323354016	0.118299784867739	0.380450324253661
Merged-chr5-31241401-4	chr5	31241285	31241485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147201, intron 1 of 17)	GC_rich|Low_complexity|Low_complexity	467.0	NM_147201	192292.0	Mm.292040	NM_147201	ENSMUSG00000029148	Nrbp1	B230344L17Rik|Nrbp	nuclear receptor binding protein 1	protein-coding	7.02172072867054	7.08836208408487	6.76312738308366	7.05157705641994	7.10512064608297	6.81376272711528	7.26255398272203	7.15803507548898	0.144558405358841	0.474966560099252	0.75199957250939
Merged-chr2-75991048-4	chr2	75990939	75991139	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081033)	TTS (NM_001081033)	-9072.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	4.90764193241134	4.997317001206	4.799985352655	4.7665132359481	4.81365423132971	4.85686089191942	4.91874712370754	4.79683448180446	-0.0379419993969304	0.906553589616957	0.965374636270914
Merged-chr10-41595773-4	chr10	41595645	41595845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 30 of 47)	intron (NM_001358562, intron 30 of 47)	27729.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	7.15006333561715	6.91379866797048	7.03151531737882	7.19982432197209	7.07740563083807	7.26969835270818	7.24502850131223	7.31680204702108	0.190812226953534	0.315461005895536	0.627264824947297
Merged-chr16-44026459-4	chr16	44026359	44026559	+	985.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359085, intron 5 of 16)	L1M4|LINE|L1	1486.0	NM_001172107	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	5.06212685543943	5.11923011204373	4.91702635006698	5.44039367314747	5.49114148202472	4.93315287506907	5.13717380036895	5.15892855420801	0.0737483700214559	0.825519002159863	0.933108872014231
Merged-chr9-22054932-4	chr9	22054851	22055051	+	982.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310759)	TTS (NM_001310759)	-2928.0	NM_010487	15571.0	Mm.390167	NM_010487	ENSMUSG00000003410	Elavl3	2600009P04Rik|Huc|PLE21|mHuC	ELAV like RNA binding protein 3	protein-coding	5.32697282439115	5.71188669260119	5.23572538439122	5.37173833466724	5.55772127251857	5.13141483244229	5.07689306190726	5.06223871448733	-0.333497283251988	0.29665926277248	0.608580271057507
Merged-chr8-104384188-4	chr8	104384091	104384291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	intron (NM_153582, intron 1 of 3)	11616.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	5.71476534447822	5.31897461901897	6.33628306477654	6.35927583216862	5.57917633117607	5.47389369511859	5.87720701673807	5.88087670278913	-0.481092666817358	0.149960888257046	0.432360854406563
Merged-chr12-55368620-4	chr12	55368530	55368730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025373, intron 4 of 6)	intron (NM_025373, intron 4 of 6)	-15592.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	5.89807879021998	6.05891386018698	6.2954335893223	5.67956820130779	6.01947767317259	5.70315903517712	6.22884003431607	5.87142299660426	-0.0222808361301794	0.935674583600513	0.976639892179174
Merged-chr3-95154094-3	chr3	95154032	95154232	+	774.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6288.0	NR_073550	20360.0	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding	3.70385059870137	3.5968007154472	3.19045711146102	3.62248014245517	3.48511109761725	3.43632724422675	3.73384064787283	3.38334429194467	-0.0975273339358092	0.852923078223308	0.944672349828292
Merged-chr11-32556621-4	chr11	32556593	32556793	+	974.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	23427.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	4.75514907335968	4.87082362981492	5.13598566532187	4.83652164908916	4.47678874817349	4.5510726995378	4.40033409724298	4.63676996095492	-0.8293914406623	0.0185211772869015	0.121638575208005
Merged-chr5-43672331-3	chr5	43672240	43672440	+	992.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359906, intron 4 of 37)	intron (NM_001359906, intron 4 of 37)	9961.0	NM_001359903	231214.0	Mm.44434	NM_172274	ENSMUSG00000039765	Cc2d2a	5730509K17Rik|b2b1035Clo	coiled-coil and C2 domain containing 2A	protein-coding	4.61740557514811	4.78151939912531	5.55334591964825	4.99555849889919	3.87961021174548	4.09998794253741	4.12992015093571	4.14509633903233	-2.27514635096973	2.43921642436759e-07	9.62956105768501e-06
Merged-chr19-57610068-4	chr19	57609997	57610197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181415)	promoter-TSS (NM_181415)	-937.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	7.27115137338555	7.44560539263142	7.47913914687922	7.22512566545493	7.3057752885715	7.4600059565736	7.11289912066371	7.1786696687872	-0.112028463769408	0.552839514229638	0.799873237323185
Merged-chr2-72286560-3	chr2	72286457	72286657	+	980.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 1 of 19)	intron (NM_023057, intron 1 of 19)	856.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	4.59082749001606	4.35464622917123	4.55606719721288	4.54098434243071	4.19720860700775	4.03697311637467	4.06358776592745	4.07791342081088	-1.01464368074848	0.0104640090043827	0.0816059709568268
Merged-chr5-21567380-4	chr5	21567272	21567472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028977, intron 2 of 3)	intron (NM_028977, intron 2 of 3)	23845.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	5.44392006273633	5.10919699535197	5.6815824509387	5.95201784127871	5.24241030883036	5.26071023427706	5.76632234647325	5.55165899196015	-0.220185378181762	0.50756260876248	0.772869802740498
Merged-chr3-115997119-4	chr3	115997040	115997240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023214, intron 2 of 10)	U6|snRNA|snRNA	10266.0	NM_023214	66500.0	Mm.34550	NM_023214	ENSMUSG00000054414	Slc30a7	1810059J10Rik|2610034N15Rik|4833428C12Rik|AI467242|ZnT-7|ZnT7|Zntl2	solute carrier family 30 (zinc transporter), member 7	protein-coding	5.83048184870178	5.72388007334454	5.65310458428229	5.69844444741031	5.8475704054561	6.11922320077743	5.84821960233729	6.14100817887328	0.425687000510641	0.0879941771831895	0.32363651825155
Merged-chr7-42692789-4	chr7	42692692	42692892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008427)	promoter-TSS (NM_001008427)	-74.0	NM_001008427	434179.0	Mm.284947	NM_001008427	ENSMUSG00000069727	Zfp975	EG434179|Gm5595|mszf88	zinc finger protein 975	protein-coding	6.68546600806496	6.59741987763386	6.7018814109393	6.86571096901448	6.55121509166027	6.41090122357101	7.34796849036948	7.08456246978597	0.257873548310007	0.324994189899799	0.636488090877592
Merged-chr3-8916497-4	chr3	8916410	8916610	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025434, intron 1 of 2)	intron (NM_025434, intron 1 of 2)	7347.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	5.47583920880695	5.64989899074515	5.3237894571373	5.29620902397908	5.55582931722167	5.83775673332932	5.55900622104594	5.88682818511122	0.468943976774361	0.0920828271351562	0.331880271178644
Merged-chr15-8716682-6	chr15	8716558	8716758	+	856.511108	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5851.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	3.82430709133201	3.63817965939568	3.92621107617183	3.72601958727057	3.99138573071796	4.1870145668355	4.24251436042421	3.71378110754016	0.763144918880314	0.0905858617278562	0.328704618172112
Merged-chr16-18413202-4	chr16	18413113	18413313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007744, intron 1 of 4)	intron (NM_007744, intron 1 of 4)	281.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	6.47010953199453	5.91790683361343	6.67120595493276	6.88493061523171	6.22663073955399	6.16994551140929	6.2212529745429	6.7219916953418	-0.278038017779333	0.333782405342128	0.644557528456154
Merged-chr17-34304450-4	chr17	34304352	34304552	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1415.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	5.00870158211628	5.16072001070799	4.45294049329789	4.56686745381306	5.04357579000423	4.85686717447176	4.6990926769495	5.06893411335799	0.212094390325913	0.56695612266346	0.808119800518362
Merged-chr10-80087664-4	chr10	80087551	80087751	+	905.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359637, intron 1 of 3)	ID_B1|SINE|B4	-12212.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	4.71480431318313	4.43994191233853	4.59962848569116	5.07810769967224	4.41921544670471	4.55745816805102	4.49568514421496	4.78414144801448	-0.396096286528462	0.303847995124034	0.6165617765318
Merged-chr9-40616600-4	chr9	40616503	40616703	+	872.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69361.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	4.33386788341784	4.39771866079423	5.13466415029232	4.61071680656402	4.55304100166918	4.5591220080687	4.61358401985151	4.28270413063122	-0.319960100309511	0.429269367554601	0.720143399871997
Merged-chr16-85152646-4	chr16	85152545	85152745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	URR1B|DNA|hAT-Charlie	21062.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	7.07634765787355	7.2226820020713	7.38692610256012	6.98566985174849	7.52217767876562	7.54409447247798	7.53991224694614	7.25849597924861	0.411954882414444	0.0324773693974658	0.176466158499406
Merged-chr13-21180129-7	chr13	21180021	21180221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009054, exon 1 of 8)	5' UTR (NM_009054, exon 1 of 8)	190.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	5.79557624789931	6.04621225950699	6.38166340863343	5.96357316140652	6.22748144881956	6.12397641376758	6.38174010616349	6.3259658327954	0.323548859143927	0.187543416408909	0.485957858972414
Merged-chr6-76266898-3	chr6	76266808	76267008	+	906.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-975569.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	4.05698575042572	4.26050149704264	4.05762744843126	4.35974076641009	3.48258727644621	4.04041028510217	3.50149473082492	3.37117689744368	-1.70414335933772	0.000921721053161976	0.0126119151947359
Merged-chr1-7090903-2	chr1	7090803	7091003	+	925.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_183028, intron 1 of 5)	intron (NM_183028, intron 1 of 5)	1983.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	3.20758000816153	2.99231788421299	3.09214251915981	3.08380695581468	3.3473698039838	3.13882937717292	3.19548888437331	2.96366225189385	0.317935079685938	0.574142549279638	0.812108092694771
Merged-chr5-147418944-4	chr5	147418838	147419038	+	856.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033625, intron 1 of 2)	intron (NR_033625, intron 1 of 2)	318.0	NR_033625	100039805.0	Mm.394705	NR_033625	ENSMUSG00000106820	D5Ertd605e	Gm2433	DNA segment, Chr 5, ERATO Doi 605, expressed	ncRNA	3.88313456616922	4.11608762410376	3.72303376069652	4.17718891674485	3.82239426657633	3.72108833957716	3.86772698483519	4.024014850583	-0.385588393804257	0.398824965950691	0.696927853372062
Merged-chr10-40314753-3	chr10	40314658	40314858	+	924.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12570.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	3.61487255758379	3.43682237919849	3.72126179102757	3.94244200367615	3.5298665323382	3.78737728334682	3.54571708293335	3.86285152796939	-0.0607325294397778	0.903716118856452	0.964330447235044
Merged-chr10-82764067-4	chr10	82763928	82764128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010914, exon 1 of 8)	5' UTR (NM_010914, exon 1 of 8)	113.0	NM_010914	18045.0	Mm.245998	NM_010914	ENSMUSG00000020248	Nfyb	AA985999|Cbf-A	nuclear transcription factor-Y beta	protein-coding	8.32305170151523	8.15875256567683	8.35180413058934	8.31868802959086	8.48035255372207	8.50201267016853	8.61786938948723	8.27959421736519	0.235683337503278	0.135795383356771	0.410210057800434
Merged-chr14-33158475-4	chr14	33158401	33158601	+	860.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 2 of 58)	intron (NM_001146022, intron 2 of 58)	26565.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	4.45010659622294	4.35726978895761	4.10036281749187	4.23998432212785	4.09501217351998	4.45849368320958	4.26834738006494	4.04672246242674	-0.172616156846421	0.66942876612394	0.863479905771059
Merged-chr19-10948399-4	chr19	10948325	10948525	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023731, exon 1 of 4)	exon (NM_023731, exon 1 of 4)	841.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	4.89558395949321	4.93124454396067	5.3116258603863	4.75055418008628	5.14383160769542	5.03465620570686	5.20114667814063	5.06910007116833	0.277919892415007	0.39123264974077	0.691040061984853
Merged-chr3-69679461-4	chr3	69679410	69679610	+	908.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-42545.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	3.69105233323843	4.20652566370342	4.28925965983407	3.82852360340081	3.92972084809919	4.19759350065544	4.05470067632324	4.24601433965082	0.230562257993295	0.609205784255545	0.830893280400196
Merged-chr18-11822518-4	chr18	11822416	11822616	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045421, intron 3 of 3)	intron (NR_045421, intron 3 of 3)	-16758.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	5.21536752696621	5.17505908847243	5.34036021741102	5.40706669276724	5.56843412852591	5.18299519285811	5.55334967473525	5.24482856390532	0.201072377635962	0.494671413440671	0.765224301099017
Merged-chr4-139199858-4	chr4	139199741	139199941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	5730.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	6.08036910139016	6.35171820531236	6.43390242255457	6.47630296916249	6.39524056779558	6.32501644235156	6.72802430185914	6.41211270209717	0.176345234860575	0.447123767369568	0.732764620286541
Merged-chr6-108874615-2	chr6	108874472	108874672	+	952.0	f0_balb.idr|f1_balb.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	45931.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	3.00369565676268	3.21329089162692	3.22155077501261	2.8260820887476	2.69673697532852	2.92145860772511	2.80430210085452	2.81180071549267	-1.19751355795226	0.0634265918099095	0.26731253350924
Merged-chr14-63124923-3	chr14	63124831	63125031	+	902.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	2469.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	3.88681807687997	3.59992988914105	3.6003015633719	3.30866266405952	3.4649740110339	3.41509463119862	3.5856696381924	3.79641392545708	-0.101422176270311	0.845477002229613	0.94153555929146
Merged-chr17-6001570-4	chr17	6001470	6001670	+	984.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357667, intron 4 of 24)	intron (NM_001357667, intron 4 of 24)	-6010.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	4.99659002789885	5.09817432200722	5.03073435376088	5.11173010486234	4.66355400408679	5.06586951037665	4.83179873668079	4.8886616409679	-0.410044760921834	0.20107826263311	0.503307298799526
Merged-chr15-89211291-4	chr15	89211202	89211402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027805)	promoter-TSS (NM_027805)	-257.0	NM_026813	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	5.96023125060241	6.3189776920486	6.17091542638656	5.75573918504538	6.07299218667816	6.18192072698812	5.88473316895778	6.22307874506834	0.0610537979601211	0.81435732162961	0.928327532350968
Merged-chr17-35725698-4	chr17	35725577	35725777	+	912.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21078.0	NM_007584	12305.0	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	4.65923431321488	4.42187224002008	5.02220706158854	4.66082694210751	4.42544226122138	4.71398410010991	4.43334936452629	4.49446368950842	-0.409090029686842	0.273494136334	0.585133459876006
Merged-chr2-169087442-3	chr2	169087329	169087529	+	871.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109160.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	3.56117082872522	3.52760741691484	3.76820574664383	4.30403528208575	3.38122416886147	3.67958952781549	3.23794955303759	3.38046674406861	-1.33198070612368	0.0193620020553912	0.12520831691657
Merged-chr6-97278127-4	chr6	97278020	97278220	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25340.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	4.87806704951407	5.00271324681005	4.68749936486086	4.74016006292544	4.92220821352521	5.05052631160899	4.81977268113913	4.83950900790799	0.166840946769867	0.609126969644495	0.83089280248568
Merged-chr5-125059621-3	chr5	125059535	125059735	+	831.144409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 17 of 46)	intron (NM_011424, intron 17 of 46)	56160.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	3.77081323551624	3.6949114133115	3.57568870984981	3.55131769116007	3.56101827167503	3.39251430698318	3.56136206681301	3.2785624153485	-0.616248554229011	0.222945940194343	0.531069778572449
Merged-chr9-35050201-4	chr9	35050112	35050312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 9 of 10)	intron (NM_009178, intron 9 of 10)	-66516.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	7.94283241473035	8.20240706291794	8.1990992050306	7.91430287358435	7.84847493324496	7.98749792955975	7.94076563975412	7.91021838201937	-0.18944543301721	0.259027298028336	0.570794998659786
Merged-chr7-64155971-4	chr7	64155873	64156073	+	893.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039104, intron 1 of 26)	intron (NM_001039104, intron 1 of 26)	2138.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	4.21078839729555	4.42766776992585	4.55686850504568	4.6365197197636	4.29073993393152	4.33680690677274	4.53563488095612	4.43499443059446	-0.189485912988942	0.620164440837867	0.837084318577183
Merged-chr2-144214698-4	chr2	144214612	144214812	+	823.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25422.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	4.29191783389741	3.9961141126046	3.79431145157603	3.62107976242803	4.12517967998157	3.73638735425987	3.98131892130888	3.99632072251931	0.0919090041012364	0.84638276412714	0.941927981530162
Merged-chr18-35918419-4	chr18	35918317	35918517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46413.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	5.68188561981222	5.91559782403717	5.78033286445832	6.19919675919072	5.43122376021446	5.51505684206927	5.5492152862549	5.33205824276332	-0.790537240178399	0.0045466999210815	0.044266113210595
Merged-chr16-33915233-4	chr16	33915150	33915350	+	985.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	51788.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	5.42593047874901	4.95541559978783	5.50452764166776	5.81563392095572	4.79371310273801	5.04637391050703	4.99697032695594	5.22091347121316	-0.847195022902647	0.0138460019563705	0.0992292159940091
Merged-chr2-24571085-4	chr2	24570972	24571172	+	815.608337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95473.0	NM_011040	18510.0	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	4.23927554881774	4.50531236850117	4.56077377566213	4.92491790741133	4.3609520780819	4.65128044332845	4.91847943913629	4.3844189532812	-0.0097103238687499	0.981129378039854	0.993185067190483
Merged-chr16-16536637-1	chr16	16536537	16536737	+	760.0	f0_balb.idr	intron (NM_001301817, intron 1 of 16)	Lx7|LINE|L1	-9226.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	3.07455926510117	2.96971355314278	3.23768849300294	3.32148365515931	2.88583834796973	2.85277299074918	3.00511088067183	2.88726057386245	-1.10076005401049	0.0711457441645417	0.286100482273375
Merged-chr6-89258337-4	chr6	89258233	89258433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27392.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	6.84626098291668	7.04980487191336	7.0841171375899	7.41060345439929	7.00317535952323	6.99610515852218	7.16246880838865	7.40420010311709	0.0284868422383766	0.896351720152522	0.961081857177621
Merged-chr2-6251321-4	chr2	6251222	6251422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 2 of 6)	intron (NR_040333, intron 2 of 6)	-38328.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	5.89366701135648	5.63651887615712	5.87277197469086	5.91442666929664	5.83485437285417	5.66505006467833	5.30222012101598	5.75285187874765	-0.287675793951725	0.291554850979594	0.603887174097964
Merged-chr2-46302881-2	chr2	46302781	46302981	+	764.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	606276.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	3.4858394950166	3.30582045985891	3.20002300529199	3.10399422114937	3.60750559135618	3.49387702002021	3.30977721015844	3.32046585121114	0.60998475489048	0.251446266728105	0.56287087730158
Merged-chr7-4865867-2	chr7	4865764	4865964	+	944.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026158, intron 1 of 5)	intron (NM_026158, intron 1 of 5)	315.0	NM_026158	67441.0	Mm.41385	NM_026158	ENSMUSG00000052605	Isoc2b	0610042E07Rik|AI553388|Isoc2	isochorismatase domain containing 2b	protein-coding	2.47152839076712	2.73550394775019	2.47170454109905	2.53862254497949	3.08795639159189	3.17784987147604	2.88269608189166	3.00785797428102	2.2706928699296	0.000853421769127212	0.0118481974068082
Merged-chr14-55177472-4	chr14	55177373	55177573	+	781.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44534.0	NM_027790	71412.0	Mm.85484	NM_027790	ENSMUSG00000022209	Dhrs2	5430405K24Rik|Hep27	dehydrogenase/reductase member 2	protein-coding	3.39312760004756	3.53732173450292	3.51467440202781	3.51059986612662	3.66094363364164	3.79616922617503	3.71187360678598	3.81992862241978	0.789824824683083	0.0919547408460357	0.331623169614429
Merged-chr5-108031468-4	chr5	108031366	108031566	+	976.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-34208.0	NM_001359088	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	4.74487003074772	4.98280711211817	4.66003896242515	4.86627229273771	5.12993988938098	5.2129814190508	5.07972843353038	5.16239608464643	0.618766578476492	0.0480820688681334	0.226231727919412
Merged-chr9-110685776-4	chr9	110685680	110685880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	29277.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	5.46728246915845	5.54964825053183	5.46822312638324	5.65786439137936	5.5735563427864	5.90573705361646	5.60492683812206	5.72851074045254	0.255863587683619	0.338202276877765	0.647818742407743
Merged-chr17-71489892-4	chr17	71489815	71490015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-14572.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	5.63190062311403	5.75750612101902	5.57434319334225	5.64045712202117	6.06078689574191	6.33809681120416	6.4008044555532	6.19660659524628	0.938682069991795	0.000118760421643913	0.00233901629296934
Merged-chr5-125314137-3	chr5	125314040	125314240	+	764.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	26954.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	3.34141946242803	3.42781324477322	3.4009811811242	3.44344256632958	3.41620411674379	3.45518336954889	3.44417067082202	3.75017800423614	0.381011119638521	0.447469994616135	0.732976564773399
Merged-chr10-9675490-6	chr10	9675498	9675698	+	862.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177271)	promoter-TSS (NM_177271)	-390.0	NM_177271	320825.0	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	4.08716927134843	4.16320616717133	4.49838859876053	4.32882576167561	4.08989254816571	3.81565994626102	4.02158691786698	4.22294897709913	-0.59263242268871	0.162452007559113	0.451668741301125
Merged-chr10-81106187-8	chr10	81106127	81106327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347144, exon 1 of 11)	exon (NM_001347144, exon 1 of 11)	312.0	NM_001358539	26396.0	Mm.275436	NM_023138	ENSMUSG00000035027	Map2k2	AA589381|MEK2|MK2|Prkmk2	mitogen-activated protein kinase kinase 2	protein-coding	6.46825604597813	6.59895096691933	6.17005718918552	5.96653776007833	6.57425965625982	6.46749508035131	6.3326740526881	6.66429660309244	0.304367394256394	0.221754417675185	0.529833093743143
Merged-chr13-108158668-4	chr13	108158566	108158766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362403)	promoter-TSS (NM_001362403)	-41.0	NM_001127346	75597.0	Mm.276040	NM_001127346	ENSMUSG00000068184	Ndufaf2	1810058I14Rik|C86051|Ndufa12l|mimitin	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	protein-coding	7.95095120228863	8.02767887834524	7.94522024488576	8.0220353389931	8.05771535876579	7.86468243521493	8.19535255076568	7.91850550748416	0.0372167263028665	0.820044726554152	0.931124064497998
Merged-chr2-52925288-4	chr2	52925189	52925389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	67421.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	7.19312791659973	7.34373399975878	7.23673293317314	7.0266937074765	6.64749091761666	7.06839398361527	7.01030193752214	6.69404322240921	-0.469070711936989	0.0249176519137807	0.14810969065311
Merged-chr6-108659516-4	chr6	108659410	108659610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104577, intron 1 of 6)	CpG	-1119.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	8.15601379687699	8.30416534544879	8.43970795613914	8.53862868129874	7.87257736519116	7.75699587989092	8.09411223934958	7.81880113512438	-0.615627233246062	0.000423338225014086	0.00673358469682182
Merged-chr1-177483769-4	chr1	177483663	177483863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	37942.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	5.77928648377404	5.87898826645567	5.70551044638582	6.00167598988394	5.88649160063026	5.82892517730255	5.54239614867852	5.70148725537199	-0.174919536630105	0.500823060280167	0.769017904448726
Merged-chr2-26903552-1	chr2	26903452	26903652	+	585.0	f0_balb.idr	promoter-TSS (NM_009298)	promoter-TSS (NM_009298)	-665.0	NM_009298	20935.0	Mm.245577	NM_009298	ENSMUSG00000036160	Surf6	D2Wsu129e|Surf-6	surfeit gene 6	protein-coding	3.19274794657229	2.97479551102032	3.29594364757414	3.12234691246969	2.99434742488788	2.77938997267284	2.74421011815275	3.19136051952144	-0.86506919017729	0.172292739332527	0.465607080487109
Merged-chr10-44495607-3	chr10	44495511	44495711	+	920.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36863.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	3.75866396392588	3.88424207420225	3.86380666386698	4.1484285507069	3.93161809487661	3.76255452619681	3.74467124269117	4.00381560043149	-0.195239233694115	0.668380351014118	0.862948051435654
Merged-chr5-137836224-4	chr5	137836113	137836313	+	898.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153510)	promoter-TSS (NM_153510)	65.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	4.10146561933719	4.22326691570886	4.27299243124966	3.5795935358309	4.219549962323	3.66042118058969	4.17113250062727	4.00482056766383	-0.0737989383282742	0.880546899278568	0.955181994949486
Merged-chr13-10100894-2	chr13	10100794	10100994	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 3 of 4)	intron (NM_033269, intron 3 of 4)	259909.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	3.46755950236275	3.35477079358346	3.68876542824801	4.1230336638377	3.67113095394648	3.52066115559663	3.72264989769764	3.52495914631152	-0.29790335034369	0.584853833606621	0.817816455263651
Merged-chr18-11046263-3	chr18	11046165	11046365	+	830.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105023, intron 4 of 5)	MIR|SINE|MIR	-6245.0	NM_010258	14465.0	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	3.34425420271893	3.40589990657278	3.45225871031851	3.98962776118889	3.07748543318252	3.06646663781465	3.0207600742934	3.09732673089036	-2.03038949431438	0.00104004764321659	0.0138762045354289
Merged-chr7-118740163-4	chr7	118740054	118740254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027815)	promoter-TSS (NM_027815)	-117.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	5.87819379314554	6.1143577311656	5.28598795499321	5.80190382782006	5.62746262596626	5.78016990305525	6.31252093828677	5.62630376924812	0.0973692463818927	0.757673259421065	0.904815773586341
Merged-chr1-154117606-3	chr1	154117496	154117696	+	963.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83591.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	4.04888562070947	4.50262359871282	4.30691330330664	3.72637397656557	3.88074572623308	4.02198378991422	3.82869579138939	3.84185472349927	-0.744175810140306	0.118197478784014	0.380291024832406
Merged-chr8-19161040-3	chr8	19160956	19161156	+	855.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3169.0	NM_153115	78128.0	Mm.229357	NM_153115	ENSMUSG00000079842	Spag11a	9230111C08Rik|Bin1b|EP2Q|EP2e|Spag11	sperm associated antigen 11A	protein-coding	3.62571847452284	3.58213170876805	3.72851916620195	3.90623889463253	3.42585872140671	3.37407393337227	3.3182241210032	3.99055868200573	-0.519248274438204	0.334166661876221	0.644805241742718
Merged-chr3-135694476-2	chr3	135694376	135694576	+	661.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2929.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	3.2735055226531	3.33700468987595	3.15692642983663	2.96402902776775	3.18481747350985	3.20506107787756	3.36689127834952	3.21506868314252	0.239995851753064	0.665234941684446	0.861320791391846
Merged-chr3-131702094-4	chr3	131701982	131702182	+	918.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136050.0	NM_001289477	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	4.20576867997732	4.47583498653524	4.20637557443778	4.23807220698153	5.02501692042281	4.85506104780838	4.50915698129425	4.60660946868332	1.08096846785759	0.00391947680885392	0.0394359181154285
Merged-chr14-25832473-4	chr14	25832381	25832581	+	939.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9674.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	4.59683883919848	4.69420142754772	5.06626126459899	4.70663548202385	4.36917512055795	4.45811967047633	4.53550797510285	4.63447970228134	-0.602634231128634	0.0977568651132745	0.342560156519749
Merged-chr6-115853498-4	chr6	115853412	115853612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031177)	promoter-TSS (NM_031177)	-16.0	NM_001167763	81896.0	Mm.333335	NM_031177	ENSMUSG00000030323	Ift122	C86139|Wdr10|sopb	intraflagellar transport 122	protein-coding	8.22058528648312	8.30900800559422	8.00710697940951	7.81191786650969	8.1680331844341	8.37023289422251	8.18312599020148	8.09470044002892	0.14294862734686	0.43182770952931	0.721926614973461
Merged-chr2-104146133-2	chr2	104146033	104146233	+	586.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033347, exon 21 of 21)	3' UTR (NM_001033347, exon 21 of 21)	23364.0	NM_026634	68243.0	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	3.11393093546919	2.79912057646319	2.84071742174858	2.9215683788884	2.72165950189067	2.67375043916027	2.83054621074783	2.56933932099381	-1.05323271183856	0.110394332938775	0.366910638039272
Merged-chr2-103761294-4	chr2	103761186	103761386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153126)	promoter-TSS (NM_153126)	-16.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	8.07968295293034	8.15532506732953	7.97947261897891	8.08625262046856	8.28016298823271	8.28432540440842	8.16636737982009	8.37021310104865	0.254405376314521	0.0981340575015719	0.343365485862674
Merged-chr7-27178564-2	chr7	27178464	27178664	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_029391, intron 1 of 7)	intron (NM_029391, intron 1 of 7)	319.0	NM_029391	19342.0	Mm.482114	NM_029391	ENSMUSG00000053291	Rab4b	1500031G17Rik	RAB4B, member RAS oncogene family	protein-coding	7.5346171626855	7.47085852842791	7.55372640936028	7.39513040339307	7.55241098574859	7.48763394622868	7.64232711757261	7.30515392451994	0.0278367309496631	0.874979433510713	0.952974613103639
Merged-chr11-101316646-1	chr11	101316546	101316746	+	829.0	f0_c57.idr	intron (NM_011192, intron 1 of 10)	intron (NM_011192, intron 1 of 10)	433.0	NM_011192	19192.0	Mm.288477	NM_011192	ENSMUSG00000078652	Psme3	AA410043|AU020960|Ki|PA28gamma|REGgamma|pa28g	proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)	protein-coding	3.39335433489562	3.66630306411871	3.51514493826784	3.38711882926079	3.71335409507444	3.74428266136115	3.80629337929544	3.72644723833185	0.81074324535761	0.0856811989945454	0.318803035192512
Merged-chr15-34083399-2	chr15	34083299	34083499	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026002, exon 1 of 12)	exon (NM_026002, exon 1 of 12)	680.0	NM_001357925	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	5.10130030180768	5.22237717389592	5.62928220999322	5.56155631390751	5.32008774196787	5.47806521480918	5.27696555447743	5.49963420413137	-0.0258900608753806	0.931142054353199	0.975254729027921
Merged-chr6-128355910-4	chr6	128355806	128356006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011657)	promoter-TSS (NM_011657)	-55.0	NM_011657	22158.0	Mm.291783	NM_011657	ENSMUSG00000001521	Tulp3	2310022L06Rik|AI316887	tubby-like protein 3	protein-coding	4.98858422877048	5.00493017922722	4.754656949557	4.74837818887321	5.20558488306914	5.16515919310567	5.57243689575805	5.21461215320822	0.813537047409828	0.00942645273191327	0.0756784884959231
Merged-chr12-100639962-1	chr12	100639862	100640062	+	672.0	f0_balb.idr	intron (NM_153587, intron 3 of 17)	intron (NM_153587, intron 3 of 17)	85158.0	NM_001330702	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	3.42591070609956	3.76720009224409	3.42635253904046	3.48147779525921	3.27788490862004	3.541341032598	3.35501958294823	3.68585327506981	-0.213046182702958	0.682042359978086	0.869682098720609
Merged-chr5-145201504-2	chr5	145201405	145201605	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023322, exon 1 of 3)	exon (NM_023322, exon 1 of 3)	377.0	NM_023322	67235.0	Mm.432480	NM_023322	ENSMUSG00000029627	Zkscan14	2310046C23Rik|2810437E14Rik|Zfp99|Znf394	zinc finger with KRAB and SCAN domains 14	protein-coding	4.52796780624751	4.84466417858006	4.91828783891309	4.70619110726417	5.1026621360665	4.74813045053168	4.63631614732228	5.01166046381209	0.296965082862655	0.392942745430419	0.692205902019298
Merged-chr5-93194033-2	chr5	93193933	93194133	+	958.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017367, intron 2 of 6)	intron (NM_017367, intron 2 of 6)	12462.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	3.2950899315108	3.39790843589702	3.8163171038131	3.30680680515555	3.49037070925331	3.59124699873178	3.6170020296775	3.35634878296646	0.176574736457119	0.736370040990852	0.895967233293809
Merged-chr13-73604782-4	chr13	73604674	73604874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146047, intron 1 of 16)	intron (NM_146047, intron 1 of 16)	772.0	NM_146047	218335.0	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	5.60844706058674	5.91024893770357	5.52772332962422	5.28516533720513	5.6607260414089	5.61715919337091	5.72918210628474	5.65709786431848	0.130842087198051	0.64570732383651	0.850934142345746
Merged-chr16-57563422-3	chr16	57563347	57563547	+	954.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	14205.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	4.06549665242881	4.06263389861394	3.79075445842406	4.31293205866023	3.6808142344192	3.34038437663825	3.36229247652332	3.62528703018689	-1.71401947613694	0.00112565483625694	0.0147910255842593
Merged-chr4-135899280-4	chr4	135899170	135899370	+	815.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009924, intron 1 of 1)	intron (NM_009924, intron 1 of 1)	4081.0	NM_009924	12802.0	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	4.56322090968599	4.46581684445039	4.21519839759991	4.84352404236572	4.17002785276794	4.4400131486001	4.2928356780502	4.52228224603226	-0.46887161111925	0.245068670092594	0.556170860493583
Merged-chr1-192742097-1	chr1	192741997	192742197	+	544.0	f0_c57.idr	intron (NM_144881, intron 3 of 11)	intron (NM_144881, intron 3 of 11)	29122.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	2.52709310529414	2.46734656491733	2.44578380927122	2.42400652774932	3.17947028475548	3.2187827395776	2.9812279724001	2.93507822095682	3.09882878648717	1.14257762637338e-05	0.000310528953293742
Merged-chr16-92430912-4	chr16	92430807	92431007	+	984.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-30829.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	5.14488404563705	5.23855592622964	5.11175299603422	5.60221522543626	5.17698954311042	4.94047172630472	5.51700708117898	5.32891979210694	-0.0960244379220007	0.768144528907816	0.90927740139245
Merged-chr11-69122767-4	chr11	69122648	69122848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033041, exon 4 of 4)	exon (NM_033041, exon 4 of 4)	2295.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	6.09081802612917	5.93910603503366	5.49196856288968	5.65134830751694	5.74342564286353	5.84038185318743	6.02208948626647	5.76275583018002	0.0606704508031815	0.823741822262485	0.932387119655244
Merged-chr3-55627302-4	chr3	55627190	55627390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 57 of 57)	intron (NM_030595, intron 57 of 57)	-155220.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	5.94636459369485	5.30477121764189	6.08353538614019	6.29713260860127	5.27958581031614	4.93892573145627	5.66906494923171	5.69416096103092	-0.888203564327493	0.0109163343867085	0.0840105703656098
Merged-chr10-119052643-3	chr10	119052559	119052759	+	940.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR81A|LTR|Gypsy	-2160.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	4.00834079428449	3.63236009331795	3.49294232870101	3.82424121717881	3.69693659975038	4.04310514424096	3.65602015013634	3.72244559726994	0.082822823557099	0.86389403523658	0.948884460737394
Merged-chr11-51900001-4	chr11	51899890	51900090	+	891.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-42360.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	4.06890336965676	4.18999443890011	3.70718135838566	4.14955587084402	3.88754506776918	3.88518215998538	3.80646652673414	4.15402619295366	-0.302934357127218	0.500137018570606	0.768714895599853
Merged-chr11-107044503-3	chr11	107044408	107044608	+	869.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359590, intron 24 of 27)	intron (NM_001359590, intron 24 of 27)	16285.0	NM_001163473	69066.0	Mm.40679	NM_001163473	ENSMUSG00000078607	1810010H24Rik	-	RIKEN cDNA 1810010H24 gene	protein-coding	3.36447502481515	3.4506737408401	3.16832821198156	3.71981372177083	3.3432564794177	3.89925305604719	3.41168329377418	3.5865181040268	0.389231311691908	0.488169029629226	0.761186079869847
Merged-chr10-30778940-4	chr10	30778843	30779043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	Lx7|LINE|L1	24383.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	5.84916327831633	5.69534235623089	5.707248206429	5.69225926618621	5.65335469570959	5.90666784670799	5.5183920914527	5.84602613135139	0.00209513112584116	0.993550386095546	0.997702270136287
Merged-chr5-35105737-4	chr5	35105637	35105837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013587)	promoter-TSS (NM_013587)	-40.0	NM_013587	16976.0	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	7.06163945285975	7.35356425815164	7.08625129114155	6.67249735039947	6.75841909405385	7.10261603364232	6.8094854187181	6.85334707751711	-0.240977599716167	0.292341336840015	0.604654036582073
Merged-chr10-20655190-3	chr10	20655104	20655304	+	901.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	Lx8|LINE|L1	69874.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	3.19691208137319	3.41599480489558	3.36795254117052	3.24660956374507	3.08835225324582	3.36906592886206	3.18601867919873	3.25503251469463	-0.317240699628224	0.557444146630498	0.802650360635047
Merged-chr10-56107348-4	chr10	56107250	56107450	+	768.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163833, intron 1 of 1)	intron (NM_001163833, intron 1 of 1)	433.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	3.67197009903152	3.84037972934459	3.87570248527664	3.82056808725441	3.55022694293213	3.61196271422993	3.9484005721563	3.77592580572127	-0.237005253943164	0.611419789326515	0.832286272412929
Merged-chr12-98375557-7	chr12	98375462	98375662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	106927.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	5.61317223226435	5.54232618527958	5.991507292579	5.69566104494667	5.81389002153075	5.70676745267389	5.50129173644987	6.24366724965612	0.208836823482595	0.471020698185545	0.749675166007454
Merged-chr15-76766879-3	chr15	76766760	76766960	+	893.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	-43015.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	3.42444818026373	3.63312591257621	3.48326134503782	3.68663837422841	3.75223499228911	3.53820004670826	3.57843288393834	3.48147260669418	0.0862916186598848	0.86102964455779	0.947515986982142
Merged-chr11-23255763-4	chr11	23255658	23255858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134014)	promoter-TSS (NM_134014)	-283.0	NM_001035226	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	9.56748466468939	9.54266590525786	9.73267405953403	9.55978663714686	9.54192374858693	9.6922016788074	9.71931592136068	9.6202517695897	0.0515974088360529	0.703912152718272	0.880925455128412
Merged-chr18-75018725-4	chr18	75018623	75018823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027727)	promoter-TSS (NM_027727)	-49.0	NM_027727	69190.0	Mm.173826	NM_027727	ENSMUSG00000035765	Dym	1810041M12Rik|4933427L07Rik|C030019K18Rik	dymeclin	protein-coding	7.88711937520305	7.8334519681526	7.66854331295173	7.99322934999436	7.89125063280658	7.75671806438473	8.01812186413278	7.73001740890693	-0.00232517710894315	0.989323280222125	0.99568805162223
Merged-chr12-3823833-4	chr12	3823719	3823919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	16659.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	5.57049617727214	5.62162458662155	5.26902296729744	5.56191462500393	5.55277262136457	5.6635717706882	5.67048366476811	5.87608581777756	0.289458336356647	0.285180372332402	0.596953252281083
Merged-chr10-85502410-4	chr10	85502309	85502509	+	904.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028709, intron 1 of 16)	intron (NM_028709, intron 1 of 16)	-96002.0	NM_001017525	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	4.76454348231092	4.70021494222632	4.62985743158631	4.08493294281539	5.87355472703035	5.81309524603929	5.58916928818817	4.84538185336846	1.96507932799878	2.87907097047213e-07	1.12044501152124e-05
Merged-chr4-95390756-4	chr4	95390663	95390863	+	845.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-166744.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	4.84125623879569	4.4312470499704	4.59344009157455	4.91265241660576	4.48911931719148	4.13480989841225	4.49179701279893	4.55060967457007	-0.639443898085693	0.0974148424367565	0.342002701027309
Merged-chr10-128337656-4	chr10	128337547	128337747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026444)	promoter-TSS (NM_026444)	-80.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	8.0721390417225	8.33020608043478	8.07986558971484	7.87548093545822	8.075507402329	8.08678283146463	7.93512519265162	7.77296008308288	-0.1534807070177	0.396185992319851	0.695104735895268
Merged-chr2-49451582-4	chr2	49451533	49451733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172663, exon 1 of 14)	5' UTR (NM_172663, exon 1 of 14)	147.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	6.71439712087433	6.85588083738224	7.39701977005264	6.89418529552426	6.9318983344354	7.21989370711393	6.92113296601093	6.88530041832067	0.00848663988285895	0.970152670543712	0.9892892923197
Merged-chr13-9763225-4	chr13	9763114	9763314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347474, intron 1 of 14)	intron (NM_001347474, intron 1 of 14)	596.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	5.34646775916533	5.26386054686528	5.14659702350714	5.42100510826735	5.7900180414639	5.52350533041855	5.57121490440072	5.80535867726904	0.643648495678926	0.020274510213497	0.129238101158064
Merged-chr16-19733122-3	chr16	19733021	19733221	+	771.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26756.0	NM_177356	239739.0	Mm.258059	NM_177356	ENSMUSG00000041247	Lamp3	1200002D17Rik|Cd208|DC-LAMP|DCLAMP|LAMP|TSC403	lysosomal-associated membrane protein 3	protein-coding	3.69131261787185	3.41053344282545	3.47982512412036	3.59945168946992	3.54648925536695	3.40738694006148	3.72346385280075	3.68966017375069	0.146609261359398	0.765046326990579	0.907995806594008
Merged-chr6-135350365-3	chr6	135350255	135350455	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12576.0	NM_010128	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	6.07905084392819	6.04019230078219	6.50662762078571	6.74915329521781	4.42512494351914	4.36855047647035	4.45583593509699	4.64074395314577	-3.63595071091722	2.79773564672864e-22	1.26037990885125e-19
Merged-chr2-3526505-4	chr2	3526401	3526601	+	879.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177647)	TTS (NM_177647)	13436.0	NM_177647	227526.0	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	5.05276521282005	4.47761144363524	4.41955900440325	4.76119377967737	5.0578148097167	4.92989116361238	4.77070221102951	4.20951486389838	0.172369430666303	0.674621697706869	0.866219857870971
Merged-chr8-80874359-4	chr8	80874259	80874459	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021356, intron 1 of 9)	intron (NM_021356, intron 1 of 9)	6120.0	NM_021356	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	5.97150438189558	6.12690666221454	6.44951414589608	6.35840334845336	5.46815302535426	5.18054234818795	5.75803547341078	5.65274120977465	-1.14946667919135	3.40154831555312e-05	0.000807331802443332
Merged-chr4-88868287-6	chr4	88868115	88868315	+	958.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	11986.0	NM_177348	230405.0	Mm.246593	NM_177348	ENSMUSG00000045364	Ifne	Ifn-tau-1|Ifne1|Ifnt1|Infe1	interferon epsilon	protein-coding	4.25739602770144	4.30565639972273	4.11585481900223	4.17994674469265	4.52888793185257	4.24081757011668	4.19415148515929	4.38319325382539	0.335011790585325	0.388705759436062	0.689075503405947
Merged-chr8-66438059-4	chr8	66437956	66438156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	48474.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	6.82710073982742	6.77867387610449	6.77199470227244	6.80285315960663	6.81025096794942	6.6234625533363	7.06374165010281	6.85066918258092	0.0734135650128036	0.715558281504715	0.886319285643591
Merged-chr2-125247513-6	chr2	125247406	125247606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023595)	promoter-TSS (NM_023595)	-9.0	NM_023595	110074.0	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	6.64992134879142	6.72768517132071	7.13390877783111	6.75058096733042	6.6009128341705	6.49440116558397	6.60163805638349	6.76458977871023	-0.292174624645228	0.179467082585227	0.475694029616962
Merged-chr19-45581470-4	chr19	45581348	45581548	+	945.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 6 of 8)	intron (NM_013907, intron 6 of 8)	20863.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	4.4742092866307	4.36011051169866	4.24563194005552	4.23970965413118	4.82797105043619	4.47167704750299	4.61078928835416	4.70177967467587	0.77390825574859	0.032710080651516	0.177257010330739
Merged-chr16-35869322-4	chr16	35869240	35869440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039530, intron 1 of 16)	intron (NM_001039530, intron 1 of 16)	2042.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	7.37048381618746	7.80516760662232	6.87553352979674	6.67496486431415	7.41577257769181	7.74670662719288	6.89697012041236	6.99458953639893	0.0705165289896402	0.814148346012403	0.928273613135402
Merged-chr9-64786105-4	chr9	64786048	64786248	+	896.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24863.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	4.62907791497436	4.2874470467657	4.51715043066282	4.69087557516113	4.26411090261615	4.4779763783081	4.28499631078331	4.2538806165873	-0.535228045735245	0.161622095379397	0.450552968731959
Merged-chr15-75019686-3	chr15	75019582	75019782	+	648.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-21651.0	NM_010738	110454.0	Mm.425949	NM_010738	ENSMUSG00000075602	Ly6a	Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP	lymphocyte antigen 6 complex, locus A	protein-coding	2.61576564033238	2.72751962420172	2.5380238517562	2.1780712244284	2.91393648738839	3.06714223358684	3.15497008451809	3.11705180785597	2.7578222008797	0.000447844213884462	0.00705714042507907
Merged-chr17-42840802-2	chr17	42840709	42840909	+	564.5	f0_balb.idr|f1_balb.idr	intron (NM_009847, intron 3 of 17)	intron (NM_009847, intron 3 of 17)	35615.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	2.86567693067666	2.64698702022793	2.53647415294957	2.63220913114757	2.18275625639241	2.19581732340125	2.25283189702258	2.17809377774545	-3.64155959478429	0.000458534620798555	0.007196920788053
Merged-chr10-86990766-4	chr10	86990664	86990864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 3 of 68)	intron (NM_138673, intron 3 of 68)	17178.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	6.12454331823535	6.17932491441159	7.34572930548833	7.05933898214643	6.85004835043492	6.16083787714795	6.93004996893046	6.73757396977602	-0.123406026025679	0.802290210890056	0.923809611119182
Merged-chr11-59191907-4	chr11	59191830	59192030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008193)	promoter-TSS (NM_008193)	22.0	NM_008193	14923.0	Mm.3624	NM_008193	ENSMUSG00000020444	Guk1	AA409738|AL033299|AL033300|AV026611|Gmk|Guk-1	guanylate kinase 1	protein-coding	6.41452272627339	6.07500866902447	6.3789538585288	6.02625850396579	6.87930121682003	6.96442713662047	6.78056429187448	6.93556991732317	0.980588596400874	6.39710429268245e-06	0.000184871898680002
Merged-chr3-126652563-3	chr3	126652464	126652664	+	643.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	55613.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	3.86343073823851	4.3075513011186	3.69308851541144	3.53265274396482	4.00540798628508	4.233215466989	4.04389232141377	4.05953298403592	0.56032475323881	0.239982524988032	0.550432792793357
Merged-chr15-97247964-4	chr15	97247853	97248053	+	831.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164563)	promoter-TSS (NM_001164563)	-666.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	3.79059340106579	3.59805808715079	4.13278647762559	3.79871874958617	3.74523738317201	3.36636753835022	3.44506958228913	3.7888912174626	-0.714819952240545	0.164366191239549	0.454540624198292
Merged-chr10-118709870-4	chr10	118709746	118709946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-153321.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	7.2849877684404	7.81094254886828	8.2317138784132	7.70154158876513	7.70351412299987	7.5886666131321	7.68109662263943	7.43744982782685	-0.252251032337404	0.262512037846712	0.574303319449388
Merged-chr3-144933266-4	chr3	144933138	144933338	+	985.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033199)	promoter-TSS (NM_001033199)	-709.0	NM_001033199	99709.0	Mm.440040	NM_001033199	ENSMUSG00000074195	Clca4b	AI747448|Clca7	chloride channel accessory 4B	protein-coding	5.73959598344447	5.46688519585236	6.32784559399081	6.371215162464	4.97021702207065	5.24095683170452	5.58481783195783	5.37595339437323	-1.23569031250552	0.000266313510715424	0.00459649112008078
Merged-chr16-30416060-4	chr16	30415961	30416161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27531.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	6.32420959697928	6.5499581118455	6.39582098720627	6.13887150231281	6.51774083328265	6.46425778014578	6.01117864035638	5.91909132611379	-0.134887425369247	0.60382001845575	0.828350269166784
Merged-chr16-76356129-4	chr16	76356012	76356212	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	16937.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	4.78240863529409	5.46004857447237	5.56475130374842	5.57142388656975	5.46456326460332	5.6045431984005	5.34604424812859	5.45483571630893	0.130822103544887	0.68223976412113	0.869682098720609
Merged-chr6-50188189-4	chr6	50188101	50188301	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361248, intron 11 of 13)	intron (NM_001361248, intron 11 of 13)	73568.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	5.50993883204591	5.00825484467177	5.31017936893038	5.89963335859454	5.43678863208897	5.42286424043157	5.11974974772125	5.50701195278847	-0.198092146742574	0.55582885194166	0.801705036623952
Merged-chr19-5690585-2	chr19	5690485	5690685	+	863.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_022012, exon 3 of 12)	exon (NM_022012, exon 3 of 12)	1454.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	2.50426183139564	2.43355139332278	2.28264271240011	2.53472820103565	2.63008059536337	2.80155134877345	2.62456858759599	2.63293016580419	1.15799824520219	0.0979895315740908	0.343045291555784
Merged-chr7-74908504-4	chr7	74908405	74908605	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121706.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	5.583888064158	5.00316743637724	5.6906003741793	5.98880060175195	5.76661218753588	5.58663244266003	5.93254204646716	5.99905228694937	0.329127800860403	0.307249010098994	0.619449859505348
Merged-chr7-140912430-4	chr7	140912347	140912547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6383.0	NR_015583	212965.0	Mm.387212	NR_015583	ENSMUSG00000109628	BC024386	BC039766	cDNA sequence BC023486	ncRNA	5.67634110121452	5.70492089664334	5.84312683649084	5.39322137709821	5.44110236801173	5.60386028929605	5.93894537028595	5.6983559770121	0.0468559449042012	0.868896747992664	0.950884643021044
Merged-chr10-27378250-3	chr10	27378158	27378358	+	965.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008481, intron 4 of 63)	intron (NM_008481, intron 4 of 63)	-11608.0	NR_131034	75855.0	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA	5.1772946338974	4.21442723776703	5.17825002219159	5.77476615820483	3.86926495288587	3.89061580065346	3.94855569928512	4.25500364122494	-2.77483459368571	4.89820686841188e-08	2.24500622464063e-06
Merged-chr10-59302887-2	chr10	59302787	59302987	+	933.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK10C-int|LTR|ERVK	-20409.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	3.32455853790927	3.04925657740422	3.42823362853288	3.11578453104608	3.04595678860107	3.06397364180621	3.25721851544171	3.37568163920861	-0.154459204793156	0.786052243149207	0.916758964977029
Merged-chr11-32650548-4	chr11	32650448	32650648	+	975.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	7993.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	4.9202973520633	5.06858913743782	4.64195243828125	4.53313656929605	5.00907313217815	5.02283663688315	5.15390172829666	5.2332806602894	0.613795874713114	0.0679731539757061	0.278300898868955
Merged-chr11-53783436-4	chr11	53783330	53783530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12957.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	6.83926400325314	6.78049512744125	6.7154284651126	6.65671472628376	6.52407111837469	6.68655984714383	6.36906917016189	6.8746295707462	-0.174341753969814	0.419103368917559	0.712251159515261
Merged-chr7-80115382-4	chr7	80115272	80115472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173011)	promoter-TSS (NM_173011)	-22.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	6.61911254553977	6.82663125763447	7.00082226690058	6.96218729887879	6.62951763058952	6.74792604241253	7.11367110640889	7.08946960146436	0.0571017089214207	0.79696110552428	0.921466077162776
Merged-chr10-120231889-4	chr10	120231781	120231981	+	946.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025431, exon 3 of 3)	3' UTR (NM_025431, exon 3 of 3)	4821.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	4.04238216453325	4.31809532240679	4.40453425181042	4.20120808264611	4.21052392077443	4.21867407943164	4.34448503500633	4.18815521768963	-0.0116981307008016	0.976280026290661	0.991528225629167
Merged-chr17-35359564-2	chr17	35359415	35359615	+	874.2333369999999	f0_balb.idr|f1_balb.idr	Intergenic	CpG	17182.0	NM_010392	15013.0	Mm.427969	NM_010392	ENSMUSG00000091705	H2-Q2	BE136769|Gm11132|H-2Q2|gs14-2	histocompatibility 2, Q region locus 2	protein-coding	3.65446502085319	3.86773660409471	3.65502712867009	3.67084093586284	3.09096430588664	3.31446277824693	3.05057385387387	3.2653588062416	-2.00646343423778	0.000411101181616169	0.00657863556795353
Merged-chr15-101174425-2	chr15	101174325	101174525	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007395, intron 1 of 8)	CpG	353.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	3.4078535116471	3.6183081486245	3.34677957382171	3.54215986866792	3.69128287511327	3.4597355850351	3.71001019541909	3.62669688501658	0.446586481249603	0.362842954746281	0.668049629484881
Merged-chr3-106759334-2	chr3	106759234	106759434	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007651, exon 8 of 8)	3' UTR (NM_007651, exon 8 of 8)	30815.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	2.70223340665714	2.8762752557501	2.91089106609899	3.11291271059059	2.88105072186555	3.01927269300615	2.96310905267778	3.34126101216756	0.585852346693359	0.358720194951908	0.664688518677614
Merged-chr16-23592685-3	chr16	23592603	23592803	+	833.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17216.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	4.13047073289406	3.92063364864182	4.55238826707958	4.29835177769876	3.88561517436401	3.82535561628996	3.80997361044087	4.17317828031906	-0.830300870616131	0.0666002991391656	0.275101131176107
Merged-chr12-40536206-7	chr12	40536042	40536242	+	866.357117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	MLTR11A|LTR|ERVK	90089.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.00802457338578	4.22008781227197	4.05610278644259	3.99915092630482	3.94361029924331	3.80010203296048	3.99171618468576	4.22658263063548	-0.193998421207635	0.650549740631493	0.853305568650887
Merged-chr2-78580232-4	chr2	78580122	78580322	+	969.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-288825.0	NM_009454	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	5.60802702809425	6.08889176437852	5.78349686755502	6.46095268867333	4.82937819275231	5.35126676083756	5.49817492258479	5.3715193057086	-1.29596944901928	9.83016900619559e-05	0.00200258042270176
Merged-chr3-115816075-4	chr3	115815967	115816167	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71992.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	5.45838659527428	5.27465444470312	4.69819965127496	5.24809664830584	5.34078641432139	5.16982906991781	5.62299790822565	5.06151192178028	0.212408820985723	0.528014364432888	0.784690463628874
Merged-chr6-108702794-4	chr6	108702706	108702906	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41872.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	5.43089411900854	5.70800598976188	5.37147570918875	5.55368135756498	5.68411990855666	5.16094280940517	5.84450999799509	5.54068133022612	0.104590292817691	0.721707107038026	0.888884104579521
Merged-chr12-117831751-4	chr12	117831681	117831881	+	884.2374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12080.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	4.68477628397445	4.61358241936432	4.48054261641719	4.87031316174825	4.67526389986518	4.65556602107778	4.46070266777518	4.75592721538907	-0.0944576214402165	0.79136578217854	0.919050824109746
Merged-chr7-19267223-4	chr7	19267121	19267321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009499, intron 1 of 12)	intron (NM_009499, intron 1 of 12)	4633.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	6.56017912953191	6.12539450502191	6.3217468415728	6.54728804988578	6.57055672712563	6.42104305864596	6.52781884863418	6.44264243829552	0.128132186984077	0.57024090387228	0.809916884259967
Merged-chr15-99342820-4	chr15	99342722	99342922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310622, intron 1 of 25)	intron (NM_001310622, intron 1 of 25)	27660.0	NM_001310623	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	6.44823596612539	7.0395957685723	5.99739465591953	5.51461431564196	6.28930879645584	6.13001418557356	5.74609681096493	5.71667939926822	-0.57335969832769	0.117210339120672	0.378682551510059
Merged-chr12-54655628-4	chr12	54655522	54655722	+	945.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134054, intron 1 of 1)	intron (NM_134054, intron 1 of 1)	950.0	NM_134054	104725.0	Mm.485026	NM_134054	ENSMUSG00000044408	Sptssa	1110002B05Rik|AA407909|AA409588|AU041967|Ssspta	serine palmitoyltransferase, small subunit A	protein-coding	5.32882153052512	5.27750659476097	5.41241361945589	5.65744515098322	4.6693995101776	5.07171223860759	4.86924038630661	5.23761754515798	-0.885808401293301	0.00647303641827173	0.0573921598425714
Merged-chr2-4591142-3	chr2	4591058	4591258	+	720.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 5 of 11)	intron (NM_001177844, intron 5 of 11)	31404.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	3.1752694767758	3.58819806611442	3.31028719108745	3.21361459109071	3.8662284235976	3.66256222125302	3.68049713663986	3.54299940225923	1.21413985506564	0.017455898936535	0.116753752152192
Merged-chr1-155447480-2	chr1	155447380	155447580	+	822.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30036.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	3.16457273078968	3.18493801812715	3.16491723626745	3.46786933737051	3.31058013750907	3.63576803272388	3.77711564180772	3.46395293015948	0.974429775414228	0.0798570084755739	0.306059767730071
Merged-chr9-120691757-3	chr9	120691654	120691854	+	716.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114423.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	3.92823576034808	3.56334031766734	3.63024033252258	3.6968686713195	3.06359553802505	3.14171192957185	3.22802897244889	3.02785687031106	-2.29801128977013	0.000109929946875418	0.00219609982841577
Merged-chr5-121564595-4	chr5	121564500	121564700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18708.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	5.47941332304626	5.78536369234421	5.26595936465117	5.37835910386053	5.57109772325462	5.6268447995956	5.72823589005381	5.29522970084043	0.129489585682494	0.655925342478288	0.856391692651398
Merged-chr6-125330760-2	chr6	125330660	125330860	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011324, intron 1 of 11)	intron (NM_011324, intron 1 of 11)	9420.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	3.12525160513621	3.10576651104026	3.00764507552631	2.69605000630612	3.13711372444554	2.91601357500717	2.93449843155507	3.23181579854778	0.319493509686978	0.603966768786662	0.828350269166784
Merged-chr17-72918280-4	chr17	72918193	72918393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029999)	promoter-TSS (NM_029999)	-12.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	7.79286104137264	7.96475299575015	7.73061343274479	7.77068640131929	7.8995344081573	7.76117487600955	7.76409288055301	7.94176900927259	0.0377882747418762	0.819620028198058	0.930948039985942
Merged-chr9-108640012-4	chr9	108639911	108640111	+	859.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357286, intron 3 of 16)	intron (NM_001357286, intron 3 of 16)	9397.0	NM_011790	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	4.11648778496306	3.82209473138967	4.20442162344152	4.33199589102367	3.92991798926616	4.04445365341545	4.22628621939329	3.75246892355758	-0.378006714810155	0.399694656243921	0.697861775510926
Merged-chr15-78587475-4	chr15	78587369	78587569	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5880.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	5.82507360414367	5.9254556504991	5.43776745439284	5.17909125137801	6.06423236884004	5.35183541347616	5.83972992978035	5.33993005584684	0.134335937245316	0.69209558363329	0.874769982197176
Merged-chr4-8535628-4	chr4	8535529	8535729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021518)	promoter-TSS (NM_021518)	-15.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	7.7575312745066	7.74717204171055	7.66753626819975	7.73029412243978	7.86220057844221	8.02139420922716	8.2883256390666	7.68785935300374	0.332327263868207	0.074544779013672	0.294337539547022
Merged-chr12-71831734-5	chr12	71831637	71831837	+	907.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026102, intron 1 of 25)	CpG	669.0	NM_172464	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	4.26545075006183	4.21401788592847	4.44092605888883	4.19913274975392	4.30078014417812	4.24414122404741	4.46016686554632	4.79105645098346	0.441961745170189	0.260307249849529	0.572058715521924
Merged-chr17-17881491-4	chr17	17881418	17881618	+	730.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013521, intron 1 of 1)	intron (NM_013521, intron 1 of 1)	2421.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	3.35395977410125	3.2431012623338	3.29153207523331	3.35453736943096	3.42848503144085	3.64432066051024	3.70899633209659	3.81219548175554	1.10917867685991	0.0277504252974089	0.15910169329394
Merged-chr2-4501879-4	chr2	4501814	4502014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	HAL1|LINE|L1	-57840.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	5.6284045290737	5.50063014260606	5.24833762852652	5.53474286011413	5.58475430931451	5.61389142924429	5.8088569228977	5.49212675828598	0.236520258040823	0.386493726471377	0.687635667106349
Merged-chr16-35056965-4	chr16	35056799	35056999	+	844.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023587, intron 3 of 6)	intron (NM_023587, intron 3 of 6)	34478.0	NM_023587	70757.0	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	4.11245029008607	3.94077837855917	3.77740766688847	4.35680068846364	3.92477712187897	3.58715408520119	3.96270231422444	3.66118065570099	-0.774578377993276	0.109324717788055	0.365153157665133
Merged-chr13-59676962-4	chr13	59676798	59676998	+	880.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1114.0	NM_027307	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	3.44202292513023	3.77581309677033	3.66955492034236	3.03722576104073	3.65340486960621	3.89180953114363	3.75306369656922	3.61425549626517	0.704419380703261	0.194638350289909	0.495109825433686
Merged-chr9-85328547-4	chr9	85328455	85328655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1405.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	6.22753936030748	6.44796499097178	6.07738852559953	6.52846142143423	6.64257102998468	6.69412879710058	6.48533965879618	6.53009152607687	0.352787666444374	0.121140115953821	0.385390724845415
Merged-chr10-41304280-1	chr10	41304180	41304380	+	608.0	f0_balb.idr	Intergenic	Intergenic	-1039.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	3.54974668517312	3.56120851561346	3.37537833877395	3.71012142559817	3.4717380411162	3.54947808909761	3.68924170493344	3.79520182814824	0.200288349090846	0.686551622859045	0.871787672169905
Merged-chr15-58888999-4	chr15	58888885	58889085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175226)	promoter-TSS (NM_175226)	-244.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	7.79449868493818	7.9639980512861	7.83419710597539	7.56915806329259	7.96301571043855	8.11324698602488	7.9045624762174	7.79829263554482	0.205845828854765	0.247853123679229	0.559021353152095
Merged-chr7-67230953-2	chr7	67230853	67231053	+	818.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291191)	TTS (NM_001291191)	8337.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	2.81758490248541	3.01670927032711	3.0725984144639	3.05717796054281	3.05084774026168	3.12190438745458	3.0028044078695	3.07099515745227	0.254390792469892	0.658816001365964	0.85801674422085
Merged-chr1-173420520-4	chr1	173420430	173420630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013779)	promoter-TSS (NM_001013779)	-74.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	7.18104342806338	7.39398283170586	6.62010372006672	6.86285626918702	7.14302205849211	7.10939766002175	7.11352502384982	6.45393528328874	-0.0816432844710713	0.751754313942929	0.902294431953731
Merged-chr1-178463845-4	chr1	178463709	178463909	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026626, intron 3 of 6)	ERV3-16A3_I-int|LTR|ERVL	57791.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	3.84662979006323	4.11924684009218	4.63710063021609	4.17767167242327	3.83555074644117	4.34163384272497	4.51290694927451	4.16452230664649	0.0226693675766762	0.961129419919742	0.98607960708679
Merged-chr9-109017332-4	chr9	109017230	109017430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 9 of 13)	intron (NR_153430, intron 9 of 13)	-21237.0	NM_001284332	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	6.11569339707316	6.81636585792665	6.17796754473767	6.03597886303475	6.08460905007646	5.93731627924509	6.31290695320717	6.091340109573	-0.319726803352877	0.250710340303806	0.56195085377518
Merged-chr2-32857815-4	chr2	32857728	32857928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10591.0	NM_001113569	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	5.68019864310894	5.63440627457854	5.26736036857285	5.40339846385147	5.20564222918662	5.75616322979754	5.27341663402175	5.35791180680588	-0.16879188423521	0.575460620202095	0.813035162472508
Merged-chr17-6778446-4	chr17	6778339	6778539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	4341.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	7.18616385528615	7.46913424797518	7.00996639891644	7.1384390290972	7.05863184377577	7.05356759359046	7.08363231784763	6.9531704704069	-0.237532713286497	0.226575755099159	0.53520075526854
Merged-chr11-117176568-3	chr11	117176460	117176660	+	875.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23101.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	3.4957126985971	3.45551963490578	3.1880547730544	2.83169504028275	3.51621755258373	3.77314855138752	3.48165083129647	3.74334834441964	1.25626443102327	0.029057062582446	0.163886898380026
Merged-chr17-26113320-4	chr17	26113215	26113415	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021793)	promoter-TSS (NM_021793)	-1.0	NM_021793	60455.0	Mm.304656	NM_021793	ENSMUSG00000024180	Tmem8	AW490096|GPI-PLA2|M83|Pgap6|Tmem8a	transmembrane protein 8 (five membrane-spanning domains)	protein-coding	5.717900017958	5.52940236525688	5.16973466843559	5.35254905184338	5.56415125245862	5.27732827147305	5.33424128493291	5.09571775979511	-0.199893546054212	0.514349226948016	0.776966017760127
Merged-chr4-136249944-2	chr4	136249844	136250044	+	854.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011542, intron 1 of 10)	intron (NM_011542, intron 1 of 10)	1987.0	NM_011542	21401.0	Mm.112	NM_011542	ENSMUSG00000001604	Tcea3	S-II|SII-K1	transcription elongation factor A (SII), 3	protein-coding	3.55417516107796	3.74455750395795	3.29971172716217	3.50129689445482	4.16520029761795	3.67201848490724	3.65110541697605	3.81439935908748	0.954900579283666	0.0570364532142017	0.250277653919706
Merged-chr15-64092750-4	chr15	64092644	64092844	+	921.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 27 of 28)	intron (NM_001276461, intron 27 of 28)	-32296.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	6.02974857048567	5.36688781336304	6.13309889228028	5.77293640299826	4.83207149750944	5.12727778609559	4.74265725263055	5.13191512889713	-1.59378949291407	1.51634248057652e-06	5.11524840876571e-05
Merged-chr11-4710235-4	chr11	4710062	4710262	+	861.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026015, intron 1 of 5)	intron (NM_026015, intron 1 of 5)	5506.0	NM_001356390	67178.0	Mm.271056	NM_026015	ENSMUSG00000009076	Zmat5	2610510L01Rik|D11Bwg0572e|D11Bwg1548e	zinc finger, matrin type 5	protein-coding	3.2993985791722	3.18294071656758	3.0364641341835	3.03719624689428	3.15725933838227	3.53219665929732	3.60032115733621	3.74753491909843	1.3627269768778	0.0137514896452392	0.0987208554168919
Merged-chr2-165319702-4	chr2	165319574	165319774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	1152.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	7.23647341484456	7.36994355941113	7.38171648240338	7.42701780372677	7.03307601451713	7.27682583700226	7.20154006213986	7.16552600777123	-0.264250463438424	0.144431178794897	0.423552524532054
Merged-chr13-49215590-1	chr13	49215490	49215690	+	1000.0	f0_c57.idr	intron (NM_026738, intron 1 of 5)	CpG	436.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	5.67315613827085	5.33652833620691	5.67415394967807	5.51932070895419	5.12000154252216	5.54897902791434	5.57033250641538	5.87235300584638	-0.0140732725183501	0.963074012973655	0.986806397465601
Merged-chr7-4705313-3	chr7	4705204	4705404	+	816.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001168572, exon 10 of 10)	3' UTR (NM_001168572, exon 10 of 10)	14376.0	NM_001168572	381979.0	Mm.297064	NM_001003920	ENSMUSG00000035390	Brsk1	Gm1100|SAD-B|SADB	BR serine/threonine kinase 1	protein-coding	3.59550143882648	3.36613799005302	3.59601635508009	3.6681117183574	3.35295678025058	3.60523503228469	3.42097013864365	3.43190948977127	-0.386540206539822	0.442822124050116	0.72958107334361
Merged-chr5-121835544-4	chr5	121835405	121835605	+	979.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306127, intron 1 of 8)	intron (NM_001306127, intron 1 of 8)	599.0	NM_001306126	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	4.33673250776464	4.45884821273134	5.06521948928983	4.384960821792	4.40871504792413	4.26351001247618	4.40770946244417	4.54949708951485	-0.39659334209755	0.330874529357212	0.642104407905452
Merged-chr1-165682161-4	chr1	165682039	165682239	+	935.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	25955.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	4.52715861880494	4.73778302719561	4.3998670207792	4.23497797185982	4.71062851723101	4.43584269004055	4.69343000907668	4.35155529453169	0.194534418598989	0.613179594655811	0.833119630742334
Merged-chr1-175619990-4	chr1	175619873	175620073	+	794.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010209, intron 1 of 9)	RMER19B|LTR|ERVK	5662.0	NM_010209	14194.0	Mm.41502	NM_010209	ENSMUSG00000026526	Fh1	Fh|Fh-1	fumarate hydratase 1	protein-coding	3.973497830443	3.8169072979286	3.97408867607924	3.93093654879861	3.89481643866488	3.83501584661607	3.95699651943985	3.87497471009327	-0.0909877504135147	0.83194826326323	0.935667305160871
Merged-chr3-144716060-4	chr3	144715944	144716144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 1 of 10)	intron (NM_001282037, intron 1 of 10)	4291.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	4.91479395673822	4.83564250861838	4.99078849469774	5.32320642074938	5.52460008692647	5.23669984264355	5.19805828357291	5.2202983536403	0.47668038362351	0.143139171363014	0.421297445881944
Merged-chr15-43282417-2	chr15	43282317	43282517	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008388, intron 1 of 12)	CpG	319.0	NM_008388	16341.0	Mm.289992	NM_008388	ENSMUSG00000022336	Eif3e	48kDa|Eif3s6|Int6|eIF3-p46|eIF3-p48	eukaryotic translation initiation factor 3, subunit E	protein-coding	6.06943861176913	5.9688465547317	6.30333991065771	5.78361613394922	5.96000389343204	6.08974669379092	6.12139531744975	6.72830998207657	0.344913765237243	0.220778430114549	0.528779160709427
Merged-chr9-110682557-4	chr9	110682454	110682654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	MIR|SINE|MIR	26051.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	5.52564592305881	5.34603840599764	5.20830915604241	5.51092280580148	5.86489066071836	5.8596959671678	5.65658626629356	6.00784099159538	0.734764033806027	0.00636658724074849	0.0566813399886475
Merged-chr7-98799871-3	chr7	98799769	98799969	+	819.600037	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-35243.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	3.36864646511773	3.4082891823083	3.86502554708984	3.52017384928668	3.63237182472396	3.42025664639625	3.52496338498892	3.24066136854565	-0.276033239904823	0.604041505596209	0.828350269166784
Merged-chr9-100456491-4	chr9	100456382	100456582	+	902.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	29991.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	5.23177218884874	5.34997042946498	5.23269819138237	4.75887041001378	4.52927222804902	4.66421112558641	4.64038785703882	4.21296997886044	-1.30641991991297	0.00057683518714773	0.00865848835638723
Merged-chr12-8947862-4	chr12	8947789	8947989	+	893.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010770)	promoter-TSS (NM_010770)	-40.0	NM_010770	17182.0	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	4.8686972942454	4.52113674296347	4.76354594438148	4.70093551108642	4.69265703316994	4.82159570401377	4.84591607354752	4.56175906645345	0.038060025627022	0.911603333036407	0.966971601135236
Merged-chr3-21935665-4	chr3	21935548	21935748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141004.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.1703333840751	5.34106388325384	5.20513277382128	5.21790529004558	5.54214115389433	5.27892911606223	5.71341490446336	5.60030321729538	0.547800649641043	0.0520492309065374	0.237535047551672
Merged-chr16-44989267-4	chr16	44989159	44989359	+	751.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45581.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	4.28592612710127	4.0668636493997	4.36874652312483	4.47549160498833	3.61636941816293	4.12758348244277	4.18011700649371	4.32553364548667	-0.588405112546189	0.195269696879491	0.496044870624791
Merged-chr1-59475789-4	chr1	59475679	59475879	+	915.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6368.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	4.84257822887814	4.39232551204582	4.26793297979138	4.77224799339262	4.99293066982052	4.54510974933088	4.60591585459156	4.50115056357711	0.189861539710551	0.629936000692341	0.842536537521168
Merged-chr15-101237032-3	chr15	101236929	101237129	+	884.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11843.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	4.12398419929667	3.83398494801832	3.54905634150566	3.61013507419012	3.79828564447621	3.78334859977585	3.65043851128303	3.66273489945412	-0.187893175003711	0.698385329336605	0.878337150272992
Merged-chr18-46280737-4	chr18	46280637	46280837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172627, exon 1 of 9)	exon (NM_172627, exon 1 of 9)	113.0	NM_172627	225467.0	Mm.262096	NM_172627	ENSMUSG00000024477	Pggt1b	2010207C17Rik|2610100E13|AI451237|AI551093|BGG1|GGT1	protein geranylgeranyltransferase type I, beta subunit	protein-coding	6.02129407106809	5.94067311911795	6.37343607913368	5.9357776908152	5.61549373051948	6.25945797228317	5.85742582313777	5.99655588312451	-0.20588693475619	0.450364834982155	0.735291845521361
Merged-chr12-40310091-3	chr12	40309987	40310187	+	973.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	86723.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	4.58864242102505	4.60432318338956	5.10749261932742	4.28614554325249	3.97380595491831	4.42407432338995	4.17667607689519	4.14012146999879	-1.15288214872385	0.00803027442757905	0.067372336572448
Merged-chr19-16128928-4	chr19	16128822	16129022	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3909.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	5.02579143718244	5.42272104048817	4.9895769511585	4.95803387579066	5.29751393117471	5.40291773196989	5.23373548819714	5.50381506443429	0.463797344678532	0.129976867431698	0.401334945198567
Merged-chr3-52262659-4	chr3	52262534	52262734	+	824.325012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5703.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	4.18003247646484	4.38611431365698	4.1314407473305	4.24827995383835	4.37388273261461	4.53073680834955	4.38168418192123	4.17816166060596	0.306839210212761	0.426585177185799	0.718009561042068
Merged-chr15-11716324-4	chr15	11716192	11716392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	189382.0	NM_008728	18162.0	Mm.25259	NM_008728	ENSMUSG00000022206	Npr3	ANP-C|ANPR-C|EF-2|NPR-C|lgj|stri	natriuretic peptide receptor 3	protein-coding	7.64167734712572	7.91899845473552	7.97898384772692	8.14922665377819	7.86286046333074	7.63163814230345	7.86494054952411	7.73838934408738	-0.212267090555346	0.248175634254187	0.559263391077653
Merged-chr7-28380297-4	chr7	28380206	28380406	+	930.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1078.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	4.81286951743524	4.15194349279064	4.41767035135595	4.86944710289365	4.60364431557669	4.76420971582046	4.72099530443111	4.62793259317581	0.146681977605109	0.708524468823246	0.882900028609472
Merged-chr8-70619030-4	chr8	70618921	70619121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153074, intron 2 of 2)	intron (NM_153074, intron 2 of 2)	2177.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	8.78794832378532	8.86732258654679	8.87179225088733	8.83047185658783	8.72263724404886	8.81156103974807	8.66157236979489	8.78782691862991	-0.116954328963595	0.401765551318386	0.69931944776102
Merged-chr11-29172245-2	chr11	29172181	29172381	+	942.5	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_134034)	promoter-TSS (NM_134034)	-626.0	NM_134034	104570.0	Mm.276386	NM_134034	ENSMUSG00000020463	Ppp4r3b	AW011752|AW557776|Smek2|mKIAA1387	protein phosphatase 4 regulatory subunit 3B	protein-coding	4.56339400405341	4.57242190581185	4.52297406940441	4.67568645807035	4.26553407857847	4.73639660522415	4.69400145215858	4.56118009445986	-0.0584490511286823	0.873460352482815	0.952619493264257
Merged-chr15-78582042-4	chr15	78581933	78582133	+	921.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155437)	promoter-TSS (NR_155437)	-444.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	4.13112003769407	3.92281892453049	3.93695770283216	3.94675711429052	4.34198661800884	4.0594263254496	3.97194008609817	4.29784528596202	0.525936361529761	0.206251285710388	0.510210725476936
Merged-chr15-64242148-3	chr15	64242045	64242245	+	907.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	70528.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	3.9575842903315	3.48802787885752	3.44003120008224	3.62719700133145	3.59223313627303	3.84456629587292	3.70947162260096	3.82116721160864	0.302504367137632	0.534602405876056	0.789286995820758
Merged-chr15-25531114-4	chr15	25531008	25531208	+	994.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91442.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	5.69251892387881	5.63517944460957	5.74147455124697	5.31002855364141	5.74686574715936	6.00467545590079	5.42460898292369	5.11297587219339	0.0384071519258016	0.904068690235395	0.964516711899835
Merged-chr5-30013065-8	chr5	30012969	30013169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031168)	promoter-TSS (NM_031168)	-45.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	5.71157609313952	6.30074316058458	6.06131498575883	5.28309611307137	6.45894242574926	6.94907289468062	6.24864430640402	6.29482661629261	0.957299177671148	0.0023858600037449	0.0267559661096146
Merged-chr12-84996286-4	chr12	84996201	84996401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178363)	promoter-TSS (NM_178363)	-20.0	NM_001347421	56531.0	Mm.153183	NM_178363	ENSMUSG00000021244	Ylpm1	A930013E17Rik|ZAP|Zap3	YLP motif containing 1	protein-coding	6.57853497560513	6.65605383195326	6.02852370954063	6.41398189141753	6.52350663397798	6.38351065787598	6.60589749457662	6.39320482336602	0.0581740401465828	0.805052040255068	0.925171083261684
Merged-chr5-45450388-4	chr5	45450305	45450505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024236)	promoter-TSS (NM_024236)	-176.0	NM_024236	110391.0	Mm.30204	NM_024236	ENSMUSG00000015806	Qdpr	2610008L04Rik|D5Ertd371e|Dhpr|PKU2	quinoid dihydropteridine reductase	protein-coding	9.57714103897522	9.61719593522164	9.69226134268546	9.5345447072317	9.69249221078695	9.93352690403401	9.72887419350592	9.6158650009862	0.173465147936961	0.218646423331165	0.525920308403926
Merged-chr3-87885747-4	chr3	87885643	87885843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033573)	promoter-TSS (NM_033573)	-181.0	NM_033573	94315.0	Mm.35089	NM_033573	ENSMUSG00000004895	Prcc	-	papillary renal cell carcinoma (translocation-associated)	protein-coding	8.85601980655808	8.98393365585095	8.80308017497749	8.59687919687777	8.60657625260122	8.56025967577606	8.57109267554683	8.64146161767359	-0.272049947423438	0.081354108460401	0.309448195698332
Merged-chr12-26311719-1	chr12	26311619	26311819	+	634.666687	f0_balb.idr	intron (NM_080563, intron 8 of 8)	intron (NM_080563, intron 8 of 8)	-34991.0	NR_130981	75243.0	Mm.444753	NR_130981	ENSMUSG00000114048	4930549C15Rik	-	RIKEN cDNA 4930549C15 gene	ncRNA	3.44528870163892	3.31829442687855	3.39154191778876	3.39773309539313	3.19565235597282	3.44806414682027	3.43188226605727	3.33319981283261	-0.138182738540077	0.788680482218066	0.91812687233996
Merged-chr17-84408892-4	chr17	84408773	84408973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 22 of 37)	intron (NM_183021, intron 22 of 37)	57335.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	5.21355676421837	5.48097033810785	4.61136358418373	4.78246072480071	5.39491459063253	5.29175509157915	5.66285665680489	5.68817091718402	0.822647803586121	0.0180986328740702	0.119669539186571
Merged-chr2-120666766-3	chr2	120666664	120666864	+	879.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57169.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	3.37264642426204	3.95298665148551	3.43446366585231	2.99566829337952	3.97982021570096	3.87580761721367	3.29719466149915	3.16929281491534	0.414355571045918	0.517627159847207	0.778953152798512
Merged-chr13-119596955-4	chr13	119596831	119597031	+	913.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-26888.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	3.97408690823525	3.71991389067325	4.23794709777706	3.07562943388463	4.01710530717867	3.88839400807334	4.00412304581328	4.31181070846745	0.639603695037311	0.25308586780998	0.564378551484901
Merged-chr8-95852497-4	chr8	95852386	95852586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172758, intron 2 of 11)	intron (NM_172758, intron 2 of 11)	1005.0	NM_172758	234595.0	Mm.29267	NM_172758	ENSMUSG00000036534	Slc38a7	D430050E18	solute carrier family 38, member 7	protein-coding	8.23456246773178	8.46963782714308	8.13912180478832	8.2059547138747	8.22291887947415	8.11960856267508	8.22581323651236	8.25923935502049	-0.0758851322087206	0.635825285402925	0.845885426792793
Merged-chr13-80885635-4	chr13	80885542	80885742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153411)	promoter-TSS (NR_153411)	-453.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	8.38371837851589	8.26288845386202	8.07182331777777	8.29707379585173	8.34871784167187	8.41298553482567	8.31428179153804	8.40033385610885	0.137085303187744	0.375622304826303	0.678579934364767
Merged-chr7-98362257-4	chr7	98362125	98362325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168539)	promoter-TSS (NM_001168539)	-897.0	NM_001168539	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	6.19092770818235	6.05720234821174	5.95524655300522	5.82352291182592	5.96012337185723	5.94443243926333	5.71373920130974	5.41993791139024	-0.352754501731308	0.192436602622004	0.492058948091807
Merged-chr13-59557382-4	chr13	59557287	59557487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284218)	promoter-TSS (NM_001284218)	-40.0	NM_023328	67269.0	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	6.70667615717873	6.5695786791045	6.62803250433455	6.56720467981181	7.35728302194677	6.98897501577005	7.21544266811932	7.17454319113744	0.815613505856652	3.07169251516781e-05	0.000741907029308209
Merged-chr15-66899890-4	chr15	66899807	66900007	+	731.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018865, intron 1 of 4)	intron (NM_018865, intron 1 of 4)	8514.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	3.33313315428067	3.39813315797266	3.51791855109814	3.85404870756172	3.85364982858739	3.57378438199832	3.71340619169123	3.72698637261155	0.499004927853436	0.339518015035382	0.648774648981312
Merged-chr9-103202092-4	chr9	103201986	103202186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009275)	promoter-TSS (NM_009275)	-21.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	6.55152580397987	7.207549110219	7.21522521688085	7.02655152375755	6.75876394542801	7.02937467817353	7.03499735368104	7.08901114560556	-0.0699624807013354	0.755700400717809	0.903912059264182
Merged-chr6-86548118-4	chr6	86548000	86548200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037961, intron 3 of 4)	intron (NR_037961, intron 3 of 4)	20699.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	5.42312507225244	5.43838896347245	5.30178755089109	4.70781449202586	6.07382717406259	5.71040481499948	5.45332135819877	5.53173741892769	0.850850123099706	0.0109353217350678	0.0841385002465024
Merged-chr10-13948383-1	chr10	13948283	13948483	+	588.5	f0_balb.idr	Intergenic	Intergenic	-17692.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	3.09960896246066	3.29706145435239	3.22080732958533	3.13764627021305	3.41209285385975	3.20932782381036	3.15071939688797	3.2191412250249	0.262134799885203	0.628464836494303	0.841555695467787
Merged-chr17-47694925-4	chr17	47694847	47695047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290337)	promoter-TSS (NM_001290337)	-211.0	NM_001290337	381104.0	Mm.392206	NM_001290337	ENSMUSG00000096549	Prickle4	Gm939	prickle planar cell polarity protein 4	protein-coding	8.2265342919613	8.25667711994581	8.21042559842107	8.10686959044335	8.03456875909715	8.25853851214431	8.18329405581268	7.89412094079133	-0.12858851377605	0.432640332314859	0.722596762180336
Merged-chr6-122635558-4	chr6	122635489	122635689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9165.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	6.74715936184489	6.80824581787262	6.57499640858185	6.80118851969819	6.87097966874326	6.93973696117928	7.10462967074107	7.20822102972884	0.408319598793675	0.0430701393000613	0.211150178747783
Merged-chr19-55587936-4	chr19	55587850	55588050	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	114254.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	4.75474687338546	4.77685566361251	5.28996253452694	5.20080614333236	4.71357224495661	4.47714756598028	4.73321955656403	4.82829317940568	-0.690789540078245	0.0531997107626198	0.240539703520477
Merged-chr7-122310388-4	chr7	122310293	122310493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	21268.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	6.81758983682007	6.62094061893127	6.69101490145383	6.83884257330213	6.62454637543196	6.74210283810829	6.78415321912766	6.45758119307627	-0.134641631940375	0.515880371573854	0.777831066095903
Merged-chr19-4865335-3	chr19	4865221	4865421	+	799.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013456, exon 12 of 21)	exon (NM_013456, exon 12 of 21)	10192.0	NM_019861	56464.0	Mm.29561	NM_019861	ENSMUSG00000083282	Ctsf	AI481912	cathepsin F	protein-coding	3.71629886380713	3.56489152660301	3.41195112659249	3.66096842309454	3.53839602144464	3.26991179424288	3.28086294958389	3.35157854837669	-0.75883872647212	0.147499828943968	0.428647287497111
Merged-chr7-98953830-4	chr7	98953720	98953920	+	910.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 12 of 14)	intron (NM_178635, intron 12 of 14)	114975.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	4.69313728731625	5.01223697075261	4.95743658546776	5.53493925296172	4.51143754583051	4.54938545716865	4.79064244420008	5.02025923986028	-0.755445629855405	0.0506803483492123	0.23339651366127
Merged-chr10-75677044-4	chr10	75676948	75677148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 29 of 36)	intron (NM_172549, intron 29 of 36)	-33040.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	6.77171478341888	6.76759659161229	6.51291618725796	6.84685842754082	6.4162862323544	6.67260941137924	6.47966463362586	6.63725558297266	-0.275467776803397	0.194001494837126	0.49433215631272
Merged-chr8-46000001-4	chr8	45999905	46000105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039562)	promoter-TSS (NM_001039562)	-155.0	NM_001039562	654824.0	Mm.334517	NM_001039562	ENSMUSG00000050914	Ankrd37	-	ankyrin repeat domain 37	protein-coding	8.4867223168542	8.53817443477483	8.55587909482121	8.76204274876945	8.46977685985765	8.40668990081963	8.7398449108054	8.28342449893186	-0.136706237290027	0.42056909746367	0.713388099239967
Merged-chr2-101628441-2	chr2	101628339	101628539	+	840.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_009020, intron 2 of 2)	intron (NM_009020, intron 2 of 2)	547.0	NM_026592	68170.0	Mm.31263	NM_026592	ENSMUSG00000027165	B230118H07Rik	NWC	RIKEN cDNA B230118H07 gene	protein-coding	3.94688000127996	3.79662798138888	3.66632824592436	4.01214381843914	4.24773708336185	4.06999942715956	4.2788803290407	4.08855248890931	0.797849766528198	0.0647810691014005	0.270681051809133
Merged-chr12-59133209-2	chr12	59133109	59133309	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165253, intron 1 of 22)	B3A|SINE|B2	1756.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	3.36112521529002	3.40125390308492	3.53299088971971	3.27646004224028	3.65240887290184	3.80338987330595	3.34952790191695	3.5309876948586	0.686396517382083	0.172884740381791	0.466622286350504
Merged-chr17-28694889-4	chr17	28694782	28694982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	2314.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	6.32719413439321	6.55252208346024	6.09594550039623	5.84329351128541	6.43872866152439	6.50331142310184	6.06470638855602	5.75305734167819	0.00655864250470543	0.982054095740032	0.993573193675204
Merged-chr18-84854073-4	chr18	84853919	84854119	+	858.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348159, intron 1 of 5)	intron (NM_001348159, intron 1 of 5)	2681.0	NM_001348159	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	3.67560323712206	3.7420610580555	3.72599575571005	3.6631187501007	3.63287720146876	3.68668967394571	3.18076693619458	3.62219937471965	-0.48489125726339	0.339621693117992	0.648807871774486
Merged-chr11-75534511-3	chr11	75534372	75534572	+	867.714294	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	2360.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	3.05257541568064	2.78832680807076	2.88234596281515	2.88146585001716	2.83109637649247	2.6390847048439	2.93069729012618	2.8809123068968	-0.344047782993586	0.582023514526382	0.816501953640427
Merged-chr11-4218163-4	chr11	4218063	4218263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028022)	promoter-TSS (NM_028022)	-88.0	NM_028022	71962.0	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik|Castor1	GATS protein-like 3	protein-coding	6.03846330415556	6.08229407141322	5.64322774941588	6.02433633005321	5.65157101250529	5.84689960142181	5.47121937432014	5.90920268307192	-0.38697254385861	0.147272490988721	0.428197730324994
Merged-chr16-20424318-4	chr16	20424191	20424391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176839, intron 1 of 6)	intron (NM_176839, intron 1 of 6)	2103.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	6.13479265824858	6.32272261084686	6.03227072391145	6.04087614745517	6.16840351751776	6.14183098402709	6.00149655881286	5.81723074425381	-0.139003299100351	0.566626589715319	0.807951645949796
Merged-chr13-58214872-4	chr13	58214786	58214986	+	912.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026842, intron 1 of 10)	intron (NM_026842, intron 1 of 10)	767.0	NM_152234	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	4.18566360743734	4.09932298275635	3.86934637257571	4.21447442175745	4.81301396479915	4.26464365632101	4.07171039277681	4.35874355525614	0.758649414773788	0.0815280397276815	0.309798073362916
Merged-chr10-118868613-2	chr10	118868500	118868700	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001014390, intron 1 of 2)	CpG-1533	303.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	6.00632433090729	6.31219712767884	6.03008935086623	5.63514220340356	6.44034622249598	6.98344057328841	6.34863964770653	5.83203386048762	0.683603504765869	0.0268741358652907	0.155822264317003
Merged-chr2-49393566-2	chr2	49393463	49393663	+	564.166626	f0_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-57923.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	3.52092672790159	3.41775278964339	3.65750827927147	3.24539838503321	3.04681314627776	3.17735862810615	3.05600355927813	2.9946744523207	-1.54258662086346	0.00872609151042143	0.0715240059442984
Merged-chr11-113165351-2	chr11	113165304	113165504	+	830.5	f0_c57.idr|f1_balb.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	36434.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	2.70910539523111	2.49875362285936	2.47826951706403	2.42998132481381	3.07755105230859	2.95735895596205	3.06611858848761	3.27661792671704	2.81106167198575	2.45648021564362e-05	0.000609657619488484
Merged-chr2-49424997-4	chr2	49424905	49425105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26481.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	6.17422520183814	6.57063703673158	6.61736477793956	6.97922149078134	6.6750998252012	6.68023326757364	6.61414698804724	6.56516502119325	-0.0035520738463611	0.988405676903151	0.995445808115911
Merged-chr7-127822849-2	chr7	127822749	127822949	+	640.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_024414, intron 1 of 9)	MIRb|SINE|MIR	1682.0	NM_024414	56216.0	Mm.439759	NM_024414	ENSMUSG00000030806	Stx1b	Stx1b2|Stx1bl|Syn1b	syntaxin 1B	protein-coding	3.46457497939163	3.61192653482042	3.04304365598158	3.09991675419786	3.32375837850861	3.35361413522218	3.39861234446126	3.29873240500596	0.0760663177840978	0.892408948373497	0.959702310634513
Merged-chr14-70577715-4	chr14	70577622	70577822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360475)	promoter-TSS (NM_001360475)	-102.0	NM_153136	213484.0	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	9.11371398460132	9.25929287654187	9.05834934977176	9.34217541678687	8.89944860656267	9.04441090982476	9.12917500860796	8.92739479110124	-0.249493601141598	0.0973287045536546	0.341855126030444
Merged-chr19-40666025-4	chr19	40665933	40666133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	6263.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	5.95155505719975	6.31043068854024	6.32378735057624	6.55185399650701	6.10706497384644	6.08215640850851	6.29140883865212	6.26453989846223	-0.200238495871199	0.415725724793624	0.709886482687489
Merged-chr1-190927945-4	chr1	190927845	190928045	+	972.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357131)	promoter-TSS (NM_001357131)	-545.0	NM_001357132	52477.0	Mm.289914	NM_021421	ENSMUSG00000026634	Angel2	2610307I21Rik|5730410O10Rik|AI845692|D1Ertd396e|D1Ertd654e	angel homolog 2	protein-coding	5.35295274391598	5.25096330328249	5.23724783087151	5.76023363317061	4.68961671393108	4.9867219983217	5.18053839673686	4.99983096726606	-0.882141443300574	0.00805647073535018	0.0675443498788563
Merged-chr7-122415605-4	chr7	122415497	122415697	+	939.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	126472.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	4.68239464801062	4.8514203667116	4.98462535318191	5.0408967302901	4.71711924362265	5.21984360057889	4.74287677266479	5.25068062947276	0.184220079364832	0.599756392873193	0.826560500894977
Merged-chr7-64061340-4	chr7	64061260	64061460	+	948.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92475.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	5.2378388821864	5.37739109236071	4.87856984777158	4.95915836980252	5.22697387144486	5.01659154784716	4.60852889334471	4.75671043339696	-0.365386247255943	0.304304981465014	0.616977638512856
Merged-chr3-96172475-4	chr3	96172405	96172605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153053)	promoter-TSS (NM_153053)	-1.0	NM_153053	107701.0	Mm.219671	NM_153053	ENSMUSG00000068856	Sf3b4	SF3b49|SF3b50|Sap49	splicing factor 3b, subunit 4	protein-coding	6.7122255213377	6.5057458079317	6.44829110628975	6.70554090711419	6.93850599195908	7.13276753521851	6.87187004739044	6.83631883684423	0.483501288186257	0.0187665390567531	0.122661476907312
Merged-chr18-32394554-4	chr18	32394433	32394633	+	970.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	LTR16B|LTR|ERVL	-16249.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	4.35705590510055	4.56036603030307	4.4391231334936	4.37872966888131	4.21798529992958	4.03370586901491	4.41844329876243	3.96619070025794	-0.632892188634007	0.116540028659757	0.37767267801734
Merged-chr4-144892373-4	chr4	144892286	144892486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172424)	promoter-TSS (NM_001172424)	-441.0	NM_001172424	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	7.25165353878844	7.58551392202035	7.57813708407885	7.7025282401901	7.81434604716548	7.72840911687225	7.90914943048317	7.70847992518471	0.319437623067672	0.0790665337270192	0.304258896261853
Merged-chr3-101600051-1	chr3	101599951	101600151	+	860.0	f0_c57.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	4656.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	3.97126610051587	3.87295035824343	4.12753193875587	3.97941818305824	4.55163295609031	4.30274434822341	4.58806361699186	4.34893475299407	1.15834882346079	0.00319059170425712	0.0334960364184834
Merged-chr19-6489226-3	chr19	6489135	6489335	+	862.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 12 of 22)	intron (NM_001205234, intron 12 of 22)	53835.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	3.23261375899773	3.31002681494216	3.04484599240025	3.23780577679193	3.02884303562712	3.51245048354392	3.27729425962159	3.23133845546005	0.203748909443004	0.715609446372595	0.886328547107336
Merged-chr7-74497401-4	chr7	74497284	74497484	+	979.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038643, intron 2 of 10)	ORR1E|LTR|ERVL-MaLR	57396.0	NM_023908	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	5.03692441041467	5.01674223285079	5.75115885298822	5.51838521997464	5.88459448613094	5.25866368000404	5.60323112669523	5.91669037910826	0.551551986121071	0.0996449308194798	0.346218223703981
Merged-chr17-24720491-1	chr17	24720391	24720591	+	1000.0	f1_balb.idr	promoter-TSS (NR_027900)	promoter-TSS (NR_027900)	-298.0	NR_002897	104366.0	Mm.157452	NR_002897	ENSMUSG00000077709	Snora64	MBI-29|Rnu64	small nucleolar RNA, H/ACA box 64	snoRNA	4.46385609370224	4.47779651129888	4.46457720802073	3.70316569892887	4.45071632082957	4.63757497076617	4.48388601338803	4.54146849420295	0.520396967676691	0.231121989167357	0.540647495139858
Merged-chr10-53597391-2	chr10	53597291	53597491	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025541, intron 1 of 3)	CpG	430.0	NM_025541	66403.0	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	4.80514887192108	4.84925329499094	4.84006769485269	4.58301882364404	4.4831171155639	4.66742543839157	4.55726355373538	4.57513353529195	-0.424550806831177	0.2255577859688	0.533992493498344
Merged-chr7-122217719-1	chr7	122217619	122217819	+	678.5	f0_balb.idr	Intergenic	Intergenic	-1777.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	3.57556222355787	3.29432142395734	3.62815919679782	3.57225722844312	3.61527990551544	3.79656473841128	3.33262468404962	3.57404667970717	0.207830251795278	0.681112087634611	0.869128866204334
Merged-chr2-160452166-4	chr2	160452081	160452281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85116.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	5.6094433205977	5.52795353177842	5.68559865664471	5.80598506260583	5.4750996500716	5.32897785034357	5.74983007979731	5.34998628989616	-0.310532180728029	0.264380345019762	0.576455127446606
Merged-chr1-151264978-3	chr1	151264881	151265081	+	969.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79505.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	4.71975963040488	4.56013954447525	4.31289054403134	4.469242158754	4.0900216997614	3.83698912178624	4.33599630537641	4.0173052264967	-1.07477704309769	0.0102936273438342	0.0806394563841924
Merged-chr1-178342249-4	chr1	178342156	178342356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4441.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	6.26128980996031	6.30411774172619	5.99312941802929	6.33621424854439	6.38456461438096	6.1702114822217	6.23036432810407	6.05621730104073	-0.0242025191109534	0.917888420617089	0.969760089182615
Merged-chr11-107322931-4	chr11	107322838	107323038	+	953.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-133557.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	4.74093243512094	4.62641297593693	4.158820775327	4.3217964541551	4.98216731399132	4.76220101325866	4.56712044938609	4.77407963847021	0.674578680390498	0.0724519533268737	0.289332225418175
Merged-chr5-67260678-4	chr5	67260574	67260774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028975, exon 1 of 8)	5' UTR (NM_028975, exon 1 of 8)	109.0	NM_030108	67878.0	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	7.65585885697564	7.88761025209488	7.6571513912518	7.69913723637125	7.82002982422944	7.96523865960569	7.89593727709648	7.83573615136435	0.193603707102243	0.240370487510259	0.550870712287303
Merged-chr11-100841016-4	chr11	100840885	100841085	+	687.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	9600.0	NM_001113563	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	3.14603947125498	3.20657566244695	3.01060583526662	3.12257643549679	3.5130609556882	3.25885240854155	3.25741867803636	3.7512921751024	1.21457645303471	0.0270567516688202	0.156460518891458
Merged-chr18-75259273-4	chr18	75259178	75259378	+	943.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 16 of 16)	intron (NM_027727, intron 16 of 16)	38039.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	4.62610697159182	4.25785954941353	5.579254398401	5.60220060968899	4.54286079017739	4.3068321475532	4.42333768166235	4.78482346936286	-1.25401779063011	0.00836791024807074	0.0692822477082037
Merged-chr12-100471477-3	chr12	100471327	100471527	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 3 of 19)	L1MEc|LINE|L1	49395.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	3.68480837726443	3.39413472700721	4.09693536633359	4.44168502812284	3.68880893395046	3.56768260535861	3.3048815238088	3.4482535798894	-1.38494983047344	0.0180350661958554	0.11931573350263
Merged-chr8-13214093-4	chr8	13213988	13214188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13464.0	NM_025768	66790.0	Mm.34901	NM_025768	ENSMUSG00000038515	Grtp1	5430401C05Rik|C81211|Tbc1d6	GH regulated TBC protein 1	protein-coding	5.14848043720556	5.28829275111634	5.14934502845165	5.24687902894985	5.28424564397013	5.47950035065393	5.18907141971626	5.33224387040712	0.19448460652488	0.498414455255606	0.767626850238851
Merged-chr6-72023829-3	chr6	72023745	72023945	+	808.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046180, intron 1 of 2)	intron (NR_046180, intron 1 of 2)	18683.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	3.36212817237991	3.49424111089427	3.58862432634862	3.10039705042039	3.91950456438209	3.75893463084757	3.28818387034636	3.42099120079637	0.771139942011923	0.162273446872205	0.451435886782433
Merged-chr9-66939041-4	chr9	66938941	66939141	+	933.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7045.0	NM_001311101	67941.0	Mm.30120	NM_026467	ENSMUSG00000036781	Rps27l	1810034D23Rik	ribosomal protein S27-like	protein-coding	4.59050054525061	4.92658065082191	4.59120849275132	4.5928974454381	4.93770171458183	4.58719698066817	4.87084844572153	5.0477359684832	0.407133333594576	0.240590997818509	0.551185699479073
Merged-chr5-90771545-4	chr5	90771452	90771652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019932)	promoter-TSS (NM_019932)	-883.0	NM_019932	56744.0	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	6.03866167382983	5.43928354766695	6.03973024399399	6.29085103788009	5.93593976715237	5.85689655486506	6.16532049178402	6.15518592820779	0.0513706939264243	0.857439488608102	0.946298254907789
Merged-chr18-65502978-4	chr18	65502866	65503066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	RLTR19-int|LTR|ERVK	71969.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	6.53485721220678	6.92470415430623	7.11307159641326	6.92173371304825	5.8184161163039	5.77475020600505	6.07168418714169	6.09875707899875	-1.4097781907673	5.24427703750438e-09	2.93691892409539e-07
Merged-chr16-76429611-3	chr16	76429506	76429706	+	868.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55779.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	3.1021933217084	3.19769388719671	3.56287989179447	2.99148014450153	3.1960961466837	3.08315643489415	2.96416152049588	3.03811287612056	-0.577515646162384	0.336504827297119	0.646470196956367
Merged-chr8-105500081-4	chr8	105499965	105500165	+	933.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-3163.0	NM_175160	70796.0	Mm.100917	NM_175160	ENSMUSG00000039199	Zdhhc1	4432412D04Rik|DHHC-1	zinc finger, DHHC domain containing 1	protein-coding	4.66894609831182	4.36181305398821	4.14424109010328	4.52991418819956	4.63102702518754	4.56346857430592	4.57420672113548	4.47324807463109	0.264161810474082	0.479849165623276	0.755545364772357
Merged-chr12-12269330-4	chr12	12269227	12269427	+	880.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	7188.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	4.6870982719196	5.45441839999011	4.59967537597503	4.0685847664521	5.44353998533739	5.43599489762792	4.66567320481807	4.68476370719785	0.586533391826199	0.212672301976486	0.517670706102327
Merged-chr11-113752476-4	chr11	113752381	113752581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163346)	promoter-TSS (NM_001163346)	-666.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	5.96430879649123	6.41874211784739	5.92053512525987	5.64638109468759	6.17121989144344	5.67319740764829	5.79677458490107	6.12574702555938	-0.0725502842176071	0.805490729825827	0.925182413943856
Merged-chr13-58158745-4	chr13	58158653	58158853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198004, intron 1 of 4)	B3|SINE|B2	1104.0	NM_198004	75731.0	Mm.293919	NM_198004	ENSMUSG00000050002	Idnk	5133401N09Rik	idnK gluconokinase homolog (E. coli)	protein-coding	5.42820070895208	5.55425760662612	5.16810296463086	5.47307073820412	6.02741525333907	5.74290179090188	5.3723986474358	5.48303770719817	0.467808819587311	0.119554446814371	0.382582591257021
Merged-chr2-145822143-4	chr2	145822048	145822248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	36032.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	8.13170874128699	8.39213711578727	8.24820753967201	8.15648564372897	8.22129485870083	8.48253885075373	8.26033439257934	8.21941429627176	0.0799400757565935	0.621970693850066	0.838130618172061
Merged-chr10-127620357-6	chr10	127620296	127620496	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	752.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	4.5266003583437	4.21530816682672	4.88301469554593	4.60778047894358	3.96337349626908	4.61796486194812	4.82743018685339	4.43965648869789	-0.185409968326689	0.669529063712935	0.863559765629381
Merged-chr5-3198578-4	chr5	3198469	3198669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-145324.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	7.3126892292356	7.24848809605502	7.79639091486116	7.62153425012862	7.40002523729367	7.10089160075432	7.44404448231726	7.16417493170402	-0.30307404704579	0.146895375918963	0.427572829088733
Merged-chr2-124671684-4	chr2	124671598	124671798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	18117.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	5.41648757393815	5.19237053031064	5.67291881661037	5.53201741872832	4.98197685864319	5.37861790024662	5.64392419476938	5.198246583857	-0.268999340636986	0.394455437098668	0.693617519139457
Merged-chr6-72789377-8	chr6	72789216	72789416	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009332)	promoter-TSS (NM_009332)	-271.0	NM_009332	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	4.73186442742621	4.56059180388067	4.43412349393307	4.61016327516086	4.78973599362086	4.70373640495428	5.06865356080341	4.97109307303602	0.624502185404818	0.0672804110366615	0.276754067104631
Merged-chr11-23987935-4	chr11	23987870	23988070	+	934.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90086.0	NM_016707	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	4.473744558357	4.61942594139205	4.64670274945629	5.05274374028617	4.95999801721316	4.4586084966097	4.58470837316211	4.9624505758607	0.0651069524661406	0.866232966993423	0.949874431032359
Merged-chr10-117216264-4	chr10	117216180	117216380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026570, intron 6 of 6)	intron (NM_026570, intron 6 of 6)	8227.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	6.85768864963079	6.58714693401269	6.68383321790544	7.12634333927287	6.89806525478432	6.62224994683811	7.29318168657475	6.90731520347549	0.154607623149764	0.518583864357087	0.77962828710077
Merged-chr13-30630185-4	chr13	30630081	30630281	+	765.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15138.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	4.11139988175153	4.26765856031417	4.11198831447998	4.56384659167585	4.57539469907373	4.13139947759927	4.09496503677018	4.29521989818897	0.0109008862095143	0.979738431350157	0.992751214376232
Merged-chr12-99942707-4	chr12	99942608	99942808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028354, intron 14 of 15)	intron (NM_028354, intron 14 of 15)	-21791.0	NM_001164426	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	6.56974633115454	6.54737740766318	6.93365734504454	7.21313533756025	6.4968302136784	6.0621527050375	6.68877226110616	6.39317774930289	-0.611590444133497	0.019159690666267	0.124305014683522
Merged-chr4-33242691-4	chr4	33242603	33242803	+	823.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	6084.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	4.63177549453762	5.29650913987658	4.88470376722173	4.23147330358305	4.70021921752149	4.50078193234684	4.19648492344116	4.54736386077219	-0.670634428792927	0.126222347474717	0.394813696207722
Merged-chr3-81099443-3	chr3	81099343	81099543	+	676.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	RSINE1|SINE|B4	63027.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	3.81264913455547	3.73527305793837	3.56288927259443	3.46880145104498	3.54213588511941	3.56239877889238	3.54907639758383	3.61501258200989	-0.243134004419138	0.61720274175228	0.83539731412462
Merged-chr14-50062348-5	chr14	50062275	50062475	+	978.2999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	22304.0	NM_146316	258313.0	Mm.463727	NM_146316	ENSMUSG00000060523	Olfr726	MOR246-4	olfactory receptor 726	protein-coding	3.71984406818741	3.64352754695782	3.72035478199973	3.04765319461109	4.62848559977077	5.07890314783816	5.21656608468549	5.09552550064877	3.94580868571934	4.34950805488512e-17	9.85966986747351e-15
Merged-chr9-114789804-3	chr9	114789731	114789931	+	585.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 3 of 3)	intron (NM_027294, intron 3 of 3)	-7838.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	3.38726712933702	3.36939996759061	3.44393319837874	3.71864245129977	3.37401437369127	3.50092737938505	3.53480849471288	3.20145988251355	-0.3169655811663	0.550474826664397	0.798632172919405
Merged-chr14-13361838-4	chr14	13361755	13361955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028052, intron 2 of 5)	intron (NM_028052, intron 2 of 5)	77075.0	NM_028052	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	8.1478667756007	8.15678313087771	8.33945453867536	8.38390797370211	8.12766831373602	8.16763238692569	8.34754097750617	8.11865188261956	-0.0935865432224237	0.562881076001952	0.805927740950101
Merged-chr4-99200889-2	chr4	99200783	99200983	+	920.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175029, intron 1 of 10)	MTD|LTR|ERVL-MaLR	6736.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	3.13578712259793	3.042806930849	3.13613537063969	3.12325999591156	4.03226154760003	3.5600225976464	3.42797884402845	3.44024383117538	1.86050700489606	0.00074518665383451	0.0106402489133975
Merged-chr17-23739560-4	chr17	23739474	23739674	+	886.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023824, intron 1 of 2)	intron (NM_023824, intron 1 of 2)	756.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	3.5929421362939	3.71344533758169	4.00341492256779	3.63449687465125	4.00222215180708	3.82773829450885	3.98533018982639	3.76059503249557	0.47625072528242	0.296589575099918	0.608522308921674
Merged-chr10-20505655-4	chr10	20505567	20505767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	42661.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	7.39319926498091	7.60593299174395	7.64068870850116	7.6600907854719	7.08905209037579	7.02041200470226	7.02689077444085	7.03192508250118	-0.728247774720089	5.18998596066315e-05	0.00116830490415573
Merged-chr3-52031474-3	chr3	52031382	52031582	+	766.483337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	73524.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	3.59982915866815	3.46301199759346	3.43747408443012	3.47437651163665	3.41934251931309	3.71748833045267	3.53403820458234	3.43568747469405	0.111439619804879	0.820935337601642	0.931443689364036
Merged-chr18-39138019-4	chr18	39137923	39138123	+	912.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 10 of 21)	intron (NM_001361073, intron 10 of 21)	144878.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	4.56970186701102	4.40702469912499	5.23458493002084	4.73636289403979	4.35508047531337	4.38668048528782	4.33482215250709	4.09315658069805	-1.06630044574335	0.0100733924249935	0.079342038222708
Merged-chr13-49058699-4	chr13	49058599	49058799	+	684.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 21 of 29)	intron (NM_001290313, intron 21 of 29)	89629.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	3.69832070522724	3.50959563657781	3.69886668273508	3.36413551404877	3.71058718112914	3.41322894149274	3.52872218727635	3.69665859536953	0.113939218197481	0.819502782414492	0.930894367972767
Merged-chr19-45790774-4	chr19	45790678	45790878	+	971.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7225.0	NM_023799	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	5.28503200805691	5.35728312907239	4.5388489345099	4.86101401891503	5.36213278981733	5.57291083289345	5.50169675141472	5.28224600659711	0.704472527659657	0.0377045416911271	0.194124526078317
Merged-chr10-94690558-3	chr10	94690458	94690658	+	636.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029852, intron 1 of 15)	RMER10A|LTR|ERVL	1768.0	NM_029852	77048.0	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	3.59915938041765	3.56533626829478	3.6530108017997	3.86808764154774	3.73610008168277	3.71519083820256	3.41493702802333	3.70213141045017	-0.12048765450629	0.805328304332624	0.925171083261684
Merged-chr18-80934046-4	chr18	80933950	80934150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201569)	promoter-TSS (NM_001201569)	8.0	NM_001201569	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	7.57124607339908	7.56567312562064	7.31125955995802	7.07640055310251	7.58049114455054	7.81751918367287	7.56961504182982	7.48618508076445	0.306817358448793	0.12627250030262	0.394866457211149
Merged-chr11-69390586-4	chr11	69390466	69390666	+	855.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4780.0	NM_001045525	327951.0	Mm.415669	NM_001045525	ENSMUSG00000044795	Cyb5d1	Gm740	cytochrome b5 domain containing 1	protein-coding	3.79852065508946	4.01836427832949	4.10821335438481	3.8726221654084	4.09458268400353	4.03422110593277	3.72582147816863	4.65343400733252	0.570207908537822	0.226323612658996	0.534914611019215
Merged-chr2-43555763-4	chr2	43555649	43555849	+	890.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289593, intron 1 of 12)	intron (NM_001289593, intron 1 of 12)	424.0	NM_027552	70789.0	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	4.31764248633884	4.14210187334728	4.01615047002836	4.48919950696379	4.7926097546546	4.5346368266489	4.3429195948792	4.35977378508314	0.598418898766878	0.144684536483185	0.423824051291683
Merged-chr19-34607875-4	chr19	34607795	34607995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005858)	promoter-TSS (NM_001005858)	-62.0	NM_001005858	667370.0	Mm.271850	NM_001005858	ENSMUSG00000062488	Ifit3b	I830012O16Rik	interferon-induced protein with tetratricopeptide repeats 3B	protein-coding	6.20694970297159	6.00072920791433	6.0461914395922	5.70233946651116	6.48736959922027	6.63179077101949	5.97200214826569	5.90637274337553	0.473189578864396	0.0942577745756306	0.335878555019715
Merged-chr7-142372159-4	chr7	142372008	142372208	+	915.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347541, intron 1 of 2)	CpG	151.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	3.13330668459159	3.16617008711323	3.45345939294494	3.13877308548664	3.55517657517061	3.83231981158252	3.64694239583447	3.70853200204109	1.56934962575664	0.00210107076369459	0.0242937160313543
Merged-chr15-59823338-3	chr15	59823243	59823443	+	962.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28384.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	3.71751701880753	3.99524048890966	3.87486599304029	4.29963620116289	3.62094342404052	3.45164522184905	3.46374080114565	4.2148886908151	-0.763851566159101	0.159379834039534	0.446897664254482
Merged-chr5-100570833-3	chr5	100570755	100570955	+	648.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139198, intron 1 of 4)	intron (NM_139198, intron 1 of 4)	1350.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	3.55343681454683	3.22035691280457	3.38961508820218	3.18018197545292	3.62312309222077	3.50464026293916	3.48725265788697	3.60218838524	0.773579806384863	0.127786936438733	0.397718218286463
Merged-chr5-120527698-4	chr5	120527598	120527798	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 11 of 13)	intron (NM_001177595, intron 11 of 13)	16506.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	5.32876706147381	5.48902204886846	5.88530612971727	5.66916097631891	5.33083005980348	5.20235709247795	5.17647492432343	4.93960333387664	-0.772565892486542	0.0114852251466498	0.0870786608233436
Merged-chr15-58262263-4	chr15	58262168	58262368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47376.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	7.35420593206272	7.0809754732975	7.11909282158952	7.21014829003173	7.29726919271775	7.3421681049628	7.09512638096016	7.11410445078859	0.0325120970565796	0.862401093149689	0.948130778673016
Merged-chr16-48993734-2	chr16	48993634	48993834	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172616)	promoter-TSS (NM_172616)	378.0	NM_027341	224170.0	Mm.275138	NM_027341	ENSMUSG00000064061	Dzip3	2310047C04Rik|2A-HUB|6430549P11Rik|A230104G20	DAZ interacting protein 3, zinc finger	protein-coding	5.68414277239407	5.67443312726178	6.11001724970056	5.66650148246149	5.46228865229471	5.51759337406254	5.72954097611299	5.60292417936977	-0.351636584319779	0.200776265495717	0.502930308662197
Merged-chr12-16864664-4	chr12	16864555	16864755	+	827.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30323.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	3.86580790224162	3.70413401823313	3.72654633976576	3.42967109843739	3.63270140983302	3.50605999758628	3.80437089312784	3.25573408274135	-0.361664238820597	0.489016652806649	0.761571656414145
Merged-chr5-113735707-4	chr5	113735616	113735816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001010825)	promoter-TSS (NM_001010825)	-66.0	NM_001010825	231630.0	Mm.21926	NM_001010825	ENSMUSG00000053334	Ficd	D5Ertd40e|Hype	FIC domain containing	protein-coding	8.011872599204	7.81083078762052	7.66457731271721	7.57226973764811	7.86442785000878	7.78969677976609	7.84568659623921	7.81965422779203	0.0837423110785512	0.635793834596046	0.845885426792793
Merged-chr19-56556174-4	chr19	56556047	56556247	+	978.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025811, intron 2 of 10)	intron (NM_025811, intron 2 of 10)	7886.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	4.87291182284083	4.85832039187632	5.18258754203349	5.57178999697195	4.98251325423762	4.93087188265978	5.09502257358003	5.08424460827844	-0.295770335680616	0.398405281706329	0.696656255750376
Merged-chr1-191115076-4	chr1	191114985	191115185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16671.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	5.95155057061807	5.73019316699233	5.61167295189397	6.00005679523482	5.70994775101396	5.81587948062372	5.71513918652279	6.05067142656004	-0.0312363252589132	0.905733302352108	0.964977633673916
Merged-chr3-136322788-4	chr3	136322676	136322876	+	880.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 1 of 16)	intron (NM_001033350, intron 1 of 16)	3290.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	4.57205539404578	4.46017984359199	3.94687241788608	4.1141413932589	4.12750671693449	4.6313664554436	4.23380215171828	4.05450067760361	-0.0374512077663109	0.932058068673487	0.975437323713477
Merged-chr13-112331383-3	chr13	112331248	112331448	+	852.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 5 of 11)	intron (NM_001168403, intron 5 of 11)	42830.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	3.82896086711979	3.86233068252216	4.56488241209233	4.81763412961793	3.40631202052533	3.77777339320976	3.44135872801902	3.65176810775632	-2.2350424096674	6.46497367981831e-05	0.00140424278778086
Merged-chr11-97511530-2	chr11	97511471	97511671	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018873, exon 20 of 20)	3' UTR (NM_018873, exon 20 of 20)	-11231.0	NM_001289118	100141474.0	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	3.09792797257743	3.6714223029282	3.09826448366826	3.13749259549401	3.18400996386333	3.34114750757659	3.33227174134952	3.59783520187355	0.333387006789137	0.56450473145897	0.806796423519025
Merged-chr12-37287866-2	chr12	37287766	37287966	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178767, intron 3 of 12)	ORR1E|LTR|ERVL-MaLR	46227.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	3.86078958378649	3.66730538863064	3.62863032123632	4.27250453651667	3.69910916204786	3.92901541148009	4.46065772177761	4.18708657891623	0.527615036313889	0.309668363438635	0.621833440934041
Merged-chr2-60046215-4	chr2	60046114	60046314	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	79526.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	5.22901448152112	5.5049062930718	5.73272446711158	5.97110163379146	5.59338694252547	5.26613541582901	5.23792610112442	5.55617162773046	-0.387449052608719	0.217329316569043	0.524222556646038
Merged-chr9-92458579-3	chr9	92458464	92458664	+	754.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178711, intron 1 of 8)	intron (NM_178711, intron 1 of 8)	1186.0	NM_178711	235527.0	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding	3.16755965197127	2.94464095321532	3.31618180880634	3.17460098710481	2.50687674444978	2.69028663052755	2.65553811679708	2.99861134880256	-2.12540876233581	0.00350937377123615	0.0361391371039956
Merged-chr5-142319551-3	chr5	142319435	142319635	+	831.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81962.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	3.55704051330319	3.72967632215239	3.38054488696182	3.48818775109086	3.69899822899064	3.72852070752977	3.64825899000744	3.55559241893183	0.369652609457947	0.441302849864707	0.728396857622944
Merged-chr8-111659252-4	chr8	111659176	111659376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011742, intron 2 of 3)	MERVL_2A-int|LTR|ERVL	15833.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	6.72708127516195	6.88189235696765	6.43311756076222	6.42225849927718	6.55051780197972	7.08084356447641	6.88272075043295	6.79446815098793	0.296308446296081	0.203872616334272	0.506932472509507
Merged-chr10-88731812-2	chr10	88731712	88731912	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037166)	promoter-TSS (NM_001037166)	398.0	NM_025859	104303.0	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	4.29360556433926	4.44101208905524	4.75252982499727	4.43074408193478	4.53978119805561	4.6964723857909	4.62100509754588	4.81732785471902	0.402974167097861	0.265580588154285	0.577266946109074
Merged-chr6-13069799-4	chr6	13069719	13069919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027992)	promoter-TSS (NM_027992)	60.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	8.22674314731018	8.04085529107783	8.42997755021671	8.33669238456003	8.45914892081939	8.36360164441059	8.42548021335936	8.16200651211792	0.117468845806677	0.486115123560827	0.759864467233313
Merged-chr10-75860254-4	chr10	75860093	75860293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010798)	promoter-TSS (NM_010798)	57.0	NM_010798	17319.0	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding	7.11434842054253	7.16169555052619	7.31114106862991	6.66893264122388	7.19440469814464	7.29254688517223	7.43434005659598	7.00007567218113	0.229126271020533	0.303994352017503	0.616696040763071
Merged-chr6-38346018-4	chr6	38345892	38346092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 1 of 8)	intron (NM_028864, intron 1 of 8)	8611.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	6.09175907829175	6.68353634272778	5.75964684884278	5.9393290272522	6.34209121039774	6.32975538437332	6.01925765868317	5.8846303624526	-0.00867736737070937	0.976663977171048	0.991669126988102
Merged-chr10-18545943-1	chr10	18545843	18546043	+	724.5	f0_balb.idr	5' UTR (NM_019487, exon 1 of 4)	5' UTR (NM_019487, exon 1 of 4)	133.0	NM_019487	56016.0	Mm.35551	NM_019487	ENSMUSG00000019853	Hebp2	SOUL	heme binding protein 2	protein-coding	3.12846164891496	3.22121244277039	3.34979077631474	3.3907508406787	3.27542208103447	3.1758192973982	2.9261728901394	2.93308229090751	-0.729129812622502	0.217428243000048	0.524336797279455
Merged-chr9-57561940-4	chr9	57561841	57562041	+	947.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022813, intron 1 of 8)	intron (NM_022813, intron 1 of 8)	997.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	4.97306835652941	5.02435849317612	4.89839916731829	5.22946124573564	5.05475965351805	5.5493365922617	4.87527362380548	5.37503085917586	0.33986349929109	0.30902759854492	0.621433931428094
Merged-chr8-127441329-4	chr8	127441244	127441444	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033620, intron 20 of 24)	intron (NM_033620, intron 20 of 24)	141692.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	5.67948412562887	6.04432462085276	5.78169839444941	5.89241354704726	8.34495347335733	8.35213759647151	8.31861323168249	7.97179378287846	3.26661317709459	2.05587051534683e-51	3.65837018529681e-47
Merged-chr12-100429160-3	chr12	100429045	100429245	+	812.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	91677.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	3.9418870171104	4.41563058772739	4.25895613773187	4.48403954675201	3.51581149632991	3.57314884731555	3.92590842730898	3.94014533557224	-1.542412831898	0.00138482722621134	0.017523665268355
Merged-chr16-95861506-3	chr16	95861401	95861601	+	900.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040484, intron 1 of 3)	intron (NR_040484, intron 1 of 3)	37212.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	3.87889767334479	3.80556582882821	3.72996942094221	3.70683966735661	3.70205917556984	3.55040301417736	4.03580177966128	3.72787683166819	-0.0326202399460459	0.944193838315437	0.979954897588816
Merged-chr5-100614275-4	chr5	100614171	100614371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42066.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	7.21652494204688	7.44112698034483	6.90101979055598	6.71625153304629	7.28813959624198	7.40515451653474	7.24432862026805	6.66924319412493	0.120965958703175	0.63144866044895	0.84340478133448
Merged-chr16-94700044-2	chr16	94699944	94700144	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	88625.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	2.32909621602834	2.26927729396798	2.32932124146626	2.18350129673503	2.53462938654588	2.57480137242704	2.58428965133811	2.65197676949417	1.8432602000578	0.00845234089955818	0.069786516030754
Merged-chr11-58224497-4	chr11	58224380	58224580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	9503.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	5.56260066773749	5.7595653533009	5.6183994196158	5.56279630916998	5.95395176724751	5.8199653326856	5.66766247915649	5.71739823467668	0.293572195674261	0.254050022517563	0.565366028860034
Merged-chr1-94582213-4	chr1	94582104	94582304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-215238.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	7.24911606091903	6.66487565771181	7.34210349346505	7.73908018468966	7.08804602587054	7.19614223767878	7.03291137456305	6.89374029449882	-0.3519588070815	0.165368151106138	0.456002323608105
Merged-chr6-97509611-4	chr6	97509516	97509716	+	943.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-21796.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.67628683835004	4.58138178757839	4.93477990639919	4.3060134474644	5.24715448181329	4.5394683956929	5.17708251937184	4.75294931479563	0.701364573276693	0.0690324161281605	0.280828619053914
Merged-chr15-99820108-4	chr15	99820017	99820217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023063)	promoter-TSS (NM_023063)	32.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	5.8827108192909	5.74819143161572	5.41803004539165	5.59934761253718	6.25298346252535	6.16783421594146	6.0240836398501	5.87954782610194	0.682539943254087	0.00815343792090322	0.0680447365191664
Merged-chr10-84917262-4	chr10	84917257	84917457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183172)	promoter-TSS (NM_183172)	-256.0	NM_001013441	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	7.742434424865	7.69178125157145	7.73583763512899	7.6223541139508	7.36612115608949	7.72551799600729	7.66613610519489	7.9279910287929	-0.0208262637966623	0.911541263318817	0.96695373445261
Merged-chr10-34416110-4	chr10	34416008	34416208	+	887.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176968, intron 1 of 11)	RMER6A|LTR|ERVK	2443.0	NM_176968	319638.0	Mm.73467	NM_176968	ENSMUSG00000039480	Nt5dc1	6030401B09Rik|AW987726|Nt5c2l1	5'-nucleotidase domain containing 1	protein-coding	4.43644080843097	3.80612083084595	4.05766638939972	3.76518946073237	4.30561642634644	4.07974403871372	4.08789006075841	4.32006834204444	0.452707676432162	0.312239075028772	0.624153704826808
Merged-chr4-105265248-4	chr4	105265154	105265354	+	868.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107907.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.70488652232655	3.96263094773484	4.17616911075263	3.92491533524428	4.04439699307794	4.21025547700593	4.31991096019916	4.25828124042637	0.668671122060619	0.113206787554811	0.371933807125036
Merged-chr11-97801180-4	chr11	97801095	97801295	+	947.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010688, intron 1 of 6)	intron (NM_010688, intron 1 of 6)	1630.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	4.25899247731335	3.91818090275599	4.17219429350715	4.0556591155375	4.48638722112028	4.34320429063134	4.01188467769213	3.86537936022923	0.273030625853747	0.532638161515834	0.788200754532765
Merged-chr14-20892088-3	chr14	20891967	20892167	+	822.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37331.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	3.47308279116676	3.68216120025699	3.83900795780229	3.91558758625507	3.53628939208279	3.5889174212464	3.2697072425915	3.83661860265121	-0.539433724564763	0.299594565615235	0.611833407526447
Merged-chr2-103965714-4	chr2	103965617	103965817	+	961.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142337, intron 1 of 3)	intron (NM_001142337, intron 1 of 3)	-3840.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	4.88507794024016	4.72798891222294	4.88589692280455	5.1035533478775	4.60777799755485	4.31164742071155	4.64265355834238	4.84827333166958	-0.630164022851127	0.0788717263719268	0.303936474009386
Merged-chr9-121708980-3	chr9	121708910	121709110	+	836.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1379.0	NM_026794	26901.0	Mm.24848	NM_026794	ENSMUSG00000032526	Ss18l2	1110020I04Rik|AI463209|Deb1	SS18, nBAF chromatin remodeling complex subunit like 2	protein-coding	2.95552022184572	2.91881198761919	2.66454861140253	2.72638112079197	3.33913529329699	3.25314005714503	3.12686661372143	3.29831845670786	1.8454057420564	0.00179481260740424	0.0214927601921983
Merged-chr4-86857381-4	chr4	86857263	86857463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009096)	promoter-TSS (NM_009096)	4.0	NM_009096	20104.0	Mm.379007	NM_009096	ENSMUSG00000028495	Rps6	S6R	ribosomal protein S6	protein-coding	8.17976870450049	8.27508099983754	7.89838623930038	8.03726492141345	8.15281732988089	8.28427181477332	8.24615683002144	8.32320257115091	0.186402099202309	0.257604794797983	0.569440392056059
Merged-chr7-127769846-4	chr7	127769750	127769950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198424)	promoter-TSS (NM_198424)	35.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	6.65218337459634	6.62533383571972	6.48075405909479	6.24292394636459	6.59228905650487	6.31304494187058	6.43077201957174	6.57313794639527	-0.0120464529345804	0.957828500624396	0.984921842301381
Merged-chr4-156108859-10	chr4	156108780	156108980	+	962.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1118.0	NM_145557	230996.0	Mm.318925	NM_145557	ENSMUSG00000059939	9430015G10Rik	-	RIKEN cDNA 9430015G10 gene	protein-coding	3.04314886876618	3.01296827640181	3.1733991390412	2.98911130111496	3.43007321451124	3.51644928214884	3.22164837115126	3.49794637866216	1.38668627296553	0.00968262840625679	0.0771335649473142
Merged-chr2-20961486-4	chr2	20961385	20961585	+	834.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128084, intron 1 of 24)	intron (NM_001128084, intron 1 of 24)	6236.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	4.35499678854193	4.1636471473277	3.80392224114073	4.08380063248375	4.07250122349892	4.1875465918304	4.04558300923975	3.61851283562967	-0.304792612294784	0.50735274644124	0.772710503440438
Merged-chr1-127859290-4	chr1	127859168	127859368	+	946.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9505.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	2.80284668498457	2.73333889786563	2.87946498673006	2.77573077261518	3.27628887549335	3.38478448690127	3.71148475304475	3.42291151479528	2.65054875982532	1.35996122140527e-05	0.000363502364920787
Merged-chr11-118200532-4	chr11	118200430	118200630	+	660.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	L1MB3|LINE|L1	12212.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	3.30767831439535	2.90877115544544	3.41972966303698	3.3532879228355	3.38887002663569	3.42160311589623	3.45751609108639	3.41778808494856	0.549291525657837	0.320602597900839	0.632430335149585
Merged-chr8-70616860-4	chr8	70616769	70616969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153074)	promoter-TSS (NM_153074)	25.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	6.97968867611952	7.08924141052579	7.30519803324087	7.10242287922316	7.24122747792001	7.22253339710181	7.47454475119351	7.18256037269411	0.220619357057692	0.244087293889392	0.555165026098516
Merged-chr7-134689633-4	chr7	134689565	134689765	+	884.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033420, intron 1 of 51)	intron (NM_001033420, intron 1 of 51)	18978.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	3.68052241042911	3.78415975978072	3.98922470882228	3.56368278977967	4.11518153037292	3.91304775225882	3.66704786363237	4.15707711962863	0.648433615271273	0.163214369230273	0.45279789482175
Merged-chr19-17314710-4	chr19	17314568	17314768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	24837.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	5.67642016647888	5.24299070204133	5.5518549528934	5.62119390293166	5.34804845820857	5.33073759112782	5.52389070518067	5.64928306978656	-0.12213649654539	0.668408795736075	0.862948051435654
Merged-chr2-30124551-4	chr2	30124427	30124627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290503)	promoter-TSS (NM_001290503)	84.0	NM_178694	227693.0	Mm.44526	NM_178694	ENSMUSG00000039686	Zer1	C230075L19Rik|Zyg11bl	zyg-11 related, cell cycle regulator	protein-coding	6.62589694046638	6.31372771242419	6.46336364020417	6.51292823112795	6.74711927875645	6.70770112338783	6.69586802199659	6.66753053220986	0.322513303780456	0.116512572885752	0.377635281883107
Merged-chr9-95853101-4	chr9	95853002	95853202	+	882.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4415.0	NR_073361	73410.0	Mm.443314	NM_028533	ENSMUSG00000096655	1700065D16Rik	-	RIKEN cDNA 1700065D16 gene	protein-coding	4.17582935150125	4.33705111830171	4.02821892307575	4.01916122297843	4.38697065618075	4.25416104816788	4.15835577364568	4.38798715740088	0.408405661976613	0.304387684900915	0.616988329768724
Merged-chr2-3424014-4	chr2	3423915	3424115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146114)	promoter-TSS (NM_146114)	-116.0	NM_146114	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	9.00499581215667	9.04535064096816	9.0134260865781	9.1796373037936	8.9417204904493	9.10014138309727	9.10646341107593	8.96495570859179	-0.0472510761461293	0.739908368189226	0.89763324480742
Merged-chr10-120857809-4	chr10	120857712	120857912	+	870.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038023, intron 1 of 2)	intron (NR_038023, intron 1 of 2)	183.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	4.40838975159367	5.0871203823599	5.67423683911081	5.30066092439419	4.37497567802668	4.69387870882482	4.5365727666049	4.98872919228334	-1.05101906105851	0.0132788643484253	0.0964268807852033
Merged-chr10-36916963-4	chr10	36916862	36917062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57582.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	6.32010273071191	6.00335368015932	6.56462163910497	6.5391449699012	5.84377518283717	5.80513703090747	6.39136502168659	6.35198942203367	-0.389632028692068	0.155978344758211	0.441850702493124
Merged-chr2-118537445-4	chr2	118537342	118537542	+	875.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	7145.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	4.20244280951551	4.14792892629097	4.1096476229023	3.99914563084233	4.28940455383046	4.32912893218557	4.27065579549235	4.15469561086498	0.395098663179773	0.313250692908891	0.625166179930743
Merged-chr8-4322648-4	chr8	4322555	4322755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010485, intron 1 of 5)	intron (NM_010485, intron 1 of 5)	2445.0	NM_010485	15568.0	Mm.119162	NM_010485	ENSMUSG00000040028	Elavl1	2410055N02Rik|HUR|Hua|W91709	ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)	protein-coding	6.05144830386947	5.95500266885527	5.81570382046074	6.32327838800439	6.41114079408789	6.33147469753228	5.83693295754743	6.37023716859567	0.296482159575949	0.265324687299653	0.577001515467012
Merged-chr9-70679521-1	chr9	70679421	70679621	+	970.0	f0_balb.idr	intron (NM_007399, intron 1 of 15)	CpG	539.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	4.89591449662049	4.41020073529615	4.47937029759315	4.52792362382152	4.57801571337254	4.96635606096333	4.58600554762634	4.75712992446316	0.299396161469495	0.411991265460614	0.70726552639751
Merged-chr10-85003728-2	chr10	85003628	85003828	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183172, intron 9 of 9)	intron (NM_183172, intron 9 of 9)	86115.0	NM_183172	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	3.09850153298932	3.17287643387871	3.34049375187304	3.51752210186541	3.33728622842704	3.45314795123876	3.21396731104504	3.28246399245144	0.0642387922590932	0.907534569166914	0.96572638861679
Merged-chr19-38931511-4	chr19	38931383	38931583	+	894.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008234, exon 2 of 22)	exon (NM_008234, exon 2 of 22)	493.0	NM_008234	15201.0	Mm.57223	NM_008234	ENSMUSG00000025001	Hells	AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8	helicase, lymphoid specific	protein-coding	4.339927902332	4.23742202943188	4.15470399828147	4.37742440739316	4.66391039470071	4.28030430433682	4.4040190734741	4.24842188654915	0.318063566475249	0.416046004007564	0.710072021761014
Merged-chr6-34754707-4	chr6	34754638	34754838	+	787.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145575, intron 4 of 11)	intron (NM_145575, intron 4 of 11)	-25694.0	NM_001289658	76223.0	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	3.90553343383652	3.89334652040993	4.10119474133202	3.84458371025192	4.13287625943463	4.13060711705883	4.03754889339058	4.18593083146144	0.514836118579381	0.211501998066595	0.516148411574114
Merged-chr9-21030957-4	chr9	21030884	21031084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023892)	TTS (NM_023892)	-1054.0	NM_008319	15898.0	Mm.4629	NM_008319	ENSMUSG00000032174	Icam5	CD50|ICAM-3|Icam3|TLN|Tlcn	intercellular adhesion molecule 5, telencephalin	protein-coding	7.72661520083874	7.94982225221022	7.48698723547111	7.59006892143436	7.94459794180038	8.03614633743769	7.69027147028768	7.84615645043166	0.24385866917159	0.189586933991233	0.488556345737121
Merged-chr7-128345118-4	chr7	128345005	128345205	+	825.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46974.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	3.59647688333325	3.66120723960657	3.34031627304381	3.67813504720041	3.62419806628988	4.20515951194842	3.89042901839296	3.90554277084565	0.973147228699911	0.0491111474583501	0.229089872530172
Merged-chr8-83740299-4	chr8	83740198	83740398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	intron (NM_011925, intron 1 of 19)	1013.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	7.03423353034012	7.45893631766654	6.32096201055202	6.32284420225436	6.84871634673198	7.22372120712431	6.80878985061781	6.91902084960361	0.114361944679676	0.702262678580295	0.880056958725802
Merged-chr18-67205367-4	chr18	67205280	67205480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024190)	promoter-TSS (NM_024190)	21.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	7.16620821395068	7.21102760627349	6.68824224885977	7.01338133689554	7.72659409743955	7.75996259459722	7.54559028355084	7.58614223823594	0.833415393642611	1.9070358444591e-05	0.000487750285205728
Merged-chr17-65724440-4	chr17	65724351	65724551	+	858.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	48301.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	4.26543738610509	4.42183125709823	4.51762027482629	4.58614806837358	4.27792424000534	4.19078047463936	4.2476281942788	4.39528875887132	-0.435418315701569	0.255294002612603	0.566865111326869
Merged-chr15-76948461-4	chr15	76948436	76948636	+	987.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_054099, exon 1 of 4)	5' UTR (NM_054099, exon 1 of 4)	275.0	NM_001347540	117171.0	Mm.322968	NM_054099	ENSMUSG00000063236	1110038F14Rik	-	RIKEN cDNA 1110038F14 gene	protein-coding	4.59883440892895	4.89734138851633	4.4675589828545	4.55792445510308	4.74224060948861	4.81507284748945	4.49285287954385	5.1059112358398	0.348888262039867	0.338973218387038	0.648223242193853
Merged-chr14-33203958-4	chr14	33203846	33204046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-12877.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	6.21120927816429	6.40866992292609	6.26736848498818	6.49127821777776	5.75961729175266	5.94580961434528	5.71111252561319	5.84043363175329	-0.856921743927711	0.000326125529727424	0.00543127961639408
Merged-chr2-160250486-4	chr2	160250392	160250592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77002.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	5.44896760303384	5.50874856122356	5.85154730730088	6.17418346323025	5.71047882941951	5.65965851135114	6.08773418677627	5.89242845110764	0.0740368974546073	0.806656698107227	0.925468917563778
Merged-chr2-53668789-4	chr2	53668684	53668884	+	891.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	416768.0	NM_023396	67874.0	Mm.27086	NM_023396	ENSMUSG00000075334	Rprm	2410012A13Rik|Reprimo	reprimo, TP53 dependent G2 arrest mediator candidate	protein-coding	4.70664140664459	4.65863390062376	4.8482029201784	5.23120645828205	4.14599648124197	4.39849201494511	4.60893257043666	4.36600332904443	-1.13948156799731	0.00361347262386495	0.0369651290448524
Merged-chr15-6591623-1	chr15	6591523	6591723	+	693.0	f0_balb.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	11776.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	3.45604545995841	3.50171661795968	3.3459475215102	3.41771611681009	3.23998409642833	3.33647949786137	3.27535913803253	3.50638871363346	-0.325152514739706	0.528882401754745	0.78532460936459
Merged-chr1-86046196-3	chr1	86046019	86046219	+	803.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001144992, exon 1 of 3)	exon (NM_001144992, exon 1 of 3)	256.0	NM_001144992	72792.0	Mm.54981	NM_001144992	ENSMUSG00000026227	2810459M11Rik	-	RIKEN cDNA 2810459M11 gene	protein-coding	3.34722209139467	2.9714176880805	3.29856020408303	2.85170323487995	2.80581367423375	2.85172860408316	3.06821154946478	3.07836801888068	-0.716791952643296	0.256409697629864	0.568035663479493
Merged-chr4-28813816-3	chr4	28813743	28813943	+	898.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010141, intron 1 of 16)	CpG	698.0	NM_001122889	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	3.8760588837816	3.62924490873385	4.24855154013416	3.86636830830111	3.77321320409055	4.00069481158264	3.9127192150438	4.5945175897396	0.496001848296367	0.315003905237873	0.626968932691868
Merged-chr17-5843590-7	chr17	5843508	5843708	+	912.357117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 1 of 17)	intron (NM_025664, intron 1 of 17)	2228.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	3.85442438506103	4.50651936582355	4.24624588495691	4.14592647219561	4.09386466023584	4.13940024737419	3.99912675203829	3.96207593044516	-0.408704162426156	0.3459500782874	0.654294689050588
Merged-chr18-26711635-4	chr18	26711526	26711726	+	996.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-957469.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	5.25027284252705	5.06637468605093	5.18898246299889	5.07808597299857	5.43274133565446	5.26466328058008	5.19476002149443	5.2168654076377	0.2751659381739	0.346072681179979	0.654364893116659
Merged-chr13-92968630-3	chr13	92968526	92968726	+	873.355591	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104678.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	3.36249996514798	3.51089217373718	3.36287791231455	3.23346368066304	4.36874289419065	4.62080960584104	4.67880745487412	4.2150093018342	3.17143201753536	4.13597831418971e-11	3.3606712377364e-09
Merged-chr4-9669812-2	chr4	9669717	9669917	+	672.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023066)	promoter-TSS (NM_023066)	-473.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	3.38526718191863	3.21607740862987	3.38572002896548	3.52196332628295	3.22469059731514	3.25383411781777	3.37262440380294	3.53937158098578	-0.137466312501116	0.795864900488973	0.920985022547994
Merged-chr7-44304073-1	chr7	44303973	44304173	+	582.0	f0_c57.idr	3' UTR (NM_009131, exon 4 of 4)	3' UTR (NM_009131, exon 4 of 4)	2886.0	NM_009131	20256.0	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding	2.75540892507066	2.54052603358026	2.89251709921431	2.38997806821734	3.1258889912311	3.49795365367725	2.88153442547681	2.890982196815	2.13263379655853	0.00214912079930192	0.0247326437941588
Merged-chr6-90736361-2	chr6	90736261	90736461	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	CpG	-19832.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	3.13668729685463	2.97887166503272	3.07798020311214	3.0959344846195	3.28205713768601	2.98924197096253	3.06718625518138	3.24582958003036	0.328893505892945	0.559115535126962	0.803628380816647
Merged-chr17-47515711-4	chr17	47515600	47515800	+	824.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	10649.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	4.50326557837503	4.5861336073555	4.42468307281519	3.95370628102483	4.23958999947947	4.42420078158669	4.32048481040694	4.24691639655096	-0.162829549056733	0.696399446559255	0.87720351466414
Merged-chr14-46821514-4	chr14	46821410	46821610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022023, intron 1 of 6)	intron (NM_022023, intron 1 of 6)	732.0	NM_022023	63985.0	Mm.87312	NM_022023	ENSMUSG00000062014	Gmfb	3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e	glia maturation factor, beta	protein-coding	5.85149225907733	6.1112681971832	5.5603809527135	6.2901564915071	5.94960390798461	5.87858794898356	5.99853984354658	5.64291193545855	-0.199758276687832	0.478804922262469	0.754690163973656
Merged-chr2-153092864-4	chr2	153092762	153092962	+	921.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15606.0	NM_001172117	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	4.78464716370843	4.88092066616645	5.34874272599059	4.93579573184259	4.80903775642268	5.51918960220423	5.08893032268589	5.1106492408562	0.279447427001335	0.423567758225601	0.715474711788711
Merged-chr10-70150907-4	chr10	70150792	70150992	+	941.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111121, intron 2 of 8)	intron (NM_001111121, intron 2 of 8)	53771.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	4.90880570094712	5.13928899117926	5.04888876327142	5.55361427530154	4.6103666990733	4.84757197339905	4.81111888155373	5.04543487117997	-0.738854537166886	0.0357647456740863	0.18784809602997
Merged-chr1-79848872-4	chr1	79848765	79848965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009255, intron 1 of 8)	intron (NM_009255, intron 1 of 8)	9800.0	NM_009255	20720.0	Mm.3093	NM_009255	ENSMUSG00000026249	Serpine2	B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4	serine (or cysteine) peptidase inhibitor, clade E, member 2	protein-coding	6.99501049967107	6.99571000289025	7.3833929141844	7.38913172326265	7.09615406111799	6.90088554183771	7.39320582915757	7.1378509046654	-0.0926423762880923	0.664657387623492	0.861062110279118
Merged-chr1-37890504-4	chr1	37890422	37890622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026913)	promoter-TSS (NM_026913)	45.0	NM_027098	107734.0	Mm.26614	NM_027098	ENSMUSG00000026087	Mrpl30	2310001L22Rik|L30mt|MRP-L28|MRP-L30|Rpml28	mitochondrial ribosomal protein L30	protein-coding	7.25887099733143	7.2613704505565	7.0949526847531	6.74082600774508	7.00845879419739	7.31770548835289	7.02354079867338	6.88597162724998	-0.0387824190825114	0.860153606765888	0.947123023003096
Merged-chr9-99379723-4	chr9	99379627	99379827	+	821.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21197.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	3.48974679727628	3.42934764607534	3.70859956455322	3.85712012093445	3.68946510997756	3.54238216113937	3.69341750788166	3.89153168944362	0.197757179277392	0.691433841885557	0.874516938750953
Merged-chr4-140983535-4	chr4	140983419	140983619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3354.0	NM_029097	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	8.41927800047738	8.1468870417482	8.22447928559252	8.42114413418976	8.08497892559861	8.18345528087921	8.49209282839156	8.12729263072863	-0.103320037380921	0.553641765970559	0.800318181560082
Merged-chr13-20182408-4	chr13	20182311	20182511	+	791.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	91904.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.59223171037498	3.95114499610829	3.6519906991116	3.4663440734808	4.04753473951826	3.88383156963026	3.84919344146185	4.08822956676539	0.879861581406752	0.0572523691795531	0.2508103388621
Merged-chr1-43465180-4	chr1	43465096	43465296	+	792.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	19445.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	3.93661201702696	3.69451763831117	3.55919756967366	4.02529254229849	3.91018994487663	3.85348319974176	4.05174630235865	3.78628839591271	0.208675148098431	0.654595537349512	0.855659697629251
Merged-chr17-5206972-4	chr17	5206866	5207066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	211801.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	6.72140540120279	6.70522496285979	6.47898232252558	6.9437852787381	6.58125692665377	7.01137695028325	6.6281260967948	6.93410362572247	0.0822721653658655	0.716587026106847	0.886643627014433
Merged-chr16-91355400-4	chr16	91355329	91355529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17354.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	8.12258831375653	8.47123556519884	8.36882035665631	8.47075703988834	8.18872106239595	8.44741201424946	8.34550226613028	8.05920521051101	-0.132680931198551	0.442869383577973	0.729608850831255
Merged-chr1-157039268-4	chr1	157039191	157039391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69359.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	7.53806137253433	7.89941771381786	8.08053853447563	7.53616593825392	7.7397371780548	8.00903021033175	7.9139073555893	7.38455417169668	0.00173233927925114	0.993636979350783	0.997702270136287
Merged-chr12-4232953-4	chr12	4232854	4233054	+	904.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134046, intron 2 of 6)	intron (NM_134046, intron 2 of 6)	1011.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	4.50646533775154	4.31627047444361	4.54703117052259	4.90855848774701	4.67415179369319	4.26067191692141	4.22019962967047	4.37685793695412	-0.443879976718168	0.278355276296816	0.590535310766625
Merged-chr2-154892850-4	chr2	154892665	154892865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026030, exon 1 of 9)	5' UTR (NM_026030, exon 1 of 9)	141.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	6.99892628369921	6.9743816555619	6.91079603132799	5.81742588116057	7.08411168278183	7.27168248606968	7.01278397125047	7.2200220496266	0.557586282992399	0.053586300868367	0.241629193138818
Merged-chr12-55652941-3	chr12	55652840	55653040	+	863.8444210000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003719, intron 36 of 39)	intron (NM_001003719, intron 36 of 39)	54023.0	NM_020287	56856.0	Mm.114886	NM_020287	ENSMUSG00000045440	Insm2	Mlt1	insulinoma-associated 2	protein-coding	4.57736180386498	4.60848858324181	4.6914431698601	5.08839169488641	4.34010703655307	3.98636358294682	4.24869030319528	4.68828769306812	-0.964356280502358	0.0205036801883192	0.130178525744748
Merged-chr16-85281906-2	chr16	85281812	85282012	+	608.25	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108205.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	2.31074785874398	2.26147544685013	2.31092971963127	2.00117330728281	3.16435616435266	3.06341639652017	3.18285230784856	2.69573599252479	6.98166111870821	1.8646669125962e-11	1.60878940814164e-09
Merged-chr5-64267487-1	chr5	64267387	64267587	+	885.0	f0_balb.idr	intron (NM_001289514, intron 5 of 18)	intron (NM_001289514, intron 5 of 18)	37130.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	3.22029016889831	3.16011320779336	3.57332430405891	3.51514886431104	3.21960188132531	3.07349666344663	2.88558089099707	3.09758990012382	-1.1699504060424	0.0519131933879719	0.237140880000157
Merged-chr3-54361115-4	chr3	54361021	54361221	+	839.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198766)	promoter-TSS (NM_001198766)	14.0	NM_015784	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	5.1547545996349	5.10616051242693	5.2641537064892	5.29312738263254	4.05234878745781	4.32071784357791	4.48324172558739	4.59147194510806	-1.82749341520286	6.65066130267337e-07	2.40909628937907e-05
Merged-chr13-111792629-3	chr13	111792532	111792732	+	708.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	16361.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	3.25946152823562	3.13743819696686	3.14827708537918	3.11128142961828	2.91427605716937	3.19897005562571	3.19272030915725	3.02465484735839	-0.320173974442822	0.572495064828516	0.811251013052168
Merged-chr7-98321264-4	chr7	98321180	98321380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360615)	promoter-TSS (NM_001360615)	-72.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	6.01831080918873	5.97166851838776	5.95390163167268	6.22346561886963	5.79257720478826	6.10668544774485	5.90112027054503	5.97184803154023	-0.190811706015484	0.437793416645477	0.726003622104912
Merged-chr2-6478053-2	chr2	6477953	6478153	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125317.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	3.73522145319317	3.22301896066311	3.96993571979176	3.68318141763981	4.01551701808056	3.90705903454177	3.5581110713738	3.51025116608744	0.274614620569911	0.611977201801493	0.832680684364583
Merged-chr12-12301358-4	chr12	12301248	12301448	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	Lx8|LINE|L1	39209.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	5.20085209490386	4.79425520050337	4.51515444211006	4.86391418809592	4.86056218467872	5.16112040773549	4.96510067909447	4.69018566432652	0.122739657928185	0.72840471297877	0.89196275508999
Merged-chr8-60631714-1	chr8	60631614	60631814	+	770.5	f0_balb.idr	Intergenic	Intergenic	-1111.0	NM_027756	71306.0	Mm.23242	NM_027756	ENSMUSG00000031647	Mfap3l	4933428A15Rik|5430405D20Rik|AI461995|AW125052|NYD-sp9|mKIAA0626	microfibrillar-associated protein 3-like	protein-coding	2.84380165122587	2.57398109532822	2.89629920881418	2.40062610658187	2.24551598876208	2.5113797642931	2.39820270556947	2.32790365350876	-1.86714636528345	0.0192731012643009	0.124814855326328
Merged-chr5-41738996-4	chr5	41738912	41739112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25208.0	NM_007524	12020.0	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	6.45153853418082	6.19489959793112	6.46962141678706	6.57541777642827	6.66885058554267	6.40660777723719	6.59370443816229	6.2844805712334	0.0991281129700536	0.664540234127125	0.861009602629657
Merged-chr13-51742986-4	chr13	51742887	51743087	+	856.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281880, intron 2 of 16)	intron (NM_001281880, intron 2 of 16)	50760.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	3.91537852560708	4.07623290408959	4.72017748662264	3.63695153299514	4.26111657454356	3.92355353252316	4.19529820345844	4.33867165672757	0.105854759913965	0.831701078836357	0.935578277553781
Merged-chr7-29214557-3	chr7	29214464	29214664	+	706.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164658)	promoter-TSS (NM_001164658)	-531.0	NM_001164658	320225.0	Mm.349382	NM_001039721	ENSMUSG00000049676	Catsperg1	A230107C01Rik|Catsperg	cation channel sperm associated auxiliary subunit gamma 1	protein-coding	3.59608278527291	4.04620089944454	3.34939630374437	3.18632203030856	3.94856326840773	3.71613946616395	3.92306890777948	3.47682138836667	0.579591173634537	0.299998359865527	0.612201354841409
Merged-chr1-156066772-2	chr1	156066656	156066856	+	922.900024	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001358627, exon 6 of 6)	3' UTR (NM_001358627, exon 6 of 6)	25895.0	NM_022329	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	2.75516525525408	2.80278009893582	2.82599050995122	2.69403281754843	3.11975850794707	3.24499350023845	3.06366220418064	3.12992423827869	1.63003780481497	0.00519449546687231	0.0488814110042972
Merged-chr5-142222355-3	chr5	142222245	142222445	+	845.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-179152.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	3.3812981116954	3.27983353403163	3.456749161485	3.60568677006076	4.30154103674101	4.12989681019907	4.71316577105443	4.64862026509122	2.78614283487819	4.67128131966063e-07	1.74264744786228e-05
Merged-chr17-47508155-4	chr17	47508066	47508266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	3115.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	7.10113174939211	6.80187623278571	6.67820789881582	6.82924042798589	6.81752224023405	6.6396134853934	6.64417968557764	6.51043015340938	-0.276048161093052	0.193401011184949	0.493620574266117
Merged-chr16-76416599-4	chr16	76416498	76416698	+	610.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-42771.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	3.26194050813339	3.10048736836163	3.06474894625918	3.22763743180361	3.7407154606173	3.37573603771985	3.52204557241241	3.53523925135246	1.33993489359806	0.0115846132083621	0.0876374942669791
Merged-chr11-11820419-4	chr11	11820336	11820536	+	939.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016672, intron 12 of 14)	intron (NM_016672, intron 12 of 14)	-11474.0	NM_001163360	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	4.64853698474276	4.44805838457996	4.35110384222831	4.69689721811483	4.60505556484134	4.81998449744632	4.58926754353737	4.52696632528921	0.176804513152552	0.624874214082165	0.839659374707287
Merged-chr9-61363369-2	chr9	61363269	61363469	+	848.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-8997.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	2.8062640866374	2.95336511597487	2.97902368115939	2.58048493274199	2.97455299198147	2.55964235620022	2.60056568128421	2.67621075702918	-0.536352183472808	0.443098622236025	0.729779110682633
Merged-chr5-3152205-4	chr5	3152105	3152305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-191688.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	7.05099103022021	7.00329010045538	6.78795031290587	5.81043819987363	6.70216768903858	7.01926343497611	6.92265211732321	6.5363931700893	0.0921916351063158	0.762418247922825	0.906948466957998
Merged-chr14-62837398-4	chr14	62837318	62837518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175546)	promoter-TSS (NM_175546)	-272.0	NM_175546	268752.0	Mm.1960	NM_175546	ENSMUSG00000014547	Wdfy2	5830485M08|B130024L21Rik|ProF|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding	8.31283701679427	8.69445407909451	8.50522894031003	8.10553673331473	8.69211806041606	9.0368880467251	8.66934971002261	8.31446880067441	0.355939839595069	0.0854769219101752	0.318359155703227
Merged-chr1-37491827-4	chr1	37491675	37491875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 4 of 15)	intron (NM_173870, intron 4 of 15)	-3170.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	7.18346124564249	7.47207584563869	7.3032326217878	7.213460882405	7.27691425666132	7.23107644755249	6.98024130722359	7.17967424904063	-0.163699299107761	0.387553846480063	0.688437615138617
Merged-chr14-51057617-3	chr14	51057517	51057717	+	738.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001011875)	promoter-TSS (NM_001011875)	-375.0	NM_001011875	497106.0	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	3.55303537180162	3.31934897968465	3.68949025630697	3.21110712303312	3.14959592924277	2.98831397262177	3.15405503846735	3.39907867736493	-0.989563624731937	0.0900118710523916	0.327603598428168
Merged-chr19-60580243-4	chr19	60580164	60580364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172097, intron 1 of 6)	intron (NM_001172097, intron 1 of 6)	759.0	NM_001172097	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	5.74628316574542	5.56717322787798	5.93104710807176	5.6749670289369	6.08485798513852	5.87220086317211	5.61586881300866	5.66683495777028	0.172549280953567	0.522625180194717	0.781990067507927
Merged-chr13-64308194-4	chr13	64308108	64308308	+	944.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025370, intron 4 of 5)	MTD|LTR|ERVL-MaLR	4502.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	6.45259011635759	6.56631669881561	6.82932772195415	7.01213303102637	4.9212407060813	5.13883463689291	5.56411060991585	5.67741094302205	-2.2177768553976	1.25590106740743e-13	1.60491529761209e-11
Merged-chr6-126853236-4	chr6	126853128	126853328	+	988.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009650, exon 1 of 6)	5' UTR (NM_009650, exon 1 of 6)	130.0	NM_009650	11642.0	Mm.87748	NM_009650	ENSMUSG00000030344	Akap3	Prka3	A kinase (PRKA) anchor protein 3	protein-coding	4.92653755785764	4.67788872339691	5.23025218442992	5.10610938094213	4.79368649625357	4.61012166417276	4.68005774442916	5.11543407564346	-0.38284827496167	0.27952446134967	0.591517173100493
Merged-chr4-11550306-4	chr4	11550214	11550414	+	895.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347055, exon 24 of 24)	3' UTR (NM_001347055, exon 24 of 24)	-8606.0	NM_001039556	623474.0	Mm.491200	NM_177285	ENSMUSG00000078773	Rad54b	E130016E03Rik	RAD54 homolog B (S. cerevisiae)	protein-coding	4.71999727613204	4.30306867134281	4.1047716518956	4.83538741770665	4.64520521377521	4.39161520649017	4.58972747846652	4.56975198055379	0.0318445396271361	0.937859778645725	0.977460307804652
Merged-chr15-82047427-6	chr15	82047304	82047504	+	955.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011482, intron 1 of 2)	CpG	194.0	NM_011482	20826.0	Mm.299312	NM_011482	ENSMUSG00000063480	Snu13	FA-1|Fta1|Nhp2l1|Ssfa1	SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)	protein-coding	4.69680429456771	4.91469605091264	4.69756952748643	4.11197387773512	4.91113213192677	4.87242371201102	4.71395998362181	5.00762894788008	0.539187549208188	0.161241782547539	0.449940309725276
Merged-chr14-31397854-3	chr14	31397791	31397991	+	949.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	19786.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	3.51461400247459	3.23165547798148	3.75952314927103	4.15442685167435	3.25399533230059	3.18385343237599	3.26850378980745	3.34086915932673	-1.57707359139024	0.0081816549446928	0.0681763073411717
Merged-chr6-81976148-3	chr6	81976055	81976255	+	702.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10206.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	3.31645232163103	3.09594958896863	3.20568294106649	3.14264721700057	3.51870699347814	3.12769365682036	3.30342730743893	2.87662790848487	0.176229743246136	0.766674604511301	0.908701030314548
Merged-chr4-116683240-4	chr4	116683142	116683342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2357.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	6.12570679274973	5.87428703915555	6.04322314747081	5.97109484620291	6.28767587144135	6.34142842229556	6.01237121699439	6.23810028912359	0.349184980826811	0.134981014588529	0.408964952853909
Merged-chr3-14611346-4	chr3	14611247	14611447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347206)	promoter-TSS (NM_001347206)	-91.0	NM_001099674	69126.0	Mm.389020	NM_001099674	ENSMUSG00000078784	1810022K09Rik	AI746582|AL023036	RIKEN cDNA 1810022K09 gene	protein-coding	9.20617005511232	9.3178815216603	9.08436237852388	9.43171104684918	9.12457576236999	9.0944293323338	9.54238990949677	9.03720847811616	-0.0662439192976988	0.702574152363854	0.88029230564007
Merged-chr14-61689560-4	chr14	61689454	61689654	+	937.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7181.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	5.44285522498554	6.00793928987991	5.33395289942821	5.23162495510272	4.98063694521992	4.90591466408232	4.74409456777614	4.9295164736374	-1.19547787152694	0.000562934026610775	0.00848741391233391
Merged-chr7-80787530-3	chr7	80787414	80787614	+	859.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	LTRIS_Mus|LTR|ERV1	15817.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	3.08451643775945	3.74718160235254	3.00930773262419	2.72644318505358	3.64926596503064	3.58904408263806	3.55977186304122	3.80722915763814	1.48665186696209	0.0225851094233085	0.138804347597384
Merged-chr11-113703892-2	chr11	113703792	113703992	+	934.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_029794, intron 3 of 6)	intron (NM_029794, intron 3 of 6)	5634.0	NM_026682	52670.0	Mm.229207	NM_026682	ENSMUSG00000018727	Cpsf4l	0610010C04Rik|1500000C01Rik|D11Ertd636e	cleavage and polyadenylation specific factor 4-like	protein-coding	2.87679916917316	2.79020303473686	2.93958115321398	2.91303400483387	2.85005220170042	3.10789059528229	2.92913794500129	3.05430739525727	0.443675377764316	0.453236643252317	0.737392709258438
Merged-chr5-67427141-2	chr5	67427041	67427241	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164806, exon 1 of 5)	exon (NM_001164806, exon 1 of 5)	658.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	3.21833458310924	3.40637569351759	3.83633548843998	3.46716509420292	3.35565352174686	3.86483252282985	3.52141050906537	3.8776556921269	0.53568350382603	0.322313706441779	0.633896090595143
Merged-chr10-111004331-4	chr10	111004228	111004428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359624, intron 1 of 16)	MTE2a|LTR|ERVL-MaLR	5681.0	NM_001359622	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	5.22829252289414	5.52429758255104	5.6103172226389	5.81188004286004	5.59198876428338	5.50401716659178	5.50419210152199	5.29209870612055	-0.166422774181136	0.569579179901532	0.809408871400134
Merged-chr6-88500229-4	chr6	88500068	88500268	+	805.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	18632.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	3.76724783255363	3.70475355085888	3.55704432158755	3.66435983616061	3.86724090857599	3.4866131939308	3.75189259709956	3.61111146753868	0.0656513061295481	0.890229440129994	0.958908632118352
Merged-chr1-97659577-4	chr1	97659477	97659677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133825, intron 1 of 2)	intron (NM_133825, intron 1 of 2)	2099.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	6.80648758388863	6.68450617937688	6.84875290794092	7.22696618906716	6.79165147514931	6.46195169199497	6.98862197360723	6.54222093079554	-0.291975360700493	0.219583084782243	0.527217019204017
Merged-chr11-93995901-5	chr11	93995860	93996060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199203)	promoter-TSS (NM_001199203)	-131.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	6.77558975740954	7.33798606111205	6.76094636767911	6.68498370726127	7.80708932404897	7.78728336757444	7.76012609601857	7.07798066423448	0.97926881144402	7.57758999268657e-05	0.00160096550338212
Merged-chr8-121906645-4	chr8	121906528	121906728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011404, intron 1 of 9)	intron (NM_011404, intron 1 of 9)	1058.0	NM_011404	20539.0	Mm.22374	NM_011404	ENSMUSG00000040010	Slc7a5	4F2LC|D0H16S474E|LAT1|TA1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	protein-coding	6.03297614253157	5.68524559775398	5.44848834481177	6.00474829693161	6.14269711634284	6.20979124792758	6.21728821192321	6.50374117648964	0.691137316271652	0.00938042156195768	0.0754432174847714
Merged-chr7-128305093-4	chr7	128304980	128305180	+	786.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6949.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	3.40094034252439	3.93280993092908	4.03646888012792	3.24094139713513	4.0595345960059	3.58615046147596	4.05794128458938	3.52871268739952	0.398494924660111	0.480563881355911	0.75600177940663
Merged-chr9-123717672-4	chr9	123717602	123717802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033322)	promoter-TSS (NM_033322)	-77.0	NR_151689	93730.0	Mm.378263	NM_033322	ENSMUSG00000025245	Lztfl1	5530402H04Rik|6130400H19Rik|AI414725|AW048545	leucine zipper transcription factor-like 1	protein-coding	7.86630221367662	8.05901091036135	7.51657251597101	7.55416068935249	8.30492581572878	8.30700575090711	8.01600904683697	7.94181866558486	0.502817320159217	0.0118197197616953	0.0889058261563682
Merged-chr10-115384888-4	chr10	115384793	115384993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033261)	promoter-TSS (NM_001033261)	-66.0	NM_001033261	216345.0	Mm.207621	NM_001033261	ENSMUSG00000034163	Zfc3h1	BC033596|Ccdc131|Psrc2	zinc finger, C3H1-type containing	protein-coding	8.93404017340507	9.07261912583287	9.26199444766497	9.22783012911713	9.06006211557354	9.05481921552312	9.23038715418945	9.03107196983949	-0.0455115322886553	0.763211829829376	0.907128857776656
Merged-chr11-113684546-4	chr11	113684436	113684636	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138598)	promoter-TSS (NM_138598)	102.0	NM_001361593	276852.0	Mm.239566	NM_177777	ENSMUSG00000041623	D11Wsu47e	-	DNA segment, Chr 11, Wayne State University 47, expressed	protein-coding	4.81333792322769	4.66799578524052	4.88593792900795	4.55421222138007	4.8111204809825	5.09182471324818	4.67641579009398	5.01488769296104	0.374235161014889	0.272142606540138	0.583705134421758
Merged-chr10-34235560-4	chr10	34235471	34235671	+	974.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28020.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	5.15067907024495	4.99446384278056	4.34556099297906	5.27681796568086	4.58876639083411	5.09665624668436	5.12584456741474	5.02221107897158	-0.0560309337962559	0.886171924704748	0.957247996194402
Merged-chr13-51639026-4	chr13	51638897	51639097	+	993.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6_Mm|LTR|ERV1	-6235.0	NM_025415	66197.0	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	4.50453519663581	4.88641476361392	5.03702551193693	3.90934394224486	5.05611536805597	4.93626396085739	4.91566444574101	5.03348549394121	0.693828718885147	0.0993132391716511	0.345656302919122
Merged-chr2-39190832-4	chr2	39190719	39190919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178778)	promoter-TSS (NM_178778)	-89.0	NM_178778	320271.0	Mm.204836	NM_178778	ENSMUSG00000035236	Scai	9330112M16|A930041I02Rik|AI662729	suppressor of cancer cell invasion	protein-coding	8.87361833106116	8.85537449580049	8.8158196793895	9.1106002832622	8.93568488606144	8.90574483649766	9.0533339645207	8.67832717795233	-0.0289905953910358	0.856488914819815	0.94598532807758
Merged-chr1-107399533-4	chr1	107399420	107399620	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23169.0	NM_027548	116872.0	Mm.66015	NM_027548	ENSMUSG00000067001	Serpinb7	4631416M05Rik|megsin|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 7	protein-coding	4.91814183878136	4.76501436309356	5.28757109116298	5.25852896751791	4.85370878333793	4.73063744241073	4.93026504242808	4.8039855456936	-0.499545132238136	0.140219860263108	0.416331265743453
Merged-chr18-9735017-4	chr18	9734900	9735100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	27352.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	7.00838596546328	6.9206653340576	6.99761066726999	7.16295664157505	6.39815259477154	6.90664849008095	6.65000953797509	6.53178051570104	-0.576436662736508	0.00685539618198009	0.0599757979536543
Merged-chr18-25241822-4	chr18	25241711	25241911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033532, intron 5 of 10)	intron (NM_001033532, intron 5 of 10)	72791.0	NM_001033532	225289.0	Mm.391081	NM_001033532	ENSMUSG00000033632	AW554918	4921538P22|AI461742|Kiaa1328|mKIAA1328	expressed sequence AW554918	protein-coding	5.82588680792564	5.74220607979649	6.06844389071341	6.34614682404386	5.62496407591472	5.82296607391293	5.99698458426136	5.82277173706969	-0.349443227332009	0.207046951643068	0.511049184276
Merged-chr7-43985821-4	chr7	43985744	43985944	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9783.0	NM_010116	13648.0	Mm.440884	NM_010116	ENSMUSG00000059042	Klk1b9	EGF-BP C|Egfbp-3|Egfbp3|KAL|Klk9|kallikrein|mGk-9	kallikrein 1-related peptidase b9	protein-coding	5.62306367883734	5.85377122069376	6.33871350765293	5.68303271273464	5.27692355611096	5.18564295037282	5.3062378512767	5.51142340468425	-0.975091685322229	0.00143539523195136	0.0180023011811065
Merged-chr2-152810366-4	chr2	152810288	152810488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	18101.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	6.9928853548171	7.07081046998337	7.44806994916247	7.20831927204657	7.36639714504653	7.04805969056511	7.04645609802032	7.39702565899832	0.0536911659295695	0.794586250534416	0.920576505358097
Merged-chr1-66859673-4	chr1	66859569	66859769	+	760.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007381, intron 1 of 10)	RMER16|LTR|ERVK	3640.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	4.67251641671154	4.04676677758974	4.42906553388939	4.20841876590839	3.96411352626202	3.97889471261544	4.24529111357013	4.17106096534013	-0.649165519559404	0.131819832099835	0.404210211448674
Merged-chr3-81933017-2	chr3	81932941	81933141	+	977.833374	f0_balb.idr|f0_c57.idr	intron (NM_177662, intron 1 of 7)	intron (NM_177662, intron 1 of 7)	440.0	NM_177662	229445.0	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	4.9958747396858	5.0312322749564	4.81052567662027	5.01108280378421	5.33764418887002	4.90649095787173	4.78814298330816	5.32603065024325	0.295961727811818	0.372204661081437	0.676099595682082
Merged-chr6-39781130-4	chr6	39781017	39781217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29819.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	5.94459093527876	5.68508611565695	5.56156832919966	5.77804914394863	6.25982905167632	6.14216698481567	5.937032311665	6.00594191694583	0.552536581129001	0.0272542931355407	0.157283389905517
Merged-chr3-16006442-4	chr3	16006352	16006552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081687)	promoter-TSS (NM_001081687)	-120.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	7.69462997850841	7.46226256053032	7.69593147543777	7.90095375625294	7.28275002850948	6.82596674786288	7.25706531082003	7.32033160661224	-0.683522653456773	0.000766656846365965	0.0108748241664972
Merged-chr5-43808185-4	chr5	43808075	43808275	+	989.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10718.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	5.01978364607639	5.4815231584657	5.27140152149642	5.6815176459613	5.445260764295	5.3824339839284	5.88937995129383	5.47749724993995	0.26963797618837	0.396321903548659	0.69519327480908
Merged-chr7-141539886-4	chr7	141539778	141539978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142681)	promoter-TSS (NM_001142681)	-21.0	NM_001142681	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	7.54997434958091	7.60020363985177	7.15926303738662	7.54853739674307	7.5186001115307	7.18342144719589	7.53159999486289	7.77214438351256	0.0524705161638645	0.797449699110883	0.921665185805435
Merged-chr11-53769043-4	chr11	53769008	53769208	+	921.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008390)	promoter-TSS (NM_008390)	-906.0	NM_001159393	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	4.56636085507077	3.81797844498973	3.97152894798992	3.69687710523574	4.30571663963784	3.92428505879053	4.05746589084527	4.7522007203989	0.606564610967028	0.226792094469142	0.535435155136788
Merged-chr2-145730688-4	chr2	145730536	145730736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 2 of 3)	intron (NR_033220, intron 2 of 3)	29441.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	5.51835574842525	5.57237623439776	5.51931582862456	5.68260452854051	5.09802694934818	5.35940746402564	5.77794207858778	5.31081372529924	-0.312187509337629	0.295181376158852	0.607298759245337
Merged-chr8-70618519-1	chr8	70618419	70618619	+	1000.0	f1_balb.idr	intron (NM_153074, intron 2 of 2)	intron (NM_153074, intron 2 of 2)	1675.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	6.31875649489721	6.6879702763829	6.20249076602419	5.63245441365144	6.48152945889321	6.49664658347395	6.53920888785981	6.68474487095684	0.441967787467375	0.118106689802625	0.380170508884494
Merged-chr11-46215530-4	chr11	46215448	46215648	+	779.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 26 of 30)	MER20|DNA|hAT-Charlie	-20009.0	NM_177075	320116.0	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	3.60225507953947	3.72149377894457	3.49203808125484	3.46877995556941	3.71591401760041	3.20267791755736	3.78206029608365	3.70248493736474	0.167172249977443	0.746295221074779	0.900058414084984
Merged-chr5-121923659-3	chr5	121923559	121923759	+	797.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007804, intron 3 of 22)	PB1D10|SINE|Alu	74662.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	3.56145163671293	3.49745308016181	3.40952668300957	3.7577333371126	2.83123645151067	2.99725542741987	3.39555195080241	3.10585756402838	-1.84643236878103	0.00307854538130245	0.032632581041806
Merged-chr4-108833653-4	chr4	108833539	108833739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027453)	promoter-TSS (NM_027453)	1.0	NM_027453	70533.0	Mm.379178	NM_027453	ENSMUSG00000028568	Btf3l4	4632412E09Rik|5730434I03Rik|AI316863|AU022207|AW552446	basic transcription factor 3-like 4	protein-coding	7.33480313498454	7.13468854167387	6.95136820031843	6.98018827988725	7.35544332830522	7.35270158991888	7.51905975367387	7.27976187382288	0.376340172614775	0.0485603249951707	0.227474522726637
Merged-chr17-84334464-4	chr17	84334357	84334557	+	979.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 27 of 37)	intron (NM_183021, intron 27 of 37)	131751.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	4.74355591269258	4.67413250506418	4.85654318935138	4.6717219917761	4.74269826348025	4.83955610330689	5.08906724708867	4.98879102164213	0.378368171199985	0.251472032983588	0.56287087730158
Merged-chr11-97698871-4	chr11	97698784	97698984	+	726.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163307, intron 1 of 10)	intron (NM_001163307, intron 1 of 10)	500.0	NM_001163307	22658.0	Mm.2418	NM_009545	ENSMUSG00000018537	Pcgf2	Mel18|Rnf110|Zfp144|mel-18	polycomb group ring finger 2	protein-coding	3.2372884323137	3.54162176752442	3.53981290391023	3.31926671830912	3.27541480772459	3.81261112139793	3.47087198740354	3.78245427534443	0.606278693556798	0.251848484754814	0.563082161340582
Merged-chr1-23184888-4	chr1	23184731	23184931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82578.0	NM_025746	66755.0	Mm.431297	NM_025746	ENSMUSG00000073730	4933415F23Rik	-	RIKEN cDNA 4933415F23 gene	protein-coding	5.68607216738461	5.79408202214485	6.17915530273305	6.379491262211	5.65031293518486	5.9435810981279	5.73727715468701	6.17471751126872	-0.268884429056536	0.357954658126606	0.664030682676162
Merged-chr9-52175490-3	chr9	52175339	52175539	+	851.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	polypurine|Low_complexity|Low_complexity	-7328.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	2.7397977160514	3.03716093667846	2.60258746367357	2.59064150889535	2.56710322242568	2.8479009482589	2.91080707732336	2.80246800215451	0.150281526975168	0.822075049323333	0.931996686031243
Merged-chr8-105291094-4	chr8	105291001	105291201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357379, intron 8 of 12)	intron (NM_001357379, intron 8 of 12)	-1573.0	NM_028888	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	5.55556236528311	5.36006840193772	4.59707721002659	5.11531990340053	5.3646573327044	5.40243437909398	5.23296780285776	5.19299985089773	0.184414061412244	0.589507375760494	0.820464677958613
Merged-chr18-60638427-4	chr18	60638328	60638528	+	983.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14123.0	NM_177340	104027.0	Mm.252321	NM_177340	ENSMUSG00000043079	Synpo	9030217H17Rik|9130229N11|9330140I15Rik|AW046661	synaptopodin	protein-coding	6.1521331139623	6.75719499894806	5.97489706854498	6.11203586214374	5.33651658456128	5.19802176785128	5.57862037882227	5.45312131177978	-1.44931550560685	1.40214476589865e-06	4.75027426425036e-05
Merged-chr19-24961751-4	chr19	24961643	24961843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033744)	promoter-TSS (NR_033744)	-127.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	8.74485679066974	8.85702849387851	8.60304320366504	8.31790752435959	9.11701540194119	9.14836283618446	9.05724979254618	8.75747880461237	0.484362706153391	0.00731349023375932	0.0628476302485518
Merged-chr8-106576010-3	chr8	106575917	106576117	+	783.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11126.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	3.46041900801065	3.70605006390218	3.80630874395348	4.07532913176348	3.75201303462393	3.70310510188052	4.01855448528664	3.90135865939842	0.144552603335389	0.769529584179066	0.909742530773464
Merged-chr16-24361934-4	chr16	24361847	24362047	+	887.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31403.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	4.38918546685827	4.6320683740415	4.52194397584368	4.74600934819163	4.43257220895164	4.318115873983	4.97788696720036	4.56018916740366	0.011946439491461	0.975398960012635	0.991307820304815
Merged-chr7-47025638-4	chr7	47025548	47025748	+	938.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17234.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	4.01827899849072	4.02483447795108	4.7993998859606	4.82282883226859	4.46963397659522	4.51012884739659	4.6752881587969	4.50571478143534	0.119248842621719	0.789763603732543	0.918593426288807
Merged-chr6-34907978-4	chr6	34907872	34908072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013366, intron 3 of 14)	intron (NM_001013366, intron 3 of 14)	2859.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	7.99878150954704	8.23219131657429	8.43557057714552	8.00426560495792	7.99967193365525	7.90683777546397	7.68304183308937	7.70686860056548	-0.439834900278087	0.0182050898395165	0.120194795444481
Merged-chr3-96300843-4	chr3	96300707	96300907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6838.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	7.44203184559363	7.36246832662348	7.43359239267497	7.84604041399946	7.29355059328271	7.46658604301111	7.60239832546501	7.51321958508732	-0.106262359476642	0.595245115171839	0.823817850531136
Merged-chr13-23517224-4	chr13	23517123	23517323	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Gly-GGY|tRNA|tRNA	-13821.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	4.94888609134887	4.63210924903786	4.65341627011084	4.60734354398517	5.09047289700908	4.94625282493154	4.63206161027857	4.94634162481306	0.438005896376819	0.200023470004715	0.501937971847898
Merged-chr7-12834986-10	chr7	12834910	12835110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001360576, exon 1 of 8)	5' UTR (NM_001360576, exon 1 of 8)	249.0	NM_001360576	65020.0	Mm.292297	NM_022981	ENSMUSG00000058638	Zfp110	2900024E01Rik|N28112|NRIF|Nrif1	zinc finger protein 110	protein-coding	6.47743714783844	6.10417744455009	6.37295285456689	6.07837170203281	6.56981061495293	6.65504142188052	7.07755376972963	6.52357767150126	0.68472482993544	0.00470960003159712	0.0454603499659685
Merged-chr12-110889812-4	chr12	110889700	110889900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027223)	promoter-TSS (NM_027223)	536.0	NM_001081057	104859.0	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	6.5760095334893	6.42350284058306	6.72688643310845	6.75409237322294	6.46527708528384	6.4899374124649	6.59028024809693	6.63455916216856	-0.130462308033973	0.540046948959342	0.792463821677907
Merged-chr11-82991167-2	chr11	82991067	82991267	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172796, intron 1 of 4)	intron (NM_172796, intron 1 of 4)	663.0	NM_172796	237886.0	Mm.270253	NM_172796	ENSMUSG00000069793	Slfn9	9830137M10Rik	schlafen 9	protein-coding	3.3592030295217	3.28021123901038	3.41197018552731	3.04389164576894	3.5369857196383	3.10108661295598	3.17730693079453	3.12472575773928	-0.0554511692945044	0.923411934907112	0.971668412789802
Merged-chr17-24960362-1	chr17	24960262	24960462	+	1000.0	f1_c57bl6.idr	TTS (NM_020608)	TTS (NM_020608)	261.0	NM_198937	52009.0	Mm.371601	NM_198937	ENSMUSG00000024165	Jpt2	2810430B18Rik|AL022629|C16orf34|D17Ertd441e|Hn1l	Jupiter microtubule associated homolog 2	protein-coding	4.00775181959363	4.16862509747954	3.95721646469032	4.2328566509881	4.30075517360057	4.18067476648522	3.9918274856349	4.00601581835679	0.0646056354445662	0.877561451312374	0.954199567096042
Merged-chr16-17111128-4	chr16	17111033	17111233	+	985.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252445, intron 1 of 19)	CpG	119.0	NM_001252445	66053.0	Mm.253614	NM_144954	ENSMUSG00000022771	Ppil2	0610009L05Rik|1700016N17Rik|4921520K19Rik|4930511F14Rik|AA589416|C130078A06Rik|CYC4	peptidylprolyl isomerase (cyclophilin)-like 2	protein-coding	4.91778369904212	4.66651372810716	5.04753128150986	4.80559012440826	4.47953633781397	4.91081732289187	4.71421864722861	4.94872076530403	-0.195631487636969	0.576233430959429	0.813448879105573
Merged-chr6-134425665-4	chr6	134425551	134425751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355686, intron 2 of 5)	intron (NM_001355686, intron 2 of 5)	11223.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	7.18817873034436	6.96410644523972	6.84416081628554	7.29092546863968	6.7366539813914	6.80655078377406	7.43977128144935	6.81060901958394	-0.152873312752834	0.525651179889317	0.783367294725902
Merged-chr4-3967734-4	chr4	3967637	3967837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28313.0	NR_104356	66433.0	Mm.27406	NM_181391	ENSMUSG00000042198	Chchd7	1810049H20Rik	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding	5.86637073023083	6.06590521993236	5.8435000169599	6.01107844147182	6.19899378912462	5.97052386451874	5.86092045663497	5.76491405856876	0.0221382551725872	0.930031319835665	0.974727857709636
Merged-chr2-144004943-4	chr2	144004845	144005045	+	981.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	6318.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	4.93387450345501	5.16167455431721	5.16768106328851	5.13844117632955	4.93516930485507	5.03528974133585	5.08039569237316	4.89440493859843	-0.237475912174644	0.439978716658965	0.727500359972934
Merged-chr16-65472680-4	chr16	65472572	65472772	+	884.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47957.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	4.71282702932489	4.67048689017358	4.3657787699239	4.60988196734458	4.79020422565187	5.1246254074607	4.57271429504782	4.74800172905554	0.467919344908669	0.189244585240269	0.488105240889121
Merged-chr5-62853435-4	chr5	62853350	62853550	+	816.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 7 of 8)	intron (NM_001170705, intron 7 of 8)	39627.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	5.67618032578776	5.44079345075451	5.8815312550902	6.21393942690795	4.50560736740367	4.45622528088706	4.57217349322731	4.53901531254643	-2.58283825803973	7.51898102851156e-13	8.19591961146132e-11
Merged-chr11-70764448-4	chr11	70764319	70764519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177565)	promoter-TSS (NM_177565)	-28.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	5.11855387429235	5.36831630007612	5.37315249241412	5.35608438218514	5.33131979349753	5.57343718984957	5.28783643363355	5.34025627266104	0.125205367960049	0.660595076016777	0.858992355066736
Merged-chr16-87636019-4	chr16	87635929	87636129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62925.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	6.24790317109492	6.20868731211317	6.26661935476341	6.31881888791248	5.97456062890874	5.768334826148	5.61817086868561	5.45933765925711	-0.838203256471437	0.00103775324691398	0.0138518099717532
Merged-chr5-3309417-3	chr5	3309330	3309530	+	868.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34463.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	3.76429957579835	3.03819369134054	3.37789104862931	3.47068984664063	2.98486248060104	3.43529036349028	3.41914070627174	3.31832017226813	-0.486027946791386	0.413303304774481	0.70829960828581
Merged-chr13-37954490-4	chr13	37954396	37954596	+	878.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39712.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	4.46394629014918	4.77320564697671	5.00449278172123	4.51258125176925	4.48030347134732	4.50233275944093	4.79198751047113	4.4618500063658	-0.289397719248894	0.441021308565514	0.728373839212601
Merged-chr4-133613775-4	chr4	133613672	133613872	+	950.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 4 of 7)	intron (NM_001017968, intron 4 of 7)	-11604.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	5.10990652446987	4.7197318451791	5.82514507263342	5.30423130541714	4.59452453449422	4.66824853572326	4.64770980528583	4.52857896295621	-1.37315235157657	0.000410540434326197	0.00657557551190468
Merged-chr6-17694446-8	chr6	17694241	17694441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001289626, exon 1 of 15)	exon (NM_001289626, exon 1 of 15)	347.0	NM_001289625	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	5.78114155270292	5.70699603249038	5.99026050539204	5.76713376618625	6.09434089043168	6.14320890472433	5.9596519286637	5.89776679784891	0.351270348817537	0.149440633680154	0.4316978435357
Merged-chr6-93757576-4	chr6	93757459	93757659	+	936.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029850, intron 9 of 23)	intron (NM_001029850, intron 9 of 23)	155404.0	NR_104594	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	5.74534161047435	5.95537899128856	6.091959936018	6.31272533265813	4.95175725186931	5.06735706763344	5.276348654555	4.87494442786724	-1.75984159821544	5.21478932035884e-09	2.92270463806159e-07
Merged-chr5-115051021-2	chr5	115050932	115051132	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029012, intron 1 of 10)	intron (NM_029012, intron 1 of 10)	39508.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	2.80562668127585	2.85169641466685	2.73101990199024	2.7507117987018	3.62996792753348	3.05602896440327	3.27555932896444	3.06863914590085	2.07040265688535	0.00078324419140869	0.0110506517939106
Merged-chr14-19950952-4	chr14	19950836	19951036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285909, intron 3 of 5)	ORR1C1|LTR|ERVL-MaLR	25757.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	7.0495183655913	6.69841542890733	6.70914840818494	7.19984819274621	6.68197742085609	6.63773504344218	6.67497906388183	6.77766636942172	-0.356044161601876	0.10612177556968	0.358945156019496
Merged-chr11-22759899-4	chr11	22759793	22759993	+	902.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99842.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	4.38338974622807	4.56135372644396	4.30239642876715	4.16214238492246	4.21393750911444	4.09047397232644	4.15092327433034	3.79017447477385	-0.696207469084865	0.102668516747107	0.351935378803134
Merged-chr10-94505536-4	chr10	94505468	94505668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-9289.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.84211123796226	5.95056040336583	6.58127327510973	6.32590323344815	5.75839504807809	6.04552667520993	5.93233181358879	6.1683249863664	-0.364110579321509	0.187603957139324	0.486046220470858
Merged-chr2-52988063-4	chr2	52987948	52988148	+	937.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	130180.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	4.33232048545575	4.72454813031496	4.50099727044296	4.59925824322214	4.46748613145186	4.36727741404392	3.95906881146083	4.23741790937501	-0.638070143556789	0.112873177327721	0.371420623567672
Merged-chr7-45898343-3	chr7	45898249	45898449	+	863.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144801, intron 2 of 7)	intron (NM_144801, intron 2 of 7)	1280.0	NM_144801	70209.0	Mm.163766	NM_144801	ENSMUSG00000002781	Tmem143	2310076O21Rik|AI481604	transmembrane protein 143	protein-coding	4.10307209252259	3.60667359637997	3.65258562111234	3.22958000764658	3.71307933273979	3.46712611756891	3.58306401540108	3.89571081821	-0.0111855513441516	0.983635774828127	0.994100000074476
Merged-chr3-81933591-3	chr3	81933483	81933683	+	694.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177662, intron 1 of 7)	intron (NM_177662, intron 1 of 7)	982.0	NM_177662	229445.0	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	3.73812977626857	3.45432612386195	3.73869782427472	3.61768505510492	3.48504772470803	3.75837491914321	3.14030975468914	3.5857337443094	-0.421623607933022	0.425161143409116	0.716745286615087
Merged-chr16-44833344-3	chr16	44833230	44833430	+	870.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_207244, exon 4 of 6)	exon (NM_207244, exon 4 of 6)	12602.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	3.266512923383	3.16274092656288	3.3305618928324	3.0791457521345	3.98824445744829	3.62365189707928	3.4357617994512	3.70425649445777	1.72871891479147	0.000853887562937206	0.0118523523483439
Merged-chr3-87408370-4	chr3	87408261	87408461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27421.0	NM_001113238	329693.0	Mm.331122	NM_183222	ENSMUSG00000048031	Fcrl5	Fcrh3|mBXMH2	Fc receptor-like 5	protein-coding	5.73613002666356	5.65396714538649	5.58526139579828	5.50467714167702	5.98818722244518	5.46224940837517	5.50260759170845	5.60792583223879	0.101145242129967	0.719385753490098	0.887930196082258
Merged-chr16-4969627-4	chr16	4969526	4969726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073370, intron 4 of 8)	intron (NR_073370, intron 4 of 8)	5338.0	NM_001271586	74684.0	Mm.374835	NM_001271586	ENSMUSG00000022543	4930451G09Rik	-	RIKEN cDNA 4930451G09 gene	protein-coding	5.60684103198384	5.68828822624949	5.93251500417732	6.10918189919422	5.14984284693989	5.27766354016018	5.68038412712079	5.52197079146	-0.755608899095753	0.0109846714806664	0.0843996039855734
Merged-chr6-137558994-4	chr6	137558891	137559091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	12018.0	NM_001271595	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	6.92961311083207	6.76095179733908	7.48984649352869	7.51837908896688	6.8528912919828	6.72437174131372	6.98513958228817	6.93913854180055	-0.478152577885515	0.04859851716685	0.227593516245754
Merged-chr16-30948423-4	chr16	30948292	30948492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	133040.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	6.85476867269953	7.0527993893542	6.33684758621298	6.45602287844763	6.20166345373109	6.55120697522214	6.30433217133542	6.12784084380265	-0.589923773259729	0.0224971191724069	0.138580663670527
Merged-chr18-73763096-2	chr18	73762996	73763196	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-8617.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	2.89411058858593	3.15125121258273	3.0212229043337	2.41905233068077	2.90024533956607	3.07177802304804	3.06772360942211	3.13499666875692	0.595280377002581	0.3880931564864	0.688846544177653
Merged-chr2-22795569-4	chr2	22795476	22795676	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	RLTR13C1|LTR|ERVK	21249.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	5.30804755656533	5.62791338433414	5.401882905482	4.61232892106505	5.68305442526633	6.00158227378308	5.71128737032475	5.42758739663738	0.762215942329739	0.0286558589489492	0.162587131069853
Merged-chr10-122039774-4	chr10	122039699	122039899	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 1 of 21)	L1M5|LINE|L1	7516.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	5.44447156331378	5.41917325903593	5.88869462368811	6.05423887505744	5.68528181182509	5.25414120197632	5.32725373044897	5.47074818839228	-0.493613288893803	0.114315558741487	0.373902543684419
Merged-chr16-70386369-4	chr16	70386296	70386496	+	984.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 2 of 15)	MLTR14|LTR|ERV1	72447.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	4.58462099822337	4.03737149000337	4.58535510645501	4.44735726820977	4.97679555931343	4.9891805113367	4.82796077824729	5.03902634579817	1.12089916774637	0.00181505576522569	0.0216754306216854
Merged-chr16-94521223-2	chr16	94521123	94521323	+	752.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 1 of 7)	intron (NM_007834, intron 1 of 7)	5406.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	3.22877235097192	3.06293742143463	3.11240205110983	3.11963555862708	3.14349810339831	2.87242125264664	3.21652509147372	3.47908059292389	0.250360975458349	0.66660292935092	0.862079457770231
Merged-chr5-113016218-4	chr5	113016116	113016316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177078)	promoter-TSS (NM_177078)	-678.0	NM_177078	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	5.89509741345468	6.17913453232716	5.75046630856354	5.48732914672839	5.9965851941687	6.0715065801054	6.20359022437944	5.63923608138576	0.243394967488504	0.396820782301135	0.695440267472917
Merged-chr10-39771844-3	chr10	39771750	39771950	+	900.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011264, intron 1 of 31)	intron (NM_011264, intron 1 of 31)	39690.0	NM_011264	19714.0	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	3.27565215747536	3.29126191251885	3.62965359433516	3.52500461419113	3.66884225018335	3.45722034375056	3.45148508465518	4.09555431689967	0.797993717381299	0.136002447114447	0.410445753226738
Merged-chr1-170907932-4	chr1	170907800	170908000	+	802.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001029984, exon 5 of 6)	exon (NM_001029984, exon 5 of 6)	5041.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	3.57980096430219	3.49249834301274	4.13731353609353	3.55486148430005	3.56507160749613	3.32412418550797	3.20036891194824	3.57826398392596	-0.911571219477414	0.102087552200426	0.350783967080574
Merged-chr5-34170931-4	chr5	34170809	34171009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1383.0	NM_001289803	272158.0	Mm.319286	NM_181857	ENSMUSG00000045102	Poln	POL4P	DNA polymerase N	protein-coding	5.80326970315445	5.95990847268812	5.54256857131632	5.77278953124703	5.76830441025146	6.11043028129669	5.54362397991371	5.82368729021563	0.0687143386881126	0.799469093723267	0.922568099838429
Merged-chr14-103481764-4	chr14	103481659	103481859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31582.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	7.00213924322	6.96842201291092	7.40316706282664	7.59981764254409	6.84571509247444	6.81559057590322	6.99307886676215	7.14250043851309	-0.451511823603698	0.0478823310656609	0.225698948412727
Merged-chr1-177711561-4	chr1	177711472	177711672	+	937.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-18242.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	4.84258345303845	4.77744670646964	4.48080065062845	4.35133027415641	4.61940824714732	5.08253898451675	4.81989504968262	4.90833793828298	0.514810350133023	0.157817315746316	0.444583002236396
Merged-chr15-41832406-5	chr15	41832320	41832520	+	999.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130164, intron 1 of 5)	intron (NM_001130164, intron 1 of 5)	1462.0	NM_001130164	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	5.36590884136668	5.3312874459623	6.15186272481568	5.6995616860499	5.31527965827591	5.06998275737059	5.51304759947031	5.78281475258585	-0.39828365390964	0.238700675353369	0.549054538941201
Merged-chr14-73441353-4	chr14	73441258	73441458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56069.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	6.27439904371466	5.59525695254899	6.25816614413582	6.23499921262295	5.68242965095856	5.73005625805462	5.9552884813299	5.95975445429902	-0.455264698223073	0.0998981700217439	0.346710425599685
Merged-chr5-145119666-4	chr5	145119571	145119771	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	intron (NM_023142, intron 1 of 9)	5415.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	4.0172436174643	4.40648464052804	4.20894084321243	3.50891528522829	4.3759919719483	4.46552534069667	3.94896911509698	4.0658295834502	0.400792945255385	0.411876552399852	0.707233761688396
Merged-chr2-132602816-4	chr2	132602705	132602905	+	841.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 1 of 3)	MTD|LTR|ERVL-MaLR	4609.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	4.44350128864649	3.94418619628718	4.10514826591131	4.56512864558404	4.15334789706708	3.83327975737973	4.03878743710968	4.36478532837171	-0.463343080100872	0.305998327788872	0.618505039718418
Merged-chr5-32077355-4	chr5	32077275	32077475	+	752.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 11 of 11)	intron (NM_144541, intron 11 of 11)	-59097.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	4.25160110558021	4.3331810848481	4.29636584185514	4.56031066151614	4.2015988071304	3.89066939093248	4.14154076340599	4.45595688670996	-0.458706483451742	0.269067572459306	0.580620459637407
Merged-chr11-106255969-6	chr11	106255875	106256075	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008950)	promoter-TSS (NM_008950)	109.0	NM_025310	56095.0	Mm.29795	NM_025310	ENSMUSG00000020706	Ftsj3	AA537063|AU045295|C79843|D11Ertd400e|Epcs3	FtsJ RNA methyltransferase homolog 3 (E. coli)	protein-coding	4.40840579241472	4.88999848070631	5.04570420941374	4.73460861180492	4.4905434341454	5.12410648546687	4.18347280085765	4.66821169089824	-0.276999580788101	0.5041500446697	0.770626277304553
Merged-chr16-38455526-4	chr16	38455437	38455637	+	925.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2848.0	NM_007414	11544.0	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	4.18339020242192	4.42080644529481	4.138160503711	4.01860505837718	4.14017358330731	4.11309731899639	4.20937049588943	4.03886807704042	-0.161382627889921	0.694583255833114	0.876020808682138
Merged-chr18-73623273-4	chr18	73623186	73623386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	50581.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	5.54461094139197	5.59493767704449	5.70670713995949	5.90017898051902	5.75827778041189	5.72210430531731	6.0063917189157	5.62473216087765	0.123743698733819	0.644931891516752	0.850573912153132
Merged-chr15-73422989-8	chr15	73422901	73423101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358046, intron 1 of 34)	CpG	190.0	NM_007982	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	5.20090926510812	5.14200350943333	5.07674297273411	4.70810133370257	5.19075990873851	4.96049778772989	5.05195279178292	5.07327729538232	0.0987375307733688	0.762660107880408	0.907011913026374
Merged-chr14-34297166-4	chr14	34297054	34297254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153399, intron 2 of 11)	intron (NR_153399, intron 2 of 11)	13363.0	NR_153399	75698.0	Mm.45406	NM_029389	ENSMUSG00000041471	Fam35a	3110001K24Rik	family with sequence similarity 35, member A	protein-coding	5.89880162766747	5.81362233199387	5.75969016420798	5.87614592680321	5.71363665818762	5.85915214568814	5.45782252298394	6.02157247994794	-0.105941435574289	0.686353479093575	0.871787672169905
Merged-chr2-32960467-4	chr2	32960379	32960579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199302, intron 1 of 24)	MIRb|SINE|MIR	776.0	NM_199302	227738.0	Mm.248037	NM_199302	ENSMUSG00000026792	Lrsam1	-	leucine rich repeat and sterile alpha motif containing 1	protein-coding	6.01973236515044	5.65656302352895	5.80249878268323	6.05209567173483	5.37992038654876	5.71637063874971	5.56767573354414	6.09406472911413	-0.311882383967096	0.282265324566001	0.594454214370181
Merged-chr6-134997083-4	chr6	134996964	134997164	+	833.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14548.0	NM_026360	67755.0	Mm.166524	NM_026360	ENSMUSG00000030204	Ddx47	4930588A18Rik|C77285	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding	4.38661066811588	4.23594915277736	3.89339377452771	3.94078425619784	4.40118537979656	4.63629780460162	4.36691986520986	4.34274781162812	0.778088963791267	0.0548392006969681	0.24461988258504
Merged-chr5-110108265-4	chr5	110108171	110108371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145147)	promoter-TSS (NM_145147)	-74.0	NM_145147	107999.0	Mm.86267	NM_145147	ENSMUSG00000033434	Gtpbp6	AV119224|Pgbpll|pgpl	GTP binding protein 6 (putative)	protein-coding	7.81761305042708	8.19735845544847	7.80298646792936	7.74619575912309	8.24535662437325	8.32839238519364	8.42140193898534	7.96965726408787	0.448701267552983	0.0174013456018389	0.116509300968233
Merged-chr2-34776065-4	chr2	34775977	34776177	+	846.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022310, exon 8 of 8)	exon (NM_022310, exon 8 of 8)	3987.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	4.13655253247664	3.92565511852186	3.72790781348969	3.80370642814583	4.10300337035177	4.2173333303373	4.11855130276385	4.0900399212384	0.621425537136232	0.140604308057594	0.417020460987187
Merged-chr14-60636332-4	chr14	60636237	60636437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033272, intron 1 of 12)	intron (NM_001033272, intron 1 of 12)	1632.0	NM_001033272	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	6.16318384600284	5.8124327091408	6.3716412768329	6.4677984603111	6.14673898435751	6.43849207585876	6.24940554766984	6.51433436093959	0.151708449749344	0.556548942773551	0.802142250793314
Merged-chr10-127738323-2	chr10	127738223	127738423	+	898.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1215.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	3.48620433122551	3.34862969332239	2.97924446700816	2.99136100296724	3.24313452825338	3.75708925939271	3.30514858969608	3.67970652676842	1.03046783755372	0.0766063960981003	0.299109526487476
Merged-chr6-72345874-4	chr6	72345777	72345977	+	788.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138592)	promoter-TSS (NM_138592)	-702.0	NM_138592	28035.0	Mm.281900	NM_138592	ENSMUSG00000056305	Usp39	AA408960|AI894154|CGI-21|D6Wsu157e|SAD1	ubiquitin specific peptidase 39	protein-coding	3.6070570605646	3.74256653094728	3.8938570064634	3.63084379156931	3.98525999983458	4.06859143261022	4.109775637899	4.42898655154956	1.20690313923653	0.00612507291132265	0.0550962422286156
Merged-chr13-94098542-4	chr13	94098458	94098658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 1 of 3)	intron (NM_172589, intron 1 of 3)	40762.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	6.64416741592534	7.06901417006949	6.97210591955139	6.78644884087587	6.95775129787497	7.03071901635104	6.74899721979461	7.00413605077697	0.0892231292880475	0.665207523936711	0.861320791391846
Merged-chr3-107332597-2	chr3	107332497	107332697	+	677.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001045807, exon 1 of 2)	exon (NM_001045807, exon 1 of 2)	692.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	4.41911456047934	4.27098870142585	4.18954010792148	4.24689808303176	4.56318480677384	4.81860177142482	4.22074008921745	4.45843254717069	0.580480513299131	0.131912983110303	0.404316091182819
Merged-chr10-60389705-4	chr10	60389575	60389775	+	893.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 30 of 68)	intron (NM_001252635, intron 30 of 68)	-10051.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	5.18580115934826	4.85951501346188	5.565716429978	5.48309404304383	4.35375637377622	4.41998186469701	4.93668802812026	4.84734877292342	-1.28669347078799	0.000713498933228023	0.0102761569392735
Merged-chr1-170589822-4	chr1	170589734	170589934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109985)	promoter-TSS (NM_001109985)	15.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	5.80834764000423	6.05656981979822	5.85617337728716	5.74102474461008	5.50581109200364	6.05328052687663	6.01648607931341	5.38610113386044	-0.164956909876135	0.567963632937359	0.808396157268658
Merged-chr17-37083527-4	chr17	37083422	37083622	+	978.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2714.0	NM_146477	258469.0	Mm.271392	NM_146477	ENSMUSG00000056600	Olfr90	MOR256-21|bM573K1.2	olfactory receptor 90	protein-coding	4.66856836423498	5.29145565012914	5.33949385271702	5.26984428795897	5.63043419857903	5.11239318497571	5.52439233443248	5.33576299716385	0.444731129709268	0.177054683940378	0.472289587325445
Merged-chr13-30698096-4	chr13	30698002	30698202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 4 of 7)	intron (NM_134068, intron 4 of 7)	38043.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	5.84753193690561	5.41253479257972	5.0589090275491	5.30463427235286	5.47049860954233	4.86758588336562	5.32492077650188	5.09148006014268	-0.382626338810195	0.263593306065847	0.575672187422095
Merged-chr16-57389839-4	chr16	57389731	57389931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	36554.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.48923022516563	6.57005590829645	6.80483532951199	6.81248906684006	6.41293290356497	6.48519372564247	6.45722052908206	6.51930192403607	-0.318535525657579	0.135155373944704	0.409284167709428
Merged-chr15-98567824-4	chr15	98567720	98567920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009833)	promoter-TSS (NM_009833)	-184.0	NM_009833	12455.0	Mm.29941	NM_009833	ENSMUSG00000011960	Ccnt1	2810478G24Rik|AI115585|CycT1	cyclin T1	protein-coding	8.11480043244866	8.44482092463447	8.14144990620413	7.7198982427901	8.35950804258015	8.6285943112476	8.04528080419771	8.28357178765637	0.280073157479383	0.184293325446494	0.481633683354282
Merged-chr19-6518782-4	chr19	6518677	6518877	+	961.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 21 of 22)	intron (NM_001205234, intron 21 of 22)	24293.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	4.64625703217744	4.59756069217725	4.55713738373912	4.55496323547684	5.08488570407228	5.05955316539257	5.02880657367368	5.4977848980387	1.18424230938516	0.000324197257713411	0.00540422402969154
Merged-chr8-27030540-4	chr8	27030431	27030631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153592, intron 6 of 11)	MTD|LTR|ERVL-MaLR	6732.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	7.43959704399009	7.49177319416818	7.77407231267021	7.70830635498787	7.24934040227902	7.06441567089363	7.32543527182861	7.23981407264263	-0.520681117611971	0.00503170377345527	0.0477790345371895
Merged-chr4-62286503-4	chr4	62286407	62286607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025286)	promoter-TSS (NM_025286)	78.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	6.91409716174654	7.05392606506754	7.17809032012195	6.73685799196799	6.98184399585823	7.16907141424737	6.82619977898449	6.91041352222422	0.0100069567846179	0.961760706279715	0.986287517870095
Merged-chr13-23762584-7	chr13	23762470	23762670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013550)	promoter-TSS (NM_013550)	-184.0	NM_013550	360198.0	Mm.221301	NM_013550	ENSMUSG00000069265	Hist1h3a	-	histone cluster 1, H3a	protein-coding	5.92518734187608	5.667245852684	6.24785982177145	5.5507606297349	6.03283154529651	6.03227825380755	6.10516440659982	6.2782973815731	0.407409147465669	0.134903813933377	0.408839148894254
Merged-chr14-29973373-3	chr14	29973277	29973477	+	709.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019979, exon 4 of 5)	exon (NM_019979, exon 4 of 5)	-4960.0	NM_027493	56249.0	Mm.215110	NM_027493	ENSMUSG00000015971	Actr8	5730542K05Rik|ARP8	ARP8 actin-related protein 8	protein-coding	3.41836351454829	3.52046958589387	3.5275983511788	3.16652848113486	3.40970137961012	3.88663983270999	3.22565850247519	3.09892609660479	0.0914992234492214	0.874182362194273	0.952832392676241
Merged-chr11-76033595-3	chr11	76033486	76033686	+	724.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5804.0	NM_029658	76566.0	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	3.27460371429119	3.29514991706605	3.21819446746055	3.43879233169366	2.9405271457653	3.26973122722263	2.95411071492033	3.32758378765955	-0.718437538120454	0.215036244019811	0.52102205171005
Merged-chr3-122474295-1	chr3	122474195	122474395	+	588.666687	f0_balb.idr	intron (NM_013867, intron 3 of 11)	intron (NM_013867, intron 3 of 11)	-9274.0	NM_001355264	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	3.3098438787916	3.03989612898316	3.10497979310338	3.15664341103724	2.8216681972758	2.74581025667048	2.85114679178413	2.9242259725482	-1.42784685632248	0.0223898484494908	0.138077198300668
Merged-chr13-102658603-3	chr13	102658504	102658704	+	973.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34943.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	3.25736433457258	3.2166672868814	3.17830984007106	2.56575247325786	4.18257149436354	4.74104938201952	4.09147135898571	4.15150054114563	4.59538468031163	1.60233802766727e-12	1.65293939813519e-10
Merged-chr19-12436328-4	chr19	12436253	12436453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	8448.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	7.68492566654348	7.53017789213274	7.68622461285157	7.77800034129649	7.11508152255642	7.31353761831145	7.43266611808837	7.34548470229847	-0.501674476166939	0.00541975960807555	0.050427852175583
Merged-chr11-55458818-3	chr11	55458739	55458939	+	868.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	2369.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	3.65259634884987	3.67166138733217	3.43970995584957	3.43088067670272	3.3899255848523	3.6675039229918	3.3071320353638	3.54884861243808	-0.223080001066627	0.660172917885707	0.858753368191481
Merged-chr19-36554449-2	chr19	36554342	36554542	+	692.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172637)	promoter-TSS (NM_172637)	-197.0	NM_001163471	226098.0	Mm.61107	NM_172637	ENSMUSG00000041180	Hectd2	4921524L07|A630025O09Rik|AW212605	HECT domain E3 ubiquitin protein ligase 2	protein-coding	3.04396281476069	3.52580182764427	3.10475855362023	3.06700697341726	2.79047698809143	2.87879238501661	2.9054963018069	3.21587399047761	-1.01521265204885	0.109324316322488	0.365153157665133
Merged-chr2-139919073-4	chr2	139918978	139919178	+	951.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110352, intron 9 of 12)	Lx8|LINE|L1	147727.0	NM_001159640	75812.0	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	4.83983319248267	5.00081830443318	4.76512423166965	4.87794727359443	5.08846485580808	4.73280780524442	4.92217217467379	4.68191161117031	0.00634352479162793	0.98483905390652	0.994465300298087
Merged-chr1-134557081-4	chr1	134556972	134557172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3106.0	NM_152895	75605.0	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	7.41841581984267	7.51916962684024	7.21901737346735	7.3146539638198	7.5047676566945	7.6160889478143	7.60509894280332	7.33396605327987	0.196410182955631	0.278819630514967	0.591009603347969
Merged-chr6-38823990-4	chr6	38823883	38824083	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	13328.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	5.49650805529241	4.78164919270353	5.54758973451211	5.77819412962111	5.14523509973799	5.18191487304861	4.90239029799964	5.23963400617709	-0.613491273236155	0.081634541472955	0.31005095926063
Merged-chr16-58524618-4	chr16	58524519	58524719	+	873.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357435)	promoter-TSS (NM_001357435)	-366.0	NM_001357434	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	5.03111458051803	4.71368343816432	4.72045224656314	5.32633993904999	4.55741717389043	4.38507373261059	4.8449211161794	4.67757827763241	-0.755072265557052	0.0452122586412124	0.217575388831131
Merged-chr18-60775324-3	chr18	60775219	60775419	+	912.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020600, intron 1 of 4)	intron (NM_020600, intron 1 of 4)	723.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	3.16406149274079	3.49100261422307	3.5318330199703	3.46548848972855	3.3719320493251	3.59324639536621	3.4636853980427	3.81508393104764	0.471869615866292	0.36565828467725	0.670371952222588
Merged-chr18-64958314-4	chr18	64958237	64958437	+	976.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-65190.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	4.75724273235084	4.62652300270053	4.62629789878107	4.73426814064495	5.52697435126286	5.2937800607127	5.32352254842627	5.17859840958201	1.25267013206897	5.8333071409752e-05	0.00129067133661011
Merged-chr17-64622481-4	chr17	64622360	64622560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	20811.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	7.84319172288543	7.90199636276799	7.82163524716352	7.88483579131431	8.06409411003822	7.91155345296796	8.05193754161072	7.80863339996855	0.132256119371474	0.414018307432233	0.708838812152508
Merged-chr8-54529541-4	chr8	54529435	54529635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029701, intron 1 of 4)	CpG	463.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	6.96625720837482	7.1968975988027	7.57669237369783	7.71306213262881	7.26773892551766	7.18623257707176	7.69013826818717	7.1769280223777	-0.0780015892710976	0.742911903886868	0.898691548174051
Merged-chr14-77878053-5	chr14	77877944	77878144	+	949.8666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3127.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	5.54282489738871	5.78418388980564	5.88748022399345	5.82209596106119	6.64928156985475	6.74702212496049	6.67636564332261	6.49192096666715	1.31552681892377	1.09049420450028e-08	5.74114548684359e-07
Merged-chr3-96770166-4	chr3	96770053	96770253	+	928.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026406, intron 3 of 8)	CT-rich|Low_complexity|Low_complexity	42542.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	4.89588679581665	4.34710738795468	5.09142098217946	4.56424165323876	5.23763995731492	4.84413043200466	4.60298049337107	5.0878564589563	0.459936548790031	0.231382064819463	0.540889487069676
Merged-chr19-8763519-4	chr19	8763432	8763632	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016813, intron 3 of 20)	intron (NM_016813, intron 3 of 20)	6415.0	NM_001276704	53319.0	Mm.7271	NM_016813	ENSMUSG00000010097	Nxf1	Mex67|Mvb1|Tap	nuclear RNA export factor 1	protein-coding	5.41483597637803	5.2611569296743	5.03987559232724	5.6816947690079	5.34951851450873	5.3199751943492	4.94149267546471	5.03650355604823	-0.381207394285063	0.245089499809855	0.556182666166093
Merged-chr8-109565757-4	chr8	109565653	109565853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175646)	promoter-TSS (NM_175646)	108.0	NR_151644	64340.0	Mm.23705	NM_178380	ENSMUSG00000037993	Dhx38	5730550P09Rik|AI325984|AW540902|Ddx38|KIAA0224|Prp16	DEAH (Asp-Glu-Ala-His) box polypeptide 38	protein-coding	8.18469368850882	8.58461262713286	8.39602524987863	8.26178839154654	8.50220957512401	8.39429015509536	8.54968046817217	8.02275389015917	0.0259703870470543	0.88848739724563	0.958180162421076
Merged-chr16-38789174-4	chr16	38789068	38789268	+	852.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178924, intron 1 of 7)	intron (NM_178924, intron 1 of 7)	11035.0	NM_178924	22268.0	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	3.56981033232146	3.52053510413834	3.51809849706461	3.38571294441911	3.29439048730747	3.52155196070792	3.65258599239485	3.28366633571546	-0.173246612244006	0.735463523147722	0.895614414024255
Merged-chr11-113733753-4	chr11	113733658	113733858	+	815.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163346, intron 1 of 1)	intron (NM_001163346, intron 1 of 1)	17402.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	4.34823370978726	4.08703778615007	3.75847177206085	3.91120571175904	3.7387553868926	3.87915651764036	4.00134255254015	4.06265433759783	-0.319926129058838	0.482787725093644	0.757421686487144
Merged-chr4-32239473-4	chr4	32239349	32239549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-177986.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	6.06326007125718	6.03418948909941	6.72271264151087	6.49676042807937	5.86104266435381	5.75144683958126	6.09622417388597	6.33142018214354	-0.517209778653241	0.0659989319628023	0.273584518693628
Merged-chr9-99491248-3	chr9	99491158	99491358	+	908.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 18 of 21)	intron (NM_028768, intron 18 of 21)	20837.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	4.34158346663513	4.19679383956769	4.29923311821188	4.08263843706678	4.86072441286961	4.23724143915749	4.14291021393959	4.00361565708405	0.351142893805186	0.430420837872793	0.72105544538463
Merged-chr14-57826206-4	chr14	57826073	57826273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198605)	promoter-TSS (NM_198605)	-10.0	NM_198605	219114.0	Mm.30173	NM_198605	ENSMUSG00000021965	Ska3	F630043A04Rik	spindle and kinetochore associated complex subunit 3	protein-coding	6.79512022247914	6.76126837804619	6.62541026897223	7.06195846617593	7.08713113492728	6.9292936713251	7.17664397623945	7.12154120467502	0.339935353760416	0.0999876585028463	0.346850311641605
Merged-chr19-28010884-6	chr19	28010765	28010965	+	930.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166414, intron 1 of 18)	L1M4b|LINE|L1	301.0	NM_011265	19726.0	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	3.79834215323518	3.45658019873565	4.2993862272817	3.94417827633359	3.89773961654338	3.63172297770397	3.56328869223474	3.74454220726486	-0.540083393021079	0.29536390438542	0.607379595804165
Merged-chr12-9006318-4	chr12	9006210	9006410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172470, intron 14 of 27)	intron (NM_172470, intron 14 of 27)	-23687.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	5.97964593588865	6.20786828749223	5.96011687970408	6.02971418770306	5.39206415966248	5.28993978638859	5.57396569121274	5.45269115824606	-1.02910799278189	8.16157596962411e-05	0.00171013487177473
Merged-chr7-49794530-3	chr7	49794454	49794654	+	732.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133740, intron 8 of 15)	intron (NM_133740, intron 8 of 15)	16196.0	NM_133740	71974.0	Mm.33202	NM_133740	ENSMUSG00000030505	Prmt3	2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3	protein arginine N-methyltransferase 3	protein-coding	2.99425067969409	3.07531361398962	3.10326166374986	3.17761065869919	2.77846996270415	2.69919653568154	2.92599789818312	2.67277198848414	-1.52405974888567	0.019076003747788	0.123967029194175
Merged-chr6-89644551-4	chr6	89644450	89644650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153162, intron 1 of 15)	CpG	562.0	NM_001178059	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	7.91036632538443	8.13796738158586	8.14018221404626	7.94412223027596	7.75929278611023	7.66762161899694	7.92946956250018	7.83260671149829	-0.303073977568739	0.0710623829020291	0.285932131515863
Merged-chr13-91461978-4	chr13	91461882	91462082	+	953.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 1 of 15)	CpG	885.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	5.09892171402992	4.68789880219127	4.87116067053933	4.82664814909749	4.91556355929437	4.58445462800023	4.656787870165	5.18261100629025	-0.0257633103375175	0.941789633238873	0.97898049638905
Merged-chr4-8666860-4	chr4	8666763	8666963	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23543.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	4.93150007074406	4.65127119856646	4.78220594334869	4.90997108903876	5.30660697322609	5.06989823452727	4.94349729034053	5.15559029819318	0.60017977068252	0.0614869092285898	0.262392665324347
Merged-chr6-28261484-2	chr6	28261384	28261584	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081678, exon 1 of 6)	5' UTR (NM_001081678, exon 1 of 6)	117.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	4.73800158985687	4.93796158828126	4.99353956341651	4.73055091272992	5.32166783327701	4.95340826727392	4.83111250527071	4.60911911940115	0.24348348189091	0.492141104002409	0.763346782261791
Merged-chr5-151195526-4	chr5	151195445	151195645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5352.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	5.36724053675992	5.2875362925956	5.54491098721589	5.70445321761549	5.81513405886306	5.71977310808689	5.76420110209155	5.5948242006256	0.379826566760346	0.169147984590819	0.461676496267707
Merged-chr11-60707879-4	chr11	60707775	60707975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008502, intron 11 of 20)	intron (NM_008502, intron 11 of 20)	8185.0	NM_008502	16897.0	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	LLGL1 scribble cell polarity complex component	protein-coding	6.0066615513746	6.000947967942	5.83090089138025	6.01565812282598	5.70959786309467	5.71700448894424	5.89222950537451	5.67588216347963	-0.35738950490534	0.146569343767588	0.426967777286073
Merged-chr14-14703153-3	chr14	14703056	14703256	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001360516, exon 1 of 25)	5' UTR (NM_001360516, exon 1 of 25)	131.0	NM_001360509	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	6.66980451695726	6.73200454166449	7.24012937126706	6.91831529587567	6.52196202083227	6.78521723438279	6.24649643391231	6.72608267395332	-0.463659818128077	0.0512110663088911	0.234852940454904
Merged-chr4-132211669-4	chr4	132211567	132211767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145393, intron 1 of 4)	CpG-10406	589.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	4.93142621377713	5.13791222049381	5.22742051437828	4.67745379467324	4.96787349164961	4.78115734744645	5.04702054688129	5.55506662997763	0.232509127417094	0.518145260666236	0.779362628036693
Merged-chr13-59879392-4	chr13	59879305	59879505	+	938.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56258.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	4.48900310516169	4.25913181756181	4.44654684582423	4.07956630817737	4.86068947337472	4.22568469304447	4.86309372349907	4.9147991586364	0.971034721361379	0.0136667315925592	0.0983305658573511
Merged-chr12-51844693-1	chr12	51844593	51844793	+	729.0	f0_c57.idr	Intergenic	Intergenic	-15157.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	4.23338476898409	4.02107192439598	4.09709627448486	4.35593669549193	4.25610974166077	4.06587081699055	4.21517675702312	4.09468164323305	-0.0761348036093581	0.852234791703698	0.944363979741224
Merged-chr19-5661169-4	chr19	5661067	5661267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164568, intron 1 of 15)	intron (NM_001164568, intron 1 of 15)	2540.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	6.80876500015186	6.61122141195708	6.26627805679766	6.66657582033285	6.61155016459486	6.71912045870316	6.63455471695725	6.69337158527684	0.0788237272057154	0.716052446178741	0.886371813543908
Merged-chr4-149954300-4	chr4	149954208	149954408	+	860.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029035, intron 1 of 2)	CpG	698.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	4.14800013439075	3.80525751231864	4.19316596189589	3.92905889532444	4.15393080607518	4.22750830754368	4.08466604792693	4.27501857446111	0.436842949952387	0.291064223804611	0.603344993482101
Merged-chr3-87151664-4	chr3	87151558	87151758	+	968.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170985, intron 1 of 15)	intron (NM_001170985, intron 1 of 15)	23089.0	NM_001170985	170643.0	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kirre like nephrin family adhesion molecule 1	protein-coding	4.99544064514991	4.74148900509442	5.0619956076928	5.36146939673265	4.99765089253639	4.91197362214227	4.86758339672963	4.73215897705621	-0.37773260498347	0.271799634410887	0.583373825580694
Merged-chr5-32122560-4	chr5	32122448	32122648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13924.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	7.19043388616899	7.22584578070214	7.21271553116832	6.92580975627377	7.01317146050818	6.81929347690426	6.81777631155828	6.34186943050146	-0.497595952298123	0.0273334425379682	0.157535798089882
Merged-chr15-80219859-2	chr15	80219759	80219959	+	798.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14221.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	3.36807233861979	3.51481104990093	3.54842767373564	3.31013334640323	3.76701492860307	3.87609163118063	3.41878496904376	3.88857527873824	1.01180003745385	0.040166511156412	0.202307677441427
Merged-chr9-85749407-4	chr9	85749283	85749483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081282)	promoter-TSS (NM_001081282)	-49.0	NM_175371	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	7.62565546188144	7.63932534295651	7.40190531555601	7.56402773255028	7.7846465683054	7.80417416769108	7.65621962294553	7.68037857645705	0.22546670196783	0.180468821048517	0.476891812767323
Merged-chr17-46520789-4	chr17	46520740	46520940	+	910.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081335, exon 23 of 41)	exon (NM_001081335, exon 23 of 41)	24051.0	NM_207161	381101.0	Mm.35801	NM_207161	ENSMUSG00000040658	Dnph1	C76683|Rcl	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding	4.35845830678368	4.30653736278289	4.43577769179298	4.15910619362852	4.25699911951749	3.75720492819121	4.1263048517756	3.93992625591205	-0.676173784080761	0.119145501821231	0.38190374944411
Merged-chr8-69189105-4	chr8	69189002	69189202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-19944.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	5.01900770651348	5.25333590118111	5.0546761197056	4.98795903096771	5.21623429439644	5.04714109405003	5.33206054491525	5.21264207550917	0.246035222452188	0.412862294649919	0.707850594250086
Merged-chr13-90051866-3	chr13	90051762	90051962	+	786.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028012, intron 3 of 7)	RLTR18-int|LTR|ERVK	37746.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	3.41551907459866	3.09886309220619	3.1085278928887	3.25038891604902	3.05281758706796	2.88618444795356	2.84486843741358	2.92019066487246	-1.2205961245236	0.0460901768904592	0.220408207322975
Merged-chr17-33997071-1	chr17	33996971	33997171	+	736.0	f1_c57bl6.idr	exon (NM_001347346, exon 5 of 8)	exon (NM_001347346, exon 5 of 8)	3262.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	2.86487855658431	2.71162800258161	2.80048794967355	2.40592461654029	2.94601903819355	2.97620506685861	2.85466329272306	3.14611123460169	1.33022275307923	0.043828998381231	0.213240210237706
Merged-chr5-92349657-6	chr5	92349583	92349783	+	954.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021274)	promoter-TSS (NM_021274)	-794.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	4.73720750882852	4.87302980031494	4.14129180009534	3.86447399384397	4.8480875181237	5.20316667277923	4.23375616616832	4.93867436300821	0.795133376607716	0.0932330546026814	0.333999476247635
Merged-chr7-143107249-10	chr7	143107182	143107382	+	898.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008434)	promoter-TSS (NM_008434)	28.0	NM_008434	16535.0	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	4.11888410150265	3.58130457829485	4.11952964757984	3.69921290246383	4.13105426967038	3.94529893753391	4.18518305231513	4.11691882985853	0.570079058309169	0.208886282561062	0.51324523526683
Merged-chr17-83277603-7	chr17	83277445	83277645	+	972.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62262.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	5.0514726516901	5.43472916712605	4.66757857186544	4.47321917217307	5.21271328394347	5.3808222950846	4.64621291716371	5.14485757855279	0.317882731196674	0.425862032631171	0.717223493053412
Merged-chr18-3337588-8	chr18	3337511	3337711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110852)	promoter-TSS (NM_001110852)	-22.0	NM_001110852	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	8.50236066869464	8.51649647745813	8.66288160994083	8.52883561493495	8.25247394509256	8.64217500819687	8.20134987027841	8.22864448838471	-0.268266229717942	0.111013095907975	0.368126664964881
Merged-chr7-83062252-4	chr7	83062147	83062347	+	924.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86223.0	NM_177895	330578.0	Mm.5796	NM_177895	ENSMUSG00000053528	A530021J07Rik	-	Riken cDNA A530021J07 gene	protein-coding	4.26553997314169	4.52974464216617	4.48720155528614	4.30359155486521	4.34279549171531	4.39411060840977	4.6528850617343	4.56291356876334	0.21687168924985	0.561213097226179	0.804894831534649
Merged-chr4-5645233-4	chr4	5645131	5645331	+	895.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173426, intron 1 of 2)	intron (NM_173426, intron 1 of 2)	1141.0	NM_173426	242297.0	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	4.67977601612182	4.2028883513821	4.8254271323892	5.20762330935867	4.21289754358496	4.69333676372919	4.65833197219584	4.63853724730467	-0.498672681942428	0.24219569488574	0.552876667402331
Merged-chr11-69035993-4	chr11	69035898	69036098	+	990.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281465, intron 22 of 22)	intron (NM_001281465, intron 22 of 22)	-9639.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	5.07842556327739	5.4059402255576	4.93260715539352	4.95380246071158	5.16437889317761	5.55750375892583	5.4372254726472	5.0046508966186	0.370549829255868	0.25410381389949	0.565426265147923
Merged-chr18-20787240-4	chr18	20787130	20787330	+	934.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40826.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	5.50129855996139	5.58329440258186	6.30297816723729	6.04444235089884	4.75914555940688	5.13940051070864	5.4742276906521	5.21822633422491	-1.28023972311411	0.000174553620972244	0.00324739994437621
Merged-chr10-99619637-4	chr10	99619540	99619740	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038019, intron 1 of 2)	intron (NR_038019, intron 1 of 2)	10469.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	5.32390926953321	5.40728977391397	5.06918757656055	5.12412718695681	5.32985095918451	5.31289599324229	5.29831831522025	5.06578324309524	0.0491181046174127	0.868972564446665	0.950890741040292
Merged-chr15-3999356-4	chr15	3999262	3999462	+	846.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045740, intron 2 of 2)	RLTR17|LTR|ERVK	3323.0	NR_045740	328489.0	Mm.447020	NR_045740	ENSMUSG00000097662	Gm2093	100039196|A630020A06	predicted gene 2093	ncRNA	4.48557687023576	4.46673606537499	4.16400429576717	4.16811139422053	4.44976969119904	4.5753435704474	4.65256489838386	4.56227353792802	0.549906322244483	0.14082753906673	0.417400152957072
Merged-chr15-39735381-4	chr15	39735280	39735480	+	928.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10550.0	NM_001289506	75766.0	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	4.84872144003616	4.90677728041788	4.92099019636138	5.37215494635051	4.72979896049346	4.69615873185916	4.9643191042226	4.60473131904598	-0.59760361914106	0.0914609566392708	0.330476594322057
Merged-chr8-82398721-4	chr8	82398629	82398829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	3857.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	6.61947469540833	6.47030967543105	6.42354610262855	6.33445452300294	6.92275749391321	6.50869960866313	6.75631073783097	6.16394859542973	0.248381511222784	0.312214175599147	0.624121459403255
Merged-chr17-12770131-3	chr17	12770021	12770221	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010515)	promoter-TSS (NM_010515)	-415.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	4.72163427464824	4.98448982726848	4.47801869458948	4.29758088908334	4.69313125205388	4.81903638716736	4.58465687217045	4.60302348498509	0.0892870073455457	0.81480689789192	0.92854851400975
Merged-chr12-116434928-3	chr12	116434827	116435027	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133762, intron 17 of 28)	intron (NM_133762, intron 17 of 28)	29525.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	4.45762064922803	4.12267864745753	4.35442190656925	3.8622464936146	5.75559383837498	5.32354677860386	5.28740704370155	5.285225052767	2.59185328877848	4.64811731932813e-13	5.3482480480947e-11
Merged-chr15-81355585-3	chr15	81355466	81355666	+	731.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011399, intron 1 of 8)	B3|SINE|B2	5199.0	NM_011399	20524.0	Mm.222536	NM_011399	ENSMUSG00000022404	Slc25a17	34kDa|47kDa|PMP34|Pmp47	solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	protein-coding	3.24461291995269	2.96558851549847	3.36258555738446	3.17971950206986	3.44242560239599	3.53346675344138	3.34934949852433	3.56752993854835	1.00186456625308	0.0595257504654473	0.257144234797305
Merged-chr2-140718442-3	chr2	140718344	140718544	+	786.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	-46968.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	3.34534810749236	3.27416165578672	3.45188385432991	3.47761791782204	3.28315160279821	3.07130542380406	3.53401604814903	3.03377883865833	-0.519879031603284	0.357969938491461	0.66403775862185
Merged-chr9-21859750-3	chr9	21859645	21859845	+	887.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-7110.0	NM_177030	319899.0	Mm.128153	NM_177030	ENSMUSG00000032198	Dock6	2410095B20Rik|4931431C02Rik|C330023D02Rik|mKIAA1395	dedicator of cytokinesis 6	protein-coding	3.77199060258845	3.79666674078978	3.66674892420675	3.754470855134	3.60686543882002	3.83949735513922	3.98553883029774	3.60856631448882	0.046522938540628	0.920026646545648	0.970406583631903
Merged-chr7-19573345-4	chr7	19573219	19573419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027189)	promoter-TSS (NM_027189)	24.0	NM_027189	69731.0	Mm.24540	NM_027189	ENSMUSG00000044709	Gemin7	2400008I04Rik|AI120175|AI461688	gem nuclear organelle associated protein 7	protein-coding	5.5514244563149	5.82918016229304	5.78746086723199	5.46732246538552	5.68331107768072	5.88899460916081	5.70972838196552	6.07895811277853	0.308839157440704	0.2531941709784	0.564496269375165
Merged-chr4-123014159-4	chr4	123014060	123014260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2433.0	NM_025873	66966.0	Mm.235030	NM_025873	ENSMUSG00000028653	Trit1	2310075G14Rik|AI314189|AI314635|AV099619|IPPT|IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding	5.4971250365572	5.41062233947421	5.47011435068689	5.01683901695493	5.67864623001143	5.64495426601396	5.76295457071862	5.46627657193323	0.528363504931424	0.0685576471595434	0.279616363005337
Merged-chr5-105139621-4	chr5	105139514	105139714	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256005)	promoter-TSS (NM_001256005)	-28.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	5.24376245207187	4.85413661305283	4.7970942018869	3.89196880386006	5.53479813217594	5.13006952646718	5.30157276295877	5.3251679646679	1.05198965323214	0.0122878705423982	0.0914194248591148
Merged-chr9-113793324-4	chr9	113793265	113793465	+	902.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286603)	promoter-TSS (NM_001286603)	35.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	4.42620922561195	4.01207650389234	4.08830949804634	4.22143183430356	4.09037696539975	3.88031105401798	4.24954448338139	4.26624317291001	-0.165061290705228	0.694148662001513	0.875747666789658
Merged-chr10-130229813-3	chr10	130229711	130229911	+	714.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-18683.0	NM_146300	258297.0	Mm.377419	NM_146300	ENSMUSG00000045559	Olfr827	MOR210-5	olfactory receptor 827	protein-coding	3.26605178133758	3.10459424120313	3.32279191266541	3.34838646012105	3.34898737400125	3.31826238929478	3.25441843513637	3.26478325347663	0.111000303411587	0.833932262005785	0.936593156465434
Merged-chr9-83562466-4	chr9	83562379	83562579	+	959.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	14141.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	4.80843169953455	4.48769092086464	4.55046991365776	5.09994557932259	5.27860438339342	5.16449738664659	4.96705884352056	5.23372380494066	0.745593481099057	0.0374450524946764	0.193193780191256
Merged-chr2-129092371-4	chr2	129092273	129092473	+	773.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027192, intron 6 of 6)	intron (NM_027192, intron 6 of 6)	-8623.0	NM_009086	20017.0	Mm.259078	NM_009086	ENSMUSG00000027395	Polr1b	128kDa|D630020H17Rik|RPA116|RPA135|RPA2|Rpo1-2	polymerase (RNA) I polypeptide B	protein-coding	4.09215585918572	4.18023784288874	3.78911990334837	4.3794857104316	3.98563820601365	3.5864478268182	4.07477271139155	4.04443992945553	-0.533170398827415	0.257310885152413	0.56907882951226
Merged-chr2-180276081-4	chr2	180275974	180276174	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2609.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	5.89833431248022	5.54173859459577	5.36461916381547	5.61922971693503	5.15801312697219	5.27599970535611	5.50655701015133	5.26673613506692	-0.556092302895686	0.0574398339447277	0.251476807747065
Merged-chr4-126051801-4	chr4	126051717	126051917	+	902.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025544, intron 5 of 7)	intron (NM_025544, intron 5 of 7)	4889.0	NM_025544	66407.0	Mm.195628	NM_025544	ENSMUSG00000028861	Mrps15	1500003E24Rik|2410002B11Rik|Mprs15	mitochondrial ribosomal protein S15	protein-coding	4.25680177804861	4.31469838259097	4.21006888164359	4.4829827946477	4.29298058662476	4.23535297087964	4.28415259346837	4.71663518367843	0.147998618340692	0.709740739360062	0.883749144337518
Merged-chr2-137115519-3	chr2	137115438	137115638	+	970.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013822, exon 2 of 26)	exon (NM_013822, exon 2 of 26)	982.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	4.32290262540778	4.10182086568564	4.64606541730936	4.31213098730853	4.21768431208939	3.76007526941285	3.98282554132881	4.04838652953214	-0.846376111615069	0.0555942351070134	0.246812328365378
Merged-chr17-45623667-4	chr17	45623569	45623769	+	914.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-21567.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	5.43724883994776	5.30158662698252	4.6015464026356	4.77221729110561	5.48503580769342	5.52882624982292	5.43685403880036	5.3797231380803	0.717986153453535	0.0344889483948628	0.183721662759912
Merged-chr17-31855617-3	chr17	31855516	31855716	+	978.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010831, intron 1 of 13)	CpG-6228	188.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	4.63365379613263	4.32806516910542	4.76813211166513	4.29129722288616	4.29230490789865	4.61220918949821	4.14648730120047	4.39528962604179	-0.329824019913472	0.411746506654782	0.707123186245418
Merged-chr11-76525128-3	chr11	76525029	76525229	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198894, intron 1 of 22)	intron (NM_198894, intron 1 of 22)	-15710.0	NM_198018	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	3.66581183982604	3.78243113978567	3.43585701817198	3.65888437567029	3.7493835834822	3.72935691234457	3.88857056365536	3.49561589857956	0.243558788258639	0.611305026177967	0.832251855180034
Merged-chr1-191638931-4	chr1	191638837	191639037	+	800.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	63301.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	3.90324171426534	4.45618645738344	4.10153285133811	3.64016880473832	4.27943800627615	3.91499730441045	3.65833628163973	4.27003079910973	0.00612519645885819	0.990311219466913	0.996152503306016
Merged-chr8-105564939-4	chr8	105564790	105564990	+	979.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 1 of 7)	B2_Mm1t|SINE|B2	1174.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	5.12430892732378	5.09765661472142	4.64803408996169	4.63165131618818	5.13489453182867	4.82762470346057	4.93797082740453	5.26584719932202	0.336823736790854	0.33235491804512	0.643434879668289
Merged-chr15-25632366-4	chr15	25632292	25632492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	9842.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	5.67363152345612	5.76938266146529	6.15002540208959	5.92292923622576	5.63235603953641	5.77000909140691	5.69710686589645	5.61703206471095	-0.352803147712105	0.176879587232258	0.472123303693886
Merged-chr13-13394234-4	chr13	13394131	13394331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031999)	promoter-TSS (NM_031999)	-607.0	NM_031999	83924.0	Mm.379269	NM_031999	ENSMUSG00000021306	Gpr137b	AI788917|AU016435|AW546472|C730041E01|C80550|C80741|D13Abb1e|Tm7sf1	G protein-coupled receptor 137B	protein-coding	5.6731760138518	5.38349185194482	6.25292514729086	5.75269115029368	5.64842294035543	5.33092786009658	5.7187919327559	5.47894429633608	-0.403026817332848	0.191080983752505	0.490417410029363
Merged-chr7-141266108-1	chr7	141266008	141266208	+	1000.0	f0_balb.idr	intron (NM_001252601, intron 1 of 9)	intron (NM_001252601, intron 1 of 9)	316.0	NM_001252601	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	5.66767246395181	5.67339438351943	5.77188650973471	5.39813334573395	6.19119032134982	5.9720881675312	5.7669021568587	6.20299392367458	0.70241614189027	0.00774112201695212	0.0656129928804598
Merged-chr6-87842885-4	chr6	87842793	87842993	+	861.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013493, exon 5 of 5)	3' UTR (NM_013493, exon 5 of 5)	-4134.0	NM_133934	57905.0	Mm.241546	NM_133934	ENSMUSG00000030056	Isy1	5830446M03Rik|AI181014|AU020769	ISY1 splicing factor homolog	protein-coding	4.57195742446319	4.50027892093411	3.96934039341148	4.61997487896739	4.4433789005638	4.4104654277025	4.11828205138814	4.49346443417534	-0.171808573414454	0.678167120797282	0.868016354520324
Merged-chr17-28408483-2	chr17	28408383	28408583	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 8 of 10)	intron (NM_010220, intron 8 of 10)	-43267.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	3.79239204713892	3.64006491064396	3.37165703392289	3.68373077241813	3.5556705221818	3.48355100742844	3.5855285420679	3.54433331347192	-0.292909707261318	0.551279973648411	0.798837168776829
Merged-chr18-84685680-4	chr18	84685594	84685794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023149)	promoter-TSS (NM_023149)	8.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	8.84538395739954	8.99573626078397	8.8624542283769	8.91025330835918	8.98970161419374	8.84188263210298	9.13743222265122	8.7638370178067	0.0462856300973836	0.762634857698142	0.907011913026374
Merged-chr5-138231669-3	chr5	138231569	138231769	+	964.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013773, intron 2 of 5)	intron (NM_001013773, intron 2 of 5)	5765.0	NM_001013773	381680.0	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	4.60361658079922	4.3651140773656	4.12477578402723	4.49974841104755	4.14721639790131	4.09402013509571	3.84213206866518	4.02154001106975	-0.955852094572599	0.0234083190182207	0.141983872125942
Merged-chr5-52383899-4	chr5	52383791	52383991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256059, intron 11 of 11)	intron (NM_001256059, intron 11 of 11)	20087.0	NM_011435	20657.0	Mm.2407	NM_011435	ENSMUSG00000072941	Sod3	AI314465|EC-SOD	superoxide dismutase 3, extracellular	protein-coding	6.94100322741209	6.91296285826619	7.04898083937317	7.34599783360237	7.67852782567592	7.50084360755214	7.55377649956303	7.46401681749125	0.623816919201177	0.00166922541682252	0.0203031093547522
Merged-chr16-49049442-4	chr16	49049324	49049524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8062.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	5.90565638918939	5.40186517292772	6.35198628742382	6.81307557332085	6.03866023414639	5.72898350701748	6.50774792508295	6.18384212609257	-0.137251315826587	0.702044765967957	0.880000781840859
Merged-chr19-37157159-4	chr19	37157060	37157260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 2 of 10)	intron (NM_198300, intron 2 of 10)	-16683.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	7.06098670613716	6.95617856677555	6.84792832641398	7.00071070300877	6.97997939771303	6.76716763735296	6.86678725248701	6.56779897252335	-0.221092583475746	0.276255434868325	0.588302970120437
Merged-chr10-77626909-4	chr10	77626792	77626992	+	774.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019803, intron 1 of 5)	intron (NM_019803, intron 1 of 5)	4571.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	3.99329671320813	3.70818634154632	3.59001509035888	3.90690654917377	3.8562197622026	3.70528085601439	3.68888605252529	3.99143458496983	0.0114629611386438	0.980347388407335	0.99281244474172
Merged-chr8-128552286-3	chr8	128552171	128552371	+	766.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133383.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	2.61426617847421	2.51294471108375	2.49754304936033	2.5520230666178	2.20035290242982	2.24692234921846	2.2204123615703	2.29803524966616	-2.02751806863089	0.0117405906557603	0.0885008261145713
Merged-chr12-100728805-3	chr12	100728705	100728905	+	920.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-3685.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	4.20859113328551	3.95220705360517	3.36346338194941	3.79494721111671	3.80699666995345	3.61315915380451	3.60374142071331	3.77829263906744	-0.454585054472123	0.378520237808509	0.681127818964806
Merged-chr15-59951091-4	chr15	59950994	59951194	+	924.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	65524.0	NM_027668	71088.0	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	4.63597687045805	4.01424876229374	4.48788366387826	4.39265312641955	4.2367858379634	4.25147101072381	4.42718625322244	4.56149033940125	-0.0576664070470989	0.886413997314896	0.957392217457391
Merged-chr14-73388717-4	chr14	73388589	73388789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3400.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	6.6880154533816	6.25048663067941	6.91089531795663	7.26564966452346	6.59271495961402	6.95340193236215	6.44183867956721	6.81383459856574	-0.186378404251302	0.49622242024858	0.766190495474386
Merged-chr5-24034282-4	chr5	24034187	24034387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3597.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	5.88435025449016	5.90021074571093	6.53718751552239	6.75212093711528	5.89043180337709	6.46538937694859	5.80461817649932	6.28542739177862	-0.307249774045089	0.328221183042061	0.639646686774472
Merged-chr11-114723341-4	chr11	114723242	114723442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4070.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	6.28385693058316	6.70573861833982	6.09627301080648	5.78256611403637	5.74217625643113	6.12189303997447	5.84424649993169	5.65991096872658	-0.634091912059797	0.0342092025285696	0.182682633864585
Merged-chr6-83433812-2	chr6	83433712	83433912	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 3 of 11)	intron (NM_001347313, intron 3 of 11)	7866.0	NM_183138	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	3.08700490029129	3.08854670454256	3.25651987522017	3.07980666798718	3.17990374213209	2.99911365978044	3.13473007975799	3.14476047577161	-0.0251321354665191	0.963976847796482	0.987219571066085
Merged-chr1-86389435-4	chr1	86389329	86389529	+	809.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001319227)	promoter-TSS (NM_001319227)	-68.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	3.45508352107114	3.54230063713647	3.01015006669811	3.06193556177827	3.55670891060636	3.45798181384786	3.27055600325208	3.69831045092602	0.763180504883822	0.178057656014901	0.473836973534737
Merged-chr7-15949421-2	chr7	15949321	15949521	+	703.375	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153068, exon 6 of 6)	3' UTR (NM_153068, exon 6 of 6)	-3313.0	NM_133831	68077.0	Mm.277634	NM_133831	ENSMUSG00000041560	Nop53	5330430H08Rik|9430097C02Rik|AU041936|AW536441|Gltscr2|PICT-1|R74911	NOP53 ribosome biogenesis factor	protein-coding	2.77335354111717	2.80699211930572	2.77364381416139	3.04727757667798	2.70364118829831	3.00958772567829	3.00630354903491	2.95981673991862	0.241091375372245	0.703236202517707	0.880656761361176
Merged-chr11-80382726-1	chr11	80382626	80382826	+	645.0	f0_c57.idr	promoter-TSS (NM_011751)	promoter-TSS (NM_011751)	-553.0	NM_001130169	22680.0	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	3.56439394631697	3.80978052124801	3.62373505381716	3.83668565721049	3.83694415196557	4.05213892384127	3.49128288586839	3.97233763748708	0.378360949547543	0.43295216292387	0.722744482862125
Merged-chr11-114915226-4	chr11	114915120	114915320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19166.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	7.02359619122387	6.43747316986336	6.89882812546661	6.92724679791543	5.94792131373166	5.69608536231097	6.31449005552507	6.45011098226602	-1.03954042071252	0.000102471869885845	0.00207093845161969
Merged-chr7-81850400-3	chr7	81850292	81850492	+	875.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8609.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	3.53603445241263	3.14815598334009	3.4825267743044	3.84558957878733	3.468625353047	3.41812134161946	3.5734814335427	3.4806471550441	-0.180380744359009	0.74192661110655	0.898417179766546
Merged-chr7-6155186-2	chr7	6155092	6155292	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001013012, intron 1 of 2)	CpG	779.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	6.05840808242413	6.12976842140541	7.06830166174301	6.44110223920695	6.31429050615138	6.28356458953253	6.27760234185511	6.67945824889499	-0.129864036409099	0.656076014379026	0.856430271691361
Merged-chr10-83344003-4	chr10	83343914	83344114	+	816.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6197.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	3.68073579355755	3.67792318085027	3.68124407681972	3.68159612305979	3.78763234379804	3.43293904176661	3.90293063067929	3.73072896763262	0.148978549724977	0.751994426899952	0.902329068825205
Merged-chr8-74999671-1	chr8	74999571	74999771	+	674.0	f0_balb.idr	exon (NM_178017, exon 3 of 11)	exon (NM_178017, exon 3 of 11)	6021.0	NM_178017	70823.0	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	2.58602156886324	2.49756517502787	2.81384614936717	2.86792256456387	2.18522744573622	2.48834130911053	2.22732461465486	2.30948630560394	-2.66027316522221	0.0025680896246118	0.0283050559600872
Merged-chr15-76818196-4	chr15	76818107	76818307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168288)	promoter-TSS (NM_001168288)	-37.0	NM_198420	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	7.17072002763942	7.13314515047984	6.63878537961238	6.83076239356077	7.30844587280071	7.37062513452787	7.25244930798401	7.12157637422553	0.424121499206857	0.0402604544671285	0.202666116585272
Merged-chr9-51028856-4	chr9	51028751	51028951	+	875.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19778.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	4.26886888066977	4.28257804353165	4.3559533715234	4.48357192665724	4.369497708183	4.03378880898602	4.20578761206332	4.35320037480378	-0.254675098015224	0.518046583522304	0.779264941535832
Merged-chr6-11925866-4	chr6	11925764	11925964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029404)	promoter-TSS (NM_029404)	-17.0	NM_001362122	75725.0	Mm.212411	NM_029404	ENSMUSG00000029629	Phf14	1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|mKIAA0783	PHD finger protein 14	protein-coding	6.50858502176417	6.30898099906051	6.52640954740105	6.82040463261436	6.55415553621884	6.52614976483313	6.71874040301469	6.64765590754399	0.060261676746475	0.78943255050158	0.918484087615678
Merged-chr16-33747665-4	chr16	33747540	33747740	+	919.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 10 of 14)	L1MA6|LINE|L1	-46397.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	3.78974032522733	3.34071280770855	4.02201108806515	4.08419067050979	3.81577832600987	3.68627751671142	3.87124146499028	3.62610192952497	-0.269162804656729	0.601058131948953	0.827071740947179
Merged-chr14-21822945-4	chr14	21822855	21823055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8606.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	6.72821943002855	6.6715874520478	6.95015518200167	7.15857048783128	6.76070811230717	6.6028362680634	6.90230629573831	7.18594797596132	-0.0331075163950086	0.886596619095114	0.957444179369024
Merged-chr11-79530531-4	chr11	79530437	79530637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033711)	promoter-TSS (NM_001033711)	72.0	NM_146023	101488212.0	Mm.439665	NM_146023	ENSMUSG00000070354	Evi2	Evi2a-evi2b|Gm21975	ecotropic viral integration site 2	protein-coding	6.66303823635166	6.69676000089366	6.4876126831616	6.38528559840884	6.72806558469374	6.80979390708363	6.4883131789194	6.64440629325244	0.172474996430307	0.422451745143185	0.714736820316769
Merged-chr15-50402768-3	chr15	50402680	50402880	+	758.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	486269.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	3.27095241254416	3.72886469956841	3.76840994439262	3.34054467876467	3.43836004167424	3.4513170698966	3.70536378859701	3.62081318987653	0.0559785348943715	0.91482577730803	0.968287766405571
Merged-chr6-31525739-2	chr6	31525639	31525839	+	993.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013723, intron 4 of 7)	intron (NM_013723, intron 4 of 7)	38198.0	NM_013723	27205.0	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1|Podxl1	podocalyxin-like	protein-coding	3.16758109393223	3.44205825239132	3.22495285026064	2.9642897902514	2.97143277376166	3.21888567197808	3.03614437034472	3.16633395947715	-0.430564052461993	0.463080463451303	0.744554450168099
Merged-chr19-41339393-4	chr19	41339310	41339510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	45660.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	7.60255746081265	7.55476585258636	7.89595161692736	8.03352326324024	7.3985335408188	7.14140537129122	7.46770095616819	7.59862815326718	-0.5037946623333	0.0128761603627106	0.0944663181258896
Merged-chr6-72899969-4	chr6	72899902	72900102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347231)	promoter-TSS (NM_001347231)	-23.0	NM_019715	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	6.29987583561463	6.23374825530427	6.37054549731698	6.38581465473605	5.96425056316059	5.90112383851038	6.07685120772083	6.14469241627222	-0.467197268763927	0.0403070448494316	0.202814586832864
Merged-chr4-134005774-4	chr4	134005687	134005887	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145833, exon 4 of 4)	3' UTR (NM_145833, exon 4 of 4)	-4923.0	NM_026144	67422.0	Mm.100290	NM_026144	ENSMUSG00000012117	Dhdds	3222401G21Rik|CIT|DS|HDS|W91638	dehydrodolichyl diphosphate synthase	protein-coding	5.12973469262841	4.90072410876305	5.29211232543901	5.38559178477923	5.4322040964096	5.37276311584567	5.35310472847245	5.5101709099467	0.386202805914017	0.197678805441644	0.499044730396766
Merged-chr3-126663589-4	chr3	126663461	126663661	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	66610.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	5.35537869256524	4.71877049910102	5.5347853910223	5.7865878405865	4.79613525008023	4.9580810786237	4.79612277473452	5.07837850469608	-0.954493498524907	0.00985341743098068	0.0780609879217399
Merged-chr15-80564366-4	chr15	80564261	80564461	+	918.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3891.0	NM_001163189	383075.0	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding	4.54253306487479	4.38960646090387	4.87215190416281	4.67596862175948	4.65479297492984	4.67493373083048	4.52256322618154	4.54035621287874	-0.0672835290956678	0.851461810039877	0.944001480340706
Merged-chr2-6405423-4	chr2	6405324	6405524	+	761.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181399, intron 4 of 13)	intron (NM_181399, intron 4 of 13)	52688.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	3.90235332365889	3.92192400092852	4.00051364476797	3.87725901523741	3.75384646789743	3.9177918470477	4.19614337829416	3.9980883093396	0.13195005932927	0.761866061956768	0.90672517808069
Merged-chr7-25133250-4	chr7	25133161	25133361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163555)	promoter-TSS (NM_001163555)	-801.0	NM_001163554	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	5.54628147053263	5.77073283606806	5.48872526123096	5.86351350271119	5.90669419192357	5.88294102094697	5.62834978254416	5.80120694384793	0.193066868997768	0.468663290418576	0.747825151289092
Merged-chr4-84884927-4	chr4	84884798	84884998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175275, intron 1 of 25)	CpG	589.0	NM_177385	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	5.77021378436014	5.13556526100988	5.81494448653291	5.61435452082791	5.30339732520803	5.55912838421872	5.32604457993537	5.43856169238079	-0.34672244620089	0.249099526076583	0.560263379359975
Merged-chr13-90050017-4	chr13	90049920	90050120	+	962.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028012, intron 3 of 7)	RLTR18-int|LTR|ERVK	39588.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	5.46594225832353	5.93690809971746	4.70037861140586	4.44620107880438	5.36883557153069	5.39383082890235	4.84660518201632	4.45065999572975	-0.400767837666604	0.581552554114047	0.816375687787867
Merged-chr12-73780091-4	chr12	73779908	73780108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121316.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	5.20969147174761	5.305767072697	4.75020975604048	5.30965481486379	5.07937213610163	4.92902800619959	4.84913339827727	5.11463772237652	-0.331900759887916	0.312276453828737	0.624210893512193
Merged-chr5-139791930-3	chr5	139791821	139792021	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010757, intron 1 of 2)	CpG	385.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	6.21237549048279	6.28432556943775	6.26837951521767	6.13626093237087	6.01853028420039	5.92135462239922	5.93580319532945	5.89180247717977	-0.425335858578077	0.0660524521913252	0.273695860666337
Merged-chr17-71165181-4	chr17	71165073	71165273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18359.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	8.59747688991813	8.83305085729622	8.71021826745128	8.54579481096107	8.77313305141093	8.84897520098245	8.61406561577328	8.60261625410658	0.0509931554869062	0.744591378121023	0.899296643574982
Merged-chr11-70648797-2	chr11	70648697	70648897	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316728, intron 3 of 9)	intron (NM_001316728, intron 3 of 9)	1510.0	NM_027445	70510.0	Mm.261818	NM_027445	ENSMUSG00000040746	Rnf167	0610010G05Rik|5730408C10Rik|AU019305|AV328608	ring finger protein 167	protein-coding	3.4672472972875	2.99327937496921	3.04221025913744	2.63439263340937	3.23023488229944	3.21748133854518	3.09173384003659	2.83766253235441	0.14135242671749	0.831303012086696	0.935322338382222
Merged-chr19-12439753-4	chr19	12439642	12439842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	11837.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	6.12032170370581	6.02006937307767	5.83583221172996	5.75156865800548	5.8380888071151	6.40756595996988	6.00929154911481	5.94917947963005	0.205125173582116	0.436772727161389	0.725278104435332
Merged-chr17-23740411-4	chr17	23740295	23740495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023824)	promoter-TSS (NM_023824)	-65.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	6.71710108674072	6.61875254374264	6.57945218291259	6.94420303090466	6.48771528493125	6.77221122578611	6.8085158695449	6.59095481507701	-0.10365391585692	0.635167227871058	0.845633612363053
Merged-chr4-130917805-4	chr4	130917716	130917916	+	975.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	4482.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	4.92849322280783	4.96717407333248	4.92931218629069	4.86416046913954	5.04589561760044	4.79469289582934	4.68096812727346	4.96013149243974	-0.0616209529953417	0.849582893081114	0.943172698649645
Merged-chr7-34958001-4	chr7	34957893	34958093	+	911.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 7 of 14)	intron (NM_008820, intron 7 of 14)	45586.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	4.35377715468265	4.71468038731626	4.75446751893702	5.22429531187151	4.20493491083804	4.04164579910003	4.33520765327726	4.48515970652301	-1.223475013698	0.00391982355282677	0.0394359181154285
Merged-chr10-77033895-4	chr10	77033792	77033992	+	866.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031196, intron 1 of 5)	intron (NM_031196, intron 1 of 5)	680.0	NM_031196	20509.0	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	3.93019662910489	4.23864964405237	3.7193985091554	3.93905048473295	3.89840771882212	4.10119556390865	3.70540432558552	3.77347055966725	-0.263470037801254	0.56657163520341	0.80794972196465
Merged-chr6-3397407-2	chr6	3397293	3397493	+	798.75	f0_c57.idr|f1_c57bl6.idr	intron (NM_010156, intron 1 of 1)	intron (NM_010156, intron 1 of 1)	2178.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	2.50182637818596	2.44423310780775	2.50203837643221	2.1292400271615	3.46652208659008	3.5204398392492	3.12344554438593	3.2450246591769	7.27335648381954	6.45709268844818e-13	7.11469660171909e-11
Merged-chr2-35329131-2	chr2	35329031	35329231	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	7878.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	3.04504216705533	2.9979797912044	3.04541625200276	2.89388629725263	3.28035789429116	2.88145288698109	3.35293139514591	3.04390331197586	0.672068779414752	0.249525500456399	0.56056607742034
Merged-chr12-32642676-4	chr12	32642560	32642760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177675.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	6.38354747569193	6.57201349257682	6.06666457138741	6.42860768814641	6.51751048232762	6.24454329626638	6.42004153637629	6.23118654024019	-0.023400157955245	0.920341879309438	0.97043423951189
Merged-chr10-60280052-4	chr10	60279968	60280168	+	952.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 1 of 14)	B4A|SINE|B4	2440.0	NM_001146121	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	4.67304448825983	4.06395469088424	5.16357483703372	5.12807151710685	4.91636385327092	4.62810189848917	4.56484839497309	5.67456270569944	0.399003110557185	0.585188438365649	0.818019059737303
Merged-chr4-154159180-4	chr4	154159036	154159236	+	958.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151647, intron 3 of 3)	intron (NR_151647, intron 3 of 3)	1548.0	NR_151647	67808.0	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	4.65670313647622	4.86351803712591	4.50436524738408	4.42704513762564	4.23764705020119	4.31018130877945	4.44264306849859	4.32768396422594	-0.667919520069449	0.0809730555199729	0.308744435912798
Merged-chr1-170901745-4	chr1	170901648	170901848	+	936.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	11193.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	4.74884598178216	4.36747621082208	4.0345568724701	4.18500572973822	4.83817955072309	4.69825766262301	4.65656165327542	4.52215153118499	0.751938862566225	0.0554406440210842	0.246284066702662
Merged-chr8-90908305-4	chr8	90908211	90908411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	CpG	-23938.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	8.61750693290878	8.74825799371299	8.97400256417364	8.60772425633737	8.81194748855685	8.91262833517405	8.99885593106834	8.81147864737913	0.178676055295473	0.258925989422525	0.570714798907067
Merged-chr2-93849913-4	chr2	93849823	93850023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290782)	promoter-TSS (NM_001290782)	20.0	NM_001290782	329470.0	Mm.486910	NM_183220	ENSMUSG00000040272	Accs	2610203E10Rik|Phacs	1-aminocyclopropane-1-carboxylate synthase (non-functional)	protein-coding	7.57576048119975	7.55239024482613	7.75669333740445	7.78509079070376	7.35359053642071	7.33065636797731	7.68040266645048	7.36208087185296	-0.314507979029793	0.0871646629162643	0.321966452605956
Merged-chr3-79842319-4	chr3	79842235	79842435	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027495, intron 1 of 11)	intron (NM_027495, intron 1 of 11)	327.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	5.13836410039636	5.24762871480485	5.0010454946462	5.01615936738636	5.55517295403407	5.10343769864378	5.17745828628044	5.16801540694761	0.3322271735893	0.283098911056369	0.595263611222688
Merged-chr5-65956061-4	chr5	65956060	65956260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10964.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	5.74682207310545	6.26798009409533	5.79822068477261	5.55182552938695	6.06901203395963	5.97431731872432	5.71871069923123	6.04002355434376	0.159194019746392	0.573164860916813	0.811692154196247
Merged-chr14-20661168-4	chr14	20661064	20661264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001310431, exon 4 of 4)	exon (NM_001310431, exon 4 of 4)	3410.0	NM_001310432	68760.0	Mm.35789	NM_175132	ENSMUSG00000039376	Synpo2l	1110054M18Rik|Chap	synaptopodin 2-like	protein-coding	7.10640674773669	7.12025859618397	6.51847642711289	7.20937784234415	7.10645478576803	7.46964840962313	7.18392228385574	7.23637135378259	0.307261869181337	0.169346259354538	0.461852844729555
Merged-chr19-25052471-4	chr19	25052355	25052555	+	965.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 2 of 47)	intron (NM_028785, intron 2 of 47)	52926.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	5.06099866194678	5.21881999503294	4.95939528883867	5.14478738509689	5.23222867547849	4.67797154556706	4.78630285178077	5.09075364480996	-0.237399600685806	0.476308908351637	0.752852170354211
Merged-chr7-118283383-3	chr7	118283284	118283484	+	825.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	39477.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	3.16003184355048	2.89276252126494	3.10821517029301	3.01325221567315	2.81142754213459	2.84518357748452	2.86481692677623	2.73845459416504	-1.03815795377774	0.094346285295191	0.336071650883514
Merged-chr11-69671391-4	chr11	69671283	69671483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159375, intron 1 of 10)	CpG	1040.0	NM_144958	13681.0	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	7.68630994133593	8.04495130028335	7.63594534397213	7.79441060079432	8.0111512595606	7.83954977761441	7.77029024005061	7.7951674755517	0.0760382174740861	0.670897600020496	0.864385118775275
Merged-chr2-153784199-4	chr2	153784102	153784302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036629, intron 3 of 7)	MLT1E1A|LTR|ERVL-MaLR	3323.0	NR_036629	100504221.0	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	5.78013944557752	5.9611004017381	5.75668603199476	5.99306417170231	5.95684745408267	5.31769335381254	5.79906625200303	5.77705352176733	-0.226191800814066	0.409124578129974	0.704822890162842
Merged-chr11-86484488-4	chr11	86484355	86484555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029788)	promoter-TSS (NM_029788)	-202.0	NM_029788	76892.0	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	8.48506281795395	8.47593476299773	8.41028407479563	8.25793839585041	8.47380457781292	8.66385290213494	8.48587121949248	8.36767829889795	0.120802446954062	0.44250408211692	0.729181573353402
Merged-chr15-35326691-4	chr15	35326544	35326744	+	829.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045280, intron 1 of 2)	CpG	1891.0	NR_045280	100126269.0	Mm.247402	NR_045280	ENSMUSG00000115453	BC048602	-	cDNA sequence BC048602	ncRNA	4.10020644730356	3.93489958773667	4.10083012246905	4.13756293247268	4.08781877345944	3.91746957795397	3.72556044925628	4.22650848734164	-0.177192880801559	0.683654446837272	0.870394242877558
Merged-chr9-119417368-1	chr9	119417268	119417468	+	580.0	f1_balb.idr	intron (NM_007397, intron 1 of 9)	intron (NM_007397, intron 1 of 9)	15190.0	NM_001313757	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	2.2198597981489	2.24940840989489	2.51369250746269	2.35893692561226	2.5430194698314	2.68521669416655	2.74163525953292	2.5767234012785	1.61097249204432	0.0256963190639538	0.15118517892653
Merged-chr6-119449153-4	chr6	119449043	119449243	+	653.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	(CA)n|Simple_repeat|Simple_repeat	243.0	NM_001271757	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	3.44124505896025	3.6268823687456	3.77404245055959	3.61682457232462	3.70368991830991	3.73563776324865	3.80535568689145	3.771802754467	0.407172775982303	0.379046286073781	0.681591946151114
Merged-chr19-37443028-4	chr19	37442862	37443062	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8121.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	4.30608819168439	3.97098253354424	3.89094591681806	4.32279721423706	4.38369747856765	3.9561566544405	3.82078275231156	4.04267037969995	-0.166097285615544	0.716412876246222	0.8866074790069
Merged-chr11-4336041-1	chr11	4335941	4336141	+	647.0	f0_balb.idr	Intergenic	Intergenic	69245.0	NM_001039537	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	2.68305338337797	2.5735339864745	2.51036129736187	2.76117333952205	2.1647424070543	2.17420755223955	2.15400333369028	2.23541846748075	-3.60568962828558	0.000524321818709531	0.00802250703652746
Merged-chr6-83634810-3	chr6	83634712	83634912	+	885.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21304.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	4.03661399894168	3.58604638353378	3.57591693869566	3.68819395280037	3.39565733605914	3.63579495194125	3.50589931445656	3.57396641541842	-0.657457517266299	0.188276531661631	0.486850123144918
Merged-chr2-131430259-3	chr2	131430161	131430361	+	581.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61601.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	3.34603921360144	3.01390729304651	3.04416492532754	3.33830024898472	2.94986035259501	3.51517067887296	3.27836615638736	3.39735775467027	0.355320402013694	0.547624210538225	0.796931843492395
Merged-chr11-88197412-3	chr11	88197313	88197513	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291270, intron 1 of 4)	intron (NM_001291270, intron 1 of 4)	3307.0	NM_001291270	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	5.43794540165765	4.99922863439348	4.97227549066961	5.09907217786798	4.05508368909067	4.30412371854136	3.97197617676905	4.42999799955595	-2.12501711187679	1.01472041485165e-07	4.34316202096967e-06
Merged-chr17-33566405-4	chr17	33566310	33566510	+	925.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053214, intron 1 of 27)	intron (NM_053214, intron 1 of 27)	10703.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	4.7351081160386	5.23572251711676	4.99040628929355	4.86495178992551	4.7312233147154	4.95023657972269	4.71390653417969	4.847998203627	-0.320088146640171	0.342798271844118	0.6516462545027
Merged-chr3-95457907-4	chr3	95457734	95457934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037737, intron 3 of 21)	intron (NM_001037737, intron 3 of 21)	23444.0	NM_001037737	11863.0	Mm.250265	NM_009709	ENSMUSG00000015522	Arnt	D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051	aryl hydrocarbon receptor nuclear translocator	protein-coding	4.54787976119272	4.53306652226925	4.87725684815878	4.64044940876327	4.64073702397328	4.59309561094775	4.56849167788645	4.54570260150318	-0.138986286315433	0.692184197082823	0.874789880500739
Merged-chr1-131138900-4	chr1	131138806	131139006	+	823.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145508)	promoter-TSS (NM_145508)	-672.0	NM_145508	226419.0	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	3.72608049952782	3.90784039492001	3.83652754696943	3.82526380897576	3.90490447603745	4.06001469164131	4.01409799852364	4.1167524853037	0.539097327770585	0.20602120624148	0.509905888211074
Merged-chr11-82007930-4	chr11	82007797	82007997	+	763.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D|LTR|ERVK	-27680.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	3.71690410036042	3.53031690402263	3.90598996215986	3.68838521419117	3.6707602722922	3.48426307786642	3.54188563330172	3.85904161133655	-0.197619514627831	0.683303465569938	0.870307072406269
Merged-chr7-143056122-4	chr7	143056029	143056229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-2443.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	5.97404130407634	5.46675618257708	5.46615076410453	5.57672643200983	5.68198405447304	5.75533679642845	5.68128104376856	5.84613076524842	0.182025680806083	0.503887835883833	0.770592637321386
Merged-chr1-100180244-2	chr1	100180147	100180347	+	956.833374	f0_balb.idr|f0_c57.idr	intron (NM_172851, intron 10 of 23)	L1Md_F2|LINE|L1	407482.0	NM_172851	241175.0	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding	5.77740977534775	5.8697205734473	6.2438958824993	3.5089574534791	5.44464154543561	6.0292364949452	5.59347396189607	6.81278597244673	0.576976050930339	0.530460962862922	0.786540312295789
Merged-chr17-31856027-4	chr17	31855972	31856172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010831)	promoter-TSS (NM_010831)	-268.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	7.40737249504166	7.60432335890053	7.00905733453247	7.12087990567619	7.56872489524937	7.64299524797007	7.20532734482577	7.63478663791979	0.295616482564578	0.16839974717067	0.460469608122923
Merged-chr11-3176659-2	chr11	3176517	3176717	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 6 of 32)	B3|SINE|B2	16846.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.7628190465612	5.41365867569841	5.98989877414635	5.9485486599166	3.45067206910947	3.8310682434421	3.75366152056014	3.84359480181398	-7.10763596350143	2.06925035969476e-13	2.53070741155865e-11
Merged-chr6-51510276-4	chr6	51510135	51510335	+	839.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13668.0	NM_001361582	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	4.22294040942097	3.92740578153396	3.78849323744908	4.13262850322348	3.70266457786085	4.07322965795102	4.07616799162244	4.22087812873608	-0.0242889441237924	0.957125341310793	0.984757116793997
Merged-chr4-66843468-4	chr4	66843382	66843582	+	964.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021297, exon 3 of 3)	3' UTR (NM_021297, exon 3 of 3)	15931.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	6.34602982201306	6.19646400961402	5.9447547378734	6.37202953858269	5.55823211446137	5.35431017676633	5.54294507580415	5.08403083888673	-1.34972722660713	1.39710844085876e-06	4.73752508261666e-05
Merged-chr12-85974221-4	chr12	85974106	85974306	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	MLT1F|LTR|ERVL-MaLR	104835.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	4.09305788259947	3.84258416499733	4.22747347794302	3.98193064785934	4.1000580063789	3.83534361655282	4.40157424545205	4.22477152453591	0.310200439468055	0.472641677066212	0.750756776949764
Merged-chr18-80714998-4	chr18	80714915	80715115	+	896.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1944.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	4.49279893072311	4.06319512366777	4.6069528374962	4.59383883867793	4.05739134690323	4.45350992679999	4.58478571374146	4.22841367228624	-0.283541138670074	0.495887466989344	0.766025331518119
Merged-chr17-36967021-4	chr17	36966900	36967100	+	921.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8408.0	NM_029602	76416.0	Mm.26684	NM_029602	ENSMUSG00000036214	Znrd1as	1700022C21Rik|AI746295|Znrd1-as	zinc ribbon domain containing 1, antisense	protein-coding	3.82187704862225	4.16297873734756	4.16169927957361	3.93203032745982	3.74496234151311	3.56011245972596	4.30049820008236	4.20083218072872	-0.105158689292742	0.82874325193873	0.9342442458901
Merged-chr17-34157108-4	chr17	34157006	34157206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010387, intron 2 of 5)	intron (NM_010387, intron 2 of 5)	3915.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	5.10666393639761	5.57877701382023	5.30360636807857	5.28093357505555	5.56247805925696	5.35192175026806	5.11744773708252	5.26931075566685	0.0286330716926259	0.92486601937855	0.972242873959408
Merged-chr3-144039649-4	chr3	144039498	144039698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	162734.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	5.5624177928415	5.56406224701175	6.06572145347251	5.63982947965665	5.70359028818124	5.65366810240507	5.8319873801104	5.64089813728102	-0.0116709477813954	0.965762216321349	0.987949946498776
Merged-chr16-16983902-4	chr16	16983801	16984001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038663, intron 1 of 7)	CpG	519.0	NM_001038663	26413.0	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	5.11675727787183	5.220823486326	5.79881799894702	4.87245365192529	5.11763627593299	5.18823290985712	5.31333814189568	5.55024974802387	0.0257070478565196	0.941539836702979	0.978934619291285
Merged-chr2-133550642-4	chr2	133550531	133550731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1528.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	6.58491322649104	6.58698169196853	7.15959543324381	6.95497548277523	7.09268279854809	6.72994718485124	6.86381231387414	6.99510091674331	0.118685857951897	0.601824843796123	0.827278162966421
Merged-chr17-26242216-4	chr17	26242120	26242320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	2022.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	5.67465408321109	6.20012451196768	5.51042715054236	5.487472913333	5.97765024144299	5.77200300589848	5.53992900175037	5.59176840668053	-0.0148390294225841	0.961191443679596	0.986114717027689
Merged-chr9-48580988-3	chr9	48580846	48581046	+	646.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	24177.0	NM_010924	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	2.68413046327913	3.23537280314197	2.83039026708027	2.75431919859379	2.71016376652112	3.00885767063196	3.27805111213199	3.1903644552805	0.695546605837712	0.296361120918109	0.608442117849152
Merged-chr17-5765949-4	chr17	5765857	5766057	+	933.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32700.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	5.23100546063547	5.11169769672946	5.58388621827668	6.02766904663428	4.9450009689572	5.02916734647697	5.86875158624531	5.7696119124677	-0.140720816442706	0.720484972304966	0.888297446229953
Merged-chr3-27291155-4	chr3	27291058	27291258	+	973.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-25919.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	5.09422030861236	5.49784189108917	4.94299452588915	4.53379869373183	5.93171418752901	5.64101114725382	5.51666424976706	5.25959716091601	1.00111031555232	0.00522858034328848	0.0491047790282268
Merged-chr10-7142472-4	chr10	7142371	7142571	+	982.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172546, intron 5 of 12)	intron (NM_172546, intron 5 of 12)	69766.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	5.43588066962679	5.37499461129046	5.77425675240451	5.52269515060293	5.27948510906864	5.23077059308284	5.0278575675301	5.2229655155662	-0.600787042857419	0.0400327090896603	0.201897421392383
Merged-chr14-103011946-4	chr14	103011727	103011927	+	906.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	L1MA6|LINE|L1	21976.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	3.30057385792017	2.91078176535271	2.93837619393834	2.61369229472549	3.43803651851088	3.30585441706104	3.23349627271002	3.06900896791743	1.24663785929905	0.0485248335421141	0.227338190396507
Merged-chr16-91885213-2	chr16	91885124	91885324	+	881.349976	f0_balb.idr|f1_balb.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	46406.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	4.15237366037584	3.75588978968905	3.36223732452429	3.85964748203094	2.91771588220706	3.05594645761945	3.01163399796169	3.16555979437244	-3.18533591821526	3.66093744510978e-06	0.000112457244071017
Merged-chr9-89974785-3	chr9	89974688	89974888	+	877.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011245, exon 9 of 27)	exon (NM_011245, exon 9 of 27)	65013.0	NM_001357743	19417.0	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	3.82962160205605	3.3834896358008	4.01350817413198	3.54431734132756	3.90403606698098	3.84762400375294	3.81379668025285	3.77770787735975	0.395926746727361	0.414713128938241	0.709144904739707
Merged-chr11-82022845-4	chr11	82022722	82022922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12755.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	6.75003681195044	7.28017708650541	6.70801070304424	6.26215154013286	6.46179703499831	6.69588153784817	6.48515904569224	6.61210867128416	-0.33111267478731	0.21782000859798	0.524748202531498
Merged-chr4-32983475-4	chr4	32983416	32983616	+	957.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027491, exon 1 of 7)	exon (NM_027491, exon 1 of 7)	518.0	NM_027491	52187.0	Mm.300814	NM_027491	ENSMUSG00000028278	Rragd	5730543C08Rik|AI467523|C030003H22Rik|D4Ertd174e	Ras-related GTP binding D	protein-coding	4.6051529374444	4.73082541502628	4.82884178599227	5.17609581077745	4.32611479788652	4.56375368758356	4.2673902320528	4.68154340921541	-0.883499478609829	0.0211974474578776	0.133040570726062
Merged-chr9-35199953-4	chr9	35199860	35200060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177847)	promoter-TSS (NM_001177847)	5.0	NM_001177846	117149.0	Mm.23987	NM_054096	ENSMUSG00000032041	Tirap	AA407980|C130027E04Rik|Mal|Tlr4ap|Wyatt	toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	protein-coding	6.74578646331442	6.49500680025722	6.58126934049135	6.64732623595186	6.7048917757853	6.65752759572337	6.97567090532629	6.34968342306845	0.104069341536517	0.642833641062331	0.84935134647267
Merged-chr9-118703420-3	chr9	118703316	118703516	+	797.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-8276.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.79802889812014	2.87182301870922	3.0968121767914	2.8894717245701	3.25591281462014	3.76545600108812	3.66764414842184	3.44836624856454	2.35634630336736	7.43772956055002e-05	0.00157891485950012
Merged-chr18-83853985-4	chr18	83853886	83854086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	232576.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	6.53839158456021	6.63833740187966	6.60329365793643	6.82632257646138	6.4837303000201	6.42442201049805	6.60016204306081	6.41498288799468	-0.269434080191323	0.203622259709584	0.506593108139409
Merged-chr5-145114300-4	chr5	145114196	145114396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023142)	promoter-TSS (NM_023142)	40.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	6.5191498878446	6.89572576614632	6.88105403794885	6.7102096224439	6.5563349734765	6.85999194797481	6.99326685960004	6.73827537420796	0.0425464132310566	0.844671136304713	0.941125889580383
Merged-chr2-38509200-3	chr2	38509104	38509304	+	811.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2493.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	3.05488623999419	2.89574269888824	2.93956000485389	3.05327614758993	2.95033125187514	2.84861468244798	2.66540705698108	3.05361651498993	-0.438153343864223	0.480497287706477	0.755982465057009
Merged-chr6-71272505-2	chr6	71272380	71272580	+	644.0	f0_balb.idr|f0_c57.idr	TTS (NR_106192)	TTS (NR_106192)	461.0	NM_145568	57896.0	Mm.250569	NM_145568	ENSMUSG00000053012	Krcc1	AA792894	lysine-rich coiled-coil 1	protein-coding	3.68692654252443	3.88690961046745	4.18116058073585	3.75511906280955	4.17208696773491	3.86611156475401	4.0780370937642	4.00327541285122	0.43159376742446	0.331841895871078	0.642918269582936
Merged-chr2-93624877-4	chr2	93624769	93624969	+	909.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17565.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	4.17922628086644	4.51108321342878	4.2306161860988	4.81407399041621	4.50235024799459	4.30650052595368	4.62988908163753	4.53668914523946	0.0381099655436112	0.925876583595568	0.972702408158768
Merged-chr10-89741221-4	chr10	89741122	89741322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3769.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	5.61780893761637	5.66623012025806	5.50651572294566	6.11725545615336	5.63192979821859	5.84631840253527	5.44960231771444	5.83588739105148	-0.124976543902196	0.670696441150195	0.864214400064935
Merged-chr17-29513351-4	chr17	29513257	29513457	+	917.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22312.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	4.82429390046949	4.19422599953245	4.16206806527739	4.11010022121774	4.9390340334403	4.89097028280335	5.10456270044179	4.85591436488523	1.31137597815703	0.000629800636515792	0.00927456550170523
Merged-chr9-95512031-4	chr9	95511939	95512139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114977)	promoter-TSS (NM_001114977)	-43.0	NM_001357974	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	8.1513790557104	8.55300470346343	8.45530378499518	7.98094625027245	8.54939351201354	8.69634806619441	8.20559903478679	8.2330597906281	0.174320815510594	0.389413107797868	0.689709256493093
Merged-chr12-57231823-2	chr12	57231723	57231923	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164370, intron 1 of 9)	MTD|LTR|ERVL-MaLR	1398.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	3.13406040585274	3.12371593805198	3.75096383760151	2.6996015778425	3.00359701375692	3.12095974790159	3.06078405708567	2.93696120426293	-0.771333108134881	0.248708505683072	0.559950109948296
Merged-chr12-99902681-4	chr12	99902547	99902747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028354, intron 6 of 15)	intron (NM_028354, intron 6 of 15)	18132.0	NM_028354	104884.0	Mm.312323	NM_028354	ENSMUSG00000021177	Tdp1	2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1	tyrosyl-DNA phosphodiesterase 1	protein-coding	5.23317611682852	5.29048395324653	5.38735178670504	5.77574357457571	5.37163332434862	5.47229534994385	5.10767922437388	5.35441763191208	-0.229874297489166	0.458312647491221	0.741196722451408
Merged-chr3-27692402-4	chr3	27692284	27692484	+	934.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	intron (NM_001356953, intron 1 of 26)	18068.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	4.1297432178817	4.44640390070561	4.31651672773674	4.4900611402568	4.21968384824103	3.97536338112063	4.45790248977344	4.35636029639583	-0.237285451877241	0.558463520831694	0.803177785284069
Merged-chr2-27411868-4	chr2	27411786	27411986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	15722.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	5.84637725800599	5.39795376642345	5.44721870126987	5.63506798110862	5.74134963463797	5.46888741132879	5.68284081620708	5.35204760022655	-0.0244644386342567	0.93137286292683	0.975279137937273
Merged-chr2-167570074-4	chr2	167569978	167570178	+	815.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31883.0	NM_011427	20613.0	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding	4.59242258251709	4.60743380197005	4.62985651468345	4.47878487136608	4.26174447966832	4.60722880043538	3.91185299082807	4.29900189019733	-0.665880836665816	0.0967426473998956	0.340703642776615
Merged-chr8-26693951-4	chr8	26693851	26694051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	130472.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	5.54456718214426	5.92446598691457	5.7961403929043	5.35265562189698	6.44383139879666	6.4661488885111	6.01676074989184	6.10430757135682	0.9756007772096	0.000357912547606637	0.00586190916385017
Merged-chr12-85385045-3	chr12	85384943	85385143	+	826.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10326.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	3.62435249754714	3.48290952941157	3.67284661655497	3.44218550458525	3.48470627757101	3.40421459500915	3.34164416204588	3.35181782532558	-0.512946291167786	0.312139430640339	0.624094734088447
Merged-chr5-101827116-4	chr5	101827004	101827204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61974.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	5.79520112984313	6.97428169912679	6.01056416729536	5.25035336917965	6.19501827755552	6.3121305277378	5.95747651895338	5.71197008650648	-0.176526487055905	0.756944312822382	0.904554066545557
Merged-chr10-13553148-4	chr10	13553051	13553251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347361)	promoter-TSS (NM_001347361)	-9.0	NM_001347361	56535.0	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	6.85754689974742	7.02090256017676	6.65146950126439	6.98031464035044	6.9159421078255	6.87511014551625	7.20792382252131	6.82618109406526	0.0998953611283313	0.631495810620003	0.843434534650137
Merged-chr13-44229542-4	chr13	44229417	44229617	+	973.1875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13030.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	4.00513408787955	4.2271395341589	3.83054740112212	4.11149716988887	3.23244282393331	3.21449146532284	3.16678333445449	3.1745950159916	-3.1888051664744	3.1106827191556e-07	1.20334394166726e-05
Merged-chr17-62576106-4	chr17	62576017	62576217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	305200.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	7.11758342209593	7.02137551861799	7.45775473990099	7.6924875334537	7.24016566901941	7.1142574211285	7.46621948097015	7.55064718624636	-0.0117977213152624	0.95858949322622	0.985248919859626
Merged-chr15-53349112-4	chr15	53349005	53349205	+	865.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA8|LINE|L1	-2922.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	4.40543470858143	3.82660862589556	4.25233790594586	4.12853702376907	3.96103852074046	4.05028725533234	4.05918395861151	3.81553956756406	-0.504078002888237	0.251820116036829	0.563042010833474
Merged-chr5-114315287-3	chr5	114315207	114315407	+	815.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164573, intron 1 of 30)	MLT1K|LTR|ERVL-MaLR	366.0	NM_001164573	231646.0	Mm.238285	NM_146163	ENSMUSG00000066952	Myo1h	4631401O15Rik	myosin 1H	protein-coding	3.78053694591972	3.93790310586062	3.82918058171003	4.01116616248718	3.33391087404319	3.4290404028223	3.66430697510719	3.566525543222	-1.28201627396258	0.00945428159827657	0.075836376640539
Merged-chr11-82570214-4	chr11	82570106	82570306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-63147.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	5.60756112842722	6.04587536137692	5.86102534074412	5.81715071928246	5.8324661891622	5.60833646165411	5.94004602759369	5.81026438822566	-0.0609105554739604	0.813865318196433	0.928109035433692
Merged-chr19-44118028-3	chr19	44117925	44118125	+	818.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081077, intron 10 of 13)	intron (NM_001081077, intron 10 of 13)	-10548.0	NM_001162410	12675.0	Mm.3996	NM_007700	ENSMUSG00000025199	Chuk	AI256658|Chuk1|Fbx24|Fbxo24|IKBKA|IKK alpha|IKK1|Ikka|NFKBIKA	conserved helix-loop-helix ubiquitous kinase	protein-coding	3.64781914463198	3.824264096407	3.70965601201794	4.23899814497713	4.13072937613325	4.15240414214787	3.80966260870377	4.3909363820686	0.629748852811038	0.200914685002988	0.503065263001114
Merged-chr2-75609689-4	chr2	75609609	75609809	+	911.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49550.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	4.02926316699413	4.2350221859436	4.33494532982066	4.07587982165911	4.58513379572555	4.63693785553981	4.82614440826254	4.50200273561809	1.10249294869722	0.00318036995920587	0.0334035049913405
Merged-chr2-103569955-4	chr2	103569876	103570076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	3666.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	5.92486476489067	5.89809831444323	5.5535631054118	5.11891814991296	6.55799976432515	6.51071591815547	6.14457742301117	6.13365529930147	1.11375460386127	0.00017191969357766	0.00320762041131435
Merged-chr14-8985612-4	chr14	8985499	8985699	+	896.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	319209.0	NR_045968	74859.0	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA	5.04696404440165	4.53333767692396	4.73760910684586	5.15490656226333	5.03590380239462	4.74849776070128	4.59390740346428	4.65406090571033	-0.252131548268352	0.498194976295984	0.767539498804104
Merged-chr19-60790103-3	chr19	60790010	60790210	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010123, intron 1 of 21)	CpG	583.0	NM_010123	13669.0	Mm.2238	NM_010123	ENSMUSG00000024991	Eif3a	A830012B05Rik|Csma|Eif3|Eif3s10|mKIAA0139	eukaryotic translation initiation factor 3, subunit A	protein-coding	4.85875616429189	4.64587974575293	5.10133786326505	4.8850518678358	4.84738804006322	5.41962878455357	4.79821831906074	5.21756105535478	0.405655491295457	0.243057188258087	0.554025926378531
Merged-chr19-36083103-4	chr19	36082997	36083197	+	905.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019428)	promoter-TSS (NM_019428)	-619.0	NM_019428	54364.0	Mm.277891	NM_019428	ENSMUSG00000024800	Rpp30	Rnasep2|TSG15	ribonuclease P/MRP 30 subunit	protein-coding	3.71396653169295	4.10865860767886	4.28877659968963	4.21382126625398	4.22391878591797	4.28120585722791	4.49753810040087	4.15280887508393	0.464174400577863	0.277660999987228	0.589700641340894
Merged-chr6-39232871-4	chr6	39232774	39232974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26101.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	5.52495674873036	5.28920094808769	5.19151618976291	5.00626495231082	5.19049882514436	5.0855612147246	5.22779790270359	5.21944346273453	-0.12347892092636	0.688909235738951	0.873037023352908
Merged-chr5-140616368-4	chr5	140616247	140616447	+	948.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008494)	TTS (NM_008494)	9006.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	5.12999824827745	5.31016736281724	4.750947894784	5.04158851084988	5.0540491725998	4.61753008484121	4.72888420346376	4.66494309614223	-0.562550870755737	0.110680902619943	0.367477888583017
Merged-chr13-102700986-4	chr13	102700887	102701087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360519, intron 1 of 2)	intron (NM_001360519, intron 1 of 2)	7429.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	5.62955824535321	6.066749403309	6.11237353999014	5.86439410715343	5.9149714242486	5.75163140924591	5.62969639341407	5.98818991079315	-0.155505103177208	0.554778374288193	0.801044670619386
Merged-chr12-111933491-4	chr12	111933384	111933584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10998.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	6.28558583168609	6.08781612107741	6.11182819389967	6.08699526755297	6.13771181972522	6.46133275473285	6.18017269690254	6.10746444924162	0.127729565807768	0.582178987413681	0.816501953640427
Merged-chr2-158132640-2	chr2	158132540	158132740	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 4 of 12)	intron (NM_009373, intron 4 of 12)	13752.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	2.22837296748317	2.1706460815193	2.22859018262322	2.08503557606406	2.33368324033674	2.53999115852389	2.42408949314303	2.49387600915083	1.70799940735297	0.0192491330961478	0.124693669880843
Merged-chr7-25686935-4	chr7	25686905	25687105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011577)	promoter-TSS (NM_011577)	3.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	7.09036059217734	7.49893354652634	6.77096974477694	6.62975460959567	7.03855134227867	7.43345705471903	7.12440310516122	6.9097017148466	0.138020278348677	0.588018828107173	0.81945712596602
Merged-chr17-7430486-4	chr17	7430383	7430583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45178.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	6.93673698926689	7.22649426219632	6.82440668647879	6.32843197214176	7.37146652197763	7.5848636886098	7.37116655794155	7.51864113495171	0.826623501809301	0.000502464356779593	0.00774635270764883
Merged-chr14-118813213-3	chr14	118813116	118813316	+	643.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160097, intron 1 of 3)	intron (NM_001160097, intron 1 of 3)	25345.0	NM_001160097	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	2.79658211611001	2.89938373064694	2.96881773091021	3.07558111121784	2.43551917119932	2.46784997952701	2.72494176604936	2.66691511577766	-1.96575808685968	0.00737524271466762	0.0632484820707622
Merged-chr15-73644146-4	chr15	73644052	73644252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19408.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	5.20329307451525	5.59228513277249	5.35776833511143	5.14375387629516	5.30348983783032	5.41106873751919	5.17871684991762	5.29487492568881	-0.0524377717680877	0.860345845271727	0.947129574842573
Merged-chr15-31413113-3	chr15	31413023	31413223	+	821.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	40566.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	4.07328451568748	4.18320244348309	3.88551269208346	3.85311000767694	3.70820128239523	3.9546072440976	3.81830207475808	3.88326265958655	-0.456850783889146	0.305580700230433	0.617941664868378
Merged-chr4-135920659-4	chr4	135920573	135920773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024243)	promoter-TSS (NM_024243)	-53.0	NM_024243	71665.0	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	6.33400125974299	5.66392691308331	5.72066000933612	5.8304014166089	6.17697077252929	6.02735148325275	6.19830685385751	6.27931213474442	0.417277752083633	0.11360407873713	0.372688607661435
Merged-chr5-63826112-2	chr5	63825998	63826198	+	830.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	13603.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	2.99858473815203	3.02512367676871	3.06354402980809	3.32553227439977	3.42518398033976	3.17197065153251	3.22763423464899	3.12362824662314	0.467496742919905	0.420043060865578	0.713058060038122
Merged-chr5-96177197-4	chr5	96177095	96177295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-15205.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	6.87996861082986	6.87337686738586	7.28145432766038	7.55232738460497	7.02215094147072	6.8650025005924	7.10717997768893	6.74493871056023	-0.341264903616726	0.149436959175636	0.4316978435357
Merged-chr12-51866492-4	chr12	51866394	51866594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36958.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	7.29582724119456	7.58878486065954	7.34902619519798	7.63029883609149	7.0459840606246	7.44207049992466	7.16175062301074	7.38395200318733	-0.298973708517192	0.130657245958688	0.4023558064417
Merged-chr6-131244688-4	chr6	131244580	131244780	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008462, intron 2 of 7)	intron (NM_008462, intron 2 of 7)	2682.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	5.60236319479765	5.51389779992001	5.4155708444856	5.9743968360364	5.1509411170678	5.30354384873687	5.2993420952189	5.22547394182794	-0.748359047890634	0.0124685527813113	0.0922565304967229
Merged-chr3-8957031-4	chr3	8956934	8957134	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	7112.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	6.57954948320256	6.45515233517035	6.56553651702479	6.80533899390399	6.22030012149907	5.62436935569652	6.51657449698831	6.1060893736498	-0.674134459428286	0.0105662315376916	0.0821601261329856
Merged-chr8-23038649-4	chr8	23038666	23038866	+	894.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277284, intron 1 of 42)	intron (NM_001277284, intron 1 of 42)	3667.0	NM_001277284	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	3.28454086773112	3.05441398936396	3.3472012682166	2.8492672073438	3.66888238397702	3.97227546164108	3.27269967317307	3.66723980823904	1.8536154738569	0.00117943415673949	0.0153531353040528
Merged-chr6-128808717-2	chr6	128808617	128808817	+	891.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17598.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	2.53889465054029	2.78050013023005	2.53911691216481	2.2493487273351	3.1870904012259	2.99945086532231	3.04471391781343	2.94471232241613	2.62727083498265	0.000343958372976486	0.00567120987493475
Merged-chr2-152951633-3	chr2	152951509	152951709	+	829.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145744)	promoter-TSS (NM_145744)	-27.0	NM_001159376	252864.0	Mm.330671	NM_145744	ENSMUSG00000042662	Dusp15	AI851682|LMW-DSP10|T-DSP10	dual specificity phosphatase-like 15	protein-coding	3.47222653179034	3.84361896901533	3.35207255451584	3.54713039143317	3.56782367995175	3.64477883704782	3.45979710038319	3.58107672327211	-0.016444456375419	0.973843497334461	0.990599589807354
Merged-chr6-146686974-4	chr6	146686876	146687076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29758.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	5.96335875755175	6.0029862470238	5.36387647841359	6.34203585525878	6.37839976052152	5.86442441360382	6.46371984672655	6.26339203460848	0.434178223749232	0.152857846007428	0.437292255976959
Merged-chr13-111725527-4	chr13	111725457	111725657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	39379.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	7.50357916630151	7.70784637976943	7.68124491803571	7.69631922641656	8.04819727098596	8.05135487429182	8.54068030724761	8.28695744976475	0.766049347689926	3.3150292201397e-05	0.000791078854220255
Merged-chr17-26237939-4	chr17	26237859	26238059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	6283.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	5.69118534515222	5.40336770300589	5.66823121963029	5.83299071958587	5.56323936574975	5.48152484351527	5.28031790843717	5.3023107602622	-0.431455375409317	0.128704934805456	0.399175971874403
Merged-chr13-28958009-4	chr13	28957911	28958111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4312.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	5.22278966600851	4.95350015355055	5.40984134814789	5.00772225554779	4.42214417137992	4.54528255559716	5.04632563562679	5.19103334354455	-0.624383421423416	0.097209117848708	0.341632274227805
Merged-chr1-138963452-6	chr1	138963288	138963488	+	998.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166501)	promoter-TSS (NM_001166501)	-321.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	4.6873875876753	4.76177026211656	4.43691198890133	4.47494277481144	4.78413590976719	4.82193065018417	4.50578491055048	4.75882459908885	0.28901188361513	0.411691344427647	0.707123186245418
Merged-chr16-36745205-3	chr16	36745102	36745302	+	806.144409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	39760.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	3.30841314321349	3.2459186010868	3.56833357642991	3.59548653160156	3.49446901940078	3.23322378364445	3.04704416280486	3.18677518030952	-0.655929140788167	0.25202447319482	0.563370704652161
Merged-chr16-23235536-4	chr16	23235420	23235620	+	847.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	9499.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	3.53810662239271	3.31065977189972	3.70150785796877	3.67981010999669	3.83075165993949	3.6551967673895	3.52533506919953	3.97296715958466	0.571852547269678	0.250759487199674	0.562014862794619
Merged-chr4-128797045-4	chr4	128796949	128797149	+	927.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 1 of 8)	L1M5|LINE|L1	9063.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	4.25949191518186	4.75441587711486	4.35127819983333	3.77624719573525	4.55989350053594	4.18346345635431	4.37430501345716	4.58819609446393	0.260086239963016	0.56598133940323	0.807783748011785
Merged-chr6-33059769-1	chr6	33059669	33059869	+	1000.0	f1_c57bl6.idr	intron (NM_001355667, intron 1 of 8)	intron (NM_001355667, intron 1 of 8)	491.0	NM_001355667	66075.0	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	3.13928985094299	3.27551055936838	3.19868973581278	3.13112059144474	3.1685454320629	3.05231419741063	3.29565218521091	3.25333872100573	0.043174161123788	0.936753704242091	0.977098357477254
Merged-chr17-15068344-3	chr17	15068255	15068455	+	612.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15296.0	NM_001034891	381062.0	Mm.393767	NM_183133	ENSMUSG00000036552	Ermard	2210404J11Rik|2410011O22Rik|AI448938	ER membrane associated RNA degradation	protein-coding	3.79315774493449	3.50779503194946	3.79373195282377	3.6392668550459	3.3370842814308	3.64875731255443	3.72946535648284	3.69315799394649	-0.252525334524246	0.60849939255735	0.830675049522223
Merged-chr1-52844910-4	chr1	52844795	52844995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146108)	promoter-TSS (NM_146108)	-143.0	NM_146108	227095.0	Mm.222063	NM_146108	ENSMUSG00000041426	Hibch	2610509I15Rik|HIBYL-COA-H	3-hydroxyisobutyryl-Coenzyme A hydrolase	protein-coding	9.38889057486185	9.27621749028515	9.52321195736183	9.55397504740193	9.42434574406455	9.53474600853268	9.80759417374854	9.24571835200008	0.0956509931019189	0.571633792344868	0.810781529929199
Merged-chr7-126652832-4	chr7	126652716	126652916	+	895.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029339, intron 1 of 9)	intron (NM_029339, intron 1 of 9)	3507.0	NM_029339	75565.0	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	4.61873626387826	5.02326496552724	4.36904514489564	3.71396449614162	4.30256064051904	4.82930045676828	4.3491573873955	4.49734332852731	-0.0218408947278911	0.964091762209469	0.987279399851659
Merged-chr1-91250222-4	chr1	91250113	91250313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355761)	promoter-TSS (NM_001355761)	-91.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	8.68617345312946	8.65922581252844	8.61173859505737	8.60755561665347	8.72696937694788	8.91229576624611	8.71110461890768	8.39653292639074	0.0737609317296087	0.650681475012761	0.853415454393465
Merged-chr10-59224118-4	chr10	59223994	59224194	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172939, exon 1 of 1)	3' UTR (NM_172939, exon 1 of 1)	2172.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	5.16505824458862	5.04778119690981	5.31978227352473	5.15932827569057	5.40391460759933	5.09258370247361	5.52830127527882	5.12930156557745	0.248810326465003	0.409199621616142	0.704864717753628
Merged-chr17-33780719-4	chr17	33780614	33780814	+	946.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020581, intron 2 of 6)	intron (NM_020581, intron 2 of 6)	861.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	4.7595435401334	4.94343724252402	5.02303329298717	4.81666230177202	5.44987798779137	5.43958970224987	4.89333334900252	4.75721982104888	0.565808870165191	0.103874979121088	0.354209932974813
Merged-chr4-149323761-2	chr4	149323661	149323861	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10878.0	NR_131918	74310.0	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	3.29538696561258	3.12096283408861	3.24336046367146	2.93021960084571	3.1665584608652	3.11833599184072	2.86554112075405	3.06991424018414	-0.332605504977161	0.574378636044629	0.812296535634513
Merged-chr14-54382819-4	chr14	54382704	54382904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	21963.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	7.35950970263048	7.55375989502987	8.03302448290205	8.04423479382584	6.68010504727103	6.81915146589658	6.9691740889971	6.87439132371517	-1.28678722044657	1.1253215700544e-08	5.9113847996238e-07
Merged-chr3-13866508-1	chr3	13866408	13866608	+	560.0	f0_balb.idr	intron (NM_001357034, intron 2 of 7)	intron (NM_001357034, intron 2 of 7)	-79797.0	NM_001163329	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	3.07632224009497	3.13867341583486	3.01110946826916	3.24748483230537	3.06958364869597	3.42386634657961	3.1868308451352	3.36070690099151	0.496909477145596	0.377280573210775	0.67996861637713
Merged-chr9-57521666-3	chr9	57521577	57521777	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007747, intron 1 of 4)	CpG	445.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	5.72465009190665	5.93991682564911	6.03718241963652	5.56173000943768	5.87196510162693	5.92573211050982	5.41738624625151	5.74657374845472	-0.0956793147308269	0.732831465984875	0.894223505002294
Merged-chr2-129614973-1	chr2	129614873	129615073	+	619.5	f0_balb.idr	intron (NM_001177647, intron 2 of 5)	intron (NM_001177647, intron 2 of 5)	19511.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	3.41317009329696	3.03854332575426	3.41368393631336	3.2754096351957	3.20037430252532	3.0522584377617	2.93579263835823	3.19834014865153	-0.718683360120595	0.21683874270048	0.523576380620064
Merged-chr14-31414314-2	chr14	31414214	31414414	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	3363.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	3.37904318501838	3.40680516949398	3.37947192501871	3.71358538255036	3.50779160075406	3.43274973170647	3.18559664093787	3.43363561131066	-0.314998204344583	0.555461362078225	0.801552524497738
Merged-chr6-120179874-4	chr6	120179776	120179976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-13947.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	6.27860582160697	6.05343347031584	6.09102912325328	6.3236301186686	6.7302388150255	6.60280084139298	6.65731453362659	6.70067226308743	0.695392530178443	0.00131181319571897	0.0167685358058983
Merged-chr15-86203552-5	chr15	86203449	86203649	+	983.2666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10910.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	3.68020536549998	3.60162401068427	3.94297744918715	3.81375621170528	3.91532943006892	3.96621776231065	3.60813416992493	4.34281564829934	0.603065777311969	0.207090616535845	0.511095419520992
Merged-chr11-121747166-4	chr11	121747067	121747267	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44740.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	5.15875431180216	5.17829253459324	5.50970430625783	5.2156500653635	5.12476604522652	5.49091345963237	5.53133959332249	5.08719255552368	0.0885381301019727	0.773160279472563	0.911211873289787
Merged-chr3-107334020-4	chr3	107333917	107334117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045807)	promoter-TSS (NM_001045807)	-728.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	8.24212577936935	8.53369973611553	8.1437281805862	8.43542904242506	8.57232104371282	8.52468610592678	8.8304575651853	8.37945052233787	0.296402002411163	0.0930624395516348	0.333716294940811
Merged-chr7-45570378-4	chr7	45570285	45570485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243052)	promoter-TSS (NM_001243052)	232.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	5.8241480348803	5.33532959424801	5.59803221479255	5.53671179843243	5.22868308138584	5.18650179676212	5.16440514707558	5.51703821735598	-0.526841893163532	0.0737823643765454	0.292560576790046
Merged-chr11-51349829-4	chr11	51349735	51349935	+	912.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153393, intron 2 of 28)	intron (NM_153393, intron 2 of 28)	59915.0	NM_153393	237759.0	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	4.43380188195561	4.28295630503987	4.26096202379155	4.51902324982573	4.22636502383859	4.38809621002826	4.56512936548946	4.16213386103351	-0.113091118332214	0.772037688685816	0.910720428289156
Merged-chr16-93091062-4	chr16	93090965	93091165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	262124.0	NR_040486	69857.0	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	5.77884377631521	5.4839532617658	6.15496101428841	6.25256417268395	6.05108173430744	5.61042018843468	6.29992366827931	6.18810154052858	0.156484621481283	0.604556980906733	0.828505773002183
Merged-chr1-182506746-3	chr1	182506653	182506853	+	920.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009794, intron 2 of 20)	intron (NM_009794, intron 2 of 20)	10857.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	4.23798779550838	4.30023961192532	4.05842077619063	4.15219210451181	3.98817725337312	4.02617111754143	3.99255508458528	4.10344390350115	-0.4275581270969	0.295261930975441	0.607360011623083
Merged-chr15-95768942-4	chr15	95768844	95769044	+	880.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17353.0	NR_131148	629300.0	Mm.247258	NR_131148	ENSMUSG00000115699	Gm6961	EG629300	predicted gene 6961	ncRNA	4.44678616435982	4.10940476844118	4.40980023742642	4.31067225168803	3.97838618808267	3.90067180709116	4.22732521623306	4.10590837642082	-0.676195863613245	0.102104594700104	0.350811863834884
Merged-chr11-115641361-4	chr11	115641243	115641443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13048.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	8.52044388585871	8.76109428736485	8.19483421584438	8.18758107183583	8.55043203427502	8.71879146400484	8.41866802295004	8.31944658905104	0.0931860705957882	0.630908188531589	0.843094226067586
Merged-chr1-106714394-4	chr1	106714291	106714491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177410)	promoter-TSS (NM_177410)	-101.0	NM_177410	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	6.47013070862498	6.51916025102889	6.66992747776304	7.07622130641944	6.62553398780375	6.89134982675343	6.90879121485269	6.64977477818544	0.062734386977645	0.792608951312648	0.919627897475503
Merged-chr15-67514248-4	chr15	67514147	67514347	+	978.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	287478.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	5.07695699462942	5.13322568475693	5.14496037388976	5.12067483824657	5.44634285532048	4.99061816743949	5.3823175976527	5.20516414329231	0.295856526227488	0.324497957824395	0.636100359119347
Merged-chr8-117158525-4	chr8	117158424	117158624	+	961.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081151, intron 1 of 10)	CpG	389.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	5.39125521030492	4.93549469475679	5.14331284418636	4.77158012120672	4.98094769910645	4.75685130427953	4.77064554951649	5.19945137818364	-0.240922479436805	0.49231926036317	0.763405929571789
Merged-chr10-58529483-4	chr10	58529363	58529563	+	970.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162956, intron 10 of 15)	MTD|LTR|ERVL-MaLR	31526.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	4.55729608158031	4.79183000641689	4.41145566130172	4.66106973577823	5.43225421164856	5.09346222498959	5.08894219735621	4.98472901838279	1.0925601163898	0.00125416078238629	0.0161370047594854
Merged-chr9-103337157-4	chr9	103337057	103337257	+	966.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176979, intron 19 of 27)	intron (NM_176979, intron 19 of 27)	27822.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	4.78700984132859	4.72458563933144	4.74551754167972	4.88523626970609	5.46462317676358	5.12099323707952	5.27026615363427	5.52217824147501	1.06380266828797	0.000641249261269533	0.00941314378976262
Merged-chr6-116456002-4	chr6	116455927	116456127	+	888.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009662, intron 1 of 13)	intron (NM_009662, intron 1 of 13)	5151.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	5.63670593448954	5.62468044477076	5.98477643029644	5.9047611011537	4.48362152187265	4.80558395041842	5.09650484559273	4.75664038157399	-1.88305321393506	7.81813485143313e-09	4.22541397562763e-07
Merged-chr6-90370402-2	chr6	90370302	90370502	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030260, exon 1 of 6)	exon (NM_030260, exon 1 of 6)	908.0	NM_030260	80292.0	Mm.100116	NM_030260	ENSMUSG00000034430	Zxdc	A930012H20|B930086F11Rik|BC003332	ZXD family zinc finger C	protein-coding	3.20623118288765	3.26396083595703	3.20659969740649	3.31933819575891	3.37848123879623	3.49899210515604	3.5262120258609	3.4893427031783	0.750472553923179	0.142253633997918	0.419760857903068
Merged-chr7-25317468-2	chr7	25317368	25317568	+	959.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001160400, exon 1 of 41)	5' UTR (NM_001160400, exon 1 of 41)	304.0	NM_001160400	269878.0	Mm.38527	NM_001160400	ENSMUSG00000045039	Megf8	AW049492|Egfl4|b2b1702.2Clo|b2b1702Clo|b2b288Clo|m687Ddg|mKIAA0817	multiple EGF-like-domains 8	protein-coding	3.0947949171664	2.87237041308074	3.53263599888202	2.71690119498369	2.71664757296773	2.87912119764327	3.02404323636204	2.9722727797293	-0.775351297755557	0.249682885047274	0.560742666586102
Merged-chr12-102439829-4	chr12	102439717	102439917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011175)	promoter-TSS (NM_011175)	-4.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	8.70672011740198	8.79429657659209	8.78772907957082	8.72369269296275	8.66039401501309	8.92003476719054	8.90754789272722	8.77811520171442	0.0803613201603306	0.584327429209477	0.817562205564865
Merged-chr17-74338698-4	chr17	74338562	74338762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162870)	promoter-TSS (NM_001162870)	-325.0	NM_001357738	50850.0	Mm.19804	NM_016962	ENSMUSG00000024068	Spast	Spg4|mKIAA1083	spastin	protein-coding	6.11027927119114	6.07995549953063	6.00599900975424	6.23828493723485	5.83039088508968	6.04368393092187	5.99703731809566	6.25898062855649	-0.137218122288563	0.572612804045441	0.811251013052168
Merged-chr3-86758795-3	chr3	86758692	86758892	+	804.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077688, intron 53 of 54)	intron (NM_001077688, intron 53 of 54)	162092.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	3.78564342796422	3.64292419782197	3.88348348795033	4.11292200380222	3.62003148285596	3.79868270768334	3.66664238045814	3.67887640969206	-0.575133530571134	0.225799622108928	0.534368165112591
Merged-chr19-4338395-4	chr19	4338289	4338489	+	843.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001984, intron 12 of 20)	B3A|SINE|B2	-32167.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	4.38092973268502	4.04848168342173	3.90433100886045	3.95923981093573	4.15288514806792	4.02627599191688	3.83553947210529	3.9021285210448	-0.2336714283559	0.596865820284841	0.824985875654518
Merged-chr10-34195061-4	chr10	34194955	34195155	+	985.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	12496.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	4.64035190586314	4.47689305562713	4.67966638161481	4.84943970335474	4.94827304186039	4.5592637085131	4.73073680782551	4.22751709757949	-0.0459260688584453	0.905591679240572	0.964916319169902
Merged-chr11-83058096-3	chr11	83057995	83058195	+	861.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7017.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	3.97414829623771	3.9035244221587	4.02243412061667	3.84533539683283	3.987904564581	3.94047512622767	4.05048949864294	4.11021760992365	0.256256169550529	0.53997254963085	0.792440690679099
Merged-chr12-110419019-4	chr12	110418972	110419172	+	831.766663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-28107.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	3.07204416261039	3.32006722392854	3.25519519501886	2.82212733841101	3.09951688886469	3.18482367412341	3.18483269116986	3.55534170593795	0.536091088693202	0.365990187061928	0.67060044597732
Merged-chr10-120191373-1	chr10	120191273	120191473	+	731.25	f0_c57.idr	intron (NM_001359184, intron 1 of 11)	intron (NM_001359184, intron 1 of 11)	10224.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	2.95365770646939	3.31341369806895	3.03513675865472	2.7071352371893	3.89301175749563	3.68407128967869	4.03276073709745	3.93440210838446	3.26673968565032	2.51089798042256e-08	1.22665207514411e-06
Merged-chr8-84687021-6	chr8	84686910	84687110	+	876.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025788, intron 1 of 5)	intron (NM_025788, intron 1 of 5)	852.0	NM_025788	66830.0	Mm.289698	NM_025788	ENSMUSG00000001910	Nacc1	2010001H03Rik|4930511N13Rik|Btbd14b|Nac1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	protein-coding	3.09886315432053	2.88229804066412	2.76379549240426	2.80506671251757	3.19586543635908	3.2116061528222	3.25190058418839	3.26404668841772	1.40584963967862	0.0142877166548438	0.10136403705523
Merged-chr17-74159703-4	chr17	74159616	74159816	+	921.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111800.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	4.35499878376209	4.26468153957422	4.5777005323745	4.72600597334923	4.5309360920669	4.38512847024781	5.17999150240665	4.76382661513196	0.523976380875019	0.197490791925957	0.498889061237808
Merged-chr15-6501045-4	chr15	6500970	6501170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55737.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	6.19468560940005	6.30354471904717	5.91660706683074	6.24195997862788	6.3890650577892	6.04534889938262	5.8624689824097	6.15225021933766	-0.061966059132644	0.805329273359767	0.925171083261684
Merged-chr14-52004242-4	chr14	52004125	52004325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198249, intron 21 of 23)	intron (NM_198249, intron 21 of 23)	10333.0	NM_001253695	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	5.4710611550679	5.19153655328064	5.08736495886085	5.28228845658013	5.68799490624846	5.59003582519762	5.38831177397706	5.7842249530437	0.623371545535463	0.0279969953653616	0.160089824318049
Merged-chr1-34867432-4	chr1	34867349	34867549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145516, intron 6 of 7)	intron (NM_145516, intron 6 of 7)	17460.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	5.78667994627303	6.21333980838	5.56449312145532	5.91116933749114	6.14851090081165	6.13108006606418	6.29020665343518	5.92858940763167	0.366287246995183	0.163284537771061	0.452904298729887
Merged-chr1-148920530-1	chr1	148920430	148920630	+	1000.0	f0_balb.idr	Intergenic	Intergenic	1001909.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	3.56808492689604	3.54957344019921	4.54168411515228	4.43653962726021	3.20115257243872	3.62630811681102	3.9769422789879	3.43540353105841	-1.4527578488747	0.0187168362091885	0.122460307430263
Merged-chr17-29049253-4	chr17	29049158	29049358	+	790.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16598.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	3.37399481036634	3.70282814504685	3.43368873290767	3.35343888751371	3.55975286724673	3.71406006711443	3.53045332786642	3.37273465675845	0.261214308215989	0.605146664586593	0.828698063423653
Merged-chr8-71294202-4	chr8	71294085	71294285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	21471.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	6.43347923825505	6.35681492329157	6.40308612943146	6.45638848126351	5.9596308501869	5.45351968245973	5.3151147157204	5.87036132891956	-1.12815914093168	3.0852890467698e-05	0.000744938226119497
Merged-chr6-134673892-4	chr6	134673783	134673983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170479, intron 2 of 3)	MTEa|LTR|ERVL-MaLR	32943.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	5.60896888851595	5.09503916440561	5.19910520383666	5.75124436781951	6.14055952755428	5.83894849936401	6.17134822710152	5.70982090659841	0.858298549051356	0.00532962553415485	0.0498236690170223
Merged-chr11-19955874-4	chr11	19955767	19955967	+	963.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	B4|SINE|B4	31425.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	4.62470879133109	4.66138717545059	4.77783831369474	4.51106800896825	4.81529286339078	4.48716767899869	5.03970870271127	4.53899793381189	0.229001237220799	0.525154270516257	0.783229855070132
Merged-chr4-141872247-4	chr4	141872138	141872338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	2682.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	5.55080378558441	5.91031773108062	6.11049041464213	6.01449789436884	5.99791868291433	5.87353567758687	6.22630328920205	6.02507401444652	0.183572192905614	0.477384315638678	0.753564672288775
Merged-chr8-69808855-8	chr8	69808767	69808967	+	993.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198101, intron 1 of 20)	intron (NM_198101, intron 1 of 20)	180.0	NM_198101	78816.0	Mm.324305	NM_198101	ENSMUSG00000036246	Gmip	5031419I10Rik	Gem-interacting protein	protein-coding	3.82397374583701	3.68053879999191	4.34436094753016	3.55337873829601	4.08359438046289	3.89144979598943	3.91042147253634	3.97333633671928	0.259950291726097	0.593047184172194	0.822473173336168
Merged-chr2-126673561-4	chr2	126673450	126673650	+	865.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271470, intron 1 of 8)	intron (NM_001271470, intron 1 of 8)	1802.0	NM_001355109	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	3.95793935491312	3.52760092807921	3.81814824470885	3.5580576676571	4.26527517367199	3.46375414514646	3.46940248148564	3.9110103610912	0.315333351499539	0.560330832179302	0.804393115014757
Merged-chr5-99342662-4	chr5	99342564	99342764	+	946.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	ORR1B1|LTR|ERVL-MaLR	-89737.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.76457683281695	4.92282675116696	4.4145159863229	4.49956233405624	4.70695890638725	4.18282628463589	4.30298144910303	4.4983836642571	-0.470459042623497	0.239582429532024	0.5500512128394
Merged-chr7-16816277-4	chr7	16816167	16816367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133789, exon 1 of 18)	5' UTR (NM_133789, exon 1 of 18)	378.0	NM_001039878	97387.0	Mm.21612	NM_133789	ENSMUSG00000030374	Strn4	C80611|ZIN|zinedin	striatin, calmodulin binding protein 4	protein-coding	5.50206312370584	5.59612977886614	5.68985760520823	5.42261786561719	5.68726434558898	5.95829014608909	5.70934849703027	5.49916826284864	0.293223139868248	0.2765218142422	0.588504895079849
Merged-chr15-80035054-4	chr15	80034962	80035162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20254.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	7.06583162363239	7.1350455829812	7.13645244721371	7.20558579748017	7.06475695146818	7.03788751953997	6.9582661830182	6.53903310265217	-0.302247390517126	0.14072758098561	0.417299137101096
Merged-chr5-139380956-1	chr5	139380856	139381056	+	1000.0	f0_c57.idr	TTS (NR_033147)	TTS (NR_033147)	317.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	6.33293120236627	6.28221446858213	6.4711074181543	6.28340273774128	6.10231827786122	6.13595120188032	6.26507310044489	6.64727581731967	-0.0574425157941929	0.810322356960597	0.92679579587174
Merged-chr9-92250575-4	chr9	92250428	92250628	+	993.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011636, intron 1 of 8)	CpG	334.0	NM_011636	22038.0	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding	5.80068572483392	5.75654888966654	6.39319077874826	6.4278825276028	5.5187198775075	5.68093376980458	5.77206648643336	5.4013504051126	-0.882555744274463	0.00291159659220782	0.0312397548743987
Merged-chr11-85170240-4	chr11	85170139	85170339	+	910.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028589)	promoter-TSS (NM_028589)	-857.0	NM_028589	73634.0	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	4.0349779865878	3.96662620577605	3.92932183897857	3.85192566457912	4.389593220499	3.99658575432068	4.58029895468889	4.46258874071752	1.10520198835204	0.00719018552247761	0.0621255420374404
Merged-chr1-52765405-4	chr1	52765311	52765511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38053.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	6.36347204310395	5.90885885160011	6.71002291958067	6.4628660865617	5.50052400329996	5.67455430499847	5.87904410875149	5.97457308965853	-0.983326922668468	0.000474924672158596	0.00741005331862707
Merged-chr4-56757466-4	chr4	56757374	56757574	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026079, intron 34 of 36)	intron (NM_026079, intron 34 of 36)	14052.0	NM_009611	11470.0	Mm.30959	NM_009611	ENSMUSG00000070979	Actl7a	Tact2	actin-like 7a	protein-coding	5.33781085955056	4.89603382169509	5.09289297279636	5.37130172633678	6.86525974417492	6.87597046306104	7.16895461775594	7.06008720398406	2.73151132546833	3.65960525850908e-23	1.8606217335387e-20
Merged-chr10-82923705-4	chr10	82923608	82923808	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	57082.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	4.95797582128094	4.96128846594303	5.1991027364384	5.74116931771656	5.00589320781583	4.8013416886217	5.17336664909577	5.49947948072525	-0.245093363688537	0.511946631124982	0.775668292015302
Merged-chr2-154658068-4	chr2	154657956	154658156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	1030.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	7.13343804109413	7.4594520066923	6.99348680383955	7.3236477391808	7.48887280648311	7.69557981560566	7.62450625737721	7.41115952599496	0.412741918693747	0.0331612508453749	0.178857670222243
Merged-chr14-79481142-5	chr14	79481059	79481259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007920)	promoter-TSS (NM_007920)	-35.0	NM_007920	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	6.77786810438263	6.98980788889512	6.6914330248795	6.62124189732579	6.80352196583262	7.03677170065529	6.42660262453081	6.62469752142992	-0.0437583106807642	0.8474888181645	0.942302928724103
Merged-chr2-29788252-4	chr2	29788145	29788345	+	923.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290496)	promoter-TSS (NM_001290496)	-574.0	NM_001290495	227682.0	Mm.245739	NM_145520	ENSMUSG00000039826	Trub2	G430055L02Rik	TruB pseudouridine (psi) synthase family member 2	protein-coding	4.44515537913864	4.67132391946235	4.25335589262519	4.44245301489169	4.92408537902708	4.78553847856681	4.59202775372598	4.61054625462695	0.60645554004813	0.0935726470374148	0.334643392628053
Merged-chr17-71598773-4	chr17	71598701	71598901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015549)	promoter-TSS (NR_015549)	-40.0	NR_027952	68789.0	Mm.75202	NR_015549	ENSMUSG00000085492	Trmt61b	1110039F03Rik|623451|Gm6431	tRNA methyltransferase 61B	ncRNA	7.48093964678023	7.44258335484685	7.42340828411352	7.59415400803849	7.83481039981787	7.6691119942708	7.695303871908	7.73553563299898	0.322821672025517	0.0552317098690161	0.24572207448995
Merged-chr15-76758583-3	chr15	76758485	76758685	+	910.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 2 of 10)	intron (NM_198420, intron 2 of 10)	-34740.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	3.8119668782322	3.48320317852396	3.3206819544365	3.71321903108023	3.67842396547564	3.78638655962305	3.43484911632111	3.61456251122823	0.103055516650939	0.838728251373328	0.938853173799904
Merged-chr2-39005110-4	chr2	39004989	39005189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025592)	promoter-TSS (NM_025592)	42.0	NM_025592	66489.0	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	7.44125279169836	7.22990314800532	7.92149615056136	7.15118470898889	7.44115805170919	7.15905036589134	7.2666998549471	7.15315434423067	-0.266435808034854	0.245508539236027	0.556601233095974
Merged-chr16-55754594-4	chr16	55754491	55754691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67547.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	7.33066201643187	7.79821814435655	7.40437780416993	7.65118088720067	7.61199006978264	7.76800659887334	7.49162145353929	7.227114850795	-0.03486569553358	0.864863467376018	0.949295808161007
Merged-chr2-11596834-4	chr2	11596711	11596911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 3 of 11)	intron (NM_152824, intron 3 of 11)	6388.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	7.07644995334835	7.48819492264489	7.47684333455261	7.21180138868278	7.50955245636228	7.04024235717517	7.18177150695036	7.16771925595193	-0.102153549227528	0.624218537868078	0.83935232045714
Merged-chr10-127744742-3	chr10	127744665	127744865	+	907.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198035, exon 2 of 2)	3' UTR (NM_198035, exon 2 of 2)	5227.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	3.70628257107204	3.87516249207158	3.59070233205203	3.48584917692107	3.88712262978151	3.9347326572263	3.94100494834502	4.08621998655259	0.872218861791646	0.0539674898945011	0.242570848901281
Merged-chr6-72132982-1	chr6	72132882	72133082	+	565.0	f0_balb.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-9785.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	3.45766926119448	4.18911308384961	3.62964949910997	3.46458689119204	3.85966533696022	3.44533125399491	3.61491353238458	3.32865913822315	-0.421030299020769	0.454508735425951	0.738348486372188
Merged-chr17-12318807-4	chr17	12318711	12318911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045290)	promoter-TSS (NR_045290)	-15.0	NM_001357722	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	7.07736649118323	7.30346798671761	7.25654642736208	7.65717014238646	7.40223195990898	7.55980654538083	7.51370153184873	7.53693479545404	0.190578600836944	0.344115303269354	0.652610656810439
Merged-chr17-27650332-4	chr17	27650245	27650445	+	847.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5246.0	NM_011861	23969.0	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	3.88611590613057	3.99464206579082	3.93846066433911	3.8446328962244	3.9502981708093	4.29586215286206	3.92209166058854	4.16749847781975	0.469118551630691	0.268962883714434	0.580523655161311
Merged-chr9-55310366-4	chr9	55310250	55310450	+	975.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16563.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	5.38206713876556	4.88291649694663	5.84189033770664	5.31956173895859	4.70330421204136	5.22877215486945	4.58630892953207	4.60421090557763	-1.13380636983497	0.00315333654718296	0.0331930408299225
Merged-chr3-116424028-4	chr3	116423965	116424165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080818)	promoter-TSS (NM_001080818)	-33.0	NM_001173553	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	6.37924084458542	6.36070673900429	6.25109586333252	6.31796926947771	6.42518534755957	6.34736662007471	6.39907747562316	6.28488976844091	0.0609845813570546	0.775402238137939	0.912324026026444
Merged-chr10-121596752-4	chr10	121596580	121596780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 22 of 24)	intron (NM_001359618, intron 22 of 24)	-9886.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	6.52574299586593	6.10658186882698	6.4452145041233	6.67751242978494	6.39809450078364	6.0864205602844	6.7358267223584	6.09319599325356	-0.151363248974576	0.566048884325703	0.807783748011785
Merged-chr11-69672502-4	chr11	69672411	69672611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144958)	promoter-TSS (NM_144958)	-88.0	NM_001159375	13681.0	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	9.25876139747162	9.4308443162791	9.19663401133675	9.10243088209786	9.1716039556851	9.20520124068985	9.19607604160565	9.08079434511481	-0.106537828840038	0.465714683719986	0.746147736117787
Merged-chr17-17648943-4	chr17	17648825	17649025	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24436.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	3.50670483601358	3.6565751482927	4.2997691331385	3.97948374042422	3.64559713935949	3.80390101487997	3.97279847370256	4.03209621398049	-0.0852032444195141	0.866832018314261	0.950126060327242
Merged-chr7-29491211-3	chr7	29491110	29491310	+	955.361084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081028, intron 2 of 22)	intron (NM_001081028, intron 2 of 22)	14250.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	4.10631924025158	3.75400685578608	3.84273884489039	3.59334770609166	4.54373584606211	4.41525696489455	4.42055705947037	4.19670924425339	1.52356489485497	0.000312094085307583	0.00523456637178235
Merged-chr7-30323158-4	chr7	30323060	30323260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033140)	promoter-TSS (NM_001033140)	-785.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	7.76558308946273	7.72173549166291	7.66785081205373	7.02558933566228	6.57257225473259	6.66620576437809	6.33383919257879	5.95509953393746	-1.60963328821831	1.22074136034371e-09	7.73741311557481e-08
Merged-chr9-90113121-4	chr9	90113049	90113249	+	923.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 1 of 12)	intron (NM_001039147, intron 1 of 12)	1671.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	3.95896891881778	3.71348741471414	4.14839522757272	3.87173357343919	4.04359071278727	4.08281193814562	4.12968060031187	4.30985921985746	0.578728144766615	0.17317445102972	0.467177447069859
Merged-chr11-70674715-4	chr11	70674612	70674812	+	918.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178116, exon 15 of 23)	exon (NM_178116, exon 15 of 23)	-5296.0	NM_001167669	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	4.17628126056415	4.04749833990355	4.26383765872844	4.20535334331584	4.17945656597792	4.30222661357901	3.96707009858758	4.03201058823673	-0.124572632497466	0.759440135206624	0.905638317712331
Merged-chr14-103234378-1	chr14	103234278	103234478	+	744.0	f0_balb.idr	intron (NM_207215, intron 26 of 84)	L2a|LINE|L2	112422.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	3.10935449617599	3.00855207092653	3.28093739454168	3.43126549990562	2.85473725116294	3.15699123780401	3.31912286989659	3.04583785494153	-0.485731095451724	0.421119055535827	0.713739716236704
Merged-chr13-35741305-4	chr13	35741210	35741410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001123386)	promoter-TSS (NM_001123386)	-92.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	7.45382447518277	7.5605947828822	7.29196168250626	7.40267942728309	7.6836291843463	7.50107205251975	7.69158393037706	7.4403300622847	0.208854206716153	0.240348038054714	0.550870712287303
Merged-chr1-131431630-4	chr1	131431526	131431726	+	775.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 3 of 22)	intron (NM_001081011, intron 3 of 22)	95735.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	3.55721536701223	3.83990209622364	3.612130432518	3.26315248975117	3.81951971710505	3.49425461406983	3.54382831320544	3.66223078373421	0.209026749738673	0.685516442236824	0.871421488766206
Merged-chr13-105294298-4	chr13	105294113	105294313	+	978.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 1 of 7)	CpG	272.0	NM_001360890	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	4.35906116207561	4.69567776122413	5.15438754912462	4.74912624169097	4.34608276367399	4.67889739811487	4.79504625485602	4.74306746844563	-0.261176417656993	0.499744059542166	0.768477411297785
Merged-chr12-91592316-4	chr12	91592203	91592403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1816.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	7.9806425414064	8.11649756186919	7.89064766625701	7.99555618773364	7.9619966121297	7.89662430180057	7.74646851452737	7.75491123122241	-0.197903994503817	0.228690357218098	0.537509937142616
Merged-chr11-62127912-3	chr11	62127811	62128011	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029936, intron 2 of 12)	intron (NM_001029936, intron 2 of 12)	50887.0	NM_001029936	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	3.40219260901206	3.5156948180019	3.14906120353434	3.43930080604068	3.76862257252973	3.5737605791968	3.39003020783967	3.45720814967821	0.574879853178551	0.270571167816101	0.582387890591862
Merged-chr7-18892407-4	chr7	18892322	18892522	+	821.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033314, intron 10 of 13)	CpG	7732.0	NM_009402	21946.0	Mm.21855	NM_009402	ENSMUSG00000030413	Pglyrp1	PGRP|PGRP-S|Pglyrp|Tag7|Tasg7|Tnfsf3l	peptidoglycan recognition protein 1	protein-coding	3.60360561749787	3.73516816853143	3.70904217886541	3.74281724052405	3.90176172382824	3.47773641506309	3.59025801957205	3.5463823178872	-0.151060120693152	0.756337069628452	0.904248123472918
Merged-chr6-115901257-4	chr6	115901141	115901341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167763, intron 15 of 28)	intron (NM_001167763, intron 15 of 28)	-30686.0	NM_145383	212541.0	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	6.77344256425222	6.99943213184241	6.88593216727803	6.7302238782504	7.11272525488674	6.69554858894046	6.81061247618563	6.97088940145753	0.0989600154924254	0.633886321083021	0.844900836080454
Merged-chr1-31034132-4	chr1	31034027	31034227	+	914.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136907, intron 2 of 3)	intron (NR_136907, intron 2 of 3)	62327.0	NR_136907	102634473.0	Mm.484482	NR_136907	ENSMUSG00000100371	Gm29669	-	predicted gene 29669	ncRNA	4.47767172036412	4.1549395918456	4.56973048192176	4.64275673858063	4.41236580516942	4.98633786452101	5.21528961895837	5.45314301779443	1.19504747022159	0.0040247995233745	0.040248519958302
Merged-chr11-68691318-1	chr11	68691218	68691418	+	1000.0	f0_balb.idr	promoter-TSS (NM_175260)	promoter-TSS (NM_175260)	-597.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	5.34065960913348	5.31121007023703	5.19164101955724	5.20525603023032	5.26387560167004	5.04649059505514	5.06778339302341	5.30929197691932	-0.141571360201488	0.630407564897858	0.842836643473105
Merged-chr6-114893993-4	chr6	114893907	114894107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	27814.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	7.95425197417468	7.99398837457096	7.81944687865859	7.70597086881702	7.75287027304659	7.7371730282018	7.91053840506467	7.57286307539949	-0.154059615949693	0.379787249460163	0.682282195090949
Merged-chr2-3659698-3	chr2	3659580	3659780	+	637.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53778.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	3.44733905589563	3.46254610155885	3.50231786179317	3.19702732965329	3.52062862951599	3.61846257608178	3.37823206093078	3.44592489707715	0.336622193804027	0.508516572951113	0.773535236506654
Merged-chr9-53703212-4	chr9	53703121	53703321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175562, intron 1 of 1)	PB1D10|SINE|Alu	3011.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	5.37812465337233	5.64987235053559	5.25232731793079	5.61011992674968	5.50883126066421	5.29126628702107	5.52030497415456	5.66964670145038	0.017213835728566	0.951872055428056	0.982868085362717
Merged-chr10-81520227-4	chr10	81520136	81520336	+	948.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010304, intron 1 of 6)	intron (NM_010304, intron 1 of 6)	3989.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	4.76258737167844	4.44693393757697	4.76336523926549	4.67086380267869	4.86865375196732	4.97366935237899	4.74086144141521	5.09224338009913	0.531963318259994	0.113821412081463	0.373103335015803
Merged-chr17-28692092-4	chr17	28692014	28692214	+	925.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357724)	promoter-TSS (NM_001357724)	-454.0	NM_001168513	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	4.75277548939727	4.79973790134114	4.43701406144188	4.21288032160012	4.72753358726587	4.61258212285404	4.46088513218276	4.60207785454319	0.109423557941272	0.776484073504536	0.912932991254018
Merged-chr5-134455629-4	chr5	134455535	134455735	+	949.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081462, intron 1 of 29)	intron (NM_001081462, intron 1 of 29)	627.0	NM_001081465	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	4.41295232271928	4.5690534359362	4.49730358977873	4.59761470148623	4.3522107423664	4.35524632914263	4.2103136521583	4.68187228816742	-0.270422025270508	0.472991548006432	0.751004143563305
Merged-chr1-107402295-4	chr1	107402190	107402390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20399.0	NM_027548	116872.0	Mm.66015	NM_027548	ENSMUSG00000067001	Serpinb7	4631416M05Rik|megsin|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 7	protein-coding	5.63729294434594	5.24704504071603	5.28272415378591	6.00679130454391	5.68649143574992	5.83815525931692	5.82188725490823	5.52648475818097	0.19449046036015	0.536822695462102	0.790738613941833
Merged-chr7-81860759-4	chr7	81860649	81860849	+	965.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111910, intron 1 of 7)	intron (NR_111910, intron 1 of 7)	1748.0	NM_145375	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	5.44005234847139	5.02825383850593	5.03686536730439	5.57670730755176	4.80826612076293	5.21443374206109	5.43963407960898	5.46346092028263	-0.10345989958623	0.76475843909408	0.907812114625849
Merged-chr5-45856171-4	chr5	45856064	45856264	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359873, intron 1 of 4)	intron (NM_001359873, intron 1 of 4)	388.0	NM_001359872	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	4.93924307488544	4.68712031387987	4.46597965115372	4.86390772499086	4.78118694818715	4.64540707639358	4.81382577483942	5.12019331690969	0.189093420700116	0.591885377983893	0.821848634889742
Merged-chr11-118222552-4	chr11	118222451	118222651	+	953.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-9809.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	5.03970460096669	4.65600042864025	5.00870154145434	5.30588771928786	4.63483124275118	4.42615315021056	4.61534361372693	5.1568389424015	-0.596897845330257	0.119077145071112	0.381826836157163
Merged-chr3-96661681-4	chr3	96661595	96661795	+	765.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302471, intron 27 of 29)	intron (NM_001302471, intron 27 of 29)	-8436.0	NM_001356539	213121.0	Mm.39732	NM_001081139	ENSMUSG00000038354	Ankrd35	4732436F15Rik	ankyrin repeat domain 35	protein-coding	3.89462464424475	3.69660660453432	3.74521560328773	3.69811314979467	3.91901003684873	4.10904399942049	3.62096494144372	3.63270803966115	0.237817628425597	0.610317644991972	0.831595076242652
Merged-chr7-46825182-3	chr7	46825066	46825266	+	714.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-20638.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	3.56514058249067	3.49123338483532	3.56560802270524	3.39022426018312	3.97011286272196	3.90207523190485	3.60856407873545	4.04541601016228	1.21341953608427	0.00935843330693614	0.0753107885081297
Merged-chr5-3224056-3	chr5	3223954	3224154	+	771.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119839.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	3.98900317966483	3.90005019117811	3.69595609005421	3.66449424493117	3.82592536284412	3.75744248396756	3.73477485494323	3.79930244920465	-0.083661449139459	0.854231967064485	0.945091040532253
Merged-chr15-98089553-4	chr15	98089457	98089657	+	959.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144851, intron 1 of 17)	intron (NM_144851, intron 1 of 17)	-3032.0	NM_001163488	18642.0	Mm.272582	NM_021514	ENSMUSG00000033065	Pfkm	AI131669|ATP-PFK|PFK-A|PFK-M|Pfk-4|Pfk4|Pfka|Pfkx	phosphofructokinase, muscle	protein-coding	4.52674751256673	4.50593106702304	4.39877243661676	4.27515398961448	4.98133603967742	4.81506665539456	4.37912946057115	4.20229841456073	0.488656789423708	0.22608083666612	0.534660371887094
Merged-chr11-85250511-4	chr11	85250391	85250591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	15325.0	NR_028329	654810.0	Mm.209580	NR_028329	ENSMUSG00000085628	Appbp2os	D630032N06Rik	amyloid beta precursor protein (cytoplasmic tail) binding protein 2, opposite strand	ncRNA	6.0214863075422	5.88350907043064	6.47004680642334	5.96693970899397	5.56405226834712	6.0443101135889	5.49334414410713	5.68903912889839	-0.628129915983341	0.0268378441925529	0.155745254001826
Merged-chr11-84522803-3	chr11	84522702	84522902	+	884.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008498, intron 1 of 4)	CpG	2732.0	NM_008498	16869.0	Mm.4965	NM_008498	ENSMUSG00000018698	Lhx1	Lim1	LIM homeobox protein 1	protein-coding	4.55916709403568	4.1870518356834	4.1692039684783	4.34979151107412	3.54638794747332	4.20033279411114	3.84599313402212	4.2115060898237	-0.922728499295843	0.0483031005021204	0.226881773171468
Merged-chr10-77531912-4	chr10	77531806	77532006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	1558.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	7.22008106290784	7.56029455114468	7.5360223912434	7.32215704378247	7.19322726903957	7.40959474243903	7.17401782781376	7.17076528563735	-0.238580228650984	0.206246456140586	0.510210725476936
Merged-chr15-74920838-4	chr15	74920753	74920953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34198.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	5.7912189117501	6.23430268762005	5.9919559732079	6.34113998741548	6.43641251247481	6.43679838207106	6.22960045967605	6.25719260650973	0.330278364191923	0.182753547751795	0.479459466124545
Merged-chr4-41377800-4	chr4	41377698	41377898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355509, intron 3 of 5)	intron (NM_001355509, intron 3 of 5)	25835.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	6.78145273973528	6.66968834173634	6.8628662277975	6.67652551549566	6.69199688107579	6.73294954631346	6.22741528980087	6.70684089151367	-0.195767610492148	0.372111472424611	0.67605651493244
Merged-chr18-9495166-4	chr18	9495078	9495278	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-45024.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	5.73142814051305	6.14483211052007	5.97560124837208	5.44799958333737	5.82395763097954	5.37674990865755	5.60238200537819	5.2975688903358	-0.480046711683645	0.123409714333516	0.389542352840148
Merged-chr9-107976210-2	chr9	107976110	107976310	+	673.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_023738, intron 3 of 23)	intron (NM_023738, intron 3 of 23)	643.0	NM_023738	74153.0	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	3.33339067480646	3.19818788118779	2.85666455207311	2.76177812431558	3.23993359710119	3.1678204797004	3.04552931628496	3.05497451472478	0.313974967813271	0.610103668067345	0.831480604069954
Merged-chr4-136180161-4	chr4	136180051	136180251	+	973.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305399)	promoter-TSS (NM_001305399)	-631.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	4.77905592880047	5.23868836306277	4.51208798460686	4.64655899161391	5.14046499725272	5.30294883482772	5.1357752502652	4.99861334703572	0.634572573783671	0.0685461589947537	0.279616363005337
Merged-chr8-79492047-1	chr8	79491947	79492147	+	898.0	f0_balb.idr	Intergenic	Intergenic	-92579.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	3.67169278752022	3.27575718676952	3.95677572637501	3.79778260449478	3.72984561810658	3.7357304384358	3.80580728519889	3.50042266860543	-0.0059646181987586	0.990718031464767	0.996376480694367
Merged-chr5-88720843-4	chr5	88720727	88720927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026735)	promoter-TSS (NM_026735)	-44.0	NM_026735	68473.0	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	8.39358920939246	8.39913133534733	8.31811464220688	8.5934258636825	8.50694391730753	8.73251015066453	8.55201611044507	8.3406564642438	0.129545638357274	0.430088717719965	0.720740306563559
Merged-chr8-126696599-4	chr8	126696496	126696696	+	988.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103160.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.27900457872277	5.01027247397719	5.30986444898484	5.36406476306763	5.42113123780092	5.07350240790068	5.49881350594076	5.21419964694515	0.119118717822533	0.693524796449546	0.875379512811786
Merged-chr10-75318427-3	chr10	75318329	75318529	+	964.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331095, intron 1 of 2)	intron (NM_001331095, intron 1 of 2)	829.0	NM_001331095	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	3.24588322046337	3.8562668001166	3.49610146484173	2.91261862802853	3.72239260867571	3.5559819671194	3.82579446903534	3.49414916479799	0.72701209102257	0.219974679221748	0.527609241046694
Merged-chr3-122498098-3	chr3	122497979	122498179	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355264, intron 1 of 9)	intron (NM_001355264, intron 1 of 9)	14510.0	NM_001355264	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	3.49282979779094	3.77530756032337	3.43685184534122	3.92679774438476	3.32274767169044	3.14641489366439	3.47979188241855	3.49140825470701	-1.07144398191769	0.0502910998502442	0.232628556144769
Merged-chr10-130231631-4	chr10	130231514	130231714	+	976.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20486.0	NM_146300	258297.0	Mm.377419	NM_146300	ENSMUSG00000045559	Olfr827	MOR210-5	olfactory receptor 827	protein-coding	6.43157469636512	6.12511822692285	6.09486943360164	6.77901122814354	5.57879570685045	5.37348354422168	5.79302611334755	6.02777181744329	-1.07826562809379	0.000246363208821299	0.00430857170532954
Merged-chr3-87521380-4	chr3	87521275	87521475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4203.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	8.07840455665681	8.41408048059438	8.36859164809253	8.25901678372537	7.77189400627489	8.09077562547051	8.09209664332278	8.05470876678133	-0.363242011292123	0.0349727407061043	0.185190054360943
Merged-chr8-72216044-4	chr8	72215906	72216106	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3169.0	NM_001080812	234421.0	Mm.211247	NM_001080812	ENSMUSG00000074240	Cib3	C730014M21Rik|Gm1107|KIP3	calcium and integrin binding family member 3	protein-coding	5.76099894915901	5.88582655171309	5.88232594796799	5.21060767994168	4.78547635509486	4.84764113153435	4.9024705054006	4.8817416020529	-1.5720900467722	3.44512964751142e-06	0.000106340365646234
Merged-chr16-90316060-4	chr16	90315958	90316158	+	854.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-31555.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	4.16759913037703	4.37531137312275	4.06732614759977	4.61510243643016	3.88293979246885	4.47784209089433	4.2429907167521	4.427969952679	-0.166075525447159	0.706048925932862	0.881879743016467
Merged-chr2-31142016-4	chr2	31141922	31142122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177649)	promoter-TSS (NM_001177649)	-14.0	NM_001038700	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	6.0443229069137	6.06898423497196	5.68242325782569	5.48503560123972	5.67654069354676	5.77812765738337	5.8243710666796	5.82691531724234	-0.0891833202384753	0.749662491689225	0.901415182376325
Merged-chr6-115375525-4	chr6	115375409	115375609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 1 of 7)	intron (NM_001308354, intron 1 of 7)	13160.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	5.95151283636601	5.65088198467858	5.9958780143575	6.00280143929144	6.06298393661335	5.86084067069309	5.87764104546843	6.05384367061154	0.0956317732278192	0.700865381902956	0.879374176246616
Merged-chr10-87832274-4	chr10	87832171	87832371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25994.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	7.51085884354628	7.41513029721228	7.72641423783037	7.72760841449092	7.60010569970788	7.81338453848194	7.56500452220272	7.5617900351717	0.0393774981510665	0.82743468869639	0.93381914867164
Merged-chr5-120512069-4	chr5	120511980	120512180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 1 of 13)	intron (NM_001177595, intron 1 of 13)	888.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	6.5192366855039	6.39758161320602	6.65819262988903	6.21273130969077	6.40499887144406	6.57780847337607	6.58013865844408	6.32388512333635	0.0472840945409454	0.83576942650632	0.937518218676227
Merged-chr5-113647929-3	chr5	113647868	113648068	+	943.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	B4|SINE|B4	2422.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	3.59490065034087	3.94300139038481	3.80007877146149	3.47661784300338	3.57159120958363	3.71285863512806	3.5813871208911	3.53686424994467	-0.337483631763544	0.493843695279071	0.764540974536594
Merged-chr6-149126854-2	chr6	149126754	149126954	+	865.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-14659.0	NM_001252096	320204.0	Mm.274099	NM_177101	ENSMUSG00000039958	Etfbkmt	4833442J19Rik|AI256744|ETFB-KMT|Mettl20	electron transfer flavoprotein beta subunit lysine methyltransferase	protein-coding	2.91294731638284	2.64302734910562	2.8469790678258	2.96409605670184	3.07815943438594	3.02224837222624	3.332285956464	3.03505549873291	1.11217258048787	0.0714947170990216	0.287023263868655
Merged-chr19-32112116-4	chr19	32112071	32112271	+	906.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9031.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	3.91869690611406	3.71205791155151	3.83045154007876	3.2576176691053	3.52385979328313	3.57638795466763	3.6167060761907	3.57460728586046	-0.379032831562185	0.469217914039196	0.748190190268508
Merged-chr18-65690823-7	chr18	65690730	65690930	+	994.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7438.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	4.3284318911529	4.15284630208696	4.91951535227746	4.55131212126063	4.35650297411617	4.30883595283704	4.26278673410281	4.88629891508331	-0.089700457944085	0.834451346326793	0.936888323107459
Merged-chr9-41122910-4	chr9	41122797	41122997	+	941.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	MIR3|SINE|MIR	35165.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	4.77528012983247	4.66352063261831	4.84789191450713	4.7308710360719	4.3738364622099	4.8345764412281	4.75333588291184	4.97686376862091	-0.0238152973035139	0.94678710241444	0.980956087221295
Merged-chr2-73160950-3	chr2	73160865	73161065	+	983.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030091, intron 4 of 7)	ORR1D2|LTR|ERVL-MaLR	53482.0	NM_030091	67059.0	Mm.22661	NM_025942	ENSMUSG00000027108	Ola1	2510025G09Rik|2810405J23Rik|2810409H07Rik|Gtpbp9|PTD004	Obg-like ATPase 1	protein-coding	3.80616732993147	4.04641857111565	3.9973656441535	4.28244608915831	3.2320471331134	3.57329110893322	3.68510884389885	3.8044912526826	-1.42803462145357	0.00572290963530109	0.0525004491469385
Merged-chr18-58583279-2	chr18	58583176	58583376	+	567.5	f0_balb.idr|f1_balb.idr	intron (NM_001081072, intron 4 of 9)	intron (NM_001081072, intron 4 of 9)	27036.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	3.14285585444308	3.07573217108701	3.57469930588429	2.81473507473546	3.02919000593564	2.77646656654749	2.94951280875154	2.95818169707346	-0.99319040711281	0.13058460229455	0.402219109728842
Merged-chr4-137818547-4	chr4	137818445	137818645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-22161.0	NM_007431	11647.0	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	6.03407938778786	5.90122163405297	5.96980540646764	6.08956503859033	6.15168626975832	6.00470665939473	6.00437073795426	6.11291243158478	0.105411747710729	0.651886373247247	0.854240218000769
Merged-chr8-11038525-4	chr8	11038420	11038620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-30090.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	6.26808386713352	6.12181351549838	6.23127228083807	6.69277149022327	6.04722674020755	5.89716442298678	6.25551395501924	6.37196320387324	-0.320291957374474	0.220224481682668	0.528003179119194
Merged-chr9-119403135-3	chr9	119403024	119403224	+	818.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007397, intron 1 of 9)	CpG	946.0	NM_001313757	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	3.8390234221037	3.40858992334318	3.92782613853009	3.64872198430017	3.5038228954656	3.76061848391079	3.57366613173934	3.46965529340426	-0.427569733682612	0.39367706095148	0.692796487291156
Merged-chr6-51567824-4	chr6	51567722	51567922	+	776.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 2 of 6)	intron (NM_001361577, intron 2 of 6)	22529.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	3.86682584315581	4.10461526527578	3.725690906135	3.36379393570702	3.73621084157192	3.68538937933866	3.23981080997124	3.17549929601819	-0.948845141670187	0.109103456630723	0.364697799357483
Merged-chr14-32201944-4	chr14	32201836	32202036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016897)	promoter-TSS (NM_016897)	-35.0	NM_001359915	26430.0	Mm.15962	NM_011960	ENSMUSG00000021911	Parg	AI413217	poly (ADP-ribose) glycohydrolase	protein-coding	6.53672941752525	6.47063700180569	5.99969648440798	5.85507389751431	6.63675031144237	6.33485513320498	6.42399281388636	6.69429635051628	0.443838894104838	0.0908888443392894	0.329414789512006
Merged-chr6-56832112-4	chr6	56832001	56832201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012056)	promoter-TSS (NM_012056)	42.0	NM_012056	27055.0	Mm.20943	NM_012056	ENSMUSG00000029781	Fkbp9	1810014L23|AW549641|FKBP-63|FKBP-9|FKBP60|FKBP63|FKBP65RS	FK506 binding protein 9	protein-coding	6.00449524422745	6.22544718684607	6.18407857398186	6.17712025924617	5.68132887147065	5.78722660106434	5.93173420718996	5.66120839162363	-0.618977663586553	0.010978129088627	0.0843707479934739
Merged-chr9-113729161-4	chr9	113729050	113729250	+	835.891663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12323.0	NM_001286599	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	4.13938464533618	4.23486812642582	4.13997134439093	4.38505740774973	4.76229731607142	4.36792574336752	4.59276723925174	4.57530647796771	0.795088237614004	0.0384534117166685	0.196727908616456
Merged-chr1-88584801-2	chr1	88584701	88584901	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33284.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	2.81491265559885	2.65655639795055	2.69553213008412	2.31419318110906	2.58212524627935	2.59807695585096	2.80354985079607	2.5625292502344	0.0633683148589416	0.928406871628037	0.97398704037867
Merged-chr5-3212952-3	chr5	3212859	3213059	+	641.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130934.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	3.71255553408827	3.25593962028271	3.38334798683562	3.55613592998696	2.90008652766166	3.12269008715789	3.13693502403076	3.20895723413727	-1.55549707288068	0.00833813001273439	0.0691211107044746
Merged-chr9-54467726-4	chr9	54467636	54467836	+	933.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172771, intron 6 of 43)	L2a|LINE|L2	33890.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	4.86084043968693	5.22424949383168	4.6391002618862	4.76900963722075	4.66577322750532	4.55038147911247	4.57684346375999	4.36740693713586	-0.725026370039075	0.0493127937056541	0.229734419370164
Merged-chr4-126083990-3	chr4	126083843	126084043	+	929.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172701, intron 6 of 9)	ID_B1|SINE|B4	-12710.0	NM_001163266	116748.0	Mm.41865	NM_138721	ENSMUSG00000050188	Lsm10	-	U7 snRNP-specific Sm-like protein LSM10	protein-coding	3.17378616291022	3.13712799018457	3.10332135240589	3.02939302057509	3.75134396349527	3.7082120216073	3.84144184564237	3.585533089581	2.16172834081758	2.33237496420247e-05	0.000583741622985117
Merged-chr11-3663606-4	chr11	3663495	3663695	+	719.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159288, intron 4 of 26)	MERVL_2A-int|LTR|ERVL	4895.0	NM_198162	74522.0	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	3.75972325045282	3.61705143302185	3.41260534314203	3.75386515094149	3.78831155643623	3.59314794037793	3.97377560254732	3.98958015787758	0.574431705685065	0.230651345950151	0.540191550156043
Merged-chr14-78734450-2	chr14	78734350	78734550	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1721.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	2.81078708852109	3.06290946502863	2.88108479313047	2.70684365611392	3.32681313927059	3.05760358967671	3.27395792292501	3.06997977915439	1.3652284692144	0.0213024295349609	0.133510029935057
Merged-chr1-112451758-3	chr1	112451657	112451857	+	770.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-586839.0	NM_001081316	319901.0	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	3.44259933217937	3.34880281338075	3.22996235495314	3.45776917435975	2.95196699097462	3.08310991597352	3.15945067864705	3.16905618525908	-1.13935988777978	0.0440009049997205	0.213828116131297
Merged-chr1-184589507-1	chr1	184589407	184589607	+	647.0	f0_balb.idr	Intergenic	Intergenic	-31816.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	3.37801982229149	3.35114579720713	3.26165102565208	3.3647502585536	3.07157638090864	3.54859795671613	3.30893791344826	3.533838108502	0.111666219155805	0.836273815883473	0.937707063206507
Merged-chr16-36530795-4	chr16	36530673	36530873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013803, intron 1 of 6)	intron (NM_013803, intron 1 of 6)	31361.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	6.36080193556301	6.36361095262508	6.46596789693253	6.63888747578581	6.07577814145141	6.16511656129467	6.70010868799193	6.39299611028985	-0.17871185526182	0.467596556386157	0.747026558181345
Merged-chr7-100952867-4	chr7	100952786	100952986	+	861.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	11480.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	4.3759816354196	4.27481008795175	4.54617935026797	5.06235118715505	4.10097838937756	4.14156989066287	4.86660094941306	4.41836509583847	-0.442898196696679	0.333377474299305	0.644131513179354
Merged-chr3-18245378-4	chr3	18245258	18245458	+	910.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-2020.0	NM_007825	13123.0	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding	4.78930407991396	4.63880341267706	4.22777132276357	4.386783987715	4.70744163457898	4.88965444579674	4.80116748701574	4.67724638712273	0.535427474209828	0.139504422998141	0.415298424282087
Merged-chr11-75166685-2	chr11	75166585	75166785	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001098203, exon 2 of 2)	exon (NM_001098203, exon 2 of 2)	1467.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	2.97780042663651	2.82219274002295	3.27751727170359	2.56890148295498	3.01298583953169	3.09207801778342	3.26304339592498	3.51808519914214	1.19876615251421	0.0666435938254079	0.27520446816741
Merged-chr3-116290318-4	chr3	116290209	116290409	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173553, intron 13 of 13)	intron (NM_001173553, intron 13 of 13)	-36825.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	5.114957701725	4.88460465010783	5.56588042155731	5.63202485852694	5.18181078994642	4.66617217442815	5.09081121553854	5.43792952576424	-0.40204796871968	0.272284247161947	0.583779019836542
Merged-chr10-13301236-4	chr10	13301143	13301343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	23046.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	7.56092027721662	7.96311543274899	7.50822992715206	7.59184211883141	7.66377139263095	7.63882349703489	7.20678101696125	6.79352724073525	-0.386502593833667	0.109640871741615	0.365647920939134
Merged-chr5-36462975-4	chr5	36462846	36463046	+	920.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126490, intron 1 of 1)	intron (NR_126490, intron 1 of 1)	1908.0	NR_126490	76710.0	Mm.165495	NR_126488	ENSMUSG00000039563	2210406O10Rik	-	RIKEN cDNA 2210406O10 gene	ncRNA	4.30457470023369	4.26783024614449	4.12541688880893	4.08041614346829	4.23919831434313	4.20032500750112	4.05964204224313	4.42148482981251	0.118714086980291	0.766052666257317	0.908502102755726
Merged-chr2-120027502-4	chr2	120027377	120027577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114637)	promoter-TSS (NM_001114637)	-6.0	NR_104353	102238433.0	Mm.41467	NR_104353	ENSMUSG00000033852	Gm28042	Jmjd7-pla2g4b	predicted gene, 28042	ncRNA	6.68453272266779	6.63641665814586	6.75758558538256	6.74516587180364	6.58507378827392	6.7214604087718	6.73702257101793	6.20083898144637	-0.187671815676678	0.39196850384645	0.691653679787953
Merged-chr8-26979676-2	chr8	26979576	26979776	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001101502, exon 2 of 2)	exon (NM_001101502, exon 2 of 2)	2340.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	3.91149409616171	3.56841803955823	3.80955871273968	3.5960314132514	4.17194131389194	3.81858720754936	3.98916005663661	4.21440096410649	0.970944222775491	0.030270168137257	0.168247459980544
Merged-chr3-69606667-4	chr3	69606553	69606753	+	909.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7693.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	4.96568329236959	4.68156609887569	4.68653655257738	5.19281691097085	4.55007424562187	4.45831164243197	4.5426762211995	4.68347754416652	-0.754811511004107	0.0384465145948926	0.196727908616456
Merged-chr11-51585792-2	chr11	51585692	51585892	+	848.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028398, intron 2 of 12)	intron (NM_028398, intron 2 of 12)	1035.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	2.99251111155878	3.10554043026978	2.99285494014474	2.83292424283043	3.34081977818556	3.16581691326418	3.04472527249141	3.17090032628936	0.864043573112942	0.128754515790428	0.399260158553928
Merged-chr15-84680983-3	chr15	84680904	84681104	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146061)	promoter-TSS (NM_146061)	6.0	NM_146061	109270.0	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding	5.31784740929318	5.41889869718562	5.18180008261048	5.26385467440964	4.16778083604928	4.38049893950816	4.86608389891981	4.5098516767987	-1.66119293578426	5.60722228419166e-06	0.000164177900027346
Merged-chr11-9118690-2	chr11	9118590	9118790	+	709.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159402, intron 1 of 8)	intron (NM_001159402, intron 1 of 8)	183.0	NM_001159402	22271.0	Mm.4610	NM_009477	ENSMUSG00000020407	Upp1	AI325217|UPase|UdRPase|Up|Upp	uridine phosphorylase 1	protein-coding	2.87637204120217	2.770780648734	2.76102666093982	2.66296454349064	2.64755882241111	2.59386258456741	2.80959934930365	2.56370771986591	-0.536984431193183	0.412899066591845	0.707875069079333
Merged-chr1-118448407-3	chr1	118448304	118448504	+	745.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 2 of 39)	intron (NM_001359330, intron 2 of 39)	10861.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	3.60468934896485	3.07545590984734	2.96609291317079	3.3088152510397	3.43259472694328	3.40907956710456	3.39353871807174	3.35085987047251	0.474879221627673	0.402662467771253	0.700127312540977
Merged-chr10-128459111-4	chr10	128459110	128459310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114096)	promoter-TSS (NM_001114096)	-26.0	NM_001114096	68094.0	Mm.417338	NM_198160	ENSMUSG00000025369	Smarcc2	5930405J04Rik	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	protein-coding	5.42444494292882	5.94203207191364	5.06254566878082	5.38195679282915	5.95830868569701	6.2163089638317	6.12312146529847	5.80304056492121	0.876685937770365	0.00376516557554632	0.0381821798691853
Merged-chr5-99334208-4	chr5	99334095	99334295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-81268.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.76394162512533	5.69911206468564	5.34332048244649	5.60494070550255	6.07541785845747	6.17630208238427	5.55708798668237	5.33964033901065	0.371839036538885	0.229713007615031	0.538813547740569
Merged-chr3-59210135-4	chr3	59210043	59210243	+	909.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028808, exon 2 of 2)	exon (NM_028808, exon 2 of 2)	739.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	4.29430721216076	4.79391379313084	4.04332481381478	3.83265429909493	4.23805782646851	4.75155300909945	4.3632549434002	4.38072238581277	0.356300530409386	0.43972634324439	0.727425871224001
Merged-chr2-66142429-4	chr2	66142269	66142469	+	955.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17576.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	4.39189151113122	4.42420018983426	5.26560385171119	4.99756914607501	4.62637069747711	4.52477312801329	4.75628600852283	5.01218677231203	-0.177238733734947	0.664882923898861	0.861124888827778
Merged-chr15-96770585-1	chr15	96770485	96770685	+	679.0	f0_balb.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-70857.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	3.50389487650903	3.13759866285734	3.40861536018076	3.26132339519099	3.38469471381302	3.03074434333259	3.2352591823859	3.06169738010172	-0.513702954754752	0.371069504716364	0.675145223184634
Merged-chr1-9547991-4	chr1	9547880	9548080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175236)	promoter-TSS (NM_175236)	32.0	NM_001357376	76187.0	Mm.28514	NM_175236	ENSMUSG00000025911	Adhfe1	6330565B14Rik|AI043035|Adh8|HOT	alcohol dehydrogenase, iron containing, 1	protein-coding	7.52053617115373	7.64756754011641	7.43863898675889	7.28385069505356	7.65711253906497	7.65339468729635	7.30265612603154	6.71989042796465	-0.114061645997009	0.637766658587355	0.846948506345069
Merged-chr14-45075042-4	chr14	45074956	45075156	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86945.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	5.08636189032195	4.43604679643749	5.15000108548389	5.31597216874011	4.88187133768086	5.16092418104066	4.81654611016154	5.20614397364765	-0.0465510429611286	0.900119770809263	0.963004090821309
Merged-chr10-88417851-4	chr10	88417747	88417947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 5 of 20)	intron (NM_001004164, intron 5 of 20)	38435.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	6.54149027451109	6.0868549895442	6.66436768131395	6.68694719027898	6.34439283728528	6.39385830833371	6.70049504826458	6.40323265232529	-0.0826423664158605	0.734027974706772	0.894723473099637
Merged-chr19-55561998-3	chr19	55561902	55562102	+	704.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	140202.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	3.36869079780419	3.42835765422047	3.47479226394809	3.39920798640289	3.36389357778826	3.0201278407997	3.35614155133519	3.31112594892415	-0.510539447193796	0.343791659148268	0.652384432892204
Merged-chr2-148572935-4	chr2	148572842	148573042	+	947.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99673.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	4.40844661129716	4.86086237441575	4.36026939216852	4.5257407412203	4.88424590863007	4.63395530700118	4.92554935663153	4.9147953111869	0.611173382587913	0.0871367142645394	0.3219368685991
Merged-chr7-30090498-4	chr7	30090391	30090591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152814)	promoter-TSS (NM_152814)	19.0	NM_152814	72556.0	Mm.441512	NM_152814	ENSMUSG00000078768	Zfp566	2700043M03Rik|mszf4	zinc finger protein 566	protein-coding	8.25837698484262	7.93078607017233	7.82948923556277	8.00182072482813	8.29311548873708	8.26339215429524	8.25389730895882	8.05437571442313	0.265592998272117	0.120973739097067	0.385163676211649
Merged-chr8-78820107-4	chr8	78820016	78820216	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001191004, intron 1 of 4)	MIR3|SINE|MIR	1036.0	NM_001191004	78651.0	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	5.17340659316845	4.75879588730616	5.01554707093329	4.69438964310229	5.12278192955112	5.01031769397147	4.99115502130292	5.20013922416845	0.35257183956422	0.280130513511903	0.592218652804175
Merged-chr19-32906249-4	chr19	32906140	32906340	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	148663.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	6.2868042258408	5.5326977869678	5.65797249465855	6.11008085667427	5.71524672039482	5.3686085386726	5.82333359695033	5.42346932481226	-0.552263628106441	0.0723310777403618	0.288979219941694
Merged-chr6-125231289-3	chr6	125231196	125231396	+	831.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015604)	promoter-TSS (NR_015604)	20.0	NR_015604	78668.0	Mm.10626	NR_015604	ENSMUSG00000030337	E130112N10Rik	5830448L21Rik|9530059J11Rik	RIKEN cDNA E130112N10 gene	ncRNA	3.58336148929558	3.88432499924915	3.69473929204396	3.43553128217825	3.80115188168845	3.86648780987021	3.82831258920922	3.63847157919193	0.412203015966798	0.385235654230494	0.686684579597124
Merged-chr7-113722189-4	chr7	113722097	113722297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-43801.0	NM_145584	233744.0	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	6.24060261284295	6.23697658221053	6.35186548756313	6.42810013895264	6.08751762882492	6.16504746412325	6.37074742167329	6.23724755520305	-0.168002835021844	0.456881968188891	0.740193504352272
Merged-chr11-117949822-4	chr11	117949664	117949864	+	875.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	19602.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	4.06965460735972	4.56585850826887	3.91465660491691	3.85917595429848	4.09843243830492	4.24398535903557	4.10029890483897	4.16196523287186	0.0519054147051572	0.907511776361004	0.96572638861679
Merged-chr9-35210427-4	chr9	35210325	35210525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026130)	promoter-TSS (NM_026130)	630.0	NM_172291	235169.0	Mm.138512	NM_172291	ENSMUSG00000039048	Foxred1	BC024806|TEG-23|Tex23	FAD-dependent oxidoreductase domain containing 1	protein-coding	6.09784362406293	5.9421944840563	6.03490783890651	6.32429392945118	5.96766789485734	6.41035382736451	6.16732724951065	6.23246122360003	0.110914708368505	0.655426221254832	0.856076057726398
Merged-chr12-69485823-4	chr12	69485730	69485930	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10280.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	4.60209963685887	4.40449472811532	4.67924454288732	4.22149356081498	4.80830945450529	4.56568281123653	4.69316083347073	4.59983624691717	0.459610217851551	0.2116243744056	0.516340840702575
Merged-chr4-47247020-3	chr4	47246936	47247136	+	847.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 3 of 39)	intron (NM_009928, intron 3 of 39)	39024.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	3.78274973265744	3.85690274080871	4.02372004911159	3.83580645914948	3.77784919657771	4.10177931605801	3.60116304893994	3.7811473530586	-0.145476408351953	0.750512558757735	0.901823997485197
Merged-chr1-185362925-4	chr1	185362776	185362976	+	987.6785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029735)	promoter-TSS (NM_029735)	-168.0	NM_029735	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	7.81871107975274	8.00437878052177	7.70667107204269	7.62026612780908	7.94798528982168	8.08715334060413	8.15327311159698	8.15760267490827	0.382366777762262	0.0275654363805515	0.158398336653853
Merged-chr19-40345844-2	chr19	40345755	40345955	+	766.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034963, intron 11 of 22)	intron (NM_001034963, intron 11 of 22)	56455.0	NM_001034964	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	3.24545954447828	3.07429351102969	3.19073864322874	3.60751848105073	2.73003104474557	3.24522125237986	2.93399714950584	2.79882962188662	-1.5329374280074	0.0210156548110219	0.132406582852884
Merged-chr11-115708661-4	chr11	115708555	115708755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008163)	promoter-TSS (NM_008163)	-58.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	7.61049004992151	8.03154892510945	7.7494947573565	7.54308095130026	8.13846020880685	8.12973706298081	8.11169510567206	7.94685863734984	0.442393782237245	0.0151994962082257	0.105855829425918
Merged-chr13-63431726-4	chr13	63431614	63431814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042673)	promoter-TSS (NM_001042673)	31.0	NM_001347515	14088.0	Mm.126106	NM_007985	ENSMUSG00000021461	Fancc	Facc	Fanconi anemia, complementation group C	protein-coding	6.75025294914801	7.45130017073813	7.19308505292558	6.7165478405124	7.22088568772396	7.31385911768199	7.17861731644924	6.97369628073708	0.161774480628484	0.494566693628413	0.765224301099017
Merged-chr6-17636959-4	chr6	17636853	17637053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007604)	promoter-TSS (NM_007604)	-57.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	8.40735875800823	8.36511252143571	8.26038381527802	8.15316238859648	8.40927244988617	8.64726307817511	8.63816922070911	8.09992256959666	0.214752191784685	0.235571457528475	0.545557842336431
Merged-chr10-34022027-2	chr10	34021927	34022127	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	-2411.0	NM_025614	66521.0	Mm.28528	NM_025614	ENSMUSG00000019782	Rwdd1	0710001K08Rik|2610002D06Rik|2700069A07Rik|IH1	RWD domain containing 1	protein-coding	3.28098093188192	3.37094553527313	3.55805354309953	3.18171858311567	3.19833988316309	3.67613952168171	3.2695946752001	3.50518977730992	0.253614500871489	0.639664693524453	0.847634612685043
Merged-chr16-23224819-4	chr16	23224718	23224918	+	923.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145933)	promoter-TSS (NM_145933)	78.0	NM_145933	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	4.70761209040016	4.50304528425387	4.66964160321191	4.84013470003534	4.46781637552682	4.38671867298401	4.79468844308155	5.14965873151814	0.084250771580905	0.827101893057193	0.933672322391225
Merged-chr8-13600954-4	chr8	13600831	13601031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 4 of 23)	intron (NM_009025, intron 4 of 23)	-38470.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	5.31779274232139	5.68446904741586	4.87747853376214	4.92124148594095	4.98552023166321	5.74802796741039	5.04057956611287	4.74733061538789	-0.10462516909873	0.792056870339053	0.919484287594563
Merged-chr8-122431732-4	chr8	122431636	122431836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301284, intron 1 of 4)	intron (NM_001301284, intron 1 of 4)	1204.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	5.53907951041706	5.67115946633383	5.3740500705711	5.17264037229615	5.54020948158624	5.14038224573515	5.43239384878457	5.39950833825545	-0.0797952175244951	0.791262590434607	0.919050824109746
Merged-chr10-70097038-4	chr10	70096920	70097120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111121)	promoter-TSS (NM_001111121)	-101.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	6.90039840142076	7.07149053651384	6.95321131102564	7.00330797747166	6.74368740866687	6.58725959352722	6.95524534602515	6.82911177790545	-0.28085995605445	0.156029867045763	0.441926302433264
Merged-chr10-85353067-3	chr10	85352952	85353152	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Zaphod|DNA|hAT-Tip100	-33762.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	3.77057567381949	3.61280754287724	3.77114806172801	2.43743072606176	6.31845648748171	5.9093682593661	6.52715436012524	6.3490066802714	9.97678183753004	3.21665819800232e-27	2.72569659375723e-24
Merged-chr16-13672531-6	chr16	13672420	13672620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177552, intron 1 of 5)	intron (NM_001177552, intron 1 of 5)	662.0	NM_025653	67118.0	Mm.223689	NM_025653	ENSMUSG00000022684	Bfar	3010001A07Rik|3110001I22Rik|AI666707|AW107665|Bar|Rnf47	bifunctional apoptosis regulator	protein-coding	6.41090564278955	6.65434325201583	6.80569583507264	6.60881361474036	6.80826147471651	6.92610752180021	6.41552374746774	6.61166452458086	0.114589759024824	0.60751087789445	0.830012990472744
Merged-chr19-47512070-4	chr19	47511958	47512158	+	903.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045322)	promoter-TSS (NR_045322)	-924.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	5.08912980914996	4.77155266308611	4.80155874245416	5.12293720939642	4.5291278959332	4.60769912600642	4.14726411166498	4.72424570485415	-0.945293049401252	0.0110844757162475	0.0849189427410158
Merged-chr13-52283630-4	chr13	52283494	52283694	+	822.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	186853.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	3.36062180466939	3.63464575429776	3.29595297987076	3.50088755130481	3.60475957090286	3.53823098405662	3.86044295548289	3.78813033271613	0.765734369757932	0.123919522640928	0.390666338995867
Merged-chr18-75378778-2	chr18	75378678	75378878	+	684.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042660, intron 3 of 3)	intron (NM_001042660, intron 3 of 3)	11413.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	3.00531999665905	3.09107319752813	3.06422168470259	2.68997228836525	2.60662461826433	3.05561948670672	2.93373168632268	3.06248156147794	-0.188233553291481	0.772570058727577	0.910940763350478
Merged-chr19-40612351-4	chr19	40612250	40612450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026260)	promoter-TSS (NM_026260)	-16.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	8.23457805667413	8.36951835908982	8.06509315629768	8.08574553388496	7.99309336889247	8.15468566749893	8.13287724070912	7.80709891825374	-0.21153335753822	0.219918581231421	0.527559848087391
Merged-chr2-153299154-4	chr2	153299076	153299276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008444, intron 1 of 8)	MIRb|SINE|MIR	7760.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	7.15844674822335	6.75122039217845	7.29339203853428	7.24539411637529	6.89815749306205	6.71407250485649	6.91029128826537	6.90090985096862	-0.376671303759555	0.0747873713406794	0.294950764978833
Merged-chr11-118474068-4	chr11	118473967	118474167	+	966.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII|LTR|ERVK	-2765.0	NM_172573	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	4.85361509505734	4.79844106733016	4.47077541010698	4.66733379448389	5.31158044599456	4.91491973874504	5.1804379285138	4.92288265935616	0.795964564246983	0.017067578084532	0.114897848873525
Merged-chr7-4151806-2	chr7	4151706	4151906	+	852.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021454, intron 2 of 2)	intron (NM_021454, intron 2 of 2)	-1934.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	3.09416483568686	2.64701707702208	2.71757688073931	2.67905674024395	2.96444357717799	3.09184975924355	2.96904273158105	3.09278500570265	1.04951462635371	0.0911161900827734	0.329818922594677
Merged-chr4-11254232-4	chr4	11254137	11254337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178112)	promoter-TSS (NM_178112)	22.0	NM_178112	72656.0	Mm.246713	NM_178112	ENSMUSG00000040738	Ints8	2810013E07Rik|AV063769|D130008D20Rik	integrator complex subunit 8	protein-coding	7.76411633441286	7.81289181477986	7.90714713102247	8.03479681226526	7.67370062318842	7.76489810037812	7.88305872187572	7.60968993291333	-0.203740287257543	0.235827530943492	0.545860161228986
Merged-chr9-37257753-4	chr9	37257652	37257852	+	939.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2014.0	NM_001145960	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	5.23730523250321	4.94207579100925	4.72692759840567	5.32671685655379	4.66816281347812	4.27331060974004	4.53849787119796	4.6426917584645	-1.12862187025079	0.00244458089253388	0.027307411071825
Merged-chr3-108719542-3	chr3	108719431	108719631	+	667.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029522, intron 1 of 14)	intron (NM_029522, intron 1 of 14)	2768.0	NM_029522	76123.0	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	3.49684027770917	3.70650198665318	3.9535507906875	3.4967746458232	3.52716300068616	3.67409004692808	3.75433762591433	3.81645519171968	0.0776535599173315	0.873758785512979	0.952715634099699
Merged-chr5-113225287-3	chr5	113225190	113225390	+	999.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1619.0	NM_001033428	333048.0	Mm.332586	NM_001033428	ENSMUSG00000066964	Tmem211	Gm854	transmembrane protein 211	protein-coding	4.6201609455248	4.39979241666369	4.71301369768829	4.38093542893546	3.29779631366159	3.73398235471443	3.59579320560722	3.67357340876907	-2.90587925177125	2.98202450537694e-08	1.43805909395816e-06
Merged-chr18-39345700-2	chr18	39345600	39345800	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 20 of 21)	intron (NM_001361073, intron 20 of 21)	141545.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	3.44644414457476	3.39286612727631	3.28781001211394	2.95510414027647	3.09616430977655	3.40228642389736	3.15826651246667	3.10489454956856	-0.311478473904491	0.591536443931195	0.821652127405771
Merged-chr6-134792685-4	chr6	134792561	134792761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001048054)	promoter-TSS (NM_001048054)	-33.0	NM_001048054	70686.0	Mm.491182	NM_130447	ENSMUSG00000030203	Dusp16	3830417M17Rik|AW558566|D6Ertd213e|MKP-7|MKP7|Mkpm	dual specificity phosphatase 16	protein-coding	7.23632635182435	7.61612531541009	6.88573018900296	7.00810586291734	7.94357936506598	7.78623066953387	7.72966087591053	7.56071599528102	0.729766843786117	0.000855319101539909	0.0118699080383133
Merged-chr7-66109385-4	chr7	66109291	66109491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081163)	promoter-TSS (NM_001081163)	-124.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	6.0809666973792	6.52025296605125	6.12574502646433	6.14753607407923	6.60071910648997	6.53592814654397	6.36282116578353	6.33787961313153	0.354877709337419	0.128496812246126	0.398860695079455
Merged-chr1-156450720-4	chr1	156450582	156450782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 3 of 15)	intron (NM_009230, intron 3 of 15)	23646.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	7.01681707552114	7.26825312567907	7.14896351196885	7.2155248101793	5.97564916786261	6.17688683535944	6.19609131991108	6.20209091649286	-1.50333516045562	8.3676278628574e-13	9.05166236550649e-11
Merged-chr18-38845754-2	chr18	38845654	38845854	+	974.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010197, intron 3 of 3)	intron (NM_010197, intron 3 of 3)	-46702.0	NM_001033789	545253.0	Mm.244585	NM_001033789	ENSMUSG00000036452	Gm5820	EG545253	predicted gene 5820	protein-coding	3.53608770568241	3.48776849538779	3.18490237824271	3.22333173728238	3.50392201200443	3.65345804874645	3.30105346947758	3.4822132574353	0.444315165975832	0.394977958746634	0.693987710143582
Merged-chr9-22165021-4	chr9	22164902	22165102	+	941.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	8156.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	4.6458217878195	5.02165076600583	5.23892520974856	5.1687706592434	4.78310865637185	4.68916999239393	4.93571280455383	5.14900175084764	-0.289665676180247	0.402540417008733	0.700017696666698
Merged-chr11-4236520-4	chr11	4236481	4236681	+	765.5625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013365)	promoter-TSS (NM_001013365)	-204.0	NM_001013365	18413.0	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	2.88561449173187	2.62018450985663	2.83283638230416	2.55474955470521	2.3883583801366	2.48516439388119	2.51903413807869	2.3807002552687	-1.59070229696954	0.0313287740547989	0.17235345127651
Merged-chr6-142387131-4	chr6	142387028	142387228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204907)	promoter-TSS (NM_001204907)	-41.0	NM_023042	19691.0	Mm.27407	NM_023042	ENSMUSG00000030243	Recql	RecQ1	RecQ protein-like	protein-coding	8.29628199955831	8.33620995727498	8.38597359641631	8.66326792662055	8.46928843964676	8.53114484124773	8.54381253904032	8.47314701939437	0.0832200640288748	0.606708264596288	0.829593003785543
Merged-chr8-4493422-4	chr8	4493318	4493518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026058)	promoter-TSS (NM_026058)	13.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	6.73779849246518	6.71506509037946	6.70978727821328	7.01287317499494	6.58474553728364	6.47242223661549	6.814633016955	6.62895158609366	-0.26122896541575	0.221445218874894	0.529467559096274
Merged-chr18-38628952-2	chr18	38628852	38629052	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27684.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	3.49298575227218	3.31266538310444	3.32929987616002	3.24045246905525	3.46390021655708	3.44326190407244	3.62232340071363	2.99911940039983	0.214677162266506	0.698826137171316	0.878505428649175
Merged-chr4-89458786-4	chr4	89458667	89458867	+	958.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132431, intron 7 of 9)	intron (NR_132431, intron 7 of 9)	-147735.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	4.81561892921933	4.76799917004564	4.9598441703788	5.51141413000991	4.77209083527754	4.50064356684309	4.96889444976147	4.81322074017038	-0.592341152964579	0.119375660402135	0.382336219031837
Merged-chr9-98956839-2	chr9	98956739	98956939	+	802.833313	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_012020, exon 1 of 1)	3' UTR (NM_012020, exon 1 of 1)	1232.0	NM_012020	26927.0	Mm.151239	NM_012020	ENSMUSG00000050397	Foxl2	AU045128|BPES|PINTO|Pfrk	forkhead box L2	protein-coding	3.21459829291004	2.82275444278437	3.27015123801275	3.16669247776789	2.91990886590558	3.32818421957383	3.2022986138843	3.15579077519426	0.101274982461936	0.864780735600108	0.949269846298694
Merged-chr5-29947037-4	chr5	29946906	29947106	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66108.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	4.58378138177918	4.24176379378349	4.5845332219089	4.61149324654125	4.37052544508785	4.46890322872359	4.18089065910277	4.24498302597375	-0.458372436785023	0.233679120785236	0.543405144503642
Merged-chr18-89149306-4	chr18	89149205	89149405	+	838.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48122.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	3.72128623357193	3.38062847641638	4.07855102831255	3.57378777170337	3.94056435827533	3.55184657467132	3.89496696690974	3.29960145212124	-0.0215972507595032	0.968827885625595	0.988804291176557
Merged-chr11-5511551-4	chr11	5511452	5511652	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9089.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	5.58439194114044	5.34821289233356	5.86901534380841	6.26023747225955	5.48884527932539	5.29159831353314	5.32683660436043	5.38103489209469	-0.767827105481103	0.0171203821383811	0.115137157995826
Merged-chr6-28423534-4	chr6	28423433	28423633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007480)	promoter-TSS (NM_007480)	-71.0	NM_007480	11844.0	Mm.389075	NM_007480	ENSMUSG00000020440	Arf5	-	ADP-ribosylation factor 5	protein-coding	7.01335754807747	7.32733307028372	6.90748968906319	6.97992880740642	7.32373225206722	7.24217683004094	7.64645063153975	7.00963224428464	0.35378326276905	0.102623376031354	0.351907938439718
Merged-chr13-119378570-2	chr13	119378470	119378670	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008710, intron 7 of 16)	intron (NM_008710, intron 7 of 16)	30441.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	3.29082850582425	3.24383685062562	3.46922833427128	3.37878841035599	3.71340377146057	3.52708970481548	3.56077370630558	3.62353320290219	0.870612629144063	0.078008416138241	0.30203225915491
Merged-chr12-79864380-4	chr12	79864283	79864483	+	991.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60350.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	5.22061521219219	5.50389257335581	5.45373553578617	5.62384976997214	5.20154547152382	5.19228860112666	5.02718149744735	5.01113848301569	-0.651634766650449	0.0289313316796207	0.163410828251367
Merged-chr3-85542977-2	chr3	85542877	85543077	+	812.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-31152.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	3.45320770857904	3.22499674487047	3.22856007084015	3.20557111198788	3.62375253985458	2.98983735805187	3.71256193777887	3.02913054535723	0.367221396078485	0.548887588822777	0.797722755733756
Merged-chr13-115900416-4	chr13	115900243	115900443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	409345.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	6.21298909258166	6.18212175404251	6.30197940366071	6.02007494450882	6.04461345965749	5.67923243344458	5.77969179838155	5.67298059913755	-0.562245383574593	0.0272341979060736	0.157218408171647
Merged-chr19-40647693-4	chr19	40647571	40647771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	T-rich|Low_complexity|Low_complexity	-12099.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	6.11464310593889	6.17842214017776	6.13605782738111	6.27518194964972	6.18630502300045	6.1625938038962	6.1047185732105	5.93584851940625	-0.125419466639359	0.585516545162903	0.818172766912737
Merged-chr6-91693664-4	chr6	91693566	91693766	+	942.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 1 of 14)	intron (NM_009320, intron 1 of 14)	9599.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	5.12151917456085	5.31003710120013	4.61985953444408	5.31791371971014	5.20251420284151	5.09015090871236	5.15917797485174	4.79290582593578	-0.113320144260054	0.743550467046376	0.898960594151983
Merged-chr18-56432045-4	chr18	56431966	56432166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026240)	promoter-TSS (NM_026240)	-66.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	7.22388230476494	6.98756370270808	7.15998709803034	7.21926056868165	6.67853008286044	6.77089399125247	7.27053997302818	7.17704525035896	-0.218641337810635	0.31843994127872	0.63033847433642
Merged-chr5-92370583-4	chr5	92370494	92370694	+	935.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-7298.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	4.71874444786981	5.49192921651341	4.67772838561438	4.26813931008996	5.13516352574366	5.42188313422833	4.56886882435159	4.58703218522114	0.207637764524325	0.648806465810207	0.852432727220627
Merged-chr4-119845828-2	chr4	119845728	119845928	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	ORR1D2|LTR|ERVL-MaLR	31150.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	3.48834207663417	3.1501131841263	3.3759212954585	3.23704408447481	3.36238541529499	3.36686070301281	3.57706050722176	3.85847861520458	0.818247012623443	0.122323508853571	0.387557421734546
Merged-chr1-9907256-4	chr1	9907162	9907362	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1376.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	4.59873204626387	4.85902320990462	4.25697472123541	4.88643311802424	4.79766784050203	4.7333703760261	5.06868679808254	5.09062390951366	0.487165784596388	0.19093299581651	0.490311892807621
Merged-chr13-101908605-2	chr13	101908505	101908705	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-140388.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	2.87008066812761	2.66105439303872	2.6576520695955	2.85307974164619	3.010058183554	3.37980108028579	2.92381763657704	3.05229322291761	1.39713564192426	0.0273737981351514	0.157717304311311
Merged-chr2-119898489-4	chr2	119898390	119898590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013720, intron 1 of 23)	intron (NM_013720, intron 1 of 23)	1262.0	NM_013720	29808.0	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	6.46464458480959	6.30424028538129	5.67768794717392	5.87345835638635	6.41859574367238	6.84984840283084	6.43254060059502	6.35935414939187	0.62187549710069	0.0234702448738567	0.14222222349645
Merged-chr11-20732496-3	chr11	20732396	20732596	+	975.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181411, intron 1 of 8)	L1MD2|LINE|L1	9060.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	4.88149594730755	4.57062094533252	4.44726194620131	4.70908589885444	3.92025336270673	3.90837746967764	4.16288162218024	3.84598297271143	-1.76198525324755	3.12346503292206e-05	0.000752114741469415
Merged-chr9-85389190-4	chr9	85389099	85389299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62049.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	6.57139199563182	7.01721936861397	6.57255291245324	6.4001935272134	7.0212309278059	6.84481205650874	6.9671779251301	6.37153418481672	0.246670355963911	0.32444532895171	0.636049743016795
Merged-chr18-64954227-4	chr18	64954129	64954329	+	869.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	66473.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	4.1207978236844	3.86148576184784	3.89765807724121	3.8543739776592	4.64963229923361	4.76284862823575	4.60513084224297	4.58963530037762	1.74433872836664	4.95638873264426e-06	0.000146996164000369
Merged-chr18-60789467-4	chr18	60789348	60789548	+	990.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14401.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	5.04520525894432	4.73436935719713	5.38465181133983	5.12502663137187	6.43266303673486	6.03379749646016	6.53044485342541	6.61171579611935	2.1571326632688	1.07809946577662e-13	1.40288924816297e-11
Merged-chr1-178144925-1	chr1	178144825	178145025	+	616.0	f0_balb.idr	intron (NR_155538, intron 17 of 21)	intron (NR_155538, intron 17 of 21)	-42492.0	NM_024282	78825.0	Mm.440132	NM_024282	ENSMUSG00000026502	Desi2	5830417C01Rik|DeSI-2|Fam152a|Pppde1	desumoylating isopeptidase 2	protein-coding	3.47553642781709	3.47042461731075	3.52664545300247	3.29261044741872	2.97984202121778	3.36445944602669	3.17739446631005	3.42139123282046	-0.728650707724582	0.191390959818846	0.490820440697854
Merged-chr7-123369563-2	chr7	123369463	123369663	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	CpG	352.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	5.64155512326237	5.68497276721945	5.16420023320999	5.21049121907773	5.79629299556261	5.8402842167925	5.42749981146022	5.42179260533475	0.346526136703079	0.255598031247317	0.567190805155031
Merged-chr18-20713615-4	chr18	20713503	20713703	+	997.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 3 of 8)	intron (NM_019737, intron 3 of 8)	32801.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	5.54681936037247	5.71866101595799	5.5749754453242	5.86958715070503	5.63003369164293	5.19371326901756	5.54695431910324	5.76957113270525	-0.236145388562061	0.406250677049806	0.702804245383133
Merged-chr9-111086335-3	chr9	111086238	111086438	+	784.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28820.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	4.27421536903139	4.43381966748878	4.42755737152442	4.57771351194229	3.39222096141944	3.78829088767252	3.65194876366986	3.66339031361945	-2.43228826807712	5.69246759540689e-07	2.08535332461898e-05
Merged-chr13-99197128-2	chr13	99197028	99197228	+	979.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	12305.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	3.24649023281771	3.33642896693666	3.24688688500245	3.9808079905649	3.13359411169255	3.23003976115787	3.23541296345557	3.24528265160052	-1.07511303549611	0.0739330126301214	0.29296208350495
Merged-chr10-80597290-4	chr10	80597184	80597384	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-5596.0	NM_001100606	100113398.0	Mm.273170	NM_001100606	ENSMUSG00000113640	Adat3	A430024H01Rik	adenosine deaminase, tRNA-specific 3	protein-coding	5.14443726107119	5.20388348385684	5.4844886215069	5.63303399718977	5.78644539971403	5.01196134292987	5.37360359677442	5.58435879734277	0.153206813245733	0.640670543346637	0.848256856489403
Merged-chr8-40321223-2	chr8	40321131	40321331	+	830.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_030110, intron 1 of 14)	ORR1E|LTR|ERVL-MaLR	13180.0	NM_030110	78506.0	Mm.169893	NM_030110	ENSMUSG00000039478	Micu3	2900075B16Rik|Efha2	mitochondrial calcium uptake family, member 3	protein-coding	2.79789431832612	2.72433876752468	3.12070958661076	2.82707395220627	2.9033979220517	3.17494954209886	3.36286882350876	3.17486112112636	1.18428938923044	0.0524695575055405	0.23868453503961
Merged-chr7-30393264-5	chr7	30393124	30393324	+	902.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-20564.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	4.05108320749896	4.08217827599299	4.43004028182443	4.0456300882452	4.49808085964775	4.56059123912115	4.63204736449697	4.46747861667153	0.92261146305387	0.0155791785021289	0.107737142898115
Merged-chr5-21515090-4	chr5	21514983	21515183	+	802.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199632, intron 17 of 20)	B1F|SINE|Alu	-28444.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	3.26548830060744	3.0469323881768	3.43773462242431	3.21763263401883	3.43357293424968	3.55343378883971	3.47559652258486	3.43577785941405	0.806199524691731	0.120883804952941	0.385007066500925
Merged-chr11-52080174-4	chr11	52080064	52080264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	-18660.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	7.87542091185111	7.87785971778549	7.73062570468903	7.98082855415661	7.84555187157764	7.64621274489316	7.86732972627923	7.80436300818742	-0.102768302433522	0.536989447351614	0.790878600282243
Merged-chr11-97404768-2	chr11	97404668	97404868	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42217.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	3.10479875965876	3.09566544646456	3.16157413885828	3.07407084081615	3.01778650935597	2.95708882620153	2.97455854352492	3.15985194384638	-0.318439526206643	0.575103083320125	0.81272502373833
Merged-chr7-35124947-4	chr7	35124842	35125042	+	968.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5649.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	4.96455747398945	4.94302451891484	4.96538838433616	4.76702405390812	4.85163753183917	4.8389851391436	4.87261780879575	4.99529323336426	-0.0218182729658188	0.945664420208956	0.980596379383872
Merged-chr5-120891265-4	chr5	120891164	120891364	+	845.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3651.0	NR_126529	23960.0	Mm.389688	NM_011852	ENSMUSG00000066861	Oas1g	AI449562|L2|Mmu-L|Mmu-L2|Oas1b|Oias-1|Oias1	2'-5' oligoadenylate synthetase 1G	protein-coding	4.41538471294045	4.42333020790808	3.88570873079512	4.2992032806642	4.12382039460458	4.46274129762503	4.35575208543157	4.10183380650022	-0.0287385702047738	0.945180190911648	0.980356733098728
Merged-chr17-78835464-4	chr17	78835365	78835565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081179)	promoter-TSS (NM_001081179)	-51.0	NM_181649	53951.0	Mm.220253	NM_181649	ENSMUSG00000050668	Gpatch11	2310002B06Rik|C80922|Ccdc75|L26697	G patch domain containing 11	protein-coding	8.86522500194147	8.97423596861959	8.95272141585852	9.11653327568329	8.7672040919281	8.95194186725623	8.90553095640056	8.66863711738556	-0.196693792456417	0.194842395664101	0.495522612583074
Merged-chr11-79119020-4	chr11	79118906	79119106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	27467.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	6.92896133561019	7.0430353170282	6.6547452136823	6.96356441751444	6.87843233165917	7.10658741671861	6.90800396996615	6.97626868709142	0.0743982855154236	0.709690104748143	0.883704992355642
Merged-chr10-84109888-4	chr10	84109775	84109975	+	949.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-9178.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	4.38303937408985	4.2821401687573	4.29038261184983	4.26867653609048	4.55278594026291	4.72375836679325	4.71272225043858	4.66247779133063	0.809243074522843	0.022675161320577	0.139125532940035
Merged-chr15-86446303-3	chr15	86446212	86446412	+	947.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358062, intron 8 of 9)	MTC|LTR|ERVL-MaLR	168637.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	4.35952174634481	4.09905480401094	4.4003524041178	4.64649166769699	4.03187342750607	3.8004058654768	4.29909056739355	4.22893266492985	-0.741776340388995	0.0876472337266667	0.322855399299144
Merged-chr11-84179576-4	chr11	84179460	84179660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12084.0	NM_001037932	628813.0	Mm.390389	NM_001037932	ENSMUSG00000051452	Gm11437	AI463690	predicted gene 11437	protein-coding	8.98910713199079	8.9529822069043	8.88497028134034	8.74820813828937	8.8450612809168	8.87457819100102	8.93644620792117	8.63251218194641	-0.0820200452769419	0.59106521400485	0.821418854067929
Merged-chr8-70744442-4	chr8	70744353	70744553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201607, intron 3 of 16)	CpG	-10226.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	5.60591809770546	5.96110803701242	6.32486267590141	6.27589269688144	5.19311250223667	5.54548613995152	5.68379601444236	5.39357038437306	-1.02966226925634	0.000559026938880589	0.00844281317262495
Merged-chr1-151564589-4	chr1	151564499	151564699	+	891.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6774.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	4.29639369690725	4.49690080135395	4.3443068642098	4.54098817650469	4.4985402239106	4.27109096400184	4.87520153479365	4.63102936158189	0.343683712733538	0.368644692400651	0.673101867894841
Merged-chr9-119261951-4	chr9	119261845	119262045	+	906.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359582, intron 9 of 18)	intron (NM_001359582, intron 9 of 18)	-30253.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	4.33869067791177	4.27816660784005	4.50675363875178	4.79036726322123	4.45284597021596	4.16372217421454	4.27523652564806	4.46406247391852	-0.375899137990602	0.349524801839925	0.657040165592606
Merged-chr8-120669053-4	chr8	120668939	120669139	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010926)	promoter-TSS (NM_010926)	719.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	3.86891853038059	3.98924904298131	3.69923457949685	3.96886883091456	4.26873490800001	3.93351057527007	4.40654072818512	4.28048625633669	0.902840518232221	0.0365189047615001	0.190179918204479
Merged-chr5-107646137-4	chr5	107646034	107646234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359917, intron 11 of 12)	B1_Mur1|SINE|Alu	-12284.0	NR_046195	78443.0	Mm.490703	NR_046195	ENSMUSG00000085900	A930041C12Rik	-	RIKEN cDNA A930041C12 gene	ncRNA	5.91673846992724	5.87618294880801	5.46150888803891	5.92097944848169	5.42248410080167	4.93831596951894	5.37535289384698	5.39852766258484	-0.871496629621057	0.00333231461354902	0.0346618181905313
Merged-chr5-119240781-1	chr5	119240681	119240881	+	765.5	f0_balb.idr	Intergenic	Intergenic	-40763.0	NR_046033	665194.0	Mm.491047	NR_046033	ENSMUSG00000107334	Gm7538	EG665194	predicted gene 7538	ncRNA	3.56980614533569	3.36063014074682	3.25162400613888	3.25127763129004	2.4553940214436	2.62043261031236	2.58976261823095	2.59479229196929	-6.23148339877943	3.51748835454576e-08	1.67472443871714e-06
Merged-chr17-57104576-3	chr17	57104474	57104674	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009404)	promoter-TSS (NM_009404)	-811.0	NM_009404	21950.0	Mm.41171	NM_009404	ENSMUSG00000035678	Tnfsf9	4-1BB-L|4-1BBL|AI848817|Cd137l|Ly63l	tumor necrosis factor (ligand) superfamily, member 9	protein-coding	3.81353377842227	3.97497196672918	3.34460530412955	2.90056382082017	4.72307487479169	4.89789081691183	3.73949840585743	3.81176860653231	1.98779533727935	0.0367311487025244	0.190824497007298
Merged-chr11-62576698-4	chr11	62576590	62576790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011706, intron 2 of 15)	intron (NM_011706, intron 2 of 15)	2204.0	NM_011706	22368.0	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	5.91508856520029	5.49300018427209	5.76471434814609	5.49399759499344	5.48197446358735	5.56951932824471	5.45474682900426	5.50674332895419	-0.276530693718783	0.318932518057633	0.630823985405764
Merged-chr4-59596795-4	chr4	59596685	59596885	+	913.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301367, intron 5 of 11)	intron (NM_001301367, intron 5 of 11)	15222.0	NM_024255	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	4.52865952149065	4.1379094556689	4.52938130282449	4.8537257188718	4.44639242720421	4.48525778597268	4.3819907272909	4.74872651119093	-0.0732228971048743	0.855714568838674	0.945737752088283
Merged-chr13-112131334-4	chr13	112131164	112131364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157187.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	5.57176273142538	5.42072285046026	6.0012085195666	6.19276717372978	5.84452986972311	6.25851142247642	5.90493099610371	6.36473086726171	0.402963806577825	0.186614549719811	0.484625049457725
Merged-chr11-76605838-4	chr11	76605754	76605954	+	938.462524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-28115.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	4.66660056805101	5.18637324092135	5.29004012841347	4.73533156504936	5.19552773319636	4.89053047197562	4.64614141909434	5.36557903209549	0.130641167001942	0.725841837761271	0.890921883682774
Merged-chr17-71300553-4	chr17	71300475	71300675	+	975.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	10436.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	5.63054947919135	5.27206654927166	5.05413077794566	5.89438298284081	5.42698831735435	5.27144146672533	5.50199765608004	5.4992617316436	-0.166228519252995	0.609328800882285	0.830965527033762
Merged-chr5-29378446-4	chr5	29378326	29378526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020295)	promoter-TSS (NM_020295)	-36.0	NM_020295	56873.0	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	7.22774541012175	7.37786718368557	7.38872864212753	7.32207852966526	7.51158820780386	7.60518172095656	7.77831606373983	7.27945422872598	0.299150482499859	0.11017151277828	0.366573710612399
Merged-chr9-102615309-3	chr9	102615213	102615413	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001301689, exon 6 of 15)	exon (NM_001301689, exon 6 of 15)	10811.0	NM_001301689	28135.0	Mm.38910	NM_001081122	ENSMUSG00000032534	Cep63	4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2	centrosomal protein 63	protein-coding	4.061530737392	4.0542358706739	4.22878869954641	3.60504533329009	5.02644065069619	4.77104700987169	4.82169191610465	5.28038339570411	2.32515711640909	5.32119945387576e-09	2.97298003082749e-07
Merged-chr17-45718650-2	chr17	45718550	45718750	+	818.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15194.0	NM_028164	72240.0	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	2.97643471594853	2.7645465894363	2.79601983803146	2.74029073944546	2.70043082562602	2.96744413636053	2.84882983339099	2.85769213551153	0.116138981237399	0.850630474405905	0.943633424218446
Merged-chr5-23435349-7	chr5	23435194	23435394	+	987.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040469)	promoter-TSS (NR_040469)	865.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	4.17768448587086	4.0117894176492	4.27271796150464	3.98518451496286	4.31036968853212	4.35465744023993	4.73442206653066	4.55422481447708	0.941685494153651	0.0167314614345354	0.113339537239035
Merged-chr4-89363503-1	chr4	89363403	89363603	+	718.0	f0_balb.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-52471.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	3.49432912942849	3.3639982111736	3.49482103087363	3.69705932433485	3.00176318650402	3.30719371488402	3.80585128077389	3.32105849734079	-0.441780995861478	0.448695235718331	0.733878953633932
Merged-chr9-78588055-5	chr9	78587899	78588099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276452)	promoter-TSS (NM_001276452)	46.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	7.62500261030556	7.75205801859868	7.92754526836222	7.90556716073228	7.93516032330134	7.9713061702143	7.95775447087809	8.06197874082338	0.217325293204079	0.190316818186951	0.489452447654893
Merged-chr17-50522657-3	chr17	50522536	50522736	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	13089.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	4.92270394828695	5.05744919506456	4.70928708010942	4.97597936442763	3.36655169396868	3.69590672395593	3.55308140911739	3.56368563197477	-4.47245696524274	1.24631997996413e-12	1.30458543902745e-10
Merged-chr8-25993212-2	chr8	25993112	25993312	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029037, intron 1 of 4)	B3|SINE|B2	909.0	NM_029037	74653.0	Mm.17631	NM_029037	ENSMUSG00000037251	Pomk	4930444A02Rik|Sgk196	protein-O-mannose kinase	protein-coding	3.09360686355623	3.19104620945481	3.47160756298235	2.86421602097024	2.9519162715698	3.38502113369437	2.88352035332178	3.21182469420497	-0.184624742086238	0.766989118342124	0.908816541333989
Merged-chr2-118263570-4	chr2	118263489	118263689	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6623.0	NM_027759	71313.0	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	5.72521702769706	5.89945955248333	5.8254699965368	5.5972641364816	6.33220234397087	6.17731152085811	5.88718220657451	5.29896648417955	0.365684424807124	0.234602165151169	0.544447848974703
Merged-chr6-83613451-4	chr6	83613362	83613562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40958.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	5.7224766977349	5.85185969862385	5.59809875499579	5.70005763412776	5.32795274648488	5.57545582185732	5.64606588602945	5.36374995954387	-0.416957438355584	0.122766348247233	0.388338187800632
Merged-chr13-102887681-2	chr13	102887581	102887781	+	728.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	B1_Mur1|SINE|Alu	127426.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	3.2669002736015	2.99609248918025	3.09655902652756	3.14195504021387	3.27425145980252	3.20671257136341	2.82069194895845	3.26549537962118	0.114256531362392	0.846045476817635	0.941772034818004
Merged-chr9-9237770-4	chr9	9237668	9237868	+	869.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045754, intron 2 of 3)	intron (NR_045754, intron 2 of 3)	1245.0	NM_027823	71544.0	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding	4.09908767587441	3.89487306077717	4.05226695246199	4.31804945414799	4.40720722370926	4.07383956747299	3.93595604744077	4.00071194317239	0.0435883155252022	0.921313277544653	0.970837889831688
Merged-chr5-20257327-1	chr5	20257227	20257427	+	595.0	f0_balb.idr	intron (NM_001170746, intron 6 of 22)	intron (NM_001170746, intron 6 of 22)	349809.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	2.83144062984993	2.67034282617149	2.7185440657511	2.68146882111301	2.25301803049182	2.40631805176158	2.45009437096451	2.65648917335638	-1.60076365863941	0.0347230560812149	0.184454036276042
Merged-chr13-74639108-4	chr13	74639017	74639217	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030711)	promoter-TSS (NM_030711)	-736.0	NM_030711	80898.0	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	A-LAP|ARTS-1|Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	5.10512294394299	5.48918822213319	5.14003849281931	5.72033055368213	5.35891029387792	5.24744740097266	5.11499447042262	4.79267257323097	-0.465412837471583	0.17071758744785	0.463921931697421
Merged-chr18-38253124-4	chr18	38253035	38253235	+	836.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024179, intron 4 of 12)	intron (NM_024179, intron 4 of 12)	-2570.0	NR_027904	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	4.09873482220219	4.14824759254001	4.79031208400213	4.72614940502353	4.01247843174955	3.73795684163075	4.22485919467487	4.28590120521647	-0.986675094678854	0.0349991149267389	0.185274579902599
Merged-chr15-97824133-4	chr15	97824038	97824238	+	895.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	7629.0	NM_019572	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	5.15603287755614	4.75603984778099	4.82086087959618	4.62926894883432	4.32217984995079	4.63681685415413	4.52746494016948	4.70788798168799	-0.635845428352368	0.0862156808055422	0.320105677536784
Merged-chr1-45906816-4	chr1	45906701	45906901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18793.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	5.15655040625598	5.14504167798796	5.31084058387756	5.19577346046716	5.24778517312167	5.26521502035603	5.16423991333041	5.21747588538923	0.0428910134313704	0.881557729611461	0.955384724180766
Merged-chr10-91167074-4	chr10	91166973	91167173	+	813.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080129, intron 1 of 8)	B3|SINE|B2	3477.0	NM_001283048	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	3.68181568937646	3.59777112384269	3.83856894724192	3.59531474664638	4.00015940714726	4.00827919957694	3.86976460189303	3.62386736865517	0.626863430814269	0.170869780766085	0.464014859975631
Merged-chr13-88730444-2	chr13	88730344	88730544	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-91028.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	3.0389850279328	2.95034199331799	3.49875419522047	2.91902158978075	3.40232833107615	3.34545935606177	3.52970189707757	3.16843724236578	0.93853255659328	0.108279828355412	0.363192408916317
Merged-chr13-95892100-4	chr13	95891969	95892169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027711)	promoter-TSS (NM_027711)	-147.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	6.70577737852711	6.4829927171886	5.98379069352997	6.37164309612467	6.81301845967999	6.89724802273634	6.74285361358914	6.86493470118772	0.603256243552019	0.00837520977957886	0.0693184949884469
Merged-chr4-116666892-4	chr4	116666768	116666968	+	907.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-15194.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	4.41547319102452	4.61028049287724	5.16286415037539	5.279839697837	4.45047975406889	4.54826606393123	4.61581100772687	4.55042610787308	-0.827213489548412	0.0386249679664851	0.197265307805585
Merged-chr2-69790483-4	chr2	69790397	69790597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028521, intron 2 of 3)	intron (NM_028521, intron 2 of 3)	760.0	NM_028521	73373.0	Mm.9621	NM_028521	ENSMUSG00000027088	Phospho2	1700048E23Rik|AI661517|AU021728|AV006103|Phos2	phosphatase, orphan 2	protein-coding	6.00386250791776	6.24663487853355	6.027835839923	6.06895900610729	6.29195465000458	6.68646304356484	6.43192023646808	6.25140785902352	0.495751666942823	0.0341289654065994	0.182402795837642
Merged-chr11-82908404-4	chr11	82908315	82908515	+	988.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145431)	promoter-TSS (NM_145431)	-20.0	NM_145431	217011.0	Mm.29176	NM_145431	ENSMUSG00000020692	Nle1	AL022765|BC018399|Nle|l11Jus1|l11Jus4	notchless homolog 1	protein-coding	4.88618850906312	5.24935183014915	4.62238507564364	5.19053829986883	5.30354425117611	5.34712933179757	5.35245776717894	5.48004406172367	0.626443587301624	0.0534185298833791	0.241215348510375
Merged-chr3-88627733-4	chr3	88627637	88627837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	6343.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	6.21131688717491	6.05639441322243	6.07018785698514	6.30300490094528	6.20162320353689	6.22454065033286	6.35822705942239	6.04426686948992	0.0563744833205164	0.808263359925746	0.926004687049714
Merged-chr11-73049482-2	chr11	73049382	73049582	+	726.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_025818, intron 1 of 12)	intron (NM_025818, intron 1 of 12)	1615.0	NM_025818	66874.0	Mm.41903	NM_025818	ENSMUSG00000020783	Ncbp3	1200014J11Rik|C130061O14Rik|C78393	nuclear cap binding subunit 3	protein-coding	3.52131581924858	3.44293894920227	3.46462625026432	3.3314323647339	3.44356679347097	3.79885483625528	3.71169032232721	3.6773721001023	0.728451814969623	0.135139578712796	0.409283505651115
Merged-chr15-12205605-2	chr15	12205505	12205705	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 1 of 15)	CpG	577.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	4.62079014892913	5.05790677264933	5.24700116040063	5.00372654041759	5.17614503744263	5.35943129198095	5.03445676935599	5.15297343392283	0.344599934568997	0.285799167936322	0.597477154288458
Merged-chr1-128615109-4	chr1	128615002	128615202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22803.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	6.01621566537366	5.63257449946276	6.07601367569236	6.24204942922896	5.74038835239772	5.65324360148984	5.41627975029739	5.43951714389727	-0.726317414775579	0.00993858111276902	0.0785671107314289
Merged-chr10-7816684-3	chr10	7816598	7816798	+	640.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026141, intron 12 of 12)	intron (NM_026141, intron 12 of 12)	-15772.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	3.4285485927244	3.5803360331816	3.37079537879169	3.65158461684769	3.52658443527496	3.48289547236549	3.29943848733064	3.63645577696629	-0.100218746278104	0.844119128756622	0.94088019607581
Merged-chr5-90654607-2	chr5	90654512	90654712	+	945.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14085.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	3.48752046037665	3.75380607776684	3.91253135483361	3.9162297736357	3.77090464619366	3.66528333200459	3.93907562565052	3.54742473156127	-0.135856439156427	0.778711766070638	0.913781420202775
Merged-chr11-8605985-4	chr11	8605948	8606148	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	58487.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	3.72098976981854	3.85842145278823	3.5015930498727	3.48409114859394	3.84809930914259	3.98328888746818	3.48933187171276	3.55800557556223	0.285084377164616	0.567909608423941	0.808351591137394
Merged-chr7-12478312-4	chr7	12478232	12478432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039951)	promoter-TSS (NM_001039951)	27.0	NM_026112	67370.0	Mm.98929	NM_026112	ENSMUSG00000030386	Zfp606	2410022M24Rik|AW494727	zinc finger protein 606	protein-coding	7.10637488585062	6.8996862493179	6.63359848519826	7.22487336012672	6.88657409656949	6.5594417931571	7.24947364816989	6.78337439168858	-0.136472152514775	0.570245048183132	0.809916884259967
Merged-chr9-75071369-5	chr9	75071266	75071466	+	882.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010864, exon 1 of 41)	5' UTR (NM_010864, exon 1 of 41)	160.0	NM_010864	17918.0	Mm.3645	NM_010864	ENSMUSG00000034593	Myo5a	9630007J19Rik|AI413174|AI661011|Dbv|MVa|Myo5|MyoVA|Sev-1|d|d-120J|flail|flr	myosin VA	protein-coding	4.10943368166733	3.90208392993507	4.02032757918848	3.95135182046324	4.03327443337965	3.82387905385899	3.90740516458801	4.06356521419694	-0.0766223233746113	0.857018493827449	0.946159157665131
Merged-chr16-45676685-2	chr16	45676585	45676785	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172455, intron 9 of 17)	L2a|LINE|L2	16973.0	NM_172455	208171.0	Mm.186306	NM_172455	ENSMUSG00000033177	Tmprss7	B230219I23Rik|Gm1748	transmembrane serine protease 7	protein-coding	1.97865398078583	2.0800411649547	1.97877924626292	1.93932222026488	2.48191925774611	2.45057282791955	2.33458837297736	2.40491995236358	3.00132498806041	0.000313556665136054	0.00525144702769863
Merged-chr13-34709773-3	chr13	34709680	34709880	+	960.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29862.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	3.9293603381497	4.22943158005702	4.12030980008366	4.2519284747846	3.46530566538239	4.3329897443227	3.75196179946488	3.82106376488273	-0.72964635685235	0.140271402890933	0.416387554433365
Merged-chr1-84881745-4	chr1	84881652	84881852	+	940.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025386, intron 2 of 3)	RMER15|LTR|ERVL	41911.0	NM_025386	66153.0	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	4.25663564158109	4.41997684490041	4.52312370221565	4.83187059398396	5.27709595238888	5.17930572679296	5.42365301985285	5.35047350321619	1.4784586991953	5.30184361211199e-05	0.00119122451536149
Merged-chr14-51093642-4	chr14	51093542	51093742	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021472, intron 1 of 1)	intron (NM_021472, intron 1 of 1)	-2358.0	NM_007447	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	5.2213073868394	5.19047719995136	5.03825925442835	5.65249632164678	5.66858309891384	5.77867392481694	5.74222325609604	5.67533162196848	0.664021943979284	0.0289236798398977	0.163402979507105
Merged-chr13-48513468-4	chr13	48513356	48513556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164575)	promoter-TSS (NM_001164575)	-20.0	NM_001164576	67911.0	Mm.251375	NM_026450	ENSMUSG00000050954	Zfp169	1700025J14Rik|4930429A13Rik|BE688704	zinc finger protein 169	protein-coding	6.70485461272556	6.62551246073433	6.22339108652077	6.772451909741	6.61357082099259	6.62979554439908	6.74112803502554	6.17631714174764	-0.0712609616010674	0.768636763566353	0.90939721515425
Merged-chr10-60933042-4	chr10	60932939	60933139	+	938.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033616, intron 1 of 2)	intron (NR_033616, intron 1 of 2)	5093.0	NR_033616	73616.0	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	4.38954133895248	4.58676502257575	4.28960247981729	4.26379169918022	4.93379838643332	5.04204758730482	4.9428428249395	4.83410295704414	1.19328930216811	0.000509605153464754	0.00783099853593862
Merged-chr1-92034462-3	chr1	92034378	92034578	+	914.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 3 of 26)	intron (NM_207225, intron 3 of 26)	145863.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	3.58745356513773	3.59526429041692	3.80678617358072	3.11784581578314	5.03253924173302	4.55421566160953	5.28635909152914	5.43862753957657	4.10586368761009	1.25188885588177e-18	3.49161624016472e-16
Merged-chr8-126929695-4	chr8	126929600	126929800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_024214)	TTS (NM_024214)	16221.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	6.08093685233703	6.96644463449541	6.41372426648384	5.9913818531516	6.46938667343335	6.4450556466942	6.13659793319825	6.22478660563091	-0.135318609191583	0.642957252753369	0.849459897971419
Merged-chr7-67360057-3	chr7	67359974	67360174	+	771.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 1 of 11)	L1MC4|LINE|L1	12784.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	3.14266534099362	3.1425002626242	3.20219904447149	3.14621088190079	3.51363074952012	3.25324401060793	3.07095065165917	3.07965981681304	0.357672066828958	0.523757833380756	0.782645984427275
Merged-chr16-17222373-4	chr16	17222269	17222469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-11218.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	5.50452794659414	5.95617541717499	5.50549576589545	4.537708658796	5.72374768085546	5.71107587174406	5.47748862839031	6.1890420534757	0.550989617144996	0.15404766429797	0.439181632779434
Merged-chr12-54697258-1	chr12	54697158	54697358	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-1364.0	NM_025456	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	4.43132655817152	4.76791012264284	5.15876902519218	4.42491728533276	4.35111465917447	4.16414077136772	4.07555073342911	3.97507667303057	-1.32709690837195	0.00257799170029863	0.028373970014661
Merged-chr11-69758263-2	chr11	69758153	69758353	+	1000.0	f0_balb.idr|f0_c57.idr	5' UTR (NM_001291068, exon 1 of 29)	5' UTR (NM_001291068, exon 1 of 29)	380.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	7.60169380296345	7.65542853219506	7.41667288984404	7.32571544617091	7.82884616672963	7.74510237567191	7.68096710603526	7.41154005906889	0.237002533142497	0.209455219883448	0.513955222562189
Merged-chr3-53522923-3	chr3	53522826	53523026	+	706.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172862, intron 18 of 23)	intron (NM_172862, intron 18 of 23)	34133.0	NM_153156	229277.0	Mm.222810	NM_153156	ENSMUSG00000027744	Stoml3	Epb7.2l|SLP3|sro	stomatin (Epb7.2)-like 3	protein-coding	2.76166786196991	2.71358833674384	2.87324749560964	2.87062975510348	2.51780430639728	2.37387471335042	2.49864103778539	2.50440850441269	-1.84807447231506	0.0120115045295156	0.090015464403705
Merged-chr19-58942994-4	chr19	58942891	58943091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178689)	promoter-TSS (NM_178689)	-434.0	NM_178689	226265.0	Mm.103154	NM_178689	ENSMUSG00000048029	Eno4	6430537H07Rik	enolase 4	protein-coding	5.12842476462457	5.80978102704379	6.02005903670422	6.01308364266595	6.00986328812394	6.13117870225227	5.76439376552286	6.2071543859553	0.375541709514019	0.216808394687758	0.52353376278047
Merged-chr10-78465063-4	chr10	78464988	78465188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172134)	promoter-TSS (NM_172134)	-140.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	9.03952943942083	8.92232463205536	8.80407098457653	8.87130934170893	8.9375973517222	8.81617044697247	9.02089575292913	8.8306976124607	-0.00699620995589731	0.961805755986347	0.98629351085777
Merged-chr2-79257124-4	chr2	79257038	79257238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010576, intron 2 of 27)	intron (NM_010576, intron 2 of 27)	1712.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	7.03442428252011	6.84861466128949	6.88248316830789	7.21762503867868	7.06289856953096	6.83807492839843	6.88753516082627	6.83623055834966	-0.139210864471452	0.496930832387187	0.766809941166613
Merged-chr12-111462403-3	chr12	111462289	111462489	+	942.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	19728.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	3.20400637227978	3.61760423917452	3.31579771797326	3.32606474503794	3.20447440830553	2.82491437449324	3.13379067432264	2.94717723735179	-1.30456640437526	0.036207745694198	0.189140696518958
Merged-chr6-86849374-4	chr6	86849280	86849480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028298)	promoter-TSS (NR_028298)	60.0	NR_028298	67170.0	Mm.119489	NR_028298	ENSMUSG00000100164	2610306M01Rik	-	RIKEN cDNA 2610306M01 gene	ncRNA	6.12033048059974	6.45748826901173	6.39718052574752	5.95874595235188	5.74541533196881	6.21292248394119	6.16927889476655	6.15746226972727	-0.254245708592477	0.334000003877895	0.644747817536536
Merged-chr16-8736168-4	chr16	8736056	8736256	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003918, intron 1 of 30)	intron (NM_001003918, intron 1 of 30)	2186.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	4.95269655148719	5.29828234723132	4.88022574410074	5.42996509675267	4.88410623335403	4.93929960799662	4.81925404515669	4.87700192367571	-0.587869241843708	0.0789303831997563	0.304016452145991
Merged-chr11-58928484-4	chr11	58928394	58928594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10412.0	NM_022423	108660.0	Mm.249986	NM_022423	ENSMUSG00000020496	Rnf187	2410016F01Rik|AB030190|RACO-1	ring finger protein 187	protein-coding	6.94423253588207	6.80500417584093	6.95840855153186	6.52477274960628	7.39914776425259	7.08278980029265	7.20891915175437	6.95348466811451	0.520131491155988	0.0158492151873381	0.109037396369449
Merged-chr16-92038131-4	chr16	92038022	92038222	+	958.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20200.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	4.80758889422239	5.04375598584809	5.18887328084612	5.02636514884772	5.03273042098596	4.33947883089562	4.30242518353499	4.68918700924171	-0.775301403837133	0.0476578175341417	0.225143412375567
Merged-chr8-60993089-5	chr8	60992976	60993176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293637)	promoter-TSS (NM_001293637)	-117.0	NM_001293637	18004.0	Mm.486881	NM_175089	ENSMUSG00000031644	Nek1	D8Ertd790e|kat	NIMA (never in mitosis gene a)-related expressed kinase 1	protein-coding	7.92982602662793	8.14415908738697	7.95286196847687	7.94995249650416	8.32633349207616	8.34139577138563	8.48037436426162	7.86600642174007	0.355161204104383	0.0549079764041729	0.244788604063173
Merged-chr9-45520720-2	chr9	45520620	45520820	+	950.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-89488.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	2.50149608680527	2.5723153183543	2.42083153227537	2.37513162740145	2.99193654455953	3.02077034797188	3.05757330034457	2.96309625232348	2.78395098723221	3.43502237393212e-05	0.000814190667845869
Merged-chr1-193888200-3	chr1	193888102	193888302	+	807.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	334557.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	3.69341731460961	3.81321644296255	4.45266606806655	3.62586286060413	3.33350615046691	3.57513127174703	3.78225313498478	3.45393100187685	-1.18327318230553	0.0306352598047583	0.169589917377733
Merged-chr2-75685612-4	chr2	75685498	75685698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010902, intron 1 of 4)	intron (NM_010902, intron 1 of 4)	19065.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	7.85434513729176	7.97007179552389	7.84817174661556	7.96972694132673	7.83046380768612	7.97187906536123	7.83985149367936	7.87253557664795	-0.0505114490489973	0.750494470671086	0.901823997485197
Merged-chr2-84727666-1	chr2	84727566	84727766	+	1000.0	f1_balb.idr	promoter-TSS (NM_133840)	promoter-TSS (NM_133840)	-398.0	NM_133840	98985.0	Mm.21583	NM_133840	ENSMUSG00000027079	Clp1	AI462438|Heab	CLP1, cleavage and polyadenylation factor I subunit	protein-coding	7.52872529669996	7.25438497815355	7.49306290996679	7.57722808781275	7.55574392796607	7.58305651314038	7.70130096450788	7.62947595461601	0.189971041998162	0.28083997377185	0.593011818198245
Merged-chr2-30594971-4	chr2	30594864	30595064	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030137)	promoter-TSS (NM_030137)	-80.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	5.1770616570559	4.7614847766383	4.98457663117737	5.01592428769769	4.61293896574454	5.12386569255294	5.02762457663507	5.31528574593882	0.0824154057053984	0.812081288657446	0.927419976441895
Merged-chr9-121284674-3	chr9	121284580	121284780	+	769.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7508.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	3.81269562445543	3.6108406562214	3.16312522216195	3.20986252232611	3.62174492112506	4.02753163295298	3.84118111905632	3.49588375114444	0.892013570968504	0.104657608725835	0.355749855460871
Merged-chr15-83563566-4	chr15	83563472	83563672	+	889.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009775)	promoter-TSS (NM_009775)	-1.0	NM_009775	12257.0	Mm.1508	NM_009775	ENSMUSG00000041736	Tspo	Bzrp|IBP|PBR|Tspo1	translocator protein	protein-coding	4.28181821262667	4.37281678840426	4.18575524887429	4.17982546116478	4.50247838039924	4.41052810026844	4.58757771455249	4.60659960282849	0.647673807659538	0.0781668087767577	0.302437045599886
Merged-chr11-70489839-4	chr11	70489720	70489920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15454.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	7.85728439981104	8.1642487060368	8.13319489695215	7.77003915982104	7.93914033339494	7.9901892764045	7.88621046970584	7.76824187412073	-0.113353557863771	0.525923116629061	0.783398169269435
Merged-chr12-110771081-4	chr12	110770963	110771163	+	906.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347428, intron 1 of 2)	ORR1A4|LTR|ERVL-MaLR	33131.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	4.21178435761843	3.95549215799792	3.96292121010605	4.11968131473732	4.33979059855116	4.03053463127897	4.7031044314711	4.29743057779254	0.731154054363945	0.081033350513579	0.308805699550596
Merged-chr1-165461099-4	chr1	165461021	165461221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027430)	promoter-TSS (NM_027430)	-87.0	NM_027430	70456.0	Mm.195625	NM_027430	ENSMUSG00000026568	Mpc2	0610006C01Rik|2010002I07Rik|2610205H19Rik|AA108335|Brp44|ESTM43	mitochondrial pyruvate carrier 2	protein-coding	9.49020315973101	9.63363045508071	9.5951009823961	9.64717232876817	9.46317091304769	9.53368925890393	9.77637101055847	9.41744244233706	-0.0485469855962953	0.741267325841274	0.898139463026673
Merged-chr5-24447785-4	chr5	24447677	24447877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022418)	promoter-TSS (NM_022418)	69.0	NM_022418	64295.0	Mm.150098	NM_022418	ENSMUSG00000028958	Tmub1	2010004O20Rik|AB030183|Hops	transmembrane and ubiquitin-like domain containing 1	protein-coding	6.78374988020516	6.75594981585173	7.25449760677096	6.94846849825169	6.57538224627292	6.60317060157409	6.75042811856433	6.82213306967929	-0.36819978455313	0.0890862727287523	0.325647305053022
Merged-chr7-110117001-3	chr7	110116900	110117100	+	889.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5059.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	3.85861560785268	3.52433602389039	3.6611305206665	3.89581757289053	3.1938967391124	3.78026729213937	3.88640612937335	3.54754792817104	-0.378869695755844	0.478477507365616	0.754537308566746
Merged-chr8-120783860-3	chr8	120783763	120783963	+	912.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45224.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	3.82141851037611	3.62786378525311	3.77428730854522	3.79704108730908	3.62261887420916	3.61999827170454	3.65851095135988	3.56155752401084	-0.441721950753172	0.342811807140254	0.6516462545027
Merged-chr11-90227670-4	chr11	90227553	90227753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21823.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	6.09800984071792	5.73161962230436	6.09909024067446	6.37728597143012	5.76561990582971	5.76965846135056	6.23475460468461	5.80438963566678	-0.318797696335772	0.251150459407182	0.562512226247446
Merged-chr14-121992773-3	chr14	121992585	121992785	+	998.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 6 of 8)	intron (NM_026861, intron 6 of 8)	-27492.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	2.94745142232474	2.93798805614092	2.86781732171169	3.00580006757232	3.68707470502772	3.68776526711486	3.8134172825209	3.56391472177372	2.71506135600562	9.68278067464909e-06	0.000267343151916543
Merged-chr7-44384631-4	chr7	44384537	44384737	+	793.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016663, intron 1 of 10)	intron (NM_016663, intron 1 of 10)	511.0	NM_016663	20981.0	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	3.94936503817867	3.83536455960004	4.13586920645812	3.35105348250742	3.83338731584491	3.85606589681687	4.2770347591889	4.29512901302964	0.65546627835029	0.191479186841819	0.490888808629048
Merged-chr9-47651617-4	chr9	47651526	47651726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	121274.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	6.89848673220815	7.0992889901171	7.30252153188017	7.40208393154375	6.72277394171952	6.73787050034312	6.93056466372332	6.98636656071449	-0.490038227153824	0.0201623565893729	0.128781082167532
Merged-chr4-74297113-4	chr4	74296996	74297196	+	953.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 3 of 20)	intron (NM_001356561, intron 3 of 20)	45217.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	5.05209976940826	4.31192541316361	5.44027454184932	5.53765472622397	4.92177032454936	4.62885177217945	4.85600762546094	4.75986109261093	-0.732079830817787	0.0791500651683274	0.304432210559623
Merged-chr12-17253283-4	chr12	17253235	17253435	+	880.9541630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13260.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	3.7487939684408	3.78482342274621	4.11844673976314	3.3887376165939	3.92437640923129	3.86996297902297	3.73408176932796	3.79950022608502	0.183100731505776	0.710608683960567	0.884197177759025
Merged-chr1-55239409-3	chr1	55239324	55239524	+	909.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175439, exon 1 of 1)	3' UTR (NM_175439, exon 1 of 1)	2247.0	NM_175439	212679.0	Mm.19223	NM_175439	ENSMUSG00000046994	Mars2	C730026E21Rik|MetRS	methionine-tRNA synthetase 2 (mitochondrial)	protein-coding	3.67324738906142	3.44112157529654	3.62196414353651	3.5693399212806	3.95307766545677	3.37139813158913	3.70774315446012	3.56604814703476	0.317884751177003	0.527158649569518	0.784187929900238
Merged-chr4-109665281-4	chr4	109665149	109665349	+	923.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007671, exon 1 of 2)	5' UTR (NM_007671, exon 1 of 2)	123.0	NM_007671	12580.0	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin dependent kinase inhibitor 2C	protein-coding	4.17411599107839	3.78758004518306	4.25941536332745	3.98388409899733	3.96749946393892	4.0031717150925	4.23968596940251	4.17213826085811	0.11080143804503	0.796013755282079	0.921022515153664
Merged-chr11-110427361-4	chr11	110427264	110427464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	28262.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	6.60666346619786	6.82017532175579	6.07306184793457	6.31999300333844	6.8906896460872	6.8445235243751	6.72020975771919	6.36378919906789	0.347293342818198	0.173652359822171	0.467754070758081
Merged-chr6-108065786-2	chr6	108065686	108065886	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178391, intron 1 of 1)	intron (NM_178391, intron 1 of 1)	741.0	NM_178391	74729.0	Mm.56539	NM_178391	ENSMUSG00000034639	Setmar	5830404F24Rik|Etet2	SET domain without mariner transposase fusion	protein-coding	5.11134047463434	5.10812777818025	5.17769284231794	5.08379415152208	5.14761279458618	5.25317644234031	5.48399123564339	5.14185426651273	0.266049063806864	0.368884204140435	0.673286034322581
Merged-chr15-95802953-4	chr15	95802840	95803040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	12097.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	5.69919634721303	6.16853277619361	5.72613765516734	5.87531193763597	5.94515019710191	5.97602126820201	5.61827328124865	5.72209303958448	-0.0941073315238863	0.724644205703537	0.890415158618739
Merged-chr2-129602068-4	chr2	129601960	129602160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	6598.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	5.40358638077686	5.36688961656705	5.77682390327617	5.3285537526609	5.71365282013653	5.75261345786934	5.85677459351218	5.70170463175576	0.488763887351801	0.071469776101905	0.286955505029191
Merged-chr18-74962298-4	chr18	74962117	74962317	+	809.270813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010720)	promoter-TSS (NM_010720)	-954.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	3.75710104334156	3.52036981025354	3.53577416759941	3.69160884450968	3.70730974217958	3.82460422035682	3.7914345377519	4.02903656763168	0.611434119143387	0.187079013205699	0.485314267518811
Merged-chr2-167351097-4	chr2	167350996	167351196	+	975.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1918.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	5.21557471461045	5.36944470342987	4.93925512461405	5.4576955526989	5.353613767384	4.72357671428494	5.12738500976861	5.43999942220527	-0.137204618762299	0.685494857657567	0.871409613223223
Merged-chr2-45194480-4	chr2	45194353	45194553	+	970.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77011.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	4.9393773779173	4.50149731229614	5.01163041575221	5.25032659821854	5.42395213590074	4.8792015459043	5.23653737708234	5.20101738577126	0.450845635355128	0.206830153616057	0.510823764960849
Merged-chr7-25827394-4	chr7	25827292	25827492	+	883.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10862.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	4.64939087097087	4.27212419965319	4.33340567368631	4.43402790174812	4.20038615099212	4.46204401893494	4.26897048408202	4.57508921283954	-0.118048682950953	0.760262791014368	0.90597557094845
Merged-chr18-14681909-1	chr18	14681809	14682009	+	1000.0	f1_c57bl6.idr	intron (NM_009280, intron 1 of 10)	intron (NM_009280, intron 1 of 10)	1005.0	NM_001161369	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	3.29491745374312	3.12938143861127	3.65052605021909	3.29122416216051	3.15744295202151	3.21836933903919	3.33942900244615	3.45788332951175	-0.198134303160214	0.719917352529217	0.888028373825666
Merged-chr16-76380373-4	chr16	76380267	76380467	+	896.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-6540.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	4.25802232503068	4.15387610230888	3.92367298786779	4.00355372545008	4.30138180400206	4.25053858495924	4.23932245880058	3.97490863901741	0.29728031961484	0.468909289216566	0.747999692905717
Merged-chr6-137688318-2	chr6	137688218	137688418	+	687.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39033.0	NM_007945	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	3.16950057943729	3.19361047839646	3.16993849695094	2.99549204543931	2.87638341028844	3.33936233943886	2.69332015260384	3.16816741326295	-0.369024635061506	0.561551411810051	0.80494560024742
Merged-chr9-63556530-4	chr9	63556429	63556629	+	830.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030068, intron 5 of 21)	intron (NM_030068, intron 5 of 21)	45964.0	NM_030068	78250.0	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	3.61787070904878	3.62680103169367	3.44460585954673	3.76403699147161	3.8254301717677	3.67792469666954	3.60449802057232	3.9062269382365	0.40188619929044	0.40074535243394	0.698466011432587
Merged-chr17-27652385-2	chr17	27652285	27652485	+	946.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-3206.0	NM_011861	23969.0	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	3.01941801884227	2.91534630764557	3.13139034109044	2.95002115265796	2.83305444414956	2.79511416832894	2.94961918047008	3.07512222763372	-0.376025421605912	0.531417638572448	0.787282522914462
Merged-chr11-79877368-4	chr11	79877263	79877463	+	887.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	85024.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	4.79955037349873	4.41234346689347	5.15846351846012	5.00730629936479	3.89344888416696	4.26874591451217	4.46816104857249	4.72606949051407	-1.11305562649756	0.0107352338010824	0.0831911551367611
Merged-chr2-60124841-4	chr2	60124741	60124941	+	975.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	899.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	5.00578162805188	5.6643961932996	5.54816510714944	5.36902392607953	5.82988222155344	5.9717488560366	5.49237840361855	5.98329290491487	0.690919636683635	0.0196681733777858	0.126555859054187
Merged-chr16-4879317-4	chr16	4879210	4879410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145359, intron 1 of 2)	CpG	541.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	5.81507541953415	5.05384038034441	5.93008602400186	6.11997210207473	5.88708610113072	5.86749339533743	5.83297198898561	6.0501225466371	0.180237870157419	0.569336965946682	0.809366519988776
Merged-chr14-44086775-3	chr14	44086676	44086876	+	891.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15878.0	NM_007895	13587.0	Mm.327386	NM_007895	ENSMUSG00000072596	Ear2	EAR-13|EAR-2|ECP|ECP 2|Raf3|Rnase2	eosinophil-associated, ribonuclease A family, member 2	protein-coding	3.44360424804002	3.48056913396216	3.71970344651362	3.30572049820945	3.8482994102974	3.84000860098705	3.88598995662292	3.31407796370608	0.805291123094445	0.116959347215034	0.378428536543429
Merged-chr19-32311230-4	chr19	32311119	32311319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	38097.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	6.23938117686118	6.4710948144733	6.64766629250831	6.43044641336435	6.27838969038817	6.1635101384995	5.97813695486239	5.88352368810242	-0.54424261472029	0.0231712781625344	0.141038858246198
Merged-chr2-71328962-4	chr2	71328887	71329087	+	897.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 4 of 17)	intron (NM_172436, intron 4 of 17)	38567.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	4.40449409193607	4.74276906624155	4.31225512285653	4.29051291949492	4.81225299923627	4.53522601282369	4.66348886921336	4.40243595084429	0.391268850694476	0.302962360147371	0.615482556585475
Merged-chr16-4586790-4	chr16	4586685	4586885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7928.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	9.48367237210989	9.53384990270868	9.28441880314712	9.26286026727013	9.23922420591576	9.38029544826222	9.45693513789615	9.01437079434076	-0.138132149299109	0.393899211040383	0.693084615297837
Merged-chr3-65891805-4	chr3	65891692	65891892	+	896.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66457.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	4.74122875905904	4.92967802286307	5.14143572987336	4.93058553402836	4.48459396334187	4.79582122177734	4.93330017097184	4.61599535776487	-0.480323112779326	0.165896439690329	0.456845174245986
Merged-chr11-70655955-6	chr11	70655857	70656057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-2177	-1219.0	NM_001136062	13808.0	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	5.0973115175508	5.17023623607812	5.19595959530618	4.6129822909999	5.19654676297789	5.33864852905544	5.10636436285169	5.5686876524211	0.543836646812253	0.104038534464328	0.354509973892308
Merged-chr4-12140288-4	chr4	12140186	12140386	+	941.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028226, exon 1 of 3)	5' UTR (NM_028226, exon 1 of 3)	169.0	NM_028226	72397.0	Mm.430709	NM_028226	ENSMUSG00000046667	Rbm12b1	3000004N20Rik|Rbm12b|Rbm12ba	RNA binding motif protein 12 B1	protein-coding	4.72138026080819	4.78628218820209	4.89585727642259	4.38839252240435	4.32394487858104	4.99981415098628	4.58380393360384	4.47387686061117	-0.190591085496888	0.626752649145199	0.840745294438696
Merged-chr3-100160799-4	chr3	100160666	100160866	+	988.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175552, intron 2 of 26)	intron (NM_175552, intron 2 of 26)	1641.0	NM_175552	269470.0	Mm.24591	NM_175552	ENSMUSG00000033285	Wdr3	AW546279|D030020G18Rik	WD repeat domain 3	protein-coding	5.10771814528291	5.09293688489982	5.67044731282684	5.30590968708697	5.02208946755659	4.78528092057364	4.62763376293408	4.77649503446696	-0.949820121042546	0.00579184820480151	0.052928227419382
Merged-chr9-53248200-4	chr9	53248109	53248309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029936)	promoter-TSS (NM_029936)	-97.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	8.34366460329114	8.57440701968808	8.48104285947976	8.39438805726206	8.65242889479116	8.56071997230118	8.32260959053843	8.46059296244472	0.0725587997824038	0.648150484264268	0.852019592695027
Merged-chr11-118146552-4	chr11	118146437	118146637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17318.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	6.85351247901693	6.82915805693705	6.42582089864942	6.84825130063747	6.6017539065035	6.97732157205736	6.19705157296199	6.40285800696506	-0.259172661832363	0.298337380009944	0.61047388226355
Merged-chr6-28864804-4	chr6	28864742	28864942	+	978.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	-33095.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	5.71077094151734	6.59201277044246	5.7852099692473	4.86451911423271	5.807818998154	5.96139363379122	5.52262117517705	5.225151541286	-0.38170101644124	0.518958905199478	0.779791707980163
Merged-chr12-70991954-4	chr12	70991868	70992068	+	964.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045055, exon 4 of 4)	non-coding (NR_045055, exon 4 of 4)	17345.0	NM_011184	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	4.51007286452953	4.2405054718081	4.63499962335422	4.42888693303967	4.85414583042593	4.64326224574012	4.65174540457278	5.06174650405503	0.778105572140647	0.0300782118862323	0.167496248149752
Merged-chr18-12796142-4	chr18	12796038	12796238	+	662.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252490, intron 3 of 13)	Lx7|LINE|L1	23769.0	NR_045524	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	3.81205352943923	3.71235053218095	3.53196644935402	3.95340748581503	3.95469107045984	3.64794861991073	4.02430937169873	3.85983344026627	0.309371456525376	0.511630886615589	0.775563823119751
Merged-chr9-123462000-4	chr9	123461909	123462109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001348167, exon 21 of 21)	3' UTR (NM_001348167, exon 21 of 21)	-16692.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	7.91150692182125	8.00875754826666	8.39546014901421	5.91803728522891	7.62247231920288	7.6419296314109	7.53984403680972	8.84449358254638	0.25764355807073	0.717385979676703	0.886969736012834
Merged-chr10-20312423-4	chr10	20312334	20312534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153787)	promoter-TSS (NM_153787)	-35.0	NM_001025392	72567.0	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	8.65764776436772	8.7384265064266	8.21120129632112	8.21089286965026	8.60550342482065	8.72861171014355	8.56201026024803	8.32946951336919	0.112830602356428	0.558314594326601	0.803077185199012
Merged-chr1-107528488-4	chr1	107528382	107528582	+	881.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198028)	promoter-TSS (NM_198028)	-521.0	NM_001160307	241197.0	Mm.123919	NM_198028	ENSMUSG00000092572	Serpinb10	9830131G07|BB233602|Serpinb10-ps	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 10	protein-coding	4.16857642529666	4.09472810615102	4.55632032079836	4.76339267177955	4.42845564817651	4.52773836179748	4.20039490697868	4.16674134211383	-0.235588676934609	0.582619160817491	0.81668109351953
Merged-chr10-96376730-4	chr10	96376626	96376826	+	778.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150519.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	3.33629484137107	3.32005292266047	3.54925267581334	3.38298794362136	3.46937276645082	3.50709485639315	3.26607059173813	3.14940613153304	-0.135511448143126	0.797854834147176	0.921862017583033
Merged-chr12-111157838-3	chr12	111157736	111157936	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8534.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	3.71365612039632	3.88238437890208	3.82095223513058	3.51160572064757	3.81812092750042	4.17916296683548	3.90246084614095	3.76650574125206	0.559876910141988	0.22584372507803	0.534436999479007
Merged-chr15-59249018-3	chr15	59248920	59249120	+	819.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57928.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	3.2753047518351	3.54871788741739	3.27572525867232	3.41819548531707	3.03272556816526	3.12986357100529	3.37297873609757	3.27402458382632	-0.684285554458032	0.216600894853609	0.523227960862861
Merged-chr2-145720335-4	chr2	145720235	145720435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 2 of 3)	intron (NR_033220, intron 2 of 3)	19140.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	5.84329183919078	5.78213610985165	5.56862933191324	5.59155745995389	5.83982344371478	5.68810408445772	5.67262092720596	5.77080820347899	0.0930977889826883	0.71736540033948	0.886969736012834
Merged-chr4-53196175-4	chr4	53196095	53196295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36300.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	6.04958799024098	5.9674543672542	5.73843052606043	5.88900881230638	6.1117793338834	6.5257189981675	6.26849184134999	6.04632915909485	0.511316416087488	0.0380517864496123	0.195304882297156
Merged-chr2-46185414-3	chr2	46185312	46185512	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	488807.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	3.59026792215147	3.85379007994909	4.26447419800472	4.17188727331361	3.63409538085111	3.83072381494047	3.99990474206268	3.87119869443939	-0.466321711606249	0.334549966986093	0.645071328704234
Merged-chr11-97435271-4	chr11	97435152	97435352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14908.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	8.005298332796	8.03469705545478	7.75954679470879	7.78740183013555	7.80731770295142	7.99185187023162	7.82927524989328	7.83209247062708	-0.0448462997339006	0.790787077300758	0.918885370783943
Merged-chr7-46546668-4	chr7	46546589	46546789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013789, intron 9 of 10)	MTE2a|LTR|ERVL-MaLR	93118.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	5.96008656391376	5.5336405342612	5.71005199602074	6.02395093423697	5.75004350593479	5.29380730685502	5.97104995765359	5.68051519575217	-0.212731820622438	0.464526813497356	0.74546949672923
Merged-chr4-48407496-3	chr4	48407394	48407594	+	784.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281978, intron 13 of 18)	B1_Mus1|SINE|Alu	65969.0	NM_172304	269536.0	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	2.93166955300248	3.29482645162634	3.47857764782775	3.0388332690278	3.52980396265033	3.25201535835011	3.19155264843907	3.47645641291705	0.637783209578977	0.268079239616411	0.579900081952789
Merged-chr12-32820996-6	chr12	32820833	32821033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021524, intron 1 of 10)	CpG	598.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	6.14940952768868	6.38778111488479	6.15049774930863	5.87210061663322	6.52701488727576	6.55016475611304	6.03463544048233	6.18645448396554	0.311833606809711	0.226123604421649	0.534678729418644
Merged-chr5-53378808-4	chr5	53378710	53378910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111704.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	6.29431128493843	6.49016867351739	6.81135037520878	7.08585095749398	6.77017608841749	6.69807518669337	6.7211104864529	6.85993377625798	0.0554937790823223	0.821515015003293	0.931717929460157
Merged-chr3-27984098-4	chr3	27983989	27984189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008875)	promoter-TSS (NM_008875)	-82.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	5.87278223524677	5.59677583842423	5.72828664593372	6.21947698781969	6.05136059017843	5.58936886266885	6.07212984856101	5.64477917046055	-0.0435478910793529	0.881974615288949	0.955526196981006
Merged-chr15-103255381-4	chr15	103255257	103255457	+	957.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008685)	promoter-TSS (NM_008685)	82.0	NM_008685	18022.0	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	4.77208606723208	4.65315910763287	4.50212365577838	4.5379343497236	4.71014424338225	4.58891311977874	4.7149463899382	4.4103063427141	0.0061658885496258	0.986114616447259	0.994892379755063
Merged-chr7-125594059-4	chr7	125593938	125594138	+	932.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9391.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	4.15852284327787	4.29067582346622	4.21038684492666	4.31550248371993	4.46632253506504	4.57103843638796	4.71618389021642	4.73621381530514	0.842693151647647	0.0227991033267203	0.139482718089567
Merged-chr10-127596901-4	chr10	127596799	127596999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	24249.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	8.40163231073744	8.74961330928777	8.70393837850538	8.48590442153299	8.37620874678637	8.54841688861113	8.6389884371666	8.23298334095734	-0.170002660997186	0.324704455538013	0.636242317919402
Merged-chr5-103753564-4	chr5	103753457	103753657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133919)	promoter-TSS (NM_133919)	-605.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	7.33295636313059	7.70702559626124	7.45505734121694	7.35066114543672	7.72194635023237	7.69762326420713	7.47430787537372	7.28613424204647	0.122885577309401	0.532625551550812	0.788200754532765
Merged-chr6-89632494-4	chr6	89632388	89632588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11500.0	NM_001178060	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	6.57565666195106	6.83208189416475	6.49039443187184	7.02277592136834	6.73805200074833	6.73745004080653	6.97509010884642	6.91997450810467	0.110021189328046	0.623211619496733	0.838922840312846
Merged-chr14-51896023-3	chr14	51895927	51896127	+	983.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039676, exon 4 of 4)	3' UTR (NM_001039676, exon 4 of 4)	2417.0	NM_001039676	214922.0	Mm.281343	NM_001039676	ENSMUSG00000072572	Slc39a2	F730005G13Rik|Gm1789|Gm289|Zip2	solute carrier family 39 (zinc transporter), member 2	protein-coding	4.20489758304864	4.25251061035387	4.35932140106556	4.64814243664383	3.4091804338487	3.42446853639149	3.44275995271329	3.58836945976084	-2.92526881330872	5.27281357493196e-08	2.39970330850436e-06
Merged-chr18-62172902-4	chr18	62172802	62173002	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7079.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	5.94517789523449	5.69824587794831	5.30919956255465	5.42545884116894	5.22988020078657	5.68898681277636	5.2181156144557	5.24025505572979	-0.448508543101789	0.15169007440022	0.435403976358305
Merged-chr17-33919596-4	chr17	33919522	33919722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020625)	TTS (NM_020625)	144.0	NM_009318	21356.0	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	6.72498444721437	7.24011403927651	6.49464047068621	6.66231782892549	7.14874417887745	7.00462166250749	6.44325578721749	7.16249777504515	0.225135634233377	0.389091997132569	0.689374802932542
Merged-chr13-24445415-3	chr13	24445309	24445509	+	815.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111110, intron 11 of 16)	L1MEf|LINE|L1	30287.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	4.00721100251599	3.84398971563165	3.91328784104596	3.88299969085588	3.65630221021051	3.76058075357834	3.74232381845541	4.28883636778704	-0.0754727882199187	0.871888226071937	0.95183223179801
Merged-chr19-15518036-4	chr19	15517939	15518139	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	406583.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	4.67582612072047	4.60991512333687	4.59567317037957	5.16110506285973	4.49726888300426	4.39477804851599	4.73009103724974	4.9533607764842	-0.302690640235698	0.438832954615158	0.726732530107543
Merged-chr13-113418319-4	chr13	113418219	113418419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84525.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	7.75589438353441	8.05079635396476	7.39687047779303	7.39413822418985	7.87285315365169	7.93456258489721	7.73494816639215	7.52052232940519	0.131166390539624	0.544342916214519	0.795184841840149
Merged-chr4-63409493-4	chr4	63409390	63409590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6045.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	6.5233666606718	7.75570331741605	6.73648560989638	6.23549098057265	7.17026835479811	7.15844161223465	6.80249065454638	6.38933367661292	-0.0600661918809493	0.908816179730252	0.966100563913989
Merged-chr8-81342463-4	chr8	81342356	81342556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001297591)	promoter-TSS (NM_001297591)	-106.0	NM_001024617	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	6.63899973361244	6.68153817544351	7.16830203190147	6.92481327041792	5.66143591025667	5.95953585830301	6.49734498131222	6.38876473396419	-1.04040885428452	0.000164724900133241	0.00309283926842098
Merged-chr2-61579581-4	chr2	61579480	61579680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011529, intron 1 of 7)	intron (NM_011529, intron 1 of 7)	994.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	6.73052050906704	6.92229326496289	6.58981172026752	6.82159966402338	7.15819970238288	6.81612311837593	6.88972726466929	6.69675639218899	0.189427505310649	0.375123028387607	0.678186534190177
Merged-chr13-30987899-4	chr13	30987783	30987983	+	971.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13836.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	5.01151488258519	5.61393378175693	5.68694246986758	5.82608343993477	5.06659083361343	5.22963760828897	5.16682761271327	5.25412885944721	-0.728067641162867	0.0227543147555824	0.139370912140745
Merged-chr10-8353715-4	chr10	8353621	8353821	+	842.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 2 of 7)	intron (NM_177387, intron 2 of 7)	165104.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	4.42930785131618	4.76363238115957	4.38495729178274	4.47368258144529	4.55354195780602	4.60393348678779	4.65045372882231	4.63215333052566	0.190499821321165	0.594473749810915	0.823413789941784
Merged-chr13-44415305-4	chr13	44415260	44415460	+	980.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-24367.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	5.67069845734183	5.54348577161931	5.78061379863258	5.54269041599094	5.21825352136471	5.05565416847798	4.89159171932382	4.86972400527892	-1.09440689397151	0.000315123073148337	0.00527519878260242
Merged-chr3-87527307-3	chr3	87527216	87527416	+	873.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_012051, exon 2 of 5)	exon (NM_012051, exon 2 of 5)	1738.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	4.03020166457439	3.9237533883904	3.66352828215134	3.51780947167439	3.79707072941836	3.41217824192681	3.53906180072597	3.4913505606964	-0.663223973172759	0.201682044924683	0.504156139969769
Merged-chr2-172345457-4	chr2	172345355	172345555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025912)	promoter-TSS (NM_025912)	-122.0	NM_025912	67017.0	Mm.30013	NM_025912	ENSMUSG00000027495	Fam210b	2010011I20Rik|AI430961|AV108736	family with sequence similarity 210, member B	protein-coding	9.04977474533801	9.34893022223709	9.19890253657723	9.0403033616978	9.23336760989554	9.31018054598115	9.41983661308009	9.00663728514282	0.106958078940302	0.506584218314722	0.7723270012871
Merged-chr13-39011939-3	chr13	39011837	39012037	+	915.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41B|LTR|ERVL	-51062.0	NM_001170431	108652.0	Mm.255506	NM_134060	ENSMUSG00000021432	Slc35b3	4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2	solute carrier family 35, member B3	protein-coding	3.73546788596731	3.90421973624527	4.41438211840666	3.81270041032179	3.50073767794697	3.6761366982402	3.92515624101999	3.89151645089816	-0.665764608849956	0.181807300457926	0.478446672285694
Merged-chr4-118360572-3	chr4	118360497	118360697	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026601, intron 3 of 8)	intron (NM_026601, intron 3 of 8)	598.0	NR_003946	68180.0	Mm.193212	NM_026601	ENSMUSG00000006395	Hyi	2700033B16Rik|6430559E15Rik|HT036	hydroxypyruvate isomerase (putative)	protein-coding	4.50346149815085	4.61542024514069	4.92960151198122	4.68065773782192	3.76300822745632	3.85679690862756	4.07790108200323	4.24344422972322	-1.74734728496012	4.59091210926146e-05	0.00105039065581845
Merged-chr7-115001310-2	chr7	115001209	115001409	+	789.75	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	50035.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	4.50012905071135	4.1931968508814	4.81499324960501	4.68507781981607	3.94127405207181	4.31585565433729	4.26648490522936	4.45765190866335	-0.756940839618832	0.0698047868945824	0.282790832462691
Merged-chr2-18884520-4	chr2	18884423	18884623	+	875.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355147, intron 3 of 8)	intron (NM_001355147, intron 3 of 8)	-82705.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	3.78941565595168	3.77377759106013	3.73835673571486	3.87504782405626	3.81529951282032	3.62452284715452	3.55728716509958	4.05921844501455	-0.0540301558671115	0.908293342315691	0.966035007914717
Merged-chr9-78427546-4	chr9	78427466	78427666	+	985.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	15671.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	5.56388907603479	4.9988352280364	5.59101282127054	5.74237279572175	5.7005870301526	5.5411777740071	5.42722314621108	5.61265988482056	0.109590226096391	0.719574018352481	0.888022825078143
Merged-chr2-76673126-4	chr2	76673035	76673235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010222)	promoter-TSS (NM_010222)	-37.0	NM_001355080	14231.0	Mm.24720	NM_010222	ENSMUSG00000002732	Fkbp7	23kDa|FKBP-7|FKBP23	FK506 binding protein 7	protein-coding	7.39753618640429	7.57898814637924	7.38848710214391	7.75191066044293	7.78191014981744	7.77516337590764	7.71651316022429	7.66917005700447	0.24385932482496	0.174940922827637	0.469590383048546
Merged-chr8-84893903-4	chr8	84893783	84893983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008097)	promoter-TSS (NM_008097)	38.0	NM_001044744	270076.0	Mm.2475	NM_008097	ENSMUSG00000003809	Gcdh	9030411L18|AI266902|D17825|GCD	glutaryl-Coenzyme A dehydrogenase	protein-coding	7.76688562211886	8.09550735541361	7.72757297933936	7.96563117596021	7.95765182697893	7.85460505233872	8.0080202765784	7.6973141821323	-0.0208954757500659	0.906575831367204	0.965374636270914
Merged-chr7-16782153-3	chr7	16781981	16782181	+	950.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009201, exon 1 of 9)	exon (NM_009201, exon 1 of 9)	735.0	NM_009201	20514.0	Mm.1056	NM_009201	ENSMUSG00000001918	Slc1a5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding	3.74101970275245	3.45127952958723	4.14914422888358	3.85751607613027	3.68354319450503	3.56062971168125	3.72637247691668	4.10716406747932	-0.106478789230283	0.834161414730388	0.93671749817143
Merged-chr8-68880552-4	chr8	68880435	68880635	+	949.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008509)	promoter-TSS (NM_008509)	-20.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	4.61881044250121	4.54680264867125	5.31494355330969	5.40814881065223	4.75915469005747	4.88803320806817	5.23370513328807	5.16981921520671	-0.0370603968526436	0.925475937126611	0.972503515835845
Merged-chr14-65097701-3	chr14	65097611	65097811	+	871.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018788, intron 1 of 6)	CpG	395.0	NM_018788	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	3.50683035348989	3.9750001459122	3.6701516712324	3.46936929658659	3.571827412315	3.50077363179046	3.55003836572953	3.61607575599126	-0.334733909419193	0.505177767374866	0.771317452197078
Merged-chr12-112829556-4	chr12	112829443	112829643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359292)	promoter-TSS (NM_001359292)	-22.0	NM_001359234	71963.0	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	8.64504102356024	8.78598139886861	8.83482064604901	8.64498986697713	8.73139910628846	8.86420120371541	8.78726065451469	8.64989491945143	0.039355911768679	0.78970310556681	0.918573649782491
Merged-chr15-50745538-4	chr15	50745435	50745635	+	828.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	143514.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	4.40738792928437	5.15496523276637	4.31590905751687	4.02701078053646	4.61411045408174	4.96074387659136	4.14680300858806	3.9920392413018	-0.1468967800412	0.77235343549896	0.910853621904009
Merged-chr7-5014792-4	chr7	5014698	5014898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025324)	promoter-TSS (NM_025324)	-70.0	NM_001110328	23877.0	Mm.38911	NM_011813	ENSMUSG00000061374	Fiz1	AI790204|mFLJ00416	Flt3 interacting zinc finger protein 1	protein-coding	7.30058242047384	7.59009121227152	7.48471808733174	7.13576875096999	7.61045981077638	7.85422440101058	7.52977892565002	7.85252372522256	0.444285501869056	0.0230953342493362	0.140745102442937
Merged-chr11-21015107-4	chr11	21015074	21015274	+	991.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76150.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	5.27898482220287	5.40028898292397	5.1854467305025	5.13798687614183	5.50659392598882	5.45329010072239	5.05899385293651	5.14884056751294	0.119582948946053	0.693063912083546	0.875211530726656
Merged-chr7-30417869-6	chr7	30417807	30418007	+	909.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011662)	TTS (NM_011662)	1947.0	NM_011827	23900.0	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	3.77230558052174	3.75701236818137	3.72014675665881	3.29225356290272	3.77439605314602	4.08842368223006	3.85517385646961	3.77063692016366	0.713981171168611	0.142480965339742	0.420100767653266
Merged-chr11-97664251-2	chr11	97664151	97664351	+	975.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_139311, intron 1 of 19)	intron (NM_139311, intron 1 of 19)	839.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	2.9197721140606	2.97562873903789	2.9818372022717	2.54565314113423	2.89904755809423	3.26593293227272	2.63403053771761	3.03901952355406	0.48128929823598	0.473336534145038	0.751122977681633
Merged-chr16-8671702-4	chr16	8671598	8671798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025821, intron 1 of 3)	CpG	455.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	5.39979798699368	5.7324727868454	5.33997899547749	5.2795743024594	5.21287827034955	5.38773604290463	6.02466806945035	5.36697310019737	0.152623079534283	0.639803352556055	0.847739442136773
Merged-chr11-78246194-4	chr11	78246081	78246281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009297)	promoter-TSS (NM_009297)	430.0	NM_001359106	20316.0	Mm.20755	NM_009143	ENSMUSG00000002064	Sdf2	AI853825	stromal cell derived factor 2	protein-coding	6.04382313552446	6.47412107642813	6.1921522547515	5.92141242413446	6.56146073713819	6.30750656574894	6.12032164664028	6.26469428649265	0.251395121321372	0.321779511616224	0.633247915544561
Merged-chr17-83513846-1	chr17	83513746	83513946	+	923.0	f0_balb.idr	intron (NM_009187, intron 1 of 2)	intron (NM_009187, intron 1 of 2)	487.0	NM_009187	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	4.6268607856923	4.39099145439924	4.21299984655142	4.64940617409843	4.45319946618533	4.83874939323285	4.97549905550226	4.77318293497838	0.587645419223872	0.124568513888047	0.391884975827738
Merged-chr9-32502621-3	chr9	32502510	32502710	+	744.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	38842.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	3.47882920465483	3.39728034683313	3.31103987089445	3.60958760884698	3.57510206066531	3.36059373037991	3.17569327328916	3.42379922450404	-0.217967890192317	0.682229185422328	0.869682098720609
Merged-chr19-59071607-4	chr19	59071496	59071696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 1 of 16)	intron (NM_001114312, intron 1 of 16)	4473.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	5.96813081965345	5.78186402205263	5.90452863315771	5.98992822476578	5.52357768454342	5.83772434580209	5.99975039549399	5.48565595546474	-0.318607053443409	0.233387327274165	0.543040635259939
Merged-chr3-32397007-4	chr3	32396929	32397129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-31364.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	8.6231073950121	8.59985490723884	8.72096571967272	8.77354615514464	8.63614867344299	8.71238506518815	8.75890698100117	8.62351169691859	-0.00219023495755904	0.987944955848559	0.995370064932717
Merged-chr10-122534804-5	chr10	122534681	122534881	+	935.711121	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35110.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	4.01032501925345	4.10072956791942	4.06027802827818	4.12062124373003	4.01545655004757	4.08209340992681	4.13542370686505	4.35817132385503	0.185082362065142	0.650095144417298	0.853039400580308
Merged-chr11-107402384-4	chr11	107402292	107402492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	68328.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	5.8189798104803	5.48031412920838	5.86243235665949	5.99322479679702	5.32074910959819	4.87044130038034	5.60552460208718	5.07540819307759	-0.958146704853098	0.00257509898350831	0.0283515809044298
Merged-chr8-11393736-1	chr8	11393636	11393836	+	715.333313	f0_balb.idr	intron (NM_009932, intron 4 of 47)	ID2|SINE|ID	-80910.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	3.46330949662389	3.23223310856531	3.20991190372829	3.41474514983623	2.79314853264688	3.13962447724858	2.813013487648	2.96162095560526	-1.76425271863334	0.00496256565984621	0.0472865409775359
Merged-chr11-110379812-4	chr11	110379700	110379900	+	913.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19302.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	4.01117967809226	3.90286456223068	4.06111684930308	4.11705673650565	4.32450439478766	4.27945480500998	4.09091870452683	4.10617918094813	0.452553132424686	0.266572970775657	0.578223296871566
Merged-chr7-139400488-4	chr7	139400389	139400589	+	941.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355162)	promoter-TSS (NM_001355162)	-5.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	4.27930134939488	4.20351838275707	3.66336456065776	4.01529220049159	4.22141563083375	3.96817876356661	4.21911739912843	4.27721843966266	0.306473030331458	0.483640346911724	0.757942401688951
Merged-chr13-75840974-1	chr13	75840874	75841074	+	752.0	f1_balb.idr	intron (NM_053108, intron 1 of 2)	intron (NM_053108, intron 1 of 2)	1088.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	3.12562701431865	3.36624279641723	3.12603093774788	2.98376827271553	3.2459039948199	3.04678567735664	2.99435149336013	2.86899637565564	-0.401734382957126	0.503642563203972	0.770507049123075
Merged-chr1-88282348-6	chr1	88282191	88282391	+	829.438904	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-4712.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	3.1010018000847	2.8236103208403	2.98546804788665	2.63999054647912	2.62685701221972	2.6706703491545	3.14174348675016	3.30380313339553	0.300004747508291	0.66475197380757	0.861073297406066
Merged-chr19-44069778-4	chr19	44069660	44069860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164359)	promoter-TSS (NM_001164359)	15.0	NM_001164359	226144.0	Mm.279865	NM_145502	ENSMUSG00000025198	Erlin1	2810439N09Rik|C80197|Keo4|Spfh1	ER lipid raft associated 1	protein-coding	5.50292808881168	5.83409791872023	5.44509129980887	5.55883223220084	5.56662921386394	5.62175364878083	5.63685831258265	5.91250844699544	0.153508101482328	0.573413411488929	0.811883219612716
Merged-chr7-110122982-4	chr7	110122872	110123072	+	939.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009516, intron 1 of 10)	CpG	913.0	NM_009516	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	4.69950094656358	3.83040716543681	4.59877837545885	4.23922092252053	4.35897864135972	4.31252865594994	4.21434250980918	4.23030909413032	-0.223552098457595	0.612171712178074	0.832680684364583
Merged-chr6-54952736-4	chr6	54952632	54952832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	18929.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	5.67138772027779	5.57124589200007	5.37080866343573	5.64422732795648	6.28031333463109	5.8497635439416	6.16216113493463	6.17174118187189	0.89226191466586	0.000497123917093506	0.0076773233444996
Merged-chr14-63130012-6	chr14	63129890	63130090	+	803.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	7528.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	4.01683732525211	3.89777647657543	3.86749470793155	3.98025783403066	3.70647346629769	4.14127983229831	3.85181953215965	4.30790992018488	0.195112511068362	0.665570638654535	0.861482624541591
Merged-chr13-17803611-4	chr13	17803501	17803701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081058, exon 1 of 14)	exon (NM_001081058, exon 1 of 14)	1496.0	NM_001081058	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	5.95611820085641	6.05596482463752	5.85926397326397	6.27546891103701	6.33515367394965	6.22457725290921	6.37531610202313	6.3869967946423	0.403615045330292	0.0905138366593089	0.328619700583612
Merged-chr16-38712898-4	chr16	38712780	38712980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_020260, exon 1 of 12)	5' UTR (NM_020260, exon 1 of 12)	155.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	5.82984696465114	6.08678751394946	6.00157833071606	5.64502964892218	6.462602605462	6.36810433679657	6.60038378297892	6.45217755431235	0.900532424688021	0.000151442066692101	0.00287683343076517
Merged-chr3-121891646-3	chr3	121891500	121891700	+	806.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61629.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	3.37267892338937	3.42383562000349	3.43484569559253	3.56514907866835	3.76524644934347	3.60942440527487	3.73796686495119	3.79821169826752	0.847745355001207	0.0784762038722441	0.303220863572603
Merged-chr16-95833510-6	chr16	95833411	95833611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040485, intron 3 of 3)	intron (NR_040485, intron 3 of 3)	65202.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	5.75500005015159	6.04805329122202	6.19393727002733	6.01192041397579	5.68970521772661	6.25220174413003	5.75260414309238	6.15198771441065	-0.0603468432076013	0.822925339121837	0.932185203682946
Merged-chr13-101696063-4	chr13	101695972	101696172	+	885.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-3442.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.80239718429261	4.49094214741644	4.36003073941116	4.37605003704473	4.91595467740528	4.58386712245424	4.59894152471424	4.69367125361639	0.44862496107797	0.219538578920325	0.527157727253308
Merged-chr19-53939551-4	chr19	53939446	53939646	+	846.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195348, intron 2 of 3)	intron (NM_001195348, intron 2 of 3)	-4760.0	NM_001168505	56392.0	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	3.89900959419523	3.75285832464555	4.04994912301957	3.73476436620799	4.51608075092195	3.91057696134323	4.07819005627883	4.2237350463438	0.948913552261781	0.0313658621552856	0.172455489489852
Merged-chr1-157048321-4	chr1	157048196	157048396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60354.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	5.17267146041347	5.30519629831397	5.17353803580702	5.53667843336555	5.88750993045823	5.38636209844451	5.45759683848628	5.79707581273136	0.576910145870847	0.0560725662241587	0.247864446578555
Merged-chr18-36025696-3	chr18	36025601	36025801	+	967.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167891, intron 5 of 9)	L2|LINE|L2	60871.0	NR_110349	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	3.74689369497973	3.87378614106777	3.50755326428189	4.11969380191187	3.79412313216027	3.92103837041809	4.1058613679709	3.90010392722425	0.231864549400186	0.631078083600652	0.843210446625071
Merged-chr7-19590071-4	chr7	19589980	19590180	+	800.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_125836, intron 6 of 17)	intron (NR_125836, intron 6 of 17)	12793.0	NM_022409	63872.0	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	3.67201897351322	3.76267261126029	3.61610235966917	3.53954707434454	3.99024626871685	3.79093276126632	3.76286377115814	3.96478938875882	0.720480298601587	0.1098909449718	0.366109411287047
Merged-chr3-51270165-4	chr3	51270069	51270269	+	903.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 4 of 9)	intron (NM_023502, intron 4 of 9)	-6592.0	NR_073429	67746.0	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	3.88340490054731	3.83679092009819	4.13192591812718	4.11095692387445	4.18242990952515	4.11178652887243	4.31889123776107	4.03596445265902	0.421472345522689	0.314516246252717	0.626465142785405
Merged-chr4-135318190-4	chr4	135318091	135318291	+	926.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35023.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	4.35863956948895	3.97143620823356	4.07896717756848	4.52909560374027	4.45147918872525	4.15006905721193	4.33952830076185	4.51394065647804	0.247231996985166	0.556855518217392	0.802235069284239
Merged-chr10-20770676-4	chr10	20770574	20770774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-E-int|LTR|ERVL	-45596.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	6.58589899483237	6.18361883683661	6.31307858321645	6.60951732014009	6.75389229666962	6.41159697332648	6.53801083597419	6.36465001099624	0.133626401320349	0.570220596278733	0.809916884259967
Merged-chr10-44607472-4	chr10	44607372	44607572	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148724.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	5.42479957994439	5.44382397747873	4.76611347903099	5.41168750604104	5.27477799959401	5.51460917817734	5.09560682145201	5.27859452679155	-0.00548279686063118	0.986507738754945	0.995035133512424
Merged-chr10-75229227-4	chr10	75229135	75229335	+	899.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145826, intron 3 of 18)	URR1A|DNA|hAT-Charlie	16845.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	4.20377820178558	4.0817391869936	4.50417029764542	4.73457820580205	4.26514066374318	4.22953079118204	4.40513900169518	4.29480325323324	-0.297341662109052	0.47614897067497	0.752752032426828
Merged-chr10-127479989-4	chr10	127479864	127480064	+	898.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359246, intron 13 of 23)	intron (NM_001359246, intron 13 of 23)	-21722.0	NM_001359751	237611.0	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	4.21355992871047	3.91938315503636	3.84831775323615	3.71989594410592	4.24365271776347	4.02230515841767	3.72380192639557	3.84614211079771	0.150890586466896	0.74603966351943	0.899902679415844
Merged-chr10-122535334-4	chr10	122535233	122535433	+	979.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34558.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	4.84612074975842	4.92097508795181	4.84691136448711	5.50581603356057	4.85112945382882	4.62521324896961	5.10129534846533	5.47592930442183	-0.0558833045303141	0.886137742148532	0.957247996194402
Merged-chr1-16797974-4	chr1	16797827	16798027	+	901.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109471.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	4.43622149441098	4.17346042912141	4.59404944861225	4.58149989271402	4.42191423107236	4.28405826870349	4.5351887228497	4.39163815957138	-0.116782852765839	0.759626453565411	0.905741537670396
Merged-chr2-174674180-4	chr2	174674081	174674281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099328, intron 3 of 4)	intron (NM_001099328, intron 3 of 4)	30647.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	5.11061779671666	5.22973930969616	4.85175390195956	5.22715021030352	5.09930467763269	5.38156663830886	5.27222941685156	5.32356156819397	0.258469383323638	0.397053401172259	0.695573922424755
Merged-chr8-126665932-4	chr8	126665797	126665997	+	960.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72461.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	4.90123857647889	4.74267878986024	5.03130970390934	4.92402898205428	4.30995439818925	4.72982161994691	4.57488169110618	5.02781259638604	-0.471970188761085	0.19858456834429	0.500125640950295
Merged-chr10-10321341-4	chr10	10321231	10321431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150983.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	7.56828136632341	7.89428277376966	7.31892342796881	7.66701264293958	7.49502024973456	7.40827873283348	7.50590083625436	7.02757596497769	-0.340509284174486	0.102717537210071	0.352030987581283
Merged-chr8-106138270-4	chr8	106138168	106138368	+	885.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040344, exon 5 of 5)	non-coding (NR_040344, exon 5 of 5)	-1294.0	NM_176838	77411.0	Mm.183003	NM_176838	ENSMUSG00000084128	Esrp2	9530027K23Rik|Rbm35b	epithelial splicing regulatory protein 2	protein-coding	4.20915902519493	4.14824175037417	4.20980945832452	4.07840555587239	4.12364233409435	4.14626312571613	4.1473095745402	3.96959413769256	-0.144433937431114	0.719678298204235	0.888022825078143
Merged-chr5-64370471-4	chr5	64370388	64370588	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	97454.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	4.98093877301775	5.05007955951208	4.94579797834097	5.19275269445001	5.07777372655089	5.00807379384604	5.0592186047395	5.20489029497093	0.0556526969889142	0.85614842794673	0.945844091213898
Merged-chr6-47943183-4	chr6	47943084	47943284	+	980.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027963)	promoter-TSS (NR_027963)	9.0	NR_027963	232785.0	Mm.482185	NR_027963	ENSMUSG00000072653	Zfp783	A230106D06Rik|Gm20494	zinc finger protein 783	ncRNA	5.65557239717165	5.41344604095664	5.38535907406048	5.61584823297345	5.36500591180275	5.46843492675369	5.90849685012005	5.18628914909828	-0.0336308022070224	0.911412420592952	0.96695373445261
Merged-chr16-5049974-4	chr16	5049869	5050069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356320)	promoter-TSS (NM_001356320)	-59.0	NM_028720	74022.0	Mm.21652	NM_028720	ENSMUSG00000022536	Glyr1	2810419J22Rik|3930401K13Rik|AW545332|Npac	glyoxylate reductase 1 homolog (Arabidopsis)	protein-coding	8.54750374628563	8.61563824429584	8.29327363577785	8.28582447988469	8.52093131733764	8.6687953974954	8.57370367385887	8.47055210733931	0.149630346535433	0.356149979381783	0.662704502355483
Merged-chr13-24103341-4	chr13	24103239	24103439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026825, intron 17 of 37)	intron (NM_026825, intron 17 of 37)	-112125.0	NM_145399	214189.0	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	6.22665146468457	6.61897195772899	6.43783140191333	5.68421240064288	6.19817082416138	6.45898595495612	6.01243683383694	5.74302527313588	-0.227267129421246	0.457298775182914	0.740413755487572
Merged-chr12-80229136-4	chr12	80229003	80229203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	31268.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	5.61225799904305	5.56745717175007	5.61323476217347	5.59445994850839	5.4820133808321	5.41045855386687	5.42459874031616	5.41891294662238	-0.275151273171625	0.298000901035438	0.61017191079025
Merged-chr18-9450175-4	chr18	9450083	9450283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026484)	promoter-TSS (NM_026484)	-29.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	8.7125290320264	8.90747147207413	8.82691628182194	8.93279070281263	8.89122595173661	9.1873155713402	9.06845198970031	8.6637890537825	0.143844090052238	0.391067029183225	0.690939565734194
Merged-chr8-123860084-3	chr8	123860024	123860224	+	971.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028536)	promoter-TSS (NM_028536)	85.0	NM_028536	73420.0	Mm.157746	NM_028536	ENSMUSG00000031971	Ccsap	1700054N08Rik|AI853424	centriole, cilia and spindle associated protein	protein-coding	3.72669546555325	3.62932334759514	4.11860711574986	3.87325802677401	3.56508033447726	3.42479230193211	3.55102725211185	3.6189790195247	-0.952572585880194	0.0539340539765648	0.242435871676533
Merged-chr9-106858225-4	chr9	106858120	106858320	+	949.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001015507, exon 14 of 23)	exon (NM_001015507, exon 14 of 23)	28780.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	4.35142426717611	4.42404622488901	4.5819511674358	4.92640113422191	4.57110555609652	4.32288822542795	4.98327901854674	5.27439084597865	0.48551686069512	0.254654231611376	0.566102425180865
Merged-chr13-5988645-4	chr13	5988541	5988741	+	933.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	127152.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	4.46931899628582	4.0046263096985	4.11936501245106	4.19597831969539	4.48053145508249	4.38980531752252	4.48629111901991	4.11695825343686	0.423677183552932	0.291396564875342	0.60371229002408
Merged-chr8-125462410-3	chr8	125462304	125462504	+	898.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 10 of 21)	intron (NM_001357372, intron 10 of 21)	30429.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	2.87063801094606	2.97062042307128	2.79592150505024	2.748254392367	3.51108116377427	3.25046407310456	3.56979735730819	3.13440896799794	2.17649570600745	0.000206579446435198	0.0037377016822092
Merged-chr10-75317251-6	chr10	75317344	75317544	+	930.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331095)	promoter-TSS (NM_001331095)	-156.0	NM_001331095	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	3.05366630446981	3.36643886933191	3.46309197399645	2.89722857666438	3.10901931497138	3.3595498937738	3.34479908397789	3.40991554673309	0.368117181394494	0.527446561871177	0.784362457088697
Merged-chr1-64530874-6	chr1	64530746	64530946	+	899.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1958.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	3.64563417545039	3.67331112456738	4.01786983197456	3.41056006123608	4.16414473265178	4.23366691510803	4.12993164533814	3.91955680469175	1.20650965904256	0.00903985500600784	0.0733555431558122
Merged-chr14-25749384-3	chr14	25749287	25749487	+	923.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	19469.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	4.01671491171601	4.51326818132596	4.11143346103745	3.9443538225203	4.24712324251822	3.92706380787008	3.7912760363908	3.80373965884695	-0.515580151814357	0.271631077434507	0.583248718877048
Merged-chr10-121587609-4	chr10	121587504	121587704	+	970.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019786)	promoter-TSS (NM_019786)	-810.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	5.27464385710325	5.52383040317463	4.79510874707525	4.59319788966279	5.31339143750817	5.09143634599373	5.13012327558486	4.9109268605756	0.0591285041334288	0.874754914859408	0.952925927223413
Merged-chr5-5380354-7	chr5	5380338	5380538	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011074)	promoter-TSS (NM_011074)	-187.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	5.38588655168169	4.71923397097857	5.27321058236828	5.30404433031631	5.06940406710548	5.29000818398605	5.21714045818001	5.29889271840199	0.0340442066194682	0.916044096118257	0.968912323381988
Merged-chr13-91702519-4	chr13	91702421	91702621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015501, exon 2 of 2)	non-coding (NR_015501, exon 2 of 2)	-39000.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	7.57154125971674	7.52873853844758	7.96465383917765	8.12207764879921	7.42759614573203	7.28759932445451	8.03337779331217	7.46425380084216	-0.315785315835308	0.181734322768928	0.478390065102424
Merged-chr9-65681108-4	chr9	65680993	65681193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301307, intron 1 of 4)	intron (NM_001301307, intron 1 of 4)	4545.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	6.38463826188453	6.45003024233501	6.11691637868836	6.26165440212643	5.73082885495721	5.90011650314722	5.48718908211567	5.91851529458677	-0.853076318633147	0.000681131700688566	0.00990040296575687
Merged-chr2-68349751-4	chr2	68349659	68349859	+	772.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 10 of 17)	intron (NM_016866, intron 10 of 17)	122222.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	3.48129336003696	3.76814129388255	3.92401516468923	3.91071187204005	4.05451298032986	3.89440116922596	3.70699629974022	3.92164353709543	0.324226755442185	0.488506855226862	0.761344727658502
Merged-chr12-112693635-4	chr12	112693519	112693719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	14779.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	8.15886810599933	8.11882728515456	7.91680433111525	7.9844798179339	8.01564210385476	8.17159619768727	7.94229817183586	7.92591648043538	-0.0386577084786304	0.813325886774545	0.927857767644014
Merged-chr5-123848274-4	chr5	123848072	123848272	+	876.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17344.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	3.71426384907121	3.77380987712909	3.82709106883718	3.42492065594142	4.40790366795145	4.10445379060981	3.81133817034786	4.23605080042355	1.35112248536123	0.00335787717658972	0.0348767458853757
Merged-chr11-118457159-4	chr11	118457070	118457270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-2175.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	8.46326527494408	8.53899934940887	8.4028670804597	8.34059042248019	8.63226969664935	8.58052975697019	8.3585875444532	8.41832509686577	0.0875340444249304	0.5749265835868	0.812651653059651
Merged-chr8-84709305-4	chr8	84709172	84709372	+	969.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 9 of 9)	intron (NM_001081982, intron 9 of 9)	7815.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	4.37028419985648	4.99095081390155	4.62330267212743	4.65348102618735	4.50188574045466	4.18500321055	4.67490469067831	4.32106094294217	-0.540507633947354	0.170669376270734	0.463886709030905
Merged-chr10-128705078-4	chr10	128704971	128705171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016756)	promoter-TSS (NM_016756)	-20.0	NM_016756	12566.0	Mm.111326	NM_016756	ENSMUSG00000025358	Cdk2	A630093N05Rik	cyclin-dependent kinase 2	protein-coding	7.26738855231997	7.38710812648694	6.801270049368	7.19747219859207	7.31936969095658	7.24005512034361	7.35246614926456	7.17626545369344	0.122349711658607	0.54272548376352	0.793917205662524
Merged-chr9-57073601-4	chr9	57073503	57073703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110351, intron 1 of 21)	intron (NM_001110351, intron 1 of 21)	1563.0	NM_001110351	20466.0	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	8.75515201911773	8.82729276047522	8.73567891692504	8.55826059888958	8.72748526150013	8.97527599185769	8.64901940497678	8.62952566023723	0.0405700177143777	0.799663140356518	0.922650348793772
Merged-chr10-18235185-4	chr10	18235066	18235266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144820)	promoter-TSS (NM_144820)	-185.0	NM_144820	215814.0	Mm.296565	NM_144820	ENSMUSG00000059554	Ccdc28a	1700009P13Rik|AI480677	coiled-coil domain containing 28A	protein-coding	7.4852069044722	7.42658616262756	7.99579553455355	7.60450760479559	7.11056948824726	7.44974721296875	7.57406655351457	7.4718952543404	-0.316365288736528	0.132942635152166	0.406097877964367
Merged-chr5-148548175-4	chr5	148548047	148548247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	3526.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	6.49658235492736	6.31653663438707	5.72119410465155	5.8952077712685	6.32554038027303	6.35463559618904	6.67873842511918	6.23281724178284	0.409547148419483	0.132494588460241	0.405392244772508
Merged-chr10-119066153-3	chr10	119066057	119066257	+	833.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15658.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	3.85535697021607	3.75152557752117	3.67762712707755	3.18424565620093	3.86956620746976	4.33038470431279	4.82919992016182	4.19581826780653	1.92513290013836	0.000175213339844048	0.00325711943503774
Merged-chr4-101069027-4	chr4	101068950	101069150	+	979.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183024)	promoter-TSS (NM_183024)	12.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	4.68415061962433	4.73061984453645	4.79343951862008	4.59874419699162	4.63698448492109	4.51785454256095	4.66295536761789	4.56303789582861	-0.208456104681344	0.544972889029697	0.795639850437806
Merged-chr3-36151352-2	chr3	36151252	36151452	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101478, intron 1 of 3)	CpG	272.0	NM_001101478	241944.0	Mm.260056	NM_001101478	ENSMUSG00000033883	D3Ertd254e	-	DNA segment, Chr 3, ERATO Doi 254, expressed	protein-coding	4.65056085578563	4.82759639702009	4.72924064540037	4.81466483491195	4.73269647273932	4.56363753417777	4.81464097460551	4.68781956711867	-0.122380258727845	0.716008413348145	0.886371813543908
Merged-chr10-122544408-4	chr10	122544212	122544412	+	861.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25579.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	3.59724117462282	3.66182441784173	3.59771312407499	4.00529190988583	3.27716764763037	3.82984973079959	3.74640481714929	4.19126369748125	0.188566009356425	0.729997759038626	0.892868983428307
Merged-chr15-64003333-4	chr15	64003223	64003423	+	955.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	GA-rich|Low_complexity|Low_complexity	-5257.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	5.20256844900604	4.6527961850941	5.04506326519588	5.3498147729513	5.27423711744415	4.83490669071178	4.84125237117512	5.22923235807041	-0.0563081858808237	0.873928344060341	0.952744110383191
Merged-chr5-62889519-1	chr5	62889419	62889619	+	774.666687	f0_balb.idr	Intergenic	Intergenic	75696.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	4.0118772409036	3.71735819516731	4.41393693412713	3.96698965721699	4.09472870565996	4.03701609444217	3.55432371684358	3.91191496340461	-0.342663324311027	0.481715304961124	0.756755039529514
Merged-chr11-87109002-4	chr11	87108856	87109056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175563)	promoter-TSS (NM_175563)	-242.0	NM_175563	270906.0	Mm.132381	NM_175563	ENSMUSG00000020493	Prr11	B930067F20Rik	proline rich 11	protein-coding	8.45551044952035	8.75319792207989	8.30280291977332	8.31519381718322	8.74768996373519	8.93691545425989	8.72710941563883	8.74506322640472	0.404481559345674	0.0170751171752397	0.1149141612138
Merged-chr5-140620225-2	chr5	140620125	140620325	+	814.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175274)	TTS (NM_175274)	12884.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	3.00346019433643	3.04321366506178	2.94359005982005	2.72866601851356	2.88751197883217	2.92176614234914	2.80540992400597	3.16736944920566	0.10296499483157	0.866774634286973	0.950077792570028
Merged-chr4-132963681-4	chr4	132963596	132963796	+	961.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10399.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	5.14826980544037	5.48773375756256	5.14915633611862	4.62656537768071	5.06652619304021	5.08945355992987	4.89002350234304	4.57589095081261	-0.398501541657553	0.289329936786653	0.601308522016326
Merged-chr5-105701099-2	chr5	105700999	105701199	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	289.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	3.75778351560063	3.87138900951007	3.85997519496781	3.81971755889695	3.57834246374888	4.02948789682619	3.74319882020611	3.80794041819539	-0.108901941235198	0.811710720844059	0.927202084383877
Merged-chr8-35808363-4	chr8	35808281	35808481	+	796.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	18178.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	3.78734509606374	3.95318783984865	3.84233740734132	3.84462816374074	3.58317564227897	4.1648015879705	3.97586536063609	4.3226811104642	0.475956516242854	0.310071347317036	0.622199763486801
Merged-chr9-32672563-4	chr9	32672466	32672666	+	972.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23476.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	5.6526849708696	5.3389773121138	5.74533656286961	6.22432343399276	5.07249324837711	5.03993787165169	4.87454344930654	5.09195135614751	-1.38132809186728	3.39510285490275e-05	0.000806878217392732
Merged-chr12-73678243-3	chr12	73678181	73678381	+	670.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	93485.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	3.27124737511408	3.28167511246709	2.97018670719503	2.84275952121966	3.22227227294374	3.21048052456386	3.20402731472032	3.09768258664183	0.347069982590169	0.551216008726313	0.798837168776829
Merged-chr4-117787172-3	chr4	117787096	117787296	+	893.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21530.0	NM_029416	75753.0	Mm.3848	NM_029416	ENSMUSG00000048626	Klf17	7420700M05Rik|AA420409|AU043468|C85123|D4Ertd561e|Gzf|Zfp393	Kruppel-like factor 17	protein-coding	3.98694804110884	4.1083137558356	3.84539505918975	4.1390105916169	3.64593830046108	3.85894486040086	3.72676913789374	3.56756783077984	-0.992938654857719	0.0308591180276657	0.170471180604674
Merged-chr10-42225302-4	chr10	42225192	42225392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	51450.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	6.92570148134909	6.54071378038763	6.74303012137641	6.91631270254066	6.13352230476265	6.59993527196093	6.37116423879525	6.82032381770226	-0.428792920729778	0.0778652994066656	0.3017243261183
Merged-chr1-125560949-4	chr1	125560845	125561045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028787)	promoter-TSS (NM_028787)	-57.0	NM_028787	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	8.4431925979786	8.46469293196555	8.43417879077821	8.45562499386529	8.49988532809996	8.61195800108333	8.82180825404145	8.58956822035434	0.231676446514605	0.126963401408765	0.396406523808084
Merged-chr2-52072801-4	chr2	52072711	52072911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175238)	promoter-TSS (NM_175238)	-26.0	NM_001355415	51869.0	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	6.88918661964321	6.77063343922223	6.91725384721884	7.27678202808113	7.00027744245396	6.83002355903178	7.22695847312698	6.91235960424054	0.0128024709967405	0.953383359256886	0.983409686773593
Merged-chr18-24470863-4	chr18	24470787	24470987	+	933.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026529)	promoter-TSS (NM_026529)	16.0	NM_026529	68046.0	Mm.276574	NM_026529	ENSMUSG00000024273	2700062C07Rik	AI195775|C87515	RIKEN cDNA 2700062C07 gene	protein-coding	4.39016748084866	4.79974052569511	4.78806712961884	4.26659435951193	4.45562732222872	4.56766644217451	4.58328301591953	4.75027639026835	0.0428837936370712	0.911103361411774	0.966904162861598
Merged-chr14-30876227-4	chr14	30876137	30876337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028839, exon 8 of 8)	3' UTR (NM_028839, exon 8 of 8)	-3020.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	5.91733995069739	5.65900713126794	6.06712246317136	6.51115114382554	5.59533267501034	5.51040546652104	6.13176835246297	5.820643513634	-0.490298449852896	0.114070678133485	0.373582258160641
Merged-chr13-9783906-4	chr13	9783806	9784006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18585.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	6.54206076486103	6.72881766698416	6.7215889603315	6.67556189943862	6.45044682562913	6.21886985791147	6.2452274532603	6.25296749173695	-0.537250792162649	0.0123147237866925	0.0915265453078194
Merged-chr10-96163495-4	chr10	96163390	96163590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62717.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	5.7137816991279	6.0496165867827	5.7671333836326	5.89142409734014	5.73969289009172	5.94402627469426	6.18386322840142	6.26401136715171	0.275345806787231	0.29453506241478	0.606705576837552
Merged-chr1-162207413-4	chr1	162207339	162207539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038619, intron 14 of 20)	intron (NM_001038619, intron 14 of 20)	-10184.0	NR_002870	474332.0	Mm.479755	NR_002870	ENSMUSG00000078190	Dnm3os	6030416H16Rik|Hag2|Npn1|P/L01	dynamin 3, opposite strand	ncRNA	5.72215094067017	5.84857244974621	5.79547805571886	6.1465115856305	5.27172636457034	5.79566742265764	5.4200850271132	5.69405762436197	-0.589801063952985	0.0388224965456878	0.197941898662987
Merged-chr2-132008273-4	chr2	132008165	132008365	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 3 of 10)	intron (NM_175445, intron 3 of 10)	21723.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	5.23040759540957	4.96097636545021	5.25901818389899	5.23771616179636	4.32148117496657	4.8145085560296	5.02591191611045	4.63130342980659	-0.937739000026698	0.00850486598688256	0.0701290649866224
Merged-chr4-141723467-4	chr4	141723379	141723579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001017966)	promoter-TSS (NM_001017966)	-60.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	7.03833120686447	7.1807295005671	6.60951968986115	6.62214623588188	7.30086847913484	7.35368536382934	6.94201813962979	6.99764616176342	0.389859318812194	0.091925480781497	0.3316184580886
Merged-chr10-39261339-4	chr10	39261246	39261446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97552.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	7.21909442334957	7.25851072006711	7.46903125014231	7.53661634998007	7.1310839353767	7.00063071156702	7.28932633482134	6.99975832111827	-0.369731544364355	0.0561033643429713	0.247943708591106
Merged-chr16-10785150-4	chr16	10785074	10785274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271603, intron 1 of 1)	CpG	362.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	6.83678966920601	7.07160039254491	6.62411087935642	6.67849686208458	7.17949866016466	6.85091953576522	7.10074686966819	7.18574707342672	0.388917020112901	0.0638847411217514	0.268496220377016
Merged-chr5-97320302-4	chr5	97320202	97320402	+	870.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	72028.0	NM_001033191	97243.0	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	3.9975758966028	4.22070121115314	4.68029538381724	4.6991372762202	4.49385730591775	4.12482824889497	4.34124610807984	5.01458510034191	0.217139739009969	0.637970095894914	0.847040716325261
Merged-chr13-55209024-2	chr13	55208924	55209124	+	916.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008739)	promoter-TSS (NM_008739)	-758.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	3.21508234516731	3.24873569886265	3.02820230283765	2.99625355928144	3.08489509871287	3.54308515337589	3.14451980570604	3.42773060926112	0.719088990060238	0.204237509384322	0.507425868749117
Merged-chr18-36471125-4	chr18	36471059	36471259	+	977.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-16664.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	4.5586583433618	5.44928772680297	4.85623004292005	4.87928707692518	5.04837483939046	5.20581625097882	4.79502469812504	4.92665667141583	0.0427963803017777	0.907304340784201	0.965654111556545
Merged-chr10-96080715-3	chr10	96080633	96080833	+	800.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140070.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	3.07159291199017	3.29525389413577	3.29601968083492	3.02770262191551	2.93609377647281	3.11879231132293	2.99932227618058	3.07044511334531	-0.587503515180416	0.310725768384736	0.622825306745998
Merged-chr8-13674475-4	chr8	13674377	13674577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	3110.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	6.55062296790038	6.82451402147015	6.94209238787104	7.0737186250547	6.49916430368591	6.6054584353726	6.94350072874921	6.6448532826021	-0.274656194108622	0.225357716786927	0.533730515844036
Merged-chr1-53816618-4	chr1	53816527	53816727	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 28 of 28)	MTE2b|LTR|ERVL-MaLR	-31412.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	5.33316888666403	4.80118857455527	5.24949140365974	5.6332932715271	4.98787547776826	4.75846497243676	4.73512598390385	5.18613296883887	-0.699583075326638	0.0512749195265906	0.235070043603194
Merged-chr10-62488476-4	chr10	62488372	62488572	+	818.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1667.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	4.13485992198658	4.11173548976397	3.78607972320409	3.86285052067738	4.03230960448599	4.16867883324283	4.11692171115585	3.89365156030146	0.212720874365658	0.619608372568892	0.836720209857499
Merged-chr1-173962858-2	chr1	173962783	173962983	+	721.333374	f0_balb.idr|f1_balb.idr	intron (NM_008327, intron 6 of 6)	intron (NM_008327, intron 6 of 6)	19961.0	NM_008327	26388.0	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	3.31285184036565	3.25485429150225	3.04374260327623	3.58360412822336	2.49190509762865	2.7333923501101	2.69752557156053	2.77815737106857	-3.66395870870485	2.58057876979633e-05	0.000637124579449646
Merged-chr11-115188825-4	chr11	115188725	115188925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 2 of 9)	intron (NM_001033393, intron 2 of 9)	1338.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	7.6669842735373	7.67503235776092	7.84145066822356	7.78441710696899	7.83614604337466	7.81133584656867	7.60542759789062	7.72076887468779	0.00456447701639178	0.978201770174726	0.992253549176538
Merged-chr3-87364815-4	chr3	87364710	87364910	+	856.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 2 of 5)	intron (NM_009690, intron 2 of 5)	6929.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	4.01516661301367	3.95406006250216	4.56829160733115	3.93884272208882	4.23414712873362	4.02963213597851	4.2808293826811	4.59901805010699	0.407948916692505	0.358394235575793	0.664380976348606
Merged-chr7-100121556-4	chr7	100121442	100121642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133692)	promoter-TSS (NM_133692)	-42.0	NM_133692	67967.0	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	7.73758177321484	7.9022953878372	7.08962425024004	7.35063102445805	7.93309834021374	7.59876485467627	7.60420255448961	7.59359788595169	0.182069926439122	0.421025590244326	0.713655443512669
Merged-chr8-111876787-4	chr8	111876646	111876846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025781)	promoter-TSS (NM_025781)	-71.0	NM_025781	66817.0	Mm.345350	NM_025781	ENSMUSG00000031953	Tmem170	9030409E16Rik|AA403674|D8Bwg1414e|Tmem170a	transmembrane protein 170	protein-coding	8.25297041323552	8.34501995534625	8.33364687970032	8.4961363878107	8.31803484276771	8.35950189860208	8.50592610327588	8.35537735388447	0.0241765238696912	0.875729434988376	0.953330969687813
Merged-chr5-53594161-4	chr5	53594055	53594255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359152, intron 1 of 9)	intron (NM_001359152, intron 1 of 9)	3669.0	NM_001080927	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	6.58549300958234	6.65962176132429	6.36331588372685	6.3417993675707	6.79947019125251	6.55898288460623	6.61418245479828	6.58195543238044	0.236141947884454	0.275494724989759	0.587319966156884
Merged-chr2-59438597-4	chr2	59438501	59438701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46052.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	6.25802280862479	6.53870141273631	6.19658941228066	6.34699332723833	6.7706215013528	6.80300462310168	6.8397303184083	6.60725867333721	0.597422251979196	0.00500871818125336	0.0476179446271448
Merged-chr5-66138242-3	chr5	66138146	66138346	+	690.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	12732.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	3.29639095326487	2.88193607268927	3.17051082892004	2.85104237628333	3.75153731234052	3.3515014521174	3.59949067122762	3.66021207546969	2.03800390947887	0.000306095878287617	0.00515927031035621
Merged-chr6-97807472-2	chr6	97807372	97807572	+	934.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	414.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	3.0774601757802	3.28990820475839	3.19348997960151	2.41139825634763	3.3883932821122	2.99474782438112	2.87389334963516	3.01447171690054	0.12575555982423	0.865960637829979	0.949769934673472
Merged-chr11-63052996-4	chr11	63052884	63053084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8675.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	5.45761661711727	5.94288003744748	5.87199315151648	5.41227915868087	6.95669256101762	6.42049818944236	6.70355931855305	6.52560302025758	1.51826336997458	7.86121647340859e-09	4.24547441093133e-07
Merged-chr5-112195946-2	chr5	112195846	112196046	+	765.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-10817.0	NR_045377	75569.0	Mm.243721	NR_045377	ENSMUSG00000101683	1700028D13Rik	-	RIKEN cDNA 1700028D13 gene	ncRNA	2.97593464426207	2.76896805711277	2.9105089951392	3.1093192163941	3.10595155374236	3.14878642994747	3.14337249445634	3.31115611110821	0.8779958188664	0.139399878348601	0.415146612711589
Merged-chr8-79058711-4	chr8	79058611	79058811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 1 of 14)	intron (NM_001294279, intron 1 of 14)	30274.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	5.71210419687478	5.28879798029432	5.55744187092566	6.027800034273	4.78159652029382	4.2405353553944	4.86275095573665	4.41159314821536	-2.06516520296837	9.25769202047899e-08	3.99123719155466e-06
Merged-chr10-44070828-4	chr10	44070722	44070922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65976.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	5.47630782818921	5.59955880888148	5.14278044526551	5.42475393737288	6.03785480719879	5.84326372173948	5.848353957026	5.76214936623556	0.764391529088698	0.00440698115791361	0.0432489331089388
Merged-chr12-3903643-3	chr12	3903543	3903743	+	843.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 14 of 17)	intron (NM_153743, intron 14 of 17)	11899.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	3.63435869357473	3.29686396121088	3.6348643373331	3.96124220885032	3.49800376127764	3.6976847273857	3.45253034053732	3.87359573288327	-0.0841913332341706	0.874455618090854	0.95290614430853
Merged-chr2-32606980-4	chr2	32606866	32607066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110347)	promoter-TSS (NR_110347)	-19.0	NM_001289547	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	6.0271327503407	6.50488779241891	5.66159034467772	5.79313892390535	6.43531999485848	6.37542891516576	6.65360024218664	6.58493523575375	0.722778322723032	0.00775056744567493	0.0656680919194972
Merged-chr17-45581549-5	chr17	45581505	45581705	+	834.676208	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8344.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	4.0470675524536	3.95566301093595	3.69624039179426	3.62117644506438	4.04314265059227	3.75605165010468	3.79137163585875	4.12986152011378	0.31675296859122	0.493639947590828	0.764425058839716
Merged-chr4-133139173-3	chr4	133139081	133139281	+	734.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	8548.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	3.61112847100888	3.71700416340427	3.61164712823177	3.48938546293611	3.29874288028191	3.37538742558836	3.54528119973694	3.55759744860666	-0.53695671406523	0.28559091746149	0.597322399917471
Merged-chr1-165606251-3	chr1	165606138	165606338	+	891.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 2 of 5)	intron (NM_001083897, intron 2 of 5)	28303.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	3.34813397787083	3.2398033387393	3.5701473777047	4.01585888162131	3.68463146897803	3.33359622064573	3.21187039611321	3.34689106605359	-0.584756475190755	0.32844687398644	0.639928832657619
Merged-chr12-73304873-4	chr12	73304784	73304984	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 3 of 15)	intron (NM_001037717, intron 3 of 15)	18036.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	4.95064917697975	5.45785259014062	5.46731309337833	5.43036402452849	5.43681713646449	5.16926203025502	5.49128221742494	5.0618732979008	-0.0748444317866601	0.810703544747362	0.926854276252049
Merged-chr17-17634256-4	chr17	17634149	17634349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9760.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	7.1142972284026	7.22361484052476	6.78331408999088	7.29626582405593	7.71557517848303	7.32911001227678	7.50708170226766	7.59815623555399	0.56306199092688	0.0056344161669618	0.0519026929401028
Merged-chr3-100430518-4	chr3	100430394	100430594	+	899.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040543, intron 2 of 2)	intron (NR_040543, intron 2 of 2)	4089.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	3.44469256513529	3.73286569701405	4.24317575847104	4.30523074876224	4.17164082753794	4.10240288492905	3.96228549285061	3.92709991396999	0.149971903223078	0.771492589402471	0.910379161490028
Merged-chr1-52655369-4	chr1	52655275	52655475	+	950.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133829)	TTS (NM_133829)	24670.0	NM_001142647	227094.0	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	4.89163457189219	4.73402575623267	5.10986300253186	5.04479429223736	4.78640870276468	4.31782441145825	4.72646488915173	4.49518681243561	-0.729717555005946	0.0435981033314441	0.212509032187144
Merged-chr10-80561539-7	chr10	80561462	80561662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025852)	promoter-TSS (NM_025852)	-2.0	NM_025852	66932.0	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	5.17896701111717	5.11417538529146	5.00390060707783	5.0614820268883	5.145857681887	5.5643995070391	5.24865236237062	5.7682004441343	0.648923312918899	0.037197078599433	0.192360567976536
Merged-chr11-77513329-4	chr11	77513212	77513412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024920)	promoter-TSS (NM_001024920)	-39.0	NM_001024920	216964.0	Mm.341211	NM_001024920	ENSMUSG00000044328	Trp53i13	2410019G02Rik|Tp53i13	transformation related protein 53 inducible protein 13	protein-coding	6.67838893678032	6.70133427566663	6.31215407243555	6.49243613145852	6.676436728346	6.50846208595064	6.55588802819465	6.26831862123805	-0.0524102812795115	0.816260760413354	0.929287083544371
Merged-chr15-98992701-4	chr15	98992606	98992806	+	987.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6741.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	5.65558601472547	5.49750035739991	4.93326407979672	5.29618424529587	5.84281279134207	5.44299277975859	5.62774614359065	5.26239048982898	0.35115317120213	0.269984458209649	0.581767511754897
Merged-chr14-79426488-4	chr14	79426390	79426590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024135)	promoter-TSS (NM_001024135)	-21.0	NM_001024135	211255.0	Mm.284526	NM_001024135	ENSMUSG00000043881	Kbtbd7	1110008P08Rik|AU045792|Gm295	kelch repeat and BTB (POZ) domain containing 7	protein-coding	8.61084843045718	8.7242728551116	8.60301250992141	8.85153855122648	8.51619586176157	8.54232574153837	8.81322183803135	8.49161071444651	-0.138013864792241	0.389684527157185	0.689983954192071
Merged-chr16-20426420-4	chr16	20426321	20426521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013790)	promoter-TSS (NM_013790)	-27.0	NM_176839	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	6.30638504313214	6.4516536275603	6.13282735567572	6.29766571255321	6.01778582238243	6.4272566303451	6.20094953892958	6.0861559824442	-0.18421409432481	0.432817158600652	0.722637749390969
Merged-chr13-56279618-2	chr13	56279518	56279718	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16933.0	NM_019568	57266.0	Mm.30211	NM_019568	ENSMUSG00000021508	Cxcl14	1110031L23Rik|1200006I23Rik|AI414372|BMAC|BRAK|KS1|Kec|MIP-2g|MIP2gamma|NJAC|Scyb14|bolekine	chemokine (C-X-C motif) ligand 14	protein-coding	3.88593487047242	3.59884029740031	3.29895086257447	3.24872506369152	3.80929428861865	3.48015341062413	3.78070330971878	3.54236749275229	0.439387394760351	0.409665839362637	0.70522406839492
Merged-chr19-4396544-4	chr19	4396461	4396661	+	999.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001001984, exon 1 of 21)	5' UTR (NM_001001984, exon 1 of 21)	516.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	5.03000976662419	5.09625962787544	5.2271835638642	5.06834904475545	5.18211878145821	5.30594413728667	5.10770689346492	5.28267516533508	0.216995678125111	0.460250586949567	0.742490742225721
Merged-chr6-87535814-4	chr6	87535729	87535929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2570.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	6.08538599419683	5.81547839411437	6.54947324986918	6.06454381242306	5.63891112719097	5.5653527639394	6.15100575911977	5.73914722197804	-0.567758270573666	0.0507605333621801	0.233569332483458
Merged-chr7-135871172-4	chr7	135871051	135871251	+	918.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-154772.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	4.82888097842556	4.64225964754063	4.61374211795591	4.58643871933699	4.37305636444191	4.32937603584572	4.63051342678036	4.72319368006985	-0.319147908799501	0.380658903324092	0.682959506520613
Merged-chr11-22657167-2	chr11	22657067	22657267	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144884.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	2.63453726018408	3.22324053221814	2.85973497164619	2.80310055562831	2.81875633926184	3.28220964086997	3.09906964034192	3.27104954367095	0.933425136604473	0.155570630066024	0.441227933013032
Merged-chr17-32284406-1	chr17	32284306	32284506	+	1000.0	f0_c57.idr	promoter-TSS (NM_198094)	promoter-TSS (NM_198094)	-273.0	NM_020508	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	5.2905988574437	5.44213900495564	5.01226778455364	4.79356222844216	5.44796680241465	6.0531771562727	5.29584991219491	5.56834475025326	0.831682246318173	0.01358116737719	0.0979228031544779
Merged-chr4-133468252-4	chr4	133468153	133468353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11880.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	7.87099354500421	7.91089923353966	7.51128512385237	7.37234532160597	7.5832968936831	7.51989929354521	7.45554267313209	7.37897975829147	-0.251785289660464	0.21061647991707	0.515153102093301
Merged-chr10-62582422-4	chr10	62582320	62582520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019553, exon 15 of 15)	exon (NM_019553, exon 15 of 15)	-3963.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	6.14363892252517	6.52526719362168	6.20486819871778	5.81100039372686	6.02024210977834	6.27957926532535	6.4512277671536	6.29461468144575	0.121276097514277	0.648450336156815	0.852216515459858
Merged-chr7-55853561-4	chr7	55853443	55853643	+	992.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 1 of 30)	L1ME3G|LINE|L1	11472.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	5.36506189434942	5.26196794778241	5.01345606709917	4.48224180436686	5.75453019572384	5.36132604387464	5.19166565399865	5.21402769930214	0.639410443939019	0.0797676871948717	0.305790351785
Merged-chr8-11016360-4	chr8	11016254	11016454	+	980.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-7924.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	5.26879542120537	5.08658455479487	5.8440376044123	5.81471314865467	5.28645788236935	5.0332643547949	5.10565306950438	6.21602012822602	-0.0675881922267204	0.866561047569295	0.950001534260153
Merged-chr9-111220746-4	chr9	111220641	111220841	+	874.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027742, intron 11 of 13)	intron (NM_027742, intron 11 of 13)	50867.0	NM_026810	17350.0	Mm.486383	NM_026810	ENSMUSG00000032498	Mlh1	1110035C23Rik|AI317206|AI325952|AI561766	mutL homolog 1	protein-coding	3.81725273329335	3.5754863490719	3.6399027340895	3.91388829166015	4.26914384125579	4.36847714465742	4.09614177485187	4.15561786381961	1.24628787433025	0.00535194015516611	0.049986320470354
Merged-chr13-38528408-4	chr13	38528325	38528525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145367)	promoter-TSS (NM_145367)	59.0	NM_145367	105245.0	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding	6.13108114767259	6.18489602947064	6.66171563422364	6.01873730134489	5.87555199921364	5.99429758914943	5.50273732885836	6.20523727505906	-0.540014145701162	0.0583430795016915	0.253876006331749
Merged-chr3-94949962-3	chr3	94949861	94950061	+	869.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA8|LINE|L1	-4147.0	NM_017395	53970.0	Mm.24308	NM_017395	ENSMUSG00000005774	Rfx5	-	regulatory factor X, 5 (influences HLA class II expression)	protein-coding	3.9195568517924	3.79997613314654	3.82581780534354	3.59726878909254	3.82763724620193	3.8957266947387	3.48081574093294	3.72184020651987	-0.112120185843319	0.813162048733939	0.927817858500442
Merged-chr2-112261935-4	chr2	112261833	112262033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025403)	promoter-TSS (NM_025403)	7.0	NM_025403	66181.0	Mm.272346	NM_025403	ENSMUSG00000027133	Nop10	1110036B12Rik|NOP10P|Nola3	NOP10 ribonucleoprotein	protein-coding	5.94143854628226	6.2169269222155	5.74136246131584	5.92357644485442	6.08646107187213	5.97321617977307	6.66926470076126	6.11176501185907	0.418695748780109	0.124203260616244	0.391058693652569
Merged-chr2-4573874-3	chr2	4573787	4573987	+	954.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 3 of 11)	intron (NM_001177844, intron 3 of 11)	14133.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	3.99143598937352	3.70082679526656	3.73332379686762	4.1669286415852	3.85881750334951	3.79348010638465	4.18723304564325	4.03557550801994	0.133370175740189	0.774674075925134	0.911971388291602
Merged-chr12-54795741-4	chr12	54795656	54795856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026998)	promoter-TSS (NM_026998)	-94.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	6.01973347799099	5.89213795706844	6.34769114025415	6.31998422002208	6.26256384759865	6.00948815291437	6.03301349058256	5.9943678407664	-0.122444391039628	0.625136532620615	0.839735974131569
Merged-chr6-54705457-4	chr6	54705376	54705576	+	909.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23852.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	4.28885887310658	4.19384176006011	4.45693604706922	4.22727233995978	4.4847799726492	4.3705083735256	4.39696839439228	4.19442400030154	0.20073860349639	0.599554019044445	0.82646936617904
Merged-chr13-60594443-4	chr13	60594336	60594536	+	960.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-7511.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	5.24204341602096	5.1104185778972	5.21207000987545	5.05277789953606	4.82698299348208	5.18627722969055	5.3864419165248	5.53629561179031	0.188351862525069	0.561528520782956	0.80494560024742
Merged-chr12-79050997-3	chr12	79050907	79051107	+	954.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181073, intron 4 of 28)	intron (NM_181073, intron 4 of 28)	21844.0	NM_181073	211945.0	Mm.478321	NM_181073	ENSMUSG00000060716	Plekhh1	AV308913|C77772|D630024D12Rik|mKIAA1200	pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	protein-coding	4.56196301905871	4.67886008346659	4.60138419454191	4.55540601793059	4.81759095513335	4.43077907279132	4.28377903446454	4.09230064355122	-0.328612152699584	0.413832470520274	0.708769033454597
Merged-chr9-25508975-4	chr9	25508840	25509040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	27343.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	8.39416153911918	8.48791051133043	8.58228163289728	8.47213440851743	8.23126359428965	7.95833481439005	8.19710930629559	7.97757478605164	-0.487035777010891	0.00236282110780303	0.0265776301568128
Merged-chr13-60892982-4	chr13	60892885	60893085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	4462.0	NM_007797	13025.0	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	6.14855062587014	5.5326715691015	5.80583889191154	6.17543277397622	6.27577446938055	5.55131545232538	6.08009974133854	5.7513796774389	0.0114520584692497	0.969860334330472	0.989113198611538
Merged-chr5-122343936-4	chr5	122343868	122344068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144912, intron 5 of 10)	intron (NM_144912, intron 5 of 10)	10227.0	NM_144912	231724.0	Mm.255587	NM_144912	ENSMUSG00000038569	Rad9b	A630082N15Rik|BC021784	RAD9 checkpoint clamp component B	protein-coding	5.64037612333594	6.02740229440588	5.76944615112923	6.07524689387897	5.51968039438966	5.30275031490153	5.50104235898411	6.277501376768	-0.309925087534854	0.335874588824465	0.646035084628611
Merged-chr7-98052211-2	chr7	98052160	98052360	+	685.666626	f0_c57.idr|f1_c57bl6.idr	exon (NM_001256082, exon 48 of 49)	exon (NM_001256082, exon 48 of 49)	56988.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	1.95064790003333	2.05386520512885	2.03317684433546	1.80539515797456	2.40036995563223	2.36167581725208	2.31189578177745	2.50096226140828	3.53486084845603	8.59452736221063e-05	0.00178926546684642
Merged-chr18-35889260-3	chr18	35889141	35889341	+	719.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	34554.0	NM_001357459	67393.0	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	3.39830010781794	3.32468871294555	3.15416716330944	3.23806945813802	3.36176173370382	3.56896870301243	3.54070892763905	3.4514175181472	0.698235663966205	0.170876147321594	0.464014859975631
Merged-chr15-53474771-3	chr15	53474658	53474858	+	575.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	-128575.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	2.49060143936431	2.40540443037018	2.60804540878618	2.55760019111079	2.1940667425008	2.318852870568	2.21376794478387	2.29139083489886	-1.72089279486904	0.0282064640079738	0.160869350045482
Merged-chr14-21984965-3	chr14	21984848	21985048	+	920.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145459, exon 3 of 3)	exon (NM_145459, exon 3 of 3)	4653.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	3.66284107869956	3.82990640119415	3.95346345272584	3.95210645873467	3.71748439600931	3.78003129150918	3.59464736022062	3.48871308377738	-0.637901704904093	0.177585022651456	0.473048326309195
Merged-chr14-103349565-4	chr14	103349460	103349660	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2760.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	5.4984262185016	5.585672281981	5.52712921634612	5.87705690361007	5.31524169796935	5.67375695276462	5.67708048905294	5.31629394052024	-0.257812051909904	0.373535729202035	0.677113210162732
Merged-chr7-122396126-3	chr7	122396014	122396214	+	811.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	106989.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	3.48866053320261	3.59980309804659	3.30275646358631	3.60299637443754	3.58345256003185	3.5450303340255	3.53204021214852	4.00353419444533	0.528729553387095	0.298177203170604	0.610320314800708
Merged-chr4-105268530-4	chr4	105268422	105268622	+	912.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111175.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.15330706328746	4.63384032799478	3.98796564802483	4.64555025454778	4.55711688984618	4.68565719939709	4.32800606613605	4.38866912286834	0.212581165700498	0.616388168246744	0.834945732917864
Merged-chr11-48856606-4	chr11	48856516	48856716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14804.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	5.85473037408681	5.75975372640949	5.54521237103194	5.57379353783884	5.96060854605592	6.11799790183558	5.60187457413661	6.00264026497054	0.409525284272012	0.121101198046716	0.385365798272854
Merged-chr1-36070599-3	chr1	36070509	36070709	+	855.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	2209.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	3.50797512264261	3.87738743720075	3.76769013960552	3.65316474816478	3.70513341027081	3.29655782179834	3.55089653737096	3.50660823076588	-0.559220222650195	0.271695471048595	0.583281843628624
Merged-chr10-127593668-3	chr10	127593555	127593755	+	886.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 9 of 88)	intron (NM_008512, intron 9 of 88)	27493.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	3.33047839119042	3.26668289176866	3.49416925536718	3.22350347565531	3.40961195833691	3.38409927896537	3.31852110793768	3.49212678071946	0.28007229994688	0.585495739373054	0.818172766912737
Merged-chr9-99385420-5	chr9	99385232	99385432	+	766.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008624)	TTS (NM_008624)	-26802.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	3.5133353917998	3.37419949593604	3.23962849261946	3.07782850216995	3.38084199487072	3.41283182452459	3.2281213175147	3.35458816677233	0.167334053005901	0.756421633968097	0.904303657841334
Merged-chr14-45318153-2	chr14	45318053	45318253	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015774, intron 1 of 15)	CpG	419.0	NM_015774	50527.0	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	3.75558610985232	3.87045319406652	3.90724640037327	3.5727526735412	3.63695949666326	4.12277368030787	3.63084625069475	3.95143872260814	0.210046527096244	0.659296445359691	0.858230828168571
Merged-chr11-46128737-3	chr11	46128650	46128850	+	861.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311209, intron 1 of 11)	intron (NM_001311209, intron 1 of 11)	846.0	NM_001311209	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	3.19480939537092	3.15824299938769	3.19516397987204	3.50206488259705	3.27213112804171	3.72307825643946	3.93170967276071	3.55039512591127	1.16523114840376	0.0415323637007636	0.206411961727179
Merged-chr1-171827867-4	chr1	171827762	171827962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-11835.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	7.39979566257277	7.57539194630592	7.14333678905715	7.20975174485817	7.39600983400833	7.40132700888012	7.46644024991128	7.07731623551403	0.00654997887755566	0.973810209020187	0.990599589807354
Merged-chr3-88477936-4	chr3	88477838	88478038	+	951.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15374.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	4.73371164140024	4.69044669736085	4.52886091694192	4.60446534128216	4.89181292177115	5.04837261494639	4.59394759458786	4.80508889818722	0.430581364151321	0.205953281423194	0.509790952094225
Merged-chr8-109869145-4	chr8	109869048	109869248	+	950.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122594, intron 1 of 18)	CpG	545.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	4.56640976340689	4.73197812387312	4.86213501796326	4.57436233652932	4.65715327100783	4.51907073724202	4.37221950202744	4.92201307944592	-0.101442703102316	0.781365454257031	0.914866755241407
Merged-chr17-36218918-4	chr17	36218839	36219039	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-28788.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	5.24119953891205	5.31418892248138	5.39181039828361	5.51242032941349	5.33652974474469	5.2135762542989	5.04816312191278	5.52169090350414	-0.153717717252377	0.604117157816321	0.828365539899979
Merged-chr3-93552519-4	chr3	93552432	93552632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2585.0	NM_009112	20194.0	Mm.1	NM_009112	ENSMUSG00000041959	S100a10	42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11	S100 calcium binding protein A10 (calpactin)	protein-coding	5.48482694174252	5.48489650763373	6.21828744779397	5.93894979431936	5.73534997765701	5.4725376601377	5.62600003694717	5.8897775595497	-0.214838118905637	0.475416644798987	0.752260389475083
Merged-chr2-164078112-3	chr2	164077971	164078171	+	914.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021420, intron 1 of 10)	intron (NM_021420, intron 1 of 10)	3893.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	3.42612664601928	3.74456935554625	4.07693326218936	2.89233410075091	3.91573168697805	3.35008985619013	3.2887202312406	3.2987330519567	-0.377323050618545	0.56584778413827	0.807783748011785
Merged-chr10-19053764-4	chr10	19053671	19053871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-38361.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	6.51166395399965	6.78293895546979	6.57944623340628	6.53854683926378	6.84728998033115	6.68934029569081	6.89663660649188	6.66878307655287	0.254444653683428	0.216304036518249	0.522833404170659
Merged-chr7-125613853-4	chr7	125613765	125613965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021887, intron 1 of 8)	L1MA9|LINE|L1	10436.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	6.35631076172615	6.31901558631308	6.62009071186689	6.4208953667999	5.79199134155503	5.6590587894841	6.03753658868618	6.24524436897705	-0.740269202342872	0.00313963275037367	0.033097736898526
Merged-chr1-180822480-4	chr1	180822360	180822560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8855.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	6.04300328799683	5.92453727478234	5.79115579922979	6.22265366163357	5.91910170241162	5.86226607576497	6.09361181860599	6.15888926629466	-0.0157857464772376	0.950175466176839	0.982217341838902
Merged-chr7-44849082-4	chr7	44848975	44849175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290695)	promoter-TSS (NM_001290695)	4.0	NM_001042655	233204.0	Mm.27567	NM_144924	ENSMUSG00000038520	Tbc1d17	BC017607	TBC1 domain family, member 17	protein-coding	8.68759586959655	8.93608543295881	8.46621913444851	8.4100157486986	8.6343154748196	9.00270668356208	8.77690605844198	8.62116284836791	0.157806649771067	0.392274518933799	0.691857527785958
Merged-chr11-97546487-4	chr11	97546377	97546577	+	810.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 3 of 19)	CpG	28649.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	3.78416793224195	3.72070198084477	3.5137539388387	3.67287030067935	3.65933533245433	3.90432829749145	3.55931662451284	3.78247656881558	0.157857402207036	0.736146118737417	0.895884000208244
Merged-chr12-99645202-2	chr12	99645102	99645302	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-17228.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	4.42948013038841	3.91581533804334	4.3138321878014	2.82091863406285	4.12908339699424	3.89710727723117	3.81206150423083	4.75169180181268	0.339776727141746	0.733882578407107	0.894686779360896
Merged-chr14-21194526-4	chr14	21194422	21194622	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 4 of 10)	MER76|LTR|ERVL	118370.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	5.74601315694112	5.28905553418055	5.74703451556716	6.17748606506862	5.29905366373529	5.1347183590126	5.64763184271453	4.85999400627726	-0.897702225392348	0.00995009440214547	0.078631927328779
Merged-chr4-155488449-4	chr4	155488346	155488546	+	931.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2915.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	4.06792642289265	4.45597970490304	4.17241392891001	4.52209891947387	4.59768958463274	4.19340053220888	4.33889041410263	4.59155758535976	0.264409073821309	0.516557253745723	0.778279996996913
Merged-chr19-6401607-4	chr19	6401520	6401720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011242, intron 1 of 16)	CpG	1037.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	6.96294006539045	6.76448272433437	6.74368363925663	6.66813100095641	6.98423090978671	7.07587891473543	7.17903987700529	6.95923409929288	0.377452221568028	0.0541008838497532	0.242856224853906
Merged-chr13-113612614-4	chr13	113612480	113612680	+	881.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	5984.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	4.63156758167192	4.41845579271622	4.01003226150915	3.62200110968908	4.29532606634435	4.18884680005246	4.23331592989372	4.15838775526597	-0.00100634686395683	0.998322459020041	0.999249002441009
Merged-chr2-119594264-4	chr2	119594180	119594380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015473)	promoter-TSS (NR_015473)	-16.0	NR_027832	66602.0	Mm.379181	NR_015473	ENSMUSG00000085438	1700020I14Rik	1190006L01Rik|4933437I03Rik|AI451541|AI585852|AW538376|AW558897|Cyrano	RIKEN cDNA 1700020I14 gene	ncRNA	6.9261222654392	6.75361443975357	6.5191371701163	6.71454096637248	7.01749823071485	7.1540526558712	7.02621992075149	6.92243047351195	0.414195612865335	0.0379749101295273	0.195008738771346
Merged-chr14-67359269-4	chr14	67359167	67359367	+	955.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045961, intron 3 of 5)	intron (NR_045961, intron 3 of 5)	38475.0	NR_045961	73977.0	Mm.414915	NR_045961	ENSMUSG00000093472	4930438E09Rik	-	RIKEN cDNA 4930438E09 gene	ncRNA	4.4578505749174	4.48780861740563	4.36930572995612	4.55004001344631	4.68835299653488	4.45081709280615	4.52114445298322	4.76057933886761	0.310527806467925	0.385930432399008	0.687298864016961
Merged-chr12-59579866-1	chr12	59579766	59579966	+	914.0	f0_balb.idr	Intergenic	Intergenic	-360383.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	3.36463489859719	3.77625678338324	4.10478668146718	3.98714082905694	3.11684721608145	3.12636999873739	3.412869512402	3.08889477813784	-2.34343521460898	0.000131237761486497	0.0025508936714493
Merged-chr4-43046200-4	chr4	43046111	43046311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172691)	promoter-TSS (NM_172691)	9.0	NR_045567	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	7.09817632397766	7.02722665366277	6.69759091900258	6.69429175176136	6.72605435908362	6.77978699200955	6.80704771851353	6.69282504004166	-0.187496469358985	0.374714048871325	0.677891254741963
Merged-chr5-52386162-3	chr5	52386039	52386239	+	721.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256059, intron 10 of 11)	intron (NM_001256059, intron 10 of 11)	22335.0	NM_011435	20657.0	Mm.2407	NM_011435	ENSMUSG00000072941	Sod3	AI314465|EC-SOD	superoxide dismutase 3, extracellular	protein-coding	3.43922047433351	3.43652133726949	3.43964164113243	3.18767831253605	4.22642802073948	4.00579992393749	4.03645013714248	3.78159175090616	2.05183198536644	1.5108569245394e-05	0.000398153591380193
Merged-chr1-149892487-3	chr1	149892395	149892595	+	776.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 5 of 17)	intron (NM_008869, intron 5 of 17)	29944.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	3.23778245385064	3.12255786242707	3.12246518568856	3.35842601757314	2.98446076371231	3.16954583058595	3.050407610095	3.29051172475213	-0.38121152567146	0.501597798097525	0.769283783387208
Merged-chr11-50286570-4	chr11	50286471	50286671	+	954.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	5765.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	5.7554003824576	5.42139946650894	5.06845457443269	5.21290633610603	5.59596112348289	5.38278882540126	5.27521344035187	4.82598131212097	-0.135103084536522	0.694273164470787	0.875811600777424
Merged-chr4-129455529-4	chr4	129455432	129455632	+	764.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6147.0	NM_133889	100383.0	Mm.17918	NM_133889	ENSMUSG00000040859	Bsdc1	1110063F24Rik|AW011758	BSD domain containing 1	protein-coding	3.78473115621554	3.84711052761642	3.62387476869431	3.73556735376323	3.75959177320346	3.74097314448885	3.95514814948962	3.7315811250579	0.144182070678397	0.749193754579621	0.901219204917164
Merged-chr11-94405465-3	chr11	94405369	94405569	+	957.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12493.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	4.94017704688843	4.2329043341351	5.28529959760853	5.03254767834056	4.18944942299189	4.05675828004099	4.44387507919606	4.21945265998724	-1.54863845341811	0.000402968217999497	0.00647942484236837
Merged-chr2-170131220-4	chr2	170131162	170131362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033299)	promoter-TSS (NM_001033299)	-42.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	6.20461722193885	6.28777427999605	5.85820284049064	5.69843829805548	6.60113156015371	7.12433803285614	6.66820628678621	6.22136859285024	0.988348658167445	0.000432519740206099	0.00685664200181068
Merged-chr16-31759556-4	chr16	31759451	31759651	+	947.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252436, intron 1 of 22)	intron (NM_001252436, intron 1 of 22)	5201.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	4.70287902961506	5.04383942317659	4.52633270114474	4.88409975875741	5.0920729654936	4.92003268511954	4.90736963134271	5.12042732041984	0.40146605285463	0.231227904342494	0.540724853688999
Merged-chr4-43040366-4	chr4	43040268	43040468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253353)	promoter-TSS (NM_001253353)	-67.0	NM_001253354	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	8.93268942293609	9.01206451593578	8.98090726493995	8.79980889172521	8.74663240612317	9.02065663453233	9.06511046291782	8.6268022345696	-0.0690811851914205	0.675193264771802	0.866604873340231
Merged-chr11-102040309-4	chr11	102040207	102040407	+	960.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1204.0	NM_001160711	52685.0	Mm.266885	NM_027987	ENSMUSG00000017309	Cd300lg	2310016B05Rik|Clm9|D11Ertd736e	CD300 molecule like family member G	protein-coding	5.49397019518115	5.73010288985643	5.19091211205694	5.52453388812594	5.35035803485284	5.33413820195098	5.66539397237803	5.1169787837412	-0.214493193644526	0.478057362113501	0.754192228775143
Merged-chr14-54786099-4	chr14	54786005	54786205	+	820.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4219.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	4.01943826344053	4.09915796906134	3.62297287254769	3.89016344281101	4.34670361743395	4.19315134180822	4.41293742614261	3.80554645640847	0.762245532340934	0.0925306445925869	0.33272234157392
Merged-chr1-131528968-1	chr1	131528868	131529068	+	581.0	f0_balb.idr	intron (NM_175382, intron 1 of 3)	intron (NM_175382, intron 1 of 3)	1065.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	3.1631408043348	2.94956995039784	2.97653836645891	3.23782920377944	3.07135318028613	3.21425123764046	3.26136287656965	3.27284656677778	0.412161392309446	0.468490937776579	0.747803507343786
Merged-chr2-68471314-4	chr2	68471159	68471359	+	934.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 1 of 17)	CpG	722.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	4.00662212285776	4.23684773514849	4.3594873043695	4.0879185341757	3.75283898608396	4.07881830265325	4.08694926101224	4.23584814348917	-0.349393006048797	0.418764310092156	0.712054666228573
Merged-chr11-74485677-3	chr11	74485549	74485749	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	104509.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	3.70583983617451	3.55505573665691	3.14426123316105	2.87184603703976	4.1054639517107	3.72192669784673	4.00194127206427	3.54139838837132	1.56664872781229	0.00878906451412246	0.0719033141943413
Merged-chr7-139969381-2	chr7	139969281	139969481	+	845.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	9374.0	NM_001347614	381933.0	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	2.62003629582819	2.72739963868006	2.88355068264961	2.47167532541265	2.84108902686668	2.93180320302078	2.98480683732619	2.82103084888749	1.04558527307358	0.103501253268624	0.353525395000116
Merged-chr1-120099657-4	chr1	120099555	120099755	+	937.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21264.0	NM_001037999	13167.0	Mm.2785	NM_007830	ENSMUSG00000026385	Dbi	ACBD1|Acbp|EP|endozepine	diazepam binding inhibitor	protein-coding	4.92595258665437	5.03740776267724	5.10038954746035	4.35834254733723	6.54965676428108	6.39786022655655	6.61045318169496	6.52361392875511	2.81869066971561	6.17299499186576e-23	2.96883520625684e-20
Merged-chr11-116616974-4	chr11	116616876	116617076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	7276.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	6.8726130094752	6.84484087902581	6.27747132564488	6.49167327904919	6.66317706829906	6.98359571463574	6.48705268134503	6.67514635208143	0.101007552189619	0.673994222814991	0.865968369660172
Merged-chr16-38404387-3	chr16	38404278	38404478	+	807.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134102, intron 8 of 10)	intron (NM_134102, intron 8 of 10)	28767.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	2.95962903209841	3.40152404879609	3.16431447998004	3.37510906892875	3.52153238325962	3.33715545206773	3.27289492301235	3.39349572057152	0.501068680636773	0.373123381754702	0.676782538167593
Merged-chr6-127246035-4	chr6	127245904	127246104	+	852.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61963.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	4.38049990498613	3.88971126104579	4.09580386765593	3.96952614781095	4.84843252828076	4.46812957968345	4.72546200081897	4.29008863215206	1.23646654320114	0.00238364561612054	0.0267468971317996
Merged-chr1-157445586-4	chr1	157445490	157445690	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12978.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	5.46903585211994	4.99134717746514	5.3728332636805	5.28098777780399	6.18534000355683	6.27419370676093	6.26080449720048	6.38329878807948	1.60395551762993	5.23039460507477e-10	3.52885552222386e-08
Merged-chr12-79135168-3	chr12	79135078	79135278	+	756.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	4390.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	3.72792457121812	3.72632926723748	3.63384727914489	3.70617468459301	3.37216236698409	3.41209131178102	3.22342973826556	3.09208753421579	-1.45737776130387	0.00687750935067743	0.0601393412864703
Merged-chr2-127336047-4	chr2	127335946	127336146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010090)	promoter-TSS (NM_010090)	-113.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	8.15229203162097	8.6834871301637	8.51663466637769	8.25160659213481	8.65101819544079	8.75143579527184	8.60584708371446	8.41029055418701	0.244393741292816	0.177499085645508	0.472907898531277
Merged-chr5-72764150-3	chr5	72764079	72764279	+	954.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001113460, exon 14 of 19)	exon (NM_001113460, exon 14 of 19)	-11402.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	3.18294569763893	3.08079006459809	3.40482742286038	3.50701015740932	3.35427558956979	3.29397773688979	2.90934237230438	3.24072583274653	-0.361322167031075	0.541779815708854	0.793484475356801
Merged-chr5-139387993-4	chr5	139387877	139388077	+	935.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	-1927.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	4.98301671761453	4.63580314725737	4.70387006059599	5.17358758151258	4.83292745115861	4.42336987447878	4.37724241506049	4.88270248357357	-0.514554257320827	0.17986900678512	0.476174211848032
Merged-chr2-90504206-4	chr2	90504095	90504295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-25021.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.20168902868115	5.83881439402253	5.83482742094337	5.90116922177208	6.11989591517642	5.6294694550406	5.80516155001694	5.59678572388023	-0.204678883085652	0.454185460467383	0.738059150052689
Merged-chr13-56609545-4	chr13	56609465	56609665	+	979.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009369)	promoter-TSS (NM_009369)	-21.0	NM_009369	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	4.83764920220864	4.94895603590832	4.76264450683323	4.95276009697374	4.90199107895191	4.58851459210447	4.61882264639583	5.26638396997983	-0.0127496472875116	0.971281769813575	0.989667458652484
Merged-chr2-11547812-3	chr2	11547727	11547927	+	744.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	6102.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	3.54689935223633	3.77841402273532	3.48742886844917	3.21364104354266	3.77045470566945	3.88421672120152	3.84145966144073	3.80953884625453	0.975899631703505	0.0475825157608503	0.224966847515215
Merged-chr7-90370448-4	chr7	90370376	90370576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040085, intron 4 of 18)	intron (NM_001040085, intron 4 of 18)	-16505.0	NM_001040087	83671.0	Mm.26751	NM_031394	ENSMUSG00000030616	Sytl2	AI266830|Slp2|mKIAA1597	synaptotagmin-like 2	protein-coding	6.98350682649814	6.75171284833131	7.09442414080469	7.34092791912505	7.08915450560074	6.67188522643304	7.12658124014009	7.19022643619934	-0.0456406337417701	0.840341012058645	0.939246943014465
Merged-chr11-89989129-4	chr11	89989080	89989280	+	831.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316372, intron 2 of 4)	intron (NM_001316372, intron 2 of 4)	13714.0	NM_008796	18559.0	Mm.5062	NM_008796	ENSMUSG00000020553	Pctp	PC-TP|StarD2	phosphatidylcholine transfer protein	protein-coding	3.90161477988986	3.82147108727778	3.80824976300098	3.70807099037612	3.68109127244753	3.77054619036707	3.5833690451118	3.59488109357572	-0.443202219771827	0.337767793384436	0.647573070380888
Merged-chr1-134747717-4	chr1	134747614	134747814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009307, exon 10 of 10)	3' UTR (NM_009307, exon 10 of 10)	38414.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	5.21773578294223	5.20281661794625	5.34251100517308	5.20329491660534	5.35783953761537	5.39360866522491	5.5547381176423	5.45159407721011	0.360516710373067	0.195193518729884	0.495954860772271
Merged-chr10-20040350-4	chr10	20040258	20040458	+	871.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 7 of 29)	intron (NM_008580, intron 7 of 29)	105832.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	4.52187045105747	4.4260111659763	4.52260788246889	4.65451568414484	4.13235990466718	4.53173835631527	4.1549640234631	4.01034153051633	-0.776668754983703	0.0504932391789589	0.233108364151967
Merged-chr7-135773952-4	chr7	135773849	135774049	+	948.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57570.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	4.68778476543193	5.02919108118744	4.95014104630442	5.015232918318	4.92390309734464	5.05305770510241	4.58228689134386	4.72626923671071	-0.201218969174772	0.554003799879114	0.800500121223594
Merged-chr4-117042012-1	chr4	117041912	117042112	+	862.0	f1_c57bl6.idr	intron (NM_001111277, intron 3 of 11)	intron (NM_001111277, intron 3 of 11)	22610.0	NM_001111277	108067.0	Mm.34612	NM_175135	ENSMUSG00000028683	Eif2b3	1190002P15Rik	eukaryotic translation initiation factor 2B, subunit 3	protein-coding	4.31566808138655	3.96927246029693	4.50881010408949	3.51398079912035	4.25398091175249	4.05750731599629	4.3365785104441	4.31353486567622	0.30502282091886	0.529574528835081	0.785729465709597
Merged-chr19-44069391-4	chr19	44069286	44069486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164359, exon 2 of 12)	5' UTR (NM_001164359, exon 2 of 12)	300.0	NM_145502	226144.0	Mm.279865	NM_145502	ENSMUSG00000025198	Erlin1	2810439N09Rik|C80197|Keo4|Spfh1	ER lipid raft associated 1	protein-coding	6.32791348028899	6.53652892938324	6.21371513472532	5.98790296790647	6.47275261136988	6.34995968243341	6.68590587713706	6.24886131049719	0.270991576082695	0.270202840968312	0.58201749182277
Merged-chr6-48473774-2	chr6	48473674	48473874	+	577.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173428, exon 51 of 103)	exon (NM_173428, exon 51 of 103)	25545.0	NM_173428	243369.0	Mm.25039	NM_173428	ENSMUSG00000029797	Sspo	C79529|Scospondin	SCO-spondin	protein-coding	2.98442232977103	2.88092570267996	2.57654722230703	2.83336479275668	2.99912384842134	2.96980707550666	2.9734896036078	3.09499091225793	0.7877890145145	0.201947293376808	0.504453637314189
Merged-chr4-47349923-4	chr4	47349811	47350011	+	956.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3311.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	4.87632329866004	4.69617508441508	5.22731580635706	5.01749515588439	5.0929872946496	4.93784996010641	4.85394266494358	4.75896031979357	-0.0874666797586462	0.794801815445631	0.92061077545697
Merged-chr2-167747645-4	chr2	167747544	167747744	+	973.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56467.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	5.52519092215253	5.96694463926645	5.68804814524246	5.31580876993418	5.8285256196022	5.88773841325186	5.88851180050962	5.40185554334627	0.219920268882477	0.458864248899869	0.741615730170609
Merged-chr7-19698241-4	chr7	19698127	19698327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009696, exon 2 of 4)	exon (NM_009696, exon 2 of 4)	171.0	NM_001305819	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	5.36584232460782	5.25354999473826	5.70871603456121	5.79498705969811	5.36330701949168	5.41678729414762	5.39873866256532	5.36304367238838	-0.316400101490455	0.2835689504102	0.595670507139694
Merged-chr19-4135709-3	chr19	4135635	4135835	+	753.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144532, exon 6 of 6)	3' UTR (NM_144532, exon 6 of 6)	3874.0	NM_144532	73660.0	Mm.379226	NM_144532	ENSMUSG00000024842	Cabp4	2410038D05Rik	calcium binding protein 4	protein-coding	3.38304426206723	3.85132996226923	3.51510933450514	3.0402671038256	3.9921822923659	4.28077171077161	4.01086561349674	3.63330686333628	1.54241518497536	0.00477557726862176	0.0459166303394878
Merged-chr6-88027569-1	chr6	88027469	88027669	+	622.0	f0_balb.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	-7774.0	NM_001293654	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	3.15627580053307	3.35967066589702	3.15668610634176	3.2054501962646	2.84142115772799	3.14406097611776	2.89081889137185	3.31928202445374	-0.656369759576301	0.273704911034556	0.585380302951494
Merged-chr2-28418257-4	chr2	28418146	28418346	+	715.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29695.0	NM_001005420	241289.0	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	3.60145922045095	3.86348813250055	3.65810119355795	3.71237784768253	3.95403758974394	3.39256930334946	3.79720794971362	3.94917010790467	0.250844996398216	0.607001186663389	0.829747728089716
Merged-chr2-128815705-4	chr2	128815604	128815804	+	894.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2599.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	3.73405178119997	4.24024989412934	4.79985676101944	4.54198750582887	4.10268605277791	3.98363998044869	4.25036175089905	4.12800280843453	-0.658135857609389	0.165796047800048	0.456755694792725
Merged-chr7-63999844-4	chr7	63999730	63999930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60915.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	6.6088696756398	6.40055396594819	6.57741572720753	6.80647091037912	7.01487214935424	6.99332358168387	6.91172273971879	6.57272204082092	0.383260078604823	0.0836026393919077	0.31437144971271
Merged-chr1-71729137-3	chr1	71729026	71729226	+	737.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75791.0	NR_040308	100042814.0	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	Gm15456	apolipoprotein L 7d	ncRNA	3.96297637401466	3.36607324747376	3.96358603579369	4.17297373764233	3.61662872713951	3.83218773485706	3.94595485040079	3.71059303935784	-0.366411233473098	0.476098972591702	0.752752032426828
Merged-chr3-132747223-2	chr3	132747123	132747323	+	899.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163455, intron 20 of 25)	intron (NM_001163455, intron 20 of 25)	63079.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	3.31635427136376	3.31051798521061	3.25547923988801	3.71748589989091	3.62824252915789	3.42846984402842	3.36290211094532	3.37354934587836	0.0885039653961946	0.871791983078303	0.95183223179801
Merged-chr7-78864602-4	chr7	78864511	78864711	+	893.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17400.0	NM_029585	76375.0	Mm.250541	NM_029585	ENSMUSG00000030610	Det1	2610034H20Rik	de-etiolated homolog 1 (Arabidopsis)	protein-coding	4.39179996136771	4.58682283449891	4.86804095476017	4.64183389402738	4.6226082717416	4.78568468968604	4.50838850907375	4.86471787207302	0.141180754267723	0.692953242395464	0.875187765226167
Merged-chr7-80928570-4	chr7	80928470	80928670	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019951, intron 2 of 5)	intron (NM_019951, intron 2 of 5)	18980.0	NM_019951	56529.0	Mm.43760	NM_019951	ENSMUSG00000025724	Sec11a	1810012E07Rik|18kDa|Sec11l1|Sid2895p|Spc18|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding	3.78100037602772	3.89176937942943	4.18774218096829	4.43367273181352	4.07989307029022	3.90205493484943	4.16898033308664	4.30925082084388	0.0163482466822757	0.971733717229484	0.989737326894157
Merged-chr6-140811203-4	chr6	140811116	140811316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	184331.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	5.16623594739696	4.90169968009262	5.37865397850737	5.62927985843934	4.86350964468698	4.97054493811706	5.40561379672001	5.55569195076347	-0.150883791239172	0.673878129147278	0.865889906211285
Merged-chr11-85652281-3	chr11	85652183	85652383	+	585.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	67461.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	3.22802294094028	2.90764018274542	3.22852252424543	2.99872909131077	2.82473581819398	2.70788427928991	2.74603132663093	2.95114815949059	-1.2666999396829	0.0489619329842194	0.228828721463149
Merged-chr18-60763091-4	chr18	60763012	60763212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-11484.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	7.06962802423185	6.93432770144087	7.26142674583933	7.10831295382377	6.97323228819703	6.78712852937075	7.57500394429727	7.21407385822968	0.100596406537863	0.659496389108518	0.858318434118141
Merged-chr13-115130320-3	chr13	115130222	115130422	+	607.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28358.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	2.96091759720679	2.91656863608137	2.69179177213876	2.98180950641428	2.97078335487762	3.13014899365012	3.00945496469372	3.01923259962169	0.557413638184758	0.351571863853455	0.658910409408162
Merged-chr2-35135684-4	chr2	35135581	35135781	+	890.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_012018, exon 13 of 44)	exon (NM_012018, exon 13 of 44)	3447.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	4.5749491783969	4.49092044483659	4.87345128895088	5.00073928778111	4.25643770852187	4.66570119772096	4.94443449857854	4.53019330274621	-0.313735142948291	0.42522501764801	0.716754085705402
Merged-chr10-75772848-4	chr10	75772775	75772975	+	902.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010027, exon 2 of 3)	exon (NM_010027, exon 2 of 3)	499.0	NM_010027	13202.0	Mm.298947	NM_010027	ENSMUSG00000001666	Ddt	C78655	D-dopachrome tautomerase	protein-coding	3.86779908887759	3.86601147732209	4.24470234443103	4.13869086863475	4.14640834099276	3.81280073583667	4.14189341423899	4.20064593791808	0.113043229687445	0.794875731079989	0.920648599178952
Merged-chr11-58126770-4	chr11	58126616	58126816	+	919.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166669, intron 24 of 27)	intron (NM_001166669, intron 24 of 27)	22487.0	NM_001356477	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	6.06464138543761	6.06387997743425	5.72022917149495	5.72816769658686	4.65208534211555	4.68146458017684	4.67038831898268	4.48166941863148	-2.41654435558265	3.95776862233971e-13	4.60310478381565e-11
Merged-chr9-44420324-4	chr9	44420222	44420422	+	741.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	-2253.0	NM_201372	382073.0	Mm.259573	NM_201372	ENSMUSG00000043923	Ccdc84	D630044F24Rik|Gm1114	coiled-coil domain containing 84	protein-coding	3.36544107390025	3.42598127749392	3.52296421404672	3.26115598396775	3.20489503332369	3.48007109429527	3.23787095781327	3.18552396951904	-0.406787903148258	0.446576184086097	0.732198872647629
Merged-chr2-52859238-4	chr2	52859137	52859337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	1369.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	5.04074086488379	4.96132073863614	5.44317117829873	5.23478878102465	5.11612815087264	5.07471379081755	4.53548876721079	4.96878562238599	-0.45111473313211	0.187887122492843	0.486384110122129
Merged-chr2-127008702-4	chr2	127008589	127008789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175550)	promoter-TSS (NM_175550)	-22.0	NM_175550	108011.0	Mm.134045	NM_175550	ENSMUSG00000001998	Ap4e1	2310033A20Rik|9930028M04Rik|AV087807	adaptor-related protein complex AP-4, epsilon 1	protein-coding	5.95185784670338	6.23269046360979	6.28179231440196	6.0849164671118	5.93199319237373	6.26182202991346	6.1166065368047	6.49125071139067	0.102091883483204	0.682638517283508	0.869969330045886
Merged-chr5-64336917-4	chr5	64336816	64337016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 16 of 18)	intron (NM_001289514, intron 16 of 18)	106559.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	6.31454977461047	5.60014303183025	6.10468283499998	6.4073673860823	6.20384115199364	6.17264554804595	6.17319540798604	6.32865884204316	0.102479826209159	0.703687814091909	0.880845147062817
Merged-chr7-79728439-4	chr7	79728339	79728539	+	846.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175640, intron 3 of 8)	intron (NM_175640, intron 3 of 8)	4337.0	NM_175640	103968.0	Mm.254917	NM_175640	ENSMUSG00000030546	Plin1	6030432J05Rik|Peri|Plin	perilipin 1	protein-coding	3.82249378545422	3.87282703199415	3.96129326402208	3.7839886824185	3.66662376547261	3.66944673793289	3.5983226441594	3.66592310729629	-0.625616997314541	0.172782815017923	0.466435619909764
Merged-chr11-46479498-4	chr11	46479397	46479597	+	904.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_134250, exon 7 of 7)	3' UTR (NM_134250, exon 7 of 7)	24566.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	4.70605925762835	4.39539742170055	4.5536084680439	5.11398553235747	4.20109262946283	4.46204936032183	4.68422719238724	4.32952571876644	-0.694139611468248	0.0898981108113423	0.327399922126285
Merged-chr10-8778117-4	chr10	8778040	8778240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	107930.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	7.2420692410331	7.71730589724391	7.77270627686082	7.61648265897605	7.22807897346557	7.22872659184442	7.38332368879158	7.05853093365296	-0.501738178846748	0.0113579366178081	0.0864094239545703
Merged-chr1-37472481-4	chr1	37472373	37472573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 5 of 15)	L1M3b|LINE|L1	16132.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	6.02528752422543	6.17048138673972	5.9837729407202	6.14024924204178	5.74415624937406	5.78724783419537	5.81700069771146	5.97950535480091	-0.410555387195893	0.0883991077716368	0.324442200909601
Merged-chr18-67390705-4	chr18	67390615	67390815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026473)	promoter-TSS (NM_026473)	-16.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	7.32295558585963	7.73040355909004	7.38594529201582	7.43155631545831	7.24786587430718	7.3795611552059	7.61064256187224	7.60143810548961	-0.0199587457154589	0.918804996237758	0.970137918006816
Merged-chr16-30364820-3	chr16	30364732	30364932	+	783.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128096, intron 3 of 33)	intron (NM_001128096, intron 3 of 33)	23698.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	3.81056261095404	3.399904631907	3.54220019074427	3.22149005407509	3.18222514871967	3.02475792982702	3.19005073458949	3.48911904584852	-0.974502463030521	0.0962055125921407	0.339909271358879
Merged-chr12-111426234-4	chr12	111426106	111426306	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028807, exon 8 of 13)	exon (NM_028807, exon 8 of 13)	8761.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	4.84361949079504	5.3225383501067	4.72190775736039	4.87387651991441	4.95719014758147	5.29554140637983	4.93251105265512	5.18111536703016	0.254852899223767	0.451226208035159	0.735820528803284
Merged-chr4-139213331-4	chr4	139213240	139213440	+	932.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	19229.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	4.24871609567202	4.39873134074358	4.19832784758	4.41977000245219	4.72012644716801	4.65110040059279	4.78531300234016	4.55672928269814	0.7842135930424	0.0307516857392786	0.170081994051628
Merged-chr10-99599561-1	chr10	99599461	99599661	+	974.3333130000001	f0_c57.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	-9610.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	2.85062159544669	2.77400184517134	2.85090221340672	2.34275368225397	4.04695802812351	3.78159200184626	4.1973483343377	3.8387841335307	7.3654456490022	1.13101063149275e-15	2.01260514347557e-13
Merged-chr5-104946835-4	chr5	104946733	104946933	+	748.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030239, intron 13 of 15)	Lx8b|LINE|L1	35884.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	4.14194868223852	4.21772205094542	3.98338656102114	3.56273998556726	4.72079324320111	4.93356268318066	4.26499637555017	4.14002712090214	1.36184767125139	0.00313129400421529	0.0330196112483022
Merged-chr11-97900012-4	chr11	97899902	97900102	+	891.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15848.0	NM_001081435	72973.0	Mm.245939	NM_001081435	ENSMUSG00000070336	Fbxo47	2900052P03Rik|Gm1562	F-box protein 47	protein-coding	4.11192734161465	4.51097416791849	4.11251163883646	4.22237648699143	4.7089055270721	4.1849498042398	4.24243397613302	4.75510495480538	0.592493991301302	0.153103453111409	0.437555330104179
Merged-chr2-60721185-2	chr2	60721085	60721285	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159564, intron 1 of 17)	intron (NM_001159564, intron 1 of 17)	1418.0	NM_001159564	16420.0	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	2.81623749366989	2.6643844260887	2.81661510086436	2.74443782781567	2.48395005762698	2.86357878176068	2.61871995869807	2.62564892602131	-0.553280569000297	0.404997793556549	0.702044175820993
Merged-chr8-121931555-3	chr8	121931465	121931665	+	738.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007608, intron 2 of 6)	MTC|LTR|ERVL-MaLR	13347.0	NM_007608	12352.0	Mm.116761	NM_007608	ENSMUSG00000025317	Car5a	CAV|Ca5a|Car5	carbonic anhydrase 5a, mitochondrial	protein-coding	2.95948799297342	2.6970731341822	2.90544458876955	3.1281341386656	2.6365372409589	2.4612238806381	2.65260251708839	2.51782814842202	-1.89270963360679	0.0100935618123498	0.0794657268268161
Merged-chr2-122407723-6	chr2	122407576	122407776	+	794.236084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-33144.0	NM_172980	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	3.46177964025111	3.40854371079182	3.19131052808456	3.33441351520698	3.27689958394307	2.95566308254296	3.18013860657834	3.24863208518846	-0.659788356430014	0.240230658842425	0.550722344221875
Merged-chr12-104175832-3	chr12	104175742	104175942	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21970.0	NM_008458	16625.0	Mm.422814	NM_008458	ENSMUSG00000066361	Serpina3c	1A1|Kalbp|Klkbp|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3C	protein-coding	4.46873408120239	4.41440540374005	4.08411037547378	3.37818498877139	6.37393842755393	6.4665996413541	6.40827967136553	5.96587415385341	4.35202131997382	3.38378047828791e-30	4.30096626185812e-27
Merged-chr17-57285170-4	chr17	57285061	57285261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	6061.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	6.88314669160012	7.40141126328685	6.8981673171308	6.94819311563255	7.27340267329197	7.53286044110405	6.99425506986906	7.21084143926501	0.29309149930064	0.185725719646631	0.483585287292957
Merged-chr1-151353125-3	chr1	151353032	151353232	+	782.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039511, intron 5 of 7)	B2_Mm2|SINE|B2	8634.0	NM_001039511	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	3.82108158496028	3.7498557179954	3.37715635814053	3.68402006529591	3.67683281140844	3.7900718842296	3.75776393809079	3.6162907501459	0.121689620920675	0.798632500784513	0.922163759219727
Merged-chr5-76522176-4	chr5	76522057	76522257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7150.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	5.43928470358461	5.13514167150589	5.19687017031846	5.39295421553726	5.23699562082412	5.33993012281832	5.4129162420032	5.77354695967324	0.2638588615551	0.380386886933995	0.682812352787301
Merged-chr7-99134081-4	chr7	99133984	99134184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	7060.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	6.60074526512678	6.45251002593336	6.7588668988321	6.73566579404731	6.33313346231934	6.11726792578529	6.2801454440807	6.46931086705148	-0.496179197232677	0.0250473794606371	0.148644941022902
Merged-chr2-60881796-2	chr2	60881696	60881896	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141931)	promoter-TSS (NM_001141931)	-358.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	3.52966386648716	3.5844919130208	3.47358395928425	3.56899181528484	3.4826616184535	3.8532810883346	3.46066241720394	3.52822357696369	0.138881954595275	0.777092418301924	0.913034573074491
Merged-chr15-12322988-4	chr15	12322891	12323091	+	665.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025673, intron 1 of 3)	intron (NM_025673, intron 1 of 3)	1495.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	3.80998838425452	3.48709838470724	3.57276035856111	3.47886897913626	3.58547430444495	3.39032695022765	3.75050086300159	3.27846044534675	-0.231563277924434	0.655198309739636	0.855964328774641
Merged-chr12-73716035-4	chr12	73715934	73716134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 9 of 13)	intron (NM_008856, intron 9 of 13)	131238.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	6.79719080184503	7.11535822662854	7.17711153654536	6.80524451743898	6.40415989187642	6.34612094820081	6.47036031282524	6.6315010307742	-0.732836532950656	0.000809703801274439	0.0113524706643626
Merged-chr7-110006591-4	chr7	110006447	110006647	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037959)	promoter-TSS (NR_037959)	99.0	NR_037959	69781.0	Mm.440728	NR_037959	ENSMUSG00000101585	1600010M07Rik	-	RIKEN cDNA 1600010M07 gene	ncRNA	4.80634135610138	4.45960708219717	4.73553890512053	4.94792005555995	4.77587064687865	4.32286081956712	4.55805843287062	4.76866356169814	-0.280820569835566	0.450709073888755	0.735432148235471
Merged-chr6-72835336-1	chr6	72835236	72835436	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-46291.0	NM_009332	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	3.81243590086247	3.81636250267876	3.24780894321102	2.9257867519527	2.8895824589536	3.03057549163972	2.7502634682246	2.91390998185515	-2.48519771900271	0.000605293777357163	0.00900213242342363
Merged-chr5-24166294-4	chr5	24166201	24166401	+	891.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153092, intron 1 of 6)	RMER6A|LTR|ERVK	1338.0	NM_001346582	231042.0	Mm.45513	NM_153092	ENSMUSG00000048439	Nupl2	AV116043|CG1|NLP-1|Nlp1	nucleoporin like 2	protein-coding	4.57205421525918	4.66063420533508	4.28203872348553	4.39881350117044	5.20506994990651	4.70728262122875	4.89100685873458	5.20714253252224	1.12911555840112	0.00141605367821163	0.0178332067872303
Merged-chr3-16184680-4	chr3	16184558	16184758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172677, intron 2 of 5)	intron (NM_172677, intron 2 of 5)	1493.0	NM_172677	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	6.49918392442716	6.63440269968813	6.16413112880287	6.46023075378733	6.66014505061873	6.46320438965036	6.31096087880149	6.39333836362252	0.0255920586618113	0.911053163787617	0.966904162861598
Merged-chr3-59225592-3	chr3	59225484	59225684	+	770.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357010, intron 1 of 3)	intron (NM_001357010, intron 1 of 3)	-14702.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	3.73334371313015	4.13602664784482	3.9359642653303	4.02787354003777	3.85995248725057	3.61040704727963	3.66426558939575	3.8366753532637	-0.631553857170183	0.171994277543334	0.465252629537357
Merged-chr8-71668815-3	chr8	71668704	71668904	+	969.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 1 of 41)	intron (NM_001029873, intron 1 of 41)	2953.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	3.8199768016091	4.01449791326514	3.87935586346225	3.96183509799727	4.23331489238379	4.35977925966395	4.48611115102871	4.53997052097342	1.19771127149679	0.00317248517211788	0.0333305272422404
Merged-chr19-59073259-4	chr19	59073139	59073339	+	949.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 1 of 16)	intron (NM_001114312, intron 1 of 16)	2830.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	4.7734592865899	4.69299051078206	4.69853404694094	4.70628355609349	4.98532383910586	4.75101540235982	4.75164438584846	4.57299531820965	0.143186745205595	0.673098675113525	0.865589526337487
Merged-chr7-44374468-4	chr7	44374357	44374557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027049, exon 2 of 6)	5' UTR (NM_027049, exon 2 of 6)	573.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	6.88579024830355	7.19120509222333	6.66953914884125	6.93146597200412	6.89908991988988	6.84682440042119	6.79790729972019	6.78534625373236	-0.142736183279767	0.49046075123661	0.762224935512173
Merged-chr3-105050058-4	chr3	105049934	105050134	+	950.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	MTD|LTR|ERVL-MaLR	2919.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	4.49202890895377	4.62640555971001	5.03403396931141	4.78272465517215	4.56919064644262	4.140728685672	5.0929464221113	4.65794351795585	-0.187766268328487	0.647145664456735	0.851605116430591
Merged-chr13-112137773-4	chr13	112137646	112137846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-150705.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	5.18959639642371	5.40529389653717	5.12332776529291	4.98423550802303	5.49965245965923	5.29945682803476	5.50427964135061	5.25064647825433	0.410325793020567	0.168169506374557	0.460179995450643
Merged-chr11-61613806-2	chr11	61613706	61613906	+	847.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-34119.0	NM_001252189	13855.0	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	3.51516380412021	4.11584734065121	3.57372622195652	2.98049824031491	3.81759709224463	3.63490254153105	3.66713791223696	3.6806063056711	0.258085794943718	0.660610338351141	0.858992355066736
Merged-chr13-21974324-4	chr13	21974227	21974427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6854.0	NM_001162928	195236.0	Mm.204664	NM_001162928	ENSMUSG00000016982	Pom121l2	Gm24	POM121 membrane glycoprotein-like 2 (rat)	protein-coding	5.72754980478646	5.61222223396093	5.28874798430008	5.75114188027473	5.64987314975742	5.95159804673426	5.67456333327046	6.14214836893822	0.403721425626457	0.153856220982691	0.438808027941137
Merged-chr19-5837696-4	chr19	5837594	5837794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	7784.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	6.37617158572378	6.13387670211832	6.08886348796813	6.31177032772767	5.77422751925551	5.65720845381697	5.93045612899974	5.81438099358798	-0.692905804439738	0.00434683720062598	0.0427845009838883
Merged-chr18-32816789-4	chr18	32816684	32816884	+	883.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033206)	promoter-TSS (NR_033206)	-76.0	NR_033206	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	4.483293583258	4.25655693524882	4.48400137392481	4.50782534785678	4.50517569208817	4.91665194194622	4.42127907081405	4.48113875138382	0.336941005355202	0.368765851079497	0.673221351337215
Merged-chr5-100416300-4	chr5	100416184	100416384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026969)	promoter-TSS (NM_026969)	-50.0	NM_001359332	69162.0	Mm.18634	NM_026969	ENSMUSG00000035325	Sec31a	1810024J13Rik|ABP125|ABP130|AU042160|HSPC275|Sec31l1	Sec31 homolog A (S. cerevisiae)	protein-coding	8.38621508602804	8.06802841453432	7.9148438715145	8.13420601662104	8.21433093615405	8.25329979313448	8.26947208102364	8.20685513491291	0.126459509446663	0.449923381832423	0.734931131099492
Merged-chr19-8786328-4	chr19	8786245	8786445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177798)	promoter-TSS (NM_001177798)	-29.0	NM_146092	225895.0	Mm.220886	NM_146092	ENSMUSG00000003680	Taf6l	2810417N14Rik|BB223262|C530024J06Rik|Paf65a	TATA-box binding protein associated factor 6 like	protein-coding	7.73062108566756	7.88507475812133	7.47615426494618	7.64340992774212	7.80084140338148	8.04507216448158	7.70216524890566	7.32600793527818	0.0670926241738399	0.745284870782324	0.899471958747455
Merged-chr14-64842676-1	chr14	64842576	64842776	+	636.5	f0_balb.idr	intron (NM_177338, intron 6 of 9)	intron (NM_177338, intron 6 of 9)	107181.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	3.11029172056376	3.10100238589604	3.05161496826477	3.38341016570777	3.02287724372568	2.81290158022785	2.84864384287029	3.27109557193884	-0.702374683776106	0.260506407970443	0.572324359311071
Merged-chr5-66106596-4	chr5	66106497	66106697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	PB1D7|SINE|Alu	-8418.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	6.23226531065447	6.51512739248717	6.19487315178736	6.25127575575333	6.06273775097013	6.08899800885706	6.16318345092404	6.00115357657705	-0.345136251458001	0.134887557914298	0.408839148894254
Merged-chr2-46251755-4	chr2	46251652	46251852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur1|LINE|L1	555147.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	5.2233888927429	4.9856103021616	5.25433352925955	4.9742324968323	5.1021849041101	5.2026340187374	5.22824297949562	5.28000438086625	0.186599735388231	0.53527221122437	0.789648104016425
Merged-chr12-80924405-4	chr12	80924306	80924506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033786)	promoter-TSS (NR_033786)	41.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	6.01271702773517	6.30420856491639	6.51147141131979	6.55528824522284	6.35237692727415	6.14483863330288	6.56913015198208	6.26348247367371	-0.0459065427756627	0.851359825447607	0.94395961613626
Merged-chr4-134923576-4	chr4	134923467	134923667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023665)	promoter-TSS (NM_023665)	-58.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	7.71484050075417	7.82184380876646	7.22802006321078	7.27454996499326	7.80116797841337	8.17468901106011	7.84432320604755	7.75845641404635	0.485723763279631	0.0225409055151112	0.138709130289115
Merged-chr11-37043361-4	chr11	37043273	37043473	+	988.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99132.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	4.85529570323196	4.93779540996962	5.00691529865887	5.4343244531781	5.05197334988399	5.4637306071716	5.20846157294531	4.96750035677009	0.147525631704945	0.667559472277871	0.862535454941396
Merged-chr10-78160155-4	chr10	78160055	78160255	+	974.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9613.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	4.56984481686081	4.81854715333837	4.42926132389725	4.585814364	5.16346626837283	4.70475931483783	5.11348955115264	5.13574189066273	0.888311805108447	0.00937488154581356	0.0754090511413113
Merged-chr13-94387063-1	chr13	94386963	94387163	+	750.0	f0_balb.idr	intron (NM_009680, intron 1 of 26)	L1MD2|LINE|L1	28103.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	2.98840846174791	3.11708002861664	3.39074938023252	3.41588106204421	2.86100968274813	3.2276196270135	3.10582140563591	3.17486830810137	-0.597250270833169	0.318696444122826	0.630539142678577
Merged-chr9-72528230-1	chr9	72528130	72528330	+	792.666687	f0_balb.idr	intron (NR_045735, intron 1 of 2)	MTC|LTR|ERVL-MaLR	3628.0	NR_045735	75115.0	Mm.280755	NR_045735	ENSMUSG00000096986	4930509E16Rik	-	RIKEN cDNA 4930509E16 gene	ncRNA	3.3843269243546	3.15095397538521	3.19057371036186	3.22947245041897	2.52532503271418	2.62795435014233	2.88690813968053	2.682536892697	-2.9612020418326	0.000136884802141226	0.00264476746243494
Merged-chr15-89429955-4	chr15	89429854	89430054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_004843)	promoter-TSS (NR_004843)	-27.0	NR_037153	12651.0	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	7.79568612970072	7.91414075145614	7.62259553411506	7.86192318161825	7.93692469962699	7.95076241743595	8.17656456310653	7.71976621807504	0.193736355850889	0.278338701818277	0.590534970984105
Merged-chr8-105859605-2	chr8	105859505	105859705	+	835.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357229)	promoter-TSS (NM_001357229)	-928.0	NM_026532	68051.0	Mm.455474	NM_026532	ENSMUSG00000008450	Nutf2	2700067I02Rik|AI115459|AI413596|AW546000|Ntf2|Ntf3|PP15	nuclear transport factor 2	protein-coding	3.07214827950477	2.91544918557103	2.87222729909078	2.88228065153213	3.30954926453902	3.41459338745915	3.06146518128355	3.29763383780984	1.364264143336	0.0156342662615363	0.107999945480386
Merged-chr15-79441824-11	chr15	79441675	79441875	+	901.0985109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289899)	promoter-TSS (NM_001289899)	43.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	4.10855358703704	3.75807471744313	4.20117933085259	3.62844464409795	4.29021457274614	4.18696242208255	4.18201341810524	4.54519510668836	0.985637918907984	0.025693572789711	0.151181517533177
Merged-chr7-107594576-4	chr7	107594466	107594666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008905)	promoter-TSS (NM_008905)	-485.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	5.30843034398904	5.56599592525378	5.3093389637214	5.2002546355418	5.25447207523314	5.35783270745498	5.52810426106324	5.14458211703775	-0.035586325458849	0.904118361235744	0.964516711899835
Merged-chr15-97373973-4	chr15	97373868	97374068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172293, exon 5 of 6)	5' UTR (NM_172293, exon 5 of 6)	-126681.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	5.81423028964129	6.15366139108289	6.10986454047785	6.29985628657568	6.1892288477739	6.11294718405498	6.01684653773327	5.83636805804059	-0.109109815819383	0.664309161945612	0.860955946242955
Merged-chr3-127790529-4	chr3	127790442	127790642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356430)	promoter-TSS (NM_001356430)	-115.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	6.32590743433397	6.73796959228533	6.12134527417636	5.93657052581497	6.02246784827838	6.07778606504755	6.04881720854276	5.50370063012551	-0.580663964853199	0.0484283320282236	0.227185147659456
Merged-chr17-71144480-4	chr17	71144380	71144580	+	912.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39052.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	4.19035596921307	4.19907487193744	3.84433777019662	4.19574023253064	4.12966329734621	4.02131880757092	3.98787314794136	4.23098038219008	-0.0651080387282249	0.876334872849156	0.953507285608198
Merged-chr10-117792298-1	chr10	117792198	117792398	+	854.6666869999999	f0_balb.idr	intron (NM_134010, intron 1 of 27)	CpG	407.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	4.42508300795294	4.93730232957744	4.74432666135085	4.22242168417027	4.27967112545647	4.76784323991472	4.4923461704437	4.59190997495029	-0.144969754443392	0.722090601654308	0.889133228349902
Merged-chr5-86071769-4	chr5	86071665	86071865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019992)	promoter-TSS (NM_019992)	19.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	5.67530916027007	5.31396024482493	5.57460467327785	5.21733477889642	5.65338441637487	5.55116042430568	5.96653616649806	5.40111208247141	0.376447804328988	0.202774073411903	0.505320783254999
Merged-chr15-77839061-4	chr15	77838956	77839156	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	3119.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	4.64942426352904	5.15705009982145	4.16505467169986	4.56099166741833	4.96546264200592	4.74292016016994	4.84947249709698	4.7258048390169	0.29919320231772	0.451804860849783	0.736274971162294
Merged-chr11-103967350-2	chr11	103967247	103967447	+	986.0	f0_balb.idr|f0_c57.idr	5' UTR (NM_007477, exon 1 of 5)	5' UTR (NM_007477, exon 1 of 5)	476.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	4.50494438540177	4.48518613862671	3.95645840112896	4.30826015442136	4.8038244476776	4.41263672574788	4.77220745334115	4.54284197399088	0.714164485940517	0.0675811934984358	0.277487549408634
Merged-chr19-45060356-4	chr19	45060257	45060457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25A|LTR|ERVK	12781.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	5.98824807114651	6.44978998776256	5.85176337290224	6.15423323153866	5.78417525100854	6.05206799848346	5.43137558594001	6.0485034235399	-0.453487283580665	0.107902991534284	0.362455263540293
Merged-chr5-99381161-4	chr5	99381057	99381257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	RMER1B|Other|Other	-128230.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.8040602816964	6.0950316696657	5.48157130658026	5.80027570429817	5.73442568523249	5.95590220389697	5.93103046254303	5.53761820828431	-0.0327592037009246	0.905579505542992	0.964916319169902
Merged-chr4-116644481-3	chr4	116644355	116644555	+	835.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021473, intron 2 of 8)	B3A|SINE|B2	7219.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	2.65351872382653	2.71245028631049	2.71280258810024	2.56786194332824	2.54697223489289	2.40888499165173	2.51896167774053	2.52550630036655	-0.847022306622301	0.218815276528118	0.526132251694445
Merged-chr7-101385501-4	chr7	101385403	101385603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027180)	promoter-TSS (NM_027180)	-23.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	6.38756879812516	6.81612368805479	6.42216731944192	6.00702063947816	6.07240999254079	6.02582865906128	6.09413362672688	5.94203622798009	-0.60078935155079	0.0250631083856552	0.148664297928677
Merged-chr10-85871852-4	chr10	85871749	85871949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133993)	promoter-TSS (NM_133993)	18.0	NM_133993	103136.0	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog, endonuclein	protein-coding	6.17340549110879	6.32989727007903	6.13158363833005	6.25023900322844	6.59186450936616	6.84808496551536	6.55153350656666	6.469150727441	0.577320250311114	0.00851584104702162	0.0701809842582986
Merged-chr5-35584438-4	chr5	35584331	35584531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030721, intron 2 of 18)	intron (NM_030721, intron 2 of 18)	1397.0	NM_030721	80911.0	Mm.291503	NM_030721	ENSMUSG00000029098	Acox3	BI685180|EST-s59|PCOX	acyl-Coenzyme A oxidase 3, pristanoyl	protein-coding	6.32819888959315	6.678843307934	6.17286962688084	5.89795761147688	6.35691250268495	6.55918222286738	6.16177963495547	6.67525801548873	0.235696887234992	0.38205350939633	0.684226111802756
Merged-chr11-84513586-4	chr11	84513479	84513679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019816)	promoter-TSS (NM_019816)	-78.0	NM_019816	56321.0	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	7.34484924060661	7.39264909225228	6.76019084108136	7.07312582401494	7.54838632781833	7.23346666634126	7.12820716338131	7.42753074600528	0.249800342615222	0.254294117004462	0.565637196531453
Merged-chr1-52630689-4	chr1	52630588	52630788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142647)	promoter-TSS (NM_001142647)	-17.0	NR_024590	227094.0	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	7.11483585865804	6.70334793249171	6.92955164336923	7.22906564856686	7.17374828631374	7.07971711520392	7.34849929293138	6.95116723133934	0.177102207996066	0.408284045832444	0.704278459447095
Merged-chr2-45346564-4	chr2	45346466	45346666	+	880.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-229124.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	4.14539120997413	4.0707903241716	3.98316458969955	4.07192088772442	4.39160344413894	4.55328367987422	4.48048046386033	4.95014141896008	1.26521062500815	0.00139532620850787	0.0176158077678932
Merged-chr5-139388726-2	chr5	139388626	139388826	+	918.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	-1178.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	3.15851817290512	3.23910454910211	3.42510165352448	2.96494633545193	2.88020313075187	3.07881178633251	3.02472737057477	3.3232356273411	-0.463943992502963	0.439264404930643	0.727189882655551
Merged-chr3-95694591-4	chr3	95694498	95694698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6681.0	NM_001301705	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	5.58051597794526	5.46813670547982	5.66105988777	5.74313580789475	5.62296440364963	5.80961472138282	5.90612416833499	5.68252613503383	0.212594887960538	0.41873517248389	0.712053868847791
Merged-chr19-17364963-2	chr19	17364859	17365059	+	629.333374	f0_balb.idr|f1_balb.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	7885.0	NM_010265	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	3.65304684514393	3.63361710140052	3.49713981201181	3.40806022550233	3.39073108896129	3.29786909848147	3.68549170160101	3.54944328946931	-0.189343839071285	0.709341941031073	0.883484400788303
Merged-chr16-14361576-4	chr16	14361455	14361655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008576)	promoter-TSS (NM_008576)	-3.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	7.40206093572194	7.69289010990127	7.25507250574882	7.22186516246108	7.50880018590157	7.64854407144934	7.76392433889195	7.44714242060685	0.256509540384133	0.19174148663718	0.491174881537907
Merged-chr2-127831525-2	chr2	127831425	127831625	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009772, intron 1 of 24)	CpG	334.0	NM_001113179	12235.0	Mm.2185	NM_009772	ENSMUSG00000027379	Bub1	AL022991|Bub1a|C80208|D2Xrf87	BUB1, mitotic checkpoint serine/threonine kinase	protein-coding	3.35702464911486	3.3308036101232	3.24048115674071	3.15644040146833	3.22964454027798	3.58077967061469	3.39834994329572	3.29856059635599	0.40126145370516	0.445743939719441	0.731683604435051
Merged-chr11-114542322-3	chr11	114542220	114542420	+	986.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93460.0	NR_027643	319819.0	Mm.50754	NM_177008	ENSMUSG00000062391	4932435O22Rik	-	RIKEN cDNA 4932435O22 gene	ncRNA	3.43704875716169	3.05034794162012	3.50425156740521	2.76233840545594	4.38076193562059	4.07772377851095	4.14319675496493	4.31187019986216	3.46687663262615	2.42462314897008e-09	1.45271255151971e-07
Merged-chr18-34958726-8	chr18	34958623	34958823	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4372.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	4.01740602353109	4.34629495683522	4.17204644050017	4.24563668491265	4.40702989882001	4.48123408346347	4.05472375249806	4.57986577503651	0.452041126666612	0.261407448391323	0.573293822445797
Merged-chr1-167349322-4	chr1	167349245	167349445	+	986.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019993)	promoter-TSS (NM_019993)	-646.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	4.09676768732139	4.53367430678598	4.58327426185912	3.52125710281992	4.62357567778096	4.47204971923655	4.63170372373581	4.24609512142906	0.587450118150231	0.224380513696501	0.532727838038801
Merged-chr3-144982855-4	chr3	144982745	144982945	+	911.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-7800.0	NM_207208	99663.0	Mm.442050	NM_207208	ENSMUSG00000068547	Clca4a	9130020L07Rik|AI504701|Clca4|Clca6	chloride channel accessory 4A	protein-coding	4.31548914383599	4.18708603378827	4.69013456352657	4.85328581300091	4.3402968191741	4.44536282040957	4.73699325480133	4.65050793776721	-0.0149372085514411	0.970783038929885	0.98953696016025
Merged-chr6-97431736-4	chr6	97431622	97431822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	27564.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.86126337756183	8.07731840551042	8.36567006423954	8.08910439938635	7.7178224552329	7.76606482220849	7.66601335299468	7.84978198046387	-0.465485950031403	0.00870914870607481	0.071438619785843
Merged-chr5-129002791-4	chr5	129002698	129002898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152615, intron 1 of 11)	intron (NR_152615, intron 1 of 11)	5774.0	NR_152615	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	7.27583206759702	7.16277559861946	7.81793993095534	7.83331228703122	6.86323447541886	6.61943215679617	7.3988292632002	7.01479991958823	-0.753286072892996	0.00309744929004755	0.0327738065173026
Merged-chr2-162976080-4	chr2	162975974	162976174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081338, exon 23 of 23)	3' UTR (NM_001081338, exon 23 of 23)	-11407.0	NM_001291154	27219.0	Mm.26462	NM_013731	ENSMUSG00000017868	Sgk2	AI098171|AW146006|Sgkl	serum/glucocorticoid regulated kinase 2	protein-coding	5.80036411011487	5.23073934363355	5.20884729094385	5.36057001737029	5.58711670674894	5.42008297395023	5.43023025406949	5.68510895666387	0.211703850737736	0.474699064661155	0.751855589262771
Merged-chr6-82774541-4	chr6	82774439	82774639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013820)	promoter-TSS (NM_013820)	-85.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	8.86856458610256	9.06449361222961	8.92981942660182	8.98559849964402	8.76107809267411	8.83504061864355	8.77934015878991	8.49714160142053	-0.300078306754083	0.048777494707475	0.228266488874646
Merged-chr1-107481618-4	chr1	107481521	107481721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29802.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	5.89971140426611	6.10572538388742	5.73834073182604	5.8888248359904	5.60836728915769	5.33596094508158	5.57984097693803	5.82954441625207	-0.516536522587155	0.0543495855579236	0.243436197917992
Merged-chr11-5061910-4	chr11	5061798	5061998	+	813.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144560, intron 6 of 6)	CpG	3429.0	NM_144560	78926.0	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	3.89444839223759	3.68323653244611	3.52040138048896	2.98452081414974	3.73908347102732	3.26023185823871	3.33386123901553	3.34434411403034	-0.405355019181793	0.505707544315205	0.771556252339237
Merged-chr5-134184511-4	chr5	134184405	134184605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359852, intron 1 of 14)	CpG	467.0	NM_053266	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	7.13070154654604	7.52255472062258	7.22641252613414	6.99823208345098	7.73807914168414	7.948185548759	7.51756219191835	7.34059423705004	0.569889624529751	0.00837148893638022	0.0692957565999078
Merged-chr4-150586423-3	chr4	150586314	150586514	+	915.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	65760.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	3.74085940580399	3.60380016630372	3.63160140538402	4.24930235881763	4.12212398648971	3.56279361703872	3.61808605982862	3.73928573607172	-0.174223684600143	0.744965955764983	0.899430612592583
Merged-chr6-16889644-4	chr6	16889576	16889776	+	997.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 1 of 6)	intron (NM_031198, intron 1 of 6)	8765.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	5.26233624443202	5.13274949723307	5.7485359873724	5.73877437130001	5.13028101028188	5.12694249508378	5.10708743413621	5.16258946199411	-0.687038478255638	0.0307374535360542	0.170036621220393
Merged-chr11-51263537-3	chr11	51263468	51263668	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358279)	promoter-TSS (NM_001358279)	94.0	NM_001358281	193286.0	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	4.41957503398766	4.62743144225226	5.24223348489781	4.86650579435649	4.71067783124098	4.98075062837506	4.40113297478149	5.15725263998306	0.0309295051072949	0.938709017481851	0.977759950372676
Merged-chr1-155417474-4	chr1	155417357	155417557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011273)	promoter-TSS (NM_011273)	-13.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	8.09420190392291	8.1233653157769	8.24095582815576	8.02003965306368	8.31362309071848	8.32329192710047	8.07616160065123	8.03773850219108	0.101380452029621	0.538640496055248	0.791679929829652
Merged-chr9-123942224-4	chr9	123942153	123942353	+	957.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26439.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	4.90443385683679	5.01877517071182	5.30796651842366	4.93459337216474	4.71670135787426	4.58645529714285	4.8816577266723	4.45623851887879	-0.773106131642933	0.0272484565481536	0.157283389905517
Merged-chr3-159495391-4	chr3	159495298	159495498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029523)	promoter-TSS (NM_029523)	-35.0	NM_029523	76131.0	Mm.371655	NM_029523	ENSMUSG00000028175	Depdc1a	5830484J08Rik|Depdc1	DEP domain containing 1a	protein-coding	8.05339213095239	7.82256820070405	7.99991175586236	8.40898021029687	8.37076139095953	8.14933112527426	8.55592653550721	8.28661194192076	0.319936482347593	0.0977753135463307	0.342581788969445
Merged-chr10-26373116-4	chr10	26372996	26373196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172787, intron 1 of 21)	intron (NM_172787, intron 1 of 21)	976.0	NM_001359255	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	5.21202161390439	4.97688804761963	5.21290387198105	5.52989095530137	5.57753307866749	5.14120402609053	5.62142486794475	5.36282185804812	0.319023628218163	0.313376538463175	0.625250977751096
Merged-chr1-121307324-3	chr1	121307232	121307432	+	687.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271532, intron 2 of 4)	intron (NM_001271532, intron 2 of 4)	20346.0	NM_001271531	72999.0	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	3.65600060886563	3.36728216414688	3.76338682722544	3.88882285249803	3.46714941919144	3.98390651084821	3.93570014175798	3.85974004126705	0.38028155998436	0.454850602411688	0.738572565672132
Merged-chr10-75289607-3	chr10	75289507	75289707	+	835.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-27270.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	3.29264746155578	3.65846803924257	3.35215940738617	3.35718278186082	3.76342706674191	3.27707034609388	3.28145759898629	3.16487063831536	-0.0563515389385581	0.92098311626123	0.97071991400163
Merged-chr16-91376839-3	chr16	91376740	91376940	+	994.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	4057.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	4.63512349172364	4.25673150612136	4.73527813841044	4.53029492587593	3.75596827913476	3.91301650200874	4.38919968955689	4.27692095551003	-1.08824672921591	0.0137156008491638	0.0985725719752255
Merged-chr17-5800569-4	chr17	5800482	5800682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045080, intron 1 of 1)	intron (NR_045080, intron 1 of 1)	1092.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	5.42453942266049	5.98007193459648	5.82751283792983	6.48158027738174	5.85342156542813	5.92889733037851	6.08205098969922	6.18531034048732	0.0111778736273555	0.971313178881761	0.989667458652484
Merged-chr9-100876150-4	chr9	100876061	100876261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009282, intron 14 of 33)	intron (NM_009282, intron 14 of 33)	158723.0	NM_001311149	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	5.56805087314105	5.20626639985141	5.84787834548534	6.01856582146433	5.07446612220216	5.3551111654447	5.21887702963715	5.484557903218	-0.736760492300833	0.0222929543451423	0.137673172681172
Merged-chr17-44710069-4	chr17	44709974	44710174	+	969.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271627, intron 4 of 7)	intron (NM_001271627, intron 4 of 7)	26102.0	NR_073425	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	5.53375536146499	5.29846184312098	5.67915161832838	5.63254654348742	5.1118290741882	4.93485830659377	5.60404952557583	4.92098465539531	-0.663970700197559	0.0399968213500604	0.201781398176763
Merged-chr15-79883471-4	chr15	79883356	79883556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8952.0	NM_001160415	80287.0	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Gm20117|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	6.08250005224702	6.34951881047627	5.93052663767062	5.88606889090305	5.77543945117847	6.08369389001389	6.32697177751637	5.97191431313672	-0.0345809260110365	0.896200500472913	0.961021052504768
Merged-chr8-11471524-4	chr8	11471436	11471636	+	886.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	L1M2|LINE|L1	-6393.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	4.31289190218302	3.9732018716962	3.76149007765222	4.18374995263513	4.372247385477	4.16570147857349	4.07358992315774	4.4274655320163	0.477264814653464	0.266116283568092	0.577866650846371
Merged-chr5-64804185-4	chr5	64804095	64804295	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	CpG	672.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	4.76381546249743	4.77814475940029	5.00548825118798	4.69355674175654	4.81798556690936	4.69253663024628	4.58241266193877	5.00204105101246	-0.041971180317094	0.902298659916309	0.963741785300085
Merged-chr4-152165434-8	chr4	152165349	152165549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6582.0	NM_008236	15206.0	Mm.57038	NM_008236	ENSMUSG00000028940	Hes2	HES-2	hes family bHLH transcription factor 2	protein-coding	4.81021968708509	4.88708007855804	4.5994994356999	4.82815782987433	4.9279733001556	5.23069803144616	5.21201894410956	5.11805707068215	0.643408515259542	0.044935686340491	0.216654962949929
Merged-chr10-44474416-4	chr10	44474312	44474512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15664.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.17339554489035	6.14771993513545	6.32194725515199	6.22311554919226	6.1402250879581	5.76963994522447	6.19993818705349	6.08934740417023	-0.231628768334869	0.327616223636594	0.639080138733018
Merged-chr9-57539649-2	chr9	57539549	57539749	+	918.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166364, intron 4 of 4)	intron (NM_001166364, intron 4 of 4)	2121.0	NM_001166364	78323.0	Mm.25814	NM_175273	ENSMUSG00000032305	Fam219b	2310046O06Rik|AI594866	family with sequence similarity 219, member B	protein-coding	2.36072211576967	2.27373230386036	2.07297686566948	1.78708709255407	2.18322734343191	2.40178254549952	2.35155694946615	2.35972297861075	1.07741509766479	0.259318760344303	0.57116292954269
Merged-chr3-88745159-4	chr3	88745073	88745273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018804, exon 4 of 4)	3' UTR (NM_018804, exon 4 of 4)	27426.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	5.09472954224005	5.47404573062229	5.27990568715014	4.74233603187435	5.44025340835716	5.16833896442104	4.93218148313485	4.57102801596853	-0.17208835202346	0.652473947242616	0.854679752862257
Merged-chr11-63093607-4	chr11	63093530	63093730	+	955.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027660, intron 7 of 7)	intron (NM_027660, intron 7 of 7)	31971.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	4.01347895068854	3.99616294687844	4.45358931508827	4.41365660183451	4.18520174444336	4.02757746430188	4.46855705293014	4.01176523652684	-0.140537939098795	0.746359064163705	0.900074408757744
Merged-chr11-67604614-4	chr11	67604523	67604723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109657, intron 2 of 13)	intron (NM_001109657, intron 2 of 13)	8068.0	NM_001277079	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	5.51973476973265	5.60539598904023	6.07080746238367	6.12117992675242	5.95484098160499	5.57522201020557	5.87521089909667	5.78551549350825	-0.0955017803058593	0.739174323771265	0.897175752194117
Merged-chr10-79767054-4	chr10	79766945	79767145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027505)	promoter-TSS (NR_027505)	-93.0	NR_027505	70294.0	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	7.96858063783005	7.93344060780845	8.10284083428223	7.92399939870455	8.05116193730324	8.25462914979876	8.19552236014843	8.15895499794904	0.235640286809193	0.134755664474085	0.408602721099257
Merged-chr10-26375969-4	chr10	26375862	26376062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172787)	promoter-TSS (NM_172787)	-743.0	NM_172787	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	4.8111874062402	5.10764341944457	4.9982501123413	4.8077212689027	4.99693979442382	5.10183921116577	5.25068910016519	5.15720588687462	0.378760679330077	0.225993787127268	0.534596602656423
Merged-chr8-22139877-3	chr8	22139793	22139993	+	758.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011848, intron 11 of 15)	intron (NM_011848, intron 11 of 15)	-14826.0	NM_001347318	330721.0	Mm.113940	NM_177898	ENSMUSG00000037738	Nek5	6530411J22|BB049667	NIMA (never in mitosis gene a)-related expressed kinase 5	protein-coding	2.90571108806758	2.96749381340833	2.95993673885979	2.68078433783558	2.36049141054873	2.39083054715466	2.36623177610959	2.72827999192274	-2.36490228431276	0.00360517921716949	0.0369068102256447
Merged-chr6-149261039-4	chr6	149260908	149261108	+	836.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48406.0	NM_001289661	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	4.33392393819978	4.87731661823798	4.56062517736796	4.10442719334868	4.47155594174747	5.36699443675937	4.31537857517744	4.5154547668373	0.503873551526739	0.270975151952933	0.58272879364506
Merged-chr2-75613303-4	chr2	75613203	75613403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45956.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	5.21264748803525	5.39035976417783	5.21352627304401	5.31152411347177	5.81978821370649	5.94881499480622	5.62813190512194	5.92129448912521	0.922310040766579	0.000569305600909865	0.00856714658925229
Merged-chr2-29661915-4	chr2	29661830	29662030	+	996.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	42210.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	5.67397390984244	4.98181008694668	5.11030639513128	5.67398905131106	5.44352018660156	5.64161238585203	5.71552770684626	5.64673402093101	0.341504242392345	0.284954939573534	0.596719806311822
Merged-chr9-124068297-3	chr9	124068198	124068398	+	936.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33885.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	4.08225611550993	4.18240341346973	4.03502871504699	4.46722965908147	3.76595650300752	4.29922707499981	3.80937182428117	3.93147523409499	-0.676997682077473	0.135862119944166	0.410253303460174
Merged-chr5-123344411-4	chr5	123344328	123344528	+	849.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029850)	promoter-TSS (NM_029850)	-20.0	NM_029850	77045.0	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	3.76746235792529	3.53242703565475	3.66263371410147	4.04123079298097	3.81995241032871	3.39768116225847	3.84861455799266	3.90890577540704	-0.0483556607775115	0.924237387329431	0.971949015831349
Merged-chr3-19627252-4	chr3	19627158	19627358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17202.0	NM_001081281	381485.0	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	7.39953042086382	7.27189014293854	7.56743531471012	7.71220121079572	7.48522674209144	7.30274219568317	7.26164294302019	7.55356261772699	-0.131095534241405	0.500478123253321	0.768850577358824
Merged-chr4-107923625-4	chr4	107923501	107923701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009949)	promoter-TSS (NM_009949)	-12.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	8.52816662522386	8.64831864855938	8.33160029788339	8.2021417564783	8.25151013922463	8.41808281424396	8.46171562664801	8.05036846810926	-0.165954278289683	0.361555081698395	0.666799563679493
Merged-chr6-29848962-4	chr6	29848821	29849021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	RSINE1|SINE|B4	-4820.0	NM_001347084	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	5.13579216078639	5.00972518004564	5.10576824859089	4.91800544733364	4.81494451440144	5.18097759349967	4.68309230118819	5.00482677718272	-0.213681092440835	0.513285200898918	0.776401540998876
Merged-chr2-181601263-4	chr2	181601167	181601367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133701)	promoter-TSS (NM_133701)	-52.0	NM_133701	68879.0	Mm.292001	NM_133701	ENSMUSG00000002455	Prpf6	1190003A07Rik|2610031L17Rik|ANT-1|U5-102K	pre-mRNA splicing factor 6	protein-coding	7.54308431114009	7.81952235443678	7.51642292342034	7.50640880439495	7.75007698095714	7.55482692350175	7.71800391404128	7.95117790754229	0.198307135245307	0.278469627393123	0.590637075247031
Merged-chr9-70841193-4	chr9	70841086	70841286	+	949.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	93622.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	4.47054330888167	4.68394377502792	4.511358726578	4.20492203207676	4.23332326490709	4.27586932769909	4.60232821968072	4.34009479434565	-0.233871561688594	0.554417306684122	0.80074000106465
Merged-chr16-10962244-4	chr16	10962140	10962340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 3 of 3)	intron (NM_019980, intron 3 of 3)	30881.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	5.54748040051394	5.68612795311422	5.31748943594956	5.65558450430501	5.64108221273339	5.32741958002978	5.49405553426872	5.21530638839595	-0.220253112779801	0.444956160776099	0.73115209509395
Merged-chr17-34251811-4	chr17	34251706	34251906	+	779.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11421.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	3.53476660002895	3.45604760875521	3.14998585459439	3.49154873332197	3.62839794951871	3.59460726639344	3.77081073246322	3.91555159462156	0.977891337055746	0.0538781204190029	0.242276248234519
Merged-chr9-14698113-4	chr9	14698047	14698247	+	858.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	35125.0	NR_152172	665374.0	Mm.387249	NR_152172	ENSMUSG00000111085	Gm7607	EG665374	predicted gene 7607	ncRNA	3.80264503316186	3.81256518114513	3.8601151000198	3.84299774640253	4.07554755189659	4.19242272812357	4.66808762234214	4.11059893477112	1.17246654037988	0.00705492955722594	0.0612095113303004
Merged-chr1-131366070-4	chr1	131365965	131366165	+	870.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	ORR1E|LTR|ERVL-MaLR	-86502.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	4.48212028813192	4.69674765979917	4.48285623840264	4.00334757391709	4.12046002288626	4.30700801441083	4.29882480674845	4.02201684184022	-0.583326548075889	0.175953848171748	0.47081759930141
Merged-chr15-78810343-4	chr15	78810204	78810404	+	985.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	-7262.0	NM_130859	105844.0	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	4.36247971680509	4.71973610740714	4.2668033531884	4.58070999872328	4.38656312517367	4.62667904327517	4.86435126824835	4.4060422821916	0.171014937427889	0.658194617653771	0.857706321445165
Merged-chr7-16396147-3	chr7	16396048	16396248	+	795.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5048.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	2.89978039588738	3.21380996779396	3.10562349148973	3.34521192077215	3.25529525169662	3.33853070729424	3.21496189741257	3.43768826007659	0.547531757404584	0.34129467001815	0.650397936259321
Merged-chr10-115383791-4	chr10	115383658	115383858	+	866.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025780, intron 1 of 2)	intron (NM_025780, intron 1 of 2)	677.0	NM_025780	66816.0	Mm.32314	NM_025780	ENSMUSG00000020137	Thap2	2900040O07Rik|9030625G08Rik|AI450385|AI649097	THAP domain containing, apoptosis associated protein 2	protein-coding	4.1269768487888	4.48388068023958	4.26489585478331	4.56240991214605	4.14971788984048	3.8577550762058	4.1569681226979	4.12513673065492	-0.755561677051325	0.0718409571700837	0.287919452641609
Merged-chr2-84622975-4	chr2	84622907	84623107	+	980.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355067, intron 1 of 15)	intron (NM_001355067, intron 1 of 15)	26473.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	5.82976580550132	6.52092420594751	6.52635256960162	6.09265147407748	5.67850419651324	5.95904543449796	5.64624376647609	5.09241879300977	-1.02445729419716	0.00114006128417216	0.0149554777268873
Merged-chr7-121981023-4	chr7	121980930	121981130	+	838.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033318, intron 1 of 16)	intron (NM_001033318, intron 1 of 16)	663.0	NM_001033318	233824.0	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	3.98240973837424	3.54502897137643	3.73081887968639	3.58321891937734	3.88454550795615	3.90651476482467	4.13433331282141	4.02545844083396	0.799381083853732	0.0778115288099671	0.301658982136941
Merged-chr4-126609817-4	chr4	126609731	126609931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145950)	promoter-TSS (NM_001145950)	-23.0	NM_001013755	230757.0	Mm.296838	NM_001013755	ENSMUSG00000073755	5730409E04Rik	7530403E16Rik|AI849033	RIKEN cDNA 5730409E04Rik gene	protein-coding	6.83397323456228	7.14828939322366	6.9304771471834	6.86786819510222	6.94946935164762	6.76390747892334	7.16476463028894	7.16367308165393	0.0995005281497379	0.627982191218714	0.841395659082482
Merged-chr1-173694487-4	chr1	173694436	173694636	+	910.8875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162938, intron 5 of 6)	ERVB2_1-I_MM-int|LTR|ERVK	20856.0	NM_001162938	100033459.0	Mm.303377	NM_001162938	ENSMUSG00000066677	Ifi208	9830148g24rik|E430029J22Rik|NG2creBAC|Pydc3|Pyr-rv1|Tg(Cspg4-cre)1Akik	interferon activated gene 208	protein-coding	4.6237553649378	4.04682018530473	4.30687308621519	4.26609192427124	4.46422164683413	4.29076392156273	4.63638003300084	4.21084957584876	0.221161563322717	0.583400041117967	0.817115929294289
Merged-chr9-79785181-4	chr9	79785085	79785285	+	778.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133718, intron 1 of 6)	L2|LINE|L2	8245.0	NM_133718	69981.0	Mm.486324	NM_133718	ENSMUSG00000032328	Tmem30a	2010200I23Rik|AW540225|Cdc50a|D9Wsu20e	transmembrane protein 30A	protein-coding	3.65588480800296	3.47092188305318	3.28759867799926	3.67094347381872	3.60606316480694	3.53860331694301	3.92547754818718	4.13865648335576	0.856183612412586	0.0991960552097504	0.345383554946672
Merged-chr5-120509024-4	chr5	120508919	120509119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2173.0	NM_001177595	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	5.56234135706563	5.77791579050191	5.47978816429226	5.44216861736812	5.49337375496756	5.40537215402956	5.86292247395022	5.6121130639724	0.0623287409348455	0.823723801384463	0.932387119655244
Merged-chr5-121721985-4	chr5	121721872	121722072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	Tigger15a|DNA|TcMar-Tigger	10363.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	6.55880739632169	6.85189418060688	6.70372617625532	6.92199262593723	6.78310716709172	6.98131257828052	6.71390528338673	6.77222213816784	0.0478660789860668	0.817680889190048	0.929981783742416
Merged-chr10-70040474-4	chr10	70040367	70040567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56654.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	5.40543118200456	5.09992838708198	5.21084608742352	5.74464878061301	5.84537154840244	5.52173065357371	5.69635156669028	5.85492105234356	0.552532327139407	0.0718159941483826	0.28789488040294
Merged-chr10-87839628-4	chr10	87839525	87839725	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18640.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	4.94775915750918	5.25274375558889	5.14658693729934	5.27957513257727	5.00072585146018	5.15741756914898	4.69277001585509	4.52850512646821	-0.58315401455694	0.0889308682210054	0.325383482528166
Merged-chr2-44926437-1	chr2	44926337	44926537	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-64815.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	5.116358082405	5.38607548196192	5.08475152721778	4.82539113336365	5.15467613355412	5.19143445050477	5.02685168305181	4.74519416961104	-0.121296302690255	0.718212903569564	0.887436660472485
Merged-chr17-35174656-4	chr17	35174553	35174753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019467, intron 1 of 7)	MER21C|LTR|ERVL	1399.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	6.26607608737692	6.85581284197816	6.10042459684946	5.91592407844896	6.70763775252053	6.69036239996944	6.43246392897485	6.1820969897547	0.282419677934244	0.328463974344661	0.639942128100059
Merged-chr7-4067295-4	chr7	4067192	4067392	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4088.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	5.24710688678228	5.35469757384368	4.95464093800267	4.99855984998644	5.27465633821772	5.26679224535162	4.77687763936172	4.79597599827493	-0.162899450211978	0.6308719420538	0.843094226067586
Merged-chr3-19011647-4	chr3	19011546	19011746	+	905.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	151449.0	NM_028840	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	3.74928365435989	3.97066990575031	4.29238098163839	4.03838617447108	5.26993992072975	4.77988234636217	4.9526227586361	4.94501029087946	2.16846282120532	4.89693097803133e-08	2.24500622464063e-06
Merged-chr11-73084523-3	chr11	73084420	73084620	+	957.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025818)	TTS (NM_025818)	-6063.0	NM_001361245	16407.0	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	4.13459944650057	3.95273271418679	3.87933352678299	4.10936116663592	3.67223764524139	3.47928249619836	3.2832218158562	3.61584334875748	-1.53317487813834	0.00250726773586336	0.0278199236431829
Merged-chr6-32328243-3	chr6	32328047	32328247	+	779.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-182994.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	3.15142730605322	3.17552193678807	3.09468292568923	2.83947709807808	3.03954219562051	3.01448665460316	3.02406699018581	3.09305385404791	-0.0780159702662056	0.893670616602091	0.960319159696255
Merged-chr10-24493875-4	chr10	24493766	24493966	+	940.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101576.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	3.68810923585756	3.7719032981518	3.97049147880276	4.07528317038053	4.12307116090881	4.14437591680758	4.22436384383898	4.39515305807165	0.839475610849732	0.0547878385787473	0.244482700908824
Merged-chr12-21266711-3	chr12	21266638	21266838	+	870.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004364, intron 26 of 26)	intron (NM_001004364, intron 26 of 26)	19546.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	3.01813570696441	3.46508091872431	3.24378352259958	3.13705076647996	2.92216235200864	2.92737856153291	2.66348912364967	2.88806456810151	-1.615902159949	0.0135933997402954	0.0979911484823256
Merged-chr19-8820548-2	chr19	8820448	8820648	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081196, exon 1 of 14)	exon (NM_001081196, exon 1 of 14)	1147.0	NM_001081196	68693.0	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	5.0980630617054	5.19451958139525	5.34316548414868	4.91008942043481	5.29560966173997	5.27339183436592	4.8952933015484	5.282713020996	0.130266855630462	0.680201200789927	0.868698483349951
Merged-chr9-107231806-4	chr9	107231707	107231907	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153413, exon 1 of 53)	5' UTR (NM_153413, exon 1 of 53)	102.0	NM_153413	208869.0	Mm.150259	NM_153413	ENSMUSG00000039716	Dock3	MOCA|PBP|mKIAA0299	dedicator of cyto-kinesis 3	protein-coding	3.92183089846913	3.86620218042462	4.43561912799887	4.17557095749594	4.00752633345692	4.14730569784732	3.90651890575565	3.97169497584886	-0.291650264170566	0.50736029009669	0.772710503440438
Merged-chr16-84955631-4	chr16	84955521	84955721	+	959.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 15 of 15)	intron (NM_001198825, intron 15 of 15)	-16590.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	4.57539290047756	4.3812191382364	4.53163402372263	4.44539606023328	4.86661741619514	4.79688215687114	5.47003204949224	4.91661533165891	1.1538148189897	0.00132920108045073	0.0169493378189542
Merged-chr8-123332888-4	chr8	123332779	123332979	+	760.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172287, exon 1 of 15)	exon (NM_172287, exon 1 of 15)	166.0	NM_172287	234857.0	Mm.150200	NM_172287	ENSMUSG00000010154	Spire2	BC026502|Spir-2|Spir2	spire type actin nucleation factor 2	protein-coding	4.12211345458001	4.06417646276731	3.71304676452138	3.96002934600803	3.81016599294741	4.29162519232339	4.10416119967556	3.8798653087972	0.145763093915648	0.744560492670194	0.899296531468148
Merged-chr17-17870411-1	chr17	17870311	17870511	+	665.333313	f1_c57bl6.idr	Intergenic	ZP3AR|Satellite|Satellite	13528.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	2.39637198058774	2.26132488235776	2.39661964680364	2.08941967194406	2.36988809963083	2.85231374368133	2.83982428761027	2.95740812206918	2.81632628962247	0.000312487291342443	0.00523970151012102
Merged-chr10-42153032-3	chr10	42152931	42153131	+	961.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123711.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	3.64764448151026	3.85159507361858	3.75266396225974	3.89538273894233	3.70357981737377	3.58784040451343	3.83259179190967	3.53326754885465	-0.386166505591913	0.411762483646863	0.707123186245418
Merged-chr8-86873284-4	chr8	86873178	86873378	+	987.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	11980.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	5.43320321064072	5.32769423165103	5.31839462284335	5.14429116095394	5.59859290467353	5.55104990134585	5.23045534836139	5.22050708857629	0.218088387262657	0.458631585698672	0.74144172337427
Merged-chr6-134220447-4	chr6	134220376	134220576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	-175853.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	7.39097736231608	7.35318936994217	7.82944705648401	7.46581037278386	7.53575320245992	7.64744891106417	7.22896191580857	7.4556454803395	-0.0586616818357406	0.768403465288245	0.909356419531329
Merged-chr1-184628964-3	chr1	184628880	184629080	+	688.849976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-71289.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	3.91707020485923	3.67392478626399	3.52416934503369	3.6063230357528	3.668919742144	3.5179916229484	3.45299115043113	3.68423968593839	-0.298998425960649	0.540827014577184	0.792982745230616
Merged-chr18-30503946-3	chr18	30503874	30504074	+	880.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	231109.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	3.4241064386851	3.40473491579026	3.77625154569347	3.53740786502639	3.85283705099855	3.35076745675229	3.22845438171506	3.36373528987811	-0.184924363304239	0.739418973599521	0.897284218525646
Merged-chr5-146772168-4	chr5	146772076	146772276	+	980.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	22780.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	4.74623185495176	4.94422896395373	4.82429716246048	5.01487988485361	5.00265233431278	5.06919257202051	4.87408143169696	4.74394334439758	0.062507845847013	0.848098448349878	0.942612651933043
Merged-chr2-3512181-4	chr2	3512080	3512280	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177647)	promoter-TSS (NM_177647)	634.0	NR_103465	50497.0	Mm.89341	NM_015765	ENSMUSG00000051396	Hspa14	70kDa|HSP70L1|Hsp70-4|NST-1|hsr.1	heat shock protein 14	protein-coding	5.65675580947247	6.47756156183556	5.45595906486356	4.81396397922565	6.08813487347255	6.05357097732898	5.93369663776053	5.45211017840241	0.237446495283743	0.680408788127885	0.868886456682011
Merged-chr9-111046393-4	chr9	111046292	111046492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	10852.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	7.28028093265109	7.36405272673701	6.87800500450411	7.04500560620943	7.13190967609741	6.87609835748851	7.21445643686054	6.83044420046709	-0.171996587509107	0.419650773658531	0.712742428076083
Merged-chr4-48044355-4	chr4	48044244	48044444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015743)	promoter-TSS (NM_015743)	-961.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	5.37933059958158	4.8669503813784	4.94464154315987	5.63045468505171	5.14493736553252	5.3402921217513	5.58416907489902	5.48512431046535	0.233244702234784	0.49990757290371	0.768546213346145
Merged-chr7-126429062-4	chr7	126428944	126429144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030566, exon 1 of 13)	5' UTR (NM_030566, exon 1 of 13)	277.0	NM_030566	70314.0	Mm.35467	NM_030566	ENSMUSG00000030727	Rabep2	2610011A08Rik|AI462746|Fra	rabaptin, RAB GTPase binding effector protein 2	protein-coding	6.0826831256686	6.21977638033045	5.57015219624622	6.35194205879618	6.53614212859109	6.64195574674752	6.65786901080243	6.71457694197416	0.780989848160972	0.00236361054557931	0.0265823092153247
Merged-chr18-7703695-3	chr18	7703578	7703778	+	870.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76815.0	NM_001161620	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	2.73266420692283	2.59360591167718	2.80516484172627	2.51198454578401	3.34209157295847	2.98596218244662	3.25954722681546	3.22270364454834	2.57816940709512	4.12660698629907e-05	0.000958328739568618
Merged-chr8-64850011-4	chr8	64849912	64850112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178633)	promoter-TSS (NM_178633)	-88.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	6.55471036568701	6.55518070012854	6.77100397372293	6.91757286069993	6.55021223845132	6.93300922151917	7.11032016667992	6.37158004861722	0.0748431139290252	0.762198748491707	0.906834880352543
Merged-chr11-24079696-2	chr11	24079596	24079796	+	668.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159290)	promoter-TSS (NM_001159290)	-999.0	NM_001159290	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	3.03636289807107	2.87522461132129	2.9192268450356	2.92036230869082	2.7564261490432	2.96420314263998	2.64063646101955	3.14246715552689	-0.220904523847555	0.727024243489618	0.89133085313418
Merged-chr9-72660334-4	chr9	72660234	72660434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1997.0	NM_010890	17999.0	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|EG639396|Gm7265|KIAA0093|Nedd4-1|Nedd4a	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	6.52651219252773	6.59308256281493	6.60698643876777	6.50930793049592	6.95011024521191	6.3703271833153	6.28172931227992	6.4028837369783	-0.013671341021278	0.955072291831013	0.983997312788949
Merged-chr17-26931941-4	chr17	26931825	26932025	+	873.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053173, intron 10 of 10)	intron (NM_053173, intron 10 of 10)	-1202.0	NM_001302397	21652.0	Mm.258953	NM_009343	ENSMUSG00000024193	Phf1	AW557215|D17Ertd455e|Pcl1|Phf2|Tctex3	PHD finger protein 1	protein-coding	4.18839419770098	4.35021248876689	4.09145291405208	3.79799384712004	4.54564618220031	4.31597043409992	4.30306050719304	4.3200771611653	0.675435499083019	0.102963792315286	0.352382910530326
Merged-chr5-105595367-3	chr5	105595277	105595477	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	75906.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	4.33424294091803	5.12978555422013	4.53473863392357	4.5261753933944	5.01950280709246	5.17097893644556	4.76479805942434	5.20419886030608	0.764196010568136	0.0429370030864269	0.210816923686885
Merged-chr19-9938320-3	chr19	9938234	9938434	+	939.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38801.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	3.32442026104044	3.47322022126481	3.10255590968863	3.29274755736444	3.1946564482808	2.94086825664259	2.82750066395963	2.97389918046536	-1.23322192054458	0.0467186766609118	0.222225921280877
Merged-chr1-171915881-5	chr1	171915836	171916036	+	910.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151536, intron 1 of 2)	RMER15-int|LTR|ERVL	-1526.0	NM_030710	30925.0	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	4.30325284289766	4.70394416774065	4.69514805215131	3.84019270267737	4.84541679039041	4.23497618138814	4.0362682137046	4.15649100969797	-0.140757529041998	0.773795502325309	0.911660846809785
Merged-chr7-43685557-4	chr7	43685446	43685646	+	874.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4872.0	NM_174866	317653.0	Mm.247377	NM_174866	ENSMUSG00000044737	Klk14	GK14	kallikrein related-peptidase 14	protein-coding	4.84531558965418	5.09078248999114	4.84612156379362	5.19443300732604	4.49970571925725	5.05385818753909	4.35562250281384	4.56298810032582	-0.779354734741044	0.0353232496905734	0.18644965441048
Merged-chr3-20005812-4	chr3	20005697	20005897	+	957.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276250, intron 19 of 19)	intron (NM_001276250, intron 19 of 19)	29513.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	4.60881055238332	4.48840405436067	4.80253553603766	5.19752942837681	4.88645959588013	4.40954583588091	4.81455423913448	4.60659433788349	-0.2564994403283	0.514127369798594	0.776902467989904
Merged-chr9-60181053-4	chr9	60180945	60181145	+	893.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040426, intron 7 of 17)	intron (NM_001040426, intron 7 of 17)	-39825.0	NM_172444	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	5.02506763965006	4.57499447528943	5.35075545142442	5.2147190690817	4.26992581716973	4.48086167777614	4.76495117310811	4.44563905888689	-1.21818149708927	0.00167558682904901	0.0203529264466129
Merged-chr14-27186160-5	chr14	27186115	27186315	+	870.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	42222.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	3.30725708920662	3.4545098440967	3.68940389090218	3.51515904762973	3.41131730183717	3.60057437147264	3.41593040957841	3.58933610538269	0.0144473213290083	0.977048142168063	0.991832478270637
Merged-chr18-80713011-4	chr18	80712939	80713139	+	983.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164109)	promoter-TSS (NM_001164109)	32.0	NM_001164109	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	4.46663786261156	4.07660524542594	4.69119086483296	4.35762547729303	4.49303671898015	4.67820479380254	4.36320382873061	4.1420049152188	0.0558127410797571	0.89076334833535	0.959135381153648
Merged-chr17-65749986-2	chr17	65749877	65750077	+	828.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	22775.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	3.38741081990349	3.21720368535929	3.45555142177774	3.19893234499316	4.33603193928638	3.9296469753433	4.17738097313361	4.07750067960332	2.5623010816553	7.78381439250029e-08	3.40300466764441e-06
Merged-chr2-91412510-4	chr2	91412389	91412589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 2 of 8)	intron (NM_175123, intron 2 of 8)	32225.0	NM_001311144	228356.0	Mm.386861	NM_175123	ENSMUSG00000040591	1110051M20Rik	AI586322	RIKEN cDNA 1110051M20 gene	protein-coding	7.75395307860932	7.96656592330558	7.64864075129722	7.84305787546849	7.80104897613046	7.528603113896	7.65321636498789	7.66040643956305	-0.186392088886717	0.284079434798574	0.596035490823689
Merged-chr3-28039975-2	chr3	28039875	28040075	+	644.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 7 of 25)	intron (NM_008875, intron 7 of 25)	55804.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	3.02607274507988	2.98786299439235	2.96019021583716	2.98739945290132	3.15369613586653	3.4297227834413	3.19458037451648	3.26048642801861	1.05352528744092	0.056337077536277	0.248550883468905
Merged-chr7-127478434-3	chr7	127478323	127478523	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6798.0	NM_010183	14123.0	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	6.88505846766971	7.35598562970345	6.25186990414412	6.59988553454269	6.95107018200017	7.32883372171659	6.96667210484198	7.00941929386486	0.323417994891929	0.231813621839973	0.541364932870089
Merged-chr9-119246695-2	chr9	119246601	119246801	+	688.25	f0_balb.idr|f0_c57.idr	intron (NM_001359582, intron 14 of 18)	intron (NM_001359582, intron 14 of 18)	-15009.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	3.53319674341844	3.71572424327551	3.71106454739241	3.64166749877234	4.27487531017827	3.77334599492582	3.89854207940157	4.00426628822142	1.02576895060868	0.0247401598304788	0.147454531819937
Merged-chr10-34234206-3	chr10	34234089	34234289	+	875.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-26638.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	3.29193667840647	3.12656791051523	3.16985973227617	3.31181090266069	3.37456480156466	3.72072142601856	3.22102348393364	3.29063750449648	0.639748991033364	0.23870091891619	0.549054538941201
Merged-chr13-75820130-4	chr13	75820030	75820230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19755.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	6.0751224324146	6.12075661279288	6.17785755689919	6.28628457350987	6.11545504909656	6.16475154980727	6.04525908575652	6.15377330370302	-0.0896254333920275	0.694027058363802	0.875718423486147
Merged-chr15-89089570-2	chr15	89089470	89089670	+	952.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_027905, exon 1 of 9)	exon (NM_027905, exon 1 of 9)	532.0	NM_027905	223776.0	Mm.44763	NM_027905	ENSMUSG00000035757	Selenoo	1300018J18Rik|Selo	selenoprotein O	protein-coding	3.22499293873924	3.20305946518058	3.11009618477085	3.17634613031986	3.07732383619837	3.09111586145577	3.09922485591668	3.22367597532081	-0.225017713201971	0.681833231090914	0.869647747559641
Merged-chr17-74489497-4	chr17	74489414	74489614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026417)	promoter-TSS (NM_026417)	21.0	NM_026417	67864.0	Mm.41891	NM_026417	ENSMUSG00000024072	Yipf4	2310034L04Rik	Yip1 domain family, member 4	protein-coding	7.51164667388612	7.56440550269236	7.58467393493006	7.46079794616992	7.54901737527652	7.63343421032018	7.60680137972538	7.4511706571347	0.044860377877891	0.789697555335565	0.918573649782491
Merged-chr1-80615621-4	chr1	80615518	80615718	+	873.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 3 of 55)	intron (NM_175291, intron 3 of 55)	49734.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	3.84979768676585	3.71011817768548	3.95626239434555	3.99688790971195	4.33330444602208	4.39795162623748	4.12657189138556	3.84819950236253	0.802133550500504	0.0691271077246459	0.281093575100557
Merged-chr5-38598832-3	chr5	38598719	38598919	+	840.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	-37224.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	2.9902167382148	2.90047122852447	2.99054379880415	2.33581982970151	3.99728089544134	4.62737922010157	4.5495435971761	3.99723555285502	8.18751309515653	5.3837375817024e-17	1.19379768638005e-14
Merged-chr3-54248552-5	chr3	54248388	54248588	+	900.742859	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253682, intron 3 of 11)	intron (NM_001253682, intron 3 of 11)	92431.0	NM_001253682	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	3.9850584699387	3.93892332199407	4.23271501035179	3.84080155064727	3.66756640818809	3.67560268221572	3.8745828115356	3.61761806577632	-0.838561636241758	0.0713726826062141	0.286743589503173
Merged-chr10-127512054-4	chr10	127511913	127512113	+	775.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2926.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	3.30266270516456	3.58098272150516	3.24267552466885	2.93683879457661	3.38541932596264	3.58633985821529	3.23099992430794	3.35900573324123	0.407777173295664	0.474161848329184	0.751607118426792
Merged-chr4-87893156-4	chr4	87893054	87893254	+	590.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027326, intron 2 of 10)	intron (NM_027326, intron 2 of 10)	-86831.0	NM_029931	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	3.58771764896992	3.30470455631015	3.47679911466266	3.46153527940431	3.57243312518199	3.80975408585352	3.57371495735787	3.73682086259864	0.683574283696179	0.157896274934485	0.444708083164274
Merged-chr13-21721428-3	chr13	21721310	21721510	+	667.399963	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178200)	promoter-TSS (NM_178200)	-634.0	NM_178200	319186.0	Mm.277425	NM_178200	ENSMUSG00000114279	Hist1h2bm	H2b-291b	histone cluster 1, H2bm	protein-coding	3.44686354962346	3.36570178032532	3.44734248052321	3.28549654469546	3.29615820117003	3.26155540008576	3.38010536210929	3.49707701159642	-0.0725939806932845	0.887905677816987	0.957956744192186
Merged-chr17-32193186-4	chr17	32193088	32193288	+	925.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-3718.0	NM_001347341	71932.0	Mm.176240	NM_001033163	ENSMUSG00000037577	Ephx3	2310063B19Rik|Abhd9|EH3	epoxide hydrolase 3	protein-coding	3.87415461025322	4.21701261068332	4.09409324052493	4.21454737525075	4.30023344953902	4.05689905015104	4.6345551170468	4.55338806951671	0.698196905193958	0.0963277933923306	0.340062751530504
Merged-chr7-44825053-4	chr7	44824962	44825162	+	892.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171024, intron 1 of 8)	intron (NM_001171024, intron 1 of 8)	-8404.0	NR_033136	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	4.29853361771775	4.34487537890946	4.1580271541868	4.16857101654117	4.56493831889232	4.38037836538173	4.48402783818424	4.34047434559773	0.50756445666325	0.176093060442915	0.471068221483845
Merged-chr2-84623982-4	chr2	84623880	84624080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355067, intron 1 of 15)	intron (NM_001355067, intron 1 of 15)	25500.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	6.96610483882945	7.48542773419722	7.52921606768469	7.34109115072144	6.72586269445946	6.90025120317501	7.02043889199995	6.8810675905687	-0.64400886242855	0.00211939170879368	0.0244578765305165
Merged-chr10-80261072-4	chr10	80260958	80261158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347119)	promoter-TSS (NM_001347119)	-46.0	NM_010255	14431.0	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	7.83395222634395	7.7223275988101	7.72542191430728	7.83801962973552	7.97752596096224	7.96659921847606	7.89118091154242	7.76838271209557	0.158359266638667	0.329236147119334	0.640484837404877
Merged-chr16-5473682-3	chr16	5473565	5473765	+	966.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-217709.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	4.30232574879465	4.30653327755888	4.64576541485994	4.41263827175941	4.13314700639392	3.95801218630813	3.88097216345258	4.57422541058276	-0.623347481741291	0.151706984763667	0.435412422442889
Merged-chr14-61971284-4	chr14	61971170	61971370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-288897.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	6.74514400292836	6.37577406998516	6.41372981638041	6.35886059861444	6.42404098647456	6.21105763586739	6.19553707174919	6.40914306415505	-0.228431758375669	0.318988607618628	0.630835151818189
Merged-chr11-58917098-3	chr11	58916998	58917198	+	833.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138678)	promoter-TSS (NM_138678)	-959.0	NM_138678	192194.0	Mm.22540	NM_138678	ENSMUSG00000020490	Btnl10	BUTR-1|Butr1	butyrophilin-like 10	protein-coding	3.6942968699605	3.82539479078314	3.80200832905126	3.33282818779535	4.01486114362195	4.07128321645878	3.88390501975194	3.74736482304578	0.798562516462648	0.0950146318328879	0.337258588701597
Merged-chr12-54696519-4	chr12	54696449	54696649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331162)	promoter-TSS (NM_001331162)	-655.0	NM_025456	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	5.10565960436061	5.55177262497191	5.21382016041019	5.20691756990964	5.77795876701949	5.60939402656587	5.59361848872421	5.75937981131206	0.711754999292463	0.0109255960833982	0.0840727571481299
Merged-chr5-99203637-4	chr5	99203523	99203723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49304.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.33508250842843	5.92073115816066	5.81783166134671	6.20344388835762	5.97185534583077	6.06549519757484	5.48556606377396	5.76342332774644	-0.392377505954595	0.154276310418906	0.439456383272923
Merged-chr7-74645776-4	chr7	74645661	74645861	+	974.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90981.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	4.51303226345884	4.83888751194079	4.78147691055845	4.78753795616411	5.50825878664025	5.07280562904738	5.27788605066038	5.00028802431026	0.966060366205773	0.0035363071970719	0.036347696954849
Merged-chr5-137628914-4	chr5	137628821	137629021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168652)	promoter-TSS (NM_001168652)	-202.0	NM_001168652	231798.0	Mm.200763	NM_146164	ENSMUSG00000093445	Lrch4	2810008P14Rik|2900069C24Rik|AI558103|LRN|LRRN4|SAP25|mFLJ00248	leucine-rich repeats and calponin homology (CH) domain containing 4	protein-coding	8.92870496478372	9.02663365188286	8.94134367433106	8.69107983873857	9.27528074471936	9.32266743933816	9.18693966443154	9.14823390037138	0.417993903993241	0.00537039966589241	0.0500888483079391
Merged-chr17-5802259-4	chr17	5802161	5802361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045079, intron 2 of 2)	intron (NR_045079, intron 2 of 2)	2771.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	5.97306812089845	5.73222318326091	6.10011463015539	6.62036688356682	5.87032047531463	5.88290047262505	5.72879337022634	5.99172861367883	-0.470869633409323	0.107969690737885	0.362559597364667
Merged-chr11-17183407-3	chr11	17183300	17183500	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 2 of 5)	ORR1C1|LTR|ERVL-MaLR	24102.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	3.2758247888679	3.40550711218209	3.1642327099642	3.27623267965926	2.9654856474279	3.33413723973183	2.89832687291687	2.83256992741337	-1.07070931537831	0.0789969069650066	0.304143905332072
Merged-chr11-120643801-4	chr11	120643713	120643913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348222)	promoter-TSS (NM_001348222)	-44.0	NM_001348222	209027.0	Mm.127731	NM_144795	ENSMUSG00000025140	Pycr1	P5CR 1|P5CR1	pyrroline-5-carboxylate reductase 1	protein-coding	6.68318308034575	6.48214192630885	5.82029684065425	6.17946266836898	6.64238311448516	6.3342378787272	6.50362931643399	6.29212566950965	0.192938303585845	0.46667158867136	0.746440951133739
Merged-chr10-44271873-4	chr10	44271772	44271972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358596, intron 1 of 6)	L2|LINE|L2	3533.0	NM_001358596	11793.0	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	6.86895870235625	7.14905398616541	6.98586181483168	6.72929379114169	7.17297516398618	6.65695283930877	6.7231262949812	6.62903916372641	-0.150201923448199	0.515718707506443	0.77771910766104
Merged-chr5-76929344-4	chr5	76929248	76929448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172146, intron 1 of 10)	intron (NM_172146, intron 1 of 10)	-21954.0	NM_001356974	67054.0	Mm.182931	NM_025939	ENSMUSG00000029247	Paics	2610511I09Rik|ADE2H1|AIRC|PAIS	phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	protein-coding	5.52114070323084	5.75627865488239	5.52209269668155	5.79727070720983	6.18921415344185	5.94865272047452	6.33190682824503	6.07923798594878	0.757549358635385	0.00300183668900089	0.032005352559376
Merged-chr2-60089340-4	chr2	60089238	60089438	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	36402.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	5.67985202294926	5.85796998899034	5.40419333194756	5.47687481192878	5.81003549664489	5.72536925892167	5.81386161789704	5.12677755137116	0.0680807423744109	0.822336901961914	0.932143478460956
Merged-chr10-11492153-3	chr10	11492051	11492251	+	694.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-117073.0	NM_013898	30058.0	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	4.81221285163054	4.49475243636301	4.32497748016593	5.12432127642311	4.69690838636625	4.83224300430656	5.02370969770085	5.1899175423965	0.400395031324108	0.312926932500094	0.624844338329291
Merged-chr13-34793266-4	chr13	34793152	34793352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53610.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	6.07112724687197	6.2254008306592	6.28893858476454	6.37348186633028	6.08283716179972	6.04028217189433	6.20158901890789	6.22899661405143	-0.177961144925627	0.438767464129376	0.726732530107543
Merged-chr12-79191893-4	chr12	79191791	79191991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362269)	promoter-TSS (NM_001362269)	-36.0	NM_021557	17252.0	Mm.291799	NM_021557	ENSMUSG00000066441	Rdh11	2610319N22Rik|AI428145|AU045252|Arsdr1|C85936|CGI-82|HCBP12|M42C60|Mdt1|Psdr1|SCALD|UBE-1c1|Ube-1c|ralR1	retinol dehydrogenase 11	protein-coding	5.7655758692206	5.49506832490139	5.44200545464384	5.5080523626883	5.97918663935175	5.73595989889333	6.03149962030809	5.63726127185614	0.51288407035262	0.0539274141214907	0.242435871676533
Merged-chr2-118554543-4	chr2	118554378	118554578	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4792.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	4.16845313532668	4.37130581092298	4.11589074851797	4.87733195021113	4.3457472284632	4.3479872916071	4.75702125660796	4.6045016876188	0.177902374956945	0.68534654629258	0.871330007833379
Merged-chr14-101662097-4	chr14	101661999	101662199	+	868.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016723, intron 2 of 8)	CT-rich|Low_complexity|Low_complexity	8132.0	NM_016723	50933.0	Mm.275970	NM_016723	ENSMUSG00000022111	Uchl3	-	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	protein-coding	4.47814237589552	4.21128215912257	4.70917913515997	4.73754195912703	4.1445172143469	4.73189227161792	4.41602913471992	4.55738414318889	-0.198092558663141	0.623716739001682	0.839108068902005
Merged-chr4-119331524-4	chr4	119331387	119331587	+	750.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001270435, exon 12 of 15)	exon (NM_001270435, exon 12 of 15)	-10964.0	NM_001110130	66101.0	Mm.304080	NM_028677	ENSMUSG00000060288	Ppih	1100001J08Rik|2010111B15Rik|4833408F11Rik|AI464484|CYP-20|CYPH|D4Wsu43e	peptidyl prolyl isomerase H	protein-coding	2.99061584473478	3.50746135084856	3.3935194976974	3.62095690890505	3.37905002511404	3.62045423996905	3.63888783886077	3.44837872515116	0.382017567044276	0.502538141529867	0.769773167614025
Merged-chr19-10803937-4	chr19	10803837	10804037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009852, intron 1 of 12)	intron (NM_009852, intron 1 of 12)	26121.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	5.17176105381583	5.27888679907401	5.07128710899576	5.32759086977934	5.20221707863455	5.06079744464365	5.38247131499726	5.45806528391455	0.10377910341118	0.72822379960293	0.891833275957691
Merged-chr4-55386952-4	chr4	55386843	55387043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009011, intron 9 of 9)	RMER10B|LTR|ERVL	31899.0	NR_040674	100415914.0	Mm.261765	NR_040674	ENSMUSG00000087070	Gm12505	-	predicted gene 12505	ncRNA	6.2816184275838	6.1544430756259	6.78353241663273	6.98199402579658	6.18071769177229	6.13557170813561	6.34268206568107	6.19892973907024	-0.584023774717973	0.0309607046384487	0.170905828694243
Merged-chr7-46987470-2	chr7	46987370	46987570	+	716.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033461, intron 4 of 4)	intron (NR_033461, intron 4 of 4)	10838.0	NR_033461	629141.0	Mm.229259	NR_033461	ENSMUSG00000056509	Gm9999	-	predicted gene 9999	ncRNA	3.32728808301649	3.10615244651567	3.38489816321266	3.59181930547101	3.07690382736693	3.55531290050247	3.25628765768204	3.58884359128445	0.0338130130846887	0.953050128367458	0.983308033287352
Merged-chr16-3723184-2	chr16	3723084	3723284	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5060.0	NM_001161791	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	5.31406988731938	5.88036755407809	5.66247780631835	5.26247597782431	5.8565236225983	5.70475418808968	5.70710123622185	5.63288886640767	0.316423430821341	0.276519055508884	0.588504895079849
Merged-chr4-59036836-7	chr4	59036757	59036957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025277, intron 1 of 2)	intron (NM_025277, intron 1 of 2)	1701.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	4.91088608855941	4.78896194825306	5.01440484167584	4.87167897426135	4.86543965149329	5.11932141721967	4.88819475001977	4.97771219763567	0.130992518860191	0.679539174461571	0.868507485796886
Merged-chr6-67037450-4	chr6	67037352	67037552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007836)	promoter-TSS (NM_007836)	-45.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	8.51629830693228	8.53718406009102	8.6208781623175	8.84446688669684	8.49431053322439	8.47661055871919	8.81759334383731	8.3063940442427	-0.1314874939032	0.458003256078901	0.740981311129196
Merged-chr2-159646806-4	chr2	159646701	159646901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-300540.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	6.05690098149261	5.92455984795784	5.89693353794782	6.69251171455491	6.20889386886598	5.9999165646364	6.38036068825628	6.05364260397935	-0.0613486495340708	0.833048470358818	0.936221000578989
Merged-chr1-56902952-3	chr1	56902834	56903034	+	693.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358580, intron 4 of 11)	intron (NM_001358580, intron 4 of 11)	68400.0	NM_139146	212712.0	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	3.28479968684863	3.00729753100801	3.52344999498662	3.50654021234688	2.61282325880776	2.88916660205778	2.98205811707184	2.85310490762826	-2.35468574810595	0.000776666645798347	0.0109796137400756
Merged-chr12-84004032-4	chr12	84003930	84004130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-5472.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	7.14235887469418	6.97862625978432	6.99217761298594	6.85649629113281	7.14224094213798	6.95362769603134	6.552842032464	6.80074561020318	-0.139041184606901	0.521588637263493	0.781471701856069
Merged-chr15-7217220-4	chr15	7217109	7217309	+	983.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289496, intron 20 of 22)	intron (NM_001289496, intron 20 of 22)	76667.0	NM_013584	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	4.88967447076048	4.80756463882871	4.99882209984194	5.16115728047888	5.04626407898529	5.33220376897107	5.00857543188392	4.99545182506971	0.216422706805357	0.500961324541575	0.769041902372859
Merged-chr2-3664307-4	chr2	3664190	3664390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49168.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	7.52444179508936	7.43453398474558	7.11508981190306	7.39403577715723	7.08127359625907	7.04488715521536	7.03114353332161	6.87632347033483	-0.496217013986528	0.00974037785091398	0.0774735003967154
Merged-chr7-44887134-4	chr7	44887039	44887239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331206, intron 3 of 16)	intron (NM_001331206, intron 3 of 16)	5285.0	NM_001331208	75613.0	Mm.157778	NM_029365	ENSMUSG00000002968	Med25	2610034E13Rik|2610529E18Rik|ESTM2	mediator complex subunit 25	protein-coding	6.32901884394349	6.28928429157399	6.48130984385013	6.23042712772392	6.16960224796986	6.01298412882391	6.27985338963931	6.23308818341391	-0.224057276218141	0.322127139515771	0.633599194859983
Merged-chr13-54611125-7	chr13	54611065	54611265	+	994.5238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347512, exon 1 of 6)	exon (NM_001347512, exon 1 of 6)	208.0	NM_028870	74325.0	Mm.290026	NM_028870	ENSMUSG00000047547	Cltb	2310046E19Rik|lcb	clathrin, light polypeptide (Lcb)	protein-coding	5.26830551932239	4.97186861294097	5.3758426451093	4.80064658907829	5.08528365170102	4.89897485958677	4.85773082495509	4.83929398984949	-0.342191769983455	0.31701893107461	0.628905690750891
Merged-chr10-127667793-4	chr10	127667706	127667906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045171, intron 1 of 1)	intron (NR_045171, intron 1 of 1)	683.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	7.50684200785046	7.40780050042882	7.76649523501733	7.28631674326906	7.94395248305935	8.1111117102486	7.9807344835721	7.70554503989336	0.588106810548004	0.00203814962709796	0.0237241949807369
Merged-chr11-94322037-4	chr11	94321947	94322147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155068)	promoter-TSS (NR_155068)	-84.0	NM_001361573	67684.0	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	6.12322723483645	6.31037062326532	5.99052903359386	6.05313573369312	6.61946885429524	6.36252004779515	6.40783506020474	6.33344380782663	0.48425647079643	0.0338218332221542	0.181379119686563
Merged-chr2-79349275-3	chr2	79349193	79349393	+	943.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048176, intron 5 of 12)	L1_Mur3|LINE|L1	79695.0	NM_001048176	228094.0	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	3.60346987328056	3.78299068080225	3.83582675040424	4.13888870282501	3.73887615534544	3.72315272794477	4.18373651763336	4.38552200678087	0.458016755052053	0.362330790629852	0.667521051512637
Merged-chr1-46066867-4	chr1	46066719	46066919	+	697.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160386)	promoter-TSS (NM_001160386)	81.0	NM_001160386	227058.0	Mm.296880	NM_001160386	ENSMUSG00000041144	Dnah7b	Dnahc7b|Gm107	dynein, axonemal, heavy chain 7B	protein-coding	3.72681910691092	3.85516578422875	3.5505314794935	3.7384326132096	4.10330142467833	3.66790847265162	3.91410928029638	4.18334458133625	0.739478930573481	0.108434196822267	0.363467751147263
Merged-chr14-47294491-3	chr14	47294375	47294575	+	914.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3799.0	NM_178684	218975.0	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	4.00133807649006	4.26415663428294	3.89641832849541	3.83442848521718	4.27852006928971	3.90317637060268	4.37103175139926	4.23059963661787	0.53759315906064	0.211016023474273	0.515716175112166
Merged-chr9-63500158-3	chr9	63500040	63500240	+	860.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030068, intron 14 of 21)	intron (NM_030068, intron 14 of 21)	-100896.0	NM_027090	69478.0	Mm.113942	NM_027090	ENSMUSG00000032403	2300009A05Rik	-	RIKEN cDNA 2300009A05 gene	protein-coding	3.65944182423897	4.06066063299792	3.82292849367167	3.52153699407906	4.15391141186533	3.94400600597907	3.85650167384394	3.59897888512706	0.385525829240281	0.429504976850267	0.720394119122296
Merged-chr12-111758860-4	chr12	111758747	111758947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025358)	promoter-TSS (NM_001025358)	-2.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	5.4257254263263	5.20165800711791	5.21162773199097	5.21169788980799	5.65025298724449	5.6002402298987	5.39950935686336	5.47810289129026	0.496438880591399	0.0734706164102865	0.29196264737426
Merged-chr19-10845640-4	chr19	10845543	10845743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023044, intron 1 of 7)	intron (NM_023044, intron 1 of 7)	3099.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	6.21966762501128	6.81204669481895	6.54404381820952	6.281885685226	7.03129221881346	6.72132017236007	6.90820531805775	6.95065729419579	0.616508267963997	0.00725234593592411	0.0624927614975717
Merged-chr9-74935472-4	chr9	74935334	74935534	+	963.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17446.0	NM_001359816	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	4.03455858762998	4.14779148780309	3.97949871969125	4.71095673342103	4.53583069539011	3.98434391560826	4.61268780625724	4.52548334229235	0.383291416932881	0.415224739446315	0.709525428617195
Merged-chr2-93642814-4	chr2	93642740	93642940	+	718.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007442, exon 1 of 4)	exon (NM_007442, exon 1 of 4)	406.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	2.75397985246912	3.14970832932695	3.1011549898348	3.43747788092556	2.92538255509724	3.38598680854034	3.20541818340164	3.15927962962003	0.137922523511993	0.832264785228451	0.935753947395642
Merged-chr14-32084954-4	chr14	32084853	32085053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145460)	promoter-TSS (NM_145460)	333.0	NR_104305	105638.0	Mm.2519	NM_172254	ENSMUSG00000021905	Dph3	DELGIP1|DelgipP1|Desr1|KTI11|Zcsl2	diphthamine biosynthesis 3	protein-coding	6.50457005325038	6.68176296844245	6.5711628148327	6.83067744786433	6.43586778312979	6.54082038726486	6.68698323228283	6.26153918782383	-0.257536963154081	0.245816892526605	0.556980982783193
Merged-chr4-145194201-4	chr4	145194116	145194316	+	850.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 1 of 69)	intron (NM_001276465, intron 1 of 69)	789.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	4.17068253805609	3.83074102213903	4.17133085358407	4.24002973949822	3.93820962192311	3.82244526659116	3.96670663776483	4.40647583114856	-0.169789864995167	0.705168474224357	0.881587544161158
Merged-chr1-130428866-4	chr1	130428744	130428944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151525, intron 2 of 3)	intron (NR_151525, intron 2 of 3)	-5801.0	NM_001317361	13137.0	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding	6.84318183467618	6.7484184337444	6.33761674681116	5.59407148049595	7.01054112995453	6.93992066185979	6.67238023757375	6.7019525914845	0.548183150155437	0.0724656818533041	0.289354581433655
Merged-chr5-101239539-4	chr5	101239452	101239652	+	886.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	393323.0	NM_172715	231510.0	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	3.68227988162444	3.72032096779753	3.57282008641093	3.64167077355378	3.98925317180396	3.80055360982903	3.55955821037695	3.62700874218838	0.330115315620421	0.485068710735178	0.759068522102864
Merged-chr8-109737735-4	chr8	109737590	109737790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080930)	promoter-TSS (NM_001080930)	49.0	NM_001080930	52335.0	Mm.276770	NM_001080930	ENSMUSG00000069895	Atxn1l	AW558552|Boat|C330011L24Rik|D6Mgi37|D8Ertd587e	ataxin 1-like	protein-coding	6.28908321952687	6.23748519102496	6.0331052262222	6.00528891944603	6.16155440773427	6.14220025315746	6.02397226284448	6.24943518758528	0.0149320360642472	0.949063168255369	0.981680577400659
Merged-chr18-23845309-2	chr18	23845209	23845409	+	658.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 3 of 7)	intron (NM_001162941, intron 3 of 7)	41339.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	3.10084772850207	2.94757936084372	2.90584943332234	3.27583024876939	3.25009324428288	3.27083705957811	3.14863822705769	3.21515808716751	0.54605900325669	0.347340952621687	0.655453637603211
Merged-chr7-132811103-4	chr7	132810995	132811195	+	982.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	2101.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	5.87852394316693	5.12378071758906	4.79512204117449	5.5379141405079	5.53094809359862	5.72235170672597	5.86979136668886	5.87532979091231	0.59415003374158	0.0832977655859008	0.313673243923332
Merged-chr13-75992876-3	chr13	75992776	75992976	+	999.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029343, intron 3 of 4)	intron (NM_029343, intron 3 of 4)	25137.0	NM_029343	75571.0	Mm.443291	NM_029343	ENSMUSG00000021590	Spata9	1700030K01Rik|4930599C08Rik|A930023H06Rik	spermatogenesis associated 9	protein-coding	3.55874837864336	3.5049859719397	3.48463490315989	3.61082022791521	4.78439770708568	4.32931138645147	4.56902721950761	4.94294491878635	2.90864269180982	3.06650009886749e-09	1.80239810517993e-07
Merged-chr7-120981641-4	chr7	120981534	120981734	+	785.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028955)	promoter-TSS (NM_028955)	678.0	NM_007672	12585.0	Mm.1640	NM_007672	ENSMUSG00000030878	Cdr2	AA617262	cerebellar degeneration-related 2	protein-coding	3.21594187135782	3.26147977280214	3.01792139239701	3.08621259039706	3.30166204232596	3.39032026293164	3.52520329347697	3.53883813074886	1.06559905074255	0.0442014412294382	0.21446587493321
Merged-chr10-127537098-2	chr10	127536998	127537198	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2539.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	3.06611547040254	3.37096582765739	3.29267716810878	2.8940275804565	2.92926981344942	3.0464511561265	3.22634261618254	2.93554413917682	-0.507038597157631	0.403664079137634	0.700922982752502
Merged-chr5-105005241-4	chr5	105005133	105005333	+	861.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22516.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	4.01909116609455	3.85331334959035	3.72576183745768	3.72131565732401	4.03868721875191	3.89942884582103	3.91202809004947	3.5477768728102	0.113700884186329	0.806520321370983	0.925439675100154
Merged-chr18-38372171-4	chr18	38372073	38372273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-33180.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	7.07743692600034	7.6677049741038	7.17356335016887	6.97422989210337	7.04220035731445	7.64408246750031	7.2464869461733	7.02343513171718	0.0129428016846852	0.957602383806271	0.984867785534328
Merged-chr3-28171458-4	chr3	28171356	28171556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-91758.0	NM_001163007	665113.0	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	6.38135290304605	6.18472826554986	6.08622366986197	6.21716195169947	6.16979178329228	6.2195712084049	5.92393560853891	5.72246434111371	-0.296255408716957	0.231001229899281	0.5404962540022
Merged-chr5-64161037-4	chr5	64160997	64161197	+	917.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 1 of 19)	intron (NM_019636, intron 1 of 19)	837.0	NM_001310611	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	3.71089809884876	3.16225389596224	3.66276559298541	3.26078582145616	3.67769673637889	3.67734680342443	3.54491295590909	3.50253255483336	0.470258872785169	0.373032181951455	0.67671796075698
Merged-chr7-145188020-3	chr7	145187919	145188119	+	735.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132643, intron 20 of 22)	intron (NR_132643, intron 20 of 22)	20100.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	3.58658640455082	3.69485643260407	3.73342914052363	3.98972429903768	2.99050595422957	3.27722757554353	3.28783525825898	3.36021647853022	-1.97614267004838	0.00053302670003311	0.00812774367644745
Merged-chr14-16250817-4	chr14	16250739	16250939	+	881.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362432, intron 1 of 11)	intron (NM_001362432, intron 1 of 11)	-1031.0	NM_027695	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	4.31727504651929	4.24594304752852	3.87117962052988	4.27782229513263	4.48679466568123	4.31108108999056	4.16730147100865	4.18286352225759	0.255328438068909	0.534232034514041	0.789066961676578
Merged-chr14-45599846-3	chr14	45599771	45599971	+	922.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176845, intron 11 of 12)	intron (NM_176845, intron 11 of 12)	56161.0	NR_045809	67651.0	Mm.55930	NR_045809	ENSMUSG00000115324	4930527F14Rik	-	RIKEN cDNA 4930527F14 gene	ncRNA	3.42314004094395	3.67197678850193	3.69787166527408	3.63795368314437	4.09055707996882	4.29846448719714	4.78376416969336	4.29119897626968	2.04661488438642	1.47584635004783e-05	0.000390372602564306
Merged-chr14-47568478-4	chr14	47568362	47568562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172599)	promoter-TSS (NM_172599)	-28.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	6.94796907371287	7.08099091678919	6.69802974833771	6.97819409851649	7.40992227661669	7.54335311641129	7.33025611619175	7.09549133672612	0.567188914598593	0.0047058137585227	0.0454361255450199
Merged-chr18-80984232-3	chr18	80984132	80984332	+	721.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178280, intron 1 of 3)	intron (NM_178280, intron 1 of 3)	2346.0	NM_178280	20689.0	Mm.215917	NM_178280	ENSMUSG00000024565	Sall3	B130022O04Rik|Msal|Msal-1|Sal|Salt|Spalt	spalt like transcription factor 3	protein-coding	3.520032477123	3.7498728952783	3.87335757882148	4.01886115342652	3.32704904879107	3.63703989121057	3.25632083997932	3.629551512377	-1.10822218308521	0.0352301945779734	0.186096476427871
Merged-chr17-33562485-4	chr17	33562393	33562593	+	956.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053214, intron 1 of 27)	intron (NM_053214, intron 1 of 27)	6786.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	5.21713564906142	4.52409696750768	4.92337771562059	5.16161227213788	4.96008936195916	4.77220342681063	5.22055140303617	5.40345613666701	0.229626938289949	0.5267365115211	0.783930077136318
Merged-chr2-49313283-4	chr2	49313175	49313375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290656, intron 8 of 9)	intron (NM_001290656, intron 8 of 9)	67375.0	NM_001290656	109241.0	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630	methyl-CpG binding domain protein 5	protein-coding	6.11646638670028	6.1287800685156	6.00710363160814	6.47896604686367	6.54082860401897	6.27288771143646	6.36779879887162	6.13414389150148	0.195207068288603	0.43235695465147	0.722408561383088
Merged-chr1-157446541-4	chr1	157446436	157446636	+	883.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12032.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	4.35219868897858	4.25697363954242	4.30514122279748	4.70984304506037	4.25611341908201	4.333297227669	5.02966310669725	4.8482254643367	0.490157769254291	0.252445534244739	0.563698274735734
Merged-chr2-143035553-3	chr2	143035464	143035664	+	991.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27505.0	NM_021335	20639.0	Mm.1323	NM_021335	ENSMUSG00000008333	Snrpb2	2810052G09Rik	U2 small nuclear ribonucleoprotein B	protein-coding	4.02154733288407	4.55196111620928	4.69914451680681	4.6693476837581	4.19048291600572	4.64173105925461	4.48942695944496	4.586221474877	-0.0884372980496846	0.829462021611539	0.934551281935698
Merged-chr5-135615481-4	chr5	135615371	135615571	+	900.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-17183.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	4.12457723536369	3.83225119405599	4.0349863825203	4.40243861955639	3.99933760040625	3.64455871552676	3.87082574927087	4.07839363369542	-0.580490115749243	0.212790578703197	0.517748704502455
Merged-chr4-127243724-4	chr4	127243636	127243836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030252)	promoter-TSS (NM_030252)	-48.0	NM_030252	80284.0	Mm.139607	NM_030252	ENSMUSG00000042380	Smim12	BC003266	small integral membrane protein 12	protein-coding	7.1210259198919	7.29446373814872	6.82733607654372	7.11092895163821	7.49582617780534	7.2385723083976	7.51559320473716	7.45085471421154	0.445618933833192	0.021347710028849	0.133700717302547
Merged-chr1-21078642-4	chr1	21078587	21078787	+	965.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177409, intron 1 of 10)	intron (NM_177409, intron 1 of 10)	538.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	4.70515274016111	5.11488523688586	5.04031306698905	4.45315624550042	4.61549168574262	4.67614898862729	4.3378899354687	4.5399678227602	-0.631370876855928	0.103839799829887	0.354154916726953
Merged-chr10-44434833-4	chr10	44434714	44434914	+	955.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23934.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.49515544283127	4.17850375334948	4.54145554827485	5.03137575759049	5.01315221714034	4.67521599580707	5.05698379046396	5.1079107485676	0.71487566562292	0.0777822256701681	0.301632309505688
Merged-chr7-25719044-4	chr7	25718929	25719129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028771)	promoter-TSS (NM_028771)	24.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	5.68719859288258	5.32922815634614	5.18287396085105	5.31529944449949	5.42690107310347	5.48962006789543	5.01329946924617	5.83608153295321	0.149578315879976	0.641012098300719	0.848560720572429
Merged-chr8-119605208-4	chr8	119605106	119605306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021441)	promoter-TSS (NM_021441)	34.0	NM_021441	21341.0	Mm.41977	NM_021441	ENSMUSG00000031832	Taf1c	Tafi95|mTAFI95	TATA-box binding protein associated factor, RNA polymerase I, C	protein-coding	6.45574254418042	6.60268343717378	6.31439704812113	6.51223033602507	6.57092083742636	6.43324451538444	6.16429423094693	6.29090245478326	-0.144332237281734	0.52272191773908	0.78208877064842
Merged-chr7-127228965-3	chr7	127228825	127229025	+	918.095215	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-4136.0	NM_001360912	233887.0	Mm.258371	NM_146201	ENSMUSG00000045598	Zfp553	2600009K23Rik|AI431057|BC026401|C330013F15Rik|Znf48	zinc finger protein 553	protein-coding	3.39706113111164	3.70924256889664	3.82634605033006	3.56989994992771	3.52361005051826	3.69239945451598	3.44707080179131	3.82395558399284	-0.0174788444898223	0.971882756240798	0.989768551725772
Merged-chr3-22091304-4	chr3	22091204	22091404	+	943.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	14652.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.6845149745022	4.26406443582224	4.26281625982478	4.88730243181752	4.51169400586968	4.62232072601758	4.66285797795256	4.26030638937044	-0.107235658456124	0.792872233762253	0.919779861256289
Merged-chr18-34930990-4	chr18	34930904	34931104	+	914.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144866, intron 2 of 10)	intron (NM_144866, intron 2 of 10)	999.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	4.31029497866091	3.87643824894413	4.43186923453171	4.26014389533089	4.30842544058789	4.04233871643219	3.95887095465089	4.57359006737344	0.0325533933605103	0.940981928352258	0.978676631829834
Merged-chr3-104781717-4	chr3	104781566	104781766	+	814.895813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027982, intron 1 of 9)	CpG	610.0	NM_027982	71887.0	Mm.379204	NM_027982	ENSMUSG00000002228	Ppm1j	2310008J22Rik|PP2Czeta|Ppp2cz	protein phosphatase 1J	protein-coding	4.22107150215189	3.83465741809373	4.13154289334984	4.169460342896	4.28654825474132	4.256497221051	4.01781799217516	4.26181175756162	0.284989588122029	0.489209438769996	0.761620931360531
Merged-chr11-67545345-3	chr11	67545219	67545419	+	918.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	12321.0	NM_008088	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	2.80731227161305	3.18574894148623	2.88293184002044	2.64388614838193	3.54786552972629	3.38135686430138	3.45267726858722	3.08578818169671	1.96313013527564	0.00157126489245378	0.0193932831246693
Merged-chr13-45455786-3	chr13	45455695	45455895	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-51649.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	4.99825981596103	4.85289564372594	5.25795634303062	5.45999336894279	4.1787982636491	4.31428883725501	4.87525822386061	4.23708184291134	-1.56924210957204	0.000101713909192108	0.00205971389541538
Merged-chr11-117326419-4	chr11	117326307	117326507	+	960.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-5308.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	4.91030042354106	5.09423881844359	4.66775580560229	4.55461838812106	5.41222844487377	5.19188529762803	4.77253128373466	5.39326238128199	0.78903800073746	0.0247920553370318	0.147612734481722
Merged-chr2-167760177-4	chr2	167760083	167760283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69006.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	8.33582963545554	8.31651354489222	8.42122906758426	8.72372408995497	8.04516778781056	8.10727897142039	8.48418618034845	8.05962317481852	-0.356860808310569	0.0561199267228608	0.247975850835041
Merged-chr4-125114857-4	chr4	125114745	125114945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13036.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	5.12311283302763	5.19881963398304	5.50773639513581	5.65148072671776	5.53345231727661	5.40969140902495	5.85635647103634	5.84090516411387	0.454607641278217	0.136402568251819	0.41091739052877
Merged-chr8-85298709-4	chr8	85298612	85298812	+	966.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019716)	promoter-TSS (NM_019716)	785.0	NM_022997	65114.0	Mm.296520	NM_022997	ENSMUSG00000031696	Vps35	AI647796|Mem3	VPS35 retromer complex component	protein-coding	5.29180365595673	5.26464933905045	5.07684562062561	5.27001062162489	5.28891092230784	4.99518238297733	5.01843425449337	4.72893679522122	-0.366748783054056	0.252226483402113	0.56356496866418
Merged-chr7-26264052-3	chr7	26263956	26264156	+	690.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2775.0	NM_001167540	100312477.0	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	2.89162525482527	2.73564258848173	3.25289944165098	3.04620824959384	2.45747530214906	2.73563273007794	2.5479280422509	2.6984261571538	-1.99216125550026	0.0064789626563371	0.0574375492484019
Merged-chr1-180943947-2	chr1	180943847	180944047	+	892.4166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 1 of 22)	intron (NM_144794, intron 1 of 22)	1429.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	3.06301747440818	3.11408795832076	3.39241923357909	2.65750857597635	3.16101662342565	3.11102068633748	3.05229681845342	3.18086694806561	0.197407561658232	0.753699512410619	0.902808299713502
Merged-chr7-102153859-3	chr7	102153768	102153968	+	813.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022979, exon 16 of 23)	exon (NM_022979, exon 16 of 23)	-37155.0	NM_001081424	504186.0	Mm.334074	NM_001081424	ENSMUSG00000066279	Chrna10	-	cholinergic receptor, nicotinic, alpha polypeptide 10	protein-coding	4.04709739976942	3.67208691539029	3.71141794688627	3.98205126077564	3.70596573318356	3.77317778344849	3.69702677821074	3.95796614914195	-0.244667890540937	0.59730853996572	0.825256992211092
Merged-chr4-102792794-8	chr4	102792612	102792812	+	935.9739380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144906, intron 1 of 23)	intron (NM_144906, intron 1 of 23)	32577.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	3.70926442120435	3.26350609714097	3.7097952427181	3.83674843423456	3.81475992496407	3.60407115486326	3.47595285335214	3.89603438872095	0.172208622430523	0.740178639025019	0.897731615982446
Merged-chr11-90224307-3	chr11	90224174	90224374	+	952.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-25202.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	3.8034181832632	3.61160509344382	3.80397596263221	4.19524637657686	3.49611477381609	3.52216390546705	3.63428052131058	3.75202114917428	-0.868619940017678	0.082961213977569	0.312910863142771
Merged-chr8-124751810-3	chr8	124751712	124751912	+	879.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081120)	promoter-TSS (NM_001081120)	-3.0	NM_001081120	69627.0	Mm.271600	NM_001081120	ENSMUSG00000043068	Fam89a	2310031A18Rik	family with sequence similarity 89, member A	protein-coding	3.52738319731765	3.90746315224742	3.58192939834052	3.69221623702486	3.35405649199515	3.46421661469943	3.45853948457709	3.46962011104997	-0.847732916052752	0.0917146123106135	0.331075889525163
Merged-chr2-84758925-4	chr2	84758822	84759022	+	772.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16507.0	NM_009776	12258.0	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	3.93199752790771	3.90270463083943	3.98041234590435	3.89919743459208	4.35006842363579	3.65455250913255	4.00872866424541	3.59969527485129	0.077256918013917	0.87409752281678	0.952832392676241
Merged-chr15-85089668-4	chr15	85089587	85089787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_080470, exon 18 of 25)	exon (NM_080470, exon 18 of 25)	42270.0	NM_080470	140557.0	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	6.02627579553012	5.64581975311201	5.50569140638089	5.79070919327642	5.47204544790087	5.73928335777122	5.64198111728021	5.83515881838295	-0.144226888467674	0.59913993562958	0.826204186182419
Merged-chr10-37112894-4	chr10	37112787	37112987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26039.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	5.63035514964092	5.60185408464377	5.68492604146593	5.81910515300045	6.15587426260602	5.9363572126334	5.87135419056328	5.73229500208563	0.397957129050885	0.124710953600617	0.392071138182701
Merged-chr9-44361247-2	chr9	44361100	44361300	+	975.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027889, intron 1 of 15)	intron (NM_027889, intron 1 of 15)	470.0	NM_001357393	71732.0	Mm.295013	NM_027889	ENSMUSG00000032127	Vps11	1200011A11Rik	VPS11, CORVET/HOPS core subunit	protein-coding	3.57611903281168	3.0337344480859	3.47752160062114	3.15917519738028	3.44905305838107	3.36607293729302	3.2410738933908	3.42292103686283	0.188286634104609	0.734546724510075	0.895080097126908
Merged-chr4-135434257-2	chr4	135434157	135434357	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022980)	promoter-TSS (NM_022980)	-452.0	NM_022980	53902.0	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	4.87947375337423	4.66079229419493	4.31667412092394	4.35095438199753	5.17256266998672	4.86766007462318	5.16425138497184	5.01029791566036	1.03645551155027	0.00316656668914808	0.03328800034956
Merged-chr8-120437457-4	chr8	120437353	120437553	+	917.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51413.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	4.46456798874278	5.07993172180393	4.55446665887846	4.62689675978326	4.996704005326	4.54940692491686	4.57586643996784	4.78700771263934	0.0934571194317913	0.804887021144154	0.925078769566449
Merged-chr9-110781546-4	chr9	110781443	110781643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16642.0	NM_153099	235628.0	Mm.292285	NM_153099	ENSMUSG00000044664	Prss42	Tessp2	protease, serine 42	protein-coding	6.47712325449866	6.59123963218034	7.02273874490426	6.7675015364112	6.44068037433962	6.46868164959617	6.46241813562387	6.87411782997712	-0.230322181175563	0.325994809956143	0.63752464702773
Merged-chr2-121452218-4	chr2	121452111	121452311	+	964.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110986, exon 3 of 3)	non-coding (NR_110986, exon 3 of 3)	3013.0	NR_110986	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	5.07571884652445	4.71604720912888	4.89874084770214	4.50077985721845	5.32696258462772	5.4337590257382	5.05153193105178	5.39370080332153	0.995195015265474	0.00253619381925463	0.0280665018440183
Merged-chr12-69502129-4	chr12	69502024	69502224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26574.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	7.3131623943844	7.38233770057983	7.3651577182879	7.63752916236525	7.41983403560252	6.8444478468054	7.35790806651583	7.15531791995481	-0.292556927106741	0.159981344630963	0.447808098214138
Merged-chr2-25983442-4	chr2	25983334	25983534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276361)	promoter-TSS (NM_001276361)	-152.0	NM_001276361	227634.0	Mm.36834	NM_001115076	ENSMUSG00000026933	Camsap1	9530003A05Rik|C77823|PRO2405	calmodulin regulated spectrin-associated protein 1	protein-coding	8.03275923209048	8.12635013959695	7.60174047276891	7.73028168237137	7.89602490996222	8.12377003710483	8.19938778674752	7.82355234335712	0.16745345258861	0.391246548099328	0.691040061984853
Merged-chr3-82029419-3	chr3	82029310	82029510	+	721.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32488.0	NM_021370	58170.0	Mm.88839	NM_021370	ENSMUSG00000028008	Asic5	Accn5|Blinac|Inac	acid-sensing (proton-gated) ion channel family member 5	protein-coding	3.42821421557984	3.53851012459815	4.00715599934839	3.82314452482539	3.94389014451437	3.84267256694655	3.70881413301641	3.77342428730655	0.291651335635431	0.548983704088133	0.797790253922268
Merged-chr6-146724880-4	chr6	146724788	146724988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346666)	promoter-TSS (NM_001346666)	-42.0	NM_001346666	232533.0	Mm.322121	NM_172734	ENSMUSG00000001630	Stk38l	4930473A22Rik|Ndr2|Ndr54	serine/threonine kinase 38 like	protein-coding	8.08744270361545	8.26210781350403	8.16402421905642	7.92891711948876	8.42556374321086	8.12271470466979	8.10084474012815	8.12782783558844	0.123289835113647	0.477258568628191	0.753399593177778
Merged-chr12-75856551-2	chr12	75856451	75856651	+	788.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005510, intron 2 of 115)	intron (NM_001005510, intron 2 of 115)	38233.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	2.71945119794561	2.78094275956124	2.95248309123862	2.28215964163036	2.48227900791394	2.62120851351876	2.57769517895066	2.83970173458087	-0.34165031324857	0.644088439929094	0.850082962136934
Merged-chr4-58911682-4	chr4	58911601	58911801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355697, intron 1 of 49)	CpG	229.0	NM_001355697	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	5.05523583000527	4.89419871689771	5.59746736005582	5.24607764972378	5.15913112663315	5.04504168346546	5.25716043961513	5.47222919169689	0.0344173909258253	0.916201719490531	0.968918528564949
Merged-chr4-135972102-4	chr4	135972000	135972200	+	868.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011942, intron 1 of 9)	intron (NM_011942, intron 1 of 9)	494.0	NM_011942	26394.0	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	4.01768403141077	3.81446970806595	3.69931292891126	4.02935617893589	4.00809731790441	4.36109959958548	3.74383262471999	4.10667308394544	0.440648661134048	0.333708917165198	0.644518017444554
Merged-chr2-102901544-4	chr2	102901468	102901668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177785)	promoter-TSS (NM_001177785)	97.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	7.75750138898075	7.8913758541628	7.63776973921757	7.3398429361455	7.52199696635928	7.66216501523225	7.66616513355924	7.47957186295414	-0.105748793794556	0.587110769588154	0.819073308396926
Merged-chr19-16781037-4	chr19	16780926	16781126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173028)	promoter-TSS (NM_173028)	-93.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	8.38551008725271	8.36739528774984	8.00577363760963	8.22724838928745	8.39647626379299	7.92973295626453	8.37304901826857	7.92140739231307	-0.0942421991105069	0.625605873281821	0.839997329134293
Merged-chr15-31627496-4	chr15	31627415	31627615	+	875.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25399.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	3.60472494011969	3.71271705573591	4.37548371627135	3.61811431008633	3.56982242722809	3.60080708526875	3.80470611934666	3.71551011424203	-0.554224140137513	0.284995463096078	0.596778420443508
Merged-chr18-75367322-4	chr18	75367219	75367419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042660)	promoter-TSS (NM_001042660)	-46.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	7.49227031498917	7.28582220451696	7.22643670422232	7.22972832743867	7.59289324166193	7.70707398765899	7.62051213711271	7.60316814284268	0.429814510472672	0.0134493047745175	0.0973071828161603
Merged-chr5-64205864-4	chr5	64205763	64205963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-24494.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	6.39239338652668	5.87788730756313	6.73290468564462	6.73008990582933	6.03582678607117	6.03074170157784	6.03491159923412	6.03947911067098	-0.681643030396548	0.012534737557962	0.0926201686533976
Merged-chr7-112103140-4	chr7	112103056	112103256	+	820.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133758, intron 22 of 27)	intron (NM_133758, intron 22 of 27)	55540.0	NM_001360260	50781.0	Mm.55143	NM_015814	ENSMUSG00000030772	Dkk3	AW061014|C87148|dkk-3|mDkk-3	dickkopf WNT signaling pathway inhibitor 3	protein-coding	3.50032984331567	3.63908574900817	3.62081244714746	4.01451462488322	3.73036589301829	3.6787393213109	3.99521226111139	3.96818844948924	0.350057344675504	0.481201737551681	0.756470216820335
Merged-chr3-116613961-4	chr3	116613867	116614067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001289571, exon 7 of 16)	exon (NM_001289571, exon 7 of 16)	620.0	NM_030016	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	5.87003393113803	5.71676691416358	6.15738134481858	6.30030336955325	5.3822889112305	5.84959612114694	5.88591804346933	5.55641339672734	-0.596323792906385	0.038514018679774	0.19688231367478
Merged-chr17-5202058-3	chr17	5201957	5202157	+	711.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	206983.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	4.16251406958407	3.86989778936541	3.78453095971893	3.76872928469816	3.95637084038881	4.0621913232554	3.92322712050631	3.88792988936135	0.172733204003106	0.693592942936152	0.875427666186068
Merged-chr19-12005700-4	chr19	12005617	12005817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31023.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	6.04221224311812	6.12962539100952	6.10455236368664	6.2020878507916	6.2254553767693	5.91461498239347	5.56834187927804	5.81030678881574	-0.327939705166882	0.211663882913691	0.516366436642343
Merged-chr2-103971111-3	chr2	103970976	103971176	+	792.0476070000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142336, intron 2 of 3)	intron (NM_001142336, intron 2 of 3)	789.0	NM_001142335	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	2.84227310775414	2.8194655922953	3.03181185578005	2.90769036558922	2.87887630578649	3.14219649591538	3.07691157362133	3.08750488347571	0.603550801303716	0.303026591198682	0.615539788674154
Merged-chr2-122569656-4	chr2	122569590	122569790	+	843.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41587.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	4.00867232348418	4.0881094102361	3.85459715473324	3.89358039658381	4.08978311920109	4.22738659553773	3.99227586801522	4.1004483995261	0.380765672643924	0.357835561947433	0.66387888922109
Merged-chr5-104509638-4	chr5	104509529	104509729	+	742.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166581, intron 1 of 1)	URR1B|DNA|hAT-Charlie	1277.0	NM_001166581	100042165.0	Mm.482189	NM_001166581	ENSMUSG00000079065	BC005561	-	cDNA sequence BC005561	protein-coding	3.96815924949227	4.08554269412848	4.02257567010012	3.91723455148302	4.47844787473795	4.25046932665361	4.55048899590718	4.42467333799287	1.09301522112062	0.00490499920567757	0.046888656790347
Merged-chr12-17455360-3	chr12	17455259	17455459	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-89514.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	4.7671862926664	4.69961131062542	5.2513052684001	4.95655683657755	4.06350784233802	4.39607930274965	4.0270796696862	4.09942904039066	-1.82854751920594	6.21486231483068e-06	0.000180190502935777
Merged-chr11-88070643-3	chr11	88070542	88070742	+	792.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016686, intron 1 of 5)	intron (NM_016686, intron 1 of 5)	2363.0	NM_016686	22344.0	Mm.46628	NM_016686	ENSMUSG00000018377	Vezf1	AI848691|AW046909|db1	vascular endothelial zinc finger 1	protein-coding	3.71728395553648	3.83128324490605	3.55089544917601	3.8304598528761	3.69133946421455	3.66573924841246	3.75374610097932	3.95273032470943	0.0700473667760212	0.880157261439507	0.955098236302142
Merged-chr3-55660466-4	chr3	55660352	55660552	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 49 of 57)	intron (NM_030595, intron 49 of 57)	-122058.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	5.03428725318962	5.02066762058431	5.10446124213852	5.89130070368654	5.10922725390782	5.02340572743	5.20679329402328	4.9956575080196	-0.47894972536945	0.19215443495155	0.491736937402451
Merged-chr5-32136535-4	chr5	32136457	32136657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008037)	promoter-TSS (NM_008037)	85.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	5.87317277692206	6.12628850562349	6.03852021698515	5.67179503739777	6.23719771929743	6.34005685448423	6.46194583252007	6.52085943826677	0.717180488646331	0.00327018929267728	0.0341403349462418
Merged-chr10-60081250-4	chr10	60081173	60081373	+	786.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026937, intron 9 of 10)	intron (NM_026937, intron 9 of 10)	-24984.0	NM_052994	94214.0	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	3.70550730555468	3.74249873699996	3.65254321753498	3.79333583131575	3.73421823012133	3.59219439259184	3.88252009301821	3.75524230803261	0.0471705708999842	0.917896896796331	0.969760089182615
Merged-chr7-138392867-4	chr7	138392750	138392950	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183289, intron 3 of 11)	intron (NM_183289, intron 3 of 11)	4880.0	NM_183289	70571.0	Mm.334297	NM_183289	ENSMUSG00000091002	Tcerg1l	5730476P14Rik	transcription elongation regulator 1-like	protein-coding	5.08340183452464	5.34861582170897	5.72353587447119	5.56326648615661	5.15323536720194	4.99680491729911	5.02466840107598	4.72460331689325	-0.860556411045013	0.00884091940286954	0.0721908686677585
Merged-chr1-43224384-3	chr1	43224278	43224478	+	718.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27617.0	NM_001289533	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	3.53997929025006	3.5151382768668	3.48002888841956	3.17828842241172	4.17951588920521	3.97750155468198	3.74162204976118	3.65158787266462	1.52048925872579	0.00221280876797115	0.025277726736546
Merged-chr6-46142295-1	chr6	46142195	46142395	+	717.0	f0_balb.idr	intron (NM_001004357, intron 8 of 23)	ID_B1|SINE|B4	1082234.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	3.87622002102428	3.72169075409932	3.87680348082503	4.02756949036319	3.3764456172963	3.84606354613515	3.76312783246555	3.61432399760705	-0.707983354392698	0.144519561699834	0.423678002288688
Merged-chr2-103504602-4	chr2	103504494	103504694	+	903.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19441.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	4.5446027142073	4.3147982266667	4.18565929483342	4.75139498860441	4.58387989826033	4.55138887230636	4.31364734798753	4.54238109344847	0.0395867679828302	0.920013957316147	0.970406583631903
Merged-chr11-98587259-4	chr11	98587159	98587359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025661)	promoter-TSS (NM_025661)	-14.0	NM_025661	66612.0	Mm.180546	NM_025661	ENSMUSG00000038150	Ormdl3	2810011N17Rik|AI315223	ORM1-like 3 (S. cerevisiae)	protein-coding	6.86358004222021	6.86663575034289	6.02358635177457	6.71141934612641	7.00214329644608	7.05441387374954	6.90727966602019	6.98679491870944	0.45563712595666	0.0591664298893454	0.256293044857213
Merged-chr2-25500722-4	chr2	25500617	25500817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027062)	promoter-TSS (NM_027062)	-33.0	NM_001356407	30839.0	Mm.29170	NM_013908	ENSMUSG00000015095	Fbxw5	AI159739|Fbw5	F-box and WD-40 domain protein 5	protein-coding	7.44992821991523	7.61363899788721	7.85539584287629	7.24229359005004	7.61105977940098	7.50619379131259	7.42400546278688	7.80708850477741	0.0604251447548486	0.76936184013662	0.909742530773464
Merged-chr13-112928161-2	chr13	112928061	112928261	+	866.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028151)	promoter-TSS (NM_028151)	368.0	NM_172594	218629.0	Mm.35094	NM_172594	ENSMUSG00000042426	Dhx29	3732415M03|AU043276|Ddxx|E130202M19Rik	DEAH (Asp-Glu-Ala-His) box polypeptide 29	protein-coding	3.79396342097607	4.00169376525782	4.51713319871076	3.35488878533172	3.68428501917952	4.13135420507786	3.88688573153502	4.22404730400122	0.0307386494148221	0.954754924865127	0.983838959554429
Merged-chr1-51492055-4	chr1	51492028	51492228	+	919.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13729.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	3.13573177760534	3.24599214236791	3.1361012483535	3.00083762605321	3.12291317499811	3.59686975026862	3.55908548786636	3.37249218600726	1.07463725479578	0.0504700141687895	0.233076308215161
Merged-chr2-138311102-4	chr2	138311006	138311206	+	865.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32613.0	NM_145534	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	4.2012562589282	3.99114827147524	4.45522673959602	4.5243824878249	4.07309399692682	4.06817278417743	4.47151067172647	4.28937254146346	-0.211656857483649	0.618095930501825	0.835863676650469
Merged-chr5-151210558-4	chr5	151210480	151210680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20387.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	5.51624651717323	5.31270757785457	5.23493382426645	5.69703301860353	5.77410455488872	5.60641555086575	5.74198468625914	5.91867388550203	0.49222429373037	0.0813363611745771	0.309417833291006
Merged-chr15-89177783-4	chr15	89177667	89177867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	3021.0	NM_001284506	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	7.6890481518309	7.66770538717005	7.3902477952633	7.58203596310066	7.87306909645044	7.87614828979856	7.88710679594927	8.15239583518036	0.473461792240659	0.00669736673856664	0.0589187822376017
Merged-chr19-55774999-4	chr19	55774911	55775111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	33201.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	6.2335192131547	6.12263320999026	6.23462152914288	6.47299254428287	6.15938508992578	6.29128887711974	6.02054063577569	6.00252170119515	-0.248421812038194	0.294996748318092	0.607094386576849
Merged-chr11-97800178-4	chr11	97800050	97800250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010688, intron 1 of 6)	CpG	585.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	5.08498885936836	4.57992063094497	5.18195817074538	4.93157492015967	4.86977230943449	4.8840387345114	5.21577123486283	5.79710140621329	0.541267239524519	0.155848561968444	0.441705659838286
Merged-chr18-62164523-7	chr18	62164382	62164582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER103C|DNA|hAT-Charlie	15499.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	5.14683049478551	5.65742410248907	5.39137623587599	5.31803925826821	5.16297846001073	5.06844268812167	5.01866735817648	5.33099805558415	-0.438265621579749	0.152284283354653	0.436247555234068
Merged-chr6-136813311-3	chr6	136813221	136813421	+	870.955566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021714)	TTS (NM_021714)	5073.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	4.72864128014694	5.11125267233097	5.19731367362084	5.075917822271	3.91506549238187	3.99109218312115	3.70697121737942	3.92353966578256	-2.890051348531	1.2634446394888e-10	9.51647894118240e-09
Merged-chr1-144299350-4	chr1	144299230	144299430	+	986.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER67B|LTR|ERV1	-50226.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	4.56679489546931	4.84209914491004	4.84630314791781	5.27066435773385	5.10367552645581	4.34353367617932	4.71199354279612	4.76947372986445	-0.304505117894941	0.444341024605535	0.730774412852539
Merged-chr4-95049401-4	chr4	95049324	95049524	+	910.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010591, exon 1 of 1)	3' UTR (NM_010591, exon 1 of 1)	2798.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	4.21886805871524	3.82487152894414	4.42798296823768	4.28041486515264	4.09864477766707	4.03824106486738	4.28737722702785	4.535127931178	0.111626155133497	0.796749151027064	0.92135824726854
Merged-chr11-6456276-4	chr11	6456166	6456366	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-11823.0	NM_001347064	77605.0	Mm.27624	NM_029938	ENSMUSG00000041126	H2afv	C530002L11Rik|H2a.z-2|H2av|Tg(Wnt1-cre)11Rth|Wnt1-Cre|Wnt1::Cre|Wnt1cre	H2A histone family, member V	protein-coding	3.79733027355845	4.45435980250005	4.02505212444867	4.46771369538759	4.54470443517081	4.14891894993805	4.24411458307106	4.02277255838991	0.0807063517114894	0.861505174543896	0.947687645950297
Merged-chr8-22706573-4	chr8	22706539	22706739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010546)	promoter-TSS (NM_010546)	-56.0	NM_001159774	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	6.36996348530874	6.11853025941232	6.82902400521884	6.37483628679773	6.32879921840666	6.37641986486652	6.47297043510117	6.08840860669711	-0.175843478751934	0.484062373828792	0.758242770560542
Merged-chr12-117481186-4	chr12	117481086	117481286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35293.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	8.90470078696313	9.12450804466032	8.77884288744938	8.68054299393741	9.0438132211175	9.11032977925644	9.0549215875279	8.85823335839589	0.17385351042303	0.28723154707348	0.598979176834825
Merged-chr11-103979611-4	chr11	103979521	103979721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007477, intron 3 of 4)	intron (NM_007477, intron 3 of 4)	12750.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	6.54705519090327	7.15445812220374	6.81859477501779	6.60478284760879	6.74540786378138	6.67428299690462	6.53132619474967	6.49226799266506	-0.259443689438764	0.264960121361426	0.576798987013639
Merged-chr16-94498220-4	chr16	94498140	94498340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007834, exon 8 of 8)	3' UTR (NM_007834, exon 8 of 8)	28389.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	6.79886174413451	6.76955129140217	6.46998885075635	7.32952308103957	6.09603898349563	5.87760707183654	6.29216186306479	6.43057280512356	-1.03117997958465	0.000145409497280148	0.0027822856470171
Merged-chr4-136144878-4	chr4	136144760	136144960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008321, intron 2 of 2)	CpG-10505	1038.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	6.81264210954585	7.40645352823176	7.16468398243839	6.74285586398555	7.19216918990526	7.58731538945405	7.15107449773728	7.20418033791732	0.325234548949919	0.160764867189035	0.449065319898293
Merged-chr10-98754470-3	chr10	98754370	98754570	+	809.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160172.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	3.9942280464751	4.04310230022654	3.99485082616776	3.95322155753524	3.77889160947715	3.50780960551809	3.63101167097679	3.52283260413678	-1.10979655921804	0.0191646146134743	0.124307614949071
Merged-chr6-127582109-4	chr6	127582032	127582232	+	936.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033464, intron 1 of 6)	intron (NM_001033464, intron 1 of 6)	4157.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	4.70751539235339	4.2125362636749	4.19938166869216	4.78155779096399	4.52062441253589	4.32692727172344	4.71972256360293	4.51722075517728	0.0255107089962777	0.949923980078886	0.982126657618726
Merged-chr3-88533550-2	chr3	88533450	88533650	+	779.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029890, intron 1 of 1)	intron (NM_001029890, intron 1 of 1)	1155.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	2.47536704398693	2.45111331038755	2.33390844429875	2.09647857615012	2.31409068979856	2.71336492777764	2.59313469447011	2.53995292338763	1.14339769407576	0.127439538109974	0.397276699650935
Merged-chr4-91376502-1	chr4	91376402	91376602	+	775.0	f0_balb.idr	promoter-TSS (NM_001357188)	promoter-TSS (NM_001357188)	-6.0	NM_001347149	15569.0	Mm.318042	NM_010486	ENSMUSG00000008489	Elavl2	Hub|mel-N1	ELAV like RNA binding protein 1	protein-coding	3.45956534317508	3.36944969536296	3.78126184053467	3.72594556612326	2.8219577166536	2.90794790311087	3.22044483713364	3.23052147774793	-2.17435145716261	0.000708072448658231	0.010216652200573
Merged-chr4-133879370-3	chr4	133879244	133879444	+	757.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009097, intron 2 of 21)	intron (NM_009097, intron 2 of 21)	-4613.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	3.96923606470224	3.9599859699239	3.96984724048291	3.57482692597086	3.65272263721516	3.8933961883903	3.90625673374608	3.71657389624238	-0.216019328392063	0.645744704342444	0.850938856065737
Merged-chr10-51497522-3	chr10	51497318	51497518	+	644.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013532)	TTS (NM_013532)	6520.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	3.73076675758163	4.26960742666372	3.62717171971658	3.36763416729105	3.57895181414382	3.63261567070602	3.50059199080389	3.25324853012459	-0.906731717930057	0.108295332467843	0.363192408916317
Merged-chr12-40606027-3	chr12	40605861	40606061	+	996.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	159908.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	2.94714639097372	3.11446005353287	3.05890582620986	2.89877056757576	2.83624841846078	2.64438096253562	2.68357471939706	2.75870653689905	-1.25505184797713	0.0545692210944259	0.243920031919125
Merged-chr11-31850549-4	chr11	31850458	31850658	+	913.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-20382.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	4.24509751016795	3.73585195471803	4.16385978448501	4.41553634840323	4.06542899040035	3.63703661436804	4.01250740012618	3.64869514676119	-0.824797901088264	0.0940093277229756	0.335413029473367
Merged-chr16-44349510-3	chr16	44349383	44349583	+	942.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144550, intron 1 of 17)	intron (NM_144550, intron 1 of 17)	2082.0	NM_144550	212514.0	Mm.24035	NM_144550	ENSMUSG00000043065	Spice1	Ccdc52|D16Ertd480e	spindle and centriole associated protein 1	protein-coding	3.33434492277675	3.37568615802226	3.61099231555239	3.63495325441728	2.96598715403783	3.56895062296985	3.38205269189232	3.7495819130472	-0.173183395546707	0.767028738009052	0.908848357683219
Merged-chr3-152568889-3	chr3	152568805	152569005	+	975.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355635, intron 6 of 8)	intron (NM_001355635, intron 6 of 8)	-98008.0	NR_040386	99542.0	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA	4.21310632118035	3.83835818402963	4.09171030455421	4.34250229552376	3.3621785819812	3.75405943530697	3.73577285974247	3.69172126676458	-1.50104318896296	0.00224181085031484	0.0255311767223296
Merged-chr19-47050802-2	chr19	47050702	47050902	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027654, exon 1 of 10)	exon (NM_027654, exon 1 of 10)	104.0	NM_001360632	71041.0	Mm.35413	NM_027654	ENSMUSG00000025050	Pcgf6	4933407A11Rik|AI604840|MBLR|Rnf134	polycomb group ring finger 6	protein-coding	2.88591449705739	2.78490964440084	2.88629697811184	2.61425856673469	2.90618538216421	2.80305355637018	2.62068715084251	2.8248969998693	0.0341667113015902	0.957406527232259	0.984815156534365
Merged-chr1-144006707-4	chr1	144006615	144006815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2566.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	7.64173452057384	7.650804618733	7.6681763251123	7.81936409449293	7.68741764202351	7.83706027316914	7.40453409291013	7.41613362592117	-0.134378397685872	0.467142414109771	0.746801265647702
Merged-chr17-71187906-3	chr17	71187775	71187975	+	857.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	3897.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.52171395617529	3.39060005777059	3.46741313007468	3.1430837411716	3.82352130951479	3.63921759357968	3.45382916748999	3.34873475891257	0.699905330005904	0.183083724959727	0.479931757527872
Merged-chr19-53170824-4	chr19	53170732	53170932	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013758, intron 1 of 15)	intron (NM_013758, intron 1 of 15)	26835.0	NM_013758	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	4.05633773893073	4.15631766496942	4.25105877627841	4.66620541763906	4.02204714785176	4.07153561600722	4.4375221344444	4.45560667540337	-0.156713513645349	0.722830954164863	0.88928524667289
Merged-chr11-78536299-4	chr11	78536207	78536407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159392)	promoter-TSS (NM_001159392)	-47.0	NM_009395	21927.0	Mm.386774	NM_009395	ENSMUSG00000017615	Tnfaip1	Bacurd2|Edp-1|Edp1|Tnfip1	tumor necrosis factor, alpha-induced protein 1 (endothelial)	protein-coding	8.39772745061425	8.65944806922725	8.38325313134879	8.2387713364666	8.45032437644551	8.62324469939874	8.07305707367599	8.3777946183812	-0.0381749159487648	0.835802893319798	0.937525437210191
Merged-chr7-110718742-3	chr7	110718632	110718832	+	896.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49474.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	3.62158993073982	3.53496837961622	3.51235636883849	3.83631049956217	3.54748235075677	3.68409594858519	3.65852577126786	3.51054478184311	-0.149778328930236	0.759189984799285	0.905479988047768
Merged-chr4-21712403-1	chr4	21712303	21712503	+	664.0	f0_balb.idr	Intergenic	RMER21A|LTR|ERV1	-15298.0	NM_001290422	51813.0	Mm.278584	NM_016746	ENSMUSG00000028252	Ccnc	AI451004|AU020987|CG1C	cyclin C	protein-coding	3.52839805063246	3.65078961337235	3.74929315823886	3.68990011570365	3.46069800949345	4.05688230111276	3.73376361927798	3.89083126677845	0.413383341448595	0.396349671187893	0.69519327480908
Merged-chr15-78771928-4	chr15	78771834	78772034	+	899.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008595, intron 1 of 7)	intron (NM_008595, intron 1 of 7)	1511.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	4.36330128049396	4.42098100848278	4.40545868117834	4.2794830417661	3.95779480539161	4.49285983727672	4.21241052686728	4.31840532508128	-0.281900118479384	0.4819544866812	0.756902916640137
Merged-chr2-57114657-2	chr2	57114557	57114757	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001139509, intron 1 of 7)	CpG	381.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	4.92115575059875	5.14781601587301	5.5082147774558	5.23599138914875	5.32848608605376	5.02100008398808	5.64965802186547	5.88349520064495	0.513426380479339	0.127265841166778	0.396918276733565
Merged-chr4-135286999-4	chr4	135286914	135287114	+	893.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14254.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	4.55587356232006	4.16923112156528	4.43310979577491	4.7942840814389	4.43536952191815	4.42471449861728	4.53542775769452	4.5922209673035	-0.0645350939272549	0.868826592834164	0.950862893339999
Merged-chr4-134548232-4	chr4	134548111	134548311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029100, intron 2 of 11)	intron (NM_029100, intron 2 of 11)	3955.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	7.3581157592531	7.55136721865078	7.31893489651433	7.29573959876291	6.88076147377783	7.33175450746179	7.0709258359645	7.49517586776285	-0.237247576722207	0.257930801801732	0.569755868563229
Merged-chr19-40744399-3	chr19	40744312	40744512	+	889.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	84642.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	4.07827906386619	3.93479924748528	3.81087108522521	3.47376207126171	3.42593639181901	3.93289091521514	3.69218133740663	3.53319953444054	-0.543497890074829	0.291589549243315	0.603923895760175
Merged-chr17-10317397-4	chr17	10317307	10317507	+	814.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021881, intron 1 of 6)	intron (NM_021881, intron 1 of 6)	1954.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	4.16246158896952	4.71023069523575	3.75000940708376	3.88066306460033	3.95468702426554	4.04438077755225	3.95597542334094	3.97035521486583	-0.519613315501862	0.286280155883657	0.597955725560268
Merged-chr7-27591518-4	chr7	27591395	27591595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110208)	promoter-TSS (NM_001110208)	-57.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	7.40817354732469	7.70248144072938	7.45876323961558	7.16644181585829	7.79066424266922	8.02356885117095	7.45043997695458	7.44389899294725	0.34219576433933	0.114086543415581	0.373608669167326
Merged-chr3-90248081-4	chr3	90247987	90248187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013901)	promoter-TSS (NM_013901)	-105.0	NM_013901	30791.0	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	7.36891765399252	7.59668238259297	7.34967859593627	6.99247860657409	7.6943336527384	7.87606100805102	7.18292702881951	7.48145355027999	0.329593932105486	0.144866237048842	0.424036712956412
Merged-chr2-102898862-4	chr2	102898789	102898989	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	2776.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	5.24331303977154	4.84164150369052	5.01438446383974	5.03546988779383	4.26333896366609	4.60557535077054	4.67091356208028	4.7684239988546	-0.964046909818939	0.00701291717229086	0.0609564576146649
Merged-chr2-129502847-1	chr2	129502747	129502947	+	625.5	f0_balb.idr	intron (NM_177653, intron 1 of 6)	RLTR18-int|LTR|ERVK	33755.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	3.0770421559323	3.24981451438827	3.32092080107244	3.34192300240315	3.13037186920492	3.25329415709285	3.30799183285545	3.52335987906897	0.183861873188449	0.736672115077373	0.896043754662457
Merged-chr8-94093611-3	chr8	94093493	94093693	+	700.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026116, intron 1 of 16)	intron (NM_026116, intron 1 of 16)	5218.0	NM_026116	67378.0	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	2.87364026365868	2.8501365557043	2.73206769919775	3.0994654260053	3.04076646967176	3.17206568091212	3.21211296465362	3.11727344210898	0.916530496796918	0.137158796361483	0.411829324483845
Merged-chr3-87330947-4	chr3	87330761	87330961	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-27020.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	4.70382999901094	4.75761727725726	4.91932927011475	5.01596535393069	4.68858246063603	4.47793398225887	4.64348193007495	4.81330835115428	-0.424620827089924	0.21873680536997	0.526031051740966
Merged-chr13-10107497-4	chr13	10107404	10107604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 3 of 4)	MER105|DNA|DNA	253299.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	5.55006612758968	5.48323274151871	5.49487749976951	5.78016962151458	5.53292186817705	5.67033891931081	5.60245666614955	5.79538897072756	0.0822708408828733	0.761308168732184	0.906512173824769
Merged-chr2-150837041-3	chr2	150836953	150837153	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 10 of 12)	intron (NR_151505, intron 10 of 12)	5517.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	4.64297727957115	3.80113192153361	4.90189725521798	5.49602664497584	3.79707447256249	3.95954949322975	3.876984253353	3.95152814161966	-2.30253981864459	1.95265096936983e-05	0.000497985465241042
Merged-chr11-53735283-3	chr11	53735200	53735400	+	892.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14506.0	NM_010558	16191.0	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	3.60351904435396	4.00592412092461	3.66055561501133	3.61813008171035	3.8678434081353	3.93744567517352	3.40735420036979	3.86265453740072	0.162525715744061	0.742034679595235	0.898417179766546
Merged-chr7-30795132-4	chr7	30795025	30795225	+	830.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7220.0	NM_001033131	64661.0	Mm.268157	NM_001033131	ENSMUSG00000074199	Krtdap	Kdap|sk221	keratinocyte differentiation associated protein	protein-coding	3.60433121046961	3.84921600938743	3.54294640186837	3.66064377949193	4.03627558994693	3.89538024404061	3.86054906182263	4.21641387992872	0.964459253123533	0.0329267405932083	0.178105666743976
Merged-chr4-136285504-4	chr4	136285403	136285603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009557)	promoter-TSS (NM_009557)	-564.0	NM_009557	22704.0	Mm.1504	NM_009557	ENSMUSG00000051351	Zfp46	AI426962|Mlz-4|Zfp-46|Znf436	zinc finger protein 46	protein-coding	6.67526031168005	6.49621933948508	6.23170228367219	6.43696685409636	7.01674662846417	6.58813099856935	7.04674751567713	6.71584215149795	0.566925201175821	0.0117831432661609	0.0887245370696253
Merged-chr4-6376741-4	chr4	6376624	6376824	+	890.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	11044.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	4.42846912665898	4.31631862656069	4.79289116827622	4.80233831525755	4.15526098673229	4.32671822866986	4.02310182212256	4.46776592219806	-0.847121290349413	0.037935570845376	0.194890589014045
Merged-chr19-29940443-4	chr19	29940298	29940498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360725, intron 2 of 8)	intron (NM_001360725, intron 2 of 8)	-5392.0	NM_001164724	77125.0	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	8.23837522397768	8.02652035056264	8.32274107443397	8.33477144368261	8.13373612320454	8.07739811919808	8.17783052188981	7.87172405223943	-0.21278399779866	0.206271990923807	0.510210725476936
Merged-chr9-114527190-3	chr9	114527063	114527263	+	809.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042503, intron 1 of 3)	intron (NM_001042503, intron 1 of 3)	-30619.0	NM_009916	12773.0	Mm.1337	NM_009916	ENSMUSG00000047898	Ccr4	C-C CKR-4|CHEMR1|Cmkbr4|LESTR|Sdf1r	chemokine (C-C motif) receptor 4	protein-coding	2.9548008756482	3.21840288660354	3.0144772191898	2.99413817658624	2.99631051833895	2.93382919738055	2.68037304185251	2.82651144385233	-0.786075892255963	0.210130560654456	0.514583471300609
Merged-chr10-42118716-4	chr10	42118609	42118809	+	936.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100327.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	5.11949806756863	5.3801754650693	5.21523669140895	5.49123044454779	5.10991398105557	4.78699175945907	5.30478627837334	4.69385367395983	-0.593886954930578	0.0749684647198097	0.295420492182436
Merged-chr5-23433413-4	chr5	23433329	23433529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026984)	promoter-TSS (NM_026984)	924.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	7.82893392999695	7.97119703106062	7.81442076837392	8.01792506746564	8.34460844571949	8.31933534396858	8.17430922132981	8.17250556203754	0.434304615327302	0.00681280007372515	0.0597055277576561
Merged-chr18-78138455-4	chr18	78138350	78138550	+	912.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171011, intron 1 of 8)	intron (NM_001171011, intron 1 of 8)	3669.0	NM_001171011	108052.0	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	4.31143825975996	4.59981041392753	4.39892765383328	4.16299167842509	4.59636437505141	4.29616893195874	4.37893148360549	4.16737551185673	0.0248386700811245	0.950439265940304	0.982264362614525
Merged-chr2-119163339-4	chr2	119163234	119163434	+	905.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4454.0	NM_177157	320415.0	Mm.86373	NM_177157	ENSMUSG00000046814	Gchfr	2010323F13Rik|GFRP|P35	GTP cyclohydrolase I feedback regulator	protein-coding	5.39536296839246	4.5606577027592	4.97766697165609	5.06851764833089	4.33306213807801	4.31706759138937	4.1684009565225	4.57541131787382	-1.46631986351069	0.000240804547277732	0.00423529203624454
Merged-chr19-24992368-2	chr19	24992291	24992491	+	693.833374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-7138.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	2.87134926514974	2.8289762353682	3.24286076272516	3.11790723706333	2.67342379248164	2.77834799174242	2.59299293371674	2.67162941867384	-1.70106430798024	0.0130014299993855	0.0949937164777518
Merged-chr2-16135622-4	chr2	16135541	16135741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 33 of 38)	intron (NM_001310455, intron 33 of 38)	-220663.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	5.73419990440038	5.84448602802964	5.70873733762239	6.50940468390707	5.87245323512491	5.74687596032746	6.02628246953639	5.99059891809488	-0.171314195601087	0.569786328389788	0.809561615168898
Merged-chr11-20143907-4	chr11	20143801	20144001	+	848.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-30950.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	3.92572490620871	4.33219571496908	4.25033044325463	3.89750613829248	4.21521094499529	3.93774570931773	3.80209477481488	4.1188322117323	-0.191138346621008	0.669360854546587	0.863479905771059
Merged-chr15-50840651-4	chr15	50840535	50840735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 2 of 5)	MIR|SINE|MIR	48414.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	7.59804896052681	7.8336088867157	7.80136719873469	8.07438095566876	7.59770927147492	7.43685674191985	7.49925308753539	7.26513666760437	-0.510692691767731	0.00730308209224963	0.0627885107191975
Merged-chr5-113787152-2	chr5	113787052	113787252	+	954.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13200.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	3.11888829490103	3.4019364647475	3.40560102888031	3.00807894266471	3.3269954165654	3.29356306542118	3.2293581651858	3.18020765013582	0.0905123948414552	0.871017772362706	0.951515750732959
Merged-chr3-139110245-4	chr3	139110141	139110341	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35040.0	NM_001356388	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	4.99537567397568	4.89501740691228	4.96119838530719	5.2947564148072	5.07511321677905	4.94723954304084	5.07087780766933	4.9578845569385	-0.0939458381715983	0.770078640362522	0.910038310903904
Merged-chr11-95749837-4	chr11	95749725	95749925	+	942.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_201609, exon 1 of 5)	exon (NM_201609, exon 1 of 5)	758.0	NM_201609	268469.0	Mm.389038	NM_201609	ENSMUSG00000075595	Zfp652	9530033F24Rik|ZNF652	zinc finger protein 652	protein-coding	4.66122948079141	4.7734559772015	4.40281879176755	5.02236009585847	4.90771293117579	4.32510424701348	4.47507676924792	4.84063992559819	-0.168979019178819	0.669337072561202	0.863479905771059
Merged-chr10-95939941-2	chr10	95939841	95940041	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001932)	promoter-TSS (NM_001001932)	-722.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	3.17642993819401	3.61572843973093	3.30071588080119	3.03510489492966	3.1951334087244	3.63606788325821	3.22850657599584	3.41202660944151	0.281616175608394	0.621777516690365	0.838003935782923
Merged-chr8-88118686-4	chr8	88118598	88118798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029074)	promoter-TSS (NM_029074)	-61.0	NM_029074	382030.0	Mm.216574	NM_029074	ENSMUSG00000036810	Cnep1r1	5033428A16Rik|NEP1-R1|Tmem188	CTD nuclear envelope phosphatase 1 regulatory subunit 1	protein-coding	8.06594887907577	8.05064917822408	8.39568731696384	8.0626658181444	7.93992100776354	8.01052187906814	7.85586543510846	8.08117690941308	-0.224511652848427	0.187269638804358	0.485544953937837
Merged-chr15-91290735-3	chr15	91290629	91290829	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033633, intron 7 of 9)	intron (NM_001033633, intron 7 of 9)	-98722.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	3.20393170819299	3.09852520844876	3.37733093559205	3.2227151836466	3.12817951301178	3.54643433252733	3.56027076930772	3.07365012690304	0.413989585109945	0.462498812737109	0.74406027917491
Merged-chr11-43433717-4	chr11	43433633	43433833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148673)	promoter-TSS (NM_148673)	2.0	NM_198936	193116.0	Mm.28200	NM_148673	ENSMUSG00000020409	Slu7	AU018913|D11Ertd730e|D3Bwg0878e	SLU7 splicing factor homolog (S. cerevisiae)	protein-coding	6.74187549367184	6.96510664177899	6.57322119756796	6.59801691615435	6.89181622986156	7.02933226294725	6.36340414129111	6.617136985139	0.0375480761982371	0.873937731673053	0.952744110383191
Merged-chr16-33520059-4	chr16	33519957	33520157	+	945.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 1 of 11)	intron (NM_001083902, intron 1 of 11)	1462.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	5.30918848120881	4.84036142460538	5.50895858088827	5.63178796452545	4.68728123850755	4.74593894639867	4.54127534666379	4.55883307291103	-1.44257233368366	6.54411193689018e-05	0.00141840238598023
Merged-chr15-76552841-2	chr15	76552741	76552941	+	980.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13898.0	NM_029643	52710.0	Mm.28597	NM_029643	ENSMUSG00000022560	Slc52a2	2010003P03Rik|D15Ertd747e|GPCR42|Gpr172b|PAR2|mRFT1	solute carrier protein 52, member 2	protein-coding	3.1028558898159	2.99394298882398	3.37107984253509	2.70967376725413	3.11060203709158	3.21602430870895	2.96835546447635	3.0407901541529	0.11532383783383	0.852851517690304	0.944672349828292
Merged-chr17-51220100-4	chr17	51219987	51220187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-40735.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	7.05596661802434	7.2320897572141	7.45809366697469	7.26173606693403	7.06747715652652	6.92746002634441	7.25797946418533	7.31977069942871	-0.146967978806387	0.45857953666963	0.74144172337427
Merged-chr18-77938394-4	chr18	77938283	77938483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195633)	promoter-TSS (NM_001195633)	-84.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	7.71139110052141	7.66782858361144	7.40055201030851	7.40816606313486	7.65438234015115	7.75671254729312	7.43261265459899	7.44505091438845	0.0408660805627473	0.827431485350317	0.93381914867164
Merged-chr12-95747538-3	chr12	95747439	95747639	+	793.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	55313.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	3.38110838346031	3.37265000398835	3.65290214472149	3.69638566118681	3.6918040562763	3.66723637236944	3.53687401142203	3.11437836243793	-0.0456367335159986	0.933812188956849	0.976147238996645
Merged-chr2-131235115-4	chr2	131235018	131235218	+	972.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144888, intron 1 of 6)	intron (NM_144888, intron 1 of 6)	1055.0	NM_144888	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	5.42827976419481	5.20047947429564	5.13057026311403	5.79595906564495	5.06591277904366	4.87904756061099	5.29152742192468	5.02200588583946	-0.665060450811243	0.0466168047507143	0.221963846769088
Merged-chr9-21901656-4	chr9	21901535	21901735	+	991.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16548.0	NM_031874	19340.0	Mm.260157	NM_031874	ENSMUSG00000019066	Rab3d	C130057E11Rik	RAB3D, member RAS oncogene family	protein-coding	4.81589179961628	4.79214847033051	4.38412773419709	4.91488877845711	4.84849338358584	4.91482743426796	4.96393743936263	4.91914464770762	0.30911625139348	0.368344851401441	0.672801924039702
Merged-chr13-100750950-4	chr13	100750845	100751045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6286.0	NM_025369	66128.0	Mm.306173	NM_025369	ENSMUSG00000061474	Mrps36	1110018B13Rik|S36mt	mitochondrial ribosomal protein S36	protein-coding	5.22749535201168	5.51102838048984	5.12883796768393	4.9846373610459	5.22282091188435	5.55165462907072	5.37963957130679	5.34634248353792	0.284145602771838	0.353466553775215	0.660273623806948
Merged-chr18-70436023-3	chr18	70435912	70436112	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-36442.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	4.76383085744114	4.81611097560537	5.24338156276093	4.73267170213809	5.41620454006464	5.2907617560061	5.77477213164736	5.5150180846053	1.14170631105608	0.000310880216786555	0.00521767105650795
Merged-chr1-58725990-4	chr1	58725888	58726088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	-4564.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	6.68731230037895	7.32566267741556	6.28410169997151	6.02891351520388	7.09352038463983	7.03377055349922	6.82226380733694	6.23756180566838	0.216189189409411	0.650478836358769	0.853294802585927
Merged-chr7-101763078-2	chr7	101762978	101763178	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009191, intron 6 of 15)	intron (NM_009191, intron 6 of 15)	-55235.0	NM_008887	11859.0	Mm.5028	NM_008887	ENSMUSG00000007946	Phox2a	Arix|Phox2|Pmx2|Pmx2a|Px2a	paired-like homeobox 2a	protein-coding	3.69440414393246	4.0732819161155	3.28988014360843	3.34803891409429	3.39125216095104	3.59611006560672	3.62885736152447	3.53433013240631	-0.317742810646517	0.563408268844745	0.806330293919776
Merged-chr5-147077557-4	chr5	147077523	147077723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_181730, exon 1 of 3)	5' UTR (NM_181730, exon 1 of 3)	277.0	NM_009087	20018.0	Mm.317557	NM_009087	ENSMUSG00000029642	Polr1d	1110003G10Rik|AC19|RPA16|Rpo1-3	polymerase (RNA) I polypeptide D	protein-coding	6.21959697116023	6.17306447877569	6.16154607640748	5.97428396253221	6.11700930420942	6.41506942072531	6.06830688781283	6.5220560372742	0.248794126909209	0.302738697717057	0.615221435062481
Merged-chr16-77251646-4	chr16	77251548	77251748	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77680.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	5.22878877429164	5.61616023717982	5.2932444544166	5.68265608372909	5.49772304080526	5.372733659958	5.13776277917972	5.08883143133169	-0.341676975109456	0.269009040118622	0.580600870135562
Merged-chr5-146805185-4	chr5	146805094	146805294	+	971.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10238.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	6.07718869115868	5.23077581248792	6.02520667065026	6.19422245806868	5.06414662306898	4.86863064659259	4.65444797291654	5.21204023615102	-1.70775334657855	1.64792259118768e-06	5.50692404310555e-05
Merged-chr8-119347669-3	chr8	119347575	119347775	+	870.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024219, intron 3 of 3)	intron (NM_024219, intron 3 of 3)	3137.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	4.27583439711154	4.01815906346152	3.60416164003606	4.13903940137189	3.70866684472799	3.72244169509699	3.96672917263168	3.93373452925985	-0.560506749028358	0.235481327024118	0.545490589918757
Merged-chr4-47262809-4	chr4	47262743	47262943	+	801.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 10 of 39)	intron (NM_009928, intron 10 of 39)	54831.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	3.27330711480908	3.15241361209201	3.10459081191988	3.10084941895224	3.19601679228858	3.01664222020935	3.03296863471155	3.27191772108369	-0.0736945707262091	0.895052957029128	0.96073210268323
Merged-chr14-16244506-3	chr14	16244401	16244601	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359882, intron 1 of 3)	intron (NM_001359882, intron 1 of 3)	-1170.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	3.85992543499303	3.94394909834501	4.22075669166642	3.51192161952023	5.4346442315679	5.11614389190734	4.82177829082873	4.87610608472541	2.79894776433289	1.06847818887568e-11	9.59056860100656e-10
Merged-chr6-39222720-4	chr6	39222609	39222809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-15936.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	7.00949629415847	6.43644223759833	6.76647766355553	7.10378345994267	6.61859911212723	6.79201033828898	6.6133695202793	6.6732410342452	-0.271702205506127	0.240202292066605	0.550710524608932
Merged-chr11-3172506-7	chr11	3172385	3172585	+	984.228577	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 6 of 32)	B3|SINE|B2	20978.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.20568836305801	4.49709875741561	4.91701607485483	5.10943816940735	4.14169239848223	4.71793673260081	4.33383527906668	4.53738630904715	-1.12675415700069	0.00464516613259212	0.0449970441142861
Merged-chr13-55571120-4	chr13	55571013	55571213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145382)	promoter-TSS (NM_145382)	7.0	NM_145382	212483.0	Mm.35661	NM_145382	ENSMUSG00000021495	Fam193b	IRIZIO|Kiaa1931	family with sequence similarity 193, member B	protein-coding	6.47787458514107	6.59224463260944	6.20484517057629	6.22447189984144	6.71608666990859	6.38187845859225	6.32590585000757	6.1589441412339	0.0655702283528645	0.789689521785598	0.918573649782491
Merged-chr10-34019713-4	chr10	34019612	34019812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025614)	promoter-TSS (NM_025614)	-96.0	NM_025614	66521.0	Mm.28528	NM_025614	ENSMUSG00000019782	Rwdd1	0710001K08Rik|2610002D06Rik|2700069A07Rik|IH1	RWD domain containing 1	protein-coding	8.63651932014608	8.73534123993251	8.65117806008922	8.66872189742372	8.61312212528497	8.57560749143536	8.56686143864368	8.30296161352189	-0.190173663238582	0.210423155287268	0.514930528827314
Merged-chr2-132221741-4	chr2	132221669	132221869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26019.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	6.63466916574509	6.77921794877557	7.04338481536933	6.98746739230183	6.81698459976928	6.6784024502843	6.75239881534926	6.85124137089561	-0.140177770804385	0.496517148737676	0.766462679028389
Merged-chr4-134187180-4	chr4	134187082	134187282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144527)	promoter-TSS (NM_144527)	-97.0	NM_144527	70012.0	Mm.26542	NM_144527	ENSMUSG00000037443	Cep85	2410030J07Rik|AI173272|AI173504|Ccdc21	centrosomal protein 85	protein-coding	8.72911297479055	8.89692242949434	8.50873315439577	8.54794394315516	8.79302414757385	9.13992394086406	8.67812416018787	8.69063062397192	0.198953158051634	0.265215885581296	0.576971825413861
Merged-chr15-73757323-2	chr15	73757223	73757423	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001166389, exon 6 of 6)	3' UTR (NM_001166389, exon 6 of 6)	9297.0	NM_008975	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	2.8146402497739	2.73680790609065	3.00202376869313	2.97720659705982	2.98460154710498	2.98738795933818	2.93219350966632	3.05709792285105	0.420675673105912	0.480906494612385	0.756237807870056
Merged-chr4-62359551-7	chr4	62359362	62359562	+	814.738098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 1 of 27)	intron (NM_001355385, intron 1 of 27)	1134.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	3.95047249805045	3.87360973170226	3.90262705762312	3.43439660868742	3.8465154426187	3.80877737620518	4.02438774576995	4.1255716874983	0.468373820867755	0.321191489067339	0.632926759819671
Merged-chr6-142573042-4	chr6	142572952	142573152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-1438.0	NM_001330366	16523.0	Mm.1482	NM_008428	ENSMUSG00000030247	Kcnj8	AI448900|Kir6.1|gnite|slmbr|sltr|uKATP-1	potassium inwardly-rectifying channel, subfamily J, member 8	protein-coding	5.20901973686807	5.32257684420224	5.7261012391703	5.56112048357704	5.08199286446199	5.62692502376603	5.15074336673191	5.47692611780383	-0.231296200142381	0.459997051523766	0.742300655594817
Merged-chr9-111095974-3	chr9	111095901	111096101	+	654.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22110.0	NM_027742	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	3.25931249696694	3.42117163226256	3.6168761661883	3.01974141899279	3.15836783819878	3.18169840600167	3.30421618788093	3.19791824827169	-0.474933606158039	0.407912676060267	0.704075086986739
Merged-chr3-129969539-4	chr3	129969428	129969628	+	912.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025779, intron 1 of 7)	intron (NM_025779, intron 1 of 7)	678.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	4.29012640982251	4.77323973344803	4.24172122202693	4.84352975666734	4.34154899282364	4.31813402549519	4.36424317270668	4.69657242267418	-0.327457807672646	0.425201801393188	0.716745286615087
Merged-chr11-80094681-4	chr11	80094586	80094786	+	864.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001029856, exon 2 of 23)	exon (NM_001029856, exon 2 of 23)	5286.0	NM_001029856	237877.0	Mm.89551	NM_001029856	ENSMUSG00000017550	Atad5	C130052G03Rik|FRAG1|Gm17	ATPase family, AAA domain containing 5	protein-coding	3.59196504975217	3.91096051805535	3.70723389864923	3.7116005890899	4.042204762962	3.64754545070287	3.84614971814459	4.04123566146791	0.500815429471771	0.275372052522331	0.587146371700776
Merged-chr3-79809359-4	chr3	79809231	79809431	+	878.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33331.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	4.88629793384475	4.69836498976398	4.62317990390873	4.40229302032186	5.05063752541896	5.05820169735501	4.68222941184022	4.62020792010327	0.469465776503764	0.193443620585314	0.493676220631818
Merged-chr17-65772661-4	chr17	65772592	65772792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133685)	promoter-TSS (NM_133685)	60.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	6.0810940792767	6.24730163991015	6.12587060754483	6.56348241856776	6.23279276489242	6.32431668814851	6.68108312067854	6.45860346182897	0.211304235036435	0.397011734354775	0.695569405558829
Merged-chr8-82401279-4	chr8	82401187	82401387	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	1299.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	5.22433044123482	5.58131437986585	5.44502611352655	5.45330215902573	5.77663574573453	5.80517816307333	5.50093919744697	5.22165391788601	0.28642905017909	0.328868460170039	0.640144325858488
Merged-chr7-118741841-3	chr7	118741737	118741937	+	692.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 1 of 30)	intron (NM_027815, intron 1 of 30)	1566.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	3.12069389754082	2.83505565395445	2.98744223111881	2.8066694093989	3.36228912286211	3.17059874176091	3.22953928315891	3.83356675933727	1.87871754632974	0.00151213934006358	0.0187971648771194
Merged-chr18-78312281-4	chr18	78312184	78312384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207651, intron 3 of 21)	intron (NM_207651, intron 3 of 21)	-105844.0	NM_001110274	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	5.87171534289479	6.29192881392001	5.9225996338561	6.29622312947287	6.13101158262423	6.38202307906062	6.46795920876642	6.40035030416137	0.327966432821602	0.186193042532792	0.484113766444254
Merged-chr5-90324405-3	chr5	90324325	90324525	+	661.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_198010, intron 1 of 32)	B1_Mur1|SINE|Alu	41760.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	3.55705309526921	3.32922372875974	3.16109511294073	3.50773229104959	3.45051429450247	3.39906994506927	3.3892440823322	3.28566578301113	-0.0678613751859678	0.897576085553094	0.961755066043397
Merged-chr5-72558210-2	chr5	72558110	72558310	+	678.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_153351, intron 2 of 21)	intron (NR_153351, intron 2 of 21)	1435.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	3.20548082775263	3.67095963406681	3.07199390668519	3.27702808393587	3.4615958559666	3.49861853056487	3.31513567914474	3.38252807409367	0.307130414878004	0.577362603574278	0.814090306448239
Merged-chr11-22971979-4	chr11	22971886	22972086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011663)	promoter-TSS (NM_011663)	-19.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	6.41189372428648	6.10863350761427	6.11292761694329	6.00856864480357	6.22952489803337	6.50166670370854	6.36346214386988	6.21017286304171	0.257366577704776	0.273318326016959	0.584869829166375
Merged-chr4-150257392-4	chr4	150257282	150257482	+	891.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20058.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	4.1005058853834	4.32174302466609	4.04582532319764	4.56044501500506	4.7440037433778	4.56423587982544	4.49459946210904	4.55142626334994	0.679087306337346	0.0929644254823248	0.33357198730702
Merged-chr1-4770003-4	chr1	4769888	4770088	+	647.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15738.0	NM_001177658	27395.0	Mm.182927	NM_025300	ENSMUSG00000033845	Mrpl15	HSPC145|MRP-L7|Rpml7	mitochondrial ribosomal protein L15	protein-coding	3.8703162201539	3.71693590348418	3.87089572230777	3.78875153155939	3.82504114909146	3.78574074826965	3.75792020532108	3.42618843165825	-0.291486732659236	0.534880935802241	0.789439320908779
Merged-chr4-130800727-4	chr4	130800634	130800834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	8197.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	6.71198313158114	6.84741107706321	6.98202248190049	7.25574813708438	7.09190476243807	6.85939155453594	7.32668348789949	7.09835436376324	0.172542998783402	0.434183340455661	0.723510148432482
Merged-chr4-99126991-4	chr4	99126896	99127096	+	856.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-6081.0	NM_026082	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	4.5501111792819	4.82595002019532	4.71727686992167	5.2775722902654	4.84453680536559	4.59057834949083	4.57372217400401	4.82610632608758	-0.363582278264659	0.338401619975077	0.648017142470682
Merged-chr11-117175175-4	chr11	117175077	117175277	+	934.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-24484.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	4.50407850322383	4.47764399890798	4.42318327539319	4.24527262285153	4.29908436771137	4.71354129152335	4.48374336317905	4.08627160400295	0.00769240769715625	0.984511348946476	0.994316877108323
Merged-chr2-167225152-4	chr2	167225034	167225234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008968, intron 3 of 9)	MTC|LTR|ERVL-MaLR	15403.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	7.31974449200798	7.14966900518996	7.34137251352174	7.49968813089512	7.17122980513743	7.21138758183869	7.21077362181281	7.46107745605639	-0.101776037493689	0.593332047166672	0.822673791983725
Merged-chr12-102451701-4	chr12	102451593	102451793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11880.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	7.8376278079166	7.89932395266383	8.6265420277006	8.09524243482007	7.81974377321463	7.71227872036661	8.16031831789595	7.99305471160189	-0.283860276360311	0.199608936613865	0.501474545095065
Merged-chr12-91765362-4	chr12	91765269	91765469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	21067.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	7.3875688060752	7.66531987421125	7.59289922541513	7.70802650157546	7.78160390487245	7.31072975250212	7.40136801098373	6.95601002991289	-0.253886134241308	0.252362488793216	0.563645884616847
Merged-chr6-71144053-6	chr6	71143951	71144151	+	905.5610960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178413, intron 1 of 9)	CpG	329.0	NM_001033929	232078.0	Mm.37547	NM_178413	ENSMUSG00000054474	Thnsl2	BC051244|TSH2	threonine synthase-like 2 (bacterial)	protein-coding	4.0294719701569	4.01872635791248	4.7339733584817	4.08597795838682	4.35980330622039	4.40876061910335	4.2607317208218	4.59700132625238	0.395653126219475	0.356285121621709	0.662747123269611
Merged-chr1-107564841-4	chr1	107564751	107564951	+	952.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B|LTR|ERVK	-25155.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	4.67745110541475	4.78887345364976	4.55517325909086	4.98170068162532	4.79257907370997	4.34217116396013	4.99384267157383	4.5086117354862	-0.175948100366526	0.642000947871416	0.848955111735845
Merged-chr4-129508105-4	chr4	129508000	129508200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5481.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	6.65867607634594	7.7444221632583	6.57907471785069	6.05287704661273	6.98872882895008	7.28050503993472	6.47691859788206	6.18806555517413	-0.170903535931911	0.772827972742202	0.911052408089747
Merged-chr15-75903504-4	chr15	75903394	75903594	+	992.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029663, exon 3 of 10)	exon (NM_029663, exon 3 of 10)	5850.0	NM_001285433	66656.0	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	5.42846433988629	5.12658982006509	5.19716526454758	5.50991245503131	5.18022051723722	5.01129485695137	5.00292381651355	5.37148874531086	-0.338330104657881	0.274259203689202	0.586002337207509
Merged-chr8-82774156-4	chr8	82774061	82774261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145600)	promoter-TSS (NM_145600)	-35.0	NM_145600	30932.0	Mm.269248	NM_145600	ENSMUSG00000031711	Zfp330	BC008086|Noa36|Znf330	zinc finger protein 330	protein-coding	6.9150329770707	6.74332113887597	6.86356415611684	7.03657176418848	6.70668954491196	6.68653684802142	6.94384213526967	6.8451820212222	-0.147851600709705	0.464688389122282	0.745527089422867
Merged-chr16-34121010-4	chr16	34120930	34121130	+	907.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 33 of 59)	intron (NM_177357, intron 33 of 59)	-153992.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	3.70945049495353	4.06800593362889	3.91861250734136	3.97613166726586	3.91243281209615	3.76855886624975	3.99401028098187	3.81610375672095	-0.14737317137148	0.739448295221469	0.897296545139168
Merged-chr18-12154302-4	chr18	12154214	12154414	+	927.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024182, intron 12 of 12)	intron (NM_024182, intron 12 of 12)	-14416.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	4.77209914606566	4.16634787786186	4.1410693790639	4.47064921968601	4.82779637073884	4.42339793510194	4.57320507121251	4.55306509892834	0.439043382628921	0.270624498750562	0.58243909949623
Merged-chr6-34371867-4	chr6	34371790	34371990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12357.0	NM_172398	67861.0	Mm.70371	NM_172398	ENSMUSG00000061758	Akr1b10	2310005E10Rik|Akr1b16	aldo-keto reductase family 1, member B10 (aldose reductase)	protein-coding	6.18442571012709	6.30628425989331	5.93074939710737	6.11785865355384	6.10506111226253	6.05932109187359	6.21000864180545	5.97253884276317	-0.0809646422511583	0.731467944040981	0.893653675510084
Merged-chr11-101587881-4	chr11	101587796	101587996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359325, intron 4 of 7)	RMER19B|LTR|ERVK	5597.0	NM_001359325	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	6.81010790888843	6.71915666545021	5.96315197209075	6.48537046863774	6.68332818433448	6.2652096442451	6.65302155270532	6.79326863887027	0.120116895914866	0.646709935325211	0.851401409677112
Merged-chr12-84761450-4	chr12	84761315	84761515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 2 of 3)	MLTR14|LTR|ERV1	11697.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	7.66139784286765	7.84953409657054	7.3588197837911	6.880955587657	7.48586057478161	7.688181828327	7.05324953547388	6.90955808692085	-0.21240326351957	0.434988708668039	0.724190983166074
Merged-chr4-127022309-4	chr4	127022185	127022385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023603, intron 1 of 9)	CpG	984.0	NM_023603	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	6.92122043159642	7.34657136936977	7.25461109198268	7.11795312647317	7.30402722630737	7.62142361724249	7.44435326052019	7.26030151193845	0.325524621300668	0.0978372263099014	0.342731233402848
Merged-chr13-23552146-2	chr13	23552046	23552246	+	848.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175655)	promoter-TSS (NM_175655)	-503.0	NM_175655	319157.0	Mm.442307	NM_175655	ENSMUSG00000069274	Hist1h4f	-	histone cluster 1, H4f	protein-coding	3.26590736806508	3.60067350582404	3.39045458027723	3.42768547047094	3.67396057939317	3.50350791342613	3.54469171090543	3.79372129596246	0.678390288261741	0.17266222051056	0.466180791022311
Merged-chr17-56757576-4	chr17	56757492	56757692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008738)	promoter-TSS (NM_008738)	-44.0	NM_008738	18188.0	Mm.8074	NM_008738	ENSMUSG00000039481	Nrtn	NTN	neurturin	protein-coding	5.72470929416843	5.60442769993464	5.49100523197173	5.65453108630788	5.52946473576533	5.48406711283212	5.67290298486459	5.6732506891713	-0.0568237219071493	0.828486517974489	0.934169961374777
Merged-chr7-45896834-4	chr7	45896745	45896945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291064)	promoter-TSS (NM_001291064)	-134.0	NM_021482	58867.0	Mm.214217	NM_021482	ENSMUSG00000040231	Syngr4	1700016O14Rik	synaptogyrin 4	protein-coding	8.34004908969289	8.70875884335241	8.28551718149783	8.07232339294087	8.36057991925973	8.7010231702677	8.37143982701931	8.20979186449729	0.0666524949969475	0.737261429868339	0.896374281276027
Merged-chr10-99460965-4	chr10	99460873	99461073	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148198.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	5.69032614657886	5.42335611402326	5.4021760316494	5.95540018582534	5.41029864150857	5.42253347118103	5.18606120458048	5.274571639162	-0.570648293779821	0.0581335772167486	0.253289319046675
Merged-chr2-35452606-3	chr2	35452496	35452696	+	972.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	8853.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	4.47659346585248	4.50655432848905	5.67600581327977	5.34228343931213	4.19307641543145	3.99438909690129	4.36356289816185	4.05530855354341	-2.08097727254002	1.49001215198126e-05	0.000393680679160633
Merged-chr2-103945993-4	chr2	103945910	103946110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11985.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	6.61364860461298	5.91630904427272	6.42006601214435	6.7420289797438	6.62507093269562	6.44843367143364	6.56595716701352	6.36171143737883	0.0554050191589709	0.830195311574139	0.934844759338337
Merged-chr5-21175254-4	chr5	21175135	21175335	+	935.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1044.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	5.13938982598298	5.1466516476387	4.64311652754023	4.2425325374897	5.03546552805036	5.01837622650061	4.89181357677519	4.84027961983441	0.228637129658117	0.560821065990671	0.804731028246143
Merged-chr5-34636686-4	chr5	34636618	34636818	+	940.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001356979, exon 2 of 13)	exon (NM_001356979, exon 2 of 13)	494.0	NM_001356978	68294.0	Mm.34564	NM_026660	ENSMUSG00000001082	Mfsd10	0610009O03Rik|Tetran	major facilitator superfamily domain containing 10	protein-coding	4.91725106558563	4.47712853605143	4.72219320665309	4.14670290066726	4.46886195335559	4.33661066284937	4.18947256823208	4.88410822182851	-0.198285221471396	0.645812340370728	0.850980720782851
Merged-chr18-83938351-4	chr18	83938255	83938455	+	685.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	148207.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	4.17630892957187	3.83849173125981	3.94530421348942	3.98326270103675	3.93058826321986	3.71824944127305	4.15786019639949	4.33288413437738	0.173176738979268	0.698787538053255	0.878505428649175
Merged-chr11-98787025-4	chr11	98786930	98787130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8486.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	6.26850015647626	6.51711107533297	5.77556375267025	6.12647316381547	6.59354875519691	6.62697665884052	6.64780847266364	6.64879909914132	0.631451050224971	0.00860037362859158	0.0707624545728263
Merged-chr8-121850135-4	chr8	121850057	121850257	+	939.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20588.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	4.43946033444448	4.85916870460145	4.61534060672616	4.63772895645744	4.73709709246588	4.36593217830112	5.09349088170181	5.14137784835176	0.466747809974653	0.222030348274218	0.530047563717821
Merged-chr6-38968149-4	chr6	38968074	38968274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	49188.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	6.45228933882561	6.23929703348332	6.3312203461087	6.5221721508553	6.36661164177917	6.05232015639229	6.54626360990207	6.36281647757085	-0.0754384830254577	0.744169855434388	0.89923574268619
Merged-chr17-74457818-3	chr17	74457692	74457892	+	946.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 1 of 8)	intron (NM_001033367, intron 1 of 8)	1316.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	4.5862453827671	4.28103621442457	4.62348287546951	4.5496000354184	4.73914422572401	4.10841553882685	4.23148482272922	4.19806649491966	-0.352078850192747	0.398029634901791	0.696290186111101
Merged-chr7-25268140-4	chr7	25268049	25268249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 1 of 20)	intron (NM_001302811, intron 1 of 20)	450.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	9.35617763007481	9.54430823059451	9.51777031692744	9.36375182615839	9.56179231031108	9.73557844811717	9.66068263219038	9.52705053339965	0.215369461442275	0.122846608540799	0.388488327346818
Merged-chr1-75435976-4	chr1	75435877	75436077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357171)	promoter-TSS (NM_001357171)	41.0	NM_001357169	69080.0	Mm.23951	NM_133708	ENSMUSG00000033021	Gmppa	1810012N01Rik	GDP-mannose pyrophosphorylase A	protein-coding	5.92373476774787	5.84492259158682	5.53295479288053	5.74384647145315	5.35083844054048	5.73754998851826	5.85191948369001	5.63889740892802	-0.203227119723269	0.461566446515082	0.743302830494533
Merged-chr1-43520788-2	chr1	43520693	43520893	+	618.75	f0_balb.idr|f0_c57.idr	intron (NM_010879, intron 2 of 4)	intron (NM_010879, intron 2 of 4)	75042.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	3.5699975665104	3.75056049168005	3.90360530813161	4.12638505860508	3.54964700617872	3.97502219571693	3.98032301224257	4.12503496598102	0.147112423157952	0.766574466875538	0.908660493187862
Merged-chr19-56719795-2	chr19	56719695	56719895	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-2577.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	3.33526012752965	3.74889319816958	3.33569319558743	3.09091202198279	3.52311912602965	3.18951980674458	3.20225727458903	3.5487995151673	-0.0563907413315616	0.922020566225185	0.971073852305605
Merged-chr18-11353259-3	chr18	11353142	11353342	+	874.622192	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-280034.0	NM_001252495	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	4.0362348905568	4.3594961456922	3.80176328874503	4.07054547529544	3.38951463661032	3.63335911114328	3.50251416530572	3.57546060370803	-1.74760068324065	0.000479359077840188	0.00747105316435007
Merged-chr14-70932151-1	chr14	70932051	70932251	+	793.666687	f0_balb.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	42044.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	3.79759305567916	3.87446031205536	3.97503756734346	3.87491737548375	3.26395916000804	3.4636560676611	3.46353407864778	3.47428913081102	-1.56403952654378	0.00190176356737661	0.0224859848774584
Merged-chr3-148248830-4	chr3	148248744	148248944	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	705791.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	5.05006002218925	5.00726086657791	5.68520111572317	5.77902068492343	5.02182237079804	4.77177695419884	5.44555087461385	4.89613064490026	-0.691189131302743	0.0635172601876048	0.267552080890846
Merged-chr7-145025571-4	chr7	145025458	145025658	+	884.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	-85633.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	3.73392950187796	4.02800151717464	3.67569402443512	3.84694530184288	4.16158529120208	3.79490801160982	3.92950175814848	4.32058779148382	0.650410939994172	0.150947789760719	0.433957209173573
Merged-chr11-120632726-4	chr11	120632681	120632881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010756, intron 1 of 2)	CpG	766.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	6.21777028884737	6.76400563868575	6.25744608323876	5.78142416802747	6.11291204925685	6.43338960144448	6.26254832470436	6.21441269702882	-0.0574400469532384	0.84017868972127	0.939236696753208
Merged-chr15-77832211-4	chr15	77832103	77832303	+	815.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	9972.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	4.5609775978653	4.45803432425776	4.56173488273415	3.88417838601935	4.56658733055299	4.61611686698794	4.29487515601242	4.00623989465033	0.0265772824903435	0.952480081783672	0.983110341498473
Merged-chr19-53399296-3	chr19	53399201	53399401	+	871.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8667.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	3.32662195265706	2.99779485659877	3.09270237513188	3.07856386020593	3.24468322935469	3.2034601654096	3.36526825989006	3.37757075034908	0.658900419131357	0.224800497961615	0.533254215616452
Merged-chr11-83533425-4	chr11	83533324	83533524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2906.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	6.12900564925413	6.10543768287994	5.29223264356296	5.67036331455248	6.01384607957415	5.86657126869205	5.49373528890404	5.96775237381918	0.0244852486825081	0.936746893225	0.977098357477254
Merged-chr16-14365707-4	chr16	14365615	14365815	+	930.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008576, intron 1 of 30)	intron (NM_008576, intron 1 of 30)	4157.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	4.22539320956118	4.52893938381396	3.81906341520603	4.15198895475266	4.20602329016693	3.99968538689697	4.36885586840186	3.93099674092804	-0.165419240059399	0.711397736146517	0.884405406929924
Merged-chr4-139337226-3	chr4	139337115	139337315	+	719.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15361.0	NM_001290810	69902.0	Mm.27871	NM_023536	ENSMUSG00000028741	Mrto4	2610012O22Rik|Mg684|Mrt4	mRNA turnover 4, ribosome maturation factor	protein-coding	2.87177634483198	2.52627732121215	2.50675488079236	2.39804955928891	3.23313974844409	2.98486962909772	3.09292202172174	3.15747852964394	2.66815106237347	8.84967314428204e-05	0.00183273460790472
Merged-chr10-111161497-3	chr10	111161415	111161615	+	764.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-3287.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	3.32489258400887	3.85384647103102	3.44083680078261	3.72555037503208	3.53989762898834	3.16863733836709	3.31358740092521	3.12929936353011	-1.03390212620285	0.0737079529219768	0.292404800462024
Merged-chr7-98671636-4	chr7	98671518	98671718	+	704.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15049.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	3.88060132834604	3.68207512021029	4.1755443082386	3.72233951739469	3.61423961155253	3.85033369845382	3.54697520843168	3.67393465262882	-0.592654196007603	0.219978637611413	0.527609241046694
Merged-chr19-44146431-4	chr19	44146337	44146537	+	971.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028607)	promoter-TSS (NM_028607)	9.0	NM_028607	73689.0	Mm.124685	NM_028607	ENSMUSG00000057506	Bloc1s2	2410089B13Rik|BLOS2|Bloc1s2a	biogenesis of lysosomal organelles complex-1, subunit 2	protein-coding	5.65349223547216	5.81702828124942	5.37685239694289	5.25984762219095	5.54710795217115	5.9232135557145	5.15095020785131	5.67512996670239	0.106102192968538	0.736869813245886	0.896086114515881
Merged-chr5-121477874-3	chr5	121477778	121477978	+	782.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161626, intron 4 of 9)	intron (NM_001161626, intron 4 of 9)	14697.0	NM_001161627	77462.0	Mm.358781	NM_029912	ENSMUSG00000029452	Tmem116	4930406A18Rik|4930513P12Rik|C030022K24Rik	transmembrane protein 116	protein-coding	3.73053178669359	3.7955381907715	3.16695836359186	3.62166706894944	4.15851336049145	3.68524437131315	3.71556014820966	3.67684126913628	0.686787478182474	0.202278739726848	0.504732469151556
Merged-chr3-19300343-3	chr3	19300275	19300475	+	756.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122759, intron 1 of 12)	(TG)n|Simple_repeat|Simple_repeat	10947.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	3.850320783582	3.4236582127629	3.37252776164886	3.57745144824183	3.40640916827439	3.55157381367788	3.53828253789453	4.01404954373861	0.243492423917116	0.643588503380504	0.84979661420819
Merged-chr16-77083124-3	chr16	77083017	77083217	+	773.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 16 of 23)	RLTR11A2|LTR|ERVK	69048.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	3.83392010451861	3.63853478889339	3.45344189104623	3.58820493254046	3.76655889445386	3.69104980702545	3.72110531104557	3.92287401944535	0.444504790112312	0.34051488454266	0.649659830783264
Merged-chr9-13774900-4	chr9	13774803	13775003	+	952.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_024025, intron 1 of 15)	RodERV21-int|LTR|ERV1	25722.0	NM_023858	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	4.24755707816759	4.23466581257717	4.33813578440408	4.3680395788552	4.47114198404122	4.17208205295413	4.1342105735338	4.70788551794601	0.224698457413603	0.574030093105562	0.812045631551808
Merged-chr10-95530924-4	chr10	95530800	95531000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	MTD|LTR|ERVL-MaLR	15738.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	6.49589549024699	6.48378646443244	6.44625322052635	6.53878173783409	6.42938470005031	6.65609917087179	6.57439086155328	6.27584678053033	-0.0110739043993467	0.958823802228204	0.985304758738794
Merged-chr15-40047998-4	chr15	40047925	40048125	+	892.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155348, intron 1 of 2)	intron (NR_155348, intron 1 of 2)	2837.0	NR_155348	102636079.0	Mm.421381	NR_155348	ENSMUSG00000115142	Gm33251	-	predicted gene, 33251	ncRNA	4.45800232695895	4.31476650044436	4.7395884927495	5.02490442896492	4.38351009712626	4.44673013294637	4.60502436732438	4.93543940294711	-0.156691113612259	0.701518054964411	0.879767652498371
Merged-chr5-98018330-4	chr5	98018220	98018420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133738, intron 3 of 16)	intron (NM_133738, intron 3 of 16)	12642.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	7.40438226481333	7.39713399512816	7.3656601072217	7.75463454258122	7.29143674593023	7.39218691963229	7.25610478134977	7.53996705864576	-0.17638199583907	0.363439465738735	0.668574361907056
Merged-chr13-45965232-5	chr13	45965142	45965342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009124)	promoter-TSS (NM_009124)	-251.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	6.67250324732515	6.91411115804221	6.51415506807288	6.33324861172933	6.56570975344374	6.92212827653607	6.57851031774561	6.638614722266	0.0896073972310509	0.702224502692904	0.880055600344711
Merged-chr19-8837484-4	chr19	8837366	8837566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136064)	promoter-TSS (NM_001136064)	-1.0	NM_001136064	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	5.81743525441029	5.81872120237792	5.67009792584748	5.63150213908197	5.88837948960264	5.64980343150815	5.89971082480518	5.76682607307405	0.134197847265945	0.595767714975078	0.824150570800077
Merged-chr17-56763572-4	chr17	56763477	56763677	+	981.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1174.0	NM_001360405	224907.0	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	5.03915739024996	5.22790933614529	5.32559005814624	4.85429001398682	5.27753813564919	5.41036249566781	5.32678491450088	5.00058557141659	0.286972977918183	0.363093765555522	0.66825213027735
Merged-chr9-48618862-2	chr9	48618762	48618962	+	783.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13739.0	NM_001311062	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	2.70857283846311	2.7579937139773	2.70883913994704	2.5984881735443	3.05118634664688	3.31032724490292	2.96275411339688	3.08763540021474	1.87572711290404	0.00201146117138037	0.0234903682883811
Merged-chr14-14800074-4	chr14	14799966	14800166	+	955.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360516)	TTS (NM_001360516)	-20749.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	4.82918505111419	4.08699898704873	4.68948616178675	4.68680974279273	4.58747227435428	4.66382888666776	4.87047087070821	4.29956175585623	0.0393715155634912	0.922497299095193	0.971298693028147
Merged-chr5-33270786-4	chr5	33270690	33270890	+	953.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198860, intron 1 of 9)	intron (NM_001198860, intron 1 of 9)	4214.0	NM_001310535	13016.0	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	4.31045772858159	4.04945869089308	3.82424858322777	4.44577665803107	4.7294637725513	4.2429762071529	4.67558980904175	4.62706245149876	0.899569823169713	0.0371675248694292	0.192319515315579
Merged-chr6-137754591-4	chr6	137754506	137754706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172733)	promoter-TSS (NM_172733)	29.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	6.06498221120743	6.3366611748378	6.75727519506478	6.21420547895149	5.92794627774709	6.24318214529943	6.19854890771992	6.12586327397328	-0.365308238859553	0.156052804021112	0.441956095070971
Merged-chr19-4123255-4	chr19	4123157	4123357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016666, intron 1 of 6)	L1MB2|LINE|L1	-1682.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	6.34190608402326	6.65093259697842	6.51804678516094	6.41224497988721	6.59583668630932	6.44243566176059	6.31085226261154	6.73667578653906	0.074654856552103	0.7374876667348	0.896392006995728
Merged-chr19-41932751-4	chr19	41932646	41932846	+	957.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023740)	promoter-TSS (NM_023740)	568.0	NM_001164561	66583.0	Mm.289086	NM_025644	ENSMUSG00000034321	Exosc1	2610035C18Rik|2610104C07Rik|2610312F07Rik|AI447561	exosome component 1	protein-coding	4.60473533902603	4.96021632890224	4.52497662004135	3.54087936921398	4.72988348983116	4.65923703780704	4.50362168976401	4.52199143382201	0.205993400027203	0.674535300754021	0.866154895794861
Merged-chr8-126542280-3	chr8	126542224	126542424	+	955.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51112.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	3.92417145614396	3.43113424810412	3.92476185185234	4.11692275429365	3.68493199011831	3.72338709999333	3.75957758903381	4.0978967795613	-0.160525186821114	0.748516165699695	0.900999421474581
Merged-chr17-65766086-4	chr17	65765988	65766188	+	951.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	MTD|LTR|ERVL-MaLR	6664.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	4.84395718267405	4.80451372018654	4.71639847602222	4.4073667710647	5.72406495079275	5.31241278387825	5.42437217068149	5.59236110752591	1.61152936860704	3.23286863244004e-07	1.24452329036479e-05
Merged-chr7-73594222-2	chr7	73594122	73594322	+	850.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35827.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	3.03736428417452	2.76933179400549	2.87146076926113	2.67496629046643	2.5742631422509	2.640840168226	2.67206895474281	2.92770989920785	-0.6268923236742	0.346056211438959	0.654364893116659
Merged-chr10-58255437-4	chr10	58255329	58255529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027375)	promoter-TSS (NM_027375)	-97.0	NM_027375	70297.0	Mm.25531	NM_027375	ENSMUSG00000038039	Gcc2	0610043A03Rik|2210420P05Rik|2600014C01Rik|AW112121|mKIAA0336	GRIP and coiled-coil domain containing 2	protein-coding	8.19243348841123	8.30474616788678	7.9743654644452	8.53317241555294	8.44577065041984	8.31536850927696	8.57893792540053	8.16374402643426	0.140013036858473	0.455606036574893	0.739054394131757
Merged-chr13-67755156-4	chr13	67755039	67755239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001130)	promoter-TSS (NM_001001130)	-5.0	NM_001001130	22746.0	Mm.288396	NM_001001130	ENSMUSG00000058331	Zfp85	KRAB19|Rslcan2|Zfp71|Zfp85-rs1	zinc finger protein 85	protein-coding	6.24776858663329	6.28052440696988	6.74852668131238	6.4640363524571	6.25914833328588	6.06550851366358	6.36527369876967	6.74371701672307	-0.100647020993173	0.693067666710977	0.875211530726656
Merged-chr15-95827674-3	chr15	95827578	95827778	+	861.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155276, intron 1 of 1)	MLT1B|LTR|ERVL-MaLR	2394.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	3.80798975020238	3.78334069498197	3.53706925861243	3.57741632113993	3.86002543110443	3.87816036815039	3.52439909629668	3.90046772468998	0.372571873939846	0.427767378971398	0.71887209364609
Merged-chr6-117271765-4	chr6	117271627	117271827	+	912.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103192.0	NM_021704	20315.0	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	4.31213240618867	4.13568328812516	4.76472781310667	4.70556396584146	4.18118390599533	3.95068732385302	4.24805290730691	4.62831870889812	-0.553945719931798	0.207809806878507	0.511929613200153
Merged-chr7-101837899-4	chr7	101837772	101837972	+	987.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122739)	promoter-TSS (NM_001122739)	-48.0	NM_001122739	16332.0	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	5.57961680753993	5.88877429279857	5.5276854967203	5.71557797234628	5.61204826550099	5.22207885065698	5.09254429690848	5.35055572912197	-0.589671581946377	0.0464137074002455	0.221392263893912
Merged-chr10-60273579-4	chr10	60273480	60273680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4048.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	6.29845056289334	6.33386557690817	6.51022740257996	6.34833039376169	6.53926299952797	6.49464700939042	6.52433038519187	6.38702925639134	0.174700522700929	0.408784671614103	0.70458903548104
Merged-chr17-13761455-4	chr17	13761329	13761529	+	912.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022311)	promoter-TSS (NM_022311)	-35.0	NM_022311	21646.0	Mm.486358	NM_022311	ENSMUSG00000038347	Tcte2	AI429268|Tcte-2	t-complex-associated testis expressed 2	protein-coding	3.84652820191997	3.98333629549673	4.00908506052085	3.88373636102366	4.24504048214756	4.41070864906289	4.13485889685498	4.35958553454633	0.927849289129207	0.0211714177054538	0.132912360280164
Merged-chr2-133430783-4	chr2	133430689	133430889	+	833.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121370.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	4.30516955524778	3.87305403776401	4.42636805703038	4.45226726698363	4.14739252162547	3.91786505670404	4.15451649779745	4.42344528771521	-0.286535839931588	0.511701517969705	0.775628687274991
Merged-chr18-39140732-4	chr18	39140634	39140834	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 10 of 21)	intron (NM_001361073, intron 10 of 21)	147589.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	5.13498176177118	4.93226022504978	4.96488870865082	5.51456850543606	4.83013952901463	5.21039625973223	5.14198313417584	5.09996185975437	-0.209227743956001	0.538083904428448	0.791344330116582
Merged-chr10-82795508-4	chr10	82795406	82795606	+	945.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16617.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	5.3992952163346	5.09403709128317	5.9734108147761	5.65140414467675	4.74776161614289	4.94685130427172	5.22577481954356	5.18390848731671	-0.976796651082526	0.00474813054304071	0.0457640059476093
Merged-chr12-24697263-3	chr12	24697151	24697351	+	804.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-11003.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	3.9239754719003	4.04160151827829	3.65526339010549	4.14956797112678	3.89284122388523	3.99583228534321	4.04442729357863	3.52860432342131	-0.237948574177506	0.618573280436559	0.836022749315106
Merged-chr14-98873597-3	chr14	98873533	98873733	+	846.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	172503.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	4.75766330776653	4.35836232739305	4.2088289184231	4.78516055071995	3.92212523404817	3.76953397186754	3.99439403424662	3.7770290208716	-1.78104555221158	8.59083699248857e-05	0.00178902043969674
Merged-chr8-22935793-4	chr8	22935675	22935875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081149, exon 17 of 18)	exon (NM_001081149, exon 17 of 18)	-39061.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	6.60466975461398	6.4959928605039	6.65116414064396	6.95218483939904	6.25200996184768	6.21145838846084	6.71652994227887	6.32732523558644	-0.451115931490134	0.0608085154083564	0.260614722919762
Merged-chr1-170998419-4	chr1	170998304	170998504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20522.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	8.20024982200107	8.01717007700918	8.26004844983587	8.51367707918973	8.26418941151234	8.11350332015049	8.3812979705958	8.16591863902164	-0.0402408383496276	0.821043580318007	0.931480092500087
Merged-chr12-69458549-4	chr12	69458456	69458656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16994.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	5.06275322242321	5.32745607038285	5.22537164328421	4.9626299344531	5.29401353588142	5.13212700830918	5.10577205695684	5.15957670384469	0.0756179163527292	0.804206233466023	0.924609844805008
Merged-chr9-36768646-4	chr9	36768528	36768728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1050.0	NM_008408	16430.0	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	5.39384751897987	5.38878245180774	5.20851970957939	5.28010901099215	5.70017345440677	5.17095755225788	5.47757607639662	5.50141952734388	0.302599562261755	0.295085212875367	0.607136012928335
Merged-chr7-111478299-1	chr7	111478199	111478399	+	623.5	f0_balb.idr	intron (NM_001360903, intron 10 of 10)	intron (NM_001360903, intron 10 of 10)	301678.0	NM_001360903	233733.0	Mm.323322	NM_173739	ENSMUSG00000038296	Galnt18	2900011G21Rik|BC024988|Galntl4|galNAc-T18|mpp-GalNAc-T18(O18)	polypeptide N-acetylgalactosaminyltransferase 18	protein-coding	3.44450843683363	3.63187547838996	3.546079002315	2.94401157507351	2.94058505803049	3.12658558373161	3.32198852557726	3.38936898490519	-0.765033886801986	0.213645342845963	0.519130037171409
Merged-chr6-43666219-4	chr6	43666106	43666306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311111)	promoter-TSS (NM_001311111)	72.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	8.6556686250182	8.71025981029087	8.96203788477434	9.02826280522265	8.79829219366803	8.89697104758964	8.94667238106604	8.71358953519635	-0.0153594791694237	0.924433025114379	0.972024378742818
Merged-chr16-32396402-4	chr16	32396299	32396499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4107.0	NM_001160402	277203.0	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	6.57714087048763	6.51878862812619	6.28504554847384	6.41565022300849	6.50037532399472	6.59001307050808	6.30959893025689	6.3558997270391	-0.0106361832990747	0.961062048043814	0.98607960708679
Merged-chr13-45512680-4	chr13	45512561	45512761	+	813.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025508, intron 1 of 8)	intron (NM_025508, intron 1 of 8)	5217.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	4.18903126484977	4.60300326678016	4.67209284822334	4.66221152222353	3.89908008554483	3.85210865096901	4.43274906810444	4.23497449275504	-1.03854327493465	0.0170026911737415	0.114608794738509
Merged-chr15-58889453-4	chr15	58889391	58889591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175151)	TTS (NM_175151)	262.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	5.08114288101676	5.35837759671381	5.43882684217117	5.37313231039599	5.22850274134327	5.55584661017447	5.49314075063071	5.86215381161503	0.387971545114213	0.198584434769668	0.500125640950295
Merged-chr10-99459460-2	chr10	99459360	99459560	+	808.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149711.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	3.28392448162258	3.62832798857958	3.44764042544659	3.35419874419481	3.27856663234214	3.13838555602252	2.94942908124406	3.33930863677769	-0.907067915017958	0.11284058736055	0.371420623567672
Merged-chr3-51373191-3	chr3	51373109	51373309	+	794.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	23338.0	NR_028121	67749.0	Mm.273339	NM_026358	ENSMUSG00000037161	Mgarp	4930583H14Rik|AI195347|CESP-1|HUMMR|Osap|Qsap	mitochondria localized glutamic acid rich protein	protein-coding	3.29406095111819	3.1775121057224	3.34849152222076	3.22492666030918	3.37676581455849	3.16128197730289	3.16806246644983	3.17762396325057	-0.104455805469122	0.846622479113779	0.941967608044389
Merged-chr16-21570379-3	chr16	21570257	21570457	+	879.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 41 of 46)	intron (NM_001081366, intron 41 of 46)	124308.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	3.37435967965899	3.04256020941409	3.26252322894676	3.41391092232949	2.97734605638015	3.25152979025308	3.25025469164858	3.61613740511135	0.0220777729300632	0.969867047638962	0.989113198611538
Merged-chr7-16056710-4	chr7	16056674	16056874	+	931.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-15071.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	3.98458523850183	3.82726717720131	3.93486565271354	3.78493889943517	3.80948378012105	4.058681933222	4.06205700907719	4.50117083124006	0.664853636804897	0.137958862660844	0.413168421985787
Merged-chr11-116625680-4	chr11	116625582	116625782	+	857.154785	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	1337.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	3.15142621797066	3.50455292500122	3.15183937662538	2.88315047482067	3.02431267039294	3.2031519823485	2.95245027949073	3.15016840323803	-0.407190937540934	0.501199131270583	0.769119803481994
Merged-chr11-94496748-4	chr11	94496665	94496865	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361558, intron 1 of 8)	intron (NM_001361558, intron 1 of 8)	3209.0	NM_001361558	71889.0	Mm.248620	NM_027984	ENSMUSG00000010080	Epn3	2310022G12Rik	epsin 3	protein-coding	3.73747939025634	4.14126419890384	3.89295096005823	4.20735250833553	3.81240144561949	3.47523038294036	3.96913785557863	3.62160182160764	-0.804261179530102	0.10132984051116	0.349327869353383
Merged-chr2-45106629-6	chr2	45106565	45106765	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	3612.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	3.60354125365641	4.30720998254015	3.54374025508053	3.38704580945144	3.63044751113914	3.89227783203364	4.03030678175735	3.60208408959608	0.101224881041586	0.852924503492112	0.944672349828292
Merged-chr10-78069746-4	chr10	78069646	78069846	+	958.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015790, intron 1 of 6)	CpG	378.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	4.51306030187044	4.54845497543265	4.75649984227912	4.77299943210968	4.84521394022789	4.45247296015245	4.9962859909823	4.78961916929526	0.270981344237099	0.445808940274529	0.73169697841267
Merged-chr7-7121498-4	chr7	7121393	7121593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172738)	promoter-TSS (NM_172738)	-17.0	NM_172738	232853.0	Mm.23838	NM_172738	ENSMUSG00000062116	Zfp954	5730403M16Rik|8030437F07|AA123315	zinc finger protein 954	protein-coding	7.61340893066184	7.485881800621	7.5701150487843	8.10105581895591	7.67558094906368	7.3700504880556	7.80066538547777	7.98477985623748	-0.000966731364620918	0.996516924245943	0.998649284589029
Merged-chr11-4660030-4	chr11	4659942	4660142	+	870.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029291, intron 8 of 19)	intron (NM_029291, intron 8 of 19)	22249.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	4.09309115854327	4.0569427371382	4.04425442087264	4.46894029866114	4.01932646872123	4.26654423266132	3.92389618489407	4.42943781529316	-0.0627356944138951	0.88665262081523	0.957446551626423
Merged-chr18-78808088-4	chr18	78807997	78808197	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053099, intron 4 of 5)	MIRb|SINE|MIR	-211147.0	NM_207651	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	4.53371910363796	4.55186395326637	4.4919233431796	4.65263450052151	4.71913550314005	4.38444623550121	5.01788696081536	4.39978375455207	0.2109308471312	0.575630671849452	0.813162434587734
Merged-chr3-109273276-4	chr3	109273196	109273396	+	766.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67387.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.05827118813199	3.80857626912912	3.64782037139599	3.75118637084638	4.07522528866664	4.18320446015885	3.63455214645857	4.01164437347866	0.479161436355967	0.297673886755027	0.609906784270108
Merged-chr15-97487623-4	chr15	97487534	97487734	+	796.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	218188.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	3.54694619908163	3.94695808174959	3.42759122364522	3.82615456828026	3.66303366661803	3.54167613517193	3.64258355744943	3.70658391271873	-0.223260428164744	0.652674615619676	0.854764223296605
Merged-chr10-84646820-4	chr10	84646725	84646925	+	872.142822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027423, exon 10 of 28)	exon (NM_027423, exon 10 of 28)	24388.0	NM_027423	70428.0	Mm.335007	NM_027423	ENSMUSG00000034453	Polr3b	2700078H01Rik|A330032P03Rik|C85372|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding	3.45077244139891	3.32644814494333	3.33389268015149	3.13663156892074	3.49694243162717	3.56756444669008	3.64196595109229	3.65592888516907	0.980403618486771	0.0503910160426633	0.232913019069126
Merged-chr15-6707682-4	chr15	6707580	6707780	+	821.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030168)	promoter-TSS (NM_030168)	-701.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	4.66718939372213	4.32321660247745	4.80410643938847	4.58323426022095	4.32114106339667	4.42280039747816	4.41132441934137	4.38443975755998	-0.500644044740884	0.180833667953989	0.477219325645001
Merged-chr3-138143820-4	chr3	138143719	138143919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163457)	promoter-TSS (NM_001163457)	20.0	NM_001348197	108943.0	Mm.471692	NM_175389	ENSMUSG00000004127	Trmt10a	3110023L08Rik|AA794508|Rg9mtd2|Rnmtd2	tRNA methyltransferase 10A	protein-coding	8.64923497384134	8.57889876532496	8.36241577200994	8.38581346945985	8.69469309897198	8.74696666171971	8.41328899266003	8.39476248430364	0.0967468852465908	0.568252509454933	0.808586868024762
Merged-chr5-137837299-4	chr5	137837182	137837382	+	817.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1004.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	3.88823322407546	3.69122199970853	4.06397433503788	3.82245103949543	3.71060687657709	3.56011168799658	3.67113179145245	3.83864281187641	-0.49909382767833	0.284117706456214	0.596080237800185
Merged-chr15-36649935-4	chr15	36649839	36650039	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40966.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	4.91481541171476	4.92823901257072	4.72922495040917	4.77194654387664	5.09213583690594	4.69108818385503	4.85715251379424	4.97977102984319	0.180376551843557	0.583518694261115	0.817185636068388
Merged-chr11-29647954-4	chr11	29647840	29648040	+	962.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44958.0	NM_194053	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	4.70809912309537	4.46993307482545	4.74856161756506	4.80556826885097	5.18375025174419	4.99754694470355	4.97198580781185	4.78392134402767	0.611982228987782	0.0696940577935115	0.282470865487095
Merged-chr17-83727857-4	chr17	83727758	83727958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 3 of 16)	intron (NM_054082, intron 3 of 16)	21695.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	6.37899681943034	6.13934119648748	5.94553499285002	6.19041552376057	6.33272142538186	5.83643527919288	6.06953667278354	6.32448289121325	-0.0106939470344928	0.965955090690597	0.988022131369328
Merged-chr10-128493054-4	chr10	128492996	128493196	+	989.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317220)	promoter-TSS (NM_001317220)	-87.0	NM_001317219	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	4.92800778106339	5.15463238653252	4.96939001151335	5.08379712092701	5.44407312580593	5.71548263937079	5.80754420048934	5.72818268963657	1.11108392960386	0.000123775667302458	0.00242505593804614
Merged-chr9-121574611-4	chr9	121574517	121574717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-12403.0	NR_040740	75384.0	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	5.52426171501539	5.4364825478376	5.9432639222077	5.68869821891704	5.49712086281588	5.58603756576442	5.55104264028379	5.21126751804983	-0.32832198032972	0.251521621067011	0.56287087730158
Merged-chr10-40057773-4	chr10	40057627	40057827	+	819.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-32459.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	3.44546033375654	3.10940129965833	3.65124242481741	3.41111503957332	3.5455021015315	3.38025941408098	3.68105723033781	3.32786623392997	0.262590542159173	0.623512454165244	0.838991889580473
Merged-chr3-146607377-4	chr3	146607271	146607471	+	911.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009474, intron 1 of 7)	intron (NM_009474, intron 1 of 7)	8227.0	NM_019957	56629.0	Mm.25853	NM_019957	ENSMUSG00000028185	Dnase2b	AI526873|Dlad|DnaseIIb	deoxyribonuclease II beta	protein-coding	4.68543783119141	4.47444813925483	4.61559122640785	3.98398989262624	4.44766011788449	4.55026425675686	4.39913332703476	4.02455341967097	-0.19495751068629	0.652201339112175	0.85444845698893
Merged-chr10-111831338-3	chr10	111831249	111831449	+	876.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	43027.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	3.54324489180919	3.55501120521287	3.83852747140237	3.83708255505632	3.33387858247162	3.41480183680387	3.683956109387	3.42648343513154	-0.782343167646229	0.124570301115194	0.391884975827738
Merged-chr15-27883058-4	chr15	27882966	27883166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 9 of 56)	intron (NM_001081302, intron 9 of 56)	142782.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	6.72672054704016	6.66523011739344	6.69808524581593	6.8490454519278	6.8092664179108	6.69739999201712	6.8584076903889	6.83574036546647	0.0819189386016307	0.677887830227399	0.867919959800118
Merged-chr13-100201904-4	chr13	100201830	100202030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 1 of 15)	intron (NM_001126182, intron 1 of 15)	192.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	4.89496036597502	5.31830450813985	5.3424563187208	4.40119033622472	4.78034446127333	5.31235455837213	5.2325327863676	5.07030121772566	0.142570411214372	0.714186272036236	0.885697313573214
Merged-chr16-20620006-4	chr16	20619906	20620106	+	911.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028420, exon 2 of 2)	3' UTR (NM_028420, exon 2 of 2)	1272.0	NM_028420	73047.0	Mm.425977	NM_028420	ENSMUSG00000051146	Camk2n2	2900075A18Rik	calcium/calmodulin-dependent protein kinase II inhibitor 2	protein-coding	4.39274405450016	4.68873666173381	4.43602686050496	4.25218855565031	4.44180113012973	4.43184220897344	4.41586797044483	4.34667221796975	-0.0746630688678762	0.843936390248239	0.94088019607581
Merged-chr9-111074134-4	chr9	111074024	111074224	+	957.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-16606.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	3.90059944541696	4.58238785939035	4.07474373981336	4.49600025127298	4.57108620385466	4.49540296481781	4.65110623700745	4.27349844414343	0.455403420943882	0.287908028634159	0.599886086244852
Merged-chr4-8927713-4	chr4	8927619	8927819	+	922.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	176395.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	4.16309789006953	3.75625185966101	4.11375315295878	4.14623624744214	4.44147299563146	4.29132915639097	4.68969282004642	4.61095359570585	1.09401545278038	0.00728787760617026	0.0626956538711134
Merged-chr7-81828952-1	chr7	81828852	81829052	+	841.0	f0_balb.idr	intron (NM_146193, intron 1 of 7)	CpG	479.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	4.43443295042946	4.45731949331219	4.20649959069811	4.41996225413222	4.35573290936586	4.56479717607365	4.3292507218023	4.6258722969194	0.189664908496181	0.61198338813953	0.832680684364583
Merged-chr2-129604299-4	chr2	129604193	129604393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	8831.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	5.40283297133987	5.66351006240836	5.27992913420795	5.38127041206277	5.56641583596635	5.57860250216219	5.25404322071849	5.66488707518563	0.150482343923194	0.596601189904201	0.824844630192318
Merged-chr7-35098970-4	chr7	35098885	35099085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20308.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	6.83483549887114	6.3100279951227	6.97056658006376	7.09775751392299	5.73549666390305	6.43453823353846	6.16075160344514	6.76490145547772	-0.751798534060386	0.0118351563873631	0.0889953691937573
Merged-chr13-60897522-4	chr13	60897409	60897609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145801)	promoter-TSS (NM_001145801)	-62.0	NM_001145801	13025.0	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	7.64504670265642	7.67237011946949	7.7457280757171	7.84915399410066	7.71028500986965	7.6970064112629	7.93265019727114	7.81010876192418	0.0685978499762174	0.684429274118077	0.870747319611953
Merged-chr1-82816191-4	chr1	82816076	82816276	+	932.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23284.0	NM_010472	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	4.25781044037484	3.63885101211001	3.88065734656925	4.36286810795054	4.22269112440565	4.00265524765523	3.91845034043919	4.2958841485303	0.108704116485734	0.81940504428342	0.930843810041761
Merged-chr2-35680514-3	chr2	35680421	35680621	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290637, intron 3 of 16)	intron (NM_001290637, intron 3 of 16)	-11473.0	NM_001001602	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	5.27263153244755	5.53117378644506	4.91855003969655	5.56872685543689	4.4635057097371	4.61813710645831	5.21853398209924	4.5297723770851	-1.19787790760889	0.00166616922832581	0.0202763309117803
Merged-chr12-40040302-4	chr12	40040206	40040406	+	979.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2319.0	NM_001039515	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	5.00351549499077	4.80935581790723	4.9368326533786	4.81530260437537	5.09698737198708	5.00227550605478	4.91307089085373	4.70673723511703	0.119138321283712	0.713726153638333	0.885468561919243
Merged-chr7-141294039-3	chr7	141293946	141294146	+	800.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007878, exon 3 of 4)	exon (NM_007878, exon 3 of 4)	2040.0	NM_007878	13491.0	Mm.41075	NM_007878	ENSMUSG00000025496	Drd4	AW125663|D4R|Drd-4	dopamine receptor D4	protein-coding	3.76470717608778	3.78953841234376	3.5451863632078	3.80489986878222	3.76728024917662	3.59921281172089	4.01839358996722	3.65788114303402	0.108100284977031	0.818403181453047	0.930382675088584
Merged-chr9-116079346-4	chr9	116079256	116079456	+	843.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96007.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.02126377493236	4.64506664181793	4.82845300124201	4.81010195283532	4.52271708512071	4.55205446355301	4.40151585286939	4.89306596326929	-0.481981515178817	0.179402690761218	0.475647339579571
Merged-chr14-32781665-4	chr14	32781550	32781750	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4313.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	4.4972832307898	4.19473438488113	3.8904781757567	4.19657629028565	4.3550335196522	4.3797188807619	4.51284800874376	4.10677357301073	0.330388790785458	0.422894306245531	0.714938134013999
Merged-chr7-67445564-4	chr7	67445443	67445643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72685.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	7.43866012957071	7.1419512194918	7.42122913089481	7.47255333197686	7.25291941624543	7.00876984543299	7.20276002410684	7.1895335358344	-0.279446218247639	0.138225002559834	0.413600027627647
Merged-chr14-59201982-4	chr14	59201878	59202078	+	797.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027764, intron 1 of 11)	intron (NM_027764, intron 1 of 11)	750.0	NM_001360610	71330.0	Mm.234195	NM_027764	ENSMUSG00000035469	Rcbtb1	5430409I18Rik|AW111883|CLLD7|CLLL7	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding	4.3357630318104	4.18905631428074	4.06573057302125	4.45497644890902	4.13845870828486	4.33414534767654	3.89086004598678	4.15996138581466	-0.359500705310136	0.389495449045667	0.689760676686943
Merged-chr2-25263221-3	chr2	25263135	25263335	+	848.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175286, exon 1 of 4)	exon (NM_175286, exon 1 of 4)	637.0	NM_175286	97031.0	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	3.49397456819032	3.72431295281572	3.75568775133404	3.39689844426829	3.66836975940847	3.61033964539831	3.36187245331084	3.70532315912207	0.00920211120543846	0.98536400642164	0.994679311230532
Merged-chr7-110250896-4	chr7	110250807	110251007	+	889.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 2 of 11)	L1MB8|LINE|L1	29204.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	4.47403353929414	4.01579629388056	4.13566734832923	4.40468298535675	4.10782842212822	4.26133569479033	3.96554818119381	4.47178754102509	-0.159851205774485	0.706113939520925	0.881879743016467
Merged-chr16-32010547-3	chr16	32010461	32010661	+	715.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7274.0	NM_177103	320213.0	Mm.152890	NM_023801	ENSMUSG00000022772	Senp5	6230429P13Rik|A730063F07Rik|AI851888|BB189556|SMT3IP3	SUMO/sentrin specific peptidase 5	protein-coding	3.66115957584393	3.68040244460945	3.44561303794509	3.18392149702208	3.36136984175062	3.56230500830281	3.48929012672977	3.80031756749725	0.198372420388772	0.70878771674266	0.88307290901394
Merged-chr4-137047783-3	chr4	137047675	137047875	+	765.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198248, intron 1 of 18)	intron (NM_198248, intron 1 of 18)	920.0	NM_198248	230848.0	Mm.31068	NM_198248	ENSMUSG00000060862	Zbtb40	BC059177|C230087D24|Gm571|mKIAA0478	zinc finger and BTB domain containing 40	protein-coding	3.88723458060243	4.66636171409185	3.83413607258696	3.24606771860222	4.07665613178558	4.21118669145598	3.70525700877331	3.7760793900295	-0.164561103934348	0.776837126171284	0.913015118902433
Merged-chr8-125699771-4	chr8	125699672	125699872	+	887.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41C|LTR|ERV1	29954.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	4.25377075005119	4.53079104964659	4.12328479319147	3.49699526295229	4.06054800020746	4.04937281366734	3.85452260541747	4.12069528288555	-0.327293469267722	0.513441044539219	0.77646733267772
Merged-chr15-25533241-3	chr15	25533098	25533298	+	942.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89352.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	3.27742240344032	3.41001820436228	3.68850048098346	3.42070755891558	3.35729779426733	3.11986177542746	3.43392293272621	3.27620737466124	-0.530523904618444	0.32592280845638	0.637471410835258
Merged-chr2-156311008-3	chr2	156310890	156311090	+	820.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020255)	TTS (NM_020255)	-1483.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	3.37000789909718	3.24189397017707	3.06459789195145	2.75920557835509	3.5759600026279	3.24518593541946	3.55556954046087	3.31285616996636	1.14880024389098	0.0527686888474359	0.239542251496916
Merged-chr12-91789955-4	chr12	91789855	91790055	+	946.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3519.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	4.74287977551052	4.53160024109154	4.56117207516957	4.42530463669287	4.63475562567624	4.27486885543982	4.23384312028187	4.59683440201171	-0.233033002781024	0.541478622680733	0.793272720948538
Merged-chr2-73509779-4	chr2	73509664	73509864	+	834.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	19723.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	4.30226215921977	4.08671087059941	4.73434131367101	4.94378136568148	4.39962037539438	4.17223134203131	4.37322749651251	4.3902522343579	-0.542728699778308	0.210241310073784	0.514695312458878
Merged-chr10-60348129-4	chr10	60348032	60348232	+	895.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	1281.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	4.48567955904572	3.88249013785938	4.52415301066718	4.27690801816663	4.33690299856733	4.26183344677249	4.38698821656153	4.32028413956625	0.0454164719883521	0.911803048330301	0.967044077557292
Merged-chr9-86478935-2	chr9	86478835	86479035	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177208, intron 1 of 38)	intron (NM_177208, intron 1 of 38)	11781.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	3.83133569549908	3.80050471083932	4.44949070557046	4.30010043209783	3.88434527920469	4.69030783510851	4.13491162818372	4.36875333607797	0.414117251229012	0.392155507063191	0.691774675781771
Merged-chr16-52082061-4	chr16	52081990	52082190	+	933.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	50541.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	4.66656470239102	4.19567011192747	4.58895712119773	4.77888477792441	4.81475586922509	4.54654635787666	4.68246516543064	4.6642568496195	0.213694694554509	0.567468323405059	0.808289197783732
Merged-chr7-141469146-2	chr7	141469046	141469246	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111050, intron 1 of 6)	intron (NM_001111050, intron 1 of 6)	357.0	NM_001111050	12476.0	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	2.79565791726998	2.84158449694684	3.11129947435018	2.89294405786779	3.06417361678832	3.10362873870379	3.15298699028314	3.05241328498333	0.748190643371077	0.196587311389304	0.49770187577376
Merged-chr14-8081434-3	chr14	8081342	8081542	+	802.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025938, intron 1 of 5)	RMER10A|LTR|ERVL	1129.0	NM_025938	67053.0	Mm.210048	NM_025938	ENSMUSG00000023156	Rpp14	2610511E03Rik|AA682089	ribonuclease P 14 subunit	protein-coding	3.22608163827985	3.21353060821197	3.1679007479185	3.41939275272119	3.36477873170394	3.21517749296368	3.0329969211541	3.16636218698121	-0.236718744363787	0.672335682981454	0.865119100634158
Merged-chr7-126378052-4	chr7	126377949	126378149	+	864.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023712)	promoter-TSS (NM_023712)	-115.0	NR_045537	73658.0	Mm.11112	NM_023712	ENSMUSG00000030741	Spns1	2210013K02Rik|Spin1|Spinl	spinster homolog 1	protein-coding	4.4170303702824	3.99513401343648	3.95946843586428	3.9049526949158	4.31616111972495	4.28915065331502	4.35810491242183	4.33548162584291	0.63487241756444	0.120410368538936	0.384129151229513
Merged-chr10-126928344-3	chr10	126928244	126928444	+	986.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-26973.0	NM_001358970	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	4.29723069748713	3.83709344347498	4.3358779909586	4.31593943180764	3.90292342134052	3.64847447969874	3.64870431089319	4.08612139808119	-1.01908588135967	0.0309299225892474	0.170782791093014
Merged-chr19-29430680-4	chr19	29430546	29430746	+	920.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 2 of 5)	intron (NM_021396, intron 2 of 5)	19727.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	4.46284679431907	4.199164070572	4.34716543375435	4.2793311951395	4.14787508096729	4.09486951260698	3.95597767995986	4.21624774202489	-0.533548906210165	0.18419998955604	0.481506733739574
Merged-chr1-39944532-3	chr1	39944435	39944635	+	820.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	43622.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	4.01373384661964	3.85413523655754	4.10499300642233	4.33115662711899	3.64092419003763	3.6892350573585	4.04252547556506	4.05796516298523	-0.635685113539031	0.173855105780721	0.468016813825723
Merged-chr9-108340546-4	chr9	108340448	108340648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001329528)	TTS (NM_001329528)	1468.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	7.06338589429355	7.31371451327595	7.51089981425245	7.47046241124014	7.30912426004422	7.25508497470825	7.64810790192808	7.32329263525058	0.0478537686398131	0.810922255146892	0.926854276252049
Merged-chr4-95084152-3	chr4	95084054	95084254	+	814.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-31932.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	4.25877756538142	4.49422824691534	4.54169778300402	4.63842396332763	3.91213997479566	4.02116758239945	4.14800174101979	4.2108943318952	-1.07047089329911	0.008495475040071	0.070093823794739
Merged-chr4-136125724-4	chr4	136125632	136125832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-18090.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	6.88257757070927	6.88327794522925	6.91083367806842	7.0501190435344	7.06035533986598	7.13972527720667	7.15034293514315	6.93244619955555	0.180346801454913	0.34251251162955	0.651536445694174
Merged-chr18-68300326-4	chr18	68300246	68300446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026440)	promoter-TSS (NM_026440)	-9.0	NM_026440	67897.0	Mm.27544	NM_026440	ENSMUSG00000009535	Rnmt	2610002P10Rik|AI848273|Rg7mt1|mKIAA0398	RNA (guanine-7-) methyltransferase	protein-coding	8.08503045198552	8.39690868671778	8.17062609696826	8.42564795919779	8.43675987534139	8.45064255826802	8.53479712036101	8.51309688945614	0.250251288095347	0.120359303099876	0.384035092134932
Merged-chr16-21204562-4	chr16	21204460	21204660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010143)	promoter-TSS (NM_010143)	-235.0	NM_010143	13845.0	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	7.8316130004793	8.06972431047154	7.95912606066118	7.97722403900364	8.21881624424329	8.21869191624893	8.22010371562873	7.96783138213149	0.253915683113729	0.11854274526435	0.380903881376893
Merged-chr17-28801679-4	chr17	28801585	28801785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081315, intron 1 of 12)	CpG	559.0	NM_001081315	268936.0	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	7.30996139599208	7.31840099416626	6.79625932080551	6.8854266314391	7.25172883292519	7.19521550087588	7.36179637211881	7.0628441309666	0.17784473959312	0.405315712358808	0.702237410904421
Merged-chr13-37526368-4	chr13	37526253	37526453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	181008.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	6.75953254197612	6.91852421839691	7.09117799701378	7.32583260956093	6.87110399571685	7.0103212776371	7.14506011524006	7.03870018081605	-0.0564036581763772	0.793198377089115	0.91989642620941
Merged-chr9-70260462-4	chr9	70260355	70260555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	53105.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	6.37747013999935	6.28396175259213	6.18080679857574	6.29908197645135	6.70117344142777	6.67676547956882	6.86133995429035	6.60724907465267	0.622840007125324	0.00290865996070125	0.0312220893069331
Merged-chr4-155219968-3	chr4	155219854	155220054	+	798.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	2581.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	3.29375542952261	3.49138194015613	3.55504025836531	3.45864671409256	3.12328479651878	3.14874580088506	3.28195636542316	3.17144947864774	-1.02578732889858	0.0589972699704977	0.255824982737557
Merged-chr19-5845465-6	chr19	5845371	5845571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003513)	promoter-TSS (NR_003513)	7.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	7.5905345861678	7.59935166903128	7.41650893850522	7.13672557898434	7.5396504732947	7.79439413313212	7.4655827159091	7.49744714486411	0.186254446347916	0.346865970769664	0.654983043837928
Merged-chr6-116142422-4	chr6	116142309	116142509	+	926.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 1 of 5)	Lx8|LINE|L1	50965.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	5.56095928764623	5.39511141184743	4.9103266457689	5.07349408696975	4.48511422729781	5.01177899921708	4.88666650037266	4.66352596014209	-0.959723810133791	0.00754500128114336	0.0644016843974701
Merged-chr15-83171341-4	chr15	83171223	83171423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 1 of 8)	intron (NM_029787, intron 1 of 8)	885.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	5.19632760944319	5.35704053952136	5.32532970313928	4.85165979306141	5.44967787283493	5.30657638069972	5.66378065874693	5.79769105548908	0.689253851908935	0.025802526277843	0.15167399970538
Merged-chr12-85526252-4	chr12	85526169	85526369	+	903.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	52379.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	4.84309496212926	4.50200650208898	4.39526943848521	4.53836275306782	4.32828734792834	4.56966093551925	4.33064279282369	4.52030871127808	-0.319702982961351	0.392479732789414	0.691933206965634
Merged-chr10-84886549-3	chr10	84886455	84886655	+	849.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024918, intron 15 of 17)	intron (NM_001024918, intron 15 of 17)	-31058.0	NM_001013441	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	3.50447961791297	3.07526750561365	3.64074058069136	3.34896133633813	3.07051740201445	3.09157192081199	3.04130632818433	3.17842816486669	-1.18796718230719	0.0425077449949642	0.209373661407277
Merged-chr6-22398593-4	chr6	22398463	22398663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42482.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	6.11022961896924	5.74146080621519	6.17148443453049	6.42135770277033	6.16474247394687	6.08866359965121	6.37040706680603	5.93101494440676	0.00247555158426155	0.992592643849482	0.997258162727074
Merged-chr8-120114568-3	chr8	120114476	120114676	+	998.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	CpG	424.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	5.2523922730536	5.11715394786515	5.3672214565491	5.08438972501264	5.05144131138455	5.56505896235356	5.00105286755049	4.78855781782421	-0.137804199379505	0.679149826948538	0.868317902828816
Merged-chr12-5181789-3	chr12	5181689	5181889	+	850.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 3 of 13)	intron (NM_001164493, intron 3 of 13)	193893.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	3.34969657725428	3.06700016180915	3.46741053237523	3.42881721081567	3.51182900615199	3.79369841273415	3.70429689213203	3.46550636186868	0.924816930422316	0.0781417982786385	0.3024170867592
Merged-chr1-175692838-4	chr1	175692719	175692919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010098)	promoter-TSS (NM_010098)	-187.0	NM_010098	13603.0	Mm.32744	NM_010098	ENSMUSG00000026525	Opn3	ERO|Ecpn	opsin 3	protein-coding	9.45467928992551	9.51533990778239	9.45607305548603	9.35879214711115	9.59855151916088	9.7447726794313	9.80438289248099	9.32939351391728	0.227820453611737	0.144463907299823	0.423596146557945
Merged-chr6-13073182-4	chr6	13073073	13073273	+	938.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027992, intron 3 of 8)	L2|LINE|L2	3414.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	4.65617328756136	4.30970730539282	4.86165295502175	4.96119980620918	4.5388782595333	4.18056775427861	4.39284619112279	4.36412458639863	-0.774938373698371	0.052092489635715	0.237638539173175
Merged-chr6-142708647-4	chr6	142708535	142708735	+	879.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6361.0	NM_001310143	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	4.73700658190088	4.18050007505568	4.21524907246119	4.35948647241534	4.46804773614728	4.73003190647078	4.54099362976821	4.26113115596251	0.277672186456011	0.484594582147725	0.758687263828368
Merged-chr13-75893054-3	chr13	75892958	75893158	+	989.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028493, intron 7 of 11)	intron (NM_028493, intron 7 of 11)	50766.0	NM_028493	73296.0	Mm.276200	NM_028493	ENSMUSG00000021589	Rhobtb3	1700040C17Rik|2610033K01Rik|4930503C18Rik|AI317148|AW208826|mKIAA0878	Rho-related BTB domain containing 3	protein-coding	3.56101781038624	3.98131311319062	3.64075431487322	3.11567930989965	5.58527190535221	4.88592011509999	5.23989461843558	5.08497286804511	4.11245023490128	7.59871312398559e-19	2.22579753684021e-16
Merged-chr7-89216856-4	chr7	89216752	89216952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 5 of 14)	intron (NM_001360746, intron 5 of 14)	121935.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	6.38068624834383	5.90134021178532	5.57164580034266	5.98690999529644	5.96978829495071	6.08596829615212	5.73596416879746	5.88324052449741	-0.104980845619253	0.70453567681436	0.881307709007534
Merged-chr4-133585055-1	chr4	133584955	133585155	+	690.0	f0_balb.idr	TTS (NM_172876)	TTS (NM_172876)	682.0	NM_133884	100210.0	Mm.274001	NM_133884	ENSMUSG00000028848	Gpn2	AI838661|Atpbd1b|R74630	GPN-loop GTPase 2	protein-coding	3.82320990861513	4.36978212979035	3.72584810030264	3.2088663850276	3.44514920428301	3.62529357153611	3.30051920409496	3.37734810883332	-1.26568766416419	0.0329429924590338	0.178139425681195
Merged-chr16-10441516-4	chr16	10441437	10441637	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013778, intron 1 of 6)	L1MB2|LINE|L1	5825.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	5.30093473514058	5.40005578591781	4.95602202517373	5.79085490793292	5.42803666044231	5.24726992950247	5.18200965582682	5.23612131783145	-0.248792966426704	0.451743095007623	0.736246988273402
Merged-chr10-70201045-4	chr10	70200963	70201163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3601.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	5.80670713867112	5.82767209030692	5.72994949154911	5.69906289173669	6.03404796429456	6.2928206598541	6.25175548246032	6.22680800662887	0.687447856089014	0.00374732241973591	0.0380554519210133
Merged-chr17-46874268-4	chr17	46874162	46874362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16359.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	6.2974100255214	6.37348618855849	5.9636930743944	6.13065698295855	6.40803946348435	6.52741616791591	6.22915988707832	6.19864456303471	0.225866644064115	0.335470273139117	0.645877811487311
Merged-chr2-90613179-4	chr2	90613071	90613271	+	841.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32524.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.91242862655598	3.87609333552204	3.32566913368393	3.63294492076106	4.12739735339721	4.03542699296519	3.74711569066357	3.86242215596362	0.714666369268167	0.143492226551734	0.42182435855639
Merged-chr5-118647606-4	chr5	118647529	118647729	+	931.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	86910.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	5.82495464708638	5.87905761335272	5.56564055111146	6.19584922819494	4.71906024075091	4.94292538646284	5.03189275376467	5.53511555034575	-1.4285305040804	2.07495034231048e-05	0.000525597474787607
Merged-chr15-34096551-3	chr15	34096464	34096664	+	902.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357925, intron 1 of 10)	intron (NM_001357925, intron 1 of 10)	13845.0	NM_001357925	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	4.03242639562505	3.53556995414372	4.12381308673818	4.18120411815636	3.94746714297262	4.1082762664128	3.8678443956877	4.1642077367456	0.0686395090900481	0.883006059711596	0.955912021732991
Merged-chr3-81036257-4	chr3	81036206	81036406	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019971)	promoter-TSS (NM_019971)	-110.0	NM_019971	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	5.48146576755702	4.97039208538825	5.50671136365241	5.0532277346754	5.10440267857999	4.99890096155322	4.9145161854616	4.97188445349548	-0.486500415278444	0.140163976599058	0.41621742554628
Merged-chr10-75765252-4	chr10	75765072	75765272	+	995.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172549)	promoter-TSS (NM_172549)	-815.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	3.68356226450498	3.55205725718683	3.88782953331075	3.83537848047346	3.70936198096476	4.00910630833051	3.66972911705897	3.88546701647036	0.204315942072471	0.660266263592982	0.858757569392328
Merged-chr5-150665710-4	chr5	150665616	150665816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201369)	promoter-TSS (NM_201369)	-104.0	NM_201369	381695.0	Mm.246934	NM_201369	ENSMUSG00000029655	N4bp2l2	2700092H06Rik|Gm38758|zag1	NEDD4 binding protein 2-like 2	protein-coding	9.05069825612919	9.10627776244657	9.04520834820957	9.19158693353013	9.02364798438393	9.18470370691421	9.15108756657686	8.90515743978031	-0.0409766777376179	0.777813210890153	0.913396205812139
Merged-chr9-78451585-4	chr9	78451470	78451670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026658, intron 3 of 11)	RSINE1|SINE|B4	3360.0	NM_026658	68291.0	Mm.291779	NM_026658	ENSMUSG00000032342	Mto1	2310039H01Rik|5730419A02Rik	mitochondrial tRNA translation optimization 1	protein-coding	5.86843036527156	5.78230286583526	6.39457058943065	6.20849518599955	6.01542537862571	5.81082748741343	6.17457273845979	5.86529157417515	-0.178878688966118	0.503769387726782	0.770586107991984
Merged-chr1-21271565-3	chr1	21271474	21271674	+	844.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26738.0	NR_002858	241041.0	Mm.290634	NR_002858	ENSMUSG00000025936	Gm4956	EG241041	predicted gene 4956	pseudo	3.67860371315712	3.78583623934953	4.85885411477331	4.06557287174685	3.28636166769194	3.74164101584469	3.72268503423288	3.79230421162424	-1.48225005846049	0.00962719999955339	0.0768394784445179
Merged-chr17-78200805-4	chr17	78200670	78200870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_015800, exon 1 of 17)	exon (NM_015800, exon 1 of 17)	522.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	5.62809725700141	5.61659387547827	5.52544774974766	5.41014351554007	5.22408887720937	5.72564348244686	5.47055092276276	5.34838552890009	-0.166068257819403	0.560886859813264	0.804760543341901
Merged-chr7-114577125-3	chr7	114577021	114577221	+	808.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14149.0	NM_177382	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	3.48191361209806	3.40643599755792	3.48237744841657	3.68681180142419	3.37829600260077	3.48043081274602	3.66935952236074	3.36567250968076	-0.175940889101744	0.7296567337818	0.89274334182231
Merged-chr7-121034436-6	chr7	121034284	121034484	+	920.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021554)	promoter-TSS (NM_021554)	-61.0	NM_021554	59052.0	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	5.69765707918999	5.76226450433081	5.17104224312157	5.05748955370278	5.99573229117526	5.92421309259533	6.13038832384607	5.96817232235335	0.928762739564403	0.00174578887759573	0.0210502621382935
Merged-chr9-32668228-4	chr9	32668120	32668320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27822.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	5.96216587801855	5.72139572278785	5.96321918643792	6.25311808328953	5.54126383471421	5.70656842266658	6.03622866265211	6.04285719438043	-0.256066826340246	0.358946066474058	0.664897874786135
Merged-chr8-11461117-4	chr8	11460982	11461182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-16847.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	8.21127460964203	8.2139892056964	8.28674748326985	8.11409000288416	8.10802062371361	8.24704810148153	8.09521082043656	8.18346355890981	-0.0586211927104375	0.702215201901166	0.880055600344711
Merged-chr15-44617115-4	chr15	44617003	44617203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2124.0	NM_001357690	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	5.39849977100678	5.27761563129248	5.79359935314786	5.32987561744219	5.23512215657086	5.13588429815019	5.6075273015083	5.42425175325092	-0.167776676908517	0.583432720891391	0.817135070057298
Merged-chr3-89913207-4	chr3	89913109	89913309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310676)	promoter-TSS (NM_001310676)	-13.0	NM_010559	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	7.46164893338094	7.56545390603389	7.44372570011657	7.3523240099456	7.41321625126583	7.74930255296281	7.57782352501185	7.40923045534888	0.114328784982406	0.528041858581314	0.784714939389927
Merged-chr6-145196757-2	chr6	145196659	145196859	+	586.75	f0_balb.idr|f1_c57bl6.idr	intron (NM_177222, intron 6 of 15)	intron (NM_177222, intron 6 of 15)	14211.0	NM_177222	320662.0	Mm.207779	NM_177222	ENSMUSG00000043541	Casc1	A230084G12Rik|Las1	cancer susceptibility candidate 1	protein-coding	3.02837214629013	2.89781802880386	3.12711920724579	2.8584206375772	2.26584394116133	2.4011347936702	2.37569569937147	2.53634988635907	-4.38820420183948	4.6295674866203e-05	0.00105787474841138
Merged-chr4-142094509-4	chr4	142094405	142094605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10201.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	6.64897406150006	6.78904252910615	7.11679666381057	7.09665398149472	5.579609288514	5.14286916157091	5.70898524294237	5.89652748123581	-2.01360277328019	1.80791674129421e-13	2.23801227354053e-11
Merged-chr7-100856440-4	chr7	100856334	100856534	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	6979.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	5.16004785598036	5.1552505889455	4.77217945919145	5.15341833021977	5.20893973654061	4.86633570421787	5.19438530609697	4.7272521636775	-0.0981523923414732	0.769260552347141	0.909742530773464
Merged-chr8-104110937-4	chr8	104110837	104111037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 1 of 11)	intron (NM_009868, intron 1 of 11)	-5064.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	7.84181081672688	7.97423803550239	8.29017280501253	8.21714443199467	7.99214103005174	7.83940613298218	7.91511495628029	7.94796340979119	-0.219716319844707	0.210823611069184	0.515470506828542
Merged-chr11-70777394-4	chr11	70777284	70777484	+	952.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12937.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	5.12438741850716	4.77313454202461	4.81573267378132	4.90294714217819	5.21744493620733	4.69260193364136	5.15897673642963	4.99352581947956	0.261016045605795	0.4324989398631	0.722547106992339
Merged-chr13-113800420-4	chr13	113800319	113800519	+	919.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	5911.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	4.87879111028648	4.41492286243259	5.01201929342365	5.16060029947039	4.49898444686176	4.86708870196159	4.78488753853389	4.80459459238211	-0.344933788498113	0.356227626773527	0.662709449468463
Merged-chr19-21271365-4	chr19	21271261	21271461	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009551)	promoter-TSS (NM_009551)	-917.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	4.32245508399514	3.93316802728905	4.14139296866549	4.32811499303264	4.06084323945076	4.11095966313543	4.30334953189873	4.7160226206975	0.302385023641192	0.485729217839076	0.759541990231482
Merged-chr13-41596544-3	chr13	41596428	41596628	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9688.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	4.16404900553667	3.95834507580451	4.51408298282857	4.61726160145422	4.44425065346062	4.18554055890285	4.53007355594916	4.43242392388821	0.120863903430807	0.774793727042544	0.912021741671952
Merged-chr10-13988414-4	chr10	13988287	13988487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	22008.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	7.66418890411043	7.67869507366356	7.54360267139432	7.76181346144922	7.59968027542459	7.70238862805306	7.5687256841979	7.52003674208293	-0.0954555302843549	0.570893037329981	0.810266997522238
Merged-chr9-118748547-3	chr9	118748424	118748624	+	804.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	36832.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.02212309960247	3.95911197781517	4.53461400089321	4.65293517554677	3.00919560415926	3.379939994258	3.32151186101352	3.17551779506777	-4.39019825047195	7.65069310198163e-09	4.14950915602291e-07
Merged-chr8-88228984-4	chr8	88228888	88229088	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164499, intron 2 of 11)	intron (NM_001164499, intron 2 of 11)	29775.0	NM_001164498	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	5.14785794736555	5.02483468135518	4.94637839431247	5.11656139046532	5.01389259756041	4.88583869394331	5.3489397131618	5.04815669430513	0.0377315350811725	0.904162542193039	0.964538903811323
Merged-chr19-5002296-4	chr19	5002178	5002378	+	891.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12307.0	NM_153553	225872.0	Mm.287867	NM_153553	ENSMUSG00000045903	Npas4	LE-PAS|Nxf	neuronal PAS domain protein 4	protein-coding	4.18364180848626	4.53256376257618	4.31352639431369	4.02716758492792	4.31386056668665	4.21547405869782	3.91952307709994	3.7578041613006	-0.489496541778025	0.279799869123168	0.591853636978245
Merged-chr15-76700792-4	chr15	76700682	76700882	+	840.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027122)	promoter-TSS (NM_027122)	-760.0	NM_027122	69572.0	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding	4.21814600488334	3.96344891696583	4.08536471923908	4.15163965769602	3.88756410754029	4.30150141702621	3.86747405816528	4.12887057851539	-0.153326891909721	0.719374323517914	0.887930196082258
Merged-chr16-31081407-4	chr16	31081311	31081511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198626)	promoter-TSS (NM_198626)	21.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	7.53923467804907	7.56676215233052	7.50433883127825	7.53193600478829	7.38633732392889	7.52539052058898	7.42071240986108	7.33260588883874	-0.160062019296276	0.343596632988907	0.652264111594778
Merged-chr2-119873064-8	chr2	119872881	119873081	+	976.2604369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-24247.0	NM_001164274	29808.0	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	4.27858911059236	4.28381742780392	4.48077565478311	4.27732901506089	3.85888398663628	4.16480491847894	4.12331428115696	4.44003794090893	-0.436414670084918	0.294133079256419	0.606508581783245
Merged-chr11-106663876-3	chr11	106663789	106663989	+	822.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 13 of 14)	intron (NM_001305158, intron 13 of 14)	-50959.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	3.96140035059037	3.63377988167173	3.78085715224198	3.75285690619362	3.68346350462196	3.5641203746496	3.61157970725859	3.56753438010317	-0.531391210044526	0.261234284656387	0.573140435457786
Merged-chr1-118569657-1	chr1	118569557	118569757	+	695.0	f0_balb.idr	intron (NM_001359330, intron 33 of 39)	ORR1D2|LTR|ERVL-MaLR	-58288.0	NM_023755	81879.0	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	3.49767576736693	3.12681959787186	3.24452286123843	3.30213379964062	2.8676059690062	2.88586403206179	3.11580321858647	3.35023891982313	-0.910334687101726	0.13445464184576	0.4081057574053
Merged-chr3-126611089-3	chr3	126610985	126611185	+	966.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	14134.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	5.12066365558096	5.3250663396588	5.09340492480885	5.03273554103378	4.35099082257873	4.05688965681609	4.10077629822932	4.22956090886465	-2.10852166298654	7.95887659013454e-08	3.47123086280139e-06
Merged-chr8-71463656-4	chr8	71463544	71463744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022419)	promoter-TSS (NM_022419)	13.0	NM_022419	64296.0	Mm.276383	NM_022419	ENSMUSG00000007950	Abhd8	0910001L24Rik|AB030191	abhydrolase domain containing 8	protein-coding	7.12591337072551	7.05789497563723	6.89268427055214	6.73453374009521	7.14295362846705	7.00007775018895	7.05722589909077	6.8741696540361	0.106910198032308	0.599036494727501	0.826146116839364
Merged-chr12-40486653-4	chr12	40486571	40486771	+	780.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	40618.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.0645434055772	4.16568004120242	3.96734470647063	4.03316483201951	4.0016003815535	4.40853762787032	4.093181493082	3.61967006425582	-0.00554674940703718	0.990253497368404	0.996152324385859
Merged-chr11-101642091-4	chr11	101642031	101642231	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14182.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	5.22114083447524	5.61263906525953	5.25157288610019	4.87496295010228	4.89979560879291	4.93918728972369	4.85836789735755	5.05959360543069	-0.605948283691942	0.0766885993799259	0.299331970567216
Merged-chr5-67426378-2	chr5	67426278	67426478	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164806, intron 1 of 4)	intron (NM_001164806, intron 1 of 4)	1421.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	2.85084424272809	3.04175677215757	2.85120287141585	2.64763536173592	2.69116540641745	2.51880370783322	2.84083016938414	3.12755774636144	-0.177799418939411	0.795820574051205	0.920948700012856
Merged-chr1-182960266-4	chr1	182960163	182960363	+	984.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016928, intron 1 of 3)	intron (NM_016928, intron 1 of 3)	5475.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	5.2764834576127	5.11271492749208	5.30606923060172	5.29512963841975	4.94288582373615	5.19617200301433	5.1921840977363	4.82688840439684	-0.39358540351121	0.199891773682807	0.50185984431534
Merged-chr4-105242649-3	chr4	105242565	105242765	+	924.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	85318.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	2.64088815627808	2.5734938153853	2.5575323662524	2.30788197187096	3.55658486167078	2.98351340357378	3.4557395009512	3.33200371402478	4.52521363276139	2.68980397754864e-09	1.59547964431612e-07
Merged-chr9-47595449-4	chr9	47595355	47595555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	65103.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	5.81459225776346	5.8115014825352	5.34792332547445	5.57017423475229	5.82416641262517	6.07746253818908	5.35411351030804	5.83425163260508	0.245582885707403	0.399876608221207	0.697931153338137
Merged-chr7-141394306-4	chr7	141394191	141394391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011528, intron 1 of 7)	L1MC4a|LINE|L1	2131.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	6.92263588284317	6.73951168022092	6.94760819310894	6.63025787026565	6.37221997831075	6.28737878161486	6.18558087030244	6.27450231712684	-0.757609295158896	0.000539738749872742	0.00821249775057545
Merged-chr15-59665620-4	chr15	59665570	59665770	+	877.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17016.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	3.97457780154899	4.15368352192933	4.56030077140932	4.55338223788211	3.86242514278431	3.66308304048648	4.36017081114392	3.97286653621666	-0.897355356100154	0.0605454165350689	0.260052547978977
Merged-chr9-106242947-4	chr9	106242845	106243045	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020559, intron 3 of 10)	intron (NM_020559, intron 3 of 10)	4785.0	NM_001291835	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	5.02181003153833	5.25689303419548	5.18118603661638	5.01315796874687	4.80823889401997	4.93898581914112	5.18463118313693	4.67283283059468	-0.402869610917894	0.218654014791204	0.525920796094451
Merged-chr10-67047904-4	chr10	67047801	67048001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	42826.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	6.28528330604062	6.12845572977728	5.87789400385826	6.25441951965377	6.18799214681284	6.12424699284489	5.61181749619363	5.82458884574231	-0.290595384358762	0.273539010413209	0.585166147392835
Merged-chr2-148375640-4	chr2	148375609	148375809	+	630.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19668.0	NM_009219	20608.0	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	3.34281788792776	3.63926477731592	3.40330089046655	3.26025913392351	3.21870592851722	3.39476565313026	3.69809064057216	3.75774560202198	0.389323732905682	0.468817979788701	0.747933343931938
Merged-chr4-11475529-4	chr4	11475415	11475615	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10443.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	4.05496349978196	3.66225144595951	3.79575205094885	4.14698950429402	4.17681885044271	4.02844616796033	4.46694355703425	3.90370782930086	0.577166057527297	0.212150264937042	0.517003687618245
Merged-chr4-148662278-3	chr4	148662082	148662282	+	701.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085505, intron 5 of 10)	intron (NM_001085505, intron 5 of 10)	18865.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	2.90801613408125	3.00453672574934	3.10602498731542	2.99540770691965	3.57054379464066	3.15339652544334	3.21038904692573	3.22130488426359	1.16948066652061	0.0386608525838523	0.197334107699754
Merged-chr1-138297933-4	chr1	138297817	138298017	+	811.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	24179.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	4.07396377903299	4.03151274044857	4.07457430007894	3.87619941197087	3.98516134024213	3.993658901757	4.18884179506741	4.24683536834479	0.264410033269363	0.524516664150812	0.78299900785164
Merged-chr4-108780736-4	chr4	108780644	108780844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347163, intron 1 of 18)	CpG	344.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	5.82423877840474	5.85232068881755	5.80093224041274	5.85226289152029	6.08793481794232	5.6462280063674	6.14775007358696	6.00059258381533	0.252651299288941	0.313987597424034	0.62599967947245
Merged-chr16-30009800-3	chr16	30009704	30009904	+	965.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033631, intron 1 of 2)	intron (NR_033631, intron 1 of 2)	1137.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	3.30375151576874	3.60045904920693	3.84200305764317	3.99716416844955	3.37032120306391	3.48319309511684	3.41869825669044	3.65078995246003	-0.771407912132186	0.151315263819795	0.434819102278127
Merged-chr5-143112565-3	chr5	143112489	143112689	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080561, intron 1 of 16)	CpG	431.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	5.22178934338783	5.38912675750876	5.83626710224209	5.26506832154461	5.56314916526181	5.61768709023413	5.49866467008438	5.57549180144012	0.216304119319119	0.459413609874858	0.741935750561435
Merged-chr13-8871106-4	chr13	8871001	8871201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172445)	promoter-TSS (NM_172445)	-57.0	NM_172445	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	7.37058349055634	7.05121123770252	7.34122704316766	7.38204154471551	7.49738678532237	7.60793349588204	7.645080626094	7.38672694546709	0.321576285864874	0.081812222602167	0.310444194082506
Merged-chr2-60209836-4	chr2	60209752	60209952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020575)	promoter-TSS (NM_020575)	-84.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	7.81575454092962	7.82516514880925	7.49571854676102	7.58563149645347	8.19622858690943	8.11145035387739	7.98307504578384	7.86424646038817	0.470866873427568	0.00818630543829333	0.0682070741884913
Merged-chr9-114753000-4	chr9	114752892	114753092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	21789.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	8.46030559279352	8.72050400785506	8.43583104948471	8.41579924348526	8.63686068495529	8.80686669998522	8.85793424557768	8.4304001272942	0.225800205861267	0.185000650607065	0.482739251761869
Merged-chr6-116073118-4	chr6	116073004	116073204	+	993.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-78099.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	6.27014530327206	6.69863741172987	6.48587665980446	6.10164556030424	5.96799165024099	5.94873340899253	5.76619198705134	5.46645733057966	-0.922505949113582	0.000805064869009819	0.0113025073592209
Merged-chr8-78509330-4	chr8	78509214	78509414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009033)	promoter-TSS (NM_009033)	-14.0	NM_001282109	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	4.84392606140035	5.07512867353125	5.07074371466013	5.19887347377928	5.1566683759375	5.49255906959278	5.32218844721599	5.22921057375836	0.428542564133998	0.161813066185645	0.450807947004893
Merged-chr11-80183443-1	chr11	80183343	80183543	+	1000.0	f1_balb.idr	promoter-TSS (NM_028019)	promoter-TSS (NM_028019)	-429.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	3.45269596511597	3.65352492710638	3.90659633631632	2.89046004894979	3.4944956629033	3.94283021198514	3.43974272060973	3.51003530898356	0.246607621916618	0.684041219913179	0.870541212090115
Merged-chr3-88950466-2	chr3	88950372	88950572	+	1000.0	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022994)	promoter-TSS (NM_022994)	-190.0	NM_001164533	65111.0	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	5.87892611998848	5.71911567112654	5.76603842253442	5.39146984431005	5.5241450398942	5.762840215736	5.68840270312733	5.85381101824256	0.0390228886146325	0.888129731668313	0.958035048245529
Merged-chr12-112146504-4	chr12	112146441	112146641	+	843.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097621, intron 1 of 15)	CpG-3550	333.0	NM_001097621	668303.0	Mm.313104	NM_001097621	ENSMUSG00000021294	Kif26a	mKIAA1236	kinesin family member 26A	protein-coding	4.07106068734791	3.98452045726165	4.11617510388055	3.793754437949	4.19004311621419	3.997896241528	3.69451614495442	4.02313205900309	0.0289331206805151	0.948380991913437	0.981405482896336
Merged-chr7-45458383-7	chr7	45458333	45458533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010240, intron 3 of 3)	intron (NM_010240, intron 3 of 3)	1453.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	5.10004869016249	5.3207520041613	4.87445924783606	4.89408760325114	5.28672712099319	5.37565607610794	5.48373515760886	5.55690366212287	0.683810266328129	0.0243424112217996	0.145799255824542
Merged-chr16-65378471-4	chr16	65378339	65378539	+	980.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-142190.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	4.96778908899805	5.06342571688844	4.8569939194271	5.1501907894411	4.95069817580721	4.95483434037443	5.4820174874408	4.89204372958247	0.12791043618434	0.701917470214901	0.879918696943051
Merged-chr16-31200198-9	chr16	31200047	31200247	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030138, intron 1 of 22)	intron (NM_030138, intron 1 of 22)	1091.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	5.61204503975677	4.95472978659427	5.44609923856932	5.30432085273825	5.10051121142818	4.92969057657145	4.92819599671839	4.9484858528526	-0.675849110085592	0.0377526683668474	0.194273943152388
Merged-chr5-45857845-4	chr5	45857708	45857908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163073)	promoter-TSS (NM_001163073)	-268.0	NM_001359873	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	8.85079775741183	8.88469469547529	9.2859825228703	9.0270520202339	8.88353444097872	9.11126019388602	9.23988868173046	8.91267668848436	0.024788241662702	0.88456734541215	0.956624037971431
Merged-chr16-93042098-2	chr16	93041998	93042198	+	948.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-216024.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	2.75673562666422	2.73615686046531	2.82385277065312	2.78510543943603	2.76292777001528	2.93241469153247	2.87700242648403	3.25945593626723	0.843349245084735	0.173870415854703	0.46804032713569
Merged-chr2-145806485-4	chr2	145806367	145806567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	20351.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	6.73686574441798	6.78787767964407	6.95006684297577	6.55484629189924	6.32523996582373	5.97314926995243	6.0411660247522	6.17809109633934	-0.897794399543517	0.000122422602429648	0.00239986736941336
Merged-chr5-99235133-4	chr5	99235026	99235226	+	940.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	17801.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.65186146302494	4.55427859626369	4.23856086999056	4.45935100383477	4.97570044945658	5.03939841797903	4.63078918896946	4.72599015859346	0.793628672051752	0.0261079095619518	0.152936786660371
Merged-chr16-10489762-4	chr16	10489635	10489835	+	819.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243761)	promoter-TSS (NM_001243761)	-46.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	3.88085089967228	3.50312238971861	3.6861058430344	3.68060645822724	3.79229698517985	3.63306855801559	3.77147488164645	3.68404435029359	0.10476739958128	0.822265533383424	0.932123561087733
Merged-chr7-118491192-1	chr7	118491092	118491292	+	1000.0	f1_balb.idr	exon (NM_001033380, exon 1 of 1)	exon (NM_001033380, exon 1 of 1)	783.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	4.5773234389842	4.93275725914835	4.9272607916597	4.59578984668492	4.68438882837132	4.91968053924675	4.86919656559774	5.11244676615619	0.282412179131876	0.414436920772614	0.709044594374843
Merged-chr18-50033022-4	chr18	50032920	50033120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360935, intron 1 of 1)	intron (NM_001360935, intron 1 of 1)	2036.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	7.02223757982261	7.23387671274582	7.00052164350914	6.73637279140578	6.33567855150167	6.67147851320532	6.19221095762892	5.87918795922549	-1.0164057280981	5.78976892717026e-05	0.00128263293640539
Merged-chr8-60870995-4	chr8	60870885	60871085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19408.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	5.29198449913369	5.38485190207327	5.41416504596944	5.71484066139527	5.07933181090201	5.40478644139075	5.81951195152061	5.35124868742049	-0.0731763604054543	0.818004139667649	0.930137011684137
Merged-chr10-80245860-4	chr10	80245774	80245974	+	962.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023431)	TTS (NM_023431)	-3578.0	NM_029272	75406.0	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	4.25457090730734	4.58012192127268	3.86415109874047	4.58231494889169	4.63149225658315	4.72696029815709	4.13733041976482	4.62807260841449	0.421012133854522	0.341213221899783	0.650294953454124
Merged-chr10-84409481-3	chr10	84409364	84409564	+	811.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	31007.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	3.54530995927846	3.50496112941408	3.37703516280562	3.46723921141788	3.53349011995192	3.66111598354079	3.42297984202233	3.54381741800077	0.221933462928387	0.648841194565335	0.852446885967846
Merged-chr12-55518121-2	chr12	55518021	55518221	+	967.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25474.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	3.18162395137625	3.24060707430231	3.11621668878054	3.39908468770751	3.26575786414011	3.41843305892668	3.23313221011873	3.78336265784098	0.672653732545593	0.230494074466835	0.539966354873448
Merged-chr9-14784432-6	chr9	14784255	14784455	+	940.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310728)	promoter-TSS (NM_001310728)	218.0	NM_019683	56503.0	Mm.272618	NM_019683	ENSMUSG00000031931	Ankrd49	AW060934|C86108|Gbif	ankyrin repeat domain 49	protein-coding	4.16224324219883	4.16956648880988	4.47416538124102	4.41136393525676	4.33945304426154	4.52195857889275	4.09476878400516	4.65423547868098	0.232276870322531	0.562716302768794	0.805801679832791
Merged-chr12-71017105-3	chr12	71017020	71017220	+	943.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081195, exon 2 of 24)	5' UTR (NM_001081195, exon 2 of 24)	1153.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	3.5083932108591	3.2288800195051	3.15617914513353	3.31493783601049	3.26993583946385	3.39819616210172	3.4941521578129	3.6971733796818	0.55997030737334	0.290970290653511	0.603241620011248
Merged-chr1-52722798-4	chr1	52722709	52722909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357464, intron 1 of 7)	intron (NM_001357464, intron 1 of 7)	4509.0	NM_178081	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	6.66036962786304	7.39844928370498	7.24785706101315	7.48969868402762	7.15797470161464	7.16599100091908	7.26355359815983	7.05973639884963	-0.115886113056119	0.611283529776771	0.832251855180034
Merged-chr3-142490660-4	chr3	142490562	142490762	+	918.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-6272.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	5.28401995022459	5.49553677205472	4.96331896006816	5.18010387481496	4.99494927521748	5.02632026385511	4.97537918493224	4.88477961949798	-0.520827047366296	0.0996435842810623	0.346218223703981
Merged-chr6-50110759-3	chr6	50110656	50110856	+	996.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361247)	promoter-TSS (NM_001361247)	-104.0	NM_001361247	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	4.81917219984248	5.0091578524502	5.56078710479592	5.07460594456555	4.32432254742839	4.61518979747373	4.4605317275759	4.73981523181158	-1.25630543090141	0.000812783057756052	0.0113839207532503
Merged-chr11-109369366-4	chr11	109369252	109369452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-5698.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	8.13468402707873	8.21444977096889	8.26046902968996	8.28083978659732	8.17204946356433	8.07384279954574	8.12208011051141	8.06018107949322	-0.149049372878985	0.326294039041323	0.637829440170333
Merged-chr1-156035638-2	chr1	156035532	156035732	+	1000.0	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_001160019)	promoter-TSS (NM_001160019)	-32.0	NM_172843	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	5.85179848883386	6.28997214818704	6.10180814607483	6.28871943230456	6.02370973999654	6.33668648899518	6.02907593807531	5.87341632030792	-0.131529385325252	0.602628444396168	0.827786670034761
Merged-chr17-40824721-3	chr17	40824600	40824800	+	759.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011269, intron 1 of 9)	Lx8|LINE|L1	13551.0	NM_011269	19743.0	Mm.12961	NM_011269	ENSMUSG00000023926	Rhag	CD241|Rh50|Rh50A	Rhesus blood group-associated A glycoprotein	protein-coding	3.12743959242021	3.34508081173	3.4790105179469	3.18988642927673	3.39534199952904	3.54176929680315	3.35897891831047	3.31344077292543	0.418267840892432	0.425279139038166	0.716811362481592
Merged-chr1-177713825-4	chr1	177713725	177713925	+	867.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-15989.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	4.30485139003983	3.92722505502952	4.13652506242451	4.04515292433247	4.02472924470149	4.26161769411115	3.97658750845678	3.99083971826061	-0.100907052605287	0.810102665672619	0.926776956547369
Merged-chr18-80853534-3	chr18	80853439	80853639	+	735.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_015805, intron 8 of 28)	RMER6A|LTR|ERVK	80519.0	NM_001201569	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	3.70014225535441	3.87320970234963	4.25386459909449	4.2382993186795	4.17624164045312	4.05227314798606	3.86078488728015	4.36784450652449	0.210727118221353	0.647360589874527	0.851663990750781
Merged-chr17-78455315-4	chr17	78455213	78455413	+	788.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37161.0	NM_001285940	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	4.35975270967666	3.88474943260441	4.03676161401012	4.46052732389872	4.15883181213233	4.56928289143265	4.21280322057432	4.18296563638758	0.164626659815527	0.705011437515247	0.881563627356675
Merged-chr14-121797849-4	chr14	121797746	121797946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134074)	promoter-TSS (NM_134074)	-112.0	NM_134074	105445.0	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	6.72852068221016	7.09332361506345	6.7001300041355	7.03229542542162	6.68798517360154	6.20679181175216	6.52418228637888	6.83662922253678	-0.452870649652779	0.0530627561818895	0.240238333279784
Merged-chr11-98660664-4	chr11	98660552	98660752	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3699.0	NM_021347	57911.0	Mm.458085	NM_021347	ENSMUSG00000017204	Gsdma	BB149167|Gsdm|Gsdm1|Gsdma1|H312E	gasdermin A	protein-coding	5.68269023256344	5.83493368862229	5.30301433744149	5.42131268940952	5.63253370908386	5.75400374823627	5.8196125659361	5.9717412046729	0.372812030402676	0.180357746686257	0.476699956238305
Merged-chr6-6217149-4	chr6	6217045	6217245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015829)	promoter-TSS (NM_015829)	28.0	NM_015829	50799.0	Mm.24513	NM_015829	ENSMUSG00000015112	Slc25a13	AI785475|Ctrn	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	protein-coding	6.66846410861045	6.933147219756	6.79686807075719	7.2344106345885	6.0417101493245	6.05026802476805	6.46096079757849	6.47244507972641	-0.97411818887093	7.5120648576756e-05	0.00159042612880575
Merged-chr8-124520732-4	chr8	124520628	124520828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029746)	promoter-TSS (NM_029746)	-39.0	NM_029746	76332.0	Mm.240108	NM_029746	ENSMUSG00000031979	Cog2	1190002B08Rik|2700012E02Rik|C86089|Ldlc	component of oligomeric golgi complex 2	protein-coding	7.89916315199835	7.74554171368254	7.60496982081016	7.63595430734397	7.82457734289817	7.91023892101984	8.15722538575142	7.92333610670875	0.306648321677442	0.0791395909040086	0.30441082892472
Merged-chr2-60884203-4	chr2	60884112	60884312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	MLT1M|LTR|ERVL-MaLR	-2774.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	6.71484997246096	6.73933244593036	6.22121942290745	6.51157586534679	6.81612641624943	6.7699572554315	6.91961548030832	6.76836664695147	0.368360244160363	0.0883237593868961	0.324245544865639
Merged-chr2-129565142-4	chr2	129564978	129565178	+	880.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27761.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	3.22085483298784	3.31438597761503	3.64584368834718	2.77403743779518	3.27648944291362	3.45788191242798	3.43608170480257	3.2807652879889	0.321843888377235	0.597772510111463	0.825585260217697
Merged-chr18-62068186-4	chr18	62068095	62068295	+	777.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	111786.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	3.80779979058684	3.74290990589826	3.53494219247188	3.44914022789101	3.67965648933955	3.82539873173587	4.01466233302308	3.80608380610646	0.608010549943492	0.196374125146007	0.49739576360827
Merged-chr8-126569578-3	chr8	126569497	126569697	+	929.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23839.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	3.62403573798095	3.24787748342183	3.52632806891363	3.66769529830223	3.28781055387309	2.98847001993522	3.3504971745276	3.5742719781351	-0.736450783432264	0.200404438590434	0.502485838102051
Merged-chr18-23749799-4	chr18	23749698	23749898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_126066)	TTS (NR_126066)	2507.0	NR_126066	100502834.0	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	-	predicted gene 15972	ncRNA	6.72151697345378	6.53527842720007	6.28231835715194	6.73750506292813	6.70231612387053	6.68131121801091	6.64504885002147	6.59812850667221	0.0942956465842406	0.663347029768165	0.860482180927763
Merged-chr11-76763626-4	chr11	76763527	76763727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016810)	promoter-TSS (NM_016810)	-49.0	NM_001356321	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	6.80671993697083	6.48582577938278	5.76659867012525	6.22803911332556	6.65265836558526	6.55017279331031	6.5830987006541	5.94927659541251	0.136372775474246	0.64772656727831	0.851815784430537
Merged-chr5-68048932-4	chr5	68048831	68049031	+	831.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001018019, intron 1 of 3)	intron (NM_001018019, intron 1 of 3)	17096.0	NM_001018019	433899.0	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding	3.6747609376587	3.7010978455868	3.79068756259453	3.78938042297603	4.41611006775802	4.01924843601824	4.02353217044323	4.08369017446049	1.12125388885861	0.0103793162819243	0.0811127366375463
Merged-chr1-46849950-4	chr1	46849847	46850047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356416, intron 1 of 10)	intron (NM_001356416, intron 1 of 10)	3671.0	NM_001356416	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	6.72437786876876	6.40776323791165	6.08166176279264	6.83504484078686	6.58474813544099	6.62073422585053	6.4285611451737	6.58805996445031	-0.00356910228499013	0.988493202872549	0.995465556823073
Merged-chr2-118053763-1	chr2	118053663	118053863	+	819.0	f0_balb.idr	intron (NR_126479, intron 4 of 9)	LTR41B|LTR|ERVL	57439.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	3.59019104720664	3.74795922833052	3.64298029001504	3.72801754695223	3.17492399193567	3.53521678699231	3.34630266025906	3.78569124897201	-0.677342104232571	0.198854845300848	0.500526867107314
Merged-chr19-8941886-4	chr19	8941789	8941989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011842)	promoter-TSS (NM_011842)	-31.0	NM_011842	23942.0	Mm.25339	NM_011842	ENSMUSG00000071646	Mta2	AW550797|Mata1l1|Mta1l1|mmta2	metastasis-associated gene family, member 2	protein-coding	7.46196052960425	7.56281141676121	7.05589432587609	7.17222954895612	7.62457617304234	7.15547274635664	7.17450470720658	7.06352366644313	-0.0574654819059503	0.796918091798644	0.92145474838993
Merged-chr16-14352275-4	chr16	14352188	14352388	+	831.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9270.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	3.84439257720046	3.74131736900036	3.621497931469	3.66179425367264	4.07564105831262	4.36713840689729	3.77706591855038	3.79036154878956	0.864324465671491	0.0605934905057216	0.260068985812033
Merged-chr10-62896060-4	chr10	62895972	62896172	+	697.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8748.0	NM_001253857	52463.0	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	3.58127119894791	3.54750851014908	3.68773392106003	3.81744471115463	3.72153787263004	3.313137978575	3.39319862221779	3.99838439609502	-0.0884969070178871	0.867201161690638	0.950297561796699
Merged-chr11-5521577-4	chr11	5521442	5521642	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013842, intron 1 of 4)	CpG	901.0	NM_001271730	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	5.04917471345787	5.14115309914108	5.11483006908131	4.69134654439551	4.76014636318989	4.84718770568673	4.73004188200029	5.64268162595719	0.0968606998016218	0.801850712873035	0.923559097579232
Merged-chr15-102074437-3	chr15	102074332	102074532	+	929.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145625, intron 1 of 14)	CpG	659.0	NM_145625	75705.0	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	3.80593768885636	3.9774424792339	3.95137098245657	3.75243198871669	3.39860759964374	3.70227427315825	3.88782894914303	3.9489087419581	-0.371233920140701	0.442148124828079	0.728953187628121
Merged-chr15-9435952-4	chr15	9435823	9436023	+	586.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029341)	promoter-TSS (NM_029341)	-105.0	NM_029341	75568.0	Mm.82143	NM_029341	ENSMUSG00000039676	Capsl	1700028N11Rik|AW125205	calcyphosine-like	protein-coding	3.63436056969931	3.299107784496	3.21547083266453	3.52473716992628	3.95922455541393	3.70006265307007	3.71711138106654	3.40987223098714	0.892949507946447	0.0893970395457896	0.32641528543909
Merged-chr2-68242263-4	chr2	68242190	68242390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 16 of 17)	intron (NM_016866, intron 16 of 17)	137618.0	NM_020283	26877.0	Mm.226435	NM_020283	ENSMUSG00000034780	B3galt1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding	6.28201362057194	6.34558655198816	6.28312789034233	6.21135324909551	5.86589768300315	5.97018877362663	5.93222352591873	5.70735770268384	-0.634234959072189	0.00679544675253828	0.059597474667191
Merged-chr9-53007651-4	chr9	53007537	53007737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44B|LTR|ERVK	240475.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	6.01688213470951	5.864098477262	6.2988415888068	5.53023285449921	6.07323255114625	5.71887546364823	6.08735729739064	5.88100070791907	0.0246455810066624	0.931232863115355	0.97526935002018
Merged-chr10-81605192-4	chr10	81605105	81605305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1103.0	NR_030677	268319.0	Mm.131825	NM_001033363	ENSMUSG00000074862	BC025920	-	zinc finger protein pseudogene	pseudo	6.18468800834101	5.85634780210548	5.81867449690765	5.94446883323183	6.08073170992147	6.06772325493885	6.17257210884812	5.95649719056249	0.182671477177354	0.448132475555495	0.733413535306828
Merged-chr5-124049017-4	chr5	124048933	124049133	+	873.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-16773.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	4.47807975755526	4.38841282665394	4.76200616954444	4.85121232796973	4.12555003261783	3.8790801267862	4.04392585671401	4.35095205395566	-1.27577961697046	0.00233368685052664	0.0263429495250196
Merged-chr11-77981857-4	chr11	77981744	77981944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174852)	promoter-TSS (NM_174852)	-972.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	7.32881125839377	7.62230638457151	7.04875414991325	7.20423730175771	7.66743785951369	7.6648195482244	7.48711476305922	7.55449980507673	0.371923237130983	0.0579146954220237	0.252621861469959
Merged-chr10-17989286-4	chr10	17989198	17989398	+	976.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33792.0	NM_001359560	73112.0	Mm.276041	NM_028440	ENSMUSG00000078453	Abracl	1700028I04Rik|3110003A17Rik	ABRA C-terminal like	protein-coding	5.22924621354874	4.96187867739168	5.0276430545293	5.26727965578898	5.4904628342842	5.57658830056554	5.43035099421229	4.86946771374581	0.429507312368442	0.184043479038525	0.48125702884897
Merged-chr5-100656500-4	chr5	100656380	100656580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027978, intron 6 of 6)	intron (NM_027978, intron 6 of 6)	17776.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	8.55862976383367	8.66172906425956	8.46709453026739	8.32939961410548	8.50610265354774	8.63979732169346	8.65846084832518	8.57782002742961	0.112815627149224	0.469795293067937	0.748641260108865
Merged-chr7-108967165-3	chr7	108967035	108967235	+	853.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32720.0	NM_025344	66085.0	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	3.5461621835896	3.31935439292433	3.49242041800718	3.43363520988343	3.35519456936101	3.55058080840639	3.7686278832465	3.59656832377484	0.410179071455011	0.412688157717975	0.707787832411092
Merged-chr14-22019606-7	chr14	22019513	22019713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028275)	promoter-TSS (NM_028275)	-99.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	6.48702777088254	6.94071802305601	6.84896322994507	6.17911801412524	6.40433167197064	6.61295929521557	6.36876703843338	6.24545897282672	-0.332049016553435	0.204334659433661	0.507549249494226
Merged-chr4-3683067-4	chr4	3682971	3683171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	4950.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	7.5233309901225	7.69024873867953	7.62281390752259	7.61527130691127	7.46105391490498	7.56493191299439	7.89470699036645	7.65145851075897	0.0446083755225728	0.80462898286063	0.924901674192736
Merged-chr2-174077349-4	chr2	174077233	174077433	+	941.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102423, intron 1 of 7)	intron (NM_001102423, intron 1 of 7)	282.0	NM_001102423	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	4.47585821107614	4.62147363643202	4.56556235440936	4.80726910236669	4.99157201387839	4.56081729996408	4.74192057519581	5.02578429715063	0.441178216564082	0.216687924280987	0.523384904896548
Merged-chr17-70683957-3	chr17	70683870	70684070	+	758.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360665, intron 9 of 14)	intron (NM_001360665, intron 9 of 14)	122223.0	NM_001128181	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	3.54361850315249	3.50317016236097	3.17970687754059	3.77348488433649	3.31949204805258	3.54799571801353	3.47646268068794	3.69167778477464	-0.0578587137617804	0.914925783587851	0.968364817623525
Merged-chr4-12083436-4	chr4	12083352	12083552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110955, intron 2 of 28)	RodERV21-int|LTR|ERV1	4505.0	NM_177861	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	5.60058719660052	5.66198603682265	5.38851621686118	5.6300493879906	6.15577939033684	5.77900422742265	6.14584015020634	6.04236704206495	0.751054472666773	0.00336952401169074	0.0349824022211399
Merged-chr11-102456056-6	chr11	102455969	102456169	+	817.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010575, intron 27 of 29)	CpG-2677	-8406.0	NM_199200	217219.0	Mm.259924	NM_199200	ENSMUSG00000034685	Fam171a2	-	family with sequence similarity 171, member A2	protein-coding	3.77114146252619	3.87233940911389	3.33543994721329	3.15221466588604	3.40582252803682	3.51514602094404	3.60942302192413	3.67340382378889	-0.0308322695729517	0.955561754092636	0.984226117769221
Merged-chr8-46136516-3	chr8	46136424	46136624	+	847.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-12378.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	3.80021269754985	4.1459255735861	3.99465283714875	3.94487342525379	3.68111084169987	3.62582059030658	4.02064065935366	3.74542385812575	-0.587933554610707	0.201633930309135	0.50415510516587
Merged-chr3-8778896-4	chr3	8778829	8779029	+	663.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111891.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	3.6297958867703	3.39465648715003	3.47194470567439	3.43255958906189	3.19189835078591	3.19627034583301	3.70905806066096	3.812235497693	0.0797407494319306	0.885205679356111	0.956936716928815
Merged-chr16-48992811-8	chr16	48992683	48992883	+	966.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027341, intron 1 of 30)	intron (NM_027341, intron 1 of 30)	1329.0	NM_027341	224170.0	Mm.275138	NM_027341	ENSMUSG00000064061	Dzip3	2310047C04Rik|2A-HUB|6430549P11Rik|A230104G20	DAZ interacting protein 3, zinc finger	protein-coding	3.88372722461319	3.9135738765541	3.98486917311491	3.97954912757515	4.15402225743188	3.95097637191564	4.06025058657234	4.02993696175773	0.302322426979574	0.467028343059312	0.746722908275725
Merged-chr16-90219827-3	chr16	90219736	90219936	+	778.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011434)	promoter-TSS (NM_011434)	-906.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	3.65708314906696	3.58953276769528	3.38869828898069	2.76205091531682	3.62800473284792	3.44444749609521	3.48849901204813	3.60592347471072	0.474696388191622	0.441206033529574	0.728396857622944
Merged-chr3-79173491-4	chr3	79173416	79173616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27641.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	8.9438412755728	9.22398150579054	9.07734220954322	8.67746083210094	8.92932527559377	9.06693948063768	8.93426294769941	8.7794218687727	-0.0758456525503419	0.660331309066916	0.858808351113194
Merged-chr6-148705895-3	chr6	148705806	148706006	+	665.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-27906.0	NR_131024	75831.0	Mm.159595	NR_131024	ENSMUSG00000084909	4930528G23Rik	-	RIKEN cDNA 4930528G23 gene	ncRNA	3.54603885821745	3.26493961708996	3.23655049799549	3.83556246165282	3.78478390695124	3.71761400241951	3.73412228380008	3.54459305000379	0.581400271905652	0.288709146258882	0.600707236957429
Merged-chr19-5843830-5	chr19	5843721	5843921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003513, exon 1 of 1)	non-coding (NR_003513, exon 1 of 1)	1657.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	4.34317632747843	4.35345029496277	4.29810748512922	4.22017743718895	4.64282577904785	4.64289881181256	4.32460669933655	4.50910674037477	0.561451813405775	0.127343489606892	0.397046837212711
Merged-chr7-107597775-4	chr7	107597686	107597886	+	954.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008905, intron 1 of 24)	intron (NM_008905, intron 1 of 24)	2735.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	4.66373899714968	4.77552756958159	4.66448791789689	4.95391440736083	4.81372447994208	4.5362691693196	4.68087631821166	4.35499713289691	-0.3510244484687	0.332596637185744	0.643531688755946
Merged-chr11-118211989-4	chr11	118211907	118212107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	735.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	7.36461362056839	6.96480738145809	8.02000568773924	7.85600919788099	7.29643369007966	7.01180927210484	7.57543619947947	7.01362196128388	-0.495211770474916	0.0640162925223413	0.268748226610458
Merged-chr7-105745038-4	chr7	105744924	105745124	+	896.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020024)	promoter-TSS (NM_020024)	-686.0	NM_020024	24075.0	Mm.274846	NM_020024	ENSMUSG00000043866	Taf10	30kDa|AU041226|TAFII30|Taf2h	TATA-box binding protein associated factor 10	protein-coding	4.28696770984287	4.19080722136489	4.09306583812825	4.10390453375257	4.44704580977823	4.41582752338169	4.68352874787502	4.3721641899057	0.764077077411736	0.0435944617407307	0.212505834285952
Merged-chr3-104780094-3	chr3	104779979	104780179	+	847.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027982)	promoter-TSS (NM_027982)	-977.0	NM_027982	71887.0	Mm.379204	NM_027982	ENSMUSG00000002228	Ppm1j	2310008J22Rik|PP2Czeta|Ppp2cz	protein phosphatase 1J	protein-coding	2.98842538707981	3.2776883344707	3.40961147853764	3.08380541195874	3.30215837018806	3.3581509625616	3.34354015293181	3.24380187233048	0.438401101573892	0.42152840874924	0.714001052191097
Merged-chr14-65112975-4	chr14	65112901	65113101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-14895.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	5.0218549665162	5.25840997037901	5.40143123327326	4.88709199267493	4.63771794601667	5.26195371522787	4.69566999842767	4.91314806627031	-0.50200718470548	0.157613657573562	0.444255436281969
Merged-chr10-70197854-4	chr10	70197753	70197953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6811.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	6.587856268582	6.39330770031762	6.8601898370237	6.85065393973464	6.63732076525843	6.26744251373604	6.83805791034503	6.51894645182968	-0.154243751193304	0.515459810800957	0.777533445789008
Merged-chr9-53376961-4	chr9	53376866	53377066	+	748.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_176846, exon 6 of 6)	exon (NM_176846, exon 6 of 6)	-7057.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	3.58764784584435	3.61816876770368	3.85981910606193	3.64740819690685	3.88333495546608	3.98109426023303	3.98091902039021	3.90555872286861	0.747668975149201	0.0908531937579907	0.329365971820332
Merged-chr13-9834384-4	chr13	9834270	9834470	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_T|LINE|L1	-69049.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	4.64708688589553	4.82990174941457	4.72452407790346	2.77883861174607	4.41203810437697	4.66355674667771	4.50167282787588	5.4610427018394	0.624970730786532	0.644085219251583	0.850082962136934
Merged-chr2-118390240-4	chr2	118390162	118390362	+	907.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177806, intron 1 of 37)	MER46C|DNA|TcMar-Tigger	1150.0	NM_001177806	27103.0	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding	4.42659697678915	4.50883584490288	4.47204596959913	4.66440309392116	4.70383707412801	4.73065053997344	4.8916104118804	4.67364292888913	0.465951809945666	0.182268085706222	0.47878218634963
Merged-chr1-155095921-3	chr1	155095883	155096083	+	856.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010500)	TTS (NM_010500)	3653.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	3.15741240857885	2.94015542391189	3.04582151011799	2.82817263525808	3.08641700287226	2.82064795214477	3.19655558751804	2.85591731544745	0.051152861351244	0.933227921341128	0.975936701173319
Merged-chr9-70839232-4	chr9	70839128	70839328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	95580.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	5.35316431868246	5.39334890374611	5.29496651857807	5.21119121385187	5.35584738694144	5.16702746331254	5.29847432002893	5.35036217673452	-0.0132928058822985	0.962687497167305	0.986696809953945
Merged-chr4-130783120-4	chr4	130783012	130783212	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9425.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	5.66683025820764	6.0256941297994	5.87397765442948	5.45685866954554	5.48029965633703	5.53700942685843	5.42384906827779	5.18666405776698	-0.592747622415371	0.0447346928794593	0.216051750879837
Merged-chr2-4499497-4	chr2	4499399	4499599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-60255.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	5.89953634485195	6.09142678295488	6.06890962575826	6.26503581850739	5.68479814388778	5.52690442034113	5.53989967907128	5.77853741449982	-0.745433940230141	0.00361140507519628	0.0369492887519614
Merged-chr10-81559533-6	chr10	81559452	81559652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_074087, exon 1 of 7)	non-coding (NR_074087, exon 1 of 7)	108.0	NM_001276288	14797.0	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	4.85206793422079	4.73336726275429	4.88803053235534	4.76357041260463	4.73997399898131	4.79459958056905	4.82970702719385	4.95203703861265	0.0466137874242009	0.886035070136419	0.957217228436056
Merged-chr13-48842443-4	chr13	48842347	48842547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011078, intron 1 of 21)	ORR1F|LTR|ERVL-MaLR	28438.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	6.22307745662099	6.26725347109782	5.83878638985957	6.73335517374159	6.00540510807171	6.1431555451742	6.40634616650475	6.54500623269563	-0.055521049880287	0.846410537190052	0.941927981530162
Merged-chr2-51981890-4	chr2	51981803	51982003	+	922.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8695.0	NM_001141948	64685.0	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	4.42697969377309	4.41075427232564	4.61645112078102	4.27275212357731	4.09167319274056	4.17723038661981	4.40725932890626	4.34075085041956	-0.414918444610889	0.291316189875031	0.60362118884242
Merged-chr14-52305106-4	chr14	52305030	52305230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019721)	promoter-TSS (NM_019721)	-6.0	NM_019721	56335.0	Mm.271759	NM_019721	ENSMUSG00000022160	Mettl3	2310024F18Rik|M6A|Spo8	methyltransferase like 3	protein-coding	6.62113009429435	6.79317006224779	6.52322395811439	6.67233083142955	6.77209059283456	6.70037530787754	6.88299850404939	6.82216207707641	0.193432059326466	0.33411458811277	0.644805241742718
Merged-chr19-53310486-4	chr19	53310383	53310583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008542)	promoter-TSS (NM_001008542)	-23.0	NM_001008542	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	6.30113058390081	5.74548442133716	6.13467085226119	6.11780378420769	5.84432224207164	6.16298342995894	6.32084834884067	6.00478053522507	-0.000135824060252315	0.999583258511235	0.999768819585389
Merged-chr10-39520546-3	chr10	39520452	39520652	+	959.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 5 of 13)	intron (NM_001122893, intron 5 of 13)	-92382.0	NM_134000	103213.0	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	3.50952477843981	4.02589550670259	3.50992108167995	4.1892234512313	3.7415572233298	3.81425960461551	4.19057923671364	4.04385106599184	0.275095262980547	0.601282923215135	0.827071740947179
Merged-chr2-174614131-4	chr2	174614034	174614234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29400.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	6.52803395527776	6.27982730689577	6.73760642392496	7.00373166000266	6.51283398867127	6.14812721814606	6.28568829462812	6.38784488347756	-0.484651266065227	0.0555711803237358	0.246756147489906
Merged-chr9-106428854-4	chr9	106428791	106428991	+	911.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324534)	promoter-TSS (NM_001324534)	-520.0	NM_001324533	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	4.12012130992775	4.79849372307879	4.30194518665872	4.51868131172927	5.61404155211077	5.47135962368763	5.03966928433159	5.29572854589138	1.77429254706721	2.51958347189867e-06	8.07480558065175e-05
Merged-chr8-81341790-3	chr8	81341655	81341855	+	704.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001297591)	promoter-TSS (NM_001297591)	-807.0	NM_001024617	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	3.9684884069671	3.90940841044082	3.88103049870059	3.61479583271809	3.51018210394306	3.43310942451836	3.72058360293546	3.57093335003274	-0.869650567527452	0.0771440316162282	0.300335559066428
Merged-chr11-28202324-3	chr11	28202214	28202414	+	724.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	382010.0	NM_001166661	216613.0	Mm.93759	NM_181577	ENSMUSG00000032878	Ccdc85a	-	coiled-coil domain containing 85A	protein-coding	3.38287914382565	3.21127279411243	3.26625853188013	3.43340877169174	3.03570426532455	3.37966539254356	3.57374131506224	3.58747084838329	0.26832485656066	0.62955750260188	0.842301337901528
Merged-chr8-57429415-4	chr8	57429315	57429515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26508.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	6.31424783422105	6.40410170486979	5.88917106444007	6.37550024582683	6.23218057225376	5.96707152596804	5.70654314226622	5.64724857160457	-0.53655583188712	0.0506350099804547	0.23333607134282
Merged-chr10-12955999-3	chr10	12955898	12956098	+	797.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029075, intron 1 of 2)	intron (NM_029075, intron 1 of 2)	8261.0	NM_029075	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	3.97525840769349	4.16412740621242	3.4115167507041	3.64455292039764	4.35644773300467	3.78635131714125	3.76260329561655	3.60522079463993	0.250074169294869	0.645581923963614	0.850934142345746
Merged-chr11-53519296-2	chr11	53519196	53519396	+	889.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252332)	promoter-TSS (NM_001252332)	-440.0	NM_033144	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	3.20813533105029	3.08714988925778	3.1537872772137	3.10170211200955	2.86557122483634	3.01622741139361	2.75878043908163	3.25916655060737	-0.625357918607075	0.304218874549494	0.616887791908108
Merged-chr3-90445626-3	chr3	90445525	90445725	+	661.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-11989.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	3.56766204156091	3.49688936271526	3.19721042093965	3.05628744778671	3.42418166133461	3.10927612201661	3.35579203612704	2.92505257972862	-0.432188741995108	0.47854679475393	0.754562985773559
Merged-chr12-98283295-4	chr12	98283192	98283392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1c|LTR|Gypsy	14657.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	6.79831187334235	6.59985687880776	6.41459751062478	6.5982253236476	6.33158961524706	6.75885356789079	6.69711080398192	6.21584735248785	-0.137864866976046	0.5572972003934	0.802523922820683
Merged-chr19-6331867-4	chr19	6331758	6331958	+	844.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3121.0	NM_001168488	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	3.84618639875956	3.90620471881696	3.84673339086395	3.66950847460958	4.02979081650662	3.7448757478122	3.78014631675409	4.07339091235246	0.317384708321133	0.478121163407774	0.754259447921143
Merged-chr2-91441848-4	chr2	91441770	91441970	+	881.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 1 of 8)	intron (NM_175123, intron 1 of 8)	2844.0	NM_001311144	228356.0	Mm.386861	NM_175123	ENSMUSG00000040591	1110051M20Rik	AI586322	RIKEN cDNA 1110051M20 gene	protein-coding	4.6451099576028	4.10166131968974	4.64588101671234	4.69342328190616	4.25227910603568	4.29801740065578	4.65878355112822	4.31586456327074	-0.362942598425542	0.370232229324939	0.674380322213063
Merged-chr11-61714766-3	chr11	61714666	61714866	+	894.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033227, intron 6 of 15)	intron (NM_001033227, intron 6 of 15)	6033.0	NM_001033227	109342.0	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	3.67096549043992	3.87965524841299	3.61440823798909	3.31572676588849	3.92656092301633	3.73347888618509	4.03607567825865	3.92198035920373	0.849104050374818	0.0781703441013194	0.302437045599886
Merged-chr4-134098824-4	chr4	134098717	134098917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3744.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	7.81045551969379	7.89568509822112	7.64457542899749	7.57313268664546	7.66762163543054	7.7518816881033	7.68932732764061	7.4162516804171	-0.124115504369748	0.493204671454672	0.764078058767225
Merged-chr12-111427920-4	chr12	111427811	111428011	+	918.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 9 of 13)	intron (NM_001289487, intron 9 of 13)	10466.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	4.52595760696042	4.7521770206636	4.2954825159437	4.11200421270664	4.90916730617684	4.74307584939428	4.27703036829658	5.03880980070329	0.734818710783689	0.0730716589144003	0.290925585069253
Merged-chr1-13659105-4	chr1	13658999	13659199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145381, intron 1 of 6)	intron (NM_145381, intron 1 of 6)	1410.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	6.38116926588772	6.23283507424913	6.25639312853302	6.4134989602746	6.33325496073359	6.25016985294537	6.10610933784985	6.04711572077202	-0.201576996703721	0.374871552696951	0.67797297175639
Merged-chr5-54005688-3	chr5	54005572	54005772	+	856.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	7149.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	3.88783658104074	3.69037371503951	3.79052825185026	3.77927794166439	3.56049217289033	3.68648583680662	3.82409953779397	4.01976796350149	-0.0251342237946456	0.956831654287414	0.984757116793997
Merged-chr8-4616251-3	chr8	4616169	4616369	+	781.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145591, intron 1 of 3)	intron (NM_145591, intron 1 of 3)	3099.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	3.24727464718173	3.57965919795617	3.30701999541023	3.46067708819186	3.1345289521925	3.08868758686337	3.59836774175666	3.2460683499818	-0.455900036414601	0.418624469405347	0.711983492809882
Merged-chr6-116124270-3	chr6	116124168	116124368	+	930.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	MT2B2|LTR|ERVL	69106.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	3.91401509743792	3.87786647864668	3.8667377707972	4.07811045764076	3.51921618980179	3.65177228397421	3.98716397680673	3.65328490422139	-0.692909110777081	0.14107498051877	0.417798729724146
Merged-chr3-100409441-4	chr3	100409372	100409572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16933.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	7.66421933961286	7.8286744709989	7.46406099724241	7.458604726012	7.86574623045955	7.994045689108	8.05272637904496	7.52655778449017	0.346480375290027	0.0768924125475868	0.299715677956916
Merged-chr10-8760696-4	chr10	8760529	8760729	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	125441.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.05907574930474	4.82837831884415	4.99713693797783	4.81868747695279	4.78422788909101	5.10260129682407	4.64657938487574	4.43855500095869	-0.323935706413091	0.358822800310641	0.664774807478166
Merged-chr9-21137420-4	chr9	21137326	21137526	+	827.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6151.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	3.85924939673857	3.47774570011808	3.59962981393641	3.58079660231386	3.81488254634923	4.15309979751333	3.4693414547945	3.94787106820348	0.705644312658558	0.153822734416964	0.438762418984475
Merged-chr4-141994190-4	chr4	141994056	141994256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 2 of 31)	GA-rich|Low_complexity|Low_complexity	11164.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	6.3022802951112	5.86830411585893	5.38095885821207	6.13894608405315	6.02092694481179	6.15475263694444	6.01227456417247	5.68380456336489	0.00745573392857468	0.979911528043533	0.992772119265666
Merged-chr3-84155803-4	chr3	84155701	84155901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029797)	promoter-TSS (NM_029797)	-15.0	NM_029797	76915.0	Mm.274829	NM_029797	ENSMUSG00000033752	Mnd1	2610034E18Rik|AI591601|Gaj	meiotic nuclear divisions 1	protein-coding	8.25311480533746	8.60028416325625	8.35947135457176	8.56442788874592	8.03871369628085	7.93632063461333	8.39730543497701	7.97986864780257	-0.451728714937643	0.0129413273761368	0.0947198705713156
Merged-chr2-160375036-4	chr2	160374950	160375150	+	925.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7985.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	4.48669967208112	4.26137897979269	4.48739773853716	4.74636717383359	4.54598605716992	4.74340918872402	4.769964146499	4.64645841500977	0.325638001545169	0.379823879011475	0.682282195090949
Merged-chr17-80291387-4	chr17	80291309	80291509	+	832.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163759)	promoter-TSS (NM_001163759)	-933.0	NM_001163759	106794.0	Mm.12412	NM_198942	ENSMUSG00000035051	Dhx57	AW494914	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	protein-coding	3.82736133562931	3.71637459481503	3.5684943245078	3.79335047642779	3.56904838270277	3.79649689747612	3.49727708422735	3.77785274493483	-0.222252862758566	0.639116299985906	0.847460117673189
Merged-chr3-9833641-4	chr3	9833559	9833759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195031)	promoter-TSS (NM_001195031)	20.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	7.39239947691999	7.50097926947194	7.24864624866289	7.34084821227409	7.41096004020189	7.53085845995156	7.39534904469833	6.9198371478339	-0.0516185977700734	0.797970362958921	0.921916136316856
Merged-chr17-35749994-4	chr17	35749899	35750099	+	924.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22451.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	3.63600431778218	4.25040986255075	4.1267462689085	3.92597873425206	4.53383318252973	4.93439437292415	4.34235661673997	4.66530170381355	1.49028261331508	0.000551516686265027	0.00834887414114384
Merged-chr7-120102893-1	chr7	120102793	120102993	+	647.0	f0_c57.idr	intron (NM_145586, intron 1 of 4)	intron (NM_145586, intron 1 of 4)	467.0	NM_145586	233806.0	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	3.89299915280058	3.6024367916103	3.25330827367316	3.5346768082252	3.66934499728633	4.01645438362079	3.92079946651784	3.84431558691256	0.825178465032722	0.0974377857639624	0.342005234621681
Merged-chr18-49521708-4	chr18	49521615	49521815	+	981.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45-int|LTR|ERVK	-1574.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	5.00723341675074	5.05636592821649	5.27110714903559	5.31406517319749	5.06777909669036	4.94963569685794	5.53291993060097	5.32541654285511	0.107150996735394	0.737419641138198	0.896392006995728
Merged-chr7-3275998-4	chr7	3275876	3276076	+	976.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13062.0	NM_001093764	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	4.90777182727703	4.88487158224927	4.51484597853845	5.25049247085481	5.15509503597845	5.22568231891695	5.45006045177899	5.14574321991863	0.580186977305377	0.0967978205818988	0.340770106705898
Merged-chr15-36794215-3	chr15	36794147	36794347	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011740, exon 1 of 7)	5' UTR (NM_011740, exon 1 of 7)	291.0	NM_011740	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	6.46278583867388	6.33875597520088	6.33846301557056	6.4251475473481	6.59934586578406	6.72202736985542	6.77060638388791	6.25627634466063	0.303376566414276	0.173480528618257	0.467554835199636
Merged-chr11-49728051-3	chr11	49727954	49728154	+	710.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15332.0	NM_212484	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	3.66281407308853	3.8325505752785	3.54766981566014	3.69630276566986	3.66225287369344	4.08133834937797	3.85086933264143	3.66131095079151	0.378386780339544	0.420250012563679	0.713164591938539
Merged-chr5-64718997-4	chr5	64718888	64719088	+	875.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84535.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	4.26851170160453	4.1014759850363	4.72955891751038	5.12606189922258	4.47697669913402	4.67270928618153	4.47830047674619	4.40904065054697	-0.279617917269963	0.529628101930613	0.78577619366598
Merged-chr18-34624903-4	chr18	34624809	34625009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289606)	promoter-TSS (NM_001289606)	-27.0	NM_009004	19348.0	Mm.258846	NM_009004	ENSMUSG00000003779	Kif20a	AA415432|Rab6kifl	kinesin family member 20A	protein-coding	6.54732661022311	6.60853519877224	6.16870264329415	6.12552499002252	6.57286000916675	6.64334764428371	6.25716476592219	6.28486123420088	0.121277396748352	0.623219208806847	0.838922840312846
Merged-chr5-140540283-4	chr5	140540173	140540373	+	780.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24794.0	NM_030022	77998.0	Mm.160040	NM_030022	ENSMUSG00000036586	Grifin	E130101O17Rik	galectin-related inter-fiber protein	protein-coding	3.71472832737941	3.79210478064264	3.48255133025069	3.49014042647907	3.79522851641363	4.03502976759905	3.89520542958512	3.76532973344467	0.756154691936554	0.102016772985708	0.350642323837447
Merged-chr10-98778484-4	chr10	98778409	98778609	+	673.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136133.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	4.30130286163477	4.22505887887927	3.87142048520794	4.32185128018509	4.17669585276421	4.2046002659712	4.11032348167369	3.92478384249256	-0.231223551650775	0.583622469118861	0.817250570112951
Merged-chr19-29431159-4	chr19	29431041	29431241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 2 of 5)	intron (NM_021396, intron 2 of 5)	20222.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	6.96509976276677	7.09718958047114	7.06263299937295	6.75512682566039	6.89488799654355	6.86438902201977	6.86714078367373	6.55071299295101	-0.226645094104708	0.279449855611208	0.591495502480744
Merged-chr16-17233576-4	chr16	17233467	17233667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178922)	promoter-TSS (NM_178922)	-20.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	7.55573082592453	7.31650503524595	7.20880773094176	7.29043349703822	7.44245911035436	7.68973674671461	7.55394711535379	7.16891221575174	0.173011765328391	0.378611864368076	0.681182628403749
Merged-chr3-9711209-3	chr3	9711110	9711310	+	813.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	-101125.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	2.94492013930349	3.2344590285909	3.36453230806505	3.30250117372802	3.00106288004272	3.25235579528382	3.29886793534768	3.14005008414539	-0.196737511590234	0.731259694842536	0.893521944263761
Merged-chr11-21567903-4	chr11	21567804	21568004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316675, intron 1 of 8)	intron (NM_001316675, intron 1 of 8)	4030.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	5.15846221422682	5.06470937634402	5.12697923653512	5.53055839422995	4.94608568124707	4.8860185343317	5.13402678074263	5.36142258443621	-0.300561150477771	0.361050309459966	0.66633478471922
Merged-chr13-73804023-4	chr13	73803928	73804128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 17 of 24)	intron (NM_001360694, intron 17 of 24)	40331.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	8.80261647198421	8.83888249406953	9.02797958637609	9.17204844123001	8.66026964129117	8.5424525687504	8.8570719172042	8.54016303690031	-0.394482935887514	0.0178393445178547	0.118494466539416
Merged-chr3-87015760-3	chr3	87015675	87015875	+	717.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-16435.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	3.87786442938509	3.99871943310288	4.29454891167498	4.31566826375384	3.91160314191369	4.05386384375163	4.10795517929568	3.9809287397628	-0.354942533738618	0.410929063551928	0.706273206869081
Merged-chr12-8432968-5	chr12	8432782	8432982	+	964.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67127.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	3.74384210756345	3.89487634511872	3.89366216151277	3.62627506108532	3.76938284529886	3.75190176513997	3.78041965418163	3.84352777543191	0.00625163460699786	0.988975403222382	0.995581873678262
Merged-chr2-133553459-2	chr2	133553359	133553559	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007553, intron 1 of 2)	CpG	1300.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	3.5441172548428	3.40770112638744	3.64377431453553	3.2752677244653	3.33465234552662	3.49502146873856	3.11334287372794	3.64151380470279	-0.199541675318395	0.713225138472936	0.885280331946177
Merged-chr11-68030839-3	chr11	68030741	68030941	+	724.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018768, intron 6 of 7)	HAL1ME|LINE|L1	64383.0	NM_018768	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	2.82449212327226	3.12074683721946	2.75150769964697	3.2695767858068	2.77321945892914	3.30876387333923	3.12856474866823	3.1392972080995	0.33153113005248	0.618433602815329	0.836000920352511
Merged-chr9-107278737-1	chr9	107278637	107278837	+	598.0	f0_c57.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	10659.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	2.03672257778414	1.99903414345515	2.03686265738772	1.89369263347951	2.58608069623406	2.65141677783503	2.58581746237766	2.47662414995725	4.65026965786882	1.03037311828051e-06	3.60043830074071e-05
Merged-chr3-10249582-4	chr3	10249478	10249678	+	867.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357159, intron 3 of 4)	IAPEY4_LTR|LTR|ERVK	4647.0	NM_001357161	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	4.91406477156909	4.41009209438303	4.44773366322812	4.29773961861289	4.57035708522367	4.48763890717819	4.66257361159515	4.35508730499657	0.00075018901810025	0.998460916105185	0.999317736028615
Merged-chr8-70654316-4	chr8	70654263	70654463	+	847.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023217, intron 2 of 4)	intron (NM_023217, intron 2 of 4)	5375.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	3.75471343632758	3.51822816983336	3.75525173391926	4.112408896031	3.49583929198785	3.58779171637454	3.57909024695841	4.02654082175626	-0.381558129781344	0.460708933450292	0.74271114721283
Merged-chr5-102070023-4	chr5	102069944	102070144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172882)	promoter-TSS (NM_172882)	-123.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	7.42918229008149	7.48261942994661	7.76867466655441	7.4643084805429	7.70593152194439	7.59790246427279	7.71563623910857	7.61861131308722	0.164210912874256	0.348810704538964	0.656478715798452
Merged-chr16-21842330-4	chr16	21842235	21842435	+	949.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47988.0	NR_037957	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	4.73330483217965	4.23598834845613	4.50428098039954	4.48689099374829	4.65711154911543	4.54798625835295	4.30582151610139	4.86343553201798	0.251382657036207	0.509742486211017	0.774189093857689
Merged-chr2-35499134-4	chr2	35499068	35499268	+	794.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37719.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	3.95893404720606	3.71407849972639	3.90776041653177	4.12018584140206	3.94335492352258	4.2282116307118	4.32888637861447	4.05472145865167	0.515233198899444	0.241928582166861	0.552488599341246
Merged-chr10-80175724-3	chr10	80175663	80175863	+	911.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027207)	TTS (NM_027207)	2819.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	3.43472942235946	3.74808827774303	3.54895266546469	2.96548090039145	3.56434489440268	3.35986256272548	3.53431609882502	3.92147085641752	0.503587369753056	0.382644473712386	0.684637549504146
Merged-chr15-99415970-4	chr15	99415863	99416063	+	850.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	22744.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	3.90901986054812	4.26961578313657	3.56104361329574	3.70801641090651	4.23515286136946	4.22472749341081	3.7881153474468	3.95736267726187	0.482593787659141	0.317682842200778	0.629592752581639
Merged-chr1-189792751-4	chr1	189792679	189792879	+	938.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008976, intron 2 of 18)	intron (NM_008976, intron 2 of 18)	64511.0	NM_008976	19250.0	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	4.25176495137312	4.28372067141468	3.92438621222498	4.52666887535371	4.4393860901853	4.68589218703908	4.49383303139624	4.76199878717599	0.713177117232397	0.0816310587462048	0.31005095926063
Merged-chr6-51919193-4	chr6	51919099	51919299	+	875.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018773, intron 6 of 12)	intron (NM_018773, intron 6 of 12)	93350.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	3.78554764804312	4.08317536586215	3.66367382238852	3.53738541071209	4.19666458365828	4.47947233093995	4.07952803553591	4.34629670475011	1.34787256354276	0.00253263599904653	0.0280358472435666
Merged-chr10-128590422-4	chr10	128590328	128590528	+	828.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010153)	promoter-TSS (NM_010153)	-927.0	NM_010153	13867.0	Mm.373043	NM_010153	ENSMUSG00000018166	Erbb3	C76256|Erbb-3|Erbb3r|Her3	erb-b2 receptor tyrosine kinase 3	protein-coding	4.10127936798386	3.76254758935347	4.10192022583407	3.84446871947644	3.79095887680723	3.92790134333592	3.89642909491866	4.2635977358322	0.069832271807493	0.876559760289254	0.953666042700367
Merged-chr13-25791486-4	chr13	25791384	25791584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	174832.0	NR_045062	100503530.0	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	-	predicted gene 11351	ncRNA	7.06403800641359	6.9624279770014	7.33063437437142	7.48932722303152	7.11720352214842	7.15337994237177	7.24345018003663	7.09668918803372	-0.119770063267836	0.560336040536017	0.804393115014757
Merged-chr11-118998778-3	chr11	118998682	118998882	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10601.0	NM_001359574	238011.0	Mm.244114	NM_001030291	ENSMUSG00000046697	Enpp7	Alk-SMase|Gm254	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding	4.01458494309816	3.98088157624894	3.68527791377554	3.32214549604586	3.68876585326395	3.8053120020181	3.50052159031424	3.62839158311818	-0.338948020622433	0.517143400918084	0.778683190795269
Merged-chr15-88101594-2	chr15	88101504	88101704	+	1000.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-213270.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	4.99381086541432	4.69155260285067	4.79608772542623	5.24091976937623	3.13053634857676	3.46383741745603	3.40429783765865	3.41410990455949	-7.71495127843154	5.5402052487176e-13	6.21017747084205e-11
Merged-chr11-101010601-2	chr11	101010483	101010683	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243049, intron 1 of 20)	intron (NM_001243049, intron 1 of 20)	1131.0	NM_001243051	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	2.83144962118963	2.82946620731738	2.94690069130414	2.43285884342796	2.57328608503089	2.51668437577136	2.62937909687683	2.99887223797286	-0.372251496882007	0.602747007423169	0.82782634442766
Merged-chr19-60890209-4	chr19	60890106	60890306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_018869, exon 1 of 16)	5' UTR (NM_018869, exon 1 of 16)	457.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	7.2313126090842	7.44197728142378	7.18815038855124	7.44039288415927	7.12698789738562	6.97164638586914	7.45114192116007	7.08932648640989	-0.223330199866558	0.26177020816889	0.573714987445067
Merged-chr7-132672699-3	chr7	132672612	132672812	+	992.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	62069.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	4.15745390037515	4.31795269679083	4.46616381291062	4.57475820387437	3.21751777611251	3.81561316918161	3.67790315831522	3.5606729552381	-2.49198198038792	2.11323137678669e-06	6.86525313410771e-05
Merged-chr10-59295804-2	chr10	59295704	59295904	+	800.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27492.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	3.00461229262861	2.79202570827327	2.68830260496106	2.72790984447406	2.90165623116715	3.05703359667858	2.87699789408687	2.88592908683345	0.569833212808085	0.348953159361366	0.656628169207238
Merged-chr5-139734325-4	chr5	139734249	139734449	+	945.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	1984.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	5.07694656871212	4.53709960932613	4.93812456855869	5.27795176087368	4.80568312729275	4.91949799883648	5.44410649972957	5.41903723500315	0.336801118284053	0.369377830779636	0.673680696515046
Merged-chr2-13270836-3	chr2	13270727	13270927	+	928.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009105, intron 2 of 8)	intron (NM_009105, intron 2 of 8)	588.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	4.02913586734254	3.95002705368457	4.07581362903391	3.8041139505245	3.86592828205142	4.10467867632413	3.81268021618465	4.27896286158626	0.181540033031627	0.680330619050621	0.868832588154947
Merged-chr13-60650145-4	chr13	60650021	60650221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	47910.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	6.54247865276219	6.07967940523487	6.39996882102312	6.5690481408707	6.16951676099591	6.37461044605339	6.0639249803771	5.82873780821163	-0.444543687916854	0.0779093938058238	0.301827112120482
Merged-chr14-60443941-1	chr14	60443841	60444041	+	758.5	f0_balb.idr	Intergenic	RMER4A|LTR|ERVK	65655.0	NM_001164705	72125.0	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	3.82090550823025	3.83429483261479	3.86946603416339	3.57647686432864	3.82362161070776	3.89123290990068	3.59572930050215	3.60734631872305	-0.0930003972378004	0.843250445150136	0.940459539910433
Merged-chr2-93822539-4	chr2	93822431	93822631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010163)	promoter-TSS (NM_010163)	37.0	NM_010163	14043.0	Mm.4336	NM_010163	ENSMUSG00000027198	Ext2	AI893565	exostoses (multiple) 2	protein-coding	7.07807613906262	6.87558081632415	6.93193823161308	7.15353438267152	6.9390717605857	7.15945716730738	7.00850750067658	6.36139998292434	-0.165950743934849	0.473247099024601	0.751076459932416
Merged-chr9-123863808-4	chr9	123863722	123863922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1793.0	NM_011798	23832.0	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	5.32316607030022	5.33889113990513	5.3546974170814	5.28679732015839	5.66428829144528	5.74853319230566	5.3868015970759	5.35098548545928	0.402622888478722	0.149959310568637	0.432360854406563
Merged-chr13-21453054-2	chr13	21452954	21453154	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347491, intron 1 of 5)	L2a|LINE|L2	673.0	NM_001013786	432731.0	Mm.390557	NM_001013786	ENSMUSG00000022228	Zscan26	BC068174|Zfp187|Znf187	zinc finger and SCAN domain containing 26	protein-coding	3.02910272330537	3.12526959225581	3.19989383693358	3.0773082776235	2.89826809470002	2.93963818437155	3.01879255751201	3.08721437674723	-0.514795033425049	0.37277267728108	0.676473676259602
Merged-chr11-20159137-4	chr11	20159036	20159236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42276.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	6.07767521797619	5.60413708061511	6.05829558908791	6.36989800750132	5.70329589124162	5.82676945234497	6.18137623936195	6.0539578155414	-0.188107727005472	0.510302463134307	0.774671963475449
Merged-chr11-8700960-2	chr11	8700855	8701055	+	690.900024	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36420.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	3.2649103408836	3.36088134708734	3.60081066327494	3.42371495365095	3.96754529765519	3.89238977673597	4.22534067823488	4.24382815412614	1.97541679967876	4.37766734632978e-05	0.00100775544645669
Merged-chr16-30070539-9	chr16	30070450	30070650	+	992.607422	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	5193.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	4.93491555084678	4.89364154826802	4.57804234901254	5.09659092475562	4.92490086754677	5.1415941528468	4.91197528483683	4.78569376975125	0.0768898842997976	0.820756027284949	0.931376536725634
Merged-chr9-82976138-3	chr9	82976039	82976239	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081216)	promoter-TSS (NM_001081216)	-650.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	6.73999183749624	6.93188794158608	6.34993102867075	6.29594023466765	6.91832908633531	6.73709996422256	6.39125986241315	6.28676731539554	0.0218363949184368	0.934544971637709	0.976356212091203
Merged-chr11-59224633-4	chr11	59224515	59224715	+	844.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	3547.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	3.93527084887263	4.0180953396107	3.66485571617255	4.109253732804	3.67709737732963	4.19914517958509	4.09908200510074	3.66299507516341	-0.0678199035246511	0.887548389827414	0.957799052224803
Merged-chr8-83748839-4	chr8	83748729	83748929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7518.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	8.44656847849302	8.45773907218534	8.2552807365602	8.34067024834971	8.29060522845971	8.34919265611655	8.1931589548565	8.0358541913544	-0.19509374588251	0.221973825424358	0.530047563717821
Merged-chr12-86079077-4	chr12	86078981	86079181	+	942.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009368)	promoter-TSS (NM_009368)	-40.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	4.84502869988435	4.49540053864893	4.69803936584197	4.85118992828605	4.66313997936832	4.41723132734713	4.92204535419602	5.03581143482231	0.0921877282662769	0.800368723192326	0.923040237917604
Merged-chr2-4492718-4	chr2	4492630	4492830	+	969.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 4 of 23)	intron (NM_001177843, intron 4 of 23)	-67024.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	4.63898509699284	4.36676461139746	4.56106191237359	4.39109483317517	4.59638365739097	4.42048062370105	4.76051539043235	4.81402550224735	0.381666420896395	0.289708975840873	0.601779997997418
Merged-chr10-120979441-4	chr10	120979337	120979537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081193)	promoter-TSS (NM_001081193)	-107.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	7.25726763786475	7.75208737875095	7.59427130146555	7.44937978602892	7.67344253588816	7.36668532601378	7.80653151393314	7.49000133250866	0.0966773562852704	0.625855694211282	0.840127910575481
Merged-chr11-47275015-2	chr11	47274915	47275115	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 2 of 7)	intron (NM_011891, intron 2 of 7)	104287.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	2.82537426959593	2.99425370149775	3.21114981751161	3.28158401182982	3.06254105718531	3.32303488267985	3.14246458219974	3.20938904033506	0.325733391478518	0.584326640403693	0.817562205564865
Merged-chr13-45002194-4	chr13	45002082	45002282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025772)	promoter-TSS (NM_025772)	-86.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	5.36881976873581	5.45710002037484	5.10794580206555	5.14540485939427	5.44885592580831	5.60128369869916	5.53342642825135	5.53199896624683	0.452657233951519	0.108012681814124	0.362615972007629
Merged-chr17-57279811-4	chr17	57279664	57279864	+	833.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	CT-rich|Low_complexity|Low_complexity	664.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	3.76418839468096	3.71562312854204	4.00438850986312	3.75623274355787	3.95872855464096	3.93637656569642	3.69649183792771	3.70887269280288	0.0755421200369439	0.867735435679878	0.950434211754337
Merged-chr5-105649950-5	chr5	105649873	105650073	+	743.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49996.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	4.39337212338469	3.97273307244968	3.95680699018198	3.90083551090599	4.54833734219557	4.86304052359975	5.12571122131503	5.31824510658626	2.06766455644871	4.11500264985541e-07	1.55303167345736e-05
Merged-chr7-45107223-3	chr7	45107118	45107318	+	870.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3396.0	NM_010189	14132.0	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	3.13385129507935	3.21297985874313	3.07515577787485	3.22178497933946	2.94125076456697	3.12148534455508	3.06437451034737	3.0736480303661	-0.487811782442051	0.388174825686488	0.688870226571057
Merged-chr3-95740274-2	chr3	95740174	95740374	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252653)	promoter-TSS (NM_001252653)	-705.0	NM_001252653	13601.0	Mm.3433	NM_007899	ENSMUSG00000028108	Ecm1	AI663821|p85	extracellular matrix protein 1	protein-coding	4.07136963138354	4.32731877320524	4.29971584095141	4.31502911168653	4.25605719193923	4.14371610584925	4.10345287949144	4.11834167008345	-0.255144252012577	0.521031396124094	0.78111362380667
Merged-chr7-6152413-3	chr7	6152303	6152503	+	825.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	3568.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	2.95869918042952	3.18243308914954	3.07477100969011	3.03763229268797	2.9032175571561	2.71831643617214	2.88753976150253	2.89570890387238	-0.92793923713596	0.131027663130042	0.402938651772802
Merged-chr4-119232813-4	chr4	119232715	119232915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286148)	promoter-TSS (NM_001286148)	-91.0	NM_001012400	230696.0	Mm.473722	NM_001012400	ENSMUSG00000078584	AU022252	AI450326	expressed sequence AU022252	protein-coding	8.6090757565286	8.91031090608052	8.52005218527226	8.52972283079866	8.66628261912809	8.85517112998739	8.72608060068009	8.44384929850018	0.0359504899791402	0.835099143833419	0.937183298750505
Merged-chr3-146658459-4	chr3	146658346	146658546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7129.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	5.6588142570752	5.03793942336591	5.10857529021196	5.6952112145797	5.51262041636433	5.28702664845126	5.50845163988853	5.39578300293577	0.0129021984080368	0.96789216584512	0.988636113441207
Merged-chr4-126197643-4	chr4	126197536	126197736	+	589.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356455, intron 1 of 11)	intron (NM_001356455, intron 1 of 11)	3371.0	NM_001356456	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	3.88197146743956	3.77263800096204	3.72559511834	3.49332009102151	3.82842447430281	4.0047886033186	4.04705399927848	3.97501117188755	0.728011031263972	0.106263872787325	0.359240505270803
Merged-chr6-82844047-4	chr6	82843954	82844154	+	892.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37799.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	3.73331451081592	3.737647433879	3.83861436264636	3.94606523010059	4.10503995893659	3.7366713594122	3.91854766723073	3.78516712416551	0.221841371547405	0.624697920904984	0.839581122865294
Merged-chr1-54250673-4	chr1	54250547	54250747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030025)	promoter-TSS (NM_030025)	-36.0	NM_030025	78016.0	Mm.67455	NM_030025	ENSMUSG00000025983	Ccdc150	4930511H11Rik	coiled-coil domain containing 150	protein-coding	7.55632025793721	7.59811312510008	7.74848710877091	7.73673909797758	7.14789174266094	7.53114609278073	7.72599156585438	7.57901275448082	-0.211485021106024	0.278298187016072	0.590519798885586
Merged-chr6-4798549-4	chr6	4798424	4798624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51218.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	6.83385863557531	6.90618984161336	7.04961162690228	6.53032789323497	7.03793559441989	6.77049119709804	6.65515583914591	6.92300087212191	0.0447814752228372	0.840544069087753	0.939305852792169
Merged-chr8-84723011-4	chr8	84722924	84723124	+	874.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001297601, intron 6 of 8)	intron (NM_001297601, intron 6 of 8)	21567.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	4.51897514611742	3.83586601517504	4.13279534252159	4.27079186257542	4.04577070026327	3.76346274957035	3.92127892673919	4.13023643793456	-0.618119577844834	0.173486432128262	0.467554835199636
Merged-chr8-83742435-4	chr8	83742330	83742530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1119.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	8.09433751557616	7.8076526460073	8.00084514101656	7.71672093554111	7.68500007887136	7.90663857694679	7.75546168875503	7.88530632394029	-0.126858832819842	0.47459810508035	0.751800830585175
Merged-chr4-132757224-4	chr4	132757112	132757312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133888)	promoter-TSS (NM_133888)	-41.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	6.03801358986241	6.64386910360756	5.87749369897873	5.82465024732608	6.1571188220301	6.10317515403118	6.39454511717456	5.77099435620005	-0.0173603947012294	0.953498663712446	0.983444766711298
Merged-chr10-52426096-4	chr10	52425995	52426195	+	885.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030250, intron 1 of 4)	MTD|LTR|ERVL-MaLR	8548.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	4.81295667777695	4.40138919937514	4.55858149389041	4.86447525692929	4.57467015387001	4.41850756180773	4.41162768781221	4.47229402622101	-0.46077214610864	0.21595953224059	0.522387992755032
Merged-chr8-122898505-5	chr8	122898360	122898560	+	890.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 7 of 12)	intron (NM_001081379, intron 7 of 12)	50086.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	3.8751742364756	3.9345702350455	3.65456420875439	4.07347064761716	3.63618745420454	3.9973786883551	3.80837696642245	4.26381135153375	0.107827534512841	0.82132896888261	0.931625680075461
Merged-chr1-152795858-2	chr1	152795758	152795958	+	916.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4295.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	2.76450570800559	2.83706027195723	2.62736154454313	2.5260331574979	2.77952243829776	2.87288134218305	2.93541043932753	3.00117982403178	0.990475359237841	0.116147081822457	0.377075323577067
Merged-chr7-29908222-2	chr7	29908100	29908300	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243908)	promoter-TSS (NM_001243908)	-317.0	NM_001243908	73729.0	Mm.333743	NM_001243908	ENSMUSG00000099689	Zfp383	1110003H10Rik	zinc finger protein 383	protein-coding	4.60539337485342	4.54291891181412	4.19305892364292	4.46074359851277	4.69331068152883	4.61364611712984	4.66016327152696	4.85166392691997	0.540410500008262	0.130705943469426	0.402410609652443
Merged-chr11-117779598-4	chr11	117779494	117779694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_154387)	promoter-TSS (NR_154387)	54.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	7.56877206717709	7.84430192930834	7.92712006974825	7.63903983141224	7.56032315107168	7.42132398707256	7.5329703780013	7.80926512538927	-0.211247422401029	0.255854624296542	0.567467793489678
Merged-chr4-132813701-3	chr4	132813600	132813800	+	784.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17336.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	3.52122761758323	3.19980548298082	3.20226120231146	3.3285178453239	3.4756564309442	3.25052448167126	3.19102102095892	3.00590606274908	-0.249413374784101	0.660636118146794	0.858993383327997
Merged-chr19-56455906-4	chr19	56455765	56455965	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5772.0	NM_001164263	226245.0	Mm.156742	NM_172641	ENSMUSG00000035818	Plekhs1	9930023K05Rik	pleckstrin homology domain containing, family S member 1	protein-coding	4.63575001456819	4.59131483762626	4.59906207754887	4.4635240209335	4.55997115749612	4.42884397701747	4.41725542629584	4.29816305901752	-0.294118576546736	0.420000437626251	0.713030055806495
Merged-chr4-9630695-4	chr4	9630590	9630790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177856, exon 5 of 5)	3' UTR (NM_001177856, exon 5 of 5)	13027.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	7.82277823557112	7.8245764786686	7.76169099935531	8.02241997031583	7.95171162209457	7.63304674046134	8.05171293178288	7.78799734624964	0.00126228174834477	0.994354480726526	0.997969705205021
Merged-chr1-45894380-3	chr1	45894300	45894500	+	993.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31194.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	4.58144330708758	4.68066538462477	5.18928806590178	5.03550328370824	4.16521375639409	4.15952628106614	4.33992405613327	4.69657904105144	-1.20196396255969	0.00292217056169177	0.0313248762666654
Merged-chr15-88515253-4	chr15	88515153	88515353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-85049.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	6.752820803824	6.91225114139182	7.1163159330212	7.38823977381993	7.16480120226323	6.83600024448682	7.28370779741569	7.41035910299287	0.154867512881649	0.504185570244534	0.770626277304553
Merged-chr1-39580961-4	chr1	39580887	39581087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-3640.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	4.84233218746397	4.94530884722141	5.02485599799428	5.35516712625326	5.25691465064702	4.45830647207474	4.78104790257468	5.44769419672241	-0.0335867695069922	0.931574709503086	0.975349664377662
Merged-chr6-115375083-4	chr6	115374986	115375186	+	805.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 1 of 7)	L3|LINE|CR1	12737.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	3.98259612445634	3.59972832947439	3.56873657111873	3.55314644856501	3.91601273346004	3.74756292510636	3.67079012896402	4.22123940335876	0.65903388058322	0.172023205957177	0.465252629537357
Merged-chr5-121721522-3	chr5	121721416	121721616	+	847.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	ID4|SINE|ID	9907.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	3.74742357805414	3.67782458407577	3.54132579564849	3.2388145909585	3.6343535187403	3.54045170825016	3.35013321232426	3.88101033534797	0.190929054769476	0.717245395336874	0.886969736012834
Merged-chr16-88480346-4	chr16	88480245	88480445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26633.0	NM_181490	239931.0	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding	6.61730716274391	6.57786260281603	6.55614687389382	7.03558119885982	6.31300188441946	6.48733293573821	6.33426321052267	6.22528156529663	-0.570294204315022	0.0146344095954431	0.102981971388438
Merged-chr11-121259897-4	chr11	121259772	121259972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080932)	promoter-TSS (NM_001080932)	-115.0	NM_001080932	68837.0	Mm.209750	NM_001080932	ENSMUSG00000039275	Foxk2	1110054H05Rik|5730434B08Rik|6230415M23Rik|ILF|Ilf1	forkhead box K2	protein-coding	7.19104407983747	7.52265366717346	7.1324868675476	7.25149791680262	7.67700515920211	7.70536995358847	7.64987998590231	7.29889005099818	0.412320077287381	0.0342892238092354	0.183013846844449
Merged-chr5-53540023-4	chr5	53539904	53540104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15775.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	5.39820270888812	4.96413948484193	5.72582771747233	6.14865041034015	5.48778275166788	5.4486752922736	5.87406412792586	5.76879948350869	0.00966063566379675	0.978402929567089	0.992358604173043
Merged-chr13-102688362-4	chr13	102688277	102688477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR104_Mam|LTR|Gypsy	-5170.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	7.06415707483951	7.23120874719579	7.47232939312138	7.63837658180522	7.36184301720177	7.37462656291758	7.40771182384598	6.9955580979223	-0.113828696819449	0.594183217491302	0.823372799863983
Merged-chr2-3658033-4	chr2	3657940	3658140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55418.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	7.41995133142619	7.01353697200925	7.21539662328775	7.57541762685105	7.28515469341817	7.20002820924729	7.39383919644879	7.30713608904025	-0.047775667687406	0.813780721261761	0.928107164238675
Merged-chr14-59397151-3	chr14	59397049	59397249	+	658.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001320725, intron 14 of 23)	intron (NM_001320725, intron 14 of 23)	-3637.0	NM_001164289	628705.0	Mm.479244	NM_001164289	ENSMUSG00000091144	Phf11c	EG628705|Gm6907|Phf11	PHD finger protein 11C	protein-coding	3.25854089592809	3.4520462547582	3.19382304917485	3.60469637432433	3.27062222394303	3.65979081476462	3.4236532136109	3.59132710662391	0.299218370898938	0.582074775108707	0.816501953640427
Merged-chr3-106496149-4	chr3	106496047	106496247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001093754, intron 8 of 11)	intron (NM_001093754, intron 8 of 11)	10107.0	NM_028110	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	5.6319181740161	5.64411304698133	5.65807368889644	5.3454731909378	5.28043236421762	5.94940667395991	5.25818449433661	5.70287723585172	0.00841811197153524	0.978113000063988	0.992205923377531
Merged-chr8-3288675-4	chr8	3288528	3288728	+	894.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-9011.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	3.28278046300912	3.4320614176105	3.8446728459204	3.45276251009824	3.29235537262271	3.52030797518922	3.50262575404706	3.40342607100813	-0.293938091155213	0.576990358087297	0.813891082840518
Merged-chr5-16468388-4	chr5	16468295	16468495	+	918.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-85100.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	4.14714230892845	3.65283398624935	4.00342803510801	4.40000363451121	3.87142626838319	3.96373206288553	4.41047663638766	4.35423687426842	0.19770624162888	0.682337965879115	0.869765585685259
Merged-chr15-81044606-4	chr15	81044449	81044649	+	895.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 3 of 13)	intron (NM_001082536, intron 3 of 13)	60498.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	3.98790224884687	3.74338118727957	3.73986179819532	4.03782805342923	3.78729981287333	3.74290367753954	3.72535715222519	4.11449663911153	-0.119037520813816	0.796317764366501	0.921103730429807
Merged-chr10-127289371-4	chr10	127289270	127289470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033072)	promoter-TSS (NM_033072)	-352.0	NM_033072	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	7.31014217507082	7.31573440930614	6.98733527171267	7.33704438102973	7.13770015044225	7.37071151980346	7.07715549173178	7.24360358733368	-0.059872590461194	0.755490245091701	0.903766998124101
Merged-chr5-99632971-4	chr5	99632874	99633074	+	939.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	96086.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	4.39247855677904	4.12919030253256	4.47257258948512	3.89417118678318	4.57201707438249	4.19454596309751	4.1993665840294	4.43059513555994	0.342817412718975	0.418313658632959	0.711847277130999
Merged-chr16-56717527-4	chr16	56717422	56717622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252443)	promoter-TSS (NM_001252443)	-72.0	NM_001357126	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	9.37361918199	9.48253449193849	9.39412470816313	9.51389363543062	9.29602719565852	9.416434226584	9.39886967104379	9.1205441557265	-0.161990649919766	0.257674091283862	0.569489664767248
Merged-chr18-56468048-2	chr18	56467935	56468135	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	35903.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	3.61632861109878	3.09498796524362	3.65977617892914	3.03178328462997	2.99979885310385	3.12842915902695	3.07247646659705	3.01420366046977	-1.24508753954201	0.0453446964862962	0.21802082933959
Merged-chr3-37419756-4	chr3	37419654	37419854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163511)	promoter-TSS (NM_001163511)	-158.0	NM_153561	229228.0	Mm.436967	NM_153561	ENSMUSG00000050174	Nudt6	Asfgf2b	nudix (nucleoside diphosphate linked moiety X)-type motif 6	protein-coding	8.95395394895795	9.30335397781157	9.41361567508403	9.0261737081059	9.33937031769172	9.65665055870397	9.54773267089341	9.21998450975329	0.325542878585643	0.0644541035597036	0.269789981609888
Merged-chr6-119902582-4	chr6	119902467	119902667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011236)	promoter-TSS (NM_011236)	-131.0	NM_001166382	19365.0	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	5.34658606801318	5.57379266178206	5.57373385280325	5.20112590343924	5.71742608520936	5.63996336882955	5.40998985830272	5.40418630068508	0.238766405921093	0.406388049258439	0.70289842445172
Merged-chr1-192939206-4	chr1	192939114	192939314	+	911.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301370, intron 4 of 8)	GA-rich|Low_complexity|Low_complexity	-83462.0	NM_198247	214791.0	Mm.22806	NM_198247	ENSMUSG00000016262	Sertad4	4833404A09|C130018M11Rik	SERTA domain containing 4	protein-coding	3.79526999084761	4.19974118537817	3.97078841876231	4.11663105956166	4.53064966956352	4.3916451644478	4.24489216234502	4.46284621929802	0.919368262109068	0.0243253769926319	0.145757724468267
Merged-chr4-155121400-4	chr4	155121292	155121492	+	889.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356327, intron 10 of 12)	intron (NM_001356327, intron 10 of 12)	34788.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	4.96343216777305	4.79266922069824	5.22196688583893	5.25949365530848	4.32508133779041	4.09056092931618	4.65801072850296	4.36471394492279	-1.51892779885669	7.83746173573026e-05	0.00165065139587514
Merged-chr1-74363688-4	chr1	74363525	74363725	+	882.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033345, intron 4 of 9)	intron (NM_001033345, intron 4 of 9)	1517.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	3.84379659634944	3.82585349523487	4.19815426374746	3.7733938296107	3.63944967040371	3.6788307978123	3.97118541736601	3.94011900110576	-0.289068367323253	0.535255716339257	0.789648104016425
Merged-chr13-89385868-4	chr13	89385782	89385982	+	851.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-154754.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	3.9977262684059	3.74821003780123	3.83513265368393	3.81119165774482	4.4289759585528	4.17409056701918	4.25401355737695	4.49701486090717	1.2978866706653	0.00149142599455098	0.0185786158323669
Merged-chr3-142766369-4	chr3	142766263	142766463	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145546, intron 1 of 6)	intron (NM_145546, intron 1 of 6)	1116.0	NM_145546	229906.0	Mm.271756	NM_145546	ENSMUSG00000028271	Gtf2b	-	general transcription factor IIB	protein-coding	5.21748487320495	5.20434483357005	4.71259865657954	4.86594974327619	5.31411279947507	5.29870962105242	4.77580731199263	5.27297752387827	0.332033698077412	0.326376242529386	0.637923349237677
Merged-chr3-101030772-1	chr3	101030672	101030872	+	798.25	f0_balb.idr	Intergenic	Intergenic	-1277.0	NM_001167906	630146.0	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	3.29845795285384	3.22008966257768	3.67202301491864	3.48676179036186	2.90357852732192	3.03475857550372	2.98517981583821	2.77184696367175	-2.1573006918759	0.000852529476134781	0.0118381185294182
Merged-chr3-88335907-1	chr3	88335807	88336007	+	890.6666869999999	f0_balb.idr	promoter-TSS (NM_178246)	promoter-TSS (NM_178246)	-353.0	NM_178246	229512.0	Mm.439830	NM_173188	ENSMUSG00000001415	Smg5	BC024683|mKIAA1089	Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	4.19816123329837	4.58096859114382	4.00980840723455	3.90580252895213	3.90593903347995	4.13424569490663	4.04234211945303	4.10526213114842	-0.387318750019353	0.387114229705896	0.688085997159096
Merged-chr11-90232757-2	chr11	90232657	90232857	+	878.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16719.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	2.8590026939421	2.53887538711468	2.85945859839288	2.33330860855478	2.65917474875853	2.37446132615185	2.48942916660816	2.27040530293618	-1.08160263987101	0.175256092385968	0.469939853077447
Merged-chr2-168578225-3	chr2	168578135	168578335	+	869.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	12130.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	4.87481118542562	4.37146204362217	4.57529533951531	5.02345208819303	3.75680543287138	4.02491195334699	4.16307080896514	4.32333753197507	-1.62031738536249	0.000227479922366518	0.0040479483485316
Merged-chr7-19845294-4	chr7	19845206	19845406	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6697.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	5.49389794739253	5.49357718690771	5.11142030325975	5.33509814038598	5.30900598772683	5.0254592921692	5.01653570419898	5.26930712487778	-0.359498421636135	0.236170603644716	0.546181928547248
Merged-chr18-46535361-4	chr18	46535245	46535445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9374.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	6.1713864643048	5.7621062527787	6.37164368875394	6.37411928764837	6.38622967688316	6.2251813118131	6.17924261201148	5.54908498400162	-0.105063229547305	0.719141884131649	0.887785782541509
Merged-chr5-125270799-3	chr5	125270694	125270894	+	831.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70300.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	4.00319171353648	3.61159265749194	3.85725701244178	3.47059293251352	4.04505562015569	4.34377939263352	3.84098518205134	3.85498221111141	0.835702462501217	0.0787455388826344	0.303647473434478
Merged-chr7-19228767-4	chr7	19228669	19228869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207525, intron 1 of 1)	CpG	380.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	8.5593452825762	8.85121982905538	8.63991286155314	8.6087034094046	8.73261418839147	8.87510735629623	8.87113543395342	8.55523185767075	0.118409728099482	0.458664325638127	0.741460971465473
Merged-chr17-31855167-3	chr17	31855059	31855259	+	871.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_010831, intron 1 of 13)	CpG-6228	645.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	3.53146663581872	3.19389482040355	3.16240216165455	3.44837084359161	3.54827328771048	3.59369395411113	3.51759146245289	3.89927092071314	0.969678634375583	0.0656277249633144	0.272777567016862
Merged-chr19-6869606-4	chr19	6869483	6869683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-11372.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	7.21106354488101	7.40557446527904	6.72210249009167	7.21032995029626	7.025264344759	7.25386197636614	6.99313570521531	6.60192285113525	-0.242771503988701	0.300843558711032	0.612749124831675
Merged-chr3-96152081-3	chr3	96151977	96152177	+	808.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025613, intron 10 of 12)	intron (NM_001025613, intron 10 of 12)	-9893.0	NM_181409	194126.0	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	4.26400432339958	4.08247335673093	4.41890274685827	3.89653619471021	3.97137710004258	3.7649851704919	4.07101403716235	4.17716510730904	-0.426268285078731	0.339534268692995	0.648774648981312
Merged-chr1-58669864-4	chr1	58669737	58669937	+	935.1375119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347056, intron 7 of 13)	intron (NM_001347056, intron 7 of 13)	17196.0	NR_045007	100504501.0	Mm.440933	NR_045007	ENSMUSG00000102059	Gm20257	-	caspase 8 pseudogene	pseudo	4.37022555170273	4.67243647294948	4.83403140608681	4.26158680717536	4.61966657775435	4.54706273381272	4.39691729274187	4.62044299211505	0.0235762648399955	0.951065232405856	0.982556219406068
Merged-chr8-120487112-4	chr8	120487014	120487214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1752.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	6.05398665874447	6.60705078662569	6.16197651455346	5.93674421127935	6.40770964764121	6.5786813944189	6.19016175156441	6.17789419415564	0.210272002919009	0.422833755700238	0.714924316998129
Merged-chr15-78863317-3	chr15	78863201	78863401	+	949.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-7772.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	4.03469894858929	3.90581731167841	3.99045197903835	3.9233624230733	3.63968486130839	3.96714445724713	3.34740028867101	4.07603952247406	-0.508763690385277	0.305192518289223	0.617661724201953
Merged-chr2-84541636-4	chr2	84541557	84541757	+	870.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34784.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	4.13601570494992	4.53002936968858	4.28356443059191	4.80959110678732	4.52099132165774	4.2622127852383	4.31002768161129	4.28097206303929	-0.30763130425816	0.460618637021218	0.742687499720882
Merged-chr3-146685234-4	chr3	146685105	146685305	+	880.761902	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-33888.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	3.55612109044051	3.27653904020786	3.20609516758914	3.36821431786726	3.5225132520928	3.67347264182991	3.49022291169318	3.50240355157672	0.636771121171365	0.206963451546767	0.511041109865179
Merged-chr3-69560145-4	chr3	69560061	69560261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38799.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	8.06918051155282	7.73083310802979	8.0323087405739	8.26422292742383	7.75469376191191	7.70756429235195	7.91396711412111	7.55313564857912	-0.395242917482018	0.0368623425528233	0.191226928107821
Merged-chr12-40521994-2	chr12	40521894	40522094	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	75941.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	3.38455528644978	3.31930428926802	3.6909769824418	3.75662803270487	3.59096789633926	3.3762039641333	3.25350401186189	3.13037919316041	-0.68093220088761	0.227483448854991	0.536124905835687
Merged-chr10-7681573-4	chr10	7681470	7681670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033219)	promoter-TSS (NR_033219)	361.0	NM_010690	16798.0	Mm.34083	NM_010690	ENSMUSG00000040021	Lats1	AW208599	large tumor suppressor	protein-coding	5.14177980210124	5.46860211461837	5.86889093294379	5.35377769049625	5.49224775417209	5.32204538446393	5.75479375174409	5.40042503993517	0.0449607169233942	0.883858476727646	0.956344438085205
Merged-chr2-50888111-3	chr2	50888019	50888219	+	697.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-21565.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	3.70016563858676	3.4129746491584	4.1325228538573	4.05792958619038	3.37491581511208	3.46413963249103	3.52286571252528	3.53436018851311	-1.23285774661212	0.020395762719438	0.129701598731965
Merged-chr4-55476410-2	chr4	55476316	55476516	+	952.083374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	56059.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.41175300008544	4.84725818555599	4.72079067917454	4.95397281522848	3.14741443633801	3.39796186672921	3.4212434893986	3.35169159054551	-6.15247421309524	4.6375476203906e-10	3.16487058553962e-08
Merged-chr13-21279731-3	chr13	21279611	21279811	+	858.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Arg-CGA|tRNA|tRNA	12975.0	NM_010343	14780.0	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	4.10029079255233	4.21759652276805	4.0590448606216	3.78335179788522	3.9690488946096	3.45261010990907	3.52867826913397	3.53923150860827	-1.14036873535695	0.0281098081391944	0.160477063966933
Merged-chr11-3167564-4	chr11	3167502	3167702	+	950.05835	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 7 of 32)	RLTR21|LTR|ERVK	25861.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.42138380321216	5.47191576586917	5.73921566152269	5.28219213755725	3.96768022701923	4.20200401933075	4.28862141346692	4.18878967427783	-2.96174169455097	1.65563762927612e-13	2.0674847511271e-11
Merged-chr10-60741699-3	chr10	60741599	60741799	+	796.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	11083.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	4.14677863073033	3.89114559279322	3.84095200993953	3.58797578166501	3.48963284705306	3.8586543798466	3.91874092135079	3.50220796572732	-0.505038370907263	0.314428819562223	0.626384801220807
Merged-chr5-64296575-4	chr5	64296450	64296650	+	903.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	66193.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	5.08565152103886	4.90773950625684	5.36202589522007	5.43877995337542	4.62396082873135	4.54700409736842	4.62812113565279	4.46117013895001	-1.33974073497269	0.000138895516419532	0.00267562759491905
Merged-chr9-119335079-4	chr9	119334993	119335193	+	878.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010851)	TTS (NM_010851)	4947.0	NM_010851	17874.0	Mm.213003	NM_010851	ENSMUSG00000032508	Myd88	-	myeloid differentiation primary response gene 88	protein-coding	3.52357579934412	3.41394693083115	4.23547529837564	3.79802844588989	4.06295775975841	4.14870455396707	3.80831819800864	4.27100324022504	0.818046346251858	0.108813577421988	0.364122120601742
Merged-chr15-68077556-3	chr15	68077447	68077647	+	877.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	181309.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	3.73981974758703	3.79386029643959	3.78886082637495	3.42069405789614	3.33021999429946	3.64309286885349	3.67455065213779	3.68781638789275	-0.31406821854359	0.533914699295139	0.789042708189764
Merged-chr9-100415469-3	chr9	100415357	100415557	+	945.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71016.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	4.04628779641709	4.61088787057184	4.844729092653	5.31896014425259	3.74584648708963	3.57060216441193	3.72842172985103	4.24742097462983	-2.33591524024836	0.00651980065815598	0.057742054379356
Merged-chr1-13978863-4	chr1	13978744	13978944	+	945.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-191915.0	NR_004447	433273.0	Mm.304088	NR_004447	ENSMUSG00000097711	Gm5523	EG433273	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	4.63520420264085	4.58272715879861	4.67678287416667	4.86840827057349	5.07262688560495	4.72665289027176	4.84009979128155	4.78887832036836	0.338597861494133	0.323901598532159	0.635387963170033
Merged-chr2-22722010-4	chr2	22721908	22722108	+	921.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52319.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	4.46970023073229	4.88085273348302	4.27829895503533	4.49763328337886	4.90163340337279	4.60170184489111	4.76277257482717	4.67341784910758	0.415979463476993	0.25938506517028	0.571231383736746
Merged-chr16-44778948-4	chr16	44778844	44779044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	13208.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	6.20834023434165	6.2858155325859	6.37628367511634	6.73076655841934	6.35926714575914	5.97109127456643	6.21649639723703	6.12317379537612	-0.376525665981942	0.13307519912421	0.40621663944001
Merged-chr12-75670552-2	chr12	75670452	75670652	+	999.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	-1015.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	3.93705186388403	3.25225754473211	3.31012535201079	3.25850950289303	3.18665491478173	3.42601017317691	3.3580103773222	3.63615217341909	-0.196158688207623	0.732246398065548	0.893952343664963
Merged-chr17-74458500-2	chr17	74458400	74458600	+	855.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 1 of 8)	intron (NM_001033367, intron 1 of 8)	608.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	3.06357088014537	3.39668143571449	3.63339623109204	3.19392160675148	3.24919610288607	3.55052345140969	3.42047284135105	3.32033449985114	0.184807278521955	0.737635713134113	0.896392006995728
Merged-chr9-107872300-2	chr9	107872200	107872400	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029169, intron 1 of 20)	intron (NM_029169, intron 1 of 20)	519.0	NM_011251	19654.0	Mm.139926	NM_011251	ENSMUSG00000032582	Rbm6	4930506F14Rik|Def-3|NY-LU-12|g16|mKIAA4015	RNA binding motif protein 6	protein-coding	4.29162932248432	3.94859361975299	4.00929991730543	4.04817201672349	4.39126430952	4.54276378558419	4.04396838052644	4.24657341523635	0.605240007520208	0.140118219470485	0.4161857262431
Merged-chr10-67538248-3	chr10	67538170	67538370	+	873.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010118, exon 1 of 2)	exon (NM_010118, exon 1 of 2)	340.0	NM_001347458	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	3.25144650346396	3.42582231991139	3.31054965478067	3.38655055352606	3.4172092161723	3.36286642233524	3.35374866160633	3.18890936760402	-0.044968420469144	0.931231090327389	0.97526935002018
Merged-chr12-100319929-3	chr12	100319799	100319999	+	806.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 19 of 19)	intron (NM_001033213, intron 19 of 19)	43290.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	3.52783877634192	3.43733960804091	3.52834809467767	3.71423402119345	3.0736674073422	3.41876252870096	3.16832000513941	3.41990290348349	-1.04531855518092	0.055193672303251	0.245631511871521
Merged-chr8-92858694-3	chr8	92858593	92858793	+	785.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357375, intron 1 of 12)	intron (NM_001357375, intron 1 of 12)	3360.0	NM_001357374	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	3.53570113172716	3.43107242336844	3.4867576421214	4.00027485205447	2.84285378057703	2.96274678762155	3.131188719392	2.85040121367464	-3.03007330528579	1.64408867281875e-05	0.000429921335938889
Merged-chr6-52471764-4	chr6	52471645	52471845	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20706.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	4.6703743264324	4.88694114405652	4.81851639346472	4.8196551166245	4.78611259350208	4.63602294021385	4.6101069059436	4.31091812987969	-0.419651755623544	0.237250055137943	0.547433275241948
Merged-chr13-20099710-4	chr13	20099603	20099803	+	799.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	9196.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	4.41635291622782	4.06843131497968	4.61201397160076	4.92987067856028	4.29364091415759	4.03307156752279	4.51617207189693	4.28132300718403	-0.615240178187425	0.161752323586024	0.450749199196011
Merged-chr12-79123018-4	chr12	79122908	79123108	+	954.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7780.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	4.80290226697451	4.77983581829715	4.46987421488394	4.85120726379511	4.91993645615937	4.64890792930136	4.8856557682567	5.00348268692616	0.265108557216795	0.437036307553039	0.725451385050576
Merged-chr10-51498517-4	chr10	51498411	51498611	+	912.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	7613.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	4.54043738780068	4.82654332514664	4.27149836379424	4.5422939230863	4.34416342267871	4.54344586806363	4.47942759489143	4.72608834959686	-0.0863484348898497	0.819831801633664	0.931038192981049
Merged-chr12-55820415-3	chr12	55820296	55820496	+	893.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003719, intron 1 of 39)	intron (NM_001003719, intron 1 of 39)	1120.0	NM_019994	56784.0	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	3.64367748864502	3.50232303614821	4.07999138167654	3.57451684323993	3.16673670616209	3.71038653167664	3.52174043995725	3.35275985809266	-0.870191835100639	0.112445939395423	0.37073461115507
Merged-chr14-20737443-4	chr14	20737345	20737545	+	881.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039138, exon 19 of 20)	exon (NM_001039138, exon 19 of 20)	-2883.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	4.85521377520166	4.45084081149694	4.46221579692061	4.27164624635278	4.48571987682008	4.5049437863225	4.35583747713956	4.37255562040247	-0.18346285158869	0.636218748634271	0.846064411527807
Merged-chr3-90085560-4	chr3	90085537	90085737	+	949.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357581, intron 1 of 8)	intron (NM_001357581, intron 1 of 8)	6116.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	4.73460381615116	4.45927872124827	4.29113870885075	4.49004596776945	4.45233576324377	4.79847477857275	4.36475313152024	4.28856224354989	-0.0328317896896859	0.931908462091748	0.975397745055384
Merged-chr16-85114881-3	chr16	85114780	85114980	+	951.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 2 of 15)	intron (NM_001198825, intron 2 of 15)	58827.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	4.12895547580821	4.16701989686816	4.35208554165336	4.82287971622653	4.07693161022073	4.04254806823074	3.90421094073537	4.26498763635328	-0.845962548634408	0.0596879056392129	0.257595673042717
Merged-chr1-9859156-4	chr1	9859060	9859260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037759, intron 1 of 16)	intron (NM_001037759, intron 1 of 16)	10879.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	6.64426297334777	6.55380635848292	6.58398700527886	6.77977544922655	6.75488848152587	6.19776425543756	6.55037178978365	6.37468621652064	-0.218204040236554	0.340649869893375	0.649743209420133
Merged-chr6-116818915-3	chr6	116818814	116819014	+	807.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102156.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	3.60197589568935	3.69527701932469	3.48699023395784	3.72907121327266	3.60704620480315	3.47483763980302	3.64189630524118	4.05832637628578	0.230177627186964	0.64270889625095	0.849327332982684
Merged-chr8-72325593-3	chr8	72325429	72325629	+	830.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6467.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	4.3926637056752	4.200313268438	3.84339049775961	4.23153653708482	4.21833944265725	4.1780867463526	4.08394805428935	3.65879963180002	-0.32420840009012	0.476966678995507	0.753241702412926
Merged-chr9-64281576-4	chr9	64281456	64281656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324557)	promoter-TSS (NM_001324557)	-29.0	NM_025372	66131.0	Mm.196219	NM_025372	ENSMUSG00000032397	Tipin	1110005A05Rik|1110018P21Rik	timeless interacting protein	protein-coding	6.85257642945284	7.19875614376031	6.43275092201175	6.58835297992433	7.1924844729952	7.13588638058399	6.71907778909141	7.08641982600092	0.347487925047239	0.154486211787318	0.439801241388062
Merged-chr6-116140975-4	chr6	116140852	116141052	+	918.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 1 of 5)	intron (NM_177412, intron 1 of 5)	52422.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	3.91635132445206	3.62928395301889	3.50498353843731	3.69167662900461	3.90029383681493	3.99358375126311	3.4312916558934	3.44137967063109	0.0835141376226156	0.870946801611457	0.951515750732959
Merged-chr13-10220714-3	chr13	10220615	10220815	+	901.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 2 of 4)	intron (NM_033269, intron 2 of 4)	140088.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	3.61959050367682	3.33745758093691	3.72544385060683	3.91782434670044	3.93923725363166	3.62065203302015	3.65917780520652	3.67178826543142	0.168913719188231	0.740047460186964	0.897683586969888
Merged-chr4-125146361-4	chr4	125146260	125146460	+	900.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18479.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	4.40459874327227	4.72140804639893	4.69057126464552	3.94435878040312	4.4929543205611	4.82594046340069	4.1914467339667	4.91990818401085	0.366799870385887	0.404114878401614	0.701304237921607
Merged-chr9-30448630-4	chr9	30448543	30448743	+	889.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028874, intron 8 of 10)	intron (NM_028874, intron 8 of 10)	21314.0	NM_028874	102607.0	Mm.35084	NM_028874	ENSMUSG00000031993	Snx19	3526401K03Rik|AI195321|AI848208|mKIAA0254	sorting nexin 19	protein-coding	3.63693014329403	3.97405831889757	3.86593896381609	4.31367684254722	4.11682923267773	3.75541309698883	3.8504352407077	4.22611275363744	0.0434289278750967	0.929139965862526	0.974317157505369
Merged-chr19-8018787-4	chr19	8018684	8018884	+	730.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR50A|LTR|ERVK	-52757.0	NM_001361980	171405.0	Mm.326517	NM_134256	ENSMUSG00000067656	Slc22a27	OAT6-L|OAT6-S|Oat9	solute carrier family 22, member 27	protein-coding	4.19458384932556	4.58022867545897	4.10347580471931	3.69625840410334	4.06036176103945	4.36691123625959	3.98783084031327	3.83920258336218	-0.259774511772133	0.589882936103195	0.820608949476005
Merged-chr9-104663667-3	chr9	104663570	104663770	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	94187.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	6.60461829916793	5.68749036649239	5.91519008368182	6.59478600079446	3.84013026010092	4.36384632667723	4.26093628373575	4.07468133326481	-4.7028580173701	6.46565778642073e-22	2.7558027280218e-19
Merged-chr5-124075736-3	chr5	124075642	124075842	+	758.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019875, intron 9 of 11)	intron (NM_019875, intron 9 of 11)	20056.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	3.71418737586961	3.69646617431328	3.47907270823772	3.41276228404573	3.06090908229665	3.01382859771826	3.04503253811903	3.31146923205874	-1.78960352641805	0.00237433580255556	0.0266692201499293
Merged-chr16-4877367-4	chr16	4877277	4877477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145359, intron 1 of 2)	intron (NM_145359, intron 1 of 2)	2474.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	6.94161539379519	6.71224036987571	6.5702076468719	6.98398345791242	7.08366624155128	6.73130476859307	7.18324675640472	7.244994714767	0.354878283029777	0.104339560798838	0.35519563815106
Merged-chr2-125667300-3	chr2	125667197	125667397	+	957.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199022, intron 5 of 11)	intron (NM_199022, intron 5 of 11)	-5803.0	NM_025613	58521.0	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	4.27181177192724	4.20780014175602	4.27247660418345	4.63920517581641	3.78778572541831	4.15782374205111	4.45266822576626	4.0307714156376	-0.61995561775495	0.161594883386499	0.450499851346061
Merged-chr6-88903919-4	chr6	88903818	88904018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011906, intron 1 of 11)	intron (NM_011906, intron 1 of 11)	1667.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	6.14021450673267	6.47495216485768	6.28320903879996	6.68542109992099	6.48926229999811	6.40117160969866	6.02166175943089	6.56839035733149	-0.0594115611315001	0.813832853172381	0.928107164238675
Merged-chr12-111671684-4	chr12	111671618	111671818	+	988.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021273, intron 2 of 7)	CpG-3541	620.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	4.181972743825	4.87383621719295	4.82007161420297	4.01645562986764	4.88732859217823	4.4184623999838	4.49808631679354	4.84975571217587	0.348005134255899	0.428987935045045	0.719942758790259
Merged-chr18-67698668-4	chr18	67698582	67698782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008977, intron 2 of 9)	intron (NM_008977, intron 2 of 9)	25939.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	5.21355891732613	5.51057039177741	5.37493235131304	5.58652445200005	5.5427624660691	5.48908216004896	5.37790139626381	5.71241527688763	0.159093174645192	0.573519012421838	0.811888602285473
Merged-chr15-6565374-4	chr15	6565269	6565469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14478.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	7.17528816082296	7.37172691456476	7.17653217077521	7.15861341557525	6.94683040851582	7.05628193559527	7.00102968895454	6.7568136149179	-0.382329014221117	0.0453534164493594	0.218033961194715
Merged-chr13-34082742-4	chr13	34082669	34082869	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-4761.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	5.77188066817052	6.88091446386962	6.17981084088675	4.98001990377171	5.82877093775512	6.24102290623005	5.55442940919612	5.24950387761706	-0.583324540333145	0.378294945948538	0.680900730731587
Merged-chr11-76399134-4	chr11	76399046	76399246	+	996.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008750)	promoter-TSS (NM_008750)	-5.0	NM_008750	18230.0	Mm.27915	NM_008750	ENSMUSG00000020844	Nxn	l11Jus13	nucleoredoxin	protein-coding	5.30638942329875	5.29419091018474	5.21327361710014	5.17975878791214	5.4825360450782	5.53872810519246	5.47515149116631	5.14337052830774	0.319325326171356	0.264445147802835	0.576455127446606
Merged-chr2-38514611-4	chr2	38514520	38514720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159631, intron 1 of 9)	intron (NM_001159631, intron 1 of 9)	2744.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	6.8934055330971	7.0129529367878	6.867968259564	7.16459382125085	6.66845879142543	6.96114284245513	6.64542862820012	6.64303137179513	-0.380033062766438	0.0656104284867521	0.272737527843166
Merged-chr9-111501863-2	chr9	111501749	111501949	+	735.375	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	62768.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	3.6482603229097	3.52878620783397	3.6024275600748	4.02679541219437	2.74946032377775	2.97423403684507	2.93226869668253	2.93913753874378	-4.15128859526108	8.72945144325642e-07	3.0943905591611e-05
Merged-chr1-167284881-3	chr1	167284775	167284975	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030724, exon 1 of 7)	5' UTR (NM_030724, exon 1 of 7)	252.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	3.77857459333351	3.82074398637772	3.68045820758145	3.48230583232309	3.3226046849196	3.44433209025788	3.7147712277476	3.72852377300567	-0.414080746298856	0.414687494820704	0.70914229032969
Merged-chr2-30134629-4	chr2	30134536	30134736	+	884.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146252, intron 1 of 11)	intron (NM_146252, intron 1 of 11)	890.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	3.87267598760577	4.36002216733857	3.69846672848701	4.30809754143342	4.03572396351559	3.9381140747336	4.10294592709167	4.162781657875	-0.108648939212328	0.814121077508001	0.9282722611723
Merged-chr4-108461750-4	chr4	108461661	108461861	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175472, intron 2 of 30)	intron (NM_175472, intron 2 of 30)	2335.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	5.56620007945448	5.05662803693581	4.96224285240096	5.4350308761266	5.49876086532183	5.21467907444648	5.43956720099169	4.83775473855647	-0.00861927777603125	0.979852939238642	0.992764484706202
Merged-chr11-115705716-4	chr11	115705622	115705822	+	758.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008163, intron 1 of 5)	RMER15|LTR|ERVL	2875.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	3.18421605254183	3.3188159463384	2.91884408590539	3.34351774083508	3.45753801955924	3.23234330094129	3.23148755143861	3.29792628318042	0.36954182476049	0.5158744212458	0.777831066095903
Merged-chr7-44955857-2	chr7	44955757	44955957	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077591, intron 8 of 10)	B2_Mm2|SINE|B2	12617.0	NM_011651	22116.0	Mm.84502	NM_011651	ENSMUSG00000059891	Tsks	Stk22s1|Tssks1	testis-specific serine kinase substrate	protein-coding	3.41030672285777	3.08111495880125	2.91460095101125	3.08264487586012	3.48944855299832	3.23452227595104	3.29017921322396	3.50778258025904	0.945201681555193	0.0919517622516371	0.331623169614429
Merged-chr15-101308999-3	chr15	101308897	101309097	+	696.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15785.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	3.05621551771219	2.95832347905423	3.17202055543147	3.1787014218399	3.2077483318718	3.16534276688271	2.92100820695278	2.99336914159359	-0.0673689345249289	0.907380134456749	0.96568164776089
Merged-chr4-95385871-2	chr4	95385771	95385971	+	564.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-171636.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	3.31110131231186	2.98214801591408	3.19944229073957	3.20300345502791	2.95982789475589	3.31182660745511	3.24390965359386	3.30967267855542	0.112433381907633	0.842574169334054	0.940251336238462
Merged-chr8-105161377-1	chr8	105161277	105161477	+	637.0	f0_balb.idr	Intergenic	URR1B|DNA|hAT-Charlie	-9297.0	NM_001161457	12400.0	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	3.08951162924297	3.31310150670486	3.45969183178951	3.28375024952604	2.8756660749518	3.07034571579648	2.88397886511441	3.02573168293897	-1.38616168597612	0.0210858240502004	0.132644089268159
Merged-chr14-61698907-3	chr14	61698817	61699017	+	894.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16544.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	3.94950288510706	4.02081987021426	4.12603340001868	4.21818945285637	3.61483049543141	3.48172436613547	3.55662067176918	3.99396020650807	-1.20151524533773	0.0125435152135528	0.0926465569560518
Merged-chr19-16110791-4	chr19	16110641	16110841	+	802.674988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22090.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	3.78841379429882	4.41094945242039	3.9700259079838	3.59100085018321	4.61747541497766	4.98452310873312	4.00841551884501	4.43948991886701	1.3911574232617	0.00435346170021181	0.0428359207021533
Merged-chr1-165724395-4	chr1	165724276	165724476	+	880.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-16282.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	4.67276350489909	4.66241681413462	4.67352077763918	4.94674884472949	4.68289084855432	4.35276976039737	4.40383639286108	4.63203572778345	-0.486171933268523	0.182353638781581	0.478833867814002
Merged-chr6-124919867-4	chr6	124919751	124919951	+	879.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152158, intron 1 of 1)	intron (NR_152158, intron 1 of 1)	-1905.0	NM_026988	69202.0	Mm.142187	NM_026988	ENSMUSG00000030122	Ptms	2610009E16Rik	parathymosin	protein-coding	4.67525441232588	4.53205959006882	4.19700631010374	3.93948225029271	4.83587055058125	4.65423955728001	4.45920256319329	4.70866944353476	0.724413684082144	0.0760210942839601	0.297838946738032
Merged-chr16-58686324-3	chr16	58686230	58686430	+	804.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16122.0	NM_007757	12892.0	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	4.38213552689316	4.26656422703142	4.60925968526248	4.35065796842267	3.73196776192086	4.28544922946312	3.87120121391039	4.64008410900663	-0.552032430779468	0.237166956105066	0.547312500603115
Merged-chr17-13544206-4	chr17	13544125	13544325	+	983.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045436, intron 2 of 4)	RLTR11B|LTR|ERVK	9869.0	NR_045436	72578.0	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA	4.74502334747554	4.73116046106185	5.19128211206306	5.15043144133189	5.01590907385536	5.39586895732679	5.39281227516	5.58718887834943	0.691981764652355	0.0400480706244152	0.201902803343861
Merged-chr4-145234057-4	chr4	145233992	145234192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	12778.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	7.40856905198297	7.72735440908733	7.73947178864814	7.62068527573929	7.44545684861836	7.63724989511026	7.82792148430472	7.67816680866395	0.023596672490092	0.897634290195727	0.961755066043397
Merged-chr2-127587277-4	chr2	127587206	127587406	+	983.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029963)	promoter-TSS (NM_029963)	-120.0	NM_029963	77721.0	Mm.274601	NM_029963	ENSMUSG00000027374	Mrps5	1620401I16Rik|AI850294	mitochondrial ribosomal protein S5	protein-coding	5.36148458280887	5.46471737012086	6.0948130701553	5.1959669441824	4.99335006225811	5.28287925562083	4.80352633802074	5.35863791286256	-0.796194855090013	0.0257529416273638	0.151455724373637
Merged-chr7-27361591-4	chr7	27361481	27361681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_032610, exon 33 of 36)	exon (NM_032610, exon 33 of 36)	-5573.0	NM_138676	192192.0	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	8.66893289119145	8.75212024125908	8.72217683598494	8.46373786044649	8.87898881781492	8.8168945702836	8.85219180981115	8.50490297189474	0.152332873784478	0.353004436278742	0.659906317421994
Merged-chr8-115612327-4	chr8	115612219	115612419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_B_Mam|LINE|RTE-X	94575.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	7.36742054988763	7.32494025434067	7.30620740675457	7.34831665036029	7.41643332155177	7.63393382816447	7.71301567066231	7.38371272890782	0.270385605033124	0.131304060503422	0.40342261503747
Merged-chr9-119983835-4	chr9	119983718	119983918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357560)	promoter-TSS (NM_001357560)	-39.0	NM_001357562	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	8.13254385340621	8.42205198799441	7.63773555845818	7.95194466860492	8.52885430353527	8.61776106093601	8.50877510456588	7.89353647830646	0.44514920227051	0.0505243900830922	0.233168183715658
Merged-chr4-139206009-4	chr4	139205904	139206104	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	B3A|SINE|B2	11893.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	3.96942200582365	3.96171838733111	3.85433948198261	3.89294234440528	4.58758276621267	4.35049686335641	4.44960676991967	4.6756928335479	1.49162186384219	0.000138160378218353	0.00266507250981142
Merged-chr12-73585415-3	chr12	73585267	73585467	+	750.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008856, exon 1 of 14)	exon (NM_008856, exon 1 of 14)	571.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	3.0529929305952	3.19128234270063	3.16859761970508	3.15404875458434	3.11838704351116	3.03353892021428	3.04268650515591	2.85760835199313	-0.50369262547435	0.383596673078809	0.685479704586175
Merged-chr8-95321026-2	chr8	95320926	95321126	+	767.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_199455, intron 7 of 7)	intron (NM_199455, intron 7 of 7)	9428.0	NM_199455	73407.0	Mm.472783	NM_028532	ENSMUSG00000090206	Tepp	1700055M20Rik	testis, prostate and placenta expressed	protein-coding	3.47844938686379	3.63888922342112	3.42458435562846	3.21410809097856	3.69414812657582	3.15086321125876	3.41127939457616	3.30688185595338	-0.0878801925992717	0.874520112172923	0.952921542694015
Merged-chr10-52418733-4	chr10	52418658	52418858	+	952.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	1211.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	4.62407938613738	4.45581594756997	4.9915267533849	3.93930328744818	4.43676480922841	4.54744287013397	4.56386862978214	4.76759536872518	0.0801746597494815	0.853346558270205	0.944782811386362
Merged-chr2-6471951-4	chr2	6471877	6472077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	119241.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	6.31700056422098	5.96473072721108	6.44055681349828	6.58445682250691	6.28007344056869	6.3591832436407	6.57778033114633	6.04906834835063	-0.0413478050563602	0.87162001929599	0.951739478016618
Merged-chr7-83665251-4	chr7	83665145	83665345	+	760.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 10 of 18)	intron (NM_001360088, intron 10 of 18)	-9750.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	3.76855203032318	3.57850651034565	3.49894678083946	3.64982415756188	3.77531609913696	3.78531580082683	3.75314026541875	3.6118738097757	0.323767705657977	0.485065914369784	0.759068522102864
Merged-chr11-110562536-4	chr11	110562449	110562649	+	837.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83209.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	4.3759562970644	4.07712218153298	4.29524078404429	4.41978506364648	4.22996499308493	4.28785937510084	4.09733866009172	3.78479157392188	-0.466752064855532	0.271257545561197	0.583005426328374
Merged-chr14-8093587-4	chr14	8093483	8093683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4628.0	NM_145458	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	8.46270155923494	8.42701621182725	8.47886033102494	8.38471372356629	8.37718322098562	8.32047032101621	8.34816649744855	8.35506908655328	-0.107137868190575	0.4581765091194	0.741119194927503
Merged-chr9-110663051-4	chr9	110662956	110663156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	L1MB4|LINE|L1	6553.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	5.64435406287218	5.50740583292249	5.11775043935244	5.11594477719459	5.48324030551734	5.46343176740997	5.51761112073489	5.51553825337898	0.249097668587033	0.400889443799795	0.698614511451234
Merged-chr9-58560416-4	chr9	58560310	58560510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19470.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	6.18280982354272	6.11681157280772	5.81579097048302	5.8909910667039	5.87596933864057	6.28101045434404	6.27641179933467	5.5933003947178	0.0425488850889541	0.877435408959765	0.954164706824192
Merged-chr2-132606359-3	chr2	132606279	132606479	+	800.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 2 of 3)	intron (NR_033469, intron 2 of 3)	8183.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	3.60925395487424	3.33278179098336	3.3498486220341	3.58529607646143	3.24364930659576	3.20601032561853	3.44641734029259	3.34811713280284	-0.594065869555309	0.261609531384992	0.573574767733016
Merged-chr9-121839445-4	chr9	121839341	121839541	+	911.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028384)	promoter-TSS (NM_028384)	20.0	NM_028384	100502861.0	Mm.335550	NM_028384	ENSMUSG00000079235	Ccdc13	2900041A11Rik|Gm188	coiled-coil domain containing 13	protein-coding	4.37736084283839	4.57429226170566	4.471101222197	4.31579921340917	4.94933162290524	4.5569727579906	4.95791920141979	4.88599431350273	0.912200692721534	0.00922812178943693	0.0745106413668057
Merged-chr17-66121763-3	chr17	66121615	66121815	+	768.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1805.0	NM_001003919	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	3.72823721835477	3.25816025284888	3.37442189645365	3.54011822280875	3.11965969359584	3.36539028664928	3.52373671359596	3.48416287734413	-0.379268282931598	0.485529379776277	0.759349088660037
Merged-chr4-128983478-4	chr4	128983390	128983590	+	949.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-9734.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	4.84055419641825	4.25830865260263	4.05563885420212	4.60054998966497	4.27152173265295	4.61895778217754	4.29394598739224	4.60158420330362	-0.0592084833268477	0.887956121926046	0.957980481384822
Merged-chr8-106150336-4	chr8	106150242	106150442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133792)	promoter-TSS (NM_133792)	-12.0	NM_133792	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	7.30938222156386	7.41007554222417	6.99150071220808	7.21734267669031	7.55673294636431	7.29689335453469	7.61751257157566	7.27385682283978	0.278779443949217	0.154538094025743	0.439801241388062
Merged-chr2-60315983-3	chr2	60315890	60316090	+	962.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013825, intron 27 of 34)	intron (NM_013825, intron 27 of 34)	-31506.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	4.58923492080187	4.5167635648249	4.29970842199169	4.97693858710499	4.43845810892129	4.05035284399981	4.23412620605878	4.24977745182304	-0.877594255638543	0.0359059359726268	0.18824104121644
Merged-chr8-45332793-2	chr8	45332693	45332893	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133969, exon 1 of 11)	exon (NM_133969, exon 1 of 11)	403.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	4.66628036586114	4.32259207276129	4.70249192609769	4.42361189401559	4.49540377980191	4.46983783883596	4.27514539644923	4.55132635782298	-0.168353593620939	0.653401486829171	0.854997557892684
Merged-chr18-26740501-4	chr18	26740363	26740563	+	873.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-986306.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	4.14123619507327	4.17849250015288	4.36260632388146	4.42818190929958	4.16247744920491	4.05581511039633	4.30184947523691	4.27616173716951	-0.226171226478389	0.570712769302896	0.81018968611422
Merged-chr8-13159137-4	chr8	13158996	13159196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317353)	promoter-TSS (NM_001317353)	-65.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	6.19247671322226	6.42217675710357	6.29641912768863	6.1532087474331	7.03422446567895	6.98438983256065	6.65057964765518	6.57401367876801	0.823962773250368	0.000269888500718952	0.00465142702001799
Merged-chr10-21993373-6	chr10	21993273	21993473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161850)	promoter-TSS (NM_001161850)	-517.0	NM_001161850	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	5.01732172321828	5.23899307035945	5.79973182234848	5.36747491447617	5.44902480381258	5.23510393736642	5.54421177733429	5.29082243343585	0.00691500229852574	0.982518536289247	0.993788814012798
Merged-chr13-113322220-3	chr13	113322134	113322334	+	937.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112575.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	4.28663284042139	3.90619661168278	3.92872712742147	3.97942158976399	3.53688505931025	3.88670014618524	3.80584052839432	4.56266705858223	-0.0661744134770004	0.897089015110373	0.961535044325176
Merged-chr5-139300754-2	chr5	139300654	139300854	+	854.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 3 of 10)	intron (NM_172723, intron 3 of 10)	24710.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	3.06501544307745	3.11707857508587	3.0001975122707	2.43993449502535	3.65476364228131	3.2428935600924	3.0540596759962	3.1852274085033	1.42994813164288	0.0419890215065166	0.207623241529166
Merged-chr4-133754418-4	chr4	133754317	133754517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080819)	promoter-TSS (NM_001080819)	-806.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	7.65645580300484	7.8270423911921	7.10131101625554	7.33892929917919	7.81301767829207	7.78494553037703	7.07824190524792	7.40002365669365	0.062002485333008	0.800162578491096	0.922957302409984
Merged-chr4-55534645-4	chr4	55534538	55534738	+	822.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2163.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.13920591847425	4.20229925104517	4.31327562968123	4.18027953545911	4.01903644572418	4.21649753328462	4.12197473417971	4.09001954416345	-0.256157110835563	0.521042597387224	0.781113964604575
Merged-chr11-30954003-4	chr11	30953857	30954057	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023906)	promoter-TSS (NM_023906)	174.0	NM_025745	66753.0	Mm.294641	NM_025745	ENSMUSG00000020311	Erlec1	4933407N01Rik	endoplasmic reticulum lectin 1	protein-coding	4.80731433394869	4.79021092719064	4.80809788199456	4.7240166600405	5.13544229006275	5.08881610902098	4.7854293259161	4.84217188909724	0.405329534080637	0.211786596994304	0.516586351389811
Merged-chr3-75751064-2	chr3	75750964	75751164	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95333.0	NR_040539	69193.0	Mm.374088	NR_040539	ENSMUSG00000099370	Platr10	2410007B07Rik	pluripotency associated transcript 10	ncRNA	3.9911093200095	3.87885863640491	3.83723830435292	4.34197930213124	3.84726004649323	3.95785442497793	3.97482422691986	4.21100119211805	-0.124908677315262	0.784522664471149	0.916077120786182
Merged-chr8-88655501-4	chr8	88655402	88655602	+	877.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 2 of 12)	intron (NM_145857, intron 2 of 12)	8155.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	4.04740332101834	3.8473879811415	4.27797130120448	4.37158618294657	4.09851903545104	4.22203637214907	4.12703607366118	4.35659835465505	0.0916439320505772	0.829696319643848	0.934618333601978
Merged-chr3-135420735-4	chr3	135420636	135420836	+	973.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025902, intron 1 of 2)	intron (NM_025902, intron 1 of 2)	2697.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	4.79811751929343	4.74043838732712	5.06788669650526	5.12978115389837	5.60733336002589	5.37350882730129	5.23461745069798	5.39802970930047	0.842776237076727	0.00753002386013733	0.0643147761019092
Merged-chr12-112552227-4	chr12	112552145	112552345	+	899.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36539.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	4.60831456110636	4.50939662115155	4.44750243659737	4.74119968249481	4.46928762108671	4.48700432311055	4.46951564332979	4.40099674529389	-0.309530730815156	0.39291393228718	0.692205902019298
Merged-chr14-9556000-4	chr14	9555848	9556048	+	770.924988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 9 of 9)	intron (NM_001360141, intron 9 of 9)	-328147.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	3.8741402683098	3.995721540259	4.40631730990984	3.96433827517803	4.03767982099197	4.0509990508833	4.01259898995005	4.16554533127997	-0.00421450377746568	0.99217434423298	0.997048998999863
Merged-chr9-101034892-1	chr9	101034792	101034992	+	1000.0	f0_c57.idr	promoter-TSS (NM_025835)	promoter-TSS (NM_025835)	-8.0	NM_025835	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	6.86705920037633	6.63241041039044	6.85471745399378	6.52817915482731	6.95171621259658	7.16003426216163	6.81991022964726	7.05063347152819	0.399840026609363	0.0543599594336723	0.243443283788182
Merged-chr12-80116490-3	chr12	80116384	80116584	+	872.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3471.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	3.4532358163691	3.52338951753208	3.26599720166591	3.23125587803955	3.75439087847016	3.62765098934491	3.74669576297156	3.66624688864445	1.10364571137274	0.0236713142646727	0.143042743700241
Merged-chr4-6517806-4	chr4	6517688	6517888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63517.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	5.39202235560152	5.05730635561193	5.48069159447176	5.61213834266941	5.63129299969427	5.26834165921089	5.89727089287273	5.79895706921565	0.442042538518636	0.149251401478159	0.431413827647266
Merged-chr17-62784121-4	chr17	62783989	62784189	+	906.837524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010109, intron 1 of 3)	intron (NM_010109, intron 1 of 3)	97228.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	4.36838796012988	4.06425623232654	4.13099559268089	4.44176622649971	4.6595928441522	4.7014910077391	4.34941547625549	4.36631972490952	0.597141418970733	0.13174083349789	0.404170189899083
Merged-chr1-134679630-4	chr1	134679526	134679726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009307, intron 2 of 9)	MLT1G1|LTR|ERVL-MaLR	-29674.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	7.47599067081924	7.60720901940948	7.74334744088384	7.8587794028696	7.38649149128174	7.42462178765236	7.69022752126292	7.52817137947019	-0.235395157076622	0.204422269250643	0.50769618642678
Merged-chr6-87187080-4	chr6	87186994	87187194	+	904.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054041, intron 16 of 17)	intron (NM_054041, intron 16 of 17)	82348.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	3.78804431702227	4.06326003164575	3.89516136328689	3.78735305482917	4.09963815727402	4.21041069618117	4.23010232966802	3.40537520927339	0.380498188925121	0.445690514438313	0.731671320799037
Merged-chr8-69888612-2	chr8	69888524	69888724	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001353930, intron 5 of 5)	intron (NM_001353930, intron 5 of 5)	-1232.0	NM_026818	68709.0	Mm.334584	NM_026818	ENSMUSG00000044006	Cilp2	1110031K21Rik|AA407300|CLIP-2	cartilage intermediate layer protein 2	protein-coding	2.90915789866448	2.74604195217744	2.96636774753674	2.63486141443967	2.35946637509008	2.5322694473456	3.2008277000643	2.58083854256574	-0.488817901394275	0.526208536056962	0.783568247232079
Merged-chr9-45229535-4	chr9	45229397	45229597	+	929.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	-25422.0	NM_145403	214523.0	Mm.436756	NM_145403	ENSMUSG00000032091	Tmprss4	mCAP2	transmembrane protease, serine 4	protein-coding	4.67556375944348	5.1408315619383	4.83524313624396	4.04545750265492	5.38112894865743	5.04726628136059	4.73555354535761	4.97330232796669	0.658608260569722	0.114903959483313	0.375120347294535
Merged-chr7-44983292-4	chr7	44983193	44983393	+	935.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252476, intron 2 of 9)	intron (NM_001252476, intron 2 of 9)	3127.0	NM_001252476	15469.0	Mm.27545	NM_019830	ENSMUSG00000109324	Prmt1	6720434D09Rik|AW214366|Hrmt1l2|Mrmt1	protein arginine N-methyltransferase 1	protein-coding	4.52834981527289	4.50750998019879	4.64571568831393	4.11189248585372	4.76191536371278	4.57578707187156	4.62358384764962	4.3522752344835	0.332505454496034	0.392008128372382	0.691672159079293
Merged-chr5-146785570-4	chr5	146785461	146785661	+	846.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	(GGA)n|Simple_repeat|Simple_repeat	9395.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	4.528573004947	3.97896574908807	4.08818197411446	4.25114703718691	4.84733378462833	4.21427680294499	4.39173061353476	4.23443124626743	0.552998016596514	0.199289684504534	0.501112689813913
Merged-chr6-115676602-4	chr6	115676490	115676690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356334)	promoter-TSS (NM_001356334)	45.0	NM_001356333	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	7.75315007096436	7.95976084119372	7.6544763783281	7.4419484581043	7.9541566722925	7.97134270851434	8.11634358773714	7.76508907389686	0.324072351403682	0.0869081380083564	0.321536168995104
Merged-chr7-38107983-1	chr7	38107883	38108083	+	1000.0	f0_c57.idr	promoter-TSS (NM_007633)	promoter-TSS (NM_007633)	-493.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	6.96108238380856	7.21608812332954	7.48437701595004	7.20819684260232	7.0696803657313	7.31528066416786	7.30674371146146	7.26652524032224	0.0112235730372161	0.954822293176376	0.983860069670035
Merged-chr14-50931829-4	chr14	50931736	50931936	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310505)	promoter-TSS (NM_001310505)	-987.0	NM_001310507	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	4.55567668801913	4.53358995073914	4.33572554532507	4.87977274495661	4.20506501414015	4.51297358326421	4.75582732709729	4.70596621574845	-0.116628493116851	0.769572728795457	0.909742530773464
Merged-chr17-26705623-4	chr17	26705489	26705689	+	785.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10061.0	NM_029870	77128.0	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	4.13903650839671	3.64129425599656	3.83604414079021	3.76071824047761	3.73306308254052	3.85352928370422	3.49022856657045	3.73182926981428	-0.42144287635459	0.380291272526218	0.682726808089782
Merged-chr8-128680777-4	chr8	128680702	128680902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4852.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	6.91771136175697	7.51538511737839	7.19999949265614	6.98535693654448	7.44725204656648	7.33227010318899	6.73952894729216	6.85805106269709	-0.0532110252497984	0.830576432472834	0.93499882818844
Merged-chr3-100530385-7	chr3	100530280	100530480	+	985.253967	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41188.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	4.65538506549484	4.37504057546296	4.9726161496007	4.85111991787257	5.13138235665464	5.07677072093166	5.200017454032	5.57097120397048	1.00256687495388	0.00403219140039106	0.0402987014445992
Merged-chr12-55465738-4	chr12	55465639	55465839	+	935.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26908.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	4.44898361692545	4.43896665919159	4.53067082106219	4.42801378432956	4.62461255100224	4.39811162925852	4.15367707739487	4.5663008713651	-0.00468045528317943	0.990095799263579	0.996085111514102
Merged-chr7-101663656-4	chr7	101663570	101663770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009191)	promoter-TSS (NM_009191)	-98.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	7.19789330212846	7.37959600402104	6.56232668662055	7.00237934880092	7.36756611028652	7.32034681992283	7.11894416939618	6.70994373770822	0.118657793523251	0.634964563552859	0.845499285207272
Merged-chr17-88581726-4	chr17	88581648	88581848	+	933.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 19 of 21)	intron (NM_028658, intron 19 of 21)	-44807.0	NM_029858	77057.0	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	4.36857648915434	3.91435015191447	3.97976629822659	3.98806251945411	4.17485969089386	4.15321618514516	3.80388327653543	4.12079571040888	0.0172422869598584	0.968403055484491	0.988694268692349
Merged-chr10-116515288-4	chr10	116515155	116515355	+	818.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037848, intron 4 of 4)	intron (NM_001037848, intron 4 of 4)	12694.0	NM_001359253	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	3.56942959324229	3.43886347266607	3.40101803700615	3.66766618660244	3.47014185701361	3.45237570166113	3.60668427132727	3.71682606736104	0.0976848130178533	0.844176886641957	0.94088019607581
Merged-chr18-56451822-4	chr18	56451713	56451913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	19681.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	7.04923372475152	7.08832486198729	7.48398696951206	7.19981629292705	7.06126938656013	6.85901438509536	7.39367610796084	6.90195011692869	-0.193050822642251	0.371668725150374	0.675648274485467
Merged-chr17-35001020-4	chr17	35000944	35001144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033075)	promoter-TSS (NM_033075)	137.0	NM_011690	22321.0	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	6.06195921032686	6.20910217924229	6.39023090171264	5.73269814273839	6.10357182445484	6.53084355686176	6.34044388820197	6.43543907377414	0.382297583988359	0.143662643946857	0.422065835669136
Merged-chr8-47675234-4	chr8	47675122	47675322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023503)	promoter-TSS (NM_023503)	-63.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	8.87100067147418	8.64910649953284	8.87237553436098	8.68854052921014	8.90312592551956	9.11820673011728	9.07061007249088	9.10521337897434	0.347234958015528	0.020009616604287	0.128069822882523
Merged-chr10-81570970-4	chr10	81570871	81571071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4316.0	NM_019725	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	5.7524486657096	5.99034640351935	6.27314456771843	5.65258469690856	5.91900243233142	6.22438391805934	5.53167565875066	5.93992658390899	-0.00660014420550138	0.981790790417446	0.993492379943959
Merged-chr10-13268274-4	chr10	13268147	13268347	+	836.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359294, intron 2 of 11)	GA-rich|Low_complexity|Low_complexity	56042.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	4.22925675524229	3.88742633177748	4.38951068396505	3.78826028393982	4.27586509361505	4.06911231229838	3.82010511949187	4.26898991615484	0.10854787704185	0.812812297303364	0.927656717651261
Merged-chr11-80144345-1	chr11	80144245	80144445	+	669.0	f0_balb.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-2192.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	3.85538704804874	3.4376780230987	3.81272367906321	3.60779938652472	3.43867511728404	3.51454406797059	3.38736724778269	3.27053514298785	-0.922062038319299	0.075581415335231	0.296959388550724
Merged-chr16-36041140-4	chr16	36041024	36041224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027113)	promoter-TSS (NM_027113)	-66.0	NM_027113	69544.0	Mm.37802	NM_027113	ENSMUSG00000034379	Wdr5b	2310009C03Rik|AI606931	WD repeat domain 5B	protein-coding	7.85202010023396	7.95939516359492	7.4616539929204	7.87563672249069	7.84035426651393	7.84169154415682	7.724630156205	7.53397267463364	-0.0819549686824577	0.662845095857292	0.860270058311323
Merged-chr14-75754605-4	chr14	75754513	75754713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177381)	promoter-TSS (NM_177381)	-120.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	7.67474890739279	7.59001703873423	7.42765556635788	7.6256196392907	7.74104350703019	8.0173316685921	7.84511598169765	7.72787514091532	0.325601440643541	0.0593998211394945	0.25685226250934
Merged-chr7-126941309-4	chr7	126941212	126941412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172747, intron 2 of 5)	intron (NM_172747, intron 2 of 5)	7847.0	NM_001347657	233879.0	Mm.444143	NM_001039645	ENSMUSG00000046378	Asphd1	A830007L07Rik|Gm168	aspartate beta-hydroxylase domain containing 1	protein-coding	5.5074441159586	5.45106440475843	5.56464121054436	5.49066781278294	5.69202259647661	5.6558531197021	5.80610771150182	5.99746350655918	0.486295183585678	0.0618975541918485	0.263206046348144
Merged-chr9-44512208-4	chr9	44512146	44512346	+	969.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030256)	TTS (NM_030256)	13110.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	4.90472430000822	5.2248411866351	5.1699765149374	4.75167944337361	4.92708469430525	4.70710299328364	5.17348684293732	5.04120361416363	-0.0805231534594369	0.812750915479247	0.927656717651261
Merged-chr15-25860530-2	chr15	25860430	25860630	+	844.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 1 of 8)	intron (NM_001034851, intron 1 of 8)	17232.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	3.20241808378862	3.04169764525728	3.14721028030742	3.34815894619254	3.1801094453317	2.8557755063099	3.24292750723676	2.96300397103591	-0.488482792047491	0.4151506266469	0.709504359241972
Merged-chr13-23556228-4	chr13	23556084	23556284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145713)	TTS (NM_145713)	1152.0	NM_145713	14957.0	Mm.247046	NM_145713	ENSMUSG00000052565	Hist1h1d	H1.3|H1D|H1f3|H1s-4	histone cluster 1, H1d	protein-coding	6.43838671659735	6.51480428580971	6.69861828277214	6.57251884566295	6.59774853267367	6.38225407120611	6.9726062873994	6.8451539580194	0.228359014535107	0.310934283504442	0.623003793544621
Merged-chr18-65507034-3	chr18	65506923	65507123	+	999.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	-73207.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	3.64882434478054	3.51990022475385	3.89763786764054	4.06741776443342	3.75743747911083	3.6504574549163	3.63524849444416	3.64734428263354	-0.415043754837113	0.398820099045069	0.696927853372062
Merged-chr10-127058412-4	chr10	127058323	127058523	+	977.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033262, intron 1 of 3)	intron (NM_001033262, intron 1 of 3)	1761.0	NM_001033262	216438.0	Mm.37892	NM_001033262	ENSMUSG00000040502	March9	AI608492|BC019560	membrane-associated ring finger (C3HC4) 9	protein-coding	4.64298620214512	4.91367666877662	4.55738122657722	4.5641655429099	4.76296901485007	4.86004946243288	4.81408849160226	5.2041738872432	0.502701556216947	0.147542324380738	0.428684590868503
Merged-chr10-119056724-4	chr10	119056616	119056816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6217.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	5.91200327971371	5.83261803369645	5.74212336842398	6.30665176028854	5.91031598946583	6.06535404191669	6.03254518288998	5.76391710770515	-0.0702039719725112	0.794766025769064	0.920603107178875
Merged-chr1-125561448-3	chr1	125561351	125561551	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028787, intron 1 of 15)	intron (NM_028787, intron 1 of 15)	449.0	NM_028787	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	5.91604978865513	5.85434675002346	5.436540154837	5.71435230477362	5.69525442783221	5.45299721863311	5.63288868699939	5.78004537829946	-0.154929622147588	0.567300664602725	0.808228298187734
Merged-chr7-137314551-4	chr7	137314448	137314648	+	904.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010096)	promoter-TSS (NM_010096)	-103.0	NM_010096	13593.0	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	3.69240660164348	3.78233397864782	3.57750908374093	3.90098080052913	3.68905143030337	4.06549984630762	4.05370450021775	3.57571010903969	0.30337734959964	0.529380801930054	0.785614700149936
Merged-chr4-155505199-4	chr4	155505114	155505314	+	944.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160017, intron 1 of 10)	intron (NM_001160017, intron 1 of 10)	13853.0	NM_001160016	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	5.00303322796687	4.89408112959484	4.48328682549412	4.97405816451208	5.28270046274614	4.80148861559192	5.01168916858343	4.82436244363227	0.285341758739918	0.41694677449817	0.710744672757979
Merged-chr4-83567881-4	chr4	83567771	83567971	+	817.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355549, intron 6 of 24)	intron (NM_001355549, intron 6 of 24)	42326.0	NM_001355378	320226.0	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	4.27669784457579	4.41022614153625	4.58641213652858	4.06060558194113	4.03191598590861	4.26507639583718	4.02101799820054	4.23018956372717	-0.495758914990525	0.237476920568003	0.547644711485644
Merged-chr9-124142041-4	chr9	124141922	124142122	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20479.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	5.56011666365698	6.19727150193664	5.67142081311431	5.48049417009776	6.2336263154375	6.06396406990431	5.7435015529201	5.23217750988222	0.196455707390571	0.560861382610493	0.804760543341901
Merged-chr14-26534979-4	chr14	26534870	26535070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347494)	promoter-TSS (NM_001347494)	-346.0	NM_001310445	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	6.75226033920594	6.99251859756719	6.30837704609816	6.78338800653739	6.97300258549084	6.76098109676729	6.80240920808758	6.6744118855594	0.104721141254058	0.645280172660165	0.850815008331688
Merged-chr15-50870317-4	chr15	50870224	50870424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	18725.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	7.09421182933922	7.10786066436641	7.1884692683909	7.50373860118836	7.18367976467845	7.07774291010187	7.3291626380243	7.1378095552538	-0.0858727398923027	0.668091130736447	0.862837936034118
Merged-chr8-120750772-4	chr8	120750656	120750856	+	983.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 6 of 8)	intron (NM_001301811, intron 6 of 8)	12117.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	5.55617283232268	4.65235430789519	5.70123497077445	6.37230694274349	5.27933438977882	4.55235967599404	5.21482920864826	5.26963977520714	-1.04659551626247	0.125753468088146	0.393815330829051
Merged-chr7-51987076-4	chr7	51986994	51987194	+	899.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330607, intron 7 of 7)	intron (NM_001330607, intron 7 of 7)	18620.0	NR_027704	75744.0	Mm.386823	NM_001160345	ENSMUSG00000074093	Svip	1700006C13Rik|6620401M08Rik	small VCP/p97-interacting protein	protein-coding	4.4138980094521	4.5097931624861	4.72091481495069	4.74886645946229	4.18177023293089	4.3561173059398	4.4369085862926	4.32227370018436	-0.682826097523695	0.0705754198640842	0.284741076507525
Merged-chr3-65973510-4	chr3	65973414	65973614	+	987.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15265.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	4.98324234465378	5.20854496613202	4.94706285270623	5.03343834442577	5.2311557928024	5.32764528012166	5.25004239791923	5.15110530257837	0.358397590586973	0.22689608538205	0.535593906991684
Merged-chr2-143956967-2	chr2	143956867	143957067	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 11 of 23)	intron (NM_024281, intron 11 of 23)	41636.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	2.69658050639228	2.69855020655354	2.91077063069019	2.75624053974454	3.01698284223598	3.14957128706408	3.24245040786726	3.35223923531341	1.80058285897872	0.00289925471062032	0.0311329639980587
Merged-chr16-10545339-4	chr16	10545252	10545452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204229)	promoter-TSS (NM_001204229)	13.0	NM_001204229	74374.0	Mm.159176	NM_177562	ENSMUSG00000068663	Clec16a	4932416N17Rik|curt|mKIAA0350	C-type lectin domain family 16, member A	protein-coding	7.61499017329168	7.80339985940657	7.4802320274626	7.76430841369997	7.64588387438925	7.68603228662386	7.70898037477076	7.11098925960323	-0.151410161307339	0.454573910990353	0.738370105894031
Merged-chr14-74919332-4	chr14	74919238	74919438	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	28539.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	4.30218822831937	4.8172909692741	4.04468344652729	4.28137767710504	4.92354627391332	4.5675046583713	4.08382830108511	4.39069223235048	0.31979743447052	0.478489456136272	0.754539434585575
Merged-chr9-99386825-3	chr9	99386730	99386930	+	925.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008624, exon 6 of 6)	3' UTR (NM_008624, exon 6 of 6)	-28300.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	3.93475236059859	3.63842965976957	4.21891715732652	4.44066029058088	4.13812385747861	4.34558207164222	3.75273101102449	4.1285983967052	0.0058822367701879	0.990461305710475	0.996241772590875
Merged-chr2-69128986-4	chr2	69128881	69129081	+	956.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-6819.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	5.19109370602837	5.29064870340364	5.00606448815407	5.52208336802018	5.32322970081283	5.06637458646401	6.03024158873825	6.03986511406143	0.696792762933531	0.0525556522454388	0.238864617277191
Merged-chr1-173740805-5	chr1	173740698	173740898	+	772.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204910, intron 1 of 7)	intron (NM_001204910, intron 1 of 7)	1011.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	4.07657615023475	4.33478321255059	3.85889646552434	4.22091408572349	4.3047413455298	4.39117803163156	4.40644216242098	4.12408124786482	0.408919549469183	0.319323379337826	0.631175598074179
Merged-chr12-79755274-3	chr12	79755169	79755369	+	999.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	169464.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	4.41698653147362	4.58343941166084	4.37851146255939	4.44249895277253	3.76734032502915	3.77260510708836	4.04695639261448	4.15942575680281	-1.34297778467714	0.00164611462986548	0.0201079102864587
Merged-chr2-129547554-2	chr2	129547454	129547654	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10952.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	3.59411818740932	3.31216331000744	3.2805795596835	2.89918445434779	3.44791981298004	2.97891974645958	3.32528537184046	3.54519320507351	0.181757156978305	0.765849142843598	0.908405583340288
Merged-chr7-29856499-2	chr7	29856406	29856606	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-2858.0	NM_173738	233057.0	Mm.296864	NM_173738	ENSMUSG00000050855	Zfp940	-	zinc finger protein 940	protein-coding	2.71292199064108	2.81808829272431	2.71318792827863	2.62104708723703	2.99371965451804	2.96241155579752	3.36857523824451	3.03495524918556	1.70743732708396	0.00531510264385437	0.049745948107713
Merged-chr11-116071607-4	chr11	116071516	116071716	+	940.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009573, intron 13 of 32)	intron (NM_001009573, intron 13 of 32)	6345.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	4.09208098481661	4.52399335844749	3.92431656635728	3.97479257424272	4.50637843948216	4.54881862089313	4.39767362908577	4.64038767485013	0.896135577779032	0.0277436461354268	0.159075639461378
Merged-chr18-67699752-4	chr18	67699660	67699860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008977, intron 2 of 9)	intron (NM_008977, intron 2 of 9)	24861.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	5.96389226050312	5.93129375341136	5.69051036205737	6.06362647843496	6.09396519168541	6.30724120756595	6.38015030195414	5.74092311612021	0.345052953291148	0.191576669722145	0.490975870844874
Merged-chr4-152171725-3	chr4	152171627	152171827	+	792.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-6373.0	NM_133348	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	3.03723008296595	3.45639126840094	3.03754380491698	3.26725388524604	3.09341141705012	3.27340118483392	3.31903568545989	3.27681625536992	0.0827445258390342	0.883845599463097	0.956344438085205
Merged-chr9-107556402-5	chr9	107556225	107556425	+	970.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019713, intron 1 of 4)	intron (NM_019713, intron 1 of 4)	1742.0	NM_019713	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	3.63795602396805	3.95448154048029	3.90778573851329	3.78566111192207	3.95079416708429	3.81540047378211	4.02774271117646	3.95313265964238	0.323874985179077	0.459874447897093	0.742271214480192
Merged-chr3-116256321-4	chr3	116256216	116256416	+	830.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2832.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	4.16673510848282	4.1847476991286	4.02575941530602	4.18124518111885	4.3705491043056	3.86958702749801	4.23446258541043	4.02345681972219	0.0181805307963559	0.96560942601158	0.987856636398733
Merged-chr11-109468373-4	chr11	109468271	109468471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029842, intron 1 of 5)	intron (NM_001029842, intron 1 of 5)	4858.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	4.85603227627134	4.93728056920557	5.37028537390984	5.32814094441229	5.15958272777442	4.99285038718502	5.17613018788686	5.07081142058764	-0.0941257512383621	0.770933019034754	0.910337619434211
Merged-chr17-45584246-4	chr17	45584152	45584352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001199116)	TTS (NM_001199116)	8141.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	6.85312660139114	7.40905855050524	7.04187001814285	7.24656339467421	7.04827499603416	7.15527957453622	7.13585794537414	7.25346477998286	-0.022749488358482	0.911304257845358	0.96695373445261
Merged-chr9-75441515-4	chr9	75441414	75441614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039522)	promoter-TSS (NM_001039522)	-10.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	7.38766038853407	7.84405902813235	7.81981491595939	7.53250286181289	7.57981905519726	7.61676307944912	7.49733677781681	7.47308537976093	-0.150138394619081	0.422633095690436	0.714839748072846
Merged-chr2-152742632-4	chr2	152742527	152742727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6376.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	7.21574393036829	7.45030704500642	5.99934381374223	7.05169277747154	6.71172330905568	6.74586186164564	6.69255951739263	6.64494972092548	-0.471317179958781	0.114280247909249	0.373859772452381
Merged-chr2-45231776-4	chr2	45231669	45231869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114327.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.04605227185446	7.81289081894496	6.92041557022492	6.37954707321513	7.02002232612518	6.95759879937601	7.20088318667864	6.58153408768545	-0.254855588211974	0.411582078896896	0.707035134398507
Merged-chr9-107259842-1	chr9	107259742	107259942	+	855.3333130000001	f0_balb.idr	intron (NM_001316691, intron 5 of 7)	intron (NM_001316691, intron 5 of 7)	-27933.0	NM_153413	208869.0	Mm.150259	NM_153413	ENSMUSG00000039716	Dock3	MOCA|PBP|mKIAA0299	dedicator of cyto-kinesis 3	protein-coding	3.31541822159874	3.32463871575922	3.46781513159367	3.63412975172844	2.8400664641339	2.90269582528187	2.93662236229647	3.14183658006814	-2.09546204179128	0.000877009940615449	0.0121166567218787
Merged-chr12-34547265-4	chr12	34547160	34547360	+	862.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	L1M5|LINE|L1	-18371.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	4.19188948896472	4.19768360534654	4.462766058272	4.36641253786095	4.54549745106497	4.63328922528602	4.4817802524923	4.33201135150839	0.4407217082303	0.239313523904962	0.549703033561985
Merged-chr6-134135113-4	chr6	134135016	134135216	+	989.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	99416.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	5.05617303670819	5.42934934105291	4.75426278285724	4.96251916211501	5.27163719794942	5.16246504840488	4.99857057070867	4.98437546784259	0.0797393812935506	0.810795929033123	0.926854276252049
Merged-chr2-122771196-4	chr2	122771086	122771286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027888)	promoter-TSS (NR_027888)	-527.0	NR_027888	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	7.61225597276287	7.95059733879416	7.7377281190478	7.66368572160872	7.64811765624165	7.61383166230676	7.85499314169699	7.20063616531114	-0.189939991507109	0.344015555124323	0.652570542833357
Merged-chr2-60809007-3	chr2	60808916	60809116	+	840.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	MLT1C|LTR|ERVL-MaLR	72422.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	4.41796410635392	3.84016486734477	4.45344095015258	4.71162976080739	3.58173925242385	3.66926083751786	3.39311091369643	3.54477253575518	-2.50427525648776	3.10781408103664e-06	9.74498231163467e-05
Merged-chr1-105790507-7	chr1	105790386	105790586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	9763.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	6.08042920663952	5.68983159916848	6.48890481056356	6.12905381024727	5.8967084288927	6.31801192776411	5.98632712248036	6.21565112253938	-0.0245261473426461	0.928631402622959	0.974091893381396
Merged-chr5-121501675-4	chr5	121501564	121501764	+	731.424988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172125, exon 1 of 1)	exon (NM_172125, exon 1 of 1)	1316.0	NM_172125	280667.0	Mm.444773	NM_172125	ENSMUSG00000062438	Adam1b	Adam1|Ftna	a disintegrin and metallopeptidase domain 1b	protein-coding	3.73645500414349	3.81196787164317	3.78853694346221	3.76797795219965	3.76258315186894	4.00529198792534	3.55721581618592	3.7863572161256	0.0249413259300761	0.956499356225891	0.984691114511791
Merged-chr17-34165296-4	chr17	34165241	34165441	+	822.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	12150.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	3.23643241314715	3.49994008883474	3.78939470848188	2.98893547312138	3.55794960351814	3.71525102778644	3.72646034794307	3.48429092444742	0.706599760438179	0.210015886921871	0.514484230514723
Merged-chr1-189806735-1	chr1	189806635	189806835	+	668.0	f0_c57.idr	intron (NM_008976, intron 3 of 18)	ORR1E|LTR|ERVL-MaLR	78467.0	NM_008976	19250.0	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	2.57837275521742	2.44181533252649	2.49529263871224	2.33428428848576	3.19270757868075	3.05220591562566	3.29963332928186	3.36032384895612	4.1009311694162	3.88322915530132e-08	1.83413648337885e-06
Merged-chr11-78094670-4	chr11	78094561	78094761	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346762)	promoter-TSS (NM_001346762)	-6.0	NM_001346762	216971.0	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	5.55571285121125	5.40490458446569	5.25378029253844	5.06078350139267	5.17089549263133	5.26460841665261	5.45336617062836	5.08438221512146	-0.125001891721017	0.6859708272033	0.871760528240684
Merged-chr4-149518124-4	chr4	149518022	149518222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023465)	promoter-TSS (NM_023465)	-119.0	NM_023465	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	8.2414254385144	8.74937054961478	8.27762358028301	8.14746706194063	8.40829168682319	8.39068927545926	8.3791739373985	8.17081618234806	-0.0418282092634738	0.824734325303617	0.932768166215717
Merged-chr6-49031446-4	chr6	49031355	49031555	+	964.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5063.0	NM_053110	93695.0	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	4.75614495202848	4.37470712733408	4.56905147241227	5.01755702499622	4.74757477348481	4.26898365348354	4.2817119914572	4.64452949562385	-0.440585869523035	0.278035150403355	0.590155184903691
Merged-chr9-104285099-4	chr9	104284989	104285189	+	849.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22159.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	4.28487736761936	4.31476703847278	4.54461750027664	4.48399244192615	4.54569526297335	4.71342576758105	4.56169475294959	4.3296039206123	0.289279755775227	0.434150004709986	0.723505412653402
Merged-chr15-97880718-4	chr15	97880592	97880792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009504, intron 3 of 9)	intron (NM_009504, intron 3 of 9)	27604.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	6.32614616900199	6.32451245508829	6.46790447383134	6.66736318930464	6.61983397047975	6.04134865354922	6.21862402041353	6.54373303226432	-0.11359163031303	0.645717649896221	0.850934142345746
Merged-chr7-100227421-4	chr7	100227377	100227577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027629)	promoter-TSS (NM_027629)	-130.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	6.09677177233399	6.62866870489043	6.76878302864159	5.99616573689969	5.93604818805102	6.43627173347729	5.85683490871491	6.38198995268687	-0.353635853470849	0.230666094992101	0.540191550156043
Merged-chr14-75175153-5	chr14	75174916	75175116	+	844.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	38591.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	3.94038352216809	3.47247060758019	3.70823501050875	3.74776529274499	3.48529100360934	3.71939921463416	3.41215077932109	3.80424401922284	-0.358255502097638	0.472272503343053	0.750462332502573
Merged-chr12-87374344-4	chr12	87374245	87374445	+	821.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011479, intron 1 of 11)	intron (NM_011479, intron 1 of 11)	14010.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	3.28813578736656	3.77468034259329	3.70894455115468	3.81657311526106	3.30931255712092	3.92912269951906	3.92491887698125	3.54275630966037	0.0957394829875193	0.860613007498253	0.947291826627875
Merged-chr7-132714351-3	chr7	132714252	132714452	+	936.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175268, exon 5 of 5)	3' UTR (NM_175268, exon 5 of 5)	62564.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	4.03025655119457	3.81750363511843	4.4169979871569	4.59343497740786	3.370323807178	3.29567605642942	3.71191652841433	3.5427638760952	-2.36047560149506	2.15100213249898e-05	0.000543315048932381
Merged-chr4-109413976-3	chr4	109413904	109414104	+	891.2333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153392, intron 1 of 17)	ORR1E|LTR|ERVL-MaLR	-1643.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	4.61931054059542	4.9595119455421	4.65455690939273	4.48028716160589	3.69108907382532	3.88649360632153	3.93159715025036	4.00222947010437	-2.1115005380441	1.95493729479559e-06	6.42430663463784e-05
Merged-chr2-157064205-4	chr2	157064110	157064310	+	909.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	15055.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	4.33058683787808	4.54717482378062	4.88811076204042	4.38421767955264	4.46681936235182	4.46044252985798	4.52415260557137	4.18111860335517	-0.297313406772595	0.448660768147341	0.733878953633932
Merged-chr5-43877592-4	chr5	43877470	43877670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	8761.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	7.2307512817012	7.06997696180896	7.62530443635811	7.59320546717693	6.90644248559429	6.93224474086014	7.02371850802189	6.91077442840419	-0.633863956226904	0.00257445004245366	0.0283515809044298
Merged-chr7-126086367-4	chr7	126086281	126086481	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3970.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	4.75943707371813	5.18013875527542	5.00807670395712	4.87753345596745	5.18130213794141	4.72761743544615	4.65808172091332	4.45058252557924	-0.328744127329353	0.378071966165893	0.680676787078483
Merged-chr1-127248762-4	chr1	127248684	127248884	+	946.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	43798.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	4.79927182197862	4.6188225665845	4.65264636467667	4.88354109112777	4.66153916492293	4.57127036811241	4.32679457644943	4.76162012995692	-0.341577672635083	0.339935992966085	0.648997231458602
Merged-chr17-35242775-4	chr17	35242695	35242895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252457)	promoter-TSS (NM_001252457)	-22.0	NM_001252457	53817.0	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	6.9983823048333	7.11551127205052	7.0965249004057	7.00622962557198	7.18104378505065	6.89632762880418	6.89992128854687	7.11462546327778	-0.0217950392316815	0.90954659481118	0.966335558422368
Merged-chr1-151343718-4	chr1	151343636	151343836	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359262)	promoter-TSS (NM_001359262)	-750.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	4.76031721987882	4.84072053230514	4.43565824613266	4.53320954788107	4.78337133927197	4.82105999021112	4.32135935057498	4.72153893798113	0.0669921358151604	0.855804276481233	0.945772149355013
Merged-chr11-120630112-4	chr11	120629968	120630168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010756, intron 1 of 2)	intron (NM_010756, intron 1 of 2)	3479.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	4.69047651123812	4.59055683636918	4.8046066248143	4.1735478313399	4.85658037218283	4.94123718452882	4.74507858414183	5.03176324112374	0.702165423392609	0.0558839142189746	0.247419364943235
Merged-chr8-71272604-4	chr8	71272486	71272686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142323)	promoter-TSS (NM_001142323)	4.0	NM_001163042	76478.0	Mm.27355	NM_029621	ENSMUSG00000035439	Haus8	2410004L22Rik|Hice1	4HAUS augmin-like complex, subunit 8	protein-coding	8.39784593270794	8.42736121066261	8.33972034033691	8.45254214793073	8.62722365957457	8.67844230737686	8.37583015860286	8.30061417230036	0.126601372963886	0.434241485286947	0.723556221762245
Merged-chr1-142688970-1	chr1	142688870	142689070	+	780.0	f0_balb.idr	Intergenic	Intergenic	-951727.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	3.43907616604108	3.16358684253873	3.43961344343017	3.51139033265682	2.93695994710401	3.02574092962577	2.90848396168436	2.84253801327177	-2.0007519831659	0.00141349299489844	0.0178041086327865
Merged-chr13-51107046-4	chr13	51106949	51107149	+	989.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283029, intron 1 of 5)	MTE2b|LTR|ERVL-MaLR	5502.0	NM_001283029	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	5.33973724732859	5.14407704654819	5.02788446895631	5.3507207553843	5.45669026244998	5.09402632861194	4.93146079530932	4.9136201796685	-0.177394587405837	0.587746068929383	0.819334771057997
Merged-chr3-69004546-4	chr3	69004445	69004645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133786)	promoter-TSS (NM_133786)	25.0	NM_026641	68259.0	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	7.45365855800998	7.64197426634457	7.16451412372065	7.41922853455242	7.7420282065972	7.6321523636919	7.66079160188702	7.30765219313529	0.220909767586516	0.260046306003435	0.571838364330641
Merged-chr10-99190958-4	chr10	99190836	99191036	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	B3|SINE|B2	-72295.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	5.17960790088522	4.88497909010814	4.73698501512496	5.03142500059078	5.28182201009285	5.38391350430401	5.30103704148021	5.23785837745154	0.612105817707802	0.0444433241042105	0.214950830088578
Merged-chr8-3493152-4	chr8	3493061	3493261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080461)	promoter-TSS (NM_080461)	23.0	NM_080461	140482.0	Mm.299073	NM_080461	ENSMUSG00000047264	Zfp358	Zfend	zinc finger protein 358	protein-coding	5.98081262574377	5.94730578162082	6.27958051480267	6.25367569754813	5.82842941044738	5.83112795740087	6.29899692258506	6.10517152487364	-0.161764349213712	0.528965109458562	0.785359737535491
Merged-chr18-79110222-4	chr18	79110139	79110339	+	913.875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053099)	promoter-TSS (NM_053099)	-848.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	3.4052470785068	3.17968542039461	3.79031962146042	3.60698939475145	3.05436025760594	3.40239641894057	3.21448927052685	3.45872267976445	-0.806012722523425	0.158206630826947	0.445101416370722
Merged-chr3-149083652-3	chr3	149083548	149083748	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129013.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	5.41746742204736	5.22551160556089	5.72906591949336	5.7720400612154	4.34800867977875	4.42003603473447	4.32193419665075	4.54850420466406	-2.36505934862492	7.12960770765901e-11	5.58282009926799e-09
Merged-chr5-142448252-4	chr5	142448159	142448359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-15672.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	6.23045944056525	6.55091257159343	6.19354037938122	6.44915431486992	6.01389871983811	5.82800333902778	5.95349100365295	5.83528261769956	-0.705398539562586	0.00325089540798115	0.0339937541126326
Merged-chr11-114209076-4	chr11	114208982	114209182	+	955.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10824.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	4.69325464880153	4.45488364501744	4.77256150788115	4.71332350578255	5.03419961076961	4.55783579474837	4.9898584343705	5.24008330491236	0.645232261884796	0.0664880802402186	0.27483512971027
Merged-chr8-72548398-4	chr8	72548299	72548499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027485)	promoter-TSS (NM_027485)	-89.0	NM_027485	70625.0	Mm.235885	NM_027485	ENSMUSG00000045248	Med26	5730493L18Rik|AI414941|AW495270|Crsp7	mediator complex subunit 26	protein-coding	8.6865064697542	8.82376838067077	8.74753873710416	8.7744544278272	8.56671754355926	8.76570875812543	8.69536514785214	8.77078582095398	-0.0769321305345716	0.595366215192883	0.823889334925232
Merged-chr1-127976704-4	chr1	127976599	127976799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 12 of 20)	intron (NM_001285945, intron 12 of 20)	107926.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	5.42153610276477	5.45420895796056	5.90419190958806	5.98755890862783	5.58628756554571	5.40369647985578	5.9351891689889	5.53632123817972	-0.165326095079769	0.584406797894555	0.817596016641525
Merged-chr11-5762275-6	chr11	5762184	5762384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361588)	promoter-TSS (NM_001361588)	92.0	NM_001361588	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	6.94260792479034	6.85621546872531	7.29396831953678	6.72889310610837	6.74223634997057	7.40952292276168	6.72740109762492	7.1317039174072	0.0881951355197827	0.719333547164606	0.887896551757179
Merged-chr10-59616702-4	chr10	59616608	59616808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033259)	promoter-TSS (NM_001033259)	-16.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	7.24622793503659	7.22727167758389	7.22603485675175	7.09961261011658	7.14247262494036	7.07115213146929	7.30308860997443	7.1196739183614	-0.0436984079667533	0.810837902007868	0.926854276252049
Merged-chr11-115001668-4	chr11	115001530	115001730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134158, exon 1 of 4)	5' UTR (NM_134158, exon 1 of 4)	250.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	6.20144197509749	6.21026398337648	5.80282059548724	6.21031138054687	5.81663559109984	5.72607789210879	6.37941828015506	6.48565308904968	0.0292791281477356	0.918351447773438	0.969942541526057
Merged-chr6-125256746-4	chr6	125256636	125256836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8789.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	5.74286456684437	5.3992577561783	5.63644953521972	5.81284754165034	6.41038320185137	5.99502820727936	6.14424821129714	5.95256900625402	0.767060415774264	0.0039820749807388	0.0399320490787023
Merged-chr9-61373691-3	chr9	61373639	61373839	+	989.866699	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083928, intron 1 of 19)	CpG	1373.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	3.28688987249793	3.23166390842015	3.70169265533027	3.17442151673258	3.58324468149252	3.27112551199885	3.44479907116569	3.40227938203138	0.272985942476963	0.615675520472944	0.834583935549024
Merged-chr17-24672378-4	chr17	24672273	24672473	+	924.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348231, intron 1 of 11)	intron (NM_001348231, intron 1 of 11)	2686.0	NM_183149	213753.0	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	5.06224615918231	5.54056158163576	4.60985188236096	4.35991944251803	5.16474398479413	5.23623763541428	4.71635397144008	4.46446091366173	-0.0777097232903987	0.861599064282156	0.947761633747598
Merged-chr11-98917673-4	chr11	98917589	98917789	+	947.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025779, intron 9 of 11)	intron (NM_001025779, intron 9 of 11)	9538.0	NM_011799	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	4.07404610403961	4.18534554588914	4.21203150479535	4.27011934555752	4.31715189812346	4.14856750968	3.73381529824253	4.11961399957077	-0.220596572847662	0.607916069313055	0.830283203337722
Merged-chr2-117105497-4	chr2	117105392	117105592	+	883.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-15579.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	4.43378953824875	4.16816146347981	4.93225396007796	4.87760928069486	4.3925653093594	4.42608970297484	4.17888774236064	4.55594330507659	-0.570372679396294	0.171063054287966	0.464162889513089
Merged-chr4-129883082-4	chr4	129882907	129883107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-23219.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	5.83072681767684	5.65827203134345	5.61031122672562	5.38872003808772	5.69662436760085	5.88783202313352	5.63436314437278	5.8048512234173	0.23687591322437	0.377895644094127	0.680571668420308
Merged-chr1-152832532-4	chr1	152832419	152832619	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 11 of 15)	RSINE1|SINE|B4	32366.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	5.66071447616148	5.41841552324759	6.01475543590774	6.0364812175599	5.14969144375482	5.19915037598508	6.0578225197699	5.46572199839952	-0.489778720831723	0.15268254611157	0.437019098828833
Merged-chr17-35779168-3	chr17	35779077	35779277	+	847.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045459, intron 2 of 2)	intron (NR_045459, intron 2 of 2)	6727.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	3.20711451461304	2.92423085025903	3.07119906612029	3.41259078588839	3.57197277621613	3.32146194437722	3.87599967723913	3.54653295566717	1.41012691768996	0.0191240060670976	0.124180597009249
Merged-chr5-28311069-1	chr5	28310969	28311169	+	671.5	f0_c57.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-6120.0	NM_028234	381626.0	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	3.00311023830437	2.78455569825883	3.0718963133758	2.78055858207022	3.5983143010002	3.54182387247529	3.12547995788737	3.61025769985307	2.25671406467355	0.000108227516000205	0.0021681751650376
Merged-chr1-118389981-4	chr1	118389882	118390082	+	891.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 1 of 39)	intron (NM_001359330, intron 1 of 39)	924.0	NM_001359334	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	4.13534867898495	4.17311931212946	4.39870531781584	4.22062052977848	4.08258520646079	4.35661418731173	3.96565383939455	4.5090153447967	0.0164944988052421	0.968147224357921	0.988690836191857
Merged-chr6-84031467-4	chr6	84031364	84031564	+	846.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310152, intron 1 of 53)	MTD|LTR|ERVL-MaLR	12078.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	4.1140642140241	4.07726061693078	4.20779365215823	4.20681842095123	4.06445926049447	4.28722232369183	4.23295946273754	4.3725399613561	0.202798305071428	0.609368393093054	0.830967173169002
Merged-chr1-151963585-4	chr1	151963503	151963703	+	876.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 3 of 5)	intron (NM_197990, intron 3 of 5)	126717.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	3.99468340720042	3.47846514798658	3.65845837714328	3.91652178891206	3.84090706158136	3.71929854302615	3.84501906669754	3.48035532321722	-0.14681190745941	0.76662291080075	0.908660493187862
Merged-chr9-15717568-3	chr9	15717517	15717717	+	940.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172289, intron 1 of 10)	intron (NM_172289, intron 1 of 10)	7879.0	NM_172289	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	3.97776300321825	3.68247454284832	4.39361999208234	4.19916748621639	3.77479938010748	3.76460924891061	3.80678455566729	4.28004928675922	-0.448159222584024	0.356579546448597	0.662982930717674
Merged-chr4-138068314-3	chr4	138068126	138068326	+	999.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256195, intron 4 of 34)	intron (NM_001256195, intron 4 of 34)	70292.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	3.59906502988405	3.63898588447274	3.45725538390391	2.92288999297786	4.19256341374675	4.78236563826253	4.67859436652979	4.36192405865984	3.18815181367279	1.12770533234996e-09	7.19255715513783e-08
Merged-chr10-78096801-3	chr10	78096700	78096900	+	743.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27432.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	3.5126455724358	3.91289410436787	3.5729480684346	3.43008803224689	3.63203370187787	3.7496556435117	4.18606587377469	3.62823947277023	0.601622647300407	0.233575976994049	0.543270413569238
Merged-chr14-54410330-6	chr14	54410238	54410438	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253680)	promoter-TSS (NM_001253680)	-866.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	4.99371205767095	5.49585036595995	5.65224350481363	5.41779317819632	4.91872406429511	4.89737700379298	4.89702752539425	4.46995601080117	-1.14684432812801	0.000877052483999146	0.0121166567218787
Merged-chr16-55907249-4	chr16	55907132	55907332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028815, intron 10 of 10)	intron (NM_028815, intron 10 of 10)	-11953.0	NM_001134457	385658.0	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	5.48392325104757	6.42866062846536	5.31748605292635	5.83945586029573	6.21752497424042	6.08528197570584	5.87958158775718	5.78741569087348	0.251078568788452	0.446577637480879	0.732198872647629
Merged-chr19-47127731-3	chr19	47127639	47127839	+	822.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011053, intron 30 of 35)	(TG)n|Simple_repeat|Simple_repeat	10555.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	4.15958291374916	4.01894829773988	3.78147302856627	3.95767633823217	3.70961275571122	3.72346302283654	3.87105944050541	4.15754975005881	-0.307871671859604	0.498947683717533	0.768032637255472
Merged-chr19-46135435-4	chr19	46135344	46135544	+	918.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008852)	TTS (NM_008852)	3545.0	NM_007703	12686.0	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	4.21509548938761	4.14140129527475	3.65843623559128	3.70317117499801	4.40803844546887	3.95721947858591	4.06778720119826	3.88719542127136	0.421087127734862	0.374555356358853	0.677866150782273
Merged-chr9-106299455-4	chr9	106299340	106299540	+	898.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 7 of 10)	PB1D10|SINE|Alu	18379.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	4.09512017856403	4.51690775917094	3.77838971209074	3.9789363961962	4.37043290600916	4.0152053007512	3.98160186262865	3.99590493388935	-0.0273737352767519	0.952817221631257	0.983276598943455
Merged-chr8-114439547-4	chr8	114439456	114439656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019573)	promoter-TSS (NM_019573)	-96.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	8.62482490467902	8.89606417067263	9.02700404483961	8.75044351115124	8.9098427694504	9.11000743907349	8.9766998303374	8.6530154762536	0.112220690547097	0.510187926814199	0.774557190395275
Merged-chr2-73037444-3	chr2	73037341	73037541	+	798.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56995.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	3.9870834466822	3.64031568349734	3.94008733187174	3.41066699323536	3.62785425186139	3.66935213877843	4.05880650479519	4.4805095363699	0.679408088119361	0.196564782803091	0.49766951412921
Merged-chr10-75676464-4	chr10	75676350	75676550	+	906.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 29 of 36)	MIR3|SINE|MIR	-32442.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	4.05131624803091	3.84717016939287	3.74826230204587	3.97102061407787	4.10897560301793	3.97812230067803	4.07786827981877	3.85543527456748	0.271829705858155	0.528155337543387	0.784818036596328
Merged-chr17-21488956-4	chr17	21488872	21489072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013843)	promoter-TSS (NM_013843)	-16.0	NM_013843	24132.0	Mm.42140	NM_013843	ENSMUSG00000057409	Zfp53	D030067O06Rik|KRAZ1|Zfp-53|Zfp118|zfas8	zinc finger protein 53	protein-coding	7.58580947604692	7.43879886731574	7.3224318610278	7.89787063500252	7.67297752886978	7.33796651958008	8.00885629697019	7.73153497876421	0.1580055450652	0.471005764718505	0.749675166007454
Merged-chr11-21403064-4	chr11	21402961	21403161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31794.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	5.28700085668423	5.2625126969563	5.51942908690615	5.54165220165895	5.34854389072454	5.69209856039605	5.4651039604459	5.25215760958426	0.044918401869877	0.87680082296005	0.953797102035264
Merged-chr6-53996785-3	chr6	53996692	53996892	+	966.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110484, intron 2 of 3)	intron (NR_110484, intron 2 of 3)	18101.0	NR_110484	320178.0	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	4930590G02Rik	RIKEN cDNA 4921529L05 gene	ncRNA	3.79337017295939	3.49094201504578	4.41399387190223	3.44146002576578	4.52986298390435	4.08002753975079	3.98549716493959	3.84719207488189	0.777598402475008	0.151723602661613	0.435412422442889
Merged-chr1-72583222-4	chr1	72583124	72583324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018817)	promoter-TSS (NM_018817)	-27.0	NM_018817	54380.0	Mm.274232	NM_018817	ENSMUSG00000039354	Smarcal1	6030401P21Rik|AI851716|Mharp	SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1	protein-coding	8.56743326992072	8.58594957202956	8.35185602663041	8.75090415410735	8.28333806684821	8.5940965208201	8.4870736537508	8.22503418750499	-0.220266101290716	0.19998073189015	0.501883806332732
Merged-chr2-91481000-2	chr2	91480900	91481100	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 15 of 37)	intron (NM_172668, intron 15 of 37)	23469.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	3.41175182852184	3.70444168651963	3.5290267244303	3.30311123013735	3.53996779269732	3.46468318481088	3.56922514293193	3.95036589376643	0.497020023836574	0.330491000239393	0.641871774561785
Merged-chr3-96223111-4	chr3	96222998	96223198	+	875.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178214, exon 1 of 1)	3' UTR (NM_178214, exon 1 of 1)	2026.0	NM_178214	319190.0	Mm.439791	NM_178214	ENSMUSG00000068854	Hist2h2be	AV127319|H2b-613|T25626	histone cluster 2, H2be	protein-coding	3.30669505315782	3.49140744500687	3.73439659686812	3.39349135511613	3.56666628453564	4.00657411199137	3.9101766994036	4.16977942011676	1.3216325609756	0.00817933821623859	0.0681729642732607
Merged-chr6-117909263-2	chr6	117909163	117909363	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166428, intron 1 of 3)	B1_Mm|SINE|Alu	1459.0	NM_001166429	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	2.53141692118537	2.43377793509202	2.46850056074582	1.95491974710537	2.28482294216252	2.20358757447234	2.17537263669097	2.75594316667859	0.0174069237138024	0.983996440364652	0.994232698662932
Merged-chr10-7271626-4	chr10	7271572	7271772	+	937.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59435.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	4.49340974833285	4.48090018734047	5.14737704092221	5.21272079159554	4.09233249466333	4.10809144180157	4.51484375536887	4.15270592177522	-1.49851191733615	0.000542381260241202	0.00824389402577589
Merged-chr1-161251576-2	chr1	161251470	161251670	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_007453)	promoter-TSS (NM_007453)	-360.0	NM_001303408	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	5.22264946190738	5.45776835191281	4.95742037895464	5.24548563035225	5.93141739352276	5.73034949714043	5.91116931052163	5.55185445284104	0.953311877861309	0.000857115607960148	0.011885570204363
Merged-chr5-117140522-3	chr5	117140410	117140610	+	764.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	6922.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	3.06829211384047	2.80290877169791	2.95725393749273	2.93751145537951	2.73801221443037	2.87540098395597	2.82570774994776	2.83378159837061	-0.581630772333523	0.342989770218011	0.651708946753898
Merged-chr16-17911394-4	chr16	17911289	17911489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022408)	promoter-TSS (NM_022408)	-41.0	NM_001081633	27886.0	Mm.256480	NM_022408	ENSMUSG00000003527	Dgcr14	AI462402|D16H22S1269E|Dgcr1|Dgsi|ES2|Es2el|Ess2	DiGeorge syndrome critical region gene 14	protein-coding	7.53474072249091	7.90509399149187	7.31952573174234	7.70686137200896	7.91528172074708	8.05160733562077	7.91299766920499	7.95268422049234	0.411133516003264	0.0279665348370418	0.159979907029317
Merged-chr10-12729194-3	chr10	12729103	12729303	+	945.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 13 of 73)	intron (NM_011682, intron 13 of 73)	132532.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	3.60118802243325	3.46422796817256	3.49536654853975	3.82587409104006	3.17992363063903	3.29617192173891	3.53535323061134	3.69755856723562	-0.580577653155962	0.282246154260688	0.594449018053069
Merged-chr2-116972754-4	chr2	116972652	116972852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72600.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	5.70922437617999	6.14507332741897	5.25916484500377	5.45837497258394	5.87946524768923	6.05044768004431	5.9722689374391	5.45493991367423	0.282979820221994	0.372332061522769	0.676146132440278
Merged-chr2-37358886-4	chr2	37358803	37359003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026176, intron 1 of 3)	intron (NM_026176, intron 1 of 3)	429.0	NM_026176	67466.0	Mm.30709	NM_026176	ENSMUSG00000009030	Pdcl	1200011E13Rik|AW108059|PhLP1	phosducin-like	protein-coding	7.66181634954349	7.78510640892386	7.72056485395728	7.75070191875384	7.59742251464306	7.55953379986507	7.88177584573425	7.54384905471904	-0.104219226384746	0.547176488418672	0.796732576490316
Merged-chr14-70024896-4	chr14	70024796	70024996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 4 of 6)	intron (NM_028560, intron 4 of 6)	-52549.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	7.66779137542242	7.83214885551761	7.79597784682965	7.55252516364982	7.66322698299474	7.74204417337562	7.70434533827388	7.46532673599998	-0.0820179677902468	0.641143338436457	0.848625403955452
Merged-chr1-85736618-4	chr1	85736515	85736715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177055)	promoter-TSS (NM_177055)	-9.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	5.7607506234966	5.59584960997019	5.44397905042914	5.75569783233092	5.5266804552771	5.52845154778412	5.47528751594116	5.97198417397357	-0.023670040936982	0.932810251795745	0.975787739000784
Merged-chr5-36757255-4	chr5	36757153	36757353	+	765.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8574.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	3.86520501439126	4.04892212019158	3.91773328441514	3.70337626723259	3.98168421392458	4.31822348358797	3.90140828231815	4.01340165564621	0.489057057120036	0.26386305292759	0.575926770059883
Merged-chr5-105526755-3	chr5	105526665	105526865	+	946.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 1 of 3)	intron (NM_133897, intron 1 of 3)	7294.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	3.79820692848862	3.92800064530976	3.71094715738625	3.59902366177936	2.85717019192523	3.11898509578253	3.06990313312615	3.00309989083132	-3.27745674828818	2.22990118268828e-06	7.19828282460632e-05
Merged-chr6-127446752-4	chr6	127446658	127446858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346513)	promoter-TSS (NM_001346513)	-82.0	NM_001346513	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	5.79360243273367	5.83918866127052	5.60123633375077	5.95301150508207	6.48249341403987	6.41758390445103	5.93215645787852	6.10662306257867	0.692619377597269	0.00810280609324259	0.0678209824683577
Merged-chr3-75957011-4	chr3	75956923	75957123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175193)	promoter-TSS (NM_175193)	-74.0	NM_001291069	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	8.31062828284172	8.28852371225553	8.42431638102257	8.74217368261411	8.05489924123174	8.21533187778424	8.60026964800344	8.35051984398294	-0.181369602042777	0.347937085462939	0.655787470042804
Merged-chr17-65672880-2	chr17	65672780	65672980	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 5 of 6)	RLTR13D5|LTR|ERVK	-30676.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	3.45812239094781	3.32390913520779	3.45862948933347	3.08416199214056	3.08116768051923	3.21540206988391	3.3373187358192	3.55602298180353	-0.0899210830286546	0.872713496587502	0.952272557441005
Merged-chr8-85034873-4	chr8	85034754	85034954	+	940.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2061.0	NM_145390	212999.0	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	4.53392834888845	4.52673976501613	4.39808152606616	4.51726163473617	4.99372330574036	4.90598165159878	4.71192000279535	4.76770116786327	0.759064282657678	0.0257182877378905	0.151289421726885
Merged-chr2-150782545-4	chr2	150782450	150782650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-4246.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	6.77076747684637	6.61345330724334	7.07748468639435	6.96666142324695	6.25400273528281	6.1745312161689	6.77811984622869	6.4365228755403	-0.635891456491944	0.00811110427966894	0.0678576372934888
Merged-chr10-60252753-4	chr10	60252644	60252844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24884.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	7.73619943181102	7.84487000125609	8.03995714497138	8.25360807463808	8.17783868033043	7.79265159061176	8.00806585355091	8.11081425966501	0.0529269482841661	0.782209513999191	0.915271670644054
Merged-chr15-59439557-4	chr15	59439468	59439668	+	987.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 3 of 4)	ORR1E|LTR|ERVL-MaLR	65370.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	5.72773567944034	5.45650872064407	5.77268127431184	5.7524733185567	4.88613679661485	5.05033836274133	5.08048664433794	5.45104520704951	-1.00133404488006	0.000962855495971584	0.0130443645503923
Merged-chr1-40230509-4	chr1	40230435	40230635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008362, intron 1 of 10)	intron (NM_008362, intron 1 of 10)	5455.0	NM_008362	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	5.12300752558501	4.85749765445545	5.83591608482871	5.985461010997	4.85116792536143	4.72241939139974	5.22724599944231	5.12034166159471	-1.00100964985098	0.0112373774464494	0.0857304704459617
Merged-chr19-5803671-4	chr19	5803557	5803757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002847)	promoter-TSS (NR_002847)	-985.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	7.85760693122277	7.88878147185238	7.70348630089339	7.67832182273826	7.92064958540971	7.96871769365672	7.47945246598347	7.77833879043055	0.0266993450463398	0.884573834012892	0.956624037971431
Merged-chr9-65790268-3	chr9	65790157	65790357	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 2 of 9)	intron (NM_172536, intron 2 of 9)	37307.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	3.67210365137441	3.1624327567245	3.43924073448116	3.65882994772953	3.23877996351823	3.0548674747559	3.00973342086521	3.08589824820497	-1.50158657361589	0.0122217708127543	0.0911051941870929
Merged-chr5-75156313-4	chr5	75156252	75156452	+	877.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083316, intron 1 of 22)	CpG	186.0	NM_001083316	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	4.41239291988432	4.05742930357905	4.16641881255934	4.7319269583248	4.77339826041343	4.67365552281668	4.80761877960266	4.65507768500819	0.735233965201703	0.0711037379614735	0.285985927804697
Merged-chr6-89043065-3	chr6	89042963	89043163	+	995.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53047.0	NR_134978	232217.0	Mm.281744	NM_175017	ENSMUSG00000055403	4933427D06Rik	-	RIKEN cDNA 4933427D06 gene	ncRNA	5.02689141625376	4.81776810280469	5.62578721813531	5.69610960120208	3.68709136185262	4.29318539413464	4.36120896686826	4.52548184466353	-2.38952822081644	2.00835965497408e-07	8.09932191962605e-06
Merged-chr11-69396134-4	chr11	69396028	69396228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045525)	promoter-TSS (NM_001045525)	337.0	NM_030083	78304.0	Mm.45683	NM_030083	ENSMUSG00000059278	Naa38	1500034E06Rik|Lsmd1	N(alpha)-acetyltransferase 38, NatC auxiliary subunit	protein-coding	6.47252974209878	6.72624273851795	6.55714497730606	6.2749608571682	6.65710623757633	6.78049592409218	6.6605526062223	6.43407088267736	0.191434213383467	0.392766427494805	0.692117979418531
Merged-chr14-73410296-4	chr14	73410179	73410379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24990.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	6.02210342868373	6.01159383399174	5.562395076559	5.64833049160375	5.78696654324576	5.90273777600724	6.0123474733204	5.79746464656451	0.0903001565385015	0.733086801732048	0.89437268327795
Merged-chr1-136675108-4	chr1	136675003	136675203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-8293.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	6.16751341300865	5.91324264145568	6.44036046191325	6.10746634065038	5.98065090324012	6.56533320138247	6.03220426521825	6.60300048941729	0.233203082888448	0.390893255819459	0.690835283823048
Merged-chr13-40953416-4	chr13	40953314	40953514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133219, intron 1 of 2)	MER20|DNA|hAT-Charlie	35780.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	6.15117179524416	6.3197125899737	5.93912152383185	6.27534870254484	6.13867643865093	6.26711392673059	5.78795076374198	5.70695849989243	-0.290971461498462	0.264410548987474	0.576455127446606
Merged-chr5-80855225-4	chr5	80855110	80855310	+	954.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-165361.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	3.94212321726352	3.89895795608426	4.45555280743833	4.27960611106824	4.65380834164681	4.46329488291904	4.27231293571966	4.1012556080538	0.546042706213846	0.208542920444243	0.512901300380109
Merged-chr14-73237923-4	chr14	73237834	73238034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175116)	promoter-TSS (NM_175116)	43.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	6.69821151185233	7.14037490084567	6.91675300193489	6.58000792722624	6.99440244214188	7.44932973566316	6.97118730261235	7.0620974305822	0.395006329555857	0.083639695595055	0.314439036107201
Merged-chr2-150909723-4	chr2	150909619	150909819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163476, exon 1 of 5)	exon (NM_001163476, exon 1 of 5)	125.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	7.54981251236832	7.9761929162019	8.24929636450268	7.99863995842189	7.91708033722586	7.95720346740884	8.06467147627299	8.01459289252418	0.0252211339307173	0.894587651143284	0.960637465802637
Merged-chr10-94545682-4	chr10	94545586	94545786	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	-5186.0	NM_001359761	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	4.92843196707019	4.58529599329223	4.40429448685076	4.58240272665332	4.9132022043144	4.38631231024819	4.28993316332135	4.6907194956287	-0.0607508457747548	0.877540087930164	0.954199567096042
Merged-chr18-60774528-4	chr18	60774447	60774647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020600)	promoter-TSS (NM_020600)	-49.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	7.30995838111942	7.55021541170402	7.33160523640526	7.15555209207898	7.055093881238	7.31211401206139	7.25411335865967	7.10604820048917	-0.213408871913184	0.270519361510168	0.582339622429786
Merged-chr17-34604007-7	chr17	34603894	34604094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019403)	promoter-TSS (NM_019403)	-433.0	NM_019403	54197.0	Mm.274542	NM_019403	ENSMUSG00000015478	Rnf5	2410131O05Rik|AA407576|NG2	ring finger protein 5	protein-coding	8.60308872686043	8.76917249895269	8.52855847436285	8.28384168910729	8.67017252196987	9.03589169853814	8.54184090502162	8.59894119345413	0.214957156642816	0.24641455300458	0.557673692994975
Merged-chr14-57387165-4	chr14	57387058	57387258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030004, intron 1 of 7)	intron (NM_030004, intron 1 of 7)	11325.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	6.00621205335581	5.81815734795039	5.89780327705991	6.12016376237253	6.11713633450146	6.072763551419	5.50142928631224	5.7225732410398	-0.139035309343729	0.610573896874334	0.831814034830111
Merged-chr13-36116866-3	chr13	36116767	36116967	+	651.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024274)	promoter-TSS (NM_024274)	490.0	NM_201358	380840.0	Mm.390576	NM_201358	ENSMUSG00000046573	Lyrm4	BC034664|Gm903	LYR motif containing 4	protein-coding	3.22612011764587	3.00881365116003	3.5230847542449	3.26985754367564	3.1411840366036	3.02105057674761	2.97281711887008	3.04608830529317	-0.859079688706305	0.145749201302906	0.425521254242958
Merged-chr8-70872893-2	chr8	70872795	70872995	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026964, intron 1 of 4)	PB1D10|SINE|Alu	595.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	2.59783412651291	2.859716779372	2.73702971206112	2.33660375160622	2.97430330610681	2.97337467529821	2.79111808356368	2.80000931349305	1.17366943434423	0.0884292518191064	0.324498928454512
Merged-chr3-107760287-4	chr3	107760199	107760399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001113530, exon 1 of 9)	5' UTR (NM_001113530, exon 1 of 9)	170.0	NM_001113530	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	6.39358394278217	6.56326334571583	6.83730739977542	6.21213743315339	6.68987675955831	6.89125827018306	6.36197175720616	6.42618247950691	0.145560518930948	0.560197295941423	0.80427373689569
Merged-chr18-56701000-4	chr18	56700892	56701092	+	946.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6821.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	4.43928519698563	4.50587355793814	4.8243952319996	4.88042859899191	5.35359269452737	4.66935302215231	5.0347817583752	4.9609154778942	0.701258730436799	0.0572178727461572	0.25070550718367
Merged-chr12-32207058-4	chr12	32206960	32207160	+	838.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146200, intron 1 of 10)	intron (NM_001146200, intron 1 of 10)	1278.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	4.53136386621329	4.33600311613262	4.32550960878605	4.80290560862536	4.193882688199	4.4074651417671	4.2612776929021	4.23001918660451	-0.617084386385555	0.121037707172741	0.385267103069873
Merged-chr18-53744699-4	chr18	53744608	53744808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178686)	promoter-TSS (NM_178686)	-161.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	8.15795280998527	8.43495997014927	7.98426040689696	8.16849558184887	8.60432176156698	8.63725462251352	8.49651033600317	8.12209546230622	0.360070115878482	0.0534104853259218	0.241209627245339
Merged-chr19-34521602-4	chr19	34521503	34521703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	5871.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	6.52838355448488	6.70418550105331	6.62630929748048	6.8735312868468	6.85021250099185	6.54652032285738	6.31724159012195	6.65223506593275	-0.122226664099758	0.590707462676461	0.821188638407585
Merged-chr10-57793153-4	chr10	57793051	57793251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1393.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	6.33825608221018	6.47759268795845	6.58167666902321	6.46756884520716	6.82418343874022	6.55386050878622	6.57903131018943	6.56114863449251	0.254153581512683	0.230606707781919	0.540123555551471
Merged-chr3-121184689-3	chr3	121184578	121184778	+	968.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12983.0	NM_025637	66568.0	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding	3.50396154229443	3.78827816232614	3.5043901163744	4.06790774294193	3.59359647782913	3.49260043121031	3.70905673698309	3.81934658319294	-0.293617155487822	0.569440917433841	0.809366519988776
Merged-chr18-37644256-4	chr18	37644176	37644376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175770)	promoter-TSS (NM_175770)	-72.0	NM_175770	24074.0	Mm.236009	NM_175770	ENSMUSG00000051316	Taf7	55kDa|AI607308|BB007175|TAFII55|Taf2f	TATA-box binding protein associated factor 7	protein-coding	8.40026527427138	8.41716595323179	8.46892383599718	8.58837345168086	8.77439704033618	8.78964659309022	8.49821528935253	8.15002286989495	0.135249460605078	0.468252064404222	0.747580364545871
Merged-chr9-20493580-4	chr9	20493506	20493706	+	818.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110309)	promoter-TSS (NM_001110309)	-860.0	NM_001110309	235028.0	Mm.297660	NM_146221	ENSMUSG00000059475	Zfp426	2900057C04Rik|KRAB1|Zfo61|Zfp68-rs1|Znf426|mKIAA4237	zinc finger protein 426	protein-coding	4.01082752280392	4.07447938364647	4.33371781690298	4.28709431258038	4.15940590697788	4.41946587161391	4.18684401223802	4.0603089790247	0.047728142076187	0.906838128926643	0.965432195798165
Merged-chr4-3692988-4	chr4	3692890	3693090	+	974.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	ORR1G|LTR|ERVL-MaLR	14869.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	4.70249994499379	4.49861744683716	4.23422324698651	4.53451124470327	5.14603016390725	4.95332565679437	4.89633732670304	5.04350217665104	1.05667563546322	0.00203228074216852	0.0236829913141475
Merged-chr11-78828507-3	chr11	78828412	78828612	+	672.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001076681, intron 1 of 3)	ID_B1|SINE|B4	1917.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	3.16772229195266	3.04828941796772	2.6499447538656	2.9629411081652	3.06641904208097	3.10599617064063	2.98620200642915	3.054928404089	0.344505806419302	0.574312265234127	0.812234948580339
Merged-chr7-114193885-4	chr7	114193798	114193998	+	883.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60782.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	4.19293328649447	4.09687535736279	4.14947797843283	4.36148531346118	4.03726503209684	3.9095160656889	4.13128576985248	3.95382621826397	-0.528217960595315	0.204138261801166	0.50737576212243
Merged-chr8-25052127-4	chr8	25052016	25052216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 10 of 11)	intron (NM_031257, intron 10 of 11)	-13154.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	6.78494498223712	6.83714040309376	6.66803339319768	7.10682094110301	6.57910906488462	6.7487786629124	6.64937891993163	6.78131636700326	-0.268027282492357	0.208711619040836	0.513022375312381
Merged-chr2-129310023-4	chr2	129309929	129310129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010554)	promoter-TSS (NM_010554)	-57.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	6.29046592293526	6.76236981485687	6.58879572051244	6.20106728730509	6.68877788296284	6.48851573361576	6.70121724529402	6.45298377268548	0.176712644339205	0.456650553312063	0.739970171064957
Merged-chr6-88189731-3	chr6	88189625	88189825	+	877.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4166.0	NM_001355253	14461.0	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	3.69941593077649	3.89235807586179	3.36560452674943	3.63589111883509	3.36717425114352	3.6600339694475	3.41538613700452	3.59576815083919	-0.494875776741108	0.333051005631823	0.643946257670112
Merged-chr13-94285406-4	chr13	94285281	94285481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029153)	promoter-TSS (NM_029153)	-100.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	6.32595851074471	6.0607576748307	6.23451866118109	6.25312686699785	6.36252124007662	6.18054180764171	6.32971428539024	6.2107197612598	0.0855784291225201	0.70237354989183	0.880151503501712
Merged-chr17-63895369-4	chr17	63895288	63895488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286415, intron 1 of 17)	intron (NM_001286415, intron 1 of 17)	17322.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	7.01467688537454	7.05830094896495	7.49052287723215	7.1394304715104	6.98516465399982	7.08668557257257	7.32452495171014	7.38489799461658	0.0206760178479068	0.921496018913635	0.970886721487516
Merged-chr8-36252189-2	chr8	36252092	36252292	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2676.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	3.52459363830272	3.37953660456096	3.57223836218426	3.52546285762266	2.93047112072327	3.31219121843309	2.84202667529617	3.06777399928026	-1.8440097428749	0.00262142597017737	0.0287687476793498
Merged-chr2-156295904-3	chr2	156295795	156295995	+	925.9111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 13 of 17)	intron (NM_172674, intron 13 of 17)	-16578.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	3.71456488682893	3.8986809017175	4.23395561605355	4.03300093001512	3.69975444747046	3.77571770919475	3.5812793043972	4.34195021101219	-0.275993579150614	0.581248839426962	0.816214817149224
Merged-chr11-103262593-4	chr11	103262494	103262694	+	986.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	4807.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	5.02964044677213	5.31759061858531	5.19274071401425	4.87062222520755	5.30473629571293	5.17020765685324	4.89887021416943	4.95600150693045	-0.0012748497297094	0.996885690636558	0.998780003572709
Merged-chr16-38396315-4	chr16	38396205	38396405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_134102, exon 11 of 11)	3' UTR (NM_134102, exon 11 of 11)	34115.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	8.05403401622898	8.14464859871518	7.94963209508312	8.00910634480748	7.70171181332018	7.98874402961468	7.66922289167311	7.42122421330791	-0.431428211970126	0.0177601609475931	0.118114204775309
Merged-chr2-36236603-4	chr2	36236507	36236707	+	918.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 2 of 10)	intron (NM_008969, intron 2 of 10)	6181.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	4.98009529915788	4.30518646058184	4.94914583931691	4.76093247721018	4.84710238426303	4.75350431877175	4.75406235651149	4.61683551976132	-0.0421068142266662	0.9084002869321	0.966039998613106
Merged-chr19-6856921-4	chr19	6856828	6857028	+	940.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081291, exon 6 of 27)	exon (NM_001081291, exon 6 of 27)	1283.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	4.77160606349039	4.68119450884208	4.70020960765689	4.17260695664653	4.94920224592609	4.54073566287644	4.39013988075312	4.65942257189028	0.161520397306565	0.685617743367757	0.871503569033583
Merged-chr16-57215714-4	chr16	57215566	57215766	+	918.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 2 of 17)	intron (NM_026254, intron 2 of 17)	-14195.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	3.9990402973099	3.45446697843398	4.20991925293812	3.80174980242172	3.73794232230612	3.81096351176368	4.02625241817476	3.95061674663307	-0.0117192961244841	0.980794369476462	0.992958914830175
Merged-chr5-150840815-4	chr5	150840709	150840909	+	957.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111798.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	5.17843105791751	4.88346008888708	5.46434623714817	5.45959652080741	5.41251496927536	4.71699655366269	5.12172383385132	5.29749408904343	-0.185683092685348	0.592284954519178	0.822045146560973
Merged-chr17-34262633-2	chr17	34262534	34262734	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207105)	promoter-TSS (NM_207105)	-593.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	3.22865769880629	2.88473195628871	3.59251103195337	2.93923684273822	3.09271942064004	3.21731579191086	3.48282891983548	3.39551657134807	0.429133344380456	0.482834888555536	0.757421686487144
Merged-chr7-89395568-1	chr7	89395468	89395668	+	714.0	f0_balb.idr	intron (NM_001360746, intron 1 of 14)	L1MA9|LINE|L1	8654.0	NM_001360746	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	3.36518563725756	3.09239135643994	3.36569620317759	3.19490125493469	2.99025636958478	2.85080579621799	3.1956611800564	2.96174520903162	-1.01403341653288	0.0894085775269583	0.32641528543909
Merged-chr11-44373029-4	chr11	44372902	44373102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27061.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	4.91147656215352	4.76552199137124	4.87096679794193	4.62255255585769	5.85079691587446	5.94413244876859	5.46574764263794	5.51583756529256	1.69818835513749	1.71475182760474e-08	8.69952390143106e-07
Merged-chr19-29675651-4	chr19	29675538	29675738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22303.0	NM_029993	77836.0	Mm.138437	NM_029993	ENSMUSG00000024806	Mlana	A930034P04Rik|Mart1	melan-A	protein-coding	6.10809152511218	5.93384253959882	5.45128555882202	5.79199293202149	5.66096621117927	5.87724631591517	5.32914643128461	5.61993259382283	-0.341307913653563	0.237095363302335	0.547279017452248
Merged-chr2-174069825-4	chr2	174069718	174069918	+	799.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7233.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	4.45758843249267	4.31038234769824	4.86547192952291	5.07228988578196	4.34384407534308	4.05672390525252	4.77697056181175	4.41116753658703	-0.66376882028992	0.127604171674137	0.39745918674923
Merged-chr8-111562035-4	chr8	111561926	111562126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	23683.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	5.89012105691279	6.0042665088408	6.25243545824014	6.02455125571255	5.86841686000951	5.94581979707003	5.74001676424367	5.86351423947078	-0.303944246326014	0.214001418634959	0.519664539336032
Merged-chr10-39417804-4	chr10	39417720	39417920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	48021.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	6.02497986929342	6.06077020601253	6.49650111923768	6.69142705289593	5.90860102394588	5.78138186393015	6.7906512459568	6.23120533149347	-0.178640710774234	0.572272793796512	0.811171841437827
Merged-chr3-107696636-4	chr3	107696554	107696754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357112)	promoter-TSS (NM_001357112)	-94.0	NM_145542	229709.0	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	8.14654136743372	8.3345148882794	8.1287915271981	8.35189660033191	8.41502249346272	8.16403625059872	8.37995999214101	8.49712494882775	0.154444359556716	0.343678570632694	0.652283741246884
Merged-chr1-135266084-4	chr1	135265992	135266192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 7 of 9)	intron (NM_001159624, intron 7 of 9)	-7620.0	NM_007921	13710.0	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	6.93100303093223	7.23954752050323	7.16891866193571	7.02972804836899	6.68315442709046	6.98620219543372	6.8575594535427	6.61894555914676	-0.429241786435335	0.0350686124998227	0.185521788714748
Merged-chr9-20898618-4	chr9	20898525	20898725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016876)	promoter-TSS (NM_016876)	-35.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	6.19164583275444	5.94965662930073	5.42849646213266	5.77461760277297	6.02253074524666	6.0073640422122	6.30008767890889	6.15074595500551	0.413404203711714	0.125071142537415	0.392541815827878
Merged-chr2-167754888-3	chr2	167754812	167755012	+	996.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63735.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	4.72619332052653	4.53609954232849	4.33048694887526	4.50691629382796	4.0668797630575	3.87651826483914	3.92181846990304	4.04463335946829	-1.38037753859522	0.000943355392267941	0.0128388324027227
Merged-chr11-86894402-4	chr11	86894282	86894482	+	848.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86722.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	4.14375895153369	4.12779819460857	3.83903833745553	3.8558968173074	4.17235615383173	4.35872275676352	4.17009354281411	4.0957318616131	0.546106823317355	0.187416454347877	0.48581943275529
Merged-chr7-80026644-2	chr7	80026544	80026744	+	866.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	416.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	3.19206066703416	3.09414920151378	3.25487608297901	3.5390398277448	3.20981438271831	3.48590609342069	3.30211854290775	3.66608407440688	0.45085403841888	0.427723824009355	0.71887209364609
Merged-chr2-36235092-4	chr2	36234991	36235191	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 2 of 10)	intron (NM_008969, intron 2 of 10)	4665.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	4.54747854686955	4.43422814950763	5.01255432995404	4.94027140555927	4.57913173816581	4.63626101812377	4.64964653394112	4.7443193609243	-0.244942658415823	0.504755344827718	0.771015182188328
Merged-chr13-89889235-4	chr13	89889097	89889297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028012, intron 7 of 7)	intron (NM_028012, intron 7 of 7)	-146685.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	8.52073744589778	8.49273840330388	8.84932418499725	8.89731948999429	8.50003461598308	8.42953971071477	8.502044554017	8.22203608255725	-0.361714419568809	0.0378951707837886	0.194711640887843
Merged-chr9-121352408-4	chr9	121352316	121352516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	-14542.0	NM_001357973	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	5.58650040555101	5.82670487994228	6.19043542645122	5.68032612742121	5.91262986194876	5.70749117776464	5.69408538905866	6.07493587374113	0.0445477989406393	0.871852227005171	0.95183223179801
Merged-chr18-12956188-3	chr18	12956098	12956298	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14357.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	4.86432817723299	4.26199649841301	4.72822772059393	4.53605596591221	4.62793119173347	4.15400088652886	4.55335656189856	5.01391371894526	0.0311533330062672	0.939784083901781	0.978323821689871
Merged-chr4-10998925-3	chr4	10998821	10999021	+	669.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175175, intron 1 of 1)	intron (NM_175175, intron 1 of 1)	8698.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	3.40504437964165	3.39564908750757	3.34369426769665	3.52432029503166	3.86910269595144	3.45713812175767	3.6611699711632	3.72252520347289	0.846066027947691	0.0889208177486787	0.325381910896163
Merged-chr10-117866336-4	chr10	117866229	117866429	+	963.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20355.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	5.40811094814678	5.20821379463237	4.90498963375982	5.14725353871314	5.64213599074339	5.04519343075492	5.35397852061446	5.67821643861659	0.511998391197273	0.106108555951505	0.358934781509505
Merged-chr2-129598151-2	chr2	129598051	129598251	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	2689.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	2.70247376155053	2.60147156844203	2.76287363719947	2.15069615514126	2.44702019035162	2.87474519346141	2.49642970758068	2.43045780314633	-0.0199517980552474	0.979524654549419	0.99269129061727
Merged-chr11-98606913-2	chr11	98606813	98607013	+	656.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8622.0	NM_001195544	192852.0	Mm.342821	NM_001195544	ENSMUSG00000086545	Lrrc3c	Gm12	leucine rich repeat containing 3C	protein-coding	2.5369028522838	2.46537847552997	2.31746160403209	2.45818313226705	2.44187966684666	2.89340821418019	2.6578472725791	2.98701477385917	1.63158245754746	0.0243420270025657	0.145799255824542
Merged-chr5-143511739-3	chr5	143511649	143511849	+	970.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347530, intron 3 of 6)	intron (NM_001347530, intron 3 of 6)	16244.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	4.5573520326929	3.97396523678598	4.23285153521313	4.40014254887722	3.88659674536246	3.85636797693452	3.59594703057184	3.73276865513367	-1.45850629950435	0.00181654090899018	0.0216872803356276
Merged-chr11-94198963-4	chr11	94198864	94199064	+	894.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12490.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	4.09126908337088	4.10221931455117	4.04042074916914	4.12472679609808	4.25425943514986	4.36206409675939	4.49560996109654	4.44002849400363	0.717873892224863	0.0633138286132202	0.267042420129552
Merged-chr2-3723979-4	chr2	3723911	3724111	+	788.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	10553.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	4.34997520049986	3.90160417981712	3.8715415758471	4.2900213466386	4.08005937290472	3.48155294053916	3.68913570269605	4.15249909549448	-0.64265346482095	0.206454113295269	0.510433980032075
Merged-chr7-58731030-3	chr7	58730925	58731125	+	906.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009728, intron 1 of 20)	intron (NM_009728, intron 1 of 20)	72823.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	3.21807039671136	3.33905119705385	3.21842314629589	3.35475997810849	3.58966305154645	3.74116419766618	3.83036117701151	3.46239329869439	1.22069173181131	0.0169651892439598	0.114417775743397
Merged-chr19-14630930-1	chr19	14630830	14631030	+	568.0	f0_c57.idr	Intergenic	RLTR10D|LTR|ERVK	-32747.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	2.75716546290543	2.79268437312208	2.5245488686825	2.24867549598001	3.20760513115602	3.00806470660596	3.268380990514	3.18231925621913	2.83630204861329	0.000221080262327637	0.00395185132903537
Merged-chr11-11777009-4	chr11	11776900	11777100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31962.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	5.44465331624443	6.5626138447337	6.19726610152849	6.22114211662298	6.40849937679879	6.13875884444074	6.39630947211058	6.19282069501326	0.181599172830751	0.534816043164268	0.789425389581299
Merged-chr7-80095886-3	chr7	80095816	80096016	+	720.285706	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173011, intron 8 of 10)	intron (NM_173011, intron 8 of 10)	19434.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	3.29477959616022	2.94568347670554	3.2952202214084	2.96246036492508	3.25551934334341	3.7827628052039	3.39635363663047	3.61230781173402	1.419553444518	0.0116601899724755	0.0880558762319569
Merged-chr19-11818854-3	chr19	11818769	11818969	+	975.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153434, exon 1 of 12)	non-coding (NR_153434, exon 1 of 12)	534.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	4.52821144113101	4.84892156358516	4.48883912885815	4.18484350571666	4.38832528167594	4.29394710868449	4.46809192265638	4.35766839969595	-0.333768773344784	0.404410915747446	0.701488109467223
Merged-chr15-41647067-2	chr15	41646967	41647167	+	846.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	-141928.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	3.42076042947477	3.4097551684819	3.59578151246199	4.38347275085131	3.03503592070686	3.33698022482761	3.58093756347822	3.84070409310591	-0.882878645499535	0.172353761975122	0.465715702284759
Merged-chr10-21804531-3	chr10	21804439	21804639	+	810.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77645.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	3.21824133006404	3.19043618598597	3.53186755158146	3.60676147083811	3.6515475580019	3.75756683202891	3.81199427726365	3.73557718177067	1.02335790605651	0.0511594367310755	0.234706899586286
Merged-chr3-27743504-3	chr3	27743405	27743605	+	766.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33053.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	3.48321771049906	3.48716432050301	3.53550937429963	3.50268931789783	3.47603134429272	3.42684754461835	3.41645189493988	3.04743180636474	-0.501642696803832	0.346500756001481	0.654729443506499
Merged-chr9-66856753-4	chr9	66856687	66856887	+	740.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 3 of 7)	B1_Mur1|SINE|Alu	-22081.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	3.20718415112122	2.99484814585025	3.09310931408003	3.25604204649732	3.21298881373666	2.93388476654231	3.29815304913055	3.03045802590209	-0.063358625226953	0.912995936901058	0.96737778834115
Merged-chr3-27766249-4	chr3	27766146	27766346	+	962.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55794.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	4.87057686324	4.75810209098497	5.04734943224717	5.22080476260433	4.96396613287615	5.1866628746398	5.14671550982027	4.74986274666977	0.0348642174877204	0.917559032070393	0.969637958663496
Merged-chr1-173877357-4	chr1	173877252	173877452	+	810.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170853, intron 2 of 9)	intron (NM_001170853, intron 2 of 9)	2835.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	4.17870729249176	3.83165665342029	4.1316515318935	4.15738964268722	4.40939238411194	4.35211925748718	4.37374543590362	4.35129698249941	0.706102681628557	0.0740922909211364	0.293250398992191
Merged-chr17-80684069-3	chr17	80683974	80684174	+	840.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360278, intron 1 of 33)	intron (NM_001360278, intron 1 of 33)	43951.0	NM_001360278	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	3.34773489926873	3.57924623902245	3.68051189668036	3.47826523457339	3.66868030914281	3.58337832308594	3.45572320843276	3.62861989130794	0.212152967132485	0.664070686824133	0.860824757192769
Merged-chr13-42049617-4	chr13	42049514	42049714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2407.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	6.23572589045754	6.61911294291328	6.1115945951839	5.67937402273583	6.58256130706536	6.69601053411763	6.73021072385811	6.25206366199121	0.568576478026565	0.0426469689323723	0.209856107959718
Merged-chr2-118905930-3	chr2	118905828	118906028	+	804.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045523, intron 1 of 6)	intron (NM_001045523, intron 1 of 6)	4313.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	3.1309455445869	3.35533171564558	3.26331696887348	2.7676650115552	3.570431992347	3.66575176912567	3.42558327812158	3.68726108491151	1.62326296681546	0.00466045888033761	0.0451205393878559
Merged-chr5-21039534-4	chr5	21039420	21039620	+	943.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	CYRA11_Mm|Unknown|Y-chromosome	-4273.0	NM_001356590	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	4.1634194137484	4.26954566219852	4.58283112302539	4.4443222230922	4.31783214342934	4.54472332382744	5.0720273539568	4.89495501224753	0.783990669411724	0.0527096011953058	0.239365618443325
Merged-chr6-142757266-4	chr6	142757155	142757355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009908, intron 1 of 7)	intron (NM_009908, intron 1 of 7)	569.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	6.51313338273287	6.15907800297675	6.28704858431852	6.52487579064168	6.53564625748814	6.53724818499853	6.27382336668919	6.32027278774971	0.0556917652174671	0.808026432055232	0.92593795364266
Merged-chr7-99102703-4	chr7	99102622	99102822	+	927.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 3 of 14)	RMER17C|LTR|ERVK	38422.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	3.54077257282951	3.6621538192048	3.54121004549563	3.22746149770301	5.10558800881874	4.69034118386869	4.59691964661612	4.27380753416066	3.28505581710605	1.5776976077065e-12	1.63295907048893e-10
Merged-chr15-73720949-4	chr15	73720869	73721069	+	906.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2176.0	NM_001166390	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	4.35631539908321	4.5862884975998	4.1112526198836	4.41543148543705	4.70395828448791	4.23724155218606	4.61520127818884	4.48193065867441	0.332834939605724	0.392876276977588	0.692205902019298
Merged-chr3-100161248-2	chr3	100161141	100161341	+	816.041626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355657, intron 1 of 26)	intron (NM_001355657, intron 1 of 26)	1166.0	NM_175552	269470.0	Mm.24591	NM_175552	ENSMUSG00000033285	Wdr3	AW546279|D030020G18Rik	WD repeat domain 3	protein-coding	3.09889799221433	3.35981187806947	3.28523569370043	3.25945974318512	3.36688885267859	3.39752971685862	3.21475477411158	3.44594762241926	0.37111468284701	0.480423329099977	0.755947743876719
Merged-chr10-127746050-4	chr10	127745938	127746138	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198035, exon 2 of 2)	3' UTR (NM_198035, exon 2 of 2)	5760.0	NM_007412	11536.0	Mm.2857	NM_007412	ENSMUSG00000058396	Gpr182	AM-R|Admr|G10-D|Gpcr17|Gpcr22|MB10|NOW	G protein-coupled receptor 182	protein-coding	4.387499667066	4.36051978944896	4.55563413388164	4.64174846579907	4.6989302405397	4.09593543371266	4.71491460449038	4.47180088594595	0.0621129036877012	0.87468171542855	0.952925927223413
Merged-chr10-84412803-4	chr10	84412715	84412915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 1 of 6)	intron (NM_001004363, intron 1 of 6)	27656.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	5.84054141659988	6.56337678491267	6.27043061142589	6.43392175855189	5.99508844545288	5.96844285753798	6.00004733335427	6.026549152352	-0.489781876022534	0.0560778014383092	0.247864446578555
Merged-chr17-57409883-4	chr17	57409762	57409962	+	979.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 7 of 22)	intron (NM_001355722, intron 7 of 22)	51176.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	5.52352297645797	4.80382319853566	4.83662352993874	5.28856809316557	5.0027261723586	5.30607628622877	5.49625487465679	5.025157997103	0.121966880301016	0.728742108541434	0.892191722318422
Merged-chr8-8661992-4	chr8	8661891	8662091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1218.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	5.36455062680711	5.37778997038569	5.48347908365108	5.77298174885137	5.25195254119618	5.54165355744315	5.73117943399395	5.66272367501388	0.0377106648543097	0.898911857382951	0.962371549797902
Merged-chr12-84038344-4	chr12	84038247	84038447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134247)	promoter-TSS (NM_134247)	-32.0	NM_134247	171282.0	Mm.482217	NM_134247	ENSMUSG00000052392	Acot4	B430212I04Rik|PTE-Ib|Pte1b|Pte2b	acyl-CoA thioesterase 4	protein-coding	5.50216178966371	5.61603051060413	5.58641782767417	5.55821560125542	5.61588728722353	5.81314114667269	5.63596221440294	5.7341190997515	0.219147464387076	0.393966179075968	0.693151044602737
Merged-chr17-23676765-4	chr17	23676650	23676850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013749, intron 1 of 3)	CpG	699.0	NM_001161746	27279.0	Mm.28518	NM_013749	ENSMUSG00000023905	Tnfrsf12a	AI255180|C87282|Fn14|HPIP|TWEAK-R|TweakR	tumor necrosis factor receptor superfamily, member 12a	protein-coding	4.66494003169449	4.81014340905277	4.22781318317204	4.34252892328014	4.84299733789278	4.72184757396591	4.35608038295122	4.41823302811178	0.178175016281399	0.654399370064477	0.855627266515171
Merged-chr13-70643846-4	chr13	70643733	70643933	+	861.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6199.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	4.00479079595353	4.09585525352222	4.00536632047366	4.21355478665097	3.98448888599986	4.48515850056806	3.88472929630181	4.14629980470417	0.120649159405036	0.780683401236094	0.914613598929882
Merged-chr2-60817492-4	chr2	60817394	60817594	+	905.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	63944.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	4.90798998593971	4.55267687634669	5.10707288373914	5.3773417529717	4.8627123727149	4.71973599461016	5.11171589182218	4.75399531445888	-0.325796707032642	0.380151677180879	0.682564774596403
Merged-chr17-35865111-4	chr17	35865093	35865293	+	771.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146711)	promoter-TSS (NM_001146711)	-402.0	NM_001146711	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	2.76367346359487	2.72364274247577	2.99158771294577	2.514828696051	2.68373597906367	2.66819715315234	2.87103319210064	2.48744796243061	-0.330418836845271	0.631076267179348	0.843210446625071
Merged-chr10-128459914-2	chr10	128459814	128460014	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114097, intron 1 of 27)	intron (NM_001114097, intron 1 of 27)	678.0	NM_001114097	68094.0	Mm.417338	NM_198160	ENSMUSG00000025369	Smarcc2	5930405J04Rik	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	protein-coding	3.46071888927516	3.18309335159069	3.51164535640503	3.15351295350067	3.25863615979181	3.41040310084398	3.34080427377119	3.23533651549018	-0.0541359173226753	0.920037661816703	0.970406583631903
Merged-chr2-150844926-4	chr2	150844789	150844989	+	960.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 4 of 12)	intron (NR_151505, intron 4 of 12)	-2319.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	5.14222155685669	4.27673860778094	5.0192496008594	5.62873806658485	4.74380906216729	4.5922434672198	4.53345110124907	5.04785508097123	-0.728761251178569	0.0962184964408409	0.339938271611784
Merged-chr18-46516040-7	chr18	46515945	46516145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173423, intron 2 of 2)	L1MB8|LINE|L1	9926.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	4.42359594373472	5.36025953522116	4.98540333788049	4.44349207405815	5.14299408699787	5.41142070485426	5.18409050724225	5.08319448180443	0.669456801626108	0.0831482942372134	0.313342462701748
Merged-chr4-155221964-8	chr4	155221936	155222136	+	822.473206	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011385, exon 1 of 7)	exon (NM_011385, exon 1 of 7)	499.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	4.11888815590164	3.63639843121054	4.07570345054031	3.3264847123602	4.23471943556448	4.00742429262898	3.91733927489079	4.02775661397857	0.645515043854085	0.200749889285497	0.502930308662197
Merged-chr2-118534119-4	chr2	118534000	118534200	+	886.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	10487.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	4.48748900590531	4.5803740758046	4.67195057847181	4.24969135547716	4.10837488695003	4.08276174250133	4.34389332722994	4.48527838427921	-0.555294888810449	0.169322238857976	0.461822724438512
Merged-chr2-167960455-4	chr2	167960355	167960555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	28128.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	5.07340909111571	4.9711910485555	5.0438573752915	5.39319331202673	4.67146368274405	4.44960073974118	4.497029929741	4.3150077792611	-1.34436074107765	0.000206079123360002	0.00373054575830153
Merged-chr1-191835056-4	chr1	191834953	191835153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13580.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	5.65395698665203	5.57552298209055	5.47454442937166	5.91296172728494	5.31212575935258	4.73814725331948	5.36165845846954	5.49807449187729	-0.723437548915061	0.0233437937922634	0.141773711462416
Merged-chr1-135699600-6	chr1	135699522	135699722	+	948.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20441.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	4.78715632083652	5.22572379665772	4.51475579903765	4.61716131450435	4.34428766172229	4.50857278697569	4.61726189452064	4.46773276128821	-0.718853233026372	0.0633216536305518	0.267044198588046
Merged-chr1-156560646-4	chr1	156560518	156560718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	1831.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	5.69348174343771	6.16947630067251	5.82629100744832	6.1168298884356	6.21935329075786	6.25038061414499	6.02400212910624	5.94154209605687	0.212355124068687	0.406255787188483	0.702804245383133
Merged-chr5-28065679-4	chr5	28065544	28065744	+	795.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-5768.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	4.20052745849606	4.02524321197895	4.11394019134319	4.2358441902587	3.72226494479762	3.93048224654913	4.09580312081071	4.06549336686891	-0.530849207274526	0.216484650673189	0.523052975625069
Merged-chr11-86816393-2	chr11	86816293	86816493	+	904.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6_Mm|LTR|ERV1	-8733.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	2.8355294549178	2.74397416323736	2.89476721721244	2.97892650655736	2.64560140164575	2.74386578832674	2.63435429767019	2.94916514060548	-0.593862551484007	0.358459688212789	0.664413367722986
Merged-chr3-101594458-4	chr3	101594341	101594541	+	909.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 2 of 22)	intron (NM_144900, intron 2 of 22)	10266.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	4.05375538835197	3.99163511586244	4.05432688597904	4.57129857873043	4.28852184046005	4.06892968722078	4.64427347500664	4.41478214595895	0.378756100954259	0.398642799343992	0.696793179038619
Merged-chr17-6317482-4	chr17	6317389	6317589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166629)	promoter-TSS (NM_001166629)	-15.0	NM_001166629	100310872.0	Mm.381893	NM_001166629	ENSMUSG00000092074	Dynlt1a	-	dynein light chain Tctex-type 1A	protein-coding	6.77853032195813	6.62738162412262	7.1408201886353	6.29202882708334	7.10515701774346	7.09279325246233	7.094027199386	6.60534318668906	0.36633503519085	0.150625351576326	0.433413991181278
Merged-chr5-65096253-3	chr5	65096156	65096356	+	968.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-11312.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	3.85899396626188	3.61189859875499	3.91857199884841	4.29166040763529	4.65658003613097	4.40149271579507	4.45488613905566	4.61575510531365	1.37694771641863	0.0030917734443062	0.0327289324795168
Merged-chr11-70700261-4	chr11	70700157	70700357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252485)	promoter-TSS (NM_001252485)	-102.0	NM_001252485	103844.0	Mm.101581	NM_213729	ENSMUSG00000057054	Inca1	AI842396	inhibitor of CDK, cyclin A1 interacting protein 1	protein-coding	6.52739106475572	6.75986909084443	6.4964784616056	5.94359884122882	6.47622413541764	6.49907875198447	5.97595243861183	6.42515972023851	-0.13506065789617	0.623390826547902	0.838941930944268
Merged-chr3-65418355-4	chr3	65418263	65418463	+	947.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25810.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	4.74681573537079	4.9466439825048	5.15793751811373	5.50824737198439	4.87231213178334	4.5630289807294	4.84001366292425	4.61772898035002	-0.80509639611321	0.0291567961061407	0.164150248361859
Merged-chr1-97705497-3	chr1	97705387	97705587	+	772.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_173760)	TTS (NM_173760)	-43469.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	3.21570064513109	2.94264824890726	3.16307386650898	3.2837496562478	2.5067054524162	2.89679279413374	2.84993181868038	3.10590634481034	-1.34165619398642	0.0559574041346415	0.247590729713411
Merged-chr13-47215104-4	chr13	47215022	47215222	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	21119.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	5.26229043786535	4.90438637575586	5.10139527441115	5.14187260806897	5.43151166602821	5.40608340683935	5.29600744140768	5.34746160118719	0.484628455093038	0.0955553030148112	0.338453622470034
Merged-chr11-80169822-4	chr11	80169731	80169931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 6 of 10)	B3|SINE|B2	-14041.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	7.13290603954128	7.44659684947512	7.17843830244022	6.69894293329626	7.02491429786146	7.1928984326166	6.95562363926614	6.4420154156883	-0.277484448454886	0.273507289278222	0.585133459876006
Merged-chr2-125122394-4	chr2	125122299	125122499	+	831.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162418, intron 1 of 14)	intron (NM_001162418, intron 1 of 14)	1261.0	NM_001162417	17876.0	Mm.18535	NM_010852	ENSMUSG00000027201	Myef2	9430071B01|mKIAA1341	myelin basic protein expression factor 2, repressor	protein-coding	4.85273605497162	4.80429848762059	4.71385659033429	4.54002814162744	4.50712944727372	4.64601786200843	4.40554754170007	4.59492684114269	-0.399714812021006	0.262209229062569	0.574115106927125
Merged-chr13-3742583-6	chr13	3742507	3742707	+	835.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	61711.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	4.33677683166041	3.80728102638794	4.37884018688458	4.48857937400659	4.33233139219851	4.07102027403519	4.35866663938261	4.33470048952819	-0.0117849837020103	0.978145885308197	0.992225141734272
Merged-chr2-84650766-4	chr2	84650668	84650868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007615)	promoter-TSS (NM_007615)	-28.0	NM_001355066	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	6.52685217394119	6.42617054024078	6.61958457492071	5.88098099405843	6.60258483854288	6.36175919456866	6.67062207267899	6.00154054112789	0.0893990776146999	0.748368805568788	0.900999421474581
Merged-chr4-137857339-3	chr4	137857267	137857467	+	959.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4870.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	4.71606917088753	4.52762601750644	4.21522313724672	4.54660270662338	3.74135405686919	3.95928025051828	4.48806732656199	4.06279641346468	-1.05169011226167	0.0188933508880971	0.123124423272113
Merged-chr3-84069523-3	chr3	84069427	84069627	+	994.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29366.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	4.7693786579851	4.94423947268983	4.66479570532809	4.34140193998129	4.7615278531929	4.30604697174997	4.26527203582738	4.32807640404625	-0.552139876371234	0.180297831319003	0.476618113921685
Merged-chr2-164879913-4	chr2	164879826	164880026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146129, intron 1 of 16)	CpG	558.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	7.88573076385908	7.67475952672753	7.83708722783434	7.41032099164606	7.58807113252205	7.7831174163403	7.43976041276661	7.69336835507569	-0.0969125193820557	0.616179174389594	0.834845587136962
Merged-chr16-57423143-4	chr16	57423016	57423216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	PB1D11|SINE|Alu	69839.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	7.2338580933197	7.25126801450307	7.39111452720946	7.39007249770794	7.17005039895222	7.30863912288793	7.46620658367623	7.45259213772139	0.036354239475787	0.842787338056273	0.940306909972373
Merged-chr1-43264642-4	chr1	43264547	43264747	+	856.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67886.0	NM_001289533	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	4.53884089726979	4.3047413618572	4.57526867712776	4.36038041106275	3.87731426013388	4.13292658328919	4.19216515458416	4.20797269105743	-0.857158565297743	0.0349811043685267	0.185193010624571
Merged-chr3-152905997-4	chr3	152905885	152906085	+	827.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	76222.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	4.1071929809774	3.85751283199172	4.15374180920743	4.3158752940785	4.15848583032435	4.23239444842431	3.77796155715748	4.27956964109977	-0.0067102682891442	0.987828534201624	0.995370064932717
Merged-chr5-73548397-4	chr5	73548303	73548503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190733, intron 8 of 9)	intron (NM_001190733, intron 8 of 9)	57377.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	7.1239041910819	6.72673850298227	6.76885199797542	7.15788520904044	6.66613764531564	6.722260027672	6.9977696838607	7.05190679120987	-0.142191428991306	0.523189171455446	0.782449675195448
Merged-chr18-52571016-4	chr18	52570915	52571115	+	992.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41148.0	NM_001286182	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	4.53634975955817	4.81738758493939	4.624445288005	4.34629198801999	4.76566990570569	5.16131535730907	5.31910524294077	4.48829656025932	0.793891735420989	0.0391892527482644	0.199132768515756
Merged-chr7-31208355-4	chr7	31208269	31208469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	46011.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	5.40669212828399	5.63077785394499	5.87160200227706	5.45385152810827	5.28345794688558	5.46057514759319	5.38069362528486	5.37400902170705	-0.389569002261627	0.171687176469749	0.465087374685055
Merged-chr2-84494296-3	chr2	84494205	84494405	+	737.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	12568.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	3.21342650328344	3.16141899093234	3.66510995773517	3.13583734946025	3.13890513936218	2.98014182669601	3.47198003825091	3.53249035285416	-0.0358947764809641	0.952489573756553	0.983110341498473
Merged-chr3-38433722-4	chr3	38433605	38433805	+	958.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51111.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	4.71479814997675	4.78497801038118	4.94252921898052	5.08427446453885	5.1853912309384	4.97047792017008	5.01777503251867	4.67054923836949	0.15708976504053	0.644777683403585	0.850540242207308
Merged-chr10-40489552-2	chr10	40489452	40489652	+	760.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80810.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	3.74534618755829	3.32095691309451	3.49527057966941	3.48634711986806	3.48023078682562	3.49354455342528	3.63594413601761	3.43686570998881	-0.0105629365126563	0.983190259089719	0.99395664486631
Merged-chr7-128724945-4	chr7	128724830	128725030	+	819.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145955, intron 2 of 15)	intron (NM_145955, intron 2 of 15)	15499.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	4.22946609004021	4.04922950665523	4.10046926415884	3.76903019774502	3.8862991475995	4.02691465818425	3.88832652660188	4.26774806830632	-0.0295184088082707	0.947049404383564	0.981023220226121
Merged-chr17-56010926-4	chr17	56010808	56011008	+	954.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026530, intron 3 of 12)	intron (NM_026530, intron 3 of 12)	1707.0	NM_026530	68047.0	Mm.358710	NM_026530	ENSMUSG00000003199	Mpnd	E130307M08Rik	MPN domain containing	protein-coding	4.34926030870421	4.4912564529562	4.15544321996711	4.1511467191817	4.76435050036158	4.72854377086502	4.18902763954488	4.59286949210753	0.69723442378203	0.0760054222371958	0.297838946738032
Merged-chr2-165956490-4	chr2	165956390	165956590	+	896.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36147.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	4.43646500315088	4.08186587815548	4.64363225104255	4.72660524193738	4.8256894338548	4.52178573400546	4.5834303049065	4.7843582657685	0.395959028530982	0.310775496593611	0.622874504793814
Merged-chr17-35172649-4	chr17	35172550	35172750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001361501, exon 3 of 8)	5' UTR (NM_001361501, exon 3 of 8)	3402.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	6.57923574846637	6.29837188715685	6.08487552128798	6.51548899629369	6.71448597687586	6.74049157772048	6.72215926759632	6.69579666190473	0.469939038569382	0.0326395841891667	0.177009749561958
Merged-chr18-82479891-4	chr18	82479787	82479987	+	771.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 1 of 3)	intron (NM_001025245, intron 1 of 3)	4764.0	NM_010777	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	4.04141773819853	4.03763509480616	3.89392988913354	3.95534943961278	4.22391165866266	3.90453220050923	3.97769405331662	4.0395859455876	0.186913248130058	0.657122660108252	0.857123881679102
Merged-chr13-36531687-4	chr13	36531611	36531811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 5 of 5)	MIRc|SINE|MIR	202766.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	5.54473450505801	5.48623323652361	5.91559225477614	5.97098772068526	5.7127594606353	5.63458728403413	5.81999645063163	5.77626300960494	-0.0397427351508165	0.884793687997862	0.956745509646641
Merged-chr17-22424203-4	chr17	22424094	22424294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331195)	promoter-TSS (NM_001331195)	-8.0	NM_001331197	74149.0	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	6.523681896342	6.21590703630569	6.31402971857307	6.5588467849863	6.44845544003802	6.6171715059395	6.59936601511155	6.50390686598664	0.174522122490831	0.426825247981425	0.718196581280994
Merged-chr5-41708348-4	chr5	41708246	41708446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310589)	promoter-TSS (NM_001310589)	-167.0	NM_001310590	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	7.56094762127657	7.78143880572611	7.98509831645733	7.75618352401481	7.80331571639639	8.15587229879677	7.72230452190802	7.77056112458493	0.12078221466565	0.519135148111662	0.779880557764505
Merged-chr2-157077734-4	chr2	157077641	157077841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	1524.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	7.53132330342714	7.94001178746838	7.40914148849231	7.36923069387594	7.56153937605497	7.48270878040788	7.50445890444878	7.32153530445021	-0.142678746426712	0.481708308217807	0.756755039529514
Merged-chr3-38202053-4	chr3	38201954	38202154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6065.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	5.51097065262303	5.69601145890542	6.4163362774245	6.48519727299286	5.86697208393078	5.75307482853112	5.88261338346295	5.9536767426342	-0.384376358284769	0.222894739620097	0.531060240047493
Merged-chr12-70476340-6	chr12	70476188	70476388	+	799.777771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	intron (NR_037248, intron 2 of 4)	23134.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	3.29373191006018	3.02055459486846	3.2373235252977	3.11178065450512	3.4036714309464	3.22601835043169	3.33501076885638	3.29237857735808	0.581173817200946	0.276721639252326	0.588736536356447
Merged-chr5-20945536-4	chr5	20945441	20945641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	MLT1B|LTR|ERVL-MaLR	-5448.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	6.55126421966491	6.97436112418739	6.77206248552968	6.81968130322341	6.69241408638375	6.91951459921478	6.84737641367025	6.95406975693641	0.0806052684797773	0.697159202186276	0.877632465289818
Merged-chr6-137413188-4	chr6	137413079	137413279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 13 of 26)	MTE2b|LTR|ERVL-MaLR	2458.0	NM_001164403	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	6.67034272047669	6.63112504794166	6.71662198086043	6.65097937778219	6.84766247659748	6.75313968754574	7.06008025236901	6.52095238183154	0.208931373805104	0.323011333987188	0.63451078156203
Merged-chr1-182928624-4	chr1	182928486	182928686	+	973.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26202.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	4.28409822748451	4.36122059115485	5.2411732572882	4.41553629483587	4.42606441613852	4.25319811935975	4.65400963780788	4.88055144157316	-0.127846115081418	0.77430479296865	0.911799562721906
Merged-chr12-104225109-4	chr12	104224993	104225193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009251, intron 3 of 6)	intron (NM_009251, intron 3 of 6)	10460.0	NM_001033335	238393.0	Mm.483584	NM_001033335	ENSMUSG00000066363	Serpina3f	2A1|BC049975	serine (or cysteine) peptidase inhibitor, clade A, member 3F	protein-coding	6.09392025963018	6.34089909425386	6.19241265107794	5.99347578002049	6.21848660211362	5.7867214470298	5.95880297634938	5.6322341659353	-0.348254269579376	0.188489745570106	0.487058433163965
Merged-chr3-27298459-4	chr3	27298362	27298562	+	935.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18615.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	4.7144675708787	4.50887129123057	4.47590601382464	4.55379649221603	5.55093488063551	5.27106732376662	5.88101416376871	5.18604678365625	1.7881399564869	9.92895230441688e-08	4.25486391376333e-06
Merged-chr12-55321892-3	chr12	55321778	55321978	+	993.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025373, intron 3 of 6)	intron (NM_025373, intron 3 of 6)	-18878.0	NM_021529	59032.0	Mm.427307	NM_021529	ENSMUSG00000021022	Ppp2r3c	4930511A21Rik|5730412A08Rik|G4-1|G5pr	protein phosphatase 2, regulatory subunit B'', gamma	protein-coding	4.50967477062276	5.09315998785919	4.88179304999358	4.41913530237016	4.13752096883445	3.92685884935423	3.97032915189832	3.79796246159287	-1.91041273688222	3.14540166526128e-05	0.000756247193314398
Merged-chr1-51476572-4	chr1	51476497	51476697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028696, intron 2 of 5)	intron (NM_028696, intron 2 of 5)	1802.0	NM_001310548	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	5.83191725464819	6.08367614611934	5.23891720239173	5.75343696020429	6.03021334840912	5.52191456123578	5.63521825593029	5.43456636333514	-0.12467523558367	0.692766616170803	0.875120857763885
Merged-chr1-182378577-4	chr1	182378487	182378687	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30580.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	4.99634102764324	5.24421914277459	5.2602941289867	4.94292798836138	5.35139519519606	5.20874245245998	4.97328523434658	5.37003178003124	0.247665539149235	0.424665804147645	0.716342477702877
Merged-chr8-79029447-4	chr8	79029428	79029628	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 1 of 14)	CpG	1091.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	4.4969276576028	4.30602776270094	4.91013909065978	4.67983921220377	4.52022439942116	4.30311551542231	4.05127618743952	4.41071337676802	-0.633682328216246	0.118533535453664	0.380903881376893
Merged-chr15-55114164-4	chr15	55114096	55114296	+	705.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045093)	promoter-TSS (NR_045093)	-614.0	NR_045093	100503794.0	Mm.360519	NR_045093	ENSMUSG00000053749	Gm9920	-	predicted gene 9920	ncRNA	3.35261685593049	3.52404987649169	3.46789350181827	3.31844173688059	3.61505556785235	3.33824725323823	3.5077243128942	3.66801390286508	0.438141278418853	0.381301342217657	0.683560179285592
Merged-chr1-55027528-4	chr1	55027437	55027637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031179)	promoter-TSS (NM_031179)	-59.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	8.4083793800119	8.60102923974452	8.26612313662156	8.33405773885886	8.50038483607053	8.65859612677788	8.5451992609794	8.09176100043447	0.073057640939356	0.686876958353567	0.871975133399566
Merged-chr14-18238481-4	chr14	18238395	18238595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011584, intron 1 of 7)	CpG	611.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	8.94271043880598	8.8901067482976	9.14855568876945	8.91442550850575	9.05259342491983	9.16206831931358	9.20189369019765	8.86625764637473	0.125155624074562	0.417802723822038	0.711477848869167
Merged-chr7-128110487-2	chr7	128110387	128110587	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008401, intron 16 of 29)	Lx8b|LINE|L1	-19081.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	2.76793191848452	2.7286602235845	2.82771122194117	2.84426276925316	2.61780259649735	2.52338550823932	2.56466670386657	2.88284616618586	-0.691706474209158	0.300089758177257	0.612248910735458
Merged-chr4-53337763-3	chr4	53337677	53337877	+	818.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67545.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	3.5744752911916	3.61685703730801	3.77252815818051	4.12055030157165	3.23817909321856	3.3207931542707	3.39180865088687	3.34009970505435	-1.65636338307342	0.00233381530654791	0.0263429495250196
Merged-chr5-109996441-4	chr5	109996353	109996553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145563)	promoter-TSS (NM_145563)	-74.0	NM_145563	69504.0	Mm.441438	NM_145563	ENSMUSG00000066613	Zfp932	2310001H12Rik|Znf431	zinc finger protein 932	protein-coding	5.53061514538286	5.83285950452303	5.73497586545349	5.47361775862534	6.26870627677755	6.06471777551229	6.55080464941606	6.55231500045666	1.14832949579119	7.47675189351468e-06	0.000212704925271176
Merged-chr15-9710522-3	chr15	9710423	9710623	+	915.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305042, intron 9 of 36)	ORR1F|LTR|ERVL-MaLR	38345.0	NM_177123	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	3.64354460976305	3.26022299376998	3.59387784756078	3.85377188497999	3.17089080178418	3.48524739867974	3.62845185588836	3.3691210399194	-0.645711042946232	0.240689596428969	0.551295043899394
Merged-chr12-80112103-2	chr12	80112008	80112208	+	973.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007564, intron 1 of 1)	intron (NM_007564, intron 1 of 1)	905.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	3.09436838795989	3.20548719413787	2.97593509515392	2.68433652956064	2.98471071154245	3.20724446005189	2.76708737276994	2.91082877954791	-0.0978778314875037	0.87844104863729	0.954545606389742
Merged-chr4-137953602-4	chr4	137953568	137953768	+	892.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 15 of 19)	intron (NM_199307, intron 15 of 19)	-39788.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	3.54944290474417	3.32013434172702	3.18302621505562	3.599958985702	3.45058211629929	3.43068744901177	3.73044267154963	3.8328837489865	0.602281329977136	0.258626438026632	0.570489393947544
Merged-chr11-96400068-4	chr11	96399906	96400106	+	889.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34248.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	3.76140202410318	4.37881333431941	4.5973498234669	3.97367324195763	3.49547196705403	3.94308692388406	3.91059542390578	3.81717238083901	-1.13845394156148	0.0237903772282994	0.143518540616419
Merged-chr11-101972935-4	chr11	101972837	101973037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028207, exon 3 of 3)	3' UTR (NM_028207, exon 3 of 3)	-5922.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	5.87728768652811	5.4029165566688	6.05764587282018	5.77612389907822	5.56925731523714	5.56417641478717	5.35952062689901	5.53138276772991	-0.476468826497286	0.0938181536561539	0.33511729608528
Merged-chr14-75899697-3	chr14	75899591	75899791	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026816, intron 7 of 7)	intron (NM_026816, intron 7 of 7)	51768.0	NR_028481	100303751.0	Mm.484707	NR_028481	ENSMUSG00000065147	Snora31	MBI-161	small nucleolar RNA, H/ACA box 31	snoRNA	2.84494557173205	2.95878458118958	3.33602749749325	3.28754243874217	3.20495501255686	3.22366500291579	3.21700054831881	3.17121752644852	0.278687055661981	0.637577400024189	0.846854206108531
Merged-chr5-139252613-4	chr5	139252523	139252723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163316)	promoter-TSS (NM_001163316)	299.0	NM_026269	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	6.85107428473104	6.83758548900111	7.02803941345829	6.74831362894729	6.64012984669947	7.01491491250495	6.83084230121977	6.49160984394018	-0.154914967643835	0.471453526677111	0.749890292186594
Merged-chr11-49846131-4	chr11	49846017	49846217	+	884.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163672)	promoter-TSS (NM_001163672)	-634.0	NM_001163671	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	4.44129284889994	4.04738109166561	4.16687300003352	3.91733907078838	4.45080388637556	4.80292395891369	4.46147983228912	4.63028938225566	1.06160227688819	0.00735966847667709	0.0631373817390612
Merged-chr7-13009943-4	chr7	13009826	13010026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024699)	promoter-TSS (NM_001024699)	-74.0	NM_001360833	232879.0	Mm.279272	NM_001024699	ENSMUSG00000049600	Zbtb45	BB161562|Gm157|Zfp499	zinc finger and BTB domain containing 45	protein-coding	7.09625209007318	7.08060685472063	7.0974847916932	7.2117767908741	7.3547434652584	7.2380466651354	7.16470413581164	7.09249892532603	0.126771746563614	0.491594690127983	0.763110362091264
Merged-chr18-15202413-4	chr18	15202319	15202519	+	962.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50973.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	5.25281804524915	4.3728535970032	5.47292384559794	5.48054381438907	5.06770338243358	5.20155787932362	5.39403710368689	4.98511515985837	-0.0933964607007686	0.811167297481565	0.926883359837906
Merged-chr15-67145597-3	chr15	67145502	67145702	+	908.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 2 of 8)	(TG)n|Simple_repeat|Simple_repeat	31280.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	3.86637243892586	4.72036621627022	4.01455427407071	3.65675317777556	3.98600966736513	3.69864977169102	3.56461537185905	3.63854219210218	-1.0820507699975	0.0479927166809967	0.226031800423853
Merged-chr8-3280583-2	chr8	3280483	3280683	+	718.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010568)	promoter-TSS (NM_010568)	-966.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	3.22124626403727	3.00032785705135	3.33023528740386	2.85903700618612	3.03486790812158	3.21540982239984	3.20886088758752	3.27521369129492	0.310833459198207	0.593121895779486	0.822526612108404
Merged-chr1-37488548-2	chr1	37488448	37488648	+	773.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024017)	promoter-TSS (NR_024017)	57.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	2.59768401996972	2.7568286280888	2.79777829215068	2.52944520277024	2.81740937906992	2.84142449988423	2.90392499867451	2.7963577058841	0.829347127696375	0.187212072337315	0.485484118948476
Merged-chr16-91452186-6	chr16	91452109	91452309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12895.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	5.20135479254966	5.37343895179298	5.06471808464651	5.59676768986701	5.25814813076547	5.34454651371861	5.41212062171233	5.19868174576033	-0.0790805650286753	0.795882171541531	0.920988786781118
Merged-chr9-104039157-4	chr9	104039053	104039253	+	892.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028721, intron 23 of 26)	intron (NM_028721, intron 23 of 26)	23968.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	4.43906613284946	3.97024435099751	4.27150905241016	4.40099233241906	4.24191045045109	4.20280941074947	4.45748357247717	4.39693096961891	0.0928732973229792	0.816793447365582	0.929532516708259
Merged-chr11-89004056-2	chr11	89003972	89004172	+	1000.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	4669.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	4.81766751564267	5.24317651567617	4.94914740599932	4.77067018124601	4.20272350608632	4.45184338494692	4.25065277205136	4.31755962023825	-1.45726778180106	0.000125263038491689	0.00245015054047814
Merged-chr2-173771908-4	chr2	173771803	173772003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 3 of 5)	intron (NM_019806, intron 3 of 5)	34332.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	5.63825139849284	5.27362656235479	6.03587082135187	6.10829848947383	5.29188197870427	5.52835992635685	5.66109252443091	5.52720416427741	-0.527191940469873	0.0933033720477778	0.334100046231451
Merged-chr1-131931017-4	chr1	131930900	131931100	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145804, intron 6 of 6)	intron (NM_001145804, intron 6 of 6)	20542.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	4.3608555540563	4.32833012828129	4.2718127826629	4.25787429335352	4.6996707162068	4.19651068723706	4.38414758053033	4.48237118819829	0.386504527339803	0.313270832673809	0.625166179930743
Merged-chr2-114200340-4	chr2	114200225	114200425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175466, intron 1 of 1)	intron (NM_175466, intron 1 of 1)	1107.0	NM_175466	228491.0	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	6.21015871329844	6.19734550750558	6.42631981765192	6.01675106584926	6.07697309061636	6.42518596927355	6.45725377641231	6.0620916134955	0.0816002265285957	0.739809587739087	0.897555443523684
Merged-chr16-94574801-4	chr16	94574709	94574909	+	867.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	3902.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	4.98271700848018	5.15639409128403	5.01732665472697	4.45817150246991	4.71057497723154	5.37402587686434	4.56563158257375	5.19925558214006	0.154362568995562	0.695253964635157	0.87648964681401
Merged-chr11-120598523-4	chr11	120598427	120598627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011568)	promoter-TSS (NM_011568)	-5.0	NM_001038230	66156.0	Mm.21645	NM_025389	ENSMUSG00000025135	Anapc11	1110011I19Rik|R75218	anaphase promoting complex subunit 11	protein-coding	8.17149819549749	8.54909740790563	8.13578332269221	7.71112078956359	8.21661497703003	8.44999380079358	8.17004932561677	8.13039062468842	0.0966937907740266	0.645678115726338	0.850934142345746
Merged-chr1-165765295-7	chr1	165765118	165765318	+	876.397949	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 2 of 4)	B4|SINE|B4	1460.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	4.25505532925889	4.34708740483796	4.61752246359946	4.27887663948469	4.43888452065806	4.12401097141433	4.28240881341302	4.42655892125801	-0.105167017538753	0.787981960652632	0.91792167286866
Merged-chr13-41552834-4	chr13	41552705	41552905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-53411.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	5.23115225035371	5.45236803322285	5.67270255936458	5.45399482608868	5.81277160020543	5.68946338932251	5.71580850728554	5.71733436840295	0.46952014627755	0.0775783170800245	0.301219017643414
Merged-chr6-108662820-5	chr6	108662727	108662927	+	620.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011498, intron 4 of 4)	intron (NM_011498, intron 4 of 4)	-1893.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	2.56741238405106	2.47270277831954	2.62558672744596	2.49417414861605	2.16038794827158	2.1699001819847	2.22689014113418	2.50586117181647	-1.7000263838981	0.0362620345496778	0.189379251513268
Merged-chr6-49263435-5	chr6	49263350	49263550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362188, intron 1 of 8)	CpG	602.0	NM_001347209	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	5.6397038683201	5.95273520892889	5.98213643855633	5.62333022599846	5.80550645679191	5.81877651686911	5.97256314072406	6.37654472622359	0.334953199152527	0.223259723367743	0.531271859106465
Merged-chr16-92713991-4	chr16	92713900	92714100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-16671.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	6.1648418571702	5.98014717529922	6.0639385571536	6.54333535084604	5.83106099166945	5.90439126045675	6.17272471726028	6.218919555372	-0.290817123631948	0.274573391880977	0.586358723915758
Merged-chr19-5232821-4	chr19	5232715	5232915	+	888.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153129, intron 1 of 23)	intron (NM_153129, intron 1 of 23)	40304.0	NM_153129	107975.0	Mm.234923	NM_153129	ENSMUSG00000024855	Pacs1	AI325977	phosphofurin acidic cluster sorting protein 1	protein-coding	4.00589170720358	4.19697069689698	4.11145615613422	4.32478365415097	4.20335624718406	4.18526674139625	4.4031855692885	4.73386903159201	0.52903487128383	0.202952072461249	0.505544201774952
Merged-chr10-80741251-4	chr10	80741176	80741376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 1 of 30)	intron (NM_007460, intron 1 of 30)	999.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	6.26325290366669	6.38346992626349	6.46732642510957	6.38953356935361	6.66907026271401	6.55563891419354	6.72101923742041	6.5451148883244	0.363280229390255	0.0807275648773439	0.308201423535961
Merged-chr9-85762542-4	chr9	85762451	85762651	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13217.0	NM_175371	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	4.47915316736436	4.25207548580546	4.66017181649161	4.91538192832575	4.90236837974961	5.13264698891085	5.46583804805084	4.7777045139748	0.952963438604331	0.015423650364411	0.106969282265842
Merged-chr1-157412676-4	chr1	157412596	157412796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177644)	promoter-TSS (NM_177644)	-101.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	7.8556548075088	7.90673264937862	7.87188463892084	7.82270511449261	8.13833609622874	7.93293409437006	7.95367885140863	7.9730863858405	0.186971689583285	0.239539086306536	0.550002061893054
Merged-chr19-29469245-2	chr19	29469145	29469345	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	intron (NM_021396, intron 5 of 5)	52742.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	3.88957644597525	4.24453631023858	4.08945972244404	3.4370729526834	4.54593147735258	4.21615543807596	3.7042910320305	3.94053559101642	0.513230107830198	0.323582190310388	0.635057260507972
Merged-chr14-45691066-5	chr14	45690948	45691148	+	734.616638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32905.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	3.54736598679705	3.55899943619108	3.92801518448696	3.52506350997344	3.66527034705954	3.27755419867634	3.68836263376511	3.48940601511514	-0.313383617716241	0.543741725194647	0.794853204995273
Merged-chr5-76304888-4	chr5	76304766	76304966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289826)	promoter-TSS (NM_001289826)	-10.0	NR_152171	665055.0	Mm.425276	NR_152171	ENSMUSG00000098449	Gm7467	EG665055	predicted gene 7467	ncRNA	7.37838142065349	8.21483172123223	7.87185034529041	7.39996999154461	7.55364967464435	7.90047033480206	7.42321773763268	7.05720995525798	-0.322177388868795	0.215762616194253	0.522035666001248
Merged-chr19-36926077-4	chr19	36925956	36926156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080706)	promoter-TSS (NM_001080706)	-23.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	7.03920361863453	7.00354191220531	6.41116743312911	7.05486796645022	7.81973701582283	7.4704928240385	7.60702516918233	7.4351172040257	0.922916933821857	2.84689317643349e-05	0.000694206952399314
Merged-chr15-91180067-4	chr15	91179964	91180164	+	866.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011994, intron 3 of 9)	intron (NM_011994, intron 3 of 9)	11943.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	4.26463740089789	3.96220068622298	4.54106449592237	4.63347310996193	3.70734011404554	3.97899332236	4.28877766391291	4.34759320910128	-0.698491794583135	0.135422795032107	0.409658271465803
Merged-chr2-51108873-3	chr2	51108769	51108969	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40242.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	3.93198795629244	3.73212632261032	3.8822047370498	3.89391087904571	3.89959092387718	3.71655120765583	4.55187729697106	3.71637950520604	0.43133892831743	0.378856013609749	0.681370295695184
Merged-chr13-58274469-4	chr13	58274379	58274579	+	931.8875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019832)	promoter-TSS (NM_019832)	-291.0	NM_019832	56278.0	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	4.49848417300527	4.45309137635959	4.36760873019209	4.56257186485265	4.61507149570805	4.62972474291762	4.51937915529515	4.6154805244757	0.255889079638789	0.468634162154284	0.747806200655806
Merged-chr9-120054999-4	chr9	120054915	120055115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009987, intron 1 of 1)	intron (NM_009987, intron 1 of 1)	13281.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	5.98407779056436	6.10040380691162	6.14773229256937	5.74416190444724	6.10013723589433	6.09386872320545	5.45986840018718	6.04427439650805	-0.0592901853444849	0.830183026455459	0.934844759338337
Merged-chr15-80034480-2	chr15	80034420	80034620	+	823.333374	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19712.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	3.41325569316551	3.05599035478669	3.64297407595963	3.1476616221773	3.70807885596046	3.81643021860756	3.86398008642312	3.87984953649113	1.60076897101246	0.00216004790106277	0.024818409935391
Merged-chr2-166806140-1	chr2	166806040	166806240	+	1000.0	f0_balb.idr	intron (NM_001085495, intron 1 of 38)	intron (NM_001085495, intron 1 of 38)	559.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	4.12021555311782	4.8670650086168	4.60790098819224	4.41721614041186	4.78382941339942	4.93282237040109	4.58647557300651	4.89468936021466	0.584479727933955	0.125735473518266	0.393811271471296
Merged-chr17-26503142-4	chr17	26503034	26503234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5338.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	8.05413292614316	8.04608857369516	7.40523553397704	7.68247487207399	8.2102128069029	7.9965126706362	7.70224129082268	7.84390799457951	0.172598567446991	0.420312593045875	0.713229765679466
Merged-chr13-45964036-9	chr13	45963977	45964177	+	997.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 1 of 6)	CpG	914.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	5.0399874013016	5.4507041657817	5.31068563840316	4.89264804663488	5.51124251586561	5.4854024541793	5.39959522828242	5.60355659122294	0.583754028216535	0.054013749821802	0.242656191527773
Merged-chr3-89730697-4	chr3	89730579	89730779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019655)	promoter-TSS (NM_019655)	-39.0	NM_001146296	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	6.36829687376061	6.09879659318594	6.02038277110795	6.24972176582927	6.00530392973462	6.28263135438875	6.44937846099107	5.87458286593791	-0.0406982406831587	0.871866393215908	0.95183223179801
Merged-chr17-35972294-4	chr17	35972199	35972399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145487)	TTS (NM_145487)	-2549.0	NM_013854	224742.0	Mm.329022	NM_013854	ENSMUSG00000038762	Abcf1	AU041969|Abc50|D17Wsu166e|GCN20	ATP-binding cassette, sub-family F (GCN20), member 1	protein-coding	4.92989297557654	5.57335992744808	4.49696246787583	4.72306292939595	5.39494848768933	5.24492849038879	4.97825793544525	4.96381431931601	0.311869045640419	0.427506676852021	0.718625962394909
Merged-chr11-70865790-4	chr11	70865690	70865890	+	946.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291143, intron 2 of 18)	intron (NM_001291143, intron 2 of 18)	21029.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	4.41817356097841	4.44099636151802	3.66384408320445	3.5638162675886	4.68207785984878	4.51179188200366	3.77778299506274	3.96296342422379	0.481914149160882	0.383797282749612	0.685544183546393
Merged-chr18-14812402-3	chr18	14812300	14812500	+	614.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001100449, intron 6 of 14)	CT-rich|Low_complexity|Low_complexity	29155.0	NM_001100449	72504.0	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	3.60876644252827	3.42462764573545	3.39781805025181	3.48819593473038	3.62681555336952	3.38927224006912	3.49392001806473	3.21154842802979	-0.115717438983736	0.823134825277141	0.932185203682946
Merged-chr17-31296686-4	chr17	31296603	31296803	+	879.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001242427, exon 1 of 20)	5' UTR (NM_001242427, exon 1 of 20)	479.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	3.82956298368129	3.95068877802294	3.49844318547102	3.71098470294914	4.05290160838954	3.61433003505608	3.90671603747078	3.55807094205769	0.15019230280945	0.760147977366049	0.905943555035463
Merged-chr10-94333518-4	chr10	94333415	94333615	+	921.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	21566.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	4.46059728249418	5.02591642732735	4.69455057148738	5.18455024685189	5.17846578292884	4.87273872077077	5.1015199691219	5.18291336557319	0.384095049068358	0.287963979970247	0.599909403741983
Merged-chr13-13955116-2	chr13	13955016	13955216	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362405, intron 1 of 12)	CpG	442.0	NM_178640	97884.0	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	4.31221583543521	4.52661563737222	4.87333185381398	4.29925136103442	4.8276479023167	4.67465536639923	4.47888380384346	4.86997002962914	0.465142331935577	0.219448773181812	0.526993886166704
Merged-chr2-49349898-4	chr2	49349779	49349979	+	929.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-101607.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	5.66581972905926	5.01389765091514	5.85354479416769	6.22983729298938	4.88273074167308	5.17431906569851	5.94630010243122	5.8493094615656	-0.35611173163917	0.544002584668164	0.795027379566929
Merged-chr12-112717303-2	chr12	112717203	112717403	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4871.0	NM_001024602	217882.0	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	2.73419230706145	3.01103911597839	2.65675900682225	2.92436055317012	3.41541129897428	3.23762112731551	3.16745195259627	3.00601310568006	1.50996699614062	0.0186653117476192	0.122258049589011
Merged-chr19-5925685-3	chr19	5925545	5925745	+	893.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026772)	promoter-TSS (NM_026772)	-829.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	3.55394654280785	3.55567102537771	3.55444353969936	3.25300349013618	3.87292259599294	3.61619743108611	3.48624602781835	3.25442783882778	0.353478836440379	0.505844208307691	0.771672879897407
Merged-chr4-138345130-4	chr4	138345058	138345258	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028176, intron 2 of 3)	intron (NM_028176, intron 2 of 3)	-18862.0	NM_026880	68943.0	Mm.18539	NM_026880	ENSMUSG00000028756	Pink1	1190006F07Rik|AU042772|AW557854|BRPK|mFLJ00387	PTEN induced putative kinase 1	protein-coding	5.29700442714902	5.6079117642366	5.40975840122484	5.14637666745534	4.56500734107139	5.06783548372621	4.94205492462172	5.43235889563413	-0.636838403741595	0.0709142809941866	0.28561124918719
Merged-chr3-28107658-3	chr3	28107557	28107757	+	925.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 20 of 25)	intron (NM_008875, intron 20 of 25)	123486.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	3.62145546186055	3.6961563742234	3.98554906526792	4.35829065508195	3.83735632078488	3.73956892522315	3.6667062806399	3.9371047027918	-0.470539677535162	0.350632638565181	0.658186562602986
Merged-chr6-29212352-4	chr6	29212251	29212451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011829)	promoter-TSS (NM_011829)	-54.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	6.69308081931552	6.60492700639504	6.85200297919282	7.01519808306373	6.70285532489675	6.8402525219269	7.03804538257174	6.68949531563893	0.012686965030434	0.953309441484279	0.983371922023818
Merged-chr18-12926626-3	chr18	12926527	12926727	+	900.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 4 of 27)	intron (NM_207530, intron 4 of 27)	15214.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	3.40577119276172	3.65710823901417	3.27953086331282	4.03534012686866	3.31399145909269	3.45794072220362	3.61287429422073	3.62580944101034	-0.438379447402427	0.436014600807934	0.724953319104812
Merged-chr7-123367842-4	chr7	123367714	123367914	+	791.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	2101.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	3.3954990281142	3.17262286207721	3.50745629805685	3.41696822836857	3.41158326060279	3.67684719275548	3.43942910824645	3.60788626464128	0.519382191234603	0.307856803242435	0.620218487956562
Merged-chr9-63706520-4	chr9	63706400	63706600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	51494.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	6.80035486156443	7.36054247113899	6.95356482430919	6.65070211218892	7.35764909303735	7.09100269288088	7.01800821269554	6.86805702416009	0.19098103703056	0.422151280884294	0.71451719270612
Merged-chr16-17368197-1	chr16	17368097	17368297	+	678.0	f0_balb.idr	intron (NM_001001983, intron 7 of 54)	intron (NM_001001983, intron 7 of 54)	36826.0	NM_001331047	15160.0	Mm.6609	NM_008223	ENSMUSG00000022766	Serpind1	AA985900|AI303446|HC-II|HCII|Hcf2	serine (or cysteine) peptidase inhibitor, clade D, member 1	protein-coding	3.00223546695241	2.89897405591092	3.11386913772827	3.26556159884575	2.70272263004575	2.7008633499471	2.87126933373139	2.94167603546769	-1.26828785765572	0.0492880447366328	0.229734381265719
Merged-chr5-150522645-4	chr5	150522565	150522765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009765)	promoter-TSS (NM_009765)	44.0	NM_001081001	12190.0	Mm.236256	NM_009765	ENSMUSG00000041147	Brca2	Fancd1|RAB163	breast cancer 2, early onset	protein-coding	6.74902062605423	7.11243663657496	6.62775244944446	7.11309639247966	6.71975072579047	6.5780728146137	6.91665402396416	6.5227625512156	-0.333039395519164	0.142513713271129	0.420143331819144
Merged-chr14-70519752-2	chr14	70519652	70519852	+	744.125	f1_balb.idr|f1_c57bl6.idr	intron (NR_033241, intron 1 of 19)	intron (NR_033241, intron 1 of 19)	508.0	NM_009755	12153.0	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding	2.86951917569336	3.01635023043136	2.98820198596581	2.70388398184209	2.67022624190386	2.97884584096151	2.66223926734863	2.86842552443619	-0.445582600727829	0.488544674554571	0.761354849369878
Merged-chr12-91581368-2	chr12	91581268	91581468	+	892.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_175335, intron 2 of 8)	intron (NM_175335, intron 2 of 8)	8281.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	2.9482794195161	2.80017538574659	2.68157600279085	3.19564932399057	2.98990978704465	2.99320402558939	2.93827368586477	3.0060755420483	0.198405342253747	0.756894872839948	0.904554066545557
Merged-chr9-107696296-4	chr9	107696229	107696429	+	823.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011349, intron 2 of 17)	intron (NM_011349, intron 2 of 17)	9262.0	NM_001311151	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	3.37157020179053	3.26158541347985	3.30985216408372	3.65884800972968	3.41359270848108	3.54638717873032	3.62922636551913	3.8248924017024	0.59307149890844	0.265414502296287	0.577029287078418
Merged-chr7-139434223-4	chr7	139434094	139434294	+	661.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355162, intron 1 of 15)	intron (NM_001355162, intron 1 of 15)	33700.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	3.54357119759158	3.73302180564283	3.65454966906935	3.5745806844876	3.51631605429399	3.66038780654947	3.78781151683635	3.8020674295698	0.202868662355998	0.666655462190123	0.862087261654175
Merged-chr6-52401636-4	chr6	52401544	52401744	+	891.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86812.0	NR_038163	70593.0	Mm.158412	NR_038163	ENSMUSG00000086126	Evx1os	5730457N03Rik|Evx1as	even skipped homeotic gene 1, opposite strand	ncRNA	4.69373453695184	4.66937780945006	4.49956977487176	5.15068742925822	4.24293948676635	4.34748143266713	4.5596978741813	4.10788013680328	-1.06663276218969	0.00843485769178671	0.069679130793646
Merged-chr11-87470991-4	chr11	87470882	87471082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	CpG	43391.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	6.19761861576638	6.74275338229837	6.44320779292801	6.07975214069461	6.48067649032909	6.70128923065913	6.44377401417016	6.33166961580804	0.16442402848106	0.512046850316516	0.775675608570773
Merged-chr11-93885293-4	chr11	93885212	93885412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134012)	promoter-TSS (NM_134012)	454.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	5.54601965463605	5.47157026358766	5.31636779078684	5.30010039176876	5.45566860837651	5.71924749104213	5.38080234996489	5.66807310215948	0.268137736490329	0.335022148059708	0.645382539647689
Merged-chr17-37046052-4	chr17	37045967	37046167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019439, exon 1 of 23)	5' UTR (NM_019439, exon 1 of 23)	101.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	5.60763294938038	5.50849114641318	5.80346811669094	5.52760338885498	5.57471869301122	5.6456314773993	5.81791987144149	5.49477450313722	0.0484660684825932	0.856247488477579	0.945878451904049
Merged-chr14-47373884-4	chr14	47373781	47373981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145953)	promoter-TSS (NM_001145953)	21.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	6.10173642717329	6.20906191041086	6.12316498987583	6.11840422948682	5.963292191516	6.23623697891276	6.05109750961828	6.01371879060642	-0.116921199320002	0.612294857904285	0.832715671052909
Merged-chr15-3293704-3	chr15	3293610	3293810	+	656.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166063, intron 4 of 8)	C-rich|Low_complexity|Low_complexity	9816.0	NM_001166063	100039139.0	Mm.455610	NM_001166063	ENSMUSG00000091119	Ccdc152	-	coiled-coil domain containing 152	protein-coding	3.89571862721813	3.27267747972756	3.55660805714126	3.61732561155304	3.50643562083903	3.67367071443545	3.59647298466116	3.66115928436144	0.0186796300957901	0.970558199997786	0.989436241028349
Merged-chr3-89912466-4	chr3	89912344	89912544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	752.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	5.98966265385978	5.78117611146929	5.79281387563588	5.52840698775646	5.61355060025176	5.96721566985585	5.63911119462502	5.78869570516223	-0.0240448445905277	0.929250772289947	0.974384088872251
Merged-chr8-125083985-4	chr8	125083946	125084146	+	716.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 1 of 12)	intron (NM_174854, intron 1 of 12)	29851.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	2.90824002894648	2.88349409537154	3.03712632657044	2.90862373368792	3.27268708787268	3.20779953540599	3.08531784359789	3.15243024752083	1.02134803993654	0.0684810852992851	0.279448212493138
Merged-chr1-87813791-4	chr1	87813697	87813897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009118, intron 4 of 15)	intron (NM_009118, intron 4 of 15)	10117.0	NM_009118	20215.0	Mm.1276	NM_009118	ENSMUSG00000056055	Sag	A930001K18Rik|Arr1|Irbp|arrestin	S-antigen, retina and pineal gland (arrestin)	protein-coding	5.54223289086597	6.09581650566427	6.03354812104279	6.32390468315579	5.88350169046152	5.63045157934533	5.68223289672986	5.7584206395986	-0.479106331240836	0.0896687202877504	0.326957114971661
Merged-chr8-120702217-4	chr8	120702116	120702316	+	861.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	33896.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	3.8163618273417	4.03157778938091	4.24876572063352	4.33398459102242	3.90644004638685	4.09999038569225	3.96102487728702	4.07200631141663	-0.339268594172366	0.43752950145751	0.725737614792881
Merged-chr16-17796514-4	chr16	17796411	17796611	+	924.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153790)	promoter-TSS (NM_153790)	-771.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	3.97527216993323	4.18762716287791	4.17015992550601	4.06828966593702	4.02999618541536	4.29564722797319	4.10639664586817	4.25460061309501	0.174445847200954	0.666220333009806	0.861914264044268
Merged-chr2-118513137-4	chr2	118513033	118513233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31454.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	6.75121274738058	7.19746409209353	6.69132250957643	6.50710422941583	7.05909463408297	7.18401163232132	6.83146452432414	6.95325964350648	0.289294503012783	0.211924275712301	0.516740975730402
Merged-chr5-113626623-4	chr5	113626522	113626722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	16981.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	6.07805300766252	6.42114014560767	6.37975045683137	6.04569601275702	6.22582740127387	6.23385218776792	6.00513471614314	5.81702650099382	-0.226810221677394	0.368028977395228	0.672518345194468
Merged-chr12-34847492-4	chr12	34847390	34847590	+	878.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 2 of 27)	intron (NM_001271386, intron 2 of 27)	69605.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	4.40332568008834	4.06269567937081	3.98734811403133	4.33474405680184	4.11314787852929	4.45043374177691	4.42195943140892	4.13916861187148	0.167105109934858	0.686212755054134	0.871787672169905
Merged-chr10-39499291-3	chr10	39499192	39499392	+	904.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	-113642.0	NM_134000	103213.0	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	3.62436332169291	3.75555147160632	3.73006348820052	4.01402792965354	3.59892807771632	3.49866605354381	3.49792056952783	3.82492725884072	-0.584468070995053	0.234061090282621	0.543723238550186
Merged-chr4-132533665-4	chr4	132533558	132533758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007512, exon 2 of 4)	5' UTR (NM_007512, exon 2 of 4)	1756.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	6.52726064412066	6.43952331178934	6.18571113816574	6.53657076233672	6.51985891558295	6.27777667279644	6.46322586097496	6.16043145379918	-0.098356954450902	0.668153344404435	0.862848418644997
Merged-chr2-26237448-4	chr2	26237280	26237480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302956)	promoter-TSS (NM_001302956)	19.0	NM_153559	227638.0	Mm.116769	NM_153559	ENSMUSG00000036327	Qsox2	BC030934|Qscn6l1|Soxn	quiescin Q6 sulfhydryl oxidase 2	protein-coding	6.61810280273351	6.43893100636612	6.22557861388615	6.06746233283512	6.47569070015829	6.58767351290856	6.32640488508137	6.35441183707725	0.1495493472924	0.531199153819246	0.787095803840917
Merged-chr5-99460216-4	chr5	99460110	99460310	+	852.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-207283.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.39738147751699	4.06227430072313	4.19704275030551	4.06741233666209	4.0140852148897	4.13293189496082	4.04174369390469	3.95572350834684	-0.37376633762332	0.368907664051288	0.673294323577092
Merged-chr4-135921587-3	chr4	135921499	135921699	+	858.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024243, intron 1 of 7)	intron (NM_024243, intron 1 of 7)	873.0	NM_024243	71665.0	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	3.92653274503387	3.50832713153219	3.64305626403747	3.57583547821428	3.67688802696077	3.39207595871375	3.62841005693978	3.79079849333982	-0.103633062251373	0.834019768769414	0.936661877297498
Merged-chr3-104220539-4	chr3	104220449	104220649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159354)	promoter-TSS (NM_001159354)	-143.0	NM_001159354	99470.0	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	8.13470868570812	8.29894241447181	8.14251658812192	8.4213462546625	8.53509137500393	8.51165340741288	8.81602435962059	8.52297155169548	0.429240030469645	0.00986589902173918	0.0781348881224792
Merged-chr13-37946979-4	chr13	37946875	37947075	+	814.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033615, exon 9 of 10)	non-coding (NR_033615, exon 9 of 10)	47233.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	3.95549860687662	3.80084049348007	3.95608134723497	3.91839189120511	3.78522717156927	3.74245369599334	4.11937180855708	4.33124525106236	0.288045656614273	0.524850678241551	0.78311175823405
Merged-chr12-70946818-4	chr12	70946701	70946901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019785, intron 4 of 12)	intron (NM_019785, intron 4 of 12)	8944.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	5.98842875477416	6.11862940790023	6.16996428138687	5.88687320968875	5.84300997981928	5.79378302379111	6.00122527058203	5.96341213007586	-0.212457867795978	0.384184759902831	0.685759481012083
Merged-chr2-6359830-4	chr2	6359733	6359933	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181399, intron 1 of 13)	MER3|DNA|hAT-Charlie	7097.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	4.90694572820976	4.83930284973111	5.00778748916783	5.01645266099742	4.75722995245206	4.77226228404	4.57423065838347	4.97193676490721	-0.353633292111986	0.28482733504574	0.596601873969183
Merged-chr2-60928069-4	chr2	60927962	60928162	+	942.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	35142.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	3.94738684933617	4.22948688351658	3.89003833663496	4.66492133377041	4.57418021738909	4.07129888228934	4.39843122694172	4.33485551440433	0.282878184871454	0.546954855574301	0.796638012378211
Merged-chr2-35444663-4	chr2	35444597	35444797	+	831.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	16752.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	3.97663731353323	3.8188520191431	3.97723267258833	3.99458971223197	3.64124644197139	3.94858890750443	4.00554687630444	3.92709230304994	-0.186688425081657	0.673332739386591	0.865717176504662
Merged-chr19-34725551-3	chr19	34725448	34725648	+	972.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172838, intron 1 of 6)	intron (NM_172838, intron 1 of 6)	21563.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	5.02134685883792	4.44430905206645	5.05136372994466	5.01289223236875	4.21547666427474	4.41435812997119	4.80773630803123	4.2274425677867	-1.02246751063786	0.0112723977847595	0.0859239667938957
Merged-chr7-30394615-4	chr7	30394596	30394796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19092.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	7.31909891846803	7.28577115376833	7.04468412985283	7.2093453723941	6.8748580439921	7.10573978866499	6.93320327022419	7.09989950813332	-0.299846152442103	0.115177016222828	0.375505100872834
Merged-chr7-140942525-2	chr7	140942425	140942625	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145387, exon 2 of 14)	exon (NM_145387, exon 2 of 14)	1134.0	NM_145387	212974.0	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	3.23993723860532	3.49785221867049	3.48436036309654	3.24054769481422	3.70554558375401	3.54271205678065	3.57623788858453	3.68756300490184	0.89459690843531	0.0707148911253636	0.285105064427789
Merged-chr5-118633598-2	chr5	118633498	118633698	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	72879.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	3.75560194830888	3.57023101135284	3.90518848871802	4.29562367432739	3.80615447945497	3.50968448071746	3.79207321998826	3.80557083271465	-0.547276072258929	0.282750734909526	0.594930815576138
Merged-chr9-98601708-4	chr9	98601588	98601788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025485)	promoter-TSS (NM_025485)	-9.0	NM_025485	64655.0	Mm.17949	NM_025485	ENSMUSG00000032459	Mrps22	3100002P07Rik|Rpms22	mitochondrial ribosomal protein S22	protein-coding	6.75487961182375	6.67975299109973	6.62348385391459	7.06047541728777	6.64684899923986	6.19853062716272	6.54238748249733	6.52194848573486	-0.444603318949331	0.0535656844506023	0.241590069220998
Merged-chr1-161767376-3	chr1	161767315	161767515	+	747.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21080.0	NM_001205243	14103.0	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	2.97897646335196	3.05995904443852	2.90838961935554	2.77926087111818	3.60873083182693	3.15962442522051	3.16012233617271	3.57731376544898	1.84467514621238	0.001506083951083	0.0187349789503909
Merged-chr7-88192918-4	chr7	88192815	88193015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-85170.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.80466361658051	6.7594184371059	7.69383820762259	7.47507342460386	6.2337662927949	6.09047444312288	6.62261720686628	6.62007108772228	-1.18386964099373	3.20430499652139e-05	0.000767168601908496
Merged-chr15-27783276-4	chr15	27783164	27783364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 34 of 56)	intron (NM_001081302, intron 34 of 56)	-101722.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	7.19384085540339	6.93633553490185	6.55733635992792	7.09448003055784	6.71599374096738	6.45337397864138	6.45445050995914	6.82586667903394	-0.489137040832852	0.0350153153418454	0.185327638268706
Merged-chr17-10392891-4	chr17	10392800	10393000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63316.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	7.14676632462588	6.94279187417533	7.44656900439062	7.55146192897746	7.15297166035899	6.99588964600783	7.45447449295446	7.0834911946678	-0.160233081480546	0.471277758884378	0.749763001969747
Merged-chr19-37428762-3	chr19	37428701	37428901	+	939.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-6040.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	3.49711614303318	3.64799564734459	3.49756386079111	3.64885918829686	3.53402505126917	3.77698573398038	3.4846136508308	3.65739561450583	0.101573522806043	0.833210066611469	0.936237948428556
Merged-chr14-55680830-3	chr14	55680727	55680927	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145705, exon 4 of 9)	exon (NM_145705, exon 4 of 9)	990.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	3.95621066309919	4.08397816335326	3.52350336221937	3.46572834308852	3.72644812366223	4.17088311229267	3.84453320293872	3.70095126675968	0.261544353539142	0.605125189323334	0.828698063423653
Merged-chr11-87434756-2	chr11	87434656	87434856	+	579.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	RMER17C|LTR|ERVK	7165.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	3.50971145218502	2.96787647627265	3.06550385961952	2.79144778978633	3.05777340844212	3.2444666120948	3.49379353733482	3.30486842638853	0.665585553535049	0.27859356338224	0.590822005054816
Merged-chr2-163712852-5	chr2	163712750	163712950	+	879.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	18813.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	4.24743908609272	3.62598768551446	3.86882520813159	4.27558481127094	3.67695451089598	3.58663342502973	3.52216775185534	3.76437464977356	-1.16605239753072	0.0202966975185469	0.129278925671531
Merged-chr3-31145937-6	chr3	31145838	31146038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3982.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	4.46244336711772	4.76973553202208	4.77732315647952	4.71879622295772	4.52192674905957	4.54788389609925	4.56908012548343	4.58722914398272	-0.300095104723745	0.391025990493343	0.690939565734194
Merged-chr17-78937141-4	chr17	78937084	78937284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028611)	promoter-TSS (NM_028611)	49.0	NM_028611	73694.0	Mm.104959	NM_028611	ENSMUSG00000024082	Ndufaf7	2410091C18Rik|AL033374|PRO1853	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7	protein-coding	8.5974075233104	8.61456871861849	8.27253729627961	8.7581680531672	8.25999362272161	8.32791791548071	8.37637630934782	8.21963811863923	-0.357599955935624	0.0332606076624489	0.179203181261166
Merged-chr19-6118520-4	chr19	6118416	6118616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133678)	promoter-TSS (NM_133678)	70.0	NM_133678	66406.0	Mm.303924	NM_133678	ENSMUSG00000024790	Sac3d1	2410004C24Rik|AU015683|shd1	SAC3 domain containing 1	protein-coding	6.21619868145097	6.30457218352565	5.65161162294072	5.948469639938	5.96840232642035	5.98924592357522	5.5946235357149	6.28364248561672	-0.112460422426363	0.692131046849418	0.87477161166799
Merged-chr10-60285122-3	chr10	60285027	60285227	+	915.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	666.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	3.81626669523937	3.62882753802025	3.76319205225871	4.09927395198186	4.22924614232931	3.70501421244998	3.90123415329815	4.00885364870062	0.357540170977342	0.454556733223946	0.738370105894031
Merged-chr3-75298081-3	chr3	75297993	75298193	+	862.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28015.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	3.5387668661244	3.07607527098965	3.2972637515204	3.25234971990304	3.12415510258772	3.03720556641204	2.98858785383427	3.06198600416777	-0.951388361168032	0.102654009955943	0.351917942259349
Merged-chr3-30969353-4	chr3	30969238	30969438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165955)	promoter-TSS (NM_001165955)	77.0	NM_001165954	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	5.9700564209323	5.82615095209937	6.54557698248611	5.87594842821633	5.71394298247578	5.98331890233733	5.84947441228555	6.07269104485141	-0.271422025815551	0.336395144473181	0.646407648662756
Merged-chr1-34850956-6	chr1	34850831	34851031	+	970.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145516, intron 1 of 7)	intron (NM_145516, intron 1 of 7)	942.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	3.95325961682006	3.5999153156307	4.05333812917332	3.73204242892176	3.91042316037782	4.22725261471284	4.17012904157123	4.55634926871001	1.03915305960073	0.0220739611765955	0.136856643118891
Merged-chr1-179834238-4	chr1	179834137	179834337	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30222.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	4.97672296438133	5.20381416903253	4.70768449672863	4.7843023711486	5.48191826477269	5.0065356006572	4.88259685572608	4.86548393902766	0.33216046825928	0.349278508653474	0.656818637583855
Merged-chr19-10740900-3	chr19	10740798	10740998	+	944.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027805)	promoter-TSS (NR_027805)	-49.0	NR_027805	403202.0	Mm.34482	NM_207529	ENSMUSG00000067577	A430093F15Rik	Gm674	RIKEN cDNA A430093F15 gene	ncRNA	4.30493460033304	4.84731279014298	4.30558854535467	3.76424058680823	4.96359673548552	4.57828555525941	4.50950767648572	4.85419971340584	0.840192763989795	0.0602672309269594	0.259247067755487
Merged-chr7-51982048-1	chr7	51981948	51982148	+	924.5	f0_balb.idr	intron (NM_001330607, intron 7 of 7)	intron (NM_001330607, intron 7 of 7)	23666.0	NR_027704	75744.0	Mm.386823	NM_001160345	ENSMUSG00000074093	Svip	1700006C13Rik|6620401M08Rik	small VCP/p97-interacting protein	protein-coding	3.34765486209047	2.96915501652684	3.34821296776491	3.59735835646813	2.46557677542574	2.62607323195432	2.67518060353486	2.68111864110072	-4.776652475064	6.35138738953439e-06	0.000183699879317216
Merged-chr10-125331552-4	chr10	125331453	125331653	+	926.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2590.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	5.4474204653085	4.75717518291484	5.57288447290293	5.70718839396932	4.968214940256	4.72248916268536	5.44638196281654	5.0482438178316	-0.644293872857137	0.0854110624418915	0.318204211894677
Merged-chr4-135314637-4	chr4	135314561	135314761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38553.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	5.81251473496376	5.99680338933893	6.18642270948305	6.29172875164511	6.06992380163675	5.9394013685397	6.13573134660752	6.06265571161453	-0.0694525823703293	0.779008875487895	0.913809930096951
Merged-chr5-122114438-3	chr5	122114348	122114548	+	929.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183307, intron 9 of 12)	intron (NM_183307, intron 9 of 12)	13497.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	4.03524810722077	4.05864716202809	3.73054378537409	3.87338813542713	3.77350080044746	4.01368135071052	3.87608439099407	4.07779322506267	0.0154795598989789	0.971964511857304	0.989805739806156
Merged-chr8-70762032-3	chr8	70761942	70762142	+	883.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023065)	TTS (NM_023065)	-1121.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	3.60459967446482	3.37248642389907	3.4481370741446	3.52959725493617	3.28006610024912	3.56350608029833	3.12657074239201	3.65117029305049	-0.251674123373662	0.638232461798932	0.847061371191777
Merged-chr12-40719133-3	chr12	40719048	40719248	+	652.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 16 of 52)	Lx6|LINE|L1	273095.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	3.09353219750091	3.47473686534692	3.27874111359442	3.42900655676712	3.27350153848683	3.26820471945952	3.32208669244691	3.2184016642565	-0.234972704292615	0.664322761898086	0.860955946242955
Merged-chr11-106106369-4	chr11	106106256	106106456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 2 of 15)	intron (NM_011947, intron 2 of 15)	21454.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	5.22972444438102	5.45252174704706	5.50020005050718	5.45157135175884	5.56375224131841	5.15469637363341	5.59979990673748	5.54912404918799	0.120848909047958	0.671275067140917	0.864616305890251
Merged-chr13-62964801-4	chr13	62964677	62964877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289924)	promoter-TSS (NM_001289924)	-116.0	NM_001289926	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	7.21248009670176	6.82628487142616	6.889500094287	7.02336306213314	7.0443186624817	6.95232040647898	7.11269068334212	7.10970222798521	0.0840628586710715	0.666779413678745	0.862118979153907
Merged-chr11-37079645-4	chr11	37079556	37079756	+	895.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135415.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	4.33186756808366	4.70819265753575	4.37542413448586	4.62029278986778	4.36663212128903	4.36977539331342	3.78974242703692	4.03812519939481	-0.851934263365364	0.0485024562245129	0.227327007253554
Merged-chr2-65238673-3	chr2	65238558	65238758	+	811.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027225)	promoter-TSS (NM_027225)	-32.0	NM_027225	319876.0	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding	3.45619707363411	3.78133890214008	3.95159374842068	3.66002447748457	3.52098365570585	3.50930330834727	3.50255696586329	3.57019970548431	-0.624867922957927	0.206549054895752	0.510555465287703
Merged-chr10-16989773-3	chr10	16989672	16989872	+	799.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038020, intron 2 of 8)	intron (NR_038020, intron 2 of 8)	106010.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	3.94798796245101	3.29001614617601	4.03684652113725	3.99297425383139	3.72095363070133	3.97536012799862	3.78766830562129	3.63819524278608	-0.194379993124308	0.707904496148263	0.882657741545225
Merged-chr14-79535518-4	chr14	79535429	79535629	+	940.5125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	19855.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	4.48612915350055	4.81694392473302	4.53012627269854	4.8431272246888	4.5834518507132	4.47572597413192	4.77632929260575	4.76104604794656	-0.0877332267461854	0.807341983951062	0.925729780371477
Merged-chr13-37680512-4	chr13	37680426	37680626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-145512.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.90153253774377	6.68657005064131	6.37780952286205	5.58231835006083	6.13238820605653	5.61706277792554	5.53248016675599	5.52618133142184	-0.733664013010674	0.0331476938796049	0.178811648552967
Merged-chr1-125526186-3	chr1	125526080	125526280	+	938.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34415.0	NM_001356294	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	3.67529948565207	3.74211018633457	3.6758275381958	3.96973771244513	3.20616699439421	3.5062958520004	3.7575858827924	3.38988384484821	-0.990288407044963	0.0591424599431053	0.256267191592518
Merged-chr3-96269628-4	chr3	96269542	96269742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175666)	promoter-TSS (NM_175666)	-58.0	NM_175666	319189.0	Mm.297655	NM_175666	ENSMUSG00000105827	Hist2h2bb	H2b-616	histone cluster 2, H2bb	protein-coding	7.96316433330236	8.05408663790069	7.37464143518877	7.78543188815124	7.73677864714236	7.66393332576517	7.54253670391489	7.50035971402888	-0.267241444577332	0.184564870527539	0.482096987863476
Merged-chr5-122951749-4	chr5	122951605	122951805	+	923.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 6 of 22)	intron (NM_001003953, intron 6 of 22)	37394.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	4.49493907070722	4.30742954843505	4.53671741977249	4.63346944830098	4.76701406774717	4.49293929408893	4.66647778981342	4.31425661055764	0.164697777516093	0.660051856121847	0.858704732057902
Merged-chr5-114784784-4	chr5	114784699	114784899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026718, intron 1 of 14)	intron (NM_026718, intron 1 of 14)	9659.0	NM_026718	68420.0	Mm.275554	NM_026718	ENSMUSG00000041870	Ankrd13a	1100001D10Rik|ANKRD13|AU046136	ankyrin repeat domain 13a	protein-coding	5.68991791025129	5.87531957030104	5.30973057303601	5.42361452638446	6.00536290770347	5.81485264426942	5.38136669251134	6.05716048874009	0.423279855948671	0.158380651382575	0.445212020688081
Merged-chr14-54578387-4	chr14	54578296	54578496	+	955.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010590)	promoter-TSS (NM_010590)	-735.0	NM_010590	16475.0	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	4.61617672218361	4.92722271144467	4.52805715783497	4.67195502231492	5.03799349770536	4.87490552422567	4.96300802730152	4.91816638668153	0.524110396037174	0.113713637869966	0.372939619102274
Merged-chr8-106611331-4	chr8	106611182	106611382	+	874.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009864, intron 2 of 15)	intron (NM_009864, intron 2 of 15)	7932.0	NM_009864	12550.0	Mm.35605	NM_009864	ENSMUSG00000000303	Cdh1	AA960649|ARC-1|E-cad|Ecad|L-CAM|UVO|Um	cadherin 1	protein-coding	3.87218764420184	3.63061456217047	4.26394885626378	3.99366718062794	3.72610819200932	3.99441412118444	3.85665512261944	3.87049434709783	-0.276213257923219	0.551452061818627	0.79892812604468
Merged-chr9-21165763-2	chr9	21165663	21165863	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183408)	promoter-TSS (NM_183408)	49.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	4.20483016689222	4.03519988257665	4.29233834710165	4.13299698966092	4.27044225070387	4.08131965934879	4.31371237382326	4.20288356796881	0.149086054875271	0.706272616260825	0.881976500514557
Merged-chr3-40846823-4	chr3	40846718	40846918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038067)	promoter-TSS (NR_038067)	36.0	NM_028140	72175.0	Mm.130610	NM_028140	ENSMUSG00000025759	Mfsd8	2810423E13Rik|AI836898|AV142426|Cln7	major facilitator superfamily domain containing 8	protein-coding	9.05949983104001	9.07551089472139	9.05416480674594	8.60641800855258	8.97990956474329	9.10831709407161	9.09544208979604	8.79544430959097	0.0527606664984293	0.76155978457113	0.906556667566817
Merged-chr4-109657445-6	chr4	109657369	109657569	+	985.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	7903.0	NM_007671	12580.0	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin dependent kinase inhibitor 2C	protein-coding	3.82246032872915	4.15056370750583	4.3739006050921	4.21230245214489	4.55329434071182	4.46066546173336	4.18096391172945	4.28685220433259	0.54561785954573	0.186273339551793	0.484125681380109
Merged-chr5-92491014-4	chr5	92490927	92491127	+	990.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	14630.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	5.61902076496878	5.60327350483294	5.90350973849005	5.32011329146202	5.25673722550006	5.42988900407531	5.05360644975018	5.14728104560458	-0.68161055168637	0.0264340578644313	0.154187478876699
Merged-chr10-99085088-4	chr10	99084989	99085189	+	919.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21993.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	4.80604179212796	4.5946014641122	4.52746954125755	4.56918317719165	4.82445885415358	4.90563352436979	4.91837181245679	4.72991593927555	0.468239646373373	0.160971403637652	0.44943454908056
Merged-chr12-59012776-6	chr12	59012719	59012919	+	816.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009147)	promoter-TSS (NM_009147)	-572.0	NM_025656	66603.0	Mm.35353	NM_025656	ENSMUSG00000060121	Gemin2	Sip1|gemin-2	gem nuclear organelle associated protein 2	protein-coding	3.53756656411422	3.4120100952885	3.48155211225536	3.47182516250133	3.70595700704968	3.59688080252228	3.57775104621914	3.78586931169143	0.627752774294113	0.18533713328596	0.483227538833749
Merged-chr1-182045373-4	chr1	182045288	182045488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25408.0	NM_001083120	13800.0	Mm.87759	NM_008680	ENSMUSG00000022995	Enah	Mena|NDPP-1|Ndpp1|WBP8	ENAH actin regulator	protein-coding	5.54573710169179	5.6768027193137	5.78179261076176	5.62081730778254	5.75966646929437	5.44016028191541	6.04641300532438	6.01558043970937	0.299016741786752	0.272490382722983	0.58392103703842
Merged-chr1-85897754-4	chr1	85897587	85897787	+	776.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	3177.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	3.58708698722642	3.68152925385025	3.25189111743159	3.25179425643551	3.39115584350515	3.48802932379486	3.36110265318904	3.37193410594528	-0.165461127141976	0.754952758658636	0.903523774777845
Merged-chr19-29418076-4	chr19	29417977	29418177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 1 of 5)	intron (NM_021396, intron 1 of 5)	7158.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	6.76533721621067	7.17476148795012	6.6645212044072	6.21856867849429	6.84586343210839	6.64536740664668	6.66032869857916	6.31270552657896	-0.155099058780207	0.568217905818131	0.808586868024762
Merged-chr16-18345393-4	chr16	18345286	18345486	+	941.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359110, intron 1 of 9)	intron (NM_001359110, intron 1 of 9)	-1454.0	NM_001359111	27883.0	Mm.265990	NM_138583	ENSMUSG00000013539	Tango2	D16H22S680E|T10	transport and golgi organization 2	protein-coding	4.68327496222524	4.37281323026899	4.60573312414066	4.77481534017353	4.71049686060413	4.77852574753109	4.4586289782296	4.78987182135227	0.135107460846956	0.706635649841485	0.882166741266786
Merged-chr10-123197025-4	chr10	123196958	123197158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027604)	promoter-TSS (NM_027604)	-39.0	NM_001301628	14479.0	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	7.30834139018589	7.16896057027663	7.02964089411769	7.02268055009833	7.20789046632283	7.12903966605287	7.13597818169749	7.14428438742124	0.0362904323397166	0.845377651709189	0.94151454164398
Merged-chr16-57571325-4	chr16	57571215	57571415	+	897.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001177871, exon 2 of 2)	exon (NM_001177871, exon 2 of 2)	22073.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	4.76351611078822	4.37410811291255	4.90400044687079	4.91702695043617	4.91662925463039	4.93626999673922	4.45593926774315	4.51820044590275	-0.06747307272981	0.858726714150428	0.946576014812915
Merged-chr4-34510574-4	chr4	34510473	34510673	+	915.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-40042.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	4.38703391901046	4.69948239242159	4.63201604633376	4.37235337747293	4.51666181871506	4.6051210443333	4.57279573376457	4.13945320564163	-0.11651941778601	0.761354659794891	0.90651650741106
Merged-chr3-9199116-3	chr3	9199002	9199202	+	942.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51465.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	4.11185537802001	4.00768070137365	3.7319526617223	4.427516745931	3.66483169232039	3.46688996988134	3.60328387363962	3.78401770025533	-1.37793103512537	0.0060086211138809	0.0542819700805849
Merged-chr11-51809773-4	chr11	51809680	51809880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46117.0	NM_025535	66397.0	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	6.14560359393547	6.1755393472241	5.76449081648334	5.61183951268609	6.6054673553375	6.15706707013652	5.90563179205851	5.67932073362617	0.323626764851795	0.29595900826145	0.607840340861675
Merged-chr2-92459329-4	chr2	92459211	92459411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_211358, exon 1 of 2)	5' UTR (NM_211358, exon 1 of 2)	483.0	NM_211358	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	5.72863787204052	5.48288603349021	5.68104885418147	5.56697650666299	5.65621962313404	5.69801158837802	5.62745278773359	5.46168047414526	0.00673502705936884	0.979571834378393	0.99269129061727
Merged-chr14-21750569-4	chr14	21750463	21750663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026283)	promoter-TSS (NM_026283)	32.0	NM_001359954	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	6.86975980903001	6.74649611937269	6.39533945524545	6.67127051398608	6.90176081983686	6.90795660741449	6.87492914912883	6.86609256984873	0.290663189418188	0.155373273701243	0.440979076070846
Merged-chr13-5911638-4	chr13	5911556	5911756	+	977.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	50167.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	5.08928522936161	4.94397791201984	4.87991302728814	4.46505089576098	5.54825275899764	5.16419431360035	5.12748589286446	4.87665695545977	0.705487223420352	0.0478850482971544	0.225698948412727
Merged-chr5-72802739-2	chr5	72802639	72802839	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	-49962.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	3.05208117879326	2.8955142882343	3.10941464422633	3.43027253031231	2.86367686696165	2.90215263878059	2.64122692310949	3.10769634964854	-1.09384936045936	0.102130171010923	0.350811863834884
Merged-chr6-86586192-4	chr6	86586153	86586353	+	810.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41921.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	3.85587871180621	3.94206379309583	4.12180188308988	3.50120400045025	3.85577291887037	3.81930030289588	3.68518736608948	3.64105257763776	-0.310532114126272	0.525264627171696	0.783229855070132
Merged-chr17-78366282-4	chr17	78366200	78366400	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 13 of 16)	intron (NM_015800, intron 13 of 16)	51852.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	5.74829115618501	5.52319524427498	6.52431861077668	6.49472247077959	5.18346523638507	5.37022553751411	5.90784013282688	5.95599949921499	-0.812386048189436	0.0237724871096554	0.143447088841825
Merged-chr4-43562489-4	chr4	43562377	43562577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013497)	promoter-TSS (NM_013497)	106.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	8.6097228515616	8.75312527088205	8.82397333025759	8.681163550196	8.51968294616457	9.04832115816919	8.63932850574672	8.74590986454455	0.0383450181928164	0.821875513295968	0.931918902107461
Merged-chr19-7485335-4	chr19	7485204	7485404	+	904.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2013.0	NM_001003934	20168.0	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	3.92674188711808	3.40651206057939	3.46954118572513	3.53360900987328	3.86979084456112	3.38772793546467	3.51584890016005	4.00722268841418	0.387379984504889	0.464032744437436	0.74519745315778
Merged-chr5-32135090-4	chr5	32134998	32135198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1374.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	7.02540456108835	7.23865384306968	6.62166290031506	6.84670762296582	7.06143065090174	7.37600523902643	7.33376436425665	6.86381130504495	0.302241992485124	0.183513241431655	0.480549224187469
Merged-chr17-34898434-5	chr17	34898321	34898521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286573)	promoter-TSS (NM_001286573)	-71.0	NM_001286575	110147.0	Mm.35345	NM_145830	ENSMUSG00000013787	Ehmt2	Bat8|D17Ertd710e|G9a|KMT1C|NG36	euchromatic histone lysine N-methyltransferase 2	protein-coding	4.89124855125163	5.15699165568614	5.00041060768758	4.81680106547034	5.12467068988162	5.17397449597659	4.94148962200809	5.15918146030717	0.270998508027087	0.386373559074596	0.687552275421561
Merged-chr2-75696645-4	chr2	75696542	75696742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	8021.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	6.14403550552049	5.97025786191172	5.94502209818238	5.9904744746722	5.69778916076211	5.65731189614509	5.67804390791206	5.77902153159551	-0.499240972306673	0.0416396211816646	0.206656435370918
Merged-chr17-46704498-2	chr17	46704398	46704598	+	997.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357684, intron 1 of 14)	intron (NM_001357684, intron 1 of 14)	504.0	NM_009358	21770.0	Mm.295009	NM_009358	ENSMUSG00000059409	Ppp2r5d	B'delta|TEG-271|Tex271	protein phosphatase 2, regulatory subunit B', delta	protein-coding	3.49077668874799	3.26040182077056	3.74661549430397	3.10750754562214	3.71538333115234	3.35865509156176	3.58434387556621	3.7896099642178	0.689483601069554	0.205453024213457	0.509030624473167
Merged-chr15-80798539-4	chr15	80798454	80798654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177124)	promoter-TSS (NM_177124)	-56.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	6.81919128664047	6.64413837245878	6.46749326145386	6.3763971855793	6.90196927648017	6.47571797510162	6.74511313164517	6.84198891616251	0.260838819688078	0.245279536059184	0.556340811778258
Merged-chr5-138155804-4	chr5	138155703	138155903	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019747)	promoter-TSS (NM_019747)	-59.0	NM_019747	56314.0	Mm.19274	NM_019747	ENSMUSG00000037007	Zfp113	4732456B05Rik|mKIAA4229	zinc finger protein 113	protein-coding	5.60326402181802	5.10040985169507	5.09762333449348	5.1501542067075	5.14906654290465	5.27371995494066	5.55238235014825	4.90868707582264	-0.0158820695391601	0.961474216376821	0.986233713131014
Merged-chr14-31830000-2	chr14	31829900	31830100	+	703.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024604, intron 1 of 27)	CpG	415.0	NM_001024604	105522.0	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	4.02444188669846	3.47064505003128	3.5438193797622	3.53389057585903	3.60550695310782	3.87911026893891	3.47157463507508	3.75634923679522	0.0872864612176453	0.862868694415356	0.948366801516177
Merged-chr5-122662712-4	chr5	122662603	122662803	+	982.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038845, intron 5 of 12)	Lx8|LINE|L1	12279.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	4.42422088778227	4.69426303629559	4.69260465449051	4.76327207124696	5.18187762830619	4.74311433311701	4.89051076615256	5.03966658974127	0.656484338911802	0.0558959919745495	0.247447458861106
Merged-chr13-62129960-4	chr13	62129888	62130088	+	996.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039239)	promoter-TSS (NM_001039239)	98.0	NM_001039239	630579.0	Mm.440905	NM_001039239	ENSMUSG00000074867	Zfp808	EG630579|Gm7036	zinc finger protein 808	protein-coding	5.12240659135504	5.39640541173309	6.16853962432174	5.59837021223385	5.67298443398656	5.81268477159562	5.6845561061758	6.05564584243011	0.305537957289876	0.345710760678567	0.65401584675986
Merged-chr11-31870762-4	chr11	31870562	31870762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290676)	promoter-TSS (NM_001290676)	-278.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	7.30858746655586	7.48048011012086	7.54065412319394	7.288201279617	7.56988274105758	7.98138404003107	8.04373879810496	7.73800937646846	0.576066897487274	0.00260342922790557	0.0286048864573894
Merged-chr12-35534367-4	chr12	35534253	35534453	+	933.88092	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001314027, intron 1 of 9)	intron (NM_001314027, intron 1 of 9)	636.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	3.6769006986127	3.48698845632548	3.57940347346882	3.41746132742554	3.40031276483681	3.47108361733701	3.40394178157351	3.41485189410322	-0.387016931843623	0.439788756312669	0.727425871224001
Merged-chr13-74000708-3	chr13	74000620	74000820	+	684.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-8699.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	3.21966284165521	3.35380306915398	3.38975061670548	3.29459353524418	3.69365659736762	2.98467764787225	3.20875570705308	3.21847369934266	0.00558040593201128	0.992439835888341	0.997232174860037
Merged-chr9-65551636-2	chr9	65551536	65551736	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153119)	TTS (NM_153119)	28451.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	2.98239953590878	2.7166300166896	3.03554450864039	2.66812628127135	2.9210877114142	2.56250627849905	2.53094741962438	2.74552860481912	-0.704617216216015	0.314882251734274	0.626830096069788
Merged-chr2-38296110-4	chr2	38296017	38296217	+	783.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-8733.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	4.42066125172792	4.65036145372198	4.25124120012502	3.97507894735167	3.96230319139976	4.12684260178996	4.27649284559246	4.45761233393152	-0.307261144680511	0.484076314359743	0.758242770560542
Merged-chr9-22308954-4	chr9	22308849	22309049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1311.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	5.50412616792186	5.43976502760338	5.35927456339172	5.63495013214592	5.36897400714811	5.47280429239082	5.47748308629568	5.81594538466171	0.0670666341719579	0.812688754975189	0.927656717651261
Merged-chr16-57538219-3	chr16	57538122	57538322	+	768.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-11020.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	3.3798466461697	3.68401563613342	3.38027714253435	3.49332582261704	3.50904307031855	3.43376324681411	3.24924861853308	3.31989165243374	-0.364911194032282	0.483367809997793	0.757806109710285
Merged-chr7-102687280-4	chr7	102687166	102687366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001307998)	promoter-TSS (NM_001307998)	61.0	NM_198012	101700.0	Mm.39043	NM_198012	ENSMUSG00000073968	Trim68	AI894158|F730114J12Rik|Rnf137|SS-56	tripartite motif-containing 68	protein-coding	7.13138012613738	7.09807440038806	7.57844209273123	7.52737750188636	6.95653136783399	6.81942126518149	7.01276872826451	7.20655353507984	-0.480117853047765	0.0244644761203707	0.146258772532493
Merged-chr10-70245147-4	chr10	70245084	70245284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025807)	promoter-TSS (NM_025807)	-92.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	5.35730335192394	5.57382477536869	6.1026438417122	5.77023366373254	5.42379903440888	5.33365677979746	5.53478531773613	5.53164157659688	-0.463938828778267	0.115574000524517	0.376203493087054
Merged-chr9-48817503-4	chr9	48817404	48817604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033324, intron 2 of 6)	intron (NM_001033324, intron 2 of 6)	18441.0	NM_001033324	235320.0	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	7.72688288340476	7.51772570330515	7.96040417772804	7.98299697656178	7.4655588610459	7.65001237994785	7.65009728679078	7.53390465304017	-0.317945193585013	0.0895707352281351	0.326714389310366
Merged-chr12-109509153-4	chr12	109509075	109509275	+	887.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31821.0	NR_027652	17263.0	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	4.08611362270566	3.83776463681972	3.89220769128976	3.94930382845535	4.07497650026049	4.06566039908441	4.02334447224764	4.12848303989528	0.350188004809517	0.39802046091227	0.696290186111101
Merged-chr5-145115907-2	chr5	145115807	145116007	+	929.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	BC1_Mm|scRNA|scRNA	1651.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	3.18552845196129	3.66650242017794	3.35999576998748	2.87305359834846	3.24347136473106	3.16778438906208	3.11181806920091	3.41114771941782	-0.229977001977649	0.706007641584842	0.881879743016467
Merged-chr7-44962849-4	chr7	44962731	44962931	+	831.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001252470, exon 13 of 19)	exon (NM_001252470, exon 13 of 19)	12020.0	NM_001357670	78070.0	Mm.231465	NM_153679	ENSMUSG00000007783	Cpt1c	6530437J22Rik|9630004I06Rik|CPT I-C|CPT IC|CPT1-B|CPTI-B	carnitine palmitoyltransferase 1c	protein-coding	4.00036232999243	3.95998216972512	3.54626520044141	3.4282410653408	3.86287616990379	4.22091208726023	4.24092909756449	4.29729161481844	1.13232809196349	0.0178765771542304	0.118642133823867
Merged-chr7-136327285-4	chr7	136327217	136327417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22098.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	5.30269612844701	5.17727300954714	5.69269019822119	5.51953644629434	5.63490466752064	5.51253746546312	5.84054811329717	5.53640302189747	0.338329740629033	0.236488338505801	0.546570557203369
Merged-chr11-67586548-4	chr11	67586470	67586670	+	913.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109657)	promoter-TSS (NM_001109657)	70.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	4.36944041945854	5.13294778270495	5.21528652625838	4.68187891734627	4.60865169605008	4.65061621468067	4.70803620164585	5.03962732163878	-0.261792417774979	0.503848779138907	0.770592637321386
Merged-chr7-4527340-2	chr7	4527240	4527440	+	673.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033548, intron 6 of 11)	intron (NM_001033548, intron 6 of 11)	-4812.0	NM_009406	21954.0	Mm.27674	NM_009406	ENSMUSG00000035458	Tnni3	Tn1|cTnI	troponin I, cardiac 3	protein-coding	2.58932797785541	2.55259163986113	2.71171972783817	2.10328300316384	2.40149300627895	2.41160812938524	2.44728262598158	2.76692949794687	0.0250630484014395	0.974536486670164	0.990926408960312
Merged-chr10-44527740-3	chr10	44527645	44527845	+	824.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68997.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	3.49490439248622	3.78256016530172	3.36849131482208	3.51972793326192	3.86877091152687	3.671604262454	3.70221936186005	3.98945213095007	0.803554820866363	0.0949989678787485	0.337227462736788
Merged-chr9-70258106-2	chr9	70258006	70258206	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	MER90a|LTR|ERV1	50756.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	3.22815011961359	3.24994512766059	2.91631513798654	3.03657099060655	3.36722972820929	3.22261635915748	3.10148409225964	3.11091564138709	0.379903587789737	0.502689219107363	0.769846291295731
Merged-chr12-11178192-3	chr12	11177971	11178171	+	842.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26431.0	NR_131084	77442.0	Mm.159922	NR_131083	ENSMUSG00000112041	9530020I12Rik	-	RIKEN cDNA 9530020I12 gene	ncRNA	3.30639091498095	3.28787832154279	3.25723193453071	3.37886546703145	2.48307866317989	2.72502529064499	2.61098923291526	2.77002007759661	-4.09783728441392	1.64323791541717e-05	0.000429856786407493
Merged-chr10-40525955-4	chr10	40525837	40526037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44425.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	6.20994657474232	6.73109542104741	6.05065994873014	5.98813398300706	6.27656911943167	5.6813164545888	6.23399152635387	5.42710810743783	-0.484864671492447	0.132043041162173	0.404546488629309
Merged-chr5-148489494-4	chr5	148489400	148489600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	62173.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	6.15425574324391	6.14060164881511	5.87513147393134	6.02993987037625	5.95971266900032	5.78776028574155	6.44383997930294	5.84661904330684	-0.02592629765735	0.921990391437979	0.971062621292118
Merged-chr11-109244775-3	chr11	109244656	109244856	+	823.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165934, intron 13 of 16)	intron (NM_001165934, intron 13 of 16)	53425.0	NM_001165934	19739.0	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	3.77753434509968	3.63215226234195	3.5538787398901	3.39886492589303	3.85521971698863	3.79063853641071	3.95111912849708	4.13238118639634	1.05177718668837	0.0231233228115221	0.140843316310229
Merged-chr17-27615571-4	chr17	27615461	27615661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019837, intron 1 of 4)	L2|LINE|L2	7403.0	NM_001291046	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	5.97847424822354	5.90371829261098	5.8303836363814	6.10185948694643	5.27787402240632	5.22752536010441	5.57987504417516	5.57700571335933	-0.916124049382842	0.000713624014819382	0.0102761569392735
Merged-chr9-47647746-3	chr9	47647646	47647846	+	933.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	117394.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	4.09043816907841	3.79958709968956	4.00083556309123	4.18116384305358	3.81272703319007	3.86196452250211	3.78387831207558	4.04426975733636	-0.435683351123674	0.325503575299322	0.637069259899309
Merged-chr13-64408322-4	chr13	64408258	64408458	+	896.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24195.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	3.72166864514039	3.58170247837564	3.77172616477795	3.71676169958666	3.7776321459997	3.61749411039623	3.54782070403381	3.72005881454848	-0.077962582980446	0.867230818528324	0.950313421774078
Merged-chr9-104239287-4	chr9	104239188	104239388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 2 of 56)	intron (NM_001359740, intron 2 of 56)	23642.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	5.45405034094982	5.53708652927935	5.03392546874789	5.61144763303161	5.49910904182956	5.28630430406521	5.40000766159444	5.3656833808415	-0.0842527830909492	0.777177107016589	0.913069887376198
Merged-chr6-115485876-3	chr6	115485749	115485949	+	735.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 7 of 7)	intron (NM_001308354, intron 7 of 7)	-58855.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	3.89049175355126	3.81695145023189	3.57362931015056	3.83821043920206	3.84358105559546	3.96345721271211	3.7780658543337	3.57184776439306	0.0238424926408006	0.958940646619753	0.985325253500605
Merged-chr17-48185436-4	chr17	48185335	48185535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-18178.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	7.41031803594343	7.36015062994423	7.3422895290897	7.21880270867043	7.28911815544426	7.54933701993717	7.51107254631462	7.01397710920853	0.034757875862694	0.859986109248634	0.947085100029529
Merged-chr8-56896145-3	chr8	56896048	56896248	+	759.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	345014.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	3.90079602605473	3.40350056890365	3.6418874497576	3.47706829699151	3.1540389352217	3.55013760178282	3.03352198222442	3.24975472224314	-1.26821835255174	0.0278271037388719	0.159438574984236
Merged-chr12-81845213-4	chr12	81845079	81845279	+	918.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14851.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	4.53995094233374	4.71189298485304	4.72373617049833	4.40456624868964	4.20892769675211	4.40775551501652	4.35301482623426	4.36970783769378	-0.605834702143018	0.10898857314918	0.364500952228652
Merged-chr4-105109790-4	chr4	105109637	105109837	+	912.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178143, exon 1 of 9)	exon (NM_178143, exon 1 of 9)	161.0	NM_178143	108079.0	Mm.48638	NM_178143	ENSMUSG00000028518	Prkaa2	2310008I11Rik|A830082D05|AMPKalpha2	protein kinase, AMP-activated, alpha 2 catalytic subunit	protein-coding	3.78556279716731	3.50003570999863	3.88050281204381	3.53545934550631	3.76622869138839	3.6905733816148	3.77000916249682	3.68209513412038	0.172351938231196	0.714971372634221	0.886010584897636
Merged-chr13-34864608-4	chr13	34864515	34864715	+	870.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10879.0	NM_013830	19134.0	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	3.26413082515679	3.9605450066178	3.60444300130711	4.10221640480108	3.84846983932191	4.09324465501672	3.85949991048293	3.92170719534549	0.416914117933773	0.444723076079713	0.731044175244865
Merged-chr10-6418358-3	chr10	6418246	6418446	+	702.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-340247.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	2.94352724951887	2.76020936564149	3.13288781557241	2.40178088335054	2.10363566031846	2.23652451700424	2.21187503927926	2.21592094384782	-5.80385671038756	1.28716204001092e-06	4.39841127440889e-05
Merged-chr7-4950785-1	chr7	4950685	4950885	+	1000.0	f0_balb.idr	Intergenic	Intergenic	13563.0	NM_001146329	381836.0	Mm.297829	NM_001146329	ENSMUSG00000030433	Sbk2	Gm1079|Sgk069	SH3-binding domain kinase family, member 2	protein-coding	4.70814411869304	4.880642927043	4.77146672735033	4.76299061370379	3.62764524019177	3.59964778914859	3.53789943155234	3.62126556965129	-3.47812254439233	4.86929977056968e-11	3.9074621011204e-09
Merged-chr14-52124122-4	chr14	52124015	52124215	+	740.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168515, intron 6 of 24)	B3|SINE|B2	13212.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	3.7449768989739	3.8715543145837	3.74547782903904	3.87681945625515	4.05508327255015	4.02082015470274	3.88355667598181	3.74345184681403	0.333334860253946	0.449791552416098	0.734839862538956
Merged-chr8-68837855-3	chr8	68837744	68837944	+	911.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42711.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	3.35278413083074	3.09127006694628	3.18976889185587	2.56259846926314	4.59186185403097	4.66041075436309	4.65259335266256	4.48165100613504	6.21378297920368	8.88019027222746e-19	2.5487220297858e-16
Merged-chr1-131555320-4	chr1	131555223	131555423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27420.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	5.74550551708816	5.49787440296936	5.30196943415704	5.56359206991377	5.5649000633105	5.66291225957078	5.8703207548518	5.56689315807883	0.220254926230842	0.420800844834003	0.713566714326837
Merged-chr2-118388478-4	chr2	118388363	118388563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177806)	promoter-TSS (NM_001177806)	-154.0	NM_001355383	27103.0	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding	8.64979328404156	8.88016188881549	8.56389294053977	8.5356600123908	8.67913216694926	8.66817139206304	8.59381336275048	8.51975557278698	-0.056485771482864	0.719846283334996	0.888028373825666
Merged-chr2-51090795-4	chr2	51090716	51090916	+	711.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58295.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	3.44310848603727	3.45828438029945	3.59901213908699	3.39275374227199	3.68744813066369	3.24436126386215	3.37473236135598	3.32672068557214	-0.131813305697104	0.802552109067945	0.923936032101707
Merged-chr10-24164736-4	chr10	24164658	24164858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	15441.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	7.60863010518861	7.63747006493865	7.49225791133273	7.48632326689846	7.6841395384562	7.75189035782716	7.71109478205518	7.51520967369433	0.150444783887268	0.374785476456558	0.677891254741963
Merged-chr3-144138804-3	chr3	144138698	144138898	+	862.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20B|DNA|hAT-Charlie	63534.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	3.96492077544927	4.25779360898528	3.96548154795546	3.57712247259196	5.32302779349257	4.2103135752884	4.62467714067768	4.60894702343394	1.88805400894927	5.09156119060835e-05	0.00114942034248751
Merged-chr8-106007342-3	chr8	106007243	106007443	+	732.127747	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19|LTR|ERVK	-4135.0	NM_025518	66369.0	Mm.287500	NM_025518	ENSMUSG00000031901	Dus2	2310016K04Rik|Dus2l	dihydrouridine synthase 2	protein-coding	4.24322097473983	4.13535515650924	4.17072916545878	3.23766365715596	3.30167906272709	3.40627174004801	3.2752727949728	3.66625929903746	-1.81629930203677	0.00252150159641167	0.0279430113857989
Merged-chr4-122840425-3	chr4	122840331	122840531	+	878.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008917, intron 1 of 8)	L1MB5|LINE|L1	4204.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	3.37427812946282	3.09144148869678	3.65799355705327	3.90217182265901	2.78377297363971	2.97729640694358	2.93178842244761	2.86437587330716	-2.93074606235459	4.57379542129927e-05	0.00104714758537363
Merged-chr10-19559941-4	chr10	19559848	19560048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32001.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	6.28413568992804	6.66942987077349	6.77249695112353	6.40191759098428	6.4986942482555	6.40344372890157	6.23379109006431	5.85133599737328	-0.393056262856422	0.125151163826929	0.392687507570294
Merged-chr8-56301968-4	chr8	56301865	56302065	+	709.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 3 of 6)	intron (NM_008278, intron 3 of 6)	7413.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	3.70481209976905	3.61468546078957	3.70532436053916	3.76538889953169	3.80991038239302	3.92625211273224	3.79055411269281	3.53493312364161	0.210646407325699	0.648654224407473	0.852374306110723
Merged-chr5-135806815-4	chr5	135806709	135806909	+	976.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11297.0	NM_021403	58212.0	Mm.271230	NM_021403	ENSMUSG00000039860	Srrm3	2900083I11Rik|AB041661|SRm300-like|Srrm2l	serine/arginine repetitive matrix 3	protein-coding	5.03143852644627	5.00633517745296	4.72724865425562	4.55750514184703	5.23737846447808	5.23941659683812	5.07329683613862	5.35570668722371	0.779702389662952	0.0164012366205253	0.111843611938338
Merged-chr15-4734291-4	chr15	4734180	4734380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016704, intron 3 of 15)	intron (NM_016704, intron 3 of 15)	7070.0	NM_016704	12274.0	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	7.21736532884666	7.04124560826956	7.76019649648132	7.48307203052822	6.98046072961108	7.01672032117788	7.27685415099751	6.75724329335948	-0.522550854421739	0.0233998188330069	0.141968607629952
Merged-chr4-140679896-4	chr4	140679792	140679992	+	965.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13987.0	NM_001112722	72754.0	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	4.66564454291929	4.63780869058155	4.23928207647229	4.66340148469088	5.14710704969055	4.99147713171382	4.72259521419807	4.98398462789346	0.827835144812197	0.0192912598155795	0.124887001583732
Merged-chr13-108057068-2	chr13	108056999	108057199	+	695.75	f0_balb.idr|f1_balb.idr	intron (NM_001127346, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	12625.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	3.37045950588841	3.09839446770284	3.42091158782166	3.44669474534677	3.07886839065656	2.91093337234385	3.1375335162107	3.14706378175668	-1.06464597637846	0.0671408622031212	0.276403668638286
Merged-chr17-35836385-4	chr17	35836280	35836480	+	959.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011655, intron 2 of 3)	intron (NM_011655, intron 2 of 3)	1921.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	4.96502754102388	4.94930232510529	4.778709341797	4.67445396338204	5.00120367073662	5.13943867647761	4.87084167793811	5.34876279103145	0.5165449440727	0.114237986773474	0.373837784954674
Merged-chr4-147938917-3	chr4	147938822	147939022	+	944.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1973.0	NM_029841	77034.0	Mm.183076	NM_029841	ENSMUSG00000044496	2510039O18Rik	Kiaa2013	RIKEN cDNA 2510039O18 gene	protein-coding	3.76539080902666	3.52806481785736	3.71975038516591	3.64516033331096	3.37598248367832	3.38626987269031	3.50215777494472	3.3985314180196	-0.837532044682275	0.0931455751632944	0.333867879097614
Merged-chr3-90323437-4	chr3	90323351	90323551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18203.0	NM_139304	229542.0	Mm.270999	NM_139304	ENSMUSG00000042390	Gatad2b	AL118180|C430014D17Rik|P66beta|mKIAA1150	GATA zinc finger domain containing 2B	protein-coding	6.97111234383039	6.94147304406625	7.17355824704014	7.16482103051285	7.22615339892787	6.9850923678764	6.96247620968358	6.83242974923824	-0.0732329703317536	0.715294146249628	0.886091335315656
Merged-chr7-142737122-3	chr7	142737016	142737216	+	716.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57390.0	NM_001185084	16334.0	Mm.4946	NM_008387	ENSMUSG00000000215	Ins2	AA986540|Ins-2|InsII|Mody|Mody4	insulin II	protein-coding	3.97296151621198	3.60163993973525	3.34890004163887	3.80689004368085	3.47643873756081	3.86870445628192	3.63183176187895	3.47428181030432	-0.270941795280856	0.600523715147491	0.826836656557895
Merged-chr8-105413605-4	chr8	105413510	105413710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177791)	promoter-TSS (NM_177791)	-12.0	NM_001170788	270091.0	Mm.212709	NM_001033371	ENSMUSG00000054320	Lrrc36	BC036564	leucine rich repeat containing 36	protein-coding	6.93924567638944	6.66009859136066	6.36855033215543	6.68290226047072	6.80909203729759	6.77107038808217	6.39161450994347	6.4733647263722	-0.070408988980082	0.762119798817568	0.906790451164864
Merged-chr1-79760868-3	chr1	79760770	79760970	+	851.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027057, intron 1 of 4)	intron (NM_027057, intron 1 of 4)	899.0	NM_001111279	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	2.87823860430754	3.12801222261574	3.13867016483102	2.94110527265658	3.04650434174385	3.18980793177413	3.06718373121799	3.49422316951933	0.730836969132899	0.207866903224518	0.511999387660666
Merged-chr1-121334476-4	chr1	121334383	121334583	+	949.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-1894.0	NM_178082	72999.0	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	5.27158121561162	4.85099810325729	5.35897492856349	5.78349120516615	4.9806392415077	4.76562206863488	5.38607793073407	5.14360408090108	-0.52693408924851	0.149301399878214	0.431488259447455
Merged-chr2-91987749-4	chr2	91987637	91987837	+	926.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011957, intron 8 of 11)	intron (NM_011957, intron 8 of 11)	-24174.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	4.88899047122222	4.57587277634692	4.34602207828875	4.24849421021998	4.76443460613196	4.42672326368869	4.5055141803674	4.88643632495566	0.301368601432634	0.442888421628409	0.729612214758917
Merged-chr15-36164902-4	chr15	36164815	36165015	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081253)	promoter-TSS (NM_001081253)	-31.0	NM_001081253	78803.0	Mm.26393	NM_175281	ENSMUSG00000048230	Fbxo43	4930533G20Rik|Emi2	F-box protein 43	protein-coding	4.76075204956623	4.64641869172929	4.60986096894641	4.79858622118225	4.92577614901619	4.42079547809038	4.5886740283296	4.48019193983521	-0.16175124211154	0.657899961182151	0.857579088863969
Merged-chr17-69226167-4	chr17	69226070	69226270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	RLTR16|LTR|ERVK	51036.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	7.46628498257611	7.84507355945368	7.64557457544956	7.83234410109881	8.26506845806689	7.85762903179147	7.94898973520734	7.74899061655658	0.342943868523481	0.0783677145744109	0.303008557151772
Merged-chr6-148645066-4	chr6	148644970	148645170	+	968.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-30761.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	5.20771604484259	4.8550082169238	5.17855334595689	5.1703563122116	5.13880641578033	5.12025417487652	5.05903901870638	4.787123733692	-0.14097100483773	0.656858084145626	0.856913004429998
Merged-chr16-24859952-4	chr16	24859831	24860031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 9 of 12)	intron (NM_178665, intron 9 of 12)	138076.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	6.39224701343683	6.35647895453525	6.08023671871315	6.3000360968639	6.42891716940126	6.42254262791442	6.46006096112276	6.22239473931186	0.147151492242039	0.50726558062649	0.772710503440438
Merged-chr2-93167233-4	chr2	93167131	93167331	+	981.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20317.0	NM_001356536	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	4.70982531178152	4.88321509047011	5.15013253041196	5.38364224500203	5.30103663811666	5.11010517910224	5.62049462880919	6.00091736287324	0.851732676580036	0.0200566879269135	0.128278820194966
Merged-chr10-122047347-3	chr10	122047149	122047349	+	937.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242411)	promoter-TSS (NM_001242411)	66.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	3.62664141634984	3.94571269229488	3.99266300465404	3.81748593055104	3.70440494035717	4.06880957685716	3.72774937651142	4.03477775272423	0.103080025422434	0.822236203896838	0.932105157864801
Merged-chr5-135400487-4	chr5	135400367	135400567	+	929.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5921.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	4.38566787190251	4.49333622826731	4.47290519957177	4.36730508179464	4.51520036429054	4.60332138423441	4.36693286306492	4.69891784740698	0.280229386527024	0.437493344667666	0.725725477538789
Merged-chr3-79789095-4	chr3	79789003	79789203	+	878.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51152.0	NM_212452	381489.0	Mm.331086	NM_212452	ENSMUSG00000034009	Rxfp1	Gm1018|Lgr7	relaxin/insulin-like family peptide receptor 1	protein-coding	4.13608177406132	3.88245521118987	4.76314823667573	4.59353255183674	4.24930441451885	4.21121733980776	4.42866040621747	4.23145362146463	-0.268985321143203	0.546544745392249	0.796426402355639
Merged-chr7-100965293-4	chr7	100965191	100965391	+	917.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183168)	promoter-TSS (NM_183168)	-925.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	4.61110863631945	4.918336796229	4.4389637230493	4.72119751942897	4.4063242094994	4.74481962050814	4.59054832223807	4.83070042818738	-0.0989880014204377	0.786725713884521	0.917133702194411
Merged-chr9-108460584-4	chr9	108460508	108460708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133744)	promoter-TSS (NM_133744)	90.0	NM_133744	72454.0	Mm.46488	NM_133744	ENSMUSG00000049305	Ccdc71	2600016J21Rik	coiled-coil domain containing 71	protein-coding	4.78344485763448	5.35961514680475	5.21494191109312	4.92084205063931	5.49460826837382	5.08356266846158	5.02812021455334	5.2113289789079	0.270186145762006	0.416783352152152	0.710673328516556
Merged-chr3-152105597-4	chr3	152105507	152105707	+	924.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016867, intron 4 of 5)	intron (NM_016867, intron 4 of 5)	60293.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	4.98201919817707	5.13384359347196	5.57573411125696	5.60824484806208	4.55109011143242	4.28210331014852	4.73528485941178	4.58019244264332	-1.63830255603072	9.52504194622719e-06	0.000263270745348477
Merged-chr11-70897919-4	chr11	70897814	70898014	+	853.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019400, intron 5 of 17)	intron (NM_019400, intron 5 of 17)	53153.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	4.3452437298318	4.49775282398565	4.03383979346294	4.29692164089696	3.89978726689831	4.05158368669825	4.01707593550213	4.03149614961016	-0.806509123644299	0.0537835931010401	0.242052726612157
Merged-chr11-115250260-3	chr11	115250099	115250299	+	841.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010350, exon 15 of 15)	exon (NM_010350, exon 15 of 15)	17044.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	2.89612418073481	2.89232997711122	3.00835281315362	2.98926564535858	2.56085755500906	2.81357244404375	2.63145268130823	2.63760876134425	-1.45906035293765	0.0285850216575407	0.162304822635776
Merged-chr12-83928047-4	chr12	83927960	83928160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6126.0	NR_073564	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	5.98869635200249	6.42917124415082	6.22164175318754	5.88834488158094	6.38226713093983	6.29764666051853	6.36798912664138	6.09608555851766	0.236635281208445	0.341691949987831	0.650667254559615
Merged-chr1-155095442-2	chr1	155095342	155095542	+	748.400024	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010500)	TTS (NM_010500)	4194.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	2.57105675094257	2.82778269130258	2.70724057002516	2.5731059174467	2.69061808820845	2.81343964160233	2.81945685452916	2.76887830665253	0.492612411814175	0.438091313145723	0.726247795104441
Merged-chr18-67700542-4	chr18	67700443	67700643	+	928.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008977, intron 2 of 9)	intron (NM_008977, intron 2 of 9)	24078.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	4.60439812357689	4.66747981394622	4.77123158280328	5.01468565089728	5.15040361946302	4.6935306049759	5.05592603162004	5.04668431221745	0.422168610821905	0.223209291032511	0.531222887735826
Merged-chr9-98298963-4	chr9	98298875	98299075	+	896.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357445, intron 1 of 3)	intron (NM_001357445, intron 1 of 3)	2405.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	4.43225163123213	5.08930563252673	4.3873624248189	4.68897494979414	4.55691168942237	4.42023649521671	4.53970001528116	4.43017829596947	-0.431486219742886	0.268324456649088	0.580107684368438
Merged-chr6-112728886-4	chr6	112728776	112728976	+	975.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 20 of 21)	intron (NM_080448, intron 20 of 21)	-32206.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	5.70542528693038	5.53679566421153	5.19077748410034	5.24784828304315	5.30642992170899	5.11315299997984	5.40679626750808	5.31454392176192	-0.242343432828782	0.422905306812513	0.714938134013999
Merged-chr12-12316912-4	chr12	12316838	12317038	+	971.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 2 of 11)	MLTR14|LTR|ERV1	54799.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	5.12419129449952	5.08906477414448	5.2194487634301	5.61068385644833	5.06605400725314	4.88673165146082	4.69228153671951	5.48450574792859	-0.4302348523238	0.230593249502118	0.54010980638755
Merged-chr5-62711187-4	chr5	62711086	62711286	+	952.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 7 of 32)	intron (NM_178407, intron 7 of 32)	54991.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	4.85867217324498	4.38182050426583	5.18401759106171	5.11717072323588	4.73754262769764	4.60909367480312	5.1579356851275	5.15147146469343	0.0162878960210103	0.966455561887271	0.988139972127125
Merged-chr16-10356273-3	chr16	10356163	10356363	+	842.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-24978.0	NR_126064	381033.0	Mm.263108	NR_126064	ENSMUSG00000116270	Gm1600	Gm1776	predicted gene 1600	ncRNA	3.10594944008093	3.10688468992625	3.10632928030215	3.20208523243848	3.00443992049276	3.39039580046727	3.03380694969394	3.22111987895254	0.118649638961872	0.833458665062433	0.936308313522916
Merged-chr13-106813395-4	chr13	106813408	106813608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360897, intron 29 of 30)	intron (NM_001360897, intron 29 of 30)	123450.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	5.68897779575677	5.50892131531922	5.7821335102117	5.78286302280996	5.26688941607679	5.50977098544636	5.39772765578181	5.23069399519318	-0.606781211795677	0.0276931068971617	0.158824241063014
Merged-chr1-186445044-3	chr1	186444940	186445140	+	997.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113641.0	NR_131124	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	4.02326236552098	4.14913835082309	4.32746595863867	4.33126530831591	3.13988849899037	3.3445517976173	3.13660503250479	3.14399407904403	-4.08494227258643	1.0192271846656e-08	5.39387150760691e-07
Merged-chr9-121605613-4	chr9	121605518	121605718	+	930.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040740, intron 3 of 3)	intron (NR_040740, intron 3 of 3)	18598.0	NR_040740	75384.0	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	4.1623535893897	4.37094135392963	3.95222805047982	4.00247917369219	4.64756833806972	4.07666071843138	4.44434191089372	4.53706251035461	0.780155836156642	0.0583513249852451	0.253876006331749
Merged-chr8-109608515-4	chr8	109608401	109608601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_020046, exon 1 of 9)	5' UTR (NM_020046, exon 1 of 9)	172.0	NM_020046	56749.0	Mm.23894	NM_020046	ENSMUSG00000031730	Dhodh	2810417D19Rik|AI834883	dihydroorotate dehydrogenase	protein-coding	8.27666640532319	8.2897939792271	8.26121988276777	8.32521162720098	8.05967268901999	8.04412213638261	8.04753530542318	8.04105996536039	-0.309689139496708	0.0368152491559445	0.191119892066653
Merged-chr10-80696121-4	chr10	80696015	80696215	+	963.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	5705.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	4.9081238668	4.95849234372769	4.16679191922384	4.61943297073399	4.87334172087876	4.94144281546126	4.94901946936253	4.42861077060731	0.244009206170695	0.538194608326898	0.791409028532182
Merged-chr7-99858986-4	chr7	99858864	99859064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025668)	promoter-TSS (NM_025668)	-81.0	NM_025668	66624.0	Mm.30043	NM_025668	ENSMUSG00000035227	Spcs2	5730406I15Rik|AA408713|mKIAA0102	signal peptidase complex subunit 2 homolog (S. cerevisiae)	protein-coding	7.61085876305544	7.67487867545288	7.1047344737017	7.15918503860467	7.42063747855858	7.9082782798152	7.12980636759606	7.33813952292734	0.0938763654635628	0.696659454583027	0.87731920902324
Merged-chr11-101725180-4	chr11	101725083	101725283	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7773.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	5.76214365699952	5.58010737441245	6.08311057300025	6.02247808506379	5.65876952502861	5.64140823359116	5.91347236878677	5.33029288892797	-0.377458635638257	0.184738645430234	0.482373882724821
Merged-chr11-4080423-4	chr11	4080316	4080516	+	867.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	15015.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	4.46295304167951	4.45218125694543	4.46365925778091	4.01373946413509	4.6564491507311	4.55135057476206	4.63623548520864	4.54230610020134	0.59323414277027	0.119831763117278	0.383193542698445
Merged-chr14-46822249-4	chr14	46822159	46822359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022023)	promoter-TSS (NM_022023)	-17.0	NM_022023	63985.0	Mm.87312	NM_022023	ENSMUSG00000062014	Gmfb	3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e	glia maturation factor, beta	protein-coding	7.73067949668132	7.69573186676716	7.43666872246168	7.66023714296432	7.87135612147447	7.71118466883043	7.8787021300023	7.62723998256206	0.186154412462488	0.284672019217408	0.596434511402463
Merged-chr15-98762275-4	chr15	98762189	98762389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007478, intron 1 of 4)	intron (NM_007478, intron 1 of 4)	703.0	NM_001355510	11842.0	Mm.221298	NM_007478	ENSMUSG00000051853	Arf3	5430400P17Rik|AI854770	ADP-ribosylation factor 3	protein-coding	6.01753094126162	5.99117698985252	5.83252181788128	5.85394085965495	6.33590877208371	5.98469027338875	6.25761062281777	6.09790911084533	0.412442856561707	0.0836068439155031	0.31437144971271
Merged-chr1-131360954-4	chr1	131360851	131361051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 5 of 22)	intron (NM_001081011, intron 5 of 22)	-81388.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	6.41832951577184	6.70671932112989	6.38633837539217	6.62192488461706	6.0033375328868	5.71706433385546	5.5993018925356	5.87175883729685	-1.11894585435935	5.99154280418143e-06	0.000174212428618803
Merged-chr11-34030690-4	chr11	34030584	34030784	+	890.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-16244.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	4.19830391319779	4.53509739513601	4.19893262118465	4.6862423494472	4.36783819693224	3.88211424085446	4.2260133024578	3.94011440399261	-0.74494548726858	0.0926115342461593	0.332861866093081
Merged-chr14-48422183-3	chr14	48422100	48422300	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23923.0	NM_001310584	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	4.41056875986597	4.21993108389396	4.25018138283973	3.39099944361165	5.45370720338548	5.22453800185817	5.44336872118451	5.39925635803784	2.76623991521287	3.81905013453236e-11	3.11738726520504e-09
Merged-chr8-125783606-3	chr8	125783505	125783705	+	722.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 25 of 33)	intron (NM_175561, intron 25 of 33)	49402.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	3.51264336061716	3.5681436002044	3.80858503959854	3.45654578139968	3.43662422516591	3.44897704072611	3.44360049073278	3.61735345528172	-0.323768342582169	0.51684981527808	0.778534155874179
Merged-chr9-110880211-4	chr9	110880135	110880335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146228)	promoter-TSS (NM_146228)	61.0	NM_001146059	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	5.21932243730924	5.94399470245493	5.57676444068938	5.42574820403427	5.47193832196138	5.46394994528604	5.44124718090524	5.37728686535436	-0.221128681641445	0.460262368792924	0.742492920887327
Merged-chr2-4458484-4	chr2	4458389	4458589	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	57513.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	4.10650559087765	4.14258477669062	3.92066661631731	4.13025631555706	5.26475543173881	4.73030023443049	5.31316998042076	4.81397711634979	2.11760898238222	6.8314397931392e-08	3.03529995652843e-06
Merged-chr5-118408189-4	chr5	118408064	118408264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-152555.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	5.81048068047447	6.7843207671371	5.97431086040125	5.76373964687889	5.91558835501978	5.68609981028836	5.7056416258826	5.80735721350669	-0.58539577416308	0.068487663475311	0.279459034539622
Merged-chr7-141216421-4	chr7	141216354	141216554	+	880.1416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025886, intron 1 of 5)	intron (NM_025886, intron 1 of 5)	594.0	NM_025886	66985.0	Mm.21202	NM_025886	ENSMUSG00000038618	Rassf7	2400009B11Rik|AW210608	Ras association (RalGDS/AF-6) domain family (N-terminal) member 7	protein-coding	4.06271369770304	3.97577283031936	3.81194925010022	3.74431091529049	3.7043915786673	4.14111312518124	4.21402469054804	4.10562443741916	0.412990045241844	0.358150069321094	0.664202698840732
Merged-chr17-24667655-3	chr17	24667499	24667699	+	914.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2088.0	NM_001348231	213753.0	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	3.72687975750965	3.39822850746487	3.52360396826062	3.71528078519663	3.56285836854765	3.74687258179145	3.45427666246171	3.28022174105232	-0.261824877864851	0.610333949259972	0.831595076242652
Merged-chr14-103102729-6	chr14	103102671	103102871	+	851.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3205.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	3.29341540017277	3.1246573488757	3.29387615574985	3.40061446019148	3.12312302809102	2.88778368835737	3.17178830394448	3.06144535928897	-0.86066415407427	0.137173045949126	0.411837364501977
Merged-chr9-96326618-4	chr9	96326491	96326691	+	919.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37124.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	3.77821815139773	3.93387114852247	4.10030558700493	4.15709060224727	3.83823802009959	3.9615051254889	4.29808102494059	4.72176799929722	0.611518119319997	0.200245631453274	0.502259964838292
Merged-chr18-36734467-3	chr18	36734366	36734566	+	727.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028036)	promoter-TSS (NM_028036)	-604.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	3.42758764220846	3.77730408885394	3.81050771322063	3.42130813419962	3.71879472806837	3.7234651839243	3.69681388781174	3.76007525519708	0.346598083551785	0.472295143211168	0.750462332502573
Merged-chr8-70626314-4	chr8	70626202	70626402	+	917.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVK26-int|LTR|ERVK	5793.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	4.63593013950966	4.66884184407805	4.21419524034433	4.80119861899729	4.50784627934685	4.18063166223368	4.38048508414967	4.10800074509446	-0.680636886516995	0.0946381003927456	0.336593481629703
Merged-chr11-79296315-2	chr11	79296216	79296416	+	925.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41621.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	3.43697856855987	3.39955648516078	3.54081351692734	3.00101622132673	3.37626321154102	3.2484138441569	3.36918748156408	3.48812665701755	0.0880991648406731	0.8737828288232	0.952718075588848
Merged-chr2-113494887-2	chr2	113494787	113494987	+	796.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 3 of 16)	intron (NM_001285459, intron 3 of 16)	53823.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	3.15119625726647	3.21043185111897	3.08689593046278	3.42334532763802	3.35409862865363	3.26138460118332	3.41960393193077	3.38030691801719	0.417936277437368	0.444337842407002	0.730774412852539
Merged-chr13-37486462-3	chr13	37486349	37486549	+	864.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	141104.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	4.1253177436233	3.85724887021879	4.38466476208129	4.73036557527795	2.92229387092716	3.26769289479122	3.13537344413524	3.29999457409468	-5.13840916140454	2.48977814621e-08	1.21884400735269e-06
Merged-chr2-102899861-2	chr2	102899769	102899969	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	1796.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	5.09336133809307	4.97964737240409	5.18922684065155	4.73222508778629	5.20651592243313	5.01828465384896	5.13288774451763	5.32940621605887	0.363378866803901	0.253544008019158	0.5648869709151
Merged-chr4-150087295-4	chr4	150087206	150087406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177366)	promoter-TSS (NM_177366)	-197.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	8.08854970545057	8.19483497108811	8.36366996260378	8.34402083455479	8.14219942371214	8.34928341523294	8.08986716590313	8.14174151906931	-0.0941710092468632	0.562955965091903	0.805958458491423
Merged-chr19-26853910-4	chr19	26853811	26854011	+	838.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30004.0	NR_045306	70942.0	Mm.411548	NR_045306	ENSMUSG00000093772	4931403E22Rik	-	RIKEN cDNA 4931403E22 gene	ncRNA	4.87148760342973	4.73932875257587	4.65405906160011	5.16037089347326	3.93304157728007	4.9041118575341	4.50851134469157	4.526323044176	-0.807456613855908	0.0566317553484755	0.249267976637354
Merged-chr11-77404186-3	chr11	77404073	77404273	+	719.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 4 of 14)	intron (NM_177710, intron 4 of 14)	55893.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	3.67996959420568	3.44430380951469	4.0747762875401	3.60569489342158	3.5212540245013	3.69121258195691	3.38258919726569	3.57136696296173	-0.53912881524017	0.294773118582039	0.606879813945882
Merged-chr11-115004249-4	chr11	115004151	115004351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2371.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	6.95378754378348	7.06309714070733	7.26183926427183	6.93886288688235	6.80762759997399	6.69085692520322	6.98238090867913	7.08424425562289	-0.215974865509428	0.292025663621445	0.604488172040016
Merged-chr1-88224255-4	chr1	88224154	88224354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2766.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	7.15103150868579	7.26794743456508	7.64055315215333	7.74991261899089	7.68814557053919	7.56718399683875	7.78270731193633	7.92685090818105	0.342962225034075	0.100440866478519	0.347921492320569
Merged-chr12-54791245-3	chr12	54791161	54791361	+	751.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026998, intron 2 of 13)	RMER17D|LTR|ERVK	4401.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	4.22058800326054	4.186916731815	4.34241378782467	4.29655827338861	3.73654793414789	3.82825358482717	3.75497023911105	4.2601930407078	-0.950821542398173	0.0320567758106699	0.174942056691534
Merged-chr8-39427465-2	chr8	39427362	39427562	+	882.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	129482.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	4.76627395413261	4.33496391210515	4.26616951764842	4.81002237423554	3.04308686851317	3.64472722649514	3.27957861608489	3.28817781735105	-4.6606503736703	2.47414886153529e-05	0.000613377384242814
Merged-chr2-26502490-3	chr2	26502410	26502610	+	792.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 1 of 33)	CpG	1312.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	3.27596545991641	3.26181448838508	3.21757899187675	3.39767246375929	3.30103764652757	3.13163757728027	3.47286858442402	3.27469516852804	0.0172040395022045	0.974359743879715	0.990880609058694
Merged-chr10-20058278-4	chr10	20058173	20058373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 9 of 29)	intron (NM_008580, intron 9 of 29)	-90647.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	5.87530443015236	5.67940155718791	5.63277268017744	6.09401043594343	5.59338627306586	5.98207889495135	5.65664125086862	5.42569105570034	-0.28705071289573	0.311573005348387	0.623627887849188
Merged-chr9-32562621-4	chr9	32562539	32562739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21187.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	5.87441490955799	5.98363074497816	6.06640918179219	6.16791654458356	5.78973293755164	5.30299025414956	5.75094954380041	5.87126326763198	-0.535972832422045	0.0443650450829796	0.214787387362031
Merged-chr10-77970647-4	chr10	77970529	77970729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138301)	promoter-TSS (NM_138301)	-757.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	7.78129038503021	7.75472622254996	8.35026463589091	8.12540718150884	7.62798582857258	7.6683342175777	7.98093469099023	7.73719740302856	-0.349353082853355	0.0844202718126591	0.316131232844722
Merged-chr19-4215360-5	chr19	4215220	4215420	+	939.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310039, intron 1 of 2)	CpG	931.0	NM_001310039	56708.0	Mm.347919	NM_019952	ENSMUSG00000040663	Clcf1	BSF-3|Bsf3|CLC|NNT-1	cardiotrophin-like cytokine factor 1	protein-coding	3.71607284629089	3.83257026936448	3.81943929604072	3.47685222202526	3.60130050651769	4.03736515828645	3.59130644004958	3.91219930051466	0.253803869995892	0.600273382303817	0.826760171717672
Merged-chr1-9944918-2	chr1	9944771	9944971	+	792.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024067)	promoter-TSS (NR_024067)	-753.0	NR_024067	73824.0	Mm.28311	NR_024067	ENSMUSG00000098234	Snhg6	1110008H02Rik	small nucleolar RNA host gene 6	ncRNA	3.29279911877749	3.06795568180879	3.34658229022731	2.70282878883483	3.45500703794896	3.09941968862654	3.16742071250878	3.17784915767447	0.435404811847695	0.485266474786522	0.759216653544759
Merged-chr12-79168539-3	chr12	79168456	79168656	+	998.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016800, intron 1 of 5)	intron (NM_016800, intron 1 of 5)	3902.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	5.4339386679252	5.28350618164597	4.97095265619872	5.12211165567525	3.21403301879787	3.58141642977533	3.51614189235139	3.52690541684826	-7.93249538666787	8.83814686550862e-14	1.17281018472696e-11
Merged-chr18-11773763-2	chr18	11773667	11773867	+	655.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65507.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	3.7247253211022	3.24582731415414	3.30351020853887	3.70326948638362	2.93202090277926	3.14218500481738	3.351472135414	3.89038070903326	-0.42444338391134	0.510186408481529	0.774557190395275
Merged-chr2-131142797-4	chr2	131142690	131142890	+	906.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028306, intron 10 of 12)	intron (NM_028306, intron 10 of 12)	15378.0	NM_028306	72630.0	Mm.277465	NM_028306	ENSMUSG00000074793	Hspa12b	2700081N06Rik	heat shock protein 12B	protein-coding	3.85740446323672	3.79819114025359	3.57746683680296	4.05238847653319	4.10379347097896	3.87183652021166	3.68308461307491	4.08557754872101	0.293997765439102	0.534184544230015	0.789066961676578
Merged-chr2-29346728-4	chr2	29346613	29346813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026896)	promoter-TSS (NM_026896)	-97.0	NM_026896	68975.0	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding	6.17893925980332	6.19871814654735	6.18003438927419	5.87706541649141	5.86194104523418	5.98932368469772	5.96818682061452	5.70393117046444	-0.344568173704131	0.168239233716609	0.460191392541484
Merged-chr5-136087505-4	chr5	136087429	136087629	+	828.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	3613.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	3.64507172013377	3.80082312612582	3.59119233677718	3.36876482798057	3.97810063827448	3.59125751896853	3.40151256928083	3.7938481900076	0.352363317497507	0.491029682439823	0.762703477030731
Merged-chr11-117338687-3	chr11	117338570	117338770	+	956.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113488, intron 1 of 9)	intron (NM_001113488, intron 1 of 9)	6357.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	4.05436365561142	4.25085592428545	4.77613217689094	4.53031084502614	3.79127151890992	4.0164811044725	3.98641379923455	4.05256437093261	-1.22008416132053	0.00598218187916809	0.054121425884371
Merged-chr2-30132125-3	chr2	30132011	30132211	+	879.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1635.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	3.11472013937211	3.34720793583193	2.83328167849754	2.50015759619256	3.62159212426558	3.46690695567411	3.22375193170059	3.17569384883401	1.4606003541433	0.0366368713729617	0.190534445138712
Merged-chr6-136742516-3	chr6	136742387	136742587	+	968.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145067, intron 10 of 25)	intron (NM_145067, intron 10 of 25)	39255.0	NM_145067	14917.0	Mm.222729	NM_145067	ENSMUSG00000042638	Gucy2c	AI893437|GC-C|Gcc	guanylate cyclase 2c	protein-coding	4.70683480539052	4.854443823585	4.43472531701778	4.94066101229783	4.39291125275328	4.21551266699575	4.1271602003083	4.2947172346081	-1.12748899674909	0.00387174471421327	0.0390626388395445
Merged-chr2-165855800-4	chr2	165855709	165855909	+	975.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	2364.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	5.2694519972594	4.67384973044151	4.64738963383657	4.72802192136303	5.25800885854083	5.26650679763888	4.90293991337694	4.92337766989729	0.501915479690635	0.151712749207513	0.435412422442889
Merged-chr1-105991352-5	chr1	105991300	105991500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001122676, exon 1 of 14)	exon (NM_001122676, exon 1 of 14)	994.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	5.58801809650583	5.9459633799072	6.63272361361194	5.92125810630486	5.82646282912893	6.01617435020707	6.1368045235971	6.44110578724974	0.0701656821605833	0.821464668475642	0.931705365734942
Merged-chr15-88862022-4	chr15	88861926	88862126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145478)	promoter-TSS (NM_145478)	-168.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	9.00997273670563	9.2080549416591	9.18002090388499	9.01724111294905	9.03371213470668	9.13858634804282	9.11486356855789	8.99868035033562	-0.0415741230695126	0.769702451767697	0.909839341090846
Merged-chr5-115559415-4	chr5	115559297	115559497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007475)	promoter-TSS (NM_007475)	-70.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	8.47187385976129	8.74318530909156	8.41756350875572	8.20036338731586	8.41082922344866	8.55327063522572	8.40398353362938	8.10904998251801	-0.113997836365196	0.539786404208319	0.792406302070178
Merged-chr18-3004660-3	chr18	3004567	3004767	+	908.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	118745.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	3.91508895977518	4.03856626659135	4.79434887374875	4.05586676313851	3.47016528896971	3.55552366434864	3.42247680199802	3.86162408914076	-1.91108289221954	0.000416436854631016	0.0066445996134905
Merged-chr15-91191436-4	chr15	91191344	91191544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001358967, exon 1 of 10)	exon (NM_001358967, exon 1 of 10)	563.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	5.26850713605831	5.35495669796822	5.20599482808366	5.40971869696872	5.23144257561427	5.41219612271755	5.36072553651957	5.26578126592313	-0.0151456570619379	0.957463905466485	0.984845712820794
Merged-chr9-50834164-3	chr9	50834045	50834245	+	801.518494	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045601, intron 13 of 13)	intron (NR_045601, intron 13 of 13)	-22779.0	NM_001034085	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	3.23256226619288	3.32341988235363	3.50733252383909	3.50186758364522	2.92313725782022	3.34561286831259	3.22147142569735	3.45493182342386	-0.565747064870314	0.323282361634001	0.634748847477286
Merged-chr4-108295362-4	chr4	108295248	108295448	+	820.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033634, intron 1 of 13)	intron (NM_001033634, intron 1 of 13)	5742.0	NM_001033634	414872.0	Mm.426241	NM_001033634	ENSMUSG00000034636	Zyg11b	1110046I03Rik|2810482G21Rik|D4Mgi23|Gm431|mKIAA1730	zyg-ll family member B, cell cycle regulator	protein-coding	3.96857775949404	4.02379781094131	3.91758449044615	4.12770435454229	3.97793632045949	3.74368668518254	4.3734884772978	4.2386309036541	0.223234021215496	0.614302740301018	0.833796543880561
Merged-chr9-45095311-3	chr9	45095213	45095413	+	978.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005421, intron 6 of 10)	intron (NM_001005421, intron 6 of 10)	16130.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	4.90109531957196	4.99539833094207	4.2755921897514	4.7802110509232	4.26203305176202	3.955793594059	3.93987991703272	3.9530434645319	-1.72870491748789	9.78556689564054e-05	0.00199420381453118
Merged-chr9-100474175-3	chr9	100474060	100474260	+	955.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033543, intron 2 of 6)	intron (NM_001033543, intron 2 of 6)	12313.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	3.46361601474326	4.04344028826073	3.82942763471344	2.80268646102547	3.72498011320616	3.58382648635929	3.56429493621497	3.40082887420248	-0.171108190367553	0.790383225436657	0.918829338045187
Merged-chr6-131387734-4	chr6	131387644	131387844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011733, intron 1 of 8)	intron (NM_011733, intron 1 of 8)	706.0	NM_139117	56449.0	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	5.65581180181293	5.68001955713531	5.41186244408664	5.88737528480007	5.28405338979233	5.361602342562	5.62823945771794	5.54975855010335	-0.395554312607269	0.165832557674387	0.456772663351364
Merged-chr12-111699463-4	chr12	111699377	111699577	+	953.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13476.0	NM_001324481	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	5.1623941287724	5.51264253993866	5.65932655299845	5.55245076280475	4.90865389171127	5.0012020619081	5.63028375905156	4.94009839922053	-0.604129251728094	0.0731707193796167	0.291124574327654
Merged-chr15-75940981-4	chr15	75940876	75941076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030199)	promoter-TSS (NM_030199)	24.0	NM_030199	78834.0	Mm.273264	NM_030199	ENSMUSG00000050846	Zfp623	2610029D06Rik|AI847036	zinc finger protein 623	protein-coding	6.81311267774817	7.07331941241693	6.53802968339762	6.74505297508892	6.77885039115264	6.78188336778505	6.6945372866002	6.73865110233856	-0.0820758300517953	0.698275618237816	0.878303994693932
Merged-chr12-57252798-4	chr12	57252714	57252914	+	861.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164370, intron 1 of 9)	L1_Mur3|LINE|L1	22389.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	3.35606396801308	3.25726485302021	3.65375501685102	3.75960169377481	4.09990608162926	3.59962161137116	3.83352643471163	3.70376609741022	0.88239999252181	0.0967904582328178	0.340770106705898
Merged-chr15-67088303-1	chr15	67088203	67088403	+	561.5	f0_balb.idr	Intergenic	MER53|DNA|hAT	88579.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	3.1501898954161	3.0252628011051	3.043006381005	2.84015149263766	2.72316488120764	2.75852691067557	2.85275060568069	2.92391573728328	-0.901733741939025	0.150753789449367	0.433643321043301
Merged-chr9-46120108-4	chr9	46120038	46120238	+	991.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	107318.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	5.12934377380469	5.60489439864717	5.43565859163114	5.68899017363493	5.07794436839192	4.95938167813533	5.46101635203452	5.01896987396091	-0.635221561893815	0.0469216980738047	0.222745067840159
Merged-chr11-85671301-3	chr11	85671192	85671392	+	820.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	48452.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	3.72957356657736	4.0723179102411	3.98019518491641	4.00753944225863	3.46442377560179	3.67073573146181	3.8693937803803	3.9777269286363	-0.591186895195829	0.214791475641527	0.520783542074744
Merged-chr12-85599318-4	chr12	85599220	85599420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030887)	promoter-TSS (NM_030887)	-96.0	NM_030887	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	7.6578441654197	8.06217710574786	8.00896118925987	8.08747784459602	7.7670457525759	7.98547102687644	8.18853641181136	7.590954226536	-0.0898613656178004	0.652927270422294	0.854817359133838
Merged-chr19-14635463-4	chr19	14635378	14635578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37295.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	5.99937826008615	5.95376574373939	6.1958210945411	6.08307723500069	5.89915802995525	5.75403648697975	5.92682843952541	5.73834545482458	-0.358275580918888	0.139569134057383	0.415421568665655
Merged-chr15-63150110-2	chr15	63150000	63150200	+	815.666626	f0_balb.idr|f1_balb.idr	Intergenic	L3|LINE|CR1	329508.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	3.2711853225148	3.64143124408124	4.04591925941278	4.07712283459357	2.71999874340684	2.8694431405992	2.83188446523907	2.8380545030021	-5.95812550983457	7.06937433725203e-08	3.12346986934365e-06
Merged-chr6-116487019-4	chr6	116486932	116487132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-6579.0	NM_146912	258914.0	Mm.391507	NM_146912	ENSMUSG00000053391	Olfr211	MOR253-9	olfactory receptor 211	protein-coding	6.04800519938121	6.05569732621023	5.42085647161554	6.20435600557585	5.86100941006524	6.16074490494488	6.32590268246793	5.60492537822635	0.059547988751144	0.844221392568445	0.940887937958057
Merged-chr4-62869805-2	chr4	62869709	62869909	+	714.75	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-95765.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	3.85046635798884	3.26178824215465	3.81270385828944	3.65005767307229	2.74000962501093	2.82706644609932	2.79141073445991	2.87797823748618	-4.6055139456227	2.03129249504964e-06	6.62931538308749e-05
Merged-chr18-84681501-1	chr18	84681401	84681601	+	541.0	f0_balb.idr	intron (NM_023149, intron 2 of 11)	intron (NM_023149, intron 2 of 11)	558.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	3.70785604981543	3.60419323515908	3.65760455497803	3.05435016788897	3.76894462875523	3.72377597704538	3.64219659440332	3.54763296988012	0.485483869558894	0.366342064170008	0.670823521147519
Merged-chr2-122234427-2	chr2	122234328	122234528	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146126)	promoter-TSS (NM_146126)	-411.0	NM_146126	20322.0	Mm.371580	NM_146126	ENSMUSG00000027227	Sord	Sdh-1|Sdh1|Sodh-1	sorbitol dehydrogenase	protein-coding	4.17031208231906	3.91878591740452	4.08086487728611	4.2534576455524	4.17753222800814	3.9441153142926	3.75170871874253	4.25229627761343	-0.174257763382007	0.691688372092056	0.874644263031543
Merged-chr19-40659699-4	chr19	40659610	40659810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009848)	promoter-TSS (NM_009848)	-60.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	6.90645815699976	6.65698204080994	7.07742020701366	7.07188011543849	6.83996871120155	6.74300637886164	6.88561099209293	6.67531711185364	-0.215761355258555	0.30040781232264	0.612422387893833
Merged-chr13-9188782-2	chr13	9188689	9188889	+	660.333374	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-87736.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	3.80182757843336	3.41975840639122	3.65233302350617	3.63676964825216	3.57419661037502	3.82304980189672	3.68898701222255	3.65027944552827	0.155801528327107	0.743547704907802	0.898960594151983
Merged-chr16-22119720-4	chr16	22119648	22119848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	43551.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	6.51731502194115	6.82943869811088	6.53555777789154	6.91452044475385	6.71664904482455	6.4095108448041	7.1066758814938	6.64438663307614	0.0331285147062637	0.890434229089473	0.958997364311038
Merged-chr8-47676041-1	chr8	47675941	47676141	+	1000.0	f0_balb.idr	promoter-TSS (NM_023503)	promoter-TSS (NM_023503)	-882.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	5.02276432394038	5.22543765454177	4.87650625417242	4.65201070999228	5.38769547675314	5.26495642321742	5.21996302647783	4.98501228114796	0.536086089791626	0.104302728860308	0.355121206234951
Merged-chr12-77092642-4	chr12	77092544	77092744	+	922.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130396.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	4.9022047143274	4.84635500150402	4.53031022926144	5.12529782371735	4.30779653065421	4.42389481946472	4.63224712176147	4.52744412707839	-0.893240973264089	0.0165484894217237	0.11245989388475
Merged-chr2-32876875-3	chr2	32876764	32876964	+	787.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 1 of 13)	intron (NM_146119, intron 1 of 13)	730.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	3.47478001238147	3.48912739188042	4.01397567499956	3.61685789149311	3.30344111072275	3.27372179667674	3.34619636870634	3.35654496456536	-1.18046770665434	0.0283047116868683	0.161240582085602
Merged-chr15-97140222-4	chr15	97140120	97140320	+	830.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	27024.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	4.17266963021897	3.38525828018605	3.67424551176131	3.83723575846961	3.78160940754523	3.79336362453402	3.60387665994085	3.87691716511645	-0.086202806896103	0.864387117732703	0.949154442462998
Merged-chr5-124327591-4	chr5	124327492	124327692	+	891.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028310)	promoter-TSS (NM_028310)	380.0	NM_001081323	269702.0	Mm.60224	NM_001081323	ENSMUSG00000038126	Mphosph9	4930548D04Rik|9630025B04Rik|AW413446|AW547060|B930097C17Rik|C87456|MPP-9|MPP9	M-phase phosphoprotein 9	protein-coding	7.28242213120889	6.97409700633222	6.38763784140082	6.69347395336795	7.1937683521171	7.37733895120645	6.98141172235237	7.2065174878767	0.447266062181261	0.0642519083881877	0.269387205464029
Merged-chr16-55820690-4	chr16	55820590	55820790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 2 of 12)	intron (NM_001159395, intron 2 of 12)	1448.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	5.21413943296584	5.99663551218628	5.49708782846153	4.5798385098896	5.90621459354502	6.0144451475017	5.91252002627714	4.80684736643878	0.503808481396995	0.439332921695975	0.727224328838519
Merged-chr4-53118927-4	chr4	53118813	53119013	+	921.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	40982.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	4.05016536357916	4.29492743639526	5.33456083507622	4.76085998029648	4.31830266385055	4.17981754925563	4.46913945458448	4.15910299880098	-0.9292926505543	0.0521478138182019	0.237739655400358
Merged-chr10-57785955-4	chr10	57785784	57785984	+	983.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021272, intron 2 of 3)	intron (NM_021272, intron 2 of 3)	961.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	4.347975673648	4.51998353142405	4.76625241030549	4.55830376650501	4.3104661245463	4.52236125057249	4.32936813394669	4.04453892155263	-0.572290297822287	0.142498575458268	0.420117885206645
Merged-chr7-64142154-1	chr7	64142054	64142254	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-11681.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	4.73611117744899	4.52724046943533	4.49997335041402	4.25678831395567	4.76167959891876	4.79647663656743	4.52182581894178	4.76919127316147	0.481507297166806	0.184472814244813	0.481927271714437
Merged-chr6-143050393-4	chr6	143050263	143050463	+	931.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362117, intron 11 of 26)	intron (NM_001362117, intron 11 of 26)	49789.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	4.76107726363641	5.02462741557023	5.05735772718254	5.71552439485927	4.93806761857101	4.7198303406124	4.89453722053391	4.98622672297682	-0.62681914930252	0.0961109959188808	0.339743969929977
Merged-chr2-73467270-4	chr2	73467124	73467324	+	646.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-13335.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	3.8451523419563	3.55917481593865	3.84571444462139	3.98368515950401	3.68726804762216	3.86326867425731	3.67640426129844	3.84344112353665	-0.176769398500454	0.704290807067525	0.881196215574832
Merged-chr4-150341392-2	chr4	150341299	150341499	+	817.25	f0_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	MTA_Mm|LTR|ERVL-MaLR	59483.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	4.97053896735962	4.73430953888235	4.43937727329706	4.15097678270625	4.12282914400701	4.18518244498625	3.92694248246316	4.35100826522254	-1.06522912166666	0.0167402906536101	0.113373588591859
Merged-chr19-55866433-4	chr19	55866323	55866523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-28898.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	5.45855145147927	5.59804851928552	5.80797666297294	6.32168281533637	5.44015276729658	5.60740659651717	5.68154175647173	6.01856154742757	-0.264573147203658	0.412350885374344	0.707519131955945
Merged-chr18-53227767-4	chr18	53227640	53227840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17922.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	6.6742012850617	6.45987322042516	7.43936515199581	7.23075112030034	6.37653584830501	6.65046763272747	7.11703731984649	6.81855647807667	-0.349554658102459	0.222047390503923	0.53007047015725
Merged-chr11-19493444-5	chr11	19493305	19493505	+	969.753357	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	428130.0	NR_046037	74059.0	Mm.292321	NR_046037	ENSMUSG00000086025	4933406G16Rik	-	RIKEN cDNA 4933406G16 gene	ncRNA	4.10178577828437	3.70131317153448	4.40491980290291	4.32834125839027	4.26285118604372	4.32298237409104	3.93168444798666	4.36302057676727	0.158683963514279	0.72543606289316	0.890917794276411
Merged-chr2-93162156-4	chr2	93162068	93162268	+	886.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-25380.0	NM_001356536	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	4.02264511170592	4.1491375968144	4.49591809069669	4.56735870638069	4.19364635329265	4.4559149324224	4.8154741928632	4.41131329860205	0.330955407866257	0.436353090669849	0.725104204892846
Merged-chr4-88450288-4	chr4	88450159	88450359	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11333.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	5.18435654751375	4.60774532482905	4.99736396967745	5.27479743564583	4.89747299787889	4.82931435377509	5.00615936411431	4.88851877309107	-0.285320748779882	0.407125929798376	0.703537361109727
Merged-chr2-117027341-4	chr2	117027246	117027446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93725.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	5.49419653801966	5.84310419527651	6.1006395969445	5.59591869455762	5.53321249584959	5.45518600362047	5.46763738017116	5.4324128401683	-0.500030483509532	0.0797695282589512	0.305790351785
Merged-chr4-118152557-2	chr4	118152466	118152666	+	998.5	f0_balb.idr|f0_c57.idr	intron (NM_001161823, intron 12 of 21)	intron (NM_001161823, intron 12 of 21)	-17620.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	5.39733189825643	4.77955075861741	4.85130139642349	5.23357366690418	4.99765306058029	4.94873949775329	5.1127437674379	5.54171976224088	0.138479011980361	0.692633873159299	0.87499975964798
Merged-chr3-116130952-5	chr3	116130891	116131091	+	951.080017	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1303.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	3.94173155018973	4.39775149425272	4.79916248197171	3.93199277205308	4.09837292767933	4.42478497610869	4.13730694688158	4.37793370504654	-0.113764317131589	0.805370272988669	0.925171083261684
Merged-chr13-115210913-2	chr13	115210813	115211013	+	944.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108949.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	2.92275518555959	3.17179087575567	3.54293849079481	2.89178183439719	3.18547063219551	3.23580849156023	3.28358571978108	3.12168730620414	0.210172835739815	0.726126386691746	0.891025770427008
Merged-chr19-32389210-4	chr19	32389120	32389320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033198)	promoter-TSS (NR_033198)	4.0	NR_033198	67188.0	Mm.391160	NR_033198	ENSMUSG00000097787	2700046G09Rik	-	RIKEN cDNA 2700046G09 gene	ncRNA	6.56181710671554	6.52771040348748	6.61044587350912	6.46778169883076	6.61451486297791	6.6213465642233	6.5920980482283	6.70979926166642	0.142702062211628	0.479950098722682	0.755620431575299
Merged-chr4-148497824-3	chr4	148497732	148497932	+	865.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039554, intron 2 of 4)	intron (NM_001039554, intron 2 of 4)	2630.0	NM_001039554	654812.0	Mm.388929	NM_001039554	ENSMUSG00000028989	Angptl7	-	angiopoietin-like 7	protein-coding	3.68088635071576	3.43761579670874	3.68150089328982	3.80246886870805	2.79908882024193	3.12231113436444	2.92670614357591	2.85505451965111	-3.44104495258576	3.19380873978859e-06	9.96633547958843e-05
Merged-chr10-41810481-4	chr10	41810373	41810573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243075)	promoter-TSS (NM_001243075)	-101.0	NM_001162908	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	6.26400474348438	6.20016195467974	6.35756645689035	6.32651959552573	6.14662288932654	6.42187809471137	6.47525458022289	6.45559243270766	0.122670993476511	0.583867862961883	0.817485282428486
Merged-chr8-36347132-4	chr8	36347024	36347224	+	980.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97608.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	5.50268498122802	5.41241747866934	5.23346118225485	5.42638458915776	5.53058319522397	5.11710513922896	5.86467287251694	5.4724634491732	0.222311328098776	0.457872895452263	0.740871444087216
Merged-chr7-90039667-4	chr7	90039578	90039778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 3 of 5)	intron (NR_110365, intron 3 of 5)	10519.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	8.18378693311199	8.18576360162386	8.27788604686796	8.08409510216113	8.13220858674411	8.26895411927419	8.27742507552141	8.13062857195371	0.0282256673120529	0.855304164025495	0.945605960367573
Merged-chr7-19936200-4	chr7	19936101	19936301	+	871.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR53_Mm|LTR|ERVK	14542.0	NM_027308	70080.0	Mm.98583	NM_027308	ENSMUSG00000040498	Igsf23	2210010C17Rik	immunoglobulin superfamily, member 23	protein-coding	4.15348118041391	4.79428782477901	4.20743141275563	4.20957107622188	4.98555751946668	4.74375965350991	4.50989064865505	4.52802018638266	0.762124015313428	0.0608958794099596	0.26081640294371
Merged-chr5-121009672-4	chr5	121009558	121009758	+	755.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011286)	promoter-TSS (NM_011286)	-120.0	NM_011286	19894.0	Mm.181166	NM_011286	ENSMUSG00000029608	Rph3a	2900002P20Rik|AU022689|AW108370	rabphilin 3A	protein-coding	3.68333843695158	3.68967829236749	3.62750663695925	3.67618918103736	3.81520101189234	3.80230142460649	3.91622766371401	4.01866733867289	0.640860824854281	0.148873810334484	0.430746673512948
Merged-chr4-116557589-4	chr4	116557498	116557698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029868)	promoter-TSS (NM_029868)	-129.0	NM_029868	77110.0	Mm.41715	NM_029868	ENSMUSG00000034042	Gpbp1l1	5330440M15Rik|BC002292	GC-rich promoter binding protein 1-like 1	protein-coding	8.14668037204868	8.24722778569269	8.00981797989778	8.10081490333978	8.4370686126589	8.36856748980875	8.39182907053857	8.04552497798286	0.246379328740283	0.141181193755533	0.417999924725474
Merged-chr3-37312492-4	chr3	37312328	37312528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001255992)	promoter-TSS (NM_001255992)	18.0	NM_145825	207175.0	Mm.344708	NM_145825	ENSMUSG00000045031	Cetn4	-	centrin 4	protein-coding	7.40499218592042	7.01840773524735	6.99710253986579	7.45099982297193	7.19552822817254	7.17455476076032	7.35054058833683	7.09258406051604	-0.0516498246926499	0.801959282248869	0.923638204160753
Merged-chr4-141618012-4	chr4	141617907	141618107	+	904.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013780)	TTS (NM_001013780)	626.0	NM_145987	213989.0	Mm.34891	NM_145987	ENSMUSG00000043085	Tmem82	-	transmembrane protein 82	protein-coding	3.8792427446938	3.77576097197573	3.87979971209213	3.80768602410499	3.79027505253409	4.14766727534882	4.13421445330904	3.87754710222381	0.435905410385566	0.318633004158563	0.630502275525004
Merged-chr7-80081361-3	chr7	80081228	80081428	+	894.31665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001146000, exon 2 of 6)	exon (NM_001146000, exon 2 of 6)	-6071.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	3.62500613539798	3.43582948364824	3.47469440246287	3.58623915988163	3.03017210872948	3.35399331378447	3.29194580538766	3.47272724474111	-0.875490031969677	0.106200699461851	0.359143842027512
Merged-chr3-130804023-3	chr3	130803937	130804137	+	897.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73639.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	3.77775809957468	3.74628959086808	3.77832693380152	3.62204475834942	3.71486713850676	3.51199905452843	3.25581694240232	3.57274084297244	-0.618891185404085	0.220424096746411	0.528339398650081
Merged-chr19-61198708-3	chr19	61198609	61198809	+	645.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-22400.0	NM_001177513	633057.0	Mm.426097	NM_001177513	ENSMUSG00000094649	Gm7102	EG633057	predicted gene 7102	protein-coding	4.01230676339698	3.96297408238866	4.31345283597903	2.80724882290694	3.88009612916044	3.87465186077588	3.54537260614515	4.67300011843367	0.33167670320878	0.738509884205368	0.896777300917036
Merged-chr19-53424841-4	chr19	53424720	53424920	+	977.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34186.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	5.84256093597987	5.64742720655425	6.47520487682019	6.38655453333315	5.45628934166683	5.01425621847467	5.35398349927408	5.53111575190562	-1.29335605131253	6.13066487314333e-05	0.0013451744605594
Merged-chr9-59731297-4	chr9	59731216	59731416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19333.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	6.89807362246214	7.0780039020991	6.84649237521021	6.72357430597492	6.7895868723003	6.55709444687847	6.68469578473898	6.71411463050735	-0.270453060100351	0.190616969082931	0.489958299955004
Merged-chr7-75501001-4	chr7	75500912	75501112	+	952.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 1 of 36)	MTE2a|LTR|ERVL-MaLR	45478.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	5.01249374848508	5.21571276461137	4.83728456861443	5.12495499036737	5.09052910580159	4.81154666328087	4.61244898477248	4.71569706067496	-0.452092337271364	0.185696354863609	0.483585287292957
Merged-chr15-38651666-4	chr15	38651568	38651768	+	939.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-10236.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	4.72713306006134	4.37783708471393	4.29224811114962	4.69537632607749	4.7692173224602	4.66037771310315	4.87629104857525	4.86440132055413	0.523652697705316	0.146156308111631	0.426153525113786
Merged-chr2-93334523-4	chr2	93334435	93334635	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183180)	promoter-TSS (NM_183180)	-48.0	NM_183180	241556.0	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding	5.87888690419161	5.26563427263389	5.77170769324706	5.73173505761824	5.52065290393498	5.20602312054737	5.54813477780376	5.46205340328594	-0.400822768728733	0.172194544991647	0.465460474230468
Merged-chr16-91380455-3	chr16	91380384	91380584	+	986.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	7701.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	3.93510332565601	4.43364958301298	3.93577248715618	2.83503714329537	3.33147449292259	4.1978617475668	3.14502631945302	3.15349853071324	-1.04370084720841	0.370051074185659	0.674240142565428
Merged-chr2-13432199-4	chr2	13432099	13432299	+	753.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 22 of 66)	intron (NM_001081084, intron 22 of 66)	59677.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	4.55256029251642	4.28528487080455	4.35916969686942	4.50026909144916	4.06870772872338	4.14985342929936	4.16132777159917	4.31376761132645	-0.639707515248163	0.102268176284742	0.351150338628636
Merged-chr14-49019978-4	chr14	49019859	49020059	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207214, intron 13 of 17)	intron (NM_207214, intron 13 of 17)	-46590.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	5.68010939326609	5.43754020658008	5.75349595665849	5.87578294692524	5.59589790217119	5.45407479254306	5.17966072705442	5.9239817341762	-0.228566570394766	0.446355372117031	0.73208670202825
Merged-chr4-11455363-4	chr4	11455255	11455455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30603.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	7.22942949169759	7.0586568121622	6.83275099962328	7.4123554077161	7.15251065190041	7.18690533101101	7.15128824585429	6.92630789531013	-0.0760820951970633	0.718171300586668	0.887400659742356
Merged-chr7-135581300-3	chr7	135581195	135581395	+	799.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316678, intron 1 of 19)	intron (NM_001316678, intron 1 of 19)	-12186.0	NM_001316680	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	3.92333267345675	4.03976750702564	4.00975854313086	4.08385354266994	3.40235917220815	3.4961669984854	3.22967574229228	3.37814538015686	-2.12944776056389	4.85788316682164e-05	0.00110472608923705
Merged-chr10-7781010-4	chr10	7780902	7781102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346750)	promoter-TSS (NM_001346750)	-85.0	NM_001346750	215751.0	Mm.471825	NM_145418	ENSMUSG00000040006	Ginm1	AA589616	glycoprotein integral membrane 1	protein-coding	7.76373948923016	7.97139858371348	7.44816375595672	7.51714781095842	7.8697317628082	7.83703253846648	7.80249088441347	7.45299164161754	0.083701687767799	0.676608414093588	0.867222067684077
Merged-chr7-128412169-3	chr7	128412056	128412256	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 1 of 4)	intron (NM_026418, intron 1 of 4)	6016.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	2.97750229274273	3.28285183719258	2.97787064198864	2.82052206430163	2.88453633658699	3.08750897825811	2.90512136357327	2.91348894092017	-0.313231381950969	0.608188255991524	0.8303806010247
Merged-chr14-54876897-6	chr14	54876857	54877057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001167908, exon 1 of 2)	exon (NM_001167908, exon 1 of 2)	581.0	NM_001167908	105651.0	Mm.297365	NM_001167908	ENSMUSG00000072494	Ppp1r3e	A630071A11Rik|AW049239|Gm1211	protein phosphatase 1, regulatory (inhibitor) subunit 3E	protein-coding	5.2661439086401	5.21299758625028	5.13580389835976	5.06709066720016	5.33118319454305	5.74177988672936	5.17754102155087	5.54184663591171	0.528937132376966	0.076510163869066	0.298861223533948
Merged-chr1-55525735-2	chr1	55525634	55525834	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	MTC|LTR|ERVL-MaLR	119788.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	4.00231033886718	4.04625453933632	4.48600089950487	4.49601124360214	3.91065526252912	3.7903266877632	3.71786671809377	3.72967379194034	-1.3429248704547	0.0038696343225313	0.0390506735492711
Merged-chr3-145964187-4	chr3	145964070	145964270	+	941.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23700.0	NM_001166064	214804.0	Mm.268854	NM_001166064	ENSMUSG00000036863	Syde2	C430017H16Rik	synapse defective 1, Rho GTPase, homolog 2 (C. elegans)	protein-coding	5.52360946631931	6.09912830731663	6.25387339265268	6.00569556353743	5.09364869700101	5.26583188446359	5.27755296472009	5.97823540664243	-0.914185452438307	0.00614500176370304	0.0552406012299342
Merged-chr4-141347636-2	chr4	141347536	141347736	+	729.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-20556.0	NM_001085513	277743.0	Mm.294614	NM_001085513	ENSMUSG00000006218	Fam131c	Gm693	family with sequence similarity 131, member C	protein-coding	2.71216871000585	2.70380241188091	2.97058509437789	2.91899285279944	2.85714638906247	3.07994062080334	2.90024565968039	3.02614152796022	0.561176617159564	0.360376466775363	0.665793074685122
Merged-chr4-135946433-4	chr4	135946342	135946542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008254)	promoter-TSS (NM_008254)	-6.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	6.73319923505701	7.07022311935245	6.74951690534179	6.78059022430713	7.07975138502471	7.06827230063084	6.95948142002491	7.05025273924978	0.278895688618435	0.155867269349671	0.441705659838286
Merged-chr12-79612943-4	chr12	79612852	79613052	+	953.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	311781.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	4.63094903902454	4.75175341386893	4.08612862811029	4.37611842824129	4.5554200755979	4.5170050122851	4.41146894724951	4.59107665244448	0.0868608431377947	0.823290246966175	0.932247237471869
Merged-chr13-90089125-4	chr13	90089025	90089225	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025335)	promoter-TSS (NM_025335)	483.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	4.85445472844455	4.53690814865582	4.99142208487569	4.72016961958596	4.53126900151597	4.87844912586065	5.11728360553059	4.95533949341895	0.204849756192632	0.565586835188707	0.807629114072388
Merged-chr12-117476772-4	chr12	117476664	117476864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MARNA|DNA|TcMar-Mariner	-39715.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	5.75230036668446	5.43545549596266	5.51680785119901	5.19971735663283	6.09044240910554	6.04116873288602	5.81573503911461	5.48375972112503	0.685679184903531	0.0193718300672083	0.125249113666438
Merged-chr1-74250318-4	chr1	74250235	74250435	+	963.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 4 of 10)	intron (NM_001357387, intron 4 of 10)	13818.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	4.80129648807477	4.83457758747961	4.8383954725037	5.19221235566568	4.78246057134815	4.39224370135415	4.49444559112815	5.00228915198836	-0.505883452814435	0.171788680342199	0.465092483286196
Merged-chr7-102247153-4	chr7	102247048	102247248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	2970.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	5.90098326611195	5.92450368922873	6.22049830880508	5.74819644129236	6.20123833917304	6.5690359809562	6.27851967361329	5.96817896592113	0.497493152695717	0.0542444311814024	0.243247298372144
Merged-chr17-50588184-4	chr17	50588094	50588294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	MTD|LTR|ERVL-MaLR	78647.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	5.0181948191974	4.98316874594147	5.05499009234968	5.58250596647475	5.06043056751548	5.29891089761209	5.31320507036094	5.39155810739792	0.0997105068324564	0.765759575258329	0.908357650317684
Merged-chr15-79659083-4	chr15	79658967	79659167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029407)	promoter-TSS (NM_029407)	-111.0	NM_029407	75729.0	Mm.78946	NM_029407	ENSMUSG00000042564	Fam227a	4933432B09Rik	family with sequence similarity 227, member A	protein-coding	6.13467626330788	6.26019212946084	6.44854523280636	5.74797028833641	6.11095301168261	6.5736990992006	6.16511142486284	6.55292204153151	0.309483477693209	0.254256897127868	0.565605577061989
Merged-chr9-37147458-3	chr9	37147356	37147556	+	769.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148950)	promoter-TSS (NM_148950)	-134.0	NM_001029838	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	3.6169115938975	3.38550733275319	3.71177212718787	3.76025718588337	3.38927507265137	3.33040505627162	3.44779797230567	3.0774737202197	-1.06608967933695	0.0504155433887839	0.232930544130225
Merged-chr7-16453421-4	chr7	16453348	16453548	+	854.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026938, intron 1 of 2)	intron (NM_026938, intron 1 of 2)	669.0	NM_026938	69094.0	Mm.29633	NM_026938	ENSMUSG00000019158	Tmem160	1810008O21Rik	transmembrane protein 160	protein-coding	3.398614042111	3.29049550692312	3.87969214089087	3.49156276726932	3.58602237053673	3.69845757557238	3.61981441548605	4.08166164500478	0.702505627502902	0.176083065115997	0.471068221483845
Merged-chr1-105747374-4	chr1	105747215	105747415	+	965.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173187, intron 26 of 28)	intron (NM_173187, intron 26 of 28)	-33408.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	4.68340335566024	4.93791263970273	4.93943070285173	5.130313561439	4.99452832655757	4.85888805739888	4.39744967048913	4.36338793856356	-0.507004323456227	0.182224629277251	0.47878218634963
Merged-chr2-29624136-4	chr2	29624029	29624229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	4409.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	6.22233242762657	6.06692321156075	6.03781048646411	6.17650124475986	6.36794975260972	6.27851816854928	6.40179047576187	6.16002415881151	0.270015855890346	0.229264128496695	0.538147718053893
Merged-chr18-30365808-4	chr18	30365704	30365904	+	854.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92939.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	4.33159792387448	3.93375451407985	4.23887598682849	4.74265366237436	4.31879156472494	4.41475221259219	4.62716711140217	4.57444948210137	0.276123865827703	0.52392270231824	0.782678742172855
Merged-chr3-108061546-4	chr3	108061456	108061656	+	960.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16697.0	NM_001160411	14865.0	Mm.31203	NM_026764	ENSMUSG00000027890	Gstm4	1110004G14Rik|GSTM7-7|Gstb-4|Gstb4	glutathione S-transferase, mu 4	protein-coding	3.99142896825253	3.93375648221802	4.18555782879872	4.04867446628878	4.20951079384121	4.43961941918294	4.12177126949232	4.35075349136815	0.612147625450806	0.127624266609429	0.397486990154572
Merged-chr5-77174962-4	chr5	77174856	77175056	+	989.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36249.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	3.93183559161065	4.30953171092623	3.80722504174035	4.2792532593188	4.37593362596819	4.67830836976915	4.69723837534813	4.65048147659782	1.13184074171219	0.00760113179283708	0.0647707475520809
Merged-chr14-63446106-1	chr14	63446006	63446206	+	692.0	f0_balb.idr	intron (NM_177628, intron 2 of 3)	intron (NM_177628, intron 2 of 3)	9712.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	3.46271277885851	3.53211670753997	3.57430822997789	3.5860513838538	3.37889504401816	3.38994613694648	3.50622917859537	3.93855552474583	0.0957083870136922	0.852017067925068	0.94421936565126
Merged-chr7-75796556-4	chr7	75796423	75796623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51815.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	5.7254102411329	5.79971461294454	5.75088306815277	5.64819892466999	5.74236634914712	5.87557941409769	5.59539465065394	5.61961988741135	-0.0220600937238937	0.931149796776261	0.975254729027921
Merged-chr8-122557897-4	chr8	122557798	122557998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-6569.0	NM_001357349	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	6.31102605110742	5.99438781002313	6.56744840416351	6.59151600259578	5.62172857073084	6.09886913879196	5.81652520942182	6.21585757409204	-0.684517631604676	0.0127556155690523	0.0938916195025413
Merged-chr1-91498808-4	chr1	91498705	91498905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028718, intron 2 of 14)	PB1D10|SINE|Alu	4137.0	NM_028718	74019.0	Mm.318430	NM_028718	ENSMUSG00000034292	Traf3ip1	3930402D05Rik|AU041749|MIP-T3	TRAF3 interacting protein 1	protein-coding	5.5041322455947	5.3916955547904	5.3622755783542	5.77788618518645	5.58007113323366	4.99026935283264	5.65226038766898	5.3279983608339	-0.195652115903299	0.531225254871769	0.787095803840917
Merged-chr4-45409539-4	chr4	45409439	45409639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001009949)	promoter-TSS (NM_001009949)	-773.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	5.49560054887218	5.68130644632735	6.0266834564359	6.03765563257173	6.14180358864524	5.84909366179643	5.93276994018795	6.06292352554374	0.25942186130132	0.333893975578249	0.644625911590891
Merged-chr13-51645667-4	chr13	51645565	51645765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025415, intron 1 of 2)	CpG	433.0	NM_025415	66197.0	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	5.83717619127541	6.41513390897451	6.33145801683853	5.53211527495187	6.3577345737821	6.06489318754833	5.90462759987758	6.06318172281399	0.0711651279855707	0.813639191939428	0.928005256510593
Merged-chr7-98805057-4	chr7	98804958	98805158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30054.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	8.21542903001761	7.78054744675325	8.49443493833147	8.17975961939256	7.86833860930539	7.97388537332868	8.17794509113966	7.87652072493166	-0.271046313376588	0.170974748919645	0.464071524304126
Merged-chr2-38346556-4	chr2	38346470	38346670	+	793.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290646, intron 1 of 4)	intron (NM_001290646, intron 1 of 4)	-4738.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	4.02148471012123	4.16055628519424	3.96860239130123	4.78794791663893	4.23738538161768	3.91584166443669	4.19776075296181	4.38220835014771	-0.259140555689608	0.5867958831427	0.818903628768642
Merged-chr19-44284283-4	chr19	44284178	44284378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9398.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	7.92794479997523	8.13603489169157	8.02282770757038	7.79083138989218	7.68552312889217	7.55855291602877	7.79767145017136	7.5646611035052	-0.407764624587758	0.0202489653727966	0.129114136546653
Merged-chr17-57363031-4	chr17	57362940	57363140	+	815.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 2 of 22)	RLTR22_Mur|LTR|ERVK	4354.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	4.39926515381915	4.64466059950865	4.48485724870904	3.90088643592385	4.31567012547365	4.69734018618655	4.61695970220657	4.44024589611286	0.338666805329683	0.419143168881559	0.712251159515261
Merged-chr15-97373378-4	chr15	97373317	97373517	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 4 of 5)	intron (NM_172293, intron 4 of 5)	-126130.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	3.86462778274358	3.95897819346121	3.9213096452189	3.98670176639148	4.48679219886139	4.46962402709145	4.15260803099157	4.25622335897211	1.04323998184579	0.0101926227095977	0.0800066929693931
Merged-chr9-110841586-4	chr9	110841471	110841671	+	837.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153172)	TTS (NM_153172)	-2935.0	NM_183103	74306.0	Mm.87419	NM_183103	ENSMUSG00000049719	Prss46	1700112C13Rik|79H19B|Tessp6	protease, serine 46	protein-coding	4.46537747494942	4.34780884192885	4.65450514826065	4.47740194899581	4.30101399003837	4.55448765765814	4.07507073238904	4.37932487375171	-0.358943305305006	0.352449732493485	0.659568292805988
Merged-chr14-54386145-3	chr14	54386047	54386247	+	872.477783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	23325.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	4.18315255732841	3.80285947767245	4.22352773988097	4.55877992696581	3.65356801060101	3.82104846090834	3.43182390204105	3.4411827434586	-1.84895230609201	0.000396273478357823	0.00639744838195315
Merged-chr4-109271973-4	chr4	109271877	109272077	+	969.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8298.0	NM_007943	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	4.64083251482112	4.83021024141464	4.51076320039961	5.03298695803079	4.76035740591221	4.85631410316283	4.81075198302562	4.83058666749636	0.0417594134735392	0.905308358748287	0.964857060871205
Merged-chr10-30771293-3	chr10	30771171	30771371	+	613.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 2 of 14)	intron (NM_001358842, intron 2 of 14)	32055.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	3.70523365807541	3.2728728359852	3.50043854644777	3.3735584388332	3.54186504306465	3.61667772515473	3.4867930872578	3.65528698383928	0.365985799320001	0.463612116277419	0.744914352992271
Merged-chr15-83172303-4	chr15	83172208	83172408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029787)	promoter-TSS (NM_029787)	-100.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	8.40942350675382	8.47934109282849	8.08755882622558	8.32564475997353	8.29093258742887	8.6929926794615	8.38193482911804	8.3896814760066	0.138406853252263	0.426025459469307	0.717440702665574
Merged-chr9-96636661-4	chr9	96636519	96636719	+	958.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5116.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	4.7521628874679	4.43920622454102	4.78851193468634	4.33999361688625	4.52965493810995	4.8129498742149	4.57847944454925	4.85341603029554	0.257092208994076	0.486784375716699	0.7603696580653
Merged-chr2-133467930-4	chr2	133467837	133468037	+	945.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84222.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	5.11670484740057	4.91813393900931	5.35466029862364	5.21529092165932	5.07562574682178	5.08117740171757	5.42962240340759	4.86393526291806	-0.0620288618130549	0.84771323814918	0.942405244322247
Merged-chr4-133513168-4	chr4	133513068	133513268	+	771.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5795.0	NM_001083916	69073.0	Mm.299081	NM_133707	ENSMUSG00000037600	Kdf1	1810019J16Rik	keratinocyte differentiation factor 1	protein-coding	4.08179075022043	4.14806755089507	3.87867363009123	3.77941437223092	4.06614609755163	4.29956730825774	4.0171506827186	4.29584919740196	0.530892308536998	0.211078109536402	0.515716175112166
Merged-chr10-128411620-4	chr10	128411504	128411704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104288)	promoter-TSS (NR_104288)	-12.0	NR_104288	67588.0	Mm.294120	NM_026259	ENSMUSG00000025373	Rnf41	2210404G21Rik|4930511A05Rik|4933415P08Rik|D10Ertd722e|FLRF|Nrdp1	ring finger protein 41	protein-coding	8.47028191152845	8.47479781535889	8.14414239585119	8.31356417722168	8.44081378877314	8.49069139188386	8.49992076048254	8.60241699574574	0.19090938871763	0.226919014205748	0.535604327821614
Merged-chr5-142932478-4	chr5	142932363	142932563	+	975.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25709.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	4.94712229959514	5.36682488769608	4.86331573843157	5.33383846941134	5.76398618575629	5.54103641347374	5.50475653493479	5.80791057421422	0.868578203453584	0.00476917993636041	0.0458737106338105
Merged-chr8-70631612-4	chr8	70631521	70631721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001330687, exon 2 of 3)	5' UTR (NM_001330687, exon 2 of 3)	474.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	5.71579005781323	6.37783521442546	6.31667518745067	6.29851479686988	6.70160787149059	6.49258075927184	6.5021078344804	6.13478165198398	0.401441131508459	0.124302172121831	0.391259263361566
Merged-chr7-24975410-4	chr7	24975288	24975488	+	797.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2660.0	NM_010261	14470.0	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	4.48495657805847	4.31851889554749	4.00623174746912	3.97007909312894	4.03099695553935	3.96063569810988	4.2701092677796	4.44591934221595	-0.0365198300890265	0.933407123389854	0.975967471696899
Merged-chr4-130816941-3	chr4	130816862	130817062	+	699.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011520, exon 2 of 5)	exon (NM_011520, exon 2 of 5)	24425.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	3.67673697545645	3.48990763262354	3.82256472439322	3.8057870410909	3.28272886004603	3.57001695518777	3.38011135224248	3.9083075315636	-0.486592451947048	0.354935118288372	0.661579026385505
Merged-chr3-79842771-4	chr3	79842671	79842871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027495)	promoter-TSS (NM_027495)	-109.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	7.06404175654576	7.15612602064183	7.28648056033594	7.25760633627357	6.87143737523155	7.08824824889668	7.04168782781585	6.99833148019606	-0.277289820978162	0.138908632106595	0.414457946133613
Merged-chr12-51835247-3	chr12	51835166	51835366	+	638.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5730.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	3.41689079998944	3.0920055959514	3.36852454958284	3.53650503931553	2.69909688856901	2.92618666455338	2.95190634972173	3.02623105635966	-2.05792434457255	0.00162988629578821	0.0199507612464159
Merged-chr2-170252727-6	chr2	170252594	170252794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103667.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	4.825870971629	4.64875198819819	5.00440076867823	4.82681464462082	4.89083718284037	4.96428482019172	4.59960340313505	5.51070795480901	0.400623134358876	0.274636869508245	0.586395867106146
Merged-chr3-108840650-4	chr3	108840582	108840782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011504)	promoter-TSS (NM_011504)	-180.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	7.00269792392485	7.32954001605019	6.7224815680393	6.74196836551468	7.16079370468194	7.30059041672273	7.04171321066415	7.13045247968134	0.264048020795777	0.228459270297517	0.537321649501288
Merged-chr2-43784012-4	chr2	43783947	43784147	+	774.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 2 of 14)	intron (NM_001301831, intron 2 of 14)	35223.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	3.44244632605954	3.78171328259239	3.49942270840982	3.42795689686344	3.48407390436886	3.43514306362461	3.68728952564985	3.38212411121208	-0.132530137342696	0.793898991885614	0.92022175040272
Merged-chr11-3428990-3	chr11	3428888	3429088	+	793.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110959, intron 1 of 5)	intron (NR_110959, intron 1 of 5)	-19750.0	NM_010718	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	3.78629844083946	3.59285449312535	3.68901268757812	3.75358561913811	3.40372387148928	3.75461583029447	3.51346574346718	3.58108389151146	-0.46927928788805	0.331779716035665	0.642849806093321
Merged-chr7-19692711-4	chr7	19692627	19692827	+	939.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007469)	promoter-TSS (NM_007469)	-68.0	NM_007469	11812.0	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	4.44859580884583	4.09760045062875	4.6492690129608	4.65015888822987	4.5519213887798	4.53517078970703	4.51219146755465	4.71798158971621	0.204482755200482	0.593210528195772	0.822553370861762
Merged-chr5-72199005-4	chr5	72198916	72199116	+	670.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-4313.0	NR_003966	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	3.54859683642739	3.83503597188022	4.04708237191895	3.53823964365921	3.94198909745984	3.7842212736307	3.41092010483703	3.91451802884657	0.0901901202030551	0.858851685964917	0.946576014812915
Merged-chr11-67080392-3	chr11	67080297	67080497	+	760.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099635, intron 3 of 40)	intron (NM_001099635, intron 3 of 40)	2097.0	NM_001099635	17883.0	Mm.340090	NM_001099635	ENSMUSG00000020908	Myh3	MyHC-emb|Myhs-e|Myhse	myosin, heavy polypeptide 3, skeletal muscle, embryonic	protein-coding	3.39604114382102	3.16858141398015	2.72477645693261	3.22252500520925	2.93644717646623	3.24440505361591	3.06199716071366	3.07140914599322	-0.278182520592308	0.659611601513992	0.85840559802842
Merged-chr10-80074337-4	chr10	80074253	80074453	+	767.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 4 of 31)	intron (NM_001359635, intron 4 of 31)	1086.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	3.88445329213844	3.98139964003887	3.72190735819128	3.55480847422122	4.13233563525227	4.10708482493192	3.81728446448775	4.15734307882792	0.774418854693403	0.0844061167720126	0.316131232844722
Merged-chr8-79294965-4	chr8	79294842	79295042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133823)	promoter-TSS (NM_133823)	14.0	NM_133823	109136.0	Mm.26510	NM_133823	ENSMUSG00000037022	Mmaa	2810018E08Rik|AI840684	methylmalonic aciduria (cobalamin deficiency) type A	protein-coding	8.95953295710723	9.03040742093149	9.14502683928941	8.85078560601715	8.84573906314906	8.95605340584197	8.98770966984978	8.75625927247509	-0.134964152940027	0.371034271386881	0.675115631868064
Merged-chr18-9392797-4	chr18	9392694	9392894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026484, intron 1 of 9)	intron (NM_026484, intron 1 of 9)	57360.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	5.82417216372427	5.26919705454763	5.43830683747864	6.03798202578541	5.93058491505968	5.615191907229	5.44081540922321	5.40404715353334	-0.115241040816772	0.721206753590256	0.888698419669705
Merged-chr14-118700180-4	chr14	118700063	118700263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 1 of 29)	MTC|LTR|ERVL-MaLR	6056.0	NM_001163676	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	5.66072849539126	5.56443901145402	5.5469313487998	5.56328455513215	6.25734245214496	6.01691149575206	6.32816510363683	6.1138510878196	0.970096178576355	6.24905001439084e-05	0.00136567740550914
Merged-chr16-33967473-3	chr16	33967336	33967536	+	656.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009471)	promoter-TSS (NM_009471)	-398.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	3.42219166993967	3.56115597303162	3.47687450206704	3.3915730560275	3.44194385261136	3.59206213467557	3.23410350077389	3.17852767076851	-0.306227916655035	0.560602842985535	0.804563871297431
Merged-chr16-8459347-3	chr16	8459234	8459434	+	742.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11479.0	NM_146247	239706.0	Mm.214953	NM_146247	ENSMUSG00000039345	Mettl22	-	methyltransferase like 22	protein-coding	3.5988957552945	3.5484180176021	3.59941697989668	3.28742917255569	3.35260073068754	3.66420128032347	3.36324108241741	3.64765315188164	0.0204291307067024	0.968278313075371	0.988694268692349
Merged-chr15-6242303-4	chr15	6242189	6242389	+	977.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57500.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	4.96946841050657	4.61666893981416	5.15845300186792	4.9537974111475	4.76243807930869	5.00157161006197	4.84137238960324	4.96693002277502	-0.0912035444214923	0.78519397506205	0.916425455265614
Merged-chr8-122830587-4	chr8	122830492	122830692	+	867.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17782.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	4.02400699468308	4.00508046057178	3.58818719428753	4.16289902082643	4.26659217389126	4.60610210955567	4.24905041016656	4.85728977085089	1.31009296059379	0.00488756827065189	0.0467471408138579
Merged-chr13-64274817-7	chr13	64274703	64274903	+	970.789124	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172587, exon 1 of 14)	5' UTR (NM_172587, exon 1 of 14)	185.0	NM_172587	218294.0	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	4.62347892885834	4.90729870500609	4.99366381913662	4.83552705934054	4.88737610834677	4.66825822884486	4.76251212790489	4.957817665896	-0.0383516877145268	0.908370589880734	0.966039998613106
Merged-chr7-34126047-4	chr7	34125935	34126135	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207212, intron 1 of 7)	ORR1E|LTR|ERVL-MaLR	7233.0	NM_207212	101543.0	Mm.422738	NM_207212	ENSMUSG00000036459	Wtip	-	WT1-interacting protein	protein-coding	5.12415602920801	4.73414348677651	5.29883608120437	5.7968893581354	4.48644870973543	4.229478018477	4.89954725442241	5.0578318321414	-1.16874771379557	0.00639634888645308	0.0569099043620644
Merged-chr11-72301593-4	chr11	72301510	72301710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037713)	promoter-TSS (NM_001037713)	-19.0	NM_001291153	327959.0	Mm.291131	NM_001037713	ENSMUSG00000040483	Xaf1	Fbox39	XIAP associated factor 1	protein-coding	5.85525112444939	5.94498541251976	6.37418380144448	6.01564626954187	5.61611737963664	5.8285317789301	5.84985526187015	5.87562704078037	-0.431751182037909	0.0969743720120433	0.341152514478586
Merged-chr1-153894444-4	chr1	153894355	153894555	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2809.0	NM_178244	240819.0	Mm.453236	NM_178244	ENSMUSG00000047053	Teddm1a	Epdd1|Teddm1|e9-1	transmembrane epididymal protein 1A	protein-coding	6.07403841072503	5.80148908905146	6.19946314865591	6.16473199961026	5.22053043899635	5.13682070055616	5.52087406910964	5.29596135421758	-1.30087098540101	2.79794788459416e-06	8.88292294725815e-05
Merged-chr4-46490029-2	chr4	46489929	46490129	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053179, intron 1 of 5)	intron (NM_053179, intron 1 of 5)	700.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	3.00285593939867	2.83524651777736	2.77772253467359	2.60219257622467	2.69736619212615	2.44645437557021	2.70536563355585	2.7763118232628	-0.698187739983817	0.310576233501931	0.622648313554358
Merged-chr10-81401891-4	chr10	81401795	81401995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 8 of 8)	intron (NM_026756, intron 8 of 8)	-7680.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	7.07876231880346	7.0703333742541	6.94202115824812	6.95558716794462	7.00008175799608	6.97953302127673	7.30021744582992	7.17753041011863	0.149187367739323	0.43641144110071	0.72511335456143
Merged-chr3-138145019-5	chr3	138144734	138144934	+	974.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348197, intron 1 of 8)	intron (NM_001348197, intron 1 of 8)	1035.0	NM_001348197	108943.0	Mm.471692	NM_175389	ENSMUSG00000004127	Trmt10a	3110023L08Rik|AA794508|Rg9mtd2|Rnmtd2	tRNA methyltransferase 10A	protein-coding	4.57330939959244	4.76713829739377	4.61516681175857	4.39827235499476	4.77215443442596	4.90253040535313	4.55312098757271	4.72804331108495	0.346904346264917	0.324489749895061	0.636100359119347
Merged-chr13-41572175-4	chr13	41572084	41572284	+	893.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34032.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	3.82433674237895	3.92048195329095	3.82483965454521	4.04850667278866	4.30289650782091	4.30002650007126	4.06598242694268	4.29626509960052	0.837701347584394	0.0456656459713562	0.219046769633746
Merged-chr8-80948933-2	chr8	80948846	80949046	+	1000.0	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	65960.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	6.82363179398527	7.0460115532366	6.92029922812704	6.73678991552293	6.97443687706417	7.22037813768089	7.03329168093419	6.79143320896307	0.182945306684222	0.370852629377132	0.675068605253279
Merged-chr2-148440051-4	chr2	148439954	148440154	+	909.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010740, exon 2 of 2)	3' UTR (NM_010740, exon 2 of 2)	3481.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	5.15368151891372	4.43694536815849	5.09619125124898	5.10229837610113	4.78950866085609	4.62898595929166	4.69315838764867	4.86396039603312	-0.469101845604071	0.198211674185899	0.499715972864178
Merged-chr3-51789015-4	chr3	51788934	51789134	+	848.1845089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	127855.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	3.89103552444811	3.60113738128305	3.94117772873273	4.16767599174109	3.85608270331791	4.06302810481734	3.97167088209877	3.93884698874547	0.0678390035552994	0.882505885202255	0.95575354370667
Merged-chr5-64229739-2	chr5	64229639	64229839	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289514)	promoter-TSS (NM_001289514)	-618.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	3.45381441186736	3.4517251292946	3.8361954419498	3.78230413532452	3.63364551724058	3.69243275328409	3.77192516702958	4.00949760947677	0.392741575142714	0.423571402802294	0.715474711788711
Merged-chr16-10489269-4	chr16	10489182	10489382	+	975.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243761)	promoter-TSS (NM_001243761)	-499.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	4.6336066776119	4.72542561396598	4.94374192763333	5.12737778495713	5.1446857242464	5.32949533668227	4.61415777138659	4.86933715748087	0.264995317791698	0.46994827450518	0.748767700026955
Merged-chr4-41361235-4	chr4	41361131	41361331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355508, intron 1 of 6)	intron (NM_001355508, intron 1 of 6)	9268.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	6.53250357559398	6.19582472675704	6.26364992024282	6.38840309610586	6.09007704336948	6.38133160912632	6.0720337251678	6.25917429027791	-0.231061894014358	0.317597268262835	0.629525367799507
Merged-chr11-110448736-7	chr11	110448655	110448855	+	943.3952640000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	-29760.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	4.03552535478439	3.39567988186933	3.34282510110069	3.10097715750433	3.56592759090954	3.70136193547983	3.7189863422239	3.579332051272	0.407691695498247	0.469529780651897	0.748378822236993
Merged-chr4-133631612-4	chr4	133631498	133631698	+	808.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 1 of 7)	intron (NM_001017968, intron 1 of 7)	1831.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	3.65058174038733	3.83523817125648	3.91013936866293	3.85432262030135	3.73029813471059	3.58262131880803	3.89321340238469	4.04094465096206	0.00894653007752157	0.984519966679636	0.994316877108323
Merged-chr14-55490631-3	chr14	55490529	55490729	+	873.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155103)	promoter-TSS (NR_155103)	-22.0	NR_155103	268747.0	Mm.151577	NM_001024645	ENSMUSG00000022211	Carmil3	Lrrc16b|mFLJ00240	capping protein regulator and myosin 1 linker 3	protein-coding	3.46778297492067	3.51366155570341	3.52067793911867	3.33735232844649	3.37543197402868	3.47090440448972	2.94467537204994	3.56885481241453	-0.338686994882673	0.549034774419567	0.797805237578026
Merged-chr10-80674849-5	chr10	80674777	80674977	+	926.957153	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021462, intron 2 of 13)	intron (NM_021462, intron 2 of 13)	1416.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	4.09938830813048	4.55163047746539	4.44761378581021	3.52361727375726	4.407198208783	4.50032443679272	3.6839840864082	4.19339021746929	0.0338390827350607	0.94900066031714	0.981673120801678
Merged-chr9-108726287-4	chr9	108726172	108726372	+	851.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008924, intron 4 of 10)	L1MA5|LINE|L1	34129.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	3.92387642628132	3.63138100778284	3.87272265281436	4.30633811618132	3.80220252797889	4.04664055724303	4.05021695142052	4.19460342500753	0.137001614603214	0.774077977432084	0.911716359199097
Merged-chr16-78236963-4	chr16	78236862	78237062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18492.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	6.97693680218541	7.28159370811431	7.37510365160899	7.46775154224205	7.23137735417831	7.16894966302877	7.10475489530732	7.28973751717947	-0.131554064742334	0.502392036751044	0.76965261578213
Merged-chr17-81380076-3	chr17	81379985	81380185	+	809.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104580, exon 9 of 9)	non-coding (NR_104580, exon 9 of 9)	-315000.0	NM_028138	72167.0	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	3.27873954178385	3.55371797069458	3.61189240290675	3.51063141027847	3.35401014468869	3.51353521246472	3.3871874464105	3.4543021643329	-0.242637275343672	0.631938770595849	0.843636666383789
Merged-chr11-51911708-4	chr11	51911625	51911825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-54095.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	5.75659973209468	5.48699458213889	5.80354140395144	5.8330631281822	5.59989444573928	5.42530445659637	5.52718374586758	5.55113930324656	-0.338143922509898	0.206248998469017	0.510210725476936
Merged-chr1-40415686-3	chr1	40415595	40415795	+	663.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13875.0	NM_001294171	17082.0	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	2.82806689125189	2.73649520932584	2.82841385020437	2.93600802940856	2.63813445807843	2.80553307406227	2.69340621930526	2.88589985425905	-0.401422078953939	0.526473211138963	0.783742270408093
Merged-chr5-43234601-6	chr5	43234551	43234751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175937, exon 1 of 11)	exon (NM_175937, exon 1 of 11)	703.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	4.83273113379067	4.97348236032274	5.38109120082879	4.84106058380512	4.91111358567208	5.08820753015392	5.12690403914999	5.42837790342027	0.249647704978205	0.459647690968736	0.74208997902975
Merged-chr7-12961919-4	chr7	12961832	12962032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-3906.0	NM_001362140	243834.0	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	8.01020031029582	8.25890871944142	8.13656696289367	8.30357379786238	8.24005210672288	8.24331387167886	8.19415378848428	8.17424980690786	0.0308942073265847	0.84490563500899	0.941218991545198
Merged-chr14-14120969-4	chr14	14120886	14121086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025550)	promoter-TSS (NM_025550)	-82.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	7.35180252155508	7.43889586079768	7.27753709201366	7.58441021643033	7.70541847049418	7.55127245499163	7.83116950586203	7.5415864382743	0.312311803759989	0.0869348011547001	0.321584669545286
Merged-chr11-113777969-3	chr11	113777868	113778068	+	771.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-26153.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	3.41131876766662	3.29605974320735	3.28143272716619	3.31917842908632	3.65294655449689	3.52961079644704	3.85964437573306	4.14686838323357	1.54758685817153	0.00227090315910804	0.0257964596173238
Merged-chr5-102032942-4	chr5	102032844	102033044	+	900.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	36977.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	4.82375672613815	4.63574793057169	5.06616524049632	4.8593043271742	4.12435603202952	4.26327930974525	4.37199351860546	4.47893852117219	-1.23232359284613	0.00109390841774627	0.0144432029802934
Merged-chr11-17166834-4	chr11	17166734	17166934	+	827.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 1 of 5)	intron (NM_024459, intron 1 of 5)	7536.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	3.76890480108996	3.77168079701915	3.9714803344162	4.00619557952297	3.94155442880303	3.9949751600957	3.7548133611615	4.01490910271874	0.104260927308189	0.812777929249451	0.927656717651261
Merged-chr12-85759016-3	chr12	85758925	85759125	+	803.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145447, intron 1 of 9)	intron (NM_145447, intron 1 of 9)	12486.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	3.38225739243029	3.35545247178192	3.58704292463233	3.40607333009047	3.25419893255902	3.3162286838248	3.13002672157955	3.43503367449407	-0.526047032990369	0.320590313689489	0.632430335149585
Merged-chr15-25269844-4	chr15	25269750	25269950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143914.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	8.54247912737776	8.87168997488067	8.75643411578194	8.53776858084128	8.87197925164139	9.02286267724037	8.85046938462385	8.72569389591904	0.235844677315958	0.143094002801684	0.421263555717193
Merged-chr3-20295123-4	chr3	20295026	20295226	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19393.0	NM_029706	76703.0	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	5.90689282673371	4.80449814731651	5.75552406934159	6.08481214482967	5.44454956410341	5.49589598363341	5.44344009230745	5.5511823899939	-0.415845573563663	0.244535793558298	0.555758908320383
Merged-chr6-146172444-4	chr6	146172318	146172518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 50 of 56)	intron (NM_019923, intron 50 of 56)	238296.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	5.05209274795974	5.35596448520995	5.61997117703469	6.16132258710318	5.55146686888886	5.27349479643923	5.45828337764677	5.75993811082729	-0.189825994919617	0.592481724721976	0.822191283909712
Merged-chr14-70153641-6	chr14	70153525	70153725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001004155)	TTS (NM_001004155)	166.0	NM_146055	219158.0	Mm.218284	NM_146055	ENSMUSG00000033712	Ccar2	2610301G19Rik|Dbc1|mKIAA1967	cell cycle activator and apoptosis regulator 2	protein-coding	5.61814235313728	4.99498451539332	5.68814103319447	5.33341706596886	4.78532080395623	5.34583352336975	5.20878420027174	5.49098665872276	-0.368957904723835	0.283673918580416	0.595728620128502
Merged-chr6-137410680-4	chr6	137410568	137410768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164403)	promoter-TSS (NM_001164403)	-53.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	7.21028245035177	7.29348995288343	6.98456971491356	7.21965623195528	7.30202612481269	7.09498094667672	7.41261488402655	6.8119241246086	-0.00670828756292872	0.97445642278743	0.990913996665327
Merged-chr6-87042753-4	chr6	87042662	87042862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013528)	promoter-TSS (NM_013528)	-84.0	NM_013528	14583.0	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	8.18153948841015	8.35970870485601	8.30434341765612	8.19821300298364	8.04168682184283	8.14921038410935	8.40567022671192	8.25402619094879	-0.0575504717385684	0.725474346121809	0.890921883682774
Merged-chr1-66818274-2	chr1	66818149	66818349	+	915.166626	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001122738)	promoter-TSS (NM_001122738)	-654.0	NM_001122738	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	4.54095259250115	4.9146601335684	4.79216677408827	4.65272619671304	5.28770453797162	4.72081676463652	4.80658001707332	5.0300115748456	0.533262213395523	0.127011529663078	0.396437588841899
Merged-chr2-165287006-3	chr2	165286921	165287121	+	786.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252575, intron 1 of 9)	intron (NM_001252575, intron 1 of 9)	766.0	NM_001252574	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	3.29795586153324	3.49043564463291	3.41989600523244	3.48142731110861	3.4031239151868	3.53480302563826	3.40713854277213	3.85521842565464	0.43073971740796	0.400444618219507	0.698249613685268
Merged-chr12-11178973-3	chr12	11178934	11179134	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25468.0	NR_131084	77442.0	Mm.159922	NR_131083	ENSMUSG00000112041	9530020I12Rik	-	RIKEN cDNA 9530020I12 gene	ncRNA	4.62876468143195	4.5772084370815	4.12041838475246	4.72578104054516	3.57414560213269	3.64975102526613	4.10206327958781	3.66549404705917	-2.11574916066939	1.34341362753699e-05	0.000359754847985161
Merged-chr9-120766478-3	chr9	120766384	120766584	+	633.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	148766.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	3.81055953571793	3.90219490894486	4.13242788958359	3.33302348666544	3.03635805195465	3.13974346280788	3.16725065421138	3.66369531067476	-1.86962879915381	0.00288896841914119	0.0310609219531635
Merged-chr2-128124681-4	chr2	128124547	128124747	+	916.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028765)	TTS (NM_028765)	-1391.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	4.51644568325614	5.25484403633535	5.00072954888699	4.22992986079003	4.80137608082253	4.86133389018855	4.58307574471934	4.51429595589503	-0.22602387638127	0.592487356180627	0.822191283909712
Merged-chr4-127148033-4	chr4	127147954	127148154	+	954.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21150.0	NM_198618	242667.0	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	DLG associated protein 3	protein-coding	4.87609130484351	4.99884896690424	4.53501499992568	4.11659918865339	4.72366660167326	4.75346866659292	4.71345557812004	4.65634198698365	0.100552363924801	0.802756122334677	0.923936032101707
Merged-chr12-35889982-2	chr12	35889887	35890087	+	626.75	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-35634.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	3.67918341531696	3.64106066765518	3.29662793188132	3.80474315455853	3.76027519938908	3.90713363707824	4.0012650809864	4.09958145007241	0.904101508430312	0.0677406895603625	0.277812516507301
Merged-chr8-69206590-4	chr8	69206442	69206642	+	890.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2504.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	4.22315385882527	4.40178474478553	4.26840527902553	3.98194481645858	3.96807036499929	4.39628900068094	4.44914560415073	4.07755959880644	0.0341082985890889	0.935925649628934	0.976749923977155
Merged-chr14-73239521-2	chr14	73239421	73239621	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175116, exon 1 of 1)	exon (NM_175116, exon 1 of 1)	1630.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	3.36604117085261	3.19343030864821	3.2552078619015	3.1972872126213	3.22062249251085	3.17800205121197	3.1844497701222	3.51483624276489	0.11430836071879	0.831857086645999	0.935652057925475
Merged-chr15-60835154-4	chr15	60835083	60835283	+	812.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-10103.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	3.75376066530615	3.73107777666031	3.21902160513995	3.6970056350241	3.76169010833955	3.59900769301085	3.73838938570299	3.75208448498981	0.28482861813816	0.570894508109663	0.810266997522238
Merged-chr17-80776040-4	chr17	80775932	80776132	+	798.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48007.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	3.76902042100172	3.86751236616305	3.97983586579432	4.07836960133937	4.03987639388048	3.83027905807602	4.26046923053178	4.07089082327062	0.322305332389854	0.461231243020553	0.743056442024124
Merged-chr16-15863397-4	chr16	15863310	15863510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029354)	promoter-TSS (NM_029354)	-41.0	NM_001359003	72083.0	Mm.22351	NM_029354	ENSMUSG00000022671	Mzt2	2410018G20Rik|2610001E06Rik|Fam128|Fam128b	mitotic spindle organizing protein 2	protein-coding	7.15419991254142	7.3668537918545	6.7309250599023	7.07637245708164	7.58765307357513	7.34424412529509	7.51361281574039	7.21827392470743	0.437800366157608	0.0377803162909332	0.194345966125051
Merged-chr2-57117757-4	chr2	57117649	57117849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139509, intron 1 of 7)	intron (NM_001139509, intron 1 of 7)	-2711.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	5.15975775652091	5.39807989527283	5.22771971071514	5.26147059482644	5.35257161030218	5.33773551189439	5.86601153719111	5.28782482500603	0.382135493840821	0.205414580845718	0.508981750286309
Merged-chr7-51879362-3	chr7	51879249	51879449	+	957.1904910000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008087, exon 1 of 8)	5' UTR (NM_008087, exon 1 of 8)	382.0	NM_001330607	14453.0	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	3.44635576401381	3.33982720064951	3.59318282348121	3.56891993406461	4.41947038646014	4.38520937221155	4.75268495306563	4.83072103426277	2.93842641183037	7.29163623040399e-09	3.98320318682982e-07
Merged-chr8-121580201-4	chr8	121580102	121580302	+	867.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-1396.0	NM_133765	76454.0	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	3.62614754975416	3.73146475232136	3.62661681824451	3.64800671252751	4.06151670447356	3.80144431961092	4.04310591641247	3.68095805178818	0.742074151762035	0.102852722891857	0.35216269069915
Merged-chr4-156200876-4	chr4	156200792	156200992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015783)	promoter-TSS (NM_015783)	-74.0	NM_015783	100038882.0	Mm.4950	NM_015783	ENSMUSG00000035692	Isg15	G1p2|IGI15|IP17|Irfp|UCRP	ISG15 ubiquitin-like modifier	protein-coding	6.56298630102387	7.01759062626285	6.26226402121602	6.32055807705562	7.28783540643339	7.25633622100574	6.57968581298214	6.70218835318751	0.598836866830127	0.0304354912697174	0.168873695979874
Merged-chr9-66975423-4	chr9	66975324	66975524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030717)	promoter-TSS (NM_030717)	60.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	6.09094037713794	6.19551031175561	6.17409485761761	5.93097359410877	6.5383592489346	6.26813071261272	6.20040884392743	6.08766627573185	0.312753615151051	0.194066058775942	0.494413830044481
Merged-chr18-31804107-4	chr18	31804025	31804225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170966)	promoter-TSS (NM_001170966)	68.0	NM_001170966	74320.0	Mm.277705	NM_028866	ENSMUSG00000024400	Wdr33	1110001N06Rik|2310011G05Rik|2810021O11Rik|8430413N20Rik|WDC146	WD repeat domain 33	protein-coding	6.58498895126247	6.33188921518306	6.66079957919416	6.50112099011597	6.28942674632274	6.45041452574502	6.61230019370096	6.30767523837314	-0.153636275109166	0.488185402771703	0.76118893988362
Merged-chr5-24038401-4	chr5	24038292	24038492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7702.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	6.52347621803307	6.41923585215869	7.09983448029493	6.53656053503292	6.54529283047856	6.65061994047844	6.1946272654286	6.60029634990132	-0.227881726280638	0.363330860888405	0.668503886726201
Merged-chr19-14650934-3	chr19	14650835	14651035	+	836.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie1b|DNA|hAT-Charlie	-52752.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	3.54269711902487	3.25842533874757	3.59426409325492	3.5742291609251	2.99160754244538	3.23001147661029	3.92143687984142	3.31455008760767	-0.279456441444227	0.645232864637149	0.850799912413769
Merged-chr16-57231583-4	chr16	57231475	57231675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358433)	promoter-TSS (NM_001358433)	-109.0	NM_001358433	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	9.14358696075307	9.26030439819693	9.15450465361796	8.94426718923492	9.04816426711775	9.29411720751786	9.06600282336601	8.89731397328741	-0.0550418027213493	0.728714471490934	0.892191512842823
Merged-chr11-16977737-3	chr11	16977635	16977835	+	831.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 9 of 9)	ORR1G|LTR|ERVL-MaLR	26325.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	3.39123902443321	3.92987048671427	3.60772924368037	3.98821472636284	3.24404862055478	3.17258500001263	3.05231260051674	3.20125077370233	-2.14822846782528	0.000331194149259189	0.00550410187955168
Merged-chr9-114805338-4	chr9	114805216	114805416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 1 of 3)	intron (NM_027294, intron 1 of 3)	-23323.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	7.12730526216719	7.2342161220031	7.20569447365513	7.38914835403641	6.89740912120256	7.12243267554325	6.97391336222547	6.28286281252435	-0.54100823937664	0.0190602251274561	0.12389842596778
Merged-chr8-22411355-4	chr8	22411256	22411456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020560)	promoter-TSS (NM_020560)	16.0	NM_020560	57312.0	Mm.289402	NM_020560	ENSMUSG00000031533	Mrps31	1500002D03Rik|AA960481|Imogen38|Imogen44	mitochondrial ribosomal protein S31	protein-coding	5.67781208588834	5.75477799246297	5.48057245962942	5.83269778432788	5.93598518940282	5.88012273957408	5.95006424897421	5.7994879980401	0.303815140117232	0.232302515179181	0.541937685685126
Merged-chr7-130812589-4	chr7	130812522	130812722	+	920.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081038, intron 10 of 15)	intron (NM_001081038, intron 10 of 15)	38553.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	4.4485861309641	4.80342632284335	4.49502152778279	4.39777624276444	5.24371757887982	4.94884137578958	4.47481453425835	4.62040199346228	0.686581932654056	0.0763441913050324	0.298445913494118
Merged-chr4-99929890-4	chr4	99929775	99929975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028132, intron 1 of 10)	CpG	424.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	5.56195164926817	5.44951119597802	5.98028895688093	5.53615447913168	5.6671653721737	5.56396742244865	5.58842869864451	5.7848030158621	0.0287716960729098	0.917199777863782	0.969459238985449
Merged-chr2-147178323-3	chr2	147178274	147178474	+	683.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077632, intron 2 of 2)	intron (NM_001077632, intron 2 of 2)	-5709.0	NR_030769	100313531.0	Mm.405189	NR_030769	ENSMUSG00000086509	Nkx2-2os	Gm14112|Nkx2-2as|Nkx2.2AS	NK2 homeobox 2, opposite strand	ncRNA	3.59863845106008	3.74414273558802	3.65017136493107	3.10605950340248	3.24364176670435	3.42490714760874	3.68273619000152	3.59703520517256	-0.151018001989452	0.786362407363584	0.916920414680109
Merged-chr11-90558832-3	chr11	90558712	90558912	+	830.1777950000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011505, intron 12 of 17)	intron (NM_011505, intron 12 of 17)	79296.0	NM_011505	20913.0	Mm.207203	NM_011505	ENSMUSG00000020546	Stxbp4	6030470M02Rik|Synip	syntaxin binding protein 4	protein-coding	3.52948175607219	3.70283407860577	3.68553961818899	3.8394952006478	3.32220287971852	3.52884933995722	3.34187889525639	3.52804682132177	-0.91435209428457	0.0698553229285906	0.282883609287498
Merged-chr15-98957386-4	chr15	98957292	98957492	+	913.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3891.0	NM_011653	22142.0	Mm.405359	NM_011653	ENSMUSG00000072235	Tuba1a	Tuba-1|Tuba1	tubulin, alpha 1A	protein-coding	4.52138185191823	4.2551157155028	4.63159434684342	4.42270993375263	4.34813765113786	4.08019169599355	4.29631610336314	4.39935024683917	-0.399257856843167	0.304443605064938	0.617029527125211
Merged-chr12-102367311-4	chr12	102367264	102367464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	72449.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	7.19144068315491	6.83482112418866	7.87726163542042	7.92071798135552	6.95059408251367	6.97896102987521	7.1108266957912	6.88381111265875	-0.756252770730777	0.00493865997262736	0.0471281509842664
Merged-chr14-19904180-4	chr14	19904097	19904297	+	922.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285910, intron 1 of 2)	intron (NM_001285910, intron 1 of 2)	65272.0	NR_105025	52512.0	Mm.483998	NR_105025	ENSMUSG00000114350	D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	5.3991051812342	4.90666613967034	5.37432949983019	5.85880008535959	4.39440351481214	4.37801569881139	4.63948778323129	5.01224843199194	-1.59537078659388	5.43197878448513e-05	0.00121624038345664
Merged-chr6-115321546-4	chr6	115321431	115321631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-39420.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	5.71149448731523	5.03371498938647	5.33811150716335	6.05739833696618	5.30594179216556	5.16541618553416	5.51109683402135	5.58718750107018	-0.35976172976971	0.302174584542897	0.614475466479413
Merged-chr15-25370417-4	chr15	25370314	25370514	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	43350.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	5.41949657133126	5.08863467885006	5.7371715299937	5.51360297961729	5.17198429322094	4.97217268797205	5.18410038313396	5.49711551284716	-0.429923024076035	0.176300650306094	0.471307205534908
Merged-chr17-23998550-4	chr17	23998444	23998644	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133731)	promoter-TSS (NM_133731)	-444.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	5.33371467565768	5.41685928727233	5.23795865698217	5.33661060732088	5.81829874265638	5.73464824827288	5.10873852888867	5.65721304030385	0.485391625153257	0.103979782900072	0.354394606734545
Merged-chr6-125351083-2	chr6	125350986	125351186	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	1363.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	3.41795598940599	3.28853101872582	3.35838210245633	2.56464595467407	3.46954476793382	3.90163541464505	3.5155915969384	3.72844999075565	1.52185986659376	0.0225862973539636	0.138804347597384
Merged-chr3-123333303-4	chr3	123333196	123333396	+	980.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027135, intron 10 of 22)	intron (NM_027135, intron 10 of 22)	52694.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	5.45643953778288	5.03161294887308	5.61798648687482	5.95875372141766	6.62721963817689	6.2307060734273	6.72767382733342	6.98246767094283	1.66106563331719	1.73539715344715e-07	7.08685220798706e-06
Merged-chr11-4704632-3	chr11	4704535	4704735	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356391)	promoter-TSS (NM_001356391)	-21.0	NM_001356391	67178.0	Mm.271056	NM_026015	ENSMUSG00000009076	Zmat5	2610510L01Rik|D11Bwg0572e|D11Bwg1548e	zinc finger, matrin type 5	protein-coding	5.94942385277486	5.68886598961261	5.47236777113292	5.7208178236711	6.1422280910422	6.08118668826472	6.4784735004039	5.8779929992404	0.70571167900049	0.00799253730795722	0.0671480939849962
Merged-chr7-16928487-4	chr7	16928383	16928583	+	904.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4451.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	4.33749330213031	4.31923155804185	4.23976482778702	3.81497651862854	4.80226530643235	4.64907566573857	4.88003425367182	4.87066425062971	1.44589858660749	0.000162817246785385	0.00306105885074932
Merged-chr7-115084887-4	chr7	115084774	115084974	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	133600.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	5.74891494114951	5.64336001351434	5.92491822000541	6.04254915476975	5.37490829677271	5.1496972019559	5.51856237814323	5.42727721374621	-0.821418214954611	0.00333098487309993	0.0346581161061804
Merged-chr4-40174459-4	chr4	40174368	40174568	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 4 of 20)	intron (NM_007386, intron 4 of 20)	31203.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	5.71980867288031	5.86708910712013	6.19669804095036	6.08068416060571	4.95518325287583	5.13886486984008	5.30175385116966	5.44934862135384	-1.32230134718558	6.44629462941153e-06	0.000186217859345326
Merged-chr13-93243281-4	chr13	93243190	93243390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-50873.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	6.82251073473145	7.08345383254899	6.83768253130661	7.19386430437292	6.73354836142001	6.83623058685512	6.81675071407723	6.81886718910355	-0.294587256387789	0.148620909609688	0.430447905481282
Merged-chr13-8867558-4	chr13	8867464	8867664	+	776.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039388, intron 1 of 13)	URR1B|DNA|hAT-Charlie	3480.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	3.47780566504009	3.58626531324713	3.77577894620549	3.7059646739182	4.12086097112708	4.18634656467878	4.00003485120581	3.82584040810881	1.11770164093418	0.0139976886027239	0.0999840920274248
Merged-chr5-24046666-5	chr5	24046478	24046678	+	854.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15888.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	3.82172417188215	3.44895491401035	3.86585180439618	3.72255175459019	3.63662930164809	3.57437924623706	3.38889144291019	3.51692821398849	-0.595089463193381	0.233031691953101	0.542611378295208
Merged-chr2-102914338-3	chr2	102914279	102914479	+	862.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12714.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.41079037489551	3.35651355749073	3.75287966413916	3.21511207509215	3.83461687786782	3.6543428276839	4.04298727732967	3.93665884984122	1.37152692226077	0.0058448871234823	0.0532673881748564
Merged-chr3-132171753-4	chr3	132171647	132171847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	MER121|DNA|TcMar?	86455.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	6.99506793348167	6.79194226067429	7.22031060661755	7.15490742672476	6.74195945535722	6.9004410069266	6.70404367007261	6.68752425437659	-0.413329860483894	0.0443105100751044	0.21472794113475
Merged-chr12-102365270-4	chr12	102365167	102365367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	74546.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	7.45612105645414	7.40409147458266	7.43858644050937	7.4661570076918	7.44617264628896	7.03743217072756	7.26196502936319	7.42393009814789	-0.177141321988587	0.337022398601338	0.646885264386813
Merged-chr15-59481919-3	chr15	59481817	59482017	+	965.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	107719.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	4.61747509636088	4.65004002075107	4.30474479094876	4.09336648470097	3.45908527169804	3.70556346764229	3.5695917023578	3.64656937029492	-2.4794239269444	1.28560714222642e-06	4.39520801040032e-05
Merged-chr13-113352755-3	chr13	113352655	113352855	+	829.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143096.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	3.53790771958414	3.5706644038905	3.81018892760433	3.7964886978373	3.65379482818566	4.07168129251094	3.79396660665677	3.65196495529009	0.317518272305101	0.505899283217012	0.771707279587324
Merged-chr8-72420977-4	chr8	72420872	72421072	+	939.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122832, intron 1 of 15)	CpG	502.0	NM_001122832	13859.0	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding	4.89078064132304	4.94918473492787	4.95771792092476	4.443572342481	4.8379121958446	4.58198366560135	4.72555128287775	4.70628007492433	-0.184284419661859	0.611792476507174	0.832569290540731
Merged-chr12-55569906-4	chr12	55569809	55570009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4704.0	NM_001277340	79459.0	Mm.392781	NM_001277340	ENSMUSG00000063129	Aldoart2	4933425L11Rik|Aldo1-ps1|Aldoa-ps1	aldolase 1 A, retrogene 2	protein-coding	5.07676006865588	5.1144385072885	5.21167604777825	5.53933072592126	5.20825070691678	5.25358834568005	5.3064245908937	5.35779029875364	0.013460563551142	0.965079804818774	0.987683902619634
Merged-chr3-26991223-4	chr3	26991114	26991314	+	967.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	162640.0	NM_007900	13605.0	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536	ect2 oncogene	protein-coding	4.95597057797412	5.38103895602189	5.85667679544331	5.88682730803452	5.71648154601908	5.30138260117899	5.92908240266412	5.69224227072053	0.159465958849562	0.640002710141638	0.847874046591045
Merged-chr2-145827321-6	chr2	145827216	145827416	+	781.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	B1F|SINE|Alu	41200.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	3.96012818247131	3.84026803390828	3.7130325630819	3.85406601245234	3.70765180116007	3.77445210282334	3.75151025036149	3.95830268601278	-0.138396696405047	0.75719676956539	0.90457703435425
Merged-chr3-96601530-3	chr3	96601436	96601636	+	858.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163170, intron 1 of 5)	intron (NM_001163170, intron 1 of 5)	403.0	NM_001163170	280411.0	Mm.482147	NM_001163170	ENSMUSG00000049288	Lix1l	D130027M04Rik	Lix1-like	protein-coding	4.0672843966442	3.77826109865508	3.93873606357106	3.71742342611906	3.91641324333095	3.62857990493899	3.50012407956477	3.74074363893982	-0.468384258310125	0.330926142700305	0.642104407905452
Merged-chr4-66830581-5	chr4	66830374	66830574	+	832.34668	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021297, intron 1 of 2)	Lx2|LINE|L1	2923.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	2.80538600873645	2.75582200551398	2.80576297010144	2.53467481552328	2.63103965372805	2.65017971378123	2.53882296031804	2.80423844732622	-0.316968859414417	0.633153836478953	0.844477990644694
Merged-chr9-45093023-3	chr9	45092942	45093142	+	774.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005421, intron 5 of 10)	intron (NM_001005421, intron 5 of 10)	13859.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	3.22904894057031	3.09116655292822	3.02016015307643	3.28049519774344	2.47402030138936	2.7315738077135	2.61836549916753	2.62388986890658	-3.17357563559946	9.32058224842535e-05	0.00191466009772199
Merged-chr5-32133184-4	chr5	32133094	32133294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3278.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	5.79773541594189	5.34136927966077	5.6802036866091	5.31936687259845	5.49131153130104	5.85413564252838	5.62641010924825	5.77180653704759	0.257138570405058	0.369681044227756	0.673878074836651
Merged-chr15-36716105-8	chr15	36716008	36716208	+	989.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74824.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	3.97084327384683	4.33005862847966	3.78507137715522	3.81789449484248	4.55975764372273	4.8463505322011	4.65361131216487	4.56773997576554	1.59434794613752	9.1734699365482e-05	0.00188934727029388
Merged-chr12-36364523-4	chr12	36364425	36364625	+	985.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16925.0	NM_001289504	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	5.06459906461467	4.868693678097	5.06544987074057	5.20279917572701	5.23836748978073	4.7161158972571	5.43830403021311	5.15918689530065	0.199002323527433	0.548631592167624	0.79752982944755
Merged-chr6-129397005-4	chr6	129396892	129397092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204239)	promoter-TSS (NM_001204239)	-305.0	NM_001204253	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	6.72629646460973	6.79555941732502	7.13883266313641	6.87859649466306	6.62224736958317	6.73104148788458	6.48599483272499	6.75185573237026	-0.344316440256491	0.101498610541439	0.349553396541952
Merged-chr6-124311696-3	chr6	124311588	124311788	+	848.788879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_053094, exon 5 of 17)	exon (NM_053094, exon 5 of 17)	7037.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	3.42971493833762	3.34215216784251	3.32343663186363	3.50494596686667	3.13203658078812	3.43693216409889	2.85551063226142	3.20539064917068	-0.878770070194656	0.133782609854497	0.407258249372734
Merged-chr3-87525587-4	chr3	87525455	87525655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012051)	promoter-TSS (NM_012051)	-23.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	6.66349869510563	6.79500243906806	6.33806243308393	6.66893696453701	6.70969988655441	6.51616900857886	6.8385112165393	6.76160957095282	0.115390639034761	0.592925557396164	0.822423445862576
Merged-chr9-44231150-4	chr9	44231031	44231231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 1 of 15)	intron (NM_007619, intron 1 of 15)	2915.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	5.86139549489104	6.21437839096341	5.4595228637908	5.33346508771699	5.9957301357119	6.20806697850789	5.66112435278409	5.81135622121647	0.284892845799168	0.367366988702616	0.671808824830139
Merged-chr4-155568273-4	chr4	155568161	155568361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355599, intron 1 of 10)	B1_Mur1|SINE|Alu	4446.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	6.16279667539502	5.89051582294236	6.22305885646159	6.10389531251057	6.15669628931123	6.62551384125884	6.26556436750101	6.27507231866704	0.359459064773116	0.134754384681081	0.408602721099257
Merged-chr2-68434716-4	chr2	68434613	68434813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	37268.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	6.03523033366625	6.38904551261744	6.12391594311127	6.51665806359719	6.51950127199492	6.04624445843094	6.57570630181303	5.98585454160835	0.034804754683425	0.896264529475446	0.961046277451873
Merged-chr15-9455394-4	chr15	9455304	9455504	+	824.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029341, intron 1 of 4)	intron (NM_029341, intron 1 of 4)	19376.0	NM_029341	75568.0	Mm.82143	NM_029341	ENSMUSG00000039676	Capsl	1700028N11Rik|AW125205	calcyphosine-like	protein-coding	3.45709610265194	3.28837633456311	3.57401917849639	3.59031646083969	3.96361975986458	3.5107465974364	3.56003977560706	4.03376179343055	0.932541546224021	0.068092231694168	0.278573069579187
Merged-chr14-21941749-4	chr14	21941651	21941851	+	885.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	47850.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	4.28169555070161	4.50046330039861	4.14523956923381	4.40756010847869	4.38136466670586	3.8763792971268	4.07912021673118	4.27968288691145	-0.409705814236803	0.328872169236866	0.640144325858488
Merged-chr6-108696055-4	chr6	108695959	108696159	+	958.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35125.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	4.60063897758228	5.05258162169313	4.80617654428026	5.41812945118181	4.9875777226954	4.54311550760406	4.82047356029806	4.72501846596704	-0.481145508679083	0.208535409367701	0.512901300380109
Merged-chr2-117019340-4	chr2	117019222	117019422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101749.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	6.55539385339713	6.81744535173785	6.53991083692735	6.89821409354128	6.77564967952151	6.51888232392821	6.80215819608479	6.44866906902266	-0.106073135786232	0.633756838182083	0.844854814866136
Merged-chr11-80087026-4	chr11	80086950	80087150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2350.0	NM_001029856	237877.0	Mm.89551	NM_001029856	ENSMUSG00000017550	Atad5	C130052G03Rik|FRAG1|Gm17	ATPase family, AAA domain containing 5	protein-coding	6.25679987466448	6.48729867092891	6.07199895850856	6.03079593941646	6.52397871850473	6.41465315146435	6.33557879335488	6.36363190652521	0.299344124027259	0.200533113044978	0.502543620512921
Merged-chr2-19388905-4	chr2	19388805	19389005	+	920.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029619, intron 3 of 4)	intron (NM_029619, intron 3 of 4)	17269.0	NM_029619	76467.0	Mm.27166	NM_029619	ENSMUSG00000023094	Msrb2	2310050L06Rik|Mrsb|Msrb|Pilb	methionine sulfoxide reductase B2	protein-coding	5.1356965870204	5.26014259652386	4.92720264508914	5.58016217900495	4.86797306311014	4.71937169650389	5.58396714751397	4.76308482779185	-0.419388841138416	0.271540164256725	0.583247666197459
Merged-chr16-75872415-4	chr16	75872312	75872512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 6 of 7)	intron (NM_023380, intron 6 of 7)	36854.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	7.01122011475515	7.28032514538042	6.31420287485409	5.90639257639006	7.69093781365888	7.82339179333627	7.29401061756223	6.6489336698935	0.940166961920543	0.0767178819980841	0.299384183844523
Merged-chr11-120903464-4	chr11	120903375	120903575	+	980.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 5 of 18)	intron (NM_027745, intron 5 of 18)	29397.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	5.08036570073757	4.48894424057162	4.5237869533675	4.02636504710659	4.17768247292599	4.44308507265869	4.24624481755576	3.9417149867912	-0.853422982604413	0.066183763966384	0.274075913356727
Merged-chr4-6386857-1	chr4	6386757	6386957	+	609.0	f0_balb.idr	intron (NM_001098227, intron 6 of 8)	intron (NM_001098227, intron 6 of 8)	21177.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	3.41879620530082	3.41523225138459	3.41929406818484	3.27991799195553	3.08642714815777	3.30761000626759	2.9905087177737	3.19418433186027	-0.895634200514815	0.107278839737435	0.361381946695261
Merged-chr18-67500743-3	chr18	67500647	67500847	+	701.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176832, intron 9 of 13)	intron (NM_176832, intron 9 of 13)	35898.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	3.55868000754845	3.59091966765728	3.70453155361639	3.8487715842317	3.13833475263888	3.38643650655458	3.05851944095564	3.33379322700817	-1.65937682599407	0.00281097329963405	0.0303694501041283
Merged-chr17-28709204-4	chr17	28709098	28709298	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	16630.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	4.76129642493336	4.73640267012635	4.20159342792355	4.52452893378673	4.30640891253272	4.10931566367148	4.45186998144027	4.2482998426521	-0.668191298140493	0.0944738281514649	0.336261256825339
Merged-chr7-143600156-4	chr7	143600060	143600260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013742)	promoter-TSS (NM_013742)	-70.0	NM_013742	27267.0	Mm.125659	NM_013742	ENSMUSG00000010755	Cars	CA3	cysteinyl-tRNA synthetase	protein-coding	8.30058495795908	8.48912479097519	8.06180400754111	8.18446014386564	8.32832497888655	8.4852627609819	8.40046180271217	8.36724368427187	0.160509661134287	0.330528050954641	0.641871774561785
Merged-chr10-82629808-4	chr10	82629722	82629922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011561)	promoter-TSS (NM_011561)	-16.0	NM_001358517	21665.0	Mm.284252	NM_011561	ENSMUSG00000034674	Tdg	E130317C12Rik|JZA-3|Jza1	thymine DNA glycosylase	protein-coding	8.09970645781245	8.15151999553753	7.82092061866329	7.64147178517052	8.3876394380645	8.56523563180499	8.55026136300813	8.21225022917918	0.635417888426385	0.000764191115330067	0.0108528250993773
Merged-chr11-98786684-4	chr11	98786584	98786784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8832.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	7.15418619752974	6.77940198811874	6.49359972059115	6.47052508800615	7.05331218168843	7.12229890236002	6.89814658511785	6.87616087748445	0.34878782830333	0.13460926337054	0.408412308501775
Merged-chr15-38635233-1	chr15	38635133	38635333	+	604.0	f0_balb.idr	Intergenic	Intergenic	-26671.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	3.01391684498878	2.84940039651797	2.95926132100384	3.06673480087895	2.42588906655282	2.74737326885915	2.63456225441459	2.77682654822907	-1.68879732421963	0.0165887589520835	0.11265963837753
Merged-chr7-102025447-4	chr7	102025343	102025543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 6 of 8)	intron (NM_029211, intron 6 of 8)	-7288.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	8.54676529941044	8.71514484640397	8.75747726813042	8.40061396564737	8.53749988662407	8.62198213647361	8.46045636593073	8.26754731482195	-0.16240052686492	0.334390172228846	0.644993714949788
Merged-chr10-8122138-3	chr10	8122044	8122244	+	998.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-166021.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	4.70426271460014	4.6213692400206	5.02278891478333	4.95128370728016	4.32729739770069	4.30417217286785	4.31043108059667	4.17307361969048	-1.26514184766712	0.000800265291705574	0.0112484366505354
Merged-chr13-20220593-4	chr13	20220489	20220689	+	644.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 4 of 21)	intron (NM_080288, intron 4 of 21)	130082.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.83743648960528	3.75174602693218	4.0980168603889	3.92973124284837	4.44506904748756	4.27032274515053	4.33286400722036	4.09551712502836	0.995780680078435	0.0164586040113531	0.112084479039811
Merged-chr1-106321610-4	chr1	106321511	106321711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 4 of 16)	intron (NM_133821, intron 4 of 16)	149742.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	6.3397695308219	6.37283615419058	6.7034350671849	6.92686905548485	6.72335028193893	6.39914896579658	6.36420486042228	6.59430596054697	-0.129018056904604	0.600129644194069	0.826731739315186
Merged-chr10-93521550-1	chr10	93521450	93521650	+	769.0	f0_balb.idr	Intergenic	(CAAA)n|Simple_repeat|Simple_repeat	18483.0	NM_027908	71761.0	Mm.244518	NM_027908	ENSMUSG00000015890	Amdhd1	1300019J08Rik	amidohydrolase domain containing 1	protein-coding	3.04765870345268	2.9227871417528	3.14945040257972	3.21303603373871	2.34007665381107	2.56462481656807	2.45341409764866	2.53716532043664	-4.50420141447376	2.20588032249909e-05	0.000555402743102803
Merged-chr9-44228347-4	chr9	44228262	44228462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 1 of 15)	intron (NM_007619, intron 1 of 15)	5684.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	6.05818405615587	6.53887626502647	6.64705672739916	6.50796058427544	6.35872103930912	6.47052107435262	6.82726742420683	6.34586066193462	0.0766307810400689	0.75493361247187	0.903523774777845
Merged-chr19-38846630-3	chr19	38846532	38846732	+	808.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145952, intron 1 of 12)	intron (NM_145952, intron 1 of 12)	10053.0	NM_001362424	209478.0	Mm.391153	NM_145952	ENSMUSG00000048720	Tbc1d12	BC033574	TBC1D12: TBC1 domain family, member 12	protein-coding	4.06964557610323	4.25371800694148	4.80683739185154	4.77163310851136	3.82038206305415	3.57323050988476	4.00227293662408	3.73015155334839	-1.92411217975485	9.86751586010721e-05	0.0020083386199304
Merged-chr8-123342483-3	chr8	123342387	123342587	+	796.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172287, intron 1 of 14)	intron (NM_172287, intron 1 of 14)	9774.0	NM_172287	234857.0	Mm.150200	NM_172287	ENSMUSG00000010154	Spire2	BC026502|Spir-2|Spir2	spire type actin nucleation factor 2	protein-coding	3.24684240385682	3.24318290270858	3.36347799745816	3.27150240730262	3.38721061956433	3.08807339943343	3.64247028871159	3.4159578501742	0.420481839726353	0.433430591382737	0.722966654887911
Merged-chr13-45031469-4	chr13	45031379	45031579	+	775.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29383.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	4.51803876214567	4.54349367351555	4.39879959094471	4.24040141874986	4.57872561379535	4.07671950174626	4.20097571389119	4.35341428210394	-0.217371825706798	0.589479291436472	0.820464677958613
Merged-chr1-180778329-4	chr1	180778239	180778439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	35266.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	5.78289367133481	5.59670229330629	5.71175590982127	5.58669325184632	5.53304225004251	5.75696604544756	5.70717964737458	5.80293713744951	0.0546454680844872	0.833215822316829	0.936237948428556
Merged-chr5-3342411-4	chr5	3342308	3342508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1485.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	5.82898317411538	5.96558262512986	5.94743855544664	5.9140705062599	5.89935704728592	6.03049556959918	5.89462981821366	6.32632216072504	0.203058536781369	0.41204528365473	0.707284739828578
Merged-chr4-109165722-2	chr4	109165622	109165822	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346502, intron 2 of 23)	intron (NM_001346502, intron 2 of 23)	-27809.0	NM_001355190	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	2.69511730343655	2.62141940360467	2.62700478679093	2.63839532365703	3.03878106562531	2.86630595439451	2.87145571708766	2.93725687662561	1.3729905021044	0.025894365624426	0.152061302762232
Merged-chr3-89858347-4	chr3	89858248	89858448	+	969.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172530, exon 6 of 6)	3' UTR (NM_172530, exon 6 of 6)	26978.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	3.89774716799193	4.07864110834191	3.78872658047196	4.08685497253287	4.16825537609162	4.26228721540873	3.71681987886871	4.13491833962751	0.289381127742186	0.516183108517842	0.778006346996534
Merged-chr1-34485952-4	chr1	34485778	34485978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12534.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	5.32806994665477	5.64675387904621	5.96897569159321	5.34088671918815	5.8590846717175	5.82570211335767	5.54269180232039	5.76979694688606	0.288869535188602	0.321381117571169	0.633111551190032
Merged-chr3-39269574-3	chr3	39269460	39269660	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6C|LTR|ERVK	382620.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	3.9812220242873	3.66958668043909	3.8286490250907	2.76235165556897	6.57610253670661	6.15295140340885	6.34089613969186	6.05605689924407	6.99144942269432	2.70845753072515e-39	1.01465946620782e-35
Merged-chr10-127508447-3	chr10	127508345	127508545	+	797.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177707, exon 12 of 12)	exon (NM_177707, exon 12 of 12)	-6494.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	4.16588400864808	4.19117587839244	3.5448837664465	3.86836628883018	3.95866884808575	4.16088140931165	3.7156870995059	3.83822460825193	-0.102889528857671	0.830362977249314	0.934980877782147
Merged-chr6-17065101-3	chr6	17065030	17065230	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207176)	promoter-TSS (NM_207176)	-19.0	NM_207176	21753.0	Mm.436548	NM_011570	ENSMUSG00000029552	Tes	D6Ertd352e|TESS|Tes1|Tes2|testin2	testis derived transcript	protein-coding	3.98131625582643	4.35386912569553	3.98187142593406	4.61960799719596	4.22222662314585	3.81071168945582	4.01645056473801	4.17320375148565	-0.528985559172861	0.252734841896432	0.563984491060167
Merged-chr4-154939128-4	chr4	154938973	154939173	+	737.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10996.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	2.98333973426389	2.92874207364744	2.92274690489875	2.62110112119225	2.90173347520003	2.96837628650085	2.71333631143601	3.2493597164227	0.464042756405996	0.467874545281212	0.747186337721195
Merged-chr12-28727284-4	chr12	28727202	28727402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161410, intron 3 of 11)	intron (NM_001161410, intron 3 of 11)	23092.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	5.72495913641183	5.92285319434572	6.27036095658179	5.97609698560292	5.71429951956586	5.79483265676323	5.79702370169122	6.04362836984732	-0.23697403499003	0.363485238220407	0.668574361907056
Merged-chr15-83435462-3	chr15	83435368	83435568	+	886.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	-2618.0	NM_001159510	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	4.29440599041564	3.95867466500958	4.03248057459641	4.5664936528099	4.1985836446721	3.82243104893541	3.96642546140268	3.70083075015552	-0.790594186552814	0.0967432466069227	0.340703642776615
Merged-chr15-58823629-4	chr15	58823534	58823734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175212)	promoter-TSS (NM_175212)	-207.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	8.75075499515676	8.82823144659841	8.8972749698864	8.58482255758456	8.59992900286501	9.0186062835272	8.77719770774266	8.55352224250002	-0.0237669519293544	0.88973384354906	0.958662036977906
Merged-chr12-72664827-4	chr12	72664727	72664927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025522)	promoter-TSS (NM_025522)	1.0	NM_025522	66375.0	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	7.30436004678639	7.11058965750711	7.39618755741148	7.62541371104207	7.18115162267533	7.22965995629392	7.40692923138768	7.268836049616	-0.150504531079464	0.449388998033205	0.734605303680119
Merged-chr4-120815830-4	chr4	120815753	120815953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357192)	promoter-TSS (NM_001357192)	-140.0	NM_001357192	18046.0	Mm.318389	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	6.57058590654712	6.51107623781438	6.39914917569774	6.78802611182383	6.94884881672291	6.55794930595025	6.6458107587373	6.50087022684314	0.140853057172128	0.537966613392155	0.79126455418755
Merged-chr1-91428794-4	chr1	91428702	91428902	+	891.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011066, intron 17 of 22)	intron (NM_011066, intron 17 of 22)	-14764.0	NM_001360900	55927.0	Mm.280029	NM_019479	ENSMUSG00000067071	Hes6	AI326893|bHLHb41	hairy and enhancer of split 6	protein-coding	4.4015723479517	4.64742017927356	4.02009811476775	3.76913321854577	4.11705228243693	4.35406950099171	4.640022938041	4.4400869249075	0.354073931642199	0.441163606566086	0.728396857622944
Merged-chr6-15730408-3	chr6	15730327	15730527	+	694.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	9766.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	2.89041472876452	3.06778534619633	2.89071460905523	3.08928657734734	3.05457332675946	3.06298680162823	3.06509213771316	3.1312560310218	0.332778788242759	0.56366954531711	0.806428731514002
Merged-chr19-48049494-4	chr19	48049381	48049581	+	992.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111769.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	4.96377151036101	4.80610817832998	5.66525440210843	5.13346141021195	4.44652724101028	4.8661412356333	5.10772422717905	5.2784454931102	-0.429788141383657	0.274574279307607	0.586358723915758
Merged-chr12-35711782-6	chr12	35711651	35711851	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16633.0	NR_045050	71581.0	Mm.100110	NR_045050	ENSMUSG00000113985	9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	5.37759259280337	5.10108051799361	5.57602139139107	5.63245156380385	4.79327245826489	4.67585781116048	4.79249245809545	5.00441420749382	-1.19342930727927	0.000277680549773572	0.00476265634995978
Merged-chr3-40694651-4	chr3	40694543	40694743	+	887.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175515, intron 13 of 15)	LTR16A|LTR|ERVL	-14228.0	NM_178386	73333.0	Mm.78691	NM_178386	ENSMUSG00000069041	Slc25a31	1700034J06Rik|Ant4|Sfec	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	protein-coding	4.6884376544361	4.18725301175993	4.45278651549597	4.93500820984227	4.40911854332801	4.53874862418616	4.59348813493193	4.40601857025643	-0.282512130782963	0.481519100891818	0.756666940689708
Merged-chr6-72512656-4	chr6	72512596	72512796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31695.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	6.71843730525661	7.03573753254872	7.39253538262525	6.89696378723193	6.98707655027904	7.08392864621553	6.9378123908455	7.22263488218523	0.0424830043679639	0.846517681413688	0.941954402290774
Merged-chr12-91719279-4	chr12	91719188	91719388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 3 of 6)	MTD|LTR|ERVL-MaLR	67148.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	8.32828337508007	8.28227086677121	8.86661773229681	8.75879659118809	8.3928415990003	7.98490146120523	8.26268098706383	8.35160741051764	-0.413063388417202	0.0374892976842805	0.19335177820005
Merged-chr1-106815033-2	chr1	106814937	106815137	+	803.166626	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-18312.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	4.36916601555598	4.63910653543634	4.45354298177942	4.63197015381793	4.29053231456566	4.3102920235633	4.21503928800219	4.18160739127888	-0.679959563451618	0.0738533982994747	0.292760694896319
Merged-chr3-109340028-3	chr3	109339918	109340118	+	854.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020505)	promoter-TSS (NM_020505)	-665.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	3.70599818314764	3.18641227253448	3.09775123413464	3.46137496376451	3.61217846933374	3.52497226960187	3.28223535244789	3.29227783031964	0.180645350414028	0.748923026524607	0.901111877221528
Merged-chr3-121171690-4	chr3	121171580	121171780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025637)	promoter-TSS (NM_025637)	15.0	NM_028456	66568.0	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding	7.53777463736692	7.510005305264	8.06291766763705	7.5778874998856	7.47050280263777	7.35238183957828	7.53744679890349	7.2735772308003	-0.362353010801118	0.0728784717958502	0.290416344415901
Merged-chr3-57732056-4	chr3	57731944	57732144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4013.0	NM_011883	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	5.67980034149683	5.8536187375596	5.92333826353293	6.15576072962934	5.92110818473408	5.62659455561857	5.97791465404895	5.72910910169441	-0.168007065885821	0.52751020737182	0.784391359816541
Merged-chr11-24185135-4	chr11	24185041	24185241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104446.0	NM_001159290	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	6.18818536329437	6.48988824390045	6.26237019345838	6.35436202193323	5.50389404049797	5.83935265684043	5.81545667755299	5.68378339443017	-0.993119751097535	5.80698842068341e-05	0.00128604738268769
Merged-chr11-82845903-4	chr11	82845797	82845997	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164569, intron 1 of 7)	intron (NM_001164569, intron 1 of 7)	-16854.0	NM_026097	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	5.68122361408552	5.85022402559524	5.43113170015848	5.50220355221834	5.90361988244654	5.92981793904796	5.79588504650562	5.29798287040485	0.22794679267419	0.430709651405963	0.721216765724688
Merged-chr11-105474545-3	chr11	105474459	105474659	+	873.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17824.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	3.72868995632488	3.59110607805816	3.6751135356541	3.87699691693202	3.83242864070509	3.61448502808985	3.60512601543658	4.20568600860847	0.316644715211368	0.517330124804847	0.778803651723338
Merged-chr4-105253802-4	chr4	105253716	105253916	+	946.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96469.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.53540860340574	4.6863978699272	4.53611966861443	4.38741616484144	4.92281323685698	4.57826677881608	5.11790653290428	4.61702059374469	0.643224269963256	0.073918413363376	0.292936848994585
Merged-chr16-92439937-2	chr16	92439837	92440037	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	26232.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	3.94054658185374	3.61120557361712	3.6478522148962	3.88200562031256	3.59011046633229	3.64898542597548	3.73786423848557	3.75116071161505	-0.31291247910051	0.505020772597522	0.771199059216064
Merged-chr16-75874716-4	chr16	75874620	75874820	+	901.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 5 of 7)	intron (NM_023380, intron 5 of 7)	34546.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	4.4589766752615	4.8584962318405	5.45051218393411	5.0869581692408	4.51103503366943	4.59320749600694	4.81124542161481	4.50418810219704	-0.836157960722884	0.0325004710266525	0.176537071010125
Merged-chr10-25286470-3	chr10	25286383	25286583	+	900.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 2 of 7)	ID_B1|SINE|B4	12680.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	3.62909077758332	3.34773601864884	3.57566587255991	4.12522143006871	3.69019710584716	3.44788855752673	3.71524977219905	3.45888695053444	-0.406911491521733	0.458219806382837	0.741146353955598
Merged-chr6-16896643-4	chr6	16896552	16896752	+	965.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 1 of 6)	Lx3C|LINE|L1	1789.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	5.13277926013991	4.84160198292176	4.73312220233849	4.56236800952318	4.8763625166731	5.01846158469846	4.85760518318629	4.42203982231659	-0.0180156316810433	0.96094477021649	0.986031655491274
Merged-chr19-55233743-4	chr19	55233669	55233869	+	970.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 3 of 20)	intron (NM_001081076, intron 3 of 20)	7467.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	4.687405801444	4.69113356932983	4.68818068372257	4.49425188357416	4.49414432096101	4.4918428192336	4.38855097089749	4.26396249973127	-0.491176428075007	0.179443588842565	0.475667183458399
Merged-chr12-110447472-3	chr12	110447386	110447586	+	897.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135001, intron 1 of 13)	CpG	307.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	3.60127742046625	3.62084402920841	3.81565489931458	3.58124454524537	3.76752661015378	4.03297361974221	3.52956252173958	3.9963285667591	0.565782033729265	0.230703202610062	0.540207357674242
Merged-chr1-85658707-4	chr1	85658598	85658798	+	892.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013673, intron 1 of 19)	intron (NM_013673, intron 1 of 19)	8710.0	NM_001313714	20684.0	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	4.59448656542862	4.39721713425821	4.3899010360614	4.53315713221463	4.53739869994681	4.6058909588136	4.41385729290312	4.47318854925659	0.0561317615737166	0.875972403293436	0.953371302804582
Merged-chr19-53314318-4	chr19	53314242	53314442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	CpG	2897.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	8.38350783122362	8.28555427865461	8.35787021485499	8.50288838621	8.46172632023075	8.49100498927486	8.62618563174234	8.54896726279628	0.180263633720568	0.23194380000998	0.541542911150474
Merged-chr5-123377452-8	chr5	123377390	123377590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17308.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	4.34923839143892	4.29968687062905	4.48706085908913	4.4601588352442	4.79999734658812	4.7835069673521	4.58954191410919	4.92023111737601	0.812398473257237	0.0209331299430082	0.132057011097526
Merged-chr3-129879351-4	chr3	129879259	129879459	+	972.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104611, intron 1 of 4)	intron (NR_104611, intron 1 of 4)	753.0	NM_023196	66350.0	Mm.151951	NM_023196	ENSMUSG00000027999	Pla2g12a	2310004B05Rik|GXII|GXII-1|GXII-1-PLA2|Pla2g12|Rossy|mGXII-1	phospholipase A2, group XIIA	protein-coding	5.15798681385017	5.09959935497838	5.31618670105681	5.57700237917497	5.55810687529566	4.99764606531486	5.31882917464951	5.25195175592879	-0.0161303146798781	0.959919517523763	0.985662310124408
Merged-chr2-163472642-4	chr2	163472537	163472737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028122)	promoter-TSS (NR_028122)	-8.0	NM_173397	228859.0	Mm.242917	NM_173397	ENSMUSG00000048486	Fitm2	AI414861|D930001I22Rik|Fit2	fat storage-inducing transmembrane protein 2	protein-coding	6.49591142307205	6.47127751202578	6.26051114981361	6.46580564945492	6.55684437756087	6.58740367588159	6.60426527143304	6.45881490298794	0.178236166972052	0.395021384092066	0.694006264372866
Merged-chr1-143710596-4	chr1	143710501	143710701	+	974.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	-7708.0	NM_145991	214498.0	Mm.156727	NM_145991	ENSMUSG00000026361	Cdc73	8430414L16Rik|C130030P16Rik|C81219|Hrpt2	cell division cycle 73, Paf1/RNA polymerase II complex component	protein-coding	4.37938128317154	4.38785413742467	4.6241121043374	4.74296837185154	4.21619431605076	4.41546992439925	4.36065927111866	4.69282998760881	-0.293667992421773	0.449694005388721	0.734839862538956
Merged-chr4-138083302-4	chr4	138083196	138083396	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355700, intron 2 of 30)	intron (NM_001355700, intron 2 of 30)	55222.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	4.76968167688615	4.67074343700451	4.92192563056398	4.88278942574982	5.10106357718484	5.22876980486764	4.9332242800879	5.08550991885845	0.531715339330904	0.0930939627301633	0.333772303136732
Merged-chr6-50163031-7	chr6	50162921	50163121	+	904.892883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361248, intron 5 of 13)	intron (NM_001361248, intron 5 of 13)	52161.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	2.92116496656766	3.01911729678793	2.99250230115779	2.78863327004565	3.43964105970023	3.57448514087618	3.28695631448805	3.35260000601821	1.94867061260322	0.000451035448243176	0.00709956925486533
Merged-chr1-165461975-4	chr1	165461863	165462063	+	932.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027430, intron 1 of 4)	intron (NM_027430, intron 1 of 4)	755.0	NM_027430	70456.0	Mm.195625	NM_027430	ENSMUSG00000026568	Mpc2	0610006C01Rik|2010002I07Rik|2610205H19Rik|AA108335|Brp44|ESTM43	mitochondrial pyruvate carrier 2	protein-coding	4.71605043106478	4.1615268479808	4.71682545043647	4.94589286951923	4.82609078242352	4.77396707384066	4.40810486902572	4.5566326809603	-0.0454461600072875	0.909518807072043	0.966320459266825
Merged-chr15-93251955-6	chr15	93251819	93252019	+	842.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033275, intron 4 of 7)	intron (NM_001033275, intron 4 of 7)	23260.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	3.9134463917539	3.83889654275731	3.76470238467679	4.33864185733369	3.7335831343859	3.51808353078063	3.52247825620123	3.91166079761217	-0.917642541954268	0.0684358109424005	0.279374984093172
Merged-chr9-63758168-4	chr9	63758071	63758271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016769)	promoter-TSS (NM_016769)	-177.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	7.60655606572235	7.78995137610446	8.0047734084544	7.66095763017949	7.58623552415043	7.75856125095537	7.7729237965287	7.48251693638119	-0.153380459869185	0.402079733055297	0.699626795393038
Merged-chr19-8683248-4	chr19	8683165	8683365	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001112697, exon 3 of 3)	3' UTR (NM_001112697, exon 3 of 3)	19260.0	NM_001112697	12669.0	Mm.240607	NM_007698	ENSMUSG00000032773	Chrm1	Chrm-1|M1|M1R	cholinergic receptor, muscarinic 1, CNS	protein-coding	4.47415907357827	4.42969105118458	4.29520087781238	4.58401695115587	4.34545311850042	4.83780614416759	4.53485087205061	4.42944523334167	0.183296150544913	0.628529835954931	0.84155913533297
Merged-chr5-116023545-3	chr5	116023478	116023678	+	742.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031869, intron 1 of 6)	intron (NM_031869, intron 1 of 6)	850.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	2.77943800239956	2.78987596592926	3.01247715688833	2.44545806185853	2.4489734388932	2.60519393065064	2.70511510323162	3.06259898816152	-0.21092832591367	0.770566519479271	0.910244275228485
Merged-chr1-35860892-4	chr1	35860755	35860955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-207545.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	5.40938980000542	5.72951823730354	5.86628954449464	6.09133212559056	5.84894890434373	5.62092944420337	5.56235138704888	6.04984490270239	-0.0436068633293463	0.881355277369803	0.955384724180766
Merged-chr18-79293966-4	chr18	79293879	79294079	+	980.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-184588.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	5.49118078055206	5.53291186297572	5.76491011086317	6.0469835737322	5.32747841612279	5.4267758004982	5.22307624502142	5.02738229238966	-0.844495438549892	0.00555356362609931	0.0513239555105327
Merged-chr5-105654832-4	chr5	105654714	105654914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45155.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	5.35009594144628	5.48038674230116	5.32105868470158	5.24470605455995	5.10355234024136	5.49542784723	5.58831669994575	5.28672599331502	0.0455956792596076	0.877452965618323	0.954164706824192
Merged-chr2-126490815-4	chr2	126490734	126490934	+	931.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 1 of 27)	intron (NM_001359975, intron 1 of 27)	719.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	4.73204135374872	5.05645408417063	4.95364201625121	5.12018256427107	4.64684143224556	4.78419113035022	4.71089260575319	5.01602399075885	-0.394988525357313	0.241851861169715	0.552375216627601
Merged-chr6-113334249-4	chr6	113334143	113334343	+	984.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_149720)	TTS (NR_149720)	7267.0	NM_010957	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	5.68364401673614	5.5372702941008	5.12195071274809	5.6573903383079	5.5765147294701	4.8966609466043	5.16548417720099	5.18729411740206	-0.494923862912919	0.132900835428967	0.406034560103701
Merged-chr14-47371866-4	chr14	47371777	47371977	+	898.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1983.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	4.66427702538219	4.49681002039226	4.36649072472339	4.64822531170275	4.63815333394641	4.90894313170524	4.48267008042388	4.69940631228617	0.281169382930453	0.433304626087632	0.722830392839943
Merged-chr7-19001266-4	chr7	19001158	19001358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145579, exon 3 of 3)	3' UTR (NM_145579, exon 3 of 3)	-2807.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	5.68384623348758	5.8285641311472	5.63427977333255	5.67668109770005	5.6358673286314	5.72934765931779	5.44198734863204	5.34230258349072	-0.267812588661561	0.318249651521222	0.630081551669701
Merged-chr8-94667098-1	chr8	94666998	94667198	+	969.3333130000001	f0_balb.idr	promoter-TSS (NM_024269)	promoter-TSS (NM_024269)	7.0	NM_024269	107566.0	Mm.393247	NM_024191	ENSMUSG00000031776	Arl2bp	1700010P10Rik|1700027H16Rik|6330544B05Rik|AI482273|AI849834|BART|Bart1	ADP-ribosylation factor-like 2 binding protein	protein-coding	4.02496727961332	4.37298065089826	4.80987892724087	4.52188330297767	4.22047751895608	4.45720589612804	4.35295652362213	4.36989961727773	-0.271491571482298	0.507182646196423	0.772710503440438
Merged-chr6-87525360-4	chr6	87525235	87525435	+	986.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	7924.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	5.72435765530044	5.58288615078348	5.77249662121076	6.31103724401956	5.37291078618959	5.48135625439915	5.02030025454099	5.54109216610078	-0.89795778752451	0.00460965908505175	0.0447383316082491
Merged-chr18-53746828-3	chr18	53746728	53746928	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2281.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	6.37935620511067	6.33225277766406	6.27966596461963	6.54418329611055	3.7482379858616	4.09229482669898	4.07572683853457	4.22936564916161	-5.86538450263689	3.41087834065717e-23	1.75848340474591e-20
Merged-chr12-108631241-4	chr12	108631121	108631321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163395, intron 1 of 12)	L1MEc|LINE|L1	-4532.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	7.00982992797757	7.05968093555448	7.38291903822385	7.21650968561378	6.73199621996551	6.60234282171936	6.93808527791263	6.9936718274039	-0.487891323254159	0.018244258434309	0.120408722401083
Merged-chr9-99587831-2	chr9	99587738	99587938	+	747.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12039.0	NM_031403	83703.0	Mm.31324	NM_031403	ENSMUSG00000032469	Dbr1	AW018415	debranching RNA lariats 1	protein-coding	3.31845951448774	3.36952380130051	3.42302797156278	2.89302596878709	3.00057689229655	3.12626887941918	3.25056142587465	3.20394661692079	-0.434342654923626	0.463713099478989	0.744976486222937
Merged-chr2-66256645-4	chr2	66256546	66256746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290669)	promoter-TSS (NM_001290669)	-29.0	NM_001290669	73668.0	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	7.56106359331823	7.28458555697774	8.00343604761485	7.87126916797306	7.47512165422279	7.4488308401899	7.71547509669818	7.41490188030134	-0.25571663822659	0.229952052651928	0.539096658041788
Merged-chr8-34965761-4	chr8	34965658	34965858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175091)	promoter-TSS (NM_175091)	-68.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	8.57579417941467	8.73235275457905	8.51437270896419	8.68353707363612	8.73945054904752	8.76429285698292	8.6197898331519	8.60422936518518	0.0650885447417516	0.660654600049282	0.858993383327997
Merged-chr18-3983162-4	chr18	3983053	3983253	+	881.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-182679.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	4.403874540426	4.62654172637681	4.50409355717374	5.34326002404952	5.34918342039677	5.24911302785576	4.85435784647729	4.59390788013196	0.490939497769732	0.261540718750476	0.573476890516299
Merged-chr5-129725038-4	chr5	129724984	129725184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008095)	promoter-TSS (NM_008095)	9.0	NM_008095	14467.0	Mm.12468	NM_008095	ENSMUSG00000029432	Nipsnap2	AV006093|Gbas	nipsnap homolog 2	protein-coding	7.06917204819805	7.23768583151341	6.67949230521287	6.95052656494756	6.97937377561457	7.32820197431689	7.01063044932432	7.31466826756431	0.222228083434748	0.300655711210578	0.612548544835798
Merged-chr7-123366157-6	chr7	123365988	123366188	+	864.0639039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	3827.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	4.70087430028461	4.22466291576423	4.08957321553946	4.42209678543036	4.27545943041094	4.21508610151748	4.12352471117479	4.48810725911733	-0.233808004259126	0.569275405523759	0.809366519988776
Merged-chr1-165762094-4	chr1	165762002	165762202	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	-1656.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	5.0689023559849	4.65203293340166	5.03803184028261	4.74681988578734	5.20861926259393	5.00339721156656	4.9138798234108	4.66464127244327	0.190262582773823	0.582429100435201	0.816543320790947
Merged-chr12-85169591-4	chr12	85169432	85169632	+	916.520874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271705, exon 5 of 7)	exon (NM_001271705, exon 5 of 7)	6450.0	NM_001271705	18654.0	Mm.4809	NM_008827	ENSMUSG00000004791	Pgf	AI854365|PIGF|Plgf	placental growth factor	protein-coding	3.80186637616055	4.2712222788752	4.75234674995441	4.04287035337839	4.45610425796199	4.75142496717538	4.08052724371453	4.54112974209137	0.505038255665296	0.277802547871362	0.589837356966223
Merged-chr8-41004259-2	chr8	41004159	41004359	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 7 of 13)	intron (NM_001005863, intron 7 of 13)	-13209.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	2.8589109797765	2.71706090046229	3.0498900411845	2.82843035092092	3.12039260122017	3.09988072254318	2.97857032376256	3.3137488185101	1.12045911319636	0.0583081537864505	0.253826437426809
Merged-chr13-58590794-2	chr13	58590694	58590894	+	845.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022317, intron 1 of 17)	B3|SINE|B2	20083.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	2.82951080600124	2.43570999452647	2.56602952828978	2.45388585429772	2.99748759945276	2.87760357576809	2.75848736627475	2.82834206664648	1.46039430698902	0.0280259619278813	0.160178251490659
Merged-chr7-113513724-4	chr7	113513629	113513829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027379)	promoter-TSS (NM_027379)	-105.0	NM_001285831	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	8.71320412761262	8.70170504278947	8.80922742913799	8.90724118424798	8.58607416689743	8.81753381308833	8.83119237488413	8.49505424970355	-0.125599583009762	0.42949568870141	0.720394119122296
Merged-chr1-180983233-4	chr1	180983137	180983337	+	982.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR22_Mus|LTR|ERVK	34332.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	5.13852502560545	5.24876954009512	5.33541388408059	5.39224866520043	5.49582101675754	5.24581012080791	5.47750965418198	5.78414855392128	0.395958549355622	0.174009683840204	0.468259409685355
Merged-chr5-65435964-4	chr5	65435866	65436066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009466)	promoter-TSS (NM_009466)	-124.0	NM_009466	22235.0	Mm.344831	NM_009466	ENSMUSG00000029201	Ugdh	Udpgdh	UDP-glucose dehydrogenase	protein-coding	8.06000699315901	8.08133865773449	8.0745288349314	8.46592789166492	8.17699853693803	8.21216306952374	8.3625322438052	7.97376374486986	-0.00477458957317887	0.979187566836386	0.992606608380485
Merged-chr17-36903760-3	chr17	36903659	36903859	+	929.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146077, intron 3 of 7)	ID_B1|SINE|B4	5629.0	NM_146077	224762.0	Mm.213417	NM_146077	ENSMUSG00000058063	Trim31	BC026666|HCG1|HCGI|RNF	tripartite motif-containing 31	protein-coding	3.94587615969491	4.27129910979632	3.94643997678273	4.48223619023847	3.82246981645167	3.90564292835871	3.87926503942486	3.83922531114935	-0.925669624832313	0.0414840301599056	0.206286976579008
Merged-chr5-143058459-1	chr5	143058359	143058559	+	674.0	f0_balb.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	54561.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	3.31177748299247	3.39780358549156	3.42600383928886	3.53151630819146	3.62058841574238	3.15866192495627	3.46555591604808	3.42417622677399	0.0364779757832641	0.945121274682325	0.980309969792321
Merged-chr8-94365719-4	chr8	94365595	94365795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 24 of 24)	intron (NM_019415, intron 24 of 24)	-20734.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	8.22461199197237	8.318889547347	8.69631910347899	8.16124998941626	8.22045197273432	8.31744696843666	8.47248344898258	8.17202086506404	-0.0797821195239509	0.664055438583115	0.860824757192769
Merged-chr1-181014908-4	chr1	181014828	181015028	+	975.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010145, intron 1 of 8)	intron (NM_010145, intron 1 of 8)	2641.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	5.1671537933204	5.09390746280856	6.63539078813099	6.54617137198086	5.06566778893442	5.01941706174627	5.68950725146603	5.90051996458162	-0.923420134154183	0.204905140536848	0.508434183862243
Merged-chr17-34587533-4	chr17	34587378	34587578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010929, exon 30 of 30)	exon (NM_010929, exon 30 of 30)	-2328.0	NM_134116	106512.0	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	6.84753107070298	7.38445093084232	7.12737535213605	6.77356309796117	6.944400137749	7.02610393624614	6.86923012815134	7.23099442862536	-0.0379117335134512	0.866152094990681	0.949861736890724
Merged-chr13-30659928-4	chr13	30659831	30660031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037955)	promoter-TSS (NM_001037955)	-128.0	NM_001037955	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	7.38974477193562	7.22777212594005	7.12869988741129	7.16268501668592	7.74683999351453	7.57791892629005	7.67340243887035	7.04860869875841	0.423187859396878	0.0455325413655812	0.218612858440091
Merged-chr4-63553942-4	chr4	63553845	63554045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4818.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	7.38340901107478	7.56253227280067	7.84179427813106	7.77215437676625	7.53533486542156	7.31510619229164	7.51018595173664	7.37955509793592	-0.284763214748911	0.131154415402024	0.403104428771734
Merged-chr15-11399800-4	chr15	11399700	11399900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033074)	promoter-TSS (NM_033074)	-142.0	NM_033074	110960.0	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding	9.30334483007169	9.21385087196119	9.07750861004586	9.30646224766314	9.32044396514971	9.1920644292047	9.13577442613555	9.14156992299731	-0.0357256881275309	0.802789893599404	0.923936032101707
Merged-chr11-119946922-3	chr11	119946823	119947023	+	912.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	3831.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	3.10081652319217	3.0012297594267	3.21695884836623	3.20776481945058	3.19314680099434	3.27093510591348	2.96515522528059	3.15873417513018	0.0549575162949705	0.922159720193559	0.971140373783564
Merged-chr12-3235856-3	chr12	3235768	3235968	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015551)	promoter-TSS (NR_015551)	77.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	6.8286381742498	6.77759689764795	6.8962383108424	6.50019788205503	6.78677621497693	7.08493054985318	6.83522477606946	6.50013809248427	0.0978616119936536	0.663889899292803	0.860780365686037
Merged-chr18-44393583-4	chr18	44393443	44393643	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027490, intron 1 of 10)	intron (NM_027490, intron 1 of 10)	13043.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	4.31243813415234	4.50276762681752	4.49063781912261	3.94178095773321	4.69832982824496	5.13600924824597	4.38464024630752	4.10575730476207	0.700758307939068	0.117504892987056	0.379142374339333
Merged-chr2-18800115-2	chr2	18800015	18800215	+	834.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131254, exon 1 of 1)	non-coding (NR_131254, exon 1 of 1)	1703.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	2.91103664901982	2.94084980932628	3.16282468798595	2.61727558798515	3.2577670966776	3.21762427367887	3.09233410427747	3.32194016638298	1.29677024644229	0.0334712881536956	0.179997946471131
Merged-chr9-50661673-4	chr9	50661564	50661764	+	970.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1884.0	NM_145614	235339.0	Mm.285076	NM_145614	ENSMUSG00000000168	Dlat	6332404G05Rik|DLTA|PDC-E2	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	protein-coding	4.92072209171223	4.82627111062591	4.59338858390555	4.37081605075497	5.54357361742203	4.9061733406909	4.89755778872956	5.53615542624708	1.1437723692457	0.0018842410498684	0.0223233012131462
Merged-chr8-84420722-3	chr8	84420611	84420811	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 1 of 47)	L1ME1|LINE|L1	5347.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	7.03752571997646	7.13066685805925	6.74580842293354	6.87854136274312	3.75131682977134	4.33775144329595	4.23417609479123	4.31970369333095	-6.87016780158463	3.64976178539095e-24	2.07829115297874e-21
Merged-chr11-68503019-4	chr11	68502927	68503127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081566)	promoter-TSS (NM_001081566)	8.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	6.12118304955449	6.26352956941324	5.99464715716794	5.90236725772327	6.2510818933006	6.37521298766336	6.09092907475923	5.79759056781617	0.121751936400279	0.63235316354798	0.843863531835525
Merged-chr2-141033651-4	chr2	141033555	141033755	+	909.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 5 of 18)	MLT1C|LTR|ERVL-MaLR	-362179.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	4.02454496211261	4.85645514803646	4.37902747013414	3.74921617419974	4.97085659209478	4.59778959331586	4.35890778999861	4.2844198832183	0.589447185311326	0.225294715176022	0.533652330499637
Merged-chr4-133813571-5	chr4	133813448	133813648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-59937.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	6.55137200045145	6.69308185871775	6.29321395547043	6.60824548565538	6.82972877002385	6.9006984334496	6.87891198346135	6.92155898553527	0.466086960762911	0.0232326475616971	0.141223456380651
Merged-chr1-131287480-4	chr1	131287383	131287583	+	855.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081011, exon 23 of 23)	3' UTR (NM_001081011, exon 23 of 23)	-7920.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	4.4971041737905	5.43242083930987	4.30684233199759	4.20217795515849	4.44614826391254	5.17710507174185	4.23625336822532	4.58090795774851	-0.119237252050428	0.810688619533249	0.926854276252049
Merged-chr7-142374255-2	chr7	142374155	142374355	+	840.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347541)	promoter-TSS (NM_001347541)	-509.0	NM_001347541	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	3.34416239708103	3.00094519282656	3.22083949559163	3.30831385526129	3.4522856493114	3.39900832839242	3.44356393630888	3.9058700112744	1.14533808892561	0.0372304044657866	0.192490953691452
Merged-chr3-95623728-2	chr3	95623628	95623828	+	827.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-1252.0	NM_019561	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	2.15488380627699	2.09915336566414	2.15509374663157	2.08691776881651	2.14631042730981	2.39902955636255	2.34991575798939	2.41925743974948	1.31291887113196	0.0794271749060856	0.305137800710471
Merged-chr17-69177264-4	chr17	69177143	69177343	+	974.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	17887.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	4.60728676263165	4.62911036469682	4.94360545730277	4.96821256214055	4.82076373515832	4.69640833345006	4.74561646554394	4.9724158248028	0.00840662526053751	0.980502664752667	0.99281244474172
Merged-chr15-77368335-4	chr15	77368239	77368439	+	924.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30771.0	NM_029419	75761.0	Mm.232636	NM_029419	ENSMUSG00000010601	Apol7a	9130022K13Rik|Apol3	apolipoprotein L 7a	protein-coding	4.84264375194144	4.87098769832311	4.26715808230675	4.92436738759029	4.53984802879422	4.16983269935501	4.71727998563835	4.58436216967054	-0.519844874760171	0.191228523484311	0.490631496828288
Merged-chr2-156542944-4	chr2	156542836	156543036	+	864.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013510, exon 22 of 22)	3' UTR (NM_013510, exon 22 of 22)	-4640.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	3.80673790484915	3.74949184177871	3.75569169735526	3.77383960354652	4.13550617767412	3.57744951778251	3.68763611718236	3.94814832597722	0.279966869935221	0.550826134266072	0.798698284283594
Merged-chr15-30468998-4	chr15	30468863	30469063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 2 of 21)	intron (NM_001355502, intron 2 of 21)	296370.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	8.11747440789468	7.95233574691225	8.05291338756559	8.26784603694165	8.41694730059955	8.30291463611109	8.44416035880006	8.50640915921504	0.39491825249817	0.0141864969041976	0.10084696525955
Merged-chr5-104046824-4	chr5	104046706	104046906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028794)	promoter-TSS (NM_028794)	-58.0	NM_028794	74167.0	Mm.241484	NM_028794	ENSMUSG00000029310	Nudt9	1190002C07Rik|ADPR-PPase|AI462474	nudix (nucleoside diphosphate linked moiety X)-type motif 9	protein-coding	8.5469260646244	8.58452189941884	8.42875497695621	8.39460629711512	8.40166255671317	8.86130381456111	8.69359443377806	8.40221407416501	0.140901962493317	0.414026238289952	0.708838812152508
Merged-chr10-118080163-3	chr10	118080049	118080249	+	730.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B2|LTR|ERVK	-61638.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	3.31940629917327	3.34768428353185	3.16183448658236	3.25393042683663	2.75057255305629	2.87977379966124	2.83796323383739	2.98004225516068	-1.86359508085447	0.00319362906722364	0.0335081549787605
Merged-chr4-8667340-4	chr4	8667255	8667455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23051.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	7.07045382895902	7.38834793913866	7.50770806426026	7.22449298820561	7.07493348924748	7.22402506436548	7.32234566853651	7.18505407992556	-0.14177789431768	0.463453755502707	0.744754929853415
Merged-chr11-117989621-4	chr11	117989549	117989749	+	814.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 1 of 9)	intron (NR_151726, intron 1 of 9)	2792.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	3.66628101123213	3.97970956896219	4.2322673444094	3.72221465006984	3.99815889935204	3.898870356952	3.96451854130522	3.88219909481666	0.080697857277851	0.860016384123522	0.947103787565804
Merged-chr5-99327252-4	chr5	99327135	99327335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-74308.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	8.02706912466865	8.20432257893048	8.12478020116323	8.15252224616836	8.01344474364867	7.97153371074638	8.04863262316765	7.94029654814017	-0.175018549984121	0.256770430707431	0.568480006866985
Merged-chr5-135630717-3	chr5	135630609	135630809	+	853.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1945.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	4.30263246047201	4.07600232061726	4.01766636929039	4.14108791747217	3.56340065465803	3.76923831363117	3.95360578051543	3.38130845244026	-1.32776471229632	0.00633018826541273	0.0564207952095934
Merged-chr1-149946693-4	chr1	149946584	149946784	+	885.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	14606.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	4.42910404377259	4.52379948161542	4.51316087961722	4.51941849140633	4.64448857990804	4.4688674259417	4.36666385220079	4.42702114996183	-0.0216066886409994	0.95240878615535	0.983110341498473
Merged-chr2-143837425-4	chr2	143837351	143837551	+	931.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291061, intron 5 of 7)	intron (NM_001291061, intron 5 of 7)	25722.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	4.36337370675474	4.51017011447655	4.40535498985265	4.33518637057894	4.47464579251736	4.20870959925533	4.30202067954518	3.85530832133649	-0.389377727541752	0.346180311561542	0.654417135331553
Merged-chr17-27520729-2	chr17	27520629	27520829	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-17196.0	NM_001291045	268934.0	Mm.358940	NM_001013385	ENSMUSG00000063239	Grm4	Gprc1d|mGluR4	glutamate receptor, metabotropic 4	protein-coding	3.09789867936952	2.92878940760052	2.98396974499037	2.51255796902769	2.96765315855323	3.09559294102691	2.91209622845031	2.78996095541747	0.225111221956592	0.732838895141809	0.894223505002294
Merged-chr12-111471336-4	chr12	111471223	111471423	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	14500.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	6.38141926432805	7.0190729554515	6.03809720005068	5.13315476234413	6.36645221923422	6.5586374533161	5.91617863917441	5.39419107395114	-0.291327875616896	0.658096059985823	0.857677183558236
Merged-chr7-48876701-4	chr7	48876569	48876769	+	858.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013368, intron 4 of 12)	intron (NM_001013368, intron 4 of 12)	4372.0	NM_001013368	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	3.95043493273671	3.84029739290259	4.04430105772643	4.20294718450252	3.96626052621419	3.97049439861782	3.83497789009266	3.73928821808116	-0.397587400725477	0.370109206658751	0.674277021263455
Merged-chr7-31172452-4	chr7	31172343	31172543	+	774.712524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	10085.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	4.38387712257049	4.26513235374239	4.21521737396339	3.95479261727741	4.04333809497932	4.38716612593722	4.24054177747244	4.16657505990608	0.0224626647828344	0.956664432325993	0.984720649427078
Merged-chr11-80177407-4	chr11	80177307	80177507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 10 of 10)	intron (NM_172133, intron 10 of 10)	-6465.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	7.09038774442729	7.07500346316416	7.41668520792028	6.85619016140043	7.14938660267475	7.26852934525497	7.09122389734815	7.22260599568568	0.0972497010158539	0.634683597927407	0.84534615401798
Merged-chr4-123996006-4	chr4	123995901	123996101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78568.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	6.91322407228716	6.71922125176026	6.84815741353835	6.89930485743131	6.55167022073442	6.91098472157603	6.97825722865068	6.87021883691104	-0.029397314705371	0.887470981171386	0.957799052224803
Merged-chr17-36020900-4	chr17	36020795	36020995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008207)	promoter-TSS (NM_008207)	-335.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	6.52776272980348	6.45004007134998	6.27261343350668	6.73828389395484	6.54170438130547	6.68860087125426	6.63581079446098	6.81808107176532	0.209655882743972	0.347759204977277	0.65559108115257
Merged-chr6-88047997-4	chr6	88047897	88048097	+	927.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2727.0	NM_009005	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	4.38313965479212	4.20178486685252	4.2521279816139	4.35535580396171	4.59608947760694	4.06488912814726	4.48184234032081	4.38105594925515	0.246770082278849	0.530458772149744	0.786540312295789
Merged-chr14-21654033-4	chr14	21653935	21654135	+	967.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017479, intron 12 of 16)	MTD|LTR|ERVL-MaLR	60541.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	4.97432294878239	5.31759169773264	5.71721859336694	5.68429937034955	5.10433530047996	4.94988745820365	5.06173547251571	5.42365820676676	-0.579965367641661	0.0839278792691461	0.315024839083937
Merged-chr10-21651652-4	chr10	21651549	21651749	+	947.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39196.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	4.5120016926475	4.43130148496184	4.67047204009568	5.09466443901976	4.40152797182279	4.07095439065814	4.71961935043132	4.55107616506553	-0.578770371478399	0.166540238118374	0.457880042451936
Merged-chr1-131866562-4	chr1	131866448	131866648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144875)	promoter-TSS (NM_144875)	-729.0	NM_144875	226422.0	Mm.34027	NM_144875	ENSMUSG00000026433	Rab29	Rab7l1	RAB29, member RAS oncogene family	protein-coding	6.659942683453	6.52846598890501	6.69007838726748	6.6038742168597	6.42876266294744	6.32130444424307	6.58260990159188	6.28419142643355	-0.303202068986956	0.152996042514677	0.437529341508725
Merged-chr6-29264541-4	chr6	29264451	29264651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7937.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	7.4433341775936	7.4770904398834	7.40644418455771	7.29993898435661	7.3302645076753	7.33818011241365	7.22664966582188	7.31090775231302	-0.133784873708107	0.443915773957521	0.730406204802171
Merged-chr13-94295093-3	chr13	94294988	94295188	+	785.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-9257.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	3.8527055195961	3.93795875256609	3.90104481226665	4.20764943504015	3.72217338373428	3.57348722648652	3.44697660313225	3.74988966193686	-1.07776699182386	0.0254782969416658	0.150449618218917
Merged-chr8-22185756-4	chr8	22185626	22185826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004140)	promoter-TSS (NM_001004140)	93.0	NM_001004140	80986.0	Mm.22448	NM_001004140	ENSMUSG00000037725	Ckap2	AI461656|AW228814|LB1	cytoskeleton associated protein 2	protein-coding	6.88812602066909	6.93198418037504	7.65944089171224	7.03547024030427	6.50275784831037	6.83100687186722	6.71229483892459	6.87089250356055	-0.603920915502461	0.0140629960345638	0.100319702820627
Merged-chr5-149265054-4	chr5	149264960	149265160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308462)	promoter-TSS (NM_001308462)	56.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	5.56490652928071	5.20701956886548	5.07627940136063	5.53310144087273	5.42649989229311	5.57744062772323	5.43264546519559	5.45619020135632	0.17045251854235	0.561036754156114	0.804849597634179
Merged-chr3-52269169-3	chr3	52269077	52269277	+	949.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019739, exon 1 of 3)	exon (NM_019739, exon 1 of 3)	840.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	4.79854905872687	4.40300832758259	4.97637990407242	4.75524089016573	5.14239285050128	4.72816583631052	5.07663184976319	4.97297778362357	0.505660148187506	0.143799147296384	0.422314029539782
Merged-chr8-120114023-4	chr8	120113921	120114121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163762)	promoter-TSS (NM_001163762)	-131.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	8.51560077239122	8.69739750489991	8.55473967258072	8.25678078353652	8.35754749675315	8.55807629670559	8.40876906459346	8.14017541202031	-0.173443762053582	0.325389584715824	0.636918525203158
Merged-chr2-119741761-2	chr2	119741618	119741818	+	718.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146125)	promoter-TSS (NM_146125)	-619.0	NM_146125	228550.0	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding	3.36831306894699	3.08698279628935	2.95341297310365	2.76543612803881	2.98069765514805	3.53707422930097	3.0745986002092	3.20471535057057	0.603998196381463	0.329583649512847	0.640940866163718
Merged-chr8-71368520-4	chr8	71368363	71368563	+	816.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025917, intron 4 of 7)	intron (NM_025917, intron 4 of 7)	1246.0	NM_025917	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	3.57662303623768	3.43949531924596	3.08413163479669	3.36020601005226	3.69277624707206	3.79495575659482	3.40010140907908	3.46809233503472	0.735521444651846	0.164573432047107	0.454830996687285
Merged-chr5-122697493-3	chr5	122697444	122697644	+	968.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10000.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	4.21713570000737	4.49608702959702	4.38223318720336	4.48994217118666	3.83419809514505	4.10128778724037	3.79434093645668	3.80649251550294	-1.3877275297963	0.00121154419355318	0.0156793643914403
Merged-chr17-24360104-2	chr17	24359999	24360199	+	586.0	f0_balb.idr|f1_balb.idr	intron (NM_013855, intron 2 of 32)	intron (NM_013855, intron 2 of 32)	8076.0	NM_001039581	27410.0	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	3.32234399099174	3.198818801685	3.26837221410232	3.17210887643102	3.04689619519518	3.06410684272941	3.30929189619542	3.26658655369918	-0.242956633314117	0.658726926014387	0.857995155933081
Merged-chr2-90641633-4	chr2	90641557	90641757	+	997.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-35558.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	5.43258255763383	5.89106052837819	5.40368816652543	5.43373380777247	5.46499263177287	5.42161711549548	5.49132503523491	5.78656235246654	-0.0137927339892099	0.962176179496195	0.986416651799321
Merged-chr14-54731591-4	chr14	54731493	54731693	+	721.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 7 of 10)	intron (NM_016972, intron 7 of 10)	-19419.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	3.69379547759675	3.65559384341558	3.57933629100751	3.73742032645173	4.03050819102432	3.69639187843885	3.97024587942435	3.98571123720732	0.745898527069662	0.0984012987054558	0.343967717156649
Merged-chr6-148443574-1	chr6	148443474	148443674	+	561.0	f0_balb.idr	intron (NM_198967, intron 1 of 19)	intron (NM_198967, intron 1 of 19)	778.0	NM_198967	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	2.85613492807292	2.65078827391515	3.10501011340102	2.86327246842513	3.05802254300258	3.15851564480255	3.0355174683734	3.21147210807851	1.00157586815248	0.096619891836866	0.340574096588254
Merged-chr19-46148536-4	chr19	46148435	46148635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008852)	promoter-TSS (NM_008852)	-210.0	NM_008852	18742.0	Mm.6255	NM_008852	ENSMUSG00000025229	Pitx3	Ptx3|ak	paired-like homeodomain transcription factor 3	protein-coding	5.82584871067063	6.09136739419272	5.84926093857991	5.71556850063379	5.50262864639087	5.51577152617628	5.54988732411945	5.3655903930201	-0.646389748206056	0.0159471022002862	0.109428206643611
Merged-chr16-31275253-4	chr16	31275159	31275359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025800)	promoter-TSS (NM_025800)	18.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	7.38993339122221	7.44471246435084	7.22407535543472	7.21556507009367	7.45452138883871	7.36731421192213	7.37384953377466	7.1964898841385	0.0503904229697829	0.782323125754943	0.91529005173258
Merged-chr5-140798414-3	chr5	140798314	140798514	+	875.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	ID|SINE|ID	32017.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	3.4816612756981	3.04993419800371	3.43198162324621	3.3668313978726	3.13354197946572	3.32059783790882	3.19731102066799	3.26651766873501	-0.421641123362328	0.444375247019864	0.730776187131828
Merged-chr11-44355071-4	chr11	44354992	44355192	+	821.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44971.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	3.93441723635947	3.88471825354425	4.27181757405281	4.03668726225324	4.18611764882943	4.11279436451611	4.44583240441666	4.38990910515512	0.632978259995678	0.123757975548086	0.390278186236199
Merged-chr9-66978100-3	chr9	66978007	66978207	+	819.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-2623.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	3.67766534440778	3.5374925558645	3.57159556016017	3.44461244704994	3.73798579929649	3.68882883407893	3.38194048849093	3.90856074327141	0.444064255777325	0.364143474347877	0.669076856929904
Merged-chr16-23308458-2	chr16	23308358	23308558	+	868.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	17988.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	2.85738848414006	3.16693267352079	2.85774626772692	2.84079718142058	2.57657278390643	2.96650133467664	2.57752900249128	2.79300447680774	-0.958849998148412	0.154652243585968	0.439914960084947
Merged-chr14-70823284-4	chr14	70823186	70823386	+	925.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29647.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	5.36830200507258	5.14155582115644	5.14029836021637	5.61376960442848	4.95410454351616	4.83117047620141	4.83760828571614	4.50182727618671	-1.05635472378159	0.00203345942318653	0.0236928479756087
Merged-chr6-90736828-4	chr6	90736722	90736922	+	928.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	CpG	-20293.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	4.6830838628717	4.34059663782779	4.40462661348387	4.44581167016262	4.47009222406692	4.5340053720342	4.58872713298848	4.68074557218013	0.218093680020953	0.545739931919364	0.795980613958413
Merged-chr4-24899389-4	chr4	24899291	24899491	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026742, intron 2 of 2)	L2a|LINE|L2	1308.0	NM_026742	68493.0	Mm.204831	NM_026742	ENSMUSG00000028261	Ndufaf4	1110007M04Rik|3000003G13Rik|AW214064	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	protein-coding	4.33361384570881	4.33639052258416	4.04275999042378	4.82313088453255	4.08366768854017	4.1117176171558	4.47621713071454	4.41562966246741	-0.366461216259143	0.406574071550828	0.703013138319358
Merged-chr2-22816466-4	chr2	22816358	22816558	+	788.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	ORR1E|LTR|ERVL-MaLR	42131.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	3.90695074062785	3.89456913263051	3.79731004537365	3.97136735819243	3.94313009580725	4.18160007267084	4.21325213589622	4.34728289735868	0.716169410727367	0.0916497294740275	0.330905265860553
Merged-chr2-50669468-4	chr2	50669378	50669578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-240206.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	6.41954589363595	6.80846798935011	7.02004464977484	6.70058822042195	6.86790915826398	6.99476711445226	6.64023687588924	6.47100037223299	0.0110853878255828	0.962112369459137	0.986416651799321
Merged-chr13-59003913-4	chr13	59003811	59004011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	196214.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	6.92080522826205	6.72648920676791	6.74190932205345	6.7590094403372	7.01795161371541	7.08521550805368	6.73693976228468	6.9041533342154	0.222062045015381	0.264612008274128	0.576566406596513
Merged-chr5-139449292-4	chr5	139449207	139449407	+	875.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	11227.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	4.20084745258698	3.75154132111198	4.20147937947455	4.63094008461505	4.24306542756731	4.27993967186874	4.27255314914753	4.4901157325065	0.170002953563712	0.708768045306267	0.88307290901394
Merged-chr12-105010581-3	chr12	105010466	105010666	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172500)	promoter-TSS (NM_172500)	-757.0	NM_172500	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	3.59888500364169	3.79501716160569	3.59942039882518	3.41930172456711	3.34020564230889	3.31048527241466	3.25264891979895	3.19685245893167	-1.15147418630571	0.0323032048004296	0.17594963379934
Merged-chr3-79158421-4	chr3	79158338	79158538	+	978.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-12563.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	5.95904966469588	6.24921853333523	6.04336676671779	5.68488277976281	5.02393021965545	6.19756742272589	5.97147336950892	5.58372458607159	-0.379640945757785	0.265363801699908	0.577001515467012
Merged-chr5-64322566-2	chr5	64322500	64322700	+	742.875	f0_balb.idr|f1_balb.idr	intron (NM_001289514, intron 13 of 18)	Lx7|LINE|L1	92243.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	3.56129568202552	3.55358775321398	3.6130984855313	4.21468597863878	2.95879786814518	3.09494077196857	3.1239435247392	3.50639759972872	-2.15237463687587	0.000677627356818463	0.00985751842039268
Merged-chr10-26576381-3	chr10	26576281	26576481	+	902.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98270.0	NR_033633	667572.0	Mm.482728	NR_033633	ENSMUSG00000098179	Gm8709	EG667572	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	2.90140938026008	2.82908990747428	3.18167106592185	2.84675663780791	3.7028955345576	3.4201744539884	3.59338390089289	3.51378881533775	2.38968897274732	2.27288937304669e-05	0.000570257288276667
Merged-chr3-68981012-4	chr3	68980900	68981100	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026641, intron 5 of 19)	RSINE1|SINE|B4	23570.0	NM_026641	68259.0	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	5.94285568570242	6.0110872671443	5.48396012044611	6.24009100943404	5.65203710346032	5.31919664564025	6.12805881675959	5.62522569610167	-0.395851354758209	0.205311360334971	0.508859472252119
Merged-chr7-109479252-3	chr7	109479152	109479352	+	760.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170913, intron 7 of 19)	intron (NM_001170913, intron 7 of 19)	14486.0	NM_001170913	330627.0	Mm.183528	NM_181853	ENSMUSG00000031026	Trim66	Kiaa0298-hp|Tif1d	tripartite motif-containing 66	protein-coding	3.73530180425029	3.54421319436612	3.40011367123987	3.78710121462223	3.32735077051585	3.63872902945303	4.0209824435623	3.5767528785976	0.0930382654976002	0.859934025308967	0.947071700254788
Merged-chr4-62369340-3	chr4	62369230	62369430	+	754.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175090, intron 1 of 4)	intron (NM_175090, intron 1 of 4)	8629.0	NM_175090	20529.0	Mm.248637	NM_175090	ENSMUSG00000066150	Slc31a1	4930445G01Rik|AI787263|AU016967|Ctr1	solute carrier family 31, member 1	protein-coding	3.79943621662218	3.4136316017407	3.64456093497939	3.72103771943546	3.92001539333186	3.64564076123995	3.7838909071762	3.84552819153947	0.455312265119573	0.333015803845249	0.643946257670112
Merged-chr13-95960922-8	chr13	95960813	95961013	+	818.144043	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029210, exon 13 of 13)	3' UTR (NM_029210, exon 13 of 13)	-68991.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.62315652146674	3.39113409976997	3.67382454790514	3.30947696928134	3.63720058943576	3.57584246961071	3.55707216146388	3.56946424690441	0.304249884466621	0.539131176379261	0.791983989773924
Merged-chr9-85569053-4	chr9	85568974	85569174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	180260.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	6.53751631086117	6.40410519615709	6.50556322098966	6.82439187967349	6.33639052107675	6.48346285816064	6.70054214026822	6.71593218264649	-0.0439517977537792	0.849054035351562	0.94300165683632
Merged-chr14-20829975-4	chr14	20829872	20830072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6690.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	6.71522057428921	6.62622665386092	6.4245204842452	6.42957199200635	6.82728874943326	7.07930379883872	6.4096748797349	6.59023534862931	0.290366275050352	0.214992940863152	0.521004727057943
Merged-chr9-21526596-2	chr9	21526496	21526696	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198794, intron 1 of 6)	intron (NM_001198794, intron 1 of 6)	419.0	NM_206536	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	3.7491992951183	3.98795831923355	4.08639855023774	3.81840301350875	3.74040729298092	3.92362533660119	3.83929531424679	3.85299432130908	-0.215991642689713	0.62712863644318	0.841002239063709
Merged-chr2-6740164-4	chr2	6740052	6740252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-18490.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	6.6587131174247	6.7066959730749	6.83505127005846	7.06887608569498	6.71334711732558	6.75636306095172	7.0004888122218	6.60729589927321	-0.0925328492462015	0.671657095525048	0.864905117611895
Merged-chr19-45585042-3	chr19	45584940	45585140	+	929.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 6 of 8)	intron (NM_013907, intron 6 of 8)	24455.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	3.92514421279963	3.90392843090702	3.76413532969629	4.13082680183494	4.10380916807277	3.76325445049959	4.43362685105452	3.81813495577683	0.300477624977177	0.522409987596941	0.781971587334536
Merged-chr8-70353354-4	chr8	70353243	70353443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122829)	promoter-TSS (NM_001122829)	-64.0	NM_001122829	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	7.38457861302641	7.6137680659182	6.72008676339264	7.11715565112295	7.63221246473435	7.72138875802952	7.39770177522904	7.51263105109741	0.428946308469185	0.0615479427170211	0.262519236256882
Merged-chr12-76551505-3	chr12	76551409	76551609	+	948.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	-3584.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	4.21393600961046	4.43842340902777	3.97346741571272	3.91230321340445	4.1956277180562	3.73235122804271	4.05786944644956	4.55548334979154	0.0592825098719414	0.899470099861428	0.962569456167014
Merged-chr1-156996657-4	chr1	156996556	156996756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57030.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	6.29613742273761	6.19482894705805	6.25944889079299	6.36060636109404	6.30350362010105	6.37677913126365	6.53098610562976	6.19610784652302	0.105719793540991	0.63422033973314	0.845095562869841
Merged-chr1-179645888-4	chr1	179645780	179645980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-22351.0	NM_178653	109232.0	Mm.136458	NM_178653	ENSMUSG00000038936	Sccpdh	AW214504|C330023F11Rik	saccharopine dehydrogenase (putative)	protein-coding	5.69359400423607	5.81750322252842	5.72007319538022	6.09716521450979	5.38882671780609	5.70731148504768	5.85532317173766	5.83615215299794	-0.26267237962073	0.346623748417343	0.654820632427359
Merged-chr3-109451633-4	chr3	109451529	109451729	+	963.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	110946.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	5.70369633169958	5.41245969370685	5.58540003931866	5.99541683569774	5.1670138605641	5.13180502262907	5.3403711677582	4.81746243609086	-1.02494901114407	0.00117492283221931	0.0153140143333709
Merged-chr7-25084821-4	chr7	25084701	25084901	+	754.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7994.0	NM_175477	232976.0	Mm.41568	NM_175477	ENSMUSG00000045252	Zfp574	A630056B21Rik|Znf574	zinc finger protein 574	protein-coding	3.69154356590831	4.41200899871313	4.07005775452978	3.95358068331702	4.18948093749357	3.93240943275399	4.05241810259874	4.1135790858498	0.057346209183716	0.899011713166303	0.962375626232471
Merged-chr2-159591779-8	chr2	159591668	159591868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-355573.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	4.56530166158536	4.89799380864708	5.0371558204869	5.07797052055516	5.27541853380501	4.95961832852414	4.87506438199162	5.09771973821407	0.286928388112864	0.396226292496919	0.695104735895268
Merged-chr16-91734965-4	chr16	91734861	91735061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	Lx8|LINE|L1	5590.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	5.83083119625655	5.74208573830638	5.42885906648439	5.7934192595735	5.20339898352443	4.78141030839807	5.7802772029229	5.69134046951521	-0.491961501053441	0.147950442925822	0.429416915322518
Merged-chr13-30745292-5	chr13	30745170	30745370	+	801.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3963.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	3.36276887708029	2.9772192465393	3.36329051879669	2.74447491945769	3.01311130624042	3.37350270032432	3.00633078764973	3.07957852132067	-0.032110096804109	0.959393571614883	0.985513818852278
Merged-chr3-27317047-4	chr3	27316934	27317134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009425)	promoter-TSS (NM_009425)	-43.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	6.59474549120243	6.60052738050341	6.21276530796405	6.76836388045304	6.68964504029309	6.67425466766309	6.75085660771757	6.44105904062558	0.102233882181755	0.653388125261294	0.854997557892684
Merged-chr16-4782683-4	chr16	4782592	4782792	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358082, intron 1 of 5)	intron (NM_001358082, intron 1 of 5)	6770.0	NM_001358078	66626.0	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	5.60905909397129	5.46082016803323	5.53160662541083	5.46959116474139	5.89478801984149	5.50360868988982	5.33195965751069	5.25860324811095	0.0427335738398838	0.885583619331088	0.957045685546015
Merged-chr16-49781818-4	chr16	49781725	49781925	+	962.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73829.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	5.24050980148095	4.94252039751269	5.63936665013274	5.6228314664017	5.02527567365562	4.93808165509389	5.2759166558917	5.35672289282875	-0.44369354467006	0.18604007740909	0.483993006368217
Merged-chr4-136202602-2	chr4	136202502	136202702	+	934.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3763.0	NM_001008232	230837.0	Mm.77788	NM_001008232	ENSMUSG00000036995	Asap3	9430088F20Rik|Ddefl1|Gm140|UPLC1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	protein-coding	3.04422779345899	2.72657381606618	2.81988202532603	2.66997337355712	2.7719622227972	2.72597543868633	2.7476817810927	2.75561502837173	-0.301469969431781	0.636933297611833	0.846506358316041
Merged-chr3-95930202-4	chr3	95930123	95930323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253758, intron 1 of 4)	CpG	966.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	5.43320106291056	5.57098762956764	5.51788135195228	5.27546702853875	5.29660796594474	5.71796963316879	5.54263580612338	5.45885002967913	0.104655663790716	0.712617972663901	0.88495186291337
Merged-chr4-63396914-3	chr4	63396828	63397028	+	915.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 2 of 21)	intron (NM_001045514, intron 2 of 21)	1312.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	3.43911155849734	3.16658659800892	3.17827017912056	3.34678112286173	2.98041135571756	3.03038315008399	2.98217969595275	3.17661376564183	-0.994430134983185	0.0841285525817134	0.315449941748605
Merged-chr10-122047834-4	chr10	122047733	122047933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242411)	promoter-TSS (NM_001242411)	-518.0	NM_001081037	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	5.13840389982647	5.30361814895555	5.48232640144103	5.43127736728417	5.52338893465268	5.44936823732355	5.80652896793908	5.53235397644847	0.405758214464114	0.150779509594084	0.433682252935599
Merged-chr10-20919808-4	chr10	20919709	20919909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B2|LTR|ERVK	-32738.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	5.90632530542453	5.81164019669593	6.26911986217678	6.32707964421195	5.8714929730453	5.51347280415849	6.0896591126184	6.13614717690559	-0.284802787105079	0.309305230534111	0.621622697166796
Merged-chr2-38286113-4	chr2	38286017	38286217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 1 of 21)	intron (NM_146122, intron 1 of 21)	1267.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	6.82517644871019	7.07722332507214	7.48654386772079	6.7948162279559	6.78316903790165	6.50409246712363	6.42722366598913	6.5786159349446	-0.679506914918904	0.00519689749811608	0.0488975501676674
Merged-chr5-113918882-4	chr5	113918780	113918980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10174.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	6.93916743449673	7.11692440901224	6.78997840255839	6.87094401295972	6.96347426419766	6.89243550311977	6.94319510598964	6.8693730177949	-0.0193346127201524	0.920839701733694	0.970640619747695
Merged-chr9-57723383-4	chr9	57723291	57723491	+	686.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153799, intron 3 of 6)	intron (NM_153799, intron 3 of 6)	14822.0	NM_153799	353190.0	Mm.268104	NM_153799	ENSMUSG00000038957	Edc3	AA517853|Lsm16|Yjdc	enhancer of mRNA decapping 3	protein-coding	4.34869819797461	3.85100618688482	3.85277952451443	3.95161494200871	4.06634191764343	4.02928982472502	3.83760442895475	4.30867813459008	0.157019409040244	0.724914413447828	0.890538358585509
Merged-chr12-3238774-6	chr12	3238648	3238848	+	926.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015551, intron 4 of 6)	intron (NR_015551, intron 4 of 6)	2957.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	3.70112169336579	3.97865622177383	3.64502405186647	3.51671238472626	4.08084761740067	4.02831389920836	3.79215397370454	3.69959780768456	0.579379752019845	0.218972032565255	0.526365550165893
Merged-chr16-65470781-4	chr16	65470703	65470903	+	973.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-49826.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	5.03935604693183	4.89569353489788	4.68304544471355	5.11399883715246	4.61927636860124	4.7304926226401	4.81518784689546	4.97321790235449	-0.350527747153454	0.304307804444728	0.616977638512856
Merged-chr11-78600230-4	chr11	78600125	78600325	+	850.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008702, intron 3 of 10)	intron (NM_008702, intron 3 of 10)	-49490.0	NM_133706	69071.0	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	4.06164399678477	4.26997356774563	4.67399399320685	4.31806637948793	4.4745252398934	4.13311018027772	4.19209644841139	4.05990385371849	-0.269778097391991	0.523469498883376	0.782507755382099
Merged-chr8-40961916-4	chr8	40961803	40962003	+	983.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026840, intron 2 of 5)	intron (NM_026840, intron 2 of 5)	35670.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	5.43413070461503	5.13226610876335	5.26519550554345	5.42134027517771	5.13844812678856	5.09778718285474	5.26889508157252	5.16731152810401	-0.287777120728871	0.327953817107387	0.639295721503993
Merged-chr11-61175255-4	chr11	61175154	61175354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004143)	promoter-TSS (NM_001004143)	-195.0	NM_001004143	216825.0	Mm.30602	NM_001004143	ENSMUSG00000042506	Usp22	AI427806	ubiquitin specific peptidase 22	protein-coding	9.25657851804771	9.52826077229803	9.24281311812589	9.15607899150153	9.29895505672456	9.68932228497558	9.34622712406575	9.27621365533297	0.134926124669709	0.418728581979433	0.712053868847791
Merged-chr1-149959954-4	chr1	149959882	149960082	+	898.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	1308.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	3.44106109762285	3.59394396048802	3.70121785340535	3.64757300188214	3.56611581579101	3.29972490176366	3.68507012991416	3.18727474524181	-0.48066110595582	0.364247028121417	0.669180756108155
Merged-chr10-19934250-2	chr10	19934150	19934350	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008580)	promoter-TSS (NM_008580)	-276.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	5.52855569765511	5.41364905676468	5.11350508457776	5.04987597360226	4.96985905235963	4.95730423142909	4.95089465089705	5.00746287703418	-0.586812508719141	0.0666947185284005	0.275315395820508
Merged-chr17-7925906-4	chr17	7925800	7926000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145968)	promoter-TSS (NM_145968)	-100.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	7.15697173004027	7.42559963236054	6.99745679632363	7.28287101713098	7.44849599269299	7.36955039859829	7.18985747342378	7.19877110286284	0.106420729305145	0.584054464641389	0.817501676178582
Merged-chr12-91789480-3	chr12	91789377	91789577	+	904.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3041.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	3.90074706397532	4.1177081359892	3.69078009522255	4.09983519772042	3.7378847457003	3.68811491365028	3.97730359395864	3.74466621658746	-0.521721881654667	0.258682805811201	0.570489393947544
Merged-chr2-164520964-4	chr2	164520854	164521054	+	918.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23429.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	5.26119121130282	5.30792751583273	4.84274852059896	4.88790588501524	4.43348856158154	4.63004741485123	4.81962679929538	5.33798544602302	-0.474460270954038	0.221145208955347	0.529212440432782
Merged-chr9-99009170-3	chr9	99008998	99009198	+	839.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080776, intron 7 of 7)	ID2|SINE|ID	22725.0	NM_001122851	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	2.29378027725843	2.7528700046259	2.37210418380994	2.54519846524869	2.50028862644469	2.75261563459739	2.63650662450991	2.70520518744295	0.730359670640273	0.316235489936515	0.628155548869543
Merged-chr18-12132900-4	chr18	12132761	12132961	+	951.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024182, intron 1 of 12)	intron (NM_024182, intron 1 of 12)	4011.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	4.45608016660019	4.61488517936727	4.99605707048508	4.7666890459174	5.16713676304013	4.48880243648696	4.80526599422265	4.89484940161046	0.306873984909906	0.408260015117686	0.704278459447095
Merged-chr19-34879098-6	chr19	34878969	34879169	+	910.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001114339, exon 1 of 7)	exon (NM_001114339, exon 1 of 7)	386.0	NM_001114339	75735.0	Mm.24742	NM_023792	ENSMUSG00000033610	Pank1	Pank|Pank1b	pantothenate kinase 1	protein-coding	4.35976714235851	4.022049002473	4.5109091778637	4.32080505191767	4.29505556821329	4.16342893141971	4.02449283685366	4.18467123593394	-0.340009490824774	0.406332396162925	0.702851363948501
Merged-chr10-61695486-4	chr10	61695408	61695608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001272090)	promoter-TSS (NM_001272090)	-6.0	NM_001272090	71767.0	Mm.71514	NM_027912	ENSMUSG00000020087	Tysnd1	1300019N10Rik	trypsin domain containing 1	protein-coding	7.9497926998666	8.00647191464701	7.41421584602501	7.91251083580597	8.01172513736672	8.11466632437456	7.99318115530209	7.82209703767557	0.185582798195581	0.331506673981068	0.642608063609417
Merged-chr13-24757982-4	chr13	24757887	24758087	+	932.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020567, intron 2 of 6)	intron (NM_020567, intron 2 of 6)	3950.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	4.84386242324981	4.71786326536624	4.53940105894948	4.47713231017825	4.68919951586935	4.6271886316526	4.78712627581525	4.73544766852601	0.152752980880134	0.660268133861587	0.858757569392328
Merged-chr8-123653795-4	chr8	123653690	123653890	+	773.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133955)	promoter-TSS (NM_133955)	-139.0	NM_133955	69581.0	Mm.168257	NM_133955	ENSMUSG00000039960	Rhou	2310026M05Rik|AI182090|Arhu|CDC42L1|G28K|WRCH-1|WRCH1|mG28K	ras homolog family member U	protein-coding	4.3303023483823	4.03369583573575	4.01991941725517	3.85912308017148	4.16675957909642	3.92293581181199	4.18830689705811	4.47341883817044	0.375259234889834	0.386063073945018	0.687436422182729
Merged-chr17-10328598-4	chr17	10328565	10328765	+	981.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045461, intron 2 of 2)	intron (NR_045461, intron 2 of 2)	4063.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	4.04586107754036	3.87974554343915	4.04648866344102	3.89317917428808	3.95141724322993	3.63082915599635	3.8431451627105	3.7518483556541	-0.439885225912046	0.327981290599744	0.639319210307787
Merged-chr12-85362675-3	chr12	85362574	85362774	+	847.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 1 of 4)	L1MC3|LINE|L1	12043.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	4.24136252867929	4.62131264970749	4.1975137378974	4.599228515934	4.07910441131915	3.76347430642911	3.87776368262857	4.05157595302515	-1.23978446706373	0.00475969162923757	0.0458257933825918
Merged-chr16-35870378-9	chr16	35870279	35870479	+	819.4259030000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039530, intron 1 of 16)	intron (NM_001039530, intron 1 of 16)	1003.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	3.38460668794161	3.52514284404356	3.2688576696477	3.16753021446953	3.65716435423522	3.31844715909458	3.13168704265676	3.4375212544503	0.247537959563064	0.653183214763752	0.854997557892684
Merged-chr14-64658537-4	chr14	64658448	64658648	+	985.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 1 of 39)	intron (NM_001081177, intron 1 of 39)	6017.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	4.7541550077841	4.88863729741192	4.86671333925061	4.70565312064824	4.87788440555702	4.89004221453449	4.91224076683714	4.86346383293119	0.178992389406743	0.576840832675201	0.813789860645106
Merged-chr5-120500275-4	chr5	120500176	120500376	+	994.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023625, intron 1 of 11)	intron (NM_023625, intron 1 of 11)	3347.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	4.86293069473192	5.06651628493583	5.34049797160269	5.14417847448743	5.55110875897463	4.91712581621366	5.25603683247863	5.56913577698053	0.444186751391599	0.172546056397132	0.466043932314783
Merged-chr13-55429478-4	chr13	55429378	55429578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2674.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	7.89625194133871	8.26467466679773	8.02438458039825	7.96398010541575	8.10958286631798	8.02165924064072	8.14317356813388	8.15257389562991	0.0822027182233483	0.620203926442378	0.837084318577183
Merged-chr12-91877788-3	chr12	91877676	91877876	+	741.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28619.0	NM_011344	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	3.46651733661316	3.49146915914554	3.68047551743149	3.48799758183116	4.01023297332193	3.39381462861944	3.20266797227913	3.6782727462279	0.275293395019834	0.617912937369202	0.835754664405474
Merged-chr18-36491763-4	chr18	36491641	36491841	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24064.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	5.37512866805112	5.57917506603818	6.04187728534398	6.16593177805485	5.91133491022706	5.23203819101115	5.63622738872949	5.60817404621693	-0.352147743372589	0.278081739168761	0.590218872623249
Merged-chr4-136053047-2	chr4	136052947	136053147	+	878.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025919, intron 1 of 5)	CpG	324.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	4.44021473087427	4.48869102744086	4.73277219524763	4.19779612595741	5.02307270855179	5.07703566465482	4.63391599476325	4.72959835072964	0.902323597983554	0.0141505220361191	0.100711929607932
Merged-chr4-150031526-5	chr4	150031560	150031760	+	699.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22637.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	2.78819034095641	2.89143315140619	2.90595272009807	2.62769746553556	2.80849121271701	2.83187524488138	2.58269897257068	2.51549856006608	-0.520802479024259	0.439340309639904	0.727224328838519
Merged-chr11-51756564-4	chr11	51756470	51756670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175255, exon 1 of 23)	5' UTR (NM_175255, exon 1 of 23)	264.0	NM_001290785	77371.0	Mm.33878	NM_175255	ENSMUSG00000036391	Sec24a	-	Sec24 related gene family, member A (S. cerevisiae)	protein-coding	8.44575990192313	8.73002523416975	8.19547298399275	8.11138661291892	8.27275497991811	8.36081583128319	8.26116942528234	7.96709081760238	-0.214053125533133	0.277852993841673	0.589858344900601
Merged-chr15-59887978-4	chr15	59887787	59887987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92928.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	5.29704958819433	5.59894888591125	4.99835186896747	5.29015004012743	5.17216489762951	5.31539444343879	4.97458365928849	5.32356769255516	-0.211388844506997	0.49859813463438	0.767743621017188
Merged-chr9-119067808-3	chr9	119067708	119067908	+	894.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011700, intron 15 of 18)	intron (NM_011700, intron 15 of 18)	15030.0	NM_001164567	22351.0	Mm.83817	NM_011700	ENSMUSG00000038775	Vill	Villp	villin-like	protein-coding	3.16713394334244	3.4037862421971	3.34396569466093	3.36153772153494	3.34049819650591	3.27738043703678	3.2177550363498	3.34216354458654	-0.104379869971906	0.842578308727379	0.940251336238462
Merged-chr14-66873495-4	chr14	66873360	66873560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4610.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	5.31851948625047	5.07264925624635	5.23312813401418	4.69822212548354	5.24690479198831	5.14517022231733	5.08298168369946	5.10448611984262	0.133460141863469	0.686228736604843	0.871787672169905
Merged-chr3-98066647-4	chr3	98066561	98066761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	B3|SINE|B2	53123.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	6.27520657530672	6.31808685601473	6.34614519712771	6.5269792036214	5.6351510812499	5.84540748227291	5.82386735838478	6.05709891159389	-0.842777365429011	0.000528288069574588	0.00806760227103496
Merged-chr15-12014275-4	chr15	12014178	12014378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	-18271.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	6.02615642275962	6.53664198119531	6.09243196054825	6.1869755973827	6.16676050526956	6.13573738190309	6.21946413333527	6.12973113911923	-0.10037558199059	0.676209188448063	0.867069478563613
Merged-chr14-72603038-4	chr14	72602909	72603109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	106994.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	6.68456415159054	6.8005139810686	6.6554908048465	6.62498632563752	6.7786140485973	6.56096853655728	6.5431655198352	6.79501218328579	-0.0133370598036308	0.948201875824953	0.981388084353081
Merged-chr10-37335310-4	chr10	37335183	37335383	+	627.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-196357.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	3.59367168981067	3.41435047950112	3.78983099427785	3.64692849189686	3.77828064332058	3.59890992026576	3.2882969991309	3.48198235144902	-0.190869335306343	0.710763774466876	0.884203816607274
Merged-chr1-172526823-3	chr1	172526724	172526924	+	832.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027972, intron 1 of 11)	MLT1N2|LTR|ERVL-MaLR	5694.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	3.13962048096398	3.17105403143783	3.13997457419111	2.75467430288418	3.52373605465564	4.05920923772403	4.14022446113877	3.96896240174692	3.17321792965565	2.50925713028224e-08	1.22665207514411e-06
Merged-chr19-31950985-4	chr19	31950887	31951087	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82226.0	NM_001081074	69865.0	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	4.29672077486789	4.44380574539514	4.78955608323865	5.0878429105664	4.77926368185197	4.26636675520668	4.62369333648593	4.34369509469871	-0.388123513965497	0.36016788197213	0.66568674445473
Merged-chr2-71526883-3	chr2	71526770	71526970	+	750.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-2575.0	NM_010053	13390.0	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	3.65780065625452	3.42217169403268	3.13797747693414	3.41607383652464	3.38002276592806	3.77721250692237	3.3231901591244	3.50485607976855	0.279006610451029	0.60271202249465	0.82781026260317
Merged-chr17-26561467-4	chr17	26561351	26561551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026170)	promoter-TSS (NM_026170)	-61.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	6.62201645315386	6.71314799408056	6.63914956062007	6.80670281840605	6.95722122976349	6.59232422720818	7.06319676115793	6.82531061867331	0.2419295583035	0.247574617384479	0.558775840784152
Merged-chr18-74208334-4	chr18	74208222	74208422	+	862.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164355)	promoter-TSS (NM_001164355)	-504.0	NM_025581	66468.0	Mm.283406	NM_025581	ENSMUSG00000036223	Ska1	2810433K01Rik|AV117428	spindle and kinetochore associated complex subunit 1	protein-coding	5.45041068163062	4.66852571502602	5.3167696671819	5.2754664693904	5.25567558471094	5.17141021452447	5.26160634805132	4.91626296804126	-0.0872361901092234	0.796742075255459	0.92135824726854
Merged-chr13-67278531-3	chr13	67278426	67278626	+	900.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033540)	promoter-TSS (NR_033540)	-68.0	NR_033540	100038627.0	Mm.387089	NR_033540	ENSMUSG00000114442	F630042J09Rik	-	RIKEN cDNA F630042J09 gene	ncRNA	3.61602963162516	3.93119210700207	3.66785161563405	4.21045922767307	3.006840860573	3.37433017534699	3.10602881349628	3.32338771794302	-2.52712075126795	3.29808047619746e-05	0.000787765336292816
Merged-chr14-93199948-3	chr14	93199857	93200057	+	760.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271800, intron 3 of 3)	MIR|SINE|MIR	690712.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	3.5500252712293	3.68375124251387	3.77963751735111	3.84795984136591	2.94887135870458	2.94771116260364	2.91177316813106	3.26932711860556	-2.92623502273034	1.13896494166965e-05	0.000309783666729477
Merged-chr16-92398076-6	chr16	92398026	92398226	+	924.9722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	1952.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	4.09327478829969	4.12110289449806	4.05200196532004	3.64727785669409	3.76214991701898	3.77423314975417	3.52125553994421	3.59370508377402	-0.920158084583605	0.0606212285552885	0.260125297042252
Merged-chr8-77483880-4	chr8	77483762	77483962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-33194.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	7.45787661919212	7.15263394162082	7.62721654246249	7.87535612287321	7.34288864610635	7.37449217928648	7.45023054593428	7.28177537507071	-0.269907422848846	0.201308770506156	0.503618619986563
Merged-chr5-115160921-3	chr5	115160830	115161030	+	881.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-2754.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	3.54097385224749	3.37229988749876	3.9715859439783	3.89643869200452	3.45232591484323	3.8203880499565	3.528391693931	3.64910302609285	-0.343292832116215	0.510354151830681	0.774681535183884
Merged-chr8-126583818-2	chr8	126583718	126583918	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9618.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	4.43262547268203	4.6722898486057	4.6838900144628	5.00758902080984	4.74570454661676	4.2508112295289	4.69891516780495	4.68081663471988	-0.2523116074337	0.512203089228068	0.775701492755237
Merged-chr19-46502947-4	chr19	46502838	46503038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_053100, exon 1 of 6)	exon (NM_053100, exon 1 of 6)	1290.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	5.62585503649784	5.26706749581088	5.29287880477727	5.20648558409918	5.72907219795167	5.1108317803915	5.73594410460992	5.49436117499285	0.355051611328018	0.245539641516753	0.556654016100933
Merged-chr9-64172907-4	chr9	64172774	64172974	+	951.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026507)	promoter-TSS (NM_026507)	57.0	NM_026507	68014.0	Mm.335237	NM_026507	ENSMUSG00000032400	Zwilch	2310031L18Rik	zwilch kinetochore protein	protein-coding	4.50851937666466	4.81788048861865	4.67822295876936	4.12117617083197	5.0295235033843	4.9998585146371	4.53273275559909	4.95784389459629	0.745773842340284	0.0536501936300385	0.241777780687879
Merged-chr1-74053290-4	chr1	74053200	74053400	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289895, intron 3 of 32)	intron (NM_001289895, intron 3 of 32)	71147.0	NM_027884	21961.0	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	4.47433107812223	4.63971570067486	4.64248543801125	4.60950939915811	4.74353900456312	4.24627424008291	4.9885580709276	4.78728400112197	0.273765357644106	0.460609610483245	0.742687499720882
Merged-chr18-62186632-4	chr18	62186516	62186716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	6516.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	5.61389716349278	5.66418612861697	5.71239588680174	5.58332946839898	5.29740525935299	5.56951853770859	5.17337746284431	5.53252928369777	-0.422643469835728	0.126434772312965	0.395269705659896
Merged-chr2-122166345-2	chr2	122166241	122166441	+	886.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_080510, intron 1 of 6)	L1Md_F2|LINE|L1	5641.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	2.5405821086736	2.47992839419179	2.8280418356336	2.29458693973638	2.97637851803804	3.00526624133841	3.24853720071347	2.95008504091619	2.57839921880352	0.000292356991756241	0.0049665103379994
Merged-chr10-128194364-4	chr10	128194264	128194464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285779)	promoter-TSS (NM_001285779)	-271.0	NM_001285777	216456.0	Mm.30102	NM_001033264	ENSMUSG00000044005	Gls2	A330074B06Rik|AI195532|GA|GLS|Lga	glutaminase 2 (liver, mitochondrial)	protein-coding	6.67994274861093	6.99728984171888	6.23517852039409	6.81779851077447	6.8958973422891	6.85870741070396	7.27250144526172	7.15286747739256	0.465979015543602	0.0511186761994298	0.234638017733481
Merged-chr8-46889914-3	chr8	46889795	46889995	+	934.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96992.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	3.64941865732231	3.72867801364399	3.75188265451197	3.98146271780671	3.30808180978276	3.59588695400908	3.40680643364818	3.79763261028655	-0.820414084436291	0.107642186574652	0.361784077731473
Merged-chr9-121331634-2	chr9	121331534	121331734	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	L1M4|LINE|L1	34132.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	2.93365391416956	2.72671643061978	2.81845192658493	2.82444616834838	2.92640488963343	2.65276887361585	2.61583159105025	2.75518535258799	-0.355818794260573	0.582577419588613	0.81668109351953
Merged-chr16-33756188-4	chr16	33756091	33756291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 12 of 14)	intron (NM_175256, intron 12 of 14)	-37846.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	6.8720189814398	7.26861891923661	7.23103400189437	7.25565790498603	7.17256539646435	7.27195499055052	7.10621202605446	7.09010596803927	-0.0174728696676301	0.927987461580437	0.973819745652065
Merged-chr6-72552892-4	chr6	72552784	72552984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271395, intron 1 of 9)	intron (NM_001271395, intron 1 of 9)	3237.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	8.10951678525539	8.12866209748428	8.35645084764871	7.99105658187183	7.97365160313756	7.98244677272398	7.82827404801594	7.4044102944329	-0.423686669723251	0.0296318510668461	0.165854016441538
Merged-chr15-53157465-3	chr15	53157368	53157568	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	188715.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	4.65679767089738	4.92566296351185	4.95718738338547	5.03924430404968	4.55806426806356	4.28970887106081	3.96984928185408	3.85310311519474	-1.57029513561208	0.000364330554766044	0.00594513630391844
Merged-chr5-50058319-3	chr5	50058230	50058430	+	878.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133911, intron 1 of 18)	CpG	666.0	NM_133911	70693.0	Mm.272974	NM_133911	ENSMUSG00000029090	Adgra3	3830613O22Rik|AU044632|Gpr125|Tem5-like	adhesion G protein-coupled receptor A3	protein-coding	3.80580050169851	3.64813285303348	3.80639594861155	3.57175060043521	3.18331918570621	3.42092101791505	3.35971586098473	3.93515697429886	-0.651747443268879	0.232994183936513	0.542573219211445
Merged-chr1-54438963-4	chr1	54438860	54439060	+	983.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033194)	promoter-TSS (NM_001033194)	66.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	4.51613765401786	4.71246320492239	4.74583319143428	4.60131576641152	4.61260610315565	4.46702736208116	4.72296777936995	4.12825163485966	-0.304766396055539	0.419595086774989	0.712698866070656
Merged-chr15-81106398-4	chr15	81106291	81106491	+	892.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	-1344.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	4.56481539939534	4.25555125089471	4.93088537299727	4.97815969884214	4.58624270869454	4.05902667289141	4.03572179176325	4.10525648709616	-1.11866276648337	0.0133216770669106	0.0966687380921224
Merged-chr5-35728506-4	chr5	35728429	35728629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359895, intron 1 of 17)	intron (NM_001359895, intron 1 of 17)	747.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	5.29787742733911	5.5797808973195	5.97101677789797	6.17308615960561	5.99392667774133	5.74349399416494	6.15854690598416	6.46341128185339	0.472348799375937	0.137026554358318	0.411631144560059
Merged-chr14-31392983-4	chr14	31392882	31393082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	24695.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	8.15099725690327	8.0836691423875	8.04618496646229	8.19445983018092	7.92944831928545	7.79236756048655	7.80336918784728	7.95310924544718	-0.321533377991183	0.0421516392141254	0.208152596615945
Merged-chr5-30516573-4	chr5	30516478	30516678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028483, intron 3 of 6)	intron (NM_028483, intron 3 of 6)	29258.0	NM_028483	73259.0	Mm.443299	NM_028483	ENSMUSG00000053194	Cib4	1700041E20Rik	calcium and integrin binding family member 4	protein-coding	5.6519313329944	5.52572909133674	5.54533669245749	5.54411196530078	5.86038432797722	5.90172899788391	5.72284145075767	5.56918682244567	0.348329590288205	0.178139871740685	0.47385347507328
Merged-chr16-3699484-4	chr16	3699386	3699586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18638.0	NM_001161790	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	6.34023597414306	6.25404375023943	6.2834622447752	6.21433589010877	6.79841019337325	6.77224420163579	6.74780041898687	6.57645146994864	0.674790131031704	0.00111284763183051	0.0146443670893075
Merged-chr13-32866633-3	chr13	32866500	32866700	+	608.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15415.0	NM_025429	66222.0	Mm.20144	NM_025429	ENSMUSG00000044734	Serpinb1a	1190005M04Rik|AI325983|EI|EIA|ELANH2|LEI|M/NEI|MNEI|PI2	serine (or cysteine) peptidase inhibitor, clade B, member 1a	protein-coding	3.38724530015167	3.51589511042901	3.60918524738565	3.63414687867784	3.39670816596128	3.61862133794102	3.31476977713973	3.70476307717648	-0.104659179937487	0.836441207715533	0.937753764021861
Merged-chr11-96005852-2	chr11	96005752	96005952	+	921.7999880000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009951)	promoter-TSS (NM_009951)	92.0	NM_009951	140486.0	Mm.294769	NM_009951	ENSMUSG00000013415	Igf2bp1	AL024068|AW549074|CRD-BP|Crdbp|D030026A21Rik|D11Moh40e|D11Moh45|IMP-1|IMP1|Neilsen|ZBP-1|Zbp1|mir-3063	insulin-like growth factor 2 mRNA binding protein 1	protein-coding	3.38631888704241	3.21845711541498	3.44363812450098	3.31415988693342	3.77790805804874	3.37796137553127	3.31547240007119	3.69297897607371	0.752465885538365	0.148190147312515	0.429864964363742
Merged-chr11-118419063-4	chr11	118418935	118419135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001267592)	promoter-TSS (NM_001267592)	83.0	NM_001025617	76025.0	Mm.177551	NM_029502	ENSMUSG00000025575	Cant1	5830420C20Rik|Apy1h|D11Bwg0554e|Entpd8|SCAN-1|Shapy	calcium activated nucleotidase 1	protein-coding	8.0744543070937	8.1321412197869	7.66127632577481	7.50116308671872	8.150608964402	8.20846642382901	7.89777593525762	7.79694729536465	0.209439485625326	0.322822719729422	0.634284989924212
Merged-chr16-93031801-4	chr16	93031676	93031876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-205702.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	5.999235727735	5.85206099730551	5.88715102971435	6.04998931021564	5.81788227973601	5.9658035278446	6.23956845805945	6.17696977179698	0.15225780559763	0.540579034540913	0.792829019929487
Merged-chr1-170608842-3	chr1	170608762	170608962	+	912.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19013.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	3.68930386148154	3.30745563750536	3.58817808309425	3.66543748795186	3.74971378297186	3.70475937710883	3.46484799245219	3.35556518589665	0.0317869153949953	0.950552910035122	0.982307929721972
Merged-chr15-59648499-4	chr15	59648368	59648568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144549)	promoter-TSS (NM_144549)	-186.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	8.36629624190858	8.2477038526976	8.34638697906041	8.12527206463891	8.2650601105012	8.50200928607025	8.23579035692987	8.15023653889204	0.0309691329156026	0.850697588872945	0.943659570782293
Merged-chr8-88288950-4	chr8	88288860	88289060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037723)	promoter-TSS (NM_001037723)	-106.0	NM_001037723	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	5.01629520726543	5.332463184139	5.57017941117847	5.39445593832461	5.33958276892936	5.3047419257155	5.41185823946138	5.54112366620674	0.0950753395407652	0.745922730419003	0.899850054545454
Merged-chr10-70183396-3	chr10	70183288	70183488	+	677.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111121, intron 7 of 8)	intron (NM_001111121, intron 7 of 8)	-21276.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	3.99578406442761	3.47255262972463	3.45808363370633	3.61583683024676	3.35396864873103	3.18302707312821	3.32915025596805	3.2769485241689	-1.24845401026174	0.0232206350681701	0.141206457370122
Merged-chr7-47035158-4	chr7	47035065	47035265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15475.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	7.03711592386613	7.01338499534944	7.21095885211184	7.3208809298581	6.98343967828749	6.8465080947818	7.15323574094783	7.1283495498817	-0.174954015566775	0.376145086215734	0.678999545833222
Merged-chr4-150388769-3	chr4	150388677	150388877	+	852.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	106861.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	3.83725928879247	3.2517696847618	3.42091158265062	3.37668201839406	3.577039367107	3.71202648586633	3.52441506026047	3.87900333930145	0.618885480727418	0.230075920495542	0.539230636272226
Merged-chr16-5011414-4	chr16	5011315	5011515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133185, intron 5 of 10)	intron (NM_133185, intron 5 of 10)	2138.0	NM_133185	66049.0	Mm.27792	NM_133185	ENSMUSG00000022540	Rogdi	0610011C19Rik|AU020118|C76152|Lzf	rogdi homolog	protein-coding	5.5606263893715	5.41207134707195	5.58628330701443	5.12313579897928	5.53783992928041	5.26016071524888	5.16154770150347	5.11454961547333	-0.225162721406025	0.47134767606511	0.749827406573597
Merged-chr11-21421786-4	chr11	21421664	21421864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50497.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	5.27269944567156	5.19708898039807	5.18689468291992	5.33485906480816	4.66486177905252	4.33962736625359	5.03624952425983	5.12200967899471	-0.832769494301241	0.0181447771636366	0.119918950207102
Merged-chr5-122952348-3	chr5	122952241	122952441	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 6 of 22)	CpG	36758.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	3.69152232884086	3.36567074697113	3.12901373904388	3.55716323898453	3.33919770294646	3.55589089162483	3.31297075463835	3.54535925786743	-0.0566817764578443	0.916348711909811	0.96897753725177
Merged-chr1-66649990-8	chr1	66649905	66650105	+	937.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175510, intron 47 of 64)	intron (NM_175510, intron 47 of 64)	-50826.0	NM_025683	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	3.37938069573838	3.45189264810885	3.59389175061743	3.28282454406006	3.39678568117589	3.66042670288482	3.30847423115663	3.37805183603356	0.0565566314828586	0.912741318968816	0.967332931462455
Merged-chr3-142598105-4	chr3	142597992	142598192	+	833.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010259, intron 1 of 10)	intron (NM_010259, intron 1 of 10)	3245.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	3.62190821299983	3.44371726180229	3.89766221424654	3.56806991964456	4.05735969934641	3.96985364914582	4.10529571426618	4.24074442813943	1.30626309037214	0.00366522421606073	0.0373763602399694
Merged-chr1-184480829-4	chr1	184480738	184480938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76853.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	6.26405794719365	5.39131650721276	5.99676288188722	6.40876853532402	5.74771936900766	5.7483166710715	6.00782273604334	5.90397366513232	-0.357856128101635	0.242145559883612	0.552815408523819
Merged-chr10-80503734-2	chr10	80503634	80503834	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139226, intron 1 of 1)	intron (NM_139226, intron 1 of 1)	8828.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	3.31654903902514	3.1495470533942	3.3711294920906	3.24410411446477	3.44982527473272	3.31235067803078	3.24838555326803	3.07312810977988	0.0552084838810047	0.91902138021373	0.970261388641844
Merged-chr8-80963280-2	chr8	80963162	80963362	+	602.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51644.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	3.12625395603655	3.05369270234892	3.01510595956917	3.30819121971821	2.71306035337115	2.71263707462576	2.67888469556714	3.01351498466712	-1.62835653519713	0.0141574685144828	0.100731152678166
Merged-chr4-46451576-4	chr4	46451464	46451664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130889, intron 1 of 6)	CpG	638.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	5.16980823859448	5.23076851869882	5.0691457019866	4.96603459367617	5.21559572240836	5.3124530439205	5.38111388140801	5.57818514294904	0.502340265574115	0.090367116735716	0.32831427455258
Merged-chr11-115634271-4	chr11	115634173	115634373	+	968.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5978.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	5.46641948278217	5.13748489549078	5.01092705017403	5.00149563102889	5.21212599977816	5.41776985696409	5.43963116704701	4.89306205242324	0.182556039182351	0.572061903654085	0.811072467668096
Merged-chr10-62231267-4	chr10	62231170	62231370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197996)	promoter-TSS (NM_197996)	-52.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	7.71234697947176	7.86635800632549	7.89985873390848	7.94509740806455	7.87640089192314	8.05551894524432	8.17765159880083	7.63079680851296	0.112662811660309	0.540960122502737	0.793009827469438
Merged-chr19-47228846-4	chr19	47228786	47228986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163480)	promoter-TSS (NM_001163480)	43.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	6.30686111409829	5.92398056874981	6.25594229010259	5.97521670612135	5.91850721965666	5.8884718527143	6.27554802418566	5.46730185690973	-0.309861569144531	0.268248050932217	0.580076430005696
Merged-chr2-70742775-4	chr2	70742662	70742862	+	636.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172664, intron 10 of 19)	L2b|LINE|L2	81253.0	NM_027352	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	3.84827784665546	3.61076198374113	3.79943216111287	4.08190160861009	3.89638825369235	3.63483774338739	3.62518681586153	3.84657248259653	-0.281735892223987	0.555953407442081	0.801730133825154
Merged-chr16-57424367-4	chr16	57424271	57424471	+	971.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	71094.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	5.09295898597779	4.96372952884965	5.57301448870481	5.52256673743622	5.61682163629582	5.19870385675455	5.49423351520264	5.49203946917384	0.247945605568992	0.434541447637041	0.7238182012175
Merged-chr4-45499418-4	chr4	45499334	45499534	+	883.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	31394.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	4.32120016585188	4.97247975437736	3.86516822489217	4.69255825795781	5.05033740649001	4.40225935653866	4.60180888012024	4.41271804909044	0.257979265849134	0.591051655056369	0.821418854067929
Merged-chr17-81538356-4	chr17	81538263	81538463	+	968.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	ORR1E|LTR|ERVL-MaLR	200024.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	4.75412196904633	4.72755673929722	4.98234436512784	5.16568725875692	5.01573975431675	4.9326816442091	5.46147680177456	4.94379327364207	0.330185106094413	0.340539562110212	0.649679556785898
Merged-chr6-37589751-4	chr6	37589658	37589858	+	950.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59585.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	4.49496013775786	4.663811470451	4.45328888236559	4.35284119958766	4.59334060421049	4.34543171547398	4.55525317130008	4.75420999310937	0.191376299941857	0.601575286058255	0.827133488921953
Merged-chr1-65536469-4	chr1	65536372	65536572	+	867.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	225215.0	NM_139270	213527.0	Mm.294225	NM_139270	ENSMUSG00000025946	Pth2r	Pthr2	parathyroid hormone 2 receptor	protein-coding	4.09861897182485	4.43639873835789	4.50052978209923	4.58174633602367	4.431911881071	3.79534624222063	4.62221565595312	4.19725249000166	-0.282936558808112	0.527395030499219	0.784361896301674
Merged-chr13-100602413-4	chr13	100602316	100602516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038602, intron 3 of 6)	intron (NM_001038602, intron 3 of 6)	14528.0	NM_178410	218518.0	Mm.25300	NM_178410	ENSMUSG00000021636	Marveld2	BC003296|MARVD2|Mrvldc2|Tric|Trica|Tricb|Tricc	MARVEL (membrane-associating) domain containing 2	protein-coding	6.98949695628763	6.53182869004297	6.43962169209233	6.9001703405925	6.59204858484374	6.58052889671144	6.73901245365262	6.69688310832725	-0.131367429945769	0.560704525488556	0.804677354323761
Merged-chr8-14851438-4	chr8	14851345	14851545	+	900.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37091.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	4.68048582381967	4.61449519494137	4.79348633405379	4.94021541327414	5.1340828665614	4.3452434610058	4.53761801683589	4.63851897242564	-0.110543222776584	0.777117593872901	0.913034573074491
Merged-chr1-164059529-3	chr1	164059427	164059627	+	723.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2549.0	NM_001164059	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	3.33654340096201	3.05189495843452	3.01415244572577	2.83090217571239	3.64517938549063	3.2673673601846	3.6690043392291	3.54622143199419	1.79969443066413	0.00143201182918626	0.017973755949506
Merged-chr2-155019456-3	chr2	155019373	155019573	+	890.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015770, intron 1 of 3)	ERVB4_1-I_MM-int|LTR|ERVK	5903.0	NM_015770	50518.0	Mm.315593	NM_015770	ENSMUSG00000027596	a	A<y>|ASIP|ASP|As	nonagouti	protein-coding	3.784245998895	3.68559060924739	3.67953646085036	3.71494407774455	4.07566160505022	3.68129754653687	3.7692219345611	3.78260785486126	0.385919228723574	0.398627537699295	0.696793179038619
Merged-chr6-97488610-3	chr6	97488520	97488720	+	871.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346637)	promoter-TSS (NM_001346637)	-800.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.77370032240178	3.62284237303682	3.513231275392	3.5434155095626	3.51873522629161	3.74169457465322	3.44177408569805	3.77196455480502	0.0297795976457464	0.951043621429928	0.982556219406068
Merged-chr10-24638137-4	chr10	24638032	24638232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008813, exon 25 of 25)	3' UTR (NM_008813, exon 25 of 25)	42690.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	5.27505372066142	5.40727167117119	5.76795869293704	6.04344636011083	5.28942775975238	5.42082295210044	5.59573179714616	5.51450393482058	-0.383072812816486	0.223443997040039	0.531514897079603
Merged-chr13-43790814-4	chr13	43790710	43790910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	5698.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	7.68082831529259	8.05606429717802	7.66532833630284	7.72355276370096	7.63402338667977	7.96342215582381	7.63625351281231	7.48823139251649	-0.134626279874263	0.484821698464413	0.758880279356098
Merged-chr10-128804481-4	chr10	128804359	128804559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178066)	promoter-TSS (NM_178066)	-12.0	NM_178066	73827.0	Mm.24630	NM_178066	ENSMUSG00000047090	Tmem198b	1110012D08Rik	transmembrane protein 198b	protein-coding	6.14663434003711	6.17633059203559	6.14772254448918	5.8452017273689	6.10825422459435	5.9187967843778	5.97405726998002	5.76340186473979	-0.18366373312863	0.464844469348949	0.7456185695221
Merged-chr3-83817852-4	chr3	83817734	83817934	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23774.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	4.113352227781	4.23504825556589	4.06277624666528	4.43363191913615	4.39824312588135	4.59288942644032	4.23764287525789	4.11155140113167	0.268545446799435	0.514367464845964	0.776966017760127
Merged-chr11-46813384-3	chr11	46813275	46813475	+	761.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 1 of 8)	B3|SINE|B2	2576.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	3.29749975196677	3.46230073438657	3.64810725074165	3.36884983263534	3.80440814928163	3.65822451848575	3.77608704418214	3.59382531858396	0.862926360242255	0.0743995201310396	0.29400862999152
Merged-chr12-76370441-4	chr12	76370338	76370538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172104)	promoter-TSS (NM_001172104)	172.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	7.14736143664007	7.17358984404361	7.14860140813774	7.27175497494725	7.21843558936776	6.87025790221298	7.55635517301153	7.40477211335728	0.132672004134232	0.522971758827756	0.782292510541377
Merged-chr11-87423732-2	chr11	87423632	87423832	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	intron (NM_031386, intron 1 of 30)	-3859.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	3.39658151450689	3.02749314758125	3.08486240937329	2.78742781939623	3.12352701304883	2.93307693260307	2.95124195603033	3.02295703742671	-0.290448354688911	0.639424679385619	0.847607151813091
Merged-chr7-34133314-4	chr7	34133214	34133414	+	983.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207212)	promoter-TSS (NM_207212)	-46.0	NM_207212	101543.0	Mm.422738	NM_207212	ENSMUSG00000036459	Wtip	-	WT1-interacting protein	protein-coding	5.47470335403689	5.05894934013823	5.60433433942922	5.692675080343	5.28935012917153	5.47692103313811	5.52628122322446	4.94282285536094	-0.28519816669723	0.376620279590371	0.679323270005651
Merged-chr8-119813187-4	chr8	119813089	119813289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 3 of 3)	intron (NM_028071, intron 3 of 3)	27390.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	8.47567594652529	8.42025700608437	8.70529773477914	8.61147254753991	8.39208763829849	8.45960256965885	8.63630453554336	8.50127764365759	-0.0762344253308751	0.626525471436156	0.840598969527146
Merged-chr6-120795697-4	chr6	120795586	120795786	+	922.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007510, exon 9 of 9)	3' UTR (NM_007510, exon 9 of 9)	21918.0	NM_001081048	71803.0	Mm.425340	NM_001081048	ENSMUSG00000004902	Slc25a18	1500015I14Rik|AW125787	solute carrier family 25 (mitochondrial carrier), member 18	protein-coding	4.3379482830383	4.35668006817719	4.76883396410527	4.43358059503111	4.43115151271052	4.68403267237116	4.53114249995891	4.33595417323316	0.0391890575331094	0.917167997298309	0.969459238985449
Merged-chr5-123376796-4	chr5	123376695	123376895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18003.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	7.10747451958711	7.23884317827171	6.90257388863245	6.83952623903133	7.03985349473593	6.71649593433378	6.58946152011467	6.63485645420302	-0.360439556979327	0.104744627593503	0.355927715065544
Merged-chr10-20834734-4	chr10	20834640	20834840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-109662.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	5.62634565821178	5.97264438489116	5.51021264073939	6.03291592958399	5.69924986032568	5.96110288738023	5.75573112776844	6.34793320353824	0.226815380568956	0.440331597289722	0.727741310566664
Merged-chr7-28372839-4	chr7	28372738	28372938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083912)	promoter-TSS (NM_001083912)	-176.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	8.74940399152432	8.90289715503685	8.70780972738127	8.67185198654329	8.920259369877	9.16674465021118	8.85434820490259	8.80701111639079	0.228983461152235	0.144098861447947	0.422839298305784
Merged-chr7-97944153-3	chr7	97944040	97944240	+	787.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177696, intron 1 of 17)	MTA_Mm|LTR|ERVL-MaLR	24182.0	NM_177696	233537.0	Mm.375772	NM_177696	ENSMUSG00000035582	Gdpd4	4921513O04	glycerophosphodiester phosphodiesterase domain containing 4	protein-coding	3.48931469239948	3.26190107898389	3.48980359563363	3.33756465951296	3.30119364160356	3.55056717234841	3.36555229929681	3.63860485435538	0.250946554368641	0.624608772975838	0.839562418121937
Merged-chr7-127274524-4	chr7	127274420	127274620	+	877.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009266)	promoter-TSS (NM_009266)	-461.0	NM_009266	20768.0	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	4.52273950240694	4.62907655126607	4.33298919176147	4.134332359243	3.97696192867663	4.07724442513492	3.82345706491613	4.0044670805741	-1.12593098644151	0.0094434655776785	0.0757894279347816
Merged-chr12-111160170-4	chr12	111160055	111160255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_130987, exon 4 of 4)	non-coding (NR_130987, exon 4 of 4)	-6215.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	7.77062880130277	8.26719893628709	7.86438491933982	7.62126430666294	8.05358154386684	7.97331530487977	8.12173857308177	7.52977999403596	0.0518602930082395	0.810266083565816	0.92679579587174
Merged-chr4-54494981-1	chr4	54494881	54495081	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-452964.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	2.94061923275294	2.77730834896022	3.67330342273183	3.19066143013174	2.53079877668688	2.61952730472264	2.50368447538604	2.58994775456845	-3.42095392498818	0.000105191914087012	0.00211929104240006
Merged-chr5-64759238-4	chr5	64759133	64759333	+	840.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44290.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	3.80533564112565	3.76988122266065	4.15416374205662	4.51382798026303	4.16224893518681	3.98288551584002	4.09171384871769	3.85955728435205	-0.217674371255959	0.651836742206321	0.854206632916705
Merged-chr13-36740155-3	chr13	36740059	36740259	+	869.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-5682.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	3.77488339200646	4.09198012464571	3.61785408978514	4.25516388441342	3.32377315423044	3.48935670143649	3.48852476261123	3.43715573555894	-1.74541774568525	0.000960153342067535	0.0130251104888556
Merged-chr16-20716485-8	chr16	20716388	20716588	+	909.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009900, exon 1 of 24)	5' UTR (NM_009900, exon 1 of 24)	148.0	NM_009900	12724.0	Mm.177761	NM_009900	ENSMUSG00000022843	Clcn2	AL118368|ClC-2|Clc2|nmf240	chloride channel, voltage-sensitive 2	protein-coding	2.93527273665986	2.86183054455692	3.0106485098604	3.42136358518414	3.33295639518886	3.61773493669006	3.20274627151036	3.95865400370356	1.63107794976356	0.0167062944423209	0.113227341082938
Merged-chr1-135789969-1	chr1	135789869	135790069	+	609.5	f0_balb.idr	Intergenic	Intergenic	-9452.0	NM_021467	21952.0	Mm.44379	NM_021467	ENSMUSG00000026418	Tnni1	2700018B22Rik|AI747285|ssTnI	troponin I, skeletal, slow 1	protein-coding	3.29118403506051	3.43861789566911	3.71834228158462	3.44195011438635	3.64101848789533	3.40394827488185	3.4552571514492	3.41048253808543	0.0318573237399674	0.950431598749023	0.982264362614525
Merged-chr12-65074009-4	chr12	65073803	65074003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013902)	promoter-TSS (NM_013902)	35.0	NM_013902	30795.0	Mm.28480	NM_013902	ENSMUSG00000020949	Fkbp3	25kDa|FKBP-3|FKBP25	FK506 binding protein 3	protein-coding	8.00162121606174	8.24910841544491	8.52010247734708	8.24179489503736	7.95806628356416	8.24175819533141	8.16333755471569	8.12959958568226	-0.181869449848664	0.303633485025115	0.616280128620795
Merged-chr7-125503600-4	chr7	125503507	125503707	+	945.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12065.0	NM_026330	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	4.4566103765018	4.35597698166696	4.67124761864866	4.41737827945824	4.85476533749362	4.88334909394477	5.01901368390439	4.8849875513523	0.928559420561453	0.00596390393559699	0.054006034185494
Merged-chr3-41582539-4	chr3	41582445	41582645	+	902.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130184, intron 2 of 10)	intron (NM_001130184, intron 2 of 10)	17665.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	4.68727154348182	4.86612667898603	4.48294504762915	4.94908509420266	4.74935618276872	4.47169546540549	4.41833292117092	4.60692774981	-0.421054106248192	0.251723055851678	0.563038266862185
Merged-chr11-5100055-4	chr11	5099962	5100162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001283063)	promoter-TSS (NM_001283063)	-103.0	NM_001290493	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	5.69494269434664	5.53290028862994	5.07048443291666	5.3426999094527	5.37171925015203	5.7712496036785	5.56982461348583	5.48833928291191	0.215970733390643	0.467152697146903	0.746801265647702
Merged-chr10-121475654-7	chr10	121475485	121475685	+	920.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	CpG	665.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	4.71376381219794	4.58024281682946	4.99463160145874	4.83777587464837	4.48442551757667	4.76766847183317	4.76778110102485	5.02214251512377	-0.0529576413090456	0.881625595802283	0.955384724180766
Merged-chr8-47688674-4	chr8	47688578	47688778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-13519.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	6.3905834044995	6.21952709921842	6.47094679169172	6.66271865381036	6.01990131162026	5.4783818825648	5.81761562431947	5.65404402192695	-1.05622791138116	6.56368001389023e-05	0.00142221059272053
Merged-chr3-133547050-4	chr3	133546933	133547133	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2643.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	4.8351658137678	4.89371012087072	4.90721408657346	5.0948953622745	4.75703068776145	4.85560402419169	4.73830845901905	4.75737559960749	-0.35574729380281	0.276196184519123	0.588251592396369
Merged-chr10-117910056-6	chr10	117909948	117910148	+	899.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15411.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	4.00260017072484	3.83926241145319	3.76562510041859	3.84396377782994	3.86466766278723	3.77351622030054	3.64331036041243	3.81479757013963	-0.243300848779112	0.587580945352774	0.819279988036301
Merged-chr11-85524394-4	chr11	85524332	85524532	+	813.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	171268.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	3.69137250856901	3.72719440410944	3.97287905135196	4.22767161784286	4.14696047858616	4.14630154053521	4.18487315570696	4.32199582978479	0.663503585175447	0.14575410174851	0.425521254242958
Merged-chr6-16964518-2	chr6	16964418	16964618	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66077.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	3.49508223858791	3.26763411749316	3.54790952652806	3.36646510065927	3.33889278440269	3.37518903022386	3.37139253281496	3.73548385128147	0.152024707517805	0.769428450824157	0.909742530773464
Merged-chr9-32656966-3	chr9	32656850	32657050	+	790.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39092.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	3.12248916118526	3.45761534673228	3.29321974908757	3.4712405915239	2.98433526718037	3.03456066194828	2.91880817860907	3.05929647167845	-1.4400022328804	0.0152603923617276	0.106169432891741
Merged-chr1-182539549-4	chr1	182539443	182539643	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21933.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	5.03425555120363	5.30285709175941	5.29821199872158	4.88800024595305	5.42377648662881	5.4714158354695	5.3845431531352	5.16985895922075	0.443185284541168	0.14583960818075	0.42565232470349
Merged-chr4-34550448-4	chr4	34550330	34550530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007589)	promoter-TSS (NM_001007589)	-185.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	8.81187527998293	8.9389498464311	9.09271131141467	9.19359678198605	9.08204664890678	8.98684260127718	9.16267125032179	8.99130543993272	0.0449062719840198	0.771960268668935	0.910644193035783
Merged-chr6-6216591-3	chr6	6216496	6216696	+	965.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177572, intron 1 of 17)	intron (NM_001177572, intron 1 of 17)	577.0	NM_015829	50799.0	Mm.24513	NM_015829	ENSMUSG00000015112	Slc25a13	AI785475|Ctrn	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	protein-coding	4.9438551795049	4.41455156727666	4.65507078279289	4.70490658139189	4.12568083423425	4.45573690872369	4.05207072636489	4.36916053785023	-1.01663482554704	0.0104744471708873	0.0816515907541988
Merged-chr10-117718462-2	chr10	117718362	117718562	+	835.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7704.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	3.16381760921463	3.13412854049171	2.85978095076696	2.60322665080425	3.15023875331673	3.03649405844065	3.03917987693025	2.98866145909696	0.426547248574763	0.502040716461893	0.769457185302407
Merged-chr15-36179711-4	chr15	36179579	36179779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_012031, exon 1 of 19)	5' UTR (NM_012031, exon 1 of 19)	149.0	NM_012031	26942.0	Mm.295539	NM_012031	ENSMUSG00000037617	Spag1	tpis	sperm associated antigen 1	protein-coding	6.00874361876332	6.12348107733273	5.69194627171792	6.28630283596191	5.95766389402041	5.8704221411848	6.15905477685838	6.08911656845315	-0.0648323972854827	0.802609258377547	0.923936032101707
Merged-chr14-120277198-4	chr14	120277099	120277299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	1530.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	7.65729114883223	7.51495011009081	7.7001890757361	8.02011150450148	7.68726688790649	7.47646548088469	8.03385168495106	7.53826800948065	-0.0543346336890893	0.794442928417961	0.920564651199299
Merged-chr10-81393663-4	chr10	81393568	81393768	+	858.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099917, intron 1 of 3)	intron (NM_001099917, intron 1 of 3)	604.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	4.00042531174553	4.13709469910286	4.0918849784531	3.8057751380077	3.72360203762646	3.73973651946263	4.02934073997286	4.04476227248438	-0.323760587366692	0.472006994600461	0.750284416102776
Merged-chr15-51955205-4	chr15	51955116	51955316	+	867.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36544.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	4.16953801849434	3.91575178584543	4.47164668437816	4.62522697767365	4.63661912517742	3.83369523743748	4.19944529135441	4.42982137516239	-0.0388735869955594	0.934867489119143	0.97635719558922
Merged-chr17-35979679-4	chr17	35979647	35979847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165892)	promoter-TSS (NM_001165892)	78.0	NM_001282013	75210.0	Mm.40036	NM_145487	ENSMUSG00000038500	Prr3	4930540G07Rik|Cat56	proline-rich polypeptide 3	protein-coding	7.09223224489795	7.02809791033505	6.46317708913271	6.69602688382498	6.64141646399885	6.9306198343732	6.46580983426352	6.74938860003968	-0.193874222300163	0.412307838783387	0.707513492207395
Merged-chr15-99032876-2	chr15	99032776	99032976	+	943.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_009448, intron 1 of 3)	intron (NM_009448, intron 1 of 3)	2985.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	3.19910921645736	2.75177058103063	2.6083872336003	2.85088761853193	2.75489104668924	3.01489557149959	3.13207335312459	3.43735673865586	0.968708906474092	0.15550471480381	0.441105889890422
Merged-chr13-4777043-4	chr13	4776933	4777133	+	953.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167869.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	4.64534717027129	4.85036716076322	4.32704857369501	4.67217023953659	4.76474136930134	4.85921795862344	5.03161918796455	4.60205147249827	0.374041563834311	0.295601581434079	0.607513569466314
Merged-chr3-156561796-3	chr3	156561682	156561882	+	677.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040399)	promoter-TSS (NR_040399)	-12.0	NM_177274	320840.0	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding	3.47764433810381	3.52430282397212	3.34492209909783	3.79434685800113	4.09837445972969	3.71758783800552	3.84451178464175	4.11487680302303	1.14662736095116	0.0247460359479944	0.147471374141183
Merged-chr5-143579954-4	chr5	143579870	143580070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31264.0	NM_026050	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	7.25899428909605	7.24851685876672	7.36538706776353	7.51831994558218	7.43403131368577	7.28658168321513	7.31869290929185	7.65520412877749	0.0960156892438973	0.612415640545859	0.832734411532616
Merged-chr8-75214452-2	chr8	75214349	75214549	+	572.0	f0_balb.idr|f1_balb.idr	intron (NM_029182, intron 1 of 2)	intron (NM_029182, intron 1 of 2)	505.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	2.86330572477345	2.90666055192369	3.12922265599791	2.90680970076709	2.48195573460351	2.47092250368732	2.59556313928707	2.73835013226927	-2.02914096883424	0.00539461898648599	0.0502399038125195
Merged-chr17-45433703-4	chr17	45433615	45433815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152810)	promoter-TSS (NM_152810)	-8.0	NM_152810	71702.0	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	6.77173649953854	6.92949750990439	6.56975663401666	6.23603110934175	7.12333410801887	7.05981973897101	7.09812559101609	6.7681055476917	0.539655917518866	0.0223357764885257	0.137815380953257
Merged-chr7-98872148-3	chr7	98872046	98872246	+	933.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33301.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	3.84520074103935	4.17876106837612	4.20156181359091	4.29552011030175	3.4686471508734	3.61372027619735	3.54821609887753	3.73685589873277	-1.68440150529009	0.000488779160442679	0.00758961864335722
Merged-chr8-69919211-4	chr8	69919116	69919316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 3 of 12)	intron (NM_001286450, intron 3 of 12)	-16658.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	5.97029111015469	5.84740995303858	5.54650734935838	5.73956815169224	5.62907838864516	5.47906865458968	5.67573402261722	5.4556161291159	-0.360035340286286	0.178471823302803	0.474282728191057
Merged-chr5-141094421-4	chr5	141094311	141094511	+	825.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93815.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	3.72520926441156	3.48970710027283	3.44185668378466	3.61206389512461	3.87604508586481	3.84493173697437	3.93986128099918	3.56097607259917	0.728342265485867	0.124298038229487	0.391259263361566
Merged-chr16-84836224-4	chr16	84836125	84836325	+	934.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016755)	promoter-TSS (NM_016755)	-600.0	NM_001302213	11957.0	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	4.58827270541248	4.3893385188055	4.58902168286224	4.52063905281515	4.13583280659635	4.75957437378883	4.31684030211284	4.54717784014431	-0.166277296456079	0.668977795683379	0.863357017638244
Merged-chr9-110623214-4	chr9	110623107	110623307	+	815.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026012, exon 2 of 5)	5' UTR (NM_026012, exon 2 of 5)	1186.0	NM_026012	67169.0	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	3.88529549514374	4.06590737209905	3.93715249597985	4.06317581430536	4.23606293810276	4.00672271961208	3.70519714231022	4.07733791253007	0.0889400486869192	0.84006825796324	0.939199492440635
Merged-chr7-4836513-4	chr7	4836464	4836664	+	915.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172737, exon 2 of 6)	exon (NM_172737, exon 2 of 6)	8132.0	NM_001290291	232813.0	Mm.44666	NM_172737	ENSMUSG00000053550	Shisa7	ckamp59	shisa family member 7	protein-coding	4.04263199534007	4.01625745060398	4.31445017655663	4.04886943110441	4.25291809533232	4.21704998957038	4.16756675833573	4.22762965524548	0.289805843987201	0.466725286464008	0.746483522894369
Merged-chr14-118691932-6	chr14	118691793	118691993	+	841.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 1 of 29)	intron (NM_001163676, intron 1 of 29)	14326.0	NM_001163676	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	3.72135075594111	3.53237177969248	3.83580914378958	3.32544748485276	4.22594192858261	4.46125529504497	4.19285227128863	4.12594635923977	1.85626298882637	4.38769346466428e-05	0.00100973693217374
Merged-chr11-20712384-4	chr11	20712273	20712473	+	962.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181411, intron 2 of 8)	intron (NM_181411, intron 2 of 8)	29183.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	4.40240251868512	4.64539774101686	4.44874947549637	4.69633454105177	5.18655812154732	4.75012961083682	4.33690635466594	4.30411859456146	0.322736179335595	0.440836201069121	0.728164773822774
Merged-chr3-87356795-4	chr3	87356684	87356884	+	948.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1097.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	4.32468095669049	4.29220472920356	4.53008036000637	4.14753892232378	5.38440023132913	5.18109620968713	5.37309242444698	5.49080921300536	2.13961184416647	6.00014152328066e-11	4.75594736620929e-09
Merged-chr13-55622972-4	chr13	55622883	55623083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007596)	promoter-TSS (NM_007596)	-22.0	NM_007596	12328.0	Mm.2313	NM_007596	ENSMUSG00000021501	Caml	AI385748|Camlg	calcium modulating ligand	protein-coding	5.90751291001479	5.64844207611912	5.01369546659509	5.6442862018319	6.20454647726388	6.20936395586438	5.92167752823142	6.01082558748342	0.800175342814891	0.00596181890033785	0.0539962218484728
Merged-chr5-21784590-4	chr5	21784483	21784683	+	949.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011188)	promoter-TSS (NM_011188)	582.0	NM_009584	22791.0	Mm.266312	NM_009584	ENSMUSG00000029014	Dnajc2	AU020218|MIDA1|Zrf1|Zrf2	DnaJ heat shock protein family (Hsp40) member C2	protein-coding	3.77807135286313	3.99805035713775	3.66899569454508	3.7420957432815	4.03638169515198	3.7867833542794	3.86326087341485	3.82790389675137	0.252248686393234	0.573880267122914	0.811973307930812
Merged-chr15-59816327-4	chr15	59816223	59816423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-21364.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	5.70196368924262	5.23343337437927	5.70296415315316	6.0934604997734	5.72172244779626	5.40812996174165	5.5442928898866	5.90434526834931	-0.123617854342221	0.694162419488358	0.875749501183301
Merged-chr4-139240546-1	chr4	139240446	139240646	+	783.5	f0_balb.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	46435.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	3.04169129846946	3.15161221400004	2.92535268166078	3.17834111923284	2.72506628339329	2.68192209591718	2.57305875686334	3.04041605568359	-1.45947394437971	0.032767267026919	0.177431821963413
Merged-chr3-10419105-4	chr3	10418972	10419172	+	950.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029068, exon 8 of 8)	3' UTR (NM_029068, exon 8 of 8)	21058.0	NM_029068	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	4.86098890366553	4.85681826348726	5.12049720569664	5.40053828690603	4.68808278140345	4.57409317908798	4.51680416619047	4.66544874175205	-0.988349906092879	0.00568388220237891	0.0522472406459396
Merged-chr4-40971970-4	chr4	40971859	40972059	+	975.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290448, intron 1 of 15)	B3|SINE|B2	1016.0	NM_023739	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	4.80527946634218	5.32876416743051	4.35665543269989	4.69624331028154	5.17629185182509	4.86361860987397	4.78326873836659	4.94657413053587	0.220650943293939	0.568151140463782	0.808533699083743
Merged-chr13-18800610-4	chr13	18800516	18800716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	83324.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	8.08577225784806	8.08600544636302	8.26903589969069	8.04579458872658	7.94412833524041	7.9089682738681	8.02310877565768	7.67457961122071	-0.290137118490846	0.0839665190169139	0.315091356869724
Merged-chr16-4684025-4	chr16	4683896	4684096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023646)	promoter-TSS (NM_023646)	-74.0	NM_023646	83945.0	Mm.248337	NM_023646	ENSMUSG00000004069	Dnaja3	1200003J13Rik|1810053A11Rik|C81173|Tid-1|Tid1l	DnaJ heat shock protein family (Hsp40) member A3	protein-coding	6.95673886224483	7.09057403643114	7.39647957466481	6.77548558890826	7.12056732143648	7.32868798993949	6.94864458733826	6.9660906302147	0.0487556637384233	0.825534909815547	0.933108872014231
Merged-chr19-8929492-4	chr19	8929406	8929606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009073)	promoter-TSS (NM_009073)	-150.0	NM_009073	19881.0	Mm.426094	NM_009073	ENSMUSG00000071648	Rom1	M101156|Rgsc1156|Rom-1|Rosp1|Tspan23	rod outer segment membrane protein 1	protein-coding	7.12462461960494	6.9627801688861	6.96306807479726	7.22782833359218	7.05853194263752	7.43605500533052	7.48749939794393	7.21140993659647	0.29940172242485	0.138222692571356	0.413600027627647
Merged-chr16-29451892-4	chr16	29451797	29451997	+	891.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164613, intron 14 of 21)	intron (NM_001164613, intron 14 of 21)	-73165.0	NM_175650	268878.0	Mm.9823	NM_175650	ENSMUSG00000048939	Atp13a5	C630015F21Rik	ATPase type 13A5	protein-coding	4.51346844012158	4.45556762502064	4.25490607608655	4.44091694685093	4.37634084446515	4.38148663202202	4.60391821425966	4.34439188913626	0.0171890616886498	0.963058198457459	0.986806397465601
Merged-chr17-5025584-4	chr17	5025491	5025691	+	936.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 1 of 19)	intron (NM_001085355, intron 1 of 19)	30517.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	3.66461038903083	3.54525236094132	4.09334261356474	4.04456884419504	4.30899410500978	4.35048360337353	4.02917143389085	4.09079394569154	0.87685584126054	0.0596835273814426	0.257593999904409
Merged-chr17-42875735-4	chr17	42875630	42875830	+	950.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009847, intron 1 of 17)	intron (NM_009847, intron 1 of 17)	694.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	4.2580915952046	4.34166898540575	4.50937069598589	3.4196099750887	4.55539764247621	4.47887130926261	4.44937037266049	4.20921077055368	0.56131548222689	0.251597039652805	0.562892525080843
Merged-chr11-43568465-3	chr11	43568376	43568576	+	593.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001045530, intron 3 of 5)	intron (NM_001045530, intron 3 of 5)	33086.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	3.21028902814581	3.26892166480615	3.39342706484026	3.2684390347373	3.07758095355338	3.67291867661413	3.26249518873846	3.8217005836622	0.692624553374888	0.222495861945112	0.530571642513691
Merged-chr2-164679346-4	chr2	164679247	164679447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5260.0	NM_001161806	629761.0	Mm.389336	NM_001161806	ENSMUSG00000078940	Wfdc11	-	WAP four-disulfide core domain 11	protein-coding	5.03009106696366	5.23219612901151	5.06518391954743	4.78072461240159	4.88329449012985	5.17106173957288	5.22703583972808	5.36087136259073	0.266026443069827	0.414968981708774	0.709411978793563
Merged-chr5-28037799-4	chr5	28037710	28037910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33602.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	6.27425967248227	6.4154034101091	6.85120209170627	6.71553982592133	6.38495011903361	6.58287457010279	6.18295888097026	6.3840285074171	-0.294839285037179	0.218396700002151	0.525674919161812
Merged-chr1-120265399-4	chr1	120265289	120265489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133186)	promoter-TSS (NM_133186)	-109.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	8.10938013282105	7.79821613647284	8.15828183579388	8.25277766004898	7.54805077638321	7.55047757523433	7.89010534546288	7.61428674058014	-0.568029231185172	0.00235969628847826	0.0265575208267424
Merged-chr1-105990414-4	chr1	105990312	105990512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122676)	promoter-TSS (NM_001122676)	6.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	9.31731461617788	9.57492726933643	9.84158598408202	9.52681020023632	9.58379940121451	9.73884461556588	9.75099713032736	9.49747597514025	0.0834007527483722	0.60799395845753	0.83032239482552
Merged-chr7-141562160-4	chr7	141562031	141562231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007459)	promoter-TSS (NM_007459)	-49.0	NM_001357068	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	7.88122035680415	8.08139657522279	7.96024613308792	7.80099566670776	7.82803298492543	7.87152190640941	7.95573054730651	7.68923255493341	-0.11907218654338	0.480953366208521	0.756246789196702
Merged-chr3-51708798-4	chr3	51708674	51708874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	47595.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	5.38685302532105	5.03120484450736	5.30195631387686	5.51234845508711	5.1602276518363	5.31947256650213	5.15232621264333	5.17407302104878	-0.241933299219728	0.423674893039917	0.715570066410379
Merged-chr17-47777957-2	chr17	47777847	47778047	+	909.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	B1_Mus2|SINE|Alu	-7797.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	2.80893975803347	2.72665838342991	2.87747112585559	2.69233933225205	2.73099753945178	3.11748790481033	3.21157571544961	3.32196643545913	1.4377368186503	0.0215532807217221	0.134514771459137
Merged-chr3-15128539-3	chr3	15128429	15128629	+	970.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	157328.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	4.6544969171459	4.74132720746137	4.84139761776035	5.65167354482041	4.15869867291643	4.3103654214014	4.67213742655434	4.28569578911345	-1.47940750513801	0.000735928482115544	0.0105355296517503
Merged-chr9-80067623-5	chr9	80067552	80067752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311110, intron 1 of 23)	CpG	749.0	NM_146003	215351.0	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	5.34238328196926	5.43959802909103	5.95610726463978	5.30917510300256	5.32829061876977	5.4883630728765	5.08617723559957	5.30887145610025	-0.385673647302861	0.220608669248109	0.528550421367638
Merged-chr17-32810868-4	chr17	32810766	32810966	+	946.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001267583)	promoter-TSS (NM_001267583)	-935.0	NM_183177	240063.0	Mm.30675	NM_183177	ENSMUSG00000055202	Zfp811	BC052046	zinc finger protein 811	protein-coding	3.93692662972922	5.06376588491656	4.67034763006382	3.72110215938836	5.10053397361323	5.03336622395063	5.05647524482141	4.95592935608401	1.12395100424149	0.120701443236785	0.384680506725841
Merged-chr7-45708367-4	chr7	45708290	45708490	+	936.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016974, exon 3 of 4)	exon (NM_016974, exon 3 of 4)	3143.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	4.16380024534957	4.09025403492634	4.16440176331483	4.40476372702275	4.50173310070277	4.47950739610938	4.56593611398869	4.47210235585875	0.645914907111784	0.0933754636046092	0.334219737655465
Merged-chr7-12979759-4	chr7	12979685	12979885	+	896.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175558, intron 3 of 5)	intron (NM_175558, intron 3 of 5)	1937.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	4.39917347822562	4.2639759531434	4.5447303878303	4.19246181984626	5.05585292796469	5.00831352773919	5.49447241916718	5.26113137292323	1.80660679113291	1.65301704254988e-07	6.7776555340817e-06
Merged-chr16-18348171-4	chr16	18348093	18348293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001272029)	promoter-TSS (NM_001272029)	11.0	NM_001272029	11877.0	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velocardiofacial syndrome	protein-coding	6.99852911929336	6.85612925506184	6.98752732838168	7.31871181466311	6.81846773920588	6.58337651465026	6.97641083807434	6.41883964007653	-0.477619850417954	0.036655725325027	0.190575045947922
Merged-chr7-45316312-2	chr7	45316212	45316412	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175130, intron 14 of 24)	intron (NM_175130, intron 14 of 24)	-8646.0	NR_110499	100040970.0	Mm.289810	NR_110499	ENSMUSG00000046721	Rpl14-ps1	Gm9811	ribosomal protein L14, pseudogene 1	pseudo	3.47418553154164	3.94468630355756	3.79953030137779	3.33612458817614	3.80799609305821	3.96887050225274	3.26697022721841	3.59010828206422	0.079597969391292	0.885266363904438	0.956964796206656
Merged-chr4-46202382-3	chr4	46202260	46202460	+	882.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAC)n|Simple_repeat|Simple_repeat	-6049.0	NM_011728	22590.0	Mm.247036	NM_011728	ENSMUSG00000028329	Xpa	AI573865|Xpac	xeroderma pigmentosum, complementation group A	protein-coding	3.75593966684653	3.47115027767455	3.54348610147175	3.67406122107551	3.85816437674066	3.71757049367893	3.96188021304782	3.28818682957622	0.355049062148574	0.488305942002348	0.76118893988362
Merged-chr11-95840249-4	chr11	95840136	95840336	+	872.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163464, intron 1 of 7)	intron (NM_001163464, intron 1 of 7)	-2059.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	3.68277801497624	3.9416307870576	3.79310802618476	3.7847513307618	4.00712580260618	3.96517881008026	3.66946796527812	4.03010534207067	0.351509926639009	0.430870623531543	0.721309079893587
Merged-chr10-40097637-4	chr10	40097538	40097738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	MTC-int|LTR|ERVL-MaLR	44616.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	6.96968147936177	6.41539080025422	6.37033098821872	6.88778949834352	6.19852243269976	6.19267476631663	6.57027557291715	6.18900020517698	-0.585658829996056	0.0208146657638715	0.131561570660613
Merged-chr2-73338632-4	chr2	73338536	73338736	+	927.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029022)	TTS (NM_029022)	25984.0	NM_001355711	74616.0	Mm.247457	NM_029022	ENSMUSG00000008226	Scrn3	4833415E20Rik|AI427019|AV002033|Ses3	secernin 3	protein-coding	4.82867929194857	4.83275181576991	5.23490259026396	5.06056717648324	4.67191008050361	4.67526549968903	4.76951475745843	4.67007301388262	-0.62869666450859	0.061695762941293	0.262771823264618
Merged-chr3-51511077-4	chr3	51510966	51511166	+	977.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27100.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	4.93480351116068	4.58803656308454	4.64773990106766	4.60912127357439	4.99093514704105	4.65278343546239	4.87913205540806	4.4724399009347	0.169507891385664	0.636831866653405	0.846465153526969
Merged-chr12-44908235-4	chr12	44908122	44908322	+	855.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144552, intron 2 of 5)	intron (NM_144552, intron 2 of 5)	166261.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	4.14964637577006	4.21619258629967	4.39754042486871	4.60633521875116	4.46439403403873	4.73848969205748	4.97195420617652	4.52333876993044	0.69263033975051	0.0825673296138664	0.312012102069728
Merged-chr2-126152078-4	chr2	126151982	126152182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026981)	promoter-TSS (NM_026981)	-59.0	NM_001355583	69185.0	Mm.29019	NM_026981	ENSMUSG00000023330	Dtwd1	1810033A06Rik	DTW domain containing 1	protein-coding	8.20403667958607	8.49652853560127	7.96264473529563	8.2769943589373	8.23717446473097	8.17604817709814	8.49879763967732	7.98594075615487	-0.0174744066555084	0.926740715946646	0.97311398085719
Merged-chr2-80065326-4	chr2	80065202	80065402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	RMER19C|LTR|ERVK	-26400.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	5.4928488873922	5.31808633137342	6.20080030617108	6.35373195534406	5.40242490421439	5.3788955221187	5.63127130978984	5.68176072544503	-0.661389071233697	0.0529491742702022	0.240011575574057
Merged-chr10-117821996-4	chr10	117821920	117822120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 3 of 7)	intron (NM_024457, intron 3 of 7)	23954.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	5.72475539528654	5.7038144388712	5.62473586869052	5.89015614414133	5.79648637370355	5.63290171651769	5.36822386411619	5.53941639437461	-0.246461797652458	0.363679742714609	0.668690855721304
Merged-chr6-86583770-4	chr6	86583673	86583873	+	911.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44401.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	3.63634811299827	3.91652899303358	3.87664946789924	4.35422111281565	4.17761303924666	4.15615795889165	4.49092452080062	3.92828160114697	0.539089746625057	0.268561950867562	0.580190630132105
Merged-chr2-116977168-4	chr2	116977054	116977254	+	887.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77002.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	4.19640194211213	4.44946572710859	4.62151898226319	4.51417671415036	4.15372665410793	4.63937413616175	4.56306966273889	4.14342139770936	-0.164516177422129	0.682963228358462	0.870148191722498
Merged-chr15-84979478-4	chr15	84979367	84979567	+	927.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	8504.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	4.54546281678112	4.35510132545665	4.66564345507725	4.69774544342016	4.53997553706338	4.63506108620514	4.85128957695779	4.62404159226571	0.17959557086997	0.615968761419048	0.8347429835703
Merged-chr8-26960241-6	chr8	26960105	26960305	+	717.527771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17131.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	3.03294964369053	2.97907884805177	3.03333784050444	3.06148412307156	3.07310285815274	2.88520391938999	2.90389094489749	2.84783288044642	-0.393140031196842	0.507372013082842	0.772711824020018
Merged-chr15-80704473-4	chr15	80704388	80704588	+	873.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6825.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	4.23415892104572	3.89231036009665	3.71985063258631	3.87811021758263	4.31982764202817	4.01955306680278	4.3355834016253	4.39136968842158	0.868785733615211	0.0411634621470474	0.205266503584467
Merged-chr9-102835322-4	chr9	102835231	102835431	+	857.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284258, intron 1 of 13)	CpG	411.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	4.40811202454632	4.37988879183227	4.57683782515521	4.31121012071524	4.701850015384	4.34392280445877	4.70242199580522	4.79005097771046	0.530427324597796	0.145305963961899	0.424752903853964
Merged-chr2-71390122-4	chr2	71390005	71390205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026115, intron 2 of 10)	intron (NM_026115, intron 2 of 10)	845.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	7.10599678245128	7.23886114742239	6.744958224452	7.05735106864025	7.14659092929278	7.16182187113783	6.94962522883153	7.20290586355952	0.0912744528711249	0.649305448792389	0.852690827261032
Merged-chr5-139702396-4	chr5	139702318	139702518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33915.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	6.94894344340154	6.77622300904348	7.36027678432594	7.23836901709936	6.8101590019581	6.61436215203873	6.82210410240349	7.07930983079135	-0.367252586256484	0.103777446791347	0.354081810639886
Merged-chr6-28215477-7	chr6	28215373	28215573	+	971.619019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	46128.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	4.186136106009	4.77072614849017	4.75039226639749	4.23434750313665	4.70730224409769	4.47011817691008	4.76166992960425	4.67505869043722	0.342483753402569	0.381333285441777	0.683563058438105
Merged-chr5-45384391-3	chr5	45384368	45384568	+	682.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131933, intron 1 of 5)	RMER6B|LTR|ERVK	39932.0	NR_131933	52401.0	Mm.33854	NR_131933	ENSMUSG00000029092	D5Ertd615e	4930435H24Rik	DNA segment, Chr 5, ERATO Doi 615, expressed	ncRNA	2.89815410658977	3.37355495304052	2.83907011812917	2.83397333405526	2.29543041867391	2.52039724272444	2.48776395573702	2.56923287397985	-3.33008271206827	0.000244393104110485	0.00428253489844416
Merged-chr1-92659574-4	chr1	92659479	92659679	+	877.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10738.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	4.23358856810575	4.15561281409104	4.72955398056487	4.90614979698771	4.26299596480785	4.50710635994264	4.26507837570383	4.72632515975623	-0.243543929416114	0.573808166758153	0.811973307930812
Merged-chr12-69177189-2	chr12	69177089	69177289	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081406, intron 3 of 3)	B2_Mm1a|SINE|B2	6878.0	NM_025589	66483.0	Mm.379115	NM_025589	ENSMUSG00000049751	Rpl36al	2410038A03Rik|RPL36A	ribosomal protein L36A-like	protein-coding	3.92967413220652	3.68108944195901	3.75169765727501	3.14023267037065	3.58217268763062	3.54304803729766	3.52986216311233	3.48443685972743	-0.36098889103295	0.509614400288489	0.774132584192743
Merged-chr6-4997769-3	chr6	4997663	4997863	+	857.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	94443.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	3.71887730054687	3.61176222957905	3.62202213287138	3.79529262093941	3.47057533503142	3.38761449602786	3.44748526297565	3.27415430323259	-0.985172675485375	0.0513002031769562	0.235117240268405
Merged-chr3-88072022-4	chr3	88071915	88072115	+	816.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172526, intron 6 of 9)	intron (NM_172526, intron 6 of 9)	6289.0	NM_172526	214191.0	Mm.229191	NM_172526	ENSMUSG00000051036	Ttc24	A430025D11Rik	tetratricopeptide repeat domain 24	protein-coding	4.05848929510209	4.11553397061324	3.49946686981068	3.89139150653062	4.17938313816235	3.98460156982074	3.67960299732024	4.30355503790221	0.39498256061845	0.417272040533719	0.711077750799626
Merged-chr9-7869407-4	chr9	7869269	7869469	+	902.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	3801.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	4.41264891715763	4.11302874226524	3.91767630488423	3.87330082400586	4.17051977683286	4.24623573176797	4.10282838885478	4.2088462054276	0.252816130357602	0.55065237833388	0.798673593705145
Merged-chr12-33303142-4	chr12	33303024	33303224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	609.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	7.70183931424605	8.31442054835552	8.04254330495353	7.72751426555545	7.98085045472099	7.97853421341035	7.9173704006474	7.71472575584732	-0.084550039784115	0.673188160133204	0.865659676081176
Merged-chr1-164088073-4	chr1	164087987	164088187	+	916.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26011.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	4.61074441554017	4.37384524181794	4.61150672121581	4.28544451693579	4.03274908183233	4.44892923026629	4.55196397063406	4.71549219005569	-0.0349673326682347	0.931379189929871	0.975279137937273
Merged-chr6-39379955-4	chr6	39379808	39380008	+	942.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1445.0	NM_011226	19331.0	Mm.123866	NM_011226	ENSMUSG00000029923	Rab19	-	RAB19, member RAS oncogene family	protein-coding	4.35951165951053	4.24670359724702	4.36020550702243	4.06160296285535	4.39550959362535	4.0521327189162	4.12100923252905	4.27344570961565	-0.0566145322179229	0.889246856294803	0.958502967838872
Merged-chr7-98803407-4	chr7	98803349	98803549	+	940.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-31663.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	4.70329703090146	4.74914295017555	4.8133025421715	4.86175001708099	4.41836750735466	4.79916855301706	4.33861743318682	4.7747318733613	-0.42647347285259	0.234493217772651	0.544407604548078
Merged-chr16-88487952-4	chr16	88487851	88488051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19027.0	NM_181490	239931.0	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding	6.57767425835954	6.6642525310847	6.49448922454687	7.13482546419747	6.63604993834765	6.61862671398751	6.60859122518937	6.77002538553535	-0.151688993543282	0.522557041573315	0.781984393191359
Merged-chr8-95808103-4	chr8	95808016	95808216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178078)	promoter-TSS (NM_178078)	-654.0	NM_001205226	234594.0	Mm.259220	NM_153164	ENSMUSG00000036550	Cnot1	6030411K04Rik|AA815922|D830048B13	CCR4-NOT transcription complex, subunit 1	protein-coding	7.12520719363364	7.59989613167936	6.95610259317674	7.36780124409402	7.3874070394716	7.5679290935813	7.675135340637	7.56986927697322	0.342725303790121	0.0984829354345555	0.343994301133918
Merged-chr2-132604065-3	chr2	132603959	132604159	+	821.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 2 of 3)	intron (NR_033469, intron 2 of 3)	5863.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	4.20947124623614	3.82857094573529	4.28821943798902	4.57478141726654	3.50485409463698	3.65910781061281	3.59163454312577	3.78174575242122	-1.8308721943585	0.000235281321414149	0.00415560525482326
Merged-chr6-8494600-4	chr6	8494496	8494696	+	956.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14565.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	4.35066167630943	4.29495967738994	4.20367281498405	4.43597858914639	4.89509745529086	4.77503734229913	4.61986287640737	4.48115155916365	0.8318766542608	0.0243569883078492	0.145812116969252
Merged-chr10-80174964-3	chr10	80174898	80175098	+	871.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027207, exon 3 of 3)	3' UTR (NM_027207, exon 3 of 3)	2054.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	3.53210100059711	3.44724245569854	3.58498976862345	3.16087385286195	3.65185551209934	3.53629481429524	3.40815446087037	3.58289346952263	0.415269476026277	0.42013844845271	0.713128284783962
Merged-chr11-116018274-4	chr11	116018126	116018326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5507.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	5.58728880877356	5.59471311057914	4.52090911456508	4.72346367355335	5.22367550195013	5.38494461841015	5.15218732498403	5.32627664823292	0.146667199051043	0.71105254706289	0.884240356833917
Merged-chr17-32283506-4	chr17	32283398	32283598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286630, intron 1 of 19)	intron (NM_001286630, intron 1 of 19)	625.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	5.27427167534205	5.7754068101754	5.14583415774698	4.59818346492557	5.73215269357294	5.53868887955569	5.18617934724483	4.83765248884178	0.191889843135821	0.634270103171025	0.845095562869841
Merged-chr6-71980658-3	chr6	71980546	71980746	+	916.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61882.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	3.89596405494077	3.79155011336469	3.84454270862604	4.6031536920546	3.65405238727141	3.79468937407487	4.06726410772415	3.84236547865823	-0.691797392776102	0.176556688015411	0.471696597404882
Merged-chr19-4755786-4	chr19	4755671	4755871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025717)	promoter-TSS (NM_025717)	-754.0	NM_025717	66704.0	Mm.396734	NM_025717	ENSMUSG00000033760	Rbm4b	4921506I22Rik|AI504630|AI506404|Lark2|Neosin	RNA binding motif protein 4B	protein-coding	5.48657131240728	5.321305610351	4.95382350636352	4.91076379342776	5.57410509952272	5.49716131555699	5.45958199434788	4.69432700275617	0.311785335767692	0.387058597309839	0.688085997159096
Merged-chr17-70850591-3	chr17	70850515	70850715	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164076)	promoter-TSS (NM_001164076)	595.0	NM_009372	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	5.69485744311398	6.0734187568139	5.61567406172523	5.0564872352172	6.01539428067968	6.10574080005423	5.92226857805845	5.66566033793073	0.470655948185092	0.140726525213699	0.417299137101096
Merged-chr12-8922152-6	chr12	8922105	8922305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008640, exon 1 of 7)	exon (NM_008640, exon 1 of 7)	898.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	7.13539316126155	7.66396043858654	8.17118195117296	7.54565003092028	6.96747679866128	7.57088988877151	7.22951930967216	7.65902876871868	-0.397393630296514	0.128081731743366	0.39829793940521
Merged-chr6-122921643-4	chr6	122921537	122921737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199311)	promoter-TSS (NM_199311)	-211.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	7.67047990083667	7.94942867935938	7.46459343208931	7.93152203501306	7.44541200764271	7.87371856706105	7.46616522767464	7.43970042917486	-0.278278868119905	0.170498311230179	0.463684279922871
Merged-chr13-24684693-4	chr13	24684587	24684787	+	898.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080381, intron 8 of 14)	intron (NM_001080381, intron 8 of 14)	46039.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	4.43636197783064	4.77236949123433	4.68056448888363	5.00634150206768	4.47778451993704	4.52147945690743	4.46082444525311	4.24242467168313	-0.723941517224855	0.0565954170611185	0.24918997841107
Merged-chr13-43173441-4	chr13	43173338	43173538	+	858.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1937.0	NM_001252640	67046.0	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding	3.69377354940324	3.95268538236714	3.69425305945781	3.78871639926058	4.21967807300682	4.02727866756285	3.68037954056446	3.95123922416193	0.566270476496503	0.215010257532127	0.521004727057943
Merged-chr9-50482939-4	chr9	50482834	50483034	+	895.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11591.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	4.6264032659457	4.3925488071972	4.83487625138169	4.66916658240211	4.35271811973798	4.2513393038036	4.35775113479107	4.89258376408634	-0.338811137403111	0.391687582890847	0.691351450352092
Merged-chr9-105033866-1	chr9	105033766	105033966	+	714.0	f0_c57.idr	3' UTR (NM_001357439, exon 16 of 16)	3' UTR (NM_001357439, exon 16 of 16)	-19402.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	4.5084500061821	4.6446501298681	4.5469560730647	4.14869877482268	4.2448567151809	4.0644020374238	4.40958327148793	4.20518938026283	-0.538746797749	0.188104520664302	0.486646010117556
Merged-chr9-7336933-4	chr9	7336854	7337054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7443.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	6.27032953593767	6.11803738379298	6.09885505079309	6.31848264224596	5.9486956676257	6.31417438250408	5.86882776562208	5.79458398241748	-0.340759814247002	0.169259261489037	0.461810218243184
Merged-chr8-106936174-1	chr8	106936074	106936274	+	982.0	f0_balb.idr	exon (NM_009229, exon 1 of 7)	exon (NM_009229, exon 1 of 7)	424.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	4.83254304298864	4.74000604243413	4.83334650116563	4.69286694944273	4.69119751750197	4.77962696411279	4.49937318865447	4.68294047040757	-0.215500572369591	0.524775116040805	0.783101934504021
Merged-chr5-64391614-4	chr5	64391530	64391730	+	976.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76312.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	6.60309473044734	6.362278062029	6.23509494506374	6.48928425035104	5.65855349294838	5.55702205232295	5.50847152604649	5.09861452732463	-1.51775573061177	2.32654618359583e-08	1.14602927890773e-06
Merged-chr10-117864842-2	chr10	117864742	117864942	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-18868.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	3.08755810684906	2.87223936226627	2.9576244839769	2.82049470465154	3.42501681536826	3.2615456270043	3.24852568721024	3.31326543755645	1.56057530113835	0.00508546665808959	0.0480906644421627
Merged-chr6-26393121-3	chr6	26393019	26393219	+	558.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	461693.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	3.51991421250557	3.0084157194865	3.88065869023747	3.43732155290087	3.13403785171344	3.34411002214147	3.28101519218217	3.56939152542382	-0.527244676855149	0.377498174037369	0.68018283034138
Merged-chr12-79181947-3	chr12	79181863	79182063	+	819.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021557, intron 6 of 6)	B2_Mm2|SINE|B2	8998.0	NM_001362269	17252.0	Mm.291799	NM_021557	ENSMUSG00000066441	Rdh11	2610319N22Rik|AI428145|AU045252|Arsdr1|C85936|CGI-82|HCBP12|M42C60|Mdt1|Psdr1|SCALD|UBE-1c1|Ube-1c|ralR1	retinol dehydrogenase 11	protein-coding	3.70913740417451	3.88362192548528	3.60316255561043	3.63582649594801	3.35029570148671	3.82878546743023	3.69425080170523	3.60119916919338	-0.277593646921762	0.573101938160677	0.811684399314301
Merged-chr15-79946192-4	chr15	79946134	79946334	+	890.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13588.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	4.47822568378835	4.61026550033191	4.25628394609608	4.0508237166572	4.37913235817699	4.69041293482552	4.61048968000466	4.34726890974625	0.361561296766496	0.365107741740655	0.669793916220568
Merged-chr11-70447598-4	chr11	70447509	70447709	+	963.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4322.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	5.32764198481712	5.22723769207023	4.94200596691668	5.04736976899955	5.25515224826453	5.29115512023761	5.18655700188086	4.77908050636523	0.0148586331741068	0.962978255734216	0.986785288222419
Merged-chr4-132564155-4	chr4	132564057	132564257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081211)	promoter-TSS (NM_001081211)	90.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	6.75123058758821	6.83942825659718	6.65365273659979	6.61265922087758	6.14400434166839	6.49636101116387	6.30563366273861	6.10710870609591	-0.660128883817215	0.00289537918961567	0.0311126502623269
Merged-chr7-83643600-3	chr7	83643511	83643711	+	914.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001360089, exon 7 of 7)	3' UTR (NM_001360089, exon 7 of 7)	11594.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	4.02747350342652	4.07577482433735	3.88859923820712	3.53349591185513	4.20619119531651	3.73507537261177	3.66157558459373	3.67353710643948	-0.110016527306346	0.827563671691289	0.933903677361406
Merged-chr3-94588174-4	chr3	94588077	94588277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-5461.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	7.84202273797594	7.77439063109131	8.22888320667479	7.90142893696938	7.41715270981659	7.78065248505291	7.44557948189597	7.12017276921206	-0.639287099930719	0.00200936344305565	0.0234774262168841
Merged-chr3-8981053-1	chr3	8980953	8981153	+	813.0	f0_balb.idr	intron (NM_009412, intron 1 of 5)	MTD|LTR|ERVL-MaLR	-16907.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	3.54089739408512	3.45030670478149	3.63934162696758	3.84389867005684	3.42503353496576	3.23506586934315	3.04489044692522	3.25611175511051	-1.34074540639123	0.0179232649378151	0.118830111308564
Merged-chr8-123331595-4	chr8	123331482	123331682	+	788.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1131.0	NM_172287	234857.0	Mm.150200	NM_172287	ENSMUSG00000010154	Spire2	BC026502|Spir-2|Spir2	spire type actin nucleation factor 2	protein-coding	3.49012750781855	3.76331017466942	3.75697328729271	3.32824845978147	3.25735155315113	3.92643566053035	3.41767600830359	3.75463653614924	0.0585942603598335	0.91408311831686	0.967873172075434
Merged-chr17-4908397-4	chr17	4908302	4908502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-86672.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	6.82209206902599	6.87233816104975	6.58352571028092	6.76823950241364	6.92340845684741	6.95783698399226	6.78861763418571	6.3238751164879	0.0118606402134683	0.958210781865753	0.985110633982061
Merged-chr18-12947923-4	chr18	12947844	12948044	+	965.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6103.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	4.61445883251232	4.5629514341449	4.77176125543706	4.97090575913424	4.51462153634633	4.90675987920186	4.78508952656278	4.76859645284785	-0.0294000442514057	0.934441957946103	0.976356212091203
Merged-chr9-21181640-4	chr9	21181531	21181731	+	974.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	CpG	-2470.0	NM_001310750	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	5.43729696107682	4.95941962306352	5.28450880370545	5.11075591812466	4.65087280674246	4.70572893164496	4.8813716459836	4.86421031420993	-0.84623214588719	0.0108217882378488	0.0835721020919862
Merged-chr7-19253887-4	chr7	19253783	19253983	+	890.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17971.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	4.33504852222348	4.15499009948495	4.24503451487136	4.1351265599178	4.47020515452771	4.16826791891622	4.27206486065518	4.86080645460389	0.613894960505721	0.128985279284729	0.399557976943498
Merged-chr15-76230970-3	chr15	76230868	76231068	+	860.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163542, intron 1 of 33)	intron (NM_001163542, intron 1 of 33)	410.0	NM_001163542	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	3.09597849414181	3.62850548418452	3.16172077757787	3.202504283741	3.27785211187269	3.27303508785707	3.32749801894153	3.4452843586552	0.148287197115249	0.789235659819213	0.918354557737069
Merged-chr19-18713094-4	chr19	18713009	18713209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177640)	promoter-TSS (NM_177640)	-127.0	NM_177640	225995.0	Mm.28101	NM_177640	ENSMUSG00000047044	D030056L22Rik	-	RIKEN cDNA D030056L22 gene	protein-coding	8.62063646750933	8.73636161633527	8.65825578568612	8.80284247662181	8.74441332842779	8.84049528225121	8.89389058217816	8.58394459790511	0.0750162799119134	0.621544176944427	0.837879831266971
Merged-chr4-109665920-6	chr4	109665813	109666013	+	975.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007671)	promoter-TSS (NM_007671)	-541.0	NM_007671	12580.0	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin dependent kinase inhibitor 2C	protein-coding	4.02367310301643	4.11338266438949	4.07355476408472	4.18501055691806	4.07716969338393	4.14751705300792	4.05633037484489	4.37105033597888	0.148158191728467	0.715537540573744	0.886315721155829
Merged-chr16-91387019-3	chr16	91386912	91387112	+	735.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 4 of 7)	intron (NM_001347258, intron 4 of 7)	14229.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	3.85401408898225	3.46549683526377	3.902480991849	4.28275840002243	3.94835493367435	3.63914872243473	3.51062311442111	3.80260814020295	-0.51538386785932	0.328392228786953	0.6398683630487
Merged-chr8-11071321-3	chr8	11071234	11071434	+	934.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62904.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	3.90286628212584	3.84934381838405	4.37398111203959	4.53225641729386	3.52021476596134	3.97013578481871	3.88790905944515	4.13829826357524	-0.882335718227958	0.0828085624452124	0.312629084254364
Merged-chr3-9829247-4	chr3	9829165	9829365	+	837.837524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195031, intron 1 of 8)	MIRb|SINE|MIR	4414.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.00464844516492	3.97246559279007	4.00523396692567	3.8648380496723	4.2540812186366	4.02588956456497	4.12455623599377	3.95347708038598	0.394615186170186	0.342938465662859	0.6516462545027
Merged-chr17-86969801-4	chr17	86969746	86969946	+	938.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	6735.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	5.21277651853622	4.75264241658666	4.42109995613547	5.09695612382366	4.47290985432765	4.65033389582041	4.78319420402699	5.00737920979605	-0.359235960700628	0.35272363571092	0.659679630621423
Merged-chr6-48445015-3	chr6	48444893	48445093	+	926.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085415)	promoter-TSS (NM_001085415)	97.0	NM_001085415	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	4.00776003384828	3.85239046220254	4.60964359830363	4.17482457980814	3.71669343371665	4.28059421946097	3.99144961379912	4.23938016014083	-0.306624067961801	0.51714989555788	0.778683190795269
Merged-chr8-106140986-4	chr8	106140869	106141069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3995.0	NM_176838	77411.0	Mm.183003	NM_176838	ENSMUSG00000084128	Esrp2	9530027K23Rik|Rbm35b	epithelial splicing regulatory protein 2	protein-coding	5.6900525257528	5.74881027342429	5.38366025256746	5.66354154818281	5.54105480810648	6.02611725529113	5.50488230509636	5.5287423084084	0.0478018649666444	0.865855793009304	0.949727926552738
Merged-chr10-54132845-4	chr10	54132732	54132932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56910.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	5.97534652155671	6.28781620111052	5.92986348752001	6.17437814768232	6.49020655897187	6.41904473613277	6.15636188965621	5.9257215541872	0.255074742580222	0.315374544544885	0.627162984554532
Merged-chr16-20265263-2	chr16	20265163	20265363	+	749.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-23905.0	NM_198599	208158.0	Mm.326383	NM_198599	ENSMUSG00000041205	Map6d1	A330066I15Rik	MAP6 domain containing 1	protein-coding	3.00499745742834	2.91387903000423	3.00534117125716	3.12864579614907	3.03751866571993	3.11443624812976	3.27721452883085	3.2892469654635	0.621005209652052	0.276356164533305	0.588401849920445
Merged-chr4-47255824-4	chr4	47255731	47255931	+	825.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 6 of 39)	intron (NM_009928, intron 6 of 39)	47819.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	3.7209615755162	4.03611766344606	4.08677012172946	3.95287537284025	3.72691595283497	4.1160230999249	4.19678100065366	4.21363820849841	0.302576983836995	0.498305608557488	0.76759838054097
Merged-chr15-12322044-4	chr15	12321982	12322182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025673, intron 1 of 3)	CpG	586.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	5.85080814305424	5.72325263707685	6.3544367898086	5.66360820823537	5.96920549923831	6.07382762269585	5.91315947757342	5.72295655722283	0.0203102174390128	0.942290877923035	0.979071927591909
Merged-chr19-36834229-4	chr19	36834133	36834333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163635)	promoter-TSS (NM_001163635)	1.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	6.9202150245257	6.99917465584689	6.4340828164023	6.81156527342304	6.96373720849685	7.09784357733125	7.06735084265278	6.92948868755409	0.281996987037031	0.179653281757595	0.475868597135452
Merged-chr7-46958518-4	chr7	46958461	46958661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040695)	promoter-TSS (NM_001040695)	-43.0	NM_001040695	54122.0	Mm.1999	NM_016855	ENSMUSG00000043262	Uevld	8430408E05Rik|Attp	UEV and lactate/malate dehyrogenase domains	protein-coding	6.75513418251637	6.13556925938107	6.39198139731009	6.18114531136014	6.16227802713071	6.26368502885996	6.03397023790978	5.92174076102523	-0.418400191651725	0.104199637498773	0.354855078585962
Merged-chr1-20817391-3	chr1	20817315	20817515	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008563, exon 3 of 17)	exon (NM_008563, exon 3 of 17)	2897.0	NM_008563	17215.0	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	3.93778485947501	4.59749926603549	4.82580790511733	4.15032717009006	3.86245033430512	4.00462030076115	4.39747910396982	4.2892119050191	-0.646219726416977	0.171696783900031	0.465087374685055
Merged-chr1-91540542-4	chr1	91540454	91540654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039126)	promoter-TSS (NM_001039126)	-11.0	NM_001039126	65247.0	Mm.234152	NM_023046	ENSMUSG00000026311	Asb1	1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146	ankyrin repeat and SOCS box-containing 1	protein-coding	8.62149771388759	8.68841678438957	8.95326401280654	8.77264584498742	8.73676738559997	8.79118596524636	8.88122151950167	8.64470441183678	0.00119345931000802	0.99383176734999	0.997702270136287
Merged-chr11-35833429-4	chr11	35833365	35833565	+	900.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025936, intron 1 of 14)	intron (NM_025936, intron 1 of 14)	1063.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	4.09314952296363	3.84611516773044	3.90020760079236	4.06237694817513	4.1470219768671	4.2166537850013	3.98372120753267	3.89803519891152	0.227411475907402	0.592447735678184	0.822184390287336
Merged-chr15-79436768-4	chr15	79436648	79436848	+	965.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359863, intron 2 of 10)	intron (NM_001359863, intron 2 of 10)	5070.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	5.27998920352075	4.56774818138274	5.3355092810783	5.13553664117585	4.85650606227756	5.27417184019858	4.79094323940113	5.03161726653312	-0.217679051257393	0.543140225964897	0.794315192204876
Merged-chr13-22051141-4	chr13	22051062	22051262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	7932.0	NM_178198	319183.0	Mm.371766	NM_178198	ENSMUSG00000069300	Hist1h2bj	-	histone cluster 1, H2bj	protein-coding	6.52466577773756	6.16968544926557	6.35270375743723	6.57389254030016	6.56038050567507	6.58333651959171	6.5854871105545	6.45478895443198	0.179660210015722	0.415722644014719	0.709886482687489
Merged-chr6-38433782-4	chr6	38433695	38433895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177185)	promoter-TSS (NM_177185)	-130.0	NM_177185	320538.0	Mm.302831	NM_177185	ENSMUSG00000038538	Ubn2	2900060J04Rik|6030408G03Rik|BC060116|D130059P03Rik|mKIAA2030	ubinuclein 2	protein-coding	8.47650581372651	8.66512296446769	8.38995036352997	8.54103417165385	8.56978204659331	8.63538338847512	8.38784956150954	8.37915356566016	-0.0323193886309123	0.83783102744276	0.938470778590661
Merged-chr6-88306549-3	chr6	88306443	88306643	+	814.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149744, intron 3 of 5)	intron (NR_149744, intron 3 of 5)	84275.0	NM_019964	56691.0	Mm.272871	NM_019964	ENSMUSG00000048206	Dnajb8	1700016F14Rik|1700031F10Rik|AI326313|mDj6	DnaJ heat shock protein family (Hsp40) member B8	protein-coding	3.07923934838628	3.03166633650568	3.24970132632605	3.17793146372273	3.08124935954753	2.8407926193931	3.18300530788407	3.24784912552808	-0.159993787994509	0.783012587930732	0.915463993932762
Merged-chr9-15279969-4	chr9	15279878	15280078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144933)	promoter-TSS (NM_144933)	-111.0	NM_144933	234959.0	Mm.44151	NM_144933	ENSMUSG00000031935	Med17	77kDa|C330002H14Rik|Crsp6|Trap80	mediator complex subunit 17	protein-coding	8.13218834221892	8.05848849128274	8.20059719460018	8.27708009838747	8.26205014110621	8.19981965686304	8.33314696315158	7.98916505171888	0.0392290028619556	0.810832531854043	0.926854276252049
Merged-chr3-136230828-4	chr3	136230722	136230922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 6 of 16)	intron (NM_001033350, intron 6 of 16)	95244.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	6.09971123409678	5.89604974710873	5.62457397882124	5.80514635236702	5.76785400637787	6.0258431511248	5.0215589817702	6.07740336034589	-0.132681230404381	0.682514306705685	0.869873331847227
Merged-chr10-8251750-4	chr10	8251616	8251816	+	768.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 5 of 7)	intron (NM_177387, intron 5 of 7)	267109.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	4.40188655257135	4.01690798317433	3.98247531067515	4.04444886293101	4.10945744611447	4.44925377611927	4.59829408344749	4.27443222314074	0.609867387381793	0.141000810209043	0.417726490879441
Merged-chr3-144699234-4	chr3	144699149	144699349	+	878.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019464, intron 5 of 8)	intron (NM_019464, intron 5 of 8)	21086.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	3.95814291746018	3.84637202584843	4.26185071489478	3.77218254143977	4.13201258169588	4.08158402871785	3.7880613423099	3.80089464331154	0.0100784321088125	0.982396153884385	0.993718392413265
Merged-chr6-99242340-4	chr6	99242255	99242455	+	901.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	24160.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	4.12208821030149	4.03937166859021	4.07517004974014	4.43026743503276	3.89340701935444	4.19919195204291	4.23619858677815	4.07275838593643	-0.239153974267734	0.576408490282468	0.813520896079505
Merged-chr15-78942893-4	chr15	78942774	78942974	+	903.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133800)	TTS (NM_133800)	-4850.0	NM_001039156	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	4.31096218484441	3.82849062941679	4.31164435699921	3.98222491196718	4.30906349193332	4.30452403440845	4.29191298956387	4.42979799520879	0.554032460083007	0.175274866030501	0.46995478544412
Merged-chr2-58199619-4	chr2	58199488	58199688	+	840.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35614.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	3.97549072002211	3.98289441363963	3.5831145026961	4.19722139170073	4.03639642073365	3.82652432728875	4.13771987974578	4.11127457732856	0.176353069379928	0.703089321109493	0.880561870614917
Merged-chr2-91084663-4	chr2	91084573	91084773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12005.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	7.11627712169882	7.03146119048157	7.20815524950308	7.12865142473698	6.98308537972524	6.94584878662027	7.31588438477256	7.50270267336219	0.113037839859402	0.586436617306212	0.818630554682073
Merged-chr1-178369469-4	chr1	178369368	178369568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31653.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	5.57744546639146	5.88687474669477	5.60665506784423	5.95514824521997	6.0289382647298	5.66812979466315	5.97924507655995	5.78448256632678	0.157058570320055	0.556811750033255	0.802235069284239
Merged-chr1-39536198-2	chr1	39536098	39536298	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028043, exon 1 of 7)	exon (NM_028043, exon 1 of 7)	497.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	4.45291314621809	4.60805514737782	4.45360818479161	4.43786830914017	4.36394126347706	4.78755971758893	4.29769286066066	4.82397077151783	0.2096060644032	0.58076950291962	0.815952321187368
Merged-chr1-43139787-4	chr1	43139683	43139883	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010212, intron 3 of 5)	intron (NM_010212, intron 3 of 5)	24178.0	NM_010212	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	5.18647193054092	5.36915205460602	5.11853815832314	5.33732476307474	5.34601443666307	5.14899245663422	5.6738166529226	5.58255523293199	0.332824603612353	0.263142598151151	0.575005433591232
Merged-chr10-128096849-4	chr10	128096758	128096958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054078, intron 2 of 29)	CpG	4075.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	6.54704929885064	6.17805808124292	6.23853432324351	6.03797052568403	6.49578806129794	6.35521400019235	6.16718843203007	6.46495685740635	0.199454874920086	0.405687245252435	0.702435292267462
Merged-chr2-180710102-4	chr2	180710021	180710221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177852)	promoter-TSS (NM_177852)	-105.0	NM_001289652	76425.0	Mm.41464	NM_029607	ENSMUSG00000027573	Gid8	2310003C23Rik|4833420G11Rik|AI451474|Twa1	GID complex subunit 8	protein-coding	7.56143581924936	7.76108063939607	7.4499674780489	7.47729971435417	7.83359531957927	7.85139152607684	7.50755992140371	7.62758738616562	0.196503868903763	0.28396141390365	0.595980700602933
Merged-chr1-24612747-4	chr1	24612645	24612845	+	866.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25308.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	9.3176233860868	9.42368505067695	9.69665283502327	11.525534619655	5.38131210403425	6.10058466992864	5.65545343674304	5.43209027493849	-6.57023520191201	1	1
Merged-chr14-61668194-3	chr14	61668089	61668289	+	875.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	14184.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	4.19125233681339	3.85984536411321	3.82800060685974	4.05579706234319	3.79078410689776	3.83725253162683	3.70427092747134	4.02055791062732	-0.431507038428659	0.336139840207972	0.646244323954596
Merged-chr3-19522387-3	chr3	19522283	19522483	+	675.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025489, intron 1 of 4)	intron (NM_025489, intron 1 of 4)	-8864.0	NM_001163537	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	2.7652364933051	2.75533461383179	3.07967256373636	2.97110961348776	2.97235074431008	3.00816985771699	3.06745357465958	3.07796343376426	0.535865331910504	0.370288067110036	0.674447512188779
Merged-chr1-136136250-1	chr1	136136150	136136350	+	546.5	f0_c57.idr	intron (NM_001039472, intron 1 of 34)	URR1B|DNA|hAT-Charlie	4860.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	3.45678477099168	3.34436035991179	3.45720808905938	3.71682826609004	3.89593763461955	3.74349630674097	3.6629957539038	3.67606275861871	0.723850437226975	0.146701089182187	0.427216955523233
Merged-chr19-12016373-4	chr19	12016279	12016479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20361.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	5.67664508506219	5.80397483825489	5.73112604807947	5.72566591708821	6.06784091353113	6.00773415347689	6.10047728237232	6.23688087581762	0.588005942900182	0.0135127450334672	0.0975913080356957
Merged-chr10-80179583-1	chr10	80179483	80179683	+	629.0	f0_balb.idr	5' UTR (NM_007909, exon 1 of 4)	5' UTR (NM_007909, exon 1 of 4)	101.0	NM_007909	13637.0	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	3.33253127980233	2.96037080704133	3.11931110795825	3.12727895458529	2.99639283338326	3.10622249231629	2.98744875554776	3.05824674983882	-0.419667499008438	0.46597289803615	0.74626088086293
Merged-chr1-9772939-4	chr1	9772844	9773044	+	924.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24562.0	NM_173443	70675.0	Mm.274493	NM_173443	ENSMUSG00000045210	Vcpip1	4932442A08|5730421J18Rik|5730538E15Rik|VCIP135|mKIAA1850	valosin containing protein (p97)/p47 complex interacting protein 1	protein-coding	4.42604373735354	4.24080573363888	3.85694790908832	4.59932783046713	4.75288375350152	4.37433646174631	4.5255285388818	4.50519607792692	0.515698948874772	0.226019421733211	0.534601871393655
Merged-chr9-40642835-7	chr9	40642705	40642905	+	918.9541019999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43159.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	4.3166515403982	4.32852246786113	4.35655333158316	4.33995994359584	3.60821795450588	3.96293361073936	3.88122499261183	4.00032283813011	-1.29122654817246	0.00291473461961316	0.0312583105530259
Merged-chr10-91139675-4	chr10	91139583	91139783	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15720.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	5.08987747344909	5.48576114668425	5.27423146148071	5.1789445897977	5.08376439289356	5.0533394935985	4.89122191591079	4.56868804814546	-0.655419928292811	0.0483179601697406	0.226925009456769
Merged-chr11-82915153-3	chr11	82915051	82915251	+	703.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178680, intron 5 of 19)	intron (NM_178680, intron 5 of 19)	3898.0	NM_178680	217012.0	Mm.295205	NM_178680	ENSMUSG00000018845	Unc45b	AA445617|Cmya4|D230041A13Rik|Unc45	unc-45 myosin chaperone B	protein-coding	3.62332950294528	3.43825531937858	3.08726732144384	3.53610102296569	3.73337386350369	3.40357917995561	3.50815875709551	3.46638871504468	0.325729278429267	0.545473420947793	0.795940029589181
Merged-chr8-4370349-4	chr8	4370248	4370448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20760.0	NM_009138	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	6.7740881655424	6.76621578968115	6.74551605161258	6.97541585554957	6.93504147284588	6.95237237838921	7.28908442981	6.9483252071495	0.290123850359951	0.155869800200226	0.441705659838286
Merged-chr1-24100433-4	chr1	24100330	24100530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026604)	promoter-TSS (NM_026604)	-89.0	NM_026604	68187.0	Mm.87130	NM_026604	ENSMUSG00000026153	Fam135a	4921533L14Rik|AI256732|AI835491	family with sequence similarity 135, member A	protein-coding	7.7406121911819	7.34667108940879	7.62487170200616	7.60401563385549	7.24466960355967	7.15272184514456	7.42188491769357	6.8393148046084	-0.537792886847086	0.00850731577116365	0.0701346107569675
Merged-chr11-50207343-3	chr11	50207247	50207447	+	872.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290769, intron 3 of 7)	intron (NM_001290769, intron 3 of 7)	3473.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	3.467771380819	3.70160557147242	3.52553000756421	3.10383980840765	3.74559492107578	3.69862887836776	3.66781741147803	3.52359312865364	0.666600860066291	0.201689791737009	0.504156139969769
Merged-chr7-90426457-4	chr7	90426359	90426559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027298, exon 1 of 1)	5' UTR (NM_027298, exon 1 of 1)	147.0	NM_027298	70054.0	Mm.307198	NM_027298	ENSMUSG00000044362	Ccdc89	1700019B01Rik|AU022100|BOIP	coiled-coil domain containing 89	protein-coding	7.944097445257	7.73765684457783	7.52799506747361	8.00978832155341	7.69252846499021	7.45882208892064	7.69671688193863	7.36356005185629	-0.340991468427412	0.0796632148014219	0.305663508852021
Merged-chr2-77281211-4	chr2	77281139	77281339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175465)	promoter-TSS (NM_175465)	-647.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	7.25227615023844	7.60091509241489	7.30846874319144	7.44071456124157	7.66232951368857	7.52807102933598	7.5667004334354	7.52900469907843	0.216468549201782	0.225535730142857	0.533990000134436
Merged-chr5-63827181-4	chr5	63827077	63827277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	14682.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	7.14199868994061	6.99371661710773	7.69788757964932	7.53998570283074	7.4238270845587	7.20813858214037	7.42351747510835	7.59639118443171	0.0565288352023512	0.798688229240843	0.922183228204681
Merged-chr10-67052607-3	chr10	67052530	67052730	+	734.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	44358.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	3.352956258996	3.02422879297159	3.40737192581766	3.52467698363648	3.37753061266528	3.2867884441152	3.28488653625856	3.29535230138614	-0.125100724655007	0.820575675933218	0.931246110287796
Merged-chr2-132114184-4	chr2	132114111	132114311	+	844.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	(CAAAAA)n|Simple_repeat|Simple_repeat	30897.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	3.903623061109	3.89115949641486	4.23209690019988	3.62063718975531	4.37238176949129	4.27308549331223	3.83448492262747	4.09908613691224	0.657887044457616	0.151865618041115	0.435626776277446
Merged-chr2-21205709-4	chr2	21205619	21205819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027728)	promoter-TSS (NM_027728)	-5.0	NM_001001297	208967.0	Mm.268841	NM_177588	ENSMUSG00000048550	Thnsl1	AW413632	threonine synthase-like 1 (bacterial)	protein-coding	7.74173113491884	7.98084032368105	8.00687101065444	7.90768698575686	8.1541887567179	8.22460269037997	8.3803696830362	8.04162483198095	0.373966620134011	0.0251837611970829	0.149157547947258
Merged-chr2-128719507-4	chr2	128719421	128719621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	20606.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	6.46200691539632	6.60710885686132	6.44576164328576	6.91553439094947	6.52839941410208	6.65651830026208	6.34113447645043	6.35050167759667	-0.239744716114241	0.304234991284205	0.616902898459345
Merged-chr7-44247249-3	chr7	44247136	44247336	+	897.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025880, intron 1 of 5)	intron (NM_025880, intron 1 of 5)	514.0	NM_025880	668661.0	Mm.274492	NM_025880	ENSMUSG00000045411	2410002F23Rik	-	RIKEN cDNA 2410002F23 gene	protein-coding	4.42202978422502	4.73392442181582	4.96381459105728	4.46798225610133	4.68014047807457	4.13032166693331	4.31085379113419	4.70111149446929	-0.379259011749006	0.352100878499611	0.659311427742586
Merged-chr15-57898138-4	chr15	57898028	57898228	+	981.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5710.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	4.27359187932254	4.53684507256491	4.59379345174852	4.78623612192138	4.64462775909374	4.40330686924591	4.88965685218109	4.87878214214733	0.304498580137706	0.422356586376558	0.714643769741056
Merged-chr7-140948397-4	chr7	140948227	140948427	+	909.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053088)	TTS (NM_053088)	1912.0	NM_053088	73835.0	Mm.389989	NM_053088	ENSMUSG00000025489	Ifitm5	1110003J06Rik|AW213665|Bril|DSPA1|Hrmp1|Hrtm1	interferon induced transmembrane protein 5	protein-coding	3.40543247525451	3.24059996719842	3.57568013970054	3.90793531607647	3.41319702683528	3.45761953305471	3.70936838269699	3.67541925706242	-0.0129771842482601	0.981107887247238	0.9931774370164
Merged-chr18-39251097-4	chr18	39250974	39251174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 17 of 21)	intron (NM_001361073, intron 17 of 21)	236171.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	7.15415065405917	7.09408997743626	7.06524005824092	6.90790596992984	6.90778240514798	6.86357510538996	6.86828464545543	6.58269623691009	-0.326902518968604	0.102744926301382	0.352063201683377
Merged-chr13-55100223-4	chr13	55100045	55100245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293660, intron 1 of 12)	CpG	155.0	NR_121592	20184.0	Mm.259301	NM_011307	ENSMUSG00000025878	Uimc1	9430016E08Rik|D330018D10Rik|D630032M02Rik|RIP110|Rxrip110	ubiquitin interaction motif containing 1	protein-coding	5.88288448064017	5.82320903798481	5.88392046580466	5.74687113398335	5.7149919373033	6.08114299433494	5.73475439637642	6.1090684116618	0.137925108789447	0.590166107434303	0.820794336760513
Merged-chr6-53589943-4	chr6	53589792	53589992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172728, intron 1 of 6)	intron (NM_172728, intron 1 of 6)	16518.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	6.22206896843799	5.98056522819352	6.10575615663016	6.01674949671998	6.04714581051316	6.35890736533854	6.24580415868507	5.90261580662801	0.104179216723761	0.666485523175315	0.862000851460164
Merged-chr7-35554923-4	chr7	35554837	35555037	+	968.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033080, intron 1 of 2)	intron (NM_033080, intron 1 of 2)	991.0	NM_033080	110959.0	Mm.410206	NM_033080	ENSMUSG00000034875	Nudt19	D7Rp2|D7Rp2-r|D7Rp2-s|D7Rp2e|RP2-r|RP2-s	nudix (nucleoside diphosphate linked moiety X)-type motif 19	protein-coding	4.83725284207377	4.55744163064726	5.00523864166521	4.86173312371915	4.81782554717676	4.55056184675374	4.98059400074586	4.72288539983561	-0.0890323326787348	0.797408434510709	0.921647424006848
Merged-chr4-156198063-4	chr4	156197991	156198191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021604)	promoter-TSS (NM_021604)	-603.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	7.57065468605295	8.02200022717356	7.35129403449139	7.74420097982979	7.93834877179591	7.96830652335648	8.19008283380125	7.47125932158367	0.283664771656068	0.202975527979853	0.505549552315696
Merged-chr15-99705755-4	chr15	99705653	99705853	+	839.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031842, intron 6 of 12)	intron (NM_031842, intron 6 of 12)	3466.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	4.18756048780953	4.18833371668928	3.90633106948407	4.02942458374879	3.99289706287682	3.91729480949366	3.78252254845444	4.22692305269605	-0.241386240415435	0.577470293678494	0.814166268489505
Merged-chr6-120037098-4	chr6	120037011	120037211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001199083, exon 1 of 28)	exon (NM_001199083, exon 1 of 28)	1544.0	NM_001185020	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	5.87119033412556	6.07065627902027	5.89570048021217	5.88351728004758	6.23609849800485	5.84504359505128	6.1897860060024	5.6904819176863	0.143197044175471	0.581674336534968	0.816420227529328
Merged-chr13-42015693-4	chr13	42015597	42015797	+	933.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36324.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	4.56980911518295	4.8556039067567	4.34938844776954	4.4189569722027	4.56560344118855	4.82101654632857	4.80367546990074	4.29776223902378	0.165947229391898	0.665753783549868	0.861618222095799
Merged-chr10-18188739-4	chr10	18188626	18188826	+	858.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195036, intron 3 of 20)	L1MC5|LINE|L1	22164.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	4.10425897705846	3.89997887744514	4.19841524008134	4.30381760733623	4.15305879046322	3.95859408283463	4.42247993493511	4.40307532049305	0.255305335904408	0.546982687775406	0.796650167361309
Merged-chr9-45272377-4	chr9	45272284	45272484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3235.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	6.35793773212097	6.76369470489614	6.34215173486164	5.89261491018546	5.98957326586986	6.02644762682144	5.81796563397059	5.53255962169456	-0.789463211244647	0.00713260662580802	0.0617704492471951
Merged-chr2-144219454-4	chr2	144219320	144219520	+	879.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30130.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	3.6107884666494	3.80132624889499	3.44267256812147	3.45941931527327	3.56584194932159	3.67337417948006	3.78923529431174	3.44098711450706	0.126909097719533	0.797373642302488	0.921630258034137
Merged-chr6-87536295-4	chr6	87536185	87536385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3026.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	5.42861845067682	5.55461737381637	5.48728518207451	5.80455424085112	5.20522091202932	5.31245418898872	5.51458374084475	5.94908488861496	-0.115687146717365	0.710463920544668	0.884137043585535
Merged-chr14-33392975-3	chr14	33392873	33393073	+	810.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016700, exon 6 of 12)	exon (NM_016700, exon 6 of 12)	18051.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	3.70342439963738	3.61276177934105	3.53431991356197	3.94239507162168	3.5912806989638	3.52320495635388	4.12665431333874	3.80358818849535	0.183069042344608	0.718090382946864	0.887335796877561
Merged-chr3-144677676-4	chr3	144677602	144677802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42633.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	6.89317269379813	6.67539142617116	6.74647961189001	6.92811691043997	6.67723321209585	6.35906547119563	6.69785019168962	6.5241545205225	-0.346150524637341	0.101211839545193	0.349224757719099
Merged-chr5-43737698-3	chr5	43737626	43737826	+	755.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359906, intron 36 of 37)	intron (NM_001359906, intron 36 of 37)	44423.0	NM_001159963	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	3.78919806673053	3.62644732286854	4.23098442561766	4.3334919574155	2.8440532529843	3.38847877278492	3.11116560413747	3.11904560938566	-3.70809232469758	4.95236893401288e-07	1.83787626879094e-05
Merged-chr6-149355333-1	chr6	149355233	149355433	+	947.0	f0_c57.idr	Intergenic	Intergenic	45919.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	3.43973810936276	3.33339872603295	3.57824628367503	3.44824263068439	4.58841160610521	4.24617509597213	4.4061445542932	4.19925727791863	2.56667530931971	4.13364729756527e-08	1.93444366202103e-06
Merged-chr10-87830191-4	chr10	87830123	87830323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	-28042.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	6.90491264290252	6.97553764185255	7.14309129365353	7.05082260016679	6.61627636344067	6.72395295224223	6.79061379874084	6.60886561218685	-0.477923730623492	0.0148095332318406	0.103885657426745
Merged-chr6-145801078-3	chr6	145800981	145801181	+	960.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7302.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	3.62655374360338	3.90627352181462	3.94566551150123	3.81364047150829	3.15477978847402	3.38756896851073	3.32720400021973	3.20217642672049	-2.0134762575717	0.000236718641117496	0.00417477605453474
Merged-chr16-38394374-4	chr16	38394279	38394479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32189.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	8.16069276980989	8.19389743378737	8.62979550617598	8.1307640578741	7.80723796853866	8.01003952125335	8.08042682749181	7.70310089619409	-0.493609847091901	0.0100411333945636	0.0791438987211331
Merged-chr5-101968105-4	chr5	101968010	101968210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 5 of 66)	MTD|LTR|ERVL-MaLR	101811.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	7.02093322376988	7.35351794649191	6.9967465329947	7.14058113610452	7.06902570461949	6.99553549814586	7.10615471987198	7.25674625539491	-0.0411052774381547	0.832440184126772	0.935835439369668
Merged-chr4-154944397-4	chr4	154944285	154944485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16308.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	7.87898579324327	8.3636875962858	7.78147579254318	7.15370707305412	8.00563567216835	8.3148124449053	7.87812485563346	7.61614074343662	0.149888822211823	0.572697448436433	0.811289091315863
Merged-chr17-67346589-2	chr17	67346489	67346689	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	7870.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	3.11127443824942	3.11203318724976	3.04905884442045	2.97189189107553	3.20385671481449	3.28304766398511	3.26972226860623	3.22672524264424	0.739597538224285	0.170374594410664	0.463556181168789
Merged-chr5-19896053-4	chr5	19895969	19896169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 2 of 22)	MTD|LTR|ERVL-MaLR	-11449.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	7.1411930670441	6.70365541888345	7.27489716708291	7.60336165285738	7.18836976848042	7.37637134712287	7.47546660828854	6.85115217264108	0.0163356948241711	0.948339190182127	0.981388084353081
Merged-chr13-8866889-4	chr13	8866778	8866978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039388, intron 1 of 13)	intron (NM_001039388, intron 1 of 13)	4166.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	5.77113413927555	6.04824261982197	6.10409439749631	6.33457242769965	6.32006408888678	6.39839300043191	5.98703910247367	6.32793688767341	0.258792655920467	0.309956025969146	0.622114309925992
Merged-chr19-5882174-4	chr19	5882062	5882262	+	960.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134154, intron 4 of 5)	intron (NM_134154, intron 4 of 5)	4340.0	NM_001361974	107375.0	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	4.66177523290761	5.09243345122952	5.1252519278409	5.2445305290717	4.9872143474321	4.75331949677516	4.87359933248124	4.47631070061837	-0.528641153863197	0.139177752560901	0.414829079583451
Merged-chr2-162939812-4	chr2	162939721	162939921	+	986.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3644.0	NM_001081338	241764.0	Mm.187086	NM_001081338	ENSMUSG00000035576	L3mbtl1	C630004G01|L3mbtl|mKIAA0681	L3MBTL1 histone methyl-lysine binding protein	protein-coding	5.63546567917792	5.27481891556974	5.79963564892449	5.66509052349367	5.42551628000174	5.62406706818977	5.02128428867651	5.63245393078916	-0.278485947949696	0.361281166207894	0.666639847816246
Merged-chr5-16947651-2	chr5	16947551	16947751	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	393750.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	2.99867737727643	2.60227881182038	2.87074837951251	3.09664539132697	3.23601193178111	3.04478452385053	3.04724366790774	3.16859323256531	0.873340273538501	0.175400217148353	0.470111788570704
Merged-chr12-85375004-4	chr12	85374804	85375004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026775)	promoter-TSS (NM_026775)	-187.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	6.09800561380078	6.21162718162243	6.07795762517371	5.63192800047957	6.10772406099476	6.68077902913581	6.00368773610577	6.37509732816303	0.464958990536746	0.0939405100006639	0.335285140717909
Merged-chr6-71442236-4	chr6	71442158	71442358	+	926.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1621.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	4.74291667355485	4.83180971417586	4.5879459887616	4.80746017512216	4.79975881212222	4.49213382072958	4.60746352195971	4.62569675397649	-0.227581029962237	0.511722282357628	0.775628687274991
Merged-chr2-160157291-4	chr2	160157167	160157367	+	962.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140614.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	5.95879907413951	5.86857453062988	6.21427561464242	5.7982061852232	5.47192097563696	5.39351477194508	4.99329764908055	5.37748944077155	-1.06926645780931	0.000229788624175792	0.00407680071789849
Merged-chr2-131494626-3	chr2	131494573	131494773	+	922.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177840, intron 1 of 3)	intron (NM_001177840, intron 1 of 3)	2811.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	3.57522613120559	3.19570501547924	3.57575710700077	3.45343176177572	3.28744825025807	3.35331062991947	3.45957211396695	3.36077197888623	-0.319515428702673	0.541103950485547	0.79305195415756
Merged-chr7-19077296-1	chr7	19077196	19077396	+	1000.0	f1_balb.idr	intron (NM_010058, intron 1 of 4)	intron (NM_010058, intron 1 of 4)	1096.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	3.19107340132546	3.09571057390092	3.12110419656934	3.1673459877385	3.94555996371148	3.55941062049482	3.63527757417139	3.78684378132755	2.02382641796858	0.00011405959177456	0.00226651247429409
Merged-chr2-159593021-4	chr2	159592925	159593125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-354316.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	6.25705366321752	5.89177296493489	5.72101752954509	6.29875980557149	5.47098940160359	5.78870070273637	6.15441682534785	6.1054801779018	-0.273948223410817	0.352715674351607	0.659679630621423
Merged-chr17-71190758-4	chr17	71190557	71190757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	6679.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	4.27828998017173	4.10414928449336	4.44782908774279	4.04692674911767	4.37903515441093	4.31213579486518	4.42704638348417	4.48378816728657	0.45736572295236	0.239151791955592	0.549612081867723
Merged-chr11-115005296-4	chr11	115005190	115005390	+	907.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3410.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	4.49071170590253	4.03860086991821	4.11619469924237	4.16654281477369	4.29551302018892	3.9090351316772	4.23495647430048	4.3354806246771	-6.8236897776211e-05	0.999869836795361	0.999912012360248
Merged-chr19-4283266-4	chr19	4283167	4283367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026720)	promoter-TSS (NM_026720)	-130.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	8.11155172629718	8.00280778345186	7.52552384912059	7.47733863182133	7.92616309953847	8.16406012346807	7.87305673006271	7.50098623491323	0.106664246298843	0.637507755402795	0.846796202621646
Merged-chr3-90265110-4	chr3	90265018	90265218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356483)	promoter-TSS (NM_001356483)	-117.0	NM_001356483	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	6.76312700623596	6.89449863144766	6.93073299318906	6.98646499610533	6.99421937542746	6.86484493403629	6.93396695912093	7.10682550912651	0.106195896342071	0.581850467538543	0.816420227529328
Merged-chr11-117655534-3	chr11	117655416	117655616	+	835.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 1 of 21)	CpG	1227.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	3.64539692252831	3.73818536298248	3.59574661955704	3.35808125306454	3.50324704689652	3.42421933548514	3.16765027373669	3.59364991262744	-0.502835320464797	0.343050006926333	0.651771205504203
Merged-chr3-65527809-1	chr3	65527709	65527909	+	1000.0	f0_balb.idr	promoter-TSS (NM_178892)	promoter-TSS (NM_178892)	-638.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	6.4747690653968	6.20051026627955	6.27552780730678	6.45565897747322	6.36857552298372	6.60057739207877	6.58518977517431	6.83394653232271	0.348793606267438	0.124520041849026	0.39182460706124
Merged-chr8-120511033-4	chr8	120510933	120511133	+	940.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	PB1D7|SINE|Alu	22167.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	5.01160099204416	5.46321420718914	4.61753831155705	4.6080532574941	5.46321553842468	4.96806259930461	4.84527678359016	4.93914528356089	0.221803289384763	0.572520026528567	0.811251013052168
Merged-chr10-95298620-4	chr10	95298494	95298694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	25115.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	4.83268701071011	5.21301772839094	4.87078673222854	4.64594888464759	5.18598144482727	4.76356453749997	4.84759188134318	5.00656066265303	0.145350480493548	0.676540207654036	0.867197108600875
Merged-chr9-105122521-2	chr9	105122428	105122628	+	751.666626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	9277.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	3.72351258229122	3.91666642186877	3.5101494607263	3.86409791116007	3.16104438833115	3.50370122914989	3.49698220905679	3.72183393120602	-0.931840343945533	0.0788967242208907	0.303966978799393
Merged-chr8-61643390-4	chr8	61643329	61643529	+	695.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-52260.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	3.84768933265829	3.60794693068995	3.52944828761053	3.82420480574806	3.77928455211343	3.51821711974639	4.08292976772799	3.58643259954332	0.144061975082177	0.770685398213199	0.910265273875382
Merged-chr15-53399307-4	chr15	53399224	53399424	+	786.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-53141.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	3.35097462862824	3.28729338978062	3.40752328991054	3.69304734451724	3.34067645516005	3.20830261208466	3.49832975309483	3.34967788349945	-0.363613858048801	0.500230761900287	0.76882720248101
Merged-chr8-75031571-4	chr8	75031458	75031658	+	912.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001316753, exon 12 of 12)	3' UTR (NM_001316753, exon 12 of 12)	-2128.0	NM_001136259	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	4.47717517804318	4.67243005349477	5.01678288732533	5.07944275279459	4.53501814052279	4.41524316578466	4.45790590847832	4.51897170463438	-0.785808601671353	0.0363107550121996	0.189525792404001
Merged-chr5-3474135-1	chr5	3474035	3474235	+	770.5	f0_balb.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-69698.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	3.31445504811827	3.14584100002975	3.56707616710534	3.5458646503202	2.97518081090683	3.03736746435643	3.35582351912555	3.19657271030818	-0.991840916109613	0.0890828610639594	0.325647305053022
Merged-chr2-73371719-4	chr2	73371623	73371823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276444, intron 4 of 15)	intron (NM_001276444, intron 4 of 15)	14757.0	NM_001276443	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	5.67658893429461	5.55168440806823	5.62391547102647	6.11205344384475	5.9547518180655	5.42686051806268	5.96965310297318	5.97562272044557	0.122230896154155	0.678633062559288	0.8681208945003
Merged-chr11-80085867-4	chr11	80085760	80085960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3540.0	NM_001029856	237877.0	Mm.89551	NM_001029856	ENSMUSG00000017550	Atad5	C130052G03Rik|FRAG1|Gm17	ATPase family, AAA domain containing 5	protein-coding	6.2150674699585	6.05192118768568	5.90829267251083	6.27143488820072	5.95759579003288	5.51495801066631	6.05069334330458	5.97193400206339	-0.366015625716282	0.158025144537411	0.444930438707523
Merged-chr7-27804820-4	chr7	27804722	27804922	+	916.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2374.0	NM_027703	71163.0	Mm.440493	NM_027703	ENSMUSG00000030604	Zfp626	4833408D11Rik|4933426I21Rik|7630402I04Rik	zinc finger protein 626	protein-coding	4.66563249081831	4.59998254917111	4.91570033083295	4.40127611825884	4.63500856738652	4.63092085367314	5.04201211354701	4.58222272265332	0.195832303442978	0.595886787547586	0.824220761703025
Merged-chr4-135973837-4	chr4	135973710	135973910	+	959.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1216.0	NM_011942	26394.0	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	5.15534062444921	5.43174391530985	4.87748159430682	5.05322871113957	5.31305015326371	5.26553594096957	4.60023759622047	4.94972714933196	-0.141458796672154	0.689374305714004	0.873346510748725
Merged-chr4-123750975-4	chr4	123750858	123751058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023423)	promoter-TSS (NM_023423)	-659.0	NM_023423	68050.0	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	6.49126260220787	6.62395828828834	6.10609561195316	6.38797496488386	6.06225639679641	6.23976909230653	6.39448778411783	5.96568793726482	-0.370587278975359	0.128967987195724	0.399539187004023
Merged-chr12-112861008-3	chr12	112860900	112861100	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019925)	promoter-TSS (NM_019925)	-84.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	4.40958048800396	4.17496383299683	3.64782937949126	3.67609473382527	4.10142336398203	3.49798561231381	3.63436368571728	4.06072423007383	-0.439214877611534	0.417652864667741	0.711417605932264
Merged-chr10-76442853-4	chr10	76442757	76442957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282992)	promoter-TSS (NM_001282992)	55.0	NM_008787	18541.0	Mm.251794	NM_008787	ENSMUSG00000001151	Pcnt	AW476095|C86676|KEN|Pcnt2|kendrin|m239Asp|m275Asp	pericentrin (kendrin)	protein-coding	8.9232257826826	9.11285470857714	9.07264401482466	9.05426243985583	8.82017121410301	8.93857956004636	9.13135412454873	8.79314509407287	-0.145525255045436	0.338663669660122	0.648109446558985
Merged-chr13-41550733-4	chr13	41550631	41550831	+	844.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B3|LTR|ERVL	-55485.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	3.99477828278217	3.69515259616299	4.46233461712411	3.95577730375503	3.86316175578255	4.22005957939147	4.20955315009572	4.30889856727761	0.272762532485623	0.554358110683599	0.800735743340799
Merged-chr1-85687597-2	chr1	85687490	85687690	+	843.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_013673, intron 11 of 19)	intron (NM_013673, intron 11 of 19)	37602.0	NM_001313714	20684.0	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	3.63052772208408	3.35225164049814	3.26313787131273	3.20298822921612	3.4021372215138	3.24656689435779	3.47164900147554	3.261522519265	-0.0435607143567056	0.935312162688743	0.976553886506881
Merged-chr1-143922084-2	chr1	143921982	143922182	+	607.5	f0_balb.idr|f0_c57.idr	Intergenic	B3A|SINE|B2	82067.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	3.37471561874378	3.35720253081857	3.48560964008053	3.44807834746101	3.69899317668577	3.48853612221941	3.11281210252087	3.4297116924131	0.134387320743394	0.801837146193961	0.923559097579232
Merged-chr12-33035938-3	chr12	33035833	33036033	+	799.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024478, intron 18 of 19)	intron (NM_001024478, intron 18 of 19)	56942.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	3.68097037478408	3.57477569480024	3.58380577007739	3.60732505136546	3.34185860343061	3.34784201477713	3.2898045136035	3.47602222780516	-0.850376515161803	0.0923012780876382	0.332334092417421
Merged-chr13-6241654-4	chr13	6241567	6241767	+	883.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-306490.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	4.84184353919904	4.39065250175652	4.66503344475276	5.1225034456013	4.38347004236369	4.39519075559194	4.60468674015817	4.49968923759888	-0.716954904154753	0.0655103880487724	0.272466432823429
Merged-chr6-124993539-4	chr6	124993422	124993622	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3198.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	6.16315962628351	5.80110149690134	5.98189870074387	6.13338188014143	5.45360889067204	5.21973259202594	4.69145698952692	5.25600100442976	-1.42044617970286	6.30298675240109e-06	0.000182522495544816
Merged-chr15-91190267-3	chr15	91190198	91190398	+	793.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011994, intron 1 of 9)	intron (NM_011994, intron 1 of 9)	1709.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	3.2688881389796	3.31165185072734	3.5379028085666	3.41698983503601	3.45970576532379	3.25300080351457	3.19778235637953	3.43563853260723	-0.14986821531203	0.776485012511516	0.912932991254018
Merged-chr2-154703041-4	chr2	154702966	154703166	+	682.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46040.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	3.91616017441922	3.92617877522621	3.86623911383253	3.47247197939904	3.96002290517188	4.18267174031379	3.62894443480416	4.18117885590442	0.580873567200271	0.224798012916435	0.533254215616452
Merged-chr15-6909813-4	chr15	6909765	6909965	+	937.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35552.0	NM_001310469	18414.0	Mm.10760	NM_011019	ENSMUSG00000022146	Osmr	OSMRB	oncostatin M receptor	protein-coding	4.54966131745824	4.67984770520296	4.6363792701906	4.71071547471928	5.08802740809746	4.6374926544941	4.90824560842798	4.99313037656524	0.56433617142841	0.0947970799600962	0.336870108015143
Merged-chr1-80659994-1	chr1	80659894	80660094	+	597.0	f0_balb.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	5358.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	3.42754386934552	3.39095520957014	3.25861814332793	3.42917241174573	3.39671973760246	3.1731760200107	3.12248869728628	3.57523059943173	-0.170016520096549	0.753795851527822	0.9028447998413
Merged-chr5-113703549-3	chr5	113703449	113703649	+	957.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033216, intron 2 of 2)	intron (NR_033216, intron 2 of 2)	21223.0	NR_033216	381707.0	Mm.159016	NR_033216	ENSMUSG00000042184	1700069L16Rik	1700096P12Rik	RIKEN cDNA 1700069L16 gene	ncRNA	3.83070472929947	3.8133633941314	4.10460393495269	3.99522573605112	3.62866625131206	3.46106740384653	3.86462486876781	4.01738484403359	-0.532223568562745	0.265858068719462	0.57757024396846
Merged-chr2-120730879-3	chr2	120730813	120731013	+	888.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026891, exon 2 of 28)	exon (NM_026891, exon 2 of 28)	604.0	NM_026891	68968.0	Mm.2289	NM_026891	ENSMUSG00000027284	Cdan1	1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI	congenital dyserythropoietic anemia, type I (human)	protein-coding	2.73179839380585	2.79333979122453	2.87388353492336	3.04777931683606	3.26434636273979	3.11139550544979	3.05034194259061	3.22389668130806	1.16744582124596	0.0591484035356905	0.256275370849061
Merged-chr2-105674007-4	chr2	105673930	105674130	+	940.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001244198, intron 1 of 12)	intron (NM_001244198, intron 1 of 12)	-1714.0	NM_001244200	18508.0	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	4.56147505160572	4.60957503787601	4.56219313769232	4.94909162722011	4.69006878068319	4.30537753454389	4.54141931303358	4.91910804042651	-0.131047386139826	0.731013470856707	0.893394535729008
Merged-chr19-53313877-4	chr19	53313789	53313989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	2444.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	6.05372309531024	6.17721469980843	6.43639960456926	6.54323351449496	6.24437826850569	6.31735615731295	6.41969880681813	5.90942229843609	-0.141393552815533	0.574549385149414	0.81246206040379
Merged-chr17-86802938-3	chr17	86802839	86803039	+	788.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010137, intron 2 of 15)	intron (NM_010137, intron 2 of 15)	49075.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	3.73359763044353	3.49713970046075	3.73416302785936	3.85285969235422	3.24818607540591	3.25858883128801	3.56943150967175	3.58184322254274	-0.981726767835717	0.0604172933019288	0.259641521459759
Merged-chr9-62058281-4	chr9	62058187	62058387	+	941.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_033320, exon 3 of 3)	3' UTR (NM_033320, exon 3 of 3)	12319.0	NM_033320	93683.0	Mm.24411	NM_033320	ENSMUSG00000032252	Glce	1110017N23Rik|AI747411|C130034A12Rik|Hsepi	glucuronyl C5-epimerase	protein-coding	4.29062775523702	4.23246925758268	4.29127934272249	4.68160977075832	4.42919902708894	4.1142134054605	4.18076974939321	4.41602170406707	-0.254905273337444	0.534235397617347	0.789066961676578
Merged-chr7-130117342-1	chr7	130117242	130117442	+	662.0	f0_balb.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	149466.0	NM_010207	14183.0	Mm.16340	NM_010207	ENSMUSG00000030849	Fgfr2	AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFR|KGFRTr|svs	fibroblast growth factor receptor 2	protein-coding	3.42713486822475	3.52666281104302	3.42759549623025	3.45541409516141	3.38850344644645	3.15382844502656	3.79000382665204	3.18279255281123	-0.179624470669759	0.744324206384237	0.899257286839234
Merged-chr5-101968675-4	chr5	101968580	101968780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 5 of 66)	intron (NM_172882, intron 5 of 66)	101241.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	7.92282280220113	8.10315029749425	8.10809403709833	8.2455130452431	8.1069578681085	8.2273165304099	8.21269849346008	8.07063689205946	0.0600174774560868	0.711330232884772	0.884405406929924
Merged-chr8-70598506-4	chr8	70598410	70598610	+	883.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133772, intron 14 of 16)	CpG	4029.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	4.12920810639754	4.09110094544209	4.17763882257453	3.91713876419992	4.3294200496718	4.20556822510472	4.44867816569702	4.46706415654527	0.744582480835948	0.0576812864641305	0.252068780036244
Merged-chr5-121500916-4	chr5	121500792	121500992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172125, exon 1 of 1)	exon (NM_172125, exon 1 of 1)	2088.0	NM_172125	280667.0	Mm.444773	NM_172125	ENSMUSG00000062438	Adam1b	Adam1|Ftna	a disintegrin and metallopeptidase domain 1b	protein-coding	5.65715509230841	5.85995781868067	5.75554381020854	5.4400664593953	5.3504095395326	5.67217851007645	5.62950236299624	5.57588501515626	-0.205615833245612	0.461492408357743	0.743289746901092
Merged-chr1-118559722-4	chr1	118559612	118559812	+	908.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 30 of 39)	intron (NM_001359330, intron 30 of 39)	-68233.0	NM_023755	81879.0	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	4.38213028071863	4.30763379715426	4.61309847056902	4.63498028370255	4.03300258818551	3.99799353978574	4.48199953009885	4.24723027673543	-0.716905665354364	0.0793950147585371	0.305061147395299
Merged-chr4-12424182-4	chr4	12424081	12424281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-252166.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	6.01784123807291	6.03735435117355	6.37332077051774	6.61208630922989	6.52508548732598	6.36473284309039	6.01057822518344	5.87057402598917	-0.105925260467983	0.706755049334173	0.882215762445699
Merged-chr7-97480922-4	chr7	97480812	97481012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027256)	promoter-TSS (NM_027256)	-44.0	NM_027256	101861.0	Mm.27383	NM_027256	ENSMUSG00000025133	Ints4	2610034N24Rik|AA692684|AW493223	integrator complex subunit 4	protein-coding	7.11496570998982	6.86807233249187	7.02394298406026	7.07148932412269	6.70498655531022	6.79347659888961	6.82241153006709	6.89276886005481	-0.313193723042973	0.106253089769874	0.359240505270803
Merged-chr1-60658573-3	chr1	60658430	60658630	+	890.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-87858.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	3.46468294313511	3.24060872045813	3.61471578681796	3.67841663911152	3.31262098201575	3.34533934092366	3.22315164595145	3.29402263218755	-0.787757992586649	0.142188637364808	0.419621253741434
Merged-chr8-70869670-4	chr8	70869586	70869786	+	983.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026964, intron 2 of 4)	intron (NM_026964, intron 2 of 4)	3804.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	5.10874804786393	4.66340707261789	4.84383324961761	4.55088832239091	4.89005034693934	4.98105823732199	5.19755089254765	4.72479505852663	0.335130859026918	0.340545058178627	0.649679556785898
Merged-chr3-36572156-4	chr3	36572051	36572251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027810)	TTS (NM_027810)	887.0	NM_009828	12428.0	Mm.4189	NM_009828	ENSMUSG00000027715	Ccna2	AA408589|Ccn-1|Ccn1|Ccna|CycA2|Cyca	cyclin A2	protein-coding	9.11117606888886	9.20174005124029	9.31176279057459	9.25997654332231	9.05400782594332	9.27024836621966	9.56363676458794	8.97458329970129	0.0144681578328607	0.933562632827334	0.976042836339903
Merged-chr2-38602164-3	chr2	38602065	38602265	+	957.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011187, intron 6 of 7)	intron (NM_011187, intron 6 of 7)	41741.0	NM_011187	19177.0	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	3.89820831933352	3.33473158108808	4.0382853586916	4.34877800404881	3.78970070087309	3.8052773071197	3.67173840635767	4.03572707736056	-0.369423758998874	0.494658538243158	0.765224301099017
Merged-chr5-20812090-4	chr5	20811986	20812186	+	877.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 3 of 17)	intron (NM_172992, intron 3 of 17)	70038.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	4.19542628463596	4.51172226491942	4.65743802581222	5.02235210666153	4.2541911990355	4.4220268680794	4.01982551354195	4.19356307037039	-0.977171189669557	0.0227155365929468	0.139241231411416
Merged-chr18-30530306-4	chr18	30530199	30530399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	257434.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	5.73903253648977	5.47047221994351	5.69048223096244	5.76739067639327	5.75517274528267	5.98422738622217	5.38203447045449	5.76001007756029	0.0988484267190897	0.719570410962532	0.888022825078143
Merged-chr4-148075541-4	chr4	148075432	148075632	+	931.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12532.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	4.85282236076398	4.40118217180938	4.46962295677647	4.49300782906606	4.70352304385281	4.68869058726331	4.53536625260861	4.91476342920144	0.343363960629445	0.340802447322387	0.64989490965976
Merged-chr7-97174365-4	chr7	97174262	97174462	+	826.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	L1MA4A|LINE|L1	92611.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	4.92502238769246	4.70084915373053	4.44750071567195	4.59086120631426	4.71848164488829	4.27547049370889	4.55392418469008	4.53100392732936	-0.291170497046414	0.436724300405521	0.725278104435332
Merged-chr10-121586836-4	chr10	121586730	121586930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019786)	promoter-TSS (NM_019786)	-36.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	8.24770240477672	8.65512653227626	8.47220405108044	8.32060038331564	8.57583788150587	8.37808885695154	8.57389775940877	8.42105416995483	0.076410532155656	0.645444815190535	0.850934142345746
Merged-chr5-124621626-4	chr5	124621525	124621725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026486, intron 13 of 18)	L1MB5|LINE|L1	-7427.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	5.60986728641619	5.72252476001343	5.58317222766768	5.69908538766343	5.99903962651369	5.75946518838236	5.80629656481621	5.8545250178899	0.336292601473758	0.180275207712706	0.476611410681675
Merged-chr11-68472668-4	chr11	68472585	68472785	+	885.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	-30334.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	4.90811558413043	4.65356674003873	4.58483263113949	4.00210566622942	4.69347634655232	4.54173227827909	5.00437741734805	4.49724289576784	0.291061292051734	0.487922214573925	0.76110740386327
Merged-chr1-138517166-3	chr1	138517077	138517277	+	821.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 5 of 9)	ID_B1|SINE|B4	102580.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	3.48662153787584	3.45635812505492	3.73708794124199	3.81337760423242	3.31702021612206	3.42264628010801	3.52698235065662	3.24361200109393	-0.886256661463146	0.0906208066790233	0.328761386269429
Merged-chr17-5849662-4	chr17	5849515	5849715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 1 of 17)	intron (NM_025664, intron 1 of 17)	8235.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	6.11849884982265	6.63714632811187	5.40307275951876	5.37430548553029	6.46471132037483	6.3521823343913	5.50499655739132	5.58945570640545	0.0724857421024737	0.903819052687783	0.964381662913006
Merged-chr8-45330475-4	chr8	45330395	45330595	+	826.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133969, intron 1 of 10)	intron (NM_133969, intron 1 of 10)	2701.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	3.94763957920258	4.43299097788387	4.15021026650848	4.0081719073742	4.38244126383477	4.22747679109259	3.98544495376343	4.28064668960427	0.220316582317746	0.60163655320026	0.827140308199285
Merged-chr2-164913664-4	chr2	164913567	164913767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1917.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	6.18108037012022	6.02510937275952	5.58565806766972	6.24339665498498	6.09423197626788	5.79578327951276	6.37492646834664	6.09928814866431	0.0989727719030557	0.718444084887759	0.887579709565285
Merged-chr16-11418471-4	chr16	11418364	11418564	+	961.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 9 of 20)	intron (NM_028964, intron 9 of 20)	12816.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	5.09863874529714	5.20745056399133	4.7094197901581	5.01358137229221	4.78261343649294	4.71270224023531	5.01226695014714	4.74714462678002	-0.407985173768841	0.223679716309139	0.531783993154169
Merged-chr4-123914794-4	chr4	123914704	123914904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2629.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	6.16429959344757	5.6023451120558	5.5988170440832	5.86919534877026	6.07475593083311	5.85864115434928	5.67945194080309	6.04655468621327	0.16117953290948	0.556662337752624	0.802199963024407
Merged-chr10-80017028-3	chr10	80016936	80017136	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347074, exon 1 of 23)	exon (NM_001347074, exon 1 of 23)	121.0	NM_001347074	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	4.54820401337441	4.34365216105033	3.91956607446348	3.88644357415368	4.07833462305322	4.60727269948233	4.11457211662237	4.31288008817895	0.230065349366569	0.610197990578007	0.831564096406981
Merged-chr16-23104096-4	chr16	23104004	23104204	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-3364.0	NR_152586	13682.0	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	4.86819882738484	4.6202513658602	5.04107031463194	4.76643503126495	4.84148858546672	4.84830663591623	5.13777300848982	5.21692650528093	0.384317866507767	0.249676741087682	0.560742666586102
Merged-chr10-88574177-5	chr10	88574077	88574277	+	987.4466550000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252372, intron 2 of 28)	intron (NM_001252372, intron 2 of 28)	30975.0	NM_001252372	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	4.1577330674969	4.29954851044648	4.49611486249618	4.29083817736669	4.33321272443121	4.2341530620898	3.93411943729331	4.37694950103158	-0.194350728128616	0.630863946159452	0.843094226067586
Merged-chr16-91840364-4	chr16	91840305	91840505	+	863.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 18 of 28)	intron (NM_001110275, intron 18 of 28)	91225.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	3.66189606676354	3.47880414977822	4.20194682045029	3.80520839461254	3.43611949090633	3.89084654076828	3.70203420408518	3.81799273337225	-0.278788850725284	0.586493664923218	0.818678078435239
Merged-chr5-124540680-4	chr5	124540568	124540768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019770)	promoter-TSS (NM_019770)	-123.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	7.51738608579331	7.64710634691682	7.30319789495111	7.21826480946773	7.42237941022033	7.83173552383505	7.16706213693046	7.29810921774861	0.0323264795511694	0.881689963026657	0.955421396922851
Merged-chr7-55911571-4	chr7	55911460	55911660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 22 of 30)	intron (NM_011370, intron 22 of 30)	50933.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	8.11756923058162	8.21063165571898	8.59553230201861	8.27113741564833	8.47659655654959	8.55231221669587	8.77766902922909	8.47210737943994	0.334553254753638	0.0565146386223276	0.248999904570834
Merged-chr5-21768690-4	chr5	21768610	21768810	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009584, exon 8 of 17)	exon (NM_009584, exon 8 of 17)	16455.0	NM_009584	22791.0	Mm.266312	NM_009584	ENSMUSG00000029014	Dnajc2	AU020218|MIDA1|Zrf1|Zrf2	DnaJ heat shock protein family (Hsp40) member C2	protein-coding	5.00971340130253	5.34459158712356	5.11553146548578	5.08637298100565	5.6063747037429	5.03515292846824	5.15560172162979	5.20895903926874	0.262827337975005	0.408496148438242	0.70438176546703
Merged-chr2-16491545-4	chr2	16491425	16491625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026162, intron 1 of 13)	intron (NM_026162, intron 1 of 13)	135221.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	7.34992400078028	7.17194971063117	7.58069101192172	7.23539469230253	6.96270815672046	6.89404916106007	7.25472921863028	7.03680895629356	-0.403086415633699	0.0448727865573501	0.216454328704637
Merged-chr11-75487767-2	chr11	75487667	75487867	+	978.6666869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_138659, exon 2 of 42)	exon (NM_138659, exon 2 of 42)	990.0	NM_138659	192159.0	Mm.3757	NM_138659	ENSMUSG00000020850	Prpf8	AU019467|D11Bwg0410e|DBF3/PRP8|Prp8|Sfprp8l	pre-mRNA processing factor 8	protein-coding	3.30617368268404	2.97335230025575	3.01252655216809	2.79737304502167	2.8967865540738	3.19001991679276	3.29230544408618	3.40564688626144	0.702159166687457	0.246508142682587	0.557730549523328
Merged-chr4-136364163-3	chr4	136364066	136364266	+	601.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52568.0	NM_001355182	74326.0	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	3.20371932412372	3.32800589693547	3.44881726008462	2.5380157497958	2.79171504669838	3.01620948456935	2.59638505286366	2.83188703198262	-1.53053426039598	0.039770459168653	0.201047318639574
Merged-chr10-98898198-4	chr10	98898078	98898278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16464.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	7.57623324282149	7.56401154412651	7.26169365391514	7.54429412310468	7.46093578759672	7.48326935981092	7.65643664570917	7.58963265449828	0.0671780642596349	0.7060301598468	0.881879743016467
Merged-chr5-125391778-4	chr5	125391665	125391865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1748.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	7.05567970792552	7.05198153304945	6.79852552481735	6.95442032036603	6.78943948717892	7.00339119738297	6.76412841370659	6.80795683217443	-0.180865678353674	0.356853769030585	0.663180972450536
Merged-chr19-29488602-4	chr19	29488517	29488717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33370.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	7.1429988745247	6.99285205472357	7.00163418537366	6.9805405561823	7.1730404992984	7.12699615074442	7.0274976265199	6.91894613880542	0.0588482234414624	0.754696369635455	0.903394260200158
Merged-chr13-47224813-3	chr13	47224730	47224930	+	802.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 3 of 7)	intron (NM_146042, intron 3 of 7)	30827.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	4.03698030098139	4.05137182870718	4.03760786232084	3.93906893869408	3.89486963747144	3.62076915545344	3.55629895133067	3.79596169687728	-0.808086910859435	0.0796808685526986	0.305690761673822
Merged-chr18-80225060-3	chr18	80224987	80225187	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025299, exon 4 of 4)	3' UTR (NM_025299, exon 4 of 4)	18220.0	NM_001042408	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	5.45110635173273	4.87630346585787	5.30956614625804	5.28159848036122	3.92044057331221	4.41889888734258	4.0913546101591	4.7443469039536	-1.98916090309166	2.14800691988852e-06	6.9655118246353e-05
Merged-chr19-17337224-4	chr19	17337124	17337324	+	794.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	2281.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	3.98791283664214	4.18059343679733	4.44672962161379	3.88619030005986	4.66168677644501	4.11328304108709	4.30572626902272	4.36440915450499	0.625415618745229	0.143195324825778	0.421329340516185
Merged-chr5-135575667-3	chr5	135575564	135575764	+	966.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2615.0	NM_001356630	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	4.32323824475201	4.2065877286612	4.36309372660831	4.07228171125783	4.03957740486037	4.3253024044677	3.88835658076724	3.66170717877546	-0.620554238210855	0.166532917230587	0.457880042451936
Merged-chr3-105849539-1	chr3	105849439	105849639	+	651.5	f0_balb.idr	Intergenic	Intergenic	-21319.0	NM_027025	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	3.18619718222674	2.95953901152451	2.98538979738692	2.90895057147147	2.4371914970619	2.47422176657846	2.52620929122537	2.6769962579505	-2.77699466413375	0.000505684570589882	0.00778083053394233
Merged-chr1-134094474-4	chr1	134094358	134094558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-15303.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	6.40903396441499	6.21681171611784	6.49388898694714	6.64979369986583	6.29849828460909	6.18410247189167	6.42802807070937	6.37049100358538	-0.207934990837863	0.363275461213872	0.668453503561392
Merged-chr8-111636479-3	chr8	111636380	111636580	+	858.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-6158.0	NM_027570	52815.0	Mm.27589	NM_027570	ENSMUSG00000031958	Ldhd	4733401P21Rik|D8Bwg1320e	lactate dehydrogenase D	protein-coding	3.78614337343173	4.54708155703984	4.04735555096624	4.14441874137497	3.66713449999351	3.96519726599712	4.02969382598606	3.9468969118137	-0.700052631782089	0.136059840869946	0.410486305822995
Merged-chr4-45436829-3	chr4	45436735	45436935	+	819.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 5 of 5)	intron (NM_001033306, intron 5 of 5)	-28069.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	3.28848749694053	3.06797134585761	3.49523603705552	3.74666817089412	3.0272555877549	2.93244396368905	3.33007312154399	2.97288229125423	-1.3667409182094	0.0304301304840532	0.168873695979874
Merged-chr8-126587973-4	chr8	126587847	126588047	+	877.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164598)	TTS (NM_001164598)	5489.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	3.30817827247427	3.32740548819379	3.30861916151897	3.22574057723556	3.41492777902357	3.24151062060318	3.12223519996888	3.13098052555815	-0.179683594265537	0.740413546790007	0.897887005267449
Merged-chr6-149409093-4	chr6	149409014	149409214	+	949.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009753, exon 1 of 9)	5' UTR (NM_009753, exon 1 of 9)	130.0	NM_009753	12121.0	Mm.177181	NM_009753	ENSMUSG00000003452	Bicd1	B830009D06Rik|bic-D 1	BICD cargo adaptor 1	protein-coding	4.571218054583	4.43745898343897	4.41429220663542	4.18916186504515	4.33702979883948	4.36165122554509	4.35200217669076	4.45271738515377	-0.0470356919435592	0.901694825192676	0.963514762035143
Merged-chr8-41299597-3	chr8	41299494	41299694	+	801.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 22 of 37)	intron (NM_023662, intron 22 of 37)	59835.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	3.15130685226947	3.32138317144512	3.39488368114574	3.26774488175781	3.75151975804823	3.45154655824617	3.38169824940358	3.27725396115797	0.697000940500685	0.188406540121984	0.486992724783917
Merged-chr1-58857097-4	chr1	58857030	58857230	+	869.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54628.0	NM_001277926	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	4.16678262100215	3.86738457148296	4.16745110661245	3.33482088151701	4.29776766667575	4.0565769776773	4.01363276215246	4.02893744173116	0.504274837387265	0.313579982588654	0.625506012930708
Merged-chr2-103547332-3	chr2	103547232	103547432	+	919.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18978.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	3.48774418399248	3.61148887580074	3.54641749091367	3.7189565989157	3.51908129135853	3.77348468934156	3.74164836397224	3.89207991079898	0.396283226575922	0.409915699399234	0.705261887978006
Merged-chr10-59381819-3	chr10	59381716	59381916	+	971.822205	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR1_Mm|LTR|ERVK	-21869.0	NM_023530	69836.0	Mm.30268	NM_023530	ENSMUSG00000009646	Pla2g12b	2010002E04Rik|Fksg71|Pla2g13|hlb218	phospholipase A2, group XIIB	protein-coding	4.01443619472442	4.1473496313419	4.09356376501941	4.09578493525386	2.90027694889188	3.16268018854861	3.0353556765844	3.04235510878857	-5.50989119924963	4.1067265219982e-08	1.92310978361388e-06
Merged-chr4-141676670-4	chr4	141676519	141676719	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	9097.0	NM_023544	69994.0	Mm.441022	NM_023544	ENSMUSG00000040715	Rsc1a1	1700027M01Rik|Rs1	regulatory solute carrier protein, family 1, member 1	protein-coding	4.59270788814195	4.53648236331117	4.50978409201125	4.36407945477691	4.8030272411708	4.76642851229791	4.72320259092836	4.70635912156534	0.570686415363965	0.095116764133193	0.337436012471917
Merged-chr10-39261734-1	chr10	39261634	39261834	+	888.0	f0_balb.idr	Intergenic	Intergenic	-97940.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	4.17347054177865	4.08994920479228	3.86914686710577	3.63011834045678	3.76259505177838	3.44547080711524	3.94640695959543	3.6534335516792	-0.674685233204969	0.178589195683905	0.474403912720026
Merged-chr6-106443396-3	chr6	106443357	106443557	+	781.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109749, intron 8 of 25)	intron (NM_001109749, intron 8 of 25)	305580.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	3.57024145866698	3.63515245499614	3.96416675000962	4.08400681333905	3.57098861240519	3.68731880332705	3.6129704079198	3.44868528074696	-0.805339872442774	0.108165130360222	0.362980975521504
Merged-chr19-5041386-4	chr19	5041326	5041526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134155)	promoter-TSS (NM_134155)	72.0	NM_134155	107392.0	Mm.29628	NM_134155	ENSMUSG00000080268	Brms1	AV003220|AW554636	breast cancer metastasis-suppressor 1	protein-coding	6.24304088272281	6.26519755848477	6.18840526344999	5.99160889540298	6.06202462063565	6.11308349845114	5.83545409083503	5.83628876996878	-0.303428314936333	0.212417504594907	0.517371498007674
Merged-chr1-172321573-3	chr1	172321472	172321672	+	997.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008429, exon 4 of 4)	3' UTR (NM_008429, exon 4 of 4)	7750.0	NM_008429	16524.0	Mm.261168	NM_008429	ENSMUSG00000038026	Kcnj9	1700085N21Rik|Girk3|Kir3.3|mbGIRK3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding	4.70888496528271	4.89424769860935	4.63876129839027	4.84367160529372	3.95671184556651	4.1755017066991	3.91368618270694	4.35103517278986	-1.6267084897552	5.14930200347486e-05	0.00115951334168091
Merged-chr1-171559012-4	chr1	171558895	171559095	+	960.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018729)	promoter-TSS (NM_018729)	-198.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	6.23381399059525	6.12275789540006	6.56932105468438	6.18766296697655	4.85383894305112	5.24756479442711	4.85924066805845	5.21100490484371	-2.13076359876617	6.47368060435975e-13	7.12194917678088e-11
Merged-chr18-38944621-3	chr18	38944544	38944744	+	782.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 4 of 4)	intron (NM_001033789, intron 4 of 4)	-25945.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	3.33949074090475	3.22645934697021	3.55215456273448	3.46883556394249	3.3299580518408	3.33035120468581	3.48774482194351	3.2793021973933	-0.16354238456051	0.753942317716214	0.902977574543965
Merged-chr6-24956164-6	chr6	24956089	24956289	+	886.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177013)	promoter-TSS (NM_177013)	-64.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	4.48580823789475	4.28784309290098	4.72469286100548	4.13067665535858	4.00772760201974	4.31984740479256	3.85843679366757	4.141465284064	-0.814132346949113	0.0622876911398288	0.264107676633221
Merged-chr18-38418166-4	chr18	38418065	38418265	+	824.858337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022996)	promoter-TSS (NM_022996)	-742.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	4.02338445089299	4.33273647479939	4.26216928842406	4.07914172727492	4.30281672938117	4.24964054855895	4.05829436880498	4.38346924900163	0.200998218966938	0.616169232594325	0.834845587136962
Merged-chr14-27230219-4	chr14	27230091	27230291	+	793.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 3 of 12)	MLT1N2|LTR|ERVL-MaLR	-7819.0	NM_027871	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	2.86069033129558	3.08445892516905	3.07212442723518	3.02424363017009	3.16565066296392	3.58173225766004	3.44839951618878	3.25299419534929	1.32613748176189	0.0193897394356649	0.125309664501491
Merged-chr10-63164786-3	chr10	63164679	63164879	+	910.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182992, intron 4 of 19)	intron (NM_182992, intron 4 of 19)	39173.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	3.86802588769474	4.08542086798038	4.15108565528059	4.33369048262419	4.22221686073617	3.87871259187726	3.79991800331894	3.43628603086453	-0.67519212720386	0.184269604342389	0.481590826784905
Merged-chr11-101589537-3	chr11	101589409	101589609	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359325, intron 6 of 7)	intron (NM_001359325, intron 6 of 7)	7210.0	NM_001359325	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	3.71225973177192	3.34329245541844	3.30159929131397	3.36452875481648	3.51858159476261	3.41445850053191	3.22878035800905	3.35910533712644	-0.160979633736908	0.761280173065149	0.906512173824769
Merged-chr9-59485873-4	chr9	59485763	59485963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019927, intron 1 of 13)	CpG	511.0	NM_019927	23806.0	Mm.305925	NM_019927	ENSMUSG00000025234	Arih1	AU021774|Ari|Ari1|Hari|Hhari|Ubch7bp|Uip77	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding	5.96231852501748	6.22152748995739	5.96336641977933	6.01415071363323	6.35092888569768	6.24978054246518	6.18264882114877	6.15181495006656	0.300641075136401	0.19224853589428	0.491824448203475
Merged-chr4-59821713-4	chr4	59821610	59821810	+	909.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	L1MA9|LINE|L1	16060.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	4.29899261994517	3.99068107601343	4.15040527946332	4.33031645916525	4.83799389346582	4.47608496831696	4.37055909690917	4.9170380754662	1.06274368292981	0.00774129889728854	0.0656129928804598
Merged-chr5-5336719-1	chr5	5336619	5336819	+	631.0	f0_c57.idr	intron (NM_011074, intron 2 of 14)	L1MB8|LINE|L1	43532.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	3.54378824767397	3.47127585821069	3.80700454735557	3.43570584001297	3.76602216835401	3.92794113603582	3.53089788739745	3.80466766318746	0.621518885861303	0.196696213844984	0.497835928075672
Merged-chr15-25406182-4	chr15	25406064	25406264	+	877.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	7600.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	4.36212576574112	4.5650974116276	4.32010370811482	4.42587560062744	4.01664726864102	4.30890220034742	4.21180866815914	4.2275900653642	-0.583072003850761	0.135852503501596	0.410243322164528
Merged-chr19-41323979-4	chr19	41323867	41324067	+	940.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 7 of 16)	MIR|SINE|MIR	-59963.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	4.29106323215743	4.5831810308463	4.55191184171346	4.76285648476336	4.36523729396104	4.37037677525525	4.71124531147242	4.24027787037923	-0.315800911905656	0.41702621865302	0.71079498138223
Merged-chr1-138972645-4	chr1	138972505	138972705	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	4884.0	NM_181347	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	3.63741279371416	4.01288525936101	4.23133090060641	4.29081445176131	3.79750691568693	3.87731270079313	3.85162859576712	4.05979887906369	-0.492439134204057	0.291173765569586	0.60348418773775
Merged-chr3-55673429-3	chr3	55673314	55673514	+	627.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 48 of 57)	intron (NM_030595, intron 48 of 57)	-109096.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	3.14296232155995	3.20980404261181	3.25049042480917	3.17544010720449	2.77773818033729	3.00597310540675	2.82101157014349	2.96240839420663	-1.34383643618206	0.0272525413621967	0.157283389905517
Merged-chr9-77652064-2	chr9	77651964	77652164	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172925, intron 2 of 2)	L1MA5A|LINE|L1	15332.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	3.29057779746605	3.18647262098199	3.22993904831307	3.5513449167874	3.45334983410147	3.51852439754935	3.27954389793783	3.60458958577412	0.451575244792566	0.404000705224598	0.701206012163242
Merged-chr7-27331006-4	chr7	27330917	27331117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175641, intron 4 of 32)	CpG	2631.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	6.33409254779254	5.69032709431328	5.70354267268518	5.81740063889556	6.09090248199169	6.23338014583928	6.18178051419563	5.82907261930851	0.291223824453146	0.286052414533701	0.597615363323773
Merged-chr1-36508414-4	chr1	36508325	36508525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_033570, exon 7 of 7)	3' UTR (NM_033570, exon 7 of 7)	-3442.0	NM_001331209	94218.0	Mm.256323	NM_053186	ENSMUSG00000001138	Cnnm3	Acdp3|Clp3|mACDP3	cyclin M3	protein-coding	6.44497599966278	6.29964063814551	6.50955322922053	6.51248623765343	6.00756316725755	5.65013469852582	6.32935890219276	6.19028874371018	-0.570865979069044	0.0212289419089104	0.1331795219579
Merged-chr2-164815543-4	chr2	164815448	164815648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178375, intron 1 of 1)	intron (NM_178375, intron 1 of 1)	-7138.0	NM_028028	71971.0	Mm.161149	NM_028028	ENSMUSG00000017764	Zswim1	2410003H12Rik|AI850991|BB046916	zinc finger SWIM-type containing 1	protein-coding	5.84724301621159	5.50482196970127	5.69978590897575	5.76918646122111	5.91501822457916	5.79591237681475	5.97120204382118	6.22355582380372	0.438138742182482	0.0889220211663205	0.325381910896163
Merged-chr13-20114461-3	chr13	20114341	20114541	+	861.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	23934.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.52097063858673	3.52369207952083	3.29194088566495	3.41899047504318	3.56412494448153	3.40319784321012	3.39893727622015	3.66736141276199	0.251114392036761	0.616195978819605	0.834845587136962
Merged-chr8-117294631-2	chr8	117294501	117294701	+	823.916687	f0_balb.idr|f0_c57.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	37582.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.52794400299441	4.5986349178309	4.48770864355952	4.61330576690185	4.48805418603565	4.43737108703864	4.50792316092275	4.44264927718998	-0.210966714829895	0.552378645629368	0.799600404125776
Merged-chr17-47630349-2	chr17	47630249	47630449	+	802.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198421)	promoter-TSS (NM_198421)	-341.0	NM_198421	224836.0	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	2.96821776433986	3.35054964157675	2.96858856406771	2.66149433556568	3.12993911859091	3.07908367063876	2.760153619299	2.83693388485656	-0.193231280052446	0.771327143434415	0.910379161490028
Merged-chr9-66060122-4	chr9	66060005	66060205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011149)	promoter-TSS (NM_011149)	-64.0	NM_011149	19035.0	Mm.335249	NM_011149	ENSMUSG00000032383	Ppib	AA408962|AA553318|AI844835|Cphn-2|Cphn2|CyP-20b	peptidylprolyl isomerase B	protein-coding	7.88947283102685	8.17314284461954	7.92670730835194	7.87145651679157	7.77763298741541	7.86290586557726	8.05987803439474	7.78697487335475	-0.122680186317038	0.479240071165999	0.754970431921844
Merged-chr9-110857058-4	chr9	110856948	110857148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146227)	promoter-TSS (NM_146227)	-919.0	NM_146227	235631.0	Mm.102265	NM_146227	ENSMUSG00000048752	Prss50	79H19C|Tsp50	protease, serine 50	protein-coding	5.52860387671987	5.61421022546479	5.5573215119883	5.65272327825598	5.71930813230982	5.46154804142015	5.58283827335547	5.90953807701608	0.147271365807348	0.580942032371176	0.816047207441467
Merged-chr4-47315641-4	chr4	47315516	47315716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37606.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	7.91750386962268	7.77389793632163	8.27424803641058	8.25134722169709	7.70924502564386	7.64992830707263	7.82277010580092	7.68039089866733	-0.465654895419058	0.0129903455299485	0.0949224724849812
Merged-chr9-96395331-4	chr9	96395204	96395404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30873.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	7.02643786776419	6.75706412313848	7.16771903503389	7.11245309836819	7.15956360969736	7.11505131213979	7.16432582999005	6.89278157085431	0.0861655792017632	0.667283385142719	0.862338897157766
Merged-chr5-112950988-4	chr5	112950896	112951096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 9 of 20)	intron (NM_001285806, intron 9 of 20)	-54634.0	NM_028901	74376.0	Mm.441903	NM_028901	ENSMUSG00000072720	Myo18b	4932408L24Rik|4933411E19Rik|Gm448	myosin XVIIIb	protein-coding	6.23125848492664	6.47388020423584	6.25092917298782	6.00440896757156	6.0450790860339	6.16172478598197	6.02070543708911	5.88648199055018	-0.322436531674912	0.189638771572425	0.488608489167945
Merged-chr1-180268809-4	chr1	180268715	180268915	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12515.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	4.96447955764544	5.39915250831315	5.107442758796	4.95667246468081	5.24758487569671	5.21400920232581	5.40457676761889	5.13713598859825	0.264013801999869	0.392449817857264	0.691933206965634
Merged-chr3-87365347-4	chr3	87365245	87365445	+	751.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 2 of 5)	intron (NM_009690, intron 2 of 5)	7464.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	3.99736555176253	3.75027923956615	3.69068659973005	3.58496426785153	4.14287686480124	4.02556956471906	3.83739090493752	3.94917706981737	0.699611760036146	0.118385031478592	0.380653573456868
Merged-chr5-92352428-2	chr5	92352328	92352528	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	RLTR13D2|LTR|ERVK	-3539.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	3.4644854179233	3.12288696654051	3.4107667091721	2.71800730895499	3.28786869602758	3.63711907963326	3.55081366822754	3.35229244792764	0.894223118102502	0.145195203742567	0.424613382770069
Merged-chr3-38116222-4	chr3	38116131	38116331	+	923.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91888.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	5.11643520285344	5.25831359071375	5.27512802835704	5.21646394310323	5.29809705214159	5.50480798912594	4.98832889053697	4.93396822754969	-0.0266732390146839	0.931723219260629	0.97535206477795
Merged-chr1-120055644-4	chr1	120055562	120055762	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 11 of 13)	intron (NM_001012322, intron 11 of 13)	18118.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	4.71945552142914	4.68866541241132	4.94249080580066	4.96841209953545	4.71737542662899	4.53417422173281	4.884266763412	5.39009677995239	0.158851969647035	0.669667702330111	0.86357079102718
Merged-chr6-124769515-4	chr6	124769411	124769611	+	872.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302555)	TTS (NM_001302555)	162.0	NM_001302642	13807.0	Mm.3913	NM_013509	ENSMUSG00000004267	Eno2	AI837106|D6Ertd375e|Eno-2|NSE	enolase 2, gamma neuronal	protein-coding	4.21917250382392	4.30238552241575	3.66810036425641	4.16439236317461	4.03267815214307	3.84848107081027	3.93185819548268	3.94588472342316	-0.454726629188824	0.315065517502123	0.627021430137102
Merged-chr1-138620215-4	chr1	138620124	138620324	+	921.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311148)	promoter-TSS (NM_001311148)	-467.0	NM_001311148	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	4.40678786721151	4.57566633672106	4.5353175429679	4.32824146537349	4.68290718163069	4.78440215757984	4.43148023871176	4.44870793475458	0.317469888952815	0.384328468735991	0.685943584066575
Merged-chr7-17002575-4	chr7	17002481	17002681	+	972.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7993.0	NM_001101535	434130.0	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	-	coiled-coil domain containing 8	protein-coding	4.32239951044261	4.18952359505216	4.65085624326057	4.37773600322503	4.53950190793417	4.19296095795922	4.55486564053451	4.84713121599415	0.370289608682164	0.347353522238151	0.655453637603211
Merged-chr18-58576171-5	chr18	58576076	58576276	+	897.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081072, intron 2 of 9)	intron (NM_001081072, intron 2 of 9)	19936.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	4.45236064298124	4.53623294671508	4.41057202188912	4.78259627113207	4.41530335892961	4.40160503727849	4.10507044808718	4.531055682181	-0.450133180898567	0.246149378056822	0.557414945937469
Merged-chr17-69201143-4	chr17	69201045	69201245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	41789.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	7.04086813382294	7.15552216139228	7.18413240508935	7.34090504633183	7.21893858972398	7.27996913954434	7.20275578014828	7.07411134929879	0.000594499165578036	0.997462079610061	0.998991886373499
Merged-chr4-46497713-4	chr4	46497616	46497816	+	952.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053179, intron 2 of 5)	intron (NM_053179, intron 2 of 5)	8387.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	4.21042669341478	3.85727519810844	4.21106785334807	4.24298774920457	4.72838069345631	4.71154043300657	3.81650624128419	4.42545477995197	0.78164714225614	0.0884759063826371	0.324553006617693
Merged-chr9-45275509-4	chr9	45275355	45275555	+	868.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B2|LTR|ERVK	-6306.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	2.8600260391505	2.58322153270311	3.20576397444912	2.33922094839382	2.34608178376242	2.49841878530563	2.46041809525898	2.5403245135619	-1.69069656081288	0.033016799582207	0.178298877882349
Merged-chr7-24364992-4	chr7	24364893	24365093	+	908.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5270.0	NM_001163510	16534.0	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	4.27669058585132	4.14237030750847	4.18366774454144	4.13468728198715	4.45699980909187	4.40531749864579	4.16575974468095	4.69323303703628	0.632889408832631	0.103585480944253	0.353670338262288
Merged-chr12-85472254-4	chr12	85472152	85472352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1638.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	8.26079148231211	7.894955218926	7.91501848004017	8.0906213356432	7.70182183594973	7.81726624034573	8.29786621064579	8.20036977275182	-0.0304150041724507	0.880032174563251	0.955065788432447
Merged-chr12-112631012-3	chr12	112630919	112631119	+	952.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 2 of 12)	MTD|LTR|ERVL-MaLR	10972.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	4.24900367727113	4.07339420407198	4.45141733000691	4.70074866479059	3.92348604721555	3.8386400809252	4.0445814775	4.24698958503884	-0.971256761723936	0.028547226368003	0.162167839237676
Merged-chr17-44078839-4	chr17	44078741	44078941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329619)	promoter-TSS (NM_001329619)	39.0	NM_001329619	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	5.26419632098327	5.78648895604385	5.87502155450585	5.58448033126648	6.55043412533072	6.46233496044626	6.47850776360664	6.26518122534033	1.24325389021888	8.60397965373874e-07	3.05752704829491e-05
Merged-chr9-106370087-3	chr9	106369929	106370129	+	856.711121	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153459, intron 1 of 2)	intron (NM_153459, intron 1 of 2)	1397.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	3.22198538606495	3.16726575915453	3.28371606317603	2.93923689437333	3.33929803954974	3.85696371759272	3.32892367445346	3.28195098730853	1.1490358879639	0.0396838560083216	0.200771709916577
Merged-chr15-59717229-4	chr15	59717124	59717324	+	934.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68570.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	5.10876037598613	5.485023817388	5.00708604000711	5.44045495018444	5.14681861571822	5.14681077720482	4.91046617521217	4.68295629937804	-0.562004299446173	0.0923841432495912	0.332497898182872
Merged-chr2-174109892-3	chr2	174109804	174110004	+	973.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_213733)	promoter-TSS (NM_213733)	-447.0	NM_213733	228961.0	Mm.295629	NM_213733	ENSMUSG00000039263	Npepl1	BC023239|C85514|mKIAA1974	aminopeptidase-like 1	protein-coding	4.30209301130736	3.86447076186326	3.9633987326061	4.10671873395808	3.95775974619826	4.5154078689206	4.40361019819311	4.53274153101447	0.724972477197579	0.0930946140599551	0.333772303136732
Merged-chr17-65931174-4	chr17	65931079	65931279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023053, intron 3 of 4)	intron (NM_023053, intron 3 of 4)	20008.0	NM_023053	65960.0	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	5.62204764348477	5.52536667746068	5.62302589218319	5.68125763237832	5.67223927729632	5.74438804112709	5.83662350379099	6.04705638506311	0.34402901623951	0.184692102321369	0.482305431673797
Merged-chr17-86770024-4	chr17	86769848	86770048	+	893.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010137, intron 1 of 15)	intron (NM_010137, intron 1 of 15)	16084.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	4.05768292289654	4.08051303889	4.14640894751131	4.4588140274318	3.49269488706145	3.92881725408787	3.84583154040862	3.68988395591049	-1.33227188036063	0.00463360353952149	0.0448911482699878
Merged-chr11-58905020-2	chr11	58904920	58905120	+	786.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011758)	promoter-TSS (NM_011758)	-795.0	NM_011758	22698.0	Mm.127646	NM_011758	ENSMUSG00000037001	Zfp39	CTfin33|Zfp-39	zinc finger protein 39	protein-coding	3.63070629315689	3.72598225591457	3.3530211470679	3.01023556808567	3.69784628098653	3.699276801384	3.56497411949161	3.15201618080384	0.290794455380669	0.620561042301884	0.837333027459204
Merged-chr11-117809716-4	chr11	117809610	117809810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009304)	promoter-TSS (NM_009304)	43.0	NM_009304	20973.0	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	5.00376394509082	4.91453815521199	5.36269539839898	5.34371897187732	5.17780022104293	5.44830066781353	5.58964604243284	5.24015082395669	0.338272858211131	0.283283672291716	0.595360804251864
Merged-chr1-36737499-3	chr1	36737392	36737592	+	807.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040290, intron 5 of 8)	intron (NR_040290, intron 5 of 8)	22954.0	NR_040290	71166.0	Mm.157049	NR_040290	ENSMUSG00000102416	4933424G06Rik	1700104I15Rik	RIKEN cDNA 4933424G06 gene	ncRNA	3.6327382145204	3.93046270323585	3.68951868296829	3.71278357237347	3.6860789417776	3.75105141570941	4.04947842001844	3.84287402099307	0.261486148377704	0.569394507424878	0.809366519988776
Merged-chr18-70415606-3	chr18	70415510	70415710	+	914.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-56844.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	3.27236753837215	3.17146867715639	3.62673771370281	2.77167134084423	4.39555084954123	4.19027502326783	4.69896723852752	4.2664116481843	3.84197599856704	2.08442544007148e-11	1.78326103844769e-09
Merged-chr4-129335953-4	chr4	129335848	129336048	+	985.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025970)	promoter-TSS (NM_025970)	-78.0	NM_025970	67106.0	Mm.36575	NM_025970	ENSMUSG00000057572	Zbtb8os	2010001H09Rik|2310028N13Rik|AI851226|Arch|Archm	zinc finger and BTB domain containing 8 opposite strand	protein-coding	4.81521734583237	5.3460547038451	5.34965817810636	4.91632827403308	5.76170350968948	5.57989587830308	5.16934186181592	5.40281853660623	0.68965981258185	0.0342027137121218	0.182661686623283
Merged-chr11-119913782-4	chr11	119913716	119913916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085498)	promoter-TSS (NM_001085498)	6.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	5.02740061691915	4.99115954925187	5.02824178488135	4.74060176221798	5.71993434216873	5.3762294240204	5.26709223675431	5.73813371756603	1.12323027029311	0.00023334570230319	0.00412653757620839
Merged-chr3-133754348-3	chr3	133754261	133754461	+	847.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-209971.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	3.70903194900723	3.56509930166701	3.70957464010911	3.64446014185015	3.38013383058918	3.42654472591569	3.42758259403991	3.88585609921023	-0.362275612291543	0.474561422533695	0.751776183889563
Merged-chr13-45088790-4	chr13	45088731	45088931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-86735.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	6.16851324665816	5.78192635299764	6.20761705335089	6.27352972251192	6.28893091749213	5.74337284353197	5.95218356419032	6.12601752561472	-0.111401242070122	0.673339255124226	0.865717176504662
Merged-chr9-25549377-3	chr9	25549272	25549472	+	696.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	67775.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	3.58016931465851	3.55476036626929	3.52174978930913	3.89841573665114	3.72075869603352	3.69754493467656	3.62289036484503	4.09229326345165	0.390397581976845	0.433714716095932	0.723254141528262
Merged-chr13-51908355-4	chr13	51908267	51908467	+	882.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61692.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	4.10149038193897	4.35806499351286	4.2445101612852	4.49565996836552	3.98926858517361	4.12134976116501	4.31171805411069	4.40978543812157	-0.269422207090158	0.513659438893178	0.776626777135012
Merged-chr5-92312469-3	chr5	92312357	92312557	+	946.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2433.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	4.53449368398678	4.25604372047766	4.13585559143626	3.76143299632994	5.06702186566441	4.94613077808461	5.0623734057527	5.02780569084195	1.88215021339122	1.00745071809241e-06	3.52553267763518e-05
Merged-chr3-32708534-4	chr3	32708438	32708638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019673)	promoter-TSS (NM_019673)	-8.0	NM_019673	56456.0	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	8.75401250968715	9.04771665226233	9.13217733730132	9.01564253475653	8.92124752314953	8.9416899401152	9.19475074959175	8.62420823196452	-0.073458126197464	0.67547260543373	0.866777974061798
Merged-chr3-40951519-2	chr3	40951419	40951619	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040399, intron 1 of 9)	intron (NM_001040399, intron 1 of 9)	888.0	NM_001040399	214048.0	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	3.19906986485984	3.17737734638375	3.19951395011526	2.83675395628534	2.86087347583647	3.42472711301289	3.06891907212796	3.13947968061056	0.115627883037455	0.848676529827719	0.942799665730853
Merged-chr7-138846218-4	chr7	138846121	138846321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026391)	promoter-TSS (NM_026391)	46.0	NM_001045483	69546.0	Mm.31598	NM_027115	ENSMUSG00000041775	Mapk1ip1	2310009E07Rik|AU043776|MISS	mitogen-activated protein kinase 1 interacting protein 1	protein-coding	7.62955836054114	7.22607440498145	7.41609434043039	7.33023887420538	7.45242940361875	7.60285183152956	7.50862855195214	7.25529203017102	0.0760609674886729	0.68762862849192	0.87239266625243
Merged-chr5-122704699-4	chr5	122704593	122704793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2851.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	6.03111090883355	6.30350490010692	5.96645226047516	5.52980558577747	6.15866763375857	6.45674184935386	5.89041310259157	5.86897148569857	0.218303869935737	0.455237914463273	0.738824832723364
Merged-chr7-45098997-3	chr7	45098904	45099104	+	981.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357117, intron 4 of 6)	B3|SINE|B2	4818.0	NM_001357117	14132.0	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	5.10752048590289	4.73789287218897	4.74388655551089	4.7316301115749	4.17001321434098	4.0664291617415	4.61114052885155	4.27839008429406	-1.21928575324843	0.00205063191999302	0.0238305190911319
Merged-chr11-85352736-4	chr11	85352648	85352848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166642)	promoter-TSS (NM_001166642)	-416.0	NM_001166642	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	6.26391740896324	6.57881063924711	6.03715494626467	5.90662006883424	6.53434892248508	6.30174524185923	6.15514693830818	6.43696091205298	0.235803928891542	0.363951299202191	0.668927433267172
Merged-chr5-148707548-4	chr5	148707433	148707633	+	805.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34307.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	3.44649440741296	3.47248611644015	3.94582896200653	3.73988116229807	4.27703651016013	4.39915674680871	4.56736033415965	4.2660064613501	1.8666046870628	6.21174325330759e-05	0.00135877588514807
Merged-chr10-26374239-4	chr10	26374207	26374407	+	964.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347467)	promoter-TSS (NM_001347467)	-235.0	NM_001359254	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	4.76472191981929	4.38052805773587	5.01871694909667	4.63377134231015	4.44351926496386	4.78945958338376	4.33608747368725	4.39967262577227	-0.465840785337928	0.228341781971558	0.537197886725226
Merged-chr8-122284205-3	chr8	122284102	122284302	+	849.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009569, intron 1 of 9)	intron (NM_009569, intron 1 of 9)	2061.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	3.13966747351193	3.08190636148003	3.08055909394689	3.07985140565865	2.9458072826984	3.30798719935708	3.12833413042264	3.13843169769063	0.1413168769251	0.801394970384854	0.923365533732052
Merged-chr16-57123299-4	chr16	57123206	57123406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138599, intron 1 of 11)	intron (NM_138599, intron 1 of 11)	1592.0	NM_138599	28185.0	Mm.196933	NM_138599	ENSMUSG00000022752	Tomm70a	2610044B22Rik|D16Ium22|D16Ium22e|D16Wsu109e|Tom70|Tomm70|mKIAA0719	translocase of outer mitochondrial membrane 70A	protein-coding	5.20304312947014	4.99519359764285	5.17235059398528	4.9461068680877	5.35554042371686	5.14156696448858	5.50325516833072	5.10326031809946	0.410531919953696	0.177369465650539	0.472726881400799
Merged-chr10-60346829-4	chr10	60346749	60346949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159572)	promoter-TSS (NM_001159572)	-2.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	7.20024208946238	7.29737681521144	7.30794455154544	7.09212389205327	6.99119305122927	7.32167412854719	6.97443453773501	7.49183065260123	-0.0196390447741518	0.924227071215644	0.971949015831349
Merged-chr3-99981221-1	chr3	99981121	99981321	+	769.0	f0_balb.idr	intron (NM_028892, intron 4 of 48)	GSAT_MM|Satellite|Satellite	95804.0	NM_028892	74362.0	Mm.55847	NM_028892	ENSMUSG00000027867	Spag17	4931427F14Rik|PF6|Spag17-ps	sperm associated antigen 17	protein-coding	4.3916501721532	3.85574348481921	4.28169548908648	4.72464162660595	3.35868420392456	3.49412877137852	3.28560427402832	3.87414841291269	-2.51704654145592	1.07823877577573e-05	0.000294913816852381
Merged-chr5-33203785-4	chr5	33203678	33203878	+	929.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14460.0	NM_133903	100689.0	Mm.34694	NM_133903	ENSMUSG00000037379	Spon2	2310045I24Rik|AI504350|M-spondin|Mindin|Mspondin	spondin 2, extracellular matrix protein	protein-coding	4.8197702917463	4.84484989140893	4.34971510065427	4.65794675955475	5.19751146093081	4.62816398991058	4.72433104328677	4.85266230545427	0.412876985027293	0.260933310181103	0.572853883315165
Merged-chr15-12376334-4	chr15	12376245	12376445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081064, exon 19 of 24)	exon (NM_001081064, exon 19 of 24)	54849.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	5.91367554432378	5.55143993966705	5.97727973134136	5.86344888686686	5.52227203492999	5.74913501355185	5.48786358032645	5.77523247834888	-0.332939237163891	0.214087030147455	0.519761043473936
Merged-chr7-121259028-3	chr7	121258943	121259143	+	822.138916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133253.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	3.72255677784217	3.6829889954866	3.7230583617497	3.73499954945713	4.19535705242511	3.78531031358613	4.12303443165021	3.7210297207379	0.75084692365391	0.099302181438777	0.345652676694285
Merged-chr19-32186997-3	chr19	32186898	32187098	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	24015.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	5.85689937559139	6.01119369087146	5.13320434684628	5.73796932416715	5.50454959341907	5.92040695035211	5.03207618750571	5.12973125814234	-0.477540705882893	0.179008283328698	0.475044016070888
Merged-chr5-86190931-4	chr5	86190823	86191023	+	781.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310653, intron 1 of 1)	intron (NM_001310653, intron 1 of 1)	6978.0	NM_001310653	14715.0	Mm.26791	NM_010323	ENSMUSG00000029255	Gnrhr	-	gonadotropin releasing hormone receptor	protein-coding	4.03182338049577	4.02047108125578	4.18917293076036	3.85757805054673	4.70996299954674	4.62790615437952	4.7494653997719	4.37011202593498	1.46593043183528	0.0001381396214168	0.00266507250981142
Merged-chr12-33159521-3	chr12	33159398	33159598	+	756.083313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	11812.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	3.30329893223228	3.37780881925189	3.24451134944676	3.17496353371763	3.58754608457842	3.35636090217963	3.40079614352048	3.1810275281151	0.447424293487108	0.398116212216927	0.696335068389275
Merged-chr11-88145922-3	chr11	88145821	88146021	+	693.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198013, intron 1 of 10)	intron (NM_198013, intron 1 of 10)	-23644.0	NM_001172099	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	3.36797934376299	3.7922599702548	3.23548478941109	3.69928396828677	3.46660392469056	3.66230252010489	3.68633159449765	3.74789552363567	0.274233160551481	0.603009260759122	0.827895617176754
Merged-chr2-66410203-4	chr2	66410095	66410295	+	911.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313997, intron 1 of 26)	intron (NM_001313997, intron 1 of 26)	30642.0	NM_018733	20265.0	Mm.439704	NM_018733	ENSMUSG00000064329	Scn1a	B230332M13|Nav1.1	sodium channel, voltage-gated, type I, alpha	protein-coding	4.54360995393891	4.7549225368674	4.80226237941877	4.86415771183609	3.98123602512392	4.54671753442742	4.20386229078912	4.62048130509592	-0.907149649706813	0.0231624660584129	0.141033462067731
Merged-chr5-54060251-3	chr5	54060154	54060354	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 2 of 11)	intron (NM_001081103, intron 2 of 11)	61731.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	3.8814295645833	3.54568920278934	4.09818002149383	3.97090045252339	3.64628724896557	3.85134902493562	3.60768262765599	3.56047524435016	-0.661502115749698	0.17209109112809	0.465316858575778
Merged-chr17-80565230-4	chr17	80565138	80565338	+	935.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360144, intron 1 of 9)	MMERVK10D3_I-int|LTR|ERVK	-1404.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	4.95684926011533	5.4065809730055	5.23829305313423	4.68693807659229	5.0417147401817	4.58614784105546	5.00100869987585	4.68370346863363	-0.473694060056781	0.203635467561326	0.506608260653162
Merged-chr10-75954698-4	chr10	75954603	75954803	+	649.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198635, intron 1 of 13)	intron (NM_198635, intron 1 of 13)	189.0	NM_198635	333669.0	Mm.31077	NM_198635	ENSMUSG00000033255	Gm5134	EG333669	predicted gene 5134	protein-coding	3.11130630754211	3.26746327457143	2.97619601802497	3.16004101296489	3.16896380968726	3.46191296269023	3.57415422341857	3.17303545939996	0.794681576153906	0.156257055257135	0.442129946579249
Merged-chr7-90130232-4	chr7	90130126	90130326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146194)	promoter-TSS (NM_146194)	13.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	8.85613136715135	9.05878223319817	9.03471228198473	8.83487521450387	8.90273149810435	9.37442352703258	9.07128179281702	8.95833535420695	0.172139742143329	0.301741423829776	0.613927875794066
Merged-chr3-32698460-4	chr3	32698346	32698546	+	864.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10100.0	NM_019673	56456.0	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	3.81249148819515	4.26613421375893	4.07043724081666	4.15844593866461	4.00697031658217	3.8132255801036	4.22507696353123	4.06798163887402	-0.149979227329206	0.730505874283602	0.893127409617056
Merged-chr5-64680216-4	chr5	64680131	64680331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69532.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	5.71733661970024	5.83970593818418	5.76867582617608	5.90441249970081	5.77956933762824	5.76024566894342	6.11753515679105	5.68838641309062	0.045493036414573	0.859465043763232	0.946818893549543
Merged-chr15-57818919-2	chr15	57818819	57819019	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 2 of 3)	intron (NM_199449, intron 2 of 3)	73499.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	3.38214539160554	3.26134472011412	3.26610572719533	3.17845145539447	3.48664399612405	3.49702301006717	3.25452668736536	3.53753428013169	0.647215705113518	0.207484937979718	0.511447929091922
Merged-chr13-74597181-3	chr13	74597070	74597270	+	804.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42683.0	NM_030711	80898.0	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	A-LAP|ARTS-1|Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	3.32158176020031	3.21800617142484	3.44423426000261	3.39211963355088	3.64912670863239	3.56024106969675	3.7818965669756	3.79692944823743	1.13719406366099	0.0210183375725819	0.132406582852884
Merged-chr6-101552350-4	chr6	101552248	101552448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-174451.0	NM_018884	55983.0	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	5.22836570873561	5.45054413636793	5.60148580183014	5.24493239669353	5.35342059692895	5.72194751364346	5.57324018900391	5.29012565752049	0.191878149301261	0.512039675710463	0.775675608570773
Merged-chr2-144165510-4	chr2	144165420	144165620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	23770.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	5.65512092199906	5.88093092551834	6.37104181984684	6.02991105583911	5.93392074484509	6.14120104800775	6.12345965101411	6.50683645381175	0.274871939990071	0.318473166307654	0.630348743245996
Merged-chr15-77970955-4	chr15	77970809	77971009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018749)	promoter-TSS (NM_018749)	-85.0	NM_018749	55944.0	Mm.3955	NM_018749	ENSMUSG00000016554	Eif3d	66/67kDa|AA407891|Eif3s7|eIF3p66	eukaryotic translation initiation factor 3, subunit D	protein-coding	6.39007026782833	6.89809689404384	6.49918904209942	6.26730561896744	6.93251715029304	6.89616203629761	6.49980903974487	6.81272626990236	0.385979994473727	0.109265129639417	0.36506677913087
Merged-chr4-133297861-2	chr4	133297787	133297987	+	688.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_199306, intron 12 of 15)	intron (NM_199306, intron 12 of 15)	-20097.0	NR_110978	52174.0	Mm.244748	NM_025667	ENSMUSG00000028857	Tmem222	5730406H10Rik|AA409341|D4Ertd196e	transmembrane protein 222	protein-coding	2.771526274523	2.80567977099975	2.62698191393417	2.73050255829508	2.88303980323556	3.18974515859821	3.11679962290047	2.96194989545362	1.33225602885373	0.0294433821801585	0.165175796043624
Merged-chr5-99452187-4	chr5	99452139	99452339	+	709.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-199312.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.71813431169685	3.39240685432746	3.36407656871801	3.40123058123373	3.22039173682007	3.59196883786054	3.2309479574168	3.36231487381008	-0.411346678804724	0.44081249871027	0.728164773822774
Merged-chr5-117520180-2	chr5	117520080	117520280	+	965.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 3 of 19)	intron (NM_001312914, intron 3 of 19)	106178.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	2.83349441745577	2.73950974141634	3.11082653615863	2.73897142765479	2.63707592909941	2.81048820282442	2.6955443023312	2.83241313556884	-0.545404207197285	0.398840853849427	0.696938506803859
Merged-chr4-95884961-3	chr4	95884864	95885064	+	836.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 14 of 15)	intron (NM_001113412, intron 14 of 15)	82071.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	3.96195752575364	3.71300342904497	4.56565726127254	4.32948493277937	3.67538961483842	3.66461090126856	4.33693746275198	4.05907311391402	-0.571086492293855	0.270445269390143	0.582296242549812
Merged-chr11-83595917-4	chr11	83595806	83596006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 1 of 8)	MLTR14|LTR|ERV1	-2819.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	6.01161601375363	6.15791358247458	5.33586343429784	5.82728542584785	6.238735038957	5.77221513806635	6.12009068153326	5.89880396315437	0.250692191178767	0.385937541913962	0.687298864016961
Merged-chr4-33148019-3	chr4	33147956	33148156	+	864.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008075, intron 2 of 9)	B3|SINE|B2	15500.0	NM_008075	14408.0	Mm.14116	NM_008075	ENSMUSG00000028280	Gabrr1	GABA-C	gamma-aminobutyric acid (GABA) C receptor, subunit rho 1	protein-coding	3.63889459119161	3.63760514925173	3.46992496368847	3.57298119281867	3.77385661814581	3.90880006379507	3.57142767291018	3.5270508056221	0.384240037088012	0.420607761462627	0.713388099239967
Merged-chr4-145283595-1	chr4	145283495	145283695	+	556.0	f0_balb.idr	intron (NM_009401, intron 10 of 12)	intron (NM_009401, intron 10 of 12)	31552.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	2.73951046341753	2.82930719201416	2.79737865690028	2.76002355159781	2.3243899784807	2.34699922853762	2.60760999270367	2.47923400495489	-1.98977547644892	0.00915710476645194	0.0740842873574997
Merged-chr2-167860711-4	chr2	167860622	167860822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71605.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	7.1741496616944	6.2172581724002	6.98645285234612	7.38032023352344	6.30179445132	6.28352753767601	6.92681839087929	6.66987393788788	-0.623943397498288	0.035927121051533	0.188323901419962
Merged-chr6-130937066-3	chr6	130936970	130937170	+	866.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_3-LTR_MM|LTR|ERVK	310292.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	4.53016720962978	4.3826129994986	4.27075184537946	4.44884730130483	3.67077334282842	3.69926288793386	3.87280071277883	3.82959849688366	-1.79075008562068	5.3455038022136e-05	0.00119989787176841
Merged-chr13-54578332-4	chr13	54578228	54578428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019968, intron 2 of 3)	intron (NM_019968, intron 2 of 3)	3315.0	NM_019968	56795.0	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	6.03135020244743	5.78614760905308	5.75253391633326	6.1106699507192	5.96064594661364	5.98010042933891	6.04251925907201	6.10905199762462	0.123762215740401	0.617325648602802	0.835468348897191
Merged-chr3-65484591-4	chr3	65484493	65484693	+	988.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43854.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	5.46053795303172	5.23458344889587	5.56963449964188	5.73371408460067	5.52976525930432	5.42413779464446	5.77533911320006	5.06480355839334	-0.0809248848984029	0.794673290504862	0.920584812443453
Merged-chr16-13160468-4	chr16	13160378	13160578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50742.0	NM_015769	50505.0	Mm.287837	NM_015769	ENSMUSG00000022545	Ercc4	AI606920|Xpf	excision repair cross-complementing rodent repair deficiency, complementation group 4	protein-coding	7.49845707068681	7.16406598348212	7.62642316224022	7.44837345635519	7.26236145234241	7.42124979437539	6.9016022364647	6.95930933931019	-0.388061583479745	0.0664858745104294	0.27483512971027
Merged-chr15-76659822-4	chr15	76659732	76659932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358912)	promoter-TSS (NM_001358912)	-26.0	NM_001358910	16581.0	Mm.378950	NM_010630	ENSMUSG00000004187	Kifc2	-	kinesin family member C2	protein-coding	7.60591472791657	7.74117658112984	7.44951401721187	7.65097887688916	7.58160704114107	7.9087199646415	8.06494441534301	7.35315986748913	0.178412202614452	0.392308181097773	0.691858576902415
Merged-chr1-69687208-4	chr1	69687089	69687289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1229.0	NM_011770	22779.0	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	5.28691349354828	5.2987847849822	5.25711722512564	5.55936580941478	5.18968763431014	4.91106331691818	5.57885825886255	5.22206814716733	-0.219115278158095	0.485277219510244	0.759216653544759
Merged-chr9-60999260-4	chr9	60999178	60999378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-17791.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	6.41209571724307	6.17249385123009	6.51190287788181	6.7069577302966	6.17784901574884	6.4444708454501	6.05145147685826	6.24446910590227	-0.365609767850856	0.131746115371648	0.404170189899083
Merged-chr18-64594535-2	chr18	64594435	64594635	+	856.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001488, intron 2 of 27)	intron (NM_001001488, intron 2 of 27)	66465.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	2.84224547171582	2.8198799138846	2.99716453326899	2.59022213435314	2.47736789597653	2.32741021191901	2.382265545656	2.30784744895219	-2.62289639284924	0.00210228766854597	0.024299891841415
Merged-chr16-36828371-4	chr16	36828265	36828465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113401)	promoter-TSS (NM_001113401)	-35.0	NM_177128	320299.0	Mm.222934	NM_177128	ENSMUSG00000022837	Iqcb1	6820449I09Rik|AV128382|NPHP5	IQ calmodulin-binding motif containing 1	protein-coding	6.99913076820853	6.90625682763945	6.88591723487045	7.17472351192267	6.67968622774433	6.74756769418962	6.89017327953364	6.69491625137006	-0.358000595058051	0.074894317304358	0.295210023890071
Merged-chr2-127524583-4	chr2	127524457	127524657	+	989.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2463.0	NR_110989	56461.0	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	4.72357145687012	4.80329161560959	4.80930768437147	4.11650951606987	5.3252909758673	5.21335417750037	5.70625174563324	5.58495224163243	1.63857672114289	4.34731470719155e-06	0.000130895733309301
Merged-chr17-5303366-7	chr17	5303293	5303493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 8 of 19)	intron (NM_001085355, intron 8 of 19)	115374.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	4.80974796077677	4.78631722714148	4.84679673909115	4.8598322379358	4.78998635844629	4.40162890434772	4.957830168609	5.01047302718841	-0.0297528624132527	0.93140603211006	0.975279137937273
Merged-chr7-80641591-4	chr7	80641337	80641537	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040343, intron 4 of 4)	intron (NR_040343, intron 4 of 4)	5420.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	3.81410049379078	3.38117435436145	3.71321400445558	3.4772188576135	4.16098003785819	3.66083056677119	3.69836718972545	4.03295951599688	0.964367214540239	0.0509438613427424	0.23414044724705
Merged-chr16-4558086-4	chr16	4557979	4558179	+	927.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031182, intron 1 of 6)	intron (NM_031182, intron 1 of 6)	1641.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	4.38609876932297	4.28098976017364	4.29694898866957	4.45609591476865	4.30525409878744	4.51598969463324	4.73622278500403	4.33995958702601	0.268044436731062	0.481650291457021	0.756747719248844
Merged-chr17-53479836-1	chr17	53479736	53479936	+	1000.0	f0_balb.idr	intron (NM_025887, intron 1 of 5)	CpG	602.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	5.71660639874304	6.27313928042333	6.45052130839976	6.05654330247449	5.97231891055266	6.28156761009649	6.09477701741026	6.47721436600575	0.0997361094613995	0.711793482657094	0.884648604581564
Merged-chr9-55390404-3	chr9	55390304	55390504	+	841.8777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172923, intron 3 of 10)	RCHARR1|DNA|hAT-Charlie	63491.0	NM_001357568	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	4.24902279154076	4.13883288043987	4.66831013191978	4.35168821076901	3.75052460099596	3.67548022530737	3.79432337905124	3.8070194788904	-1.67143467040135	0.000260751074508078	0.00452462231409324
Merged-chr18-23997051-4	chr18	23996954	23997154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011755, intron 2 of 2)	intron (NM_011755, intron 2 of 2)	7420.0	NM_011755	22694.0	Mm.290596	NM_011755	ENSMUSG00000063281	Zfp35	Zfp-35|Znf271|mszf13|mszf20-1|mszf28|mszf68	zinc finger protein 35	protein-coding	7.42380678573592	7.29556645192829	7.00951698676776	7.8171701267999	7.37429647703942	7.16081858139045	7.23647081512944	7.49411760876115	-0.148074581678927	0.514368097047162	0.776966017760127
Merged-chr6-124683825-4	chr6	124683701	124683901	+	838.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 1 of 11)	MIR3|SINE|MIR	20697.0	NM_145130	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	3.98908681953544	4.18104742767649	4.23804018268351	4.03535492213219	4.23460327751495	4.36526395962137	4.46258002065805	4.44325589782916	0.654699747097205	0.0924662545703021	0.332675673981982
Merged-chr7-28214342-4	chr7	28214247	28214447	+	833.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34031.0	NM_001271370	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	4.28604745045182	3.70006142346488	3.8329725790797	4.25583096005095	4.17619560597964	4.27900725118305	4.62983280016604	4.28397398565073	0.732445615259516	0.105947069658842	0.358568953081721
Merged-chr9-83652942-4	chr9	83652838	83653038	+	893.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38537.0	NR_046066	100039222.0	Mm.405596	NR_046066	ENSMUSG00000100155	Gm2109	-	predicted gene 2109	ncRNA	4.50490127936708	4.20458120378905	4.09406742482424	4.28030741945753	4.16662971517757	4.06253786443698	4.29670168905637	3.69929232955244	-0.507417650235795	0.247181419885216	0.558171577234536
Merged-chr19-10801257-4	chr19	10801152	10801352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009852, intron 1 of 12)	intron (NM_009852, intron 1 of 12)	28806.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	6.55356867208442	6.85039676341411	6.68155759364458	6.73299121120261	6.80065316678714	6.64533873987232	6.64756447034949	6.80580939502442	0.0251486561954211	0.901371846178241	0.963342914941175
Merged-chr11-23679377-4	chr11	23679237	23679437	+	978.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 4 of 17)	intron (NM_001033654, intron 4 of 17)	13361.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	5.23795362549291	5.29679696205659	4.84355905276838	5.01962396412587	4.84861543085848	4.72357296441594	4.85861519899812	5.2628737181165	-0.334808639027848	0.323088096158726	0.634559962376369
Merged-chr1-136569736-4	chr1	136569650	136569850	+	982.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55151.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	4.61171160410601	4.92331413513462	5.01516584743614	4.89628374480001	4.57098827617414	4.56009347093746	4.82447945350266	5.07280647760272	-0.210487517964797	0.551714976815728	0.799073691139046
Merged-chr3-157534354-6	chr3	157534246	157534446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152231)	promoter-TSS (NR_152231)	181.0	NM_001355386	53861.0	Mm.259036	NM_017381	ENSMUSG00000028180	Zranb2	AI227013|Zfp265|Zis|Znf265	zinc finger, RAN-binding domain containing 2	protein-coding	7.24395414744205	7.42256283528599	7.47287648584891	7.25840410346494	7.29418513326534	7.85858003649805	7.60337813821763	7.83396247586708	0.41070384710498	0.0413306066546494	0.205826016306674
Merged-chr15-74918630-4	chr15	74918518	74918718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36433.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	5.2428686649292	5.2889249329714	5.17247411789316	4.85974802295728	6.24988141955416	5.90477856360272	5.97512943430834	5.72583852004966	1.45957683286426	3.36870419151005e-07	1.29331712862726e-05
Merged-chr12-26356379-4	chr12	26356296	26356496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130981, intron 2 of 4)	intron (NR_130981, intron 2 of 4)	9686.0	NR_130981	75243.0	Mm.444753	NR_130981	ENSMUSG00000114048	4930549C15Rik	-	RIKEN cDNA 4930549C15 gene	ncRNA	5.34945212047646	6.08266605751224	5.7363124360038	5.13261916585539	5.19969472988469	5.64042341217364	5.23055977761099	4.48963599422056	-0.747310915028346	0.0647969899828558	0.270699903157043
Merged-chr9-50773784-2	chr9	50773684	50773884	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-1441.0	NM_133981	102580.0	Mm.160035	NM_133981	ENSMUSG00000032059	Alg9	8230402H15Rik|AI747665|B430313H07Rik|Dibd1	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)	protein-coding	3.68116920234487	3.47693712655136	3.24708834778755	2.5513371989665	3.36468371802934	3.75782720210721	3.51917848068665	3.11093973504116	0.438700365025722	0.538523440011697	0.791663601821445
Merged-chr2-168905004-2	chr2	168904904	168905104	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	50583.0	NM_009564	22722.0	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	2.52977423414751	2.32886953146822	2.38221532943365	2.28056045876383	2.87288363370449	2.70642675952095	2.88167442037521	2.72376599158005	2.32847999600978	0.000736161151555204	0.0105355852668758
Merged-chr4-95050104-4	chr4	95050010	95050210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010591, exon 1 of 1)	3' UTR (NM_010591, exon 1 of 1)	2112.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	6.55496921338839	6.49892783647096	6.36197397253781	6.7054746877372	6.55858846821768	6.52072732258048	7.13933552738905	6.59955837729653	0.263892704717672	0.271319070002719	0.583098432479576
Merged-chr2-84961520-4	chr2	84961435	84961635	+	854.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18926.0	NM_008920	19074.0	Mm.142727	NM_008920	ENSMUSG00000027073	Prg2	EMBP|MBP|mMBP|mMBP-1	proteoglycan 2, bone marrow	protein-coding	3.94413602295684	3.74921810173172	4.47947550692953	3.97943653202401	4.36402083378799	4.17603687740424	4.38357803096815	4.3220127385785	0.641206173819187	0.138488375949442	0.413987825446446
Merged-chr2-25228712-4	chr2	25228543	25228743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_080854)	TTS (NM_080854)	-3941.0	NM_146116	227613.0	Mm.227260	NM_146116	ENSMUSG00000036752	Tubb4b	4930542G03Rik|Tubb2c|Tubb2c1	tubulin, beta 4B class IVB	protein-coding	5.79310552382931	6.14437941833356	6.01947849539515	5.71348320756934	5.71957194007522	6.01778889046459	5.78900882473957	5.88495520197705	-0.110385888496009	0.672267215574347	0.865100575585603
Merged-chr13-51734797-4	chr13	51734700	51734900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281880, intron 2 of 16)	intron (NM_001281880, intron 2 of 16)	58947.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	6.64471586892271	6.42717715667199	6.73182225661302	6.60925240041787	6.35430168687499	6.42571681517213	6.3134467744206	6.58043798856589	-0.272382588080221	0.205333901319566	0.508859472252119
Merged-chr7-89248288-4	chr7	89248165	89248365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 4 of 14)	intron (NM_001360746, intron 4 of 14)	90522.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	6.56825330328703	6.07168581867492	6.16404076564695	6.47826559082408	6.12594408986456	6.18788144713607	6.62260824710343	6.40438250971602	0.00453728849099194	0.985638270496002	0.994721627180638
Merged-chr7-105777906-4	chr7	105777813	105778013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162943, intron 1 of 20)	intron (NM_001162943, intron 1 of 20)	9637.0	NM_001162943	233651.0	Mm.334108	NM_001162943	ENSMUSG00000036862	Dchs1	3110041P15Rik|C130033F22Rik|CDH25|FIB1|Gm165|PCDH16	dachsous cadherin related 1	protein-coding	6.57122038388041	6.00191181401508	6.50987578222154	6.7803123881502	6.02833102705205	6.25224150301844	6.49237245723471	6.40524848473625	-0.305415946592443	0.24801763722917	0.559137354284593
Merged-chr2-13538430-4	chr2	13538347	13538547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010067, intron 1 of 10)	MIR|SINE|MIR	6217.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	7.39227220105075	7.44535445518935	7.5638308184887	7.39558910486852	7.59240559533983	7.50868887658687	7.76652909299437	7.59350383513684	0.227602928480198	0.185941867030318	0.483870824275444
Merged-chr5-28071209-4	chr5	28071115	28071315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153526)	promoter-TSS (NM_153526)	-197.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	9.13456274397771	9.17866842935982	9.18023945065246	8.98429459000275	9.13796749664419	9.20282490229584	9.20647985904868	8.93932550874582	0.00928900516264921	0.949586921636847	0.981966382768546
Merged-chr2-169928777-7	chr2	169928678	169928878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34409.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	5.57877400335625	5.41621726170033	5.75588475648001	5.14760985709199	5.78107875315478	5.83260343327084	5.74962665922581	5.67935018250069	0.494385341582865	0.0810508011112173	0.308839131279194
Merged-chr1-85703816-4	chr1	85703726	85703926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013673, intron 17 of 19)	intron (NM_013673, intron 17 of 19)	32780.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	8.26859204661805	8.44621149674568	8.02582282484294	8.10545455226982	8.23295206897337	8.34700461941348	8.36027230384661	8.28143972594098	0.107606636440503	0.519227149405179	0.779936463670941
Merged-chr5-31754810-4	chr5	31754701	31754901	+	883.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 3 of 11)	ORR1E|LTR|ERVL-MaLR	56751.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	4.32872617396369	4.14996852017428	4.23915882422421	4.73910057992516	4.05160363653878	4.10640783319439	4.30993187108457	4.63406982148154	-0.259075178189664	0.554102773798238	0.800538207856535
Merged-chr10-86885069-6	chr10	86884973	86885173	+	910.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 43 of 68)	intron (NM_138673, intron 43 of 68)	106068.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	4.02504920623801	3.5449798610123	4.06894250758467	3.71858934682764	3.8054809496011	3.67019820489639	3.91725843483718	4.02312923959689	0.0371587494568382	0.937418157510766	0.977334367260951
Merged-chr8-105265418-4	chr8	105265318	105265518	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033161)	promoter-TSS (NM_001033161)	770.0	NM_015821	50788.0	Mm.334764	NM_015821	ENSMUSG00000033313	Fbxl8	FBL8	F-box and leucine-rich repeat protein 8	protein-coding	5.06582095533172	4.74982224550089	4.93933743246585	4.93719777777258	4.81076444841302	4.9321521474017	4.65750486530666	4.71610100325697	-0.293160545603528	0.374200681221617	0.677586056340113
Merged-chr7-31151688-4	chr7	31151620	31151820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360351)	promoter-TSS (NM_001360351)	-549.0	NR_153431	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	7.99933133339947	8.47446173793167	8.26369999693234	7.51336064538771	8.16696334943024	8.37937746283824	8.04124657121253	7.38461633630756	-0.0825355084574585	0.754579461084723	0.903375855025642
Merged-chr6-37867066-4	chr6	37866951	37867151	+	854.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3760.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	3.77065994285208	3.87006725439605	4.03237085678663	4.05837678168719	3.83825279662527	3.70538395051175	4.51037092453808	4.16435629556401	0.391530636121364	0.411245613538812	0.7066617948019
Merged-chr5-123682569-4	chr5	123682454	123682654	+	938.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	1807.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	4.93866173033552	4.89181107467077	4.90523718714299	5.1510216054577	4.71620231805072	4.68007170393817	4.98080962000907	4.54421958893699	-0.505828524020162	0.135947413865556	0.410349387415563
Merged-chr12-108642264-4	chr12	108642160	108642360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	6507.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	4.93593612657169	5.08322272137163	4.97207529291734	4.51317139264594	5.15825580497907	5.2447346974321	4.94799120530766	4.96870842190929	0.416357738498469	0.221422593539373	0.529466124713094
Merged-chr3-100440169-4	chr3	100440079	100440279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13774.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	6.75373128785547	6.14296488084239	6.76992803587959	7.39058437480601	7.24890607771011	6.88701548666826	7.2711443682623	7.19096567617677	0.417904471074506	0.142105750368892	0.419498077038414
Merged-chr3-104994779-4	chr3	104994643	104994843	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33034.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	4.30859435039546	4.4092943665674	4.57161580121314	4.82608950037262	4.12474082285731	4.38913056558525	4.51039462868625	4.99889724406106	-0.028899038062119	0.94610218836042	0.980798527043101
Merged-chr2-93518000-2	chr2	93517900	93518100	+	746.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55050.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	3.1191386700113	3.01289337119075	3.33232085099228	3.40117477179135	3.03078053510654	2.82097309376442	2.85658615788748	3.11791493749759	-1.09686210244888	0.0770167252088316	0.300004021432683
Merged-chr15-27715547-4	chr15	27715454	27715654	+	968.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34012.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	5.01726855341524	4.90761801096782	4.76395909563561	4.86492590348691	4.9547227680275	4.89998567606919	5.28332198389205	4.80035552796216	0.214394844662388	0.511592773145857	0.775539080797141
Merged-chr9-78109867-4	chr9	78109775	78109975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081490)	promoter-TSS (NM_001081490)	683.0	NM_001163780	56542.0	Mm.288719	NM_019987	ENSMUSG00000009828	Ick	2210420N10Rik|AI848300|Mrk	intestinal cell kinase	protein-coding	5.58751988384355	5.94219341111079	4.96511150215625	5.25099588538145	5.54635635388067	5.7100988817136	5.70617377605955	5.41827020168854	0.193290729722029	0.556656953258281	0.802199963024407
Merged-chr11-121680971-4	chr11	121680837	121681037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7786.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	7.60154664675699	7.39417838566451	7.00223405079144	6.82631711806253	6.91900094079996	7.11391718584487	7.12308579675487	7.11956200056131	-0.225572007319074	0.333899694459209	0.644625911590891
Merged-chr18-36018300-4	chr18	36018190	36018390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001167891, exon 10 of 10)	exon (NM_001167891, exon 10 of 10)	53460.0	NR_110349	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	6.83930961278703	6.84347918368234	6.43432065377042	6.6827123569392	6.68731782338342	6.66581245482344	6.88309324661666	6.75293355630229	0.0539546740233047	0.797295291874582	0.921600110017986
Merged-chr11-64837955-4	chr11	64837855	64838055	+	913.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-141080.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	4.66742018940537	4.56030495238615	4.22894430221556	4.55768042967168	4.39850150689218	4.24850601316734	5.05113811443677	4.70170526480648	0.262161400956541	0.518021929162883	0.779244323426283
Merged-chr3-53466709-4	chr3	53466632	53466832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173382, intron 1 of 12)	intron (NM_173382, intron 1 of 12)	2915.0	NM_173382	212127.0	Mm.491292	NM_173382	ENSMUSG00000049504	Proser1	2810046L04Rik|9330161F11	proline and serine rich 1	protein-coding	5.94293522951177	6.2343336135635	5.75379724078876	5.72115358089859	6.10947106995726	5.87851909205178	5.89152483015923	5.74973023906664	-0.000782905974177483	0.99766516989116	0.999032258328017
Merged-chr5-9101624-3	chr5	9101522	9101722	+	968.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	885.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	4.10922481066462	4.61514059664155	4.21042475996004	3.55177335263566	4.66189770954304	4.98605244329244	4.32783910381761	3.75289981009096	0.739777932528385	0.1686012498047	0.460861267857296
Merged-chr2-129197848-3	chr2	129197785	129197985	+	951.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159593)	promoter-TSS (NM_001159593)	-888.0	NM_015747	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	3.30118743940119	3.53606830319715	3.23644852828477	3.33819416330299	3.74627203432697	3.41489972111795	3.66846373860435	3.6823875186518	0.918936515840636	0.0676550413078966	0.277637254843169
Merged-chr16-90934934-4	chr16	90934837	90935037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026502)	promoter-TSS (NM_026502)	-88.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	8.48612245469341	8.43910017762862	8.08384414804534	8.10091124886243	8.25678384565943	8.39929055293499	8.40436381135881	8.03814537175969	-0.00621325282291743	0.972854971716142	0.990230859885361
Merged-chr1-119495201-4	chr1	119495164	119495364	+	876.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022327, intron 1 of 4)	intron (NM_022327, intron 1 of 4)	9518.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	3.70083377613363	3.74498005233481	3.55110884633981	3.45424039831318	3.35820441741307	3.49510277955931	3.36887544123543	3.43832762155453	-0.668905195087489	0.186271507444392	0.484125681380109
Merged-chr7-100706412-7	chr7	100706326	100706526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362169)	promoter-TSS (NM_001362169)	-209.0	NM_001362169	319604.0	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	6.58718180734903	6.84312038301769	6.83083094253171	6.56757741491092	6.68053479841258	7.0999038014603	6.78230455467639	7.20352516668181	0.344197968792466	0.122891395994786	0.388578325063874
Merged-chr2-30392273-4	chr2	30392179	30392379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290508)	promoter-TSS (NM_001290508)	25.0	NM_001290508	57170.0	Mm.285167	NM_020329	ENSMUSG00000026856	Dolpp1	0610011H20Rik|AB030189|LSFR2	dolichyl pyrophosphate phosphatase 1	protein-coding	8.69661994688918	8.77885198838184	8.60553646233059	8.5726628139383	8.51833888080421	8.61734120743483	8.60647930879085	8.32514470769443	-0.178940034168645	0.248007386177161	0.559137354284593
Merged-chr7-80406379-3	chr7	80406241	80406441	+	688.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081454)	promoter-TSS (NM_001081454)	-905.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	3.12194436218748	3.00556610735465	3.12238357339958	2.98666983376218	2.93143120420071	2.79073430025237	2.81867339275475	2.82590472302508	-0.941132173091657	0.124708893214812	0.392071138182701
Merged-chr12-108894231-4	chr12	108894143	108894343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177602)	promoter-TSS (NM_177602)	-29.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	8.21499069717108	8.17072726204153	8.09245633663401	8.34704862476006	8.32634289260204	8.2029550455047	8.40295443521246	8.04755728945935	0.0497015886798373	0.76460944937252	0.907764886360986
Merged-chr5-24039036-4	chr5	24038940	24039140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8350.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	5.68532708733265	5.64766439995546	5.53135606730574	5.77834954595705	5.68503042394991	5.33017679113394	5.41906387346268	5.47135652839798	-0.301693403038439	0.270475741718683	0.582320012375668
Merged-chr10-117217445-4	chr10	117217362	117217562	+	794.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026570, exon 5 of 7)	exon (NM_026570, exon 5 of 7)	7045.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	3.71402633694491	3.57112006942234	3.29294633283137	3.34915637074265	3.93421131913501	3.93540343879768	3.74894371808045	3.81147562365625	1.16276545187225	0.0150420853113125	0.105036809600555
Merged-chr17-27178224-3	chr17	27178122	27178322	+	967.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A2B_MM|LTR|ERVK	-10458.0	NM_173027	271424.0	Mm.209679	NM_173027	ENSMUSG00000024210	Ip6k3	D830007E07Rik|Ihpk3	inositol hexaphosphate kinase 3	protein-coding	4.59074542269224	4.21855219856462	4.14559671198203	4.49882433114776	4.09119778919178	4.31973995771478	3.86306454402483	4.23660094396809	-0.610640442934872	0.146710395268094	0.427220370158867
Merged-chr7-111026666-3	chr7	111026561	111026761	+	669.472229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2290.0	NM_009431	22083.0	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	3.17495744683082	3.43992769566116	3.42404700363154	3.00068922346369	3.52749238230326	3.48237825675339	3.410452624305	3.85104100789314	1.08350915884713	0.045645682839586	0.218980525634487
Merged-chr19-6475504-4	chr19	6475384	6475584	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 9 of 22)	intron (NM_001205234, intron 9 of 22)	56746.0	NM_001205234	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	3.96724993002824	3.84589688343876	3.96785866030446	3.77706241369382	3.68224343673441	3.8916939091214	3.52859907549973	3.96539676969791	-0.322981181078373	0.484877084245203	0.758880279356098
Merged-chr2-167717010-4	chr2	167716927	167717127	+	985.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25850.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	5.11947585985008	5.66610675250604	5.08524846215876	5.06149321015387	5.21561904318286	5.67744737830631	5.02487195139541	5.36729537194103	0.147150329759158	0.661687067257838	0.85951937660314
Merged-chr15-12052404-3	chr15	12052289	12052489	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56382.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	4.2761414979407	3.72613518318329	3.87797057577365	4.78441433388627	3.56318407486778	3.64402956112725	3.63850187192116	3.76767190239192	-1.67544178046838	0.00174921271856345	0.0210814785124666
Merged-chr2-79653733-4	chr2	79653637	79653837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080558, intron 9 of 17)	intron (NM_080558, intron 9 of 17)	18312.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	7.40437170768059	6.59222237754767	7.71837017003293	7.90006507681955	7.31940405433748	7.06740499026674	7.67290091515592	7.72836020132182	-0.0306554226789141	0.915911093927485	0.968877649575957
Merged-chr15-90678691-4	chr15	90678594	90678794	+	952.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	694.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	5.0228533227487	4.86991451817818	4.48436524777211	4.90351809043631	4.58229215516513	4.36867898231523	4.2741807317727	4.76161375971464	-0.698377250895936	0.0643869641147801	0.269619838175437
Merged-chr10-62500396-4	chr10	62500305	62500505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	7352.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	5.87873370397377	6.16659700619445	5.24819971288469	5.96012864407815	6.27631796220122	6.34974661218476	6.21643658136617	5.75077501310364	0.477401008115518	0.113043879024155	0.371619021076811
Merged-chr8-41017749-4	chr8	41017641	41017841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015457, exon 1 of 3)	non-coding (NR_015457, exon 1 of 3)	273.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	6.83503162916597	6.97458495665602	6.99391459351395	7.23540942772785	7.63317988238806	7.67521413081782	7.72727594447691	7.69256128693305	0.864838831115182	4.14470931099237e-06	0.000125665508051761
Merged-chr14-103535860-4	chr14	103535741	103535941	+	865.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022886, intron 4 of 30)	intron (NM_022886, intron 4 of 30)	22500.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	4.78378566301296	4.85467863679695	4.78458279641237	4.81493555194123	4.34467637451643	4.50699652321503	4.44944252876445	4.51039021725603	-0.802303163568241	0.0214465098153933	0.134085319242654
Merged-chr15-53324473-4	chr15	53324379	53324579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	21704.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	5.55085659517121	5.59486412881019	5.73427328029692	5.80696993158959	5.99824586969592	5.45082764324672	5.72908102901526	5.5756346187024	0.0600678742877618	0.829034201228016	0.934333879868872
Merged-chr14-25371157-3	chr14	25371064	25371264	+	632.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88021.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	3.18049251792614	3.01374499249016	3.12658165552414	3.475309677232	2.91605877984567	2.92007948907256	2.73484086524128	2.81278979685621	-1.62729985617149	0.0121983270738229	0.0909463415510254
Merged-chr2-35451815-4	chr2	35451731	35451931	+	914.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	9618.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	5.61739428212209	5.18729539685247	5.66416662246315	5.84120677206781	4.6416572787013	4.88912755451399	5.01171410399252	5.17219793614694	-1.24736154204116	0.000176272581437012	0.00327253679554124
Merged-chr15-8722629-4	chr15	8722532	8722732	+	846.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11825.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	3.80655207078447	3.51667038801875	3.95672458942462	4.08176657102118	3.92797475904053	3.56122205762709	4.19140287113146	4.00047165326344	0.206402824157836	0.676607954958207	0.867222067684077
Merged-chr1-178330752-4	chr1	178330590	178330790	+	869.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016805, exon 11 of 14)	exon (NM_016805, exon 11 of 14)	7125.0	NM_016805	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	3.69241829341986	3.45936091792842	3.47182954478192	3.67743932149529	3.64834982030148	3.81110949976426	3.77419726805677	3.58514444050599	0.367477525690196	0.440426903921436	0.727848125054536
Merged-chr14-14065012-4	chr14	14064905	14065105	+	913.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139227, intron 4 of 11)	intron (NM_139227, intron 4 of 11)	52514.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	4.16687191885294	4.75277674021719	4.44807504755274	5.00526260239957	4.41058303593433	4.24100282862059	4.09775600908695	4.4452368082961	-0.776560556890814	0.0701656298903296	0.283607005676534
Merged-chr1-111864257-1	chr1	111864157	111864357	+	943.0	f0_c57.idr	5' UTR (NM_001081316, exon 1 of 2)	5' UTR (NM_001081316, exon 1 of 2)	661.0	NM_001081316	319901.0	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	4.60376940684876	4.58604471202564	4.72355530140137	4.89423350804063	4.63209262245207	4.81881727009104	4.58351023627385	4.89679504276083	0.024334233655368	0.944539832743354	0.980078147392623
Merged-chr16-10991177-4	chr16	10991086	10991286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	1935.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	5.52737586279419	5.61992484262539	5.76370762344068	5.93513015839259	5.98570172219563	5.14872974174434	5.95142013654783	5.60778079768785	-0.00677434240570239	0.982534002432382	0.993788814012798
Merged-chr1-181842028-1	chr1	181841928	181842128	+	1000.0	f0_balb.idr	intron (NM_133815, intron 1 of 13)	CpG	373.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	6.31757419062095	6.46565743372838	6.71910556576599	6.38207609237903	6.33047833486969	6.33577537251778	6.60013408729685	6.29518665828765	-0.116443731998014	0.607084805330755	0.829771416202606
Merged-chr10-14293091-1	chr10	14292991	14293191	+	587.0	f0_balb.idr	Intergenic	ERVB4_2-LTR_MM|LTR|ERVK	251945.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	2.98097896826792	3.08059656314641	3.40036868268598	3.04832334937057	2.68944052856468	2.8142426157375	2.77317011210712	3.09810693135906	-1.25775759220235	0.0529463949684303	0.240011575574057
Merged-chr11-69235367-4	chr11	69235267	69235467	+	957.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008192, intron 3 of 18)	C-rich|Low_complexity|Low_complexity	1655.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	5.01298726028217	5.51749103697365	4.79778735988605	4.64257137061886	4.93376474810522	4.81049880180108	4.98923518401988	4.71385428082681	-0.323137461012121	0.389880441425173	0.690126025603507
Merged-chr8-69017609-4	chr8	69017518	69017718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71118.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	5.90962925021643	5.87810059457888	5.91066747576379	6.18624730201943	6.26708415218696	6.08793437357868	6.44814940262785	6.2963962143292	0.440942266607259	0.0689211541807428	0.280552375239111
Merged-chr5-139832284-3	chr5	139832178	139832378	+	763.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5384.0	NM_025604	66506.0	Mm.29070	NM_025604	ENSMUSG00000029551	Psmg3	1810042K04Rik|4930403H09Rik|AI303239	proteasome (prosome, macropain) assembly chaperone 3	protein-coding	3.46017562174737	3.51739487719554	3.71125694459202	3.53988609814306	3.2924427154159	3.18826153874789	3.60142970403634	3.40224638455887	-0.615974901719732	0.238435182958438	0.548836356743826
Merged-chr13-113442409-4	chr13	113442288	113442488	+	891.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60456.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	3.40786652624949	3.30392944607649	4.04140899003501	4.02320425742175	3.35258200756772	3.98553910798063	3.93695688002305	3.86016237544001	0.186615460042486	0.746387332401823	0.900093249068673
Merged-chr17-35867175-4	chr17	35867073	35867273	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175242, exon 1 of 3)	5' UTR (NM_175242, exon 1 of 3)	558.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	4.75970345232512	4.64878534683203	4.8322940784606	4.41147895741805	4.76337760788376	4.89558534308163	4.73785028357634	4.68130975662512	0.248985300120618	0.475817511962038	0.752576821188496
Merged-chr9-95559945-4	chr9	95559897	95560097	+	984.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198414, exon 1 of 1)	exon (NM_198414, exon 1 of 1)	180.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	4.53216609771802	4.72801833207493	4.95578219765155	4.73099710103932	4.34902413943603	4.48345550574817	4.55295520103533	4.3980978426581	-0.668639325364803	0.0645541023088324	0.270044689525581
Merged-chr4-62502265-4	chr4	62502163	62502363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024257)	promoter-TSS (NM_024257)	-63.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	7.92275946193423	7.92197588476444	7.90475739143063	7.95383072064281	6.66913654515099	6.47602826825471	6.99327842639444	6.4595172801673	-1.69984072178188	1.37655772929744e-17	3.36707912761726e-15
Merged-chr17-12372203-4	chr17	12372109	12372309	+	944.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6400.0	NM_008877	18815.0	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	4.19623043334925	4.53049651897872	4.67380869386412	4.10289806600615	4.59793247491222	4.69279519729204	4.75447311062024	4.43271748707341	0.544807417052111	0.161958325230905	0.451018451940946
Merged-chr10-59899747-4	chr10	59899648	59899848	+	843.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20157.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	3.82304059152118	3.53997676837633	3.33237539326779	3.65147323776744	3.78665135831115	3.5735747936208	3.80662104342802	3.45687905936965	0.210901893412179	0.674442698181221	0.866144208984521
Merged-chr16-76371336-4	chr16	76371208	76371408	+	884.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	1741.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	3.6365684227502	4.53194728356122	4.00509010855007	3.92204701172774	3.90467781935161	3.62838618458791	3.79207198133433	3.63516945232477	-0.885132738897471	0.0829565490078557	0.312910863142771
Merged-chr11-77214931-3	chr11	77214826	77215026	+	625.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1499.0	NM_177710	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	3.20075708808389	3.38377094398157	3.08513651640568	3.16062285345413	2.98551148446423	2.92310194252221	3.1886695215387	3.02156849309063	-0.725587768559782	0.211258305637997	0.515854371766963
Merged-chr16-87706296-4	chr16	87706192	87706392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	7338.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	6.84331259057782	6.81772366471975	6.93838419972778	7.6305021793317	6.61050635114214	6.70876750212002	6.94121886205602	6.83965129691126	-0.480399656995773	0.0614482641575431	0.262314141445949
Merged-chr15-83430470-4	chr15	83430378	83430578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	2372.0	NM_011862	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	5.44704999383816	5.55475262166506	5.44799965029941	5.37176249027333	5.22662247426625	5.14870542338297	5.09114272837274	4.8458212254199	-0.658787031811606	0.0272901658887237	0.157426591927503
Merged-chr4-135876799-4	chr4	135876683	135876883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2937.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	8.29754421967493	8.2212990874234	7.9193393424042	7.78334965120157	8.06692364710959	8.12569027728644	8.05053392539284	7.86207699037548	-0.0456184538307589	0.8075332390027	0.925788142750869
Merged-chr12-103099365-4	chr12	103099236	103099436	+	693.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081017, intron 26 of 48)	intron (NM_001081017, intron 26 of 48)	142810.0	NM_133364	170952.0	Mm.217019	NM_133364	ENSMUSG00000041669	Prima1	B230212M13Rik|BB120497|PRiMA	proline rich membrane anchor 1	protein-coding	3.93216885655377	3.90266703959159	3.83068007766786	3.63918350066019	3.82044846653505	3.95211198145871	4.09642359807837	4.15442034969268	0.52784248037365	0.231243267625186	0.540724853688999
Merged-chr6-125088841-6	chr6	125088745	125088945	+	984.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7136.0	NM_001346610	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	5.59066633164656	5.0632926485566	5.59166233564301	5.26584937488346	4.69654441268464	4.7417686113048	4.88714117405451	5.36302772481459	-0.835059758210701	0.0176484744678964	0.117577757782703
Merged-chr15-36792637-4	chr15	36792515	36792715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253806, intron 1 of 5)	CpG	-1683.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	8.25517316618753	8.2920838396732	8.53322718896326	8.24661693547084	8.55871202304884	8.68216633914974	8.80791526322991	8.5466680623793	0.401390363545373	0.0121649329359708	0.0907924673848661
Merged-chr3-152478146-6	chr3	152478052	152478252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081277, intron 12 of 13)	intron (NM_001081277, intron 12 of 13)	81468.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	5.52055951169544	5.15588470869674	5.77562225910692	5.85804572514164	5.51822294347797	5.75140985319924	5.60091887497544	5.7005758090665	0.0377675468682655	0.898755789631411	0.962303043708153
Merged-chr4-8910530-4	chr4	8910422	8910622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	159198.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	5.94361879043695	6.10824077174279	5.84646310080547	5.8636165758698	6.26824294515382	6.23408574146581	6.50362367142913	6.44075925534147	0.649358980264671	0.00512462443869225	0.0483709909722419
Merged-chr10-79746638-4	chr10	79746539	79746739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172551)	promoter-TSS (NM_172551)	-58.0	NM_172551	216151.0	Mm.39001	NM_172551	ENSMUSG00000020329	Polrmt	1110018N15Rik|4932416K13	polymerase (RNA) mitochondrial (DNA directed)	protein-coding	6.97904167243497	7.43038032256348	7.01932048212244	7.1862539512449	7.42536510339985	6.9585649373991	7.48271302287128	7.10100780937942	0.130591092707378	0.546375398591534	0.796350145922542
Merged-chr4-98384769-4	chr4	98384666	98384866	+	987.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1501.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	4.87705484460599	5.11945658993645	4.99218813466678	5.19781294322556	5.26640542718942	5.39734289487715	5.2865209034508	5.12690989320701	0.377832459878656	0.212721520429119	0.517670706102327
Merged-chr2-18971762-4	chr2	18971633	18971833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	URR1B|DNA|hAT-Charlie	26388.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	5.06247540792906	4.80276597228718	5.19550865358717	4.98657539601009	4.98438898551286	5.43000927872473	5.13819564362257	5.67913532472245	0.581759469753247	0.0792118813219637	0.304554772355429
Merged-chr16-32499869-4	chr16	32499704	32499904	+	724.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199309, intron 6 of 8)	intron (NM_199309, intron 6 of 8)	3523.0	NM_199309	245308.0	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	3.57911435498103	3.71347047755757	3.68607051464941	3.39365574901475	3.8394130374236	3.80474445349752	3.39014802465251	3.63188225044386	0.291150185561184	0.557686697698514	0.802816324871987
Merged-chr8-121092824-2	chr8	121092724	121092924	+	864.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8438.0	NM_010426	15227.0	Mm.33897	NM_010426	ENSMUSG00000042812	Foxf1	AI450827|FREAC1|Foxf1a|Freac-1|HFH-8|Hfh8	forkhead box F1	protein-coding	3.56520829830658	3.47288003559128	3.66469797882565	3.25986558933585	3.2538233691478	3.51656556554235	3.44488724026121	3.51119842416911	-0.195454237949316	0.708008776306496	0.882703520735834
Merged-chr9-66883856-4	chr9	66883730	66883930	+	898.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	35875.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	4.20656061997518	4.15835795484283	4.56963561377716	4.32291984195474	4.31356106634851	4.28546369429249	3.99012508239583	4.29450739439713	-0.223477362279653	0.57976731983496	0.815474743074892
Merged-chr1-36244271-4	chr1	36244173	36244373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198899)	promoter-TSS (NM_198899)	29.0	NM_198899	320011.0	Mm.261022	NM_198899	ENSMUSG00000037470	Uggt1	0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik|GT|UGT1|Ugcgl1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding	7.88893427857779	7.98661859088208	7.77041380970378	7.9718575460251	8.06061324898472	7.78002987820408	7.41279464168278	7.4844062990825	-0.247668701591869	0.221085273176488	0.529157962925089
Merged-chr19-8713026-4	chr19	8712940	8713140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 2 of 9)	intron (NM_001161413, intron 2 of 9)	857.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	7.17104920998606	7.2832345899438	6.92423289437116	6.99350021361334	7.54729071838717	7.36002050942618	7.2021810283497	6.99861513006423	0.276481885432931	0.187081487512183	0.485314267518811
Merged-chr14-17569467-4	chr14	17569374	17569574	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91486.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	5.31141654515276	5.0683298490479	5.72347550606639	5.79346433246078	5.25686892656524	4.98061332109796	5.37331438291683	5.21413283990471	-0.540871663817431	0.0996300484211098	0.346218223703981
Merged-chr17-26942623-4	chr17	26942516	26942716	+	904.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281491, intron 1 of 18)	intron (NM_001281491, intron 1 of 18)	1164.0	NM_001281491	240057.0	Mm.328888	NM_001281491	ENSMUSG00000067629	Syngap1	Gm1963|Syngap	synaptic Ras GTPase activating protein 1 homolog (rat)	protein-coding	3.98595424094797	4.10147494324028	3.59215847816162	4.03831146333936	3.92317207888523	4.1093784240299	4.06237259632295	4.16509965962876	0.297362872756019	0.502797205320706	0.769945404189203
Merged-chr4-129671656-4	chr4	129671579	129671779	+	812.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008468, intron 1 of 13)	intron (NM_008468, intron 1 of 13)	1088.0	NM_008468	16650.0	Mm.202358	NM_008468	ENSMUSG00000003731	Kpna6	IPOA7|Kpna5|NPI-2	karyopherin (importin) alpha 6	protein-coding	3.45667804485379	3.53876091148826	3.57274239583244	3.46472988055711	3.71352692116447	3.63227435928182	3.80622708097457	3.77467370104665	0.716471623258766	0.123087960582889	0.389007542303628
Merged-chr6-17764506-4	chr6	17764396	17764596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	15326.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	6.97030164584225	7.34410965963635	6.86410003422945	6.95347181643762	7.12462114444499	7.23505883516657	7.03483257462455	6.71073126020778	-0.0066856190194344	0.975587442439537	0.991347073148764
Merged-chr17-70989678-4	chr17	70989583	70989783	+	967.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	833.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	4.81966989622707	4.46500645911043	4.78295844788657	4.76270296588869	5.14158029723298	5.19512595966679	4.868653890341	4.57425292410162	0.519992311939983	0.142024609323126	0.419334764888857
Merged-chr13-76130093-3	chr13	76129989	76130189	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081352, intron 18 of 43)	intron (NM_001081352, intron 18 of 43)	31355.0	NM_001081352	218343.0	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	-	tetratricopeptide repeat domain 37	protein-coding	4.74666289857885	4.93468163776923	4.84868212293924	5.44176372712597	4.00527981448464	4.01689769619284	4.05648080333399	3.88480135897744	-2.51033688780964	9.41096626744597e-09	5.01394586789324e-07
Merged-chr9-44986611-4	chr9	44986502	44986702	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013487, exon 5 of 5)	3' UTR (NM_013487, exon 5 of 5)	4816.0	NM_013487	12500.0	Mm.4527	NM_013487	ENSMUSG00000032094	Cd3d	T3d	CD3 antigen, delta polypeptide	protein-coding	5.5833148457448	5.98320383849726	5.92023962707226	5.83112825140457	5.45193529071325	5.27189083506492	5.71018863099538	5.78295993166221	-0.452687638080094	0.103753825785245	0.354031331043525
Merged-chr15-86140569-3	chr15	86140433	86140633	+	848.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145475, exon 13 of 13)	3' UTR (NM_145475, exon 13 of 13)	-45195.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	4.20161580866684	3.7437279937595	4.08055330810788	3.6933243835064	3.67186480111625	3.7435943578316	3.77940579121505	3.98974399693632	-0.392529664479214	0.409083734912405	0.704791463679563
Merged-chr15-64113352-4	chr15	64113256	64113456	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010026, intron 25 of 30)	intron (NM_010026, intron 25 of 30)	-52908.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	5.00190756228434	4.83706955005705	4.35287159055423	4.68853142199241	5.55088052364593	5.39338896410167	4.87224123534356	5.06585359260331	0.997327113123213	0.00571647403006976	0.0524653682636671
Merged-chr4-62481425-4	chr4	62481314	62481514	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138653, intron 1 of 6)	intron (NM_138653, intron 1 of 6)	1347.0	NM_138653	192120.0	Mm.29808	NM_138653	ENSMUSG00000028392	Bspry	-	B-box and SPRY domain containing	protein-coding	4.97310607022376	5.34411585674179	5.08155940948467	5.21484990190753	5.28234974846333	5.15046743728985	5.30427588758697	5.2087582500968	0.131919567082148	0.657473301497832	0.857331405988975
Merged-chr2-160220725-4	chr2	160220617	160220817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106777.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	5.15313031689667	5.32021190438696	5.69437861734521	5.46860455486133	4.97601533888491	4.58138760302231	5.06306057744241	4.86353787615743	-1.0110980971279	0.00225308650700893	0.0256390798532995
Merged-chr9-57769517-2	chr9	57769417	57769617	+	820.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3657.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	3.17605676645918	3.06093894933441	3.17649203230041	2.84218840770261	3.50646845981681	2.81647216426412	2.98596622288515	3.11740879007043	0.295541503192196	0.641180283656363	0.848625403955452
Merged-chr7-123370001-4	chr7	123369882	123370082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122643)	promoter-TSS (NM_001122643)	-67.0	NM_001316713	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	8.72876263441634	8.6203316136935	8.10078049632701	8.26160841362291	8.52646608830476	8.9124161988624	8.42315547616413	8.45688217636254	0.17969874777677	0.37617621708199	0.679007344082742
Merged-chr4-120032532-4	chr4	120032456	120032656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-128650.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	6.79935913077148	7.53082052993388	7.52012001734021	6.7723252978406	6.57281107780368	6.56084420560656	6.72236374033687	6.43428500184217	-0.877674635464428	0.000748739890558773	0.0106802718777721
Merged-chr11-94087015-4	chr11	94086961	94087161	+	844.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025428, intron 10 of 26)	B1_Mm|SINE|Alu	42856.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	3.73304700144103	3.67677696833449	3.8816479827625	2.98311953965764	3.88782578943009	3.90755176526104	3.71773001132039	3.78254666739926	0.64337417493112	0.248580660389417	0.55976334179148
Merged-chr7-75118266-4	chr7	75118172	75118372	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360573, intron 13 of 13)	intron (NM_001360573, intron 13 of 13)	88061.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	5.38244895176645	5.85068545491834	5.32767090413115	6.02850622244359	4.62645121487214	4.81613690325558	4.55830919827395	4.36140502602931	-2.12595788168673	4.86961220250421e-09	2.74220037153518e-07
Merged-chr5-143033084-3	chr5	143032987	143033187	+	590.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	72732.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	3.21414671643566	3.35061509622146	3.63063028046165	3.06317597940846	3.49173660682854	3.0532445350907	3.07608779580204	3.4375486165217	-0.144672621700901	0.807714195795507	0.92582798360164
Merged-chr2-84938704-4	chr2	84938573	84938773	+	815.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021398, intron 3 of 12)	intron (NM_021398, intron 3 of 12)	2027.0	NM_021398	58207.0	Mm.290729	NM_021398	ENSMUSG00000027074	Slc43a3	Eeg1|SEEEG-1	solute carrier family 43, member 3	protein-coding	3.44266808336892	3.37190996438218	3.18001617745967	3.0137752601455	4.07809384575807	3.88356679222291	3.64715390777813	3.55572159936156	1.8632062534081	0.000402989839379097	0.00647942484236837
Merged-chr12-33332220-4	chr12	33332098	33332298	+	940.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 2 of 7)	intron (NM_001033436, intron 2 of 7)	29683.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	4.76309337303378	4.62401227787942	4.68569256940349	5.10519139721799	4.66744886633394	4.49903164309966	4.94873004250739	5.03226998739814	-0.0499930792474524	0.892085601411669	0.9596010491436
Merged-chr11-114898247-4	chr11	114898130	114898330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170758, intron 4 of 6)	intron (NM_170758, intron 4 of 6)	8189.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	7.72406013740954	7.91731266645895	7.83534276281217	7.71079611052158	7.82194241307206	8.16814094039078	7.87024853102784	7.67837521660409	0.125712997766552	0.485091487368916	0.759081209563877
Merged-chr7-45523972-4	chr7	45523879	45524079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008654, exon 2 of 3)	exon (NM_008654, exon 2 of 3)	2289.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	5.58538009060519	5.37549884039193	5.71428107156602	5.46719959337584	5.78643969017289	5.46325988282156	5.84390378467527	5.82621867647033	0.354579666832794	0.18764033161818	0.486098819487933
Merged-chr6-32396002-2	chr6	32395902	32396102	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-115139.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	3.92771245475939	3.6377537374748	3.72408677628394	4.34850782165567	3.49418293283235	3.78652733249599	3.95699745616252	3.82800265565553	-0.521538968423875	0.308560655151179	0.620845739286685
Merged-chr19-29806600-4	chr19	29806502	29806702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172836)	promoter-TSS (NM_172836)	-593.0	NM_172836	240613.0	Mm.313351	NM_172836	ENSMUSG00000046138	9930021J03Rik	Gm9832|mKIAA2026	RIKEN cDNA 9930021J03 gene	protein-coding	8.13670834762888	8.41332285479956	7.95454468042793	8.2360454480809	8.57134824846327	8.34695358671978	8.28648249480564	8.1199518141816	0.18651423979688	0.30530693279127	0.617721494290786
Merged-chr5-99906353-4	chr5	99906250	99906450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	72588.0	NM_001077266	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	6.36666259362901	6.65821134772443	6.7228240507722	6.50711412831411	7.24837664284094	7.32870961374357	7.57060027985493	7.22173911577123	1.08106622670073	9.59200533608528e-08	4.1252912366838e-06
Merged-chr1-37000493-4	chr1	37000405	37000605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-60978.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	6.60574729754824	6.26586510415002	6.09326388784963	6.15227377375762	6.52330962406078	6.29205650698376	6.40296254510529	6.13188034171739	0.100569617257055	0.678934824527131	0.868233840147542
Merged-chr7-30535164-4	chr7	30535072	30535272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178252)	promoter-TSS (NM_178252)	-112.0	NM_001289682	233071.0	Mm.190704	NM_178252	ENSMUSG00000036882	Arhgap33	AW324378|NOMA-GAP|Snx26|TCGAP	Rho GTPase activating protein 33	protein-coding	7.17186855050847	7.53069841322633	7.27421263797354	7.30046297092889	7.26540460572067	7.6952783069846	7.50767974076389	7.10822040954861	0.109052633071785	0.597025916974956	0.825047231334778
Merged-chr14-73381833-4	chr14	73381707	73381907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	3482.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	7.09297684276057	6.72758484269952	7.37584837950533	7.70005891764279	7.08897295933541	6.46862316022759	6.87009108397332	6.91378294833532	-0.581051688565557	0.0285156171393513	0.162027070516635
Merged-chr1-88745431-4	chr1	88745335	88745535	+	782.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9455.0	NR_040493	78650.0	Mm.243767	NR_040493	ENSMUSG00000097398	Platr5	2410088K16Rik	pluripotency associated transcript 5	ncRNA	4.24525370668594	4.14158976663562	4.15872320227178	3.99807408076109	3.96741112446067	4.13914863272311	4.18422935548781	4.11028984068073	-0.0814364442021041	0.841948574423792	0.940020733877539
Merged-chr11-59809212-4	chr11	59809097	59809297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045686)	promoter-TSS (NR_045686)	404.0	NM_001271357	216805.0	Mm.339640	NM_146018	ENSMUSG00000032633	Flcn	AU014660|B430214A04Rik|Bhd|FLCL	folliculin	protein-coding	6.25377317853507	6.07349362379734	5.99359867398347	6.18542474276776	6.1729180237725	6.02920812480538	6.0067230027845	6.05456963185168	-0.0944546988707672	0.684249408877416	0.870666059001512
Merged-chr4-32251183-4	chr4	32251085	32251285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-166250.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	8.22157562328691	8.23814953730434	8.80090340911532	8.5433785693487	7.86673863129819	7.92359783432645	8.12445492432911	7.68792459944782	-0.72165484816521	0.000262615043249276	0.00454477903317291
Merged-chr1-80402141-4	chr1	80402028	80402228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43804.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	6.26495719955466	5.72001022211647	5.86208268947625	6.37329602475228	6.04197355970636	5.93713695649054	6.40284311348537	6.39912231185934	0.173402338194616	0.534756691445943	0.789386891898024
Merged-chr17-51178207-3	chr17	51178123	51178323	+	949.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 1 of 21)	intron (NM_028162, intron 1 of 21)	1129.0	NM_028162	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	3.47210138296668	3.73748048843109	3.47254371714498	3.65043212160621	3.67130442854538	3.64371414609441	3.4019633798065	3.41227151386731	-0.164765170383764	0.741499003709099	0.898231038394288
Merged-chr15-91172371-4	chr15	91172260	91172460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011994, intron 6 of 9)	intron (NM_011994, intron 6 of 9)	19647.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	6.45412183289117	6.47251106736024	6.7413674650695	7.05228041902335	6.29010931126301	5.98993141310104	5.88521678358102	6.41636118592073	-0.810398247220897	0.0020387196531269	0.0237269499983518
Merged-chr1-134556386-4	chr1	134556279	134556479	+	843.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3799.0	NM_152895	75605.0	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	3.61396252630834	3.5713324331406	3.32041780501591	3.70141833002566	3.7257126827665	3.67639352045236	3.54701452090326	3.66393458550986	0.272077749341469	0.578403269192887	0.814695658189852
Merged-chr7-16399638-2	chr7	16399542	16399742	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	CpG	-1554.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	6.16696165061177	6.44882386716614	6.5889615046276	5.97815504154911	6.17747085342469	6.09553289936912	6.69527744685455	6.56926934268355	0.149784317458501	0.577515801324322	0.814166268489505
Merged-chr5-31880619-4	chr5	31880531	31880731	+	972.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 6 of 11)	MTD|LTR|ERVL-MaLR	182581.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	4.60959203073969	4.94501836457679	4.65211840566143	4.63753347804307	4.76946542551617	5.04947945250253	4.78514811699933	4.97583963930173	0.368812558994251	0.27442574215671	0.586182213515363
Merged-chr18-69627805-4	chr18	69627715	69627915	+	918.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	281655.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	3.53125299447173	3.93629690518396	3.59584618394634	4.08227540703174	3.96899778807847	3.83519009752721	4.20973745170153	4.10647911942666	0.579455337097235	0.235496520237772	0.545490589918757
Merged-chr18-30507187-4	chr18	30507073	30507273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	234308.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	6.87234004588371	6.41479762928216	6.55938730833045	6.44612369313221	7.27687356479854	7.0631005268939	7.14141356777817	6.52028351450576	0.64658970691872	0.00758417817151073	0.0646817898478268
Merged-chr11-76579110-1	chr11	76579010	76579210	+	724.0	f0_balb.idr	Intergenic	Intergenic	-1371.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	3.22797973316421	2.90582840333062	3.12792373174834	3.2095438062248	2.42009617062066	2.56578705462497	2.75914556525123	2.8337430671286	-2.48627354464183	0.00136284625106381	0.0172947108761759
Merged-chr10-79908743-4	chr10	79908635	79908835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198107, intron 1 of 14)	CpG	203.0	NM_001163276	216154.0	Mm.260089	NM_198107	ENSMUSG00000013833	Med16	95kDa|A630083L04|DRIP92|Thrap5|Trap95	mediator complex subunit 16	protein-coding	7.23159803867411	7.26526271138138	7.53021291939436	6.74750863996667	7.03557609964886	7.35449145815789	7.23907506929228	7.22778828639142	0.00630445983519454	0.977910344018826	0.992113460332327
Merged-chr12-4476571-4	chr12	4476428	4476628	+	767.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010881, intron 1 of 22)	intron (NM_010881, intron 1 of 22)	654.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	4.60528428933545	4.08611632780538	4.42733771527505	4.03461569247902	4.32493404313947	4.1481169700327	4.10698861149319	3.96734889146004	-0.366399017091431	0.400186832654993	0.698107947002665
Merged-chr7-64392295-4	chr7	64392182	64392382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026483)	promoter-TSS (NM_026483)	-46.0	NM_026483	67973.0	Mm.26973	NM_026483	ENSMUSG00000030521	Mphosph10	2810453H10Rik|5730405D16Rik|AI326008	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding	7.58511148525674	7.90321935752746	7.7269406661668	7.85534378291847	8.07084440227012	8.06048657042797	8.21548274567927	7.91378024483985	0.374985084446188	0.0283794018628552	0.161473251952796
Merged-chr11-85521145-4	chr11	85521023	85521223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	167959.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	7.13516113306675	7.19126326060697	7.17959938293301	7.23529897735132	6.63657699356328	6.64996591393872	6.56136924939186	6.62368593886418	-0.799584261832746	2.43420068865226e-05	0.000605183272153611
Merged-chr17-88441547-4	chr17	88441435	88441635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355742, intron 1 of 5)	CpG	831.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	5.96939724869844	6.03532155370847	6.37119548751886	5.92677871963264	6.27384168637004	6.23834068649742	6.43695311006952	6.51212247036524	0.445534605146159	0.0616352018354935	0.262686787105478
Merged-chr10-118796100-4	chr10	118795980	118796180	+	871.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72823.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	3.42630164549649	4.07622198868479	3.89031658960311	4.01101395865756	3.6679437907112	3.85413210532425	4.01082567596266	3.88800861472025	-0.0708239095164779	0.884745082355063	0.956707485255618
Merged-chr10-39266766-4	chr10	39266676	39266876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102982.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	5.43777628846528	5.10930404291531	5.17414940315992	5.42224490300933	5.04082804221854	5.06159049839508	5.30138873496098	5.43489364359071	-0.158499112266651	0.605489808201733	0.828874510692961
Merged-chr17-86484491-4	chr17	86484394	86484594	+	860.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 6 of 14)	intron (NM_011104, intron 6 of 14)	-197316.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	3.89422668495016	3.98967703789511	3.41259862242767	4.25618178916516	4.00763229364639	3.90944169172111	4.106554493878	3.892535001599	0.121305925000962	0.809738988369171	0.926644407837403
Merged-chr9-61251888-4	chr9	61251796	61251996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41913.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	5.39002226114145	5.47012339937696	5.3617077607054	5.71802224993063	5.05982395642191	5.31331754327975	5.57479943791593	5.16707153150217	-0.396349951068163	0.191773432231697	0.491174881537907
Merged-chr6-38551333-4	chr6	38551225	38551425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138680)	promoter-TSS (NM_138680)	-9.0	NM_138680	192196.0	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	8.02029182262538	8.25612427005688	7.95042343343314	7.94617934514232	8.46917549437032	8.49394253293332	8.39665041702529	8.39006280043365	0.497882992090021	0.00183234880786962	0.0218540140407761
Merged-chr3-107330806-3	chr3	107330668	107330868	+	739.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001045807, exon 1 of 2)	exon (NM_001045807, exon 1 of 2)	2521.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	3.20414537271169	3.36351739388705	3.14570381663778	3.19008082305052	3.39611021215272	3.05843289673539	3.07397955763476	3.14416888508318	-0.161826908755679	0.773877213275962	0.91166330938482
Merged-chr18-33720386-2	chr18	33720302	33720502	+	936.416626	f0_c57.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-74490.0	NR_038152	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	3.05644821587925	3.11420065178735	3.05676610152587	2.60240372160144	4.51322895239717	4.12145208060527	4.44851848221908	4.02969328792924	5.2986864408051	4.34221221132406e-16	8.37599791300366e-14
Merged-chr2-145888576-4	chr2	145888475	145888675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028724)	TTS (NM_028724)	-14666.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	8.05251106840374	7.88362766621903	7.91048063448094	8.0954454995579	7.91829309540963	8.01341830062308	7.91497866329319	7.9822836922862	-0.0482681068476811	0.762949805946712	0.907015239695587
Merged-chr6-129623930-4	chr6	129623842	129624042	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286018)	promoter-TSS (NM_001286018)	-78.0	NM_001286018	27007.0	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	5.45261403350097	5.83157363564863	5.81111861173567	6.08091233745791	5.46880401423657	5.18335910943199	5.30349649843216	5.56251519386975	-0.742412582575854	0.0115784925555186	0.0876191283871212
Merged-chr9-65432434-4	chr9	65432320	65432520	+	752.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3362.0	NM_027134	69606.0	Mm.287956	NM_027134	ENSMUSG00000059183	Mtfmt	2310020P08Rik	mitochondrial methionyl-tRNA formyltransferase	protein-coding	3.3904232356967	3.78882094720972	3.04886610399145	3.56927643621243	3.81417860893468	3.50499443610003	3.59771990368693	3.50461937485474	0.425515051469825	0.453928280275503	0.73779282218003
Merged-chr19-45812302-4	chr19	45812174	45812374	+	818.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276358)	promoter-TSS (NM_001276358)	17.0	NM_001276358	80906.0	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	3.75207651069428	3.80502983793233	3.28708510094309	3.59330830444727	3.73539975300874	3.53441249662794	3.87380000302297	3.64876367856788	0.250281586692554	0.615764978237122	0.83467255086626
Merged-chr12-110770089-2	chr12	110769989	110770189	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347428, intron 1 of 2)	intron (NM_001347428, intron 1 of 2)	32157.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	3.13353251509101	3.0924917526775	3.25538772698603	3.42474905611347	3.12241083711654	3.42510913476341	3.40420994161135	3.25369539400133	0.21040924512093	0.705268142244021	0.881650206304768
Merged-chr2-25608436-4	chr2	25608299	25608499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024616)	promoter-TSS (NM_001024616)	47.0	NM_001024616	227624.0	Mm.29600	NM_001024616	ENSMUSG00000015087	Rabl6	B230208H17Rik|Rbel1|Rbel1a|Rbel1b|parf	RAB, member RAS oncogene family-like 6	protein-coding	5.67851646010924	5.81376787798891	5.5741234251491	5.39533678421219	5.75648088336914	5.66548865339518	5.57311558041922	5.88439359481884	0.19332108043869	0.475758829267174	0.75253417129796
Merged-chr4-150080490-4	chr4	150080402	150080602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7001.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	7.03364131324235	7.26195614670559	7.34493488630223	7.2573459825635	7.16854684680275	6.9172375532183	7.24829408301711	7.06703170724004	-0.165376815103534	0.387272877100966	0.688139428549813
Merged-chr9-41068081-4	chr9	41067983	41068183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	MLT1E3|LTR|ERVL-MaLR	11423.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	6.12249719358894	5.98491355261506	6.14257565675438	6.5137231577433	5.65936329224669	5.67197442405665	5.43241997348604	5.63571156117465	-0.993961575888877	0.00020652009777869	0.00373757794044989
Merged-chr11-116869857-4	chr11	116869777	116869977	+	966.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 10 of 12)	intron (NM_178620, intron 10 of 12)	15877.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	4.87956506340254	5.02444190176148	4.80223274176168	5.58062734809194	4.63962625042806	5.23034513839753	4.81905008433901	5.11804270989898	-0.320732003723579	0.400050230756291	0.698016583884129
Merged-chr7-45370246-2	chr7	45370146	45370346	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011698, intron 1 of 5)	CpG-13114	318.0	NM_011698	22342.0	Mm.20472	NM_011698	ENSMUSG00000003872	Lin7b	LIN-7B|MALS-2|Veli2	lin-7 homolog B (C. elegans)	protein-coding	3.55811266761111	3.74985573084132	3.86962368164019	3.38451573136097	3.55938255090468	3.89514554409434	3.48603853255369	3.95590263035395	0.278418183961721	0.582252552168741	0.816501953640427
Merged-chr6-119883340-3	chr6	119883240	119883440	+	945.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19358.0	NM_001166382	19365.0	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	3.18392251629957	3.2297869917042	3.50356142284871	3.59035966685676	3.20998059195612	3.16646598069425	3.11215488786801	2.9880919609319	-1.0338565045002	0.0741743902307939	0.293424904605638
Merged-chr11-97782459-4	chr11	97782364	97782564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028078)	promoter-TSS (NR_028078)	-25.0	NM_022891	65019.0	Mm.140380	NM_022891	ENSMUSG00000071415	Rpl23	2810009A01Rik	ribosomal protein L23	protein-coding	6.6818993254679	6.95434652772337	6.13405943810664	6.10104782109828	6.99446029315017	6.78324558368677	6.55694016568908	6.79170141306661	0.402907378302169	0.138199684444346	0.413600027627647
Merged-chr1-91065086-4	chr1	91064980	91065180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	11636.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	6.28924529098821	5.86817622781672	6.07932609856244	6.34548848160629	6.00192211670232	5.84266164177594	6.02730915604314	6.30336890061576	-0.176335381623384	0.490784070157511	0.762507515819213
Merged-chr13-101768794-2	chr13	101768694	101768894	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077495)	promoter-TSS (NM_001077495)	-577.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	5.03653694730742	5.11034066761157	5.17516426694471	5.44003495131398	5.44916373990943	5.0627517808741	5.4885332281855	5.23525960660867	0.197469630775356	0.526106990324557	0.783540883901652
Merged-chr8-73289865-4	chr8	73289764	73289964	+	900.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	63676.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	4.07705755876704	4.04894201193479	4.46568051861115	4.18388962614571	4.42341487823686	4.04014112558432	4.06067930508931	4.42509089826329	0.141941567870231	0.73422889146802	0.894922399154118
Merged-chr17-43072486-3	chr17	43072397	43072597	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	55942.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	5.19237829367917	5.4331068812695	5.37067752549244	5.410894592144	4.01247552529557	3.90316547538121	4.09311959781559	3.9804956107104	-3.205052535344	4.73886686803759e-14	6.60093551467804e-12
Merged-chr9-55938167-4	chr9	55938069	55938269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081341)	promoter-TSS (NM_001081341)	-50.0	NM_001081341	244891.0	Mm.86588	NM_175536	ENSMUSG00000034007	Scaper	C430017I08|D530014O03Rik|Zfp291	S phase cyclin A-associated protein in the ER	protein-coding	6.68101984334291	6.60556398984928	6.69740126047978	6.59158577620418	6.75835537723669	6.96113720904668	6.81873360352824	7.01103541823183	0.349053452472293	0.0785389532235755	0.303250441707962
Merged-chr10-20595622-3	chr10	20595478	20595678	+	903.0277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	MER102b|DNA|hAT-Charlie	-47250.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	3.3962195911514	3.16780567155804	3.24457419974093	3.04642380344932	2.85725653669376	2.98124204926157	2.93315810172743	3.18770476289391	-0.913448208338286	0.127523657062339	0.397369460390093
Merged-chr4-46039235-4	chr4	46039129	46039329	+	966.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021883)	promoter-TSS (NM_021883)	7.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	5.33809462919981	5.49769938211707	5.33901177744785	5.786605464001	5.23399456269387	5.13449581090385	5.82446795068912	5.02862529851083	-0.30317676418991	0.363513093127249	0.668574361907056
Merged-chr7-98307470-3	chr7	98307353	98307553	+	930.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360615, intron 1 of 10)	intron (NM_001360615, intron 1 of 10)	2089.0	NM_001360616	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	3.61680631390152	3.48019101443152	3.71483705809573	3.9109742735317	3.52395689258909	3.31407707630826	3.26034227841858	3.4536205820312	-1.00323442669172	0.0572270422541294	0.250714817542111
Merged-chr13-35512154-2	chr13	35512054	35512254	+	793.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_C_Mam|LINE|RTE-X	-147708.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	2.54028202183	2.34391328550815	2.54055456122387	2.45177733244969	2.69795016929755	2.71366744914401	2.77830019989944	2.73044632492947	1.34783742198337	0.0412684706730567	0.205559725265046
Merged-chr2-132570987-3	chr2	132570889	132571089	+	745.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355651, intron 2 of 19)	B2_Mm2|SINE|B2	7259.0	NM_001291050	74182.0	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	3.21380845671443	3.29754618361547	3.40886990424236	3.80043386286	3.93334286222811	3.58314359487613	3.45506436977754	3.72633893949333	0.697280238578814	0.216645012071192	0.523299012970522
Merged-chr5-120102949-4	chr5	120102849	120103049	+	825.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13564.0	NM_028762	74111.0	Mm.41022	NM_028762	ENSMUSG00000029594	Rbm19	1200009A02Rik|AV302714|NPO	RNA binding motif protein 19	protein-coding	4.4074573370076	4.43728614138097	4.00528858309799	3.99067767289461	4.20048614938372	4.27991143331278	4.03988992183017	4.10391206448764	-0.14775024628064	0.727049153689499	0.89133085313418
Merged-chr16-5013591-4	chr16	5013480	5013680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133185)	promoter-TSS (NM_133185)	-27.0	NM_133185	66049.0	Mm.27792	NM_133185	ENSMUSG00000022540	Rogdi	0610011C19Rik|AU020118|C76152|Lzf	rogdi homolog	protein-coding	8.30039685920596	8.54998197169461	8.13845992843205	8.44330727298048	8.46404589468562	8.62398309198208	8.4850516092433	8.22637591209052	0.107871486176667	0.532431628067875	0.788161360416007
Merged-chr6-3344515-4	chr6	3344419	3344619	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55052.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	5.57898180248436	5.4926865368978	5.48462100921201	4.46729913251009	5.25263029744038	4.95434162287978	5.0193209865556	4.72512776081498	-0.584978957165742	0.146890282981339	0.427572829088733
Merged-chr4-136142297-4	chr4	136142219	136142419	+	918.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-1503.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	4.47693078894669	4.54099253158282	4.00927781268301	4.58513761422097	4.38572644794651	4.2426393265955	4.29110385851689	4.35136325846457	-0.265732763818176	0.507301889893332	0.772710503440438
Merged-chr5-102037705-4	chr5	102037580	102037780	+	960.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	32241.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	4.26127636367717	3.99705194986178	4.52858774352557	5.31956460927769	4.07950781033721	4.05654089452126	4.72572095466825	4.56508786320121	-0.549347206620284	0.290167449812	0.602328052206718
Merged-chr3-95450651-2	chr3	95450551	95450751	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037737, intron 2 of 21)	intron (NM_001037737, intron 2 of 21)	16261.0	NM_001037737	11863.0	Mm.250265	NM_009709	ENSMUSG00000015522	Arnt	D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051	aryl hydrocarbon receptor nuclear translocator	protein-coding	2.95715439930611	2.91192016750138	2.95752431739362	2.8006971201182	2.75023646175742	3.24474142884628	3.063900348332	2.95602821313021	0.457348396715732	0.450442795518609	0.735338736614162
Merged-chr8-56305395-4	chr8	56305315	56305515	+	918.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 3 of 6)	Lx7|LINE|L1	10863.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	4.7739660901387	4.42479549364527	4.40201339027539	5.10284988955525	4.99723398218722	4.83506457335451	4.38295395709948	4.49178012026866	-0.0373458087406834	0.9283765572169	0.973969592850704
Merged-chr9-40760554-4	chr9	40760490	40760690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-40683.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	7.15006974534272	6.97599330850407	7.00431489039831	6.99450537718026	5.73488390110274	5.61732651918423	6.04183253640371	6.13675510787942	-1.68442510089189	4.99911593129335e-13	5.67515267740876e-11
Merged-chr8-72583257-3	chr8	72583162	72583362	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357280, intron 4 of 4)	ORR1D2|LTR|ERVL-MaLR	11439.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	4.31416043951954	3.94264080826975	4.18270260433701	4.09966879958855	6.16363175722386	6.49626378903125	6.32822886228142	6.39962008631586	4.1062489285108	2.01239304177062e-26	1.49208462833532e-23
Merged-chr12-34701664-4	chr12	34701576	34701776	+	879.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-172787.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	4.58512245138486	4.35166692813146	4.42858557234598	4.46968723540969	4.70618966136984	4.16611861585007	4.13221617358086	4.46691043361506	-0.127211270938294	0.750983201609831	0.901928782667397
Merged-chr10-45276619-4	chr10	45276478	45276678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12727.0	NM_024286	78977.0	Mm.24748	NM_024286	ENSMUSG00000019848	Popdc3	AA682104|Pop3	popeye domain containing 3	protein-coding	5.24949847542138	5.95621556117443	5.59952567443708	5.59373439951569	5.44242017461805	5.3255631989531	5.66826047862652	5.02924620435439	-0.410107407851338	0.195040388454161	0.495781550312065
Merged-chr12-12294545-4	chr12	12294438	12294638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	32399.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	6.43003388051935	6.46081469129633	6.22192942236791	6.38683575306073	6.50066176048035	6.47923706171453	6.79792839378608	6.6795478902406	0.347604781460544	0.107642033293819	0.361784077731473
Merged-chr3-152346464-4	chr3	152346350	152346550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252486)	promoter-TSS (NM_001252486)	-28.0	NM_133247	170822.0	Mm.258320	NM_133247	ENSMUSG00000025437	Usp33	9830169D19Rik|AA409780|Vdu1	ubiquitin specific peptidase 33	protein-coding	7.79137262495458	7.92559185187077	7.617152249774	8.13363162025152	7.91775303511491	7.93856169395223	7.87349869903295	7.63856063217762	-0.0567551547504293	0.763193551401092	0.907127891712087
Merged-chr9-105764852-3	chr9	105764771	105764971	+	848.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102607, intron 10 of 36)	intron (NM_001102607, intron 10 of 36)	44777.0	NM_172927	245026.0	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	4.05418991130971	4.2856695401528	4.59889083066073	4.08479185926767	2.88924836669551	3.14630854781301	3.09967702285338	3.18835586590622	-6.34132277767961	3.46643412175903e-09	2.0108990574791e-07
Merged-chr12-78923959-3	chr12	78923864	78924064	+	809.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17026.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	3.84237903631038	4.0788229709832	3.79107519699861	3.870678837646	3.54125124615329	3.96381323516801	3.8270112905234	3.93836926478957	-0.236009983058288	0.608517439900484	0.830675049522223
Merged-chr13-59508751-2	chr13	59508643	59508843	+	599.0	f0_balb.idr|f1_balb.idr	intron (NM_001048008, intron 11 of 17)	intron (NM_001048008, intron 11 of 17)	35708.0	NM_001284221	67269.0	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	3.24576334779878	3.681328387239	3.11917276130715	3.3879945772334	3.26710959748246	3.29517156474154	3.40234983685994	3.24456154936434	-0.27546478612782	0.617578128505259	0.835629844601338
Merged-chr4-120914719-4	chr4	120914617	120914817	+	952.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10288.0	NM_028457	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	5.02032463057084	4.95973868688942	4.7749836989177	4.95053802459424	4.73139741375516	4.78680907236448	5.05824111927826	4.77188389496471	-0.186292938763404	0.569030177728007	0.809191633255217
Merged-chr5-28243242-4	chr5	28243145	28243345	+	822.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310512, intron 1 of 3)	intron (NM_001310512, intron 1 of 3)	2543.0	NM_001310512	269637.0	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	4.11949505134909	4.22949208121428	4.25824250468339	4.49899302120398	3.9885983769408	4.24556966061726	4.50975356906284	3.78896187554938	-0.337817390601815	0.446875688528497	0.732569429612388
Merged-chr7-19359575-4	chr7	19359452	19359652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145822)	promoter-TSS (NM_145822)	-69.0	NM_145822	70333.0	Mm.171370	NM_145822	ENSMUSG00000047649	Cd3eap	1190028F09|2610103M17Rik|ASE-1|Ase1|CAST|PAF49	CD3E antigen, epsilon polypeptide associated protein	protein-coding	5.77916542108678	5.99201457321203	6.19131094171214	5.61113649791185	5.66105860533455	5.90638889898108	5.29032109197557	5.89208608779814	-0.316068814123161	0.28339979131386	0.595486752647358
Merged-chr5-107754905-4	chr5	107754795	107754995	+	985.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 17 of 17)	intron (NM_007964, intron 17 of 17)	-29090.0	NM_001267621	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	5.83298410409217	6.40122942303065	6.25030024221423	5.45107668084374	5.7617856616449	5.80837270998056	5.39452094861508	5.54110317716001	-0.630151524410981	0.0504893791675231	0.233108364151967
Merged-chr15-76770600-6	chr15	76770510	76770710	+	996.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	Lx7|LINE|L1	-46765.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	4.68756624963863	4.85192939232895	4.64868202832297	4.83075857022881	4.63499059330317	4.89871314979114	4.58679324462974	4.64568863648848	-0.155404734165239	0.648903388375359	0.852475708788533
Merged-chr2-50690294-4	chr2	50690183	50690383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-219401.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	6.81500536758696	6.35214393803261	6.60896916148287	6.40076219804116	6.24632352181529	6.5184720240313	6.43268897659587	6.17922502342506	-0.295611139433618	0.206695705220831	0.510687410250739
Merged-chr15-72810840-4	chr15	72810735	72810935	+	937.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002864)	promoter-TSS (NR_002864)	-511.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	4.39655101847217	4.53529991527491	4.5250961156697	4.23641865328087	4.28303231826355	4.84472503831246	4.42123736296547	4.80920504449129	0.420270997101426	0.282149470693972	0.594298143832339
Merged-chr4-151861978-4	chr4	151861875	151862075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195565)	promoter-TSS (NM_001195565)	-207.0	NM_001195565	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	9.401046523821	9.49572340461657	9.43209014993197	9.43336165378999	9.43357460666064	9.6953936590917	9.50351621429232	9.41305821413787	0.0899933331533384	0.51888748119934	0.779755352452979
Merged-chr14-20348133-4	chr14	20348006	20348206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360365)	promoter-TSS (NM_001360365)	15.0	NM_027475	70601.0	Mm.35105	NM_027475	ENSMUSG00000021810	Ecd	5730461K03Rik|Hsgt1	ecdysoneless cell cycle regulator	protein-coding	7.43525669461255	7.69056793085532	7.29533620847307	7.19027362076428	7.21615893064221	7.57446003694034	7.22691458967071	7.53202725764665	-0.0258453760185156	0.900466610852131	0.963143536054876
Merged-chr13-59769874-4	chr13	59769770	59769970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015349)	promoter-TSS (NR_015349)	-81.0	NM_026921	69046.0	Mm.7884	NM_026921	ENSMUSG00000044792	Isca1	1810010A06Rik|Hbld2	iron-sulfur cluster assembly 1	protein-coding	8.63494786605752	8.70282549625183	8.49896652945616	8.55843320709842	8.68710211495552	8.82319827731746	8.72836716748462	8.39998565305725	0.0855681791255787	0.594221021098941	0.823393125307614
Merged-chr7-109618900-2	chr7	109618800	109619000	+	690.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1753.0	NM_029811	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	3.01397843156504	3.19076401765006	3.14327760319412	2.88706487422914	3.44957314683666	3.31603322214378	3.30212309481986	3.25896748876794	1.09151851522759	0.0464884442077731	0.221560301398719
Merged-chr1-134302929-4	chr1	134302823	134303023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001144855, intron 25 of 28)	intron (NM_001144855, intron 25 of 28)	12919.0	NM_031189	17928.0	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	6.51706400649313	6.66218099590766	6.59751115603571	6.60321505129245	6.30847977119524	6.36061393310131	6.41799388807772	6.54586266737365	-0.28001898693307	0.181525539559593	0.478229564746179
Merged-chr11-103223600-4	chr11	103223496	103223696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 14 of 15)	intron (NM_016896, intron 14 of 15)	-5164.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	6.06483673442873	6.25457208864568	5.92704841732232	6.40417149369739	5.98320885126862	6.34711550282314	6.29055081110874	6.59034060820587	0.183160059369558	0.480138268100346	0.755678709554239
Merged-chr17-67342281-4	chr17	67342234	67342434	+	876.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	RMER15|LTR|ERVL	12125.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	3.62207412681353	4.11994137232957	3.56324310161319	3.71994531829433	3.67660365195205	4.09921619387966	3.55034898807469	3.83393547489696	0.0728367195205548	0.884059065674122	0.956390337098447
Merged-chr1-149842032-4	chr1	149841934	149842134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 16 of 17)	intron (NM_008869, intron 16 of 17)	80405.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	6.82787406948904	6.95304555931577	6.3342827999643	6.57836783401894	6.90603559965385	6.78293731341064	6.98307951118912	6.82422328784017	0.262304115751597	0.236233748696893	0.546239222898876
Merged-chr8-124231303-4	chr8	124231209	124231409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139272)	promoter-TSS (NM_139272)	-85.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	6.17776258340396	5.7330269782489	5.85958164042222	5.67605684710331	6.27915918430222	6.01220003880131	6.43001623562896	5.75478164573677	0.449298584371173	0.103834147319493	0.354152607794058
Merged-chr1-128608294-3	chr1	128608195	128608395	+	933.8777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15996.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	4.81527417538131	4.25654424647065	4.14776119482397	4.67578676743141	4.09243828192855	3.94000683828515	4.02954337321468	4.04385216418904	-1.19006429288847	0.0062407425092414	0.0558684204584698
Merged-chr9-120927414-4	chr9	120927321	120927521	+	972.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040753, intron 2 of 2)	intron (NR_040753, intron 2 of 2)	3381.0	NR_040753	78060.0	Mm.463884	NR_040753	ENSMUSG00000086365	4930593C16Rik	-	RIKEN cDNA 4930593C16 gene	ncRNA	5.19443003299818	5.77026663457659	5.22774522950571	4.89550310949302	5.46890716281336	5.40317826842154	5.40676953485764	4.97821814907075	0.0464693597274298	0.893539942988694	0.960259496156144
Merged-chr9-121317136-4	chr9	121317072	121317272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	19670.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	6.34633700339358	6.42417599246565	6.78246402320323	6.49037479824652	6.46016594654327	6.30302530799464	6.29639036528042	6.57909138572946	-0.147559465177595	0.513267998080594	0.776401540998876
Merged-chr10-99428526-4	chr10	99428402	99428602	+	758.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	165271.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	3.67406671972099	3.80177448597037	3.51703474791598	3.18268799364135	3.58481821589724	3.45250566687906	3.50327213482361	3.62208453970176	-0.0377903578111509	0.943079047813474	0.97939909270739
Merged-chr14-64867051-3	chr14	64866945	64867145	+	918.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 4 of 9)	intron (NM_177338, intron 4 of 9)	82812.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	3.69609908478095	3.31488175605777	3.64693211451109	3.6524304960829	3.63258118934707	3.54037978752689	3.52762146129105	3.59318525265721	-0.0365923195647399	0.940675205023245	0.978654793543509
Merged-chr15-98807951-4	chr15	98807783	98807983	+	950.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013741)	promoter-TSS (NM_001013741)	42.0	NM_001013741	13199.0	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	4.04215956953317	4.07381952528371	4.37715409298817	4.39857438291887	4.38889724707418	4.32345129518807	4.3148688056622	4.70493401660989	0.466528907711102	0.246727218619351	0.557995637343335
Merged-chr17-17549128-4	chr17	17549013	17549213	+	840.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 11 of 17)	intron (NM_172827, intron 11 of 17)	75376.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	3.92832892006447	4.03428364584266	3.81963299479784	4.2288518363195	4.48845860825728	3.99672715252811	4.19114205151152	3.81761496936807	0.347878809420128	0.451281815795866	0.735881196852671
Merged-chr10-61204177-4	chr10	61204074	61204274	+	857.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081127, intron 18 of 21)	intron (NM_001081127, intron 18 of 21)	28912.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	4.55221533690679	4.75092079311844	4.82156195111615	3.74670286661202	5.18972552122608	4.68775809885065	4.57326472164909	4.71005069776438	0.608195853314125	0.180668190347237	0.47704412057244
Merged-chr7-75704635-4	chr7	75704527	75704727	+	926.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 17 of 36)	intron (NM_029332, intron 17 of 36)	-143711.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	4.95680442587146	4.73714843193479	4.99079672592462	5.07246129545392	4.82713950373189	4.83133280303823	4.93371165346375	4.7348336387474	-0.242824408900403	0.457089775316124	0.740344812206489
Merged-chr9-123853045-4	chr9	123852943	123853143	+	996.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011798, exon 2 of 2)	3' UTR (NM_011798, exon 2 of 2)	-1144.0	NM_001110253	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	4.36031021698127	4.90563282310855	5.39649957518595	4.42108171938571	5.32803069358017	5.04688089702967	4.98927148455276	5.49001325119755	0.761942283585279	0.0587552742215886	0.255164225980382
Merged-chr8-69189665-4	chr8	69189577	69189777	+	886.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19369.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	4.34456548555383	4.34685108300277	4.54658258833356	4.18122886484359	4.06497788729052	4.33458563276797	4.36810401550734	4.58017089865595	-0.0198600378692282	0.960431834736833	0.985883800393479
Merged-chr16-30067023-4	chr16	30066944	30067144	+	980.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008235, exon 4 of 4)	exon (NM_008235, exon 4 of 4)	1687.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	4.79163422229364	5.55760474174961	5.34007535323192	5.40940430319066	5.40884205209374	5.01387196406439	4.72751111688626	4.98641743772387	-0.446031429629589	0.214684579196254	0.520613030206125
Merged-chr12-85648177-4	chr12	85648093	85648293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-38527.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	7.2404026647908	7.12430227775021	6.9526557332909	6.88757428077308	6.77764484932255	6.93362374386275	7.10922919763924	7.04761983443571	-0.115103935818257	0.57180808868964	0.810819928378984
Merged-chr11-69995618-4	chr11	69995522	69995722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291125)	promoter-TSS (NM_001291125)	-144.0	NM_001291125	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	8.06060611618188	8.36004760933567	7.94988003226193	7.94783208033089	8.44545245792547	8.62322372676154	8.18030194582289	8.33721974342495	0.403625549716073	0.0270722535603647	0.15651201560861
Merged-chr5-123049392-4	chr5	123049254	123049454	+	870.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2338.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	3.86501127907469	3.29878171794082	3.58095549707769	3.53444482792512	3.56580274449928	3.46266294441397	3.66743583467205	3.46809218986907	-0.112053598862897	0.825933345295392	0.933190575949898
Merged-chr13-110747625-3	chr13	110747529	110747729	+	907.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-155870.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	4.296144147164	4.07063253191686	3.96590889721882	4.21315446532845	3.56086560604534	3.76477014720302	3.6321385582534	3.64356787208834	-1.47462522738323	0.00146243262389468	0.0182814351486125
Merged-chr9-63124329-4	chr9	63124235	63124435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22645.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	6.63409668471057	6.86031560909467	6.55427016366585	6.5573759652904	6.76961279012949	6.85773754423205	6.67719441584204	6.80585816795946	0.176637456283737	0.388658615900663	0.689050386119166
Merged-chr1-134048943-2	chr1	134048843	134049043	+	853.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021355)	TTS (NM_021355)	11689.0	NM_021355	14264.0	Mm.287146	NM_021355	ENSMUSG00000041559	Fmod	AI131919|AU041740|FM|SLRR2E	fibromodulin	protein-coding	3.59246625986126	3.51898770006489	3.64923202283916	3.81908529609612	3.70514422663525	3.87417021698748	3.96804706479711	3.7011286835061	0.449167932639065	0.340773763123007	0.649892443944284
Merged-chr17-17448000-3	chr17	17447908	17448108	+	796.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025681, intron 4 of 5)	MIR|SINE|MIR	45322.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	3.71618863452162	3.56399337832819	3.3509593411745	3.4991585285676	3.33121513327394	3.4016983770375	3.50657730696457	3.40827760887801	-0.430236900751441	0.396759337068919	0.695372415340369
Merged-chr13-9454540-4	chr13	9454445	9454645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	178020.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	6.03313712243793	6.30792010755364	6.2991524209348	6.40792173852205	6.61060444976791	6.11856354880714	6.40523287875732	5.96008580046329	0.0508411763600088	0.842611251258265	0.940251336238462
Merged-chr19-57590998-4	chr19	57590904	57591104	+	914.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20030.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	4.75687068199846	5.12666778432701	4.64154012198873	4.93887876324497	4.45522365402402	4.85489722732163	4.44875290598466	4.46570451533809	-0.693899115382151	0.0571874161151542	0.250649205151512
Merged-chr14-48130983-1	chr14	48130883	48131083	+	699.0	f0_balb.idr	intron (NM_033602, intron 1 of 5)	intron (NM_033602, intron 1 of 5)	10114.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	3.12003178226935	2.89868298157197	3.06953690750536	2.99761891534047	2.47069907746351	2.50970393599041	2.70321393516868	2.71043230671251	-2.26433434239406	0.0020876924869012	0.0241625794349822
Merged-chr17-46341438-4	chr17	46341339	46341539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-13416.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	7.46787927189945	7.51877374593319	7.63812278433968	7.86751790003029	7.36072321299367	7.33523722833947	7.42270764976604	7.55572571457783	-0.296768235488781	0.112383463729712	0.370614462788045
Merged-chr12-103341834-4	chr12	103341730	103341930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	14171.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	5.21910325958023	4.80384212504537	5.02789310164668	5.1142159002197	5.28893477280788	4.89661884229481	5.22321635159831	5.12408085705389	0.186519184267859	0.555257617736714	0.801400774030894
Merged-chr10-127323639-4	chr10	127323520	127323720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359656)	promoter-TSS (NM_001359656)	-87.0	NM_146011	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	6.18986379482363	5.86198749686523	6.02919554044183	6.01810625086924	6.08352687514768	6.30652456442163	6.10141069478982	6.00316298030551	0.154131053113482	0.516119544787794	0.778006346996534
Merged-chr11-54954273-4	chr11	54954165	54954365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271456, intron 1 of 18)	intron (NM_001271456, intron 1 of 18)	8675.0	NM_021327	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	5.60085835833437	6.52722743933728	5.73415900515236	5.16452547379501	6.03431265654011	6.21923703021589	5.70462717577625	4.92192443762094	-0.0972404801642887	0.879129503470376	0.954746715269166
Merged-chr8-72272610-4	chr8	72272509	72272709	+	997.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32591.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	5.82723769177696	5.53035607079404	5.98972726921521	6.00010281043103	5.23322715540229	5.26988206974747	5.10093788086981	5.22962639793987	-1.12153560771968	9.29041753534298e-05	0.00191058531174642
Merged-chr15-86170401-4	chr15	86170308	86170508	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-15320.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	4.85553236801401	4.85820440485825	5.20901216961822	4.50767602085372	4.77398126693184	5.03075586141859	4.79594263484057	5.11865490389744	0.139430211468778	0.697673954368727	0.877985438694712
Merged-chr4-63556923-4	chr4	63556827	63557027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1836.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	5.86071822941074	5.68502409990999	5.44592306046811	6.10269838627429	5.67996229241115	5.79365023908456	5.5899293429761	5.50212289276171	-0.2815832965374	0.324361828123545	0.636001946366963
Merged-chr3-84922015-6	chr3	84921928	84922128	+	883.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177774, intron 3 of 12)	intron (NM_001177774, intron 3 of 12)	-30183.0	NM_080428	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	3.53429172202153	3.4566818817779	3.73828300522241	3.72025517570597	3.48711026575443	3.40594601103633	3.40741347391797	3.78205095102243	-0.299126563141291	0.552891714952529	0.799910694601541
Merged-chr15-100150749-4	chr15	100150642	100150842	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 1 of 3)	intron (NR_037311, intron 1 of 3)	-3654.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	5.05466792824017	4.96616231848648	4.68636043531688	5.2074322858544	5.1564339237233	4.47971691165722	4.99858340657233	5.01964205505634	-0.110816481005206	0.757381767617827	0.904677695365828
Merged-chr12-69583092-4	chr12	69582985	69583185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033236)	promoter-TSS (NM_001033236)	-57.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	7.17016875806042	7.33622197883115	6.95110086377862	7.24171960450523	6.65047395996795	6.22950231911338	6.7542898131727	6.64710720653001	-0.83580756300951	0.000114502100356923	0.00227188263260083
Merged-chr1-71938724-4	chr1	71938632	71938832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50620.0	NR_027658	667931.0	Mm.214128	NR_027658	ENSMUSG00000099707	Gm8883	EG667931|Gm554	predicted gene 8883	ncRNA	5.54191139267413	5.37675777095117	6.18196096803462	6.28042219561565	4.88556880974921	5.08137685689449	5.11004699552762	5.30377438102721	-1.42452174405666	3.38698621161487e-05	0.000805218074671124
Merged-chr5-72263846-4	chr5	72263737	72263937	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 11 of 22)	intron (NR_003966, intron 11 of 22)	60494.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	5.44392295633176	5.24163532970113	5.14063410265164	5.29979469904726	5.52607978556909	5.31674197574799	5.4700736135509	5.10237164515156	0.154874080041791	0.598081208581483	0.825700950899405
Merged-chr1-16659626-4	chr1	16659532	16659732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037998, exon 1 of 4)	non-coding (NR_037998, exon 1 of 4)	2080.0	NR_037998	329101.0	Mm.406049	NR_037998	ENSMUSG00000097744	D030040B21Rik	D030040B21	RIKEN cDNA D030040B21 gene	ncRNA	5.58452076318954	6.13428230313298	6.07408407326368	5.93828184324	6.12242449081409	6.16512095979527	5.93797171257509	5.82458760881062	0.111536369171487	0.6667795874857	0.862118979153907
Merged-chr14-48465142-3	chr14	48465046	48465246	+	721.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310584, intron 4 of 16)	intron (NM_001310584, intron 4 of 16)	18794.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	3.07364414997002	3.12305171553236	3.13342044910863	3.21644173453276	2.86347758208319	3.12056921653128	3.23129032870173	3.0725034251907	-0.279302412744953	0.62761117999413	0.841247952058539
Merged-chr14-69136044-4	chr14	69135937	69136137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35765.0	NM_010920	18092.0	Mm.390691	NM_010920	ENSMUSG00000044186	Nkx2-6	AV044928|Nkx-2.6|Nkx2.6|Tix|tinman	NK2 homeobox 6	protein-coding	5.77602169660243	6.20641966199218	5.80195811881705	5.54990763225622	5.96780740901209	6.04924239633252	5.99654608198829	5.89282560067405	0.210679210318357	0.434161860584171	0.72350823108938
Merged-chr8-111626097-4	chr8	111625978	111626178	+	734.845825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001168623)	TTS (NM_001168623)	4244.0	NM_027570	52815.0	Mm.27589	NM_027570	ENSMUSG00000031958	Ldhd	4733401P21Rik|D8Bwg1320e	lactate dehydrogenase D	protein-coding	3.96303365855847	3.94051726324802	3.96359578678504	4.12960785942466	4.06956796403731	4.13511548332067	3.9473428735015	4.14727646908179	0.169367762719964	0.684191972720716	0.870646873868743
Merged-chr11-34010391-4	chr11	34010296	34010496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-17203.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	6.68023628731506	6.91771960257068	6.57049627484912	6.24501077642857	6.94030531736092	7.16474759371759	6.82964179894039	6.36924871842107	0.341743446270631	0.187408022546031	0.48581943275529
Merged-chr19-46979661-6	chr19	46979507	46979707	+	963.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164363, intron 1 of 17)	intron (NM_001164363, intron 1 of 17)	-10040.0	NM_001164365	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	4.49310968739269	4.10908780857144	4.37009681426828	4.68506696650583	4.29062177894572	4.31047485387895	4.30694469079665	4.52954533840686	-0.199308452158796	0.618472296459796	0.836000920352511
Merged-chr13-107449911-3	chr13	107449798	107449998	+	904.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19924.0	NR_045083	105120.0	Mm.417700	NR_045083	ENSMUSG00000114780	AI197445	-	expressed sequence AI197445	ncRNA	3.80669578767631	3.84762538327761	3.75917170174072	3.59298541967468	3.76633659695274	3.7203409796475	3.58894482010929	3.2199547648069	-0.475549803022581	0.35434627732316	0.66105817669406
Merged-chr14-95154832-2	chr14	95154732	95154932	+	584.166626	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-726422.0	NM_001358241	66732.0	Mm.75060	NM_025733	ENSMUSG00000034689	4921530L21Rik	-	RIKEN cDNA 4921530L21 gene	protein-coding	2.7026860672315	2.5586315350557	2.70294831228059	2.37384559852544	3.3952684562745	3.3639690708093	3.22775412118055	3.74231342424576	4.35155913089671	1.4650570655691e-09	9.13946510693631e-08
Merged-chr12-56405036-4	chr12	56404944	56405144	+	874.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59150.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	4.3659818652109	3.94317239696621	3.94965223661659	4.13075348996862	4.26383479285029	4.07286600353572	4.30656564132587	4.40267781500167	0.399505627362351	0.330683418507342	0.642019394630246
Merged-chr10-7207590-4	chr10	7207483	7207683	+	961.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172546, intron 1 of 12)	intron (NM_172546, intron 1 of 12)	4654.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	4.68631225761486	4.75268164307241	4.54151810790573	5.13931152637587	5.43723093043752	5.25870212382461	5.6632990969332	5.55610084772625	1.21495446147989	0.000473104713844573	0.00738909098624547
Merged-chr17-67340513-4	chr17	67340426	67340626	+	949.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	ID_B1|SINE|B4	13933.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	5.14771913088095	5.0212531517933	5.17870766115805	5.15591759202942	4.84488853963082	4.85324293728313	4.69584319751717	5.14503991316338	-0.459852038336868	0.149978362002013	0.432360854406563
Merged-chr5-64379143-4	chr5	64379037	64379237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88805.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	8.15760974341008	8.36185025779447	8.17121181521638	8.22056932997609	8.28535110070585	8.19290506211828	8.12036908895967	8.18399109779788	-0.0409032617469229	0.791327268759473	0.919050824109746
Merged-chr8-13104903-4	chr8	13104817	13105017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146207)	promoter-TSS (NM_146207)	426.0	NM_178708	234069.0	Mm.103427	NM_178708	ENSMUSG00000038542	Pcid2	A730042J05Rik	PCI domain containing 2	protein-coding	6.1003965613374	6.10192858255125	5.91647801260885	6.24292519460471	6.45439641751204	6.49378725779908	6.42265095656405	6.43476198623699	0.511433130798201	0.0224941886786295	0.138580663670527
Merged-chr8-81015007-4	chr8	81014908	81015108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027554)	promoter-TSS (NM_027554)	-102.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	8.61127868863702	8.77694815842842	8.71705770882266	8.3097331341801	8.61050989164633	8.75838719785894	8.45447353984546	8.40569005290286	-0.057309214297091	0.746180213436808	0.899968661443807
Merged-chr16-70329257-4	chr16	70329166	70329366	+	915.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 1 of 15)	intron (NM_028803, intron 1 of 15)	15317.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	4.06949919533437	4.15216316501055	4.01133082747203	4.28366863802228	4.62622911393829	5.00509754113072	4.90317137405927	4.76668899967282	1.50990819031348	0.000101828425351141	0.00206144638454745
Merged-chr1-152599513-4	chr1	152599436	152599636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	25681.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	7.37289800164636	7.34011067095444	7.72717812601049	7.58025256089673	6.48326036981346	6.76049473030675	6.78807705440353	6.66168689174445	-1.16590286295138	9.04777535152067e-09	4.8349219350292e-07
Merged-chr1-72225996-4	chr1	72225914	72226114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-13700.0	NM_001357488	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	5.85497940869966	5.80842000905295	6.11619851300594	5.86130964043003	5.99337000165338	5.85299577918605	6.1962075341386	6.15025193737003	0.230280665469415	0.348107665393397	0.655950834707556
Merged-chr14-64633590-4	chr14	64633490	64633690	+	933.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18941.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	4.42293718321507	4.15674849827552	3.73739398884086	4.13115764637937	4.60110051216943	4.55450054950416	4.36163288382447	4.71298898161946	1.01079438290118	0.0139813584555728	0.0999136037562441
Merged-chr4-141681981-4	chr4	141681884	141682084	+	978.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3732.0	NM_023544	69994.0	Mm.441022	NM_023544	ENSMUSG00000040715	Rsc1a1	1700027M01Rik|Rs1	regulatory solute carrier protein, family 1, member 1	protein-coding	4.97468755438551	4.81779686400005	4.74097610237461	4.85809650639826	5.11942856791512	5.34598865019797	5.34429184797829	5.22993251662581	0.776283585624737	0.0109490961850604	0.0842262744360117
Merged-chr13-45330641-1	chr13	45330541	45330741	+	790.0	f0_balb.idr	Intergenic	Intergenic	-59101.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	2.9152040474764	2.82002238005761	3.13961642390694	3.28490523067076	2.67548966702449	2.89351584294803	2.63838189629689	2.851520992379	-1.36253774676175	0.0417358890592775	0.206908731460332
Merged-chr7-101029581-4	chr7	101029473	101029673	+	961.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17520.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	5.80316098165425	5.77499494842278	5.4443135755275	5.63489113572009	5.01764893300138	5.12230371629043	5.0335120893826	5.16227159178849	-1.06281250882371	0.000245442338565592	0.00429668967455983
Merged-chr14-31019506-4	chr14	31019418	31019618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153547)	promoter-TSS (NM_153547)	-187.0	NM_001359855	66923.0	Mm.27913	NM_025847	ENSMUSG00000042323	Pbrm1	2610016F04Rik|AI507524|BAF180|Pb1	polybromo 1	protein-coding	6.12156606013703	6.51204562092038	5.94393156582958	6.19283430301816	6.12841004632874	6.37882347669763	6.30078209211651	6.11827424948427	0.0265528489750903	0.913605605619703	0.96760059818776
Merged-chr17-35051381-4	chr17	35051261	35051461	+	851.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033444, intron 1 of 5)	intron (NM_033444, intron 1 of 5)	1118.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	4.4611924787507	4.37737724797003	4.37727981405481	3.88120639923157	4.73359944069987	4.46227766754446	4.4412043920178	4.45901348410765	0.611547282999554	0.131863179681922	0.404250549856988
Merged-chr16-91916816-4	chr16	91916712	91916912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010587, exon 39 of 39)	3' UTR (NM_010587, exon 39 of 39)	14818.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	5.37260646978111	5.50559098060841	5.28573909318783	5.51775797695852	5.43890935448439	4.99708527225708	5.06504912874806	5.08610988626308	-0.464458791834196	0.127721908626015	0.397662410753708
Merged-chr9-50849456-4	chr9	50849359	50849559	+	936.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7465.0	NM_001034085	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	4.88969532344643	4.77168198485916	4.69156123524493	4.76490255780431	5.29580311877206	5.32680240252024	5.15951083297985	4.77169761242726	0.744153852244161	0.022726031855882	0.139269584284961
Merged-chr2-31761861-4	chr2	31761751	31761951	+	968.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	1678.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	5.60409275967763	5.72640598170638	5.50846082448013	5.32708234823028	5.06509057062419	4.96632919299904	4.88610956751489	4.7354302095958	-1.14312992146875	0.00030674852898798	0.00516782332422141
Merged-chr19-14636941-5	chr19	14636862	14637062	+	627.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38779.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	3.60293057482436	3.36890202704361	3.55491581405948	3.36927442068081	3.41849669385216	3.62116769300065	3.07329618404835	3.0084107484524	-0.588892027970995	0.310804750881709	0.622895916291507
Merged-chr16-95840050-4	chr16	95839948	95840148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040485, intron 3 of 3)	intron (NR_040485, intron 3 of 3)	58665.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	5.02322189524773	4.99870568372415	4.76283405510088	5.42174427143407	4.95575731503949	5.16333634328633	4.65633970403545	5.11796877604652	-0.21188950027033	0.549526916626354	0.798032733475074
Merged-chr19-41367372-4	chr19	41367286	41367486	+	985.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	17684.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	5.22766748715595	5.51258175326472	5.07694341692022	4.97736348412468	4.85407251451387	4.84226651449437	4.88113070767375	4.51903749612238	-0.834003283560953	0.0156796867436336	0.108165135696048
Merged-chr8-31123428-6	chr8	31123291	31123491	+	923.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175136, intron 2 of 5)	intron (NM_175136, intron 2 of 5)	11545.0	NM_175136	68867.0	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	4.08007247928526	4.20361619017555	4.51602576411135	4.42734413059385	4.59506929693221	4.37209231336338	5.21708503425369	4.51307331654092	0.871430212072062	0.0373673075801537	0.19294007986949
Merged-chr13-118387252-4	chr13	118387162	118387362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021556)	promoter-TSS (NM_021556)	-10.0	NM_021556	59054.0	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding	7.72752490480973	7.23231368427732	7.33328365269195	7.72802105970243	7.81273841021792	7.83300457089316	7.63484102597409	7.69162568661169	0.281672926666435	0.15204870845537	0.435906076000675
Merged-chr16-32643867-4	chr16	32643768	32643968	+	774.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016788)	promoter-TSS (NM_016788)	-775.0	NM_001110147	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	4.41192367759771	4.26230374552505	4.32890164272049	4.32585912120178	4.38358653877168	4.26832250959068	4.43182905767733	4.14061727583296	-0.0389858795356168	0.918553678185839	0.970054173425813
Merged-chr8-25241147-7	chr8	25241030	25241230	+	952.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39588.0	NM_177089	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	2.6411058654654	2.69172256687073	2.83947254667313	2.90933603249203	2.64465208406339	2.94699252797068	2.82927903378452	2.95486412944201	0.288966441439848	0.652677102147075	0.854764223296605
Merged-chr11-14443530-3	chr11	14443427	14443627	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10-int|LTR|ERVK	155698.0	NR_045918	73307.0	Mm.399291	NR_045918	ENSMUSG00000085561	1700046C09Rik	-	RIKEN cDNA 1700046C09 gene	ncRNA	3.49365502346216	3.37065100112227	3.49410311085947	2.95153932613309	5.56366424618249	5.23955362535147	5.26421235628718	5.08601813398084	6.03507565390164	6.82121278946921e-09	3.75794973019837e-07
Merged-chr19-10841820-4	chr19	10841716	10841916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023044)	promoter-TSS (NM_023044)	-728.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	8.36022817324471	8.51452061753606	8.36696080058601	8.37269202797827	8.45003583270301	8.27580702097864	8.46492071424642	8.38808964237484	-0.00748636293764368	0.960257957574432	0.985867606551139
Merged-chr10-43575176-3	chr10	43575081	43575281	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3988.0	NM_009846	12484.0	Mm.29742	NM_009846	ENSMUSG00000047139	Cd24a	Cd24|HSA|Ly-52|nectadrin	CD24a antigen	protein-coding	3.86624055025655	3.86894757390255	3.86681978891051	3.98379324940943	3.51039118889476	3.53816398255486	3.75379449251499	3.60575700243367	-0.924928511132776	0.0480757476875853	0.226231727919412
Merged-chr10-88622781-4	chr10	88622703	88622903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17651.0	NM_175418	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	6.00023522433431	6.17418492439338	6.49820644804716	6.4472136871509	5.41869479087333	5.5853965483909	5.78426888575129	6.10135214027427	-0.885865132038672	0.00158116382072072	0.019491801107565
Merged-chr15-62044896-4	chr15	62044786	62044986	+	884.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	5629.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	4.50509623977272	4.23832035437511	4.29149056568825	4.14285514925663	4.56685665992688	4.59617802975545	4.44511965742976	4.46285371335841	0.54701658324889	0.141900562588572	0.419107280640866
Merged-chr10-24869892-4	chr10	24869796	24869996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027347)	promoter-TSS (NM_027347)	-90.0	NM_001166416	70208.0	Mm.28020	NM_027347	ENSMUSG00000019984	Med23	130kDa|3000002A17Rik|Crsp3|ESTM7|Sur2|X83317|mKIAA1216	mediator complex subunit 23	protein-coding	8.76521499864372	8.79550790780644	8.75832327628568	8.93728230768923	8.72946772669247	8.68929772207158	8.80264393540649	8.61277287360779	-0.137114520961122	0.346292009989173	0.65459351955967
Merged-chr9-111081011-4	chr9	111080896	111081096	+	931.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23478.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	4.87894373312935	4.36511279833157	5.37346416841069	5.41911390985102	4.22166047270148	4.26938781309142	5.11020268603108	4.76525333941557	-0.871993346919804	0.0596219079322253	0.257420100977063
Merged-chr18-38212857-4	chr18	38212763	38212963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3101.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	6.49696716820941	6.26286703696778	5.55436269887877	6.51267083634074	6.38800845999252	6.37150386822567	6.34922677703897	6.46138393371341	0.180097131887529	0.515507610583804	0.777549028707689
Merged-chr5-114769727-3	chr5	114769632	114769832	+	918.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019834, exon 2 of 19)	exon (NM_019834, exon 2 of 19)	3759.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	4.05893347838338	4.21219834457439	3.96559662291564	4.3547619486589	3.87785382438005	3.87429432954949	3.94877698961734	3.43176282255224	-1.01078874569779	0.0336460750201873	0.180692166429901
Merged-chr7-137405397-4	chr7	137405288	137405488	+	915.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029886, intron 1 of 3)	L1MEc|LINE|L1	5368.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	4.84568114290725	4.46626167567102	4.54935133892847	4.69751930629972	4.4787838122075	4.29112696378011	4.82281715976633	4.80970411300233	-0.0666577350847565	0.858718339090243	0.946576014812915
Merged-chr8-108692432-4	chr8	108692340	108692540	+	840.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A2|LTR|ERVK	-22204.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	4.23178077622429	3.71308284722238	4.05675038277407	3.98979187116434	3.94276762744847	4.27323505227671	3.94243500297129	4.10046772277787	0.160187041177326	0.714355297267969	0.885790916272019
Merged-chr14-31597658-4	chr14	31597560	31597760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20277.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	5.70661888486925	6.38737207128751	6.02214608348237	5.52903694118431	6.7365389610596	6.85474989018241	6.63143838226114	6.57408874820117	1.13608556785645	2.68781230981292e-05	0.000660849023834799
Merged-chr1-34011509-2	chr1	34011391	34011591	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_133833)	promoter-TSS (NM_133833)	-334.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	5.4717747798625	5.00512105252283	5.44642034152877	5.37273272035287	5.01045808519176	5.22018676353396	4.98168691821207	5.59254344400174	-0.211544754104379	0.515860734699954	0.777831066095903
Merged-chr4-149701596-4	chr4	149701524	149701724	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029837)	promoter-TSS (NM_001029837)	5.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	4.7128749821164	5.2907152063324	4.97876332177	4.98706517816516	5.95471821836305	5.59388925515673	5.87935642549665	5.62490748829473	1.34244615726275	8.02270647553406e-06	0.00022633698938646
Merged-chr13-9472864-4	chr13	9472754	9472954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	196329.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	5.56036843698578	4.95200444421991	5.31392170646748	5.34399436199041	5.35915638879633	5.68251887937147	5.25705187360895	5.27953065128258	0.16709420023869	0.587792891628381	0.819357070175615
Merged-chr13-23575748-4	chr13	23575640	23575840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178204)	promoter-TSS (NM_178204)	-23.0	NM_178204	319149.0	Mm.347699	NM_178204	ENSMUSG00000099583	Hist1h3d	H3-b	histone cluster 1, H3d	protein-coding	7.19850453005659	7.48248154779672	7.28974474308402	7.36768075255705	7.34088141513323	7.60067008972983	7.68779131516897	7.68132913500675	0.314407664399806	0.0908614931744482	0.329365971820332
Merged-chr13-92030889-4	chr13	92030790	92030990	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42848.0	NM_009027	19418.0	Mm.248630	NM_009027	ENSMUSG00000021708	Rasgrf2	6330417G04Rik|AW048350|Grf2|Ras-GRF2	RAS protein-specific guanine nucleotide-releasing factor 2	protein-coding	5.8972611162112	5.57699436820528	5.67751924621915	6.22523746785779	5.05969185916892	5.09260508175173	5.35239376628075	5.02812707276354	-1.30742926403692	2.47491514006288e-05	0.000613377384242814
Merged-chr16-24629871-2	chr16	24629771	24629971	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-91984.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	4.66517202642538	5.32617047435855	4.99488585501181	4.83278556931703	4.80065297305078	4.75785726232813	4.64447172211477	4.62063037228988	-0.541670612042786	0.12853954645344	0.398913247084019
Merged-chr7-102338015-4	chr7	102337907	102338107	+	887.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 1 of 11)	intron (NM_009287, intron 1 of 11)	70183.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	5.10213034432191	4.69408377981339	4.51995188164691	4.67308592499993	5.08884458521211	4.74297285071329	4.6300397296849	4.97704424070042	0.250621039298007	0.485205872009071	0.759170664517368
Merged-chr19-43674996-4	chr19	43674869	43675069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145156)	promoter-TSS (NM_145156)	-88.0	NM_001356944	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	8.80339775077065	8.78429026559069	8.73873682992765	8.84603298133475	8.79779470594967	8.94586117149497	8.8836115420596	8.67252933348867	0.0401745388226731	0.782167223657645	0.915237231838361
Merged-chr4-101356266-4	chr4	101356165	101356365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040708)	promoter-TSS (NR_040708)	-17.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	6.50223204855704	6.45471798772938	6.82725829561632	6.42008510193164	6.49636380049686	6.5196200578372	6.65620529801055	6.57998090760253	0.017617638687711	0.935507967922786	0.976592986567772
Merged-chr13-114376718-4	chr13	114376624	114376824	+	868.8583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010887, intron 1 of 4)	L1MD2|LINE|L1	11370.0	NM_010887	17993.0	Mm.253142	NM_010887	ENSMUSG00000021764	Ndufs4	6720411N02Rik|C1-18k	NADH dehydrogenase (ubiquinone) Fe-S protein 4	protein-coding	4.47915529821289	4.47480558977961	4.75318159092229	4.15241055040105	4.88779488062604	4.56696666765836	4.45954956862391	4.81822565364873	0.522366340218031	0.175101232355685	0.469831987288867
Merged-chr9-9238501-3	chr9	9238400	9238600	+	947.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045754, intron 2 of 3)	intron (NR_045754, intron 2 of 3)	513.0	NM_027823	71544.0	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding	3.60469686681547	3.98026875223805	4.1152821402792	4.07567335337457	3.97529041909565	3.9539105599363	3.76556198486722	3.88300067180066	-0.185410873655546	0.683339569105483	0.870309436951249
Merged-chr2-160731341-4	chr2	160731304	160731504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021280)	promoter-TSS (NM_021280)	94.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	6.29640314759674	6.0510228129717	6.91328399235598	6.19614832922782	6.2328042085246	6.4551546941901	6.26521529808539	6.54899804705947	-0.030637424505254	0.910021956338515	0.966667455083261
Merged-chr12-85487954-4	chr12	85487889	85488089	+	948.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14099.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	4.3081022610209	4.27757863117196	4.01429432817811	3.81667393967435	4.50248908443551	4.5238248673095	4.41336886719434	4.43130962137993	0.89379956015818	0.0261498502058321	0.153094274370861
Merged-chr18-54847113-4	chr18	54847031	54847231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143049.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	6.83583096955777	6.67143132532776	6.35426712586743	6.87432998861247	6.50163489988573	6.60823401245281	6.90443090628479	6.94691383119666	0.0565975691136717	0.808213889720454	0.925986808363844
Merged-chr19-59239591-4	chr19	59239459	59239659	+	911.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19911.0	NM_207261	332396.0	Mm.329947	NM_207261	ENSMUSG00000040901	Kcnk18	Gm781|Tresk|Tresk-2|Trik	potassium channel, subfamily K, member 18	protein-coding	3.78659420136213	4.23359323150966	4.10242737604949	4.03701197802484	4.2596916591649	4.0765686329945	4.13002500161853	4.18989306128595	0.305826000450798	0.46155155610381	0.743302830494533
Merged-chr2-127308797-2	chr2	127308697	127308897	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-27362.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	2.75464359108723	2.97459286125447	2.69293410996102	2.27208636832645	2.45778932173293	2.73642533147005	2.61860432580899	2.48618748358989	-0.601602845836399	0.421980173528423	0.714380467869655
Merged-chr9-119334504-4	chr9	119334395	119334595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5545.0	NM_010851	17874.0	Mm.213003	NM_010851	ENSMUSG00000032508	Myd88	-	myeloid differentiation primary response gene 88	protein-coding	6.31298109900748	6.18449714229982	6.40634099797476	6.54345795462309	6.35156051687924	6.54678462572974	6.72600701899243	6.71477828370875	0.303369432682935	0.18509253241099	0.482890494611366
Merged-chr14-74847787-4	chr14	74847677	74847877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 2 of 19)	ORR1D1|LTR|ERVL-MaLR	100100.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	5.76610369848497	6.13844758881589	5.55538322268238	5.31597824943662	5.94539956373292	6.18343251224075	5.58334523098015	5.57991327677062	0.205982692684378	0.516142236814196	0.778006346996534
Merged-chr5-65832391-4	chr5	65832279	65832479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31190.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	7.52507145813348	7.86783748758691	7.50751374408951	7.52550993778483	7.66191260899715	7.94898791363674	7.60492841418775	7.73537035535398	0.165253871754414	0.373046254431537	0.67671796075698
Merged-chr5-124022546-4	chr5	124022446	124022646	+	981.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	9714.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	4.81912614142896	4.5746300257415	4.92572711751948	4.78249908427617	4.98177822340134	4.79787931674803	5.05913524163946	4.66063629869606	0.226897837467207	0.500915765351949	0.769036743031551
Merged-chr14-45107242-4	chr14	45107142	45107342	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112183.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	5.54486617685869	5.879886345416	6.52531560954378	6.48067372897678	5.48670285257036	5.31193647221592	5.81087736064701	6.01500585884565	-0.788063847620513	0.0188029209016449	0.122763998060739
Merged-chr9-78588631-4	chr9	78588539	78588739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276452)	promoter-TSS (NM_001276452)	-594.0	NM_001276452	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	7.68754560091213	8.06114719863873	7.63749953507287	7.85810456808258	7.81130673139859	7.70567405764435	7.72438445643708	7.85557582841761	-0.0651156383613157	0.713581165231946	0.885457948749053
Merged-chr2-83682831-1	chr2	83682731	83682931	+	560.5	f0_c57.idr	Intergenic	Intergenic	38253.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	2.3959538508543	2.26717107713525	2.31310125783418	2.17191062157414	2.98869210573876	2.73203165963187	3.01718330566964	3.03019334550985	4.04793622128653	4.17463824937059e-07	1.57303639995738e-05
Merged-chr12-55080362-6	chr12	55080229	55080429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028314)	promoter-TSS (NM_028314)	-167.0	NM_011899	24067.0	Mm.471968	NM_011899	ENSMUSG00000073079	Srp54a	54kDa|Srp54	signal recognition particle 54A	protein-coding	6.71098385086702	6.58282655159374	7.07893242479726	6.09067165183625	6.48928355099355	6.94337593456665	6.02497823251276	6.34797947430961	-0.23429105848053	0.437370390026104	0.725658989975083
Merged-chr7-45434686-4	chr7	45434562	45434762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011304)	promoter-TSS (NM_011304)	-177.0	NM_030678	14936.0	Mm.275654	NM_030678	ENSMUSG00000003865	Gys1	Gys3|MGS	glycogen synthase 1, muscle	protein-coding	8.26397644378449	8.52496855138833	8.40426236503656	8.16061135047451	8.54031636645398	8.84675827878876	8.41657148088426	8.43507156491154	0.287737428959071	0.103140092537035	0.352778237671439
Merged-chr8-105637253-1	chr8	105637153	105637353	+	872.5	f0_balb.idr	promoter-TSS (NR_151743)	promoter-TSS (NR_151743)	97.0	NR_151743	546100.0	Mm.471801	NR_151742	ENSMUSG00000098120	Gm5914	-	predicted gene 5914	ncRNA	4.42826071114925	4.16147093564535	4.42898395037522	3.83511570591952	4.22923599017544	4.01694434155768	4.36784245431975	4.74213192792474	0.341928153915237	0.44464697768417	0.73102037705466
Merged-chr2-143862786-4	chr2	143862707	143862907	+	829.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009751, exon 1 of 8)	exon (NM_009751, exon 1 of 8)	366.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	4.16645505676318	4.23846802743828	4.21430604442964	4.50452343694128	4.4579560876386	4.38631533702814	4.19612963037065	4.06479668340101	-0.028469562232551	0.944234173691831	0.979960985786931
Merged-chr4-141300399-3	chr4	141300283	141300483	+	893.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010139)	promoter-TSS (NM_010139)	-838.0	NM_010139	13836.0	Mm.2581	NM_010139	ENSMUSG00000006445	Epha2	AW545284|Eck|Myk2|Sek-2|Sek2	Eph receptor A2	protein-coding	3.82850051057216	4.16584235568897	4.32297872053644	4.27754592989957	4.04365635103348	3.83407288037514	3.7012107505015	3.77108140904899	-0.857210239279082	0.0618890940841018	0.263185794468412
Merged-chr9-44076908-4	chr9	44076795	44076995	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198092, intron 2 of 12)	intron (NM_198092, intron 2 of 12)	7466.0	NM_016808	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	4.38793968596889	4.45386849543579	4.34436887465952	4.3129151034424	4.39569707920109	4.04869489953784	4.6732629614753	4.72652239615099	0.26569759538758	0.501439002085042	0.769227796661534
Merged-chr11-23597501-3	chr11	23597405	23597605	+	905.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027860, intron 12 of 21)	intron (NM_027860, intron 12 of 21)	36126.0	NM_001347242	71675.0	Mm.48031	NM_027860	ENSMUSG00000042208	0610010F05Rik	Kiaa1841|mKIAA1841	RIKEN cDNA 0610010F05 gene	protein-coding	3.69514412456891	3.64199063688643	3.74537813870047	3.90377393590826	3.47610542529751	3.32250435203237	3.57618494732117	3.79089824576277	-0.651026403734985	0.192039595164608	0.491538219433335
Merged-chr14-14603669-4	chr14	14603566	14603766	+	883.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99359.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	4.79419921298338	4.48323242661812	4.68604092454777	4.96538321606429	4.59881270006277	4.65603625586286	4.58660752801283	4.43272692669452	-0.403039321245586	0.265088773216202	0.576956662317123
Merged-chr2-117304505-2	chr2	117304405	117304605	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 3 of 16)	intron (NM_011246, intron 3 of 16)	38372.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	3.82615922415033	3.77396846550788	3.52873830316313	3.64624123450376	4.0856303750241	3.94889822567857	4.32511790847201	4.15265083790861	1.2158031004738	0.0055482953773891	0.051308576934803
Merged-chr19-5649679-4	chr19	5649639	5649839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12249.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	7.45618467372304	7.12262840606636	7.44863808298607	7.16313476455428	7.04457140513266	6.82272401568567	6.76719893199612	6.6885729464983	-0.622704038208419	0.0026900402400803	0.0293402350978663
Merged-chr12-44171628-3	chr12	44171530	44171730	+	922.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38438.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	3.53634724251933	3.35982338327542	3.6675285541788	3.68765889011288	3.99058340523399	4.31088192556677	4.39100228055094	4.57526400169492	2.02737046596021	3.13386456383917e-05	0.000754363698983795
Merged-chr17-81669392-6	chr17	81669247	81669447	+	986.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	69040.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	4.79385028912405	4.75311919115151	5.27595999780137	5.24657206116303	4.7478121872336	4.62167142158304	4.88314401258513	5.03878228728264	-0.436404855834821	0.216559920589934	0.523180271532754
Merged-chr19-24280420-4	chr19	24280286	24280486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008044, intron 1 of 4)	CpG	200.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	6.82023531005704	7.27541020541339	7.48934765075358	7.11074200657805	6.57655711210921	6.8161737154365	6.71376007163934	6.66561034440316	-0.7028605444442	0.00138656611454518	0.0175394329957724
Merged-chr14-27355255-4	chr14	27355139	27355339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	L1MC4a|LINE|L1	-6150.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	6.70876426181932	7.10989393108443	6.7244081974036	5.94608172924123	7.01332845948892	6.9704547141818	6.3084278556732	6.14827554548436	-0.0174707490683069	0.956915632897105	0.984757116793997
Merged-chr2-35696561-4	chr2	35696462	35696662	+	909.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290639)	promoter-TSS (NM_001290639)	-170.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	5.00459892928977	4.69066744449086	4.70320799122475	4.86355373724477	4.63369851919308	4.58351064800493	4.38644454743957	4.58095836990014	-0.580047839547846	0.0985611283631061	0.344072669754539
Merged-chr17-35779712-4	chr17	35779628	35779828	+	959.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045459, intron 2 of 2)	intron (NR_045459, intron 2 of 2)	7278.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	5.09085546307943	4.715896653659	5.36298187333104	5.30247922291524	5.80092441263492	6.05463929349016	5.63263722999422	5.657663869897	1.11163362032373	0.000346800593700517	0.00570353961622206
Merged-chr1-132318665-4	chr1	132318567	132318767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195025, intron 1 of 7)	intron (NM_001195025, intron 1 of 7)	2542.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	7.10979329142357	6.82328453317407	7.50212600980068	7.69597696718438	7.13023468423416	7.08476123274428	6.8856179408251	6.81612691416704	-0.475370117551463	0.0521450631120516	0.237739655400358
Merged-chr17-44076192-4	chr17	44076098	44076298	+	976.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-2604.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	5.45661146081874	4.98930727256353	5.11798958613758	5.05864793187494	6.04459831578661	6.16163210144399	5.89697278427359	6.07860052672489	1.50306326838866	2.49252124102043e-08	1.21934824339927e-06
Merged-chr1-161969140-4	chr1	161969038	161969238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204905)	promoter-TSS (NM_001204905)	10.0	NM_001204905	75368.0	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	7.18096606682387	7.23544759481461	7.19337421043306	7.00912583210783	7.05765785024268	7.15283219202044	7.46927811347455	7.14309315069667	0.0840087973267919	0.667531635176028	0.86253080146304
Merged-chr9-66284033-2	chr9	66283933	66284133	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66417.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	3.10655783083942	3.11811451372405	3.10691518022981	3.09068352443156	3.42257730342492	3.3416109895894	3.15823041152757	3.48977568254681	0.95386254002833	0.0740992425711002	0.29326160617005
Merged-chr4-129113216-2	chr4	129113116	129113316	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286081, intron 2 of 3)	intron (NM_001286081, intron 2 of 3)	6956.0	NM_001286083	15444.0	Mm.384452	NM_010471	ENSMUSG00000028785	Hpca	-	hippocalcin	protein-coding	3.2500191897745	3.75234866997968	3.3131133330157	3.15846462739141	3.35994023138644	3.48806641173059	3.52291185995301	3.53570591973693	0.306545125471331	0.570842574437504	0.810229892705655
Merged-chr2-45236358-4	chr2	45236252	45236452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118910.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.93791071499091	7.99986386877669	7.90407043491261	7.75720304228813	7.947779551289	7.9928615920973	7.82253968861637	7.45897179879777	-0.0962760298194229	0.60495554075729	0.828653114378476
Merged-chr4-19709161-4	chr4	19709046	19709246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276292)	promoter-TSS (NM_001276292)	-142.0	NR_074090	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	8.62351266076326	8.71136102989955	8.75591783770043	8.75667360102215	8.65340306208613	8.82100397299056	8.98340967945002	8.69094883069145	0.0960735876069115	0.529627592058415	0.78577619366598
Merged-chr8-67813793-4	chr8	67813683	67813883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177698, intron 8 of 14)	intron (NM_177698, intron 8 of 14)	4512.0	NM_027626	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	5.37037426355145	5.22913832624511	5.66128534489046	5.95622491542957	5.46331021902308	5.32312271547474	5.18827955504325	5.03102894611147	-0.587610382466908	0.0720914935821461	0.288491618692504
Merged-chr17-48249286-2	chr17	48249186	48249386	+	899.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021407, intron 1 of 3)	intron (NM_021407, intron 1 of 3)	1557.0	NM_021407	58218.0	Mm.302438	NM_021407	ENSMUSG00000041754	Trem3	BB134760	triggering receptor expressed on myeloid cells 3	protein-coding	3.12222728261412	3.34324263298676	3.18203704488781	3.10993443943051	3.40200311607226	3.23301353751538	3.17017556844409	2.77697491721393	-0.0765636679915836	0.900386672023762	0.963086977653908
Merged-chr10-8776131-4	chr10	8776022	8776222	+	970.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	109948.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.38758415289751	5.49662727560035	4.97100428649852	4.30094325449717	5.41663640140996	4.87835637746733	4.53913188160057	4.81824407247291	-0.298552866956482	0.500791507110381	0.769017904448726
Merged-chr7-98053879-2	chr7	98053779	98053979	+	767.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001256082, exon 46 of 49)	exon (NM_001256082, exon 46 of 49)	55369.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	3.02937571284498	3.20762577976686	2.8077480604599	3.01517577643168	3.33803784041143	3.50433563245553	3.26594336149331	3.57864863433701	1.49091743249874	0.00938124893518751	0.0754432174847714
Merged-chr11-78183562-4	chr11	78183460	78183660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207523)	promoter-TSS (NM_207523)	24.0	NM_207523	268449.0	Mm.22723	NM_207523	ENSMUSG00000058546	Rpl23a	BC029892|MDA20	ribosomal protein L23A	protein-coding	6.80097102452831	6.8087204431962	5.63876853276841	6.13692134033856	6.51884040316006	6.5790317866479	6.24227586495046	6.14880361128872	-0.0680422516187902	0.829771013552359	0.934618333601978
Merged-chr8-36267447-4	chr8	36267334	36267534	+	719.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-17918.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	4.16831083785576	3.79379141697286	4.24604988931327	3.93041721049219	4.0172650203579	3.40789512734523	3.67734207286499	3.74579077762438	-0.851787601704431	0.0928250244524873	0.333376679726706
Merged-chr3-69908216-3	chr3	69908126	69908326	+	651.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48332.0	NM_001286959	66183.0	Mm.45481	NM_133675	ENSMUSG00000043461	Sptssb	1110032A04Rik|ADMP|Sssptb	serine palmitoyltransferase, small subunit B	protein-coding	3.25537780419825	3.29865011182196	3.37044923942208	3.42051527786987	3.47331869113566	3.30444229397735	3.30221877038489	3.31268314080389	0.0428890263742242	0.934139691246017	0.976284535018447
Merged-chr1-52800513-4	chr1	52800408	52800608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008384, intron 1 of 5)	intron (NM_008384, intron 1 of 5)	17180.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	7.3139335163876	7.75889173158833	7.70808424553498	7.86590638291081	7.93243258313621	7.90992180661643	7.78033890181654	7.88603857070264	0.248865412785733	0.180684173744348	0.47704412057244
Merged-chr17-31057988-9	chr17	31057875	31058075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 1 of 14)	CpG	281.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	5.562374778642	5.80385229969702	5.87825640315684	5.53185278097359	5.34417923106318	5.50066193427897	5.68947841630983	5.83049764455513	-0.163753130741745	0.561768632687124	0.805149296378326
Merged-chr2-5711705-3	chr2	5711621	5711821	+	727.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	B4A|SINE|B4	3041.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	3.34142509806759	3.32516433148723	3.28313236257315	3.67683755793621	3.30117341571479	3.33234924553888	3.27166994590376	3.5013744910869	-0.27713137269741	0.607886099188625	0.830283203337722
Merged-chr13-117034019-7	chr13	117033909	117034109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-8493.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	5.29386389121309	5.08164826447664	5.93218054719884	5.49228166067767	5.31072748864424	5.61968675282573	5.16998470375309	5.6006928681113	-0.0897198928819084	0.784236343422009	0.915972189024067
Merged-chr7-102229869-4	chr7	102229759	102229959	+	978.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111937, intron 2 of 5)	intron (NR_111937, intron 2 of 5)	6831.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	5.01746098509018	5.52975795438132	5.4738298332886	5.0536984650221	5.3173935505552	5.15870840391824	4.95757057386037	5.18541884819439	-0.209623068902168	0.516696820149688	0.778369586485389
Merged-chr14-79558033-4	chr14	79557931	79558131	+	968.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	intron (NM_007920, intron 2 of 8)	-29629.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	5.19956212486975	4.81527414613592	4.65010652616271	5.40777157432453	5.36044586783215	5.21541775281815	4.91263262847648	4.81799673889781	0.0609570573409644	0.869404749564013	0.951025031665314
Merged-chr6-125449866-4	chr6	125449751	125449951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44909.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	5.18659961034863	5.17898178764113	5.08283775877274	5.57819272702315	5.30353997172195	5.22457758473507	5.53379175464328	5.67664564968303	0.26689254239357	0.396536278628594	0.695232666055094
Merged-chr18-62069026-4	chr18	62068922	62069122	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110959.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	5.33315403636888	5.11278794838414	5.15570777653039	5.39961413685763	5.14367027806976	5.16084003111481	4.72387812707044	5.11986681625252	-0.399223555345318	0.205350211525559	0.508882174779019
Merged-chr3-133623443-8	chr3	133623307	133623507	+	991.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79017.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	4.79357891369803	4.4834439229978	4.69318194772628	4.39470108360271	4.23606109558952	4.63547746819607	4.39947715884538	4.12531374211513	-0.535782264660507	0.174587715488755	0.469069910997419
Merged-chr18-60848991-4	chr18	60848873	60849073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198984)	promoter-TSS (NM_001198984)	-9.0	NM_001198984	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	8.15338070479259	8.10560145162744	7.73750747281844	7.83944049918733	8.11716047172053	8.25159524329657	8.11603695607386	7.92616212853981	0.179990679498879	0.314329314081381	0.626354487695056
Merged-chr8-75099951-4	chr8	75099868	75100068	+	843.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010442, exon 5 of 5)	exon (NM_010442, exon 5 of 5)	6350.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	4.05731566603761	3.96506443382531	3.81560669755438	3.6629619823688	3.91192519766336	4.22662584996688	3.99511232474899	3.51686499368661	0.164754161628858	0.73085881455321	0.893308140483952
Merged-chr7-101427904-4	chr7	101427754	101427954	+	850.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008548, intron 1 of 30)	intron (NM_001008548, intron 1 of 30)	6163.0	NR_152192	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	3.62097363771486	3.9178865560432	3.43742751943538	3.76811069055153	4.01393772177633	3.79537118970285	3.76734762794449	3.83027943972323	0.451075279806832	0.341008404204959	0.650148315286463
Merged-chr7-5058047-1	chr7	5057947	5058147	+	627.0	f0_c57.idr	exon (NM_001290432, exon 4 of 6)	exon (NM_001290432, exon 4 of 6)	1321.0	NM_146178	232821.0	Mm.482157	NM_146178	ENSMUSG00000035228	Ccdc106	BC018462	coiled-coil domain containing 106	protein-coding	3.585542823178	3.61616452438165	3.75606709210482	3.60455394950634	4.06082538051822	4.07573499481141	3.84183989805112	3.90413751148256	0.9798367110833	0.0265649913312134	0.154657954563308
Merged-chr4-55480658-1	chr4	55480558	55480758	+	667.0	f1_balb.idr	Intergenic	CpG	51817.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	2.61151878202352	2.76987028351146	2.61176526624082	2.66918264792921	2.76353738738834	2.8547421501966	3.02301615997882	2.86970667634036	0.977479546502335	0.118217423420467	0.380320812729737
Merged-chr4-3627196-4	chr4	3627074	3627274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-29332.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	6.84574214884999	7.16841458107938	7.10281723894452	6.81011583526156	6.70393312880946	7.25601506202173	7.37227114331588	6.89756928484639	0.126558274974513	0.585424762998591	0.818171082500724
Merged-chr7-141435296-4	chr7	141435199	141435399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177576)	promoter-TSS (NM_001177576)	76.0	NM_001360723	68267.0	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	6.72303162591167	6.44688971050286	6.65256948211726	6.50594834455084	6.49656888133595	6.68738525955455	6.41083676535063	6.33011183403833	-0.135409214370053	0.532987175637713	0.788398805429988
Merged-chr5-96210100-4	chr5	96210003	96210203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053158)	promoter-TSS (NM_053158)	-12.0	NM_001039084	94061.0	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	7.77851772507812	7.50735857310388	7.27146858777675	7.82358722695073	7.6771097695407	7.78651304145889	7.85071249742115	7.44651901923406	0.100117039093333	0.620843030479161	0.837505658418956
Merged-chr3-60501849-4	chr3	60501757	60501957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	678.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	6.02950425332839	6.17238267299352	6.37728029035919	6.52825759809598	6.26533872588093	6.4226938328171	6.84868172165901	6.45883179694053	0.307813082223239	0.223646953424038	0.531766652116835
Merged-chr12-100440282-3	chr12	100440171	100440371	+	952.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	80551.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	4.66882862959966	4.2113017400441	4.13357685838649	3.94689951537289	3.7838658956216	4.01315847696521	3.64118723892491	3.65247908077877	-1.31633355525033	0.00683531400694254	0.059858614136339
Merged-chr7-16272950-4	chr7	16272853	16273053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001136270, exon 1 of 1)	exon (NM_001136270, exon 1 of 1)	739.0	NM_001136270	66300.0	Mm.218698	NM_001136270	ENSMUSG00000091811	Inafm1	2610014I16Rik|Prr24	InaF motif containing 1	protein-coding	5.43871568929722	5.9030553279441	5.88628343223733	5.67592992317426	5.72508248425907	5.55500573939195	5.92053111154815	6.02802873319193	0.132700514585316	0.627390717235431	0.841151302397407
Merged-chr2-167271314-4	chr2	167271224	167271424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30787.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	6.11468210963085	6.03514817650011	6.33562551725814	6.61006359995529	6.41801208288868	6.37713540371677	6.55075743903598	6.53378660174029	0.232447938927239	0.34160965467697	0.650639445837748
Merged-chr11-45884214-4	chr11	45884101	45884301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045520, intron 2 of 11)	intron (NM_001045520, intron 2 of 11)	32237.0	NM_001045520	216705.0	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	5.67081028171587	5.71251030914388	5.51361291152195	5.51944892842246	5.74894778952528	5.60248427236408	5.39956862380637	5.56466359066776	-0.0144469722735745	0.95717024860412	0.984757116793997
Merged-chr12-8674583-4	chr12	8674527	8674727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030723)	promoter-TSS (NM_030723)	-54.0	NM_030723	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	5.82057469486149	5.93668028591793	6.65279637161036	5.87264262338423	6.12468939440881	6.12043635647627	6.04477976674009	6.11275329603372	-0.0104294370015712	0.970511999298828	0.989436241028349
Merged-chr10-123209709-2	chr10	123209599	123209799	+	845.333374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-12680.0	NM_001301628	14479.0	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	3.31265758066396	3.08995640580102	3.09937815197158	3.20740213684649	2.83124485616824	2.87636275375848	2.96752592275612	3.09775351219491	-1.00816462279054	0.0914281737658351	0.330444093656869
Merged-chr4-89212419-3	chr4	89212323	89212523	+	846.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	69769.0	NM_001040654	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	4.16281207140831	3.95215306070107	4.24770156268458	4.27565586285912	3.98415887934065	3.99242808214042	4.14480392368323	3.69436780188373	-0.545209485376653	0.211116750534618	0.515756424571101
Merged-chr5-123058001-4	chr5	123057921	123058121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11005.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	7.71158182674347	8.0285158605942	7.5396266714547	7.08980350881326	7.84360288963268	8.12552710069225	7.46486052848315	7.70761895460978	0.230585929396817	0.346396307438954	0.654668970506009
Merged-chr13-111797208-4	chr13	111797098	111797298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	11795.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	7.02257032934294	7.15528823565946	6.98547913675812	7.15713680964905	7.24081914789608	6.95226778335523	7.45376909183026	7.01884437908841	0.134039815747477	0.50621351378887	0.771888853855569
Merged-chr7-106236873-4	chr7	106236794	106236994	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21554.0	NM_029000	74558.0	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	4.89655835616706	4.55184820114698	4.740409412689	5.10923881576245	5.63790881987664	4.83066665047248	5.25628067441718	5.30594379943236	0.864134789502917	0.0183710861376072	0.121021336435793
Merged-chr1-171233538-4	chr1	171233437	171233637	+	986.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010185, intron 1 of 4)	intron (NM_010185, intron 1 of 4)	812.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	4.49721187976522	4.65797694846338	4.57791902656707	3.89242623457482	4.81585230795258	4.85960369055573	4.20528812021907	4.16909432920067	0.274076076121654	0.547698945342104	0.796971609095299
Merged-chr7-143449747-4	chr7	143449639	143449839	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11311.0	NM_009876	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	4.23786035283608	4.63675434929802	4.74379275162835	4.71483045668059	4.81720428403622	4.87917406160522	4.9296326928539	5.07327427703094	0.6523477264139	0.0640755074466154	0.268916895315014
Merged-chr4-154961514-4	chr4	154961411	154961611	+	872.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010419, exon 3 of 3)	exon (NM_010419, exon 3 of 3)	588.0	NM_010419	15208.0	Mm.137268	NM_010419	ENSMUSG00000048001	Hes5	bHLHb38	hes family bHLH transcription factor 5	protein-coding	4.07308792248049	4.14980438476289	4.07368564138054	4.24785988867939	4.21472120473847	3.98529174044853	3.79132024715321	4.51606320751497	0.0363273125820032	0.93425026372914	0.976332045936076
Merged-chr2-140395338-4	chr2	140395226	140395426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013802)	promoter-TSS (NM_001013802)	-104.0	NM_001013802	72899.0	Mm.229466	NM_028387	ENSMUSG00000068205	Macrod2	1110033L15Rik|2610107G07Rik|2900006F19Rik	MACRO domain containing 2	protein-coding	8.00177024327744	8.13411967614276	7.69437457584627	8.40202691847372	6.63546587633446	6.88900783971752	7.10786705474315	6.98178851100464	-1.57808361511358	5.24336796195374e-13	5.93350855586495e-11
Merged-chr12-84219426-4	chr12	84219323	84219523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163501)	promoter-TSS (NM_001163501)	-542.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	5.76035914115383	5.95815527004009	6.06204086281773	5.83451067124625	5.74023800091402	5.51270561078125	5.63178449978023	5.45783086300269	-0.503008090437486	0.0548521885802694	0.244662484707043
Merged-chr7-126695863-4	chr7	126695766	126695966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029420)	promoter-TSS (NM_029420)	-83.0	NR_033446	75764.0	Mm.280573	NM_029420	ENSMUSG00000059772	Slx1b	1110030E23Rik|2410170E21Rik|4833422P03Rik|AI853643|Giyd1|Giyd2	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	protein-coding	7.85027522343239	8.10234482120395	7.33242509711486	7.45810265143064	7.68550804421159	7.692348777344	7.74719010498442	7.44181962542597	-0.0957402364182575	0.663515887334874	0.860575753363866
Merged-chr18-67406582-4	chr18	67406478	67406678	+	967.654785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027130, intron 16 of 16)	MIR|SINE|MIR	15847.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	4.62178964771192	4.82077369130084	4.94611598331366	5.19002018362516	5.07814609638331	4.61176826816131	5.26237283147454	5.43882107743784	0.396737007015817	0.281822816089422	0.593954970650299
Merged-chr11-98360729-2	chr11	98360629	98360829	+	840.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021547, intron 1 of 14)	intron (NM_021547, intron 1 of 14)	2361.0	NM_021547	59045.0	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	2.79547738112596	2.80486887079629	2.79582548779818	2.66440422536503	2.67936589183158	2.77224292055847	2.65907116619105	2.85413217004324	-0.0943841075674367	0.880690617634603	0.955211005891163
Merged-chr6-128764273-4	chr6	128764168	128764368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24373.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	7.97724903357402	8.15280232326768	7.86803095702529	7.96721984789423	8.249136352412	8.33961250299128	8.03514257567029	8.55439268279569	0.397410614008847	0.0254302321063762	0.150242343284202
Merged-chr12-57546911-1	chr12	57546811	57547011	+	729.25	f0_balb.idr	promoter-TSS (NM_008259)	promoter-TSS (NM_008259)	-800.0	NM_008259	15375.0	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	3.32033631939855	3.27170594853143	3.05352839565968	3.27354188813325	2.95808922747088	2.96526010681796	2.78476419625421	2.99082207493301	-1.33853769256579	0.0279500128946106	0.159975391430162
Merged-chr1-177191808-4	chr1	177191695	177191895	+	800.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	56972.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	4.0522852538294	3.76049053112669	3.90473452262422	4.32755790154254	4.10829191288403	4.02597920907429	4.12438319367234	3.90254588254698	-0.00488230268297076	0.991359318529097	0.996745793587504
Merged-chr2-25022286-4	chr2	25022193	25022393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146251, intron 20 of 34)	intron (NM_146251, intron 20 of 34)	-32086.0	NM_001177654	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	5.55549213072566	5.61116836479761	5.66838367155403	5.87662898201177	5.97963601844063	5.76293893204988	6.10224011605331	6.07259130426379	0.461550442591297	0.0745868036277566	0.294487136422237
Merged-chr15-95793966-4	chr15	95793863	95794063	+	982.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	3120.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	5.94716535471956	6.34008944284165	6.01304319080124	5.48065063686811	6.06906887900218	6.18794564012892	5.96103886539043	5.36575229881179	-0.0627997844439368	0.843875316769	0.940871871873885
Merged-chr12-69356712-3	chr12	69356607	69356807	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025441, intron 1 of 32)	MIRb|SINE|MIR	469.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	3.45177735486534	3.37023197801076	3.5043173274822	3.36490101640307	3.2353251893875	3.33177484733893	3.27054713545181	3.50227309991431	-0.299478632272997	0.562755779117865	0.805832530849589
Merged-chr14-46881112-4	chr14	46881014	46881214	+	944.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1851.0	NM_028966	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	4.66690338965442	4.14916222910229	4.2680965654738	4.74676232272395	4.74901892400855	4.76228994450565	4.78846672902725	4.80861205181674	0.591428473066463	0.123355195585397	0.389477432015077
Merged-chr9-20607430-4	chr9	20607334	20607534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033729)	promoter-TSS (NR_033729)	-41.0	NR_033729	66662.0	Mm.477847	NM_175110	ENSMUSG00000062470	Fbxl12os	5730577I03Rik	F-box and leucine-rich repeat protein 12, opposite strand	pseudo	6.48016103748343	6.42080115460617	6.49799962487456	6.44031294371907	6.52158662285179	6.5882784267239	6.44820829366903	6.52607439721758	0.0932597538265748	0.649996986985192	0.853021044216188
Merged-chr6-8744557-3	chr6	8744448	8744648	+	959.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252266, intron 3 of 11)	intron (NM_001252266, intron 3 of 11)	13910.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	3.87086422155542	3.63019032486812	3.72184387817577	4.17617490681383	3.44547584203176	3.66940868521919	3.75807981945607	3.7714974527803	-0.658719546328042	0.18563681646595	0.483574244399563
Merged-chr5-35235615-3	chr5	35235515	35235715	+	686.266663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42951.0	NM_007418	11553.0	Mm.57205	NM_007418	ENSMUSG00000045318	Adra2c	Adra-2c|[a]2C|alpha2-C4|alpha2C	adrenergic receptor, alpha 2c	protein-coding	3.369704943528	3.30267341977786	3.48378614164074	3.21680655969636	3.22257420575967	3.14853148146512	3.75664706191868	3.85567566277651	0.632938257011447	0.262436533895236	0.57424810151607
Merged-chr13-67683574-4	chr13	67683445	67683645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001187)	promoter-TSS (NM_001001187)	-33.0	NM_001001187	408068.0	Mm.435551	NM_175676	ENSMUSG00000048280	Zfp738	3830402I07Rik|6720487G11Rik	zinc finger protein 738	protein-coding	6.57985487943322	6.71777213933003	6.74161216092801	6.67476321364789	7.16693365868068	7.08736590427828	7.27648203619262	7.04296091980916	0.651905600197318	0.000630194931550058	0.00927748604608099
Merged-chr14-105275419-2	chr14	105275319	105275519	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029561, intron 1 of 7)	intron (NM_029561, intron 1 of 7)	16746.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	3.27259001091874	3.05609347841399	3.2166153241698	3.52937763539525	3.0877043410138	3.07033240456287	3.31360787054608	3.15606546937649	-0.504872485191911	0.381038235100959	0.683361146318908
Merged-chr12-88408416-3	chr12	88408310	88408510	+	967.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361601, intron 3 of 8)	BC1_Mm|scRNA|scRNA	-31087.0	NR_045888	71818.0	Mm.490789	NR_045888	ENSMUSG00000113434	3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	4.36428089585702	4.68833946376997	4.48917741481986	4.74822079438073	4.63901678149054	4.02428806509709	4.00277533326296	4.0714885682729	-0.831708898865864	0.059343641813775	0.256716973420608
Merged-chr15-93595839-5	chr15	93595719	93595919	+	977.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033217)	promoter-TSS (NM_001033217)	72.0	NM_001033217	106042.0	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	3.75298401515021	3.47188731660583	3.57049440297642	3.42723368556893	3.24774226522448	3.21093314416951	3.15863667634283	3.35436399083588	-1.116338227199	0.0390314810192513	0.198529497461004
Merged-chr8-46138358-4	chr8	46138173	46138373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14127.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	5.85917132509102	6.13470485661578	6.36078373877409	6.03402191992525	5.96789759599964	6.31965805042227	5.90165794576657	5.85604070137533	-0.133884635680721	0.602134085228511	0.827431600688833
Merged-chr6-121366747-3	chr6	121366648	121366848	+	811.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133661)	TTS (NM_133661)	20051.0	NM_133661	14411.0	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	3.72720866903784	3.62928888741009	3.30888829346363	3.58521179708773	4.27353156174742	3.55869549760201	3.80962508039375	3.61893072455765	0.850025884777386	0.103517925302936	0.353548409631863
Merged-chr7-127393744-4	chr7	127393659	127393859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198011)	promoter-TSS (NM_198011)	-138.0	NM_198011	101604.0	Mm.334241	NM_198011	ENSMUSG00000078580	E430018J23Rik	AI480612	RIKEN cDNA E430018J23 gene	protein-coding	7.33532480246056	7.38386842239802	7.20802036140002	7.07771706288128	7.52170247026029	7.48258516683012	7.28987472312433	7.22533306943624	0.190293193447631	0.31644599579994	0.628415856235358
Merged-chr5-64291076-3	chr5	64290981	64291181	+	862.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	L1MB8|LINE|L1	60724.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	3.3628382835529	3.47687287142392	3.30460202610295	3.79754233160328	3.35161214844952	3.14843561183148	3.35090363789605	3.47119567590921	-0.61699819232969	0.264729717829708	0.576566406596513
Merged-chr5-134688827-4	chr5	134688732	134688932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010717)	promoter-TSS (NM_010717)	-242.0	NM_010717	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	9.11498238558521	9.57349096762237	9.02340802224185	9.02718095767613	9.2397573547287	9.41470525668767	9.2549476294498	9.12396703032568	0.0690137005547862	0.697917698788401	0.878043796632193
Merged-chr1-167331326-4	chr1	167331232	167331432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039483, exon 7 of 7)	3' UTR (NM_001039483, exon 7 of 7)	-18659.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	6.87186521795667	7.08703589667913	6.84476881597754	7.10725435849746	7.22921440300229	7.11812566842667	7.06693389171537	7.15459088745858	0.209124121195323	0.274135360891619	0.58586083146894
Merged-chr2-127832331-4	chr2	127832240	127832440	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113179)	promoter-TSS (NM_001113179)	-481.0	NM_009772	12235.0	Mm.2185	NM_009772	ENSMUSG00000027379	Bub1	AL022991|Bub1a|C80208|D2Xrf87	BUB1, mitotic checkpoint serine/threonine kinase	protein-coding	4.76633448333884	4.95651012674795	4.22418912231641	4.61877205342021	5.1192309427233	4.86460790033079	4.66891197142233	4.60686904147496	0.354128472497808	0.356535095801765	0.662934917689554
Merged-chr1-155505168-3	chr1	155505060	155505260	+	977.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21951.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	3.66245930944404	3.5840419433785	4.10483921213892	4.39260482122912	3.55612845099975	3.65984814605414	4.23965839232544	3.47375582407226	-0.598253854613761	0.289321804693081	0.601308522016326
Merged-chr2-170159071-6	chr2	170158883	170159083	+	937.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR2b|LTR|Gypsy	-16308.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	3.57084629248969	3.43084031596165	3.57137390602214	2.85342572510916	3.50763015033489	3.32709611838228	3.74837061370856	3.71768598853759	0.654822038672547	0.265912704130094	0.577636047464703
Merged-chr10-127737183-4	chr10	127737078	127737278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2360.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	6.94257986834068	7.18892975947054	7.06758866587136	6.81486766337177	7.00049537534842	6.76336952888545	6.85572519506956	7.19654518490702	-0.0502355102602518	0.81035147949828	0.92679579587174
Merged-chr8-66486574-4	chr8	66486457	66486657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025465)	promoter-TSS (NM_025465)	-27.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	6.55050841074059	6.40061050658806	6.50226746106028	6.44913443291614	6.69154603198771	6.49939293884633	6.58089132402548	6.75467103999936	0.24166245247596	0.242215900897464	0.552905060931968
Merged-chr4-135070005-4	chr4	135069910	135070110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50635.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	6.91451608753579	7.11858297220882	7.44429116600832	6.994857935023	6.86402104622925	6.825841752625	7.14489582043533	6.84188387960911	-0.280424299596909	0.189595475608756	0.488556345737121
Merged-chr4-101692996-4	chr4	101692905	101693105	+	995.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24402.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	6.36189515113528	5.17188273086794	6.00944001533604	6.15060778417703	5.50526488433721	5.83551190674007	5.75673881021295	5.65403422649773	-0.494970604787436	0.131770504257048	0.404175330626236
Merged-chr15-98830885-4	chr15	98830832	98831032	+	885.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033276)	TTS (NM_001033276)	576.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	4.0617437850666	3.98750129679392	4.01299023561799	4.14731872376769	4.0911190887007	4.23424066265224	4.09212640346286	4.28128479972466	0.287554576370067	0.477079301284925	0.753320087442721
Merged-chr17-6654311-2	chr17	6654211	6654411	+	872.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166630, intron 1 of 4).2	intron (NM_001166630, intron 1 of 4).2	1520.0	NM_001166630	100040563.0	Mm.457381	NM_001166630	ENSMUSG00000000579	Dynlt1c	100040603|Dynlt1d	dynein light chain Tctex-type 1C	protein-coding	2.94384629864923	2.96067366440091	2.73463770565284	2.8891248731824	3.1072585029121	3.23719388185043	2.99658449841356	3.28174757185752	1.11627801862916	0.0562917971431643	0.248421714232333
Merged-chr12-111930537-4	chr12	111930466	111930666	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13916.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	5.54935839255805	5.21814538603658	5.44816972134919	4.9046515013839	5.14826823531803	5.06977796825338	5.5461585458489	5.24289375462759	-0.0394557782596948	0.904991447652208	0.964695555007872
Merged-chr16-57546567-4	chr16	57546469	57546669	+	972.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-2673.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	5.10922050748046	5.58909590579975	4.88995985494347	5.35819723214766	5.17667216742213	5.49873952775388	5.0512636913741	4.80442450085425	-0.214641626795906	0.535605413421662	0.789809240803911
Merged-chr17-17398855-4	chr17	17398754	17398954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3832.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	6.96081026951805	7.41476916125366	7.31448191172063	7.36808745484887	6.69972717250591	7.04424833675244	7.06298341040151	6.83308966889195	-0.511006493256601	0.0141384920914661	0.100646437501597
Merged-chr14-33243498-4	chr14	33243394	33243594	+	906.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	26671.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	4.80365410050186	5.11454481722143	5.32467873402856	5.55467264075983	3.86312273776004	4.59690548782211	4.70388967471144	4.40838048656537	-1.71403569231174	5.07817088315209e-05	0.0011474892866409
Merged-chr10-29313429-4	chr10	29313316	29313516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025855)	promoter-TSS (NM_025855)	-84.0	NM_025855	52665.0	Mm.28930	NM_025855	ENSMUSG00000019883	Echdc1	1700028A24Rik|AI314462|AI930038|D10Ertd667e|MMCD	enoyl Coenzyme A hydratase domain containing 1	protein-coding	7.94149846426969	7.96245105667267	8.46703244415502	7.86184747714852	7.66964989315701	7.90713683485189	8.00526524940711	7.60205964059717	-0.352169025725695	0.0864135009650989	0.320614223486651
Merged-chr4-32363701-4	chr4	32363567	32363767	+	963.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53768.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	6.19991878143505	6.40913768179767	7.27304297496796	7.51694931570666	5.65200204205199	5.26077216531731	5.77419801538588	5.56251704082935	-2.11489275724115	1.11632121939169e-09	7.12789320793636e-08
Merged-chr1-43827923-4	chr1	43827821	43828021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026430)	promoter-TSS (NM_026430)	-213.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	9.00105882849375	8.86773163525761	9.1399070037225	8.85762519250046	8.58712315252749	8.83568537680144	8.91665894706518	8.71901034840408	-0.250260603807304	0.114304659822533	0.373897868239856
Merged-chr10-18423708-4	chr10	18423622	18423822	+	942.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173390, intron 1 of 6)	intron (NM_173390, intron 1 of 6)	16047.0	NM_173390	215819.0	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	5.17799450737182	5.10020270960515	5.17888311692627	5.25877285750462	4.56836490902738	5.12027515277412	5.32300320040364	4.7854077884905	-0.407499947248602	0.235669270342483	0.545646525172162
Merged-chr18-69299847-4	chr18	69299747	69299947	+	858.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44645.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	4.14338633242211	4.12750933158923	3.89622869624029	4.40925636863211	3.92745670150223	3.77727268584014	4.25280365490141	4.22841904247283	-0.287004939961927	0.522986381693059	0.782297943943055
Merged-chr18-6773458-4	chr18	6773372	6773572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181070, intron 2 of 6)	intron (NM_181070, intron 2 of 6)	8305.0	NM_001278447	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	5.86077900383066	5.7129638112963	5.97518115400762	5.74727080705098	6.31940744136577	5.93986694863499	5.94466178503687	5.97091536117089	0.393657343989113	0.118801193977508	0.381337099712516
Merged-chr2-144047108-4	chr2	144047008	144047208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001044750, intron 1 of 2)	intron (NM_001044750, intron 1 of 2)	14006.0	NM_207275	403171.0	Mm.389362	NM_207275	ENSMUSG00000037307	Banf2	4930517K23Rik|Baf-L|Baf-like|Gm115	barrier to autointegration factor 2	protein-coding	6.45096780769764	6.72656823902273	6.51939326113288	6.56895383669492	6.45807183274843	6.20436500249915	6.73631962298404	6.37646024377662	-0.163154052938295	0.470114436851011	0.748898337151831
Merged-chr3-116227088-2	chr3	116226988	116227188	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	26396.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	3.56257170221136	3.28054126396009	3.80538236318464	3.48074184257589	3.49225566003535	3.68022337991885	3.38002498672735	3.56105542057076	-0.029518679418111	0.954005871027256	0.983619906915943
Merged-chr9-118150158-4	chr9	118150058	118150258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026442)	promoter-TSS (NM_026442)	38.0	NM_026442	67899.0	Mm.9953	NM_026442	ENSMUSG00000039163	Cmc1	2010110K16Rik|2010312P05Rik|AI596001	COX assembly mitochondrial protein 1	protein-coding	6.7515908918719	6.94712446332431	6.70775815882591	6.64899802424214	6.87407372848548	6.94426188266871	7.27701232901058	6.64037950866923	0.264430207816865	0.232085876293296	0.541650357752844
Merged-chr5-28209989-2	chr5	28209889	28210089	+	793.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310511, exon 1 of 3)	5' UTR (NM_001310511, exon 1 of 3)	179.0	NM_001310511	269637.0	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	3.3006046760596	3.29511819408006	3.41672071792464	3.29269859411891	3.70775213633805	3.41365018855057	3.50822172087676	3.2993806034624	0.603298918526514	0.239708652454821	0.550199031733311
Merged-chr4-43431879-4	chr4	43431746	43431946	+	919.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2712.0	NM_001162381	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	4.34700609938565	4.08635456467729	3.92911001493344	3.93651979713285	4.26738264837517	4.34955889683593	3.96665171739772	4.30463506095743	0.393427919125967	0.347487612281483	0.655506340921964
Merged-chr18-69345944-4	chr18	69345758	69345958	+	863.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361126)	promoter-TSS (NM_001361126)	137.0	NM_001361127	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	3.28200897749425	3.35800787282423	3.68086511768141	3.14827130583156	3.30708605500829	3.20523898098418	3.32655996190076	3.09279400551185	-0.492731937116774	0.382366962133565	0.684467922382743
Merged-chr6-17800936-4	chr6	17800836	17801036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	51766.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	6.41600339334947	6.3298466554078	6.38108965666291	6.43892625384645	6.45034773177512	6.7274512712811	6.7364728242096	6.56299618312892	0.324401437162245	0.126507883179824	0.3953901463853
Merged-chr13-23718075-4	chr13	23717975	23718175	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7221.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	4.12094280779059	3.67052580880622	3.97121406087298	4.3307570478106	3.97300879031178	3.98397917320014	4.63052061994767	4.37515883402448	0.529270818757659	0.270004983180352	0.581767511754897
Merged-chr8-14883716-3	chr8	14883633	14883833	+	815.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4803.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	2.41971295145775	2.2124571288061	2.34080848305165	1.98652422614152	3.0660602229548	2.74664269051746	2.68722716722857	2.9270308931131	4.69525113381928	2.20169759812864e-06	7.11692249487732e-05
Merged-chr4-148604965-1	chr4	148604865	148605065	+	642.0	f0_balb.idr	TTS (NM_010767)	TTS (NM_010767)	2421.0	NM_001003893	17175.0	Mm.378962	NM_010767	ENSMUSG00000028979	Masp2	MASP-2|MAp19	mannan-binding lectin serine peptidase 2	protein-coding	3.09559828518322	3.22157364736241	3.39777599274226	3.22156858719205	3.07470101120294	3.39927936413446	3.6250412914507	3.39583029844714	0.52311174640361	0.343571228581957	0.65224333888351
Merged-chr2-45088781-2	chr2	45088681	45088881	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	21496.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	3.5267272784069	2.98505704806346	3.38066261144843	2.58651384833774	3.05717709754437	3.50035996743125	3.20194895335644	2.80651860037772	-0.0538907446632319	0.939378872871964	0.978073647911203
Merged-chr4-83417665-4	chr4	83417558	83417758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152448)	promoter-TSS (NR_152448)	-66.0	NR_152449	77634.0	Mm.271985	NM_029949	ENSMUSG00000028483	Snapc3	1810020H02Rik|4930558A07Rik|5031401C21Rik|AI414457|E030018J20Rik	small nuclear RNA activating complex, polypeptide 3	protein-coding	8.1090416985977	8.06221203380853	8.15924410686743	8.6036476788548	8.04342458290882	7.37748549106699	8.15585971136099	7.67865966215873	-0.519685243315913	0.0218697801865041	0.135965506497963
Merged-chr7-63855504-4	chr7	63855420	63855620	+	778.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61337.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	3.97130860691287	3.88878841298784	3.5472515311145	3.7509037984141	4.01394054987435	3.72578260522362	3.90890452430735	3.87582309868623	0.270065924781827	0.553049988343329	0.799974396526481
Merged-chr7-122206332-4	chr7	122206239	122206439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13157.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	6.57008991820531	6.55087569438803	6.35834631502014	6.75648375939849	6.6773704247555	6.59263095242035	6.91378947677402	6.89483987046016	0.277788693636962	0.202865605450023	0.505399563554906
Merged-chr18-26932540-2	chr18	26932495	26932695	+	697.75	f0_balb.idr|f1_balb.idr	Intergenic	RLTR45|LTR|ERVK	-1178438.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	3.1686463443973	3.00962829145152	3.33151618824558	3.1051428156191	3.07669842337845	3.02149619441409	3.21315763530177	3.27801335864863	-0.0160103543440239	0.977272225341789	0.991888117862217
Merged-chr13-119805856-4	chr13	119805748	119805948	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-14726.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	5.31528016774124	4.96142148274701	5.54066288402913	5.0657375166033	4.72064250132706	4.87456199138343	5.26184896836516	4.64522667436406	-0.649013402732905	0.067459390236971	0.277185934172912
Merged-chr10-36970941-3	chr10	36970814	36971014	+	879.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3630.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	3.17204130500929	3.07623101658487	3.29324954316834	3.39784762058882	3.59941182885592	3.40542195688771	3.33673563022232	3.23263663777679	0.552691564116244	0.312621919127999	0.62451046865229
Merged-chr13-67609238-3	chr13	67609163	67609363	+	810.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163246, intron 1 of 3)	intron (NM_001163246, intron 1 of 3)	444.0	NM_001163246	100416706.0	Mm.478045	NM_001163246	ENSMUSG00000058093	Zfp729b	AA987127	zinc finger protein 729b	protein-coding	3.67261160632841	3.60510211709088	3.67307063012139	3.76049044718595	4.580177046181	4.23572426580983	4.41181497796462	4.35702307687427	1.88088309685692	1.4686077914094e-05	0.000389036226217824
Merged-chr10-127615806-3	chr10	127615659	127615859	+	834.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	5389.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	2.57629682326224	2.77113775047629	2.57662872767077	2.3458158683736	2.47164326287446	2.40424974637695	2.29719035747409	2.44558023285335	-0.920704292636373	0.21403543902461	0.519693962624347
Merged-chr2-160020592-2	chr2	160020492	160020692	+	963.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_040499, intron 1 of 3)	intron (NR_040499, intron 1 of 3)	3939.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	3.12403671060447	2.61521372626004	3.01109852754252	2.81745850281863	2.8934299919346	2.99620631818389	3.16375721475505	2.9489463936043	0.436909257666628	0.48651875122352	0.760211581966916
Merged-chr10-51521677-4	chr10	51521590	51521790	+	803.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SSU-rRNA_Hsa|rRNA|rRNA	30792.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	3.36125150060221	3.77606912213934	4.02575141061522	3.55500107170803	3.69141737641654	3.66472513984564	3.6440290544724	3.60248418494397	-0.137312721895639	0.784492210496078	0.916076100794651
Merged-chr1-181247350-4	chr1	181247250	181247450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35372.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	7.24617262644171	7.74969936363818	7.16803750346608	7.07218583912492	7.21683141692831	7.56947519901957	7.36552003725453	7.31698213100136	0.0474178217520117	0.829860805639463	0.934660310209363
Merged-chr14-31482565-4	chr14	31482456	31482656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359849, intron 4 of 4)	intron (NM_001359849, intron 4 of 4)	12202.0	NM_001359850	67011.0	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	6.28066484112288	6.03401785266676	5.60061375528621	6.28647729259829	6.2983712233684	6.03166168692247	6.44953052700768	6.36492743339702	0.31267139550288	0.238725576435339	0.549093511442222
Merged-chr1-74245044-4	chr1	74244885	74245085	+	714.575012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	B3A|SINE|B2	8468.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	3.55113263246428	3.15054286386588	3.55161218151851	3.73719221850558	3.47106198022931	3.72408961192154	3.69289706706978	3.8462145520128	0.504398722363084	0.341489860020779	0.650546636435835
Merged-chr13-63148289-1	chr13	63148189	63148389	+	810.0	f0_balb.idr	intron (NM_001289926, intron 5 of 15)	intron (NM_001289926, intron 5 of 15)	-91740.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	3.11384675360603	3.25615538490195	3.78241804787422	3.59572378153933	2.93137534888671	2.7849721768183	2.75255948448362	3.04862456570402	-2.4795427705671	0.000466387386689002	0.00729576721643679
Merged-chr1-120451725-2	chr1	120451677	120451877	+	760.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	53247.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	2.94951489344235	2.72953023714731	3.28067918320533	2.73670121838371	3.31316474026412	3.6679325233921	3.62048226246708	3.44405034990169	2.25493647528969	0.0002283794520718	0.00405989535939526
Merged-chr11-74995084-4	chr11	74995001	74995201	+	825.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 10 of 18)	intron (NM_001002764, intron 10 of 18)	69229.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	3.49444550358176	3.32273103099146	3.37362388482436	3.54462578862715	3.79055556741232	3.66835607762631	3.87261889390979	3.65595307202278	0.959788578479895	0.0479859780777008	0.226031800423853
Merged-chr13-43480411-3	chr13	43480290	43480490	+	905.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019930, intron 1 of 13)	intron (NM_019930, intron 1 of 13)	583.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	2.75246148773343	2.79991119613292	2.88886996842993	2.93000319760464	2.8953944081883	2.99756269962207	3.00084982126934	3.32176855976933	0.886527521422663	0.145382005480022	0.424835609165878
Merged-chr17-73935448-4	chr17	73935346	73935546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 5 of 35)	URR1A|DNA|hAT-Charlie	14750.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	6.87560774341631	6.76112577744606	7.63520905457047	7.5824340388909	6.85945242917779	6.84426608692644	6.77066509369241	6.88574790806929	-0.606776787700122	0.0179027627168733	0.118771623396806
Merged-chr2-170153819-4	chr2	170153726	170153926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11151.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	6.11736728521454	6.23259285381324	6.11844852628197	5.81849166326384	6.2055048349106	6.07502486449363	6.18381644235302	5.96411935294794	0.0773298849221893	0.752545706902723	0.902553434256667
Merged-chr11-80355008-4	chr11	80354893	80355093	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_139228, exon 9 of 9)	3' UTR (NM_139228, exon 9 of 9)	23022.0	NM_027472	70591.0	Mm.86860	NM_027472	ENSMUSG00000057181	5730455P16Rik	-	RIKEN cDNA 5730455P16 gene	protein-coding	4.70755927700518	4.62923930692895	4.21533319248235	4.39947220470374	5.17997855116937	4.91673700147926	4.60968644146248	4.31712708839664	0.65614092997968	0.105422087788942	0.357376710326672
Merged-chr7-105736515-4	chr7	105736395	105736595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025897)	promoter-TSS (NM_025897)	89.0	NM_025897	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	8.4992166244216	8.72803662956307	8.69660744633505	8.70852524247934	8.47439402705839	8.33357610242087	8.67368704619707	8.22631712561323	-0.281222305354727	0.0910728794632986	0.329796834093926
Merged-chr12-65036397-4	chr12	65036336	65036536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177806, exon 1 of 14)	5' UTR (NM_177806, exon 1 of 14)	102.0	NM_177806	328110.0	Mm.283339	NM_177806	ENSMUSG00000035597	Prpf39	Srcs1	pre-mRNA processing factor 39	protein-coding	6.89431275240894	7.20576313113361	7.73789742304783	7.02044959474903	7.04302041387183	7.18142199467352	7.00657468766404	7.42357346488652	-0.107694060319205	0.656432065406126	0.856648478879832
Merged-chr7-126791957-3	chr7	126791857	126792057	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019674, intron 2 of 8)	CpG	407.0	NM_001360464	56420.0	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|PP-X|PP4C|Ppx|pp4	protein phosphatase 4, catalytic subunit	protein-coding	5.08210778548314	4.9408031702877	4.65732194689561	4.90842546295297	5.06098156157983	5.40925971624573	5.26825098349376	5.17460116702822	0.610726885328865	0.0523711987627266	0.238376362497258
Merged-chr2-174437879-4	chr2	174437784	174437984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022325, intron 2 of 5)	intron (NM_022325, intron 2 of 5)	1155.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	8.17877484642847	8.13153475542664	8.11201671655229	8.0719821352541	8.47543222935366	8.15544085836689	8.1232641883682	8.11297843516391	0.14214826165001	0.39418483418121	0.693379056693329
Merged-chr19-46991324-4	chr19	46991205	46991405	+	905.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164363, intron 1 of 17)	intron (NM_001164363, intron 1 of 17)	-21738.0	NM_001164365	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	4.2180544503794	4.72461858002353	4.16782060905698	4.55378267843679	4.51136091351422	4.34570183319351	4.54510063650538	4.48514697159331	0.0606956017868572	0.877009615595865	0.953885505336535
Merged-chr3-54316977-3	chr3	54316854	54317054	+	819.68335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253682, intron 10 of 11)	intron (NM_001253682, intron 10 of 11)	-44153.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	3.92629809004858	4.04433031948502	3.82533010419628	3.84620977345878	3.66990518553638	3.89145221115031	4.13085199380469	3.92454407035465	-0.00812158098404664	0.985499314085327	0.99468068720618
Merged-chr14-48459506-2	chr14	48459417	48459617	+	745.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001310584, intron 4 of 16)	intron (NM_001310584, intron 4 of 16)	13165.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	3.24835348357681	3.26924087999005	3.4023123488283	3.39244696717019	2.96151352890892	3.04694290291356	3.12306028745547	3.00725576425117	-1.24001411968728	0.0304373036972875	0.168873695979874
Merged-chr15-76195806-4	chr15	76195719	76195919	+	963.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201394)	promoter-TSS (NM_201394)	-109.0	NM_201394	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	4.81296945295176	4.43273797761347	4.27264883120535	4.76348220950378	4.75084972318637	4.6397540578706	4.5300141478684	4.77618132457751	0.171141059082183	0.645456884662783	0.850934142345746
Merged-chr8-110997771-4	chr8	110997641	110997841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007916)	promoter-TSS (NM_007916)	82.0	NM_007916	13680.0	Mm.287901	NM_007916	ENSMUSG00000015023	Ddx19a	DBP5|Ddx19|Eif4a-rs1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a	protein-coding	6.28343982229988	6.30363762119343	6.42186933840769	6.03416635476138	6.2168222410164	6.10826329441125	5.87651268094802	6.16625502170858	-0.231400159812866	0.339867343399224	0.648946231981688
Merged-chr8-83081259-3	chr8	83081174	83081374	+	919.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 6 of 6)	intron (NM_177378, intron 6 of 6)	-84078.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	3.67895408965884	3.44663152973176	3.57806355311489	3.81821119764094	3.44736587260679	3.63955305092298	3.39707120976707	3.40740417513415	-0.568793075324589	0.259708191117033	0.571563806638815
Merged-chr17-15743535-3	chr17	15743421	15743621	+	858.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007690, intron 17 of 35)	intron (NM_007690, intron 17 of 35)	38554.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	3.79143035054793	3.89252194923243	3.92415817397033	4.12774893563529	3.28343375393817	3.25956815616965	3.20834024639358	3.06653961312479	-2.68038152516714	6.48203494423203e-06	0.000187098444969786
Merged-chr7-39552694-4	chr7	39552635	39552835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	34969.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	8.26399922666293	8.48678428964382	8.51369570315446	8.82264338772807	8.51199360856315	8.56802020578072	8.74164639792594	8.55622108810869	0.0627875695412755	0.721540439330289	0.888783829001335
Merged-chr9-47634939-4	chr9	47634861	47635061	+	947.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	104609.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	4.49238303372806	4.74814276311862	4.33875976800817	4.29892594313967	5.56109444320509	5.30749529865278	5.10923503094786	4.97371671216327	1.58896618199531	5.83852698409282e-06	0.000170319882049485
Merged-chr13-112660683-4	chr13	112660590	112660790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178746)	promoter-TSS (NM_178746)	-76.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	7.60011642458476	7.41260136622339	7.37419818567628	7.81563786460401	7.62161366169399	7.58246422834972	7.88225790862251	7.32688036138765	0.0613668765726173	0.764328105881512	0.907582247573405
Merged-chr5-67830739-2	chr5	67830639	67830839	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	AT_rich|Low_complexity|Low_complexity	16692.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	2.97599643749718	2.94955870826863	2.9763081600244	3.23655859921577	3.47634423203157	3.21310786532913	3.09251277043204	3.21742177909154	0.799816643537443	0.174934118036155	0.469590383048546
Merged-chr17-33992022-4	chr17	33991956	33992156	+	961.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	8277.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	5.18010527149029	5.24294998585585	4.69969766089774	4.55178340430224	5.18816999480534	4.87708824760078	4.71864765299981	4.6966629532827	-0.0964553727389842	0.800360677471965	0.923040237917604
Merged-chr15-99498139-4	chr15	99498028	99498228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028224, exon 12 of 12)	3' UTR (NM_028224, exon 12 of 12)	-23398.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	6.16142585982561	5.81718823281984	5.57732857448169	5.61759336332617	5.97270110401857	5.75480151049787	5.91676361289609	5.65643206071339	0.0559871298652584	0.839057553326819	0.938856878340637
Merged-chr9-7605798-3	chr9	7605699	7605899	+	769.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22432.0	NM_013903	30800.0	Mm.390121	NM_013903	ENSMUSG00000018620	Mmp20	-	matrix metallopeptidase 20 (enamelysin)	protein-coding	3.28827021856262	3.33085433447197	3.51118349198566	3.7747538252298	3.05875347189576	3.40144399347549	3.3355425064118	3.40287402558562	-0.711258266123341	0.205320509777797	0.508859472252119
Merged-chr16-94625912-4	chr16	94625801	94626001	+	991.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	14482.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	4.53188261673155	4.83447181336769	5.00608752893967	4.61799395120178	4.84380274395778	4.57127841444099	4.67612475319489	4.84177845976705	-0.0172873144947236	0.960871315112894	0.986028483619322
Merged-chr5-122649495-3	chr5	122649408	122649608	+	896.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284402)	promoter-TSS (NM_001284402)	-916.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	4.54053770660824	4.17123927158562	4.33630087772942	4.34517756715889	3.53967026450413	3.79208097661406	3.38650660303957	3.39538952298827	-2.4784282473175	1.73444370865259e-06	5.75820749711674e-05
Merged-chr18-3281104-4	chr18	3281000	3281200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311067)	promoter-TSS (NM_001311067)	32.0	NM_001311066	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	7.44619628559311	7.61933766290468	7.28316077266246	7.54031479314063	7.7464575264211	7.47081201712731	7.5386996085747	7.44232562687644	0.104451278585059	0.570249576020631	0.809916884259967
Merged-chr2-52918343-3	chr2	52918243	52918443	+	889.544434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	60475.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	4.33726837095147	4.67781086321341	4.15387451555251	4.37475074011541	3.98614942409949	4.80961864421183	3.60452914660122	4.15134791382131	-0.446554437074645	0.385571728918581	0.686973965429301
Merged-chr4-115737708-4	chr4	115737609	115737809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172698)	promoter-TSS (NM_172698)	-364.0	NM_172698	230648.0	Mm.283565	NM_172698	ENSMUSG00000034210	Efcab14	4732418C07Rik	EF-hand calcium binding domain 14	protein-coding	8.58948249854403	8.83207371389767	8.79442304503921	8.84371779111372	8.88672095073016	8.9307890364247	9.10734863780374	8.87940670865217	0.225750710633822	0.133780252077846	0.407258249372734
Merged-chr1-62736701-4	chr1	62736593	62736793	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	33376.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	5.3263223865172	5.89732121320854	5.45203509397973	4.79168253041247	5.72676599395487	6.00797282908944	5.8683698141668	5.61510052295876	0.661262479205119	0.0517063578514623	0.236362908323758
Merged-chr12-4640992-3	chr12	4640910	4641110	+	832.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001198969, exon 17 of 17)	3' UTR (NM_001198969, exon 17 of 17)	48002.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	3.52570931040543	3.77307715179879	3.46960873656313	3.41431631939036	3.47902930144451	3.58489918166986	3.66665992311693	3.52427022952618	0.0484776263586747	0.921661972264503	0.9709178534782
Merged-chr1-75532408-2	chr1	75532308	75532508	+	805.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_027886, exon 18 of 25)	exon (NM_027886, exon 18 of 25)	10879.0	NM_027886	71728.0	Mm.312650	NM_027886	ENSMUSG00000026213	Stk11ip	1200014D22Rik|BB131189|LIP1|LKB1IP	serine/threonine kinase 11 interacting protein	protein-coding	2.83752655646926	3.03605209677949	2.76685692634895	2.94163759062871	3.13042604048068	3.41566370389326	3.13746256251642	3.14812160199479	1.25708439774511	0.0340983761930761	0.182309646138884
Merged-chr16-36795079-1	chr16	36794979	36795179	+	784.5	f0_balb.idr	intron (NM_134111, intron 5 of 5)	intron (NM_134111, intron 5 of 5)	-10117.0	NM_021301	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	3.46562391375696	3.32496731315258	3.14687302512333	3.33129756572866	3.23568347238292	3.05926833327939	2.94353860635668	3.08353012932791	-0.897896135043894	0.120123371594674	0.38369509364285
Merged-chr2-131430628-4	chr2	131430530	131430730	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61232.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	4.8980420873269	5.31209035654691	4.7111845281494	4.76118949099037	5.10632137805313	4.76230066875195	4.76691392218132	4.39017488292892	-0.299004165124111	0.435850084659271	0.724862103693129
Merged-chr5-43081981-4	chr5	43081866	43082066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-151497.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	5.4527505315527	5.20087219542497	5.2386379968811	6.03011660757127	5.37676321808733	5.24026128821469	5.48126027210131	5.63351830729577	-0.192878396490961	0.567813078964724	0.808331754798167
Merged-chr5-138171996-4	chr5	138171899	138172099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021392)	promoter-TSS (NM_021392)	-22.0	NM_021392	11781.0	Mm.113205	NM_021392	ENSMUSG00000019518	Ap4m1	4930443L05Rik|Ap4m4	adaptor-related protein complex AP-4, mu 1	protein-coding	7.92430254833898	8.14653466155494	7.8745714167507	7.82382599974464	8.07500894005871	8.08138175171431	7.92268340383111	7.94856564361471	0.083843457453516	0.616553704965518	0.835071088022751
Merged-chr11-62675895-4	chr11	62675780	62675980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27216.0	NM_175002	216829.0	Mm.295306	NM_175002	ENSMUSG00000048497	Mmgt2	AI852046	membrane magnesium transporter 2	protein-coding	5.45696830905499	5.32176638049372	5.22628307105492	5.31857240686882	5.33629850099843	5.19728706592693	5.2006780692561	5.25405309417594	-0.1420003869973	0.618170632969559	0.835863676650469
Merged-chr9-106222494-4	chr9	106222367	106222567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031178)	promoter-TSS (NM_031178)	-131.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	6.81310519803945	6.61776763827663	6.6230726968198	7.0293014490785	6.8869556890512	6.7838545073564	6.42030250692893	6.63413183822952	-0.136293418096637	0.549159264046513	0.79787322682874
Merged-chr3-27270324-4	chr3	27270244	27270444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46733.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	7.9236960247186	8.52548083062803	8.09251880160765	7.3835971907224	8.10764817308022	8.40686599833172	7.81317996998852	7.52729107833887	-0.0478682984232107	0.85979960918133	0.947026234961514
Merged-chr13-46930515-4	chr13	46930411	46930611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010617)	promoter-TSS (NM_010617)	-793.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	5.87116583671167	6.01157442024083	6.12112101177699	6.20967568269175	5.98926026095627	6.1455113436992	6.57459459793395	6.28913280882978	0.294183107537093	0.247011525031564	0.558168726560377
Merged-chr1-167350619-2	chr1	167350519	167350719	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019993, intron 1 of 10)	intron (NM_019993, intron 1 of 10)	628.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	4.09270924927023	4.00573651054431	4.18036602646495	4.05771794387192	3.96118339809748	3.96627944185102	3.83072532138584	4.04502826195155	-0.350121195349893	0.403693308526228	0.700922982752502
Merged-chr4-82867307-4	chr4	82867222	82867422	+	892.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7649.0	NM_026647	68268.0	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	4.31508986056912	4.61935283330865	4.60576576040816	4.44183453324226	4.22521471838617	4.57828560900403	4.29693542811222	4.48655962949976	-0.239095009520185	0.52786526589421	0.784584092112251
Merged-chr14-57378307-3	chr14	57378209	57378409	+	761.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030004, intron 2 of 7)	intron (NM_030004, intron 2 of 7)	20174.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	3.50891838582981	3.23430142693167	3.24812873633559	3.44202298972334	3.00714043180283	3.17093937222612	3.23604880625625	3.18719623899914	-0.838262576676552	0.131597190697011	0.403904809478786
Merged-chr14-19777618-4	chr14	19777519	19777719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008695, intron 4 of 20)	intron (NM_008695, intron 4 of 20)	26362.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	6.75387922134277	6.79766511838362	6.87275297056562	6.83010927984822	6.51344285358592	6.30756054891204	6.22451999957701	6.00607869196224	-0.767446119237602	0.000593049962621065	0.00885841371469709
Merged-chr5-140508861-4	chr5	140508759	140508959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	intron (NM_021528, intron 1 of 1)	3250.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	5.97179669822829	6.29534057761923	5.72661871239249	6.0468944676435	6.20645324955841	5.98290456081751	6.02840021554956	6.07573993867874	0.0774030372867158	0.757357990124788	0.904677695365828
Merged-chr5-110387100-4	chr5	110386985	110387185	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028596)	promoter-TSS (NM_028596)	42.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	4.90732786897621	5.19507644901302	5.11617384802947	4.93249782716618	5.09322720481436	5.00769236538506	5.32206306538397	4.94194644324574	0.121483453142134	0.698958633421307	0.878561428415187
Merged-chr10-60341777-4	chr10	60341670	60341870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 37 of 68)	ORR1E|LTR|ERVL-MaLR	-5081.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	5.38917353808914	5.59521955358627	5.23323298013567	5.60112532499178	5.28378328176044	5.67617554518684	5.27223524898369	5.49914015577079	-0.0725820569488391	0.803859721584236	0.924390628495983
Merged-chr4-99182865-3	chr4	99182793	99182993	+	995.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11041.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	3.36250246901532	3.46172352304461	3.59437776192054	3.52976372461089	3.98636245982531	3.65638396187104	3.57994803799303	3.42299329118151	0.620790775780383	0.219442719170079	0.526993886166704
Merged-chr13-63563354-6	chr13	63563259	63563459	+	913.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008957, intron 2 of 23)	CpG	2376.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	3.92821166608128	3.85960978224505	4.02234753530197	4.03901082897542	4.03840929569194	3.58415479608681	3.70443738983473	4.1068171003646	-0.228804628387077	0.620690271943567	0.837426556981465
Merged-chr2-59616664-4	chr2	59616562	59616762	+	928.8624880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	4620.0	NM_198294	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	4.53109736023068	4.26286696128563	4.21063406582876	4.63979914981612	4.55083955453721	4.33868088538605	4.85966878016584	4.75156195356554	0.446130376067722	0.254132965896758	0.565455779292445
Merged-chr1-167246469-4	chr1	167246384	167246584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030724, intron 1 of 6)	L1M4|LINE|L1	38643.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	6.20320557558256	5.63830499258955	5.82998667891957	5.99752735935363	5.67949174834726	5.47609977886691	5.60286891349524	5.48538613986364	-0.601480759155479	0.0278449402042299	0.159489418105487
Merged-chr11-108215020-4	chr11	108214916	108215116	+	889.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	128872.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	4.41593062800904	4.41484506862146	4.32683702266934	4.4124835655902	4.5227317721485	4.82197040960383	4.47979464412033	4.32419910356197	0.344486378528355	0.352433801080051	0.659568292805988
Merged-chr6-29925747-4	chr6	29925659	29925859	+	978.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037740, intron 4 of 20)	intron (NM_001037740, intron 4 of 20)	8746.0	NM_001037740	320609.0	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	5.79160024228138	5.39157798104856	5.39776176026118	5.69105298129087	4.98924300224164	5.24863214542783	5.08126368049004	5.58204516536036	-0.616268389240835	0.0478356265541114	0.225624018454383
Merged-chr1-43447824-4	chr1	43447721	43447921	+	808.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	2070.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	3.82366302282229	3.72284386600498	3.77240613820419	3.63099112788586	3.92007776992505	3.89214164139438	3.90492263037422	3.96566656200159	0.556336437782029	0.201136723072942	0.503376587144427
Merged-chr4-88464789-4	chr4	88464669	88464869	+	922.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25843.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	4.82263508123531	4.42564480281111	4.93253102483893	4.96265135907622	5.20439916001823	5.13925940150451	5.07051256671242	4.65893829223451	0.453793745530663	0.202153363502653	0.50461441050349
Merged-chr17-29614866-4	chr17	29614766	29614966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132314)	promoter-TSS (NR_132314)	77.0	NM_021419	58230.0	Mm.305994	NM_021419	ENSMUSG00000090083	Rnf8	3830404E21Rik|AIP37|laXp180	ring finger protein 8	protein-coding	6.43252835145244	6.52070270741616	6.46776649902078	6.35397701500861	6.45714035747833	6.46388080920026	6.2556343553267	6.64969843214064	0.0358226946642817	0.869170869245075	0.950890741040292
Merged-chr16-33885828-4	chr16	33885737	33885937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	56172.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	4.96492695519568	4.97458974041083	5.49032364678347	5.59991870225615	5.27812675534795	5.10319891019506	5.18237970437962	5.40872163836972	-0.105640828935582	0.751231631830257	0.902050378109251
Merged-chr5-122207913-3	chr5	122207812	122208012	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1817.0	NM_001042489	74096.0	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	3.30367216119715	3.82957334793578	3.67143553579413	2.79023897975296	3.12175667043592	3.35913484881796	3.45931301167447	3.10776476287096	-0.660071365163612	0.309985211719197	0.622129289600201
Merged-chr3-142620652-4	chr3	142620541	142620741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010260)	promoter-TSS (NM_010260)	-22.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	8.50520619580714	8.87092502498064	8.46921646817894	7.60459549022334	8.0335923441623	8.03592912557943	7.78059054781499	7.50783912071189	-0.739087809668411	0.00487759516053846	0.0466956753102847
Merged-chr1-54910970-3	chr1	54910871	54911071	+	697.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	15416.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	3.41643747469036	3.14440972218242	3.09596826374068	3.24654498444158	3.03004658637578	3.1428796371342	2.89154183397494	3.09444085174605	-0.763643674577695	0.187209275785527	0.485484118948476
Merged-chr4-59177748-4	chr4	59177643	59177843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11807.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	7.20958775254638	7.36143158010099	7.51705824105129	7.58612400638722	7.13728340863332	7.27104140280206	7.20775346608892	6.98629288517353	-0.380573666535492	0.0468076199786015	0.22244088546247
Merged-chr11-93955917-4	chr11	93955774	93955974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077529)	promoter-TSS (NM_001077529)	-91.0	NM_001077529	18103.0	Mm.1260	NM_008705	ENSMUSG00000020857	Nme2	NM23-H2|NM23B|nm23-M2	NME/NM23 nucleoside diphosphate kinase 2	protein-coding	6.21772559904422	6.48390808070634	7.13532183719473	6.38750887685529	6.26780307593219	6.70624600762213	6.43030033024112	6.27510973723192	-0.251576250146914	0.361797792636618	0.667091624756031
Merged-chr7-127745940-4	chr7	127745836	127746036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172748)	promoter-TSS (NM_172748)	-839.0	NM_172748	233902.0	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	7.74332058109558	7.59995085243651	7.3578135588255	7.48169003503941	7.86321338806769	7.90604245691062	7.91052705953751	7.9024344138857	0.451063815606156	0.00824392209158515	0.0685553224911143
Merged-chr8-108316380-4	chr8	108316308	108316508	+	954.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	268269.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	4.63439755419425	4.63274030077607	4.67359824305726	4.70408587247642	4.8825538937187	4.50600139633171	4.57437752067121	4.42063290915806	-0.087998216334846	0.806614589708623	0.92545113102243
Merged-chr19-47440234-4	chr19	47440122	47440322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	24189.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	6.0716959215807	5.97835386572756	6.62845013810266	6.84577266763054	5.38425468641041	5.343521342655	5.42242751471062	6.04766379622077	-1.35769846333117	3.28907343604671e-05	0.00078587767070953
Merged-chr4-128727540-4	chr4	128727440	128727640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195083)	promoter-TSS (NM_001195083)	-31.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	6.48172239471464	6.46061587099836	5.82287639246823	5.92642644754419	6.32427219222423	6.4869375227299	6.69538377725684	6.21084789605584	0.360175461752413	0.182197806817643	0.47878218634963
Merged-chr17-71214755-3	chr17	71214645	71214845	+	863.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164885, intron 1 of 19)	intron (NM_001164885, intron 1 of 19)	10091.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.62970248506818	3.44089457747967	3.35412750481215	3.08667738722539	3.64758664498248	3.69783651654886	3.40131323790532	3.57742233181575	0.692824508516596	0.188425506779713	0.486992724783917
Merged-chr5-85915199-4	chr5	85915074	85915274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150409.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	7.61680768869113	7.27039829253259	7.25969567752395	7.63443305653747	7.09550229805528	6.9026426496706	7.05317890045169	6.95563379342942	-0.619858964503142	0.00180344822660876	0.0215635211358617
Merged-chr12-72976880-2	chr12	72976780	72976980	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36998.0	NM_011384	20476.0	Mm.57138	NM_011384	ENSMUSG00000021099	Six6	Optx2|Six9	sine oculis-related homeobox 6	protein-coding	3.16558136866192	3.17511379966826	3.0321836552084	3.45806458327262	3.25050129638905	3.34001937705891	3.53323292167189	3.49872046317742	0.619742369610237	0.272997410633546	0.584411509518352
Merged-chr12-4717583-1	chr12	4717483	4717683	+	621.0	f0_balb.idr	intron (NM_029107, intron 7 of 7)	intron (NM_029107, intron 7 of 7)	20800.0	NM_029107	74855.0	Mm.269534	NM_029107	ENSMUSG00000079177	Fam228a	4930417G10Rik	family with sequence similarity 228, member A	protein-coding	3.11523006028042	3.00196114479878	3.17058831021729	3.07967815219814	2.66458126538293	3.04417878258914	3.04668011940794	2.93384952922057	-0.72149157249486	0.241344874072357	0.551890217226083
Merged-chr9-64021054-5	chr9	64020850	64021050	+	925.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008542, exon 1 of 4)	exon (NM_008542, exon 1 of 4)	1109.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	3.15182703085862	3.17286382888841	3.39460702728578	3.41627173799572	3.6423010743444	3.45109678076471	3.26743585806671	3.49864564847199	0.617044240336624	0.247719321911795	0.558890166868946
Merged-chr9-92457927-3	chr9	92457847	92458047	+	988.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178711, intron 1 of 8)	CpG	569.0	NM_178711	235527.0	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding	3.92014611439277	4.08659923603188	4.27351806092476	4.3482515668004	3.60975141810978	3.93601166271447	3.85323043572065	3.75667070676273	-1.09719098219165	0.0157643450175045	0.108624425363113
Merged-chr5-31602597-4	chr5	31602513	31602713	+	972.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11338.0	NM_025796	66845.0	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	5.98882308462047	6.2121934889613	6.20066201405731	6.27777022516407	4.79527528569206	5.56972490751851	5.78096784273363	5.6263533217719	-1.13970568350564	0.000293866110165009	0.00498619686661148
Merged-chr8-39619980-4	chr8	39619862	39620062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_031195, exon 5 of 9)	exon (NM_031195, exon 5 of 9)	22716.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	6.85119160793861	6.91298427101898	6.67549566273487	7.31604842806356	6.90446678116224	6.82110322994686	7.03110222142696	6.65482855442774	-0.164545287239211	0.474325455348804	0.75165330690546
Merged-chr13-37121749-3	chr13	37121666	37121866	+	877.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71522.0	NM_001166391	74145.0	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	3.93049851340512	3.80117140871501	3.74822800048249	3.90474754449373	3.26416670341627	3.59144294120531	3.5213183300383	3.4115257766805	-1.33728734909737	0.00764695888316932	0.0650690838428104
Merged-chr9-35559501-4	chr9	35559400	35559600	+	850.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023292, exon 2 of 5)	5' UTR (NM_023292, exon 2 of 5)	940.0	NM_023292	67049.0	Mm.425574	NM_023292	ENSMUSG00000032103	Pus3	2610020J05Rik|5730412F04Rik	pseudouridine synthase 3	protein-coding	4.29625859978663	4.25978139318735	4.11677066122116	4.47231892907534	4.1400391942111	4.2415396740708	4.27743372075706	3.78728758559563	-0.446918174438272	0.290400599368627	0.602566005785318
Merged-chr1-33739434-4	chr1	33739321	33739521	+	809.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008999, exon 8 of 8)	3' UTR (NM_008999, exon 8 of 8)	18329.0	NM_145392	213539.0	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	3.70149534995033	3.92419819498321	4.05416782472707	3.825798927935	3.83141210426475	3.76206682013755	3.6879576814827	4.32639380392063	0.130315326826005	0.782494766071097	0.91529005173258
Merged-chr4-156033681-4	chr4	156033634	156033834	+	935.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7412.0	NM_021985	21936.0	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	3.74036012225957	3.75340700907521	4.00516280948623	3.50700476792633	4.06678901745712	4.02979028287808	4.03394852527594	4.47530838551239	1.14135994190286	0.0118353751076597	0.0889953691937573
Merged-chr16-52089616-2	chr16	52089516	52089716	+	595.25	f0_balb.idr|f0_c57.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	58067.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	3.89859223274374	3.74544436228825	4.27926349146126	3.6657401244681	4.03543944099146	3.97085176840549	3.83283816666666	3.49766234350749	-0.157438579661833	0.751567973367371	0.902195066080063
Merged-chr17-50025792-3	chr17	50025709	50025909	+	961.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 7 of 9)	ORR1G|LTR|ERVL-MaLR	164688.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	3.87612786399859	3.35114428020765	3.78563778856024	3.68736932250734	3.74635227823169	3.75321909856497	3.45283311421446	3.40165939613732	-0.261366806779237	0.611131355729162	0.832196031632187
Merged-chr4-140952450-4	chr4	140952327	140952527	+	962.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008812, exon 16 of 16)	3' UTR (NM_008812, exon 16 of 16)	5475.0	NR_045911	100126227.0	Mm.404073	NR_045911	ENSMUSG00000087698	Gm13031	-	predicted gene 13031	ncRNA	4.59388975275156	4.6493686743546	4.35682956346375	4.32644761946986	5.18815067346899	5.00660989299914	4.97735716481165	5.14792095522877	1.25993238447919	0.000156620187023029	0.00295794225345569
Merged-chr6-123229822-4	chr6	123229718	123229918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020001)	promoter-TSS (NM_020001)	-25.0	NM_001190320	56620.0	Mm.271782	NM_020001	ENSMUSG00000023349	Clec4n	Clec6a|Clecsf10|Nkcl	C-type lectin domain family 4, member n	protein-coding	6.00523010685261	5.78068024798949	5.64679951024452	6.16417991701634	5.78625596294849	5.92816704991435	6.13117563859307	5.79828510483601	-0.0274081861558252	0.918596987966412	0.970054173425813
Merged-chr10-24040321-2	chr10	24040221	24040421	+	720.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2707.0	NM_001010835	276742.0	Mm.377870	NM_001010835	ENSMUSG00000100689	Taar7e	Gm697|taR-7e	trace amine-associated receptor 7E	protein-coding	2.97558270178678	2.87730739079678	3.30247325775734	2.81709365643766	2.84527997327578	2.95449197250435	2.96522758160168	3.09261724980472	-0.143271141259068	0.815480853405114	0.928796090319587
Merged-chr1-180313077-4	chr1	180312972	180313172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17404.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	7.24567246634771	7.55397350128392	7.02004297215314	6.69544274276642	7.64225588974968	7.83839699350681	7.23219623361737	7.13951045005968	0.450045888451596	0.0799398311054408	0.306228794911693
Merged-chr9-69125459-3	chr9	69125368	69125568	+	623.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	-164373.0	NM_001289916	19883.0	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	2.44568939003909	2.41296055436836	2.50597324947906	2.64494024392493	2.10714903043501	2.27335906879714	2.09225743754839	2.17296464573729	-2.54402770487412	0.00439284998866604	0.0431280923232083
Merged-chr3-78958976-4	chr3	78958887	78959087	+	809.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	185900.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	4.29301209485831	4.24320456049188	3.92547463898198	3.67740746152851	4.39172231244928	4.29444578311462	3.90940122858973	3.75351542167239	0.176062784635179	0.715792803460592	0.886371813543908
Merged-chr9-58247290-4	chr9	58247226	58247426	+	933.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001311088, exon 2 of 9)	exon (NM_001311088, exon 2 of 9)	2460.0	NM_008884	18854.0	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	4.29763838704871	4.42200549112371	4.47367984844225	3.93951111146526	4.53755619561037	4.47432327154651	4.41166394859385	4.79396195259722	0.651682643983475	0.101838023746314	0.350247810796235
Merged-chr1-160212976-4	chr1	160212888	160213088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009786)	promoter-TSS (NM_009786)	-96.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	9.31953053050967	9.37062653890336	9.34346488871907	9.19934824924381	9.2841247554235	9.42886726352997	9.42514070962079	8.9963063494551	-0.0160791359449177	0.918235372276217	0.969889091028279
Merged-chr5-108694854-4	chr5	108694730	108694930	+	866.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054071, intron 1 of 6)	CpG	601.0	NM_054071	116701.0	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	3.61130395955154	3.95026821827947	4.16448811605887	3.91647414185422	4.17642495879973	3.90708743947972	3.87641484830821	3.83875679037052	0.11251309993631	0.805454980108875	0.925178802433024
Merged-chr3-61416694-4	chr3	61416597	61416797	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52190.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	5.03100569873718	4.97452999378993	5.270493816391	5.02759410372572	4.95027519990272	4.69460823333675	4.79500998714333	4.96100717712766	-0.423078202546335	0.189696280397032	0.488668218391674
Merged-chr17-48270025-4	chr17	48269929	48270129	+	942.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033922, intron 4 of 5)	intron (NM_001033922, intron 4 of 5)	5734.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	5.04596909043957	5.07850682286887	5.11394540414935	5.38487363058034	5.03970539309014	5.03902503694582	5.12105840480532	5.1741503419705	-0.168752885583708	0.584408956474863	0.817596016641525
Merged-chr17-34924580-6	chr17	34924475	34924675	+	991.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023557, intron 13 of 20)	intron (NM_023557, intron 13 of 20)	-6678.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	4.97959140500567	4.81657722508232	4.43875233249382	4.61354249374888	5.21796203106475	5.08495074497495	4.88665075904041	5.38092881979813	0.860880520731738	0.0113024634059764	0.0860793968300868
Merged-chr14-75180802-4	chr14	75180647	75180847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	44322.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	5.81160824045799	6.16191795066284	5.9302933755867	5.53287242675652	6.05395506839034	5.98884279474028	5.92216861411446	6.05403625025132	0.228521820488732	0.390244142406758	0.690442390504105
Merged-chr11-60305788-3	chr11	60305681	60305881	+	893.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359810, intron 1 of 12)	intron (NM_001359810, intron 1 of 12)	47124.0	NM_153080	216810.0	Mm.218875	NM_153080	ENSMUSG00000000538	Tom1l2	2900016I08Rik|A730055F12Rik|AU042072|Srebf1	target of myb1-like 2 (chicken)	protein-coding	3.66116096720671	3.51908343419884	3.50651891451722	3.57875482107428	3.67568281669125	3.23709105186115	3.37964360615472	3.65952465706174	-0.189749058571	0.711879587951648	0.884679048655813
Merged-chr13-80899892-4	chr13	80899788	80899988	+	673.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13793.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	3.46224122479409	3.23742291735973	3.61927066154426	3.41411907803946	3.45028163847637	3.33165769034616	3.60376103810459	3.61710140017546	0.232253963141754	0.648500678684626	0.852235470858206
Merged-chr10-98776840-4	chr10	98776763	98776963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-137779.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	5.99044831171172	6.08242682420596	6.36831658022906	6.56295485781141	6.31264729258994	6.14565616018404	6.21028881093625	6.03259167663236	-0.158149537554714	0.53265148289959	0.788200754532765
Merged-chr2-5771077-4	chr2	5770969	5771169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56307.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	6.7502276904005	7.07132149096205	7.05417432804973	6.76878645310729	7.23487894000578	7.44374084490344	7.1997615920679	7.27252661787185	0.514828380992628	0.00862062332627306	0.0708778973349093
Merged-chr7-64141511-4	chr7	64141399	64141599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12336.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	7.41897835064173	7.39763382432447	7.6642784611264	7.27500336104088	7.39174893031732	7.3423992376042	7.08114124087976	7.38591091616041	-0.173383778491173	0.366168331977198	0.670754193628045
Merged-chr14-74946837-4	chr14	74946719	74946919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	1058.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	5.24605412680887	5.13646579864396	5.48945676901474	5.002551528233	5.0124691866208	5.19496740133979	5.03013616521937	5.01613751823001	-0.289471616136213	0.357757904487708	0.663866486000028
Merged-chr11-79398571-3	chr11	79398465	79398665	+	846.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 5 of 57)	Lx8|LINE|L1	58673.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	4.11148089247787	4.12369094931017	3.75763528019668	3.69740853071238	3.85448269502743	4.40607935219505	4.0934159907665	3.75561719504232	0.31331485518492	0.50746455499179	0.772786623302039
Merged-chr2-101762640-4	chr2	101762547	101762747	+	775.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 3 of 8)	intron (NM_001355625, intron 3 of 8)	35060.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	4.00156651786419	4.24547549778551	4.00214913928367	4.15205865020948	4.01271911646492	3.96866213406422	3.83337499370849	3.9506027422899	-0.443110469981404	0.295331419355329	0.607364100260525
Merged-chr13-24501663-5	chr13	24501576	24501776	+	907.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80513.0	NM_001286100	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	3.97135806356495	3.85857645731483	3.97194469958116	3.82537618896472	4.03347283081605	4.28050247513797	3.6258744068998	4.23412385275802	0.438734134811031	0.330433122294698	0.641809469479239
Merged-chr15-83009743-4	chr15	83009625	83009825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028728, intron 4 of 5)	intron (NM_028728, intron 4 of 5)	13413.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	8.0253818499095	8.02249905116449	7.82926113211601	7.95470682783374	7.8036610393906	8.08775626035703	7.76846202373795	7.79309381200437	-0.12253629221082	0.467848739376833	0.747178653775127
Merged-chr3-79528145-4	chr3	79528042	79528242	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	39537.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	4.06438345230338	3.8163782050636	4.28711984931024	4.51227500048696	4.36641488952865	3.79198886205106	3.94809381048856	4.15597868121478	-0.289632637986427	0.542249670364818	0.793699012665228
Merged-chr10-24641574-4	chr10	24641480	24641680	+	983.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008813, exon 25 of 25)	3' UTR (NM_008813, exon 25 of 25)	46138.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	4.75352907208191	4.61597769379595	4.99339638376274	4.83211050305355	4.84296306686699	4.59011915129936	4.80468555635236	4.75118285080972	-0.101348160688048	0.764906034331614	0.907904992957743
Merged-chr4-118360046-4	chr4	118359926	118360126	+	955.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026601)	promoter-TSS (NM_026601)	27.0	NR_003946	68180.0	Mm.193212	NM_026601	ENSMUSG00000006395	Hyi	2700033B16Rik|6430559E15Rik|HT036	hydroxypyruvate isomerase (putative)	protein-coding	4.60347768136229	4.59626726559615	4.84670092294131	4.5472142078867	4.30571790901834	4.33190177400484	4.18653983205691	4.63879588446474	-0.620824449974981	0.101790928977536	0.350149062993244
Merged-chr16-33996318-4	chr16	33996224	33996424	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 51 of 59)	intron (NM_177357, intron 51 of 59)	-29286.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	4.19752613834192	4.72779694621985	4.29784431797129	4.49115328544824	4.7011611257455	4.37667517653585	4.61220717924977	4.55507029119001	0.269372500187552	0.480845792831819	0.756163685244129
Merged-chr5-3300930-4	chr5	3300825	3301025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42968.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	5.52552698639655	5.71538082422424	5.78583587665049	6.303280513995	5.4503848955807	5.61519773358024	5.37915456823495	5.73396325829147	-0.567038723743638	0.0634058351220856	0.267256702679868
Merged-chr9-108490691-4	chr9	108490571	108490771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168371)	promoter-TSS (NM_001168371)	-5.0	NM_001168372	71472.0	Mm.289706	NM_027804	ENSMUSG00000006676	Usp19	8430421I07Rik|AI047774|Zmynd9	ubiquitin specific peptidase 19	protein-coding	7.05870025662188	6.94449868109867	6.32445460949259	6.64606068347668	7.09819410739858	7.03563544391395	6.97719461779858	6.89433081818031	0.329488897532717	0.147456610401513	0.428575503134721
Merged-chr7-30472554-2	chr7	30472457	30472657	+	639.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019459, intron 20 of 29)	B3|SINE|B2	-6966.0	NR_004443	445267.0	Mm.398140	NR_004443	ENSMUSG00000087009	Nphs1os	Nphs1as	nephrosis 1 homolog, nephrin, opposite strand	ncRNA	2.92732267795459	2.76457702938976	2.81482969836562	2.65510203520521	2.48091256581107	2.73002232219797	2.61625057590912	2.6232017861667	-0.908622744300846	0.17633554102408	0.471307205534908
Merged-chr2-142699490-4	chr2	142699384	142699584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 23 of 26)	intron (NM_001355123, intron 23 of 26)	201980.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	5.02654189684017	5.11882458614467	5.09653699249564	4.99312178892816	5.29341242095846	5.36663921530209	4.96749745997344	5.3911840054996	0.393946954279556	0.191204658830099	0.490618471913036
Merged-chr19-45574067-3	chr19	45573934	45574134	+	977.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172639, intron 4 of 5)	intron (NM_172639, intron 4 of 5)	13449.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	3.9730204700694	4.1417376127663	3.71526223753628	3.83104284574235	4.14130038406909	3.71316875676068	3.80952999256699	3.92360309539303	-0.0145347760811466	0.9747822842157	0.990966385645806
Merged-chr2-119476983-7	chr2	119476876	119477076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026574, intron 1 of 35)	CpG	653.0	NM_026574	68142.0	Mm.330496	NM_026574	ENSMUSG00000034154	Ino80	2310079N15Rik|4632409L19Rik|Inoc1	INO80 complex subunit	protein-coding	4.73457463934465	4.87331330027285	5.25683239568495	4.83316184091974	4.98615723248269	5.07264735844571	5.1725586607804	5.41322044709598	0.451620097112673	0.16951108753765	0.462161476887795
Merged-chr18-73762531-4	chr18	73762429	73762629	+	709.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8050.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	4.2841775068393	4.02623163530169	3.948737782911	4.1817384789264	3.97375158073139	4.22882699962576	4.34621096972753	4.44045122128962	0.329267687184229	0.429703245091774	0.7205774241418
Merged-chr17-33823576-2	chr17	33823476	33823676	+	919.1666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_103515)	promoter-TSS (NR_103515)	986.0	NM_016844	54127.0	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	2.66748326542226	2.45888775819781	2.44936070865695	2.28842777548501	2.82347287276027	2.90774317395578	2.7231799071231	3.06840654118376	2.21267280465962	0.00134829866717989	0.0171467841399316
Merged-chr7-27725846-4	chr7	27725821	27726021	+	772.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-5488.0	NM_029531	22718.0	Mm.66913	NM_009560	ENSMUSG00000037640	Zfp60	6330516O17Rik|AI426106|AI449354|Mfg-3|Mfg3	zinc finger protein 60	protein-coding	3.43775638005457	3.40840409992175	3.64713011391521	3.19707378915286	3.11959909333496	3.61159393779615	3.30769870048469	3.73753471695039	0.125667791581004	0.821701722360243	0.931839131812928
Merged-chr17-17865373-4	chr17	17865275	17865475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10187.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	7.42041066328103	7.24934253178325	7.18556994726281	7.19774522675328	7.33205517815379	7.12779517799884	7.18290041325165	7.16919536436621	-0.0685506668470046	0.708456715538078	0.882891668801822
Merged-chr6-125332969-4	chr6	125332842	125333042	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011324, intron 3 of 11)	intron (NM_011324, intron 3 of 11)	11602.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	4.75420266349553	4.82223085352997	4.94757464701013	4.68316321422872	5.33878019484142	5.19061526358623	5.20832853366846	5.04720388722634	0.804135238803149	0.00947667814115652	0.0759468896072973
Merged-chr17-12768869-7	chr17	12768706	12768906	+	839.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	900.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	2.67097973654324	2.66364567133469	2.74113664340048	2.71308397307249	3.09075885871852	3.09915008692524	2.91990869805937	2.86938071715639	1.35473663187018	0.0264901826008259	0.15440097505275
Merged-chr16-22445065-4	chr16	22444956	22445156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger15a|DNA|TcMar-Tigger	-5486.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	6.34580395190404	6.29229336265754	6.55743879523183	6.7082716134943	6.59566428603	6.48593509387381	6.64637099286461	6.93860347720341	0.255407871732396	0.269546046075385	0.581238507864386
Merged-chr10-19009566-4	chr10	19009465	19009665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166402, intron 1 of 7)	intron (NM_001166402, intron 1 of 7)	2398.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	8.63759793422957	8.80345226903538	8.1946249910486	7.88662419807846	8.61190865504417	8.65471065624248	8.40744938487511	8.24385207530501	0.0801419590862894	0.724247195455374	0.890108631350396
Merged-chr10-79766700-2	chr10	79766600	79766800	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027505, intron 1 of 7)	CpG	252.0	NM_144528	70294.0	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	4.10042676908374	4.43718289690519	4.04787269385485	4.30996411709051	4.54499062556524	4.46668420945901	4.48003882640206	4.29173134772313	0.493829728052561	0.205327516105454	0.508859472252119
Merged-chr15-6304010-4	chr15	6303911	6304111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	4222.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	6.53222828559449	6.62418389856832	6.66956706045968	6.60291038647746	6.23896077736964	6.55684842784536	6.2154512509866	6.16011070570801	-0.460093099534803	0.0356019521870971	0.187364980016664
Merged-chr10-49151711-3	chr10	49151616	49151816	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358866, intron 14 of 16)	ERVB4_3-LTR_MM|LTR|ERVK	636221.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	5.86376230816383	6.46506397634406	6.37199380167729	6.06610099364	3.88534888447838	4.14435898449887	4.12345038809514	4.27145372234511	-4.7812245477003	2.41952044263796e-23	1.27569663397428e-20
Merged-chr5-66125095-3	chr5	66125010	66125210	+	861.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	ID4|SINE|ID	25868.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	3.82388881934274	3.58213176329278	3.49816653579939	3.66380156313178	3.40334791824998	3.17025273538818	3.12284133517646	3.26391795272594	-1.39881096420659	0.0114488340606072	0.0869337059526307
Merged-chr18-39249201-4	chr18	39249090	39249290	+	839.037476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 17 of 21)	intron (NM_001361073, intron 17 of 21)	238055.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.54933837056834	4.14253874259597	4.10388947052292	4.14365684324513	4.07947596003939	4.01616112789017	4.34625479027641	4.0519836790958	-0.280625624515205	0.503683572341515	0.770507049123075
Merged-chr6-129462198-4	chr6	129462110	129462310	+	971.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_132130, exon 6 of 6)	non-coding (NR_132130, exon 6 of 6)	-10210.0	NM_175526	243653.0	Mm.131289	NM_175526	ENSMUSG00000033082	Clec1a	5930406N14Rik	C-type lectin domain family 1, member a	protein-coding	5.3359869686762	4.8799370152292	5.08281560467864	5.17126622367388	4.86866785345195	4.58038463968284	4.701293228235	4.87603604401906	-0.714187041205124	0.0330565137882457	0.178387383997994
Merged-chr15-89149677-4	chr15	89149561	89149761	+	885.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011161)	promoter-TSS (NM_011161)	-55.0	NM_011161	19094.0	Mm.91969	NM_011161	ENSMUSG00000053137	Mapk11	P38b|Prkm11|Sapk2|Sapk2b|p38-2|p38beta|p38beta2	mitogen-activated protein kinase 11	protein-coding	4.27950705016983	4.78343004546403	4.46553693623	4.46325555697822	4.8565183786539	4.50563889787549	4.56764999175343	4.46273217692004	0.23559478935297	0.532861407541263	0.788341744208804
Merged-chr4-63683273-4	chr4	63683177	63683377	+	921.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48856.0	NR_151544	102632940.0	Mm.399154	NR_151544	ENSMUSG00000086817	Gm11482	-	predicted gene 11482	ncRNA	4.89902487794212	4.67699458565597	4.93181247348628	5.02975843766138	4.30306364487429	4.12913979942014	4.70404229290348	4.56573273743452	-0.989157652412285	0.00881864722514482	0.0720917067691034
Merged-chr13-95019541-4	chr13	95019423	95019623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172590, intron 12 of 12)	intron (NM_172590, intron 12 of 12)	43179.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	5.48640562587759	5.09725994195773	5.40177282866298	5.87421871711163	5.47696457123975	5.422095697956	5.48692470895693	5.51076957031764	-0.075063462777744	0.809539674695681	0.926491695423415
Merged-chr17-71300078-4	chr17	71299971	71300171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	10940.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	7.54716351884229	7.53146020392943	7.55721710379442	7.54688976586047	7.07562480461889	7.39555915014139	7.57953707422271	7.26894162249083	-0.280924100230436	0.135788421366147	0.410206435974067
Merged-chr2-30133739-4	chr2	30133629	30133829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146252)	promoter-TSS (NM_146252)	-17.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	8.10746543290033	7.96264389812293	7.53097967470953	7.63882677799714	7.94247174998501	8.15143217575435	7.89441270147785	7.84020548316873	0.1745174255196	0.371913191979645	0.675931720312192
Merged-chr17-4969871-3	chr17	4969755	4969955	+	890.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25219.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	3.89170397283042	4.08992796939074	4.65954395315415	4.13704884253741	3.95106150772959	4.07032431411992	4.16897847761644	3.77495276148516	-0.580856223719038	0.207258580974259	0.511181071672855
Merged-chr16-97444059-4	chr16	97443957	97444157	+	937.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18848.0	NM_010846	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	4.22832343080462	4.33312917299431	4.1795624837269	4.28271171524364	4.84122950725178	4.66157637738988	4.1619886103326	4.36405728533549	0.65691848279478	0.100959260417913	0.348744146510806
Merged-chr1-191071126-5	chr1	191071045	191071245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 3 of 5)	intron (NM_198654, intron 3 of 5)	8124.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	4.5259167814457	5.09754561169415	4.39415215291435	4.56026822265455	4.48027726545291	4.61552725085303	4.32805089357884	4.64369265601144	-0.339411388044174	0.385906984844141	0.687298864016961
Merged-chr10-27366223-3	chr10	27366128	27366328	+	943.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008481, intron 5 of 63)	intron (NM_008481, intron 5 of 63)	-23638.0	NR_131034	75855.0	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA	3.75218645313525	3.92351653083328	4.36921280065014	4.69565571839383	2.93523854248121	3.13035104385566	3.16453305160497	3.17295772773502	-5.14197706285066	4.76030028561697e-08	2.18980677806283e-06
Merged-chr16-57246769-4	chr16	57246664	57246864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15298.0	NM_001358433	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	5.74299209053958	6.1423600022643	5.91138359870327	6.18189114785982	5.74393696278899	5.63898779152925	5.63740963300819	6.07437399419435	-0.378870091303907	0.158373477968602	0.445212020688081
Merged-chr5-92092745-2	chr5	92092645	92092845	+	956.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-9001.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	2.91571587397264	2.97073161914385	3.29066797661629	2.61739077850136	3.05197515998598	2.74745610572629	2.77680706832728	2.85101801721344	-0.43117653187662	0.521642156284058	0.781517826530151
Merged-chr11-17170135-3	chr11	17170058	17170258	+	931.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 1 of 5)	intron (NM_024459, intron 1 of 5)	10860.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	3.67045446914795	3.33872284265696	3.51431145771007	3.95917976321901	3.23390902469223	3.31514061702839	3.6058029711864	3.66880055514612	-0.604615978390292	0.27434337653455	0.586094219291456
Merged-chr4-53124853-4	chr4	53124744	53124944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	L3|LINE|CR1	35051.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	7.43811557913461	7.18205190318337	7.1077204667893	7.17361730717895	6.88138178465853	7.28479257980294	7.49004507725392	6.73309414862762	-0.137113870462385	0.551767990995142	0.799073691139046
Merged-chr3-13551437-1	chr3	13551337	13551537	+	946.0	f0_balb.idr	intron (NM_001357034, intron 1 of 7)	intron (NM_001357034, intron 1 of 7)	78638.0	NM_001357036	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	3.21531629934585	3.11228807627795	3.53425025376784	3.51797666220674	3.32847676536689	3.1295204308548	3.20445397202914	3.27296049883308	-0.455168096544156	0.416553196008412	0.710584286504404
Merged-chr8-71286488-4	chr8	71286390	71286590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	intron (NM_001142322, intron 1 of 39)	13776.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	7.4956445746581	7.34542434899455	7.51402876636301	6.7782132364598	6.8558844543965	7.09296129500349	6.80998545898438	7.00274416136973	-0.494898606787102	0.0351739104879204	0.185881934413816
Merged-chr3-87322780-2	chr3	87322669	87322869	+	662.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	RLTR12B|LTR|ERVK	-35112.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	3.63859574522636	3.90328893743362	3.45198782013574	3.43345447419452	4.01582805876029	3.97579863024909	3.97583530015397	3.99150221721421	1.09945843496701	0.0175723633902238	0.117220707327162
Merged-chr12-69448070-4	chr12	69447975	69448175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27475.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	7.08786763460033	7.44248508251317	7.67408983397424	7.88196574841425	7.34732476382545	7.56810704675821	7.21830966820263	7.0325807154621	-0.345525244142408	0.135518533436056	0.409808551765019
Merged-chr13-34667402-4	chr13	34667301	34667501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105041)	TTS (NR_105041)	14478.0	NR_105041	101056149.0	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	-	predicted gene 15908	ncRNA	5.82221915998283	5.68884412095892	5.60213657910691	5.84409807140773	5.52743328972222	5.44614725159987	5.74799690002027	5.67621815708675	-0.247659484228576	0.34678288283989	0.654947432011795
Merged-chr3-87617525-4	chr3	87617401	87617601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003912)	promoter-TSS (NM_001003912)	-58.0	NM_001360197	213498.0	Mm.287267	NM_001003912	ENSMUSG00000041977	Arhgef11	PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding	5.62207032788642	5.65072404095807	5.2490798514644	5.40664539922572	5.98903453366252	6.10748292516147	6.29650046946331	5.44561491380867	0.829799450547135	0.0051439494319579	0.0485083699810985
Merged-chr18-65501558-1	chr18	65501458	65501658	+	727.666687	f0_balb.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	70561.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	3.72722230418447	3.76728153210537	3.72786026609109	3.42883483639359	2.83829831332912	2.87875166327503	2.92136676140583	3.00354489832231	-3.50959149738583	2.91497864931849e-06	9.20112041152289e-05
Merged-chr17-34743939-2	chr17	34743839	34744039	+	773.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009780)	promoter-TSS (NM_009780)	-42.0	NM_009780	12268.0	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	2.86883916928537	2.72506698221879	3.00945977177086	2.68292567543833	3.42173920941405	3.25209316774505	3.48761335099227	3.40763402730633	2.41734310189051	3.54054681800849e-05	0.000836139953414155
Merged-chr9-72958795-4	chr9	72958690	72958890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026314)	promoter-TSS (NM_026314)	5.0	NM_001163725	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	6.45055842400313	6.35736052621069	6.30512092236316	6.23060056510131	6.59693140246398	6.67856729300151	6.85087540543473	6.56261220401389	0.504666933027972	0.017601196506125	0.117350652501824
Merged-chr8-119828285-2	chr8	119828185	119828385	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	(A)n|Simple_repeat|Simple_repeat	12294.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	3.32245338211723	3.23915167147826	3.21772995524852	3.09266447638776	3.1642885061801	3.08315632925992	3.03060719210882	2.97476011759686	-0.582676283182419	0.305953929275801	0.618432859996656
Merged-chr2-118896433-4	chr2	118896380	118896580	+	873.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5135.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	3.55544884640218	3.37590587292951	3.32289970762455	3.6753726032016	3.22170656808228	3.61767076902159	3.69044689339295	3.70446353545729	0.220868917448325	0.677953182373941	0.867961033296666
Merged-chr7-127406667-7	chr7	127406515	127406715	+	982.214294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001167832, exon 1 of 3)	5' UTR (NM_001167832, exon 1 of 3)	207.0	NM_146203	233893.0	Mm.297097	NM_146203	ENSMUSG00000045757	Zfp764	8030466O12Rik	zinc finger protein 764	protein-coding	4.31462532191125	4.27052917389183	4.04175456436617	3.82909709148325	4.35511658043818	3.94393071030038	4.02483576569282	4.50221694245606	0.287532448827177	0.516509257233009	0.778268219492121
Merged-chr7-43782702-4	chr7	43782624	43782824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133712, intron 2 of 5)	intron (NM_133712, intron 2 of 5)	1670.0	NM_133712	69540.0	Mm.46421	NM_133712	ENSMUSG00000030693	Klk10	2300002A13Rik|NES1|PRSSL1	kallikrein related-peptidase 10	protein-coding	5.92580051200603	5.90836877251734	5.90457093263824	5.91736340423791	5.59834789264493	5.80687489563147	6.11724559496107	5.75789171051748	-0.142297259319021	0.579291317962471	0.815292704330909
Merged-chr6-112696671-4	chr6	112696565	112696765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021385)	promoter-TSS (NM_021385)	5.0	NM_021385	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	5.58796180441101	6.08266823785057	5.87800544890211	5.94677091155117	6.53824276001198	5.95495535991756	6.04652298391562	6.24522935732309	0.529452581068791	0.048392462978289	0.227114500553411
Merged-chr10-19596798-4	chr10	19596670	19596870	+	900.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010511, intron 1 of 6)	MTEb|LTR|ERVL-MaLR	4821.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	4.45554243742463	4.33888976296302	4.32854914525255	4.42226332049138	4.52070517035911	4.41041690497724	4.11902864812467	4.53177439965088	0.0503329811300727	0.894640601986986	0.960655379918931
Merged-chr7-28371687-5	chr7	28371642	28371842	+	824.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290542, exon 1 of 19)	5' UTR (NM_001290542, exon 1 of 19)	920.0	NM_138752	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	3.69824247724353	3.9067164424039	3.80632638855885	3.5237646875115	3.60241906927974	4.25080533960146	3.68409563365066	3.95015882999137	0.450036899616026	0.356882307967559	0.663204275532246
Merged-chr18-84088170-4	chr18	84088046	84088246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146090)	promoter-TSS (NM_146090)	-12.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	6.91242307027296	6.82331584378054	7.05330224376226	7.4894571807942	6.6947673212163	6.90363033629767	7.14289330748958	7.07211960952013	-0.21027263789549	0.375614404926475	0.678579934364767
Merged-chr11-97151113-2	chr11	97151013	97151213	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1401.0	NM_198100	73174.0	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	3.22379876192795	3.10274903228973	2.78274851528607	2.96458689490868	3.11888393394827	3.09933174511689	3.15713742211892	3.16788327531368	0.44333597677969	0.44392451180751	0.730406204802171
Merged-chr15-3232757-4	chr15	3232658	3232858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38009.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	5.56947667556533	4.87683438077382	5.38857981270711	6.01015595855819	5.04062689150854	4.79469581365592	5.04820292668621	5.29807362713647	-0.872155202044256	0.0192050357333864	0.124454151545202
Merged-chr11-69902155-1	chr11	69902055	69902255	+	805.0	f0_balb.idr	exon (NM_001291119, exon 1 of 28)	exon (NM_001291119, exon 1 of 28)	339.0	NM_001013414	216860.0	Mm.268347	NM_001013414	ENSMUSG00000047284	Neurl4	-	neuralized E3 ubiquitin protein ligase 4	protein-coding	3.63855937302794	3.78294876523776	4.02779446844526	3.80117117782752	3.8486262998234	3.57125200570472	3.73310866332058	3.93954834143133	-0.100484862314584	0.828970836962685	0.934333879868872
Merged-chr10-30674928-4	chr10	30674804	30675004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 9 of 14)	intron (NM_001358842, intron 9 of 14)	-19037.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	7.11122196085418	6.89943223253811	7.30795893311784	7.51923543151742	7.19154840644364	6.79344157050406	7.1113364986392	7.15359814216682	-0.224038547427518	0.310643361996839	0.622727754857458
Merged-chr5-76973663-4	chr5	76973588	76973788	+	902.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1013.0	NM_025691	66661.0	Mm.296976	NM_025691	ENSMUSG00000036323	Srp72	5730576P14Rik|72kDa|AI132477|BC019196|C77589	signal recognition particle 72	protein-coding	4.61388616817068	4.3768003284883	4.02912149402009	4.11810944475406	4.5988513924644	4.54970395097551	4.39935174195933	4.49829792795557	0.518153797423877	0.18707109783461	0.485314267518811
Merged-chr1-171130037-3	chr1	171129922	171130122	+	922.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025321, intron 5 of 5)	intron (NM_025321, intron 5 of 5)	8361.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	4.62523511484625	4.77178120530427	4.46824775350944	4.94117835354382	4.53087353768115	4.14827613002639	4.11849277494692	4.23670608927481	-1.01227184069173	0.0119969917225775	0.0899256396189287
Merged-chr14-55736488-4	chr14	55736403	55736603	+	883.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	9181.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	4.44777004572464	4.05040092195309	4.36060905540042	4.72036884212622	4.08588109818016	4.3960842729267	4.46932775470075	5.04232166910993	0.264158258301838	0.560028210956441	0.804176966000292
Merged-chr14-50897592-4	chr14	50897523	50897723	+	776.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4368.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	4.04814237180328	3.71047626307655	3.79965927504873	3.98581271007652	3.8945040039659	3.86328751114702	4.11731472096185	4.17503147282257	0.323912746042074	0.462387668734637	0.743915100421832
Merged-chr4-106770976-4	chr4	106770909	106771109	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025590, intron 2 of 15)	intron (NM_025590, intron 2 of 15)	28822.0	NM_025590	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	4.61664449822934	4.57194244358206	5.18738662466662	5.03342667427964	4.91321334707257	4.87344217689781	4.5110655795815	4.81120597765127	-0.198288011988676	0.59092188592343	0.821363996917414
Merged-chr11-80383876-4	chr11	80383712	80383912	+	968.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045038, intron 1 of 16)	intron (NR_045038, intron 1 of 16)	533.0	NM_001130171	22680.0	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	4.33750062644157	4.34807347012039	4.58467383599773	3.90398186424654	4.70686667913875	4.5564233124869	4.40541591435951	4.42288287230089	0.548630546273215	0.17892069439053	0.474955296131163
Merged-chr7-104398648-4	chr7	104398549	104398749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40003.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	6.19578213549378	5.92061686770283	5.87356369618634	5.80970160398048	6.33532736555502	6.07495923418762	6.25623146917494	6.2481671718369	0.453695254342784	0.0576287947366306	0.251963143768958
Merged-chr5-104938706-2	chr5	104938576	104938776	+	663.5	f0_balb.idr|f1_balb.idr	intron (NM_030239, intron 14 of 15)	intron (NM_030239, intron 14 of 15)	44041.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	3.09241574209542	2.87020985148448	3.14454891311527	3.48304549830249	2.48230372625158	2.52595945888794	2.57705520939897	2.50325036417549	-4.16616246116278	3.53924084245049e-05	0.000836108941004923
Merged-chr12-40381381-4	chr12	40381285	40381485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178845, intron 1 of 11)	intron (NM_178845, intron 1 of 11)	64405.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	6.04966747540271	6.54472686025262	6.05074270938246	5.42705945765219	6.28963701033888	6.28765841236158	5.81572285715868	5.68384875506332	-0.0324954417893333	0.921341486888109	0.970853242760199
Merged-chr11-50262214-3	chr11	50262120	50262320	+	787.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 3 of 4)	RSINE1|SINE|B4	-23688.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	3.62639001483694	3.48514830741827	3.22971046304012	3.50831193234332	3.48683658329829	3.46920566472312	3.6114725597022	3.41321192672277	0.0815925207411193	0.871793260473068	0.95183223179801
Merged-chr1-127322454-3	chr1	127322349	127322549	+	880.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 4 of 17)	(TG)n|Simple_repeat|Simple_repeat	117463.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	3.56370053136648	3.49137128122144	3.31143782513125	3.90810440757135	3.98280480947465	3.68075764705726	3.60649435846771	3.95534766898079	0.638432032896521	0.228207573285462	0.537049703453888
Merged-chr5-140749740-4	chr5	140749639	140749839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 7 of 7)	intron (NM_173405, intron 7 of 7)	25612.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	6.16252949561427	6.69204234204688	5.71441112301703	6.10578721888778	6.12009203118689	6.02731882633815	6.31590405801314	6.1187562447971	-0.105918136867741	0.707099219094989	0.882396225404233
Merged-chr2-80081493-7	chr2	80081358	80081558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	MER31A|LTR|ERV1	-42556.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	5.22081279253052	4.81054531494657	5.163420813215	4.91187226933094	4.79208816128019	5.17749380152194	4.98024127021747	4.73949832612324	-0.197325014748067	0.555965037714074	0.801730133825154
Merged-chr19-17125570-4	chr19	17125490	17125690	+	977.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181348, exon 9 of 20)	exon (NM_181348, exon 9 of 20)	169472.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	5.6952870787219	5.06850591626081	5.05006981467756	5.77702752364119	4.99824967158561	5.29823185982172	4.9510954483525	5.39649117380806	-0.514786133050741	0.141636580525441	0.418816599528155
Merged-chr2-180040520-4	chr2	180040422	180040622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011969, intron 1 of 6)	intron (NM_011969, intron 1 of 6)	1942.0	NM_001289476	26444.0	Mm.21728	NM_011969	ENSMUSG00000027566	Psma7	C6-I	proteasome (prosome, macropain) subunit, alpha type 7	protein-coding	6.17893387434055	6.74455119150485	6.38992447033284	6.39199709220106	6.26100983541781	6.49364809783659	6.39170728517767	6.13343956820879	-0.181037577159093	0.448939017576491	0.734140160849337
Merged-chr4-120287935-4	chr4	120287832	120288032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194060)	promoter-TSS (NM_194060)	-671.0	NM_194060	329934.0	Mm.277090	NM_194060	ENSMUSG00000052135	Foxo6	-	forkhead box O6	protein-coding	5.54902424958382	6.00054769062821	5.52036643794001	5.66950169591521	5.74189838091087	5.9647945514896	6.09648486947792	5.96593567482655	0.386717356537983	0.148082647238216	0.429637222960315
Merged-chr6-97456433-4	chr6	97456327	97456527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	2859.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.60277371549514	7.65256798606157	7.97773951951647	7.99758646089107	7.37945966644683	7.45542567076396	7.53148544215881	7.38054993486569	-0.51499423727216	0.00558530609653792	0.0515370109729677
Merged-chr11-69420364-4	chr11	69420272	69420472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081330)	TTS (NM_001081330)	-6697.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	5.86014939637504	5.645098758725	5.66991545650175	5.27512400203477	5.71435675624088	5.79293737957626	5.87453622366304	5.81187799769788	0.315642641459221	0.254270636249235	0.565605577061989
Merged-chr1-107497027-4	chr1	107496937	107497137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14386.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	6.90123670419219	6.54030797121773	7.02331867616715	7.09964155816208	6.50158539460943	6.29879665539584	6.69118831796884	6.6454130345306	-0.529343409108974	0.0210644392346353	0.132579867387223
Merged-chr4-48279688-4	chr4	48279624	48279824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010569)	promoter-TSS (NM_010569)	-36.0	NM_010569	16348.0	Mm.317706	NM_010569	ENSMUSG00000028344	Invs	Nphp2|inv	inversin	protein-coding	8.76384561361986	9.07495078508683	9.13080789294778	9.2597390366581	8.91068075592023	8.98095503760078	9.30444410270155	8.93172732027346	-0.0404747232639464	0.817214500212837	0.929714396168039
Merged-chr9-35116932-4	chr9	35116819	35117019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009178)	promoter-TSS (NM_009178)	-55.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	7.55999868767568	7.64164278754069	7.73764149015516	7.43398405088016	7.8135842144981	7.70201410702591	7.68422467654123	7.45277044045761	0.110172003401377	0.542380037104137	0.793816675281769
Merged-chr10-42678889-4	chr10	42678800	42679000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172416)	promoter-TSS (NM_172416)	-16.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	7.47669983412099	7.54721851623993	7.01058351367301	7.6245245600437	7.72391102823957	7.72014065464249	7.67405742032954	7.66635738343297	0.329429277449116	0.0920059231285011	0.331723716055292
Merged-chr9-88858970-4	chr9	88858866	88859066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037982)	promoter-TSS (NR_037982)	-96.0	NR_037983	319673.0	Mm.149040	NR_037982	ENSMUSG00000097177	9330159M07Rik	1700096K11Rik|mU50hg-a	RIKEN cDNA 9330159M07 gene	ncRNA	8.50002527866941	8.42300317409677	8.54710323515968	8.00059641261994	7.93398773237859	7.76716690629647	8.10368345170201	8.04682590294849	-0.521205745890815	0.00619356337412867	0.0555368666423664
Merged-chr8-25445291-4	chr8	25445219	25445419	+	929.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-73440.0	NM_001079909	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	4.41286709030962	4.80506545303318	5.12620020867883	5.32860759687747	4.25489037160197	4.5958832840289	4.91661057846088	4.86921625246783	-0.601129188848581	0.147845563210924	0.429267768459732
Merged-chr17-80083429-4	chr17	80083335	80083535	+	936.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21167.0	NM_144802	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	5.26616266644883	4.68872961987375	4.6713506333815	5.06483705894733	5.17949982641891	4.62211361793629	4.84415547117856	4.96906713944723	-0.0426874400670656	0.906393774973327	0.965342382154129
Merged-chr7-25249368-5	chr7	25249284	25249484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010155, intron 1 of 3)	CpG	1374.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	4.55425724522454	4.98053314956654	4.68670957748493	4.70363598032071	4.81933256697431	5.12300037343843	4.7452720773688	5.35038064809766	0.568876456896341	0.107554194260453	0.361642023395757
Merged-chr11-115051366-4	chr11	115051255	115051455	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172050)	TTS (NM_172050)	-3060.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	3.97348962207487	4.07760043884651	4.02550735350289	4.30417988464727	4.60974288827739	3.73480721792762	4.00879301004932	4.33470105446069	0.289760115930643	0.540032603916699	0.792463821677907
Merged-chr2-160374422-3	chr2	160374319	160374519	+	900.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7354.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	3.42033949647004	3.5900133644368	3.69168304925221	3.62892618369669	3.48826476852844	3.53504565233281	3.40866566162573	3.78336103687108	-0.0962694558797162	0.845534116536035	0.941541479027525
Merged-chr5-139282414-4	chr5	139282309	139282509	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	28912.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	5.21044323814448	5.27848649152138	4.81053811737102	4.79258701840399	5.55399607137996	5.14893598481505	5.18550502173453	5.56005810276062	0.650918328748136	0.0459774524310685	0.220082655453331
Merged-chr10-68446043-3	chr10	68445943	68446143	+	964.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028491, intron 5 of 7)	intron (NM_028491, intron 5 of 7)	95832.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	4.22369702391406	4.62469013154926	4.57364421988701	4.81152600170059	4.15090482531728	4.4959746170781	4.58935986826742	4.17085578737178	-0.526537809006386	0.194359219088956	0.494755332451119
Merged-chr8-25187701-4	chr8	25187645	25187845	+	796.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177089, intron 2 of 12)	intron (NM_177089, intron 2 of 12)	13797.0	NM_199323	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	3.65343457822263	4.09287927027817	3.53843621452522	4.22635311276268	3.50030461454565	3.59278571031639	3.7444642806131	3.53666332119876	-0.994922926156864	0.0553472520741729	0.245992010951455
Merged-chr1-166138340-4	chr1	166138247	166138447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360925, intron 1 of 5)	intron (NM_001360925, intron 1 of 5)	8126.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	7.23778867273703	7.3567232904971	7.27132792112165	7.53764372666277	7.03990390557905	7.38290560576811	7.29698341841442	7.00772615008648	-0.244198703781374	0.214529060141429	0.520353182806768
Merged-chr5-105519277-4	chr5	105519183	105519383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133897)	promoter-TSS (NM_133897)	-188.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	7.33845319694517	7.65203112733498	7.17667197513267	7.04967436379567	7.59595450957659	7.38842986906122	7.55935563644479	6.85699182503396	0.0882168461286124	0.71075292170793	0.884203816607274
Merged-chr9-96517654-4	chr9	96517562	96517762	+	896.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38987.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	4.9602484149617	4.51090270468437	4.82243332990887	5.23923920295607	4.54060412355149	4.66915038228584	4.90409005179884	4.98996908590469	-0.296999714604311	0.431186519136942	0.721506070940063
Merged-chr17-27571450-4	chr17	27571324	27571524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A2|LTR|ERVK	-5697.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	6.53284113511787	6.4565398831882	6.66170114813119	5.99204609429531	6.19207348149953	5.87515080410774	6.07974815224092	5.66063918785958	-0.679555126394845	0.0143217569730599	0.101500217080433
Merged-chr15-96631372-5	chr15	96631294	96631494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	L1M2|LINE|L1	10568.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	5.13798183748871	5.22329305777336	5.50462835005339	5.32322033474937	5.77042448556171	5.35068062705945	5.5283753698305	5.26913534091374	0.358198221709204	0.227814059314431	0.536495514572106
Merged-chr9-55326759-4	chr9	55326671	55326871	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357568)	promoter-TSS (NM_001357568)	-142.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	4.79683221185074	5.17146067185375	5.04449786717158	4.97783278754523	4.91574742919866	5.04671592358916	4.77517329371379	4.67231545679075	-0.287931579444113	0.381668038990395	0.683861748681093
Merged-chr15-37786958-3	chr15	37786809	37787009	+	885.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359844, intron 1 of 7)	L1MB3|LINE|L1	5091.0	NM_001170866	52589.0	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	3.41787173649676	3.24538760738133	3.36445759379428	3.34727426983432	3.58974785692	3.16392825011627	3.29600291432544	3.24777074806404	0.00771956281360095	0.988574780447605	0.995479932082398
Merged-chr9-70833265-4	chr9	70833166	70833366	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	101542.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	5.1779925723367	5.28339405580576	4.83042635054992	5.31745106237084	5.40386676569774	4.92692524977152	4.92166236006828	4.6568786164782	-0.286372564620124	0.422092830662812	0.714435250606338
Merged-chr16-16912036-4	chr16	16911932	16912132	+	873.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176833, intron 3 of 7)	intron (NM_176833, intron 3 of 7)	15563.0	NM_176833	68606.0	Mm.230296	NM_176833	ENSMUSG00000026181	Ppm1f	1110021B16Rik|4933427B07Rik|CaMKPase|Popx2|mKIAA0015	protein phosphatase 1F (PP2C domain containing)	protein-coding	4.36510272140606	3.91589513219438	4.12340547682178	4.18777968444509	3.82607708803678	4.2474505371162	3.91374535773563	3.92723949672794	-0.473807169809282	0.278849240763828	0.591054766335978
Merged-chr8-105900404-4	chr8	105900299	105900499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173432)	promoter-TSS (NM_173432)	-75.0	NM_173432	244631.0	Mm.27627	NM_173432	ENSMUSG00000048310	Pskh1	AW539964|E130013P03Rik|b2b1230Clo	protein serine kinase H1	protein-coding	7.27851565741081	7.34469823591697	6.80172161930575	7.16020720769691	7.25573392392418	7.39226688810749	7.04007771130422	7.48581582451722	0.186051115045366	0.375610351597547	0.678579934364767
Merged-chr10-98893734-4	chr10	98893684	98893884	+	886.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-20858.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	4.03629813589444	4.13613658274968	4.43476877093996	4.191172058733	4.41078353874975	4.21129562344063	4.02078221992242	4.39367426436711	0.171441896334386	0.67403434938403	0.865983965214928
Merged-chr2-129597278-10	chr2	129597223	129597423	+	965.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	1861.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	3.34649137688329	3.69805573302743	3.75187061946944	2.91966261760682	3.42646279264247	3.40168732849487	3.27419808121825	3.28447083079885	-0.407699486117184	0.497211761423502	0.766982020988234
Merged-chr2-163761601-4	chr2	163761487	163761687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11348.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	6.55759323963891	6.6039350623925	6.74581548790578	7.19753728816878	5.85108716768828	5.89110652297944	5.97165396856812	6.23840081432385	-1.2308767279353	1.93490175254786e-06	6.36434250668225e-05
Merged-chr2-28495237-4	chr2	28495134	28495334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_I-int|LTR|ERV1	-1657.0	NM_139197	227671.0	Mm.484270	NM_139197	ENSMUSG00000026829	Gbgt1	Fgs|Fs	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1	protein-coding	7.08001619183099	7.09565623546785	6.52717994264811	6.59762138779453	7.12682808831121	6.96163133120689	7.03405768224942	6.82262467348242	0.20990564996572	0.358371153538893	0.664380976348606
Merged-chr8-120564035-4	chr8	120563946	120564146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 3 of 15)	intron (NM_001145896, intron 3 of 15)	25029.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	8.65051157217056	8.82882276645402	8.71319391619326	8.60211122378015	8.73174513748388	8.71682528404384	8.8955791673557	8.6685980315484	0.0710504626283674	0.634388398685522	0.845111112089176
Merged-chr5-123864224-5	chr5	123864084	123864284	+	904.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030701, exon 1 of 1)	3' UTR (NM_030701, exon 1 of 1)	1332.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	3.54108211044902	3.52560752555304	3.6009123023683	3.63777928250015	3.7133316967979	3.98494968009968	3.9367525217457	3.99554587003773	0.957787560478278	0.0370232151957174	0.191809843104736
Merged-chr1-74248937-4	chr1	74248827	74249027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 4 of 10)	intron (NM_001357387, intron 4 of 10)	12410.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	8.08552618504178	8.14567095562302	8.30096786878422	8.36298820172282	7.99246523750066	8.00597833894429	8.37137811968772	8.11349008375658	-0.134375382654185	0.438197825536904	0.726297851003868
Merged-chr3-121630800-4	chr3	121630693	121630893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12692.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	6.97063871516131	7.32385187997117	7.22299305605291	6.83682902080297	7.37231448625811	7.22611764998018	7.46617700939895	6.92659951859937	0.233784353826137	0.284959088162873	0.596719806311822
Merged-chr8-79679204-2	chr8	79679094	79679294	+	707.083374	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	32546.0	NM_015751	24015.0	Mm.5831	NM_015751	ENSMUSG00000058355	Abce1	C79080|Oabp|RLI|RNS41|RNS4I|Rnaseli	ATP-binding cassette, sub-family E (OABP), member 1	protein-coding	4.02814083427026	3.91833634008228	4.12608613713786	4.12712962612435	4.00531830967451	4.25137254436777	4.24012528094442	4.41505720990994	0.436913733358066	0.288326037274251	0.600361543621106
Merged-chr2-52471690-4	chr2	52471583	52471783	+	842.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 4 of 13)	intron (NM_001037099, intron 4 of 13)	-46809.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	3.78099758695037	3.78315438658135	4.07516973127244	3.84947932687122	3.92889095623488	3.8447656212443	4.18012405059509	3.93439117888298	0.28757865992919	0.51056237467644	0.774867939359323
Merged-chr11-34827992-4	chr11	34827904	34828104	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027411, intron 2 of 11)	Lx7|LINE|L1	5637.0	NM_027411	70385.0	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	5.3912202153882	5.17009445060499	5.0746288917117	5.37685155579045	5.6055595861712	5.31951845675752	5.15286639560081	5.49596018889119	0.262761083035569	0.380618698842232	0.682959506520613
Merged-chr2-157259924-3	chr2	157259824	157260024	+	679.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039557, intron 4 of 24)	intron (NM_001039557, intron 4 of 24)	-19174.0	NM_001355163	20014.0	Mm.22130	NM_019642	ENSMUSG00000027642	Rpn2	1300012C06Rik|AV261018|Rpn-2	ribophorin II	protein-coding	3.4080716934931	3.01487984347029	2.97552716802914	2.81132540281277	3.58614758840933	3.57882792307829	3.16677015152414	3.40652220099568	1.43282060592118	0.0149805946077009	0.104724390451929
Merged-chr17-29033885-3	chr17	29033776	29033976	+	847.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036613, intron 1 of 6)	B1_Mm|SINE|Alu	1216.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	3.1605823383948	3.23907611342861	3.21753677993138	3.06710735612017	3.25068962005235	2.94055596999065	3.02987378689638	3.21578302397578	-0.180504716094657	0.751080529188067	0.90197838718897
Merged-chr4-70535048-4	chr4	70534948	70535148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172694)	promoter-TSS (NM_172694)	-120.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	8.715865123358	8.78060466574352	8.90888865353743	9.2093760852492	8.92374610966727	8.93837609868477	9.37886573107212	8.8132317456318	0.135336467512141	0.479545065967184	0.755300456949863
Merged-chr17-84935797-2	chr17	84935700	84935900	+	677.200012	f0_balb.idr|f0_c57.idr	intron (NR_027929, intron 2 of 3)	intron (NR_027929, intron 2 of 3)	-20941.0	NM_001159497	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	3.8140813124235	3.82367100808578	3.75578032875906	4.75487971107319	3.95878414873344	4.10076439947396	4.10302981040959	4.16345685530625	-0.131345189039245	0.802972201609757	0.923965812075785
Merged-chr2-136891116-3	chr2	136891056	136891256	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028201)	promoter-TSS (NM_028201)	-62.0	NM_028201	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	6.84438716302756	6.75337358907719	6.83085818131176	7.00256633779581	7.35078506613964	7.58072392049007	7.54968691857527	7.41757067580309	0.818310637763657	1.48456395837002e-05	0.000392386847355439
Merged-chr2-156960123-1	chr2	156960023	156960223	+	588.0	f0_balb.idr	intron (NM_001355394, intron 1 of 15)	Lx3_Mus|LINE|L1	31580.0	NM_001355391	29812.0	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	3.70879449405387	3.71683653750397	3.32442832863397	3.20366770295632	3.62523835507029	3.56227781635075	3.48979784210042	3.55612230393721	0.201206275034831	0.701486906803499	0.879751706170596
Merged-chr2-132247768-4	chr2	132247662	132247862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141971)	promoter-TSS (NM_001141971)	26.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	7.80083175242988	7.82186032199739	7.18039576507884	7.30054574629642	7.88790324298028	7.92632497513262	7.5811406492547	7.38788253902242	0.213748774311073	0.351175047157991	0.658644512922243
Merged-chr5-115535842-4	chr5	115535738	115535938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-23629.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	6.63683097759758	6.44839759191825	6.54357439665067	6.81502514131815	6.52526048591349	6.42861005241609	6.6915607889577	6.53890610466385	-0.117411200766799	0.588562466049348	0.819781378215106
Merged-chr19-7558928-3	chr19	7558817	7559017	+	927.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362425, intron 2 of 4)	MER97c|DNA|hAT-Tip100	1432.0	NM_001362425	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	3.71637941696481	3.70315006002771	3.55040824410643	3.12923351505943	4.15510056299953	3.98793835889859	3.64863587615732	3.48815375273927	0.939209795856118	0.0818833756441923	0.310546703508212
Merged-chr12-119157904-4	chr12	119157810	119158010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80366.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	7.00674425713421	7.05991761376068	7.05827626236455	6.9293690651945	7.25416005185557	7.28359360777949	7.53030959617346	7.13672394099518	0.407895870838464	0.0313048395822954	0.172278272508752
Merged-chr3-35932439-4	chr3	35932345	35932545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205362)	promoter-TSS (NM_001205362)	-111.0	NM_001205362	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	5.48230250575159	5.37319731891116	6.24990571098896	5.4290800155709	5.39155229740838	4.99141955384868	5.56152870523471	5.20073033414784	-0.6443806411387	0.0642570851024541	0.269393041613122
Merged-chr13-44484098-4	chr13	44483991	44484191	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	44364.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	4.28525750484385	4.65916915419533	4.59986090892776	4.20249877895242	4.51433237182399	4.88610032808658	4.26746204661447	5.11232995659624	0.625241278755725	0.129498516815428	0.400433334567328
Merged-chr13-98316854-6	chr13	98316682	98316882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_137279)	promoter-TSS (NR_137279)	185.0	NM_145455	218490.0	Mm.371688	NM_145455	ENSMUSG00000021660	Btf3	1700054E11Rik	basic transcription factor 3	protein-coding	5.18160176356096	5.34728346471518	5.99085596202462	5.16145390394094	5.57908534675478	5.93242658357275	5.44655925312274	5.90716673252494	0.462053909593225	0.159992764655712	0.44782245361498
Merged-chr9-83691707-4	chr9	83691569	83691769	+	807.416626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046066, intron 1 of 2)	intron (NR_046066, intron 1 of 2)	194.0	NR_046066	100039222.0	Mm.405596	NR_046066	ENSMUSG00000100155	Gm2109	-	predicted gene 2109	ncRNA	3.33307956957834	3.30722774017791	3.49398778835668	2.83522128085864	3.30096558962094	3.32894626830535	3.13988117182028	3.58841432583452	0.323501688743532	0.586196204168649	0.818557203798918
Merged-chr13-26792036-4	chr13	26791942	26792142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-21877.0	NM_008232	15192.0	Mm.7411	NM_008232	ENSMUSG00000045835	Hdgfl1	4921520N01Rik|HRP-1|Hdgfrp1|Pwwp1	hepatoma derived growth factor-like 1	protein-coding	4.34133206680334	4.61790902780477	4.34196152499801	4.9439135538188	5.01100772909461	5.14635184025129	5.38995457781369	5.00309970539911	1.05547340639166	0.00594125680326447	0.0538854963840401
Merged-chr10-8913069-6	chr10	8913047	8913247	+	787.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-27077.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.29238944274606	3.41022487792859	3.22378254729407	3.61269955775465	3.51930683176207	3.91334955734936	3.72878019793871	3.87845706884477	1.11241235607863	0.0366056903958573	0.190439275036604
Merged-chr10-19031153-4	chr10	19031054	19031254	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15744.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	6.37956991798436	7.15717679267468	5.48976330077988	4.78226352907133	6.80629150702629	6.70127068496611	5.93298165489442	5.4519161740086	0.0881065882569841	0.915092868500658	0.968440858886799
Merged-chr1-131245163-4	chr1	131245019	131245219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313731)	promoter-TSS (NM_001313731)	59.0	NM_001313731	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	5.00225239777643	5.11283900609859	5.17789049320405	5.30830657006761	5.49983441095508	5.31988871874671	5.51599689034709	5.10732655464855	0.378777557479836	0.209174431396128	0.513577117801228
Merged-chr15-50972714-1	chr15	50972614	50972814	+	733.0	f0_balb.idr	Intergenic	Intergenic	-82673.0	NM_032000	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	3.13038320556565	3.08072612636771	3.35453869226909	3.27800710437992	2.91387242414294	3.3023161146732	3.17852188880725	3.18879564519351	-0.274458934964182	0.630486145243166	0.842878375227979
Merged-chr8-120509391-4	chr8	120509382	120509582	+	992.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	20616.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	4.9141637108429	5.16528702185125	4.60152798481358	4.88947063345582	4.93954242755359	5.05229031728918	4.66579781297929	4.72509191512873	-0.108553411896688	0.753610342160195	0.902798885097597
Merged-chr4-155869043-2	chr4	155868941	155869141	+	817.0	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028020)	promoter-TSS (NM_028020)	399.0	NM_024472	79554.0	Mm.25556	NM_024472	ENSMUSG00000029073	Cptp	Gltpd1	ceramide-1-phosphate transfer protein	protein-coding	3.46471149644227	3.53371702415291	3.46515622982429	3.54611348520918	3.4446923795708	3.74503317636076	3.56140349619704	3.62558407204709	0.276816009525044	0.567725326119283	0.808331754798167
Merged-chr11-62470631-4	chr11	62470535	62470735	+	950.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039536, intron 1 of 6)	L1MB4|LINE|L1	12175.0	NM_001039536	327942.0	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	4.80053437008241	5.05913868699324	4.68558655395834	4.51615449812955	4.94994322484371	4.89935451498169	4.58135835551795	4.8344425140547	0.119319371612964	0.737450312408975	0.896392006995728
Merged-chr12-32820262-4	chr12	32820167	32820367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021524)	promoter-TSS (NM_021524)	-68.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	9.13671987178833	9.32111608055907	9.1118192690929	8.94780574952429	9.27042348619723	9.54649847834743	9.25361372884603	9.1292547318461	0.216029772123998	0.18584297523412	0.483738992085664
Merged-chr6-17590446-2	chr6	17590371	17590571	+	654.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46539.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	2.52994092288174	2.47385417893441	2.53014802613399	2.33897031214499	3.25975269559257	3.32910251215253	3.19314209069228	3.49238844863645	4.61616795650064	3.26678022009877e-08	1.56057818313027e-06
Merged-chr1-155902209-2	chr1	155902112	155902312	+	900.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001039184, intron 23 of 37)	intron (NM_001039184, intron 23 of 37)	71043.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	3.96377769622543	3.61702650263654	4.1046892814361	4.17007882015353	3.52735771022445	4.13761377045162	3.84579823069648	4.34286773619849	0.0297919988134613	0.95305410174997	0.983308033287352
Merged-chr2-22744388-4	chr2	22744300	22744500	+	907.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-29927.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	4.14551208873458	4.25425722247824	4.44755154396483	4.04720186866825	4.16627267236019	4.41172181249274	4.30728084560021	4.19123233010354	0.119509401732121	0.765191039836173	0.908076710590356
Merged-chr5-125405141-4	chr5	125405043	125405243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15126.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	5.90532618868442	5.89247750854346	6.18616862378062	6.02567829329939	6.3196914071976	5.84916766474696	6.22897405264145	6.48804650836997	0.36982623166901	0.141227159946298	0.418066459464235
Merged-chr7-4137141-7	chr7	4137042	4137242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033548)	promoter-TSS (NR_033548)	86.0	NM_172736	232798.0	Mm.22831	NM_172736	ENSMUSG00000035545	Leng8	AW049671	leukocyte receptor cluster (LRC) member 8	protein-coding	7.45984253378121	7.84098272340442	7.7546683098102	7.17308696279996	7.73479071421794	7.57893740288836	7.55314585650464	7.7261012717993	0.103637530163968	0.619856301839365	0.836874864990996
Merged-chr10-111544128-4	chr10	111544034	111544234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37848.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	7.71536751041394	7.91708864180467	8.03275283066378	8.16342553010879	7.7823082178394	8.10173823776634	7.85753380752717	7.69458701548378	-0.142890554145195	0.442355464232778	0.729076466644861
Merged-chr4-33249376-3	chr4	33249268	33249468	+	800.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033225)	promoter-TSS (NM_001033225)	-581.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	3.42131275365724	3.25120260517094	3.58609257732052	3.31018764566129	3.67742472499867	3.6506482979081	3.2883810972637	3.72932405889676	0.688100552527354	0.179167469405665	0.475360120203737
Merged-chr4-117191912-3	chr4	117191819	117192019	+	874.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-9295.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	3.13244039332186	3.34703872763275	2.8478529062689	2.85844626343216	2.36121135330293	2.59313003819207	2.48008382801014	2.90848144969323	-2.40745573672251	0.00365673559692579	0.0373165280363556
Merged-chr14-60988308-4	chr14	60988156	60988356	+	807.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013869, intron 5 of 9)	intron (NM_013869, intron 5 of 9)	49731.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	3.42272036812869	2.94822123557276	3.23842348764143	3.07751377315771	3.74961780414504	3.98258180408261	3.51834512212917	3.36254588523795	1.69614949590104	0.00232039587508025	0.0262164219035456
Merged-chr11-21241512-4	chr11	21241416	21241616	+	800.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290628, intron 1 of 22)	intron (NM_001290628, intron 1 of 22)	2484.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	3.90164755889224	3.56463461931284	3.5821922220853	3.70353975280366	4.22741032208502	3.75977431617096	4.01798195101842	3.63933585652642	0.709060519833504	0.139433680901483	0.415174648520671
Merged-chr5-121251966-4	chr5	121251771	121251971	+	984.28125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 1 of 75)	intron (NM_181421, intron 1 of 75)	31652.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	4.12747451501046	3.5515115353976	4.04032879480002	4.24327140536002	3.71700495434432	3.85388540556872	3.82865319936105	4.12548233652491	-0.376014904514478	0.435891297676209	0.724865609157659
Merged-chr9-104035479-4	chr9	104035400	104035600	+	916.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028721, intron 19 of 26)	intron (NM_028721, intron 19 of 26)	27621.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	4.06071233379369	4.7258164778464	4.11445132073177	4.47023540336188	4.50295056239391	4.34179197499757	4.53111541361027	4.11210100266473	0.0125776398093556	0.976408339638082	0.991537706656775
Merged-chr4-43383406-4	chr4	43383315	43383515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 1 of 11)	intron (NM_001037709, intron 1 of 11)	1433.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	5.97015990232566	5.88609516639852	5.6693076742814	5.89960238363496	5.8672632100145	5.58718303365479	5.69180836850292	5.55593068654069	-0.281867922113735	0.277936847117171	0.589999309324299
Merged-chr5-124112840-2	chr5	124112740	124112940	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025671, exon 2 of 7)	exon (NM_025671, exon 2 of 7)	519.0	NM_001347478	66627.0	Mm.7050	NM_025671	ENSMUSG00000023707	Ogfod2	1300006G11Rik|5730405M13Rik|AU041636|AW552395	2-oxoglutarate and iron-dependent oxygenase domain containing 2	protein-coding	3.09630429608446	3.20641235953747	3.15950308265831	2.93363306880679	3.43974360489896	3.20780457313542	3.20738132180437	3.48122798217972	0.949295636365657	0.0828352846612524	0.312676073972704
Merged-chr7-142342021-3	chr7	142341916	142342116	+	977.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177265, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	30243.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	4.55228176425223	5.30279581263009	4.46269508713716	4.32665970845332	4.87800928392427	4.99968183679927	4.4427895048111	4.67468392624639	0.0923960074786561	0.828126850137567	0.934052340721978
Merged-chr12-79072721-4	chr12	79072614	79072814	+	969.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181073, intron 20 of 28)	intron (NM_181073, intron 20 of 28)	16956.0	NM_029988	110417.0	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	5.33088318484621	4.74324883807121	5.09853151575278	5.34158157927228	4.94608983034715	4.82207336574161	5.10489479628505	4.84851479466758	-0.429289439238304	0.203382153515858	0.506170662223812
Merged-chr16-27457528-3	chr16	27457421	27457621	+	842.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	68565.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	3.24264700717471	3.46237255044155	3.11444190780871	3.1718058853642	3.3557299700298	3.68452950776142	3.23147755339082	3.3584311303624	0.576054395896942	0.28675342064441	0.598434976047393
Merged-chr19-15925073-4	chr19	15924982	15925182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205339)	promoter-TSS (NM_001205339)	-23.0	NM_177420	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	6.20537504886025	6.21012109494495	6.52086762001921	6.57248847876363	5.91690326043139	5.467946243804	5.99367064029493	5.61472806482835	-0.966211081826148	0.000275146419634456	0.00472901296383639
Merged-chr19-32911502-4	chr19	32911421	32911621	+	718.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	153944.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	3.7987998912264	3.79121132791524	3.85128890068099	3.87771269898296	3.94522606443702	3.91994617388591	3.49233990003011	4.27624352088769	0.296402114184877	0.533039900548571	0.78842231534083
Merged-chr15-28374608-4	chr15	28374522	28374722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 52 of 78)	intron (NM_133365, intron 52 of 78)	170856.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	8.77824280986558	8.89163807799847	8.52806357301985	8.51272505278162	8.60171305644128	8.77262370501122	8.62282762387689	8.30414525959143	-0.125202391539236	0.47917150902301	0.754947224111449
Merged-chr16-59460793-2	chr16	59460679	59460879	+	701.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_001081190, intron 8 of 8)	B3A|SINE|B2	8459.0	NR_040568	75636.0	Mm.490522	NR_040568	ENSMUSG00000099983	1700022E09Rik	-	RIKEN cDNA 1700022E09 gene	ncRNA	2.94663693431422	2.78517822298493	2.86181750849265	2.33803761349149	4.25070880831027	3.83861707645852	3.82771024147007	3.92999958129221	7.27578671686761	3.2154921355199e-15	5.38530622856872e-13
Merged-chr13-101656018-4	chr13	101655919	101656119	+	970.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	36611.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.8390954310374	5.72606564226604	5.62308814369257	4.14316916749597	5.73744496571719	5.61569584957887	5.43907559486399	5.7576546195235	0.668425951300318	0.280405402278955	0.592395112454402
Merged-chr4-56802406-4	chr4	56802269	56802469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026079)	promoter-TSS (NM_026079)	-38.0	NM_026079	230233.0	Mm.282743	NM_026079	ENSMUSG00000028431	Ikbkap	3110040G09Rik|6030413P05|C78473|Elp1|IKAP	inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated protein	protein-coding	6.66066861604972	6.8460570473067	6.99077977191108	6.64068324633689	6.68095227194938	6.98580678674893	6.59631720421335	6.99782915417841	0.0519662258753507	0.811381222215672	0.927004446414814
Merged-chr9-83575571-4	chr9	83575463	83575663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	MLT1A0|LTR|ERVL-MaLR	27225.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	6.20150645461541	6.09669226271713	6.69910381287655	6.7847544337883	5.68135027549486	5.73475662569645	6.19008653231992	6.29270531515039	-0.745626097034638	0.0105978360422536	0.0823339196301643
Merged-chr6-148761605-4	chr6	148761513	148761713	+	936.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69854.0	NM_001081113	320727.0	Mm.260105	NM_001081113	ENSMUSG00000040029	Ipo8	6230418K12Rik|Abcc10|C130009K11Rik|MRP7|OM-1|Om1|Ranbp8	importin 8	protein-coding	4.54299783871239	4.80552876218184	4.71543712278409	5.122827213335	4.84360816027757	4.72235645370949	5.1826818318646	4.82757952632694	0.139414417669502	0.700238678584004	0.879054781621322
Merged-chr13-76262637-3	chr13	76262546	76262746	+	927.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-122315.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	3.61660534428808	4.14620326140585	3.89339800132432	3.91109961207287	2.89481885595856	3.00356143226525	3.11684843609958	3.04988975579196	-4.01476663797269	2.20525457634444e-07	8.80357910766244e-06
Merged-chr12-8519632-4	chr12	8519503	8519703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19594.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	7.49962216119204	7.38553620233563	7.7036628483245	8.1830087376597	7.75341661729905	7.3535426357588	7.97368616373818	7.62295832495119	-0.0592572443587351	0.802836612309885	0.923936032101707
Merged-chr14-78631104-3	chr14	78631011	78631211	+	916.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104044, intron 1 of 27)	B1F|SINE|Alu	-1821.0	NM_001281794	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	4.35158126411831	4.15787788031137	4.15648339110872	4.10711911501482	3.74199186187783	3.69624458753835	3.74778626598516	3.87025830782766	-1.20155014717079	0.00677494258359834	0.0594469475046778
Merged-chr6-34359229-4	chr6	34359135	34359335	+	965.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008012, intron 4 of 9)	intron (NM_008012, intron 4 of 9)	5089.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	4.88453883171707	5.1154505600294	4.67503553261374	5.23841956282194	5.05971218375395	4.94300143375375	5.44010837478703	5.41410724699442	0.403897656316249	0.239383837082686	0.54977259831925
Merged-chr11-116868322-4	chr11	116868247	116868447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 9 of 12)	intron (NM_178620, intron 9 of 12)	14347.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	6.99236845537818	6.77475074565136	6.66490065818758	6.83526010627833	6.54937503091281	6.51676337070356	6.36540850618692	6.59818473791056	-0.448343343923168	0.0311561946736458	0.171685900803238
Merged-chr16-24879326-4	chr16	24879232	24879432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 9 of 12)	intron (NM_178665, intron 9 of 12)	157477.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	5.96354952607714	5.98637096484546	5.98717163203424	6.47873271569747	6.10405378162247	6.20665972913901	5.84029422443514	6.06929642504232	-0.130860535508821	0.620822120293763	0.837500887125037
Merged-chr15-100405619-4	chr15	100405509	100405709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001146161, exon 8 of 16)	exon (NM_001146161, exon 8 of 16)	17446.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	6.1811822604091	6.47796492863077	6.11991471484019	6.48392956986047	6.11479216918818	6.33800591572641	6.60395468597642	6.2374573002896	-0.0133841196137378	0.956311074035893	0.984641708333466
Merged-chr2-60284799-2	chr2	60284693	60284893	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001290660)	promoter-TSS (NM_001290660)	-309.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	5.82109941383511	5.48314597944256	5.40556088324051	5.49919906524276	5.87038743450079	5.55171180521156	5.65276255106177	5.62697250508826	0.228101679829402	0.403602373978999	0.700922982752502
Merged-chr17-71531694-3	chr17	71531597	71531797	+	765.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4840.0	NM_023294	67052.0	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	2.84400904284614	2.61326271068908	2.60068706428763	2.19416339832048	3.19719307363624	3.23910470481564	3.86925491877368	3.39414824580806	4.09176758742175	0.00223292657285535	0.0254478575748823
Merged-chr8-61686528-1	chr8	61686428	61686628	+	580.0	f0_balb.idr	intron (NM_001293772, intron 9 of 21)	intron (NM_001293772, intron 9 of 21)	73570.0	NM_001293773	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	2.66277274669198	2.96129698135269	2.59007604328549	2.91645440486721	2.74025453701182	3.02883539898948	2.85042224273556	2.91883227998454	0.382444853658856	0.557825814057082	0.802877090200368
Merged-chr8-82370839-4	chr8	82370728	82370928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	31758.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	6.28373682963317	6.40805321339459	6.00936060286246	6.28815198790038	5.94479182832156	5.99767677960425	5.81555749415829	5.89011119197719	-0.539365181031044	0.0240210268741202	0.144579119894555
Merged-chr10-52256040-3	chr10	52255950	52256150	+	891.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347444, intron 1 of 9)	intron (NM_001347444, intron 1 of 9)	22431.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	3.91424752105608	3.71772356721061	3.65722189213427	4.08745511807756	3.7894672621826	3.77444383733313	3.80224878757264	3.81571451426961	-0.219321377082614	0.635749204525021	0.845879070394349
Merged-chr5-43845231-3	chr5	43845107	43845307	+	950.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23602.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	4.15256038705872	4.13623196687527	4.32270711054305	4.46538131083979	3.81783813181825	3.91089913222813	4.34105131671686	3.72652040364239	-0.823693355715652	0.0683399529277191	0.279190209797519
Merged-chr4-53631528-2	chr4	53631454	53631654	+	631.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195284)	promoter-TSS (NM_001195284)	83.0	NM_001195284	319636.0	Mm.103464	NM_176966	ENSMUSG00000054752	Fsd1l	A230072O16Rik|Ccdc10|Csdufd1|Fsd1nl	fibronectin type III and SPRY domain containing 1-like	protein-coding	3.48021158258368	3.2506734930552	3.62706514256656	3.11052673885578	3.24290262924758	3.42989192651616	3.24355158638094	3.37099710157839	-0.176147406918576	0.749064179775487	0.901187172003694
Merged-chr11-69041090-4	chr11	69040990	69041190	+	993.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4547.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	6.17455811110902	6.14889726623468	5.47119993425608	5.47001912734676	6.04482246250675	6.42213341808344	5.34396912646077	6.36090536182253	0.389275659719194	0.261990546131585	0.573982193095345
Merged-chr1-157560830-3	chr1	157560724	157560924	+	899.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027641, exon 20 of 27)	non-coding (NR_027641, exon 20 of 27)	34654.0	NM_001159986	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	3.44720051462733	3.67533186542471	3.70470840891829	3.6597513437373	3.48808239302817	3.50193536222178	3.31795398646214	3.38776587083005	-0.675020162511514	0.178952115899416	0.474990468665321
Merged-chr5-97007066-4	chr5	97006978	97007178	+	871.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	9389.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	5.26626455581533	4.99331921999662	4.79075123654552	4.73606904788771	4.3505011569045	4.68655152052948	4.34685227311732	4.45962159693208	-1.06236779049081	0.00449060571823417	0.043894098382064
Merged-chr7-28807058-4	chr7	28806944	28807144	+	957.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3846.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	4.58058834194516	4.69708089577257	4.41318213453738	4.22028234114873	4.82017693924213	4.58824442180042	4.30154863275252	4.65466589967928	0.298301996291093	0.439876386357162	0.727441689701829
Merged-chr9-107757566-3	chr9	107757473	107757673	+	728.3222049999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153191, intron 5 of 23)	intron (NR_153191, intron 5 of 23)	13429.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	3.22231558692033	3.30565217821253	3.32501080094859	3.64917850450343	2.49139090673413	2.65387987776021	2.62351778465162	2.70828631569605	-5.53017121396686	5.95200317830632e-07	2.1703772245321e-05
Merged-chr13-97198395-4	chr13	97198294	97198494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010422)	promoter-TSS (NM_010422)	-37.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	7.62033640889749	7.64663794720241	7.5233965162346	7.71742597345512	7.43382680013975	7.6242762373213	7.95871066729754	7.46122693081837	0.000459751585205118	0.998090286585381	0.99910121404386
Merged-chr7-98334155-4	chr7	98334070	98334270	+	975.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12962.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	5.97541741969971	4.90073502461697	6.25262235893787	6.32037778924295	5.47297437552038	5.06404180061324	5.72192509697202	6.05190659478143	-0.552492683471738	0.368212877774814	0.672698966328725
Merged-chr17-31437150-3	chr17	31437033	31437233	+	929.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008804, intron 4 of 18)	intron (NM_008804, intron 4 of 18)	50899.0	NM_001163748	18585.0	Mm.10812	NM_008804	ENSMUSG00000041119	Pde9a	PDE9A1	phosphodiesterase 9A	protein-coding	3.46576785929211	3.38827121463894	4.11756142419642	3.52655181832133	3.1438290901756	3.33247011618579	3.39523361028614	3.40641779305464	-1.13377287316904	0.0448599999115284	0.216446624972716
Merged-chr5-149247749-4	chr5	149247645	149247845	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17259.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	5.54971213444629	4.95792627546352	5.72066723290369	5.72578552608872	5.27797188308747	5.02448880810071	5.64542049767224	5.54675184363537	-0.233100689453567	0.488202482626252	0.76118893988362
Merged-chr4-150864144-3	chr4	150864042	150864242	+	804.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133753, intron 1 of 3)	intron (NM_133753, intron 1 of 3)	9072.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	3.36012715362817	3.48761973419977	3.36060134342482	3.12688584587725	3.24550201401794	3.36157404697868	2.91132032184972	3.18726991688641	-0.551556984074449	0.339189895023783	0.648487712540904
Merged-chr8-70601429-4	chr8	70601338	70601538	+	960.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133772, intron 4 of 16)	CpG	6876.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	4.55733431440958	4.94143269439356	4.60689001832525	4.56387246615171	5.50383397882354	5.38704273462454	5.50332136060001	5.48022165731692	1.514956404128	8.71655400602885e-07	3.09135823415609e-05
Merged-chr15-97817178-3	chr15	97817082	97817282	+	697.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	-2319.0	NM_001204281	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	4.13039007333342	3.66149855455972	3.44016167373211	3.31207451661874	3.30102757360973	3.30454738685787	2.95809518955965	3.37973601734796	-1.46411511152603	0.0176328028082293	0.117517347480052
Merged-chr9-40744416-4	chr9	40744327	40744527	+	963.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-56846.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	6.40985378599506	6.41640225357953	6.24025834367282	5.99433479734075	5.04078863780238	5.17345616253573	5.08336066800521	5.06439283336788	-2.00958239674872	3.05672856893449e-12	3.01350253196936e-10
Merged-chr16-38758693-4	chr16	38758588	38758788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152434, intron 4 of 6)	intron (NR_152434, intron 4 of 6)	16429.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	7.45549576319735	7.21198038642176	7.40816907814061	7.88393700003697	7.38998171568009	7.32233810858189	7.62127749903203	7.48916295001856	-0.0908004069529511	0.669909911639001	0.863713564883384
Merged-chr18-70652351-4	chr18	70652218	70652418	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84026.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	4.82013817105733	4.99241194722735	5.43700912213004	5.40518545629383	5.53128064654791	5.16455680711745	5.69712152698393	5.34901223175883	0.450580980467276	0.171024539617931	0.464153570956064
Merged-chr17-21474875-4	chr17	21474779	21474979	+	869.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-14109.0	NM_013843	24132.0	Mm.42140	NM_013843	ENSMUSG00000057409	Zfp53	D030067O06Rik|KRAZ1|Zfp-53|Zfp118|zfas8	zinc finger protein 53	protein-coding	4.19803933899388	4.3166700827907	4.32951894873715	3.51786283571118	4.49859697404333	4.01450851074241	4.08571982208034	4.48226177014853	0.413520069654855	0.392481555041252	0.691933206965634
Merged-chr11-68657122-4	chr11	68657010	68657210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34805.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	6.13751699700282	5.93866089182448	6.11855492508934	6.18501016968728	6.0305440091667	5.84094894485401	6.16516616600527	6.30140411123057	-0.0115887032571362	0.961817473825949	0.98629351085777
Merged-chr14-79485752-4	chr14	79485657	79485857	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	L1M3|LINE|L1	-4489.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	5.01666128931458	5.48992230833403	5.090654436651	5.42597397367696	5.30861998395503	4.713364264175	5.48326383795685	5.78118159924463	0.174888972977307	0.626995481228431	0.840944250204607
Merged-chr6-56901221-7	chr6	56900967	56901167	+	874.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360963, intron 1 of 9)	intron (NM_001360963, intron 1 of 9)	819.0	NM_001252374	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	2.93555475215946	2.79324568239437	3.12423559373623	3.11421908754966	3.09889866036259	3.11114795505397	3.22284947187417	3.33691904996374	0.743093933393664	0.203995374635919	0.507166844960185
Merged-chr12-110486233-4	chr12	110486123	110486323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081457, intron 1 of 12)	intron (NM_001081457, intron 1 of 12)	484.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	6.43355013987645	7.01890724790466	6.35859283458957	6.47403675341135	6.80423793457104	6.96314821031946	6.87171901559555	6.88912717483946	0.397694737016754	0.0865181664281356	0.320821335325659
Merged-chr19-11061042-4	chr19	11060951	11061151	+	905.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-10485.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	4.46638319646648	4.46285684095925	4.46707456400818	4.58125297755118	4.76304858127773	4.55292795149827	4.643972453319	4.4642783719679	0.256240785689062	0.471074357226278	0.749705558503237
Merged-chr11-23305418-4	chr11	23305310	23305510	+	981.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1485.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	5.86778070265511	5.72829891679542	5.89097186344414	4.79234754909703	6.05266303601116	5.97523756451531	5.51096232445889	5.95086346632827	0.427272732422109	0.222013890255873	0.530047563717821
Merged-chr4-141536764-5	chr4	141536645	141536845	+	811.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 1 of 14)	CpG	1852.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	3.27437351356843	3.60030937920668	3.38233417385844	3.25860669569787	2.97598511308996	2.99516334623775	2.95105061366534	3.27301639942543	-1.31221025110748	0.0270334469928279	0.156440140122154
Merged-chr8-128602104-4	chr8	128601947	128602147	+	899.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83607.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	3.86606160981914	3.75390187817971	3.95698613078329	3.95237969664713	3.71837993745116	3.66538493371809	3.5944500286727	3.48638000062158	-0.802573804194746	0.087427105529471	0.322500722661806
Merged-chr3-109130342-4	chr3	109130253	109130453	+	930.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172685, intron 1 of 9)	intron (NM_172685, intron 1 of 9)	7204.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	4.49697290518862	4.38169154199847	4.21747525995903	4.31689046194128	4.87872881429797	4.71153080394289	4.7048632454372	4.53609923027674	0.815167247881356	0.0227411000320847	0.139325938989822
Merged-chr7-7171293-4	chr7	7171195	7171395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146179)	promoter-TSS (NM_146179)	-58.0	NM_146179	232854.0	Mm.184857	NM_146179	ENSMUSG00000034538	Zfp418	A230102I05Rik	zinc finger protein 418	protein-coding	5.85067400642943	5.29469515904381	5.75967098932975	5.88542341027468	5.77324961634226	5.34418617559218	6.00584561044607	5.54870667181686	-0.0438355769750816	0.884589857001642	0.956626831637064
Merged-chr13-18810198-4	chr13	18810100	18810300	+	907.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	92908.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	4.25677174526222	4.12397965083631	4.06349379521474	4.26377508357158	4.29619507764527	4.38452231042871	4.23862639224958	4.57127328111381	0.457187452630916	0.241294931074033	0.551864658406226
Merged-chr1-191575055-1	chr1	191574955	191575155	+	673.0	f0_balb.idr	promoter-TSS (NM_001306203)	promoter-TSS (NM_001306203)	489.0	NM_029766	76843.0	Mm.189102	NM_029766	ENSMUSG00000037474	Dtl	2810047L02Rik|5730564G15Rik|L2dtl|Ramp	denticleless E3 ubiquitin protein ligase	protein-coding	4.06423536078048	3.62915036590901	4.10929841448797	4.02102923386395	4.16317664008065	4.04327537514298	4.00139827368573	3.75803410761996	0.0981599611252051	0.828068273225849	0.934045475174599
Merged-chr7-100607533-4	chr7	100607433	100607633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163663)	promoter-TSS (NM_001163663)	-53.0	NM_024287	19346.0	Mm.28650	NM_024287	ENSMUSG00000030704	Rab6a	2610028L11Rik|AA419671|Rab6	RAB6A, member RAS oncogene family	protein-coding	7.75659347863909	8.05815093809609	8.01448266962158	7.76576113028653	8.00283004054284	8.05185344107328	7.96283762392238	7.92698323004804	0.110239863034448	0.512045672530298	0.775675608570773
Merged-chr15-82148758-3	chr15	82148665	82148865	+	827.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033218, intron 1 of 18)	intron (NM_033218, intron 1 of 18)	1496.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	3.86116428116162	4.50512061346994	3.68738134242628	3.16230361307499	4.10081955293695	4.09317956159334	4.09068693579353	4.23570938956849	0.578446675417407	0.302583471998856	0.615043376360917
Merged-chr19-5842416-4	chr19	5842389	5842589	+	911.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003513, exon 1 of 1)	non-coding (NR_003513, exon 1 of 1)	2989.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	4.53124517087479	4.33645366242106	4.81404153106869	4.21061708309186	4.32304057882246	4.3484910395615	4.58670224080602	4.44748944736382	-0.113838530379008	0.773977714280731	0.911679349387505
Merged-chr17-27911468-4	chr17	27911381	27911581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	MTC|LTR|ERVL-MaLR	2175.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	5.2001643367914	5.74042514901295	5.23493326247211	5.23762466967259	5.37356168554202	5.4765128947966	5.72101950266053	5.60525977287785	0.303317503258143	0.312501977089291	0.624503852749695
Merged-chr18-39559615-3	chr18	39559494	39559694	+	951.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72349.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.15225282643497	4.57089932427688	4.23618009160951	4.13622592863214	3.59991166868967	3.54436427207039	3.95090272725323	3.56351494343214	-1.74421344113113	0.00034614571287224	0.00569803554498916
Merged-chr19-6126409-2	chr19	6126309	6126509	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026912, intron 1 of 7)	B3|SINE|B2	1806.0	NM_026912	69024.0	Mm.329629	NM_026912	ENSMUSG00000024787	Snx15	1500032B08Rik|E130013C21Rik	sorting nexin 15	protein-coding	2.56676460153899	2.85153947588995	2.71224437060506	2.53673992352574	2.86071992348069	2.88801077161088	3.05809694299849	3.01655160703689	1.34749449020235	0.0327493337103313	0.177388693719479
Merged-chr16-94590478-4	chr16	94590375	94590575	+	964.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	19568.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	4.81871749056501	5.0164892401641	4.92814176130148	5.24701422005851	4.6544592215975	4.70380697531304	4.75879055371136	5.02474944787192	-0.485763547904181	0.154190261558948	0.43939100918826
Merged-chr18-88838359-6	chr18	88838233	88838433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	55874.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	5.20838779310492	4.82094813811437	5.23941224128175	4.93289583799629	5.03956990606702	5.28813336346206	5.15284175723491	5.32195645412377	0.283400192004471	0.366129020240602	0.670716703943013
Merged-chr11-103992849-4	chr11	103992758	103992958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25987.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	6.56350709279544	6.37876145883664	6.59446669964606	6.3653332595415	6.14691725007949	6.26767842020203	6.18529408928537	6.38092169017902	-0.340267020373133	0.125948839774699	0.394223114732801
Merged-chr13-9180463-4	chr13	9180344	9180544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	86563.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	6.79426284080484	6.69100908679702	6.66605538885379	6.3928061296031	6.87567478354014	6.74833772666678	6.74722151718438	6.41090533182866	0.117363181150261	0.600981252241701	0.827051492743764
Merged-chr7-118490758-4	chr7	118490651	118490851	+	884.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033380, exon 1 of 1)	exon (NM_001033380, exon 1 of 1)	1224.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	4.11587165737222	4.65561951461394	4.06288844307602	4.27794050019744	4.20496670603772	4.57123914245618	4.2922500898674	4.7285297632663	0.36633400667827	0.384044732755394	0.685644380524807
Merged-chr13-35783784-4	chr13	35783678	35783878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123386, intron 1 of 6)	intron (NM_001123386, intron 1 of 6)	42376.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	6.53530937816266	6.59348596592128	7.03924836485225	7.05083024085702	6.77123540822729	6.60722838201163	6.70770384205127	6.82177963100063	-0.150496823177428	0.506109703737311	0.77186284286763
Merged-chr4-35130816-4	chr4	35130732	35130932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-21223.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	8.414434847521	8.68321967728905	8.6671961681013	8.37727195106798	8.17376649461436	8.58331397823642	8.13919546575532	8.01287649578368	-0.376532026540857	0.0435377973494774	0.212375060138326
Merged-chr3-41743986-4	chr3	41743909	41744109	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291048, intron 1 of 4)	intron (NM_001291048, intron 1 of 4)	1391.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	5.03045107214764	4.86737639956763	4.62575910781046	4.91014835756559	5.56509219797846	4.94165997562568	5.51237939415391	5.3080853951187	0.924965223876128	0.00469116997089527	0.0453316301056686
Merged-chr1-88228514-6	chr1	88228515	88228715	+	902.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 3 of 41)	intron (NM_001281466, intron 3 of 41)	1595.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	2.7648182697708	2.74414740263733	2.89505757896485	2.66217830542984	2.94089643901353	2.93994541655814	2.94416917860473	3.11946429810081	1.01814023447014	0.0890864528887838	0.325647305053022
Merged-chr1-95665225-4	chr1	95665176	95665376	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 1 of 3)	intron (NM_001159745, intron 1 of 3)	2318.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	5.08472420837722	5.01607703669578	4.59604133112012	5.26260375483618	4.79752363624108	5.0563752998542	4.74520350006627	4.98471858553751	-0.260247957850579	0.454208011397252	0.738062095773103
Merged-chr2-174312321-3	chr2	174312221	174312421	+	850.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310085, intron 2 of 12)	intron (NM_001310085, intron 2 of 12)	14462.0	NM_001310085	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	3.46430941078675	3.23883020200232	3.3019057729638	3.34760970713197	3.35408117811391	3.35453101843394	3.49963875538035	3.0460291810102	-0.0529171078996198	0.921952725487104	0.971037318883215
Merged-chr7-114316595-4	chr7	114316506	114316706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029437, intron 3 of 3)	intron (NR_029437, intron 3 of 3)	-40490.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	5.92213379322051	5.52806623164353	6.13459864818385	6.45812455898119	5.440605713072	5.57307676170298	6.33215918737717	6.39236258047234	-0.0922798299669822	0.792628064909333	0.919627897475503
Merged-chr18-35703118-4	chr18	35703025	35703225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029669)	promoter-TSS (NM_029669)	19.0	NM_029669	76594.0	Mm.108596	NM_029669	ENSMUSG00000024350	Dnajc18	2700075B01Rik|AU041129	DnaJ heat shock protein family (Hsp40) member C18	protein-coding	5.93561521134999	5.69634967840508	5.50014214696181	6.01109934468774	5.7385324384213	5.9742114542243	6.06804925899357	5.77054500949242	0.118501564214384	0.661416452730133	0.859386554615034
Merged-chr16-36711002-3	chr16	36710902	36711102	+	850.1222529999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 3 of 7)	B3A|SINE|B2	17024.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	3.84694116667618	4.25429256015143	3.73109146395408	3.52930437863047	4.21885203227735	4.359434341168	4.16985759343423	4.09785916966544	0.934848657133002	0.0423472003427202	0.208813712336678
Merged-chr19-61084665-4	chr19	61084560	61084760	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 12 of 15)	intron (NM_018869, intron 12 of 15)	56180.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	5.36104650024875	5.26284328629187	5.38992779588414	5.35241990623583	5.06336694338625	5.2540010635429	5.24811120494025	5.14327006276889	-0.31110292834593	0.279197091001078	0.591369431345506
Merged-chr8-77423053-4	chr8	77422956	77423156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 5 of 22)	intron (NM_030113, intron 5 of 22)	-94000.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	7.89730184950709	7.69447734464391	7.81039213308545	8.15328415430226	7.68317157546199	7.57719004904244	7.92265405215453	7.65990143472037	-0.249813035943783	0.184042414017687	0.48125702884897
Merged-chr4-86886300-4	chr4	86886183	86886383	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290543, intron 2 of 5)	intron (NM_001290543, intron 2 of 5)	11869.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	4.89313563903736	4.42871761353836	4.92836252026063	5.41006768119504	4.87074292382852	4.7573456305424	4.6439264159511	4.70334771384888	-0.469251808735284	0.229736946165699	0.538813547740569
Merged-chr19-42110732-3	chr19	42110626	42110826	+	957.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145501, intron 4 of 8)	L1MC4|LINE|L1	18267.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	4.77521517834382	5.01092900061995	4.51742438747678	4.62579208559955	4.11098863698953	4.32227270120866	4.0681888725599	4.51448517526539	-1.11712848121081	0.00511181362872101	0.0482820836357129
Merged-chr2-32452113-4	chr2	32452006	32452206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164357)	promoter-TSS (NM_001164357)	-636.0	NM_146118	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	8.3821670446031	8.62637962399416	8.27878074427035	8.35994241311697	8.30713670356728	8.48493665614489	8.3391621750474	8.23837847320745	-0.0949292366210038	0.558266580596138	0.8030434967081
Merged-chr8-83159124-4	chr8	83159020	83159220	+	856.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6232.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	4.39035476857137	4.64407050112901	4.12830704128525	4.39186830648531	3.99581709066937	3.92110279086841	4.24726645205291	4.02502139822042	-0.888650124687158	0.0341416226316166	0.182411555758835
Merged-chr1-88230045-2	chr1	88229945	88230145	+	912.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 3 of 41)	intron (NM_001281466, intron 3 of 41)	3025.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	3.10879750166948	2.89049008739005	3.21819482819903	2.76409209105919	2.93007125450154	2.89753460871992	2.85042734885847	3.31632680179531	0.0477504673432654	0.939553978990595	0.978198731413863
Merged-chr5-137745927-4	chr5	137745818	137746018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029805)	promoter-TSS (NM_029805)	-51.0	NM_023910	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	6.42524953552822	6.50957199238024	6.09607138885519	6.13834937625794	6.51676561651315	6.51381487182744	6.47576384293108	6.35153551779085	0.254395413151123	0.264635249858608	0.576566406596513
Merged-chr7-45742566-3	chr7	45742492	45742692	+	834.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360784)	promoter-TSS (NM_001360784)	-114.0	NM_001360784	54200.0	Mm.271634	NM_017465	ENSMUSG00000003271	Sult2b1	AI326997|BB173635|ST2B1|SULT2B	sulfotransferase family, cytosolic, 2B, member 1	protein-coding	3.29611236803259	3.25474108436555	3.60086271148502	3.18648280099837	3.83704067591661	3.77484200527848	3.73796816973179	3.97322191088326	1.62154615702738	0.000962047556674697	0.0130408651754996
Merged-chr14-45552382-4	chr14	45552270	45552470	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045809, intron 3 of 6)	intron (NR_045809, intron 3 of 6)	8660.0	NR_045809	67651.0	Mm.55930	NR_045809	ENSMUSG00000115324	4930527F14Rik	-	RIKEN cDNA 4930527F14 gene	ncRNA	4.8705857487119	5.40133849109095	5.57921330419651	5.25055049192453	5.42784523240214	5.12925970333287	5.13903287412887	5.02271601907567	-0.182605127053732	0.575890794917383	0.813239378859725
Merged-chr11-114226775-4	chr11	114226676	114226876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28518.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	5.93737290995311	5.76792486739079	6.05836570408399	5.78470779643254	6.93091230283554	6.32625465485526	6.75289381819521	7.204348001831	1.42504651904112	2.69270051353479e-08	1.31096942443839e-06
Merged-chr11-85518582-4	chr11	85518458	85518658	+	794.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	165394.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	3.8585087434485	3.43676332713267	3.67018009569467	3.70095637882311	3.57193979656074	3.43539870728559	3.3751299753562	3.81210861281154	-0.357788755342001	0.480030933886289	0.75564081252342
Merged-chr4-3640076-3	chr4	3639982	3640182	+	861.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16424.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	3.34042974651415	3.68618972762684	3.47112416239804	3.13029377442619	3.83315541046176	3.71052453544848	3.83018206193934	4.17195578513374	1.50664072454243	0.00312218145979004	0.0329625858983084
Merged-chr3-40745298-4	chr3	40745202	40745402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011020)	promoter-TSS (NM_011020)	-311.0	NM_011020	18415.0	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	7.85281179428981	8.20697451148	8.46008454077263	8.54682941096889	7.97490780892478	8.09276222654516	8.06888117393109	7.99577648397435	-0.34345278729422	0.0762890226476091	0.298263009064823
Merged-chr4-99152355-4	chr4	99152253	99152453	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31438.0	NM_026082	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	4.73446336562212	4.81224976286402	5.10400296633684	5.4647653783269	5.05093965336312	4.87165134039755	5.28360014177912	5.00066746150603	-0.045027197314978	0.900263419875789	0.963041974831885
Merged-chr3-9853268-3	chr3	9853164	9853364	+	800.472229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19585.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	3.02528907086224	2.68699725946386	3.08840595246707	3.17571894338707	3.37218142679593	3.19916755379988	3.07742286625286	3.36124279345224	0.944651075880317	0.129348958224384	0.400249076096744
Merged-chr1-138261689-4	chr1	138261554	138261754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12084.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	6.87436317326561	7.04246002614338	7.1062892258381	7.17388840550965	6.55940480826162	6.70212133394355	6.57543292130648	6.66866471668818	-0.618510741251042	0.00186620069783312	0.0221649089723117
Merged-chr1-97580418-4	chr1	97580302	97580502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	81274.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	6.0208203119121	6.53395909322144	5.63983565246125	6.10750342576558	6.42540761327672	6.26208242320418	5.90037121338719	6.01758067763589	0.08298199150077	0.773191378492107	0.911211873289787
Merged-chr6-142748464-4	chr6	142748360	142748560	+	964.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TGGGGG)n|Simple_repeat|Simple_repeat	-8226.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	4.20140463857501	3.90081199961575	4.24800503180286	4.28416488386722	4.22073539183877	4.23044213337529	4.57789399484864	4.41404360151152	0.467129401156816	0.249293505928702	0.560328612484111
Merged-chr9-65890246-4	chr9	65890167	65890367	+	987.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026515)	promoter-TSS (NM_026515)	-56.0	NM_026515	68026.0	Mm.351273	NM_026515	ENSMUSG00000040204	Pclaf	2810417H13Rik|AA409629|Ns5apt9|Ns5atp9|PAF15|Paf|mKIAA0101|p15(PAF)	PCNA clamp associated factor	protein-coding	5.70183113942197	5.67763133813562	5.49582733584448	5.66176820998223	5.50891491539797	5.49197373581364	5.62557393318127	5.24482866419017	-0.278367345839092	0.305015171759215	0.617502421247634
Merged-chr8-103970180-3	chr8	103970094	103970294	+	968.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131431.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	4.6096007296043	4.47937246113044	5.251937894303	5.10496376414096	4.2103283526107	4.20664367774302	4.37437727368862	4.43738362644623	-1.33104595579934	0.0010882279571289	0.0143949038766917
Merged-chr8-120711373-4	chr8	120711254	120711454	+	919.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	-25004.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	4.16121357524588	3.67045600650213	4.2491578729507	4.42882023923017	4.04752288931902	4.03597306140815	4.14347400873555	4.24645081413636	-0.123851569396764	0.785115442395451	0.916419176427004
Merged-chr1-75190056-4	chr1	75189981	75190181	+	994.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003917, intron 4 of 15)	intron (NM_001003917, intron 4 of 15)	1929.0	NM_001003917	245860.0	Mm.238266	NM_001003917	ENSMUSG00000033124	Atg9a	AU019532|Apg9l1|Atg9|Atg9l1	autophagy related 9A	protein-coding	4.8742339118407	5.01431902166238	4.80346467322449	4.77263843188517	4.60760861958517	4.93916748935216	4.58388358614434	4.76296291158992	-0.294176585929265	0.385580004465153	0.686973965429301
Merged-chr8-84257284-4	chr8	84257208	84257408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026423)	promoter-TSS (NM_026423)	16.0	NM_026423	67873.0	Mm.278085	NM_026423	ENSMUSG00000004996	Mri1	2410018C20Rik	methylthioribose-1-phosphate isomerase 1	protein-coding	5.81553180891292	6.04211559572948	5.21908488612533	5.88597083027683	6.16188956356299	6.53531611215602	6.26193162911495	6.14345166960206	0.769681503145329	0.00643484035339024	0.0571603021981735
Merged-chr7-139131678-4	chr7	139131538	139131738	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021302, intron 2 of 11)	intron (NM_021302, intron 2 of 11)	45637.0	NM_011993	26757.0	Mm.250414	NM_011993	ENSMUSG00000025478	Dpysl4	AI173505|CRMP-3|Crmp3|DPY4|Drp-4|Ulip4	dihydropyrimidinase-like 4	protein-coding	4.55651179243299	4.52169346270467	4.39569424148499	4.46659174422846	4.4230196505676	4.43399278320254	4.33276619511177	4.30398412443471	-0.254043039927102	0.487778632438971	0.761057402147961
Merged-chr13-45903797-4	chr13	45903717	45903917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	61174.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	6.30142281852696	6.69124241726064	6.58541868898992	6.20907867459265	6.01305357580873	6.56806810686407	6.13306456702094	6.13924142565582	-0.348097158845306	0.172865936960278	0.466589227822064
Merged-chr17-17887940-4	chr17	17887812	17888012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008039)	promoter-TSS (NM_008039)	88.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	5.08432865928763	5.53525574272584	5.12094301618796	5.3192177512702	5.56297519548237	5.46078882008451	5.43251150954926	5.28263632771622	0.280135481561413	0.34088022954419	0.65001517089201
Merged-chr4-59862190-3	chr4	59862101	59862301	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 2 of 8)	intron (NM_172468, intron 2 of 8)	52855.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	5.29949190644733	5.04160712061838	5.20139363689457	5.02931015941033	3.88197106545297	4.08286587705889	4.28199651104354	4.01315745305643	-2.54499056685964	4.99500571079559e-10	3.38609058560685e-08
Merged-chr13-49242423-4	chr13	49242326	49242526	+	900.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028340, intron 1 of 4)	intron (NM_028340, intron 1 of 4)	5868.0	NM_001360772	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	4.46460076564876	4.43986373323614	4.61422813101517	4.14027200695016	4.16730181929319	4.22818051142552	4.23198981988902	4.42230186749527	-0.357279060768363	0.372725364525829	0.676451504400639
Merged-chr10-121476425-4	chr10	121476330	121476530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138956)	promoter-TSS (NM_138956)	-180.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	8.49052750380259	8.4046646838885	8.58028558582244	8.23667915758732	8.2524839998743	8.39574578821893	8.31000733807579	8.059588307146	-0.213623473727724	0.20165649006308	0.504156139969769
Merged-chr8-104250892-4	chr8	104250781	104250981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286383)	promoter-TSS (NM_001286383)	20.0	NM_001286383	75458.0	Mm.269219	NM_029295	ENSMUSG00000054400	Cklf	1700001C14Rik|1810018M11Rik|A730028G07Rik|C32|CKLF1|CKLF3|CKLF4|CKLF5|Cklf2|Cklf6|HSPC224|UCK-1	chemokine-like factor	protein-coding	6.49947062844926	6.12875772489178	5.63824418360983	6.48564099117169	6.50208115105533	6.34988130556639	6.65929587320937	6.55851356261201	0.41029273919977	0.128789521901847	0.39929912794893
Merged-chr15-76710589-4	chr15	76710509	76710709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145471)	promoter-TSS (NM_145471)	-32.0	NM_145471	223664.0	Mm.277582	NM_145471	ENSMUSG00000033728	Lrrc14	E130306I01Rik|mKIAA0014	leucine rich repeat containing 14	protein-coding	6.91517227205317	7.17211535106202	6.63445643024182	6.99649028606114	6.99953134021403	7.31146500704124	6.97075972493963	6.80042406804146	0.112350358547653	0.607678328709385	0.830146164578637
Merged-chr11-115474129-2	chr11	115474029	115474229	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001080934, exon 4 of 4)	3' UTR (NM_001080934, exon 4 of 4)	-1538.0	NM_177778	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	3.97168271544332	3.68217848649912	3.4135260176519	3.83954163402126	4.03624292425394	4.04801457784587	3.812297139415	3.87572824313769	0.566795903273987	0.228975625937104	0.537900616657055
Merged-chr7-122067148-4	chr7	122067073	122067273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138589)	promoter-TSS (NM_138589)	-25.0	NM_138589	28018.0	Mm.282122	NM_138589	ENSMUSG00000030870	Ubfd1	AI467302|D7Wsu105e|D7Wsu128e|Ubph	ubiquitin family domain containing 1	protein-coding	7.52367301334678	7.89231599757244	7.55269587338204	7.4860370021692	7.78306001516703	7.67409334978642	7.49717999691715	7.92361165819209	0.142114361119375	0.458886630387797	0.741635063447914
Merged-chr5-123664905-4	chr5	123664820	123665020	+	802.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	19441.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	4.31770910036287	4.67513874107524	4.40773358821755	4.47653787823352	4.57091312261499	4.18910216711785	4.47067606435485	4.48839840444465	-0.0773261080763206	0.838215852257508	0.938633191613918
Merged-chr8-36812573-4	chr8	36812459	36812659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 4 of 17)	intron (NM_001194940, intron 4 of 17)	-79505.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	6.80858464624466	6.38929513711635	7.12063411269279	7.4759572826144	6.53778054071116	6.72217070908547	7.05137363163403	6.67113941679861	-0.370434251237413	0.182315413110387	0.47878218634963
Merged-chr1-88225875-2	chr1	88225775	88225975	+	979.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1145.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	3.28961348780499	3.01317161913873	3.23256237003527	2.96697359514976	3.3748126104	3.22105964432518	3.27708286911076	3.49504153040891	0.852526175135456	0.119310348678154	0.382178628709883
Merged-chr16-94574149-4	chr16	94574058	94574258	+	989.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	3251.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	4.82295603985268	5.64086779201693	5.25556393038138	4.79780430266892	5.14486333922015	5.30297525845567	5.37260084393724	5.42304268870788	0.256710705861112	0.463727688996469	0.744976486222937
Merged-chr18-38997264-4	chr18	38997135	38997335	+	968.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 1 of 21)	intron (NM_001361073, intron 1 of 21)	4090.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	4.71336723575107	5.2077935054842	5.17511403082739	5.09384832686798	5.18075562325936	4.97309268401285	4.85137978547995	4.7936028257427	-0.188677515513163	0.572065948760296	0.811072467668096
Merged-chr17-29986819-4	chr17	29986755	29986955	+	767.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18184.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	2.89492187672374	2.81866924108347	3.21505779950764	2.94706124639044	3.40929643595858	3.14412371360149	3.08495554232929	3.558765656591	1.3147331049581	0.0262048308687493	0.153378312343286
Merged-chr5-86068485-4	chr5	86068427	86068627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2944.0	NM_007683	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	5.52827086108573	5.24700208126097	5.65484610803351	5.56001994634444	5.46626483628364	5.50453841862059	5.42011728420938	5.16083783341727	-0.191904684469061	0.502862066677077	0.770011596334387
Merged-chr11-106429841-4	chr11	106429758	106429958	+	983.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 4 of 21)	intron (NM_023913, intron 4 of 21)	-47077.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	5.7979538200001	5.89002706912841	6.10029628434613	5.47265631465651	5.54344301292965	5.8041496156281	5.10158082141334	5.16053402073317	-0.656500798423476	0.0407814442116681	0.204162499475477
Merged-chr5-44212058-4	chr5	44211980	44212180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173764, intron 2 of 13)	ORR1D1|LTR|ERVL-MaLR	14526.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	6.07217414735928	6.29611286722192	6.48733178356858	6.86281147635567	6.23412245071107	6.08653177841055	6.38857507247842	6.09096875605955	-0.410942133739984	0.122254047652838	0.38741395063409
Merged-chr17-78917965-4	chr17	78917860	78918060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177403, intron 1 of 4)	intron (NM_001177403, intron 1 of 4)	1461.0	NM_001177402	68554.0	Mm.391820	NM_001177402	ENSMUSG00000062691	Cebpzos	1110001A16Rik	CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand	protein-coding	7.1662562123876	6.70164697895412	7.94869267050481	7.95103276819342	7.08497761008062	6.65237374724277	7.59272408116354	7.26321109507193	-0.475669282769567	0.311787377783716	0.623665218229603
Merged-chr5-93195870-4	chr5	93195755	93195955	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017367, intron 2 of 6)	intron (NM_017367, intron 2 of 6)	10640.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	5.18131386270788	5.05341700763255	5.05431767928517	4.93246647355864	5.18584930654665	4.93100591714316	5.18640019016764	5.05089330234104	0.100006203816117	0.744447030359099	0.899296531468148
Merged-chr9-40783301-6	chr9	40783230	40783430	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133733, exon 7 of 7)	3' UTR (NM_133733, exon 7 of 7)	-17943.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.26098716875052	4.38496043647365	4.07822096091815	3.55275261557789	4.12973574208562	4.30053402748513	4.24201328732068	4.17059071732112	0.286633737515071	0.537420870098923	0.791055692304552
Merged-chr10-128499505-2	chr10	128499418	128499618	+	816.125	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_172259)	promoter-TSS (NM_172259)	271.0	NR_131151	654440.0	Mm.441262	NR_131150	ENSMUSG00000097353	A430046D13Rik	-	Riken cDNA A430046D13 gene	ncRNA	4.00119631259818	4.18969360311556	4.29082535169213	4.16633998080328	4.24237401291313	4.4177406840616	4.22795040711773	4.52289446606464	0.46212299931085	0.238338026998546	0.54879281042504
Merged-chr4-124682450-3	chr4	124682347	124682547	+	812.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026031, exon 5 of 8)	exon (NM_026031, exon 5 of 8)	11107.0	NM_026031	67205.0	Mm.259121	NM_026031	ENSMUSG00000028907	Utp11	2700082D03Rik|CGI-94|Cgi94|Utp11l	UTP11 small subunit processome component	protein-coding	3.39728201258107	3.52260822011288	2.95981488496005	3.24873801291658	3.36852041192114	3.27628840315576	3.33047272770051	3.34164872655014	0.117097127552224	0.833099129148392	0.936237948428556
Merged-chr14-70213235-4	chr14	70213129	70213329	+	957.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5558.0	NM_011366	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	4.91347667144532	4.4977490357955	4.97741753866699	4.40808760129495	4.48553493402576	4.71670501664346	4.60297705083192	4.84454099172249	-0.0905799948489073	0.811208571996214	0.926883359837906
Merged-chr12-25089203-2	chr12	25089106	25089306	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR15|LTR|ERVK	6886.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	2.98601613617723	3.23779867461865	2.92981031477136	2.45105367191409	2.64722910475053	2.63464457787115	2.44191430535718	2.807020500492	-1.39867670803481	0.0658265072491444	0.273189024516754
Merged-chr7-64327156-4	chr7	64327059	64327259	+	895.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172742, intron 13 of 15)	intron (NM_172742, intron 13 of 15)	39489.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	4.32351772756583	4.82508943373863	4.41993836437525	4.76423415196558	4.66236482917749	4.40243695821312	4.88822904725723	4.70545563424636	0.133901097745916	0.724334758555172	0.890148891215446
Merged-chr5-108131954-4	chr5	108131859	108132059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028481)	promoter-TSS (NM_028481)	661.0	NM_001347383	73130.0	Mm.363960	NM_028876	ENSMUSG00000063406	Tmed5	3110020O18Rik|4432412D15Rik|p24gamma2	transmembrane p24 trafficking protein 5	protein-coding	6.88773459213163	6.85733160728506	6.71263878286915	7.24152188953571	7.18098272977485	7.01017003181543	7.13422914157312	7.13190842198424	0.219214566365758	0.297888829137003	0.6100652828042
Merged-chr2-84059459-4	chr2	84059349	84059549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118223.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	7.20376845744949	7.21758103257485	7.40646784130041	7.20932797387969	6.99765081982218	7.23119599611185	6.92963635113728	6.94659932016153	-0.314394397177608	0.0966834410497198	0.340599154615259
Merged-chr5-86079462-1	chr5	86079362	86079562	+	544.0	f0_balb.idr	intron (NM_001310639, intron 2 of 7)	intron (NM_001310639, intron 2 of 7)	7716.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	3.46843086952718	3.29202016378252	3.35745587864395	3.37868743138079	3.21499388088658	3.58457326718708	3.55605941701991	3.35570364309978	0.190479071953411	0.713160572271603	0.88527884500467
Merged-chr9-109932650-7	chr9	109932527	109932727	+	825.080933	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205332, intron 1 of 17)	intron (NM_001205332, intron 1 of 17)	853.0	NM_008633	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	3.46689975685006	3.37739820536492	3.17894041322528	3.17031324024304	3.09006921556587	3.47464800778258	3.28961101870244	3.56459433186685	0.224114897364585	0.683273854270273	0.870307072406269
Merged-chr4-139228079-4	chr4	139227966	139228166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	33955.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	6.44304737855985	6.2126548365844	6.25394165861923	6.47351418340709	6.28176351005658	5.88116808256746	5.99886397703424	6.00281584437321	-0.448479626808145	0.0623577279238946	0.264317155262691
Merged-chr19-60889748-4	chr19	60889661	60889861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018869)	promoter-TSS (NM_018869)	12.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	6.2726136884219	6.04816595934836	5.8309220915152	6.01191140456307	5.39276265193463	5.07782572604518	5.4607754414956	5.8267422083714	-0.960865857732154	0.000960592177734021	0.0130285805295217
Merged-chr4-155705562-4	chr4	155705463	155705663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026899, intron 1 of 4)	CpG	748.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	5.70528645745198	6.07262687336432	6.15319389155099	5.50643667975542	5.83747707941836	5.88395896764203	5.94077346808192	6.29067127473033	0.19982859135313	0.484066810711635	0.758242770560542
Merged-chr4-141619110-3	chr4	141619000	141619200	+	959.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145987)	promoter-TSS (NM_145987)	-467.0	NR_151462	213989.0	Mm.34891	NM_145987	ENSMUSG00000043085	Tmem82	-	transmembrane protein 82	protein-coding	3.85239728558118	3.86461711863855	3.8529621855375	3.90415740330108	3.634494194	4.02221250335459	3.73632008674064	3.51926815866377	-0.398760884902096	0.391200823383794	0.691035696926048
Merged-chr16-36531302-4	chr16	36531193	36531393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013803, intron 1 of 6)	intron (NM_013803, intron 1 of 6)	30841.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	5.47515007172129	5.75150829166017	5.56516124523429	6.10648124966495	5.53997985814271	5.62424430117564	6.1895626334237	5.99421564994694	0.149543725013212	0.628247382194427	0.841427212108636
Merged-chr7-140947172-4	chr7	140947062	140947262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153832, exon 12 of 12)	non-coding (NR_153832, exon 12 of 12)	3077.0	NM_053088	73835.0	Mm.389989	NM_053088	ENSMUSG00000025489	Ifitm5	1110003J06Rik|AW213665|Bril|DSPA1|Hrmp1|Hrtm1	interferon induced transmembrane protein 5	protein-coding	7.43962395103108	7.53918903280568	7.16859272812929	7.23431540871809	7.4313368221299	7.47868366184521	7.38512545278794	7.04091020447452	-0.0056156687893356	0.977466366074086	0.991888117862217
Merged-chr6-31314204-4	chr6	31314100	31314300	+	970.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040261, intron 3 of 4)	intron (NR_040261, intron 3 of 4)	84573.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	4.77085244333351	4.82112075260399	4.80995398518135	5.21641274837122	4.84043066097294	4.64704416060321	4.8241846269852	5.07738707996711	-0.165021394017867	0.636969123393673	0.846506358316041
Merged-chr7-3694265-4	chr7	3694188	3694388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029934)	promoter-TSS (NM_029934)	-220.0	NM_024168	66078.0	Mm.379100	NM_024168	ENSMUSG00000035585	Tsen34	0610027F08Rik|Leng5	tRNA splicing endonuclease subunit 34	protein-coding	6.23046565372087	6.55435920860605	5.92825401909566	5.87735137121193	6.2185388192847	6.30788441782693	6.47383912557977	6.30184709126189	0.238084414218493	0.36012784896913	0.665667917361943
Merged-chr11-32558291-4	chr11	32558170	32558370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	MER5A|DNA|hAT-Charlie	25004.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	6.12512133591152	6.75190576117528	5.73523717787586	5.59624608442392	6.10643779481197	6.37796997146975	5.8570609864248	5.46363647791734	-0.217620794740278	0.54049571033419	0.792795047998954
Merged-chr14-101609247-4	chr14	101609142	101609342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081278)	promoter-TSS (NM_001081278)	-51.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	5.85594733147262	5.88482351681261	6.00803464311319	5.97166861680465	5.65419217661751	5.69533750148225	6.01701637497134	5.35439780870103	-0.379096770488367	0.158397128533766	0.445212020688081
Merged-chr10-84774819-4	chr10	84774716	84774916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024918, intron 1 of 17)	intron (NM_001024918, intron 1 of 17)	18768.0	NM_001024918	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	7.1164357030681	7.12376391601594	7.23084844995532	7.4622484555293	7.16713524550501	6.9584457637908	7.35627028405281	7.15915537109817	-0.113064238634106	0.571222025501104	0.810459925004484
Merged-chr6-116679782-4	chr6	116679697	116679897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5961.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	7.69471977170473	7.48895513915001	7.70412919567205	7.87430741152567	7.30097825553884	7.6991166169815	7.89427848422748	7.57135931592042	-0.0986825181543809	0.623290440914152	0.838941930944268
Merged-chr17-12119937-3	chr17	12119834	12120034	+	704.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026644, intron 1 of 8)	intron (NM_026644, intron 1 of 8)	650.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	3.6902341384444	3.27962218304416	3.23556274307254	3.30258332057363	3.43123967971002	3.14910666783917	3.33877409786407	3.10667712796841	-0.415227762794611	0.460645957602174	0.742690917281987
Merged-chr12-36381946-7	chr12	36381808	36382008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289503)	promoter-TSS (NM_001289503)	-239.0	NM_001289503	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	5.22088924442743	5.20561813461977	5.65900759014339	5.46109378252043	5.22991039384436	5.26200070268985	5.16340381070151	5.583860062381	-0.151459141899228	0.617011794030238	0.835291303503194
Merged-chr10-127333359-2	chr10	127333259	127333459	+	715.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010296, intron 11 of 12)	B2_Mm2|SINE|B2	7717.0	NM_001359657	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	2.90989787480593	2.87519430253489	2.77362492134921	2.96159061240082	2.80548033376073	3.25991388631938	3.02255183663665	3.19822862605268	0.79313041023079	0.193486895554769	0.493705692361702
Merged-chr11-3170179-2	chr11	3170084	3170284	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 7 of 32)	MTC|LTR|ERVL-MaLR	23279.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	4.36627987609943	4.62747278984325	4.33139206652521	4.1119101021626	2.97215350247007	3.3252136237119	3.34601663370977	3.27986354504293	-4.70944807560547	5.91974447498711e-09	3.29188665613365e-07
Merged-chr15-12008289-4	chr15	12008160	12008360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-12253.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	5.27813921182041	5.19952542330803	5.14824921485564	5.30097376697927	5.49770646462343	5.06362624780131	5.71235488825438	5.47595573497621	0.400157540069381	0.179738406282103	0.475970088945044
Merged-chr15-97786175-4	chr15	97786044	97786244	+	971.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026353, intron 1 of 2)	intron (NM_026353, intron 1 of 2)	1779.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	4.77696130142505	4.25933453818296	4.64126176121455	4.49190464634516	4.29650500247559	4.48897518869807	4.14862754771247	4.44373681393303	-0.466780166550441	0.231713753166448	0.5412560132789
Merged-chr11-89021688-3	chr11	89021623	89021823	+	955.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	22320.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	4.16944638824434	4.09164438956932	4.04448877999974	4.21546600064364	3.73880739267297	3.81154507714563	3.55847574666251	3.36564926332069	-1.47673478271549	0.00228953431932783	0.0259666608214525
Merged-chr9-70783408-4	chr9	70783313	70783513	+	802.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	104431.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	4.23119990943268	4.68515463800168	4.04280721894686	3.92590353757729	4.06916061017814	4.00411914804518	4.02584616977931	4.31407413297851	-0.358399181881977	0.429751161085619	0.720595003413741
Merged-chr5-125363495-1	chr5	125363395	125363595	+	744.5	f0_balb.idr	Intergenic	Intergenic	-22401.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	3.75128232071347	3.24693406518957	3.62129786495281	3.44162999694379	3.15087563300708	3.21775443787656	3.29038133038895	3.52186387453638	-0.806519628628103	0.146077871149239	0.426029533333265
Merged-chr17-45478660-3	chr17	45478562	45478762	+	857.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3724.0	NM_001357831	71020.0	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	3.45010516249375	3.38272077780678	3.33039274874791	3.73338454255812	3.57409884103602	3.50519557983257	3.7387613195765	3.50482944138925	0.269691218289193	0.601146938656387	0.827071740947179
Merged-chr3-87619292-4	chr3	87619194	87619394	+	944.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360197, intron 1 of 38)	intron (NM_001360197, intron 1 of 38)	1735.0	NM_001360195	213498.0	Mm.287267	NM_001003912	ENSMUSG00000041977	Arhgef11	PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding	4.10153644733755	4.69227581431047	4.51926944387552	4.24673474491434	4.16187169126763	4.43326325065119	4.71370547030027	4.55526783471836	0.159597125315309	0.697766871925094	0.87800480308191
Merged-chr17-47795627-4	chr17	47795509	47795709	+	858.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9865.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	3.89293021444982	3.79353801349405	3.99553027603183	3.9505105687874	4.00685406937666	3.9043319559279	4.55210153659088	3.99314197793	0.603640298159202	0.176658894877308	0.471860639217102
Merged-chr11-22842591-1	chr11	22842491	22842691	+	762.5	f0_balb.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	17144.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	4.09825759411311	3.96330332643515	4.22014209566649	3.82732280823634	3.9351418439813	3.88073118918175	3.50734675072745	3.70198928460508	-0.720023666626905	0.129450924635208	0.400360889731452
Merged-chr7-126949938-4	chr7	126949820	126950020	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252567)	promoter-TSS (NM_001252567)	-338.0	NM_001361488	233879.0	Mm.444143	NM_001039645	ENSMUSG00000046378	Asphd1	A830007L07Rik|Gm168	aspartate beta-hydroxylase domain containing 1	protein-coding	5.01065434301311	5.1667072441608	4.78760796411972	5.30764675602144	4.97508174516094	5.00267845357738	5.17718218014175	5.00812182212178	-0.118096917765447	0.71560340111772	0.886328547107336
Merged-chr2-85027435-3	chr2	85027352	85027552	+	860.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145526, intron 1 of 11)	intron (NM_145526, intron 1 of 11)	8382.0	NM_145526	228139.0	Mm.440375	NM_145526	ENSMUSG00000027071	P2rx3	4930513E20Rik|P2X3	purinergic receptor P2X, ligand-gated ion channel, 3	protein-coding	3.62774421235867	3.5920484785758	3.92346188665183	3.88344389858236	3.54114272523554	3.28465640972776	3.86153324684828	3.87638166695611	-0.319697491489032	0.536238579632205	0.790269275097008
Merged-chr10-12842702-4	chr10	12842581	12842781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 1 of 73)	intron (NM_011682, intron 1 of 73)	19054.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	5.24975302288984	5.65864273042511	6.07781985695528	6.3120656817561	5.44632785746542	5.20639164047551	5.73693145577979	5.4426586817339	-0.712632615079835	0.0354597989205435	0.186934602625335
Merged-chr13-98868724-3	chr13	98868619	98868819	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 7 of 23)	intron (NM_178716, intron 7 of 23)	22323.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	4.66281982718513	4.8727547078871	4.66366558242128	5.16451881422486	3.21646448957639	3.48090865616653	3.42307730841447	3.72561702947867	-4.9078914933616	1.51314721273903e-11	1.32968278340187e-09
Merged-chr7-101617081-2	chr7	101617038	101617238	+	747.0	f0_balb.idr|f0_c57.idr	Intergenic	MLTR11B|LTR|ERVK	-35977.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	3.76512075899538	3.93833056951604	3.65892062087429	3.34031505657083	3.86728700601659	3.72040713453927	3.74996807108358	3.90837995093633	0.396913808348902	0.417336374717369	0.711136307000087
Merged-chr16-59570970-2	chr16	59570876	59571076	+	688.25	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15224.0	NM_174848	224273.0	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	2.60359482681361	2.61730174600822	2.60381476352742	2.41741096034069	3.50149618468008	3.10270277009322	3.26772881750523	3.80177755702666	4.27207012945422	1.5295192743534e-08	7.82671836299071e-07
Merged-chr1-64600844-4	chr1	64600749	64600949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009952, exon 9 of 9)	3' UTR (NM_009952, exon 9 of 9)	16319.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	5.53727969384052	5.25533043397216	5.03617301778949	5.65620924669012	5.29822105528241	5.42420949970002	5.63271811965301	5.39770087557917	0.0502081657606879	0.870700107765423	0.951430072143722
Merged-chr6-120155641-4	chr6	120155532	120155732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-38191.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	6.92147761841613	6.76945148465783	6.55381636838457	6.66635920046061	6.83631759586671	6.79785489382489	6.94972118793885	7.07377263514303	0.262914127932749	0.197576557549812	0.49895982014778
Merged-chr1-71557105-4	chr1	71557003	71557203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026195)	promoter-TSS (NM_026195)	-53.0	NM_026195	108147.0	Mm.38010	NM_026195	ENSMUSG00000026192	Atic	2610509C24Rik|AA536954|AW212393	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding	8.50116030223581	8.5961348866518	8.78762350412207	8.91355304517705	8.45947296537779	8.57586005438963	8.81365081146371	8.52180807596334	-0.146624064287245	0.393341264399436	0.692447094058087
Merged-chr8-35379371-4	chr8	35379276	35379476	+	994.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177741, intron 1 of 1)	intron (NM_177741, intron 1 of 1)	3635.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	4.69026347232829	4.95729530169897	4.84725747261022	5.37814602890571	4.64581654113611	4.64659879594667	4.92904299383472	4.9154545908092	-0.462357055311122	0.205329170705404	0.508859472252119
Merged-chr17-5830155-3	chr17	5830053	5830253	+	928.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11227.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	3.6584161181711	3.61438185379627	3.60542888090275	3.99869573885204	3.76630327599998	3.54393615872019	3.64439735986346	3.48961120791356	-0.381917894213348	0.443384121992486	0.72990713266033
Merged-chr17-83527871-4	chr17	83527774	83527974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-13541.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	6.11160217856574	5.76442743913169	6.02908930855798	6.15931374951882	6.3299049104483	5.89051455617768	6.12099529814557	6.18662630435535	0.185402400349089	0.457838643396058	0.740862073979297
Merged-chr19-9986073-8	chr19	9986010	9986210	+	865.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010239)	TTS (NM_010239)	3464.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	4.02149736455877	3.81060610845515	3.83720353545347	3.50099649279541	3.67569793305245	4.18986390304232	3.42179695817939	3.73155223865908	-0.0491289417678287	0.924050998016393	0.971898050418734
Merged-chr16-92445615-4	chr16	92445513	92445713	+	812.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	B3A|SINE|B2	20556.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	3.91912482571046	3.67351461482414	3.63363037566325	3.37825868694749	3.61397829897509	3.38064650631137	3.85864474373957	3.57707768921544	-0.109092981308883	0.831980944339811	0.935671290344021
Merged-chr9-107975434-4	chr9	107975315	107975515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023738)	promoter-TSS (NM_023738)	-152.0	NM_023738	74153.0	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	6.38870279336156	6.61644793650108	6.77465079389617	6.62838621042253	6.70461507579325	6.54859896519015	6.89517309631948	6.59217892775777	0.12009374956178	0.575022950173535	0.812723309116222
Merged-chr5-151142400-4	chr5	151142301	151142501	+	908.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153382, intron 1 of 13)	intron (NR_153382, intron 1 of 13)	47792.0	NM_001163493	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	4.39680059109378	4.76415847084639	3.97617322210833	4.26906837147708	4.99424539651568	4.61673398817605	4.65780871136409	4.3947299649972	0.683966305094665	0.101552032535348	0.349652789814422
Merged-chr17-15830902-4	chr17	15830813	15831013	+	961.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4327.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	4.80809122245391	4.39605714995123	4.33308489712529	4.61435550026644	4.71612551811111	4.5098564047519	4.36109063745527	4.70251026381899	0.0717672001328681	0.848237136153831	0.942625689889496
Merged-chr1-33901891-4	chr1	33901791	33901991	+	908.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	Lx9|LINE|L1	5730.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	4.68516290141219	4.70334832112731	4.60757771738536	4.465327251472	4.87914403639942	4.65586865985697	4.77196589585425	4.43221186995389	0.206848520589663	0.56086882682246	0.804760543341901
Merged-chr11-115765387-4	chr11	115765295	115765495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028014)	promoter-TSS (NM_028014)	-38.0	NM_028014	71947.0	Mm.23168	NM_028014	ENSMUSG00000020747	Tmem94	2310067B10Rik|Kiaa0195|mKIAA0195	transmembrane protein 94	protein-coding	7.0007627247142	6.94579747903959	6.68481092525775	6.59123805274059	7.01712251090608	7.45031108100666	6.3129143583026	7.00915147970727	0.272035702238538	0.310329517375176	0.622504360197487
Merged-chr6-127359512-4	chr6	127359445	127359645	+	908.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51578.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	4.10369830832175	4.21403130175381	4.19773504556077	4.40093049726665	3.859462703767	4.07310158469671	4.22301403140323	4.36338884284221	-0.276155626360716	0.512817431201677	0.776017039843318
Merged-chr13-42829102-4	chr13	42828965	42829165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005740, intron 1 of 12)	intron (NM_001005740, intron 1 of 12)	-37182.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	8.02569770666103	8.1052621706191	8.01345287790192	8.14522010577286	8.09063173075534	8.06182546278959	8.31282665902182	8.14976629622208	0.100858277547027	0.523636671574311	0.782596368495946
Merged-chr17-56269345-4	chr17	56269248	56269448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_174989)	TTS (NM_174989)	7419.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	7.42262695214228	7.30211347066772	6.70876149096247	7.38316939279844	7.58609935597639	7.75360936373739	7.18009539475832	7.43773019979257	0.355992007692145	0.121094867510466	0.385362881679593
Merged-chr2-19048405-4	chr2	19048310	19048510	+	878.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50091.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	4.12116718771726	3.60286016528422	3.49561728862533	3.8446425478728	3.6703287856183	4.01890591215087	4.10250984731589	4.03377970803097	0.482239719441273	0.321559413146022	0.633215694929564
Merged-chr6-114268919-4	chr6	114268830	114269030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13705.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	5.7399052166523	6.24302290515299	5.89429156319004	6.33844457011702	6.02717788137386	5.83663266054046	6.37000439901863	6.18889248948315	0.0387317493101989	0.887178974904498	0.957666791297499
Merged-chr17-67448236-4	chr17	67448153	67448353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93762.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	5.38625978937898	5.29384515055223	5.76700058518329	5.79259659266831	5.25016299667177	5.26849282581236	5.30031787951388	5.44115984704909	-0.485193428636913	0.102416606163806	0.351524629082058
Merged-chr4-132049258-4	chr4	132049182	132049382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128606)	promoter-TSS (NM_001128606)	-204.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	6.4916517587356	6.4990612868409	6.59092988261226	6.55039321937965	6.75492086625344	6.56339806356463	6.75927913032389	6.40017729163494	0.145390414217501	0.491955474482233	0.763262787218927
Merged-chr13-81222049-4	chr13	81221962	81222162	+	963.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	L1_Mur3|LINE|L1	257988.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	5.22880962534697	4.70882437486964	4.86005235960381	5.0984059924867	4.78325896339828	4.66907609319566	4.87175632697455	4.43777403049876	-0.58993841354594	0.0967807489878483	0.340757663840822
Merged-chr7-101108456-4	chr7	101108358	101108558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146010)	promoter-TSS (NM_001146010)	-317.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	7.8805986658901	7.68955443429681	7.35291017184366	7.52677222382363	7.76048806236356	7.85207528280726	7.73330187001901	7.81130879156127	0.216662479165635	0.236452399716505	0.546531753837347
Merged-chr19-24995042-4	chr19	24994930	24995130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4499.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	5.41860866032858	5.32423020497516	5.04521222628556	5.51782424137125	5.65114123829591	5.80930625137139	5.70285653183102	5.60718550101491	0.576221293071277	0.0412312404274053	0.205446164674993
Merged-chr12-103434185-4	chr12	103434073	103434273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026790)	promoter-TSS (NM_026790)	-16.0	NM_026790	52668.0	Mm.2121	NM_026790	ENSMUSG00000064215	Ifi27	1110013J02Rik|2900026P10Rik|D12Ertd647e|ISG12a|Ifi27l1	interferon, alpha-inducible protein 27	protein-coding	7.13410020190157	6.91456486811485	6.23618962723207	6.90922409454473	7.0900854929984	7.01354704273824	7.16395012114215	7.0264707932246	0.321880890961689	0.170786332593492	0.463994222074314
Merged-chr17-35236489-4	chr17	35236392	35236592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023179)	promoter-TSS (NM_023179)	-104.0	NM_023179	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	6.11499810341157	6.27092645909232	6.13613377823107	5.86092596373537	5.9775849166205	6.04854243211447	6.08480224449924	6.17088852120756	-0.0339409117275198	0.888993158949084	0.958420116257639
Merged-chr16-94713904-4	chr16	94713796	94713996	+	873.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102477.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	4.45652493631075	4.7479245943833	4.61114104322193	4.21601364685255	4.03088849138447	4.26063234925429	4.39543077472502	4.4128279171331	-0.559804143387536	0.171067099574269	0.464162889513089
Merged-chr17-6793665-4	chr17	6793626	6793826	+	859.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10946.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	3.38345882156142	3.35686320155323	3.26911062786662	3.5191926688083	3.37759341051712	3.18424421196433	3.52365269692598	3.26751681548019	-0.164992188325716	0.755799196164879	0.90396946807064
Merged-chr13-60683493-4	chr13	60683340	60683540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	81229.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	6.31055776453656	5.71054718525361	7.17765713837421	6.82315776869646	6.81327168841785	6.38760622740983	7.05837283424924	6.90376643739528	0.274102734592016	0.57587394633848	0.813239378859725
Merged-chr17-83397879-4	chr17	83397786	83397986	+	826.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357886, intron 1 of 21)	intron (NM_001357886, intron 1 of 21)	46955.0	NM_001357886	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	3.88254946351317	4.15270195651342	4.55514266241787	3.94132580809697	4.34558054269755	4.06062905661139	3.9210865653028	3.76600516216844	-0.266441243267128	0.575387785555838	0.813026770185778
Merged-chr5-63968436-2	chr5	63968336	63968536	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145923, intron 1 of 6)	CpG	461.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	4.54375828975605	4.59416673607005	5.20165867740781	5.04368351116396	5.00315831736262	4.93940480246732	4.96012740934491	5.19801206132864	0.28219140481683	0.424657800558256	0.716342477702877
Merged-chr7-83809886-4	chr7	83809774	83809974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15035.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	6.31602524161678	6.37361390988239	6.64706325388066	6.52918257649877	6.35428769104894	6.5121788977888	6.56906369627307	6.10852263490648	-0.117765274458619	0.607890932139986	0.830283203337722
Merged-chr17-87055062-3	chr17	87054984	87055184	+	965.644409	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29523.0	NM_019936	56724.0	Mm.109329	NM_019936	ENSMUSG00000024146	Cript	1200020A08Rik|AA589469	cysteine-rich PDZ-binding protein	protein-coding	3.64914301211586	3.39773811758612	3.58435252645568	3.2140828081964	4.1685977101377	4.21541772872774	4.80785103793679	4.33390597590337	2.69302553992908	1.50151223555004e-08	7.70001004425191e-07
Merged-chr10-111986630-4	chr10	111986542	111986742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028608, exon 4 of 6)	exon (NM_028608, exon 4 of 6)	10622.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	6.35248824049756	6.28378813269509	6.24181982243644	6.63919686588927	6.34630475850165	6.29614695664497	6.06641859564283	6.33112687588695	-0.207520206049398	0.37857987728547	0.681182628403749
Merged-chr9-7595405-4	chr9	7595305	7595505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24009.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	7.33961691698807	7.40295832648487	7.72366501801884	7.81902123276733	7.54209141725906	6.99872951310154	7.46941004524031	7.29342414021853	-0.326408613088318	0.127140392974531	0.396656849946709
Merged-chr13-99196437-4	chr13	99196365	99196565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	11642.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	5.75877796418513	5.84933658265047	6.33807178370003	6.52580566004507	6.04661787761635	5.54884635288497	5.8777905837205	5.993619088835	-0.447967005752739	0.131631347797763	0.403958151145899
Merged-chr3-116712238-4	chr3	116712133	116712333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362374)	promoter-TSS (NM_001362374)	47.0	NM_144902	229782.0	Mm.190758	NM_144902	ENSMUSG00000027957	Slc35a3	2310050P13Rik	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3	protein-coding	5.93678203034641	5.99428624790114	6.27574433661223	6.20079139403316	5.91077390337608	5.72003158832878	6.03672899436913	6.00017897904179	-0.299958876755332	0.222839697972068	0.530983202865467
Merged-chr18-9506065-5	chr18	9506014	9506214	+	840.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55960.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	3.99941923661339	3.38514909897099	3.86989852758074	3.70923281643442	3.56178471620187	3.79136859628807	3.48891136328056	3.67026414572095	-0.383341794259994	0.445765967528212	0.731683687961799
Merged-chr7-24387384-4	chr7	24387300	24387500	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12228.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	5.74330353635351	5.44202799959604	5.15695337105587	4.83010191613956	6.6749540945987	6.84933645311706	6.2942077088417	6.18170160745424	1.92354212180426	5.72285972509942e-10	3.84652910644808e-08
Merged-chr11-109367040-4	chr11	109366938	109367138	+	916.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-3384.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	4.43619991029487	4.87107881732471	4.23588581012447	4.28912345176271	4.88572777742315	5.03977104382579	4.74215942138186	4.76194499767989	0.815914695665481	0.0294419090843002	0.165175796043624
Merged-chr1-45868893-4	chr1	45868788	45868988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56706.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	6.6072539989422	6.5305665459405	6.91736051452226	7.12460053323368	6.41935379194536	6.78508515925172	6.40527263755808	6.65056043041234	-0.374826571986447	0.118793027038688	0.381328081157516
Merged-chr3-39268980-3	chr3	39268868	39269068	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	382028.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	3.73491461651474	3.7271071037192	3.89091748149871	2.65879895138492	6.18554590727788	6.15184090607828	5.75962891234611	5.84500683108181	6.84934182201114	1.51134327866264e-32	2.24116465066517e-29
Merged-chr17-50130539-4	chr17	50130445	50130645	+	980.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	59952.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	4.92322245639892	4.7366202944287	5.05578028288559	5.1740158801044	4.79034584721547	4.91275777768072	4.93426924794807	4.56314504478239	-0.37699704861234	0.268262515161224	0.580076430005696
Merged-chr7-96849133-3	chr7	96849029	96849229	+	983.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 22 of 32)	L1MA5A|LINE|L1	-47580.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	5.05628957449402	4.52028967016934	5.7951557828964	5.83736206068439	4.1417855336399	4.22158441798948	4.24549038814494	4.14436256206653	-2.63013823084904	1.28008712027723e-08	6.66534902225405e-07
Merged-chr1-182959355-4	chr1	182959253	182959453	+	944.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016928, intron 1 of 3)	intron (NM_016928, intron 1 of 3)	4565.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	5.37118492968974	5.07183692222084	5.00462890639272	5.0737840263648	5.21760331811058	4.77353317296611	5.14548305617356	5.22816974079369	-0.0394369972324412	0.901239751931451	0.963342914941175
Merged-chr3-27291601-4	chr3	27291496	27291696	+	947.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-25481.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	5.43467876001003	5.12915025614681	4.77383514584898	4.31799159281859	5.42357768671536	5.44401096018869	5.27268304288382	5.20652031056226	0.696600246420043	0.0665035154374045	0.274860859674777
Merged-chr15-6390872-4	chr15	6390725	6390925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	4077.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	6.01462715240279	5.3470154671011	6.10820211154668	6.05606859312253	5.22162027962095	5.42570495111152	5.35173045742788	5.49594657174835	-0.923756160155566	0.00226412007951297	0.0257449269202612
Merged-chr13-113616628-7	chr13	113616449	113616649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	2015.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	5.1150134808873	5.34347618682819	5.86004631105246	5.50990141660282	5.24128104285849	5.29671685757892	5.9291530289589	5.70103788475425	0.145293774848187	0.66035009771984	0.858817094931491
Merged-chr9-100644234-4	chr9	100644131	100644331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009282, intron 1 of 33)	CpG	783.0	NM_001357265	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	5.85091435225571	6.24947343622695	6.47232442383709	5.9812221076461	6.06258887406343	6.21384030613273	6.12990349919982	5.82253219024654	-0.137538031616471	0.598699219191794	0.826032626658132
Merged-chr8-14090437-4	chr8	14090335	14090535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034862)	promoter-TSS (NM_001034862)	-108.0	NM_001034862	234086.0	Mm.268896	NM_001034862	ENSMUSG00000051978	Erich1	-	glutamate rich 1	protein-coding	9.1972913368341	9.1974426751401	9.29093930112837	9.32054175812119	9.07106796646274	9.2222096680086	9.24195614324681	8.92918090667304	-0.164281810418261	0.262061399005711	0.57408803151014
Merged-chr19-12501045-3	chr19	12500932	12501132	+	983.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172442, exon 1 of 9)	exon (NM_172442, exon 1 of 9)	964.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	4.06505440000736	4.15599087881627	4.27662596777322	3.82277516296064	3.56912864477861	3.87804214553699	3.74179249144291	4.27375523331234	-0.534066707089378	0.269014972071409	0.580600870135562
Merged-chr17-50470636-4	chr17	50470523	50470723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38924.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	6.55956306599451	6.78662799884141	5.87632108540995	6.31887820396715	7.07150194332579	7.00903215582798	6.09322509372687	6.53988344989957	0.450375764997845	0.14119483880431	0.418005549692302
Merged-chr1-164586318-4	chr1	164586222	164586422	+	880.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	83015.0	NR_151593	102635083.0	Mm.98705	NR_151593	ENSMUSG00000097281	Gm26685	-	predicted gene, 26685	ncRNA	4.50407609757037	3.96611727958436	4.2223230884915	4.58368499078944	3.90969648188042	4.09787582141026	4.29004014505791	4.1737513802162	-0.579082429500691	0.183077496771817	0.479931757527872
Merged-chr9-108095785-4	chr9	108095691	108095891	+	764.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007567)	TTS (NM_007567)	-1311.0	NM_146226	235606.0	Mm.219639	NM_146226	ENSMUSG00000032590	Apeh	-	acylpeptide hydrolase	protein-coding	4.35904344169996	4.02053291955675	3.95413413759943	3.75258945142151	4.50144312473987	4.02331289576188	3.98927218334545	4.23563408145692	0.476761025466211	0.290648293610035	0.602869066641471
Merged-chr11-31817624-3	chr11	31817471	31817671	+	911.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_102310)	TTS (NR_102310)	6976.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	3.79904362241904	3.55649207691409	3.7561198872441	3.66099990465518	3.17908526264212	3.324743297519	3.06148019075757	3.33826712705369	-1.69183341099162	0.00216487657297014	0.0248601288429588
Merged-chr15-102203510-4	chr15	102203389	102203589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289694)	promoter-TSS (NM_001289694)	-156.0	NM_001289694	68744.0	Mm.352945	NM_153194	ENSMUSG00000046897	Zfp740	1110034O07Rik|AW548228|Znf740	zinc finger protein 740	protein-coding	7.08526772653354	7.29907304783112	7.00970795967625	6.96948924831781	7.47604118053482	7.66375270965161	7.59409529699355	7.33870306445768	0.577926311062884	0.00229930462689698	0.0260484170042814
Merged-chr13-102895051-4	chr13	102894941	102895141	+	929.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	134786.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	5.21004320836632	4.74661096445007	4.67444922097727	5.09543291054411	4.96132135971888	5.00483722933182	4.32682115207473	4.75214097515479	-0.331539352027356	0.38021095745287	0.682634272683511
Merged-chr6-31804589-1	chr6	31804489	31804689	+	1000.0	f0_balb.idr	Intergenic	IAPLTR1_Mm|LTR|ERVK	-138458.0	NR_152155	434003.0	Mm.332979	NR_152155	ENSMUSG00000084973	Gm13848	-	predicted gene 13848	ncRNA	3.29096957355543	3.62515166423695	3.84219182301581	3.12221876136163	3.29228211820785	2.92599281840421	2.95946985882303	2.81363675515498	-1.84737891392957	0.00804949361366973	0.0675017561177424
Merged-chr2-84296554-4	chr2	84296458	84296658	+	936.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	128708.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	5.03342352824612	5.11717716763821	4.62073140949395	4.93764510310025	5.12340227669919	5.07186243137066	4.76447591927086	4.5728544772857	-0.0636005793066792	0.856964729076955	0.946159157665131
Merged-chr14-121422114-4	chr14	121422024	121422224	+	944.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42894.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	4.61357064656091	4.10591953958857	4.75477839068238	4.90770879927491	4.52021677559657	4.07424806114711	4.47680321116261	4.22401004591357	-0.666621286529898	0.121198059189157	0.385433406865215
Merged-chr18-60804337-3	chr18	60804226	60804426	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042605, intron 1 of 8)	B1_Mm|SINE|Alu	477.0	NM_010545	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	3.74628662191739	3.86479754600274	3.74684597216159	2.45491125132183	6.33247940658713	6.59232982142301	5.70964709921292	5.83885900705906	6.7662995632737	3.29780535062917e-06	0.000102459400721272
Merged-chr2-153711023-2	chr2	153710923	153711123	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30264.0	NM_007896	13589.0	Mm.143877	NM_007896	ENSMUSG00000027479	Mapre1	5530600P05Rik|AI462499|AI504412|AW260097|BIM1p|D2Ertd459e|Eb1	microtubule-associated protein, RP/EB family, member 1	protein-coding	3.05985877356332	3.12332272208825	3.12336958584155	3.03671522781088	3.01843709252836	3.17134373519549	3.282802830306	3.53842798489438	0.683755827426798	0.224168339815939	0.532348388875279
Merged-chr2-156417416-4	chr2	156417312	156417512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3497.0	NM_001291122	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	5.72899497774467	5.83302417423735	6.02599856734146	6.14329932760614	5.68307275697739	5.74378581044221	5.82246308569442	5.82455966391655	-0.31017142879465	0.22746761997159	0.536123103376086
Merged-chr7-16913942-4	chr7	16913840	16914040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7450.0	NM_008967	19222.0	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	5.33996674095955	4.75173784304887	5.10758335942288	4.94434439150554	5.00515043792731	5.11141697779644	5.11389417621352	5.00419342018724	0.029400566471251	0.927534114723702	0.973537659073704
Merged-chr7-27195813-4	chr7	27195712	27195912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243888)	promoter-TSS (NM_001243888)	31.0	NM_001243888	414069.0	Mm.379069	NM_001243888	ENSMUSG00000078786	BC024978	-	cDNA sequence BC024978	protein-coding	6.73561871793243	7.02715535434058	6.49055503297267	6.65052732226375	7.01359954126197	7.0540530188209	7.02761563868977	6.76147493205075	0.322404432180348	0.133487667183507	0.406812753145011
Merged-chr15-27234949-3	chr15	27234834	27235034	+	993.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-231743.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	4.36214077503731	4.32290230750606	4.13383489948315	4.58398077263114	4.199151187726	4.03966632008846	4.56996550377804	4.22780449640454	-0.242419098680382	0.557869133985289	0.802921439177142
Merged-chr4-118083785-4	chr4	118083690	118083890	+	898.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285520, intron 2 of 11)	intron (NM_001285520, intron 2 of 11)	51156.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	4.4137303913708	4.84257134080807	3.96400691397601	4.4331716599515	4.02869415822355	4.62804582386928	4.43541018388284	4.36857712464661	-0.17682014910114	0.688795022140679	0.872980495973815
Merged-chr14-50838207-4	chr14	50838113	50838313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 35 of 54)	intron (NM_009351, intron 35 of 54)	30297.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	6.34081390024004	6.38624220654611	6.07620079456751	6.44426403489087	7.1514557992861	6.96961188428845	7.4076628419799	7.17131679088208	1.20343715594732	2.62372429123922e-08	1.2808921215783e-06
Merged-chr4-148102377-4	chr4	148102315	148102515	+	763.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027426, exon 7 of 7)	3' UTR (NM_027426, exon 7 of 7)	-14351.0	NM_001301281	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	3.49473105945171	3.32094790215734	3.74578445084137	3.6322719635901	3.32387452983608	3.49347246370255	3.5351540171906	3.54743110788016	-0.288840298803396	0.570534639891395	0.810152119115078
Merged-chr9-13668978-4	chr9	13668890	13669090	+	842.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	6530.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	4.02504611615601	4.1036900181831	4.28778704293583	4.33978812207018	4.10453142860762	4.09879019236901	3.80101048741689	3.69461698256861	-0.687256302218084	0.122562678321099	0.388021566526599
Merged-chr6-134094772-4	chr6	134094639	134094839	+	890.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	59039.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	3.83148975134365	3.95191299762144	3.78255972201612	3.95945269033229	3.75717959093161	3.48472727163619	3.55044789458364	3.82978906749243	-0.658591101072942	0.162769223328021	0.452255606647826
Merged-chr10-34215848-3	chr10	34215731	34215931	+	825.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8280.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	3.27913345018694	3.32230957954377	3.27953750545656	3.08686048494826	3.5763636728425	3.32967001112118	3.5388733871292	3.60051076705618	1.00239537647134	0.0506724778617564	0.23339651366127
Merged-chr11-107124626-4	chr11	107124527	107124727	+	926.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359590, intron 1 of 27)	intron (NM_001359590, intron 1 of 27)	7295.0	NM_176850	207165.0	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	4.73218067170847	5.09496119287638	4.73294986000486	4.73627305221357	4.67958200628799	4.61429168946226	4.59277460780997	4.69140464933967	-0.390568846617116	0.25886247910998	0.570627822873004
Merged-chr13-94711504-4	chr13	94711409	94711609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-77434.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	5.47035107287756	5.55271117680312	5.9748649444682	5.98909530598422	5.3839693219743	5.49377636813798	5.35312824212447	5.80185144902914	-0.442841459343798	0.135195040523716	0.409349593042737
Merged-chr15-79544750-4	chr15	79544644	79544844	+	907.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040187, intron 1 of 12)	intron (NM_001040187, intron 1 of 12)	1815.0	NM_199079	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	3.61522395033515	4.16529102655598	4.08747012155547	3.72403146583451	4.26103436299286	3.85623942059926	3.72186567356006	4.08488897678862	0.248884798022733	0.605117566713445	0.828698063423653
Merged-chr12-3409206-4	chr12	3409109	3409309	+	847.854126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	intron (NR_030694, intron 1 of 2)	17538.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	3.63836925394553	3.93606297057604	3.94508794314428	3.67454130681954	3.89890374768775	3.6350712791748	4.05531782877977	3.5782066447651	0.030283862783614	0.949424437059695	0.981872090911877
Merged-chr5-137830393-4	chr5	137830284	137830484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153510, intron 3 of 6)	intron (NM_153510, intron 3 of 6)	5894.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	5.67559325292392	5.45392355734074	5.55101236356675	5.85368025160371	5.37628693006142	5.32983482652812	5.19568091990456	5.49318800733378	-0.525047559085388	0.0649275726747527	0.271022736067102
Merged-chr17-81581396-3	chr17	81581271	81581471	+	725.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	L2|LINE|L2	157016.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	3.2629540606412	3.04601628994852	3.14759583532228	3.21497952849846	3.54073641663116	3.05988287055108	3.01130762639033	3.31570214838558	0.328901972666808	0.570361873624354	0.809979406302779
Merged-chr6-97511845-4	chr6	97511750	97511950	+	836.696411	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-24030.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.83711261434918	3.99915282141713	3.94323421634027	3.81640714724476	4.33791963405298	4.25671602768939	3.87576031656872	3.99061855417899	0.640247149305077	0.13687203525144	0.411427913943067
Merged-chr13-119342077-4	chr13	119341983	119342183	+	833.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308506, intron 14 of 16)	B3A|SINE|B2	66928.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	3.6003986952895	3.84643857002797	3.9693993684196	3.66301703643975	3.96786161416941	3.94560758075258	4.23388929760312	3.40410065251549	0.419102113854721	0.404270760916879	0.701398832235717
Merged-chr3-133582163-4	chr3	133582094	133582294	+	914.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37804.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	3.93816960582619	4.10149554324259	3.72319550847693	4.0130609579739	4.25297437200863	4.00801651834385	3.92261397935178	4.03276649325714	0.298055872920973	0.492797431933083	0.763768418925334
Merged-chr10-8934070-4	chr10	8933961	8934161	+	929.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47991.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.71482949153234	4.35990804978224	4.21865792685358	4.16396150489016	4.70541373669363	5.12474009280068	4.79989707779998	4.98191998680466	1.16240457250383	0.00178495212913598	0.0213998833754033
Merged-chr5-16309776-4	chr5	16309679	16309879	+	917.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110843, intron 12 of 38)	intron (NM_001110843, intron 12 of 38)	-243716.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	4.37389147296456	4.15556479614795	4.46414786228439	4.70312563055875	4.69430971863826	4.7592320498495	4.71316001279896	4.50384974677329	0.466897924356239	0.221662655272855	0.529761731915444
Merged-chr18-52750921-3	chr18	52750832	52751032	+	747.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16879.0	NM_026408	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	3.18366145687683	3.18215747038906	3.45648937288748	3.3699803406237	3.04037724279436	3.16614993575997	3.28725063419196	3.29830147470515	-0.408896640966097	0.45839808774755	0.741283112681362
Merged-chr1-45824625-4	chr1	45824544	45824744	+	840.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	29478.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	4.68938197134179	4.08052676970633	4.20571631655105	5.10363557171005	4.06148748640346	4.06105055786247	4.40960014446492	4.15331392680063	-0.992261443210019	0.0351017262159695	0.185610018804765
Merged-chr5-4876767-4	chr5	4876663	4876863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 14 of 14)	intron (NM_011074, intron 14 of 14)	-118547.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	6.11523904808246	5.64103332663312	6.05475569640334	6.6775450479166	5.52251272953337	5.89912821212403	5.95929335646016	6.36478550452011	-0.348480197197584	0.288711481986452	0.600707236957429
Merged-chr1-189657670-3	chr1	189657579	189657779	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081363, exon 12 of 18)	exon (NM_001081363, exon 12 of 18)	30407.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	3.17057026740201	2.95247390312246	3.47058871419672	3.6031776526286	2.91715593444742	2.80972934146883	2.84578481970562	2.85266908976287	-2.0422903108294	0.00249743658329893	0.0277281295527429
Merged-chr18-76944213-4	chr18	76944117	76944317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039201)	promoter-TSS (NM_001039201)	102.0	NM_001039202	76987.0	Mm.236127	NM_029826	ENSMUSG00000025421	Hdhd2	0610039H12Rik|3110052N05Rik	haloacid dehalogenase-like hydrolase domain containing 2	protein-coding	7.48931292519228	7.61205161090577	8.15817800887492	7.45537111169742	7.06222805270937	7.56044071261598	7.41552798317745	7.49476909333253	-0.417920244257639	0.0677375859020554	0.277812516507301
Merged-chr19-8534807-4	chr19	8534713	8534913	+	877.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56441.0	NM_001164634	19879.0	Mm.285294	NM_031194	ENSMUSG00000063796	Slc22a8	Oat3|Roct	solute carrier family 22 (organic anion transporter), member 8	protein-coding	4.14286916698892	3.88939371369043	3.77822601431632	3.88127518543495	4.40943706907951	4.35858192296691	4.29336626303974	3.99681992325302	0.909491036481958	0.0297827662098723	0.166423890410779
Merged-chr7-30973954-4	chr7	30973835	30974035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017405)	promoter-TSS (NM_017405)	131.0	NR_038860	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	6.4611028644647	6.47734869306666	6.6859056877475	6.37463459724448	6.64885683464217	6.68999926227521	6.76323862626284	6.60580379038478	0.265676362838701	0.20205549243572	0.504566133212499
Merged-chr5-92436232-4	chr5	92436150	92436350	+	968.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5A|LINE|L1	-1051.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	4.73935827244037	4.33388307018021	3.9818540447664	4.20598948834643	4.25530154168896	4.62730252321964	4.35468607719478	4.08915674085502	0.00927338132449076	0.982836399429797	0.993865312500427
Merged-chr8-35428300-4	chr8	35428206	35428406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52565.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	6.6311216193418	6.90548419428672	7.04394836333445	7.03028151525403	6.31203567968864	6.40804968794193	6.71775151069556	6.59573669870764	-0.582662677246656	0.00851342350012708	0.0701768351262936
Merged-chr1-52113810-4	chr1	52113634	52113834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5704.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	7.73974364645211	7.77430736562279	7.61777838017388	7.48895880366124	7.56747607649903	7.750997794057	7.63933106469433	7.55967197192132	-0.0317881697503353	0.855428654409222	0.945640332561297
Merged-chr1-107389939-4	chr1	107389831	107390031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	27617.0	NM_025867	66957.0	Mm.12638	NM_025867	ENSMUSG00000026327	Serpinb11	2310046M08Rik|AU015399	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 11	protein-coding	5.93250404430375	5.69487519728858	6.46707991672028	6.59456340068572	5.85158536710848	5.86009393247213	5.80863543514798	5.78389253800911	-0.645276700654201	0.0289051998863209	0.163353967662441
Merged-chr7-28709680-4	chr7	28709584	28709784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-7098.0	NM_001310687	50760.0	Mm.358659	NM_015796	ENSMUSG00000030598	Fbxo17	Fbg4|Fbx17|Fbxo26	F-box protein 17	protein-coding	5.9329638853589	5.63322116117946	5.53547607093709	6.01464103162041	5.75212793262107	5.55991436394221	5.88229200213292	5.90825614254854	-0.0419665569480654	0.87797856886268	0.954314763971155
Merged-chr4-133108062-4	chr4	133107969	133108169	+	929.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22564.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	5.88934992858204	5.09084595882775	5.65689706123906	6.0149918106426	4.81380065909167	5.10130205387297	5.15460002370029	4.95536242212752	-1.28214841481758	0.000174286408083268	0.00324497312083676
Merged-chr15-6402946-4	chr15	6402844	6403044	+	984.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	16196.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	5.03581821318768	5.12736895864107	5.00072691588989	5.32373253088568	5.37933207508614	5.24629076658366	4.94026411804851	5.34543419047855	0.184517202646577	0.555508499474247	0.801562892315961
Merged-chr16-55789113-4	chr16	55789016	55789216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33022.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	6.37395563083784	6.85735286031558	6.66778740726252	6.68123887176951	6.54988935857144	6.29038216399773	6.05773976634416	6.42425208594515	-0.451316019477999	0.0561285345669496	0.247975850835041
Merged-chr2-31172270-4	chr2	31172209	31172409	+	985.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178760, intron 5 of 17)	intron (NM_178760, intron 5 of 17)	19993.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	5.03121227788729	5.08284126429043	4.85085655325267	5.40931598932333	4.64830966517063	4.82118709421929	5.16482681811005	5.21644650025649	-0.288925466122748	0.413529048678669	0.708462289086549
Merged-chr10-122528416-3	chr10	122528307	122528507	+	639.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41484.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	2.51890959461547	2.57298574180261	2.71807491888456	2.71011753478853	2.49063605832028	2.82459228237507	2.70817737380346	2.71669062689269	0.242810137578384	0.714904644007242	0.886003030420421
Merged-chr19-9924763-4	chr19	9924651	9924851	+	789.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25218.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	4.1285859404209	4.04567306710722	4.21917741235336	4.30164349919716	4.0089930214478	3.99383733024554	4.11138100213002	4.34032118603185	-0.172569149117418	0.675779960991055	0.866929785285144
Merged-chr9-31030380-4	chr9	31030306	31030506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172765)	promoter-TSS (NM_172765)	-238.0	NM_001115130	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	7.70496088708206	7.96427113790953	8.33784614420255	7.93403114709052	7.68297466099522	7.9737784399631	7.98763821471859	7.89665703718305	-0.151250083398044	0.435321746583705	0.724523208691715
Merged-chr17-67353098-4	chr17	67352999	67353199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	1360.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	6.20776692135461	6.09214168103271	6.46294268011494	6.58249021873186	6.6265341524811	6.2815361204031	6.13648704926251	6.31956977263919	0.00226673821564292	0.992778365419786	0.997388444209103
Merged-chr6-139882237-3	chr6	139882131	139882331	+	615.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207683, intron 25 of 31)	intron (NM_207683, intron 25 of 31)	40786.0	NM_011084	18705.0	Mm.333471	NM_011084	ENSMUSG00000030228	Pik3c2g	C80387|PI3K-C2-gamma	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma	protein-coding	3.07146764979034	3.16189128865025	3.3865870233451	3.39914939942456	3.22267420794051	3.50169440193738	3.4793354299101	3.68250994611446	0.714838803490258	0.193517611389985	0.493723433138384
Merged-chr2-58159302-4	chr2	58159210	58159410	+	891.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139200, intron 1 of 7)	intron (NM_139200, intron 1 of 7)	812.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	4.00730576721292	3.8990636509327	4.10487176800187	4.22233596231652	3.9869715162383	4.13103541259911	4.25947318997541	4.23512088738008	0.198093694060959	0.635265533402213	0.845633612363053
Merged-chr17-50025322-4	chr17	50025258	50025458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 7 of 9)	intron (NM_181397, intron 7 of 9)	165139.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	6.96985571247531	6.8069638685943	6.25997249914148	6.90716022387752	6.75638068905714	6.61576313288723	6.72698519831576	6.83934619484214	-0.0490038900070256	0.832094861178328	0.935710699145492
Merged-chr19-4149536-4	chr19	4149437	4149637	+	911.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011778, exon 2 of 11)	exon (NM_011778, exon 2 of 11)	874.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	4.50658672624706	3.95119740985402	3.69328297451812	4.00780901222747	4.29412134489883	3.8756710440641	4.10118783225625	4.02277821411946	0.0490953058400871	0.916711106679234	0.969159176293629
Merged-chr19-37048094-4	chr19	37048046	37048246	+	951.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 9 of 10)	B3A|SINE|B2	122067.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	3.63403181658993	3.55787626720706	3.94281805755537	3.54025577618342	3.87265963514002	3.8657493558153	3.96957925390933	3.9403591560402	0.718949227935851	0.114006096679455	0.373450486813086
Merged-chr15-6435938-3	chr15	6435828	6436028	+	855.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 11 of 13)	intron (NM_001008702, intron 11 of 13)	-9405.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	3.33212853184541	3.16698476461476	3.64003570311975	3.43779208883416	3.38253247335187	3.44581493307165	3.20052419758285	3.33082543245278	-0.21609872675245	0.686785432705673	0.871908413750359
Merged-chr7-46607463-3	chr7	46607354	46607554	+	858.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013789, intron 8 of 10)	intron (NM_013789, intron 8 of 10)	32353.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	3.51384788048847	3.48246864156707	3.45764790666747	3.45174077957819	3.4376781458634	3.73833169392352	3.60568316673883	3.61862866094018	0.402479170349058	0.404793837121461	0.701861554430198
Merged-chr11-53444069-4	chr11	53443969	53444169	+	880.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	10783.0	NM_008110	14566.0	Mm.9714	NM_008110	ENSMUSG00000018238	Gdf9	Gdf-9	growth differentiation factor 9	protein-coding	4.39749681998437	5.04938135419	4.20098227225628	3.7194596850322	4.76662002899382	4.66310512753596	4.6979975629089	4.60625509495245	0.536682007524925	0.255786114233528	0.567388281053066
Merged-chr16-57550319-4	chr16	57550203	57550403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	1061.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	7.18893405091636	7.23239088070846	6.93192562934955	7.12604420716649	7.32919859925781	7.31013044272679	7.18693934629885	7.04419169299958	0.135178361346797	0.476610795494328	0.753093932967774
Merged-chr5-24451789-4	chr5	24451695	24451895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139153)	promoter-TSS (NM_139153)	-382.0	NM_001359881	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	8.1053486656164	8.3358793736905	8.36989507194314	8.07894524362247	8.30392315650763	8.41999485545089	8.33082219081586	8.37493478413036	0.168152619178324	0.293048191731852	0.60553679205796
Merged-chr4-95341080-4	chr4	95340970	95341170	+	950.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-216437.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	3.91999726277056	3.89869830147956	4.34349211843162	4.07820862728942	5.4117688920635	5.26411406347181	5.03285191499679	5.57445410064589	2.64617943616149	6.43794776610524e-12	6.02163842370046e-10
Merged-chr10-4388095-4	chr10	4388018	4388218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359811)	promoter-TSS (NM_001359811)	-10.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	5.76635398383409	5.76630262688319	5.99262373084536	5.86788752764977	5.78967712584085	5.866889518868	5.68819669569083	5.8116323146063	-0.100943967403684	0.683370425300399	0.870309436951249
Merged-chr11-70237867-4	chr11	70237781	70237981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177603)	promoter-TSS (NM_001177603)	33.0	NM_001177601	104457.0	Mm.30016	NM_026757	ENSMUSG00000020831	0610010K14Rik	1110020A23Rik|AL033328|AU045833|Bap18	RIKEN cDNA 0610010K14 gene	protein-coding	7.9669374139933	8.38882447254718	8.05768883746651	7.79631852695227	8.37254264558197	8.54549601782204	8.12705633777459	8.02548853276753	0.276977643479751	0.170798261806628	0.463994222074314
Merged-chr13-110395867-4	chr13	110395771	110395971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152804, intron 1 of 13)	intron (NM_152804, intron 1 of 13)	827.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	5.58405480455932	5.47308860198751	5.99041935063541	6.11831766847901	5.61242755693537	5.30175209118187	5.93922348064464	6.06502572697786	-0.112196528131436	0.722530887404075	0.889239126977372
Merged-chr3-122964525-4	chr3	122964436	122964636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133857, intron 2 of 15)	intron (NM_133857, intron 2 of 15)	19911.0	NM_133857	99526.0	Mm.491248	NM_133857	ENSMUSG00000039701	Usp53	AA939927|Phxr3|Sp6|mKIAA1350|mbo	ubiquitin specific peptidase 53	protein-coding	5.35210110678115	5.47686810943116	5.35301309955282	5.69671329911806	5.6890904092731	5.40073439006981	5.55046019150627	5.43857342998206	0.0628531177812457	0.824905612136166	0.932872953499947
Merged-chr15-102246290-6	chr15	102246185	102246385	+	984.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001042727, exon 1 of 8)	5' UTR (NM_001042727, exon 1 of 8)	215.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	4.09533258424332	4.17150905180343	4.39890571779037	3.9714558262617	4.16860232483521	4.36188922589255	3.81189169631595	4.35695699841334	0.082154077327537	0.849159880863564	0.943016077779251
Merged-chr1-87650715-4	chr1	87650661	87650861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	30449.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	6.84124078871042	6.58169273543158	6.67466768304543	6.78688435439614	6.52186466544019	6.51095560043551	6.54795009672606	6.69946686248405	-0.226052149546211	0.271943763436054	0.583524814229316
Merged-chr6-24965047-4	chr6	24964913	24965113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CTG)n|Simple_repeat|Simple_repeat	-8888.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	5.27292681268152	5.19452505379436	5.79979652420648	5.23710714650696	5.25015118602336	5.28524385922268	5.24775580809671	5.30089137989191	-0.213615567187432	0.488311318707969	0.76118893988362
Merged-chr2-167241152-4	chr2	167241048	167241248	+	858.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008968)	promoter-TSS (NM_008968)	-611.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	4.24875779314083	3.89410587667024	4.38704640020269	4.63343250428028	4.62540370339565	4.32758499081329	4.73767133435109	4.46838974398382	0.492171038938385	0.246711987655536	0.557995637343335
Merged-chr8-37037645-3	chr8	37037557	37037757	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13419.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	5.66457238577278	5.38117750116247	5.58227725562525	5.89220675476486	3.7655597877922	3.95981458944902	4.01937765881804	4.09954422017987	-4.12977663541796	3.28576917074576e-18	8.5984471986953e-16
Merged-chr13-70638167-4	chr13	70638090	70638290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144837)	promoter-TSS (NM_144837)	-556.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	7.80843817924342	7.57221763698147	7.80974588372649	7.90895441384759	7.7787685613003	7.68579097743906	8.01412081061273	8.053522976944	0.138261185847153	0.445209353083783	0.731298032078032
Merged-chr3-51327738-5	chr3	51327667	51327867	+	883.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	L1M4c|LINE|L1	12877.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	3.83413345810253	3.80846688682236	3.56249691914832	3.69281148538561	3.67572181323983	3.85216758979836	3.60800045490466	4.13579109924635	0.302011410569357	0.523675991000085	0.782605836011569
Merged-chr18-20743565-2	chr18	20743465	20743665	+	987.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	RSINE1|SINE|B4	2839.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	3.07721734672112	2.85982196244877	3.24542846765667	2.84095676786324	2.84254735019113	3.36048488854624	3.00553862467985	3.01497180863624	0.228094922790537	0.710803146788238	0.884205822880811
Merged-chr10-60333835-4	chr10	60333759	60333959	+	862.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 40 of 68)	intron (NM_001252635, intron 40 of 68)	-12992.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	4.38519143992642	5.0729547887758	4.29636964993014	3.81312841860627	4.23841342021991	4.51843228918346	4.6687806106723	3.72919124408768	-0.329789065876165	0.536451830985988	0.790413895500872
Merged-chr9-83555804-4	chr9	83555716	83555916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	7478.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	5.3776102892126	5.87824875934901	5.3785274526864	5.6408677857102	5.96795504789297	5.58674027429912	5.5273161394903	5.63114828927052	0.18005246285703	0.535224894360345	0.789648104016425
Merged-chr9-107633509-4	chr9	107633411	107633611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	1831.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	5.76349218255536	5.74924518958352	5.83796562932285	5.5452375627998	5.88533717862421	5.96541333433612	6.27600715578581	5.96892823943654	0.507075298183575	0.0466938906200098	0.222151761469776
Merged-chr3-61592527-4	chr3	61592427	61592627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	228020.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	6.84771921552636	6.94249398168633	7.12886117409198	7.46759903543083	7.14525045157957	7.23467221266515	6.77194229844782	7.02891648023105	-0.10720023636657	0.639917191327845	0.847811368292689
Merged-chr6-49258024-2	chr6	49257929	49258129	+	740.666626	f0_c57.idr|f1_c57bl6.idr	intron (NM_001362188, intron 1 of 8)	intron (NM_001362188, intron 1 of 8)	6023.0	NM_001347209	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	2.37446552900186	2.32436438760088	2.37465075479972	2.15248867067091	3.16490214682167	2.87118388964227	3.32268780842872	2.9979938369605	5.13123147781958	7.15300480486968e-09	3.92252487677826e-07
Merged-chr3-79181851-4	chr3	79181756	79181956	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31063.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	4.77228773166619	4.92825904356368	4.59431925114163	4.61512832715464	5.25695229717506	5.34060406489235	5.20116703607725	5.60103561282332	1.20371933739903	0.000145902050680025	0.00278946066756742
Merged-chr2-13558802-4	chr2	13558692	13558892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14128.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	8.37809471413461	8.28195651536594	8.19381104419325	8.51084311193243	8.58117337445621	8.55181678359712	8.67356757785013	8.68693509895275	0.340936255273791	0.0289029308692986	0.163353967662441
Merged-chr5-144013910-3	chr5	144013807	144014007	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177682, intron 1 of 14)	intron (NM_177682, intron 1 of 14)	946.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	3.39941640846112	3.74955221987978	3.26695608622829	3.63468536602686	3.76706742415743	3.90156457788634	3.71774485176594	3.57544567109856	0.642396248600424	0.205069159215318	0.508663844570223
Merged-chr6-29940629-4	chr6	29940509	29940709	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037740, intron 16 of 20)	intron (NM_001037740, intron 16 of 20)	23596.0	NM_001037740	320609.0	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	5.36911976754732	5.45064797425156	5.31059558199293	4.88499729995173	5.66891677638116	5.5440067799371	5.4267813420179	5.03730154232434	0.340895408951821	0.29494196838142	0.607051856907183
Merged-chr8-46876133-4	chr8	46876036	46876236	+	935.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110751.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	4.71200543855295	4.85413034624256	4.63692014598431	4.77346067803951	4.66620630248223	4.50770224022218	4.57608352716665	4.32681370568685	-0.47271124878122	0.182630520550911	0.479242684692839
Merged-chr12-110447014-4	chr12	110446939	110447139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135001)	promoter-TSS (NM_001135001)	-140.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	7.49980596771292	7.48314141912902	6.76761147925658	6.95058862894322	7.62402380725363	7.45329941941895	7.72123917815693	7.08641191974322	0.381362406178877	0.121081248469221	0.385352503305557
Merged-chr17-46298780-4	chr17	46298662	46298862	+	925.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286013, intron 2 of 5)	intron (NM_001286013, intron 2 of 5)	834.0	NM_001286013	106565.0	Mm.23633	NM_134120	ENSMUSG00000047428	Dlk2	AI413481|DLK-2|Egfl9	delta like non-canonical Notch ligand 2	protein-coding	4.59366779891625	4.71039044265088	4.17762167860347	4.06994456201258	4.71880274153445	4.68713353391008	4.72077586403162	4.77530997523949	0.713527563166239	0.0660329769223072	0.273631091829359
Merged-chr15-63625010-4	chr15	63624928	63625128	+	933.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-145420.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	4.89506026679332	4.64593334656748	4.89587956659837	5.02202202810684	4.59618540212487	4.68042724389801	4.83820968832028	4.58863085312339	-0.42799520910877	0.212223466184517	0.517093557647202
Merged-chr7-115019455-6	chr7	115019305	115019505	+	871.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a-int|LTR|ERVL-MaLR	68131.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	4.1059069775286	3.94274602687346	4.46991044783573	4.26508406816797	4.17953386321674	4.02649165916749	4.08873917662505	3.78833188159276	-0.454574913469899	0.299160393355262	0.611476325488255
Merged-chr6-121272087-4	chr6	121271910	121272110	+	898.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26104.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	3.3913806377869	3.43029884004697	3.50832137751901	3.25228268375313	3.77415075518266	3.68016406510687	3.69761387608675	3.50640621890023	0.934271085670739	0.0548251512685495	0.244572539617955
Merged-chr2-28547994-4	chr2	28547916	28548116	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 11 of 17)	intron (NM_001145836, intron 11 of 17)	14552.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	4.93993018487403	4.80919848549187	4.4014273938702	4.71177180847074	5.08455061719354	4.9335385343388	5.07438215406455	4.86780237088206	0.539615405514134	0.108394415107301	0.363371959124873
Merged-chr7-126701261-4	chr7	126701142	126701342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301374, intron 6 of 10)	intron (NM_001301374, intron 6 of 10)	2978.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	5.85383689722218	6.57293916587154	5.72516642231197	5.61495982237625	6.35827598174301	6.10371104172656	6.18527652983811	5.92258984866198	0.244815112560324	0.425700119152668	0.717130352428651
Merged-chr18-80311155-4	chr18	80311037	80311237	+	914.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190373, intron 3 of 3)	intron (NM_001190373, intron 3 of 3)	53117.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	4.62000559564187	4.69581001385457	5.1011091628785	5.17827877941882	4.68578073152872	4.52485023475092	4.51427182505659	4.65876515961103	-0.698216590771173	0.0565597186070248	0.24907902064774
Merged-chr4-86667796-3	chr4	86667679	86667879	+	686.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007408, intron 3 of 7)	intron (NM_007408, intron 3 of 7)	2280.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	3.05527825414971	3.38143448905089	3.41966878842681	2.7287595450259	2.96783035387757	3.04115527224387	2.70854894456118	2.7144697328927	-1.29285389099598	0.063555298245229	0.267656008864612
Merged-chr10-118768002-4	chr10	118767897	118768097	+	960.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100906.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	4.57310968820684	4.52371430777435	4.93485422494421	4.51097500736181	4.66343066804071	4.66345622829651	4.70836974202328	4.72768846103191	0.118214213752034	0.736725618249924	0.896047584392655
Merged-chr16-65562723-4	chr16	65562629	65562829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026879)	promoter-TSS (NM_026879)	-32.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	7.77045741578979	7.22260631348143	7.44760188985685	7.70137766013566	7.62640591882551	7.62492606442028	7.5995966664549	7.4028942381014	0.0136980496505532	0.944420053997352	0.980029938254562
Merged-chr4-137909641-4	chr4	137909528	137909728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 2 of 19)	intron (NM_199307, intron 2 of 19)	47391.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	6.01956569068748	5.77349973254909	5.63353761669872	5.82287017933468	5.97525944814357	5.57788738856937	5.68248940413116	5.45987749080201	-0.191321199742225	0.487785141282145	0.761057402147961
Merged-chr4-149120140-3	chr4	149120028	149120228	+	921.1333619999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104263, exon 4 of 4)	non-coding (NR_104263, exon 4 of 4)	6635.0	NM_007745	12854.0	Mm.6204	NM_007745	ENSMUSG00000028971	Cort	CST|PCST	cortistatin	protein-coding	3.47911218537758	3.63873727774147	3.78468402277316	3.23443100260753	4.47160158641184	4.11356402458057	3.92174306517901	4.15936133572823	1.88729238040701	8.59741337784781e-05	0.00178934294392348
Merged-chr9-45301315-2	chr9	45301215	45301415	+	969.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17785.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	2.74395668101068	2.94662536684951	2.67150779154573	2.88203384781794	3.2547196268243	3.04958573213872	2.93086308604296	2.99932565322902	1.04908913005021	0.0900555165663494	0.327685679456839
Merged-chr15-51692920-3	chr15	51692821	51693021	+	990.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	172540.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	5.20640969628493	4.72084079683509	5.58781174200836	5.42566795033509	4.24549112685618	4.60517776515155	4.72657036827111	5.44530678471151	-0.842865599718467	0.0537981324024192	0.242069490250446
Merged-chr4-117886947-4	chr4	117886850	117887050	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033617, intron 1 of 7)	CpG	379.0	NM_033617	114143.0	Mm.207052	NM_033617	ENSMUSG00000033379	Atp6v0b	2310024H13Rik|Atp6f|VMA16	ATPase, H+ transporting, lysosomal V0 subunit B	protein-coding	5.0004329794972	5.04368330248689	5.34703455741334	5.45722891079867	5.65816782299823	5.63667727803903	5.61444642242151	5.5651489827802	0.65122080220009	0.0266998096901732	0.155203409876426
Merged-chr7-24270409-4	chr7	24270294	24270494	+	929.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009567)	promoter-TSS (NM_009567)	-24.0	NM_009567	22755.0	Mm.383535	NM_009567	ENSMUSG00000055305	Zfp93	Znf235	zinc finger protein 93	protein-coding	4.83853811220618	4.21834940041315	5.05779630386129	4.883230695417	4.50059866628933	4.52638185610504	4.81576230595536	4.48513397367582	-0.422645529536656	0.283922828411335	0.595969718026818
Merged-chr1-180919889-3	chr1	180919799	180919999	+	823.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15123.0	NM_010094	13590.0	Mm.378911	NM_010094	ENSMUSG00000038793	Lefty1	AI450052|Ebaf|Leftb|Stra3|Tgfb4|lefty|lefty-1	left right determination factor 1	protein-coding	4.09995524522327	3.48944937129583	3.78200096222547	3.49115456004951	3.64216621051403	4.00442834769268	3.95556266290916	3.67226347225926	0.277859166358538	0.579186806111402	0.815251710931408
Merged-chr10-94190346-1	chr10	94190246	94190446	+	684.5	f0_balb.idr	intron (NM_011629, intron 11 of 13)	(TTTTTG)n|Simple_repeat|Simple_repeat	-8663.0	NM_025551	66414.0	Mm.27886	NM_025551	ENSMUSG00000020022	Ndufa12	2410011G03Rik|AW112974	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12	protein-coding	3.10760668706512	3.12203543233784	3.10805500931606	3.13109243462426	2.69346156542232	2.60914747487346	2.65796474580412	2.99431990395329	-1.76403549882015	0.00927488278402172	0.0747821569646445
Merged-chr13-101905889-4	chr13	101905785	101905985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137668.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	6.29459477925981	6.04746648834467	6.90988941924767	6.47078114358815	5.94610076707081	5.93259146159832	6.22610016675369	6.23462206821827	-0.569713655053535	0.0364254167648105	0.18981804963046
Merged-chr17-8901659-4	chr17	8901573	8901773	+	935.7374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 2 of 21)	MTC|LTR|ERVL-MaLR	51688.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	4.70991982611895	4.54763910604149	5.10127931731572	5.20055716226255	5.20902576879426	4.71401265043289	5.07601903411645	4.74844175395477	0.0644261743071389	0.862819215665944	0.948353262475307
Merged-chr1-156681973-2	chr1	156681862	156682062	+	635.0	f0_balb.idr|f1_balb.idr	intron (NM_145413, intron 7 of 7)	L1ME4c|LINE|L1	-7623.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	3.05829299685691	3.46681909839654	3.11825323745903	3.1546348875692	3.06172383705188	3.10514107466781	2.78238893630034	2.92942880416337	-0.952924951947238	0.121027236618282	0.385251002873428
Merged-chr1-184441397-4	chr1	184441304	184441504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116287.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	6.12319300189919	6.2458444553498	5.86294086833173	6.57372630356161	6.4373139410277	6.44264929905225	6.41220938706962	6.58213387559687	0.322975383538876	0.201677748243217	0.504156139969769
Merged-chr11-83544462-4	chr11	83544338	83544538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13920.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	6.42038887460062	6.71835642929462	6.53732050773506	6.32106247835232	6.44640807369414	6.47064942683212	6.48804524673598	5.91329450523976	-0.219181259347177	0.371514023184319	0.675565348938607
Merged-chr7-102210364-4	chr7	102210345	102210545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022979)	promoter-TSS (NM_022979)	110.0	NM_001291358	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	8.80503800941494	8.83492598347937	8.72474297320514	8.6793097550294	8.64168197627993	8.71621701437276	8.68512080719386	8.50823853899874	-0.150676799288418	0.301592915994712	0.613713432847926
Merged-chr12-52480747-4	chr12	52480667	52480867	+	953.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_136881)	promoter-TSS (NR_136881)	-158.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	5.02199782619077	4.94383755704027	5.15095399715253	5.4507955616585	4.90226144412822	4.76690783181556	4.89406438085076	4.95024563464132	-0.574093033739527	0.0833222171467365	0.313732125173908
Merged-chr11-94226206-4	chr11	94226118	94226318	+	988.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14764.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	5.77046033792942	6.28393331107926	5.53990515517288	5.90788549276608	5.42255387615423	5.56905151423342	5.48368277902254	5.2534480388256	-0.797116346615976	0.00666742138659606	0.058698872835686
Merged-chr3-90491508-3	chr3	90491418	90491618	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133854)	promoter-TSS (NM_133854)	-505.0	NM_133854	20615.0	Mm.331182	NM_133854	ENSMUSG00000001018	Snapin	25kDa|AA407989|AV026596|Bloc1s7|Snap25bp|Snapap	SNAP-associated protein	protein-coding	4.63915825008068	4.73608890721604	4.36592411150929	3.90329345517786	4.97641040186402	5.07316844735644	4.87618272193949	5.11299349141439	1.21644939538253	0.00197417031590747	0.0231803808835331
Merged-chr9-108561070-3	chr9	108560977	108561177	+	838.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001114119)	TTS (NM_001114119)	576.0	NM_011830	23918.0	Mm.6065	NM_011830	ENSMUSG00000062867	Impdh2	IMPD	inosine monophosphate dehydrogenase 2	protein-coding	3.59968170306871	3.88541303939186	3.92287056704189	3.34080912295547	4.11815289006705	3.89264826923245	3.85767777334562	4.012203182685	0.813092901164624	0.0921440199577201	0.331998961472196
Merged-chr17-3156354-4	chr17	3156257	3156457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134123, intron 3 of 19)	intron (NM_134123, intron 3 of 19)	41385.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	7.5959232429403	7.42119572160239	7.67187743261546	7.55711683480077	7.37682829885099	7.39873642595084	7.65819365445072	7.26136057698549	-0.174693899279783	0.339701723872357	0.648838861254508
Merged-chr5-102003560-4	chr5	102003373	102003573	+	980.107178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	66448.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.49131493470859	3.79476358646372	3.49176476823366	3.34921171368933	3.71590617004839	3.6075008284579	3.68883712033131	3.54643669378481	0.349093508854132	0.478915178837889	0.754764349988147
Merged-chr5-4962167-4	chr5	4962079	4962279	+	968.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 10 of 14)	intron (NM_011074, intron 10 of 14)	-203963.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	4.94511672630499	4.91442868681652	5.20942487770467	5.36306976165006	4.96247753020936	4.79646356294446	5.32287185953183	5.01371761946955	-0.187628395640561	0.575527136837951	0.813074135248517
Merged-chr11-20691202-3	chr11	20691082	20691282	+	906.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252503, intron 7 of 7)	intron (NM_001252503, intron 7 of 7)	50374.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	4.08456189455209	3.836591792117	3.89796700872523	4.14335310609836	3.8076847204586	3.96687378819362	3.97780332718929	3.79093394595368	-0.337031777603673	0.442923569703953	0.729629169998677
Merged-chr6-54917771-4	chr6	54917679	54917879	+	900.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	53882.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	4.31460249693417	4.28427568920842	4.2712863597903	4.63650243076398	4.32975774121824	3.97482836088501	4.25253765016114	4.3125773087013	-0.413986360087581	0.310266155239858	0.622452228532409
Merged-chr16-36477122-4	chr16	36477038	36477238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21746.0	NM_025288	20863.0	Mm.136573	NM_025288	ENSMUSG00000054905	Stfa3	Stf3	stefin A3	protein-coding	7.49138842680677	7.80179532229894	7.74958090514054	7.74823628111339	8.0021001895094	7.63060361111606	7.95096430858015	8.07930082653708	0.290844074166027	0.108728788928915	0.364041895257499
Merged-chr14-65336998-4	chr14	65336905	65337105	+	732.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21671.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	3.62318040109208	3.96392370816859	4.25963220075226	3.80261375558343	4.3225239498249	3.86429014799512	4.0326310545403	3.74195615833899	0.245146761076039	0.610664046149222	0.831846135932013
Merged-chr17-10318836-4	chr17	10318732	10318932	+	956.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159517, exon 1 of 8)	exon (NM_001159517, exon 1 of 8)	529.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	4.62404170609364	5.08329253989537	5.09155377911187	4.44278124999097	4.60292732222999	5.0699595331881	4.94088260679862	4.82170609387972	0.0679126432648932	0.857118223324476	0.94616653253742
Merged-chr12-73603697-4	chr12	73603559	73603759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	18863.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	6.46785070880798	6.27562929947703	6.54500732956662	6.48208349357245	5.95284001685378	5.98163385997113	5.84962505043475	5.82436594008694	-0.831961883930706	0.000317513106372972	0.00530896532734831
Merged-chr6-50261765-4	chr6	50261700	50261900	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018769)	promoter-TSS (NM_018769)	-31.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	5.88170531296156	5.32854245659319	5.81551503612303	6.12913577867568	5.3501887515809	5.68120599420454	5.9160197104926	5.52902068245116	-0.335295214090414	0.279000922216181	0.591200221560106
Merged-chr12-21286234-4	chr12	21286080	21286280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018813)	promoter-TSS (NM_018813)	104.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	7.80216275027842	8.04184415286112	7.81098771798293	7.79933964437619	7.56249908645944	7.58545155549358	7.51682393930694	7.54877042064624	-0.410891783275126	0.014418360715503	0.101985938325429
Merged-chr2-181536598-4	chr2	181536488	181536688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271584, intron 2 of 5)	MYSERV6-int|LTR|ERVK	16103.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	7.46901262768457	7.30369345303254	7.23602415749965	7.25290207484116	7.17208412467305	6.96778625812615	6.93913979020892	7.07094112715568	-0.364436150704128	0.0516096924946351	0.236134158252641
Merged-chr7-30205590-3	chr7	30205486	30205686	+	705.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ETnERV-int|LTR|ERVK	-10433.0	NM_009795	12336.0	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|Cdps|Css1|D7Ertd146e	calpain, small subunit 1	protein-coding	3.3947722785682	3.36736220907094	3.08166592489974	3.1744740637974	3.5499475784567	3.51006159155293	3.58504764639861	3.33642446804574	0.852277673595881	0.100804022570399	0.348510274069284
Merged-chr13-95494576-2	chr13	95494481	95494681	+	870.75	f0_c57.idr|f1_balb.idr	Intergenic	L1MC5|LINE|L1	-15926.0	NM_001081159	268686.0	Mm.291249	NM_001081159	ENSMUSG00000021679	S100z	Gm625	S100 calcium binding protein, zeta	protein-coding	2.46394719152608	2.32286183172254	2.3770940083638	2.02920892184212	3.3378561523886	3.58415884753326	2.8253683880026	2.7684951148831	6.46978550960627	2.03427483233622e-10	1.48815671419178e-08
Merged-chr8-25974445-3	chr8	25974340	25974540	+	737.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029884, intron 1 of 17)	(CA)n|Simple_repeat|Simple_repeat	2304.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	2.97836628726264	2.76206019189032	2.83155907537289	2.88161611700116	3.61521405019551	3.28929717643916	3.21982503968551	3.66756757271487	2.31751965406764	0.000121701523843794	0.00238902172247034
Merged-chr6-136946441-4	chr6	136946343	136946543	+	924.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4544.0	NM_001301309	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	5.021702529317	4.76660415945168	5.05578383930574	5.25516971972869	5.17165739291631	4.81202534224989	5.15492642234214	4.83876005602454	-0.0686757782893875	0.837719140753451	0.938459467190736
Merged-chr6-108571372-4	chr6	108571267	108571467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51800.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	6.98020904294529	7.27217769955025	7.2630594254257	7.34432226513852	6.74838548357019	6.67319589936202	6.71152897029845	6.81499689506322	-0.68287222511754	0.000514011428553532	0.00788679014292128
Merged-chr8-104129964-3	chr8	104129870	104130070	+	669.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 6 of 11)	MTE2a|LTR|ERVL-MaLR	-24097.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	3.56507865125411	3.18348512489546	3.51525388546503	3.78434090980843	3.01820919761478	3.27529538769009	3.44876502962301	3.3493142241101	-0.91625208598302	0.111769875915448	0.369481144240466
Merged-chr14-77511628-3	chr14	77511522	77511722	+	937.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253759, intron 7 of 19)	Lx5c|LINE|L1	-4754.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	2.9746331701902	2.96523660403505	2.97494376692796	2.37309785123805	4.20414037354321	4.00922137704206	4.508116391523	4.09175854484797	7.51007917192222	1.43487113680582e-16	2.95181192620524e-14
Merged-chr7-68823464-2	chr7	68823364	68823564	+	822.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74226.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	3.32836800029244	3.10963666467688	3.26958657781223	3.70390765223134	3.2567647210007	3.38183460013984	3.25806893953121	3.5874538921706	-0.0390866734249141	0.945551370930369	0.980570261396225
Merged-chr3-139042681-4	chr3	139042585	139042785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 2 of 13)	intron (NM_001356388, intron 2 of 13)	32516.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	7.02651492134734	7.51422710575318	7.13444873586382	6.86136267747534	7.38001433566498	6.97548323871706	7.05239369178189	6.4544709677555	-0.190027772742807	0.465083406990072	0.745723070156486
Merged-chr2-157129271-4	chr2	157129174	157129374	+	763.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139520, intron 2 of 16)	intron (NM_001139520, intron 2 of 16)	5948.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	4.12770482933505	4.29093299694371	4.12832248441149	4.01547848773777	4.0835684781243	4.10301404069756	4.36109126291215	4.02895814071538	0.029888161761794	0.941827633338686	0.97898049638905
Merged-chr3-123332538-1	chr3	123332438	123332638	+	716.5	f0_balb.idr	intron (NM_027135, intron 10 of 22)	intron (NM_027135, intron 10 of 22)	53452.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	3.27653028655732	3.36572533321618	3.73353847055007	3.41563960906639	3.16041095253353	3.26059482484716	3.43409276614831	3.33477324910345	-0.564627828124705	0.295763555639757	0.607667841934993
Merged-chr12-116282108-4	chr12	116282011	116282211	+	888.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028731, intron 1 of 21)	intron (NM_028731, intron 1 of 21)	889.0	NM_028731	52635.0	Mm.273755	NM_028731	ENSMUSG00000021171	Esyt2	2410017M09Rik|4921504I16Rik|CHR2SYT|D12Ertd551e|Fam62b	extended synaptotagmin-like protein 2	protein-coding	3.9389819144886	3.59625560747328	3.78333305581348	4.01233309447603	3.98029690196163	4.20355400522714	3.65450654047191	4.24067387101423	0.507062455612528	0.283262573859492	0.595360804251864
Merged-chr7-122405250-2	chr7	122405150	122405350	+	826.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	116125.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	3.40729263607263	3.33953928076292	3.34759307751998	3.32338980790208	3.45239817553814	3.33252448226622	3.5581574871316	4.0038790404896	0.849666504598923	0.104317439410354	0.355154303333315
Merged-chr9-116102068-4	chr9	116101971	116102171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	73292.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	7.94475073427406	7.77617570593192	7.90440937854689	8.12276744693707	7.56954118869631	7.36979415684026	7.94143095485711	7.725162254607	-0.364799218723017	0.0583710737833882	0.253945031527889
Merged-chr17-63492825-4	chr17	63492717	63492917	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 1 of 8)	intron (NM_015794, intron 1 of 8)	7763.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	5.44871143951789	5.31651451256766	5.36576551983428	5.74928123156672	5.15828505171433	5.28734121507003	5.15397557624932	5.14178421412387	-0.571114681113019	0.055745831059654	0.247146216692315
Merged-chr3-88144729-4	chr3	88144681	88144881	+	843.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	2409.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	3.49455654034643	4.029311109843	3.43514261978575	3.28460166934585	3.69666575199663	3.72582586376417	3.36094638597292	3.70822207800612	0.124858592851175	0.818206807120228	0.930242996594411
Merged-chr2-129592095-4	chr2	129591996	129592196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291020)	promoter-TSS (NM_001291020)	-743.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	7.40754252250111	7.53865123249935	7.18647442477034	7.13216809932623	7.43275791043494	7.39806398609714	7.20690311027927	7.60062538342475	0.130046773211344	0.510157348784934	0.774550785571494
Merged-chr11-4980384-3	chr11	4980316	4980516	+	998.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243043, intron 1 of 22)	MLT1E3|LTR|ERVL-MaLR	-6408.0	NM_001355659	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	4.41385135910065	4.52407852651966	4.0458365725476	4.13201452486317	3.79050445253815	3.78327445693301	3.58521378649873	3.83812330713837	-1.48855639787936	0.00138777791943215	0.0175454075536876
Merged-chr17-35667579-4	chr17	35667496	35667696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175137)	promoter-TSS (NM_175137)	-4.0	NM_175137	68915.0	Mm.32002	NM_175137	ENSMUSG00000038838	Vars2	1190004I24Rik|Vars2l|mKIAA1885	valyl-tRNA synthetase 2, mitochondrial	protein-coding	6.56350444962381	6.68199370185236	6.34102403515599	6.45246227618307	6.47855508019083	6.27121828515179	6.53113691380096	6.65107131140727	-0.0332473322606512	0.880006936258888	0.955065788432447
Merged-chr4-141954247-2	chr4	141954147	141954347	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 11 of 31)	intron (NM_177868, intron 11 of 31)	-28745.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	2.8525434570659	2.69692083134845	3.21540842949461	2.61767807761409	2.59419843255212	2.61947176798057	2.71790070636169	2.65847196588239	-1.03193056304118	0.136579177146894	0.411042630338623
Merged-chr18-69290131-3	chr18	69290034	69290234	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-54358.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	5.4072219611499	5.49290448040039	5.40821775787275	5.68619409834141	3.82743341876316	4.04243215090748	4.21264462187421	4.22843741299374	-3.32846167269355	1.10483038536763e-15	1.9709454135359e-13
Merged-chr11-58094537-3	chr11	58094466	58094666	+	722.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9404.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	3.5347358945338	3.54674766657462	3.53520591815077	3.81530359426542	3.51708103467494	3.33863759199677	3.46626199849777	3.78141199452192	-0.285339150126973	0.575713589692165	0.813185666420437
Merged-chr7-73572760-4	chr7	73572661	73572861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14366.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	5.80301703995614	5.6399742658288	5.82804006807934	5.83740508188828	5.86596848307756	5.79936979822635	5.72546098137811	6.29363328056849	0.254218179046149	0.336727775335801	0.646629460254283
Merged-chr12-102356972-2	chr12	102356868	102357068	+	949.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_177620, intron 4 of 9)	intron (NM_177620, intron 4 of 9)	73327.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	3.08835046391361	3.25684172746577	3.08868439371307	2.56559463515901	4.43136222307233	3.57335634367149	4.03226649224892	4.23808033479201	4.06660945022581	5.93616371841054e-10	3.97862709334033e-08
Merged-chr4-33031403-4	chr4	33031308	33031508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_036602)	promoter-TSS (NR_036602)	28.0	NM_001355494	56228.0	Mm.259095	NM_019586	ENSMUSG00000028277	Ube2j1	0710008M05Rik|1110030I22Rik|NCUBE-1|Ncube|Ncube1|Ubc6p	ubiquitin-conjugating enzyme E2J 1	protein-coding	8.25486645445638	8.35430886667941	8.29689885483022	8.43642126981445	8.55158875674383	8.52514665450337	8.86479618502421	8.19027235409983	0.271827062658932	0.13639817507559	0.41091739052877
Merged-chr11-69340561-7	chr11	69340473	69340673	+	999.8095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027827)	promoter-TSS (NR_027827)	-196.0	NR_027827	80515.0	Mm.5324	NM_020591	ENSMUSG00000043419	Chd3os	2310043C11Rik|A030009H04Rik|AA589459|AB041807|MNCb-2875|RNF21	chromodomain helicase DNA binding protein 3, opposite strand	ncRNA	4.64204958796095	4.64784387907997	4.81192833826809	4.33319325869429	4.49269637874908	4.53485261558433	4.04029799309638	4.05402680810156	-0.699520261101862	0.0936364028553979	0.334750249505744
Merged-chr7-19701206-4	chr7	19701105	19701305	+	885.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_016871)	TTS (NM_016871)	-2017.0	NM_009696	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	4.3753260656905	4.15257682065091	4.29473384292467	4.19452456167542	4.27261988693655	4.1375852595736	4.23301381558138	3.90320839643986	-0.252735463549961	0.534500756758199	0.789286995820758
Merged-chr18-24152118-3	chr18	24152017	24152217	+	939.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30298.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	3.53936653670147	3.71285334032941	3.48335383714117	4.10059940563804	3.39781609581772	3.19392554024268	3.68006382400349	3.48154361461253	-0.955430238347078	0.0857300004754324	0.31886793665887
Merged-chr6-71543896-4	chr6	71543775	71543975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025783)	promoter-TSS (NM_025783)	23.0	NM_025783	66700.0	Mm.181278	NM_025783	ENSMUSG00000053119	Chmp3	25.1|4921505F14Rik|9130011K15Rik|CGI-49|D6Ertd286e|NEDF|Vps24	charged multivesicular body protein 3	protein-coding	7.41032701821128	7.66106786611617	7.21060740890015	6.94175514938564	7.62310196691161	7.3996008752316	7.56424942265783	7.47303434593358	0.262416438976178	0.221355956512789	0.529463056908312
Merged-chr10-77545114-4	chr10	77544988	77545188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 3 of 15)	intron (NM_008404, intron 3 of 15)	14740.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	6.70984086008188	6.6934538720145	6.10401871253435	6.6716125619214	6.53396570673197	6.1648433504865	6.73195117366443	6.64830266981596	-0.0510964501122733	0.837488073510623	0.938339070778508
Merged-chr17-72934314-3	chr17	72934197	72934397	+	768.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029999, intron 2 of 2)	intron (NM_029999, intron 2 of 2)	15992.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	4.149181534609	3.77764657107207	3.93449656846242	4.17627028990753	3.97784817874102	3.73408523405004	3.54275581670611	3.48910469136926	-0.897570053025345	0.0708483301658952	0.285410226548093
Merged-chr15-84126627-4	chr15	84126545	84126745	+	917.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3470.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	4.77611138656803	4.69052855880758	4.88010992508388	4.75061383455913	4.36906204278205	4.71633213163997	4.68093795906332	4.58070080555569	-0.410548912635268	0.239646529638455	0.550138318609215
Merged-chr11-59662452-4	chr11	59662370	59662570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012027)	promoter-TSS (NM_012027)	-25.0	NM_201245	26936.0	Mm.2402	NM_012027	ENSMUSG00000005417	Mprip	9530046C02|AA536749|AI647711|C76423|Gm34094|RIP3|Rhoip3|mKIAA0864|p116Rip	myosin phosphatase Rho interacting protein	protein-coding	6.66272361602714	6.30561278801614	6.25094593460855	6.49521051488753	6.75104536404348	6.44888287205416	6.90388891780784	6.34428644739606	0.286254411471428	0.229788199972284	0.538856256177995
Merged-chr11-32552833-3	chr11	32552699	32552899	+	804.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	19533.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	3.62007218246927	3.55498197677455	3.35916565368818	3.6129319101746	3.14553039274699	3.47294714367933	3.28816368834427	3.17117908870165	-0.988288746269406	0.0656981362976645	0.272885103708415
Merged-chr17-43580741-4	chr17	43580639	43580839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	10770.0	NR_045445	73504.0	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	6.44129824048301	6.28084880907169	6.40991245778728	5.96352711798046	6.04227099936745	6.26905116401626	6.14331283481684	5.95442239092989	-0.254994501211371	0.306204701260184	0.618676216497733
Merged-chr2-79636192-4	chr2	79636097	79636297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080558, intron 2 of 17)	CpG-8223	772.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	6.77348697428606	6.71955026350711	7.06188404502204	7.16470402208223	7.38715521903649	7.16368191019798	7.57046371923074	7.17352803589785	0.521922645729722	0.0146927156613242	0.103300356386546
Merged-chr1-80757031-4	chr1	80756944	80757144	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	1509.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	5.63001275029477	5.77066121503064	5.3289323187642	5.70397411072853	5.41292106956582	5.40948655851393	4.99095980058377	5.29389339740396	-0.586187824329977	0.0471706849798678	0.22359897350706
Merged-chr13-113611397-4	chr13	113611304	113611504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	7160.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	5.31722288945425	5.70420380726014	5.46360511224052	4.53127463208682	5.90283730898824	5.76777086569912	5.35107170973729	4.79198874268094	0.350120118560417	0.399042991521154	0.697130193277262
Merged-chr7-126898277-4	chr7	126898198	126898398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028389)	promoter-TSS (NM_028389)	-20.0	NM_028389	68742.0	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	6.68970943754448	7.10980754087709	6.39218048540123	6.57014328857923	7.19127785683327	7.1718124680208	7.14195013696645	6.90138426928508	0.544453025060161	0.017490601457609	0.116862642871557
Merged-chr4-109546715-3	chr4	109546613	109546813	+	920.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15416.0	NM_026291	67646.0	Mm.45820	NM_026291	ENSMUSG00000060491	4930522H14Rik	1700007J23Rik	RIKEN cDNA 4930522H14 gene	protein-coding	4.22942055848503	4.52660607736713	4.27765842522574	4.85176626722769	4.05669301541509	4.25602655017714	4.16305906347787	4.70655844217688	-0.454540505123203	0.300035950361305	0.612242959427995
Merged-chr4-148082491-3	chr4	148082342	148082542	+	891.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009642, intron 2 of 4)	intron (NM_009642, intron 2 of 4)	5622.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	3.91624663550276	3.36212322383698	3.42217881874449	3.81169592076123	3.51913702994313	3.47418365373201	3.52398299163747	3.53576438095095	-0.456685238655196	0.378584395598862	0.681182628403749
Merged-chr13-104110195-4	chr13	104110115	104110315	+	857.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029447)	promoter-TSS (NM_029447)	474.0	NM_144838	218544.0	Mm.44416	NM_144838	ENSMUSG00000042743	Sgtb	C630001O05Rik	small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta	protein-coding	4.80902690049026	4.52915521994184	4.65302601304219	4.75778288141397	5.0185390040738	5.05326568477998	4.58973988177516	5.0413171014765	0.50248028337343	0.141697116531025	0.418839287836592
Merged-chr1-191184736-7	chr1	191184616	191184816	+	899.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1383.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	3.5608614083706	3.61485386965357	3.71824592097304	3.34464502097594	3.93025268386892	3.73368326654745	3.37152873252448	3.55939982927896	0.365355810859068	0.474657072853558	0.751855589262771
Merged-chr2-90589573-4	chr2	90589456	90589656	+	975.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8909.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.71759335670862	4.80807486710661	5.00462092624694	4.95660481533825	4.91386985060977	4.58411794804057	4.91502088694852	4.9014056793945	-0.0819887106018747	0.805424806315796	0.925178766347246
Merged-chr8-70792498-4	chr8	70792394	70792594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199308)	promoter-TSS (NM_199308)	-61.0	NM_199308	546071.0	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding	8.07570825353173	8.04872300801681	7.5680879794293	7.97208016344014	7.92323825569304	8.08075705309987	7.81408328897229	7.55349312594298	-0.0995027939989477	0.614825712172346	0.834117577275116
Merged-chr19-44930987-4	chr19	44930898	44931098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081225)	promoter-TSS (NM_001081225)	-121.0	NM_172638	226151.0	Mm.212609	NM_172638	ENSMUSG00000036097	Slf2	3632432H19|Fam178a	SMC5-SMC6 complex localization factor 2	protein-coding	8.33577812548785	8.4590202332677	8.12996258169307	8.11464835199329	8.33735483800035	8.57874263466712	8.34617586020442	8.39025327999419	0.189984200009697	0.255066237426534	0.566611313706487
Merged-chr9-104337766-2	chr9	104337660	104337860	+	832.0	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019807)	promoter-TSS (NM_019807)	-38.0	NM_207668	56318.0	Mm.19941	NM_019807	ENSMUSG00000032561	Acpp	5'-NT|A030005E02Rik|FRAP|Lap|PAP|Ppal	acid phosphatase, prostate	protein-coding	4.50883864010766	4.24047303991694	3.84693432337032	4.60185956982721	3.71925292722107	4.02688501950696	3.83210631558365	4.10516922345045	-1.09159730617584	0.0194295126239641	0.125485280742323
Merged-chr10-120163703-4	chr10	120163624	120163824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 8 of 11)	intron (NM_001359184, intron 8 of 11)	37873.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	7.17799100052466	7.64942834647136	7.5162580658335	7.79720173922539	7.59087838340156	7.49407751078822	7.75845619617797	7.48307549448814	0.02632436012874	0.895913328319763	0.960979922829742
Merged-chr5-103817963-4	chr5	103817853	103818053	+	873.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133919, intron 6 of 19)	intron (NM_133919, intron 6 of 19)	63380.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	4.50046836679329	4.6876567557117	4.12294735995668	3.97635231671674	4.67138440645502	4.789657674428	4.396283414599	4.57771650661849	0.618631433896414	0.13348284265588	0.406812753145011
Merged-chr4-136355162-4	chr4	136355073	136355273	+	930.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43575.0	NM_001355182	74326.0	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	4.27655389774271	4.54031410761913	3.97312023441991	4.18525801965192	4.3569262217008	4.69157974786666	4.30218779232623	4.13145458916808	0.296389378580316	0.476159679558337	0.752752032426828
Merged-chr14-70160252-3	chr14	70160150	70160350	+	840.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004155)	promoter-TSS (NM_001004155)	-748.0	NM_001004155	268759.0	Mm.12148	NM_001004155	ENSMUSG00000044551	9930012K11Rik	-	RIKEN cDNA 9930012K11 gene	protein-coding	3.7359995391503	3.73099578713138	4.10275371158299	3.63598183802589	3.70782707448117	3.74395529052515	3.72146599691054	3.83620471533937	-0.151569179419688	0.745790885330654	0.89972457122677
Merged-chr17-64945841-4	chr17	64945726	64945926	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109755.0	NM_030031	78057.0	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	4.72238374679095	4.54160319675111	5.03638004362721	5.21759832511738	4.08866284360921	4.10343126382348	4.33520374486567	4.09214097710547	-1.76139260833056	1.86153020509467e-05	0.000477484174661021
Merged-chr7-49253190-4	chr7	49253124	49253324	+	998.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	7035.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	6.10825646531536	5.834466411748	5.92599472683031	6.35794670578897	5.36761381038091	6.30181867806099	5.14700956506524	5.41762709931275	-0.716207715584415	0.0380958133118602	0.19547447345191
Merged-chr16-44063330-4	chr16	44063197	44063397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-21289.0	NM_001359085	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	5.55609530402778	5.29844017093239	5.73293528095967	5.68073619639703	5.28386595811506	5.56064070488225	5.70374726743724	5.70521201362545	-0.0282021927972329	0.921756531882767	0.970945617079062
Merged-chr2-148579197-2	chr2	148579110	148579310	+	640.333374	f0_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-93405.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	3.50748356185551	3.41801520656486	3.40188048797785	3.72176167978737	3.09655708129618	3.20110372530421	3.44213483461171	3.28459223773359	-0.976948563818743	0.0740092968487598	0.293133812275214
Merged-chr8-3676985-2	chr8	3676885	3677085	+	968.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025701, intron 1 of 1)	intron (NM_025701, intron 1 of 1)	508.0	NM_025701	66682.0	Mm.29090	NM_025701	ENSMUSG00000040236	Trappc5	4021401A16Rik|TRS31	trafficking protein particle complex 5	protein-coding	3.48449577781825	3.35322004139608	3.1814077034875	3.12292353876615	3.63436207580411	3.36256301863752	3.29923131059531	3.93366202401362	1.00332689885121	0.0656421069813644	0.272782648208898
Merged-chr13-98874399-4	chr13	98874297	98874497	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 6 of 23)	intron (NM_178716, intron 6 of 23)	16645.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	6.29714560845995	5.98262421693257	5.94802973494626	6.16933076321765	5.88903326823834	6.00702997981892	6.00388892498069	5.5224433610003	-0.378690921009295	0.141660259439893	0.418816599528155
Merged-chr4-101155254-4	chr4	101155156	101155356	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 22 of 24)	intron (NM_146145, intron 22 of 24)	86218.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	4.71469791736227	4.47566335640836	4.78444555091056	4.52067569533107	4.72478424811157	4.52081725949816	4.50232265638399	4.34304586070451	-0.179634265812045	0.624900507129178	0.839659374707287
Merged-chr9-44640346-2	chr9	44640246	44640446	+	674.166687	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_181324, exon 14 of 14)	3' UTR (NM_181324, exon 14 of 14)	-32887.0	NM_001277851	58866.0	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	2.9319043463686	2.92720004170139	2.98889859127942	2.98823326308883	2.71636480769766	2.63049374053892	2.80165141752541	2.80960669694311	-1.04115699511849	0.100203133874622	0.347411537557806
Merged-chr6-8508530-4	chr6	8508412	8508612	+	893.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040452, exon 2 of 2)	non-coding (NR_040452, exon 2 of 2)	649.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	3.97093419938289	4.11215670591181	4.07221454470073	4.19603111256606	4.33489928476662	3.79982844381083	4.10197687303462	4.44400238210126	0.259308147308474	0.549196628155973	0.797894940001919
Merged-chr16-17232966-1	chr16	17232866	17233066	+	586.0	f0_balb.idr	promoter-TSS (NM_178922)	promoter-TSS (NM_178922)	-621.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	3.3163607913017	3.09558345235088	3.47416764055766	3.3115847483785	3.0901142691478	3.03925042699957	3.40943274642053	3.42184130213656	-0.201230284975634	0.721385272166642	0.888753092785481
Merged-chr9-65346113-4	chr9	65346005	65346205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016688)	promoter-TSS (NM_016688)	37.0	NM_016688	50996.0	Mm.29193	NM_016688	ENSMUSG00000041837	Pdcd7	C80112|ES18	programmed cell death 7	protein-coding	5.81289376869634	6.4029952847146	6.09816989870799	6.16543595649317	6.24283012333479	6.60625196484966	5.88572956748866	6.41099394443511	0.252790767430644	0.34508688539361	0.653391307302737
Merged-chr1-78607967-4	chr1	78607882	78608082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-49843.0	NM_001136222	74205.0	Mm.276016	NM_028817	ENSMUSG00000032883	Acsl3	2610510B12Rik|Acs3|C85929|Facl3|Pro2194	acyl-CoA synthetase long-chain family member 3	protein-coding	6.26138704700576	5.76470236819946	6.28004535161704	6.16958704254295	5.91433230585883	5.92278975083403	5.88877609085612	5.96030139849731	-0.332100422397298	0.184837162775638	0.482542916972652
Merged-chr17-27588624-1	chr17	27588524	27588724	+	599.5	f1_c57bl6.idr	intron (NM_001291046, intron 2 of 4)	intron (NM_001291046, intron 2 of 4)	-22897.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	2.38188921625255	2.38217504770539	2.22758929581189	2.28710429999179	2.64883333727154	2.69240942633928	2.69357580478973	2.64510076915923	1.94520092765229	0.00540013812513791	0.0502715709664126
Merged-chr16-84835373-4	chr16	84835282	84835482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302216)	promoter-TSS (NM_001302216)	243.0	NM_016755	11957.0	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	6.51198115175856	6.60434545671888	6.94301242745852	6.39819555398422	6.86189458796729	6.91584840075574	7.08249946519549	7.11335396416737	0.533697466016572	0.0146376614133274	0.102994671978967
Merged-chr19-42564151-4	chr19	42564036	42564236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177464, exon 2 of 7)	exon (NM_177464, exon 2 of 7)	45331.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	5.54411983282226	5.20985041702265	5.73774259704556	5.99894745169092	5.05410871182167	5.29505060443656	5.29112987230841	5.21694725161795	-0.809755714417706	0.0108575586961577	0.0837493524918862
Merged-chr6-72153607-4	chr6	72153514	72153714	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011375, exon 7 of 7)	exon (NM_011375, exon 7 of 7)	-30417.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	5.58070584447968	5.06836807094489	5.31400015200299	5.95209876289543	5.06974831232459	5.2983099032984	5.06137023159069	4.89138578560792	-0.822041085978163	0.0173053732680591	0.11604160161844
Merged-chr16-91406972-4	chr16	91406877	91407077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 1 of 6)	intron (NM_008349, intron 1 of 6)	742.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	7.10373336561771	7.59229313266399	6.82247280776697	6.46961594813754	7.20610613055158	7.24681271411299	6.88427364464362	6.56355877228431	-0.0760137855091696	0.792536403635567	0.919627897475503
Merged-chr5-146845087-4	chr5	146844988	146845188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026864)	promoter-TSS (NM_026864)	17.0	NM_026864	68895.0	Mm.266978	NM_026864	ENSMUSG00000029641	Rasl11a	1110065D03Rik|AI852031	RAS-like, family 11, member A	protein-coding	6.60723894112057	6.50556635892215	6.97624075808317	7.17973269689241	7.07643786455439	7.30842267137517	7.2341297890835	7.12700537232303	0.446917059725865	0.0523691582947569	0.238376362497258
Merged-chr10-80323041-4	chr10	80322936	80323136	+	949.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008793, exon 12 of 15)	exon (NM_008793, exon 12 of 15)	-2488.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	4.77185031899173	4.46306256215316	4.46732113043732	4.54654929847337	4.69640679033039	4.30608325872296	4.52990584715269	4.62615823114286	-0.0184691434092359	0.959766153069238	0.985625544893058
Merged-chr1-193191956-3	chr1	193191852	193192052	+	857.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153137, intron 8 of 15)	intron (NM_153137, intron 8 of 15)	9594.0	NM_153137	215243.0	Mm.261259	NM_153137	ENSMUSG00000037318	Traf3ip3	6030423D04Rik|AI115021|T3jam	TRAF3 interacting protein 3	protein-coding	3.14436935551251	2.97240015513632	3.14472767348813	2.55965717868327	4.23247163623725	4.45424651965473	4.42680844913889	4.08076159722765	5.56706918708257	2.99338736926177e-16	5.9515731719744e-14
Merged-chr8-3461136-3	chr8	3461027	3461227	+	840.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026951, intron 3 of 4)	B1_Mur1|SINE|Alu	6521.0	NM_026951	69129.0	Mm.45279	NM_026951	ENSMUSG00000069633	Pex11g	1810022F11Rik|1810049N02Rik|Pex11c|Pex11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding	3.2837321723321	3.06505802719633	3.3907807906675	3.53777066247307	2.94886832041158	3.14967680649133	3.15669058112127	3.28238263088455	-0.780318306096807	0.179523775471547	0.475749514329241
Merged-chr2-165487027-4	chr2	165486928	165487128	+	913.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6286.0	NM_001007581	381406.0	Mm.330785	NM_001007581	ENSMUSG00000039725	Trp53rka	2810408M09Rik	transformation related protein 53 regulating kinase A	protein-coding	4.88747855427839	4.87562179109159	4.47811375803344	4.32712379975768	5.35979511360198	5.06149792851942	4.89887263280141	4.65486228068178	0.760927128672131	0.0450870569780816	0.21713766527011
Merged-chr6-88008865-3	chr6	88008745	88008945	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009005, intron 3 of 5)	intron (NM_009005, intron 3 of 5)	10950.0	NM_001293655	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	3.88916406854178	3.29089722781947	3.67205990372314	3.74394445985084	3.29520539529594	3.26435961603742	3.395924061984	3.219417451479	-1.28787196441888	0.0190019721238401	0.123631160826676
Merged-chr1-171619874-4	chr1	171619777	171619977	+	838.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12467.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	3.80497343070781	3.81509887617296	3.62149564963407	4.28092653590858	4.26704813894539	4.40846232657533	4.0931831435471	4.06269024406959	0.740264924919558	0.124041848024645	0.390844386921036
Merged-chr16-91694899-4	chr16	91694792	91694992	+	903.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026994, intron 8 of 11)	intron (NM_026994, intron 8 of 11)	5994.0	NR_040389	100038392.0	Mm.440384	NR_040389	ENSMUSG00000085169	Gm10785	-	predicted gene 10785	ncRNA	3.99279585769027	4.05905405977569	4.0465722941965	3.39410879848116	4.53525272784998	4.72741043886666	4.53516922361235	4.09521976721613	1.51814484902247	0.00104630106316794	0.0139465130943848
Merged-chr10-8926367-6	chr10	8926233	8926433	+	898.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-40263.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.49843836431593	3.37447458783497	3.43805258322764	3.10596883359733	3.89355744753292	3.73343640649566	3.65079861210114	4.1026326338483	1.64242767842175	0.00102142720542123	0.013673907664976
Merged-chr9-106353979-4	chr9	106353882	106354082	+	958.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14650.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	4.98212112553462	5.21943984106988	4.76156171170859	4.76921368365584	4.95305941714235	5.22048064219904	4.92469953246465	4.63192532242325	0.0118629181537317	0.972732893728085	0.990177399251646
Merged-chr2-33371009-3	chr2	33370905	33371105	+	978.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 1 of 16)	(CCA)n|Simple_repeat|Simple_repeat	489.0	NM_001290570	241308.0	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	4.08561317474325	4.25879504090297	4.3692807638538	4.01519504309418	4.65509719906227	4.3634470582038	4.06936412423822	4.69916675922871	0.706616745833376	0.0860078060796902	0.319583922997822
Merged-chr17-87387237-4	chr17	87387131	87387331	+	943.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40510.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	4.61006295793518	4.45071954906584	4.52732981581545	4.72657593940973	4.64061939241744	4.74359682845241	4.58953335176724	4.95795244318539	0.305377140819105	0.387884489850343	0.688726934413767
Merged-chr13-38037956-4	chr13	38037832	38038032	+	860.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027724)	promoter-TSS (NM_027724)	943.0	NM_024242	71340.0	Mm.297130	NM_024242	ENSMUSG00000021428	Riok1	3110046C13Rik|5430416A05Rik|Ad034	RIO kinase 1	protein-coding	3.78830866784361	3.86212929630795	3.78883501419864	3.75530867389201	4.14875565482504	3.6108735599657	3.72039681842225	4.15088624952012	0.40289041537794	0.387279638211789	0.688139428549813
Merged-chr18-65679470-4	chr18	65679281	65679481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 6 of 8)	Tigger7|DNA|TcMar-Tigger	-18887.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	5.38591428429436	5.53454414245644	5.76738138426056	5.47407353759764	5.38295559358034	4.9835239624394	5.20386626920529	5.7632489063208	-0.305834660558855	0.329087481296248	0.640336735854547
Merged-chr11-103953980-4	chr11	103953873	103954073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008740)	promoter-TSS (NM_008740)	83.0	NM_008740	18195.0	Mm.260117	NM_008740	ENSMUSG00000034187	Nsf	AI316878|AU020090|AU067812|SKD2	N-ethylmaleimide sensitive fusion protein	protein-coding	5.27290610227217	5.23397462329999	5.38738393482976	4.91584392213728	5.01865649022481	5.22261380868722	5.27672507589598	5.24010874786358	-0.0158331089168707	0.959589122549979	0.985551429297447
Merged-chr17-74432770-4	chr17	74432654	74432854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 8 of 8)	MLT1A0|LTR|ERVL-MaLR	26354.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	6.54768471052773	6.22247596728445	6.85907887922522	7.05066825549347	6.38304812200598	6.10073897689889	6.44990056191727	6.35462160188711	-0.566610748380605	0.0302281064972661	0.168107382793102
Merged-chr19-55643620-4	chr19	55643500	55643700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045318, exon 3 of 4)	non-coding (NR_045318, exon 3 of 4)	58604.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	8.54863723168625	8.41469853584439	8.50698516154874	8.31713816426881	8.50918089585616	8.64505652666362	8.44319909458064	8.45694782145282	0.0896630137094262	0.557658724593773	0.802816324871987
Merged-chr2-167953147-4	chr2	167953032	167953232	+	846.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	20805.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	3.46514833099926	3.62094975884	3.90865998483273	4.25478697046091	3.80929095791078	3.76737984151627	3.79549266867177	3.85858051602019	-0.168021799311541	0.743357586486552	0.89894073126818
Merged-chr1-134083807-4	chr1	134083699	134083899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4644.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	6.6971891392983	6.80271440332314	6.78512009225681	7.09780516701424	6.6520450393861	6.07279120319509	6.97874576193598	6.67854367378429	-0.320062924137518	0.203403335958876	0.506172291375618
Merged-chr2-163919114-4	chr2	163919063	163919263	+	908.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183023)	promoter-TSS (NM_183023)	-480.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	3.2166016820427	3.32150035127713	3.55126736233265	3.87195551290703	3.16330439997406	3.32865227415261	3.26745535985697	3.2774039886245	-0.969240411957584	0.0897617693889505	0.327189946514957
Merged-chr10-123063068-4	chr10	123062953	123063153	+	909.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163024, intron 1 of 34)	intron (NM_001163024, intron 1 of 34)	13452.0	NM_001163024	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	4.93909324588834	4.29285159753275	4.90714292954451	5.35819002076713	4.61559309461026	4.51206723039192	4.54541900153022	4.64715514433693	-0.755849699201658	0.0630155487797588	0.266242283290464
Merged-chr7-48938413-3	chr7	48938313	48938513	+	758.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-20660.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	4.05663583331123	3.91059968434123	3.34743301781692	3.69848793603079	3.26172396711185	3.59280284561069	3.73462522337383	3.59069827589139	-0.702031896099725	0.191438146930948	0.490854206495116
Merged-chr9-70012603-4	chr9	70012501	70012701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039519)	promoter-TSS (NM_001039519)	53.0	NR_104093	235459.0	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	6.12951712541565	6.23550466705037	6.26655564223468	5.87776714325011	6.21707850074866	6.32644575417818	6.15899818771867	6.20563789830678	0.165058636121482	0.486309017905782	0.760084090940376
Merged-chr4-142098006-4	chr4	142097898	142098098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13694.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	6.496596626442	6.64797453356785	6.95289481228576	6.40879714127852	6.4377161040488	6.70656527800502	6.22839212912444	6.03779997025272	-0.378877519550315	0.136973544778357	0.411568236049586
Merged-chr9-22054504-4	chr9	22054401	22054601	+	941.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310759)	TTS (NM_001310759)	-2478.0	NM_010487	15571.0	Mm.390167	NM_010487	ENSMUSG00000003410	Elavl3	2600009P04Rik|Huc|PLE21|mHuC	ELAV like RNA binding protein 3	protein-coding	5.08361547397031	5.64868969306533	4.77264703883343	5.54807421276599	5.43023421894502	4.86603683992099	5.4168703302246	4.85460491648253	-0.256254256397751	0.49802230401561	0.767428122781451
Merged-chr17-10702984-4	chr17	10702888	10703088	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	137203.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	6.71125161147418	6.15997427908813	6.8468461892821	6.81858370351958	5.70414660055068	5.69719474716924	5.54794330681916	5.50789257680841	-1.61945782618877	1.82770996612701e-09	1.11573385659481e-07
Merged-chr3-98031386-4	chr3	98031329	98031529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	17891.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	6.10346968396841	5.66557151000729	6.17571907056361	5.93972203307048	5.39736651565233	5.49558515693534	5.35476196274793	5.53031414946893	-0.894884881056973	0.00106260074826067	0.0141320737407411
Merged-chr17-45599614-4	chr17	45599544	45599744	+	968.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199115)	promoter-TSS (NM_001199115)	-41.0	NM_001199115	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	5.07722987457858	4.95708544376877	4.79837920965184	4.79812392020519	4.66862272653559	4.76695187907637	5.27981021865836	5.07459009341393	0.115801427737733	0.737486864126729	0.896392006995728
Merged-chr6-116674410-1	chr6	116674310	116674510	+	1000.0	f0_c57.idr	promoter-TSS (NM_178045)	promoter-TSS (NM_178045)	-574.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	4.75486390658318	4.93868114186347	5.11559316832459	4.77062199353956	4.86058564870264	5.0503744188805	5.36786514841447	5.14299859434353	0.424107836701574	0.197814481715673	0.499140586391181
Merged-chr6-101555875-4	chr6	101555781	101555981	+	742.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177984.0	NM_018884	55983.0	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	3.88754792634285	3.88975764923408	3.56509022097893	3.45054336525403	4.10575286114769	4.05821229774449	3.42610183768577	3.83724896298272	0.521546035363132	0.307409547521063	0.619668210557665
Merged-chr13-41268017-4	chr13	41267913	41268113	+	995.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135577, intron 1 of 1)	intron (NM_001135577, intron 1 of 1)	18169.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	5.58349135870754	5.46605422332755	5.87358659875949	6.22088909094908	5.28964753309877	5.24154873308123	5.38379269384134	5.97248819027253	-0.549515760938097	0.100736710977305	0.348426611288108
Merged-chr10-41576049-4	chr10	41575943	41576143	+	846.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045341, exon 3 of 4)	non-coding (NR_045341, exon 3 of 4)	8027.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	4.22148271496819	3.78352255520399	4.30704439554653	3.91893407257811	4.38572898994609	3.93522746028457	4.20307734714757	4.42156076048955	0.48516339238269	0.266783926089169	0.57842963999018
Merged-chr6-34874642-4	chr6	34874516	34874716	+	995.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347101, exon 4 of 4)	exon (NM_001347101, exon 4 of 4)	3449.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	4.85352619331717	4.91319399282244	4.59216350939003	4.73165783341613	4.80453751790366	4.5920082388311	4.57125266211477	4.50339922240315	-0.307237087798301	0.380590497323015	0.682959506520613
Merged-chr17-31685650-3	chr17	31685541	31685741	+	804.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7710.0	NM_001278570	12954.0	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	3.53107083471683	3.7808830407477	3.41468275635719	3.41066330905119	3.45246661357026	3.40099811007424	3.51771101033786	3.99239993096722	0.227131634503551	0.664963322079892	0.861150670493325
Merged-chr13-44731205-4	chr13	44731112	44731312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360281)	promoter-TSS (NM_001360281)	-59.0	NM_001360281	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	5.87884805801591	6.32508295687173	5.673947296148	5.53019369799944	6.24427917012428	6.31150280662162	5.98423036635783	5.89922676075209	0.380145255092568	0.189667375486141	0.488646811920081
Merged-chr13-59667947-4	chr13	59667852	59668052	+	660.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035122, intron 1 of 9)	MTD|LTR|ERVL-MaLR	7832.0	NM_001035122	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	3.87906008131461	3.63691340865451	3.38654578578066	3.53430699745391	3.81471055356567	3.7467773101885	3.76903751151281	3.83095573134902	0.534432796053288	0.257604827563797	0.569440392056059
Merged-chr15-85610775-4	chr15	85610698	85610898	+	735.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28977.0	NM_009528	22422.0	Mm.306946	NM_009528	ENSMUSG00000022382	Wnt7b	Wnt-7b	wingless-type MMTV integration site family, member 7B	protein-coding	3.69522372472709	3.31772155259831	3.49166229554837	3.47237054593616	3.61307871283861	3.29270220459456	3.47813791451429	3.69352035590741	0.114883100320209	0.822067887066062	0.931996686031243
Merged-chr3-144617241-4	chr3	144617129	144617329	+	915.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46802.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	4.27649420546439	4.307057869891	4.32440857140832	4.55885616869623	4.63146216136967	4.54377745122805	4.25882429097243	4.78334231064451	0.415182209503733	0.281373818199041	0.593454634514327
Merged-chr15-101246999-3	chr15	101246908	101247108	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19838.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	4.92377558689221	5.00195222264708	4.88390754063338	5.23660313443932	5.67894857307001	4.98205347252083	5.63631814577987	5.72674469618917	0.912797151938388	0.00575866305055024	0.0527265085252271
Merged-chr12-110992336-4	chr12	110992251	110992451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2047.0	NR_036598	77878.0	Mm.293198	NR_036598	ENSMUSG00000113056	6030440G07Rik	-	RIKEN cDNA 6030440G07 gene	ncRNA	6.01283282166865	6.57959166428926	6.76060128582609	6.14964781975427	5.84666905514874	6.28076713279644	6.13481514826664	6.45384058769943	-0.323514253298848	0.248889532992761	0.560095451132502
Merged-chr7-43310626-3	chr7	43310516	43310716	+	969.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027264, intron 2 of 4)	intron (NM_027264, intron 2 of 4)	2684.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	4.67197158411891	4.46866816216995	4.71045246814548	5.35027738618503	4.78789949326538	4.34871606192976	4.2543694483484	4.41701681838137	-0.82445165423783	0.0555472508494401	0.246711454399869
Merged-chr3-132035403-4	chr3	132035370	132035570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49822.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	5.72818252446571	5.39111638196072	5.77460406299509	5.83821631328329	5.43587291163358	5.14264923274058	5.78851444411043	4.91274710412946	-0.568422358323193	0.0818182487377606	0.310450510523219
Merged-chr16-30787690-4	chr16	30787586	30787786	+	921.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187963.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	3.33969701178711	3.28983788327628	3.81826996901455	3.37543421161722	3.58752749942494	3.63701080145833	3.50595843611246	3.81581292562567	0.558614717920287	0.276068937596326	0.588116016284595
Merged-chr7-79887163-3	chr7	79887075	79887275	+	681.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009682, intron 4 of 5)	L1M7|LINE|L1	33465.0	NM_009682	11778.0	Mm.220173	NM_009682	ENSMUSG00000063801	Ap3s2	[s]3B	adaptor-related protein complex 3, sigma 2 subunit	protein-coding	3.19719146536162	3.24361221662518	2.92440031349283	2.96904691153687	3.59741895312949	3.31107291419005	3.64294429937492	3.2563491537486	1.3982168163345	0.0119786510340233	0.0898260010483294
Merged-chr11-110997481-5	chr11	110997477	110997677	+	930.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252209)	promoter-TSS (NM_001252209)	90.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	4.5626653536684	5.11314368995321	5.36905185338633	4.96320126257897	4.42349059254654	4.45011608252873	4.66963465244335	4.87725738052395	-0.861762429012135	0.0234564309846153	0.142190878986027
Merged-chr3-106788774-5	chr3	106788782	106788982	+	885.9799800000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007651, intron 1 of 7)	intron (NM_007651, intron 1 of 7)	1267.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	3.30313167815287	3.49525450974974	3.73294994298075	3.33980573699421	3.60435077809687	3.47974336647532	3.35367501272408	3.63617916077617	0.181974703019039	0.722930519782376	0.889303283749819
Merged-chr13-96437156-1	chr13	96437056	96437256	+	892.0	f0_balb.idr	intron (NM_001042714, intron 7 of 13)	MLT1H1|LTR|ERVL-MaLR	34004.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	3.6017810767592	3.03612705428418	3.258176937523	3.5407909665571	2.78988152338905	2.97616207070294	3.12870317979209	3.19871770213713	-1.40262283934563	0.026350266513289	0.153938412684619
Merged-chr4-126131499-2	chr4	126131399	126131599	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 6 of 10)	intron (NM_028800, intron 6 of 10)	-16504.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	3.29194878814853	3.46720584750697	3.40858118429829	3.39057934919586	3.24434817815057	3.46556062629077	3.21936838570085	3.65761487078814	0.0443026078971344	0.932986733969604	0.975869550884564
Merged-chr10-41490406-4	chr10	41490308	41490508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009213)	promoter-TSS (NM_009213)	-31.0	NM_028430	73075.0	Mm.359762	NM_028430	ENSMUSG00000078451	Ppil6	2900084F20Rik	peptidylprolyl isomerase (cyclophilin)-like 6	protein-coding	7.64061412462159	7.38575364666094	7.05944341117219	7.4043383554759	7.33203201912397	7.61540276133202	7.75751483464944	7.31211197013861	0.166364668383101	0.425674045257027	0.71712037270952
Merged-chr8-3284249-3	chr8	3284149	3284349	+	813.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4632.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	3.55475135572916	3.41011349526402	3.45648786597729	3.39854120774031	2.9650138664134	3.21524308475072	3.33618778290674	3.16833364633163	-1.06881348003582	0.0549002662266714	0.244769561525101
Merged-chr15-103183387-4	chr15	103183305	103183505	+	883.62085	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20121.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	4.53913110583101	4.76198757665126	4.41605235930877	4.30503567565269	4.42016575809957	4.25257957860031	4.51872212899193	4.49701680791573	-0.185332743459462	0.627726093480998	0.841290069815176
Merged-chr13-111966759-3	chr13	111966671	111966871	+	888.644409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98835.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	3.25724478375616	3.28857335560993	3.40167803892081	3.14707758332315	2.48072626881656	2.63927774239305	2.83274035000789	2.76909283468776	-3.23218674460036	7.26193545395813e-05	0.00154945234915254
Merged-chr10-128923536-1	chr10	128923436	128923636	+	1000.0	f0_c57.idr	promoter-TSS (NM_015740)	promoter-TSS (NM_015740)	-12.0	NM_015740	14533.0	Mm.30118	NM_015740	ENSMUSG00000090247	Bloc1s1	AI839753|BLOS1|Gcn5l1	biogenesis of lysosomal organelles complex-1, subunit 1	protein-coding	5.71523835463775	5.37987402738561	5.17802485573985	5.36609233404548	5.31049966234978	5.63582998423557	5.64040863069102	5.5657004917153	0.20313057975236	0.484126786176845	0.758271768363552
Merged-chr8-92856453-4	chr8	92856354	92856554	+	965.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357375, intron 1 of 12)	intron (NM_001357375, intron 1 of 12)	1121.0	NM_001357374	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	4.93324056199961	4.58508965380166	4.75755838930507	4.92245188966507	4.62128887146767	4.63971733942838	4.91004050698016	4.86312721732736	-0.110230965406897	0.748494504816648	0.900999421474581
Merged-chr2-129558745-4	chr2	129558666	129558866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-22164.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	5.99721439717249	6.82153496403196	5.79782807971035	5.84029088238877	6.38348296690027	6.46341822975217	6.25526681763525	6.31947480345477	0.254064041338253	0.401484070272808	0.699068828443655
Merged-chr15-66279497-4	chr15	66279407	66279607	+	894.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	6717.0	NM_152923	110862.0	Mm.255585	NM_152923	ENSMUSG00000056258	Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding	4.89501430102139	4.84446393799982	5.08130559690095	5.1091720856836	4.29935061495864	4.49919489636391	4.7685735954586	4.1484523689534	-1.18066283226297	0.00162417588667426	0.0198877026384977
Merged-chr6-87512450-2	chr6	87512350	87512550	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	L1M5|LINE|L1	-16123.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	2.74360283556294	2.4835282533917	2.57121561741807	2.50588123694284	2.35181393067785	2.32008360364448	2.29231006513735	2.5698771775234	-1.08741500171935	0.141717717420257	0.418839287836592
Merged-chr6-48602011-4	chr6	48601931	48602131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	8148.0	NM_001079904	58887.0	Mm.219183	NM_175099	ENSMUSG00000052751	Repin1	AI425994|Ap4|E430037F08Rik|Zfp-464|Zfp464	replication initiator 1	protein-coding	7.57648236926142	7.68800487970369	7.64783358786899	7.85830793377096	7.50591251760037	7.92333955035721	7.85625725144018	7.4983868772525	0.00113860239048097	0.995226816722231	0.998265838137867
Merged-chr1-156939112-3	chr1	156938966	156939166	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357391, intron 1 of 19)	CpG	321.0	NM_001159966	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	3.65819481182608	3.15561709569284	3.26734053656043	2.9826273717524	3.35103815473516	3.19035269984046	3.25514905238637	3.37696822222032	0.0565570565681388	0.922465142447159	0.971298693028147
Merged-chr3-82030547-3	chr3	82030462	82030662	+	771.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33640.0	NM_021370	58170.0	Mm.88839	NM_021370	ENSMUSG00000028008	Asic5	Accn5|Blinac|Inac	acid-sensing (proton-gated) ion channel family member 5	protein-coding	3.30762178256715	3.6029970900643	3.60350745021539	3.93139310360358	3.37384893848432	3.48633892592368	3.64023013414962	3.75075467901354	-0.244954530100456	0.645224985317207	0.850799912413769
Merged-chr1-78914112-2	chr1	78913993	78914193	+	596.0	f0_balb.idr|f1_balb.idr	intron (NR_151519, intron 3 of 3)	Lx8|LINE|L1	97182.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	2.66046421823834	2.719992528088	2.7203566529941	2.72978190886346	2.39850587853198	2.49181831475246	2.45696313212011	2.53159248476509	-1.35970567158571	0.0529959579275699	0.240108920508768
Merged-chr14-122633322-6	chr14	122633210	122633410	+	966.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 7 of 24)	intron (NR_153443, intron 7 of 24)	98982.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	4.29448266788931	3.59413509945069	4.17385146735897	3.88303093396196	4.24400539751953	3.84079700289803	3.92505542536068	4.08337185639333	0.0898422881796993	0.849176713094094	0.943016077779251
Merged-chr5-117417163-4	chr5	117417071	117417271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	MTC|LTR|ERVL-MaLR	3169.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	7.30931450728792	7.20882208091256	7.6480220249438	7.28719442857602	7.50522460813735	7.60093977102171	7.68215185354936	7.71457475336506	0.341994339460628	0.0665353539803409	0.274912634873552
Merged-chr6-83914389-4	chr6	83914292	83914492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008717)	promoter-TSS (NM_008717)	39.0	NM_001355284	18139.0	Mm.132392	NM_008717	ENSMUSG00000030016	Zfp638	AI323587|Np220|Zfml|Znf638|mNP220	zinc finger protein 638	protein-coding	6.65606997869441	6.5604718032708	6.20300782923749	6.28921888671916	6.79276094801732	6.4617926983753	6.59373345526792	6.44588255701429	0.229488073477764	0.32085351959128	0.632614960000768
Merged-chr15-95850744-4	chr15	95850629	95850829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253813, intron 2 of 20)	L1MB3|LINE|L1	-20657.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	6.87443237338717	7.35868481076385	6.79206491872217	6.44519953254078	6.91265806999631	6.94007936722301	6.9802635898355	6.75811285835935	-0.00353138935083675	0.988686539113244	0.995492522898152
Merged-chr8-75076473-4	chr8	75076330	75076530	+	860.7583619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17188.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	3.81379352546915	3.42263718904003	3.81435817371021	3.48040704764498	3.81728286513585	3.83150605996731	3.79802715939248	3.95182222944535	0.654288639028834	0.163533671709494	0.453277383902263
Merged-chr14-121379945-3	chr14	121379813	121380013	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145465)	promoter-TSS (NM_145465)	-683.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	5.0252343349349	4.51785727594151	5.24488239966215	4.95281739199986	5.00764589001579	5.09597779929159	4.65442937668872	5.63107777942105	0.357350860044036	0.353850324610536	0.660673323809473
Merged-chr7-17027021-4	chr7	17026923	17027123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011155, intron 1 of 12)	L2b|LINE|L2	891.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	5.71053248131348	5.36758172983883	5.63014299448748	5.82141468990376	6.24497799436404	5.96421383017459	6.04351199877276	6.183286505435	0.739402468509235	0.00442549468444978	0.0433947218824151
Merged-chr18-31766922-4	chr18	31766813	31767013	+	605.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153515, intron 2 of 7)	intron (NM_153515, intron 2 of 7)	6297.0	NM_001242430	225339.0	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	3.61497413380479	3.7804601333816	3.78847067529962	3.37805290106555	3.80961355421215	4.01656687097686	4.29269001450107	4.15926189702314	1.25647112663066	0.00724627401668532	0.0624509672156005
Merged-chr13-91224662-4	chr13	91224589	91224789	+	986.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025770)	promoter-TSS (NM_025770)	-702.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	5.98776341659462	6.08179378465384	5.55538405108779	5.55951810837126	6.02816315035276	5.81497624550386	5.66257268459504	5.36689535232671	-0.100367367921337	0.73891081816186	0.897069647209902
Merged-chr19-16047175-4	chr19	16047049	16047249	+	906.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62074.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	5.08882557716206	4.39825823823683	5.06241975455158	4.94707638422668	4.17209918348093	4.25334874243755	4.26641561491786	4.33201072214004	-1.46238004183081	0.000238004724284946	0.00419330155195003
Merged-chr7-122329786-4	chr7	122329689	122329889	+	946.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	40664.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	5.1132127104762	5.25164920592507	4.79468058927453	5.01089871847656	4.51369450635994	5.04876523944843	4.95770733943604	5.28581546893098	-0.160814919632253	0.651737431081987	0.854170845276832
Merged-chr16-5203413-4	chr16	5203303	5203503	+	915.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013796, exon 2 of 10)	exon (NM_013796, exon 2 of 10)	609.0	NM_013796	27426.0	Mm.215641	NM_013796	ENSMUSG00000023143	Nagpa	AI596180|UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	protein-coding	4.34934744994714	4.20114769438049	4.17497382356353	3.8694824449049	4.36703198275874	4.09647203643101	4.24631361594478	4.42633467892951	0.375516781432326	0.363562196423996	0.668595622768728
Merged-chr1-21070242-4	chr1	21070146	21070346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177409, intron 1 of 10)	intron (NM_177409, intron 1 of 10)	8979.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	5.62843541476931	5.43213176337911	5.47398578865092	5.74159210654858	5.25151937149522	5.30595120187021	5.30169812863865	5.38467718092042	-0.490658199896833	0.0797628728903641	0.305790351785
Merged-chr2-167823593-4	chr2	167823465	167823665	+	795.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108762.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	3.2694647847922	3.41722542243385	3.50028789634627	3.49692128838083	3.49139179985561	3.56051004227574	3.43312796399833	3.38840652334183	0.13601793021937	0.786399868216485	0.916926763301385
Merged-chr17-74508818-4	chr17	74508712	74508912	+	734.354187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	19319.0	NM_026417	67864.0	Mm.41891	NM_026417	ENSMUSG00000024072	Yipf4	2310034L04Rik	Yip1 domain family, member 4	protein-coding	4.52864010560435	4.15630036684831	4.12784160311262	3.93698775911607	3.95145709101839	4.20535853869363	4.36298547227773	3.86534648264521	-0.222421417290507	0.618451896077654	0.836000920352511
Merged-chr4-155847812-2	chr4	155847712	155847912	+	995.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010091, exon 1 of 15)	exon (NM_010091, exon 1 of 15)	410.0	NM_001356381	13542.0	Mm.3400	NM_010091	ENSMUSG00000029071	Dvl1	Dvl|mKIAA4029	dishevelled segment polarity protein 1	protein-coding	3.45912935682227	3.49509051146038	3.62822673376832	3.63676617063232	3.78629715274314	3.63355762040022	3.56062726203406	3.77498352419172	0.415059843223565	0.382131652601699	0.684238214631303
Merged-chr6-120091106-4	chr6	120090994	120091194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2286.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	6.59579210865589	6.43674604125144	6.39739040227309	6.91177490822755	6.48715853450732	6.27232537618242	6.43443208133564	6.4628743618705	-0.292142656289004	0.212548681918787	0.517487068679264
Merged-chr15-27647936-3	chr15	27647842	27648042	+	929.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	-17249.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	4.03284910241336	3.69991296276137	3.9430880314303	3.96549375123759	3.78781761481859	3.80268875640609	3.97149888818847	3.68248334146123	-0.293786074685955	0.51372259147083	0.776626777135012
Merged-chr8-46835770-4	chr8	46835656	46835856	+	839.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	96011.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	3.56016679363257	3.4413216165414	3.9292736155801	3.76871132238071	3.58391566873435	3.95573369769228	4.04059526646522	3.88024086064981	0.522523367485027	0.283669867078351	0.595728620128502
Merged-chr4-59547649-3	chr4	59547588	59547788	+	819.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144904, intron 1 of 14)	intron (NM_144904, intron 1 of 14)	1676.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	3.80747547997278	3.37658869188115	3.24173451997707	3.4362069407218	3.67312060546415	3.72820102586368	3.69685631002664	3.80567208924969	0.776871270824333	0.119787659176766	0.383121356663358
Merged-chr4-129840254-1	chr4	129840154	129840354	+	939.0	f0_balb.idr	intron (NM_008974, intron 2 of 5)	intron (NM_008974, intron 2 of 5)	19546.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	3.43601088977979	3.02050073160426	3.06845771377146	3.29782385915626	2.96947463963493	3.11509200539336	2.93144498997616	2.93916133661477	-0.942485755050325	0.114410963934964	0.374111448085574
Merged-chr10-121740305-4	chr10	121740155	121740355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359720, intron 1 of 2)	intron (NM_001359720, intron 1 of 2)	325.0	NM_173022	270802.0	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	4.713390414092	4.92614377385552	4.9755956877228	5.0548366965324	4.6659878499892	4.93055123291812	5.01669737713706	5.0695448287214	-0.0274893440718315	0.9342254853059	0.976332045936076
Merged-chr4-106316655-4	chr4	106316548	106316748	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183225, exon 1 of 68)	exon (NM_183225, exon 1 of 68)	435.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	4.53504172075356	3.91273659868931	4.38575145135958	4.04080826206158	4.30168703139121	3.91185467643968	4.00252338750705	4.56749524197161	-0.0217763782913993	0.962106866163561	0.986416651799321
Merged-chr14-67188506-4	chr14	67188414	67188614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44778.0	NM_010095	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	6.37084940475148	6.45255074466436	6.04615932009998	5.9304597810493	6.13614587860469	6.24374926467778	6.19737081615102	6.04187230615235	-0.0784176132382698	0.754274531182393	0.903237597638824
Merged-chr13-3771659-4	chr13	3771557	3771757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32661.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	4.98138344146916	5.1347976296239	5.19012485419985	4.90972806206854	4.85948257520725	4.21806587432867	4.58835356334302	4.56253886931478	-0.950882419036674	0.0104398342080222	0.0814709965017886
Merged-chr13-24791504-4	chr13	24791411	24791611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-10146.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	7.79821539348405	7.90133020983444	8.38409953644973	8.25009707808923	7.89696888060056	8.0846369555735	8.0902154140878	8.00060862277988	-0.11814693387314	0.535347434704447	0.789680348939749
Merged-chr10-117776107-4	chr10	117776008	117776208	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134010, intron 11 of 27)	MTC|LTR|ERVL-MaLR	16597.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	5.19172468484942	5.81740036679639	5.95100487846554	5.35855683089457	5.92815814893519	5.81779956770409	6.45822437141814	5.58108721550004	0.613180695741891	0.0617334186066051	0.26285356242146
Merged-chr10-82973767-3	chr10	82973668	82973868	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-11729.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	3.3505977930949	3.75169597152894	3.74531039606171	3.87109562188674	2.76173981383913	3.14110140747271	3.0179042639831	2.87206635578924	-3.43043163839153	3.75569369441068e-06	0.000115127700893393
Merged-chr5-64619993-4	chr5	64619893	64620093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-9294.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	5.74927050893417	5.9623067904465	5.7761584893265	5.82020689166325	6.12054134338793	6.32416766634823	5.93574643946724	6.0471593914539	0.443964530315782	0.0679612598409181	0.278284215280257
Merged-chr3-95754931-4	chr3	95754814	95755014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163618)	promoter-TSS (NM_001163618)	63.0	NR_151589	71807.0	Mm.271754	NM_027931	ENSMUSG00000028107	Tars2	2610024N01Rik|AI429208|Tarsl1|thrRS	threonyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding	6.33944582013918	6.16363844331434	5.64932400857383	6.16441242988972	6.22959663685128	6.27045159606373	6.29085410610236	5.98149378362325	0.13980226818813	0.585128581672826	0.818007803493864
Merged-chr4-149756623-4	chr4	149756563	149756763	+	782.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027460, intron 2 of 6)	B1_Mm|SINE|Alu	17604.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	3.45131750826911	3.17298469361426	3.16385094833925	3.16471393438627	3.14907445271797	3.4588351168402	3.43723088815159	3.44978140296548	0.491478806226699	0.359747336314175	0.665448431691961
Merged-chr1-37317312-4	chr1	37317221	37317421	+	810.270813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	17483.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	4.14237432944126	4.41075069930429	4.35126583963501	4.34840041479644	4.17103585762782	3.90073939503155	3.70559158580237	3.71684004207054	-1.10054626009595	0.0154415524756887	0.107042682476339
Merged-chr11-70562908-4	chr11	70562823	70563023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045959)	promoter-TSS (NM_001045959)	42.0	NM_016713	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	5.43660985541425	5.69409146599305	5.04367905441134	5.28033632594897	5.48339112431978	5.43193932730059	5.38197830299319	5.6172472012935	0.172063937171561	0.563307252502501	0.806221125771298
Merged-chr2-25428577-4	chr2	25428466	25428666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007379)	promoter-TSS (NM_007379)	-108.0	NM_007379	11305.0	Mm.2210	NM_007379	ENSMUSG00000026944	Abca2	AI413825|Abc2|D2H0S1474E|mKIAA1062	ATP-binding cassette, sub-family A (ABC1), member 2	protein-coding	7.35369660284164	7.37752595967862	6.62885545914244	6.99676839260042	7.34926864610678	7.11103658978427	7.0625005620987	7.13983645312087	0.0717725077299085	0.753580614242468	0.902798885097597
Merged-chr2-85007900-4	chr2	85007784	85007984	+	779.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145526, intron 8 of 11)	B2_Mm2|SINE|B2	19669.0	NM_016914	53856.0	Mm.19943	NM_016914	ENSMUSG00000027072	Prg3	MBP2|MBPH	proteoglycan 3	protein-coding	3.77113889108513	3.62336847742233	3.72147345169596	3.64551596150328	3.46402415281425	3.48666585528573	3.65437429013349	4.07344331794658	0.00710431109052004	0.988604215012652	0.995485158804102
Merged-chr2-28591669-4	chr2	28591575	28591775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	-8396.0	NM_001290484	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	8.13080187580636	8.54559402978949	8.29085694029956	7.80301826278923	8.25343806828173	8.25865749720382	8.18399312395022	7.93764548245705	-0.0629854258683767	0.757191256448097	0.90457703435425
Merged-chr10-80071836-2	chr10	80071736	80071936	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 5 of 31)	intron (NM_001359635, intron 5 of 31)	3603.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	3.07138705097956	3.13380433865093	3.19366395185896	3.10066435830161	3.13176805287801	3.24491073740882	3.39277333848708	3.19199617617529	0.448700877129672	0.406725299697919	0.703120904143348
Merged-chr9-65549323-3	chr9	65549221	65549421	+	864.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30766.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	4.26700945825938	4.11117721009119	4.10798167270922	4.14596472013543	3.66580480757198	3.50382836444124	3.90818229666676	3.52430130341838	-1.44349460371415	0.00230343497236133	0.0260827549948627
Merged-chr9-107554579-4	chr9	107554481	107554681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019713)	promoter-TSS (NM_019713)	-2.0	NM_019713	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	8.37380543014444	8.52071052053701	8.49342432627191	8.07281246680137	8.57919131971343	8.70522418022646	8.39397118475954	8.55941278317031	0.24473678972615	0.159614923167012	0.447290863941044
Merged-chr4-144890788-4	chr4	144890676	144890876	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2051.0	NM_001172424	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	4.75096989406345	4.79475102132014	4.24506645490503	4.49230489423116	5.07328822728103	5.06770211999909	4.76649914242402	4.95913117980191	0.80329902207202	0.022582203743595	0.138804347597384
Merged-chr18-58568525-4	chr18	58568459	58568659	+	965.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081072, intron 1 of 9)	intron (NM_001081072, intron 1 of 9)	12319.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	4.72385799427882	4.72602447064692	4.68828369631689	4.68553102304482	4.50610408347567	4.57554265737036	4.55144044976001	4.2508541530086	-0.502928283461895	0.157260936478624	0.443753268488086
Merged-chr16-4863089-4	chr16	4863008	4863208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030192, exon 12 of 16)	exon (NM_030192, exon 12 of 16)	16743.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	5.8260904316377	6.25033658537838	5.99457388026403	6.21916962632878	6.02366691463535	6.17105649193015	6.59719370497655	5.7165671811894	0.111657207017134	0.692838788613774	0.875149902126668
Merged-chr1-131200214-4	chr1	131200109	131200309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311094)	promoter-TSS (NM_001311094)	-24.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	7.9607857071629	8.15448791664795	7.70982376843987	7.93758434936647	8.07261021824192	7.61459807787919	8.20126850670935	7.9498253634062	0.0381716791527731	0.843463969412314	0.940545837178831
Merged-chr5-138264016-4	chr5	138263917	138264117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153161)	promoter-TSS (NM_153161)	-28.0	NR_045821	69004.0	Mm.439868	NR_045821	ENSMUSG00000085227	6330418K02Rik	-	RIKEN cDNA 6330418K02 gene	ncRNA	5.82248280016013	5.96266487285933	6.04112738684495	5.66230605464316	5.7389422891512	5.67944520430421	5.86280189667716	5.93278447319348	-0.0982733111095262	0.703519611391767	0.880741625705568
Merged-chr9-31163289-5	chr9	31163196	31163396	+	859.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357698, intron 9 of 17)	intron (NM_001357698, intron 9 of 17)	-31497.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	2.92765997993152	2.93371969164137	3.15207540919321	3.12320898409593	2.64543342506219	2.9729017173659	2.79092220190808	2.79824984972127	-1.10589273526014	0.0822833066521372	0.3113851605185
Merged-chr3-62496056-4	chr3	62495958	62496158	+	839.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028136, intron 5 of 24)	intron (NM_028136, intron 5 of 24)	10930.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	4.12387629796693	3.77916296561948	3.92195671637495	4.11283679048658	4.37813631835388	4.24973278018171	4.35790500246064	4.16796992717961	0.742229173302473	0.0722304379369904	0.288805410261709
Merged-chr2-152830679-4	chr2	152830570	152830770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289717)	promoter-TSS (NM_001289717)	47.0	NM_001289716	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	7.17538991392127	7.58580923467925	7.1766320198107	7.46304920344997	7.33709291553439	7.2453442658872	7.45553077113674	7.17160812646254	-0.0848125860512694	0.665144273054367	0.861290986041893
Merged-chr17-12781413-4	chr17	12781297	12781497	+	939.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027784, intron 2 of 2)	intron (NR_027784, intron 2 of 2)	-11691.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	5.2401812360752	4.94425603570145	5.24110319479157	4.93461226810246	4.89728022337706	4.62968888706145	4.7336792506416	4.17054172752509	-0.906824249932465	0.0168350113070614	0.113776991058234
Merged-chr10-60268962-4	chr10	60268870	60269070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-8658.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	5.53519543581408	5.72137251705587	5.72996229035454	6.31742696041973	6.03450607078408	5.82744109000335	5.89021366273945	5.7513247008352	-0.00667367760733401	0.98206076449208	0.993573193675204
Merged-chr2-143035175-4	chr2	143035061	143035261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27908.0	NM_021335	20639.0	Mm.1323	NM_021335	ENSMUSG00000008333	Snrpb2	2810052G09Rik	U2 small nuclear ribonucleoprotein B	protein-coding	6.37912561201065	6.44143409184736	6.77488946371887	7.18669494265461	6.72983279622956	6.7861206460064	6.89860370723687	6.66721227326395	0.0208767132537305	0.934686420372811	0.97635719558922
Merged-chr6-97486994-3	chr6	97486899	97487099	+	909.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	821.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.19975643538755	3.27143735795454	3.60690976841746	3.1385034620081	3.6261422723716	3.62062480724843	3.31753525074979	3.78973254003187	0.985187653953083	0.0637080895175422	0.268086201819044
Merged-chr14-73234710-4	chr14	73234615	73234815	+	958.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	-3176.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	4.68020244956167	4.75242773705987	4.97587466912869	5.18561183451451	4.71898041938208	4.68334178558417	4.91862134611012	4.93920016379631	-0.233393525642162	0.503101550075831	0.770196047593237
Merged-chr2-153208323-4	chr2	153208223	153208423	+	927.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 17 of 17)	MTC|LTR|ERVL-MaLR	17118.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	3.92724737390516	4.24165481010479	4.43257963742179	4.12364569324532	4.38997014344329	4.10345465711885	4.55145492385387	4.03193632734191	0.253656489638994	0.550472099433999	0.798632172919405
Merged-chr8-105715195-4	chr8	105715103	105715303	+	857.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027469)	TTS (NM_027469)	6914.0	NM_027655	71046.0	Mm.280888	NM_027655	ENSMUSG00000013158	4933405L10Rik	-	RIKEN cDNA 4933405L10 gene	protein-coding	3.86348545027584	3.85351695413709	3.69941803081223	4.2037443089019	4.11262397359242	4.03541683813981	3.79657550746005	4.14017531883673	0.248761353790564	0.590376307670177	0.820919766532264
Merged-chr4-134924586-4	chr4	134924524	134924724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023665, intron 2 of 4)	intron (NM_023665, intron 2 of 4)	999.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	6.30037592101025	6.44987646213125	5.90483318549923	6.16515624388242	6.77485203026374	6.13528903106242	6.72251203416152	6.59839061801551	0.544474156153151	0.03107284550508	0.171322568457696
Merged-chr7-3601336-4	chr7	3601174	3601374	+	807.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14883.0	NM_175632	232790.0	Mm.358882	NM_175632	ENSMUSG00000054594	Oscar	mOSCAR|mOSCAR-M1|mOSCAR-M2|mOSCAR-M3	osteoclast associated receptor	protein-coding	3.15798759444701	2.94251399800731	2.97905614432185	2.89846022358618	3.19573549284161	3.08796844786526	3.1998196127457	3.04012958010918	0.590835773442677	0.295779092874019	0.607667841934993
Merged-chr4-105478455-4	chr4	105478372	105478572	+	957.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	321125.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.59366095087714	4.51401944644718	4.79327516652408	5.05515890465247	4.82767819367014	4.54146136051616	4.77050915194125	5.1127548702646	0.115210857195341	0.756955021774585	0.904554066545557
Merged-chr11-53794089-4	chr11	53793973	53794173	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	23600.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	4.88732525424667	4.67287040201176	5.15270688017858	5.01563542883113	4.94606036921988	5.02582087305853	4.66843916038658	5.26291424519472	0.0894519493447713	0.793770012819785	0.92022175040272
Merged-chr18-84806629-3	chr18	84806510	84806710	+	688.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44728.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	3.18315606597156	3.17159234653716	3.12343697731034	3.11643965448731	2.90499560237461	3.29608257259385	3.11228219502355	3.44590060386526	0.201167560637368	0.725706126347589	0.890921883682774
Merged-chr17-55957351-3	chr17	55957249	55957449	+	775.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_015766)	TTS (NM_015766)	-1838.0	NM_028381	72886.0	Mm.22796	NM_028381	ENSMUSG00000003208	Ccdc94	2900016D05Rik|AI413813	coiled-coil domain containing 94	protein-coding	3.70568572596022	3.78362664776208	3.90419133795982	3.36340628954521	3.67999858096501	3.93023530704426	3.74292438382299	3.75643610448874	0.261311752172383	0.591482752997509	0.821646191951789
Merged-chr7-38227321-2	chr7	38227221	38227421	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024413, intron 1 of 1)	intron (NM_024413, intron 1 of 1)	673.0	NM_024413	72287.0	Mm.333798	NM_024413	ENSMUSG00000074170	Plekhf1	1810013P09Rik|APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology domain containing, family F (with FYVE domain) member 1	protein-coding	3.24595820896144	3.22312366634517	3.24640090604504	2.99251725183747	2.98768871533093	3.2405795477971	3.28776839706229	3.1873493629032	0.0140551825890175	0.980038013070165	0.992772119265666
Merged-chr1-154034315-4	chr1	154034209	154034409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134380.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	6.19014239319689	6.43151733688868	6.21120684015663	6.48263161383041	6.21720949319122	6.4819235013002	6.32794157498495	5.9678179645929	-0.133725446097819	0.575533896659988	0.813074135248517
Merged-chr2-35327500-4	chr2	35327395	35327595	+	894.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	9514.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	4.56420959751392	4.73846059886169	4.31929520991004	4.48029628203177	4.32972081316075	3.82165368582428	4.15873514904443	4.59853979390002	-0.639612478472479	0.136855742614818	0.411427913943067
Merged-chr5-24814160-4	chr5	24814064	24814264	+	992.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053075, intron 2 of 7)	intron (NM_053075, intron 2 of 7)	28197.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	4.74866067560135	4.86520846440299	4.70916020340104	4.99769990390083	5.14915275160482	4.71226957435679	5.00979326993414	5.06219570663865	0.303290453862003	0.362518646150629	0.667677043867715
Merged-chr4-44020206-3	chr4	44020112	44020312	+	713.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080384, intron 4 of 5)	intron (NM_001080384, intron 4 of 5)	7562.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	3.41151589564496	3.23997696677369	3.5187181571662	3.82895605772732	3.10324863846896	3.40880489546938	3.50400485721843	3.16662092529732	-0.793521063888229	0.165698819748056	0.456574842387784
Merged-chr14-93701696-3	chr14	93701594	93701794	+	967.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	188975.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	3.36817682003496	3.14576959982428	3.42086410246639	3.42216967441109	3.08870077649523	3.42745328862725	3.12513874030387	3.13408575464512	-0.56462193902834	0.308945277516238	0.621321049595351
Merged-chr16-94566232-4	chr16	94566123	94566323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-3983.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	6.09045714346228	6.84735078652179	6.09154083629232	5.61443857265365	5.94860057750275	6.47912892771369	6.12138941419331	5.83215498448882	-0.187363926285784	0.573139253062447	0.811692154196247
Merged-chr1-85900687-3	chr1	85900590	85900790	+	874.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	6180.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	3.27472026248181	3.11076320419213	3.44881133908892	3.07889579136208	3.35631524905897	3.61963118927993	3.53738487420934	3.55073425168857	1.02451560627517	0.0509333675677485	0.234122452057137
Merged-chr6-114458392-4	chr6	114458272	114458472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317124)	promoter-TSS (NM_001317124)	-150.0	NM_001317124	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	7.9021942082555	8.13511352436573	7.71635370598655	7.84304443895878	7.89604610846252	8.12370861297093	7.96267808757277	7.95480772262925	0.0974983272794568	0.574146104175292	0.812108092694771
Merged-chr3-133091824-4	chr3	133091714	133091914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027927)	promoter-TSS (NM_027927)	11.0	NM_026231	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	7.1062481737684	7.26894978221106	6.91683343036102	7.08440012944689	7.43477694755449	7.17316815331676	7.20593592385091	7.09060634571591	0.189769221069646	0.331107824185877	0.642297043289104
Merged-chr6-122872990-4	chr6	122872870	122873070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1587.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	7.29787701234505	7.22866417820302	7.40743776689916	7.21241937808269	7.12012228238421	7.39082063632306	7.17789715445289	6.88420247201771	-0.178302831926561	0.359974926852513	0.665611988334495
Merged-chr15-68258164-4	chr15	68258055	68258255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152182, intron 1 of 13)	intron (NR_152182, intron 1 of 13)	701.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	8.01483414796906	8.16164570152746	8.1770946698625	8.37562342571263	8.30818771673386	8.05543716605964	8.35889385346529	8.01765835955561	0.00176562453595971	0.991964260026459	0.996930115575037
Merged-chr13-45267560-4	chr13	45267463	45267663	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3b|LINE|CR1	-122179.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	6.50185434506671	5.67714220518953	6.8653040859693	7.07057637585492	5.08938593886421	4.85327828277158	5.14859115643079	5.64100074416639	-2.27996041984149	3.14593902612278e-05	0.000756247193314398
Merged-chr7-99535052-4	chr7	99534975	99535175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177231)	promoter-TSS (NM_177231)	-411.0	NM_178220	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	5.26892080461485	5.0738953871137	4.81481873225727	5.25994044165505	5.04561310383756	4.53933139810577	4.48869298147677	5.18161430649351	-0.517236406477252	0.163138525113108	0.452706698401916
Merged-chr2-180678830-4	chr2	180678749	180678949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111965, intron 5 of 12)	intron (NR_111965, intron 5 of 12)	13199.0	NR_111965	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	5.79251473400042	5.84544274140899	5.97661606417569	6.11353834242664	5.75512291854405	5.84090772814091	5.85844777440431	5.88420928618994	-0.194111723747217	0.436091506373414	0.724990940109308
Merged-chr18-25461311-4	chr18	25461200	25461400	+	911.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033532, intron 10 of 10)	intron (NM_001033532, intron 10 of 10)	218448.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	4.25312559200885	4.42449596882223	4.5552636848273	4.21253677222597	4.83617415551566	4.6477868297395	4.41430362634602	4.04196471725814	0.380557227998563	0.358236212320554	0.664320653179664
Merged-chr8-105854977-4	chr8	105854877	105855077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021513)	promoter-TSS (NM_021513)	-126.0	NM_021513	59016.0	Mm.286598	NM_021513	ENSMUSG00000036442	Thap11	2810036E22Rik|AB041579|CTG-B43a|CTG-B45d|Ronin	THAP domain containing 11	protein-coding	6.15751445778356	6.25673540541642	6.32821765803956	6.06967036581251	6.11446529254227	6.33427255799743	5.93234108881135	6.39223730978408	0.0047246046732742	0.98426582007906	0.994294815860951
Merged-chr1-32252478-3	chr1	32252377	32252577	+	861.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133235, intron 2 of 8)	(CAAAA)n|Simple_repeat|Simple_repeat	79755.0	NM_133235	170771.0	Mm.336594	NM_133235	ENSMUSG00000026058	Khdrbs2	6330586C16Rik|Slim1|Slm-1|Slm1|TG-RP135|Tg(LRRK2*R1441G)135Cjli|mSLM-1	KH domain containing, RNA binding, signal transduction associated 2	protein-coding	4.28143130874103	3.86656378732668	4.39031055558891	3.78556351665847	3.85110163486218	3.84425422215466	3.76499221791214	3.59960187082501	-0.909849585383285	0.0612906510041482	0.261955521065466
Merged-chr4-47294042-1	chr4	47293942	47294142	+	682.0	f0_balb.idr	intron (NM_009928, intron 28 of 39)	intron (NM_009928, intron 28 of 39)	-59180.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	3.54257164827335	3.57497666268204	3.49102250252162	3.55799289813246	3.16491425578578	3.49403237797757	3.24799133178011	3.37833750879102	-0.790589604050507	0.128808760495709	0.399323987949653
Merged-chr1-161058692-4	chr1	161058588	161058788	+	855.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172644, intron 7 of 16)	intron (NM_172644, intron 7 of 16)	11972.0	NM_172644	226539.0	Mm.28125	NM_172644	ENSMUSG00000026709	Dars2	5830468K18Rik|aspRS	aspartyl-tRNA synthetase 2 (mitochondrial)	protein-coding	4.08356376324534	3.92210748958617	4.03666464934938	4.27737204204795	4.01942850426195	3.88892747731879	4.06656527315063	4.29535225731054	-0.0619063185658957	0.885254246631906	0.956964796206656
Merged-chr13-112530002-4	chr13	112529872	112530072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139299, intron 14 of 16)	intron (NM_139299, intron 14 of 16)	50690.0	NM_139299	218624.0	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	6.94340062520386	6.42223319411572	6.89340243175649	6.88967502123658	6.56700127980652	6.82615035665683	7.22742973977421	6.70604691125775	0.0668142274751937	0.782627735733322	0.91529005173258
Merged-chr10-75836228-4	chr10	75836116	75836316	+	888.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1335.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	4.47124841669036	4.01764554365515	4.13575302636779	4.138703633533	4.24856143744579	4.21090701206836	4.25390466666241	4.354054564311	0.181545919464387	0.649446067657527	0.852737901674878
Merged-chr10-16652591-4	chr10	16652491	16652691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	443191.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	6.06712436186242	6.36109290900017	6.13540649662609	6.35373793786798	6.86774408802058	6.80912925159851	6.49329151922039	6.35081119236327	0.598196159912613	0.0120514832981825	0.0902105930887926
Merged-chr7-145050914-4	chr7	145050805	145051005	+	889.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110980.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	4.79134083380416	4.27193584534784	4.27962436057881	4.77592047851113	4.09949989670596	4.40859247262851	4.73596909831884	4.37037255324156	-0.327729028142521	0.43522343924725	0.724494615589096
Merged-chr7-109170651-4	chr7	109170554	109170754	+	874.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302206)	promoter-TSS (NM_001302206)	-135.0	NM_057173	109594.0	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	4.06796140111562	4.37426826914596	4.30574378868028	4.48735601111313	4.34214192474208	4.38837007644746	4.32864338200659	3.95805069137641	-0.151666012134094	0.711070140972728	0.884240356833917
Merged-chr10-17767102-3	chr10	17767003	17767203	+	960.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29116.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	4.17112111942205	4.53829292312682	4.58940426341167	4.56325375190353	3.57459613279414	3.99541485887064	3.39604571136053	3.68715217433055	-2.28629570425488	4.44942675776644e-06	0.000133687525196732
Merged-chr16-91549258-3	chr16	91549156	91549356	+	768.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008338, intron 1 of 6)	IMPB_01|Satellite|Satellite	2162.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	3.32222135687234	3.21080077619495	3.25894371754077	3.01186470671874	3.64690564634181	3.72187082660332	3.63501493843201	3.69651686874511	1.68880600482265	0.000826599968925255	0.0115479017052268
Merged-chr8-120760060-4	chr8	120759971	120760171	+	921.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21432.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	4.80451161846543	4.65440799769333	4.77004091649291	4.8204084131533	4.587977950667	4.70946782808883	4.47137155670308	4.53214390087817	-0.410387313331825	0.232501865754675	0.542100704355084
Merged-chr13-93772207-4	chr13	93772107	93772307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009712, intron 1 of 7)	intron (NM_009712, intron 1 of 7)	528.0	NM_009712	11881.0	Mm.300178	NM_009712	ENSMUSG00000042082	Arsb	1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1	arylsulfatase B	protein-coding	6.69917579889137	6.35677542023558	6.04093174251676	6.52270362170744	6.34284483564106	6.39270360521202	6.50432373085331	6.46831806848235	-0.00993929151648309	0.966450088163475	0.988139972127125
Merged-chr5-147866360-4	chr5	147866299	147866499	+	672.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025624, intron 2 of 5)	ORR1A2-int|LTR|ERVL-MaLR	5771.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	3.01923105450549	2.9722132454101	2.81914335334758	2.79823114962426	3.02536621280935	3.06632103573138	3.23269595206595	3.34452330887785	1.12022398513505	0.05331722284618	0.240914541752208
Merged-chr18-73800057-3	chr18	73799965	73800165	+	776.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145494, intron 3 of 15)	intron (NM_145494, intron 3 of 15)	15327.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	4.26263685227416	4.06859314911739	4.14191624821517	4.79360607019139	3.25348231854359	3.47474371488086	3.55127662411462	3.49560164930754	-2.95007826584873	1.74703299136126e-07	7.12619262418929e-06
Merged-chr7-139377047-2	chr7	139376947	139377147	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12062.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	3.49464865904106	3.21385677150318	3.28558603047753	2.92465106394733	3.01897379504294	3.34187120221576	3.09217241460521	3.44380482576974	-0.0193298711892847	0.973955873442985	0.990691238021785
Merged-chr3-116598233-4	chr3	116598181	116598381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030016, intron 1 of 11)	intron (NM_030016, intron 1 of 11)	3323.0	NM_001289571	72776.0	Mm.440836	NM_028349	ENSMUSG00000027959	Sass6	2810453L12Rik	SAS-6 centriolar assembly protein	protein-coding	4.49556630067523	4.34616525679601	4.41028038970306	4.73959671217948	4.36584136748989	4.58376091721578	4.59387106125956	4.68569273043929	0.0697074665999966	0.852996660560341	0.944678751070911
Merged-chr19-24281841-4	chr19	24281745	24281945	+	971.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1259.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	5.24956236225415	5.20216024403215	5.06750154146933	5.12630954844345	4.85715690863466	4.82401214966926	4.86866234037231	5.0640479549599	-0.498742712302218	0.107971921813587	0.362559597364667
Merged-chr8-13501397-4	chr8	13501292	13501492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-6857.0	NM_019521	14456.0	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	6.30925057849973	6.26612790289067	6.48396918914863	6.64467183727631	6.14340370147328	6.24245058836698	6.20173509793215	6.52700974807652	-0.246394673641318	0.297231389043186	0.609367580883809
Merged-chr2-91182927-4	chr2	91182850	91183050	+	868.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145527)	promoter-TSS (NM_145527)	97.0	NM_001177719	228355.0	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	3.69923188811645	4.00697380345203	3.85417747168679	3.81505412330174	3.90136269154562	3.6401332314635	3.685461157265	3.80254886092647	-0.233585019117429	0.609917912436665	0.831370709690522
Merged-chr6-46144667-4	chr6	46144592	46144792	+	972.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 8 of 23)	A-rich|Low_complexity|Low_complexity	1084631.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	5.40491078557714	5.12804998164934	5.86284839677907	5.85838379594523	5.33100816075726	5.36273208104049	4.9363715451258	5.43072036783197	-0.578385280301179	0.0810055770651091	0.3087963110487
Merged-chr5-115319848-4	chr5	115319747	115319947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131932, exon 2 of 2)	non-coding (NR_131932, exon 2 of 2)	-7330.0	NM_025573	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	5.4050499574075	5.51021392481958	5.19531972824901	5.34177118780997	5.29590122382205	5.43354336904162	5.43268715324399	4.72494485118089	-0.20826273265135	0.515361052716676	0.777533445789008
Merged-chr2-93457916-4	chr2	93457806	93458006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	3945.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	7.16773197443079	7.70127494820599	7.64926056143126	7.28689323155069	7.27131701515485	7.38105335960581	7.38569130223028	6.89056657779226	-0.296558975942419	0.174641246042502	0.469069910997419
Merged-chr5-113783863-4	chr5	113783761	113783961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11049.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	6.30831539718955	6.8577446498054	6.58382195871636	6.21250760547316	6.38074971585862	6.66362097457708	6.38658266451363	6.28562596487664	-0.109679442957233	0.661015334709042	0.859233242450522
Merged-chr11-17002634-4	chr11	17002545	17002745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	6073.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	7.0524856740682	7.04235779223831	7.37322686966911	7.47537053096111	7.1904130146314	7.24350253213632	7.43885555975988	7.02341820961009	-0.0383147927439167	0.854056406059511	0.945008271417317
Merged-chr4-89351282-4	chr4	89351156	89351356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-40224.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	5.78808510307945	6.71907860033695	6.36261952527982	5.59139898366241	6.21353069009914	6.41691736073708	5.59521115808594	5.36114392155268	-0.357003744430786	0.515751952728475	0.777736287514515
Merged-chr17-80112825-5	chr17	80112813	80113013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14558.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	6.09903770986659	5.74767334227664	6.56366694361937	6.99322993005997	5.85863325131539	5.43974472733006	6.18675356169294	5.8693135035649	-0.892098826394845	0.00895263664247453	0.0729142926218947
Merged-chr11-49085037-4	chr11	49084932	49085132	+	923.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271677, intron 1 of 2)	intron (NM_001271677, intron 1 of 2)	-1985.0	NM_001271676	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	4.36208954536741	4.28877626084538	4.36277431471133	4.34937200862917	4.09878309170485	4.15372704829608	4.34296865184013	4.47984905084722	-0.167326212977695	0.667077327972374	0.86221345902729
Merged-chr7-101382450-4	chr7	101382359	101382559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	-3067.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	8.41489142658197	8.61230585845559	8.34072133868672	8.10813493370177	8.53014481371819	8.84481386019837	8.55677938445578	8.43667057564558	0.280931053633972	0.120722447745383	0.384680506725841
Merged-chr1-134078402-3	chr1	134078314	134078514	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007570, intron 1 of 1)	intron (NM_007570, intron 1 of 1)	741.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	5.37020408212922	5.55926929591214	5.40049758778316	4.8357929075374	5.32631284109169	5.48623152733809	5.585064683457	5.65772171158866	0.378453446839652	0.235883938829394	0.545896142740888
Merged-chr5-122398026-4	chr5	122397943	122398143	+	992.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 2 of 6)	intron (NM_019824, intron 2 of 6)	6165.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	5.16426256999057	4.98214211949585	4.82538283676932	5.10139945068541	5.42122632175466	4.88127746621908	4.84073470937201	4.61178795762555	-0.0651499596061785	0.857361758058607	0.946273938640331
Merged-chr2-94002517-2	chr2	94002417	94002617	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026944, intron 6 of 9)	intron (NM_026944, intron 6 of 9)	8213.0	NM_026944	69113.0	Mm.272498	NM_026944	ENSMUSG00000040174	Alkbh3	1700108H04Rik|1810020C19Rik|Abh3|mABH3	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase	protein-coding	2.9383234278409	2.79489841396167	2.93865695889288	3.07519681907166	2.90755818852406	3.10943889747717	3.04876887873435	3.26936412436414	0.573148394249568	0.338485927765035	0.648052521556422
Merged-chr5-43102203-4	chr5	43102100	43102300	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131263.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	5.32543994486757	5.14115425600142	5.9371332424068	6.09788477787611	5.70246006325542	5.65670260978047	5.80204434493787	4.9907041931396	-0.203484228321418	0.578325737232043	0.814656447271811
Merged-chr9-88523034-4	chr9	88522918	88523118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040721)	promoter-TSS (NR_040721)	-121.0	NR_040721	72655.0	Mm.21798	NR_040721	ENSMUSG00000097195	Snhg5	2810026P18Rik|4933428I09Rik|mU50HG-b	small nucleolar RNA host gene 5	ncRNA	8.63406373945367	8.5869453454364	8.48053968106249	8.48539903234182	8.62353775678664	8.6330937629649	8.35352523901265	8.34898885729143	-0.0593119270320847	0.708260983732466	0.882740475592597
Merged-chr5-121260212-1	chr5	121260112	121260312	+	695.666687	f0_balb.idr	intron (NM_181421, intron 4 of 75)	intron (NM_181421, intron 4 of 75)	39993.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	3.82544239445317	3.84703399202633	3.82605095980565	3.49624063405474	3.31562823482537	3.46299474780493	3.33637026999056	3.34618546252074	-1.30337391504499	0.0129335037421896	0.0946918188505772
Merged-chr8-10834312-3	chr8	10834214	10834414	+	601.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTG)n|Simple_repeat|Simple_repeat	48140.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	3.74669215316941	3.63294608608423	3.31886528207433	3.60994118393412	3.32507962552266	3.61223726905087	3.36883218618054	3.49471148019743	-0.460931090327185	0.368379974366728	0.67281911392627
Merged-chr14-7851943-4	chr14	7851837	7852037	+	771.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081427, intron 1 of 45)	intron (NM_001081427, intron 1 of 45)	33980.0	NM_134080	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	4.07926115160116	3.70671467406994	4.07989403128124	4.06403054146562	3.7661334703552	3.62530306827603	3.88432273338474	3.74484185602169	-0.678950507192699	0.139405521264933	0.415146612711589
Merged-chr12-113140271-4	chr12	113140143	113140343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347443)	promoter-TSS (NM_001347443)	7.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	6.6360295053042	6.64462968356366	6.99498738874837	6.63705503382125	6.43658006639608	6.46380320659755	6.5245352934034	6.64770891013326	-0.306703798332353	0.154212257632253	0.439434975800693
Merged-chr6-145632427-2	chr6	145632327	145632527	+	677.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16464.0	NM_009449	22147.0	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	2.73669729493289	2.69861322943641	2.79556481627774	2.75091068143149	2.75874295519638	2.57148775992898	2.53631519213892	2.6097143199781	-0.593865980127142	0.3694747234735	0.673692529630015
Merged-chr2-154294934-2	chr2	154294834	154295034	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-12310.0	NM_001025574	433492.0	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838	BPI fold containing family B, member 9B	protein-coding	4.37561556498685	3.89256986271359	3.77661657901896	3.18292600864811	4.18953548645856	3.78520838793895	3.52605889887786	3.97596743796757	0.0339664610824615	0.953086250789853	0.983320469096829
Merged-chr9-78358277-2	chr9	78358121	78358321	+	608.666626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	9978.0	NM_025274	434423.0	Mm.139314	NM_025274	ENSMUSG00000060461	Dppa5a	AA536857|Dppa5|Esg1|ecat2	developmental pluripotency associated 5A	protein-coding	2.95000406783024	2.9062422802933	2.68244238911324	3.1306665813613	2.89506356725377	3.058061984321	2.93996116763559	3.00798397173216	0.151946035327441	0.807452027142192	0.925754680668687
Merged-chr2-51013246-4	chr2	51013125	51013325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103541.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	5.32749431588189	5.77105542824479	5.78213105809269	6.18335400896118	5.49643779230568	5.75196134779495	6.00897000675663	5.57130540399887	-0.169414834743018	0.585357208758761	0.818102471327532
Merged-chr11-114229965-4	chr11	114229882	114230082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_A_Mam|LINE|RTE-X	31724.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	5.8075154169347	5.6469020392025	6.10131388658199	5.47611746308796	6.60214958145917	5.54458125401297	6.25532180448321	6.47541633283447	0.809242718901515	0.00953444328835491	0.0762777825126259
Merged-chr4-137883914-4	chr4	137883788	137883988	+	933.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	21651.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	4.2208116196187	4.37168260129351	4.53044628722278	4.46873460667202	4.67581798337482	4.24366925785799	4.50941156640453	4.56606600304553	0.24990200598617	0.50763875701303	0.772936148828409
Merged-chr5-140116664-2	chr5	140116564	140116764	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359025, intron 14 of 17)	B4A|SINE|B4	58254.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	3.59461298807566	3.51532371336356	3.48069694322615	3.8752940656844	3.80466178703017	3.71109553848853	3.52609381852387	3.69805261221275	0.15081367368637	0.760875852206065	0.906431126096988
Merged-chr11-97315713-4	chr11	97315595	97315795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025927)	promoter-TSS (NM_025927)	-21.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	6.94100047070802	7.29328239822407	6.50674890440706	6.40501779573163	6.85435782582493	7.08024085744689	6.40002880337088	7.25974064456761	0.142903241615187	0.617865403392562	0.835738014709902
Merged-chr6-66357240-3	chr6	66357146	66357346	+	835.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84741.0	NR_136927	102633773.0	Mm.272086	NR_136927	ENSMUSG00000107653	Gm31520	-	sterol-C5-desaturase pseudogene	pseudo	3.27845090652794	3.55685810712163	3.34742626146772	3.71701459472924	3.62591355513165	3.65253347254311	3.91528042394496	4.0907579604341	1.00171028924291	0.0586735442319931	0.254949283004031
Merged-chr10-30777916-4	chr10	30777831	30778031	+	912.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	25395.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	4.70091322298404	5.19799910095699	5.08712984637649	4.76965008695622	4.24905333055765	4.58710488732812	4.13216436658398	4.14659442671769	-1.48575420089857	0.000181536931936671	0.00335514248293561
Merged-chr4-139249456-4	chr4	139249357	139249557	+	761.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	55346.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	3.84937328311257	3.65717753663045	3.79808535170155	4.08530976139704	3.70609298080018	3.62009668354222	4.02033357471817	4.19965262860414	0.104473508494109	0.829235906432081	0.934397133080848
Merged-chr17-28192853-3	chr17	28192744	28192944	+	947.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357995, intron 2 of 13)	intron (NM_001357995, intron 2 of 13)	-14934.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	3.0538697351178	3.02214827499398	2.98310742015867	2.83560873546008	3.54749381951657	3.48036210524856	3.59529604194564	3.51623272912177	2.18901921953922	4.62794912050181e-05	0.00105784454222286
Merged-chr7-110727253-2	chr7	110727153	110727353	+	724.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40953.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	3.33765996044357	3.20788956218819	3.17321495220361	2.91528509794942	2.97447918932999	3.54867932945	3.10207508559084	2.9837702018214	0.0429097096052455	0.943748670440435	0.979777019034972
Merged-chr7-24904267-4	chr7	24904172	24904372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130152)	promoter-TSS (NM_001130152)	-74.0	NM_001130152	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	8.39213837797836	8.67709341521332	8.73103414711171	8.69458208807516	8.24786859042811	8.41049977921212	8.75913304197116	8.47130670998629	-0.188298042429962	0.286805864477625	0.598454467247327
Merged-chr8-95534133-3	chr8	95534028	95534228	+	633.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172914)	promoter-TSS (NM_172914)	28.0	NM_172914	244608.0	Mm.248902	NM_172914	ENSMUSG00000036598	Ccdc113	4933409I22|BC060957	coiled-coil domain containing 113	protein-coding	3.13201778147746	2.97602203953371	3.13241677330094	3.2632142236043	3.10699542866428	2.91407463747527	3.06311900008235	3.23991899688785	-0.196816740926358	0.733937130634381	0.894699362632536
Merged-chr11-77802282-1	chr11	77802182	77802382	+	558.333313	f0_balb.idr	intron (NM_001291214, intron 1 of 38)	intron (NM_001291214, intron 1 of 38)	984.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	3.27140400767052	3.1501412767362	3.27186343237242	3.19749917925867	3.16424342037326	3.01382501503363	3.14954378237442	2.90581658656781	-0.613133669172943	0.283215804408509	0.59534411429271
Merged-chr2-14631769-4	chr2	14631633	14631833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023116, intron 2 of 13)	intron (NM_023116, intron 2 of 13)	27427.0	NM_023116	12296.0	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	6.71022072251912	7.1361288259799	6.80161679002835	6.98217923360684	6.98506020328732	7.04895830573506	7.06192518965074	6.97249519775542	0.12428466565746	0.532990682654251	0.788398805429988
Merged-chr11-32541486-4	chr11	32541378	32541578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	MLT1A0|LTR|ERVL-MaLR	8212.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	5.692774818175	5.40382439092443	5.41068240543117	5.34396182073931	5.39217856382864	5.26275359261203	5.54474156784291	5.34791682628616	-0.117079053440565	0.679741008539145	0.86857902618052
Merged-chr10-80215311-4	chr10	80215195	80215395	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-11303.0	NM_023431	68114.0	Mm.273418	NM_023431	ENSMUSG00000020156	Mum1	2610019J09|9430059D04Rik|UBE-1C2	melanoma associated antigen (mutated) 1	protein-coding	5.36438697207434	5.68261306921704	5.5325765055956	4.84581482936053	5.14825970626289	5.67987987057815	5.21433236748479	5.65272367038105	0.103069368245666	0.766425540265624	0.908638755872086
Merged-chr6-115808631-4	chr6	115808529	115808729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028546)	promoter-TSS (NR_028546)	114.0	NM_172086	19951.0	Mm.104368	NM_172086	ENSMUSG00000057841	Rpl32	AU020185|rpL32-3A	ribosomal protein L32	protein-coding	6.28958134088633	6.24744750892294	6.68722164068627	6.03203244715331	6.33907334564553	6.46645220400498	6.07921741753587	6.2289596701635	-0.0522432462905309	0.837058428293494	0.938145671742126
Merged-chr4-137724327-4	chr4	137724203	137724403	+	973.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_138592)	promoter-TSS (NR_138592)	-158.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	5.5188047630247	4.67509076100058	4.77601013459642	5.04452514859591	5.20715706424332	4.78488016453532	4.53641324482846	5.15444036407515	-0.169664738881287	0.665047215380429	0.861212308400894
Merged-chr2-30603982-2	chr2	30603882	30604082	+	966.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_030137, intron 1 of 1)	intron (NM_030137, intron 1 of 1)	8938.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	3.05613842481618	2.84191590971979	2.93265824528158	2.90726871976773	2.86405663330989	3.28261489716382	3.15639195069131	2.99455274462413	0.598950153473825	0.310284295087683	0.622452228532409
Merged-chr5-130283217-4	chr5	130283109	130283309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153350, exon 9 of 16)	non-coding (NR_153350, exon 9 of 16)	26172.0	NM_001015876	100929.0	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	4.99320934298666	5.05837931080062	5.54951057627515	5.69041286593068	5.10346073656307	5.13508526619862	5.56993643019564	5.44155757479236	-0.0885139253790988	0.795116838784457	0.920762027490351
Merged-chr1-95323201-4	chr1	95323093	95323293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026321, intron 1 of 2)	intron (NM_026321, intron 1 of 2)	9565.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	7.36803216755115	7.34433807760074	7.15113531161207	7.75686094444972	7.35928212595905	7.37527768082212	7.35246705351668	7.192875541449	-0.158255959582797	0.441471263514583	0.72851318019698
Merged-chr3-5576307-4	chr3	5576203	5576403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163301)	promoter-TSS (NM_001163301)	-55.0	NM_008994	19302.0	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	9.22281326939591	9.24149616467987	9.41254601946214	9.57922414008829	9.56982516564387	9.48684692300683	9.64365247065254	9.27664267769779	0.154963404441705	0.334922817412409	0.64529103101308
Merged-chr5-96909449-4	chr5	96909364	96909564	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-11808.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	5.08415082741085	5.12846790653401	4.97059000667991	5.18361373410435	5.61167989005968	5.36747488923506	5.61093286612006	5.87138085399875	0.927079785514756	0.00144115679022221	0.0180535197415042
Merged-chr18-80001427-2	chr18	80001341	80001541	+	716.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45454.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	3.09508595096077	3.0861216032452	3.03524411094896	2.92720158771715	2.86308308055851	3.26537002085183	3.19485634029416	2.97070651872767	0.186712898613273	0.749500006484535	0.901354058272243
Merged-chr4-148657867-4	chr4	148657744	148657944	+	790.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085505, intron 3 of 10)	intron (NM_001085505, intron 3 of 10)	14527.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	3.81022122690918	3.61786401573541	3.5110167739409	3.72156880394845	3.93331889912637	4.03785614635745	4.0365677928593	4.43280594297194	1.23576506085832	0.00701794075843949	0.0609777838433794
Merged-chr4-41310769-4	chr4	41310681	41310881	+	921.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026893, intron 2 of 8)	RSINE1|SINE|B4	4120.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	4.31881105758046	4.49253302832573	4.07205610248021	4.08311386293509	4.63848213426442	4.53636505534789	4.46726071891381	4.40382630326422	0.642407450347858	0.095556223569073	0.338453622470034
Merged-chr6-129238432-4	chr6	129238345	129238545	+	842.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040265)	promoter-TSS (NR_040265)	37.0	NR_040266	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	4.02761567170232	4.11791859286551	4.17209765555007	3.8485559033005	4.43510480816681	4.3871585562475	3.90710569835743	4.21404109975363	0.564600982287446	0.182678254696011	0.479279597899276
Merged-chr9-13584694-3	chr9	13584574	13584774	+	940.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35315.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	3.96604496929327	4.3149872621669	3.81603186006395	4.32020067342001	3.52594113791315	3.93747896326917	3.57152206353625	3.70306881941746	-1.29075863857059	0.0079413761074396	0.066874211663563
Merged-chr4-135890068-4	chr4	135889958	135890158	+	941.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5131.0	NM_009924	12802.0	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	3.77583763104688	4.06574449105728	3.93688129321462	3.97616026377265	4.23605068673936	3.9523678278193	4.14772109392521	3.88334568496041	0.331217615103477	0.441543458063645	0.728526235547338
Merged-chr9-90274698-4	chr9	90274583	90274783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3914.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	7.95826271334588	8.34942871837724	8.29712963032111	8.25072867320949	8.34221453926915	8.33933360819923	8.41988249832638	8.28048304110454	0.15391867967425	0.342893237727311	0.6516462545027
Merged-chr11-106957572-4	chr11	106957462	106957662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36847.0	NM_025481	66313.0	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	6.85722950714587	6.94611542879169	6.88483366321001	6.72120420114212	6.77557147595356	7.00753343768064	6.55824457954202	6.50194796689005	-0.173946370398851	0.418428573504476	0.711931976817109
Merged-chr4-40703156-4	chr4	40703052	40703252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025545)	promoter-TSS (NM_025545)	42.0	NM_001025444	66408.0	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	7.35838700842217	7.50696986604853	7.31921846402038	7.07814425789096	7.27274224683676	7.37791383132219	6.95714668607089	7.44095142972084	-0.0575682973642965	0.779167282305821	0.913841690258744
Merged-chr10-35348930-3	chr10	35348824	35349024	+	947.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	865524.0	NM_010237	14302.0	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	3.57692724156849	3.64132424657626	3.92626403715739	4.01142112584478	3.69051448420752	3.50735350321456	3.77231088896659	3.51708974545284	-0.555062225396769	0.261016252788178	0.572926972283513
Merged-chr13-47190158-4	chr13	47190074	47190274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 1 of 7)	intron (NM_146042, intron 1 of 7)	-3829.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	6.49124737526993	6.81197572854843	7.12496275995427	7.23310405587258	6.35944757948445	6.37859028627965	6.51031848283098	6.55582270116003	-0.726576739063182	0.00255725779812488	0.0282075085716304
Merged-chr3-51276221-4	chr3	51276129	51276329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073429)	promoter-TSS (NR_073429)	-532.0	NR_073429	67746.0	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	8.92072522397109	9.1011496579245	9.2708152049555	9.32089177492337	8.92270571382064	9.10346286401787	9.06527851329721	8.93907098189995	-0.196396904178836	0.211032726761306	0.515716175112166
Merged-chr10-10660172-4	chr10	10660074	10660274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54229.0	NR_033630	382450.0	Mm.422788	NR_033630	ENSMUSG00000098065	Gm5177	EG382450	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	5.69307822833093	5.76919445703857	5.58456362941479	6.07718513751178	5.792400613458	5.64404803481098	6.18998554392851	5.86141208991048	0.117339861247894	0.675302873788219	0.86665674870403
Merged-chr8-35633533-2	chr8	35633430	35633630	+	894.5	f0_balb.idr|f1_balb.idr	intron (NM_001081279, intron 1 of 2)	B4A|SINE|B4	-44510.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	3.65413289754474	3.87696107631237	3.53473881240981	3.90626038516327	3.78770197693246	3.93610447986076	4.02846928145588	3.81396885181902	0.361738863466705	0.43569832964621	0.724787271556548
Merged-chr10-61648598-4	chr10	61648512	61648712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026438)	promoter-TSS (NM_026438)	-9.0	NM_026438	67895.0	Mm.28897	NM_026438	ENSMUSG00000020089	Ppa1	2010317E03Rik|Pyp	pyrophosphatase (inorganic) 1	protein-coding	7.30039496488466	7.27476279640899	7.26995295134364	7.32305608635856	7.32631954710493	7.43595373720576	7.27562173686187	7.19906241377854	0.0233371847795003	0.894330831681936	0.960492097716949
Merged-chr9-95170295-4	chr9	95170201	95170401	+	954.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 14 of 15)	intron (NM_177909, intron 14 of 15)	236969.0	NM_018763	54371.0	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	5.46228203902957	6.17528797689859	5.71155416101649	5.54211644349276	4.84267142511623	5.06897391956226	5.02075406535139	5.00339863953308	-1.39566735375096	1.65602621119764e-05	0.00043256620068564
Merged-chr7-101450090-4	chr7	101450010	101450210	+	839.645874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243758)	promoter-TSS (NM_001243758)	-410.0	NM_001243758	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	4.50051764391911	4.91748146070737	4.26453907696525	4.55207109849414	4.72807768173036	4.90833428541399	4.39219231441617	4.62201602278736	0.198710049747803	0.605391953534514	0.828850276728959
Merged-chr11-17007332-14	chr11	17007243	17007443	+	897.535706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	1375.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	4.08290734571987	4.14853055079558	4.0835174552314	3.83791207260532	4.13640420471084	4.00311825057384	3.91968374268807	4.36906177671724	0.235033932491847	0.583119037556057	0.816904287158464
Merged-chr8-115311132-4	chr8	115311020	115311220	+	847.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	395774.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	4.56371391623758	4.07125101263553	4.24527425848665	4.02985452091515	4.3071638863183	4.54480183395764	4.08428055682817	4.19652661242174	0.149598539904722	0.721748935114545	0.888889479237274
Merged-chr2-32360968-4	chr2	32360881	32361081	+	897.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-2029.0	NM_001252538	68379.0	Mm.170508	NM_028412	ENSMUSG00000039205	Ciz1	0610038H21Rik|2900056O04Rik|LSFR1|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding	4.76992190620713	4.35765838006477	4.24299183257406	4.71133024424236	4.36584825508791	4.2660782337894	4.32063473124144	4.86304462060952	-0.158523390203312	0.699435924932991	0.878778758411201
Merged-chr11-83604828-4	chr11	83604720	83604920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 2 of 8)	intron (NR_036453, intron 2 of 8)	-11733.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	6.64528546999565	6.9819161482142	6.78017874617274	6.69519341468138	6.76050576503041	6.77544676897856	6.85321278038901	6.5097382712785	-0.0680484974549893	0.74564628846944	0.89965485286124
Merged-chr2-79619213-4	chr2	79619116	79619316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16209.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	6.47033734504442	6.47384566571602	6.47148720583973	6.60849114706054	5.45367348352058	6.0428840640312	6.08954129497454	6.52958573716967	-0.65814238470439	0.0208325942087584	0.131562702793471
Merged-chr13-73822358-4	chr13	73822279	73822479	+	857.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347535, intron 8 of 8)	intron (NM_001347535, intron 8 of 8)	25252.0	NM_028186	72293.0	Mm.45506	NM_028186	ENSMUSG00000021567	Nkd2	2210403L10Rik|AW212591|mNkd2	naked cuticle 2	protein-coding	4.04750667395461	4.42516706736819	4.1905067039108	4.13809253739589	3.91536945431871	4.36040645206582	4.17206250279818	4.09480771929498	-0.182518090287957	0.66316261991964	0.860431136041926
Merged-chr13-54295915-4	chr13	54295867	54296067	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75382.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	3.98514522199264	3.88108274711633	3.81650913061283	4.08586907662943	4.42781572669012	3.99880251057367	4.61336498687354	4.42702665579291	1.07164146112726	0.0123384849009907	0.0916057072728877
Merged-chr4-116655291-4	chr4	116655194	116655394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3620.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	6.52556020834948	6.47114633094868	6.68030212235715	6.4435385507873	6.35113093509787	6.71827627065663	6.42658383882947	6.60123590841941	-0.00370710155537698	0.986431141437071	0.995010290574724
Merged-chr5-142895291-4	chr5	142895174	142895374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033312)	promoter-TSS (NM_001033312)	-36.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	6.62023886751124	6.6529336067538	5.90431494090454	6.31000269018066	6.42884808108447	6.35414891643741	6.14573970872914	6.04379579054455	-0.220037929712807	0.404540966677264	0.701628203389886
Merged-chr12-71055692-4	chr12	71055591	71055791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081195, intron 11 of 23)	intron (NM_001081195, intron 11 of 23)	39724.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	6.45320811271981	6.33451556756677	6.26143137315366	6.52746345917562	6.13598355564286	6.54533138339834	6.06867598634424	5.80699063228243	-0.365514658156197	0.146864018767932	0.427534006457103
Merged-chr7-16250937-4	chr7	16250845	16251045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	URR1B|DNA|hAT-Charlie	-6791.0	NM_176912	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	5.94944668252581	5.99703807015513	5.99188569395042	6.06422045762968	5.47824006103473	5.58623547456679	5.58660998655414	5.46593227764746	-0.792963692784135	0.00157012419909423	0.0193892904870452
Merged-chr10-117148529-4	chr10	117148410	117148610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177798)	promoter-TSS (NM_177798)	-36.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	7.25632867811913	7.04905671261318	7.39924754742552	7.22898242332491	7.3724409111544	7.1474832770492	7.32378019816232	7.26317921534859	0.0651584719874945	0.725802542006657	0.890921883682774
Merged-chr4-129808537-2	chr4	129808452	129808652	+	664.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-11927.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	2.63781594630531	2.68989857710645	2.48116463938308	2.39198746495122	3.29785964420058	3.08012118310511	2.89560979409994	3.02185017186289	2.65442987889881	7.35988463790071e-05	0.00156642349401053
Merged-chr5-113899349-4	chr5	113899263	113899463	+	880.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 1 of 10)	intron (NM_011779, intron 1 of 10)	9343.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	4.84633481143855	4.56903676686345	4.87913940001135	4.91679591513861	4.46083598443477	4.55139107054389	4.3110604436749	4.46433284570764	-0.814678505371376	0.0236421922710386	0.142915295427622
Merged-chr6-37617560-4	chr6	37617447	37617647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87374.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	6.76293497010085	6.31784471571418	6.39296952980381	6.98876854309821	6.73988215105919	6.77659402918645	6.55052093909811	6.70217790682106	0.0477748156999117	0.843989585088722	0.94088019607581
Merged-chr5-3502279-2	chr5	3502179	3502379	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-41554.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	4.592553998918	5.16260786737715	4.63589037000205	4.4606648356505	4.94394258066882	5.10510459615216	4.48366545335034	4.82690725762608	0.250297593176495	0.516179654807937	0.778006346996534
Merged-chr12-111425479-4	chr12	111425389	111425589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 6 of 13)	intron (NM_001289487, intron 6 of 13)	8044.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	5.45798147666506	5.77165209939276	5.91807714675361	5.6107239199205	5.76052403884703	5.98022724216398	5.75335350776978	5.65367707833271	0.155332146195516	0.558129635321749	0.803005868101121
Merged-chr5-143488187-4	chr5	143488073	143488273	+	908.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 8 of 14)	intron (NM_144915, intron 8 of 14)	23680.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	4.66592880058449	4.13159060444164	4.43709271160585	4.37101865051182	4.44277182882553	4.47915797809	4.41689571914323	4.47549740775723	0.104247654304662	0.783264328891627	0.915557717774775
Merged-chr7-49252622-3	chr7	49252531	49252731	+	789.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	6442.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	3.6557531584765	3.41972835642699	3.13486898463471	3.50098494412083	3.17253332790678	3.67476875215338	3.37955052293175	3.65404660959133	0.130025115837627	0.814330382971077	0.928327532350968
Merged-chr16-31944199-4	chr16	31944102	31944302	+	914.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172822, intron 2 of 2)	intron (NM_172822, intron 2 of 2)	4319.0	NR_027897	106264.0	Mm.347369	NM_025320	ENSMUSG00000107002	0610012G03Rik	AI839730	RIKEN cDNA 0610012G03 gene	ncRNA	4.65901884373602	4.99042979224155	4.85598568323783	4.85935912352727	5.18194295018306	5.06389814222865	4.63904882099462	4.88881205397696	0.238518381358956	0.482413216863768	0.75723418393445
Merged-chr15-64039032-3	chr15	64038941	64039141	+	678.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	20723.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.20743258022955	3.52079190385683	3.2077923256579	3.40095064047335	3.45910493034222	3.43914553431791	3.31513421066869	3.32562784344498	0.1435268597144	0.784753452647531	0.916241189783762
Merged-chr14-87452248-3	chr14	87452147	87452347	+	880.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253755, intron 1 of 11)	intron (NM_001253755, intron 1 of 11)	35664.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	3.89738634842124	3.76955267394793	3.61389637945399	3.98476215194887	3.70148873989477	3.28994428543737	3.23980058175386	3.31589391195647	-1.34222919116581	0.0155768881944737	0.107737142898115
Merged-chr6-39680810-4	chr6	39680702	39680902	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139294, intron 2 of 21)	Lx7|LINE|L1	44661.0	NM_139294	109880.0	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	4.85969198975989	5.06613462406902	5.07412040788633	5.0918176817667	5.38219641982075	4.8748524672243	4.91225570880439	5.10298898302788	0.130624155831977	0.688023564871726	0.872602637190276
Merged-chr2-128762746-3	chr2	128762670	128762870	+	803.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	MTD|LTR|ERVL-MaLR	-55533.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	2.92262017080361	3.44972943866476	3.41410229574146	3.28694461807402	3.15177512694509	3.23962141383953	3.34829573616335	3.24901616609747	-0.14211598423991	0.802601577482272	0.923936032101707
Merged-chr3-88502838-3	chr3	88502740	88502940	+	944.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001111102, exon 1 of 10)	exon (NM_001111102, exon 1 of 10)	512.0	NM_001111102	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	4.29608674642193	4.07334235115432	4.41542458167703	3.68602350306556	3.8844186514218	4.29343779669111	4.00325553414204	4.37417338510699	0.0373553315799001	0.936358880609154	0.97693414934542
Merged-chr19-41829847-4	chr19	41829709	41829909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008043)	promoter-TSS (NM_008043)	-161.0	NM_008043	14296.0	Mm.4573	NM_008043	ENSMUSG00000067199	Frat1	AW060382	frequently rearranged in advanced T cell lymphomas	protein-coding	6.01993909624211	5.73475505275274	6.2877668149784	5.70466091069008	6.52925378845799	6.72813366784255	6.32691696824359	6.54884225115673	0.908464601769247	0.000305320548688869	0.00514742096994908
Merged-chr2-34771959-4	chr2	34771925	34772125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022310)	promoter-TSS (NM_022310)	-65.0	NM_001163434	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	8.73321777218644	9.21945717384357	8.68655633198391	8.36080877219143	8.94322317619816	9.26522407288324	8.92110293886953	8.6854802594116	0.22892279950451	0.288753574716916	0.600742135877454
Merged-chr18-53921624-4	chr18	53921615	53921815	+	952.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 6 of 12)	intron (NM_152809, intron 6 of 12)	59602.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	4.17504474918274	4.38650882319861	4.37020073019529	4.62173506289497	4.63524004201774	4.45120601788682	4.92192902501881	4.72587800357391	0.620690544923675	0.106466556477218	0.359730861309263
Merged-chr12-38780287-4	chr12	38780180	38780380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007960, exon 1 of 13)	5' UTR (NM_007960, exon 1 of 13)	198.0	NM_007960	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	6.87851227950344	7.1231651377731	6.80842895575546	6.99982687957109	7.31264122544201	7.34007915915967	6.98817863409633	6.83258160958553	0.244357649349269	0.249573569300546	0.560638676047578
Merged-chr2-13170154-3	chr2	13170041	13170241	+	919.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009105, intron 7 of 8)	intron (NM_009105, intron 7 of 8)	101274.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	3.86205211836833	3.8691716852154	3.74280578452566	4.42058797110178	4.07765072778497	4.24797534591776	4.39424635425351	4.44920556482349	0.675506560674997	0.156283173202717	0.442147804176419
Merged-chr6-106794252-4	chr6	106794144	106794344	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175357, exon 4 of 11)	exon (NM_175357, exon 4 of 11)	5843.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	4.93429712087571	4.68260196622594	4.78338005611435	5.17336400646941	5.1845946126655	4.74688357530103	5.47322013835797	4.81984481630906	0.335244870273801	0.358106980930022	0.664158134988955
Merged-chr1-173961649-4	chr1	173961598	173961798	+	987.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011940)	TTS (NM_011940)	-19026.0	NM_001302650	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	7.79412065720759	7.33518870721961	7.20250583694516	7.71157746567542	5.3957004524872	5.47898902093423	5.86256291570553	5.64924756367521	-2.87225353616155	7.83015427097322e-29	8.57450078236312e-26
Merged-chr4-133759606-2	chr4	133759518	133759718	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6007.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	3.02630166473086	3.24776739775034	3.14245603021706	2.97643945067713	2.93187925472829	2.86455168709207	3.01602271470675	3.14073742222617	-0.450860209873694	0.445061553983991	0.731198136541277
Merged-chr7-143154090-4	chr7	143153986	143154186	+	909.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008434, intron 2 of 15)	intron (NM_008434, intron 2 of 15)	46832.0	NM_008434	16535.0	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	4.33383224682446	4.38812234239704	4.69806299911692	4.47983967508493	4.07696227396317	4.59859764376025	4.70960004453106	4.54612748529128	0.0308837688668917	0.938058951945063	0.977479276803853
Merged-chr7-139683905-3	chr7	139683822	139684022	+	847.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302546)	promoter-TSS (NM_001302546)	-107.0	NM_001302546	212124.0	Mm.425507	NM_177212	ENSMUSG00000049571	Cfap46	9330101J02Rik|E030019B06Rik|Gm170|Ttc40	cilia and flagella associated protein 46	protein-coding	3.76465290544081	3.90849678387617	3.7172122092189	3.76136130040745	3.449386897169	3.29188403223641	3.43349792779898	3.50293143921856	-1.20724694433323	0.0160119861278208	0.109746476706033
Merged-chr13-94050245-4	chr13	94050131	94050331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7565.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	4.87110358585794	4.71076801641535	4.73126830992789	5.14992144901629	4.56346075287626	4.06747393037288	4.97334909286844	4.23742912400455	-0.796203261640163	0.0599349283077435	0.258301541657597
Merged-chr6-34041025-4	chr6	34040939	34041139	+	846.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028886, intron 3 of 19)	MER5A|DNA|hAT-Charlie	11591.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	3.83892219381255	3.79384832313053	3.53122453664139	4.09241279732019	4.16576291636059	4.16760104991127	4.19961793308457	4.29587701690598	0.938790334027877	0.0416641384730469	0.206691644296975
Merged-chr2-50842087-4	chr2	50841960	50842160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67624.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	8.05567090197381	8.0402909710467	8.03712384682538	8.32788384686113	8.06784013454611	7.96423979734037	8.16092479692485	8.13424227176503	-0.0591643181185977	0.722546478755151	0.889239126977372
Merged-chr18-6055826-4	chr18	6055730	6055930	+	933.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029277, intron 7 of 17)	intron (NM_029277, intron 7 of 17)	80268.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	4.57848548755229	4.46228930842732	3.97450898431002	3.93819679314735	4.35099236548501	4.04255459958502	3.95862139578911	4.46878415869729	-0.0886077680617397	0.846270608043228	0.941927981530162
Merged-chr1-43467128-4	chr1	43467024	43467224	+	843.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	21373.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	4.25238173280541	4.51682580099088	4.43255432498308	4.55859700265166	4.70999529474741	4.56214373916244	4.02926215080116	4.2976732414688	-0.0382375859749267	0.925368047090647	0.97247070180594
Merged-chr3-20538712-4	chr3	20538588	20538788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-171511.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	7.19187322511036	7.25944363552306	7.64693528561172	7.67834491951596	7.34034722647789	7.0038449625225	7.29662834451796	7.00439486445178	-0.394566104176992	0.0642813690569591	0.269435038569791
Merged-chr16-70330855-4	chr16	70330756	70330956	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 1 of 15)	intron (NM_028803, intron 1 of 15)	16907.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	4.9274925272447	4.86290540768766	5.24048716399014	5.29372850694252	6.05850417471623	6.19698388941234	6.04769992068251	5.74754964635963	1.5309993683121	2.5547561942317e-07	1.00482572681122e-05
Merged-chr2-53191327-4	chr2	53191232	53191432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022989)	promoter-TSS (NM_022989)	-145.0	NM_018785	56194.0	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	8.70097308755226	8.95115312709911	8.85507768673388	8.83947476128503	8.85936243560364	8.90601285211053	9.08910550239693	8.69683975511493	0.0679632699820157	0.663924921838688	0.860780365686037
Merged-chr18-49979329-4	chr18	49979220	49979420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177760)	promoter-TSS (NM_001177760)	-107.0	NM_001177760	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	8.47807180906208	8.34796010139156	8.12173583691585	8.33060055887729	8.43791107689444	8.27982166198844	8.46414694731798	8.1670715337484	0.0245753405135883	0.881993475352239	0.955528863141706
Merged-chr11-60935477-4	chr11	60935378	60935578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008928, intron 1 of 11)	intron (NM_008928, intron 1 of 11)	3421.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	6.97459316962535	7.13033696879544	6.62509080532342	6.73993243344954	7.16649336652385	7.39462405015059	7.02643250145078	6.94512316390083	0.365473921888782	0.0922315052330485	0.332162566488162
Merged-chr18-30513333-4	chr18	30513215	30513415	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	240450.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	4.75933602365836	4.58038730475905	4.30373024810977	4.63672356533611	4.86268733577229	4.70449315742293	4.51076693128114	4.34992378643588	0.102802433996243	0.784816599874104	0.916243677318618
Merged-chr18-32432518-2	chr18	32432418	32432618	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 17 of 17)	intron (NM_001360876, intron 17 of 17)	-54234.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	3.11034286325969	3.07001283492663	3.1729686338811	3.27658471912694	3.19956264028915	3.2841386238923	3.52422360666081	3.23072658074952	0.537895939059731	0.325972764852313	0.63752464702773
Merged-chr12-71807500-4	chr12	71807418	71807618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD2|LINE|L1	-23550.0	NM_026102	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	5.06026321908929	4.95964173729274	5.06110635431898	5.53322080633936	5.13176997689867	5.12833009454659	5.61826080729648	5.31386075612321	0.208236715185501	0.536138880421944	0.790213033830861
Merged-chr19-10458307-4	chr19	10458199	10458399	+	868.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111140)	promoter-TSS (NM_001111140)	-852.0	NM_001111140	278795.0	Mm.490638	NM_001111140	ENSMUSG00000090291	Lrrc10b	Gm705|SerdinR	leucine rich repeat containing 10B	protein-coding	4.36303104254198	4.14216691642795	4.4036517574175	4.41912604267702	4.3593603946817	3.87359495889594	4.12511978801247	4.23313250495488	-0.415911887955361	0.315170616315001	0.627038475150038
Merged-chr8-46842802-4	chr8	46842690	46842890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 6 of 7)	intron (NR_152560, intron 6 of 7)	103045.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	6.71847539193896	6.72894355148094	6.74822253609177	6.88031608636607	6.4600287425983	6.38945612226585	6.69973977220196	6.56148614084786	-0.355234755744089	0.0862537494158342	0.320180215367388
Merged-chr11-77802767-4	chr11	77802668	77802868	+	982.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291214, intron 1 of 38)	intron (NM_001291214, intron 1 of 38)	1470.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	5.33763043831727	4.96215701361812	4.83260385741356	5.2132686700198	4.89401860414885	4.80237006134728	4.98921821364572	4.90480399713204	-0.40763278721019	0.212005629617313	0.516810463047731
Merged-chr6-24109336-1	chr6	24109236	24109436	+	615.0	f0_balb.idr	intron (NM_019481, intron 7 of 14)	intron (NM_019481, intron 7 of 14)	58756.0	NM_019481	55961.0	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	3.00872894573419	2.93110775560151	3.00919179214222	3.00426638058163	2.54882348106584	2.53372337774168	2.42554152786743	2.42957917436346	-2.95733913394693	0.000363528924599705	0.00593477645047761
Merged-chr6-100670600-4	chr6	100670497	100670697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181590, intron 1 of 10)	CpG	560.0	NM_181590	72171.0	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	5.36961685511619	5.56631553034988	5.53975389876765	5.51541247103235	5.26203201494425	5.48455759938847	5.53781497745091	5.45416043388372	-0.126707395707567	0.644436748537485	0.850224984568163
Merged-chr19-21942486-3	chr19	21942394	21942594	+	688.444458	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	164154.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	3.35993908670519	3.53950025240003	3.83040274749054	3.6098041511063	3.95032041978378	4.13841504017794	3.90808662604438	3.77776062370376	1.02859270083347	0.02925226698837	0.164492582711739
Merged-chr11-59534537-4	chr11	59534452	59534652	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-7017.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	4.59946000401376	4.09767394625351	4.22284995681937	4.05269271586206	4.37135746962056	4.53469437177482	4.54157954689196	4.56036563770903	0.60022054815818	0.127847784238338	0.397869772398595
Merged-chr15-25035303-4	chr15	25035201	25035401	+	831.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	378463.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	3.49505181621905	3.57500666898479	3.66373113526784	3.78880184107379	3.90819929291772	3.54841610826205	3.54086659231091	3.8559899813085	0.262653528237168	0.591579333874882	0.821668105564819
Merged-chr9-123260840-4	chr9	123260692	123260892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001002267)	promoter-TSS (NM_001002267)	-3.0	NM_001002267	72309.0	Mm.8569	NM_001002267	ENSMUSG00000054871	Tmem158	2310037P21Rik|Ris1	transmembrane protein 158	protein-coding	5.07802135758713	4.81425287642619	4.75979989125594	4.90677766547868	4.34818744858869	4.24524370479149	4.0398578104965	4.98793069142683	-0.944250845297766	0.0246437556387567	0.146972591756269
Merged-chr7-25269192-1	chr7	25269092	25269292	+	618.0	f0_balb.idr	intron (NM_001302811, intron 1 of 20)	intron (NM_001302811, intron 1 of 20)	1493.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	3.31391144291107	3.30778742098426	3.48540901692416	3.30325027694166	3.47769539779234	3.4279872728809	3.30253770765267	3.76846945725342	0.527398989615106	0.30499740627258	0.617499479135937
Merged-chr11-120988561-4	chr11	120988467	120988667	+	909.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027874, intron 1 of 9)	intron (NM_027874, intron 1 of 9)	2766.0	NM_139059	104318.0	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	4.87590791267574	4.42059544473903	4.34848645623348	4.62973787750865	4.50298436597985	4.97965371862637	4.55670526311924	5.05835815707042	0.433228664837647	0.259429699009445	0.571250530584125
Merged-chr5-53589322-5	chr5	53589164	53589364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080928, intron 1 of 10)	CpG	-1082.0	NM_009035	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	7.40054689514173	7.19794463285693	7.45576178474154	6.96861523995441	6.89987970658123	6.92396056299625	7.2184561685564	6.9696673472558	-0.344145862535244	0.102837162350454	0.35216269069915
Merged-chr2-124709496-4	chr2	124709340	124709540	+	735.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55859.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	2.98732078705825	2.90030195139486	3.54171484150063	2.90147552296858	3.11720826025292	3.29404615008474	3.22532252314126	3.34570946730654	0.537291902823456	0.37366595359341	0.677151812995197
Merged-chr10-111411750-4	chr10	111411656	111411856	+	939.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61471.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	4.81680415470084	4.46584350838256	4.70514278068672	4.78684851837551	4.83414024432611	4.42454000742108	4.89684639562983	5.10128742498766	0.279528907759089	0.438809933655167	0.726732530107543
Merged-chr7-141476384-4	chr7	141476288	141476488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252588)	promoter-TSS (NM_001252588)	8.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	6.44915671771927	6.39711971313485	6.46745026368976	6.42128003374294	6.54612059117925	6.67680374221506	6.59340006037871	6.44568923688841	0.196118293533507	0.342918965377303	0.6516462545027
Merged-chr14-16454833-4	chr14	16454743	16454943	+	944.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289760, intron 5 of 9)	GA-rich|Low_complexity|Low_complexity	89637.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	4.93869958866747	4.49625321618489	4.80999899255883	4.8363051538951	4.72985331848927	4.67789538318994	3.9628549437116	4.45552399599727	-0.614695371680016	0.134193311150936	0.407825042139404
Merged-chr2-131423167-6	chr2	131423076	131423276	+	920.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68686.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	3.57003958436133	4.07800828808686	3.92994959079594	3.25094125130812	3.53825627568357	3.91022888851139	3.49722340404884	3.83463510211704	-0.11698766102748	0.830394919482569	0.934980877782147
Merged-chr4-34882966-4	chr4	34882808	34883008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013889)	promoter-TSS (NM_013889)	40.0	NM_013889	30046.0	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	6.90894147691622	6.68933313217679	6.89752564946171	7.00395590600244	6.53611531872124	6.82182677878074	6.37396544967616	6.34466353686036	-0.506853504680672	0.0210187125436506	0.132406582852884
Merged-chr17-88066127-4	chr17	88066036	88066236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081034)	promoter-TSS (NM_001081034)	-845.0	NM_001081034	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	8.34965186672424	8.54762548094735	8.49291233768986	8.49156760646778	8.61755136494274	8.78478593410508	8.79139229904498	8.53632194473971	0.265990321313333	0.0816646108543318	0.31011552155359
Merged-chr14-25470840-1	chr14	25470740	25470940	+	719.0	f0_balb.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	11655.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	4.06005247310962	3.93524315054989	4.18987966708852	3.91766165283276	3.79527075628295	4.03893967746863	3.74077321138673	4.05816121488701	-0.308400362322626	0.482672486476868	0.757421686487144
Merged-chr11-21570226-3	chr11	21570132	21570332	+	624.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316675, intron 1 of 8)	intron (NM_001316675, intron 1 of 8)	1702.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	2.99094544974919	2.89900241156524	3.28028905661584	3.05079584320771	2.91849421883765	3.34087283844303	3.10294016266504	3.05293433349979	0.187540939454912	0.750112460408491	0.901576629816678
Merged-chr2-168955545-4	chr2	168955425	168955625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009564)	promoter-TSS (NM_009564)	62.0	NM_009564	22722.0	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	6.53077988861935	6.17521686426714	6.9682769952372	6.38115787653679	6.10651902797153	6.065269885763	6.365527508201	6.58901491051348	-0.360224256766542	0.182492310276545	0.47903894944587
Merged-chr6-29544135-3	chr6	29544043	29544243	+	917.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177296, intron 21 of 22)	intron (NM_177296, intron 21 of 22)	14861.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	4.18323987882155	4.38007240306246	4.42338579901607	4.414764052047	3.80373272463093	3.70066839431146	3.69914756120945	4.09027298346218	-1.41733112193433	0.00140340466210084	0.0177052358106479
Merged-chr1-120123192-3	chr1	120123162	120123362	+	984.0888669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172074, intron 1 of 4)	intron (NM_001172074, intron 1 of 4)	2075.0	NM_001172074	73103.0	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	3.96386002577111	4.19459351577262	4.31505214029425	4.0304345322364	4.18137318683925	3.98055953615293	3.84430670628197	3.8015478222907	-0.419259776912871	0.340904937597579	0.650038108528438
Merged-chr7-7300707-4	chr7	7300611	7300811	+	957.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126157, exon 1 of 3)	non-coding (NR_126157, exon 1 of 3)	140.0	NR_126157	12727.0	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2|clC-4	chloride channel, voltage-sensitive 4	protein-coding	4.4125482973237	4.32686461579865	4.95988690864725	4.58656658735579	5.31525792578402	4.95301479154212	5.15382276067235	5.38799058713903	1.23944101981682	0.000410954829417163	0.00657792877402738
Merged-chr16-56715744-4	chr16	56715659	56715859	+	876.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357126, intron 1 of 8)	intron (NM_001357126, intron 1 of 8)	1691.0	NM_001357124	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	4.58255237209996	4.24519358989316	4.35385586512445	4.31133280197087	4.26066700805131	4.19827538025369	4.24821830307694	4.12227151232743	-0.394987236398622	0.312546767442359	0.624504855620566
Merged-chr5-147532095-4	chr5	147532006	147532206	+	906.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 13 of 18)	intron (NM_028291, intron 13 of 18)	101950.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	4.53798466486548	4.38134783617376	5.31950169427915	5.66394725782405	3.84339650585823	4.31762135608867	4.79541550571241	4.62211250067615	-1.28241478952022	0.0774526067273975	0.30102648761873
Merged-chr1-184534244-4	chr1	184534129	184534329	+	897.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040472, intron 2 of 5)	intron (NR_040472, intron 2 of 5)	23462.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	4.54520818730886	4.76804281557797	4.213816393528	4.51607526140657	5.0474809218906	4.54454095641118	4.43936936844847	4.84027923181988	0.480192877232473	0.216095729168154	0.522486426388804
Merged-chr3-130073237-4	chr3	130073147	130073347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12340.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	6.74496578489011	6.92690487699121	6.80316518463686	6.72845261596853	6.8187099537215	6.84781291864269	6.97290789726295	6.39079748029556	-0.033473498138886	0.877109959725116	0.953943859414999
Merged-chr14-59185921-2	chr14	59185821	59186021	+	944.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7172.0	NM_001004158	380907.0	Mm.81009	NM_001004158	ENSMUSG00000053868	Gm5142	EG380907	predicted gene 5142	protein-coding	3.30194151535829	3.23099670850132	2.98632542533101	3.03093171697803	3.24201043600663	3.3583120510697	3.34365103939288	3.50727665498013	0.83695016876387	0.122598187264148	0.388064942912562
Merged-chr10-79850138-3	chr10	79850030	79850230	+	860.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	L1MB8|LINE|L1	-4302.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	4.03973995603866	3.74771887314858	3.9545581215759	3.33374001221288	3.68372662235468	3.65707921632882	3.64122626973194	3.86006320570011	-0.215870958950981	0.673674827029283	0.865848986388019
Merged-chr19-40659171-3	chr19	40659064	40659264	+	865.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009848)	promoter-TSS (NM_009848)	-606.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	3.52382211144791	3.63366541993266	4.00219940201385	3.62758104473337	3.49811286263018	3.58084279850266	3.45264595691718	3.73533160247773	-0.428670477953143	0.388322032201547	0.688959693164683
Merged-chr1-173673683-3	chr1	173673572	173673772	+	665.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162938)	promoter-TSS (NM_001162938)	-8.0	NM_001162938	100033459.0	Mm.303377	NM_001162938	ENSMUSG00000066677	Ifi208	9830148g24rik|E430029J22Rik|NG2creBAC|Pydc3|Pyr-rv1|Tg(Cspg4-cre)1Akik	interferon activated gene 208	protein-coding	3.01693474664858	2.92308329784112	3.01728785714304	2.82266295910998	3.20687878659932	3.12873466035128	3.34495180625503	3.45399242318508	1.40454815596642	0.0122602520415072	0.0912837322241045
Merged-chr17-83297567-3	chr17	83297490	83297690	+	796.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-53341.0	NM_001114361	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	3.19098691148765	2.97194199946799	3.07336529153037	3.03467994809442	2.85818929291119	3.18475093945007	3.12185448241926	3.39697225735564	0.325127798649304	0.578634247522122	0.814850274099854
Merged-chr14-118937819-4	chr14	118937719	118937919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008929)	promoter-TSS (NM_008929)	-113.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	9.23036342083385	9.45804067828307	9.60043989510895	9.55667269157444	9.52562397822446	9.39681856611493	9.64300253691906	9.46477455532782	0.0494607624505408	0.743179334355389	0.898813365957832
Merged-chr6-142748118-4	chr6	142748006	142748206	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8580.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	3.85381238914348	3.76564732971123	4.82714456077414	4.2999465926842	3.96785683850593	4.03600204242747	4.0011744572896	4.25008225061126	-0.472921440558328	0.342279212848874	0.65131250740384
Merged-chr12-81796769-3	chr12	81796654	81796854	+	872.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR18-int|LTR|ERVK	-15584.0	NM_001174107	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	3.64166739674648	3.55335856961364	3.20617515109177	3.77617807773992	3.72764525542087	3.95924638319402	3.62752447072981	3.64012542816208	0.520921699844925	0.31656774289784	0.628499815121202
Merged-chr11-83603641-3	chr11	83603525	83603725	+	933.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 2 of 8)	MLT1G|LTR|ERVL-MaLR	-10538.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	3.71117144050979	3.76402171197877	3.61141310188637	3.74608323733196	3.64710113689722	3.43151407443971	3.43255356449477	3.44280761738988	-0.690631888497747	0.16024941950023	0.448276417001645
Merged-chr16-23492979-4	chr16	23492874	23493074	+	927.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359083, intron 4 of 10)	MIR3|SINE|MIR	27841.0	NM_008555	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	4.79153608947046	4.40949448768208	4.52171496908971	4.78612242510121	4.77954273882628	4.77775712162565	4.62320072274606	4.47514929849585	0.057323010540066	0.873828931205689	0.952719146730333
Merged-chr8-22859317-4	chr8	22859239	22859439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081149)	promoter-TSS (NM_001081149)	-200.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	7.78850054897515	7.8735963565599	8.0868466467691	7.52541821924425	8.31809200987078	8.30168461121153	7.970574909906	7.94179858135296	0.415747571456468	0.0346944850556408	0.184382082141217
Merged-chr16-91648261-4	chr16	91648133	91648333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019973, intron 1 of 4)	CpG-5863	409.0	NM_178880	20658.0	Mm.46401	NM_019973	ENSMUSG00000022961	Son	2900011L12Rik|AA409051|AU067731|C81487|mKIAA1019|nrebp	Son DNA binding protein	protein-coding	4.95935517644659	5.35579865450443	5.40346316270535	4.82612992303631	5.02455096557087	5.24506570208863	4.93645839941839	5.61911922089233	0.149403822798323	0.670393603468477	0.864048569537586
Merged-chr17-10326762-4	chr17	10326662	10326862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045461, intron 2 of 2)	intron (NR_045461, intron 2 of 2)	2160.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	7.99164062464596	8.06002623072692	8.5059414095554	8.25151722098017	7.98610768602479	8.16362262543532	8.15354680689229	8.0421575062208	-0.169328426730457	0.343268764678991	0.651976439766621
Merged-chr17-5454418-4	chr17	5454305	5454505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14145.0	NM_027457	70544.0	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	6.01515828989288	5.93593062105091	6.36345769952901	6.28074463429666	6.75829670866935	6.40853266317248	6.43315512971168	6.58675572171852	0.586835800987171	0.013140192323691	0.0957030338082475
Merged-chr11-11682868-4	chr11	11682806	11683006	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3019.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	5.0243120509976	4.71072165970394	4.41182007106255	4.84221799621617	4.51698150587872	4.54244978808619	4.52313873718073	4.31319877528634	-0.638477096409354	0.0865024556581823	0.320785573163163
Merged-chr11-97540336-4	chr11	97540236	97540436	+	743.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 4 of 19)	intron (NM_018873, intron 4 of 19)	34790.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	3.56671508930531	3.73184938886764	3.56716063674314	3.62466038041831	3.9126487317053	3.96105822972986	3.72233633037586	4.14137071634735	0.91801219382349	0.0437170346762926	0.212826401150662
Merged-chr17-36042836-4	chr17	36042718	36042918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347382)	promoter-TSS (NM_001347382)	-76.0	NM_001359756	15039.0	Mm.195061	NM_010396	ENSMUSG00000056116	H2-T22	27b|H-2T17|H-2T22|H2-T17|T22b	histocompatibility 2, T region locus 22	protein-coding	7.95235564091233	7.98506339778274	7.97968204587397	7.6499979665067	7.37906827299659	7.62867607651571	7.07942955293799	7.1603981693325	-0.744340329406673	0.000215181721974328	0.003865386867084
Merged-chr5-117485582-3	chr5	117485479	117485679	+	737.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	71577.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	3.35131492093487	3.17984654900779	3.3517841572149	3.53210763900826	3.07449888413452	3.02160858316731	3.04513350878198	3.40179551501699	-0.845693955070507	0.142117431120194	0.419498077038414
Merged-chr14-68582142-4	chr14	68582043	68582243	+	947.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021475)	promoter-TSS (NM_021475)	-71.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	4.65861001627909	5.04187444850433	4.7014939891186	5.43909290687689	4.84960668684475	4.75003302227856	4.87039445506092	4.85437026948503	-0.385058936924359	0.301219125706601	0.61321576903873
Merged-chr4-45941883-4	chr4	45941775	45941975	+	861.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198660, exon 32 of 38)	exon (NM_198660, exon 32 of 38)	-23460.0	NM_001290475	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	3.98447073807817	4.4681633252703	4.23273440752278	4.17224543411751	4.0596700113222	4.26483719373386	4.30023231455719	4.3985732673514	0.0720243326021422	0.859952390171772	0.947077272207401
Merged-chr13-52985581-4	chr13	52985482	52985682	+	961.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4543.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	5.259962881287	4.47193157928	4.89948547610886	4.72365743355851	4.85840617738436	4.80574190559843	4.76748990671216	4.93057312928402	-0.0331329236348175	0.926872449922571	0.973180524442983
Merged-chr11-21081279-4	chr11	21081180	21081380	+	993.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-10044.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	5.44381329856029	5.03730372508037	4.95046101205002	5.05700369577786	5.45517680079758	5.39455458350612	5.16502030983366	4.69916275324197	0.160974606450228	0.64025432830076	0.848037046355902
Merged-chr13-99344041-4	chr13	99343911	99344111	+	834.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173757)	promoter-TSS (NM_173757)	667.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	4.05187638220095	3.93270603386169	4.05248022987545	4.21453217104952	3.8594814532756	3.91511766112476	4.03501584005947	4.13993213513561	-0.239933481700277	0.573548761484489	0.811888602285473
Merged-chr6-114908170-4	chr6	114908062	114908262	+	906.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	Lx7|LINE|L1	13659.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	4.26133382814264	4.12449963842138	4.21768033238189	4.23926791657822	4.34353917337232	3.7160514840209	4.32620002884901	4.4598964299977	0.0861284548884164	0.842093977658834	0.940110307562683
Merged-chr4-97772783-4	chr4	97772653	97772853	+	958.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-4873.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	4.69301731942165	4.58125909680655	4.16805300018853	4.53875357246569	4.49897014936948	4.63107266281379	4.43739477599183	4.72602612939412	0.138581138627512	0.710229921985295	0.884021744315996
Merged-chr4-41388715-4	chr4	41388606	41388806	+	768.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290454, exon 6 of 6)	exon (NM_001290454, exon 6 of 6)	36743.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	4.07514939104164	4.09721772392772	3.98141029005892	4.04298759760264	3.54737842301705	4.05427145863805	3.91513571121643	4.20261987157423	-0.291481846714691	0.523968871168867	0.782704938068323
Merged-chr6-135323573-4	chr6	135323445	135323645	+	934.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13161.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	4.61198797556987	4.72731023191054	4.61273462638867	4.12648926968034	4.73466509446173	4.74597951176221	4.66691439172325	4.48575294351754	0.312018898715123	0.415705524973232	0.709886482687489
Merged-chr5-65120089-4	chr5	65119963	65120163	+	967.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347355, intron 1 of 10)	ORR1D2|LTR|ERVL-MaLR	-11168.0	NM_001359401	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	4.62718013825601	5.02926824136716	5.2207999609509	4.82508422962475	4.87816199308982	4.7170809202107	4.9846060577915	5.06981149392918	-0.0373047804544743	0.912951052100577	0.96737778834115
Merged-chr10-87675214-4	chr10	87675117	87675317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153422.0	NM_008777	18478.0	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	6.40872023884537	6.73639016364699	6.54615636480563	6.53741915376868	6.47518362755743	6.58638717268998	6.51273733602332	6.49211921084564	-0.0720048007544346	0.731781078326055	0.893790781511922
Merged-chr6-17612834-4	chr6	17612713	17612913	+	952.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24197.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	4.95288699165973	4.4916441747981	4.81028802851187	4.88073435053582	5.03767747984208	5.19073841145564	4.66952149896729	4.9837714703229	0.371242205113003	0.281044678969863	0.593153291080506
Merged-chr14-64050668-4	chr14	64050583	64050783	+	906.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34727.0	NM_001081063	71037.0	Mm.19977	NM_001081063	ENSMUSG00000034623	Prss55	4933401F05Rik	protease, serine 55	protein-coding	4.41761688884566	4.85782130207013	4.80406212809764	5.07254106976253	4.4173456243128	4.35354076904205	4.15463391447669	4.27327396994398	-1.16087985011259	0.00314986658617299	0.0331741995654417
Merged-chr6-53370148-4	chr6	53370036	53370236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 2 of 10)	intron (NM_001327821, intron 2 of 10)	82833.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	7.80286211549329	7.97460834859178	7.9060259527431	7.9215915884067	7.6328097683298	7.47525674396417	7.73569365020997	7.49115870181852	-0.410131139763822	0.014728469870172	0.103492135204218
Merged-chr9-122115730-2	chr9	122115630	122115830	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1536.0	NM_001164572	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	3.07378063386513	3.06545856371	2.81781916076545	2.89763009640018	3.16978808514266	3.12375667591513	3.06264851222055	3.01314369830296	0.542511125959308	0.345032492384576	0.653357561969643
Merged-chr8-41016367-4	chr8	41016292	41016492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 6 of 13)	intron (NM_001005863, intron 6 of 13)	-1076.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	6.96766097477626	6.90788483107993	6.65030419458851	7.03597141730141	8.03176136491097	8.12608088021994	8.11193931437782	7.8899963153881	1.49855123131654	6.99399094013973e-16	1.30320754222043e-13
Merged-chr10-91137564-4	chr10	91137481	91137681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13618.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	8.0489517337499	7.92677944449684	8.16675874706484	7.98156095199887	7.80730067993092	7.77630048082568	8.06821182146843	7.64748440326062	-0.254393925136375	0.143879421831078	0.422456619359555
Merged-chr5-93266322-4	chr5	93266232	93266432	+	943.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1241.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	4.50840068745185	4.76122206074933	3.97391905402436	4.12964448860625	4.84739416430647	4.79383473429188	4.17625146058885	4.08610690175869	0.332493597803137	0.480094346334588	0.755678709554239
Merged-chr1-37544066-2	chr1	37543966	37544166	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-3050.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	3.17281068895121	3.01246364034722	3.33693020047462	3.05051690842587	3.20543292696975	3.02485836148707	3.16136152239988	3.28279772236044	0.125021959143596	0.823514961329163	0.932313798231142
Merged-chr19-8942439-3	chr19	8942342	8942542	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_144872)	TTS (NM_144872)	522.0	NM_011842	23942.0	Mm.25339	NM_011842	ENSMUSG00000071646	Mta2	AW550797|Mata1l1|Mta1l1|mmta2	metastasis-associated gene family, member 2	protein-coding	4.16292461402982	4.28320233395947	4.6266973264422	4.17124182720325	4.09679888200336	4.56732394789728	4.28803316262584	4.65827779472848	0.229410131519188	0.579118147330326	0.815233759185512
Merged-chr8-85081018-3	chr8	85080932	85081132	+	904.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026399)	promoter-TSS (NM_026399)	69.0	NM_001001493	414077.0	Mm.35790	NM_001001493	ENSMUSG00000059355	Wdr83os	-	WD repeat domain 83 opposite strand	protein-coding	3.92271432595974	4.21735090724952	3.60140777189347	3.52070209325885	3.82138546031008	3.59190127415498	3.90611989661861	4.05579985515621	0.0367715721801192	0.941886481908848	0.978994726943092
Merged-chr4-6370802-4	chr4	6370712	6370912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	5132.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	5.6399872012797	6.02312612096218	7.15872926194801	7.33169597749687	5.62223042263536	5.56395275438769	6.06494392013021	5.75270722689298	-1.44558882403248	0.0147779332243339	0.103704871238772
Merged-chr10-118797514-3	chr10	118797402	118797602	+	842.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71401.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	4.2639252558915	3.88806283863451	4.09941270112188	3.82027044828643	4.02245728537962	4.22483042662185	3.84151254388346	3.49107200493162	-0.26932306894211	0.580290928407069	0.815718435955212
Merged-chr6-54992972-4	chr6	54992868	54993068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026637)	promoter-TSS (NM_026637)	-101.0	NM_026637	110175.0	Mm.294708	NM_026637	ENSMUSG00000002797	Ggct	A030007L17Rik|AA673177|Gctg|Ggc	gamma-glutamyl cyclotransferase	protein-coding	9.27505238897469	9.14685656710384	9.27934458309683	9.32759283901661	9.07541765582252	9.25327891040991	9.24764204027803	8.86248066793566	-0.174632079847587	0.257516097068973	0.56931725286596
Merged-chr5-64290100-4	chr5	64289974	64290174	+	982.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	59717.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.32437959200376	4.02281609098301	4.23752325673304	4.62887509768189	4.34192439708813	3.73473436968429	4.66591508679359	3.98651559490788	-0.230291294548478	0.636221324084714	0.846064411527807
Merged-chr1-165706387-4	chr1	165706330	165706530	+	758.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	1664.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	3.35005207739459	3.17748349374549	3.40286428039279	3.07156755922776	3.55145037543515	3.22760313928366	3.10643414825385	3.04992962997606	0.035063771428653	0.951703194949088	0.982811735967285
Merged-chr5-93128077-4	chr5	93127970	93128170	+	982.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009818, intron 1 of 9)	intron (NM_001009818, intron 1 of 9)	34654.0	NM_001347377	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	4.98922988506039	4.76724697677777	5.02331915025674	5.23456714034112	4.87356632068811	4.94551243670308	4.89729601899232	4.84437586168212	-0.278526134623166	0.395518333441816	0.694422916456304
Merged-chr4-137578432-4	chr4	137578335	137578535	+	880.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3255.0	NM_001033979	435811.0	Mm.359646	NM_001033979	ENSMUSG00000094035	Ldlrad2	-	low density lipoprotein receptor A domain containing 2	protein-coding	4.63611169183873	4.30103302079707	4.0748766879353	4.16462702036132	4.28232173707051	3.91708764477875	4.05788104323538	4.25984428822906	-0.398560931614747	0.352831171181333	0.659735990057428
Merged-chr10-118178996-2	chr10	118178881	118179081	+	779.666626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-25983.0	NM_016971	50929.0	Mm.103585	NM_016971	ENSMUSG00000074695	Il22	IL-22|IL-22a|ILTIFa|Iltif	interleukin 22	protein-coding	4.32990101516255	3.80915995169463	4.3306115677499	4.59405286938533	3.45030909555904	4.18974275728534	3.94407265159718	4.28694953497636	-0.754546962809496	0.143697915776077	0.422097802369817
Merged-chr10-115329341-4	chr10	115329261	115329461	+	925.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13770.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	4.44561422805061	4.46843801515432	4.44632583665665	3.86470431057059	4.21898803055116	4.5346502658524	4.69150000524184	4.87308338180157	0.638012467439451	0.133959323336002	0.407551438524072
Merged-chr7-98361428-4	chr7	98361312	98361512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168539)	promoter-TSS (NM_001168539)	-84.0	NM_001168539	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	6.39097904189004	6.07266380647395	5.97514047026957	6.19554143635952	6.39715527569556	6.42431770353721	6.25417327040395	6.14616414322682	0.218474056290191	0.34923866030753	0.656814505826873
Merged-chr18-65565843-3	chr18	65565732	65565932	+	988.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 1 of 6)	intron (NR_105742, intron 1 of 6)	-14398.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	4.47633046528918	4.37777665562905	4.08919696941559	4.43031947548603	3.97749604927851	4.3122152643792	4.07217757551687	4.13610943417206	-0.588708928675889	0.148349543495946	0.430071295027352
Merged-chr5-64360767-4	chr5	64360664	64360864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107178.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	5.47782404344155	6.18216180798535	5.71565294282419	5.45312417199441	5.28723004448438	5.7645382586877	5.3309131567076	5.41578091990954	-0.478981608000815	0.131723937090576	0.404154408300793
Merged-chr6-91683420-4	chr6	91683322	91683522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009320)	promoter-TSS (NM_009320)	-645.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	7.86123575894197	7.71701329982891	8.21182312362933	8.13776346666618	7.81323837830698	8.00220112602876	7.87561758650602	7.77236283687781	-0.173876496785218	0.345878323038188	0.654200694454941
Merged-chr8-94812896-6	chr8	94812733	94812933	+	894.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011332)	TTS (NM_011332)	2380.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	2.83272186730138	2.75225506817608	2.96312635163387	2.88583900960024	2.90538285338361	3.07328489307837	2.95244561843617	3.33424010250395	0.891312654707443	0.138702159021198	0.414278921445591
Merged-chr6-82781077-4	chr6	82780963	82781163	+	914.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6609.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	4.14603738722206	4.58979968131742	4.2369102710048	4.17781216731144	4.27994350123302	4.0676763360028	3.92919460675605	3.94256357367171	-0.572806127986798	0.183819366224873	0.481012966940989
Merged-chr19-44397989-3	chr19	44397904	44398104	+	913.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009127, exon 6 of 6)	exon (NM_009127, exon 6 of 6)	9705.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	3.76047633636914	3.3162564538491	4.20445512977643	3.42986907670204	3.43629695883289	3.34884972441925	3.74426347287201	3.49153785385006	-0.643251386600417	0.256898668036197	0.568647554151895
Merged-chr5-121586647-4	chr5	121586524	121586724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009656, intron 1 of 12)	intron (NM_009656, intron 1 of 12)	7200.0	NM_009656	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	5.54921252548445	5.70238858889169	5.77530103835419	5.68293629693701	5.63198256495035	5.45451901219717	5.54933289264129	5.54629210299463	-0.216768412133465	0.406651142436682	0.703051260897899
Merged-chr6-129514412-3	chr6	129514313	129514513	+	807.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081186, intron 2 of 4)	intron (NM_001081186, intron 2 of 4)	1856.0	NM_001081186	330428.0	Mm.44237	NM_001081186	ENSMUSG00000030160	Tmem52b	D630042F21Rik	transmembrane protein 52B	protein-coding	3.56155927799662	3.9321132906645	3.6728575313865	3.62756757850298	3.5323217338578	3.89480351605636	3.75886173087841	3.50114200418364	-0.0876501374746617	0.85710672567899	0.94616653253742
Merged-chr15-73731057-4	chr15	73730959	73731159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	6129.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	6.04309258675604	6.33930401479307	6.10642261636227	5.94950003523594	6.27760157441712	6.06255956874923	6.09512908187138	5.58478865603711	-0.114042262684174	0.670424194787394	0.864072351581145
Merged-chr1-178391617-3	chr1	178391547	178391747	+	724.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14371.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	3.31274087556696	3.14564253541638	3.31317260526846	3.12337422385442	3.3653528233575	3.64670907229092	3.5138598159662	3.31142650145278	0.868981276718001	0.0953572200789248	0.337948786233754
Merged-chr2-38927315-4	chr2	38927197	38927397	+	975.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010264)	promoter-TSS (NM_010264)	-836.0	NM_010264	14536.0	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	5.10103170683043	4.92520497013378	5.03737477921702	4.40760153253582	4.98806251569659	4.9982523352597	5.19555159254592	5.12940369191257	0.403981592638032	0.252398447101748	0.563668364211162
Merged-chr5-142877521-4	chr5	142877399	142877599	+	782.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033312, intron 4 of 4)	intron (NM_001033312, intron 4 of 4)	17739.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	3.84450795921107	4.08421878406717	3.49342079422635	3.46391152863467	3.83993572040299	4.01870874976276	4.10266397930123	4.03367305033443	0.72895385671058	0.130875471693121	0.402721996924723
Merged-chr15-35147004-3	chr15	35146884	35147084	+	634.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357821, intron 1 of 11)	intron (NM_001357821, intron 1 of 11)	8822.0	NM_001357821	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	3.38333932471198	3.20141422759869	3.27965878433511	3.0815315537424	2.8449056315605	3.33812900259723	3.21134177090131	2.83036384614962	-0.655817433930332	0.286053612544802	0.597615363323773
Merged-chr5-129501877-4	chr5	129501785	129501985	+	713.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359952, intron 1 of 17)	CpG	654.0	NM_172276	231769.0	Mm.288714	NM_172276	ENSMUSG00000029439	Sfswap	1190005N23Rik|6330437E22Rik|AI197402|AW212079|SWAP|Sfrs8|Srsf8	splicing factor SWAP	protein-coding	3.91410557209807	3.66916307055334	3.81214890284547	3.62952172200874	3.88347655207694	4.17934493740296	4.16079226586906	3.86216794080994	0.774303639379671	0.0807697653625087	0.308296392574968
Merged-chr13-23571817-4	chr13	23571724	23571924	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178187)	promoter-TSS (NM_178187)	424.0	NM_178196	319181.0	Mm.261673	NM_178196	ENSMUSG00000058385	Hist1h2bg	-	histone cluster 1, H2bg	protein-coding	4.93809327205381	4.6517508452657	5.10263758039057	4.44557878419412	4.99351384901711	5.0049023737876	5.07725107420144	5.09908831966424	0.513773185178831	0.139454547099229	0.415219409686941
Merged-chr7-5058330-4	chr7	5058257	5058457	+	917.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146178, intron 3 of 4)	intron (NM_146178, intron 3 of 4)	1631.0	NM_146178	232821.0	Mm.482157	NM_146178	ENSMUSG00000035228	Ccdc106	BC018462	coiled-coil domain containing 106	protein-coding	4.86623132540361	4.84923382965914	4.37618516287074	4.69176993023261	4.81587507486609	5.03731389304896	4.49716756091331	4.60075211063403	0.0921122293625934	0.801793948766875	0.923559097579232
Merged-chr14-70520488-4	chr14	70520386	70520586	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009755)	promoter-TSS (NM_009755)	186.0	NM_001360021	12153.0	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding	5.47694815920512	4.91965827887627	5.12511125606968	4.9875389674871	4.97541017502185	4.72316684596643	4.70124324499396	5.24103846445492	-0.39443746662318	0.259668671526218	0.57153765949982
Merged-chr18-62023315-4	chr18	62023207	62023407	+	899.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70232.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	3.73407246248879	3.84848270573549	3.62431422247857	3.86371422676237	4.17317512024192	3.95663869552653	3.55274203912048	3.43802712176046	0.143584563647332	0.779687898075274	0.914094261477771
Merged-chr1-5083170-4	chr1	5083077	5083277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310442)	promoter-TSS (NM_001310442)	91.0	NM_001310442	108664.0	Mm.27082	NM_133826	ENSMUSG00000033793	Atp6v1h	0710001F19Rik|AU022349|CGI-11|SFD|SFDalpha|SFDbeta|VMA13	ATPase, H+ transporting, lysosomal V1 subunit H	protein-coding	7.43857023337078	7.5674441916055	8.04323149021974	7.6530883514543	7.22828271350114	7.43859859414287	7.4415529688501	7.6505362981339	-0.331219748130666	0.107953974779507	0.362559597364667
Merged-chr8-56865765-3	chr8	56865680	56865880	+	923.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	314646.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	3.15450731527413	3.29230412708214	3.4780607959246	3.45567167836601	2.80827870221364	3.13640131097622	3.14368494472543	3.21304456815941	-1.09522795392436	0.0659989854303709	0.273584518693628
Merged-chr17-5493511-4	chr17	5493371	5493571	+	972.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146073, exon 1 of 9)	exon (NM_146073, exon 1 of 9)	871.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	4.44461848985492	4.4280625303491	5.01640749331581	4.98743453140568	4.64923600704619	4.62478770875612	4.89684778464913	4.98193728364668	0.0690429489980197	0.856020107741961	0.945805085979402
Merged-chr14-10228196-4	chr14	10228123	10228323	+	928.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	225235.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	4.43819706600183	4.56249734163816	4.73263479825985	4.93341461819566	4.66009620476286	4.70393658086256	5.03559399362529	4.80288188069387	0.225073774681068	0.536129236633814	0.790213033830861
Merged-chr11-18871845-1	chr11	18871745	18871945	+	724.0	f0_balb.idr	Intergenic	CpG	147124.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	2.97026520879032	3.06970090349216	3.43185296267591	2.99041476180559	2.91259697518993	2.80402157195166	2.6908887850798	2.90601351859514	-1.27588496472571	0.0497231518191463	0.230870464666342
Merged-chr1-120948559-4	chr1	120948456	120948656	+	959.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-138849.0	NR_038008	98452.0	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	4.42195835341809	4.35719961106133	4.55002591684784	4.55301870879528	4.69572995603998	4.63986229409927	4.71476904930182	4.46370997227385	0.345131162329695	0.331233847795661	0.642422181260145
Merged-chr15-25550471-4	chr15	25550376	25550576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72074.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	5.29802918812287	5.25783861229313	4.96124978912802	5.07947696174227	5.39886572606571	5.31640348303664	5.53688258100689	5.13767363020927	0.377733251249266	0.204868596576245	0.508383961538483
Merged-chr12-87266739-4	chr12	87266633	87266833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142580)	promoter-TSS (NM_001142580)	5.0	NM_146036	217737.0	Mm.22626	NM_146036	ENSMUSG00000021037	Ahsa1	BC023857|p38	AHA1, activator of heat shock protein ATPase 1	protein-coding	5.82341012420426	5.89787307770493	5.92099383348943	5.90702129800389	6.02888183152165	6.00158403604133	6.23256145456184	6.3940620814612	0.438811015471745	0.0685703822856291	0.279645170274158
Merged-chr4-107347593-4	chr4	107347485	107347685	+	950.839294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205156, intron 7 of 8)	intron (NM_001205156, intron 7 of 8)	-20199.0	NM_028355	72787.0	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	4.07557257890085	3.86782181155993	3.82538055457128	3.90014353631513	3.80753397074792	4.0019881114071	4.01218962065012	4.42817412677274	0.426518647092	0.338939624479779	0.648223242193853
Merged-chr2-125673042-4	chr2	125672945	125673145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025613)	promoter-TSS (NM_025613)	-55.0	NM_025613	58521.0	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	6.46357220470055	6.35546729207724	6.02818227005603	6.53052744952759	6.15959323195344	5.95878085575596	6.22384530978331	6.28868012132795	-0.310214521761192	0.198306748935934	0.499800779736617
Merged-chr2-167219562-4	chr2	167219490	167219690	+	649.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008968, intron 5 of 9)	intron (NM_008968, intron 5 of 9)	20947.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	3.58868534527745	3.53872877874318	3.16994660301833	3.28080432054388	3.67983680723768	3.54068024076091	3.46882544188587	3.68547333844263	0.659836419945764	0.196293963020583	0.497277573899066
Merged-chr1-38011859-4	chr1	38011777	38011977	+	907.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 1 of 23)	intron (NM_198303, intron 1 of 23)	13867.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	4.5238975244534	4.48343045143185	4.48090339092604	4.92913326684008	4.78162020275731	4.65592709837356	4.66392712164197	4.68281587961536	0.121276905072247	0.741620045155064	0.898331799361702
Merged-chr18-32311972-4	chr18	32311886	32312086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65231.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	5.14469085791387	5.68580867362727	5.2161086944668	5.32764492318849	5.68537542762934	5.89253585369675	5.59591034379351	5.31158509320585	0.470182873739828	0.119488572510541	0.382508527219601
Merged-chr5-115475862-3	chr5	115475786	115475986	+	877.9166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8411.0	NM_001167691	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	3.83892780552847	3.64332232517946	3.55190696027777	3.4790970541636	4.072312328262	4.28556599656986	4.05628971208481	3.88786882341198	1.3087555317082	0.00355356897509974	0.0364728891245313
Merged-chr1-106030547-4	chr1	106030453	106030653	+	929.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001122676, exon 13 of 14)	exon (NM_001122676, exon 13 of 14)	40147.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	4.7344083312352	4.69653032581478	5.13776195448819	5.42143231175537	4.37492485861785	4.45385992757128	5.05352874145158	4.60812875622044	-0.814279204330526	0.0435632105533408	0.212440789529751
Merged-chr17-27827166-4	chr17	27827063	27827263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6621.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	6.54521080628381	6.79619360833764	5.8085482820901	5.7943277128002	6.55035112893977	7.03531471367971	6.0054362397068	6.22560276178354	0.298338612378153	0.383539202453769	0.685433400480921
Merged-chr11-117721953-4	chr11	117721855	117722055	+	839.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198022, exon 5 of 22)	exon (NM_198022, exon 5 of 22)	57693.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	4.06569418019635	4.42514293249956	4.24658208727897	4.28510393955763	4.07063124136587	3.85802632066276	4.09605093551899	3.91014979138158	-0.710984759411701	0.091106499877204	0.329806071466875
Merged-chr3-88939955-4	chr3	88939861	88940061	+	829.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164533, intron 2 of 11)	B3|SINE|B2	10321.0	NM_022994	65111.0	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	3.70150475155989	3.8041273217671	3.30220082473096	4.19394243639109	4.00488588808817	3.93417753887994	3.84891399771038	4.32728104066668	0.64931527847521	0.239556115919033	0.550008540578056
Merged-chr11-117724715-4	chr11	117724607	117724807	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 5 of 21)	intron (NM_198022, intron 5 of 21)	54941.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	5.47667282119215	5.38425014134263	5.42351938512311	5.63841918027193	5.12630905178446	5.21726540739294	5.34023304327457	5.03568799665366	-0.567124736502291	0.0506236448868361	0.233331633711073
Merged-chr19-61244897-4	chr19	61244794	61244994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16476.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	7.03925866497575	7.01542822318229	7.32602797212636	7.21926517423894	7.06312097740335	7.08788540875541	7.11098304458311	6.89200812432775	-0.160330891633271	0.403992823742608	0.701206012163242
Merged-chr2-156840775-4	chr2	156840732	156840932	+	909.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291124, intron 1 of 3)	CpG	825.0	NM_173396	228839.0	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	3.68703421782153	3.15711933128152	3.77409229730446	3.0860396505343	3.34863948651025	3.31718787005543	3.19184296142557	3.32540430665857	-0.547337351677825	0.352407449379444	0.659568292805988
Merged-chr6-129713798-4	chr6	129713692	129713892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012520, intron 1 of 5)	intron (NM_001012520, intron 1 of 5)	3340.0	NM_001012520	503550.0	Mm.376476	NM_001012520	ENSMUSG00000067610	Klri1	-	killer cell lectin-like receptor family I member 1	protein-coding	6.67904456929479	6.04139834437975	6.665314863222	6.74389138114843	6.45856951870982	6.79572022535359	6.81168319071337	6.73333944417032	0.193492941466507	0.432622488732534	0.722596762180336
Merged-chr1-164218327-3	chr1	164218197	164218397	+	957.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007976, intron 24 of 24)	intron (NM_007976, intron 24 of 24)	-30749.0	NM_001276455	116914.0	Mm.35444	NM_054087	ENSMUSG00000040918	Slc19a2	AV276020|AW322295|DDA1|THTR1|TRMA|ThTr-1	solute carrier family 19 (thiamine transporter), member 2	protein-coding	3.92445859458135	3.94372946924219	4.20580573175372	3.873290239322	3.15376133595606	3.49208649071528	3.22172251959422	3.72909665087006	-1.89150265184961	0.000644519387958327	0.00944149938577603
Merged-chr7-34168526-4	chr7	34168419	34168619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016682)	promoter-TSS (NM_016682)	10.0	NM_016682	50995.0	Mm.27560	NM_016682	ENSMUSG00000052997	Uba2	AA986091|Arx|Sae2|UBA1|Ubl1a2|Uble1b	ubiquitin-like modifier activating enzyme 2	protein-coding	6.44371333862229	6.8164979486661	6.70665632264044	6.82554871383948	6.70732966549541	6.95424208284128	6.53260353688543	6.61000542539035	-0.0115474755070498	0.957886060452634	0.984952572078039
Merged-chr17-87321831-2	chr17	87321731	87321931	+	850.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 6 of 19)	B2_Mm2|SINE|B2	38945.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	2.79636203252358	2.91590266044271	2.65996767410492	2.55502220073374	2.93901180401409	2.96890455824076	2.96630139998671	2.85866614009929	0.93313710567103	0.134697009171835	0.40855662913206
Merged-chr11-69759485-4	chr11	69759386	69759586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291068)	promoter-TSS (NM_001291068)	-853.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	6.00599410786429	6.27995709604583	5.87170604009606	5.40636896850523	6.18795112405777	6.32273438655525	5.69123152236347	5.91421707231725	0.212784931090458	0.48684434853426	0.7603696580653
Merged-chr13-59843001-4	chr13	59842896	59843096	+	759.075012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-19849.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	3.90776400449456	4.08804578722623	3.85472990783314	3.91884592519837	4.13429470433905	4.13228609043238	4.21197482938679	4.00690941860895	0.474119850599714	0.250607728338367	0.561773926728076
Merged-chr10-78136153-4	chr10	78136075	78136275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33593.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	6.83980311339498	7.25907495992696	7.11036149936221	5.7819472798638	7.48052021524319	7.48960627720098	7.5156314626081	6.54874454805844	0.609578436079782	0.228856916039826	0.53772385379279
Merged-chr1-36308211-4	chr1	36308140	36308340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290727, intron 1 of 5)	intron (NM_001290727, intron 1 of 5)	507.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	7.73142603797902	7.84214140752428	8.05453894471001	7.93198494612941	7.69521128052252	7.79949128460505	7.72721802709333	7.91629688850958	-0.146175117406965	0.388787395681617	0.68909828524669
Merged-chr18-34247577-4	chr18	34247476	34247676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360979)	promoter-TSS (NM_001360979)	-118.0	NM_001360980	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	5.74247885938176	6.0763556375816	6.33047685628068	5.75718519214586	6.04544893320339	6.18285646144877	6.13826008231526	5.86614104508458	0.116956727199974	0.658926251284317	0.858075830194168
Merged-chr3-95043099-4	chr3	95043010	95043210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008951)	promoter-TSS (NM_008951)	-496.0	NM_008951	19185.0	Mm.2261	NM_008951	ENSMUSG00000005625	Psmd4	Af1|Mcb1|angiocidin	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	protein-coding	6.54143497238104	6.21786803981832	5.97412489135525	6.38836911116025	6.40179057067888	6.32901932006014	6.07893377698066	6.42650017045854	0.0248755628033595	0.918260082327177	0.969889091028279
Merged-chr11-20500745-4	chr11	20500647	20500847	+	940.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16D1|LTR|ERVL	-42506.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	4.17167934782196	4.11208892057489	3.93329683570118	3.91874929389779	4.20013060204384	3.82443653456541	4.27666711076765	4.12541270893945	0.240188631066805	0.571340750691349	0.810544780927183
Merged-chr2-148572353-2	chr2	148572253	148572453	+	797.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-100262.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	3.0622451586132	3.20408381400713	2.78927606513388	2.83507524394446	3.09759423082703	3.17398356120963	3.32510098871718	3.23422097505436	0.917274246341089	0.117241261659651	0.378687102556896
Merged-chr1-74854883-2	chr1	74854783	74854983	+	836.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009872)	promoter-TSS (NM_009872)	-146.0	NM_009872	12570.0	Mm.153833	NM_009872	ENSMUSG00000090071	Cdk5r2	B230310J22Rik|p39	cyclin-dependent kinase 5, regulatory subunit 2 (p39)	protein-coding	3.65152662675228	3.53287382019803	3.28902513352203	2.99591275248558	3.21709713722591	3.67812282348598	3.01674497060148	3.0949980113564	-0.39689327589269	0.521545360089129	0.781462832085722
Merged-chr9-106230495-4	chr9	106230447	106230647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7949.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	6.804150727285	7.17960624994212	6.31490040180791	6.54524910275561	6.70092696906875	6.80787079243931	6.46709997714887	6.40642873281943	-0.205458243456301	0.42769383681895	0.71887209364609
Merged-chr6-34346787-4	chr6	34346682	34346882	+	895.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7364.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	4.28872009539959	4.35879748630675	4.24517444110858	4.32775803774287	4.147237062792	4.22760764230081	4.50461739703072	3.94057638022278	-0.218327308949583	0.589537166217469	0.820464677958613
Merged-chr5-123945455-3	chr5	123945352	123945552	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134767, intron 5 of 12)	intron (NM_001134767, intron 5 of 12)	14763.0	NM_001134767	208908.0	Mm.243679	NM_001134767	ENSMUSG00000061882	Ccdc62	AI661708|G1-485-3|Gm150|repro29	coiled-coil domain containing 62	protein-coding	5.11625190871124	4.99184152924954	5.06612652057804	5.04131683525669	3.42426035808929	3.55571732518328	3.49378099790239	3.50398293343562	-5.49364474722619	6.66941763473531e-12	6.18934130147098e-10
Merged-chr2-157371611-7	chr2	157371458	157371658	+	899.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026968, intron 1 of 2)	ID_B1|SINE|B4	3964.0	NM_026968	69161.0	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	3.53090858732915	3.55336707334202	3.64246663595434	3.83704011780139	3.37242904988011	3.52534398432307	3.62777491322887	4.0458903603038	0.0291064898537774	0.955308849525697	0.984075265351039
Merged-chr3-15194562-4	chr3	15194471	15194671	+	927.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137731.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	4.8014155800587	4.73298262757439	4.80219525044046	5.29601261008866	5.07070631787307	4.7662374568081	5.72208554749053	4.91485678841142	0.436187230961387	0.265935209266265	0.577640399629194
Merged-chr5-5213623-4	chr5	5213526	5213726	+	909.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 4 of 14)	intron (NM_011074, intron 4 of 14)	52442.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	4.20553458235266	4.33418325777598	4.56596672214556	4.65041194701632	4.65674685476899	4.33351343662135	4.75838134456038	4.56299809917748	0.280665563887892	0.464442455507191	0.745452017408793
Merged-chr2-32535215-4	chr2	32535102	32535302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153560)	promoter-TSS (NM_153560)	-157.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	7.86532662589027	7.58035953540141	7.33705321080593	7.52783587016165	7.74286367332864	7.75898892551109	7.7256271438259	7.56755712353768	0.148739743094834	0.422214706153292	0.714573568473386
Merged-chr7-31132303-4	chr7	31132221	31132421	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153431, intron 18 of 18)	intron (NR_153431, intron 18 of 18)	-5298.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	4.9960991694792	4.97510922442477	5.4837294477414	5.10779648404732	4.07943381796137	4.33245693702206	4.12412302085219	4.54833491964382	-1.93517870510758	7.83052093353967e-07	2.79522893444544e-05
Merged-chr8-25980422-4	chr8	25980304	25980504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029037)	TTS (NM_029037)	-3660.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	7.58075133023512	7.83290428573282	7.38265160018065	7.69932545396322	7.66385489185043	7.49693513922532	7.50024626354113	7.3979405923744	-0.154790998326535	0.404992981018895	0.702044175820993
Merged-chr4-86668342-3	chr4	86668239	86668439	+	843.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007408, intron 3 of 7)	intron (NM_007408, intron 3 of 7)	1720.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	3.1650417071483	3.38609736690431	3.28224398631607	3.12702773912207	3.05839435533134	3.39545156868835	3.15420430274983	3.2234629119942	-0.119815146408949	0.828089313019515	0.934048198831045
Merged-chr17-10874486-6	chr17	10874442	10874642	+	828.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	34183.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	3.465315787917	3.43511366747202	3.40813812943448	3.14562022412751	3.32709062260027	3.52451657221921	3.65740440994147	3.8074808331749	0.765386872932319	0.141361372088729	0.418324579216881
Merged-chr2-143915425-4	chr2	143915313	143915513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019771)	promoter-TSS (NM_019771)	82.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	7.60298223924843	7.29765611306279	7.47169124802569	7.55277055518408	7.42987997656984	7.39116300503688	7.41602219061459	7.20868253533721	-0.161950643003793	0.370204113299847	0.674357518313601
Merged-chr6-85154151-4	chr6	85154052	85154252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16388.0	NM_011467	20751.0	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|Gm10328	sepiapterin reductase	protein-coding	5.36684117370806	5.25105613503839	5.30717497177804	5.27374231628388	5.27932620514045	5.45134845959145	5.53138430207071	5.69924651549849	0.343802313130729	0.223940554083406	0.53210045864795
Merged-chr11-82032813-4	chr11	82032719	82032919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2758.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	5.25760801394322	5.40493452032595	5.1568398407517	5.49276003295822	5.46020932960793	5.33491708647257	5.87623135690064	5.43663994632561	0.340963460381345	0.252187804947146	0.563542923002808
Merged-chr7-45123936-2	chr7	45123836	45124036	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_000004)	promoter-TSS (NR_000004)	453.0	NM_013725	27207.0	Mm.196538	NM_013725	ENSMUSG00000003429	Rps11	-	ribosomal protein S11	protein-coding	3.28641916483469	3.7193587350751	3.62546572180413	3.14876994043399	3.42414165486449	3.46481749246504	3.39679267446923	3.71872186650909	0.155289595799113	0.775318799735229	0.912320643528997
Merged-chr10-95843401-4	chr10	95843309	95843509	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97254.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	5.49673822751763	5.53986712427531	4.9944864440183	5.20781266241477	5.44053595786016	5.41412249493335	5.30493735620102	5.13651783567592	0.0171501612163138	0.955272913594985	0.984075265351039
Merged-chr4-133132257-4	chr4	133132170	133132370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	1637.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	5.87393942731984	6.17179136010169	5.89766070688291	5.92743551697023	5.91810673991009	5.85369436784065	5.59424866010273	5.56146688467525	-0.362617557841065	0.163412687777451	0.453064888721415
Merged-chr6-42645417-3	chr6	42645333	42645533	+	885.822205	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146174)	promoter-TSS (NM_146174)	-392.0	NM_146174	232748.0	Mm.279659	NM_146174	ENSMUSG00000029851	Tcaf2	Fam115c	TRPM8 channel-associated factor 2	protein-coding	3.93207086788797	3.68989144491697	3.88668479645364	4.03092486148772	3.70931962133795	3.7451528638909	3.49632734024568	3.73567884393064	-0.66171197712913	0.157963966312267	0.444802482717813
Merged-chr5-64385110-4	chr5	64385024	64385224	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	82818.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	4.65565794892005	4.44416441299503	4.09451263846205	4.18911176196201	4.18818141977188	4.05740561591574	4.1263279809496	4.18914314620751	-0.527374414693116	0.205086195709303	0.508670650372587
Merged-chr5-44127694-3	chr5	44127578	44127778	+	749.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25942.0	NM_001163577	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	3.5788697813857	3.55376933348042	3.52077298475523	3.95418613805074	3.95335965042594	3.57425641230263	3.95281326362515	3.57747353784467	0.303950518807126	0.551545833438252	0.798992182320166
Merged-chr1-131659728-4	chr1	131659624	131659824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007799, intron 1 of 9)	intron (NM_007799, intron 1 of 9)	21410.0	NM_007799	13034.0	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding	7.16029952401593	7.31802543150997	7.21933447838533	7.46464434744815	7.59663286027884	7.4518204152519	7.49394437844525	7.80946928061221	0.387369174279266	0.0396788003792677	0.200771021414657
Merged-chr10-83448796-1	chr10	83448696	83448896	+	603.0	f0_balb.idr	Intergenic	Intergenic	85344.0	NM_153543	216188.0	Mm.263138	NM_153543	ENSMUSG00000020256	Aldh1l2	D330038I09Rik|mtFDH	aldehyde dehydrogenase 1 family, member L2	protein-coding	2.64166543981624	2.90112258643728	2.80814961591138	2.84987902301378	2.2624871730376	2.31995856532232	2.37262566051625	2.37703293188641	-3.6911711880662	0.000238318031342317	0.00419570594927401
Merged-chr12-9002209-4	chr12	9002104	9002304	+	957.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172470, intron 12 of 27)	intron (NM_172470, intron 12 of 27)	-27793.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	4.8896912623316	5.06248303518003	4.65619219604202	4.81302257093991	5.20990369324756	4.7467102239599	5.00115128793475	4.73604404220729	0.178064259791458	0.604075288910177	0.828350269166784
Merged-chr10-128546485-4	chr10	128546374	128546574	+	954.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134003, intron 2 of 2)	intron (NM_134003, intron 2 of 2)	1270.0	NM_134003	103284.0	Mm.68289	NM_134003	ENSMUSG00000039810	Zc3h10	AI790326	zinc finger CCCH type containing 10	protein-coding	4.460715133759	4.44299464767219	4.03004326114092	4.12904493410223	4.5811905167716	4.41538314767831	4.51903486333556	4.61174021859151	0.619152264243237	0.105837440862572	0.358375110753866
Merged-chr11-68443490-4	chr11	68443419	68443619	+	990.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	11394.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	5.75681130338175	6.71104617669636	5.70685307370851	5.63622648416435	5.57069742855797	5.93471458664446	5.2535088712838	5.80268016805955	-0.604118851374813	0.0887130125376124	0.325087542170398
Merged-chr8-111536045-2	chr8	111535945	111536145	+	733.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168621)	promoter-TSS (NM_001168621)	-595.0	NM_001168622	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	3.62238875966281	3.53320763817725	3.45006501160094	3.3017936469826	3.71163116468203	3.56740784193055	4.160122188991	3.56578680035708	0.942074149409607	0.0617703860137264	0.262954452354676
Merged-chr13-49248152-4	chr13	49248088	49248288	+	765.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001360772, exon 1 of 4)	5' UTR (NM_001360772, exon 1 of 4)	106.0	NM_001360772	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	4.11136400007424	3.98151501018046	4.15438858701002	3.92484582291086	4.01164746367808	3.82566841671338	4.00485522279372	3.81889025942244	-0.312347636680008	0.469119313851242	0.748095998770725
Merged-chr5-63969828-3	chr5	63969749	63969949	+	750.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145923)	promoter-TSS (NM_145923)	-952.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	3.72857437890351	3.04329570796228	2.92964374301595	2.80667786879492	3.29899472875103	3.3272215424276	3.6234655389003	3.5436561730779	0.958588358074101	0.134825468227004	0.408733586780799
Merged-chr10-128549268-4	chr10	128549171	128549371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018860)	promoter-TSS (NM_018860)	-103.0	NM_018860	67945.0	Mm.290786	NM_018860	ENSMUSG00000093674	Rpl41	1810055P16Rik|2210411K19Rik	ribosomal protein L41	protein-coding	8.09599761290499	8.19313952565233	7.93958798475418	7.63385001276948	7.80749948158556	8.15844941235706	7.79951380977255	7.6786777307169	-0.135327355347554	0.50213820864053	0.769457185302407
Merged-chr10-62507198-3	chr10	62507082	62507282	+	937.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	ID_B1|SINE|B4	575.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	4.52747378284433	4.87187393554993	5.02658418665366	4.18592525789142	4.80522018899131	4.82656383685523	4.50755989114845	4.52530337845203	-0.00855457344409002	0.983186307061505	0.99395664486631
Merged-chr19-4204140-4	chr19	4204043	4204243	+	909.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2540.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	4.52878135343396	4.43292664848744	4.1296554669739	4.27918734944896	4.55286282392261	4.30717342312929	4.25856859118901	4.56405307379651	0.204089124013077	0.597095728480911	0.825079630710775
Merged-chr13-112016197-2	chr13	112016097	112016297	+	969.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3|LINE|L1	148261.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	3.32053900342736	2.98228278570183	3.37822282005712	3.38107006798944	3.21514266149247	3.43511883738614	3.56870811405461	3.53397441580524	0.563935903950755	0.305609123829166	0.617981585938529
Merged-chr4-102515165-4	chr4	102515050	102515250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-54910.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.28723833105701	5.50375921193663	4.28784538734147	5.95511895054873	6.17621496381904	6.27522243115728	6.44629239203574	6.03838229055849	1.7545491388046	0.243133879200792	0.554112012923705
Merged-chr9-35124456-4	chr9	35124340	35124540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027030)	TTS (NM_027030)	-7576.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	8.21102457965842	8.56246695651016	8.04964898926528	7.54867710895292	7.80967418982151	8.11996438185821	7.75546960261571	7.336638356181	-0.459234964774898	0.0690540541074034	0.280884537248464
Merged-chr10-127655468-4	chr10	127655379	127655579	+	687.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009284, exon 13 of 22)	exon (NM_009284, exon 13 of 22)	11224.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	3.69964795053905	3.55957526817756	3.35274911647083	3.70291890372486	3.59960175561297	3.71115404204178	3.73408597270822	3.84175895945227	0.387436132874849	0.422168968412285	0.714530139165807
Merged-chr1-164275633-4	chr1	164275532	164275732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029115)	promoter-TSS (NM_029115)	34.0	NM_029115	74895.0	Mm.167258	NM_029115	ENSMUSG00000026578	Ccdc181	4930455F23Rik|AI427889	coiled-coil domain containing 181	protein-coding	6.92021118533641	6.95202487924594	7.22663885104057	7.3275966170537	7.24616328549948	7.1792226186864	7.66870394528252	6.93026014332391	0.215832445474777	0.345286828983604	0.653596021599977
Merged-chr19-45436249-3	chr19	45436157	45436357	+	849.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360127, intron 2 of 13)	intron (NM_001360127, intron 2 of 13)	72523.0	NM_001360126	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	3.51255748063146	3.38691594779136	3.45611217839493	3.31898050316635	3.60767201828508	3.73784411220508	3.60478172218215	3.66794301778448	0.793564549715872	0.0972515845670701	0.341688658763981
Merged-chr17-70833655-4	chr17	70833592	70833792	+	875.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13085.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	4.02476305094326	4.31821519615392	4.21367175826097	3.86941792295815	4.05358575235637	4.24845118792566	4.00855180056873	4.33580850589405	0.147519137445053	0.728671643456979	0.892191512842823
Merged-chr11-29547831-4	chr11	29547721	29547921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028504)	promoter-TSS (NM_028504)	-129.0	NM_028504	73324.0	Mm.69388	NM_028504	ENSMUSG00000020461	Clhc1	1700034F02Rik	clathrin heavy chain linker domain containing 1	protein-coding	6.51351900792163	6.81293509025407	7.55759775095006	6.40158197298431	6.76823466086683	6.77701517643262	6.73292288312712	6.47455750997075	-0.290422285481179	0.320455719240468	0.632321061176427
Merged-chr9-57421416-4	chr9	57421300	57421500	+	979.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152145, intron 3 of 6)	intron (NR_152145, intron 3 of 6)	18336.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	5.51113009837802	5.38593756361378	5.03168731785953	5.11428491057604	5.12127878787594	5.43790039011964	5.14457823498318	5.16634545822562	-0.089391061781045	0.772676692185584	0.911006182986495
Merged-chr10-117323963-4	chr10	117323850	117324050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31082.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	5.92443876706094	5.62633537237515	5.70981071576247	5.7767402764546	6.04759994483428	5.96093298478868	6.13276456886147	5.73154776223824	0.351643542226736	0.163937119233064	0.453847777600649
Merged-chr2-127788910-4	chr2	127788809	127789009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016902)	promoter-TSS (NM_016902)	-18.0	NM_001355429	53885.0	Mm.210766	NM_016902	ENSMUSG00000027378	Nphp1	-	nephronophthisis 1 (juvenile) homolog (human)	protein-coding	5.6492647090062	5.58232752263507	5.16247821182626	5.48465330104771	5.62738614661499	5.84896967454885	5.69494242487823	5.74363993281687	0.407676952770118	0.134552320810568	0.408274347471029
Merged-chr2-6469369-4	chr2	6469247	6469447	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116611.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	4.90395116752484	4.72058805287069	4.41865240196213	5.35320748368417	4.87258318478985	5.21802554900131	5.43521089987338	4.97325125295865	0.42797529625958	0.278862464177643	0.591065193785375
Merged-chr6-83053427-2	chr6	83053327	83053527	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013586)	TTS (NM_013586)	-1094.0	NM_007517	11993.0	Mm.386752	NM_007517	ENSMUSG00000068328	Aup1	AA589454	ancient ubiquitous protein 1	protein-coding	3.55455303565346	4.14254611556824	3.36812550852617	3.53150811555963	3.69860941852787	3.61241832871598	3.89125991703296	3.60995413435568	0.0696066427273078	0.89413412415143	0.960481560907683
Merged-chr2-27540298-4	chr2	27540191	27540391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	25144.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	8.30707232963011	8.60847203175529	8.20418469026729	8.10670150917468	8.46136586452779	8.50276653606335	8.25273509040643	8.00308015785951	0.00417865707315383	0.982702002242218	0.99384415989541
Merged-chr14-54617993-4	chr14	54617861	54618061	+	967.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011186)	promoter-TSS (NM_011186)	34.0	NM_011186	19173.0	Mm.8911	NM_011186	ENSMUSG00000022193	Psmb5	-	proteasome (prosome, macropain) subunit, beta type 5	protein-coding	4.89432403327206	4.88209088143457	5.20700738648853	3.98672305613423	5.17453676231219	4.99799098074487	4.64157909405057	4.85598722127342	0.247403434408113	0.567218624459148	0.808159943760313
Merged-chr4-6384731-4	chr4	6384647	6384847	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016807, intron 4 of 8)	intron (NM_016807, intron 4 of 8)	19067.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	5.64809260185847	5.18943616483006	5.74131738816194	5.63905708063922	5.36595963349292	5.30066282255468	5.32697606442821	5.22277005192025	-0.463528606346942	0.113472243333893	0.372473895607002
Merged-chr3-129643332-4	chr3	129643171	129643371	+	878.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81815.0	NM_001310737	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	3.32151306864631	3.42588983279601	3.66565627934121	3.27635735198295	2.93588785139294	3.31725564419017	3.19249068834787	3.07317166163853	-1.13117646545289	0.0508828714204298	0.233954521008166
Merged-chr6-136808847-4	chr6	136808727	136808927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177688, exon 1 of 1)	3' UTR (NM_177688, exon 1 of 1)	579.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	5.06229079751058	5.69707563528925	5.10009673074045	5.09925357371142	5.41694243445326	5.3145681281498	5.83965038007891	5.55190068300097	0.487981891292367	0.130759280814172	0.402509138266066
Merged-chr2-156864505-4	chr2	156864425	156864625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026124, intron 1 of 3)	B4A|SINE|B4	1403.0	NM_026124	67388.0	Mm.29264	NM_026124	ENSMUSG00000027637	1110008F13Rik	AI316789	RIKEN cDNA 1110008F13 gene	protein-coding	6.2392298363068	6.12058885932481	5.97829728990821	5.82273788633637	6.30877772194135	6.10902972122426	6.17160693631361	5.70036175812665	0.0969136094675845	0.712713334142934	0.884988964481272
Merged-chr11-70516519-3	chr11	70516418	70516618	+	925.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1902.0	NM_001013607	327956.0	Mm.244514	NM_001013607	ENSMUSG00000020830	Vmo1	Gm741	vitelline membrane outer layer 1 homolog (chicken)	protein-coding	3.30859867155037	3.50483669093572	3.05560536734073	3.41653166766816	3.33135712042097	3.29894866171858	3.29680569701151	3.46913260378455	0.0409043600877395	0.939717284854584	0.978282898493037
Merged-chr5-117357023-8	chr5	117356919	117357119	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021539)	promoter-TSS (NM_021539)	-286.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	3.97215092437896	4.22211422966182	4.56003263754224	3.678374116041	4.2177690567986	4.20086919660192	4.10513050470767	4.12069400721042	0.0630867224611645	0.891634885090191	0.959441830142612
Merged-chr8-122550979-2	chr8	122550879	122551079	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357349, exon 1 of 51)	exon (NM_001357349, exon 1 of 51)	350.0	NM_001037298	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	4.45598457035036	4.47603628279632	4.96460584949834	4.78937832718684	4.8268408540002	4.72646420145923	4.84053145205472	5.11248194769275	0.389764733572076	0.273642971723252	0.585318180253308
Merged-chr8-14931492-3	chr8	14931449	14931649	+	601.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037736, intron 4 of 27)	intron (NM_001037736, intron 4 of 27)	19886.0	NM_001037736	234094.0	Mm.240298	NM_172751	ENSMUSG00000071176	Arhgef10	6430549H08Rik|mKIAA0294	Rho guanine nucleotide exchange factor (GEF) 10	protein-coding	3.67229963761477	3.65224093782442	3.81237296658268	3.45864991264607	3.43892799860267	3.51464231403856	3.26214039776585	3.51408098740538	-0.698993865870684	0.171544040028596	0.46488750928509
Merged-chr12-33315411-4	chr12	33315322	33315522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	12907.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	7.30847166559435	6.95135107923912	6.98285807043853	7.43430856319765	6.79261989171386	6.68303384397719	7.5470990985204	6.85639061326157	-0.238452544268561	0.354481551193286	0.66114238694363
Merged-chr18-40439862-4	chr18	40439756	40439956	+	898.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026135, intron 1 of 1)	intron (NM_026135, intron 1 of 1)	181495.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	4.22116665809394	4.22172532220989	4.61401354814449	4.76449911616206	5.74688996851538	5.7098425024543	5.84416595507809	5.71276593659915	2.31958696165874	5.03075346366907e-10	3.40707897992865e-08
Merged-chr7-113556391-4	chr7	113556278	113556478	+	893.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126544, intron 1 of 5)	intron (NR_126544, intron 1 of 5)	8609.0	NR_126544	69295.0	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	4.31826517539674	4.63004222299506	4.31892034471824	4.30965233248257	4.59975129436286	4.44636886312247	4.29997612607017	4.07433951225302	-0.0495934518298612	0.901368956706561	0.963342914941175
Merged-chr2-132096027-4	chr2	132095924	132096124	+	946.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355431, intron 2 of 6)	Lx8|LINE|L1	49084.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	5.09823891090679	4.83743542655082	4.50026203092042	4.99658073374832	4.79277623455045	4.77006900484675	4.69705223094155	5.12500565125857	-0.058082669389869	0.869594125130976	0.951054729822361
Merged-chr13-40944260-4	chr13	40944172	40944372	+	989.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133219, intron 1 of 2)	RMER10A|LTR|ERVL	26638.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	4.8063826943755	5.53953874207232	5.60946316300843	5.73789401719942	4.94099226023404	4.90265353781597	4.82654025919668	5.14126341723756	-0.971207779680616	0.00555868906752709	0.0513513211080481
Merged-chr2-155071230-3	chr2	155071108	155071308	+	689.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016661, intron 1 of 9)	L2|LINE|L2	3289.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	2.80411364783227	2.99443291198084	2.97740445156701	2.5775910148327	2.91592673923779	2.70998059862122	2.59776424807979	2.53036001472146	-0.672110632305952	0.336864318697716	0.646768951543839
Merged-chr8-13874981-4	chr8	13874876	13875076	+	882.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181854, intron 1 of 1)	PB1|SINE|Alu	5335.0	NM_181854	101994.0	Mm.289346	NM_181854	ENSMUSG00000047710	Champ1	AA675043|AI116001|D8Ertd457e|D8Ertd569e|Zfp828|Znf828|mKIAA1802	chromosome alignment maintaining phosphoprotein 1	protein-coding	4.43473692579626	4.36804481705173	3.93929843997368	4.31125759225703	3.71782780810038	4.06297378369717	4.17015399857558	4.31533058835523	-0.512772255508819	0.249232978098812	0.560328612484111
Merged-chr17-84698921-3	chr17	84698809	84699009	+	815.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104382, exon 13 of 14)	non-coding (NR_104382, exon 13 of 14)	15788.0	NM_026180	67470.0	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP binding cassette subfamily G member 8	protein-coding	3.08291224199204	3.09529734595716	3.26035058731822	3.31912368780297	3.17350229380754	3.19225260965662	3.13402111852436	3.31246798010204	0.00798646114283403	0.988411300164376	0.995445808115911
Merged-chr3-103172854-4	chr3	103172770	103172970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356330, intron 2 of 5)	RCHARR1|DNA|hAT-Charlie	1215.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	6.31796374032642	6.52060971231352	6.49703459800101	6.44214239228544	6.80043936173011	6.45740105483621	6.51242110199307	6.35219219555434	0.155823836043828	0.48442671474964	0.758525197917074
Merged-chr1-87849499-4	chr1	87849375	87849575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3812.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	6.53210666609718	6.81715795393687	6.76509006035891	6.91521490490191	6.61153922999165	6.69335107974166	6.91332195967027	6.36595578684611	-0.164396843686423	0.461909130179481	0.743501704400988
Merged-chr7-105744386-4	chr7	105744276	105744476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020024)	promoter-TSS (NM_020024)	-38.0	NM_020024	24075.0	Mm.274846	NM_020024	ENSMUSG00000043866	Taf10	30kDa|AU041226|TAFII30|Taf2h	TATA-box binding protein associated factor 10	protein-coding	7.32875076408706	7.14605964070493	6.75379226820761	7.32905476718015	7.29193381960062	7.36908929289883	7.52981736772347	6.98038054681421	0.189764618304394	0.390720818112773	0.690674818832488
Merged-chr10-111178102-6	chr10	111177986	111178186	+	832.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003717, intron 1 of 22)	intron (NM_001003717, intron 1 of 22)	13284.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	4.36575611079986	3.77533406663914	5.03452697817511	4.62938372752952	3.84457732107891	3.8590415529526	3.90526217254146	4.48358630314142	-1.14199673490221	0.0297785696125421	0.166420968940793
Merged-chr3-96500489-4	chr3	96500374	96500574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24711.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	6.01150029450382	6.44965065339641	5.69326016531659	6.07494867017387	6.75802445465926	6.60714590242417	6.23603808821887	6.90057794038627	0.829375602821871	0.00208112494626155	0.0241060174295971
Merged-chr4-53232591-1	chr4	53232491	53232691	+	742.0	f0_balb.idr	Intergenic	Intergenic	-13605.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	3.45244980675715	3.47784176396534	3.56354561826891	3.88951840140289	3.37018606948434	3.73263168743175	3.25697521488082	3.50750223851491	-0.479537942074445	0.369714212424479	0.673902379671242
Merged-chr9-60813670-1	chr9	60813570	60813770	+	671.5	f0_balb.idr	intron (NM_001357408, intron 1 of 19)	intron (NM_001357408, intron 1 of 19)	19228.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	3.25449308524998	2.88160601294372	3.1518748975716	2.99804513623965	2.81235694086544	2.88782803676162	2.8416477766929	3.03794484959287	-0.776092057356128	0.205565043214302	0.509248774555215
Merged-chr5-146299652-4	chr5	146299553	146299753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359990, intron 11 of 12)	intron (NM_001359990, intron 11 of 12)	68403.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	5.21601008978275	5.03524636867151	5.01454538389999	5.29580364454148	4.91181199257584	5.35931886372991	5.30915992152575	5.49160270419693	0.218391871521262	0.493087056798134	0.764001251274968
Merged-chr17-32114238-2	chr17	32114138	32114338	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22815.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	3.26825447502026	3.04448427115902	3.64218060767782	3.19956572435137	2.87546206008532	2.85017459755246	3.02047113396609	3.15344335096201	-1.31889488119032	0.0351724453182852	0.185881934413816
Merged-chr12-12176809-4	chr12	12176697	12176897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85342.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	5.50040699967898	5.69147233841543	5.85087451596273	6.02777747906486	5.74201719315025	5.35713954845647	5.25669177365604	5.60751945329617	-0.46923815133947	0.11089586310276	0.367873264659147
Merged-chr18-56466632-4	chr18	56466538	56466738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	34506.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	5.86680378227178	5.63376184971297	5.74784940791566	6.14283470247947	6.13291374323996	5.64657837008682	5.76780912450694	5.71838316223711	-0.0549070070920247	0.845562758645955	0.94155619271138
Merged-chr8-68191950-4	chr8	68191838	68192038	+	883.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84590.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	4.30171196993199	4.0381624340374	4.10526259103021	3.94040146349074	4.57548477256352	4.38545479059287	4.93894803168321	4.51008918182572	1.25277263879648	0.00143089656041023	0.0179692636332816
Merged-chr11-97127235-4	chr11	97127105	97127305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11874.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	6.04976241772512	5.9131289455644	5.70454130365375	5.14428918084503	5.55210439626153	5.90392454096637	5.36902517993303	5.70047745779558	-0.151106881790349	0.64308932697726	0.849459897971419
Merged-chr15-102247150-4	chr15	102247040	102247240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042727)	promoter-TSS (NM_001042727)	-640.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	6.95903514685533	7.11217921409728	6.45180031643264	6.35580265055007	7.27885992022621	7.35675213738146	7.0566700037776	6.65629538474454	0.504279092867616	0.0575582000753061	0.251793689580248
Merged-chr8-18846928-4	chr8	18846835	18847035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026792, intron 1 of 7)	CpG	656.0	NM_026792	52123.0	Mm.24117	NM_026792	ENSMUSG00000031467	Agpat5	1110013A05Rik|D8Ertd319e	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	protein-coding	6.96044179543996	6.75434171669163	7.29108889654312	7.23202190541546	6.93058343596941	6.94288906831236	7.06131127219181	7.14901013750012	-0.0838989930952721	0.690931769801944	0.874233806014945
Merged-chr17-70849161-6	chr17	70849098	70849298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164074, intron 1 of 2)	intron (NM_001164074, intron 1 of 2)	592.0	NM_001164076	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	6.77338553405766	7.53920766516779	7.23119316490828	6.52103915171287	7.49948361050341	7.51321033443817	7.60875963271412	7.21513807731026	0.534833285885733	0.0388137441653945	0.197917006658687
Merged-chr18-50016920-4	chr18	50016740	50016940	+	908.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	-14144.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	3.77939583102787	3.69197719116954	4.07271898811723	4.08761244370924	3.99871923990766	3.89956013866964	3.70998770290329	4.112938465931	0.0334440009558274	0.941840699200422	0.97898049638905
Merged-chr5-66141700-1	chr5	66141600	66141800	+	645.0	f0_balb.idr	intron (NM_001127382, intron 2 of 7)	RMER15|LTR|ERVL	9278.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	2.7253282300448	2.99734591988652	2.84328018757403	2.90502592860225	2.41266430453174	2.47724382385982	2.44718035541271	2.52551488800722	-2.40831405036302	0.00180286064414022	0.0215635211358617
Merged-chr1-127976254-2	chr1	127976154	127976354	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027678, exon 13 of 21)	exon (NM_027678, exon 13 of 21)	107481.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	3.69501734019467	3.25933867542614	3.54695445288336	3.08437298378926	3.26479249275644	3.8635032738409	3.36603377600341	3.37718949420067	0.250230625716684	0.661426880875072	0.859386554615034
Merged-chr10-87025078-4	chr10	87024972	87025172	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17130.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	5.17311128142235	5.40025674688788	5.38982388214525	5.04515100686679	5.42833351723508	5.01290251370984	5.70507640576582	5.38604793806895	0.288086729828427	0.357036503939432	0.663316563307698
Merged-chr5-127611327-4	chr5	127611230	127611430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 1 of 7)	intron (NM_133895, intron 1 of 7)	6062.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	5.90883888974573	5.93961398548676	5.8864292061507	6.37181173434504	5.97931301838062	6.15280637368163	5.92516459669829	5.80925423335796	-0.148848260035621	0.573213141616017	0.81172883588824
Merged-chr1-52119391-4	chr1	52119286	52119486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357627)	promoter-TSS (NM_001357627)	-52.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	8.13948568942048	8.43397842749374	8.54705146732473	8.53283878907801	8.3484980715923	8.38093494575456	8.30790096933173	8.16077217634337	-0.158214251446298	0.34351119695866	0.652229606495958
Merged-chr1-60580058-4	chr1	60579959	60580159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1b|LTR|Gypsy	-13294.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	6.78738437325245	6.87024865360776	7.44289047764555	7.39253110070498	6.83796885532834	6.57933548586277	6.66382761221108	6.78374788461783	-0.613330658792088	0.0093720341450205	0.0753946675416381
Merged-chr13-111805897-4	chr13	111805819	111806019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	3074.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	5.87728412681522	5.53374463436069	5.73021985562774	6.23989422899888	5.98149172779979	5.9326880297377	6.13662331394591	5.89719940604525	0.151826046169211	0.587448490990466	0.819207635676705
Merged-chr7-129995704-4	chr7	129995601	129995801	+	974.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	33536.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	4.96461296891261	5.21381995189636	5.27246912246718	5.40331125989659	5.41449856541143	4.98311861167785	5.46650462979146	5.32799641616535	0.145895671433267	0.638099925003073	0.847040716325261
Merged-chr7-127260813-4	chr7	127260706	127260906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023203)	promoter-TSS (NM_023203)	-139.0	NM_023203	66422.0	Mm.29898	NM_023203	ENSMUSG00000042462	Dctpp1	2410015N17Rik|AI854235|RS21-C6	dCTP pyrophosphatase 1	protein-coding	8.65848440770978	8.83501810889031	8.61917249550055	8.44537945205809	8.74656816062708	8.93620208096638	8.64669545282022	8.71082002103584	0.150917878428622	0.352606677716413	0.659679630621423
Merged-chr15-98139903-2	chr15	98139803	98140003	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170711, intron 3 of 3)	ORR1B1|LTR|ERVL-MaLR	5799.0	NM_030121	78541.0	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	2.61038306429034	2.52828116336497	2.47255354060761	2.34768950619412	2.63459582358106	2.71737327744938	2.78231831692556	2.73422856062675	1.22026660794885	0.0651382947621797	0.271536086844931
Merged-chr7-19790133-3	chr7	19790041	19790241	+	824.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161844, intron 5 of 10)	intron (NM_001161844, intron 5 of 10)	6668.0	NM_001161844	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	3.27970280762727	3.31103789041568	3.49332686667654	3.26084988819466	3.2746724615528	3.39265661906262	3.08393218642477	3.2784194543643	-0.268008949662682	0.617411122376748	0.835534817449625
Merged-chr19-4306409-4	chr19	4306299	4306499	+	935.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130863)	promoter-TSS (NM_130863)	-177.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	5.04963468632995	5.17107121546432	4.45496767458293	4.2127487593992	4.70191735464256	5.01975981012781	5.3064821215778	5.0469771214535	0.506107879092462	0.220647819959669	0.528626428034644
Merged-chr10-98937930-3	chr10	98937819	98938019	+	732.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	22767.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	4.26029106498894	4.07530072367433	3.95941464549584	4.26626058711651	3.89875783778027	3.54389903640123	3.78966318333691	3.85604249557192	-1.02180034487586	0.0255493741734485	0.150743147996086
Merged-chr16-50779586-4	chr16	50779480	50779680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3829.0	NR_131006	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	6.12003361501641	6.45211916380854	5.98281743573203	6.28304032394775	6.43088682604023	6.53569418718569	6.86089330407413	6.44230783446747	0.51195066544386	0.0325420901775192	0.17665599731129
Merged-chr5-3381888-4	chr5	3381737	3381937	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	37944.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	3.8471788669428	3.60542655446363	3.79552298223203	3.61077604489325	3.91831911534201	3.91664208482737	4.1825551424289	4.03511958438449	0.874530664241949	0.0467161520545214	0.222225921280877
Merged-chr9-77911676-4	chr9	77911571	77911771	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5694.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	6.07932298063569	5.82624627126217	5.36642299069743	5.15312981137072	6.02028507193128	6.23478613328687	6.00963231856432	5.97461036737957	0.675565992802292	0.0280366068215783	0.160226225367573
Merged-chr9-95514487-1	chr9	95514387	95514587	+	601.0	f0_c57.idr	Intergenic	MERVL-int|LTR|ERVL	-2491.0	NM_001357974	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	3.03089589876302	3.05638737930831	3.28094385246011	2.82378095543067	3.63231615007844	3.45252696875918	3.21047984002537	3.27911361122392	1.37487666719812	0.0160789603684847	0.11002655343822
Merged-chr9-21616585-1	chr9	21616485	21616685	+	1000.0	f0_c57.idr	intron (NM_001357764, intron 1 of 34)	CpG	416.0	NM_001174078	20586.0	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	BAF190A|Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	5.68407445898458	5.88516072249479	5.55209410866556	5.66029836353351	5.70513214851121	5.85929088009221	5.52431211255359	5.57591240340948	-0.0486390331110311	0.854165501101094	0.945075498668337
Merged-chr11-118360784-3	chr11	118360688	118360888	+	797.488892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5377.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	3.65549961824256	3.59650605846658	3.7500293554931	3.6945804012807	3.48506475189172	3.15423351252879	3.43130778587821	3.38347217968826	-1.01028152144775	0.0520698750043299	0.237572623216372
Merged-chr14-25660222-4	chr14	25660139	25660339	+	872.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 22 of 23)	intron (NM_183208, intron 22 of 23)	-33931.0	NM_134084	105675.0	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	4.37646558433253	4.7942696421435	4.91935133052033	4.66295810182373	4.23791831775189	4.25725877420819	4.16575121181056	4.37441233328168	-1.02527881861725	0.00813328593460638	0.0679482581618952
Merged-chr5-90696286-4	chr5	90696185	90696385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55758.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	7.59512367736396	7.45354531292054	8.38452681717196	8.05841285722513	7.25887708522299	7.32553565327812	7.56776045012808	7.37080003249293	-0.715752993604498	0.00257409799991767	0.0283515809044298
Merged-chr2-165329955-4	chr2	165329878	165330078	+	927.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3499.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	4.7859945028835	4.61179669520805	5.14830294261346	5.38479943895272	4.66672121297399	4.5219637621908	4.72588232048523	4.82104499980115	-0.705833563778894	0.0604115421542665	0.259632481523882
Merged-chr13-104109643-4	chr13	104109551	104109751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029447)	promoter-TSS (NM_029447)	-37.0	NM_029447	75805.0	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	8.64117407908937	8.7658159211498	8.76348137990377	8.7730278182013	8.80817687610108	8.65022849538203	8.8853726065816	8.68154401891049	0.0288735207686994	0.843580398846494	0.940656589135439
Merged-chr18-46153820-4	chr18	46153715	46153915	+	904.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	45003.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	4.87509493787934	4.3775945524556	4.02939344785079	4.21524432693578	4.56400554362717	4.31759901485636	4.35772386352729	4.45913492706675	0.0626712688113874	0.881771592869327	0.955451670099647
Merged-chr4-106429325-4	chr4	106429247	106429447	+	931.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183225, intron 62 of 67)	intron (NM_183225, intron 62 of 67)	34978.0	NM_153565	100102.0	Mm.133268	NM_153565	ENSMUSG00000044254	Pcsk9	AI415265|AI747682|FH3|HCHOLA3|Narc1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding	5.48607159249942	4.88056559782589	5.77328985249163	5.61119865949043	4.7516124212314	4.67734478652759	5.02182616468344	4.81390814867808	-1.24816805090333	0.000434893889735885	0.00688814245160449
Merged-chr10-8065892-4	chr10	8065804	8066004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109781.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	6.94103101689175	6.90794114022776	7.01866793175999	7.32991591241875	6.99969900941441	6.8093114765613	7.00763526653319	7.13149633447107	-0.113234271951835	0.586992985864683	0.819013564908904
Merged-chr9-54734042-3	chr9	54733954	54734154	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025376, intron 1 of 10)	intron (NM_001025376, intron 1 of 10)	495.0	NM_023191	66317.0	Mm.28437	NM_023191	ENSMUSG00000061559	Wdr61	2700038L12Rik|2810418I05Rik|REC14	WD repeat domain 61	protein-coding	4.82823053821304	4.57912548557216	4.31669355787532	4.58254386929989	4.31650382222604	4.05327200149235	4.70494520835363	4.85765242149529	-0.152004067243984	0.714911674077558	0.886003030420421
Merged-chr7-19474264-4	chr7	19474151	19474351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-15757.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	5.10390463575053	5.09510298157172	4.76665626352042	4.83141601691125	5.37636977773158	5.66881428858375	5.04645852476098	4.96188731999744	0.642523999300581	0.0555906806610578	0.246811942288762
Merged-chr7-55920879-4	chr7	55920745	55920945	+	765.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 24 of 30)	MTC|LTR|ERVL-MaLR	41648.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	3.67729255650817	3.39317322886592	3.51443436404231	3.44426855803785	3.80915816292233	3.74357833010064	3.84987632088817	3.51259447557385	0.73072013558275	0.126677475355805	0.395698249806944
Merged-chr11-120159013-4	chr11	120158907	120159107	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-7656.0	NM_001164798	72055.0	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	5.27883097573722	5.42077452036086	5.0106093736667	5.26202599764986	5.19812289278851	5.45309617067694	5.39569675475065	5.14871542660398	0.0804047201746556	0.786849457113	0.917218685117941
Merged-chr13-117128004-2	chr13	117127904	117128104	+	799.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2021.0	NR_046023	623312.0	Mm.131279	NR_046023	ENSMUSG00000114792	Gm6416	-	predicted gene 6416	ncRNA	3.31558753772148	3.1560850326416	3.25070974945221	3.80383937883212	3.47951003808525	3.61076421743353	3.77394551166287	3.6977036720437	0.689503397959196	0.23036561296734	0.53971870463126
Merged-chr17-5493959-4	chr17	5493840	5494040	+	975.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	1340.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	5.39199715927164	5.08564588495602	5.92977973380715	5.95729748090516	5.41434773548471	4.9270726108043	5.68436778289699	5.75582845156609	-0.28116910865455	0.436864965440366	0.725346661420103
Merged-chr3-148795986-3	chr3	148795881	148796081	+	839.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	158654.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	3.8721759386764	3.63293064598626	3.92042366345492	4.15567086277108	3.84567422471146	3.52617247077294	3.7036150138247	3.96392489453991	-0.421142535467435	0.385040633217194	0.686478690896822
Merged-chr3-105802015-6	chr3	105801918	105802118	+	994.694458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145541)	promoter-TSS (NM_145541)	-637.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	4.73882500517347	4.67350417119491	4.5958022124261	4.60134244116457	4.6130179496115	4.15719654175845	4.17951812588377	4.38669617611551	-0.654226632277267	0.0901819499945883	0.327855149216746
Merged-chr2-70825706-4	chr2	70825630	70825830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172664)	promoter-TSS (NM_172664)	-250.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	6.06878388189042	6.59001256466155	6.35797208015967	6.10711870748695	6.22796532171071	6.0625975046179	5.829415659124	6.22721604431382	-0.292432733177485	0.254123610383489	0.565452638828546
Merged-chr4-128811569-4	chr4	128811458	128811658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-5446.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	6.80719102628302	6.98721622872902	6.17840486941375	6.44035657806579	6.78036468009131	6.74988102017084	6.66219006004823	6.35829369680057	0.0180178223861678	0.943976240843654	0.979871808316036
Merged-chr12-32953977-4	chr12	32953895	32954095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_044986)	promoter-TSS (NR_044986)	50.0	NM_013635	19027.0	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding	8.80566822940635	8.92920939878402	8.85123470634187	8.90900794467417	8.85064543321332	9.11325211210792	9.13268494374932	8.93329602104131	0.16602506035482	0.261940446674489	0.573946715525425
Merged-chr1-144247696-4	chr1	144247598	144247798	+	939.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015811, intron 3 of 4)	intron (NM_015811, intron 3 of 4)	1406.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	4.7288133209782	4.74491492118833	4.65125527322783	4.67279814861018	4.82134334057027	4.9388515544911	4.36452036172837	4.90320321231053	0.163744604021334	0.641594207015762	0.848816662227704
Merged-chr19-5098570-2	chr19	5098470	5098670	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302333)	promoter-TSS (NM_001302333)	-49.0	NM_009920	12794.0	Mm.299737	NM_009920	ENSMUSG00000024873	Cnih2	CNIH-2|Cnil	cornichon family AMPA receptor auxiliary protein 2	protein-coding	2.93585352050992	2.83216547941525	2.93624540223792	2.61826501422112	2.78804162363473	3.04659169688583	2.98214034866379	2.67327677760241	0.225008567083131	0.723907818503124	0.889854669082703
Merged-chr9-48390089-3	chr9	48389980	48390180	+	804.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172921, intron 4 of 8)	intron (NM_172921, intron 4 of 8)	28039.0	NM_172921	244853.0	Mm.325522	NM_172921	ENSMUSG00000044229	Nxpe4	C130036J11|D930028F11Rik|Fam55d	neurexophilin and PC-esterase domain family, member 4	protein-coding	2.68974022516554	2.61794085425785	2.60508987922023	2.20827667001651	3.69986377987349	3.10867043050222	3.6447672923131	3.39260459099061	6.16670822234929	3.48286760862864e-11	2.86597726606448e-09
Merged-chr10-127421710-4	chr10	127421608	127421808	+	948.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359246, intron 1 of 23)	intron (NM_001359246, intron 1 of 23)	841.0	NM_001359243	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	4.40332537976377	4.85505470704379	4.25212232997633	4.79010360189063	4.84665912189	4.91113891061903	4.75327739159054	4.62083446311956	0.360830982473316	0.338664251469041	0.648109446558985
Merged-chr16-16599938-4	chr16	16599785	16599985	+	797.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301817)	promoter-TSS (NM_001301817)	93.0	NM_001301817	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	4.15526947027706	3.65735142554615	4.11751496875765	3.62506225443173	3.42320975667701	3.77047817281274	3.51962562217724	3.59075201850893	-0.995057151945284	0.0529406559704539	0.240011575574057
Merged-chr8-40644999-2	chr8	40644893	40645093	+	824.833374	f0_c57.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-10201.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	3.12497422377258	3.02855074786563	3.12532588621658	2.41724899660361	4.60933008440917	4.387331375018	4.63625996461479	4.56732744586913	8.39260108490004	1.14490369681168e-18	3.24673706116966e-16
Merged-chr11-110372001-4	chr11	110371898	110372098	+	733.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27104.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	3.5580095258503	3.57946725710783	3.3004779120349	3.54512359236116	4.06654080010951	4.2087176702245	3.70829620660555	3.49660444250425	1.18187298747408	0.0209802979685699	0.132260794358767
Merged-chr9-69993182-4	chr9	69993089	69993289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008238, intron 1 of 9)	intron (NM_001008238, intron 1 of 9)	3723.0	NM_001008238	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	6.33565341284791	6.70743706060625	5.97552592479762	5.95080071961219	6.20677502821731	6.42172592950801	6.0341115524123	5.74337491564983	-0.230504068211288	0.430835912870673	0.721309079893587
Merged-chr5-32133730-4	chr5	32133617	32133817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2755.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	6.32339540952807	5.59001686081135	6.15672233639213	5.82894490996736	6.2390400763951	6.16329114596622	6.48461214021942	6.31997488326062	0.484557642738001	0.0672057819718631	0.276590942756591
Merged-chr11-107482616-2	chr11	107482534	107482734	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025894, intron 1 of 10)	intron (NM_025894, intron 1 of 10)	3106.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	3.43343356941268	3.32007236713419	3.49349659218672	3.54904206166186	3.50061938378532	3.87682429995239	3.78617637614738	3.75427776894453	0.853983844297648	0.0828590539781759	0.312701201346409
Merged-chr7-66389356-4	chr7	66389237	66389437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146191)	promoter-TSS (NM_146191)	-996.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	7.22871529418386	7.28291339269748	6.85715572821278	6.74467112540532	7.56760369806522	7.28280684254418	7.1937456521624	7.07679366658175	0.353912102379527	0.115369134677509	0.375760027327283
Merged-chr12-102445643-4	chr12	102445552	102445752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5839.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	8.16540597817921	8.27505671783619	8.11732752410923	8.06835221922806	8.03865646359396	8.18290237562701	8.12808584032642	8.12447670013125	-0.0503996803969936	0.745691602803325	0.899661639795912
Merged-chr7-13023260-4	chr7	13023167	13023367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011588)	promoter-TSS (NM_011588)	-885.0	NM_011588	21849.0	Mm.15701	NM_011588	ENSMUSG00000005566	Trim28	AA408787|KAP-1|KRIP-1|MommeD9|Tif1b|Tif1beta	tripartite motif-containing 28	protein-coding	6.94933515902396	6.92470879846989	6.61854337909788	6.84436817048408	6.59275330739293	6.49406703695788	6.73361181726802	6.53224897813347	-0.357640972990674	0.0839883136924116	0.315151618777874
Merged-chr14-63860874-2	chr14	63860774	63860974	+	983.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028228, intron 1 of 6)	intron (NM_028228, intron 1 of 6)	562.0	NM_028228	72400.0	Mm.379214	NM_028228	ENSMUSG00000021958	Pinx1	2210403I16Rik|2610028A01Rik|67-11-3|AU024023|LPTS|LPTS1	PIN2/TERF1 interacting, telomerase inhibitor 1	protein-coding	2.90163680115912	2.897784694452	2.84154548476674	2.67200499560063	2.60366288624732	2.95010467450033	2.83124569635391	2.77681278469197	-0.15943028357968	0.802146442591734	0.923733899390227
Merged-chr19-11818037-2	chr19	11817943	11818143	+	974.5	f0_balb.idr|f0_c57.idr	intron (NM_011502, intron 1 of 10)	MIRb|SINE|MIR	1360.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	5.27954323237317	5.48343546259261	4.58341113599177	5.09789701210413	4.62198268215689	4.76454588402129	4.73400263997182	4.83162992837006	-0.831457526889646	0.0225112633170785	0.138588470838572
Merged-chr7-30563727-4	chr7	30563620	30563820	+	947.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025498)	promoter-TSS (NM_025498)	380.0	NM_170760	233073.0	Mm.34790	NM_170760	ENSMUSG00000078765	U2af1l4	AA407033|AF419339|AI451269|AW553050|U2af26	U2 small nuclear RNA auxiliary factor 1-like 4	protein-coding	4.36781433722226	4.81367749307514	4.59517383810375	4.8948894459742	4.88902426396953	4.68506597112227	4.89938957296544	4.46115056495487	0.108011782176058	0.771713881613226	0.91047425667315
Merged-chr3-108878606-4	chr3	108878444	108878644	+	765.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177091, intron 4 of 12)	intron (NM_177091, intron 4 of 12)	11464.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	3.54714634894365	3.85544675200362	4.06763657625393	3.57260106203632	3.71864655015136	4.05554424826251	3.81726803704765	4.10700866810994	0.455728724101555	0.339424993009067	0.648745511060186
Merged-chr2-73397122-4	chr2	73397028	73397228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10648.0	NM_001276444	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	6.07148026640895	6.19191366732501	6.43891723269676	6.44382392921045	5.63112876198137	5.88551648817981	6.10335612646476	6.30042932470194	-0.475520446129755	0.0734352936485633	0.291883558555455
Merged-chr7-132569007-4	chr7	132568918	132569118	+	913.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016978, intron 2 of 9)	intron (NM_016978, intron 2 of 9)	7380.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	4.16181470119806	4.59881969069206	4.29979965712558	4.32882867454855	4.25043528319144	4.01830800713427	4.09608488232519	4.42091012440615	-0.366755697807557	0.368637669917626	0.673101867894841
Merged-chr17-86114404-4	chr17	86114314	86114514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030133, intron 10 of 20)	Lx8|LINE|L1	30761.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	5.90580818380597	6.33300864089383	6.32162265532377	6.77861049913625	6.41426864230024	6.25403527000449	6.68335789026003	6.38943722266929	0.0767817856208601	0.776351304976862	0.912888995043168
Merged-chr10-99247344-4	chr10	99247238	99247438	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-15893.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	5.12669275660051	5.88172266173573	4.97361821858381	5.34506831178114	5.60236530513796	5.5356221491211	5.36293235450229	5.7222896167521	0.30579265070587	0.354309176899979	0.661031778977135
Merged-chr13-117198526-4	chr13	117198435	117198635	+	922.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-22038.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	4.24232216394621	4.28382040151046	4.62943171444675	4.51592143000671	4.60950378220636	4.72393833181298	4.64358786635208	4.24044323348833	0.303528901280695	0.427736950686795	0.71887209364609
Merged-chr13-117020727-4	chr13	117020625	117020825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	4791.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	6.32269170731934	6.48739683117102	5.91397333573007	5.48388801485666	6.61379360217711	6.37074267899276	5.9538620696103	5.93368400441118	0.23690271516453	0.461969736936685	0.743511597372954
Merged-chr3-21953077-4	chr3	21952984	21953184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123568.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	7.94465079410665	8.09414687593222	8.10030698094429	8.06266730360626	8.18693675265633	8.33951683550351	7.99050959768713	7.78095569073272	0.0509432348218775	0.776752717574551	0.913014097434423
Merged-chr13-24616771-4	chr13	24616656	24616856	+	689.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178658, intron 1 of 13)	intron (NM_178658, intron 1 of 13)	2150.0	NM_178658	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	4.01066888735943	3.67703113790302	3.77081648530571	3.89460009006196	3.8197193988468	3.45226757950254	3.85607113977653	4.13346907467097	-0.0176270290303058	0.97088343143172	0.989540146809868
Merged-chr15-103333889-4	chr15	103333777	103333977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013866, intron 1 of 7)	intron (NM_013866, intron 1 of 7)	461.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	5.89546844158255	6.05807254776699	5.40935900492345	5.98037167414023	5.79968455055596	5.85250820288121	5.91035614950898	5.86963987104464	-0.0237715704722555	0.929298893128178	0.974391484333367
Merged-chr15-57921568-4	chr15	57921477	57921677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081396, intron 3 of 20)	Lx9|LINE|L1	9378.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	6.53875297277734	6.61634762064501	6.78499422569966	6.60405646302149	6.82662371462286	6.68232697804972	6.91860595277176	6.79402218585211	0.249103508255679	0.214026725145985	0.519690532481614
Merged-chr15-59568812-4	chr15	59568721	59568921	+	774.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-79833.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	4.00981771431121	4.17199659021327	3.66634684593797	4.09911937422112	4.20255366996738	4.32428196576324	4.30265849003264	4.10525312546048	0.572239088477704	0.180446567450661	0.476851911066292
Merged-chr9-70194825-4	chr9	70194744	70194944	+	863.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12506.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	4.07188770803886	4.38723423557249	4.11861923123459	4.51522946124409	3.81791766814972	3.81387214691637	3.79901644522988	3.92110151680751	-1.2573337579645	0.00452861610489859	0.0441323063705609
Merged-chr15-55380206-4	chr15	55380103	55380303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 10 of 47)	intron (NM_181277, intron 10 of 47)	72453.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	7.31408940087243	7.45940815763968	7.11026251330845	7.56565712179393	7.28803823529419	7.60289035097659	7.60034200224502	7.18900966359172	0.0602367815437092	0.768500457695948	0.909366017959867
Merged-chr7-143023695-4	chr7	143023596	143023796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110354, intron 4 of 4)	intron (NR_110354, intron 4 of 4)	18037.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	6.92894327480376	7.29650801733768	6.71745662922788	6.43903485230952	7.10433609263607	7.2187450221205	6.86875973038528	6.88551014128977	0.210931731645121	0.395037269522346	0.694006264372866
Merged-chr7-25787121-4	chr7	25787017	25787217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 2 of 19)	MIR|SINE|MIR	1616.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	6.17892719879665	6.23941588695979	6.27423103256638	6.07367093432642	6.3998441411822	6.16695210627914	6.08861369058787	5.76322940001662	-0.077007718807047	0.759138271177725	0.905467910117288
Merged-chr14-21847793-5	chr14	21847674	21847874	+	873.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_176925, exon 1 of 3)	5' UTR (NM_176925, exon 1 of 3)	196.0	NM_176925	319486.0	Mm.390671	NM_176925	ENSMUSG00000090564	A430057M04Rik	-	RIKEN cDNA A430057M04 gene	protein-coding	3.87392186177955	4.10797787860436	3.82659516205037	3.77740817111738	3.66940462365936	3.61047402504366	3.60127611627664	3.61288920838542	-0.829005446105371	0.0782393547051887	0.302631149252141
Merged-chr5-125405887-8	chr5	125405768	125405968	+	893.064575	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15851.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	3.82811510493251	3.72574674081569	3.66465684071388	3.43099941336997	3.99514583055052	3.8974781976031	4.00107700401902	4.14291220434952	1.03868814070541	0.0212186423024838	0.133138376273668
Merged-chr11-3371444-4	chr11	3371348	3371548	+	830.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361623)	promoter-TSS (NM_001361623)	-44.0	NM_173053	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	4.23244975856313	4.49541288280517	4.27717817998454	4.36475052061749	4.20758097449092	4.05392182175723	4.02355274160831	4.23049251218147	-0.532716262566958	0.1813771139578	0.477976833030267
Merged-chr8-82403218-4	chr8	82403096	82403296	+	993.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001254747)	promoter-TSS (NM_001254747)	-610.0	NM_008357	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	4.78252022901024	5.10816108067909	5.15085334466995	5.37865904549808	5.1082799707838	5.38538582505859	5.2172409402041	4.93975925991092	0.0518491005221521	0.874797264857881	0.952942893013974
Merged-chr16-8672195-4	chr16	8672099	8672299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025821)	promoter-TSS (NM_025821)	-46.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	7.08365834516339	7.19612243271049	6.89086334759285	7.0071033496188	7.12290962166789	7.20057264312665	7.5370166873427	6.94069172940375	0.230292937234596	0.271068117107175	0.582858275913712
Merged-chr1-176824052-4	chr1	176823955	176824155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 1 of 18)	intron (NM_001357390, intron 1 of 18)	9395.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	7.45571991523487	7.63758722942228	7.39543070263265	7.69892695150284	7.8747410485034	8.01930777889822	8.1972418752465	7.67161162725824	0.511859623375329	0.0073100729527264	0.0628258491550485
Merged-chr9-47616580-3	chr9	47616486	47616686	+	835.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	86234.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	4.08983260027701	3.62974544658776	3.96467921686983	4.14199763013642	3.44277186316442	3.47212213296203	3.53886145963891	3.77239700636701	-1.27889183124148	0.010701504719475	0.0829851073453001
Merged-chr7-25788774-4	chr7	25788665	25788865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190974)	promoter-TSS (NM_001190974)	-32.0	NM_001190975	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	6.45397581744499	5.97087365420058	6.2134640205824	6.50278419961345	5.63058179111815	6.38865261011249	5.99839959690345	5.90982605711245	-0.477211895368403	0.0867430003822062	0.321209032577518
Merged-chr12-86833936-4	chr12	86833850	86834050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50864.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	8.09928945703336	8.24049287866274	8.00860461193939	8.0429679853912	8.03185061576296	8.23285791729777	8.12978506857164	7.94760456067368	-0.0162486202760995	0.92054372267578	0.970515472884726
Merged-chr1-170644502-4	chr1	170644427	170644627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177068)	promoter-TSS (NM_177068)	-5.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	6.51128049806019	6.35371785323555	6.61520354052605	6.60162856459137	5.79948951405847	5.82646201823421	5.9573334768993	5.9836716537511	-0.977710686304076	2.25174431062523e-05	0.000566149446435866
Merged-chr2-164877971-3	chr2	164877884	164878084	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1384.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	3.56245176937027	3.42846563810589	3.48046365978706	2.81998565963251	5.39754824901807	5.79041477569249	4.566154195845	5.3674043637182	5.67393206386088	5.49381548637209e-23	2.69685718968606e-20
Merged-chr9-21316981-4	chr9	21316878	21317078	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-3741.0	NM_001359227	68682.0	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	6.73655799549967	7.01443013690531	6.38534017633698	6.40845896816994	6.34212309000029	6.48958371910447	5.86494535128936	5.63384359530852	-0.783779162307783	0.00775699117996767	0.0657068755443198
Merged-chr2-143844629-1	chr2	143844529	143844729	+	583.5	f0_balb.idr	intron (NM_001291061, intron 4 of 7)	MLT1A1|LTR|ERVL-MaLR	18544.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	3.22815798846671	3.15349401701495	3.05892630361041	3.06119450196191	3.15340854267433	3.03913367636028	2.98719679110705	2.99563547855037	-0.29798392078796	0.600411905712218	0.826786119085537
Merged-chr6-148533147-1	chr6	148533047	148533247	+	545.0	f1_balb.idr	Intergenic	B4A|SINE|B4	81162.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	3.26675820388174	3.28722244610338	3.21087048035912	3.12313751899504	3.32415225098424	3.19925592567539	3.08031303329282	3.15041281471675	-0.0792439797173877	0.88465603111523	0.95668385959816
Merged-chr11-20204137-3	chr11	20204044	20204244	+	796.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	intron (NM_008996, intron 1 of 5)	2732.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	3.25010894744616	3.66124134427635	3.62463215623759	3.07467152138994	3.27107247959862	3.54095167542375	3.23878583697854	3.04957582325615	-0.48248807332936	0.413836117820889	0.708769033454597
Merged-chr7-35051696-4	chr7	35051610	35051810	+	986.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009884, intron 1 of 1)	intron (NM_009884, intron 1 of 1)	4856.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	6.19331424519867	5.34648676504474	5.90320656402494	6.03111865203497	5.68404785518948	5.12948666692591	6.07320946038877	5.65906789996757	-0.365696542199255	0.272167272607344	0.583708684767249
Merged-chr2-91976206-2	chr2	91976109	91976309	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12646.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	2.87905527653204	2.61169186889177	2.6060417754012	2.77176658105831	3.01616551054464	3.04943942285621	2.86902494159301	3.05074753112529	1.21313984685444	0.0520145307097299	0.237436175295829
Merged-chr11-79088212-4	chr11	79088109	79088309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-28373.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	6.90197752019673	7.02257820428342	6.56383722924395	6.94892795877064	6.41842224878503	6.75814237844804	6.84216610760749	6.93646482152075	-0.18756927321149	0.405996768868966	0.702509821356576
Merged-chr5-121220896-2	chr5	121220796	121220996	+	932.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 1 of 75)	CpG	677.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	2.90112085602168	2.86548243626117	2.83320257436567	2.62906279889755	2.94197108302169	3.46670044472505	3.13087395076863	2.96493353467561	1.42728676065091	0.0202089140284202	0.128985858288103
Merged-chr3-103830881-4	chr3	103830787	103830987	+	877.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D2|LTR|ERVK	-1809.0	NM_001142959	229672.0	Mm.297245	NM_001142959	ENSMUSG00000044165	Bcl2l15	Bfk|Gm566	BCLl2-like 15	protein-coding	4.39388505945858	4.67379284375673	4.17806176935652	3.82013861016298	4.33056946055334	4.09921702254298	4.01176301062286	4.26641884039795	-0.271192878820748	0.55339585470156	0.800173960261692
Merged-chr2-27762711-4	chr2	27762612	27762812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011305, exon 10 of 10)	3' UTR (NM_011305, exon 10 of 10)	52129.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	8.10249140354816	8.05854107706671	8.33275307475516	8.09306033623062	7.87395116310155	7.96098411771732	8.23492282081435	7.74509535442397	-0.235889880841526	0.188889938696512	0.487687851483034
Merged-chr2-69015393-4	chr2	69015287	69015487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 4 of 10)	intron (NM_001347161, intron 4 of 10)	-120413.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	7.15237610318137	6.97490801233704	7.30265649692072	7.60725959683797	6.962861066761	6.75716360026037	6.91034404947942	7.27740296806059	-0.414785496609042	0.0699449517622213	0.283004304313503
Merged-chr3-89350054-4	chr3	89349966	89350166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009614)	promoter-TSS (NM_009614)	-38.0	NM_009614	11490.0	Mm.274049	NM_009614	ENSMUSG00000028041	Adam15	AD56|MDC15	a disintegrin and metallopeptidase domain 15 (metargidin)	protein-coding	6.7072642717668	6.51622527684031	6.39876692905579	6.26059099168279	6.25102354265854	6.28130344132626	6.41737718005836	6.35859086036753	-0.211058751810468	0.354747912743573	0.661365305978239
Merged-chr18-24039592-4	chr18	24039496	24039696	+	719.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18783.0	NM_021559	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	4.14248579642794	4.48824113029892	4.28507033466401	4.35295602806969	4.20730676238783	4.31817319925226	4.35190881302209	4.41010020469911	-0.0223173440655705	0.953743668893415	0.983547181850056
Merged-chr9-118868949-4	chr9	118868839	118869039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-57597.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	5.3564755847631	5.63324971506513	5.91361752952904	6.313446102884	5.71042226884611	5.47035461013271	5.57048445636717	5.84343772837192	-0.354223931406305	0.265897037462212	0.577619643213172
Merged-chr17-74017847-4	chr17	74017750	74017950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053188, intron 4 of 4)	intron (NM_053188, intron 4 of 4)	30066.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	5.84281776809803	5.43117248464301	5.59051526239935	5.70704423465913	5.7389687636144	5.97163391360871	6.06150376093959	5.83968212564303	0.407035383755054	0.120458496869484	0.384231026156083
Merged-chr3-8983266-3	chr3	8983173	8983373	+	870.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-19127.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	3.76886604520249	3.92561611467694	3.71971458323081	3.59165729250961	3.7756070013504	3.48725627945943	3.60014530680203	3.55604069319152	-0.411802593445123	0.396419606992471	0.69519327480908
Merged-chr6-42860491-4	chr6	42860383	42860583	+	762.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22600.0	NM_147064	259067.0	Mm.451673	NM_147064	ENSMUSG00000049168	Olfr449	GA_x6K02T2P3E9-4722003-4721068|MOR103-1	olfactory receptor 449	protein-coding	3.66649413891483	3.52069498052886	3.97511044669882	3.34443675939905	3.49131652315583	3.73541579728606	3.31541860023541	3.18993138784255	-0.625196262314501	0.262939187592686	0.574735947525663
Merged-chr3-56183703-1	chr3	56183603	56183803	+	860.7999880000001	f0_balb.idr	promoter-TSS (NM_030595)	promoter-TSS (NM_030595)	-2.0	NM_030595	26422.0	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	3.91247458713497	3.93153804964575	3.5572096674224	4.17721671246647	3.1106429813659	3.4855266150067	3.65431622425749	3.61243229302821	-1.4110114472155	0.0105322426042546	0.0819943668739189
Merged-chr4-134119929-1	chr4	134119829	134120029	+	600.0	f0_c57.idr	intron (NM_026257, intron 8 of 14)	intron (NM_026257, intron 8 of 14)	8824.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	2.43259249937272	2.5061981262237	2.4328054468379	2.15807891994573	3.04231232037665	3.01664532830311	2.94400162445847	2.71915271048436	3.25911193201649	1.72351947731421e-05	0.000447731360860395
Merged-chr6-122928869-4	chr6	122928773	122928973	+	777.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199311, intron 3 of 5)	intron (NM_199311, intron 3 of 5)	7025.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	3.99420302077146	4.15554294252576	4.04388152494527	4.18704282804565	4.02603644005238	4.16676293102072	4.16230765871295	3.94166114306196	-0.0824771183857149	0.841149731211925	0.939525416908854
Merged-chr11-35290418-3	chr11	35290305	35290505	+	934.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011412, intron 4 of 35)	intron (NM_011412, intron 4 of 35)	168949.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	3.58315058012678	3.5853334129106	3.50753989831234	3.24529103447836	5.26583630890503	4.81637370118553	4.89471850389481	4.36726220850121	3.68789654472779	3.29040838642666e-15	5.47214903124914e-13
Merged-chr5-118575123-4	chr5	118575008	118575208	+	881.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 1 of 30)	intron (NM_001347445, intron 1 of 30)	14389.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	4.14936624151057	4.28238582197029	4.76509023752257	4.59579161018325	4.28301305797127	3.91697633856474	4.77322436280416	4.58805972589871	-0.100565134814157	0.82230517646871	0.932138809973664
Merged-chr11-78159289-4	chr11	78159178	78159378	+	978.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009423, exon 7 of 7)	3' UTR (NM_009423, exon 7 of 7)	6272.0	NM_009423	22032.0	Mm.390418	NM_009423	ENSMUSG00000017386	Traf4	A530032M13Rik|CART1|msp2	TNF receptor associated factor 4	protein-coding	5.00749162931986	5.43423367661985	4.68390023312521	4.63233739407971	5.76218545540735	5.25408743026395	5.01912903983944	5.17295970824594	0.682209744188902	0.0703111584708643	0.284033935800094
Merged-chr2-119547631-4	chr2	119547539	119547739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019769)	promoter-TSS (NM_019769)	-12.0	NM_172857	241624.0	Mm.212773	NM_172857	ENSMUSG00000048647	Exd1	4932702D22Rik|Exdl1|mExd1	exonuclease 3'-5' domain containing 1	protein-coding	8.16252226746549	8.2998942162745	8.18825835191494	8.16791665195475	8.14624956009028	8.28468999197091	8.34964015929336	8.27034967282102	0.0718608187602673	0.638659567418339	0.84731839493744
Merged-chr6-5298332-4	chr6	5298218	5298418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183308)	promoter-TSS (NM_183308)	55.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	7.13454089474501	6.91438890010374	6.93376707657002	7.03079424678612	6.72888163981479	6.8226655815713	6.98549261487635	6.65647355971623	-0.287328099155877	0.147843409861695	0.429267768459732
Merged-chr17-29549265-4	chr17	29549170	29549370	+	861.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198647)	promoter-TSS (NM_198647)	323.0	NM_001162901	71138.0	Mm.158581	NM_001162901	ENSMUSG00000079580	Tmem217	4933413N12Rik|EG622644	transmembrane protein 217	protein-coding	3.98578086682527	3.86458576194916	3.79173993698267	3.86612103175543	3.91316992399037	3.80020050595719	4.01262258560796	3.62192824436399	-0.0822946358826425	0.854181265819869	0.945075498668337
Merged-chr11-83064142-4	chr11	83064041	83064241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011408)	promoter-TSS (NM_011408)	-971.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	7.59620924841067	7.35571777116594	7.20040583604771	6.75585308194712	7.36482287569294	7.51412134108066	7.03591949359216	6.82254816814122	-0.0534100535636793	0.833730654777737	0.936499720307167
Merged-chr17-73948941-4	chr17	73948916	73949116	+	868.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	1180.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	3.55302895722091	3.5643684853656	3.60715388875253	3.66227246179347	3.56234356109573	3.49090253186173	3.59279988290531	3.70576064498175	-0.0397556483154122	0.933393622140907	0.975967471696899
Merged-chr6-88518920-4	chr6	88518823	88519023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016906)	promoter-TSS (NM_016906)	-123.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	8.80479299498454	8.87509523218478	8.6102079743798	8.51551958703594	8.67042460642138	8.85113170896755	8.65533372728968	8.44764400477693	-0.0534754110490323	0.751194968683795	0.902050378109251
Merged-chr11-43544241-3	chr11	43544137	43544337	+	898.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045530, intron 2 of 5)	intron (NM_001045530, intron 2 of 5)	15488.0	NM_001045530	380694.0	Mm.247595	NM_001045530	ENSMUSG00000044707	Ccnjl	Gm877	cyclin J-like	protein-coding	3.08577030276454	2.91877494458822	2.86442537916105	3.07730927742356	2.81451351976488	2.62184627561011	2.59016112462364	2.73594749205382	-1.40932339360046	0.0362828798776042	0.189439182436486
Merged-chr11-115190561-4	chr11	115190450	115190650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 2 of 9)	RMER17C2|LTR|ERVK	3063.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	6.30093387905268	5.9797901477327	6.36206471372852	5.91128533040327	7.34358570361918	7.25226468410675	7.36013156255519	6.9903264802759	1.59173590775001	5.71208154985897e-13	6.39277126788383e-11
Merged-chr17-26538241-4	chr17	26538146	26538346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23266.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	6.70882845704111	6.93475144911813	6.79746400267757	6.72292822857725	7.08980081665511	6.72682621795408	6.58231932702825	6.88745536186242	0.0767887092045974	0.720368660673694	0.888262296532504
Merged-chr16-24643177-4	chr16	24643075	24643275	+	739.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-78680.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	4.25460833686403	4.07049311793577	3.93987599178226	3.66973964618635	3.97698818805425	4.25535874310476	3.81837956253635	4.03574348292196	0.107709537532157	0.813672996898353	0.92802894254307
Merged-chr8-90870539-4	chr8	90870447	90870647	+	953.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	41712.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	4.90727251239318	5.49734529675859	5.36095867652218	5.48718299610823	5.11146333163985	4.7403211258125	5.16060461989679	4.865504790421	-0.667828686433775	0.045605102935572	0.218830094502567
Merged-chr7-133636907-4	chr7	133636808	133637008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178115)	promoter-TSS (NM_178115)	-767.0	NM_178115	214764.0	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	5.35144921020094	5.24266245772063	5.18682184157432	5.31331242600411	5.50022070596596	5.58897869571887	5.92717255203951	5.85387884318627	0.766374913834961	0.00623913911671121	0.0558610922249544
Merged-chr2-91205620-4	chr2	91205561	91205761	+	948.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357067, intron 3 of 10)	intron (NM_001357067, intron 3 of 10)	2749.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	4.82741981079851	4.239398107139	5.11008070266616	4.66324268564752	4.70428029531533	4.44914197775077	4.61761914213631	5.04920221444048	-0.0322134854440885	0.936069996722834	0.976828956541432
Merged-chr12-34997939-1	chr12	34997839	34998039	+	848.0	f0_balb.idr	Intergenic	Intergenic	13178.0	NM_029294	75456.0	Mm.79179	NM_029294	ENSMUSG00000092305	Prps1l1	1700011K15Rik	phosphoribosyl pyrophosphate synthetase 1-like 1	protein-coding	3.84540556822904	3.7195243010971	4.13079850360947	4.25159615670769	2.97347746685798	3.33216883318082	3.05266193247565	3.28365501968857	-3.3189172936369	5.34213174395738e-07	1.97121615035325e-05
Merged-chr10-128626378-4	chr10	128626266	128626466	+	980.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013765, intron 1 of 3)	CpG	140.0	NM_013765	27370.0	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	4.87323974938303	4.96353230269299	5.78535528846307	4.89631810958769	5.18447118424098	5.24458876235369	5.29842347627942	5.67577875371092	0.329689733234757	0.368392502145873	0.67281911392627
Merged-chr2-150915355-4	chr2	150915304	150915504	+	886.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 2 of 6)	intron (NM_027014, intron 2 of 6)	5810.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	3.71731652959488	3.87552438091871	3.32148515671537	3.64161782747	3.72792024345764	3.56199351221862	3.43527885920938	3.56057948772003	-0.235014564362593	0.644108772351767	0.850082962136934
Merged-chr1-170215365-4	chr1	170215279	170215479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360809)	promoter-TSS (NM_001360809)	28.0	NM_010633	16589.0	Mm.209150	NM_010633	ENSMUSG00000026667	Uhmk1	4732477C12Rik|4930500M09Rik|AA673513|AI449218|AU021979|C820018A03Rik|KIS|Kist|P-CIP2	U2AF homology motif (UHM) kinase 1	protein-coding	7.04576352510318	6.91475752956931	6.63475154703514	6.68716938434855	6.61302391067924	6.81245517539552	7.29212780242844	6.94470251561043	0.152247874675303	0.51499745780965	0.777339611286406
Merged-chr10-128547847-4	chr10	128547746	128547946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134003)	promoter-TSS (NM_134003)	-102.0	NM_134003	103284.0	Mm.68289	NM_134003	ENSMUSG00000039810	Zc3h10	AI790326	zinc finger CCCH type containing 10	protein-coding	8.02563244952709	8.27059830038376	8.0870153115567	8.12729266206039	8.23728498641548	8.32203752717365	8.29651748828284	8.4761497718382	0.256947132790476	0.104472810869668	0.355445256196746
Merged-chr2-150878897-3	chr2	150878772	150878972	+	776.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	25859.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	4.08763388538097	3.65424503732197	4.25318691658534	4.29977076647422	3.65505852299866	4.02116384825897	3.60216329533513	3.9463251359851	-0.803510718198444	0.0988707379928152	0.344693043736366
Merged-chr14-46742577-3	chr14	46742473	46742673	+	711.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-17968.0	NM_001360041	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	3.90538626637212	4.21619429838525	4.13003887695124	4.15346999518448	3.65006476944499	3.55740001593817	3.88932716677219	3.50674786446494	-1.31691778126562	0.00542889737594177	0.0504930728240114
Merged-chr19-11244420-4	chr19	11244319	11244519	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045317, intron 1 of 2)	intron (NR_045317, intron 1 of 2)	21732.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	5.90380674701944	5.84977952929263	5.76716408240244	5.88521074289706	5.62508894077181	5.37863315575669	5.73790394089882	5.92216061327494	-0.285701925576585	0.27722454595426	0.589330883029546
Merged-chr6-100370506-4	chr6	100370413	100370613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-83155.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	5.99056158131985	5.82091702423829	5.57105949148348	5.5274300224486	6.01261045759943	6.3589990212463	5.9183226777281	5.7317385626911	0.471187510727505	0.0886792118127273	0.32504802332069
Merged-chr17-50729704-4	chr17	50729609	50729809	+	843.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31028.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	4.84578683902689	4.85575288519934	4.77666697085128	4.98883200660373	4.20703170938504	4.5824690794176	4.5197571934111	4.66088517502763	-0.839763091240442	0.0195641062273059	0.1260571663939
Merged-chr13-49252317-4	chr13	49252206	49252406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-3600.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	6.02738160427822	6.10607312955205	6.22508132213138	6.41099470562259	5.78820558487765	5.92107634189946	5.91000507304284	5.73908479499303	-0.593572475255601	0.0160440645023453	0.109864334672351
Merged-chr11-94544135-4	chr11	94544046	94544246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001013381, exon 5 of 9)	exon (NM_001013381, exon 5 of 9)	5061.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	5.70496634017893	5.98355064279998	5.4241925732308	5.72555206926878	5.43677948652618	5.8809821858845	5.9869165577795	5.70192362353964	0.0489897625117689	0.863980418054599	0.948900032043517
Merged-chr9-63612165-4	chr9	63612078	63612278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	9532.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	5.83109283372548	5.51479898543818	5.57056661444242	5.54877036357642	5.15481755710665	5.69114066780047	5.54245430871466	5.42716300732332	-0.277557411714719	0.335570554890494	0.645927430703489
Merged-chr7-143004917-2	chr7	143004817	143005017	+	712.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128080)	promoter-TSS (NM_001128080)	-129.0	NM_001128080	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	2.66422009675935	2.27332347873487	2.24463356833633	2.36356005452476	2.56674870403986	2.64528129941686	2.59334259998315	2.77753413276161	1.34633583591307	0.0633738916727439	0.267179228423159
Merged-chr9-15685386-4	chr9	15685278	15685478	+	904.1416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24360.0	NM_001357566	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	4.28773942433913	4.30899726589073	4.53962663153681	4.68475158113345	4.42754198251193	4.21378560199317	4.35821441358566	4.37502404549984	-0.304588515063621	0.432595463282375	0.722596762180336
Merged-chr2-25166477-3	chr2	25166357	25166557	+	883.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14301.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	3.4189466277976	3.66979132215807	3.53492677809661	3.41561550097205	3.98137159619331	3.40580434902828	3.52123454826143	3.5870573599956	0.460053891063057	0.370129649054626	0.674294883761598
Merged-chr5-65938162-4	chr5	65938067	65938267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28957.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	6.9435063058279	7.12148957264801	6.41802694147303	6.85940245237146	7.05202791425972	6.88578453430041	6.95898175201458	6.57543926252501	0.0298737217887716	0.898445829857203	0.962182180379716
Merged-chr17-45555610-4	chr17	45555506	45555706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304956)	promoter-TSS (NM_001304956)	-94.0	NM_008690	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	8.23426947128879	8.41507188725604	7.95667519674035	7.6190927217105	8.19289565805988	8.20344812735349	7.87523674625741	8.12969745741479	0.0291741090649022	0.891152919367229	0.959264629831984
Merged-chr4-148675243-4	chr4	148675122	148675322	+	830.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31905.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	4.08921749122208	3.8360666001812	3.8179765272023	4.03556483337205	4.25288954360992	4.11269435143865	4.48391974010744	4.63696344341758	1.07050974738307	0.0113101924553336	0.0861106202565185
Merged-chr8-117346046-3	chr8	117345940	117346140	+	718.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-3130.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.3792891140303	3.81051536054374	3.81028114810726	4.3483852855238	3.70376069398176	3.81500209375794	3.89994878646574	3.96379550430024	-0.766592855204522	0.105449702396918	0.357405152887106
Merged-chr7-143139058-2	chr7	143138958	143139158	+	931.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008434, intron 1 of 15)	intron (NM_008434, intron 1 of 15)	31804.0	NM_008434	16535.0	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	2.86846031550845	2.91134575540897	2.80866328230035	2.62943969195473	2.69058241045807	2.71441112139391	2.60235300919451	2.92465384387441	-0.311378066582684	0.631711120201961	0.843565387029911
Merged-chr6-83028739-4	chr6	83028636	83028836	+	825.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 9 of 9)	intron (NM_033079, intron 9 of 9)	4735.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	4.41900041469963	3.96669146425321	4.34500301837393	3.93334852970076	4.02341308266815	3.7655786475981	4.0242308758242	4.17790638014056	-0.429973208289101	0.338937323340898	0.648223242193853
Merged-chr19-7064784-4	chr19	7064688	7064888	+	862.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134147, intron 1 of 10)	intron (NM_134147, intron 1 of 10)	8020.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	4.24016366923992	4.31268355092089	4.10242075450361	3.82075542244115	4.24126352584378	4.07104932628621	4.30539017915524	4.32260337415548	0.309531493363716	0.460818224505014	0.742778563463907
Merged-chr1-33768210-4	chr1	33768097	33768297	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359274, intron 12 of 13)	intron (NM_001359274, intron 12 of 13)	-10447.0	NM_145392	213539.0	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	4.70264723246507	4.88421466242404	4.90795165612386	5.07003889544998	5.01326183042012	5.00816084363292	5.54227054413505	5.39990170958111	0.656222203951481	0.0502049392338291	0.232364742162996
Merged-chr14-69088659-3	chr14	69088559	69088759	+	812.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59370.0	NM_009285	20855.0	Mm.20911	NM_009285	ENSMUSG00000014813	Stc1	Stc	stanniocalcin 1	protein-coding	4.0827503200619	3.94464255925427	3.95396270747014	3.72955028585231	4.08154168133626	3.50997989376823	3.51452029163241	3.64525926274391	-0.585480439757459	0.25001997536068	0.561127915062205
Merged-chr5-34487595-4	chr5	34487471	34487671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26408.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	7.0482759149769	6.58884620651589	6.92668883444664	7.01240555220458	6.68791875868994	6.73190083322382	7.04842186565063	6.97234282048274	-0.0613045105708359	0.777489742136885	0.913231940387817
Merged-chr3-116053532-4	chr3	116053443	116053643	+	930.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45246.0	NM_001163514	58193.0	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding	4.17201970016295	4.37806267848346	4.43342533716904	4.58939084468558	4.36627507157484	4.02911242396226	4.37334819158154	3.96200030624151	-0.502451254722741	0.228105964968895	0.536965817353833
Merged-chr4-43924894-3	chr4	43924790	43924990	+	611.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016678, intron 11 of 20)	intron (NM_016678, intron 11 of 20)	-32812.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	3.23836697011861	3.21595184868082	2.92706716230896	3.0655371101674	3.37658668465699	3.17002334337738	3.22617266452756	3.12132129423072	0.449878965250743	0.420462023229773	0.713274332060183
Merged-chr5-92099576-4	chr5	92099516	92099716	+	794.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-15872.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	3.59772354946349	3.76086237025985	3.86953322448123	3.62651770258138	3.91615212567674	4.0395566074283	3.85307561910494	3.9152118309408	0.637128409344732	0.149296835491299	0.431488259447455
Merged-chr8-105504809-1	chr8	105504709	105504909	+	671.166687	f0_balb.idr	Intergenic	Intergenic	-7907.0	NM_175160	70796.0	Mm.100917	NM_175160	ENSMUSG00000039199	Zdhhc1	4432412D04Rik|DHHC-1	zinc finger, DHHC domain containing 1	protein-coding	3.89327157786755	4.06097399299648	4.28496923611139	3.77648807859607	3.77428765335582	3.85155644687228	3.87764765037238	3.94140435922156	-0.412000659294239	0.36340564379435	0.668566821391523
Merged-chr12-41196629-4	chr12	41196557	41196757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	172567.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	5.42391609893487	5.52952782918788	5.66550452788799	5.59451520606092	5.41623999122912	5.59997936052498	5.275338025151	5.66148800324115	-0.115648067593804	0.674546767144756	0.866154895794861
Merged-chr1-72282782-4	chr1	72282681	72282881	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356516, intron 1 of 6)	intron (NM_001356516, intron 1 of 6)	1540.0	NM_023523	111175.0	Mm.281738	NM_023523	ENSMUSG00000026189	Pecr	2400003B18Rik|TERP	peroxisomal trans-2-enoyl-CoA reductase	protein-coding	4.60268029149016	3.87232383731024	4.48999022233287	4.67508532426831	4.16303265242967	4.35518802786221	4.38811375106607	4.48705227247363	-0.241808442400728	0.574753188074005	0.812567922099025
Merged-chr2-129489668-4	chr2	129489577	129489777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	46925.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	6.74138920236133	6.6182342115919	6.50174160146204	6.52171184526861	6.54674671139769	6.42252112045092	6.54848122653942	6.11225308445487	-0.247321896979769	0.268757771079334	0.58039055787794
Merged-chr10-98744347-4	chr10	98744253	98744453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-170289.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	7.60606020987737	7.64950356029002	7.74707459550182	7.78501508663817	7.48432897878566	7.69445307221774	7.61268266773659	7.50275021096127	-0.173353420925235	0.30684890870754	0.619222185119024
Merged-chr5-141081555-2	chr5	141081455	141081655	+	706.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-80959.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	2.85188183799464	2.89464661324595	2.79258049303194	2.61757826502054	2.84333341482478	2.5470909297952	2.6561739871139	2.79117730303063	-0.326560633954665	0.621000756502343	0.837616640748534
Merged-chr7-75681284-4	chr7	75681176	75681376	+	919.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 12 of 36)	intron (NM_029332, intron 12 of 36)	-167062.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	4.0252731540604	3.91099169062805	4.28895906613477	4.32481980179077	4.38569946075546	3.81525973170346	4.14552314993837	3.56295494595244	-0.326889184734204	0.511783439704766	0.775640902406129
Merged-chr1-127240138-4	chr1	127240031	127240231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	35145.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	6.32346806835793	6.12103579075025	5.80872948707974	6.57641962980391	6.44949529878999	6.20425752414295	5.97428071684571	6.04525536442571	-0.098645218231246	0.72110833785198	0.88862329911127
Merged-chr9-116178342-4	chr9	116178236	116178436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2973.0	NM_029575	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	7.90001921808001	8.10843176524624	7.88683785241063	7.87974970504761	7.80843349263407	7.77913858429453	8.09240228025526	7.75911051685684	-0.103399708054782	0.549668351533076	0.798091581375535
Merged-chr1-59593638-4	chr1	59593493	59593693	+	891.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013771, intron 12 of 19)	intron (NM_001013771, intron 12 of 19)	69299.0	NM_001357842	381260.0	Mm.486706	NM_001013771	ENSMUSG00000047361	Gm973	AW554518	predicted gene 973	protein-coding	4.30984837527821	4.43029867553857	4.4311700776688	4.15563080650615	3.99685152720912	4.25514373613171	3.95918826721187	4.22058005642339	-0.553691446314153	0.17643675052775	0.471489392769738
Merged-chr3-9033970-4	chr3	9033864	9034064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28000.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	7.13715986982317	6.67481302791648	7.16148839837462	7.07957529744003	7.23822176741897	7.00067157368905	7.587006217587	7.61925861949299	0.4872314174774	0.0307658155070051	0.17008808569287
Merged-chr11-70084800-4	chr11	70084703	70084903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7841.0	NM_007493	11890.0	Mm.1357	NM_007493	ENSMUSG00000040963	Asgr2	ASGPR2|Asgr|Asgr-2|HL-2	asialoglycoprotein receptor 2	protein-coding	6.91024730237335	6.81125891018125	6.71846459146253	6.7265897500229	6.71778976394245	6.89479345802677	6.71364394981745	6.78606307448111	-0.0183544659868438	0.925789331463512	0.972660243313426
Merged-chr9-44191359-4	chr9	44191261	44191461	+	910.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	intron (NM_007619, intron 2 of 15)	42685.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	4.26546832657066	4.2084307770418	4.39387146370458	4.29877543449959	4.34613833811965	4.52122104623777	4.05790655679486	4.21798114444851	0.0111199126978938	0.977424122791547	0.991888117862217
Merged-chr19-42714027-3	chr19	42713910	42714110	+	935.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38765.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	4.24631366806251	4.06630820006538	4.07192962772476	4.29618797164953	3.7248228566414	3.93426257527682	3.85395323103625	4.24424560705678	-0.62440923305747	0.15626506357656	0.442131108638244
Merged-chr5-34781934-3	chr5	34781853	34782053	+	737.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010414, intron 1 of 66)	intron (NM_010414, intron 1 of 66)	20213.0	NM_010414	15194.0	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	2.56953001052185	2.7163711731074	2.65075170581267	2.62522659986684	3.19060397171803	2.98256889641504	3.10222576052345	3.57790510558441	2.57958100097936	0.000107351442382759	0.0021554776635719
Merged-chr3-109476845-4	chr3	109476771	109476971	+	666.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-97136.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	2.49873906639581	2.56320721052089	2.61815639814635	2.37632202811213	2.10279154179468	2.32419113519114	2.36037692192012	2.2961142124903	-1.55342600552317	0.0500145735783941	0.231815285064564
Merged-chr11-79253367-4	chr11	79253273	79253473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019653, intron 1 of 8)	intron (NM_019653, intron 1 of 8)	1322.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	6.30246129440558	6.67150721447803	6.12350693037964	6.11054051378348	6.65689394744846	6.44195289022677	6.17494939744627	6.1819949910271	0.104696030628547	0.686406392993667	0.871787672169905
Merged-chr4-155095476-4	chr4	155095378	155095578	+	907.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356327, intron 6 of 12)	intron (NM_001356327, intron 6 of 12)	8874.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	4.38577585339366	4.00490413855634	3.96981696578489	4.27859304916761	4.40219277144232	3.97836217653292	4.54736885303368	4.12167068321858	0.272585440763172	0.525747090415109	0.783367294725902
Merged-chr16-35754970-4	chr16	35754876	35755076	+	967.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	MTD|LTR|ERVL-MaLR	14380.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	4.09606541053134	4.70770806102613	4.75894003223288	4.64444845183796	5.03169479207207	5.10236938627238	4.80771747405218	4.55540715759094	0.647697518243906	0.0931923084971795	0.33395228493662
Merged-chr9-67845230-4	chr9	67845128	67845328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177184, intron 1 of 84)	intron (NM_177184, intron 1 of 84)	4832.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	7.05859343460017	7.34133136713926	7.30755272152447	7.12925154968832	6.86954004311376	6.52161775479477	6.62188087043808	7.09006584755003	-0.571609206864853	0.00797141855041447	0.0670330239967258
Merged-chr15-73184545-4	chr15	73184446	73184646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	CpG	401.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	5.31314747960226	5.53299442707927	5.15252007188829	5.09241847975594	5.22799925300924	5.39534348405155	5.42990755184349	5.60621067786456	0.251032004759717	0.40193293598859	0.699473960312262
Merged-chr17-35021303-4	chr17	35021219	35021419	+	896.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347347, intron 8 of 16)	intron (NM_001347347, intron 8 of 16)	4740.0	NM_001347347	27762.0	Mm.56895	NM_138582	ENSMUSG00000007030	Vwa7	C6orf27|D17H6S56E-3|G7c|NG37	von Willebrand factor A domain containing 7	protein-coding	3.34115795398887	3.50305114040858	3.52670021474093	3.7216044305586	3.81848632339744	3.90632899041832	3.62255659069235	3.63509881421046	0.634928494582758	0.200231192235485	0.502259964838292
Merged-chr2-14218347-2	chr2	14218247	14218447	+	636.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081310, intron 3 of 3)	B3A|SINE|B2	-11067.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	2.92812320998144	2.534632954134	2.73713847992038	2.78200044594432	2.81623191028387	3.15390126623538	2.91720944349535	2.86630777284568	0.839903800521158	0.188117529833597	0.486661977757708
Merged-chr2-117374418-4	chr2	117374309	117374509	+	827.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31532.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	3.94522319840607	4.07653649326117	4.49761967673461	4.18628760729592	4.48972427376058	4.18108218780004	4.03879440197517	4.70021358440818	0.459770842261343	0.288421348599064	0.60040784131807
Merged-chr7-16256156-3	chr7	16256044	16256244	+	890.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	ID_B1|SINE|B4	3194.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	3.22154556024398	3.2986686875289	3.16259251338158	3.14422602982006	3.30819721109817	3.33368065154494	2.95830725032323	3.33116897758074	0.144025934892813	0.794514033439352	0.920564651199299
Merged-chr5-138265176-4	chr5	138265081	138265281	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347507, exon 4 of 4)	3' UTR (NM_001347507, exon 4 of 4)	-1129.0	NM_153161	231807.0	Mm.164493	NM_153161	ENSMUSG00000036948	BC037034	-	cDNA sequence BC037034	protein-coding	4.07851968955041	4.35039330574781	4.31447950175169	4.48376563047517	4.34995105426832	4.60301458680768	4.16044173402613	4.02494131664334	-0.0565252862944892	0.891707233348702	0.959472066794561
Merged-chr8-27177345-4	chr8	27177277	27177477	+	862.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2731.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	4.36619486946258	4.0209331208548	4.44851728143149	4.16475830897592	4.24902550505084	4.4075317189242	4.34696616631262	4.48447197625396	0.289583876896129	0.459893213992089	0.742271214480192
Merged-chr5-137787772-4	chr5	137787671	137787871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005426)	promoter-TSS (NM_001005426)	-31.0	NM_001005426	381678.0	Mm.332765	NM_001005426	ENSMUSG00000037108	Zcwpw1	Gm1053	zinc finger, CW type with PWWP domain 1	protein-coding	6.76562289336519	6.49496647114564	6.00986780202366	5.75007650298359	6.48135658927334	6.58637198670649	6.21365353161926	6.35345420779594	0.165155326294327	0.573160174114122	0.811692154196247
Merged-chr3-154177922-3	chr3	154177825	154178025	+	916.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081263, intron 2 of 21)	intron (NM_001081263, intron 2 of 21)	152635.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	4.50764396489757	4.47377118367713	5.26861091033554	5.12030031958412	3.57603303316053	4.10397868962392	3.69898418589767	3.90950299525606	-2.74966447836886	3.04802802669143e-08	1.46494798374087e-06
Merged-chr16-92412445-6	chr16	92412252	92412452	+	934.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-12274.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	3.81699886462403	4.01644997217706	4.27354388608756	4.07213508060032	3.91041635605611	3.69607427831132	3.95544261232926	4.06343970301158	-0.384375762499536	0.386484574944736	0.687635667106349
Merged-chr13-101678596-5	chr13	101678416	101678616	+	808.608337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14114.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	2.78442592570078	2.63963928856177	2.96792314857681	2.49434615303898	2.95944589293201	2.8933694033089	2.83830300961089	2.96622804787243	0.898586999686009	0.163005391162516	0.452588576125634
Merged-chr2-173738302-4	chr2	173738192	173738392	+	941.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 1 of 5)	intron (NM_019806, intron 1 of 5)	721.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	4.25638866672064	3.89935493440195	4.52019389117405	4.49970376189388	4.54306333570599	4.56918418524124	4.28584532338847	4.86141583368359	0.578460517980867	0.166886536540802	0.458358418908696
Merged-chr2-25333159-4	chr2	25333008	25333208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027448)	promoter-TSS (NR_027448)	365.0	NM_001029983	227619.0	Mm.270798	NM_001029983	ENSMUSG00000036646	Man1b1	E430019H13Rik|ERMan1|Gm108|MANA-ER	mannosidase, alpha, class 1B, member 1	protein-coding	5.13514937194293	5.17958802336355	4.65046962905231	4.16890820554833	4.78831837316269	4.90829772675485	4.62885793111179	4.97963540228591	-0.0160091704826447	0.969179380449812	0.988873837789174
Merged-chr5-134486103-3	chr5	134486005	134486205	+	855.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29389.0	NM_001081464	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	3.17043997160244	3.22970535584205	2.96373189718211	3.25965122940316	3.5802089217559	3.34598357404911	3.67326355159976	3.29135317285925	1.11483890471141	0.0442802470130667	0.214668536613884
Merged-chr6-54816656-4	chr6	54816557	54816757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199143)	promoter-TSS (NM_199143)	-259.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	8.67122132864339	8.43830295484408	8.33006976298238	8.54941133016983	8.21950778673922	8.31563956167571	8.62896480480213	8.29091990943594	-0.168357835965399	0.327090587816153	0.63867529942819
Merged-chr17-57078558-4	chr17	57078471	57078671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153551)	promoter-TSS (NM_153551)	-61.0	NM_153551	70785.0	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	6.43214390937257	7.0171133026059	6.52346952430824	6.76489059520468	6.66151670290281	6.89351338768911	7.04205419266624	6.90538312999401	0.231583422381748	0.309499811047918	0.621751158573599
Merged-chr17-80061402-4	chr17	80061365	80061565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152119, intron 1 of 13)	CpG	803.0	NR_152119	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	5.55674828050258	6.00747747542401	6.24150906682824	5.91827496515006	5.70075549395319	5.64622582287031	5.76764283002119	5.81697801210913	-0.354408480699571	0.187684169950206	0.48610501726011
Merged-chr19-5637398-4	chr19	5637263	5637463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009045)	promoter-TSS (NM_009045)	-127.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	7.09672228143834	7.71886625399719	6.98306086798557	6.75625028100492	7.36887693663858	7.64225570884318	7.31456794014743	7.17555051523302	0.265692772181834	0.294336482327729	0.606614080475317
Merged-chr2-126675330-9	chr2	126675259	126675459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355109)	promoter-TSS (NM_001355109)	-7.0	NM_001355109	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	5.93285112434304	6.43687570377013	6.39604830339058	5.79036772385686	6.01056928001084	6.19953274183619	5.85652016740246	5.85795088448811	-0.266581019330741	0.337118045979708	0.646924549627673
Merged-chr2-160018553-4	chr2	160018456	160018656	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040499, intron 1 of 3)	intron (NR_040499, intron 1 of 3)	1903.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	4.9643515689437	5.21409843553307	5.03299825303657	4.55805611762519	5.34675728090935	4.91490745785613	4.83314950864188	4.85296365595562	0.129101062898492	0.722654527192733	0.88928160490736
Merged-chr2-174464119-4	chr2	174464017	174464217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025983)	promoter-TSS (NM_025983)	-16.0	NM_025983	67126.0	Mm.20841	NM_025983	ENSMUSG00000016252	Atp5e	2410043G19Rik|ATPE|AV000645|Atp5f1e	ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit	protein-coding	7.20334352095156	7.2099182749903	6.90534828203706	7.60178079983328	7.58418076786413	7.32335811568129	7.9370799490407	7.69120464238146	0.510703043135383	0.0249758521229009	0.148380426220963
Merged-chr9-103108599-1	chr9	103108499	103108699	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-3475.0	NM_173781	270192.0	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	3.29723501000376	3.10973588221053	3.21314750635633	2.44329941166122	4.94045818539642	4.63000398431515	4.49872723633998	4.83146699330004	8.00297717123421	2.13503651417285e-19	6.66534052817146e-17
Merged-chr3-69202532-4	chr3	69202427	69202627	+	944.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-19892.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	4.49651662923542	5.2551628523291	4.67038803366426	4.55292357321854	4.8219463824455	4.95956187585011	4.72654179074502	4.62622041214687	0.0194028941879644	0.95940744613528	0.985513818852278
Merged-chr10-121586148-4	chr10	121586067	121586267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019786, intron 1 of 20)	intron (NM_019786, intron 1 of 20)	627.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	6.96162290342211	7.49047426889074	6.72346624759674	5.99205949240505	7.32770103311521	7.41473486277899	6.92743743713701	6.80836242607261	0.339166189598212	0.286581579126314	0.598269304922333
Merged-chr9-96391495-4	chr9	96391372	96391572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27041.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	5.11217020238329	4.98088432266363	5.28356406787094	5.3468507878002	5.41482832400018	5.52173865117343	5.87214881835082	5.77552026592203	0.791479016348589	0.00813852895657773	0.067968141189733
Merged-chr6-94509457-4	chr6	94509338	94509538	+	961.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026255, intron 2 of 9)	intron (NM_026255, intron 2 of 9)	9124.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	6.53647444809027	6.66298627771567	6.76848007103653	6.83046628644788	5.7738367954903	5.53015427472055	5.67265004718388	5.33759213254639	-1.7163105533495	1.02987072730533e-11	9.26740436142425e-10
Merged-chr4-150078816-4	chr4	150078728	150078928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8675.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	4.96455410060087	5.23867675321386	5.37188213448129	4.76864896060793	5.24478083616619	5.31137545073955	5.37088761791756	4.58084804724869	0.126610732226171	0.727652930499332	0.89159435953955
Merged-chr11-78349833-4	chr11	78349796	78349996	+	839.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011676)	TTS (NM_011676)	3186.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	3.59773600297924	3.36647483285385	3.26347762950687	3.59986615304798	3.16877742032249	3.43901504980446	3.63038391056361	3.43980724421481	-0.158516308484643	0.767383548916164	0.909004900573458
Merged-chr11-4194295-2	chr11	4194195	4194395	+	753.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	Lx9|LINE|L1	7462.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	3.214128209648	2.99523101659086	3.15709988407116	2.97256187209201	3.22025944360722	3.20826730023333	2.89016853123294	3.41935730341313	0.453569815841608	0.433675046336224	0.723221876274919
Merged-chr16-8671003-4	chr16	8670905	8671105	+	937.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025821, intron 1 of 3)	intron (NM_025821, intron 1 of 3)	1148.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	4.45497121898416	5.04807236607663	4.96212453266218	4.8730354851499	4.82493580316561	4.80877044520197	4.69233983335787	4.49968771379997	-0.291149124006385	0.416088999196037	0.710072021761014
Merged-chr14-25457786-4	chr14	25457705	25457905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1380.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	5.47710072347089	5.95725732607505	5.80114508203203	6.02728482355145	5.82077011389591	5.79897639629585	5.8180507743188	5.56290325960224	-0.149916087924751	0.580257538465386	0.815718435955212
Merged-chr3-10288708-4	chr3	10288580	10288780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029310, intron 1 of 5)	RMER17D2|LTR|ERVK	12503.0	NM_001357159	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	7.52101586506617	6.95610601367749	7.30422173666136	7.212322617915	7.32373586715621	7.20466525396084	7.40456663083985	7.24625186449913	0.0547491350767495	0.782600185746747	0.91529005173258
Merged-chr2-155729459-4	chr2	155729340	155729540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145537)	promoter-TSS (NM_145537)	35.0	NM_145537	108687.0	Mm.273706	NM_145537	ENSMUSG00000038312	Edem2	9530090G24Rik|AI327354	ER degradation enhancer, mannosidase alpha-like 2	protein-coding	6.51400203774841	6.59261467522856	6.26310024656763	6.47099426046172	6.29760957599986	6.79846936283584	6.70464483398263	6.29763132303293	0.100785616244621	0.670191835817193	0.863929309481355
Merged-chr11-109480622-3	chr11	109480516	109480716	+	986.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028710, intron 1 of 13)	intron (NM_028710, intron 1 of 13)	-5276.0	NM_001361975	74008.0	Mm.482224	NM_028710	ENSMUSG00000020604	Arsg	6330406P08Rik|AI846872|ASG	arylsulfatase G	protein-coding	4.19037250350481	4.3928358399701	4.73853008596382	4.87451762192557	4.16544113297388	4.42122678138634	4.22428931582872	4.8953732118646	-0.290751907913107	0.506569287112706	0.7723270012871
Merged-chr17-24169078-4	chr17	24168984	24169184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361535)	promoter-TSS (NM_001361535)	-275.0	NM_001361535	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	6.79208897023518	7.1129999851535	6.2345295326953	6.48174068318541	6.81629965163144	7.1281856201924	6.89189419604416	6.88350715629298	0.332939644978927	0.182408872623141	0.478890570391064
Merged-chr2-29889664-4	chr2	29889554	29889754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177661)	promoter-TSS (NM_001177661)	-66.0	NM_001177661	18286.0	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	7.94565567037721	8.13152889801114	7.76646226840037	7.49363294749707	8.11226877306395	8.2883945218808	7.92266040398996	7.8989100135764	0.279442181497892	0.167779352700524	0.459695448875569
Merged-chr11-32347801-4	chr11	32347692	32347892	+	988.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177364)	promoter-TSS (NM_177364)	-19.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	4.86453692818399	4.50951001455052	4.75011670943794	5.1470395815095	4.95895653674197	5.03890203298744	4.97998031012591	5.03342547576045	0.278559705505827	0.42374853740284	0.715604098407951
Merged-chr3-59312778-4	chr3	59312671	59312871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 42 of 43)	intron (NM_177855, intron 42 of 43)	31485.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	7.09667342206911	6.1692454381163	6.65256504545753	6.95847531304093	6.36766080558746	6.41148557197676	6.18015532772255	6.40237811420395	-0.619861856520147	0.0186794330141106	0.122328030408628
Merged-chr3-8098911-4	chr3	8098806	8099006	+	985.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa-int|LTR|ERVL-MaLR	-144019.0	NR_040587	75476.0	Mm.491752	NR_040587	ENSMUSG00000100010	1700010I02Rik	-	RIKEN cDNA 1700010I02 gene	ncRNA	4.90132022116119	5.03697103260454	5.01638242904925	5.41714571878519	5.25985683203969	5.45173400879046	5.39215580043667	5.1833317916307	0.345803364499545	0.278775718651932	0.591009603347969
Merged-chr6-50299197-4	chr6	50299084	50299284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027881, intron 21 of 21)	intron (NM_027881, intron 21 of 21)	-37415.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	5.61864734587772	5.15405790692258	5.34240291298237	5.36050849667963	5.57791275715231	5.35587318626122	5.75308972761466	5.6156479565642	0.365971949301684	0.19780694642298	0.499140586391181
Merged-chr2-71376673-6	chr2	71376636	71376836	+	959.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-9182.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	4.71612363971056	4.54466212200207	4.416551929321	4.30452143468133	4.97014867470051	5.03268473561084	4.7318882279899	4.92473041191205	0.915975201001939	0.00807728397667536	0.0676789871896145
Merged-chr11-3195757-4	chr11	3195644	3195844	+	991.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2281.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.17112638600764	4.90458710962829	5.17200995680647	4.92284022525894	5.21718103398935	5.68932953110384	5.07914179905921	5.80360252162351	0.79402583649335	0.0156363076610547	0.108003565551307
Merged-chr18-4922830-4	chr18	4922730	4922930	+	787.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110344.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	4.01401548609288	3.96670707687065	4.18511373471225	3.60329779027931	3.91359311629375	3.99181697577211	3.85366970259192	3.6458453001889	-0.247172742102896	0.601836854558001	0.827278696662623
Merged-chr1-24679169-4	chr1	24679092	24679292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310483, intron 1 of 15)	intron (NM_001310483, intron 1 of 15)	274.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	5.39719929054327	5.5826731686273	5.36669309506963	5.12003864525405	6.12197836161737	5.6360323228013	6.06506632574966	5.51284798988405	0.851823786831413	0.004191621523698	0.0415942323205492
Merged-chr7-129528503-4	chr7	129528414	129528614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63349.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	6.67900119634402	6.74060549000904	7.03721929543072	7.00439588328752	6.83146134865159	6.40463395337972	6.58367839455166	6.79215665374223	-0.294778922812164	0.180905623874958	0.477320812879393
Merged-chr18-34850288-4	chr18	34850207	34850407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9718.0	NM_144865	225362.0	Mm.293588	NM_144865	ENSMUSG00000038555	Reep2	-	receptor accessory protein 2	protein-coding	5.45075397254206	5.30521580106598	5.29515892356804	5.58886797992175	5.62088965077062	5.81669267285904	5.84367910802298	5.73634706388514	0.540580399179845	0.0469597781509869	0.222844310631453
Merged-chr4-139238758-3	chr4	139238649	139238849	+	906.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	44638.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	4.47317256447452	4.17093146556921	4.08062001920073	4.57072397537068	3.50377561513818	3.76909507828553	3.81138842211792	3.58046420949219	-1.9685565175288	4.26602861663191e-05	0.000985242215779503
Merged-chr19-32255153-3	chr19	32255025	32255225	+	937.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 3 of 9)	intron (NM_144792, intron 3 of 9)	-44112.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	3.88649427768728	3.73010529699289	4.14453682342735	4.38159878439244	3.52233478938035	3.5541171597702	3.49006906004201	3.50050926293013	-1.70827340720356	0.000851773132952024	0.0118299238693448
Merged-chr2-124576224-4	chr2	124576122	124576322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-34074.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	6.71012241887313	6.6667151347306	6.83505875604437	6.76311741058977	6.53029964226281	6.40185026135617	6.42274753299809	6.64737421572179	-0.34462312995095	0.0933316744350684	0.334150960948329
Merged-chr5-99254849-4	chr5	99254748	99254948	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1921.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.86235657473955	5.34607019171815	4.96913892100289	4.67073314649896	4.85445648796239	4.92374737199694	4.76481934036822	4.85991641788266	-0.252316931159965	0.472412902809895	0.750594388470848
Merged-chr7-19149797-4	chr7	19149671	19149871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026111)	promoter-TSS (NM_026111)	-67.0	NM_026943	107686.0	Mm.29135	NM_026943	ENSMUSG00000040824	Snrpd2	1810009A06Rik|SMD2	small nuclear ribonucleoprotein D2	protein-coding	6.3493888741396	6.99494024107115	6.04525566171	6.28098676975168	6.84119851954375	7.018428967641	6.82075206098008	6.79772462292582	0.573146669914887	0.0285712455066768	0.162252487946366
Merged-chr4-154942092-2	chr4	154941983	154942183	+	748.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-14006.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	3.07481512594683	2.65610377812549	2.86712939545573	3.05883039521016	2.47425792891821	2.41466503013911	2.3904075527915	2.61691561710246	-2.57539615396534	0.0014843241573529	0.0185128279649942
Merged-chr13-17993331-4	chr13	17993239	17993439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025904)	promoter-TSS (NM_025904)	12.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	6.79760671112689	6.93307386070617	6.98905136355234	6.98621458193747	7.18121442336235	6.88534710107056	7.27339475080266	6.97145058542174	0.221011214724779	0.263711347920433	0.57581589661491
Merged-chr2-48816584-4	chr2	48816470	48816670	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007396, intron 1 of 10)	intron (NM_007396, intron 1 of 10)	2461.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	4.92874011914631	4.94722315276927	5.04397693232858	5.49771513558118	5.56269197720626	5.10939496946482	5.70249073653093	5.33301315171837	0.538765320671869	0.112588013502244	0.371040985475911
Merged-chr12-102453718-4	chr12	102453613	102453813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13900.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	7.9560983551831	7.88100024606746	7.75444068315295	7.95175823679119	8.06903649332815	7.9637419472748	7.93986544114618	8.16233224112154	0.189176748901202	0.243603187853461	0.554650479735382
Merged-chr17-13306130-2	chr17	13306030	13306230	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CTGTG)n|Simple_repeat|Simple_repeat	-48442.0	NM_001167578	100041352.0	Mm.432087	NM_001167578	ENSMUSG00000052469	Tcp10c	D17Leh66C|D17Leh66ca|Gm9880|T66C-a|Tcp-10c	t-complex protein 10c	protein-coding	2.67579964934605	2.5410989961612	2.67606169218924	2.79088044838104	2.79077600365433	2.92530354049129	3.19649018760746	3.2572060399479	1.63172494715796	0.014596019653467	0.102799683484031
Merged-chr18-60733169-3	chr18	60733081	60733281	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348102)	promoter-TSS (NM_001348102)	-40.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	4.77077300771147	4.81332906990088	5.21527303875594	4.78998233700458	4.63294645450726	4.65377354764745	4.95678196131272	4.60688006754696	-0.380146115170782	0.278895177592172	0.591099328425239
Merged-chr9-110622827-4	chr9	110622708	110622908	+	842.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026012, intron 2 of 4)	intron (NM_026012, intron 2 of 4)	1585.0	NM_026012	67169.0	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	4.37034678768067	4.03146724224769	4.20231208231907	4.39852580630991	4.00610470788024	3.90125633756966	4.13835695616045	4.44463982133375	-0.322257557271761	0.450697573749014	0.735430242357605
Merged-chr3-95644980-2	chr3	95644897	95645097	+	900.791626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-13724.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	3.17240206491692	3.17081520201613	3.45734340682525	2.53319753307465	3.40970614006489	3.46882622914651	3.39034114822691	3.29220913741166	0.929341062907286	0.168133667728614	0.460132505488677
Merged-chr5-22923615-3	chr5	22923505	22923705	+	865.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359998, intron 1 of 3)	intron (NM_001359998, intron 1 of 3)	-176721.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	2.80783465562679	2.65733646066461	2.80811793358691	2.61413619577354	3.47299480962654	4.0624671552456	3.67646685262774	3.10349870176621	3.6618596550976	1.0772067201892e-07	4.58579528327434e-06
Merged-chr8-71310588-4	chr8	71310463	71310663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	RLTR17|LTR|ERVK	37849.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	7.10520929984475	7.35199133948139	6.70027210634335	6.70357091297789	7.03638203440601	7.23593763214117	7.0356054726711	7.0898307611231	0.151530536468775	0.50483370426777	0.771056761068507
Merged-chr2-127792476-4	chr2	127792387	127792587	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015476)	promoter-TSS (NR_015476)	1.0	NR_015476	67885.0	Mm.27359	NM_175125	ENSMUSG00000051319	1500011K16Rik	-	RIKEN cDNA 1500011K16 gene	ncRNA	5.5829327050244	5.78938567366415	5.5582581230752	5.59110615976928	5.45560264947951	5.34491503887304	5.06991788966447	5.19789258949274	-0.611849659261286	0.032499587894866	0.176537071010125
Merged-chr8-81010528-2	chr8	81010422	81010622	+	610.375	f0_c57.idr|f1_c57bl6.idr	intron (NM_027554, intron 2 of 9)	Tigger5|DNA|TcMar-Tigger	4384.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	3.51864739772457	3.22127238753536	3.39301232664265	3.14778505694566	3.89548738121958	4.26197268831241	3.86727328945145	3.73849471051737	2.01533356976533	5.1347478412656e-05	0.00115711439665049
Merged-chr2-124753844-4	chr2	124753735	124753935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	100254.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	6.45256197857885	6.25189565395869	6.84694347648416	6.64357544169746	5.67012919906731	6.05871190066031	6.12559190688649	6.43246275304749	-0.717626102680649	0.00810796624657568	0.0678482164901258
Merged-chr9-121536300-4	chr9	121536207	121536407	+	789.516663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2-int|LTR|ERVL-MaLR	-40613.0	NM_031161	12424.0	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	4.34323525484735	3.95466125849206	3.84698973959886	3.99791152391119	4.52841502558445	4.7026720149629	4.19474621914177	4.06625336122687	0.868637241054823	0.0446578592058194	0.215767909674434
Merged-chr9-120933398-4	chr9	120933284	120933484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165902)	promoter-TSS (NM_001165902)	-16.0	NM_007614	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	7.70664085580592	7.89302698115719	7.59680371703706	7.31371555658276	7.95158024411565	8.02445598051198	7.7261572005318	7.66954222916917	0.282786989858509	0.157115852696423	0.443500264079873
Merged-chr2-132121306-4	chr2	132121198	132121398	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	B3|SINE|B2	23810.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	4.06022632750977	4.77863132320374	4.55590635638114	4.06861735882779	4.6475377833801	4.24122464885232	4.41802053691074	4.11199800372396	-0.0483188218756116	0.913824124969111	0.967694418307962
Merged-chr11-9048541-4	chr11	9048422	9048622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037928)	promoter-TSS (NM_001037928)	-70.0	NM_001037928	626870.0	Mm.369429	NM_001037928	ENSMUSG00000040978	Gm11992	-	predicted gene 11992	protein-coding	5.6713456437639	5.25750861583488	5.62159005236076	5.39080832972962	5.5880909527477	5.44469477409532	5.90946225235743	5.85281037869739	0.382961304934509	0.177171167393721	0.472423260804587
Merged-chr4-149586896-5	chr4	149586836	149587036	+	757.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023051, intron 1 of 18)	CpG	468.0	NM_023051	65945.0	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	2.95467870092438	3.11591830865072	2.8189001117998	2.74064102924858	3.20326551373683	3.06464590309155	3.23009175445653	3.13435975470057	1.05049548347002	0.0729627128858114	0.290703215253242
Merged-chr9-70237776-1	chr9	70237676	70237876	+	827.0	f0_balb.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	30426.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	4.39495147484318	4.13371698277034	4.15050471211998	4.46407667830459	3.96008056542165	3.84786748352001	3.99084325915244	3.90035682763368	-0.991877064211658	0.0198969755316668	0.127635798609275
Merged-chr16-44172394-4	chr16	44172306	44172506	+	886.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029889)	promoter-TSS (NM_001029889)	-991.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	4.57272335467748	4.08777887566342	3.61784397335043	3.85544617469466	4.11251329908725	4.30908486055044	4.16234884440976	4.50113446094581	0.501737962234752	0.294177192493698	0.606522696834359
Merged-chr12-110974936-3	chr12	110974841	110975041	+	978.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3677.0	NM_001361917	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	3.55762737291852	3.91530004028889	3.72748538419774	4.13298295460494	3.48449010576205	3.8466269418712	3.95025382368689	3.49477750080149	-0.463792344125313	0.365889138382902	0.670510957016407
Merged-chr8-14678092-1	chr8	14677992	14678192	+	660.0	f0_balb.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-210444.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.22230365115813	3.53993928482415	3.48936061197209	2.99479110632435	2.93765473558347	3.21098079756798	3.21048364070995	3.16052222195361	-0.739838838403562	0.214286055054882	0.520071846452244
Merged-chr17-71004473-4	chr17	71004347	71004547	+	997.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-1914.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	5.63046112810627	5.8340131935612	5.71547815977308	4.83589247887754	6.35506665444433	6.53614734921965	6.31211522927904	6.42044495281078	1.37031449365248	7.23316775451781e-06	0.000206435303768574
Merged-chr6-67168493-4	chr6	67168420	67168620	+	836.145874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42|LTR|ERVK	-98459.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	4.1679681902504	3.79559381004304	3.94824590358729	4.00581103884052	3.91447835266203	3.96769249251021	3.97858778143386	3.73722226746045	-0.229647455332166	0.600145472573813	0.826731739315186
Merged-chr6-120357421-4	chr6	120357300	120357500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026028)	promoter-TSS (NM_026028)	69.0	NM_026028	67200.0	Mm.45767	NM_026028	ENSMUSG00000030177	Ccdc77	2400002C23Rik|2700091N06Rik|AV168274	coiled-coil domain containing 77	protein-coding	7.31224788421245	7.28960887235015	7.25030374491498	7.42641583113057	7.15412787986599	7.02424897951638	7.31735453409263	7.36854628967112	-0.142224236133558	0.443855749911187	0.730375449472541
Merged-chr4-119004429-3	chr4	119004315	119004515	+	916.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42448.0	NM_133892	100470.0	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	3.85725743623724	4.59251378650489	3.80078926555748	3.69104842242592	4.2890786013841	4.08996583184152	4.33984712359517	3.67727390732979	0.21627458565576	0.676932375882695	0.867354572468851
Merged-chr7-4227152-3	chr7	4227020	4227220	+	649.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10634.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	2.37128411469981	2.31863615793787	2.37147803255529	2.03479155204111	3.07393301693504	2.80805915441667	3.20372687221927	3.44001912720629	7.09134893220868	7.30014168634901e-12	6.70473271087273e-10
Merged-chr11-89028902-4	chr11	89028834	89029034	+	931.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29531.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	4.59569111250072	4.26413375154829	4.03913584177249	4.42778057078304	5.57375416827145	5.51978333993465	5.46454186947502	5.14869073448324	2.13583044168176	3.28801153630418e-09	1.919912823155e-07
Merged-chr13-85556313-3	chr13	85556203	85556403	+	822.438904	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-266817.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	3.98052604369697	4.31180688022182	4.6482708623214	4.29222521988757	4.05621834727365	4.15925612690172	4.1179632781557	4.27106456312089	-0.440140176337378	0.292621554774468	0.604987499921338
Merged-chr10-99204721-4	chr10	99204595	99204795	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58536.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	5.26932578167693	4.94728841494443	4.67856077699361	4.58578905782739	4.56828078196617	4.77125176176827	4.984115217412	5.03724144365305	-0.0781015816518784	0.833569631959239	0.936365732465896
Merged-chr12-71015362-1	chr12	71015262	71015462	+	1000.0	f0_c57.idr	promoter-TSS (NM_001081195)	promoter-TSS (NM_001081195)	461.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	6.0653290835208	5.87731819690717	6.00123403707872	6.02551971507462	6.22282195575784	6.3800667885328	6.13666363571982	6.22105294023355	0.379937217076832	0.0968067568240143	0.340781807318324
Merged-chr15-88837497-3	chr15	88837466	88837666	+	809.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	17920.0	NM_029720	76737.0	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	3.92507750631378	3.67957564877158	3.27343086383663	3.94951280034873	3.29653719562071	3.52251157391999	3.62526119140956	3.83507702453491	-0.487352858734495	0.374961742487831	0.678070908583733
Merged-chr6-97398563-4	chr6	97398470	97398670	+	978.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	60716.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	5.28126472545279	5.34540121745475	5.63420397143557	5.9577008518239	4.88619015501655	5.06594137148087	5.22459957149494	5.33940042599689	-0.841068667592766	0.0105404190404623	0.0820400751100128
Merged-chr3-94821411-3	chr3	94821283	94821483	+	661.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16184.0	NM_001165948	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	3.40552382990653	3.22303240877459	3.35503959093667	2.8533601174655	3.22045110845973	3.30194249132373	2.91940941836301	3.12638651570694	-0.264103898706321	0.663852744163387	0.860777383674392
Merged-chr13-37793127-3	chr13	37793006	37793206	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32932.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.5428610683369	6.05902106593127	5.17802385695265	5.57962806972888	5.35113198467776	4.65412244934204	4.44156961573982	4.71059792762688	-1.42614063145785	0.00046828946220648	0.00731936223768007
Merged-chr2-156720920-4	chr2	156720839	156721039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040505)	promoter-TSS (NR_040505)	-26.0	NM_001042488	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	7.69124334183981	7.88588542113779	7.19481022921767	7.18820801558109	7.84578498541789	7.94021401290666	7.51932659073174	7.32579684036493	0.210417297674158	0.380643202948686	0.682959506520613
Merged-chr19-11263747-4	chr19	11263678	11263878	+	931.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007641, intron 1 of 6)	intron (NM_007641, intron 1 of 6)	2373.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	4.87331896441405	4.56215057233917	4.70212521095286	4.6776204352326	4.55965034661764	4.58975991603303	4.39436704193124	4.54239892109821	-0.393924736517077	0.264448848366053	0.576455127446606
Merged-chr17-28257020-4	chr17	28256925	28257125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	-14683.0	NR_045427	69050.0	Mm.486938	NR_045427	ENSMUSG00000002250	1810013A23Rik	-	RIKEN cDNA 1810013A23 gene	ncRNA	6.34065948980801	6.40133174520938	6.35926999560365	6.15929282415253	6.35198533041103	6.26559502835473	5.96944047390891	6.04097386061983	-0.204461273432339	0.387177863658572	0.688130369231529
Merged-chr17-12250099-4	chr17	12249993	12250193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357722, intron 11 of 25)	RLTR44A|LTR|ERVK	68567.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	7.8815255893148	8.4426158525606	8.26040390909919	7.88737070556324	8.49832341677439	8.47203804815044	8.27183602492237	8.21431826414582	0.29778175401753	0.12410755790114	0.390964897713886
Merged-chr5-124112090-7	chr5	124112002	124112202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025671)	promoter-TSS (NM_025671)	-219.0	NM_001361482	66627.0	Mm.7050	NM_025671	ENSMUSG00000023707	Ogfod2	1300006G11Rik|5730405M13Rik|AU041636|AW552395	2-oxoglutarate and iron-dependent oxygenase domain containing 2	protein-coding	6.71049370518532	7.01484123316235	7.05723994819013	6.41485020154676	6.59619415323256	7.35464740940149	6.83469897325781	6.9175557113881	0.186889526652926	0.468287729920508	0.747594588615525
Merged-chr17-43030352-3	chr17	43030266	43030466	+	650.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 1 of 5)	intron (NM_178589, intron 1 of 5)	13811.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	3.58825483803393	3.1703199524077	3.54371617325735	3.416960970244	2.98833392788159	3.08337597081425	3.03329670661301	3.04145450009531	-1.61115363879596	0.00637888094663729	0.056776587082743
Merged-chr4-132336055-4	chr4	132335959	132336159	+	959.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133878, intron 4 of 9)	intron (NM_133878, intron 4 of 9)	-6521.0	NM_027925	71787.0	Mm.239183	NM_027925	ENSMUSG00000028898	Trnau1ap	1110007F05Rik|AA387999|Secp43|Trspap1|WI1-2643G14.2	tRNA selenocysteine 1 associated protein 1	protein-coding	4.94372924760435	4.8242649693523	5.01896293475298	4.4394748049685	5.77737521050582	5.16133323566588	5.31053608171941	5.67679664213438	1.32932649137616	8.38773806777188e-05	0.00175185096222399
Merged-chr11-69323282-3	chr11	69323167	69323367	+	860.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024206)	promoter-TSS (NM_001024206)	606.0	NM_172560	216846.0	Mm.28774	NM_172560	ENSMUSG00000032782	Cntrob	9830165K03Rik|Lip8|Nip2	centrobin, centrosomal BRCA2 interacting protein	protein-coding	3.73125103348717	3.30623031588161	3.48051164450432	3.39398307751592	3.49539457031272	3.47852167215595	3.4109681709565	3.63503020221365	0.0915676987190397	0.856525591378332	0.945996478792159
Merged-chr15-81081501-4	chr15	81081366	81081566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	23581.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	6.03648251582206	6.20562141016891	6.40295668048824	6.21794843146907	6.46538348287192	5.80140862626608	6.35343889365584	6.23852560082096	0.0430932553665911	0.864436246645768	0.949166333976076
Merged-chr6-52240580-3	chr6	52240485	52240685	+	826.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001122950, exon 1 of 2)	5' UTR (NM_001122950, exon 1 of 2)	269.0	NM_001122950	15395.0	Mm.5	NM_008263	ENSMUSG00000000938	Hoxa10	Hox-1.8|Hoxa-10	homeobox A10	protein-coding	3.50696220954226	3.49185209061	3.23436401080501	3.43469566678627	3.12208327769474	3.46445773481765	3.16154430576407	3.10542059805944	-0.760662953178305	0.167503569745837	0.459184925512765
Merged-chr8-104115709-3	chr8	104115591	104115791	+	853.8666380000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 2 of 11)	MTE-int|LTR|ERVL-MaLR	-9818.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	3.37166368377568	3.33219661709577	3.80545027122282	3.22049220949128	4.22901059379697	4.0827693581802	4.36962049155298	3.99970192463775	2.20092710681957	5.62950530263267e-06	0.000164762564940827
Merged-chr9-74825279-1	chr9	74825179	74825379	+	767.666687	f0_balb.idr	Intergenic	Intergenic	-23158.0	NR_045284	100503019.0	Mm.482658	NR_045284	ENSMUSG00000066477	Gm16551	-	predicted gene 16551	ncRNA	3.5568880088978	3.1867715470839	3.46268734281019	3.5200108491521	3.11526957628888	3.10131699598178	3.17758579397089	2.91852214187422	-1.39104282005838	0.0173800125477905	0.116410267539209
Merged-chr16-38619220-4	chr16	38619107	38619307	+	780.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 7 of 11)	intron (NM_020260, intron 7 of 11)	56393.0	NM_026407	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	3.64118325083441	3.56907277219503	3.70178960046845	3.5877627979598	4.05572680399085	4.39561587105081	3.90162544124155	4.30119616324414	1.53061582829414	0.000597743844918224	0.00891032652092864
Merged-chr7-19084658-4	chr7	19084545	19084745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032418, intron 1 of 14)	intron (NM_032418, intron 1 of 14)	796.0	NM_001190491	13400.0	Mm.6529	NM_032418	ENSMUSG00000030409	Dmpk	DM|DMK|Dm15|MDPK|MT-PK	dystrophia myotonica-protein kinase	protein-coding	7.21017430868113	7.73918233626441	7.24674660991434	7.79436221223804	7.84740954062711	7.74073878657789	7.83530468357544	7.67842593928553	0.312979088876814	0.130927324473232	0.402838939598867
Merged-chr12-102437691-2	chr12	102437608	102437808	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_011175, intron 1 of 13)	B1_Mur2|SINE|Alu	2105.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.32685536969391	5.50373410843132	5.53208789280966	5.38595692830656	5.74840853053439	5.70581568365562	5.42132209651845	5.44469654252231	0.274137533051107	0.318656825463825	0.630519394537282
Merged-chr2-11501458-4	chr2	11501343	11501543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	CpG	647.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	7.94512845106999	8.09923887435552	8.26607799950647	8.22487850507648	7.92241152689483	7.95622789361103	8.28112894065678	7.82133488914907	-0.175172053102864	0.330054443997032	0.641433224839941
Merged-chr18-36727706-4	chr18	36727595	36727795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009841)	promoter-TSS (NM_009841)	-880.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	6.00535904821118	5.82368083533436	6.24999505942349	5.98375263869103	5.93990988005357	6.4246559128109	6.30647539477376	6.31717596863698	0.354256543588537	0.157041165904089	0.443408387499825
Merged-chr1-128632788-4	chr1	128632745	128632945	+	956.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40546.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	4.83924467132726	4.03983570189237	5.26278904736008	4.58071542942415	4.51132097095069	4.67232070867863	4.33710103594556	4.57715409383442	-0.470004091616765	0.289276390967393	0.601285020227429
Merged-chr2-173546503-4	chr2	173546425	173546625	+	801.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23933.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	3.99753505634048	3.92620802501561	4.09143567607464	4.1902903307635	3.90784258087768	3.84939116946222	4.15937106070536	3.99576083751709	-0.221676044572435	0.604198296049034	0.828412962100285
Merged-chr15-25364833-4	chr15	25364823	25365023	+	805.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	48841.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	3.04284850840304	2.92801494295248	2.98395853579833	2.69980205528986	2.71128457823499	3.42241449384474	2.63367653802695	2.85531342933168	0.104024907554814	0.878963224624707	0.954735593859446
Merged-chr7-80583095-4	chr7	80583021	80583221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48002.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	5.20590618829477	5.07612924029163	5.11170328573831	4.7714477382673	5.49894533073429	4.91290667364065	4.98478175491983	5.40034774025775	0.375727087920169	0.263767623896247	0.575839660193672
Merged-chr7-140857403-4	chr7	140857356	140857556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053194)	promoter-TSS (NM_053194)	59.0	NM_053194	101489.0	Mm.281916	NM_053194	ENSMUSG00000025485	Ric8a	AI114950|RIC-8|Ric8	RIC8 guanine nucleotide exchange factor A	protein-coding	6.028912496444	5.98529083754791	6.05139266551577	5.96975061873866	6.26766730489886	6.04593746360584	6.30280676526267	5.95921527562005	0.239124591319365	0.309664188737439	0.621833440934041
Merged-chr7-27167171-4	chr7	27167079	27167279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053208)	promoter-TSS (NM_053208)	-377.0	NM_053208	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	7.81508463678107	7.82070541812806	7.66088262277778	7.8637547374341	7.8940841240713	8.10424637713757	7.98985564715693	7.96304503882866	0.245096467400081	0.131326301174307	0.403438704846182
Merged-chr6-4903606-3	chr6	4903537	4903737	+	960.380981	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 1 of 15)	CpG	317.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	4.12040534923525	4.11338604983703	4.07369550080448	4.38906951655777	4.07733873203494	4.14738811030701	4.10329841156897	4.0222479319854	-0.282610690973659	0.493365950221991	0.764142062450997
Merged-chr18-36699733-4	chr18	36699643	36699843	+	960.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3818.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	6.07985858981018	5.09417121439328	6.06212675778971	6.20379217442465	5.47808226874338	5.05371055335407	5.66030956580875	5.89611640770652	-0.613056186278097	0.0901821599982393	0.327855149216746
Merged-chr10-121463829-5	chr10	121463680	121463880	+	839.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	RMER19B|LTR|ERVK	12470.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	3.59458806079008	3.22080886292366	3.23458050634743	3.01079616045684	2.98703758624779	3.00960190798553	3.33452995278216	3.49999539215524	-0.192534801918428	0.749924246972472	0.901564247164595
Merged-chr9-56075438-4	chr9	56075343	56075543	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14533.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	4.75592097189622	4.66214243461794	4.16133349343274	4.45524970772282	4.69912498182393	4.44270177915907	4.47273740096345	4.53145058165941	0.0503697293134066	0.894883467598557	0.96069135232764
Merged-chr11-75325451-4	chr11	75325255	75325455	+	726.214294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026653, intron 5 of 16)	intron (NM_026653, intron 5 of 16)	23028.0	NM_001164223	68275.0	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	2.73853058896121	2.72793195387629	2.87876198121928	2.53101731289966	3.11050179859857	3.23600304624714	3.05220063223544	3.22545196148569	2.01443399648543	0.00100729650168474	0.0135254400478057
Merged-chr5-31758961-4	chr5	31758853	31759053	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 3 of 11)	intron (NM_144541, intron 3 of 11)	60903.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	5.56692884178378	5.76522199553374	5.1586096084223	5.76493614277602	5.91859970241338	5.2646672997173	5.69097800743366	5.59062444491218	0.0846205595345287	0.784356621324567	0.916037211827676
Merged-chr1-88705308-4	chr1	88705182	88705382	+	933.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3091.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	4.49654750293853	4.73551706758408	4.77002081316731	4.30275075926923	4.40206747023444	4.83216390359713	4.67546876142139	4.61832433152339	0.124030816736667	0.741884399026916	0.898417179766546
Merged-chr3-109448462-4	chr3	109448360	109448560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	L3|LINE|CR1	107777.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	6.66563425537269	6.49695183478623	6.46014358205645	6.18136496248469	6.58343690097308	6.67040483292578	6.44417960076022	6.73321515592821	0.240725159513198	0.287511253727851	0.599348763482052
Merged-chr6-31169562-4	chr6	31169450	31169650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	48924.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	6.35273866001624	7.15682905095949	6.3357735035641	5.95513241636526	6.47809300101124	6.39892787749953	6.16933322974205	5.71022939885352	-0.450603662278941	0.172592754316893	0.466103417317033
Merged-chr18-75599947-4	chr18	75599858	75600058	+	981.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 6 of 11)	RMER1C|Other|Other	85313.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	5.07157580382547	5.16934920319658	4.99752266019323	5.28955612688349	5.58708852634095	5.59377206570203	5.33749540914197	5.54845313343688	0.657468895231329	0.0233976128674908	0.141968607629952
Merged-chr10-61146957-4	chr10	61146899	61147099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316674, intron 1 of 14)	(CAGCT)n|Simple_repeat|Simple_repeat	685.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	5.58446214639975	5.53286846445746	6.03490155938898	5.45369334885886	5.42887113446627	5.28228631338322	5.77809708174059	5.95276949430376	-0.0434423056625851	0.888432252245523	0.958180162421076
Merged-chr1-134344800-2	chr1	134344700	134344900	+	962.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11872.0	NM_001144855	68507.0	Mm.295105	NM_001144855	ENSMUSG00000026458	Ppfia4	100042382|1110008G13Rik|AI448359|AI852265|C81506|Gm3812	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4	protein-coding	3.58078690080916	3.57237774319909	3.47407995498363	3.11692657690481	3.54526403346309	3.53244386541571	3.46048626953842	3.57920754800569	0.315293963418163	0.545820368272383	0.795995492404113
Merged-chr12-32693117-3	chr12	32693006	32693206	+	878.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127229.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	4.05571350088671	3.64601536966061	3.20867412330298	3.59572761261694	3.65490328376846	3.76702161350717	3.52315049609793	3.74874044629224	0.0560283073302856	0.916156730193736	0.968918528564949
Merged-chr1-174042255-2	chr1	174042135	174042335	+	710.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146717, exon 1 of 1)	exon (NM_146717, exon 1 of 1)	302.0	NM_146717	258712.0	Mm.223146	NM_146717	ENSMUSG00000045381	Olfr433	MOR123-1	olfactory receptor 433	protein-coding	2.0586501339287	2.32976139019503	2.28381662094886	2.15725463172741	2.24150623575464	2.45529285131891	2.40588352583358	2.41390205985479	1.02340796118378	0.171630625712277	0.465028642110941
Merged-chr9-36970805-4	chr9	36970678	36970878	+	708.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148950, intron 2 of 11)	intron (NM_148950, intron 2 of 11)	137204.0	NM_001357611	235180.0	Mm.5264	NM_183171	ENSMUSG00000032118	Fez1	UNC-76|UNC76	fasciculation and elongation protein zeta 1 (zygin I)	protein-coding	3.48923323962072	3.40644306056405	3.63982086397758	3.36822168337898	3.56102409394445	3.36990632249259	3.11541054270724	3.48775384428454	-0.250883972711689	0.638147821702075	0.847040716325261
Merged-chr19-34621105-4	chr19	34621020	34621220	+	955.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053217, intron 2 of 2)	MTD|LTR|ERVL-MaLR	8691.0	NM_001362130	112419.0	Mm.440727	NM_053217	ENSMUSG00000067297	Ifit1bl2	2010002M12Rik|AW412491|Ifit1b	interferon induced protein with tetratricopeptide repeats 1B like 2	protein-coding	3.71361619311897	4.17455409354146	4.37201021720394	3.55319186582902	4.44480184078502	4.16329503723835	3.81549850636444	3.77167220757239	0.237619525723255	0.647974769494971	0.851923231151848
Merged-chr6-108660115-1	chr6	108660015	108660215	+	1000.0	f0_c57.idr	promoter-TSS (NM_011498)	promoter-TSS (NM_011498)	-514.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	7.0927098727877	7.30877297602027	7.19640649439615	7.06950192085564	7.15080054709391	7.07938703081757	7.11600467698137	6.88327092987955	-0.13859411411862	0.466240539632421	0.746318952815707
Merged-chr10-108162075-4	chr10	108161977	108162177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027892)	promoter-TSS (NM_027892)	-323.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	8.220094848484	8.21463337081645	8.46065304493174	8.46674347479967	8.55978009452308	8.58678989145601	8.77144377848916	8.6855455827081	0.38028183916009	0.0165195018618916	0.112348712309152
Merged-chr8-106388000-1	chr8	106387900	106388100	+	592.333313	f0_balb.idr	Intergenic	Intergenic	-27339.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	3.33089879566217	3.0551731530875	3.3822126499088	3.06167444951883	2.88699193895279	3.08563791017163	3.03156265655957	3.32939737914214	-0.473029152820347	0.424791483912358	0.716481434880637
Merged-chr3-58556832-2	chr3	58556688	58556888	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005509, intron 13 of 13)	intron (NM_001005509, intron 13 of 13)	-19848.0	NM_001040396	69227.0	Mm.270950	NM_001040396	ENSMUSG00000075700	Selenot	2810407C02Rik|5730408P04Rik|Selt	selenoprotein T	protein-coding	2.40472335039165	2.42675217827509	2.40491263788517	2.13127761429422	3.06136014547293	3.14852900656205	3.12143013495887	3.18511764048449	5.39961044005993	3.23402838600296e-10	2.2927779530608e-08
Merged-chr2-131517745-4	chr2	131517646	131517846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177840, intron 3 of 3)	intron (NM_001177840, intron 3 of 3)	25884.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	5.73824551840343	5.75322761436938	5.6382038015155	5.65984331774024	6.02939990577338	5.52267850152741	5.75746330748554	5.43560464125774	0.0468052119427671	0.866401108315321	0.949955850585857
Merged-chr6-89277783-4	chr6	89277691	89277891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131021, intron 1 of 3)	intron (NR_131021, intron 1 of 3)	7934.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	6.58597761654936	6.79583767343816	6.79960757211741	6.02637651292537	6.48560003318456	6.77817639833187	6.29867719210789	5.98146540552304	-0.234742517558045	0.413488869665441	0.708447050209811
Merged-chr13-45966713-4	chr13	45966615	45966815	+	868.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1724.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	4.00307437867593	4.3007401985534	4.10884327578407	3.99912865421669	4.49073536134757	4.3334820081978	4.64926237530953	4.24977070378164	0.824648911000774	0.0368282841791289	0.191119892066653
Merged-chr15-97927993-4	chr15	97927902	97928102	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19706.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	5.50899396014317	5.71802283615702	5.32478702457654	5.51785709131321	5.95070135050188	5.56732579266094	5.91309384548865	5.6926821676922	0.452824426177086	0.0949300593412608	0.337167022691861
Merged-chr16-43966018-4	chr16	43965938	43966138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13012.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	7.41281880094646	7.09953925061888	7.64913957460613	7.88816166379709	6.89833855531022	6.91078469345782	7.3285586653572	7.28841787270945	-0.584065989774931	0.0135719941688633	0.0978764916864766
Merged-chr11-32321386-4	chr11	32321284	32321484	+	743.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21315.0	NM_175000	216635.0	Mm.338482	NM_175000	ENSMUSG00000020295	Hbq1a	A230090E05Rik|Gm876|Hbq1|Hbqt2	hemoglobin, theta 1A	protein-coding	3.80789780140553	3.75031813974879	3.58753337470007	3.67515675742634	4.11910348370889	3.92860951430044	3.93489195085318	3.6444213679378	0.633503361271534	0.164944558079847	0.455273332540928
Merged-chr10-98608633-4	chr10	98608533	98608733	+	978.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-256766.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	5.13689816615668	5.74779798074694	5.28605615596922	5.74106357877473	6.18492623018272	5.56748095606298	5.8612232625332	6.26234560943506	0.781612679316028	0.0130806263752021	0.0954352095900483
Merged-chr2-25553396-2	chr2	25553296	25553496	+	935.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-4504.0	NM_021519	59022.0	Mm.29945	NM_021519	ENSMUSG00000015092	Edf1	0610008L11Rik|AA409425	endothelial differentiation-related factor 1	protein-coding	2.63814052965932	2.66371142890357	2.34427279174414	2.35781664034083	2.66102853718015	2.81168908603722	2.91979019154515	2.70159111693225	1.37907151475758	0.0451469901223213	0.217291068355988
Merged-chr6-39259379-4	chr6	39259255	39259455	+	893.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52582.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	4.62760053020566	4.49847003434623	4.74102820992424	5.12788744128054	4.36155923580969	4.34432542170949	4.56725774966792	4.66395783305607	-0.659983598923667	0.0887988193409109	0.325167772500602
Merged-chr17-28079881-4	chr17	28079759	28079959	+	859.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357681, intron 2 of 9)	CpG	725.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	4.11551302077674	3.94181958410226	4.11616851865805	3.57352350239697	4.06639234332401	4.00535319362444	3.91630861939031	3.59708947121163	-0.0850241075572092	0.860124601980387	0.947123023003096
Merged-chr18-24045859-4	chr18	24045760	24045960	+	808.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-25047.0	NM_021559	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	3.99224353080114	3.65956449586233	3.52191433914009	3.80051612970658	3.77683328583477	3.87192441963237	3.97484632622584	3.80213909526499	0.286941967111106	0.53337811902275	0.788683474267955
Merged-chr11-5759125-3	chr11	5759022	5759222	+	701.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	Lx8b|LINE|L1	-3028.0	NR_015577	76508.0	Mm.260203	NR_015577	ENSMUSG00000083844	Ube2d-ps	1600028I17Rik|2210015D19Rik|AI596465	ubiquitin-conjugating enzyme E2D, pseudogene	ncRNA	3.08065378676817	2.981823976267	3.19663361607492	3.37108149730285	2.94655032018988	3.06155880924722	3.12847636254454	3.13850481344729	-0.435752573002822	0.455437258173243	0.738955495643786
Merged-chr7-74555006-4	chr7	74554880	74555080	+	979.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023908)	promoter-TSS (NM_023908)	-200.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	4.77109138128958	4.13091275586086	4.94041530565616	4.55968251652676	4.77611689661357	4.79306199617558	4.81842938506492	4.57450003875433	0.253111355045279	0.50966611191098	0.774132584192743
Merged-chr11-117848489-4	chr11	117848424	117848624	+	925.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009689)	promoter-TSS (NM_009689)	-713.0	NM_001012273	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	4.27801068002883	3.75824191161501	4.1495033631659	4.00900512416758	4.30179577785087	4.12963091019145	3.88492394823524	4.316140935085	0.303499940885762	0.485676883378558	0.759479653807337
Merged-chr2-28539377-3	chr2	28539261	28539461	+	872.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 1 of 17)	intron (NM_001145836, intron 1 of 17)	5897.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	3.68614449699596	3.355697682554	3.63828058970229	3.26504621900223	3.52395064412838	3.47886384210901	3.35216178030407	3.63609140419278	0.0549230469983048	0.915727874974957	0.968763998229684
Merged-chr15-78778645-4	chr15	78778480	78778680	+	890.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130859, intron 17 of 20)	intron (NM_130859, intron 17 of 20)	-5135.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	3.2150497628075	3.39294609418666	3.15309027579596	3.04409958468167	3.53863909458264	3.3274300521761	3.31889110562456	3.33007484274983	0.684698720744676	0.201141304198736	0.503376587144427
Merged-chr7-38074023-4	chr7	38073932	38074132	+	874.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33458.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	4.02025933916221	3.81942605606044	4.06863956139691	4.15356092430575	4.12306474345837	3.98755880963911	3.79548148767701	4.42959989908431	0.205545814985456	0.644491343845996	0.850278939865327
Merged-chr10-10287669-4	chr10	10287474	10287674	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	184740.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	5.12082080070058	4.77358820135655	5.0329136845051	5.20737854342269	4.64289589181442	4.54452563987183	4.39345169767409	4.55073303991202	-1.06850060987661	0.00240532791130773	0.026940808087958
Merged-chr8-111337772-7	chr8	111337697	111337897	+	952.7023929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310613, intron 1 of 10)	intron (NM_001310613, intron 1 of 10)	408.0	NM_001310613	74568.0	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	4.34391721514002	4.87214398974421	4.53031038084315	4.42293417644706	4.93231130220669	4.86527191189832	4.84677586575628	4.48346407486723	0.515959864480066	0.162488907614628	0.451742571052293
Merged-chr4-152131661-4	chr4	152131554	152131754	+	823.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207688, intron 3 of 10)	CpG-10714	-2729.0	NM_019585	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	4.07408579753841	4.42339793905608	4.12394059149383	4.30434306894025	4.09763579476372	4.38800859147625	4.1986209380201	4.07230769268059	-0.142586106775944	0.725498469848718	0.890921883682774
Merged-chr3-105802702-4	chr3	105802589	105802789	+	862.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1308.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	4.16761904189844	4.16643380288778	4.30594655414655	4.07470532852627	4.51578819258485	4.47711837107184	4.24282691320152	4.30324448208694	0.542458166384731	0.158438821214756	0.445258877733936
Merged-chr12-83688635-4	chr12	83688538	83688738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008943)	promoter-TSS (NM_008943)	75.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	6.55066251164533	6.59692642395045	6.17720561699687	6.03990829434948	6.43908464696703	6.54526949053795	6.24488959565307	6.32880525233111	0.0650854094595587	0.792716984876381	0.919674706477531
Merged-chr5-53998369-4	chr5	53998265	53998465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081103)	promoter-TSS (NM_001081103)	-158.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	8.57745788490073	8.48698140872409	8.56453112823439	8.84651391652324	8.76681501151954	8.77545551446807	8.76371735554122	8.69927098090755	0.147619384503356	0.344556260183015	0.653011956321506
Merged-chr5-36742635-4	chr5	36742501	36742701	+	850.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6078.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	4.14118503061858	4.15180299035153	3.79422126358078	4.28399069882691	4.15086800853067	3.59189274164735	3.93845536637362	4.13923512040597	-0.350234484664421	0.455129725358189	0.738750312899539
Merged-chr5-36562975-1	chr5	36562875	36563075	+	1000.0	f0_balb.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	19422.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	5.90301523270311	5.75112974271838	5.49697857031769	5.44762785543724	5.06903948436069	5.75361377207261	5.41196100586072	5.6013202193938	-0.314959119686552	0.307396297120095	0.619662574487691
Merged-chr3-51518627-4	chr3	51518516	51518716	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_080793, exon 8 of 8)	3' UTR (NM_080793, exon 8 of 8)	34650.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	5.41314115835397	5.59278941076521	5.49473797425924	5.71683058852188	4.8532843806905	5.13080195641029	5.04041621535481	5.23183045379837	-0.933712654678498	0.00174996926840872	0.0210870259956094
Merged-chr12-85647498-4	chr12	85647388	85647588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-39232.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	6.01350310559241	5.98736877489495	6.17673538884442	6.13548783069812	6.08010897553661	5.63536250774284	6.33740709566182	5.92069383408831	-0.0910213066679962	0.72498270219121	0.890570784916989
Merged-chr6-39527476-4	chr6	39527363	39527563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172477, intron 1 of 18)	intron (NM_172477, intron 1 of 18)	30371.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	6.61784977850826	6.94943429615942	6.84678575259487	7.00584569304269	7.10161076045164	6.78027437439069	7.14941119651465	6.93552662015925	0.182104859598359	0.381288464284076	0.683560179285592
Merged-chr12-8901259-4	chr12	8901124	8901324	+	938.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20083.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	3.89737641433044	4.00640160343068	4.48651783161182	3.80266405702772	3.76287270926784	3.84913212164151	4.16482013442555	4.18142544937891	-0.179180827138726	0.704859186089716	0.881499008770692
Merged-chr5-19724162-3	chr5	19724040	19724240	+	863.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 2 of 22)	intron (NM_001170746, intron 2 of 22)	-183378.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	3.07512337218017	3.34104329651295	3.52395022741416	3.10246625938972	3.6213063891896	3.84679171987748	3.61272466936533	3.67557631897894	1.43279546120533	0.0058078463464502	0.0530539906434778
Merged-chr16-91853717-4	chr16	91853570	91853770	+	988.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 21 of 28)	intron (NM_001110275, intron 21 of 28)	77960.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	4.62100738623186	4.49245762975425	4.45444122478003	4.70613528165968	4.51436220715232	4.49169703224338	4.60022713072489	4.95950014460255	0.152518876502497	0.67671164032823	0.867245059450191
Merged-chr13-5866425-4	chr13	5866332	5866532	+	847.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011803, intron 2 of 3)	intron (NM_011803, intron 2 of 3)	4943.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	4.7699967380256	4.27391672445363	4.07934542078204	3.93661315532068	4.17535797317292	4.25623455518799	4.01077822707602	4.26610538663111	-0.281423110635796	0.53160550815921	0.787495285437344
Merged-chr15-81523415-4	chr15	81523324	81523524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57108.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	6.55134968169187	6.22873792159376	6.22895150625299	6.04820739668822	6.17917261478513	6.44266260534502	6.34337072355803	6.24382805964019	0.0577580184648439	0.808827117368857	0.92615112212231
Merged-chr17-35023880-4	chr17	35023770	35023970	+	933.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347347, exon 13 of 17)	exon (NM_001347347, exon 13 of 17)	4146.0	NR_028258	78376.0	Mm.390966	NM_023893	ENSMUSG00000036185	Sapcd1	2810436B06Rik|G7d|Ng23	suppressor APC domain containing 1	protein-coding	5.02348438662899	5.44493226353274	4.79144065808482	5.44034505793223	5.31745105428926	5.12793706473735	4.81086266779282	5.24791601060871	-0.138870219892578	0.688669487400876	0.872934600557885
Merged-chr17-80621126-4	chr17	80620994	80621194	+	758.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290345, intron 16 of 33)	ID_B1|SINE|B4	-43281.0	NM_001360144	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	3.46375257123743	3.60428274908971	3.64078223489304	3.73745199255484	3.80046464442897	3.64179091062661	4.00059968802914	3.84190035140264	0.602886493716773	0.199880621154594	0.50185984431534
Merged-chr2-16310855-3	chr2	16310755	16310955	+	906.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45449.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	3.89854942951544	3.35560708699534	3.85232810218457	4.12534604651962	3.26862257183687	3.82071962776679	3.63146567318874	3.84995823363707	-0.545729109849055	0.321178231834897	0.632922075409085
Merged-chr11-88955474-4	chr11	88955386	88955586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029023)	promoter-TSS (NM_029023)	-44.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	7.27141288171879	7.46653994627187	6.78740085952669	7.24497954015358	7.66843029950829	7.46094354958303	7.73138465293457	7.50479053476627	0.504759822544222	0.014331819349031	0.10155545738623
Merged-chr4-45883429-3	chr4	45883328	45883528	+	686.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305421, intron 17 of 18)	intron (NM_001305421, intron 17 of 18)	-6875.0	NM_198660	381522.0	Mm.54220	NM_198660	ENSMUSG00000035539	Ccdc180	E230008N13Rik|Gm1025	coiled-coil domain containing 180	protein-coding	3.70882919262012	3.29364679306322	3.37530079839756	3.85471485668299	2.79213990367797	2.95757775384706	3.05964815186745	3.13492994971919	-2.50197634158445	0.000157743979507194	0.00297747513056022
Merged-chr11-72796153-4	chr11	72796056	72796256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045536)	promoter-TSS (NM_001045536)	-70.0	NM_001045536	195018.0	Mm.272030	NM_001045536	ENSMUSG00000055670	Zzef1	8430405D05Rik|BC051585|C130099L13Rik|C85424|NSPA|mKIAA0399	zinc finger, ZZ-type with EF hand domain 1	protein-coding	7.12291907513581	7.16143834541822	6.38490920089933	6.62116661064587	7.13007350457783	7.09482058114403	6.90893599568916	7.06199655417129	0.269031120512869	0.262668265048696	0.574445092878026
Merged-chr3-122122266-4	chr3	122122169	122122369	+	958.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007378, intron 19 of 49)	intron (NM_007378, intron 19 of 49)	77809.0	NM_007378	11304.0	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	4.94339123584788	5.09799418474398	4.5715518101772	4.87564134654579	4.46688804341192	4.56701494065457	4.98229063595306	4.38355993025553	-0.56684205662983	0.130389034983084	0.40193242336713
Merged-chr7-46059112-4	chr7	46058997	46059197	+	950.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153057, intron 15 of 30)	intron (NM_153057, intron 15 of 30)	25401.0	NM_153057	211548.0	Mm.274811	NM_153057	ENSMUSG00000030835	Nomo1	D7Ertd156e|Nomo|pM5	nodal modulator 1	protein-coding	3.90072318851068	3.89707832727136	4.10466932198523	4.10090512273466	4.03710543634681	3.96737888602619	4.30039180656865	4.53548627896891	0.5524470484857	0.200691061916564	0.502868627315772
Merged-chr7-37490507-4	chr7	37490409	37490609	+	925.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172385, intron 5 of 5)	intron (NM_172385, intron 5 of 5)	279243.0	NM_172385	243937.0	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	4.54510236039767	5.00004247250935	4.63184996501465	4.79266142650004	5.18831277652621	4.6328342729119	4.52550464010728	4.82153903444094	0.151480006812651	0.686128440483917	0.871774647810045
Merged-chr1-92697047-4	chr1	92696952	92697152	+	840.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48211.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	3.78001830205944	3.691832983184	3.78052985167853	3.75984559597254	4.17255653602848	4.05866382150286	4.09938835013981	4.02802982823178	0.941359530833092	0.0255596298517866	0.150767290396977
Merged-chr4-45587401-3	chr4	45587281	45587481	+	602.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52555.0	NR_151513	100040557.0	Mm.383510	NR_151513	ENSMUSG00000085980	Gm12408	-	predicted gene 12408	ncRNA	3.59511403764721	3.4171349900692	3.5390027850927	3.80906498079105	3.70926006197137	3.53313131483643	3.52577689787501	4.09039118276948	0.385369048958391	0.453071770842127	0.737250667901997
Merged-chr10-127619377-4	chr10	127619286	127619486	+	926.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	1762.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	4.56125506541891	4.81092003010629	5.79831901547846	5.36142362850619	4.52402876003603	4.64964806749782	5.17333076456004	4.97016223468148	-0.707457588732366	0.0987583658993256	0.344466199164409
Merged-chr2-166703133-3	chr2	166703027	166703227	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	10705.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	5.06316200830875	5.09264386300572	5.34524747466369	4.85847578953075	5.25623393336518	4.65735656536371	4.35270842532331	4.56690795814055	-0.637494047631411	0.11160134260705	0.369150028864662
Merged-chr13-113484324-4	chr13	113484227	113484427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 3 of 6)	intron (NR_045501, intron 3 of 6)	18517.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	6.50949030505	7.08906983883778	6.61116253559028	6.4800879995104	6.83811019201838	6.91021175664761	6.93719371431194	6.54036982436563	0.173194548823005	0.466009937921839	0.746263717184356
Merged-chr17-70831815-4	chr17	70831726	70831926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	14951.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	7.05686956422265	6.88936915071003	7.27462077701701	6.98161606025654	6.73924393387539	7.00047948967743	6.94938382261309	7.00467625671252	-0.183155943514261	0.364028818206316	0.668959979169087
Merged-chr5-101959640-4	chr5	101959552	101959752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 6 of 66)	intron (NM_172882, intron 6 of 66)	110269.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.97074574874957	6.0753906216419	6.412734920065	6.45623883602854	6.0221882313724	6.24183763771953	6.6643989633754	6.47397524785104	0.166731461924055	0.528525917215928	0.785121967865949
Merged-chr5-24781268-4	chr5	24781162	24781362	+	972.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-23419.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	5.2200112378963	4.79972903248937	4.98730637881223	5.14692045997799	5.06640093132903	5.2336300560502	5.22489831568695	5.51405445660827	0.392667020141471	0.214046853548879	0.519703949677842
Merged-chr11-87442884-4	chr11	87442793	87442993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	CpG	15302.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	6.88551940448348	6.98602477001989	6.75139512474309	6.1650195221625	6.77906427317149	6.82381222756089	6.688196506252	6.54565306399595	-0.00845412443981347	0.973431418031342	0.990485651958264
Merged-chr7-118855751-4	chr7	118855657	118855857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168220)	promoter-TSS (NM_001168220)	-18.0	NM_001081446	434232.0	Mm.458509	NM_001081446	ENSMUSG00000073856	Iqck	A230094G09Rik	IQ motif containing K	protein-coding	6.96521468313528	7.04193695963531	6.62495470930229	6.87165080450017	7.18610073903887	7.40055943342803	7.41843860020852	6.94843799317307	0.498667163493496	0.0174833369146206	0.1168494308212
Merged-chr8-57576376-4	chr8	57576229	57576429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 2 of 11)	Tigger9a|DNA|TcMar-Tigger	64486.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	7.38747018812691	7.52679082451825	7.29319238054108	7.36684935978091	7.8867051535737	7.81532354917606	7.82197244207368	7.33145612654172	0.448210633402585	0.0208215289446748	0.131561570660613
Merged-chr19-44931570-4	chr19	44931444	44931644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172638, intron 1 of 19)	CpG	425.0	NM_001081225	226151.0	Mm.212609	NM_172638	ENSMUSG00000036097	Slf2	3632432H19|Fam178a	SMC5-SMC6 complex localization factor 2	protein-coding	5.40889751548287	5.45853790809891	5.40982369226772	5.69569247366537	5.76605632249085	5.55550561801259	5.4125418058602	5.7235888605973	0.191776293932381	0.491768530228483	0.763187446051088
Merged-chr2-103672812-4	chr2	103672649	103672849	+	880.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	88521.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	4.09269485715035	3.96344822990103	4.09332488235174	3.87068986804273	3.97067839084878	3.97542875127501	3.78714342749312	3.85288949402091	-0.269829267733492	0.533477594656481	0.788758292344598
Merged-chr1-160212298-2	chr1	160212198	160212398	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009786, intron 1 of 5)	intron (NM_009786, intron 1 of 5)	594.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	4.67126520114688	4.04385399826235	4.35258987179958	4.20604109770582	4.54507055559333	4.8059713524463	4.24018402460313	4.59632254014446	0.52916834028591	0.191126838214944	0.490471832472923
Merged-chr7-128247660-4	chr7	128247575	128247775	+	831.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289553, intron 1 of 9)	intron (NM_001289553, intron 1 of 9)	863.0	NM_001289552	21804.0	Mm.3248	NM_009365	ENSMUSG00000030782	Tgfb1i1	ARA55|Hic5|TSC-5|hic-5	transforming growth factor beta 1 induced transcript 1	protein-coding	3.59772278081137	3.53050055142671	3.6569478479295	3.90029469976711	4.12896424100402	4.03844030203846	3.85241951839052	3.86653840013621	0.80570993109706	0.0873734630637224	0.322436526721936
Merged-chr8-68062476-4	chr8	68062367	68062567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-87893.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	5.72045537407186	5.49950977244328	5.72145774497316	5.97559643008528	5.57620027268891	5.61892235748146	6.21738013403059	5.81453790092278	0.124043105983022	0.670610891137213	0.8642024686037
Merged-chr14-54603480-4	chr14	54603388	54603588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028890, intron 1 of 6)	CpG	2420.0	NM_028890	74359.0	Mm.79815	NM_028890	ENSMUSG00000022179	4931414P19Rik	Rtfc	RIKEN cDNA 4931414P19 gene	protein-coding	7.39575080207916	7.65351141536854	7.31190834879378	7.49071828747671	7.76389573107318	7.92221600201962	7.93386904446692	7.53734019549034	0.426848258919844	0.0214956413043763	0.134284557872933
Merged-chr2-84592950-4	chr2	84592840	84593040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56540.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	6.23486142253835	5.77494491494122	5.93242310939372	6.54803515772769	5.6546838740772	5.77378822742507	6.01099548185425	6.03763013445911	-0.472040998550702	0.102121764936201	0.350811863834884
Merged-chr2-58042099-4	chr2	58041964	58042164	+	907.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10688.0	NM_029972	77767.0	Mm.91712	NM_029972	ENSMUSG00000026830	Ermn	A330104H05Rik|AI854460|ermin|mKIAA1189	ermin, ERM-like protein	protein-coding	4.65782750449475	4.90236245575371	5.30223307085505	5.29607359003993	4.50466985121408	4.61284436093317	4.79309399841827	4.47662687668221	-0.987880309708454	0.00721775454353897	0.0622805856048685
Merged-chr14-70075589-4	chr14	70075531	70075731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1814.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	4.92084255948468	4.80400208395684	4.7163545124822	4.75154295383138	5.25400802771189	5.45606791548607	5.46600655099281	5.38962452991294	1.1210216053299	0.000181753876656651	0.0033559167799076
Merged-chr5-134614542-3	chr5	134614451	134614651	+	723.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020044, intron 1 of 12)	intron (NM_020044, intron 1 of 12)	474.0	NM_022964	56743.0	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	3.57140771790176	3.53821278036178	3.67740856380433	3.76069803615987	3.63420193349831	3.63101998918173	3.8039005985417	3.32972136909277	-0.109076729818089	0.825465051157605	0.933108872014231
Merged-chr5-137103077-3	chr5	137102953	137103153	+	850.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13154.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	3.82071585882704	3.86785564579601	3.52635209181553	4.20188425717012	2.86584466079383	3.33434496829179	2.9855506496357	3.21593074507882	-3.12813879089018	4.75957755221552e-06	0.000141778535286566
Merged-chr2-144009663-4	chr2	144009567	144009767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	1596.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	7.67638590629825	8.07120750429091	8.04586658583344	8.01360241534398	8.32525337372064	8.36176439045261	8.22577414911024	8.14248590787572	0.386864180077338	0.0226512203350916	0.139038566077224
Merged-chr7-144940365-4	chr7	144940242	144940442	+	990.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007631)	promoter-TSS (NM_007631)	-417.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	4.67165911679662	4.82053644477888	4.5898871739372	4.71016361174552	4.85612287367816	4.72202905039601	4.93413430120252	4.82043845321733	0.278504377262996	0.39888962613073	0.696989510466399
Merged-chr2-127363138-3	chr2	127363080	127363280	+	717.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009633)	promoter-TSS (NM_009633)	-106.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	3.20887638512351	3.38632029554718	3.32531037653704	3.16480298103235	3.26400041160505	3.3809271979497	3.19796225889238	3.32350117561849	0.0852605129264437	0.871818636544023	0.95183223179801
Merged-chr5-16552801-4	chr5	16552706	16552906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010427)	promoter-TSS (NM_010427)	-689.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	8.48070379897521	8.61030137026536	8.83583979567743	8.98564852898463	8.76135928449502	8.59042503469751	8.98356701226798	8.88742027188985	0.0817156088350691	0.647805816422568	0.85185825899816
Merged-chr12-82366969-3	chr12	82366895	82367095	+	871.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 7 of 23)	intron (NM_001167983, intron 7 of 23)	55646.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	3.74508084751037	3.98248585161563	3.89985571296316	3.98961722256655	4.01149082618879	3.48413875410629	3.93040714659951	3.89755981377477	-0.166286685655208	0.722231288947198	0.889145957666795
Merged-chr9-40713376-1	chr9	40713276	40713476	+	694.833313	f0_balb.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	27412.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	3.21136171264881	3.23288564741297	3.11061831465264	3.27011312649941	2.44898859544939	2.54343311780685	2.51592355286313	2.52042361946101	-5.354960972529	1.48472528483243e-06	5.01334255451079e-05
Merged-chr8-75213931-3	chr8	75213855	75214055	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029182)	promoter-TSS (NM_029182)	11.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	3.88145881352047	3.87530647895968	3.83522530950312	3.50759042813747	3.50802500409947	3.90777517801598	3.30494989753577	3.78432235396137	-0.407909068827765	0.429263536684111	0.720143399871997
Merged-chr2-28698821-4	chr2	28698730	28698930	+	992.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027283, intron 1 of 4)	MIR3|SINE|MIR	821.0	NM_027283	69987.0	Mm.239376	NM_027283	ENSMUSG00000026809	Spaca9	1700026L06Rik|MAST	sperm acrosome associated 9	protein-coding	5.2258969059654	4.8469039647439	5.01051788111447	4.99771309665362	4.96091297724986	4.92669517228086	5.01921638606805	4.90190587339016	-0.133871126559645	0.670973366246989	0.864428858677581
Merged-chr18-69416298-4	chr18	69416195	69416395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	70135.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	6.47145451684908	6.50114198449752	6.70257737688052	6.59187862783296	6.48419203555781	6.50683034830224	6.0949322806018	6.36277114815323	-0.285923442579049	0.198127394426848	0.499617813340272
Merged-chr12-76306349-4	chr12	76306258	76306458	+	977.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138745, intron 21 of 27)	intron (NM_138745, intron 21 of 27)	-18533.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	4.69070082367529	4.88999580923366	4.85259122727269	5.02835528372388	4.78436663330071	4.82724965806715	5.26892050408007	5.3182895999995	0.360636414477592	0.295914239305015	0.60782268893001
Merged-chr1-45861781-4	chr1	45861695	45861895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63799.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	5.60896668860405	5.05559777220317	5.89942850205287	5.95216354584891	5.22075655498877	4.84321598951927	5.5043574916095	5.50161223573904	-0.670346603489826	0.056879336886711	0.249837353919111
Merged-chr9-123769646-4	chr9	123769542	123769742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009913, intron 1 of 2)	intron (NM_009913, intron 1 of 2)	2431.0	NM_001166625	12769.0	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	6.8430161801164	6.80931704203493	6.70739301614331	6.66672762513791	6.50394370288727	6.57462813482701	6.41866247252327	6.35520872549885	-0.414454647997955	0.0447115849763977	0.21595480131879
Merged-chr10-87718782-4	chr10	87718674	87718874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139491.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	5.82008647488196	5.77538938658168	5.97966064204991	6.04890358376892	5.98229903958246	5.6725582013535	6.21280736231515	5.63716572720885	-0.0226934764380544	0.932767934267884	0.975757811872694
Merged-chr16-55734527-4	chr16	55734419	55734619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87619.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	5.43807070422479	5.64117829488863	5.52436158480832	5.66241133258314	5.4561911687281	5.77781161603377	5.32123968432058	5.60037870261698	-0.0606950320390047	0.826121388023079	0.933285205415166
Merged-chr11-31812389-4	chr11	31812298	31812498	+	989.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102312, intron 1 of 4)	intron (NR_102312, intron 1 of 4)	12149.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	5.33001158881364	5.18573340731043	5.04605175732769	5.67513782316877	5.03560145008736	4.95176183423724	5.1864505191172	5.14476003702431	-0.503223357884727	0.121464094525756	0.385992168757419
Merged-chr11-23657935-4	chr11	23657831	23658031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023651, intron 1 of 3)	intron (NM_023651, intron 1 of 3)	-7743.0	NM_028956	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	6.85821192522344	6.70575995146228	7.03507390996262	7.07886532454438	6.77567321249605	6.53134070378061	6.96409017795809	6.68158753702763	-0.258308019816383	0.227715367034911	0.536465946363434
Merged-chr19-37435482-4	chr19	37435386	37435586	+	957.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008245, intron 1 of 3)	CpG	645.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	4.2083691386718	3.75566332247169	4.67649889506643	4.44174093502533	4.27251884198236	3.95391206784059	4.36440391296913	4.49926936429688	-0.0637957850042817	0.891013972359635	0.959254414522706
Merged-chr15-11996059-4	chr15	11995970	11996170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011294)	promoter-TSS (NM_011294)	-63.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	7.67099519518512	7.89141542883962	7.6722885007815	7.85007472215785	7.97416827822124	7.97252613187182	8.07173960026834	7.81295859345569	0.234030780422606	0.162068701817325	0.451144248358323
Merged-chr2-83812692-4	chr2	83812592	83812792	+	948.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175514)	promoter-TSS (NM_175514)	-36.0	NM_175514	241520.0	Mm.330351	NM_175514	ENSMUSG00000048388	Fam171b	D430039N05Rik	family with sequence similarity 171, member B	protein-coding	5.1483024074486	4.8842206322628	5.50237101170215	5.19966190523032	4.6855224405883	5.32209716838419	4.92160869398583	4.86629977902835	-0.459603888115374	0.185238166156396	0.483083489690593
Merged-chr6-83586630-2	chr6	83586530	83586730	+	829.099976	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_078345, exon 8 of 8)	non-coding (NR_078345, exon 8 of 8)	-14126.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	3.57732006234909	3.47908936065989	3.47523752486983	3.15292241940565	3.52217053786864	3.47798658844761	3.35111638124863	3.24021367351701	-0.0463206223171137	0.931015455342689	0.97520485035137
Merged-chr1-161520210-5	chr1	161520161	161520361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25604.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	6.10888994262078	6.02802640111316	6.39429952384149	6.34833351967848	5.84546842410135	5.8933443795761	5.86266098047217	5.62653559665507	-0.66572544149451	0.00739078814754035	0.0633436375140006
Merged-chr5-103654345-2	chr5	103654245	103654445	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028824, intron 2 of 3)	B3|SINE|B2	1379.0	NM_028824	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	2.63952931708678	2.91982304696073	2.78363744456319	2.85675864076131	2.75003009394005	3.14305028599829	3.0196820418424	3.08534654562836	0.841916932105422	0.180005808197614	0.476341490880287
Merged-chr11-103178320-4	chr11	103178204	103178404	+	980.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019679, intron 1 of 26)	intron (NM_019679, intron 1 of 26)	7166.0	NM_019679	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	5.32943421492225	5.56689998238329	5.5187616633608	5.3755743235388	4.83067264467696	5.14142040639088	5.15074724303065	5.10533764208382	-0.733871508516808	0.0145248621606347	0.102525303821084
Merged-chr16-91561241-4	chr16	91561134	91561334	+	841.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008338, intron 5 of 6)	intron (NM_008338, intron 5 of 6)	14140.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	3.72402210442963	3.92946633824971	3.6086886296832	3.6102918280148	4.01849533452747	3.59932908713213	4.00256211601831	4.22073399393763	0.739413645749425	0.114523870338784	0.37434306423789
Merged-chr10-75593422-3	chr10	75593275	75593475	+	722.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359425, intron 1 of 7)	intron (NM_001359425, intron 1 of 7)	3994.0	NR_153110	23887.0	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	3.45626039796415	3.7087523891028	3.51160753490276	3.1416567062158	3.4147966514195	3.5149525830106	3.64718210023786	3.27528671340344	0.0213467649388553	0.968525622348044	0.988694268692349
Merged-chr11-117990172-4	chr11	117990074	117990274	+	969.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 1 of 9)	intron (NR_151726, intron 1 of 9)	3317.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	5.44941031717455	5.44172772882613	5.24894049117069	4.9693710543917	5.27256383149216	5.51242842698332	4.90906872987432	5.3641831567654	0.00499028950481618	0.987691033747934	0.995315979319888
Merged-chr1-95314909-4	chr1	95314817	95315017	+	994.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026321, intron 1 of 2)	intron (NM_026321, intron 1 of 2)	1289.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	4.9364222854607	5.21149756460067	5.36070337581889	5.55923768361209	5.12036201943677	5.07640554099612	5.27767294657792	5.04474570493034	-0.319512874097446	0.316766281509903	0.628743667727529
Merged-chr3-116836170-4	chr3	116836043	116836243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23424.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	5.13151514987309	4.80983297638004	5.24902504782918	5.078215659957	4.6459305263038	4.83557834605248	4.87459487628525	5.15899935653633	-0.374252786507908	0.266513351949705	0.578164752957072
Merged-chr2-128203303-4	chr2	128203194	128203394	+	798.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75719.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	3.82255528764084	4.32340778257013	3.82310459770544	3.84484251802891	3.76669360885509	3.6570178709018	3.46344337702802	3.91891741892264	-0.745748928656445	0.130434036591342	0.402033702443818
Merged-chr8-85482024-4	chr8	85481921	85482121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10596.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	5.94828039853924	6.25518348292386	5.80466948094485	6.10088747605877	6.26315826293375	5.82086284700489	6.08829186718009	6.03302924093534	0.0392745694878563	0.876873181996867	0.953815057399122
Merged-chr2-70877537-4	chr2	70877410	70877610	+	992.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52030.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	4.68546361731601	4.37015049524853	4.93605241005895	4.86888670160904	4.25227567806166	4.93562341147573	4.81150333968929	4.8998817305755	0.014367604556407	0.970877629265969	0.989540146809868
Merged-chr1-92061874-4	chr1	92061776	92061976	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 2 of 26)	intron (NM_207225, intron 2 of 26)	118465.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	4.89852162490371	5.17787652065132	5.48402869374917	5.4703059924273	5.33558116063331	4.81467397384596	5.55555612324823	5.55582322276484	0.111980557142218	0.743566290348249	0.898960594151983
Merged-chr6-71487056-3	chr6	71486957	71487157	+	645.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6820.0	NM_009543	22644.0	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	3.165291983385	2.89651495748769	3.10655350019171	3.22321287054369	3.25508954685574	3.15337206159317	3.09565539469636	3.27450254567035	0.340686876392034	0.546365860321314	0.796350145922542
Merged-chr11-83534860-4	chr11	83534765	83534965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4347.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	7.38096589983355	7.71762449047743	6.8776413348762	6.54847962853411	7.71027959267629	7.91075002941371	7.3552442664147	7.18505867846122	0.488399693230344	0.0902088566165116	0.327918707170557
Merged-chr14-105262544-4	chr14	105262438	105262638	+	688.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029561, intron 1 of 7)	B3A|SINE|B2	3865.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	3.52425998863716	3.63315396935311	3.46601231740735	3.62719750313117	3.66903033152232	3.58074259602298	3.72033207177895	3.82769459654122	0.407992375752961	0.38678121632364	0.68780323773204
Merged-chr15-100041768-4	chr15	100041638	100041838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	3074.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	5.10868051134945	5.05852244843854	5.51599420215172	5.34711696136885	5.07793443241912	5.25029499740582	5.35927754432419	5.2968404241443	-0.0562194276119858	0.853394354740448	0.944788460884744
Merged-chr17-88557257-4	chr17	88557158	88557358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 9 of 21)	intron (NM_028658, intron 9 of 21)	27134.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	5.61248371696578	5.42181248805675	5.41834357760087	5.50404122964272	5.55602456143334	5.78720940423611	5.53274685566652	5.75554093013676	0.281240078874579	0.290367495852185	0.602514881708967
Merged-chr4-126489934-4	chr4	126489807	126490007	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153177, exon 18 of 18)	3' UTR (NM_153177, exon 18 of 18)	-21324.0	NM_153403	236511.0	Mm.30800	NM_153403	ENSMUSG00000041530	Ago1	Eif2c1	argonaute RISC catalytic subunit 1	protein-coding	4.97094470855972	5.38173734000003	5.04379614042068	5.25246841209872	5.4087102923085	5.31864739841738	5.01980969940417	5.10889849529745	0.0902087167964438	0.772864762315134	0.911052408089747
Merged-chr11-22843046-4	chr11	22842957	22843157	+	915.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	16678.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	4.67633846200741	4.5151289540917	5.10000434005269	5.31219695244615	5.14071673799832	4.47918453965661	4.52526365997375	5.06617034766816	-0.210714966515112	0.610741905192377	0.831904433360537
Merged-chr15-99295106-4	chr15	99295041	99295241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018786)	promoter-TSS (NM_018786)	-100.0	NM_018786	54614.0	Mm.358668	NM_018786	ENSMUSG00000023007	Prpf40b	2610317D23Rik|Hypc	pre-mRNA processing factor 40B	protein-coding	6.90301059218458	7.01141820942379	7.21226568910022	6.67792949992386	7.10636138855111	7.14624134829625	6.95955229407409	6.81607868058596	0.0875225063841168	0.683418153656701	0.870321523309355
Merged-chr7-126780776-4	chr7	126780616	126780816	+	745.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011538)	promoter-TSS (NM_011538)	-767.0	NM_011538	21389.0	Mm.727	NM_011538	ENSMUSG00000030699	Tbx6	rv	T-box 6	protein-coding	3.83952289338135	3.7275240360465	3.63579200382183	3.49096024806549	3.66556433415228	3.75376695077337	3.72649148238559	3.83776097550166	0.235199959451686	0.613969107368989	0.833604331777153
Merged-chr4-59565990-4	chr4	59565898	59566098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-15565.0	NM_001301367	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	6.46331017311743	5.83324666944493	6.36662827508453	6.59111315176109	6.30385185424128	5.97678830539348	5.68639172242483	6.0564566165185	-0.48402460233897	0.0874810417942704	0.322515827102832
Merged-chr6-8510408-4	chr6	8510374	8510574	+	805.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133236, intron 1 of 7)	intron (NM_133236, intron 1 of 7)	874.0	NM_133236	170772.0	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	3.52946562505705	3.59664063642575	4.12475053525439	3.57934854490113	3.67581866810966	3.64719101694962	3.33199070921733	3.63947912808072	-0.438824854681238	0.399109366015652	0.697185205380226
Merged-chr7-89236823-4	chr7	89236731	89236931	+	780.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 5 of 14)	intron (NM_001360746, intron 5 of 14)	101956.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	4.22736864898186	4.34336076828724	4.61496061018977	4.98872784262963	4.23268665933511	4.40554912677535	4.555746657064	4.3219030574926	-0.49599484686599	0.236507581756751	0.546570557203369
Merged-chr10-69308095-3	chr10	69307998	69308198	+	646.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER30|DNA|hAT-Charlie	44814.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	3.06766841936547	3.11742269091364	3.12765132351735	3.07516321390072	2.96910672868047	2.90501297986622	3.17210155855478	3.33953404775803	0.0385627306257679	0.946675075053853	0.98095209334417
Merged-chr8-70718538-5	chr8	70718477	70718677	+	997.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195253)	promoter-TSS (NM_001195253)	34.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	4.83462072267528	4.52288863023239	4.72666899534985	4.51900572909233	4.98883584997883	4.69776140542723	4.62725710128314	4.86629898339214	0.355944038062096	0.306818930764521	0.61919661675327
Merged-chr15-78258439-4	chr15	78258345	78258545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 7 of 9)	intron (NM_008677, intron 7 of 9)	13634.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	7.65490074250372	8.06945292725579	7.96837156706323	7.81817896243163	7.89414203566912	7.70603760389472	7.86814553576846	7.67656748556412	-0.121244945487528	0.495147819327343	0.765544537729018
Merged-chr12-80885519-4	chr12	80885403	80885603	+	906.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38944.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	4.18510897389527	4.7015656864774	4.68551996553231	3.84815843231359	4.65138466699269	4.5053587175957	4.16791507046818	4.41510515794305	0.121127994172382	0.789051863071751	0.91835324030065
Merged-chr16-3895678-4	chr16	3895590	3895790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153801, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	11071.0	NM_001290689	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	7.23401260341212	7.05701130785615	6.9613793025472	7.19068938974116	6.60502430715422	6.85394913246127	6.92616088533821	6.77865128557351	-0.461194535469048	0.020733711653016	0.131194316094766
Merged-chr2-165318622-4	chr2	165318532	165318732	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	2194.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	5.25877200142629	4.96113823507911	5.37819896311847	5.38639569699882	5.2074398612956	5.40268122811212	5.40623125915705	5.34586751369544	0.131158966516436	0.659157222291562	0.858145103575869
Merged-chr4-150473775-4	chr4	150473576	150473776	+	952.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 6 of 22)	intron (NM_001085492, intron 6 of 22)	178498.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	4.54515255821222	4.50421982850552	4.50804901457661	4.9001364166609	4.37719065693164	4.06219554691763	3.86260220338042	3.99335882221468	-1.28610913518936	0.002995729499113	0.0319545976348516
Merged-chr4-53082088-4	chr4	53081994	53082194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013454, exon 16 of 50)	exon (NM_013454, exon 16 of 50)	70214.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	6.97001873154374	6.79434566718395	7.10417286770845	7.1800675840148	6.82354382683756	6.78210344467858	7.33474289987968	6.88742037690427	-0.0704950606547563	0.750293663061297	0.901687591055583
Merged-chr17-21707701-4	chr17	21707624	21707824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008501)	promoter-TSS (NM_001008501)	-17.0	NM_001008501	240034.0	Mm.34723	NM_001008501	ENSMUSG00000067928	Zfp760	9430018I06|BC029103	zinc finger protein 760	protein-coding	6.88367466523477	6.90303223045485	6.92281516023201	7.09334689219526	6.62420101032711	5.97784932303665	6.64167275948524	6.52659401026359	-0.685763979163055	0.00302041604390385	0.0321552787300377
Merged-chr16-32159177-4	chr16	32159067	32159267	+	888.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347181, intron 1 of 2)	intron (NM_001347181, intron 1 of 2)	6427.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	4.50311980751619	4.53730875634809	4.28991518227141	4.13720990983908	4.42969765732149	4.46427011184552	4.40238592947723	4.46095684222921	0.177920799502094	0.640781956453128	0.848357027665442
Merged-chr7-109959757-4	chr7	109959655	109959855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021494, intron 1 of 22)	intron (NM_021494, intron 1 of 22)	667.0	NM_021494	19347.0	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	6.38458750720057	6.52285719134884	6.69520704924818	6.5543570573772	6.3476299146943	6.61613947563266	6.85905641952122	6.60066463365725	0.0966129838917843	0.666267331720793	0.861914264044268
Merged-chr5-9107502-4	chr5	9107392	9107592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	6755.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	5.9880959590272	6.09455453615659	6.07411044759033	6.26442928720937	5.83958665146279	6.07395887985296	5.86842577905373	6.00665022806079	-0.281358839578033	0.242471393218348	0.5532044136768
Merged-chr12-3235386-4	chr12	3235299	3235499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015551)	promoter-TSS (NR_015551)	-392.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	7.72797972610132	7.85405760278605	7.46545583522182	7.48709140508725	7.79106670566644	7.76399514582424	7.71510290961082	7.46030485075877	0.0674480518339658	0.719605994284109	0.888022825078143
Merged-chr17-31296189-3	chr17	31295982	31296182	+	918.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242427)	promoter-TSS (NM_001242427)	-142.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	4.00183729963735	3.88427202697982	4.17625594571131	3.77152559684959	3.92013136709742	3.91994952497475	3.78553094835108	4.1326693144184	-0.0262894688103496	0.952853552500861	0.983276598943455
Merged-chr4-33246903-4	chr4	33246801	33247001	+	897.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033225, intron 1 of 1)	intron (NM_001033225, intron 1 of 1)	1886.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	3.63641777431396	3.75478302801941	4.24758422611805	3.86402720637746	3.97408855831277	3.75519082280276	3.84160363621236	3.95289667789424	-0.0147888171382245	0.974623383240619	0.990953886748051
Merged-chr17-35439062-4	chr17	35438958	35439158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201460)	promoter-TSS (NM_001201460)	-97.0	NM_010394	15018.0	Mm.431282	NM_010394	ENSMUSG00000060550	H2-Q7	H-2Q7|Ped|Q9|Qa-2|Qa-7|Qa7	histocompatibility 2, Q region locus 7	protein-coding	8.58078187421848	8.88615919446213	8.52796470051778	8.06355745679105	9.31200047432307	9.31882816802959	8.98374140170697	8.86753727637509	0.739098287638072	0.000427052777152538	0.00678324910881273
Merged-chr3-146521201-8	chr3	146521127	146521327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027332, exon 1 of 5)	exon (NM_027332, exon 1 of 5)	196.0	NM_027332	70285.0	Mm.28128	NM_027332	ENSMUSG00000028187	Rpf1	2210420E24Rik|2310066N05Rik|Bxdc5	ribosome production factor 1 homolog	protein-coding	5.77483395341731	5.87652077884678	6.57527086614721	6.04525927278503	5.95332680173457	6.36557463278809	6.35616369892352	6.44961016860761	0.283203960750578	0.31300086012614	0.624907449383203
Merged-chr6-54939938-4	chr6	54939828	54940028	+	888.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 4 of 11)	intron (NM_001171007, intron 4 of 11)	31733.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	3.70133023010317	3.35323884876195	3.95435504047028	4.25018414347969	3.50710386299543	3.82194846624664	3.74114659852934	4.12275866966073	-0.142508065349717	0.795718076807063	0.920897975671128
Merged-chr19-12564406-4	chr19	12564324	12564524	+	836.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-9086.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	4.16679401241658	4.34105566752506	4.3045862873893	4.27030014236433	4.64694490397722	4.29304720748401	4.14972116204463	4.06485228218461	0.123876190528859	0.762824422173246	0.907011913026374
Merged-chr17-55761228-4	chr17	55761122	55761322	+	990.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139138, intron 2 of 16)	MERV1_LTR|LTR|ERV1	11238.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	6.46175329173596	7.02583942079189	6.61244922575264	5.20115681652862	6.10582715468455	6.41466864249648	5.78328803405383	5.54691124578949	-0.730245311168959	0.216025027721136	0.52240905990201
Merged-chr5-129887420-4	chr5	129887313	129887513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024166)	promoter-TSS (NM_024166)	57.0	NM_024166	14004.0	Mm.30133	NM_024166	ENSMUSG00000070493	Chchd2	AL033347|Etohi6	coiled-coil-helix-coiled-coil-helix domain containing 2	protein-coding	7.97464446737298	8.1479154744952	8.18019334954696	8.04277649230578	8.41459068135149	8.50138256600659	8.36820829889592	8.16869854917101	0.359140472876875	0.0256559967395928	0.151072815348071
Merged-chr5-137079990-4	chr5	137079891	137080091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7719.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	7.35805299992307	7.39833849686962	7.4570262541629	7.44849872695031	7.31394152427236	7.44159663824692	7.6108812863799	7.18013843804301	-0.0317877053025682	0.862620147127418	0.948225401948674
Merged-chr5-45919818-4	chr5	45919712	45919912	+	879.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	12597.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	3.94648662682068	3.80145544223812	4.30282949809664	4.03368960293464	4.34091711842581	4.13151366446311	4.87126949228266	4.77689380417244	1.26286673829278	0.00389730667896766	0.0392704405580746
Merged-chr12-73914830-1	chr12	73914730	73914930	+	572.5	f0_balb.idr	intron (NM_010431, intron 1 of 14)	intron (NM_010431, intron 1 of 14)	6963.0	NM_001313919	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	3.52259220009527	3.37913665544736	3.3175051395214	3.15044104306545	3.16021175503653	3.24948355293789	3.12782791982883	3.25875045326757	-0.532637773912242	0.332462755816047	0.64346986397225
Merged-chr19-34878061-4	chr19	34877966	34878166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023792)	promoter-TSS (NM_023792)	-149.0	NM_023792	75735.0	Mm.24742	NM_023792	ENSMUSG00000033610	Pank1	Pank|Pank1b	pantothenate kinase 1	protein-coding	7.22943834311446	7.48320035247201	7.31450337740214	7.4418280487831	7.07785585804939	7.25857425570162	7.2264491358332	6.53648146207951	-0.434843968216581	0.0467970455014458	0.222409389851499
Merged-chr1-87853980-5	chr1	87853890	87854090	+	737.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_136921, exon 1 of 2)	non-coding (NR_136921, exon 1 of 2)	309.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	3.24147864435659	3.08059170135583	3.352622048259	3.1490935635365	3.29827468058526	3.16487193374585	3.22986937197145	3.45160791798216	0.329189673062789	0.541032372491477	0.793009827469438
Merged-chr9-88710006-4	chr9	88709910	88710110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359992, intron 2 of 2)	intron (NM_001359992, intron 2 of 2)	9577.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	6.87282158940428	6.73669294797004	7.21525218200402	6.87054794579582	6.46245926740217	6.46342870159344	6.5303136779837	6.81571177659311	-0.509009446411774	0.0213952526071364	0.133892446397342
Merged-chr4-53080379-4	chr4	53080257	53080457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 17 of 49)	MIRb|SINE|MIR	68477.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	6.35981915784462	6.12601349448758	6.50017312102391	6.9433691311635	6.58732877123085	5.88664278345345	7.03592707400146	6.13610680216121	-0.0521634153566054	0.871004395913129	0.951515750732959
Merged-chr7-13046305-4	chr7	13046198	13046398	+	941.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290453, intron 5 of 6)	intron (NM_001290453, intron 5 of 6)	-8023.0	NM_001168469	22192.0	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	5.00134867228671	5.10278252173629	4.74081043589145	5.00247970537809	4.91923187473515	4.64954281209872	5.24780997243442	5.09612684801146	0.0473452370116755	0.887666622335301	0.957837975902937
Merged-chr3-14913502-4	chr3	14913399	14913599	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27211.0	NM_009801	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	5.35375051351043	4.85497697490957	4.97793970377648	5.17102626193034	5.24006979485461	5.18907995691758	4.95418129618448	5.29550736884854	0.137032968255956	0.66447381882502	0.861009602629657
Merged-chr15-84183823-2	chr15	84183723	84183923	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054088, intron 7 of 7)	RSINE1|SINE|B4	-8410.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	3.94679095606862	3.84465839214682	3.7164479152602	3.9890493411398	4.17230782997884	4.40197817058017	4.33306841329901	4.35091734796865	1.08445879008796	0.00949405339663037	0.0760239877060134
Merged-chr10-88327643-4	chr10	88327547	88327747	+	825.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 5 of 6)	intron (NM_027878, intron 5 of 6)	29428.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	3.65123597157562	4.07094827034638	3.81937052653919	3.95214822876961	3.88901699128687	3.88492042122587	3.99607374968165	3.91793626220073	0.0862454513433146	0.845647725970427	0.941557049643182
Merged-chr9-75414484-3	chr9	75414393	75414593	+	959.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040719, intron 3 of 3)	intron (NR_040719, intron 3 of 3)	4309.0	NR_040719	71274.0	Mm.399152	NR_040719	ENSMUSG00000097021	4933433G15Rik	4921522K19Rik	RIKEN cDNA 4933433G15 gene	ncRNA	3.3438425531558	3.48084560893061	3.18303570136699	2.53729889668844	4.79383697033304	4.37073479973558	4.32852329378379	4.3484189327853	4.02231944149453	0.000219229087409727	0.00392270166232703
Merged-chr9-50761711-4	chr9	50761618	50761818	+	918.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001311073, exon 4 of 4)	3' UTR (NM_001311073, exon 4 of 4)	4215.0	NM_001311073	68721.0	Mm.171374	NM_023483	ENSMUSG00000037971	1110032A03Rik	4930500N06Rik|c11orf1	RIKEN cDNA 1110032A03 gene	protein-coding	4.19615921686342	3.89809297559428	4.15082436626106	4.15594767293409	4.4019574382323	4.07185970850913	4.03678287363254	4.51136089656569	0.42673925239688	0.306875906407986	0.619243826908005
Merged-chr10-98954755-4	chr10	98954532	98954732	+	976.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	39480.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	4.49699465755999	4.2718033261746	4.32549769065052	4.58429663479603	4.64692913608107	4.40554656215816	4.30691013608254	4.64578524808335	0.181309613200708	0.633019062859802	0.844361521565465
Merged-chr17-86961729-3	chr17	86961599	86961799	+	897.0499880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1412.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	4.92207500609806	4.54541654102185	4.89226827195756	5.0307511211643	3.96809975776795	4.34004012044634	4.13921365629426	4.3567440644581	-1.54719287212774	9.46715102658286e-05	0.0019397304056452
Merged-chr9-56079797-4	chr9	56079696	56079896	+	877.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10180.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	3.93315017113694	3.87043675209306	4.20623299267854	4.07770895064258	3.83914583698343	3.70694728264398	4.18676313313305	4.11915945371221	-0.145162369244019	0.745153005217719	0.899431814827356
Merged-chr2-51933766-3	chr2	51933615	51933815	+	727.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355607)	promoter-TSS (NM_001355607)	-380.0	NM_001355607	71684.0	Mm.28309	NM_030243	ENSMUSG00000036249	Rbm43	0610033I05Rik	RNA binding motif protein 43	protein-coding	2.90675740734986	2.69484396905583	3.11571542423331	2.72644855643607	2.59366561180928	2.61793291336498	2.7782494279528	2.51224567496684	-1.18105726319716	0.0876333120187599	0.322830306019527
Merged-chr18-6145088-4	chr18	6144969	6145169	+	984.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8971.0	NM_001039692	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	4.75114128954756	4.83094735666083	4.67150048319699	4.82408727310903	4.94134898652853	5.10416295035291	4.80467441130632	4.78714993122637	0.279477531699021	0.392334766587708	0.691871177834811
Merged-chr17-17893467-4	chr17	17893433	17893633	+	863.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008039, exon 2 of 2)	exon (NM_008039, exon 2 of 2)	5709.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	4.126196143561	3.74832276305437	3.99674332908825	3.5694438892135	3.89723286192356	3.80833909569021	3.73046186935309	4.08233989285948	0.0659028537146488	0.889362371755232	0.958519732455951
Merged-chr3-154885706-2	chr3	154885604	154885804	+	941.708374	f0_c57.idr|f1_c57bl6.idr	intron (NM_177066, intron 17 of 24)	intron (NM_177066, intron 17 of 24)	169703.0	NM_177066	435766.0	Mm.210428	NM_177066	ENSMUSG00000040086	Tnni3k	Cark|D830019J24Rik	TNNI3 interacting kinase	protein-coding	3.11726180873262	3.02319034267245	3.35907661595794	2.5231514776066	4.35080102693765	3.99725515197564	4.83063569467079	4.54921744636527	5.73395615460795	2.87843407288191e-15	4.87819187794433e-13
Merged-chr5-139791465-4	chr5	139791381	139791581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010757)	promoter-TSS (NM_010757)	-55.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	8.1497154569787	8.28331989626218	8.13222227862565	7.96475269697706	8.39179023250687	8.48657799802734	8.16119366736087	8.28679505263477	0.261690651230782	0.116148655543594	0.377075323577067
Merged-chr17-65681122-3	chr17	65681019	65681219	+	861.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 5 of 6)	(GGA)n|Simple_repeat|Simple_repeat	-38915.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	3.70810592689595	3.46990890045325	3.29407994081785	3.26712656132819	3.24536972880673	3.27803211617399	3.34126688339587	3.5664631079184	-0.271285804097238	0.6146515811586	0.834034302764837
Merged-chr16-19969639-4	chr16	19969554	19969754	+	947.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183390, intron 1 of 6)	intron (NM_183390, intron 1 of 6)	13395.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	4.70617218694086	4.35410038459652	4.40767293185359	4.68201970117817	4.69431071406261	4.80243154966117	4.75810480949431	5.09378120441046	0.602258024074208	0.0937896866162015	0.335032425155807
Merged-chr4-33018551-4	chr4	33018439	33018639	+	736.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027491, intron 6 of 6)	intron (NM_027491, intron 6 of 6)	12784.0	NR_036602	100504166.0	Mm.426309	NR_036602	ENSMUSG00000085037	4933421O10Rik	-	RIKEN cDNA 4933421O10 gene	ncRNA	3.46726974177826	3.45541429975933	3.27382860956979	3.91715545879988	3.74712119048643	3.80677730115428	3.76996186029543	3.63486943011911	0.512571207347097	0.338644743022624	0.648109446558985
Merged-chr3-84772065-4	chr3	84771962	84772162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43515.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	7.25140432046345	7.36780968195135	7.46721774957	6.9650316515689	7.12636681225262	7.20948092913122	7.24780634990774	6.9486979726328	-0.172862011100953	0.400743318203475	0.698466011432587
Merged-chr2-60855211-4	chr2	60855144	60855344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	26194.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	7.75961568914744	7.86314626815301	7.61869070102789	7.71717110363193	7.7523331564109	7.82247485868144	8.077736846219	7.69075030802665	0.130071820877918	0.459744022545945	0.742211834447672
Merged-chr9-108843141-4	chr9	108843044	108843244	+	893.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001359573, exon 25 of 36)	exon (NM_001359573, exon 25 of 36)	-10899.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	4.40229866396498	4.66074442380953	4.35382180480758	4.52900801845088	4.91269331647461	4.48528034459528	5.22625760973899	4.87869621265076	0.854720050952757	0.0206272576728914	0.130741547096949
Merged-chr4-120053796-1	chr4	120053696	120053896	+	830.666687	f0_c57.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-107410.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	4.8191250982332	4.5405541377016	4.31401724078495	4.85576578480255	4.85416068388315	4.49479091140173	4.89615931984846	4.78140780794446	0.223009125399082	0.54746001340731	0.796851995712218
Merged-chr3-55113177-7	chr3	55113066	55113266	+	928.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001144987, intron 1 of 8)	intron (NM_001144987, intron 1 of 8)	1000.0	NM_001144987	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	3.72425153104319	3.67682946893892	3.87522433358306	3.6594273821551	3.66867248786298	3.84434338662124	3.54182158493952	4.08919411553596	0.20005888148874	0.672416846971192	0.865183636127304
Merged-chr8-53505682-4	chr8	53505562	53505762	+	854.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6040.0	NM_001205054	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	4.35677553100319	4.55663965704959	4.67078000472669	4.62984157954593	4.22407643331663	4.34276689382823	4.4641424204431	4.26295248631312	-0.56994629000992	0.129069976526793	0.39973336201543
Merged-chr19-40671418-3	chr19	40671294	40671494	+	844.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	11624.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	3.80803501169657	3.30367779346469	3.48124257496685	3.4003344484431	3.44581852715918	3.07491843129665	3.51881079838164	3.30841663084902	-0.533093799520823	0.339689504619332	0.648832933028295
Merged-chr15-13212142-3	chr15	13212036	13212236	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38461.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	3.84395528414266	3.69872142770285	4.03222540484241	4.16143324241137	3.7021053644199	3.61559334514814	3.87764392679625	3.9394588474175	-0.482536827206588	0.303531898710557	0.616161790392389
Merged-chr2-126466857-3	chr2	126466691	126466891	+	903.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	24762.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	3.1802617796344	3.31609996981724	3.47360060047618	2.91895036942156	2.70444866322917	2.67112801566625	2.79283712962263	3.0640988300738	-1.8711213167374	0.00697502543943867	0.0607060272072637
Merged-chr2-30246725-4	chr2	30246633	30246833	+	811.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177725, intron 2 of 3)	intron (NM_177725, intron 2 of 3)	8964.0	NM_177725	241296.0	Mm.389232	NM_177725	ENSMUSG00000007476	Lrrc8a	Lrrc8|mKIAA1437	leucine rich repeat containing 8A	protein-coding	3.9234296829812	3.53953224152712	4.0143205740083	4.07458436335994	3.96790555303424	3.66229850948949	3.70710861924725	3.77309215934749	-0.343172364970592	0.474808044985615	0.75189110620589
Merged-chr1-165710126-3	chr1	165710000	165710200	+	756.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2006.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	3.28620050403343	2.92153178169854	3.07718677395525	3.16506324384893	2.95876458056952	2.78121501489526	2.88343790848823	3.1852297514747	-0.669002999670899	0.277997695520907	0.590110878250109
Merged-chr13-51846170-1	chr13	51846070	51846270	+	1000.0	f0_c57.idr	promoter-TSS (NM_011817)	promoter-TSS (NM_011817)	-505.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	4.41678512674542	4.70485421757035	4.63916421699698	4.19332145507434	5.12463143870151	4.89209394691749	4.93719194447841	4.75287729896531	0.95927966001304	0.00777165503462014	0.065793593647188
Merged-chr1-91414230-5	chr1	91414166	91414366	+	833.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360900)	promoter-TSS (NM_001360900)	-228.0	NM_001360900	55927.0	Mm.280029	NM_019479	ENSMUSG00000067071	Hes6	AI326893|bHLHb41	hairy and enhancer of split 6	protein-coding	3.25485287032103	3.09279516429268	3.25527034205248	3.45698369374308	3.122690275088	3.10919071100146	3.35247802197737	3.46587602875087	-0.0436992539984667	0.937983689678818	0.977460307804652
Merged-chr5-64701946-4	chr5	64701871	64702071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A_|LTR|ERVL	-91272.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	5.04530890104335	4.98398402191217	5.58791002862271	5.45442577556864	5.31851936964854	5.4288846248419	5.2587197051608	5.70051818989768	0.237155923302952	0.457567644171828	0.740680600029713
Merged-chr16-10521343-4	chr16	10521212	10521412	+	923.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007575, intron 15 of 18)	intron (NM_007575, intron 15 of 18)	21742.0	NM_021428	58239.0	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	4.51131648846555	4.90687450756246	4.25765056706211	4.30524680568213	4.19829286910613	4.23544934832612	4.28456250947792	4.10652229988144	-0.743076418001169	0.0737661601092562	0.292512618964721
Merged-chr1-36307247-4	chr1	36307156	36307356	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033310)	promoter-TSS (NR_033310)	-477.0	NM_001172206	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	4.46198258490158	4.77472087542252	4.50963842422876	4.86833431483928	5.23588817868859	5.04205041402723	4.48967800135362	4.90142929511026	0.555969725322365	0.140603243242928	0.417020460987187
Merged-chr1-191403310-4	chr1	191403230	191403430	+	872.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6289.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	4.59390382383463	4.89125234747468	4.923227327069	5.03622416573778	4.71903576943191	4.44705701882807	4.39726086815164	4.59169751547821	-0.697936212862971	0.0532013171373982	0.240539703520477
Merged-chr7-24407098-4	chr7	24406939	24407139	+	728.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028047, intron 5 of 13)	intron (NM_028047, intron 5 of 13)	7411.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	3.01334343155471	3.15372007333928	3.28446182008214	2.84808429278309	3.05131964420004	2.8509683636319	3.06162489346058	2.95016725614665	-0.392214073192372	0.519630955419038	0.780230181959112
Merged-chr1-34465669-4	chr1	34465578	34465778	+	826.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 5 of 14)	intron (NM_011206, intron 5 of 14)	5932.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	3.05396391275024	3.14573563024038	3.42795557957031	3.0378926884574	3.47941168089917	3.3686137865343	3.56511882004926	3.67152354669196	1.27933491989756	0.0163577845189501	0.11159006558121
Merged-chr18-25548585-4	chr18	25548465	25548665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	131183.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	5.63602049179336	5.62350037072466	5.85733188455513	5.90783141599085	5.7312586626685	5.78555775474159	5.6859189508689	5.78400080456025	-0.0460950494809091	0.857332360934734	0.946273938640331
Merged-chr19-11807449-3	chr19	11807347	11807547	+	966.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	11956.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	4.49669651377532	4.229170576594	4.60482819149669	4.34068349487424	3.83812537019687	3.94910384064725	4.35963716228573	4.29241125955764	-0.737593607917998	0.0840679508178881	0.3153389898433
Merged-chr14-122191182-3	chr14	122191080	122191280	+	953.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	9486.0	NM_029556	69634.0	Mm.34608	NM_029556	ENSMUSG00000025545	Clybl	0610033J05Rik|2310014M14Rik|AI256068|Clb	citrate lyase beta like	protein-coding	4.12223655357057	4.13375198236441	4.16596051237398	4.08688524504904	3.58684355047387	4.00443947589276	3.86677866084528	3.98172323115281	-0.738367691689239	0.0944144765478272	0.336150861654551
Merged-chr1-36253030-4	chr1	36252935	36253135	+	913.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8733.0	NM_198899	320011.0	Mm.261022	NM_198899	ENSMUSG00000037470	Uggt1	0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik|GT|UGT1|Ugcgl1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding	4.2198934797316	4.36037146194086	4.11906645406318	3.98867193016694	4.45278698397518	4.76819240413533	4.6467425182342	4.39977539707373	0.948479593746459	0.0139812463109237	0.0999136037562441
Merged-chr16-24913157-3	chr16	24913065	24913265	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-146474.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	3.72039496256381	3.25180050815542	3.5311920049201	3.32265623587274	3.41495414143183	3.35831773447088	3.41103484609687	3.30630519228026	-0.294669281190912	0.577578430651204	0.814168830880721
Merged-chr15-88732570-4	chr15	88732480	88732680	+	928.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033274, intron 1 of 12)	intron (NM_001033274, intron 1 of 12)	1639.0	NM_001033274	223770.0	Mm.254438	NM_001033274	ENSMUSG00000022387	Brd1	1110059H06Rik|AI316859|mKIAA4191	bromodomain containing 1	protein-coding	4.45500579741029	4.34669271255267	4.31906414288771	4.48596153573729	4.68630886562882	4.67073806559008	4.63330576836288	4.65229064540208	0.555773365851711	0.114396694090591	0.374099158718836
Merged-chr7-111122762-4	chr7	111122640	111122840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015573)	promoter-TSS (NR_015573)	-65.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	7.735642278376	7.93309663496658	7.32254775617884	7.76324096455012	7.5848194602802	7.82297647442311	7.97756569065149	7.89661276287899	0.146507997462156	0.460788399232263	0.742769152545537
Merged-chr17-57280583-4	chr17	57280484	57280684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	1484.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	7.60394822475803	7.59137033639251	7.9730810240954	7.79576520776593	7.41061180159376	7.19408185244643	7.66623980239974	6.95444280288253	-0.548646807391555	0.0105610569269501	0.0821288616850633
Merged-chr1-138323252-4	chr1	138323156	138323356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49518.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	7.54769697935083	8.26988277882544	7.48269454803936	7.33474803041805	7.89057856301015	7.99144917324615	7.67532201427471	7.32255129327083	0.0419869690964886	0.869624722711435	0.951054729822361
Merged-chr2-145794688-4	chr2	145794593	145794793	+	911.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	8577.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	4.25725592675592	4.47403406652896	4.56777599978658	4.56649407670551	4.40122837647777	4.81386961485882	4.65818459752566	4.35154780813698	0.186208051347459	0.621734013884466	0.837999133509723
Merged-chr2-113396107-3	chr2	113395992	113396192	+	868.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-44972.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	4.39646044049712	4.09772715774176	3.94179749321911	4.62535804388823	4.12152164029867	3.94959624092896	3.92627222673827	4.27407594598072	-0.580917839691071	0.197584421334428	0.49895982014778
Merged-chr9-21715460-4	chr9	21715351	21715551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8125.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	7.13177392847254	7.30775767468708	7.18108549575574	7.32310885415355	7.62071414218981	7.52391669167814	7.89844668648177	7.45966978073663	0.52342553234539	0.00542614508581141	0.0504740696632214
Merged-chr2-45270229-4	chr2	45270129	45270329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-152787.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	6.32518985520573	6.25882346353133	6.52005414786453	6.77225789090151	6.5118138103535	6.40430750234351	6.74926546418712	6.51540171693843	0.0723152582337871	0.760056670889964	0.905851390428209
Merged-chr5-105732668-4	chr5	105732583	105732783	+	966.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122768, intron 2 of 2)	intron (NM_001122768, intron 2 of 2)	31873.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	5.03743967565769	5.0320957202019	5.13314018392361	4.99902993504675	4.90437667814518	4.70154739425094	5.13761954058807	4.8592351207586	-0.264508603253312	0.40764430940498	0.703857141814714
Merged-chr11-116274166-4	chr11	116274055	116274255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146032)	promoter-TSS (NM_146032)	62.0	NM_146032	217337.0	Mm.29655	NM_146032	ENSMUSG00000020780	Srp68	2610024I03Rik	signal recognition particle 68	protein-coding	5.8337661277586	5.8081035497552	5.55885089252307	5.75887131054428	5.48272410303619	5.58835895698186	5.71217069861637	5.83063751431281	-0.155773187523159	0.554047975651211	0.800510731013571
Merged-chr15-38693374-4	chr15	38693252	38693452	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025494)	TTS (NM_025494)	31448.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	4.48267779050381	4.17986834191272	4.55588998137126	4.60056888283221	4.34146569958408	4.1668647080616	3.73621842835934	3.87169494545356	-1.00331873287184	0.0262664301284362	0.153549460423124
Merged-chr7-113378104-4	chr7	113378005	113378205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-8766.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	6.88543427884472	7.21363835605005	7.07711029701156	6.82705074707817	6.95829780395921	7.24168530917115	6.98136608191734	6.90887735919784	0.0301651765118123	0.883239294311214	0.956033847067461
Merged-chr7-128523556-4	chr7	128523427	128523627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013863)	promoter-TSS (NM_013863)	-56.0	NM_013863	29810.0	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding	8.1256793465056	8.1678639746815	8.23365123565416	8.13788747106499	8.0006490212708	7.83781004541502	7.98557223502395	8.07115018359453	-0.240251304996374	0.12340130710308	0.389533089639902
Merged-chr10-7792874-4	chr10	7792758	7792958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026141)	promoter-TSS (NM_026141)	-36.0	NM_026141	67418.0	Mm.38927	NM_026141	ENSMUSG00000015757	Ppil4	3732410E19Rik|3830425H19Rik|AI788954|AW146233|PPIase	peptidylprolyl isomerase (cyclophilin)-like 4	protein-coding	6.71422869935614	6.77388062622301	6.02398995242813	6.55239119106005	6.98703088696796	7.08321796265548	6.65127934380039	7.03480466525212	0.564641222012048	0.0199186028397788	0.127734217296032
Merged-chr8-13156049-3	chr8	13155948	13156148	+	957.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3113.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	3.70619459074416	3.51273395854972	3.48877906026303	3.18834643733602	4.00493564311893	3.9258635669916	3.14631669894165	3.70449514873973	0.789725563924254	0.164754988384502	0.455014756459103
Merged-chr4-108798683-2	chr4	108798583	108798783	+	669.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17595.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	3.20517560867162	3.44716004420175	3.32910745642173	3.09787801810636	3.25510277299532	3.71365349565121	3.53048842471317	3.32734586260086	0.680234194258672	0.206505890524623	0.510519685386641
Merged-chr16-92959166-2	chr16	92959066	92959266	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133092.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	3.16756210824756	3.07651274198494	3.23339259839215	3.69548045506395	3.28042169882301	3.46976722592113	3.64820970771287	3.61599720839654	0.588062074999602	0.320728041644953	0.63245145906536
Merged-chr16-35022921-3	chr16	35022823	35023023	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023587, intron 1 of 6)	CpG	502.0	NM_023587	70757.0	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	4.19446384335061	4.61227831197557	4.19509456231451	4.12495623052854	4.19122602563908	4.41313062738064	4.26619937577147	3.9908088177204	-0.174847941142284	0.675072512632846	0.866517345800829
Merged-chr4-66828868-4	chr4	66828778	66828978	+	986.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021297, intron 1 of 2)	intron (NM_021297, intron 1 of 2)	1327.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	5.64928474427964	5.31190016590791	5.48811158099344	5.40595996888557	5.71969818034786	5.77313603741497	5.98975825749074	5.45514561349995	0.48334209270301	0.0806870973198805	0.308129561678833
Merged-chr11-79287699-4	chr11	79287592	79287792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32997.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	6.66521963989651	6.93562444065675	6.37487398793369	6.69188943976065	6.73133764617689	6.78030847443524	6.73480555583369	6.80601363359568	0.10618033721117	0.619604786162098	0.836720209857499
Merged-chr5-21425276-2	chr5	21425176	21425376	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029195)	promoter-TSS (NM_029195)	373.0	NM_177869	330050.0	Mm.40655	NM_177869	ENSMUSG00000047221	Fam185a	4631428I10|AI847670	family with sequence similarity 185, member A	protein-coding	4.86952103793222	4.51830148567506	4.93826096967774	4.83205083885454	4.51434394841222	5.04191300432734	4.77569934003906	4.79535317604438	-0.0283025587625241	0.936280391740296	0.97690766292493
Merged-chr18-14657040-4	chr18	14656947	14657147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009280, intron 3 of 10)	intron (NM_009280, intron 3 of 10)	25867.0	NM_001161369	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	6.62059138518354	6.62503323969717	6.4894185752822	6.89413251225377	6.5668246076041	6.55798606185791	6.828949331524	6.79249376587556	0.010845522011793	0.960479283397206	0.985894969495656
Merged-chr2-113445690-3	chr2	113445656	113445856	+	962.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	4692.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	4.52409235297343	4.54253992214667	4.76567261415939	4.8845113070624	3.70761978593719	4.03178273136462	3.698105986411	4.27156435390559	-1.91334638134057	2.03455700220908e-05	0.000516693499927751
Merged-chr11-26640660-4	chr11	26640550	26640750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46730.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	7.86085972056764	8.12474157272398	8.19608531060969	7.82550625088457	8.04561994839194	8.16125933173958	7.9985760688025	7.42158712368639	-0.0911289370078024	0.663506479337753	0.860575753363866
Merged-chr3-95283034-4	chr3	95282940	95283140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173347)	promoter-TSS (NM_173347)	105.0	NM_199475	75007.0	Mm.279287	NM_133858	ENSMUSG00000038712	Mindy1	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|Fam63a|cI-40|mKIAA1390|ni	MINDY lysine 48 deubiquitinase 1	protein-coding	5.21049615500036	5.38201231759824	5.33544215498395	5.39619425429258	5.25125788837369	5.13979940981718	5.49903632752148	5.38943625092402	-0.0252716450001651	0.929852925431102	0.974727857709636
Merged-chr6-59024551-4	chr6	59024459	59024659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153574)	promoter-TSS (NM_153574)	-57.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	6.3369370381121	6.41988064855238	6.81766754483058	6.72866307617036	6.4134813009883	6.19818431068611	6.51256209346251	6.47581660268671	-0.279021089950235	0.22819070983312	0.537049703453888
Merged-chr5-149006297-4	chr5	149006129	149006329	+	830.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040429)	promoter-TSS (NR_040429)	-733.0	NR_040429	100503307.0	Mm.188008	NR_040429	ENSMUSG00000086610	Gm15408	-	predicted gene 15408	ncRNA	3.69627171193311	3.35198708485767	3.64201200277439	3.70978148560043	3.80412011328378	3.64313772780223	3.62766775305596	4.28341976575397	0.752332573342678	0.137579646229963	0.412622999157398
Merged-chr8-94387504-4	chr8	94387384	94387584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357205, intron 1 of 7)	intron (NM_001357205, intron 1 of 7)	1055.0	NM_022331	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	8.06454631456967	8.07172353359054	7.53311998581938	7.32248335773328	7.75354765622975	7.99399754467934	7.51450676393198	7.34717892870733	-0.142171098425236	0.557963047600508	0.802948476800432
Merged-chr4-109360914-3	chr4	109360808	109361008	+	841.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007943, intron 13 of 24)	L2|LINE|L2	17852.0	NM_001159964	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	3.98244025861786	3.45337110832493	3.93835088680903	4.00703242503314	3.74025188137004	3.42144621943933	4.04893875292741	3.68564227825061	-0.353422921121831	0.493026210976775	0.763963269735953
Merged-chr16-37682786-4	chr16	37682682	37682882	+	988.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28414.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	4.933923647704	5.05669921533403	4.61123828668332	4.7532116467898	4.95523223875831	5.17746415412679	5.30376610224758	5.00098385735048	0.519293757726624	0.112843319105677	0.371420623567672
Merged-chr7-16895230-4	chr7	16895141	16895341	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010320, exon 4 of 4)	exon (NM_010320, exon 4 of 4)	3455.0	NM_010320	14709.0	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	5.01646740549022	5.22891291371733	4.86695992649853	5.21193331562882	5.32376797567089	5.19225756340157	4.92090419035499	5.32643588588666	0.194463958368877	0.537268171001449	0.790994501079945
Merged-chr19-11602177-4	chr19	11602078	11602278	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026835, intron 2 of 6)	intron (NM_026835, intron 2 of 6)	2626.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	4.80429656647822	5.02841375437128	4.64328574113942	4.4849467494016	4.92263963425882	5.12092203104001	4.92469902005612	5.01151930472377	0.50778794729118	0.136804896548008	0.411349382676314
Merged-chr19-8819921-4	chr19	8819847	8820047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027412)	promoter-TSS (NM_027412)	546.0	NM_001081196	68693.0	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	8.17657943970402	8.02559240274264	7.79225981444678	7.7298063601254	8.26215327121506	8.14990707510272	8.23581520635421	8.06107007274092	0.315167753612498	0.0747171081028667	0.294772699127256
Merged-chr1-131678222-4	chr1	131678120	131678320	+	844.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10475.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	3.83157893802937	3.59075357839429	4.12746924973095	3.97286914744098	4.11637472406596	4.00869594901932	4.4153850270608	3.93590352046827	0.624216428207117	0.169183505779395	0.46170705970244
Merged-chr7-25239394-4	chr7	25239317	25239517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1566.0	NM_001031667	606496.0	Mm.491101	NM_001031667	ENSMUSG00000057177	Gsk3a	2700086H06Rik	glycogen synthase kinase 3 alpha	protein-coding	7.13466696308615	7.71473146463736	7.41196347623574	7.35023356080967	7.74188750989978	7.67530643633307	7.65700372362295	7.21445859291396	0.226380758829828	0.284165782637912	0.596140750009614
Merged-chr11-43634225-3	chr11	43634151	43634351	+	680.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32689.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	3.68024775667633	3.95717328999438	3.83647903952208	3.59467134786302	3.73386807230571	3.79919886026802	3.91323946783773	3.67874195146418	0.0484688602428386	0.91651036343918	0.969045329388458
Merged-chr8-75109456-4	chr8	75109343	75109543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008566)	promoter-TSS (NM_008566)	-66.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	8.27086128280557	8.42844795123012	8.01540975219344	8.23180772432161	8.35325084078988	8.33738194165987	8.21627119137642	8.09080660833756	0.011464256230201	0.945809273806466	0.980637693555381
Merged-chr9-45386950-3	chr9	45386847	45387047	+	793.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022004, intron 1 of 7)	intron (NM_022004, intron 1 of 7)	-12762.0	NR_028499	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	3.34501506687445	3.57923880770461	3.57885551744998	3.29334950168505	3.76630426307606	3.64107324345047	3.39554406562893	3.8190144807314	0.712872910898232	0.155158783815969	0.440759618148689
Merged-chr2-153445019-4	chr2	153444919	153445119	+	821.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001986)	promoter-TSS (NM_001001986)	-540.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	4.24753295006683	3.67092681972341	3.76547831657454	3.79192345639039	3.73367031692024	3.88624426181216	3.45636241572456	4.00552629312225	-0.284703660568377	0.566230253697291	0.807835530970224
Merged-chr4-86679967-1	chr4	86679867	86680067	+	875.5	f0_balb.idr	Intergenic	Intergenic	-9908.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	3.59751522539263	3.26716097055895	3.64644487100152	3.83162314642601	3.12815437138431	3.1660427049118	3.3122386123304	3.54565272434527	-1.09093914427205	0.0536570976564206	0.241777780687879
Merged-chr4-130107508-4	chr4	130107414	130107614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026441)	promoter-TSS (NM_026441)	-42.0	NM_026441	67898.0	Mm.20818	NM_026441	ENSMUSG00000028779	Pef1	2600002E23Rik|Peflin	penta-EF hand domain containing 1	protein-coding	5.96139797109804	6.56488384651135	5.54786973850941	6.0731303976493	6.62211246788219	6.41363862070342	6.04439167799677	6.37700637317854	0.439861998177019	0.135600393540689	0.409916776175686
Merged-chr10-41923645-7	chr10	41923523	41923723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 15 of 17)	B1_Mus2|SINE|Alu	36184.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	4.93039749050066	5.16152741615589	5.19787280295144	4.26377706445939	5.09814262119897	5.24595772431965	5.28576001105211	5.13268150898714	0.509919406499846	0.174321755201879	0.468688079380318
Merged-chr3-152210916-4	chr3	152210801	152211001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356364)	promoter-TSS (NM_001356364)	479.0	NM_001355374	51886.0	Mm.278922	NM_057172	ENSMUSG00000028034	Fubp1	9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4	far upstream element (FUSE) binding protein 1	protein-coding	6.95463720932978	6.73526134385304	7.08893257044479	6.65318677548836	6.86610695320184	7.19435155019278	6.86873095825124	7.09535924609361	0.212355200178952	0.319220763794685	0.631103362694156
Merged-chr2-105835075-3	chr2	105834970	105835170	+	671.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023876, intron 4 of 9)	intron (NM_023876, intron 4 of 9)	69494.0	NM_023876	77766.0	Mm.3608	NM_023876	ENSMUSG00000027167	Elp4	A330107A17Rik|Paxneb	elongator acetyltransferase complex subunit 4	protein-coding	3.02374087408328	2.81040478092074	3.21578046997317	2.92340180654389	3.53723512506014	3.330137918385	3.41922875988139	3.43230289980007	1.67842972555576	0.0026333125319049	0.0288630355264026
Merged-chr10-34187937-3	chr10	34187844	34188044	+	675.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	19607.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	4.03070058985488	4.16586133456924	4.03130463533052	4.06123879412542	3.68893032011112	3.89261359695831	3.86649124293828	4.20367325784227	-0.422898618523861	0.337373314140551	0.647065507846796
Merged-chr17-33999651-4	chr17	33999522	33999722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001892, intron 2 of 7)	CpG-6270	711.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	6.96311835890254	7.06863399056335	6.72255230598076	6.02124682472831	7.16594744879056	6.8078059448676	6.80097142988961	6.45540360007285	0.130815944657076	0.652878952236592	0.854769822525583
Merged-chr8-47714140-4	chr8	47714047	47714247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172407)	promoter-TSS (NM_172407)	-216.0	NM_172407	70925.0	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	9.0123261553735	8.92837307820998	8.8826311107148	8.92216911268265	8.90554527016156	8.98534795513822	9.13522754491	8.60826158814535	-0.0176592355769183	0.913481511783343	0.967555550173756
Merged-chr13-5787306-4	chr13	5787206	5787406	+	812.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70786.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	3.54024470195863	4.1254260427762	3.60242188308142	3.70372405884137	4.21078244214762	3.94524213442217	3.90537712117306	3.60060025744676	0.491014413260462	0.325719043671163	0.637265490488708
Merged-chr3-152104594-3	chr3	152104502	152104702	+	813.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016867, intron 4 of 5)	ID4_|SINE|ID	61298.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	4.17980598058664	4.40813441513301	4.33721800357433	4.3538762450576	3.47399046988398	3.59979264461074	3.60103889577553	3.61214730222503	-2.29498083106256	2.09503176730892e-06	6.81857641359312e-05
Merged-chr6-143073602-3	chr6	143073487	143073687	+	780.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362115, intron 7 of 26)	intron (NM_001362115, intron 7 of 26)	26565.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	3.4580594903571	3.38298366354072	3.51271107996405	3.66286540173317	3.29074209262354	3.51607466691339	3.20601957726763	3.66039720119731	-0.301987354065062	0.56756411462782	0.808307057069209
Merged-chr4-141977537-4	chr4	141977445	141977645	+	897.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 5 of 31)	intron (NM_177868, intron 5 of 31)	-5447.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	4.67160011217592	4.53989056787514	4.54861010430645	4.64025569985073	4.60012781456314	4.68156121230355	5.2069996842247	4.66929692713521	0.435858144084267	0.228803987270442	0.537634986462524
Merged-chr1-149937989-4	chr1	149937919	149938119	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	MTD|LTR|ERVL-MaLR	-15580.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	5.08881625534235	5.16929522901355	5.39441348068525	5.33608713392243	5.33048190015124	5.33075891614198	5.06508516365946	4.97864411401675	-0.123284573799419	0.685722423688843	0.871574855121218
Merged-chr4-141656332-4	chr4	141656225	141656425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	7790.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	6.84789045635945	6.47663309102535	6.58071847981571	6.54944012672453	6.31220435323531	6.47703963984516	6.63780272259635	6.47783320831834	-0.203541919670069	0.354266467302962	0.661031778977135
Merged-chr3-135424058-4	chr3	135423986	135424186	+	967.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025902)	promoter-TSS (NM_025902)	-653.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	5.04168048887966	4.97551369734324	4.88718369792688	5.38509356813415	5.58505381631536	4.94157298381046	5.54577418746851	5.74919470245682	0.694141663375661	0.0421970629771929	0.208333546899744
Merged-chr8-124924480-1	chr8	124924380	124924580	+	935.3333130000001	f0_balb.idr	intron (NM_053207, intron 1 of 4)	MIRc|SINE|MIR	24774.0	NM_053207	112405.0	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	3.41361464665204	3.80667534851673	3.84341308340296	3.82242824257773	3.1739720284554	2.97390570144927	2.93745371301091	3.23050137921819	-2.49698552409986	9.57611101129126e-05	0.00195810975487705
Merged-chr2-52424913-4	chr2	52424825	52425025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182994)	promoter-TSS (NM_182994)	-51.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	7.52000648682409	7.69334080822645	6.95035759350636	7.47471125653886	7.61731233215424	7.74358208550047	7.81208185044886	7.52524168437417	0.311169992650635	0.136403219522618	0.41091739052877
Merged-chr6-124903796-4	chr6	124903699	124903899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008479)	TTS (NM_008479)	7906.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	6.74071685984253	6.5793547090914	6.18891500624899	6.62142161644617	6.99986186214158	6.91816012099783	6.8942651636087	6.80729553912688	0.504334287716268	0.0189162715971194	0.123245286831716
Merged-chr11-70410149-4	chr11	70410017	70410217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029231)	promoter-TSS (NM_029231)	-86.0	NM_029231	75273.0	Mm.340601	NM_029231	ENSMUSG00000018921	Pelp1	4930563C04Rik|MNAR	proline, glutamic acid and leucine rich protein 1	protein-coding	5.78807137556307	5.93695529687648	5.54961552172479	5.72788921292719	5.86337530547567	5.93987959794529	5.55060566712282	6.14115466055901	0.211570744880032	0.43148619204984	0.721710551668303
Merged-chr11-113787398-7	chr11	113787330	113787530	+	843.595215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172800, intron 44 of 44)	intron (NM_172800, intron 44 of 44)	-35615.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	2.89327813138435	2.79839044076112	3.06580913089179	2.71879060045345	2.87483449768458	2.87122690915447	2.88326306539076	2.89218611297767	0.064649109635532	0.915656280387027	0.968763998229684
Merged-chr4-43559878-4	chr4	43559794	43559994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011602, intron 1 of 56)	intron (NM_011602, intron 1 of 56)	2689.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	6.80496455644707	6.77613856859689	6.88867816544905	6.74154411010791	7.15388644659258	6.78400276766172	6.97975428748933	6.9230850808861	0.249174476194465	0.208840297218165	0.513218354454688
Merged-chr17-62649788-4	chr17	62649691	62649891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010109, intron 2 of 3)	intron (NM_010109, intron 2 of 3)	231526.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	4.00453828208842	3.85907960079939	4.76512034399095	4.5844499048614	4.54522594943025	3.9467010025854	4.64306182766278	4.5552386095025	0.202382085631306	0.678268076244682	0.868034533256964
Merged-chr11-74501006-4	chr11	74500904	74501104	+	793.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	89154.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	3.75871996515553	3.87234010687087	3.70522415412768	3.76678006326682	3.75608255963298	3.58020010328833	4.18104023586235	3.85866255665006	0.244357333888305	0.600391568061203	0.826786119085537
Merged-chr10-20312951-4	chr10	20312874	20313074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025392, intron 1 of 12)	CpG	505.0	NM_001025393	72567.0	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	7.47018991296962	7.51658239693776	7.4521483924622	7.48648136176296	7.56977079088977	7.64875452781098	7.85276130573437	7.54069225456523	0.230303192242046	0.182663408963354	0.479275980042856
Merged-chr1-35995418-4	chr1	35995335	35995535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-72965.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	6.55020453919533	6.46383124154129	6.74329827266927	6.42787223237003	6.57589523021457	6.46310102763297	6.46933331507734	6.33910662984812	-0.105150826602594	0.627239903031581	0.84109773851067
Merged-chr17-13056357-4	chr17	13056258	13056458	+	916.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4078.0	NM_001013832	436440.0	Mm.335670	NM_001013832	ENSMUSG00000071311	Gpr31b	12-HETER|GPR31c(t)|Gpr31|Gpr31c	G protein-coupled receptor 31, D17Leh66b region	protein-coding	4.90776431108261	4.59480048618406	4.25086438203982	4.05896886175091	4.67362734166757	4.61360512214771	4.58082777349375	4.34541425945945	0.176604171089899	0.673491620429185	0.865752727922578
Merged-chr2-181240619-4	chr2	181240527	181240727	+	967.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183162, exon 2 of 19)	exon (NM_183162, exon 2 of 19)	1400.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	4.0156497413307	4.43210271680022	4.67601612622321	4.23058633074761	4.94280135497758	4.89172991974056	5.0873537203068	5.34231929617078	1.51378961005027	4.78898250946186e-05	0.00108940551627033
Merged-chr9-65032390-4	chr9	65032324	65032524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028906)	promoter-TSS (NM_028906)	-34.0	NM_028906	74388.0	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	6.51337901478283	6.20575424940014	6.06298181614951	6.38628292960758	6.61652377309175	6.42802115558673	6.16023926230985	6.41132806096199	0.16963764227345	0.475859261466906	0.752603574391689
Merged-chr17-26513295-4	chr17	26513208	26513408	+	972.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4836.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	4.86181561218412	5.00715634776116	5.30478915554208	5.19037491784445	4.85029869539451	4.55004930688426	4.94726655722035	5.09953322467716	-0.447560642790243	0.185630397658513	0.483574244399563
Merged-chr9-50711560-4	chr9	50711450	50711650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311069, intron 1 of 19)	intron (NM_001311069, intron 1 of 19)	16434.0	NM_178118	330938.0	Mm.82598	NM_178118	ENSMUSG00000032064	Dixdc1	4930563F16Rik|BC048182|Ccd1|Ccd1Aalpha1L|Ccd1Abeta1L|Ccd1BalphaL|Ccd1BbetaL|Ccd1CL|mKIAA1735	DIX domain containing 1	protein-coding	6.10981983082523	6.15085543277674	6.0523277277208	5.7907482065902	5.94386020919593	5.59701612669687	5.57214362565551	5.70566645346006	-0.477228013039393	0.0736699728176217	0.292391705870387
Merged-chr4-11558872-4	chr4	11558795	11558995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256145)	promoter-TSS (NM_001256145)	-25.0	NM_001039556	623474.0	Mm.491200	NM_177285	ENSMUSG00000078773	Rad54b	E130016E03Rik	RAD54 homolog B (S. cerevisiae)	protein-coding	7.26741399787876	7.03061405420266	7.15764098838764	7.34863842841442	7.38993397905278	7.17446386625227	7.46365380026773	7.2203805757997	0.145585699695186	0.444596600581992	0.731001411006229
Merged-chr5-105557969-4	chr5	105557848	105558048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	38477.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	8.71034659547422	8.79311478707069	7.98105014809461	8.41737141605601	8.8321604604683	8.74786494939842	8.59885013648187	8.5165510261923	0.210684888943146	0.303478330051948	0.616088188202829
Merged-chr17-74440704-4	chr17	74440609	74440809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 5 of 8)	intron (NM_001033367, intron 5 of 8)	18399.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	6.62134858925421	6.82381685486804	6.62251566714284	6.62599754144369	6.65277734417205	6.76721563913899	6.4924211731603	6.39800216379801	-0.128006548964199	0.545701031779356	0.795980613958413
Merged-chr17-44116194-3	chr17	44116111	44116311	+	734.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-10402.0	NM_001357996	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	3.65190099375081	3.50361943165276	3.83011211597188	3.83132126712552	3.16851981316857	3.24296439983965	3.12134789271485	3.1982281736111	-1.97442078392068	0.000453895797966028	0.00713355023259525
Merged-chr17-47792672-4	chr17	47792581	47792781	+	833.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001161723)	TTS (NM_001161723)	6937.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	3.67319837295189	3.33647485223485	3.33419163073336	3.30315900515997	3.58345940606161	3.5135267591784	3.55544701247257	4.01715975902256	0.867204267561081	0.090987303259069	0.329620585233982
Merged-chr3-131965652-3	chr3	131965554	131965754	+	919.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119638.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.58922357577739	3.52232498139075	3.64849857204416	3.98950982081763	4.04099825981491	3.64494419643835	4.18059556895015	3.85825807658313	0.6552339768149	0.18947526932254	0.488381683690353
Merged-chr3-126770250-4	chr3	126770125	126770325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025439, intron 5 of 19)	intron (NM_001025439, intron 5 of 19)	173161.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	5.63490443137195	5.29219816610298	5.99857817671096	6.03340855948661	5.95068104347185	6.0410607404905	6.04873229548033	6.07558784035056	0.38284133553474	0.176746032375694	0.47190839260548
Merged-chr14-63424923-3	chr14	63424819	63425019	+	677.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7732.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	3.68867284799657	3.40847332041079	3.36928581899593	3.64632551095274	3.5811056369932	3.65534488727773	3.09462132611223	3.53722826965114	-0.174917722111505	0.747782634790939	0.90068822490119
Merged-chr6-57581006-4	chr6	57580910	57581110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025992)	promoter-TSS (NM_025992)	18.0	NM_025992	67138.0	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	6.5289693507205	7.03827522189243	6.95084620258516	6.98644659153358	7.05870590448046	7.08849158376892	7.12587872240467	6.54315422943565	0.109901860785949	0.632540583658968	0.843973166742038
Merged-chr17-81574961-2	chr17	81574861	81575061	+	605.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	163426.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	3.02807884746582	2.9083979602138	2.92321711505064	2.62281815788511	2.7253803094199	2.71312636898169	2.60264840582908	2.6086306184311	-1.02528435388171	0.130155561191061	0.401575322497554
Merged-chr16-69667935-4	chr16	69667833	69668033	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	132448.0	NR_130991	78110.0	Mm.211406	NR_130991	ENSMUSG00000107073	4930428D20Rik	Gm43265	RIKEN cDNA 4930428D20 gene	ncRNA	4.6673434128731	4.71813056362845	5.32750555738162	5.531271129148	4.80285174306795	4.56666391780678	4.80711350998168	4.90074908814419	-0.701122321722163	0.0712694149044343	0.286439184013374
Merged-chr14-65102226-4	chr14	65102113	65102313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4107.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	5.50623720933925	5.78000463382422	5.47619887087278	5.99477201778335	6.09900638739293	6.1813834812803	5.97691504323696	5.82628066110856	0.475203224977852	0.0843274595226307	0.315948423055718
Merged-chr3-51046137-3	chr3	51046031	51046231	+	752.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-178316.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	3.12217596400701	3.30728911890276	3.29765808449462	3.94348639465188	2.72250491344197	2.79459427098848	2.98209533384229	3.18186338909588	-2.22749058930343	0.00175734800195808	0.0211582366056463
Merged-chr13-17960807-4	chr13	17960710	17960910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16593.0	NM_019491	56044.0	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	5.55680199819237	5.02890159827729	5.60854213479821	5.76756216082492	5.41500278418365	5.30942752743499	5.45006575805346	5.44581681370987	-0.215179766979217	0.483202022899388	0.757690322031053
Merged-chr2-155710764-4	chr2	155710674	155710874	+	851.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145537, intron 8 of 10)	intron (NM_145537, intron 8 of 10)	-18390.0	NM_001163452	56407.0	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	3.78497025076101	3.75031318165182	4.2596835885595	4.10922240767308	3.93212874661851	4.01712475360571	4.15887239062137	4.08796521448093	0.131308352731061	0.767079935873719	0.908863633051277
Merged-chr16-93028878-4	chr16	93028761	93028961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-202787.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	7.52075847150296	7.61634756303839	7.3268744338575	7.36046084784201	7.40792566506825	7.6527128618074	7.56354441012631	7.34268045523136	0.047160359354553	0.797302760291625	0.921600110017986
Merged-chr12-79017480-4	chr12	79017390	79017590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10213.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	7.74400218770862	7.95265929134158	7.87956070906181	7.63170594810364	6.48597235500564	6.37813852680076	6.41923967224156	5.95308915121793	-2.03422616092177	1.51133916736453e-20	5.46111562821444e-18
Merged-chr10-21849860-1	chr10	21849760	21849960	+	675.0	f1_balb.idr	Intergenic	Intergenic	-32324.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	2.072109772072	2.14486971348816	2.13433078136511	1.86872205192135	1.64137168745051	1.72210613820756	1.70664961360134	1.86585858848722	-3.43814071754004	0.00371069589371074	0.0377589168003484
Merged-chr17-56612098-4	chr17	56611992	56612192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1303.0	NM_018730	54217.0	Mm.11376	NM_018730	ENSMUSG00000057863	Rpl36	-	ribosomal protein L36	protein-coding	4.8172736455975	4.96549471435263	4.92723753683157	4.60965333264852	4.8295798166508	5.13394914268414	4.67710092924408	5.17563275248646	0.281457301578732	0.412831769043511	0.707849408347942
Merged-chr3-51720445-3	chr3	51720355	51720555	+	966.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	RMER19A|LTR|ERVK	59276.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	4.3957357153086	4.45225208664631	4.88136529062161	4.50648274546196	4.12583912960611	4.01052329345696	4.19701542181694	4.30627418056046	-0.973180234595383	0.0158877992620609	0.109147540167381
Merged-chr6-135169433-1	chr6	135169333	135169533	+	946.3333130000001	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1218.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	3.59848940413043	4.07752974705083	4.06606752395719	4.11638795107429	3.26465982762616	3.32582120138108	3.46860706074807	3.35090021927633	-2.13915606746189	7.83394634823403e-05	0.00165065139587514
Merged-chr13-12273060-4	chr13	12272898	12273098	+	982.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033268, intron 18 of 20)	ID2|SINE|ID	-14885.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	3.50312671108454	3.39247206936383	3.97702597839593	3.92564997216492	3.83851214636227	3.80017059684307	3.66675474662296	4.09971664446582	0.368973684698426	0.468359501845778	0.747675629808035
Merged-chr11-70654633-4	chr11	70654535	70654735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011072)	promoter-TSS (NM_011072)	15.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	5.63900914410682	5.86961951826375	5.11213392989799	5.11261075478705	6.16154004383696	6.20772544824275	5.78719801529521	6.2137080748152	1.03735028386366	0.000730087953526275	0.0104772037185578
Merged-chr9-61020127-3	chr9	61020017	61020217	+	881.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040767)	TTS (NR_040767)	3048.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	3.81797374101697	4.00201994631755	3.76477420975564	3.79534393869958	4.25009141857234	3.88425633819374	3.69484879756793	3.96506314775998	0.358851998334879	0.430858407745081	0.721309079893587
Merged-chr14-27340862-3	chr14	27340790	27340990	+	785.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	PB1D10|SINE|Alu	4853.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	3.44556551942107	3.46058310824086	3.38995989034035	3.48110619925685	3.64243033070544	3.31613845276919	3.31972341919368	3.497780318446	0.0440760492498651	0.931122328445497	0.975254729027921
Merged-chr2-101781477-4	chr2	101781383	101781583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	16224.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	7.57529067640424	7.64913373564899	7.50381971289869	7.6922771104426	7.47617242893546	7.67167508745236	7.68075573747408	7.41144191671046	-0.0674598042314832	0.699548625095776	0.878859435133761
Merged-chr7-135914438-4	chr7	135914343	135914543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-198064.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	6.28136264788747	5.93189779424359	6.36896287460901	6.47149536426835	5.98992190159328	5.85289338136785	5.92682455731414	6.14596028367612	-0.467860063344396	0.0623228392683819	0.264225229393303
Merged-chr7-19699133-4	chr7	19698995	19699195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009696)	promoter-TSS (NM_009696)	93.0	NM_001305843	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	6.48409561983773	5.87319071831037	6.36100937471169	6.03014730516199	5.51652955926709	5.91774801219034	5.95148047277886	5.93286611817614	-0.58001790534842	0.0359443122221703	0.188358992833826
Merged-chr4-24620588-4	chr4	24620499	24620699	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355618, intron 9 of 9)	intron (NM_001355618, intron 9 of 9)	124148.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	4.96103532526222	4.77246126068207	4.8533113652676	5.24475158851892	4.86056761572206	5.02795687280494	5.21442068923259	4.73170843169595	-0.0411076678288492	0.905023690112964	0.964698113671839
Merged-chr1-182868072-4	chr1	182867999	182868199	+	799.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356462, intron 5 of 8)	intron (NM_001356462, intron 5 of 8)	-86689.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	3.88028441000629	3.81994199595848	3.93047210709714	3.99541549509012	3.763570541192	3.71744929293531	4.17355373059569	4.02181660383512	0.0453262302182795	0.919407703535846	0.970295657569474
Merged-chr15-9747616-2	chr15	9747516	9747716	+	706.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305042, intron 1 of 36)	intron (NM_001305042, intron 1 of 36)	1252.0	NM_177123	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	3.03559253860819	2.87713277838645	3.08966706415497	2.98060072861716	2.76129462416824	2.75646193978798	2.84902583707353	2.91900148102329	-0.80166961934524	0.192173239284743	0.491756507012104
Merged-chr14-54900560-4	chr14	54900438	54900638	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6395.0	NM_019402	54196.0	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	5.07265817565449	5.07156741942759	4.77097893774788	5.20437473753506	5.54776063359716	5.03132750515262	4.86979334979665	5.31421987422674	0.336535630857591	0.321862766885045	0.633337920661695
Merged-chr4-6924877-3	chr4	6924783	6924983	+	817.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145711, intron 1 of 8)	intron (NM_145711, intron 1 of 8)	65840.0	NM_145711	252838.0	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	3.34918471648695	3.18261925648565	3.82854618127019	3.717245301748	3.53480109684304	3.13156242603746	3.15254533225706	3.22626033608088	-0.926866919407955	0.122027727176471	0.387171774658734
Merged-chr2-38483522-4	chr2	38483417	38483617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28180.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	7.22473096671011	7.14869472192516	7.09879079482317	7.34099747900043	7.32945936664311	7.35817509941724	7.21156603918749	7.35620835709299	0.134239822706218	0.459045675869807	0.74170765693035
Merged-chr10-21918860-4	chr10	21918769	21918969	+	762.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 1 of 13)	intron (NM_001161845, intron 1 of 13)	36685.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	4.83513510676252	4.92870153609856	4.80060583127065	4.88897688993497	4.63473508736066	4.86136813130028	4.40993298797813	4.42642057520684	-0.576581575763292	0.0995866319898678	0.346167743243971
Merged-chr12-71008023-3	chr12	71007931	71008131	+	812.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045055, intron 3 of 3)	intron (NR_045055, intron 3 of 3)	7792.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	3.99409385619839	4.04804525427275	4.0916764203491	4.47594457291183	3.83646630989471	4.167605440365	4.02697190476858	4.04169103525285	-0.444674329515363	0.313618304473666	0.625522943764707
Merged-chr3-96284633-3	chr3	96284536	96284736	+	865.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010186, intron 5 of 5)	intron (NM_010186, intron 5 of 5)	9333.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	3.77471609691161	3.89967383408444	4.02236300400416	4.15550232283405	4.14309838000377	3.65321844805543	3.81334230092851	3.82646805375309	-0.267617230409915	0.56686642290798	0.808094873248425
Merged-chr3-138964066-3	chr3	138963967	138964167	+	842.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 5 of 13)	intron (NM_001356388, intron 5 of 13)	111134.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	3.87511954893638	3.71361920054366	3.73632665484452	3.41977754895128	3.58627588869392	3.51681223945586	3.67089445314476	3.52116159387244	-0.341619884186545	0.491210244048409	0.762869915367466
Merged-chr7-140882352-4	chr7	140882255	140882455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177804)	promoter-TSS (NM_001177804)	-39.0	NM_011875	23997.0	Mm.29760	NM_011875	ENSMUSG00000025487	Psmd13	S11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 13	protein-coding	6.97424499234857	7.36895336722113	6.58647521029535	6.84724777792075	7.18253440411296	7.05933649206271	7.33302249038033	6.99600685236162	0.239787528103982	0.296971962146304	0.609027482805879
Merged-chr5-102052369-4	chr5	102052258	102052458	+	896.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	17563.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.58440283344454	5.10720562394061	5.75633880029577	5.58339462796127	4.68664449323028	4.73080597968027	4.75499028301699	4.85763985160321	-1.480652168084	7.82374437733317e-06	0.000221162152912708
Merged-chr13-22022470-3	chr13	22022371	22022571	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Ser-TCG|tRNA|tRNA	-12730.0	NM_019429	54373.0	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	4.94672700714951	5.01969319595546	4.81719423386394	4.81717584331567	3.98508271000165	4.64087140821713	4.39747026782742	4.36674497686371	-1.22357687671926	0.00150685996662329	0.0187413569044696
Merged-chr7-45593275-4	chr7	45593161	45593361	+	977.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18085.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	5.38414445342729	6.08363532926139	5.41475539605753	5.23522118874482	5.76429586822756	5.70086627246702	5.38794417731671	5.0099166336869	-0.127450112985644	0.720506957960074	0.888297446229953
Merged-chr10-12867742-3	chr10	12867573	12867773	+	942.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5938.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	3.74599256647089	3.36794498244438	3.60098335056985	3.45688185100433	3.35410702473922	3.66577487495629	3.23865970159905	3.64920365859741	-0.195885349904827	0.708223962089167	0.882710273980338
Merged-chr9-13526435-5	chr9	13526263	13526463	+	921.3666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93626.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	4.26409304233234	4.25002526470362	4.73365643159235	4.26865898806334	4.09908841276714	4.83502785280614	4.14913896657	4.30839242716621	-0.0337296572833728	0.937952154754774	0.977460307804652
Merged-chr15-89075990-4	chr15	89075896	89076096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040417)	promoter-TSS (NR_040417)	-68.0	NM_026485	67976.0	Mm.284710	NM_026485	ENSMUSG00000015363	Trabd	5730502D15Rik|AL023039	TraB domain containing	protein-coding	7.70468317119422	7.83660806922886	7.40766346599547	7.27519682358485	7.69177753198491	7.56490335940324	8.13171858938747	7.41269177146251	0.210052173184461	0.355231593529225	0.661813745489821
Merged-chr18-32067888-4	chr18	32067771	32067971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173441, exon 1 of 14)	5' UTR (NM_173441, exon 1 of 14)	137.0	NM_173441	73473.0	Mm.66853	NM_173441	ENSMUSG00000024384	Iws1	1700069O15Rik|3000008H23|AL117927|AW214353	IWS1, SUPT6 interacting protein	protein-coding	6.8313287586382	7.45655484138649	7.40030993030764	7.00915254415786	6.85796447129213	7.31944917111886	6.81233933815686	7.26786587853007	-0.16183355618175	0.496111443964155	0.766102236081152
Merged-chr5-105354230-3	chr5	105354106	105354306	+	835.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7730.0	NR_132129	634650.0	Mm.458435	NM_001039647	ENSMUSG00000092021	Gbp11	EG634650|Gm7141	guanylate binding protein 11	protein-coding	3.79949726596114	4.00640538328741	3.51447603467351	3.38757650196118	4.01251727913327	3.81299627311207	3.78416070951793	4.03144916728861	0.655730682511663	0.180267927362991	0.476611410681675
Merged-chr9-56592870-4	chr9	56592762	56592962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42786.0	NM_001311076	235402.0	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	6.0033995901197	6.11273699443665	5.77142708380955	6.00475915692032	5.98468954530809	5.69761992412162	6.01541450936116	6.04199286292676	-0.0587543797842419	0.812417913476493	0.927548676109061
Merged-chr1-131525303-4	chr1	131525225	131525425	+	902.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081011, exon 2 of 23)	5' UTR (NM_001081011, exon 2 of 23)	2036.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	3.9255794024414	4.22395816464973	4.12709313071792	4.17376675335876	4.37842328634787	4.20346617785046	4.06247379521999	4.02815865199752	0.155731301853316	0.706545396301396	0.882113546590814
Merged-chr15-62038992-5	chr15	62038839	62039039	+	825.617798	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132746)	promoter-TSS (NR_132746)	-318.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	3.26634526221866	3.36882571163345	3.38713001348107	3.44226518678754	3.59264691536969	3.44081214314014	3.43015083831478	3.59668731154703	0.494289802836139	0.323223854143892	0.634704003368685
Merged-chr16-62826580-6	chr16	62826474	62826674	+	891.1527710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026577, intron 3 of 9)	intron (NM_026577, intron 3 of 9)	11898.0	NM_026588	68159.0	Mm.386793	NM_026588	ENSMUSG00000047854	Stx19	A030009B12Rik	syntaxin 19	protein-coding	3.169697939313	3.01161475701887	3.230016673461	3.05585523469434	3.31669432793244	3.40094604635787	3.43018606481866	3.22832040951123	0.870896071247039	0.102077270045238	0.350783967080574
Merged-chr1-128615634-3	chr1	128615559	128615759	+	980.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23360.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	4.92578300784499	4.31814353925632	4.89720404866366	5.09512067195542	4.09662840983242	4.10480303109546	4.01913639014343	3.91259877938319	-1.93862057079999	7.87955799010213e-06	0.00022265147208316
Merged-chr16-58408349-4	chr16	58408216	58408416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028523)	promoter-TSS (NM_028523)	-219.0	NM_001356484	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	8.02852989352599	8.29610271040488	8.26677002166246	8.58351389355356	7.72249947375269	7.83679119901152	8.11220560824366	7.68900850084176	-0.600986518992848	0.00188725634319477	0.0223515839022064
Merged-chr19-24965549-2	chr19	24965456	24965656	+	604.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-3940.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	3.71030945021403	3.52351061921519	3.36255148440158	3.62657695719707	3.81592461287774	3.60498116715242	3.69546322931684	3.98193720078194	0.662207652825486	0.168952407147109	0.46148598903734
Merged-chr14-25816633-2	chr14	25816533	25816733	+	643.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25522.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	3.18798713374263	3.02650660811174	3.07369619075861	3.17151936365836	3.19496558573089	2.98562022040974	3.17608638059283	3.01090176965961	-0.0765976503514596	0.892274308375842	0.95963001066564
Merged-chr2-145825410-4	chr2	145825308	145825508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	39292.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	6.66539215638114	6.28827154806443	7.15566092294182	7.5083356971621	6.43021858829721	6.50610784917768	7.16131871760567	6.8238853414524	-0.328530746661736	0.289474073369025	0.601502702330573
Merged-chr6-117825594-4	chr6	117825493	117825693	+	765.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER91B|DNA|hAT-Tip100	-15588.0	NM_001346649	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	3.73901891702745	3.88109062459354	3.6190729423884	3.93842329719671	3.94267701077295	3.97169455344006	4.37880814451624	4.0885576436039	0.79003937447546	0.0808644902538025	0.308509061037434
Merged-chr1-88589660-2	chr1	88589560	88589760	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38143.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	3.36609372469097	3.09299333931713	3.18873823244902	3.30947600542812	3.27107262115635	3.63678691961836	3.40708501903545	3.41897169994041	0.671174619765771	0.207253229814889	0.511181071672855
Merged-chr4-141794311-1	chr4	141794211	141794411	+	1000.0	f1_balb.idr	intron (NM_001355176, intron 1 of 8)	MIR3|SINE|MIR	699.0	NM_001277932	12371.0	Mm.88829	NM_015733	ENSMUSG00000028914	Casp9	AI115399|APAF-3|AW493809|CASP-9|Caspase-9|ICE-LAP6|Mch6	caspase 9	protein-coding	3.82164405431077	3.6704843812059	3.56387043583175	3.56904509141764	3.80440213679421	3.67966966822715	3.60585712879607	3.77244524912459	0.210314287290885	0.651235437334498	0.853855396950078
Merged-chr19-56681419-4	chr19	56681219	56681419	+	917.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41053.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	3.71337163468389	3.32285178295178	2.99444889140171	2.66658374108949	3.26159989768083	3.68952029968099	3.64953127880975	3.75691292897009	1.19361709428904	0.0727816022849607	0.290225303587743
Merged-chr2-116971825-3	chr2	116971732	116971932	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71680.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	5.14894335615182	4.66448145876343	5.02125187469279	4.86705492003384	5.03592169637975	5.25942352452047	5.18347642359486	4.8749663446079	0.320366872399811	0.325700627765628	0.637265490488708
Merged-chr12-79912448-3	chr12	79912342	79912542	+	753.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12291.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	3.29474271367528	3.28947240933793	3.41083126110789	3.64178010004462	3.17833223362832	3.3449404742201	3.39762199487763	3.6126233266589	-0.141025535511417	0.795317877776466	0.920823289538254
Merged-chr1-155144905-2	chr1	155144805	155145005	+	909.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008209, intron 1 of 5)	LTR33|LTR|ERVL	1909.0	NM_001355063	15064.0	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	3.39711029999208	3.11519916319678	3.28377781794012	2.95283098098338	3.33884942780987	3.67041551888003	3.2112746271225	3.4489082943673	0.864117517819058	0.120173879317636	0.383770315220511
Merged-chr12-52525058-4	chr12	52524955	52525155	+	974.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009706, intron 1 of 5)	intron (NM_009706, intron 1 of 5)	8978.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	4.66763519535792	4.76069940260098	4.66840042911489	4.66914292091627	4.40085568801179	4.19422626591995	4.6462663977427	4.42208827024692	-0.592895680073868	0.104521338718515	0.355556643135185
Merged-chr2-166674848-3	chr2	166674746	166674946	+	784.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	GC_rich|Low_complexity|Low_complexity	38986.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.20195344183932	3.98784130588842	4.32320987466638	4.0716299269452	3.87322578080667	3.93156187903414	4.09707849555494	3.91802854257182	-0.511108811526026	0.229446003290624	0.53847352368063
Merged-chr3-21934945-4	chr3	21934847	21935047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141705.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	6.37686422806164	6.34125984132714	6.37798608771349	6.7109665872469	6.60093351079545	6.60743062626104	6.59187709195639	6.35513498432806	0.0960286381294365	0.671099412181174	0.864507019889785
Merged-chr13-33964596-4	chr13	33964458	33964658	+	974.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163241)	promoter-TSS (NM_001163241)	-101.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	4.49076560880135	5.01609988559492	4.66419633420356	4.96810125856901	4.56512569758566	5.0900313445721	4.55991488786391	4.66117484192365	-0.175068990362673	0.640012147533546	0.847874046591045
Merged-chr13-108300557-3	chr13	108300457	108300657	+	793.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15780.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	3.70729402504063	3.64588844430755	3.89167344938638	3.70008449870928	3.22495870047773	3.27760257830383	3.83052247331066	3.43158611196341	-0.897455838785982	0.0932296816153058	0.333999476247635
Merged-chr2-112490308-3	chr2	112490212	112490412	+	950.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2652.0	NM_028844	74268.0	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	4.32117305707217	4.16042730969777	3.84015725471308	3.87799756800258	3.82887188912573	3.96202687848263	3.4651939474227	3.98825077343571	-0.64995952644255	0.178305607567582	0.474080715739156
Merged-chr17-4995533-9	chr17	4995412	4995612	+	942.2037349999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001085355, exon 1 of 20)	exon (NM_001085355, exon 1 of 20)	438.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	4.52092294825096	4.50042587893455	4.84352687291696	4.22897241085071	4.37265756855055	4.52345457928414	4.4174057298163	4.59759945222088	-0.110123888767141	0.776572090690041	0.912932991254018
Merged-chr1-153443229-1	chr1	153443129	153443329	+	575.0	f0_balb.idr	intron (NM_001033162, intron 6 of 9)	RLTR40|LTR|ERVK	18020.0	NM_001033162	71836.0	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	3.3702788558679	3.23618050464441	3.09837501484879	3.32817018583948	3.03244530382554	2.93655096794661	3.25544064802368	2.82913417092617	-0.966516405839413	0.1083570332921	0.363310926499097
Merged-chr7-96977888-2	chr7	96977802	96978002	+	648.666626	f0_balb.idr|f0_c57.idr	intron (NM_153591, intron 5 of 13)	intron (NM_153591, intron 5 of 13)	26375.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	3.82698212298765	3.96111956168089	3.82752798907122	3.72907411184523	4.07633690025675	3.52988410043786	3.70761018313457	4.01297383160474	0.0754838918541385	0.873093127936491	0.952427521124774
Merged-chr10-30787882-4	chr10	30787763	30787963	+	790.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	15463.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	3.13742744870359	3.61568955609598	3.62609434370069	3.59575915763011	3.68937044407396	3.7942214894855	3.50621692564684	3.4024640118351	0.300539742125338	0.570931226691093	0.810291876393379
Merged-chr18-39491590-4	chr18	39491484	39491684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4339.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	6.28753271751103	6.52895217294563	6.74698483733531	6.20849695322994	6.31153504633396	6.50492049307817	6.92530414995647	6.59704217136233	0.217415637010128	0.385857687646954	0.687291098196235
Merged-chr16-31838281-7	chr16	31838208	31838408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 13 of 22)	intron (NM_001357281, intron 13 of 22)	-40502.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	5.91659188462067	6.56895573401502	6.90555714584687	6.46769928987858	6.41032092724408	6.3056007318829	6.2570361742679	5.93851469770508	-0.396655853051322	0.153117196267072	0.437555330104179
Merged-chr3-135670710-3	chr3	135670619	135670819	+	901.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	20828.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	3.89451504797073	3.93423870676219	3.94967642716884	3.69221070546546	4.26254397187857	4.22804874146716	4.17414420139046	4.665158679355	1.26088055410419	0.00266758975169339	0.0291623976249092
Merged-chr11-62542814-4	chr11	62542716	62542916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-3555.0	NM_028448	73139.0	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	5.76090160007443	6.08260480201845	5.30713045746175	5.60276700619065	5.61147929746129	5.61487741936435	5.46953279764631	6.0540832626707	-0.0219610948749004	0.942897191946995	0.979358800297614
Merged-chr14-62218250-4	chr14	62218152	62218352	+	924.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74727.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	4.73835239641986	4.52927089069333	4.90750609429984	4.45978828791849	4.45222057426158	4.83688447270426	4.39290516612797	4.58312007770561	-0.188447945929881	0.614739362584997	0.834093272768538
Merged-chr18-39490283-2	chr18	39490183	39490383	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3038.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	5.89409612842725	5.87354521500134	6.02746399129894	5.86052658660304	5.97640359818668	5.8982646833414	5.88804545495448	6.25198348437111	0.161499727491285	0.508468915990289	0.773535236506654
Merged-chr5-99487134-4	chr5	99487055	99487255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	LTR33A|LTR|ERVL	-234228.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.78919560511093	5.74210808720593	5.83688916376837	6.04698949821211	5.68599434052314	5.51812204186108	5.85190523352073	5.5801485083623	-0.336590665744507	0.200120082410438	0.502109603648087
Merged-chr8-61540044-4	chr8	61539929	61540129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081390, intron 10 of 19)	intron (NM_001081390, intron 10 of 19)	51140.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	5.60322404120948	5.81589475985777	5.57588747850772	5.84751995123335	6.06353853121904	5.75337269053452	6.21585570794982	5.57198298145032	0.332106430816063	0.231525660297591	0.541100767478403
Merged-chr13-49108627-4	chr13	49108515	49108715	+	893.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 2 of 29)	intron (NM_001290313, intron 2 of 29)	39713.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	3.99424777072482	4.14809621406694	4.41120111595341	4.14456603198507	4.51601862500246	4.22481027141093	4.08245729716299	4.48478097241879	0.407471505474009	0.317329364689074	0.629239660385659
Merged-chr9-121332207-4	chr9	121332109	121332309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	34707.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	6.51313978911896	6.62337110488787	6.37182538326968	5.77631546374268	6.02194539113427	6.04035877210502	5.83190413401122	5.83226974275151	-0.633049955842858	0.0266916940188815	0.155181580378172
Merged-chr8-3754474-4	chr8	3754399	3754599	+	787.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SSU-rRNA_Hsa|rRNA|rRNA	-5515.0	NM_133238	170786.0	Mm.32510	NM_133238	ENSMUSG00000031494	Cd209a	CD209|CDSIGN|CIRE|DC-SIGN|DC-SIGN1|Dcsign|SIGN-R1|SIGNR5	CD209a antigen	protein-coding	5.02510276177417	5.72111386882599	5.10334713355649	5.58052003828005	5.16370090252159	5.98281287970073	5.15112337762641	6.09433913585093	0.459622990767632	0.226809555309741	0.535458618155624
Merged-chr6-31177033-4	chr6	31176942	31177142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	41432.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	5.800881916295	5.85985798445576	5.75346362380721	5.82578323243717	5.81058871478682	5.90350080988674	5.81879103802292	5.50550140011728	-0.0714721530364678	0.778158659372949	0.913566660130711
Merged-chr2-128803638-4	chr2	128803536	128803736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008587)	TTS (NM_008587)	-14667.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	5.85782960487732	5.71947680086966	5.96541791157683	6.32458353884958	5.39420360129659	5.42286109984996	5.35102929690753	5.55504605474495	-0.95839172855092	0.000757925411524631	0.010781873379674
Merged-chr9-71592332-2	chr9	71592232	71592432	+	655.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033208)	promoter-TSS (NM_001033208)	28.0	NM_001033208	102371.0	Mm.27585	NM_001033208	ENSMUSG00000041361	Myzap	AA407270|AV006038|Gcom1|Gm640|Grinl1a7|Myozap	myocardial zonula adherens protein	protein-coding	2.05667271795626	1.97827088661399	2.05697059545887	1.79285703940442	1.97430640867307	1.71488733133963	1.70028346973402	1.78123005414087	-1.37263207473886	0.159010627198092	0.446219364628123
Merged-chr5-43883960-3	chr5	43883833	43884033	+	782.122253	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	MTD|LTR|ERVL-MaLR	15124.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	3.4373453346779	3.46328950600643	3.43778652881399	3.50174682380141	3.6154746908003	3.49257036549728	3.30578007960754	3.82962813369555	0.370740910518154	0.462517021074654	0.744062113791058
Merged-chr14-33215061-4	chr14	33214971	33215171	+	796.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1752.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	2.81134355968145	2.88240007191997	2.74495846476697	2.62792974192641	2.78815481144233	2.98429666850033	2.9244566707566	3.04713471186726	0.786543442201472	0.198389098445998	0.49991636769525
Merged-chr6-119388806-4	chr6	119388727	119388927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355692)	promoter-TSS (NM_001355692)	-93.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	7.5224284801329	7.80016615018549	7.46703770521924	7.35644180765046	7.90650453406006	7.62509490399101	7.84432073129851	7.18169720809382	0.172197771899281	0.431043915121875	0.721454013555152
Merged-chr4-35131727-4	chr4	35131605	35131805	+	934.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-20350.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	4.09495948743438	4.45431987372752	3.88557313470889	4.13683485515887	4.27675866121207	4.35984992090953	4.12523394259721	3.99247853173301	0.0895864902905835	0.833162681579796	0.936237948428556
Merged-chr4-151977944-4	chr4	151977840	151978040	+	838.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172704, intron 11 of 15)	intron (NM_172704, intron 11 of 15)	11046.0	NM_175152	69876.0	Mm.226820	NM_175152	ENSMUSG00000039759	Thap3	2010013E08Rik|2210418H06Rik	THAP domain containing, apoptosis associated protein 3	protein-coding	3.85106549066076	3.89251787764269	3.9050679990838	4.12836518978196	4.08644311007296	3.91596210486821	4.20821392235511	4.2249725253976	0.398751695565488	0.352809692915818	0.659735532175456
Merged-chr15-100085114-4	chr15	100085017	100085217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 2 of 3)	B1_Mur2|SINE|Alu	46453.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	6.08914716178667	6.1142550177998	6.41926605565114	6.33656459166875	5.64269167863864	6.06423731172046	6.13954839516999	6.18618682015188	-0.368277069171806	0.151245395598721	0.434670974010633
Merged-chr8-14605674-1	chr8	14605574	14605774	+	694.166687	f0_balb.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-282862.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.81232610784505	3.76999730294655	3.59605160052605	3.47205119239783	2.79298748970779	2.88226639182429	3.06975923859713	2.93164096856166	-3.46159099978647	3.4013357727392e-06	0.00010507972177422
Merged-chr6-83634227-4	chr6	83634121	83634321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21895.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	6.4601079211664	6.16884405631968	7.26793121393946	7.22616006571189	6.23327740069987	5.82270555745196	6.46213744071108	6.63484517081397	-0.791792577218595	0.0141039533736625	0.100519890795807
Merged-chr7-135653263-2	chr7	135653163	135653363	+	694.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015548)	promoter-TSS (NR_015548)	-949.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	3.4673193906304	3.0510949594963	3.04881101981692	3.07709637732117	2.79378031875149	2.95755312655347	2.90960528051737	3.27373654541172	-0.721054804673997	0.24717927539396	0.558171577234536
Merged-chr19-59943543-4	chr19	59943439	59943639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033172)	promoter-TSS (NM_001033172)	115.0	NM_001164367	74998.0	Mm.24167	NM_001033172	ENSMUSG00000040022	Rab11fip2	4930470G04Rik|A830046J09Rik|AW558126|Nrip11	RAB11 family interacting protein 2 (class I)	protein-coding	7.94441772752401	8.02839460938206	8.69318861076505	8.21897513483255	7.29330080026353	7.63048128108733	7.35221633914149	7.63668365415987	-1.00241851421942	3.97996035151714e-06	0.000121219340120085
Merged-chr5-43293318-4	chr5	43293208	43293408	+	961.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57954.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	4.49282332441596	4.18418560598844	4.45078650850239	4.68681731445213	4.62948188459866	4.7467026436386	4.14327692213698	4.85320192197391	0.313542233030283	0.439543029088284	0.727400740914532
Merged-chr2-128741159-4	chr2	128741086	128741286	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	42271.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	5.75176320419829	5.34739815931717	5.58608041660266	5.34561394035905	5.43038482889196	5.68123819646523	4.87086564081313	5.60730923272678	-0.135893168020503	0.67308817164553	0.865589526337487
Merged-chr1-55210317-3	chr1	55210224	55210424	+	600.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356287, intron 1 of 7)	intron (NM_001356287, intron 1 of 7)	16458.0	NM_001356288	74013.0	Mm.292050	NM_028713	ENSMUSG00000025978	Rftn2	2700010E02Rik|3222401M22Rik	raftlin family member 2	protein-coding	3.1339898040236	3.01009685631544	2.97030798518828	3.01242885592764	2.67097493795085	2.81824004552811	2.70532052716239	2.8464913382643	-1.2955454034655	0.04145121556595	0.206181416685448
Merged-chr7-101381747-4	chr7	101381670	101381870	+	825.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	3648.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	3.91663874865126	3.72020301508853	3.64704709444163	3.83834168603252	4.07198169176504	4.13424681811943	3.90060514568458	3.91489063306173	0.61795634452734	0.157082960023115	0.443462024014805
Merged-chr6-84020214-4	chr6	84020114	84020314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310152, intron 1 of 53)	intron (NM_001310152, intron 1 of 53)	828.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	5.34786273644225	4.98760699149914	5.61480980908345	5.46770486817143	5.48117974304898	5.55169576163484	5.26197761342387	5.11904094883492	-0.0153611961458918	0.960685278864567	0.986018439623899
Merged-chr2-73419374-3	chr2	73419253	73419453	+	691.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32873.0	NM_001276444	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	3.73907564344219	3.7627356380316	3.38549820971244	3.53490679023797	3.16787485885813	3.16791976383023	3.37283214804191	3.38372728747956	-1.2015408743706	0.0267599165120383	0.155441527610113
Merged-chr3-154596695-4	chr3	154596609	154596809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357674)	promoter-TSS (NM_001357674)	-2.0	NM_009968	12972.0	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	6.90678665708764	6.83815036736157	6.7730068610866	7.04246618319882	6.46201776352166	6.87623479926623	6.63505563232038	6.64872241670675	-0.353581084679759	0.09223497276779	0.332162566488162
Merged-chr19-8967029-4	chr19	8966920	8967120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026007)	promoter-TSS (NM_026007)	-21.0	NM_026007	67160.0	Mm.247762	NM_026007	ENSMUSG00000071644	Eef1g	2610301D06Rik|AA407312|EF1G	eukaryotic translation elongation factor 1 gamma	protein-coding	8.65340734812624	8.94831500564666	8.43872762834792	8.207224905537	8.68542128182741	8.75071583320124	8.6753460246316	8.52905946575181	0.0940074389654056	0.62786608536243	0.841351605797479
Merged-chr13-58443968-4	chr13	58443879	58444079	+	864.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40636.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	4.76739360359282	4.95387129052284	4.94949103418586	5.15254724327885	5.09191560019283	4.54396765746701	4.99076183844512	4.5077287686096	-0.300462630978494	0.408557368236835	0.70438176546703
Merged-chr3-145650755-4	chr3	145650662	145650862	+	997.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010516)	promoter-TSS (NM_010516)	-777.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	5.11890197862686	4.85768292206999	4.95721253561299	5.0107405168786	4.65813962001283	4.90689320324226	5.06384640251373	5.02135060195407	-0.153001230931542	0.639254151784759	0.84753238716798
Merged-chr2-119034850-4	chr2	119034736	119034936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173450)	promoter-TSS (NM_173450)	46.0	NM_173450	271842.0	Mm.33617	NM_173450	ENSMUSG00000027324	Rpusd2	4921503C21Rik|9630001E10|BB231107	RNA pseudouridylate synthase domain containing 2	protein-coding	6.88756572590119	6.89068731117424	6.42458543960312	6.73597571124803	7.00892657610398	6.80804264784478	6.49875450883093	6.76177704984806	0.0571366520102601	0.800389657625626	0.923040237917604
Merged-chr1-144140037-4	chr1	144139921	144140121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153171, intron 5 of 5)	intron (NM_153171, intron 5 of 5)	37351.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	5.52185012810124	5.38546440252316	6.00966180478535	5.70455048719762	5.26924033342655	5.25452454013244	5.29135170434026	5.46364762708463	-0.617347064347335	0.0363259540331808	0.189563422443385
Merged-chr2-144301061-6	chr2	144300970	144301170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	30166.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	5.53886237425819	5.3057517775267	5.78007113506997	5.59143646330365	5.03639191482567	5.45274447148014	5.48529272713683	5.53591981295395	-0.320227027268902	0.28509021274291	0.596866661479153
Merged-chr5-29735847-4	chr5	29735714	29735914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011847)	promoter-TSS (NM_011847)	-84.0	NM_001359198	23950.0	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	HSJ-2|Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	6.49274768713596	6.88621155181279	6.34960900644536	6.4161162467138	6.54048610836651	7.02299186789009	6.46066156214711	6.47210257936119	0.128106588673007	0.605633716706971	0.82897585326498
Merged-chr15-80563839-4	chr15	80563738	80563938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER46C|DNA|TcMar-Tigger	-3368.0	NM_001163189	383075.0	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding	5.37932783864318	5.41208313544796	5.06092738653983	5.4371578179823	5.31234860641542	5.2729525537519	5.38112090337291	5.12799905404008	-0.113420805136807	0.699090367395648	0.878624019192029
Merged-chr6-147091496-4	chr6	147091407	147091607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081237, exon 1 of 3)	5' UTR (NM_001081237, exon 1 of 3)	432.0	NM_001081237	232539.0	Mm.491206	NM_001081237	ENSMUSG00000040102	Klhl42	A330079N23Rik|AI450355|C230080I20Rik|Ctb9|Klhdc5|mKIAA1340	kelch-like 42	protein-coding	6.0602960850795	6.00474242166904	6.32205012892562	6.27082585973626	6.25879874252422	6.53280628869961	6.35975141732192	6.43822799872596	0.326336392566477	0.15464610792067	0.439914960084947
Merged-chr9-22117696-3	chr9	22117620	22117820	+	935.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357309)	promoter-TSS (NM_001357309)	-525.0	NM_001357312	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	3.88941715080442	3.50374407064969	4.02411734028138	3.68309907553999	3.79175485151586	3.7475041133681	3.77625361585865	3.83964379722544	0.0272844248915948	0.953528633328759	0.983444766711298
Merged-chr7-79935761-4	chr7	79935639	79935839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027420)	promoter-TSS (NM_027420)	-475.0	NM_027420	70420.0	Mm.34266	NM_027420	ENSMUSG00000039043	Arpin	2610034B18Rik	actin-related protein 2/3 complex inhibitor	protein-coding	7.41944538836936	7.30103083386074	7.09318231106164	6.95232813054458	7.10454013200569	7.32905914433096	7.24693525158008	7.11210724869668	0.00597904221446197	0.976299662649949	0.991528225629167
Merged-chr2-164680070-4	chr2	164679952	164680152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5055.0	NM_001012704	408190.0	Mm.376205	NM_001012704	ENSMUSG00000067704	Wfdc13	Wfdc13l1	WAP four-disulfide core domain 13	protein-coding	6.28286293969733	6.03406498148163	5.63732652110035	6.06628251126886	6.17720289616933	5.69701557491942	6.08494471111099	6.26192457519519	0.0789105543620613	0.76970727055876	0.909839341090846
Merged-chr13-45897810-4	chr13	45897709	45897909	+	978.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	67182.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	5.4657407333362	5.48268834468104	5.35371942161442	5.44715801934603	5.43448366004798	5.37264569980066	5.38444661489058	4.97562622580866	-0.229701745647866	0.428244429314397	0.719325810566156
Merged-chr6-17696526-3	chr6	17696430	17696630	+	780.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289624, intron 1 of 15)	intron (NM_001289624, intron 1 of 15)	2536.0	NM_001289625	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	3.53078157375524	3.25619228198678	3.32728540151467	3.28732734379467	3.32504174435778	3.25996298972118	3.13912136757062	3.14806129340911	-0.463747110327529	0.392127459381358	0.691774675781771
Merged-chr8-123202450-4	chr8	123202345	123202545	+	769.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007876)	TTS (NM_007876)	10343.0	NM_145606	234852.0	Mm.41596	NM_145606	ENSMUSG00000000743	Chmp1a	2900018H07Rik|Pcoln3	charged multivesicular body protein 1A	protein-coding	3.68542231593675	3.80133543863861	3.63203023685808	3.52005843037647	3.95131114182669	3.63285755144477	3.67118114361261	3.73551387136765	0.324065237363708	0.490552783528889	0.76225273216969
Merged-chr11-49210722-1	chr11	49210622	49210822	+	632.5	f0_balb.idr	intron (NM_001024846, intron 1 of 4)	intron (NM_001024846, intron 1 of 4)	7222.0	NM_009562	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	3.3889609474807	3.35350401781194	3.21956200703386	3.16766822261245	3.36085037760361	3.50252495775494	3.14752064069035	3.21798363595572	0.13080846210016	0.807415617030516	0.925742758728357
Merged-chr10-33986992-4	chr10	33986891	33987091	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015526)	TTS (NR_015526)	8064.0	NR_015526	414093.0	Mm.156915	NR_015526	ENSMUSG00000112280	A830082N09Rik	Gm17567	RIKEN cDNA A830082N09 gene	ncRNA	4.43177156916435	4.78413666907875	4.52159214487921	4.67307118423594	4.79635248133582	4.73755804064459	4.83644626082758	4.38284497256419	0.185874511477849	0.607071828315491	0.829771416202606
Merged-chr11-114750300-4	chr11	114750239	114750439	+	818.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001034878, exon 9 of 13)	exon (NM_001034878, exon 9 of 13)	-15050.0	NM_001102615	286942.0	Mm.308713	NM_001102615	ENSMUSG00000010021	Kif19a	Kif19	kinesin family member 19A	protein-coding	3.99328288900801	3.87595254282761	3.89643820413748	3.79034511769578	4.21937665237819	3.91115383174279	3.7209445482366	4.08182200614281	0.337629140267554	0.446040544589284	0.731807116064002
Merged-chr6-113644293-4	chr6	113644198	113644398	+	805.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 1 of 11)	MIRb|SINE|MIR	5831.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	3.8411105429109	3.76830119441521	3.32223475403135	3.35753143993224	3.91594751560606	3.86313269104378	3.7269929773766	3.88603092267182	0.805288591582334	0.102851905879995	0.35216269069915
Merged-chr16-45970369-3	chr16	45970280	45970480	+	854.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152226, exon 3 of 3)	non-coding (NR_152226, exon 3 of 3)	24774.0	NR_152227	100503378.0	Mm.387133	NR_152226	ENSMUSG00000085826	Gm15638	Gm41457	predicted gene 15638	ncRNA	3.66690369572133	3.9095005259531	3.31816012163453	3.40484222125385	3.70302035091127	3.56047976355978	3.65219522547742	3.61327661937917	0.138230147954821	0.786294853397048	0.916890465832706
Merged-chr7-31097796-4	chr7	31097686	31097886	+	969.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001276269)	TTS (NM_001276269)	13211.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	4.92456614097133	4.63752545906203	4.92537614396117	5.06369835686108	5.40917746357942	5.36942319491904	5.34090026637132	5.13070934876404	0.769308804104974	0.01457052348365	0.102735541460398
Merged-chr18-64618937-4	chr18	64618881	64619081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001488, intron 1 of 27)	intron (NM_001001488, intron 1 of 27)	42019.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	6.23186614085684	6.67025453031223	6.73279149744784	6.38652015421068	5.59565998023106	5.8059301792223	5.47064837642804	5.76135385836448	-1.3415639257884	2.16902830489034e-07	8.67355425358369e-06
Merged-chr6-5092931-4	chr6	5092823	5093023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 6 of 15)	intron (NM_181595, intron 6 of 15)	101023.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	6.72154379316157	6.40466774250644	6.4840308014396	5.86810219450111	6.47224644362059	6.36650164660457	6.45080984596121	6.42910817873335	0.0663149465895157	0.800187590128781	0.922971195556255
Merged-chr13-5804786-4	chr13	5804657	5804857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53335.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	7.31816338326694	7.37981753681974	7.23387483117649	7.16026916015358	7.48132358118022	7.24591508711057	7.49111842372059	7.3143298797673	0.165059510893203	0.363874641704754	0.668876429985607
Merged-chr7-132575841-4	chr7	132575734	132575934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016978, intron 1 of 9)	intron (NM_016978, intron 1 of 9)	564.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	8.05308270100299	8.27737121243259	7.89762494149098	8.13928749590088	8.31494704577377	8.29095407043875	8.40840159335573	8.2525358882358	0.27367419737327	0.0921448142253766	0.331998961472196
Merged-chr4-32571660-4	chr4	32571553	32571753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_026843)	promoter-TSS (NR_026843)	9.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	6.70673931887409	6.38850979889054	7.21116062709597	7.31933150390238	6.1424797308176	5.98570610441305	6.12497690913107	6.62893399450836	-1.0466964146064	0.000286111280398685	0.0048813793929765
Merged-chr6-97806914-4	chr6	97806797	97806997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113198)	promoter-TSS (NM_001113198)	-161.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	7.36300390352277	7.24437369362995	7.45067461052734	7.4503307342227	7.17380367870755	7.40493724376925	7.35702633399024	7.00570053489809	-0.189941865253377	0.3151867868351	0.627038475150038
Merged-chr1-171196295-3	chr1	171196210	171196410	+	828.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025557)	promoter-TSS (NM_025557)	-42.0	NM_025557	66425.0	Mm.482117	NM_025557	ENSMUSG00000038370	Pcp4l1	1500036F01Rik	Purkinje cell protein 4-like 1	protein-coding	3.26138542213617	3.39315367326031	3.3203369325199	3.39491906260341	3.39874219982869	3.24536118818091	3.30815111646191	3.47933037249679	0.0535290028675348	0.917471650964226	0.969617595046587
Merged-chr1-191098793-1	chr1	191098693	191098893	+	681.0	f0_c57.idr	intron (NM_030060, intron 1 of 2)	intron (NM_030060, intron 1 of 2)	379.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	4.06304837797201	4.41320052900689	4.25057737162864	4.31387559380132	4.20606339484613	3.9060391568451	3.94342244855655	4.44815303797677	-0.304710981474777	0.474807211972756	0.75189110620589
Merged-chr12-35036340-4	chr12	35036230	35036430	+	905.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-10859.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	4.43778537334826	4.24812285019472	4.55145728471976	4.17589721018018	4.2857500139346	4.14751302725807	4.29502250349736	4.22177038009057	-0.259319454295568	0.512135517331688	0.775701492755237
Merged-chr6-5174529-4	chr6	5174406	5174606	+	843.1416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011134, intron 7 of 8)	intron (NM_011134, intron 7 of 8)	19440.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	3.83972834161586	4.44335781366141	3.62524272534787	3.91217721830789	3.58812894885751	3.55521081727524	3.42639116916669	3.83798981387717	-1.13325642391773	0.0308777967397265	0.170561127901365
Merged-chr8-95132139-4	chr8	95132050	95132250	+	871.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145831, intron 3 of 21)	intron (NM_001145831, intron 3 of 21)	10390.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	4.17285340945809	4.34677384479633	4.43434638678889	4.66928671356019	4.21434761630644	4.29918088065761	4.10719743510083	4.07096652174706	-0.630908979285349	0.121022155011539	0.385251002873428
Merged-chr1-106796719-4	chr1	106796614	106796814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009190)	promoter-TSS (NM_009190)	11.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	8.56097298165253	8.66085072319492	8.29538469332329	8.29381694097136	8.74440108575427	8.83994788523054	8.66500606177273	8.42791634487841	0.274657335406246	0.11539251234138	0.375801776900946
Merged-chr4-155163450-3	chr4	155163354	155163554	+	862.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	59081.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	3.68680722158175	3.7147110045312	3.63517191389784	3.4270126715389	3.49791550919055	3.64067709117839	3.62051374311691	3.82972607641914	0.119566143164502	0.80485608484934	0.925078769566449
Merged-chr7-48998871-4	chr7	48998738	48998938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	39765.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	6.02588967692824	6.06632358775681	6.45503584696882	6.80169658475247	6.32006955937284	6.15899341682086	6.8367852371329	5.84976190307044	-0.0673213953511895	0.829045915013673	0.934333879868872
Merged-chr11-83834433-4	chr11	83834351	83834551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16418.0	NM_001291268	21410.0	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	7.36127962793019	7.63940446057804	7.17877771469517	7.19163594247753	7.41876869299896	7.71590549019099	7.09644552834592	7.39711471170556	0.0937224118741403	0.661851281675574	0.85960542472001
Merged-chr15-50869673-4	chr15	50869574	50869774	+	976.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	CpG	19375.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	4.75358524186841	4.78926165982423	5.04945656445145	4.70681443684685	4.56388716600373	4.73048157755459	4.73175233261328	4.31646280560997	-0.48951767819087	0.171568884584059	0.464921827228414
Merged-chr14-10430093-4	chr14	10430001	10430201	+	966.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	23357.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	4.7136569520577	4.97888476633669	5.12545370372275	5.16001301635379	5.21922194944008	4.97756233680796	5.30459820239451	5.18424115992513	0.304700679611771	0.337699839081862	0.64749984769571
Merged-chr9-108460151-4	chr9	108460049	108460249	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133744)	promoter-TSS (NM_133744)	-369.0	NM_133744	72454.0	Mm.46488	NM_133744	ENSMUSG00000049305	Ccdc71	2600016J21Rik	coiled-coil domain containing 71	protein-coding	5.68469205595223	6.02638673828274	5.36879748265393	5.0692926946482	6.18641344578389	6.17362999537054	5.5509492548316	5.39726279587321	0.48825311408713	0.167975838282408	0.459915036621355
Merged-chr5-96866561-3	chr5	96866478	96866678	+	855.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-54694.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	4.06596823719467	4.21269843983559	4.36886482109489	4.48339911922688	3.69488607126786	4.03431271181586	4.14210845382838	3.96302281567718	-0.900850324078546	0.0397190698154753	0.200878475941148
Merged-chr3-108258092-3	chr3	108257994	108258194	+	903.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011967, intron 1 of 8)	intron (NM_011967, intron 1 of 8)	1168.0	NM_011967	26442.0	Mm.208883	NM_011967	ENSMUSG00000068749	Psma5	ZETA	proteasome (prosome, macropain) subunit, alpha type 5	protein-coding	3.7187237449827	3.62892527842402	3.97905172426698	3.07538058183664	4.11142177857015	3.84327295462098	3.8640498184276	4.47578228403458	1.29253170577504	0.0171589666641311	0.115309487177699
Merged-chr7-110061550-4	chr7	110061425	110061625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009281)	promoter-TSS (NM_009281)	-177.0	NM_009281	20841.0	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	8.9605547897339	9.06690648769073	8.64591694231013	8.86647199422147	9.11719052583416	9.28715397749024	8.94352182800233	8.83062882114927	0.2006511675693	0.243104595391206	0.554063014163832
Merged-chr5-34336300-4	chr5	34336199	34336399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011278)	promoter-TSS (NM_011278)	49.0	NM_011278	19822.0	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	7.93682931257393	8.34250285082799	7.93101272776562	7.71718892362899	8.1474072313217	8.25686853623545	7.87851363533222	7.77375373930702	0.0399879505866176	0.846194055830859	0.941893235022515
Merged-chr2-145720937-4	chr2	145720837	145721037	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 2 of 3)	intron (NR_033220, intron 2 of 3)	19742.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	5.10467634203606	5.14860910460794	4.71156985064055	4.34884990900142	4.89520697178887	5.00754970380136	5.30322486773929	4.82829990643028	0.322742117845307	0.397350417739255	0.69576798253969
Merged-chr4-132334959-4	chr4	132334860	132335060	+	946.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133878, intron 6 of 9)	intron (NM_133878, intron 6 of 9)	-5422.0	NM_027925	71787.0	Mm.239183	NM_027925	ENSMUSG00000028898	Trnau1ap	1110007F05Rik|AA387999|Secp43|Trspap1|WI1-2643G14.2	tRNA selenocysteine 1 associated protein 1	protein-coding	5.14447556202318	5.06947773325841	4.84226307970153	4.08173057579507	6.55103119801716	6.70632966595136	6.61082496456745	5.89585829024043	2.77700527496197	3.07687620075395e-15	5.17751704712684e-13
Merged-chr3-89688911-2	chr3	89688811	89689011	+	665.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26111.0	NM_001038587	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	2.99450672519489	2.72625306206929	2.67661079881354	2.63819185362559	2.95462646824622	2.92137034514084	2.86629550782061	3.04837313981719	0.866021692385822	0.160077719690734	0.44793694263737
Merged-chr12-8771447-8	chr12	8771412	8771612	+	745.739563	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011519, exon 1 of 5)	5' UTR (NM_011519, exon 1 of 5)	116.0	NM_011519	20969.0	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	3.07121236522272	3.12081358204914	3.24252636187569	2.91711058831281	3.27775546943116	3.05185373281481	2.9992436379157	3.1294969207854	0.163261971455103	0.776535843273315	0.912932991254018
Merged-chr10-84330046-3	chr10	84329938	84330138	+	914.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110433.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	4.37884585094955	4.15247453258864	4.52493207563532	4.40967173605639	3.86163666250502	3.92749766301178	4.15167461610971	3.67804291336778	-1.20768623787664	0.00586296750893527	0.0533725750503266
Merged-chr7-118114734-3	chr7	118114628	118114828	+	635.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170669, intron 3 of 4)	intron (NM_170669, intron 3 of 4)	1419.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	3.5718826962508	3.65408149127749	3.40181186052455	3.37573939667744	3.44076934852319	3.63430302786333	3.75252821440304	3.51605069849612	0.284468703103506	0.565423357844052	0.807541819254018
Merged-chr16-62854333-4	chr16	62854242	62854442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011173)	promoter-TSS (NM_011173)	35.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	6.54523714511218	6.15853412575046	6.43074457484634	6.4335957667007	6.34216282803462	6.60658486998418	6.66087908670064	6.35499639092423	0.138965093830371	0.539661453632058	0.792391982250617
Merged-chr14-67760701-1	chr14	67760601	67760801	+	563.5	f0_c57.idr	intron (NM_177780, intron 48 of 51)	intron (NM_177780, intron 48 of 51)	15520.0	NR_133010	14714.0	Mm.358309	NM_008145	ENSMUSG00000015812	Gnrh1	Gnrh|Gnrh2|LHRH|Lhrh1|Lnrh|hpg	gonadotropin releasing hormone 1	protein-coding	3.10489515908839	2.94438408823701	3.10528760105194	2.65180269488766	3.34422319622549	3.2191311429877	3.32113248150724	3.48251857273132	1.58408577991148	0.00774051536600468	0.0656129928804598
Merged-chr9-78110325-4	chr9	78110234	78110434	+	962.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163780, intron 1 of 13)	intron (NM_001163780, intron 1 of 13)	1142.0	NM_001163780	56542.0	Mm.288719	NM_019987	ENSMUSG00000009828	Ick	2210420N10Rik|AI848300|Mrk	intestinal cell kinase	protein-coding	4.42106890694478	5.11008098486353	4.89095683966851	4.74137054511606	4.96594563909858	5.09885826462924	4.93651835142176	4.95725716083036	0.348947268197277	0.310065837261542	0.622199763486801
Merged-chr15-81948732-4	chr15	81948643	81948843	+	780.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145473, intron 3 of 3)	intron (NM_145473, intron 3 of 3)	11984.0	NM_145473	105859.0	Mm.22524	NM_145473	ENSMUSG00000042109	Csdc2	AI415250|AI481750|Pippin	cold shock domain containing C2, RNA binding	protein-coding	3.34283355522016	3.67839028277303	3.69100919618174	3.51071941531683	3.84320094670151	3.52246358470072	3.67573532691949	3.83272619661312	0.523705026966994	0.279849267678324	0.591922947345638
Merged-chr13-113602081-4	chr13	113601987	113602187	+	764.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	ORR1B2|LTR|ERVL-MaLR	16477.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	3.42598052696129	4.01436471938388	3.76033854507061	3.50208782633253	3.81560559778779	3.66417049189439	3.47578823615994	3.65618716787704	-0.0914361809563077	0.857617971225216	0.946380626852079
Merged-chr4-45532499-4	chr4	45532409	45532609	+	870.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1681.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	4.4515323814253	4.00091272595879	4.12437346337494	4.15946657651999	4.17354087362431	4.24937621386976	4.0104906886657	3.92006872126742	-0.239254020682128	0.570023958529314	0.809758019881013
Merged-chr10-24928192-4	chr10	24928129	24928329	+	972.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007482)	promoter-TSS (NM_007482)	-759.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	4.38630247860524	4.34004222076804	5.15738701000388	4.7689704565827	4.49084795062737	5.08702312230734	4.82356443375409	4.87852986615716	0.257104637331564	0.523200608525735	0.782449675195448
Merged-chr10-125735946-4	chr10	125735842	125736042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-230277.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	6.042187081001	5.45710559343542	5.77640150150973	6.19305752497617	5.51918766129599	5.68051676119001	6.19692778878579	5.86758467417992	-0.114656427674783	0.70852774538811	0.882900028609472
Merged-chr8-83572631-3	chr8	83572511	83572711	+	827.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025843)	TTS (NM_025843)	5853.0	NM_025843	66916.0	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	4.13709584566453	3.91253834772636	3.61200171864124	3.94238425481698	3.22507937657789	3.49207508724328	3.22923553605079	3.2376928046132	-2.14805191385461	0.000109497288887623	0.00218929986677869
Merged-chr19-60790735-4	chr19	60790656	60790856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010123)	promoter-TSS (NM_010123)	-63.0	NM_010123	13669.0	Mm.2238	NM_010123	ENSMUSG00000024991	Eif3a	A830012B05Rik|Csma|Eif3|Eif3s10|mKIAA0139	eukaryotic translation initiation factor 3, subunit A	protein-coding	7.82401574604858	7.95690247891829	7.64423748036659	7.54687246269895	7.66320876765849	7.79593285530165	7.62356745300816	7.10942873158032	-0.229861591304797	0.274394829282767	0.586168954187216
Merged-chr8-84704538-3	chr8	84704421	84704621	+	751.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081981)	TTS (NM_001081981)	3064.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	2.8653426081892	2.89618650317102	2.86574756140765	2.83337493583477	2.4342920126501	2.50054452373991	2.54248162033331	2.61796329490568	-1.90214142480224	0.00806001250466097	0.0675660852749102
Merged-chr5-147471431-4	chr5	147471320	147471520	+	982.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 4 of 18)	intron (NM_028291, intron 4 of 18)	41264.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	5.06320080403638	4.80527277937827	5.03161060834402	5.05741772908952	4.93309063463205	4.95391162072333	4.67372897329378	5.18243694281772	-0.095577245904788	0.770252007839973	0.910083821330452
Merged-chr1-180261982-4	chr1	180261862	180262062	+	901.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5662.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	4.34064313824437	4.15851334993255	4.60708589908799	4.08710567632541	4.2258653004768	3.95347754898969	4.32148708686555	4.45925024534037	-0.116784010335329	0.781961000879842	0.915191510295251
Merged-chr1-46873980-4	chr1	46873880	46874080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356417, intron 2 of 10)	intron (NM_001356417, intron 2 of 10)	-20362.0	NM_172653	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	6.15431411094054	6.28951761923356	6.60271079483055	6.85348225280695	6.24944382202376	6.15107188806456	6.82527207365306	6.27357399780771	-0.168456920879266	0.542837436576406	0.793987873953476
Merged-chr13-5862354-8	chr13	5862245	5862445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011803, intron 1 of 3)	intron (NM_011803, intron 1 of 3)	856.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	5.26383786159812	5.40008519829749	5.23437051388449	4.6372443997245	4.93493934574319	5.72878689750297	4.97457054220182	5.23070999585097	0.177003885369756	0.635977652866314	0.845986164419408
Merged-chr10-41477892-4	chr10	41477786	41477986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358838)	promoter-TSS (NM_001358838)	-124.0	NM_001358838	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	6.27603147948827	6.27336989913192	6.18170422690019	6.27508301249419	6.2090090679758	6.296603345054	6.00393753860946	6.1370220924254	-0.134132937107802	0.550560155137507	0.798665130029057
Merged-chr2-30196885-4	chr2	30196829	30197029	+	720.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356475, intron 1 of 13)	intron (NM_001356475, intron 1 of 13)	8918.0	NM_001356475	70266.0	Mm.216089	NM_172404	ENSMUSG00000039648	Kyat1	2010009K05Rik|AI182306|Ccbl1|Gtk|Kat1|KatI	kynurenine aminotransferase 1	protein-coding	3.47975082026879	3.65715132926828	3.36333529841155	3.24292479609201	3.34171716468802	3.53870900024944	3.67015043075292	3.63573304716071	0.369221210275456	0.473103187232195	0.751053562324356
Merged-chr10-34244895-4	chr10	34244809	34245009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37281.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	7.03078099137234	7.10015501514203	7.57884526789074	7.37738891704669	6.88692300166589	6.93233383514269	7.18102041631398	6.77988046960625	-0.467011362554176	0.0303512996623894	0.168555446568559
Merged-chr2-131086842-4	chr2	131086737	131086937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011426)	promoter-TSS (NM_011426)	-72.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	5.79895212767981	5.75131705811212	5.84665682060117	5.80938159055241	5.54060898238545	5.77043722044679	6.02606953706245	5.6970474268529	-0.064858401416478	0.803214490414954	0.924024146497742
Merged-chr15-103515241-4	chr15	103515148	103515348	+	967.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001285890, exon 1 of 15)	5' UTR (NM_001285890, exon 1 of 15)	271.0	NM_001285890	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	4.45954478206939	4.74203446208871	4.7187782959448	4.82565810363021	4.87945922653524	4.72915370864943	5.11969393866207	4.75413295685094	0.361535900740698	0.295267429076844	0.607360011623083
Merged-chr1-12992435-5	chr1	12992388	12992588	+	959.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1353.0	NM_172841	240726.0	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding	4.51946746248301	4.3293485223974	4.72201263727599	4.47692735962964	4.94146310815001	5.06635750470567	4.1560655808359	4.95621920059479	0.659411278961762	0.0998986234510732	0.346710425599685
Merged-chr5-65198542-3	chr5	65198440	65198640	+	849.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	-1156.0	NM_001359880	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	3.69632050835102	4.01994211506053	3.79869771216037	3.65295727523756	3.58493740955299	3.6437823335336	3.51467089592117	3.84439055373762	-0.44201515075518	0.357601300502728	0.66373837566778
Merged-chr7-30181513-4	chr7	30181407	30181607	+	825.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2664.0	NM_009944	12865.0	Mm.423030	NM_009944	ENSMUSG00000074218	Cox7a1	COX7A|COX7AH|COX7AM	cytochrome c oxidase subunit VIIa 1	protein-coding	3.88941430408756	3.97150099291997	3.83293610203382	3.57307133528537	4.4309985085603	4.40374929088349	4.40923630648216	4.2296416588724	1.48350182635789	0.000352646730579388	0.00578498309193599
Merged-chr7-114461819-6	chr7	114461718	114461918	+	980.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 1 of 15)	intron (NM_011055, intron 1 of 15)	46564.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	4.42240965002548	4.37382149604061	4.81004429299894	4.63956303559825	4.91089851445227	5.02040243604276	4.9590393749624	5.3186172458235	0.977889094303328	0.0050219708353046	0.0477057069379616
Merged-chr6-84043638-4	chr6	84043528	84043728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 3 of 54)	intron (NM_001077694, intron 3 of 54)	24242.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	6.84337468245132	6.95478611996	7.26256282486944	7.22941588111311	7.0628897649107	6.94914880778852	6.80987535564181	6.9739422687435	-0.18780785565567	0.35875757311211	0.664705867104326
Merged-chr11-35834562-4	chr11	35834476	35834676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025936)	promoter-TSS (NM_025936)	-48.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	7.59446139509428	7.70107201964438	7.638818112343	7.62628070405975	7.58282361169009	7.7900826537463	7.57583733037574	7.48090894159635	-0.0407395968988473	0.810522050148138	0.926833751678515
Merged-chr2-27401729-3	chr2	27401623	27401823	+	680.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	ORR1A2-int|LTR|ERVL-MaLR	25885.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	3.55613444524932	3.70021714538157	3.13741889767838	3.24082706180716	3.57509654889005	3.44735538065874	3.49021041387947	3.4480041954665	0.23415017072218	0.662060713941112	0.859785067644853
Merged-chr15-76925655-4	chr15	76925503	76925703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172817)	promoter-TSS (NM_172817)	-155.0	NM_001168276	239546.0	Mm.183650	NM_172817	ENSMUSG00000054967	Zfp647	6030449J21|Es492|Znf250	zinc finger protein 647	protein-coding	5.77563045473919	6.09055548425179	5.7521662674188	5.63579437764157	5.65845171702508	5.7984701004186	5.79459309247976	5.74809219881622	-0.115245156562881	0.661172622960747	0.859233242450522
Merged-chr4-8648551-4	chr4	8648379	8648579	+	758.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41927.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	3.69314865866678	3.45605962881164	3.43004663074634	3.15834224450117	3.63620422169072	3.42202889994441	3.47359106924824	3.73811575664002	0.464312385536303	0.374633036959504	0.677891254741963
Merged-chr5-135134317-3	chr5	135134224	135134424	+	710.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152882, intron 14 of 16)	ZP3AR|Satellite|Satellite	-15387.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	3.46480195533075	3.34770656723784	3.67635151148908	3.86794196882274	3.53285710444676	3.52011430507904	3.45246528161068	3.51948133683139	-0.362461554327051	0.482800135727917	0.757421686487144
Merged-chr15-31601780-4	chr15	31601673	31601873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007637)	promoter-TSS (NM_007637)	73.0	NM_007637	12465.0	Mm.282158	NM_007637	ENSMUSG00000022234	Cct5	CCT-epsilon|Ccte|TCP-1-epsilon|TCPE|mKIAA0098	chaperonin containing Tcp1, subunit 5 (epsilon)	protein-coding	7.98321772909407	8.22199652017565	7.72721596959455	7.95537358576573	8.08336615031223	8.18914710852979	7.80175937673294	7.93747372012325	0.0336825076097996	0.855055171798915	0.945424485789793
Merged-chr17-70968983-7	chr17	70968873	70969073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21543.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	5.31587436917079	5.51814600168619	4.64297974259268	4.94426577135256	5.545469727661	5.00703513561736	5.26085565205342	5.55120710258757	0.401196488027463	0.260131315192626	0.571901621080305
Merged-chr2-45117305-4	chr2	45117218	45117418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355288, exon 1 of 11)	5' UTR (NM_001355288, exon 1 of 11)	124.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	5.91745790246261	6.24148914768073	6.11005858339662	5.14583753782864	5.9464509827657	6.20384266680256	6.13613972272156	5.98134250862393	0.256219970248256	0.421565464805392	0.714001052191097
Merged-chr15-101259333-4	chr15	101259221	101259421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-7525.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	6.63780413854939	6.65101360228516	6.75390659507806	5.82648366718654	6.71203433082039	6.23720072695025	6.69177867912622	6.76272862301739	0.170431486344499	0.547359858668176	0.796783882293747
Merged-chr1-165154368-3	chr1	165154301	165154501	+	557.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032005, intron 1 of 7)	intron (NM_032005, intron 1 of 7)	6372.0	NM_032005	83993.0	Mm.190649	NM_032005	ENSMUSG00000026572	Tbx19	AU019250|D1Ertd754e|Tpit	T-box 19	protein-coding	3.45005796218989	3.22760825800184	3.34051412361295	3.47358363106798	3.41769054591297	3.33098743002251	3.3836331783356	3.39487803425327	0.00512943301443868	0.992031668170485	0.996968078938269
Merged-chr3-108997939-4	chr3	108997831	108998031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163567, intron 2 of 10)	intron (NM_001163567, intron 2 of 10)	29676.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	5.31004071979521	5.47437965876138	5.46238981363035	5.34387506255427	5.81965802203529	5.69249602189279	5.64486604670031	5.56851020933345	0.509198669003849	0.0549239426785951	0.244826557164398
Merged-chr5-122109983-4	chr5	122109869	122110069	+	906.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183307, intron 11 of 12)	intron (NM_183307, intron 11 of 12)	9018.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	5.20667298768634	4.9936709867425	5.46976169395532	5.0072323321311	4.70156971228408	4.66539021603023	5.02757815278599	4.94583242876051	-0.651674129261958	0.0544365422093782	0.243534247246073
Merged-chr14-25466465-3	chr14	25466327	25466527	+	841.1555789999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	7242.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	3.95773299055493	3.7127152751148	3.87073893999106	3.90059779623177	3.56500552745047	3.62122470194157	3.43189068494536	3.4419163100699	-1.09116358849308	0.0244332078646175	0.146118184941642
Merged-chr1-131198493-4	chr1	131198388	131198588	+	912.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018750, intron 2 of 5)	intron (NM_018750, intron 2 of 5)	1697.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	4.57396691154411	4.30550412490739	4.65076113849652	4.93737958645248	4.53381983052474	4.39400079717737	4.38790333368349	4.40466928725394	-0.488751390982434	0.208003435859052	0.512131970751303
Merged-chr16-33782134-4	chr16	33782037	33782237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11900.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	6.26111807274909	6.2629723918889	6.0381295385853	6.53934168497992	6.03111539061112	6.07508263235529	6.21147459989639	6.31247826381552	-0.22477623970176	0.356597094221458	0.66299823867906
Merged-chr8-46941504-4	chr8	46941409	46941609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45378.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	7.48673789945219	7.8448185431872	7.5724017472584	7.87283061002714	7.5904627044447	7.82880281276382	7.78806313414498	7.68808167273008	0.00979102502096494	0.957423764487345	0.984818655362718
Merged-chr5-151322128-4	chr5	151322023	151322223	+	965.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-46552.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	4.75887592381037	4.63001354580314	5.06752531706361	4.72579008412019	5.613516280374	4.80901226545061	5.7703463032664	5.42022117935574	1.2261323993712	0.000482200759234014	0.00750516041145954
Merged-chr4-155216863-4	chr4	155216753	155216953	+	791.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	5682.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	3.63341442737078	3.95202474881207	3.95292312164533	3.75075796768595	3.92449091068263	3.75238149129095	3.78777586573066	4.24288050647025	0.327929631173405	0.474963327494592	0.75199957250939
Merged-chr3-108204156-4	chr3	108204035	108204235	+	731.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175183, intron 10 of 11)	intron (NM_175183, intron 10 of 11)	-3301.0	NM_001081320	72023.0	Mm.246391	NM_028061	ENSMUSG00000048796	Cyb561d1	1600010M23Rik|AI605489|AW457162	cytochrome b-561 domain containing 1	protein-coding	3.32472714729192	3.56048310611756	3.38767828274903	3.29718478172675	3.54593133343789	3.83066537230821	3.54494918377056	3.70869046634416	0.871915730887001	0.0768175694175445	0.29957252758993
Merged-chr3-136750153-3	chr3	136750047	136750247	+	738.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	80081.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	3.99672799102848	4.06576830600821	3.84842661554505	4.08496136529482	3.691251616411	4.07160225144575	3.98004234680279	3.79266630451412	-0.347098002032502	0.433066838265474	0.722758873865112
Merged-chr5-8357438-4	chr5	8357334	8357534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	10726.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	8.55314933394692	8.02133349149663	8.78092278161569	8.76341232339012	8.24432514141214	8.3454242171023	8.53826276780371	8.58591792043573	-0.166332703947177	0.418782010590282	0.712065470636991
Merged-chr18-3507330-2	chr18	3507228	3507428	+	991.5	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_026505)	promoter-TSS (NM_026505)	-629.0	NM_026505	68010.0	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	4.98824747484158	4.82222276506304	5.38443749122717	4.46875296439587	4.70760563506331	4.78431724573745	4.86167805072721	5.01842491666533	-0.195915866088128	0.60679082025472	0.829617829632128
Merged-chr18-5042685-1	chr18	5042585	5042785	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-3904.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	3.4530967550553	3.40705997842331	3.60014720927034	3.80556620043133	2.91465634721135	2.90615284227739	3.08871214465085	3.28625212037439	-2.10644051412121	0.0007222259119898	0.0103875584664665
Merged-chr15-34456352-4	chr15	34456262	34456462	+	893.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173421, intron 1 of 2)	MTD|LTR|ERVL-MaLR	3050.0	NM_173421	239368.0	Mm.211977	NM_173421	ENSMUSG00000044726	Erich5	-	glutamate rich 5	protein-coding	4.32390214795938	3.7925378823639	4.2371351777625	4.61971307971643	4.00874904702706	4.16717207243667	4.3459569796969	4.44245230386625	-0.103130650896488	0.820877142162128	0.931443689364036
Merged-chr3-127498982-6	chr3	127498924	127499124	+	939.194458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001327938)	promoter-TSS (NM_001327938)	91.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	4.22009715478115	4.1384336026444	3.93222809936368	3.73660175097393	4.7967926488497	5.10082828182658	4.67464530139259	5.12192456336029	2.13641822127015	4.2306072604968e-08	1.970748653108e-06
Merged-chr7-144581758-4	chr7	144581771	144581971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010175, intron 1 of 1)	intron (NM_010175, intron 1 of 1)	565.0	NM_010175	14082.0	Mm.5126	NM_010175	ENSMUSG00000031077	Fadd	Mort1/FADD	Fas (TNFRSF6)-associated via death domain	protein-coding	6.30539657813579	6.23619156386838	6.73465776276647	6.30572507716838	6.24082509922046	6.60794325018131	6.17654004511665	6.55747650401859	-0.00126730980555464	0.995873820603804	0.998543856884531
Merged-chr13-44532898-4	chr13	44532812	44533012	+	930.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93185.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	5.29585845008017	5.07500811958305	5.12144114759329	5.29380430824042	4.56982439374776	5.16340558101267	4.85720386968864	4.71625551116933	-0.732369191153358	0.0283933337148908	0.161538574094174
Merged-chr7-100700015-4	chr7	100699919	100700119	+	772.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6616.0	NM_001362169	319604.0	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	3.94463364585425	3.74158552452822	3.42461819470414	3.90635139908554	3.75811411987664	3.67837511994164	3.92784419119395	4.50921480343262	0.650932145057201	0.211984696939429	0.51679483314901
Merged-chr4-147936702-4	chr4	147936601	147936801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011122)	promoter-TSS (NM_011122)	75.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	6.02578054890055	6.38833405244785	6.56316576501539	6.29084347844484	6.26805859977101	6.27136609520043	6.24485921312545	6.43199038624099	-0.036945777365744	0.873712579259228	0.95270903502141
Merged-chr4-45342063-4	chr4	45341906	45342106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153167)	promoter-TSS (NM_153167)	-95.0	NM_153167	242418.0	Mm.317668	NM_153167	ENSMUSG00000035572	Dcaf10	AA959934|Wdr32	DDB1 and CUL4 associated factor 10	protein-coding	7.13482019313164	7.07107264539072	6.86534420964156	7.11345559102914	6.65438988573484	6.75122286300775	7.07794362963345	6.8466740867454	-0.303377680301225	0.13813126363039	0.413493364199996
Merged-chr11-98795143-4	chr11	98795023	98795223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361932)	promoter-TSS (NM_001361932)	-393.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	5.41059452647171	5.73555436770687	5.41152602189115	5.28856335682763	5.72644690772318	5.90370546227022	5.22502573217145	5.77281973814525	0.365041911131723	0.221665008803687	0.529761731915444
Merged-chr1-144265828-4	chr1	144265725	144265925	+	750.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16721.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	3.92045748942644	3.72031201746757	3.43037447624664	3.82442376681955	3.82863700223324	3.94720880570162	3.85806818196387	3.55450885986833	0.186636165292665	0.698053959628981	0.878150009573393
Merged-chr11-16986783-5	chr11	16986755	16986955	+	938.042847	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 6 of 9)	intron (NM_019549, intron 6 of 9)	21863.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	3.2768959092279	3.36663471830873	3.44955137060527	3.04443755464981	3.57521011340247	3.61909631802498	3.32472296697603	3.33551819871294	0.672466776727045	0.208333726118662	0.512599339465596
Merged-chr11-80043589-4	chr11	80043466	80043666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1M8|LINE|L1	37425.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	7.39669305839102	7.8879012533156	7.07299840937141	6.68804221705836	7.63448353242295	7.77539849579609	7.27983959292852	7.43168462165051	0.278948008099207	0.306848999192433	0.619222185119024
Merged-chr5-4186992-4	chr5	4186883	4187083	+	758.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5384.0	NM_001042670	208595.0	Mm.129815	NM_001042670	ENSMUSG00000053178	Mterf1b	Gm9897	mitochondrial transcription termination factor 1b	protein-coding	3.69571349291549	3.60441892655911	3.58458069858881	3.46085372233147	3.67093869553091	4.0166389487684	3.92133698411737	3.79679863120512	0.823344568220108	0.074813902468548	0.295023754227633
Merged-chr17-15577530-4	chr17	15577424	15577624	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14201.0	NM_144809	213389.0	Mm.215162	NM_144809	ENSMUSG00000051977	Prdm9	BC012016|Dsbc1|G1-419-29|Meisetz|PRDM9-B|Rcr1|repro7	PR domain containing 9	protein-coding	5.26020019851852	5.47333069659678	5.06875501689383	5.65393838837675	5.10787793632308	4.80352828125538	5.11101911422884	4.87981089554792	-0.766766583072275	0.0191423511858746	0.124262053356987
Merged-chr7-49250252-4	chr7	49250206	49250406	+	991.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	4117.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	4.59248670030784	4.68067529807205	4.93607541362717	4.49667212788533	4.40065682207645	4.50955809492813	4.64748300912962	4.17643476121677	-0.522697437448364	0.170817210743268	0.464004933466155
Merged-chr4-130914846-4	chr4	130914723	130914923	+	934.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	MIR3|SINE|MIR	1489.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	3.5959163930792	4.10109302222105	4.60843768881262	4.2152917651852	4.24654582261406	3.91127160340548	3.88869723957108	4.32221564375695	-0.172163057953733	0.729843363717519	0.892804127302382
Merged-chr18-20741047-4	chr18	20740952	20741152	+	969.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	5352.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	5.20846294609644	4.96908754469276	5.47758036627086	5.56435507068816	4.68427352353627	4.74662037380083	4.9203889212234	4.94080348101041	-0.994507138672764	0.00308030875473802	0.032641161287768
Merged-chr4-155490562-4	chr4	155490466	155490666	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160017)	promoter-TSS (NM_001160017)	-795.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	5.39968687728034	5.43983754711224	5.09535540755973	5.06447261912659	5.2381202175096	5.36885546900761	5.20064302014546	4.98414329425139	-0.0847044487471454	0.784017900204097	0.91592716187348
Merged-chr16-93192921-4	chr16	93192812	93193012	+	920.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	160277.0	NR_040486	69857.0	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	4.79411713515964	4.4406390425878	4.83137327332589	5.38498847708422	4.64088280218229	4.89305324997385	4.53084909895901	4.71560070666968	-0.475168802452928	0.232384011104065	0.54195018270621
Merged-chr14-72595491-3	chr14	72595392	72595592	+	870.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 4 of 25)	intron (NM_207636, intron 4 of 25)	114511.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	3.91254740681914	3.99642127307013	4.25484013358245	3.7938767164732	3.71721352984836	3.93208666480679	3.8470378854251	3.63956410742256	-0.587627714188451	0.203357444191144	0.506170662223812
Merged-chr10-8953160-3	chr10	8953063	8953263	+	972.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67093.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.15966592417857	3.46127323287925	3.64469646377269	3.89531525577863	3.77647913981887	3.47606934681908	3.62967915595034	3.53731337559835	0.100886511646954	0.856138526786456	0.945844091213898
Merged-chr11-73109291-3	chr11	73109190	73109390	+	726.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 2 of 30)	intron (NM_001361245, intron 2 of 30)	18695.0	NM_172944	16407.0	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	3.14268776276044	2.97274926431227	3.09077633015103	3.07939439735503	2.71885840356371	2.75308998158037	2.64201376583935	2.85510097685918	-1.56695137003355	0.0158401508020144	0.108999042337257
Merged-chr10-79793590-4	chr10	79793498	79793698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161747)	promoter-TSS (NM_001161747)	26.0	NM_001161747	18483.0	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	5.37903166862672	5.02527030730715	4.84927570109685	5.32654822151181	5.2767007061945	5.06790105126719	5.32576675148198	5.20227533961083	0.0942435272996166	0.764749552318329	0.907812114625849
Merged-chr2-14494358-4	chr2	14494225	14494425	+	896.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012305, intron 12 of 12)	intron (NM_001012305, intron 12 of 12)	105927.0	NM_001012305	277468.0	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	5.11524367167184	4.63907436730668	5.14518066209738	5.36127023314139	4.40734635564072	4.46159670295197	4.9354185649081	4.52594053410447	-1.03690137769595	0.00646970943521033	0.0573851424518157
Merged-chr15-90645091-4	chr15	90644969	90645169	+	940.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033851, intron 3 of 3)	intron (NM_001033851, intron 3 of 3)	34319.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	5.92214575438886	5.4730115918202	6.28705412433979	6.37020795389592	4.86472841182284	4.99703047409713	4.91732555572392	5.06037609634126	-1.95555371644703	3.30273566332407e-09	1.92692968671921e-07
Merged-chr12-26469915-2	chr12	26469850	26470050	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_020557, exon 1 of 5)	exon (NM_020557, exon 1 of 5)	735.0	NM_020557	22169.0	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	3.72292704429668	3.77022364004628	3.60844967729194	3.73537280877001	3.97083018812173	4.04861860328615	3.9098053909272	3.92445579625029	0.713620293938542	0.101602681278206	0.349810256878274
Merged-chr18-60381408-4	chr18	60381303	60381503	+	999.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021792, intron 2 of 2)	MTC|LTR|ERVL-MaLR	5374.0	NM_001146275	60440.0	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	4.99685267020055	4.67944057584618	4.7440911041913	5.09673682984873	4.9851542466078	4.91916198899932	4.87176136232398	4.89186476248933	0.0281936274334044	0.932469917299873	0.975664181402534
Merged-chr11-34047130-4	chr11	34047037	34047237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010696, exon 1 of 21)	5' UTR (NM_010696, exon 1 of 21)	209.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	7.01745988545323	7.40286235696645	7.0062500715314	6.55890109795128	7.28216131159159	6.93626425270797	7.03158124087967	6.910674950292	0.0449174879108211	0.853278936394252	0.94475619353223
Merged-chr9-104339188-3	chr9	104339075	104339275	+	823.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1453.0	NM_207668	56318.0	Mm.19941	NM_019807	ENSMUSG00000032561	Acpp	5'-NT|A030005E02Rik|FRAP|Lap|PAP|Ppal	acid phosphatase, prostate	protein-coding	4.2113930142545	4.03732272511996	4.45070228390288	4.32529242300143	3.73407137612857	3.98459111424394	4.05601486197803	4.25239282488715	-0.660390298565965	0.129648407509925	0.400757545409692
Merged-chr9-15709546-4	chr9	15709435	15709635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357565)	promoter-TSS (NM_001357565)	-203.0	NM_001357566	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	6.71459618636905	6.89158543118081	7.68911869456881	7.23799745326013	6.69964911430425	6.7792563373127	6.85756757639448	7.39956271726319	-0.309998027561074	0.261821805887216	0.573739742665051
Merged-chr6-90713321-4	chr6	90713232	90713432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	3197.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	8.12813884927892	7.99252351100972	8.3607881153774	8.64024836282438	8.18142407789209	8.18021330773411	8.25685162686171	8.24505935112849	-0.124570280521816	0.512075146415946	0.775675608570773
Merged-chr7-97164454-4	chr7	97164359	97164559	+	982.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	82708.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	5.39516750586099	4.83683434697982	5.06334764391596	5.61602823897729	5.05404050135171	4.97541561094769	5.13775981681222	5.19113688039719	-0.352459898309845	0.302071160922871	0.614370464992115
Merged-chr9-99140327-4	chr9	99140224	99140424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029094)	promoter-TSS (NM_029094)	-113.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	7.60509377817795	7.68612860781596	7.64139982037289	7.57709865694454	7.81242561274937	8.13036279132438	8.04217666749628	7.40978842372748	0.325364068727885	0.104069430606118	0.354556376271467
Merged-chr1-120607076-2	chr1	120606976	120607176	+	862.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_010133, exon 2 of 2)	exon (NM_010133, exon 2 of 2)	4589.0	NM_010133	13798.0	Mm.2657	NM_010133	ENSMUSG00000058665	En1	En-1|Mo-en.1|engrailed-1	engrailed 1	protein-coding	2.56836734628329	2.47745688755978	2.74875121601242	2.06907685193231	2.4210055265684	2.46719084697563	2.27767996534155	2.74700252311537	-0.0233042813715982	0.977104026828132	0.991846772373464
Merged-chr6-70805490-4	chr6	70805395	70805595	+	768.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13320.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	3.60787884494374	3.75533900157527	3.48768272546087	3.62742192366778	3.87135800039289	3.98999869780848	3.80458689157006	3.86653512269681	0.761178973940051	0.0925505727646307	0.332777188260944
Merged-chr3-79177778-1	chr3	79177678	79177878	+	617.0	f0_c57.idr	Intergenic	L1M3|LINE|L1	-31903.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	3.45704680645141	3.61561335125407	3.80996590030095	3.81004332702122	3.50609875925019	4.08018899729088	3.98322061076873	4.20323420808588	0.782472903192628	0.118812128052406	0.3813389862111
Merged-chr8-122559235-4	chr8	122559141	122559341	+	989.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7912.0	NM_001357349	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	5.2006753513832	5.01717088589801	4.93823273386362	5.40578106781792	4.84632075077396	5.07655564607313	4.98521415009821	4.93494686661291	-0.413561789888955	0.201851326315179	0.50430240631057
Merged-chr11-70475350-4	chr11	70475254	70475454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-15370.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	6.10885972587634	6.34324904471291	6.13062304171355	5.9438566162912	6.1453444331083	6.4413918249955	6.09927771314922	6.20568143500005	0.145099951175983	0.546139945935779	0.796216848857359
Merged-chr1-85977876-4	chr1	85977775	85977975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16820.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	5.36038915610199	5.54638194372591	5.17875066985588	4.07476827956336	5.33889359336651	5.7894543099593	5.44171706873908	4.79946408271362	0.38711845499843	0.542631675815576	0.793917205662524
Merged-chr18-24205880-4	chr18	24205777	24205977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160404)	promoter-TSS (NM_001160404)	-82.0	NM_001361200	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	6.1636240683902	5.8897668223937	5.77159713273832	6.03477374052432	6.02411021625569	5.7577144839865	6.25719621850402	5.74166542958414	-0.0133006999056257	0.959610476258334	0.985551429297447
Merged-chr1-121508944-4	chr1	121508841	121509041	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010483)	TTS (NM_010483)	19524.0	NM_010483	15564.0	Mm.4833	NM_010483	ENSMUSG00000050534	Htr5b	5-Ht5b	5-hydroxytryptamine (serotonin) receptor 5B	protein-coding	4.90869542734969	5.66893810073352	5.14694897318511	5.51588409001016	5.72943976639723	5.66885005102879	5.62161304080451	5.6216903342702	0.516059769915615	0.0944436155328708	0.336204156539845
Merged-chr1-9876994-4	chr1	9876899	9877099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133220, intron 6 of 17)	intron (NM_133220, intron 6 of 17)	28718.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	7.68246079253501	7.80806357550777	7.83296097460617	8.14714763959192	7.65813909897842	7.71087003067634	7.62102425069526	7.4404538181796	-0.36445749070206	0.0508028392309418	0.23372763403531
Merged-chr17-43568514-4	chr17	43568440	43568640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013737)	promoter-TSS (NM_013737)	89.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	6.41118784407804	6.41389725087549	6.38005012445184	5.83219730341075	5.75177159041716	6.28258782538276	5.78089480302264	5.61306072739326	-0.613198558818939	0.0339321693001083	0.181759538349104
Merged-chr1-131688679-4	chr1	131688570	131688770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311096)	promoter-TSS (NM_001311096)	-25.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	6.06914502802274	6.55306339564223	6.42308829049865	6.33427766492451	6.25078034174553	6.4545783028211	6.65032106414392	6.21489780443708	0.0614785560387275	0.797136973088494	0.921521740444505
Merged-chr15-79109334-7	chr15	79109212	79109412	+	956.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177461, exon 1 of 16)	exon (NM_177461, exon 1 of 16)	329.0	NM_177461	27008.0	Mm.196480	NM_177461	ENSMUSG00000033039	Micall1	AI448246|D15Mit260|D15N2e|EST573322|EST820961|MIRab13|mKIAA1668	microtubule associated monooxygenase, calponin and LIM domain containing -like 1	protein-coding	4.37888631956295	4.84683856756506	4.76734032748303	4.2504200540295	4.1320305878492	4.5987885776003	4.26714962232812	4.58514949668177	-0.39460004866696	0.342239368294487	0.651256676803456
Merged-chr11-76497898-4	chr11	76497815	76498015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198018, intron 1 of 21)	intron (NM_198018, intron 1 of 21)	-3420.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	6.37024942029427	7.02281812804568	5.88151381548403	5.45254579830349	6.07857513095411	6.65981653875375	5.94644349005926	5.53865031143873	-0.307699044659628	0.609388379609839	0.830967173169002
Merged-chr12-111907725-4	chr12	111907625	111907825	+	883.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011625, intron 1 of 16)	C-rich|Low_complexity|Low_complexity	330.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	4.83593963050654	4.4900032166948	4.39566256662971	4.93881375107344	4.78864980931222	4.52598814003373	4.84643899095583	4.48512716059083	-0.0500850215524115	0.8948440000367	0.96069135232764
Merged-chr10-82962855-4	chr10	82962733	82962933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie6|DNA|hAT-Charlie	-22664.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	6.67996690788463	6.84652022304267	7.22158100093663	7.14829555777703	6.08780049618134	6.39402688413735	6.53762460736742	6.40984285717253	-0.920415658862304	9.01673349077901e-05	0.00186137492210023
Merged-chr4-133887832-8	chr4	133887700	133887900	+	995.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285505)	promoter-TSS (NM_001285505)	-3.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	5.10140731915154	5.37638853050774	4.61437041037542	4.69741131261323	5.47721557860624	5.13729374538122	5.40210503661793	5.55040900441334	0.787566649748774	0.0219377699804862	0.136281072564237
Merged-chr14-70054349-4	chr14	70054258	70054458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-23087.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	7.03938402255831	7.41284223992585	7.41753135094587	7.05682973909888	7.00199966865251	7.12700430952027	7.32382351542569	7.08490155065266	-0.139107783018939	0.495242338497209	0.765570679090165
Merged-chr5-115897270-4	chr5	115897193	115897393	+	945.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007708, intron 8 of 46)	intron (NM_007708, intron 8 of 46)	51637.0	NM_007708	12704.0	Mm.8321	NM_007708	ENSMUSG00000029516	Cit	C030025P15Rik|CRIK|CRIK-SK|Cit-k	citron	protein-coding	4.53537784249176	4.86060984680255	4.617040210748	4.55329750518549	4.57158263705816	4.33307507603598	4.47339574875056	4.82948295389785	-0.172046544387289	0.640603233326034	0.848234068144109
Merged-chr10-22157598-3	chr10	22157503	22157703	+	638.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359809)	promoter-TSS (NM_001359809)	-966.0	NM_001359809	379043.0	Mm.439724	NM_198193	ENSMUSG00000053219	Raet1e	-	retinoic acid early transcript 1E	protein-coding	3.42285389469503	3.23475722652063	3.22325321528029	3.48709542143955	2.660454649961	2.88319083284921	2.97557469778003	2.69622388780142	-2.62465884381726	0.000205587966281533	0.00372260133603492
Merged-chr4-19895844-4	chr4	19895740	19895940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	26726.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	6.73174432471889	6.63486826503072	6.55923685155035	6.81459777843776	6.73075298565565	6.92401697963774	7.07609522536011	6.79976733645094	0.263166489324005	0.203273172349153	0.506060688141036
Merged-chr10-117983508-3	chr10	117983410	117983610	+	898.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	58051.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	3.82587548022433	3.98057864023669	3.67149791242828	3.97452763208353	3.64113829565916	3.40684301644633	3.85740843534336	3.72316323469519	-0.622846847071765	0.196110245072777	0.497130636206247
Merged-chr7-120984655-4	chr7	120984551	120984751	+	923.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028955, intron 1 of 7)	intron (NM_028955, intron 1 of 7)	2142.0	NM_028955	74466.0	Mm.189707	NM_028955	ENSMUSG00000030877	Mfsd13b	4933427G17Rik	major facilitator superfamily domain containing 13B	protein-coding	4.62393283574093	4.12128885962832	4.24770078663735	4.84942036166332	4.07110901462585	4.10534952985565	4.56597710707736	4.7256994648096	-0.248296062823549	0.584243424942959	0.8175571050965
Merged-chr12-99333671-4	chr12	99333584	99333784	+	720.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 3 of 5)	intron (NM_183186, intron 3 of 5)	116390.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	3.61232990607212	3.63140703603352	3.61279482705922	3.75121886727155	4.04687800544415	3.78671190954906	3.94445955237786	3.66694793327126	0.630694052318339	0.172043923938982	0.465252629537357
Merged-chr17-83668129-4	chr17	83668044	83668244	+	977.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-36249.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	4.94455857158006	4.80689362689839	4.61567696445532	4.38819781188476	4.70063702405034	4.79102203509132	4.78622861628208	4.87587536390369	0.208414155002722	0.559274808905121	0.803678792382
Merged-chr12-73671719-4	chr12	73671602	73671802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	AmnSINE1|SINE|Deu	86906.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	6.15112764148404	5.93277002037995	6.26454304854927	6.31659874723703	6.05453062365517	6.04475474507241	6.0608917119324	5.76158564160575	-0.299772013882661	0.22208481653169	0.530088701113617
Merged-chr9-90262754-4	chr9	90262633	90262833	+	855.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	L1MA4|LINE|L1	8036.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	4.48950687461823	3.90815979469647	4.41584519913578	4.34831042394259	4.27301858112401	4.13719328197147	3.83116994813198	4.15925241328221	-0.478830786379023	0.273452543080173	0.585086679409133
Merged-chr3-137867778-7	chr3	137867644	137867844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033155)	promoter-TSS (NM_001033155)	69.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	4.93678048853502	5.44356240122548	5.32499176043596	5.13326965581603	5.83946438099371	5.34064209554731	5.72883816680578	5.1935132044694	0.603933364925369	0.0582272109023512	0.253613673039925
Merged-chr4-11485893-4	chr4	11485809	11486009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347055)	promoter-TSS (NM_001347055)	-49.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	8.63335568022153	8.77036639826134	8.62566156276935	8.68461957033314	8.5952356788296	8.64351239536861	8.82101418540763	8.54532280412584	-0.0330347676069077	0.825138120550223	0.932947698311979
Merged-chr2-83724923-3	chr2	83724834	83725034	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 1 of 29)	CpG	537.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	4.91355949025294	4.69821146311677	5.21630721821318	4.9962287745884	4.94975646293466	5.09105071853206	5.35640759400583	5.40570398575043	0.456240020858716	0.165224847926869	0.455817195092694
Merged-chr14-54748479-3	chr14	54748376	54748576	+	834.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	33410.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	3.93501229208793	3.82260705811888	4.24272628429112	3.55060505185962	3.76439519770885	4.24643978011159	3.81672232108077	3.98181845076492	0.169265633630396	0.726339428479487	0.891034932051019
Merged-chr2-172399480-5	chr2	172399375	172399575	+	887.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	5681.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	3.35624018942034	3.40453190432635	3.24646371929371	3.32562260566242	3.21296907364478	3.16983502863851	3.17644753477163	3.12448480727019	-0.613946601848275	0.254617812871078	0.566074503446729
Merged-chr8-25597064-4	chr8	25596971	25597171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173012, intron 1 of 10)	CpG	416.0	NM_173012	270035.0	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	6.9740405112651	7.24979981873849	7.40055756230095	7.21700725926003	6.88802587106446	7.05839976788844	7.18584460880334	6.72773457967625	-0.338146600502829	0.101246910995711	0.349261116495284
Merged-chr2-155273525-3	chr2	155273408	155273608	+	957.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2856.0	NM_025735	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	4.87793096224163	4.87227988020971	4.85065376739643	4.2333022746998	3.65161739095412	3.80576816587907	3.52097814839453	3.53113474223535	-3.10636139325257	9.04323882701409e-09	4.8349219350292e-07
Merged-chr7-25805730-4	chr7	25805625	25805825	+	895.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028775, intron 7 of 8)	intron (NM_028775, intron 7 of 8)	10805.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	3.98111158575271	4.34820560308924	3.86663892472574	3.99721922441971	4.33808728700624	4.57302156803035	4.11985688094144	4.6519074485236	0.905117711851287	0.0318246806320851	0.174142753898462
Merged-chr19-11803220-4	chr19	11803109	11803309	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286543, intron 2 of 11)	B3|SINE|B2	16194.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	4.91646135815915	4.23351281356864	4.32784002483469	4.46740598436926	4.23458317988591	4.75327989899322	4.39828835848237	4.41551211913095	-0.117968558818693	0.77321452455125	0.911211873289787
Merged-chr1-91758848-3	chr1	91758741	91758941	+	807.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42620.0	NM_007855	13345.0	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	3.66127484215796	3.7171596021098	3.04766915966441	3.56344529454477	3.89598551425146	3.44128156523814	3.37772628046949	3.50363150707793	0.174040378692549	0.765630002401048	0.908325048600833
Merged-chr4-128638683-3	chr4	128638587	128638787	+	920.9722289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16015.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	3.57907268294132	3.24934720266175	3.43502731879457	2.83641796505859	4.77949187595705	4.41214362803162	4.29448121658281	4.8651844433682	4.16533344133008	9.57556894197701e-15	1.49142105409405e-12
Merged-chr9-77835945-4	chr9	77835844	77836044	+	773.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81409.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	3.98328490924128	4.13745187570678	4.23112067031545	4.31988854610075	4.1825064249578	4.26313423480649	4.56007337713583	4.18274928465783	0.290726599202403	0.475311037028203	0.752188683234561
Merged-chr15-89359805-4	chr15	89359700	89359900	+	831.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001115132, intron 1 of 19)	intron (NM_001115132, intron 1 of 19)	4081.0	NM_001271601	52683.0	Mm.143167	NM_001115132	ENSMUSG00000008690	Ncaph2	-	non-SMC condensin II complex, subunit H2	protein-coding	3.6914067760867	3.95185392035893	3.80255814239863	3.60497269287014	4.08255975379925	4.16783910615845	3.83855282046171	3.85233739484193	0.66161950626722	0.139792849449698	0.415775252617132
Merged-chr13-62558558-4	chr13	62558472	62558672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162911)	promoter-TSS (NM_001162911)	57.0	NM_175252	77117.0	Mm.440905	NM_175252	ENSMUSG00000074865	Zfp934	6720457D02Rik	zinc finger protein 934	protein-coding	5.44386931206251	5.34942059507006	6.39373581981089	3.3846635794219	5.34873626772433	5.20828451751081	5.38839126113475	5.41283777755863	-0.365086729769921	0.688325103847036	0.872728425878073
Merged-chr6-54867546-3	chr6	54867436	54867636	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199143, intron 2 of 4)	intron (NM_199143, intron 2 of 4)	50620.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	4.83188478735419	4.51970238250939	4.74017598538221	4.7615761178712	4.01356011743704	3.97715164800237	3.9561408036338	3.71712939025397	-2.00211955779622	3.16652760777048e-06	9.8985625205751e-05
Merged-chr15-12375728-4	chr15	12375603	12375803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081064, exon 19 of 24)	exon (NM_001081064, exon 19 of 24)	54207.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	6.76652522918608	6.87230533485977	6.76771351367914	6.69892687928764	6.80599740357021	6.72770323822451	6.74742405931052	6.65914134662926	-0.0478418549745219	0.807713680327876	0.92582798360164
Merged-chr3-108445231-4	chr3	108445122	108445322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204979)	promoter-TSS (NM_001204979)	37.0	NM_011319	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	7.02160256864109	6.75103760126768	6.82601013454218	6.93578572490375	6.91245452993756	6.88456425578399	7.40474695862904	6.84924465882057	0.200477345324439	0.357056397009449	0.66331987984392
Merged-chr6-134920395-4	chr6	134920320	134920520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009875)	promoter-TSS (NM_009875)	19.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	7.35295296900517	7.45301926173348	7.02813318500039	7.00813693696425	7.56254729604229	7.64876112618655	7.80962067935069	7.50324296214857	0.555998019869182	0.00502148894159494	0.0477057069379616
Merged-chr1-44101643-3	chr1	44101551	44101751	+	903.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029368, intron 2 of 7)	intron (NM_029368, intron 2 of 7)	790.0	NM_029368	75623.0	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	3.99119149570297	4.20202940506434	4.31335266884079	4.26621678759944	4.04413751695853	4.114579437479	4.21053449508077	4.13704571237326	-0.203932727532804	0.6134678436894	0.83329826063945
Merged-chr5-149068392-4	chr5	149068285	149068485	+	899.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15328.0	NM_010439	15289.0	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	3.76493199493078	3.71651330992859	3.47227634674758	4.05847756736139	4.12510596240029	3.71421545380982	3.98645575324166	3.70978091350877	0.331204668765974	0.50787249598568	0.773126660502261
Merged-chr2-80079789-4	chr2	80079666	80079866	+	952.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	-40864.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	4.80587586383559	4.63264833645812	5.20652882760032	5.60290286942587	4.87153311576772	4.72982872540849	4.85929281311547	4.84199537271612	-0.60787689469259	0.114281472471079	0.373859772452381
Merged-chr1-134065476-4	chr1	134065371	134065571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13684.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	8.96892114865487	9.02304495254586	9.36448940921992	9.03147055380744	8.74519322700571	8.97340919332029	9.10231199618356	8.84709468087935	-0.227463567853419	0.171099155714447	0.464172800862232
Merged-chr11-23067851-4	chr11	23067754	23067954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	54467.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	7.14273949965332	7.03281314229048	7.14397891640181	7.29917791349596	7.18857646928752	7.01218669280604	7.34588643389008	6.82964008659505	-0.0714345957932607	0.725399647181298	0.890917401015595
Merged-chr12-102437181-4	chr12	102437084	102437284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	RSINE1|SINE|B4	2629.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	7.22808128846344	7.05560527276787	7.61973885775373	7.28870369680055	7.41776607391698	7.24004059894521	7.4536064823397	7.52119998306646	0.137999202030382	0.487816521080569	0.761057402147961
Merged-chr2-72978624-4	chr2	72978520	72978720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045269)	promoter-TSS (NR_045269)	661.0	NM_001098425	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	5.40795181598142	5.7170764850017	5.69026502779825	5.64562430687096	5.79838841003692	5.76055437528735	5.89000238500111	5.63477277642831	0.249970767834574	0.334234977309131	0.644805241742718
Merged-chr6-51881365-4	chr6	51881252	51881452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018773, intron 9 of 12)	intron (NM_018773, intron 9 of 12)	131197.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	6.23063135202271	5.90124971382374	5.86908309237541	6.43563296793349	5.8379638615863	5.54182071418406	5.61089765328691	5.71651945262871	-0.7324364966607	0.00795046627176516	0.0669139522669436
Merged-chr14-122009703-4	chr14	122009585	122009785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 8 of 8)	ORR1D2|LTR|ERVL-MaLR	-24989.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	7.48723694910197	7.43212298004709	7.7456074283122	7.97926470986133	7.39192443318783	7.22753462279557	7.92034659340742	7.59255925516687	-0.169889962523091	0.450245273764052	0.735231557072919
Merged-chr12-112808879-4	chr12	112808749	112808949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145450)	promoter-TSS (NM_145450)	-126.0	NM_145450	217887.0	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Clba1|Flj20080	cDNA sequence BC022687	protein-coding	6.3075332106748	6.47409396933262	6.05534761774695	6.78433492205688	6.60335598897677	6.44685659665177	6.47008647587761	6.51497203871417	0.0837453384211476	0.735634117775471	0.895620853939579
Merged-chr3-28263263-2	chr3	28263163	28263363	+	966.2000119999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163007)	promoter-TSS (NM_001163007)	49.0	NM_026910	665113.0	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	3.05277026718917	3.00472262514474	3.17168022738542	2.7307406507904	3.36744233283834	2.80860449809946	3.15901326741245	3.32914442054393	0.774692082114683	0.213716464043978	0.519202846315107
Merged-chr16-37868329-4	chr16	37868234	37868434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177093)	promoter-TSS (NM_177093)	-66.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	6.8718139686632	7.10486859894629	6.42293056171501	6.81077318937426	7.31555566018703	7.43343613872094	7.27104308915044	7.26215847313866	0.674979035156417	0.00138087991273987	0.0174799308747841
Merged-chr2-131767701-4	chr2	131767622	131767822	+	857.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79934.0	NR_029381	414081.0	Mm.246905	NR_029381	ENSMUSG00000086822	5330413P13Rik	-	RIKEN cDNA 5330413P13 gene	ncRNA	3.83109150735803	3.58891994745779	4.27820730328594	4.29208975783261	3.64080866570389	3.51215985292357	3.96531003076291	4.23721393501909	-0.45215615049479	0.396959078522938	0.695569405558829
Merged-chr11-74469195-3	chr11	74469084	74469284	+	822.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 3 of 24)	ID_B1|SINE|B4	104513.0	NM_001011851	258153.0	Mm.376124	NM_001011851	ENSMUSG00000058275	Olfr412	MOR127-5P	olfactory receptor 412	protein-coding	3.52669701902636	3.53922468054001	3.95355252078463	3.29242530923326	3.41598978420529	3.64500531883698	3.39731422476642	3.68356990915412	-0.16668371888071	0.753301404194757	0.902798885097597
Merged-chr2-151979953-7	chr2	151979849	151980049	+	962.507935	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146127, intron 1 of 1)	CpG	270.0	NM_146127	73847.0	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	4.13262554320952	3.8808416238486	4.08711316649366	4.03772559670134	3.94374543751424	4.38939952060725	4.06935904846359	4.08463073359966	0.231094793516441	0.582831107456846	0.816777579274426
Merged-chr2-167775421-4	chr2	167775330	167775530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84253.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	9.27465164703177	9.34110931533286	9.09864916403021	9.06065261055394	9.061877122532	9.20768249052492	9.16726250718567	9.24108057666136	-0.0339989965024348	0.817394784682818	0.929835729412061
Merged-chr1-45881534-4	chr1	45881433	45881633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44061.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	7.9311674829883	7.90245600371666	8.33274231945628	7.97703351170169	7.84106516576177	7.85295356995541	7.71315312106513	7.75367674165871	-0.326078737937043	0.0655674658352032	0.272606696885744
Merged-chr2-31759906-4	chr2	31759805	31760005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001283045)	promoter-TSS (NM_001283045)	-34.0	NM_009594	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	5.72432221415104	5.6266825950201	5.45586056249622	5.71906841562752	5.62580313305191	5.66171230995446	5.62182642948468	5.8370046049321	0.072133901202191	0.782397203286837	0.91529005173258
Merged-chr6-145746558-7	chr6	145746445	145746645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-61838.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	6.20385864815468	6.25800197131787	6.75139782234595	6.42413827329472	5.96866696115137	6.2776316216858	6.2695580400652	6.47113118992789	-0.262475418419952	0.294803226547043	0.606891558075013
Merged-chr12-86949698-3	chr12	86949584	86949784	+	791.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173735, intron 1 of 3)	intron (NM_173735, intron 1 of 3)	2341.0	NM_001289432	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	4.08424472990561	3.50309151354256	3.63880841345883	4.07137586698167	3.46868980489818	3.3131027058727	3.67580310335002	3.33850775787612	-1.26001111133901	0.0201215300487935	0.128578004070659
Merged-chr2-116943372-6	chr2	116943247	116943447	+	864.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	43195.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	3.50889047678759	3.73564533808321	4.29334269573926	3.83874591633071	3.7932032194271	3.74896606422067	3.72627706719164	3.62849335604904	-0.424236740627205	0.393281870668326	0.69244311622625
Merged-chr15-100612061-4	chr15	100611947	100612147	+	805.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3063.0	NR_045701	78445.0	Mm.44383	NR_045701	ENSMUSG00000097093	C330013E15Rik	-	RIKEN cDNA C330013E15 gene	ncRNA	3.53815345505264	3.52309181007483	3.85837441788843	3.86365433573082	3.59512855845566	3.87997365713774	3.63990885644883	3.9899338879988	0.198381967927612	0.683840223072168	0.87046260876057
Merged-chr1-118320883-1	chr1	118320783	118320983	+	600.0	f0_c57.idr	promoter-TSS (NM_026472)	promoter-TSS (NM_026472)	-960.0	NM_026472	67949.0	Mm.280311	NM_026472	ENSMUSG00000026377	Nifk	AI852665|C130020J04Rik|Mki67ip	nucleolar protein interacting with the FHA domain of MKI67	protein-coding	3.45979092112768	3.60003080806152	3.34260658015629	3.15020864342409	3.38696562646702	3.68641435039157	3.74259726070925	3.34092397883176	0.526380405893323	0.32145754024968	0.63315055191495
Merged-chr19-34517415-4	chr19	34517301	34517501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	10073.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	5.97864602600016	6.09308391448745	6.41319980096402	6.43882171115585	6.17597817545842	6.20296640300622	6.346746325246	6.30445417546478	-0.00325603617366473	0.989182644608789	0.995658844162507
Merged-chr6-136555785-4	chr6	136555696	136555896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	36945.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	4.89445764917024	5.18336777681397	4.89525877426342	4.9445096716768	4.91528588776738	4.9548115861166	5.17054305938954	5.35947019884679	0.234373847812796	0.466187662422487	0.74629927630325
Merged-chr6-145857647-3	chr6	145857539	145857739	+	944.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_024469)	TTS (NM_024469)	7781.0	NM_024469	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	3.72993501265337	3.79418223704885	3.44914493338972	4.06341301322015	3.53934217237097	3.68511931311543	3.66418686512576	3.62315543537242	-0.514913502214917	0.302716509261287	0.615215855664921
Merged-chr8-123859374-6	chr8	123859190	123859390	+	967.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028536, exon 2 of 4)	exon (NM_028536, exon 2 of 4)	919.0	NM_028536	73420.0	Mm.157746	NM_028536	ENSMUSG00000031971	Ccsap	1700054N08Rik|AI853424	centriole, cilia and spindle associated protein	protein-coding	5.31088301500226	5.30931009599173	5.8481307111322	5.55099988931059	5.0768709775542	5.51943636954849	5.64089594226625	5.53988668681788	-0.124705780725117	0.687695668949149	0.87244661925875
Merged-chr1-173763276-2	chr1	173763181	173763381	+	705.599976	f0_c57.idr|f1_balb.idr	intron (NM_008329, intron 1 of 8)	Lx8|LINE|L1	3638.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	2.89278840218437	2.81141929500653	2.89308570581273	2.31848107844901	4.06309537713345	4.31177441745272	3.6840345173679	4.2416802743331	7.9748827858578	3.69866755501591e-16	7.23262246973838e-14
Merged-chr12-25096200-4	chr12	25096124	25096324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010496)	promoter-TSS (NM_010496)	-132.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	8.57388629374723	8.58014789253392	8.76743363400987	8.78740089800491	8.95306998497033	8.98621350175625	8.95053192694107	8.84982063062973	0.313462058353191	0.0325759704059481	0.176812947805779
Merged-chr1-165768490-4	chr1	165768391	165768591	+	897.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 2 of 4)	B4A|SINE|B4	4733.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	4.6527643267366	4.88453376603095	5.230528233953	4.73578011542704	4.51093255720858	4.8677461230935	4.46010490150482	4.52270640827686	-0.617915638557497	0.0943503507959217	0.336071650883514
Merged-chr1-46853614-4	chr1	46853505	46853705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172653)	promoter-TSS (NM_172653)	13.0	NM_001356416	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	8.5892578653542	8.5509395174669	8.27090664021585	8.61467925248983	9.07206477650268	8.93974818851552	8.86473239464466	8.67134129261627	0.475725261486364	0.00430561722402649	0.0424649478161261
Merged-chr17-34304916-4	chr17	34304825	34305025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010382)	promoter-TSS (NM_010382)	-942.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	7.35061646247289	7.65570662404007	7.20726512646867	6.67178480365039	7.96672591421927	7.96066847414647	7.78908595121377	7.66100790520484	0.782001524213507	0.00101337702108319	0.0135827505555763
Merged-chr11-90234672-4	chr11	90234548	90234748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3b|LINE|CR1	-14828.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	6.54502238459185	6.91644406054879	6.05555976017065	6.31960918029789	6.59803727359239	6.322495518918	6.36417803933528	6.02802106989921	-0.216164058244877	0.431611557621415	0.72175353009052
Merged-chr2-31130935-3	chr2	31130858	31131058	+	845.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	intron (NM_001355105, intron 1 of 15)	11050.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	4.07642774014763	3.82849122630326	3.89637915206698	3.87377351734623	4.00860689053403	3.80389507833848	3.72724088365195	3.68387626853952	-0.274351638995253	0.544054463769958	0.795027379566929
Merged-chr16-30510875-5	chr16	30510927	30511127	+	999.159973	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172614)	TTS (NM_172614)	39551.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	3.38273786023042	3.44258725623522	3.58807199815282	3.35214583560907	3.15192307008399	3.31654093446286	3.2554280692163	3.38135212123668	-0.599633754237609	0.256338723856474	0.567949138560044
Merged-chr7-27447842-4	chr7	27447746	27447946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144923)	promoter-TSS (NM_144923)	-132.0	NM_144923	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	9.10873745212737	9.31695304480156	9.21605161528012	9.03203033895339	9.31688833268289	9.43661489625684	9.42554275793791	9.21043530553582	0.221084340778425	0.13365578829996	0.407028851897612
Merged-chr2-151536065-4	chr2	151535986	151536186	+	848.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6397.0	NR_126058	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	4.30897129123285	4.58212501280774	4.26543424420572	4.35205971142989	4.03528934834955	4.29819071236011	4.29033052269045	4.16970578651002	-0.464860241760381	0.239543001523255	0.550002061893054
Merged-chr16-36717659-4	chr16	36717588	36717788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285791, intron 5 of 6)	intron (NM_001285791, intron 5 of 6)	23710.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	7.87404784488995	7.94108581161385	8.01018306821953	8.17550240567638	7.49895366493504	7.33303327497869	7.51499861346839	7.26970813691399	-0.786106759907259	8.86120927948529e-06	0.000247442924795796
Merged-chr6-72958439-4	chr6	72958346	72958546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039392)	promoter-TSS (NM_001039392)	37.0	NM_025284	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	5.64097363140789	5.70205118870887	5.5113896219929	5.6979293906042	5.56146748166592	5.34501145646549	5.27655163424919	5.45132698302165	-0.386080143299727	0.156640430475041	0.442669202397386
Merged-chr5-86085163-4	chr5	86085063	86085263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310639, intron 3 of 7)	intron (NM_001310639, intron 3 of 7)	13417.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	6.89684971542377	6.80822345157262	7.50269996961823	7.34385578074243	6.9996664432791	7.23445482299758	7.46559083557453	7.32992324596709	0.120355313443738	0.606246203519233	0.829351704182035
Merged-chr8-45345204-4	chr8	45345105	45345305	+	907.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153535, intron 8 of 13)	intron (NM_153535, intron 8 of 13)	-12009.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	4.72996700453308	4.4179968492817	4.69324517407408	4.89163061184966	4.38468526950536	4.86517944055348	4.59343961914029	4.7276018248463	-0.130056327440288	0.725614627251889	0.890921883682774
Merged-chr10-14209620-4	chr10	14209512	14209712	+	719.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	243233.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.40522157304538	4.10715680895771	4.16055341982281	4.39241400875517	3.99534039896089	3.65600829798163	4.186066966696	4.064483993013	-0.74216240145418	0.0905171167007446	0.328619700583612
Merged-chr11-8424416-4	chr11	8424282	8424482	+	902.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	240153.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	3.75717682861028	4.09949181147179	3.44874142137553	3.75223081397239	4.09076493148187	3.93265997302408	4.15835281400636	3.86150849839887	0.640609501375478	0.174073428901316	0.468338849250332
Merged-chr19-37147359-4	chr19	37147265	37147465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 2 of 10)	PB1D9|SINE|Alu	-26478.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	7.10285133970623	6.79318160734196	7.12627764147054	7.2848068074151	6.67071236746984	6.34959341005784	7.04575763822926	6.56266958773265	-0.573501788004843	0.0148530172693266	0.104098357248267
Merged-chr9-21241513-4	chr9	21241409	21241609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2177.0	NM_001110306	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	5.64996995337007	5.46783510439811	4.8363552916242	5.24740129016	5.39415069995007	5.288300249028	5.28119868277176	5.47392690654798	0.0576749684407074	0.855759131949374	0.945737752088283
Merged-chr9-46009121-6	chr9	46009054	46009254	+	723.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357241, intron 1 of 5)	RMER10A|LTR|ERVL	3536.0	NM_001357241	18475.0	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	2610005M20Rik|AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	3.4201191285235	4.01658443413919	3.42050822478005	3.47104040994079	3.96846490553624	4.17736663909437	3.65169903684179	3.91821130039707	0.964892561916203	0.0591254856196831	0.256224836585901
Merged-chr5-112266391-7	chr5	112266308	112266508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312893, intron 4 of 5)	intron (NM_001312893, intron 4 of 5)	-10283.0	NM_001326590	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	5.12039335700263	5.48264222857899	5.77703487586513	5.32632278097016	5.53087653405684	5.7063125524594	5.42108813357016	5.70440263981153	0.261483826547843	0.372719034748788	0.676451504400639
Merged-chr4-133873089-4	chr4	133872977	133873177	+	982.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009097, intron 2 of 21)	intron (NM_009097, intron 2 of 21)	1654.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	5.77439509842048	5.71625799257732	5.37815836062637	5.16107868708562	5.71407139620754	6.01410584987226	5.57688687121308	5.09896027595629	0.203437744956547	0.540361962596254	0.792761667540263
Merged-chr11-32542957-4	chr11	32542856	32543056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	9690.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	7.73004533271279	7.53576682824728	7.95656311102248	7.85212525196778	7.38028494632489	7.23012763210798	7.47557970904725	6.90657078885224	-0.675475052869471	0.000935572550224356	0.0127475341792533
Merged-chr2-171633556-3	chr2	171633457	171633657	+	946.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	329242.0	NR_040509	75655.0	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	2.78584962074158	2.94168056818951	2.66822384065085	2.78944661219983	2.31247665895274	2.41800289974871	2.38869128386819	2.4672355777922	-2.5385196211302	0.00168393217583398	0.0204336281962182
Merged-chr19-10880260-4	chr19	10880150	10880350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134142, intron 1 of 3)	intron (NM_134142, intron 1 of 3)	1493.0	NM_134142	68539.0	Mm.251890	NM_134142	ENSMUSG00000034659	Tmem109	1110006I15Rik|AA958958|C77652	transmembrane protein 109	protein-coding	7.58897680753971	7.50363463496698	7.53820639600054	7.47887844320673	7.31210841495636	7.32369715159457	7.44690832129908	7.26761924176994	-0.248554110155594	0.146915701036646	0.42761123563813
Merged-chr10-18887116-4	chr10	18887019	18887219	+	928.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42048.0	NM_022032	64058.0	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	5.19946069732923	5.20440337720437	5.29325607096575	5.94234347705471	4.96121667950859	5.13270288980118	4.7215225312844	5.43053367312669	-0.702792513219163	0.0544441940990739	0.243534247246073
Merged-chr18-73749613-3	chr18	73749519	73749719	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053255, intron 1 of 3)	intron (NM_053255, intron 1 of 3)	4860.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	3.99073709919897	4.41779769469382	4.6930426263474	4.47895412225883	3.98274500671514	4.00056294153886	4.4282088388244	3.98906081763726	-0.760257112416133	0.0838775976785837	0.31494031361312
Merged-chr18-84293143-4	chr18	84293036	84293236	+	913.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	204978.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	4.42501835669928	4.31325393107082	4.85014779022303	4.36564322229014	4.53111895164821	4.37320298342629	4.31938267850776	4.08923592441628	-0.353555945995117	0.383682896791414	0.685513313856172
Merged-chr8-92854902-4	chr8	92854801	92855001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173014)	promoter-TSS (NM_173014)	-432.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	7.07538812185165	7.28115542357328	6.97867549592026	6.9449334647697	7.00314112952389	6.85599993191633	6.99315792437769	6.94803216451	-0.163036958267333	0.404170824634855	0.701345111452848
Merged-chr9-123808766-4	chr9	123808673	123808873	+	941.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030712, intron 1 of 1)	intron (NM_030712, intron 1 of 1)	2296.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	5.10994395378077	4.5256843018828	4.68820047451258	4.85700715744307	4.8563722415663	5.15671472178017	5.14331761776683	4.64284986928271	0.300304050289341	0.399780999427268	0.697861775510926
Merged-chr4-143210901-3	chr4	143210795	143210995	+	686.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256380, intron 1 of 7)	intron (NM_001256380, intron 1 of 7)	1814.0	NM_001081355	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	2.92636071245394	3.23063359547541	2.92666016133409	3.15777077200556	3.11701858271122	3.09792154474271	3.09942859303619	3.05077888517795	0.0670805077980021	0.907551511792848	0.96572638861679
Merged-chr13-5863741-4	chr13	5863623	5863823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011803, intron 1 of 3)	intron (NM_011803, intron 1 of 3)	2234.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	6.78113194440952	6.87045124727377	6.79662495734567	6.89878009515237	6.7619636468003	7.04198910075725	6.74786906670142	6.90063860665365	0.0271649376511309	0.8904600205404	0.958997364311038
Merged-chr19-46152391-4	chr19	46152289	46152489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178930)	promoter-TSS (NM_178930)	-169.0	NM_178930	107338.0	Mm.271620	NM_178930	ENSMUSG00000025224	Gbf1	1700083E03Rik|AI035702|AW049900|mKIAA0248	golgi-specific brefeldin A-resistance factor 1	protein-coding	8.71445141408504	8.96813521530069	8.6299154972147	8.8025861563397	8.40748570065376	8.34453834199123	8.10880915602686	8.2956560399637	-0.618006114018059	0.000138378663901083	0.00266783719334107
Merged-chr9-111552053-4	chr9	111551933	111552133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112952.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	5.84107620158561	5.3835648039077	5.31907984398691	5.8313346687889	5.87879169297694	5.87368258450604	5.76664622083293	5.81519756268233	0.336057586162897	0.228717392300789	0.537520231999797
Merged-chr11-71251506-3	chr11	71251420	71251620	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027858, intron 8 of 12)	RMER21A|LTR|ERV1	-20787.0	NM_001040696	637515.0	Mm.390402	NM_001039680	ENSMUSG00000070390	Nlrp1b	Nalp1b	NLR family, pyrin domain containing 1B	protein-coding	4.17240015211396	3.97771615937475	4.17310827713262	2.48129751037092	7.4851309263094	7.62534711251978	7.61966949517153	7.45937287402609	11.137909160823	1.75097578701863e-34	3.27980804063682e-31
Merged-chr16-87623929-4	chr16	87623836	87624036	+	831.895813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	70606.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	4.26971915437403	4.09498343530826	4.55402558286518	3.92808681102354	4.28605943485587	4.30354449942016	4.49557308392657	4.43723301036702	0.404174991290449	0.326684623960321	0.638189835571184
Merged-chr11-121434952-4	chr11	121434851	121435051	+	985.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022014)	promoter-TSS (NM_022014)	-2.0	NM_001038699	63828.0	Mm.266448	NM_022014	ENSMUSG00000025175	Fn3k	2310074G21Rik	fructosamine 3 kinase	protein-coding	5.8028017057039	5.32361291191511	4.74751175465699	5.35380020675511	5.03734118584118	5.17385234317943	5.24014576438767	5.26269000248232	-0.329208486302023	0.341190991880875	0.650275314861081
Merged-chr11-115187344-4	chr11	115187247	115187447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025400)	promoter-TSS (NM_025400)	-31.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	8.27025852133393	8.34650119940773	8.17109849415081	8.01177798756237	8.24466584800612	8.55718437741452	8.26631200414242	8.26047742945726	0.17306261140603	0.308860277869604	0.621220314744144
Merged-chr15-8433607-6	chr15	8433570	8433770	+	859.952759	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 1 of 45)	intron (NM_201232, intron 1 of 45)	10793.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	3.22064626107901	3.20781414792844	3.62363975263837	2.98616211004471	3.25060547829191	3.07123838593036	2.95208904536559	3.4362958748652	-0.306365162060278	0.614471451437887	0.83391422634463
Merged-chr2-32882801-4	chr2	32882674	32882874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 1 of 13)	intron (NM_146119, intron 1 of 13)	6640.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	7.21188096173525	7.40940102425872	6.94236538549861	6.90106634951553	6.96588008346667	7.02413589437783	6.85375127391313	6.84197290157553	-0.280289473562298	0.185518416073699	0.483497702336656
Merged-chr9-89221015-4	chr9	89220919	89221119	+	886.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359993, intron 2 of 2)	intron (NM_001359993, intron 2 of 2)	9635.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	5.06838482313285	4.71302563110083	5.57860879255134	5.34098253418561	4.11686134599528	4.15625754105614	4.35022073966089	4.46544619590362	-2.04469066750477	4.80777864909492e-07	1.78794606302992e-05
Merged-chr5-143818182-1	chr5	143818082	143818282	+	1000.0	f0_balb.idr	Intergenic	CpG	-53680.0	NM_013557	15467.0	Mm.389709	NM_013557	ENSMUSG00000029613	Eif2ak1	HCR|Hri	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding	4.79526077969199	4.13119765523309	4.6994641880699	4.44178516724812	4.01194918003372	4.48474359348476	3.9297693040815	4.39488044166526	-0.746940754534148	0.088343138597472	0.324266515172724
Merged-chr6-145123916-4	chr6	145123827	145124027	+	864.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008511, intron 1 of 18)	intron (NM_008511, intron 1 of 18)	2188.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	4.31514537149061	4.0178869442137	4.23176885033677	4.21422915672991	4.16647508700551	3.88679136091957	4.33555282995574	4.13922507022531	-0.134096476396519	0.745174611006617	0.899431814827356
Merged-chr11-120515694-4	chr11	120515564	120515764	+	983.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15063.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	4.70158153588871	5.01335807806394	4.62172394857381	4.59478734638429	4.88099219838169	4.79640610140145	4.68042222594987	4.6992750448158	0.0699539069765372	0.839963263763787	0.939166584762349
Merged-chr1-180904239-4	chr1	180904144	180904344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133705)	promoter-TSS (NM_133705)	-30.0	NM_133705	69051.0	Mm.274180	NM_133705	ENSMUSG00000026520	Pycr2	1810018M05Rik|P5cr2	pyrroline-5-carboxylate reductase family, member 2	protein-coding	7.14562363343834	6.86576659714431	6.60087184277958	6.7572669072103	7.16013492730031	6.8455332396486	7.3139462954323	7.11952352303059	0.375458800171688	0.0820095060132912	0.310944155357165
Merged-chr6-89257066-4	chr6	89256971	89257171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28654.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	6.82059917339194	6.74458250232973	6.67239078336168	6.71730484070704	6.81038046783005	7.06707918155467	6.74427638481612	7.51959815772517	0.461045911800406	0.050496605274859	0.233108364151967
Merged-chr3-96302816-4	chr3	96302716	96302916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8847.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	6.3338034842035	6.05489634074468	6.27877731656655	6.59302807771475	6.16893669303655	6.74031387593065	6.30255981496948	6.48522272570786	0.136010738378843	0.593613601385256	0.822903878257336
Merged-chr3-109254154-4	chr3	109254055	109254255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86528.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	5.94956475707412	5.33687227849657	5.26091608827636	5.43876081657132	6.02050105279509	5.66345085172177	5.57066730394531	6.06318624118052	0.554408346013348	0.0666446482502093	0.27520446816741
Merged-chr9-65357130-4	chr9	65356958	65357158	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016688, intron 4 of 4)	B1_Mus2|SINE|Alu	-4002.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	4.39578462168289	4.46128194153655	4.66915786617328	4.86051399069314	4.08265629199848	4.38710919397615	4.28771012250283	4.30387411989254	-0.851806583391928	0.0304858197711779	0.169012397031908
Merged-chr1-156985922-2	chr1	156985822	156986022	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46296.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	2.3368617869525	2.20462944165609	2.2580579672137	2.02017218333057	2.44037796774378	2.59386356858991	2.8817630516856	2.84303994047941	3.1733978179392	7.98379312644298e-05	0.00167831781142081
Merged-chr12-73610243-4	chr12	73610140	73610340	+	912.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	25444.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	4.86383092208009	4.54628107111192	5.18806744437116	5.30329336064046	4.24010121899192	4.24320077270838	4.36192519880329	4.42630939411593	-1.54114548459526	9.86660262779339e-05	0.0020083386199304
Merged-chr1-173366189-4	chr1	173366033	173366233	+	630.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053199, intron 1 of 8)	intron (NM_053199, intron 1 of 8)	1562.0	NM_053199	94332.0	Mm.330524	NM_053199	ENSMUSG00000005338	Cadm3	BIgR|Igsf4b|Necl-1|Necl1|SynCAM3|Tsll1	cell adhesion molecule 3	protein-coding	3.23064928777448	3.3100748615677	3.16987986834877	2.63608422453412	3.57646510804165	3.15133535195889	3.33162533721164	3.44861036958552	1.01834315047732	0.107230145344646	0.361286306706737
Merged-chr12-79351467-2	chr12	79351367	79351567	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	54116.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	3.05709776239561	2.84360588716237	3.17022111464173	2.76543431578718	3.06758563492434	3.04335094670499	2.98646660279922	3.11336305502387	0.404275301501814	0.496761957297375	0.76667505410281
Merged-chr17-5541318-3	chr17	5541218	5541418	+	728.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	48718.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	3.45730060981423	3.61729562901397	3.4037355994823	3.679688771997	3.17255849178171	3.203412170228	3.33493701461161	3.22505226456541	-1.16590611173499	0.0299814495095648	0.167218723544497
Merged-chr10-80744447-4	chr10	80744377	80744577	+	990.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2202.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	5.41040971574974	5.30586243062667	5.32530781654767	4.94711088915843	5.42251168834819	5.04819425029539	5.56326166788618	5.40754965681596	0.248343956196497	0.424493592991494	0.716216287447796
Merged-chr14-8109157-3	chr14	8109073	8109273	+	745.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	RMER15|LTR|ERVL	10962.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	2.95696460325938	2.93071843869609	2.95727733254541	3.33258508638828	2.98499962867473	3.25636290567993	3.39232326115789	3.14351947566171	0.499113659629232	0.41522031872896	0.709525428617195
Merged-chr14-73138744-4	chr14	73138624	73138824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3786.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	7.33824285446517	7.23017392988763	7.03442071719758	7.26560608261788	7.29603955015299	7.43336932121951	7.26233926435051	7.15121477492593	0.0860193992610603	0.642208785601921	0.849045843168691
Merged-chr5-137683914-3	chr5	137683858	137684058	+	806.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303271, intron 1 of 12)	ID_B1|SINE|B4	795.0	NM_001303271	231801.0	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	3.60432934383893	3.66242239357519	3.39032862837744	3.22393727283184	3.31212889288403	3.44482169973063	3.37763053316007	3.55242278059203	-0.176220120697867	0.738280537735824	0.896701754212797
Merged-chr4-33895183-4	chr4	33895092	33895292	+	884.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-29167.0	NM_001355020	12801.0	Mm.7992	NM_007726	ENSMUSG00000044288	Cnr1	CB-R|CB1|CB1R	cannabinoid receptor 1 (brain)	protein-coding	4.60581445647576	4.73265455620381	5.02248561031428	5.34788243085864	4.09532088797852	4.46598560794843	4.54377145046184	4.38096840904639	-1.31670691533469	0.00106429794399133	0.0141467158460054
Merged-chr5-130030024-3	chr5	130029931	130030131	+	797.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007761, intron 1 of 5)	MTD|LTR|ERVL-MaLR	725.0	NM_007761	12909.0	Mm.18072	NM_007761	ENSMUSG00000025532	Crcp	AL022669	calcitonin gene-related peptide-receptor component protein	protein-coding	3.55656079349612	3.12569233551271	3.2239133144126	3.78759694376934	3.36445948471431	3.33530395467945	3.27419760338616	3.39942830795346	-0.413835961992358	0.469535978918777	0.748378822236993
Merged-chr7-132315625-4	chr7	132315527	132315727	+	921.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028578)	promoter-TSS (NR_028578)	-37.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	4.84913509112306	4.53610033468641	4.97874376260096	4.72782331679383	4.73053738488324	4.53913298914907	4.38922568500665	4.7406678779819	-0.346162730222985	0.336635561042852	0.646591359476204
Merged-chr4-46536116-4	chr4	46536026	46536226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029077)	promoter-TSS (NM_029077)	15.0	NM_029077	74735.0	Mm.240252	NM_029077	ENSMUSG00000039853	Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding	5.57645053879864	5.6075457989758	5.70521046709511	6.00909737318512	5.64408913447271	5.48719263545161	5.34718676266128	5.51858798274537	-0.414116721719387	0.141582717736295	0.41871847539271
Merged-chr10-95617029-4	chr10	95616930	95617130	+	881.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-52884.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	4.6832258081004	4.65937159664935	4.44771320979851	4.93528137217504	4.28748209264059	4.39019849195936	4.29245876070782	4.44491873942213	-0.814675727025165	0.0307688299544639	0.170091219891953
Merged-chr19-42152158-4	chr19	42152072	42152272	+	917.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_183195)	TTS (NM_183195)	4783.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	4.52892223147534	4.44297320236291	4.40228908674582	4.58471179004868	4.5291219675889	4.53163799906737	4.38285610241677	4.71391428272154	0.0998217140855495	0.78214243182355	0.915237231838361
Merged-chr2-118025986-4	chr2	118025884	118026084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	Tigger6a|DNA|TcMar-Tigger	85218.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	6.7660732420649	6.79978417713343	6.80662556253109	6.84986627537786	5.8335641496329	6.13383019878307	5.92229723132437	6.47963651264483	-1.03848191107937	1.33327421954943e-05	0.000357443034551069
Merged-chr9-75369426-2	chr9	75369327	75369527	+	774.416687	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	21669.0	NM_013479	12049.0	Mm.25988	NM_013479	ENSMUSG00000032191	Bcl2l10	AA420380|AU023065|Boo|C85687|Diva	Bcl2-like 10	protein-coding	3.54803205861187	3.69222193033933	3.49630741039049	3.24124655521099	3.43105965067076	3.24083609137751	3.53372998918608	3.32390805778755	-0.36676400389365	0.492144951845205	0.763346782261791
Merged-chr8-77550347-4	chr8	77550246	77550446	+	990.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081240, intron 1 of 11)	MER20|DNA|hAT-Charlie	949.0	NM_001081240	102182.0	Mm.197630	NM_178903	ENSMUSG00000037134	Prmt9	AI931714|Prmt10	protein arginine methyltransferase 9	protein-coding	5.39816974483501	4.90214384420658	5.03160964105501	5.27065181645673	5.35001274066382	5.24160105379075	5.290210477371	4.83751534771555	0.0583784474110035	0.857422278775625	0.946298254907789
Merged-chr17-12119227-4	chr17	12119121	12119321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026644)	promoter-TSS (NM_026644)	-63.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	7.50932416422291	7.77881215207817	7.71171977992563	7.89357090587069	7.52448731556384	7.5585215700618	7.83271242142049	7.66542759450196	-0.119770000385026	0.510948651443029	0.775074357160952
Merged-chr1-150374827-1	chr1	150374727	150374927	+	753.0	f0_balb.idr	exon (NM_145511, exon 11 of 14)	exon (NM_145511, exon 11 of 14)	-18011.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	3.07972335866432	2.75347178141892	3.08022136777583	3.38240040571826	2.3144580318101	2.45460237506363	2.42827216303472	2.51274863298347	-5.26078134126747	3.8164282736186e-06	0.000116838515306623
Merged-chr12-34682856-3	chr12	34682732	34682932	+	822.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	Lx8b|LINE|L1	-153943.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	4.14729760946538	4.42722241872902	4.14794283481402	4.29749774961684	3.80421845679642	3.79802399396079	3.83900135679807	3.79603221351233	-1.25694694557592	0.00383560032915867	0.0387639068336199
Merged-chr9-41137248-4	chr9	41137155	41137355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	20807.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	6.42230305655564	6.97103787742288	6.74780462151363	6.77809921414862	5.85309393445694	5.78660079475229	5.93089063846994	5.65986749486949	-1.41845488441225	5.84246429655246e-09	3.25399660535452e-07
Merged-chr17-32364506-4	chr17	32364405	32364605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033525, intron 4 of 10)	intron (NR_033525, intron 4 of 10)	-13928.0	NM_017476	54194.0	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	6.54755305676224	6.70795627329882	6.23848874402161	6.24094351389659	6.8855853082887	6.80281076711422	6.56260612407915	6.37098440501147	0.339673696535892	0.160523877616116	0.448715634744611
Merged-chr1-160861371-3	chr1	160861273	160861473	+	972.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45038.0	NM_001024952	381305.0	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	4.39670139321667	4.79856003553231	4.67304665729438	5.05198122589647	3.95681652401912	4.05447495536633	4.13964480135488	4.3945953061369	-1.48154156632606	0.000383338927537123	0.00621258686775156
Merged-chr11-22858684-2	chr11	22858584	22858784	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	1051.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	3.95352356471892	4.10509267277869	4.29519946910809	3.98097357230803	3.78363975495783	3.97385713807594	3.93727299487328	3.55576245231321	-0.741107784209305	0.104221148477609	0.354894375328312
Merged-chr4-154011812-4	chr4	154011728	154011928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201226)	promoter-TSS (NM_201226)	25.0	NM_201226	72946.0	Mm.260690	NM_201226	ENSMUSG00000029028	Lrrc47	2900010D03Rik|AA960559|mKIAA1185	leucine rich repeat containing 47	protein-coding	6.60992219315688	6.29824375872905	6.50128120317294	6.54689301835406	6.38637093383687	6.38461454418809	6.67781622142224	6.20274594358838	-0.104854975894048	0.643763102875917	0.849901404168518
Merged-chr10-13273927-4	chr10	13273780	13273980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359294, intron 2 of 11)	intron (NM_001359294, intron 2 of 11)	50409.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	6.62296651999141	6.2200781737354	6.65414993431134	6.90247512319616	6.36142800546677	6.37221614586912	6.67787504291996	6.47476217288356	-0.23185079085268	0.339793774222432	0.648910202172636
Merged-chr18-4349790-4	chr18	4349732	4349932	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 1 of 7)	intron (NM_007746, intron 1 of 7)	3121.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	5.16947417996986	4.75463334194601	5.0114459684241	5.28329475280716	4.67418050023525	4.88596700508695	5.33627159739245	4.78705224015224	-0.267300954316517	0.454426071105062	0.738247895996421
Merged-chr11-9388679-4	chr11	9388560	9388760	+	897.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 31 of 61)	intron (NM_178259, intron 31 of 61)	196718.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	4.57158269285781	3.9982242077755	3.95218989082756	4.58795410590232	4.50982580127096	4.01727975561081	4.28017384215647	4.25254841460036	-0.0936668028534809	0.836022416559363	0.937579599304841
Merged-chr7-46639817-4	chr7	46639716	46639916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013789)	promoter-TSS (NM_013789)	-9.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	7.35321283247085	7.24773334754715	7.20903350993824	7.62201976983756	7.05622862209773	7.08991435314007	7.02138141963248	6.97506522056607	-0.470031121820806	0.0164305502615537	0.111968419058605
Merged-chr1-120467528-3	chr1	120467426	120467626	+	758.0888669999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37498.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	3.39684466828712	3.21657974995405	3.54090676272214	2.95250920217696	4.32701190444861	4.18671289650114	4.79311573828961	4.52380484962216	3.69808224909867	4.7181829494368e-13	5.40141898779205e-11
Merged-chr7-132347813-4	chr7	132347684	132347884	+	902.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30556.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	4.52288013249009	4.45302556465111	4.08417582700828	4.23052020013204	4.2707379646115	4.49428249117073	4.38658017688117	4.02857517534569	-0.0616427873652852	0.87914617860862	0.954746715269166
Merged-chr4-88438085-4	chr4	88437997	88438197	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025760, intron 1 of 6)	intron (NM_025760, intron 1 of 6)	829.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	5.14081015750621	4.9380530712938	4.93392108421004	5.44148791204322	4.98432796190173	4.99439230776494	5.32064956044475	5.16967385110368	-0.0578252507183714	0.861351618043686	0.947603037485356
Merged-chr5-101990493-3	chr5	101990392	101990592	+	757.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	79429.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.28794459356679	3.28307969624916	3.45676410862667	3.60270145970767	3.39533599753537	3.27234878854687	3.33467832979233	3.45483353488198	-0.204478366825839	0.697997278199996	0.878128393810271
Merged-chr3-65387089-3	chr3	65386990	65387190	+	824.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026155, intron 3 of 4)	Lx9|LINE|L1	5463.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	3.14836544991947	3.31001791644228	3.20532585495732	3.25541186269263	2.99003634619545	2.92808756831759	2.95358254766859	3.20357728258355	-0.857357287189232	0.138243808285417	0.413638909998221
Merged-chr3-89807349-4	chr3	89807234	89807434	+	933.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24036.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	4.2168505343063	4.00290605127148	4.17120310837878	4.39282571579829	3.87277399919015	3.91462736065882	4.61572355356223	4.49851797053635	0.137055141174976	0.765954595938552	0.908437593673418
Merged-chr3-144232556-3	chr3	144232476	144232676	+	692.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27321.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	3.26989780264602	3.21620641698732	3.58928218329254	3.45453266232232	3.35013865606768	3.31955529257976	3.37264451918811	3.32757892989838	-0.177570056444967	0.73512872476638	0.895431262597044
Merged-chr1-167343881-1	chr1	167343781	167343981	+	777.200012	f0_balb.idr	Intergenic	Intergenic	-6110.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	3.70604801958416	3.46483872519809	3.9677857693735	4.10389364842588	3.0435395134642	3.36362186309677	3.36577088301049	3.10295319441586	-2.23164543878245	0.000181325894412359	0.00335236255542267
Merged-chr11-121734414-4	chr11	121734301	121734501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	31974.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	7.02397061745603	7.06728629990864	6.62821640495516	6.49099532544731	6.80938157173648	7.27245228522155	7.08298909011174	7.27242813132288	0.416104030675034	0.0773558115893993	0.300748815442531
Merged-chr1-125470966-4	chr1	125470836	125471036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35209.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	6.50280922823	6.34662790670996	6.80166625363834	6.78193826318231	6.57074367428369	6.24674317739574	6.51990022523065	6.70055303980548	-0.152841777435673	0.510826718362008	0.775005008659931
Merged-chr19-56703891-4	chr19	56703790	56703990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18482.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	7.81132942975183	8.07936969422065	8.00664270079636	7.50320267180699	7.43683734817855	7.76936473274452	7.51833455566894	7.59550804909189	-0.366571716190481	0.0682434527464845	0.278910239035486
Merged-chr5-104859809-2	chr5	104859708	104859908	+	968.333374	f0_c57.idr|f1_c57bl6.idr	5' UTR (NM_001039231, exon 1 of 5)	5' UTR (NM_001039231, exon 1 of 5)	219.0	NR_155269	626391.0	Mm.385405	NM_001039231	ENSMUSG00000072774	Zfp951	C230055K05Rik|Gm38611	zinc finger protein 951	protein-coding	2.99175559698083	2.90487779896453	2.99207292635649	2.37131948571246	4.27758959003537	4.40645342012542	4.34759098480327	4.02925052317834	8.13225148754823	3.23708128800167e-17	7.45670579283724e-15
Merged-chr4-139169084-2	chr4	139168984	139169184	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	11571.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	3.38447555737169	3.45799700528175	3.55140609792244	2.98931625486526	3.33850482407686	3.55996126772819	3.63522990434643	3.60026641352127	0.624489690003591	0.252345530750026	0.563645884616847
Merged-chr19-40737305-4	chr19	40737205	40737405	+	934.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 9 of 9)	intron (NM_001304721, intron 9 of 9)	77535.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	4.75069920556224	4.6759493965004	4.4540740820226	4.78984595073215	4.95402042144154	4.96108261611429	4.56915232608663	4.98916877648792	0.406587387159825	0.241259229098344	0.551836536802638
Merged-chr5-137502540-4	chr5	137502421	137502621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028753)	promoter-TSS (NM_028753)	-92.0	NM_028753	74097.0	Mm.290242	NM_028753	ENSMUSG00000029715	Pop7	0610037N12Rik|AI852017|Rpp20	processing of precursor 7, ribonuclease P family, (S. cerevisiae)	protein-coding	7.51861996523035	7.76533286818391	6.83870998307419	7.09954123830654	7.53038899611093	7.86630255680848	7.49175204703996	7.61061195720698	0.36811707397362	0.125071381182097	0.392541815827878
Merged-chr18-3890073-4	chr18	3889975	3890175	+	768.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_A|LINE|L1	-275757.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	4.35299863352006	4.57066067842715	4.25610005212519	4.13917088369699	4.73150770419205	5.08395235271119	4.62484353228995	4.35096831729729	0.868914565058825	0.0267511043501152	0.155428549901974
Merged-chr3-97628735-4	chr3	97628643	97628843	+	987.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161765)	promoter-TSS (NM_001161765)	-61.0	NM_010232	14263.0	Mm.385180	NM_010232	ENSMUSG00000028088	Fmo5	5033418D19Rik|AI195026	flavin containing monooxygenase 5	protein-coding	5.02801296143873	4.74008536050888	5.06137100009332	5.07398195075625	4.89570860949114	5.26413488540828	4.67027516125417	4.92269696398248	-0.0704153636757101	0.834358928754901	0.936829953336994
Merged-chr6-117802240-3	chr6	117802137	117802337	+	787.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38944.0	NM_001346649	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	3.50882373565904	3.5326305568243	4.42393722300457	4.26433272910075	3.09420429706837	3.43446868438107	3.43450329755645	3.24228087478035	-2.30175004580497	0.000180298004236629	0.00333682570035335
Merged-chr10-93051120-4	chr10	93051015	93051215	+	842.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347060, intron 5 of 67)	intron (NM_001347060, intron 5 of 67)	30481.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	3.72480689026473	4.20608616272137	3.94383463891343	4.0562682081932	4.05189869055991	4.01355328902304	4.02331986876139	4.03829410879971	0.0808768255516605	0.850986526956757	0.943803580645616
Merged-chr1-45825380-4	chr1	45825273	45825473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	30207.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	5.38215369633076	5.26219232198856	5.77725410745966	5.22495752160954	5.23648651879875	5.30507846762005	5.26692338486177	5.4632469419392	-0.176142300698324	0.561179204271035	0.804871737341984
Merged-chr6-120083182-4	chr6	120083077	120083277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10203.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	6.83458575733337	6.82186691288003	7.01183600518695	7.03969327690823	6.96651805728699	6.60239407632593	6.39121854018488	6.34236853961356	-0.453108703081034	0.0523471680306622	0.238327943792664
Merged-chr11-97127771-2	chr11	97127671	97127871	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12440.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	2.91421163661244	3.00052001503758	2.85430756020928	2.66049072019568	2.65672594894922	2.76050634437531	2.90340969618775	2.85286636611753	-0.292916344430529	0.645584555996078	0.850934142345746
Merged-chr11-19943990-2	chr11	19943890	19944090	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	19548.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	2.52046617995781	2.43475762206084	2.63778880232052	2.53728833436651	2.26514233150327	2.27071913271063	2.4495469014726	2.2482928960623	-1.36909627252589	0.0707815826691715	0.285242270926058
Merged-chr5-43233743-4	chr5	43233638	43233838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175937, exon 1 of 11)	exon (NM_175937, exon 1 of 11)	275.0	NM_001177379	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	7.65591992662001	7.42167019600685	7.96835053645566	8.0457046826943	7.77637275763037	7.7909829453276	8.02670449590847	7.73528189120794	0.0429042485361324	0.832034034777578	0.935710699145492
Merged-chr13-45912080-4	chr13	45911972	45912172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	52919.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	5.70887913831672	5.9788139572563	5.65921810625026	5.51361314407483	5.24315720752157	5.80842138552086	5.79850357067224	5.73039382187975	-0.110622652204693	0.70606259881084	0.881879743016467
Merged-chr2-49748738-4	chr2	49748632	49748832	+	884.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 21 of 25)	MIR|SINE|MIR	-38954.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	4.42309383570355	4.51874555419472	4.46645794234283	4.37006466544008	4.29049934224887	4.75666427795541	4.44609461260589	4.54479353863804	0.158432183657647	0.669822177622781	0.863656126023693
Merged-chr19-32215041-4	chr19	32214938	32215138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	-4025.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	7.56964209357738	6.95090438420947	7.04089891922142	7.29096091586393	7.0692276363104	7.07349134520165	6.96760782802266	7.15463214646374	-0.230257387067935	0.275776176005268	0.587720744458421
Merged-chr4-120061932-4	chr4	120061817	120062017	+	911.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-99289.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	4.55942748730398	4.85873413027042	4.28201168373515	4.93787806222373	4.53142498363496	4.81322500382355	4.65764177865005	4.47104229153952	-0.176225010113938	0.646789263481283	0.851401409677112
Merged-chr19-32789737-4	chr19	32789639	32789839	+	871.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 2 of 8)	intron (NM_008960, intron 2 of 8)	32162.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	4.22214095024858	3.88125792874167	4.08499181705871	4.61778341335645	4.0874064189965	3.87692696444224	4.24620820799182	4.17591624507314	-0.365435458735358	0.424095526618633	0.715980284164482
Merged-chr19-36768294-4	chr19	36768187	36768387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31683.0	NM_016854	53412.0	Mm.24724	NM_016854	ENSMUSG00000067279	Ppp1r3c	PTG|Ppp1r5	protein phosphatase 1, regulatory (inhibitor) subunit 3C	protein-coding	6.01846797341348	6.4033255855034	6.34826369826706	6.27272305226647	6.6512343361967	6.15078927252431	6.36862265656509	6.63300223925408	0.304465876004406	0.202449435048646	0.504928285410406
Merged-chr7-118479327-4	chr7	118479198	118479398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12677.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	7.24837006693447	7.44811127933089	7.49227684605574	7.84386991767891	7.39728603291767	7.1550385382226	7.4180640362359	7.43073368626437	-0.244549098657898	0.232673085183975	0.542304513255514
Merged-chr5-139327296-2	chr5	139327196	139327396	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1832.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	3.20007240658841	3.1189260906168	2.97771900878314	2.93359096774789	2.98616408972245	2.81349604731745	2.8412895609265	2.97624533465219	-0.631733499607667	0.297178671874602	0.609312152476157
Merged-chr12-4494363-3	chr12	4494244	4494444	+	714.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17162.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	3.53442712110795	3.96645213676545	3.8574768157645	4.39079989816943	3.35358417204974	3.65276025475387	3.46057505581883	3.64944636541695	-1.40654102291536	0.00876630831033886	0.0717792544831025
Merged-chr12-11215718-3	chr12	11215601	11215801	+	782.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6753.0	NM_019544	56184.0	Mm.117113	NM_019544	ENSMUSG00000047002	Msgn1	Msgn|pMsgn1	mesogenin 1	protein-coding	3.27980723192395	3.18851013483589	3.42262966078016	3.37656777019536	2.70401795285889	2.66962641873296	2.71742881386175	2.72329255673879	-3.22718185521419	3.35395137354108e-05	0.000798698242948412
Merged-chr18-38396951-4	chr18	38396779	38396979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22028.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	3.70072119315035	3.80424145515014	4.33539918292787	3.48595019990459	3.8318611396296	3.88025013762319	4.08210380840253	4.00962479309786	0.255419265607377	0.606262031257765	0.829357417029837
Merged-chr10-37204575-4	chr10	37204494	37204694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65668.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	6.26949791392637	6.07078561957769	6.35718962563995	6.11603296326773	5.8589508815676	6.35230927522426	5.76795801811326	5.91721191060838	-0.334843326188428	0.190039311272113	0.489127034425519
Merged-chr1-43735530-4	chr1	43735420	43735620	+	981.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024283, intron 1 of 3)	MTD|LTR|ERVL-MaLR	4918.0	NM_024283	78896.0	Mm.50109	NM_024283	ENSMUSG00000026051	1500015O10Rik	Ecrg4	RIKEN cDNA 1500015O10 gene	protein-coding	4.59961439982389	4.53236127722722	4.52211090696004	4.46473325967583	4.4614108799392	4.27765860959291	4.71984149116568	4.43589949816811	-0.0912984928741073	0.803378512632743	0.924122552203287
Merged-chr1-178337820-4	chr1	178337744	178337944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016805)	promoter-TSS (NM_016805)	-29.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	7.54779462362172	7.9100744813336	7.56761355585703	7.30876641407232	8.07289139575768	7.95621898342162	7.99269254779685	7.75783518541899	0.46633692523692	0.0174391380815935	0.116696475463923
Merged-chr1-149911277-4	chr1	149911174	149911374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 3 of 17)	intron (NM_008869, intron 3 of 17)	11165.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	6.83021666865732	6.52253187530816	6.52393298615773	7.1372965559592	6.66889635412271	6.70168814239102	7.05352617662534	6.81286069913252	0.0274041752674029	0.909508481583041	0.966320459266825
Merged-chr1-84363406-4	chr1	84363298	84363498	+	962.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78753.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	4.78407119648162	4.94818312832572	4.62836599318731	4.97397777732869	4.80274445186738	4.71911079747294	4.93241055086014	4.29680231099539	-0.285734591536969	0.433015434843709	0.722758873865112
Merged-chr8-67515982-4	chr8	67515852	67516052	+	840.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	-7902.0	NM_008674	17962.0	Mm.57193	NM_008674	ENSMUSG00000056426	Nat3	-	N-acetyltransferase 3	protein-coding	3.62460741707122	3.39457416670333	3.62512526131369	3.49044572459074	3.80312058444459	3.45573845591565	3.50582738539906	3.46130596768993	0.139705000806542	0.779824646264398	0.914179296031713
Merged-chr8-106959757-4	chr8	106959664	106959864	+	943.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009229, intron 1 of 6)	MTC|LTR|ERVL-MaLR	24014.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	5.08857188057778	5.21517195758283	4.71863379531622	4.55206556760708	5.14476149178472	5.19705676697738	5.18597329017814	4.98558754646892	0.433594412096235	0.208404298088672	0.512684369034825
Merged-chr1-138145764-4	chr1	138145640	138145840	+	932.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	29386.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	4.96207034219674	4.85537553734051	4.7090653018054	5.03218594395025	4.76536525795856	4.7597076064022	4.68735148674289	4.89212331219733	-0.264534550155619	0.424591350859799	0.716313615767572
Merged-chr1-152019301-4	chr1	152019198	152019398	+	989.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 1 of 5)	intron (NM_197990, intron 1 of 5)	71022.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	5.31689073672256	5.33757220697659	5.16405575118034	5.54239829992114	5.28224433461458	5.20260827466225	4.80797153462046	5.16053090746564	-0.421450055251612	0.176942756861845	0.472185620690969
Merged-chr1-171193817-2	chr1	171193717	171193917	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025557, intron 1 of 2)	intron (NM_025557, intron 1 of 2)	2451.0	NM_025557	66425.0	Mm.482117	NM_025557	ENSMUSG00000038370	Pcp4l1	1500036F01Rik	Purkinje cell protein 4-like 1	protein-coding	2.05081566960827	1.99677088524989	1.89428604956693	1.91808156092698	2.12703112255448	2.29579630772048	2.30847158047949	2.25533661813589	1.96981647372709	0.0136832693102713	0.0984097631843795
Merged-chr8-126591699-4	chr8	126591605	126591805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164598, exon 2 of 2)	exon (NM_001164598, exon 2 of 2)	1731.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	7.05959880747212	7.2475752776803	6.96006839064262	7.06277180054472	7.01562546029602	7.05614186690062	7.29525112575291	6.94197922483326	-0.00737391025008806	0.969846645420183	0.989113198611538
Merged-chr12-59216393-3	chr12	59216292	59216492	+	938.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033156, intron 1 of 3)	intron (NM_001033156, intron 1 of 3)	3091.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	4.37040860529916	4.33729746140255	4.64385465164784	4.65835661930206	4.80086330166005	3.90082191523294	4.21547151539594	4.18188097199974	-0.409197438424269	0.366077589670804	0.670665455220093
Merged-chr16-16555929-1	chr16	16555829	16556029	+	649.666687	f0_balb.idr	intron (NM_001301817, intron 1 of 16)	B1F|SINE|Alu	4290.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	3.57548175854087	3.39175766007197	3.52614800044616	3.41694313829831	3.35183730903583	3.35453745219218	3.29305961287842	3.3619589777086	-0.470432306809722	0.356830658772402	0.66317411451208
Merged-chr13-36314453-4	chr13	36314347	36314547	+	930.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 3 of 5)	intron (NM_001039189, intron 3 of 5)	196804.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	4.67920709810006	4.93390102221886	4.75826207814569	4.81732458953685	5.00560083651729	5.07255169276153	4.61768318635722	4.35914227357103	-0.0022088456736021	0.995211311648478	0.998265838137867
Merged-chr12-86883258-9	chr12	86883174	86883374	+	933.648132	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145836, exon 1 of 1)	exon (NM_145836, exon 1 of 1)	1540.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	3.61155694570679	4.1077659410768	3.67160255439295	3.76552898100495	3.66076514509901	3.73165244075178	3.81979528507279	4.40317444501254	0.369488979160793	0.464638136883107	0.745523090592339
Merged-chr11-97314310-2	chr11	97314211	97314411	+	778.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1405.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	3.32514704164692	3.09515658270431	3.21510347773635	2.76200987708033	3.02487081141258	3.594692237354	3.08301438494495	2.96042204332937	0.291991816927915	0.642637350478522	0.849309266102231
Merged-chr1-128103699-3	chr1	128103596	128103796	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357573)	promoter-TSS (NM_001357573)	390.0	NM_181750	226412.0	Mm.221041	NM_181750	ENSMUSG00000056211	R3hdm1	R3hdm	R3H domain containing 1	protein-coding	5.41859088434349	5.19474619494926	5.6034024422857	5.28211497023082	5.12978864073231	5.53592707188365	5.47390613801567	5.41573573889877	0.024005347495417	0.935368326286248	0.976553886506881
Merged-chr11-55204307-4	chr11	55204140	55204340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153139)	promoter-TSS (NM_153139)	-100.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	5.60423090672241	5.67928237216992	5.77425758421708	5.29081337026466	5.6910662277772	5.49350651687742	5.49743645662022	5.40616107493946	-0.0822043057018898	0.774553921416031	0.911896677859441
Merged-chr16-38713441-3	chr16	38713295	38713495	+	682.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020260)	promoter-TSS (NM_020260)	-360.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	4.19012802061169	4.05933375662631	3.88507683061477	3.93491913052075	4.19207100424238	4.36269045907304	4.48815970838452	4.23273365034569	0.768123688249566	0.0562768217458211	0.248413779489107
Merged-chr5-65863602-4	chr5	65863489	65863689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081105)	promoter-TSS (NM_001081105)	20.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	5.85654919747219	5.65552112389413	5.32251237791922	5.4331811117142	5.30464599305624	5.46742168463543	5.44460426480788	5.49604849979554	-0.260710917462905	0.364498988296649	0.669279814395716
Merged-chr9-22457643-3	chr9	22457587	22457787	+	788.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018739, intron 2 of 5)	intron (NM_018739, intron 2 of 5)	10669.0	NM_018739	55934.0	Mm.38235	NM_018739	ENSMUSG00000032239	Rp9	PAP-1|Rp9h	retinitis pigmentosa 9 (human)	protein-coding	3.30079980489423	3.13545440830307	3.47520377419986	3.23817496786039	3.17923041681757	3.6984978202114	3.65905397616268	3.57731088244626	0.85002082160086	0.114150504658257	0.373757706015458
Merged-chr16-38395623-4	chr16	38395524	38395724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_134102)	TTS (NM_134102)	33434.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	6.21098269158935	5.77626167364065	5.82640022346956	5.9050271073051	5.66835185926373	5.95341314698463	5.74863473626249	5.67109127588637	-0.286583487399409	0.270446781810003	0.582296242549812
Merged-chr5-113226703-3	chr5	113226594	113226794	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033428)	promoter-TSS (NM_001033428)	-215.0	NM_001033428	333048.0	Mm.332586	NM_001033428	ENSMUSG00000066964	Tmem211	Gm854	transmembrane protein 211	protein-coding	3.28361197937075	3.04939019338656	2.98891620131531	2.75155145954369	2.47799944404138	2.55596563740004	2.5228839826773	2.52829038287653	-2.87216103494241	0.000413765638916327	0.00661086967731206
Merged-chr13-44407581-3	chr13	44407472	44407672	+	961.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie4a|DNA|hAT-Charlie	-32155.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	4.29390177999036	4.03478148640162	3.98031840149198	4.22402275711529	3.66102652555829	4.29541260867779	3.85912974942974	4.16663887267949	-0.349392397846517	0.442590814447457	0.729307611388915
Merged-chr4-6365939-4	chr4	6365832	6366032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	CpG	252.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	7.90848533049211	8.18814774429139	7.90980066825001	7.67706423102133	8.43254762262013	8.38702379693773	8.13534031302339	7.86715239988532	0.383155703736067	0.0560248955885891	0.247750748204534
Merged-chr7-127842510-4	chr7	127842425	127842625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009294, exon 3 of 11)	exon (NM_009294, exon 3 of 11)	717.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	6.28444707549219	6.6925363514045	6.38186047539488	6.31305633668984	6.54309797550914	6.57743250921171	6.91789750389732	6.79860614536389	0.418996261957358	0.0649005064640742	0.270957425632374
Merged-chr1-135136664-3	chr1	135136561	135136761	+	745.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177081, intron 5 of 9)	intron (NM_177081, intron 5 of 9)	3352.0	NM_001356382	320139.0	Mm.258388	NM_177081	ENSMUSG00000031506	Ptpn7	BPTP-4|C920001D21Rik|HEPTP|LC-PTP|LPTP	protein tyrosine phosphatase, non-receptor type 7	protein-coding	3.71904867569013	2.99088060165997	3.27951717987825	3.1769207619202	3.82561911852096	3.74293166438203	3.65565285348525	3.34151864374211	1.12275676636389	0.0497011853974152	0.230826557092361
Merged-chr5-113621229-4	chr5	113621112	113621312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	L4_B_Mam|LINE|RTE-X	22391.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	5.96786292425488	6.3637748271559	6.3240369586379	6.29178229415124	5.80099398385491	6.00214947026433	5.84449130802023	6.13483945301286	-0.475814292907867	0.0522865336315393	0.238128042572099
Merged-chr5-96979547-2	chr5	96979447	96979647	+	895.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18142.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	2.67335422035262	2.77914198234779	2.81166644119585	2.76676816983097	2.71286947656692	3.2697438687845	2.86520506006332	2.93517553569829	0.868705998381576	0.169335304895745	0.461840664693626
Merged-chr5-96162240-1	chr5	96162140	96162340	+	1000.0	f0_balb.idr	promoter-TSS (NM_178854)	promoter-TSS (NM_178854)	-250.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	4.9821641538005	5.31930702165803	5.53716894026422	4.99599581398026	5.09509483884663	5.04659144858125	4.99491216153972	5.15048099362798	-0.270948592503469	0.401152314807044	0.698869974053897
Merged-chr2-93346387-8	chr2	93346185	93346385	+	918.2802119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11798.0	NM_183180	241556.0	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding	3.95263154570052	3.79278845420911	3.64818466547805	4.11731897216957	3.64095856231158	3.92955920691426	3.7940447685884	3.58779396128706	-0.474095014190472	0.320005861281823	0.631836260753922
Merged-chr13-20039833-3	chr13	20039735	20039935	+	817.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50672.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.97433518527099	4.13137057555919	3.9285223262915	4.14205704376185	3.56218957882452	3.95141373896494	3.53433049248298	3.48032101364266	-1.22995097076131	0.0104262678466034	0.0813918972420906
Merged-chr4-137610475-4	chr4	137610366	137610566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355588, intron 6 of 26)	intron (NM_001355588, intron 6 of 26)	16294.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	6.39038124100114	6.36136641225003	6.33972092710954	6.43976866576235	6.35016618484091	6.24186174674161	5.7951091990564	5.92198657548052	-0.422375084244926	0.0844162132044004	0.316131232844722
Merged-chr13-44538394-4	chr13	44538294	44538494	+	984.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98667.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	5.4459077915506	6.1680361627887	5.58710449220509	5.27757092094833	5.67629735669031	5.81373072691472	5.58485628791695	5.02816176284656	-0.17560054552581	0.613165150805683	0.833119630742334
Merged-chr4-149690216-4	chr4	149690131	149690331	+	984.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 1 of 23)	intron (NM_001029837, intron 1 of 23)	8477.0	NM_001164050	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	5.2293174469442	5.62415274840008	5.09902195403876	4.43226700343588	5.56107029378162	5.90870800977121	5.14027380350934	4.32601996763452	0.31121379821695	0.678991484851341	0.868275212896295
Merged-chr11-82764309-4	chr11	82764208	82764408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025884)	promoter-TSS (NM_025884)	13.0	NM_009839	12467.0	Mm.4126	NM_009839	ENSMUSG00000020698	Cct6b	CCT-zeta-2|CCTzeta-2|Cctz-2|TCP-1-zeta-2	chaperonin containing Tcp1, subunit 6b (zeta)	protein-coding	6.92711410812864	7.06623781936312	6.61318068967695	7.0528148901729	7.20379413374883	7.15703590262395	7.14404593939037	6.96261745235029	0.254409921112121	0.211101829570893	0.515749988419294
Merged-chr1-91250707-2	chr1	91250607	91250807	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355764, exon 1 of 11)	5' UTR (NM_001355764, exon 1 of 11)	141.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	5.04400789498458	5.57115166311699	5.80877087707764	4.87822744851014	5.39368531523194	5.67136597167866	5.49592980721708	5.57218451969663	0.288036912673497	0.398526566138277	0.696793179038619
Merged-chr1-135688141-4	chr1	135688043	135688243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-31920.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	5.82424602218689	5.4442541282146	5.3005839101012	5.80490127473701	5.29802678170924	5.34312619153892	5.61217924047779	5.53330575571711	-0.302469760968008	0.305134302542454	0.617617998085348
Merged-chr9-63712828-4	chr9	63712722	63712922	+	975.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	45172.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	4.50397488328627	4.61586317522058	4.86492958651721	4.71409920973527	4.75619063966263	4.81181549189062	4.77033688010077	5.16894252512474	0.41576973337924	0.228413506509221	0.537286714307472
Merged-chr6-134921610-4	chr6	134921521	134921721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009875, intron 1 of 2)	intron (NM_009875, intron 1 of 2)	1220.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	5.90659332589054	5.755352358133	5.83424531462775	5.54958966697455	6.38480981509619	6.10835890670216	6.42446587462007	6.4683017565928	0.947842549818086	9.26565831585992e-05	0.00190669986811047
Merged-chr6-81958229-3	chr6	81958126	81958326	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177884, exon 17 of 17)	3' UTR (NM_177884, exon 17 of 17)	7723.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	5.32190895906882	5.65564322504842	5.74972606306562	6.32199147748232	3.93241785875682	4.06413080498936	4.4131940107654	4.3184182306616	-3.52525000330749	8.13041899260231e-16	1.49538783843525e-13
Merged-chr6-40585856-4	chr6	40585768	40585968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021364)	promoter-TSS (NM_021364)	-63.0	NM_001038604	23845.0	Mm.103765	NM_021364	ENSMUSG00000029915	Clec5a	Clecsf5|Ly100|MDL-1|Mdl1	C-type lectin domain family 5, member a	protein-coding	5.01821554759772	5.28612171521897	5.3524286277808	5.07160663018378	4.99842418544135	5.15873176403047	5.06172704088163	4.61281085366732	-0.403934876064669	0.217599924634475	0.524573089329991
Merged-chr12-59131826-1	chr12	59131726	59131926	+	1000.0	f0_balb.idr	intron (NM_001165253, intron 1 of 22)	intron (NM_001165253, intron 1 of 22)	373.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	5.63151598332478	5.32090752665793	5.4159080152262	5.53244647753291	5.39430011081922	5.78041755064481	5.23333147164971	5.70092287098276	0.0974322440499613	0.737425061231764	0.896392006995728
Merged-chr17-34123663-4	chr17	34123560	34123760	+	990.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010386, intron 1 of 5)	intron (NM_010386, intron 1 of 5)	828.0	NM_010386	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	5.59538747813115	5.60030030946339	5.39677776804021	5.46878965149895	5.99218789084976	5.74431418420345	5.59406855613767	5.36184228643381	0.322147989903077	0.25691162920651	0.568647554151895
Merged-chr19-34562670-4	chr19	34562559	34562759	+	679.016663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355262, intron 1 of 2)	intron (NM_001355262, intron 1 of 2)	11571.0	NM_001355262	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	3.86616645540061	3.89679717127264	3.91805599098277	3.97405501337739	4.13823326719705	4.08936993954231	3.85122641283283	4.01258648214177	0.304599955888229	0.471683409471863	0.750014008853512
Merged-chr1-170996995-4	chr1	170996904	170997104	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20933.0	NM_001077189	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	4.88811995310966	4.7371341123033	4.8155141494662	4.67279024052988	4.94769487699369	5.09555587904478	4.7928767585842	5.14149817952003	0.462480900109162	0.153100309331972	0.437555330104179
Merged-chr10-96331357-4	chr10	96331270	96331470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105163.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	5.35493792613042	5.61804067197971	5.23183817181425	5.33629221945105	5.35578660182866	5.46991285924167	5.35824516585566	5.22826315723459	-0.068449828751873	0.811016206175352	0.926868590231843
Merged-chr4-24898055-4	chr4	24897988	24898188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026742)	promoter-TSS (NM_026742)	5.0	NM_026742	68493.0	Mm.204831	NM_026742	ENSMUSG00000028261	Ndufaf4	1110007M04Rik|3000003G13Rik|AW214064	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	protein-coding	7.99160361741094	7.97596969296829	7.81113716674991	7.9648825373247	7.98709556977584	8.02717161094414	8.05820740888788	7.90364094261643	0.0707931412434631	0.653912956567893	0.855289789333812
Merged-chr7-102223071-4	chr7	102223000	102223200	+	980.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145583)	promoter-TSS (NM_145583)	72.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	4.9647263601045	4.9165860086803	5.09397087059752	4.76689259362992	4.90402742464866	4.92021496641127	4.97454178002145	4.65892235643375	-0.112559719868543	0.732330332227316	0.893963778565797
Merged-chr6-54180018-4	chr6	54179905	54180105	+	878.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 2 of 12)	intron (NM_001163640, intron 2 of 12)	-84853.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	4.30970481372884	4.01255474595491	4.18204042672796	4.60435982995247	4.0907202977804	3.94220515200936	4.16363253641251	3.93247402369783	-0.697418148978922	0.110274321787858	0.366691625977182
Merged-chr4-72201051-4	chr4	72200964	72201164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285529)	promoter-TSS (NM_001285529)	-171.0	NM_001285530	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	9.60547313593128	9.72677515316971	9.96213068241317	9.82320001733999	9.73429694928975	9.83694885971409	10.1173548405517	9.69884366036712	0.0862417825984352	0.591544743097103	0.821652127405771
Merged-chr18-4346456-4	chr18	4346371	4346571	+	816.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	6482.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	3.54254519889533	2.84107610323415	3.40065163359753	3.04637125429093	2.97666543469774	3.29569678550049	3.10928462181011	3.11902592707798	-0.395535390873932	0.52348822993415	0.782507755382099
Merged-chr16-21690573-2	chr16	21690473	21690673	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	intron (NM_001001881, intron 1 of 1)	4092.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	3.41793386577131	3.19237179757563	3.20487455303699	3.06426419685625	3.23488117722388	3.12683816457536	3.13429967203148	3.20320352988826	-0.147924068270212	0.789291628118922	0.918378046795982
Merged-chr12-17690517-4	chr12	17690563	17690763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361645)	promoter-TSS (NM_001361645)	-146.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	7.4760031330831	7.65427968580269	7.9293427766972	7.32119489224983	7.19951970985408	7.52623988561829	7.40227077972192	7.32269351647802	-0.32437034574768	0.116099192167624	0.376999288289201
Merged-chr11-83593024-4	chr11	83592916	83593116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009139)	promoter-TSS (NM_009139)	71.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	6.35508101517555	6.08528486620669	6.01703379702913	6.23250494995457	5.92171040363264	5.9315229947912	6.12849528168486	5.66702014845871	-0.404663719832362	0.103143734868154	0.352778237671439
Merged-chr11-85003669-4	chr11	85003559	85003759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029934, intron 29 of 33)	intron (NM_001029934, intron 29 of 33)	45905.0	NM_007607	12351.0	Mm.1641	NM_007607	ENSMUSG00000000805	Car4	AW456718|Ca4	carbonic anhydrase 4	protein-coding	7.69660518552543	7.79071129337961	7.55328810159167	7.61848286751737	7.54100766800096	7.42645971495312	7.45173194336579	7.69265775041191	-0.17667197326842	0.310160772988557	0.622306169256751
Merged-chr4-54195920-2	chr4	54195822	54196022	+	794.666626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	369877.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	3.39887459705767	4.03417720740466	3.85015604027424	3.9720332970899	3.00468609216322	3.0978321760122	3.05347893954846	3.27242043443017	-2.86582094790176	7.99797799520859e-06	0.000225728816701409
Merged-chr17-53684148-4	chr17	53684014	53684214	+	830.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028232, intron 4 of 8)	intron (NM_028232, intron 4 of 8)	5201.0	NM_028232	72415.0	Mm.153202	NM_028232	ENSMUSG00000023940	Sgo1	3300001M08Rik|C81037|Sgol1	shugoshin 1	protein-coding	3.56340643367576	3.9396325976567	4.15350246091425	4.13568253628923	4.31060196654034	3.95538196021573	4.57136376100955	4.83534043469425	1.17166181671263	0.0161074221217851	0.110156629439521
Merged-chr17-24478876-4	chr17	24478797	24478997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252463, intron 1 of 8)	CpG	181.0	NM_001252464	56716.0	Mm.289516	NM_019988	ENSMUSG00000024142	Mlst8	0610033N12Rik|AA409454|AI505104|AI851821|Gbl	MTOR associated protein, LST8 homolog (S. cerevisiae)	protein-coding	6.92087904317818	7.07099652650679	7.08952344615801	6.65122623798611	6.62189074962634	6.66054971569554	6.48465302888388	7.0505125478912	-0.303171024485963	0.189353642290295	0.488240753999997
Merged-chr17-65886313-5	chr17	65886164	65886364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009067)	promoter-TSS (NM_009067)	-509.0	NM_009067	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	5.14308728169695	4.94269658258201	5.68291776657163	5.48870965167662	5.20628174111465	5.06446785882129	5.33309704281119	5.17360002333483	-0.276640866483632	0.395244901036013	0.694150374158478
Merged-chr18-79936877-3	chr18	79936777	79936977	+	941.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110018.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	4.20402995321974	4.14367513653486	4.42281420731395	4.71367080473761	2.95779299309169	3.30957556013071	3.25560516909381	3.18440705040814	-5.7955628605281	6.87683311360983e-09	3.7856620587288e-07
Merged-chr10-24930365-4	chr10	24930280	24930480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2910.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	7.05092949304596	6.67177895103452	7.84428046682051	7.71569009285803	6.96408651055215	7.25526319962878	7.1932881045036	7.48259494891262	-0.238476524492116	0.397003433672475	0.695569405558829
Merged-chr9-123270177-3	chr9	123270091	123270291	+	621.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9402.0	NM_001002267	72309.0	Mm.8569	NM_001002267	ENSMUSG00000054871	Tmem158	2310037P21Rik|Ris1	transmembrane protein 158	protein-coding	2.80724216303557	2.81651417981587	2.9810470795925	2.5542380342643	2.76008696147336	2.55918974884697	2.73491795857279	2.92414729761968	-0.187186450806918	0.778996954542982	0.913809930096951
Merged-chr2-50741552-3	chr2	50741461	50741661	+	613.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-168123.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	3.42690896495353	3.30032584072788	3.31636980773416	3.51162358473835	3.06940950083151	3.30637248286212	3.30404933623667	3.52736671724667	-0.328238493813851	0.545571206412043	0.795947244031089
Merged-chr15-97858629-3	chr15	97858561	97858761	+	993.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009504, intron 9 of 9)	intron (NM_009504, intron 9 of 9)	-14159.0	NM_001204278	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	3.33455998559401	3.32799389653828	3.44984618428915	3.54424491963094	3.66975978934198	3.50687288647845	3.48966147779254	3.27198583395012	0.245940700022216	0.633926454727043	0.844935157053758
Merged-chr16-91044547-4	chr16	91044434	91044634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026110)	promoter-TSS (NM_026110)	-155.0	NR_152264	67367.0	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	7.63249647838849	7.48857837199128	7.25547899175642	7.32600628960282	7.70227265373758	7.58210460012354	7.60468384958087	7.70168981104799	0.294731516712607	0.0986111258401031	0.344171880267368
Merged-chr2-46366044-4	chr2	46365939	46366139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	669434.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	6.49926264880086	6.17663545693978	6.63383112442588	6.29259674033857	6.34431221367105	6.25338424101442	6.16952189140148	5.72129903605154	-0.383816826958706	0.13654572516776	0.411042630338623
Merged-chr11-87448286-4	chr11	87448206	87448406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	CpG	20715.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	6.81311580612715	6.30810775857923	6.05496085956225	5.77903986983084	6.57877612319018	6.30126865063307	6.93338422031636	6.39291216997431	0.427631516430074	0.151880931836791	0.435653147177552
Merged-chr11-53300572-4	chr11	53300486	53300686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008300)	promoter-TSS (NM_008300)	-107.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	8.4171798029006	8.45978254858318	8.20796617602788	7.99254685222338	8.52712955850804	8.46182064916647	8.28424073170411	8.23237153050068	0.137460989973574	0.445033928618846	0.731198136541277
Merged-chr19-40640048-4	chr19	40639958	40640158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-19712.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	6.16138782364193	5.85149924241234	6.02149218470803	5.74068805148586	6.07666452729205	6.37373037696242	5.94757785756626	5.80931912496953	0.200956345052382	0.444156586699359	0.730574496387276
Merged-chr13-101805854-4	chr13	101805749	101805949	+	911.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37632.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.48104600354805	4.51787302633689	4.60796088593028	4.7113357900821	5.03257902023808	4.56628903400704	5.14412391980232	4.13841556317661	0.43098863722873	0.30499767049245	0.617499479135937
Merged-chr9-64100666-4	chr9	64100566	64100766	+	886.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16481.0	NM_145835	235435.0	Mm.436581	NM_145835	ENSMUSG00000032401	Lctl	E130104I05Rik|KLPH	lactase-like	protein-coding	4.34847687823352	4.20099458965421	4.07804569066307	4.06233613745985	4.40458500725497	4.15073937330251	4.40716088503071	4.07567679360186	0.263271172944062	0.513471079836513	0.776484692508512
Merged-chr11-52097202-4	chr11	52097101	52097301	+	951.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1623.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	5.13375987465312	5.068611477507	4.77376305031772	5.03806077406192	4.77219486642664	4.55974671833089	4.7512251853466	4.37478220387327	-0.785129394171741	0.0248294328247544	0.147745711338672
Merged-chr12-87408085-4	chr12	87407975	87408175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19720.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	6.14947124920346	5.7222684620724	6.20735186011261	6.19650910991971	5.89098584464579	5.81095630168382	6.49776288062571	5.65593961795579	-0.12308882691448	0.674958344018652	0.86644892455821
Merged-chr18-80483733-4	chr18	80483640	80483840	+	984.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14073.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	5.54961778605008	5.72749839769703	5.21783825581324	5.8697410163703	6.4897043431756	5.78608837570027	6.04245324645109	5.85803904060601	0.732391211672069	0.0169674568382311	0.114422227407717
Merged-chr12-77238804-4	chr12	77238731	77238931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045554)	promoter-TSS (NR_045554)	92.0	NR_045554	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	7.04440386281273	6.80546482810376	6.99664908119171	7.20764597022396	6.81092959317237	6.84844717731038	7.07990024138622	7.08777825207431	-0.0993558067066144	0.628873774533235	0.841823003934767
Merged-chr2-27676927-4	chr2	27676823	27677023	+	974.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011305)	promoter-TSS (NM_011305)	-278.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.26818432058112	4.69075625975108	4.72217843918704	5.03370101063998	4.91787709854464	4.77337428376334	4.73954067586113	4.7191198159102	-0.319034197085893	0.360342413701815	0.665793074685122
Merged-chr8-71613644-4	chr8	71613554	71613754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146211, intron 3 of 11)	intron (NM_146211, intron 3 of 11)	2630.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	7.54995725917734	7.65414586683265	7.51483379826116	7.7678678632306	7.65644743433668	7.08878216697795	7.6004383349166	7.59009506724316	-0.161228646056985	0.412772954034958	0.707787832411092
Merged-chr10-59310318-3	chr10	59310204	59310404	+	892.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12992.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	3.23576105768402	3.07585234110288	3.23615850506054	3.52752850606791	3.04853166048457	3.46726052003165	3.49525688011229	3.45808211644305	0.298286543962372	0.604485468292027	0.828485859893348
Merged-chr11-79920074-4	chr11	79919968	79920168	+	870.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42319.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	3.72927016587229	3.49242343085619	3.72977672722337	3.6619660218896	4.12807937700396	4.00875503304495	3.91766699439544	4.108848301884	1.11055681796238	0.0115519101662169	0.0874486125916037
Merged-chr1-165682642-4	chr1	165682551	165682751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	25443.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	5.99157501312414	5.90416877342571	6.44124310236189	6.63032331993536	5.84881963235451	5.72203238534252	6.3764708024756	5.84607443880038	-0.486742965037167	0.101478810012689	0.349519027286036
Merged-chr6-35134722-3	chr6	35134590	35134790	+	863.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164411)	promoter-TSS (NM_001164411)	-953.0	NM_001164414	53621.0	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding	3.44336995651068	3.31659123397625	3.59365228151172	3.32951634524173	3.49235866852889	3.11610681787161	3.26249666579448	3.3878525513311	-0.315404426307683	0.558816429912055	0.803387211614322
Merged-chr6-89448996-4	chr6	89448902	89449102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-86389.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	6.63406507395014	6.33497734231861	6.775599369853	6.93778246565991	6.35275630783992	6.17004450547847	6.42702848167926	6.19053528050484	-0.596635739303759	0.0124298514652681	0.0920745548388303
Merged-chr1-16689572-4	chr1	16689432	16689632	+	878.104126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159711, intron 1 of 4)	B1F|SINE|Alu	1076.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	4.23508904015906	4.20788955443971	4.32044729938882	3.95700833675116	3.91091861079622	4.31773039504664	4.25924436257961	4.14249355915825	-0.0405917788389892	0.923008870306705	0.971488790221253
Merged-chr17-62516341-4	chr17	62516239	62516439	+	944.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	364978.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	4.77903718862032	5.3775798559008	5.30163656954354	4.978752101506	4.78890452066224	4.99576319810253	4.63198208003519	4.89209646975338	-0.585627010635065	0.0899372999875858	0.327456185436444
Merged-chr13-23438100-4	chr13	23437961	23438161	+	989.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7044.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	5.33013904568049	5.61309240878958	5.57310013713094	5.54515996890976	5.15314869512454	5.24635931677512	4.93132006667182	5.1359091841489	-0.728892358116772	0.0124703504172673	0.0922593360722034
Merged-chr14-118090121-3	chr14	118090019	118090219	+	927.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37873.0	NM_010024	13190.0	Mm.19987	NM_010024	ENSMUSG00000022129	Dct	DT|TRP-2|TRP2|Tyrp-2|Tyrp2|slaty|slt	dopachrome tautomerase	protein-coding	3.84237755330055	3.69437839167839	4.31114676518689	3.8174877129069	3.69756208925339	3.46873637399979	3.82681724477283	4.19695565583641	-0.306548866918005	0.549034046984368	0.797805237578026
Merged-chr10-17527545-3	chr10	17527452	17527652	+	967.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-195676.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	4.53954454019865	4.30097689749334	4.19450649571422	4.06354307141035	3.67873240382705	4.2763893439202	3.98733541377636	3.77987871159625	-0.889202672919185	0.0529575535309984	0.240032202163967
Merged-chr15-81077759-4	chr15	81077674	81077874	+	899.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	B3A|SINE|B2	27273.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	3.89631344825933	3.92587941186506	3.72702835467269	3.71415490482261	4.46626434724548	4.12333681041537	4.28325110633793	3.99669427596287	1.13242103330664	0.00799316933835644	0.0671480939849962
Merged-chr6-86480549-6	chr6	86480469	86480669	+	978.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131125, intron 1 of 4)	intron (NR_131125, intron 1 of 4)	261.0	NR_131125	320486.0	Mm.391625	NR_131125	ENSMUSG00000085589	A430078I02Rik	T25621	RIKEN cDNA A430078I02 gene	ncRNA	4.20323752366508	4.56628589494822	4.84672231561472	4.40820942456498	4.65676553815994	4.65697016864369	4.23690281966026	4.48115369880966	0.00366652405812631	0.992584530100723	0.997258162727074
Merged-chr12-36039598-4	chr12	36039503	36039703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	2875.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	7.71495726759626	7.72363204780001	7.74052640032757	8.03129126765823	7.72000054537252	7.92585331274585	7.65397747798442	7.64390755423909	-0.105794522074658	0.556252254976953	0.801851083590197
Merged-chr16-38198396-4	chr16	38198303	38198503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 7 of 11)	MTC|LTR|ERVL-MaLR	96421.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	5.19004021708678	5.65970691805087	5.41738870943681	5.57713549497658	5.74879826529396	6.07506528050897	5.41936915697896	4.95669467737674	0.232405593724244	0.500550497630804	0.768850577358824
Merged-chr2-165884757-4	chr2	165884656	165884856	+	981.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252584)	promoter-TSS (NM_001252584)	82.0	NM_001252584	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	4.78597233985489	5.29340390386773	5.24391385843747	4.91576900932982	5.69895015536215	5.59776552442607	5.24936955942648	5.84207856540401	0.974363630423471	0.00188053207060687	0.0222942025739051
Merged-chr4-55349830-4	chr4	55349734	55349934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009011)	promoter-TSS (NM_009011)	-208.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	9.24671937482055	9.33644411783907	9.43335105670634	9.22695872183478	9.25831082946611	9.47360767351025	9.42120057142294	9.23643595941597	0.0470627601000757	0.743773179494564	0.899073282101141
Merged-chr11-26586756-4	chr11	26586645	26586845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	7175.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	6.24478747186931	6.07481115120076	6.39491640704719	6.7904581017034	6.43823991285127	6.44204510557421	6.37954670768632	6.33654106808952	-0.0376623201351254	0.881794156775028	0.955461574417952
Merged-chr11-4160314-4	chr11	4160243	4160443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164620)	promoter-TSS (NM_001164620)	-11.0	NM_026175	67465.0	Mm.156914	NM_026175	ENSMUSG00000002129	Sf3a1	1200014H24Rik|5930416L09Rik|AI159724	splicing factor 3a, subunit 1	protein-coding	7.46272437242301	7.23926650108471	6.78961534401779	7.09956822555097	7.39316963015425	7.49554057351134	7.48929401193987	7.32374267300389	0.347889298890009	0.0887277744947823	0.325094632364251
Merged-chr17-25727578-4	chr17	25727504	25727704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145409)	promoter-TSS (NM_145409)	-113.0	NM_028009	106707.0	Mm.24603	NM_028009	ENSMUSG00000041199	Rpusd1	2310051D06Rik|AU019540|Rlucl	RNA pseudouridylate synthase domain containing 1	protein-coding	8.86411113642809	9.1324321816518	8.8419359041387	8.82154257658016	8.87926329360146	9.115358923891	8.83729284520729	8.82043750050886	-0.00427779817211656	0.978509802080273	0.992431461005174
Merged-chr6-134567048-6	chr6	134566945	134567145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008514)	promoter-TSS (NM_008514)	-132.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	5.72230509701773	5.68669196921008	6.36961697444784	5.39147679710743	5.77340356057072	5.6846595654673	5.53638614952886	5.53203303211618	-0.317121591120637	0.319252659858529	0.631106068131706
Merged-chr16-18406085-3	chr16	18405981	18406181	+	779.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007744)	TTS (NM_007744)	7413.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	3.15017660781627	3.10023893717785	3.26663953759101	3.45752210175397	2.93370458817429	3.26121980397283	3.25390278820084	3.20823537338851	-0.365960876132733	0.525434981620775	0.783252235625498
Merged-chr14-50838659-3	chr14	50838547	50838747	+	996.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 34 of 54)	intron (NM_009351, intron 34 of 54)	30731.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	5.13797939066723	4.9079653695887	5.10485378061794	5.44817876634267	5.49438363280186	5.17448494644573	5.35531511704081	5.32196789217361	0.295665222444338	0.347734740397575	0.655579577680152
Merged-chr2-170401634-4	chr2	170401544	170401744	+	826.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029815, intron 4 of 12)	intron (NM_029815, intron 4 of 12)	26201.0	NM_001164369	76960.0	Mm.240850	NM_029815	ENSMUSG00000013523	Bcas1	2210416M21Rik|9030223A09Rik|AI841227|NABC1	breast carcinoma amplified sequence 1	protein-coding	4.0125807702443	4.08168285956666	3.6936086175684	3.89668927250495	4.02713218921396	4.18405850332159	3.55580031037472	4.26606709250152	0.284049146655592	0.547840235334656	0.797066990585641
Merged-chr1-191277850-4	chr1	191277696	191277896	+	996.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40322.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	4.8709868416632	4.55796771195314	4.61608365188326	4.43379585929888	4.82343345576603	4.70762554834798	4.51202254885411	4.8006414196532	0.229304530973569	0.520049650144118	0.780488058121568
Merged-chr12-21129628-3	chr12	21129543	21129743	+	559.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004364, intron 1 of 26)	intron (NM_001004364, intron 1 of 26)	17887.0	NM_001135192	211914.0	Mm.358946	NM_001004364	ENSMUSG00000052632	Asap2	6530401G17Rik|Ddef2|Gm1523|Gm592|PAG3|PAP	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding	3.03746209656767	2.96711902990585	2.98340429223295	2.98372240074668	2.67105498216357	2.62267968165239	2.66229140236144	2.80297546884122	-1.47947793270618	0.0240891969195489	0.144842452064248
Merged-chr6-125334584-4	chr6	125334483	125334683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011324, intron 3 of 11)	L1MB7|LINE|L1	13243.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	6.76683088787459	6.91991921309145	6.67953142284694	6.62901270967146	6.75589387699358	6.77750971698054	6.76167185934477	6.76321240818589	0.0235183741909352	0.90646170791073	0.965349101655937
Merged-chr9-16312245-4	chr9	16312172	16312372	+	856.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	65959.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	4.41711577878039	4.11375045522918	4.4569683287534	4.74315801553276	3.89970163331547	4.12368051153794	3.86953013137513	4.45401063423419	-0.883514995001558	0.0482484271197424	0.226698513304321
Merged-chr6-83268380-4	chr6	83268277	83268477	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001166067, exon 10 of 25)	exon (NM_001166067, exon 10 of 25)	31002.0	NM_001166067	232156.0	Mm.333189	NM_001166067	ENSMUSG00000068323	Slc4a5	C330006M16|C330016K18Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 5	protein-coding	4.92468200780002	5.22258407621462	5.55079832972412	5.07360639169126	5.02879714864423	4.62842110488561	4.82687180178617	4.95843129144432	-0.637447502022631	0.0633948855162237	0.26722637428398
Merged-chr17-83253286-4	chr17	83253199	83253399	+	885.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38016.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	4.07455406155758	3.74500043255282	4.03295861962761	3.84988932264634	3.93955286654241	3.68326467199703	3.67251080639097	3.89342577072519	-0.334079809561905	0.46536022432503	0.745811792142008
Merged-chr6-43623636-3	chr6	43623535	43623735	+	955.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 2 of 8)	Lx7|LINE|L1	42643.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	4.22044064113202	4.54366756186092	4.46897198577718	4.7826086378821	3.81064782865338	4.09559520754664	3.84104481394069	3.96834636172454	-1.56942753507921	0.000294898569897639	0.00500133078550014
Merged-chr4-148114931-4	chr4	148114815	148115015	+	899.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027426, intron 2 of 6)	intron (NM_027426, intron 2 of 6)	15783.0	NM_027426	70433.0	Mm.275288	NM_027426	ENSMUSG00000029005	Draxin	2610109H07Rik|neucrin	dorsal inhibitory axon guidance protein	protein-coding	3.87343474455434	4.06243175437125	4.23423650851483	4.33716998827999	4.37807735153156	4.31433648553438	4.38197782846493	4.31840756523994	0.474577038314952	0.243715583079882	0.554713292984908
Merged-chr10-40448187-3	chr10	40448084	40448284	+	760.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291817, intron 4 of 11)	intron (NM_001291817, intron 4 of 11)	98876.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	3.29178647418162	2.96936296588226	2.87226285467021	3.17481183379309	3.00499890971623	3.1156687892484	3.11691825848082	3.23818466414042	0.108617972190677	0.852334857720442	0.944430754968762
Merged-chr15-64059899-4	chr15	64059795	64059995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360038)	promoter-TSS (NM_001360038)	-131.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	6.56357997462392	6.57249725929082	6.49729412312287	6.63807472394104	6.78264021518825	6.72471393647889	6.84855504405385	6.92823414658766	0.353361076972889	0.0759431881870513	0.297746467069617
Merged-chr17-34455886-4	chr17	34455783	34455983	+	844.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163855, intron 22 of 23)	intron (NM_001163855, intron 22 of 23)	20054.0	NM_030746	632126.0	Mm.484958	NM_030746	ENSMUSG00000058435	Btnl4	Btn3a3|EG632126|NG11	butyrophilin-like 4	protein-coding	3.8308492950842	3.99377973839183	4.03546032684034	3.62344749428475	4.33418688152421	3.89609545983738	4.10791390968302	4.16708588785433	0.745791319421098	0.0910780352437357	0.329796834093926
Merged-chr1-37474250-4	chr1	37474135	37474335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 5 of 15)	intron (NM_173870, intron 5 of 15)	14370.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	5.63205124746233	5.83413727048314	5.85783086077116	5.80895875786003	5.92292415309011	5.63631361272512	5.80509262255072	5.96306466424315	0.0893559414501674	0.722870325634378	0.88928524667289
Merged-chr17-22431855-3	chr17	22431747	22431947	+	910.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198003, intron 2 of 6)	intron (NM_198003, intron 2 of 6)	7645.0	NM_001331198	74149.0	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	3.67458221919299	3.62884833866401	3.50386565840146	3.61253917719052	3.46839149063545	3.73910419299623	3.76172850939236	4.11890915769862	0.544306129655406	0.266820424954732	0.57842963999018
Merged-chr12-51348223-4	chr12	51348111	51348311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167963)	promoter-TSS (NM_001167963)	-19.0	NM_001167964	217558.0	Mm.253264	NM_001015099	ENSMUSG00000035293	G2e3	6030408C04Rik|9030416F18|AW046379|D930034K21Rik|mKIAA1333	G2/M-phase specific E3 ubiquitin ligase	protein-coding	7.70079141607958	7.42731406321744	7.88664401386728	8.17042428253035	7.29090644344567	7.26679015966168	7.41010781813687	7.22988854303203	-0.706233453031682	0.00085096748977906	0.0118210411699812
Merged-chr14-75283842-2	chr14	75283742	75283942	+	983.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026083)	promoter-TSS (NM_026083)	-524.0	NM_001359875	67302.0	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding	2.99301361038711	2.83830301354407	2.99340402275818	2.82112013845576	3.00699939183295	2.84231395141164	3.03820073512302	2.87011521273775	0.166880844715009	0.779165629873623	0.913841690258744
Merged-chr13-23571272-4	chr13	23571170	23571370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178187)	promoter-TSS (NM_178187)	-50.0	NM_178187	319166.0	Mm.261665	NM_178187	ENSMUSG00000069272	Hist1h2ae	1190022L06	histone cluster 1, H2ae	protein-coding	7.84076951982924	7.93313893302609	8.08269455311097	8.1179262156416	8.23948956544631	8.28578611867152	8.12502272425448	8.1522468092806	0.254161247820969	0.115856732401558	0.376589933126792
Merged-chr17-28909561-3	chr17	28909474	28909674	+	851.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172450, exon 2 of 12)	exon (NM_172450, exon 2 of 12)	4309.0	NR_045457	74179.0	Mm.248931	NR_045457	ENSMUSG00000085333	1700030A11Rik	-	RIKEN cDNA 1700030A11 gene	ncRNA	3.37020895019807	3.40779644100879	3.14652403867089	3.00800830284343	3.17517939537083	2.98442397384862	3.35642947703873	3.14496183864757	-0.241678393614479	0.676125337770997	0.867055678176773
Merged-chr19-18631895-4	chr19	18631814	18632014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145497)	promoter-TSS (NM_145497)	-101.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	8.25672043866865	8.32718338442548	8.16926431129603	8.21496425783334	8.1428071110832	8.16208668418016	8.45721669109904	8.11380676328405	-0.0223103583286472	0.891062569491378	0.959254414522706
Merged-chr8-126474901-6	chr8	126474766	126474966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159907, exon 1 of 30)	exon (NM_001159907, exon 1 of 30)	199.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	5.60666062094304	5.54189058546383	5.88028735025417	5.31872203156697	5.43615833785496	5.53181897344735	5.1997960401515	5.49786572999858	-0.284542221294628	0.334980128563839	0.645327232084159
Merged-chr8-124020918-2	chr8	124020818	124021018	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357315, exon 1 of 5)	5' UTR (NM_001357315, exon 1 of 5)	138.0	NM_001357315	102162.0	Mm.291777	NM_133966	ENSMUSG00000038697	Taf5l	1110005N04Rik|AI849020	TATA-box binding protein associated factor 5 like	protein-coding	4.80045806645542	4.74282832746914	4.47617150020916	4.43698741804035	4.91714137850545	4.78279567666547	4.91293766034697	4.72424920543529	0.484952507529888	0.15934997262017	0.446831535657542
Merged-chr12-34789227-4	chr12	34789134	34789334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	MLT1F|LTR|ERVL-MaLR	127861.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	6.03706760117948	5.79424887408277	6.12437857898736	6.47596186557044	6.29760582054854	6.36112782284204	6.38730319002419	6.2579638750541	0.26082708858839	0.309830205228487	0.62199416660177
Merged-chr19-55818143-4	chr19	55818050	55818250	+	894.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	76340.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.69446840998214	4.48730743619225	4.42415922178239	4.74476137277659	4.46920252414833	4.36611402690573	4.44636348520822	4.18563476054314	-0.520997390814036	0.166871275244291	0.458334188717476
Merged-chr3-58690739-4	chr3	58690637	58690837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009174, intron 1 of 1)	intron (NM_009174, intron 1 of 1)	1651.0	NM_009174	20439.0	Mm.2847	NM_009174	ENSMUSG00000036432	Siah2	AA415433|Sinh2	siah E3 ubiquitin protein ligase 2	protein-coding	7.16177151808642	6.883125938526	7.10509101068644	7.43567903263813	7.09903911917192	7.15779718658216	7.2246736968033	7.14662505263974	-0.0264356643912206	0.897180547305209	0.961579251319507
Merged-chr6-51524497-5	chr6	51524454	51524654	+	859.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361581, intron 1 of 6)	intron (NM_001361581, intron 1 of 6)	294.0	NM_001361580	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	3.8922556067668	4.11522743029691	4.16122447463565	3.50930502919345	3.69577186005292	4.15947515682213	3.82588787966158	3.48724080395989	-0.356731487590789	0.489714622092319	0.761935283416117
Merged-chr9-96652931-2	chr9	96652829	96653029	+	880.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21426.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	2.97651987611901	2.8805995054501	2.97688330985744	2.97718516664045	3.0167456228734	3.20185642921197	2.7742971170457	3.03462793042224	0.255304011118898	0.667080110547111	0.86221345902729
Merged-chr4-132618025-4	chr4	132617922	132618122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21024.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	7.48510182110079	7.6514004477422	6.88470079196164	7.29368184278117	7.27134760899106	7.39289387537176	7.13413633469568	7.30748474411324	-0.110142184241756	0.611254511385664	0.832251855180034
Merged-chr12-86888241-4	chr12	86888132	86888332	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3418.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	5.84376438702321	5.74890761576151	5.3079707393686	5.34599117461249	5.64232622833598	6.08657754171067	5.98603920762325	6.23314350738768	0.691531543792373	0.0178024312645048	0.118326571573087
Merged-chr5-21367671-4	chr5	21367568	21367768	+	927.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	-5005.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	4.59169587557997	4.75683619412021	4.26155553841822	4.5978428329237	5.04925897212192	4.63823265000165	4.72699960233721	4.95046021698261	0.609741279284988	0.0903064469660929	0.328206412489126
Merged-chr17-88439772-3	chr17	88439659	88439859	+	754.633362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355743)	promoter-TSS (NM_001355743)	-945.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	3.36166740159599	3.02150905418522	3.11312565832469	3.35638199710618	3.26455581446105	3.87236376265015	3.23166425378772	3.41572084090653	0.831843525345137	0.150238090650648	0.432842105335645
Merged-chr10-21556557-3	chr10	21556459	21556659	+	835.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36586.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	3.13395929010695	3.48055712119707	3.26248409923701	3.18842544753641	3.28209727884864	3.37562534425861	3.52160414688543	3.58312098246015	0.604645031153506	0.252720662330413	0.563984491060167
Merged-chr9-64016697-4	chr9	64016599	64016799	+	929.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 1 of 3)	intron (NM_008542, intron 1 of 3)	5360.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	4.52326273870266	4.71873809413735	4.60476470281835	4.84312560150489	4.43480078541518	4.47447046461522	4.32676042349522	4.67761970496084	-0.464006318510358	0.203256026483484	0.506035701611328
Merged-chr4-42968884-3	chr4	42968774	42968974	+	923.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1072.0	NM_026088	67317.0	Mm.478018	NM_026088	ENSMUSG00000028451	1700022I11Rik	-	RIKEN cDNA 1700022I11 gene	protein-coding	3.99341849348143	3.95363160097704	4.06119388874183	3.383289566335	5.55492372563734	5.74273825676299	5.5373509800775	5.70785342389688	4.0222244582499	5.3974998491962e-27	4.45589375923863e-24
Merged-chr15-94680854-4	chr15	94680746	94680946	+	955.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178789, intron 2 of 7)	RMER1A|Other|Other	51661.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	4.59689837857094	4.44963071151207	4.96999267600964	4.95120941171859	5.24542252659992	5.45898740604693	5.31500842438184	5.36495336390624	1.07960900355251	0.00124551377772443	0.0160518604353878
Merged-chr14-31251375-4	chr14	31251236	31251436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360624)	promoter-TSS (NM_001360624)	-21.0	NR_153760	71838.0	Mm.5348	NM_027949	ENSMUSG00000021902	Phf7	1700006H01Rik|1700010P14Rik|AI427892|AW555949	PHD finger protein 7	protein-coding	7.00434628456359	7.1995424373245	6.85396827089772	6.52250976840634	7.4458666152849	7.63525185925126	7.42146488778346	7.48898531897962	0.80644331252253	0.000177846095169942	0.00330002794788877
Merged-chr15-12027979-4	chr15	12027887	12028087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31980.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	5.50912098799297	5.49752188325326	5.67143128345144	5.85586160251291	5.74918997751301	5.53591000316338	5.53826633088136	5.83265397864891	0.0282128232500204	0.918079574709835	0.969798468133041
Merged-chr10-79970885-2	chr10	79970785	79970985	+	626.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_130455, exon 1 of 9)	5' UTR (NM_130455, exon 1 of 9)	161.0	NM_130455	170483.0	Mm.391566	NM_130455	ENSMUSG00000035745	Grin3b	GluN3B|NR3B	glutamate receptor, ionotropic, NMDA3B	protein-coding	2.61834368224342	2.95251877762572	2.95810257972167	2.63193966917964	2.69133479886181	2.94226931164582	3.00441222801025	3.22539648240378	0.790069456360504	0.226166286248797	0.534714293609392
Merged-chr19-8921209-3	chr19	8921131	8921331	+	877.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024256, intron 1 of 4)	intron (NM_024256, intron 1 of 4)	838.0	NM_024256	72727.0	Mm.259	NM_024256	ENSMUSG00000071649	B3gat3	2810405M13Rik	beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	protein-coding	3.19493876210622	3.38978569862242	3.1304112185094	3.27405687160993	3.57534642977921	3.30628178628103	3.46427834995677	3.42493740734423	0.691072260976962	0.185695417827822	0.483585287292957
Merged-chr14-49022346-4	chr14	49022280	49022480	+	655.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207214, intron 13 of 17)	L2a|LINE|L2	-44169.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	3.12664544958133	3.02832200697697	3.41941412849213	3.17280389272748	2.91981112060377	3.58875467442947	3.35196360873691	3.46861237478136	0.572671987381911	0.331686847100269	0.642802095357565
Merged-chr17-47600151-4	chr17	47600040	47600240	+	810.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081636)	TTS (NM_001081636)	6673.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	3.74947611285018	3.36431064018389	3.75002778915293	3.76774409654871	3.59935268157813	3.39755807923437	3.6847840999127	3.88645750613844	-0.0537507595035153	0.915036663000555	0.968396474535973
Merged-chr8-78889863-3	chr8	78889765	78889965	+	931.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68713.0	NM_030145	78651.0	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	3.9165724940204	4.33301039891589	4.01517239537437	4.37359146631205	3.76560671110358	3.39537035438879	3.79612684830936	4.14675651206564	-1.03810831041193	0.0406490916562458	0.203786568178611
Merged-chr3-116893112-4	chr3	116893011	116893211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009146, intron 9 of 16)	MTD|LTR|ERVL-MaLR	31431.0	NM_009146	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	6.47091078936146	6.68696125394495	6.87329856544075	6.88848989417419	7.11345813992943	7.39568550856205	7.04034727544486	7.26558109313656	0.631238217280419	0.00254273933829106	0.0281039818882328
Merged-chr6-129421448-4	chr6	129421363	129421563	+	979.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205363, intron 6 of 6)	MTC|LTR|ERVL-MaLR	12601.0	NM_001205364	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	5.35782297940098	4.91954985831858	4.82734483733346	5.43684745365102	5.33781804828248	5.04569531412371	5.09558697150339	5.08392518700238	-0.0461283039010191	0.890923906597361	0.959235709388799
Merged-chr5-138194423-4	chr5	138194386	138194586	+	997.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178612)	TTS (NM_178612)	172.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	4.65193410078536	5.25732220496834	5.34485194874943	4.94651303196337	4.9210234447097	5.11488126669298	4.8786142973228	5.3141503304406	-0.0172274458933811	0.960298361203159	0.98588064749437
Merged-chr12-83988435-2	chr12	83988335	83988535	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_134188, exon 1 of 3)	exon (NM_134188, exon 1 of 3)	574.0	NM_134188	171210.0	Mm.371675	NM_134188	ENSMUSG00000021226	Acot2	AA571646|MTE-I|Mte1	acyl-CoA thioesterase 2	protein-coding	4.10999213768364	4.45119439030163	4.25283161869046	3.55934252304011	4.18333109839527	3.83106600340065	4.23318277364859	4.92784050729903	0.530297979674029	0.30582169919193	0.618270924982458
Merged-chr7-143043126-4	chr7	143043019	143043219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 2 of 4)	intron (NR_110355, intron 2 of 4)	-9631.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	6.0381042344665	6.70640532839505	6.2113699872181	6.43190687089171	6.31319933748633	6.67311903232856	6.29431050643079	6.10213986446425	-0.0303451396014267	0.906926115186729	0.965481261274948
Merged-chr15-85383595-4	chr15	85383466	85383666	+	771.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016843, intron 6 of 11)	intron (NM_016843, intron 6 of 11)	47185.0	NM_016843	54138.0	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	3.78186404779801	4.18515787917141	4.07609264651704	3.92198907232499	3.71061396914642	3.95696920570416	3.9209272439484	3.8340500251254	-0.408245176486555	0.359933939908735	0.665587912953958
Merged-chr16-43363104-4	chr16	43362997	43363197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	LFSINE_Vert|SINE|tRNA	57099.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	6.01759874866829	5.75255887348107	6.27874685302123	6.1125773493203	5.56207676645689	5.86724207336371	5.81171373274609	5.6590304677439	-0.535467430620562	0.0415908479625993	0.206528240905596
Merged-chr5-90783871-4	chr5	90783784	90783984	+	952.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2217.0	NM_203320	330122.0	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	4.90311954627483	4.79460265067894	4.9039530028243	4.83646103614983	4.43249145012519	4.47651482181851	4.67171273479745	4.29298878248259	-0.836751840612389	0.0178600464798982	0.118565589292359
Merged-chr7-84152158-4	chr7	84152047	84152247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133722)	promoter-TSS (NM_133722)	-254.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	7.72412515411203	7.87616175433827	7.55359030699211	7.80951308946878	7.67718210782961	7.75846328323583	8.05883044747631	7.2005934790513	-0.0518028395082847	0.809768449582584	0.92664922546002
Merged-chr19-6067956-4	chr19	6067855	6068055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028454)	promoter-TSS (NM_028454)	-105.0	NM_028454	73166.0	Mm.489613	NM_028454	ENSMUSG00000024799	Tm7sf2	3110041O18Rik|ANG1|C14SR|Dhcr14	transmembrane 7 superfamily member 2	protein-coding	6.99722475279651	6.55188557360266	6.5184342323413	6.80350181219733	6.86474070500281	6.66094771491464	6.6753304534146	6.59688260648958	-0.0355969190847582	0.871174754413929	0.951579046411027
Merged-chr2-155751502-4	chr2	155751314	155751514	+	927.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011171, exon 1 of 4)	exon (NM_011171, exon 1 of 4)	197.0	NM_011171	19124.0	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	3.89124155660171	3.98694764321199	3.89179757268605	3.78124164104643	4.11519696920538	4.11190473451772	3.7162954031802	3.939118233982	0.281358495465045	0.521131953526414	0.781231467746185
Merged-chr17-34264166-4	chr17	34264083	34264283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207105, intron 1 of 5)	intron (NM_207105, intron 1 of 5)	956.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	5.57312268085391	5.92836803020747	5.76459806106326	5.31391110304417	6.33701543663997	5.89035970152432	6.0257238454834	6.16737730822927	0.761007653709098	0.00600025603105989	0.0542406026578678
Merged-chr5-138116966-4	chr5	138116868	138117068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011757)	promoter-TSS (NM_011757)	63.0	NM_001044705	22697.0	Mm.2760	NM_011757	ENSMUSG00000037017	Zscan21	AI326272|CTfin51|RU49|Zfp-38|Zfp38|Zipro1	zinc finger and SCAN domain containing 21	protein-coding	6.56484808981428	6.55599813631236	5.94219608656296	6.21219945271992	6.0694258486089	6.47711133750487	6.13412646344174	6.24064901132106	-0.162988230977198	0.525664828765018	0.783367294725902
Merged-chr5-136908140-4	chr5	136908061	136908261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026073)	promoter-TSS (NM_026073)	11.0	NM_026073	67286.0	Mm.41779	NM_026073	ENSMUSG00000007987	Ift22	3110017O03Rik|AI835745|AI847427|Rabl5	intraflagellar transport 22	protein-coding	4.97915173682752	5.21714495927779	5.18835355665149	4.84124070418458	5.40876740151392	5.3308990563531	5.63407651581081	5.08491116960895	0.60713997415025	0.05222659849241	0.238002720930446
Merged-chr11-97987272-2	chr11	97987172	97987372	+	790.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028199)	promoter-TSS (NM_028199)	-826.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	2.95519983737193	2.89425000805199	2.89847809254581	2.70183892009042	2.85565101554837	2.74537395180622	2.56165793768827	2.83723935910612	-0.473951502090063	0.464939987534496	0.745710042790831
Merged-chr4-6366496-4	chr4	6366392	6366592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	812.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	5.94845969440179	6.00015807497373	5.90390494063258	6.04929544160347	6.21871358784015	5.79760437323154	5.96296182777346	5.96745156541444	0.0404642721590763	0.869026313861304	0.950890741040292
Merged-chr14-29960382-4	chr14	29960275	29960475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1-int|LTR|ERVL-MaLR	-8005.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	6.12930847879859	6.09788137442391	6.06810750943973	5.58004391764589	6.2249403094892	6.3059709137961	6.11894153764898	6.44583425266963	0.48036461674577	0.0633846306687814	0.267198971061486
Merged-chr2-18065321-7	chr2	18065222	18065422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010804, intron 2 of 22)	CpG-7762	737.0	NM_001252561	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	4.96801724668136	5.24596369339445	4.92667435451041	4.75148149236342	5.84293188412653	5.88534224334892	6.12745164130395	5.86106722710531	1.67347607693623	4.66524011606969e-09	2.63336341175039e-07
Merged-chr9-37029982-1	chr9	37029882	37030082	+	790.0	f0_balb.idr	intron (NM_001029838, intron 2 of 12)	intron (NM_001029838, intron 2 of 12)	117340.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	3.13306417707233	3.39641173365034	3.24224378220855	3.36156614674135	2.579326191803	2.76892244697211	2.7329914208765	3.013203464991	-2.49463804129506	0.000501603415335129	0.00773869607985882
Merged-chr2-12115712-4	chr2	12115632	12115832	+	930.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001309, intron 28 of 29)	intron (NM_001001309, intron 28 of 29)	-185514.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	4.4227902034051	4.32510467793673	4.63614806118427	4.90780531396756	4.70223754660607	4.40606362996951	4.76095007629428	4.88110563737151	0.188358486841264	0.627057821918593	0.841002239063709
Merged-chr19-11321313-4	chr19	11321215	11321415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001276398, exon 7 of 7)	3' UTR (NM_001276398, exon 7 of 7)	13380.0	NM_001276398	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	6.37591315552493	6.25817097025312	6.31078646063325	5.83166311013643	5.89877385093802	6.20087896187586	5.68285645369488	5.50109251566729	-0.5536515662581	0.052750155865757	0.239503944910934
Merged-chr6-145599422-4	chr6	145599295	145599495	+	960.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16568.0	NM_009449	22147.0	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	4.98356475328285	5.28005702276044	5.61275196201053	5.74489313870277	4.57393127331703	4.68898285038123	5.09897898247389	5.18529277250374	-1.01922036072678	0.00519807062824372	0.0489021238762569
Merged-chr7-97082166-2	chr7	97082066	97082266	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	CpG	415.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	4.51972993339766	4.2915317147525	4.76492192709157	4.57507918735992	4.80266760476733	4.93770275132963	4.81361674605217	5.0865512666634	0.760484831559106	0.0289260836574478	0.163402979507105
Merged-chr1-64295501-4	chr1	64295412	64295612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4b|LINE|L1	-174123.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	7.5264225807427	7.67429574228846	7.55372378331963	7.25181142279139	7.24289521215062	7.39876392007944	7.22905136475172	6.71448109605551	-0.448144208704318	0.0393966970034315	0.199887197662503
Merged-chr11-72946155-3	chr11	72946059	72946259	+	837.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15010.0	NM_016745	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	4.45629064015785	4.12270000555102	4.06607214753534	3.72725759998387	3.82566717016382	3.99119575415918	3.90413793638654	3.69570853834313	-0.687566619121843	0.147571298740744	0.428716275787413
Merged-chr12-85483304-4	chr12	85483196	85483396	+	945.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9406.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	5.07220362612921	4.75720907959984	4.44716654905106	4.49887550087878	4.48674093403373	4.62322657160305	4.51327485090516	4.3514509765371	-0.466940832084667	0.222964227438395	0.531069778572449
Merged-chr13-15848203-4	chr13	15848090	15848290	+	987.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155430, intron 3 of 3)	intron (NR_155430, intron 3 of 3)	40947.0	NR_046131	328190.0	Mm.446957	NR_046131	ENSMUSG00000113338	A530046M15Rik	A530046M15	RIKEN cDNA A530046M15 gene	ncRNA	4.89673868218893	5.28297341676795	5.30671337852604	4.77571021798289	5.5475457689062	5.4208865318169	5.49259816803369	4.89430950512552	0.540225514019428	0.111602291000698	0.369150028864662
Merged-chr10-128412821-4	chr10	128412726	128412926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026259, intron 1 of 7)	intron (NM_026259, intron 1 of 7)	1210.0	NM_026259	67588.0	Mm.294120	NM_026259	ENSMUSG00000025373	Rnf41	2210404G21Rik|4930511A05Rik|4933415P08Rik|D10Ertd722e|FLRF|Nrdp1	ring finger protein 41	protein-coding	5.7873383114448	6.00631755255239	5.65357492243011	6.22126914201475	5.95933132653055	5.93994798575659	6.13072650482442	6.28434353334581	0.196946784871178	0.461050385580037	0.7429215866116
Merged-chr10-59969966-4	chr10	59969922	59970122	+	972.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18252.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	4.38802347383126	4.37339308638076	4.68262732201697	3.95514153006805	3.80672630751742	4.38737541878889	4.1930123903157	4.4265139520013	-0.355115840070385	0.435127113895946	0.724387520815781
Merged-chr1-61351047-4	chr1	61350961	61351161	+	895.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27371.0	NR_040483	77341.0	Mm.402964	NR_040483	ENSMUSG00000085447	9530026F06Rik	-	RIKEN cDNA 9530026F06 gene	ncRNA	4.07687661721342	3.77394194003677	4.65932676337931	4.56544522559596	4.50874853533045	4.20326482367472	4.20782559100525	4.39853906274213	0.035454991674244	0.938813454688031	0.977799606257435
Merged-chr1-136675567-3	chr1	136675460	136675660	+	955.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-7836.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	4.48090073932062	4.52465390708326	4.44014229890396	4.19326840127453	4.38173680760222	4.80409035589632	4.24113429579721	4.39450446553511	0.145681107749913	0.710126733570274	0.883997809839251
Merged-chr8-125600211-4	chr8	125600112	125600312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015535, intron 2 of 2)	ORR1E|LTR|ERVL-MaLR	15574.0	NR_015535	75930.0	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	5.40934454931404	5.47867159106613	5.56311297137473	5.35241467473509	6.02836204088516	5.97515383056168	6.2727988575917	6.14804560174741	1.08619458046869	1.43622709077811e-05	0.000382165263904654
Merged-chr4-46126641-4	chr4	46126522	46126722	+	825.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355375, intron 4 of 9)	intron (NM_001355375, intron 4 of 9)	11853.0	NM_173033	272027.0	Mm.249594	NM_173033	ENSMUSG00000035495	Tstd2	3010020C06	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	protein-coding	3.97548783290409	3.7299876533927	3.68138479848816	4.15679396995557	3.45707445264432	3.85470094615978	3.66706215976584	3.6793823532614	-0.741146396764293	0.130822350462113	0.40263684918279
Merged-chr9-106193169-1	chr9	106193069	106193269	+	569.0	f0_balb.idr	Intergenic	Intergenic	5770.0	NM_198931	67905.0	Mm.23018	NM_026447	ENSMUSG00000020253	Ppm1m	2810423O19Rik|AW610647|C77250|PP2Ceta	protein phosphatase 1M	protein-coding	3.24232122674347	3.02354115522364	3.24276234628129	3.24168785511561	3.02162686767562	3.23691590059135	2.91980239010601	3.44668042635584	-0.0868945893444981	0.881556425990519	0.955384724180766
Merged-chr7-25132112-2	chr7	25132012	25132212	+	973.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 1 of 13)	intron (NM_001163556, intron 1 of 13)	348.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	3.49207904029103	3.15259998389654	3.24768581762939	3.58323991287903	3.53478741450407	3.6090958278338	3.53288530532019	3.9135985273772	0.846122469432976	0.115219007900803	0.375511619201981
Merged-chr8-125513635-4	chr8	125513599	125513799	+	899.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 2 of 21)	intron (NM_001357372, intron 2 of 21)	-20866.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	3.66798790206772	3.88643952905383	4.37917117373596	4.31164524591204	3.88169479527013	4.17338393165559	3.71617038062426	4.13737300145225	-0.299186589669697	0.537345286495978	0.791026227405221
Merged-chr10-87854587-4	chr10	87854461	87854661	+	788.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3704.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	3.72683644097566	3.90915880371558	3.60707159912789	4.2440157631203	3.74132885613534	4.15745597432375	3.82216005795584	4.20070391525832	0.21519333780903	0.665288115559262	0.861336221350226
Merged-chr11-29846753-3	chr11	29846664	29846864	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 10 of 41)	Lx2|LINE|L1	-21096.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	3.82251830068498	3.72687464204688	4.30238670511256	4.2143444088608	3.72833254876644	3.7727941685357	3.95552511770076	3.71076204050488	-0.709155076520226	0.134169517494917	0.407825042139404
Merged-chr8-95001855-4	chr8	95001760	95001960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018882, intron 1 of 13)	intron (NM_018882, intron 1 of 13)	-15832.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	5.67781773064479	5.69091612258469	5.15194318166696	5.30584860030622	5.44726881373973	5.77796090788915	5.44354655249234	5.46713969227163	0.114378684370273	0.70045692532918	0.879171636184195
Merged-chr1-54911488-3	chr1	54911465	54911665	+	677.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	14822.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	2.35589299445058	2.16366265944208	2.21075200132176	2.2219160292295	2.58493706044667	2.52785011690065	2.47772822148193	2.48586306600896	1.66232588761364	0.0206353392069889	0.13078112451378
Merged-chr7-131391893-2	chr7	131391793	131391993	+	623.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175115, exon 4 of 4)	exon (NM_175115, exon 4 of 4)	18585.0	NM_175115	67143.0	Mm.334273	NM_175115	ENSMUSG00000040167	Ikzf5	2610034F18Rik|PEGASUS|Zfpn1a5	IKAROS family zinc finger 5	protein-coding	3.1052292267267	2.99677716542706	3.37217693966273	2.88996332738277	3.01556439922526	2.9535446173746	2.83646116864726	3.37001839344221	-0.151274616107071	0.808041162821442	0.92593795364266
Merged-chr9-115733356-4	chr9	115733278	115733478	+	885.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-176077.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	4.21832422728718	4.04447327515866	4.17234926815872	3.65351769544833	4.28412604645791	4.3473181291039	4.51880142536584	4.46491975161528	0.964091014571347	0.0225960969972183	0.138819919572329
Merged-chr10-77417207-3	chr10	77417085	77417285	+	876.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024838, intron 1 of 11)	intron (NM_001024838, intron 1 of 11)	1088.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	2.84738944455273	2.94843630308643	2.90734529084814	2.81934227517629	2.65344052555066	2.68118098878693	2.83756864363406	2.84631849203644	-0.589118415061694	0.34822987644377	0.656104977172479
Merged-chr8-35376587-4	chr8	35376490	35376690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177741, intron 1 of 1)	CpG	849.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	7.97606930319002	8.08124520845423	7.74176267360827	7.89238645158169	7.75715062972538	7.74584748344412	7.79749639009379	7.73650153013888	-0.220674159081868	0.184727505778901	0.482362490694317
Merged-chr11-59561945-4	chr11	59561836	59562036	+	869.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 7 of 9)	intron (NR_153314, intron 7 of 9)	9802.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	4.44855964024354	4.21976042650331	3.89965091554804	4.27084857686849	3.95177754326356	4.07883329986744	4.35220022116067	4.28823467693301	-0.136182162631944	0.748670516392785	0.901045258637214
Merged-chr7-27397772-4	chr7	27397667	27397867	+	889.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032610, intron 18 of 35)	intron (NM_032610, intron 18 of 35)	-1214.0	NM_001199236	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	4.60875222585608	4.84153456589796	4.52585784146385	4.36716038721668	4.67745072765092	4.78282331553142	4.70306183127545	4.72237432832915	0.290252213218392	0.413669943384653	0.708603780718027
Merged-chr13-60671347-3	chr13	60671281	60671481	+	863.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	69170.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	3.16078825056053	3.19621832097798	3.101020852688	2.77330904622984	3.38561498732581	3.08157061246621	3.14926378977265	3.27188742195908	0.680046235279515	0.246141487360421	0.557414811136374
Merged-chr6-146671619-4	chr6	146671509	146671709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14391.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	6.31142880919702	6.56285729138684	6.20576675211183	6.47566424437934	5.61672470140422	5.68694093694376	5.59869204426699	5.62310890632381	-1.22578764044836	5.52474405736649e-07	2.03227781529349e-05
Merged-chr14-79451821-4	chr14	79451718	79451918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034882)	promoter-TSS (NM_001034882)	-17.0	NM_001034882	432879.0	Mm.308666	NM_001034882	ENSMUSG00000075502	Kbtbd6	EG432879|Gm5465|Zbtbd6	kelch repeat and BTB (POZ) domain containing 6	protein-coding	6.75746957896572	6.31937783248954	6.33661868936136	6.50532320409915	6.44291830688005	6.24714938438144	6.52409738075742	6.29438874287423	-0.15440904635621	0.499160810612225	0.768207716806231
Merged-chr4-95051636-4	chr4	95051521	95051721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010591, exon 1 of 1)	5' UTR (NM_010591, exon 1 of 1)	601.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	7.09135455767038	7.28538623484377	7.33361667249192	6.91680435385687	7.01586948509739	7.45939303591118	7.31677569390142	7.12331211758763	0.103068921270885	0.621684297329425	0.837989368624988
Merged-chr6-112759084-4	chr6	112758982	112759182	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 11 of 21)	intron (NM_080448, intron 11 of 21)	-62412.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	4.92326173224625	4.88269878573323	4.88900994948904	5.07791355099999	4.8276618788858	4.65460821761274	4.7555747780799	5.08195633124202	-0.232440116355115	0.482467675510226	0.757239458339229
Merged-chr2-101881982-4	chr2	101881875	101882075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	1052.0	NM_001355625	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	7.36181975916543	7.34801495773091	7.31160760327017	7.34862254461176	7.45276896037245	7.65542293730161	7.29596038909327	7.24184940932824	0.104212614441572	0.569822873919712	0.809561615168898
Merged-chr12-17657769-4	chr12	17657728	17657928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-32981.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	6.43082368420725	6.31998475100917	6.67649147274823	6.07050776779354	6.25241122257925	6.38774092886794	6.17925759137859	6.44411646833491	-0.0875162077867561	0.720711789840795	0.888396101570344
Merged-chr7-36690689-4	chr7	36690587	36690787	+	803.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7431.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	3.88938814846616	3.78491373821826	3.94008081362693	3.55869020709388	4.17754564710276	4.15916437439357	3.87371360608494	4.03233035623069	0.793201828181968	0.072833928379579	0.290336368062839
Merged-chr19-14597465-7	chr19	14597283	14597483	+	970.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302951)	promoter-TSS (NM_001302951)	-170.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	4.95752404561363	4.82548952998402	4.6950312719229	4.44495567514753	5.04214893190769	5.16389359122224	4.93419160578853	5.02113135042299	0.640733928526755	0.0568611685882146	0.249803147810135
Merged-chr17-84194471-1	chr17	84194371	84194571	+	660.0	f0_balb.idr	intron (NM_183021, intron 36 of 37)	intron (NM_183021, intron 36 of 37)	-6524.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	2.76509923178154	2.67429631399111	2.93634977874378	2.91295926958302	2.57667829477674	2.67155519740131	2.48963731469584	2.70169559852626	-1.11075745570172	0.100870368938781	0.348588698527986
Merged-chr15-8665423-4	chr15	8665303	8665503	+	872.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 3 of 9)	intron (NM_148938, intron 3 of 9)	45404.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	4.35491923538949	3.8859116135261	4.09167671928473	3.93657762634444	4.39315078631628	4.21711278293285	3.97388020171222	4.42965566762583	0.507049458783114	0.232807759174655	0.542464407511367
Merged-chr7-113369361-4	chr7	113369260	113369460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133700)	promoter-TSS (NM_133700)	-21.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	7.77045793716217	7.94591325935804	7.68822983190099	7.86731889583943	8.15116499164058	8.1366321436849	8.24322402532414	7.93269972820922	0.381470766348366	0.0223284503313328	0.137782121034585
Merged-chr13-99263471-4	chr13	99263361	99263561	+	807.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78638.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	3.34622270250872	3.35835677396249	3.64901531323258	3.45874759809484	3.56924653826153	4.01813737093454	3.83182772704682	3.97846372430377	1.21368688445525	0.0134688780409399	0.0973597308902268
Merged-chr5-135934678-4	chr5	135934571	135934771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018871)	promoter-TSS (NM_018871)	-30.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	6.85692842170277	6.88951059425996	6.33605964507796	6.44668227150403	6.96918196844054	7.06061644958149	6.91308309084779	6.77049537404069	0.402389286239274	0.0751472252557846	0.295846479340791
Merged-chr11-101008791-4	chr11	101008685	101008885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243051)	promoter-TSS (NM_001243051)	-667.0	NM_016920	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	6.01599920759907	6.21627013988788	5.70997791934859	5.86532901012864	6.09945537438203	6.03667259259709	5.54115027828766	5.97014336550784	-0.0457308366376199	0.866282171573997	0.949874431032359
Merged-chr2-148585927-4	chr2	148585833	148586033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-86682.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	5.14408096650655	5.22258165516521	5.0450685463368	4.97651785607781	4.85739238280157	5.37975050290829	5.24067122802179	5.10902726599218	0.104741145755749	0.740786381810449	0.898040260084917
Merged-chr10-127266819-3	chr10	127266738	127266938	+	897.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027151, intron 1 of 13)	CpG	576.0	NM_001190453	69654.0	Mm.167537	NM_027151	ENSMUSG00000025410	Dctn2	2310042E05Rik|C130077D06Rik|C87049|DCTN-50|GMP23-48K|RBP50|p50	dynactin 2	protein-coding	3.78951411683876	3.69515000706577	3.94005348191478	3.81219230092259	4.13182946132052	3.79857697869592	3.4830224992147	4.19254212492721	0.356866470823185	0.461003778493656	0.742897621675344
Merged-chr10-58418508-2	chr10	58418408	58418608	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359116, intron 9 of 9)	intron (NM_001359116, intron 9 of 9)	24135.0	NM_001346676	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	3.2910394010943	3.07156856541225	3.29146528063614	3.47724662619318	3.11890686813952	3.28099342674434	3.27914700174173	3.68674867362297	0.203921711217262	0.720652990770535	0.888354390739079
Merged-chr14-55578472-4	chr14	55578378	55578578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011189)	promoter-TSS (NM_011189)	-16.0	NM_011189	19186.0	Mm.830	NM_011189	ENSMUSG00000022216	Psme1	AW413925|PA28a	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	protein-coding	6.66452976498391	6.46161275364856	6.52147082350365	6.77959848065488	6.78046399442354	6.45754407206724	6.88957219238092	6.7626344647032	0.162007918379763	0.456270165387948	0.73967372177896
Merged-chr9-61013130-8	chr9	61013035	61013235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3934.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	4.81452928156319	4.24804666065175	4.67506079142033	4.35851534364642	4.68677544925763	4.6491052096438	4.41063580828789	4.67194796509029	0.181727375273359	0.63212530952719	0.843729759303872
Merged-chr3-88579986-2	chr3	88579887	88580087	+	727.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_001356316, exon 2 of 6)	exon (NM_001356316, exon 2 of 6)	379.0	NM_025448	66256.0	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|SSR-beta|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	2.86913602073637	2.8169761350943	2.9285364702042	2.34773220453428	2.92270517637852	2.63458274089898	2.52123547506287	3.08882314582558	0.217936788709644	0.768949413923473	0.909549493712757
Merged-chr2-119336666-3	chr2	119336567	119336767	+	762.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10470.0	NR_030683	100043609.0	Mm.185068	NR_030683	ENSMUSG00000074912	Gm14207	Dll4	predicted gene 14207	ncRNA	3.43402122222783	3.25472478732359	3.16304652376213	3.39439963989321	3.09249507559965	3.00297266307241	3.31933838037019	3.09968619596834	-0.714488014740108	0.204986291912883	0.508517432602965
Merged-chr13-45288638-4	chr13	45288540	45288740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101102.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	5.57517919310332	6.29163343588155	5.70713221363027	5.39303464657086	5.90406906030002	5.5460866983882	5.57511966227142	5.3951571414961	-0.259871269707356	0.425261555576817	0.716798699102566
Merged-chr11-88069123-4	chr11	88068988	88069188	+	892.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016686, intron 1 of 5)	CpG	809.0	NM_016686	22344.0	Mm.46628	NM_016686	ENSMUSG00000018377	Vezf1	AI848691|AW046909|db1	vascular endothelial zinc finger 1	protein-coding	4.57967186786429	4.34253465590117	4.34070025843341	3.85200488838469	4.80666838528317	4.27948540567366	4.08307687835157	4.42285258241543	0.332385611863751	0.459588349878739	0.742078333053983
Merged-chr1-191181524-5	chr1	191181419	191181619	+	937.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007498, intron 1 of 3)	intron (NM_007498, intron 1 of 3)	1814.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	3.96400474934597	4.25918139499788	3.80315316113244	3.88682468696202	3.99904367889114	4.0874468519747	4.2573583907444	4.05960408656333	0.301809080839432	0.481808946079461	0.756823034227611
Merged-chr8-56412210-4	chr8	56412100	56412300	+	986.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72768.0	NR_131020	75123.0	Mm.72666	NR_131020	ENSMUSG00000110310	4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA	4.79640811704558	5.0188418216618	5.17635070937792	5.35418755837598	5.15366701843414	4.93403654424007	5.09010777064236	4.47905428139545	-0.323862048896254	0.368553254252579	0.672992613762041
Merged-chr19-40637887-4	chr19	40637756	40637956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-21914.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	7.70264863260294	7.59999840874865	7.61541138215443	7.86223851037951	6.98448797338891	6.96163727285189	7.38980610922042	7.3310453751269	-0.7055008665879	0.000325906552588492	0.00542890299712058
Merged-chr2-110018447-4	chr2	110018350	110018550	+	923.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149736, intron 1 of 6)	intron (NR_149736, intron 1 of 6)	633.0	NR_149736	68201.0	Mm.181767	NM_026613	ENSMUSG00000027160	Ccdc34	2810027O19Rik|4930522P10Rik|AI596202	coiled-coil domain containing 34	protein-coding	4.65401386829931	4.57875135181986	4.31776972666274	4.43096015707321	4.53708597307338	4.62842011369104	4.29921661581913	4.79144806730628	0.170951494904657	0.645405017172291	0.85093233032594
Merged-chr6-148443091-2	chr6	148442991	148443191	+	814.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_198967, intron 1 of 19)	intron (NM_198967, intron 1 of 19)	1261.0	NM_198967	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	3.05302615013742	2.94675963522791	3.16625490949912	2.73666749942535	3.06379946441403	2.901250598618	2.92000742038538	3.21717462604015	0.242236332157964	0.691193801570949	0.87434437438054
Merged-chr10-77880557-3	chr10	77880453	77880653	+	837.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287074, intron 9 of 11)	intron (NM_001287074, intron 9 of 11)	-12867.0	NR_015547	75188.0	Mm.348012	NM_029200	ENSMUSG00000096573	1700009J07Rik	4930535B06Rik	RIKEN cDNA 1700009J07 gene	ncRNA	3.39626141415894	3.55203020417572	3.56029576803196	3.22321020327341	3.69952044927268	3.10328301380505	3.59497638097486	3.50605915941496	0.226242798234624	0.679868612950384	0.86857902618052
Merged-chr6-33249050-4	chr6	33248951	33249151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009148)	promoter-TSS (NM_009148)	-77.0	NM_009148	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	8.46187129233912	8.09866359092692	8.31565055753363	8.64492681890456	8.50788920783952	8.19095674105574	8.54220041710462	8.35956344832134	0.0106015715771397	0.954047591877961	0.983636154741855
Merged-chr5-76179402-4	chr5	76179311	76179511	+	834.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4469.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	4.65378394459101	4.74630295449612	4.36680591392701	4.45544996115219	4.59534229179069	4.66980384101563	4.39252490347922	4.36417563349132	-0.102859952203183	0.781555258213699	0.914942299996594
Merged-chr1-55666411-4	chr1	55666291	55666491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	260445.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	5.40234476965218	5.31216093237999	5.09679287411891	5.5640666455206	5.46482328997606	6.11063373775469	5.78449333614171	5.59576602307296	0.650653878264125	0.0330193401572048	0.178298877882349
Merged-chr12-104835028-2	chr12	104834928	104835128	+	981.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040682, intron 1 of 12)	intron (NM_001040682, intron 1 of 12)	30048.0	NR_104436	94040.0	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding	3.83529606955166	3.53960789103071	4.02265934141276	3.34155392916041	3.64267568714754	3.79747073504976	3.66100225895874	4.32566609891369	0.52571864115463	0.320735052724572	0.63245145906536
Merged-chr17-24162875-4	chr17	24162807	24163007	+	895.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361535)	TTS (NM_001361535)	826.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	4.40146858098143	4.27856705237532	4.14925402650312	4.33315562230171	4.10243775015503	4.12446910551699	3.8201708260562	4.19249527854475	-0.581745838427488	0.157455530312609	0.444020727868199
Merged-chr11-68864898-4	chr11	68864743	68864943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11712.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	6.40318948470141	6.46883224762363	5.95039464311868	6.31739829708581	6.54765030037838	6.57973671621762	6.31869937332374	6.32846372773788	0.219519444677759	0.348414263802983	0.656235052875883
Merged-chr15-96285563-4	chr15	96285471	96285671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1951.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	7.46290531395368	7.67487580641454	7.06002368230165	7.26131931693998	7.64605185651573	7.66999726772036	7.81832473893501	7.71807030546371	0.436474899284273	0.0262559392519836	0.153527540719898
Merged-chr6-86370990-2	chr6	86370890	86371090	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026506)	promoter-TSS (NM_026506)	-550.0	NM_026506	68011.0	Mm.276802	NM_026506	ENSMUSG00000057278	Snrpg	2810024K17Rik|AL022803|SMG|sm-G|snRNP-G	small nuclear ribonucleoprotein polypeptide G	protein-coding	3.67064270291672	3.62555889754444	3.72309482126408	3.64738334761277	3.85039824583437	3.42116944344009	3.48908469575589	4.03410571954017	0.193126483574347	0.69758934794965	0.87794105411723
Merged-chr5-137787317-4	chr5	137787224	137787424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144913)	promoter-TSS (NM_144913)	-7.0	NM_001360023	381678.0	Mm.332765	NM_001005426	ENSMUSG00000037108	Zcwpw1	Gm1053	zinc finger, CW type with PWWP domain 1	protein-coding	5.71894679549015	5.82238738983472	5.35522656337215	5.25569729679119	5.86371652945462	5.71274200958883	5.99084656891418	5.44527582434641	0.374648443420154	0.209012961852182	0.513413860974639
Merged-chr19-18616750-2	chr19	18616545	18616745	+	943.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	15168.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	2.69306505933516	2.42653174132083	2.55560552236179	2.54191058004294	2.93039194819043	2.98633376600108	2.74713475613465	2.75584753364111	1.47949147092873	0.0232312689412605	0.141223456380651
Merged-chr2-35330975-4	chr2	35330864	35331064	+	962.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	6045.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	4.95710502437869	5.52794276248735	4.95792605832409	5.00714306573645	5.26488964832976	5.39452519961896	4.73807999931521	4.87906832546136	-0.0682638736306245	0.848269095381809	0.942625689889496
Merged-chr8-77543536-3	chr8	77543431	77543631	+	800.216675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5866.0	NM_001081240	102182.0	Mm.197630	NM_178903	ENSMUSG00000037134	Prmt9	AI931714|Prmt10	protein arginine methyltransferase 9	protein-coding	3.45549501959483	3.512608547803	3.61157788510825	3.67262847654452	3.28906619097032	3.51329577920833	3.26803449699374	3.3389778862264	-0.764539692496209	0.1369549785361	0.411529821733411
Merged-chr2-116894062-4	chr2	116893938	116894138	+	958.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR3|LTR|Gypsy	-6114.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	3.89793596427637	4.55226245052322	4.44857642868232	4.301701723098	4.82450814324937	4.40218189832618	4.46775969927231	4.12323408374353	0.382594641520744	0.377387196352186	0.680041038409456
Merged-chr9-108716364-4	chr9	108716249	108716449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008924, intron 2 of 10)	B4A|SINE|B4	24206.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	5.59571385926411	5.58060445586637	5.33394496399445	5.94142582419257	5.35723712821962	5.44631819649817	5.73958191775492	5.7648704383006	-0.11536328498307	0.699589048552782	0.878870538816214
Merged-chr1-180793669-4	chr1	180793564	180793764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19941.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	6.50071877598994	6.4725579651419	6.40438798827348	6.23567862821163	6.30504955414731	6.23336952532106	6.0687548248973	5.9107429040077	-0.381059376177549	0.106090777323218	0.358925587674763
Merged-chr15-79934042-5	chr15	79933977	79934177	+	837.483337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1431.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	3.03479886597786	3.17987834871747	2.83205471125155	2.53192168233887	3.35526327728533	3.26960497478248	3.14254383223755	3.09494406110327	1.24493595065775	0.0556131079965576	0.246839557620234
Merged-chr5-125178652-3	chr5	125178563	125178763	+	943.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253905, intron 1 of 42)	CpG	551.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	3.87033466014141	3.91927512796932	3.96518782004598	3.68507725095741	3.61931604363666	3.71762139208164	3.90188774463213	3.91653905235686	-0.188478085811512	0.680782782017698	0.868956507598538
Merged-chr12-80872593-2	chr12	80872493	80872693	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 5 of 6)	MTC|LTR|ERVL-MaLR	51854.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	2.93010060201075	2.78663419372231	3.1201486590092	2.91898914962566	3.41922233140022	3.29040564522809	3.10833411465628	3.11849655889473	1.2105247786779	0.0361435833239663	0.188999714767602
Merged-chr10-11149328-4	chr10	11149252	11149452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172937)	promoter-TSS (NM_172937)	-78.0	NM_001077707	268281.0	Mm.133101	NM_172937	ENSMUSG00000090112	Shprh	2610103K11Rik|AA450458|AU024614|BC006883|D230017O13Rik|E130018M05	SNF2 histone linker PHD RING helicase	protein-coding	9.11448074171764	9.1413058649252	8.9480044706233	9.11307180805519	9.21531002933419	9.23701088068497	9.31294554292837	8.8572690651414	0.1054617097284	0.506851108879649	0.772579717732286
Merged-chr6-88861166-4	chr6	88861068	88861268	+	990.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347327, intron 2 of 7)	ORR1E|LTR|ERVL-MaLR	12876.0	NM_176973	319655.0	Mm.302613	NM_176973	ENSMUSG00000033152	Podxl2	D130074J02Rik|PODLX2	podocalyxin-like 2	protein-coding	4.96834090826858	5.0800759556346	4.89776921079769	4.65840985005675	5.12634883929358	5.10768613883532	4.87443688339756	5.0657923085651	0.305818850385256	0.346839873309475	0.654983043837928
Merged-chr4-141301224-4	chr4	141301118	141301318	+	937.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010139)	promoter-TSS (NM_010139)	-3.0	NM_010139	13836.0	Mm.2581	NM_010139	ENSMUSG00000006445	Epha2	AW545284|Eck|Myk2|Sek-2|Sek2	Eph receptor A2	protein-coding	4.73521823416552	4.86026980222847	4.57555489361441	4.7452105864125	4.82649512616319	4.66339720325793	4.63677074814841	4.87522644126017	0.0472565965826498	0.888686792617626	0.958305617678615
Merged-chr10-111010747-2	chr10	111010647	111010847	+	801.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172554)	promoter-TSS (NM_172554)	-681.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	3.5944158251845	3.14696475515662	3.54233420781852	3.39869683772079	3.4122477160297	3.60418535284587	3.52793416431592	3.78348566858685	0.519326863154273	0.314942965205964	0.626882699116201
Merged-chr2-157838433-4	chr2	157838344	157838544	+	955.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025680, intron 11 of 15)	intron (NM_025680, intron 11 of 15)	-76209.0	NM_198627	277432.0	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	4.5088249487324	4.40010246233476	4.86284311083366	5.08034553110816	4.49660459198333	4.21967290000461	4.76911774114108	5.31375085744557	0.0307484187499552	0.945021570716086	0.980260935841461
Merged-chr7-120940513-3	chr7	120940399	120940599	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025298, exon 18 of 21)	exon (NM_025298, exon 18 of 21)	22755.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	3.70058786860415	4.18450196264915	4.42594601781232	4.49195090469371	3.30458816373776	3.34933273981627	3.56827290181195	3.44951009534817	-2.63663046176295	2.65027079781305e-06	8.45177531888597e-05
Merged-chr13-100552206-2	chr13	100552106	100552306	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360536, intron 1 of 8)	CpG	292.0	NM_008756	18260.0	Mm.4807	NM_008756	ENSMUSG00000021638	Ocln	AI503564|Ocl	occludin	protein-coding	3.23501762755398	2.96442313548245	3.12382740953028	2.99474355006478	3.06682296818532	3.17417710985886	3.11211314953606	3.06263718161593	0.106841737615857	0.849346554082862	0.943120119372541
Merged-chr17-50876615-4	chr17	50876517	50876717	+	951.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 13 of 21)	intron (NM_028162, intron 13 of 21)	177936.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	4.81649768245234	4.83456922977608	4.70807449866242	4.60587926969638	4.46853450667587	4.72146381860153	4.86133714568804	4.49949185046666	-0.20463179057141	0.562587911055701	0.805707247859895
Merged-chr3-40800540-2	chr3	40800440	40800640	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045576, intron 1 of 15)	CpG	589.0	NR_045576	20873.0	Mm.3794	NM_011495	ENSMUSG00000025758	Plk4	1700028H20|AI385771|Sak|Stk18	polo like kinase 4	protein-coding	4.36952248255771	4.46687781368922	4.4636490485994	4.55000683982444	4.75325245859882	4.91798489022929	4.30234802722897	5.16832105453979	0.746994391920392	0.0528015198264413	0.239660718003205
Merged-chr1-43910846-3	chr1	43910767	43910967	+	904.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MusHAL1|LINE|L1	-23127.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	3.90456140887196	3.51749733000518	4.1985767549087	3.9463422141401	4.07964776270112	3.64048906410591	3.68620279694165	3.45703546669253	-0.472856241825993	0.36800685667357	0.672498811587355
Merged-chr11-100701515-4	chr11	100701424	100701624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030150, intron 6 of 12)	intron (NM_030150, intron 6 of 12)	2747.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	5.79002077002399	5.87194268081638	5.69525078771218	5.07408590038593	5.80229181711698	5.79358727038466	5.69075847412089	5.44507893753318	0.110077091882654	0.725744456891694	0.890921883682774
Merged-chr9-123475769-4	chr9	123475658	123475858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-2943.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	6.10796217997324	5.50204675218119	6.14776982970648	5.88303172663368	5.79250962371833	6.02400101330701	6.01762099761386	6.19923764092831	0.13200171204749	0.627103840859492	0.841002239063709
Merged-chr18-49945640-4	chr18	49945530	49945730	+	989.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081371, intron 37 of 42)	intron (NM_001081371, intron 37 of 42)	-33797.0	NM_001177760	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	5.76779103795284	5.23403952301457	6.35777362423503	6.70611075871254	5.68397134203671	5.24350110814206	5.73918613523972	5.86092398543688	-0.783416482178764	0.0378121074982747	0.194396292385146
Merged-chr19-34198181-4	chr19	34198082	34198282	+	786.016663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	Lx5c|LINE|L1	5248.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	4.709833598515	4.21857964102828	4.48659181985901	4.21574644021953	4.47047395343867	4.48754977934021	4.1969702056044	4.74109215002391	0.176460405503734	0.659271574263179	0.858214147743719
Merged-chr4-132898429-3	chr4	132898310	132898510	+	717.450012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163792)	TTS (NM_001163792)	-13952.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	2.81196934125807	2.65724391472121	2.72660009066071	2.26185704822764	3.70607558707686	3.97103820724673	3.65079079668416	3.52342389179061	7.016717547478	8.43222603894022e-14	1.12396520079724e-11
Merged-chr2-129198646-4	chr2	129198497	129198697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159593)	promoter-TSS (NM_001159593)	-176.0	NM_015747	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	8.19221025237778	8.37001156190876	7.88514660764688	7.98804176693543	8.42041214494284	8.56248171689061	8.54225281053975	8.3204923251862	0.436129103680996	0.0129876226031336	0.0949123192267399
Merged-chr8-47702516-4	chr8	47702423	47702623	+	908.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11408.0	NM_001359133	70925.0	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	4.21905412664911	4.6705186652696	4.69571227518086	4.94759022013762	4.24375095319666	4.86596858264687	4.4800156160383	4.16411878514955	-0.46196982910406	0.276597275907422	0.588579924847301
Merged-chr12-28635323-1	chr12	28635223	28635423	+	591.0	f0_balb.idr	intron (NM_011300, intron 3 of 6)	intron (NM_011300, intron 3 of 6)	630.0	NM_011300	20115.0	Mm.279839	NM_011300	ENSMUSG00000061477	Rps7	Mtu|Rps7A|S7	ribosomal protein S7	protein-coding	3.17134021286643	3.23512458734854	3.05762400367563	3.17262350284431	3.20657362990055	2.89808165894289	2.92387903678395	2.99512400491695	-0.578574914440241	0.327688769122675	0.639130025464207
Merged-chr18-77794698-4	chr18	77794611	77794811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152167, exon 3 of 3)	non-coding (NR_152167, exon 3 of 3)	161.0	NM_013831	19201.0	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	5.79759163370853	6.38931064719456	6.40124897527177	5.72489056715584	6.31292474786288	6.30130351400385	6.38468949428934	5.99105497636799	0.230881037827909	0.408696669042266	0.704479738712259
Merged-chr13-73417938-3	chr13	73417852	73418052	+	762.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49431.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	3.82350264439533	3.66434572151342	3.21924740046955	3.70718566527301	3.45165830363339	3.46565564747401	3.6696111258348	3.47103033791189	-0.354703382308022	0.497021940220217	0.766892646657016
Merged-chr5-113009788-4	chr5	113009750	113009950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	5688.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	4.79229011310444	4.93642434712716	4.97929751271594	3.63920904942712	4.41064305547301	4.82626315628213	4.29252081809327	3.71647655075225	-0.74019577659919	0.398073092587972	0.696321100599351
Merged-chr16-91375147-4	chr16	91375058	91375258	+	963.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 1 of 7)	ORR1C2|LTR|ERVL-MaLR	2375.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	4.92454178581862	5.39490076516743	4.92536876329573	5.1371728223044	4.27155700366171	4.69892839435112	4.86625598773669	4.88655821714617	-0.856411585717965	0.019692150230309	0.126652892495091
Merged-chr10-100059464-4	chr10	100059357	100059557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347156, intron 2 of 8)	intron (NM_001347156, intron 2 of 8)	43636.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	7.49208213457429	6.9931472693468	7.71784388034768	8.2186795561954	7.71927968824574	7.68973516537789	7.2408388846965	7.56161017832952	-0.162811637657486	0.542714090302198	0.793917205662524
Merged-chr1-165663917-4	chr1	165663825	165664025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178593, intron 2 of 6)	intron (NM_178593, intron 2 of 6)	-29384.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	5.61819004499791	5.61146534062475	5.64623428732027	5.97071505196832	5.91085576885665	5.97178580787298	5.69521919368973	5.7694772125874	0.165494267838204	0.534560372909834	0.789286995820758
Merged-chr6-32319317-3	chr6	32319237	32319437	+	961.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-191804.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	3.60031790087253	3.90294393102046	3.99928720205882	4.30854703540223	3.28010794736844	3.38847757589553	3.6974162236102	3.76278330274428	-1.35814008978972	0.0117170225012708	0.0883668091351936
Merged-chr2-60910918-4	chr2	60910804	60911004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-29466.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	7.35818705080634	7.80521475664256	7.3384833464953	7.29913559611281	7.70189481233313	7.6928368777645	7.67299561777349	7.29038680036552	0.181214692581368	0.380148314800602	0.682564774596403
Merged-chr7-44401878-4	chr7	44401793	44401993	+	900.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	17767.0	NM_016663	20981.0	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	4.07996874837318	3.65038680480783	3.730572834032	3.93026951519883	4.09490445508415	3.72888903620422	4.10474823977263	4.12096460445486	0.449753408530373	0.320421862787104	0.632306841456148
Merged-chr13-111796670-4	chr13	111796562	111796762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	12331.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	7.14571599873267	6.99811954229398	6.66515307646891	7.50972549748445	7.18149426112564	7.13987407155023	7.22008728914819	7.21949236726337	0.0773704018481917	0.736850050740655	0.896086114515881
Merged-chr7-55859665-4	chr7	55859579	55859779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	intron (NM_001164661, intron 2 of 31)	17608.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	5.69300622339447	5.72607199405999	5.43700856252948	5.62701404431601	5.65135590110043	5.87022123717055	6.44305949939079	5.6638457053806	0.520216132790251	0.0810226516141106	0.308801603036102
Merged-chr13-9171261-3	chr13	9171161	9171361	+	885.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001311117, exon 17 of 17)	3' UTR (NM_001311117, exon 17 of 17)	77380.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	3.04602748327052	3.04876425678035	3.04639691868467	3.14823669574357	3.4861253773365	2.88435581234989	2.84342381654972	3.04490280789189	0.112374039569169	0.858614810271727	0.946576014812915
Merged-chr15-79408901-4	chr15	79408780	79408980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5577.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	6.21653610103383	6.27523845419287	6.38619412833921	6.36168752489667	5.77507780584363	5.41835854598891	5.4192250812171	5.70986377847464	-1.13241677126471	9.27015281743846e-06	0.000257347974802049
Merged-chr15-58798201-4	chr15	58798101	58798301	+	810.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175212, intron 1 of 6)	intron (NM_175212, intron 1 of 6)	25226.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	3.59035796871668	3.50941439642161	3.53382245285036	3.3312765538093	3.8285800438385	3.7643022107303	3.68248123094008	3.92936515382104	1.0140015627453	0.0303541764940739	0.168558271857676
Merged-chr11-101067195-4	chr11	101067113	101067313	+	693.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2881.0	NM_013792	27419.0	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	3.92143536282663	3.96853136054348	3.87208421972829	3.56095353737993	3.96418600354368	3.99370928095687	3.90532015156493	4.01389641810663	0.408602016639766	0.359806239632767	0.665475022577823
Merged-chr8-76899180-4	chr8	76899066	76899266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028579, intron 1 of 1)	intron (NR_028579, intron 1 of 1)	1455.0	NR_028579	102640923.0	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	-	predicted gene 10649	ncRNA	7.19271714054412	7.08297476713462	7.24788874796101	7.32407927826033	6.97449030219608	7.20629823442455	7.11320016954267	6.99896114956253	-0.20419778059359	0.276018257970297	0.588083799810457
Merged-chr5-108132679-4	chr5	108132579	108132779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361467)	promoter-TSS (NM_001361467)	-59.0	NM_001361467	73130.0	Mm.363960	NM_028876	ENSMUSG00000063406	Tmed5	3110020O18Rik|4432412D15Rik|p24gamma2	transmembrane p24 trafficking protein 5	protein-coding	8.90720220625014	9.08223780978649	8.98194160322985	9.01200006923336	8.94740520670975	8.95498568213026	8.99420355138492	8.77586386370245	-0.0961054302920772	0.5002871942141	0.768850577358824
Merged-chr3-154584551-4	chr3	154584482	154584682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168358, intron 4 of 4)	B4A|SINE|B4	-12129.0	NM_009968	12972.0	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	5.82387742978789	5.95782868488056	6.60641229490214	6.95273269398154	5.75100138030733	5.81297606553792	5.939988724503	5.94323406442635	-0.879674108781922	0.00581520704324294	0.0530859917317204
Merged-chr4-126321133-1	chr4	126321033	126321233	+	699.0	f0_c57.idr	TTS (NM_011902)	TTS (NM_011902)	570.0	NM_133883	100206.0	Mm.11285	NM_133883	ENSMUSG00000042558	Adprhl2	AI836109|Arh3	ADP-ribosylhydrolase like 2	protein-coding	4.39057198596655	4.7133710350954	4.55412389857809	4.24545306760438	4.28570088245278	4.42972079405864	4.32781370659434	4.43114291600103	-0.259623650817133	0.501737163102069	0.769348331159891
Merged-chr3-132169222-4	chr3	132169084	132169284	+	939.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	83892.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	4.94159387782483	4.80420416679763	4.61307457664513	5.22896821848444	4.46651780894647	4.70372458126139	4.63261257139577	4.47863986835401	-0.776622373741684	0.0341311740507953	0.182402795837642
Merged-chr1-180226017-4	chr1	180225908	180226108	+	922.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011183)	TTS (NM_011183)	19942.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	5.01704535266569	5.42961665901563	4.79696796473602	5.11595713720268	4.68026705941226	4.89279241445204	5.09024152743264	4.98024433739621	-0.397180612322894	0.243943877806667	0.55499844270283
Merged-chr11-53774836-4	chr11	53774725	53774925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159393, intron 7 of 9)	intron (NM_001159393, intron 7 of 9)	4352.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	5.65787493567844	5.59056722079584	5.60722431287386	5.52418107288467	5.94813779154674	5.781635206426	5.44085545688121	5.40415425328251	0.145095812503037	0.605779564672849	0.829111710838148
Merged-chr8-83700619-3	chr8	83700499	83700699	+	687.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1420.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	3.256657736659	3.18773040089113	3.31165303437706	3.38143666498465	2.84099663604284	3.05212403394154	3.1881558871327	3.30976379812368	-0.729029384184142	0.21253393929015	0.517487068679264
Merged-chr8-20122299-4	chr8	20122274	20122474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	175058.0	NR_030708	547150.0	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	7.04363806269464	6.69945013030541	7.47231305851675	6.30195907684294	8.02697753482088	8.2289469523362	8.30474773482566	7.89869636334965	1.56755457081866	1.76164415167128e-09	1.08096611268802e-07
Merged-chr10-24090518-3	chr10	24090433	24090633	+	960.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001010837)	TTS (NM_001010837)	1761.0	NM_001010837	382348.0	Mm.377897	NM_001010837	ENSMUSG00000100186	Taar8b	Gm1149|taR-8b	trace amine-associated receptor 8B	protein-coding	4.23345818125929	3.9795249529425	3.96316140528333	4.42381528122718	3.97260470045013	3.86409865201583	3.89614288049487	3.96087776095035	-0.677883778785571	0.124305440953911	0.391259263361566
Merged-chr9-120602119-4	chr9	120602004	120602204	+	890.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24773.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	4.92628034211841	4.82186783373111	4.30689622916102	4.73027447073756	4.10870317085264	4.17550717862284	4.19153206752088	4.20691114059523	-1.29916935537631	0.00112593765539337	0.0147920111430869
Merged-chr3-137975667-1	chr3	137975567	137975767	+	578.0	f0_balb.idr	intron (NM_011932, intron 1 of 8)	intron (NM_011932, intron 1 of 8)	5882.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	3.0692482389951	3.20881853032671	3.06962376124959	3.07036503215993	3.00544890910366	2.98005974091287	2.99721519862303	3.38920338813462	-0.00718160418699741	0.990089939717134	0.996085111514102
Merged-chr10-127538481-3	chr10	127538380	127538580	+	908.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008512, exon 89 of 89)	3' UTR (NM_008512, exon 89 of 89)	-3921.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	3.99578607813954	4.00245881803793	4.41422104384636	3.75225173663406	3.72705650336577	3.90454263403929	3.92934966989264	4.37520417858198	-0.134587873815425	0.779155171926685	0.913841690258744
Merged-chr17-80207380-4	chr17	80207273	80207473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_036615)	promoter-TSS (NR_036615)	-68.0	NM_001195485	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	8.35090390546443	8.38736466831024	8.25143235092695	8.27574982122986	8.32679184756832	8.48596578854254	8.28060439951548	8.29180456598495	0.0393147766519212	0.795128893968016	0.920762027490351
Merged-chr10-37141796-4	chr10	37141696	37141896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-2870.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	6.17286991229032	5.65903242221026	5.45005774983135	6.16639609311629	5.69870218544368	5.85608923516039	5.79896616312443	5.53725129236466	-0.302629230899487	0.305548547676679	0.617941664868378
Merged-chr16-4719246-4	chr16	4719149	4719349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290761, exon 1 of 5)	5' UTR (NM_001290761, exon 1 of 5)	107.0	NM_001290763	67824.0	Mm.28451	NM_026393	ENSMUSG00000063445	Nmral1	1110025F24Rik|AI256624	NmrA-like family domain containing 1	protein-coding	6.02863016244592	6.13154705525739	6.24170488511775	5.55386812594683	5.95800271848941	6.20455359803451	5.6109764718955	5.98269630889337	-0.0708072027160619	0.805939867841052	0.925317663285668
Merged-chr12-8928804-4	chr12	8928690	8928890	+	792.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008640, intron 1 of 6)	L1MA6|LINE|L1	7483.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	3.16590915441855	3.21231046567367	3.10443983060213	3.21384233502367	3.28265441438467	3.27665877365135	3.3735789536988	3.16474172305756	0.368065371283737	0.489670909563252	0.761934122721916
Merged-chr8-11180052-3	chr8	11179961	11180161	+	997.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132744.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	5.20170563674282	4.70157116602337	5.49016385970608	5.5066732628735	3.92465752704134	4.20370088052895	4.28297284366103	4.29923786010365	-2.43965111448402	5.35937289312811e-09	2.99195924047032e-07
Merged-chr12-31350441-3	chr12	31350352	31350552	+	956.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007861, intron 1 of 13)	intron (NM_007861, intron 1 of 13)	1019.0	NM_007861	13382.0	Mm.3131	NM_007861	ENSMUSG00000020664	Dld	-	dihydrolipoamide dehydrogenase	protein-coding	3.8705198904015	4.15367772057342	4.05412088819237	3.52585038474018	3.86914744069418	3.71694424080552	3.58534417533994	3.81868505871871	-0.457429782620364	0.35472036067706	0.661365305978239
Merged-chr8-70841285-4	chr8	70841177	70841377	+	915.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_032397)	TTS (NM_032397)	-1557.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	4.72388449775761	4.63595009267196	4.26713294763969	4.37659019607518	4.63060965635884	4.53883295089695	4.38932614452442	4.64971318307267	0.118598359331406	0.750093464643799	0.901576629816678
Merged-chr7-83720481-4	chr7	83720353	83720553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 2 of 18)	intron (NM_001360088, intron 2 of 18)	11945.0	NM_001360087	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	5.31250234063544	5.03679974842379	5.09950700756604	5.10874662121847	5.91022573079369	5.88226577462582	6.13592937346051	5.96442320385834	1.41893404470648	9.28599736063408e-08	4.00101698627466e-06
Merged-chr3-96251932-4	chr3	96251852	96252052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5252.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	5.3415524150978	5.09525242455225	5.09856195986522	5.49227131936429	4.95028388336602	5.13311069323986	5.25945887998106	4.91513188155272	-0.404862098780333	0.201350807863269	0.50368837959161
Merged-chr8-25603542-4	chr8	25603506	25603706	+	944.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001735, intron 1 of 9)	intron (NM_001001735, intron 1 of 9)	1322.0	NM_001308482	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	4.22794169433428	3.74368203437957	4.3129099110164	4.19149201000478	4.25146963550009	4.0590460805647	4.25201414196998	4.22594527087827	0.166233398196098	0.69473185794309	0.876091214911152
Merged-chr9-57585164-4	chr9	57585060	57585260	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022813, intron 7 of 8)	RSINE1|SINE|B4	-4292.0	NM_027895	71742.0	Mm.155877	NM_027895	ENSMUSG00000032308	Ulk3	1200015E14Rik	unc-51-like kinase 3	protein-coding	4.86613221228049	5.09587124471087	5.34294752985145	5.56300033715304	5.34732288640373	4.9203153408955	5.06809193363193	5.54752668754313	-0.0211522620934664	0.951369716796041	0.98270973416862
Merged-chr6-122811018-4	chr6	122810941	122811141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9143.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	8.75475435600368	9.02260648937061	9.06888783718945	8.83372723315319	9.03849603454182	9.04462300973119	9.19660278023778	8.86897103293972	0.146029304118672	0.352482028267424	0.659568292805988
Merged-chr1-131967439-3	chr1	131967335	131967535	+	770.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177628, intron 1 of 4)	intron (NM_001177628, intron 1 of 4)	-3174.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	4.37250511815542	3.53965365041301	3.83439020482602	4.02158696120419	3.52745995244545	3.53130849299998	3.81825437806775	4.10926569812029	-0.585847910744576	0.267984632225889	0.579836402626579
Merged-chr19-6907773-4	chr19	6907648	6907848	+	987.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012021, intron 2 of 5)	intron (NM_012021, intron 2 of 5)	-1950.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	5.1449838104672	5.62515350188852	5.00296158144172	4.9007733505192	5.41771781857955	5.7676527361937	4.97895576941953	5.23988787599532	0.335822730056932	0.341799563408856	0.650755862859763
Merged-chr3-65396983-4	chr3	65396887	65397087	+	831.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4434.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	3.8773862205073	3.73400518260576	3.87792597107817	4.07401658058881	4.35916626433782	3.82916670848589	4.26053847883337	3.87574297277747	0.542330808663898	0.236714627484594	0.546714574657013
Merged-chr4-83322954-3	chr4	83322850	83323050	+	861.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	intron (NM_027238, intron 1 of 19)	1239.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	3.04132542780406	3.09151904472968	3.10095589416956	3.1389766266532	3.07736391454534	3.02160078290676	2.76703793191178	3.26183291521948	-0.205469842424658	0.730075556038915	0.892887422737009
Merged-chr3-16181413-4	chr3	16181319	16181519	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-1746.0	NM_001358043	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	5.98686515705337	5.93258120875698	5.88747056156121	6.13443838843662	5.14076201267952	5.20705500466316	5.07678558415356	5.09800967670247	-1.50284700068291	4.78590818374421e-08	2.19920050749341e-06
Merged-chr4-63215363-4	chr4	63215277	63215477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025685)	promoter-TSS (NM_025685)	-35.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	4.99868449050333	4.86241133815109	4.70507661495965	4.99847243602635	4.79761892448418	4.8810771580022	4.90832020214414	5.06010312855697	0.0100088213469885	0.975417147171337	0.991307820304815
Merged-chr12-21462824-4	chr12	21462707	21462907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45371.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	4.95587431073306	4.99454595824284	5.10020492683729	5.48522963119334	5.47607428047827	5.16927716043157	5.17365812053127	5.50226230054594	0.310660352661735	0.342002333593371	0.650969323021991
Merged-chr6-72201018-3	chr6	72200915	72201115	+	730.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34562.0	NM_153778	71093.0	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	3.48064625652474	3.25657210668402	3.4296846675559	3.43548943984184	3.31131871492137	3.37216607710045	3.24954792126331	3.25931649737938	-0.379353748724024	0.46597726589721	0.74626088086293
Merged-chr1-105781052-3	chr1	105780982	105781182	+	880.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	359.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	3.4580410161771	3.68796396248144	3.71806549331825	3.47544353710955	3.68370576165752	3.38569621214812	3.38765847511341	3.5128908773951	-0.255318848366887	0.613949471302005	0.833604331777153
Merged-chr18-64594083-3	chr18	64593964	64594164	+	998.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001488, intron 2 of 27)	MTEa|LTR|ERVL-MaLR	66936.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	4.20458552255733	4.40161809270885	4.16773649785261	4.09012177518936	3.01209837193901	3.15192408334426	3.10666109777406	3.19394089785255	-5.1033246389912	3.49399889958656e-08	1.66465426823074e-06
Merged-chr2-152363605-4	chr2	152363488	152363688	+	937.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033505, intron 2 of 4)	intron (NR_033505, intron 2 of 4)	12978.0	NM_001009948	228777.0	Mm.330667	NM_001009948	ENSMUSG00000059361	Nrsn2	Gm123|Neurensin-2	neurensin 2	protein-coding	4.76924331479217	5.05225202636703	4.38523397878396	4.73593135287754	4.51199299521503	4.94233479390123	4.63240799001931	4.83863488157145	-0.0540225347714788	0.883919794937802	0.956367776063247
Merged-chr13-32903433-4	chr13	32903329	32903529	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	-5289.0	NM_173051	380839.0	Mm.250802	NM_173051	ENSMUSG00000079049	Serpinb1c	EIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1c	protein-coding	5.10608272369155	4.81407654813509	5.03945762833058	4.91085553908102	5.2867335458604	5.10760247992493	5.42227946183447	5.19829322292951	0.563651532592458	0.062694110630368	0.265313140750176
Merged-chr14-18271146-4	chr14	18271044	18271244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316711)	promoter-TSS (NM_001316711)	8.0	NM_023526	69721.0	Mm.25648	NM_023526	ENSMUSG00000021772	Nkiras1	2400004O09Rik|KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras-like protein 1	protein-coding	9.14810125858322	9.03426239670692	9.13030359138003	9.29382804879042	8.91626729253845	9.11321751884381	9.20088784696911	8.89542387099696	-0.150889186986573	0.325869786811378	0.637402735791346
Merged-chr12-86888776-5	chr12	86888691	86888891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CGGG)n|Simple_repeat|Simple_repeat	-3977.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	6.39179910590653	6.21339900488676	6.35815976813583	5.81784867611342	6.21487485094023	6.53342960670694	6.25335637360932	6.47121665251859	0.264045492544227	0.297319713504345	0.60941334041274
Merged-chr12-54794036-3	chr12	54793946	54794146	+	701.972229	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_026998, intron 2 of 13)	B3A|SINE|B2	1616.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	3.71164497840953	3.88613771107421	3.98684740240033	3.673828660128	3.52029969743233	3.26021295632315	3.53558056993575	3.76007495731133	-0.891498488035331	0.0802391469578634	0.30702839701719
Merged-chr11-21033047-3	chr11	21032942	21033142	+	868.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-58282.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	3.80797451862396	3.82167645313389	3.94562814394583	3.51012589159831	4.02848272114964	3.52924648047942	3.69267770933287	3.53846713586102	-0.13540551097732	0.789243807947457	0.918354557737069
Merged-chr12-8674134-4	chr12	8674004	8674204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160219)	promoter-TSS (NM_001160219)	-30.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	7.65400770234806	7.98013222206279	7.5180801598042	7.87809125149896	7.88433977937693	7.90844812228327	8.02066647488702	7.79705345863323	0.164013664057112	0.364690617259811	0.669460050185328
Merged-chr13-85207719-3	chr13	85207623	85207823	+	797.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023243, intron 6 of 8)	intron (NM_023243, intron 6 of 8)	18338.0	NM_023243	66671.0	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	3.46181804622283	3.61401777970954	3.57256819545974	3.49525545276646	3.55815565603754	3.32093851691255	3.60938033195022	3.71970749719739	0.0855626228613352	0.862055324954759	0.947936227886533
Merged-chr15-3202449-3	chr15	3202350	3202550	+	783.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68317.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	3.65208135436794	3.54098461400617	3.15761236840096	3.2913450558169	3.36425816279788	3.33495743251323	3.44176711080366	3.2834516257539	-0.216535134641625	0.686693797225705	0.871874882587332
Merged-chr3-65905780-3	chr3	65905676	65905876	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52473.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	3.90332094772413	3.66117096245421	4.16758008531949	3.90301259488379	3.73896718151374	3.92261210388116	3.78692526350702	3.90157618633231	-0.232274524845895	0.608695150783456	0.830738047659156
Merged-chr6-91878027-4	chr6	91877983	91878183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172730)	promoter-TSS (NM_172730)	30.0	NM_172730	232236.0	Mm.234879	NM_172730	ENSMUSG00000034083	Ccdc174	C130022K22Rik	coiled-coil domain containing 174	protein-coding	7.4052431817488	7.74747869757115	7.47397600215588	7.44974422790734	7.43626610854376	7.60308924313867	7.20219336846768	7.41123877509496	-0.14187169736676	0.453196958251235	0.737361851772988
Merged-chr4-133941659-4	chr4	133941558	133941758	+	976.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26333.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	6.1052533541928	6.3542291736408	5.99056310818005	6.03233332397984	5.33152753155985	5.49355589768635	5.14146628968459	5.20078186858062	-1.3889916213215	4.61278835371366e-07	1.72353628466659e-05
Merged-chr6-71493932-4	chr6	71493839	71494039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308303)	promoter-TSS (NM_001308303)	62.0	NM_001308303	22644.0	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	6.87117441254381	7.11979405665626	6.99016013962267	7.13411874374226	6.93977920939258	6.72380933834669	7.00366102599916	6.92119856003666	-0.190389707567875	0.331136821478619	0.642321510179223
Merged-chr1-37998062-4	chr1	37997967	37998167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198303)	promoter-TSS (NM_198303)	57.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	6.12573170358788	6.04721239089045	6.02156476818896	6.04796880551459	6.23830015748865	5.95893082968441	6.33256788425503	6.12243715727718	0.179956286501675	0.438423688884454	0.726385226396654
Merged-chr5-67821040-3	chr5	67820928	67821128	+	931.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	26403.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	3.62657564331067	3.67809023450503	3.92355589526834	3.63984985419739	3.62933125681049	3.4993527259761	3.49834434427769	4.08549059107109	-0.0494552502032735	0.921281528822064	0.970833179463265
Merged-chr8-69089510-4	chr8	69089397	69089597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153054)	promoter-TSS (NM_153054)	-275.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	5.27554081198618	5.73354700055171	5.55987438918115	5.4767142817708	5.35273441613242	5.28509817956907	5.31199002958737	5.17392250697556	-0.418884658780412	0.145502711763762	0.425083628330028
Merged-chr11-68853170-4	chr11	68853057	68853257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023668)	promoter-TSS (NM_023668)	-26.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	8.45703480160627	8.69661975725526	8.24837633230316	7.95911998679949	8.41476518018881	8.48348692706179	8.28892299528455	8.20727209276859	-0.0133711337275149	0.946479976152698	0.980920139816526
Merged-chr12-117832361-4	chr12	117832263	117832463	+	907.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-11498.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	4.67809333155557	4.66088068702012	4.64143345953708	4.81702572086052	4.36424005886878	4.31881160040681	4.6196528321778	4.4767965859356	-0.585720295873931	0.10302869817284	0.352537465512136
Merged-chr1-60652765-4	chr1	60652699	60652899	+	920.9464109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86034.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	3.67997007817414	3.68630869351641	4.48980530705803	3.68847110426694	3.58494025441411	3.85774937107094	3.60880952455113	3.62081219422191	-0.756607235247137	0.15049869201322	0.433182968396867
Merged-chr2-180041776-3	chr2	180041685	180041885	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178750)	promoter-TSS (NM_178750)	679.0	NM_001289476	26444.0	Mm.21728	NM_011969	ENSMUSG00000027566	Psma7	C6-I	proteasome (prosome, macropain) subunit, alpha type 7	protein-coding	4.58879246392955	4.0983566375337	4.22656974934965	4.50421131061181	4.19557392828049	4.203641023279	4.06180051211096	4.51447806303594	-0.294151379807014	0.477136221677901	0.753340116295003
Merged-chr2-116932454-4	chr2	116932364	116932564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32312.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	7.498759598017	7.46633453422453	7.77461072870446	7.50743234169163	7.48096336902026	7.52946192178113	7.6032651194646	7.38812651406322	-0.0811932473093047	0.647509918544643	0.851667779256884
Merged-chr2-91650107-4	chr2	91649995	91650195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033451)	promoter-TSS (NM_001033451)	-23.0	NR_027372	228359.0	Mm.22413	NM_146124	ENSMUSG00000027247	Arhgap1	B230365D05Rik|C76222|Cdc42GAP|p50rhoGAP	Rho GTPase activating protein 1	protein-coding	7.68240738829031	7.61073847871102	7.36030728804667	7.48185890512628	7.73843483662972	7.79398299964742	7.52697949742178	7.63708569349066	0.186691553161197	0.291360278820832	0.603659824950895
Merged-chr11-77763286-4	chr11	77763223	77763423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-13912.0	NM_001291213	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	6.19490770371057	6.25861151641302	5.84015179875672	5.89192791257929	6.01893032236193	5.91667111172141	5.51428491254493	5.88343704577258	-0.31772105638276	0.236557397854392	0.546577661329488
Merged-chr10-119051934-4	chr10	119051840	119052040	+	876.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1441.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	4.72712161089829	4.35401386662535	4.51651278593726	4.33727579227999	4.07109635490405	4.0101520681328	4.37560213739016	4.47457961324495	-0.574007159612007	0.160466072657162	0.448621443584546
Merged-chr4-130790375-4	chr4	130790260	130790460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2177.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	6.15155800002241	6.40745510039739	6.15264484170389	6.19312306889559	6.15603319624108	6.34799023997198	6.14109348503509	5.90455883209999	-0.13125124314175	0.578773401090135	0.814949494890204
Merged-chr11-84828385-4	chr11	84828306	84828506	+	932.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046281)	promoter-TSS (NR_046281)	597.0	NM_177564	192970.0	Mm.192213	NM_177564	ENSMUSG00000034449	Dhrs11	-	dehydrogenase/reductase (SDR family) member 11	protein-coding	3.64405589798457	3.8133175980115	3.75011827665665	3.6386009385665	3.89746036250098	3.51841479714477	3.5750017513216	3.93564792070726	0.126640354185289	0.790276082903475	0.918828686312538
Merged-chr9-14842596-4	chr9	14842506	14842706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17604.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	6.67404422268873	6.65194594237362	6.78962732047527	6.82879944776143	6.37632755321239	6.47181507060501	6.94409013974801	6.44126597213426	-0.240851365579911	0.288880594382209	0.600830781273742
Merged-chr11-117947162-1	chr11	117947062	117947262	+	1000.0	f0_c57.idr	Intergenic	Intergenic	22204.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	5.57748081386439	5.70872581154651	4.86584429884665	5.02424019798878	5.86390670431669	5.80333867865153	5.57571541347307	5.52129395051585	0.629678273178138	0.0561563892088421	0.248039443220364
Merged-chr14-76909725-3	chr14	76909645	76909845	+	879.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126872.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	3.65323244993765	3.24554864455768	3.15203798366312	3.51565433933254	2.9312243962103	3.06322159561039	3.14078965331077	2.95243964093206	-1.56011947101562	0.00986268409603171	0.0781233019442957
Merged-chr15-99093455-4	chr15	99093355	99093555	+	990.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5727.0	NM_001024702	239659.0	Mm.309917	NM_001024702	ENSMUSG00000001076	C1ql4	C1qtnf11|CTRP11	complement component 1, q subcomponent-like 4	protein-coding	4.82694000290598	5.11361867636992	4.68304295708901	4.49733402304006	4.69164296364054	4.24552876311594	4.8701385389227	4.2268388229054	-0.534941480176478	0.19366050422989	0.49380480138203
Merged-chr1-161896256-4	chr1	161896164	161896364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19582.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	6.10333013062139	5.71187433833831	5.54323802069133	6.07440885136335	6.39494697376952	6.71027923537935	6.1331807890023	6.1799913084124	0.739683233003815	0.00698490119268085	0.0607797410750403
Merged-chr8-120668222-4	chr8	120668135	120668335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293559)	promoter-TSS (NM_001293559)	10.0	NM_009941	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	7.81357260868965	7.62187703838113	7.38485009516432	7.38466173654778	7.9748448482611	8.26387457323695	7.95297035902939	7.89737531852833	0.613928620897235	0.0011573237824146	0.0151345121272255
Merged-chr6-146617136-2	chr6	146617040	146617240	+	1000.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_026281, intron 6 of 11)	L1MC4|LINE|L1	17452.0	NM_026281	67623.0	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	4.91365945001558	4.64394082443136	4.76836240289308	5.08841588312136	3.22289475619437	3.65163991892819	3.50940258234987	3.51981207083545	-4.89574322942709	9.32503063820357e-12	8.43387999741667e-10
Merged-chr6-66849111-4	chr6	66849003	66849203	+	975.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43771.0	NM_001166720	546903.0	Mm.484975	NM_001166720	ENSMUSG00000093755	Vmn1r39	EG546903|Gm5993	vomeronasal 1 receptor 39	protein-coding	4.76129567397479	5.09848755207293	5.01322227233759	4.05694346070704	5.26583043947526	5.1201239802134	4.81562518592464	4.75891487541039	0.446180659355577	0.284251913296827	0.596212390359036
Merged-chr5-62753007-4	chr5	62752920	62753120	+	909.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	13157.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	4.7636529745179	4.68795825342127	4.90824611589767	5.45428200792821	4.86970779167062	4.39063446783368	4.53808373392523	4.72269579438272	-0.735880132033265	0.0636617746970103	0.267970518105174
Merged-chr11-76033981-4	chr11	76033883	76034083	+	814.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6201.0	NM_029658	76566.0	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	4.14971979702003	4.15195159357103	3.6979944696173	4.06554086010004	3.82528819908575	4.14001288333381	3.62400009951094	4.1047066791668	-0.259883786685114	0.576501652516312	0.813537096043984
Merged-chr1-23843973-3	chr1	23843887	23844087	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_110972)	TTS (NR_110972)	65749.0	NR_110972	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	3.60131547084608	3.39532178979482	3.753420256545	2.78960563038414	5.19992610884848	5.11518527333482	5.50113839984092	5.44605174470841	5.62337383986589	4.38871871637818e-26	3.15363479556445e-23
Merged-chr16-33833918-4	chr16	33833831	33834031	+	725.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	4266.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	4.46659277001202	4.20170628079521	4.21364394146775	4.06272200803413	4.20780088055915	4.24230607821806	4.36801151689296	4.46437310190664	0.221681217100383	0.575253614715987	0.812904050861013
Merged-chr18-12644379-4	chr18	12644275	12644475	+	839.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 1 of 13)	CpG	842.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	3.42231295306294	3.65189596349742	3.80424469554838	3.55171917006195	3.83487511284597	3.53776898434063	3.53032374699767	3.93571476862195	0.35380088570086	0.470477474126644	0.749204562516411
Merged-chr2-120559008-3	chr2	120558904	120559104	+	992.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011743, intron 1 of 21)	ORR1C2|LTR|ERVL-MaLR	4855.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	4.34326405118556	4.08383035946137	3.77371098883173	4.18723946517782	3.97350297150476	4.06399633529257	3.97640733006977	4.2622028557369	-0.119577223843483	0.78300795646346	0.915463993932762
Merged-chr1-178492662-3	chr1	178492578	178492778	+	876.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36447.0	NM_001161665	269152.0	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	3.32730707318029	3.05076636715698	3.48562160600836	3.35898628341409	3.02466553389414	3.44192695541169	3.2582295269744	3.32593220773336	-0.181224746049994	0.747082136154962	0.900397219210857
Merged-chr18-67931906-3	chr18	67931799	67931999	+	657.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1274.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	3.08941689899694	2.92943286794666	3.08982265438102	3.32788641100425	2.77709528986273	2.78530183011735	2.89073587999045	3.48861863735536	-0.389589508627844	0.561859148184237	0.805197960630704
Merged-chr2-150874736-4	chr2	150874639	150874839	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	29992.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	4.7932142357697	4.88062865687847	4.99759310705916	5.0654183165304	4.68095316120873	4.81264203778273	4.440161681599	4.54866831177745	-0.665623606095067	0.0528711952802258	0.239824038290287
Merged-chr6-39725554-4	chr6	39725453	39725653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139294)	promoter-TSS (NM_139294)	-90.0	NM_139294	109880.0	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	8.19768441983572	8.60307499734808	8.39171668975029	8.31935734000977	8.49325709269104	8.4125635792188	8.4141141244134	8.29351029019894	0.0262284082249497	0.872456101446769	0.952111996272531
Merged-chr19-41933384-4	chr19	41933287	41933487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164561)	promoter-TSS (NM_001164561)	-58.0	NM_001360679	74168.0	Mm.20387	NM_023740	ENSMUSG00000025157	Zdhhc16	1500015N03Rik|Aph2	zinc finger, DHHC domain containing 16	protein-coding	8.29232956847899	8.01915051632639	8.11837135761086	8.19228344052478	8.0424349848731	8.13553652902639	8.29747636363928	7.81718221277991	-0.0966669807822706	0.58045404938439	0.815718435955212
Merged-chr16-56028678-4	chr16	56028614	56028814	+	884.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356449, intron 1 of 5)	intron (NM_001356449, intron 1 of 5)	1003.0	NM_001356449	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	3.58811220310203	3.75382434425934	3.70561895954975	3.4953399362492	3.72880076921817	4.0835935281036	3.94176202901909	4.20664211681308	1.05434730619981	0.021903440529183	0.136115330314887
Merged-chr11-95832089-6	chr11	95832044	95832244	+	921.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153104)	TTS (NM_153104)	7644.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	3.47438250989523	3.72341016679427	3.92842641464794	3.57711195158977	3.62411093641458	3.46239794004126	3.57642449564526	3.79215225940651	-0.189853569280722	0.699712472500444	0.878897269268221
Merged-chr4-135314015-4	chr4	135313924	135314124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39190.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	7.99859150135451	8.11494179718287	7.56124314830679	7.58535817528443	7.9625147688435	8.08129246816852	7.70655687705024	7.80217239520654	0.0806358426998058	0.691842865649711	0.87467626526963
Merged-chr3-95509044-3	chr3	95508933	95509133	+	874.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007802, exon 8 of 8)	3' UTR (NM_007802, exon 8 of 8)	9823.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	4.10999681474362	3.93740379118774	4.19263451210859	4.27039190504664	3.63895781284109	3.71447547554147	3.64437712678492	3.7707269863165	-1.30702160674052	0.00414553293756212	0.0412288513291511
Merged-chr14-56903168-4	chr14	56903059	56903259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029498, exon 3 of 25)	exon (NM_029498, exon 3 of 25)	16316.0	NM_001360643	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	5.80936793017042	5.85599583292815	5.96922337622976	6.02958817573597	5.88202013977187	5.59729346418567	5.70671010870535	6.06714936020322	-0.155156812154804	0.545961228139539	0.796070433008526
Merged-chr4-43982540-4	chr4	43982441	43982641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001002787)	promoter-TSS (NM_001002787)	-963.0	NM_001002787	442829.0	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	6.94327687924988	6.73022945444419	6.38472631983513	6.30716270741844	6.90477602157431	6.70583558859136	6.96860917026735	6.55745411582435	0.274537003935978	0.256548817840848	0.568162252716061
Merged-chr11-24357534-3	chr11	24357412	24357612	+	943.64447	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124397.0	NR_045857	71316.0	Mm.79162	NR_045857	ENSMUSG00000086892	4933430M04Rik	-	RIKEN cDNA 4933430M04 gene	ncRNA	4.31602947634917	3.60463160503462	3.70453465388526	4.15553853766713	3.25573622188753	3.65693939969926	3.26539726650997	3.27413400284718	-2.00421770223622	0.000449671444001019	0.00708279790054183
Merged-chr16-37580103-4	chr16	37579991	37580191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013547)	promoter-TSS (NM_013547)	-62.0	NR_027778	15233.0	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding	5.38849113082951	5.36157946762026	5.41792069824941	5.39047666894113	5.56295383825932	5.31195307879694	5.36261313470113	5.23284419062213	-0.00772215437046686	0.978071920165135	0.992205923377531
Merged-chr7-130621420-4	chr7	130621310	130621510	+	831.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_206856, intron 2 of 20)	B4|SINE|B4	43926.0	NM_206856	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	3.38915607177873	4.07510275914966	3.83836081373302	3.46804544685798	3.71775383474562	3.75152043431337	3.72416748819136	3.6853726199482	0.00317738454461383	0.995014169899279	0.998190746524986
Merged-chr6-35252624-4	chr6	35252506	35252706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015608)	promoter-TSS (NR_015608)	-93.0	NR_015608	67705.0	Mm.228046	NR_015608	ENSMUSG00000073155	1810058I24Rik	AI414869|AI848234	RIKEN cDNA 1810058I24 gene	ncRNA	6.87294118861205	6.98469155745153	6.91505098169262	6.84954861579597	7.24090374809815	7.11840935844959	7.19702994701293	6.94975518674474	0.321269687667362	0.0900064095270917	0.327603598428168
Merged-chr2-160620974-2	chr2	160620874	160621074	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24923.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	3.44181146994047	3.46773112353959	3.55375624673715	3.27350292739155	3.59493868208643	3.72387138717298	3.42937189859601	3.65417407597248	0.584986623015768	0.235290930796542	0.545281407930165
Merged-chr5-122050567-4	chr5	122050472	122050672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001312908)	promoter-TSS (NM_001312908)	-721.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	5.00391902967263	5.74109880526888	5.21719694265853	5.33231572909316	5.37070434904251	5.3927280677395	5.37242264239848	5.27724388905158	-0.00703847095014938	0.98190613252608	0.993533343858554
Merged-chr4-62348353-7	chr4	62348269	62348469	+	932.6904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 2 of 27)	intron (NM_001355385, intron 2 of 27)	12227.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	3.95115540971652	4.28424001577472	3.95173467600985	3.66179836998016	3.91741107356715	4.21296112575878	3.72783001217362	3.84837652948369	-0.103803062786611	0.827041944752706	0.933671983910433
Merged-chr19-6908395-4	chr19	6908335	6908535	+	870.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012021, intron 1 of 5)	intron (NM_012021, intron 1 of 5)	-1263.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	3.57098513238163	3.85865974136529	3.45316033784319	3.03547028307263	3.83768044886112	3.63235374817663	3.61199739435935	3.95719547335142	0.797320878349562	0.147523463406577	0.428647287497111
Merged-chr14-52014122-6	chr14	52014064	52014264	+	805.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027248, intron 1 of 4)	intron (NM_027248, intron 1 of 4)	394.0	NM_001253695	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	4.0988083697565	3.59224731073229	4.13868898260806	3.80248404774492	3.73077045710252	3.40934729003303	3.76795038702172	3.61831840450019	-0.823048547691335	0.102110269600288	0.350811863834884
Merged-chr9-22307041-2	chr9	22306941	22307141	+	876.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145612, intron 1 of 7)	intron (NM_145612, intron 1 of 7)	597.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	2.41182050856152	2.41144244440461	2.55013196170407	2.43282210442659	2.38916598525101	2.65609224166109	2.77657611204026	2.61274799319732	0.850558604098109	0.214939494158077	0.520943309804269
Merged-chr19-32951005-4	chr19	32950903	32951103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	193426.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	6.38663325676332	6.26882950299867	6.26028997670422	6.4584499055184	6.3695247860676	6.16111379785359	6.33778004529289	6.29355019247094	-0.0851761736283398	0.699389259985027	0.878772573452614
Merged-chr1-55086578-3	chr1	55086507	55086707	+	895.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356512, intron 2 of 11)	intron (NM_001356512, intron 2 of 11)	1325.0	NM_010477	15510.0	Mm.1777	NM_010477	ENSMUSG00000025980	Hspd1	60kDa|CPN60|HSP-60|HSP-65|Hsp60	heat shock protein 1 (chaperonin)	protein-coding	3.28390851155159	3.26028153643963	3.38997911041017	3.37965594554568	3.28497175238842	3.15108583163076	2.9664952185352	3.10601470722324	-0.736719880780803	0.190003478110253	0.489103163231511
Merged-chr8-105546663-3	chr8	105546552	105546752	+	665.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	19412.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	2.96512120006748	2.81272553694602	2.90653618573977	3.03311659868983	2.78508726047116	2.95055777031796	2.77159897331436	2.90510385891229	-0.384986439159222	0.52798086442842	0.784657061262147
Merged-chr9-119979110-3	chr9	119979015	119979215	+	771.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153287, intron 1 of 4)	L2|LINE|L2	3908.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	3.69277187908617	3.50071226650092	3.44363058584012	3.40957404044653	3.59316704581593	3.24410222020523	3.31651389492577	3.32658394323715	-0.422154444531016	0.424251840043856	0.716085736115701
Merged-chr5-34542427-2	chr5	34542327	34542527	+	911.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145858)	promoter-TSS (NM_001145858)	-938.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	2.75124237518088	2.78550833456359	2.60965064110567	2.96204264866387	2.79398584520459	2.92385234254927	2.98433430894429	3.04902126617855	0.634071236859331	0.322461452665325	0.633958948743686
Merged-chr10-51405340-4	chr10	51405262	51405462	+	915.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75250.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	4.72912417002527	4.71603496247116	4.38369322930299	4.9673218753633	4.57579329635806	4.61098341921339	4.97723579329378	4.87001584631881	0.0676135995039598	0.85505362014689	0.945424485789793
Merged-chr7-44005089-4	chr7	44004972	44005172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7606.0	NM_010644	16618.0	Mm.439663	NM_010644	ENSMUSG00000053719	Klk1b26	Egfbp2|Klk26|PRECE-2|mGK-26|mGK26	kallikrein 1-related petidase b26	protein-coding	6.47014731411787	6.91509168050177	6.78095555171148	6.95721238397407	5.9798305351546	5.81032521320901	6.1388535637386	6.22817360776866	-1.12255754822042	2.5600639760746e-06	8.1861093330195e-05
Merged-chr15-83122234-4	chr15	83122157	83122357	+	906.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358061, intron 1 of 3)	intron (NM_001358061, intron 1 of 3)	544.0	NM_001358061	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	4.60032098174809	5.09854714681907	4.72770391572562	4.70418667561535	5.03309122503687	5.0162898416089	4.89090488420627	4.87607532378589	0.328012711800976	0.327563408970742	0.639026279060025
Merged-chr17-81480547-4	chr17	81480450	81480650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	257837.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	6.25550202851209	6.38996371023544	6.93709224824047	6.75985969506983	6.57526021090443	6.49257791427054	6.26388230273181	6.14771846399906	-0.340582594234502	0.181246241951649	0.477758999217731
Merged-chr11-31902466-4	chr11	31902384	31902584	+	971.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290678, intron 2 of 7)	intron (NM_001290678, intron 2 of 7)	31544.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	5.07491276915726	5.11707521096552	4.82230209167245	4.9938248524378	5.37237032210673	4.78723354316358	5.28763306970123	4.93381458456246	0.236533215959943	0.475005452266975	0.752044421168891
Merged-chr11-55113680-4	chr11	55113578	55113778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010299)	TTS (NM_010299)	15693.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	7.98273403978794	7.90949194779207	8.20407033129779	8.29539753836848	7.83295061265145	7.9197842089101	8.08205833582105	7.89339983972173	-0.232798711884774	0.18488041792305	0.482566571028884
Merged-chr4-8911696-4	chr4	8911643	8911843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	160419.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	5.96605311179465	5.91952309016037	6.15749777866578	5.69261398024756	5.99916542338907	6.27263848372019	6.40468820631027	6.28339714913907	0.488208225938597	0.05234669887568	0.238327943792664
Merged-chr7-43994989-4	chr7	43994903	43995103	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010640)	promoter-TSS (NM_010640)	-874.0	NM_010640	16613.0	Mm.443378	NM_010640	ENSMUSG00000044485	Klk1b11	Klk11|mGK-11	kallikrein 1-related peptidase b11	protein-coding	5.42564085113222	5.67696131932444	5.98061456391565	5.09570286902901	5.44687817972649	5.24113695768085	5.1799546159755	5.63574732090901	-0.316018120793707	0.345383714587439	0.653728716702946
Merged-chr5-74260562-3	chr5	74260470	74260670	+	994.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	65244.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	4.390834462458	4.25428897946366	4.88813308361284	4.78201930833646	3.44374781981094	3.39317603529754	3.41758934128665	3.5016965986003	-3.74537267345412	6.69320051743124e-10	4.45247962271251e-08
Merged-chr18-70472457-4	chr18	70472355	70472555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289649)	promoter-TSS (NM_001289649)	1.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	7.38718513843066	7.62190173238321	7.18415005267189	7.41888568290572	7.3631829056744	7.25222086416691	7.5094938953535	7.44145922093684	-0.0277167042063843	0.882399473145432	0.955739186192595
Merged-chr2-91727165-4	chr2	91727003	91727203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3035.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	4.77728302094624	5.01086053294061	4.49291936065634	4.84502536772333	4.62767906700724	4.71234843836085	4.64156618370557	4.88016685112451	-0.181990245621915	0.602875033454422	0.827863197473409
Merged-chr12-10390793-4	chr12	10390681	10390881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023697)	promoter-TSS (NM_023697)	1.0	NM_023697	105014.0	Mm.119343	NM_023697	ENSMUSG00000020621	Rdh14	3110030G19Rik|AW215439|PAN2	retinol dehydrogenase 14 (all-trans and 9-cis)	protein-coding	8.31696483448151	8.32349232698826	8.65028590113268	8.60043883642182	8.35074799629012	8.18656656710136	8.48945423682454	8.30163833943364	-0.185909337829901	0.269517107734707	0.581238507864386
Merged-chr15-102617818-4	chr15	102617689	102617889	+	931.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310067, intron 1 of 11)	intron (NM_001310067, intron 1 of 11)	7675.0	NM_001310070	223922.0	Mm.208714	NM_146065	ENSMUSG00000099083	Atf7	1110012F10Rik|9430065F09Rik|AI549878|C130020M04Rik	activating transcription factor 7	protein-coding	4.10299127717403	4.11337976906782	4.05230491595441	4.35849318535884	4.42806620280835	4.58321929870695	4.08648882301569	4.33063405798247	0.46285207150849	0.258782399191777	0.570557316072094
Merged-chr6-73010216-4	chr6	73010096	73010296	+	855.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51448.0	NM_001190327	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	3.93688576701873	3.742180212441	4.12480490165567	4.15511454390241	3.92375886943372	4.00719882585577	3.97007798654556	4.1222214320117	-0.0119618960306808	0.978077904330718	0.992205923377531
Merged-chr7-115217017-4	chr7	115216950	115217150	+	946.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	265776.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	4.73847729127157	4.94951129606261	5.1583200721605	5.15629819895913	4.98487044032382	4.83249300340605	5.13274631318282	4.77680074097529	-0.156285799476606	0.636802349049461	0.846457532409411
Merged-chr8-84068836-4	chr8	84068730	84068930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	1994.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	5.27175056847237	5.42231776205678	4.91775824408943	5.54424571996687	5.39008472689012	5.38408545244623	5.33574639081976	5.29962593949145	0.042496795152537	0.889643774270904	0.9586114355389
Merged-chr5-30961525-7	chr5	30961416	30961616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-1189.0	NM_016703	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	4.53624097351238	4.6173735527995	4.57863378323418	4.44426077196099	4.63178179612323	4.58191340592935	4.12904814682106	5.2784586880983	0.385465043343455	0.359651736553212	0.665443059431823
Merged-chr9-61369031-3	chr9	61368926	61369126	+	908.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3340.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	3.74545569961205	3.89833844163869	3.57512584780986	3.39428323195091	4.07341583482407	3.97045877656177	3.73077207985352	3.94127781266252	0.82611724254582	0.081341779127851	0.309417833291006
Merged-chr14-36937573-1	chr14	36937473	36937673	+	550.0	f0_balb.idr	intron (NM_027045, intron 3 of 10)	intron (NM_027045, intron 3 of 10)	-2005.0	NM_028407	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	3.51425732965277	3.13632170152123	3.3580278070592	3.2787629507333	3.69660798768375	3.15541239717786	3.10458723213433	3.35619897811678	0.12534535445093	0.827615484722236	0.933903677361406
Merged-chr14-22847487-2	chr14	22847387	22847587	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 6 of 6)	intron (NM_028275, intron 6 of 6)	247084.0	NR_033550	791307.0	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	-	predicted gene 10248	ncRNA	3.8535570438039	3.47269117154548	3.85415329209884	3.68119413201507	3.45285169650187	3.40491446035801	3.9240605281636	3.65471854923003	-0.298522596833723	0.556178108424534	0.801835080198288
Merged-chr16-31926785-4	chr16	31926699	31926899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_LTR|LTR|ERV1	-7052.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	7.71708742000802	8.53470273915016	8.0006975779074	7.10118931868042	8.07203526545807	8.17851024017275	7.79953939865938	7.65340950478081	0.00457020897973561	0.987122768778935	0.995258250959001
Merged-chr14-121997017-4	chr14	121996919	121997119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 7 of 8)	intron (NM_026861, intron 7 of 8)	-31826.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	6.92731471819046	6.74734003024734	7.24443944246653	7.70523586176216	6.81223837753562	6.7916080498265	7.11175406057759	6.79784774104224	-0.467365044199026	0.0712569248738551	0.286424026180039
Merged-chr1-155159213-3	chr1	155159130	155159330	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021433, intron 1 of 7)	CpG	527.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	4.54547667022204	4.71377433404571	4.26583574444556	4.21218843579155	4.87881221556319	4.67902194671963	4.85365735371314	4.77335141682914	0.789687159463307	0.030268416639909	0.168247459980544
Merged-chr6-116123041-4	chr6	116122920	116123120	+	986.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	MERVL_2A-int|LTR|ERVL	70354.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	5.27265590561998	5.49325808317931	5.10638869266018	5.6296566442996	5.33576941109719	5.41671958171087	5.75382704184645	5.10305177444235	0.0268640132759469	0.932758494321675	0.975757811872694
Merged-chr13-101842096-4	chr13	101841954	101842154	+	878.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73837.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	3.37664923084365	3.33268408514874	3.61383939969006	2.95312513237001	3.11212351398155	2.90691500568981	3.25539058689018	3.08465611000883	-0.908302450739585	0.140467029857602	0.416760118470072
Merged-chr1-191023334-4	chr1	191023241	191023441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081259, intron 1 of 9)	L2b|LINE|L2	-2010.0	NR_027298	100125339.0	Mm.472263	NR_027298	ENSMUSG00000097845	A230020J21Rik	-	RIKEN cDNA A230020J21 gene	ncRNA	5.43531901326825	5.74682389517255	5.37599773625209	5.83942661763422	5.76318258224803	5.28293833392147	5.46632304147316	5.46153722191784	-0.193289430757889	0.515228830885067	0.777425072680732
Merged-chr10-117435599-4	chr10	117435479	117435679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11856.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	6.76679365914373	6.94748411032786	6.52819967870742	6.75958242719787	7.01493827684078	6.9153446055007	6.97053508483521	6.900818594575	0.268445582879446	0.179806629382659	0.476066504740569
Merged-chr12-86924019-4	chr12	86923925	86924125	+	818.766663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23016.0	NM_001289431	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	3.91288382552227	3.95135783102376	4.11493010464053	4.18393144476187	4.31082940374645	4.03535523181952	4.09716600139964	4.36489607903002	0.402705977828528	0.33331413668508	0.644122458951585
Merged-chr4-137968404-2	chr4	137968297	137968497	+	768.833374	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-25059.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	3.51574271724288	3.38274492072527	3.27820515346657	2.96173913197288	3.66424749166391	3.79072755366325	3.50174839033659	3.61862466414774	1.22541812148797	0.0220347215531298	0.136692473891426
Merged-chr2-155472894-4	chr2	155472797	155472997	+	979.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32114.0	NM_019825	56406.0	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	5.34510537679208	4.91405850924304	4.9153731269389	5.1663186602988	4.82626691028644	4.9771025580554	4.85512220195197	5.05072329838481	-0.342930152917839	0.289591011381198	0.601640308195974
Merged-chr10-21826084-4	chr10	21825978	21826178	+	768.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56106.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	3.80106532792217	4.00229458222488	3.95722488606407	3.8091189901271	4.04283949071575	4.07997929464832	3.67317329873614	4.25732238023665	0.37925684175437	0.394286324700749	0.693405798929549
Merged-chr11-17907058-4	chr11	17906965	17907165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46810.0	NM_026576	68145.0	Mm.178684	NM_026576	ENSMUSG00000016984	Etaa1	5730466H23Rik|AA672646	Ewing tumor-associated antigen 1	protein-coding	6.0843157045603	5.57009906680006	6.44330848358114	6.2670740323776	5.64663025789545	5.67236733018592	6.03426675674559	5.4560206118699	-0.659894832245737	0.0288906356288644	0.163334267864834
Merged-chr10-42003782-3	chr10	42003657	42003857	+	940.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 3 of 17)	CT-rich|Low_complexity|Low_complexity	14625.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	3.91869111344903	4.00216543606343	4.26048175533459	4.28488127139292	3.69311319286014	3.49983759208322	3.69296319028258	3.81526789983276	-1.3070005912741	0.00549056809053337	0.0509070139528559
Merged-chr11-102925189-4	chr11	102925086	102925286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197959)	promoter-TSS (NM_197959)	-62.0	NM_197959	70218.0	Mm.32084	NM_197959	ENSMUSG00000051378	Kif18b	3000004C01Rik	kinesin family member 18B	protein-coding	6.03143218755953	5.89581969312651	5.60974623100072	5.22802551724416	5.64931694584339	5.39039966530418	5.44271221400682	5.75516557874942	-0.237689139319841	0.449927070748275	0.734931131099492
Merged-chr2-73912439-2	chr2	73912339	73912539	+	913.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-1113.0	NM_001301722	228033.0	Mm.2966	NM_175015	ENSMUSG00000018770	Atp5g3	6030447M23	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)	protein-coding	2.83660325447767	2.57346616702863	2.64739469181006	2.64677817806491	2.58561431357715	3.00201958040096	2.76671565049989	2.77538393373074	0.527507794152076	0.416805676362705	0.710673328516556
Merged-chr6-51545412-4	chr6	51545299	51545499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 1 of 6)	intron (NM_001361577, intron 1 of 6)	106.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	7.30003814280015	7.36980357206041	7.07469341309554	7.20901833551763	7.52744153476695	7.43602176015094	7.24404500181036	6.92520665248014	0.0896364196655035	0.665373046579403	0.861367842469041
Merged-chr6-16855244-3	chr6	16855151	16855351	+	943.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 2 of 6)	intron (NM_031198, intron 2 of 6)	43190.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	3.92544340192107	3.92605525438458	3.72355780314556	4.00380855268573	3.85077654694412	3.99893668647956	3.5359307163628	3.72154291565726	-0.337529284527779	0.466480454471619	0.746420287776482
Merged-chr18-84355445-4	chr18	84355342	84355542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 4 of 8)	intron (NM_001033341, intron 4 of 8)	234062.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	6.47391589363648	6.36339644038373	6.58897269189869	6.68406077746242	6.30574895032496	6.50789528091837	6.68744360292535	6.56862838318908	-0.0361268828996104	0.870995079008937	0.951515750732959
Merged-chr5-99578908-4	chr5	99578805	99579005	+	940.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	150155.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	4.78043778359413	4.80740872679791	4.30869322799806	4.4597630988644	4.76702199932977	4.95249704781368	4.68495923653842	4.74158913108654	0.401598595553346	0.262355029087066	0.57420111356584
Merged-chr7-111014379-3	chr7	111014284	111014484	+	810.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14567.0	NM_009431	22083.0	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	3.73494820180545	3.49947331266396	3.53178613603164	3.46680934912091	3.64994787625305	3.46825957512447	3.46249962324071	3.68535040674518	0.0628809518137726	0.897600528046965	0.961755066043397
Merged-chr10-127535979-4	chr10	127535883	127536083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1424.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	5.53911295011916	6.06946346319967	5.75223393854635	5.28079058595711	5.61103992798172	5.50164947772461	5.74689561450478	6.27731591379311	0.218497156430849	0.502860186296787	0.770011596334387
Merged-chr14-21500673-4	chr14	21500576	21500776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017479, intron 1 of 16)	CpG	891.0	NM_017479	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	9.49424651610089	9.57109572404302	9.5604704355429	9.72397576369077	9.4977859866556	9.52972957807103	9.70648702494533	9.42711543850706	-0.0602505680894869	0.673675981892902	0.865848986388019
Merged-chr2-160361673-4	chr2	160361595	160361795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5370.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	6.21416541601198	6.13465246255635	6.47217202994	6.51635153422138	5.81598910189696	5.96890123981638	6.20214926973977	5.7857612270292	-0.623646843682042	0.0127726100478085	0.0939778385975773
Merged-chr2-169703158-4	chr2	169703040	169703240	+	923.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080455, intron 1 of 1)	B1F|SINE|Alu	69494.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	3.93152799617474	3.83432432322895	4.18423390861679	3.94793763214484	3.98624311419357	4.40172317865019	4.33511816316237	4.63786877885836	0.94544706589638	0.0276302032160962	0.158586389638524
Merged-chr1-90592973-3	chr1	90592896	90593096	+	820.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10429.0	NM_133805	108679.0	Mm.119177	NM_133805	ENSMUSG00000034432	Cops8	9430009J09Rik|AA408242|Csn8|Sgn8	COP9 signalosome subunit 8	protein-coding	3.48075872161448	3.15631708960201	3.14645492650504	3.25631079750232	3.26345122478618	3.25719901427201	3.2558465977728	3.42922289192683	0.137772056861476	0.796857862712814	0.921400074889298
Merged-chr18-20801764-4	chr18	20801669	20801869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55365.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	5.99365828831552	5.79011060832412	6.41466419434501	6.2638121317634	5.69024780665605	5.798165648095	5.8275193881104	6.09441286828628	-0.450955563395688	0.0946127743996923	0.336545254997827
Merged-chr6-113306614-4	chr6	113306540	113306740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282126)	promoter-TSS (NM_001282126)	-497.0	NM_030178	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	9.49772456848774	9.64743052925547	9.41807900264851	9.56500595443091	9.34196021600042	9.59337005320774	9.53225555298526	9.41244661610943	-0.0794784809479605	0.576421368127062	0.813520896079505
Merged-chr17-64609124-4	chr17	64609048	64609248	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	7499.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	5.22014318135873	5.40370512741473	5.31331392533531	5.50210293691905	4.90361285604179	5.19177194775335	5.57478832969952	5.11807478981712	-0.293790734821228	0.352906161465942	0.659789547882546
Merged-chr12-76324820-3	chr12	76324724	76324924	+	960.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101471)	promoter-TSS (NM_001101471)	-67.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	3.75938309291723	3.4692219521406	4.19250403769491	4.11142600545129	3.35327609162535	3.71427400996716	3.52270976322042	3.75772360359894	-0.986334736813	0.0619563933760674	0.263296145912079
Merged-chr4-106980744-3	chr4	106980677	106980877	+	902.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355532, intron 1 of 14)	intron (NM_001355532, intron 1 of 14)	57592.0	NM_001355532	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	3.13032148301773	3.28814503389354	3.27286975504647	3.44257181211708	3.8109643768102	3.63786981415087	3.92819633584037	3.86159778683056	1.63070086268112	0.00201437792360798	0.0235090024962276
Merged-chr11-60775108-4	chr11	60775016	60775216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009410, intron 1 of 18)	intron (NM_009410, intron 1 of 18)	2249.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	6.57140272487641	6.29890793105125	6.01866000598092	5.58046888977162	6.31484663844731	6.23745856123972	5.77641154555485	5.57811790798967	-0.218257560490699	0.503305503605327	0.770342596304131
Merged-chr18-67610938-4	chr18	67610831	67611031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	30424.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	6.33502822185667	5.51901463249002	5.91196370084035	5.95905765355673	5.85517991250119	6.31592287024299	6.05204260562297	5.59796043591333	0.0279047761281386	0.925539280886238	0.972503515835845
Merged-chr8-70551993-3	chr8	70551874	70552074	+	998.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	12299.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	4.34326368976871	4.45202397412451	4.25927740438158	4.78497895268426	3.93162550290735	3.91265868796441	4.00298190774247	3.96346972816983	-1.39110303638684	0.00118080178319845	0.0153604475776518
Merged-chr7-142390387-4	chr7	142390255	142390455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-2485.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	7.58230461040596	7.68985723614518	7.61676969969275	7.42876328992235	7.22736991499753	7.18458759052023	6.93063880660488	7.06636156612089	-0.626427445963077	0.000785381944934273	0.0110764219255947
Merged-chr12-35011693-3	chr12	35011597	35011797	+	941.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26936.0	NM_029294	75456.0	Mm.79179	NM_029294	ENSMUSG00000092305	Prps1l1	1700011K15Rik	phosphoribosyl pyrophosphate synthetase 1-like 1	protein-coding	4.18996068027456	3.97301942766511	4.06561449235507	4.05845514570787	3.66930699748852	3.94593891474863	3.70073743881948	3.65413141035503	-0.949152931192514	0.034714828004775	0.184441796114942
Merged-chr3-79161593-3	chr3	79161518	79161718	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15743.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	5.34791474262582	5.68923792619223	5.05571005924046	5.1783293367323	5.32366283140066	5.57879976312821	5.43254473300835	4.72212576526558	-0.0668753282741967	0.848086497127847	0.942612651933043
Merged-chr15-34043267-4	chr15	34043176	34043376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39443.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	5.25831156746144	5.36848276447254	5.38613277248442	5.33204011367041	5.67022842165333	5.6482114779864	5.74394237548916	5.60343190145251	0.570032661486676	0.0306117984716202	0.16951747685981
Merged-chr1-155391704-4	chr1	155391611	155391811	+	882.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 1 of 14)	MTEa|LTR|ERVL-MaLR	25733.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	4.12504601294052	3.70076447848628	3.89478393411557	4.12689592314492	3.88517214623698	3.59916912054983	4.14789671131418	3.98982715595449	-0.160363253234424	0.731848623822259	0.893842682027583
Merged-chr11-11836931-3	chr11	11836885	11837085	+	622.666687	f0_balb.idr|f1_balb.idr	intron (NM_016672, intron 8 of 14)	intron (NM_016672, intron 8 of 14)	-28023.0	NM_001163360	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	2.85168690454925	2.81067827900407	2.85203542466295	2.9408546799602	2.73413212258272	2.82949412915168	2.71726070430632	2.85062591445753	-0.409778060708246	0.506648796576527	0.772382009914734
Merged-chr13-5870516-4	chr13	5870419	5870619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011803)	TTS (NM_011803)	9030.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	6.87361146385381	7.09279487611477	6.68425041787868	6.66620462055927	7.11730541077688	7.19245179912777	7.12891179704098	6.64746093878389	0.284180082101367	0.20296501327391	0.50554655075354
Merged-chr2-106003285-4	chr2	106003178	106003378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033993, exon 1 of 4)	non-coding (NR_033993, exon 1 of 4)	271.0	NM_026992	99349.0	Mm.25661	NM_026992	ENSMUSG00000027166	Dnajc24	1700030A21Rik|2610027M02Rik|AV066965|AW240712|Dph4|MmDjC7|Zcsl3	DnaJ heat shock protein family (Hsp40) member C24	protein-coding	7.43668928546334	7.65381434923702	7.42796966141562	7.77148363551172	7.88841866397397	7.71107346830848	7.70755310982318	7.4228346768222	0.140948593473385	0.464442611107599	0.745452017408793
Merged-chr6-38982304-4	chr6	38982205	38982405	+	987.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 4 of 12)	MTD|LTR|ERVL-MaLR	63319.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	5.04444811235525	5.1277772877148	4.77661542015382	5.47351151786351	4.87679342936914	4.99763848789486	5.18197697182733	5.50107311366597	0.0130387273934651	0.970695247074973	0.989495522353561
Merged-chr3-135505664-2	chr3	135505564	135505764	+	887.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_027288, intron 1 of 16)	intron (NM_027288, intron 1 of 16)	20053.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	3.35397034427165	2.80228041817655	3.35448416038032	2.99028254255698	3.04546068922395	3.12453691579889	3.12566610184692	3.07557676944723	-0.18584111685622	0.758818949933454	0.905344944389167
Merged-chr16-11323519-4	chr16	11323424	11323624	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 1 of 20)	intron (NM_028964, intron 1 of 20)	620.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	3.39269400718382	3.47683723427664	3.33154455904459	3.72678836151589	3.43279563964801	3.56630624110013	3.6479998274462	3.66138740397951	0.222738295272748	0.664539574926355	0.861009602629657
Merged-chr1-64304217-4	chr1	64304130	64304330	+	872.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-182841.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	4.45671658729433	4.6161851553525	4.13638448395401	4.39315724795914	4.31644951233321	4.5023494147324	4.26519658783448	4.45455867426284	-0.0693097427509768	0.857013954538836	0.946159157665131
Merged-chr7-80696581-1	chr7	80696481	80696681	+	669.0	f0_c57.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-7704.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	3.19893345530219	3.26824060717844	2.79321070475398	2.53038180436792	3.07818923440057	3.53464571833655	3.0653465853607	3.41260676050424	1.14539329274232	0.0936377656170271	0.334750249505744
Merged-chr8-41319218-3	chr8	41319146	41319346	+	734.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 29 of 37)	intron (NM_023662, intron 29 of 37)	55451.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	2.90921257490839	2.82475298821819	2.74868110213406	2.49207619453559	3.75070855515958	3.36815365783109	3.76274625475823	3.51615958265691	3.95526833419695	1.33646080875244e-09	8.40352861362104e-08
Merged-chr4-62480615-5	chr4	62480510	62480710	+	958.2999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138653, intron 1 of 6)	intron (NM_138653, intron 1 of 6)	543.0	NM_138653	192120.0	Mm.29808	NM_138653	ENSMUSG00000028392	Bspry	-	B-box and SPRY domain containing	protein-coding	3.47008872713558	3.24643639455824	3.61976012277515	3.56248369561931	3.54254979071512	3.144798372474	3.34794929640951	3.29986816218609	-0.461930112005696	0.395782807305514	0.694767299033225
Merged-chr18-39572353-3	chr18	39572270	39572470	+	976.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-85125.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	3.37930474181672	3.61101781514543	3.31475054582445	4.10670267006772	3.44556100377271	3.49423536019982	3.54369975244008	3.89383271968198	-0.160570578359358	0.779983723495335	0.914273965875713
Merged-chr14-47445570-3	chr14	47445471	47445671	+	848.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26990.0	NR_027414	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	3.46081778578533	3.86871707868396	3.76986414294096	3.83620215250933	3.19868945746454	3.31872333071646	3.55817176807155	3.33806737796934	-1.34023250631116	0.0117065169164898	0.0882969341526788
Merged-chr11-121804840-1	chr11	121804740	121804940	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-25378.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	4.67493022021512	4.83387265611605	4.14797928645707	4.6946991270557	4.35073727592565	4.65416777609189	4.18366998160665	4.47839259153363	-0.439046617986765	0.274697984634655	0.586422385955434
Merged-chr12-51939862-4	chr12	51939748	51939948	+	950.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177171, intron 11 of 35)	intron (NM_177171, intron 11 of 35)	31473.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	4.60657505709311	4.48233901680857	4.64714109559023	5.19349506588427	4.5781512206029	4.30896024154269	4.73688145617695	4.64411105817368	-0.444296173864374	0.265186560142275	0.576956662317123
Merged-chr1-156467824-4	chr1	156467734	156467934	+	961.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	6494.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	5.42372436728043	4.64309111749884	5.17080193535376	5.30749832592607	5.3389264864822	5.03110373334753	4.83025941688549	5.13560965713829	-0.123536641677057	0.725739990928968	0.890921883682774
Merged-chr5-86066324-3	chr5	86066225	86066425	+	847.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007683)	promoter-TSS (NM_007683)	-742.0	NM_007683	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	3.69980723752192	3.36084390307855	3.53105366870529	3.8389189804129	3.83006720062832	3.76410240605927	3.92293350313772	3.84765035778437	0.613579791790254	0.207376922881796	0.511376476487211
Merged-chr11-5444975-4	chr11	5444864	5445064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080924)	promoter-TSS (NM_001080924)	-117.0	NM_001080924	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	7.81202802286105	7.75831968253644	7.27820687292856	7.03373597859174	8.27836079350763	8.00588170083455	7.94978348130376	7.62226047887375	0.632303552068083	0.00821770188931677	0.068396609305388
Merged-chr2-24385102-6	chr2	24385072	24385272	+	909.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177611)	promoter-TSS (NM_177611)	-160.0	NM_177611	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	3.63723339147922	3.06392920486945	3.6883677000742	3.40267151299579	3.65054832717576	3.58971049864105	3.67245701692196	3.78152401463991	0.672862870713678	0.202648996558947	0.505235585945418
Merged-chr2-166710066-4	chr2	166709961	166710161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	3771.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	6.88351005921565	6.65486499749543	6.75093790356157	6.65744188531354	6.74065458525831	6.66154132888579	6.53539037969913	6.37075801971944	-0.204023188466479	0.336517986170462	0.646470196956367
Merged-chr14-56571923-4	chr14	56571822	56572022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014996)	promoter-TSS (NM_001014996)	-76.0	NM_001014996	219103.0	Mm.212525	NM_001014996	ENSMUSG00000064128	Cenpj	4932437H03Rik|CPAP|Gm81|LAP|LIP1|Sas4	centromere protein J	protein-coding	8.24471926320645	7.99942457361237	7.76112641267607	8.12925612748268	8.15050786752001	8.00287136711427	7.98861642336778	7.92486065405987	-0.0338122871514097	0.847972260595914	0.942575428077716
Merged-chr1-162565175-4	chr1	162565067	162565267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-5348.0	NM_001356527	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	8.44046827232463	8.26771854510958	8.98717501940024	8.82018172240181	8.42084839369058	8.39093013595626	8.87424178082762	8.60686856563725	-0.094609008105556	0.651256824350155	0.853855396950078
Merged-chr11-100619144-4	chr11	100619061	100619261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019795, intron 1 of 13)	CpG	1007.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	6.0741993147794	6.35793235173403	6.15996761799899	5.98328953643665	6.30247822733773	6.29493580617965	6.49644113175328	6.3969197124404	0.349544532817621	0.128422777346883	0.398731926489329
Merged-chr8-11452781-4	chr8	11452680	11452880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25149.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	8.14176295541105	8.42624447030802	8.26601696438817	8.27476356250923	8.03647470571183	7.97589102299399	7.94077238656371	7.84838300553157	-0.420344600418158	0.00872489749773931	0.0715224552564305
Merged-chr10-41684790-3	chr10	41684689	41684889	+	876.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 4 of 47)	intron (NM_001358562, intron 4 of 47)	31674.0	NM_001358562	75973.0	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	3.03644296799238	3.11335885373911	3.03676357480946	3.35730355645129	3.22211899882389	3.21191923574884	3.26734476463401	3.52845919365998	0.571818312952848	0.317691884747512	0.629592752581639
Merged-chr4-136891988-6	chr4	136891947	136892147	+	923.9722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007574, intron 2 of 2)	MIRb|SINE|MIR	867.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	3.09358917787543	2.94002147679392	3.68239513823721	2.95279039040823	3.6564434628105	3.59716160356045	3.4062354671041	3.93643063644771	1.56457092023054	0.0096594185432558	0.0770275322082013
Merged-chr12-44266663-4	chr12	44266562	44266762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2492.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	5.73420576841549	6.29627322564668	6.05014046631236	5.31856885478585	6.76852055173926	6.49495041104977	6.25214568058526	5.67511365808377	0.71650324422121	0.0341233710941288	0.182391828538707
Merged-chr5-30650909-4	chr5	30650785	30650985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175675, intron 1 of 5)	intron (NM_175675, intron 1 of 5)	2946.0	NM_175675	74919.0	Mm.247985	NM_175675	ENSMUSG00000029175	Slc35f6	4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9	solute carrier family 35, member F6	protein-coding	7.84622147371852	7.94220589774066	8.25544019033794	8.15159339661283	7.7754505883236	7.58355470403372	7.74085519289524	7.58781815347816	-0.500161715455749	0.0050180345101286	0.0476874069955198
Merged-chr19-5841066-2	chr19	5840966	5841166	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	4412.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	3.46255789754145	3.9077403660354	3.62848687498374	3.25063250505851	3.44177617998366	3.74768941006014	3.26350565264668	3.67703616041078	-0.119375052916446	0.827410749374157	0.93381914867164
Merged-chr16-55892637-4	chr16	55892550	55892750	+	737.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134457, intron 1 of 5)	intron (NM_001134457, intron 1 of 5)	2629.0	NM_001134457	385658.0	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	3.9673206313683	3.81914370545256	4.20768666328667	4.25612483779224	4.21119922147442	4.09135347337804	3.89868334218118	4.54676082321136	0.319222896074505	0.475620342976924	0.752388549309966
Merged-chr17-45564414-4	chr17	45564319	45564519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357105, intron 1 of 3)	intron (NM_001357105, intron 1 of 3)	483.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	6.08260966467878	6.0843382337228	5.978029531141	5.65853566863675	6.2808745244063	6.03911099310177	6.07252495384857	5.78404316882803	0.186859031251344	0.478442878750446	0.754532850325209
Merged-chr4-125144393-4	chr4	125144304	125144504	+	932.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16523.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	4.44925111815512	4.70294002451553	4.15078342879638	4.75434692125392	4.80420427362662	4.7093546305472	4.67090872709756	4.53335368472747	0.287237596240888	0.452556465491628	0.736907471273024
Merged-chr7-102250230-3	chr7	102250145	102250345	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019566)	promoter-TSS (NM_019566)	-127.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	6.5421287493311	6.68454311615841	6.41999098104045	6.44316491303506	6.55422499283093	7.17724509587348	6.84494936684607	6.7818490168619	0.465083185410323	0.0407262069280122	0.204029250729037
Merged-chr11-120957959-4	chr11	120957853	120958053	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030696, exon 6 of 6)	exon (NM_030696, exon 6 of 6)	8886.0	NM_001038654	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	4.89609967800576	4.97795777065559	4.78278946417489	5.03037527097129	4.90201568879527	5.10578542708571	4.9093782218939	5.15599835645437	0.159744366270904	0.615320628152425	0.834420678451894
Merged-chr14-67098343-4	chr14	67098196	67098396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25825.0	NM_001205188	71978.0	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	5.02919156692872	4.86573057092617	5.15802377409159	4.84857668853582	4.97812053895097	5.26663026400275	5.16235182631347	4.88460795036158	0.20922533771389	0.512175018304177	0.775701492755237
Merged-chr15-73727579-1	chr15	73727479	73727679	+	801.0	f0_balb.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	2649.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	3.08357970387854	3.54282275599774	3.21092956921224	3.51955621718034	3.06540432960275	3.32220582896067	3.31379718087664	3.20935170406786	-0.501103349953041	0.378698038316014	0.681206663363546
Merged-chr14-122107052-4	chr14	122106976	122107176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015586)	promoter-TSS (NR_015586)	-6.0	NM_080556	68059.0	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	8.56786895262906	8.62066332450978	8.61136960294733	8.70635023300813	8.80468068990031	8.78450782784269	8.76743045961202	8.61046701893063	0.143259363066088	0.322523596432526	0.633993567259619
Merged-chr13-103921033-4	chr13	103920928	103921128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289474)	promoter-TSS (NM_001289474)	-442.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	5.78619851599113	5.5364109248991	6.0781425154284	5.87488464410905	5.67431665469575	5.55483593964127	5.66111566084581	5.37244193331074	-0.426109428555539	0.122158302855409	0.387327089801111
Merged-chr11-78095109-1	chr11	78095009	78095209	+	544.0	f0_balb.idr	intron (NM_145430, intron 1 of 2)	intron (NM_145430, intron 1 of 2)	436.0	NM_145430	216971.0	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	3.2269030093619	3.11571984222807	2.96918380214211	3.05328749066658	3.3422625828274	3.45411147223271	3.42773820735658	3.22562562211451	1.01905028290375	0.0578471848424547	0.252496206152953
Merged-chr4-142019437-4	chr4	142019366	142019566	+	863.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131014, intron 1 of 1)	MLT1K|LTR|ERVL-MaLR	1568.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	4.29434151330864	3.99455555659887	4.29500655847659	4.77262996659397	4.37337555611134	3.95213888091429	4.27577064018676	4.15505500523505	-0.443735006856073	0.323366355280458	0.634808698839089
Merged-chr7-116040262-3	chr7	116040144	116040344	+	911.488892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1500.0	NM_001025559	20679.0	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	3.52887501555715	3.34991765134499	3.93702658647236	3.73047840015289	3.51829916314484	3.20091310017151	3.5150759904704	3.08822035130299	-1.02202002335972	0.0769925491956824	0.299991934486505
Merged-chr15-98804313-4	chr15	98804250	98804450	+	816.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001013741, exon 2 of 2)	3' UTR (NM_001013741, exon 2 of 2)	3575.0	NM_001013741	13199.0	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	3.88168369387735	3.92058676607157	3.55992556517714	3.36722946680126	3.85981269993816	3.79604361363404	4.0404247701922	3.72888077561778	0.499989433415666	0.307801978160546	0.620167179614461
Merged-chr3-69634190-4	chr3	69634088	69634288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35228.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	6.38162685649055	6.69336152092229	6.93025444002574	6.95292163610699	6.35303403646431	6.38256825554164	6.38646118817599	6.45022985453692	-0.549440132223535	0.0161415440656682	0.110333599084305
Merged-chr7-104369940-4	chr7	104369851	104370051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11305.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	6.82113566862502	6.5527230794604	6.62905299917435	6.74500258131063	7.21786223500889	6.77384185072002	6.80131713215856	6.83118558743575	0.336934913790339	0.11812990529191	0.380170508884494
Merged-chr1-92972188-4	chr1	92972100	92972300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001104529)	promoter-TSS (NM_001104529)	-919.0	NM_001104529	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	8.33192258532138	7.70188001992417	8.61492618988332	8.6298060079552	7.97487789665827	7.8579490085064	8.31013209800922	8.13728384053446	-0.372230884150395	0.106108622943888	0.358934781509505
Merged-chr13-99353327-4	chr13	99353219	99353419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173757, intron 2 of 10)	intron (NM_173757, intron 2 of 10)	8533.0	NM_173757	218506.0	Mm.30208	NM_173757	ENSMUSG00000041632	Mrps27	2610028H14Rik	mitochondrial ribosomal protein S27	protein-coding	8.34283156943677	8.59459147549669	8.20537144104392	8.65915168644003	8.40463489005135	8.55976267323061	8.48301370046464	7.90470516657161	-0.135100548990526	0.499199609561032	0.768207716806231
Merged-chr1-183510950-4	chr1	183510844	183511044	+	949.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91696.0	NM_001308052	78772.0	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	5.17460525399506	5.092514764414	5.14516394567056	5.69592149544355	4.96525687041545	4.50354815057609	4.73071812800138	4.66374974994092	-1.13508779870075	0.00175736516124954	0.0211582366056463
Merged-chr13-104286499-3	chr13	104286398	104286598	+	739.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1337.0	NR_136938	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	3.58091707693204	3.30245102309389	3.35996219882129	3.71968643708744	3.3064991981192	3.41079991242687	3.6157903118185	3.57935420949711	-0.109148368906434	0.835857840969416	0.937525731479361
Merged-chr15-66818393-4	chr15	66818212	66818412	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	13517.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	3.0349045701105	2.99647481273476	3.42286104465248	3.22926530369082	2.84135171138481	3.20959740199973	3.08720654171106	3.26900856473613	-0.294917124019511	0.622439946488055	0.838382940565288
Merged-chr18-38576188-4	chr18	38576078	38576278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25090.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	5.21537470256619	5.00857480480338	5.39437572351806	5.26355130249064	5.25692634618297	5.42160299425613	5.47264045722775	5.11340374922061	0.169187944989463	0.569828832683473	0.809561615168898
Merged-chr7-130968688-4	chr7	130968593	130968793	+	964.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019564, intron 3 of 8)	intron (NM_019564, intron 3 of 8)	32490.0	NM_019564	56213.0	Mm.30156	NM_019564	ENSMUSG00000006205	Htra1	AI429470|HTRA|L56|Prss11|RSPP11	HtrA serine peptidase 1	protein-coding	4.94667784146999	4.50494138929966	4.94750199870842	4.83547698639289	5.12764355858482	5.32579567866569	5.40562693263737	5.47887871031563	0.981166830407787	0.00214682815238531	0.0247183890421602
Merged-chr6-128662393-1	chr6	128662293	128662493	+	629.0	f0_balb.idr	promoter-TSS (NM_053165)	promoter-TSS (NM_053165)	8.0	NM_053165	94071.0	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding	3.25663958493018	2.98480669245588	3.2044776694096	3.32822244967362	2.69550229136356	3.07853467958269	2.82564700837497	3.03055562333015	-1.26541874443363	0.0457410774074227	0.21931991571458
Merged-chr6-113377856-6	chr6	113377771	113377971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133932)	promoter-TSS (NM_133932)	-242.0	NM_026552	68089.0	Mm.289306	NM_026552	ENSMUSG00000079426	Arpc4	20kDa|5330419I20Rik|AI327076|p20-Arc	actin related protein 2/3 complex, subunit 4	protein-coding	6.95846378917767	7.06042836479702	6.83424440815825	6.73551760011445	7.27854438286196	7.64205161131853	7.25879617857735	7.23838507151833	0.63726865471642	0.00158878273550036	0.0195586244085403
Merged-chr15-98541171-4	chr15	98541041	98541241	+	939.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6872.0	NR_153345	69612.0	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	4.69566621139576	4.82888912696302	4.3706978041826	4.51192405917224	4.69054643868519	4.59078301125636	4.35161683954673	4.27207858589271	-0.255788791925326	0.504109472874472	0.770626277304553
Merged-chr3-135211968-4	chr3	135211796	135211996	+	887.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173762)	promoter-TSS (NM_173762)	-667.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	4.15581907632829	3.9445102689768	4.24446517470867	4.04213703952212	3.78750175522734	4.13663146279234	4.09211473327625	4.50829104231977	0.137701716926516	0.755735341593657	0.903923473017895
Merged-chr4-108369413-4	chr4	108369316	108369516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099303, intron 2 of 2)	intron (NM_001099303, intron 2 of 2)	14239.0	NM_001099303	545667.0	Mm.380025	NM_001099303	ENSMUSG00000059816	Fam159a	Shisal2a	family with sequence similarity 159, member A	protein-coding	6.95643911450702	6.90011971620911	6.90453860518734	7.45851943838001	6.96786228237676	6.87679830210833	7.2205965636615	6.92647505563188	-0.124960247004191	0.581871146653889	0.816420227529328
Merged-chr11-116490422-5	chr11	116490301	116490501	+	974.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026364)	promoter-TSS (NM_026364)	-55.0	NM_026364	67763.0	Mm.25125	NM_026364	ENSMUSG00000015869	Prpsap1	5730409F23Rik|PAP39	phosphoribosyl pyrophosphate synthetase-associated protein 1	protein-coding	5.34158791746108	5.81639737104904	5.34250306152247	5.34523908624946	5.19895802504555	5.79296155615336	5.43356732696254	5.51240755197414	0.0251453607020761	0.934902014395953	0.97635719558922
Merged-chr6-57706879-2	chr6	57706779	57706979	+	744.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133737, intron 1 of 8)	intron (NM_133737, intron 1 of 8)	4424.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	3.5884876790222	3.25948139949737	3.21386438598411	2.90268538923202	3.20468081100095	3.3894837307724	3.37417639830702	3.38621251672581	0.304200861872378	0.597187272155105	0.82517621232028
Merged-chr1-191313362-2	chr1	191313284	191313484	+	933.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025424, intron 1 of 3)	intron (NM_025424, intron 1 of 3)	4734.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	3.21392494918053	3.29093808752558	3.21433702559294	3.0471751699522	3.30067190797209	2.99606111699105	3.14417116691367	3.47055285206868	0.210808137523412	0.708408026109828	0.88284651634377
Merged-chr2-45196693-4	chr2	45196587	45196787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79245.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	6.65249229516286	6.64889835942618	6.74232945637191	6.77591717687823	6.7583196128402	6.48120048176147	6.73612425136246	6.60215628704417	-0.0779338063825937	0.702552619953887	0.880288258302449
Merged-chr12-100168802-4	chr12	100168714	100168914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9161.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	6.59283599335956	7.00603185082359	6.74206758044736	6.24470723213025	6.52732658836152	6.62052062938757	6.3937505169452	6.55745470373583	-0.201475770778218	0.416451033285144	0.710495148682995
Merged-chr5-25222905-4	chr5	25222847	25223047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144908)	promoter-TSS (NM_144908)	75.0	NM_144908	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	7.43047566931889	7.65169401940141	7.9222084426895	7.57730712018118	7.58567235489807	7.80657423141155	7.6916121217918	8.11938604303785	0.206554417234495	0.304603521354591	0.617129638753006
Merged-chr13-52624276-4	chr13	52624169	52624369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 6 of 13)	intron (NM_011518, intron 6 of 13)	27387.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	5.73965438702276	6.34728457841252	6.12243273420992	6.19586131136092	6.02020526719519	5.41998278470052	5.99078004090911	5.71014976599375	-0.487205442972281	0.0846646127034714	0.316617519128201
Merged-chr2-92056225-4	chr2	92056120	92056320	+	831.891663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32050.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	3.89668110657851	4.18055822370211	3.72883791782383	3.89970100552966	4.00957361566089	4.1218534264508	4.0289040838767	4.2590919134556	0.445423590124351	0.300299381078208	0.612422387893833
Merged-chr8-13758571-3	chr8	13758437	13758637	+	932.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357247, intron 1 of 16)	intron (NM_001357247, intron 1 of 16)	881.0	NM_001357247	69957.0	Mm.182412	NM_027276	ENSMUSG00000038416	Cdc16	2700071J12Rik|2810431D22Rik|APC6	CDC16 cell division cycle 16	protein-coding	3.76884927796867	3.43044382118624	3.66329293098055	4.01180671583921	3.6622824006375	3.53703434094773	4.10258054776648	3.81706030611342	0.141955080736818	0.782050886189078	0.915221466378159
Merged-chr16-77315452-4	chr16	77315353	77315553	+	806.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-13875.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	4.02744636329207	4.25716939118967	3.61692752607676	3.6875617456602	3.88524750009867	3.79517329660389	3.91976779142551	3.61509578486175	-0.306451100130386	0.530656128894878	0.786727470758962
Merged-chr4-139196700-4	chr4	139196590	139196790	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	2579.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	4.38733093238804	4.20493884992637	4.20864087164127	4.69103996209889	4.45809613110398	4.12450228028163	4.19077274900872	4.50471652482188	-0.168397790541169	0.684854905059683	0.870922734353662
Merged-chr7-82866264-4	chr7	82866180	82866380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1053.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	8.00157670766542	7.90685474739095	7.85356025377553	8.27830025326845	8.4090299909821	8.33916524523283	8.71655053126521	8.50037273083489	0.594658043768368	0.00103483560088269	0.0138222111531674
Merged-chr8-70833217-5	chr8	70833137	70833337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6483.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	6.45595874940124	6.98312993863624	6.35141557587722	5.99654556726022	6.40859698819822	6.58164260950622	6.20410210253361	6.36508977834632	-0.13967504166308	0.617611870341709	0.835633274769094
Merged-chr17-5591788-4	chr17	5591692	5591892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	99192.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	8.76670701617128	8.03410302282941	9.04099490888203	8.83275994237714	8.4276366181266	8.29718089322766	8.82463896618759	8.48998051702255	-0.244948008266591	0.284773847091644	0.596568931444025
Merged-chr2-72203810-3	chr2	72203757	72203957	+	819.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 11 of 26)	intron (NM_001355478, intron 11 of 26)	-81780.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	3.16854031375766	3.00867136490385	3.03050680828176	2.91059250031376	3.726159927732	3.58208699060503	3.54867196133806	3.56260587773013	2.1728342809277	3.86327882088545e-05	0.000903819533771941
Merged-chr11-109298184-4	chr11	109298055	109298255	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011268)	promoter-TSS (NM_011268)	26.0	NM_001165934	19739.0	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	4.49869775080759	4.63174280038365	4.45407599760418	5.14243759132999	4.84869282932079	4.58521833457321	4.85788492871538	4.45134649324739	-0.0735783222094335	0.853878907226168	0.944905950148447
Merged-chr16-24348182-4	chr16	24348036	24348236	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45214.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	6.01375546605898	5.76770777882899	6.61688158037156	6.45533358409869	5.45811959547177	5.35369551502036	6.16262482241854	6.01049483671371	-0.73696129945275	0.0247976621113129	0.147612734481722
Merged-chr8-120786590-4	chr8	120786514	120786714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47975.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	5.48543634136041	5.47521372252753	5.51481222828956	6.054551226174	5.52553248840376	5.4122523402539	5.59417604632812	5.69368491523712	-0.207815346731963	0.488425542154827	0.761285866490867
Merged-chr9-64022086-4	chr9	64021989	64022189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008542)	promoter-TSS (NM_008542)	-30.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	7.65985698170215	7.85152525309	7.54310839848225	7.86248389429644	8.03793920551471	8.0818933813829	7.82294734187777	7.97521046756644	0.30993528039625	0.0741988677645373	0.293460088270934
Merged-chr14-47351067-4	chr14	47350944	47351144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22816.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	7.72181877618983	8.048997882629	8.18397874511719	8.37949599419145	7.79790949853137	7.40918709917137	7.66035847551736	8.00619106703283	-0.48314134228545	0.0225171665571718	0.138598183878669
Merged-chr5-120503163-2	chr5	120503063	120503263	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023625, intron 1 of 11)	intron (NM_023625, intron 1 of 11)	460.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	4.21692397762461	4.72003597689654	4.67294829954559	4.26577794826722	4.94568613400704	4.95455361102416	4.35222134702628	4.88147064383486	0.701915098316267	0.0729812730418457	0.290730433673179
Merged-chr15-30529797-2	chr15	30529697	30529897	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	357204.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	3.6602657425577	3.57736779418005	3.60432278092565	4.12545734226991	3.50659652475787	3.93702456017078	3.89363457838465	3.65876750086357	-0.0712414071474287	0.889785817964943	0.958691926447886
Merged-chr8-95427782-4	chr8	95427675	95427875	+	946.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008187, intron 1 of 5)	intron (NM_008187, intron 1 of 5)	7094.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	4.77973016295128	4.60246206845011	4.54552832904674	4.82324010515157	4.80068060594757	4.44021289116311	4.92326487320949	4.58489337448136	0.0117933106256457	0.973703701823405	0.990570637473211
Merged-chr7-43562204-4	chr7	43562094	43562294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008549)	promoter-TSS (NM_001008549)	-176.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	8.02077054632809	8.09148617119593	7.75876712136699	7.80015678928823	7.75177842040204	8.37760803270997	7.90215512743117	7.86999065739166	0.0904724336458378	0.651322569212162	0.853894409112639
Merged-chr17-47593436-4	chr17	47593344	47593544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007632)	promoter-TSS (NM_007632)	-23.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	8.05346848785658	8.09575431425265	7.6106819672898	7.77829281836846	7.94146033342247	8.02609258351623	7.76513938607985	7.64983386926961	-0.0556493490418591	0.771566547111279	0.910421153736282
Merged-chr16-44764718-1	chr16	44764618	44764818	+	681.0	f0_balb.idr	Intergenic	Intergenic	-1018.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	3.13576390351001	3.28362791631629	3.19094720287396	3.23041415259463	2.72872664679695	2.99849233974265	2.81340894510619	2.889236142635	-1.61782184559197	0.00970511536845152	0.077244817937047
Merged-chr2-155050404-2	chr2	155050304	155050504	+	989.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015770, intron 3 of 3)	intron (NM_015770, intron 3 of 3)	24093.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	3.28930660169364	3.32060805486824	3.34695571705256	3.00751000565039	3.34338915440483	3.27921579869128	3.43973231598211	3.45225749819105	0.528683547908298	0.32303631270803	0.63451078156203
Merged-chr1-85775213-3	chr1	85775110	85775310	+	926.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_108086)	promoter-TSS (NR_108086)	-61.0	NR_108086	77762.0	Mm.434298	NR_108086	ENSMUSG00000100217	9930111H07Rik	-	RIKEN cDNA 9930111H07 gene	ncRNA	4.45839727849478	3.77888982917395	4.03199119988259	4.36325224341384	3.3373832150212	3.65226834092102	3.96728454422308	3.7753305758473	-1.39326556612853	0.00719156891439501	0.0621299531202479
Merged-chr4-114970950-4	chr4	114970851	114971051	+	944.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025647, intron 1 of 5)	intron (NM_025647, intron 1 of 5)	16277.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	5.19600964460475	4.64647392765139	5.31064913437651	5.18587167037089	4.98543676626967	4.95532162587568	4.94522625135877	5.10074171973449	-0.213965983136202	0.520432992473421	0.780787600139836
Merged-chr9-53673775-3	chr9	53673671	53673871	+	788.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6264.0	NM_027807	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	3.91835989024589	3.91924990938174	4.00943952539915	3.70811844826148	3.8690893298589	3.65655378209815	3.80571709404368	3.71398753404785	-0.330234119211542	0.469662019132172	0.748495910704808
Merged-chr15-94557635-4	chr15	94557553	94557753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029926, intron 6 of 11)	intron (NM_029926, intron 6 of 11)	13993.0	NM_029926	266632.0	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	5.36152489142715	5.4645669300963	5.26621405246979	5.47963433149143	5.54641303315508	5.68246085549487	5.77220305387268	5.55833567587799	0.400123546833043	0.138568141656757	0.414119317038113
Merged-chr7-28867822-4	chr7	28867705	28867905	+	946.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3419.0	NM_008496	16858.0	Mm.20973	NM_008496	ENSMUSG00000053522	Lgals7	Galectin-7|Pig1	lectin, galactose binding, soluble 7	protein-coding	4.24720757763125	4.80964405912165	4.71047984283676	4.06224825033382	4.37059904764175	4.69371823883495	4.45818315025699	4.63474330697849	0.125733284202193	0.763021972287321	0.907045125264112
Merged-chr8-69774949-4	chr8	69774747	69774947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177899)	promoter-TSS (NM_177899)	64.0	NM_177899	330788.0	Mm.41364	NM_177899	ENSMUSG00000043090	Zfp866	9830167H18Rik|AI875089|C85843|D330038O06Rik	zinc finger protein 866	protein-coding	7.06034268048815	7.06043536151514	7.1442630636345	7.17837707753377	6.85993213510546	7.36571266875691	7.08539679367224	7.24858189772752	0.0387703798428986	0.846615531688798	0.941967608044389
Merged-chr10-62650537-2	chr10	62650437	62650637	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358820)	promoter-TSS (NM_001358820)	681.0	NM_001358819	94213.0	Mm.114116	NM_053183	ENSMUSG00000020076	Ddx50	4933429B04Rik|8430408E17Rik|GU2|RH-II	DEAD (Asp-Glu-Ala-Asp) box polypeptide 50	protein-coding	3.90572763000509	3.99758357923072	4.16449914000638	4.08186751534084	4.33746566087206	4.33717581986185	4.31942042701343	4.45345340563697	0.788378706442307	0.0443308713943038	0.21472794113475
Merged-chr3-85195275-4	chr3	85195194	85195394	+	920.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-122225.0	NR_040542	73283.0	Mm.489084	NR_040542	ENSMUSG00000099995	1700036G14Rik	-	RIKEN cDNA 1700036G14 gene	ncRNA	4.16257974684836	4.03607314496371	4.81497990903472	4.4645748813053	3.83206863209634	4.08364563238627	4.23535069282501	3.95632195359813	-0.941253067227582	0.0378232441911501	0.194398201912187
Merged-chr15-98387802-4	chr15	98387709	98387909	+	870.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-8701.0	NM_147036	259038.0	Mm.377802	NM_147036	ENSMUSG00000056184	Olfr283	MOR160-1	olfactory receptor 283	protein-coding	4.48535929945596	4.81412632713048	4.6439474288112	4.15902509762481	4.60418517360864	4.43520149969053	4.54611954456096	4.39643415704451	-0.0732849951646525	0.852831011616947	0.944672349828292
Merged-chr3-68952219-3	chr3	68952064	68952264	+	871.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026641, intron 8 of 19)	RLTR45|LTR|ERVK	52406.0	NM_026641	68259.0	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	3.64748302173735	3.55325354928365	3.48549986949461	3.43421577931134	3.4633385398222	3.65807770656414	3.58160648972031	3.78899218048091	0.316611653740594	0.512850490150595	0.776017039843318
Merged-chr19-6459724-4	chr19	6459629	6459829	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205235, intron 6 of 21)	intron (NM_001205235, intron 6 of 21)	40991.0	NM_001205234	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	5.6540856425259	5.4104345950991	5.06649270069869	5.20312790758122	5.37797577747367	5.2818027373374	5.64938211068448	5.47471356135944	0.192260823658673	0.523340381196395	0.782464816143387
Merged-chr11-118980548-4	chr11	118980450	118980650	+	957.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-7631.0	NM_001359574	238011.0	Mm.244114	NM_001030291	ENSMUSG00000046697	Enpp7	Alk-SMase|Gm254	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding	4.57654972117122	4.82435088878387	4.24590927220846	4.48524947997393	4.95061998819256	4.6227333665435	4.74821246318327	4.90387152986815	0.57153773328696	0.114638214519813	0.374533599886066
Merged-chr17-28513931-4	chr17	28513849	28514049	+	998.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16912.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	5.39336137964654	4.90143049974309	5.22726796571385	5.14129303528265	5.02884778880195	4.66894196029245	5.1093409888704	5.33731583667987	-0.213786298279848	0.522737170298048	0.78208877064842
Merged-chr3-106474401-4	chr3	106474315	106474515	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR104_Mam|LTR|Gypsy	-8016.0	NM_001093754	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	5.16089664824833	5.09925528657543	4.90447676625897	4.99089934696935	5.00946804818029	4.88884486309566	4.64907375276888	4.62388456005134	-0.452645951464582	0.175208214360903	0.469912833953675
Merged-chr18-36342083-4	chr18	36341999	36342199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6525.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	6.03133542186385	5.74746992022495	5.9047400501824	6.09260801074392	5.68974776628127	5.72217766951392	6.0979094091672	5.65454375669943	-0.254388291512417	0.33457541287603	0.645071328704234
Merged-chr3-89785549-4	chr3	89785391	89785591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11882.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	5.73404580861833	5.9164151486091	5.87802365137184	5.75845675722409	5.56127261764745	5.66369023717312	5.7059928108822	6.19019382276657	-0.0373757189910508	0.891537840870052	0.959385213525176
Merged-chr7-98178260-4	chr7	98178136	98178336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007602)	promoter-TSS (NM_007602)	38.0	NM_007602	12337.0	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding	6.71088962247408	6.85182462852278	6.43928909991324	6.48402649684588	6.6040231018014	6.79793004064576	6.49240223122424	6.61755354421112	0.00392387739555916	0.985731786515313	0.994745836509676
Merged-chr17-33827050-3	chr17	33826953	33827153	+	860.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_103515)	TTS (NR_103515)	2408.0	NR_103514	66416.0	Mm.29513	NM_023202	ENSMUSG00000041881	Ndufa7	14.5kDa|2400007M02Rik|CI-B14.5a	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)	protein-coding	3.58675922124575	3.54516951231197	3.41906206001879	3.6404394809919	3.79282636494833	3.59185311458125	3.46478739045948	3.47579574443099	0.127930334789824	0.795660759037766	0.920897975671128
Merged-chr7-84197595-3	chr7	84197462	84197662	+	863.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45669.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	3.16910026919689	3.70462887533715	3.38144236021928	3.04826038003049	3.92585166077113	4.08479651443623	3.76017571014948	3.82266157679387	1.76761943412207	0.000908521623383811	0.012476878377549
Merged-chr6-35236573-4	chr6	35236477	35236677	+	975.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027513, intron 34 of 42)	intron (NM_027513, intron 34 of 42)	-16122.0	NR_015608	67705.0	Mm.228046	NR_015608	ENSMUSG00000073155	1810058I24Rik	AI414869|AI848234	RIKEN cDNA 1810058I24 gene	ncRNA	4.95679504145896	5.21906670639999	5.55149534627241	5.33373910855482	5.17195134581657	5.28474447213115	5.61862083889217	5.44366444988114	0.179140598600806	0.562975676316048	0.805970467316317
Merged-chr14-63413758-4	chr14	63413684	63413884	+	818.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	3403.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	4.29396378801021	3.86648184632887	4.44868399199766	4.52923353049703	3.94456598928642	3.72915938684208	4.00456690711374	4.20723262590749	-0.858235463891285	0.0613519992351323	0.262060366872149
Merged-chr7-44306187-2	chr7	44306042	44306242	+	688.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009131, intron 2 of 3)	intron (NM_009131, intron 2 of 3)	817.0	NM_009131	20256.0	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding	2.37194973444181	2.43982279635613	2.37227219892549	2.0117974385987	2.07135179930515	2.19365701821256	2.16127016372437	2.30628135637564	-0.779254843785397	0.337082401267553	0.646919222783503
Merged-chr5-26905374-4	chr5	26905275	26905475	+	914.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198886, intron 1 of 25)	intron (NM_001198886, intron 1 of 25)	597.0	NM_001198886	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	4.36256061088928	4.744253839562	4.61417551277805	4.80725290084727	4.57359732538555	4.39524870991434	4.34425398011963	4.3605651845034	-0.508836313176712	0.175563038150849	0.47032648424841
Merged-chr5-150117018-4	chr5	150116991	150117191	+	650.643738	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	98416.0	NM_001289566	140498.0	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	2.20830483939778	2.23805828708292	2.28881236238372	2.33199830121869	2.57016435408823	2.80145763750929	2.73580159977715	2.63098499007239	2.29098688494065	0.00284453629778198	0.0306774619908824
Merged-chr4-133207027-4	chr4	133206897	133207097	+	862.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	5539.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	5.2900708508891	5.18588546609029	5.10535396825339	4.97403043677467	3.76424442782907	4.53244092674801	4.42554692954236	4.18174881052763	-2.01109853974298	1.28180602092113e-06	4.38431863350047e-05
Merged-chr9-82974331-4	chr9	82974244	82974444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081216, intron 4 of 39)	(CCG)n|Simple_repeat|Simple_repeat	1145.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	7.15962171797189	6.95219402653497	6.85464544243839	7.20073501779525	7.26462064901951	7.18141879734541	7.36068431783729	7.17827460545512	0.259493019709901	0.178005786112768	0.473814030892067
Merged-chr10-62213703-4	chr10	62213604	62213804	+	721.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	ORR1B1|LTR|ERVL-MaLR	17514.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	4.17640952650815	3.92244893869614	3.85152762175208	3.8774758300312	3.86639250947951	4.21687528985487	3.98392094072321	3.68052338605996	-0.0294929818623318	0.947750798592445	0.981348536548879
Merged-chr8-90828794-4	chr8	90828702	90828902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177224)	promoter-TSS (NM_177224)	-33.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	6.9798665644206	7.06897515051397	6.62170844662031	7.13793012419865	6.94312492443666	6.78298224085934	6.93329715595712	6.98858729458397	-0.0877240934166275	0.674429502114084	0.866144208984521
Merged-chr7-19669589-4	chr7	19669500	19669700	+	955.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4320.0	NM_001309795	11813.0	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	5.0807484465983	4.73004304269811	4.76374231288382	5.05922978956479	5.23183824651943	4.93946918009798	4.9601020612417	4.71998825128928	0.119440487542417	0.725843680821418	0.890921883682774
Merged-chr5-99381794-4	chr5	99381681	99381881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-128854.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.81632667370711	7.64218979775425	7.48502898588847	7.80240825297668	7.77176654608507	7.93353070924021	7.74183292540917	7.69468617813867	0.114979418758997	0.510816842300771	0.775005008659931
Merged-chr7-110614383-4	chr7	110614283	110614483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 1 of 40)	CpG	537.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	6.02049137039307	6.05653977286029	6.80755435437144	5.99083039185565	6.17269788205575	6.36788925714878	6.27335800930098	6.18722860627616	-0.0103269257697671	0.970334434031753	0.989363052284001
Merged-chr4-134490197-3	chr4	134490095	134490295	+	945.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	-6566.0	NM_001285845	71904.0	Mm.142343	NM_027995	ENSMUSG00000037348	Paqr7	2310021M12Rik|AV001994|BB007237|Mpra|PGLP|mPR	progestin and adipoQ receptor family member VII	protein-coding	4.01449666621119	3.96707638491039	4.40512388346338	3.96177856707626	3.62894890424631	3.63884573094161	3.6923771148439	3.86765954618641	-1.112016668071	0.0178222505475042	0.118436184457175
Merged-chr11-113100875-2	chr11	113100807	113101007	+	740.25	f0_balb.idr|f0_c57.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	100931.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	4.21304034129637	4.4220983202883	4.16340618722819	3.78549869731623	4.63479421018001	4.0684040095591	4.71092491259942	4.88539682665367	1.05583024744727	0.0154232115812199	0.106969282265842
Merged-chr1-165681589-4	chr1	165681414	165681614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	26580.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	6.53939341323805	6.83376432633643	6.67681486214757	6.58930635135856	6.30787525022596	6.56421962755454	6.02882216215365	6.22973814788554	-0.542262483036015	0.0179955888992766	0.119167141904615
Merged-chr11-12559397-1	chr11	12559297	12559497	+	786.0	f0_balb.idr	Intergenic	Intergenic	-94437.0	NM_001282993	12808.0	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	3.69177726188275	3.74021865583338	4.02828599271487	3.92436676336925	3.74417829440885	3.63233093885824	3.6226432579905	3.93861763934651	-0.337573792449542	0.468506559457584	0.747803507343786
Merged-chr1-34236510-4	chr1	34236405	34236605	+	898.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 60 of 102)	intron (NM_001276764, intron 60 of 102)	76175.0	NM_010081	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	3.89656488880815	4.17863639802711	4.09123894154815	4.06859595433426	4.00883275960976	3.96418974258839	3.77369479214808	4.13289109898862	-0.234462886779867	0.583670813384883	0.817302188108329
Merged-chr9-13246891-4	chr9	13246817	13247017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025534)	promoter-TSS (NM_025534)	-39.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	7.27062630161309	7.50701536967297	6.97368418802219	7.05788768479575	7.78454854535585	7.79499128379165	7.85021579075495	7.54356839133179	0.70890564192892	0.000346009578325945	0.00569711213871443
Merged-chr11-117655114-1	chr11	117655014	117655214	+	711.0	f0_balb.idr	intron (NM_198022, intron 1 of 21)	CpG	825.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	4.13125693808147	3.91731099287075	4.44555779114528	3.53992364191785	4.0514821098829	4.21300459433094	4.02182781474546	3.71423718580174	-0.0797186744451283	0.873089104186572	0.952427521124774
Merged-chr7-128234999-4	chr7	128234886	128235086	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177001, exon 1 of 1)	3' UTR (NM_177001, exon 1 of 1)	-2371.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	4.85507422010499	5.22839265282484	4.96788013787158	4.70994708510289	5.0662136120096	4.91281236517348	5.10983049370891	5.46018222514622	0.399404445581123	0.235553748356277	0.545550869330724
Merged-chr7-123356352-3	chr7	123356273	123356473	+	762.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	13542.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	3.20647170075097	3.38201247869423	3.37543675308775	3.30481222951414	3.2612911579863	3.12111528964209	3.36193197557067	3.20529725919529	-0.285057938201082	0.593637905275023	0.82292154282764
Merged-chr11-102440462-3	chr11	102440348	102440548	+	852.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199200, intron 3 of 7)	intron (NM_199200, intron 3 of 7)	7215.0	NM_199200	217219.0	Mm.259924	NM_199200	ENSMUSG00000034685	Fam171a2	-	family with sequence similarity 171, member A2	protein-coding	2.78526922523248	3.33092028467793	2.93058731137984	2.72401516907305	3.18958091292242	3.3518733416984	3.16841542398947	3.23514383833112	1.08527679501512	0.0788851924129596	0.303956003407184
Merged-chr19-23759727-4	chr19	23759668	23759868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177034, intron 1 of 12)	intron (NM_177034, intron 1 of 12)	892.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	6.22961198894751	5.85994300960976	6.28651372495267	6.72935312018878	5.94458975725065	5.7562465357725	6.34157367126666	6.30004803506893	-0.3378964635999	0.248852227891014	0.56007881897978
Merged-chr16-55801788-4	chr16	55801692	55801892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20346.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	5.95445495357441	5.57224690371604	6.05348768069776	5.9507774584844	5.50213682312929	5.63985270847151	5.40483543243772	5.33215418020201	-0.704851909892246	0.0103257604784326	0.0808289129104094
Merged-chr15-41350084-4	chr15	41349975	41350175	+	902.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97407.0	NR_152565	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	5.52509857494359	5.37562334704649	5.98785374922317	6.01608778081674	4.61120508592673	4.74094244315468	4.76925027509242	5.03247300620468	-1.81606356297882	8.62662539162016e-08	3.7372767422406e-06
Merged-chr5-64239514-2	chr5	64239414	64239614	+	872.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	9157.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	2.55029468747184	2.69132262624841	2.69910238842397	3.16193736722712	3.13489429475899	2.93908621633572	2.88478112881923	2.95271068076127	0.73653058403644	0.30846491623505	0.620793493346942
Merged-chr17-57250040-1	chr17	57249940	57250140	+	912.8333130000001	f0_balb.idr	intron (NM_001242390, intron 1 of 14)	intron (NM_001242390, intron 1 of 14)	589.0	NM_001242389	106628.0	Mm.37368	NM_134125	ENSMUSG00000019487	Trip10	AI646975|Cip4	thyroid hormone receptor interactor 10	protein-coding	4.44131640693662	4.34397506435423	4.32526163404347	4.12086720018118	4.07855816498218	3.83075894311615	4.17795628434723	4.10037863593195	-0.631126887861491	0.131142941092058	0.403104428771734
Merged-chr6-113419349-4	chr6	113419267	113419467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346511)	promoter-TSS (NM_001346511)	-19.0	NM_001346511	101122.0	Mm.31204	NM_001033204	ENSMUSG00000051169	Rpusd3	AI527266	RNA pseudouridylate synthase domain containing 3	protein-coding	6.08994271536615	6.07998318112037	5.71010645459199	6.14005748534233	6.44563199255633	5.83312391188744	6.13908267126946	6.12710077513324	0.220856031579558	0.39932019205862	0.697398862845002
Merged-chr7-141467787-4	chr7	141467694	141467894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111050)	promoter-TSS (NM_001111050)	-23.0	NR_152219	100126795.0	Mm.386851	NR_152219	ENSMUSG00000073787	Gm10575	-	predicted gene 10575	ncRNA	6.52717247380994	6.4745898879412	5.90338101652554	6.12380058086806	6.28212442002435	6.0568490981154	6.01164947314115	5.97058782297618	-0.280279018108059	0.281244262491215	0.593350676368524
Merged-chr1-171019814-4	chr1	171019713	171019913	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144559, intron 2 of 4)	intron (NM_144559, intron 2 of 4)	887.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	5.17464592264661	5.22860578280873	4.92881966193499	4.84667072607309	5.14554513631167	5.38095823879941	5.21207057661923	5.55545023595892	0.528870912872205	0.0906206174583648	0.328761386269429
Merged-chr1-85650021-3	chr1	85649923	85650123	+	735.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313712)	promoter-TSS (NM_001313712)	35.0	NM_001313714	20684.0	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	3.95912592157605	3.99472127478054	4.31644786560501	3.61123202787399	3.90626441277407	3.76021498037593	3.57196053573107	3.95731930587026	-0.503727624322267	0.309669996146069	0.621833440934041
Merged-chr9-40809733-7	chr9	40809566	40809766	+	923.095215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8393.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	3.88186710051673	4.0035133217479	3.66731748030117	3.46827872619141	3.95262181026781	4.27630926716937	3.59439613532079	3.88010755323424	0.51723495565867	0.294350817009705	0.606614080475317
Merged-chr5-141004421-7	chr5	141004322	141004522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3826.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	5.82591413088724	6.04299779004007	6.32817764395019	5.99249509539161	5.95947635061018	5.70296047742965	5.74746155788344	6.14660479990171	-0.237703680308123	0.36360387053479	0.668649715510373
Merged-chr11-52094796-4	chr11	52094715	52094915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4009.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	6.9651869573662	6.17005228748392	6.69662705902441	6.95834510552022	6.36820930563504	6.25970822902479	6.42744571357526	6.40292664460534	-0.545359713876586	0.0313650547631503	0.172455489489852
Merged-chr12-111416925-4	chr12	111416842	111417042	+	997.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028807)	promoter-TSS (NM_028807)	-488.0	NM_001289487	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	5.22360265358912	6.18955774784945	5.73898694605018	5.26623066813814	6.02738765531243	6.03293727940949	6.12754547354035	5.39419143117196	0.42571441972066	0.217619666590427	0.524585147935519
Merged-chr9-23594826-4	chr9	23594725	23594925	+	986.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	371749.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	5.21843834680435	5.3347916090684	4.8008280451753	5.09456449952608	5.35241139909346	4.93803588738844	5.06964084228228	4.87752989047538	-0.078546468319013	0.813301240496028	0.927857767644014
Merged-chr8-71561551-4	chr8	71561385	71561585	+	851.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145598, exon 2 of 2)	3' UTR (NM_145598, exon 2 of 2)	-2614.0	NM_001100462	434325.0	Mm.33613	NM_001100462	ENSMUSG00000043664	Tmem221	-	transmembrane protein 221	protein-coding	3.93326499533921	3.69047760093345	3.5256261937549	3.72726989613266	3.93746772047966	3.75774522941111	3.57097450320474	3.58243240863827	0.00916724286854531	0.984821506988332	0.994461689709352
Merged-chr12-17522733-2	chr12	17522618	17522818	+	802.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22155.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	2.72870515655082	2.65816018690626	2.72896366522127	2.24930317376293	4.00674951569385	3.89884119521093	3.78943119565659	3.31049377261059	7.68895991688526	1.13405764306564e-14	1.74720971809023e-12
Merged-chr4-41636751-3	chr4	41636654	41636854	+	651.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175138, intron 19 of 19)	MIR3|SINE|MIR	3548.0	NM_027147	69638.0	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	3.8304186889351	3.96430130823506	3.97436741218307	3.89677320812957	3.68986347432522	3.72833328459751	3.65582520367846	3.97191431370213	-0.443606351386373	0.324390248442219	0.636011830483383
Merged-chr1-36941356-4	chr1	36941245	36941445	+	803.729126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1818.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	4.20882922011328	4.10157118254887	3.88506023714094	3.79502880483948	4.0918392505834	4.05912761396538	4.06239796350915	3.77317008411078	0.0236615766080618	0.957256111239032	0.984815156534365
Merged-chr10-70297010-4	chr10	70296931	70297131	+	996.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51755.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	5.17572054685527	5.28291730214433	4.88437282496487	5.70558760428126	5.41333559575226	5.14199799911562	5.15129839345762	5.26741634344455	-0.123492244782992	0.715211143385553	0.886034774001676
Merged-chr4-152152397-4	chr4	152152283	152152483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207687)	promoter-TSS (NM_207687)	-176.0	NM_207687	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	5.65459871778768	5.36585063096721	6.08585978336934	5.66070753562535	5.33365615663707	5.14028904116587	5.26296459230819	5.46755985377384	-0.698147494698581	0.0215363892792851	0.134444716059484
Merged-chr17-73927156-4	chr17	73926990	73927190	+	945.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 6 of 35)	intron (NM_011723, intron 6 of 35)	23106.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	3.50300405132236	3.38341090369849	3.55994629882641	3.90519388259256	3.67617310493547	3.21463680454252	3.96055569334052	3.61205320905126	0.0938586281460584	0.866694494736066	0.950019210311976
Merged-chr7-142458136-4	chr7	142458029	142458229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-2683.0	NM_001271510	16985.0	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	5.30129003420198	5.05739266657793	5.55297258441719	5.07727980238021	5.98847012237781	6.23678651081798	6.12290049666131	6.16804409774336	1.46819509810386	4.66394030954597e-08	2.15428038477075e-06
Merged-chr4-154334889-3	chr4	154334803	154335003	+	748.194458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291026, intron 11 of 16)	intron (NM_001291026, intron 11 of 16)	-35008.0	NM_001112744	230972.0	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	3.45219185654825	3.21927244080426	3.4526528949071	3.00096651857826	3.76177222356681	3.84485441525053	3.60563523884833	3.94278118738518	1.72149559081124	0.000900314441964803	0.0123904643589738
Merged-chr10-75853649-4	chr10	75853553	75853753	+	973.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6597.0	NM_010798	17319.0	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding	5.0758570454865	5.22345213157857	5.21419732593116	5.3346819840527	5.566697592576	5.42108177064177	5.39691878420159	5.42028317914868	0.411559045953128	0.146528443529969	0.426967777286073
Merged-chr17-71479706-3	chr17	71479601	71479801	+	977.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-4358.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	3.32518539879347	3.14595887788726	3.32560436881717	2.57422644923588	4.60541668900827	4.26929568847364	3.94272204491298	4.0489717010019	4.01274822346876	8.27835777350355e-10	5.39601857106419e-08
Merged-chr2-117304127-4	chr2	117304026	117304226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 3 of 16)	intron (NM_011246, intron 3 of 16)	38751.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	6.12148543349959	6.19496835403298	6.03462860364086	5.65666067542626	6.70000271190076	6.49483417017006	6.47118867146535	6.49993351702159	0.833881237432631	0.000607203162947027	0.00902321674364913
Merged-chr10-9880566-4	chr10	9880425	9880625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081344, intron 2 of 25)	Lx|LINE|L1	20515.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	5.75539292398316	6.13275478445041	6.61090361299667	6.73138706354471	5.42072389870733	5.68102780315143	5.267830921937	5.77799001539254	-1.31731906113975	2.974256489607e-05	0.000721556246331753
Merged-chr12-91305995-4	chr12	91305906	91306106	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181815, intron 10 of 25)	intron (NM_181815, intron 10 of 25)	78403.0	NM_181815	75216.0	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	5.97253086058492	5.83498646586173	5.84503316338979	5.9350324825741	5.64842184527639	5.82566267021999	5.4541615560846	5.24849809666997	-0.557350249763702	0.039508028374378	0.200166698815563
Merged-chr3-98032388-4	chr3	98032277	98032477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	18839.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	6.32039770119495	6.3608697788662	6.16988955297003	6.37696263998308	6.38083726708728	6.15168250435388	6.03404536219193	6.03857376542268	-0.219609052323517	0.346097516559138	0.654364893116659
Merged-chr9-70421571-4	chr9	70421452	70421652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007630)	promoter-TSS (NM_007630)	2.0	NM_007630	12442.0	Mm.22592	NM_007630	ENSMUSG00000032218	Ccnb2	CycB2	cyclin B2	protein-coding	5.87829760210227	5.75226491400082	5.50703350015259	5.06970300754032	5.6198193657507	5.84408964598652	5.71400746764275	5.76291300869409	0.276899670312779	0.366347545119296	0.670823521147519
Merged-chr16-44768140-4	chr16	44768034	44768234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	2398.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	5.80090954694384	5.66578438365775	5.14800630740257	5.54875093496703	5.6732041899346	5.70507882216351	5.35787600445216	5.63203452664516	0.0639371830415273	0.825634702314499	0.933134099875256
Merged-chr7-100511831-4	chr7	100511727	100511927	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153527, exon 2 of 8)	exon (NM_153527, exon 2 of 8)	2988.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	5.58569113818495	5.42848439361989	5.21182134795921	5.34945913286117	6.18532317291731	6.45630806513585	6.71511429349819	6.40744493484345	1.6616237297355	1.68969105338584e-10	1.24503643363303e-08
Merged-chr13-112748249-4	chr13	112748141	112748341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52536.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	6.81938154397561	6.5505981404649	6.95003724348118	6.6781109999914	6.83991229832342	6.65543237549548	6.95106492179827	6.5256962766268	0.0104883825761967	0.961524602970146	0.986243385183544
Merged-chr12-26454842-4	chr12	26454720	26454920	+	789.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021384, intron 1 of 5)	intron (NM_021384, intron 1 of 5)	1632.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	4.25967297815603	4.7206178954015	4.07614791528272	3.72311509380056	4.05393894862348	4.3450419590226	4.05849674751863	3.85977823981563	-0.389773139273106	0.424643849064911	0.716342477702877
Merged-chr11-120720635-4	chr11	120720536	120720736	+	935.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133223)	promoter-TSS (NM_133223)	-832.0	NM_133223	170758.0	Mm.34008	NM_133223	ENSMUSG00000018012	Rac3	Rac1B	Rac family small GTPase 3	protein-coding	4.77211688725526	4.35708451730891	4.13682536956556	4.22605730980636	4.5741728080121	4.51594592255575	4.36546837023603	4.95497713199252	0.523452780485812	0.195859736241635	0.496725581341956
Merged-chr8-79498829-4	chr8	79498732	79498932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99364.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	7.94520696765218	8.06595979550633	8.32359531605176	8.47261355747725	7.87373956396519	8.03451316520731	8.2792223926928	8.02489823276966	-0.214280332433464	0.262637588385253	0.574445092878026
Merged-chr1-58973506-4	chr1	58973413	58973613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172406)	promoter-TSS (NM_172406)	-9.0	NM_172656	227154.0	Mm.286006	NM_172656	ENSMUSG00000026027	Stradb	AA792893|Als2cr2|B830008M19|D1Ucla2|ILPIP|ILPIPA|PRO1038|Papk|Syradb	STE20-related kinase adaptor beta	protein-coding	7.6812533729703	7.4031302540066	7.22554831861411	7.57585114410183	7.74419702457323	7.85153244339719	7.68495233531713	7.62746859296997	0.318555125486536	0.0825390316241158	0.311954852226036
Merged-chr8-27260283-4	chr8	27260184	27260384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007918)	promoter-TSS (NM_007918)	-43.0	NM_007918	13685.0	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	7.41772146595873	7.48063166922382	7.33778617277757	7.58530407794483	7.35030003344457	7.40586929596276	7.75249655700208	7.48079993345005	0.0500472312912177	0.788688704836333	0.91812687233996
Merged-chr11-46314904-4	chr11	46314830	46315030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-2071.0	NM_001252459	76884.0	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	6.9205300102613	6.96276320004412	7.05387473038651	6.71523390881584	6.9569291520055	6.61037418610904	6.52307839668317	6.46423682915597	-0.345004511851502	0.124300898738888	0.391259263361566
Merged-chr12-55492374-3	chr12	55492278	55492478	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010907, exon 1 of 6)	exon (NM_010907, exon 1 of 6)	269.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	8.01595409388155	8.51261403356883	8.06252851144307	7.19474109827879	8.15466454396044	8.31440449806861	7.59794733656986	7.31764646890592	-0.156909648230699	0.723707594595869	0.889731469259882
Merged-chr5-99488810-4	chr5	99488744	99488944	+	883.074402	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	ORR1D2|LTR|ERVL-MaLR	-235917.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.11775245904987	4.10291952599743	3.8149646180269	4.27816559047565	4.14834351162643	4.09798570210264	3.6832404479394	4.20274243348508	-0.127232217417538	0.778049567886122	0.913512638436367
Merged-chr2-51284865-4	chr2	51284795	51284995	+	693.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040636, intron 1 of 2)	intron (NR_040636, intron 1 of 2)	43064.0	NR_040636	329404.0	Mm.417725	NR_040636	ENSMUSG00000086349	Gm13497	A730015I17	predicted gene 13497	ncRNA	4.19383810285053	3.77772659069033	4.11274896143093	4.22572833346242	3.94838879679953	3.65287712892568	3.86538497950329	3.53396931572698	-0.909525091421175	0.0575310165951221	0.251736658893723
Merged-chr12-105937306-4	chr12	105937201	105937401	+	946.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72962.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	5.196419663937	4.90114229853984	5.25698241908928	5.45522897160754	4.86716400944268	4.5620902525622	5.25927397963632	5.31020659149417	-0.364889833010939	0.306916703505195	0.619271027547588
Merged-chr19-12540153-4	chr19	12540063	12540263	+	954.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33347.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	4.22056441400773	4.60427897647084	4.4226713379455	4.39505599995539	5.07443856382696	4.7317025505359	5.15131358902292	4.46582386309211	1.00404729740955	0.00798524768764502	0.0671211555454517
Merged-chr14-8174861-3	chr14	8174752	8174952	+	784.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1860.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	3.05521041822841	3.25121758587296	3.05551999815151	3.07771116744492	3.53412087178614	3.70334493460542	3.61470829512675	3.48158965911583	1.66889562028858	0.00146874807079901	0.0183507142235217
Merged-chr7-126566439-4	chr7	126566290	126566490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146200)	promoter-TSS (NM_146200)	-24.0	NM_146200	56347.0	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	5.63373217015307	5.64576060528386	5.58302440755159	5.25425879880276	5.63734427290081	5.64809556356503	5.50138207291606	5.6051773207914	0.137463677600192	0.620064607121179	0.837050380709854
Merged-chr15-85832798-2	chr15	85832698	85832898	+	906.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033337, intron 1 of 13)	intron (NM_001033337, intron 1 of 13)	494.0	NM_001033337	239570.0	Mm.151748	NM_001033337	ENSMUSG00000035944	Ttc38	9030019H09	tetratricopeptide repeat domain 38	protein-coding	3.05857520109084	2.84442849234894	3.00433275706513	2.79391204366334	2.8007578813123	2.79468458077903	2.81521020964486	2.82328627199988	-0.522112787153286	0.398383648092073	0.696635540782353
Merged-chr3-152886950-2	chr3	152886864	152887064	+	840.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	95243.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	3.08396578149937	3.45087281270442	3.13991019653836	2.89452336789084	2.87195615203543	2.63549012053349	2.68398579083675	2.96413466262172	-1.59351433079433	0.0212346953627781	0.133203876022489
Merged-chr15-35293149-4	chr15	35293077	35293277	+	820.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2935.0	NM_054049	107587.0	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	4.22907460977698	4.01412389767211	4.5041517383651	4.01309687548511	4.04239275715688	4.31162195779756	4.12092933566376	4.03896459744016	-0.164651066753272	0.698251524496121	0.878303994693932
Merged-chr14-20826139-3	chr14	20826034	20826234	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-10528.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	5.70006471272178	5.71665112179949	5.30573380700909	5.75404739729023	3.91009049785709	4.23665272534786	4.14474634551973	4.33797869437174	-3.30784201773857	2.72998026188694e-16	5.45835014215872e-14
Merged-chr8-68557092-1	chr8	68556992	68557192	+	836.666687	f0_balb.idr	5' UTR (NM_001252623, exon 4 of 11)	5' UTR (NM_001252623, exon 4 of 11)	178054.0	NM_001252623	234356.0	Mm.334569	NM_172753	ENSMUSG00000036356	Csgalnact1	4732435N03Rik|CSGalNAcT-1	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding	3.13200200285369	3.14622608371279	3.07704818812859	3.44969874546816	2.47911639018194	2.7909553849024	2.7502912788147	2.82698543708517	-2.58049755996826	0.00057259609152046	0.0086075643502291
Merged-chr17-12892295-4	chr17	12892212	12892412	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034866, intron 14 of 18)	intron (NM_001034866, intron 14 of 18)	16278.0	NM_030726	80978.0	Mm.160368	NM_030726	ENSMUSG00000059408	Mrgprh	Gpr90|Mgrb|MrgH	MAS-related GPR, member H	protein-coding	4.42177706943224	4.1573312681005	4.87758048498501	4.79158826915711	4.2983359032306	4.21401555436483	4.22341160205883	4.23909495670453	-0.828123176843825	0.0453128745920072	0.217938193315874
Merged-chr8-75103658-5	chr8	75103550	75103750	+	721.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A2|LTR|ERVK	-5859.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	4.11533323257927	4.74892051285059	3.6049150260483	3.50677055137399	3.83081533356177	4.68825851585078	3.72126495557581	4.15974893456949	0.142863518507026	0.867539874296349	0.950331199983684
Merged-chr1-176819508-3	chr1	176819400	176819600	+	882.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 1 of 18)	intron (NM_001357390, intron 1 of 18)	4840.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	3.65780292321615	3.53122605274837	3.71474763855485	3.72278260090511	4.07185953386914	3.99225721525106	4.03449802335347	3.86854455403219	0.951456602947436	0.0317266961425062	0.173740152694834
Merged-chr16-32079305-4	chr16	32079190	32079390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177326)	promoter-TSS (NM_177326)	52.0	NM_177326	224105.0	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 (RAC1) activated kinase 2	protein-coding	7.57437317547843	7.73675964461393	7.77155470335614	7.36710490082686	7.54095469309481	7.54189616706265	7.49357799171183	7.60529981286575	-0.0877819066022425	0.631432025341279	0.843398388661416
Merged-chr8-24923630-3	chr8	24923518	24923718	+	683.311096	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153397, intron 3 of 21)	intron (NM_153397, intron 3 of 21)	25186.0	NM_001293693	353188.0	Mm.269223	NM_153397	ENSMUSG00000037437	Adam32	-	a disintegrin and metallopeptidase domain 32	protein-coding	3.41076978313206	3.51122761649836	3.66336047589398	3.53668045913701	3.02172006892105	3.27862751877848	3.3417020932581	3.40936853006244	-0.974770829652422	0.0730502960352311	0.290914139365301
Merged-chr2-165286581-4	chr2	165286471	165286671	+	965.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252575, intron 1 of 9)	intron (NM_001252575, intron 1 of 9)	1216.0	NM_001252574	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	5.64189973783293	5.20113327490184	4.9752844741282	5.3022006861717	4.97035081268061	4.91555145848303	4.95146406616004	5.0431605052005	-0.625152631160608	0.0525372565284214	0.238837202762378
Merged-chr17-44777629-4	chr17	44777518	44777718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178652, intron 1 of 11)	CpG	452.0	NM_178652	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	6.76423337574293	6.75104500040284	6.79389657324734	6.87889513265352	6.77278784636684	6.91271095088034	6.89223253268291	6.59142730048777	-0.0100544458070697	0.959919335900467	0.985662310124408
Merged-chr2-77309508-4	chr2	77309425	77309625	+	995.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28933.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	5.9836253411109	5.96340276721505	5.45206858438703	5.69616384134612	5.95904627479065	6.09487923531437	5.84666068894966	5.38390288729629	0.0979972221654931	0.736621052605208	0.896043754662457
Merged-chr13-37913292-3	chr13	37913197	37913397	+	961.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 6 of 9)	intron (NM_001039188, intron 6 of 9)	24426.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.45305828623861	3.62167272793518	3.90619686081497	3.74116710280321	3.48771740198857	3.3720428076568	3.65954290078071	3.67261320588982	-0.443469210827007	0.374775371827616	0.677891254741963
Merged-chr1-54927506-4	chr1	54927393	54927593	+	931.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1106.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	4.31543924087582	4.50159957144809	4.3617646072469	4.4077654283326	4.86105544951022	4.06759028623907	4.65550104617319	4.40311435821524	0.327066402065394	0.419586947032994	0.712698866070656
Merged-chr7-83742860-3	chr7	83742738	83742938	+	885.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7299.0	NM_010551	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	3.09224718941573	2.87467725626842	3.0252918538195	2.87100952356426	3.60879495896276	3.3921722678125	3.31859637563635	3.5325523570569	1.96485758197138	0.000347144531204699	0.00570655902693286
Merged-chr13-38658592-4	chr13	38658526	38658726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025380, intron 1 of 3)	CpG	402.0	NM_025380	66143.0	Mm.490319	NM_025380	ENSMUSG00000001707	Eef1e1	1110003A02Rik	eukaryotic translation elongation factor 1 epsilon 1	protein-coding	5.79200382892278	5.86866483026939	6.36971686745443	5.70532758054898	5.56892875138785	5.91929213825981	6.28846229427751	6.06004739386399	0.043721470855231	0.882964577424011	0.955900341553563
Merged-chr19-15998332-3	chr19	15998234	15998434	+	783.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045355, intron 2 of 2)	intron (NR_045355, intron 2 of 2)	13259.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	3.50488373073199	3.52915258491138	2.95220269831421	2.89447501506279	3.79394957050997	3.34092306715199	3.21479290114342	3.22484117873979	0.575126982937537	0.36506084873605	0.669759676062152
Merged-chr12-85455350-4	chr12	85455245	85455445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-18545.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	8.77900362705848	8.97726380005401	8.8525065528962	8.50183746631272	8.85019536945579	9.21512839568726	8.81658764737844	8.8033744157877	0.182377492894568	0.306940600617968	0.619284645348604
Merged-chr15-88745531-4	chr15	88745412	88745612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2D|LTR|ERVL	-6199.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	6.34970186733263	6.40164310076196	6.60847931427299	6.83285250801961	6.07041228813126	6.10992048206571	6.16722443113331	5.95099629426046	-0.75401705801465	0.00164597407718227	0.0201079102864587
Merged-chr2-45197558-4	chr2	45197430	45197630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80088.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.46544577030902	7.59953646990168	7.33058724633534	6.97444963586888	7.61855203061538	7.49738966350625	7.22024293787559	6.9445021862071	-0.00539617177759663	0.981618295051403	0.993453933876439
Merged-chr6-47561014-4	chr6	47560917	47561117	+	975.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146689, intron 3 of 19)	intron (NM_001146689, intron 3 of 19)	34013.0	NM_001146689	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	4.51363438347856	5.19149888098197	4.7593718922509	4.6553504489323	5.00381776966596	4.81782032243958	4.73659354444486	4.03181126860335	-0.214992819889325	0.619721608009806	0.836791403892028
Merged-chr2-27327192-4	chr2	27327075	27327275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 2 of 29)	intron (NR_133905, intron 2 of 29)	-79872.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	6.53113030091668	6.08738078833633	6.27035422865734	6.60837665896548	5.87377418487921	5.60703261832783	6.20134390231817	5.91076074583125	-0.743132711369742	0.00502041097731055	0.0477036220736867
Merged-chr1-144242671-4	chr1	144242559	144242759	+	998.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6445.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	5.42414161832923	5.57909851960014	4.79667370844945	4.96625460984964	5.26912958137183	5.13420895431619	5.00587436273359	5.12929043001255	-0.153802985190944	0.654650633250691	0.855659697629251
Merged-chr17-80997384-4	chr17	80997294	80997494	+	954.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026516, intron 3 of 3)	intron (NM_026516, intron 3 of 3)	52762.0	NM_026516	68027.0	Mm.357108	NM_026516	ENSMUSG00000024245	Tmem178	2810417M05Rik|Tmem178a	transmembrane protein 178	protein-coding	4.60635175284538	3.87746654209431	4.57049940797217	4.6185813726769	4.3570363982757	4.2577928739207	4.34985275021067	4.45089592293019	-0.234666170725083	0.578502086861789	0.814741778472523
Merged-chr9-82975636-7	chr9	82975510	82975710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081216)	promoter-TSS (NM_001081216)	-121.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	6.61779855721265	6.78413285114465	6.97878522294885	6.72211691479147	6.8141480302414	6.98728714636407	6.53696455135848	6.66136590426605	-0.0255585760376279	0.905023385860264	0.964698113671839
Merged-chr7-81859706-4	chr7	81859621	81859821	+	788.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111910, intron 1 of 7)	intron (NR_111910, intron 1 of 7)	720.0	NM_145375	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	4.3731620127826	4.14984632682322	4.41272788084176	4.17977352086725	4.08647298904858	3.90425728703374	4.31377648423164	4.10917173975529	-0.413128339647851	0.315933856592255	0.62781575496774
Merged-chr13-81351666-4	chr13	81351546	81351746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 83 of 89)	intron (NM_054053, intron 83 of 89)	281498.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	6.32145789977049	6.14072330161578	6.47988260703097	6.83840404374124	6.48338277964448	6.23248280456335	6.51044393713126	6.09482461526227	-0.209142971351541	0.423404798047947	0.715311701020053
Merged-chr11-55386622-4	chr11	55386536	55386736	+	960.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33444.0	NM_009242	20692.0	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	4.39958301189768	4.67266308378544	4.18493867723823	4.84064802700474	5.09783858866028	4.95943922679911	4.8690323850248	5.07888338276587	0.884554014557675	0.0193931989163861	0.125318974640894
Merged-chr16-4905244-3	chr16	4905119	4905319	+	816.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	19119.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	3.47448151591091	3.34000917425025	3.57442213104094	3.52324707398499	2.93499463366936	3.23259564701706	3.04226055221535	3.57218813489132	-0.973066137098044	0.0988062500654557	0.34458256116654
Merged-chr3-104481511-4	chr3	104481416	104481616	+	995.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025067, intron 9 of 17)	intron (NM_001025067, intron 9 of 17)	30402.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	4.92111599301295	4.77049255628214	4.92192727027269	5.45005096102035	4.99255034850186	4.9028649604157	5.3514412740577	4.84320410754929	-0.0534569346782511	0.882770793512074	0.955814918609989
Merged-chr11-4199029-4	chr11	4198954	4199154	+	904.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	MIRc|SINE|MIR	12221.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	4.08635881463849	3.97816541574715	4.32581454653636	4.24993438187527	4.40170507004864	4.40943389299428	4.42960553602362	4.63084347932498	0.706759359631361	0.0686907790516688	0.279982875915864
Merged-chr19-28963978-4	chr19	28963886	28964086	+	976.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028922)	promoter-TSS (NM_028922)	66.0	NM_028922	74411.0	Mm.441887	NM_028922	ENSMUSG00000040105	Plpp6	4932443D16Rik|Ppapdc2	phospholipid phosphatase 6	protein-coding	5.11190758462494	5.07222989789143	4.90601069086866	5.40116015227433	5.07474322922787	4.70288527922719	5.0558533375667	5.14066823243578	-0.281835309745962	0.397165943015391	0.695612493933522
Merged-chr4-88395923-4	chr4	88395825	88396025	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 37 of 43)	intron (NM_001081184, intron 37 of 43)	43001.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	5.59676376881117	4.98554739744071	5.19207103360181	5.44905063769966	5.14452200395317	5.12456289613586	5.19783880191372	5.05411587573527	-0.368566108965254	0.239927230088812	0.550399004463438
Merged-chr3-144695470-4	chr3	144695384	144695584	+	911.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 9 of 10)	intron (NM_001282037, intron 9 of 10)	24851.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	4.46985826031335	4.43854745711265	4.63755544256793	4.92672731342193	4.56981108533829	4.60150139038974	4.53600646969536	4.88215412100092	-0.00216509428409755	0.995401397520571	0.998318694595211
Merged-chr15-86202065-4	chr15	86201903	86202103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12456.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	5.51954390038703	5.73701280544344	5.88407013797354	5.59542498745961	5.60626639601935	5.45213388706638	5.52046218506002	5.54439222159997	-0.251046382769714	0.348741947209407	0.656417999270636
Merged-chr12-39039012-3	chr12	39038905	39039105	+	935.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	255294.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	3.6324179959692	3.50184933630168	4.01513663868817	4.19024880375794	3.44636332578985	3.43613823335035	3.91195341440731	3.51486806232937	-0.852803764244847	0.114476932452649	0.374241196667758
Merged-chr19-6118067-4	chr19	6118020	6118220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133678, exon 1 of 2)	exon (NM_133678, exon 1 of 2)	466.0	NM_133678	66406.0	Mm.303924	NM_133678	ENSMUSG00000024790	Sac3d1	2410004C24Rik|AU015683|shd1	SAC3 domain containing 1	protein-coding	5.17866155989733	5.49552424028993	5.54679304511752	5.09516412772041	5.29628915026113	5.25401681262979	4.82244747761752	5.38669425059381	-0.225166082641669	0.486488881802092	0.760181597246907
Merged-chr4-149170818-4	chr4	149170730	149170930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4125.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	5.53080604396439	6.05849332859159	5.58917077933227	5.5446953320162	5.92974520549527	5.94694684485715	5.47461077252318	6.08777552817184	0.296873097168125	0.305413211267955	0.617813594931132
Merged-chr8-107150620-4	chr8	107150554	107150754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025558)	promoter-TSS (NM_025558)	-7.0	NM_025558	66427.0	Mm.20242	NM_025558	ENSMUSG00000031924	Cyb5b	1810044O22Rik|AU015618|Cyb5m	cytochrome b5 type B	protein-coding	6.22011881160213	6.17230024281373	6.18037344438093	6.14289093239755	6.62169480007944	6.92808292402081	6.57013645806052	6.59908502898542	0.755061419686585	0.000502208771123043	0.00774408971398768
Merged-chr9-123925453-4	chr9	123925323	123925523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	43269.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	6.08125556278356	6.12796908370779	5.99801566500026	5.21746459241494	6.06595377279323	6.44538179471986	5.75542815623581	6.24911759981285	0.40419905925008	0.202686481692981	0.505268676501282
Merged-chr15-66969843-4	chr15	66969765	66969965	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008681)	promoter-TSS (NM_008681)	-224.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	5.32842785416032	5.57579070582804	5.58691150069135	5.58918674854822	4.73555214407524	4.8573735514717	5.11963403705428	4.71569278753438	-1.26101214360539	5.47420653060839e-05	0.00122300234350965
Merged-chr13-34096212-4	chr13	34096112	34096312	+	901.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046184, intron 2 of 4)	intron (NR_046184, intron 2 of 4)	17060.0	NR_046184	432745.0	Mm.159104	NR_046184	ENSMUSG00000113591	4930447K03Rik	-	RIKEN cDNA 4930447K03 gene	ncRNA	4.27395623577971	3.92803383435645	4.22888502592993	4.55875223859632	4.45335292812877	4.20606462877547	4.25576739650116	4.51598617650243	0.198082038081962	0.638153780198568	0.847040716325261
Merged-chr11-100629694-4	chr11	100629616	100629816	+	827.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177790, intron 6 of 7)	intron (NM_177790, intron 6 of 7)	6761.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	3.81851102899361	3.72732861526356	4.02457565355036	3.59729951198528	4.32644455677106	4.24229771558829	3.95906014629312	4.15710193890505	1.07984468240334	0.013085688590904	0.0954623581235994
Merged-chr1-146967669-4	chr1	146967557	146967757	+	939.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	469970.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	4.77289670954817	4.30188974302871	4.65768583688171	4.89435825357827	4.77516267635918	5.08360550229244	4.82213019373239	4.61361239363761	0.298352300966758	0.419394897474909	0.712515966395674
Merged-chr8-120812274-3	chr8	120812193	120812393	+	894.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73654.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	3.32244322044825	3.47957752686334	3.48560736071547	3.54879179400436	3.07605870117664	3.17813002605012	3.41980235108495	3.32114687416215	-0.788066519532136	0.145212656489302	0.424637101033319
Merged-chr17-6749448-7	chr17	6749299	6749499	+	866.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 6 of 12)	intron (NM_009510, intron 6 of 12)	33381.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	4.23795954040647	4.40191477267493	4.10079888997112	4.02660217323386	4.07684727769341	4.22555334129873	4.13043497371324	4.19171977257601	-0.096804819572831	0.812062664820849	0.927419976441895
Merged-chr16-32430889-4	chr16	32430772	32430972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009981)	promoter-TSS (NM_009981)	-49.0	NM_009981	13026.0	Mm.98775	NM_009981	ENSMUSG00000005615	Pcyt1a	CTalpha|Cctalpha|Ctpct|Cttalpha	phosphate cytidylyltransferase 1, choline, alpha isoform	protein-coding	7.40235353372236	7.513283188611	6.94513703627444	7.17948560571366	7.53471665005194	7.62898980439768	7.48837431639466	7.64755322278277	0.398156495774855	0.0419301219809146	0.207461709473065
Merged-chr8-107574948-2	chr8	107574848	107575048	+	543.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	13534.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	2.73050993420018	2.43565106965739	2.5750264289538	2.19199642102745	3.02333218229414	3.05466222874012	3.52121735713953	3.22111835832309	4.10899257030762	6.73009555349903e-07	2.43539131368839e-05
Merged-chr2-151576235-4	chr2	151576091	151576291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145535, intron 1 of 8)	CpG	3568.0	NM_145535	228765.0	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	6.30280328899617	6.00505800765222	6.24912904386303	6.36372627318371	6.1371030653205	6.13336125644361	6.2537436286588	5.99818840080082	-0.168255779704871	0.47276177909224	0.750813509315392
Merged-chr18-65687158-5	chr18	65686957	65687157	+	797.899048	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_207255, exon 6 of 6)	exon (NM_207255, exon 6 of 6)	-11211.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	3.51834689859344	3.19193296403068	3.35691150940637	3.50287415162729	3.46062611431312	3.41008657503521	3.34453481876846	3.41135631226252	0.0162903320795902	0.974857630599093	0.990979724488552
Merged-chr12-52304122-4	chr12	52304009	52304209	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 9 of 10)	intron (NM_029760, intron 9 of 10)	176500.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	4.90423490230834	4.50692030634602	4.78950989174161	4.89460698747612	5.24454828811997	5.21736675685307	5.20231998340477	5.13634631894259	0.796091565976321	0.0124511450174163	0.0921992192587966
Merged-chr6-136847990-4	chr6	136847903	136848103	+	846.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026639)	TTS (NM_026639)	9597.0	NM_026639	109978.0	Mm.31840	NM_026639	ENSMUSG00000030217	Art4	4432404K01Rik|ARTC4|DO|DOK1	ADP-ribosyltransferase 4	protein-coding	4.71686838555722	4.28024614188117	3.84475726353898	4.54466985471809	4.36824995222963	3.96773795138244	4.29194793025653	4.30863162704339	-0.342608417258839	0.447212582120213	0.73281791018773
Merged-chr12-52390451-4	chr12	52390357	52390557	+	788.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90152.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	4.17859697879183	3.88338000372838	4.08613654460106	4.40690214777859	4.20360177720322	4.1084449477096	4.11572043278619	4.22071039583318	-0.0123150489237449	0.976784293697476	0.991720216827031
Merged-chr3-96240374-4	chr3	96240338	96240538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013549).2	promoter-TSS (NM_013549).2	-64.0	NM_178212	319192.0	Mm.5220	NM_178212	ENSMUSG00000063954	Hist2h2aa2	H2a-614|H2a-615	histone cluster 2, H2aa2	protein-coding	6.7977075878467	6.68868556868533	6.56292214620279	5.76425222713862	6.4040297897993	6.12396025874887	6.25858529460945	6.20816757007931	-0.361187846347258	0.217565761406548	0.52452626104717
Merged-chr13-54828756-3	chr13	54828665	54828865	+	697.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39360.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	3.06418547456622	3.24908889185649	2.991056116591	2.4387121320278	3.75779329105726	3.25316895316658	3.87407838371837	3.59130993162732	2.4481815636977	0.000786342158329548	0.0110855711007603
Merged-chr8-125559276-3	chr8	125559215	125559415	+	756.833313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	10548.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	3.38202121430924	3.46685517069359	3.65396578228795	3.57188968719767	3.48277890104895	3.36814035270678	3.8178774787355	3.38076289827175	0.00458411087973506	0.992851609678926	0.997433872372499
Merged-chr11-20632857-1	chr11	20632757	20632957	+	618.0	f0_c57.idr	intron (NM_001038625, intron 1 of 1)	intron (NM_001038625, intron 1 of 1)	880.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	4.20243545792987	4.03085541068055	4.3387770762525	3.67060366551244	4.35490839497678	4.28302478060319	4.8055305440542	4.4189748145868	1.00730727772039	0.0208273098370849	0.131561570660613
Merged-chr16-17891179-1	chr16	17891079	17891279	+	734.0	f0_balb.idr	intron (NM_001109750, intron 1 of 9)	CpG	549.0	NM_010048	13356.0	Mm.254515	NM_010048	ENSMUSG00000003166	Dgcr2	9930034O06Rik|DGS-C|Dgsc|Idd|Lan|Sez12|mKIAA0163	DiGeorge syndrome critical region gene 2	protein-coding	4.34434533158418	4.08113164723307	4.6206473222716	4.11163078147762	4.08996429692258	4.23160883837527	4.63263548587047	4.65231488397652	0.290448396858975	0.495524269421637	0.765843490894858
Merged-chr11-86807147-3	chr11	86807055	86807255	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026191, intron 1 of 17)	intron (NM_026191, intron 1 of 17)	505.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	3.14896338886966	3.61005799969615	3.21478468378754	3.29677714184442	3.2956276717406	3.45078619717045	3.32437027157532	3.64370572346489	0.349589940213724	0.518649227799822	0.779675989312394
Merged-chr19-4228484-4	chr19	4228410	4228610	+	921.3624880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132308, intron 2 of 3)	intron (NR_132308, intron 2 of 3)	-3383.0	NM_027196	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	4.54011932436155	4.41390630420813	4.12254618404274	4.25774054015688	4.30599467283889	4.82493089987372	4.39565190520809	4.85223537835492	0.614211194635715	0.122368774933729	0.387631821584687
Merged-chr2-11205197-4	chr2	11205101	11205301	+	851.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	MTD|LTR|ERVL-MaLR	32819.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	4.07205543472964	4.009012717988	4.3540880429871	4.22986386236999	4.36807597631988	4.29979076406565	4.59645650630793	4.39270272135624	0.582566880166539	0.135951042498965	0.410349387415563
Merged-chr3-93555310-4	chr3	93555179	93555379	+	882.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009112, intron 1 of 2)	CpG	162.0	NM_009112	20194.0	Mm.1	NM_009112	ENSMUSG00000041959	S100a10	42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11	S100 calcium binding protein A10 (calpactin)	protein-coding	3.92268632925538	3.67943072281436	4.17821502353859	3.85133584711969	3.76893224591282	3.78162312769758	3.59113744192364	3.87295029970029	-0.453706091372975	0.330665459634171	0.642002038986953
Merged-chr11-102697737-4	chr11	102697606	102697806	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025918)	promoter-TSS (NM_025918)	19.0	NM_025918	52715.0	Mm.277638	NM_025918	ENSMUSG00000020925	Ccdc43	2610001E01Rik|D11Ertd707e	coiled-coil domain containing 43	protein-coding	4.9086662307118	5.18167564035154	4.68149350660732	4.60530167216647	4.9508860694171	4.85769653806334	4.77788824085833	4.90617400435392	0.0464062454318509	0.893902120124063	0.960450328240811
Merged-chr15-55196570-4	chr15	55196488	55196688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037937, intron 4 of 8)	intron (NM_001037937, intron 4 of 8)	63152.0	NM_001037937	97998.0	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	7.70539979158934	7.42399372744647	7.60020466508858	7.94181278542306	7.2563854343265	7.30609656239641	7.41838678029792	7.3810641735449	-0.467948160425184	0.0151816448806569	0.105797366453914
Merged-chr10-120366391-6	chr10	120366442	120366642	+	821.930542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010441, intron 4 of 4)	intron (NM_010441, intron 4 of 4)	-22981.0	NR_040626	320626.0	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	3.77830022384635	3.53932443578419	3.77887311995857	3.89716441166939	3.16701862457963	3.57329797574201	3.55962217614528	3.67818042545481	-0.832208957172532	0.110647569093206	0.367426327057863
Merged-chr19-11411744-3	chr19	11411651	11411851	+	875.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029499, intron 1 of 6)	intron (NM_029499, intron 1 of 6)	4090.0	NM_029499	64380.0	Mm.440715	NM_029499	ENSMUSG00000024675	Ms4a4c	5830413L19Rik|AI449185|Ms4a9	membrane-spanning 4-domains, subfamily A, member 4C	protein-coding	3.74383385352199	3.55196436089286	3.88457596434995	3.57929006950153	3.29672483804322	3.70494313757016	3.57283153965789	3.79053820334709	-0.292218154227364	0.562496977576131	0.805707247859895
Merged-chr6-54160844-4	chr6	54160732	54160932	+	979.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	-104026.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	5.42655028009973	5.34389093082444	5.50794072697864	5.65510067113366	4.92782540722813	5.36018643795334	5.09037869803619	5.39570962774155	-0.546769867770118	0.0712848717999191	0.286471651414095
Merged-chr8-69023533-4	chr8	69023434	69023634	+	831.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-65202.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	4.49548644860832	4.62032689892437	4.49620131422699	3.89013481487651	4.77962949755747	4.83581903374545	4.55992233085615	5.16256120485281	0.997982417102203	0.0142250464993367	0.101038821650114
Merged-chr16-58523181-4	chr16	58523066	58523266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_018784, exon 1 of 11)	5' UTR (NM_018784, exon 1 of 11)	260.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	5.6478312928666	6.02822524366453	5.75375033691254	5.76719172303713	5.70612399246394	6.11458474882399	5.9103348560922	5.84651205425246	0.137743084629403	0.595700442394058	0.824111519487797
Merged-chr2-130491003-4	chr2	130490916	130491116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	40738.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	5.68507747295985	5.21720123896049	5.73480966427539	5.75495804049824	5.3524659676661	5.8843735632702	5.6572105223047	5.70662032207954	0.0554165778553745	0.85095014620065	0.943782817108763
Merged-chr8-70729377-3	chr8	70729273	70729473	+	753.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201607, intron 3 of 16)	intron (NM_201607, intron 3 of 16)	5309.0	NM_201607	110385.0	Mm.255180	NM_201607	ENSMUSG00000031842	Pde4c	Dpde1|E130301F19Rik|dunce	phosphodiesterase 4C, cAMP specific	protein-coding	3.2809524098532	3.41394791460341	3.33513055283995	2.63312391829381	3.49295931971787	3.08591307292885	3.03095671672872	2.90192079718808	-0.207664354869567	0.76209370737437	0.906789722625838
Merged-chr10-61706646-4	chr10	61706533	61706733	+	948.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-8630.0	NM_178058	71361.0	Mm.286309	NM_153779	ENSMUSG00000020085	Aifm2	5430437E11Rik|Amid|D730001I10Rik|PRG3	apoptosis-inducing factor, mitochondrion-associated 2	protein-coding	4.06368844660486	4.75978277335325	4.68518161479316	4.19907753358601	4.47881454829944	4.35261247335131	4.66246270099821	4.45155061758437	0.0848785803060004	0.836963100078863	0.938132001645803
Merged-chr19-34244236-3	chr19	34244167	34244367	+	908.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007392, intron 7 of 8)	intron (NM_007392, intron 7 of 8)	11106.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	4.07353842812581	3.86312521526414	3.90087926267349	3.65535876095527	4.97838394952809	4.49918021120704	4.61698790878223	4.86207428702314	2.17705910548221	4.2230753970046e-08	1.96959985010068e-06
Merged-chr8-105938017-4	chr8	105937834	105938034	+	988.4027710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013640, intron 1 of 7)	intron (NM_013640, intron 1 of 7)	458.0	NM_013640	19171.0	Mm.787	NM_013640	ENSMUSG00000031897	Psmb10	Mecl-1|Mecl1	proteasome (prosome, macropain) subunit, beta type 10	protein-coding	3.68913839126522	3.8047630336001	3.83875760967965	3.70367371736569	3.69277820075739	3.44139544818329	3.86759814806293	3.6338561674667	-0.26414618865354	0.576897191862761	0.813804851948144
Merged-chr1-93478924-4	chr1	93478814	93479014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159718)	promoter-TSS (NM_001159718)	3.0	NM_133808	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	8.68239839566442	8.85648344734996	8.73542506957943	8.44565057461534	8.7989085000011	8.98323152303764	8.95684503066694	8.55356794210759	0.186409738970121	0.28285481793668	0.595041976860567
Merged-chr19-53904033-4	chr19	53903909	53904109	+	960.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168491, intron 1 of 11)	CpG	658.0	NM_001168491	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	4.47585930990976	4.12803013188495	4.6301715476372	4.74320408493631	4.10591123737198	4.64821635870576	4.18719352770986	4.47367829731065	-0.367419961382469	0.379798836722493	0.682282195090949
Merged-chr2-173769375-4	chr2	173769270	173769470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 2 of 5)	intron (NM_019806, intron 2 of 5)	31799.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	6.01608773991942	5.71274583939045	5.71067154062848	5.75977215787064	5.41921999400244	5.30630818222021	5.7765584634392	5.75523039832486	-0.375682404989247	0.175474065430499	0.470205492725876
Merged-chr2-23067751-2	chr2	23067651	23067851	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028793)	promoter-TSS (NM_028793)	-450.0	NR_149742	74159.0	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	3.98905082299004	4.15141308702666	3.82912002539742	4.10301045097883	4.13911150120932	4.30189343196955	4.02194023457155	4.0841238929144	0.277654588788489	0.505541274396845	0.771488881809541
Merged-chr6-42299574-4	chr6	42299473	42299673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013491, exon 10 of 23)	exon (NM_013491, exon 10 of 23)	12888.0	NM_013491	12723.0	Mm.386757	NM_013491	ENSMUSG00000029862	Clcn1	Clc-1|Clc1|SMCC1|adr|mto|myotonia|nmf355	chloride channel, voltage-sensitive 1	protein-coding	5.95989442056447	5.67916343227483	6.34469739318016	6.38933435710101	5.86725151939682	5.99573497272128	6.03737704886782	5.81445785774692	-0.325337158673893	0.237121691766214	0.547279017452248
Merged-chr7-122099314-4	chr7	122099201	122099401	+	875.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153798, intron 1 of 3)	intron (NR_153798, intron 1 of 3)	2547.0	NR_153798	70316.0	Mm.3014	NM_028177	ENSMUSG00000030869	Ndufab1	2210401F17Rik|2310039H15Rik|2610003B19Rik|8kDa|9130423F15Rik|ACP|CI-SDAP|SDAP	NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	protein-coding	3.75544668786503	3.83057646557949	3.90545927670152	3.81770515755424	3.72562482093502	4.07367717949456	3.68763479677875	3.64384956748586	-0.111339658867874	0.80772407527049	0.92582798360164
Merged-chr10-44460295-4	chr10	44460202	44460402	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1554.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.51130165700469	4.88979430865218	4.257070405273	4.87529535524194	5.39106250390101	4.82168577228069	4.44506131578412	5.15349421309272	0.679557597254409	0.10404760936332	0.354523924694676
Merged-chr18-46574403-4	chr18	46574312	46574512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173394, exon 1 of 3)	5' UTR (NM_173394, exon 1 of 3)	121.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	6.09538214240063	6.15569288867086	6.31907670593773	6.15087405152852	5.58309629305075	5.56446602801448	6.04483077975054	6.33139762596451	-0.413786438445078	0.139393913623628	0.415146612711589
Merged-chr4-34958606-4	chr4	34958570	34958770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 3 of 3)	intron (NM_178061, intron 3 of 3)	-47189.0	NR_040652	73696.0	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	4.03000902399197	3.91089628545717	4.39500719960026	4.01352207085612	3.91960258372794	3.77067021773669	4.01312951634935	3.87911755508998	-0.527021578258661	0.234780967706138	0.544671297409607
Merged-chr2-18608358-3	chr2	18608252	18608452	+	733.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64110.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	3.56352023662763	3.47212611701123	3.61398864605185	3.37540411780594	3.52942219071066	3.18550659676149	3.33024671130042	3.61182656772979	-0.243992681812319	0.641344572611313	0.848684971999741
Merged-chr12-81780760-3	chr12	81780669	81780869	+	915.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177395, exon 1 of 8)	exon (NM_177395, exon 1 of 8)	401.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	3.61021919992843	3.71641408490716	3.82327509807206	3.84399605151062	3.72162631362898	4.12851309094747	3.70634860330126	3.48830338105176	0.0642906795678067	0.894370621411761	0.960505846004221
Merged-chr19-45650148-4	chr19	45650003	45650203	+	906.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 1 of 8)	B2_Mm2|SINE|B2	10090.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	5.44103835347393	5.03399088228574	5.56218008582044	5.45486175777273	4.69154290709138	4.4344855757276	4.77536275435215	5.30520561744837	-1.04407190248798	0.00449714503666713	0.0439278559853066
Merged-chr18-46152606-4	chr18	46152485	46152685	+	963.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46233.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	4.63164722070727	4.32354623776198	4.08608868834127	4.37631793030209	4.63033961827227	4.60546399481101	4.68175521313833	4.59172182701912	0.58337250356753	0.115212348397541	0.37550998280921
Merged-chr4-44756221-4	chr4	44756113	44756313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138590)	promoter-TSS (NM_138590)	-346.0	NM_138590	319885.0	Mm.331576	NM_138590	ENSMUSG00000035649	Zcchc7	4930572I07Rik|D4Wsu132e	zinc finger, CCHC domain containing 7	protein-coding	6.10510194473444	6.18394874807307	5.99910776030779	6.06445776838602	6.39477382158415	5.90508958455206	6.26405906017382	5.97230780482277	0.114264615866289	0.642073123422838	0.848992640896773
Merged-chr6-48445517-4	chr6	48445454	48445654	+	973.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085415)	promoter-TSS (NM_001085415)	271.0	NM_020589	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	4.8904020445239	4.57443382018748	5.10906319985721	4.6064925382966	4.65245370217449	4.53183563254773	4.79817473402111	4.92140491635423	-0.138869080083583	0.701839036203944	0.879887873504074
Merged-chr7-90136996-4	chr7	90136898	90137098	+	980.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	B2_Mm1t|SINE|B2	6785.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	5.18912253912457	5.10222673404482	4.81819703995739	4.66930977480903	4.52362268194512	5.14047021584516	5.1044823550649	5.18638182239219	0.106656622218642	0.770360119490308	0.910151645456233
Merged-chr4-75297665-4	chr4	75297575	75297775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-19383.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	4.42636848312307	4.69581283032617	4.47941321545534	5.18691275999377	5.45180704218298	5.32481290412875	5.44797577195195	5.0522460149663	1.07423963060568	0.00545228158691603	0.0506305328350668
Merged-chr7-142967649-3	chr7	142967539	142967739	+	831.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008554, intron 2 of 2)	CpG	1625.0	NM_008554	17173.0	Mm.196417	NM_008554	ENSMUSG00000009248	Ascl2	2410083I15Rik|Mash2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding	3.64654248252837	3.80307532316902	3.41339301471317	3.26463574950817	3.89757598295913	3.59250128335726	3.87232119168596	3.6973444502437	0.728321884362258	0.147862847168089	0.429300440470608
Merged-chr8-128595123-4	chr8	128595011	128595211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90543.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	6.61155286757732	6.08420666485103	6.38770911092454	6.73129994923956	6.35264072685544	5.79667123069826	6.53416812551576	6.43483314308966	-0.254976723361721	0.348530160051552	0.656287566697246
Merged-chr1-162548554-4	chr1	162548449	162548649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144877)	promoter-TSS (NM_144877)	-204.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	7.86109757864815	7.62877143420542	7.50935129674975	7.7681480915719	7.67087587003642	7.68681436659738	7.82437957231877	7.48507390622942	-0.0381617921159696	0.831611092311331	0.93552984387709
Merged-chr5-137075758-4	chr5	137075647	137075847	+	811.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3475.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	3.97828046364815	3.98556425052947	3.97886066120027	3.88971050291112	4.06170599651598	4.10086343995451	3.96208115311211	3.92722689779217	0.17286575712229	0.678077914316515	0.867974866493993
Merged-chr7-27342765-3	chr7	27342694	27342894	+	913.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138676, intron 16 of 17)	intron (NM_138676, intron 16 of 17)	-5182.0	NM_175641	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	3.52325608138382	3.33214004504806	3.21953821242493	2.85948495969413	4.37221599805975	4.84219997443875	4.38966704691612	4.21614214342118	3.90530810966647	2.60339882209976e-13	3.12491272779493e-11
Merged-chr13-37893219-3	chr13	37893119	37893319	+	948.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 3 of 9)	intron (NM_001039188, intron 3 of 9)	4348.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.96846026371122	3.63199798606286	4.01500865671721	4.1712244184398	3.96316392624207	3.57622706765607	3.85588413598174	4.01253523423615	-0.286802801563244	0.54637682077963	0.796350145922542
Merged-chr14-27123714-4	chr14	27123622	27123822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20271.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	7.85676292381394	8.14062998793154	7.9726778892544	7.5815670534942	7.14528786284187	7.4755471303023	7.50975217187067	6.8929303140499	-0.822784048444845	0.000188906588208479	0.00346819242767379
Merged-chr6-87451636-3	chr6	87451519	87451719	+	909.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22625.0	NM_009756	12154.0	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	b2b2711Clo	bone morphogenetic protein 10	protein-coding	3.68106913570568	3.99190417182845	3.91785933476841	3.4741199199721	3.28085202060229	3.80193660667799	3.31577728941742	3.51394290694504	-0.919927237824435	0.088203531108635	0.323971317149955
Merged-chr19-12833773-4	chr19	12833671	12833871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361971)	TTS (NM_001361971)	-28006.0	NM_146702	258697.0	Mm.223132	NM_146702	ENSMUSG00000046272	Olfr1444	MOR202-4	olfactory receptor 1444	protein-coding	7.72511464744532	7.40388561039104	7.36291419504771	7.51760314703759	7.15931226770316	6.87063779108229	6.9788647005205	6.79835908148564	-0.734119163377252	0.00022267571328975	0.00397837213761324
Merged-chr4-150237134-4	chr4	150237059	150237259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025388).2	promoter-TSS (NM_001025388).2	-38.0	NM_023119	13806.0	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding	7.78113166580873	8.00563103326271	7.2847214759498	7.74346019089092	7.90108006623261	8.13651378307323	8.01298548044589	8.15573970187277	0.413842821765531	0.0371104826798035	0.192122121366334
Merged-chr13-23583261-9	chr13	23583234	23583434	+	862.5031130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178194)	TTS (NM_178194)	1732.0	NM_175654	319156.0	Mm.260530	NM_175654	ENSMUSG00000061482	Hist1h4d	-	histone cluster 1, H4d	protein-coding	3.94507132716848	4.64851511483536	3.77458694335602	3.76039177367485	3.89376799973111	4.12379936372959	4.21344748890752	4.39119108034201	0.194028939717286	0.695239041054976	0.876486356770318
Merged-chr4-87368271-4	chr4	87368192	87368392	+	954.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137752.0	NM_172426	76376.0	Mm.490487	NM_172426	ENSMUSG00000037996	Slc24a2	2810021B17Rik|6330417K15Rik|AI847460|Nckx2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding	4.86708702484275	4.76860812861645	4.68613898926862	4.60460050627387	4.78229807157397	4.65143913694285	4.87743187350791	4.51670531343155	-0.0150671478748731	0.965145427341903	0.98769425730755
Merged-chr11-87591206-3	chr11	87591095	87591295	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357901)	promoter-TSS (NM_001357901)	-971.0	NM_001357901	170749.0	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding	3.11446890378794	3.016758663413	3.45820994517662	2.90856017248494	3.32725022697182	3.35426488235945	3.16712501499095	3.59826306982927	0.882892527175655	0.125038912071081	0.392509138800769
Merged-chr5-43786773-4	chr5	43786667	43786867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-4618.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	7.05712391574663	6.78183142169949	7.18937218879299	7.31997697665136	6.46773831643673	6.64492462866398	6.69691339860068	6.46152029515066	-0.766322052693243	0.000457744002922857	0.00718609624703265
Merged-chr14-55105744-4	chr14	55105616	55105816	+	767.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007455, intron 2 of 21)	PB1D9|SINE|Alu	877.0	NM_001303502	11766.0	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	4.22353675059671	3.96223045498517	4.04474119294394	3.31673349762153	4.12597519373916	4.12184602340549	4.46499788143259	3.83442482655879	0.603313869812349	0.237958159057569	0.548249621400878
Merged-chr13-112084641-4	chr13	112084550	112084750	+	970.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-203801.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	4.81315990735249	4.88108358321267	4.92248737889076	4.94275712706774	4.71169313096043	4.98756800966962	4.99788372058162	4.81077554044537	-0.042869432949439	0.894586096808313	0.960637465802637
Merged-chr10-80931137-2	chr10	80931037	80931237	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008655, exon 3 of 4)	exon (NM_008655, exon 3 of 4)	1046.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	3.7858174352294	3.7785900082596	3.41868705085526	3.55640333032864	4.39834766054881	4.06169919412487	3.87270537714221	3.93564583664017	1.27492971719978	0.00652160542438154	0.0577508525133184
Merged-chr11-79993070-4	chr11	79992983	79993183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163018)	promoter-TSS (NM_001163018)	-23.0	NM_001163018	52615.0	Mm.283410	NM_199196	ENSMUSG00000017548	Suz12	2610028O16Rik|AI195385|AU016842|AW536442|D11Ertd530e|mKIAA0160	SUZ12 polycomb repressive complex 2 subunit	protein-coding	7.34890134310048	7.1955004142517	6.86514389894136	7.13499220270761	7.38389251397715	7.35925337864414	7.05371457813864	7.10831840337889	0.123402346901269	0.542562454455744	0.793895630500676
Merged-chr3-20154992-4	chr3	20154899	20155099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013755, exon 1 of 7)	exon (NM_013755, exon 1 of 7)	117.0	NM_001355261	27357.0	Mm.6375	NM_013755	ENSMUSG00000019528	Gyg	AU017667|GN1|Gyg1	glycogenin	protein-coding	5.74861486884885	6.34358780844056	6.2692498451821	6.03230647971015	5.78398487896581	5.67464230604933	5.55720796175691	5.79593092604564	-0.653040341759564	0.0145931297167358	0.102799683484031
Merged-chr2-71047377-3	chr2	71047253	71047453	+	814.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	intron (NM_145524, intron 1 of 9)	8253.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	3.13508075081387	2.97055993631327	3.01758920243439	3.13669524281841	2.68053625353553	2.85188768628315	3.1230183472308	3.34075642482006	-0.186885228100208	0.770465997954238	0.910208520553554
Merged-chr8-19785318-2	chr8	19785218	19785418	+	854.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270553, intron 6 of 9)	intron (NM_001270553, intron 6 of 9)	55742.0	NM_001039553	626415.0	Mm.425517	NM_001039553	ENSMUSG00000096265	4930467E23Rik	TSAP	RIKEN cDNA 4930467E23 gene	protein-coding	3.01007104299136	3.1077164670864	2.94763533548491	2.81848463671518	3.04860016024343	3.18095377183493	2.99971860335923	3.06874222990411	0.448215329530015	0.436927550289814	0.725408654678613
Merged-chr15-102459111-4	chr15	102459021	102459221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170911)	promoter-TSS (NM_001170911)	-49.0	NM_001170911	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	6.74327251635626	7.12938541690978	6.17654040919015	6.68279057907496	7.06965422905097	7.11206456671679	6.80900108240149	6.85250812405037	0.334615726413523	0.179612624842874	0.475824186021704
Merged-chr9-59544449-1	chr9	59544349	59544549	+	983.0	f0_balb.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	4909.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	4.493821654355	4.2681863370582	4.49453456066801	4.58848983048321	4.43672182423481	4.74000284662763	4.2095429097304	4.40823198802435	-0.0315611351303435	0.934499212156476	0.976356212091203
Merged-chr16-33573933-4	chr16	33573830	33574030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 4 of 11)	MIR3|SINE|MIR	55335.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	7.94628656486132	8.21232432302919	7.73665134226975	7.6647207915155	8.05370260213432	8.10414721900857	7.86002087149516	7.52686748350844	0.0031655256639318	0.987946477399561	0.995370064932717
Merged-chr4-107922155-3	chr4	107922058	107922258	+	804.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009949, intron 1 of 4)	intron (NM_009949, intron 1 of 4)	1431.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	3.63241025163413	3.53363496495645	3.30165761028134	3.81063087119165	3.43532152562719	3.47592040850551	3.35131210246467	3.36144966152661	-0.631664279565167	0.228252566218002	0.537085520731977
Merged-chr2-156863975-4	chr2	156863882	156864082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026124, intron 1 of 3)	intron (NM_026124, intron 1 of 3)	860.0	NM_026124	67388.0	Mm.29264	NM_026124	ENSMUSG00000027637	1110008F13Rik	AI316789	RIKEN cDNA 1110008F13 gene	protein-coding	7.04567719103813	7.12101418894432	7.04690527055865	6.96978864254922	6.76434981696006	6.87236301918566	6.83488186993417	6.60972796090727	-0.378128421698468	0.0507344564591381	0.233532538295682
Merged-chr11-98149733-4	chr11	98149665	98149865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028149)	promoter-TSS (NM_028149)	-149.0	NM_028149	72194.0	Mm.218350	NM_028149	ENSMUSG00000020883	Fbxl20	2610511F20Rik|4632423N09Rik|AI849362|AL117906|C86145|Fbl2|Scr|mKIAA4147	F-box and leucine-rich repeat protein 20	protein-coding	5.72767929926621	6.25678162949402	5.67530068165198	5.80539910389365	6.04980231268914	6.07678603363437	5.84820554922577	6.35517797644045	0.324534508582988	0.233766322552277	0.543492448306542
Merged-chr3-94886927-4	chr3	94886843	94887043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008945)	promoter-TSS (NM_008945)	15.0	NM_008945	19172.0	Mm.368	NM_008945	ENSMUSG00000005779	Psmb4	Pros-27	proteasome (prosome, macropain) subunit, beta type 4	protein-coding	5.76108964050172	5.7044178862225	5.49066918877683	5.92125906821387	6.14484488685575	5.88702809546109	5.6831629490758	5.85288565181496	0.276316977510542	0.306769153830907	0.619148824695328
Merged-chr9-95180665-4	chr9	95180571	95180771	+	883.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 14 of 15)	intron (NM_177909, intron 14 of 15)	226599.0	NM_018763	54371.0	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	4.09810757599776	4.2962556278335	3.85890622434505	4.33780777631201	3.95027652565312	3.54411346052416	3.61669221192601	3.95794007271323	-1.05408897928841	0.0289702725442476	0.163552905252776
Merged-chr13-23576167-3	chr13	23576069	23576269	+	999.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178204)	TTS (NM_178204)	406.0	NM_178204	319149.0	Mm.347699	NM_178204	ENSMUSG00000099583	Hist1h3d	H3-b	histone cluster 1, H3d	protein-coding	4.52617513214522	4.72865432285385	4.04753413762626	3.98907356367216	4.24154977386945	4.70044055713932	4.28953630008732	4.98822608974323	0.519675258419108	0.253241139989427	0.564547937715163
Merged-chr9-99109800-4	chr9	99109709	99109909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	30402.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	7.0950758189612	6.69731333425892	7.07353524067777	7.30524639431484	6.92333700815126	6.44338197267734	6.879341006104	6.61704490249062	-0.461599039063384	0.0474232001828548	0.224357611502351
Merged-chr12-85345113-4	chr12	85344988	85345188	+	947.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-5726.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	4.41672469922205	4.47171129174609	4.53713324476227	4.55226310405781	4.22365024931637	4.4127965922452	4.17151797771462	4.37212249806346	-0.488259971302174	0.192672034490452	0.49244866038263
Merged-chr12-75733876-12	chr12	75733787	75733987	+	829.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030750, intron 1 of 2)	intron (NM_030750, intron 1 of 2)	1842.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	4.00186153524113	4.27628094052394	4.04992740328801	4.1011281415742	4.12749312257687	3.72842494812128	3.98557932676889	3.89968077805149	-0.427488945622768	0.326976467071271	0.638589065790286
Merged-chr10-121488836-4	chr10	121488731	121488931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12581.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	8.47399603940068	8.34307240033839	8.58210833884059	8.57578719621942	7.90703698398872	7.97479772320733	8.36129528120444	8.0740747938984	-0.521628094809307	0.00263319613035855	0.0288630355264026
Merged-chr15-76783823-4	chr15	76783779	76783979	+	801.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	34291.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	3.80815972575425	3.51868598842923	4.20090943587753	4.01664904150232	3.54266961359884	3.76444389861395	3.79286099257563	3.80649185381885	-0.54328838638803	0.268197088834734	0.5800668667933
Merged-chr17-71287625-6	chr17	71287469	71287669	+	973.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	(CCA)n|Simple_repeat|Simple_repeat	23442.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	4.13133742101145	4.03598067737046	4.40869037454703	3.90278355292329	3.5889529775263	4.16539910746678	3.92506485599625	3.88710247325358	-0.613302478035251	0.188963600831063	0.48779670955222
Merged-chr10-56228831-4	chr10	56228727	56228927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033385)	promoter-TSS (NM_001033385)	-138.0	NM_001033385	544696.0	Mm.411188	NM_001033385	ENSMUSG00000038122	Tbc1d32	Bromi|C6orf170|D630037F22Rik|b2b2284Clo	TBC1 domain family, member 32	protein-coding	6.96518826843193	6.81126413583006	7.40318123685772	7.07291702658566	6.8255994993254	6.90600178184762	6.81126548806491	6.94866787238086	-0.287275803626807	0.174011009505435	0.468259409685355
Merged-chr9-35265361-4	chr9	35265255	35265455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286604, intron 2 of 9)	intron (NM_001286604, intron 2 of 9)	2450.0	NM_175411	109229.0	Mm.24197	NM_175411	ENSMUSG00000050471	Fam118b	2310022O21Rik|2700018L24Rik|C030004A17Rik|Ppp4r1l	family with sequence similarity 118, member B	protein-coding	5.50839117221571	6.03422986276711	5.75367629046389	5.9679691269965	5.76639848654155	5.85293783593859	5.67449266716244	5.72468307991943	-0.147982939384175	0.577600103861684	0.814183257936684
Merged-chr4-56865296-4	chr4	56865202	56865402	+	866.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018761)	promoter-TSS (NM_018761)	-91.0	NM_018761	54366.0	Mm.218891	NM_018761	ENSMUSG00000038816	Ctnnal1	ACRP|AI616177|AW545119|C86009|Catnal1	catenin (cadherin associated protein), alpha-like 1	protein-coding	4.0410843401186	4.10308439642004	4.27892739268165	4.46115289617453	4.20915898130975	4.11168630703166	4.34271861482114	4.35993813095662	0.0259679490145369	0.949398380744728	0.981872090911877
Merged-chr16-11461723-4	chr16	11461618	11461818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	56070.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	7.4236933841849	7.39814826958184	6.97289219403935	7.45987206211418	7.36552124169428	7.46152290233111	7.18307971102767	7.25807830537923	-0.019893445087113	0.919870859387381	0.970406583631903
Merged-chr8-66491976-3	chr8	66491863	66492063	+	814.122253	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5433.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	3.75398110916471	4.10859865066328	3.8710512240925	3.51304768346153	4.39566365033583	4.34173144611035	4.35355376263318	4.16714657789593	1.32847694660004	0.00242742580487001	0.027137072618948
Merged-chr15-6260500-4	chr15	6260396	6260596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39293.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	7.27635300457053	7.30567159830923	7.46722382776477	7.5021737463843	6.79332288172348	6.59522668563859	6.91676021284153	6.93371407316142	-0.795237827545547	4.28197283839399e-05	0.000988283218755012
Merged-chr11-48788832-4	chr11	48788734	48788934	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11526.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	5.2853356263763	5.16710231776106	4.80940648382802	4.92804890566708	5.32250595934755	5.21017973072837	5.14176943893011	4.96135122306162	0.225478045753023	0.478790236506483	0.754690163973656
Merged-chr5-117890843-4	chr5	117890710	117890910	+	980.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 2 of 27)	C-rich|Low_complexity|Low_complexity	23971.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	3.43674153656929	3.68644386708325	4.10350780099631	3.54385120656031	3.97870291050368	3.85521588578804	3.66606863703221	3.93019017282205	0.453704931258852	0.35619560868773	0.662704502355483
Merged-chr11-105901710-4	chr11	105901601	105901801	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181071, intron 17 of 25)	intron (NM_181071, intron 17 of 25)	42786.0	NM_007805	13056.0	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	5.11659732025273	5.28195691096038	4.99638253930775	5.19935522638194	4.5023211723058	4.12567656293189	4.69021362010119	4.23826665328079	-1.56957420573847	2.87030785227686e-05	0.000699197955568839
Merged-chr15-58623642-3	chr15	58623531	58623731	+	741.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	199796.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	3.45778263498569	3.50304861955326	3.40448365106631	3.70979379603438	3.50527271340279	3.27366669169374	3.15407760890015	3.09483840521048	-0.900149926873063	0.10916880544035	0.364864835537339
Merged-chr12-111693463-4	chr12	111693426	111693626	+	777.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15421.0	NM_177374	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	3.44849361287412	3.73958828264142	3.20070815669237	3.00287150880637	3.57683664100779	3.44637918404716	3.37818073976098	3.79200255509899	0.606224780446385	0.288547404926968	0.600558955972299
Merged-chr14-17954235-4	chr14	17954126	17954326	+	845.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 3 of 9)	intron (NM_001113417, intron 3 of 9)	-27418.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	4.23110153985141	4.05850268649113	4.47831004516366	4.64354557245263	3.85509492003408	3.86589026902026	4.41938223286619	4.31661732352381	-0.604786493871087	0.184041554702034	0.48125702884897
Merged-chr3-86110253-4	chr3	86110150	86110350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082414, intron 7 of 14)	intron (NM_001082414, intron 7 of 14)	25816.0	NM_001082414	27059.0	Mm.2454	NM_012059	ENSMUSG00000028082	Sh3d19	AW011754|Kryn	SH3 domain protein D19	protein-coding	6.37084668378892	6.22663989619585	5.93465465242609	6.37875564570414	6.4920585832128	6.61547174145691	6.50323193519599	6.0488937422542	0.274460285534064	0.266731900361349	0.578409393608959
Merged-chr2-130424309-4	chr2	130424197	130424397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030559)	promoter-TSS (NM_030559)	-9.0	NM_178762	319513.0	Mm.482539	NM_178762	ENSMUSG00000037773	Pced1a	A930025D01Rik|AI480484|Fam113a	PC-esterase domain containing 1A	protein-coding	6.50096074506539	6.33937125366649	6.05960008942805	6.13136513910725	6.61468346747164	6.81497442567279	6.2959265924254	6.4811347748004	0.448478350380333	0.0594987968575305	0.257114072109712
Merged-chr13-67108697-4	chr13	67108592	67108792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256052, intron 2 of 6)	intron (NM_001256052, intron 2 of 6)	5336.0	NM_001256052	432770.0	Mm.124021	NM_001256052	ENSMUSG00000074824	Rslcan18	mszf51	regulator of sex-limitation candidate 18	protein-coding	7.96382915349292	7.82314811855759	7.67484072543839	8.05215121391341	7.90364335380421	7.88631944573339	8.08025209351893	7.61695833346535	-0.0127965985273788	0.944774698317481	0.980150389907302
Merged-chr12-13358993-4	chr12	13358917	13359117	+	872.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027706, intron 23 of 51)	intron (NM_027706, intron 23 of 51)	89890.0	NM_027706	71169.0	Mm.177520	NM_027706	ENSMUSG00000020576	Nbas	4933425L03Rik|Nag	neuroblastoma amplified sequence	protein-coding	4.35379670521335	4.32842046922501	4.44121177015139	4.89048662390459	4.14080373153584	4.33962733381553	4.50138171270375	4.47958891362526	-0.411803911046747	0.314859034793306	0.626803278913516
Merged-chr4-11088747-3	chr4	11088616	11088816	+	932.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12511.0	NM_001085493	76947.0	Mm.275265	NM_001085493	ENSMUSG00000050323	Ndufaf6	2310030N02Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	protein-coding	4.14481850309877	4.38631310662068	4.46565308567622	4.22297474888639	3.71251774603902	4.12538164198804	3.87949348483101	3.83654908989091	-1.12832175488182	0.00981094422885217	0.0778173834706339
Merged-chr8-94377221-4	chr8	94377113	94377313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9216.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	7.00578078285547	7.25958468975424	6.98109479095483	7.21423443966756	7.22485564563018	7.22187342371115	7.25604613973005	7.06455561855251	0.0883858993815853	0.63941288036925	0.847607151813091
Merged-chr4-102584833-4	chr4	102584746	102584946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	-2712.0	NM_001177982	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	7.13607851549096	6.99077059010417	7.35808062547729	7.25618555088377	6.97461912936684	7.15487290083502	7.26277207929607	6.998912240774	-0.13053492213626	0.505129052636919	0.771276161864626
Merged-chr2-11254142-3	chr2	11254038	11254238	+	819.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 9 of 17)	intron (NM_008859, intron 9 of 17)	81756.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	3.89809945472542	4.06362882240599	3.73821234197127	3.99273142239185	4.12000932793488	3.73660772742917	4.06722081883588	3.89641428026603	0.10019115337294	0.821565542819049	0.931745543040646
Merged-chr15-36500000-4	chr15	36499895	36500095	+	860.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3204.0	NM_175134	68839.0	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	4.8174363387001	4.56781544002659	4.32001974235695	4.21683477778359	4.32538658390909	4.70706883057649	4.15411206621112	4.53241345595174	-0.11319472868249	0.782754937947339	0.915368158906363
Merged-chr11-96400925-4	chr11	96400821	96401021	+	943.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35163.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	5.48582790230226	5.92823058501865	5.88282248397451	5.44511693822122	4.79642589347206	5.68861918405709	4.84360847861193	5.175154392089	-0.941515734371692	0.00774447186393879	0.0656242574765832
Merged-chr2-71660828-4	chr2	71660736	71660936	+	837.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	Arthur1|DNA|hAT-Tip100	-58581.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	3.73808883266875	3.59769540535936	3.8355461933892	3.64023187159731	3.86300298770697	3.57261452769979	3.81904955965364	3.57587811066733	0.067831252852198	0.885448755526151	0.957003157896593
Merged-chr15-5288619-3	chr15	5288542	5288742	+	640.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44455.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	3.00331775222035	3.09571950724039	3.47134754167953	3.39305296982974	3.25463533291026	3.31043203869754	3.30223420864013	3.31331761901237	0.11609303052439	0.835320595779898	0.937309403269814
Merged-chr8-90881040-4	chr8	90880931	90881131	+	929.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	-51218.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	4.36061799727468	3.88536008713862	4.23235465837726	4.20606068251906	4.22949653902985	4.31285568613748	4.56278036992819	4.08661051976501	0.312172308489129	0.450557142226655	0.735357832948579
Merged-chr18-80738364-4	chr18	80738255	80738455	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001201569, intron 28 of 29)	intron (NM_001201569, intron 28 of 29)	-25284.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	6.12189583446227	6.0765363372762	6.26837293548692	6.73391814486343	5.2565784194869	5.27210166265169	5.81365217596721	5.57373526366753	-1.36610145911422	4.96302116078052e-06	0.000147070309410157
Merged-chr7-130866419-6	chr7	130866363	130866563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133942, intron 1 of 9)	CpG	739.0	NM_001346515	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	4.56235246513459	4.32695354675615	4.7760525075075	4.3062236075132	3.9891597225342	4.28624511701584	4.33393672839641	4.89657784433289	-0.190598614922681	0.663512132678409	0.860575753363866
Merged-chr1-173459687-2	chr1	173459580	173459780	+	820.0	f0_balb.idr|f1_balb.idr	intron (NM_001013779, intron 5 of 8)	CT-rich|Low_complexity|Low_complexity	39076.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	3.17330385724622	2.69289525458041	3.02294461756635	3.36922407311746	2.30571589245748	2.53273511038922	2.42028374865228	2.42461474319817	-5.25662439392691	4.3448239945166e-06	0.000130876101187345
Merged-chr8-85801565-4	chr8	85801453	85801653	+	881.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028007, intron 6 of 17)	B3|SINE|B2	39396.0	NM_028007	71927.0	Mm.61018	NM_028007	ENSMUSG00000031703	Itfg1	2310047C21Rik|AI314457|Cda08|D8Wsu49e	integrin alpha FG-GAP repeat containing 1	protein-coding	4.65083946138019	4.16876544227108	4.58325025172865	4.45910027264806	4.1387287292137	3.83352776179427	4.15289903134616	4.30640404402539	-0.864936860217504	0.0398111657990257	0.201172722590434
Merged-chr9-50584830-1	chr9	50584730	50584930	+	638.5	f0_balb.idr	Intergenic	RLTR23|LTR|ERV1	19019.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	2.97501783716258	3.07232968494492	3.19726305371663	3.09083178934335	2.95167555181201	2.73472039306405	3.02325274428613	2.77854153483948	-0.890714520112775	0.150433094513287	0.433044538821344
Merged-chr17-56256680-4	chr17	56256572	56256772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010192)	promoter-TSS (NM_010192)	-121.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	8.68684711884772	8.80628099013409	8.19069256118857	8.58715187240111	8.61904674241782	8.59496745567355	8.64433158345165	8.54267000547411	0.0142643934756426	0.935108561053992	0.976465285317276
Merged-chr4-135873937-4	chr4	135873839	135874039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026383)	promoter-TSS (NM_026383)	-93.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	7.28351417806131	7.61181581339061	6.97795435788118	6.72788333021876	7.51836849840804	7.41924286173567	7.13942863913604	7.2262442832859	0.203256878671536	0.403700045043884	0.700922982752502
Merged-chr4-134401607-4	chr4	134401493	134401693	+	762.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285872, intron 1 of 10)	(GGGTG)n|Simple_repeat|Simple_repeat	-1319.0	NM_001285874	100163.0	Mm.22116	NM_133880	ENSMUSG00000037366	Pafah2	2310074E22Rik|AI507170	platelet-activating factor acetylhydrolase 2	protein-coding	3.42899656212638	3.41816364300767	3.75328091555739	3.44105581500923	3.49671091033873	3.92130195842244	3.78298606394526	3.42769529121756	0.490758174903671	0.332133475511135	0.643150570036646
Merged-chr9-121314246-4	chr9	121314146	121314346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	16744.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	7.37848188698617	7.41971559752273	6.89346454732736	6.77559913412072	7.33281996890312	7.48744451817019	7.35253587863076	6.81589359722943	0.176224243078581	0.472709280466018	0.750781215878538
Merged-chr10-62511671-3	chr10	62511564	62511764	+	886.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 1 of 3)	intron (NM_001358965, intron 1 of 3)	-3907.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	3.44100595664378	3.43003754284084	3.89618526527883	3.65746259206627	3.47675233871959	3.42831539722821	3.74548842108683	3.71156757965105	-0.0767819843735561	0.879549838483222	0.954911763269136
Merged-chr8-46899286-3	chr8	46899183	46899383	+	885.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-87604.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	3.56148703155758	3.43213602885772	3.45257657598061	3.81317994189659	3.65194984687995	3.38017116474944	3.49502008037889	3.45080641632451	-0.270962135917577	0.599265493388663	0.826297287085189
Merged-chr1-82316567-4	chr1	82316474	82316674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029777)	promoter-TSS (NM_029777)	-5.0	NM_029777	76867.0	Mm.226994	NM_029777	ENSMUSG00000026142	Rhbdd1	4930418P06Rik|RRP4|mRHBDD1	rhomboid domain containing 1	protein-coding	7.76848538959569	7.55128423437845	8.04034664786548	8.05359914325328	7.591724655128	7.86525908975804	7.88130736804222	8.10948242871994	-0.00493211761329609	0.9804939777424	0.99281244474172
Merged-chr6-92214894-4	chr6	92214798	92214998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030081)	promoter-TSS (NM_030081)	-87.0	NM_030081	78287.0	Mm.290734	NM_030081	ENSMUSG00000014550	Rbsn	5330426D11Rik|Zfyve20	rabenosyn, RAB effector	protein-coding	7.34261624668969	7.63464953209511	7.52838407091657	7.39503345351413	7.59952755099018	7.52093579675933	7.50918639666843	7.45830083454747	0.0640852069539707	0.714888430279222	0.886003030420421
Merged-chr10-111785702-4	chr10	111785599	111785799	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	88677.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	5.3285273597703	5.54911930299956	5.78593090810328	6.01797950374294	4.99881927162775	4.905608219328	5.41859471490453	5.0170129400247	-1.08971715858042	0.000831093187080814	0.0115992905810246
Merged-chr1-33964820-3	chr1	33964715	33964915	+	951.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 2 of 102)	intron (NM_001276764, intron 2 of 102)	-47010.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	3.98075679594343	4.08386169249766	3.98134966079319	4.17072128514973	3.82306922637936	3.65746618094946	3.86845174888369	3.77751659907561	-0.788475113531898	0.0744725567711974	0.29413395396832
Merged-chr9-90276392-4	chr9	90276300	90276500	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5631.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	4.85234145940511	5.02951743280533	4.93307754774752	5.02771377720677	5.48538496392542	5.44521654582177	5.41181420645716	5.35484448920484	0.837992269263706	0.00392961189518499	0.0395064752948267
Merged-chr5-104943098-1	chr5	104942998	104943198	+	628.0	f0_balb.idr	intron (NM_030239, intron 13 of 15)	intron (NM_030239, intron 13 of 15)	39619.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	3.38829934029209	3.11128011293162	2.91090676431383	2.87391814745198	3.17398981140638	3.28457155493205	3.37383626393413	3.10938754277744	0.615462112634981	0.292288004216915	0.60464613451935
Merged-chr1-72284358-4	chr1	72284283	72284483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175564)	promoter-TSS (NM_175564)	10.0	NM_175564	271711.0	Mm.80318	NM_175564	ENSMUSG00000026188	Tmem169	A830020B06Rik	transmembrane protein 169	protein-coding	8.19795530536516	8.40005680167357	8.28160353756282	8.58489920620051	8.31364239628931	8.10653526222653	8.56164858228549	8.25319799579743	-0.0778166881124042	0.66245160732537	0.860057327091883
Merged-chr11-97404409-5	chr11	97404309	97404509	+	752.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41858.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	4.20746603762348	4.0617149864186	4.0390772045209	4.02890758665619	3.96108887308384	3.8534745224977	3.53868302127167	3.78801975814349	-0.788096189605761	0.083123954101962	0.31333368262583
Merged-chr1-170932336-3	chr1	170932231	170932431	+	733.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B1|LTR|ERVL	-4748.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	3.28600560031182	3.32878289875485	3.78444528667022	3.8585695218593	3.39508927776615	3.12779434803772	3.21330460222145	3.08878974919521	-1.34202888386877	0.0245423508414737	0.146539719029046
Merged-chr1-65227882-4	chr1	65227778	65227978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310624, intron 12 of 41)	intron (NM_001310624, intron 12 of 41)	41193.0	NM_011086	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	6.62328914764352	6.35260882361623	7.19354466311002	7.55257204542453	6.23170645119696	6.09274984001286	6.38801147814525	6.61970454369135	-0.972377520503897	0.00140426669660873	0.0177066960492316
Merged-chr10-81429765-4	chr10	81429659	81429859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ZP3AR|Satellite|Satellite	-2586.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	6.86705441613886	6.97363724118444	6.46284543504818	6.86795706687791	6.82205370502535	6.91874253623373	6.8466265724773	6.75201951366323	0.0294665886200165	0.888139770066023	0.958035048245529
Merged-chr11-70655072-4	chr11	70654961	70655161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011072)	promoter-TSS (NM_011072)	-411.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	6.70728317482853	6.278765923076	5.97471349868775	6.01066310399418	6.92368052505732	6.65646948456224	6.55820728032624	6.38948133886921	0.568356978294297	0.0316580490729971	0.173484354066276
Merged-chr12-79813973-4	chr12	79813868	79814068	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009014, exon 11 of 11)	3' UTR (NM_009014, exon 11 of 11)	110765.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	4.56685824756857	4.59910541121991	4.88144658425634	4.73101565540221	4.92569610012494	4.94570363349595	4.92503646249693	4.87815937071463	0.444624878665929	0.174186931775132	0.468536831756677
Merged-chr19-11092285-4	chr19	11092212	11092412	+	822.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11209.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	3.55217789962377	3.73549303804068	3.32492175503678	2.97788307049842	3.40221076177887	3.50248628581148	3.7723446719915	3.25975955912864	0.235062925387321	0.686528279512609	0.871787672169905
Merged-chr8-128941435-3	chr8	128941337	128941537	+	807.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	124055.0	NM_029061	74703.0	Mm.196017	NM_029061	ENSMUSG00000025808	Ccdc7a	4930517G15Rik|4930540C21Rik|Biot2|Ccdc7	coiled-coil domain containing 7A	protein-coding	3.70254882597554	3.21378746404063	3.32608205411481	2.91756908894647	3.83135279732439	3.31050594878196	3.63911739277237	3.60390846996631	0.992306009677957	0.0880213104057843	0.32365269415091
Merged-chr10-19077916-1	chr10	19077816	19078016	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-62506.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	5.47121374618802	6.29668696939289	5.09588122146769	4.50094058172684	5.45412713998293	5.80003276353288	4.91794706533765	4.93858143029784	-0.333368033468426	0.63548028665317	0.845728109373985
Merged-chr6-3182971-4	chr6	3182832	3183032	+	901.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105587.0	NR_036696	667335.0	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	5.37398354751004	5.15558367773989	6.12998195789661	5.2464708553681	3.77991034370275	4.25325267113555	4.03176165430547	4.50228904870746	-3.00820222585851	8.96920004447145e-11	6.91677887286493e-09
Merged-chr4-132007364-4	chr4	132007263	132007463	+	949.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001128606, exon 2 of 18)	exon (NM_001128606, exon 2 of 18)	41715.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	4.98152123110946	4.63482286783766	4.53593106438635	4.775251193403	5.15413062290766	4.57535717826316	4.71893099879353	4.61905815717121	0.128574008779881	0.728195773703326	0.891829642224214
Merged-chr8-79150703-4	chr8	79150598	79150798	+	939.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	97885.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	4.51707612159878	4.51044269521495	4.64339002089616	4.21196139785845	4.91153236426358	5.21848198247346	4.96535448253961	4.16618693177899	0.843160412537057	0.0400045364341227	0.201806016927315
Merged-chr17-24414596-4	chr17	24414499	24414699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009070)	promoter-TSS (NM_009070)	-47.0	NM_001357626	19826.0	Mm.1951	NM_009070	ENSMUSG00000034681	Rnps1	-	ribonucleic acid binding protein S1	protein-coding	7.55993897026469	7.79888166058334	7.22107942313267	7.31005608775917	7.72343347308237	7.95354711947582	7.63585314430805	7.82311371402818	0.391413702065042	0.0493492275575239	0.229838949703395
Merged-chr2-24048791-3	chr2	24048691	24048891	+	743.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_080462, exon 2 of 7)	exon (NM_080462, exon 2 of 7)	588.0	NM_080462	140483.0	Mm.33120	NM_080462	ENSMUSG00000026986	Hnmt	1500031F01Rik|AI788969	histamine N-methyltransferase	protein-coding	3.40666854885052	3.0723303393173	3.6450219374781	2.91700948915487	3.1722940786414	3.1603469859549	3.16715165510554	3.40512914829752	-0.20137198855594	0.738718325245921	0.896953902505534
Merged-chr17-6779804-2	chr17	6779704	6779904	+	990.0833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	2976.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	3.56623208778252	4.04240790931944	3.56671560019725	3.33999546470053	3.57438319299995	3.43695653797984	3.55272844704826	3.8173149903188	-0.15205977348434	0.773956791974577	0.911669791582544
Merged-chr10-63430093-4	chr10	63429995	63430195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177612)	promoter-TSS (NM_177612)	-3.0	NM_177612	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	5.43907919212171	5.66092089576521	5.25000974480498	5.52711011165306	5.62221085748511	5.52528864004069	5.78891260071576	5.62696830901382	0.270371921127416	0.321463181495306	0.63315055191495
Merged-chr11-117978037-4	chr11	117977962	117978162	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8696.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	4.65269876188332	5.5760507723125	4.60804948926452	3.84203635528591	5.48440573058188	5.67979261044174	4.97956389584035	4.40705187589638	0.696707252837481	0.385042993795427	0.686478690896822
Merged-chr3-146405101-2	chr3	146404998	146405198	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253769, intron 1 of 13)	intron (NM_001253769, intron 1 of 13)	456.0	NM_001355661	99167.0	Mm.200783	NM_138744	ENSMUSG00000036825	Ssx2ip	AU014939|AU042321|Adip	synovial sarcoma, X 2 interacting protein	protein-coding	4.26827831906192	5.02412703780447	5.07860392357067	4.63832339150075	4.65564068231222	4.94897497000745	4.99224113567684	4.88094317697587	0.169904899465053	0.654293656093083	0.855599062078365
Merged-chr19-8518443-4	chr19	8518344	8518544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-72810.0	NM_001164634	19879.0	Mm.285294	NM_031194	ENSMUSG00000063796	Slc22a8	Oat3|Roct	solute carrier family 22 (organic anion transporter), member 8	protein-coding	7.58740721541125	7.45439843470508	7.33518925864922	7.4096794394526	7.43957115255804	7.35781923375437	7.37905488609506	7.44909281813401	-0.0517358444140028	0.765301117482447	0.908161919263831
Merged-chr5-125141219-4	chr5	125141065	125141265	+	909.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 1 of 46)	intron (NM_011424, intron 1 of 46)	38049.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	3.54125526331814	3.46260368111587	3.42548040830218	3.53628719985264	3.49287185495231	3.76675646590259	3.90480895013311	3.48306416436975	0.553398083433767	0.261538716038702	0.573476890516299
Merged-chr2-11475208-3	chr2	11475118	11475318	+	846.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177752, intron 13 of 13)	intron (NM_001177752, intron 13 of 13)	26872.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	3.36858143773346	3.35116990302458	3.4799625542291	3.44314318095438	3.29349663202004	3.42275463037832	3.29807753456215	3.6740962601654	0.0499135208681788	0.922885610815143	0.971428538606896
Merged-chr9-106281110-5	chr9	106281042	106281242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027354)	promoter-TSS (NM_027354)	81.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	5.76334423661463	5.81642594577314	6.02483018001467	5.36451628763116	6.33922685283242	6.46766020680913	6.05614724388911	6.21807915112639	0.844905225256073	0.00165965987112249	0.020224778285675
Merged-chr5-24530243-4	chr5	24530132	24530332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3384.0	NM_015739	231044.0	Mm.246596	NM_015739	ENSMUSG00000067724	Gbx1	Gbx-1	gastrulation brain homeobox 1	protein-coding	5.97993660539903	6.38574088768066	5.63682653886967	5.84409243364742	6.15771129350665	6.6649127635476	6.44174425275177	6.38932793908095	0.651010778149451	0.0160649366124494	0.109950588763225
Merged-chr9-95571144-3	chr9	95571031	95571231	+	718.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	11314.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	3.78022170648123	4.03326254335936	3.78074258764992	3.84274793640058	4.01628200934209	3.72996681557696	3.8163969681364	3.72523083691322	-0.0788249550191757	0.861722451349725	0.947809474991843
Merged-chr11-104001180-4	chr11	104001095	104001295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34324.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	7.37365698298825	7.80032087124796	7.57315039556732	7.31245032803939	7.64049334198179	7.46785800174624	7.57866765682157	7.25201337223865	-0.0360653132010452	0.857712628101157	0.946392149155271
Merged-chr2-152197444-4	chr2	152197338	152197538	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29402.0	NM_007788	12995.0	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	CK2|Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	4.51456536444263	4.78859661280752	3.86302918708589	4.78483728604478	4.55713399522639	4.42949204320512	4.1862929204438	4.25073939544393	-0.40623958289924	0.368782558198196	0.673221351337215
Merged-chr19-5922634-2	chr19	5922534	5922734	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026772, intron 1 of 1)	MIR|SINE|MIR	2182.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	3.0407770457277	2.92278484243672	2.73612182475272	2.58494181351811	2.74342708718048	2.97622362280888	2.85641043429299	2.86537896734173	0.160049771473192	0.802632028575165	0.923936032101707
Merged-chr9-35211084-4	chr9	35210982	35211182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026130)	promoter-TSS (NM_026130)	-27.0	NM_001291448	235169.0	Mm.138512	NM_172291	ENSMUSG00000039048	Foxred1	BC024806|TEG-23|Tex23	FAD-dependent oxidoreductase domain containing 1	protein-coding	8.99517260236432	9.32320924671654	8.96017918086944	8.92094168685759	9.04219542692188	9.2578794842627	9.19374689930716	8.98738466368016	0.0794352821598697	0.625406167587158	0.839904635812273
Merged-chr9-15035013-3	chr9	15034916	15035116	+	837.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019482, intron 1 of 4)	intron (NM_019482, intron 1 of 4)	10462.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	3.50782250512774	3.54057774324553	3.34677537971784	3.35265406599204	3.39528173293284	3.27212489358638	3.2163839096657	3.45489195998354	-0.33762247150441	0.516969954560603	0.778599784085593
Merged-chr15-10921101-3	chr15	10920990	10921190	+	927.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31242.0	NM_030888	81799.0	Mm.280158	NM_030888	ENSMUSG00000058914	C1qtnf3	2310005P21Rik|CORS-26|CORS26|CTRP3|Corcs|Cors	C1q and tumor necrosis factor related protein 3	protein-coding	3.7184757022484	3.66480702152873	3.61407660428131	3.84221398730113	3.53027481266088	3.48859703408721	3.84418996994359	3.71687183752649	-0.220324095047422	0.64623221211474	0.851295585787822
Merged-chr5-137657225-4	chr5	137657163	137657363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178162, intron 6 of 11)	RSINE1|SINE|B4	-11549.0	NM_010571	16369.0	Mm.24486	NM_010571	ENSMUSG00000047182	Irs3	AA408304	insulin receptor substrate 3	protein-coding	6.38375467132756	6.42173090219488	5.91236728255171	6.20181486504726	6.29451166522902	6.50743539425368	6.28206616925361	6.07132853662035	0.0769024027062415	0.752149706706259	0.902363969099289
Merged-chr2-5706799-4	chr2	5706703	5706903	+	834.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	7959.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	4.4481412004322	4.41749860916552	3.99562684036636	4.54566311060206	4.19258239034975	4.17286976659994	4.08289636344246	4.14663253735541	-0.566524398197341	0.168231002493303	0.460191392541484
Merged-chr1-85995039-3	chr1	85994925	85995125	+	736.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26917.0	NM_001122732	70060.0	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	3.67042976750333	3.58589373714674	3.49187657789752	3.46310853277786	3.94884225654459	3.84610503972087	3.99405724184153	4.09272825420754	1.26287119544447	0.00485026893363052	0.0464715698515126
Merged-chr1-135375216-4	chr1	135375158	135375358	+	835.6357419999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175259)	promoter-TSS (NM_175259)	-195.0	NM_175259	77552.0	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	4.1791733888895	4.11910697958048	4.45365941383273	3.99767405852756	3.99811173252635	3.89274731302049	3.92405491959682	4.0867070773945	-0.549515299402613	0.20206607922426	0.504566133212499
Merged-chr1-165700710-3	chr1	165700587	165700787	+	726.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	7407.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	3.42168186887985	3.50580068702068	3.83670835603659	3.33876544919609	3.60490817035916	3.81590723416913	3.57900264679329	3.47994629606544	0.303727673220484	0.54792766410447	0.797125170218736
Merged-chr1-92774975-3	chr1	92774889	92775089	+	930.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56656.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	3.91978753369811	3.75789691185701	3.62677887030207	3.82583561279515	3.57094160507741	3.7439060384891	3.49937377990824	3.6248189654893	-0.555756891718814	0.239416832000067	0.549830634475472
Merged-chr2-66124272-7	chr2	66124135	66124335	+	947.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015736, intron 1 of 10)	CpG	558.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	4.37866961382083	4.23738846937961	4.9846316592432	4.66798292250826	4.12970995297721	4.51087182006332	3.99960380015238	4.92344841555283	-0.351248630698654	0.447690475694792	0.733195903766039
Merged-chr11-120673146-7	chr11	120673183	120673383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026877, intron 1 of 15)	CpG	310.0	NM_026877	68938.0	Mm.294020	NM_026877	ENSMUSG00000025142	Aspscr1	1190006K01Rik|ASPC|ASPCR1|ASPL|ASPS|RCC17|TUG	alveolar soft part sarcoma chromosome region, candidate 1 (human)	protein-coding	6.99077470266182	6.88613874798976	7.01696831853756	6.79648641341375	7.17913050507551	7.31114462260478	6.91840935704175	6.99960104397126	0.270521036532222	0.172645739087463	0.466172528668856
Merged-chr4-58568478-4	chr4	58568384	58568584	+	973.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14993.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	5.43846241204617	4.90139013693133	5.49271699997769	5.37952554482596	5.0624258675089	4.91680541331923	5.51559809090699	5.72546490605126	0.0395804614010261	0.909509699249933	0.966320459266825
Merged-chr9-96530829-4	chr9	96530732	96530932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52157.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	7.01052777125633	7.26230341351999	7.34071424943083	7.36681997603989	7.61528812159196	7.42150861713416	7.59668961671303	7.65317884484085	0.422210529225612	0.0214743714012138	0.134198795607287
Merged-chr4-88701771-3	chr4	88701680	88701880	+	972.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10512.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	4.84819078974858	4.19270669665455	4.68770139155281	4.98077447756606	4.19666985983945	4.09394432481156	3.95209180173308	4.23489509602244	-1.3997042889919	0.00115423237317904	0.0151053596530208
Merged-chr17-50024741-4	chr17	50024634	50024834	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 7 of 9)	intron (NM_181397, intron 7 of 9)	165763.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	4.57628926490321	4.70537860912758	4.00717791524369	4.083448021327	4.54948379747589	4.33846786448271	4.04430882548155	3.8905601962336	-0.325155528361532	0.489390475974809	0.76169179992188
Merged-chr17-50872793-4	chr17	50872681	50872881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 14 of 21)	intron (NM_028162, intron 14 of 21)	174100.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	5.70367617681551	5.58725225149609	5.52228331019129	5.93724830900958	5.43755550258873	5.6691163379113	5.72305485696448	5.30790008291666	-0.296882400307391	0.296519527156593	0.608507761092495
Merged-chr2-34780667-4	chr2	34780555	34780755	+	977.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145522, exon 7 of 8)	exon (NM_145522, exon 7 of 8)	8565.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	5.22820524867822	5.84466429856942	4.31354583488451	3.46717119421075	5.60817752880174	6.0136213089792	4.35106958902514	4.84315134737559	0.539388597889245	0.604597713113288	0.828509474255204
Merged-chr3-20004718-4	chr3	20004624	20004824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 14 of 16)	intron (NM_080634, intron 14 of 16)	30586.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	7.07960327561951	6.990781885322	7.34001068913002	7.63556460241088	6.94180729961819	6.71344234497423	6.91951547363717	7.24393064578873	-0.450350378264187	0.0528299182696779	0.239743752152847
Merged-chr18-61177129-4	chr18	61177044	61177244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178277)	promoter-TSS (NM_178277)	-94.0	NM_134134	106894.0	Mm.22574	NM_134134	ENSMUSG00000024622	Hmgxb3	2510002C16Rik|A630042L21Rik|AI413166|mKIAA0194	HMG box domain containing 3	protein-coding	7.00285987182821	6.98168170291775	6.59726027545791	6.78215624392408	6.71248114218682	6.50815816846751	6.39441596562562	6.57643891029058	-0.415559789779105	0.055927260096694	0.247535352597562
Merged-chr4-105556949-4	chr4	105556846	105557046	+	683.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	399599.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.73094392563376	3.54642072024473	3.83292827706386	3.73368184082868	3.80919946230686	3.90272372540695	3.76758515231548	3.83065784830091	0.332706415459467	0.459119113282727	0.74170765693035
Merged-chr19-11823165-1	chr19	11823065	11823265	+	643.0	f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-3762.0	NR_153434	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	2.61531099980206	2.48138174101429	2.61554674532282	2.65940270333874	3.24060681162182	3.54999289713465	3.01345450998751	2.90088055556902	2.64950956593912	0.00024071701967362	0.00423479899736743
Merged-chr8-80325412-4	chr8	80325344	80325544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168601.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	7.08689644875552	6.3501749006343	7.09892687704458	6.94001456758709	6.1104575660628	6.61153174955973	6.55431058726119	6.58333940414078	-0.614750658042849	0.0169105676586712	0.114190047943891
Merged-chr8-39674369-2	chr8	39674254	39674454	+	781.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-31676.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	3.16848594963962	2.94491547435126	3.41809573746229	3.59835731572313	2.55069263023519	2.89867291520822	2.70661288292788	2.71253624407064	-3.02996193485153	0.000116795763260461	0.00230927934253231
Merged-chr1-184033629-4	chr1	184033525	184033725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022019)	promoter-TSS (NM_022019)	373.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	5.87237393765833	6.19888078435951	6.22058945704746	6.2437499855366	6.14692465600523	6.09967921570017	6.00631811748078	6.44102590544478	0.0494491759672311	0.83951231366863	0.938943388818425
Merged-chr14-34296547-4	chr14	34296449	34296649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153399, intron 2 of 11)	intron (NR_153399, intron 2 of 11)	13968.0	NR_153399	75698.0	Mm.45406	NM_029389	ENSMUSG00000041471	Fam35a	3110001K24Rik	family with sequence similarity 35, member A	protein-coding	5.37068831577009	4.93493188210871	5.17026851767775	5.45734039780346	5.21705767064093	4.67416002356955	5.01452058115565	5.03546840210413	-0.465987434508047	0.166200093968096	0.457337785153094
Merged-chr2-45191956-4	chr2	45191852	45192052	+	793.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74510.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	3.67830948778281	4.0045367605906	3.80689304665527	3.79421274777831	4.44923301979517	4.0508307672979	4.68100317660492	4.73206721810854	1.69030203733226	0.000102586131222348	0.00207207404317223
Merged-chr13-101740179-4	chr13	101740072	101740272	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	28045.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.6578948189405	4.82440041732082	4.61879405239039	4.43150555535582	4.60844746024589	4.79232431096709	4.55673409927721	4.87125165437577	0.171550297306391	0.629102263920148	0.841961304970898
Merged-chr2-103009445-3	chr2	103009341	103009541	+	964.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER63C|DNA|hAT-Blackjack	64072.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	4.1603374970408	3.69726107727391	4.27532170910874	4.2144166363242	3.75841867392719	3.54479431999295	3.60928217963994	3.62063886918778	-1.35888073198635	0.00567359124143728	0.0521892673784265
Merged-chr7-127362610-2	chr7	127362510	127362710	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13440.0	NM_175560	269997.0	Mm.221270	NM_175560	ENSMUSG00000054381	Zfp747	6430604K15Rik	zinc finger protein 747	protein-coding	3.24404025668324	3.02366384876329	3.06352844261431	2.87225029066334	3.41015072444119	3.35804593947781	3.23164429731836	3.18521576234688	0.998915372885386	0.0727182958801018	0.290114135287882
Merged-chr16-64865543-4	chr16	64865459	64865659	+	839.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	13558.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	4.04945745343428	4.3609086102563	4.73114107161309	3.98195465130664	4.14661359874338	4.22825589642642	4.18127195298647	4.37282747090816	-0.175212951847124	0.688259867179441	0.87268021244394
Merged-chr7-110844400-4	chr7	110844305	110844505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025999)	promoter-TSS (NM_025999)	-24.0	NM_025999	67150.0	Mm.96867	NM_025999	ENSMUSG00000030788	Rnf141	2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230	ring finger protein 141	protein-coding	6.21468419209221	6.47281295896929	5.87670524077175	6.04786760964963	6.50760517497884	6.64166058589595	6.26051056028864	6.39550243334363	0.433394683357296	0.0768963839172958	0.299715677956916
Merged-chr4-124696036-4	chr4	124695970	124696170	+	958.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2516.0	NM_026031	67205.0	Mm.259121	NM_026031	ENSMUSG00000028907	Utp11	2700082D03Rik|CGI-94|Cgi94|Utp11l	UTP11 small subunit processome component	protein-coding	4.37478530297055	4.33470134515264	4.49631468863746	4.02122419676874	4.18451434378531	4.271422817145	4.31296104727857	4.60341147085959	0.110991863233026	0.78500286231212	0.916370950988345
Merged-chr6-70812079-4	chr6	70811982	70812182	+	801.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19907.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	4.17322792129297	4.30198419169268	4.17385153442915	4.19169469625145	4.32468885803927	4.34567431080789	4.28692628443791	3.91519443930207	0.0545726520252055	0.892152730600877	0.959609735423941
Merged-chr6-101555409-4	chr6	101555316	101555516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177519.0	NM_018884	55983.0	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	6.89960165459517	6.88561204414878	6.96442768294903	6.92772225363862	6.47861861317854	7.08987273290721	6.72856496756897	6.69852594071551	-0.230599294324678	0.284051176747798	0.596035490823689
Merged-chr6-113078164-3	chr6	113078053	113078253	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027008)	promoter-TSS (NR_027008)	514.0	NM_028385	72895.0	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	3.3766038213324	3.34984383659539	3.37705938323633	3.15313699474134	3.42780646184369	3.2439067124139	3.2489762981049	3.62664087647871	0.319971930522069	0.546325762588119	0.796350145922542
Merged-chr18-4009312-4	chr18	4009184	4009384	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-156548.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	5.56151894548152	5.58811651104591	5.94831970767694	6.10607989271639	5.3258920276506	5.30422701426935	5.33466916795644	4.96148258624397	-1.02321882254304	0.00078622717670694	0.0110855711007603
Merged-chr1-172310224-4	chr1	172310142	172310342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2125.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	5.832331855797	6.07275589914122	5.65700967410055	5.0303470779799	5.86068613025448	6.2992384062559	5.75581817643805	5.91986557379631	0.452813480562435	0.167346608076134	0.458940920611074
Merged-chr4-137836043-5	chr4	137835868	137836068	+	913.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26269.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	4.02585380069446	4.01474292806482	4.02642158321518	3.89082961164356	4.62481318745411	4.66201228802152	4.834329058284	4.40710194429522	1.57783652529262	3.63613430637943e-05	0.000856828099378396
Merged-chr4-41756162-4	chr4	41756015	41756215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302511)	promoter-TSS (NM_001302511)	-95.0	NM_001302511	14430.0	Mm.439669	NM_016658	ENSMUSG00000036073	Galt	AW553376	galactose-1-phosphate uridyl transferase	protein-coding	5.19514402100569	5.389267407456	5.22827434433411	5.08418460673637	5.25276972943204	5.33843246792975	5.35141369733867	5.50846316118851	0.25801867639888	0.372990659571061	0.676706100878765
Merged-chr2-27690493-2	chr2	27690393	27690593	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	(TG)n|Simple_repeat|Simple_repeat	13292.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	3.17249335545699	2.90065044408939	2.80009698741739	2.7334712775305	3.31512572582868	3.04593536326828	2.98892857235113	3.11601363364807	0.931206837727554	0.123930541531105	0.39066660831012
Merged-chr19-56422985-6	chr19	56422826	56423026	+	914.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007611, intron 2 of 6)	intron (NM_007611, intron 2 of 6)	25797.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	3.40441184283931	3.33114569087228	3.2890406167228	3.56695338595018	3.30653058180316	3.13125886118402	3.33582100100747	3.74042884451106	-0.0407649228121415	0.94121264823847	0.97880889895487
Merged-chr2-168540033-4	chr2	168539941	168540141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	L2|LINE|L2	50324.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	6.24878015548081	6.55118975257857	6.21236917271106	6.54443621532106	5.77589113339524	5.60487342851047	6.06134312882156	6.04565805364506	-0.812039685346328	0.00129376372953058	0.0165640788195665
Merged-chr12-110888311-4	chr12	110888209	110888409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081057)	promoter-TSS (NM_001081057)	836.0	NM_027223	67236.0	Mm.287157	NM_026048	ENSMUSG00000021276	Cinp	1810047K05Rik|2810452K22Rik	cyclin-dependent kinase 2 interacting protein	protein-coding	6.11587173676849	6.00256009578187	5.96920500929782	6.07170362486103	5.98120778909834	6.3109799387181	5.79771306990659	6.00892716367652	-0.0162029869404606	0.947178513316112	0.981099848647044
Merged-chr6-49236527-3	chr6	49236427	49236627	+	900.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-21573.0	NM_023670	140488.0	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	3.71771490163114	4.13385058284444	3.78044373553993	3.78271765029271	4.13315563401803	4.13070826885775	4.6489370085518	4.50732629451533	1.29412107979022	0.00337338587099452	0.0350173884951902
Merged-chr16-11176401-4	chr16	11176285	11176485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145931)	promoter-TSS (NM_145931)	8.0	NR_027502	106205.0	Mm.226860	NM_145931	ENSMUSG00000037965	Zc3h7a	A430104C18Rik|AI447294|AW556219|HSPC055|Zc3h7|Zc3hdc7	zinc finger CCCH type containing 7 A	protein-coding	8.12745628919887	8.24024458865392	8.1601543655135	8.12228408532406	8.30670479306079	8.44468168311717	8.44139234261019	8.11703659433666	0.217458797297717	0.173346827193138	0.467381192003767
Merged-chr14-27045242-4	chr14	27045127	27045327	+	843.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134437, intron 1 of 12)	intron (NM_134437, intron 1 of 12)	6226.0	NM_134437	171463.0	Mm.206726	NM_027265	ENSMUSG00000040717	Il17rd	2810004A10Rik|AI428510|Sef|Sef-S	interleukin 17 receptor D	protein-coding	4.00995245821033	4.02478316176817	4.10744883308478	4.58405033165557	4.13549190060841	4.18364256516321	4.0427216217896	3.79012196833654	-0.451730465649213	0.322582828100665	0.634045774326241
Merged-chr16-92028283-4	chr16	92028199	92028399	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30023.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	4.81646600644503	4.69780118891779	5.04823481688005	5.28518177670139	4.60626130182021	4.57510528310731	3.97478395751231	5.01422264713626	-0.817193273103946	0.0579963269997629	0.252871090935138
Merged-chr10-19691470-1	chr10	19691370	19691570	+	787.0	f0_balb.idr	Intergenic	Intergenic	-21117.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	3.02015592663758	3.08359603231222	3.30289483026036	3.22259148396662	2.94864819849339	3.12868132342645	3.07148682632297	3.13971260108328	-0.386505635444633	0.497551852495605	0.767090702736496
Merged-chr2-49743788-4	chr2	49743691	49743891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 19 of 25)	MTD|LTR|ERVL-MaLR	-43895.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	6.32840773433661	6.02915811036188	6.3295277550153	6.69594161122506	6.54720701436363	6.16952913201466	6.40358120231289	6.76056517962217	0.158616606191958	0.542384941330325	0.793816675281769
Merged-chr7-100430142-4	chr7	100430031	100430231	+	889.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001017985, exon 21 of 33)	exon (NM_001017985, exon 21 of 33)	-42860.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	4.77117830237113	4.73150022544653	5.30759270188988	5.2683628482609	4.46010495816339	4.82674614582024	4.93029390384058	4.7290459606365	-0.639253291599642	0.0818627521290069	0.310503508141883
Merged-chr3-89238512-4	chr3	89238411	89238611	+	930.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039466, intron 7 of 8)	intron (NM_001039466, intron 7 of 8)	6502.0	NR_121683	360213.0	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	4.24072701608368	4.26376739033719	3.6163374480696	3.62001317618338	4.41637584145578	4.03703895386728	3.9488680562598	4.1966620962539	0.516840169615343	0.289228826917885	0.601252115531934
Merged-chr10-68275059-4	chr10	68274927	68275127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	3699.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	6.07465458075584	6.63703408080419	6.38083514096726	6.38032921865003	6.00476502988078	6.11708529347131	6.02304596887624	5.98209142786736	-0.545876034328271	0.0230653071754219	0.140622312585812
Merged-chr1-157553229-4	chr1	157553140	157553340	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159986, intron 14 of 25)	intron (NM_001159986, intron 14 of 25)	27070.0	NM_001159986	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	5.15750163517326	5.57611081520785	5.19231360256756	5.28843326198057	5.53070764986399	5.1923864702904	5.72222009691935	5.18877256449295	0.209655909265571	0.497187756739847	0.766982020988234
Merged-chr18-56569308-2	chr18	56569208	56569408	+	764.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162989, intron 1 of 4)	B4A|SINE|B4	-3563.0	NM_019996	56698.0	Mm.214569	NM_019996	ENSMUSG00000008301	Phax	2810055C14Rik|4933427L19Rik|AU018701|AU018854|D18Ertd65e|Rnuxa|p55	phosphorylated adaptor for RNA export	protein-coding	3.13600837811129	3.15748516310746	3.06683786174025	3.2098477619182	3.88318852644215	3.55489533434173	3.42444615632222	3.43655456835228	1.54424263346792	0.0044335447358784	0.0434556982587564
Merged-chr18-34550122-3	chr18	34550031	34550231	+	993.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7803.0	NM_009290	20890.0	Mm.558	NM_009290	ENSMUSG00000012282	Wnt8a	Stra11|Wnt-8A|Wnt-8D|Wnt8d	wingless-type MMTV integration site family, member 8A	protein-coding	3.51755215625703	3.50195833970874	3.24358736046416	3.29265843936707	4.09361871679458	3.75900892821362	4.12918043441845	4.18460792532923	2.00848838268741	2.62765349835975e-05	0.000647848106545717
Merged-chr16-58408965-3	chr16	58408882	58409082	+	922.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356484, intron 1 of 15)	CpG	447.0	NM_028523	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	4.61379697313371	4.30541647110647	4.9611302159694	4.53204956916696	4.08917858644017	4.26293899471644	4.21825898787954	4.18440362517614	-1.02712634954116	0.0112694239093929	0.0859238993570465
Merged-chr13-75791015-4	chr13	75790922	75791122	+	980.1416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48863.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	5.04128356433543	4.5873135957138	4.97624731748015	4.84524308988477	4.99584814884073	5.04429070585525	5.07947907690187	4.79166034817488	0.229784251902344	0.484822139067703	0.758880279356098
Merged-chr12-72520756-4	chr12	72520642	72520842	+	743.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15615.0	NM_026327	67708.0	Mm.11233	NM_026327	ENSMUSG00000034501	Pcnx4	1810048J11Rik|4932413O10|AU017192|Pcnxl4	pecanex homolog 4	protein-coding	3.90727392469403	3.89506323863978	4.31022779572226	4.09889443745309	3.91701948665244	4.02963447689728	3.99189314802687	4.10003548938276	-0.151969995978573	0.722310638060557	0.889145957666795
Merged-chr5-4530476-4	chr5	4530341	4530541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	227775.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	7.13040691197616	7.28083867257998	7.20014412947523	7.11511044591938	7.0246214606848	7.49332735879898	7.29031447232207	7.10296059337729	0.0702972441828042	0.720288807568831	0.888243884856927
Merged-chr1-131019558-4	chr1	131019472	131019672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010548)	promoter-TSS (NM_010548)	-273.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	6.07885643569558	6.77575294164599	6.24996360899012	5.68727769952932	6.5463323858592	6.91390382686813	6.78234190643982	6.18437179946046	0.557331847392313	0.0689645902687936	0.280648937781857
Merged-chr10-21889616-4	chr10	21889558	21889758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 1 of 13)	intron (NM_001161845, intron 1 of 13)	7474.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	6.46086257417623	7.06024203710609	6.67852120613339	6.80590733435488	6.59696695081777	6.90000734030973	6.85438582019188	6.67376448488187	-0.0285171501684771	0.89880204767987	0.962303043708153
Merged-chr19-3936618-4	chr19	3936512	3936712	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019449, intron 3 of 10)	intron (NM_019449, intron 3 of 10)	1426.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	5.73840777507771	5.42430968649926	4.83395491267849	5.27973852541135	5.77632223649499	5.72002044191091	5.19628336760007	5.40541940368464	0.339323496968846	0.313287908028668	0.625166179930743
Merged-chr18-24654471-4	chr18	24654312	24654512	+	894.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026779, intron 1 of 14)	intron (NM_026779, intron 1 of 14)	721.0	NM_026779	68591.0	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	3.33461488637707	3.56565617945586	4.19427862647563	3.42319969241002	3.83841621291015	3.58849452548669	4.01871002774601	3.90357169630876	0.51290512710376	0.341275416194313	0.650378657276975
Merged-chr6-39415986-4	chr6	39415864	39416064	+	917.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018810, intron 1 of 7)	B3|SINE|B2	3812.0	NM_001311109	54484.0	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	4.47029348425076	4.52303679158799	4.08316968994216	4.35298892465435	4.823524939609	4.46766552526958	4.56937666866168	4.58796629153763	0.581942704292395	0.121395217940335	0.385893577343147
Merged-chr2-130629948-4	chr2	130629824	130630024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001255993, exon 1 of 7)	5' UTR (NM_001255993, exon 1 of 7)	103.0	NM_198176	380601.0	Mm.27090	NM_198176	ENSMUSG00000079043	Fastkd5	C78212|mKIAA1792	FAST kinase domains 5	protein-coding	5.14096760946613	5.17951996047634	5.26605276285746	5.2144657764549	5.19011748310084	5.10624224559137	5.17992585706922	5.17052414929616	-0.0703582462798357	0.808288694749444	0.926004687049714
Merged-chr10-89462024-4	chr10	89461905	89462105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009108, intron 7 of 8)	intron (NM_009108, intron 7 of 8)	-18038.0	NM_001033331	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	6.14455354624117	6.15801546034277	6.16564174653596	6.19647901091464	6.0446327736582	6.32059153750875	6.19198115764416	6.07935438774516	-0.0192426618813466	0.93246579696807	0.975664181402534
Merged-chr5-115349057-4	chr5	115348959	115349159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007748)	promoter-TSS (NM_007748)	-104.0	NM_007748	12861.0	Mm.43415	NM_007748	ENSMUSG00000041697	Cox6a1	VIaL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding	7.04291384907104	7.2358787254358	6.64398928438854	6.67137810689962	7.37110648742559	7.24520735144777	7.11379895607243	7.18892141548324	0.43967203484943	0.0448860484782508	0.216488958167327
Merged-chr17-47767844-3	chr17	47767816	47768016	+	782.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-17828.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	3.13516902600585	3.02062247422121	3.2946564097849	2.74751048938729	3.23025975507976	3.06393461541537	2.80966804698782	2.95264308864036	-0.121949255454442	0.84747813167753	0.942302928724103
Merged-chr9-83834572-4	chr9	83834450	83834650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009445)	promoter-TSS (NM_009445)	-139.0	NM_009445	22137.0	Mm.1904	NM_009445	ENSMUSG00000038379	Ttk	AL022661|Esk1|Mps1|PYT|esk	Ttk protein kinase	protein-coding	7.68924637255121	7.94850782838746	7.93362276751595	7.67534075181073	7.80622648454734	7.85117173435713	8.03835446950883	7.4559564795268	-0.0122782509218655	0.949083945537469	0.981683593064559
Merged-chr4-48492716-3	chr4	48492605	48492805	+	760.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19242.0	NM_001355740	269536.0	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	3.1123401317411	3.01563936973438	3.34967420021026	3.14791607321981	3.10190970260331	3.22503277484626	3.28127464632388	3.67872777809681	0.649098333252505	0.253228939776784	0.564547937715163
Merged-chr3-67557372-4	chr3	67557254	67557454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25414.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	8.47852932832042	8.82154639604067	8.53044246726308	8.78744938068727	8.85432927382841	9.01081689976889	8.76138156646589	8.61110027521676	0.186030290773554	0.27129200946723	0.583057880427185
Merged-chr16-44793875-3	chr16	44793770	44793970	+	721.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 6 of 6)	intron (NM_021325, intron 6 of 6)	-26858.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	3.55098996901763	3.63411107930767	3.70249251507357	4.12488032854521	3.32401305467305	3.22382886852518	3.17482836866501	3.37873278730756	-1.75635653117506	0.00181495268501382	0.0216754306216854
Merged-chr2-120632189-4	chr2	120632098	120632298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22603.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	7.48031862737289	7.48799223810173	7.6782112440251	7.55968277252404	7.3099732766311	7.28450629271586	7.42602349814606	7.1625960841886	-0.338831402302682	0.0551238693057689	0.24542827880874
Merged-chr7-55794141-4	chr7	55794026	55794226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360874)	promoter-TSS (NM_001360874)	1.0	NM_001360873	233276.0	Mm.284306	NM_146190	ENSMUSG00000033790	Tubgcp5	B130010C12Rik|GCP5|mKIAA1899	tubulin, gamma complex associated protein 5	protein-coding	7.630347390651	7.38133146478818	7.07442763889617	7.66366636833192	7.16321986958149	7.18805971128341	7.22417387596984	7.11858113412705	-0.396299105778807	0.0515019561554113	0.235746478275629
Merged-chr6-43645352-3	chr6	43645248	43645448	+	969.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 2 of 8)	intron (NM_013861, intron 2 of 8)	20930.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	4.35773168060619	4.13015790521877	4.15482624090053	4.43410891331477	3.53476409505305	4.18866727667315	3.7283567352935	3.79934234436763	-1.25343755701745	0.00744142055720947	0.06366260502904
Merged-chr2-73312674-4	chr2	73312598	73312798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029022)	promoter-TSS (NM_029022)	46.0	NM_001355711	74616.0	Mm.247457	NM_029022	ENSMUSG00000008226	Scrn3	4833415E20Rik|AI427019|AV002033|Ses3	secernin 3	protein-coding	7.84448879925308	8.29874518397422	8.1230558620153	7.81744944081133	8.28428780140904	8.17659395684761	8.0338443346549	8.06044483942723	0.144806721820558	0.431939336358987	0.722036567335526
Merged-chr1-171231098-4	chr1	171230974	171231174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010185, intron 2 of 4)	intron (NM_010185, intron 2 of 4)	3275.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	5.24862768432028	5.22603974011974	5.3424642150762	4.89042052680225	5.46415796754207	6.0019526068273	5.12412140782709	5.42524679155076	0.649905133585704	0.0490563635076258	0.228969370367823
Merged-chr3-10439609-4	chr3	10439501	10439701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127191, intron 1 of 6)	CpG	529.0	NM_029068	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	5.39195965315638	5.00887580190117	4.90169373466262	5.09941855507279	5.38143782385267	5.04096902408694	5.39240544594273	5.44218958359884	0.399670791996264	0.195317047096038	0.496106010894639
Merged-chr10-60344323-4	chr10	60344219	60344419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 37 of 68)	intron (NM_001252635, intron 37 of 68)	-2532.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	5.59999372568912	5.66316846561398	5.62560748924404	5.51141321417941	5.24772966126495	5.19037965356889	5.38649121163696	5.22371176106033	-0.58538295770594	0.0344743145017107	0.18365745317845
Merged-chr16-76409535-3	chr16	76409441	76409641	+	807.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-35714.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	3.83351610580682	3.6424828640916	4.03099266094369	4.10672110565877	3.67613848877989	4.32790697542211	3.81848997594701	3.93392589001458	0.0881517930069814	0.854671552690472	0.94527177305373
Merged-chr19-5625505-4	chr19	5625395	5625595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-11995.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	6.08072691623569	6.35990657382131	6.12229164458925	5.98537894068459	5.97559658816801	6.17226365779951	5.72591522410548	5.94764158883472	-0.274232485404096	0.273383240340233	0.584955981006957
Merged-chr4-56070885-4	chr4	56070782	56070982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	-538407.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	6.27653807035325	5.72138050887485	6.60600538521693	6.72407235024258	5.78957360620083	5.93244309465745	6.69511925604036	6.3281706074133	-0.238129586298834	0.465077210678053	0.745723070156486
Merged-chr16-43889762-4	chr16	43889684	43889884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356328)	promoter-TSS (NM_001356328)	-108.0	NM_001356328	106248.0	Mm.275354	NM_029128	ENSMUSG00000022704	Qtrt2	3110012M05Rik|4930470H18Rik|AI648807|Qrtr2|Qtrtd1	queuine tRNA-ribosyltransferase accessory subunit 2	protein-coding	8.6293678764904	8.84448245275231	8.77726847198642	8.91593242039475	8.65416509323745	8.6422951738092	8.72941899595797	8.67452898257621	-0.157446308674879	0.286012713317482	0.597615363323773
Merged-chr5-107949833-4	chr5	107949734	107949934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	MTE2a|LTR|ERVL-MaLR	37243.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	6.83348051248945	6.53820512863518	6.94943381893426	6.87425104429394	6.77317765161024	6.56873373556939	6.65933821435504	6.44184627673734	-0.263873128400735	0.221394568849247	0.529463056908312
Merged-chr11-48869553-2	chr11	48869453	48869653	+	893.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008326, intron 1 of 2)	intron (NM_008326, intron 1 of 2)	1867.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	3.03893179613565	2.81891254116523	2.86249577359459	2.4890192816619	2.87896506606797	3.1526747318665	2.57658189877197	2.86101932042551	0.301255496194469	0.661102625723096	0.859233242450522
Merged-chr5-75151328-3	chr5	75151235	75151435	+	843.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347718)	promoter-TSS (NM_001347718)	-916.0	NR_144636	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	3.62939219687158	3.61937270960658	3.57762484912093	3.32730917684159	3.47587650763526	3.74797682173418	3.56316861439944	3.46442573837554	0.1013460763345	0.838690020438155	0.938825812898351
Merged-chr1-125441866-4	chr1	125441763	125441963	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6136.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	5.82112881600221	5.78256463221819	5.51096510027537	5.98474373966081	5.51841464978135	5.28443564314055	5.79245041484124	6.06701891374506	-0.164115851061927	0.583108500037974	0.816904287158464
Merged-chr12-84389098-4	chr12	84389017	84389217	+	961.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001026214, intron 6 of 15)	intron (NM_001026214, intron 6 of 15)	11817.0	NM_001286058	12499.0	Mm.10211	NM_007647	ENSMUSG00000021236	Entpd5	AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase	ectonucleoside triphosphate diphosphohydrolase 5	protein-coding	5.13430930416547	4.97659522324269	5.13519719590304	4.6904904828657	4.81621352884503	4.90039278350619	4.53199911622234	4.72148112870884	-0.467741028779372	0.182106582811915	0.478767986184875
Merged-chr5-135912013-4	chr5	135911909	135912109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018871, intron 1 of 1)	intron (NM_018871, intron 1 of 1)	22632.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	6.8285681320547	6.73262634257848	6.76039790334958	6.68828936608877	6.68287984301711	7.01893298866296	6.40394980611557	6.74125191079015	-0.0331749136318974	0.87842013206642	0.954545606389742
Merged-chr6-143099557-2	chr6	143099438	143099638	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001362118, intron 2 of 25)	CpG	614.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	5.21315295319731	4.91904240325252	5.24340200707088	5.24352465874611	5.14364842181135	5.08940275265091	4.73208344676926	5.01850505942029	-0.293437111256877	0.358274446669969	0.664320653179664
Merged-chr19-44267066-4	chr19	44266956	44267156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-26620.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	5.26590831592501	5.3014595527309	5.40997465547273	5.25933597566676	5.2466610188132	5.28072503312606	5.27049988898625	4.91741255728646	-0.213827673763537	0.469046070181573	0.748076114999735
Merged-chr4-63401809-4	chr4	63401707	63401907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 1 of 21)	intron (NM_001045514, intron 1 of 21)	1638.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	7.15306461038548	7.23638861054794	7.47969238414419	7.37618796799458	7.10087128226048	7.31970550675614	7.16386270578383	7.12585864938858	-0.195302043908964	0.295341129240609	0.607364100260525
Merged-chr3-154269986-4	chr3	154269884	154270084	+	885.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081263, exon 22 of 22)	exon (NM_001081263, exon 22 of 22)	60576.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	4.33941118036547	4.54088257772906	4.54638508528914	4.5235886578766	4.18151259910629	4.32488479086346	4.48678113374661	4.33739632807736	-0.383364133121518	0.307424755882016	0.619681317935151
Merged-chr5-93206005-4	chr5	93205901	93206101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029363)	promoter-TSS (NM_029363)	494.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	5.29709607255115	5.49704700576436	5.16406809271432	5.16639435423302	5.63631358904433	5.47428313473769	5.52810722089863	5.7878292903028	0.580502048805478	0.0387354799903905	0.197588700747886
Merged-chr4-40772994-4	chr4	40772894	40773094	+	908.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15109.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	4.58319156138284	4.57002089590542	4.38206526244695	3.97190850789624	4.34595010715318	4.27019635793614	4.44596482714666	4.6879945575236	0.14039626607467	0.735044742651459	0.895431262597044
Merged-chr3-95526798-4	chr3	95526698	95526898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001267695)	promoter-TSS (NM_001267695)	12.0	NM_001267695	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	6.21806104649055	6.16515811519821	5.90182962017711	6.02027689404074	5.98282585985727	6.2352823758746	6.13024375753449	6.13764909423151	0.0600050185054474	0.799152026240601	0.922434438357924
Merged-chr11-94277143-4	chr11	94277039	94277239	+	881.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34560.0	NM_181819	278507.0	Mm.342216	NM_181819	ENSMUSG00000044177	Wfikkn2	2610304F08Rik|AY100450|Gasp1|WFIKKNRP	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding	4.04764268210407	3.9678990062375	4.13863717199832	4.10823079348882	4.01129463515878	4.21843645228864	3.65782962784163	3.99815975713528	-0.222761998853999	0.610269980520796	0.831595076242652
Merged-chr12-111036393-4	chr12	111036294	111036494	+	969.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3404.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	4.63205409125566	4.75924775356554	4.06418101430037	4.17576476771545	4.36824046524315	4.44259005583542	3.93507726344881	4.55712877447235	-0.211885341374249	0.63361022045778	0.844734068201025
Merged-chr3-126436351-4	chr3	126436259	126436459	+	956.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173451, intron 1 of 1)	intron (NM_173451, intron 1 of 1)	72507.0	NM_173451	271970.0	Mm.317021	NM_173451	ENSMUSG00000046561	Arsj	9330196J05Rik|D830047F08	arylsulfatase J	protein-coding	4.48903911391193	3.83962018952213	4.25824849005747	4.58406170927809	4.9609925008254	4.33627730784945	4.9517589692302	4.71878802120197	0.950468457123793	0.0290501754318539	0.16386692585477
Merged-chr8-57427746-3	chr8	57427652	57427852	+	873.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-28171.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	3.80176874900058	4.08472148307767	3.70065293028383	4.07487703420046	3.75564745644725	3.58547537962477	3.32774708984902	3.4682177917219	-1.16661782272599	0.0232008170810371	0.141146235812918
Merged-chr3-38423575-4	chr3	38423488	38423688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61228.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	5.6392715021501	6.08697361775548	6.2408391994198	6.03262825022244	5.98810052558376	5.79034775023526	6.03957106179269	5.89288652674893	-0.134699511755777	0.600202179087329	0.826747091301587
Merged-chr14-72783396-4	chr14	72783290	72783490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73387.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	5.92876611912299	5.91531337466834	6.22836444160949	5.93938515051637	5.68529600747165	5.59175200840907	6.12387738627992	6.03312102809173	-0.206955653862143	0.435609252166792	0.724744835370587
Merged-chr9-56891622-4	chr9	56891516	56891716	+	870.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139001, intron 5 of 9)	intron (NM_139001, intron 5 of 9)	26512.0	NM_139001	121021.0	Mm.41329	NM_139001	ENSMUSG00000032911	Cspg4	4732461B14Rik|AN2|NG2	chondroitin sulfate proteoglycan 4	protein-coding	4.45124139612607	4.22397785715137	3.96066499882492	4.42234699627765	4.26367820454465	4.66304345584725	4.30357407881797	4.77170940385944	0.522186169328929	0.207539501891681	0.511529284433255
Merged-chr14-32173960-1	chr14	32173860	32174060	+	1000.0	f0_balb.idr	intron (NM_001033988, intron 6 of 9)	RSINE1|SINE|B4	8171.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	4.70383260151506	4.32737378803033	4.30768484093521	4.62317259150072	4.44565162998161	3.92890154851548	4.64754376080642	4.47873143505769	-0.23225738985404	0.575866712380569	0.813239378859725
Merged-chr9-98350786-3	chr9	98350710	98350910	+	936.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357445, intron 1 of 3)	intron (NM_001357445, intron 1 of 3)	54240.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	3.77562063244973	3.99830419351121	3.87058587342545	3.94378821136859	3.46978983372835	3.27612347111453	3.6594042267755	3.5026432864713	-1.33180171586111	0.00776122541547674	0.0657270986137084
Merged-chr3-95662095-4	chr3	95661997	95662197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008562, exon 3 of 3)	3' UTR (NM_008562, exon 3 of 3)	3376.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	5.48613371696859	5.65628401770348	5.4255708684751	5.85071763863097	5.71313977146808	5.88232944686453	6.15302534950024	5.70325651231715	0.38799627966506	0.166774207091205	0.458155974007909
Merged-chr1-87581052-3	chr1	87580955	87581155	+	809.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160163, intron 2 of 3)	intron (NM_001160163, intron 2 of 3)	-2967.0	NM_001160165	23956.0	Mm.143717	NM_015750	ENSMUSG00000079434	Neu2	MBS|MSS|MTS	neuraminidase 2	protein-coding	3.54251122676843	3.31196881471132	3.33789543378334	3.32429341394411	3.0738066502043	3.13464941590353	3.26875415402035	3.39046507098276	-0.595073978737007	0.275190598723463	0.586982242558338
Merged-chr1-180725984-4	chr1	180725894	180726094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133225)	promoter-TSS (NM_133225)	-49.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	6.7946665692787	7.05970652863571	6.79585826013427	7.03901555071547	6.94745088907153	7.13729306089762	7.22096210362163	6.9428244711712	0.172715208441826	0.388436327634918	0.688981838974675
Merged-chr15-59435873-4	chr15	59435786	59435986	+	982.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 3 of 4)	intron (NM_001164604, intron 3 of 4)	61688.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	5.50849954734427	5.46121419550865	5.09855300038884	5.80871247940125	5.51079446658716	5.57133255636869	5.60915648340252	5.09514512480259	-0.0861593997689866	0.786056510930373	0.916758964977029
Merged-chr11-70688052-4	chr11	70687980	70688180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178116)	promoter-TSS (NM_178116)	25.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	6.79072816866352	6.56383852102172	7.04852303969683	6.98730701243783	6.71776959934175	6.64755554475218	7.13396403227178	6.78709553356441	-0.0430497336141108	0.848600238563653	0.942786711901439
Merged-chr10-96606167-3	chr10	96606076	96606276	+	877.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10825.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	3.64504554251751	3.62587295194414	3.73994841824834	3.53937585817353	3.44530392492749	3.48749924380586	3.30053065057038	3.24525372400964	-0.879160743103425	0.0866862257069089	0.321204637737263
Merged-chr3-37744089-7	chr3	37743981	37744181	+	961.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19721.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	4.85650870804105	5.28072083842247	4.67256779617593	4.11469509274946	4.55715870976572	4.76746687187214	4.5692251983242	4.74650887504363	-0.278625594381428	0.514327565084211	0.776966017760127
Merged-chr16-33372782-3	chr16	33372680	33372880	+	738.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	7956.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	3.44000596724034	3.41124337298398	3.49478165930028	3.57081669950374	3.16800110263266	3.23994405639024	3.67475975692837	3.49281174146172	-0.269150636308418	0.613875488949997	0.833585997266986
Merged-chr4-149485241-4	chr4	149485147	149485347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133435)	promoter-TSS (NM_133435)	18.0	NM_001356322	69151.0	Mm.464434	NM_026963	ENSMUSG00000028990	Lzic	1810030J04Rik|AW047580	leucine zipper and CTNNBIP1 domain containing	protein-coding	6.76792078470833	6.64749545544099	6.5401039619445	6.81369898269378	6.5288045064096	6.5383782450119	6.80228936212552	6.72174832933435	-0.0793071413152565	0.705533791901612	0.881759346486013
Merged-chr5-134314896-4	chr5	134314800	134315000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080749)	promoter-TSS (NM_001080749)	-140.0	NM_010365	14886.0	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	7.14382060042171	6.58074930457658	6.48721316359554	6.70753746996041	7.12875139214246	6.92882703121905	7.16221491773332	7.01416724368942	0.437489935292192	0.0485749219082715	0.227512954300774
Merged-chr3-83855850-4	chr3	83855758	83855958	+	912.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A3_MM|LTR|ERVK	-14250.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	5.12342253799275	4.94582921908564	4.77611079986579	4.96009487103279	5.01357422519271	5.02805844834656	4.97205656430984	4.85055755587438	0.0246612915557573	0.937748483676653	0.977460307804652
Merged-chr1-191422919-4	chr1	191422822	191423022	+	962.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25881.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	4.5902071298268	4.57299619391802	4.36278262253759	4.47903495018633	4.99266499048401	4.92049839795938	4.92859173628067	4.707711969925	0.829124341765057	0.0142233356159327	0.101038821650114
Merged-chr3-121104988-4	chr3	121104884	121105084	+	899.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66711.0	NM_028456	66568.0	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding	4.08787732601188	3.93354614784649	4.6697588224291	4.66531135989695	4.25204867055204	4.04535210985054	4.43146170465313	4.44938367177181	-0.204130696813361	0.650837167920197	0.853531930845514
Merged-chr17-34057426-3	chr17	34057319	34057519	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001317722, exon 36 of 65)	exon (NM_001317722, exon 36 of 65)	18281.0	NM_001317722	12815.0	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	4.06891017102326	3.88483477514242	4.0695793226419	2.75959026059963	7.43781780476048	7.28076712234952	7.00646210360932	6.73254134666747	8.14996256162707	2.8368351393891e-44	1.68269240322147e-40
Merged-chr10-17919210-3	chr10	17919112	17919312	+	692.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033432, intron 1 of 3)	intron (NM_001033432, intron 1 of 3)	28855.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	3.43812022885218	3.8484147692254	3.7484831620692	3.50291859997309	3.28769405572473	3.61226218318212	3.48200230831597	3.18078064675599	-0.824301667509911	0.124149023561894	0.390992275271539
Merged-chr13-21169841-4	chr13	21169740	21169940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10091.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	5.94263411354006	5.71936694515973	5.85811934634559	5.70298233753763	5.78988053476491	5.61983257224186	5.32031229627433	5.63712976808368	-0.313944458250363	0.245701356940359	0.556825550358437
Merged-chr19-4333506-2	chr19	4333406	4333606	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001984, intron 12 of 20)	intron (NM_001001984, intron 12 of 20)	-27284.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	2.81989649961157	3.18276508261941	3.02633805431504	3.15798251947258	3.18164081019439	3.13528643489837	3.39379179382494	3.08702840697758	0.552403965820966	0.345452068451883	0.653735298398409
Merged-chr13-34693285-1	chr13	34693185	34693385	+	616.0	f0_balb.idr	Intergenic	MER117|DNA|hAT-Charlie	40362.0	NR_105041	101056149.0	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	-	predicted gene 15908	ncRNA	3.11208428305905	3.05538548945141	3.22335921131207	3.4238784177663	2.88338481469352	2.96386482698548	3.10088488437551	2.85627985276619	-1.12643516965739	0.0638413564272421	0.268345571579938
Merged-chr16-10982741-4	chr16	10982633	10982833	+	904.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	L2b|LINE|L2	10388.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	4.58974401892116	4.85917845173602	4.42318991986641	4.52107405738789	4.56760603017134	4.45960025245437	4.35865506597103	4.62604725507437	-0.215929872842918	0.557738479957849	0.802816324871987
Merged-chr17-73303387-2	chr17	73303287	73303487	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95909.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	2.90957961993511	2.85758088111236	2.90996548173904	2.63330378401234	2.83364148022812	2.68169296758838	2.7120600854074	3.02064376643315	-0.0208332085863547	0.974019290447137	0.99070761752982
Merged-chr8-56299611-4	chr8	56299520	56299720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 3 of 6)	intron (NM_008278, intron 3 of 6)	5068.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	7.0894985987576	6.51750795098579	6.676499128499	7.16834525704938	6.91708688868291	6.94510980893026	7.03213720163949	6.84855256965457	0.0463440024429968	0.839904983138702	0.939166584762349
Merged-chr5-45449243-2	chr5	45449143	45449343	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024236, intron 1 of 6)	intron (NM_024236, intron 1 of 6)	986.0	NM_024236	110391.0	Mm.30204	NM_024236	ENSMUSG00000015806	Qdpr	2610008L04Rik|D5Ertd371e|Dhpr|PKU2	quinoid dihydropteridine reductase	protein-coding	2.77284943047782	3.04934535036292	3.16542174167916	2.99860896281818	2.83322519039194	3.15834513396541	3.25974743082	3.32271015832735	0.592814974022058	0.330620986622591	0.641981554220558
Merged-chr1-192759633-3	chr1	192759527	192759727	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 2 of 11)	intron (NM_144881, intron 2 of 11)	11592.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	3.29714763292716	3.12529554225882	3.51746301301167	3.01298116554825	4.53577763841731	4.20664916626228	4.40786680797922	4.52772555331184	3.69964365056995	1.37549323188362e-13	1.7452091399687e-11
Merged-chr10-99169177-6	chr10	99169092	99169292	+	963.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	61057.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	4.41339262573376	4.19215046760436	4.49773448878901	4.81758989070972	4.52009982926073	4.49896897683828	4.51650619587372	4.22599614184143	-0.160956804626236	0.688092020257259	0.872614457715549
Merged-chr10-5826025-3	chr10	5825936	5826136	+	802.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019958, exon 5 of 5)	3' UTR (NM_019958, exon 5 of 5)	-2093.0	NM_175374	108853.0	Mm.55082	NM_175374	ENSMUSG00000019774	Mtrf1l	9130004K12Rik	mitochondrial translational release factor 1-like	protein-coding	3.49739013340469	3.72478468604845	3.55381217327982	3.88856136059054	3.56263414775879	3.49113951720126	3.36692085464603	3.65683493238498	-0.524174233287972	0.299219506970482	0.611506080756034
Merged-chr11-106660823-4	chr11	106660731	106660931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001032378, intron 13 of 13)	intron (NM_001032378, intron 13 of 13)	-47901.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	6.01875305178943	6.13077961144609	6.06045665051193	5.99648012245791	5.49144143162825	5.94549119009927	5.58028648520682	5.86204978849829	-0.532075703495381	0.0385105435422926	0.196878688414626
Merged-chr3-135628993-2	chr3	135628903	135629103	+	575.0	f0_balb.idr|f1_balb.idr	intron (NM_008689, intron 6 of 24)	intron (NM_008689, intron 6 of 24)	62544.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	3.45674814631804	3.65160050610362	3.56917296083841	3.47401307159493	3.46756495399464	3.97805239781508	3.44418674931027	3.26779873186135	0.08083942222691	0.878045357776307	0.954348743604321
Merged-chr12-3391555-4	chr12	3391462	3391662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008445, intron 5 of 7)	intron (NM_008445, intron 5 of 7)	26430.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	5.80042157089025	5.91667275716905	6.13478072770151	6.2821381325736	6.04887591340577	6.12044827742766	5.86904067581134	6.04967383261472	-0.061380372556481	0.808434216969782	0.926075271250497
Merged-chr4-117829661-2	chr4	117829561	117829761	+	708.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5597.0	NM_008135	14664.0	Mm.244549	NM_008135	ENSMUSG00000028542	Slc6a9	Glyt-1|Glyt1	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	protein-coding	2.91611845079781	2.57271105534888	2.8512965576449	2.55768791560513	2.86019845982397	3.02883414650091	3.18663955502594	3.24931197872705	1.6139738641307	0.0115823779693904	0.0876298981168407
Merged-chr11-44425942-3	chr11	44425813	44426013	+	881.833374	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25850.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	2.98658202567678	2.98415944677189	3.14288328850678	3.12935546033975	4.06407463061263	3.76085516488158	3.67124611490243	4.10547629539089	2.85135681528999	2.01482017807116e-06	6.58461365725101e-05
Merged-chr16-57555125-4	chr16	57555030	57555230	+	956.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	5888.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	5.41528635914977	5.36362990922035	5.51644218540833	5.22336093366096	4.92363603323581	5.04847680526693	4.92384025733681	4.74062356070401	-0.875901986916331	0.00485410038166887	0.0464957624904869
Merged-chr10-110745420-4	chr10	110745309	110745509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178609)	promoter-TSS (NM_178609)	-30.0	NM_001358560	52679.0	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e|E2F-7	E2F transcription factor 7	protein-coding	6.87252588500562	6.64213413252009	7.00786969581888	7.30826770066178	7.099506279959	7.32867838845756	7.24474424586056	7.39306273640994	0.370015502009602	0.0952684922969936	0.337773061087698
Merged-chr1-89940582-4	chr1	89940488	89940688	+	855.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9412.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	4.43551544661279	4.79769555244351	4.06072427161142	4.36804853502326	4.27420392813474	4.23997317684451	4.28874244586907	4.39203871635765	-0.340696389094275	0.404397068768199	0.701481185306128
Merged-chr1-106712591-3	chr1	106712535	106712735	+	604.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177410, exon 1 of 1)	exon (NM_177410, exon 1 of 1)	1655.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	3.39648565953864	3.2131219844883	3.07288138176616	2.90842555116854	3.22612094548621	2.83084402864536	2.93480202550682	3.24340785925494	-0.3125361532776	0.615632249786898	0.834541172918063
Merged-chr5-121409073-4	chr5	121408968	121409168	+	876.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172722, intron 3 of 23)	intron (NM_172722, intron 3 of 23)	11086.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	4.05120210923005	3.79818674576084	3.74043254350299	3.73688314248901	3.81112215831184	4.26803796472382	3.72596897418033	4.47549904475498	0.725632330923126	0.128180430560041	0.398417243093152
Merged-chr8-105965590-4	chr8	105965479	105965679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045594, intron 1 of 23)	intron (NR_045594, intron 1 of 23)	536.0	NM_001253804	20498.0	Mm.292447	NM_009195	ENSMUSG00000017765	Slc12a4	AW546649|KCC1|RBCKCC1	solute carrier family 12, member 4	protein-coding	5.31962580745089	5.31840950713139	5.58122805488269	5.21365320080136	5.11844639459364	5.20526506246531	5.04001870164835	5.06099456510233	-0.456747839683212	0.127168807473792	0.39669333627737
Merged-chr12-8345045-3	chr12	8344934	8345134	+	822.638855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31601.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	3.81633753977764	3.62596154273702	4.00517503383202	4.15518659530802	3.84002035619588	3.98748839277438	3.58336898391308	3.53318781178791	-0.504536152725896	0.306673875005425	0.619072424937513
Merged-chr7-24082222-1	chr7	24082122	24082322	+	1000.0	f0_c57.idr	5' UTR (NM_001045486, exon 1 of 5)	5' UTR (NM_001045486, exon 1 of 5)	325.0	NM_001289637	210135.0	Mm.32254	NM_172483	ENSMUSG00000057101	Zfp180	2310040I01Rik|AI852378|D130011P11|HHZ168	zinc finger protein 180	protein-coding	5.62618201812719	5.28646619156615	5.67905552477326	5.34989910232261	5.47007698056141	5.90356638971177	6.10973027261822	5.90636652636627	0.625184936210923	0.0311532978109476	0.171683228931979
Merged-chr3-153975886-4	chr3	153975779	153975979	+	849.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081263, intron 1 of 21)	intron (NM_001081263, intron 1 of 21)	2443.0	NM_001081263	242259.0	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	4.23238472626129	3.80917090809213	4.23306195205564	4.41228441959957	3.91792619319952	3.97663789510284	3.72705105116914	3.95823256420643	-0.808287375779526	0.0739770254088668	0.293054913823338
Merged-chr11-114852537-4	chr11	114852401	114852601	+	897.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147217, intron 1 of 3)	CpG	471.0	NM_147217	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	4.26980925327329	4.09581262715942	4.7529395300154	4.21102975615051	4.30808113708637	4.30350536576196	4.20602439090565	4.22187235435346	-0.20621650263186	0.61784413889315	0.835731112257238
Merged-chr13-114953619-4	chr13	114953511	114953711	+	966.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-21511.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	5.23149468891632	4.60736665604545	5.10738123437799	5.45066866854854	5.09847243560833	5.21451278640882	5.14592340513284	5.03652094510906	-0.0501819824529342	0.884718759129112	0.956700019808816
Merged-chr5-123865616-4	chr5	123865505	123865705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030701)	promoter-TSS (NM_030701)	-89.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	6.27272395307109	7.17512505218055	6.78163372353506	6.01326326056956	6.86749340479171	6.9165786346751	6.26142135614101	5.97667917221742	-0.100822436853687	0.765401651599236	0.908220654138999
Merged-chr9-40631343-4	chr9	40631232	40631432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-54632.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	5.96446996550646	5.70266951903561	5.54550365751737	6.0943450666893	5.49179541716237	5.72329771003326	5.9139307177639	5.9820768225551	-0.122488357840188	0.66679941726134	0.862118979153907
Merged-chr5-140830032-2	chr5	140829932	140830132	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010302, exon 1 of 4)	exon (NM_010302, exon 1 of 4)	399.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	3.9526925250535	3.70671099916481	3.80827666653414	3.52900626350806	4.25035466020376	3.50704702575534	3.74084870411391	3.95083666053287	0.438226976988722	0.381447068959107	0.683680933735559
Merged-chr1-170361461-3	chr1	170361357	170361557	+	849.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 4 of 9)	intron (NM_001109985, intron 4 of 9)	52596.0	NM_001039593	76925.0	Mm.33631	NM_001039593	ENSMUSG00000042800	Spata46	1700015E13Rik	spermatogenesis associated 46	protein-coding	3.83288434669866	3.38820863040805	4.23384403448534	4.25787495191667	3.00775863432512	3.4405018562012	3.44048889227351	3.38743843183439	-2.17327506609606	0.000358578069775463	0.00587145811560794
Merged-chr11-83066041-3	chr11	83065963	83066163	+	827.133362	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011408, intron 1 of 1)	intron (NM_011408, intron 1 of 1)	951.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	3.40280359617768	3.65511325266946	3.34629704416463	3.12422033219996	3.42418080488852	3.39994146431647	3.38998740667472	3.34454986456243	0.0104635414007645	0.984438773452171	0.994315323522068
Merged-chr8-116627356-4	chr8	116627267	116627467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	Lx8|LINE|L1	105624.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	6.02014269811108	5.90272840960758	5.63478401552806	5.78566388638643	6.28194214263302	6.15257509916066	5.81216759631462	5.95256520474826	0.368557328884579	0.152365556526628	0.436392561886724
Merged-chr1-37308816-4	chr1	37308703	37308903	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	8965.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	5.10302012986302	4.84303446103519	4.82567826327617	4.95942978252091	5.11432878990355	4.92256524181839	4.84100284446912	5.2192560115687	0.195008416845186	0.542368234762915	0.793816675281769
Merged-chr4-101670600-3	chr4	101670505	101670705	+	634.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	22822.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	2.86259078781394	2.96314815431666	2.92247237589447	2.82640188907852	2.81285049347271	2.61917356463798	3.02105684783684	2.66499750947989	-0.463887292294077	0.4705404317604	0.749241586333353
Merged-chr8-83998456-4	chr8	83998357	83998557	+	985.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081415, exon 1 of 5)	exon (NM_001081415, exon 1 of 5)	785.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	5.29373400901304	5.48447457173871	4.85526738154369	5.35299303424871	5.49930759637786	5.55829106923791	5.51911294332694	5.3807997591564	0.376063379388844	0.208388809795966	0.512681705117761
Merged-chr10-99130815-4	chr10	99130704	99130904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 4 of 12)	intron (NR_153333, intron 4 of 12)	22669.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	7.01002770602763	6.70445681929124	6.91260712981641	7.33475460538174	6.48121637639504	6.06643711596505	6.91523627648754	6.86862411183323	-0.554431712922353	0.0371299279150127	0.19220881011365
Merged-chr12-40379694-4	chr12	40379590	40379790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178845, intron 1 of 11)	intron (NM_178845, intron 1 of 11)	66100.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	6.01822581720879	6.26454101062937	5.62276045482694	6.00158778332769	6.1979948242049	5.96324897494039	5.98854066553522	5.88046778554005	0.0305352162580203	0.906960222738386	0.965481261274948
Merged-chr8-11550756-4	chr8	11550619	11550819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024248)	promoter-TSS (NM_024248)	52.0	NM_024248	71941.0	Mm.196576	NM_024248	ENSMUSG00000056228	Cars2	2310051N18Rik|2410044A07Rik|D530030H10Rik|cysRS	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	7.71857197316349	7.57177266186076	7.79007519508402	7.72714264886998	7.70457179327282	7.4829762333253	7.69814366254976	7.78478960082889	-0.0379411318472049	0.824347623404808	0.932613065076433
Merged-chr3-32403292-4	chr3	32403192	32403392	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32859.0	NM_008839	18706.0	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding	6.01908622292101	6.38799054645528	5.46311264282602	5.26924305521693	5.59599905353399	5.98217978034226	5.34191671104233	5.39714199840777	-0.422151106591102	0.241053260653187	0.551619163882296
Merged-chr5-121871203-6	chr5	121871077	121871277	+	913.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007804, intron 17 of 22)	intron (NM_007804, intron 17 of 22)	22180.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	3.12639045820631	2.96265699867755	3.18533553516757	2.71558705847262	2.96302860241424	3.17840034770117	3.33154276196046	3.29301871216252	0.786334912409034	0.191794636651934	0.491211515624929
Merged-chr14-69805486-5	chr14	69805404	69805604	+	971.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153514)	promoter-TSS (NM_153514)	41.0	NM_153514	246710.0	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	5.5273153906185	5.75241460347522	5.66352198024574	5.70601393845432	5.90800020122283	5.88728396112163	5.60921650254377	5.46648574060158	0.113896609314744	0.671778223758401	0.864905117611895
Merged-chr13-3373155-4	chr13	3373099	3373299	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105104.0	NR_015522	76937.0	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	5.71064923069882	5.62202315339319	6.01981238240699	5.30411230154701	4.74484252209001	5.31221732840176	5.10591641773212	5.83999175159355	-0.64761036528899	0.0784271562461459	0.3031258989164
Merged-chr7-24587006-3	chr7	24586902	24587102	+	884.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023154)	promoter-TSS (NM_023154)	-541.0	NM_023154	66071.0	Mm.29553	NM_023154	ENSMUSG00000064254	Ethe1	0610025L15Rik|Hsco	ethylmalonic encephalopathy 1	protein-coding	3.51482561277564	3.54847390935659	3.87804438622917	4.01838100936414	3.71361332855678	3.63051866585543	3.66876156478316	3.62780421714747	-0.332134409593874	0.502090482393631	0.769457185302407
Merged-chr2-30135086-4	chr2	30134985	30135185	+	924.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146252, intron 2 of 11)	intron (NM_146252, intron 2 of 11)	1339.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	4.34580399046915	4.8658931144744	4.47681588687811	3.87671693156048	4.52175333545087	4.22424838010701	4.18375434706962	4.8917356278341	0.114906147136221	0.805181317954339	0.925171083261684
Merged-chr12-4841605-3	chr12	4841490	4841690	+	966.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016863)	promoter-TSS (NM_016863)	5.0	NM_016863	14226.0	Mm.20453	NM_016863	ENSMUSG00000020635	Fkbp1b	12.6kDa|AW494148|FKBP12.6|calstabin2	FK506 binding protein 1b	protein-coding	4.23633002412951	3.94210227113066	4.19792893018794	3.93229680018385	3.82127272178091	3.89805263275059	3.64878302563909	3.66024311257819	-0.889635435977701	0.0521065519774633	0.237660223838532
Merged-chr12-17808741-4	chr12	17808617	17808817	+	802.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117908.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	3.4334360787448	3.70317167368414	3.43387856652211	3.30837694586569	3.5600027475718	3.548893219704	3.36258154213223	3.69315781546615	0.248437064985558	0.624339127461949	0.839393596001854
Merged-chr3-122245527-5	chr3	122245420	122245620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008129)	promoter-TSS (NM_008129)	-37.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	7.82896792205753	7.98957877329342	7.81470428782763	7.6860338371254	8.2051785084437	8.18782590020745	8.49373383743678	7.64207094493547	0.434350859565234	0.0373953997023284	0.192979566114118
Merged-chr3-40798714-4	chr3	40798610	40798810	+	887.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1241.0	NM_173169	20873.0	Mm.3794	NM_011495	ENSMUSG00000025758	Plk4	1700028H20|AI385771|Sak|Stk18	polo like kinase 4	protein-coding	4.27424506553296	4.24522580877959	3.7397211246836	4.12422917046021	4.31505164742943	4.60882833975062	4.56290106948115	3.97767074691382	0.662030728655114	0.132120618296113	0.404624813888968
Merged-chr10-127103836-4	chr10	127103714	127103914	+	881.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177614, intron 5 of 13)	intron (NM_177614, intron 5 of 13)	17346.0	NM_177614	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	4.40346293660893	4.3625387882004	4.27238351521835	4.4058505243789	4.39251154248951	4.44524159375923	4.34223357574103	4.35897103430648	0.0440455585603616	0.904994183538623	0.964695555007872
Merged-chr2-135488499-3	chr2	135488400	135488600	+	829.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94720.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	3.55654019931132	3.38200187019355	3.43574890974506	3.6602364313464	3.93714165290721	3.93930202455308	3.65328123686738	3.86267133804673	0.992468426483375	0.0396002888177052	0.200476331325939
Merged-chr5-32721602-2	chr5	32721507	32721707	+	816.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	24735.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	3.05664589029939	2.94368201708389	3.35884939080059	3.42179788678224	2.73197143723085	2.76969695749948	2.57891117178324	2.58349871568442	-2.7457527035468	0.000364273900084574	0.00594513630391844
Merged-chr13-23446801-4	chr13	23446686	23446886	+	860.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15769.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	4.25131263330449	4.32290473319663	4.29471169307245	4.34743141246983	4.01149453593189	4.23922498715618	3.89005417643046	4.20514844351189	-0.557563003347491	0.167796931033249	0.459695448875569
Merged-chr6-7845020-1	chr6	7844920	7845120	+	1000.0	f0_c57.idr	promoter-TSS (NM_052993)	promoter-TSS (NM_052993)	-204.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	5.71939559963038	5.69425969510734	6.12577813035389	5.58290353122315	5.20906056675635	5.50911336625774	5.42737817182754	5.45085055628806	-0.667189386992522	0.0210990817046592	0.132657900817307
Merged-chr7-128002276-4	chr7	128002176	128002376	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2102.0	NM_001079932	434246.0	Mm.389924	NM_001079932	ENSMUSG00000042828	Trim72	BC067209|MG53	tripartite motif-containing 72	protein-coding	4.36157673782466	4.55058297273695	4.36225702206101	4.21733894817757	4.25945333802245	4.76875846999032	4.15717956742639	4.31516981362832	0.0437208289995314	0.913511294696704	0.967557224197028
Merged-chr15-59517039-3	chr15	59516934	59517134	+	764.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-131620.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	3.30845415674553	3.56366801143169	3.76361731406276	3.64676246386395	3.22541872467408	3.15123315506101	3.29715676265966	3.36642213482615	-1.14778205524862	0.0343783660631067	0.183297207341264
Merged-chr15-73177336-4	chr15	73177236	73177436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	L3b|LINE|CR1	7611.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	5.34841789971154	5.45892037330703	5.46900788339064	5.76514239933298	5.4156224384839	5.55574027851097	5.69844929262168	5.72334193167849	0.0983124471707818	0.729472101088776	0.892654153644778
Merged-chr7-144937680-4	chr7	144937570	144937770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007631, intron 2 of 4)	intron (NM_007631, intron 2 of 4)	2255.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	5.76236915523492	5.84078711273921	5.57329824621014	5.51412384518695	6.15644433395285	5.80848261550728	6.22562939671847	6.09008836521041	0.667632810652269	0.00900427559261691	0.0731889154284434
Merged-chr17-29259688-4	chr17	29259591	29259791	+	838.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026845, intron 2 of 3)	intron (NM_026845, intron 2 of 3)	4280.0	NM_026845	68816.0	Mm.328928	NM_026845	ENSMUSG00000024007	Ppil1	1110060O10Rik|AI327391|Cypl1	peptidylprolyl isomerase (cyclophilin)-like 1	protein-coding	4.10014916553948	4.13022476646058	3.95149801356484	3.77077465505715	4.31891085763143	4.12699304310298	4.08293894117836	4.31356876981959	0.617890605372724	0.138472866751382	0.413987825446446
Merged-chr12-102450638-4	chr12	102450554	102450754	+	997.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10841.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.83254096407593	6.55204975639659	7.73687674732515	7.87659862480275	5.29228597328835	5.40310063739489	5.98883190431978	6.04050680833085	-2.40553601835777	5.94090380293056e-06	0.000172951980281716
Merged-chr6-113307787-4	chr6	113307684	113307884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282128, intron 1 of 13)	intron (NM_001282128, intron 1 of 13)	647.0	NM_001282126	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	6.69032780619778	6.88446046267174	6.48518098247045	6.29175259723297	6.66060971081052	6.57320683515545	6.72818816167715	6.53122199802598	0.0453233563877038	0.844769499033845	0.941180176672266
Merged-chr4-43508814-4	chr4	43508724	43508924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013377)	promoter-TSS (NM_001013377)	-77.0	NM_001013377	230098.0	Mm.331567	NM_001013377	ENSMUSG00000051517	Arhgef39	E130306D19Rik	Rho guanine nucleotide exchange factor (GEF) 39	protein-coding	6.9729001477235	6.81956029225711	6.50247045882999	6.71977111474865	6.70371769288023	6.7298398400359	6.71921511225686	6.51500982352951	-0.131800665150066	0.534362658778193	0.789148920892424
Merged-chr17-17915150-3	chr17	17915042	17915242	+	949.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27318.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	3.24210619362404	3.36344407556613	3.30919004915092	3.19268137756983	4.22561013729251	3.61022103606667	3.6848711778259	3.43175964850955	1.64988054217304	0.00196624403632533	0.0231369291224336
Merged-chr1-131527645-4	chr1	131527545	131527745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175382)	promoter-TSS (NM_175382)	-258.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	9.31929815545341	9.34707686849498	9.28658609789237	9.30649925110291	9.13855588818172	9.12527594371731	9.02998192110634	8.97559146851652	-0.302175209029357	0.0250319575908471	0.148565805833312
Merged-chr7-12978876-2	chr7	12978776	12978976	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168562, intron 1 of 4)	intron (NM_001168562, intron 1 of 4)	1028.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	2.86725412084571	3.08909125573406	3.07689920073652	2.96292027296434	3.44798410357245	3.37195114157316	3.2996122797996	3.41484709519853	1.47325387387951	0.00697004030611782	0.0606875228072368
Merged-chr10-96377738-4	chr10	96377631	96377831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	151524.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	6.98311145765612	7.35227734418295	7.54517094395993	7.35290899188008	6.96833572040961	6.80215707665855	7.21812624753116	7.1039660185461	-0.399969448105381	0.0558697029212121	0.247408000053491
Merged-chr14-54756556-4	chr14	54756413	54756613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	25373.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	6.46612660139214	6.91835421121386	7.07089989077526	7.0727555998414	7.00930115652649	6.71930608936351	7.29690033486925	7.04232495539651	0.168829618567527	0.467413828367922	0.746986879554531
Merged-chr11-54088461-4	chr11	54088350	54088550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-12474.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	5.84246681818549	5.99740891282049	5.39278254202341	6.06853265418956	6.0658207086454	5.72995557452063	6.02996428908031	5.97419952949072	0.149899379841525	0.587556917526524	0.819278583121838
Merged-chr3-133093125-4	chr3	133093027	133093227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027927, intron 1 of 6)	intron (NM_027927, intron 1 of 6)	-1088.0	NM_001356309	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	5.56173552709032	5.71681956493097	5.77520457829517	5.90255192706533	5.97285939268367	5.84872260137916	5.79400385816929	6.13073485212683	0.301595328865253	0.240228709386034	0.550722344221875
Merged-chr5-140616843-4	chr5	140616747	140616947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9506.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	8.23723169616656	8.59852149526116	8.08539834411974	8.17986718590293	8.24240672439105	8.24315013361645	8.09168859462106	7.8770588793764	-0.214214923101508	0.253327289337305	0.564651566597984
Merged-chr13-45115123-4	chr13	45115037	45115237	+	749.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113041.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	4.03176900932898	3.92224700712265	3.92751047787089	4.35146283371905	4.08451817380232	4.25433385790258	4.20069254108179	4.37982341059132	0.349176997991277	0.417506706623175	0.711296288222139
Merged-chr8-8334664-4	chr8	8334548	8334748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	326125.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	5.17907587640061	5.15118869823223	5.27896887138888	5.6586907479656	5.35496638756424	5.6021524340802	5.50888076587483	5.48005458736171	0.219700900416216	0.470346632505372	0.749078941154353
Merged-chr2-30464164-4	chr2	30464072	30464272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	10027.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	6.22207985070966	5.53931057999484	5.41863227228836	5.95525352781028	6.01422655451189	5.9146260178985	5.92031784764229	5.98922055617437	0.211913045565372	0.4572708678685	0.740407569101255
Merged-chr5-105685963-4	chr5	105685815	105686015	+	933.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-14054.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	3.62733819295667	3.96265385527677	3.87874595702182	3.174945833935	4.50761100034863	4.40678583223135	4.41289709416292	4.70208108640878	2.20220483625405	4.69155879979508e-06	0.000140038022272205
Merged-chr8-92853305-4	chr8	92853206	92853406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008610, exon 13 of 13)	3' UTR (NM_008610, exon 13 of 13)	-2027.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	6.95194068234524	6.52496872970674	7.06215533398135	7.05376973908152	6.6383638758789	6.84804349372309	7.2481669736298	6.71236869956277	-0.0537963603425909	0.822024877229331	0.931969493426564
Merged-chr3-105932713-4	chr3	105932623	105932823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033780)	promoter-TSS (NM_001033780)	-59.0	NM_001033780	433638.0	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	5.68562894716444	5.76824849690882	5.40492483195616	5.85823534229498	5.50570674088791	5.83576609881153	5.52570296025399	5.89142971064433	-0.0176705675020699	0.949548151053069	0.981953913174581
Merged-chr4-46565248-4	chr4	46565095	46565295	+	838.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178893, intron 1 of 12)	intron (NM_178893, intron 1 of 12)	1245.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	4.13292098466752	4.16143271508274	4.17942395189958	4.62896575222799	4.01252353383477	4.10836086871371	3.80398473407452	4.17684925181906	-0.717952625458773	0.103083592330765	0.352686250789021
Merged-chr12-3868765-4	chr12	3868646	3868846	+	944.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-6502.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	5.04395278145117	4.95597870559148	4.97902600585782	5.11421361153584	4.69004681058941	4.8529645938683	4.69597880145532	5.07295669159911	-0.401010656639458	0.219245606534403	0.526748085921778
Merged-chr18-4918524-4	chr18	4918419	4918619	+	827.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	106033.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	4.47448853972258	3.95366494511957	4.43487915297666	4.85757126797822	4.12258722887082	4.38795717808577	4.6022768092362	3.99884469031008	-0.431795127705274	0.346960122866273	0.655038846360895
Merged-chr4-48124942-4	chr4	48124826	48125026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026343)	promoter-TSS (NM_026343)	7.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	6.94956231316241	6.73063968145438	6.84433042652038	7.00101045196648	6.90368162139049	6.9351299918865	6.87692130500968	7.07878075038144	0.0793005759046646	0.685557049435925	0.871457544812924
Merged-chr4-97752436-2	chr4	97752349	97752549	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-25177.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	5.4105680134876	5.08236889257024	4.96091699035482	5.34070988953713	5.23322100784931	5.44139311723953	5.2117021559186	5.29454607951509	0.133590237563587	0.658564933478764	0.857906174964951
Merged-chr4-132076856-3	chr4	132076765	132076965	+	753.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1552.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	2.86476521160205	2.71716473978793	2.92481918272804	2.83466703537079	2.74453924660317	2.90912662644309	2.85488189469782	2.86368746694361	0.0223464506241973	0.970700681934027	0.989495522353561
Merged-chr9-21031501-4	chr9	21031389	21031589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008319)	promoter-TSS (NM_008319)	-549.0	NM_008319	15898.0	Mm.4629	NM_008319	ENSMUSG00000032174	Icam5	CD50|ICAM-3|Icam3|TLN|Tlcn	intercellular adhesion molecule 5, telencephalin	protein-coding	5.25378972270157	5.84000731937229	5.07148221437614	5.58601770356697	5.69651382523078	5.8105526241573	5.53013010370996	5.75352155850832	0.363261638922688	0.232335741219392	0.541946192758711
Merged-chr17-8283791-4	chr17	8283688	8283888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018819)	promoter-TSS (NM_018819)	-25.0	NM_018819	55951.0	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	8.10378392732424	8.2127038901909	8.47019765866969	8.10157109780288	8.07982669640259	8.17549708462028	8.42125045119039	8.0064113085399	-0.061148604531092	0.733120761523952	0.894383455043507
Merged-chr12-76319087-4	chr12	76318970	76319170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138745, intron 27 of 27)	HAL1|LINE|L1	-5821.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	7.55001463615017	7.79773261371254	7.81610181941083	8.17999890205108	7.96741334791415	7.90597738712484	7.95676578899875	7.92823916038094	0.091161044841158	0.632946419197018	0.844280824760539
Merged-chr14-30694967-4	chr14	30694808	30695008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19941.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	6.13318288131883	5.86017694645837	5.99517935188933	6.37585500665231	5.60063449225505	5.78244041878175	5.57606419388726	5.68322417859288	-0.746618195179349	0.00474547446308863	0.0457446000552797
Merged-chr16-93683777-3	chr16	93683665	93683865	+	805.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173047, intron 1 of 2)	CpG	546.0	NM_173047	109857.0	Mm.4512	NM_173047	ENSMUSG00000022947	Cbr3	1110001J05Rik|C81353	carbonyl reductase 3	protein-coding	4.12104788274763	4.20872567283056	3.6233526774946	3.65762762121764	3.86691411563486	4.0679558215617	3.6101340291446	3.7373700841584	-0.262792687912742	0.5959067820391	0.824220761703025
Merged-chr15-39659657-4	chr15	39659505	39659705	+	746.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256384)	promoter-TSS (NM_001256384)	94.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	3.38032476486788	3.65293217705541	3.9440815104519	3.83874912818955	3.77158951598051	3.75427864371996	3.73139176139039	4.26209832920939	0.493321089392712	0.326744196428684	0.638288694392988
Merged-chr14-33232225-1	chr14	33232125	33232325	+	779.0	f0_balb.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	15402.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	3.75449902837675	3.19153517691705	3.41559273060951	3.5999472255753	3.21632406605625	3.28333288921337	3.34619112047728	3.41373262678464	-0.682518640066062	0.209811278466055	0.514330716906745
Merged-chr1-138248274-4	chr1	138248180	138248380	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25458.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	5.83682921570845	5.28103642545803	5.34368707341709	5.38924980169836	5.41251404783086	5.25439987157983	5.40424319683213	5.33998301009896	-0.204160287751656	0.490535191390959	0.76225273216969
Merged-chr2-165779151-3	chr2	165779061	165779261	+	787.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79012.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	3.67039303107888	3.56919264932057	3.56845463801621	3.37851613071469	3.37318735422847	3.63037902672166	3.4441805690579	3.66873664320909	-0.0383878189118552	0.938720433394928	0.977759950372676
Merged-chr7-127471855-4	chr7	127471754	127471954	+	951.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145589, exon 1 of 11)	5' UTR (NM_145589, exon 1 of 11)	240.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	5.07971422312946	5.9538421972875	4.62037176956931	4.39876075108765	5.42119925726778	5.72305086350428	5.47137624246077	4.92748694786193	0.421870274649735	0.533690494501967	0.788909198125842
Merged-chr2-180702057-4	chr2	180701955	180702155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175551)	promoter-TSS (NM_175551)	47.0	NM_011805	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	6.63988046991114	6.65821386810191	6.60891574621608	6.7081482904048	6.81989255704694	6.87958659103894	6.91388069282418	7.03964509364137	0.357476974032595	0.0673337508852309	0.276852692095413
Merged-chr18-36348443-7	chr18	36348344	36348544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081365)	promoter-TSS (NM_001081365)	-180.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	5.48419421385107	5.46410492938112	5.56517492979732	5.48394988087351	5.30746888647387	5.41991441744242	5.45768184929413	5.53516457925683	-0.124734664324032	0.644960896090299	0.850573912153132
Merged-chr19-23136014-4	chr19	23135910	23136110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5216.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	6.8616805649261	7.16766397155239	6.89005285816217	6.88603276464125	6.90792617498092	7.07992584283673	6.88163205957444	6.77285127052067	-0.0603333707174683	0.76335633827788	0.90713960302321
Merged-chr14-103929983-4	chr14	103929906	103930106	+	974.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85530.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	4.92014015218138	4.49870290330618	4.77771848982321	5.0098183878413	4.86425156487955	5.02341550839118	4.55226759830283	4.88335179069132	0.0292558601541034	0.934303786010423	0.976343716900135
Merged-chr17-74668105-4	chr17	74667998	74668198	+	977.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007566, intron 62 of 72)	intron (NM_007566, intron 62 of 72)	-49652.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	5.78256459853863	5.44661841276175	4.98909055398656	5.54217622629417	5.69248399435677	5.39081215227979	5.64044590474421	5.30812050339866	0.0878262871245478	0.777917411042823	0.91346294604842
Merged-chr11-80156934-4	chr11	80156830	80157030	+	973.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 2 of 10)	intron (NM_172133, intron 2 of 10)	2768.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	5.26548700827832	5.3371547772139	5.47139537562641	5.27181171788098	5.51404123419829	5.5611377733117	5.1077483612613	5.46755225166423	0.166677714194622	0.563037321544972	0.806026296941927
Merged-chr2-156841962-3	chr2	156841876	156842076	+	888.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291124, intron 1 of 3)	intron (NM_001291124, intron 1 of 3)	1969.0	NM_173396	228839.0	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	3.39416775473883	3.5347687370182	3.50143845214487	3.30964373118292	3.19703599087644	3.19240351299563	3.26654688583645	3.59770715319555	-0.39364759025587	0.464164811881652	0.745275025262775
Merged-chr7-44527701-4	chr7	44527580	44527780	+	932.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019866, exon 6 of 6)	3' UTR (NM_019866, exon 6 of 6)	-3011.0	NM_146189	233199.0	Mm.358888	NM_146189	ENSMUSG00000038670	Mybpc2	-	myosin binding protein C, fast-type	protein-coding	4.42452203545875	4.52980391432129	4.04885117358831	4.09614548737367	4.35297401503189	4.55504474848862	4.32134270081017	4.3809562134042	0.285597000626037	0.473204863662606	0.751076459932416
Merged-chr8-40294490-4	chr8	40294380	40294580	+	933.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7527.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	5.83492626134273	5.81784545552592	6.43057557725289	6.54171394899703	4.72303358389281	4.84059769744142	4.99716941922521	5.44266648987283	-2.03652955305374	3.554817321691e-09	2.06049138551013e-07
Merged-chr19-3389323-4	chr19	3389237	3389437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286557)	promoter-TSS (NM_001286557)	-41.0	NM_001286557	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	7.85250693406073	8.06552631976844	7.69916151157091	7.63187644874018	7.44987041607144	7.79148854110745	7.8085386683692	7.56394930934576	-0.212736001028326	0.267671071261169	0.579369292422039
Merged-chr2-60282079-3	chr2	60281967	60282167	+	882.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025422, intron 1 of 4)	B4A|SINE|B4	2417.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	3.40221456976048	3.36603647110294	3.50553878931191	3.12813514290516	3.18786831397653	3.28035142054302	3.21959472735915	3.40075666068926	-0.274416678021913	0.613109262234189	0.833119630742334
Merged-chr11-120355179-4	chr11	120355082	120355282	+	943.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6352.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	4.5194291821434	4.47966115056151	4.3197776110937	4.25387842738733	4.31249145268302	4.30856890271259	4.01283897901382	4.22726704177964	-0.402460371601684	0.308807375970695	0.621149015576853
Merged-chr13-31228089-3	chr13	31227992	31228192	+	648.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045957, intron 1 of 2)	intron (NR_045957, intron 1 of 2)	12994.0	NR_045957	73924.0	Mm.417825	NR_045957	ENSMUSG00000087460	4930401O12Rik	-	RIKEN cDNA 4930401O12 gene	ncRNA	2.88965043279028	2.93242739139161	3.10705307970221	3.34693117104101	2.63249459249428	2.4975381682312	2.47186882444577	2.47606351975035	-3.20057037619462	0.000255688699991397	0.00444762120642415
Merged-chr17-69181421-4	chr17	69181322	69181522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	22066.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	8.21458218472225	8.51336647313454	8.30772814886912	8.39115640212919	8.33234581095287	8.1293291695164	8.21233494587795	8.11786833057673	-0.202601219707671	0.20664671863248	0.510642650514914
Merged-chr2-77282342-4	chr2	77282264	77282464	+	852.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1772.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	4.56620718678048	4.29738146826532	4.30633463574473	4.79560439446057	5.00396066874231	4.3341132205432	4.37966770268016	4.39644306037765	0.121092366602524	0.774953504434815	0.912134538607699
Merged-chr10-7937800-1	chr10	7937700	7937900	+	756.0	f0_balb.idr	intron (NM_138667, intron 1 of 6)	intron (NM_138667, intron 1 of 6)	15265.0	NM_001359534	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	3.79244800773352	3.41556035034849	3.88083501045638	3.80446804292768	3.55195969916375	3.41289131548053	3.52839981736219	3.22997246907226	-0.957054162438903	0.0689030693087127	0.280525139905945
Merged-chr2-5529020-3	chr2	5528913	5529113	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290375, intron 2 of 10)	intron (NM_001290375, intron 2 of 10)	147033.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	3.53816042876398	3.57096864538764	3.90789998614821	3.78457479486635	3.43050951316893	4.0761725434351	3.69474430689903	3.90545159721906	0.236675288841043	0.637221281250497	0.8466981571082
Merged-chr7-118482615-4	chr7	118482541	118482741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9334.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	6.77330503980689	6.55235338192171	6.52549271135632	6.95231655007178	6.129646333453	6.32940140938962	6.20323266771456	6.32870498970317	-0.709445852879952	0.00189292594818227	0.0223926501687993
Merged-chr11-116024406-7	chr11	116024310	116024510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008211)	promoter-TSS (NM_008211)	94.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	7.95188198679735	8.60783881872156	7.90997248118796	7.16759907211387	8.26773509082182	8.42067388480843	8.0862885131586	7.85226163086233	0.212841013281424	0.444990275751764	0.731179455613815
Merged-chr5-122145925-4	chr5	122145848	122146048	+	990.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-7886.0	NM_183307	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	5.27345253201325	4.77184246746681	4.63720811305582	4.99805985245428	5.16412062461442	4.9045605454001	5.24786197110731	5.18436725114909	0.364419872328248	0.275301400403611	0.58708236946753
Merged-chr3-51328667-4	chr3	51328565	51328765	+	908.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	intron (NM_023502, intron 1 of 9)	11979.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	3.9469445118679	3.6507507448139	4.23034919887546	4.23517535050014	4.12595061474612	3.95950062595358	4.36798923099043	4.22764783183672	0.337742989972674	0.455087989029768	0.738746012503745
Merged-chr8-80880535-4	chr8	80880424	80880624	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301298)	promoter-TSS (NM_001301298)	-5.0	NM_001301298	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	5.32827240998012	5.26390073086127	4.96044449066107	5.01603490325971	4.75428325574913	4.7736062949231	5.10211745302247	4.99226254117853	-0.459747370367211	0.159751124950807	0.447447858467163
Merged-chr7-97029329-4	chr7	97029232	97029432	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153591, intron 7 of 13)	intron (NM_153591, intron 7 of 13)	-52419.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	5.47076142799695	5.31406453232532	5.73898577785391	5.49508666208007	5.20910948537288	5.44186205204671	5.38918892849258	4.93898166132163	-0.453479168247918	0.13181456204111	0.404210211448674
Merged-chr13-119791430-2	chr13	119791341	119791541	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_028245)	promoter-TSS (NM_028245)	-319.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	5.83025986591606	5.57750918745435	5.76181099762878	5.66283898623651	5.70795881048821	5.81158498957464	5.4706414954009	5.68425164562836	-0.0512137414928112	0.844411300485259	0.940997791825032
Merged-chr16-38432959-7	chr16	38432831	38433031	+	967.5238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134102, exon 1 of 11)	5' UTR (NM_134102, exon 1 of 11)	214.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	4.22205299962538	4.13433115880522	4.55059169874178	4.18776489823562	4.21587180010911	4.1456530952264	4.37694474992668	4.51097577892194	0.103087745479914	0.796566779657644	0.921248529976191
Merged-chr7-80341081-4	chr7	80341011	80341211	+	951.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133952)	promoter-TSS (NM_133952)	-892.0	NM_133952	101869.0	Mm.243024	NM_133952	ENSMUSG00000030533	Unc45a	AW538196	unc-45 myosin chaperone A	protein-coding	4.00212963005091	4.05611751196549	3.95090119885649	3.8513585806656	4.08249536513405	4.40384713240734	4.25645565927477	4.18880852551689	0.709304325421299	0.0817785152913554	0.310376032120656
Merged-chr14-57798171-4	chr14	57798086	57798286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142441)	promoter-TSS (NM_001142441)	-3.0	NM_009119	20220.0	Mm.30173	NM_009119	ENSMUSG00000021963	Sap18	C530046K05Rik|D11Ertd539e|EMegR4|Sap18a|Sinbp1	Sin3-associated polypeptide 18	protein-coding	7.89728389483404	8.03453309907596	7.65962074965254	7.49242215268223	8.16957485465987	8.18043835738966	8.11475811379081	7.81860843201102	0.386805491521316	0.046959717556199	0.222844310631453
Merged-chr12-101082930-4	chr12	101082820	101083020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_038047, exon 1 of 4)	non-coding (NR_038047, exon 1 of 4)	469.0	NR_038049	319760.0	Mm.440198	NM_176997	ENSMUSG00000097121	D130020L05Rik	9430007L23Rik	RIKEN cDNA D130020L05 gene	ncRNA	5.17898123527458	5.75566604188718	5.70903625697648	5.13661865465774	5.65444934906215	4.92023689807922	5.22123498027431	5.65866656196992	-0.1084184335273	0.757332592430467	0.904677695365828
Merged-chr17-80062922-1	chr17	80062822	80063022	+	725.0	f0_balb.idr	promoter-TSS (NM_144802)	promoter-TSS (NM_144802)	-654.0	NM_144802	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	3.59589875940715	3.21167611994877	3.24866930208249	3.82740056657571	3.53232411561937	3.60563850448608	3.47701070170013	3.54256628873238	0.0875137749965821	0.873589016534084	0.952632675193105
Merged-chr6-72990400-3	chr6	72990292	72990492	+	899.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31644.0	NM_001190327	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	3.61338781473185	3.64271319031917	4.06660508110251	3.76598271331423	4.06348613161347	4.00611868220123	3.81897633312449	3.78086836654085	0.413306079685659	0.367738477437166	0.672263639960449
Merged-chr4-114652589-4	chr4	114652495	114652695	+	976.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-169125.0	NR_033617	433746.0	Mm.388908	NR_033617	ENSMUSG00000055198	Gm12830	-	predicted gene 12830	ncRNA	4.61803494961783	4.59935505782428	4.6598832928828	4.54931690461583	4.79484011115706	5.01893668894489	5.01636272209017	4.69665395630885	0.592118452290808	0.0768615091298397	0.299711041873171
Merged-chr3-142295428-3	chr3	142295336	142295536	+	615.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190852, intron 7 of 15)	intron (NM_001190852, intron 7 of 15)	96414.0	NM_022554	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	3.06268420211279	3.04147656468067	3.53659275143006	3.34771987493727	3.28069182025831	3.49351989673113	3.56925447293303	3.48394050755349	0.6647912808454	0.231547535789552	0.54111200698099
Merged-chr2-90517307-3	chr2	90517209	90517409	+	740.688904	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-38135.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.05935598088345	4.31695089844911	4.10597288457434	3.9600088823703	3.86521363945252	3.97878993841165	3.99523220850168	4.0098579853738	-0.408324830858187	0.338000404618483	0.647718939249696
Merged-chr15-66577976-3	chr15	66577866	66578066	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081409, intron 1 of 20)	CpG	394.0	NM_001081409	239510.0	Mm.267473	NM_178718	ENSMUSG00000072501	Phf20l1	CGI-72|E130113K22Rik	PHD finger protein 20-like 1	protein-coding	5.61319298248754	5.69402303874598	5.9377966514024	5.47775845563751	5.56682286571218	5.49753630981824	5.44767992051654	5.84937967905809	-0.132626844267871	0.636559002401538	0.846292109152937
Merged-chr4-132040306-5	chr4	132040176	132040376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	8802.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	6.38101319717462	6.23248808249001	6.44886648206182	6.37325480322894	6.01067656794005	6.37381085396886	5.90402659391948	6.28889207766139	-0.318674406411807	0.17787472406055	0.473536484418816
Merged-chr1-138244640-4	chr1	138244514	138244714	+	901.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29124.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	4.5430271643695	4.54268010101596	4.82186305610386	5.04529745757323	4.88750063048437	4.67599443929889	4.76299343955443	4.81864721121677	0.0341996643006934	0.92414527343561	0.971922030555652
Merged-chr12-9030999-4	chr12	9030905	9031105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029321, intron 1 of 2)	intron (NM_029321, intron 1 of 2)	1008.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	5.79328982277529	5.718322396602	6.18096498728197	6.1802362847533	5.87917696530164	5.6948514698292	6.25489936566346	5.88686399292414	-0.0780112397867078	0.776333577002909	0.912883229985628
Merged-chr17-10392588-1	chr17	10392488	10392688	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-63628.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	6.10473292327034	5.92346321115194	6.12516770780798	5.89418618789686	5.7677839929774	5.84215965561897	6.07467632460395	5.88859008868815	-0.178398881477984	0.469469965476495	0.748378822236993
Merged-chr17-29394605-1	chr17	29394505	29394705	+	1000.0	f1_balb.idr	Intergenic	Intergenic	33691.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	5.27241013047029	5.37398201092502	4.7066286507027	4.76930235822378	5.71846101868867	5.41753239369521	5.30632953879158	5.49331713364316	0.807114226861479	0.0151134380445276	0.105414934499895
Merged-chr9-120492610-4	chr9	120492516	120492716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026892)	promoter-TSS (NM_026892)	10.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	5.73666093689488	5.83485199804349	5.62615211118295	5.97403377961875	6.26763688396112	6.19889432720894	6.43459964097776	5.95368931700275	0.642269066429989	0.0114324647749325	0.086837200962002
Merged-chr3-27198786-4	chr3	27198690	27198890	+	950.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	15786.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	4.90091392214155	4.52121999773024	4.2545999290324	4.43163833101442	4.7406429588809	4.33112562179213	4.42900594635854	5.18034882162539	0.369513384831305	0.376860383345908	0.679494401442451
Merged-chr3-65959102-2	chr3	65959002	65959202	+	665.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355432)	promoter-TSS (NM_001355432)	-853.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	3.25744380545327	2.9758717740931	3.14229030858221	2.54732562569373	3.23841681455491	3.37428874282121	3.06911617145136	3.31007590057899	0.962896679063603	0.138108929023365	0.413489163530117
Merged-chr10-63347354-4	chr10	63347265	63347465	+	906.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-8330.0	NM_001159589	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	4.52404633080033	4.03607493267927	4.06416889402522	4.15589249570875	4.27239580865815	4.08262532257162	4.04725316453275	4.37322915676905	-0.000767354893537482	0.998535225652205	0.999362830169424
Merged-chr9-57073124-3	chr9	57073022	57073222	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110351, intron 1 of 21)	CpG	1082.0	NM_001110351	20466.0	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	7.1305067136545	7.1980866070878	6.81018184030656	6.86707262312831	6.97164585766855	7.05857831298092	7.23482260257157	7.05677713087656	0.102322810468303	0.612088495576249	0.832680684364583
Merged-chr9-59486762-4	chr9	59486661	59486861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019927)	promoter-TSS (NM_019927)	-387.0	NM_019927	23806.0	Mm.305925	NM_019927	ENSMUSG00000025234	Arih1	AU021774|Ari|Ari1|Hari|Hhari|Ubch7bp|Uip77	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding	8.43213979701334	8.67926252397299	8.27543563816849	8.2638936673877	8.47343863451046	8.61106839004626	8.49741029275362	8.2872986294589	0.0632395733920201	0.714183888872706	0.885697313573214
Merged-chr17-8988308-4	chr17	8988234	8988434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347544)	promoter-TSS (NM_001347544)	1.0	NM_001347544	66931.0	Mm.67591	NM_025851	ENSMUSG00000023873	1700010I14Rik	-	RIKEN cDNA 1700010I14 gene	protein-coding	5.6922097266383	5.61580070755641	5.2966818831467	5.51458870813107	5.73539315476688	5.62853367883117	5.71172637045366	5.47808978135287	0.185998697284507	0.491086871379281	0.762744881249582
Merged-chr1-189867164-3	chr1	189867054	189867254	+	718.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008976, intron 18 of 18)	intron (NM_008976, intron 18 of 18)	55137.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	3.16681686173429	3.13725008296473	3.21960774600867	2.99997354181554	2.90202625853137	2.75362469563124	2.85879918753932	2.99437072644556	-1.07536509308517	0.0798403106145424	0.30601224862595
Merged-chr11-6497848-3	chr11	6497749	6497949	+	775.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21773.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	2.45624428125253	2.32129899158242	2.45647232911683	2.05750564567886	3.30394951133926	2.86940985994371	3.27894487298513	2.8175662118601	5.69531614010799	6.69169436143849e-09	3.69804435522384e-07
Merged-chr6-8687374-4	chr6	8687261	8687461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252266, intron 5 of 11)	intron (NM_001252266, intron 5 of 11)	71097.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	7.67407044722006	7.68798884584522	7.87048598502489	8.05815633213074	7.80672645199618	7.91054732551431	7.78095513275145	7.38710411958397	-0.13482585779166	0.490862110205177	0.762545540982874
Merged-chr9-90198075-4	chr9	90197953	90198153	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003911, intron 23 of 23)	intron (NM_001003911, intron 23 of 23)	35075.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	4.23105734219475	4.76356542034087	4.84403715944413	4.27672773430489	4.50987356758358	4.41236350283083	4.82011759654543	4.59092645904043	0.0942960717978119	0.81297378671788	0.927731304883839
Merged-chr6-57703298-4	chr6	57703205	57703405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133737, intron 1 of 8)	CpG	850.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	7.62350229987785	7.29412614474678	7.69982153655917	7.77063665637169	7.30662522146338	7.80215576417106	8.02377677302776	7.56694714319978	0.111136859796753	0.611578014251412	0.832381272376602
Merged-chr12-85588781-3	chr12	85588686	85588886	+	839.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10319.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	3.90717206856337	3.78192606805989	3.40014727048515	3.77118324085992	3.46339529377839	3.74497123626993	3.44859376786218	3.45896389735819	-0.643761746014194	0.203698217894186	0.506693533164083
Merged-chr1-155146845-4	chr1	155146740	155146940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355062)	promoter-TSS (NM_001355062)	-26.0	NM_008209	15064.0	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	5.91352933785702	5.97766199986157	5.79266766184893	5.7925791319825	6.09885204652468	6.2422624287033	6.03660014912188	6.21794311858341	0.443098031408276	0.0596919690510032	0.257597590947093
Merged-chr7-67227361-9	chr7	67227276	67227476	+	786.037048	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175215, exon 3 of 3)	3' UTR (NM_175215, exon 3 of 3)	4760.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	3.34878721394237	3.23452347853273	3.61091069414718	3.27679520296677	3.53399380889903	3.27374864621346	3.27818342691051	3.56058126439966	0.188960305446773	0.721343206643354	0.888753092785481
Merged-chr14-31413912-4	chr14	31413812	31414012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	MLT1K|LTR|ERVL-MaLR	3765.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	6.80193030725954	6.82995414474882	6.9845051603364	7.16622735297724	6.43848266811654	6.57373649298244	6.66737368126831	6.77010855400997	-0.501925421280602	0.0188755838452603	0.123057811185362
Merged-chr15-54921142-3	chr15	54921036	54921236	+	863.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136077)	promoter-TSS (NM_001136077)	-990.0	NM_001285994	18606.0	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	3.43495499889446	3.30873639034289	3.26602880897396	3.29348262129921	3.37527183588982	3.43757361152459	3.47267149823476	3.26443144555454	0.230376227854387	0.652241802515866	0.854485740655172
Merged-chr1-43506885-4	chr1	43506771	43506971	+	867.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	61120.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	4.47654845275404	4.3669087858881	4.51980659363523	5.07359918315452	4.36162342009572	4.69302098865748	4.53995933052589	4.51692430161138	-0.300933441374403	0.456448539432412	0.739895483779911
Merged-chr1-155982929-3	chr1	155982848	155983048	+	886.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie10a|DNA|hAT-Charlie	-9693.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	3.2938550539959	3.17222578638867	3.02021167407982	2.54706673475667	3.52556683215568	3.84337536237442	3.21825214451553	3.92281305804602	2.20547860681588	0.00087824042153182	0.0121288853248377
Merged-chr5-130029333-4	chr5	130029217	130029417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007761)	promoter-TSS (NM_007761)	11.0	NM_007761	12909.0	Mm.18072	NM_007761	ENSMUSG00000025532	Crcp	AL022669	calcitonin gene-related peptide-receptor component protein	protein-coding	6.72597169804652	6.53096186635202	6.69730420595498	6.88015298224839	6.92609205699246	6.85863576976	6.73622289042033	6.76582923774225	0.145052280783898	0.480470937442336	0.755982465057009
Merged-chr3-88738819-4	chr3	88738735	88738935	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	21981.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	5.34545674331816	5.24437097002688	4.88353745282529	5.16811753780649	5.25725370926974	5.27687234968513	5.04421419304123	5.13237336270089	0.021249159696102	0.944479642602262	0.980072204069348
Merged-chr5-124095973-4	chr5	124095879	124096079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019875)	promoter-TSS (NM_019875)	-181.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	8.04111849723614	8.37665878937633	7.90324186246415	7.56661368920883	8.26299131969402	8.31521385470023	7.92257770815509	7.8905406309058	0.145738721775535	0.50758715601559	0.772890646858205
Merged-chr18-67324521-4	chr18	67324419	67324619	+	959.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033214, exon 2 of 4)	non-coding (NR_033214, exon 2 of 4)	-19045.0	NM_007702	12683.0	Mm.449	NM_007702	ENSMUSG00000024526	Cidea	AW212747	cell death-inducing DNA fragmentation factor, alpha subunit-like effector A	protein-coding	5.28762099987894	4.93249900558154	4.75633069387141	5.35013905144149	5.31094276686364	5.27559641216022	5.31845022872235	5.09774921437622	0.247227356948534	0.447231722179522	0.732832402979263
Merged-chr1-165642017-4	chr1	165641897	165642097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7456.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	4.76724246218788	4.96771170412905	4.72956254336508	4.63845534333574	4.85553393623349	4.90324898494995	4.92048010199289	4.60390538330667	0.1116962891738	0.740754637764824	0.898040260084917
Merged-chr4-34466037-4	chr4	34465933	34466133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-84582.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	5.89889935719785	6.09046100190962	5.94580911596604	6.54200428134532	5.47393465966358	5.87652987652535	6.2815869997191	5.66629825928369	-0.483901183507044	0.114713116734658	0.374669156887817
Merged-chr4-89381932-4	chr4	89381846	89382046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-70914.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	5.88336872208279	6.20859047063751	6.05595887472405	6.43294708595253	5.55804851292198	5.56674990879107	5.54575137809898	5.73440946695197	-0.933678692581018	0.000443578300153638	0.00699408508909049
Merged-chr7-4996148-4	chr7	4996052	4996252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026741)	promoter-TSS (NM_026741)	-51.0	NM_026741	68490.0	Mm.76400	NM_026741	ENSMUSG00000051550	Zfp579	1110003A17Rik|Znf579	zinc finger protein 579	protein-coding	5.51906742875581	5.58618534822344	5.11821243347068	5.36015798780396	5.14552970792321	5.69307162221614	5.41065783897428	5.54233503016762	0.0774810661600801	0.797941863819385	0.921904686482275
Merged-chr8-111821319-4	chr8	111821207	111821407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011801, intron 5 of 6)	(A)n|Simple_repeat|Simple_repeat	33003.0	NM_011801	23837.0	Mm.279437	NM_011801	ENSMUSG00000031954	Cfdp1	AA408409|Bcnt|Bucentaur|Cfdp|cp27	craniofacial development protein 1	protein-coding	6.60706890582623	7.19506742139342	6.90411490889207	6.61148587347333	6.97667769513061	7.04055466352572	6.71567560384208	7.05973592996238	0.15005000745965	0.511335828553306	0.775335536390107
Merged-chr3-130873963-4	chr3	130873887	130874087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143589.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	7.47089420239324	7.54213468811223	7.50082339406865	7.86501404445163	7.70600744355994	7.57947694502393	7.79405424018059	7.69658095984598	0.103130491852996	0.576544564134394	0.813565392540383
Merged-chr5-122392278-4	chr5	122392210	122392410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 1 of 6)	intron (NM_019824, intron 1 of 6)	432.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	5.30313772056267	5.49336522020516	5.36467222519765	5.01435102703865	5.44437555421535	5.5094421600659	5.4503041279968	5.52695754774276	0.344535027332472	0.236520845183242	0.546577661329488
Merged-chr12-73359725-3	chr12	73359620	73359820	+	973.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49843.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	3.82967882587746	3.75060369955519	4.11950314932241	3.87883837672041	4.85186108099774	4.25007845816417	5.07002263902995	4.59329123270009	1.96698699959434	3.82378528208173e-06	0.000117013418999697
Merged-chr15-75923453-4	chr15	75923360	75923560	+	925.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-1900.0	NM_025412	66194.0	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding	4.52761431611505	4.29476215781391	3.79551728556718	4.24187139094378	4.25112725541955	4.45545325066919	4.43063669829656	4.52533657608538	0.414423353402112	0.319426478284898	0.631272275763354
Merged-chr4-100548145-4	chr4	100548024	100548224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033773, intron 9 of 9)	intron (NM_001033773, intron 9 of 9)	69257.0	NM_001033773	381534.0	Mm.318133	NM_001033773	ENSMUSG00000069733	Ube2u	-	ubiquitin-conjugating enzyme E2U (putative)	protein-coding	6.18286987019193	5.98430196303213	6.20425041496093	6.61110601375265	6.289937018319	6.36067232490697	6.62179852407091	6.35123632882221	0.182570332607534	0.472046081512165	0.750299901668082
Merged-chr4-128635724-2	chr4	128635624	128635824	+	954.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17105.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	3.73839419093488	3.5004603154147	3.37067039933686	3.26395112613782	3.68423284660056	3.6031067116412	3.35866233228859	3.48516869686321	0.239944473390331	0.643401107647963	0.849638332939833
Merged-chr13-99028737-3	chr13	99028638	99028838	+	733.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-44173.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	3.83873694829775	3.98607894730354	4.31647822302261	4.17461720213785	4.00424951393202	3.6630046919947	3.77075605126241	3.66908469543396	-0.834484691161798	0.0754564258871477	0.296620806219765
Merged-chr7-45529708-4	chr7	45529611	45529811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148927, intron 1 of 19)	intron (NM_148927, intron 1 of 19)	3381.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	5.61214922106918	5.8797444419675	5.30849648462016	4.68796084045265	5.39562142623024	5.57445331419323	5.34265166130268	5.39528700001573	-0.0162213548168881	0.964513804890137	0.987424880903373
Merged-chr4-8863930-3	chr4	8863844	8864044	+	661.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001277149, exon 36 of 38)	exon (NM_001277149, exon 36 of 38)	112620.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	3.05067451657327	3.019077008835	2.82610842997205	2.96660250588663	3.79933859442695	3.2983143808794	3.34571522743223	3.69420882277737	2.1646165378122	0.000209293516806487	0.00378104142963679
Merged-chr19-32757510-4	chr19	32757422	32757622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008960)	promoter-TSS (NM_008960)	-55.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	8.37217362643674	8.33707787745339	8.27559917349708	8.12906895366405	8.32846610995538	8.40717332367248	8.22537936292645	7.99252862487153	-0.0358765112909146	0.831575947942937	0.935511441238962
Merged-chr11-94692681-4	chr11	94692545	94692745	+	767.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	11854.0	NM_001007584	432589.0	Mm.342314	NM_001007584	ENSMUSG00000056008	Gm11541	-	predicted gene 11541	protein-coding	3.96163938814836	4.22792210715188	4.06057904185961	3.62629952302109	3.91874550375723	4.13684940090533	4.08878730458206	4.2749698637757	0.348359715123904	0.440320123203359	0.727741310566664
Merged-chr14-105397665-4	chr14	105397557	105397757	+	956.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29902.0	NR_045859	71362.0	Mm.410781	NR_045859	ENSMUSG00000115548	5430440P10Rik	-	RIKEN cDNA 5430440P10 gene	ncRNA	4.13131308397647	4.18774784048907	4.13188034639746	4.4775125646994	4.66814488643788	4.20263766885168	4.67919529548551	4.56186067181071	0.674437881200628	0.0960539272719809	0.339609700441701
Merged-chr2-168553835-3	chr2	168553752	168553952	+	903.9110720000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	36513.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	3.66576706162499	4.21106991276586	4.21985883429237	4.46217619656813	3.82274137656936	3.84725889568772	3.93091265543034	3.94498594643316	-0.804647173565422	0.0866966920753571	0.321209032577518
Merged-chr2-84529350-4	chr2	84529241	84529441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22468.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	5.62586846113792	5.55641583613707	5.19694812489688	4.91267785602412	5.21038444559645	5.09082259480082	5.10615768862197	5.12772058028639	-0.373060704261467	0.2636576307761	0.575777336350618
Merged-chr1-131439238-1	chr1	131439138	131439338	+	571.0	f0_balb.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	88123.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	3.39046079565461	3.34658176077647	3.28407905439066	3.17923354317423	3.06056291975833	3.00626607467752	3.15626870220835	3.38895514291061	-0.526483076089143	0.348792001889929	0.656478715798452
Merged-chr3-107781479-4	chr3	107781356	107781556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20987.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	6.03630430269139	6.05760086881996	6.05878143663392	6.18991367213843	5.92881817131426	5.92621877665724	6.37575781126681	6.19482750815806	0.0325461909111028	0.894207288285665	0.960481560907683
Merged-chr11-22841565-2	chr11	22841465	22841665	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	18170.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	2.99383301685174	2.94907283326314	3.10932758520481	3.12252657946802	2.90221838921502	2.97352614393967	3.09720430975313	2.86664493572274	-0.379112515585509	0.519100202865519	0.77984451962357
Merged-chr7-75656650-4	chr7	75656525	75656725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	L1M4|LINE|L1	-191713.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	6.94060091453013	7.26162067321085	7.0260473864157	6.78298183983859	6.60509172997168	6.81013164904582	6.4652661431794	6.17398876174133	-0.674470707295301	0.00415355481910572	0.0412970915587549
Merged-chr8-24437930-4	chr8	24437825	24438025	+	906.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026931, exon 1 of 1)	3' UTR (NM_026931, exon 1 of 1)	1021.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	4.46193009372658	4.23492163047325	4.25619808848099	4.31388220858379	4.27316942399343	4.28864202483739	4.19237506906704	4.16078311852529	-0.212498555215672	0.581725564213025	0.816420227529328
Merged-chr10-94844945-3	chr10	94844847	94845047	+	568.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 12 of 30)	intron (NM_018797, intron 12 of 30)	99631.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	3.56739324143427	3.56867044528874	3.39639731658818	3.38954724801184	3.49641690800579	3.23986491198806	3.70288622774736	3.93419049905334	0.443389393232885	0.396581497507519	0.695284556331027
Merged-chr12-119113990-4	chr12	119113910	119114110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124266.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	5.67842303196042	5.57823042855159	5.47657037463608	6.10837959572908	6.17559657748054	6.18198390412596	5.82464569953837	5.82676142096356	0.413412519330389	0.154218037560254	0.439434975800693
Merged-chr7-118518860-4	chr7	118518724	118518924	+	940.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304758, intron 5 of 6)	intron (NM_001304758, intron 5 of 6)	14532.0	NM_001304758	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	4.81222506451525	4.8038838194122	4.62610443952354	4.91323147200505	4.63477237299389	4.58483412837642	4.68214737671262	4.40455610787973	-0.469954442789099	0.177244067148096	0.472511440282183
Merged-chr6-97343148-4	chr6	97343059	97343259	+	871.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 8 of 23)	intron (NM_145148, intron 8 of 23)	-90379.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	4.45824743905509	3.81456528858017	3.86934567464979	4.16180506019989	3.49595944153982	3.7570362119042	4.09385447644039	4.153466660606	-0.545941772688204	0.277298131352265	0.589469707667031
Merged-chr2-167230319-3	chr2	167230212	167230412	+	875.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008968, intron 1 of 9)	L1MB5|LINE|L1	10225.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	3.93698763488772	3.60156195120128	3.84025206495665	4.15074970582432	3.78285424549163	3.9082142129412	3.66518360878902	3.93519615129698	-0.245335753433816	0.603142246385844	0.827969797216987
Merged-chr9-105759118-3	chr9	105759011	105759211	+	833.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102607, intron 13 of 36)	intron (NM_001102607, intron 13 of 36)	50537.0	NM_172927	245026.0	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	5.00827013968129	4.80442132894498	5.03499372047937	4.82978214068483	3.21887819117467	3.49340145712243	3.51219305389672	3.5228094197985	-5.71588842681192	1.4454173995173e-10	1.07844198197319e-08
Merged-chr7-101840125-4	chr7	101840028	101840228	+	994.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001303239, exon 6 of 6)	3' UTR (NM_001303239, exon 6 of 6)	-1902.0	NM_010567	16332.0	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	5.28730027375303	5.10124890295943	5.31817927853806	5.393800966783	5.33634072078102	4.91146992571711	5.43070839065376	5.53133565112159	0.073448061537814	0.810989353310019	0.926854276252049
Merged-chr9-65561598-2	chr9	65561498	65561698	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 3 of 5)	intron (NM_153119, intron 3 of 5)	18489.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	2.95776772208361	3.03812157664759	3.36281729814303	2.95724257785645	3.1201779525775	3.25910157239492	3.07611122540078	3.20285120838724	0.325712448794102	0.568703125053109	0.808947236973526
Merged-chr4-99478766-4	chr4	99478652	99478852	+	990.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177547.0	NM_010425	15221.0	Mm.4758	NM_010425	ENSMUSG00000067261	Foxd3	CWH3|Genesis|Hfh2	forkhead box D3	protein-coding	5.17964042322078	5.51855351156998	5.88603147122498	6.39420564071151	5.84508286628508	5.70112693723671	6.15431221568215	5.88181612428768	0.0961062833148826	0.781406744982811	0.914880915186053
Merged-chr14-70371063-1	chr14	70370963	70371163	+	586.0	f0_balb.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-19639.0	NM_001135151	213053.0	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	3.84969631573677	3.51792655549136	3.25712812413576	3.33475415391875	3.32787624518011	3.92847892529108	3.54576638721266	3.44533175844179	0.233443015633533	0.669741146586066	0.863615758960093
Merged-chr13-81264729-5	chr13	81264636	81264836	+	975.5200199999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	L1PB4|LINE|L1	300662.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	4.02737757523259	3.52331337409325	4.43259348821135	4.29011765869721	3.57616466662067	4.10405003919936	3.96227659981017	3.97702575427967	-0.529197807952028	0.301614455733105	0.61373971825691
Merged-chr16-45024111-4	chr16	45024003	45024203	+	955.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69908.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	4.61581833354017	5.13469813241869	4.52141819917487	4.93166510374929	4.97722948357157	5.24896081792659	5.20177263799879	5.25256912353688	0.640282437620471	0.0625852927695738	0.265018907447998
Merged-chr17-72967142-4	chr17	72967043	72967243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48838.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	6.14932523916418	6.03687936319424	6.00063509935422	6.49142921740273	6.40139170467207	6.05965833551278	6.26998834531276	5.99636462479887	-0.00457427151018793	0.985854666048599	0.994788540667462
Merged-chr4-42978267-3	chr4	42978160	42978360	+	623.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	8314.0	NM_026088	67317.0	Mm.478018	NM_026088	ENSMUSG00000028451	1700022I11Rik	-	RIKEN cDNA 1700022I11 gene	protein-coding	3.62320787976508	3.51146562463114	3.24984421774885	2.94169343188837	3.66937648339619	3.30007241391198	3.04132270935965	3.36629014511899	0.0446559356213272	0.941886196742636	0.978994726943092
Merged-chr15-78898978-4	chr15	78898782	78898982	+	902.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316686)	promoter-TSS (NM_001316686)	-886.0	NR_133564	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	3.88859433084866	3.9746630049175	3.58952816020484	3.26646145590197	3.53541189085503	3.65030303027737	3.45948066969594	3.7945481782489	-0.273684620427535	0.608052302368398	0.83032239482552
Merged-chr7-24715242-4	chr7	24715153	24715353	+	913.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_199150)	TTS (NM_199150)	5994.0	NM_199150	232972.0	Mm.293074	NM_199150	ENSMUSG00000045587	BC049730	Lypd10	cDNA sequence BC049730	protein-coding	4.92910855282323	4.61145098446821	5.17576029831256	5.11578884144403	4.48909405509463	4.80173132949165	4.87185483332703	4.66386927403428	-0.563586759369916	0.113481067451544	0.372473895607002
Merged-chr13-23585556-2	chr13	23585456	23585656	+	784.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290530)	TTS (NM_001290530)	414.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	3.77446489075314	3.8765831232557	3.55022566259914	3.26851762353096	4.09380216144825	3.53954044925175	4.03345822520569	3.91890680986134	0.841795427025319	0.0998457130382992	0.346609234862679
Merged-chr4-136469092-3	chr4	136468997	136469197	+	846.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024452)	promoter-TSS (NM_024452)	-664.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	4.14067506577918	3.66583557426428	3.95927152427989	4.43596904880375	3.84467224727284	3.74597416408874	3.67499839139936	4.18030082262996	-0.587388122639251	0.238063207708903	0.548385147621749
Merged-chr14-75164549-4	chr14	75164472	75164672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	28147.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	6.84352365634663	6.97165405318924	6.60287037589649	6.79501823313032	6.99892894165397	7.02118951688074	7.03499847238459	6.69429860161607	0.188559641349495	0.358543925071058	0.664517589965703
Merged-chr19-18671230-3	chr19	18671115	18671315	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026120, intron 1 of 7)	CpG	435.0	NM_026120	67383.0	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	5.92667060710237	5.49944773014206	5.86294939918219	5.46255646242231	5.90720052110504	5.59396819341971	5.5908576719702	5.83642441050405	0.100307945018912	0.721091145801051	0.888617497696901
Merged-chr11-72689971-4	chr11	72689845	72690045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009671)	promoter-TSS (NM_009671)	-57.0	NM_009671	11736.0	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	6.74718079127396	6.37450685163276	6.43490037394218	5.98459368628947	6.7569630253663	6.95121416923932	6.71391873299808	6.51622375534089	0.504694205349374	0.0436998312187564	0.212811972798066
Merged-chr5-33275158-4	chr5	33275062	33275262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310535)	promoter-TSS (NM_001310535)	-158.0	NM_001198860	13016.0	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	7.20815655022416	7.37489633511355	7.2203660576396	7.22631272019987	6.97078999078123	7.17104806080532	7.09405035930335	7.31990674681571	-0.163992816496068	0.382608608054983	0.684637549504146
Merged-chr1-59916083-2	chr1	59915983	59916183	+	893.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037725, intron 1 of 7)	intron (NM_001037725, intron 1 of 7)	3077.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	3.20444511638051	3.17366099015242	3.20490802034428	2.87738065267096	2.81714440257815	3.26246011160319	2.82165205766189	3.0289934512813	-0.517874738201512	0.403524840561613	0.700922982752502
Merged-chr2-122244024-3	chr2	122243931	122244131	+	838.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146126, intron 1 of 8)	intron (NM_146126, intron 1 of 8)	9192.0	NM_146126	20322.0	Mm.371580	NM_146126	ENSMUSG00000027227	Sord	Sdh-1|Sdh1|Sodh-1	sorbitol dehydrogenase	protein-coding	3.49262468519085	3.60443377687523	3.65751196362339	3.19972348259062	3.64235395351455	3.6678221347546	3.69203467436953	3.75421587460558	0.652416828516188	0.189968334418161	0.489091927061078
Merged-chr15-31532206-4	chr15	31532109	31532309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-1172.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	5.6345384886065	5.06699624685276	5.24585526716972	5.57276526951465	5.44896135782883	5.25067420280741	5.58288457272097	5.39542468356069	0.0309748075782873	0.918658533503314	0.970079751894971
Merged-chr4-132555777-4	chr4	132555676	132555876	+	935.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8291.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	4.63694505357726	5.22554948360641	4.5510105575744	4.33473497035035	5.06481274564521	4.68494773925987	4.91159535443509	4.82875147494613	0.323641093837291	0.409563103699866	0.70518365162682
Merged-chr19-60581077-4	chr19	60581003	60581203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172096)	promoter-TSS (NM_001172096)	-80.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	7.99258606402716	7.94543893881128	8.06729136891857	7.71367799202608	8.36230308763669	8.2832175349688	8.24756968932486	7.85071988255886	0.353060752621921	0.0570416165829114	0.250277653919706
Merged-chr13-41466853-4	chr13	41466761	41466961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	20499.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	6.87413379864427	6.74698805523313	6.7145550325771	7.07934253745357	7.04776656567555	7.11878643657034	7.21556005180018	6.98822118871006	0.300344214004511	0.13791997708613	0.413089489531381
Merged-chr5-135196551-4	chr5	135196460	135196660	+	988.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011714, exon 2 of 19)	exon (NM_011714, exon 2 of 19)	9237.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	5.00009528523812	5.4320593961041	5.07371126047696	5.24678263370584	5.48606437898777	5.14110920863132	5.48935228045045	5.13912396056979	0.231275763519281	0.453780261620727	0.7376390379157
Merged-chr2-32381972-4	chr2	32381866	32382066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198001)	promoter-TSS (NM_198001)	-51.0	NM_198001	73737.0	Mm.27608	NM_198001	ENSMUSG00000039195	1110008P14Rik	C79326	RIKEN cDNA 1110008P14 gene	protein-coding	7.08114579386993	6.91420189421692	6.44986072574096	6.70888076375041	7.13131587006484	6.75200597077234	6.98913892778123	6.63541897900141	0.131089745329852	0.575490054085802	0.813044471433712
Merged-chr4-6222229-4	chr4	6222137	6222337	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31132.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	4.92284360348927	4.91893425835673	5.56505388183709	5.0803219496946	7.80498756578939	7.62050297874426	8.00752115010762	7.66192285227172	3.88823244247767	1.13936318141034e-49	1.2606292318237e-45
Merged-chr8-84953031-2	chr8	84952932	84953132	+	624.0	f0_c57.idr|f1_balb.idr	intron (NM_001357328, intron 5 of 6)	intron (NM_001357328, intron 5 of 6)	5042.0	NM_001357328	234542.0	Mm.461701	NM_144929	ENSMUSG00000048617	Rtbdn	A330096I21Rik|BC022744|Rtbnd	retbindin	protein-coding	2.91226876684162	3.02678645393198	3.05959996013493	2.87364258633793	3.42822117133397	3.59694672914715	3.46167870499865	3.74935499755003	2.24544602996255	4.33895382701826e-05	0.000999489949687162
Merged-chr11-54068936-2	chr11	54068836	54069036	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019417)	promoter-TSS (NM_019417)	81.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	4.181022720807	3.84926743529047	3.72047033587457	3.69441681944968	3.59140083519267	3.89547607169051	3.81106497749057	3.92305632795381	-0.178401657273298	0.705373852561229	0.881685774219734
Merged-chr10-80623178-3	chr10	80623062	80623262	+	914.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134002, intron 1 of 10)	intron (NM_134002, intron 1 of 10)	382.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	3.89889686415033	3.99454982798643	3.40569178305302	3.56759216041892	3.64862650948643	3.76676685758309	3.78862026103496	3.75256693522587	0.0120604413240273	0.980396839124812	0.99281244474172
Merged-chr11-30954410-4	chr11	30954310	30954510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025745)	promoter-TSS (NM_025745)	12.0	NM_023906	65257.0	Mm.440539	NM_023906	ENSMUSG00000020305	Asb3	2400011J03Rik|Asb-3	ankyrin repeat and SOCS box-containing 3	protein-coding	6.57723592848753	6.63709005864713	6.80693116087222	6.97893398575611	6.92220986468555	6.61549057685619	7.0783099751007	6.71565354727866	0.109710911353665	0.621046063425839	0.837652544835196
Merged-chr6-17307552-3	chr6	17307456	17307656	+	759.0888669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243064)	promoter-TSS (NM_001243064)	-84.0	NM_001243064	12389.0	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	3.92951751757306	3.97668668604261	4.44867563348368	3.99202862560561	3.63733488316738	3.64876649083987	4.00718468763289	3.65502557570115	-1.00486686969913	0.0356048905302879	0.187366590496478
Merged-chr7-123322611-4	chr7	123322519	123322719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 4 of 19)	intron (NM_001316713, intron 4 of 19)	47296.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	8.01725181759274	7.92439295122648	8.14127574556855	8.23887851637919	8.13030065611734	7.94951684479318	8.29028072851069	8.15419050046891	0.0594552783270273	0.726182595360558	0.891034932051019
Merged-chr12-57243826-3	chr12	57243728	57243928	+	777.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164370, intron 1 of 9)	ORR1B1|LTR|ERVL-MaLR	13403.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	3.80947120204489	3.57140465523683	3.81004164127183	3.56866795502923	3.55252739529742	3.83068082875889	3.59254396070556	3.60453998983246	-0.128219716656483	0.788382310920406	0.918102557328025
Merged-chr17-10722798-3	chr17	10722707	10722907	+	921.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	117384.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	4.10679327490534	4.23883015883899	4.39884788607726	4.40552221125341	3.87893612387577	3.91201222578049	4.0896147035813	3.84724285467926	-0.971144659434995	0.0216787433911927	0.135037304265485
Merged-chr11-78189027-10	chr11	78188799	78188999	+	900.511902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_033475, exon 1 of 10)	5' UTR (NM_033475, exon 1 of 10)	151.0	NM_033475	19376.0	Mm.275864	NM_033475	ENSMUSG00000002059	Rab34	AI326479|Narr|Rah|Rah1	RAB34, member RAS oncogene family	protein-coding	3.13601081737963	3.21807888606129	3.25069322282155	2.67550095409223	3.14151169032039	3.36577304976494	2.93475898168038	3.13474477742053	0.26017114282132	0.678458476694669	0.868112820688421
Merged-chr5-110174553-4	chr5	110174446	110174646	+	861.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040430, intron 1 of 2)	RLTR31D_MM|LTR|ERVK	1958.0	NR_040431	100504007.0	Mm.441495	NR_040430	ENSMUSG00000086247	Gm15787	-	predicted gene 15787	ncRNA	3.76334758923965	3.72254510795464	3.86871859063564	4.00111853788255	4.09254558322582	3.9890227268276	3.85283177268444	3.8664970809001	0.288568640743031	0.515260907259498	0.777456991517019
Merged-chr1-13427071-4	chr1	13427021	13427221	+	945.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-53038.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	4.21779635765517	4.43790875323244	4.21842549959493	4.12654161205494	4.38487941097177	4.39065834469151	4.24528676896986	4.26140637600719	0.186330065493681	0.630060424495546	0.842594099674372
Merged-chr2-122156192-5	chr2	122156229	122156429	+	952.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026251, intron 2 of 17)	intron (NM_026251, intron 2 of 17)	-4371.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	3.4557491155167	3.98348053462639	3.51538223694136	3.49955234432917	3.78615124456552	3.509035743754	3.38274506970919	3.82066037456271	0.0327279783468736	0.950127643409841	0.982204611275017
Merged-chr2-84528943-4	chr2	84528857	84529057	+	700.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22084.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	3.65910004482889	3.61518844789082	3.71077960858758	3.81354782208687	3.81331132877383	3.48103773264468	3.7441499491156	3.49132312805201	-0.181676547264811	0.707414713078307	0.882444677286559
Merged-chr15-58134588-3	chr15	58134501	58134701	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027435, intron 1 of 27)	CpG	481.0	NM_027435	70472.0	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	5.0709066075973	4.91064246568938	5.60295733998501	5.1269663902993	5.29500123462134	5.48035100082848	5.33800879230283	5.77785213548859	0.510442382917024	0.112467784489921	0.370789459574251
Merged-chr12-110933035-4	chr12	110932928	110933128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081057, exon 10 of 21)	exon (NM_001081057, exon 10 of 21)	43764.0	NM_001081057	104859.0	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	6.14607021691545	6.10143158351814	6.57831564237857	6.85029349539253	5.76677114423009	5.94721910458702	6.19489162832568	6.20296548661442	-0.663413840044834	0.0185008777561641	0.121550117944065
Merged-chr5-76779325-1	chr5	76779225	76779425	+	805.0	f0_balb.idr	Intergenic	Intergenic	-61274.0	NM_001163793	320827.0	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	2.86219504091257	2.7692020451043	3.13482588953097	3.07154792152449	2.84579526635612	2.61928457527609	2.58749543700456	2.79897593827117	-1.16049730565203	0.0872413377793454	0.322166079470611
Merged-chr7-129575954-4	chr7	129575826	129576026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15937.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	5.83663968438039	6.19327467987687	6.43764534724496	6.5714621630795	6.52386894110139	6.11774194380221	6.04687713407745	6.39969310343872	-0.0118126160351207	0.965197999160176	0.987705455701398
Merged-chr19-60755928-4	chr19	60755832	60756032	+	976.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178421)	promoter-TSS (NM_178421)	-55.0	NM_178421	332397.0	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos C2HC-type zinc finger 1	protein-coding	5.6221165041981	5.51860904638939	5.7695784297583	6.02638270941305	5.57696040637798	5.34143250948186	5.82847198058281	5.0807385067094	-0.455035594016957	0.143589975381128	0.42198034015215
Merged-chr7-19178930-4	chr7	19178855	19179055	+	885.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347582, intron 1 of 21)	intron (NM_001347582, intron 1 of 21)	-2215.0	NM_001162996	72205.0	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	4.14962466824005	4.589462119363	4.33131637211538	3.93896092486905	4.38776420242893	4.12011651872829	4.17967172891611	4.32855299061448	-0.00421136822088556	0.992115635549979	0.997004077690413
Merged-chr12-3691161-5	chr12	3691105	3691305	+	966.6333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 9 of 17)	RLTR10D2|LTR|ERVK	-115775.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	4.82318164823472	5.32766502256036	4.86276781964858	4.27878358836418	5.26933671915879	5.03979068625426	5.33491460925444	4.8971353188106	0.542164370340256	0.163143336106261	0.452706698401916
Merged-chr12-33156982-4	chr12	33156885	33157085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	MIRb|SINE|MIR	9299.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	5.64051960170963	5.66045398127723	5.40002849064339	5.53925218414579	5.0924599767435	5.20661305698792	5.70621402162402	5.48190865315053	-0.309247144781956	0.300559821441078	0.612477626586326
Merged-chr9-113741380-4	chr9	113741287	113741487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286599)	promoter-TSS (NM_001286599)	-86.0	NM_001286599	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	6.57059663841058	6.23047941294058	6.5717568529939	6.30252017953758	6.44781037806629	6.43179987804435	6.64223797608465	6.56706423783907	0.158157408598434	0.474432692428856	0.75165589989079
Merged-chr8-36247177-4	chr8	36247086	36247286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081150, intron 1 of 11)	intron (NM_001081150, intron 1 of 11)	2330.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	7.20994701446456	6.96757431970697	7.06041505829015	7.13034226865723	7.35436420324165	7.00929139927356	7.5323195162089	7.05544468177457	0.225990344550341	0.269551529613198	0.581238507864386
Merged-chr2-127086387-4	chr2	127086267	127086467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 4 of 7)	B2_Mm2|SINE|B2	15710.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	6.38852837853013	6.63925282284613	6.71788957047481	6.59359538981732	6.65091873628558	6.6569287926974	6.73992216975965	6.75568283863269	0.155797541368401	0.446523333342776	0.732177298348394
Merged-chr16-91545775-4	chr16	91545747	91545947	+	933.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1247.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	3.00051761908115	3.53395082176217	3.55077995186217	3.04618176626787	3.44215986584303	3.61739935022173	3.32116837374793	3.44485845963011	0.539964530264886	0.344154238500386	0.652638916532676
Merged-chr8-46627542-3	chr8	46627429	46627629	+	795.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284409, intron 1 of 6)	intron (NM_001284409, intron 1 of 6)	10238.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	3.80838275366812	3.69286781068809	3.38178287113066	3.92241082807181	3.34779314381144	3.55836230443726	3.64975766291845	3.44179672346322	-0.729297491355605	0.157506832131872	0.444059226672193
Merged-chr12-79298367-2	chr12	79298267	79298467	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252562, intron 1 of 7)	intron (NM_001252562, intron 1 of 7)	1016.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	4.07803724135292	4.2559678655208	4.02940126294736	4.10559153809919	4.43169054689964	3.93224903994792	4.15346373786447	4.12356552700966	0.165629195589245	0.6919340088114	0.87467626526963
Merged-chr12-79138120-4	chr12	79138018	79138218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	MLT1A1|LTR|ERVL-MaLR	7330.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	7.0096903109142	6.62601087827737	6.81817748430949	7.0758720758769	6.30512262176011	6.00202965332972	6.13528197924769	6.22628381964789	-1.05330317694758	4.58133786068365e-06	0.000137361014147263
Merged-chr5-21328752-3	chr5	21328656	21328856	+	880.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 4 of 18)	intron (NM_029195, intron 4 of 18)	-43917.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	3.55393200701346	3.32556381859066	3.13765266928988	3.45716747127354	3.57275938114373	3.4457506159914	3.43493824567895	3.65012992333033	0.495389365605725	0.338365931960879	0.647974082462358
Merged-chr1-36547323-4	chr1	36547220	36547420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132321)	promoter-TSS (NR_132321)	-68.0	NR_132321	109346.0	Mm.247537	NM_026241	ENSMUSG00000079610	Ankrd39	9130416N05Rik|C030004B10Rik	ankyrin repeat domain 39	protein-coding	7.69467764140499	8.04364595663586	7.53416939129075	7.86251836446831	7.90594907811762	8.00158406345731	8.14056280390504	7.67375678004178	0.178603443492817	0.356079488467496	0.662704502355483
Merged-chr5-135472616-4	chr5	135472515	135472715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	72507.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	7.64694226785244	7.59563849172442	7.48790307130477	7.62112603640759	7.65142042774404	7.62664964905074	7.69926445718821	7.42440897854875	0.0197478640380176	0.908004100824867	0.965948774106492
Merged-chr3-32508977-8	chr3	32508892	32509092	+	961.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1558.0	NM_001161818	67778.0	Mm.285620	NM_144519	ENSMUSG00000027667	Zfp639	6230400O18Rik|ANC-2H01|ZASC1|Znf639	zinc finger protein 639	protein-coding	3.91870215205458	4.0024894262639	4.14391183799774	3.50152888608462	4.00862746395833	3.82623420663548	3.95018477452762	3.81492113856023	0.0178719384128959	0.970064654379767	0.989220067829449
Merged-chr10-20828513-4	chr10	20828418	20828618	+	775.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-103440.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	4.50757609281087	4.40811815386559	4.01811392612354	4.39811541146238	4.38527721368893	4.24726128324061	4.15366055819843	4.16887621318371	-0.24593885542193	0.540785351194739	0.792982745230616
Merged-chr14-20848443-3	chr14	20848343	20848543	+	635.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11781.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	3.02563315460579	2.98820309936635	3.25889966684421	3.12287374803303	3.05662414813935	3.13502650748773	3.19194413987955	3.20274075356844	0.165695519624707	0.766136365229101	0.908503528989431
Merged-chr1-135430521-4	chr1	135430412	135430612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153774)	promoter-TSS (NM_153774)	-13.0	NM_001357578	226432.0	Mm.271642	NM_153774	ENSMUSG00000041879	Ipo9	0710008K06Rik|AI845704|C78347|Imp9|Ranbp9	importin 9	protein-coding	7.03335678667776	6.94466938835918	6.50968741183346	6.80922281938511	6.9131397499598	6.94725859005558	6.95067400520995	7.14336556371164	0.210414919806108	0.312967823229452	0.624873399429149
Merged-chr7-4792862-4	chr7	4792735	4792935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009081)	promoter-TSS (NM_009081)	-130.0	NM_009081	19943.0	Mm.379002	NM_009081	ENSMUSG00000030432	Rpl28	D7Wsu21e	ribosomal protein L28	protein-coding	7.54657866032739	7.66819255674225	7.37243861781035	7.26505930912828	7.76377555295967	7.85454071726164	7.85680917913071	7.560718541693	0.393877210075466	0.0345147848022633	0.183804269597508
Merged-chr16-21412804-4	chr16	21412709	21412909	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10309.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	5.22004607401792	5.27334609791105	5.06280096921263	4.84862782288322	5.28987977387365	4.85363016310113	5.10330080051898	5.05936413889162	-0.00261580155097164	0.993589004574747	0.997702270136287
Merged-chr13-99791030-3	chr13	99790933	99791133	+	924.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	109650.0	NM_013732	27220.0	Mm.75498	NM_013732	ENSMUSG00000021647	Cartpt	Cart	CART prepropeptide	protein-coding	4.62413152420421	4.27633827737896	4.94568558411992	4.22246846027714	4.06564570799646	4.21670796729514	4.17647803590412	4.75996186414307	-0.484159425281437	0.280362624309609	0.592346638474506
Merged-chr2-75776745-3	chr2	75776642	75776842	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55435.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	4.33245650268884	3.76630485427302	4.01712094682301	3.91575930528073	4.07135082055122	4.54074331439603	4.27249215400661	4.06483746868848	0.587862082255508	0.179709382994264	0.475928644273867
Merged-chr7-109986390-4	chr7	109986255	109986455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153525)	promoter-TSS (NM_153525)	-125.0	NM_153525	233724.0	Mm.43212	NM_153525	ENSMUSG00000047554	Tmem41b	1500015G02Rik|1500031M19Rik|AU018901|D7Ertd70e|D7Ertd743e	transmembrane protein 41B	protein-coding	8.3663730866134	8.3068309197015	8.20987108142742	8.04857728079788	8.45032733836404	8.58211156232177	8.3651008494665	8.10444436673153	0.196380445414132	0.262105348323249	0.574100843086496
Merged-chr1-184852459-4	chr1	184852385	184852585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6638.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	7.69525092601222	7.44926471097248	7.28390907643408	7.5212986570199	7.37634690264881	7.53490752248493	7.45645454516957	7.15338194248554	-0.146987374669362	0.439638553042608	0.727425871224001
Merged-chr11-120948487-4	chr11	120948412	120948612	+	967.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030696)	promoter-TSS (NM_030696)	28.0	NM_030696	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	4.69614717519602	5.08509689909975	4.85309925081211	4.72629360848196	4.96435068552802	4.69980315084215	4.90085257193079	5.17217878474969	0.206888656536758	0.539789865520168	0.792406302070178
Merged-chr8-80314130-4	chr8	80314068	80314268	+	926.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179877.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	4.66514513350474	4.49928006616753	4.94729967388622	5.09182882342073	4.2075720819804	4.75978725333763	4.75592781019916	4.53910081344689	-0.551150884902754	0.159587948865345	0.447252169945915
Merged-chr2-112367474-3	chr2	112367340	112367540	+	720.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026519, exon 2 of 5)	exon (NM_026519, exon 2 of 5)	587.0	NM_026519	68032.0	Mm.220942	NM_026519	ENSMUSG00000027131	Emc4	2610318K02Rik|Tmem85	ER membrane protein complex subunit 4	protein-coding	2.77390193858371	2.86052343718582	2.90448970428777	2.71760000599131	2.74110919448697	3.07549414758875	3.01077150756498	3.02127523891121	0.676377709809942	0.265201477456153	0.576971481610523
Merged-chr14-26970607-4	chr14	26970511	26970711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145221)	promoter-TSS (NM_145221)	-60.0	NM_145221	72993.0	Mm.202322	NM_145221	ENSMUSG00000040760	Appl1	2900057D21Rik|7330406P05Rik|AI585782|AW209077|BB022931|C88264|DIP13	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	protein-coding	8.65514838105476	8.7051262756054	8.61609515821777	8.68223439331874	8.57424000396251	8.54169091369587	8.83092056932079	8.52081701429073	-0.0540279697164689	0.722041001566526	0.889095345567057
Merged-chr10-120227051-4	chr10	120226963	120227163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025431)	promoter-TSS (NM_025431)	3.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	6.65048560036949	6.03879934147962	6.28638683078059	5.7154035044872	6.18093423556082	6.30616610040127	6.3929010427588	6.28187456246336	0.135604131677696	0.6275630640966	0.8412141266517
Merged-chr5-67608314-4	chr5	67608234	67608434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033415, exon 1 of 2)	5' UTR (NM_001033415, exon 1 of 2)	451.0	NM_001033415	330096.0	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	5.19934990074838	4.93493595003528	5.34687739106953	5.2128293318113	5.18544040506358	5.17423178719277	5.17465076403205	5.13294836084039	-0.024380846960024	0.935132591054971	0.976465285317276
Merged-chr17-57100578-4	chr17	57100465	57100665	+	726.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033508, intron 3 of 3)	ID_B1|SINE|B4	-4820.0	NM_009404	21950.0	Mm.41171	NM_009404	ENSMUSG00000035678	Tnfsf9	4-1BB-L|4-1BBL|AI848817|Cd137l|Ly63l	tumor necrosis factor (ligand) superfamily, member 9	protein-coding	3.50446264761414	3.85102977554581	3.37226876054166	3.752989417934	4.04236143332008	3.68426994836052	3.86997066507401	4.13972062152201	0.874340445037414	0.0774910542211084	0.301095102035797
Merged-chr8-116238847-4	chr8	116238737	116238937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-266178.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	6.01799374043854	5.56977882578952	5.69668932336874	6.02874838718339	5.95201279833214	5.87286092956187	5.53056479633623	5.99429400891173	-0.000341347685248909	0.999010143153838	0.999515665343703
Merged-chr4-116464331-4	chr4	116464219	116464419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008641)	promoter-TSS (NM_008641)	-138.0	NM_008641	17776.0	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	6.04891237466944	6.39812605591049	5.75482600804164	6.12327180331896	6.30516298810907	6.46428678586026	6.44155692130796	5.97805361678056	0.307767192514145	0.234379935883758	0.544268585576646
Merged-chr8-14997791-4	chr8	14997700	14997900	+	883.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037736, intron 27 of 27)	intron (NM_001037736, intron 27 of 27)	-13225.0	NM_029116	74901.0	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	4.3129106780792	4.09539332006927	4.22344721456332	4.57639540213873	3.98149733653732	4.39672447061788	4.45559433973179	4.31087303264511	-0.0938646369574146	0.823147425526294	0.932185203682946
Merged-chr4-86683482-4	chr4	86683379	86683579	+	866.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-13420.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	4.36128395748331	4.21067248058483	3.80219793036153	3.71966321250741	4.3583218560102	4.40560925262995	4.56610001241873	4.43925118910066	0.998883132696526	0.0202408232970573	0.129073782607171
Merged-chr2-72351533-4	chr2	72351457	72351657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 2 of 19)	intron (NM_023057, intron 2 of 19)	65856.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	5.77405217592875	5.83444497511652	5.48201624779485	5.6919040951303	5.80836831243995	5.6292021025565	5.74576002378292	5.7945088319109	0.0770588294436204	0.764598562037596	0.907764886360986
Merged-chr4-34429845-5	chr4	34429721	34429921	+	909.4266359999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120794.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	3.33366510985865	3.66594211969012	3.83372588456878	3.59996868418242	3.13676096422064	3.38509359686324	3.38105802726488	3.27002904710537	-1.15775975927267	0.0324034619705995	0.176226825675032
Merged-chr8-24546478-4	chr8	24546377	24546577	+	791.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145949, intron 7 of 9)	intron (NM_145949, intron 7 of 9)	29856.0	NM_145949	209176.0	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	3.79997359949484	3.78395675535356	3.58099461029976	3.79732125413443	3.8739689054023	3.69741992570556	3.88088442953977	3.94123493383072	0.304548403930747	0.497645842936407	0.767156854749973
Merged-chr15-58750208-4	chr15	58750110	58750310	+	957.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73217.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	4.16152864838722	3.80693097109523	4.5775693598605	4.17703998513928	4.10480453501876	4.2391909070273	4.62339866642449	4.50163469865837	0.42054267307013	0.340035357898766	0.649078099444502
Merged-chr11-117955852-3	chr11	117955763	117955963	+	879.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13503.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	4.0636211733683	3.68905069530518	3.83975902387686	3.65881081204046	3.6210175513246	3.8573300287259	3.61290665917629	3.88560375228975	-0.198347247454025	0.674473181304141	0.866144208984521
Merged-chr15-66662175-4	chr15	66662082	66662282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-8588.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	5.87714113349576	6.01081428945272	5.76032589066808	6.08055696601254	5.94068353527825	5.46927847737981	5.51784516651482	5.75624565757705	-0.404870457451599	0.134906734387697	0.408839148894254
Merged-chr7-143764049-2	chr7	143763949	143764149	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_203492, exon 2 of 2)	3' UTR (NM_203492, exon 2 of 2)	2944.0	NM_203492	381974.0	Mm.297839	NM_203492	ENSMUSG00000050276	Mrgprg	Gm1098|Mrgg	MAS-related GPR, member G	protein-coding	2.84684091577511	2.99901397485437	3.04716271609906	2.76250646093917	3.31115510471491	3.27843426058772	3.15287897689118	3.16374213555193	1.3196582056422	0.0206939842422679	0.131012817253437
Merged-chr16-20085433-3	chr16	20085331	20085531	+	654.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12123.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	3.26911407467552	3.26440560478578	3.44266578455825	3.55103869181752	3.07597127434377	3.80756180545675	3.06168115504393	3.44069304306441	-0.0370431916848353	0.950245878854659	0.982218805887075
Merged-chr2-148597172-3	chr2	148597075	148597275	+	635.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-75440.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	3.30575090339193	3.51771541000593	3.70939199085496	3.50462582986192	3.37192090362791	3.87857899832938	3.83228718813588	3.60417010103581	0.517625567696124	0.310278244015357	0.622452228532409
Merged-chr2-169781986-1	chr2	169781886	169782086	+	726.0	f0_c57.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	148340.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	2.32414336560359	2.27539210843533	2.32432354969275	2.05164125627236	3.30310286360153	2.95215805058392	3.09447466183195	2.77124234389022	6.10496488535939	1.53626269217109e-10	1.14262948971835e-08
Merged-chr6-134189956-4	chr6	134189851	134190051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	154251.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	6.54287523791497	7.20564095588935	7.0359687423642	6.76342124683501	6.79098863128881	6.95543229878994	6.85306548646403	6.18508803155348	-0.255394660761014	0.321789634036699	0.633250327926409
Merged-chr14-43933157-2	chr14	43933057	43933257	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-9789.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	3.58993136898657	3.30924486812747	3.32590425648088	3.00969364849216	3.40602659758485	3.31597303751186	3.47637953207747	3.43640015044329	0.346923527053719	0.526161897787238	0.783568247232079
Merged-chr5-8894824-4	chr5	8894730	8894930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008830, intron 2 of 27)	intron (NM_008830, intron 2 of 27)	1109.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	5.65591487567063	5.28353824347886	6.20740269085319	6.49788818195257	5.68839235749314	5.42371752477617	6.30963052015628	5.90224135521627	-0.212176677989122	0.562560154819148	0.805707247859895
Merged-chr8-125729956-4	chr8	125729846	125730046	+	967.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-4257.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	5.51095995993748	4.72190400389056	4.97796190363447	5.06136771397604	4.95437291786064	4.87411492788194	5.57603489928597	5.38105709339666	0.244511801436875	0.503151599427179	0.770216931103412
Merged-chr17-83730725-4	chr17	83730677	83730877	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 3 of 16)	Lx8|LINE|L1	24614.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	4.57454236996785	3.87144091484758	4.45697843930239	5.12045255704054	4.02538114388702	4.02602530121275	4.58999276020741	4.45406151482247	-0.667996014590434	0.181067794315782	0.477518508025307
Merged-chr6-129397463-5	chr6	129397418	129397618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001204239, exon 1 of 5)	5' UTR (NM_001204239, exon 1 of 5)	221.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	5.547060106226	5.44099919316195	5.18451152437288	5.5882710267421	5.95890261127828	5.93577092870885	6.3196566498702	5.95870144865814	0.96069896573242	0.000408653223501668	0.006553487271371
Merged-chr13-113590974-3	chr13	113590866	113591066	+	940.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27598.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	4.03793195271947	4.246598276812	4.31856883443617	4.23065095624143	4.43278530112768	3.99415513511356	4.37928316256977	4.22922804782205	0.159250345969112	0.692947710876164	0.875187765226167
Merged-chr5-67847521-4	chr5	67847407	67847607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009727)	promoter-TSS (NM_009727)	-76.0	NM_001038999	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	9.28551975248347	9.28134033193587	9.5633322127724	9.60733339804255	9.32462000876075	9.29433906821424	9.44983547017071	9.07679518927862	-0.186937835101926	0.246966328152506	0.558168726560377
Merged-chr7-120098582-4	chr7	120098477	120098677	+	956.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3849.0	NM_145586	233806.0	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	4.25800126263405	4.53677845905503	4.25864168594703	4.28536651761363	4.53674992264099	4.18273921965507	4.6988452326393	4.05521660517461	0.145822145391469	0.72263312136865	0.88928160490736
Merged-chr2-60323676-4	chr2	60323644	60323844	+	956.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013825, intron 24 of 34)	intron (NM_013825, intron 24 of 34)	-39260.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	3.15934766954543	3.25178989044785	3.15973207908816	3.1034040077	3.48455917411309	3.33059363028299	3.20707001519826	3.0311271302865	0.430123420867773	0.436459581657931	0.72511335456143
Merged-chr1-135282733-4	chr1	135282625	135282825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 1 of 9)	intron (NM_001159624, intron 1 of 9)	1359.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	7.55787242438202	7.83231186566978	7.4843290079752	7.60602947750816	7.5505913402862	7.86564508864925	7.64269210630639	7.70750242251922	0.0823719388228336	0.647081148775986	0.851605116430591
Merged-chr18-49576487-3	chr18	49576384	49576584	+	946.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53195.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	4.22833438712519	3.70386219445956	4.34754027275413	4.73046593373181	3.82485291893659	3.7887044430643	3.83026452829569	3.72744423980074	-1.40368637117763	0.00503469707705906	0.047794705687915
Merged-chr11-106428255-4	chr11	106428145	106428345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 5 of 21)	intron (NM_023913, intron 5 of 21)	-45464.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	6.5795630664379	6.74372266427142	6.59655858254918	6.54251043531687	6.49157244758012	6.72466327380854	6.77816139608529	6.2914900081388	-0.0482660392126026	0.826533192611618	0.933459863315126
Merged-chr19-44401890-3	chr19	44401786	44401986	+	980.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009127, exon 4 of 6)	exon (NM_009127, exon 4 of 6)	5823.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	3.87941210087134	4.19821633283424	4.43135430162824	4.23420207892408	3.74817896709092	3.48894866475947	3.91556676765365	4.02770260819543	-1.07457297959346	0.0240286803865722	0.144612956898268
Merged-chr2-93507813-4	chr2	93507710	93507910	+	859.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-44860.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	4.45980012753382	4.44913369556917	4.7934876856685	4.03244989765774	4.46375265150214	4.59195463301443	4.66916550482342	4.27661926861396	0.140050912594673	0.733520775552596	0.894503508421563
Merged-chr7-55909753-4	chr7	55909683	55909883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 22 of 30)	MLT1C|LTR|ERVL-MaLR	52710.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	7.59011232001375	7.52122879971406	7.63370047164617	7.66493648939267	7.34751186220711	7.33066431803442	7.51931062727962	7.42089744742206	-0.267306569763983	0.11744387138099	0.37901420570491
Merged-chr2-166793761-4	chr2	166793666	166793866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023815)	promoter-TSS (NM_023815)	-1.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	6.2980061956612	5.80525750149299	5.96629004607039	5.82963904038195	5.98880106724795	6.14194496412011	6.14095909636703	6.0275038662185	0.151648941801008	0.545191307440623	0.795786194536872
Merged-chr1-86064746-4	chr1	86064644	86064844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027357, exon 1 of 25)	5' UTR (NM_027357, exon 1 of 25)	125.0	NM_027357	70247.0	Mm.280013	NM_027357	ENSMUSG00000026229	Psmd1	2410026J11Rik|P112|S1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	protein-coding	6.1538169251225	6.33567067844799	6.56980149288272	5.88404539760024	5.53929956226211	6.22861994142216	5.81433076531597	6.1105196285278	-0.481701469860999	0.0979109089829625	0.342856930621314
Merged-chr13-85508001-4	chr13	85507914	85508114	+	979.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-218528.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	5.00795524018395	4.88062335019159	5.11122952152424	5.62147967244364	4.9682505929471	5.07453881687625	5.11838394788334	5.17164426625426	-0.248214342976135	0.473191102836864	0.751076459932416
Merged-chr1-52909884-3	chr1	52909709	52909909	+	848.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146108, intron 11 of 13)	intron (NM_146108, intron 11 of 13)	43031.0	NM_144953	67080.0	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding	2.64308424102847	2.49512694355813	2.58313135987198	2.78433494509599	2.13764134295374	2.48589368229917	2.30403743126065	2.51862839483064	-1.60503734972886	0.0479886985180307	0.226031800423853
Merged-chr13-19855088-4	chr13	19854962	19855162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30805.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	6.16382813102424	5.64253373147921	5.79537557235812	5.47788644351251	5.61628600069678	5.30675108032142	5.54463890695002	5.26544703109246	-0.561190671480188	0.0658415748217585	0.273206191884195
Merged-chr14-52020700-4	chr14	52020601	52020801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253694)	promoter-TSS (NM_001253694)	32.0	NM_001253696	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	5.45297700248833	5.29749193517217	5.07886901384285	5.2685228901581	5.4487712050231	5.42363606808563	5.57802369383476	5.14602648130634	0.233112918709029	0.424891870734181	0.716567599871949
Merged-chr6-125349523-6	chr6	125349328	125349528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011609)	promoter-TSS (NM_011609)	-295.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	4.2191741124391	4.12117263228945	3.9265841162023	3.90801248795787	4.22221265486285	4.30135154255545	4.11132091191769	4.34175654490481	0.52625712126706	0.19392292508422	0.494240436271961
Merged-chr16-57391574-4	chr16	57391478	57391678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	LSU-rRNA_Hsa|rRNA|rRNA	38301.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	8.09807222483716	7.97081456747522	7.72644016425768	6.46318890610951	8.16001118097296	7.94605601580043	8.11512893693054	8.86847637544291	0.789864232810287	0.115287571667501	0.37559749467782
Merged-chr4-88693634-4	chr4	88693537	88693737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2369.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	5.7509180373911	5.48267107759343	5.96803630549348	5.61507909563353	5.90812238860337	5.37608587107478	5.5454709189728	5.67441722421986	-0.0896458648544594	0.754688506585087	0.903394260200158
Merged-chr11-113450259-3	chr11	113450154	113450354	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 5 of 9)	MTD|LTR|ERVL-MaLR	115561.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	5.65062509439414	5.39421437154577	5.5416490994478	5.77825250640076	4.2191295099472	4.35625883464396	4.0729797747989	4.77244662409047	-2.53942337153643	2.53513576514785e-11	2.14055075477413e-09
Merged-chr7-80729901-4	chr7	80729822	80730022	+	893.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 28 of 37)	intron (NM_016721, intron 28 of 37)	-41045.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	4.0569879946827	4.37772819825988	4.20032642296446	4.07904178694764	4.2868362535211	4.12979982547465	4.38679135478523	3.95072095455996	0.0571438964469675	0.890021109272463	0.958829328100144
Merged-chr1-181922246-4	chr1	181922163	181922363	+	973.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010135, exon 7 of 15)	exon (NM_010135, exon 7 of 15)	-79862.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	4.65512932101514	4.70333095776339	4.69347559442224	4.41616088204575	4.48862225104392	4.82736302437258	4.33771139033515	4.65281912033024	-0.0590349392040935	0.87269193327673	0.952272557441005
Merged-chr6-41605329-4	chr6	41605278	41605478	+	619.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146351)	promoter-TSS (NM_001146351)	-104.0	NM_001146351	13848.0	Mm.271976	NM_007680	ENSMUSG00000029869	Ephb6	Cekl|Mep	Eph receptor B6	protein-coding	3.63436458075392	3.66268626632429	3.90646619108843	4.00926234642918	3.65033799309028	3.92529185461195	4.22753835988471	3.99848973170045	0.383964264127337	0.421360052452806	0.713975936713839
Merged-chr7-88259859-4	chr7	88259760	88259960	+	863.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-18225.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	4.03086667683459	4.22623906734334	4.08100245666463	4.10755751403126	3.89753156027965	4.34557775728052	4.28372429606183	4.17217650249305	0.156953036756133	0.704976467187292	0.881563627356675
Merged-chr2-173337815-4	chr2	173337714	173337914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61281.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	6.93914154176518	7.09512931738455	6.96662931311432	7.36432431033897	6.98731877034706	7.03559497232107	7.43580643507787	6.63752582086119	-0.0801697365039562	0.733791942288821	0.894650257107209
Merged-chr6-72120100-4	chr6	72120010	72120210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045163)	TTS (NR_045163)	2830.0	NR_045163	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	6.67073005975759	6.42700323695367	6.62564066122349	6.99593937449777	6.59943401271843	6.50405389983139	6.72520679176168	6.92593073467446	-0.021256935077325	0.927574223429833	0.973558335660854
Merged-chr17-63393037-3	chr17	63392950	63393150	+	777.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 4 of 8)	intron (NM_015794, intron 4 of 8)	-80077.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	3.66328928916108	3.07462512556121	3.1661709769087	3.53704813973098	3.24561912182953	3.46848899669375	3.55334862899455	3.46392614198563	0.158148524579826	0.778989124076769	0.913809930096951
Merged-chr11-101562635-4	chr11	101562530	101562730	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008676, intron 7 of 23)	B2_Mm2|SINE|B2	9976.0	NM_001252223	17966.0	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding	5.23259995289226	5.89717104236605	5.36096896099978	5.1756481607096	5.65980978073536	5.62336581287612	5.17418813640781	5.4450611944121	0.0823150837119047	0.800084247625007	0.922895620158559
Merged-chr7-79496166-4	chr7	79496070	79496270	+	996.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3856.0	NR_040311	101694.0	Mm.41661	NR_040311	ENSMUSG00000097023	Mir9-3hg	AI854517	Mir9-3 host gene	ncRNA	5.28680344888337	5.22337608598751	4.73824447926776	5.06051130888475	5.35017982920086	5.12716664142389	5.78474978127184	5.22298366536753	0.555725894559813	0.0919872961994317	0.331706963685058
Merged-chr2-153121943-6	chr2	153121842	153122042	+	898.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	13474.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	3.32151409527788	3.27288312359966	3.25658878478309	3.70607434626137	3.59630652431859	3.91810004721067	3.64214518437652	3.44192730402651	0.757948428035103	0.168178747516357	0.460185102428276
Merged-chr6-71223491-4	chr6	71223385	71223585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160127, intron 6 of 9)	MLT1B|LTR|ERVL-MaLR	23606.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	5.85041287550828	6.18877428477094	6.07226812454981	6.25121061913307	5.8859973169845	5.73357039780418	5.84549507863429	5.91762731263124	-0.415817598161794	0.0929334437357725	0.333571527109891
Merged-chr17-24687473-4	chr17	24687374	24687574	+	864.1333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011522, intron 2 of 3)	CpG	2475.0	NM_011522	20974.0	Mm.26032	NM_011522	ENSMUSG00000007021	Syngr3	-	synaptogyrin 3	protein-coding	4.33730345278916	4.47829910558501	4.33796361163856	4.57403050397072	4.27816206363986	4.5104952797165	4.44503182114461	4.28986806545855	-0.162309632757038	0.666491758244849	0.862000851460164
Merged-chr6-91669399-3	chr6	91669319	91669519	+	700.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-14648.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	3.30152358211517	3.32103944825871	3.1250319270141	3.27109729082257	3.27250172386621	3.29712393570051	3.17559177300117	3.24396000800034	-0.0380061999646087	0.942963510386068	0.97939909270739
Merged-chr5-105500443-3	chr5	105500355	105500555	+	928.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19016.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	4.1311786591825	3.71588898827018	4.13188795153494	4.10596179125574	3.05624871385735	3.34572625785706	3.6064883235348	3.43677470795541	-2.23189926380997	8.35323346384877e-05	0.00174618151166899
Merged-chr7-102245339-4	chr7	102245209	102245409	+	868.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	4809.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	3.66444443682918	3.62729436220498	3.7709871902703	3.67664246053023	3.93997152734797	3.99001911406663	3.47598880861146	3.86659355111036	0.445975531917896	0.341635548815489	0.650639445837748
Merged-chr2-165321698-4	chr2	165321607	165321807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302752)	promoter-TSS (NM_001302752)	-881.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	5.83919077215183	5.47464204089341	5.86299848848297	5.99036264731583	5.29023185450877	5.84412430716344	6.0201436916224	5.78926607427734	-0.097851212260675	0.7425657740424	0.898514054068236
Merged-chr5-136567327-4	chr5	136567253	136567453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009986, exon 1 of 24)	5' UTR (NM_009986, exon 1 of 24)	137.0	NM_001291234	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	5.89791400702027	6.35199354348428	5.64535433934757	5.93698328009081	5.95951609817563	6.162846425247	5.72359395575053	6.06793040282189	-0.0030584558283309	0.991108239822817	0.996637924214303
Merged-chr11-50285419-4	chr11	50285315	50285515	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	RLTR20B2|LTR|ERVK	6921.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	6.11493486999418	6.15593302939143	6.22583163367591	5.70560747838846	5.79834378340012	5.86457750904419	5.94371107946345	5.2012464330387	-0.514337634556321	0.0832911479011569	0.313664918070814
Merged-chr7-3300411-4	chr7	3300310	3300510	+	892.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3122.0	NM_001291434	18752.0	Mm.7980	NM_011102	ENSMUSG00000078816	Prkcg	PKCgamma|Pkcc|Prkcc	protein kinase C, gamma	protein-coding	4.49008077180074	4.44406525669427	4.09746057152697	4.04430813751884	4.847172243008	4.99503739407466	4.55156027714473	4.68442636858321	1.13943431107944	0.0027736437979282	0.0300494964829119
Merged-chr8-124722077-4	chr8	124721989	124722189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026855)	promoter-TSS (NM_026855)	-50.0	NM_026855	68865.0	Mm.22779	NM_026855	ENSMUSG00000031982	Arv1	1110067L22Rik|AI461928|AW121084	ARV1 homolog, fatty acid homeostasis modulator	protein-coding	8.37583427148207	8.27150738859898	8.05804693466742	8.21469292787367	8.50848111897463	8.63734746266972	8.76106058982221	8.15155301797734	0.378516317404663	0.0390758099254512	0.198698176502621
Merged-chr7-6282977-4	chr7	6282863	6283063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3617.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	5.10992307308098	5.3732180685945	5.45840624717895	5.29844560466024	5.89865361026933	5.42461696490826	5.2545205252038	5.42663821396055	0.395035567486245	0.196743613033287	0.497920484696759
Merged-chr15-59811748-4	chr15	59811643	59811843	+	966.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16784.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	4.57168608021914	4.83188188776883	4.84233920903544	4.76892080286076	4.62088138737992	4.6607203327733	4.81907138023131	4.76770972465837	-0.0940514032482426	0.780444045215069	0.914508092485582
Merged-chr12-98677613-4	chr12	98677506	98677706	+	964.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011877, exon 19 of 19)	3' UTR (NM_011877, exon 19 of 19)	49464.0	NM_001289574	104871.0	Mm.210053	NM_178914	ENSMUSG00000021007	Spata7	AI661438|B230306G18Rik|HSD3	spermatogenesis associated 7	protein-coding	4.94191145973414	4.82138600255259	4.90549692216709	5.30494131221114	5.39055850213469	4.7458955952224	5.46982342649725	4.90224275199292	0.282053155568311	0.436248832181856	0.72505818409614
Merged-chr2-12053894-4	chr2	12053776	12053976	+	918.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-247370.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	4.72601834254763	4.16808501378816	4.30535493041135	4.06458220971572	4.29465695400153	4.68471596755745	4.33028231327077	4.25650053180677	0.167436442641427	0.689601505615168	0.87350996686744
Merged-chr9-99245593-2	chr9	99245493	99245693	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023873, intron 1 of 17)	intron (NM_023873, intron 1 of 17)	2252.0	NM_023873	68121.0	Mm.288739	NM_023873	ENSMUSG00000056267	Cep70	6720484E09Rik|Bite|C030018L16Rik	centrosomal protein 70	protein-coding	3.04586044580389	2.72861745709322	2.71732365379557	2.51431426644396	2.60286791882092	2.69221634427641	2.35632773215573	2.5846298164191	-0.998386703235861	0.170845449888761	0.464014859975631
Merged-chr10-77543352-4	chr10	77543259	77543459	+	935.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 3 of 15)	MTE2b|LTR|ERVL-MaLR	13011.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	4.53484672805979	4.50724916701352	4.32310863860521	4.69110053374233	4.39548641062026	4.45106868092454	4.43461428249873	4.32049063048533	-0.309104397080515	0.405967281783132	0.702492953518781
Merged-chr11-97433316-3	chr11	97433217	97433417	+	894.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16843.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	3.6921767379215	3.40610793080811	3.69271008977479	3.35569025894319	3.70099066429735	3.75897754271257	3.86546187768036	3.63821674348918	0.6614212539067	0.169793231329712	0.462572874827502
Merged-chr8-33653471-4	chr8	33653383	33653583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010344, exon 1 of 13)	5' UTR (NM_010344, exon 1 of 13)	245.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	6.90599079411662	7.04763195137828	6.86456838912212	7.13733567551673	7.21246753127285	7.24193044039977	7.66851750627408	7.36445488679792	0.51416969056452	0.011289589596591	0.0860273737175628
Merged-chr2-31082875-4	chr2	31082793	31082993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	13607.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	6.68445478484854	6.82624845574392	6.83863558660355	6.76716191470079	6.68853107115274	6.54514103548223	6.37222901685622	6.34370219034107	-0.397315537869558	0.0605557758711373	0.260052547978977
Merged-chr17-31559082-4	chr17	31558984	31559184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-5689.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	5.88628801258542	5.89941346087365	5.56694641681753	5.69464162056433	5.69497474644081	5.89936673659531	5.39169391472622	5.69592612330333	-0.140858948918675	0.60278899817875	0.827826670564199
Merged-chr1-75316798-4	chr1	75316565	75316765	+	826.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110831, intron 2 of 14)	intron (NM_001110831, intron 2 of 14)	352.0	NM_016878	13437.0	Mm.24680	NM_016878	ENSMUSG00000026209	Dnpep	AA407814	aspartyl aminopeptidase	protein-coding	3.11184844224641	2.94962243878524	3.26945038147506	3.03004509900197	2.97016377151687	3.04117874718734	2.79034554634088	2.86592533554086	-0.726014948071445	0.230820628939593	0.540322345094593
Merged-chr19-8982873-4	chr19	8982838	8983038	+	953.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6346.0	NR_104460	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	4.16693985326349	4.55249421088624	4.07607728376323	3.88490558138836	3.95915473954506	4.29433421639031	3.79980475582166	3.75347661096976	-0.583483107831409	0.21704137310984	0.523829780841764
Merged-chr10-80824411-3	chr10	80824324	80824524	+	890.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2232.0	NM_001301034	18245.0	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	3.47356931162432	3.3467475907021	3.3055124362112	3.47411600208128	3.54552239574458	3.41730463697676	3.40714470122914	3.30389922094685	0.0678509979217188	0.894088823673774	0.960481560907683
Merged-chr1-9906013-3	chr1	9905909	9906109	+	722.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2629.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	4.07279762752651	3.82320308834224	4.16115036232417	3.8735454676626	4.0628934207271	4.10237524895592	3.63453846991198	4.15848622396297	0.067135420488481	0.881480038040151	0.955384724180766
Merged-chr2-116989502-4	chr2	116989407	116989607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89355.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	7.32581199397299	7.10688286845573	6.98839128470751	7.09854330285946	7.07308295269802	7.26481753422896	7.18788675344585	7.02173765224296	0.00533018967413218	0.977646330331061	0.991939645680407
Merged-chr1-151585842-4	chr1	151585752	151585952	+	749.962524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	14479.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	4.01578072733071	3.81048556552382	3.52325900116722	3.76890862044614	3.83755978377514	4.14027524473326	4.08561722768124	4.01389954908072	0.636900567909612	0.157350854938541	0.443883818312874
Merged-chr10-42464428-3	chr10	42464337	42464537	+	793.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359297, intron 1 of 11)	L2c|LINE|L2	14128.0	NM_001359297	215951.0	Mm.89646	NM_145743	ENSMUSG00000038302	Afg1l	CG8520|Lace1	AFG1 like ATPase	protein-coding	3.39226792286751	3.38943289805789	3.34043205810465	3.31154609481239	2.94921483079211	3.08130212549374	3.3268252028403	3.03989634944933	-0.996753368415051	0.0796677308788084	0.305663508852021
Merged-chr11-70562419-4	chr11	70562317	70562517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045959)	promoter-TSS (NM_001045959)	-464.0	NM_001045964	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	5.53915658936995	5.37240256316498	5.04933198011816	5.38803431489756	5.78456418510296	5.19080775108003	5.379036409026	5.11852770425999	0.108635328136881	0.735966949727593	0.895751244963882
Merged-chr7-126583350-4	chr7	126583222	126583422	+	879.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329789)	promoter-TSS (NM_001329789)	-86.0	NM_009907	12752.0	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	4.35824761309829	4.09573920390285	3.74444540464366	3.75196270041779	4.18574499743784	4.14084843725262	3.78881540977788	4.27882410985742	0.284554745577237	0.539116835741565	0.791983989773924
Merged-chr11-53819013-4	chr11	53818892	53819092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 2 of 3)	intron (NR_033332, intron 2 of 3)	40264.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	5.6948603945147	6.64043246378216	5.83108072121523	5.59044677439274	6.48350485075044	6.36322195329485	6.43159734504157	5.87723986766425	0.45834220874771	0.157620910180591	0.444258286439546
Merged-chr13-21717612-4	chr13	21717542	21717742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178206)	promoter-TSS (NM_178206)	14.0	NM_178206	319152.0	Mm.377874	NM_178206	ENSMUSG00000101355	Hist1h3h	H3-291	histone cluster 1, H3h	protein-coding	6.0520223866653	5.85329380046738	6.07241652117629	5.61668600630296	5.38726465249432	5.89659670611162	5.24401690478924	6.00921806766271	-0.383068773743964	0.215413660011596	0.521581416673994
Merged-chr8-11103505-2	chr8	11103405	11103605	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95075.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	3.70323927616927	3.84955645304739	4.68410913444367	4.21510051673019	3.71935013110178	3.63527830884034	3.5029598589	3.86727790121352	-1.34197283360634	0.0110968717564478	0.084986468124833
Merged-chr14-31217846-2	chr14	31217746	31217946	+	765.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025379)	promoter-TSS (NM_001025379)	-27.0	NM_001025379	218877.0	Mm.27812	NM_001025379	ENSMUSG00000021904	Sema3g	AK129018	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	protein-coding	3.40726963601098	3.18398687892981	3.40774635712243	3.21391083982362	3.34930463081951	3.40945322917187	3.28437233829679	3.29491517428573	0.13148318067181	0.801108689383379	0.923337043240231
Merged-chr7-84143311-4	chr7	84143198	84143398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133722, intron 1 of 2)	intron (NM_133722, intron 1 of 2)	8595.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	5.09529429736971	4.99259047712107	5.0232976921904	5.45538966736419	5.32668411404427	5.37361912371912	5.53670656144456	5.58524365447522	0.494745992238439	0.111939486006149	0.369743500552577
Merged-chr6-86779415-4	chr6	86779326	86779526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013471, intron 1 of 12)	L1M1|LINE|L1	-4312.0	NM_001331120	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	6.76977533852579	7.08282536902894	7.09062115309359	7.05741297402305	7.08486840019556	6.65570002577392	6.51512611450263	6.62781770492415	-0.358352694483482	0.111973929607264	0.369812190771876
Merged-chr8-56324375-1	chr8	56324275	56324475	+	707.0	f0_balb.idr	Intergenic	Intergenic	29823.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	3.61191251271257	3.14815181388087	3.52321998773196	3.36419208985482	2.96584426572227	3.13032237426448	3.00956891062698	2.87432077366745	-1.72431585077625	0.00493164108510723	0.047086422642099
Merged-chr12-36190570-4	chr12	36190467	36190667	+	928.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146033, intron 7 of 9)	intron (NM_146033, intron 7 of 9)	27651.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	4.90261558803254	5.11009551828668	5.22686830192633	5.48641004113529	4.55753232951935	4.75156326553264	5.0504904787777	4.78479335193759	-0.836582259252871	0.0162294676502027	0.110799662178571
Merged-chr9-71806667-4	chr9	71806598	71806798	+	738.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-35096.0	NM_001304362	68178.0	Mm.99961	NM_026599	ENSMUSG00000032232	Cgnl1	4933421H10Rik|9930020M10Rik|AI503810|Jacop	cingulin-like 1	protein-coding	3.24757001628854	3.84950960884653	3.37678990743854	3.36652597112256	3.353456486082	3.8694980569077	3.42388849453518	3.60015914926396	0.294011887428221	0.590714967388487	0.821188638407585
Merged-chr10-61366133-1	chr10	61366033	61366233	+	550.0	f1_balb.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	17390.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	2.66966424073338	2.8097052254515	2.9192518311253	2.60431933471171	2.56442797355497	2.90903150561836	2.79032644665669	2.79911888934619	0.0787014635795257	0.903518996699877	0.964287824952031
Merged-chr1-152582985-3	chr1	152582867	152583067	+	853.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	Arthur1|DNA|hAT-Tip100	42250.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	3.15950260952626	3.47874935170535	3.33774254479783	3.26175520499244	3.21293124925962	3.33340295884424	3.21054429976081	3.39007479331373	-0.100387342341489	0.850509902413948	0.943627844188644
Merged-chr5-39831389-4	chr5	39831278	39831478	+	758.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186747.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	3.96831157282295	3.97596917576261	3.81521674914197	4.13863829366415	4.07461078250878	3.87848916373116	3.85306043499919	4.05949316161358	-0.0457500848142814	0.916184827812619	0.968918528564949
Merged-chr11-4594304-1	chr11	4594204	4594404	+	816.0	f0_balb.idr	intron (NM_028860, intron 1 of 17)	CpG	511.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	4.69541271904966	4.49259111649252	5.08088164065152	4.29740320406195	4.91376897217663	4.9123740093309	4.86170886321201	5.24606957954967	0.684809372224185	0.0676282262749859	0.277591229919106
Merged-chr11-70254607-2	chr11	70254507	70254707	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007440, exon 2 of 14)	exon (NM_007440, exon 2 of 14)	763.0	NM_001331118	11684.0	Mm.12286	NM_007440	ENSMUSG00000000320	Alox12	9930022G08Rik|Alox12p|P-12LO	arachidonate 12-lipoxygenase	protein-coding	3.04882465512737	2.93079803529134	2.99382442638808	2.62713704743246	2.75143026033135	2.91997082451175	2.86473356508038	2.67330401467162	-0.448218799079314	0.489277279632285	0.761643200749732
Merged-chr7-139249621-4	chr7	139249577	139249777	+	887.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098636, intron 1 of 2)	intron (NM_001098636, intron 1 of 2)	1195.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	3.38301580869519	3.43408310309093	3.81689189324832	3.49086524753032	3.44898976597581	3.79027064381836	3.54919395723461	3.94515487584067	0.482878812172882	0.342359599943688	0.651380983250696
Merged-chr5-100915327-2	chr5	100915227	100915427	+	948.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69098.0	NM_172715	231510.0	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	2.8762517814401	2.85325850932756	2.87654973114696	3.03106824195611	2.9780397660888	3.11226580437103	3.1607273690072	3.22319204927235	0.818734338522073	0.163404347541139	0.453060067530022
Merged-chr17-35209538-4	chr17	35209457	35209657	+	747.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4206.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	3.23997606459636	3.47493757357228	3.24031149567343	3.47227466549714	3.8873291745053	3.88413676826853	3.59596083669775	3.97945763653585	1.46656974422929	0.00418779933653961	0.0415620982955316
Merged-chr2-34803203-2	chr2	34803103	34803303	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-3291.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	2.72039219626342	2.56701221219165	2.72076941386397	2.21481177635298	2.583688650217	2.63285924650581	2.44724801768511	2.77811520714557	0.23840053475471	0.746351064275612	0.900074408757744
Merged-chr1-180255689-2	chr1	180255589	180255789	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128605, intron 1 of 10)	intron (NM_001128605, intron 1 of 10)	611.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	3.84352358631662	3.41471529112644	3.79774075701351	3.66822225148962	3.65421231619163	3.81832819894708	3.40390792592068	3.59123172249868	-0.194030602533107	0.695765339920402	0.876851576599482
Merged-chr18-9490673-4	chr18	9490585	9490785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40531.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	6.4380719498457	5.90199143513192	6.98059813064857	6.87362331936608	6.17511588370634	6.02649417264404	6.35446084146111	6.17194080933398	-0.639997273337954	0.0280258623206615	0.160178251490659
Merged-chr11-4600129-4	chr11	4600026	4600226	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-5311.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	5.42193726010029	4.48996216110198	4.6889925527678	4.89423284667499	5.34369422450906	4.94990985129898	4.82779360722321	5.02489711741974	0.27328612518892	0.474077002578873	0.751607118426792
Merged-chr9-121719916-3	chr9	121719809	121720009	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010918, intron 2 of 16)	CpG-15515	728.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	5.24670255756784	5.22992021853142	5.40086295018562	5.51189120774046	5.31250352366233	5.45525493030254	5.34495032495821	5.72518449586815	0.175180191018004	0.548167093949863	0.797241506537612
Merged-chr1-16637648-3	chr1	16637561	16637761	+	813.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-18323.0	NM_001271017	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	3.60945561092029	3.42938374792274	3.60995602478074	3.61628438356116	3.47599085948553	3.67214764991774	3.69590233579711	3.65971640244379	0.167706668464908	0.725864672612413	0.890921883682774
Merged-chr6-100211867-4	chr6	100211751	100211951	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	75507.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	4.30306838534343	3.8895436384594	3.79263903349547	4.14952494011257	4.08381367236217	4.02348517135646	3.88629660407139	4.04806851756863	-0.104787546969504	0.810884861124754	0.926854276252049
Merged-chr12-99264537-4	chr12	99264441	99264641	+	992.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 4 of 5)	intron (NM_183186, intron 4 of 5)	-101733.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	5.71469278852388	5.51380873990011	6.23879768669024	6.28708537790411	5.36027786542086	5.26985669712392	5.82714149423443	5.33773905058226	-0.864931303410821	0.00720779293724527	0.0622248021200947
Merged-chr9-95640169-4	chr9	95640154	95640354	+	990.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 2 of 8)	intron (NM_029620, intron 2 of 8)	2626.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	4.4926286919774	4.33615858168198	4.57330257050381	3.97955834004353	4.19773587161076	4.81937483114942	4.43084515147576	4.78337201339939	0.512841650859836	0.222447633107302	0.530502983049462
Merged-chr9-88702344-4	chr9	88702245	88702445	+	934.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359992, intron 2 of 2)	URR1B|DNA|hAT-Charlie	17242.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	4.58585647619412	4.71343759920629	4.66596733844151	3.9446519751067	4.78251143034336	4.83907420358489	4.60508674743307	4.77322384582481	0.555831917043899	0.166836401932214	0.458273771972873
Merged-chr9-51007095-4	chr9	51006996	51007196	+	734.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 1 of 15)	intron (NM_178710, intron 1 of 15)	1977.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	3.838157418863	3.64272056880286	3.50305710171514	3.49933603444218	3.97982054522304	4.00939560792117	3.72088909618414	4.01960761991608	0.941100344174025	0.0399901017726323	0.201761798559271
Merged-chr7-5080155-4	chr7	5080026	5080226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252454)	promoter-TSS (NM_001252454)	-109.0	NM_010147	13854.0	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	7.56301100658066	7.52745815492567	7.42117449833138	7.6354207871915	7.6472761679714	7.7234598503263	7.80769004842168	7.79643926014373	0.258809307284179	0.124142190996107	0.390992275271539
Merged-chr7-80191580-4	chr7	80191410	80191610	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013659, intron 1 of 14)	intron (NM_013659, intron 1 of 14)	4669.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	3.81598530564771	3.3673173927151	3.81655325425544	3.66549136251274	3.71425667827973	3.65997593478217	3.64405621103719	4.26691414395082	0.502383427021539	0.321457178938099	0.63315055191495
Merged-chr10-99179772-4	chr10	99179641	99179841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	71606.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	7.53257871458103	7.71979477034695	8.13209502560106	8.00563475372813	7.60988088322114	7.50672643036867	8.0334426825908	7.68846457929293	-0.191972341316931	0.360669327147026	0.665936747041206
Merged-chr17-26012311-4	chr17	26012235	26012435	+	936.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162869, intron 5 of 14)	intron (NM_001162869, intron 5 of 14)	9525.0	NM_153140	215445.0	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	5.00991268482593	4.59619469272636	4.51924759386495	4.85408108507773	4.95493550249228	4.97965636481764	4.58730115159225	4.90969388537173	0.21370757659628	0.542980749357858	0.794132217443555
Merged-chr2-69664230-4	chr2	69664137	69664337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028284, intron 9 of 11)	RSINE1|SINE|B4	-5883.0	NM_001081087	228003.0	Mm.178784	NM_001081087	ENSMUSG00000075307	Klhl41	Gm112|Kbtbd10|SARCOSIN	kelch-like 41	protein-coding	6.0707034791769	5.7837171239189	6.88921136466244	6.76063312829509	6.52762054888589	6.4452623968636	6.87830528306378	6.72785863289283	0.276311907836892	0.362914466313286	0.668146727994242
Merged-chr7-51892805-4	chr7	51892700	51892900	+	802.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330607, intron 2 of 7)	intron (NM_001330607, intron 2 of 7)	13833.0	NM_001330607	14453.0	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	3.89925698392871	4.12792395655782	4.30693486121416	4.56014110480851	4.21012734620867	4.34368532865843	4.75186917554088	4.06510242377239	0.253078414883446	0.575996333482431	0.813323871152889
Merged-chr10-77971321-4	chr10	77971238	77971438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1466.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	6.08379621821415	5.75738791903543	6.0848709937223	6.32236270184143	6.22747185684817	5.93638290603759	5.90191608363772	6.12094183679	-0.0466733422662339	0.85724778599354	0.946239174364937
Merged-chr13-21716829-4	chr13	21716731	21716931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178206)	promoter-TSS (NM_178206)	419.0	NM_178182	319191.0	Mm.14767	NM_178182	ENSMUSG00000071516	Hist1h2ai	H2a-291A	histone cluster 1, H2ai	protein-coding	6.79214498640132	6.67990744765317	6.66253022594035	6.3621832607107	6.8975035457639	6.64135547601141	6.73100277362508	6.85563743346342	0.247251747137667	0.252265136616295	0.563584315159659
Merged-chr2-164878720-4	chr2	164878653	164878853	+	989.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146129)	promoter-TSS (NM_146129)	-615.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	4.95262545883431	4.50245708600243	4.74391044151373	4.65583923788148	4.86770106320712	4.79968281503032	4.56147481562924	4.95006717956234	0.187173020111154	0.590495027395635	0.821000549250899
Merged-chr7-102244057-4	chr7	102243944	102244144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	6074.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	6.18248811607905	6.08675206855971	5.81640280506956	5.96221771419347	6.06943059636532	5.96812592658712	6.18860241243096	5.76123549702939	-0.00950457115793792	0.969560959553057	0.989034602712618
Merged-chr16-42895922-1	chr16	42895822	42896022	+	793.0	f0_balb.idr	intron (NR_040402, intron 2 of 3)	Charlie7|DNA|hAT-Charlie	-11723.0	NM_001285805	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	3.1444001767752	3.35475896412863	3.83588033531667	3.77019154163227	3.2832323369519	3.70926838522496	3.40416238848441	4.03834379725054	0.258367419042368	0.666749159245598	0.862118979153907
Merged-chr5-33219348-4	chr5	33219229	33219429	+	989.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1091.0	NM_133903	100689.0	Mm.34694	NM_133903	ENSMUSG00000037379	Spon2	2310045I24Rik|AI504350|M-spondin|Mindin|Mspondin	spondin 2, extracellular matrix protein	protein-coding	5.11513432112087	5.30168890118706	5.35958851462687	5.35738690731651	5.00157911479431	4.99491705164673	5.35991626959358	5.0785385658966	-0.332964987509199	0.271736620903645	0.583313117889454
Merged-chr10-8741187-4	chr10	8741081	8741281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 14 of 19)	intron (NM_175155, intron 14 of 19)	144889.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.51838403707968	5.58479366213614	5.305275064064	5.76864519539025	5.26622326594806	5.77572415085601	5.85357901064898	5.76951586484795	0.177888589708935	0.550857908645531	0.79871086511744
Merged-chr16-55975104-4	chr16	55975005	55975205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027965)	promoter-TSS (NR_027965)	-488.0	NR_027965	66391.0	Mm.472722	NM_133677	ENSMUSG00000102101	Zbtb11os1	2310061J03Rik	zinc finger and BTB domain containing 11, opposite strand 1	ncRNA	6.82926233590304	6.83556876918745	6.75896572701452	7.08137205659249	6.97666669348157	6.92097144990893	6.8231845316749	6.72440986883196	-0.0383455379327513	0.850878018556079	0.94375183545126
Merged-chr9-103425123-4	chr9	103425032	103425232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001002896, exon 7 of 7)	3' UTR (NM_001002896, exon 7 of 7)	1554.0	NR_040466	100529079.0	Mm.437003	NR_040466	ENSMUSG00000086236	5830418P13Rik	-	RIKEN cDNA 5830418P13 gene	ncRNA	5.98069166738948	6.15997990494577	6.2478386619269	6.00704853712499	6.30048499415633	5.9639355255967	5.8075644950443	6.53751716682032	0.139796886714108	0.596533382027318	0.824766901039635
Merged-chr12-105962827-4	chr12	105962732	105962932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-47431.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	5.77746716769845	5.45816027969429	5.50255132882354	5.61906048695456	6.13175803123232	5.77033728753185	6.12925465912723	6.38936872468102	0.851868102854256	0.00126696235364886	0.0162635010586785
Merged-chr17-32546070-2	chr17	32545970	32546170	+	706.924988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356302, intron 6 of 11)	L1_Mus3|LINE|L1	9513.0	NM_001356303	70101.0	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	3.37550799906726	3.58096334459186	3.54688756873185	2.84912410154709	3.18523339788677	4.00099295789261	3.58322444372854	3.31207533241824	0.600304432130586	0.331372582095682	0.642517464690907
Merged-chr11-53771494-6	chr11	53771376	53771576	+	817.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159393, intron 2 of 9)	intron (NM_001159393, intron 2 of 9)	1003.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	3.94646858159966	3.6560478882124	3.90052188338965	3.54326717299442	3.71955180444739	4.02278154214202	3.83573021646758	3.74761786735319	0.218091264563629	0.641019260528801	0.848560720572429
Merged-chr6-8617548-2	chr6	8617448	8617648	+	756.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97490.0	NM_001286729	170772.0	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	2.67938411059435	2.40600376277529	2.67967698886015	2.65748960213073	2.65188380880788	2.98584408810606	3.13061474144562	2.98822517475047	1.54605196583951	0.0231880927658585	0.141091909882602
Merged-chr10-59236127-4	chr10	59236023	59236223	+	982.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14201.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	5.47459555768881	6.04987728583786	5.61537541787031	5.32738420572819	5.92942602966593	5.96208672843896	5.61294515171439	5.13696167333069	0.104638232983295	0.752999023345494	0.902713603306311
Merged-chr1-51938951-1	chr1	51938851	51939051	+	934.0	f0_balb.idr	Intergenic	Intergenic	-22973.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	2.99167640820226	3.22564273540395	3.29804275658908	3.23378334565575	2.38749058276616	2.53336093662906	2.58435074219924	2.51034180605481	-5.32195401193022	1.8676523288927e-06	6.16022359213409e-05
Merged-chr11-54866522-5	chr11	54866452	54866652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008248, exon 1 of 3)	exon (NM_008248, exon 1 of 3)	169.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	6.24922367766926	6.3584443571679	6.64783092069529	6.01457114575214	5.92318655323041	6.11065147047971	5.87830087113032	6.28272287832234	-0.414454898767621	0.112914425816734	0.371420623567672
Merged-chr1-165193468-4	chr1	165193321	165193521	+	943.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151711, intron 1 of 6)	intron (NR_151711, intron 1 of 6)	1012.0	NM_145512	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	3.71684366487678	3.91515517859764	4.2894592119753	4.07690979527669	4.04688192241567	3.83712236173727	3.81693961170959	4.28661169572596	-0.0133781187555701	0.976759747320867	0.991709440769007
Merged-chr18-32818735-4	chr18	32818649	32818849	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021367, intron 4 of 4)	intron (NM_021367, intron 4 of 4)	1889.0	NR_033206	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	5.27189124033354	6.05146230516372	6.13768539767291	5.03929114773927	6.27797257380107	6.23591507235402	5.84129526919569	5.40630717117967	0.448038775582941	0.232292804134292	0.541932792706483
Merged-chr3-108997485-4	chr3	108997378	108997578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163567, intron 2 of 10)	intron (NM_001163567, intron 2 of 10)	30129.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	5.26425676014913	5.11545330525553	5.56237080660855	5.93842550249246	5.49527037281042	5.30476337969047	5.97330903519239	5.476386259022	0.100285332270885	0.768726512002537	0.90939721515425
Merged-chr12-51971392-4	chr12	51971307	51971507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177171)	promoter-TSS (NM_177171)	-86.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	7.78264401196584	7.74461032048522	7.64773719751976	7.37503508213332	7.59097261954213	7.84181688039239	7.77604050888967	7.51803998775114	0.0630647140541896	0.738382776979909	0.89672014039935
Merged-chr14-103342062-4	chr14	103341927	103342127	+	980.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207215, intron 1 of 84)	intron (NM_207215, intron 1 of 84)	4773.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	4.30865275481449	4.58585034073463	4.80042308400452	4.73114062209649	4.44605313282762	4.75077897130933	4.47438199029848	4.69110346828964	-0.0808100309240332	0.826701457575509	0.933509685869233
Merged-chr13-85441818-1	chr13	85441718	85441918	+	844.6666869999999	f0_balb.idr	Intergenic	MurERV4_19-int|LTR|ERVK	-152332.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	3.43078957339602	3.32977330156958	3.38222959404591	3.51415063170557	2.70815364903587	2.9383774368556	2.74496717752465	3.10204758462579	-2.4711747089636	0.000286042893232855	0.0048813793929765
Merged-chr10-40301508-4	chr10	40301451	40301651	+	987.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009665, intron 1 of 7)	CpG	635.0	NM_007444	100041585.0	Mm.476925	NM_007444	ENSMUSG00000063953	Amd2	AdoMetDC|Amd1|Amd3	S-adenosylmethionine decarboxylase 2	protein-coding	5.00767623292864	4.78276122930263	4.83734663213506	4.87530820214407	4.90075883075367	4.77334460822595	4.77759434617701	4.90532695417575	-0.0647568150312366	0.84075326727168	0.939409995734574
Merged-chr7-30669446-4	chr7	30669338	30669538	+	740.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2167.0	NR_027849	74927.0	Mm.87326	NM_183108	ENSMUSG00000049761	Pmis2	1700071L20Rik|4930479M11Rik	Pmis2, sperm specific protein	ncRNA	3.80315644175203	3.97477540536701	3.7515324239836	3.39306944733316	3.92557036664433	3.75930783071215	3.88506857951119	3.89972679994254	0.397103994261976	0.406278199231102	0.702813973926921
Merged-chr17-5174609-3	chr17	5174508	5174708	+	872.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	179534.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	3.38946081999682	3.42831773235925	3.26291481691202	3.81611760355659	3.42989126893607	3.56417902061166	3.43624845039405	3.88349227422217	0.26252386117794	0.633745289841032	0.844854814866136
Merged-chr1-165669105-4	chr1	165669014	165669214	+	980.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-34573.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	5.17934427892452	5.33489410529533	5.08309061681205	5.09803803441661	5.3595316775114	5.0015771337793	5.24416843390511	4.73500749566199	-0.10368246039186	0.750387803393693	0.901747852063193
Merged-chr2-167804436-4	chr2	167804262	167804462	+	933.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113185.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	3.56567629905969	3.46740061486843	3.40825285352284	3.18394362293215	3.24246454553769	3.27498587200869	3.33840123941936	3.65919604234854	-0.0607850851592263	0.910306568053266	0.966671146059764
Merged-chr7-80439523-2	chr7	80439410	80439610	+	686.75	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-34074.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	3.71366954767266	3.23533794734151	3.5334321249708	3.82034526797511	3.99158321124783	4.1853531827388	3.80626892022504	4.32724807525491	1.35741320594796	0.00926988401468082	0.0747542779327064
Merged-chr11-54787713-4	chr11	54787596	54787796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178626)	promoter-TSS (NM_178626)	7.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	7.73202152990831	7.68613724184286	7.44362879066053	7.3521792807079	7.63682703419602	7.71600809133275	7.53757571200557	7.78171309619741	0.151343025357707	0.411204233591628	0.706607748124631
Merged-chr1-136573686-3	chr1	136573591	136573791	+	804.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51210.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	3.27725597421202	3.32107950967944	3.39661871115466	3.0944896192937	3.32790858892965	3.11577051177095	3.92281871401733	3.5547601778374	0.830786551756494	0.141862397394155	0.419040693203243
Merged-chr5-143472205-4	chr5	143472079	143472279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 2 of 14)	intron (NM_144915, intron 2 of 14)	7686.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	5.60794491116948	5.17736458138729	5.21879822007023	5.54473260877334	5.27269808960289	5.48728665835336	5.05677798346461	5.36861615944758	-0.19077061412707	0.529977734354526	0.786098298608418
Merged-chr10-41839114-3	chr10	41839014	41839214	+	808.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	28540.0	NM_001162908	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	3.7701386861933	3.89083188332629	3.7254836453762	3.42613613077214	3.3970639589271	3.11787869383574	3.27960848289805	3.22342758157836	-1.54900712311751	0.00630559376578322	0.0562508909205018
Merged-chr2-132180576-4	chr2	132180476	132180676	+	918.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35256.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	4.64432642953918	5.31425379214159	5.02831256714032	5.08994541219226	4.51864391562096	4.63905129481252	5.03604625918331	5.36991598767231	-0.219858168642072	0.57071132975066	0.81018968611422
Merged-chr16-21389286-4	chr16	21389180	21389380	+	935.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-33838.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	4.83738875394762	4.41553824581421	4.52385256355529	5.03234959600522	5.06385154042237	4.51383031747995	4.706922700358	4.72606272689498	0.0778475770649245	0.840702335320005	0.939394224984579
Merged-chr13-58475649-3	chr13	58475554	58475754	+	945.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72311.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	4.50083380056925	4.88950552136627	4.32489773149358	4.03851844472758	4.35274457625948	4.99597946495981	4.2086868843258	4.4133929098542	0.118324311431679	0.79244242816323	0.919610988558604
Merged-chr6-49008171-4	chr6	49008062	49008262	+	737.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8546.0	NR_126454	75347.0	Mm.207324	NR_126454	ENSMUSG00000107656	4930563H07Rik	-	RIKEN cDNA 4930563H07 gene	ncRNA	3.87711632312923	4.04379537978781	3.77281012123703	3.82219817116849	3.81686909338188	4.04843425606215	3.95771621592825	3.92487966004161	0.149678766636892	0.730318577913479	0.893000516342052
Merged-chr18-24652789-4	chr18	24652698	24652898	+	839.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026779)	promoter-TSS (NM_026779)	-893.0	NM_026779	68591.0	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	3.89851595341267	4.08589898349295	3.68602996227328	3.50744166371318	3.91931634068627	3.86286728065147	3.9300830214008	4.03601891768233	0.385828734116588	0.408483726288016	0.70438176546703
Merged-chr9-16312856-4	chr9	16312751	16312951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	65380.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	6.17788307842988	6.02195544021374	5.85499036212843	6.61297021438797	5.73478022185572	5.98253488862856	6.06912392575765	5.87518593192516	-0.476064304865401	0.0891371435444578	0.325740677866603
Merged-chr18-50034157-3	chr18	50034050	50034250	+	937.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360935, intron 1 of 1)	intron (NM_001360935, intron 1 of 1)	3166.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	3.88661212483164	3.73241206345736	3.83935605631956	4.13719211752346	3.78961668999613	3.62385218455009	3.91588698000279	3.30413539134784	-0.688642211593516	0.17814025400028	0.47385347507328
Merged-chr3-88677535-4	chr3	88677434	88677634	+	897.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-8253.0	NM_028814	74200.0	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	4.46534792542773	4.73164056943458	4.2297745467601	4.46750790985344	4.71295178366868	4.63968240173972	4.44596521835792	4.69899754276281	0.316262305437189	0.389855926389235	0.690126025603507
Merged-chr5-124715301-4	chr5	124715202	124715402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011596, intron 14 of 19)	intron (NM_011596, intron 14 of 19)	-9783.0	NM_019536	56087.0	Mm.261014	NM_019536	ENSMUSG00000038011	Dnah10	Dnahc10	dynein, axonemal, heavy chain 10	protein-coding	7.3026081535276	7.40617712119293	7.0706549002257	6.97467765224116	7.26351082489791	7.19806558200081	7.23675766741957	6.8094499652545	-0.0684595921255003	0.746717637453244	0.90024753923246
Merged-chr10-8743058-4	chr10	8742961	8743161	+	928.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 12 of 19)	intron (NM_175155, intron 12 of 19)	143009.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.93158598852625	4.77895658981262	4.1074387551672	4.64288321176713	4.0823538289985	4.9159157564661	4.54520257801268	4.52468870694589	0.283229040463594	0.550068467418577	0.798363105957892
Merged-chr6-65144255-2	chr6	65144155	65144355	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 1 of 5)	(CA)n|Simple_repeat|Simple_repeat	475.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	4.0744294043136	3.86865801279573	3.77054396500796	4.06753034035225	4.17244139103156	3.8314867859411	3.8115545652711	4.31754338017293	0.263176095578356	0.559992435283596	0.804174263629324
Merged-chr10-117145825-8	chr10	117145760	117145960	+	902.9345089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 1 of 9)	intron (NM_177798, intron 1 of 9)	2614.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	4.1960297013723	4.22168844157941	4.24240127161719	4.1041341534099	4.19272240446843	4.41340686465251	4.35043606809095	4.28390823147518	0.303419548030906	0.430649667222898	0.721184186506179
Merged-chr17-71158385-2	chr17	71158285	71158485	+	682.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25147.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	2.79730879179438	2.6476160053046	2.73809444119623	2.68290194543376	2.66103138800868	2.40981830083799	2.78691402007055	2.73671333034512	-0.285640060463305	0.671227473952799	0.864591030917233
Merged-chr5-21658818-4	chr5	21658714	21658914	+	931.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026034, intron 4 of 5)	intron (NM_026034, intron 4 of 5)	12830.0	NM_026034	67211.0	Mm.260782	NM_026034	ENSMUSG00000038525	Armc10	2810037C14Rik|Svh	armadillo repeat containing 10	protein-coding	4.31107559046851	4.37613191737511	4.68664626862802	4.38974473814082	4.95859478815551	4.6234396941533	4.66412868920305	4.15597365894759	0.438626770134588	0.272979194447938	0.584406690338791
Merged-chr17-29381645-4	chr17	29381546	29381746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20732.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	6.71377038241011	6.72149020283789	5.94626198010605	5.67863624001784	7.16196362691219	7.01467661208153	6.93894120974294	6.50733950775883	0.845792940497777	0.00614721749837537	0.0552465649389975
Merged-chr10-93095987-4	chr10	93095890	93096090	+	978.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-14394.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	5.31708065600007	4.76583965894544	5.2273036118457	5.11713827502362	5.14720049663627	4.96588241079982	5.59780556132352	5.66735844729593	0.467837485786108	0.167921881154446	0.459915036621355
Merged-chr7-139978740-4	chr7	139978634	139978834	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347613)	promoter-TSS (NM_001347613)	21.0	NM_001347614	381933.0	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	5.03465201921868	5.35523000931921	5.13773998947539	5.4594233045032	5.1866491453066	4.94081175642374	5.42701464357533	4.8415892068798	-0.274430125084939	0.403357618531865	0.700736891767051
Merged-chr17-63871164-1	chr17	63871064	63871264	+	826.0	f0_balb.idr	intron (NM_001037997, intron 1 of 18)	B4A|SINE|B4	-6902.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	3.14980780804489	3.18225227356729	3.62046364124423	3.51225507771245	3.58774500351613	3.68745310572699	3.33465928747837	3.66657909366498	0.617223072740385	0.253834822056384	0.56509269693652
Merged-chr14-60757898-4	chr14	60757819	60758019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033272, intron 11 of 12)	intron (NM_001033272, intron 11 of 12)	-10215.0	NM_183175	239126.0	Mm.319636	NM_183175	ENSMUSG00000071347	C1qtnf9	9130217G22Rik|CTRP9|Ciqtnf9	C1q and tumor necrosis factor related protein 9	protein-coding	5.6297009833815	6.06608845303368	5.60451868778175	5.40785552301936	5.63271853330266	5.85549098704905	5.43761859211766	5.27095005380911	-0.212674790841041	0.488791221726725	0.761440142089832
Merged-chr1-153434009-4	chr1	153433912	153434112	+	914.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033162, intron 3 of 9)	MTD|LTR|ERVL-MaLR	8803.0	NM_001033162	71836.0	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	4.5564341617099	4.5880574443157	4.29850009950316	4.6074953374059	4.32500870322971	4.42566844011084	4.41421892204866	4.73450549089998	-0.106366224636359	0.776838404103849	0.913015118902433
Merged-chr7-141266542-4	chr7	141266511	141266711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252600)	promoter-TSS (NM_001252600)	-187.0	NM_001252600	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	6.00487997966427	5.64106589553706	5.73018244578858	5.73631443900358	6.03458180833789	6.00388913576629	5.93349924357077	5.72613516917992	0.250849057478498	0.322299050120958	0.633884780430485
Merged-chr10-96646292-4	chr10	96646218	96646418	+	984.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29317.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	5.0100825845209	5.33202212709477	5.23805444340827	5.26569514056754	5.43003413397989	4.95752015287991	5.02158356971388	4.73191352525049	-0.26644288555157	0.428329229374714	0.719363083801207
Merged-chr2-14340578-4	chr2	14340511	14340711	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47787.0	NM_001012305	277468.0	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	6.24573307781229	6.23972715760216	6.24685505845677	6.655357663647	4.98563515403364	5.38531148210244	5.57252932935375	5.68108722451252	-1.54947379816157	9.85611749923717e-08	4.22874374610128e-06
Merged-chr4-137815671-3	chr4	137815570	137815770	+	742.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-19286.0	NM_007431	11647.0	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	3.58148229924455	4.0830488264946	3.58196474075301	3.91151457716608	4.00874092195952	3.23575503579544	3.26094448175542	3.40228240091686	-0.850596373463094	0.16366197657355	0.453438785198268
Merged-chr7-24903335-2	chr7	24903235	24903435	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130151, intron 1 of 29)	PB1D10|SINE|Alu	349.0	NM_001130151	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	3.72807017133532	3.81752104627055	3.62713935545358	3.58969106607448	3.55173839656865	3.57291490486774	3.50393898049715	3.57129387457851	-0.44417772077324	0.353184415282793	0.660101709258846
Merged-chr2-165361084-2	chr2	165360983	165361183	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005425, intron 1 of 4)	MER20|DNA|hAT-Charlie	1036.0	NM_001005425	381405.0	Mm.296323	NM_001005425	ENSMUSG00000056824	Zfp663	Gm1008	zinc finger protein 663	protein-coding	3.25214871444096	3.49569658333927	2.91699094264509	2.99430595195407	3.24900787989863	3.68660761792414	3.18019333764007	3.30888035407402	0.668663976996943	0.260676183028142	0.57252299176491
Merged-chr17-26505605-4	chr17	26505542	26505742	+	974.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013642)	TTS (NM_013642)	2830.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	4.44895582300654	4.88162134035553	4.66350100981395	4.60065164788504	4.57143703958972	5.17518064003445	4.42995710017638	4.66044101547986	0.161665893515668	0.672695936243534	0.865323743916552
Merged-chr8-70342376-4	chr8	70342245	70342445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030680, intron 3 of 23)	intron (NM_030680, intron 3 of 23)	10934.0	NM_030680	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	5.31523719461138	5.20884379192546	5.69007106440407	5.15030845384306	5.72180139937894	5.58055545542749	5.19382771536905	5.45891175463427	0.291976706498277	0.342809222304797	0.6516462545027
Merged-chr6-29360388-4	chr6	29360282	29360482	+	953.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_184053, intron 2 of 6)	intron (NM_184053, intron 2 of 6)	12276.0	NM_007594	12321.0	Mm.392075	NM_007594	ENSMUSG00000029767	Calu	9530075H20Rik	calumenin	protein-coding	5.48584664706993	5.34448107259539	5.61185438307607	6.04292351227336	4.52147418689881	5.15765948183957	4.9525097014057	5.18854051959337	-1.26971148179819	0.000291555083887424	0.00495880509343439
Merged-chr7-5101476-4	chr7	5101410	5101610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15401.0	NM_001145013	192658.0	Mm.28764	NM_138954	ENSMUSG00000035191	Rfpl4	D7Ertd486e|Rfpl4a	ret finger protein-like 4	protein-coding	7.29942037056279	7.39314663262269	7.70500513763997	7.78007807756106	7.38249024296619	7.388505399445	7.64365046394107	7.38955034346646	-0.15206485537446	0.442876129322064	0.729608850831255
Merged-chr11-79870604-4	chr11	79870469	79870669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91818.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	6.16120467366603	6.47954728861849	6.69632659333755	6.4329187741904	6.25439333526224	6.29729769298005	5.92959831626985	6.33229205653461	-0.362282121716544	0.13204496509258	0.404546488629309
Merged-chr2-5811168-1	chr2	5811068	5811268	+	608.0	f0_balb.idr	intron (NM_133837, intron 6 of 12)	intron (NM_133837, intron 6 of 12)	-33866.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	3.2815486946822	2.95436001517484	3.2290246644519	3.10102351093672	2.80028646541626	3.10253796872147	2.84745992481497	3.33083742007397	-0.44373111155332	0.473611402843519	0.751276228650354
Merged-chr1-181211539-4	chr1	181211337	181211537	+	996.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145514, exon 1 of 14)	exon (NM_145514, exon 1 of 14)	541.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	5.20383063111285	5.17852501218874	5.23572038244426	4.66342291417149	4.93745411080251	5.40952029153107	5.48162625751672	5.32065673880889	0.414671798022991	0.222551435202145	0.530621200281373
Merged-chr14-22814850-1	chr14	22814750	22814950	+	827.0	f0_balb.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-272052.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	3.73701150238666	3.45377656777957	3.63570632243059	4.14199545239283	3.52957252925663	3.45348534203409	3.76907960864792	3.33812327869199	-0.775969734013921	0.150926550784254	0.433957209173573
Merged-chr10-30778488-4	chr10	30778389	30778589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	24837.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	6.13339348771203	6.35978478011682	6.4097890453345	6.09679197428718	6.08209503144882	6.28981681975796	6.32675910654362	5.80471013277014	-0.168623569272873	0.497295371536942	0.766982020988234
Merged-chr11-32358598-4	chr11	32358502	32358702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177364, intron 1 of 12)	MIR|SINE|MIR	10791.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	5.74447368808512	5.40234877351116	5.33933488322839	5.47347734474103	6.02320506966052	6.0160084282203	6.20156820640281	5.92599142182959	0.897524626697667	0.00048246962457167	0.00750638369560369
Merged-chr4-134000944-4	chr4	134000828	134001028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026144)	promoter-TSS (NM_026144)	-64.0	NM_026144	67422.0	Mm.100290	NM_026144	ENSMUSG00000012117	Dhdds	3222401G21Rik|CIT|DS|HDS|W91638	dehydrodolichyl diphosphate synthase	protein-coding	7.22753582054168	7.54021139131269	6.92395624347936	7.02020243635383	7.56001008180478	7.78283240307007	7.39938209006095	7.69695443379216	0.558663072285768	0.00815580660011069	0.0680485474140521
Merged-chr14-47188889-4	chr14	47188785	47188985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008102, intron 1 of 5)	CpG	528.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	5.61015401224417	5.94850189076981	5.66510701566159	5.1609661060733	5.91564128254215	6.1630717705515	5.60984868847254	5.98534132816064	0.522144532272583	0.0843325150625266	0.315948423055718
Merged-chr12-21287479-4	chr12	21287377	21287577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018813, intron 1 of 17)	intron (NM_018813, intron 1 of 17)	1180.0	NM_018813	54451.0	Mm.356778	NM_018813	ENSMUSG00000054309	Cpsf3	-	cleavage and polyadenylation specificity factor 3	protein-coding	6.63945035720503	6.81993235859537	6.74943156525181	7.20754928345146	7.04574648112172	6.7174965110195	6.84191857222866	7.0704665665949	0.0558627630008728	0.805928360553017	0.925317663285668
Merged-chr15-91673174-4	chr15	91673082	91673282	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025730)	promoter-TSS (NM_025730)	-42.0	NM_025730	66725.0	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	4.96167642573644	5.17812597278565	4.96250184921104	5.01192158164393	4.81591745143194	5.36214788065406	5.25078051797252	4.68164949887661	0.0345989396658641	0.919292084244759	0.970285021467879
Merged-chr5-135468501-4	chr5	135468401	135468601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-73955.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	8.04990753120929	8.17891862412893	7.91751802562053	8.15643562979557	7.59374024437286	7.88009718293851	7.32072767362506	7.69715710676764	-0.582486866742399	0.00167305817288429	0.020337891154624
Merged-chr7-143650071-2	chr7	143649971	143650171	+	722.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023680)	promoter-TSS (NM_023680)	-407.0	NM_023680	79202.0	Mm.261384	NM_023680	ENSMUSG00000010751	Tnfrsf22	2810028K06Rik|C130035G06Rik|SOBa|Tnfrh2|Tnfrsf1al2|mDcTrailr2	tumor necrosis factor receptor superfamily, member 22	protein-coding	3.45018860356966	3.33062244079984	3.85056727265148	3.25660225367493	3.6301219304302	3.68087413720587	3.65040825606734	3.38899561769964	0.360854648520625	0.492016994969315	0.763302174677456
Merged-chr5-5243778-3	chr5	5243683	5243883	+	733.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 3 of 14)	intron (NM_011074, intron 3 of 14)	22285.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	4.00627646211019	4.22042200217198	4.05463783175126	4.03347159156765	3.83178831377162	3.73135772053044	4.24973779549241	4.09815933256101	-0.237640825344246	0.588777202462561	0.819887948627264
Merged-chr5-115533819-4	chr5	115533709	115533909	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-25658.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	4.67274788236307	4.71208370322995	4.87800290009718	4.61103857271931	4.53367169661823	4.13813969371971	4.31785238525979	4.63288046401547	-0.643287096823904	0.0887175361645988	0.325087542170398
Merged-chr5-140418787-4	chr5	140418676	140418876	+	979.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133916)	promoter-TSS (NM_133916)	-529.0	NM_133916	27979.0	Mm.21671	NM_133916	ENSMUSG00000056076	Eif3b	AL033316|AL033334|AL033369|AW208965|D5Wsu45e|EIF3-ETA|EIF3-P110|EIF3-P116|Eif3s9|PRT1	eukaryotic translation initiation factor 3, subunit B	protein-coding	5.3024520709812	5.29582464062519	5.13742512127643	5.3046297974042	5.55600532925357	5.5962310321407	5.04035173602598	5.86599536040683	0.495959029670192	0.108574184404202	0.363714320016316
Merged-chr15-58472542-4	chr15	58472440	58472640	+	930.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57072.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	5.22537694523131	4.84271280315202	4.55224111521853	5.32282014588189	5.15761469699351	5.03370017606511	4.90915070901253	5.27944996551471	0.125473354543155	0.725686972421001	0.890921883682774
Merged-chr4-15234778-4	chr4	15234666	15234866	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	-31054.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	5.08813639543944	4.76881754464701	5.02634260309031	4.97999143236532	4.54030139939504	4.79077144910065	4.90229234415039	5.02289408836304	-0.308894788614372	0.361839191308186	0.667116113609588
Merged-chr7-45704349-2	chr7	45704249	45704449	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016974)	promoter-TSS (NM_016974)	-898.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	4.51313029792728	4.28338784361629	4.55402574474993	4.1526343828607	4.811510642632	4.64561473482448	4.27323044554674	4.66428758712075	0.565561867353436	0.143409249314955	0.42170234474879
Merged-chr8-107403201-4	chr8	107403099	107403299	+	898.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008706)	promoter-TSS (NM_008706)	6.0	NM_008706	18104.0	Mm.252	NM_008706	ENSMUSG00000003849	Nqo1	AV001255|Dia4|Dtd|Nmo-1|Nmo1|Nmor1|Ox-1|Ox1|Qr1	NAD(P)H dehydrogenase, quinone 1	protein-coding	4.38293341128358	4.54392833391321	4.91762732397949	4.8582101316367	4.4451381931603	4.5117315380572	4.69396613412604	4.74926563357797	-0.223173598652008	0.549471313633673	0.798017111469724
Merged-chr10-111994431-5	chr10	111994329	111994529	+	941.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028608, intron 1 of 5)	L1MA7|LINE|L1	2835.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	5.28506014173943	4.89962316740371	5.13162428148052	5.51241641188826	4.91245195882014	4.8904480254539	5.25959274365933	5.39329943948762	-0.210200880120637	0.536242651876402	0.790269275097008
Merged-chr14-22808417-3	chr14	22808294	22808494	+	858.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-265596.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	3.58294630810473	3.55764529917693	3.84221481063889	4.0099526383911	3.72266820336681	3.44536356914869	3.91482435386686	3.63753340480263	-0.241329776996722	0.63137003625401	0.843388211517721
Merged-chr13-30702387-4	chr13	30702277	30702477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 4 of 7)	intron (NM_134068, intron 4 of 7)	42318.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	6.06996699047881	6.04165663766488	5.76450322587837	5.15277767093357	5.43810155890677	5.17862463156316	5.5885762283316	5.4166251090531	-0.643743860385214	0.054802893912918	0.24451922433571
Merged-chr19-3537897-4	chr19	3537798	3537998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164159, intron 1 of 21)	intron (NM_001164159, intron 1 of 21)	37851.0	NM_001360430	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	5.61146961172225	5.37429681736158	5.7354341922673	5.92950708936051	5.34831266269239	5.5933951062522	5.50467966126465	5.47232863438092	-0.371532114752085	0.193907348691251	0.49423946044885
Merged-chr4-154142364-4	chr4	154142257	154142457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021499)	promoter-TSS (NM_021499)	-15.0	NM_021499	59002.0	Mm.46508	NM_021499	ENSMUSG00000029029	Wrap73	2610044M17Rik|5330425N03Rik|Dd57|Wdr8	WD repeat containing, antisense to Trp73	protein-coding	7.35127874487348	6.97415049807621	6.83824184792265	7.16089435718298	7.32133658456687	7.4376530028875	7.33533282988426	7.09874988219793	0.279166527152918	0.168079649912177	0.460073119562332
Merged-chr7-12780488-7	chr7	12780356	12780556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4798.0	NM_001017955	232875.0	Mm.333573	NM_001017955	ENSMUSG00000070822	Zscan18	EG232875	zinc finger and SCAN domain containing 18	protein-coding	4.85017691168635	4.70165236770529	5.28699767942498	4.60372803295863	4.53336050145269	5.25930805864498	4.75179928131128	5.08426106927781	0.105033060098578	0.785248688800453	0.916435002431157
Merged-chr12-71015829-4	chr12	71015710	71015910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045055)	promoter-TSS (NR_045055)	13.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	9.14650257662424	9.31923854439624	9.22616692646259	9.09922470396244	9.19240875283295	9.48391841938781	9.23056331889284	9.02373750549516	0.0529469777242398	0.737062035491145	0.896242353113829
Merged-chr2-120100047-4	chr2	120099941	120100141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 4 of 5)	intron (NM_133838, intron 4 of 5)	54534.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	6.39446279037873	6.12460234660606	6.19171663685208	6.38693129202011	6.2176262814381	6.1507850163151	6.3964500808951	6.45759897502899	0.034789663213678	0.87932848848909	0.954839397134476
Merged-chr2-73039466-4	chr2	73039342	73039542	+	991.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58996.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	5.31709593453883	5.1868080330253	6.18401571044671	5.57797583125661	5.71087621538552	5.09464896803326	5.38326530547417	5.46460707479821	-0.313166909832621	0.372613640407753	0.676386604956396
Merged-chr8-120179185-4	chr8	120179068	120179268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1699.0	NM_001033980	436062.0	Mm.334852	NM_001033980	ENSMUSG00000042269	Fam92b	1700120B06Rik	family with sequence similarity 92, member B	protein-coding	5.77016235853126	5.87118138418493	6.40785775537628	5.60360629826209	5.60172062353542	6.01729064589149	5.47268014672536	5.40272355634402	-0.485534801371854	0.122751790730825	0.388309395690387
Merged-chr7-16931115-4	chr7	16931051	16931251	+	892.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7119.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	3.17794637641398	3.25014181343326	3.17829183164695	3.34553348222814	4.006308252867	3.35731133055998	3.46439192917583	3.52903283679299	1.26096422102724	0.022081987790079	0.136856643118891
Merged-chr11-117146299-4	chr11	117146197	117146397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 7 of 16)	intron (NM_001166507, intron 7 of 16)	31125.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	6.24863269259457	6.14442123314109	5.79481145130094	6.05891393158536	6.46328635229391	6.16393834291473	5.91201298511104	5.86650417815475	0.100217767893859	0.706736936773014	0.882215762445699
Merged-chr5-96919198-4	chr5	96919111	96919311	+	859.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2061.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	4.48142673056328	4.2551528571876	4.26161671925952	4.66247195514113	4.6168178475811	4.0606371676266	4.57638843099755	4.55768079001618	0.0869141137913021	0.830547480555804	0.93499882818844
Merged-chr12-91585457-4	chr12	91585354	91585554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175335, intron 2 of 8)	intron (NM_175335, intron 2 of 8)	4195.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	5.27101787687427	5.51225006714685	5.5296679499636	5.38383962297618	5.44342831193594	5.56660381328327	5.21413377554902	5.16945973686911	-0.116178169479969	0.687042765681549	0.872037964629308
Merged-chr10-86889791-4	chr10	86889679	86889879	+	991.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 41 of 68)	Lx8|LINE|L1	110774.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	5.63481469595668	5.23117690753047	6.65366528662571	6.67867838579269	5.20515691254128	5.0281010226176	5.60676138919587	6.00914578219255	-1.07541348020545	0.0996382261671731	0.346218223703981
Merged-chr15-25288049-4	chr15	25287940	25288140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125724.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	8.41388818814386	8.49382460570178	8.66471956273381	8.89163213617732	8.58750352953143	8.46433478837942	8.59439797848716	8.48698608432342	-0.127154939624761	0.453394383441437	0.737488847020096
Merged-chr7-18959593-4	chr7	18959473	18959673	+	678.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001029877, exon 4 of 4)	3' UTR (NM_001029877, exon 4 of 4)	-27951.0	NM_194064	378430.0	Mm.277153	NM_194064	ENSMUSG00000051965	Nanos2	nos2	nanos C2HC-type zinc finger 2	protein-coding	3.34756441305957	3.17810154285387	3.08817148699841	3.22060811397695	3.33678458398628	3.68374203658897	3.59802574307927	3.65901222339122	1.23323671718875	0.0185544090185715	0.121800634467666
Merged-chr17-33759922-4	chr17	33759822	33760022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008997, intron 1 of 4)	CpG	564.0	NM_008997	19326.0	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	6.97315406571645	7.04612605236966	6.83865101745995	6.878187621499	7.05975312362069	7.37383877608704	6.9644895390162	7.1818043285371	0.295880827077056	0.132320049593329	0.405042403178192
Merged-chr4-19576610-4	chr4	19576544	19576744	+	964.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025476, intron 1 of 9)	intron (NM_025476, intron 1 of 9)	1578.0	NM_025476	66302.0	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	5.69389011513208	5.04567438247547	4.8639307542798	5.14997467746274	4.92144707525285	5.07958735629069	4.58494434046013	5.10884742300115	-0.544258414380009	0.134046987736335	0.407670811685954
Merged-chr2-31062391-4	chr2	31062268	31062468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	34132.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	5.84219974643019	5.9324572930298	5.88977348335955	6.11318413541147	6.00964760831507	5.66972795823605	5.66369417887537	5.97373784999238	-0.179592107813027	0.485501485861214	0.759349088660037
Merged-chr8-124844681-1	chr8	124844581	124844781	+	549.5	f0_balb.idr	intron (NM_025615, intron 2 of 6)	intron (NM_025615, intron 2 of 6)	18348.0	NM_025615	66523.0	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	2.63306534450948	2.74031343710998	2.69385195003056	2.71848164094642	2.18287834209042	2.5365328030584	2.42648830788778	2.50223419959389	-1.68419035151157	0.0307652153944278	0.17008808569287
Merged-chr12-24697798-1	chr12	24697698	24697898	+	824.5	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-10456.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	3.50673353141459	3.92184706990703	3.7590693573632	3.76264192997068	3.26353721409969	3.30746056609224	3.31739284384096	3.38916991848301	-1.49189751478688	0.0045748119238436	0.044451037051801
Merged-chr8-75218130-4	chr8	75218028	75218228	+	886.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029182, intron 1 of 2)	intron (NM_029182, intron 1 of 2)	4184.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	4.52856931259034	3.81925122434042	4.44994767306787	4.81387401166535	4.13605601108254	4.25296827135025	4.54535775828224	4.48730564012179	-0.227386571618411	0.619457057412467	0.836603177928847
Merged-chr4-83289421-1	chr4	83289321	83289521	+	671.333313	f0_balb.idr	intron (NM_027238, intron 2 of 19)	intron (NM_027238, intron 2 of 19)	34768.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	3.60666905415899	3.54912491145145	3.27380689943993	3.64750351807122	3.25031261826465	3.56592818727167	3.32389743938815	3.39297547253563	-0.519722291820588	0.321509445274529	0.633178683838219
Merged-chr10-75744223-4	chr10	75744108	75744308	+	825.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 10 of 36)	intron (NM_172549, intron 10 of 36)	20149.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	4.02352258205289	4.219189921034	4.02410072987078	3.93940016917167	4.48138512570751	3.98514558668151	4.00737515150868	4.37244507843341	0.484300709208994	0.255250374441889	0.566852976271238
Merged-chr19-21272185-4	chr19	21272068	21272268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009551)	promoter-TSS (NM_009551)	-110.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	9.29462393267605	9.27805519510675	9.55414837117867	9.01895486292764	9.35693057313456	9.44786262295703	9.27293633287306	9.06216240329157	-0.00398916455645664	0.981486005753651	0.993404797775174
Merged-chr17-87379096-4	chr17	87378992	87379192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 19 of 19)	intron (NM_028639, intron 19 of 19)	48649.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	6.85071749000802	6.46511237242153	6.70181704362819	7.07680800765552	6.32493749858226	5.9989457891959	6.72402711532567	6.5912593882748	-0.524558522786266	0.0422627822498199	0.20852783708304
Merged-chr17-66123637-4	chr17	66123572	66123772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001348292, exon 1 of 27)	5' UTR (NM_001348292, exon 1 of 27)	152.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	6.65524000840026	6.67410062137895	6.86737378547789	6.65855502516408	6.45378284522996	6.72113468374229	6.6964936807905	6.7403088661817	-0.0898602736450335	0.665114738098017	0.861268409676152
Merged-chr12-111438083-1	chr12	111437983	111438183	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-4578.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	5.74657533534974	6.1642640733656	6.29090647630473	6.14935928130415	5.97148951702711	6.12443614760138	6.10966323184614	6.21378585109448	-0.00840574615657439	0.972752167585236	0.990182858115
Merged-chr9-44320314-4	chr9	44320149	44320349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027909)	promoter-TSS (NM_027909)	33.0	NM_001359259	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	6.82472771888332	6.87488374834749	6.70817318757795	6.78283179293498	7.22837065812787	6.93064641776127	6.92392371974486	6.92868546826268	0.307709131216214	0.121185611482939	0.385429796688657
Merged-chr17-80086650-2	chr17	80086550	80086750	+	853.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24382.0	NM_144802	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	2.73877637522399	2.74949690556114	2.8561587114124	2.69020338994968	2.51127110019044	2.64445434768277	2.6023985256703	2.67507031359238	-0.773735826422048	0.240377909130805	0.550870712287303
Merged-chr1-191073239-4	chr1	191073132	191073332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 4 of 5)	intron (NM_198654, intron 4 of 5)	10211.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	8.63310536853914	9.10399726586176	8.89437937371156	8.76809524947189	8.83849668244782	9.09127352543867	8.99712576166297	8.76145849512306	0.0813160925047157	0.63121935060367	0.843290989835019
Merged-chr4-124710002-4	chr4	124709908	124710108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4853.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	6.28223025998995	6.83480316811645	6.20504449221662	5.92952642577813	6.68769315366814	6.49703150630312	5.88111192044077	6.31621087916081	0.0472162255602719	0.875145454044898	0.95304506163403
Merged-chr13-93977286-5	chr13	93977103	93977303	+	898.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-80593.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	3.56538951216893	3.47938361154024	3.89352167404041	3.7328319453446	3.26684495547939	3.23860021729493	3.38269141247833	3.71462173847428	-0.882118042967469	0.0996710245285066	0.346274239485736
Merged-chr11-104469465-4	chr11	104469381	104469581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359634)	promoter-TSS (NM_001359634)	-620.0	NM_001359634	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	5.69627994640471	5.38270603489738	5.19568077469287	5.42901471520089	5.8432238552704	5.84640231987347	5.78389306779574	5.56511761101079	0.558223809895438	0.0414352698623132	0.206119825427153
Merged-chr13-58999811-4	chr13	58999720	58999920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	192123.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	7.50054337479382	7.45825644004502	7.2282238727833	7.54544106565076	6.72011178078098	7.11215729367326	7.00448569971006	7.24481281139799	-0.5696665019045	0.00520845403238092	0.0489674481007584
Merged-chr12-32489969-4	chr12	32489884	32490084	+	936.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111195.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	4.67450907062785	5.03533015772226	4.95654000101006	4.99162128794482	4.29892388996644	4.27933316680266	4.65334619107838	4.71091653293941	-0.929894384338091	0.0112492852154242	0.0858029224548524
Merged-chr3-65392654-4	chr3	65392551	65392751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026155)	promoter-TSS (NM_026155)	-98.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	8.69321403030993	8.6414447787929	8.62387040009377	8.73208781945859	8.57930753526031	8.78802503411123	8.7339141190889	8.45852262787567	-0.0386840605512922	0.799757230711777	0.922665648246429
Merged-chr5-124032312-4	chr5	124032183	124032383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177876)	promoter-TSS (NM_177876)	-23.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	6.19400774478407	6.53695237529789	6.17246258357983	6.47766836272472	7.2806263067017	7.47167550532069	6.92876708816966	6.9219775933427	1.13566859371086	1.20413823997578e-06	4.1505741299388e-05
Merged-chr2-68782771-4	chr2	68782563	68782763	+	893.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78778.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	3.06577785244194	3.01870278126963	3.06615006358521	3.02997769862861	3.24456103167465	2.97716269995553	3.16944554040604	3.18013715747692	0.429572777741009	0.440287419361505	0.727741310566664
Merged-chr14-47735516-4	chr14	47735424	47735624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347525, intron 39 of 39)	intron (NM_001347525, intron 39 of 39)	71768.0	NM_001347522	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	5.55310884137302	5.43471901500813	5.77228915242239	5.90939397555549	5.17486620749202	5.22130286294877	5.26409082776616	5.65176307000803	-0.615951649686185	0.0401449158785417	0.202227527764948
Merged-chr10-77902354-4	chr10	77902255	77902455	+	894.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145152, intron 1 of 1)	CpG	181.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	4.28032511287509	3.7219641589949	4.01744519776975	3.92473156009389	4.07441755440565	4.09082981727575	4.09332408785705	4.15346501277665	0.290123881913461	0.498548293104214	0.767700089885445
Merged-chr19-21736459-4	chr19	21736380	21736580	+	870.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41860.0	NM_001033759	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	4.23001180037218	4.65583423412297	4.1362144527558	3.89688316702369	4.41599807792139	4.49000442086465	4.1659470180019	3.86364039435949	0.00691059326735387	0.988044970832234	0.995370064932717
Merged-chr10-4388652-3	chr10	4388549	4388749	+	981.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033466)	promoter-TSS (NM_001033466)	-541.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	4.08021312661712	3.87044808640448	4.12787725238231	3.99345557895246	3.78802679683156	3.68268562743115	4.23943600154379	4.76258963490038	0.434379090005228	0.387992988940646	0.688790151530853
Merged-chr12-79193669-3	chr12	79193567	79193767	+	812.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MURVY-int|LTR|ERV1	-1812.0	NM_021557	17252.0	Mm.291799	NM_021557	ENSMUSG00000066441	Rdh11	2610319N22Rik|AI428145|AU045252|Arsdr1|C85936|CGI-82|HCBP12|M42C60|Mdt1|Psdr1|SCALD|UBE-1c1|Ube-1c|ralR1	retinol dehydrogenase 11	protein-coding	3.38365280225219	3.0561831702748	3.5746540908074	3.17856027018488	3.21849924008659	3.14119199930346	3.02163955392541	3.15805037187682	-0.634048977594544	0.273315351646432	0.584869829166375
Merged-chr19-53128671-4	chr19	53128556	53128756	+	908.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11787.0	NM_001164099	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	4.68570738635467	4.77893508395621	5.03950255180554	5.35761920911332	4.34141186650177	4.38979834232608	5.07399819704588	4.68340497313729	-0.722896343966206	0.0732624502237423	0.291424384960085
Merged-chr7-102496853-3	chr7	102496751	102496951	+	899.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-2078.0	NM_146840	258837.0	Mm.377714	NM_146840	ENSMUSG00000044824	Olfr545	MOR42-1|S50	olfactory receptor 545	protein-coding	3.70840904212341	3.51946221344511	3.70895595469768	3.75437482384767	3.26938356842479	3.42377166559843	3.69314067226265	3.6568385682773	-0.524399411753534	0.299858697856811	0.612126943178557
Merged-chr7-111083165-4	chr7	111083071	111083271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040131)	promoter-TSS (NM_001040131)	-141.0	NM_013507	13690.0	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	8.76791953505605	8.78444687724725	8.73582552895205	8.74189954813644	8.78275390918969	8.89656001336721	8.81713542412611	8.8320059973975	0.0922375414481833	0.501870824108616	0.769448365511349
Merged-chr5-146676689-4	chr5	146676579	146676779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-91440.0	NM_001359057	14738.0	Mm.153539	NM_008151	ENSMUSG00000041468	Gpr12	Gpcr01|Gpcr12|Gpcr20|Gpcr21	G-protein coupled receptor 12	protein-coding	6.40193058350965	6.7683075803387	6.40306127686191	6.89728719916679	6.67944483490254	7.12527329113156	6.8123292236222	6.8686883573205	0.312687862350049	0.181804553698037	0.478446672285694
Merged-chr3-15575839-3	chr3	15575744	15575944	+	886.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001173460)	promoter-TSS (NM_001173460)	-779.0	NM_001173460	668101.0	Mm.423523	NM_001173460	ENSMUSG00000095028	Sirpb1b	-	signal-regulatory protein beta 1B	protein-coding	3.38293143197776	3.48470688590765	3.63655913338079	3.6125611147167	3.21987515202053	3.55398001953957	2.91278665267736	3.06749770864728	-1.182966359285	0.0478510360236398	0.225643505041096
Merged-chr12-112673779-4	chr12	112673683	112673883	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331107, intron 1 of 13)	CpG	493.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	5.06745431962725	4.95148815292102	5.35401693989478	4.85912616255428	4.80972846705617	4.91804286492158	4.87330909269938	4.9295801612368	-0.349736592798275	0.289218709619447	0.601252115531934
Merged-chr4-63557470-4	chr4	63557357	63557557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1306.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	5.88243511225053	5.60387548431745	5.84123856814727	5.93881021562178	5.26288021919441	5.24753852445774	5.38254547211652	5.27878015360942	-0.923572043792582	0.000738659175305817	0.0105618765446149
Merged-chr6-134120880-4	chr6	134120780	134120980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	85180.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	6.11001932129647	6.52960119343948	6.55214049323797	6.33457270883593	6.43288661071685	6.71229381111259	7.06967052933288	6.69965812203407	0.50825558909374	0.0353761666450154	0.186632090544438
Merged-chr18-54853235-4	chr18	54853132	54853332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136948.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	5.8537247217319	5.44715767489059	5.89769219944187	5.95920028750956	5.19214709803964	5.36000530332686	5.80286786186757	5.58414705684069	-0.524277556370402	0.0791991513697184	0.304538728072237
Merged-chr4-133598893-4	chr4	133598783	133598983	+	908.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3285.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	4.80626061757119	4.8112155553593	4.87177108462662	4.58124177415214	4.30219819761558	4.24765565519259	4.4018880059674	4.37315908165787	-0.976328456758468	0.00842849353571421	0.0696461273947761
Merged-chr15-8442986-4	chr15	8442876	8443076	+	853.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 1 of 45)	intron (NM_201232, intron 1 of 45)	1487.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	4.16038758927646	3.6892265414706	3.94485405303115	4.25093019153327	4.20386593876286	5.09408049185965	4.56126252296642	4.30020534418379	1.27869644221782	0.00695581272271858	0.0606433765671008
Merged-chr17-10675231-3	chr17	10675131	10675331	+	892.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	ORR1E|LTR|ERVL-MaLR	164960.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	4.2806608855137	4.18037215409134	4.36548188491716	4.6748119274186	4.06378411652319	3.99872444161518	4.3850088046567	3.98749003021199	-0.707476783367192	0.0966488070726508	0.340574096588254
Merged-chr13-35665673-4	chr13	35665576	35665776	+	946.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009881, intron 1 of 9)	MIR3|SINE|MIR	5814.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	5.61137515964764	6.02475030339957	5.04494142786854	5.84849795829371	5.68614126920457	5.22722592680985	5.53223270443285	5.11819857543343	-0.461114227564838	0.179381598523229	0.47560913362456
Merged-chr12-69214550-4	chr12	69214439	69214639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011133, intron 6 of 18)	intron (NM_011133, intron 6 of 18)	13651.0	NM_011133	18974.0	Mm.9199	NM_011133	ENSMUSG00000020974	Pole2	-	polymerase (DNA directed), epsilon 2 (p59 subunit)	protein-coding	5.08260673344317	5.47243931356336	5.01067944451295	5.15042280991409	5.76343493949315	5.42579755201555	5.40151716167798	5.42487749679084	0.595007471093671	0.0482054008923697	0.226565610297702
Merged-chr2-24950326-4	chr2	24950220	24950420	+	874.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_147179, exon 1 of 6)	5' UTR (NM_147179, exon 1 of 6)	162.0	NM_147179	67187.0	Mm.296106	NM_026021	ENSMUSG00000026974	Zmynd19	2700064H14Rik|AA536891|AU014915|mizip	zinc finger, MYND domain containing 19	protein-coding	3.51449369244309	3.48313781741073	3.20425147913113	3.4523999106115	3.75582094458918	3.63087568677808	3.55484557830433	3.71702517159902	0.795915757487478	0.106016784052121	0.358726405782749
Merged-chr6-31191184-4	chr6	31191084	31191284	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 1 of 2)	LTR33C|LTR|ERVL	27290.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	4.18150602602383	4.28840186449925	3.85438128648255	4.36433663375932	4.47369593045684	4.57379668878309	4.25662745869502	4.44121500230448	0.568496566030957	0.164023558508692	0.453939387690334
Merged-chr8-18595568-4	chr8	18595461	18595661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173189, exon 1 of 14)	5' UTR (NM_173189, exon 1 of 14)	430.0	NM_173189	244329.0	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge	microcephaly, primary autosomal recessive 1	protein-coding	6.56702642777838	6.14823752186478	6.59895735805451	6.5963757062151	6.44463182518232	6.42810480434632	6.60983103040136	6.28585707606614	-0.068173279351821	0.766768733791233	0.908716130899153
Merged-chr3-54246633-4	chr3	54246538	54246738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253682, intron 3 of 11)	intron (NM_001253682, intron 3 of 11)	90581.0	NM_001253682	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	6.17143459724809	6.01973980998255	6.64128267347797	6.44568853689888	5.90539672661878	5.91087546838341	6.01798514539617	5.90776805421604	-0.632430765203745	0.0125998660234801	0.0929916877320024
Merged-chr7-141308830-4	chr7	141308709	141308909	+	968.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016874, intron 10 of 11)	intron (NM_016874, intron 10 of 11)	16803.0	NM_007878	13491.0	Mm.41075	NM_007878	ENSMUSG00000025496	Drd4	AW125663|D4R|Drd-4	dopamine receptor D4	protein-coding	5.18356708838346	5.16486089076921	5.30640231792473	5.13445095250921	4.98549543042789	5.38972902630273	4.91491511787668	5.53994117629322	0.0586051318716458	0.854683503521021	0.94527177305373
Merged-chr15-31613920-4	chr15	31613802	31614002	+	962.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356313, intron 5 of 5)	intron (NM_001356313, intron 5 of 5)	11786.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	4.94628230692895	4.66254559462494	4.98045035367772	4.9086917546524	4.78056187844043	4.86130490413981	5.01977184676232	4.76273304035861	-0.0456931139599659	0.889361855097861	0.958519732455951
Merged-chr16-16554565-4	chr16	16554461	16554661	+	970.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	5658.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	5.60043766456432	5.10103403969992	5.60142411610519	6.1186790424291	4.92003650847934	5.25273950028134	5.62262877951281	5.67177306571757	-0.467639859248403	0.197869565792231	0.499190395673255
Merged-chr10-87753737-4	chr10	87753651	87753851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104514.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	6.88345513314172	7.38080235205873	7.09722290440893	6.55107434848546	7.22222646774595	7.39399802682697	6.64376171640422	6.50170238848475	-0.0162160575586046	0.954440045378482	0.983764634562976
Merged-chr18-62046065-1	chr18	62045965	62046165	+	656.5	f0_balb.idr	Intergenic	L2a|LINE|L2	92990.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	3.70125869200818	3.55842925016551	3.49142809564698	3.62824345600094	3.63770784790037	3.48462379760036	3.42125611252506	3.74680903478749	-0.053865195621063	0.911911849963178	0.967058605013842
Merged-chr12-85220001-2	chr12	85219901	85220101	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145445, intron 2 of 7)	intron (NM_145445, intron 2 of 7)	520.0	NM_145445	217715.0	Mm.29041	NM_145445	ENSMUSG00000004788	Eif2b2	EIF-2Bbeta|EIF2B	eukaryotic translation initiation factor 2B, subunit 2 beta	protein-coding	2.72438339373208	2.58209654167019	2.43477316305403	2.57781839338909	2.93092875115266	2.89671176351078	2.83801749805345	2.96073060179678	1.54717844102949	0.0165249480290152	0.112353546256306
Merged-chr4-141646807-3	chr4	141646686	141646886	+	884.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	17329.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	2.96449862055083	3.01718415268535	3.0392311642111	3.18754096133428	3.57345044567168	3.47840681901561	3.45622122150077	3.90828121955374	1.93018323381899	0.00091699152187378	0.0125690686294514
Merged-chr15-58734770-3	chr15	58734655	58734855	+	774.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	88672.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	3.44258185561766	3.48848254261845	3.38909991534522	3.51050838541967	3.35331453224797	3.18880019373292	3.07091938621523	3.49278605868846	-0.61219502381621	0.257439432116158	0.569250985539994
Merged-chr3-69127131-4	chr3	69127024	69127224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008467)	promoter-TSS (NM_008467)	-32.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	8.3447751849244	8.49941190172166	8.64257631493578	8.46270650256001	8.49599703152274	8.61009485973676	8.77876481267748	8.41639631208654	0.11373427145023	0.483508015492145	0.757852925101633
Merged-chr5-54211950-4	chr5	54211843	54212043	+	985.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138049.0	NR_038045	330086.0	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13	predicted gene 10440	ncRNA	5.04249809612404	5.0934194604628	4.74074001523576	5.13633524692244	5.08686634188015	5.24924777788777	5.23331668548804	4.82012738217167	0.158885374270107	0.623179949553137	0.838922840312846
Merged-chr8-23207885-4	chr8	23207807	23208007	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018743, intron 1 of 12)	CpG	546.0	NM_018743	102247.0	Mm.200898	NM_018743	ENSMUSG00000031545	Gpat4	AU041707|AW545732|Agpat6|Tsarg7	glycerol-3-phosphate acyltransferase 4	protein-coding	5.16460142486211	5.14149648779471	5.13393284549028	4.95597885625872	5.06148303754992	5.17386311138726	4.97529647151541	5.19266834146848	0.0213059149087391	0.944025756860764	0.979899564874466
Merged-chr19-11119487-4	chr19	11119393	11119593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027058, intron 1 of 6)	intron (NM_027058, intron 1 of 6)	11385.0	NM_027058	69369.0	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	7.10210542655845	6.69899934185318	6.54359052300502	6.87499689495324	5.98921526034612	5.92805820005798	6.24411998956126	6.45600162683968	-0.963488144587094	9.6226895357141e-05	0.00196593977744717
Merged-chr5-105141313-2	chr5	105141213	105141413	+	684.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1727.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	2.67348416264593	2.60275275903755	2.94131157747612	2.45652758039188	2.95974266569484	3.11390019995128	2.9881941218153	3.10963218883548	1.74214891128333	0.00713065079241118	0.0617686007974973
Merged-chr15-57926571-3	chr15	57926476	57926676	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356310, intron 3 of 19)	intron (NM_001356310, intron 3 of 19)	14377.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	2.96607468629657	3.1424919611699	3.09401537178935	2.97962425681596	3.37493112891841	3.14087686978132	3.25130564935694	3.09248963511886	0.711157939953596	0.200421869844499	0.502485838102051
Merged-chr18-60767145-7	chr18	60767040	60767240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7456.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	5.80793478702496	5.81440122623096	6.21344031488338	6.23043228711996	5.51925267221007	5.43252133764452	5.45719790608634	5.94034656901817	-0.715434538945172	0.0117211689939875	0.0883793525236267
Merged-chr7-97079327-4	chr7	97079211	97079411	+	814.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2440.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	3.90604860760999	3.79263695490584	3.59014232014761	3.83772212323117	3.97396204761953	3.76581766793275	3.69014393885317	3.90427447575623	0.155767656195303	0.7319705673118	0.893842682027583
Merged-chr11-44392699-3	chr11	44392606	44392806	+	893.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7357.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	4.52119245960919	4.55099238871949	4.41136735518768	4.37634126398105	4.03091214390898	3.83420699989977	3.98976948747594	3.77451328135706	-1.41451646044791	0.00092675067584674	0.0126608692842484
Merged-chr6-82822112-4	chr6	82821982	82822182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47628.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	5.749251878786	5.72695642634744	6.01270470686365	5.76999293207886	5.27399623009525	5.90043110906559	5.53942238495723	5.77024841701138	-0.311144914508782	0.270524198924729	0.582339622429786
Merged-chr11-63097450-4	chr11	63097336	63097536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31546.0	NM_001302258	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	5.11638021611745	5.49990958883296	5.44430400191549	5.43617793075656	5.90153143455907	5.22233721059899	5.67530979595764	5.7003246318286	0.465685565451734	0.11791676751121	0.379892984408118
Merged-chr12-70915360-4	chr12	70915268	70915468	+	902.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-22489.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	4.54659186759836	4.38685110958485	4.88996745890728	4.51121925956817	4.31375939410092	4.31318887426923	4.56452399085456	4.28327044126981	-0.498662518904528	0.194374966799039	0.494775802374165
Merged-chr18-38940671-2	chr18	38940571	38940771	+	741.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 4 of 4)	intron (NM_001033789, intron 4 of 4)	-21972.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	3.09239171214415	3.14169974542787	3.1527073639237	3.03867692526698	2.99114237517735	3.14001438740673	3.44689359024884	3.02855387857539	0.226936499192212	0.690664216272363	0.874049428217715
Merged-chr7-97355347-4	chr7	97355257	97355457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16260.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	7.13594169262719	7.42894451496569	7.31939557908219	7.16385416417806	6.89534725326697	7.08773456305638	7.29278872039085	6.80459600318704	-0.321390695902211	0.116659577856141	0.377974058547146
Merged-chr14-45351100-4	chr14	45351005	45351205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019637)	promoter-TSS (NM_019637)	-81.0	NM_019637	56291.0	Mm.202561	NM_019637	ENSMUSG00000053205	Styx	0610039A20Rik|hStyxb	serine/threonine/tyrosine interaction protein	protein-coding	7.88528219485415	7.82492282295012	8.08887286602208	7.92561285437303	7.90339093560717	8.0417937570757	7.99328482608403	7.79031258523031	0.00114407198045738	0.994483020907061	0.998030439403655
Merged-chr10-121961601-3	chr10	121961523	121961723	+	680.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	85692.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	3.29059833843644	2.9647359895626	3.42903666059045	3.21961160222797	2.6187736241157	2.78996942785107	2.59659314371108	2.75528587301159	-2.79139093128337	0.000201447373193022	0.00366011183290574
Merged-chr4-147904858-4	chr4	147904715	147904915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285922)	promoter-TSS (NM_001285922)	94.0	NM_001285922	170731.0	Mm.154312	NM_133201	ENSMUSG00000029020	Mfn2	D630023P19Rik|Fzo	mitofusin 2	protein-coding	5.96847229576082	6.19212411326246	6.07540653356753	5.61382405018118	5.89904316549002	6.18799683023913	5.64365814120545	6.22368543346681	0.0599813235328563	0.831062484569526	0.935229428612579
Merged-chr8-112011378-4	chr8	112011287	112011487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130868)	promoter-TSS (NM_001130868)	28.0	NM_020584	57321.0	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding	6.65115099111861	6.7405154315034	6.87230042298114	6.9168658278799	7.04683417204419	6.81360534555727	7.02381620379369	6.90713437478213	0.207739597599458	0.295657353691231	0.607593104815457
Merged-chr2-163918667-2	chr2	163918567	163918767	+	980.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183023)	promoter-TSS (NM_183023)	16.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	3.03512415812919	3.08567323966247	3.09496245806514	2.89434704381432	3.1892577744345	3.08155157607157	2.96338181655052	3.09334249125257	0.272403366522054	0.632693741394225	0.844069944497123
Merged-chr9-7556464-4	chr9	7556365	7556565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1964.0	NM_008611	17394.0	Mm.16415	NM_008611	ENSMUSG00000005800	Mmp8	BB138268	matrix metallopeptidase 8	protein-coding	5.99436079436743	5.45086496491166	6.18673667816754	6.04494970085295	5.93928569450848	5.51288810485288	5.85743156314062	5.60762191685298	-0.319958795985912	0.270706159715495	0.582484695960979
Merged-chr19-16130879-4	chr19	16130795	16130995	+	738.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1936.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	3.27444949049994	3.17441963809685	3.50652037717966	3.54239312662909	3.62626831315651	3.56710849925743	3.32493557050428	3.60623139342418	0.485015254335012	0.356756290019038	0.66317411451208
Merged-chr2-4446115-4	chr2	4445997	4446197	+	819.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	45121.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	2.99592423563746	2.90085621715677	3.39418999622262	2.7065630324278	3.0295356102404	3.10921942740965	3.51551575587939	3.05945700916504	0.677009891645525	0.286458284745346	0.598099623064415
Merged-chr17-87293326-4	chr17	87293214	87293414	+	913.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	10428.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	4.61056333115918	4.40833787036759	4.23806372015355	4.43169825804131	4.38350623215186	4.50370969738235	4.39753578829209	4.18656905835096	-0.132360662207633	0.727310381375323	0.891423086495076
Merged-chr9-119088616-1	chr9	119088516	119088716	+	1000.0	f0_c57.idr	promoter-TSS (NM_001293648)	promoter-TSS (NM_001293648)	-355.0	NM_001293648	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	6.56402403642336	6.43793591733343	6.70131935804915	6.05255008971641	6.4462784801602	6.65921311320072	6.85237727721984	6.65281129620839	0.310972096635837	0.204208084983171	0.507425868749117
Merged-chr17-5887029-3	chr17	5886925	5887125	+	950.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025664, exon 2 of 18)	exon (NM_025664, exon 2 of 18)	45645.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	4.21757639776717	3.95390727437897	4.64452038879119	4.7796565517307	3.49531618533873	3.63123241591466	3.56538782641628	3.70576618146208	-2.46698033904515	2.10202805432184e-06	6.83822005843576e-05
Merged-chr9-45296731-3	chr9	45296628	45296828	+	880.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22372.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	3.68088404194309	3.53769780168517	3.77545615422671	3.68115287606076	3.50830562892426	3.39675682673688	3.27393383954532	3.57779237481781	-0.736554945002556	0.143308433609846	0.421515504302858
Merged-chr12-116597170-4	chr12	116597079	116597279	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011215, intron 2 of 22)	MTE2a|LTR|ERVL-MaLR	111459.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	4.74183241562824	4.44067681208883	4.74262020967835	4.26493957490263	5.92422259075129	6.13355970746557	5.96438715021034	6.0099351403906	2.69971556709581	8.43010986059472e-20	2.72748540803305e-17
Merged-chr8-84856978-4	chr8	84856881	84857081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025648)	promoter-TSS (NM_025648)	-5.0	NR_152751	66590.0	Mm.292517	NM_025648	ENSMUSG00000003808	Farsa	0610012A19Rik|Farsla|pheRS	phenylalanyl-tRNA synthetase, alpha subunit	protein-coding	6.40605362333453	6.55428172873015	6.27960440064158	6.44823092343645	6.63714996741418	6.35697260894407	6.37439201442109	5.9241793111858	-0.102258829123817	0.677730229789923	0.867815982091561
Merged-chr2-34944914-4	chr2	34944837	34945037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009421, intron 10 of 10)	intron (NM_009421, intron 10 of 10)	16835.0	NM_009421	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	6.4359716023762	6.56639548873295	6.50368305227026	6.44704000914169	6.208279761264	6.56073909666734	6.59319436765655	5.96209116981253	-0.202795032522071	0.397780059799989	0.696054529321669
Merged-chr18-50036836-4	chr18	50036743	50036943	+	758.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360935, intron 1 of 1)	intron (NM_001360935, intron 1 of 1)	5859.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	4.71762339705125	4.74003000620985	4.85136009121171	4.67310558283576	4.58743063781471	4.1683496064377	4.33629077757911	4.03948896212744	-0.969275948226791	0.0145165121277182	0.102478442778724
Merged-chr11-76897987-4	chr11	76897875	76898075	+	956.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6570.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	4.4920998294989	4.446048981826	4.35873102542005	4.1265020737516	4.68459178177069	4.96375299961347	4.19187666349035	4.91796821925432	0.818212695250675	0.0398788278806307	0.201371672085373
Merged-chr17-57283991-4	chr17	57283906	57284106	+	950.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	4906.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	3.73045797349875	4.39625759493139	4.52964490185514	4.75738406970711	4.20505930726288	4.04569267934958	4.50801021337567	4.36820605608643	-0.287838737206527	0.545801038135661	0.795983610823412
Merged-chr1-87623884-4	chr1	87623806	87624006	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	3594.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	5.27086617537825	5.12900965852124	5.38072438360776	5.27863796872145	4.71184253376889	4.7040441802747	4.96136939789846	5.14885500189752	-0.729584399139225	0.0231167024050912	0.14083549245805
Merged-chr18-88861752-4	chr18	88861632	88861832	+	898.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32475.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	4.75209687254134	4.19404403969373	4.54095878249325	4.63551761441293	3.87578896670871	4.41528017481181	4.35705129528436	4.41707162034037	-0.641053095380083	0.127506506809337	0.397369375564266
Merged-chr7-19325986-4	chr7	19325875	19326075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15930.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	7.16481252406764	7.13977897515589	6.95154570847199	6.97369744173713	7.04012288944871	6.77155886104032	6.94203349495296	7.05842078358526	-0.129343090290003	0.505490871214571	0.771488881809541
Merged-chr11-8607343-4	chr11	8607242	8607442	+	912.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	57193.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	4.5078981018033	4.39114056443794	4.37507600173518	4.18253918652184	4.52718713923936	4.97823234599345	4.84963027093699	4.58755072840259	0.856862712779202	0.0202994510462165	0.129278925671531
Merged-chr11-100588694-2	chr11	100588594	100588794	+	979.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019795, intron 9 of 13)	PB1D10|SINE|Alu	12803.0	NM_001146318	12799.0	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	2.61634923804746	2.7393916141463	2.7601320144332	2.80894345460273	2.87117693791917	2.99872078648386	3.05001641988472	3.11381407144331	1.18413890402558	0.055696532950947	0.247019971270201
Merged-chr2-6748217-2	chr2	6748117	6748317	+	918.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-26555.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	3.14847816920183	3.04242039810971	3.20500404163534	3.35460929966698	3.15259458644874	2.92982956980308	3.13726872769067	3.02727699502273	-0.523429745480813	0.366495302521952	0.670904475842366
Merged-chr11-98864182-1	chr11	98864082	98864282	+	627.666687	f0_balb.idr	intron (NM_197940, intron 1 of 7)	intron (NM_197940, intron 1 of 7)	584.0	NM_197940	68524.0	Mm.28661	NM_197940	ENSMUSG00000038013	Wipf2	1110014J05Rik|5730509C05Rik|AA407487|Gm1176|Wich|Wire	WAS/WASL interacting protein family, member 2	protein-coding	3.54959779888996	3.59305500907366	3.60268635656963	3.40517706322087	3.17559693270404	3.55410130298484	3.42511567426151	3.79119548558555	-0.115761080423013	0.82609592730831	0.933284902702657
Merged-chr9-37146582-3	chr9	37146452	37146652	+	934.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 1 of 12)	CpG	770.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	3.55094474886199	3.60459602969035	3.55141693740827	3.84920707921372	3.40961638146189	3.61008765432148	3.59079981394675	3.54950724068347	-0.392879612402818	0.4264802267084	0.717934774185304
Merged-chr2-84460120-4	chr2	84460012	84460212	+	957.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355271, intron 2 of 8)	intron (NM_001355271, intron 2 of 8)	14062.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	4.58090521875861	4.97720124689174	4.79263619150203	4.94804182526722	5.02514151679612	4.71563565712345	5.21992650234181	5.06804122371319	0.349078344875074	0.30106086232762	0.612994478573963
Merged-chr10-75834527-4	chr10	75834418	75834618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010361, exon 1 of 5)	5' UTR (NM_010361, exon 1 of 5)	363.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	5.37608100473969	5.39953645625645	5.22102650458807	5.45002347063838	5.50563091136882	5.29440876415039	5.43513877251029	5.63694118493648	0.182929967364966	0.512665072714709	0.775958219974914
Merged-chr1-171551655-3	chr1	171551578	171551778	+	678.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7515.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	4.69248317598754	4.4569105872333	3.92244909137547	4.52853688719378	3.19602665902877	3.25818001192532	3.20883824562559	3.29668998670967	-4.61772529642529	2.58045703828908e-09	1.54089221080854e-07
Merged-chr4-136450519-3	chr4	136450423	136450623	+	953.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19238.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	3.76883004782403	3.37823686087457	4.15051868720585	4.08736129959787	3.52496351595447	3.41366528838973	3.4207316368856	3.66433787356914	-1.15864229690116	0.0318543643653474	0.174211433051177
Merged-chr10-69185568-4	chr10	69185451	69185651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23001.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	6.36041586849242	6.66167155719733	6.56614532467233	6.46422529066954	6.4013844884419	6.60939414375275	6.38309896738533	6.56146429953129	-0.0430844632413224	0.841128006269099	0.939525416908854
Merged-chr2-14236296-4	chr2	14236196	14236396	+	914.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 1 of 29)	(TTTTG)n|Simple_repeat|Simple_repeat	6882.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	4.14090490271318	4.36358200710263	4.14150163743508	4.62650483185161	4.42320045953891	4.41134711862287	3.90951007298767	4.52541561401736	-0.0254692184080816	0.95314161814736	0.983320469096829
Merged-chr14-30876984-4	chr14	30876890	30877090	+	830.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028839, exon 8 of 8)	3' UTR (NM_028839, exon 8 of 8)	-2267.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	3.97428338828895	3.86316788374117	4.02235272643782	4.17025972470083	3.88699934834578	3.94075774850271	3.95812575999593	4.01993206744209	-0.202103560288769	0.636969900552229	0.846506358316041
Merged-chr15-89180121-3	chr15	89179988	89180188	+	883.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	700.0	NM_001284506	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	3.04146311233305	3.16796700275489	3.16939909371371	3.11785613446449	3.34241769068358	3.28052189467324	3.42741773744838	3.28388289127683	0.785922489035446	0.137171371759003	0.411837364501977
Merged-chr6-34607978-4	chr6	34607877	34608077	+	982.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 1 of 13)	intron (NM_001347100, intron 1 of 13)	9473.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	3.93732606488818	4.59022823284371	4.48806195664099	4.2121751950845	4.51171549014211	4.66003918499997	4.58306124249998	4.56421777692938	0.572607533277013	0.14509997574189	0.424412211766262
Merged-chr10-22335629-4	chr10	22335539	22335739	+	832.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-26255.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	4.07608570812111	4.30353239137019	4.12272479064072	4.52621187428976	3.96131268679585	3.68676451783507	3.74616334274101	4.07422708971039	-1.07272223363145	0.0183220676448885	0.1207990415798
Merged-chr17-45767175-4	chr17	45767095	45767295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	32689.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	6.41191441709942	6.20562102473931	6.48131656852829	6.56422932150482	6.52852015325446	6.25159956663479	6.674365416291	6.40846459000895	0.0725039056654252	0.750073812006168	0.901576629816678
Merged-chr7-68756985-4	chr7	68756892	68757092	+	964.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-7754.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	5.32103483863564	5.54142172112302	5.37893040869425	4.73452536824995	5.5157104334214	5.27616971388571	5.2360973683218	4.86968013992342	-0.0256493491228535	0.942727929023163	0.97926361084735
Merged-chr1-75236940-4	chr1	75236840	75237040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159885, exon 1 of 9)	exon (NM_001159885, exon 1 of 9)	238.0	NM_001159885	56812.0	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	6.15788069650515	6.66067547504653	6.54886213333846	6.45377114918649	6.34146304486288	6.59050640689949	6.706576367261	6.51185396698399	0.0979899221976312	0.668885014187965	0.863339192066389
Merged-chr11-20847732-4	chr11	20847643	20847843	+	910.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16635.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	3.90010496340999	4.40572203935805	4.16784899971122	4.58999482095017	4.44159690430946	4.08215237269548	4.05072477277476	4.60952166247416	0.0371602393011511	0.934579441791574	0.976356212091203
Merged-chr17-56883871-4	chr17	56883771	56883971	+	987.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030141, intron 10 of 13)	intron (NM_030141, intron 10 of 13)	8238.0	NM_030141	78625.0	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	4.60357589594903	4.96710020958446	4.87575038473041	4.45195900335024	4.8020225894299	4.64820995954253	4.91956666548142	5.09562591052558	0.304507716509853	0.395402753962885	0.694271365738916
Merged-chr7-101649694-3	chr7	101649624	101649824	+	920.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14044.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	3.42903066089728	3.77526520979942	3.76047873701423	3.81977819390693	3.58123700653699	3.66515026698253	3.53623140036751	3.75825493005403	-0.240869663847057	0.61819316834896	0.835863676650469
Merged-chr11-83605715-4	chr11	83605610	83605810	+	889.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 2 of 8)	intron (NR_036453, intron 2 of 8)	-12623.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	4.7246159030562	4.38396982705728	4.50849312269485	4.41708312599157	4.20578536289798	4.10482365467619	4.32066347903699	4.61856460176356	-0.429445858563556	0.276941887855461	0.589011463102874
Merged-chr19-41321376-4	chr19	41321279	41321479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-57375.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	8.16448144313795	8.57535301474328	8.15974270921296	8.06603259811493	8.03472234853064	8.19569187120572	7.97970094534766	7.8909888247453	-0.289398715255455	0.11701255106032	0.378500655129107
Merged-chr15-98933964-4	chr15	98933870	98934070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011654, intron 1 of 3)	CpG	420.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	6.33506310308163	6.57801670336958	6.37330970692551	6.21396820042527	6.59035993430418	6.68745190220102	6.57270072484801	6.50712144486698	0.318948417633512	0.141042241527528	0.417797066448372
Merged-chr19-28940590-2	chr19	28940490	28940690	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198651, intron 8 of 12)	intron (NM_198651, intron 8 of 12)	-23330.0	NM_028922	74411.0	Mm.441887	NM_028922	ENSMUSG00000040105	Plpp6	4932443D16Rik|Ppapdc2	phospholipid phosphatase 6	protein-coding	2.98185268552318	3.17856128387177	3.50484970643416	3.1259594670199	3.14108078998858	3.22917029590693	3.33918650094568	3.45410891809498	0.318281825171739	0.572196508716856	0.811128321794733
Merged-chr4-133498612-4	chr4	133498508	133498708	+	819.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081156)	promoter-TSS (NM_001081156)	-58.0	NM_001081156	69539.0	Mm.151594	NM_001081156	ENSMUSG00000056596	Trnp1	2300002D11Rik|Trnp	TMF1-regulated nuclear protein 1	protein-coding	3.52607434915453	3.66527734182085	3.46133403656527	3.67036640887099	4.10709526623484	4.21383877004096	3.94026033246751	3.90883901025534	1.29726547752468	0.00483325796187766	0.0463577922618005
Merged-chr8-84701753-4	chr8	84701649	84701849	+	936.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008535, exon 1 of 4)	5' UTR (NM_008535, exon 1 of 4)	292.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	4.47548868072877	4.67382518027997	4.34392494389584	4.30557828962665	4.57622410729157	4.68894024580484	4.37008359791194	4.51451128680436	0.208573293962766	0.573845408157437	0.811973307930812
Merged-chr2-102976405-4	chr2	102976301	102976501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-74736.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	6.07270796470456	6.3106274056488	6.4390823106303	6.13117499045419	6.3455202896409	6.64698959966724	6.66049159463097	5.92836608443694	0.274643847161662	0.288465366106258	0.600458438194979
Merged-chr10-7473684-4	chr10	7473608	7473808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029975)	promoter-TSS (NM_029975)	-231.0	NM_029975	77777.0	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	6.14941272868669	6.38125349642615	6.41947856858532	6.64344503239384	6.54711906608507	6.46847737583258	6.27885795802734	6.37982106601061	-0.000953530746252242	0.996722367431094	0.998686656503862
Merged-chr4-119968242-7	chr4	119968104	119968304	+	915.9428710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	153526.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	3.9545796714094	4.03682572702961	4.09438671007884	3.68768568546702	3.81283050984894	4.12693382402652	3.83758907330876	4.04713334255713	0.0494159992290855	0.912308603165709	0.967207481621882
Merged-chr2-155930137-4	chr2	155930052	155930252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_018888, exon 1 of 10)	5' UTR (NM_018888, exon 1 of 10)	158.0	NM_001355443	56046.0	Mm.158827	NM_018888	ENSMUSG00000005882	Uqcc1	2310079L17Rik|2410003P15Rik|3110038N19Rik|Bfzb|Bfzp|Cbp3|Uqcc	ubiquinol-cytochrome c reductase complex assembly factor 1	protein-coding	6.01173462331611	5.65018816070373	5.88849955854116	5.98249786738431	5.51777087825723	5.32239524733298	5.51150557885899	5.86233047489975	-0.539284998400571	0.0503946125801248	0.232913019069126
Merged-chr7-114317569-4	chr7	114317468	114317668	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029437, intron 3 of 3)	intron (NR_029437, intron 3 of 3)	-41452.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	5.26433752758376	5.31974541590258	5.58047292460162	5.66796887960738	5.6680035632362	5.56360803314986	5.2067744695788	5.26162390213792	-0.0577317481179223	0.848395683062817	0.942722205609508
Merged-chr7-82802486-4	chr7	82802391	82802591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46847.0	NR_046004	77800.0	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	6.91578987845483	6.49566597524696	7.36233357511633	7.62497087501215	7.36843816423637	6.9350236338194	7.12896459360637	7.11414929878409	-0.0424734791402507	0.876115471408307	0.953401261896251
Merged-chr6-88901675-3	chr6	88901553	88901753	+	996.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011906)	promoter-TSS (NM_011906)	-598.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	4.01453333342678	4.01181431363062	4.01513314887935	3.89950426093351	4.00522259733	4.13803765516467	3.79796653290714	3.86424018786589	-0.0590571102817913	0.890322720629761	0.958994596587661
Merged-chr16-43448244-1	chr16	43448144	43448344	+	810.333313	f0_balb.idr	intron (NM_181058, intron 2 of 6)	ORR1E|LTR|ERVL-MaLR	-28048.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	3.55359675997206	3.78024157417464	3.76557269667356	3.78083689662324	3.46224183231724	3.72710601784125	3.64950294074429	3.66210598220899	-0.331346305605531	0.484800730624889	0.758880279356098
Merged-chr10-83648746-4	chr10	83648596	83648796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145220)	promoter-TSS (NM_145220)	-32.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	7.11617616345284	6.96462699866068	6.89998643733194	7.32672910236546	7.20568940950454	7.14521988115946	7.33495644403713	7.23530529806179	0.176627164182125	0.373664211843347	0.677151812995197
Merged-chr15-95790848-4	chr15	95790742	95790942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253813)	promoter-TSS (NM_001253813)	-1.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	7.62365107547249	8.15689677366731	7.75505277355873	7.97702564811484	8.24347900647329	8.10193486697795	8.2453598386103	7.89722806668409	0.297773415156958	0.116732720913851	0.378058049387613
Merged-chr8-83608112-4	chr8	83608019	83608219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018808)	promoter-TSS (NM_018808)	-56.0	NM_018808	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	8.81227952510108	8.85637760893932	8.62936334170531	8.61700154920398	8.75573149638595	8.97966384412608	8.84349997947298	8.85499971859813	0.159618508171525	0.290461432438747	0.602657094955914
Merged-chr13-67060350-4	chr13	67060256	67060456	+	796.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166218, intron 1 of 3)	Lx8|LINE|L1	814.0	NM_001166218	78251.0	Mm.297247	NM_001166218	ENSMUSG00000090641	Zfp712	4921504N20Rik|mszf31|mszf89	zinc finger protein 712	protein-coding	3.70022954824047	3.57347027864438	3.88235002810275	3.59523314419554	4.43298960066859	4.48682696970906	4.54943877542107	4.46550494235496	2.09126242137026	3.89249288900442e-07	1.47688566815802e-05
Merged-chr2-73459371-3	chr2	73459265	73459465	+	845.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-5476.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	4.49031778595707	3.65331737024413	4.41606742842344	4.25433494350926	4.13568971316408	4.08053238151395	4.5048006626912	4.00764043984197	-0.103284484142281	0.82642936080263	0.933439367057084
Merged-chr19-41974261-4	chr19	41974173	41974373	+	969.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028152, intron 1 of 30)	intron (NM_028152, intron 1 of 30)	6863.0	NM_028152	72199.0	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding	4.67088348554693	4.64756373935056	4.25064083378627	4.57637577681991	4.7020490938142	4.32694969283387	4.32769328419679	4.47555220854789	-0.15885448050784	0.678078444026856	0.867974866493993
Merged-chr8-70234487-4	chr8	70234300	70234500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133972)	promoter-TSS (NM_133972)	22.0	NM_133972	76813.0	Mm.383251	NM_133972	ENSMUSG00000002343	Armc6	2410153K17Rik|AW554412	armadillo repeat containing 6	protein-coding	6.48432619811437	6.73237444286997	6.55339831718672	6.5808728123562	6.90200490331257	6.71343855684348	6.53630193059393	6.77492273720639	0.218814274754279	0.296542268510581	0.608507761092495
Merged-chr18-70643771-4	chr18	70643696	70643896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75504.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	5.19981334761746	5.23514821361007	5.20069169723819	5.30680532050188	5.31452305807478	5.58299678894536	5.35590083994644	5.22932026841247	0.232762612782413	0.416577666706319	0.710608999891895
Merged-chr10-17724304-6	chr10	17724219	17724419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010828, exon 2 of 2)	exon (NM_010828, exon 2 of 2)	1091.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	5.58553349054512	5.70500736942694	5.75954174718501	5.09247644665707	5.75292302638168	5.78717310895356	5.70692984803556	5.18180675921767	0.146092963972978	0.646806158052379	0.851401409677112
Merged-chr2-167786079-4	chr2	167785996	167786196	+	987.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94919.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	5.21004517750907	5.39954488407807	4.81889376651804	4.98013991491004	4.38607128191527	4.44569804314888	4.79589506580968	5.12016998109512	-0.808606408183519	0.0350195526027915	0.185327638268706
Merged-chr11-93968416-4	chr11	93968334	93968534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008704)	promoter-TSS (NM_008704)	87.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	7.23024760574826	7.62241540817584	7.31931588411762	6.91881982275186	7.70225031062427	7.92328166849746	7.51371618914491	7.34561024531249	0.465000313800503	0.0395426993519833	0.200274574643416
Merged-chr2-145889431-4	chr2	145889299	145889499	+	948.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13842.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	4.37517892342776	4.35556358102652	4.27932377123745	4.42737589868565	4.81268140405831	4.50610311791635	4.93747707351988	4.69983701129769	0.847265365981997	0.0183113166172763	0.120739342797694
Merged-chr15-57912141-4	chr15	57912036	57912236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167679)	promoter-TSS (NM_001167679)	-63.0	NM_001081396	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	8.2502611401321	8.43836633327187	8.09441082686027	8.46693923788192	8.36698696773614	8.50947336809815	8.55599434477781	8.6209854541697	0.234550421654162	0.158526775273771	0.445453291903665
Merged-chr10-62449253-2	chr10	62449153	62449353	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027926)	promoter-TSS (NR_027926)	93.0	NR_027926	74706.0	Mm.402550	NR_027926	ENSMUSG00000097129	4930507D05Rik	-	RIKEN cDNA 4930507D05 gene	ncRNA	3.34889307658865	3.23411313680674	3.51334014204748	3.26371839443349	3.45506393733978	3.62979045320437	3.21645779157383	3.45899905596338	0.379201637888049	0.466504964071171	0.746420287776482
Merged-chr2-118263983-4	chr2	118263887	118264087	+	816.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7021.0	NM_027759	71313.0	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	4.27721891085688	4.3248103913483	4.23200697311319	4.00438563705769	4.61640930203527	4.26106051561981	4.34508682702861	4.40353056107822	0.533936195083287	0.173183760612937	0.467181342252264
Merged-chr18-39241160-4	chr18	39241054	39241254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 14 of 21)	intron (NM_001361073, intron 14 of 21)	246091.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	7.01222875405076	6.42255041315333	7.11919802159045	7.05293373840693	6.87899295712437	6.99175195894191	7.11659596872447	7.06831836661433	0.114096074391915	0.613474415965783	0.83329826063945
Merged-chr4-133673220-4	chr4	133673112	133673312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145956)	promoter-TSS (NM_001145956)	-46.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	6.43509559658727	6.86072208160488	6.27137052727837	6.09056626612399	6.83472106564395	6.83150507592783	5.82975333119007	6.09999177171554	0.0499336934496538	0.87579396162534	0.953343358207453
Merged-chr11-118173204-4	chr11	118173101	118173301	+	945.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 10 of 12)	intron (NM_001112700, intron 10 of 12)	39541.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	5.28755527144276	5.0663942063566	5.05488663212782	4.7741543350745	5.05398659407405	4.73091833660765	4.82297572428988	4.76479398386854	-0.363878786864487	0.28828780147077	0.600320077688646
Merged-chr2-34418559-2	chr2	34418459	34418659	+	914.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290626, intron 1 of 10)	L1MB7|LINE|L1	11708.0	NM_001290626	227743.0	Mm.270866	NM_177345	ENSMUSG00000038696	Mapkap1	AI591529|D230039K05Rik|Sin1	mitogen-activated protein kinase associated protein 1	protein-coding	3.06621803232204	3.02528619423651	3.19258326889832	2.98027068450083	2.94534071699133	3.18016948233294	3.29378277084186	3.76202168341688	0.978311909608192	0.101281493099819	0.349273541514549
Merged-chr7-67217314-3	chr7	67217215	67217415	+	789.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131044, intron 2 of 2)	intron (NR_131044, intron 2 of 2)	5143.0	NR_131044	76628.0	Mm.384589	NR_131043	ENSMUSG00000097527	1700112J16Rik	-	RIKEN cDNA 1700112J16 gene	ncRNA	3.44780960492246	3.84462806255376	3.67008702806292	3.46949465121993	3.57183727462644	3.43526257888486	3.65487210390484	3.76582428233392	-0.00291694624385467	0.995310298508307	0.998283592902656
Merged-chr7-30336588-4	chr7	30336497	30336697	+	921.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14222.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	4.47439794528231	4.93068046968854	4.32807470438522	4.72199817052118	4.80289178942342	4.56004627055431	4.70511350297359	5.27231544485331	0.4580050734164	0.239926409939869	0.550399004463438
Merged-chr6-39226725-4	chr6	39226654	39226854	+	948.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19981.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	4.89881021257609	4.73941960177237	5.35392582313851	5.22785160266616	4.4344337481458	4.4331976593528	4.43450038570879	4.67258776112485	-1.23682604409362	0.000768537238710632	0.0108949834921697
Merged-chr5-147848362-3	chr5	147848306	147848506	+	581.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12222.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	3.08690671968278	3.3061900046311	3.15279326033641	3.20124136880325	3.30006975694943	3.32750677310172	3.31895410104496	3.62656830434028	0.743857616517431	0.163474828810303	0.453167225138784
Merged-chr2-34406859-4	chr2	34406782	34406982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177345)	promoter-TSS (NM_177345)	31.0	NM_001290626	227743.0	Mm.270866	NM_177345	ENSMUSG00000038696	Mapkap1	AI591529|D230039K05Rik|Sin1	mitogen-activated protein kinase associated protein 1	protein-coding	7.64193915476785	7.73220869286601	7.47214317707666	7.38702672173023	7.66182207834653	7.55970188123133	7.78523709577172	7.62106336836715	0.134277703957069	0.453712223886241	0.737638651163466
Merged-chr7-45621680-4	chr7	45621530	45621730	+	728.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001018013)	promoter-TSS (NM_001018013)	-181.0	NM_001018013	73456.0	Mm.380445	NM_001018013	ENSMUSG00000064158	Izumo1	1700058F15Rik|Izumo	izumo sperm-egg fusion 1	protein-coding	3.25061188292778	3.28289108210223	3.19161157817161	3.08957747414905	3.41638814365982	3.30302304362085	3.11900631850942	3.41239347231758	0.45523079373129	0.395171637384614	0.69409301033236
Merged-chr16-70394522-4	chr16	70394433	70394633	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 2 of 15)	intron (NM_028803, intron 2 of 15)	80584.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	5.38606751111524	5.20075965111026	5.70517140904099	5.87395683626605	6.65020793309989	6.06993266085876	6.97038084217372	6.75634641453642	1.62965374520917	1.09847181534997e-07	4.67352811385508e-06
Merged-chr1-125474327-4	chr1	125474221	125474421	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-38594.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	5.2224556494039	4.95612226561728	5.31146106626292	5.17034112981339	5.20813101719522	5.23612084683499	5.33994810693626	4.79040219493128	-0.0122238663649549	0.969161007772668	0.988873837789174
Merged-chr10-59997809-2	chr10	59997709	59997909	+	705.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025514, intron 1 of 3)	intron (NM_025514, intron 1 of 3)	-4996.0	NM_026937	69090.0	Mm.155839	NM_026937	ENSMUSG00000044475	Ascc1	1810015P09Rik|AI550520|ASC1p50|CGI-18	activating signal cointegrator 1 complex subunit 1	protein-coding	3.63063140140244	3.53556903107186	3.3431752525022	3.23880427856836	3.74403713919697	3.94443650993832	3.45287578865003	3.52145165654885	0.783696929906574	0.125797790516893	0.393885312133207
Merged-chr7-43659293-3	chr7	43659160	43659360	+	812.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_031181, exon 2 of 7)	exon (NM_031181, exon 2 of 7)	901.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	3.57964213809997	3.06887255153182	3.3588218824659	2.87728855047554	3.37779288650832	3.64831977959398	3.75098908919363	3.57797239171811	1.21620180375643	0.0349310203078634	0.185051733737229
Merged-chr16-32177033-4	chr16	32176929	32177129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2771.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	6.7214720918637	7.18174668571281	6.53273724857692	6.02030330866544	7.08772774597253	7.22077415007506	6.73135729453893	6.13093489301792	0.254093769046268	0.433050929800154	0.722758873865112
Merged-chr13-95801623-2	chr13	95801524	95801724	+	740.0	f0_balb.idr|f1_balb.idr	intron (NM_027711, intron 2 of 35)	intron (NM_027711, intron 2 of 35)	90298.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.30015699373676	3.1257911463842	3.24818822388422	3.64040369313052	2.97641283020438	2.83541073619669	2.72336020135097	3.01239737802213	-1.9514658296786	0.00349506830357762	0.0360178756016145
Merged-chr4-151999675-4	chr4	151999587	151999787	+	987.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3508.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	5.04300055600471	4.684465920806	5.14360831973825	5.28768570212149	5.22144026422826	5.18384080816708	5.34939174786913	5.04043555424502	0.247098641707692	0.448911679623855	0.73411488406806
Merged-chr1-55488478-4	chr1	55488389	55488589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	82543.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	6.33064175596123	5.73673157303419	5.91462247064505	6.23779556231276	5.89171192579819	5.54175371320484	5.69144712003595	5.79262944728885	-0.542773541428327	0.0478430351337399	0.225643505041096
Merged-chr11-101115743-4	chr11	101115618	101115818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155071, intron 1 of 6)	intron (NR_155071, intron 1 of 6)	4123.0	NM_026501	67998.0	Mm.33881	NM_026501	ENSMUSG00000017802	Retreg3	1300010M03Rik|4933404C01Rik|AI551748|Fam134c	reticulophagy regulator family member 3	protein-coding	5.29107269697567	4.79066759326177	4.75407563799692	4.55488138644912	5.14013398348591	4.93313070332743	5.09045142757936	5.44233140021699	0.590759240557713	0.0953242519344291	0.337917984455545
Merged-chr2-84602431-3	chr2	84602341	84602541	+	951.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007615, exon 20 of 20)	3' UTR (NM_007615, exon 20 of 20)	47039.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	4.04225790695935	3.66068385058404	3.99822669269064	3.86578822149465	3.67941983812682	3.86788302833225	3.78670006188337	4.08339439300041	-0.106868022069614	0.815174747668887	0.928710624683246
Merged-chr2-170347468-4	chr2	170347394	170347594	+	877.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164369, exon 12 of 12)	3' UTR (NM_001164369, exon 12 of 12)	-8867.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	3.51795699127075	3.34269620889918	3.72330725425599	3.51673849660845	3.6123539911434	3.79354874451738	3.32902835758066	3.51651659725245	0.142791919480293	0.777986306931279	0.913487233105429
Merged-chr2-156992137-4	chr2	156992035	156992235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013865)	promoter-TSS (NM_013865)	-24.0	NM_180956	29812.0	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	7.71328620709622	7.72249668533773	7.35080966042073	7.37373032340486	7.64886090388089	7.5999781156531	7.43453381164062	7.69344996521944	0.0693744414047579	0.713190290289156	0.88527884500467
Merged-chr7-67444817-6	chr7	67444631	67444831	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71873.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	4.02160269281836	4.06435054637472	4.20309399872825	3.88343357279122	4.12404865444909	4.14550390933287	4.05227340628579	3.91899778036895	0.0769610756834082	0.854280148141606	0.945122797583896
Merged-chr15-5241896-3	chr15	5241784	5241984	+	958.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136079, intron 2 of 2)	intron (NM_001136079, intron 2 of 2)	2303.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	3.70028900670131	3.34836290720746	3.85951640097628	3.53741028498651	3.78016409682502	4.03208407009566	4.10833521539837	4.08442530028621	1.11777029676366	0.0177006350568398	0.117848050015041
Merged-chr11-98358365-4	chr11	98358279	98358479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021547)	promoter-TSS (NM_021547)	11.0	NM_021547	59045.0	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	6.3854042841154	6.10050300732314	6.29801957092341	6.12741843176899	6.34512884978478	6.45433974071749	6.22873649439714	6.17835198711642	0.127259416401637	0.576322256301907	0.813496063401474
Merged-chr15-85076506-4	chr15	85076401	85076601	+	827.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080470, intron 19 of 24)	RLTR42-int|LTR|ERVK	33759.0	NM_001356616	73225.0	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	3.95084324594818	3.96830535920701	3.89994689399719	3.94612993534128	4.05910135730259	4.12374982865486	3.9839835686328	4.2204585196278	0.415157372217452	0.313150799279138	0.625098455939475
Merged-chr16-78265193-4	chr16	78265086	78265286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9732.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	5.83551571102623	5.8450933458448	5.92960872122401	6.17250203078167	5.96650207728586	6.12640022276641	5.75804061613991	5.8080477676452	-0.074517045939129	0.771439722230463	0.910379161490028
Merged-chr3-38112765-4	chr3	38112662	38112862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95357.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	5.71060090309395	5.78572735258526	5.88320921902557	6.37723591740808	6.03241932287657	5.75166350433164	5.39143119306567	6.02992807528962	-0.244375229970597	0.424294831546149	0.71610190673456
Merged-chr4-139192721-4	chr4	139192625	139192825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009798)	promoter-TSS (NM_009798)	-174.0	NM_009798	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	8.67566702131426	8.89764925298198	8.76775520407295	8.66171398129916	8.80188534648958	8.89459389592117	9.25044602541837	8.83895453782766	0.255693690825696	0.126154850203216	0.394689292014185
Merged-chr8-75067507-4	chr8	75067448	75067648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011622, exon 13 of 15)	exon (NM_011622, exon 13 of 15)	-26070.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	6.47620519620641	6.67601165470032	7.14699401038097	6.57486077356783	6.66420257609441	6.58246797668006	6.68404805978004	6.71350119874459	-0.106320308452275	0.64569649736621	0.850934142345746
Merged-chr1-165735016-3	chr1	165734920	165735120	+	880.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26926.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	3.44460195694376	3.36370907823994	3.1495240930905	3.35360605965573	3.49327452251499	3.38762638171669	3.32243772163424	3.44314629584475	0.287372844716514	0.577004057689743	0.813891082840518
Merged-chr11-120437457-6	chr11	120437274	120437474	+	999.595215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199469, intron 1 of 15)	CpG	326.0	NM_001195023	217365.0	Mm.309520	NM_199469	ENSMUSG00000039703	Nploc4	AK129375|Npl4|mKIAA1499	NPL4 homolog, ubiquitin recognition factor	protein-coding	4.59502088900603	5.15974848924388	5.13451871152615	4.71556886889446	4.98326655948311	5.24382205596731	4.97767083032474	5.48439439237263	0.512417359894612	0.142204263202951	0.41964996892715
Merged-chr7-130839568-4	chr7	130839463	130839663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26161.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	5.62959474877912	6.00867002489528	5.26305236535483	5.10777495346177	5.23388127462668	5.62085848788666	5.36086622288912	5.29173414018488	-0.285849058747501	0.398379405679224	0.696635540782353
Merged-chr15-6570629-4	chr15	6570538	6570738	+	834.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9209.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	4.22975586118858	4.32474516491939	4.13191363973021	3.73018444661282	4.91451891103951	4.31064456215261	4.25778358357446	4.56006895503335	1.03947580510213	0.0170759224372126	0.1149141612138
Merged-chr1-84924287-4	chr1	84924195	84924395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027921, intron 2 of 4)	intron (NM_027921, intron 2 of 4)	10788.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	6.54018127268845	6.59063034630057	6.604410222666	6.88687773529533	6.16433008469898	6.44956679266751	6.61576861349626	6.32604860181164	-0.416623238837364	0.0698915672808398	0.282949145005284
Merged-chr14-26579520-4	chr14	26579435	26579635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134465)	promoter-TSS (NM_001134465)	-15.0	NM_001134465	211922.0	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	6.71793296125479	6.87635899638945	6.64131458731177	6.67597648720742	7.16976688750218	6.95465565684724	6.87933193452208	6.77325213208043	0.325568547321711	0.112844160559212	0.371420623567672
Merged-chr16-16856913-4	chr16	16856808	16857008	+	901.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A|LTR|ERVK	7077.0	NM_001190325	16136.0	Mm.184441	NM_001190325	ENSMUSG00000075370	Igll1	BB139905|Igl-5|Igll|Lambda5	immunoglobulin lambda-like polypeptide 1	protein-coding	4.56947905979852	4.37893155089822	4.6126512134045	4.74878419644201	4.89003827420891	5.07952765648362	4.81820513115017	4.7665698721138	0.612631292702171	0.0778801976232788	0.301749201819572
Merged-chr3-68557139-4	chr3	68557053	68557253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113421, intron 2 of 7)	intron (NM_001113421, intron 2 of 7)	-15215.0	NM_013928	30953.0	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	5.53950627787009	5.45544728542682	5.94319880381332	6.04009109855865	5.3216319793694	5.43986067704671	5.69375978254645	5.78932593694118	-0.36205221928755	0.230812078633297	0.540320099488242
Merged-chr7-132475258-3	chr7	132475195	132475395	+	772.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	101103.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	3.1691491843776	3.36439269283821	3.2310797185916	3.17765260615833	3.3712647174458	3.27968260541095	3.3869338553748	3.49954000671475	0.552116163397413	0.287723086057909	0.599579633530928
Merged-chr2-145863300-4	chr2	145863170	145863370	+	859.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 9 of 12)	intron (NM_028724, intron 9 of 12)	-39971.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	4.29384000867678	4.51187199609456	5.10006150020277	5.33571235844757	4.23569699529908	4.20451931189461	4.73663801122558	4.24025083981905	-1.11914148488567	0.0138370892874794	0.0991911128865114
Merged-chr5-115011765-6	chr5	115011663	115011863	+	897.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029012, intron 1 of 10)	CpG	239.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	4.69039632054553	4.34791574822924	4.65573038131037	4.33312282384253	4.46481821118072	4.3607089147887	4.39923257904352	4.50007356455905	-0.156762189980435	0.677070286122122	0.867413330276592
Merged-chr8-79028739-3	chr8	79028661	79028861	+	741.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 1 of 14)	intron (NM_001294279, intron 1 of 14)	324.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	3.12875097962781	3.26212152477603	3.01677917947875	3.15547738841849	2.71175970953393	3.0021194886349	2.75016520212133	2.60629687622604	-1.75180307767941	0.00896080602841208	0.0729438714886028
Merged-chr5-32940880-4	chr5	32940785	32940985	+	963.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025426, intron 28 of 42)	intron (NM_001025426, intron 28 of 42)	77164.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	4.71068112576345	4.60664395874174	4.26256657266942	4.96183931613014	4.96253400285378	4.59208097633202	4.65116642542496	4.81719445287902	0.192839088649549	0.614507195114307	0.833937228618518
Merged-chr11-115367742-3	chr11	115367646	115367846	+	808.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346774)	promoter-TSS (NM_001346774)	10.0	NM_001346774	217310.0	Mm.205707	NM_175454	ENSMUSG00000034586	Hid1	C630004H02Rik	HID1 domain containing	protein-coding	3.93440974256457	4.09463895481984	3.75609032902302	3.66981955121258	4.71364215921166	4.57146696331808	4.30010508549414	4.2752737803374	1.56615482138426	0.000194315211281234	0.00354918204356862
Merged-chr5-32714057-4	chr5	32714009	32714209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	32233.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	7.45276905790511	7.6321792774993	7.36633926599093	6.99943526301677	7.46816232704811	7.73903134357121	7.08612327775974	7.37126828428145	0.082265114801649	0.716017890475629	0.886371813543908
Merged-chr2-18087822-4	chr2	18087725	18087925	+	938.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010804, intron 3 of 22)	RMER16_Mm|LTR|ERVK	23240.0	NM_001252561	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	3.90034604308442	4.50964164078034	4.40163980500727	3.5844065425098	4.60074045967783	4.69188106090141	4.20448012855028	4.47933566306892	0.844654322020785	0.0741778807747188	0.293424904605638
Merged-chr4-7455381-3	chr4	7455258	7455458	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105330.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	3.36747312651568	3.24916575285234	3.47291754673495	3.43324243959995	3.39087929442698	3.36410493173669	3.24190185499462	3.19058898925235	-0.296944278549066	0.572394696249293	0.811251013052168
Merged-chr17-43460684-1	chr17	43460584	43460784	+	572.0	f0_c57.idr	Intergenic	Intergenic	42089.0	NM_008585	17287.0	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding	2.8841106565538	2.96625664668932	2.9500299687897	2.88844211376593	3.22230428708427	3.05839614083392	3.22211925785883	3.01103867787277	0.886472392852095	0.118264315565934	0.380397458972873
Merged-chr19-29369045-1	chr19	29368945	29369145	+	774.833313	f0_balb.idr	intron (NM_021893, intron 1 of 6)	intron (NM_021893, intron 1 of 6)	1607.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	4.6172389668083	4.92657928453536	4.48956016345822	4.1793332485919	4.64717947720362	4.90728590488782	4.78376853534319	4.80383863897494	0.460682136070122	0.227878136515906	0.536610906774264
Merged-chr11-103325366-2	chr11	103325266	103325466	+	946.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19336.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	3.2905357161708	3.60239454005877	3.03372412874429	3.06285889557266	3.42848892659985	3.3439202922781	3.44088875509952	3.28923742316709	0.40640465949937	0.469212581918753	0.748190190268508
Merged-chr18-10533149-4	chr18	10533081	10533281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083628, intron 19 of 32)	intron (NM_001083628, intron 19 of 32)	77171.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	6.76262326409133	6.9520336516218	7.10737510635065	7.28374093830417	7.27315187325285	6.78066930363856	7.17117123254801	6.95545374657249	0.0203475704154108	0.926768674767116	0.973117623893315
Merged-chr2-73526885-4	chr2	73526778	73526978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	2609.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	6.35129794366901	6.22074812476698	6.24364338156496	6.51667285522323	6.1488677190184	6.17022231387849	6.05117673989274	6.03409939094262	-0.376790282044072	0.101529066065482	0.349626372612238
Merged-chr12-79545233-3	chr12	79545137	79545337	+	730.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	247886.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	3.38945953405584	3.66139274302792	3.33035804857853	3.51855642156703	3.24435468665328	3.77066372667081	3.31851365559458	3.32870219145383	-0.196116694453726	0.715144233758163	0.886010584897636
Merged-chr6-83107775-4	chr6	83107675	83107875	+	835.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081266, exon 8 of 9)	exon (NM_001081266, exon 8 of 9)	-1333.0	NM_026744	68499.0	Mm.333183	NM_026744	ENSMUSG00000030037	Mrpl53	1110007K17Rik	mitochondrial ribosomal protein L53	protein-coding	3.916777236176	3.98521415353477	3.86348717313867	4.02098344581713	3.92540254251412	4.36876743118438	4.09466536219734	4.19778732926905	0.507970796702405	0.23097666376272	0.540456540104097
Merged-chr7-68144483-3	chr7	68144372	68144572	+	758.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	119761.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	3.64076744374916	3.58242294621816	3.37140945473747	3.81422045144484	3.41294725258539	3.21659149700434	3.41747113808036	3.53810619482836	-0.738094793745154	0.160647918364642	0.448876227004313
Merged-chr7-90071649-4	chr7	90071551	90071751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42492.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	6.25893118788637	6.38532406183975	6.50077963933575	6.40273542172053	6.00330776100006	6.49096738953905	6.2279606245035	5.83226375319301	-0.357700494795522	0.14653482722229	0.426967777286073
Merged-chr8-26981860-4	chr8	26981758	26981958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001101502)	TTS (NM_001101502)	4522.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	6.84156663359662	6.83295617975056	6.62697804441457	6.70855070064248	6.72383241614705	6.50553185329666	6.79479884133069	6.47252838379189	-0.166216664251286	0.426379617937803	0.71785029625798
Merged-chr17-86237524-3	chr17	86237410	86237610	+	828.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	49668.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	3.23308899560787	3.01368687840152	3.61775229684219	3.55985669255418	3.08170332566787	2.87468275145431	2.90925638571243	2.98565725518301	-1.66735477100589	0.00958290316681969	0.0765374174720668
Merged-chr13-42248863-4	chr13	42248752	42248952	+	922.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52624.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	3.91361909906899	3.91480949512372	3.70902510381434	3.54109004343149	4.24005788728654	3.64886360026816	3.51879363800535	4.04642336024104	0.3793034323865	0.453598805199379	0.737598830499322
Merged-chr1-175880668-4	chr1	175880562	175880762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012012)	promoter-TSS (NM_012012)	-116.0	NM_012012	26909.0	Mm.283046	NM_012012	ENSMUSG00000039748	Exo1	5730442G03Rik|Msa	exonuclease 1	protein-coding	7.0675401015734	7.0852265242463	7.76423664220901	7.47592005947524	6.45607085628047	7.04860652608595	7.09261383209	7.22434950247017	-0.548820484092514	0.0320098245872161	0.1748049770959
Merged-chr18-80469276-2	chr18	80469165	80469365	+	1000.0	f0_balb.idr|f0_c57.idr	exon (NM_026295, exon 1 of 13)	exon (NM_026295, exon 1 of 13)	402.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	5.48867088703334	5.25707171343163	5.43651851290934	4.87707072129137	5.42050195526113	5.23801991287775	5.29653977673264	5.37728902633564	0.135656373752335	0.666975764546388	0.862204789067879
Merged-chr15-75709404-4	chr15	75709286	75709486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163465, intron 4 of 14)	MIR3|SINE|MIR	5098.0	NM_008164	14787.0	Mm.57052	NM_008164	ENSMUSG00000022580	Rhpn1	BB023497|Grbp|Rhophilin|mKIAA1929	rhophilin, Rho GTPase binding protein 1	protein-coding	5.56953937794847	6.13750222517238	5.45041427210825	5.63024758468334	6.13647642131943	5.85659041455674	5.97283881747015	5.5949260027978	0.300922724558884	0.304909182836358	0.617425354648188
Merged-chr17-45574314-4	chr17	45574209	45574409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1048.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	6.49857151952414	6.22121162469801	6.36624203709987	6.75288039929249	6.40506094268534	6.00562384726979	6.12445011039357	6.06553089454261	-0.475776850645138	0.057846381408853	0.252496206152953
Merged-chr7-68749391-4	chr7	68749311	68749511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025549)	promoter-TSS (NM_025549)	-173.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	9.5256837370741	9.43384985143735	9.70844423350925	9.51461329783549	9.60762305036041	9.77835384964053	9.74720794417833	9.34998631525878	0.101223654385775	0.51916600114314	0.779893987197256
Merged-chr19-6974662-8	chr19	6974516	6974716	+	991.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008889)	promoter-TSS (NM_008889)	-432.0	NM_008889	18938.0	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	4.06183579505659	4.33925782117544	4.25770730219286	4.02399231213881	4.22925720890845	4.63529363917972	4.19313964825574	4.46344117973039	0.526823231262544	0.190528833880354	0.489802508912514
Merged-chr4-13152376-3	chr4	13152279	13152479	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	245542.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	5.57705538109242	4.92780867191548	5.76881407802661	6.27110171194559	4.10375476916575	4.47412386001828	4.47622493138712	4.2710658850478	-2.85239180428675	3.07684342550404e-11	2.55848876383122e-09
Merged-chr18-38923233-3	chr18	38923134	38923334	+	915.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 3 of 4)	intron (NM_001033789, intron 3 of 4)	-4535.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	4.12653631747258	3.85786441458588	5.11843336562999	5.09637481703719	3.32767095441469	3.64146152794672	4.05802240610233	3.90981440625613	-2.25234480898608	0.00815781975401616	0.0680563352153357
Merged-chr5-151086566-4	chr5	151086455	151086655	+	770.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153382, intron 3 of 13)	intron (NR_153382, intron 3 of 13)	103638.0	NM_001163493	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	3.50250998133091	3.48876964376	3.95949018455207	3.64924631302534	3.6221868200678	3.99291974442412	3.60506324003235	3.67164628541547	0.202760943543347	0.680087378616079	0.868613329816696
Merged-chr13-64378862-3	chr13	64378759	64378959	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8339.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	4.91024496555186	5.11096225260784	5.21847025031084	5.50614684028249	3.83452765863348	3.77020570850085	3.77223374900901	3.63508846342924	-3.84643585457028	1.88658100017371e-13	2.32326901403744e-11
Merged-chr8-35643941-4	chr8	35643841	35644041	+	978.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-54921.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	5.73148623964611	5.61170184261493	6.26626575662882	6.53888659102531	5.33507629886637	4.99581199180194	5.51904894448082	5.39267484734096	-1.2979476435183	0.000102083313398928	0.00206543154190515
Merged-chr13-74317337-4	chr13	74317240	74317440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011051)	promoter-TSS (NM_011051)	-14.0	NM_001359996	18570.0	Mm.24254	NM_011051	ENSMUSG00000021576	Pdcd6	AV299538|Alg2|MA-3|PS2|alg-2	programmed cell death 6	protein-coding	8.00425758680942	7.83522133597536	8.05248454661858	8.38605353265548	8.07496676012282	8.0154218511524	8.26835038666743	7.9933855392421	-0.00318086894988405	0.98645515074652	0.995010290574724
Merged-chr17-70707154-4	chr17	70707057	70707257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360665, intron 9 of 14)	intron (NM_001360665, intron 9 of 14)	139620.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	5.74730575969307	5.59822052231492	5.25650863924807	5.51275844468941	5.27285344246325	5.61726882162884	5.35672177051272	5.60072830079796	-0.135467364815626	0.638005649829653	0.847040716325261
Merged-chr9-44571133-4	chr9	44571034	44571234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33758.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	6.24816803828265	6.75512137212876	5.9553253986503	5.58154271038061	6.86302426733116	6.87896016750624	6.85130743643775	6.54866866278601	0.861785501287109	0.003737096272736	0.0379611043663281
Merged-chr14-34769864-2	chr14	34769764	34769964	+	691.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50272.0	NM_008166	14803.0	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	3.23004572427949	3.20779378978011	3.23048357059831	3.04411948575574	3.17574984973932	3.22450737675378	2.90908972582276	3.22871280020973	-0.12452566250749	0.825628156953478	0.933134099875256
Merged-chr9-65202117-3	chr9	65202001	65202201	+	928.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12589.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	4.08809538083701	3.9913257969886	3.75453034180382	3.87026115399995	3.77304751293848	3.97972565769551	3.89241111254729	3.69716352110958	-0.26505399145805	0.552899117207339	0.799910694601541
Merged-chr9-21718973-4	chr9	21718867	21719067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-4609.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	6.41887575443723	7.10740828842511	6.58051130831963	6.25671195487702	6.99119172975858	7.17947597976075	6.90688535392238	6.96207468648981	0.542996206702385	0.0299304713146459	0.167000158164551
Merged-chr1-64876441-4	chr1	64876331	64876531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 5 of 7)	intron (NM_001039493, intron 5 of 7)	80393.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	6.89658202061818	6.71967980250162	6.70969679201022	7.22692827196126	7.1550110601886	6.9915563774153	7.1486990045497	6.80961758220222	0.15879547359896	0.476948625096299	0.753241702412926
Merged-chr19-57611321-4	chr19	57611208	57611408	+	956.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_181415, exon 1 of 29)	5' UTR (NM_181415, exon 1 of 29)	274.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	4.607353691843	4.37361216852824	4.88876590480415	4.54963653055797	4.54339382453384	4.74079324237269	4.42062047387866	4.52407464671719	-0.110985361871621	0.763078094671048	0.907078979109007
Merged-chr2-118900082-3	chr2	118899992	118900192	+	849.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1523.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	3.73286230644972	3.54101250559233	3.91740307518923	3.30375672776381	3.71779969341891	3.51214469243606	3.44621105058851	3.82636828606071	0.0150285009489069	0.977036866861756	0.991832478270637
Merged-chr13-62684832-4	chr13	62684741	62684941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60659.0	NM_173381	211378.0	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding	6.25328739164176	6.49821744226851	6.95383456165862	5.44345151657825	6.37540675207148	6.56368252644429	6.6109050332096	6.62559746087678	0.228144350913292	0.486848622727341	0.7603696580653
Merged-chr11-108222820-4	chr11	108222739	108222939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	121049.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	7.28247945174255	7.42401703320532	7.78288123724537	7.86037058439531	7.54441486275088	7.15362652011906	7.42043829439473	7.33223898006201	-0.321653314735218	0.127500248261265	0.397369375564266
Merged-chr17-35824554-4	chr17	35824385	35824585	+	911.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008027, intron 4 of 12)	intron (NM_008027, intron 4 of 12)	1128.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	3.77535283794029	4.20270986029625	4.11237274005406	3.01096227069416	3.97723191208934	4.10513424036783	3.58708721907574	3.92839255211988	0.125584407254744	0.832258502000166	0.935753947395642
Merged-chr6-125345767-4	chr6	125345663	125345863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011324)	TTS (NM_011324)	-3960.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	6.25386626623544	5.94019249144315	5.60300006812014	6.03946818607343	6.39745346448354	6.1468419099382	6.39184252918263	5.98859212021622	0.408959830013264	0.11681804283521	0.378177626368646
Merged-chr9-120002211-4	chr9	120002108	120002308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17466.0	NM_153287	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	7.84363982352057	8.29931607614766	7.71149323512521	7.28627536725157	8.0134504178251	8.2343776415321	7.73824630039015	7.41898135366893	0.0700393423546961	0.787124873338496	0.917373657088415
Merged-chr9-44066984-4	chr9	44066873	44067073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198092)	promoter-TSS (NM_198092)	-48.0	NM_198092	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	7.76194840006756	8.09495800926265	7.32259504254569	7.34347948469505	7.90701164956574	7.83582259960717	7.42113955365645	7.66152447557171	0.0694127570669073	0.765840068304852	0.908405583340288
Merged-chr2-128746714-4	chr2	128746613	128746813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	47798.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	5.78172686993144	5.3423209869715	5.48859254668124	6.17607372708613	5.79371786929858	5.44073397883657	5.84472175704743	6.03636942402062	0.0639120201399559	0.84136573387089	0.939692952741932
Merged-chr12-85543049-4	chr12	85542962	85543162	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-56043.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	3.99808508504027	4.18953780567671	3.82405337604487	4.50589066756211	4.68362269021453	3.94670057895993	4.54295268841024	4.37302887348369	0.591600491584922	0.210122617012457	0.514583471300609
Merged-chr2-20899504-4	chr2	20899389	20899589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128084, intron 3 of 24)	intron (NM_001128084, intron 3 of 24)	68232.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	6.44634558816608	6.63714553462846	6.200097668164	6.60848258678056	6.71746714534494	6.57092016178145	6.30687573535427	6.44287810881909	0.0447203790277893	0.846662873000773	0.941967608044389
Merged-chr15-55252598-4	chr15	55252500	55252700	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145470, exon 9 of 9)	3' UTR (NM_145470, exon 9 of 9)	-55150.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	5.28827221198971	4.95929609576999	5.25842489477562	5.08270740293277	5.55018671199162	5.49270611467636	5.32183648444173	5.3734346210798	0.540413529616268	0.0613500267293747	0.262060366872149
Merged-chr10-63460539-4	chr10	63460441	63460641	+	928.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164376, intron 1 of 17)	intron (NM_001164376, intron 1 of 17)	3030.0	NM_001164376	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	4.45736338164332	4.7945577302179	4.45805283107262	4.22728783324636	4.76430095861655	4.44607133829172	4.8839589007563	4.87298812200822	0.576648175844767	0.125677977582109	0.393683362752401
Merged-chr10-81303931-3	chr10	81303853	81304053	+	947.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	10990.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	4.55840132343103	4.25787934634175	4.06526209419364	4.29678399462089	4.29377366936357	4.08367579989705	3.99773037028154	4.01171024329406	-0.486464150544222	0.245801501675793	0.556963839422572
Merged-chr16-93888540-6	chr16	93888418	93888618	+	924.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028083, intron 5 of 13)	intron (NM_028083, intron 5 of 13)	4617.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	3.65931000664659	3.1874469115923	3.13122688011	3.40236797221943	4.00273289844126	4.07895642261815	3.79779227925066	4.07534059058661	1.91324174347711	0.000262801959275194	0.00454580331938008
Merged-chr7-44304967-3	chr7	44304880	44305080	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009131, exon 4 of 4)	exon (NM_009131, exon 4 of 4)	1979.0	NM_009131	20256.0	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding	7.65034169309279	7.7449766417088	7.86879577143537	7.58461256066264	7.87465865108947	8.17923142107418	8.13040793800937	8.067301920522	0.457500001360902	0.00769878039344002	0.0653774645544212
Merged-chr19-55586217-4	chr19	55586126	55586326	+	978.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	Tigger19a|DNA|TcMar-Tigger	115978.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	5.30692678455012	5.27114502690507	5.73979793860475	5.56841909727466	5.19134728492903	5.14171698567255	5.28152839125465	5.14286783024557	-0.537240610718905	0.070571162821486	0.284741076507525
Merged-chr2-73487082-4	chr2	73486977	73487177	+	894.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-1324.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	4.96330379269105	4.55038402599755	4.93229701359415	5.16580908712031	4.45672103847362	4.34594423152636	4.66139911001901	4.64041307547804	-0.855409951888126	0.0209486797313665	0.132131685830655
Merged-chr14-66235773-4	chr14	66235701	66235901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-21977.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	6.74422187127191	6.18291816598066	6.47395422228655	6.55778806610087	6.1781196151981	6.52682933954718	6.59810188804025	6.48604302121406	-0.0830093593308193	0.727886463238481	0.891727002407047
Merged-chr5-103692279-4	chr5	103692204	103692404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-36572.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	7.17671711724719	7.09645968113833	7.09399621043593	7.15611261170574	7.36955536919984	7.47665402876585	7.75170318844611	7.53322889074062	0.542775785791534	0.00310724661564627	0.0328487608577285
Merged-chr8-124219311-4	chr8	124219221	124219421	+	990.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	-12073.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	5.47141947212105	5.40828440409081	5.9519423152316	5.5006513599573	4.81217035834747	5.15129674195028	5.69432728124161	5.49599810954741	-0.475644967641398	0.164690675170059	0.454900556624874
Merged-chr10-13946706-4	chr10	13946606	13946806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19369.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	7.22592788498184	7.70528899169487	7.45673001630437	7.69819438772763	7.358501659084	7.61468770052376	7.54625049685331	7.17549755317196	-0.150719452682805	0.459286828829359	0.741899988799976
Merged-chr4-46196253-4	chr4	46196131	46196331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011728)	promoter-TSS (NM_011728)	80.0	NM_011728	22590.0	Mm.247036	NM_011728	ENSMUSG00000028329	Xpa	AI573865|Xpac	xeroderma pigmentosum, complementation group A	protein-coding	6.63306713645769	6.40646189840941	7.06360256620713	6.8147881774038	6.61464228559471	6.53564544594744	6.56908645035314	6.66016062510149	-0.222788000787303	0.326387942693633	0.637923349237677
Merged-chr14-55815075-2	chr14	55814975	55815175	+	915.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-9720.0	NM_001168346	73181.0	Mm.27908	NM_023699	ENSMUSG00000023411	Nfatc4	3110041H08Rik|AW107667|AW546455|Nfat3	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4	protein-coding	3.32205948502967	2.95861465956483	3.00450052630307	2.88956148786149	3.07343660806302	2.91423250457964	2.73178707680937	3.22475912589771	-0.205797426135151	0.745316120301281	0.899471958747455
Merged-chr5-100608086-4	chr5	100607983	100608183	+	962.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35878.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	4.66585627885857	4.4661338897694	4.6666092898173	4.84388640733844	4.82794630886071	4.34843119465787	4.52741196609652	4.58579526868862	-0.176848516099216	0.633858407604704	0.844900836080454
Merged-chr15-25622396-4	chr15	25622283	25622483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019472)	promoter-TSS (NM_019472)	-167.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	9.07751767829481	9.4497277412145	9.06511971763886	9.15606208411709	9.3621655766674	9.3620632521604	9.36234479086286	9.05953825268826	0.118109343058375	0.467736299457901	0.747125948872246
Merged-chr10-51526332-4	chr10	51526237	51526437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS2|LTR|ERV1	35439.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	7.79570347618305	8.26088013385522	7.80478343635318	7.63793900492298	7.96413818191306	7.87734367490051	7.84918826087993	7.79172627997991	-0.0252099187906624	0.897050770954795	0.961512744526802
Merged-chr13-67421371-4	chr13	67421283	67421483	+	911.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177811)	promoter-TSS (NM_177811)	35.0	NM_177811	328274.0	Mm.222470	NM_177811	ENSMUSG00000055560	Zfp459	9930025G17Rik|Rslcan-14	zinc finger protein 459	protein-coding	5.18928214290821	5.44640336425145	5.68259893511158	5.39267079404413	4.61607582325492	4.56857733346663	4.61062127336959	4.67422183838689	-1.62478250001381	1.1014805662854e-06	3.82636823951335e-05
Merged-chr15-76522258-2	chr15	76522158	76522358	+	603.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130893)	promoter-TSS (NM_130893)	-129.0	NM_130893	170729.0	Mm.218747	NM_130893	ENSMUSG00000048385	Scrt1	-	scratch family zinc finger 1	protein-coding	3.00768488103798	3.10564262350079	3.06811897499481	2.74268303951873	3.21984657760696	2.91686377062838	3.2191628806176	2.87777080406988	0.380185111677875	0.534240647060477	0.789066961676578
Merged-chr17-84878049-4	chr17	84877963	84878163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78678.0	NM_001159497	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	5.08038251911759	5.11119528714541	4.85376113141287	4.82348659325924	5.58920667273891	5.68931750418363	5.24824641927198	5.17801042517336	0.890714031369238	0.00425072768191951	0.0420517784115843
Merged-chr6-47594330-4	chr6	47594203	47594403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007971, intron 1 of 19)	CpG	727.0	NM_001146689	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	6.17392492900159	6.69217645310633	6.21475288802198	6.30305634773936	6.20298644645581	6.37107524767857	6.22122021735065	5.77122431258208	-0.310241848185699	0.230759923162771	0.540251309765578
Merged-chr4-89271437-2	chr4	89271337	89271537	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10755.0	NM_001040654	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	3.47309099866876	3.29900332598686	3.24340222128388	3.58286512891846	3.43906854412498	3.41677288230622	3.51061040646391	3.30326686633711	0.00714300220278727	0.989096618780491	0.995648451168357
Merged-chr16-4624924-4	chr16	4624762	4624962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025571)	promoter-TSS (NM_025571)	84.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	6.80517082037338	6.84658791745581	6.8199739081596	5.98350320408618	6.81513924242779	6.89790278602544	6.64267356165129	6.78777689684847	0.204350583461703	0.43828436285432	0.726330030804391
Merged-chr13-56152036-3	chr13	56151936	56152136	+	858.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16486.0	NM_001159513	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	3.36364368484673	3.47787625483508	3.52580921071466	3.41166645712091	3.52019798097834	3.14888337506428	3.40712596784885	3.41845151592773	-0.194949835097927	0.708192405345299	0.882710273980338
Merged-chr3-108284073-4	chr3	108283922	108284122	+	783.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271599)	promoter-TSS (NM_001271599)	-42.0	NM_001271599	20661.0	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	4.10237700277705	3.7679005446796	4.05996703878906	4.02540594872384	3.6953547285362	3.70714176857672	4.12538789748514	3.70735353824918	-0.492789671389106	0.285827858442211	0.597484395056184
Merged-chr5-64811744-4	chr5	64811681	64811881	+	782.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	8258.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	3.91026052343213	4.26000420656978	4.01295357811359	3.70004777172158	3.97219965780382	3.97921194543701	4.04341498593302	4.42519295606407	0.366637697212477	0.41801588265344	0.711628236434313
Merged-chr4-62850585-3	chr4	62850450	62850650	+	995.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115024.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	3.85643923401403	4.24862264396693	4.48245340849587	4.30411257409967	3.91412041471514	3.79386543095938	3.95086678588424	4.44371898504711	-0.495902809025266	0.28509832919298	0.596866661479153
Merged-chr2-103673829-3	chr2	103673738	103673938	+	916.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	87432.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	3.89628995899638	3.55692484474008	3.89686223494126	3.94159957004338	3.78857614258756	3.74428132415388	3.88031048449622	4.19683401638423	0.215607272091463	0.643065317040813	0.849459897971419
Merged-chr5-138694892-3	chr5	138694787	138694987	+	942.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60194.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	4.57266797452514	5.11159689174411	4.85114773837902	4.27291302965918	4.19691761629502	4.29572957530205	4.20012014949572	4.10990364676188	-1.23411155496666	0.00400062153392912	0.0400732113936872
Merged-chr5-123930706-4	chr5	123930672	123930872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134767)	promoter-TSS (NM_001134767)	83.0	NM_001134767	208908.0	Mm.243679	NM_001134767	ENSMUSG00000061882	Ccdc62	AI661708|G1-485-3|Gm150|repro29	coiled-coil domain containing 62	protein-coding	6.7669270601907	6.94758449829848	6.58471716652178	6.56362607559856	6.66931220610085	6.97175591434014	6.71944843448836	6.83254013854798	0.111612168560533	0.601425462021237	0.827096544712114
Merged-chr4-59083629-4	chr4	59083512	59083712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48456.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	5.41278281195409	5.91158421407789	5.34908939606589	5.79591159294191	5.96304237504938	5.96671636918522	5.50630996125086	5.7411229531512	0.25877454602991	0.375796679064717	0.678628775602484
Merged-chr1-53816118-1	chr1	53816018	53816218	+	550.0	f0_balb.idr	intron (NM_001001883, intron 28 of 28)	intron (NM_001001883, intron 28 of 28)	-30903.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	2.90000624066019	2.69270034154908	2.84360770500919	2.8356815963002	2.73876469937161	2.69065680631543	2.77415754961881	2.43722549363596	-0.735174461556005	0.276663658886626	0.588648370176694
Merged-chr4-45514223-4	chr4	45514215	45514415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	16513.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	5.73520602182089	5.96480948014156	5.7362118038385	5.76427159004999	5.47809284274079	5.70150450477501	5.43939872180484	5.65716360726937	-0.395682798280518	0.130889088722479	0.402738704282944
Merged-chr7-6172251-4	chr7	6172178	6172378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146024)	promoter-TSS (NM_001146024)	-235.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	8.91386805334176	8.97296225586957	9.01936227803947	8.95530699016289	8.85619715408952	8.97942151199852	8.88656096549607	8.88700767927853	-0.0796443380277505	0.559877978255901	0.804106019788834
Merged-chr4-138326297-4	chr4	138326208	138326408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026880)	promoter-TSS (NM_026880)	-12.0	NM_026880	68943.0	Mm.18539	NM_026880	ENSMUSG00000028756	Pink1	1190006F07Rik|AU042772|AW557854|BRPK|mFLJ00387	PTEN induced putative kinase 1	protein-coding	6.04151469205395	5.61849171601464	4.90942370569592	5.27532410033934	6.0841115082326	5.9621889240826	5.97245242350696	5.65930495796914	0.673640128607125	0.0434664331706034	0.212131565735569
Merged-chr13-37826991-8	chr13	37826819	37827019	+	878.745544	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033615)	promoter-TSS (NR_033615)	7.0	NR_033615	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.2644109008743	3.8104119266388	4.14719823551895	3.64778909924181	3.86413972774157	3.64079981226808	3.8555792015105	3.96790459912808	-0.391439118055554	0.416705143281642	0.710660934978501
Merged-chr5-139735774-4	chr5	139735681	139735881	+	813.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	552.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	3.43105576115369	3.5281009003482	3.66493531960323	3.60966376916413	3.49215456701647	3.83716020031976	4.01454614577721	3.81384636858533	0.704317912596828	0.147490919907114	0.428640216726625
Merged-chr8-84979383-2	chr8	84979283	84979483	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008416)	promoter-TSS (NM_008416)	-635.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	6.06381046376049	6.09187644533317	5.82375607482307	5.91844363230158	5.91460890849653	5.73448132190835	5.76999861787254	5.86700201398164	-0.235597549596291	0.338130442769544	0.647796331490298
Merged-chr11-59525442-4	chr11	59525340	59525540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16129.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	6.07763778421062	6.17287826008714	5.45046903632723	5.52120569349835	6.51079221426749	6.19129044350855	6.14628851461012	6.22967756154835	0.695998058831548	0.014501129814683	0.102398404670568
Merged-chr1-132477065-4	chr1	132476918	132477118	+	931.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172517)	promoter-TSS (NM_172517)	-349.0	NM_001357486	213464.0	Mm.132868	NM_172517	ENSMUSG00000026439	Rbbp5	4933411J24Rik|C330016J05	retinoblastoma binding protein 5, histone lysine methyltransferase complex subunit	protein-coding	4.17808481855618	4.23920355536587	4.03238037827236	4.33129926231852	4.36737539060901	4.1547896871558	4.16076783480531	4.30773124041829	0.111898433084639	0.778876159779149	0.913802853320572
Merged-chr15-79071847-4	chr15	79071753	79071953	+	927.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3370.0	NM_145139	223691.0	Mm.206404	NM_145139	ENSMUSG00000033047	Eif3l	0610011H21Rik|D15N1e|Eif3eip|Eif3ip|Eif3s6ip|HSP-66Y|PAF67	eukaryotic translation initiation factor 3, subunit L	protein-coding	3.99772706690105	4.32999174962379	3.99828026512891	4.12932021828265	4.35162811203349	4.1778662319808	4.27307989805614	4.81837237976107	0.733538985161042	0.0799088508458328	0.306176029195001
Merged-chr3-15332307-3	chr3	15332215	15332415	+	913.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001076679)	promoter-TSS (NM_001076679)	-13.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	4.83311947102529	4.24719166342131	4.73731166889187	4.8223323695153	3.95271711950231	4.47847651106279	4.23523449073386	4.0960926856728	-1.15082583327088	0.006002082773027	0.0542406026578678
Merged-chr5-147063514-3	chr5	147063426	147063626	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	13046.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	5.65464787767203	5.60063301805493	5.57117902165047	5.73390732621363	3.73586693283186	4.19309270940214	3.96891503766896	4.11635583139264	-3.97505264705675	1.54798221587022e-18	4.25420178159948e-16
Merged-chr3-152395944-4	chr3	152395871	152396071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287139)	promoter-TSS (NM_001287139)	-32.0	NM_001080755	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	7.40950916399948	7.56532856752615	7.42056833516204	7.58307151745893	7.38342236513701	7.32713842047471	7.59753696005368	7.27124085392715	-0.136183864159572	0.449896376658083	0.734929420530334
Merged-chr10-96364011-4	chr10	96363906	96364106	+	768.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137799.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	3.88559414241123	3.78788898737483	3.71838744544603	4.18528833646979	4.11400337806869	4.15798049920718	3.97025939150985	4.16524988889792	0.466058968397217	0.300184498940878	0.61225295942824
Merged-chr3-126625308-4	chr3	126625229	126625429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	28378.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	6.5380706231887	6.36739875091672	6.48724791503068	6.81804448447866	7.0055638361052	6.68232377142011	6.89486845397658	6.9738177362095	0.453299966670018	0.0400520881610491	0.201902803343861
Merged-chr9-105395403-4	chr9	105395297	105395497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172461)	promoter-TSS (NM_172461)	35.0	NR_152139	66595.0	Mm.84941	NM_025651	ENSMUSG00000032567	Aste1	1100001A21Rik|AV006403	asteroid homolog 1	protein-coding	8.28107487743823	8.65404830914429	8.41797339683922	8.48623618998458	8.84778506316321	8.85596149253874	9.0232155840415	8.53958360220782	0.450487915430338	0.00884574879730605	0.0722137347910824
Merged-chr5-76183885-4	chr5	76183792	76183992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011626)	promoter-TSS (NM_011626)	12.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	7.07124114985248	7.08515168396098	7.17952727877798	7.29991404882352	7.25909427817906	7.3791041021743	7.57210362069712	7.17449832612559	0.24610577303991	0.200377479632844	0.502485838102051
Merged-chr15-63617562-3	chr15	63617506	63617706	+	789.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137998.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	2.86430815894871	2.78520037802661	2.99192395770819	3.26859478227531	2.89932092663962	3.03723320341357	3.09558875945604	3.04958681617439	0.0619476169998621	0.920927027807659	0.970697193120266
Merged-chr2-102863735-3	chr2	102863681	102863881	+	608.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 2 of 13)	intron (NM_001039150, intron 2 of 13)	37884.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.3607082167058	3.23483153110606	3.36118393430416	3.04208081733038	3.21434841992953	3.42032459752773	3.05046814568523	3.35925998969878	0.076164810990752	0.890977928338135	0.959254414522706
Merged-chr7-135705314-4	chr7	135705205	135705405	+	829.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081117, intron 7 of 13)	intron (NM_001081117, intron 7 of 13)	11074.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	4.73590550016019	4.91707943405024	4.66229980678659	4.11601256558958	4.61636704221307	4.63137521414267	4.56200566822803	4.62037232209676	-0.042931841208984	0.914111841439328	0.967873172075434
Merged-chr8-35394296-4	chr8	35394187	35394387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18546.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	6.68551221895149	6.84346562397242	7.06599603417146	7.24271148650133	6.75757321552512	6.73189174111906	7.0872768650841	7.04928146838615	-0.105674416804522	0.637783148966692	0.846954603736943
Merged-chr19-47538988-4	chr19	47538892	47539092	+	937.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER67A|LTR|ERV1	-1873.0	NM_175360	108689.0	Mm.218048	NM_175360	ENSMUSG00000042694	Stn1	0610009H20Rik|2310057J23Rik|AAF-44|AAF44|AI413458|Obfc1|RPA-32	STN1, CST complex subunit	protein-coding	5.03395314951564	5.14020279173815	4.74798359454339	4.84599560203869	5.13781559324374	5.00015988346834	4.72596459361322	4.61859309647012	-0.0989830913454653	0.775302088564239	0.912320643528997
Merged-chr8-83200368-3	chr8	83200238	83200438	+	827.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111304, intron 1 of 20)	intron (NM_001111304, intron 1 of 20)	34986.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	2.9995160336314	3.00356763013365	3.16995044472445	3.12351486761542	2.87122167396696	2.97919710161111	2.98931976644843	2.93646205365634	-0.585579750028987	0.316494486663617	0.628459551030229
Merged-chr4-63562394-4	chr4	63562294	63562494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144905, intron 2 of 9)	intron (NM_144905, intron 2 of 9)	2167.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	6.06725959484529	5.90811152732777	5.79791320467247	6.48290504903579	5.88230705708641	5.72900352613276	5.97526679397596	5.81866049297378	-0.407870278183241	0.141054842826777	0.417798729724146
Merged-chr9-104277736-3	chr9	104277633	104277833	+	838.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14803.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	3.17156602842742	3.16045548182288	2.98461815069193	3.02264181103566	3.17428987468505	3.22290457310713	3.21624778978749	3.28153284089258	0.543051865601806	0.31769174432402	0.629592752581639
Merged-chr4-55534117-3	chr4	55533990	55534190	+	901.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1615.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	3.87866105091411	3.63521482419312	3.33878622272006	3.55913222677734	3.46744325082107	3.64248185392775	3.6738566151397	3.87679665234671	0.171569237420869	0.73225320023622	0.893952343664963
Merged-chr17-35868365-4	chr17	35868251	35868451	+	902.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175242, exon 1 of 3)	exon (NM_175242, exon 1 of 3)	1736.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	5.15575383029995	5.22656005714659	4.75478595550634	4.93160929851475	5.4364380939519	5.44759900525926	5.03417829617437	4.66343560052608	0.3068525503742	0.389001690187439	0.689363154966003
Merged-chr2-91272996-4	chr2	91272876	91273076	+	990.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001311144)	TTS (NM_001311144)	7861.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	5.44031597608545	5.60555189768353	4.98595128763274	5.44445308490031	5.92569272140076	5.52689809168048	5.76950504291072	5.77262123296351	0.621153410541338	0.0319902759536411	0.174739916514789
Merged-chr3-9913473-4	chr3	9913375	9913575	+	723.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79796.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.01059524216136	4.05415427316188	4.23528919577446	4.23376013499267	3.60909493262881	4.1839305921195	4.21559976630713	3.73824199260008	-0.493282155034137	0.287635927212225	0.599485759634544
Merged-chr7-6362768-4	chr7	6362630	6362830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025163)	promoter-TSS (NM_001025163)	-578.0	NM_001025163	330463.0	Mm.136456	NM_177888	ENSMUSG00000055150	Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding	9.34695034866184	9.25117652502028	9.09654215327802	9.03469853511936	9.47155689528412	9.50137366852452	9.49808644970279	9.13770036252847	0.278292466275062	0.0810424572416512	0.308823869800497
Merged-chr10-85587946-2	chr10	85587856	85588056	+	942.666626	f0_c57.idr|f1_c57bl6.idr	intron (NM_028709, intron 3 of 16)	intron (NM_028709, intron 3 of 16)	-10455.0	NM_001017525	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	3.1338180470593	3.03777432979279	3.29937883308703	2.45542479343482	4.69509642365254	4.16916807974341	4.38104037552293	4.8001571624571	6.91806432861164	2.48108306501248e-17	5.79019709785323e-15
Merged-chr9-15126184-3	chr9	15126082	15126282	+	937.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-14074.0	NM_001164797	244698.0	Mm.325134	NM_001164797	ENSMUSG00000031936	Hephl1	Gm509|Zp|zyklopen	hephaestin-like 1	protein-coding	3.94258144402832	3.8912585594412	3.80483480150631	3.99407937893295	3.56104277720685	3.52346898499518	3.57993176884531	3.53283484054324	-1.13856629241695	0.0160596330951799	0.109935432206367
Merged-chr13-42061055-2	chr13	42060954	42061154	+	682.5	f0_balb.idr|f0_c57.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	9033.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	3.90321240503106	3.82857246562484	3.38895652750114	3.74659301835003	3.85497444443321	3.87346586270871	4.17714023724127	3.64061199550403	0.481907875070014	0.321737106757101	0.633236874703318
Merged-chr5-64269689-4	chr5	64269597	64269797	+	984.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 5 of 18)	intron (NM_001289514, intron 5 of 18)	39340.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	5.69044750046427	5.16755537027605	5.89483662954543	6.2717024496984	5.30206100586566	5.04786994102753	5.6623478520537	5.58533782976424	-0.687672309280673	0.0505868806791359	0.233289112840458
Merged-chr19-40678683-4	chr19	40678572	40678772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	18902.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	7.83343474362782	7.78229812177144	8.61508439239143	8.49160542184527	7.73034047006281	7.42159532839948	8.21315984114399	7.91903503170041	-0.494219047927325	0.0517593518125183	0.236529205358451
Merged-chr12-84038835-2	chr12	84038735	84038935	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_134247, exon 1 of 3)	exon (NM_134247, exon 1 of 3)	456.0	NM_134247	171282.0	Mm.482217	NM_134247	ENSMUSG00000052392	Acot4	B430212I04Rik|PTE-Ib|Pte1b|Pte2b	acyl-CoA thioesterase 4	protein-coding	2.80049636516538	2.76958252398861	2.86341770524141	2.7455469060921	2.77865077661653	2.90739623652964	2.85318177875444	2.97824995878808	0.398313292539971	0.50839189240542	0.773487228743275
Merged-chr14-87417730-3	chr14	87417663	87417863	+	834.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253755, intron 1 of 11)	intron (NM_001253755, intron 1 of 11)	1180.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	3.34145437192839	3.59516807969564	3.56392662356084	3.32671119131269	3.55579913433273	3.57264341807873	3.26896479311138	3.45578840632378	0.0499838804771948	0.922349824566363	0.971254355541226
Merged-chr7-45562375-3	chr7	45562274	45562474	+	879.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025330, intron 5 of 8)	intron (NM_025330, intron 5 of 8)	7446.0	NM_025330	66065.0	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	3.94498340127214	3.62015073615956	3.63972444922832	3.53364486302305	3.37556964967624	3.13025179145084	3.46821377380685	3.23516266809738	-1.29085166627073	0.0186607640038562	0.122248190915094
Merged-chr15-90679423-4	chr15	90679346	90679546	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025815)	promoter-TSS (NM_025815)	-58.0	NM_001357979	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	5.63880927120192	5.78621814765809	5.6886214034027	5.89162857523923	5.23283775135668	5.37667960058385	5.36634594448647	5.15845199431035	-0.840134074859495	0.00220778766855312	0.0252446776642478
Merged-chr7-63937788-4	chr7	63937688	63937888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	CpG	1127.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	8.12888466566145	8.2477165364561	8.27466318417972	8.1888721164361	8.38139147748407	8.26240281194908	8.59323078696115	8.16252812332467	0.191892273033027	0.246098078279556	0.557351971550496
Merged-chr3-139025266-4	chr3	139025174	139025374	+	983.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 2 of 13)	intron (NM_001356388, intron 2 of 13)	49927.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	5.11182668277985	5.12135903238312	5.04696228329939	5.06655822377216	5.26258474177233	5.31629009695635	4.88114416373468	4.65309888881924	-0.0425776609837138	0.898207054176652	0.962065897194415
Merged-chr10-77519347-4	chr10	77519252	77519452	+	894.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3539.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	4.67723406537717	4.54160231573639	5.12378775931505	4.39802672959215	4.70536350977713	4.5089521837735	4.6174378760432	4.51226664177945	-0.230212951408077	0.551411105231798	0.79892812604468
Merged-chr11-69881019-4	chr11	69880919	69881119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153143)	promoter-TSS (NM_153143)	-34.0	NM_153143	216858.0	Mm.239498	NM_153143	ENSMUSG00000046731	Kctd11	AF465352|Ren	potassium channel tetramerisation domain containing 11	protein-coding	6.41594879978538	6.28231714048778	6.3996574963567	6.64793192868396	6.3301558127329	6.2376767113421	6.43488914623432	6.46332955740241	-0.130997186745695	0.5601008256736	0.804203083823139
Merged-chr2-33986589-4	chr2	33986487	33986687	+	882.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98641.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	4.44868208020112	4.29826737245013	4.11299654497171	4.10691447946957	4.822505937912	4.39713084505248	4.91051659805661	4.48816775329187	1.00196264379766	0.00924698904376331	0.0746164191300338
Merged-chr2-127248603-3	chr2	127248534	127248734	+	940.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025296)	promoter-TSS (NM_025296)	659.0	NM_175145	69470.0	Mm.200889	NM_175145	ENSMUSG00000034850	Tmem127	2310003P10Rik|AI314202|AI317350	transmembrane protein 127	protein-coding	4.15374374158474	4.19732905721712	4.15439076986419	3.84499466247793	3.86741088076126	3.98213955764543	3.8982278989815	4.23636869130754	-0.222761102954446	0.610679517638603	0.831851291499179
Merged-chr2-71042058-4	chr2	71041937	71042137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	Lx8|LINE|L1	13569.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	5.89310143495621	5.47000067322608	5.26177426107263	5.83240062788532	5.57180104384685	5.50587107626003	5.48172298728419	5.63871636860996	-0.168819605268245	0.561502766158029	0.80494560024742
Merged-chr18-55125091-3	chr18	55124986	55125186	+	859.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132495.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.45330255295368	2.98537876287217	3.07199005073682	2.98459944952748	3.35884737218062	3.68102350477549	3.68738659066816	3.7904456848744	1.77631910249292	0.0013795094128552	0.017466777961608
Merged-chr11-107132175-4	chr11	107132038	107132238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176850)	promoter-TSS (NM_176850)	-216.0	NM_001359590	207165.0	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	6.06856548958017	6.28592786070686	6.06963673542763	6.07539618549407	6.58361687426537	6.35091398033283	6.53603183640152	5.97452198095935	0.397997268077799	0.105030276122761	0.356433758675821
Merged-chr3-51208902-4	chr3	51208800	51209000	+	893.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B|LTR|ERVK	-15547.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	5.57088878958904	5.32966588777092	5.16447317116047	4.90213891705972	5.42438455251464	5.13335760554738	4.93225507583596	4.83435095763049	-0.259072644856396	0.459396018964959	0.741935750561435
Merged-chr5-121848943-4	chr5	121848848	121849048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359949)	promoter-TSS (NM_001359949)	-49.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	6.69217154413355	7.03445976817627	5.88527232673342	6.28366901049577	6.59601721128197	6.71857080239126	6.39193174808986	6.21034130187087	-0.0725535798149091	0.807523342749756	0.925788142750869
Merged-chr3-36533516-3	chr3	36533410	36533610	+	881.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12065.0	NR_040411	100503068.0	Mm.389423	NR_040411	ENSMUSG00000085007	Gm11549	-	predicted gene 11549	ncRNA	4.18769597384014	4.12081339417444	4.48954953699353	3.91930321304419	3.7990010281357	3.85491403286822	3.88749234394671	3.95315358616249	-0.847011359077966	0.0599770717899606	0.258404938740851
Merged-chr12-55491939-4	chr12	55491861	55492061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010907, intron 1 of 5)	intron (NM_010907, intron 1 of 5)	686.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	8.71927164869851	8.83961901083677	8.66484365477992	8.51426962306573	8.60405658667919	8.78894859097339	8.75420264895059	8.2222853187468	-0.0957227736915856	0.595359720817184	0.823889334925232
Merged-chr1-88701215-4	chr1	88701126	88701326	+	940.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177305, exon 1 of 1)	exon (NM_177305, exon 1 of 1)	965.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	4.64384260185016	4.22435675688538	4.8704561648114	4.22987918908869	3.99461977852645	4.40712668637347	4.25873172031383	4.45092641448033	-0.535436861830341	0.212421302903594	0.517371498007674
Merged-chr2-172440024-2	chr2	172439924	172440124	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025542)	promoter-TSS (NM_025542)	-554.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	4.56587989154357	4.79210657426096	4.56664332487761	3.66965925366937	4.25747959215876	4.49348344314186	4.20356774761545	4.44499522873119	-0.250062516292791	0.597986297294015	0.825699210702461
Merged-chr10-121290177-3	chr10	121290079	121290279	+	967.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361015, intron 8 of 12)	intron (NM_001361015, intron 8 of 12)	21217.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	4.69538378372003	5.08331357140303	5.61423977669552	5.03284558663201	3.83255708388466	4.32006359836724	4.11072218401735	4.06597167597723	-2.460675790281	2.05086745197469e-08	1.026573096794e-06
Merged-chr11-114795514-2	chr11	114795414	114795614	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028055, intron 1 of 2)	intron (NM_028055, intron 1 of 2)	378.0	NM_028055	72014.0	Mm.38347	NM_028055	ENSMUSG00000000202	Btbd17	1500005I02Rik|Tango10a	BTB (POZ) domain containing 17	protein-coding	3.37373769391264	3.33845633321343	3.57187464801903	3.15854309398624	3.19503938073081	3.04196000684143	3.30655197113128	3.20115341110478	-0.633106082539932	0.258472673063084	0.570369121898476
Merged-chr15-51803458-4	chr15	51803386	51803586	+	882.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080635, intron 2 of 7)	intron (NM_080635, intron 2 of 7)	61975.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	3.92151268850347	4.15234749910474	4.29852619679763	4.05435106655324	4.19535376218773	4.04448716825808	4.39406580507722	4.02460499995751	0.167951193517824	0.685875544709521	0.871706729700544
Merged-chr14-59260241-4	chr14	59260111	59260311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164329)	promoter-TSS (NM_001164329)	5.0	NM_001164329	628693.0	Mm.479519	NM_001164329	ENSMUSG00000090881	Gm6904	EG628693	predicted gene 6904	protein-coding	5.86063482071558	5.77186526712397	6.13733853908523	6.05192058089238	5.79568864564216	5.74895653393891	5.98680455466441	6.11376993675248	-0.0817618555020314	0.748099856580272	0.900815396053715
Merged-chr16-65561629-2	chr16	65561529	65561729	+	804.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026879, intron 1 of 5)	intron (NM_026879, intron 1 of 5)	1068.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	3.13728924893271	2.86565811938252	3.24166523881045	2.94669466169215	2.67375552774034	2.8713536262272	2.89070258560856	3.08065388221523	-0.73433460300165	0.246246690499262	0.55750034581202
Merged-chr6-84587730-4	chr6	84587599	84587799	+	836.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177713, intron 2 of 6)	CpG	6111.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	4.05821604280799	4.49444093415258	4.00740323591181	4.02260257454933	4.28839389462119	4.2814812062721	4.09078838249004	4.24350532221076	0.177062219791506	0.670620508352026	0.8642024686037
Merged-chr10-14053234-4	chr10	14053146	14053346	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	86867.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	5.87643264658545	6.31496346293575	5.70556388075169	5.89804324646737	6.11702525324479	6.0062089122237	5.6233474194446	5.30509002677443	-0.255636049030056	0.406652410206803	0.703051260897899
Merged-chr8-40511805-4	chr8	40511759	40511959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011135)	promoter-TSS (NM_011135)	76.0	NM_033560	52348.0	Mm.489696	NM_033560	ENSMUSG00000031600	Vps37a	2210018P21Rik|4930592A21Rik|AW261445|D8Ertd531e	vacuolar protein sorting 37A	protein-coding	7.42300614062724	7.62854910274677	7.92640983195686	7.57487648288898	7.5317453081561	7.60169528973	7.44573541458354	7.45836156832427	-0.181293786610631	0.328865478015196	0.640144325858488
Merged-chr7-133186477-3	chr7	133186386	133186586	+	695.883362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	58235.0	NR_046279	74970.0	Mm.491044	NR_046279	ENSMUSG00000109816	4930483O08Rik	-	RIKEN cDNA 4930483O08 gene	ncRNA	3.96376238639999	3.91123270398504	4.05003717873737	3.55635470989702	3.40354287280092	3.72808952938934	3.70572910418415	3.71875648943228	-0.70839645442769	0.154239234646223	0.439444149764552
Merged-chr9-57646825-4	chr9	57646733	57646933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	MIR|SINE|MIR	-1180.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	6.54620069698716	6.57307120816383	6.54735791409087	6.91573266725335	6.20866358206347	6.19221350760813	6.4976625388169	6.84304474926116	-0.302722780761546	0.227190762085403	0.53590860802553
Merged-chr15-34336416-4	chr15	34336319	34336519	+	890.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358780, intron 2 of 18)	intron (NM_001358780, intron 2 of 18)	21453.0	NM_001256161	77358.0	Mm.402759	NM_001256161	ENSMUSG00000094447	9430069I07Rik	-	RIKEN cDNA 9430069I07 gene	protein-coding	5.08083793027917	5.76362816826049	5.48250011436829	5.74046780092394	4.23591229212065	4.6375883714879	4.71500803951952	4.81873791536417	-1.8639661163204	3.13486645954667e-07	1.21138251750311e-05
Merged-chr16-52097008-3	chr16	52096910	52097110	+	726.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	Lx3C|LINE|L1	65461.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	3.18512684104988	2.91431670754571	3.34289708473141	3.09403553525283	3.00436779667861	3.11544739545403	3.05781391897005	3.06717825975619	-0.317709400751282	0.582008079262568	0.816501953640427
Merged-chr6-42421694-4	chr6	42421606	42421806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12829.0	NM_207028	387353.0	Mm.377914	NM_207028	ENSMUSG00000048284	Tas2r126	T2R12|T2R26|Tas2r26|Tas2r41|mGR26|mt2r35	taste receptor, type 2, member 126	protein-coding	7.37282139151965	7.43586953082975	7.34372033834401	7.37395087148506	7.38567681720061	7.51029159867399	7.23378947009632	7.38880435133806	-0.0004074033145825	0.998139391017846	0.999131558936114
Merged-chr12-77047438-1	chr12	77047338	77047538	+	819.25	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-85190.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	4.11238664138471	4.0185392652715	4.11302788544211	4.08267610638541	3.77231224175248	3.69639294232587	4.33064043177631	3.70155650357338	-0.483411898561384	0.29797791806204	0.610164772946546
Merged-chr10-25318575-4	chr10	25318450	25318650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19387.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	7.3392043716953	7.72692328040158	7.57449917280851	7.86883194007587	7.77998886198878	7.53932339231309	7.63939971926708	7.40820545311579	-0.0646222623683626	0.74344378056194	0.89894073126818
Merged-chr5-105620673-4	chr5	105620581	105620781	+	961.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79288.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	4.98877762221947	5.54533962263171	4.66441610177779	4.69053776483425	5.48582142282255	5.53331942670445	4.96535314337794	4.79272960485516	0.39849552142054	0.315874617220103	0.627754059054883
Merged-chr14-13961149-4	chr14	13961044	13961244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359900, intron 1 of 8)	CpG	169.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	5.51322840095351	5.53896963940036	6.30690536254514	5.82676371037812	5.20927737570745	5.63346746956847	5.39906146362041	5.32812839758064	-0.748036882419239	0.0173707860376785	0.116381323359932
Merged-chr9-96759289-4	chr9	96759189	96759389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6273.0	NR_102295	319707.0	Mm.392191	NR_102293	ENSMUSG00000101581	C430002N11Rik	-	RIKEN cDNA C430002N11 gene	ncRNA	5.72998994780507	5.32350991191743	5.0446506384852	5.70021977742882	5.45204607941769	5.62286375985322	5.53029184839318	5.65587433472023	0.120465105069974	0.691334437112081	0.874444572967993
Merged-chr1-13336042-4	chr1	13335955	13336155	+	937.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	36374.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	4.09313951605364	4.02890258758386	4.67389070578147	4.45754669397638	4.36643073958322	4.05081821996631	4.39626913439966	4.53044679644489	0.0128226473293235	0.975988759366996	0.991438232740523
Merged-chr15-58273124-4	chr15	58273032	58273232	+	846.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51037.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	3.89012616200902	3.74556529906552	4.13088876150908	4.01255121220874	3.84660786797557	4.01270197653518	4.19601905363994	4.2128329700842	0.308448548463607	0.479988033748926	0.755630297125111
Merged-chr16-13796811-4	chr16	13796722	13796922	+	973.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039521, intron 10 of 17)	intron (NM_001039521, intron 10 of 17)	16123.0	NM_001039521	106298.0	Mm.288606	NM_001039521	ENSMUSG00000022682	Rrn3	AL023001|E130302O19Rik|R75565|TIF-1A|Tif1a	RRN3 RNA polymerase I transcription factor homolog (yeast)	protein-coding	4.89682595997337	4.80563730970192	4.78603999039765	5.05541349672327	4.90536866933993	4.70902373231282	4.94291820402927	5.1216484807642	0.0496738686509909	0.880331181197543	0.95517036814656
Merged-chr9-70007997-1	chr9	70007897	70008097	+	835.25	f0_balb.idr	3' UTR (NM_016787, exon 11 of 11)	3' UTR (NM_016787, exon 11 of 11)	-4551.0	NM_001282084	235459.0	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	4.04433177460224	4.18303724989508	3.7228900735511	3.78983402718002	3.41905778072867	3.47823627929115	3.54310897003004	3.86964785902255	-1.13374215222338	0.0260287407233243	0.152560913697752
Merged-chr6-34217013-4	chr6	34216858	34217058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39904.0	NM_021435	58246.0	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	4.35442672881796	4.44143976038451	4.56810087107207	4.70446614307416	4.46670703510599	4.33567537226961	4.38112384139797	4.84485927631801	-0.0292187872761458	0.939263969368502	0.978039850720198
Merged-chr15-35150475-4	chr15	35150360	35150560	+	823.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357821, intron 1 of 11)	Lx7|LINE|L1	5346.0	NM_001357821	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	3.89126999873367	3.47307717346427	3.43642233635289	3.55620578186821	3.76838527638692	3.7244972946496	3.64385676019429	3.23968912595768	0.0483742164570418	0.926543985762764	0.973020473242623
Merged-chr5-139150072-4	chr5	139149974	139150174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081265)	promoter-TSS (NM_001081265)	-73.0	NM_001359098	19085.0	Mm.306163	NM_008923	ENSMUSG00000025855	Prkar1b	AI385716|RIbeta	protein kinase, cAMP dependent regulatory, type I beta	protein-coding	8.34249116213079	8.5202347077299	8.11640076772015	8.15436044019491	8.63283911227098	8.54333787527178	8.3582953893227	8.47308275511412	0.274111956792182	0.10624289197571	0.359240505270803
Merged-chr3-98024574-4	chr3	98024482	98024682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	11044.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	6.40141783136143	6.86425301167401	6.66529692217044	6.79605779764997	6.39663290986271	6.25057044720484	6.57085614719903	6.61531542134593	-0.343529052574212	0.127728995048425	0.397662410753708
Merged-chr4-41738159-4	chr4	41738061	41738261	+	781.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001286551)	TTS (NM_001286551)	3198.0	NM_001286540	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	3.37067185559957	3.31349277284124	3.64123996567818	3.6769182710671	3.50036170187098	3.48417510168973	3.57677081036441	3.42807101122314	-0.0710524544171987	0.889147340998559	0.958460693333562
Merged-chr16-36632350-4	chr16	36632257	36632457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	L1MB3|LINE|L1	33720.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	7.7090037257118	7.8745184873415	7.84060071223951	7.57587741067187	7.55171954739209	7.70542780608415	7.73552573221264	7.4357776453002	-0.181890398315376	0.31050658921971	0.622616866559057
Merged-chr15-88248344-3	chr15	88248235	88248435	+	897.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66539.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	3.91871963390172	3.82850385769215	4.47016763804678	4.29792542815342	3.02706206397712	3.24779675411027	3.19751446716814	3.42038377381561	-3.48420686678002	1.21769872197774e-07	5.14389182977172e-06
Merged-chr4-153958063-4	chr4	153957966	153958166	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163019, intron 1 of 2)	intron (NM_001163019, intron 1 of 2)	829.0	NM_001163019	97159.0	Mm.7066	NM_175287	ENSMUSG00000047613	A430005L14Rik	C79672	RIKEN cDNA A430005L14 gene	protein-coding	4.71405028168334	4.47459977323476	4.4164932634836	4.68161291305651	4.75606796349683	4.92405441455183	4.6925927640983	4.953047339873	0.517064702720666	0.135212271187431	0.409351973580459
Merged-chr18-36713013-3	chr18	36712954	36713154	+	571.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	13761.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	3.03731994177279	2.89217660634203	3.29785656933594	3.32820168734822	3.32158259917544	3.63311544980339	3.44947342558994	3.60908403859462	1.20848954483599	0.0376456975026706	0.193933784652428
Merged-chr10-17947772-2	chr10	17947672	17947872	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033432, exon 1 of 4)	exon (NM_001033432, exon 1 of 4)	295.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	4.67148302312447	4.43414067595694	4.47275893340419	4.49959092998953	4.68404252731138	4.68798584199552	4.36430971860597	4.66915216982696	0.203182925242266	0.569809153489383	0.809561615168898
Merged-chr2-60209272-4	chr2	60209187	60209387	+	856.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020575)	promoter-TSS (NM_020575)	-649.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	3.71710836160026	3.77601237543004	4.19574107952075	3.85856153316375	3.6712184921375	4.10227663720191	3.91383121778221	4.06755416709221	0.126860377283362	0.783364978105889	0.915636043192861
Merged-chr6-38939937-4	chr6	38939838	38940038	+	811.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	RLTR17B_Mm|LTR|ERVK	20952.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	4.25440149705811	4.37628033059187	3.92057228514102	4.0979749927353	4.31766660291291	3.92778946535656	3.95793783828551	4.20967605109074	-0.123375683238686	0.774559367885246	0.911896677859441
Merged-chr3-144044642-4	chr3	144044555	144044755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	157677.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	7.35002794351258	7.43608841120333	7.44023394231841	7.38696713638946	7.55575416621029	7.45467782281373	7.4222724218812	7.22818729315968	0.0302094177302371	0.864721097662036	0.949259454202437
Merged-chr15-97422764-4	chr15	97422678	97422878	+	840.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175491.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	4.20477246267803	3.98980691585687	4.16236264364544	3.86211641468309	4.25297993724586	3.68001595091174	3.95731163176003	4.32356045408733	0.0862490944650638	0.849864955069751	0.943294572454113
Merged-chr6-51743570-3	chr6	51743488	51743688	+	859.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	198295.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	3.98926634837563	3.87691415669447	3.94030668702296	4.01491998950693	4.48352773003985	3.95592453901649	3.92402448610939	3.83306923414333	0.354573365494673	0.436114483778105	0.724990940109308
Merged-chr14-76072775-4	chr14	76072664	76072864	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38051.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	3.96621467129771	3.67039399914489	3.80981610204083	3.96908828519368	3.90444707457594	3.68663068791642	4.46278032847142	4.26946495827826	0.66638441978367	0.161560602160896	0.450439565264803
Merged-chr1-86363912-4	chr1	86363815	86364015	+	844.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015507, intron 1 of 1)	B2_Mm2|SINE|B2	4341.0	NR_015507	319336.0	Mm.389155	NR_015507	ENSMUSG00000073627	C130036L24Rik	-	RIKEN cDNA C130036L24 gene	ncRNA	4.1119190810963	4.3694949786089	4.01466313159539	3.87714767991055	3.99250461895569	4.28502959999759	4.38473791300887	3.90672765907998	0.138915266981162	0.751817193373194	0.902299791041859
Merged-chr19-45652564-4	chr19	45652467	45652667	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 1 of 8)	intron (NM_013907, intron 1 of 8)	7626.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	5.3782174382492	4.91683922674936	4.87313069233279	5.42950761919708	4.91118968151224	4.88796619564986	4.99553083772612	5.17860471692065	-0.367719253192613	0.276391324649982	0.588455913414127
Merged-chr12-54823090-4	chr12	54822985	54823185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27423.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	5.69972083858008	5.30743353694977	5.72551102196548	6.59092583914561	5.37762843806094	5.33027178450203	5.48443246409842	5.74569489566637	-0.743110302388329	0.0401885471591862	0.202361389236256
Merged-chr13-102700358-4	chr13	102700263	102700463	+	990.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360519, intron 1 of 2)	intron (NM_001360519, intron 1 of 2)	6805.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	4.72618226818684	4.95211149871328	4.98097874559895	4.90023133030328	4.68346073903023	4.82067635171524	4.88978974359262	4.97758833936252	-0.111074667005874	0.733945346016575	0.894699362632536
Merged-chr2-167367555-4	chr2	167367444	167367644	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18366.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	4.25415363910475	3.79845440727005	4.69019221836111	4.90413338258201	4.64142832363553	4.06248732246265	4.48912676078237	3.9349152936797	-0.380718445503792	0.460054482441487	0.742359456954106
Merged-chr2-24316985-4	chr2	24316872	24317072	+	730.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-19888.0	NM_031167	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	3.56553756935911	4.17785423701266	3.96193303628842	3.80768397558312	4.09179263042826	3.8109831549771	4.16598269710711	4.0981206558412	0.419185557258719	0.359893856192611	0.66558108475197
Merged-chr7-98328524-4	chr7	98328421	98328621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger9a|DNA|TcMar-Tigger	-7313.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	6.52491620377074	6.65882212503396	6.72264164529596	6.77365617437118	6.33275289919124	6.25835389436954	6.44286071287783	6.4882502565269	-0.435760899375761	0.0397465267283271	0.200988777067036
Merged-chr6-89449478-2	chr6	89449378	89449578	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	MTB_Mm|LTR|ERVL-MaLR	-86865.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	3.16546767766589	3.21242747756866	3.10321297250635	3.00196657666084	3.31239051139625	3.39616034535186	3.26993284746591	3.33563803439175	0.807521799475138	0.128203523587908	0.398448212663338
Merged-chr17-46328041-4	chr17	46327928	46328128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170680)	promoter-TSS (NM_170680)	-5.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	7.42249588833889	7.09133659206952	7.20678160233958	7.27211687965401	7.2875026610855	7.46029882346497	7.39638011055953	7.35042695286773	0.159984622829834	0.378658168493353	0.681198988427369
Merged-chr11-120902732-3	chr11	120902677	120902877	+	989.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 6 of 18)	intron (NM_027745, intron 6 of 18)	30095.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	3.55099096715637	3.32423668007021	3.18989521400313	3.40293884491266	2.97523394595557	3.17220989613072	3.23682198299139	3.18833760414762	-0.912850864127438	0.104963355126993	0.356364734299273
Merged-chr6-71831784-4	chr6	71831664	71831864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362138, intron 1 of 13)	CpG	444.0	NM_001253686	76614.0	Mm.235123	NM_029673	ENSMUSG00000052337	Immt	1700082C19Rik|D830041H16Rik|HMP|P87|P87/89|P89	inner membrane protein, mitochondrial	protein-coding	8.00415372402385	8.02109111186589	8.0121872037687	8.15599598382412	7.81736940942636	8.05561666300916	8.02614200512491	7.82727991733458	-0.15866465450906	0.332204782166223	0.643236152166958
Merged-chr4-95248258-1	chr4	95248158	95248358	+	756.0	f0_balb.idr	Intergenic	Intergenic	-196036.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	3.26144721561972	3.19224368515846	3.60233029297235	3.28000489409317	3.10889024027621	2.98314559951564	3.13392329717802	3.01553966566051	-1.08207619037648	0.062755234941971	0.265457590059699
Merged-chr11-53933505-4	chr11	53933409	53933609	+	877.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-41806.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	4.18227426221321	4.04480872243823	3.60750120292903	4.14519512345713	3.9368325937527	4.17324964770005	3.93573439995032	4.13740330732398	0.064879137083579	0.885390491720437	0.956984644600969
Merged-chr14-70894169-6	chr14	70894095	70894295	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302095, intron 1 of 6)	intron (NM_001302095, intron 1 of 6)	4088.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	4.4046559058139	4.45499436726179	4.90010562777054	4.39606041074568	4.80689019785162	4.79133461830134	4.59735788925047	4.44818112171273	0.280015703299461	0.454261656585726	0.73809871605258
Merged-chr11-69401387-4	chr11	69401298	69401498	+	969.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017426, intron 17 of 22)	intron (NM_001017426, intron 17 of 22)	-3164.0	NM_025915	67020.0	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	5.07167008881106	4.94738996424512	4.5446035961451	4.15052065244496	5.15777795285332	4.97337302192617	4.98436616435792	5.00572225101746	0.645471855352199	0.0965498969929047	0.340449603532974
Merged-chr9-95603077-4	chr9	95602980	95603180	+	960.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34548.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	4.11640829960043	4.43510649511098	4.01236764306843	4.17196193679737	4.59965943253834	4.02202904553645	4.40773392126427	4.464293888172	0.48928515089746	0.236053474503715	0.546088477044331
Merged-chr7-24851088-3	chr7	24850999	24851199	+	889.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	18592.0	NM_182785	232973.0	Mm.189648	NM_182785	ENSMUSG00000062732	Lypd4	4933400F01Rik	Ly6/Plaur domain containing 4	protein-coding	4.15768198815577	3.8134978894762	4.01805582679839	3.88719772504564	3.92328938021994	4.60172490656177	3.95100235199755	4.01563614291871	0.465537008978328	0.305290917119617	0.617706648559005
Merged-chr17-67260638-3	chr17	67260541	67260741	+	884.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	93818.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	3.43257981339931	3.25624219203877	3.37497349847434	2.95240654859483	3.95288021896086	3.22773963741098	3.6729529622954	3.53990836478084	1.26883241469087	0.0249939680331416	0.148425395703022
Merged-chr11-6523852-4	chr11	6523769	6523969	+	822.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-2911.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	3.79876915979711	3.87421525559716	4.09039722125628	3.12939259452187	4.24693978842012	4.07836192245753	4.07123144819287	3.68400172185998	0.734424542680099	0.17615990006286	0.471156409520697
Merged-chr6-82766690-4	chr6	82766581	82766781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	7773.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	6.11369549551221	6.01956895336177	6.21196570853616	6.01110703294034	6.17624632704609	6.18506780063809	6.10344995786433	5.8161750662378	-0.00214681983977028	0.992832699155502	0.997428952212241
Merged-chr17-36951150-4	chr17	36951044	36951244	+	975.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029632, intron 1 of 2)	intron (NM_029632, intron 1 of 2)	648.0	NM_029632	76497.0	Mm.46176	NM_029632	ENSMUSG00000036398	Ppp1r11	1500041B02Rik|AV117883|Hcgv|Tcte5|Tctex-5|Tctex5	protein phosphatase 1, regulatory (inhibitor) subunit 11	protein-coding	4.68411560279819	4.71766827251549	4.8370447130838	4.50279760362218	4.91773845201893	4.64518230276521	4.97999325339595	5.03219926038533	0.473470162668425	0.162033068097412	0.45110625807392
Merged-chr6-13837128-4	chr6	13836966	13837166	+	837.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001330666, exon 4 of 4)	5' UTR (NM_001330666, exon 4 of 4)	2876.0	NM_001330666	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	3.61210505303132	3.6524511759009	3.6126021466044	3.91168206436764	3.59505954621281	3.49636071108422	3.30875721259236	3.61059174820884	-0.653890428728812	0.194351136945213	0.494755332451119
Merged-chr3-88102910-4	chr3	88102799	88102999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033484, intron 19 of 37)	intron (NM_001033484, intron 19 of 37)	20848.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	7.27437200829174	6.8873527556023	7.19094852920762	7.52310144695902	6.72957542750073	6.88022622763358	6.90170049967384	7.34980315601248	-0.362704142840928	0.123544229736028	0.389840957654186
Merged-chr10-34281532-3	chr10	34281408	34281608	+	873.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009433)	promoter-TSS (NM_009433)	-682.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	3.70657904994032	3.47205436687477	3.75912004189322	3.76734884667062	3.56328114681985	3.82610151711679	3.97302867770617	3.80685235171432	0.324335221631025	0.493392785065615	0.764142062450997
Merged-chr6-82805187-4	chr6	82805064	82805264	+	948.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER45B|DNA|hAT-Tip100	-30710.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	4.74162250036844	4.84184516328068	5.29390861891765	5.35697538609447	4.58445323247636	4.36414911311427	4.60022167457925	4.23020095346637	-1.33991969277794	0.000531679499544139	0.00811067618903821
Merged-chr11-45926879-4	chr11	45926761	45926961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18074.0	NM_028185	72290.0	Mm.249827	NM_028185	ENSMUSG00000044847	Lsm11	2210404M20Rik|AV079530	U7 snRNP-specific Sm-like protein LSM11	protein-coding	5.95753371010041	6.00395378966368	6.19927235262086	5.57890893182007	6.0022339265237	5.99508526327293	5.57582080795306	6.26567932494241	0.0700484863810132	0.806459860307834	0.925422083168378
Merged-chr10-80668923-3	chr10	80668800	80669000	+	819.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021462, intron 10 of 13)	intron (NM_021462, intron 10 of 13)	7393.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	2.82740176528591	3.15910881814323	2.59635180923614	2.33502870173974	3.54526941921136	3.26095419350485	2.95218728762725	3.02470879468959	1.81807005575325	0.0193055532392566	0.124967517106202
Merged-chr5-32747016-2	chr5	32746935	32747135	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347332)	promoter-TSS (NM_001347332)	-693.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	3.28591244036697	3.20897082412696	3.11496615625831	3.06463255785427	2.97601022767131	3.16234920830303	3.21904044137821	3.22995720950201	-0.0778392780873937	0.889024925171895	0.958423402481034
Merged-chr4-136185577-4	chr4	136185493	136185693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177733, intron 5 of 6)	intron (NM_177733, intron 5 of 6)	4811.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	5.34121978645756	5.60728848171003	5.06707058303021	5.36030787031837	5.69135938603725	5.66222951566091	5.61526584820023	5.42803772995796	0.420780608984295	0.140024710522717	0.416132430781438
Merged-chr16-38363277-4	chr16	38363167	38363367	+	706.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022318, intron 1 of 3)	Charlie24|DNA|hAT-Charlie	1077.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	3.6608746884461	4.01802993779837	3.55035195232619	3.52221757426433	3.58215355701729	3.77984037809421	3.74757962072965	3.48936832064865	-0.145943209843778	0.768827609457383	0.90948098608245
Merged-chr5-124629011-4	chr5	124628926	124629126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011596)	promoter-TSS (NM_011596)	-26.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	7.42915935135342	7.43850510482671	7.04488407475116	7.19682923551935	7.4262231532726	7.40193315096861	7.40302132523897	7.3470654643487	0.149223130341854	0.42272070321971	0.714884771893479
Merged-chr4-141535446-4	chr4	141535341	141535541	+	878.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 1 of 14)	intron (NM_001347235, intron 1 of 14)	3156.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	3.95465237313082	4.52202915690321	4.28988434390547	4.14804301528456	4.42547369049434	4.021982101117	4.18426484628659	3.95301265180386	-0.183029745415143	0.675369469602097	0.866695335463305
Merged-chr6-54780753-4	chr6	54780639	54780839	+	959.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36177.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	4.66466227531506	4.87812425395863	4.66539251325011	4.87725602506724	5.29863574409105	4.92946566094007	5.28713623692718	5.33666173719167	0.847922133510955	0.00838528335534534	0.0693776687144166
Merged-chr15-88876467-4	chr15	88876351	88876551	+	914.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14257.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	4.42475270794841	3.81601235679633	4.38607567308301	3.90600071176166	4.32268128542781	4.5949095717308	4.24055652141341	3.96129906650218	0.363389743677992	0.422976772702272	0.714938134013999
Merged-chr8-80338117-4	chr8	80338001	80338201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-155944.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	6.19763565742038	6.07054820603723	6.3233266090476	6.10087522083291	5.98522673214197	5.76430057566178	5.96539933473572	5.94695988410576	-0.384669705242502	0.106305964489121	0.359346167372899
Merged-chr4-53440246-4	chr4	53440149	53440349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159633)	promoter-TSS (NM_001159633)	-164.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	7.20439287967139	7.68792002838765	7.44263352977436	7.48948877117076	7.46860803498212	7.81902834251445	7.91326838927381	7.52281762004731	0.289052385060382	0.149967014241424	0.432360854406563
Merged-chr4-155571664-4	chr4	155571577	155571777	+	650.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355599, intron 1 of 10)	MLT1B|LTR|ERVL-MaLR	7862.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	3.17043791820294	3.61982650709249	3.63935737968886	3.36540181471183	3.4685496750627	3.48066043235288	3.62375971646726	3.58712761518867	0.268655560880575	0.601566184318656	0.827133488921953
Merged-chr16-32163640-4	chr16	32163530	32163730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146069, intron 1 of 3)	intron (NM_146069, intron 1 of 3)	1964.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	5.39630506068677	5.77871649285922	5.51750512237189	5.59814524827542	5.89059879966442	5.90230214248101	5.59906925507406	5.64950370447196	0.309804857591174	0.247942511022361	0.55911412865941
Merged-chr16-35919245-3	chr16	35919126	35919326	+	900.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19244.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	3.39018656384379	3.62140784037503	3.56832320641447	3.54766590729066	3.78258048545047	3.9396033038141	3.44020341955254	3.62055642537985	0.538299023226113	0.271738570029031	0.583313117889454
Merged-chr1-64446245-4	chr1	64446152	64446352	+	920.9874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86552.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	4.32949060943646	3.84293602816164	4.24202454657084	3.92759184552425	4.23812177051671	4.54308240030596	4.46846913567037	4.40973818408696	0.804920500464822	0.0492706369538096	0.229668282104467
Merged-chr10-93689028-4	chr10	93688913	93689113	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021320, intron 3 of 9)	intron (NM_021320, intron 3 of 9)	-5691.0	NR_038017	100504069.0	Mm.391412	NR_038017	ENSMUSG00000085723	Gm15915	-	predicted gene 15915	ncRNA	5.8572216573054	5.58009081174808	5.79439030794341	5.46841827858175	5.48811836623675	5.05733713415128	5.38729166594069	5.35004422801598	-0.574123959460092	0.0508204733716906	0.233769579560784
Merged-chr8-105636374-4	chr8	105636270	105636470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181322)	promoter-TSS (NM_181322)	-168.0	NM_181322	13018.0	Mm.269474	NM_181322	ENSMUSG00000005698	Ctcf	AW108038	CCCTC-binding factor	protein-coding	7.623215555247	7.98982210188511	7.63317419173264	7.36549655859628	8.01041890381345	7.86134867236629	7.52490767202029	7.62794807866701	0.140835882034954	0.504707017049735	0.770962524767326
Merged-chr15-79456624-4	chr15	79456492	79456692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14449.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	4.94359833554094	4.62403951220245	5.33080755568937	4.86626296011673	5.13311425992197	4.93365304615887	4.8125794185047	4.75424157966989	-0.0640550126273255	0.856238063735561	0.945878451904049
Merged-chr8-84660700-1	chr8	84660600	84660800	+	594.0	f0_c57.idr	TTS (NM_010499)	TTS (NM_010499)	2152.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	3.86456586669577	3.82976862969782	3.81640878028609	3.20050093784596	4.02455589104874	3.77808710452836	3.89450832746899	3.53911711491075	0.371809310933051	0.481122269889282	0.756395406923229
Merged-chr12-70910427-4	chr12	70910321	70910521	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27436.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	5.11607234259646	5.18009545036805	4.64748258437069	5.21505510645874	5.09102610443078	5.29053762065137	5.32847529784332	5.17735169585773	0.275388023892461	0.392059017601305	0.691744802286533
Merged-chr3-84773097-3	chr3	84772995	84773195	+	787.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42482.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	4.13610810876788	4.0714480146815	4.25776228329465	4.00342099873212	3.72513820935755	3.60858133184045	3.88875393194818	3.90269935229197	-0.925718089168027	0.0389492775614619	0.198257069406355
Merged-chr16-87585772-4	chr16	87585664	87585864	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144854, intron 4 of 4)	L1MB8|LINE|L1	32434.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	5.79517269297078	5.49982929911354	5.99489568247877	5.50784376468573	5.28486093800072	5.11758940623894	4.95177966336742	5.44673441744548	-0.856582137738322	0.00577982663847403	0.0528522970580605
Merged-chr17-33815589-3	chr17	33815476	33815676	+	984.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030697, intron 1 of 10)	B2_Mm1a|SINE|B2	5053.0	NM_030697	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	4.94109789511486	4.60369263597373	4.2409534278295	4.43138753081619	3.41849940291086	3.71656339482726	3.43551511711732	3.44498364608232	-3.33732644164382	4.1040843365181e-09	2.34638248183953e-07
Merged-chr3-100596499-3	chr3	100596391	100596591	+	838.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010763, intron 8 of 12)	intron (NM_010763, intron 8 of 12)	88982.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	3.43291073296944	3.47024957042243	3.93395203195908	3.80193350826942	3.18494290495242	3.54951009223777	3.5362956316256	3.80091781755487	-0.468797267076668	0.388706776054111	0.689075503405947
Merged-chr6-146776830-4	chr6	146776709	146776909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001346666, exon 12 of 12)	3' UTR (NM_001346666, exon 12 of 12)	-28721.0	NM_001289680	272322.0	Mm.333500	NM_172309	ENSMUSG00000040187	Arntl2	4632430A05Rik|BMAL2|CLIF|MOP9|bHLHe6	aryl hydrocarbon receptor nuclear translocator-like 2	protein-coding	6.43108097784708	6.72860748538699	6.97808003007967	6.87317676360487	6.6584498468352	6.73251356551515	7.03456222298227	6.31181679980403	-0.0906280289418845	0.709442051731228	0.883531787804477
Merged-chr17-35218859-7	chr17	35218741	35218941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13490.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	4.90331778889498	5.07675889365272	5.10331259625577	4.32368259942068	5.18498109515726	4.84688733358575	4.98306506638528	4.90082959418925	0.236955148699932	0.527373258366473	0.784361896301674
Merged-chr17-70994806-3	chr17	70994734	70994934	+	868.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026064, intron 3 of 3)	intron (NM_026064, intron 3 of 3)	3178.0	NM_001357820	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	3.91730648646519	3.40637938985959	3.99675084245541	3.47761468619675	3.27286790594861	3.60436083512407	3.08269660883301	3.23401503041604	-1.38787715895238	0.0178382640174331	0.118494466539416
Merged-chr19-44295406-2	chr19	44295306	44295506	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009128, intron 2 of 5)	intron (NM_009128, intron 2 of 5)	1730.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	2.38762316648057	2.19079148757517	2.52882202493546	2.21943425035536	2.59267004253509	2.63658995446501	2.70403855860437	2.77070919984237	1.95094905905594	0.00681140825721445	0.0597006807462465
Merged-chr8-74972526-3	chr8	74972443	74972643	+	623.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-21107.0	NM_001316753	70823.0	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	3.22678497818298	3.22383014679016	3.54798910323492	3.30668467567449	3.33996049972929	3.20999850030817	3.09022680911845	3.49775302043419	-0.126190307568527	0.817983536574044	0.930132058049583
Merged-chr1-153518758-4	chr1	153518637	153518837	+	927.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028749, intron 7 of 11)	B3|SINE|B2	30977.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	4.77789395518855	4.73810578198847	4.89070036565078	5.45136406312827	5.11614574929834	4.7011247321915	4.59165657455917	4.85120573490896	-0.357735441383643	0.353628266516749	0.660451095841925
Merged-chr14-25473704-3	chr14	25473648	25473848	+	969.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	14563.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	4.01121717561929	4.03489871949363	3.76564631348431	4.02930591425413	3.93698009653888	3.82764641096163	3.8540193104008	3.70862994593189	-0.372625948990575	0.400219215757166	0.698130218315876
Merged-chr10-94913564-4	chr10	94913485	94913685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 2 of 30)	intron (NM_018797, intron 2 of 30)	30993.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	6.09206276830926	6.13681183575229	6.15518247389626	6.46613637146516	6.07261778070446	5.87937340168826	6.23866958114261	6.46953993914893	-0.0831637030217474	0.744162418991778	0.89923574268619
Merged-chr13-75840266-2	chr13	75840178	75840378	+	1000.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_053108, intron 1 of 2)	intron (NM_053108, intron 1 of 2)	392.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	4.75628665575082	4.87856279236303	4.98165426886085	4.81271005926557	4.31700611676322	4.14686039271999	4.22771881039612	4.5234276357051	-1.22555379163417	0.000997331205860564	0.0134093384778899
Merged-chr2-58932379-4	chr2	58932280	58932480	+	918.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	177196.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	4.70960432058462	4.74958887752719	4.93835284159622	5.48086079824976	5.20933405471325	4.5145045111646	4.76843951243303	4.93501713668073	-0.268186376579329	0.501127576750118	0.769100353388826
Merged-chr2-30393068-4	chr2	30392971	30393171	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020329, intron 1 of 7)	intron (NM_020329, intron 1 of 7)	817.0	NM_001290508	57170.0	Mm.285167	NM_020329	ENSMUSG00000026856	Dolpp1	0610011H20Rik|AB030189|LSFR2	dolichyl pyrophosphate phosphatase 1	protein-coding	4.92501850732439	4.91755836278269	4.73343606942186	4.7998823825307	5.17585931211265	5.29474044424345	5.03646200372188	4.77116527166011	0.47580266559585	0.142070028138864	0.41942772844862
Merged-chr13-56658242-2	chr13	56658142	56658342	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44768.0	NM_008541	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	2.91665457002812	2.98611968202202	2.702146181413	2.75169482262544	2.80826359854108	3.3812002800315	3.03168856259614	3.31251300882462	1.26783987785629	0.0431164550627013	0.211275378969297
Merged-chr8-46617303-4	chr8	46617189	46617389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009810)	promoter-TSS (NM_009810)	-2.0	NM_001284409	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	7.67243519713289	7.78973427722791	7.55030664534598	7.75020622424313	7.78748889198971	7.59113476627615	8.00340139689915	7.7016166986797	0.109499924491417	0.537604887993814	0.79117876286038
Merged-chr12-21373641-4	chr12	21373565	21373765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277266)	promoter-TSS (NM_001277266)	-33.0	NM_009615	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	8.30806565070361	8.39146862459723	8.33720041473289	8.39732183080876	8.43229403769682	8.47586599458644	8.6862570150756	8.06987282873412	0.0943867917238214	0.591295720498809	0.821525680896513
Merged-chr8-104370607-4	chr8	104370543	104370743	+	981.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	L1MC4|LINE|L1	25164.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	5.09471726276551	4.77701624443461	5.46779805394261	5.50607886444278	5.08543036880703	5.01498856520826	5.03736555338959	5.24937516845052	-0.295405824824343	0.384863342168386	0.686295917231275
Merged-chr7-25790801-4	chr7	25790710	25790910	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2077.0	NM_001190975	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	4.64677459279711	5.10129515537615	5.11046139081181	5.17807118059866	4.95797215862318	4.54578846870967	4.89374946033208	4.5560036678593	-0.546422594054324	0.127073425468405	0.396517441208873
Merged-chr3-90080295-4	chr3	90080170	90080370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357581, intron 1 of 8)	CpG	749.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	6.28659783973297	6.70583483886653	6.54432084166762	5.70464517835464	6.20577691094933	6.65625103898534	6.32873955119454	6.30202107238771	0.0409480277141692	0.888530066741639	0.958180162421076
Merged-chr5-30921678-6	chr5	30921543	30921743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001349066)	promoter-TSS (NM_001349066)	84.0	NM_001310524	16548.0	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	6.21515264804702	6.73628465152748	6.61523012132187	6.33686054474538	6.78729179957481	6.77571152939249	6.68534726004034	6.67117154207992	0.354185589814778	0.11049385677629	0.367052888014166
Merged-chr4-45342601-3	chr4	45342509	45342709	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153167, exon 1 of 7)	exon (NM_153167, exon 1 of 7)	508.0	NM_153167	242418.0	Mm.317668	NM_153167	ENSMUSG00000035572	Dcaf10	AA959934|Wdr32	DDB1 and CUL4 associated factor 10	protein-coding	5.01761059533543	5.13621566701774	5.59844582104126	5.25626358162508	5.22257516221188	5.61564159453191	5.46864696539108	5.6424536268222	0.392056403480994	0.20113750730845	0.503376587144427
Merged-chr13-84222298-4	chr13	84222191	84222391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_138587)	promoter-TSS (NR_138587)	-5.0	NR_029418	72745.0	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding	7.93804239626286	8.38604283758594	8.38536849220766	8.47993316487236	8.19773560009274	8.38417751949089	8.41204586760525	8.12677214082056	-0.0457271964173056	0.802016666239381	0.923662205653877
Merged-chr15-50802320-3	chr15	50802185	50802385	+	879.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	86764.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	3.36760110938788	3.42755876579945	3.12560904333036	3.39847726215651	3.30374613079078	3.53639275268292	3.29926997564284	3.25082894005891	0.0322130477654844	0.951614761852949	0.982792981377963
Merged-chr8-109039974-3	chr8	109039884	109040084	+	704.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35238.0	NR_126329	628686.0	Mm.203332	NR_126329	ENSMUSG00000097393	D030068K23Rik	-	RIKEN cDNA D030068K23 gene	ncRNA	3.73687693488885	3.502182026483	3.68768622983993	4.14013957361707	3.58840518556791	3.31402426248303	3.56815250697893	3.52388057400716	-0.933979722470955	0.0776802986996229	0.301401252719567
Merged-chr15-76722777-4	chr15	76722672	76722872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198119)	promoter-TSS (NM_198119)	-599.0	NM_198119	378937.0	Mm.289666	NM_198119	ENSMUSG00000033707	Lrrc24	6430402H13Rik	leucine rich repeat containing 24	protein-coding	6.5505600014585	6.60415276477565	5.80260362371768	6.1081952322977	6.25318550696295	6.54702805218268	6.53324299873752	6.15636970710582	0.11452516561737	0.674699500147054	0.866288502642047
Merged-chr2-132598705-2	chr2	132598605	132598805	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 1 of 3)	(TTCCC)n|Simple_repeat|Simple_repeat	509.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	2.82903020230127	3.23800721717324	3.27076620525707	2.99712273983901	3.19230171080503	3.20990892952795	3.14718343752569	3.21434784392173	0.385656636453317	0.501682124118791	0.769345348333684
Merged-chr15-97517988-4	chr15	97517880	97518080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187842.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	6.26508234822336	6.46047082464916	7.15595845377845	6.79410427723648	6.23986743598949	5.81290652369462	6.27179562610853	5.68598712923003	-1.01153841433405	0.000554281843539293	0.00838179777907109
Merged-chr6-82996938-4	chr6	82996872	82997072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	intron (NM_033079, intron 4 of 9)	36499.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	7.48474669186821	7.84910102058983	7.86747623695393	7.51168763687783	7.93765426577761	8.0950097060734	7.81479099225763	8.00028167778199	0.363284241558766	0.0471982817027161	0.223640426928347
Merged-chr9-96537661-2	chr9	96537561	96537761	+	837.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58986.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	2.77847313350312	2.62264149984669	2.66041849180026	2.32957862687281	2.68758011184051	2.56362202467761	2.52217414993445	2.52891520064218	-0.106647720808987	0.879604281425464	0.95492035609827
Merged-chr14-65345662-4	chr14	65345581	65345781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12995.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	7.56624764211608	7.49109338333261	7.58509037802087	7.49793540161828	7.63314181531534	7.57466335107375	7.37071838687727	7.65594051489626	0.043851431237345	0.798947458084088	0.922381350542369
Merged-chr10-93477036-4	chr10	93476936	93477136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008517, intron 14 of 18)	intron (NM_008517, intron 14 of 18)	-11732.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	6.98631530775534	7.04556509698215	7.47277851503739	7.41944171101102	6.27655922131729	5.79920817341179	6.30112094076484	5.99088332696962	-1.630189315666	3.32758026984391e-11	2.75411437240953e-09
Merged-chr5-5419434-4	chr5	5419353	5419553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39202.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	7.43305563407536	7.34817040051512	7.5281297274287	7.77293397127522	7.63973715689103	7.40016686160268	7.26528957664124	7.59317770686066	-0.0705497547543386	0.720367573907135	0.888262296532504
Merged-chr10-34279409-4	chr10	34279290	34279490	+	798.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2800.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	3.56607671955276	3.5327896863515	3.38897649990177	3.50103012834822	3.73272651636367	3.84173391641113	3.60621777103	3.72058425061174	0.713987337075978	0.128868732614408	0.399380073270456
Merged-chr10-62602206-5	chr10	62602087	62602287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019553, exon 1 of 15)	exon (NM_019553, exon 1 of 15)	111.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	6.66248005156686	6.95524551916871	7.03587785137469	6.63531386286217	6.85415053985011	7.39952592768484	6.98839240133173	6.75159798107363	0.265087621224841	0.253675202698415	0.564967060477799
Merged-chr13-23717732-4	chr13	23717622	23717822	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_1B-I_MM-int|LTR|ERVK	-6868.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	4.2776408327762	3.91831754598767	4.65603730745976	4.33839452750455	4.48390105023015	4.50296363322217	4.86291911948783	4.68866430244565	0.722255818658868	0.073729386648502	0.292443073162251
Merged-chr3-34034995-3	chr3	34034901	34035101	+	868.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113189, intron 1 of 16)	intron (NM_001113189, intron 1 of 16)	14922.0	NM_001113189	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	3.51608844702121	3.47674617125251	3.56827719190881	3.46409967567023	3.559729746921	3.1920525953758	3.55352994387523	3.40467206000803	-0.206045555185503	0.68733134878877	0.87220206224481
Merged-chr12-3852700-3	chr12	3852668	3852868	+	924.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 3 of 22)	intron (NM_007872, intron 3 of 22)	9476.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	3.31016232632385	3.38404132228572	3.47231325062148	3.22077774859998	3.47021745069847	3.23514602730627	3.24043239257878	3.36508428568944	-0.0166749601410097	0.974785352021429	0.990966385645806
Merged-chr14-70119581-3	chr14	70119467	70119667	+	918.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360404, intron 2 of 7)	intron (NM_001360404, intron 2 of 7)	19474.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	3.96203969797464	4.36574063192155	3.85340665282953	4.37575170154112	3.91113822041613	4.0312044943555	4.22472035735002	4.19858020463882	-0.20980525193582	0.636946656013823	0.846506358316041
Merged-chr7-143625275-4	chr7	143625170	143625370	+	912.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175649, intron 1 of 7)	RMER4A|LTR|ERVK	2575.0	NM_175649	244237.0	Mm.247498	NM_175649	ENSMUSG00000045362	Tnfrsf26	Tnfrh3|Tnfrsf24	tumor necrosis factor receptor superfamily, member 26	protein-coding	4.39439439219871	4.41136775724752	4.12033345052429	4.05334266358311	4.36762754084877	4.82201066581642	3.82416593855176	4.30708607901737	0.299491136956503	0.507721651186661	0.773013347050223
Merged-chr11-75659450-4	chr11	75659307	75659507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080774, intron 5 of 31)	L2a|LINE|L2	3392.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	5.15412026129558	4.92165937421261	5.15499346223605	5.29210054455653	5.15826223833827	4.88173066277604	5.19149644591101	5.38368908264268	0.0386016726850119	0.902422084661639	0.963787729579172
Merged-chr2-112284533-4	chr2	112284407	112284607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133648)	promoter-TSS (NM_133648)	-181.0	NM_133648	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	5.01466450863205	5.1660067677945	5.27764294368169	5.30265584543338	5.13895467089598	5.15526648481966	5.33663216082865	5.24406108965537	0.0244720568781476	0.934099121646472	0.976275128915691
Merged-chr6-8274587-4	chr6	8274477	8274677	+	850.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302354, intron 2 of 3)	ORR1D2|LTR|ERVL-MaLR	15289.0	NM_001302353	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	3.92269302456238	3.81270041133132	4.10494176812069	3.71086710905057	3.94118261934861	3.99479054145607	3.85745074810745	3.87124608875929	0.0996209523293787	0.821628241832587	0.931801804015132
Merged-chr2-142698524-8	chr2	142698418	142698618	+	907.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 23 of 26)	intron (NM_001355123, intron 23 of 26)	202946.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	3.75536540378468	3.51813450905547	3.70375605280485	3.48838796689102	3.83403686152479	3.71056625116372	3.88331152373354	3.94299627110828	0.714095442952278	0.118842039700334	0.3813389862111
Merged-chr4-148444744-4	chr4	148444714	148444914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027873)	promoter-TSS (NM_027873)	-63.0	NM_027873	71707.0	Mm.292503	NM_027873	ENSMUSG00000047719	Ubiad1	1200002M06Rik|AI426463|AW320947|Tere1	UbiA prenyltransferase domain containing 1	protein-coding	5.43262472528075	5.31123676924185	5.20543670687137	4.72928821277243	5.91491810506995	5.94693199728948	6.0446248367064	5.76868170221792	1.29051597723762	1.58645841234246e-05	0.000416380985737919
Merged-chr6-120112636-4	chr6	120112532	120112732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	19252.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	8.21377614819301	8.10265241229617	8.30365988593157	8.28157328906478	7.82763714236931	7.94180578635359	7.85125580222242	7.78323577531152	-0.487173241787959	0.00202456167330495	0.023604631506007
Merged-chr12-105785129-4	chr12	105785058	105785258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011112, intron 1 of 21)	CpG	461.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	6.57841726872743	6.25301863147692	6.21506628635809	6.12544493922106	6.333195814148	6.67692982729235	6.59008213373576	6.0838034363447	0.212618717147405	0.393074351869265	0.692266411611797
Merged-chr6-57773995-4	chr6	57773914	57774114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	51111.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	7.37699810133754	6.99992539185849	7.16864416405168	7.23774324586451	7.24453584159259	7.03781205227133	7.19911174881822	7.43889601027907	0.05069019912259	0.79526967809196	0.920823289538254
Merged-chr3-126624131-8	chr3	126623874	126624074	+	835.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	27023.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	2.93603119473542	2.88149535106661	3.1080063541432	2.44639652596508	2.57856344878675	3.16809800694172	2.79844277818287	2.87236861134931	0.0231192960348301	0.973816897173235	0.990599589807354
Merged-chr8-88274891-4	chr8	88274790	88274990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007406, intron 1 of 27)	intron (NM_007406, intron 1 of 27)	2487.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	5.95662616599745	5.82729801578051	6.0201086822467	5.96676467907764	5.66518485763584	5.5848191793091	5.66913657181354	5.9953530751559	-0.33735826154004	0.185563977184445	0.483535595695257
Merged-chr13-54206446-3	chr13	54206328	54206528	+	965.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153432, intron 1 of 3)	intron (NR_153432, intron 1 of 3)	14295.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	3.95625846622762	4.83451827530392	4.11226732581515	4.45994617710068	4.31414563204586	3.77134524800804	4.14207204560982	3.9545998343669	-0.793931175336365	0.101161963085895	0.349148360927065
Merged-chr10-76513384-3	chr10	76513284	76513484	+	857.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019434, intron 28 of 28)	MTD-int|LTR|ERVL-MaLR	-18221.0	NM_146006	16987.0	Mm.55075	NM_146006	ENSMUSG00000033105	Lss	2810025N20Rik|D10Ertd116e|Osc	lanosterol synthase	protein-coding	3.6711063501748	3.95163347274398	3.61458819811098	3.3707107839485	3.94914327396943	3.54443029148111	4.07619812944656	3.92195048644262	0.670338169026429	0.17720755933079	0.472449504292692
Merged-chr1-91874852-2	chr1	91874752	91874952	+	993.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73391.0	NM_007855	13345.0	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	3.15349581021949	3.16327162157881	2.9435519122936	3.19541099415008	3.362421615995	3.26713812665065	3.42988899334699	3.84007493913806	1.30492767724254	0.0214484824407782	0.134085319242654
Merged-chr2-155533637-2	chr2	155533545	155533745	+	911.25	f0_balb.idr|f1_balb.idr	intron (NM_019811, intron 2 of 17)	Charlie2a|DNA|hAT-Charlie	15602.0	NM_019811	60525.0	Mm.255026	NM_019811	ENSMUSG00000027605	Acss2	1110017C11Rik|ACAS|Acas1|Acas2|AceCS1|Acs1	acyl-CoA synthetase short-chain family member 2	protein-coding	4.16702740767221	4.62884212422049	4.27929525544311	3.81203032001916	2.9315374479905	3.21865186859416	3.08583233547867	3.09351265762849	-5.69229503522063	2.64625673433611e-08	1.29012265817336e-06
Merged-chr4-115848211-4	chr4	115848080	115848280	+	969.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285487, intron 2 of 14)	intron (NM_001285487, intron 2 of 14)	8982.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	4.07344551919668	4.0034365618778	4.12393402342528	4.03836212283145	4.59767161302583	3.91514466430389	4.24378903093054	4.70039297163769	0.853120473574339	0.0460246197422451	0.220245408199128
Merged-chr11-32542287-3	chr11	32542198	32542398	+	870.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	9032.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	4.23288910374629	4.01341137061764	4.01677608794133	3.72748872749857	3.76646770689535	4.09205380658608	3.85080029156311	4.06068406706162	-0.146204557078135	0.747013792234106	0.900360585163767
Merged-chr10-127642510-3	chr10	127642414	127642614	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009284)	promoter-TSS (NM_009284)	-472.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	4.36842449108702	4.61218344550478	4.51115880741838	4.48363123474116	4.75957603485231	5.16195629675939	4.87268428359564	4.89337620218058	0.892446347832302	0.00951255707533306	0.0761378949808987
Merged-chr4-141663725-3	chr4	141663606	141663806	+	991.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	CpG	409.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	3.93382111137355	4.10827303501323	4.24461599111668	3.66465336662583	4.39160424698512	4.46448587322055	4.43534754762737	4.79363488756899	1.32882462786952	0.00156339059453191	0.019326255492912
Merged-chr5-125339237-4	chr5	125339146	125339346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	1848.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	6.55082767077828	6.44255415719567	6.3182517442812	6.55940513406049	6.21851295314817	6.16245621771924	6.22991750491063	6.0938830685287	-0.44772803783248	0.0420412379400196	0.207737124285502
Merged-chr11-4297099-3	chr11	4296967	4297167	+	816.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30271.0	NM_001039537	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	3.48464642465564	3.73449668704507	3.82492455356978	3.71365192506791	3.34698416231311	3.48320560681048	3.2954195965762	3.09963988407648	-1.3240616048667	0.0140194687362152	0.100099484920761
Merged-chr17-35045317-4	chr17	35045212	35045412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001146215, exon 4 of 25)	exon (NM_001146215, exon 4 of 25)	1310.0	NM_013600	17687.0	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	4.99823439755085	5.14721248053073	5.06525675067723	4.86568122073654	4.726174303341	5.06797681592804	4.49017165615537	5.34828323253175	-0.144441333531466	0.690558781705813	0.874020189003077
Merged-chr13-112001312-3	chr13	112001181	112001381	+	845.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	133345.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	3.96914087592823	3.56102733464427	3.60413429030574	3.80663915963003	3.5303197413075	3.20411255431145	3.53619466455059	3.49160427493096	-0.95533308779523	0.0669383430900608	0.275984958457335
Merged-chr10-19958373-4	chr10	19958278	19958478	+	978.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	23852.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	5.36376099993724	5.3076770879871	4.95051470502622	4.66652218206316	4.62099045493126	4.35593835124314	4.50693900880614	4.16324459762239	-1.40166608098439	0.000555793801737576	0.00839754765737188
Merged-chr9-65908947-4	chr9	65908873	65909073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019797)	promoter-TSS (NM_019797)	-37.0	NM_173185	214897.0	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	7.3632904361661	7.46929116282716	7.2401432618706	7.0897068048757	7.29152690691631	7.42789117297842	7.10216087625051	7.17938712283251	-0.0467963904439166	0.810067384368033	0.926776956547369
Merged-chr7-125546526-3	chr7	125546431	125546631	+	906.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	-5751.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	3.37914272077744	3.15025023984109	3.10451894924265	3.20430345746848	3.98189535735578	3.78090224684055	3.78516537621539	3.75460112007785	2.03214569286791	6.18415087252131e-05	0.00135440515370829
Merged-chr10-80018881-4	chr10	80018777	80018977	+	831.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027521)	promoter-TSS (NM_027521)	-798.0	NM_027521	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	3.9313971160797	4.06131928658822	3.82688357477051	4.33639533053481	4.2126222978322	3.77025126379405	3.57628093718616	4.20093985515881	-0.235005771758371	0.635068441578196	0.845578277746738
Merged-chr17-84273065-4	chr17	84272971	84273171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 29 of 37)	intron (NM_183021, intron 29 of 37)	-85124.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	7.3886519961695	7.16829567107765	7.26346302359806	7.15778188024897	6.80092691351636	7.16683126627952	6.77759027925575	6.66797283566021	-0.525069833691495	0.0101223807668034	0.0796193296411474
Merged-chr1-193060331-4	chr1	193060253	193060453	+	761.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24578.0	NM_181546	329324.0	Mm.76710	NM_181546	ENSMUSG00000016200	Syt14	B230320I09Rik|sytXIV	synaptotagmin XIV	protein-coding	3.65128409126183	3.93467973714836	3.82277245177032	4.33828938521512	3.33408526537756	3.88972623720042	4.00291294455248	4.26717389521934	-0.14311244362959	0.794239617560645	0.920431871081515
Merged-chr9-61374571-4	chr9	61374392	61374592	+	756.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083928, intron 2 of 19)	intron (NM_001083928, intron 2 of 19)	2126.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	3.5301253562299	3.34753978280546	3.36558926820931	3.18816051398157	3.28898386752434	3.64799937629655	3.35291833570944	3.57908653678415	0.403900390849545	0.439627058554427	0.727425871224001
Merged-chr14-55161489-4	chr14	55161377	55161577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44542.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	5.35521288238471	5.99489413002333	5.56106710838191	5.22688186824727	5.91357944043312	5.46981574107625	5.75404690980619	5.32032153738578	0.137641769276279	0.671762125892407	0.864905117611895
Merged-chr1-34028943-4	chr1	34028848	34029048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134448, intron 1 of 97)	L1MEc|LINE|L1	17123.0	NM_134448	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	7.00355301118635	7.19046146046641	6.69487928653736	7.03233587829065	6.98152001336202	7.19372519268452	7.09920832989446	6.90930429526848	0.0675841852567841	0.740639830348429	0.897985196074791
Merged-chr17-79661592-4	chr17	79661547	79661747	+	815.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201361, intron 5 of 10)	intron (NM_201361, intron 5 of 10)	46747.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	4.11302306765043	3.86107485014551	4.06566631461009	4.1836827410318	3.93958279631059	4.1402058849519	4.58952136542635	4.06323797603237	0.346967310155039	0.430540038490093	0.721119359006196
Merged-chr2-160872673-3	chr2	160872591	160872791	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177263, intron 1 of 3)	CpG	299.0	NM_177263	320799.0	Mm.436734	NM_177263	ENSMUSG00000035877	Zhx3	1810059C13Rik|4932418O04Rik|9530010N21Rik|Tix1|mKIAA0395	zinc fingers and homeoboxes 3	protein-coding	5.38207866439848	4.99997496018577	5.26951819622433	5.0862141601055	5.06647633007373	5.07069912128648	5.32872214933609	5.29517207050487	0.0194398159382644	0.949285067542317	0.981795963828349
Merged-chr16-13819256-4	chr16	13819173	13819373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010946)	promoter-TSS (NM_010946)	22.0	NM_001346111	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	8.64541064280759	8.56338144471797	8.41841901080887	8.63168385877804	8.61562727276949	8.78378728020746	8.86646837606969	8.5679705776983	0.178532839906118	0.253056512369627	0.564330769282464
Merged-chr3-108257036-4	chr3	108256918	108257118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011967)	promoter-TSS (NM_011967)	92.0	NM_011967	26442.0	Mm.208883	NM_011967	ENSMUSG00000068749	Psma5	ZETA	proteasome (prosome, macropain) subunit, alpha type 5	protein-coding	8.05890469000757	8.51611908596479	8.25972959234099	8.0989396388949	8.33026319325499	8.54250791625366	8.44640355628774	8.06831147556656	0.143415828367125	0.441472041052211	0.72851318019698
Merged-chr15-63270563-3	chr15	63270465	63270665	+	977.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	209043.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	4.20150118864522	3.55641887750073	4.03749892267456	4.24503047918121	3.70353811325435	3.61710915335301	3.92906104615967	3.62422065741954	-0.907441089943615	0.0680344812977675	0.278439241203322
Merged-chr15-75021538-3	chr15	75021438	75021638	+	987.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23507.0	NM_010738	110454.0	Mm.425949	NM_010738	ENSMUSG00000075602	Ly6a	Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP	lymphocyte antigen 6 complex, locus A	protein-coding	3.49907710845178	3.36976243755689	3.26108538174812	2.49310904573854	4.73257382542529	4.86316487417835	4.30439774137772	4.94036777033339	4.6572278541248	0.000223612965328338	0.00399010961622105
Merged-chr13-100402041-3	chr13	100401936	100402136	+	797.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	50828.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	3.71405794057541	4.51583747568119	3.71457929217256	3.35491278771416	4.04151659960705	4.27813864628658	3.69949046124292	3.31903881910179	-0.0704226337153519	0.908842289091839	0.966100563913989
Merged-chr8-88298164-4	chr8	88298071	88298271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037724, intron 3 of 27)	intron (NM_001037724, intron 3 of 27)	3967.0	NM_001037724	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	5.95098381131272	6.14541289359289	6.38649604114991	6.47569856910084	5.952604430357	6.03239764427697	6.24992543185834	6.16380352682769	-0.259808063914177	0.298071470473665	0.61026374034531
Merged-chr9-7837922-1	chr9	7837822	7838022	+	1000.0	f0_c57.idr	promoter-TSS (NM_007465)	promoter-TSS (NM_007465)	-865.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	4.42679944989593	5.02292820405881	4.89868751915948	4.56384151103732	5.08137391843605	5.10759264809014	5.24307148099622	4.895385538376	0.685252161024596	0.0472984363552239	0.223891427899746
Merged-chr5-105662066-4	chr5	105661938	105662138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37931.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	7.25254302788794	7.30785770173431	7.43084560854815	7.51554335599096	6.91936222850368	6.80128740171373	7.29901665973823	6.78043762564499	-0.570376724664708	0.00575305280773161	0.0526954762323418
Merged-chr14-57999247-4	chr14	57999084	57999284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028643)	promoter-TSS (NM_028643)	78.0	NM_028643	68514.0	Mm.26834	NM_028643	ENSMUSG00000021973	Micu2	1110008L20Rik|4833427E09Rik|AU041871|Efha1|Smhs2	mitochondrial calcium uptake 2	protein-coding	5.54150425917409	5.56894053446339	5.43205256096596	5.42898488154297	5.33975273541841	5.71564228740566	5.54051240009787	5.20873837518888	-0.0566286151582677	0.841654475375463	0.939882709487764
Merged-chr2-169934565-4	chr2	169934473	169934673	+	940.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28614.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	4.79351194461843	5.07473944113849	4.93375357742452	4.8497668577237	4.5780072739193	4.49155514101258	4.90968174180845	4.59242172960218	-0.550912366030433	0.111382941544071	0.368698618619051
Merged-chr12-102425523-4	chr12	102425399	102425599	+	812.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	B3A|SINE|B2	14314.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	3.65014627953561	3.92807961316287	3.81818825572632	4.10745222962009	4.00692020672901	3.76820757312086	3.75009873497876	4.13801877877906	0.07760490972086	0.867976768932885	0.950535454684971
Merged-chr11-113777362-3	chr11	113777273	113777473	+	726.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25558.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	3.46490909418659	3.86065166336072	3.58080444683996	3.51302867941763	3.58730043413742	3.64039877847294	3.62032970362718	3.78245573197957	0.144001294153884	0.765573326440293	0.908309649125696
Merged-chr14-63129170-4	chr14	63129076	63129276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	6714.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	8.54163380276686	8.28925997242072	8.229145311621	8.24862452406176	8.33516992778945	8.59440291589142	8.19632929248433	8.26467368161518	0.0312985345130624	0.854777559436214	0.945298752280211
Merged-chr10-112160354-4	chr10	112160264	112160464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3257.0	NM_001310675	353025.0	Mm.194428	NM_178278	ENSMUSG00000035694	Caps2	D630005B03Rik	calcyphosphine 2	protein-coding	6.85584049527416	6.48114328075116	6.60397201051919	6.81456814814979	6.96383628661419	6.74829983157861	7.22095976966713	6.87884127305606	0.370765082926612	0.087039223067551	0.321728259728112
Merged-chr2-71453267-4	chr2	71453167	71453367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025633)	promoter-TSS (NM_025633)	-71.0	NM_025633	66559.0	Mm.152796	NM_025633	ENSMUSG00000041921	Metap1d	2310066F24Rik|3110033D18Rik|AV117938|MAP 1D|Map1d|MetAP 1D|Metapl1	methionyl aminopeptidase type 1D (mitochondrial)	protein-coding	6.98094746616539	6.94322104419666	6.63729566644151	7.07492528528172	6.72736444949606	6.51278782523693	6.78006222281495	6.51630484013712	-0.402779175908282	0.0595964420189518	0.257356982737789
Merged-chr15-36499592-2	chr15	36499492	36499692	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2801.0	NM_175134	68839.0	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	3.38691426607337	3.16322538124883	3.7704016809266	3.55358565986757	3.25714428138621	3.4443155037804	3.13242879070201	3.20638464408356	-0.795492626309267	0.157702842358331	0.444363018325581
Merged-chr1-180972358-4	chr1	180972262	180972462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 20 of 22)	intron (NM_144794, intron 20 of 22)	29844.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	5.87908821081689	6.47619027520456	6.22248438630096	5.91764809051845	6.01601758297778	6.30046300604883	6.24524539956687	5.80012767196202	-0.0619093336869804	0.819219693215379	0.930746026231085
Merged-chr10-20311586-4	chr10	20311478	20311678	+	861.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153787)	promoter-TSS (NM_153787)	-891.0	NM_001025392	72567.0	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	4.11134572450486	3.98992729549643	4.15772420749436	4.13658157265177	4.06903800018597	4.18809232662115	3.99882560976596	4.28266886475206	0.0878577361849286	0.82849361682105	0.934169961374777
Merged-chr13-101664166-4	chr13	101664055	101664255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28475.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	7.10492921338734	7.11022796157383	6.77118227913501	7.13545043134998	7.30655205870789	6.87063383630534	7.45115184810006	7.15860653953127	0.238159439135782	0.260577023685901	0.572386494535821
Merged-chr5-25221852-3	chr5	25221754	25221954	+	848.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1018.0	NM_144908	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	3.10569609754776	2.76653567401446	2.91301548937541	2.90217617886564	2.90639520596045	3.21956872199123	3.26023291952658	3.466614123204	1.19208943918923	0.0477162839484183	0.225337990437648
Merged-chr10-63424644-4	chr10	63424538	63424738	+	986.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-5460.0	NM_177612	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	5.44897024975033	5.26998979609872	5.03747063691989	5.21447744621535	5.32480217523205	5.17871599178764	5.57419258131376	5.57454885543881	0.312474063279979	0.291227113958117	0.603554575525704
Merged-chr10-19508179-3	chr10	19508072	19508272	+	942.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152784)	TTS (NR_152784)	13529.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	3.41140377866736	2.9544008165739	3.66381405716652	3.73761274245654	3.31224347107681	3.40868619584333	3.39855668136626	3.29370911178222	-0.441386523857587	0.456728382592996	0.740045745284138
Merged-chr5-67295824-3	chr5	67295687	67295887	+	857.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-11168.0	NM_178651	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	3.55468105030058	3.10885059117916	3.27368941745631	3.25950078971951	4.34719370180413	4.07155239393782	4.49103662665662	4.11969536183035	2.87018559515061	2.10008093834556e-08	1.04899411305613e-06
Merged-chr5-148548720-3	chr5	148548591	148548791	+	856.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	2982.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	3.53931070423634	3.49804034212557	3.42638009824045	2.93136469418644	3.75675472953663	3.71242508138428	3.47048486634698	3.64194657454609	0.961732929797235	0.0807872964864762	0.30834677337181
Merged-chr1-152511457-4	chr1	152511347	152511547	+	960.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177756)	TTS (NM_177756)	111580.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	5.17298218799038	5.82721774789569	5.40924496512941	4.98683678694358	4.85883105341145	5.44151009599461	4.64577049290929	5.10402805399727	-0.635752031885242	0.0911870039544869	0.329991344474881
Merged-chr11-77318921-3	chr11	77318818	77319018	+	748.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 1 of 14)	RMER6A|LTR|ERVK	-29362.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	3.42022739427693	3.38323651913735	3.18453105602302	3.0583970496021	3.16763034850065	3.48095336677869	3.45890469480725	3.52227214528345	0.532042930600558	0.326844575360223	0.638432218154922
Merged-chr6-5379296-4	chr6	5379207	5379407	+	857.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4079.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	3.87058358153488	3.77342811584094	3.87112161545325	3.92257988022592	4.29909915160306	4.09465673289231	3.95543064003375	4.01753603196578	0.650675923001862	0.126653281713342	0.395674769095591
Merged-chr11-69778149-4	chr11	69778061	69778261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029348, exon 4 of 4)	exon (NM_029348, exon 4 of 4)	12249.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	5.63085301877787	6.07990306123243	6.0832808882425	5.71826269059184	5.99123330858938	6.0416206717978	6.27014472437074	5.73702572496176	0.216517096288805	0.420363655297865	0.713272416993177
Merged-chr17-80131622-3	chr17	80131510	80131710	+	913.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 1 of 6)	intron (NM_176963, intron 1 of 6)	4139.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	3.47699896071427	3.04942976423923	3.25871403289549	3.60051290224491	3.39541922198741	3.307188806092	3.30492806898269	3.37111567445593	-0.102090804356762	0.855114240035787	0.945435258259794
Merged-chr14-20803708-4	chr14	20803550	20803750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9411.0	NR_153779	102631887.0	Mm.122292	NR_153779	ENSMUSG00000114241	Gm30108	-	predicted gene, 30108	ncRNA	5.11397804362403	5.3673238261973	4.74813835434993	5.24274127139433	5.3157377724914	5.68291845244214	5.42903098112333	5.82648135467708	0.749497040848767	0.0190967606544364	0.124045293540986
Merged-chr6-116439711-3	chr6	116439617	116439817	+	896.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009662, intron 3 of 13)	intron (NM_009662, intron 3 of 13)	21461.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	4.16746885122803	3.95505368474951	4.28855821235319	4.08065173956487	4.13579509267735	3.71127868952124	3.76216349835452	3.88381460929873	-0.615750944697135	0.173535693458331	0.467581910161457
Merged-chr11-68408325-4	chr11	68408226	68408426	+	801.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21500.0	NM_008744	18208.0	Mm.39095	NM_008744	ENSMUSG00000020902	Ntn1	AI561871|BC019633|Netrin-1	netrin 1	protein-coding	3.89958169847112	3.69636080745756	3.94558026744175	3.15221586710423	3.97143470180476	3.70745097358666	3.78780916225813	3.64349534817011	0.246030034611111	0.647120738769361	0.851605116430591
Merged-chr19-47405730-4	chr19	47405638	47405838	+	762.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 2 of 14)	G-rich|Low_complexity|Low_complexity	58673.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	4.27783154559853	4.20731956826554	4.61254693215887	4.33147279022565	3.96589339777149	4.00744411442022	3.62067038483343	4.31752955748404	-0.930394240280632	0.0398309858008317	0.201215737282995
Merged-chr10-14959288-4	chr10	14959196	14959396	+	984.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	199007.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	6.12413145578922	5.98325201645572	6.16268149479604	6.80526125676502	5.45722882419261	5.20968591635656	5.58889679231209	5.43159497402132	-1.45400144657859	1.93860982520259e-06	6.37359393755637e-05
Merged-chr13-101119757-3	chr13	101119638	101119838	+	705.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112389.0	NR_046158	328324.0	Mm.402274	NR_046158	ENSMUSG00000114590	5930438M14Rik	5930438M14	RIKEN cDNA 5930438M14 gene	ncRNA	3.43892711510571	3.4441767208138	3.38558522843838	3.61720583229067	3.28968249029179	3.3196853062053	3.13502258959934	3.26905242687646	-0.821770291826616	0.122269693931	0.387438656649363
Merged-chr7-141409074-4	chr7	141408953	141409153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172116, intron 7 of 7)	intron (NM_172116, intron 7 of 7)	5072.0	NM_172116	213350.0	Mm.290953	NM_172116	ENSMUSG00000051007	Gatd1	BC023835|D230016J19Rik|Pddc1	glutamine amidotransferase like class 1 domain containing 1	protein-coding	5.41925370928805	5.54577287158167	5.19478614787902	5.63391172845755	5.42601941486185	5.73366796447115	5.87418533343296	5.25969183123418	0.203667781495568	0.500855558870993	0.769017904448726
Merged-chr11-85123629-7	chr11	85123545	85123745	+	884.4761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029934, intron 1 of 33)	B1_Mur1|SINE|Alu	16310.0	NM_001029934	237898.0	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	3.24078391877753	3.19497832023174	3.67458834963881	3.16560463238285	3.64794002973126	3.47876414260621	3.35117417596618	3.52657364793351	0.626590290976237	0.242370983421259	0.553081694951968
Merged-chr13-10540366-4	chr13	10540260	10540460	+	655.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-179557.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	3.79353030087764	4.03235385103026	3.51041458179695	3.5877384278289	3.74040893936724	3.80682945550391	3.82772934341152	3.98084707157933	0.283234454179345	0.549247321422216	0.797926160923547
Merged-chr3-61321868-4	chr3	61321787	61321987	+	976.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42620.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	5.34479089203204	5.42035314727648	5.25769041700813	5.60573394108855	5.22388086263955	5.12801234447312	5.03652108694653	4.78259619368814	-0.675011369946186	0.0299940398651216	0.167236860689291
Merged-chr19-41445871-4	chr19	41445748	41445948	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60778.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	5.36683783811807	5.63735878114113	5.1472106470117	5.31507865868262	5.31230050539931	5.38957625203856	5.45085121599892	5.03636600552155	-0.130058089479563	0.666174606114815	0.861911413823008
Merged-chr12-52605481-4	chr12	52605353	52605553	+	738.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3131.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	3.47876510425524	3.57576817035876	3.42298679410527	3.37058770523659	3.52181283320883	3.3498002402232	3.66573402518327	3.53117441171216	0.215887514567829	0.663533616403993	0.860583066671887
Merged-chr5-35575073-4	chr5	35574953	35575153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030208)	promoter-TSS (NM_030208)	17.0	NM_030208	78890.0	Mm.98522	NM_030208	ENSMUSG00000029097	Trmt44	2310079F23Rik|Mettl19	tRNA methyltransferase 44	protein-coding	6.66557809000287	6.23713837561606	6.24123251959864	6.54941930324244	6.81513256845206	6.49558947885027	6.44692567005159	6.44135002385181	0.187931475843919	0.425693579194787	0.717130352428651
Merged-chr5-142926539-4	chr5	142926440	142926640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19786.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	5.50706182765518	5.1462676216569	5.27072925267784	5.29184920526199	5.57094828487826	5.51018600818339	5.80889933723092	5.53088392954661	0.53073833332286	0.0566919105545723	0.249383443629189
Merged-chr18-82469532-3	chr18	82469427	82469627	+	697.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5596.0	NM_001025245	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	4.12907156847839	3.80074560635714	3.45038781232697	3.46439400206858	3.79169290692215	3.62995151476077	3.77022816567496	3.57026580367153	-0.111491768195935	0.828370621567677	0.934164461367054
Merged-chr13-13954475-4	chr13	13954371	13954571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362404)	promoter-TSS (NM_001362404)	-203.0	NM_001362404	97884.0	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	9.35383600163703	9.44543854359106	9.5821666735449	9.751184533328	9.53550411353605	9.61358283483209	9.65744602252908	9.46951253389504	0.0298351634434268	0.844018282590649	0.94088019607581
Merged-chr1-191391512-4	chr1	191391434	191391634	+	864.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144880, intron 1 of 12)	intron (NM_144880, intron 1 of 12)	5507.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	3.64848878934821	3.76398398264957	3.64892868419194	3.99794834713818	4.16580570575911	4.08279040045371	3.84976421360447	3.95983420429451	0.651967772954322	0.158270115496417	0.445136263273253
Merged-chr13-44469852-4	chr13	44469663	44469863	+	885.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30036.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	3.69607020409216	3.88392237768457	3.64289629691579	3.69450484635778	3.9809131415933	3.64391586953094	3.68184344080147	3.52665256260679	-0.00201704262726988	0.996644338090773	0.998649443287934
Merged-chr6-127147873-4	chr6	127147753	127147953	+	973.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009829, intron 2 of 4)	intron (NM_009829, intron 2 of 4)	-1536.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	4.68724298605531	4.86407235040878	4.7665953212122	4.41024015873449	4.85483343641361	5.14753342979048	4.95242926228961	4.6849476404047	0.49461374176879	0.158797690542822	0.445968073195799
Merged-chr19-32595801-4	chr19	32595690	32595890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201470)	promoter-TSS (NM_001201470)	75.0	NM_001201470	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	5.50687756345965	5.49038312872641	5.80722791142535	5.87168410174198	5.46594217561234	5.71052616077133	5.16493638267088	5.61177454338084	-0.32446222732811	0.265131247837191	0.576956662317123
Merged-chr2-14233136-4	chr2	14233023	14233223	+	954.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 1 of 29)	L2c|LINE|L2	3709.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	4.94662611795172	5.19804260685901	5.28618281184991	5.590716417308	5.71939926851677	5.04777897788406	4.76088070592661	5.22161766784763	-0.0659406907420856	0.859146917954676	0.946629595100632
Merged-chr5-30009542-2	chr5	30009442	30009642	+	890.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3572.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	2.88334133432502	2.80197983723499	2.81407823917567	2.94983605362687	3.50375074094039	3.12288336829386	3.00203522218287	3.128601329601	1.37724843590732	0.0234665729503425	0.14222222349645
Merged-chr19-53313326-4	chr19	53313179	53313379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	CpG	1834.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	6.16155812474749	6.43775603885665	6.33953856262701	6.10718922980459	6.5324778582162	6.38115102738356	6.58417664831126	6.5219600464527	0.372316180579576	0.0926567512216949	0.332957133239551
Merged-chr16-4667386-3	chr16	4667293	4667493	+	898.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 6 of 27)	intron (NM_030205, intron 6 of 27)	12327.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	3.46929961658355	3.71829601080573	3.46972615589738	3.51664548763976	3.88742909900402	3.64484746970686	3.51557684597566	3.87747048276363	0.613029785515226	0.204231177309774	0.507425868749117
Merged-chr12-113119684-4	chr12	113119578	113119778	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054081, intron 3 of 19)	intron (NM_054081, intron 3 of 19)	-20558.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	4.92174120314186	4.81290813776189	4.92254299177899	5.45545819169111	5.56886101062454	5.21515120708354	5.46634665889262	5.65735948877293	0.732601683837449	0.0313661159462148	0.172455489489852
Merged-chr15-63978218-3	chr15	63978121	63978321	+	887.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	MTC|LTR|ERVL-MaLR	19845.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	2.72462986212493	3.21929853700964	3.0544195432095	3.05871614188982	2.82803012863583	3.040404698182	3.04293042119676	3.05281268608335	-0.160492137053979	0.794272456581139	0.920444127299484
Merged-chr7-137411631-4	chr7	137411547	137411747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029886)	promoter-TSS (NM_029886)	-891.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	7.0050629092641	6.98532391758067	6.84676905939546	7.2366393736199	6.97720573493504	6.72289852769857	7.20800872492787	7.16483209982846	-0.00742388269621795	0.972056670033899	0.989871265506065
Merged-chr12-109525774-4	chr12	109525672	109525872	+	702.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15224.0	NR_027652	17263.0	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	3.86943006197632	4.05250254618691	4.06594815938799	3.71344716957427	4.24451153358774	3.93715284890748	4.21578527837939	3.69909423309952	0.341880681211359	0.454698573659015	0.738471485031489
Merged-chr14-73433679-4	chr14	73433572	73433772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48383.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	6.39513753336785	6.26678398322114	6.28479730194626	6.58127759742294	6.44740126906661	6.44207615738921	6.61874463007585	6.51029818153169	0.14963417304503	0.497410355148742	0.767076255939255
Merged-chr10-30719012-6	chr10	30718894	30719094	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 3 of 14)	intron (NM_001358842, intron 3 of 14)	-63127.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	4.85009440079199	4.52814643643588	5.21329726275445	4.64077365890928	5.09020918388716	4.989076616422	4.93628101710179	5.39518596256929	0.577817918031877	0.101460801973378	0.349490825767668
Merged-chr12-34433135-4	chr12	34433015	34433215	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024124, exon 4 of 12)	exon (NM_024124, exon 4 of 12)	95774.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	4.72171353092156	4.97283371248676	4.6397597424128	5.01161655995622	4.94985651803805	4.81591249851609	4.9518904447255	4.79706510819037	0.0432477183693181	0.897114992935462	0.961538143083169
Merged-chr1-60973768-3	chr1	60973655	60973855	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4159.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	5.35845353920312	4.8716256407961	5.33415311821145	5.60435927695793	4.41807412005065	4.2409750269301	4.21292109581755	4.87415197069488	-1.76814993376705	9.86773314915897e-06	0.000271817096681109
Merged-chr15-93519111-4	chr15	93519000	93519200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033217, intron 1 of 7)	CpG	76791.0	NM_001033217	106042.0	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	5.64986514292607	5.91082555099117	6.31943277236898	5.83740231346607	5.2334735970525	5.25527373466071	5.45702187024147	5.62061201810886	-0.927239722640281	0.0016446212047636	0.0200965652762006
Merged-chr17-83732962-4	chr17	83732869	83733069	+	973.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 3 of 16)	B3A|SINE|B2	26806.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	4.76963247740057	5.38775268873279	4.93534087344846	5.11820410469894	5.49884516548214	4.99446266487408	5.33376799013056	5.5375988250722	0.518037949392296	0.116162192457254	0.377075323577067
Merged-chr1-54925805-6	chr1	54925724	54925924	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	CpG	563.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	4.58546232414529	4.5130032432593	4.6929710177222	4.26273000331756	4.20669703805508	4.42369821541835	4.32174483558998	4.29254372085632	-0.471819072840846	0.22470320099119	0.533204797899567
Merged-chr7-66060534-4	chr7	66060446	66060646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152094, exon 1 of 8)	non-coding (NR_152094, exon 1 of 8)	210.0	NM_021336	68981.0	Mm.22362	NM_021336	ENSMUSG00000030512	Snrpa1	1500015N06Rik	small nuclear ribonucleoprotein polypeptide A'	protein-coding	6.19907306240962	6.16502303172612	6.038364268422	6.31114650330594	5.87426142795421	6.05456806337908	6.02884097560469	6.1174954150827	-0.276901937893515	0.239285394693962	0.549703033561985
Merged-chr9-53010919-3	chr9	53010807	53011007	+	923.711121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44B|LTR|ERVK	237205.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	3.9012513114952	3.92100067171543	4.36735568900206	4.19106351173035	3.55565084363453	3.67206538918858	4.15737115901037	3.79326798065746	-0.833900718446141	0.0841793634669173	0.315607211599247
Merged-chr5-147725813-4	chr5	147725735	147725935	+	762.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010228, exon 1 of 30)	5' UTR (NM_010228, exon 1 of 30)	153.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	3.80093755914181	3.46937041723062	3.88987981026516	3.41914907100316	3.66728454896639	3.60863510161607	3.29423753519626	3.54711879819854	-0.351210828689365	0.501910599391805	0.769448365511349
Merged-chr16-27436710-3	chr16	27436658	27436858	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025615, intron 7 of 9)	intron (NM_001025615, intron 7 of 9)	47802.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	3.64260456844706	3.45712096778696	3.83329990151025	3.86839681670195	3.28918356481204	3.76153705825095	3.28169403936963	3.4180208708843	-0.881760367954091	0.0971543132505815	0.341549210394781
Merged-chr11-16988037-4	chr11	16987941	16988141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 5 of 9)	intron (NM_019549, intron 5 of 9)	20677.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	6.15207124679184	6.97024240084243	6.64841424726654	5.84609348070168	6.34021994005075	6.1768295579857	6.41689220788687	5.84344762864812	-0.385002454140182	0.222621447653361	0.530728875055049
Merged-chr19-34685053-1	chr19	34684953	34685153	+	812.5	f0_balb.idr	intron (NM_172838, intron 2 of 6)	intron (NM_172838, intron 2 of 6)	44164.0	NM_008331	15957.0	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	3.74379091092426	3.67422190019574	3.79127101350296	4.17579631700187	3.17178879804564	3.18636243255706	3.3458115670465	3.47814765582512	-1.9953422347406	0.000361714134497368	0.00591169526439592
Merged-chr13-35906099-4	chr13	35906067	35906267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145938, intron 1 of 7)	CpG	180.0	NM_145938	208366.0	Mm.35545	NM_145938	ENSMUSG00000021418	Rpp40	D8Bwg1265e|Rnasep1	ribonuclease P 40 subunit	protein-coding	6.504490430828	6.86341206600222	7.15794950408567	6.82505182059273	6.43145924777463	6.51686223627019	6.5066378571667	6.98689208218224	-0.328594969875119	0.176093837188527	0.471068221483845
Merged-chr5-92369281-4	chr5	92369185	92369385	+	744.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-5989.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	3.90690027289509	3.91706121959366	3.57614181958767	3.82543424113655	4.08398974057211	4.12421647059702	3.79076034162739	3.80391459320323	0.413003062334896	0.360727841122329	0.665956879382999
Merged-chr8-128701150-3	chr8	128701046	128701246	+	723.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010578, intron 1 of 15)	Lx3_Mus|LINE|L1	15492.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	3.17758205352282	3.35692440498572	3.4016248252886	3.2475159692708	3.07005081475252	3.35009016853788	2.97262526689615	3.34735999356731	-0.399226393902488	0.477528943185503	0.753692683644528
Merged-chr2-70704629-4	chr2	70704588	70704788	+	979.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43179.0	NM_027352	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	4.0885982631093	3.96378817908488	4.2685324920116	3.2968810730494	4.29402445170723	4.11576583856301	4.16277299993809	4.45901435554729	0.813909249584326	0.103375064494266	0.353254142575597
Merged-chr2-167802791-4	chr2	167802670	167802870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111593.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	7.56982752340158	7.05300679473611	7.81398914810583	7.93842650618923	7.24645330181453	6.49892486485401	7.78300478037508	7.47631610649022	-0.403719685898167	0.352253298394066	0.659434998853064
Merged-chr16-23993402-4	chr16	23993293	23993493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4541.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	6.72606836603821	7.11249866448745	6.91851325138625	6.84767950665991	6.65761268922199	6.62554835509776	6.72205031295427	6.5144235456105	-0.390546028996245	0.0584176118264925	0.254085376852912
Merged-chr5-31512683-4	chr5	31512589	31512789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133756, exon 14 of 14)	3' UTR (NM_133756, exon 14 of 14)	14073.0	NM_028150	72195.0	Mm.164187	NM_028150	ENSMUSG00000053134	Supt7l	2610524B01Rik|6030455L14Rik	suppressor of Ty 7-like	protein-coding	5.69353452601241	5.40437916639692	5.32153678833263	5.27952235118777	5.5473174150291	5.58541964221048	5.19951173609007	5.37832034154366	0.0287730840737817	0.921559743630375	0.9709178534782
Merged-chr1-93072619-4	chr1	93072530	93072730	+	951.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294150, intron 8 of 46)	intron (NM_001294150, intron 8 of 46)	9850.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	4.59076210734587	4.62119661143757	4.42321454103928	4.18176074463788	4.64433115316264	4.59867164383495	4.84884751900476	4.50722134878028	0.459994281793471	0.21718742109893	0.523995275425022
Merged-chr11-69418990-4	chr11	69418878	69419078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5303.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	8.7481657361818	8.86987202727655	8.85117077630869	8.60390771727024	8.94981914309432	9.01741088148531	8.99240738982662	8.86497640944489	0.235689785142696	0.110832735069939	0.367783834477537
Merged-chr9-96350239-4	chr9	96350148	96350348	+	860.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357213, intron 1 of 7)	intron (NM_001357213, intron 1 of 7)	13467.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	4.01209030241879	4.48436479259136	3.80069833831894	3.83674930058736	4.02231650913502	4.13663974881443	3.99556776395251	4.01028911919345	-0.0519552471013994	0.909329110177879	0.966300488035004
Merged-chr1-95451108-4	chr1	95451029	95451229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137501.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	7.2267196602406	7.12780728065389	7.39852349811438	7.6359376089559	7.10309940928514	6.84750622217072	6.93063148090883	6.90682219151516	-0.568825236999928	0.00629789860699556	0.0562033757456541
Merged-chr11-83224007-1	chr11	83223907	83224107	+	624.0	f0_c57.idr	intron (NR_015519, intron 1 of 3)	intron (NR_015519, intron 1 of 3)	431.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	3.27943443160996	3.3681682300106	3.21770850864912	3.24963683513721	3.57411196289119	3.45260603564061	3.26824945725693	3.59832501789402	0.710525767894635	0.166122964809943	0.457180007581197
Merged-chr4-62661717-4	chr4	62661621	62661821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-12253.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	7.01051109299555	7.04283984945855	6.95002410437693	7.2393432113308	6.80582103417571	6.50371777247217	6.8233545975263	6.58089865468749	-0.536453248763174	0.00938737507846269	0.0754839551186055
Merged-chr6-117817193-4	chr6	117817093	117817293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23988.0	NM_001346649	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	5.35460041941806	5.4011320184903	5.12943961638175	5.64804503271024	5.09003654948672	5.4697812802771	5.23756866057766	5.61736182074609	-0.0946011661718072	0.762521989258686	0.906975368428852
Merged-chr2-160363351-3	chr2	160363251	160363451	+	973.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010658)	TTS (NM_010658)	3714.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	4.26235092557065	4.3337648894944	4.50072766094162	4.17374188145196	3.96517447553469	4.094284425322	4.15456269139001	4.21603618395758	-0.529762077978936	0.191994860186643	0.491529020831217
Merged-chr11-103361593-4	chr11	103361502	103361702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205236, intron 2 of 17)	intron (NM_001205236, intron 2 of 17)	2090.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	6.25741816895563	6.56952373129474	5.68532958459713	6.34989662930221	6.11936806298715	6.00108774100353	6.24463356259633	6.01084200240352	-0.250923556113809	0.354163364960462	0.660907483798357
Merged-chr2-167844194-4	chr2	167844100	167844300	+	945.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88127.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	4.58092963846765	3.78121445179507	4.13316788625777	4.25549950461733	4.48646256360737	3.8606765223274	4.48934746927242	4.22473316564536	0.187556963115314	0.687411105718688	0.872252468458984
Merged-chr4-86657364-4	chr4	86657251	86657451	+	894.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007408, exon 8 of 8)	exon (NM_007408, exon 8 of 8)	12708.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	4.80994709785027	4.7511879777828	5.26342504999449	5.39632369049	4.39183422100734	4.23817707620479	4.41447301965495	4.65349886449337	-1.41082610907433	0.000277106507622964	0.00475395615957941
Merged-chr3-108865321-4	chr3	108865206	108865406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165965, intron 8 of 11)	intron (NM_001165965, intron 8 of 11)	24702.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	6.33238753890841	6.28794125490112	6.83336302231863	6.53112125408864	6.18275181068943	6.51000322465927	6.55197534347382	6.12780880030948	-0.239908107183399	0.33110896872639	0.642297043289104
Merged-chr16-45122699-1	chr16	45122599	45122799	+	787.0	f0_balb.idr	intron (NM_026439, intron 5 of 7)	intron (NM_026439, intron 5 of 7)	28688.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	3.09251245836381	3.19162895594714	3.42950931121364	3.18185353193382	2.47945803659299	2.57876333492632	2.55033519255631	2.70980755259353	-4.10298450689764	2.64829566344961e-05	0.000652259643697854
Merged-chr2-31763468-4	chr2	31763373	31763573	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	3300.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	5.51211548456794	5.54104484141636	5.61469040715758	5.63244790556209	5.2841929209044	5.3594703592188	5.3168817065565	4.99508161027255	-0.589708944541507	0.0368746479713692	0.19126288478861
Merged-chr1-136415351-4	chr1	136415322	136415522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024328)	promoter-TSS (NR_024328)	97.0	NR_024328	320054.0	Mm.208000	NR_024328	ENSMUSG00000097403	9230116N13Rik	-	RIKEN cDNA 9230116N13 gene	ncRNA	7.35312105000256	7.6172586096033	7.39537007845555	6.95308646803657	7.46132312962523	8.07252842902165	7.45526063182447	7.70091292772984	0.464151533466899	0.043584729963929	0.212487499596062
Merged-chr11-101963959-6	chr11	101963874	101964074	+	960.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024449, exon 2 of 2)	exon (NM_024449, exon 2 of 2)	3041.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	3.96523802061863	3.4909270999618	3.67169150024813	3.85604747525753	3.82889863970122	3.94748600364424	3.65744404211013	3.66969950216588	0.0578585622603047	0.903225812888655	0.96418471996456
Merged-chr10-19563544-2	chr10	19563444	19563644	+	932.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28405.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	3.06108847400566	2.83812074350287	2.60025287463684	2.34044956024532	3.11104148118507	3.17609455478657	2.87204113940936	2.88127614547442	1.22343546150903	0.0903716094919211	0.32831427455258
Merged-chr1-93668939-4	chr1	93668849	93669049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16626.0	NM_016778	51800.0	Mm.3295	NM_016778	ENSMUSG00000026278	Bok	matador|mtd	BCL2-related ovarian killer	protein-coding	6.39567471846803	6.29772893653565	6.27412693108544	6.28676772308167	5.7732327399112	6.11634521205619	6.34729819825234	6.09206011453828	-0.345206422197802	0.154784925438714	0.440177211123282
Merged-chr6-28421723-4	chr6	28421630	28421830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028900)	promoter-TSS (NM_028900)	-6.0	NM_028900	74375.0	Mm.332950	NM_028900	ENSMUSG00000029708	Gcc1	4932417P04Rik	golgi coiled coil 1	protein-coding	8.27753419957805	8.18889031407356	8.2959224800209	8.2808474283079	8.40263704954325	8.47352314322387	8.50627951395829	8.38295158628828	0.227866986622588	0.120821357181303	0.38487103973184
Merged-chr8-36953252-6	chr8	36953163	36953363	+	693.694458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001194940)	promoter-TSS (NM_001194940)	-821.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	2.68123536614408	2.48336237641087	2.5464288219746	2.79424833368849	2.63107584628019	2.78683671555865	2.79313522489281	2.80243006915986	0.535312660446572	0.421660446226099	0.714113896289924
Merged-chr16-32099767-4	chr16	32099664	32099864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025892)	promoter-TSS (NM_025892)	-37.0	NM_024464	72084.0	Mm.37613	NM_024464	ENSMUSG00000023791	Pigx	2010319C14Rik|PIG-X	phosphatidylinositol glycan anchor biosynthesis, class X	protein-coding	6.74163365472822	6.64694154326978	6.20356217026406	6.4093343870632	6.9271505544035	6.81590854438587	6.93929037534541	6.36156994276355	0.390556672997343	0.105415100302341	0.35737004307584
Merged-chr17-87613559-3	chr17	87613452	87613652	+	884.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22427.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	4.1064981417916	4.14606533560827	4.75120790938115	4.09653968630024	3.75811640302072	4.18326559046304	4.39191258786298	4.05446293455733	-0.467669417058781	0.313553934701212	0.625499720246002
Merged-chr5-124482776-4	chr5	124482627	124482827	+	773.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029532)	promoter-TSS (NM_029532)	-428.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	3.37450216019224	3.55340917090304	3.06318096869294	3.34512686471764	3.24688790460595	3.30825792088842	3.36184043705629	3.52930045337667	0.0543148311531432	0.920234292394771	0.970412997665404
Merged-chr2-58161128-4	chr2	58161046	58161246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1024.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	7.84816837732721	7.50431141771425	7.93653300205108	8.0324130646298	7.96120248436588	7.84120584267626	8.26500392270198	7.81376719589637	0.173573257584254	0.379838922627581	0.682282195090949
Merged-chr8-34963233-1	chr8	34963133	34963333	+	604.666687	f0_balb.idr	intron (NM_175091, intron 1 of 26)	intron (NM_175091, intron 1 of 26)	2457.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	3.23956525305535	3.52961595603497	3.1831903477366	3.20019452894396	3.12220660173485	3.03532628511875	2.91933354298832	3.1222180514959	-0.949694010581384	0.103820721385356	0.35414921268187
Merged-chr15-25407375-4	chr15	25407258	25407458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	6406.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	6.22559541702308	6.70230119678136	6.35841653988559	5.9552670395854	6.59264873220301	6.51625996530243	6.17491713214814	6.14037786650946	0.0699131195150882	0.795274570063436	0.920823289538254
Merged-chr19-44384650-4	chr19	44384555	44384755	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	23054.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	4.49817116062826	4.97974137872724	5.00771605893318	4.80730309416811	4.72919348783597	4.53736747608031	4.60495318308044	4.30452749231348	-0.590730118119296	0.110852941341466	0.367816591075155
Merged-chr13-9276571-4	chr13	9276468	9276668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081426)	promoter-TSS (NM_001081426)	43.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	7.31446345288452	7.48379403238834	7.14855287955504	7.31438659391684	7.47567374827345	7.62133274023023	7.48930791497523	6.97825878273673	0.122520465688084	0.553160505257959	0.799996172130692
Merged-chr5-90908541-3	chr5	90908512	90908712	+	848.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3D|LINE|L1	4713.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	3.14908185780611	3.03870547604823	3.26341521346118	2.73724358303976	3.40274586867277	3.06874078759535	3.4484407759306	2.88611583289517	0.651045041962175	0.299953110072454	0.612179983023751
Merged-chr2-83724412-4	chr2	83724317	83724517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008402)	promoter-TSS (NM_008402)	20.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	7.27730224918812	7.53459855306776	7.69198590004474	7.92983108130103	7.6797332090625	7.85279122932408	7.79333788474532	7.60208438034287	0.119047166905048	0.554149257834282	0.800547787205178
Merged-chr3-88142658-1	chr3	88142558	88142758	+	1000.0	f0_c57.idr	5' UTR (NM_133665, exon 1 of 11)	5' UTR (NM_133665, exon 1 of 11)	286.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	6.41600421448777	6.7221581723183	6.80059994694566	6.37178708571972	6.40197784447756	6.77581991351029	6.58237696404566	6.39457307709721	-0.0579923624023307	0.803007908402115	0.923978336762918
Merged-chr5-67845420-4	chr5	67845335	67845535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	1996.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	4.78080562491952	4.86799560177754	5.35424636491726	5.13413245433609	4.84758778750977	4.83444627285	4.75931924351503	5.18717677527703	-0.275968792898948	0.421406617117038	0.714001052191097
Merged-chr15-78301001-3	chr15	78300924	78301124	+	857.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287389, intron 1 of 11)	B4|SINE|B4	4697.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	4.25798274986598	3.83349952838307	4.29887873863852	4.2201503433626	4.35894502095326	4.00278810087775	3.9695473251847	3.63982152994168	-0.348860962424616	0.461450150876814	0.743280386722353
Merged-chr7-141558389-4	chr7	141558285	141558485	+	966.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-3795.0	NM_001357068	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	5.43092707940556	5.50865141410031	5.43187127574647	5.52659477427944	5.20573146200211	5.19723906848738	5.20062210715678	4.81428666513807	-0.656353315416499	0.0264687374212896	0.154351793954347
Merged-chr12-104836405-4	chr12	104836316	104836516	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040682, intron 1 of 12)	Lx7|LINE|L1	28660.0	NR_104436	94040.0	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding	4.46782806499508	4.75088853412648	4.9104768923094	5.13017855169242	4.8022972369067	4.27618066706857	5.15785492188659	4.87273218654626	-0.0663759976613007	0.868508510408964	0.950757933022268
Merged-chr1-177714197-4	chr1	177714100	177714300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-15614.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	5.27332505471483	5.08628896868854	5.27422938731027	5.56616821675589	5.08747391716774	5.223178454129	5.02338156416162	5.04423578037646	-0.435459477961628	0.16007059756327	0.447934622737694
Merged-chr1-91092617-4	chr1	91092505	91092705	+	989.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 9 of 22)	intron (NM_008515, intron 9 of 22)	39161.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	4.81227091380277	5.1849009988553	5.35796363413837	5.43011542697511	5.39986018546259	5.11189110271806	5.27491695984095	4.96905435622918	-0.0428609334547366	0.896051386766344	0.960994089571403
Merged-chr11-87764503-2	chr11	87764428	87764628	+	968.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172449, intron 5 of 31)	CpG-2413	3987.0	NM_172449	207777.0	Mm.342019	NM_172449	ENSMUSG00000034156	Tspoap1	Bzrap1|D230016K05|PRAX-1|mKIAA0612	TSPO associated protein 1	protein-coding	3.67974360746707	3.43641371327572	3.12989286188181	2.87721401352075	3.28220592244422	3.03939651931377	2.91978780291924	3.06447903184347	-0.855918716595857	0.185300565213076	0.483202994259289
Merged-chr7-100505243-4	chr7	100505159	100505359	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153527, intron 5 of 7)	intron (NM_153527, intron 5 of 7)	9556.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	4.3356108600755	4.28968836420701	3.98732193078478	4.14517459527866	4.7969984700382	4.98721217832919	5.23566403395676	5.56882945870592	2.06387357513688	1.0055665794149e-07	4.30657181445085e-06
Merged-chr18-82912274-4	chr18	82912169	82912369	+	992.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183033, intron 1 of 5)	intron (NM_183033, intron 1 of 5)	1390.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	4.98629585074816	4.82362802289278	4.76535145738569	4.54856220474968	5.06781717399007	5.05567162443765	5.2607628616927	5.01718938857766	0.659530337586126	0.042489335199873	0.20931195170543
Merged-chr18-65697791-4	chr18	65697694	65697894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177028)	promoter-TSS (NM_177028)	-474.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	7.61894711356311	7.08016351378419	7.4509028390899	7.83581022150837	7.4948037909104	6.98326724010857	7.50568183652384	7.63156165462786	-0.137759164265968	0.556985870038144	0.802252160011434
Merged-chr17-54003731-4	chr17	54003624	54003824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-13093.0	NM_018751	20888.0	Mm.10108	NM_018751	ENSMUSG00000023943	Sult1c1	(PST)G|P-SULT|ST1C1|Stp2|Sult1a2|mOLFST	sulfotransferase family, cytosolic, 1C, member 1	protein-coding	6.95379965641636	7.10527448928536	7.43955737659585	7.62866687941506	6.86897276394753	6.77118305881801	6.97110761339458	6.76651169848105	-0.651098694178756	0.00369407667136933	0.0376136008259333
Merged-chr6-108246511-4	chr6	108246411	108246611	+	881.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	33415.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	3.83856341512674	3.91009953884056	3.94019567671662	4.48250796471832	3.85525129653441	3.84856847406364	3.8745914729267	3.66920777359827	-0.76446698037689	0.112701254233812	0.371232476056666
Merged-chr19-21781653-3	chr19	21781576	21781776	+	626.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031997, intron 2 of 24)	intron (NM_031997, intron 2 of 24)	3336.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	3.46388688799962	3.45212115949756	3.68565444407599	3.57371967800191	3.81545095370814	3.45167829955387	3.76700940809246	3.82730647575054	0.560114533884337	0.244612396622176	0.555806001588614
Merged-chr10-39436296-4	chr10	39436191	39436391	+	796.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	66492.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	3.47061594561097	3.67312113671299	4.24748014069375	3.89200551607578	3.9624661598469	3.83244295619494	3.90029626968145	3.59556339306102	-0.0551335173698546	0.912697972060697	0.967315797398874
Merged-chr7-64360235-4	chr7	64360151	64360351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177893, intron 8 of 13)	intron (NM_177893, intron 8 of 13)	13844.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	6.28467239927088	5.84661456672917	6.1765365183904	6.44197006583825	6.04171632357548	5.87484622470402	5.89432759422147	5.71947514568415	-0.503593984806234	0.0544304071641785	0.243534247246073
Merged-chr10-88584637-4	chr10	88584517	88584717	+	957.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175418, intron 2 of 28)	intron (NM_175418, intron 2 of 28)	20535.0	NM_001252372	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	4.70373416388592	4.23365281603662	4.10044377235974	4.78261388322194	4.67708613323558	4.87618789250964	4.64468667882494	4.90645912857433	0.583893267351749	0.14673227200823	0.427220370158867
Merged-chr1-95381214-4	chr1	95381111	95381311	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	UCON29|DNA|PiggyBac?	67583.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	4.74988220428282	5.000352306405	5.52695447936792	5.41821480765616	5.09646488984828	4.88772921744816	5.06248330481454	4.83020769445657	-0.458050790846669	0.190917264838633	0.490311892807621
Merged-chr7-80033543-4	chr7	80033437	80033637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	ID4|SINE|ID	7309.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	6.01570014253122	6.06980499913696	5.69758434995616	5.66281840292854	6.49179305103599	6.14896339532131	5.80024733111448	6.4480538149606	0.610389477047345	0.0265540997452656	0.154634235929662
Merged-chr7-71876286-3	chr7	71876184	71876384	+	911.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33411.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	4.13909443839125	3.88437004532437	3.8825796164721	3.89357361333856	3.48470685297041	3.95576541666329	3.42158167636851	3.49626995949234	-1.06416636534282	0.0323935616995155	0.176226825675032
Merged-chr18-80257802-4	chr18	80257719	80257919	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025861, intron 2 of 5)	intron (NM_025861, intron 2 of 5)	1513.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	4.9751043747347	5.00465995630184	5.27626390381337	5.31560292552516	4.66459248455646	4.40579430849209	4.88260049846455	4.82921736017129	-0.906762672994203	0.0083574793892525	0.0692342283255808
Merged-chr5-8081332-4	chr5	8081219	8081419	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310439, intron 29 of 29)	intron (NM_001310439, intron 29 of 29)	24777.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	4.02959537624495	4.32552479432584	4.66522911127001	4.80538207526161	4.09931648428277	3.97916066391074	4.38701417617393	4.18217304125353	-0.801652387137323	0.0688774685823794	0.280486831982676
Merged-chr10-96214067-4	chr10	96213964	96214164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12143.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	5.73742356382512	5.49073840519862	5.59314648538505	5.58224173062835	5.53820321643392	5.31212320123478	5.42998280771309	5.53658745732572	-0.236344128063337	0.381521465155489	0.683745407968944
Merged-chr9-21220673-4	chr9	21220563	21220763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18669.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	6.9863390846338	6.90572129615232	6.65200077006365	6.89308901320763	7.04653907398352	6.90658626519681	6.86365703764087	6.70974019144517	0.0364674592275355	0.857473837592295	0.94630421453682
Merged-chr5-90895900-2	chr5	90895800	90896000	+	972.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	4655.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	3.40300011642368	3.28953953885344	2.97126492561809	2.47767591222253	2.91044203778523	3.14833309126133	2.89552878583698	2.68696778814396	-0.685254241639449	0.347448351818183	0.655506340921964
Merged-chr5-99242616-4	chr5	99242537	99242737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 2 of 13)	intron (NM_181318, intron 2 of 13)	10290.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.5180723743275	6.36238885298668	6.22963108049045	5.92372939770775	6.01968479314455	5.97063322144937	5.49146907910374	5.57503835670282	-0.407541413044716	0.18343402377521	0.480447835527512
Merged-chr10-53914187-4	chr10	53914075	53914275	+	931.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 11 of 12)	intron (NM_008548, intron 11 of 12)	161621.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	4.69589298620016	4.4559503156434	4.58378719587387	4.68761479251712	4.34619641272537	4.59075908395552	4.15315107513146	4.79694368001402	-0.275174646317573	0.474515671638787	0.751750703074855
Merged-chr2-60948396-4	chr2	60948281	60948481	+	865.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	14823.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	4.06087741153193	4.23835683400368	3.96181647631519	4.25717361975184	4.15873047236382	3.97377508841013	4.13603343734558	4.10620035377094	-0.123570977081997	0.764668979556728	0.907812114625849
Merged-chr9-100545341-3	chr9	100545236	100545436	+	820.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 1 of 3)	intron (NM_010878, intron 1 of 3)	798.0	NM_010878	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	3.94063126019186	4.00097465291474	3.63669552982343	3.96528539096785	3.71720001145833	3.81071299907183	3.67844228793715	3.576409537783	-0.597243279553868	0.198678242563545	0.500290749900258
Merged-chr1-184027222-4	chr1	184027105	184027305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	6793.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	5.78786536298304	5.51668791852136	5.76439026222429	5.79504235237333	6.01126295006946	5.54148167769538	5.91773897003745	6.15907793620058	0.338196548121142	0.207172500259324	0.511175781726586
Merged-chr12-80847008-4	chr12	80846927	80847127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178682, intron 2 of 5)	intron (NM_178682, intron 2 of 5)	56495.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	7.07203749280707	6.85126403897902	7.42089368513708	7.18429747675686	6.92553480218653	6.6043122313633	7.0493021242951	6.87770916376927	-0.372810803461567	0.0866342531237981	0.321135001654657
Merged-chr13-31806505-4	chr13	31806391	31806591	+	876.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008592)	promoter-TSS (NM_008592)	-155.0	NM_008592	17300.0	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	4.52295130191934	4.25563935533525	4.70171826486448	4.7176713180103	4.32696488246126	3.88919131567466	4.38321236058982	4.17103625192386	-0.83901611240382	0.0437127650150881	0.212820171067644
Merged-chr4-8709743-4	chr4	8709648	8709848	+	782.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277149, intron 1 of 37)	intron (NM_001277149, intron 1 of 37)	19342.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	3.90454883728551	3.71200831413436	3.85379486685017	4.2663726187701	4.12594570220439	3.74323283348831	3.98472611300494	3.99953905931475	0.0188461589989654	0.967970589243722	0.98865348920078
Merged-chr10-93471597-4	chr10	93471413	93471613	+	878.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008517, intron 10 of 18)	intron (NM_008517, intron 10 of 18)	-17255.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	3.21676656123759	3.11970045235086	3.2842887535982	3.10649352722757	3.74444875625709	3.84882235281012	3.79891047778645	3.67663360121885	2.00129656062873	5.83673331348628e-05	0.00129085736076139
Merged-chr3-89214403-4	chr3	89214297	89214497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013691)	promoter-TSS (NM_013691)	-62.0	NM_001357367	17827.0	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	6.97343973890645	7.18188749664421	6.44932692709999	6.79978946388148	7.05304284254739	7.05982457795567	6.92672626566453	7.17856828586807	0.247127896739363	0.267220804314497	0.578889139572816
Merged-chr6-136828350-4	chr6	136828268	136828468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178776)	promoter-TSS (NM_178776)	-152.0	NM_021714	60321.0	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	8.99544037428991	9.14931386722309	9.09047289563057	9.14049857675323	9.13839495997175	9.37750708284711	9.05040896335307	9.0406711812366	0.0752478941075602	0.615416503926292	0.834461661846382
Merged-chr1-85111789-3	chr1	85111691	85111891	+	654.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1938.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	4.2354061257288	4.58404391934336	4.10584328244706	3.86649046614922	3.94422919838543	3.86026887642475	3.72489507481428	3.95852323480195	-0.915231070073939	0.0511880859820899	0.234777806051883
Merged-chr1-183635280-3	chr1	183635222	183635422	+	901.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113655.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	3.17502385656446	3.22373121613486	3.48660013549056	2.4785134983211	4.46262509123781	4.83165025826843	4.37181371365147	4.354998409163	4.38916447162509	0.000736719085135915	0.0105404879921385
Merged-chr6-33965775-3	chr6	33965680	33965880	+	783.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 17 of 17)	intron (NM_009148, intron 17 of 17)	-63668.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	3.25588725239981	3.60812859647074	3.25625855919423	3.46473439654486	3.65409953806071	3.48967064616805	3.30619456760392	3.37486804751886	0.197732587958466	0.70862219589739	0.882958762044294
Merged-chr6-49214083-5	chr6	49213980	49214180	+	746.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023670, intron 1 of 14)	CpG	874.0	NM_023670	140488.0	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	3.69215205639489	3.0144122237661	3.69272198497701	3.38801234924838	3.3427256965487	3.60176205188991	3.41294954509076	3.8270490697173	0.281716972665097	0.623881963433927	0.839195335242146
Merged-chr10-8762938-4	chr10	8762831	8763031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	123139.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	6.393165544221	6.38061595472013	6.35757438340039	5.99913937201345	6.92450953989166	6.87375089587881	6.81068657886564	6.19459417067274	0.6668021514525	0.0084232494004589	0.0696270432092979
Merged-chr8-4677917-4	chr8	4677822	4678022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	64752.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	8.48675760000706	8.66639303012121	8.68673205212765	8.9864898802938	9.06648193299933	9.06312045844168	9.21795674978633	8.99601362625992	0.448187746413768	0.00721677846765571	0.0622805856048685
Merged-chr5-29681863-3	chr5	29681764	29681964	+	617.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-54034.0	NM_001359198	23950.0	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	HSJ-2|Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	3.07452119486402	3.17107031942551	3.44724554924398	2.98875742049526	2.97380828641168	3.2473417248425	3.00159188385711	2.94407094213437	-0.525832997612758	0.37730944616692	0.67996861637713
Merged-chr8-8992898-3	chr8	8992759	8992959	+	719.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	139429.0	NR_045854	71249.0	Mm.158635	NR_045854	ENSMUSG00000108848	4933430N04Rik	-	RIKEN cDNA 4933430N04 gene	ncRNA	4.00631649752268	3.93942666041941	3.8760837228352	3.36893336147143	3.76118311753701	3.42461555328594	3.43134709164057	3.72789176464054	-0.647695080128345	0.225250194377799	0.533604905018683
Merged-chr17-48278552-2	chr17	48278434	48278634	+	767.833374	f0_balb.idr|f1_balb.idr	Intergenic	RMER6A|LTR|ERVK	14239.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	3.48648292507273	3.58384642980238	3.73745456075092	3.67928989880163	3.24702641353007	3.48507733771102	3.2982452514998	3.48506047281255	-0.858675110386599	0.0933899916730966	0.334225261063872
Merged-chr17-88530047-4	chr17	88529936	88530136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028658)	promoter-TSS (NM_028658)	-88.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	8.25313570225071	8.07446342965045	8.17209530313431	7.87370015548642	8.20049078061274	8.49336069862313	8.39518947006466	8.04544423553525	0.254725957743416	0.158522189510092	0.445453291903665
Merged-chr1-23827273-3	chr1	23827171	23827371	+	696.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172124, intron 2 of 3)	intron (NM_172124, intron 2 of 3)	65345.0	NM_172124	280645.0	Mm.471661	NM_172124	ENSMUSG00000026156	B3gat2	GlcAT-S|Glcats	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	protein-coding	2.94594461561087	3.04167736087632	2.8728387560226	3.06205321586366	3.52426352481643	3.37755415550178	3.50200887794515	3.26175143061951	1.62007034278816	0.00450574980583443	0.0439874672456367
Merged-chr11-101971589-3	chr11	101971489	101971689	+	883.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028207, exon 3 of 3)	3' UTR (NM_028207, exon 3 of 3)	-4574.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	3.70079767014316	3.60418115738453	3.53805034367728	3.43819721811844	3.75932579687846	3.82034033915055	3.87323215244887	3.47703313157172	0.548753551020198	0.250088768614507	0.561176143917657
Merged-chr9-113800839-4	chr9	113800752	113800952	+	814.604126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286603, intron 1 of 4)	intron (NM_001286603, intron 1 of 4)	7522.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	3.86996865601041	3.9209790343209	4.30224265824272	4.573022085917	4.24181009338549	4.10260833168173	4.19918796423969	3.92399776672883	-0.229492595177807	0.619163917750229	0.836373658130526
Merged-chr2-127397919-4	chr2	127397827	127398027	+	939.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27272.0	NM_001081089	215456.0	Mm.440454	NM_001081089	ENSMUSG00000046338	Gpat2	A530057A03Rik|Gm116|xGPAT1	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding	4.54978672445168	4.46733541233761	4.3713159068796	4.71759253615823	4.54373155032353	4.5015814438847	4.85636663682472	4.96995993280427	0.39288846864993	0.290101036485679	0.602242881442358
Merged-chr5-114700143-3	chr5	114700045	114700245	+	859.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER54A|LTR|ERVL	-7634.0	NM_029992	77832.0	Mm.239698	NM_029992	ENSMUSG00000002486	Tchp	A930031F18Rik|AV279199	trichoplein, keratin filament binding	protein-coding	3.27998513200909	3.41185433175723	3.1540437581613	3.36859416681091	3.61941639580419	3.45191459499249	3.32695387095309	3.3937671287697	0.502622086076955	0.334947538743087	0.64529103101308
Merged-chr19-6941536-4	chr19	6941502	6941702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007522)	promoter-TSS (NM_007522)	-95.0	NM_001177362	107173.0	Mm.276555	NM_207220	ENSMUSG00000024958	Gpr137	AI428855	G protein-coupled receptor 137	protein-coding	6.01748543874198	5.96372016079351	5.48745715869229	5.78621367376429	5.90922577016974	6.27183966103867	5.83504653183821	5.78879290138963	0.21205480476035	0.433072478825876	0.722758873865112
Merged-chr4-139209048-4	chr4	139208953	139209153	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	14942.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	4.88798186973354	4.99690235211442	5.43387390075213	5.58151868945332	5.14460926781982	4.76134088824777	5.32630732670915	5.32137994660726	-0.208323430808268	0.554782334970739	0.801044670619386
Merged-chr13-17028796-1	chr13	17028696	17028896	+	883.75	f0_balb.idr	intron (NM_138654, intron 12 of 13)	ORR1F|LTR|ERVL-MaLR	665969.0	NM_138654	192136.0	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	4.13722709357652	3.64478475693098	3.89386573122967	4.27038122926672	3.25452205171929	3.31608618013173	3.39746533971867	3.27177861893555	-2.41984403638719	1.82052366743591e-05	0.000468994043157512
Merged-chr11-29172844-4	chr11	29172752	29172952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134034)	promoter-TSS (NM_134034)	-55.0	NM_134034	104570.0	Mm.276386	NM_134034	ENSMUSG00000020463	Ppp4r3b	AW011752|AW557776|Smek2|mKIAA1387	protein phosphatase 4 regulatory subunit 3B	protein-coding	8.07607423162327	7.87015921446684	8.03914237388847	7.79199570815059	7.87233368270095	7.90927947049524	8.12946095340622	7.79916811694414	-0.012256858215081	0.94368082261457	0.979729540152894
Merged-chr5-122089084-4	chr5	122088991	122089191	+	896.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11860.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	4.63565770200762	4.2618276051454	4.09050343033218	4.2609942488017	4.23013895299587	4.36595960848007	4.47088911228313	4.23611483377026	0.00909313945966966	0.981791580040951	0.993492379943959
Merged-chr19-53895011-4	chr19	53894912	53895112	+	899.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011050, intron 1 of 11)	intron (NM_011050, intron 1 of 11)	2781.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	4.27970387433481	3.75271066757831	4.09972491853329	4.46173828329301	4.14842593486016	4.27267063730085	4.21856473147128	4.14482165208436	0.0141306937159506	0.974398182484487	0.990880609058694
Merged-chr11-95844903-4	chr11	95844802	95845002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023121, intron 2 of 3)	intron (NM_023121, intron 2 of 3)	1657.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	5.57417975361764	5.23916365049194	5.97186111301097	5.37764866845321	5.35944099253065	5.32696924644684	5.52089385782623	5.51825692876266	-0.217077352647479	0.478142033599285	0.754275654563584
Merged-chr19-47464702-3	chr19	47464621	47464821	+	915.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164717)	promoter-TSS (NM_001164717)	-310.0	NM_008018	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	4.10933351729659	4.06510519539762	4.60921136057497	4.06521553338658	3.93621897559266	3.97268595134297	4.04459591982395	4.1074475686642	-0.544988215577393	0.211391075733224	0.516008044030918
Merged-chr2-144247513-4	chr2	144247417	144247617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18685.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	6.69549441771803	6.63023508683948	6.60653974517807	7.12316776672279	6.13853719458097	6.27532367769812	6.63327985403446	6.50476941605982	-0.582078237473926	0.0179958640657035	0.119167141904615
Merged-chr17-50149966-4	chr17	50149924	50150124	+	816.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	40473.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	3.69544526775803	3.83524013009098	3.41145268843839	3.37444314260663	3.80259084888838	3.762000022144	3.57546524747899	3.69382788417958	0.39755743467657	0.420469138994039	0.713274332060183
Merged-chr10-59981035-4	chr10	59980924	59981124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21781.0	NM_026937	69090.0	Mm.155839	NM_026937	ENSMUSG00000044475	Ascc1	1810015P09Rik|AI550520|ASC1p50|CGI-18	activating signal cointegrator 1 complex subunit 1	protein-coding	6.73547993621345	6.40282306137514	7.05537534439166	7.51807610148247	6.23249743527221	6.52840436395171	6.29661809048214	6.84285344535847	-0.72799024147137	0.013290862047459	0.0964943155524365
Merged-chr18-80691823-8	chr18	80691738	80691938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 2 of 9)	intron (NM_198429, intron 2 of 9)	16335.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	5.12965881905924	5.28887434819681	5.75818430137051	5.53537032574582	5.41082664543072	5.40809174614915	5.23860395410858	5.19570523128705	-0.237780381238293	0.433385144881294	0.722922849286555
Merged-chr5-88564899-4	chr5	88564811	88565011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289775)	promoter-TSS (NM_001289775)	-129.0	NM_001289774	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	7.5584140946544	7.58093075819026	7.46856065439328	7.46085246643499	7.50622615973395	7.5372337361468	7.50485126528999	7.23606799834097	-0.0832564126054376	0.635993247391233	0.845986164419408
Merged-chr4-62266287-4	chr4	62266188	62266388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS_Mus|LTR|ERV1	-20141.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	4.41610941874092	5.5044906562634	5.52111658096847	3.59384515193331	5.67787086128955	5.32822855841258	5.4921196652264	5.49200695854553	0.83526594744085	0.303562868190428	0.616171939285553
Merged-chr1-87625469-4	chr1	87625388	87625588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	L1MB7|LINE|L1	5176.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	6.32201375191883	5.87846807838667	5.90242385798389	6.29573818568362	6.30282662438184	6.19878981609513	6.35993871813047	6.60486272896382	0.373824484639026	0.134447841636249	0.4081057574053
Merged-chr15-4025486-2	chr15	4025386	4025586	+	978.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024188)	promoter-TSS (NM_024188)	-942.0	NM_024188	67041.0	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	2.97339465918345	2.98918864601344	2.90871581365785	3.27051337496315	2.97468727608972	3.20428610442274	3.08325829248529	3.03417922700692	0.0656781504081523	0.912188861835036	0.967198563604406
Merged-chr2-118976489-4	chr2	118976386	118976586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	49989.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	5.94766617540001	6.36032250116277	5.80620663507776	6.22402292349015	5.71423801068579	5.73757220575601	5.80146869581665	6.24275134901999	-0.353571493540819	0.199954720680886	0.50185984431534
Merged-chr14-43925211-4	chr14	43925117	43925317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-1849.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	6.29530003472718	6.3979295262276	5.60132383030412	5.65110339862981	6.22340221469369	6.07008703225427	5.9974832063418	5.88915742089327	0.0399011507948577	0.893218623669258	0.960083663472744
Merged-chr7-34912330-4	chr7	34912233	34912433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008820)	promoter-TSS (NM_008820)	-74.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	7.40065578692949	7.29037064277107	7.26995508293035	7.300977298002	7.18775221616891	7.40341770416551	7.48415886203496	7.06834533013611	-0.0304720135707781	0.871331771666613	0.951599910632265
Merged-chr8-35654438-4	chr8	35654354	35654554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-65434.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	6.52202401364091	5.59652868423426	6.5072043918469	6.87275346812362	6.52952722037057	6.0285294130558	6.75866246354785	6.15288600393999	-0.0847078964927532	0.795767895125021	0.920932655997136
Merged-chr7-142395165-4	chr7	142395050	142395250	+	891.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-7280.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	4.00130467408064	3.6029763033773	3.95182062666487	4.28659843976494	3.82532958067752	3.85116925707895	4.16550157639292	4.48252312753355	0.294384142854414	0.551661943966243	0.799073691139046
Merged-chr2-163532178-3	chr2	163532069	163532269	+	789.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312906, intron 1 of 10)	intron (NM_001312906, intron 1 of 10)	9552.0	NR_027970	68314.0	Mm.46190	NM_197983	ENSMUSG00000046840	Hnf4aos	0610008F07Rik	hepatic nuclear factor 4 alpha, opposite strand	ncRNA	3.65756205199156	3.37426882473442	3.45084518814023	3.29235010504338	3.24565861063422	3.62311130086054	3.25929621514098	3.70269883648622	0.0871148040863372	0.870745770303507	0.951430072143722
Merged-chr1-43447001-4	chr1	43446915	43447115	+	847.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	1264.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	3.40203842653564	3.57123624635027	3.62213886651684	3.60212116453614	3.60963717669718	3.45357740136009	3.55642580370773	3.51508350699378	-0.0568555565762519	0.906948238427344	0.965481261274948
Merged-chr7-4900312-4	chr7	4900204	4900404	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-14913.0	NM_170759	232816.0	Mm.27442	NM_170759	ENSMUSG00000074406	Zfp628	Zec|Znf628	zinc finger protein 628	protein-coding	3.05392030687224	3.24256375275439	3.05423348920585	2.71028620236823	4.15894490373784	3.9691296773085	4.00420194623127	4.6845724017346	4.32280429273541	6.04628300829055e-13	6.73502939353854e-11
Merged-chr10-7600807-4	chr10	7600713	7600913	+	980.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359742, intron 3 of 5)	intron (NM_001359742, intron 3 of 5)	11013.0	NM_001359743	237253.0	Mm.206759	NM_172784	ENSMUSG00000019796	Lrp11	1700034J19Rik|6330533B21|9830160H19Rik	low density lipoprotein receptor-related protein 11	protein-coding	5.31936734336212	5.36775593854277	5.05803104759572	5.26783580252867	5.56214412196141	5.37089720650264	5.45885514240154	4.94088047421634	0.184121689432989	0.550698390286778	0.798673593705145
Merged-chr13-20398581-3	chr13	20398487	20398687	+	972.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 15 of 21)	intron (NM_080288, intron 15 of 21)	-74403.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	4.27255925216072	4.35473539266258	4.4273359014778	4.15404326515861	3.83915148304211	3.83895891654738	4.03229301518645	3.83586030062847	-1.10335380297465	0.0101407434396021	0.0797188405475565
Merged-chr19-32071111-3	chr19	32071017	32071217	+	768.455566	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018830, intron 2 of 23)	intron (NM_018830, intron 2 of 23)	32023.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	3.0592790673257	2.90101071488961	2.97765179703802	2.89775212989688	4.02588358996305	4.10077314550919	3.86609240611592	4.04779842485534	3.78544060541153	2.67364691950386e-09	1.58721863288878e-07
Merged-chr17-31074856-4	chr17	31074764	31074964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	17170.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	7.0040714436297	7.36910899795381	7.20555681240996	6.91673782946962	6.7276046519502	6.55623483536075	6.49286333121273	6.50381742273564	-0.773262280863597	0.000353371947119147	0.00579420912784928
Merged-chr11-19963904-4	chr11	19963810	19964010	+	984.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	39468.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	5.79055256499392	5.7669376339474	5.4260673012519	5.31867010419065	5.73952140992858	5.96447513508547	5.61896178657472	5.11726543171402	0.106880042301823	0.735076984022891	0.895431262597044
Merged-chr2-143991389-7	chr2	143991287	143991487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	19876.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	5.10964683909484	5.10064004878465	5.00850245481489	5.23161264952122	4.91482644497873	5.14757739788031	5.08562618900518	5.34360690929919	-0.00327711200380087	0.991568410907499	0.996772106195311
Merged-chr1-95597019-4	chr1	95596916	95597116	+	847.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009183, intron 4 of 4)	Lx8b|LINE|L1	70578.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	4.10578927799382	3.77258881173882	3.71439012359558	4.2938205310972	3.89355435888061	3.99669160360128	3.64273347523375	3.82199825780727	-0.453368771051428	0.344377015096401	0.652898240931887
Merged-chr17-27778034-4	chr17	27777875	27778075	+	913.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033279, intron 3 of 4)	intron (NM_001033279, intron 3 of 4)	42567.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	3.62886502573531	3.85193090243131	3.57090121990767	3.9218678060253	3.81565658861584	3.80297653062328	3.67106098568354	3.9752405384327	0.15976589272234	0.733308138816068	0.894443416491688
Merged-chr1-177131688-4	chr1	177131568	177131768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	117099.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	6.11329490839195	5.86188316140812	5.92455095679848	6.15440083778364	6.04034345300428	6.00594317426043	5.8248553791668	5.87403160777836	-0.13475177648678	0.582314411240523	0.816519074787564
Merged-chr2-52500069-4	chr2	52499972	52500172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	58539.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	5.32700688717676	5.59355140078485	5.01413941208744	5.56726394220501	5.56475091906283	5.59167190389745	5.41885083143634	5.44227121796008	0.165549134112647	0.576300168019761	0.813494688338693
Merged-chr8-40703143-3	chr8	40703040	40703240	+	802.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	28063.0	NM_010086	13526.0	Mm.67403	NM_010086	ENSMUSG00000046723	Adam24	Dtgn5	a disintegrin and metallopeptidase domain 24 (testase 1)	protein-coding	3.2131904192059	3.05120547640841	3.05795591504603	3.17328819879615	4.09416306869933	3.98074020937089	4.04625094887223	4.02433308518933	2.95366596170539	2.3811439358023e-07	9.42120312431751e-06
Merged-chr17-29489183-4	chr17	29489083	29489283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1862.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	6.67524394079796	7.3028420604156	6.75497204309703	6.63777558167526	7.42115391876994	7.27593535236524	6.9676547280869	7.02288932388155	0.440740027318368	0.0650412211140132	0.271322105003478
Merged-chr6-124741155-4	chr6	124741053	124741253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013535)	promoter-TSS (NM_013535)	-74.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	7.8066365526738	8.15153361799329	7.39131021276445	7.36909665599512	7.66476389027518	7.7416605505464	7.3128745382114	7.39643495260545	-0.232206955622212	0.322785607972051	0.634245874115738
Merged-chr16-21691857-4	chr16	21691759	21691959	+	922.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	intron (NM_001001881, intron 1 of 1)	2806.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	4.55266221066325	4.53763345568335	4.70983674775413	4.93324498787883	4.76958400797417	4.64217501305563	4.40278914601521	4.46456919658254	-0.266496992940732	0.47229748561937	0.750462332502573
Merged-chr2-71866064-4	chr2	71865969	71866169	+	978.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 3 of 3).2	(T)n|Simple_repeat|Simple_repeat	-7155.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	5.90988854146728	5.96966952624455	6.11222081081219	6.32600429040631	5.6788798323995	5.26601955076733	5.41333685766654	5.49820188077789	-1.01249552452687	0.000246537847270319	0.00431053154148963
Merged-chr12-33041631-3	chr12	33041519	33041719	+	938.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024478, intron 15 of 19)	MIRb|SINE|MIR	51256.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	4.21070969166511	3.91664533698659	4.1244045120718	4.32731643472463	4.31562809997972	3.69036643133523	4.06097865825026	3.87481064031361	-0.364488274294302	0.430162154030219	0.720791731484191
Merged-chr8-116978953-4	chr8	116978805	116979005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357254)	promoter-TSS (NM_001357254)	54.0	NM_027103	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	8.13567804761681	8.23473298706052	9.01903185261428	8.13797994975989	8.08048816830429	8.39558567000701	8.20858225224145	8.51020646553559	-0.165053517459255	0.482153230412651	0.757084112248137
Merged-chr8-75081862-7	chr8	75081753	75081953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-11765.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	5.1785610106752	5.05392109138657	4.86277337144209	5.22869275335454	5.121333859586	5.38223153943363	4.98916692768282	5.20662004204983	0.145928848610178	0.63974569849259	0.847707805592576
Merged-chr2-152671069-6	chr2	152670969	152671169	+	830.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010376, intron 1 of 11)	intron (NM_010376, intron 1 of 11)	1608.0	NM_001159552	14950.0	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	4.18293542280484	4.16543405460134	4.27050021642096	4.03298804448003	4.20761554908165	4.05878987376126	4.25111913573476	4.08786411986408	0.00566731305572871	0.988740439158515	0.995492522898152
Merged-chr6-113604807-4	chr6	113604729	113604929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133937)	promoter-TSS (NM_133937)	57.0	NM_133937	101314.0	Mm.485793	NM_133937	ENSMUSG00000033940	Brk1	6720456B07Rik|AW011779	BRICK1, SCAR/WAVE actin-nucleating complex subunit	protein-coding	5.58403312767156	5.46078458358773	5.98231734464649	5.24279196275194	5.22837900279819	5.6794224673296	5.3313115967454	5.55481816232719	-0.221354666313711	0.4835617277028	0.757887046485909
Merged-chr10-128097904-4	chr10	128097763	128097963	+	970.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054078, intron 2 of 29)	intron (NM_054078, intron 2 of 29)	5080.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	4.59858769935649	4.04763226937638	4.30828515057391	4.47312359813314	4.85575967577468	4.23372541556551	4.28944844145041	4.66837376396864	0.393866782758447	0.345420733626324	0.653728716702946
Merged-chr13-4940046-4	chr13	4939946	4940146	+	991.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-330882.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	5.20926229402815	5.03972900477238	5.24280389706015	5.48167869243733	5.60266474273566	5.82115903914084	5.5296221772086	5.20662182537188	0.513201736569422	0.0964852788058549	0.340348486057009
Merged-chr9-106476221-4	chr9	106476116	106476316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145619, intron 1 of 10)	intron (NM_145619, intron 1 of 10)	733.0	NM_001311150	235587.0	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	5.72704904750826	5.69335824449622	5.50262155660783	5.27827284541179	5.46410789898623	5.50184190923579	5.41924029949423	5.44254985968433	-0.155144517693284	0.586337577493912	0.818588624439808
Merged-chr6-115809076-4	chr6	115808960	115809160	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172086)	promoter-TSS (NM_172086)	-317.0	NM_172086	19951.0	Mm.104368	NM_172086	ENSMUSG00000057841	Rpl32	AU020185|rpL32-3A	ribosomal protein L32	protein-coding	5.09920147635874	4.89887728291266	5.13161152230608	5.09469312078995	4.94796908124159	4.95151504797772	5.04304033885576	5.09657604332477	-0.0992607324515663	0.74658831132907	0.900213602996542
Merged-chr5-130003001-4	chr5	130002904	130003104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010368)	promoter-TSS (NM_010368)	45.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	8.44363825442628	8.70187111473095	8.41374832822845	8.75854805450754	8.39045671585798	8.44026195604984	8.58700057729492	8.40828906238052	-0.173779059468334	0.288312750954641	0.600351440780517
Merged-chr2-103146297-1	chr2	103146197	103146397	+	666.5	f0_balb.idr	Intergenic	MTEb|LTR|ERVL-MaLR	72622.0	NM_019735	56369.0	Mm.24772	NM_019735	ENSMUSG00000010911	Apip	APIP2|CGI-29|Mmrp19	APAF1 interacting protein	protein-coding	3.25520834620187	3.12950464104194	3.03436103624694	3.3589731586579	2.97354109356224	2.87218554982498	2.96275308809806	2.838130987545	-1.24432883628847	0.041572696860502	0.206525892646124
Merged-chr7-81345283-4	chr7	81345192	81345392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009092)	promoter-TSS (NM_009092)	-58.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	6.94069937588376	6.95458699759986	6.59364605518714	6.28417333171361	7.00768259036598	7.19175298224894	6.91927438728444	6.84504142330057	0.404326706986214	0.0898489610170899	0.327346020178914
Merged-chr6-90538080-3	chr6	90537996	90538196	+	897.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12697.0	NM_001356412	107747.0	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	3.87294258282689	3.49213742006294	3.96155714181852	3.68271772472803	3.62499621518754	3.42578251862635	3.90051081192161	3.56369542675252	-0.356048500102917	0.477334324583355	0.753502470327085
Merged-chr1-16228432-4	chr1	16228314	16228514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025303)	TTS (NM_025303)	122532.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	7.96810636792873	7.82425605929573	7.74173260693055	7.6720166143089	7.96161234864674	7.77422614779062	7.89030732962947	7.62712594297496	0.0313058324533546	0.858475159925396	0.946576014812915
Merged-chr6-118066746-2	chr6	118066646	118066846	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362103, intron 1 of 12)	intron (NM_001362103, intron 1 of 12)	361.0	NM_001362103	70727.0	Mm.87660	NM_027526	ENSMUSG00000030134	Rasgef1a	6330404M18Rik|AI835194	RasGEF domain family, member 1A	protein-coding	3.43719449952118	3.34221362065565	3.22080179976736	3.03882799208993	2.97674944469263	3.27315467650085	3.02117459204188	3.43560354493565	-0.285006216807609	0.625675641336152	0.840044637832046
Merged-chr4-138884420-4	chr4	138884297	138884497	+	821.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6455.0	NM_012044	26970.0	Mm.296007	NM_012044	ENSMUSG00000028751	Pla2g2e	-	phospholipase A2, group IIE	protein-coding	4.16940924911295	4.43991644287934	4.1234670004636	3.64247783205658	4.00127066711233	4.34274329913886	4.10535502240046	4.25570738149226	0.15912439344445	0.729435534838558	0.892631338649919
Merged-chr1-59316856-4	chr1	59316726	59316926	+	986.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356389, intron 10 of 13)	intron (NM_001356389, intron 10 of 13)	59920.0	NM_001356389	271697.0	Mm.297713	NM_001033373	ENSMUSG00000026023	Cdk15	Als2cr7|Pftk2	cyclin-dependent kinase 15	protein-coding	5.48745368994146	5.79801310281894	4.8055165920863	5.42759598247237	4.99468976948804	5.14504964329338	4.64979177194931	5.17236895039111	-0.786547875795742	0.0297799053288032	0.166420968940793
Merged-chr2-93333626-4	chr2	93333548	93333748	+	903.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183180, intron 1 of 9)	CpG	839.0	NM_183180	241556.0	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding	4.52981884259676	4.53294930685372	4.00494914999495	4.57918186143193	4.47418267315433	4.3978471935812	4.62095177914919	4.44664816692555	0.101749045855737	0.795234725452429	0.920823289538254
Merged-chr12-73291885-3	chr12	73291785	73291985	+	874.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 2 of 15)	intron (NM_001037717, intron 2 of 15)	5037.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	4.08410731764279	4.41359389684312	4.08480752697509	4.54285606367488	2.99191344493896	3.27596219158134	3.22387347719527	3.15279764676485	-5.1608064393252	1.68497558181927e-08	8.56677692416529e-07
Merged-chr13-80862428-4	chr13	80862342	80862542	+	887.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20942.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	4.67243016977312	4.39962895351778	4.59702609603995	4.4811039912285	4.75350421780245	4.4167147401551	4.36483702498102	4.8096464158202	0.163415507802878	0.658439132036374	0.857885826893644
Merged-chr15-83113048-3	chr15	83112906	83113106	+	886.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023475, intron 9 of 11)	intron (NM_023475, intron 9 of 11)	9795.0	NM_001358061	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	3.47930215067005	3.38759797710882	3.24926071483012	2.73487234464676	3.39413654433764	3.6513935990547	3.23731964379743	3.5791541381447	0.806052584824196	0.187037199930211	0.485282006509649
Merged-chr5-137766503-2	chr5	137766403	137766603	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029805, intron 5 of 5)	B3A|SINE|B2	-12401.0	NM_001356989	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	3.10719622306375	3.21822360920181	2.98857195816743	2.5583782347734	3.09087173977107	3.03503070306774	3.03776197413355	2.92335512003517	0.145055732226484	0.823979063466695	0.932476232435989
Merged-chr9-35479681-2	chr9	35479593	35479793	+	688.333374	f0_balb.idr|f1_balb.idr	intron (NM_021339, intron 13 of 18)	intron (NM_021339, intron 13 of 18)	27617.0	NM_021339	57810.0	Mm.80509	NM_021339	ENSMUSG00000038119	Cdon	CDO|Cd0|Orcam	cell adhesion molecule-related/down-regulated by oncogenes	protein-coding	3.35518315732021	3.39209583672583	3.65485212168597	3.78962512537475	2.73391038544478	2.90639767428579	2.80191802494494	2.80639136598825	-5.07656160986463	1.05025308003746e-06	3.66450803843069e-05
Merged-chr15-79455601-4	chr15	79455505	79455705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13462.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	5.94114650743748	5.64032934303304	5.48293335653296	5.56735310903691	6.12911093079315	5.69161654657118	6.07121537741211	5.84938777395855	0.479256833285353	0.0739292514111577	0.29296208350495
Merged-chr14-103387263-1	chr14	103387163	103387363	+	630.0	f0_balb.idr	Intergenic	Intergenic	-40463.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	2.75074833433476	2.70300514393245	2.80781282787208	2.8851140693985	2.5082672632689	2.44593084310779	2.48845402966802	2.42169143849447	-1.81797986751058	0.012825892326439	0.0942141141565434
Merged-chr18-53144944-1	chr18	53144844	53145044	+	729.25	f0_c57.idr	Intergenic	B2_Mm2|SINE|B2	-31348.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	3.64248942084415	3.34587571958655	3.32300680498435	3.30498568100134	3.97441208748942	4.11800123313351	4.13487792958864	3.94493415599851	1.9416770746097	3.39790665500671e-05	0.000806997447765826
Merged-chr17-15396198-4	chr17	15396101	15396301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024203)	promoter-TSS (NM_024203)	-1.0	NM_001357822	67544.0	Mm.35039	NM_024203	ENSMUSG00000014763	Fam120b	4932442K08Rik|AW049283|AW413338|CCPG|Pgcc1|mKIAA1838	family with sequence similarity 120, member B	protein-coding	8.439957530337	8.70582933211773	8.48237740983722	8.69864034136323	8.66223292897994	8.61381193307506	8.70575666184141	8.47690332357213	0.0322007733085716	0.837141815138303	0.938189376728559
Merged-chr2-58198714-4	chr2	58198616	58198816	+	768.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34742.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	4.07097504948503	3.8640375504669	3.83240325943702	4.00629921846255	3.76656392338671	3.72084462432475	4.05333795288994	4.02475285448418	-0.149242925656866	0.736454705269421	0.895993666633144
Merged-chr6-51558526-4	chr6	51558435	51558635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 1 of 6)	intron (NM_001361577, intron 1 of 6)	13242.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	6.8636008756975	6.69522746588922	6.74124633975627	6.96036555559924	6.6441107668912	6.55368443000024	6.82996967469505	6.44578794320717	-0.284091140085073	0.178226827409911	0.473995193103051
Merged-chr7-97129456-4	chr7	97129361	97129561	+	922.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	CT-rich|Low_complexity|Low_complexity	47710.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	4.24158570938512	3.85598468134823	3.95866962004407	4.04555125805255	4.1364941185384	4.325699904958	3.88932090378296	4.43508403941903	0.455178794740062	0.288841579174799	0.600813149118904
Merged-chr15-83496102-3	chr15	83495997	83496197	+	784.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357953, intron 9 of 11)	intron (NM_001357953, intron 9 of 11)	14810.0	NM_178869	319953.0	Mm.235007	NM_178869	ENSMUSG00000022442	Ttll1	6330444E16Rik|AV014541	tubulin tyrosine ligase-like 1	protein-coding	3.48886669860531	3.61189542316967	3.37825227595996	3.53751683296619	3.12505565399245	3.23421232058788	3.6236987657451	3.4331313328454	-0.503438928957218	0.349156390571312	0.656798613189446
Merged-chr17-46153573-4	chr17	46153480	46153680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025649)	promoter-TSS (NM_025649)	-29.0	NM_025649	66591.0	Mm.272024	NM_025649	ENSMUSG00000034509	Mad2l1bp	0610009D16Rik|2510031P20Rik|AU018945|AW550977|C76045|CMT2A|CMT2B|Mad2lbp|mKIAA0110	MAD2L1 binding protein	protein-coding	6.31134005677871	6.20412833384076	6.31245712376769	6.17697696123571	6.38889276243398	6.20652722551108	6.5248356572586	5.9062834422873	0.0548024913940108	0.820526303997215	0.931234622067666
Merged-chr13-54592007-3	chr13	54591909	54592109	+	903.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347512)	TTS (NM_001347512)	1778.0	NM_025933	67044.0	Mm.29353	NM_025933	ENSMUSG00000025868	Higd2a	2010110M21Rik|AA690237	HIG1 domain family, member 2A	protein-coding	3.9261680460558	3.49950938051027	3.7870993812152	3.61530719332562	3.54233910804084	3.50257434388057	3.86458197333122	3.87949830504961	-0.00980089788016687	0.984068420159555	0.994237242628259
Merged-chr10-100031707-4	chr10	100031598	100031798	+	939.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347156, intron 1 of 8)	intron (NM_001347156, intron 1 of 8)	15877.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	4.77820900464258	4.60694637256509	5.08975208565318	5.39182853756087	5.07391598445017	4.44710891782994	5.00228811134347	4.73620127963101	-0.339507023440821	0.387790833929605	0.688635176216235
Merged-chr8-111743753-5	chr8	111743633	111743833	+	816.349976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009954, exon 1 of 7)	5' UTR (NM_009954, exon 1 of 7)	116.0	NM_009954	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	3.53011019861917	3.20052520269341	3.62334707034795	3.17715100667645	2.93343025499274	3.11475129562664	3.36342389463126	3.26220639028204	-0.805411496927977	0.171537484753488	0.46488750928509
Merged-chr17-32336104-4	chr17	32335983	32336183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017476, intron 6 of 13)	intron (NM_017476, intron 6 of 13)	14494.0	NM_017476	54194.0	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	6.23822001683553	5.57924588269318	6.27350808341061	6.40705717369322	5.32159473399364	5.45735610194156	5.85043099102977	5.78070376122581	-0.889409311057658	0.00356486455266239	0.036573002881804
Merged-chr17-12159526-4	chr17	12159420	12159620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026644, intron 2 of 8)	intron (NM_026644, intron 2 of 8)	40236.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	5.94793773196008	6.50067271941992	7.01723596135211	6.63334224962439	6.49577611844613	6.40870445945951	6.74840819403679	6.90684555608076	0.104711449379417	0.705699265351067	0.881811546028163
Merged-chr14-75015995-4	chr14	75015893	75016093	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198642)	promoter-TSS (NM_198642)	-34.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	4.80563053985315	5.11671157174692	5.03350050067965	4.80482210049976	5.22694471972767	5.33810108050534	5.07612090046273	5.38976724179158	0.611930329909288	0.0474315927153708	0.224357611502351
Merged-chr8-71610231-3	chr8	71610138	71610338	+	693.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146211)	promoter-TSS (NM_146211)	-786.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	3.20776129570469	3.23036133299115	3.20819832804285	3.044097761573	3.05900044332453	3.13831974907916	2.81372653753718	3.31343084763341	-0.307112823415261	0.601705954304973	0.827194609886311
Merged-chr2-153161771-1	chr2	153161671	153161871	+	1000.0	f0_balb.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	470.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	5.39490352574956	5.17288229937614	5.1748634715802	5.34702198361896	5.27795241973899	5.87397124596224	5.36884064859176	5.52913015157535	0.426561971407651	0.15521115029716	0.440817750658429
Merged-chr7-120833320-4	chr7	120833234	120833434	+	906.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-9497.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	4.59515242481319	4.32613014527067	3.91943226350973	4.34465189222603	4.41913609212705	4.2108827175268	4.30417710088517	4.36348651873339	0.0272066597656229	0.946752710512296	0.98095209334417
Merged-chr9-55257306-4	chr9	55257199	55257399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	intron (NM_032002, intron 3 of 7)	26326.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	6.08729040351907	5.5881793293718	5.74951069507277	5.69457614320737	5.6949096547753	5.89963727946348	5.29369940756241	5.72088667082923	-0.192811175241341	0.499159041672126	0.768207716806231
Merged-chr14-63543900-4	chr14	63543774	63543974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177594)	promoter-TSS (NM_177594)	79.0	NM_177594	210376.0	Mm.441613	NM_177594	ENSMUSG00000035078	Mtmr9	9430075G12Rik|AA516943|AF073881|LIP-STYX|MTMR8|mMTMH3	myotubularin related protein 9	protein-coding	5.89603057875498	6.19486374314465	6.44755730055659	5.77035840527171	5.33598348559752	6.02674147979671	5.46690569402383	6.10425054622214	-0.523958987350004	0.0993958328588833	0.345736960675995
Merged-chr19-40963200-4	chr19	40963100	40963300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008528, intron 4 of 16)	intron (NM_008528, intron 4 of 16)	31335.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	7.15647474476348	7.09650391267418	6.74979889628804	7.25179633285379	6.72600471372388	6.37025925247706	6.47571720441081	6.50436721290767	-0.777837024484698	0.000431619889733086	0.00684542605421376
Merged-chr8-94186831-4	chr8	94186729	94186929	+	838.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7740.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	3.86150856990374	3.78921481403259	3.90777328241676	3.62967438246929	3.79234092240933	3.66101034814186	3.59056635883109	3.71125557724851	-0.28795762246895	0.536827744721213	0.790738613941833
Merged-chr9-87027819-3	chr9	87027745	87027945	+	798.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359962, intron 2 of 14)	intron (NM_001359962, intron 2 of 14)	5816.0	NM_001359962	266690.0	Mm.30166	NM_024195	ENSMUSG00000032872	Cyb5r4	2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r	cytochrome b5 reductase 4	protein-coding	3.3357793503513	3.36512222801794	3.33620512899226	3.33793219169708	3.41392930992947	3.26106112147775	3.53290233350464	3.39072765250563	0.215551685150017	0.67156192469611	0.864854120541665
Merged-chr8-104436242-4	chr8	104436143	104436343	+	895.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013380, intron 4 of 12)	intron (NM_001013380, intron 4 of 12)	6804.0	NM_001013380	234663.0	Mm.289583	NM_001013380	ENSMUSG00000035770	Dync1li2	AA409702|C920003I06|Dncli2|Dnclic2|LIC2	dynein, cytoplasmic 1 light intermediate chain 2	protein-coding	4.84553521397122	5.05655161333601	4.97885582694575	5.04516283410418	4.44621663220412	4.57034198205877	4.55403987580119	4.43572159412225	-1.05000670254751	0.00214085363031929	0.0246615666859519
Merged-chr10-7825484-3	chr10	7825404	7825604	+	850.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6966.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	3.31364570882993	2.94364903047135	3.10130981085758	3.12263777934264	3.1379121565632	2.8793051390917	2.90579826867264	3.0996913382655	-0.444243884257758	0.456334263738186	0.739760785246887
Merged-chr13-54503748-4	chr13	54503624	54503824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176987)	promoter-TSS (NM_176987)	-81.0	NM_176987	319719.0	Mm.376151	NM_176987	ENSMUSG00000043183	Simc1	4732471D19Rik	SUMO-interacting motifs containing 1	protein-coding	5.82279856424923	6.20984021436414	6.30304357907456	6.11975309982289	6.3727700909003	6.28364361690369	6.37452680758878	6.33424923654882	0.328249749429917	0.154875841681449	0.440269481011378
Merged-chr16-57396441-4	chr16	57396355	57396555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	43178.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.15960658398563	5.85040703841618	5.93531267657572	6.24780517687468	6.08581965553669	5.6934815601444	5.6323217535188	5.95331129057849	-0.320154195439958	0.229125840123304	0.538010661957944
Merged-chr1-165731700-4	chr1	165731582	165731782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23588.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	5.54308476518068	5.48449288485426	6.0563087091694	6.15668122478341	5.62692906296883	5.50588756792056	5.841229418596	5.62341883012574	-0.33591812618883	0.260222834037735	0.571979158940553
Merged-chr15-102393708-4	chr15	102393608	102393808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12608.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	7.25402376262558	7.3588374094384	7.23365735824484	7.30989288029819	7.3530032515302	7.28474430211455	7.2296645642645	6.94903249601851	-0.10035471579902	0.593082104577385	0.822503480208742
Merged-chr4-65604990-4	chr4	65604852	65605052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161782)	promoter-TSS (NM_001161782)	-34.0	NM_053084	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	6.35806156239332	6.17109304631216	6.37689131607236	6.25822288034904	6.25836952661335	6.32298040162179	6.63894854731674	6.30001415503818	0.14472277395195	0.522890212483864	0.782230283620515
Merged-chr5-121713399-2	chr5	121713299	121713499	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	intron (NM_009125, intron 1 of 24)	1790.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	3.50954420072414	3.22401879137623	3.7488052524561	3.1035773493338	3.08257457005439	3.45885349534791	3.26913824151742	3.65627553520348	-0.113205642045929	0.846679963723535	0.941967608044389
Merged-chr13-102240218-4	chr13	102240092	102240292	+	887.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-453355.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	4.12449430811984	4.00953506086137	4.26852355730726	4.59246992899081	4.23897602002269	4.14516310765591	4.15678247652877	4.80826736241068	0.200760233788777	0.655107605741424	0.855908668668664
Merged-chr8-33271946-3	chr8	33271854	33272054	+	863.861145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011721, intron 23 of 33)	intron (NM_011721, intron 23 of 33)	113573.0	NM_001122822	22427.0	Mm.228805	NM_011721	ENSMUSG00000031583	Wrn	AI846146	Werner syndrome RecQ like helicase	protein-coding	3.85295752588684	3.92370371689856	3.79999521877474	4.18872743367853	3.8139920226984	4.02590097472862	3.9376099682871	4.04520893856434	-0.040489595104742	0.92773831525536	0.973615800862715
Merged-chr4-122991383-4	chr4	122991263	122991463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-4568.0	NM_001303121	16918.0	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	6.04681340335597	6.57881719152273	6.07039742313982	5.81947080889358	6.66863034181778	6.61153590669992	6.20546982730421	6.46457266242823	0.523846517236278	0.0502785373292051	0.232628556144769
Merged-chr10-4391970-4	chr10	4391843	4392043	+	862.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3835.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	4.14795431807732	4.29712219611446	4.14858431582564	4.14548221738126	4.01115393981661	4.07699641086061	3.98952112302403	4.00373663772731	-0.435503081281115	0.284393611696106	0.596289999025483
Merged-chr14-50905465-3	chr14	50905357	50905557	+	772.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12202.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	3.2019780672537	3.10678956121355	3.07170950044131	3.30321859607178	3.50798367055136	3.31285869270934	3.65402404327582	3.66814116496039	1.2744284274214	0.0194074648644218	0.125365635863933
Merged-chr11-98777455-4	chr11	98777348	98777548	+	878.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2071.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	3.76894615226174	4.12379095202457	4.53461495543284	3.52949298696222	4.09997211107364	4.26817519322828	4.02699875972474	4.34994330919041	0.383567237658245	0.438731569401387	0.726716801136119
Merged-chr17-30576413-4	chr17	30576316	30576516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027060)	promoter-TSS (NM_027060)	-129.0	NM_027060	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	7.39345668823416	7.55744948144625	7.45016843587227	6.77473216380026	7.03198084198853	7.05321072553736	6.94932957094779	7.12785868002387	-0.374760018733147	0.105894214248447	0.358490152395066
Merged-chr9-19622103-4	chr9	19622014	19622214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172918)	promoter-TSS (NM_172918)	23.0	NR_153375	244713.0	Mm.67366	NM_172918	ENSMUSG00000057551	Zfp317	4932416G03|D230022C05Rik|KRAB9|Zfp67|Zfp75|mszf40	zinc finger protein 317	protein-coding	9.15428242206124	9.44187626195394	9.45918051394613	9.01754652705717	9.52253744785854	9.56351939133683	9.40577967083193	9.28339085778538	0.209293651647193	0.20772670327252	0.511778028182987
Merged-chr1-172305401-1	chr1	172305301	172305501	+	713.0	f0_balb.idr	Intergenic	Intergenic	-6966.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	3.25572867337289	3.25627832463503	3.14977700424341	3.13763499144468	3.03835971883472	2.79326702337486	3.0228817840549	2.76393968559188	-1.19954985606832	0.053919928781191	0.242433618262674
Merged-chr3-79561995-4	chr3	79561902	79562102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	5677.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	6.22417400182219	6.48121907302254	6.22527366579646	6.64406615518434	6.25620460813871	6.11671705124122	6.19345007731037	6.48717713627901	-0.227535653849335	0.343392564159331	0.652082726193224
Merged-chr16-21793495-4	chr16	21793409	21793609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037957)	promoter-TSS (NR_037957)	-838.0	NR_037958	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	6.21959855212393	6.24693317235028	6.27484591465948	6.07810108682627	5.8475670593202	5.90927610048602	5.96872676988566	5.88006604678598	-0.468331015807203	0.0460269243310811	0.220245408199128
Merged-chr9-58276220-6	chr9	58276137	58276337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	23073.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	3.15189898358344	3.03608490629795	3.15233638576782	2.60450825732518	3.16245285958706	3.08040716735993	3.13968626502142	3.0925311779618	0.49955981085258	0.424668842378065	0.716342477702877
Merged-chr4-148165094-4	chr4	148165012	148165212	+	830.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_176848, exon 4 of 6)	exon (NM_176848, exon 4 of 6)	4444.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	3.63124001935644	3.75029687166926	4.04277524636584	3.67640793132527	4.12286243864001	4.12141259241557	3.73252591358944	3.90114269140969	0.579009036588199	0.204505779218301	0.507782437802491
Merged-chr8-10663948-4	chr8	10663803	10664003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	218551.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	7.1939343532536	7.06177402241188	7.27185208774385	7.5235935726386	7.1645024587033	7.09633968802634	7.47559198785729	7.35887462129924	-0.00599043670167031	0.976663772279718	0.991669126988102
Merged-chr7-125551273-4	chr7	125551178	125551378	+	965.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1004.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	5.08779898890127	4.79835699898403	4.52008172540089	4.99640025806412	4.75320978031688	4.95329660734755	4.83099783358428	5.17352102750779	0.110794087325227	0.750626183231291	0.901855648088396
Merged-chr17-34296849-3	chr17	34296756	34296956	+	920.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9011.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	4.17771600026376	4.08621673912381	3.81375935271086	3.91965782009003	4.68093129296796	4.05215601879606	4.32788534273518	4.12955765823892	0.834110364870251	0.0541246930998001	0.242924618837926
Merged-chr8-104632202-4	chr8	104632123	104632323	+	869.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019662)	promoter-TSS (NM_019662)	-902.0	NM_019662	56437.0	Mm.29467	NM_019662	ENSMUSG00000031880	Rrad	REM3|Rad	Ras-related associated with diabetes	protein-coding	3.24746379513155	3.55362904983601	4.41987883623289	3.55620468160534	3.77780405098193	3.70110213062741	3.73168284928345	3.74536927581637	-0.0924829223063351	0.872716562342502	0.952272557441005
Merged-chr4-45487952-4	chr4	45487839	45488039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 2 of 5)	intron (NM_001033306, intron 2 of 5)	42889.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	7.11032201977564	6.76025365592986	7.38164992836635	7.4798560746491	6.96168443524392	6.88116058173113	7.13251970238685	7.02235318230988	-0.301170554289946	0.182458486413173	0.478985491052713
Merged-chr4-43466137-4	chr4	43466035	43466235	+	972.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11509.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	5.75357786761848	5.41277117528021	6.09833992915783	6.35073928002897	5.29277918165102	5.1653583641896	5.31959541941219	5.05776626780499	-1.28004832525417	8.91505703240141e-05	0.00184359338904503
Merged-chr17-43267609-3	chr17	43267496	43267696	+	701.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2751.0	NM_133776	77596.0	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	3.58329174670727	3.79547095991022	3.36091319550681	3.39106158830693	3.30664317040695	3.41213802735768	3.46361164329947	3.58171892280761	-0.334687944690028	0.519717740131999	0.780280082524181
Merged-chr16-11134713-4	chr16	11134592	11134792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029582)	promoter-TSS (NM_029582)	-160.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	9.1751606953861	9.34662510650759	9.28893698627938	9.07739145724694	9.25529705365695	9.35137615307783	9.38317502908567	9.23293416854598	0.102341514834721	0.475221444120849	0.75213544062166
Merged-chr9-123480744-4	chr9	123480647	123480847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013860, intron 1 of 7)	intron (NM_013860, intron 1 of 7)	2046.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	7.10814940506818	7.2938443338229	6.87018660646208	6.74304630063955	6.92083537116757	6.94671421666352	7.12942943270141	7.00922562246958	-0.0148449669367707	0.944708374340322	0.980135813539954
Merged-chr5-48331629-3	chr5	48331525	48331725	+	984.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40767.0	NM_025755	66768.0	Mm.29409	NM_025755	ENSMUSG00000029089	Pacrgl	4933428G09Rik	PARK2 co-regulated-like	protein-coding	4.65758602296661	4.44243196964616	5.14817149091914	5.0151669972076	3.75045483389459	3.91891707028007	3.90330615865444	3.85396757466918	-2.55732980352052	2.42829772227411e-08	1.19367267661429e-06
Merged-chr1-87637678-4	chr1	87637569	87637769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	MLT1M|LTR|ERVL-MaLR	17357.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	6.24563204359808	6.39959060899254	6.48717113791003	6.30917613027343	6.42736276060208	6.93353640953492	6.68303113152163	6.57964976977568	0.437422158052313	0.0515368527415329	0.235860711199741
Merged-chr11-68521568-4	chr11	68521472	68521672	+	974.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004435, intron 2 of 19)	intron (NM_001004435, intron 2 of 19)	18553.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	5.5985963159103	5.5035219808291	5.36278910554955	5.34054336378068	5.24928268790887	5.35190013065227	4.89416391464722	5.26915277356879	-0.443963349701185	0.136305880681513	0.410810699116291
Merged-chr7-19269121-1	chr7	19269021	19269221	+	785.0	f0_c57.idr	intron (NM_009499, intron 1 of 12)	MIR|SINE|MIR	2733.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	3.90629237808243	4.25618543851012	3.85263587859775	3.66460620956847	4.17899704462768	4.3185413504595	4.17257520752221	3.90461587089751	0.587027290173478	0.190707079518803	0.490119122366727
Merged-chr2-126496464-4	chr2	126496350	126496550	+	885.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 1 of 27)	intron (NM_001359975, intron 1 of 27)	3397.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	4.06730126924996	4.23299888107323	4.06790983296637	4.27837319422468	4.14438763811937	3.4548231113254	3.90334822591137	4.23988134619305	-0.509220648268267	0.295428237445084	0.607396411491466
Merged-chr11-100369967-4	chr11	100369868	100370068	+	968.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010593, exon 14 of 14)	3' UTR (NM_010593, exon 14 of 14)	-13827.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	5.8318174747295	5.92573343713877	5.48248420840655	5.55107505347469	5.39794053913565	5.65837356066934	5.68948011847725	5.15268992741942	-0.370359091581539	0.209378714293289	0.513940748725158
Merged-chr3-28026341-4	chr3	28026224	28026424	+	693.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 3 of 25)	RMER10A|LTR|ERVL	42153.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	3.69288088331829	3.45887858636913	3.79545042952028	3.54866506518136	3.98107340804652	3.57764559646714	3.72989922824717	3.93213635763696	0.59935700893542	0.206354396719169	0.510269223695456
Merged-chr15-96699057-4	chr15	96698935	96699135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355633, intron 1 of 14)	CpG	693.0	NM_001355633	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	6.73509338667825	6.98910074349523	6.41157158989678	6.46688469612041	6.47744138045573	6.88345505819148	6.32226491404011	6.95359898320782	0.018233857999479	0.943079618508445	0.97939909270739
Merged-chr5-122502994-4	chr5	122502906	122503106	+	914.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009722)	promoter-TSS (NM_009722)	-781.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	4.41093786952829	3.95586209187568	4.12029543125983	4.20852440830289	4.27656960590346	3.98416760085687	3.79015462774062	4.29219608775901	-0.187099042209608	0.670167090177381	0.863913056210805
Merged-chr17-32738651-4	chr17	32738551	32738751	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	48896.0	NM_001346705	208292.0	Mm.38813	NM_172458	ENSMUSG00000024298	Zfp871	4732483N19|9030612M13Rik|AI118577|AI265322|mKIAA3006	zinc finger protein 871	protein-coding	4.9914459127258	5.09423692258641	5.19472334356731	5.0457459432543	5.19540211607632	5.39813782641937	4.9316631358765	5.41853387229691	0.31019354292587	0.312286754843281	0.624213954591124
Merged-chr3-27938587-4	chr3	27938512	27938712	+	777.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164056)	promoter-TSS (NM_001164056)	-68.0	NM_001164056	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	4.03089895751871	3.91161120901122	3.88203673808456	4.14199141538618	3.62171929443554	4.00389959352513	4.18744213742858	4.16266553868343	0.0049473327419252	0.991349617687644	0.996745793587504
Merged-chr11-16956681-4	chr11	16956557	16956757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5247.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	7.59472300482177	7.8339583803856	7.79389549416948	7.90717613771509	7.78430251974758	7.64187757843925	7.7330460200096	7.56372668448175	-0.140479878060624	0.415546879356922	0.709797021974572
Merged-chr5-23999708-2	chr5	23999606	23999806	+	950.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001310471, intron 2 of 10)	intron (NM_001310471, intron 2 of 10)	30606.0	NM_001310471	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	3.48521600227336	3.5314545858172	3.91302772461257	3.94952769637956	3.60295832432318	3.66418401553184	4.02350599879621	3.81643045213793	0.109208077638355	0.826919243106013	0.933592020200304
Merged-chr15-57883934-3	chr15	57883837	57884037	+	930.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024207, intron 1 of 7)	intron (NM_024207, intron 1 of 7)	8481.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	3.26859692955862	3.64637133599043	3.3336823457887	3.64079162430801	3.46519948672245	3.50944427457865	3.78805318740587	3.61478285558484	0.329765821279243	0.525275535191265	0.783229855070132
Merged-chr11-21009704-4	chr11	21009588	21009788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81636.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	5.91112415558431	5.93221014020348	6.01947276966374	5.85300101087535	5.7563173941211	5.75882718646986	6.06777872321731	5.79063929690927	-0.123358552048877	0.618671521059292	0.836039000482598
Merged-chr13-23555094-4	chr13	23555004	23555204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145713)	promoter-TSS (NM_145713)	72.0	NM_145713	14957.0	Mm.247046	NM_145713	ENSMUSG00000052565	Hist1h1d	H1.3|H1D|H1f3|H1s-4	histone cluster 1, H1d	protein-coding	5.40936055388781	5.38569054426486	5.6548649403097	4.90355007899795	4.93810830451929	5.58790742129599	6.07456041037223	5.97532722360834	0.604397185348549	0.102880016220367	0.352197800815195
Merged-chr13-64364421-4	chr13	64364328	64364528	+	877.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009984, intron 7 of 7)	B4A|SINE|B4	6092.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	4.34753366359586	4.35833490285409	4.03306983454457	4.15283205435413	4.30876942853534	4.55573398187375	3.67345297629982	3.74845575460048	-0.252541221478629	0.606016136231365	0.829291552501708
Merged-chr12-76765650-4	chr12	76765548	76765748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154884, intron 1 of 2)	CpG	110.0	NM_206534	211151.0	Mm.80970	NM_206534	ENSMUSG00000090258	Churc1	1700030P15Rik|My015|chch	churchill domain containing 1	protein-coding	7.15191127179993	7.05984547738201	7.53433054697893	6.9127912291022	7.1821571887651	7.30696945426173	6.97251326209379	7.13665535670309	-0.0265253121461527	0.902032288141246	0.963659775325421
Merged-chr9-121572054-4	chr9	121571956	121572156	+	854.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14964.0	NR_040740	75384.0	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	4.34637030597429	4.6880559446265	4.39130463883231	4.31920804264678	4.10586541478047	4.56430237091062	4.53299499590051	4.43126966150666	-0.0704697466228845	0.857893765654194	0.946450198321422
Merged-chr7-4966718-3	chr7	4966614	4966814	+	679.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001200041, exon 4 of 4)	3' UTR (NM_001200041, exon 4 of 4)	-2366.0	NM_001146329	381836.0	Mm.297829	NM_001146329	ENSMUSG00000030433	Sbk2	Gm1079|Sgk069	SH3-binding domain kinase family, member 2	protein-coding	3.3770287382285	3.90471893622071	3.48389228507665	2.84191105055623	3.15652737425749	2.86940570445171	3.41689850305609	3.13347490143183	-1.07802288105384	0.112651825076063	0.371152547381804
Merged-chr14-75863936-4	chr14	75863818	75864018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15995.0	NR_028481	100303751.0	Mm.484707	NR_028481	ENSMUSG00000065147	Snora31	MBI-161	small nucleolar RNA, H/ACA box 31	snoRNA	6.92052199259976	6.78251749815641	6.85482067900286	7.12032218461502	6.82769945552485	6.61368688244755	6.93754738663471	7.17478851281956	-0.0440034857723918	0.83903929736986	0.938856878340637
Merged-chr13-23911519-3	chr13	23911420	23911620	+	936.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177016, intron 1 of 11)	Lx8b|LINE|L1	3487.0	NM_177016	319848.0	Mm.97959	NM_177016	ENSMUSG00000021336	Slc17a4	9130214H05Rik	solute carrier family 17 (sodium phosphate), member 4	protein-coding	4.30082000790877	4.36940373657837	3.77814978869215	4.28350092268205	3.89402088090447	4.00932624503313	4.02482600136041	3.99045606585514	-0.618961741127737	0.158503002462824	0.445421659453645
Merged-chr19-42130863-4	chr19	42130796	42130996	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1903.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	6.13933435173592	6.16653991976215	6.15867373060757	6.25039558011695	5.36306124423904	5.65917489442962	5.48195515458083	5.1233378340459	-1.2664085615358	1.60201214176871e-06	5.36609987006847e-05
Merged-chr7-141559826-4	chr7	141559761	141559961	+	800.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-2319.0	NM_001357068	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	3.47087982652504	3.58161517097388	3.47132216552102	3.46938005924239	3.6197549631007	3.64282387355151	3.51389516269688	3.68036963172827	0.381941077781681	0.422014441076619	0.714404497381328
Merged-chr2-131530735-4	chr2	131530643	131530843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	31542.0	NM_013460	11550.0	Mm.389380	NM_013460	ENSMUSG00000027335	Adra1d	Adra-1|Adra1|Adra1a|Gpcr8|Spr8|[a]1d|alpha1D-AR	adrenergic receptor, alpha 1d	protein-coding	5.03423591171227	5.07430981818644	5.10377403945279	5.17151720995915	5.15554483792399	5.27761240212394	5.23517877678022	5.31519257572633	0.257716182895844	0.378047569707872	0.680673057046939
Merged-chr9-95857630-4	chr9	95857521	95857721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019864)	promoter-TSS (NM_019864)	24.0	NM_019864	245000.0	Mm.212462	NM_019864	ENSMUSG00000032409	Atr	-	ataxia telangiectasia and Rad3 related	protein-coding	7.41690758560213	7.65707896782337	7.35635928790395	7.11123139016223	7.91001806770076	7.88175325778623	7.54989502793487	7.83541447255194	0.543699846753799	0.00613540974176392	0.0551752785861041
Merged-chr11-22632500-1	chr11	22632400	22632600	+	555.0	f0_balb.idr	Intergenic	Intergenic	120217.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	3.19871776268996	2.98267901803904	3.25360778300924	3.19771546047543	2.94685103475075	3.19274572321201	3.07185387444941	3.08122067237968	-0.368389531896063	0.517524522707203	0.778934386631695
Merged-chr13-33935783-5	chr13	33935709	33935909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040707)	promoter-TSS (NR_040707)	-223.0	NR_040707	68808.0	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	5.26806773617925	4.86745707441093	5.33175967849477	4.84462089010405	5.66930550147055	5.4143319730447	5.82154449274334	5.84765600282891	1.1058666250059	0.00026864132677166	0.00463471804557358
Merged-chr7-135710467-4	chr7	135710376	135710576	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081117, intron 4 of 13)	intron (NM_001081117, intron 4 of 13)	5903.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	5.08798187875534	5.22274171739308	4.66447960479171	4.88710200009933	5.32261954391552	5.22922045676728	5.06397149993988	5.11778004635882	0.404766025946217	0.206992096680591	0.511049184276
Merged-chr14-120307105-4	chr14	120306948	120307148	+	923.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 1 of 8)	intron (NM_001360376, intron 1 of 8)	596.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	3.56172621610099	3.97104340415174	3.67456078555966	3.32054745888013	3.73286643661272	4.042421137817	3.7617378566176	3.43785333185284	0.333051300353887	0.523576008312211	0.782538566597826
Merged-chr7-90362918-3	chr7	90362830	90363030	+	661.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040085, intron 4 of 18)	intron (NM_001040085, intron 4 of 18)	-24051.0	NM_001040087	83671.0	Mm.26751	NM_031394	ENSMUSG00000030616	Sytl2	AI266830|Slp2|mKIAA1597	synaptotagmin-like 2	protein-coding	3.2941449878139	3.53231153678022	3.3978649840174	3.3080533761577	2.90414472724135	2.79894057347779	2.98388310903033	3.1205940173945	-1.80679107990277	0.00360851726177102	0.0369303594788784
Merged-chr3-121968008-6	chr3	121967921	121968121	+	993.8095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356524, intron 1 of 22)	intron (NM_001356524, intron 1 of 22)	215.0	NM_001356524	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	4.32673443059468	3.94025001595564	4.61968371754144	4.07016567623369	3.91463214619139	4.27782891226808	4.08530908264813	4.19487320943513	-0.343433211301334	0.436561493065577	0.725186775580137
Merged-chr19-46483129-4	chr19	46483041	46483241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 10 of 11)	intron (NM_001025391, intron 10 of 11)	-18507.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	6.21954259814235	6.10939222685464	6.14243368612295	6.37759072073282	6.29334011858332	6.00116520511132	6.16982525803436	5.91849186646435	-0.173255778022368	0.47110566628827	0.749705558503237
Merged-chr4-141952347-4	chr4	141952254	141952454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 12 of 31)	intron (NM_177868, intron 12 of 31)	-30638.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	8.30216250621257	8.50462656371247	8.24032389628591	8.15491095293995	8.16696687624891	8.52530298761095	8.41199095539635	8.36881253181756	0.0837752990695307	0.621380160847739	0.837817401999985
Merged-chr16-16473553-3	chr16	16473467	16473667	+	756.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 7 of 16)	RLTR10D2|LTR|ERVK	53844.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	3.82335277082268	3.83666321463874	3.91819095680716	3.70539361173959	3.51317104332648	3.7292354009023	3.85509384890364	3.66602609045755	-0.380247352331459	0.414118514512583	0.708945638185847
Merged-chr11-22860526-4	chr11	22860430	22860630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001169114)	promoter-TSS (NM_001169114)	-194.0	NM_001169114	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	5.21812355207404	5.24359387231012	5.12841651201588	4.90702262517314	4.92658682925425	5.269173734256	4.70530595535623	4.80667913823641	-0.34801629003092	0.298494804949694	0.61062111572106
Merged-chr13-99306382-4	chr13	99306280	99306480	+	885.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38298.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	4.42726960053664	4.51212730693606	4.24901217203422	4.70282025775014	4.41390993405663	4.46961536643832	4.27753964859789	4.24648797636101	-0.334623901165295	0.387249783811725	0.688139428549813
Merged-chr5-122219196-4	chr5	122219079	122219279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359454, intron 3 of 7)	intron (NM_001359454, intron 3 of 7)	8892.0	NM_028752	74096.0	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	5.97663804871837	6.65559912169645	6.30304199419881	5.54434206456363	5.87560815281975	5.6580607819189	5.96846994312411	5.53505474938242	-0.639807821379691	0.0490711308293737	0.229008262608444
Merged-chr1-118321799-4	chr1	118321731	118321931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026472)	promoter-TSS (NM_026472)	-12.0	NM_026472	67949.0	Mm.280311	NM_026472	ENSMUSG00000026377	Nifk	AI852665|C130020J04Rik|Mki67ip	nucleolar protein interacting with the FHA domain of MKI67	protein-coding	7.35417021472986	7.31746569249942	6.88486125088001	7.53584131301644	7.08985062658995	7.25973404959941	7.18481800258308	6.97606328061246	-0.240107910859451	0.256777992115377	0.568480006866985
Merged-chr2-165889012-4	chr2	165888928	165889128	+	915.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-4190.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	4.3885723591677	4.16397000816086	4.11604931905212	3.93189271346942	4.49805131996983	4.34124924300818	4.1478728792734	4.6445968046544	0.675173369368736	0.0970014338225171	0.341195684602432
Merged-chr2-139591438-3	chr2	139591330	139591530	+	863.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356507, intron 8 of 11)	intron (NM_001356507, intron 8 of 11)	-86748.0	NM_001276489	319909.0	Mm.41113	NM_001126490	ENSMUSG00000074766	Ism1	5430433G21Rik|Ism	isthmin 1, angiogenesis inhibitor	protein-coding	3.157408552249	3.3341654897027	3.15778833703114	3.37281411803062	3.01950991783725	3.13962469756202	3.36348787972499	3.15625239862725	-0.367522574846605	0.5119128957195	0.775668292015302
Merged-chr12-8637143-4	chr12	8637034	8637234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37000.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	7.57237680836392	8.1435677710811	7.34855824519973	7.6694792644056	7.61767474314558	7.61914705578665	7.61432273615422	7.55042201605214	-0.158207866171292	0.45266612483091	0.736937759721328
Merged-chr13-113600141-4	chr13	113600024	113600224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	18440.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	5.52119915890898	5.7023868506103	5.57709159329842	5.93414450038079	5.50557051813499	5.61123985062774	5.43755664784574	5.59974966470073	-0.298198545451219	0.277702392977187	0.589730253288477
Merged-chr11-69258596-4	chr11	69258554	69258754	+	842.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-21632.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	3.51800460900916	3.23874849403067	3.34807147932257	3.32535203732	3.68574950697263	3.46185951961633	3.60521201715892	3.56856153567725	0.771639319840087	0.119259382986076	0.382084152746363
Merged-chr11-98457907-4	chr11	98457783	98457983	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	11049.0	NM_010346	14786.0	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	4.55518544343699	4.55005206901503	4.25584071521917	4.19127026293272	4.6975366539395	4.5225628160627	4.32969598892136	4.3006094050191	0.215733196464064	0.581302822826979	0.816250490738031
Merged-chr13-30582731-4	chr13	30582622	30582822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32321.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	6.74225021660895	6.09023810043412	6.19567006591086	6.59288905699327	5.67593709432393	5.8203972410008	6.25787188937709	6.15134489677651	-0.680347454617046	0.0147653196679065	0.103647010714193
Merged-chr9-106258010-2	chr9	106257910	106258110	+	913.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	MLT2C1|LTR|ERVL	-10056.0	NM_020559	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	3.4759169561047	3.28338815284257	3.47636766406925	2.65207661599663	4.95249774642188	4.70254429182698	4.76241291443457	4.75501058325506	5.39098424380201	1.23874408480613e-18	3.48508162894923e-16
Merged-chr14-33202339-4	chr14	33202251	33202451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14472.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	6.31978150234904	6.45733678590693	6.26460479137891	6.5570064217836	6.20261258588582	5.98830745974905	6.458952364822	6.38766616541802	-0.216152652962117	0.356486337017929	0.662883007207157
Merged-chr14-118132798-4	chr14	118132688	118132888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029578)	promoter-TSS (NM_029578)	-23.0	NM_029578	76355.0	Mm.251537	NM_029578	ENSMUSG00000022130	Tgds	2610017J16Rik|2610025M23Rik|AI648925	TDP-glucose 4,6-dehydratase	protein-coding	6.97518040778507	7.08681598087479	6.97639752120745	7.11989776971352	7.23728443806327	7.26466273751795	7.1653680367585	6.9049114016789	0.144673016318183	0.450817229755166	0.735530015684777
Merged-chr7-96213120-1	chr7	96213020	96213220	+	582.0	f0_balb.idr	intron (NM_001310760, intron 1 of 32)	intron (NM_001310760, intron 1 of 32)	1449.0	NM_001310760	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	3.12441574570042	3.01193536611044	3.23140671520569	3.29418249619199	2.84123420349337	2.91809401459898	2.73271376030533	3.00699042349094	-1.30508608598395	0.035765006496272	0.18784809602997
Merged-chr11-116622918-2	chr11	116622817	116623017	+	731.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	1335.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	3.34887403162175	3.50641266385728	3.28972602834563	3.1412567701089	3.58475467608915	3.52114644022094	3.216536229589	3.51115078733584	0.517145498382189	0.327392267383687	0.638958465633063
Merged-chr2-11496886-4	chr2	11496778	11496978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	MTEb|LTR|ERVL-MaLR	5212.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	6.88012403610412	7.44087543562098	7.91016632556919	7.72950597643734	7.49513376662202	6.7619408283037	7.46599791724569	7.51596650679536	-0.266499255138317	0.322367432968717	0.633942634212845
Merged-chr7-7121039-4	chr7	7120930	7121130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172738, intron 1 of 4)	intron (NM_172738, intron 1 of 4)	446.0	NM_172738	232853.0	Mm.23838	NM_172738	ENSMUSG00000062116	Zfp954	5730403M16Rik|8030437F07|AA123315	zinc finger protein 954	protein-coding	6.47169625340861	6.49638512030919	6.40190539401326	6.81695328168348	6.63601042739179	6.66624252521887	6.60061058098179	6.45086698330691	0.0228930951882019	0.918023189107157	0.969796661202263
Merged-chr14-60444367-4	chr14	60444276	60444476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	66090.0	NM_001164705	72125.0	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	6.39165585407528	6.55214095407724	6.24563072948514	6.184185102032	6.35792894609657	6.4971637659179	5.88303601108255	6.53532712202492	-0.00529718094669513	0.983168213378053	0.99395664486631
Merged-chr19-10940586-3	chr19	10940494	10940694	+	787.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023731)	TTS (NM_023731)	3434.0	NM_009962	14764.0	Mm.470721	NM_009962	ENSMUSG00000034117	Ptgdr2	Crth2|Gpr44|Grp45	prostaglandin D2 receptor 2	protein-coding	3.28665394173521	3.50690619011546	3.34747305718517	2.9712180045844	3.48256314136963	3.57762548916466	3.27520483569663	3.65834959038786	0.7702746728712	0.16106853474928	0.449648869863867
Merged-chr11-85811374-4	chr11	85811306	85811506	+	905.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	20982.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	4.47363645979922	3.88961128198976	4.19034368596104	4.25652081868679	4.19169633949065	3.68348759780833	4.07845941436903	4.57552779622687	-0.111581588491734	0.814264768356421	0.928327532350968
Merged-chr11-50291612-4	chr11	50291488	50291688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	748.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	4.24321045538123	4.39373969715522	4.43049881163193	4.38336588419104	4.55490793673388	4.87218393614839	4.36676030440987	4.66474301738929	0.575892125043241	0.119458875455582	0.38243202687831
Merged-chr8-111570643-3	chr8	111570542	111570742	+	901.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	L1MEd|LINE|L1	32299.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	4.23931943844172	4.3726409391812	3.86509918756546	3.32392234364738	4.05651643214712	4.36932588524929	3.79430720660143	3.74991733064244	0.00190077350861198	0.997214243436543	0.998908860902246
Merged-chr5-14049226-3	chr5	14049131	14049331	+	949.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011348, intron 1 of 16)	L3|LINE|CR1	23955.0	NM_011348	20349.0	Mm.134093	NM_011348	ENSMUSG00000063531	Sema3e	6430702L12|AA408817|Semah|mKIAA0331	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	protein-coding	3.70320955002253	3.61637622162883	3.46915565033051	3.62334032963117	3.1291396901941	3.08325612502331	3.03710901515056	2.97189155136132	-2.16602337710104	0.000307745583082694	0.00517849240147591
Merged-chr14-21995692-3	chr14	21995593	21995793	+	872.64447	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6092.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	3.74537621868403	3.69029097333297	4.01868650598582	3.77481782955716	3.64138745398352	3.70068684671691	3.57051450333183	3.58200116689363	-0.567639479244929	0.227389807994265	0.536081715130624
Merged-chr17-24220793-4	chr17	24220694	24220894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028056)	promoter-TSS (NM_028056)	57.0	NM_028056	72016.0	Mm.23881	NM_028056	ENSMUSG00000024118	Tedc2	1600002H07Rik	tubulin epsilon and delta complex 2	protein-coding	7.70273141352436	7.5913929233692	7.05450477872691	7.51799477564632	7.31626444871867	7.20653871419472	7.47662392658802	7.11238431923104	-0.274145080996465	0.190309332437033	0.489452447654893
Merged-chr19-16132556-4	chr19	16132459	16132659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008139)	promoter-TSS (NM_008139)	-272.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	7.71317804321613	7.72218264520849	7.67366894919	7.77577389794085	7.64498657635907	7.60445458838771	7.89650158181031	7.27165137856129	-0.130219597544225	0.491257080483841	0.762892718048638
Merged-chr18-25472591-4	chr18	25472483	25472683	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	207165.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	5.46914045915123	5.50307714480259	5.47008479018173	5.58026725980952	5.99498010386443	5.36035154164698	5.76837064574078	5.31365180462289	0.24902729695711	0.403856282696472	0.701055661546487
Merged-chr10-25365343-2	chr10	25365243	25365443	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	5545.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	3.08823267132677	2.98134564356644	2.82984972283557	2.9004350160251	3.06562406375365	3.07497305260305	3.07695610632182	3.35067531278549	0.798364443943572	0.165010575325785	0.45540257225831
Merged-chr7-118704432-4	chr7	118704386	118704586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019580, intron 1 of 5)	intron (NM_019580, intron 1 of 5)	1252.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	4.66623820748315	4.51158496114095	5.29383120232264	4.58517312149744	5.8519312512302	5.88935991555521	5.77176802501325	5.83912104963414	1.89398255778321	2.75543228510652e-09	1.63168814161062e-07
Merged-chr4-8804107-3	chr4	8804018	8804218	+	965.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 3 of 36)	intron (NM_001355382, intron 3 of 36)	52794.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	5.05908823060579	4.41765328664079	5.05998720677175	5.32147795870955	4.15789381261482	4.21491069855052	3.94410790155939	4.65821026514681	-1.64032716023396	0.000208657397959971	0.00377050645579912
Merged-chr9-31151304-3	chr9	31151220	31151420	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357698, intron 17 of 17)	intron (NM_001357698, intron 17 of 17)	-19521.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	3.27184646592766	3.05160434777847	2.85266302525644	3.05276960204299	3.05302952270252	3.09560871541697	3.03855039428393	3.16397039705556	0.0933977039814463	0.871203586260457	0.951579960696581
Merged-chr8-18564815-4	chr8	18564715	18564915	+	991.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30316.0	NM_173189	244329.0	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge	microcephaly, primary autosomal recessive 1	protein-coding	5.74894491290377	5.31424835392446	5.67843382948362	6.20600087284198	4.92171624588354	5.55275992298379	5.28487037208155	5.67437611140909	-0.697952766718902	0.0429743531728478	0.210913016926852
Merged-chr14-26455077-4	chr14	26454983	26455183	+	962.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 12 of 22)	intron (NM_001310445, intron 12 of 22)	79541.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	5.3174254344247	4.96497868088019	4.98250601991157	5.47500760961479	4.60920126893516	5.22416998360216	4.99245415776132	4.42171999552252	-0.721718141318199	0.0546509997607703	0.244116944585621
Merged-chr19-37435894-4	chr19	37435810	37436010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008245, intron 1 of 3)	intron (NM_008245, intron 1 of 3)	1069.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	5.39243746564139	5.22042343172904	5.24325747324174	5.7720572713529	5.1239658594323	5.50917660192701	5.30889976972291	5.03291079824227	-0.353610436146702	0.271691111804616	0.583281843628624
Merged-chr1-161500953-4	chr1	161500849	161501049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183391, intron 2 of 2)	intron (NM_183391, intron 2 of 2)	6292.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	7.15411601941317	6.80028400200653	7.09789200790335	7.00583492700196	7.23552004567581	7.21441955959086	7.06218663782764	7.10460241818592	0.194552066584005	0.309644796244249	0.621833440934041
Merged-chr15-5495659-4	chr15	5495554	5495754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045274)	promoter-TSS (NR_045274)	-664.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	6.01069281325046	6.25929396767665	6.2204508687114	6.04269832697783	6.38101332310066	6.27551440912685	6.12988516946315	6.32633666928474	0.234690159928357	0.30408402081348	0.616772476490545
Merged-chr11-26604443-4	chr11	26604334	26604534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-10514.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	6.68051112869163	6.39337959089386	6.01378875912197	6.6775538311637	6.84009222579477	6.84289574520078	6.94784697552718	6.56865463930388	0.468895644469596	0.052561075930092	0.238874015044567
Merged-chr17-25985255-1	chr17	25985155	25985355	+	637.333313	f0_balb.idr	intron (NM_001347334, intron 1 of 11)	CpG	541.0	NR_151779	50817.0	Mm.216072	NM_015830	ENSMUSG00000037326	Capn15	Solh	calpain 15	protein-coding	3.68896146690567	3.98116034681431	3.83960907655169	3.52148874356698	3.69260727554174	3.75325294565698	3.50703809376063	3.68739824944664	-0.295849991957064	0.542233108257405	0.793691778334718
Merged-chr1-138822466-4	chr1	138822371	138822571	+	905.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	19973.0	NM_001042577	16876.0	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	4.3409072047824	4.08226943071087	4.42533976760687	4.50459481408993	4.37448510713926	4.42492544262195	4.3642801071621	4.20215233314953	-0.0304826907783471	0.937800784240405	0.977460307804652
Merged-chr10-84390509-4	chr10	84390433	84390633	+	949.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 4 of 6)	intron (NM_001004363, intron 4 of 6)	49938.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	5.0262984424223	4.82288020127027	4.96571388109897	4.44120629719246	4.79895451085337	4.6939844571828	4.66247638625112	4.3216791036361	-0.383155954469805	0.317104994998639	0.628948589894739
Merged-chr9-65536276-4	chr9	65536172	65536372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43815.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	8.15989309384038	8.14384696468347	7.70019421514652	7.77120769295487	8.06811834580434	8.02333722378745	8.08039603808287	7.90007985308862	0.0833848417663732	0.650134860040852	0.85306006236009
Merged-chr12-24650594-1	chr12	24650494	24650694	+	846.8333130000001	f1_balb.idr	promoter-TSS (NM_178357)	promoter-TSS (NM_178357)	-777.0	NM_178357	194655.0	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	3.70808331635696	4.00207718451515	3.65003045193208	4.22481113008359	4.0080378363488	4.18143324289922	3.6368873007714	3.76258330140049	-0.0476327828559862	0.923723504775348	0.971863340184091
Merged-chr18-77868585-4	chr18	77868460	77868660	+	980.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 6 of 14)	ID2|SINE|ID	-69907.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	3.93552333321839	4.48591872554027	4.04267766389251	3.77013892335095	4.57206500637125	3.81671207922332	4.07525600954283	4.60919018754689	0.564987123162176	0.246640547136374	0.557852796460755
Merged-chr6-149188775-4	chr6	149188667	149188867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113424)	promoter-TSS (NM_001113424)	-55.0	NM_001113424	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	8.72383012848431	8.76474224464418	8.75493772377957	8.99679297974644	9.03956026122196	8.88113127495714	8.95166641118749	8.66262871332686	0.0919182479080546	0.568042058479575	0.808443301698143
Merged-chr6-83033580-4	chr6	83033476	83033676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291799)	promoter-TSS (NM_001291799)	-105.0	NM_001291799	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	6.91023648658584	6.74350093056564	6.78036287822399	6.25915403780927	6.53367829535331	6.79474025316466	6.52023321931311	6.74760190128189	-0.0412147018163022	0.863445327144962	0.948591391532472
Merged-chr11-29692233-4	chr11	29692115	29692315	+	990.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194053)	promoter-TSS (NM_194053)	-683.0	NM_194053	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	6.62088242909296	6.35921874568566	6.53532094736893	6.23263793217345	5.81625027865794	6.42656836533907	5.411541117504	6.06471656661959	-0.709135146181235	0.0144312844077513	0.102036792774345
Merged-chr9-38724216-4	chr9	38724115	38724315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145957, intron 6 of 18)	intron (NM_001145957, intron 6 of 18)	5947.0	NM_172767	67776.0	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	5.19592406007232	4.99029120429019	5.09737625618339	5.39900526376685	5.41513362460642	5.09114490290198	5.10644192446051	5.5269197621597	0.20072796991442	0.524020002142519	0.782704938068323
Merged-chr3-55829018-4	chr3	55828919	55829119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 38 of 57)	intron (NM_030595, intron 38 of 57)	-18086.0	NR_033592	71182.0	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo	5.96178506860267	6.31536297485948	6.14422690341242	6.68706966094404	6.26568489284711	6.21208665415317	6.62373854850281	6.43927605037034	0.0969383912216489	0.71465548838913	0.885963198551795
Merged-chr14-60916849-3	chr14	60916769	60916969	+	856.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	121118.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	3.77568263645459	3.58710149838118	3.97340241681252	4.24412426820922	3.37922712559506	3.89691568297793	4.00004580489725	3.82617769536814	-0.388716796288006	0.454779359020221	0.73853528314892
Merged-chr11-23822724-2	chr11	23822624	23822824	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51754.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	3.07160497983396	2.91900889117081	3.13521983932895	3.16378842868733	3.06466957341923	3.18345832403301	3.34712609909305	3.59477037168961	0.858039991063285	0.136459260908799	0.410990361962696
Merged-chr6-83653337-8	chr6	83653227	83653427	+	949.0083619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 3 of 6)	intron (NM_016751, intron 3 of 6)	2789.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	3.24029646130222	3.02154217197179	3.80666358791027	3.57088350416445	3.18283430830064	3.41825291506951	3.5143289236196	3.5271412461771	-0.100923739131397	0.863837306920993	0.948857968722629
Merged-chr15-86205493-4	chr15	86205383	86205583	+	920.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-8976.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	4.13678005847845	4.69097648455661	4.52348193629807	4.54320364920812	4.79295771627326	4.65491855655784	4.69446181185636	4.56167722125655	0.407537403314846	0.269079576644068	0.580620459637407
Merged-chr4-148676803-4	chr4	148676702	148676902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33485.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	5.70185722116837	6.08383130332367	5.61996765719647	5.74735662503673	5.9099762497124	6.12054815181457	6.25876395138353	5.87342567447003	0.387215552198557	0.138974184071142	0.414552151873265
Merged-chr19-6418686-4	chr19	6418602	6418802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205235)	promoter-TSS (NM_001205235)	-36.0	NM_001205235	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	5.78369485973422	5.71450166800808	5.52614187843273	5.48753229721396	5.71877972876599	5.61454273920754	5.75528881012957	5.89228185382509	0.210155709553004	0.422500280747737	0.714750979996272
Merged-chr7-16398574-4	chr7	16398499	16398699	+	781.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2597.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	3.2004774008118	3.89864502724557	3.51422071304876	3.34562738794654	3.55468342338516	3.63107669619627	3.44414262345245	3.71798942328586	0.238030339060643	0.657198213068614	0.857123881679102
Merged-chr17-88042624-4	chr17	88042516	88042716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	22316.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	6.23302390614043	5.97525679395117	6.27253556602927	6.46941847387844	6.47004940138154	6.15366003171091	6.36566662901315	6.44410466449924	0.159992124164081	0.503935985413015	0.770592637321386
Merged-chr2-166305167-4	chr2	166305077	166305277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31269.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	5.40797745056583	5.27266324328868	5.96414977686227	5.72213434302585	5.68761191051322	5.52390085104604	6.13862246129902	5.85349826752427	0.326073164238304	0.283155844398229	0.595290481980728
Merged-chr7-84689990-4	chr7	84689900	84690100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360577)	promoter-TSS (NM_001360577)	-43.0	NM_001360582	65098.0	Mm.209349	NM_022985	ENSMUSG00000030629	Zfand6	3110005P07Rik|Awp1|Za20d3	zinc finger, AN1-type domain 6	protein-coding	8.54333369299967	8.79970634845318	8.55934503118661	8.74425076964138	8.86166415405002	8.87073162513023	9.04284448831153	8.60149459522794	0.229657877205911	0.162144982020038	0.45122118081163
Merged-chr6-97971582-4	chr6	97971484	97971684	+	774.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001178049, intron 2 of 9)	intron (NM_001178049, intron 2 of 9)	-20199.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	4.32123517645415	4.34060946429291	4.14793104619237	4.37349180261806	3.99924261812294	4.17497847652272	4.08309194063061	3.94446703130619	-0.656567959217701	0.104792068757028	0.356037931363077
Merged-chr18-39359548-2	chr18	39359448	39359648	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175164, intron 21 of 22)	intron (NM_175164, intron 21 of 22)	127697.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	3.02901904883184	2.75636833338553	2.69319163625007	2.71286176105864	3.2123471166457	3.14100103976895	3.18246484050703	3.02779567095741	1.48513904406511	0.0128639114120227	0.0944056449527134
Merged-chr7-96629406-3	chr7	96629301	96629501	+	908.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 5 of 32)	intron (NM_011858, intron 5 of 32)	172148.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	3.78117024171268	3.32373972961588	3.46658944982771	3.88566178455765	2.66185248264134	2.93494429305764	3.03888573265035	2.90056390750607	-3.63195990192066	4.81528676867786e-06	0.000143169296953936
Merged-chr10-96466162-4	chr10	96466078	96466278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-150823.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	7.11470383351747	7.38500827692705	7.45568629478395	7.23035372588355	6.93813769175805	6.98271567370235	6.85504887999126	6.23587583689884	-0.706947817704193	0.00223158616434184	0.0254432278698843
Merged-chr8-35792137-5	chr8	35792027	35792227	+	957.392395	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	34432.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	4.5045015305389	4.76949409404656	4.58895243794254	4.52524666943993	4.69586567049726	4.34475811484008	4.48486778530151	5.02559956525403	0.147900183135811	0.693945604608772	0.875656793802988
Merged-chr17-73034608-4	chr17	73034510	73034710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73375.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	7.99167266727326	8.06889765262644	8.00633310265568	8.03758070767497	7.72886335714936	7.61458656983599	8.09970550225894	7.71122987996856	-0.291315032629757	0.0991912906237353	0.345383554946672
Merged-chr15-99823560-4	chr15	99823478	99823678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 3 of 10)	intron (NM_001113545, intron 3 of 10)	-3429.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	7.39130344198989	6.91633817584958	7.03421932525264	7.05800832858293	7.22661142965826	7.02258028436564	7.22706578457905	7.40617362174906	0.166381425164309	0.411616394486618	0.707059954706253
Merged-chr1-165689996-1	chr1	165689896	165690096	+	716.0	f0_balb.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	18098.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	3.23521208644557	3.35455922342929	3.49735530945169	3.30117093617144	3.29270173914008	3.28742019713229	3.10357561256464	2.83056329157355	-0.766929189205965	0.196660644571317	0.497807740730158
Merged-chr12-102438726-2	chr12	102438610	102438810	+	705.5	f0_balb.idr|f0_c57.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	1103.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	4.08485558183041	4.32849862908308	4.49063310380273	3.95245341469822	4.53636603168603	4.26442480160519	4.77267724133115	4.08308021492345	0.532369037371688	0.215455332363968	0.521625619663558
Merged-chr14-122109134-4	chr14	122109068	122109268	+	782.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080556, intron 1 of 16)	intron (NM_080556, intron 1 of 16)	2086.0	NM_080556	68059.0	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	3.4451125862506	3.33232317178462	3.50473482527674	3.86165137553555	3.54067042768157	3.62080994880201	3.5475414345561	3.97960161570053	0.355390288531175	0.504128615411895	0.770626277304553
Merged-chr15-78244088-3	chr15	78243972	78244172	+	684.027771	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_008677)	promoter-TSS (NM_008677)	-739.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	4.13052905499879	4.14156848098897	3.8390642603782	3.84523947591829	3.92932837760621	4.25467514371976	3.97626958330901	3.94138211110676	0.103189220687163	0.812257013749384	0.92748398969564
Merged-chr18-4343501-4	chr18	4343284	4343484	+	852.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	9569.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	3.6908396866918	4.0198188350214	3.9020204093732	3.79126389463585	3.96879060643109	3.86624602000286	3.73273473327985	3.99325092268252	0.121939188068176	0.783763518287371	0.915808900684294
Merged-chr8-119827971-4	chr8	119827876	119828076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	12603.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	6.16162279402237	6.29375663646271	6.33492485551726	6.61447085486535	6.06682226304844	5.78988666561479	6.26634496630087	6.60229878315234	-0.239836238703065	0.372420880625309	0.67622116430777
Merged-chr5-102071388-4	chr5	102071252	102071452	+	882.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1431.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	4.15117073411262	3.97852633119978	3.81742962874252	4.00388803800184	4.03213719072628	3.93732949897725	3.90604229388568	3.96919106866704	-0.0769638939726959	0.85643162771422	0.945966867639044
Merged-chr19-45030713-6	chr19	45030467	45030667	+	897.680542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195265, intron 10 of 15)	MIRb|SINE|MIR	12432.0	NM_001130526	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	3.07033984322731	3.10795781186256	3.07073958075966	2.7883368856705	3.16700211541857	2.92026985611343	3.11547278073086	2.94698046634655	0.166682848448052	0.779774217858042	0.91413591560747
Merged-chr18-65671160-3	chr18	65671063	65671263	+	926.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-27105.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	3.76097645884801	3.72957659173148	4.13683237141083	4.03768546875766	2.99423166091602	3.55043111374577	3.2902176906388	3.22950972989981	-2.34857966038171	6.80053792880731e-05	0.00146644931686698
Merged-chr11-117962301-4	chr11	117962202	117962402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7064.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	5.96937138977022	5.83687434617539	5.66264453230866	5.52527183626014	5.97452544514409	5.96503145772475	5.89742008258492	5.68515386715048	0.235444863928716	0.37098413229172	0.675076902636536
Merged-chr9-98351583-4	chr9	98351481	98351681	+	956.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357445, intron 1 of 3)	intron (NM_001357445, intron 1 of 3)	55011.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	5.94271651558347	6.09332997986563	5.80142086401561	6.01839312420068	4.85423267087206	4.75729923599728	5.11197691171576	4.61209020789598	-2.03094980914379	4.85461074330585e-11	3.90007153609218e-09
Merged-chr1-191194794-4	chr1	191194683	191194883	+	711.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11450.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	3.58331292593441	3.6147665213855	3.47683768777317	3.19780840857865	3.54763103251947	3.64823829189169	3.34826061810302	3.47493964487885	0.141663444988458	0.784933049263301	0.916319510496654
Merged-chr13-34002787-4	chr13	34002631	34002831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009068)	promoter-TSS (NM_009068)	63.0	NM_001243192	20719.0	Mm.252210	NM_009254	ENSMUSG00000060147	Serpinb6a	4930482L21Rik|D330015H01Rik|PI-6|Serpinb6|Spi3|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6a	protein-coding	6.21045124208638	5.98991071000325	6.55643810870506	6.06939966601931	6.50372947055466	6.51870410182338	6.09822925217632	6.37399967117015	0.261168377889066	0.295282055358815	0.607360011623083
Merged-chr1-191910797-4	chr1	191910684	191910884	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009579, exon 2 of 2)	3' UTR (NM_009579, exon 2 of 2)	-3257.0	NR_030669	98736.0	Mm.379232	NM_001024489	ENSMUSG00000055833	1700034H15Rik	4930557M11Rik|BB016121	RIKEN cDNA 1700034H15 gene	ncRNA	5.46374626434993	5.09723554711393	5.69867745204931	6.36395552574445	5.42771631010524	4.75229311286687	5.37905517532599	5.67064308912865	-0.689710280807757	0.0848425972200993	0.316975185152711
Merged-chr5-101966997-3	chr5	101966891	101967091	+	795.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 5 of 66)	intron (NM_172882, intron 5 of 66)	102930.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.67219268869371	3.68119550798391	3.57434795160384	3.53631617721029	3.19171149324008	3.33652378488395	3.27822483412181	3.52013518823694	-0.986063538058242	0.0584444295179754	0.254155428192813
Merged-chr1-171346264-4	chr1	171346168	171346368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012049)	promoter-TSS (NM_012049)	593.0	NM_011070	18637.0	Mm.10756	NM_011070	ENSMUSG00000006412	Pfdn2	ESTM27|W48336	prefoldin 2	protein-coding	5.53294458788352	5.85807848090636	5.32502282509278	5.52484297852991	5.4368054867563	5.62426057013197	5.68418192209603	5.60993347492406	0.0158717310435673	0.954739357656927	0.983838959554429
Merged-chr4-132883823-4	chr4	132883761	132883961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133887, intron 1 of 8)	intron (NM_133887, intron 1 of 8)	597.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	5.38049238167727	5.02595611026857	5.35223022150146	5.65198987435848	5.28095045304092	5.03913850721607	5.78088087782252	5.37767434878037	0.0259195528611822	0.937991018425456	0.977460307804652
Merged-chr11-63026785-4	chr11	63026668	63026868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22634.0	NR_126547	74884.0	Mm.363520	NR_126547	ENSMUSG00000087604	Cdrt4os1	4930452L02Rik	CMT1A duplicated region transcript 4, opposite strand 1	ncRNA	6.28990791908294	6.60439512666787	7.20393732669989	6.69681510643573	6.69138062010291	6.343058787981	6.9665779006107	6.34599082400754	-0.175388849446239	0.523440069449778	0.782507755382099
Merged-chr14-52119299-5	chr14	52119149	52119349	+	900.7416380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023879, exon 4 of 25)	exon (NM_023879, exon 4 of 25)	8346.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	4.35392803294586	4.09085823694976	4.16619138649505	4.01413330161666	4.52548749866453	4.68922954025609	4.49755520983621	4.55393122075507	0.99160724048512	0.0082444760466421	0.0685553224911143
Merged-chr8-79443620-4	chr8	79443514	79443714	+	856.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44146.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	4.27294575380484	4.09496910857469	4.35501474244312	4.31175900071713	4.04487748864093	3.82158426546909	4.12283713013697	4.27090224108926	-0.480332707194258	0.248054296893123	0.559137354284593
Merged-chr8-94528383-2	chr8	94528283	94528483	+	856.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4645.0	NM_153507	234577.0	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	4.02518295589381	3.81845363074799	3.77345566855103	3.50694936981891	4.08655884875658	3.77743562438619	4.29053408042019	4.02328906710388	0.778376520328463	0.0920313853592125	0.331772236279347
Merged-chr4-86874295-4	chr4	86874180	86874380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290541)	promoter-TSS (NM_001290541)	-134.0	NM_001290543	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	8.41281029682488	8.68545937107029	7.93355384348031	8.24341893816222	8.40743692535836	8.30360388793504	8.33915574534877	7.52995730412415	-0.197843475104302	0.408265620077333	0.704278459447095
Merged-chr15-25633133-3	chr15	25633034	25633234	+	717.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	ID_B1|SINE|B4	10584.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	3.6183342831079	3.66345038540368	3.46991073954488	3.24851913858654	3.34766619434341	3.41265139839116	3.28868822137787	3.173467171709	-0.689152648002421	0.204505821301325	0.507782437802491
Merged-chr1-162006269-3	chr1	162006148	162006348	+	909.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040562, intron 2 of 2)	intron (NR_040562, intron 2 of 2)	1279.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	4.07593829517401	4.22262736620049	4.45422974432709	4.13868909659166	4.00334022139152	4.42805142025245	3.85020912700615	3.9189828382222	-0.412152242311353	0.345659478521419	0.653988358142424
Merged-chr9-103305155-4	chr9	103305064	103305264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176979)	promoter-TSS (NM_176979)	-163.0	NM_176979	235559.0	Mm.259893	NM_176979	ENSMUSG00000032555	Topbp1	1110031N14Rik|2810429C13Rik|AI256758|D430026L04Rik|mKIAA0259	topoisomerase (DNA) II binding protein 1	protein-coding	6.9502804744621	6.79990016722457	6.65963386409644	6.69822533262953	7.36014859900896	7.20407289289574	7.38640564399565	6.98503745794733	0.651591904890428	0.00116956413966585	0.0152609360031669
Merged-chr19-33589762-4	chr19	33589672	33589872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013770, intron 1 of 10)	intron (NM_001013770, intron 1 of 10)	539.0	NM_001013770	381236.0	Mm.491242	NM_001013770	ENSMUSG00000024766	Lipo3	AI747699|Lipo1	lipase, member O3	protein-coding	5.12200169137538	5.73453335440335	5.89118622471	5.32869683055666	5.18312484851779	5.50057008692387	5.38742584041978	5.32077399181814	-0.352471252284639	0.267964921652152	0.579829006179617
Merged-chr13-110798377-4	chr13	110798264	110798464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105135.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	4.72862679700738	4.7502655616304	5.14219058037753	5.15008897082878	5.5937179091777	5.37756285500141	5.14830649306991	5.03858862005857	0.644922405193736	0.0559653003612904	0.247610275635026
Merged-chr3-57736992-3	chr3	57736868	57737068	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130743, intron 1 of 9)	intron (NR_130743, intron 1 of 9)	911.0	NR_130743	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	4.31871818173022	3.64734094805229	3.78457009959543	4.02181432860541	4.09475331290809	3.90548811344104	3.53130678402379	4.12070127006735	-0.0838078231917249	0.866568316938436	0.950001534260153
Merged-chr9-52047290-3	chr9	52047161	52047361	+	587.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001104617)	promoter-TSS (NM_001104617)	111.0	NM_001104616	19684.0	Mm.245746	NM_009041	ENSMUSG00000032050	Rdx	AA516625	radixin	protein-coding	3.13783228314257	3.08798398404744	3.25487824954579	3.4394096913515	2.95983072364052	3.11949676564214	3.00090648929134	3.50447387076666	-0.311401508039361	0.603296632717206	0.828026186791373
Merged-chr11-116198918-6	chr11	116198843	116199043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027107)	promoter-TSS (NM_027107)	88.0	NM_027107	69535.0	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	7.13263150443336	7.47210698103993	7.13386891424003	7.15639863832083	7.30163009877642	7.50726894790063	7.09805494106713	7.24186823354534	0.0842654487964148	0.668915371389808	0.863340847602282
Merged-chr1-62720972-4	chr1	62720895	62721095	+	904.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	17678.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	4.38499468622254	4.35130948235429	4.4282907563937	4.21433974529744	4.49474062008868	4.51471884360926	4.4884898378095	4.42547700671954	0.342998823374845	0.347875006249887	0.655739918695498
Merged-chr16-4886142-4	chr16	4886089	4886289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357061)	promoter-TSS (NM_001357061)	89.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	6.84307699224245	6.89869236064702	6.27361185254116	6.51282060095591	7.04755616327023	7.03385313592068	6.79597040288986	6.8258509783607	0.396538789284241	0.082101364821914	0.311105775548531
Merged-chr2-84826970-4	chr2	84826853	84827053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013899)	promoter-TSS (NM_013899)	-68.0	NM_013899	30059.0	Mm.21826	NM_013899	ENSMUSG00000027076	Timm10	Tim13|Timm13a	translocase of inner mitochondrial membrane 10	protein-coding	5.97229025102544	6.30584192833359	6.28019640744996	6.44907878522342	6.55430878695104	6.70262935403669	6.85137509185351	6.33279468415722	0.506174344500642	0.0351042031097619	0.185610018804765
Merged-chr9-89202361-4	chr9	89202294	89202494	+	931.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007534, intron 1 of 1)	intron (NM_007534, intron 1 of 1)	3121.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	4.33596704245681	4.43753073212068	4.50260574086819	3.56962667462371	4.39207330705562	4.5951679829334	4.3599034274763	4.46013311776275	0.469421434813518	0.308125112754691	0.620499730703869
Merged-chr11-116100573-4	chr11	116100473	116100673	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9662.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	5.23392381652769	4.91016093559354	5.11024454903446	5.25337692009978	5.17702113700599	5.07361314850896	4.94845060198472	5.23119357260601	-0.0490314688760272	0.873894136565027	0.952744110383191
Merged-chr17-29318766-3	chr17	29318669	29318869	+	986.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023734)	promoter-TSS (NM_023734)	-113.0	NM_023734	74116.0	Mm.30950	NM_023734	ENSMUSG00000024011	Pi16	1200009H11Rik|Cripi|PI-16	peptidase inhibitor 16	protein-coding	4.68651316441082	4.44224167304536	4.17111790496209	4.64982516496002	3.78215278780954	4.1414095014514	3.99949985725621	4.43268673247313	-0.996619589868077	0.0232136666921512	0.141194778017128
Merged-chr10-39170359-1	chr10	39170259	39170459	+	657.0	f0_balb.idr	Intergenic	Intergenic	-6565.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	3.33884352595832	3.46961142717905	3.509477619859	3.3789177673076	3.44337536955668	3.67813914775413	3.32743658426152	3.50750064426768	0.233236520596051	0.641890810365262	0.848925046283704
Merged-chr14-30125164-4	chr14	30125029	30125229	+	862.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 11 of 46)	intron (NM_001083616, intron 11 of 46)	102496.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	4.32655310109554	4.02679891257912	4.28446873446614	4.68272467388319	4.14271303102048	4.17066625227187	3.97715888176503	4.36578683644005	-0.487325070776731	0.259163740659969	0.570991804521054
Merged-chr6-38712986-3	chr6	38712886	38713086	+	727.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 12 of 14)	ORR1D2|LTR|ERVL-MaLR	49917.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	3.21375039716754	3.52847920896344	3.27538104658855	3.22819874461652	3.51756059483126	3.32448595202665	3.53008912007164	3.33240510410199	0.418768049981575	0.422776053869362	0.714904276021855
Merged-chr2-68436371-4	chr2	68436242	68436442	+	875.1354369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	35639.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	4.5755862723063	4.74762151744373	4.15854694211979	4.17704005723734	4.63120429050915	4.99633194906207	4.34139636259365	4.57331887311909	0.489765717600615	0.230930189360827	0.540396396919272
Merged-chr8-121851145-4	chr8	121851026	121851226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21557.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	6.38993304794486	6.46428523903191	5.75903911963221	6.00983848103813	6.23098588169287	6.44076336459984	6.32365122161606	6.59157858651958	0.326329247289263	0.210124945118277	0.514583471300609
Merged-chr8-72429877-2	chr8	72429765	72429965	+	855.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028500, intron 5 of 8)	intron (NM_028500, intron 5 of 8)	5291.0	NM_029782	73316.0	Mm.196315	NM_028500	ENSMUSG00000019732	Calr3	1700031L01Rik|6330586I20Rik|Crt2|cspn	calreticulin 3	protein-coding	3.45839800483477	3.37554295051352	3.08832268431771	3.07509793031863	3.74387721572399	3.51954414888972	3.54681417645422	3.28476598945432	0.995099752256067	0.0659752390727467	0.273551088830841
Merged-chr15-50824142-3	chr15	50824044	50824244	+	646.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 3 of 5)	MTC|LTR|ERVL-MaLR	64905.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	2.72845526380828	2.65944132243579	3.04530085745885	2.90875402474146	2.93945750754863	3.15609933413171	2.97645815008446	2.92621268983844	0.659774540546688	0.285678642822375	0.597403017136955
Merged-chr11-78475464-4	chr11	78475365	78475565	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168521, intron 7 of 8)	ORR1F|LTR|ERVL-MaLR	9764.0	NM_026740	52466.0	Mm.131618	NM_026740	ENSMUSG00000020829	Slc46a1	1110002C08Rik|D11Ertd18e|HCP1|Pcft	solute carrier family 46, member 1	protein-coding	5.52136391470484	4.92741917936802	4.99102329222009	5.16613813031821	5.48138143434353	5.23773838881825	5.22887144978544	4.70266012865551	0.0591908767213428	0.865868360973228	0.949727926552738
Merged-chr14-50865147-4	chr14	50865063	50865263	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 4 of 54)	intron (NM_009351, intron 4 of 54)	5391.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	4.85885041131879	4.78294939420716	4.93514353826901	4.94970398365165	5.2964356206754	4.99746423476068	5.23101703569865	5.30917534080182	0.633154918796575	0.0391966604351344	0.199156191956059
Merged-chr14-58271536-4	chr14	58271428	58271628	+	943.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	198842.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	4.46935401377334	4.00881414848713	4.98685541988556	5.24288042787027	4.63114785317097	4.11328568235455	5.04869495764826	4.59662478715788	-0.267596778663347	0.590618745978759	0.821119022618502
Merged-chr5-24051273-1	chr5	24051173	24051373	+	626.0	f0_balb.idr	Intergenic	Intergenic	-20583.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	2.35106084433859	2.26654071766663	2.63262443443937	2.51216797632162	1.90914528322957	2.00690033720809	1.98824934551157	2.07105830607953	-4.60397550331438	0.000102231973332025	0.00206779217954387
Merged-chr4-130814014-2	chr4	130813914	130814114	+	770.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	C-rich|Low_complexity|Low_complexity	21477.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	2.37797244822154	2.04434036830747	2.44353611978429	2.10032788556815	2.26477890842633	2.48447009751959	2.43400440601886	2.44220323798104	0.955552737973503	0.217698445783705	0.524668438831122
Merged-chr6-17635664-4	chr6	17635582	17635782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1328.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	7.40024595002213	7.5596926989848	7.60255645120851	7.55474286213927	7.3014023436983	7.2140152057797	7.66231600434205	7.28234429679775	-0.208192500751959	0.268520695935002	0.580146289728247
Merged-chr13-119602410-2	chr13	119602310	119602510	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-21409.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	3.07887938559394	3.16425295138197	3.49208199728228	2.66732808782888	2.71115479501451	3.13091105611392	2.87409883227708	3.13692708702243	-0.638247530542666	0.345452251066457	0.653735298398409
Merged-chr12-32245489-4	chr12	32245394	32245594	+	944.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-36845.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	4.63273512300603	4.28901777265507	4.63349378014914	4.74487866369727	4.64891118079632	4.15821667902727	4.37061507671259	4.47360801273714	-0.35256713778635	0.368101464691696	0.672564472502765
Merged-chr7-81571789-3	chr7	81571671	81571871	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001004185, exon 1 of 10)	exon (NM_001004185, exon 1 of 10)	479.0	NM_001004185	434204.0	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	4.34638961952211	4.6642293653921	4.56665459134468	4.56290694663107	4.88683286538926	4.61390137718675	4.50505502501772	4.48041636172209	0.219630660125775	0.547844890548798	0.797066990585641
Merged-chr12-32640851-4	chr12	32640764	32640964	+	890.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179471.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	4.2050238006494	4.54674684083992	4.39080661219711	4.56821259397921	4.57353783887282	4.33196416557891	4.45376427577248	4.29892494089765	-0.0482424169800841	0.899511564996129	0.96259935780226
Merged-chr3-136898928-4	chr3	136898827	136899027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 8 of 13)	intron (NM_008913, intron 8 of 13)	228861.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	5.94321078144687	5.39641442838332	5.9231923863474	6.62850591626713	5.31051568846321	5.26814196026327	5.46986649418942	5.60728309095426	-1.06910909806482	0.00186310575691698	0.0221392328333211
Merged-chr4-151981536-4	chr4	151981440	151981640	+	941.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172704, exon 16 of 16)	3' UTR (NM_172704, exon 16 of 16)	7446.0	NM_175152	69876.0	Mm.226820	NM_175152	ENSMUSG00000039759	Thap3	2010013E08Rik|2210418H06Rik	THAP domain containing, apoptosis associated protein 3	protein-coding	4.74855070931422	4.69913177304145	4.63408448576587	4.6024930065151	4.88574488342916	4.49755839146697	4.79752265596707	4.70897307929157	0.156956354382232	0.647528148943628	0.851667779256884
Merged-chr1-131357911-4	chr1	131357817	131358017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 5 of 22)	intron (NM_001081011, intron 5 of 22)	-78354.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	6.80401191266102	7.43540402740389	6.97220861356495	6.19147430897554	6.51116514830877	7.04861686381203	6.5625505816822	6.03106275268639	-0.476987482242444	0.138398998818521	0.413877083308272
Merged-chr8-125649630-4	chr8	125649514	125649714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20204.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	6.22415410651287	6.18753221058552	6.51148117907884	6.70979199066302	6.22886947850832	6.31976702595146	6.39594020846192	6.50682708887469	-0.118956649851747	0.623580155864232	0.839051264919852
Merged-chr13-111536607-4	chr13	111536507	111536707	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151444, intron 1 of 1)	intron (NR_151444, intron 1 of 1)	13302.0	NR_151444	102636218.0	Mm.343364	NR_151444	ENSMUSG00000085634	Gm15290	-	predicted gene 15290	ncRNA	4.76512918777226	4.75647797147286	5.42745453393248	4.42483139100933	4.70171466794295	4.77780190887028	4.92538169451501	5.16543428472551	0.032627028178605	0.934547232214683	0.976356212091203
Merged-chr12-12264318-4	chr12	12264203	12264403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	2164.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	6.51045361582007	6.87499781000135	7.17847745462496	6.92796947122153	7.14936279215305	7.02438871142034	7.16373157853801	6.94995551177966	0.250945604150482	0.241024071512615	0.551619163882296
Merged-chr11-87737420-4	chr11	87737340	87737540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009296)	promoter-TSS (NM_009296)	-111.0	NM_001355753	20922.0	Mm.622	NM_009296	ENSMUSG00000020485	Supt4a	AL022777|Supt4h|Supt4h1|Supt4h1a	suppressor of Ty 4A	protein-coding	7.73316374122715	8.13722313996881	7.72637008061852	7.2284343089554	7.92226222014003	7.87100502546268	7.84099893399075	7.7610550432907	0.145650481996989	0.508290430458808	0.773414359067538
Merged-chr10-94317934-4	chr10	94317828	94318028	+	703.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	Lx2|LINE|L1	5979.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	3.80902697543515	3.85998070676729	3.59771361005837	3.53750889393894	3.81266538013876	3.71482379050038	3.74426206200829	3.80732628293856	0.221647950054373	0.631662234679346	0.843531757419958
Merged-chr11-114679239-2	chr11	114679139	114679339	+	830.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	PB1|SINE|Alu	3771.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	2.76439101697096	3.12877812246859	2.69385801397668	2.49203215680697	2.9739740149739	3.00640059654286	2.94576563821879	3.01387396548253	0.867497876301597	0.189054187459084	0.487843967849121
Merged-chr17-24470849-1	chr17	24470749	24470949	+	721.0	f0_c57.idr	exon (NM_025954, exon 1 of 2)	exon (NM_025954, exon 1 of 2)	376.0	NM_025954	67078.0	Mm.28541	NM_025954	ENSMUSG00000043445	Pgp	1700012G19Rik|AI481330|AUM|G3PP	phosphoglycolate phosphatase	protein-coding	3.79136027675321	4.04608786516383	3.79185696266995	3.99895440980429	4.17200473485018	3.79166022376729	4.28471859550969	4.30227939223252	0.617450176434859	0.160684764564538	0.448947278102498
Merged-chr8-122941198-4	chr8	122941071	122941271	+	914.037476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	RMER19C|LTR|ERVK	92797.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	4.25264652478074	4.28298816442449	3.91973533204409	4.28343706202037	4.33509984069073	4.09542724381183	3.90442036840051	3.97075342843163	-0.259283037866644	0.547345562307366	0.796783882293747
Merged-chr5-102002848-2	chr5	102002749	102002949	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	67072.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.18441989527936	3.13264322075188	3.18481221882627	3.1938933690159	3.17840755069258	3.41601475961532	3.11154193891892	3.59803216395461	0.591598925895869	0.281008485209813	0.593153291080506
Merged-chr8-70720107-4	chr8	70720017	70720217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195253, intron 1 of 3)	intron (NM_001195253, intron 1 of 3)	1574.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	8.08269964653321	8.23166575886212	8.10236848550424	8.08998755654311	7.72949854507108	7.64597215817989	7.37973342697136	7.36863329898532	-0.755759051726079	1.85697661578938e-05	0.000476659713434086
Merged-chr8-105700698-4	chr8	105700590	105700790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286345)	promoter-TSS (NM_001286345)	-458.0	NM_001047436	56513.0	Mm.472753	NM_019695	ENSMUSG00000005699	Pard6a	0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40	par-6 family cell polarity regulator alpha	protein-coding	5.68922597202742	5.53452993002198	5.38315784805671	5.65064003907721	5.6990345681503	5.91206141758382	5.73316095164429	5.47068238747535	0.225363934542658	0.40377820648748	0.700988511209081
Merged-chr1-106174866-3	chr1	106174772	106174972	+	935.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	3003.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	4.03114481512594	3.87705867697469	4.4208202065288	4.44367998780988	3.92634727004872	3.99295323155303	4.28407095685466	4.17249434576339	-0.325301581960053	0.464237600830413	0.745287689550157
Merged-chr18-78048602-4	chr18	78048499	78048699	+	973.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001101038, exon 3 of 6)	exon (NM_001101038, exon 3 of 6)	8669.0	NM_001101038	620235.0	Mm.35607	NM_001101038	ENSMUSG00000091055	Siglec15	Cd33l3|EG620235|SIGLEC-I	sialic acid binding Ig-like lectin 15	protein-coding	5.06361953494834	4.68337853239917	4.58755156039642	4.81955392658292	4.73202847197537	4.88959646691452	5.00873012679195	4.96586739431863	0.196145938092612	0.561510992834319	0.80494560024742
Merged-chr1-171053562-4	chr1	171053450	171053650	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356511, intron 4 of 4)	intron (NM_001356511, intron 4 of 4)	5844.0	NM_001356511	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	4.83433557092962	4.87739211899456	4.64842626163025	4.73101099127735	4.73020067783985	4.60783056607913	4.66623963228167	4.6849807090219	-0.205590969905729	0.54102870938095	0.793009827469438
Merged-chr13-34710477-4	chr13	34710381	34710581	+	903.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	-29161.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	4.86111582544589	4.51550963304502	4.86193638887291	4.88978760851638	4.5358242241466	4.61023409804168	4.62445950840863	4.28442597592497	-0.594152734547513	0.100936179353438	0.348744146510806
Merged-chr9-107566228-4	chr9	107566120	107566320	+	820.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019742)	TTS (NM_019742)	-2943.0	NM_010489	15587.0	Mm.4834	NM_010489	ENSMUSG00000010047	Hyal2	AI256841|AU020858|AW555733	hyaluronoglucosaminidase 2	protein-coding	3.90413285030469	4.07178387643778	3.68310699856567	3.82750974092492	4.17035111956063	4.17361423208932	3.54525686774346	4.21673649999245	0.478637039996033	0.312674562060116	0.624578922877903
Merged-chr10-57745631-4	chr10	57745549	57745749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39274.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	6.50579930844151	6.61627196487961	6.708199857652	6.84998693496631	6.40441834250838	6.34047885264587	6.61573130187425	6.50230252567438	-0.318903222258935	0.140348376985832	0.416545702113821
Merged-chr6-71831260-4	chr6	71831153	71831353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253681)	promoter-TSS (NM_001253681)	-67.0	NM_001362134	76614.0	Mm.235123	NM_029673	ENSMUSG00000052337	Immt	1700082C19Rik|D830041H16Rik|HMP|P87|P87/89|P89	inner membrane protein, mitochondrial	protein-coding	8.03823098458944	8.39996093362841	7.89830942088363	8.23101090337849	7.93825454827955	8.00683392368479	8.32752972662755	8.03419495166381	-0.0989817595965487	0.596493424469881	0.824763084775344
Merged-chr9-42897616-4	chr9	42897546	42897746	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175481, intron 1 of 20)	CpG	46725.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	4.79188164275825	4.57976651950539	4.86057661606075	4.62194701799972	4.51335456237729	4.51537242488126	4.45755503580772	4.82381540788103	-0.274538438957727	0.441841319227319	0.728675480159522
Merged-chr1-89563641-4	chr1	89563539	89563739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	108828.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	5.86899833495896	6.03957821321322	5.82341023723517	6.0015892849395	5.67845242162611	5.95021469231475	5.67001503809729	5.66828371805731	-0.328447503468788	0.191281532460434	0.490709586931493
Merged-chr11-69679317-4	chr11	69679223	69679423	+	953.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030702, intron 2 of 10)	intron (NM_030702, intron 2 of 10)	2647.0	NM_030702	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	4.57747602070404	4.75566761373728	5.13178694085086	4.34781894716324	4.89839057611052	4.79680464100131	4.59952315556565	4.88177054625445	0.171280691294573	0.651618387594767	0.854109185522391
Merged-chr12-8301997-3	chr12	8301901	8302101	+	934.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013527)	promoter-TSS (NM_013527)	-47.0	NM_013527	238057.0	Mm.271308	NM_013527	ENSMUSG00000037660	Gdf7	BMP12	growth differentiation factor 7	protein-coding	3.58584294607776	3.76701808306927	4.06268055731649	3.52121896529382	4.22118734580991	3.768650589286	4.12886642927415	4.14560798876714	0.953773702822968	0.0408646939536999	0.204367281251642
Merged-chr7-30634825-4	chr7	30634723	30634923	+	973.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007959, exon 4 of 6)	exon (NM_007959, exon 4 of 6)	1029.0	NM_007959	14008.0	Mm.4829	NM_007959	ENSMUSG00000006311	Etv2	Etsrp71	ets variant 2	protein-coding	4.92262729544475	4.73523884466577	4.73605208909795	4.84959786664537	4.6055641507124	5.09613146550827	4.93372535423418	5.1998858438388	0.30427262719627	0.37483739046018	0.677962865669695
Merged-chr14-20830252-2	chr14	20830158	20830358	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-6404.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	6.37804359594617	6.47994812517823	6.53620553292571	6.37432840524063	6.5700070070201	7.16069991468103	6.25053158381321	6.70003412588677	0.385297880682556	0.12558754599326	0.39351980701947
Merged-chr16-20724597-3	chr16	20724497	20724697	+	711.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289896, exon 6 of 6)	3' UTR (NM_001289896, exon 6 of 6)	6001.0	NM_001289896	21832.0	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	3.55210677889983	3.46071559722844	3.20216672205422	3.36490232167566	3.34364463124945	3.50354415186288	3.68081994644586	3.44405122207648	0.323688458179847	0.52824733461269	0.784921967943483
Merged-chr18-73808733-4	chr18	73808647	73808847	+	985.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145494, intron 1 of 15)	intron (NM_145494, intron 1 of 15)	6645.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	4.97675846642103	4.8812645527975	5.14387192151381	5.21175111894882	5.17909464362267	4.74544271820514	5.087290409418	5.23039891097054	0.0208720492454334	0.948573694599298	0.981488065587328
Merged-chr6-128200722-4	chr6	128200617	128200817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16914.0	NR_077223	330427.0	Mm.426356	NR_077223	ENSMUSG00000107879	9330102E08Rik	-	RIKEN cDNA 9330102E08 gene	ncRNA	9.2626570057276	9.27646813062504	9.12501491281884	9.0304165766351	9.14196262922347	9.06972010627484	9.39523981855324	9.01374624791059	-0.0135752564381576	0.931180073381769	0.975258944629761
Merged-chr15-5347941-4	chr15	5347847	5348047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103760.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	6.40661130207504	6.59976776582439	6.62960085326548	6.21669581838155	6.25239648665935	6.41783519238015	6.42564487453551	6.04493563681326	-0.253290459382318	0.287660336640195	0.599503981867736
Merged-chr11-69040360-4	chr11	69040259	69040459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5278.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	6.07573807865294	6.00377565206001	5.80216670660213	5.71335415555498	5.62255691034016	5.8529586082581	5.51320865813407	5.69938212784346	-0.368245385963091	0.163924614729341	0.453830811039276
Merged-chr6-135198527-1	chr6	135198427	135198627	+	893.0	f1_balb.idr	intron (NM_001362111, intron 1 of 12)	intron (NM_001362111, intron 1 of 12)	427.0	NM_001362111	74525.0	Mm.34182	NM_028982	ENSMUSG00000030207	Fam234b	8430419L09Rik|mKIAA1467	family with sequence similarity 234, member B	protein-coding	3.00687430465235	2.90149868756783	2.8164062228084	2.72933755919015	2.85462889985919	3.11819391370671	3.15979058208668	2.94518171566379	0.698404545048121	0.243907701049736	0.55495161274195
Merged-chr7-90016669-4	chr7	90016572	90016772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12487.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	6.38937716861362	5.88466382003632	6.0982409982225	6.39472583590702	5.9373123123849	5.86876687570596	5.84386289234603	6.30178062432505	-0.33516312638706	0.204157989539196	0.50737576212243
Merged-chr2-45754401-1	chr2	45754301	45754501	+	581.0	f0_balb.idr	Intergenic	Intergenic	57796.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	2.81077143266991	3.01181358548342	3.07296742557148	2.66537149429624	2.31697432386971	2.43157312036362	2.32102303522445	2.32503091372877	-3.85964246040139	0.000165580933215092	0.003107272672111
Merged-chr3-60627780-4	chr3	60627674	60627874	+	998.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001253710, exon 8 of 8)	3' UTR (NM_001253710, exon 8 of 8)	126595.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	5.48810371984388	5.3765902320472	5.5926569638479	5.69762500873715	5.25636036679648	5.14285795707017	5.3494387910974	5.40156778107422	-0.46656460642377	0.100436814926319	0.347921492320569
Merged-chr18-37924420-4	chr18	37924301	37924501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305981, intron 1 of 28)	intron (NM_001305981, intron 1 of 28)	11075.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	6.2853519463541	6.32284198523892	6.34052956534755	6.1908874820743	5.89329691131502	6.51543324039773	5.9206668708502	6.38777378587637	-0.127767989718074	0.616618158269566	0.83509320741657
Merged-chr4-62329527-4	chr4	62329430	62329630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 12 of 27)	intron (NM_001355385, intron 12 of 27)	31066.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	6.92773619496432	7.10143247204739	7.052653389638	7.03303539354984	6.88940161469188	6.87859718578704	6.78586589962034	6.7577132529827	-0.279771537120269	0.139970365357895	0.416006957944365
Merged-chr1-165120526-4	chr1	165120430	165120630	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28600.0	NR_040480	75857.0	Mm.109021	NR_040480	ENSMUSG00000102408	4930568G15Rik	-	RIKEN cDNA 4930568G15 gene	ncRNA	4.7141013357497	4.91384875175636	4.79234199013661	4.92186800987016	4.97381790772229	4.72163878485328	4.84237230702774	4.86229779853536	0.0264913010131484	0.935379712888415	0.976553886506881
Merged-chr14-48199215-1	chr14	48199115	48199315	+	755.5	f0_balb.idr	intron (NR_003630, intron 1 of 2)	B4A|SINE|B4	499.0	NR_003630	624367.0	Mm.445185	NM_001037921	ENSMUSG00000021846	Gm6498	EG624367	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	3.02517101125942	3.177972359296	3.13434353733634	3.34560146412527	2.52925278178811	2.7379115520757	2.62496915236445	2.55226875966891	-3.26936386970805	6.84590981235476e-05	0.00147394136277556
Merged-chr7-107707883-3	chr7	107707768	107707968	+	930.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357438, intron 3 of 20)	intron (NM_001357438, intron 3 of 20)	16025.0	NM_001357438	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	3.69349569819474	3.73096171456784	3.79487127119902	3.95760093506385	3.74907479339493	3.3756828610955	3.62643021772777	3.79263546955046	-0.472008157608443	0.331754736621606	0.642849806093321
Merged-chr14-103007950-4	chr14	103007835	103008035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	Lx10|LINE|L1	-25298.0	NM_177715	239217.0	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	8.21737001366737	8.42231246215862	8.5595281200615	8.10353173342604	8.3702896823382	8.51707802384855	8.48290147715108	8.30058674745563	0.111106448159138	0.518547161751032	0.77958957495568
Merged-chr9-60837550-4	chr9	60837451	60837651	+	905.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357408, intron 1 of 19)	intron (NM_001357408, intron 1 of 19)	43109.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	4.95857894463608	5.03932878755446	4.82504961716268	5.41944436474502	4.0511037341345	4.27406958963073	4.52846069758294	4.50193526546394	-1.64248335061097	2.66464898316013e-05	0.000655833506128475
Merged-chr7-44453503-4	chr7	44453394	44453594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198250, intron 2 of 2)	intron (NM_198250, intron 2 of 2)	11007.0	NM_198250	272381.0	Mm.44173	NM_198250	ENSMUSG00000047085	Lrrc4b	A830007M12|Lrig4	leucine rich repeat containing 4B	protein-coding	5.43125888482922	5.680678632122	5.34264541041323	5.32227727777758	5.43832251976511	5.54836362499913	5.61536263022742	5.399283544493	0.0936609754126504	0.737579198556775	0.896392006995728
Merged-chr18-54987882-10	chr18	54987757	54987957	+	773.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175751, exon 2 of 10)	exon (NM_175751, exon 2 of 10)	2323.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.72133924010205	3.62726717216572	3.77514179057418	3.14973068675269	3.92588417525112	4.13862960899695	3.70649712355532	4.01028432028896	1.11326615343157	0.0284369062072021	0.161708919623108
Merged-chr6-134898387-4	chr6	134898294	134898494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167696)	promoter-TSS (NM_001167696)	-200.0	NM_001362051	14760.0	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	6.82095897018464	6.98489522699582	6.98348172207025	6.87102983892781	7.09718011345801	7.0275298115338	6.8296740349118	7.24956663919628	0.202963985777558	0.302720186133666	0.615215855664921
Merged-chr15-67781053-4	chr15	67780937	67781137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	477819.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	7.75223959242097	7.82405086221146	7.28240771572006	7.25967961585143	7.66691190360122	7.90741723565393	7.63654965135992	7.45473184708047	0.164903149096643	0.442170904747633	0.728953187628121
Merged-chr3-79565231-6	chr3	79565164	79565364	+	861.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	2415.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	5.29341292342013	5.21367132956824	5.1632545006151	5.03610823343541	5.54797581116246	5.69444587719918	5.32842269867334	5.66492612902459	0.707221421796988	0.0127655843909474	0.0939482096114411
Merged-chr5-21386572-4	chr5	21386484	21386684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	L1MB3|LINE|L1	13911.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	6.93398949754001	6.55803502808211	6.81205136962255	7.47952734064368	7.04693528454881	6.7368349176877	7.03528185665952	6.9937898288658	-0.0670069288653886	0.79258356069563	0.919627897475503
Merged-chr2-30286400-4	chr2	30286293	30286493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177648)	promoter-TSS (NM_177648)	-39.0	NM_177648	227697.0	Mm.26690	NM_177648	ENSMUSG00000075419	Dolk	BC026973|Tmem15|mKIAA1094	dolichol kinase	protein-coding	7.13148364956928	6.71134291197029	6.32911607750545	6.62622166069523	7.13721716250147	7.22948108581876	6.93315409434549	7.01267905228705	0.497359654441021	0.0315797249397684	0.173221922855242
Merged-chr4-133212596-4	chr4	133212480	133212680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008154)	promoter-TSS (NM_008154)	-44.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	6.78825136605957	6.7443231891928	5.99195710717501	6.09405037818968	6.82874707582076	6.96495456493684	6.45379467325392	6.61215183101046	0.407301667731737	0.140239308884487	0.416336910539243
Merged-chr3-19258761-3	chr3	19258653	19258853	+	582.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122759, intron 2 of 12)	intron (NM_001122759, intron 2 of 12)	6255.0	NM_008802	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	3.40533409133052	3.23270724514687	3.35175095594321	3.36320966105103	3.31868098972553	3.07786121123901	3.49237690194461	3.29360253446013	-0.121826178744689	0.820047343382262	0.931124064497998
Merged-chr7-27273927-4	chr7	27273807	27274007	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010950, intron 6 of 9)	intron (NM_010950, intron 6 of 9)	15146.0	NM_010950	18223.0	Mm.458153	NM_010950	ENSMUSG00000063160	Numbl	nbl	numb-like	protein-coding	4.72726128773615	4.69540103890337	4.61852127658112	4.70261527144027	4.16317370574141	4.29376565955736	4.47808003664021	4.57680309109739	-0.701231973193887	0.0579314185663757	0.252649987264019
Merged-chr7-19443625-3	chr7	19443522	19443722	+	857.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172279, intron 7 of 16)	intron (NM_172279, intron 7 of 16)	14872.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	3.40324612964319	3.51686385757922	3.14978825749739	3.4235538753948	3.53153646818827	3.5177429374232	3.55149391892106	3.61403229932477	0.560815183515527	0.267029404525503	0.578666686498228
Merged-chr11-79584367-2	chr11	79584267	79584467	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6845.0	NM_175543	268451.0	Mm.130656	NM_175543	ENSMUSG00000017639	Rab11fip4	A730072L08Rik|RAB11-FIP4|mKIAA1821	RAB11 family interacting protein 4 (class II)	protein-coding	3.76099558299605	3.23974477473899	3.2870994475563	3.43335123107032	3.68724690105847	3.40025698803843	3.33737741727235	3.62003735448282	0.266554802340856	0.617362028084993	0.835485812553458
Merged-chr4-66842360-4	chr4	66842249	66842449	+	904.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021297, exon 3 of 3)	3' UTR (NM_021297, exon 3 of 3)	14798.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	5.2812806025524	5.17014781472234	5.36811890574674	5.45321042268669	5.2481982457541	5.26571371295349	4.80138486591448	5.12104491631908	-0.376160132614577	0.222954212788659	0.531069778572449
Merged-chr12-40446729-4	chr12	40446717	40446917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	764.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.76266754620532	5.03648492949531	5.04916404205	4.94106529399158	5.06385024266723	4.85788652086224	4.81829370014638	4.94605496763834	-0.0393443944973641	0.902285845197283	0.963741785300085
Merged-chr8-70897505-4	chr8	70897413	70897613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029751)	promoter-TSS (NM_029751)	-70.0	NM_029751	76808.0	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding	8.15322227576908	8.11648404395373	7.75810321535426	7.98735004629588	8.08128671530058	8.03021003030063	7.98431741948259	7.71126565281933	-0.0654595406167682	0.715133453801411	0.886010584897636
Merged-chr4-45410338-4	chr4	45410199	45410399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1533.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	5.49456114433663	5.72278261145576	5.69913404559132	5.19326072322625	5.31581943749437	5.52543161812451	5.35316990191012	5.59748142040126	-0.140910281983738	0.637158116476875	0.846630032345943
Merged-chr15-83140680-2	chr15	83140580	83140780	+	693.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 1 of 7)	intron (NM_001347082, intron 1 of 7)	8698.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	3.16812877578668	3.15698461973042	3.10816157622568	2.83048467218445	3.1398488130465	3.08877278672307	3.32017182509452	3.38317570309797	0.686759248238673	0.229176463100509	0.53803065625618
Merged-chr5-115489025-4	chr5	115488951	115489151	+	948.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4567.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	3.90679840020311	4.28476834669095	4.35953444889676	3.98477278732475	4.39377246278321	4.68806103087856	4.25254256761945	4.51600892515548	0.791638951239977	0.0506098299517646	0.233296839112781
Merged-chr3-89773402-4	chr3	89773302	89773502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027315)	promoter-TSS (NM_027315)	-2.0	NR_130957	74034.0	Mm.386816	NR_130957	ENSMUSG00000042579	4632404H12Rik	-	RIKEN cDNA 4632404H12 gene	ncRNA	7.67220463619898	7.88164286412951	7.71527786735978	7.59728299383843	7.94492394586893	7.9251126037236	7.88136142747804	7.77407207029669	0.219198020027059	0.191015092714519	0.490378651086737
Merged-chr6-139874625-3	chr6	139874526	139874726	+	658.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207683, intron 23 of 31)	intron (NM_207683, intron 23 of 31)	33181.0	NM_011084	18705.0	Mm.333471	NM_011084	ENSMUSG00000030228	Pik3c2g	C80387|PI3K-C2-gamma	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma	protein-coding	3.3807237683824	3.26895753220253	3.0344468540465	3.53209104741377	3.6719377661753	3.72447381729926	3.86449500836302	3.6543885673362	1.28347802008068	0.0199495855682742	0.127834296772796
Merged-chr19-26635746-4	chr19	26635652	26635852	+	863.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 4 of 32)	intron (NM_011416, intron 4 of 32)	30592.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	4.14163754905682	4.59479053082008	4.50376488373527	4.58283348252894	4.17692185070364	4.32025548634488	4.66383433980084	4.23993347699893	-0.271390999610354	0.499599194897433	0.768387448003553
Merged-chr16-10476102-4	chr16	10475975	10476175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3997.0	NM_001302619	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	5.31120508690066	5.74617298762394	5.37533001783126	5.69061920987049	5.61821884246807	5.55146684104938	5.6946933971693	5.3716183957602	0.0120935593415132	0.96607417823005	0.988022131369328
Merged-chr11-69546533-4	chr11	69546398	69546598	+	750.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 1 of 85)	intron (NM_001081330, intron 1 of 85)	2610.0	NM_001081330	327954.0	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	3.49713338267622	3.11285711301855	3.07762621624314	3.50912426908705	3.32406890924987	3.61377412408937	3.32131084981279	3.4955901571923	0.402104584580519	0.472197036125816	0.750435671036873
Merged-chr5-72861861-3	chr5	72861745	72861945	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 1 of 17)	intron (NM_013689, intron 1 of 17)	6603.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	3.90113733853054	4.12176693976801	4.28216186458098	4.21390418170815	3.54522298356723	3.61958662393319	3.42278964889452	3.84916084826013	-1.56234007432633	0.00128344267554691	0.0164453944559413
Merged-chr14-32192599-4	chr14	32192502	32192702	+	892.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016897, intron 4 of 6)	intron (NM_016897, intron 4 of 6)	9289.0	NM_016897	53600.0	Mm.303703	NM_016897	ENSMUSG00000013701	Timm23	Tim23	translocase of inner mitochondrial membrane 23	protein-coding	4.06957641637597	4.09176528779488	3.51333546810174	3.85591881494512	4.30416755424847	3.99625355050788	4.09623975826425	3.92404077702222	0.517703280929791	0.261002314760563	0.572926972283513
Merged-chr9-119248164-4	chr9	119248049	119248249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359582, intron 13 of 18)	intron (NM_001359582, intron 13 of 18)	-16457.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	5.90700910444017	5.36728977088242	5.70603394266707	5.92968674339201	5.50603041826662	5.19597418188457	5.74759620615839	5.54677150677011	-0.40033416424352	0.176872515468016	0.472122132246978
Merged-chr15-99370544-4	chr15	99370439	99370639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011711)	promoter-TSS (NM_011711)	-57.0	NM_001310622	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	7.46186802264461	7.43897508619032	7.12963130888617	7.02281503894277	7.2993832784567	7.57412689111794	7.08186434381626	7.26025063592412	0.0602027563817893	0.77463612404562	0.911941792753187
Merged-chr16-50841899-4	chr16	50841801	50842001	+	869.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58492.0	NR_131005	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	3.69638013191816	3.91772137487003	3.5770111385517	4.06913028490799	3.92734787810728	4.169895764433	3.98440686556413	3.6949205883726	0.2994478368842	0.531248427445056	0.787097369325
Merged-chr4-130284037-4	chr4	130283942	130284142	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-8456.0	NM_172702	230779.0	Mm.45132	NM_172702	ENSMUSG00000023232	Serinc2	2310004K20Rik|AW121759|FKSG84|TDE2|Tde2l	serine incorporator 2	protein-coding	4.47682426990002	4.95305167510192	4.85132746718833	4.30640004561765	4.96311116411682	5.12699113375145	4.96337423653251	4.8835868465025	0.667886204387196	0.0651291466903133	0.271536086844931
Merged-chr1-16618026-8	chr1	16617925	16618125	+	985.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271016, intron 1 of 6)	intron (NM_001271016, intron 1 of 6)	1313.0	NM_025773	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	4.74969777456426	4.19954867668241	4.91929388881821	4.47995093144888	4.56877659992731	4.73061408062922	4.49236203131616	4.91587953221128	0.171296102639828	0.65902332279408	0.858075830194168
Merged-chr13-9393644-3	chr13	9393544	9393744	+	847.666626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	117119.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	4.14061169394127	3.59128695796528	4.14130387058781	3.88566112686855	3.44870647951385	3.79680764529445	3.6622225219097	3.49574363724522	-1.0611533187934	0.0344013140907436	0.183378352105522
Merged-chr13-98955384-4	chr13	98955268	98955468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER45R|DNA|hAT-Tip100	-28984.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	6.32105687938242	6.37856978901535	6.18861319039811	6.57675046629296	6.06179047016678	6.12367867240595	6.3767569777749	6.22379001546616	-0.289488136451347	0.217150288743206	0.523986046594774
Merged-chr12-3804139-4	chr12	3804044	3804244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2836.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	5.98079281278042	6.24990336410506	5.51516365248883	5.73947468936997	6.0323448163503	5.86826132252854	6.22178366560189	5.99907656866695	0.221822770545507	0.419130017825637	0.712251159515261
Merged-chr5-115235495-4	chr5	115235403	115235603	+	880.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026398)	promoter-TSS (NM_026398)	-348.0	NM_026398	117109.0	Mm.24636	NM_026398	ENSMUSG00000060152	Pop5	1500019J17Rik|2700077E03Rik|AW049989|Rnasep3	processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)	protein-coding	4.20805231243576	4.39937497404224	4.25453975558777	4.12679322064301	4.24944235493915	4.07522482749882	4.27953135457566	4.56851502322912	0.148237539065042	0.710630323423254	0.884197177759025
Merged-chr7-96539290-6	chr7	96539177	96539377	+	861.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310762, intron 4 of 32)	L3|LINE|CR1	-197313.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	3.39442976688939	3.64596288683053	3.79536094762887	3.48508960980857	3.79982855947489	3.69940387845017	3.87291965135805	4.01785535334594	0.811792180489289	0.0845308843741312	0.316375213948169
Merged-chr2-124752010-4	chr2	124751895	124752095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98414.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	5.27137922160355	5.3356234557648	5.24088488443001	5.52775057700113	5.2338481806148	5.09764511117199	5.30636940926452	5.54556425739619	-0.10560650104161	0.722361689210412	0.889150263279452
Merged-chr15-78303657-3	chr15	78303557	78303757	+	939.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287389, intron 1 of 11)	intron (NM_001287389, intron 1 of 11)	2064.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	4.18558093672985	4.00930809081722	5.39223026436806	4.66676077717223	3.80230461318845	3.92032213492525	3.89993532614421	4.02808483529275	-1.85968280149433	0.000344897641043841	0.00568143235173792
Merged-chr2-153108511-4	chr2	153108395	153108595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010407)	promoter-TSS (NM_010407)	27.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	5.82116797725536	5.69262393714125	5.59190633484319	5.40473209605282	5.96099410370764	6.08610449864885	5.86037954222701	5.79445124085364	0.509766100126905	0.0510568557215637	0.234538621065194
Merged-chr8-26158132-4	chr8	26158016	26158216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199042)	promoter-TSS (NM_199042)	-53.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	7.93973290107417	7.99796842580403	7.44132378186096	7.73022916096684	7.9093069555334	7.86859245310756	7.97595953341836	7.55331668984038	0.0560492943359914	0.776625448941827	0.912954960036834
Merged-chr2-18835694-4	chr2	18835585	18835785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33867.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	6.03901545533539	5.9877254758714	5.83615001881491	6.11698557990629	5.71904669777234	5.98798961764727	6.07010964497392	6.17418421926196	-0.0307615329725281	0.902727546227916	0.963896132923657
Merged-chr19-61267115-2	chr19	61267015	61267215	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38697.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	6.56403173784583	6.42463454551692	6.5328052394877	6.13643157983088	6.44621559376938	6.43742191466453	6.80233853581808	7.02256627752018	0.416334346221994	0.0910822878182947	0.329796834093926
Merged-chr10-68278685-2	chr10	68278585	68278785	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023598)	promoter-TSS (NM_023598)	41.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	3.7683758488014	3.67424120726481	3.71443025274167	3.53835711041123	4.39395411331615	3.8345524730252	3.85489905203908	3.81897103683735	0.987447125451193	0.0357202861721467	0.187710169763546
Merged-chr19-44416403-4	chr19	44416302	44416502	+	962.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8693.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	4.06321665758603	4.64560370309047	4.86518392990286	4.81693944234336	4.67694056149547	4.41820685537617	4.9053810790062	4.8283001151818	0.166296694154375	0.68142784055708	0.869396400428053
Merged-chr1-59623499-4	chr1	59623403	59623603	+	834.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013771, intron 13 of 19)	intron (NM_001013771, intron 13 of 19)	47331.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	3.89873272299555	4.16491431051539	4.00390443624376	4.18388113110784	4.31701559417955	3.90592267614571	4.37013090073572	3.95040301101743	0.213895829989398	0.621935903845242	0.838127168329787
Merged-chr7-38141963-4	chr7	38141881	38142081	+	865.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34491.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	4.56417309228665	4.72403044677678	4.21506142808259	4.28896922470562	4.24637496466115	4.57496436162156	4.46525875227113	4.44175696960073	-0.0649055353518068	0.868243426198343	0.95066154527007
Merged-chr8-108780457-5	chr8	108780411	108780611	+	829.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	65867.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	3.12145139776432	3.0639191366672	3.33657042916888	3.25369046365725	2.99806656857298	3.29100436107466	2.78459980856126	2.8631913956848	-0.824295096272977	0.181732743147765	0.478390065102424
Merged-chr13-37581633-3	chr13	37581516	37581716	+	657.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	236271.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.86050367402551	3.66201944776515	3.59801404606484	3.37310382257468	3.79045765403376	3.88285672236135	3.74642542938937	3.99380015046995	0.70637979654112	0.136165602225585	0.410613938350064
Merged-chr9-54963802-3	chr9	54963682	54963882	+	808.027771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-12828.0	NM_145229	246735.0	Mm.473773	NM_145229	ENSMUSG00000044820	AY074887	Mcpr1	cDNA sequence AY074887	protein-coding	3.32050323000157	3.70527037299113	3.5106575161191	3.15600876982903	3.83438515737493	3.50423575302356	3.93730381042149	3.95355177602987	1.21969584859433	0.0182385305839558	0.120393245704849
Merged-chr11-102316825-4	chr11	102316724	102316924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011551, intron 1 of 20)	CpG	463.0	NM_001044383	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	6.38180560057558	6.06304608375602	6.17561309879396	5.97039457412448	6.47906553676993	6.65777069782892	6.3673789886277	6.32515882166557	0.482973253927568	0.0379509930515905	0.194928108992579
Merged-chr10-59326820-4	chr10	59326726	59326926	+	811.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	3530.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	4.02347285182525	3.93299236352192	3.78327145415252	3.92738772353195	3.93040929028604	4.10228008827445	3.71463146133829	3.34779376707895	-0.324669518326535	0.51455411221075	0.777131854124828
Merged-chr5-151368120-2	chr5	151368020	151368220	+	858.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045699)	promoter-TSS (NR_045699)	-555.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	3.68867689729142	3.45321245076345	3.47516145636576	3.32071126893893	3.57096473821212	3.59126100381471	3.62377235567395	3.78176500189733	0.531340890600666	0.276518732125157	0.588504895079849
Merged-chr11-69411317-4	chr11	69411224	69411424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017426, intron 1 of 22)	CpG	2351.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	6.27368823051908	6.49746682032849	6.04029872610232	6.23081809366846	6.65671674647746	6.66453198764825	6.50399739427852	6.45122859002285	0.446596228646866	0.0460688279550485	0.220327427602795
Merged-chr11-109585202-3	chr11	109585105	109585305	+	832.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145940, intron 4 of 12)	intron (NM_145940, intron 4 of 12)	26184.0	NM_145940	52639.0	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding	3.14274350064302	3.23470903265615	3.2579469792063	3.31144685901002	3.36774036089087	2.9076131019357	3.24536705846464	3.08022535967632	-0.269137070154493	0.641548646476858	0.848794290196682
Merged-chr9-55283749-3	chr9	55283641	55283841	+	783.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032002)	promoter-TSS (NM_032002)	-116.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	3.78307176502702	3.84542968168169	3.73206371738741	3.84305070303596	3.7840852616562	3.90271280213183	3.76805381465719	3.50105022553321	-0.171281990585646	0.709692865564641	0.883704992355642
Merged-chr4-63151343-4	chr4	63151235	63151435	+	864.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007443, intron 3 of 9)	intron (NM_007443, intron 3 of 9)	2837.0	NM_007443	11699.0	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	4.57935608352151	5.07327475376928	5.59441375176761	5.32771514835391	4.06973937739078	4.47331960762049	4.46812543450984	4.4857034353617	-1.74282477898353	2.04741975347523e-05	0.0005193631170086
Merged-chr2-112255333-4	chr2	112255228	112255428	+	935.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172521, intron 2 of 6)	intron (NM_172521, intron 2 of 6)	3963.0	NM_172521	213765.0	Mm.78965	NM_172521	ENSMUSG00000041358	Nutm1	4932438M10|Nut	NUT midline carcinoma, family member 1	protein-coding	4.25285895733485	3.77489896195222	4.21057771185249	4.12647892418939	4.35529554204046	3.79881708087385	4.35352279217315	4.1635457216348	0.231980241012756	0.601232229752709	0.827071740947179
Merged-chr3-50444329-1	chr3	50444229	50444429	+	683.5	f0_balb.idr	promoter-TSS (NM_011990)	promoter-TSS (NM_011990)	-716.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	3.2916884413444	3.3424765785037	3.18048803276656	3.20930175731046	2.9048727799	3.23164462766585	2.98346347353361	3.17882300537748	-0.723835176348616	0.206609309168938	0.510630050659024
Merged-chr14-65071063-4	chr14	65070951	65071151	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360385, intron 2 of 5)	intron (NM_001360385, intron 2 of 5)	27055.0	NM_018788	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	4.14225548172202	3.88966199111406	4.23351660014307	3.92909729875291	4.53564392847731	4.06348207369204	4.21446083800873	4.31533243188389	0.653703435048233	0.115734401089331	0.37643296175916
Merged-chr5-114689445-4	chr5	114689372	114689572	+	913.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019821, intron 1 of 4)	RSINE1|SINE|B4	1463.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	4.42816368778584	4.49198244194787	4.51269503898865	4.40652353665725	4.36547385527736	4.76134952932064	4.49190346207596	4.42606894373348	0.126104273178098	0.730510187843259	0.893127409617056
Merged-chr4-53115457-3	chr4	53115374	53115574	+	810.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	44421.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	3.61948694368683	3.84295144245753	3.83060235465585	4.15111812078723	3.64524132774179	3.55095277312799	3.66174065163855	3.82834270687328	-0.644010098411567	0.184912554599816	0.48258537431025
Merged-chr9-104764117-3	chr9	104763998	104764198	+	956.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 2 of 15)	GA-rich|Low_complexity|Low_complexity	194615.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	4.35372222905759	3.95206805879472	3.93311643503782	4.26943914116796	3.14841767812075	3.42347741430868	3.29358141721474	3.22849996709533	-3.15083107609482	1.7416899503519e-07	7.10847184495975e-06
Merged-chr5-124538972-4	chr5	124538892	124539092	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-1799.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	3.51938668170223	3.78385421800645	3.84990386660253	3.97107621440053	3.77344550562422	3.63550988750175	3.92608091887211	3.89519672118725	0.025383188528128	0.957012912643615	0.984757116793997
Merged-chr14-69776082-2	chr14	69775982	69776182	+	899.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_020275, exon 5 of 8)	exon (NM_020275, exon 5 of 8)	8610.0	NM_020275	21933.0	Mm.193430	NM_020275	ENSMUSG00000022074	Tnfrsf10b	DR5|KILLER|Ly98|MK|TRAILR2|TRICK2A|TRICK2B|TRICKB	tumor necrosis factor receptor superfamily, member 10b	protein-coding	2.99623247280832	2.88571060094825	3.05180983098227	2.76386803528917	2.67896487486416	2.92324934528236	2.86823097105477	2.67784363097614	-0.620949234115553	0.328862579613249	0.640144325858488
Merged-chr3-16004517-3	chr3	16004414	16004614	+	741.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081687, intron 1 of 3)	RLTR23|LTR|ERV1	1818.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	3.26143461952757	3.55531718776404	3.53352068519938	3.46736047810857	3.18302593353487	3.24529410989095	3.18931930969262	3.37569099920428	-0.775919977456749	0.146551898540909	0.426967777286073
Merged-chr19-28677617-4	chr19	28677520	28677720	+	973.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045330)	promoter-TSS (NR_045330)	-604.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	4.96530093534943	5.58632769746227	5.13359675046284	5.25177876283849	4.81874132346798	4.99225870834971	4.94218431498889	4.59331820553971	-0.807800908289989	0.0172048419165379	0.11557304852905
Merged-chr8-82367000-4	chr8	82366927	82367127	+	856.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008357, intron 2 of 7)	L1_Mus3|LINE|L1	35559.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	3.7340628766066	3.44877086520798	3.36217255635559	3.04856639914548	3.6304491525404	3.59710231119152	3.5728216321257	3.53304012282025	0.581456910852426	0.279479065904652	0.591495502480744
Merged-chr4-136885499-5	chr4	136885373	136885573	+	938.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009777, intron 1 of 2)	intron (NM_009777, intron 1 of 2)	704.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	3.70064128294136	3.73867958769829	3.7537388630317	3.49004046627334	3.49100708460344	3.97496382832374	3.63201727430382	4.02788113208094	0.382394695906163	0.433929753410161	0.723273836595678
Merged-chr16-45142793-4	chr16	45142709	45142909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028756, intron 6 of 6)	intron (NM_028756, intron 6 of 6)	15864.0	NM_001356453	74102.0	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	6.7194887859264	6.68111251912045	6.44835643978583	6.75107698004065	6.36048389902527	6.25651182691114	6.15459687347224	5.76871465688764	-0.738905766036105	0.00213750752228425	0.0246309936747079
Merged-chr2-75731296-4	chr2	75731209	75731409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26646.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	7.57649777063184	7.76949986222282	7.15944534217909	7.22167099270303	7.52677640770437	7.68351663189114	7.46933924431219	7.46395469255727	0.113592656813285	0.583587327830128	0.817221790684748
Merged-chr14-51132596-1	chr14	51132496	51132696	+	709.799988	f0_c57.idr	TTS (NM_001360117)	TTS (NM_001360117)	3532.0	NR_153407	78416.0	Mm.103835	NM_030098	ENSMUSG00000021880	Rnase6	9530043P15Rik|BB119466	ribonuclease, RNase A family, 6	protein-coding	2.8964694876435	3.12619402928644	3.04635162423272	2.54419368591135	3.60137545571803	3.48272076842684	3.60072810094081	3.70513020168754	2.77991229865605	1.09395149025338e-05	0.000298567381613288
Merged-chr19-42019043-4	chr19	42018953	42019153	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	RLTR34B_MM|LTR|ERVK	-16985.0	NM_020033	56642.0	Mm.143737	NM_020033	ENSMUSG00000025172	Ankrd2	Arpp|mArpp	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding	5.69268773243464	5.86647078946751	5.54844674467202	5.80457927630556	4.80604992963316	5.11757497477314	5.29771506129693	4.80160693762806	-1.31245013639509	1.83350546944807e-05	0.000471485136596259
Merged-chr15-34022118-4	chr15	34022024	34022224	+	810.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60595.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	3.54343658544922	3.30889701489676	3.23894917445334	3.42751507480646	3.12194883349222	3.60670606986583	3.81721997491528	3.95630416982408	0.87759616336223	0.119032179391073	0.381720183060508
Merged-chr17-70846411-4	chr17	70846305	70846505	+	943.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164077, exon 1 of 2)	5' UTR (NM_001164077, exon 1 of 2)	372.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	4.6268918690254	5.31688084499729	4.79470847262528	4.5401534143938	5.16045990549303	5.18330041235105	4.91875781649948	4.8301310450867	0.36013002008742	0.329201795234525	0.640453018367131
Merged-chr19-11485466-4	chr19	11485375	11485575	+	973.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6563.0	NM_001164202	666926.0	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	5.59157381811245	5.2877591739786	5.18993145113609	5.05520697614614	5.18908835283885	5.64039397274253	4.84757319731019	4.90529639839903	-0.195432697546863	0.577410898388196	0.814142275194592
Merged-chr19-40895230-3	chr19	40895157	40895357	+	983.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106167)	TTS (NR_106167)	552.0	NM_028319	72672.0	Mm.313523	NM_028319	ENSMUSG00000049164	Zfp518a	2810401C22Rik|6330417C12Rik|AI426493|Zfp518|Znf518|Znf518a|mKIAA0335	zinc finger protein 518A	protein-coding	4.03444176903692	3.82625731064322	4.2641992244581	3.49209801800936	4.09181670869112	4.39416866733823	3.85983430351886	4.62320798846534	0.885806495892769	0.0707165022334201	0.285105064427789
Merged-chr4-132945617-6	chr4	132945490	132945690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23039.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	5.15134983682017	5.42407599178273	5.46582081785026	5.0085825758087	5.63953966987501	5.97611054705007	5.16183464332682	5.54268313442978	0.604684364157632	0.0582462415870389	0.253681039584155
Merged-chr1-166349948-3	chr1	166349868	166350068	+	960.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-29199.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	3.75234485104097	3.56716162903239	4.00376884405268	4.02397228513462	3.74285093083426	4.25885810894152	3.8925041329608	3.80491489921457	0.213422786626671	0.65490317187971	0.855755637835083
Merged-chr15-74930520-4	chr15	74930415	74930615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24536.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	5.75877249071232	5.70199621281139	5.54489382519032	6.02719798057249	6.07002557691418	5.50315634693947	5.75489667034748	6.0415611106806	0.137859595549392	0.627354065294967	0.841151302397407
Merged-chr2-17932051-4	chr2	17931954	17932154	+	986.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64904.0	NM_026627	68231.0	Mm.23887	NM_026627	ENSMUSG00000062651	H2al2a	1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1	H2A histone family member L2A	protein-coding	5.11787015427439	5.026351101557	5.26909971556296	5.197418286505	5.03181145077262	4.88754733113424	4.84995117125709	5.17748578889027	-0.309271532816818	0.319199697945932	0.631084809179864
Merged-chr14-66278423-3	chr14	66278318	66278518	+	728.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	2634.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	3.09960290025164	3.22148173982875	3.0409683019084	3.09288468737203	3.13643179337268	3.08677136458947	2.96936599867655	2.84482043863354	-0.396302148199652	0.497249757899025	0.766982020988234
Merged-chr16-35983278-4	chr16	35983158	35983358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008465)	promoter-TSS (NM_008465)	-105.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	6.92551444146965	7.37104963676926	6.76820998757461	7.03364536856517	7.12836113766131	7.29171981429932	7.32122516406917	6.98773868819072	0.18940446157197	0.376302106270946	0.679125531727079
Merged-chr18-34759442-6	chr18	34759292	34759492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357456)	promoter-TSS (NM_001357456)	65.0	NM_001357457	66306.0	Mm.29424	NM_175104	ENSMUSG00000034300	Fam53c	2810012G03Rik|Gm21179	family with sequence similarity 53, member C	protein-coding	5.44396059609976	5.77764638697795	5.90594235862413	5.31857258430798	5.8254545897867	5.8962740975505	5.44804574487997	6.043393031343	0.331673578979382	0.262986055214603	0.574751586604446
Merged-chr3-60472160-4	chr3	60472055	60472255	+	853.3916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253713)	promoter-TSS (NM_001253713)	-675.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.89340159299934	4.2405125493573	4.716725608647	4.7033629231222	4.87622143197474	4.44891419629659	4.83703780250979	4.9235211958463	0.274501405789396	0.463786268568866	0.744988576808808
Merged-chr17-31075643-4	chr17	31075538	31075738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	17944.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	7.87550446806795	8.30591146502221	8.20396371027396	7.85476452451682	7.27853747737403	7.09792130874788	7.21224042913169	7.35476594969701	-1.09293945938697	1.8336575609928e-08	9.27842661309213e-07
Merged-chr2-179976840-4	chr2	179976735	179976935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033782)	promoter-TSS (NR_033782)	-18.0	NR_033782	66730.0	Mm.31773	NR_033782	ENSMUSG00000085704	4921531C22Rik	-	RIKEN cDNA 4921531C22 gene	ncRNA	6.97757198582334	7.51564465062578	6.60700951870628	6.84875789132812	7.27858512172291	7.32393364631531	7.11132412397314	6.77933625981584	0.149477688656533	0.557598863978761	0.802786163202762
Merged-chr2-59401195-4	chr2	59401074	59401274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14492.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	6.43254431010923	6.39037836544894	6.85738723867498	6.80301735554776	6.33946507151438	6.43900313983249	6.71582828857753	6.90279983516234	-0.0439031397707931	0.85801836470349	0.946496029407037
Merged-chr10-95501933-4	chr10	95501793	95501993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359477)	promoter-TSS (NM_001359477)	56.0	NM_001359476	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	5.90992297332656	6.15762246236631	6.06364871886673	6.10529513531402	5.88587504394356	5.86107047315767	5.96987396548855	6.03863221761976	-0.20410314397115	0.389500282931131	0.689760676686943
Merged-chr11-8689730-4	chr11	8689647	8689847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25212.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	6.8835567695628	6.88070380357945	6.70531710214897	6.61506406578719	5.9946520432367	6.05930899463433	5.82127630123919	6.11406398306891	-1.1485562056808	4.76856662374781e-07	1.77707750634422e-05
Merged-chr11-83058936-4	chr11	83058824	83059024	+	960.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-6188.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	4.66471503437455	4.99932563892554	4.46302388519189	3.95684911134996	4.54539601899976	4.63900500735864	4.39854276998292	4.6992189960451	0.00986593390612113	0.981836306228299	0.993492379943959
Merged-chr12-4160555-4	chr12	4160463	4160663	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	26410.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	5.13753949413308	4.58347193521988	5.13841862320866	5.18686664453495	4.97711168189958	5.11443364134966	4.80617706121171	4.937286813645	-0.150669276325737	0.658067376138938	0.857677183558236
Merged-chr2-120036410-4	chr2	120036329	120036529	+	882.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104353, exon 15 of 27)	non-coding (NR_104353, exon 15 of 27)	2996.0	NM_145378	211429.0	Mm.41467	NM_145378	ENSMUSG00000098488	Pla2g4b	A030011C02Rik|Gm1013|cPLA2-beta	phospholipase A2, group IVB (cytosolic)	protein-coding	3.86402344202295	3.91548929225021	3.92069323782671	4.07219660411073	4.23951075087418	4.20141661323439	4.31997146032591	4.55520294671668	0.949968894519538	0.0216829474775655	0.135051672952891
Merged-chr18-82470206-4	chr18	82470107	82470307	+	868.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4916.0	NM_001025245	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	4.50134758817784	4.42123374178463	4.2731937511968	4.87694779751615	4.43691347481888	4.35057998425274	4.98717300772405	4.45658070017227	0.0590953768433122	0.886571164956352	0.957444179369024
Merged-chr11-96982517-4	chr11	96982368	96982568	+	889.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4780.0	NM_001080964	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	3.58373011805554	3.3987965113405	3.47637078584969	3.33265410185713	3.40170846437618	3.53511957933553	3.21959823565701	3.93954046585513	0.342122251629429	0.523077957090013	0.782359002463945
Merged-chr19-40662172-4	chr19	40662125	40662325	+	816.428589	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	2455.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	3.32462345557817	3.19488059525373	3.3799218372728	2.65480179503971	2.9541038276413	3.32526275876601	3.06924468157633	3.70668139653368	0.446472568554153	0.499806468669668	0.76850696952904
Merged-chr1-192138662-3	chr1	192138568	192138768	+	876.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144814)	promoter-TSS (NM_144814)	-628.0	NM_001290282	214742.0	Mm.207457	NM_144814	ENSMUSG00000037395	Rcor3	4921514E24Rik|C730034D20Rik|E130101E15Rik	REST corepressor 3	protein-coding	4.24058249418101	4.22787973173394	4.60577623847451	4.343824183877	3.96585381440741	4.41561843976092	4.22269023442369	4.56702855223298	-0.138286453689872	0.738440135194268	0.896751301187029
Merged-chr5-110448005-4	chr5	110447877	110448077	+	930.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001142642, exon 1 of 19)	exon (NM_001142642, exon 1 of 19)	526.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	4.31797199661981	4.58126732418753	5.32167761118648	4.54930909565723	4.58680791774848	4.60018952386746	4.65974905379379	5.08268705366446	0.00545153067884659	0.989609393937058	0.9958352002014
Merged-chr5-31727628-4	chr5	31727505	31727705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181281, intron 2 of 10)	intron (NM_181281, intron 2 of 10)	29555.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	6.70308548094091	6.76678443639447	6.34332871794704	6.80326370090889	6.8015569356425	7.07344530885803	6.84999160647439	6.57391041464856	0.223085213130855	0.319227101012514	0.631103362694156
Merged-chr10-61383604-5	chr10	61383502	61383702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013753)	promoter-TSS (NM_013753)	-79.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	6.07408260201732	6.17975784568628	6.48788490619754	6.06791134828728	5.87568810487599	6.40940304489606	6.04408389173752	5.98290844505279	-0.187029438681708	0.466006642564727	0.746263717184356
Merged-chr3-152396525-4	chr3	152396414	152396614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287139)	promoter-TSS (NM_001287139)	-170.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	7.99278195870291	8.06155266314133	8.59348201868737	7.97884697354765	7.65804859854902	8.20544864620805	7.50220933917348	8.00229089148521	-0.401428381829049	0.0776357969892044	0.30130973321959
Merged-chr2-33755839-4	chr2	33755761	33755961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 7 of 9)	intron (NM_175184, intron 7 of 9)	-49955.0	NR_045729	320482.0	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	6.78739573164652	7.08574864615858	7.09367129082141	7.15483916492768	6.59138017716714	6.62199896097961	6.72507716776851	6.90697539489252	-0.467016767546704	0.0238348916581862	0.143718599577966
Merged-chr6-82769917-4	chr6	82769813	82770013	+	934.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	4541.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	4.53257656626798	4.67306585523076	4.25234851607383	4.24794346469215	5.17548410922932	4.57793072593338	4.63184868002623	4.65082593827505	0.790975456103306	0.0416832010991764	0.206734346550319
Merged-chr15-90109613-4	chr15	90109524	90109724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114687.0	NM_001033441	380959.0	Mm.17853	NM_001033441	ENSMUSG00000075470	Alg10b	AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5	asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)	protein-coding	6.41199854310644	5.72182096468304	6.34887270292219	6.73758845538871	5.5423996024227	6.00335158653269	6.0418375330343	4.92865838091584	-1.0197142671364	0.0612897039228855	0.261955521065466
Merged-chr3-51195470-4	chr3	51195368	51195568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28979.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	8.30647333725146	8.56387636223356	8.7452487593921	8.58298886905089	8.42435223786264	8.63725065611786	8.76862916137983	8.27328562429612	-0.0270742201429739	0.880654134538191	0.95520054617661
Merged-chr8-103482417-3	chr8	103482328	103482528	+	753.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121371.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	3.8059397871098	3.43215897973108	3.66694364685629	3.90718621583486	3.22955788499891	3.44563835560534	3.32037167269604	3.45139650136186	-1.23465766287461	0.0194364393707163	0.125495856129192
Merged-chr18-75695920-2	chr18	75695820	75696020	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 1 of 11)	intron (NM_201354, intron 1 of 11)	1776.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	3.36691174250537	3.3016573601643	3.42419803485242	3.37570929544215	3.38531015933959	3.64729775761461	3.23481834747239	3.57889198508283	0.342856120297793	0.504343055237371	0.770655921364685
Merged-chr14-26580262-3	chr14	26580161	26580361	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145969, intron 1 of 17)	intron (NM_145969, intron 1 of 17)	711.0	NM_145969	211922.0	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	5.99874857680885	6.22069552896145	6.67192243434732	6.5322696259788	6.09719286753958	5.95612149821323	6.17747715704145	5.74491836592467	-0.580692684567624	0.0283455298021454	0.161343979671084
Merged-chr6-137704453-3	chr6	137704348	137704548	+	955.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30634.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	3.97591535326634	4.07971546363003	4.48755208601074	4.26175566563698	4.10454536945479	4.09942659222577	4.01113255400081	4.07480466672221	-0.368187521062511	0.379081624042644	0.681638269994477
Merged-chr1-133424247-2	chr1	133424147	133424347	+	998.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011439)	promoter-TSS (NM_011439)	-35.0	NM_011439	20668.0	Mm.8575	NM_011439	ENSMUSG00000070643	Sox13	AA407916|AW259412|AW540933|Sox-13	SRY (sex determining region Y)-box 13	protein-coding	3.01737207543038	2.80203238869391	2.90477124811293	2.72650638917534	2.5640364475556	2.75002127502819	2.83396385437556	2.90320551830569	-0.453367822509242	0.482876950108095	0.757447571054589
Merged-chr14-66868746-4	chr14	66868653	66868853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009955)	promoter-TSS (NM_009955)	-97.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	7.96513713333846	7.82087294956059	7.68165898096778	7.95559736800683	7.97260622532831	8.13008603764877	8.03350038517263	7.95421551740022	0.202050439437092	0.221393974650923	0.529463056908312
Merged-chr9-77732283-3	chr9	77732178	77732378	+	884.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22257.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	3.66391741211242	3.69083943307937	3.88482437852207	4.43705418235794	4.02190986756817	3.95387474766608	4.09732746464054	3.60131502052375	-0.120244527228546	0.817701978740444	0.929981783742416
Merged-chr10-128083812-1	chr10	128083712	128083912	+	543.0	f0_balb.idr	intron (NM_016774, intron 1 of 9)	CpG	505.0	NM_016774	11947.0	Mm.238973	NM_016774	ENSMUSG00000025393	Atp5b	Atp5f1b	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	protein-coding	3.47199588010022	2.954058886911	3.28446399429849	2.8340561566364	2.82703929341087	2.83230079376988	2.71574190544971	3.1768073255586	-1.0764590101204	0.110509577925988	0.367070850118713
Merged-chr2-26628456-2	chr2	26628356	26628556	+	665.224976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019833)	promoter-TSS (NM_019833)	-1.0	NM_019833	56279.0	Mm.279863	NM_019833	ENSMUSG00000036186	Fam69b	AB030186|AW209000|B230317C12Rik|PIP49	family with sequence similarity 69, member B	protein-coding	2.97107081236609	3.31622544722734	2.9714410553582	2.77457501839858	2.76394468676839	2.87898549714828	3.07742292075242	3.03036269498236	-0.335050780495169	0.595800971554429	0.824164868462124
Merged-chr3-9881090-4	chr3	9881023	9881223	+	943.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-47444.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.86885459164914	4.39583862673292	4.50213847818211	4.20080310501899	5.24275104456081	4.77326112400824	5.51188559703836	4.75504777081251	1.25502534882175	0.00129201939957779	0.0165463563948448
Merged-chr8-120818231-4	chr8	120818108	120818308	+	964.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79569.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	5.53397341724047	5.29755707145681	5.76819103702546	6.01328501107364	5.10988943113263	4.83733581004331	4.89804036638645	5.24470334863971	-1.18134966015505	0.000333443035234256	0.00553386772403788
Merged-chr8-11459230-4	chr8	11459125	11459325	+	999.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-18704.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	5.50725765915339	5.61668145226461	6.87408050605606	6.63517675072493	5.1228869786828	5.30925007227348	5.8253394686875	5.5042955301565	-1.31913641432892	0.0195468012219315	0.125991285355054
Merged-chr18-54985857-4	chr18	54985778	54985978	+	975.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	4302.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	6.03419994750842	5.00513192595833	4.91893288385399	5.37255346372724	4.90081769759817	5.54495932033586	5.42687224937671	5.47778492459817	-0.0930825081599804	0.808694674419492	0.926138274128125
Merged-chr16-21310974-4	chr16	21310909	21311109	+	997.392822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14137.0	NR_046162	328646.0	Mm.404748	NR_046162	ENSMUSG00000096918	Gm16863	A830060N17	predicted gene, 16863	ncRNA	5.43645257936697	5.0315909100047	4.97426987132649	5.27675252223227	5.18060191628363	5.32156465698987	5.21654203306271	5.1115185841403	0.0173943700165091	0.954604821929013	0.983809929923338
Merged-chr11-5009888-4	chr11	5009788	5009988	+	782.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243043, intron 2 of 22)	intron (NM_001243043, intron 2 of 22)	23064.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	4.96715502982998	4.52061516705174	5.14101944577622	5.03270922796226	4.13274837708857	4.47280020321508	4.63131584042076	4.38772859879161	-1.15177601235926	0.00295894762881236	0.0316333633630572
Merged-chr3-142530857-3	chr3	142530759	142530959	+	753.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083312, intron 1 of 10)	intron (NM_001083312, intron 1 of 10)	523.0	NM_145545	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	3.47032394078534	3.67948335997186	3.52971621286752	3.48808889571317	3.72560954609854	3.70298195567843	3.72610811731574	3.78769245942795	0.604886136224589	0.192317285755233	0.491877545194816
Merged-chr15-31460781-4	chr15	31460698	31460898	+	954.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 25 of 25)	intron (NM_172606, intron 25 of 25)	-7109.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	4.96835928946584	4.99801524742717	4.89985971394861	5.20803986582201	4.87275444767179	4.7565958169599	4.97813595736267	4.57480986301509	-0.459496695970249	0.168699778545514	0.461025936308499
Merged-chr17-83272782-4	chr17	83272712	83272912	+	900.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57529.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	3.93747305640302	3.69464558515812	3.6202976303498	3.79635182999677	3.98103529110986	3.85413165917839	4.05291593455308	3.8879336225902	0.509143420116372	0.248574279798523	0.55976334179148
Merged-chr1-9806093-4	chr1	9805997	9806197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177547, intron 1 of 16)	intron (NM_177547, intron 1 of 16)	7967.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	6.02172271487384	5.83620004941087	5.732565522833	6.20727567050484	6.28538099744022	6.21942066370859	6.0751890337831	6.08168170670081	0.296232981411196	0.239108164690717	0.549600505217823
Merged-chr15-10486008-4	chr15	10485927	10486127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026396)	promoter-TSS (NM_026396)	9.0	NM_011232	19355.0	Mm.38376	NM_011232	ENSMUSG00000022248	Rad1	mRAD1	RAD1 checkpoint DNA exonuclease	protein-coding	7.56898852980663	7.97601611714652	7.65844750594966	7.74207970576403	7.8361809912912	7.78335319190008	8.0429637873616	7.56511402512731	0.0928761837662114	0.622946665520608	0.838817288834706
Merged-chr19-4930762-2	chr19	4930633	4930833	+	704.25	f0_balb.idr|f0_c57.idr	3' UTR (NM_001347422, exon 6 of 6)	3' UTR (NM_001347422, exon 6 of 6)	-2446.0	NM_133803	75221.0	Mm.234769	NM_133803	ENSMUSG00000063904	Dpp3	4930533O14Rik|C86324|DPP III	dipeptidylpeptidase 3	protein-coding	3.75928154094041	3.56844017303357	3.44343800088875	3.56078322892933	3.69825073208654	3.5571132202926	3.48885350932095	3.71027337291803	0.112097651112713	0.816086502325153	0.929190254316708
Merged-chr2-103958362-4	chr2	103958264	103958464	+	905.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142337, intron 1 of 3)	L2b|LINE|L2	369.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	5.00788690879902	4.72171209268788	5.00874107873295	4.5559656843251	4.93736587527903	4.60229398127938	4.70677924858816	4.83797082896286	-0.0721340514048543	0.839060714563044	0.938856878340637
Merged-chr4-95052300-4	chr4	95052215	95052415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010591)	promoter-TSS (NM_010591)	-93.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	9.13693266294513	9.26475457544636	9.25672807444826	9.13512731349755	9.34899399465623	9.40763724595462	9.22828758018807	9.21489935104852	0.128775238893987	0.354053685881857	0.660831376621657
Merged-chr11-120712940-2	chr11	120712840	120713040	+	945.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347612, intron 1 of 5)	intron (NM_001347612, intron 1 of 5)	827.0	NM_016665	20892.0	Mm.259716	NM_016665	ENSMUSG00000025144	Cenpx	Stra13	centromere protein X	protein-coding	3.31445265962162	2.91664833674566	3.4234093166271	2.94287693795955	3.55064562755388	3.37135645822724	3.35641020729679	3.25532037342773	0.855970319582124	0.136553368747641	0.411042630338623
Merged-chr4-24496369-4	chr4	24496268	24496468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199467)	promoter-TSS (NM_199467)	-83.0	NR_149739	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	8.03827513304335	7.92865684531732	8.27923105520155	8.37449933975742	8.09445196625127	8.23741975930314	8.45968587307961	8.17497337752007	0.093147256180371	0.609848583719672	0.831308047964887
Merged-chr12-69503833-4	chr12	69503725	69503925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-28275.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	5.25874514503318	5.78601819830253	5.25964678373923	4.83547543372466	5.35241535736509	5.465085622249	5.23355878983485	5.15876375512265	-0.0253121534884809	0.941569358211813	0.978951013688942
Merged-chr3-88504542-4	chr3	88504452	88504652	+	968.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1200.0	NM_001002011	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	5.14586389786596	5.45866181599004	4.96544350489026	4.76686782920796	5.40577848062745	5.72110255681241	5.52114009327777	5.1089519638729	0.64463682158499	0.0536060973925365	0.241668399607207
Merged-chr11-103964225-4	chr11	103964129	103964329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2496.0	NM_001304574	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	6.82706431403255	6.75263330628214	6.86809946792631	6.57074338384615	6.80430288304482	6.53790543731849	6.87170177486825	6.58664076314773	-0.0483972635039745	0.819638656517878	0.930948039985942
Merged-chr17-88496525-3	chr17	88496425	88496625	+	977.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33599.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	4.92526011115117	4.7538774260992	4.59014736022343	4.86563168104204	3.33233405583518	3.56886923449532	3.50690644646771	3.66197653245851	-4.13328555693316	8.31631427398258e-12	7.58906325266418e-10
Merged-chr3-53459673-4	chr3	53459577	53459777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172501, intron 3 of 6)	intron (NM_172501, intron 3 of 6)	3581.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	5.36907551172807	5.27373278290147	5.78549777026883	5.15250575964113	5.19357157040029	5.3593037931061	5.31406727405095	5.2447699245695	-0.227006605228918	0.463408918466132	0.744716504278444
Merged-chr4-151995782-2	chr4	151995682	151995882	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172705, intron 1 of 3)	CpG	397.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	3.68304415058088	3.68939827355463	3.97779049350158	3.68672251208008	4.13902949178876	3.4898149485367	3.72251156741943	3.83686426927698	0.204928255374536	0.675721138047551	0.866921233647741
Merged-chr15-81905204-4	chr15	81905112	81905312	+	963.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080633, intron 7 of 17)	Tigger20a|DNA|TcMar-Tigger	21001.0	NM_030229	78929.0	Mm.215115	NM_030229	ENSMUSG00000022476	Polr3h	5031409G22Rik|RPC8	polymerase (RNA) III (DNA directed) polypeptide H	protein-coding	4.91742751958086	5.3464836692994	5.06928129101605	4.80623042179856	5.66190213635267	5.37982637504488	5.60662490112664	5.16851726682211	0.79284314880397	0.0128188911319245	0.0942012716208603
Merged-chr2-38925773-2	chr2	38925673	38925873	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010264, intron 1 of 10)	CpG	688.0	NM_010264	14536.0	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	3.397418883822	3.33063156846253	3.75273209976923	3.32273976282675	3.35129088204403	3.45253862360172	3.38511645748185	3.65882255160935	0.0339016905712727	0.948278992946562	0.981388084353081
Merged-chr6-28833441-5	chr6	28833367	28833567	+	783.97998	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 16 of 23)	CpG	-1720.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	4.16345504404843	3.83554887385919	3.74489247700803	3.75547556283879	3.21338034309401	3.31264015562702	3.45574475107234	3.63907779275558	-1.55238108224338	0.00359726852357366	0.0368364229951733
Merged-chr1-16227888-3	chr1	16227747	16227947	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025303)	TTS (NM_025303)	121965.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	4.13121644504079	3.49771401530753	3.7873864689013	3.76324940893245	3.40688272446153	3.80409388260537	3.43817340163998	3.78510883604553	-0.591242548162009	0.250952449235051	0.562197505562515
Merged-chr8-84977721-6	chr8	84977611	84977811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008416, exon 1 of 1)	exon (NM_008416, exon 1 of 1)	1037.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	8.03114605483852	8.45991813063689	8.17888760074408	7.3652297457047	8.28462671775454	8.43814819869276	8.3028380696972	8.04053940068711	0.269728341605554	0.258504918592287	0.570389684111402
Merged-chr10-79985067-4	chr10	79984954	79985154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003949)	promoter-TSS (NM_001003949)	-794.0	NM_001003949	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	7.95623300144319	7.87303113064088	7.56392038949586	7.7116293430604	7.89988190839583	8.11420079666918	8.20107201005874	7.88862156904679	0.320191785424657	0.0746781127107101	0.294684188082694
Merged-chr4-63545880-4	chr4	63545755	63545955	+	933.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024173, intron 1 of 2)	intron (NM_024173, intron 1 of 2)	1090.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	4.57847770193831	4.49957152754483	5.07308095728456	4.97956236654714	4.68652027003803	4.91379400322563	4.60041589582254	4.65960354156433	-0.201923593672226	0.580431129710157	0.815718435955212
Merged-chr11-86257591-4	chr11	86257514	86257714	+	990.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027421)	promoter-TSS (NM_027421)	-46.0	NM_027421	70422.0	Mm.171304	NM_027421	ENSMUSG00000018068	Ints2	2810417D08Rik|AA408260|AI987735|mKIAA1287	integrator complex subunit 2	protein-coding	5.70700278127624	5.27570210901532	5.45237352243598	4.99278400703889	5.87498443185969	5.56987317346531	5.36743526201759	5.39062355202982	0.369858994402537	0.249201478817978	0.560328612484111
Merged-chr19-10577344-4	chr19	10577175	10577375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302218)	promoter-TSS (NM_001302218)	111.0	NM_028411	72982.0	Mm.391194	NM_028411	ENSMUSG00000024666	Tmem138	1700113I01Rik|2900055D14Rik	transmembrane protein 138	protein-coding	5.47573006519214	5.51821000371368	5.63256410941744	5.18191841517759	5.23732013265778	5.59472940623768	5.27270753555223	5.65273115977318	-0.00457061463468536	0.987861401009121	0.995370064932717
Merged-chr8-120720069-4	chr8	120719966	120720166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16292.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	6.23005379006145	6.48798612413428	6.42009352257654	6.72552967339625	6.40567850400176	6.63061965631441	6.69519876416098	6.09829157020538	-0.0260291730649068	0.916239335747006	0.968921139801819
Merged-chr4-138262305-4	chr4	138262180	138262380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190978)	promoter-TSS (NM_001190978)	29.0	NM_010623	16559.0	Mm.271936	NM_010623	ENSMUSG00000028758	Kif17	5930435E01Rik|AW492270|Kif17b|mKIAA1405	kinesin family member 17	protein-coding	6.84523763334502	7.27753037356951	6.76350970553045	6.4940608786809	6.55601250863997	6.89653753068423	6.38792971183799	6.71510108619232	-0.315556292229259	0.212101204035121	0.516916493972183
Merged-chr10-80695373-4	chr10	80695271	80695471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	6449.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	8.30298560089187	8.17919162881365	7.91795800203887	8.51328443965956	8.07267565948875	8.02699862696457	8.19260941182514	8.09204076617113	-0.202130012498599	0.268210207319838	0.580076430005696
Merged-chr8-75151487-2	chr8	75151387	75151587	+	981.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41978.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	3.60634966162797	3.00012068586316	3.28166050811525	3.16081971693557	3.65202872250537	3.45689781299261	3.32922612789628	3.55594317708677	0.80669131564987	0.143913522342567	0.422521886108792
Merged-chr9-104233290-4	chr9	104233194	104233394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 6 of 56)	intron (NM_001359740, intron 6 of 56)	29636.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	6.52798209411961	6.34769283158957	6.93298377476596	7.1470296497988	6.96762547311058	6.82444752643335	7.01915834543575	7.07277936406249	0.253211234183518	0.303585043309167	0.616199378285137
Merged-chr4-48585435-6	chr4	48585382	48585582	+	724.694458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001356272, exon 1 of 10)	exon (NM_001356272, exon 1 of 10)	308.0	NM_021436	230157.0	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|TR-1|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	3.88147334038408	4.16602825494341	4.18416191858808	4.47389576020847	4.1169256898028	4.05960345459057	4.07375427443162	4.30940153318391	-0.174103086701175	0.686430024470196	0.871787672169905
Merged-chr11-80089438-4	chr11	80089383	80089583	+	924.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029856)	promoter-TSS (NM_001029856)	83.0	NM_001029856	237877.0	Mm.89551	NM_001029856	ENSMUSG00000017550	Atad5	C130052G03Rik|FRAG1|Gm17	ATPase family, AAA domain containing 5	protein-coding	4.58169735322054	4.81965891016603	4.25706746316746	4.18101628320685	4.87748598104904	5.22615201927947	4.29006640679579	4.61992050341915	0.67616906023934	0.111058792640671	0.368173527146865
Merged-chr8-109777808-4	chr8	109777704	109777904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009677)	promoter-TSS (NM_009677)	-779.0	NM_009677	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	5.33351772279293	5.30616848518593	5.71491288871402	5.62844227855535	5.66792462582587	5.23413738657547	5.48398713625589	5.82280726653888	0.106959955255416	0.718071497595258	0.887335796877561
Merged-chr2-43555244-4	chr2	43555154	43555354	+	911.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289594)	promoter-TSS (NM_001289594)	-71.0	NM_001289593	70789.0	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	4.79310304368057	4.86349408448305	4.64629982255591	4.64054348507643	4.53627679732506	4.56466465042697	4.45952155477542	4.68176565852124	-0.375403538176089	0.281749884318505	0.593925998911027
Merged-chr4-120405118-4	chr4	120405000	120405200	+	772.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159630)	promoter-TSS (NM_001159630)	-181.0	NM_001159630	29871.0	Mm.427014	NM_013883	ENSMUSG00000000085	Scmh1	AI315320|AI851618|Scml1|Scml3	sex comb on midleg homolog 1	protein-coding	3.73866448925382	3.86670725302774	3.98965238163254	3.57273008514939	4.09447766828865	3.966451217317	3.97193946051787	3.68078615983117	0.437439829701786	0.341586114638931	0.650639445837748
Merged-chr7-123149093-4	chr7	123148995	123149195	+	718.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144925, intron 3 of 23)	intron (NM_144925, intron 3 of 23)	25210.0	NM_144925	233833.0	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	3.5743683799188	3.34716239555304	3.6849378363507	3.90455691261092	3.76647074148879	3.69132220476127	3.81758355769566	3.83188745778286	0.353760663418677	0.476164537776778	0.752752032426828
Merged-chr2-147036050-2	chr2	147035930	147036130	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356402, intron 13 of 28)	intron (NM_001356402, intron 13 of 28)	23031.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	3.04505379732303	3.13651246675194	3.18022790620315	3.37083113517788	3.51756931231118	3.35596506568803	3.23136871392662	3.78153215278872	1.00200161191114	0.0777136260704064	0.301464831329525
Merged-chr14-63411938-8	chr14	63411830	63412030	+	932.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	5257.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	3.42415364271604	3.43989807618003	3.36842221973341	3.81002028969527	3.26123514549756	3.29405603196323	3.35602307447542	3.36668831680273	-0.773550638292254	0.150554204412213	0.433279331898958
Merged-chr13-38528897-3	chr13	38528800	38529000	+	872.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145367)	promoter-TSS (NM_145367)	-76.0	NM_001289598	105245.0	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding	3.93353311697731	4.01584117976533	4.02782969213985	4.28225151626307	3.79531887851229	3.44343901203058	3.86851065311907	3.97942733215439	-0.82472590885891	0.0818515596640594	0.310503508141883
Merged-chr6-39205452-4	chr6	39205311	39205511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033430, intron 1 of 19)	intron (NM_001033430, intron 1 of 19)	1362.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	6.04430130441304	6.25611344325987	6.10851396458923	6.20375341429423	6.23176967668691	6.10936750267492	5.72676270370922	6.25838122133182	-0.0877492583559228	0.721845970581142	0.888962841966766
Merged-chr7-140908802-4	chr7	140908718	140908918	+	976.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015583)	TTS (NR_015583)	2754.0	NR_015583	212965.0	Mm.387212	NR_015583	ENSMUSG00000109628	BC024386	BC039766	cDNA sequence BC023486	ncRNA	4.95472159635933	4.79285957033369	5.23039261660024	4.64258324265165	4.48391256109897	4.64651895415398	5.059838330545	5.22668261935086	-0.0572602061514855	0.881057114128521	0.955322489265647
Merged-chr7-100150606-4	chr7	100150546	100150746	+	950.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8631.0	NM_026010	67164.0	Mm.46777	NM_026010	ENSMUSG00000030725	Lipt2	2610209A20Rik	lipoyl(octanoyl) transferase 2 (putative)	protein-coding	3.91466735886316	3.86559539902819	4.25373328853415	3.86477958163977	4.23542130362453	4.38143663068053	4.10128075609826	4.41033354512689	0.797501349869627	0.0543025051748185	0.243349260851462
Merged-chr8-69887396-2	chr8	69887296	69887496	+	814.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026818)	promoter-TSS (NM_026818)	-4.0	NM_026818	68709.0	Mm.334584	NM_026818	ENSMUSG00000044006	Cilp2	1110031K21Rik|AA407300|CLIP-2	cartilage intermediate layer protein 2	protein-coding	2.68085517450169	2.59866872811835	2.61512893620712	2.59669580760867	2.70062388683633	2.78678678495723	2.73408412380289	2.80245701817162	0.658239759622617	0.293520210845022	0.606013394135677
Merged-chr19-9984708-13	chr19	9984558	9984758	+	884.8012699999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011913)	TTS (NM_011913)	2012.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	3.62544751305466	3.52548750173284	3.46851963691935	3.39523398688372	3.36376218659138	3.79332537859496	3.27824751211058	3.35012344951181	-0.144272257985804	0.782283181924987	0.91529005173258
Merged-chr5-103774882-2	chr5	103774782	103774982	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	20309.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	3.30008173056958	3.22163684097165	2.99608625050381	2.86007857906003	3.12429093273177	3.46960480818713	3.23212496617952	3.18536733356117	0.609111776788205	0.291281720554785	0.60358490792923
Merged-chr9-65021701-4	chr9	65021611	65021811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021345)	promoter-TSS (NM_021345)	6.0	NM_021345	57874.0	Mm.308180	NM_021345	ENSMUSG00000033629	Hacd3	4930523M17Rik|AW742319|B-ind1|Hcad3|Hspc121|Ptplad1	3-hydroxyacyl-CoA dehydratase 3	protein-coding	6.11375339348904	6.32849336367541	5.734386189276	5.99016439464421	6.09383919951525	6.36939728034719	6.16271796726528	6.28286501443699	0.255212921106442	0.30519393037244	0.617661724201953
Merged-chr2-154539924-2	chr2	154539824	154540024	+	684.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009823)	TTS (NM_009823)	-8980.0	NM_029305	75480.0	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding	3.3633444302782	3.34597745581363	3.3042016005047	3.24335703594898	3.44036910494853	3.41773058348189	3.74323931880653	3.41889385537832	0.694569129053602	0.170197191903715	0.463203311692493
Merged-chr19-4201282-2	chr19	4201182	4201382	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011237, intron 2 of 10)	intron (NM_011237, intron 2 of 10)	321.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	3.46803792270399	3.51471198592339	3.62174461591542	3.04556725671602	3.24477953732007	3.40990573912297	3.22037375887752	3.66661869748273	-0.0933559084588807	0.869194330397774	0.950896832752134
Merged-chr7-6170535-4	chr7	6170470	6170670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1943.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	5.62174420959331	5.18990642883199	5.2322243215339	5.83833663855619	5.48822356730421	4.95163311878543	5.20655561854062	5.43871666167399	-0.385245053989823	0.246979751750445	0.558168726560377
Merged-chr9-3335579-4	chr9	3335476	3335676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026303, intron 1 of 11)	intron (NM_026303, intron 1 of 11)	345.0	NM_026303	67667.0	Mm.116968	NM_026303	ENSMUSG00000025899	Alkbh8	4930562C03Rik|8030431D03Rik|9430088N01Rik|Abh8	alkB homolog 8, tRNA methyltransferase	protein-coding	5.54314302512155	5.58202255916287	6.07732504699258	6.00265940984207	5.0845509313634	5.48046032939762	5.2750130265942	5.74404423986519	-0.712520602124585	0.0221952243782764	0.137307399202471
Merged-chr19-55781862-4	chr19	55781772	55781972	+	815.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	40062.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.5493237911128	3.58150665211264	3.86660972648686	3.88293367451129	3.89212193076407	3.66566696309968	3.89526938627059	3.6622459246151	0.1471201884671	0.756524475903551	0.904365847712391
Merged-chr4-125123451-4	chr4	125123364	125123564	+	830.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153159, intron 2 of 5)	intron (NM_153159, intron 2 of 5)	4417.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	4.26549204396371	4.67960242746087	4.03203558662204	3.645340670345	4.15712615116565	4.25792516957326	4.15879462936079	3.97743374209351	-0.168274978096141	0.7281487902899	0.891802789958958
Merged-chr8-86872306-4	chr8	86872205	86872405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	12953.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	6.61563629485068	6.53355766184283	6.09660372862704	6.65804740084773	6.33190031272981	6.29629962053453	6.1914399337666	6.31538995285362	-0.325753750153302	0.16528608735617	0.455900168074775
Merged-chr2-102825045-1	chr2	102824945	102825145	+	573.0	f0_c57.idr	intron (NM_001039150, intron 11 of 13)	MTD|LTR|ERVL-MaLR	76620.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	2.83701823192555	2.49345286926346	2.63004644302326	2.32531128975341	3.29252964866721	2.94944996316589	3.05778659201358	2.83589874072801	2.3223213085243	0.00102192011733034	0.013677933815618
Merged-chr6-116014334-4	chr6	116014236	116014436	+	791.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19331.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	4.0337289806774	4.38618415361615	4.30633999329308	4.08311946183751	4.11053715001871	3.81107110169041	4.06647914202516	4.38250812997081	-0.244042104304821	0.571475613010074	0.810639407396363
Merged-chr7-118584669-3	chr7	118584587	118584787	+	899.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172476)	promoter-TSS (NM_172476)	-1.0	NM_172476	209760.0	Mm.69380	NM_172476	ENSMUSG00000042246	Tmc7	1700030H01Rik|C230064B05|C630024K23Rik	transmembrane channel-like gene family 7	protein-coding	3.77056002134965	3.43689492598636	3.62431913939942	3.18508194013958	3.55687126250788	3.24070458379814	3.6592376040487	3.85780504680296	0.26754710675037	0.625348378064829	0.839851429183237
Merged-chr2-168556276-4	chr2	168556181	168556381	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	34084.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	5.09288426444775	5.30125494723597	5.61049700974042	5.66074854454798	5.11079290650262	5.08394990779446	5.43312092641603	5.05443055852675	-0.490418362346603	0.121836229087334	0.386736574661404
Merged-chr1-40084584-4	chr1	40084458	40084658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360801)	promoter-TSS (NM_001360801)	-156.0	NM_010555	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	6.10774088132202	6.21653352290568	6.28868419051123	6.26040893126718	6.41562778585289	6.26410090285017	6.36302193561159	6.40814154173149	0.215928537112178	0.321056251375872	0.632807846658013
Merged-chr9-25510798-4	chr9	25510703	25510903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	29206.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	8.09476253741099	8.11945581876713	8.54562097083407	8.25134088264648	8.19873741825447	8.03773297506568	8.37210587618846	8.32206334044782	-0.031694501944153	0.85892229954368	0.946576014812915
Merged-chr10-21159858-3	chr10	21159759	21159959	+	660.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198914, intron 1 of 15)	CpG	1125.0	NM_001198914	17863.0	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	3.5587737143118	3.28193147349058	3.41406989954468	3.28644785680714	3.04448569726048	3.10244414256403	3.11712490193849	3.24815474701439	-0.991444248883475	0.0762587589609297	0.298263009064823
Merged-chr7-81571237-4	chr7	81571156	81571356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004185)	promoter-TSS (NM_001004185)	-36.0	NM_001004185	434204.0	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	7.29454230326176	7.15256584060919	6.97916164367001	7.37885755816439	7.33835840933133	7.3532208110764	7.33941187640561	7.08881375869021	0.0889262358727641	0.647076526007172	0.851605116430591
Merged-chr13-12520230-3	chr13	12520129	12520329	+	945.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133643, exon 1 of 6)	5' UTR (NM_133643, exon 1 of 6)	221.0	NM_133643	171211.0	Mm.159671	NM_133643	ENSMUSG00000095105	Edaradd	1810032E07Rik|5830469M23Rik|A630043P06|cr	EDAR (ectodysplasin-A receptor)-associated death domain	protein-coding	3.47375336027026	3.20039860299599	3.25365245203503	3.58560790132505	3.30469720088418	3.23702675178451	3.24228459538321	3.42066509897063	-0.339189485546148	0.531584229233193	0.787480152606494
Merged-chr4-43672285-4	chr4	43672174	43672374	+	889.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355718, intron 1 of 11)	intron (NM_001355718, intron 1 of 11)	3303.0	NM_001355718	242409.0	Mm.171489	NM_001085508	ENSMUSG00000078716	Tmem8b	4930500O05Rik	transmembrane protein 8B	protein-coding	4.11141386857156	3.5906928621267	3.6610931183321	4.12630359754211	4.06270367448716	3.77955594298057	3.86510316198803	4.10943682923006	0.15866249539265	0.741343071891764	0.898139463026673
Merged-chr15-101267623-4	chr15	101267551	101267751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010444, intron 1 of 6)	intron (NM_010444, intron 1 of 6)	805.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	6.12668833798914	6.55261727331554	5.30603016973322	4.95177909939209	6.99779497578605	7.31906705907013	6.23445329561454	5.89357160869943	1.21805529229235	0.0796653090562259	0.305663508852021
Merged-chr10-99088432-4	chr10	99088338	99088538	+	873.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18644.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	3.94808792360514	4.42991955198608	4.2978898102263	3.898507571926	4.41636468845055	4.33446335125187	4.40213062156264	4.4199618080362	0.591692138026334	0.148332470824221	0.430071295027352
Merged-chr2-167381827-4	chr2	167381716	167381916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32638.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	6.50595864011244	6.75537467239958	6.55533304677587	6.37983168362023	6.55112863774139	6.30589424685438	6.42394120688612	6.26922556142523	-0.217782816713882	0.332585667765037	0.643531688755946
Merged-chr11-75454649-4	chr11	75454551	75454751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138950)	promoter-TSS (NM_138950)	66.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	6.58077339700819	7.03270463827431	7.07375804699129	6.64990323188053	6.57307544026293	7.0807401049593	6.5648539063108	6.87363827688666	-0.088930297984303	0.708652903956506	0.882981567950148
Merged-chr8-61875479-4	chr8	61875364	61875564	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 2 of 21)	intron (NM_001293772, intron 2 of 21)	27226.0	NM_001081390	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	4.85181228514503	5.34900960174447	4.96421397644667	5.43958321248508	4.98115215162866	5.06642099964426	4.70889128759956	4.88765261845138	-0.530939632901406	0.121141145073452	0.385390724845415
Merged-chr3-96558407-3	chr3	96558310	96558510	+	897.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023719, exon 1 of 8)	exon (NM_023719, exon 1 of 8)	453.0	NM_001009935	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	3.63196928163328	3.59571353193035	3.63246181747204	3.58881479674632	3.76963097013498	3.57040488443865	3.61821287317663	4.2382107504777	0.646371147238218	0.185401009894558	0.483323267040901
Merged-chr9-66887015-4	chr9	66886957	66887157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	32648.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	7.11921085969901	7.31907857960405	7.33059300060201	7.27362985875352	7.3109044560077	7.33321033824175	7.29410239222246	7.36555224666942	0.0814228277656683	0.643209214749309	0.849500662349075
Merged-chr5-9266113-6	chr5	9266024	9266224	+	811.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359887)	promoter-TSS (NM_001359887)	6.0	NM_001359887	231014.0	Mm.130063	NM_172706	ENSMUSG00000056004	9330182L06Rik	Eig121l	RIKEN cDNA 9330182L06 gene	protein-coding	3.77095701372049	3.74384370127553	3.83053772392096	4.26333245172384	3.97349699792272	4.59127083924263	4.24951466669671	4.26667184076848	0.869472133202708	0.0685111851616625	0.279522965070617
Merged-chr7-84665545-2	chr7	84665454	84665654	+	641.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001360577, intron 1 of 7)	intron (NM_001360577, intron 1 of 7)	13842.0	NM_022985	65098.0	Mm.209349	NM_022985	ENSMUSG00000030629	Zfand6	3110005P07Rik|Awp1|Za20d3	zinc finger, AN1-type domain 6	protein-coding	4.03202620839122	4.35033114010171	4.31366951544622	3.50907903376563	3.59542461994398	3.66934349071436	3.40202662197818	3.93691078806661	-1.21938248256654	0.0247569067386736	0.14749910979761
Merged-chr15-81811404-4	chr15	81811321	81811521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017376)	promoter-TSS (NM_017376)	7.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	8.31139466781516	8.38388059547668	8.24986837266797	8.19001940221764	8.34269676596479	8.50710686877014	8.59121524088529	8.23267475736797	0.178833215976502	0.26937277615176	0.580985541291622
Merged-chr5-88508712-4	chr5	88508633	88508833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19164.0	NM_152839	16069.0	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	6.94213031460996	6.49767527875932	7.21430492153252	6.79745485973582	7.15764726253917	7.12040385302828	7.22980636789473	7.21979018344454	0.417774525225182	0.0530031503487959	0.240108920508768
Merged-chr4-152159344-3	chr4	152159236	152159436	+	762.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301805, intron 1 of 4)	intron (NM_001301805, intron 1 of 4)	469.0	NM_008236	15206.0	Mm.57038	NM_008236	ENSMUSG00000028940	Hes2	HES-2	hes family bHLH transcription factor 2	protein-coding	3.20159095212694	3.08981618840216	3.41996877040474	3.12477264537989	2.95807374629109	2.97678714162594	3.12995396358885	3.64580681501473	-0.0126161892794282	0.98346599135736	0.994023625787392
Merged-chr9-110666114-4	chr9	110666016	110666216	+	856.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	9613.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	4.25570270391052	4.40522977800828	4.30539829825968	4.51236129326924	4.58442164078517	4.48216372588127	4.62071154905547	4.90519161831212	0.600353872137585	0.106182079201159	0.359097933931643
Merged-chr9-24516981-3	chr9	24516871	24517071	+	949.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13831.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	4.3024710901185	4.20105503537612	4.34596162174058	4.46660978008907	3.9426302031055	4.2415503868563	4.5539967400125	4.16287426639033	-0.250595255399435	0.545141345364657	0.795786194536872
Merged-chr5-101753827-4	chr5	101753709	101753909	+	829.779175	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-11321.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	4.22563932402562	4.29883324038519	4.18173953025351	3.74626898448291	4.24957607418509	4.05592780343872	4.24983426065541	4.22363557290621	0.216097939205376	0.616191931637215	0.834845587136962
Merged-chr19-21467196-3	chr19	21467098	21467298	+	691.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010266, intron 1 of 13)	intron (NM_010266, intron 1 of 13)	5463.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	3.83764159134672	4.00190086739956	4.44930885298778	4.53636646325571	3.39288468175224	3.90382781127723	3.97855255035867	3.9933817238338	-1.1095823245192	0.0300731797951643	0.167494433852895
Merged-chr14-25735592-4	chr14	25735502	25735702	+	873.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	33254.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	4.67327919827962	5.04287831829305	5.00945990757164	4.80103912245606	4.08761867122986	4.50407751253126	4.4898305061156	4.41738102427194	-1.14522205347589	0.00236532033432599	0.0265928245321688
Merged-chr9-124014367-1	chr9	124014267	124014467	+	878.6666869999999	f0_balb.idr	Intergenic	Intergenic	-7604.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	3.55833440960265	3.13116072345104	3.6483461317003	3.62305493776802	2.91562406799946	3.16590791340838	2.97513240920582	2.98254864070101	-2.03090428639021	0.00111934964442814	0.0147190445853963
Merged-chr17-29394305-4	chr17	29394185	29394385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33371.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	6.7065493464904	7.24014270575442	6.30388897672676	5.94373640913471	7.0209060954682	7.40517589310941	6.67334058896236	6.71787205816688	0.489503759014091	0.124901783809682	0.392245916455235
Merged-chr10-41519326-5	chr10	41519225	41519425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016898)	promoter-TSS (NM_016898)	-175.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	7.00026208995254	7.29130603569034	7.58268583073135	6.97103064870486	7.33341402042059	7.54248727017126	7.10306724190423	7.37039528514078	0.159291185932445	0.467115165810334	0.746794627088042
Merged-chr13-81024743-4	chr13	81024645	81024845	+	957.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	IAPEY3-int|LTR|ERVK	60671.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	4.15517677134393	4.71345908318711	3.94679596110401	3.24911164911199	4.59402723274009	4.37999596876325	4.35674475144382	4.10400408894813	0.556529748012259	0.31174412856979	0.623665218229603
Merged-chr11-94118827-3	chr11	94118753	94118953	+	921.511108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025428, intron 26 of 26)	intron (NM_001025428, intron 26 of 26)	74648.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	4.5053776396827	4.05641628716058	4.18738309992858	4.60693551390173	3.93650979331103	4.06177248283361	3.8097711182542	4.13872223311282	-0.975696592838516	0.0262533820473808	0.153527540719898
Merged-chr19-60889264-3	chr19	60889149	60889349	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018869)	promoter-TSS (NM_018869)	-500.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	4.68219331830912	4.62958913411899	4.78728387825637	5.04974512578578	4.06229354129496	4.0415793650502	4.5477568889169	4.30359692353579	-1.28359964634463	0.00137538759741339	0.0174228001061199
Merged-chr18-82902738-4	chr18	82902656	82902856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8123.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	6.49690284833327	6.48715696014136	6.2116925620823	6.32950994498326	6.14174372694216	6.28440120619644	6.48063886948201	6.34052387383779	-0.109518073113715	0.628155822680655	0.841427212108636
Merged-chr10-108099056-4	chr10	108098955	108099155	+	946.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63345.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	4.56228243574366	5.03539942913111	4.77458599502666	5.17772765689722	4.53659206298874	4.98732428225311	4.96542893034875	5.01891791713201	-0.0882402176673794	0.809613374111375	0.926542616430318
Merged-chr19-46588094-4	chr19	46588058	46588258	+	833.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053196, intron 5 of 11)	intron (NM_053196, intron 5 of 11)	-10948.0	NM_001177812	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	3.21768470972229	3.20503490244866	2.95927613879594	2.99363940924601	3.27720338597574	3.33116602173827	3.20596996422776	3.52735461055947	0.925947581875765	0.0912616572715199	0.330110453446972
Merged-chr11-51917246-4	chr11	51917165	51917365	+	944.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-50366.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	3.74070044484449	3.64969242258548	3.79273568528636	3.73180185576699	3.8425786504191	3.74865338805962	3.82605239588423	3.93309937774888	0.328707418578783	0.457983331946175	0.740965918504302
Merged-chr15-27630010-4	chr15	27629907	27630107	+	842.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 1 of 6)	(TG)n|Simple_repeat|Simple_repeat	686.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	3.85322649556837	3.96260165479965	3.80007679829592	3.97699157559403	3.89472979303914	4.21699959176795	3.93817313913502	3.95256395199429	0.25548278912019	0.55373193764	0.800354486026964
Merged-chr4-126554665-4	chr4	126554571	126554771	+	906.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-2309.0	NM_175554	269582.0	Mm.243962	NM_175554	ENSMUSG00000042489	Clspn	B130025E01|C85083|E130314M08Rik	claspin	protein-coding	4.43261722045047	4.47219916966356	4.29410141293512	4.56477613226313	4.75487551209917	4.84360095717965	4.61668819255268	4.55725180657493	0.534272468248638	0.135756208239052	0.410161345823146
Merged-chr17-46680340-4	chr17	46680270	46680470	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102392)	promoter-TSS (NR_102392)	-83.0	NM_001277310	17256.0	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	4.31026023219213	4.44489612427954	4.82210678189435	4.21796508284358	4.66324734694299	4.5791669458331	4.62685240533279	4.48814941648732	0.312674775706151	0.412758591429596	0.707787832411092
Merged-chr10-39420035-4	chr10	39419937	39420137	+	983.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	50238.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	5.07943142693395	4.57477636440754	5.26799747392116	5.43379448614677	5.18023710394504	5.03829418719931	5.21253790482333	5.20486638486411	0.0374761878802459	0.91433005986135	0.967950384482346
Merged-chr10-43672605-4	chr10	43672499	43672699	+	940.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73559.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	4.76507060746772	4.69428510207586	5.07692585373262	4.9241120254484	4.57456710573902	4.68768191703606	4.98946052478305	5.21764585289531	0.0234978082758693	0.947607064534067	0.981331257394211
Merged-chr4-118152202-4	chr4	118152088	118152288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161823, intron 12 of 21)	intron (NM_001161823, intron 12 of 21)	-17242.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	6.03406851724912	5.58469579443502	6.035143426654	6.26862314164336	5.56612317567012	5.28607152983722	5.46325167250724	6.31671616109209	-0.459456392658618	0.171645244680159	0.465040228040842
Merged-chr2-51372931-4	chr2	51372835	51373035	+	974.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64965.0	NR_130155	73375.0	Mm.396227	NR_130155	ENSMUSG00000086007	1700057H21Rik	-	RIKEN cDNA 1700057H21 gene	ncRNA	5.85418369325408	5.61626070302755	5.74481557003816	5.91870862836077	5.31940632536066	5.38573063282239	5.48986089539265	4.97263145440354	-0.842717794199517	0.00324648911634042	0.0339626467977652
Merged-chr8-13964674-4	chr8	13964573	13964773	+	975.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361630, intron 2 of 3)	intron (NM_001361630, intron 2 of 3)	10104.0	NM_173744	72148.0	Mm.5727	NM_173744	ENSMUSG00000050052	Tdrp	2610019F03Rik	testis development related protein	protein-coding	5.13241208055424	5.43897038022376	5.66186152888169	5.37952752511899	5.14091029409375	5.68287468285053	5.85104511478926	5.36171749216675	0.19974722553328	0.528287875415876	0.784934672970676
Merged-chr17-45595361-6	chr17	45595198	45595398	+	997.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357771, intron 1 of 13)	intron (NM_001357771, intron 1 of 13)	274.0	NM_001199116	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	4.20705636940568	4.08448004278082	4.10723111914944	4.35471832690839	4.70139189772012	4.5169874279255	4.36796313110741	4.42644032716725	0.725623086141806	0.0625882329647909	0.265018907447998
Merged-chr16-16302542-2	chr16	16302442	16302642	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038046)	promoter-TSS (NR_038046)	-423.0	NR_038046	70120.0	Mm.37486	NM_198246	ENSMUSG00000022792	Yars2	2210023C10Rik|tyrRS	tyrosyl-tRNA synthetase 2 (mitochondrial)	protein-coding	5.32245277587352	5.35495229067706	5.12885719942302	5.20064618217727	5.48474758168777	5.61061031883047	5.6125913301909	5.19319522222934	0.417590926576907	0.146488093621815	0.426876116265749
Merged-chr10-77964192-4	chr10	77964096	77964296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 4 of 33)	intron (NM_138301, intron 4 of 33)	5676.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	7.60159643545704	7.15982188575928	7.88814301838447	7.63234755358212	7.70957805556268	7.18269410134373	7.89056522262906	7.59766725428278	0.0381822082440592	0.867319904251973	0.950313421774078
Merged-chr19-4793990-4	chr19	4793893	4794093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290122)	promoter-TSS (NM_001290122)	16.0	NM_001290124	19653.0	Mm.426069	NM_009032	ENSMUSG00000094936	Rbm4	4921506I22Rik|Lark1|Mlark|Rbm4a|lark	RNA binding motif protein 4	protein-coding	8.04411613914064	8.19571359398395	8.02582552194057	7.70831693138654	8.06423259311305	8.07870540308363	7.87754140644829	7.70765133162665	-0.071600616026503	0.704798815025538	0.881450519287043
Merged-chr19-29391445-4	chr19	29391350	29391550	+	976.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19469.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	4.67340341305342	4.75755714766578	4.59315236852135	4.45164399658104	5.05000779896299	4.84736280667676	4.79893349599304	4.41154934212822	0.406782923079092	0.262909247663973	0.574735947525663
Merged-chr4-20008282-5	chr4	20008197	20008397	+	797.840027	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317723)	promoter-TSS (NM_001317723)	-32.0	NM_015767	50500.0	Mm.24375	NM_015767	ENSMUSG00000073988	Ttpa	alpha-TTP	tocopherol (alpha) transfer protein	protein-coding	4.01405933343302	3.90920438273219	4.45670626123633	4.472002078344	3.92736623114517	4.42583233982473	4.04927511297498	4.33660332763206	-0.130343048861661	0.772266762377244	0.910810383351782
Merged-chr8-84689226-4	chr8	84689091	84689291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164560)	promoter-TSS (NM_001164560)	-56.0	NM_001164559	212528.0	Mm.275720	NM_198020	ENSMUSG00000001909	Trmt1	6720406L13Rik|6720477L24|D8Ertd812e	tRNA methyltransferase 1	protein-coding	6.23439490711853	6.37640150698538	5.74611891157199	6.16654033342626	6.07059240805086	6.07629267592857	5.91630925559973	6.15508867718411	-0.152499158766452	0.545075698835458	0.795757305099045
Merged-chr11-43656688-4	chr11	43656594	43656794	+	912.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25304.0	NM_027557	70802.0	Mm.397449	NM_027557	ENSMUSG00000044950	Pwwp2a	4631424J17Rik|AI891583|AU024105|D930040F23Rik	PWWP domain containing 2A	protein-coding	4.46126674444863	4.98759490331222	4.92290097680214	4.90278050509748	4.42619133117374	4.68375666312293	4.61328938431403	4.59069297999384	-0.570249037679945	0.112299390816048	0.370457354539345
Merged-chr15-99122634-7	chr15	99122550	99122750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-4195.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	5.36606305400627	5.62190291746882	5.47891535265769	4.42444371057236	5.47253536375179	5.57061432860281	5.28052792913311	5.4203503049312	0.262094364262325	0.487921858491691	0.76110740386327
Merged-chr14-60432340-3	chr14	60432176	60432376	+	896.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	53990.0	NM_001164705	72125.0	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	3.00207862630672	2.84451477388645	2.72312403762168	2.76906435560539	2.86638588090834	3.29461865633897	3.27053393992131	3.3330216300572	1.50335025416526	0.0135356167477445	0.0977115455265823
Merged-chr4-41614327-4	chr4	41614236	41614436	+	920.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175138, exon 11 of 20)	exon (NM_175138, exon 11 of 20)	25966.0	NM_027147	69638.0	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	4.64193279453966	4.88522162805735	4.41651147618146	4.99604577686858	4.84977758485419	4.73366731453371	4.73923217346839	5.02968381973118	0.144294320325807	0.688775747784295	0.872980495973815
Merged-chr4-40963155-4	chr4	40963073	40963273	+	877.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029814, intron 7 of 7)	MTC|LTR|ERVL-MaLR	-7733.0	NM_001290449	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	4.00324910055409	3.70951812184015	4.18006613728309	4.23906888224524	3.8948241786808	3.46166915392959	3.78454847011023	4.33145747766206	-0.391332846104907	0.447744756245309	0.733267929153185
Merged-chr1-34602586-3	chr1	34602465	34602665	+	633.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22872.0	NM_213727	211383.0	Mm.330696	NM_213727	ENSMUSG00000045174	Amer3	9430069J07Rik|Fam123c	APC membrane recruitment 3	protein-coding	3.32313746826959	3.15928208600422	3.44755904759948	3.29333286315842	3.79946512527608	3.93003296302028	3.87554304784746	3.38523684562177	1.47330777395967	0.00406562637309615	0.0405645107388017
Merged-chr5-31220695-4	chr5	31220614	31220814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008014)	promoter-TSS (NM_008014)	-169.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	8.19195540948194	7.9778990925862	7.9710804440195	7.79762451741562	8.11723102504349	8.05487092533617	7.95348344754904	8.08490738116579	0.0926544571801549	0.583058675523611	0.816904287158464
Merged-chr5-5409886-4	chr5	5409803	5410003	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER45B|DNA|hAT-Tip100	-29652.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	3.35930474931751	3.83427303023671	3.61071180771635	3.93471038877422	3.93951174351089	3.78425134187445	3.8979580915078	3.66476063957807	0.323332335522139	0.518225405882261	0.779393340494163
Merged-chr19-30032448-4	chr19	30032352	30032552	+	830.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144873, intron 1 of 15)	intron (NM_144873, intron 1 of 15)	1939.0	NM_144873	109113.0	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	3.9576949965547	4.07551724998066	4.26300128253664	3.55130992364784	4.06714435089793	3.97821002253072	3.78669322033533	3.95591260926411	-0.0587900189546674	0.901678348681491	0.963512981051176
Merged-chr9-105139393-4	chr9	105139308	105139508	+	924.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5674.0	NM_028562	73532.0	Mm.23516	NM_028562	ENSMUSG00000032566	1700080E11Rik	AI429110|Tseg8	RIKEN cDNA 1700080E11 gene	protein-coding	4.29066367765227	4.15284282359343	4.05347039388175	4.31422793963969	4.58706803493502	4.0094960267663	4.50646453561603	4.15144075672103	0.322789501824065	0.43984463315987	0.727425871224001
Merged-chr7-100176504-4	chr7	100176397	100176597	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190869)	promoter-TSS (NM_001190869)	-173.0	NM_001190869	57442.0	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	5.12967743995068	4.97812902327497	4.89686181808307	5.38879072796849	5.01905287597648	4.54748002986076	4.90938173550393	4.89360649876219	-0.520635182009127	0.131838664058113	0.404210211448674
Merged-chr5-151057189-4	chr5	151057086	151057286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153382, intron 7 of 13)	intron (NR_153382, intron 7 of 13)	104579.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	7.3134806156449	7.1946030384509	7.35518567671487	7.57358836414296	7.25445811380598	7.05467239355849	7.47669197860228	6.95595229678429	-0.230353147280099	0.265076504858682	0.576956662317123
Merged-chr4-95846582-3	chr4	95846487	95846687	+	760.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 13 of 15)	intron (NM_001113412, intron 13 of 15)	120448.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	3.73209186427074	3.93652758193771	3.93681076273201	4.21651483258282	3.39021510094764	3.79521144728827	3.77145392838861	4.02532675181112	-0.629030541397568	0.206394316292477	0.510336164002841
Merged-chr4-155694266-3	chr4	155694162	155694362	+	942.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178699)	promoter-TSS (NM_178699)	-80.0	NM_178699	230991.0	Mm.29083	NM_178699	ENSMUSG00000074738	Fndc10	B930041F14Rik|MNCb-3966	fibronectin type III domain containing 10	protein-coding	4.1241535933432	4.30451281673256	4.16897596091631	4.27635769786337	4.039267778528	3.82233801865639	3.91510184283766	3.87540338430516	-0.808433971280014	0.0561082980863317	0.247950117929286
Merged-chr4-48108825-4	chr4	48108720	48108920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16099.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	5.77877944485748	5.87381333990044	5.64723470841636	6.52702763866458	5.95032178028748	5.95628655105461	5.64625949035569	5.91832554555676	-0.247389457121418	0.419417334832076	0.712515966395674
Merged-chr15-95822196-4	chr15	95822074	95822274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	7898.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	8.09001729383455	8.3585788587908	8.21325927521663	8.08514645480535	8.17564986889917	8.09029193334433	7.98053164731324	7.86225079386085	-0.196397324979503	0.244379999461338	0.555571726234672
Merged-chr16-23305913-4	chr16	23305808	23306008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	15438.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	5.86298544924656	6.13065312270787	6.16410074030822	6.4503363742919	5.54473426485907	5.65303957760021	6.18806581980575	6.01865288389175	-0.488581291160375	0.0858780495311263	0.319251772474855
Merged-chr3-108382526-4	chr3	108382401	108382601	+	871.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040560, exon 2 of 3)	non-coding (NR_040560, exon 2 of 3)	1240.0	NR_040560	100038453.0	Mm.214328	NR_040560	ENSMUSG00000074281	Gm12522	-	predicted gene 12522	ncRNA	3.65532048901047	4.12366947995125	3.87035449004107	3.35459101650654	3.96448461380683	3.99279307858241	3.80392263080145	3.81768585093909	0.352415361734258	0.480411500664448	0.755947743876719
Merged-chr12-116047672-4	chr12	116047572	116047772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004066)	promoter-TSS (NM_001004066)	-52.0	NM_001004066	56220.0	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	8.64641135373827	8.78729475006397	8.74342241681888	8.78957160538369	8.79155240913295	8.75091315642558	8.84950970736789	8.63775094380781	0.0192055901505723	0.89404992727271	0.960481560907683
Merged-chr12-3862365-3	chr12	3862271	3862471	+	895.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045884)	promoter-TSS (NR_045884)	-127.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	3.77770663203386	3.67954248003709	3.72680353411482	3.93959725701023	3.77916286927509	3.73394567935434	3.90385178599705	3.55720125878176	-0.130342202862313	0.779385077355519	0.91394323833457
Merged-chr17-87255858-4	chr17	87255760	87255960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_139295, exon 4 of 4)	3' UTR (NM_139295, exon 4 of 4)	10087.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	7.8858245188752	7.88159356408655	8.45382660267186	8.36778054692752	7.20756152535341	6.73718024326833	7.55806853577045	7.18584563857439	-1.27304118485941	7.60906680135363e-08	3.33501087348245e-06
Merged-chr6-108341327-3	chr6	108341229	108341429	+	960.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 5 of 61)	intron (NM_010585, intron 5 of 61)	128233.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	4.41590091632983	4.27689586822667	4.41666657490222	4.70312440777966	3.3264154624638	3.63399826863552	3.42726866638607	3.82709313007953	-2.77478507467191	1.30018462485371e-07	5.44707718731386e-06
Merged-chr7-30588365-2	chr7	30588257	30588457	+	1000.0	f0_balb.idr|f0_c57.idr	exon (NM_001290573, exon 1 of 37)	exon (NM_001290573, exon 1 of 37)	369.0	NM_001290573	75410.0	Mm.168688	NM_029274	ENSMUSG00000006307	Kmt2b	2610014H22Rik|Mll2|Wbp7|mKIAA0304	lysine (K)-specific methyltransferase 2B	protein-coding	4.53707203569215	4.30582746696941	4.53779473394324	4.5545710432953	4.39926735460982	4.86854556374598	4.4744089008646	5.12933944693202	0.551081911620539	0.15795778443703	0.444802482717813
Merged-chr13-114071660-4	chr13	114071582	114071782	+	829.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 4 of 4)	L1MA4|LINE|L1	79910.0	NR_045836	319803.0	Mm.386896	NM_177004	ENSMUSG00000114213	A430090L17Rik	-	RIKEN cDNA A430090L17 gene	ncRNA	3.5286039255797	3.41349925689283	3.69760128684949	3.87008342533906	3.96170375771868	3.76107515174364	3.73381087530579	3.79664255223859	0.492469504584981	0.31301607778679	0.624917157063527
Merged-chr2-12314189-4	chr2	12314091	12314291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12247.0	NM_001001309	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	7.01895399131697	7.09592691558992	7.35115773623727	7.29104327737461	7.46144498814354	7.08946541674281	7.74188606522169	7.30528446403019	0.303093313502035	0.150698182141939	0.433535927034237
Merged-chr7-118705764-4	chr7	118705666	118705866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019580)	promoter-TSS (NM_019580)	-28.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	6.86709740561556	6.91174489294614	6.73687888424697	6.84584174498866	7.22661466412416	7.1764289407645	7.14922387674159	7.05583996934431	0.432402068909534	0.0200956847065036	0.128458979948291
Merged-chr17-7897949-4	chr17	7897856	7898056	+	982.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28044.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	5.0746969510328	4.98961502359119	4.93726031078556	5.10903372837872	5.18927175999242	5.11173126574055	4.83935574501813	5.13589345742306	0.0862686968025942	0.780903198530001	0.914720547150824
Merged-chr13-89892316-3	chr13	89892227	89892427	+	887.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028012, intron 7 of 7)	L1_Mur2|LINE|L1	-149815.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	4.29919128745154	3.99592972372528	4.73982621806128	4.58822736353153	4.1298800798072	4.42853271266414	4.04285507331095	3.94756982671495	-0.710798772847594	0.108517437048007	0.363575554325258
Merged-chr16-91385754-4	chr16	91385666	91385866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 3 of 7)	intron (NM_001347258, intron 3 of 7)	12983.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	6.96822807841325	7.01098500269879	6.76842887508396	6.94334403025151	6.76249588447149	6.82346313624092	6.83148745902037	6.70427118527981	-0.209418807988328	0.280541535284866	0.592559599395872
Merged-chr16-38460299-4	chr16	38460180	38460380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359898, intron 1 of 5)	intron (NM_001359898, intron 1 of 5)	1347.0	NM_009855	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	5.62120445229283	5.53165241965245	5.5712674853532	5.22691623982407	5.02046493567977	5.52065057231057	5.54303338364691	5.78153543836657	0.000495033231639339	0.998746948545163	0.999449015879545
Merged-chr9-50552405-4	chr9	50552296	50552496	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133217, intron 1 of 11)	intron (NM_133217, intron 1 of 11)	1266.0	NM_001359610	170752.0	Mm.390149	NM_133217	ENSMUSG00000032066	Bco2	B-diox-II|Bcdo2|Bcmo2|CMO2	beta-carotene oxygenase 2	protein-coding	5.08052996966919	5.13181337488706	4.72260219885777	4.78474180681292	5.00269086191283	4.85806351994223	5.02501971645116	4.87517216505473	0.0238049335845386	0.942254580550922	0.979062797089676
Merged-chr7-16239877-4	chr7	16239760	16239960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176912, intron 1 of 1)	intron (NM_176912, intron 1 of 1)	2471.0	NM_001146005	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	4.94669462288678	4.84877775333967	5.07889950623558	5.11859208465476	4.98461614294126	4.89704786765713	4.69931119456206	4.87309796658587	-0.272516418542773	0.399760888163569	0.697861775510926
Merged-chr8-85408298-4	chr8	85408185	85408385	+	966.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025722)	TTS (NM_025722)	24556.0	NR_033144	66714.0	Mm.272748	NM_025722	ENSMUSG00000036934	4921524J17Rik	-	RIKEN cDNA 4921524J17 gene	protein-coding	5.52165778033759	4.95670315493445	5.19415307572426	4.93113728946092	5.16489779318737	5.27159169218802	4.85329142401781	5.36537939249959	0.0333096783980404	0.920713374716453	0.970622451442445
Merged-chr18-80464916-4	chr18	80464827	80465027	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 1 of 12)	RLTR12B|LTR|ERVK	4740.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	5.70381819394463	5.73358339689104	5.43807263694989	5.02205600200289	5.64551641217183	6.09670800300487	5.43990484929462	5.34210787242209	0.288005148561987	0.38799158709339	0.688790151530853
Merged-chr7-90457225-4	chr7	90457105	90457305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025460)	promoter-TSS (NM_025460)	3.0	NM_025460	66271.0	Mm.28963	NM_025460	ENSMUSG00000030615	Tmem126a	1810020E01Rik	transmembrane protein 126A	protein-coding	7.50093101814237	7.39742856247924	7.17247252952026	7.5429164873948	7.55675946006543	7.30205340453076	7.43778327582715	7.26922893255361	-0.0211136510057459	0.911072094883129	0.966904162861598
Merged-chr4-149843093-4	chr4	149843008	149843208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-68841.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	6.54124575670705	6.37649566109788	6.47686882389865	6.57666162644891	6.30126158579077	6.52975363216796	6.63000996849537	6.38526793744339	-0.0573113770843339	0.791770867265486	0.919290448094425
Merged-chr11-114653857-4	chr11	114653755	114653955	+	986.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14688.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	5.16379475399135	4.98393299168956	4.8163601649037	4.85269444430958	5.12639224794908	5.17594892744838	5.07720658508368	5.09872205915514	0.324870001616842	0.292043416097597	0.604488172040016
Merged-chr13-113869438-4	chr13	113869327	113869527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	74919.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	6.08037562829102	6.26905508792809	6.33819535052738	6.6918845341645	6.0900206633583	6.02103527229832	6.53260594671722	6.18203764465682	-0.243694787598651	0.351621899198442	0.658910409408162
Merged-chr15-59081385-6	chr15	59081293	59081493	+	836.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 1 of 14)	CpG	633.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	4.34004031808797	4.12018035795399	4.382142825888	4.19343099724959	4.22580519811652	4.42561444980276	4.04290570937969	4.41936001093697	0.0690892661996291	0.861790661266604	0.947840559332101
Merged-chr16-90461534-4	chr16	90461430	90461630	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 4 of 10)	intron (NM_015755, intron 4 of 10)	75133.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	4.82826349040843	5.32935734297279	4.90260777694516	4.96107454118632	4.66235825968779	4.80302018091618	4.84319443420843	4.9687727091753	-0.409752316804544	0.226018197048158	0.534601871393655
Merged-chr11-8709747-4	chr11	8709635	8709835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD1|LINE|L1	-45200.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	6.35935713235591	6.49684810841662	5.91612071586862	6.19921743306009	6.65875757349922	6.42493932482087	6.21659000402089	6.44206808910608	0.286281274131468	0.241638288084677	0.552135459779116
Merged-chr2-158175646-4	chr2	158175539	158175739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16369.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	8.4038983574511	8.66832021218782	8.48764326952619	8.63974201031942	8.42502013483723	8.55030939675536	8.71217947234862	8.52628771266136	-0.00465184103314003	0.976493794951877	0.991566712282689
Merged-chr11-119267934-4	chr11	119267844	119268044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159324)	promoter-TSS (NM_001159324)	-19.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	6.6130316784991	6.67434321240336	6.28618309617781	6.34705344100914	6.79432685701918	6.38285055598015	6.29266740722129	6.65421825676044	0.1041834335573	0.661753370832777	0.859558444177927
Merged-chr11-69059219-1	chr11	69059119	69059319	+	1000.0	f0_c57.idr	promoter-TSS (NM_028005)	promoter-TSS (NM_028005)	-556.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	5.45807186164621	6.2978679967698	5.07893222473251	3.8057680889102	5.84518527034486	6.69464959545584	5.74702662290624	5.39357718204062	0.853449179220515	0.318235668231013	0.630081551669701
Merged-chr5-99234632-4	chr5	99234524	99234724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145839, exon 5 of 14)	exon (NM_145839, exon 5 of 14)	18303.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.50038148834041	6.87846288802323	6.42976094502438	6.9222736404062	6.68360569219713	6.97164210364833	6.85389159906239	6.44348251472813	0.0484311073648523	0.838469336998133	0.938734869008585
Merged-chr17-57248490-4	chr17	57248368	57248568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134125)	promoter-TSS (NM_134125)	-779.0	NM_030084	78308.0	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding	6.32409944083667	6.58008667037862	5.57089493076099	6.06394260992387	6.00112050312907	6.23353270607977	5.98344368719848	5.98769674239338	-0.206387812324238	0.474170880501397	0.751607118426792
Merged-chr3-127754496-2	chr3	127754398	127754598	+	632.25	f0_balb.idr|f1_balb.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	26029.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	3.01472029424789	3.11550305881727	3.34823878659534	3.8222832560429	2.56907757334221	2.76531592259896	2.65002997451105	2.94891070803188	-3.13121643591827	0.000112993731154668	0.0022484710063903
Merged-chr4-150566384-4	chr4	150566295	150566495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	85779.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	7.6343217604141	7.27991833130583	7.37112546041246	7.81518448762297	7.31058101174324	7.29055336232563	7.41297498091129	7.45419783447165	-0.248035186008049	0.213849770098775	0.519418016486679
Merged-chr11-60769622-4	chr11	60769530	60769730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009410, intron 1 of 18)	MTA_Mm|LTR|ERVL-MaLR	7735.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	7.35448304690554	7.27295872977899	7.42987325913841	6.35107076937335	7.21078046648361	6.94829918339645	7.11253615840658	6.79523527221903	-0.176551944142818	0.519762258480887	0.780295653015228
Merged-chr5-147861454-1	chr5	147861354	147861554	+	541.0	f0_balb.idr	intron (NM_025624, intron 1 of 5)	intron (NM_025624, intron 1 of 5)	826.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	3.99225252583127	4.35672609593533	3.6615058431815	3.85376758726613	4.24418211767757	3.90204455496978	4.15545005664635	3.88913882282568	0.19263771028524	0.679622427178789	0.868562901473288
Merged-chr1-152424940-4	chr1	152424859	152425059	+	833.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177756, intron 1 of 11)	intron (NM_177756, intron 1 of 11)	25092.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	4.15585794669798	4.15779691002208	3.97530020864509	3.96700878575093	3.85971798787953	3.88432583079981	4.13755218433462	3.70397638938368	-0.432429470549348	0.325269227363154	0.636829810230371
Merged-chr6-125145845-5	chr6	125145776	125145976	+	902.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001302779, exon 1 of 9)	exon (NM_001302779, exon 1 of 9)	652.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	3.52432706670873	3.59195246013531	3.52478785483876	3.40592306210561	3.52890115352885	3.90981450918275	3.62207984107279	3.96378067121951	0.795318109450007	0.100192578000272	0.347391860757046
Merged-chr10-67026085-2	chr10	67025985	67026185	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110511, intron 2 of 6)	ID_B1|SINE|B4	21010.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	5.84065241681822	5.80638562693755	6.0952864977021	6.39716109898324	6.06583740177546	6.35141104457751	6.45371000064136	6.09092691446759	0.258119303540634	0.338428632321896	0.648017142470682
Merged-chr7-100663403-4	chr7	100663270	100663470	+	996.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013746)	promoter-TSS (NM_013746)	-976.0	NM_001163182	27276.0	Mm.491216	NM_013746	ENSMUSG00000030701	Plekhb1	AI315628|PHR1|Phret1|evt-1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding	4.99190973408653	5.32288885854506	4.88419902956638	4.92023953195082	4.81207245378878	4.90233439793582	5.12978336042506	5.18183543459332	-0.0567699861457674	0.863338872433761	0.948590620866332
Merged-chr18-32173107-3	chr18	32173021	32173221	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011946, intron 1 of 16)	intron (NM_011946, intron 1 of 16)	10032.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	3.4642355453172	3.24060093120842	3.35440042054171	3.51531432538882	3.43079161243678	3.21083251736946	3.34201838922092	3.61180433608381	0.0171779946976903	0.974012365924915	0.99070761752982
Merged-chr2-164856893-2	chr2	164856793	164856993	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011125, exon 2 of 16)	exon (NM_011125, exon 2 of 16)	815.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	3.24091040126533	3.39204238218794	3.47560563129665	3.30052797794334	3.2542454395807	3.5918133878786	3.35105399794075	3.67141687079311	0.412654369502586	0.428904755738028	0.719857371117313
Merged-chr3-145692269-4	chr3	145692145	145692345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42260.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	7.38571220648202	6.8741236706653	7.5074486764917	7.79398760723733	6.9233003973894	7.0994483308078	7.23873172586365	7.42014888698269	-0.351564747387955	0.149512322667508	0.431777928290641
Merged-chr1-37586314-4	chr1	37586235	37586435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45319.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	7.65478522886588	7.28435578410883	7.35276504012384	7.293171105519	7.41415772408639	7.48873848724576	6.99689345781759	7.22025347831032	-0.139145402853596	0.493583038159133	0.764353560898289
Merged-chr11-118353767-4	chr11	118353654	118353854	+	985.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011594, intron 1 of 4)	intron (NM_011594, intron 1 of 4)	1657.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	5.22144450080608	5.06227826767222	5.48965225446093	5.33343893221069	4.9192829179548	5.13398829008641	4.89745686787348	4.66918115196713	-0.714998595709656	0.0265782482416705	0.154698923182097
Merged-chr6-113077308-4	chr6	113077196	113077396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027008)	promoter-TSS (NR_027008)	-52.0	NR_027008	14910.0	Mm.280950	NR_027008	ENSMUSG00000086429	Gt(ROSA)26Sor	AV258896|Gtrgeo26|Gtrosa26|R26|ROSA26|Thumpd3as1	gene trap ROSA 26, Philippe Soriano	ncRNA	8.27707331258441	8.6188146497136	8.43048282060449	8.07740562224314	8.4701353215681	8.62360109300973	8.5356709990306	8.18322275434325	0.128036153212247	0.494224601849003	0.764931025571554
Merged-chr18-34378595-3	chr18	34378497	34378697	+	916.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-5182.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	3.86496485243509	4.23465542568283	3.59368031670348	3.95361910214596	3.54928464950605	3.58394154682561	3.74827439935375	4.00227408710823	-0.594845612246429	0.230070617386579	0.539230636272226
Merged-chr11-49203411-4	chr11	49203301	49203501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009562)	promoter-TSS (NM_009562)	-99.0	NM_001024846	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	7.50714715693776	8.0471546031019	7.71618940992849	7.46519054968158	7.98473945468846	8.33750990934873	7.90562971522869	8.01257187445533	0.475233416185446	0.0197750347603807	0.127094103766062
Merged-chr5-135582574-4	chr5	135582480	135582680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-9531.0	NM_001356630	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	6.29945635686702	6.66519344790459	6.35598779129664	6.47003850325491	6.47296158005829	6.47671842980287	6.17074293307503	6.11369129885305	-0.200838052723158	0.38947193426826	0.689744795214979
Merged-chr6-65671633-3	chr6	65671526	65671726	+	848.8444210000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172399)	promoter-TSS (NM_172399)	15.0	NM_172399	68169.0	Mm.52392	NM_172399	ENSMUSG00000049001	Ndnf	A930038C07Rik|epidermacan	neuron-derived neurotrophic factor	protein-coding	4.03587206194615	3.32592098129346	3.99599418328308	3.83463886295188	3.58756885520511	3.55083076067149	3.59912638246752	3.49505537905498	-0.814295321637891	0.117924842179935	0.379892984408118
Merged-chr10-96901324-4	chr10	96901207	96901407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-134461.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	4.90661558244993	4.83896326439542	5.0074967537818	4.94201045846925	4.8997017015339	4.48339690822055	5.0449691984735	4.71775603594585	-0.231299628018238	0.496159648957102	0.766143432252637
Merged-chr11-32534132-4	chr11	32534038	32534238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	872.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	6.24963086390709	6.37655600328022	6.56749268626761	6.60555127859077	6.164235972305	5.80924895544113	6.03629162350426	6.08468512637947	-0.64871910353274	0.00644694658469504	0.0572392679246611
Merged-chr15-59860930-4	chr15	59860803	59861003	+	861.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65944.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	4.3213309349098	4.38984230892149	4.52110091601612	4.16945294046313	4.29269161148366	4.2096605385594	4.42498377707373	4.13400207351258	-0.17775058578657	0.651791237956645	0.854186462869977
Merged-chr9-7270229-3	chr9	7270109	7270309	+	752.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2305.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	3.06650211592544	2.96105740318269	3.06690096291875	3.56744705621762	2.80076796244705	2.76534445159369	3.11158738620833	2.80884316272505	-1.37092355262171	0.0405862358821774	0.203608160496785
Merged-chr3-83080939-4	chr3	83080841	83081041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	25403.0	NM_016784	53317.0	Mm.286349	NM_016784	ENSMUSG00000027998	Plrg1	AA958940|C80566|Tango4	pleiotropic regulator 1	protein-coding	5.46761102501537	5.83408540542821	5.21434368110789	5.79860035008958	5.24708143019961	5.52483636383177	5.5767578881735	5.77023534793057	-0.140387957124441	0.647108077616913	0.851605116430591
Merged-chr6-149101505-4	chr6	149101355	149101555	+	787.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177192, exon 1 of 21)	5' UTR (NM_177192, exon 1 of 21)	225.0	NM_177192	320560.0	Mm.426874	NM_177192	ENSMUSG00000030313	Dennd5b	9330160C06Rik|AI852444|D030011O10Rik|Gm17524	DENN/MADD domain containing 5B	protein-coding	3.36564566417387	3.4517921375743	3.82340300204714	3.29382893912428	3.4974838362196	3.4175890850335	3.46910726148312	3.63791341514286	0.0609427954708396	0.906681269387109	0.965374636270914
Merged-chr10-25268680-4	chr10	25268602	25268802	+	993.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 4 of 7)	intron (NM_018747, intron 4 of 7)	30461.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	5.04179186631452	5.18216427995698	4.93186558641449	5.39521934862764	5.3194715088615	5.14631847441583	5.27187608179443	5.20472408574883	0.127857996546228	0.680028472177033	0.868593041138696
Merged-chr1-53791821-4	chr1	53791724	53791924	+	842.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6609.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	3.92693522729223	4.11547657842199	3.73114127962066	3.61449059588954	3.8093176162363	3.73846908068534	3.4877786581791	3.72903978078253	-0.457863781849607	0.348005390265736	0.655881475195933
Merged-chr7-38002269-3	chr7	38002179	38002379	+	640.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011274, intron 1 of 10)	intron (NM_011274, intron 1 of 10)	17273.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	3.40662126050173	3.49378259632676	3.40709865498111	3.63644558480965	2.97037095225714	2.99990308182245	3.39329382147986	3.23469483826292	-1.27773233082493	0.0270621447227355	0.156478992625474
Merged-chr11-47776051-1	chr11	47775951	47776151	+	607.0	f0_balb.idr	Intergenic	Intergenic	-396749.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	3.38182114764412	3.51010497236406	3.78904882001814	3.46611332968612	3.51064521589095	3.61227728670997	3.58809143977976	3.2562579570963	-0.142172117140531	0.782073740905998	0.915222792194418
Merged-chr5-122146497-4	chr5	122146410	122146610	+	994.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8448.0	NM_183307	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	5.78307490946749	5.65337331291005	5.5841847762104	5.32946599316495	5.66234747349396	5.83779572572686	5.07237699099246	6.10349887647746	0.219441976755341	0.497817585139557	0.767238824975067
Merged-chr14-120762395-4	chr14	120762233	120762433	+	977.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148861.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	6.05129701215531	5.31099501625432	5.84656166770398	6.45493274980361	5.81140832014564	5.04232393614218	5.33561974713048	5.48294679411972	-0.87945908443196	0.0144806284759021	0.102310921767904
Merged-chr18-38409968-4	chr18	38409818	38410018	+	869.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8989.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	4.17566312731258	4.09785851801251	3.75622083968272	3.8087441494768	3.82923041548384	4.03421841718261	3.74152391259259	3.63911430013159	-0.41860936512947	0.368070671707285	0.672560002604426
Merged-chr5-117614484-2	chr5	117614384	117614584	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 4 of 19)	intron (NM_001312914, intron 4 of 19)	200482.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	2.50171809760183	2.49862165464871	2.34625913678917	2.34841824004933	2.94120768860467	2.75025492301203	2.75755050968108	2.98782748105813	2.32386240070298	0.000650131797565133	0.0095119694180655
Merged-chr9-59295466-4	chr9	59295358	59295558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359282, intron 1 of 6)	intron (NM_001359282, intron 1 of 6)	3886.0	NM_028121	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	5.80165102266647	6.39587786980681	5.57770696581837	5.03805013940998	6.06625996219038	5.69986694068632	5.46505730857391	4.86705312871109	-0.35093356491689	0.565765240315705	0.807745893862163
Merged-chr15-59375062-4	chr15	59374993	59375193	+	694.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153548)	promoter-TSS (NM_153548)	895.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	3.58313226225335	3.34603832202366	3.7782012459252	3.27314197290633	3.06548313264099	3.47201021479154	3.40267169468339	3.94374623893063	0.00993255697125618	0.986449039035891	0.995010290574724
Merged-chr10-42876348-3	chr10	42876247	42876447	+	798.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359265, intron 1 of 6)	intron (NM_001359265, intron 1 of 6)	15835.0	NM_001359264	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	3.49235116750498	3.6142504493735	3.59429177980865	3.55887279066096	3.39926515420674	3.30831622077439	3.31204288320455	3.1960668100699	-0.897122684078172	0.0840226969013949	0.31522698750799
Merged-chr5-137831714-4	chr5	137831616	137831816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153510, intron 2 of 6)	MLTR14|LTR|ERV1	4562.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	6.33848471953329	6.26195751489242	6.0514334427416	6.36656915883265	5.80282589255766	5.94078276613491	6.21868328517262	6.08953981536204	-0.391176419278181	0.107450975928017	0.36156824164801
Merged-chr5-75143461-5	chr5	75143395	75143595	+	781.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045792, intron 3 of 3)	intron (NR_045792, intron 3 of 3)	-8756.0	NR_144636	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	3.42929539370131	3.5972362156371	3.54399757098545	3.90110202661239	3.55362592943337	3.48123049595833	3.58326601934764	3.54209943816072	-0.341135999055684	0.500450446759524	0.768850577358824
Merged-chr16-21695500-4	chr16	21695468	21695668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001881)	promoter-TSS (NM_001001881)	-903.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	5.12870788530617	5.34828132752585	5.54572605806457	5.06237357441605	5.25224433488946	5.27106769663936	4.85312145447766	4.79036866141086	-0.390750140745702	0.243157130040453	0.554129517805898
Merged-chr11-75585307-4	chr11	75585203	75585403	+	909.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2776.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	5.07944799040974	5.11476103062954	5.1734405817529	5.45784292312855	4.58481902989209	4.88852126039692	4.50578325444742	5.1395835034699	-0.847576367004931	0.0158117929201517	0.108865577367754
Merged-chr8-117371442-4	chr8	117371327	117371527	+	856.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	22257.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	3.81243678688744	3.67586406462205	4.10588460337907	4.45426289560787	4.09643453398277	3.69132739621078	3.99812440403477	3.91591689364048	-0.335935752605595	0.500065288484064	0.768689065306277
Merged-chr9-66919769-4	chr9	66919693	66919893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173413)	promoter-TSS (NM_173413)	-88.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	7.33441969929558	7.82764762788053	7.42868669765204	7.46281954366837	7.58306540149437	7.799362679655	7.77394100254867	7.51937104821045	0.188242731497888	0.328888365865415	0.640144325858488
Merged-chr11-3198742-7	chr11	3198761	3198961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-3492.0	NM_001166548	74203.0	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	6.49995552939284	6.11313892947316	6.06955380880605	5.66265818985661	6.55146838913546	6.41374580395212	6.35183313724523	6.79183887649743	0.655372154540841	0.0150156483202997	0.104897323759998
Merged-chr15-12230371-4	chr15	12230280	12230480	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 2 of 15)	intron (NM_001356498, intron 2 of 15)	25352.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	4.75684947749413	5.43380802896035	4.9553191867171	5.057872069392	5.00506955238898	4.97839690558121	5.03627473005315	5.458575325294	0.100835789324209	0.768428124379198	0.909356419531329
Merged-chr6-121077357-4	chr6	121077217	121077417	+	823.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270475, intron 1 of 31)	intron (NM_001270475, intron 1 of 31)	4310.0	NM_153396	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	3.41917734198662	3.66798060581851	3.817187442052	3.71002019855528	3.91415218903101	3.98623278360063	3.59127560103833	3.86287350285294	0.538797321020083	0.254715447442713	0.566151176984747
Merged-chr11-25358269-1	chr11	25358169	25358369	+	789.0	f0_balb.idr	intron (NR_045853, intron 5 of 7)	intron (NR_045853, intron 5 of 7)	32162.0	NR_045853	71234.0	Mm.158627	NR_045853	ENSMUSG00000033015	4933427E13Rik	-	RIKEN cDNA 4933427E13 gene	ncRNA	2.79266919296992	2.63609441972454	2.90166517466419	3.02586729554264	2.26733576223942	2.33853741408219	2.46613893808607	2.39772611677617	-3.25853812056966	0.000376816490165902	0.00612361208984446
Merged-chr2-152227365-1	chr2	152227265	152227465	+	1000.0	f0_c57.idr	intron (NM_007788, intron 1 of 12)	CpG	525.0	NM_007788	12995.0	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	CK2|Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	5.23245307428292	5.62035054805459	5.64841950843677	5.53195030965253	5.73971516356063	5.63347830874449	5.76217550275281	5.59283796521558	0.280023897531155	0.297472300099544	0.60959811276517
Merged-chr10-94992277-4	chr10	94992110	94992310	+	802.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47632.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	2.63652633275176	2.76011349921336	2.78201327608674	2.72292166105559	3.05009179366735	3.3074048130977	2.90264951410884	3.03089191828503	1.53420821080448	0.0122932378444481	0.0914432413554158
Merged-chr4-46411748-3	chr4	46411654	46411854	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7571.0	NM_053149	93966.0	Mm.25793	NM_053149	ENSMUSG00000028332	Hemgn	4921524M03Rik|AI317176|EDAG|Hgn|mNDR	hemogen	protein-coding	3.80181536338939	3.76199838415133	3.65842486608218	3.70902839798816	3.40948482267637	3.4239151341945	3.59208774391599	3.37383440402228	-0.927843195162366	0.0596802152740782	0.257593999904409
Merged-chr15-66103570-4	chr15	66103452	66103652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	-126748.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	5.50324833311347	5.17443104724914	5.11448805962763	5.56900961172535	5.39503774427546	5.32413629329142	5.18989390999509	5.39283685099478	-0.0720197480719408	0.810933822302642	0.926854276252049
Merged-chr1-82840158-3	chr1	82840057	82840257	+	842.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310713, intron 1 of 11)	CpG	697.0	NM_001347077	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	3.37099434668971	3.42242884902388	3.84723229386917	3.60686184606414	3.37201675548594	3.54940760698258	3.73922624538776	3.79992915327286	0.145815925305843	0.776428458004565	0.912932991254018
Merged-chr15-6568005-4	chr15	6567905	6568105	+	991.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-11842.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	5.73510471447443	5.39748459556718	5.8280660801505	5.76517804023424	5.66189025769149	5.64789375525061	5.70696429093468	5.27840948014391	-0.177339506685078	0.526315815997373	0.783622345407095
Merged-chr8-47947762-3	chr8	47947656	47947856	+	908.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 1 of 22)	intron (NM_133791, intron 1 of 22)	42795.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	3.39268309792962	3.42027576543827	3.83013207058314	3.48494953733196	3.57459334671762	3.31858346211916	3.43643633794538	3.13707143034723	-0.529681605561108	0.333164879843875	0.64399149963087
Merged-chr15-64342645-3	chr15	64342548	64342748	+	790.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 2 of 28)	intron (NM_001276461, intron 2 of 28)	-29975.0	NM_001276463	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	3.5001568444607	3.635603839868	3.38600542599829	3.55874666252434	3.36385261278807	3.37187116501038	3.73168959066008	3.60398720626418	-0.00873667580271237	0.986207842760293	0.994910715477668
Merged-chr12-100396867-4	chr12	100396770	100396970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 9 of 19)	L1MB7|LINE|L1	120261.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	6.22802819118194	6.34825876293564	6.17004419022993	6.41709436046815	6.38118500192198	5.71286217253573	6.37530229556871	6.2052996784779	-0.145517168238697	0.565496571812669	0.807565364947013
Merged-chr3-27188398-4	chr3	27188303	27188503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	5399.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	5.87780310217118	5.6227152920685	5.90113007276231	6.00139258706628	5.57607250019609	5.72386188982703	5.8488855705771	5.87465146873768	-0.183593098496357	0.481612879353525	0.756719381598145
Merged-chr9-70891578-3	chr9	70891474	70891674	+	791.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	43234.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	3.71003144034219	3.29357575004658	3.35868389082836	3.42359739131064	3.40665307371731	3.28356182669938	3.50700191874598	3.23590404285058	-0.304785308658646	0.565192967836994	0.807364033311814
Merged-chr11-61231552-4	chr11	61231450	61231650	+	876.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138545, intron 9 of 10)	intron (NR_138545, intron 9 of 10)	22808.0	NM_001331112	11670.0	Mm.4257	NM_007436	ENSMUSG00000019102	Aldh3a1	Ahd-4|Ahd4|Aldh|Aldh3	aldehyde dehydrogenase family 3, subfamily A1	protein-coding	3.66402485692621	4.21533804716259	3.89644976590243	4.02270734424406	4.10435680841899	3.90744018875577	3.71250674871022	4.60775650349422	0.416125448118458	0.401514104667262	0.699086921946896
Merged-chr2-101777008-2	chr2	101776900	101777100	+	941.166626	f0_c57.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	MIRb|SINE|MIR	20707.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	3.22901615351579	3.34116788739077	3.2293668651805	2.88863211538716	4.52122205765671	4.56486262099464	4.63187340532245	4.49371988783943	4.43588319001543	5.77006189516268e-17	1.27153942921295e-14
Merged-chr8-6114686-1	chr8	6114586	6114786	+	577.5	f0_c57.idr	Intergenic	Intergenic	-1009399.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	2.56409260847173	2.50797041703422	2.56430014760188	2.44892763622879	3.35930768794431	3.45881015369756	3.22027616481844	3.33505713501092	4.1246907917291	4.01858759288863e-07	1.52067541878905e-05
Merged-chr4-43420599-3	chr4	43420518	43420718	+	874.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 2 of 11)	intron (NM_001037709, intron 2 of 11)	8516.0	NM_177377	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	3.34047406805359	3.37041368136213	3.15042144032673	3.1581801016352	3.19663471177478	3.72689786049252	3.44006638827036	3.65248862117335	0.896092507560672	0.095563939907462	0.338453622470034
Merged-chr11-69998250-4	chr11	69998128	69998328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291125, intron 3 of 4)	intron (NM_001291125, intron 3 of 4)	766.0	NM_001291127	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	6.6968117491717	6.84062380947335	6.66719779666966	6.89502133852791	6.97832489148268	6.96236323748267	6.79359188196454	6.69323854146688	0.109584896802155	0.589164032680218	0.820314281173374
Merged-chr14-58075056-1	chr14	58074956	58075156	+	589.0	f0_balb.idr	intron (NM_013518, intron 1 of 2)	CpG	2370.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	3.20034900684648	3.09838465207141	3.2597085718292	3.37843958698925	3.19357618056642	3.4282713731823	3.12892336385935	3.46885183677228	0.231617541806364	0.673826088497429	0.865885561790878
Merged-chr16-91547556-4	chr16	91547454	91547654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008338, intron 1 of 6)	intron (NM_008338, intron 1 of 6)	460.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	6.9407717339496	7.31857532856056	6.6397086126008	6.42632411863254	7.02987789478568	7.09272990961857	6.98099751861424	6.6511231962837	0.112153293207564	0.663363210612209	0.860487488713328
Merged-chr19-53653923-4	chr19	53653816	53654016	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23390.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	5.48916193003443	5.37094475226856	4.98584289077643	5.06429556218588	5.20996027815738	5.46757639702532	5.32614603033583	5.4862395816743	0.247544954752929	0.416739492708178	0.710662693395928
Merged-chr13-117222086-3	chr13	117221980	117222180	+	731.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010330, intron 1 of 8)	intron (NM_010330, intron 1 of 8)	1507.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	3.84791894521535	3.51602334175014	3.69943641703732	4.15090883755115	3.70171981303221	3.70608530346161	3.51832676799091	3.64366183994282	-0.586436574312556	0.243812042599786	0.554822640756105
Merged-chr8-80961384-4	chr8	80961237	80961437	+	891.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	53569.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	3.61470481746676	3.96820272542109	3.78344805058903	4.15655406787367	3.60188925165314	3.79175765795669	3.96085900713149	3.88235836583643	-0.289612003120738	0.546230149079826	0.796283117565136
Merged-chr17-86170598-4	chr17	86170540	86170740	+	661.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	2855.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	3.75197783276234	3.37069485657827	3.43157951105595	3.49082889130962	3.5851233680605	3.66440884523374	3.58749230309778	3.7966064269316	0.456000198551735	0.348334637639422	0.656203091647814
Merged-chr15-53462238-2	chr15	53462138	53462338	+	994.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	-116055.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	2.70655064349657	2.60950618882352	2.81928117462374	2.52462642416484	2.5014124908621	2.3138274464852	2.57484769885889	2.51618575073096	-0.991783691412998	0.167780451981717	0.459695448875569
Merged-chr17-27534876-4	chr17	27534738	27534938	+	948.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21736.0	NM_001166536	15361.0	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	4.30470691446408	4.70915810368603	3.77134880427021	4.25811912084029	4.42378418923872	4.19091438018832	4.69103601322723	3.89413574548332	0.0742538573914846	0.878725263714888	0.954708519232108
Merged-chr16-91073696-4	chr16	91073594	91073794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4549.0	NM_028905	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	5.98377519299584	6.06017726955197	5.71559441201188	6.03054416835937	6.09189368592096	5.59299524583154	6.40870408549364	6.23865015892732	0.248706379679467	0.363032436532715	0.668208368026741
Merged-chr3-104683174-3	chr3	104683089	104683289	+	776.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44525.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	3.42256131541878	3.24229729371543	2.88018542223583	3.39410934927822	2.97031965752264	3.19729514034518	3.19707577495108	3.31869025083857	-0.314329133784898	0.598875631548759	0.826116548064469
Merged-chr4-150837598-4	chr4	150837505	150837705	+	771.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040649, intron 3 of 3)	intron (NR_040649, intron 3 of 3)	-16191.0	NM_001356323	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	4.50540821643132	4.8108570815165	4.26463178721694	3.89065810665693	4.01719700337934	4.25186922567287	4.00507705003358	3.96511190525712	-0.855439011441878	0.066304452284858	0.274452466223768
Merged-chr11-70434603-4	chr11	70434511	70434711	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145429, intron 1 of 14)	intron (NM_145429, intron 1 of 14)	2031.0	NM_001271358	216869.0	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872|Arr3	arrestin, beta 2	protein-coding	4.38553099567585	4.92375470859826	4.38621878267663	4.01489438148276	4.39355834567432	4.32635745365948	4.63847145145339	4.24504835526125	-0.126702033832485	0.771103688528669	0.91036734532567
Merged-chr16-5049258-3	chr16	5049150	5049350	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356320)	promoter-TSS (NM_001356320)	660.0	NM_001359747	74022.0	Mm.21652	NM_028720	ENSMUSG00000022536	Glyr1	2810419J22Rik|3930401K13Rik|AW545332|Npac	glyoxylate reductase 1 homolog (Arabidopsis)	protein-coding	4.91582300772737	4.98045854741201	4.9508046412006	5.07524139303251	4.92452039656011	4.73778963053886	4.66835348920968	4.72743387506038	-0.430175410604139	0.187780245305662	0.486178243317668
Merged-chr12-100883377-4	chr12	100883274	100883474	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177674, intron 2 of 2)	intron (NM_001177674, intron 2 of 2)	16150.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	5.48577697425483	6.00698276473064	5.59317183834506	5.88109645854543	5.16203244839522	5.04139404403224	5.51298801470642	5.05977744759823	-0.978812431135314	0.00136229209684293	0.0172936826729155
Merged-chr1-45926232-1	chr1	45926132	45926332	+	586.0	f0_balb.idr	promoter-TSS (NM_016917)	promoter-TSS (NM_016917)	-638.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	3.56875828772006	3.46698573463167	3.36683051148176	3.22634868615491	3.3026411128411	3.16614799402691	3.17938530622232	3.41898701344015	-0.484624063203091	0.371736214953993	0.675721058891926
Merged-chr14-50925644-4	chr14	50925502	50925702	+	793.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133676)	promoter-TSS (NM_133676)	653.0	NM_009687	11792.0	Mm.203	NM_009687	ENSMUSG00000035960	Apex1	APE|Apex|HAP1|Ref-1	apurinic/apyrimidinic endonuclease 1	protein-coding	3.4792063251148	3.14568859943388	3.53206434124242	3.26648471623729	3.44438329930113	3.35894692800918	3.51727512616575	3.58020105654481	0.417385195591239	0.420057004389757	0.713058060038122
Merged-chr4-111886178-3	chr4	111886073	111886273	+	844.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145551, intron 11 of 14)	intron (NM_145551, intron 11 of 14)	16623.0	NM_145551	230612.0	Mm.26630	NM_145551	ENSMUSG00000028544	Slc5a9	AI159731|SGLT4	solute carrier family 5 (sodium/glucose cotransporter), member 9	protein-coding	3.57193564826221	3.43531549124819	3.88811708389653	3.75456889720553	3.29568500238192	3.2647182189809	3.33715756578339	3.21998103057979	-1.38333902493733	0.0102272606350372	0.0801989847682397
Merged-chr16-49278702-4	chr16	49278605	49278805	+	748.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	221219.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	3.73075891719826	3.54513160194876	3.88863830154571	3.97848626876901	3.49789931183871	3.794402096978	4.21203661688208	4.15234349729769	0.390528283136695	0.440038744135274	0.727527589166698
Merged-chr2-181289241-4	chr2	181289146	181289346	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1280.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	5.85977638176715	5.75710349366162	6.18531116901903	6.10351005950948	6.30208603971511	5.50388135966956	6.19088589051773	6.55644467389005	0.319169727295904	0.282721478656329	0.59488684312637
Merged-chr1-64448199-4	chr1	64448098	64448298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84606.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	5.60380967449446	5.31753373193142	6.17888238659202	5.66079646044027	5.63205967578442	5.54755412352923	5.60298880509161	5.86702266115506	-0.0899094179298854	0.765693029602064	0.908357650317684
Merged-chr7-19281876-3	chr7	19281773	19281973	+	947.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013648)	promoter-TSS (NM_013648)	-751.0	NM_013648	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	4.38584054606559	4.59105583205034	4.01825287864997	3.7950508906105	4.74113132986198	4.88340907162547	4.45462830111471	5.07722260782572	1.2946616400527	0.00251698268545467	0.0279103147792456
Merged-chr9-102982610-4	chr9	102982514	102982714	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-25875.0	NM_033314	24059.0	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	4.68092138577523	4.94794738981673	4.94327962260119	4.8031808538042	4.93417429814566	4.63700550552107	4.85055650948517	5.06808944404184	0.0807787611031992	0.807793918131728	0.925878219331383
Merged-chr19-33366782-3	chr19	33366683	33366883	+	893.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146342, intron 2 of 4)	intron (NM_001146342, intron 2 of 4)	25512.0	NM_001167818	67795.0	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding	3.35499000030176	3.4267708503126	3.41119196519102	3.53236023511967	3.48468875707029	3.21374240986179	3.34316543581878	3.40936959035766	-0.235408760976112	0.649329955020461	0.852690827261032
Merged-chr11-46846141-3	chr11	46846034	46846234	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35335.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	4.98742944154507	5.1746214831558	5.43581568225887	5.61898702756768	4.52579941994506	4.37312602644882	4.3860067110522	4.502880064306	-1.82882240659763	5.84365466734014e-07	2.13196051033626e-05
Merged-chr10-68105416-4	chr10	68105302	68105502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 8 of 9)	(T)n|Simple_repeat|Simple_repeat	125832.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	6.65517878453098	6.69984729651378	6.74618455781648	7.38426458692385	6.56106177529234	6.55851127743232	6.54265176536141	6.71216131105928	-0.476016008455796	0.0564917689110801	0.248947727074804
Merged-chr2-145825854-1	chr2	145825754	145825954	+	643.0	f0_balb.idr	intron (NM_028724, intron 4 of 12)	ID_B1|SINE|B4	39738.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	4.06427509677723	3.94346531090866	3.96716474851558	3.90908527775513	3.9761115778762	3.92667901187966	4.13696981861654	4.42689780409617	0.427410964813509	0.315635353179689	0.627488794659175
Merged-chr19-12782997-4	chr19	12782910	12783110	+	896.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053009, intron 2 of 10)	Lx6|LINE|L1	13113.0	NR_024093	664779.0	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	4.4529215713696	4.15075237516368	4.16030074157784	4.18495953843892	3.76658383557003	4.02436480884925	4.43229798050322	4.37367387487009	-0.171481366813355	0.69772503059528	0.87800480308191
Merged-chr2-158179158-4	chr2	158179066	158179266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12842.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	5.7224634790497	5.37983956258701	6.2442034820073	6.34772138066531	5.87197258237096	5.51724464729617	5.8843806271324	5.71940721688688	-0.374474519880398	0.239879711081203	0.550399004463438
Merged-chr3-108591303-4	chr3	108591184	108591384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358055)	promoter-TSS (NM_001358055)	6.0	NM_001358054	99512.0	Mm.285968	NM_181400	ENSMUSG00000040389	Wdr47	1810073M12Rik|AA552998|mKIAA0893	WD repeat domain 47	protein-coding	7.90015051518801	7.92440955944016	7.97118517372702	8.03626668882834	7.59900159054527	7.89386323671884	8.04289235406979	7.6071503897443	-0.216755437797659	0.228974515285977	0.537900616657055
Merged-chr17-34589963-4	chr17	34589816	34590016	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134116, exon 1 of 4)	5' UTR (NM_134116, exon 1 of 4)	110.0	NM_134116	106512.0	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	4.94217304026019	5.14664855220084	5.37344509705478	5.14049796332983	4.86927079564573	4.92459172051312	4.88261355695803	5.20304466953293	-0.356523210563942	0.263449928021324	0.575464998055295
Merged-chr13-37453340-4	chr13	37453236	37453436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107991.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.76823526143607	6.02478940339843	5.27250518892904	5.65406757882574	5.83309164075423	5.30881071534364	5.37307513168073	5.53996400566099	-0.28390721000089	0.362403831516064	0.66763833432932
Merged-chr5-53402953-4	chr5	53402824	53403024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135818.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	7.41872122533797	7.38373923604197	7.86171206412625	7.76807187057321	7.53079014028178	7.86254265346407	7.72727087057197	7.85639648088683	0.153013896100792	0.43835082143247	0.72634167615479
Merged-chr12-82225961-4	chr12	82225850	82226050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	55934.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	8.73030568434372	8.80760189510591	8.64296247529064	8.84738633317472	8.83598613744139	8.94754301679122	8.98067869010151	8.90524537688144	0.190811693619805	0.183054902910243	0.479931670936247
Merged-chr7-25386289-4	chr7	25386173	25386373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_073028)	TTS (NR_073028)	3839.0	NM_001039507	16890.0	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	5.40024874678399	5.07332880346205	4.75807400040782	5.50787375239403	5.33889417042833	4.93902561774735	5.1431101499001	5.19644956811931	-0.117949379807522	0.730214315228795	0.893000516342052
Merged-chr11-101009468-4	chr11	101009388	101009588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243051)	promoter-TSS (NM_001243051)	36.0	NM_001243051	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	7.13148816207502	7.53388367764177	6.64529771258675	7.18412063409632	7.28726537273725	7.13706442564945	7.01363073621148	7.06864347126583	-0.0446526671977342	0.8472159426032	0.9422142432572
Merged-chr9-96504245-4	chr9	96504161	96504361	+	802.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-25586.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	3.55878447112103	3.49295363668205	3.67480345991029	4.21564169182982	3.70098656237536	3.4801237168575	3.95221007504501	4.05242679083191	0.0824519152698272	0.880033434944561	0.955065788432447
Merged-chr18-74213068-3	chr18	74212960	74213160	+	757.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30E_MM|LTR|ERV1	-3152.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	3.38770397248007	3.50216233740242	3.44482821210491	3.30954593882469	3.66738788432619	3.55974111610022	3.53643522327733	3.13219749238127	0.291929719343049	0.579528951555606	0.815384290230806
Merged-chr6-4544758-1	chr6	4544658	4544858	+	574.333313	f0_balb.idr	Intergenic	Intergenic	39140.0	NM_007743	12843.0	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	3.4718805604601	3.64682984392069	3.52631130333405	3.41138239706682	3.73696225043616	3.40778567229363	3.28455841470276	3.35548025231738	-0.142726191968758	0.785263732748124	0.916435002431157
Merged-chr5-105345181-3	chr5	105345062	105345262	+	778.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132129, intron 1 of 10)	intron (NR_132129, intron 1 of 10)	1310.0	NM_001039647	634650.0	Mm.458435	NM_001039647	ENSMUSG00000092021	Gbp11	EG634650|Gm7141	guanylate binding protein 11	protein-coding	3.13399869740446	3.12400312523074	3.24559816838844	2.99107932851421	3.108528722446	2.98576895252122	3.1227018143601	3.13276681945256	-0.113541209590117	0.840353870959861	0.939246943014465
Merged-chr16-85800828-3	chr16	85800733	85800933	+	816.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009621, intron 1 of 8)	intron (NM_009621, intron 1 of 8)	2280.0	NM_009621	11504.0	Mm.1421	NM_009621	ENSMUSG00000022893	Adamts1	ADAM-TS1|ADAMTS|ADAMTS-1|C3-C5|METH-1|METH1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1	protein-coding	4.68901174187103	4.57385983229033	4.15749043969776	5.0039756577521	3.70423015409185	3.7047811934637	3.49495678433586	3.5776303702421	-2.89650833622755	3.84398695802518e-08	1.81801427033405e-06
Merged-chr7-45935287-4	chr7	45935233	45935433	+	879.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033243, intron 2 of 12)	intron (NM_001033243, intron 2 of 12)	6935.0	NM_001033243	211535.0	Mm.227539	NM_001033243	ENSMUSG00000040189	Ccdc114	-	coiled-coil domain containing 114	protein-coding	3.65636162560096	3.66378001395226	4.11794364821799	3.63164628874239	3.88852530794041	3.38886754990519	3.97805491682827	3.59822688746659	-0.112741849013064	0.826603605062527	0.933488045260841
Merged-chr13-103924286-4	chr13	103924178	103924378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3692.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	5.75360365247321	5.9418751008446	5.64777632707209	6.28252220182675	5.97990309291387	5.87922536897589	5.91430027298521	5.89552138875808	-0.0569782119198696	0.834366850641978	0.936829953336994
Merged-chr7-4501014-4	chr7	4500916	4501116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029834, intron 1 of 21)	intron (NM_029834, intron 1 of 21)	664.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	6.87836406077561	7.11828129047205	7.1718508054786	7.00596321362268	7.05677975482752	6.76609058229637	7.06918646391254	6.8328896187208	-0.141328273058801	0.477814401775198	0.753959327494664
Merged-chr1-130430011-6	chr1	130429904	130430104	+	865.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151525, intron 2 of 3)	RLTR13D5|LTR|ERVK	-6961.0	NM_001317361	13137.0	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding	3.48360864143414	3.93153765437865	4.1486910976531	3.56800452964918	4.08437937627822	3.7294623522111	3.817156201006	3.975633284662	0.312746447633269	0.525805867683972	0.783367294725902
Merged-chr15-86240016-2	chr15	86239916	86240116	+	923.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 4 of 12)	intron (NM_145476, intron 4 of 12)	25557.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	3.04108452514365	3.00311636484959	2.97606555167507	3.09989211269366	3.33377238051524	3.27417271045606	3.31244632763844	3.10218465521547	0.8652443693027	0.117615868585605	0.379328496151101
Merged-chr17-34092801-4	chr17	34092694	34092894	+	981.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046183, intron 2 of 4)	intron (NR_046183, intron 2 of 4)	415.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	5.4283990960191	5.71575269120703	5.24159523729515	4.8235575243661	5.90970966589297	5.86448865837966	5.5126154036077	5.23798065047599	0.570315713475515	0.098623535998063	0.344198316685762
Merged-chr3-9865053-4	chr3	9864953	9865153	+	886.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-31374.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.69132571452495	4.45196235958178	5.03540069649789	5.33421287036094	4.4633303082866	4.46265080284294	4.88496981545795	4.52111335292332	-0.718297674729698	0.0759610137371724	0.297749270157949
Merged-chr9-107567021-4	chr9	107567001	107567201	+	917.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019742)	TTS (NM_019742)	-2062.0	NM_010489	15587.0	Mm.4834	NM_010489	ENSMUSG00000010047	Hyal2	AI256841|AU020858|AW555733	hyaluronoglucosaminidase 2	protein-coding	4.3746582748025	4.07461780745233	3.63417451089541	3.82264314191655	3.9895398283183	4.15736374542712	4.19605074212534	4.29512710497113	0.421572417226559	0.354459140507436	0.66113010749381
Merged-chr2-126682452-4	chr2	126682342	126682542	+	939.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6105.0	NM_001271470	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	4.20701375837918	4.53868388647307	4.60742155330694	4.59442313715549	4.30890648037257	4.33551880113899	4.76169053200828	4.74830883941534	0.108552399450353	0.780296434614163	0.914431162030384
Merged-chr2-181537837-4	chr2	181537738	181537938	+	929.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271584, intron 2 of 5)	intron (NM_001271584, intron 2 of 5)	17353.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	4.43291567195469	4.24759059184028	4.51490147754561	4.70941931525636	4.376209379006	4.28015010719524	4.08407780984955	4.72802846209329	-0.25008690154801	0.540833736133407	0.792982745230616
Merged-chr11-54902865-4	chr11	54902764	54902964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329860)	promoter-TSS (NM_001329860)	10.0	NM_008161	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	5.74907396099826	6.00091178613503	5.69969563647369	6.04030766146611	5.82918483336079	5.55973369513077	5.74526424116987	5.58858518244735	-0.329569858912361	0.211338901208131	0.51596267017985
Merged-chr4-107252850-1	chr4	107252750	107252950	+	710.0	f0_balb.idr	promoter-TSS (NM_001355460)	promoter-TSS (NM_001355460)	683.0	NM_029985	77809.0	Mm.29681	NM_029985	ENSMUSG00000028617	Lrrc42	A930011F22Rik|AA536996	leucine rich repeat containing 42	protein-coding	3.43492266341852	3.66919207875765	3.32343393733771	3.34407143456431	3.07291775220336	3.49548777066466	3.36738854805244	3.13391512538314	-0.633552286381606	0.253786275087423	0.565037637611752
Merged-chr2-91696393-4	chr2	91696299	91696499	+	916.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355416, intron 1 of 17)	B4A|SINE|B4	14193.0	NM_145528	51897.0	Mm.28492	NM_145528	ENSMUSG00000027244	Atg13	1110053A20Rik|D2Ertd391e|Harbi1	autophagy related 13	protein-coding	5.18545554008459	5.0387960096783	4.62226732433358	4.75983816728695	4.62742210775292	4.47516237723059	4.7195270226926	4.57687942080529	-0.648783979412043	0.0718716018140679	0.287967843823447
Merged-chr10-14173560-3	chr10	14173428	14173628	+	723.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	207149.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	3.37687104593122	3.35893990481341	3.18937809424418	3.18462135958983	3.56144432590304	3.49218063661233	3.62451036266409	3.63837642314712	1.05222477832541	0.0348127845672806	0.184697249024869
Merged-chr18-46575555-8	chr18	46575367	46575567	+	863.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173394)	promoter-TSS (NM_173394)	-934.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	3.44206710779075	3.03646517914235	3.65734491740977	3.52242342889283	3.78927235117197	3.77620865886592	3.53996642250825	3.38109499564453	0.638412253962292	0.248113874928297	0.559186294982657
Merged-chr13-24762011-4	chr13	24761911	24762111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020567)	promoter-TSS (NM_020567)	-74.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	6.99316586356221	6.70104850096086	6.6813688639495	6.9733108264417	6.78402002105652	6.77885544969128	6.79250203637383	6.79449308636905	-0.0928524897198768	0.646291997110192	0.851295585787822
Merged-chr11-98801615-3	chr11	98801513	98801713	+	972.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361932)	TTS (NM_001361932)	2959.0	NM_001361934	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	4.41832043307547	4.15541603271245	4.41904246856717	4.49657932676567	4.01351597180487	3.97125033595973	3.8346572184754	4.29568918658811	-0.873635359507049	0.0383386046443189	0.196352247803855
Merged-chr5-29435204-3	chr5	29435107	29435307	+	898.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033457, exon 1 of 11)	exon (NM_001033457, exon 1 of 11)	540.0	NM_001033457	433864.0	Mm.262815	NM_001033457	ENSMUSG00000001569	Nom1	D5Kng1|Gm1040	nucleolar protein with MIF4G domain 1	protein-coding	4.51755934441797	4.47111523700691	4.63776593778112	4.58167801891545	4.68670425967993	4.41920702336368	4.36735376316141	4.84397624195829	0.0996186712946495	0.78503546005331	0.916374873074418
Merged-chr5-101997523-4	chr5	101997437	101997637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	72384.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.60760357457824	5.8290932068451	5.30508718855636	4.96834233300719	5.43269034331945	5.56996397611371	5.24745097881479	5.17041695584557	-0.162863475420286	0.628916442606182	0.841850103289223
Merged-chr2-73513449-4	chr2	73513360	73513560	+	933.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	16027.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	4.05441302992028	4.19212986906158	4.45757114020764	4.84230570969616	4.10025723322295	3.8855835048099	4.27469811196444	4.29131133894728	-0.711012029855611	0.117241349212432	0.378687102556896
Merged-chr18-50053423-4	chr18	50053312	50053512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134131, exon 1 of 2)	5' UTR (NM_134131, exon 1 of 2)	130.0	NM_134131	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	7.07570476272536	7.72790665473286	6.97324081111808	6.79368472498139	7.30998592563663	7.78356683709411	7.29816228415944	7.20181437027516	0.301955332377577	0.24579696785886	0.556963839422572
Merged-chr13-44996487-4	chr13	44996383	44996583	+	840.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 1 of 9)	intron (NM_025772, intron 1 of 9)	5613.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	3.87478348557192	3.77190309961871	4.10660364371896	3.89294852478656	4.07924396103389	3.507386959445	3.85930513616568	4.14546656817349	0.0364723565167099	0.938554106603759	0.977731712064681
Merged-chr6-82808192-4	chr6	82808096	82808296	+	869.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33742.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	3.77988542912829	4.05315366800708	4.23062076920131	4.25014032994173	3.97958751085417	4.26850352387023	3.87930480021717	4.30950156560915	0.0424003992238988	0.923592163882205	0.97180059474
Merged-chr15-100312590-2	chr15	100312490	100312690	+	869.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_027334, intron 1 of 1)	intron (NM_027334, intron 1 of 1)	7773.0	NM_027334	70152.0	Mm.488086	NM_027334	ENSMUSG00000054619	Mettl7a1	2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1	methyltransferase like 7A1	protein-coding	3.17098694857419	3.09671991159924	2.79942953428398	2.7750381327037	3.0057517656587	3.10869551106639	3.04720446173252	3.05719010389188	0.373089936970976	0.53288783832243	0.788361221373688
Merged-chr18-60750703-4	chr18	60750634	60750834	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2069.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	5.40413917467032	5.15465449350466	5.58926133895353	5.81167940346861	5.09959663122414	5.15105521681786	5.51125822943259	5.08115340523704	-0.548197648661927	0.0877783966133211	0.323210309479053
Merged-chr7-142497935-3	chr7	142497820	142498020	+	861.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163666)	promoter-TSS (NM_001163666)	-916.0	NM_001347549	21957.0	Mm.389992	NM_011620	ENSMUSG00000061723	Tnnt3	fTnT	troponin T3, skeletal, fast	protein-coding	3.24259292754218	3.29928905978658	3.62880994544512	3.26366501022433	3.28916729468707	3.48010316956527	3.56483097364674	3.52778280681058	0.358888161755071	0.491322533841474	0.762953445515293
Merged-chr17-70992570-3	chr17	70992473	70992673	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2057.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	5.67798751482546	5.72293788357633	5.63515588984781	5.565976643243	4.39167065158102	4.72713553504229	4.66218847176	4.68083638687346	-2.04210523735344	3.29730248890081e-10	2.3306722329441e-08
Merged-chr17-5445588-4	chr17	5445498	5445698	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5338.0	NM_027457	70544.0	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	4.89601300656074	4.97802212507592	4.93292726921642	5.40201562877336	4.90192860461519	5.03420244751668	4.75979039016395	4.85645462452183	-0.397516851578529	0.242815232661397	0.553704922329903
Merged-chr6-134469418-4	chr6	134469313	134469513	+	848.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 13 of 22)	intron (NM_008514, intron 13 of 22)	54985.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	3.91354570698099	4.1100899821166	4.25184744030555	3.91380587476186	4.19027397019698	3.85948519572562	4.56203298315562	4.20602714278111	0.463184302196932	0.288387488014111	0.600401679176239
Merged-chr1-37559845-4	chr1	37559739	37559939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18823.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	5.6768084239266	5.74696945305498	6.03306804618339	6.41685532829242	5.79059153205114	5.68264996972601	6.1563873944627	5.85185455525881	-0.224423568238193	0.447297765913245	0.732856267377288
Merged-chr19-3899138-4	chr19	3899044	3899244	+	961.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136091, intron 10 of 19)	intron (NM_001136091, intron 10 of 19)	6086.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	5.13398588003712	4.87347266906068	5.07282378780593	5.04283810712491	5.21134596505429	4.88275378824772	4.87912140793671	4.74533966252866	-0.149244911310893	0.649575659444971	0.852797294781466
Merged-chr16-30388840-4	chr16	30388750	30388950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128094)	promoter-TSS (NM_001128094)	-320.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	7.40641806941918	7.45817370728555	6.62410612309515	6.99607037853381	7.48115982894623	7.64186056725353	7.78022210294662	7.47796707184987	0.585754725925165	0.011402448271606	0.0866554415465133
Merged-chr11-103383749-4	chr11	103383644	103383844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 5 of 11)	L2a|LINE|L2	-20052.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	7.39301354987023	7.11726665501145	7.27292173121104	7.34194911498727	7.08603619740698	7.29188103429532	7.38605783253769	7.28890128031295	-0.033932802832148	0.855746351067286	0.945737752088283
Merged-chr2-78050736-3	chr2	78050660	78050860	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_108098)	promoter-TSS (NR_108098)	-417.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	3.5590043762136	3.7078673340518	3.61577561604122	4.04001853168713	3.3992742589065	3.55399650668564	3.70618938196702	3.86299541560551	-0.373183838826499	0.466170091934184	0.74629927630325
Merged-chr2-151575732-3	chr2	151575647	151575847	+	853.56665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145535, intron 1 of 8)	intron (NM_145535, intron 1 of 8)	3124.0	NM_145535	228765.0	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	3.61381851711162	3.22510261799274	3.50747923231534	3.3278003478774	3.77310808795089	3.62389198403404	3.5476146976017	3.61223080816126	0.747140771577271	0.132415534821757	0.405228313903344
Merged-chr9-59547265-4	chr9	59547163	59547363	+	866.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	7723.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	3.65473010768101	3.79941220980163	4.04724520904235	3.90220489391302	4.08607700874776	3.44769070667693	3.89706906024541	3.70925136647432	-0.120669621824445	0.806935989968568	0.925565567068015
Merged-chr17-25240033-6	chr17	25239919	25240119	+	988.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163718)	promoter-TSS (NM_001163718)	97.0	NM_172529	214505.0	Mm.38607	NM_172529	ENSMUSG00000035521	Gnptg	6430527N14Rik|A830081F19|AU067667|AU067744|Mdcp1|Tce7	N-acetylglucosamine-1-phosphotransferase, gamma subunit	protein-coding	4.71744635607902	4.43910749739907	4.78898466465547	4.17500384823697	4.59918871678287	4.77789294577661	4.11352517093592	4.97649330653444	0.242017134705487	0.56752375551686	0.808303453536389
Merged-chr5-21017323-4	chr5	21017227	21017427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 4 of 17)	Lx5|LINE|L1	17920.0	NM_001356592	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	5.84647693052138	6.42367846418128	6.2524586761812	5.70603480113256	6.2308809000304	6.31336959447055	6.27354971112264	5.65466335157295	0.0976275830403333	0.740312874180722	0.897803754156284
Merged-chr2-163587675-4	chr2	163587572	163587772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14642.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	5.59885304159724	6.00885823328912	6.13910598487107	6.13396084433105	5.57267941823245	5.5343823055335	5.75289066559886	5.62358486788706	-0.614440355258989	0.0222060004385366	0.137344191540646
Merged-chr11-85774904-4	chr11	85774821	85775021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046194, intron 1 of 2)	intron (NR_046194, intron 1 of 2)	759.0	NR_046194	78420.0	Mm.488197	NR_046194	ENSMUSG00000085514	Bcas3os2	9530048J24Rik	breast carcinoma amplified sequence 3 opposite strand 2	ncRNA	6.25644950704629	6.48564296610112	5.72183256259151	6.36102926337334	6.24380288230363	6.03135215313763	5.91962952189177	5.79835245347527	-0.352639349196904	0.198825284306239	0.500526867107314
Merged-chr10-95510181-4	chr10	95510086	95510286	+	807.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-4976.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	4.43793865865207	4.83322764185654	4.25250839657831	4.29588726621863	4.58090596488215	4.47819623990112	4.54123877491693	4.59823527574927	0.180804610709142	0.636786121873804	0.846451769792625
Merged-chr6-43848041-3	chr6	43847915	43848115	+	775.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-181737.0	NM_001311111	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	3.31634820774656	3.09338443871831	3.50729389903951	3.34460221952198	3.06009805084904	2.92911932575132	2.81467124272451	2.9625347256751	-1.54801057455592	0.0128265907698511	0.0942141141565434
Merged-chr3-83859254-4	chr3	83859156	83859356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17648.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	5.83343837703196	5.83730286757032	5.56316280678919	5.36828717482306	5.53026783909504	5.76547029981042	5.73672533554006	5.50306194353527	-0.0275405330447152	0.922395653611431	0.971273876479845
Merged-chr6-88034569-3	chr6	88034469	88034669	+	908.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	10448.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	3.55463331146479	3.41103408445479	3.23489421340544	3.6215002270249	3.08692257516742	3.28380128869028	3.09815525916239	3.23330108212441	-1.11618419803787	0.0450876619886796	0.21713766527011
Merged-chr11-75192938-4	chr11	75192791	75192991	+	924.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1102.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	4.14365452834713	4.25262300611443	4.23801354290808	3.93997276957547	4.40195889705973	4.36518963297874	4.12656901312414	4.48088017279677	0.534275741048038	0.180060514581112	0.47641541028061
Merged-chr4-133599910-4	chr4	133599854	133600054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_018754)	TTS (NM_018754)	2214.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	6.80594732814399	6.78991735641486	6.66095108763008	6.71019212542114	7.03854707459765	6.69071238350465	7.02087679596757	6.25909973465016	0.0799871827277696	0.738341257578378	0.896701754212797
Merged-chr1-54920294-4	chr1	54920191	54920391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	6096.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	5.35139143290991	5.4813494189362	5.32241358084839	5.7738595228853	5.32449584078962	5.11796642356422	5.29608441738267	5.22468895024481	-0.478610866553323	0.109546908593553	0.365476419347574
Merged-chr4-138013924-1	chr4	138013824	138014024	+	629.0	f0_balb.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	16099.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	3.22998945820793	2.9577026445857	3.17956589518801	3.37457119800752	2.57258135000092	2.78496995631139	2.67158461129752	2.82109177452201	-2.45659006738713	0.000619061395163054	0.00916285528099627
Merged-chr11-67966441-4	chr11	67966348	67966548	+	981.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361351)	promoter-TSS (NM_001361351)	-10.0	NM_001361352	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	4.9900980546762	5.0199529050985	5.13298727653306	5.23160252836293	5.63338591857899	5.4038441621134	5.03949785423774	5.40064996437153	0.525236021888868	0.0903869180466282	0.32833122937693
Merged-chr17-42909589-4	chr17	42909483	42909683	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33159.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	5.0236649156464	4.78869368568293	4.70914224150702	4.01418465208887	6.39058579275362	6.32457368618145	6.02905171272255	6.0928619011006	2.78565083889643	9.63544401298773e-17	2.07202800423098e-14
Merged-chr3-108786753-3	chr3	108786649	108786849	+	708.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	47091.0	NM_177859	329738.0	Mm.72322	NM_177859	ENSMUSG00000049565	Aknad1	4921525H12Rik	AKNA domain containing 1	protein-coding	3.66621373270771	4.16006026096959	3.77722527799187	3.65172090042589	3.79930416411439	3.95000196260498	3.7619946479405	3.92478701552009	0.0922948523922147	0.843155679513326	0.940459539910433
Merged-chr12-21426705-1	chr12	21426605	21426805	+	895.5	f0_balb.idr	Intergenic	Intergenic	-9269.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	3.70501441894725	4.03426748904349	4.05506619663074	4.22894680420948	3.5974660516818	3.70320443594545	3.90013864910276	3.91440298836194	-0.713057917425078	0.128354526766868	0.398627639108987
Merged-chr2-35463597-4	chr2	35463489	35463689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	-2140.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	6.66270792071907	6.50657273353023	6.14519260202571	6.47722650992463	6.7509723504667	6.38798864410243	6.7808322648922	6.45257723795002	0.216991090432052	0.350115615813702	0.657681817217446
Merged-chr6-86525843-4	chr6	86525713	86525913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011865, exon 1 of 1)	exon (NM_011865, exon 1 of 1)	376.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	6.25752707707051	6.0781357444606	6.56752295399537	5.89466193361523	6.03151517630392	6.27764975761577	5.91588691104329	6.21672634582567	-0.143342255153203	0.588198273280335	0.819610917619141
Merged-chr16-84972136-4	chr16	84972031	84972231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045889)	promoter-TSS (NR_045889)	-80.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	6.78479313757293	7.31030519205541	7.26237332672614	6.87620057844402	7.17847541918595	6.97828525297157	7.02905758418193	6.65643584797275	-0.129650998674821	0.570333731480711	0.809955600907115
Merged-chr13-81051694-4	chr13	81051581	81051781	+	918.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	intron (NR_015587, intron 1 of 1)	87607.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	4.28453660448431	4.34103808202813	4.49858319414513	4.65446516993861	4.12057295350392	4.36499131613747	4.43817559646023	4.45580364303545	-0.288859699498109	0.460235260202778	0.742490742225721
Merged-chr13-28420027-4	chr13	28419932	28420132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	277548.0	NM_023746	28078.0	Mm.155058	NM_023746	ENSMUSG00000017064	Prl5a1	1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl	prolactin family 5, subfamily a, member 1	protein-coding	7.16671276491877	6.74938674225537	6.93888184901211	7.4329304722453	6.60619102467995	6.45622362161995	6.59250509916841	6.37334857179332	-0.842290004081063	0.00033196917984483	0.00551440706001754
Merged-chr11-88203839-2	chr11	88203733	88203933	+	865.625	f0_balb.idr|f0_c57.idr	promoter-TSS (NR_111902)	promoter-TSS (NR_111902)	-555.0	NM_024174	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	4.32088913163848	4.22322744603722	4.12748128652392	4.31963813048641	4.39654572992644	4.35572716849348	4.8090723313825	4.48734936408104	0.620368430788621	0.106760386308524	0.360348218742401
Merged-chr7-55910595-4	chr7	55910484	55910684	+	873.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 22 of 30)	intron (NM_011370, intron 22 of 30)	51909.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	3.6784135183819	3.93849052994015	4.06046031214657	3.81306983776772	4.16049923868801	4.27796595057879	4.40579504861431	3.95984990517013	0.879378174870436	0.0403321072548016	0.202840320941816
Merged-chr13-107022503-4	chr13	107022399	107022599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145779)	promoter-TSS (NM_001145779)	-71.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	7.21565881122743	7.01662770006954	6.76199274950212	6.76656365479162	7.28126899221734	7.23578806042673	7.41135714979176	6.56009858644248	0.295924377156403	0.226514610634469	0.535170560306399
Merged-chr5-4530892-4	chr5	4530810	4531010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	227306.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	6.21161821962987	6.04172759715356	6.21271598918302	6.19727739017762	6.3124262238231	6.46347461679491	6.25629010176759	6.20827595563533	0.217859169322882	0.328761951769642	0.640144325858488
Merged-chr8-24400344-4	chr8	24400255	24400455	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38591.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	5.14886364127962	5.1320297752367	5.11731846322151	4.83586057342891	5.30920229852329	5.3229884158554	4.91814709638362	5.26801500139151	0.318423073968835	0.30960808964394	0.621833440934041
Merged-chr9-123366884-4	chr9	123366791	123366991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348167)	promoter-TSS (NM_001348167)	-36.0	NM_001348167	102436.0	Mm.276076	NM_153168	ENSMUSG00000035202	Lars2	AI035546|Kiaa0028|LEURS	leucyl-tRNA synthetase, mitochondrial	protein-coding	7.0144435738854	7.07007317910122	6.71890251695985	7.04450953802991	7.24747964978328	7.19259038886886	7.21923674181624	7.25044753085816	0.344256216395624	0.0687663053276438	0.280191030089384
Merged-chr7-111226472-4	chr7	111226379	111226579	+	795.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103804.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	4.30357071119953	4.36342311883132	4.46203102651703	4.41745324065114	4.23813109333397	4.0370405762535	4.00702184996178	3.85452145597537	-0.851040444954165	0.03953665896725	0.200274574643416
Merged-chr7-45238111-4	chr7	45238019	45238219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007645, intron 2 of 7)	intron (NM_007645, intron 2 of 7)	720.0	NM_007645	12493.0	Mm.3689	NM_007645	ENSMUSG00000030798	Cd37	Tspan26	CD37 antigen	protein-coding	6.31806456272659	6.17609700982974	6.64424422369471	6.57578376185188	5.83814944599042	5.84307136320802	5.8980798968578	6.08233417650889	-0.816757793831681	0.000871291388378955	0.012058652485597
Merged-chr3-51413551-3	chr3	51413476	51413676	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2440.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	3.96233499403256	3.57160331596042	4.17547962140166	3.92233924968	3.1871200735178	3.77129031562812	4.03340787195274	3.91338984996881	-0.453226974575937	0.411753324465954	0.707123186245418
Merged-chr7-19687365-2	chr7	19687265	19687465	+	838.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR1B|LTR|ERV1	5294.0	NM_001110009	11812.0	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	3.39063678352447	3.05912678755161	3.05712965227007	2.57528699615377	2.95372364675228	3.29368938261367	3.16530545975303	3.17643326286087	0.388956048572699	0.552139446644742	0.799371172712563
Merged-chr17-17901887-4	chr17	17901754	17901954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14030.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	6.3560167785104	6.1010215140692	6.38975560292676	5.93795470100665	6.11976379922851	6.00848274666724	5.82604926658281	5.60876492695726	-0.441361345156185	0.0991530551538006	0.345284506496691
Merged-chr16-13717088-4	chr16	13717026	13717226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011987, intron 3 of 3)	MTC|LTR|ERVL-MaLR	-12710.0	NR_040574	76684.0	Mm.491043	NR_040574	ENSMUSG00000086550	Pla2g10os	1810007I06Rik	phospholipase A2, group X, opposite strand	ncRNA	6.11440297087737	6.18832164957622	6.85026014008419	6.2885424315653	5.70888732300216	6.20557735618087	6.16593873227179	6.49298702368455	-0.339727505911537	0.241814327746366	0.552342662045394
Merged-chr17-83695971-4	chr17	83695874	83696074	+	806.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-10189.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	4.44502235910329	4.55939728567535	4.16590432637485	4.67901140665639	4.17148314142741	4.34425515683802	4.68678485804285	4.48409656931083	-0.137306026432886	0.732382312324493	0.893963778565797
Merged-chr6-50973537-3	chr6	50973446	50973646	+	978.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	197431.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	4.15465769078961	4.09160130063487	3.98065357910845	4.7541846304559	4.84749435871593	4.7077649652767	4.62911746245626	5.00433118904199	1.07571180502818	0.0159676186773625	0.1095267543448
Merged-chr15-74988426-1	chr15	74988326	74988526	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-4996.0	NM_020498	57248.0	Mm.358339	NM_020498	ENSMUSG00000022586	Ly6i	AI789751|Ly-6I|Ly-6M	lymphocyte antigen 6 complex, locus I	protein-coding	3.75189363247334	3.56450794009399	3.75241848445687	3.68735547020333	3.85420160727136	4.16160343752582	3.68358462907354	3.94703055945123	0.664492682378581	0.144540206538898	0.423680243842696
Merged-chr17-28810322-3	chr17	28810224	28810424	+	944.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081315, intron 2 of 12)	intron (NM_001081315, intron 2 of 12)	9198.0	NM_001081315	268936.0	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	3.58483208500322	3.92134552955973	4.14062113401117	3.92492279337229	3.58386615944861	3.5804016075209	3.32112319968976	3.69427324665331	-1.09509302445748	0.0303599600599343	0.168569361381887
Merged-chr19-42018083-4	chr19	42017978	42018178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	-17960.0	NM_020033	56642.0	Mm.143737	NM_020033	ENSMUSG00000025172	Ankrd2	Arpp|mArpp	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding	6.28023927093554	6.2428752965451	6.26332434509936	6.2388868302492	5.96821347940671	6.17801915681874	5.97121818020163	5.8049960828372	-0.419249418384706	0.0709230551043969	0.285611813631427
Merged-chr9-24504635-2	chr9	24504535	24504735	+	727.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-1495.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	2.39721043186898	2.20211125258467	2.25090788331398	2.34072573410833	2.38776901299492	2.57090239056408	2.74593834305039	2.52822504060912	1.44272072657119	0.0471882795320253	0.223622806179096
Merged-chr10-81356509-4	chr10	81356411	81356611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028657)	promoter-TSS (NM_028657)	-980.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	6.93080780384135	7.08865884436684	6.54600692612954	6.62528327003724	6.97222591490861	7.01564529806476	6.84492468465707	6.79237401390843	0.139568363659813	0.52366901752731	0.782605836011569
Merged-chr5-72350412-3	chr5	72350326	72350526	+	926.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122756, intron 10 of 21)	intron (NM_001122756, intron 10 of 21)	147083.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	3.88251112597695	3.54940370496963	3.97344809867606	4.05695442431776	3.83626766050631	3.4873228968161	3.66616170709295	3.73205651905136	-0.569119847445916	0.245184706603519	0.556267038796901
Merged-chr2-29054036-7	chr2	29053941	29054141	+	905.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166705, intron 1 of 5)	intron (NM_001166705, intron 1 of 5)	1025.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	3.56515413861717	3.02899164981418	2.91648598307489	3.02528496642224	3.4471570705347	3.30444094886185	3.59421101286057	3.18905849740208	0.863704368255988	0.145788915497427	0.425569903895265
Merged-chr4-16071510-4	chr4	16071416	16071616	+	932.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-57628.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	4.77088365955894	4.34607628332841	4.29942308180554	4.70785558136535	5.00849029162974	4.79279068686133	4.63723563717966	4.80386154868722	0.560884735172963	0.127675930000707	0.397568009677132
Merged-chr14-8214090-4	chr14	8214000	8214200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027782)	promoter-TSS (NM_027782)	19.0	NM_027782	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	8.64323003034846	8.68064966864454	8.48717748944847	8.6811187371494	8.68035839428929	8.67959391076046	8.89899454888949	8.77511975197816	0.165947010752563	0.266433294487941	0.578131740034666
Merged-chr13-74807984-4	chr13	74807894	74808094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009817)	promoter-TSS (NM_009817)	-34.0	NM_009817	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	5.90218659238543	5.79111044374494	5.85480578374838	6.17546475321653	6.15540213827847	5.90426923994721	6.75206572027962	5.80035241081738	0.405521282219031	0.175952784646747	0.47081759930141
Merged-chr18-62037770-4	chr18	62037675	62037875	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84700.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	5.58431162066007	5.70714183214817	5.47949831503159	5.5425755673242	5.48296826229192	5.07940767107172	5.21149154222773	5.52960975420758	-0.404709744329694	0.159729126902771	0.447447858467163
Merged-chr12-111505094-1	chr12	111504994	111505194	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-19271.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	2.59886509730946	2.82733465013928	2.67203438169518	2.77870897752246	3.0606016020046	2.97737696825867	2.85945050977945	2.98485959762523	1.09943882337269	0.0775457898715881	0.301171812163094
Merged-chr4-127126048-4	chr4	127125949	127126149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099319)	promoter-TSS (NM_001099319)	6.0	NM_001099319	100039968.0	Mm.392655	NM_001099319	ENSMUSG00000070737	Tmem35b	Gm12942|Zmym6nb	transmembrane protein 35B	protein-coding	6.36197911596325	5.89480202807256	5.73875026391845	5.95030254016466	6.14482953671485	6.41492534726082	5.92904833655403	6.08452436475832	0.234955719341568	0.373161962247096	0.676789871854101
Merged-chr18-32405493-4	chr18	32405398	32405598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	ORR1F|LTR|ERVL-MaLR	-27214.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	6.04482958247167	5.56985827640629	5.9155999693789	5.8449582385102	5.8804363890838	5.94731515575911	6.25652594194097	6.1595084299799	0.340386301333729	0.185845916317658	0.483738992085664
Merged-chr9-20385165-4	chr9	20385041	20385241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004190)	promoter-TSS (NM_001004190)	17.0	NM_001004190	434377.0	Mm.379669	NM_001004190	ENSMUSG00000045519	Zfp560	2310030G09Rik|Znf560	zinc finger protein 560	protein-coding	7.41265684838799	7.2757483571129	7.05346585401537	7.34755453272952	7.35981055102955	7.13939680063641	7.35808763786454	7.24696862937262	-0.000247791622786972	0.998942416499969	0.999515665343703
Merged-chr16-44717063-3	chr16	44716955	44717155	+	723.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7246.0	NM_145972	212547.0	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	3.39476418835679	3.37644024996215	3.50606845117022	3.79398484509296	3.2503293478453	3.10291027027265	3.49195791516497	3.70007762131632	-0.448006637316779	0.428916828930673	0.719857371117313
Merged-chr14-46994469-4	chr14	46994382	46994582	+	901.3875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-6858.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	4.75257375858213	4.89769429289232	5.21935302243501	5.08011843380944	4.91178895753925	5.11264216259477	4.64912446658292	4.70947875557147	-0.288764724484605	0.397773166160949	0.696054529321669
Merged-chr11-118244057-5	chr11	118243965	118244165	+	930.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	4527.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	3.36307363213596	3.24835472129941	3.47465458422806	3.44385249872639	3.38176517993264	3.14632272816231	3.74159622776676	3.47269294256943	0.225302138145794	0.674275700486373	0.866093506924868
Merged-chr7-118996351-4	chr7	118996217	118996417	+	783.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1106.0	NM_001195774	64297.0	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding	3.64217309205385	3.6699299156898	3.69989953367125	4.05598801577092	4.06199757401053	4.16635656694917	3.89239078864377	3.85730689094762	0.567858210852647	0.229171947026694	0.53803065625618
Merged-chr2-73470586-4	chr2	73470486	73470686	+	930.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	15167.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	4.66015576391279	4.45519529632859	4.42410441478812	4.46809020608665	4.48974890966986	4.63911186883355	4.0627969834645	4.6213408369037	-0.0678404848854869	0.860289990727585	0.947128143348069
Merged-chr3-65528353-4	chr3	65528264	65528464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178892)	promoter-TSS (NM_178892)	-83.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	8.16587284319484	8.12341929715199	8.18572515555529	8.15725620969901	8.40221884351021	8.35729008715458	8.60702918657636	8.43936577247521	0.377046734894214	0.0128797091171601	0.0944768860890897
Merged-chr19-29355719-4	chr19	29355581	29355781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026362, intron 3 of 5)	intron (NM_026362, intron 3 of 5)	6190.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	5.45439053473302	5.02385932422726	5.43009791595125	4.96028996960049	5.11837674386687	4.95595389690705	4.9853996763545	5.04124685780191	-0.356743073308554	0.275204363627711	0.586982242558338
Merged-chr1-86703786-4	chr1	86703674	86703874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153530)	promoter-TSS (NM_153530)	-30.0	NM_153530	208718.0	Mm.389152	NM_153530	ENSMUSG00000053333	Dis3l2	4930429A22Rik|8030493P09Rik	DIS3 like 3'-5' exoribonuclease 2	protein-coding	5.51125904942363	5.22888671166167	5.09925084845372	5.19557343224106	5.40720258633972	5.8381557214415	5.58781265228528	5.84008960451434	0.712276047668222	0.01437093372037	0.101773372803418
Merged-chr1-165459803-6	chr1	165459698	165459898	+	961.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028759, intron 1 of 18)	CpG	665.0	NM_028759	74106.0	Mm.227605	NM_028759	ENSMUSG00000026571	Dcaf6	1200006M05Rik|Iqwd1|PC326	DDB1 and CUL4 associated factor 6	protein-coding	4.00182488204368	3.70898825056618	3.7507478069556	3.51256740511438	4.08611933991585	4.03018377904369	3.89084434626556	4.04478827201494	0.791601296599713	0.0784247721283289	0.3031258989164
Merged-chr10-79802588-4	chr10	79802490	79802690	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023128, intron 1 of 8)	MIR|SINE|MIR	9018.0	NM_001161747	18483.0	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	4.82882835953451	5.09880482420034	5.11466296110096	5.03141321003961	5.20940310070196	5.08229375473402	5.1514112930568	4.97669779535743	0.16848320778039	0.582612347254382	0.81668109351953
Merged-chr2-126674104-3	chr2	126674019	126674219	+	872.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271470, intron 1 of 8)	intron (NM_001271470, intron 1 of 8)	1233.0	NM_001355109	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	3.39425630394091	3.50850255020152	3.6078067031584	3.35791168410581	3.46852257942929	3.25112045985105	3.32362948121358	3.69991871723238	-0.0528360513789561	0.919161721503616	0.970285021467879
Merged-chr11-68502633-4	chr11	68502540	68502740	+	872.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081566)	promoter-TSS (NM_001081566)	-379.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	4.84521219694391	4.23051035227568	4.37490355416812	4.05599242776244	4.22093186538614	4.50535338391539	4.35503118458664	4.57448930570998	0.0440535695543532	0.917200036805575	0.969459238985449
Merged-chr17-46283036-4	chr17	46282922	46283122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252473)	promoter-TSS (NM_001252473)	4.0	NM_001252475	74094.0	Mm.284594	NM_028751	ENSMUSG00000012296	Tjap1	0610041D19Rik|AI415281|AW121008|Pilt|Tjp4	tight junction associated protein 1	protein-coding	6.69488498124533	7.02945178685309	6.43627420704274	6.00085782805741	6.77409907645514	6.79701580168144	6.82585217807345	6.39510957023697	0.177586506429444	0.524227721393675	0.782789831107843
Merged-chr14-30671455-8	chr14	30671358	30671558	+	957.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177815, intron 6 of 12)	intron (NM_177815, intron 6 of 12)	17083.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	4.0723701361668	4.06728126361028	4.02471482291216	4.03484542807694	3.65414634093834	4.09881320846472	3.95791310130896	4.53896176374078	0.126670432323923	0.785402913762521	0.916479414030825
Merged-chr13-51845685-4	chr13	51845578	51845778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011817)	promoter-TSS (NM_011817)	-997.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	5.80991669392895	5.807310615996	5.59657780797247	5.82387223822161	6.2645165273687	5.83169776144735	6.06546679756072	6.22281094320418	0.54898738476736	0.0282321516070073	0.160917386229594
Merged-chr11-11716867-3	chr11	11716771	11716971	+	927.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301865, intron 3 of 6)	intron (NM_001301865, intron 3 of 6)	26694.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	3.95211128672128	3.65149777683755	4.10355796208697	4.30917003710056	4.13254874240992	4.1301161096748	3.8267376725547	4.72414459285163	0.526031615716744	0.288800608755675	0.600787308002695
Merged-chr10-81359052-4	chr10	81358973	81359173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028657, intron 1 of 9)	intron (NM_028657, intron 1 of 9)	1582.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	6.55548188396018	6.40746689922208	6.04252577404829	6.64500132417763	6.18139591569291	6.10279791400988	6.05598930447294	6.33913826501444	-0.406533744483109	0.0977042835683043	0.342535250953471
Merged-chr11-20468841-4	chr11	20468721	20468921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-74432.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	6.63976278335828	6.92407098419507	6.90084347348847	6.94285196007502	6.83381150024844	6.61069239218225	6.9536476022437	6.86961364245395	-0.0552289764139455	0.786673443252079	0.917102807541269
Merged-chr13-55693497-4	chr13	55693405	55693605	+	974.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181278, intron 1 of 1)	CpG	381.0	NM_181278	78521.0	Mm.28449	NM_181278	ENSMUSG00000045767	B230219D22Rik	AA119856|D530037I19Rik	RIKEN cDNA B230219D22 gene	protein-coding	4.81715482197388	5.06519807371704	4.69115612414137	4.90029856089577	4.95160055154193	5.53677287717777	5.31329803034119	5.0696982118159	0.663310685722207	0.0461754387602362	0.220659386070148
Merged-chr17-46752309-4	chr17	46752208	46752408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305990)	promoter-TSS (NM_001305990)	-94.0	NM_001305988	72029.0	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	8.44646877537233	8.58503724621253	8.4015370449316	8.21065703653915	8.30684121559515	8.57933354049727	8.43356696641492	8.33157978258249	0.0017830642000544	0.99142766289772	0.996745793587504
Merged-chr4-154925895-4	chr4	154925755	154925955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178931, intron 3 of 7)	intron (NM_178931, intron 3 of 7)	2222.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	4.40604843689016	4.86113508671801	4.74508552835287	4.14077044535938	4.83601023822033	4.80321447611386	4.86180414404032	4.84876496089667	0.602310229576391	0.112909663564941	0.371420623567672
Merged-chr16-91793796-4	chr16	91793695	91793895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 5 of 15)	intron (NM_001110276, intron 5 of 15)	64424.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	5.95847340609593	5.95175095538321	6.43634500725653	5.87731401848484	6.30894020149951	6.15911505608937	6.17917080944963	6.14827376189221	0.22117844803994	0.376877442427493	0.679494401442451
Merged-chr1-138955653-3	chr1	138955543	138955743	+	853.5277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8066.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	3.82046356192285	4.02285425904735	3.76954522849826	4.08354994709428	3.6518454086782	3.77753945154949	3.70159950732862	3.76744197753273	-0.649570608478501	0.155096618341376	0.440650708375076
Merged-chr17-35051892-4	chr17	35051805	35052005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033444, intron 1 of 5)	intron (NM_033444, intron 1 of 5)	1662.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	7.45830832125528	7.55578995522615	7.27518235532158	7.53888470532294	7.66172978202764	7.51700778010225	7.49644085943922	7.36565402673148	0.0688906176444524	0.702518129673318	0.880284093865278
Merged-chr4-101641694-4	chr4	101641601	101641801	+	887.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164585, exon 20 of 20)	3' UTR (NM_001164585, exon 20 of 20)	-6082.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	4.4737243386022	4.90685184372693	4.474445784545	3.8655265940379	4.49976537313825	4.52031369931042	4.36942513076616	4.24781353911927	-0.143045131315344	0.749272074547402	0.901235090931483
Merged-chr2-150669826-4	chr2	150669735	150669935	+	925.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040331)	TTS (NR_040331)	-1595.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	4.48682171439365	4.40275001200471	4.35991042130918	4.86933608487005	4.32077266688207	4.24043568478023	4.34067598659759	4.52444075515566	-0.477276128661754	0.228346271523321	0.537197886725226
Merged-chr1-138559973-3	chr1	138559867	138560067	+	881.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 2 of 9)	intron (NM_021605, intron 2 of 9)	59790.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	3.99045228558545	3.94446081767972	3.74284707873299	3.91540400683059	4.0528754133883	3.91596998394861	3.55534190228958	3.79435157609941	-0.146882099129013	0.750078696033425	0.901576629816678
Merged-chr17-51814606-3	chr17	51814466	51814666	+	756.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163632, intron 1 of 10)	intron (NM_001163632, intron 1 of 10)	-2382.0	NM_001357636	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	3.63091667258924	3.45095868665273	3.6314175626356	3.96921491960148	3.78911824510738	3.31030539127768	3.45067316309427	3.7780566694133	-0.28210185062539	0.597848285452154	0.825622659388437
Merged-chr14-121916479-4	chr14	121916377	121916577	+	995.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182806)	promoter-TSS (NM_182806)	-703.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	4.99870350878612	4.77546803131591	4.92793233461877	4.81822584482191	5.29135323232577	5.24071655043633	5.43290577777026	4.76851869350427	0.640304692269652	0.0500237461979249	0.231827607957686
Merged-chr10-81082329-4	chr10	81082210	81082410	+	885.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_022653)	TTS (NM_022653)	12227.0	NM_022653	50492.0	Mm.26995	NM_022653	ENSMUSG00000004929	Thop1	AI131655|AI327041|EP24.15	thimet oligopeptidase 1	protein-coding	4.02485705072234	3.73320577773833	3.79135564977489	3.47411242078314	3.70960123144627	4.01270477975596	3.61356941452637	3.88785444172017	0.157682294636096	0.744787211074479	0.899349861357637
Merged-chr14-70175861-1	chr14	70175761	70175961	+	1000.0	f0_balb.idr	intron (NM_145978, intron 1 of 9)	intron (NM_145978, intron 1 of 9)	954.0	NM_001253736	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	5.13465924890719	4.90218507253339	4.90276488579196	5.06768511418116	4.85335923514625	5.00252877133144	5.01663126364242	4.97047578996431	-0.105000378400616	0.737463032633839	0.896392006995728
Merged-chr4-40148554-4	chr4	40148474	40148674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 1 of 20)	intron (NM_007386, intron 1 of 20)	5309.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	7.47405444431955	7.42310669400241	7.4846902420634	7.78069063833497	7.53177265930382	6.95735308091592	7.73673348117124	7.38266960997549	-0.157292814892674	0.471378411519054	0.749827406573597
Merged-chr1-172000844-4	chr1	172000754	172000954	+	785.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_033509)	TTS (NM_033509)	26441.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	3.86398449042816	3.71276797576465	3.39764934674034	3.71175074401651	3.91182716633946	4.03505714442246	3.79856214222939	4.08650319444868	0.789923489051591	0.0879765426402444	0.323588379939539
Merged-chr8-3659080-4	chr8	3658970	3659170	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_022984)	TTS (NM_022984)	3300.0	NM_022984	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	4.96004113257248	4.48531674444445	5.18977494285488	4.94754573522001	5.02808961154495	5.10022588115116	5.42992246740366	5.06058905446264	0.47135753337	0.168873616133187	0.461341589819388
Merged-chr15-25135709-3	chr15	25135611	25135811	+	904.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	278053.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	3.64913081082315	3.9661784036707	4.10130726886735	4.04011899994263	3.6637902656983	3.7060240995656	4.08254672594031	3.96524703525154	-0.260167209864336	0.576708668230887	0.81371630217865
Merged-chr10-30804080-4	chr10	30803971	30804171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358841)	promoter-TSS (NM_001358841)	-745.0	NM_001358842	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	5.72771990534455	5.55332437347705	5.98382344332175	6.14419408032639	5.82224739279989	5.55706993644444	5.97390324386398	6.02080007624468	-0.0488260865308963	0.862149505738928	0.947987281539677
Merged-chr7-141370148-4	chr7	141370035	141370235	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5025.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	4.80753641671412	4.23276541999182	4.36467243495875	5.08300717947686	4.55869013257633	4.39416051569796	4.67943112181067	4.77060139462198	-0.166895480040544	0.689517107431409	0.873418603891305
Merged-chr5-124014990-4	chr5	124014891	124015091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	17269.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	7.22924276777763	7.27602934987093	7.70144376195818	7.30055933491532	7.45673225886913	7.09821488901983	7.09153693983286	7.04858463901088	-0.260075771930956	0.217030627713402	0.52382336083714
Merged-chr17-34364007-4	chr17	34363954	34364154	+	937.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_079835, intron 6 of 8)	Lx8|LINE|L1	9232.0	NM_079835	547431.0	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	4.21055142862293	4.31575371722861	4.11094878249443	4.28531639010063	4.46108183090971	4.43204248460399	4.56310946214787	4.42946255250657	0.548732187165565	0.14146360832361	0.418505327384298
Merged-chr8-94330907-4	chr8	94330776	94330976	+	911.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 2 of 24)	intron (NM_019415, intron 2 of 24)	1668.0	NM_001205311	20497.0	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	4.07253927757525	3.99717656277452	3.80361984029421	4.09231080866391	4.53178032863009	4.1476476319699	3.95566642888651	4.4471107245596	0.744954297892282	0.084622707112263	0.316569068667881
Merged-chr4-149167324-4	chr4	149167245	149167445	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081274)	promoter-TSS (NM_001081274)	-640.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	4.7662161594764	4.87170796882131	4.24302745814776	4.60850100063244	4.90136148619109	4.74771506870371	4.59342133202064	4.57071865781842	0.15578430489681	0.67519741486016	0.866604873340231
Merged-chr15-97175211-4	chr15	97175121	97175321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7977.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	6.5728354430819	6.00864477370702	7.04725329269062	6.91614250075186	6.67794471051065	6.46657475174089	6.42375469240289	6.46962326065194	-0.262665624293983	0.338837078400488	0.648178784795838
Merged-chr11-98023313-4	chr11	98023213	98023413	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031173)	promoter-TSS (NM_031173)	-686.0	NM_001282978	12295.0	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	5.30358853327554	5.48485944046557	4.74336449097695	5.34134769450052	5.57523308089506	5.41733171904408	5.42042894948864	5.30082065847121	0.320958417688469	0.308780293496464	0.621122647387586
Merged-chr2-29125074-4	chr2	29124993	29125193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_198033, exon 1 of 26)	5' UTR (NM_198033, exon 1 of 26)	101.0	NM_198033	269254.0	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	7.72319656065216	7.85397113571941	7.52527879373462	7.6232520107218	7.68366197280871	7.70235554396795	7.87206266883469	7.6449330546821	0.054572732727762	0.753426658357367	0.902798885097597
Merged-chr9-21184150-4	chr9	21184067	21184267	+	988.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310750)	promoter-TSS (NM_001310750)	66.0	NM_001310750	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	5.73175674134131	6.18033618327772	5.70773702054129	5.91833149631171	5.81408636515021	5.63535321810791	5.60117688796393	5.29001658218984	-0.487241185975119	0.0849159563641663	0.317031375689164
Merged-chr18-82815350-4	chr18	82815254	82815454	+	984.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-40543.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	4.9186555003256	4.91789849064176	4.80431365057481	4.79472018044015	5.33301984184472	4.90031683805679	5.2976929420798	5.15006732961776	0.647866565826793	0.0385252153284138	0.196912304960627
Merged-chr3-89210955-3	chr3	89210856	89211056	+	941.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357367, intron 2 of 6)	intron (NM_001357367, intron 2 of 6)	3379.0	NM_013604	17827.0	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	3.94365032009547	3.82864939945955	3.68597807433033	3.84577602452748	3.94043344901787	3.80406078534301	4.05877940960174	3.79340047577959	0.215600764745307	0.624650470459336	0.839581122865294
Merged-chr11-113761830-4	chr11	113761747	113761947	+	938.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10032.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	4.53494307788828	4.78578913618578	4.44865132143218	4.17275942272912	4.55112122839721	4.71012427285563	4.84320243711849	4.72728597456427	0.476250577042857	0.207045681482259	0.511049184276
Merged-chr5-45719281-4	chr5	45719183	45719383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_027993)	TTS (NR_027993)	8295.0	NR_027993	100041576.0	Mm.451765	NR_027993	ENSMUSG00000015882	Gm3414	-	predicted gene 3414	ncRNA	6.68000585304549	5.9667499909477	6.39544411632993	6.92650708125958	6.40752209543435	6.25132989740299	6.34480597559422	6.55746103300202	-0.232051992606514	0.395994043184136	0.6950249619634
Merged-chr15-76313443-4	chr15	76313336	76313536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-6191.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	5.84688854298945	5.86402543350448	5.47029397081114	5.90164730658917	5.85204923398331	6.09019193341614	5.61750935876684	6.07714440833786	0.204472513373316	0.447901949948269	0.73332468018769
Merged-chr6-67069971-4	chr6	67069902	67070102	+	703.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040278, intron 4 of 6)	intron (NR_040278, intron 4 of 6)	-32595.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	3.79153712574263	3.63773621690212	3.83590642342655	3.45291222458639	3.43341496790635	3.34683253880569	3.52918321759919	3.59495094557486	-0.656999620856082	0.196784826551497	0.4979362662321
Merged-chr12-12164591-1	chr12	12164491	12164691	+	658.0	f1_balb.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-97548.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	2.79733023288492	2.8430354174711	3.05364826379487	3.04051097723113	3.03304364227544	3.10290167152441	3.15182996981365	2.99269956418097	0.517010252880215	0.379300075310731	0.681876043353602
Merged-chr4-107082370-4	chr4	107082287	107082487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346552, intron 6 of 6)	MTD|LTR|ERVL-MaLR	-14504.0	NM_172873	242603.0	Mm.257231	NM_172873	ENSMUSG00000047636	Cdcp2	D030010E02Rik	CUB domain containing protein 2	protein-coding	5.12439978390924	5.09435612269714	5.3968530550475	5.31221010587373	5.27761675537435	4.67770833696258	5.36968810331544	5.47185762198168	-0.00510687945450158	0.987669185262868	0.995315979319888
Merged-chr6-51550141-4	chr6	51550027	51550227	+	691.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 1 of 6)	L1MB8|LINE|L1	4834.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	3.88529885681924	3.95856590500903	3.37332363101642	3.69087980392035	3.83869671281199	3.85537645406661	3.77238091213009	3.83562733921641	0.236183585455644	0.620487797213475	0.837296218204633
Merged-chr5-138756052-4	chr5	138755868	138756068	+	644.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030565, exon 1 of 10)	exon (NM_030565, exon 1 of 10)	887.0	NM_001359593	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	3.50022643456254	3.36938322689638	3.74494497142798	3.19908161877174	3.40458960593886	3.37947710787332	3.25430868246828	3.69740303125995	-0.0505272462892875	0.926031713303084	0.972756955743805
Merged-chr4-13127265-3	chr4	13127161	13127361	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	220424.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	5.60630230160287	5.48952558776262	5.33585563869251	6.05388675588554	4.16901543494541	4.60865575899636	4.49992490478837	4.35637799399366	-2.57366001146122	8.03885513295607e-12	7.34528458932837e-10
Merged-chr9-77748216-1	chr9	77748116	77748316	+	834.666687	f0_balb.idr	Intergenic	RMER4B|LTR|ERVK	-6319.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	3.46229050047779	3.23359897313981	3.5134487144043	3.86275169652399	2.87999699174346	3.15022700033251	3.22590767594702	3.23587059511393	-1.60538661918239	0.00823691142179905	0.0685123025128242
Merged-chr13-104152527-3	chr13	104152438	104152638	+	744.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025879, intron 7 of 12)	intron (NM_025879, intron 7 of 12)	25928.0	NM_025879	66975.0	Mm.272541	NM_025879	ENSMUSG00000021711	Trappc13	2410002O22Rik|2610524F24Rik|AI451892|AU017229	trafficking protein particle complex 13	protein-coding	3.57919902485796	3.72798313246847	4.16244308480475	3.78203577551213	2.96602600627505	3.18744971581368	3.33684230656736	3.07077419731174	-2.62078334736882	2.57216070099411e-05	0.000635487075793335
Merged-chr6-128839050-4	chr6	128838998	128839198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-12783.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	6.72124069610435	6.60776825870663	6.00914952739417	5.7666897058332	6.61269454747198	6.48362897686585	6.39980120122001	6.57367270252224	0.288460650917187	0.313100220356071	0.625019215603397
Merged-chr1-93083784-3	chr1	93083685	93083885	+	840.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294149, intron 1 of 47)	intron (NM_001294149, intron 1 of 47)	-1305.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	4.14858928507907	3.97729454109197	4.31327958278377	4.49240890478747	3.74378082308709	3.79899274721035	3.94428602311449	3.85300910903613	-1.16184476245476	0.00948809268702661	0.076019017263605
Merged-chr7-100216184-4	chr7	100216090	100216290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11417.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	6.48663733086657	6.99638143971028	6.56843779274693	6.47885202672265	6.49034354885914	6.63032235882437	5.95242957913532	6.07394375257638	-0.482794893980794	0.0686645074038085	0.279955949850824
Merged-chr18-34954392-4	chr18	34954312	34954512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010481)	promoter-TSS (NM_010481)	-61.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	6.32672953536989	6.40145323248714	6.57744941768981	5.84780848426082	6.26239203782565	6.62605423184823	6.05397662472718	6.70152093886972	0.196139172532338	0.479651997156436	0.755351877377772
Merged-chr18-88805008-3	chr18	88804916	88805116	+	692.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B3|LTR|ERVL	89191.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	3.56777575138864	3.17571719053011	3.56827296240067	3.46852242068987	3.73226897526345	3.57257845110295	3.50026025649307	3.71642258624425	0.596232803307372	0.235011682218987	0.544971380637409
Merged-chr18-76929437-4	chr18	76929328	76929528	+	994.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025409)	promoter-TSS (NM_025409)	-599.0	NM_025409	66191.0	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	5.63065982559752	5.80025790258296	5.52162513016099	5.91637462694657	5.88478744803457	5.34164191957366	5.98383532045703	5.33293905168401	-0.0934012274548247	0.757675441564598	0.904815773586341
Merged-chr17-28518199-4	chr17	28518098	28518298	+	904.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12663.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	5.72759622803792	4.63248570685751	5.06646685262025	5.7007484382076	4.41042912064357	5.06595499380901	4.74366930632809	4.88369377048469	-1.09667875718357	0.00774433264508629	0.0656242574765832
Merged-chr19-46394562-3	chr19	46394474	46394674	+	874.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016860, intron 1 of 10)	intron (NM_016860, intron 1 of 10)	1161.0	NM_016860	54130.0	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	3.79176430623697	3.45915956642024	3.58768904791422	3.48864711860524	3.64920670015961	3.64761460702101	3.8657930212682	3.63993749541748	0.386400613490747	0.416966746442458	0.710744672757979
Merged-chr14-62027898-4	chr14	62027808	62028008	+	887.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	265071.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	4.75826591726028	4.37440341377957	5.09539175131833	4.81700732759051	4.46009709632149	4.26831345028139	4.37652404950236	4.52577172902046	-0.817156561602159	0.0348749444672623	0.184871528581249
Merged-chr5-103387587-4	chr5	103387513	103387713	+	806.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37579.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	3.96195853993946	4.06585282560955	3.96254933632637	3.89853190692322	3.93339958785936	3.63771742398281	3.74590467310955	3.91262739675837	-0.425612873120566	0.339849187052626	0.648946231981688
Merged-chr12-84275496-4	chr12	84275394	84275594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-9802.0	NM_029880	77219.0	Mm.246127	NM_029880	ENSMUSG00000072946	Ptgr2	1810016I24Rik|9130222H03Rik|9630002F03Rik|AI838763|B830026H24Rik|PGR-2|PRG-2|Zadh1	prostaglandin reductase 2	protein-coding	7.47942534376887	7.36650207824683	7.07122804511307	7.3079975920716	7.28603319788742	6.91013769659187	7.23006782232565	7.33353001537884	-0.14871505226183	0.453523568869884	0.737572922717789
Merged-chr10-13869749-4	chr10	13869658	13869858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347362)	promoter-TSS (NM_001347362)	-801.0	NM_001347362	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	4.71911831731172	4.55043429251648	4.36028567343039	5.10297221639248	4.88148264659411	4.43897360166178	4.94459167830008	5.25237960296229	0.36448504362358	0.371635688229001	0.675639983971498
Merged-chr5-28259604-4	chr5	28259517	28259717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-13829.0	NM_001310512	269637.0	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	5.66407961405241	5.93264151165424	5.81927869228825	5.68172655034189	6.26517349518125	5.8690581542548	6.04947692023683	5.81514730355708	0.400605400473481	0.120299796439797	0.383935675111326
Merged-chr13-69810384-4	chr13	69810275	69810475	+	899.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138596, intron 1 of 3)	intron (NM_138596, intron 1 of 3)	493.0	NM_138596	28077.0	Mm.52583	NM_138596	ENSMUSG00000021598	Med10	AA959813|AI385605|C78613|D13Wsu50e	mediator complex subunit 10	protein-coding	4.59834174861666	4.32836075670257	4.74302958080997	4.61718389645776	4.25254814475877	4.47607210623754	4.41664414288101	4.55739986545513	-0.357612742907219	0.338577187393079	0.648064797414472
Merged-chr12-112870980-4	chr12	112870855	112871055	+	932.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10039.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	3.55372892789989	3.91038303628416	3.96300407835421	3.7660956077687	3.77604443114094	3.47526670326009	3.94512639134125	3.66714562394961	-0.22421635174108	0.642446807892826	0.849202179906279
Merged-chr4-59352348-7	chr4	59352307	59352507	+	852.738098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 10 of 16)	intron (NM_001163288, intron 10 of 16)	86226.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	3.18566914507505	3.18410465201973	3.59713698843362	3.35135551036562	3.24247907079121	3.02598590789889	3.17484289209194	3.24366592466155	-0.605178462689031	0.283048456489579	0.595256654211106
Merged-chr19-55099484-4	chr19	55099372	55099572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008149)	promoter-TSS (NM_008149)	5.0	NM_008149	14732.0	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT-1|GPAT1|P90	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	6.5838220013371	6.72087449545917	6.09968419260251	6.79308909499754	6.91798144706825	6.64399884163526	6.61398059204802	6.87997772671792	0.26464529784379	0.270135972007872	0.581968488248999
Merged-chr5-142440693-4	chr5	142440591	142440791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-23240.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	7.14250655117136	7.40702060459482	7.18899785194686	7.2492282433814	7.07563356141432	7.14835487003486	7.16400877728171	6.94024683388184	-0.231570740202383	0.214296293263144	0.520075107105561
Merged-chr19-21280080-3	chr19	21280002	21280202	+	576.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009551, intron 5 of 5)	intron (NM_009551, intron 5 of 5)	7824.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	2.8492258830483	3.1076006468315	3.07240873896298	2.29109450536542	2.77487124697337	2.53160811828157	2.64501229489523	2.65228849943694	-1.02126049895829	0.18879923998744	0.487633707369135
Merged-chr7-89338757-4	chr7	89338662	89338862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360745)	promoter-TSS (NM_001360745)	25.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	8.0898186069918	8.17832939380946	7.93519654533067	8.21020465134837	8.20799862914022	8.1623382413623	8.07157546913576	7.76831403226748	-0.0588135680916183	0.738308070117536	0.896701754212797
Merged-chr16-55664098-4	chr16	55663996	55664196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	158042.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	6.5400767111116	5.91549329800614	7.09598720932122	6.69527648734358	6.04660922000277	5.64416102263434	5.89639855052893	6.08448572369295	-1.04695476090232	0.000580167804237622	0.00870300614074388
Merged-chr1-156037395-4	chr1	156037293	156037493	+	919.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160018)	promoter-TSS (NM_001160018)	-913.0	NM_001160018	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	4.59346046938944	4.75879622171249	4.98732509058891	4.51427245628571	4.7375028096831	4.39273671325847	4.57311221572761	5.04367322974493	-0.00764889251539282	0.983794619014145	0.994170724005452
Merged-chr2-19006321-4	chr2	19006213	19006413	+	840.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7994.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	4.39275697922519	3.83937337599804	4.39347705850617	4.56881504712376	4.01614431567798	3.81731571930753	3.97316036467752	4.26975317589551	-0.770899123019782	0.0918745589165164	0.331485159626861
Merged-chr5-43393424-4	chr5	43393297	43393497	+	875.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122172.0	NM_001135172	109323.0	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding	3.56948613235167	3.91728210376992	4.12726888797703	4.31886520824619	3.88259603100474	4.20590715311408	4.315613455527	4.21235175320142	0.34380058334564	0.473887126840291	0.751427115804876
Merged-chr6-97107031-4	chr6	97106954	97107154	+	822.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41829.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	4.56485040471674	4.69872977826788	4.16449187626294	4.96991616826386	4.54873937029517	4.06301885765364	4.46591084180935	4.05369683582942	-0.758121721345341	0.0863996447387478	0.320591752159286
Merged-chr5-64866827-3	chr5	64866729	64866929	+	790.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63306.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	3.50768556209118	3.56314301746727	3.19834868048018	3.57051063960901	3.54861685976988	3.44414318072354	3.64834522031601	3.75570986375279	0.410450188828495	0.420050758994831	0.713058060038122
Merged-chr4-16103121-3	chr4	16103017	16103217	+	945.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60526.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	3.92419520307804	3.72441688018287	4.21849647623287	4.21918411968831	3.74196421548438	3.37904878289367	3.53046918778289	3.9223934212488	-1.10298557509964	0.0313642776640202	0.172455489489852
Merged-chr1-79761352-1	chr1	79761252	79761452	+	620.0	f0_balb.idr	intron (NM_027057, intron 1 of 4)	CpG	417.0	NM_001111279	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	4.18717423278387	4.01020338454014	4.52289546563846	3.88222764261046	3.88406345482895	3.85343039449136	3.71807636771166	4.14177969548659	-0.683119707168406	0.143997982239609	0.422647823917907
Merged-chr18-34140082-4	chr18	34139980	34140180	+	953.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-80904.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	4.80335577490672	4.52357233755549	4.42013216378988	4.89930707347373	4.74729632879342	5.08153260608232	4.91969538537296	4.973080423667	0.481356170299627	0.175551589985928	0.47032648424841
Merged-chr8-72317812-4	chr8	72317702	72317902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1260.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	6.87095992277042	6.59978031852316	7.3796986008944	7.26620122416196	6.92166751661446	6.69116631654543	6.86409386882313	6.73847921593864	-0.362467498929695	0.128823265203699	0.399334169233259
Merged-chr9-13540990-4	chr9	13540875	13541075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79014.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	5.43027292832247	5.73179654884297	5.31036515818064	5.64031049369379	5.39633227376428	5.60553864386137	5.40413540590303	5.24180240620459	-0.234572960627209	0.412415921769966	0.707568213891115
Merged-chr2-94465925-2	chr2	94465825	94466025	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27739.0	NM_001349003	11800.0	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	2.93516533633632	2.83091157360088	2.87443186563913	2.5616679359486	2.74965312287859	2.85133662092074	3.18872545497963	2.80898917485999	0.491707052193945	0.445491311064166	0.731510070411548
Merged-chr17-46160928-4	chr17	46160813	46161013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019581)	promoter-TSS (NM_019581)	-119.0	NM_019581	56055.0	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	8.78452993164593	8.61431161849502	8.37725288416826	8.45043005455436	8.41676129279254	8.435275738206	8.66117983272095	8.44048700539687	-0.0906360881985133	0.586044746615175	0.818516944044141
Merged-chr14-21999751-4	chr14	21999612	21999812	+	951.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-10111.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	4.35303934254245	4.87497508606181	4.99185350657401	4.87130730038928	4.71409759339883	4.58466454453017	4.68985263263604	5.04954068139644	-0.0592957085584398	0.871807735788711	0.95183223179801
Merged-chr2-144213968-4	chr2	144213863	144214063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-24673.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	7.72011663708355	7.7979933901067	7.80810881626905	7.79390987566157	7.8272931285701	7.81440889273194	7.92023347988419	7.64065818178654	0.0312798516629368	0.84860384351255	0.942786711901439
Merged-chr4-53512652-4	chr4	53512530	53512730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133891, intron 3 of 15)	L2b|LINE|L2	72217.0	NM_133891	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	6.53489677342844	6.70371284949655	6.85848238863929	6.56024006705695	5.83064513526273	6.01773089511979	5.88397794698335	5.77848073348191	-1.19924033739991	2.59560901952031e-07	1.01904497738795e-05
Merged-chr15-100600130-4	chr15	100600068	100600268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304965)	promoter-TSS (NM_001304965)	-184.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	5.67060836068015	5.6569338110357	5.11876700379488	5.15693321677987	5.93852825121568	5.89422286104455	5.56613911412022	5.71643957988475	0.63455035202705	0.0330003656330565	0.17828275805871
Merged-chr1-131083734-1	chr1	131083634	131083834	+	1000.0	f0_balb.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	14109.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	4.80295256551322	4.76783140706366	4.83819317690952	4.90622756687697	4.97696137489275	4.37291811276149	4.4683185851586	4.18659040684267	-0.585385092410401	0.141651973432643	0.418816599528155
Merged-chr11-69266495-4	chr11	69266397	69266597	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29475.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	4.69024287922459	4.48705741845308	4.72853238119076	4.50091632382284	4.54115590950462	4.86300551172306	4.81136454354906	4.64930313086848	0.256984173501654	0.462638950822418	0.74416799350498
Merged-chr10-88379687-3	chr10	88379593	88379793	+	944.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 1 of 20)	CpG	281.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	4.0761911562768	3.78514935301473	3.98634707113098	3.82601025116106	4.06976132912967	3.66105304115665	4.05851280119332	3.9362356971289	0.0913505496406413	0.837932435164161	0.938474063450959
Merged-chr18-49980378-4	chr18	49980267	49980467	+	869.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	940.0	NM_001177759	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	4.21119357806145	4.15010828288211	4.29598762813213	4.02469390401105	4.17101617386019	3.98601059679998	4.00816862837578	4.20920967142191	-0.159368567108386	0.697759340454906	0.87800480308191
Merged-chr8-125198607-3	chr8	125198589	125198789	+	748.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	144494.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	4.09777846714676	5.02337322040392	4.73721825756276	4.60881060348508	3.19962162780088	3.55426778460269	3.33659597831579	3.57201010991915	-4.19705682301597	3.25469382063301e-10	2.30490100369934e-08
Merged-chr11-106659340-3	chr11	106659280	106659480	+	827.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001032378, intron 13 of 13)	intron (NM_001032378, intron 13 of 13)	-46450.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	3.32947975740714	3.30444788427004	3.08879541782007	3.34422767922498	3.20633487838229	3.49651180157443	3.2614021725901	3.2718069270307	0.122151317920675	0.820093181813843	0.931143923884632
Merged-chr5-141080536-4	chr5	141080442	141080642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-79946.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	7.01170773422924	6.52630500334054	6.88868653061403	7.11673953499284	6.6153021618226	6.53984273776933	6.87949400734313	6.77473393244945	-0.289188975753165	0.201260975650624	0.503556256669362
Merged-chr18-75494931-4	chr18	75494857	75495057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-19688.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	5.95697423169787	5.92098152366067	6.04324229189578	5.8218696192154	5.83423428810146	6.17576186125957	5.88304311279172	5.93155830312743	0.0425899820007097	0.862296774364216	0.948095550662372
Merged-chr11-22972400-2	chr11	22972300	22972500	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011663, exon 1 of 1)	5' UTR (NM_011663, exon 1 of 1)	395.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	3.55941155880126	3.76715943636817	3.55985834248349	3.70169573641399	3.55125566861351	4.05177491658141	3.86515215932644	4.09727131886222	0.715719418139735	0.136037417114612	0.410486305822995
Merged-chr1-131020648-2	chr1	131020548	131020748	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010548, intron 1 of 4)	intron (NM_010548, intron 1 of 4)	803.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	2.88087400428312	2.89950714047463	2.88120583490148	2.72251014187189	3.13225915891257	3.11405158061311	2.93359640932492	2.94265296168102	0.856158819837862	0.145285178160096	0.424709585455561
Merged-chr17-84981846-4	chr17	84981758	84981958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159498, intron 2 of 7)	intron (NM_001159498, intron 2 of 7)	16833.0	NM_001159498	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	6.43143657371725	6.77226680416864	6.80082115482602	6.39300771956891	6.328294218619	6.14061712928528	6.44969446807094	5.85334232227879	-0.576027444380874	0.0223067210812337	0.137731618653811
Merged-chr2-52862126-4	chr2	52862014	52862214	+	984.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	4246.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	5.64178467110889	5.7618561749676	5.48086011583107	5.37763457128322	5.59656542709579	5.73888914080203	5.73404495107888	5.32454126650436	0.0748665058454997	0.790082422082873	0.918804658314193
Merged-chr7-75848268-4	chr7	75848163	75848363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182782)	promoter-TSS (NM_182782)	-75.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	7.90149796736504	7.91881265303686	7.70708381772709	8.27332495205955	7.84665326454324	8.03614851493311	8.23148262193469	7.59581724539976	-0.0371686055282934	0.859529004534465	0.946868401331194
Merged-chr17-3102542-4	chr17	3102452	3102652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12420.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	5.33437354847812	5.08899539241104	5.59640329641821	5.06310040894156	5.06379396216083	5.29006524111555	5.24966946845548	5.41569645062612	-0.0345943770697148	0.912375204630567	0.967207481621882
Merged-chr14-47353180-3	chr14	47353181	47353381	+	819.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-20579.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	3.16133357454261	3.11062350859667	3.48422506596144	3.36179121536374	3.05500800089322	3.07355855280149	3.02416494833753	3.48204426295638	-0.446137475752348	0.444908335538561	0.73115209509395
Merged-chr4-129823456-4	chr4	129823371	129823571	+	970.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	2763.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	4.72766434543475	4.01089977274796	4.31761655987618	4.72923990415888	4.43538718192346	4.57478721167167	3.70189508552661	3.90481076214948	-0.652185570763374	0.198794773584053	0.500477953840743
Merged-chr7-45488837-4	chr7	45488725	45488925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027903)	promoter-TSS (NM_027903)	-20.0	NM_027903	71755.0	Mm.34208	NM_027903	ENSMUSG00000011382	Dhdh	1300018L09Rik|AA591799|B830008H07Rik|Xld-1|Xld1	dihydrodiol dehydrogenase (dimeric)	protein-coding	6.54525971368747	6.59535872557169	6.48013595317822	6.43157482353598	6.55012676544304	6.41483546400557	6.59084794796955	6.69326182834527	0.0842173710139231	0.686527944442092	0.871787672169905
Merged-chr11-116130186-4	chr11	116130094	116130294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178802, intron 1 of 5)	intron (NM_178802, intron 1 of 5)	934.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	6.50545285465039	6.43387879295913	6.22046233726107	6.39151519285609	6.47827493878769	6.41683075379235	6.10624907702779	6.41938585137588	-0.0370849008348922	0.868936190130857	0.950890741040292
Merged-chr10-78493696-3	chr10	78493599	78493799	+	625.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28751.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	3.30015089169032	3.23076126823225	3.24433407699417	3.29181520020355	3.24157082967622	3.16776992868535	3.11390711500446	3.40372200234102	-0.116767224778852	0.827625162011858	0.933903677361406
Merged-chr11-75531612-4	chr11	75531519	75531719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173388)	promoter-TSS (NM_173388)	-75.0	NM_001199284	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	6.40223948186169	6.36593956098752	6.58085437249762	6.44894006205021	6.36736128896959	6.54382551546204	5.99106393501265	6.19216040062541	-0.238535470081064	0.305201388936772	0.617661724201953
Merged-chr3-58689384-3	chr3	58689285	58689485	+	870.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009174, intron 1 of 1)	Lx|LINE|L1	3003.0	NM_009174	20439.0	Mm.2847	NM_009174	ENSMUSG00000036432	Siah2	AA415433|Sinh2	siah E3 ubiquitin protein ligase 2	protein-coding	3.02524253557051	3.41412634813759	3.27037026607231	3.15508251872733	3.01144292955666	3.26495736351183	3.25755671966745	3.26857825215659	-0.0865059941057	0.877460475907095	0.954164706824192
Merged-chr4-138217134-4	chr4	138217023	138217223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122897)	promoter-TSS (NM_001122897)	-4.0	NM_001356432	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	8.06208890229636	8.11804866408843	7.71804459056875	7.69585153229421	8.07172801476715	8.25374485909337	7.95243149673819	8.00561676419935	0.215505960514618	0.243605035851925	0.554650479735382
Merged-chr4-132804643-4	chr4	132804544	132804744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8280.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	7.5140969825606	7.75521124018907	7.40172842688337	7.34775137156096	7.43195281549882	7.31570373380781	7.59042219455444	7.22708690329701	-0.14665720156566	0.44951737486891	0.734666541738477
Merged-chr9-90226574-4	chr9	90226469	90226669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 5 of 12)	intron (NM_194334, intron 5 of 12)	44200.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	6.59896301055549	6.44497181504931	6.83188561474025	6.90240126435271	6.58361175654983	6.67771851904995	6.64323290701849	6.54679528919287	-0.152068904370058	0.485121872730006	0.759096185959383
Merged-chr5-93152665-4	chr5	93152507	93152707	+	904.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009818, intron 3 of 9)	intron (NM_001009818, intron 3 of 9)	53888.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	3.63268762227599	3.95691414053373	4.03180318003542	3.8159980350477	4.34052850854682	4.42623803778651	4.35416574661674	3.97926197929285	1.09419374272272	0.0106490924926841	0.0826239104574622
Merged-chr18-5805777-4	chr18	5805657	5805857	+	952.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AmnSINE2|SINE|Deu	213110.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	5.05435280407022	4.85239942868461	5.52289960575311	4.91037827621561	4.72914813499558	4.54788756743072	4.75131473500231	4.68967429982239	-0.844123942829595	0.0191905277755072	0.124409620950389
Merged-chr9-5334507-3	chr9	5334384	5334584	+	825.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007609, intron 7 of 8)	ORR1A4-int|LTR|ERVL-MaLR	-10992.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	3.98052986767934	3.81163446464432	3.84617119526538	3.34834061683509	3.80205971685124	3.57875480113346	3.73182638036397	3.63857809410084	-0.185907861941508	0.713826824869404	0.885507313176618
Merged-chr12-33125757-4	chr12	33125661	33125861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015602, intron 4 of 5)	MLT1J|LTR|ERVL-MaLR	21825.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	7.09332830297479	6.85581422611908	6.7952742914633	6.87123475744245	6.67378849681915	6.39588643672643	6.74661517821921	6.96129342454566	-0.275222136390522	0.202383495061347	0.504816938301159
Merged-chr6-124478164-4	chr6	124478077	124478277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13393.0	NM_153508	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	6.84740766584721	7.0720162907054	6.75036860579569	6.29912172882548	6.98352645803026	7.03826482752912	6.59396261820576	6.76006754559885	0.13726635724934	0.580471590162543	0.815726981030575
Merged-chr3-84337730-4	chr3	84337615	84337815	+	747.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32940.0	NM_001271726	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	3.84098366972252	4.27338606502048	4.22014417712931	3.9801056000853	3.76286910699759	3.96294524066973	3.93070520640728	4.13288985004127	-0.375643032503459	0.396233952370743	0.695104735895268
Merged-chr2-60822367-3	chr2	60822263	60822463	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	59075.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	5.0732485129366	5.22152413054569	5.16669315803843	5.19238941823482	4.95895162011717	4.65627038823294	4.84271567727264	4.74418302751153	-0.692564256384155	0.0302568946393595	0.168201773159557
Merged-chr12-98270547-4	chr12	98270447	98270647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008152, intron 1 of 1)	L1MEd|LINE|L1	1912.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	5.68133651384954	5.70625578198771	6.3221862701501	6.1848358419592	5.75961259429745	5.22397173834352	6.11749097961823	5.92194995703293	-0.337994173710766	0.286322945521022	0.598010004085706
Merged-chr3-51353526-2	chr3	51353426	51353626	+	972.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-12882.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	3.69826692770002	3.59563728594446	3.5958510944328	3.28435352150718	3.73539805013489	3.86753207952261	3.47087824115704	3.36021195513165	0.266685743691988	0.6063936749889	0.829368409964156
Merged-chr10-45454320-4	chr10	45454225	45454425	+	898.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001031772, intron 2 of 4)	intron (NM_001031772, intron 2 of 4)	15876.0	NM_001031772	380669.0	Mm.440328	NM_001031772	ENSMUSG00000063804	Lin28b	2810403D23Rik|D030047M17Rik|Lin-28.2	lin-28 homolog B (C. elegans)	protein-coding	4.35425669953944	4.0950493296497	3.92436939221893	4.37744143655233	4.39063627826462	3.98855000697809	4.45000839948058	4.22415972718565	0.169358368563237	0.689351317961512	0.873332932172549
Merged-chr6-16943700-4	chr6	16943594	16943794	+	856.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45253.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	4.39774194424371	3.77251293654037	4.4776039117043	4.73119568220888	4.23999676350329	4.0901742726717	4.33703498587588	4.31128576416693	-0.365500949399248	0.42298254681293	0.714938134013999
Merged-chr8-111536519-4	chr8	111536426	111536626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168621)	promoter-TSS (NM_001168621)	-114.0	NM_001168622	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	5.61427110592734	5.75986953281159	5.35860910451565	5.42700423952328	5.61905379258948	5.62564869570677	5.68548566749377	5.53143395482063	0.124264898618774	0.646702678091528	0.851401409677112
Merged-chr2-32876078-4	chr2	32875965	32876165	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146119)	promoter-TSS (NM_146119)	-69.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	5.47279907829523	5.71997084798099	5.73304803962768	5.75608513274788	5.62637365046032	5.6771392059894	5.15950580048676	5.38062075764264	-0.340026502233936	0.231634608192013	0.541195462875407
Merged-chr18-62232817-4	chr18	62232713	62232913	+	737.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52713.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	4.19159417376538	3.96818476933785	3.72760763299497	3.31457477113573	4.54984060069227	5.15037607727916	4.55237534232243	4.53492083759767	2.18587866888838	4.22226374433576e-06	0.00012772482407908
Merged-chr15-59264109-3	chr15	59263989	59264189	+	869.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42859.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	4.00760234491363	3.55208797811687	4.00828264411773	3.75298446039456	3.25107736113749	3.26521548830011	3.41008916953042	3.3578059945587	-1.77126971719304	0.00107438221861093	0.0142355643965949
Merged-chr5-139284824-3	chr5	139284723	139284923	+	777.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	31326.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	3.70755800278377	3.87397732649254	3.86274010427181	3.60753509593104	4.08032949281179	4.03064444726569	3.74660027213966	3.59290005567236	0.3659599167851	0.436051693952309	0.724977191531146
Merged-chr6-120114830-3	chr6	120114709	120114909	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	21429.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	3.4328514724235	3.72171996841309	3.81805031096661	3.87386026835557	3.26478464828083	3.07936782076767	3.03709653268744	3.18577136653678	-2.14167427922731	0.00033345170160298	0.00553386772403788
Merged-chr6-34867819-4	chr6	34867746	34867946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	4700.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	6.60083764129064	6.50527765115063	6.51148311252552	6.58313626654202	6.26242693179933	6.0270295710907	5.7908168016841	6.06083704648849	-0.744032873351872	0.00139486318759367	0.0176130861858666
Merged-chr6-17779005-4	chr6	17778975	17779175	+	958.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	B3A|SINE|B2	29905.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	3.75854561426928	3.25950762506585	3.87295573859493	3.71190197060133	4.2401677519235	4.15511514040165	4.18874435294168	4.69000778170505	1.76772993099459	0.000336823303978126	0.00558071367641038
Merged-chr5-7955755-4	chr5	7955639	7955839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4733.0	NM_054098	117167.0	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	6.71098805004616	6.26276375941435	6.94892180525261	7.00352388617147	6.36942818492922	6.3591148146691	6.50833381698017	6.83129532869407	-0.346164520987343	0.175903646426565	0.4707717569934
Merged-chr1-85988510-4	chr1	85988405	85988605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27450.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	6.67167768528862	6.64688831566394	6.71857624250327	6.19983216163642	6.77036811943026	7.17500106152097	7.08826881726599	7.0178007548616	0.647764964628798	0.00455016774956509	0.0442817049830863
Merged-chr18-39650553-4	chr18	39650467	39650667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122930.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	6.67313800589345	7.05637006704437	6.87221690896185	6.71971388722516	6.73189287591196	6.85090789535099	6.69982101170445	6.3191111578061	-0.241782219529296	0.279265966757288	0.591418369203021
Merged-chr2-172420630-4	chr2	172420559	172420759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 2 of 6)	intron (NM_001080820, intron 2 of 6)	-19919.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	7.30195840743731	7.79010776741013	7.70291174549665	6.97753157898318	7.4277422670616	7.54171656768728	6.92059174116548	6.7894205228858	-0.357866698058662	0.178798808621359	0.474753624010883
Merged-chr4-150495712-4	chr4	150495628	150495828	+	872.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	156446.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	4.39979551323655	4.20873388948293	3.99685153223291	4.56354344508353	3.72211581915366	4.06663565094125	4.12791772119763	4.27689355330753	-0.673032946666659	0.133573867105278	0.406901236270076
Merged-chr1-184169417-4	chr1	184169323	184169523	+	773.912476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135042.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	3.99128914000762	4.21874462730756	4.5565800737159	4.59163951213493	4.1170271290811	4.31976979556617	4.12827088162346	4.04291882127506	-0.545562607630252	0.199387790550385	0.501236339736241
Merged-chr17-21383748-4	chr17	21383655	21383855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172486)	promoter-TSS (NM_172486)	7.0	NM_172486	210503.0	Mm.33443	NM_172486	ENSMUSG00000062743	Zfp677	A830058L05Rik|Tce8	zinc finger protein 677	protein-coding	6.55294811841739	6.5096023087946	6.23949583047653	6.34445591573481	6.48862349329662	6.92668396698518	7.09784505087944	6.73200120885291	0.588448226755832	0.0114662950412472	0.0869920501749025
Merged-chr11-29885386-4	chr11	29885281	29885481	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 5 of 41)	intron (NM_146016, intron 5 of 41)	-59713.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	5.2691387443253	5.23539742038763	4.7539746120134	5.3328395191123	5.34742936197989	5.44340061299326	5.21344586527986	5.40964226268034	0.314665383342635	0.310650853755723	0.622727754857458
Merged-chr10-62547072-4	chr10	62546981	62547181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19636.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	5.95441566482402	6.08684424477912	5.45682948735767	6.00393656414961	6.04624270655412	5.99350755590407	5.92504518221151	5.60402838757059	0.00155879189986111	0.995489599710941	0.998336821148346
Merged-chr16-95752704-4	chr16	95752601	95752801	+	966.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50294.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	5.33599327618358	5.56280705184048	5.27636837571983	5.17943829055845	5.35291052944586	4.89331951680879	5.78482113001805	5.24144329213923	0.0374255927189334	0.910089413670845	0.966671146059764
Merged-chr12-21269765-1	chr12	21269665	21269865	+	688.0	f1_balb.idr	TTS (NM_008403)	TTS (NM_008403)	16519.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	2.60329980992145	2.64021944489317	2.65959087630571	2.45361982160227	2.08522831523297	2.14209878380041	2.19997517061148	2.20441255900946	-3.44770497729718	0.000785096427755578	0.0110745895028169
Merged-chr5-36483959-3	chr5	36483855	36484055	+	965.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025725)	promoter-TSS (NM_025725)	330.0	NM_001170454	231151.0	Mm.421558	NM_001170454	ENSMUSG00000029196	Tada2b	AA474455|Gm145	transcriptional adaptor 2B	protein-coding	4.62114969822034	4.62766564460904	4.38434935603298	4.27950422454196	4.4338970238403	3.91394260367607	4.40695069500328	4.61881261279726	-0.248042675095197	0.549112981465427	0.797838553710581
Merged-chr5-145231767-4	chr5	145231670	145231870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083958)	promoter-TSS (NM_001083958)	11.0	NM_028298	72611.0	Mm.206555	NM_028298	ENSMUSG00000007812	Zfp655	2700038I16Rik|9030409O18Rik|mKIAA4222	zinc finger protein 655	protein-coding	7.90090982718722	8.27786168780863	7.62220710887524	7.74435789900028	7.98895268767935	8.00542352077191	7.92035173524064	7.78406722204252	0.0231853310125532	0.906629880181921	0.965374636270914
Merged-chr14-50363751-3	chr14	50363647	50363847	+	879.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_205819)	TTS (NM_205819)	5833.0	NM_205819	239081.0	Mm.291512	NM_205819	ENSMUSG00000051969	Tlr11	Gm287	toll-like receptor 11	protein-coding	3.58629957518747	3.46958307683881	4.01917515262191	3.68905017226891	4.20407456270326	4.27692230104207	3.95481790577103	4.01665406664783	1.15089326547771	0.0122484475463398	0.0912302313406579
Merged-chr14-54405441-4	chr14	54405338	54405538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	L1M2|LINE|L1	4034.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	6.5027858733295	6.2233741353218	6.86911970208827	6.72707914677955	6.22834870100767	6.21149996795424	5.60712752647835	5.77771934873322	-0.924773900595707	0.000875017723547902	0.0120968929881013
Merged-chr7-71873110-3	chr7	71873034	71873234	+	915.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36561.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	3.40912119173274	3.22613079148178	3.55159018205603	3.43060196565731	2.68359831501643	2.88749812415546	3.11961766206167	3.1293407797461	-1.88546289098724	0.00386654495531737	0.0390378444502886
Merged-chr10-59967375-4	chr10	59967279	59967479	+	980.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15609.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	6.12259808131402	5.15348736296558	6.48327205429183	6.23426189568989	5.6659186814743	5.29449973094658	6.07300222393742	5.72172114981908	-0.584421468986683	0.105146724464262	0.356698060272696
Merged-chr3-81050042-3	chr3	81049950	81050150	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	13634.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	5.46341580586814	5.55801828372522	5.6898193968326	5.6911788164417	4.30541039848553	4.50107296014629	4.73306206857563	4.17970772512129	-2.37735659672004	2.23859600461376e-11	1.90599312215792e-09
Merged-chr8-123292934-1	chr8	123292834	123293034	+	690.0	f1_balb.idr	intron (NM_016925, intron 20 of 42)	ORR1B1|LTR|ERVL-MaLR	25642.0	NM_016925	14087.0	Mm.6536	NM_016925	ENSMUSG00000032815	Fanca	AW208693|FACA	Fanconi anemia, complementation group A	protein-coding	2.8761378026943	3.08946170357867	2.87652494640497	2.5747242394777	2.57702864615755	2.85979503269166	2.67601982622758	2.68320199820802	-0.781024341357118	0.249336605628319	0.560328612484111
Merged-chr16-33830167-4	chr16	33830095	33830295	+	862.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 1 of 14)	CpG	530.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	4.53278124658404	4.15268266633798	4.04031062227319	4.23386229279948	4.27936911647942	4.32141103141017	4.5834248959501	4.45395495476234	0.385381631257506	0.32928172988756	0.640534070590611
Merged-chr18-38422479-3	chr18	38422359	38422559	+	772.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	3552.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	2.58717477693799	2.45399422924694	2.58745025970774	2.50977216069231	2.80377344295562	2.82450932691609	2.70748834756601	2.77634016364879	1.2337446522731	0.0538457648644025	0.242237877467027
Merged-chr15-102326147-4	chr15	102326027	102326227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027044)	promoter-TSS (NM_027044)	11.0	NM_027044	56612.0	Mm.158264	NM_020031	ENSMUSG00000001289	Pfdn5	1190001O17Rik|1700010A06Rik|D15Ertd697e|Eig1|MM-1	prefoldin 5	protein-coding	5.34216220587048	5.06910149436335	4.87847851141278	4.85710519947684	5.26807664622004	5.2732153386695	5.28836949741302	5.31127082287853	0.464992228027964	0.130174237975378	0.401586493035134
Merged-chr8-106364431-4	chr8	106364329	106364529	+	872.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	-26441.0	NM_021491	58994.0	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	4.28527725646457	3.9924577518789	3.81798330310067	4.04032240981633	4.14888612113385	4.04696353297447	4.00898935358343	4.11662683777046	0.108214277908938	0.797277103762806	0.921600110017986
Merged-chr9-107264050-4	chr9	107263941	107264141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	25355.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	6.19868967557464	6.23546478828531	5.99373100828784	5.88622949875018	6.19958880117395	6.29646777849404	6.22346350592321	5.74354569650476	0.0894157398666731	0.726440547440956	0.891075200356721
Merged-chr13-63254080-3	chr13	63253981	63254181	+	938.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	14052.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	4.12104596000852	3.86931824940794	4.39616229894676	4.00921196340896	3.83784136959897	3.70519549631753	4.013227112725	3.9803768019776	-0.590827936116206	0.1900859685151	0.489188726563073
Merged-chr1-40294576-4	chr1	40294493	40294693	+	901.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123382, intron 4 of 10)	intron (NM_001123382, intron 4 of 10)	28007.0	NM_001123382	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	4.68553403977156	5.04264625943062	4.88421753601172	5.31542264980243	5.34822795310509	4.8215183333133	4.74697396419591	4.72530774194695	-0.128535364515055	0.73228915787968	0.893952343664963
Merged-chr10-37979212-3	chr10	37979114	37979314	+	880.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-196560.0	NR_131035	75877.0	Mm.402094	NR_131035	ENSMUSG00000111234	4930591E09Rik	-	RIKEN cDNA 4930591E09 gene	ncRNA	3.9870170303146	4.38211126335161	4.40511149076494	4.41071272809199	3.82776768071926	4.16600384958125	4.42306982454664	4.32058862994535	-0.289403777722895	0.503346265211853	0.770370061830951
Merged-chr13-112735243-4	chr13	112735134	112735334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178746, exon 15 of 15)	3' UTR (NM_178746, exon 15 of 15)	-65543.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	6.52036616526572	6.66284436930879	6.24983945949172	6.18239870010944	5.59109511372446	5.35235019944265	5.67007419000966	5.60980104260475	-1.34694701875398	4.61026946447948e-07	1.72349984355139e-05
Merged-chr6-61180388-3	chr6	61180311	61180511	+	986.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164316)	promoter-TSS (NM_001164316)	86.0	NM_183310	232035.0	Mm.150324	NM_183310	ENSMUSG00000039578	Ccser1	6230405M12Rik|C130092O11Rik|Fam190a	coiled-coil serine rich 1	protein-coding	3.12208212005382	3.1028331690584	3.12250634992178	3.47019256410903	2.94743288561902	2.7663271893561	2.73194203099162	2.87806771147558	-1.69990928275927	0.00977163745363925	0.0776527165694527
Merged-chr6-48832663-4	chr6	48832583	48832783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8305.0	NM_023056	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	6.65699104416767	6.81350365436591	7.17765421834642	6.69535590649682	6.71755649154946	6.54440119653046	6.54542057784997	6.36152140912133	-0.414962799135641	0.0688473508358715	0.280410908955871
Merged-chr11-115675781-4	chr11	115675694	115675894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	23740.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	5.31499186598684	4.92294602694667	5.5379105221157	5.70333647946958	5.38809523300485	5.36464178948273	5.09481124496715	5.45533750914377	-0.146290054782803	0.654081794672859	0.855416309539916
Merged-chr17-27586873-3	chr17	27586776	27586976	+	735.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291046, intron 2 of 4)	PB1D9|SINE|Alu	-21149.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	2.55796048203868	2.64191157196247	2.5581528838682	2.69768456899892	3.12114468413029	2.96889779570979	3.33757308995268	3.39676946110516	2.6357545178283	0.000279921736062625	0.00479301160721712
Merged-chr14-118947374-4	chr14	118947267	118947467	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008929, intron 1 of 11)	intron (NM_008929, intron 1 of 11)	9435.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	5.07293297261744	4.90008986302114	4.87125574096021	4.96748838086127	4.91397550917229	4.89183143940958	4.84816835473742	4.90406890701445	-0.128956078424998	0.681865484935747	0.869647747559641
Merged-chr4-122955503-4	chr4	122955390	122955590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029662, intron 3 of 13)	intron (NM_029662, intron 3 of 13)	5698.0	NM_029662	76574.0	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	5.08123541996326	5.63741655772805	5.37172377187603	5.50517267886263	5.89007269353477	5.81194422565218	6.28225546800068	5.91527099457148	0.923276592122796	0.00120001505935011	0.0155738159338803
Merged-chr7-67244101-4	chr7	67243993	67244193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291195, intron 8 of 10)	intron (NM_001291195, intron 8 of 10)	21477.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	6.68342067387028	7.30810959941007	6.58704795337604	6.87208843503694	6.81973333729163	6.9375002417676	6.75509888970064	7.03206994079842	-0.0153108153541536	0.947636296899241	0.981331257394211
Merged-chr4-54642564-3	chr4	54642460	54642660	+	946.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-305385.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	4.17286446118796	4.19752397601061	4.13470044860272	4.50417407424521	2.90299334907967	3.2391846203645	3.10856455330078	3.11608570330192	-6.34534138919183	2.50731345613106e-09	1.49973163440296e-07
Merged-chr6-34368118-4	chr6	34368011	34368211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008012, intron 9 of 9)	intron (NM_008012, intron 9 of 9)	13965.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	7.66061346085285	6.97976950268949	7.10972218208582	7.58311176430086	7.28165206501295	6.9152379452189	6.98755348022108	7.17453051776725	-0.363976746739538	0.114830378998188	0.374966122887971
Merged-chr8-41395499-3	chr8	41395409	41395609	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-20812.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	4.1484225694848	4.44674063124663	4.10896486879219	4.41657033026087	2.91407888270732	3.25321266335836	3.12204593552943	3.12965871152542	-6.3649112084938	2.17759364229778e-09	1.31578045725903e-07
Merged-chr11-78343522-4	chr11	78343401	78343601	+	868.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011676)	promoter-TSS (NM_011676)	6.0	NM_011676	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	4.31055399019767	3.96947114914401	4.26956451262652	3.92284621269616	4.08972615089864	4.2615423775482	4.02106118069365	4.38776156324277	0.201772529935564	0.632421484177786	0.843896532231462
Merged-chr2-31239379-4	chr2	31239316	31239516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CGTG)n|Simple_repeat|Simple_repeat	-6507.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	6.75610879584532	6.45129782659475	6.5675481572198	6.70187134406179	6.23674663931438	6.3616850892376	6.40174304357499	6.56285892227275	-0.348923193509332	0.110779797220414	0.367693876724265
Merged-chr11-120039841-4	chr11	120039772	120039972	+	972.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	1909.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	5.02690783465038	4.85022366677692	4.64519409646011	4.95056097638245	4.56958689768378	4.2898865115749	4.35703767535925	5.05383881434392	-0.574643991086431	0.138587356773712	0.414129487342634
Merged-chr7-90018695-4	chr7	90018577	90018777	+	940.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B1|LTR|ERVK	-10482.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	4.57554197116517	4.23461031779425	4.24823721918689	4.22568313967448	4.19026779037584	4.59325484403624	4.2751300584027	4.335785108716	0.0688118606949586	0.861449015266246	0.947655159768115
Merged-chr4-12501270-4	chr4	12501173	12501373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-329258.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	6.64935821937485	6.36488720184069	6.7676180699959	7.10553509738119	6.83495205026566	6.69840936348107	6.48806417956462	6.41047525298853	-0.199088038358749	0.426124792714163	0.717574028735041
Merged-chr4-86575700-4	chr4	86575596	86575796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178376)	promoter-TSS (NM_178376)	23.0	NM_178376	68441.0	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	7.13663822512086	7.37283161785345	7.05071200433372	7.3420500560513	7.51253148898942	7.55494497335234	7.49047546326953	7.40233072828173	0.333007572380495	0.0684416375441228	0.279374984093172
Merged-chr19-21785941-4	chr19	21785845	21786045	+	904.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031997, intron 2 of 24)	intron (NM_031997, intron 2 of 24)	7605.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	5.54178167646622	4.70834125433014	4.89709159985692	5.26466819074894	4.6013306947685	4.57106135618474	4.55840509248067	4.53063448325995	-1.18715418282212	0.00153846852420702	0.0190645283921539
Merged-chr2-163754491-3	chr2	163754395	163754595	+	949.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4256.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	3.70174816754913	3.55776340197859	3.7502137180332	3.90358520324498	3.40425342335714	3.27730199531471	3.41913201041228	3.65036378585474	-0.97529397676272	0.0567663959398731	0.249591838243941
Merged-chr6-71950829-4	chr6	71950728	71950928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009088, exon 18 of 34)	exon (NM_009088, exon 18 of 34)	41775.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	6.10485702433595	5.58107052646285	6.38193362418208	6.3046748337164	6.19544118404057	6.19709773639616	5.82680007727503	6.29201052768895	0.0112928207323234	0.967845745501692	0.988609900681145
Merged-chr11-86836560-4	chr11	86836464	86836664	+	932.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28904.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	4.42816468625536	4.53399390110723	4.2868829435452	4.36624030436396	4.64902133688629	4.7294700531141	4.68716768363468	4.81004539765529	0.688358306237904	0.0489899240465976	0.228867081212017
Merged-chr13-23585132-4	chr13	23585036	23585236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290530)	TTS (NM_001290530)	834.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	5.51919740077182	5.10677911695341	5.57112178737125	5.1994891319802	5.06983222913014	5.33912654113651	5.56735558409242	5.54196930361175	0.0620946588749129	0.842365899774286	0.940176660530117
Merged-chr19-45076841-3	chr19	45076718	45076918	+	965.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001362398, exon 3 of 6)	exon (NM_001362398, exon 3 of 6)	731.0	NM_001362397	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	3.11259348731385	3.28513864708259	3.11292793913724	3.27222951597482	3.32402141210926	3.29048952154183	3.6382578640513	3.5615587825484	0.897654798219983	0.0947630459332042	0.336869542350274
Merged-chr11-100805674-3	chr11	100805583	100805783	+	716.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 2 of 18)	intron (NM_001113563, intron 2 of 18)	16887.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	3.34956525078808	3.58342296673058	3.34999417359068	3.57700858552071	3.17460858270517	3.52049486149504	3.27932538326652	3.28928397659238	-0.573463305096664	0.281065632008945	0.593153291080506
Merged-chr7-89342134-6	chr7	89342021	89342221	+	917.955566	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 2 of 14)	intron (NM_001360746, intron 2 of 14)	-3334.0	NM_001360745	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	3.87995494545814	4.42681785596736	4.41357626249364	4.13036434588771	4.36023801301867	3.69259091832082	3.9183973798338	3.76378578973945	-0.658339088443567	0.181381985105657	0.477976833030267
Merged-chr4-108456141-4	chr4	108456036	108456236	+	801.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3290.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	3.82791932019997	4.0976208372113	3.94197984673362	4.49142552707721	4.48344619911138	4.31497432041633	4.07861482637129	4.09354461171495	0.301893468913809	0.512645894511348	0.775945692285613
Merged-chr10-128211848-4	chr10	128211734	128211934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025716)	promoter-TSS (NM_025716)	-40.0	NM_025716	66701.0	Mm.29694	NM_025716	ENSMUSG00000051346	Spryd4	4633402N23Rik|AA114801	SPRY domain containing 4	protein-coding	5.63694398237914	5.72292988166659	5.30128548907666	5.43214989102393	6.09799424880642	5.91675344340017	6.12812503086435	5.8096214986889	0.769903107106953	0.00342365569350548	0.0354101116838167
Merged-chr16-27388998-4	chr16	27388925	27389125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026202)	promoter-TSS (NM_026202)	69.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	6.47591194605573	6.52969173383408	6.81497176870457	6.21852127257901	6.53255953532829	6.85427873402489	6.33890724953161	6.05730299497001	-0.0569891562397605	0.829433924990328	0.934551281935698
Merged-chr5-108660790-4	chr5	108660708	108660908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199011)	promoter-TSS (NM_199011)	22.0	NM_001357029	110524.0	Mm.260921	NM_199011	ENSMUSG00000004815	Dgkq	110kDa|DAGK|DAGK7|Dagk4|Dgkd	diacylglycerol kinase, theta	protein-coding	7.1227664620417	7.24706123457615	6.8947695576047	7.20274050689933	7.31641674408862	7.01539428101073	7.33948167029726	6.94452587788292	0.0579421785202118	0.776048809370462	0.912672790071016
Merged-chr10-10461698-4	chr10	10461607	10461807	+	715.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	10607.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	3.68013043966587	3.25812035324357	3.56061485944315	3.31146075613109	4.01157916923323	4.3261876411815	4.24986579954936	3.84044353421753	1.96315056297883	4.58215130696478e-05	0.00104872330507539
Merged-chr5-34773584-4	chr5	34773492	34773692	+	814.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010414, intron 1 of 66)	RMER1B|Other|Other	11852.0	NM_010414	15194.0	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	4.09668894843994	3.80170166002336	3.74452506126316	3.59905185955574	4.08885750571767	4.08112762998726	4.1216124248469	4.09473473576667	0.79764678336282	0.0680267280596614	0.278429511752
Merged-chr6-15726634-4	chr6	15726533	15726733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	5972.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	6.10163043477202	6.66802250702791	6.50816930542283	6.40655568951872	6.4945224809171	6.23494201283603	6.11412259552937	6.11975754963592	-0.267898016007634	0.276530618339029	0.58850603608066
Merged-chr15-79687919-4	chr15	79687831	79688031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028792)	promoter-TSS (NM_028792)	-59.0	NM_028792	74158.0	Mm.323393	NM_028792	ENSMUSG00000022426	Josd1	1300006C06Rik|mKIAA0063	Josephin domain containing 1	protein-coding	7.27349989911367	7.15073832096114	6.73350356846641	7.02813085429378	7.56855771233568	7.39816676417865	7.1180092335425	7.34085648148428	0.421353849478019	0.0432595894805795	0.211641891107403
Merged-chr13-102645028-3	chr13	102644934	102645134	+	852.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48513.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	3.1867256554891	3.22092432774068	3.12768219332699	3.09528698203088	3.0593483497808	3.17506168494732	3.23129177631867	3.2965223834005	0.133686786872388	0.80606123586168	0.925322678935546
Merged-chr19-5592056-4	chr19	5591955	5592155	+	856.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9818.0	NM_026616	68209.0	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	4.40111729710033	4.28727343512019	4.22897788081733	4.40237013926332	4.31124992535849	4.30719647377735	4.29913498408045	4.17948134271946	-0.14769725068958	0.698325563894884	0.878303994693932
Merged-chr15-95805215-4	chr15	95805126	95805326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	14383.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	7.54062630889828	7.92606228974201	7.56857076806015	7.35872949660046	7.7045168251067	7.60657741651032	7.16762909120064	7.25608593711391	-0.202473732662589	0.354562007701776	0.661235338019879
Merged-chr13-80883338-4	chr13	80883224	80883424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153410)	promoter-TSS (NR_153410)	-60.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	7.52159734210825	7.25400450688503	7.22136421899829	7.17484481760847	7.70276547549169	7.41010158583001	7.50344225130948	7.47224044008748	0.322423469012527	0.0843288555044851	0.315948423055718
Merged-chr8-69973789-4	chr8	69973698	69973898	+	828.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 1 of 12)	CpG	585.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	3.68652450522944	3.73529133164674	3.89035729101392	3.79077098881842	3.68386095032238	3.68896900264952	3.72593800759981	4.06283629589946	0.0570182693855373	0.901257717313186	0.963342914941175
Merged-chr14-118986858-4	chr14	118986741	118986941	+	790.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081252, exon 39 of 39)	3' UTR (NM_001081252, exon 39 of 39)	48909.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	3.88583448546049	4.2644830547244	3.8325426485789	3.81245998751031	4.29644110195577	4.06056225499935	3.76212168776207	4.07932869365196	0.298265328917049	0.511993826743118	0.775668292015302
Merged-chr2-29623533-6	chr2	29623474	29623674	+	991.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	3854.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	4.15731651234354	4.23421743121928	4.50444295167958	3.7443136463673	3.92270115517799	4.03886633776517	3.60490887421486	4.15532323526867	-0.621030173583844	0.201622313744847	0.50415510516587
Merged-chr2-118260015-4	chr2	118259926	118260126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3060.0	NM_027759	71313.0	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	6.22930982811119	6.11099442080975	5.54623739877689	5.87182338039273	6.03979493044947	6.40434229848371	5.98126305754201	6.05032469420038	0.255228141952579	0.343130805996263	0.651847936494656
Merged-chr15-38301780-3	chr15	38301749	38301949	+	922.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1138.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	4.21668851724453	4.24149679334653	4.43215620746621	4.10961421620218	4.11249537586919	4.24608169691171	4.48731883157119	4.42926081722432	0.187251016142219	0.637129896825103	0.846608339576867
Merged-chr4-130922139-4	chr4	130922005	130922205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	8771.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	5.3247609708298	5.32797678390236	5.76088764549157	5.80275663164986	5.51851876965676	5.50328017998428	5.84082350101105	5.53074970144574	0.0280302182089215	0.924000277172222	0.971896610092346
Merged-chr4-132261595-4	chr4	132261503	132261703	+	969.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020273)	promoter-TSS (NM_020273)	-54.0	NM_001122992	56809.0	Mm.103489	NM_020273	ENSMUSG00000028901	Gmeb1	1110050A04Rik|AI256615|AI481278	glucocorticoid modulatory element binding protein 1	protein-coding	5.31703725381619	5.13934492997252	4.54978359126421	4.66667282875448	4.89111992150914	4.94592096193331	5.15383886918524	4.91768783349632	0.0632535145155222	0.861621310275	0.947771457510767
Merged-chr15-27874085-4	chr15	27873977	27874177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 10 of 56)	intron (NM_001081302, intron 10 of 56)	151771.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	6.17355527202556	6.19610375297539	6.63615017948699	6.64077120395465	5.67550538427378	5.98720225535781	6.03975261089529	6.15014707648257	-0.727902755134432	0.00531641955148811	0.049745948107713
Merged-chr10-111102455-4	chr10	111102384	111102584	+	914.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62318.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	4.33476116366121	3.82091623698579	3.86018287982328	4.37870216806025	3.85873790884866	4.29189589472055	4.23400013560843	4.25073666880083	0.0726259013922865	0.87419295650093	0.952832392676241
Merged-chr8-8441195-3	chr8	8441108	8441308	+	818.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	219565.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	3.85564117095595	3.74837350915894	4.03788398889635	4.03969187045444	3.54267786901544	3.50736431837249	3.79066184870428	3.90177179535239	-0.705315132802204	0.138047726215564	0.413364986929351
Merged-chr6-134021013-4	chr6	134020901	134021101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14699.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	6.6299092025376	7.00284375262772	6.40816647341157	6.40726916806843	7.00540982032272	6.8836238052587	6.7306767604789	6.54524819601542	0.251148577428401	0.297270268386293	0.609412183792746
Merged-chr2-51014455-4	chr2	51014363	51014563	+	976.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104779.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	4.41322553693576	4.85669789113066	4.75942529312848	5.07503044623179	4.86479004008644	4.85561755659672	4.97571796509323	4.45966107882448	-0.0218518495028155	0.953473145047875	0.983444766711298
Merged-chr13-5592056-4	chr13	5591964	5592164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	266028.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	5.73295597771055	5.60614335381105	5.36097625475505	5.16559995991264	5.66413611349561	5.26705173448386	5.70470049413602	5.6090596287155	0.187120165034433	0.532963191619339	0.788398805429988
Merged-chr9-35546931-4	chr9	35546816	35547016	+	968.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013932, exon 9 of 12)	exon (NM_013932, exon 9 of 12)	11554.0	NM_013932	30959.0	Mm.291723	NM_013932	ENSMUSG00000032101	Ddx25	AW047046|GRTH	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	protein-coding	4.90454030622243	4.8818805712903	5.0482589098139	5.56081594281487	4.70620484195614	4.96530157855466	5.18100958824138	5.23274240612431	-0.229698968488556	0.528983294183172	0.785359737535491
Merged-chr17-5929176-4	chr17	5929030	5929230	+	851.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 17 of 17)	intron (NM_025664, intron 17 of 17)	-12150.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	3.65408456458993	3.60982068701956	3.75608392933955	3.5913448408119	3.76331774106328	3.77208127709609	3.47332428618314	3.65254546937328	0.0771773153010238	0.869832030631493	0.951114878154095
Merged-chr5-108449013-5	chr5	108448906	108449106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172883)	promoter-TSS (NM_172883)	94.0	NM_001359977	243197.0	Mm.106818	NM_172883	ENSMUSG00000029490	Mfsd7a	4732482E20Rik|Mfsd7|Slc49a3	major facilitator superfamily domain containing 7A	protein-coding	5.00802869536096	5.140962171285	5.04289934885696	5.03508290301033	5.11676163116087	4.96035217615299	5.01851505460446	5.07260168063024	-0.0171688702350477	0.954736447492797	0.983838959554429
Merged-chr9-118926271-6	chr9	118926132	118926332	+	818.422241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133710)	promoter-TSS (NM_133710)	-304.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	3.9255402206587	3.80880952930652	4.06201292529901	3.38091933918757	3.99423504088307	3.72214114359529	3.58915619073368	4.18182690756546	0.24039325334778	0.638786271950625	0.847385579722562
Merged-chr6-84096026-4	chr6	84095931	84096131	+	783.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 17 of 54)	intron (NM_001077694, intron 17 of 54)	76645.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	3.95418558796867	3.66018590340261	3.43668642217246	3.90976577459093	3.90118349510209	4.33951444493725	3.67762780565354	4.12961023846061	0.739243260987941	0.137751636658905	0.412843105083967
Merged-chr11-74839128-4	chr11	74839028	74839228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 4 of 5)	intron (NM_010813, intron 4 of 5)	8204.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	6.94722439143164	7.21713861873763	6.46995537934147	6.45649333292439	6.8791562852703	6.99388989305309	6.5242258935793	6.75620844137123	-0.0120556282986769	0.96264107454722	0.986677644829672
Merged-chr2-18872949-4	chr2	18872867	18873067	+	699.012512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355147, intron 3 of 8)	intron (NM_001355147, intron 3 of 8)	-71149.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	4.00589835422902	3.75662722377703	3.37049959943371	3.68626993520884	4.00194903326335	4.13084536751391	3.94242566421014	4.17509274666955	0.952418165049962	0.0411878428114364	0.205330540935371
Merged-chr7-126595040-4	chr7	126594974	126595174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145636)	promoter-TSS (NM_145636)	-164.0	NM_145636	246779.0	Mm.222632	NM_145636	ENSMUSG00000044701	Il27	IL-27|IL-27p28|Il30|p28	interleukin 27	protein-coding	5.20314885529168	5.2933018590929	5.30060736494735	5.41232409378828	5.51655882642161	5.69918657021588	5.41958357912919	5.20048001849033	0.277426152202449	0.3365112608811	0.646470196956367
Merged-chr4-107889963-5	chr4	107889818	107890018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347160)	promoter-TSS (NM_001347160)	19.0	NM_028754	74098.0	Mm.274853	NM_028754	ENSMUSG00000028608	0610037L13Rik	1110008H16Rik	RIKEN cDNA 0610037L13 gene	protein-coding	6.58000184209396	6.86427345279191	6.72000255364314	6.67771994010122	6.43240136814091	6.72500732389188	6.67115932162594	6.891885226649	-0.0473806873648279	0.825962052297718	0.933192903499988
Merged-chr4-125030003-4	chr4	125029903	125030103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145552)	promoter-TSS (NM_145552)	-11.0	NM_145552	230737.0	Mm.90760	NM_145552	ENSMUSG00000028869	Gnl2	BC003262|HUMAUANTIG|Ngp-1	guanine nucleotide binding protein-like 2 (nucleolar)	protein-coding	7.6128750385851	7.58540210495129	7.10827698684949	7.21589709036287	7.60973278250839	7.76560999014373	7.86972513279952	7.4362230413716	0.376590287109946	0.0676116688432093	0.277554589102992
Merged-chr2-58978276-4	chr2	58978156	58978356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 9 of 13)	intron (NM_001362394, intron 9 of 13)	182427.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	6.92695496381217	6.79014684050585	7.43972022266584	7.29207639271087	6.67661748393763	6.93695061643013	6.66341934062549	7.03645770073962	-0.429082964228579	0.0645932307843186	0.270165799388707
Merged-chr17-26638857-4	chr17	26638764	26638964	+	959.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 8 of 9)	intron (NM_026170, intron 8 of 9)	-37532.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	4.74285445960584	4.66866843233997	4.49350887157721	4.93295409882379	4.72700299906548	4.83934675376669	4.64399090146922	4.98089290396528	0.132707648743558	0.705602876727299	0.881790297238375
Merged-chr1-40324513-4	chr1	40324428	40324628	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133193)	promoter-TSS (NM_133193)	-61.0	NM_001356478	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	5.07649353156763	4.75421601107026	4.90531012278391	4.80114332348147	4.83603138280428	5.37058969513219	5.11460724452746	5.04130527766896	0.416402735456345	0.205257207882498	0.508859472252119
Merged-chr10-117677199-4	chr10	117677108	117677308	+	924.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027468, intron 7 of 8)	intron (NM_027468, intron 7 of 8)	33550.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	5.07256146401971	4.61728848820779	4.70411534154569	5.16536265112669	5.17271060592277	4.83985021718347	5.07993131494879	5.19191671666557	0.301603457374934	0.382543013514535	0.684593683284334
Merged-chr4-109255405-4	chr4	109255268	109255468	+	969.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001285895)	TTS (NM_001285895)	19736.0	NM_001033226	108802.0	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	4.01147800021881	4.24020003842572	4.50987916816634	3.91424282940649	4.3009174012624	4.52221968593658	4.14973647008765	4.61439848021415	0.554219622005763	0.18959794234671	0.488556345737121
Merged-chr5-92525099-4	chr5	92524951	92525151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19394.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	6.67799968640023	6.30536271174178	6.73650319310616	7.12735101494712	6.52924768051169	6.15162021383081	6.52245225655466	6.48491959516523	-0.468652188345409	0.0686710582611583	0.279966622141645
Merged-chr10-31313472-4	chr10	31313368	31313568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027168)	promoter-TSS (NM_027168)	63.0	NM_027168	69692.0	Mm.245537	NM_027168	ENSMUSG00000000295	Hddc2	2310057G13Rik	HD domain containing 2	protein-coding	7.66978731651119	7.65098133637685	8.3035659237707	7.75429426047265	7.38312510182503	7.677983950535	7.69887282458036	7.62310594854373	-0.357475218608883	0.0902848362950264	0.328144626360482
Merged-chr6-51557429-3	chr6	51557320	51557520	+	778.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 1 of 6)	ORR1A3|LTR|ERVL-MaLR	12127.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	3.53042730013563	3.30263172785262	3.30882754291387	3.44224674955399	3.55092011788799	3.64695181822568	3.17197069119039	3.36628477175546	0.1625255206457	0.758047318403584	0.904926340425875
Merged-chr15-82138772-4	chr15	82138669	82138869	+	843.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_137170, intron 5 of 5)	intron (NR_137170, intron 5 of 5)	-8500.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	3.91432882278676	4.21696294460371	3.73885111323827	4.01593528215326	4.12242485554178	4.33626749217646	4.1904103837732	4.48123436785444	0.750369240424215	0.0779880851797447	0.30203225915491
Merged-chr6-21959521-2	chr6	21959421	21959621	+	967.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311061, intron 4 of 11)	Lx9|LINE|L1	9906.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	2.81369615793997	2.60479907638326	2.93388251730127	2.50045624534672	2.69303011243679	2.8584935273099	2.80370030841654	2.98806189876818	0.576194894932432	0.378890275205557	0.681389119075475
Merged-chr9-107548266-4	chr9	107548176	107548376	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053253, intron 2 of 11)	intron (NM_053253, intron 2 of 11)	966.0	NM_053253	114602.0	Mm.28331	NM_053253	ENSMUSG00000010044	Zmynd10	Blu	zinc finger, MYND domain containing 10	protein-coding	4.0839955248484	4.13942528138455	4.20616247183853	4.06776215504159	5.48196051635751	5.19474646803271	5.32590884205048	5.39835749063492	2.56423590342544	8.82291847596367e-14	1.17281018472696e-11
Merged-chr15-35296038-4	chr15	35295954	35296154	+	897.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054049)	promoter-TSS (NM_054049)	-58.0	NM_054049	107587.0	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	4.09678416919005	4.29435204816665	4.53224673357112	4.37038285240608	4.00495647339802	3.48130508891042	3.87810128116871	4.0949023522091	-1.16740114173809	0.0135477085952368	0.0977508717790535
Merged-chr11-109362737-4	chr11	109362663	109362863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010303)	promoter-TSS (NM_010303)	-31.0	NM_010303	14674.0	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	7.16190016063969	7.37845228334619	7.27886021217999	7.0567914360825	7.8593314163937	7.83481987260997	7.61191194110534	7.81308034663511	0.754820178327931	2.78181732201106e-05	0.000680670248069525
Merged-chr19-3851770-4	chr19	3851671	3851871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013490)	promoter-TSS (NM_013490)	-2.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	7.68167532823395	8.1085210484157	7.57727496034477	7.51101333000546	7.83353599501283	8.23050319931464	7.75039156792492	7.73547480833524	0.210925525517022	0.32130730279766	0.633056953827648
Merged-chr9-99130687-3	chr9	99130562	99130762	+	857.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 1 of 23)	MIR|SINE|MIR	9549.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	3.64510825407566	3.81476352397655	3.69959918096571	3.58370394709905	3.75467050280584	3.51920521160564	3.83246906883056	3.93741613101845	0.264637061934485	0.570946188744342	0.810291876393379
Merged-chr10-26828566-4	chr10	26828472	26828672	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	L3b|LINE|CR1	56060.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	5.45667455022191	4.9084358987314	5.32335182881749	5.21373253872984	5.14339130016649	4.94364186094727	5.17882266612697	5.26166339232119	-0.178241136497121	0.569491622610572	0.809382816358399
Merged-chr4-107879751-4	chr4	107879666	107879866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282737)	promoter-TSS (NM_001282737)	11.0	NM_001282737	17149.0	Mm.808	NM_001282737	ENSMUSG00000028609	Magoh	Mago-m|Mos2	mago homolog, exon junction complex core component	protein-coding	7.07357577090991	7.08293475767398	6.53315187726243	6.91319892404053	7.43455701671618	7.32073393817457	6.99080137808661	7.0089072595123	0.395632480243333	0.0758673144863431	0.29757863987565
Merged-chr15-64132143-2	chr15	64132043	64132243	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 15 of 28)	intron (NM_001276461, intron 15 of 28)	-71695.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	2.60804337880969	2.71468543457563	2.67835236686814	2.77107643685141	2.61340230899692	3.03626558190559	2.79810165274595	2.92474999850634	0.683949256751797	0.289614614364872	0.60165506075493
Merged-chr4-139330768-4	chr4	139330659	139330859	+	948.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20015.0	NM_025337	110198.0	Mm.482154	NM_025337	ENSMUSG00000028743	Akr7a5	0610025K21Rik|Afar|Afar1|Akr7a2	aldo-keto reductase family 7, member A5 (aflatoxin aldehyde reductase)	protein-coding	5.37120774743577	5.30167149762767	4.9034405956519	4.20922597550555	6.00685661948197	5.84388073261964	5.61513554076858	6.00008017604714	1.50651536305097	4.76897263638579e-05	0.00108520045807322
Merged-chr1-92708410-4	chr1	92708300	92708500	+	924.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59559.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	4.97614673579298	4.65822767480908	5.04129895001919	5.282676107866	4.65817803649346	4.81601364638034	4.88551585280909	4.54718740435824	-0.595766313005569	0.0935774831699207	0.334643874324346
Merged-chr8-36122777-6	chr8	36122664	36122864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172911, intron 3 of 5)	intron (NM_172911, intron 3 of 5)	27936.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	6.19037632951752	6.56983314556642	6.81892547606049	6.47187501082586	6.31629463379108	6.79802856183323	6.30054929448326	6.77450749420841	0.0467922190948766	0.852431454948281	0.944510839861624
Merged-chr11-3910763-4	chr11	3910656	3910856	+	916.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153142, intron 1 of 1)	intron (NM_153142, intron 1 of 1)	3908.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	4.83979778522545	4.71779305951072	4.80534040883172	4.92578845150272	4.46693446643638	4.70292615526138	4.63211149773121	4.76590440724437	-0.410680171854293	0.22920654679051	0.538064210405535
Merged-chr6-29785967-4	chr6	29785872	29786072	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	L1M2|LINE|L1	17529.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	4.22627525944496	4.91016731848723	4.75460529568017	4.98602442151804	4.3465953078086	4.77538668375058	4.26192757149574	4.8551730481464	-0.386215865671	0.352691074376024	0.659679630621423
Merged-chr1-106200060-6	chr1	106199971	106200171	+	821.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	28202.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	4.21194787800372	4.22826580828637	4.38125349546072	4.13849165407719	4.01545935389632	4.29241701325586	4.1016031432152	4.25423011347398	-0.181398355822596	0.650750517580472	0.853474555772045
Merged-chr6-140817030-4	chr6	140816927	140817127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_A_Mam|LINE|RTE-X	190142.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	6.8793847154427	6.60747648351648	6.62794291226451	6.78244800592686	7.25938589817772	7.14776757070384	7.05506675296402	6.83467810988885	0.49933223654033	0.0149802266371004	0.104724390451929
Merged-chr2-166745985-4	chr2	166745882	166746082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32150.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	5.59832041282294	5.87015648419531	5.72908666806898	5.58282893042817	5.98696614467135	5.71944178647419	5.83923790127799	5.48206515333725	0.142499612317933	0.598640162862397	0.825987886019831
Merged-chr1-60977872-4	chr1	60977777	60977977	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017480)	promoter-TSS (NM_017480)	-37.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	4.30060939079284	3.92044350787999	4.03023336596424	4.50662799622414	4.26183858785587	3.99155444232588	3.85524278080379	4.25724753543805	-0.292124023818151	0.517888242673135	0.779126927276672
Merged-chr1-186704509-3	chr1	186704419	186704619	+	817.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001329107, exon 1 of 8)	exon (NM_001329107, exon 1 of 8)	1470.0	NM_009367	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	2.9743117785005	2.75338723551861	3.13945265101536	2.44848402203677	2.51137174775492	2.82807841254736	2.77654530093425	3.13740443080297	-0.097258368364776	0.892735408358466	0.959851546084039
Merged-chr3-127487438-3	chr3	127487349	127487549	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	11666.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.28268290130766	3.17361782309822	3.44746466931266	2.45409210541378	4.96055909267041	4.50441697435604	4.85135976995601	5.17630857594889	6.88920608472534	7.96869077598992e-08	3.47338298067475e-06
Merged-chr1-165675296-4	chr1	165675203	165675403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	32791.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	8.15938653951752	8.74084062028424	8.28037284702349	8.38132146920072	8.23524337711316	8.4466675830911	8.26964514004655	8.1427109897337	-0.171565503857568	0.352187164325666	0.659353818166894
Merged-chr17-47395643-5	chr17	47395504	47395704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008189, exon 2 of 4)	exon (NM_008189, exon 2 of 4)	5002.0	NM_008189	14913.0	Mm.16224	NM_008189	ENSMUSG00000023982	Guca1a	GC-A|Gcap1|Guca1|mGCAP1	guanylate cyclase activator 1a (retina)	protein-coding	5.49415321667491	5.26335963481307	5.11642958449105	4.92810615768086	6.07972219982647	6.27711509217744	6.03379565040153	6.33448469632828	1.64372109351689	1.96810585706782e-09	1.19630919556132e-07
Merged-chr11-77508270-4	chr11	77508163	77508363	+	955.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001004144)	TTS (NM_001004144)	5010.0	NM_001024920	216964.0	Mm.341211	NM_001024920	ENSMUSG00000044328	Trp53i13	2410019G02Rik|Tp53i13	transformation related protein 53 inducible protein 13	protein-coding	4.85669104174243	4.72991128088921	4.09259423276727	4.79658919847362	4.87327817712802	4.80916799494017	4.72868825688358	4.71067433594127	0.257909514323959	0.498679139691952	0.767768698826212
Merged-chr10-84390933-3	chr10	84390841	84391041	+	953.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 4 of 6)	intron (NM_001004363, intron 4 of 6)	49530.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	3.25611592768395	3.43372240775422	3.71484571618025	3.24834646383078	3.2443192794903	3.43034274784235	3.24491437774984	3.1923576296957	-0.505563704578742	0.356844192398058	0.663180490096641
Merged-chr3-65391790-1	chr3	65391690	65391890	+	799.25	f0_balb.idr	intron (NM_026155, intron 1 of 4)	intron (NM_026155, intron 1 of 4)	763.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	3.38238864693269	3.49588491320941	3.92564769579613	3.58440602226841	3.62951618974379	3.85505277182022	3.66717284099332	4.04921387099284	0.590777903780003	0.233575536474965	0.543270413569238
Merged-chr7-25788347-2	chr7	25788247	25788447	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 1 of 19)	intron (NM_009465, intron 1 of 19)	386.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	3.95758157996175	4.08556375832906	3.90715825738097	4.0551249834571	4.15272287446767	4.02785681096725	3.99044745978136	4.05220237975933	0.140384065477222	0.73445250006215	0.895054085885471
Merged-chr12-76948903-4	chr12	76948835	76949035	+	960.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	13313.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	4.75174144942504	4.71341805393217	5.09290177662807	4.99145823452598	5.04942389223116	4.57803093013338	4.52091033773131	5.02834006058115	-0.146053924138299	0.686280000682844	0.871787672169905
Merged-chr15-62108312-1	chr15	62108212	62108412	+	901.0	f0_balb.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	69055.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	3.5771910630991	3.34574033298093	3.41349881145612	3.76376552993057	3.15460531174565	3.58666517500344	3.21569999376237	3.76569592259128	-0.298227381239336	0.597342121300554	0.825256992211092
Merged-chr5-114691058-4	chr5	114690986	114691186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019821)	promoter-TSS (NM_019821)	-151.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	7.29722467270189	7.17513610508936	7.17696569178893	7.06051760622882	7.62825514046113	7.43282289042375	7.62382742535424	7.22860817237199	0.431897094102709	0.0227985351137669	0.139482718089567
Merged-chr14-121426030-2	chr14	121425930	121426130	+	916.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-46800.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	3.19540557463209	3.08040509837817	3.13874743640736	3.02729232062058	2.94286160505504	3.12589595469651	3.18326005211151	3.19408108381425	0.016745498409743	0.976216302809955	0.991528225629167
Merged-chr16-91411023-4	chr16	91410918	91411118	+	986.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 2 of 6)	MTE2a|LTR|ERVL-MaLR	4783.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	4.55401847915685	4.91760045498719	5.49351694781195	5.26431864062839	4.84088369222372	4.59001658640659	4.97139116320646	5.02584800572567	-0.471396319002191	0.211161983763858	0.515762969934016
Merged-chr4-95050777-4	chr4	95050697	95050897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010591, exon 1 of 1)	exon (NM_010591, exon 1 of 1)	1425.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	6.6944293706298	6.63032794141343	6.78408706353512	6.70307672379298	6.83296957820035	6.90243573389393	7.06164157547351	6.86186972723558	0.29938263430933	0.125325631572997	0.392906674142633
Merged-chr6-32479873-4	chr6	32479718	32479918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-31323.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	5.27308596942565	5.00281919133761	5.82199956058969	5.76544353091546	5.12256900222855	5.13788210738706	5.36601141922226	5.10411087702806	-0.597065479330564	0.0756131226854925	0.297056322973323
Merged-chr3-97211410-4	chr3	97211305	97211505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029933, intron 7 of 9)	intron (NM_029933, intron 7 of 9)	15959.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	7.1722453220111	7.49730302581796	7.81406545605992	7.72118497462428	7.66692540480396	7.67431320156383	7.67671082757094	7.8161133079595	0.169344625169785	0.390603367739105	0.69058015678842
Merged-chr16-11014728-4	chr16	11014628	11014828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040518, exon 3 of 3)	non-coding (NR_040518, exon 3 of 3)	5830.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	6.77438430472036	6.45577990489194	7.25709853152457	7.40508984371758	6.96186577606865	6.86040405378621	7.20014978491794	7.29233547421488	0.0706774692591966	0.787711507313137	0.917681714279383
Merged-chr14-70066170-4	chr14	70066063	70066263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11282.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	9.06757173806612	9.16671990463926	9.07569746242608	8.88960311136045	9.03255829396411	9.10746786943904	9.23950217114867	9.07345680869325	0.0795859608363932	0.587568876005222	0.819279208297596
Merged-chr13-64048700-4	chr13	64048606	64048806	+	958.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40495.0	NM_008291	15487.0	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	5.23347632677056	4.79548889831332	5.1773790435227	5.2925374725157	4.75847992279346	4.5313111088879	4.74517104937775	5.01887171790615	-0.731874407550827	0.0337939455796794	0.181271756184471
Merged-chr14-74797669-3	chr14	74797612	74797812	+	862.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 13 of 19)	intron (NM_001033439, intron 13 of 19)	65415.0	NM_016903	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	3.6209770158835	3.43971412912103	3.8481912422214	3.84693113031188	3.24508054307713	3.2508576461951	3.50288219649103	3.56803405991216	-1.06215364707131	0.0465249154903622	0.221678989225021
Merged-chr13-93718253-3	chr13	93718161	93718361	+	945.6222529999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028772, intron 13 of 15)	MTE2a|LTR|ERVL-MaLR	914.0	NR_045086	105364.0	Mm.443795	NR_045086	ENSMUSG00000087334	AW495222	-	expressed sequence AW495222	ncRNA	3.21699528611894	3.04404420100015	3.3710508655854	2.65539466326297	4.4399318526782	4.32094354795098	4.27975809575054	4.47310134445899	4.88755382332115	8.73808333636033e-16	1.59071108388438e-13
Merged-chr4-115052835-4	chr4	115052744	115052944	+	976.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3582.0	NM_011527	21349.0	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	4.8431682193243	4.80520608587991	5.46554851964199	5.21206258837821	5.05788239783039	4.98199978935965	5.30970154486964	5.06089771709616	-0.0106011904179703	0.974904585242287	0.990999149893046
Merged-chr17-43569500-4	chr17	43569391	43569591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	1040.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	6.28683880225189	6.66786188272157	6.69892323702366	6.53790954890405	6.28683919945035	6.12568411550945	6.03233293053205	5.67144957423915	-0.751692852012665	0.00292600394438514	0.0313470853036408
Merged-chr14-111674843-3	chr14	111674757	111674957	+	727.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198865)	promoter-TSS (NM_198865)	-258.0	NM_198865	75409.0	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	3.31063753831489	3.4418708720148	3.53254085591793	3.53905361660777	3.22806033214004	3.2953989294573	3.4133050459155	3.58023767207164	-0.284085517137881	0.585521336447123	0.818172766912737
Merged-chr12-8508472-1	chr12	8508372	8508572	+	541.0	f0_c57.idr	Intergenic	RLTR28|LTR|ERVL	-8463.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	2.55811203504781	2.61323470428552	2.48075433744076	2.126549918253	3.11344600882642	3.00632235563903	2.93703748747507	2.8905686914454	2.94762594226682	0.000344264400555741	0.0056749411225468
Merged-chr16-29606842-3	chr16	29606727	29606927	+	845.3444820000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133752, intron 7 of 28)	intron (NM_133752, intron 7 of 28)	27493.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	4.59350294945269	4.28638063553172	4.403326856145	5.01635784591241	3.91950048294869	3.97136242636182	4.2541450381585	3.96439879654669	-1.45695272759157	0.0010033777423636	0.0134804500422232
Merged-chr8-86884265-4	chr8	86884155	86884355	+	849.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	1003.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	4.28228041892831	3.79565773236168	4.23943245471573	3.70761389631893	4.49425172523179	4.0102678100708	4.34514303522202	4.51366253610594	0.861223464902551	0.0540730873745435	0.242784853733213
Merged-chr8-72350924-3	chr8	72350836	72351036	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007944, intron 22 of 23)	intron (NM_007944, intron 22 of 23)	31874.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	4.86010248621197	5.07353564617401	5.27875035604318	5.41775831721757	4.4028938139732	4.37060121759147	4.32822296870721	4.39544118536523	-1.73312180494501	2.31696311529542e-06	7.4556563102899e-05
Merged-chr12-75572476-1	chr12	75572376	75572576	+	622.0	f0_balb.idr	intron (NM_012024, intron 2 of 13)	intron (NM_012024, intron 2 of 13)	23724.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	2.93398111311762	3.1421674439256	2.87443315520731	3.07011322120557	2.59530973401247	2.91871450563844	2.66884528812413	2.60209780994696	-1.54068209236463	0.0228645939913332	0.139793758435759
Merged-chr16-20324132-1	chr16	20324032	20324232	+	551.0	f0_balb.idr	intron (NM_183158, intron 1 of 8)	intron (NM_183158, intron 1 of 8)	1272.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	2.84401928123868	2.7932197741671	2.95793453052554	2.84338160257967	2.36847240724941	2.68813279170097	2.50212537954043	2.90076676634483	-1.17237924538656	0.105599907537928	0.357809102615421
Merged-chr8-94485476-2	chr8	94485374	94485574	+	854.466675	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033207, intron 11 of 48)	B3A|SINE|B2	12711.0	NM_001033207	434341.0	Mm.334720	NM_001033207	ENSMUSG00000074151	Nlrc5	AI451557|AK220210|NOD27	NLR family, CARD domain containing 5	protein-coding	3.36796766280653	3.04196209680205	3.08163790135776	2.97902739573693	3.03932276700892	3.25567517540118	3.24844815935377	3.55281051033165	0.639698788222758	0.266598140688065	0.578235316865616
Merged-chr9-96723861-4	chr9	96723764	96723964	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175537, intron 1 of 2)	intron (NM_175537, intron 1 of 2)	-4014.0	NM_001359959	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	4.99284338030706	4.89240928914723	5.24400333825263	5.03719041544312	5.00940402164336	4.90351785129215	5.16019996986053	4.91925391227163	-0.0790653704138031	0.801411595314611	0.923365533732052
Merged-chr9-71959708-1	chr9	71959608	71959808	+	703.333313	f0_balb.idr	intron (NM_011544, intron 5 of 20)	intron (NM_011544, intron 5 of 20)	-63612.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	3.82605968021712	3.63189248153144	3.77894428071327	3.6212618043397	3.59771461588697	3.74073013637812	3.6096551736381	3.72710396947606	-0.132107989042432	0.776238881521575	0.912832199111554
Merged-chr11-115412859-4	chr11	115412777	115412977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347645)	TTS (NM_001347645)	7042.0	NM_027862	71679.0	Mm.371641	NM_027862	ENSMUSG00000034566	Atp5h	0610009D10Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	protein-coding	5.86814320989958	5.55147022389838	5.30278666914847	5.48938845962362	5.49862299619867	5.41434273395141	5.48430131079313	5.58807527211527	-0.1112398013286	0.693248680084806	0.875262817171833
Merged-chr1-165660942-3	chr1	165660844	165661044	+	870.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 2 of 5)	intron (NM_001038846, intron 2 of 5)	-26403.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	4.18504804540835	4.03808105356376	3.96704328281453	3.32875939073991	3.98542765763503	3.88228398826847	3.90154369562125	3.86561875463718	-0.000809510221344203	0.998725581145451	0.999449015879545
Merged-chr11-117332391-4	chr11	117332275	117332475	+	875.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113488)	promoter-TSS (NM_001113488)	62.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	4.50981416998133	4.37105620277206	4.04948690260467	4.08626393382378	4.14787610300496	3.890916759717	4.0815772197697	4.23449323703701	-0.412140925569908	0.333374629665018	0.644131513179354
Merged-chr10-19584309-4	chr10	19584209	19584409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7640.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	5.84500928748955	5.79116392027148	5.95726671106109	6.00510026852796	5.6533652848684	5.70856416050488	6.02813331906044	5.69421641931023	-0.216775948922906	0.39717314609579	0.695612493933522
Merged-chr10-89747668-4	chr10	89747507	89747707	+	962.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029166, intron 1 of 20)	intron (NM_029166, intron 1 of 20)	2616.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	4.40889556953113	4.33377187605704	4.2776925594669	4.57086847730903	4.43818925585194	4.20276894730093	4.25919604777882	4.56345331768404	-0.0876509441175704	0.820564618260603	0.931246110287796
Merged-chr19-16046048-4	chr19	16045942	16046142	+	903.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60967.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	4.16305913396171	3.85816376098809	4.83444479233845	4.37029987869434	4.42226633923549	3.75274894157723	4.55716496097379	4.25567824059889	-0.17054469753505	0.732816547202891	0.894223505002294
Merged-chr9-59727621-4	chr9	59727526	59727726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	19862.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	6.54258642252972	6.15657675221276	6.05384594887493	6.5587080425976	6.30875408863225	6.27707390906792	6.57089425181892	6.62929062957459	0.138947277199653	0.573269091306923	0.811775765927973
Merged-chr6-97296537-1	chr6	97296437	97296637	+	868.0	f1_c57bl6.idr	intron (NM_145148, intron 21 of 23)	B4A|SINE|B4	-43757.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.30021447745531	2.43547779988367	2.30040540738919	2.26011651211565	2.51100418085504	2.62443876241592	2.57234954243678	2.91402005870924	1.86532134150647	0.00868155219760931	0.0712985120426483
Merged-chr9-45202549-4	chr9	45202450	45202650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	1525.0	NM_145403	214523.0	Mm.436756	NM_145403	ENSMUSG00000032091	Tmprss4	mCAP2	transmembrane protease, serine 4	protein-coding	4.90864052706388	5.03033996046187	5.30562163582176	4.69037154261084	4.71526428431274	4.23428594384873	4.62974976569436	4.32694588011625	-1.03644354595149	0.00836916136232262	0.0692845471747804
Merged-chr8-71507802-4	chr8	71507691	71507891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_032398, exon 3 of 6)	exon (NM_032398, exon 3 of 6)	3978.0	NM_032398	84094.0	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	5.99865119025245	5.99336211587383	5.64887097095269	5.99010465320444	6.80460098314425	6.73893487518242	6.58878263615492	6.68828208095327	1.16771524044903	2.39059167044512e-07	9.45332913947851e-06
Merged-chr8-85555332-4	chr8	85555225	85555425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019794)	promoter-TSS (NM_019794)	-54.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	6.8010342701189	6.63528989534771	6.58506803566331	6.52223651997407	7.05171168349319	7.29163476433272	6.97624521023481	7.08837718185793	0.663309298863984	0.00088328054032549	0.0121937598098968
Merged-chr17-35259436-5	chr17	35259418	35259618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3576.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	4.01829147864267	4.37511164567927	4.38895248888735	4.15490062911361	3.95290549279787	3.98579409910471	3.68355754339441	3.80911584481756	-1.03288966357644	0.0205128216521434	0.130224949373699
Merged-chr9-70791642-3	chr9	70791541	70791741	+	942.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	112659.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	4.07062038116077	3.82367772601314	3.68132942204356	3.89246650290448	3.67124795258883	3.79879151400533	3.87498325124018	4.02643014137725	-0.0894933054787157	0.843990480397086	0.94088019607581
Merged-chr19-42001801-4	chr19	42001717	42001917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	20054.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	6.46365568408391	6.79219382432046	6.43023419903756	6.3376952536733	6.52930408989441	6.45884222209929	6.51381450079923	6.40800893027007	-0.0449767400841878	0.840580332079142	0.939316882381607
Merged-chr11-119954445-4	chr11	119954340	119954540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	11348.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	6.03675983827159	6.22901552468411	6.03782641461502	6.27599970428296	5.61578799085395	5.84940195478017	6.18419135882423	6.09573378129444	-0.33405376462738	0.197412140999706	0.498787070539606
Merged-chr2-101679380-4	chr2	101679316	101679516	+	981.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303273, intron 1 of 6)	intron (NM_001303273, intron 1 of 6)	996.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	4.91022451156687	5.26786446294131	4.6386213560625	4.43809470151016	5.11857444406927	5.01350486595975	5.04999019931695	4.45042040042225	0.181020549318344	0.648695406742294	0.852385954364293
Merged-chr15-77627008-2	chr15	77626908	77627108	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16278.0	NM_001143686	328563.0	Mm.17957	NM_001143686	ENSMUSG00000091694	Apol11b	A330102K04Rik	apolipoprotein L 11b	protein-coding	3.24314690318323	3.94144290740056	3.24353189473999	3.16408553178702	3.25558972600474	3.70550866170356	3.41232818581053	3.36607508450521	0.00876231891770002	0.988099233962005	0.995370064932717
Merged-chr6-115367006-4	chr6	115366908	115367108	+	899.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 1 of 7)	intron (NM_001308354, intron 1 of 7)	4659.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	4.44372461444085	4.09974504533123	4.17426578646771	4.3901255218304	4.47205092824584	4.44443276514021	4.42398964246457	4.52013916603952	0.406674128285483	0.283303442532105	0.595360804251864
Merged-chr2-80025195-4	chr2	80025097	80025297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	13705.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	8.20576901638407	8.22831906431699	7.72566591609477	7.93216079937269	8.39432102969309	8.33159033901879	7.63612655192134	7.97371113503482	0.107497404764975	0.62625718194651	0.840365733236005
Merged-chr11-83067770-1	chr11	83067670	83067870	+	842.6666869999999	f0_balb.idr	intron (NM_011408, intron 1 of 1)	MTC|LTR|ERVL-MaLR	2658.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	4.45844953157865	4.12328966180304	3.71360682770883	4.06970372552495	4.16822613290801	4.35446954596045	3.87437662099135	3.94147069148026	-0.0412313964280953	0.928605787489784	0.974080867539132
Merged-chr14-67932772-3	chr14	67932648	67932848	+	979.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177780, intron 1 of 51)	intron (NM_177780, intron 1 of 51)	824.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	3.83893250993691	3.55221397004317	3.83951205855279	4.04227165293397	3.30370260889026	3.63577308270643	3.82275223284572	3.63286711732527	-0.712249055492336	0.162363214343631	0.451545332256205
Merged-chr7-5125943-4	chr7	5125837	5126037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009028)	promoter-TSS (NM_009028)	13.0	NM_009028	19428.0	Mm.322186	NM_009028	ENSMUSG00000083649	Rasl2-9	M2|Ran|Ran/M2|Rasl2-9-ps	RAS-like, family 2, locus 9	protein-coding	5.71019166532411	5.90874580693867	5.65775627353722	5.81701198842947	6.05867617299064	5.88741673183135	5.89701877273909	6.00822575366538	0.299151720305258	0.22185783938907	0.529933989267153
Merged-chr2-14055794-3	chr2	14055692	14055892	+	979.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013935, exon 1 of 7)	exon (NM_013935, exon 1 of 7)	243.0	NM_001012396	30963.0	Mm.241205	NM_013935	ENSMUSG00000063275	Hacd1	Ptpla	3-hydroxyacyl-CoA dehydratase 1	protein-coding	4.47690470144352	4.13396992654688	4.6805279616333	3.83073219223037	3.77824550774907	3.94462487329766	4.12454013045924	4.35930001466632	-0.617356588388066	0.200887219348297	0.503059083379977
Merged-chr17-43327484-4	chr17	43327384	43327584	+	930.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32947.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	4.17349554807288	4.04382523476418	3.81070989804811	4.06174095779401	4.60125460798225	4.10257358997451	3.96267254070377	4.37966328120042	0.666527850924987	0.126167970754416	0.394701360955401
Merged-chr3-21986385-4	chr3	21986290	21986490	+	885.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90262.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.68280976778658	4.74855769799901	4.56786221775952	4.84015872190608	4.48089950831253	4.21110296778804	4.54686160536594	4.56492602365846	-0.580541268533226	0.110424829068379	0.366977724729579
Merged-chr4-145585279-3	chr4	145585210	145585410	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001324416, exon 1 of 4)	5' UTR (NM_001324416, exon 1 of 4)	110.0	NM_001324416	433801.0	Mm.276881	NM_001013808	ENSMUSG00000078502	Gm13212	-	predicted gene 13212	protein-coding	3.85395289731137	3.92730524915296	3.78528125425653	2.8077642086157	5.4400139408548	5.34105505760075	5.0587266018177	4.83984526190695	3.83141551732232	1.47735890279348e-12	1.53738200792305e-10
Merged-chr7-34407722-4	chr7	34407661	34407861	+	887.162476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18056.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	4.45849686044057	4.47225510170291	4.23901740337472	4.42101581955408	4.67973365455161	4.21147067719666	4.31261349714618	4.37288394626702	0.0412383785392483	0.915321589759704	0.968584873774714
Merged-chr4-6513105-4	chr4	6512983	6513183	+	872.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58812.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	4.22672167719781	4.05426991910683	4.03193333475109	4.49323068138529	3.88239480120603	4.10266297008362	4.37641097746843	4.64453340741305	0.126814454181013	0.780471180152206	0.914515492905769
Merged-chr7-34676285-3	chr7	34676194	34676394	+	791.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175140, intron 3 of 3)	intron (NM_175140, intron 3 of 3)	-20785.0	NM_001360818	233107.0	Mm.76761	NM_146188	ENSMUSG00000030499	Kctd15	BC031749	potassium channel tetramerisation domain containing 15	protein-coding	3.26595483901869	3.10624997955701	3.38235956799817	3.28172089662708	3.69753229750661	3.37871752450376	3.36922170943686	3.38052228653345	0.734397574459166	0.162960623170864	0.452549687022461
Merged-chr12-3843056-2	chr12	3842956	3843156	+	642.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 2 of 22)	PB1D11|SINE|Alu	19188.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	3.19194655533556	3.13199150287512	3.50330630659081	2.96541333822577	3.2236211325401	3.18024354477856	3.05910904589845	3.19068114655911	-0.139605346607574	0.808913715773871	0.926189832628403
Merged-chr15-88418132-1	chr15	88418032	88418232	+	869.0	f1_balb.idr	Intergenic	Intergenic	103258.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	2.32541929943812	2.39911307167898	2.32560241946725	2.50963399453551	2.59544605554139	2.63922538193273	2.64746813039815	2.65649964575046	1.23082940171757	0.0814885610134448	0.309694820031822
Merged-chr12-86242364-3	chr12	86242242	86242442	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027405, intron 1 of 9)	intron (NM_027405, intron 1 of 9)	484.0	NM_001324488	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	4.70940077438597	5.16430491029633	4.52546548944008	4.64770528478658	5.03179003873659	5.34837111228945	5.29115912331643	5.25965526498345	0.867308836473717	0.0107468883931992	0.0832375156626254
Merged-chr11-119034401-4	chr11	119034315	119034515	+	969.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	6498.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	5.2387045206688	5.9855524724031	4.89668981397381	4.92618891158034	5.26705135202473	4.8684555852549	4.91163164310977	4.89342208594233	-0.632626161169031	0.11174898517561	0.369429242293193
Merged-chr1-75219906-2	chr1	75219806	75220006	+	834.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009447)	promoter-TSS (NM_009447)	-612.0	NM_001313724	22145.0	Mm.1155	NM_009447	ENSMUSG00000026202	Tuba4a	M[a]4|Tuba4	tubulin, alpha 4A	protein-coding	3.1135544811751	2.61839329659135	2.61308910831522	2.79237816953077	2.86878631348838	2.93220400722449	3.04810925357054	2.94630580331207	0.660819385420699	0.304339418649448	0.616988329768724
Merged-chr19-17278579-4	chr19	17278497	17278697	+	996.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60908.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	5.24236231156121	4.97691896657894	4.97514334725468	5.11820354802931	5.47133783628803	5.32243850506189	5.18693398211864	5.26955164023261	0.445008596142569	0.13352717667479	0.406860242524004
Merged-chr8-25754418-4	chr8	25754305	25754505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028102)	promoter-TSS (NM_028102)	8.0	NM_001361595	72108.0	Mm.246875	NM_028102	ENSMUSG00000061313	Ddhd2	2010305K11Rik|SAMWD1|mKIAA0725	DDHD domain containing 2	protein-coding	7.7254710721677	7.27151631818527	7.21468169925441	7.24168732394801	7.17714848259851	7.4028022860259	7.13346728333869	6.89600441043228	-0.286743587086961	0.181573898461826	0.47824687501256
Merged-chr5-21136738-4	chr5	21136647	21136847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39532.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	6.03076032593701	5.72564983251406	6.1894215318081	6.10131894319785	5.68522479935226	6.34457247892515	6.04197245784738	5.63769896433271	-0.116121248181702	0.681307673904989	0.869300522010598
Merged-chr7-139224944-4	chr7	139224827	139225027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001143755, intron 6 of 8)	intron (NM_001143755, intron 6 of 8)	-11620.0	NM_001162540	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	5.96506476415236	6.08691477628169	5.7577906744668	6.08917396940568	6.88979991544983	6.58433758654363	6.25165792866423	6.59281172637367	0.921658930096491	0.000210116676872267	0.00379206261234561
Merged-chr11-80043064-4	chr11	80043028	80043228	+	772.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	37863.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	3.9100892492388	3.78869834637214	3.53751887900763	3.15658878448002	4.08503347287039	3.98665619386223	3.74766182419334	3.70842856630763	0.802052511055877	0.1275206635106	0.397369460390093
Merged-chr6-32158463-3	chr6	32158366	32158566	+	715.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 29 of 31)	intron (NM_175750, intron 29 of 31)	108178.0	NM_029587	76382.0	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	3.16628805677267	3.06473721344726	3.28218957651733	3.512977086494	3.16206815557127	3.07947959277707	3.09461381017209	3.43577385019772	-0.291297630928413	0.615862214145222	0.83467255086626
Merged-chr3-20132951-3	chr3	20132872	20133072	+	967.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355261, intron 5 of 7)	intron (NM_001355261, intron 5 of 7)	22144.0	NM_001355261	27357.0	Mm.6375	NM_013755	ENSMUSG00000019528	Gyg	AU017667|GN1|Gyg1	glycogenin	protein-coding	4.07686404067532	3.82331158914925	4.38358545075282	4.90536231568627	3.89071475564195	3.7321783189258	3.95847683512084	4.34122917660418	-0.937428807661148	0.0702339161723864	0.28377021736018
Merged-chr10-127576516-4	chr10	127576409	127576609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 24 of 89)	exon (NM_008512, exon 24 of 89)	-41950.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	5.96446661363846	6.34269410462113	5.74962091829173	5.77328724542364	5.98857881898064	6.07322101558503	5.89044530026734	5.9390314676153	-0.00174584046023292	0.994738240504434	0.998113036482228
Merged-chr1-156437980-3	chr1	156437882	156438082	+	916.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 10 of 15)	intron (NM_009230, intron 10 of 15)	-17067.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	4.68826116067134	4.69209336878	4.91929159944149	4.90964218299907	4.42956880150237	4.05016564387264	4.19571742694264	4.31102334909995	-1.2441301708691	0.00126771393159393	0.0162702145576856
Merged-chr16-55967044-4	chr16	55966944	55967144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024218, intron 2 of 5)	intron (NM_024218, intron 2 of 5)	769.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	5.36431178538489	5.74221819510815	5.24173127179616	4.44947004830875	5.690089491399	5.91615753135645	5.24723692954025	4.94945230952717	0.392070387462435	0.343290509622721	0.65198450249308
Merged-chr4-40853173-4	chr4	40853080	40853280	+	985.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	1357.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	4.84956338344648	5.35350235042034	4.60740887658986	4.656726474663	5.18199067111942	4.78631273595665	4.93243435544564	4.69050478671263	0.0412566891371393	0.913014687519776	0.96737778834115
Merged-chr2-129626071-4	chr2	129625973	129626173	+	949.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	30611.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	4.71878627428569	4.47659829197869	4.19063922151537	4.62191459228726	4.4782369366212	4.37325316589791	5.11784916270121	4.64204098752895	0.353218233131802	0.381616792569275	0.683847377414677
Merged-chr5-135914395-4	chr5	135914298	135914498	+	960.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018871, intron 1 of 1)	intron (NM_018871, intron 1 of 1)	20243.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	5.40742420727038	5.77387984118076	5.78998162674863	6.07030079955364	5.07938607693832	5.00516110640227	5.35146324513386	5.40457430064034	-1.01094946858392	0.000995589546867264	0.0133968619456009
Merged-chr15-38660247-4	chr15	38660130	38660330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-1674.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	6.68803943007739	6.06078904395026	6.82508228668951	6.97340986015957	6.38658621173213	6.18038853913753	6.6692362482185	6.28203214894776	-0.427779941013045	0.115802469374361	0.376560001979254
Merged-chr14-50836371-2	chr14	50836271	50836471	+	710.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_009351, exon 40 of 55)	exon (NM_009351, exon 40 of 55)	28455.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	2.21177675403445	2.29229433699219	2.2119683119816	1.98644863347926	2.39601985859888	2.73998500592312	2.49297979747796	2.79345016364354	2.80573721442943	0.000450647334002274	0.00709502910571729
Merged-chr4-101217339-4	chr4	101217208	101217408	+	818.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 1 of 24)	intron (NM_146145, intron 1 of 24)	47974.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	3.92952680008813	4.09977400948973	3.72743387597119	3.97517671615621	3.80282209721552	3.8461715500935	3.86596280875448	3.48607203555418	-0.529701034835557	0.25591148080561	0.567480136643187
Merged-chr18-75904458-3	chr18	75904341	75904541	+	766.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	84263.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	3.11278277287541	3.35676440389664	2.96086271216702	3.2124185520951	3.68888101207046	3.49296551910566	3.57932792743442	4.0165316592572	1.79423071582139	0.00147507257483529	0.0184122910511021
Merged-chr18-82783105-4	chr18	82782988	82783188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24049.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	5.54608627725432	6.08775362651797	5.63038744666984	5.38444698031334	5.9271560249774	5.77955120182488	5.8875254815949	5.65300523655626	0.228125401925646	0.42970272912475	0.7205774241418
Merged-chr14-120830479-4	chr14	120830355	120830555	+	721.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80739.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	3.5550842792496	3.53861359229058	3.39853024415185	3.2382074813663	3.77705807889287	3.04637841693167	3.32911319080394	3.1529174149734	-0.223793521876354	0.708559985187418	0.882912157723775
Merged-chr11-101657912-4	chr11	101657816	101658016	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7625.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	4.63130760594855	4.32263559955503	4.59527288249665	4.0601079313973	4.39982719171164	4.2275688388002	4.37335047767485	4.79802729231043	0.138636193472602	0.738399821142285	0.89672014039935
Merged-chr6-83838398-4	chr6	83838291	83838491	+	773.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-6650.0	NM_146169	232164.0	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	4.06425615103113	4.12097534589226	3.86870817409205	3.61133176989658	4.2243343856571	3.99061684883096	4.0910160827942	3.81257623264727	0.339647329161144	0.458230893510448	0.7411474452186
Merged-chr2-116978402-4	chr2	116978300	116978500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78248.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	5.73751449002674	5.34665759462474	6.13847795245673	5.92490975076126	5.7643941494042	5.44549670010874	5.97475436182516	5.65786043030438	-0.150659607562652	0.6142816990846	0.833790180380296
Merged-chr1-131470767-4	chr1	131470629	131470829	+	843.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	56632.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	3.85797566775447	4.46237526634396	3.42242441642163	3.79960589121075	4.0923141351412	4.13382761097113	3.99186126162635	3.90849602585608	0.243955070085401	0.637249418223172	0.846714859633278
Merged-chr13-85283994-4	chr13	85283910	85284110	+	980.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145452, intron 1 of 24)	(TG)n|Simple_repeat|Simple_repeat	5476.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	5.34299784974037	5.01651571824651	4.88011104229294	5.46992208615891	5.47158700166589	5.24063478333585	4.85730361485539	5.02723774822211	-0.0607615612631931	0.860608178038418	0.947291826627875
Merged-chr3-136852666-2	chr3	136852566	136852766	+	997.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 2 of 13)	MLT1B|LTR|ERVL-MaLR	182600.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	2.74510348342622	2.82079920018237	2.8969369082074	3.46111606077856	3.22141939831966	3.20921182659025	3.08596724294307	3.64093503531632	1.04707268257081	1	1
Merged-chr16-90199220-7	chr16	90199039	90199239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CACG)n|Simple_repeat|Simple_repeat	-21603.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	6.24981532483951	6.12037238668526	6.3406613975751	6.1941846345735	6.18441341608451	6.225201895176	6.10242246889693	6.06650536901649	-0.117326817806847	0.602469552818945	0.827700835747919
Merged-chr1-190911772-4	chr1	190911668	190911868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178775)	promoter-TSS (NM_178775)	2.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	6.54847881636384	6.6274681806969	6.4367240112773	6.5874370472843	6.2387568157533	6.15186405771032	5.91800660893168	6.36275674474331	-0.559210649797521	0.0134214231654478	0.0971844841804075
Merged-chr12-112976957-2	chr12	112976857	112977057	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001145900, exon 2 of 5)	exon (NM_001145900, exon 2 of 5)	394.0	NM_201646	399566.0	Mm.440140	NM_201646	ENSMUSG00000002803	Btbd6	-	BTB (POZ) domain containing 6	protein-coding	3.30185605788	3.28621896000394	3.83029154743512	3.19546840143172	3.00829693585825	3.2918608138598	3.28971091549872	3.41402556199104	-0.59618880879166	0.306086068343257	0.618593623499989
Merged-chr6-37143171-3	chr6	37143079	37143279	+	807.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 2 of 32)	intron (NM_001347104, intron 2 of 32)	156797.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	3.85772850374212	3.70873560884233	3.70366419282041	3.88216338451676	3.80708939917848	3.70591450024713	3.79313444793254	3.9936874930202	0.093271425719697	0.835702651590871	0.937516254002898
Merged-chr14-31158272-2	chr14	31158172	31158372	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 18 of 68)	RMER17C|LTR|ERVK	10369.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	3.17662916252145	3.3302478020602	3.61019715278886	3.12060290766065	3.26121224512671	3.28930120866866	3.4996482074609	3.297929093414	0.089061545540807	0.87076877466359	0.951430072143722
Merged-chr10-11323758-3	chr10	11323656	11323856	+	996.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19689.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	4.8434372681328	4.6255085579431	4.90890116748813	4.99044109272955	4.71282896554789	4.34270537463708	4.08548980326811	4.41110824253664	-0.941234365705259	0.0167176926492979	0.113274502149869
Merged-chr16-25009433-4	chr16	25009333	25009533	+	848.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-50206.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	3.83040386221917	3.92572125773946	4.08783259974762	4.25547941724425	4.39644193039386	3.89281577333119	4.11545601577688	4.13106566197346	0.27596549771605	0.533827404281669	0.789042708189764
Merged-chr8-105375239-3	chr8	105375142	105375342	+	885.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081333)	promoter-TSS (NM_001081333)	-139.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	3.82118976950744	3.36538074834765	3.54291026261649	3.33792917091701	3.94495388314458	4.04324234041455	3.70174906044353	4.24251789427329	1.41495990607719	0.00372830735658831	0.037905611960377
Merged-chr17-85023705-4	chr17	85023608	85023808	+	815.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159497, exon 6 of 6)	exon (NM_001159497, exon 6 of 6)	-4639.0	NM_009205	20532.0	Mm.227176	NM_009205	ENSMUSG00000024131	Slc3a1	D2H|NBAT|NTAA|RBAT	solute carrier family 3, member 1	protein-coding	4.01693731330707	3.99123593631456	3.9113957933601	3.96360355051248	4.16629747633432	4.53976768463665	3.94927921220249	4.44391887180906	0.81010436034247	0.0545186028241222	0.243770314116351
Merged-chr18-54961478-4	chr18	54961362	54961562	+	937.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	28718.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	4.8833942188925	5.12647351948196	4.68020239892786	5.33898363690345	4.73118382828492	5.16642839200217	5.12985767642402	5.08933335965422	-0.0383309782539685	0.913523107576314	0.967557224197028
Merged-chr15-38284069-4	chr15	38283965	38284165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15835.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	5.46215491550617	5.62835184750883	5.54492093142026	5.44277510799955	5.64929796038686	5.17361574951842	5.64165467542283	5.27808015875209	-0.0906601975045837	0.753695111328798	0.902808299713502
Merged-chr16-17001243-1	chr16	17001143	17001343	+	596.0	f0_balb.idr	intron (NM_001038663, intron 1 of 7)	ORR1B2|LTR|ERVL-MaLR	17861.0	NM_001038663	26413.0	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	3.28630888662839	3.01253057739767	3.33751059951884	3.14664645404321	2.8471899367631	3.17197042601213	2.78130223635148	3.11953763978084	-0.876128932876588	0.153258108099628	0.437821435078802
Merged-chr15-5116513-4	chr15	5116412	5116612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026069)	promoter-TSS (NM_026069)	-101.0	NM_026069	67281.0	Mm.10474	NM_026069	ENSMUSG00000041841	Rpl37	3110005M08Rik	ribosomal protein L37	protein-coding	8.83154553610542	9.01916481096035	8.98013605163262	8.99467963309276	8.96296153803311	8.88401135860461	9.14886937903625	8.76180644774695	-0.0147148313260068	0.923781338124156	0.971863340184091
Merged-chr4-75278316-4	chr4	75278204	75278404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025849)	promoter-TSS (NM_025849)	-12.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	8.23648621636534	8.44972731755922	8.10511819937541	8.6375944544622	8.61797105607299	8.75950541559024	8.16268267273775	8.48638081351985	0.182175077808083	0.356964649393107	0.663238634370609
Merged-chr12-16875903-4	chr12	16875796	16875996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19082.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	7.32445163724405	7.48034334161879	7.0122040881232	7.05622060647047	7.44153133411931	7.45037369575258	7.64333114502373	7.09629977094031	0.261759778829331	0.216365486144962	0.522911498699851
Merged-chr11-118247560-6	chr11	118247502	118247702	+	982.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	990.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	4.26249601465932	4.17298491142505	4.21567582281457	4.34165895958465	4.40574592200075	4.29289885011702	4.45640177444106	4.72321629928745	0.518809924254781	0.175165866807959	0.469892637126846
Merged-chr14-103059155-4	chr14	103059053	103059253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11063.0	NM_001033242	211286.0	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	8.30845612471708	8.82988396941449	8.77768599770042	8.63137217634806	8.43674056218179	8.49328673692773	8.52849235898726	8.15857637348216	-0.303220063838181	0.0928380341676175	0.333406580929205
Merged-chr11-97766571-4	chr11	97766465	97766665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026186)	promoter-TSS (NM_026186)	48.0	NM_026186	67480.0	Mm.33206	NM_026186	ENSMUSG00000018541	Cwc25	1300013D05Rik|AA473636|Ccdc49|R75228	CWC25 spliceosome-associated protein	protein-coding	6.24928657467519	6.57562094585482	6.02245765639913	6.1104777129688	6.34407859778785	6.19978939548484	5.94581086784022	6.43868272087243	-0.00881487639637155	0.972439269101845	0.990071088442147
Merged-chr19-44578243-1	chr19	44578143	44578343	+	722.0	f0_balb.idr	Intergenic	MIR|SINE|MIR	15389.0	NM_176958	319594.0	Mm.145278	NM_176958	ENSMUSG00000036450	Hif1an	2310046M24Rik|A830014H24Rik|FIH|FIH1	hypoxia-inducible factor 1, alpha subunit inhibitor	protein-coding	2.85707213335436	3.04378303813507	2.9738753868127	2.8897289929074	2.70082794747038	2.53138460127479	2.84723220219699	2.7936819769589	-1.03774057636096	0.114236793800236	0.373837784954674
Merged-chr3-31376625-2	chr3	31376525	31376725	+	689.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66306.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	3.08770741108368	2.98773336577071	3.20460595024549	3.3483946097163	2.87551020347192	3.25869666300985	3.01564841660839	3.20284682136402	-0.319556415898389	0.590373571057533	0.820919766532264
Merged-chr11-85249578-4	chr11	85249481	85249681	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	14415.0	NR_028329	654810.0	Mm.209580	NR_028329	ENSMUSG00000085628	Appbp2os	D630032N06Rik	amyloid beta precursor protein (cytoplasmic tail) binding protein 2, opposite strand	ncRNA	5.79876265791437	5.73587480678616	5.9466578603081	5.25986632777362	5.24803815569307	5.58828321358407	5.55309451119858	5.34572280818844	-0.442987689471587	0.150183476260436	0.432789864645408
Merged-chr1-63668984-4	chr1	63668900	63669100	+	833.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081658, intron 6 of 14)	MTD|LTR|ERVL-MaLR	17927.0	NM_001081658	241073.0	Mm.297680	NM_001081658	ENSMUSG00000069085	Dytn	Gm215	dystrotelin	protein-coding	4.23575331588703	3.85772769702616	3.95706528061673	4.32019379639618	4.03782166792679	4.07859609283622	4.29690283837585	4.05458542204709	-0.00120078745595887	0.997782890937136	0.999049532170228
Merged-chr10-70250947-4	chr10	70250845	70251045	+	810.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025807, intron 1 of 5)	intron (NM_025807, intron 1 of 5)	5669.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	4.19054677066947	3.9810175444721	4.54360273709538	4.45076679127243	4.2252641176829	4.31932361414593	4.82507147420297	4.68574064878673	0.501655415484251	0.235523989169053	0.545501823020436
Merged-chr16-4726391-4	chr16	4726286	4726486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136066)	promoter-TSS (NM_001136066)	25.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	6.76848885095938	6.50228417456198	6.39035769851765	6.6445374560893	6.45060158515415	6.58504968247865	6.54485832183377	6.80492799889764	0.0148708724552181	0.945790998866483	0.980637693555381
Merged-chr2-180695401-4	chr2	180695250	180695450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291432, intron 1 of 5)	Charlie1|DNA|hAT-Charlie	-3302.0	NR_111965	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	6.40411517059425	6.51616466574623	6.547909686102	6.92791481587208	5.77649100399976	5.67163915350199	5.93761612373917	5.96393257372447	-1.2062481568445	1.50245813655299e-06	5.07081402094383e-05
Merged-chr8-26896079-3	chr8	26895981	26896181	+	964.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-71658.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	4.71551972742385	4.44013462174368	4.27694273847086	4.36973626821782	3.9753172914557	3.79857982031643	4.21348630415165	4.08597573649088	-1.0838339030038	0.010601376640704	0.0823524378378992
Merged-chr6-25894628-1	chr6	25894528	25894728	+	543.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-36798.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	2.78037008187818	2.64052376217535	2.71543140849523	2.9446433882399	2.79418911362289	2.88626163547334	2.89109015301346	2.84140450402729	0.300534522096455	0.633437949559371	0.844651176689519
Merged-chr8-71596095-4	chr8	71595984	71596184	+	947.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025396, exon 5 of 5)	exon (NM_025396, exon 5 of 5)	-1562.0	NM_001166213	100037278.0	Mm.482159	NM_001166213	ENSMUSG00000043243	Fam129c	Bcnp1	family with sequence similarity 129, member C	protein-coding	5.69026821808645	5.73250301033378	4.85850456131096	5.56814547949751	5.61240104797462	5.31939419845125	5.6386621820478	5.33734657514948	-0.0358083290384625	0.912444577629033	0.967207481621882
Merged-chr8-34849048-3	chr8	34848949	34849149	+	744.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 18 of 26)	intron (NM_175091, intron 18 of 26)	41439.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	3.36619913718873	3.14098797109661	3.26387345809838	3.67864328270082	3.02591003100267	2.76938651422971	2.88639098792151	2.89332914483959	-2.05431632755204	0.00212819336816068	0.0245355807826869
Merged-chr2-124927575-4	chr2	124927475	124927675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140552.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	5.89145356259291	5.83129401507254	6.08325991033787	5.98902516770521	5.73452470744554	5.47305753033595	6.12790130651608	6.01853136431943	-0.145246857534539	0.587974080214355	0.819445784289058
Merged-chr16-31209980-4	chr16	31209831	31210031	+	886.622192	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8693.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	4.20255581183121	4.14816694058446	4.37139114473583	4.12674268698443	4.36908763604671	4.18467623681614	4.04390946733328	4.05836822170565	-0.0703345285071709	0.86261701808991	0.948225401948674
Merged-chr14-50956188-3	chr14	50956077	50956277	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001123371)	promoter-TSS (NM_001123371)	36.0	NM_001123371	667034.0	Mm.482171	NM_001123371	ENSMUSG00000068417	Pnp2	-	purine-nucleoside phosphorylase 2	protein-coding	3.11755737734606	2.9380988840051	3.03137047438129	2.34645324710052	4.2618407632268	4.95278536185232	4.18890905955514	4.03885459579337	7.68386667658825	9.95701885527962e-17	2.1219480392214e-14
Merged-chr6-86524173-4	chr6	86524106	86524306	+	878.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011865)	TTS (NM_011865)	1983.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	3.66420925288593	4.01724530036261	4.34793018868662	3.98683387724811	3.90231174644645	3.84297607768092	3.76484340590778	3.83139065717304	-0.515997580856669	0.264864911578065	0.576697547986146
Merged-chr8-122315687-4	chr8	122315593	122315793	+	801.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009569, intron 3 of 9)	intron (NM_009569, intron 3 of 9)	33552.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	4.09683927279088	3.9316994144966	4.14173238869282	4.38652004932844	3.93920623114233	3.66210369902071	4.07944291525326	3.95229428089815	-0.651413842018726	0.147107013401213	0.42788514025699
Merged-chr17-87247070-4	chr17	87246975	87247175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18872.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	8.60406779148753	8.70544649703261	8.61456579519763	8.40032560972252	8.67803417662566	8.70275982989795	8.71258837785375	8.47466244782504	0.0818951331062357	0.601769462188559	0.827233985768737
Merged-chr11-103364380-4	chr11	103364274	103364474	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183288)	promoter-TSS (NM_183288)	-682.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	4.35636751522474	4.4815389550706	4.04490545076556	4.02611822989447	4.07106007175697	4.11709472463548	4.12415784810105	4.0919940747522	-0.343117120021941	0.413800070769221	0.708758457956118
Merged-chr4-58723051-3	chr4	58722978	58723178	+	827.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62642.0	NM_146920	258922.0	Mm.223327	NM_146920	ENSMUSG00000043385	Olfr267	MOR262-1	olfactory receptor 267	protein-coding	3.73103095687325	3.6698969815801	3.63070699575219	3.8592540610942	3.76438222997693	3.38208677621706	3.3903156241265	3.57519102113992	-0.578609805983847	0.250830595267544	0.56211309615478
Merged-chr12-11214892-3	chr12	11214792	11214992	+	977.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5944.0	NM_019544	56184.0	Mm.117113	NM_019544	ENSMUSG00000047002	Msgn1	Msgn|pMsgn1	mesogenin 1	protein-coding	4.3068857046025	4.52684996671466	4.98845106766114	5.36968789796865	3.54270421681639	3.60273380813408	3.68251288721962	3.62371915009545	-3.58014194538254	2.47957835641515e-10	1.7899990652259e-08
Merged-chr5-36563302-4	chr5	36563193	36563393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	19104.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	7.08131720060868	7.08156832654259	6.804479414678	6.94384574052694	7.00235630477538	7.210878441928	7.3501046565323	7.10108930072332	0.254959003531395	0.193489849451693	0.493705692361702
Merged-chr16-44058914-4	chr16	44058802	44059002	+	837.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16894.0	NM_001359085	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	3.93269029437159	3.82276693096192	4.07134590409852	4.17485773087806	3.79458190304523	4.05492381133125	3.70853322073979	3.7764082547181	-0.505827271226847	0.26169895677182	0.573611813883764
Merged-chr1-138976142-4	chr1	138976032	138976232	+	874.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	-1525.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	4.4271703535266	4.32437216684374	4.77850706413883	5.08468587578631	4.80157817636086	4.36360229056476	4.31632267911616	4.37956054685848	-0.465646913414331	0.27256056867833	0.58398569332515
Merged-chr4-151057554-4	chr4	151057460	151057660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009498, intron 1 of 4)	CpG	393.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	5.97164971405592	5.99398745370111	6.12277007106617	5.99999899936626	6.11116314994626	5.98055704129455	6.39352049976017	6.23407308807148	0.258783470760988	0.272067553728631	0.583666536728028
Merged-chr10-128090760-4	chr10	128090655	128090855	+	988.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_016774)	TTS (NM_016774)	-2028.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	5.31980505000045	5.28146483705144	4.82599510271971	4.60468539252478	5.39084333359391	5.11745285204628	4.91773656021218	5.00963881778807	0.187895991146362	0.603580737402824	0.828209017602645
Merged-chr15-77626655-4	chr15	77626564	77626764	+	983.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16622.0	NM_001143686	328563.0	Mm.17957	NM_001143686	ENSMUSG00000091694	Apol11b	A330102K04Rik	apolipoprotein L 11b	protein-coding	5.03272631212593	5.75623256855865	4.38475881372955	4.91745030676647	5.35640304919916	4.94936058324201	4.7878071074892	5.06378185602889	-0.110276073009248	0.796325223504134	0.921103730429807
Merged-chr4-154981923-3	chr4	154981824	154982024	+	897.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001305804)	TTS (NM_001305804)	17801.0	NR_131230	269614.0	Mm.30042	NM_172990	ENSMUSG00000029056	Pank4	D030031I12Rik|R75150	pantothenate kinase 4	protein-coding	3.92186296403997	3.8578375293997	3.50008598564013	3.50850234269365	4.51287864550984	4.14827461949855	4.05105198041369	4.31789465348466	1.55838278684695	0.000562317356652037	0.00848343828563334
Merged-chr11-54727566-4	chr11	54727473	54727673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 3 of 5)	intron (NM_178626, intron 3 of 5)	60130.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	5.7220702060025	5.53633205888591	5.1481092313303	5.14709963347575	5.77229902441652	5.61442096775243	5.71655720433231	5.24896724071655	0.35982038482369	0.246345836173127	0.55762669839908
Merged-chr19-60543484-2	chr19	60543384	60543584	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172097, intron 4 of 6)	B2_Mm2|SINE|B2	37539.0	NM_001172097	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	2.68502938922625	2.47187519665204	2.52502865999683	2.51498498993415	3.18564163224599	3.07580146050632	3.00842505988846	3.54784136227048	3.11403556115706	1.08544484241396e-05	0.000296359334246964
Merged-chr7-110999640-4	chr7	110999557	110999757	+	945.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17196.0	NM_194464	17540.0	Mm.250023	NM_010826	ENSMUSG00000005611	Mrvi1	BB115629|Irag|Ris1	MRV integration site 1	protein-coding	4.49785417048798	4.79703521173882	4.41680825022795	4.27082459584128	4.14405637044013	4.5035821474763	4.437701842635	4.0792230025068	-0.485575227132634	0.234699728804124	0.54456733046089
Merged-chr17-34124376-3	chr17	34124285	34124485	+	920.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010386, intron 1 of 5)	(T)n|Simple_repeat|Simple_repeat	-1133.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	3.8255102070182	3.99785801728342	3.75883106139489	3.3691848292213	4.98066126687605	5.13430805894899	4.72592131346211	4.64351101977073	2.84394410144186	2.11833671456896e-11	1.80792672669429e-09
Merged-chr2-167375331-4	chr2	167375235	167375435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26157.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	8.52404584441345	8.82911020166069	8.5448133871163	8.52580429892529	8.53358771282074	8.8333139566834	8.45650570845327	8.66295351938488	0.0185467826287235	0.911510292317865	0.96695373445261
Merged-chr19-5636732-4	chr19	5636635	5636835	+	927.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009045)	promoter-TSS (NM_009045)	-755.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	4.48611434921558	4.92709790846366	4.88064973028959	3.60140202960797	4.57063746269592	4.81766460832705	4.18946865923713	4.04094351132323	-0.305865243157304	0.559200668777798	0.803643367386073
Merged-chr18-32473204-3	chr18	32473082	32473282	+	864.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	86852.0	NM_001048207	71683.0	Mm.292145	NM_027863	ENSMUSG00000090523	Gypc	0610037F22Rik|Cd236r	glycophorin C	protein-coding	2.93084273716659	3.39544649627687	2.99654045446541	3.1600308849756	2.9250465107889	3.10520582802965	3.04804285295834	3.11665355472909	-0.364442121937084	0.538465933810909	0.791615484759999
Merged-chr4-150626563-4	chr4	150626482	150626682	+	850.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25592.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	4.10221163350484	4.28154158765567	4.00111900104146	4.07495664650987	4.10318419633898	4.68357558098757	3.98473498934622	4.19455612565727	0.360808063287111	0.401594817285827	0.699159043648963
Merged-chr6-108576902-1	chr6	108576802	108577002	+	787.333313	f0_balb.idr	TTS (NR_104577)	TTS (NR_104577)	46265.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	3.57590330578034	3.33280037412935	3.6216147554327	3.9408503024047	2.676281586374	2.80906972652686	2.7745337509941	2.86027734766744	-5.12523633895258	7.96880529287712e-07	2.8403645543837e-05
Merged-chr1-171660603-4	chr1	171660506	171660706	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER77B|LTR|ERVL	-7569.0	NM_144539	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	5.05877006701431	5.37737399311646	4.9868605244183	5.33757155434051	5.3868866242069	5.08817635019323	5.16835753898931	5.36795381738447	0.0923069497017359	0.763831880413389	0.90743201895927
Merged-chr5-36497269-3	chr5	36497150	36497350	+	859.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 12 of 13)	intron (NM_133910, intron 12 of 13)	12662.0	NM_025725	66717.0	Mm.42368	NM_025725	ENSMUSG00000050677	Ccdc96	4921513E08Rik	coiled-coil domain containing 96	protein-coding	3.00382269336027	2.84891473090055	2.94471672436077	3.21785907156648	2.74391415693854	2.77991526467828	2.80833473826697	3.16566135841713	-0.585117845851742	0.362328575911492	0.667521051512637
Merged-chr4-45795292-4	chr4	45795188	45795388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3734.0	NM_028270	72535.0	Mm.331583	NM_028270	ENSMUSG00000035561	Aldh1b1	2700007F14Rik	aldehyde dehydrogenase 1 family, member B1	protein-coding	5.73315872166108	5.66537922438889	5.78451947502509	5.88715979371682	6.15208107085113	5.56279447706805	6.0392890423208	6.06605371903152	0.331184407876704	0.209159017075908	0.513577117801228
Merged-chr14-31422613-4	chr14	31422509	31422709	+	895.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	-4932.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	4.880981593718	4.69226725914611	4.84836103046965	4.72013832631597	4.69253069620889	4.43755406228519	4.38803991840328	4.81075746082977	-0.388683447380388	0.274422462504482	0.586182213515363
Merged-chr6-58937491-4	chr6	58937383	58937583	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153574, intron 17 of 17)	RLTR40|LTR|ERVK	-30357.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	4.85596372815593	5.16363284395981	5.30526437964176	5.77614515736885	4.86997943342008	5.07657837549919	5.24953626935218	5.30155606169792	-0.387807717654902	0.278810065265805	0.591009603347969
Merged-chr4-59214910-4	chr4	59214804	59215004	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011673, intron 5 of 8)	intron (NM_011673, intron 5 of 8)	25354.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	5.30341087109738	5.11849719398093	5.36482448768779	5.64223699159598	5.73019905165893	5.31659049682924	5.39548190762645	5.23720533240055	0.103661829151095	0.740062218415507	0.897683586969888
Merged-chr2-145861763-3	chr2	145861654	145861854	+	912.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 9 of 12)	intron (NM_028724, intron 9 of 12)	-41487.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	3.72358719727424	3.96598645312716	4.18616112069587	4.25959359367771	3.38040727899782	3.78691179920685	3.86447458194151	3.54428475832571	-1.20161710599984	0.0166917944452504	0.113152879696998
Merged-chr10-42273877-4	chr10	42273735	42273935	+	993.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	2907.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	4.69418057403579	4.54878217033692	4.18726831867956	4.70438710582975	4.36106884229297	4.36551448672221	4.44585109311666	4.50437291810346	-0.324247533237401	0.395273427352272	0.694164153006522
Merged-chr8-73353630-4	chr8	73353536	73353736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010687)	promoter-TSS (NM_010687)	-96.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	8.75450432800667	8.72546052601885	8.94669268003645	8.83838946139994	8.86072592603698	8.88653543047399	9.13949619684554	8.66322358669117	0.0992160635126712	0.541349558398164	0.793213393248444
Merged-chr14-25394782-4	chr14	25394680	25394880	+	932.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64405.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	4.49228575227091	4.90867896545524	4.72158405901365	4.22139257982546	4.55288006275642	4.62376625926886	4.29675179804983	4.3588992933186	-0.30713865744428	0.4478959880495	0.73332468018769
Merged-chr16-91405786-4	chr16	91405684	91405884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008349)	promoter-TSS (NM_008349)	-451.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	6.81445920684527	7.19217170935919	6.19708076108149	6.36402411892762	7.38409289482813	7.18604912934909	6.8084298562118	6.61457281235392	0.472476796186664	0.106102222621328	0.358934781509505
Merged-chr7-25220000-4	chr7	25219901	25220101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207677)	promoter-TSS (NM_207677)	-142.0	NM_207677	67379.0	Mm.280594	NM_026117	ENSMUSG00000054499	Dedd2	2410050E11Rik|FLAME-3	death effector domain-containing DNA binding protein 2	protein-coding	7.87884222835801	7.99003657961286	6.92303738939446	7.4028378563976	8.02634761816873	7.86783343816168	7.52355344271879	7.69321581424294	0.235009210319049	0.356546830834719	0.662939419883613
Merged-chr14-122603350-3	chr14	122603251	122603451	+	830.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 6 of 24)	intron (NR_153443, intron 6 of 24)	69023.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	3.81349370601829	4.01169412775531	4.01498982299648	4.12252751775985	3.82657092734141	3.5613139531042	4.38180074777567	4.01257425097816	-0.050884928454824	0.916288235730371	0.96894237689311
Merged-chr8-106153148-4	chr8	106153048	106153248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 1 of 5)	intron (NM_001357319, intron 1 of 5)	2794.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	7.57380225936934	7.71427301731087	7.19529682521853	7.44807822439451	7.64077776020362	7.26365442416348	7.56332891195861	7.1182322611861	-0.10127923970729	0.632018649156323	0.84364113460172
Merged-chr4-43474208-5	chr4	43474099	43474299	+	863.863342	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9510.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	4.0380160372881	4.17667515191082	4.23346374783101	4.14600070922696	4.23049250292514	4.57140685431793	4.45805126307411	4.036281411304	0.453591819391595	0.261494405823731	0.57342833457985
Merged-chr5-76529277-4	chr5	76529183	76529383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027270)	promoter-TSS (NM_027270)	-24.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	7.97278952402742	7.77624807973265	7.96721211931647	7.86784172846681	7.84390848759993	8.09534315493567	8.17263613938536	8.08052004371462	0.197773258079227	0.238011753836682	0.548302111021463
Merged-chr4-57930771-4	chr4	57930664	57930864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-14500.0	NM_178727	242484.0	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	6.60061975382702	6.14653809282724	6.64769631531893	7.10020006630199	6.8630089309613	6.35927083698169	6.19104439699942	6.58139192706526	-0.214850969233053	0.450952385218925	0.735677381391623
Merged-chr2-102531206-3	chr2	102531123	102531323	+	734.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	-18798.0	NM_173749	210622.0	Mm.28649	NM_173749	ENSMUSG00000027188	Pamr1	5930437L24|E430002G05Rik|Ramp	peptidase domain containing associated with muscle regeneration 1	protein-coding	3.12512454721308	2.8816402355937	3.04582787835681	2.64032514948791	4.20162737371326	3.77296974354279	3.67976457207075	4.48777322363722	4.39473305850468	3.41975168971113e-12	3.35611434007683e-10
Merged-chr5-101864159-4	chr5	101864062	101864262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 50 of 66)	intron (NM_172882, intron 50 of 66)	99032.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	5.32693075059559	5.34243692253572	5.16262998698344	5.61004024720211	5.37028011161844	5.47253930676587	5.88200603582797	5.35476275946411	0.255195265348579	0.404204635590899	0.701366930244469
Merged-chr12-73584750-4	chr12	73584655	73584855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313977)	promoter-TSS (NM_001313977)	-41.0	NM_001313977	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	6.46732227114074	6.3273400961385	6.41697602148733	6.56604224348721	6.45776293537401	6.46459970372417	6.57749178384428	6.34043556593552	0.0103073135813661	0.961675590801176	0.986270342885669
Merged-chr12-8635785-4	chr12	8635706	8635906	+	866.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36740.0	NM_177802	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	3.63212978276701	3.7768861195729	3.68833482775784	3.91942757405424	3.95812888758678	3.62861440646522	3.82627055029293	3.84015983992976	0.156260250027184	0.735920087771866	0.895751244963882
Merged-chr12-102333313-4	chr12	102333194	102333394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 3 of 9)	intron (NM_177620, intron 3 of 9)	49653.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	5.57166102485454	5.45243501333988	5.69830361327819	5.91689636041147	5.45099760934084	4.98806753303882	5.64532634921461	5.5948354032247	-0.404101543308742	0.184837278287969	0.482542916972652
Merged-chr18-9552699-5	chr18	9552535	9552735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	66834.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	5.65645009861526	5.29106195889185	6.18958997849729	5.04770815065252	5.75953636126239	5.69982485922599	5.55024622743846	5.72762624524547	0.134933325038952	0.694485439529436	0.87596715638729
Merged-chr16-10436457-4	chr16	10436363	10436563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013778, intron 1 of 6)	intron (NM_001013778, intron 1 of 6)	10899.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	6.79826476680948	7.27684183782295	6.97054780580008	7.04031908814147	6.71176270259687	6.67653064969886	6.70739433934916	6.32152533972227	-0.591210022502705	0.00691216231068211	0.0603385824272801
Merged-chr1-85895698-4	chr1	85895610	85895810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	1200.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	8.54930509095249	8.62520456245548	8.68083089889392	8.51018946495618	8.56820096730972	8.57236829686033	8.34486256984908	8.37299011583236	-0.150479097467005	0.325376097618164	0.636913344396943
Merged-chr8-109622598-2	chr8	109622498	109622698	+	844.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039700, intron 4 of 33)	intron (NM_001039700, intron 4 of 33)	8081.0	NM_181544	244646.0	Mm.436810	NM_181544	ENSMUSG00000048827	Pkd1l3	-	polycystic kidney disease 1 like 3	protein-coding	3.26116604480326	3.14041896424536	3.3130143362038	3.07767863550171	3.12436683343846	2.93162793489494	3.08131089799449	3.09063077862935	-0.532585135829492	0.351676640955447	0.658927363883434
Merged-chr2-29055247-4	chr2	29055135	29055335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166705)	promoter-TSS (NM_001166705)	-169.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	5.74559331885641	5.47556935527572	5.3200213333171	5.48234571374293	5.58552127542734	5.43236132816535	5.19586271658677	5.69651063169406	-0.0284981071773693	0.921489168416701	0.970886721487516
Merged-chr11-115512898-4	chr11	115512793	115512993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008258, intron 1 of 4)	intron (NM_008258, intron 1 of 4)	1500.0	NM_008258	15374.0	Mm.1775	NM_008258	ENSMUSG00000020737	Jpt1	Hn1	Jupiter microtubule associated homolog 1	protein-coding	6.5904890399691	6.84928665989655	6.38178719361947	6.90411060836779	6.91266726434111	6.48190171836163	6.77805048033678	6.52083721643971	-0.0238850734506554	0.919112355799957	0.970285021467879
Merged-chr4-95830543-4	chr4	95830425	95830625	+	907.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 11 of 15)	intron (NM_001113412, intron 11 of 15)	136510.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	3.66995861966177	4.00871722699721	3.79066205404453	3.87156178086099	4.23476590688605	4.02377078627175	4.16615059893082	4.41412330971212	0.980056437820751	0.022247728745859	0.137522456309292
Merged-chr15-25532268-3	chr15	25532170	25532370	+	945.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-90280.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	3.92481072623396	4.03119643225103	4.16464457946829	4.51840820637411	3.93268150880825	3.75173323077723	3.85653224689748	4.28638996264995	-0.583060611022206	0.213145998044891	0.518382346333146
Merged-chr6-33256849-3	chr6	33256751	33256951	+	757.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347089, intron 1 of 9)	intron (NM_001347089, intron 1 of 9)	7723.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	3.45447132744772	3.1775790243601	3.60533782075956	3.54538044465703	3.16793782292988	3.26828831745612	3.44100021223429	3.398733083927	-0.48930924997893	0.364177155706437	0.66908692803749
Merged-chr2-30782587-4	chr2	30782500	30782700	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19137.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	5.22617337287901	5.35026722471525	5.0299873028635	5.07934860458481	4.93216539932825	5.05778210279005	5.39635012425466	5.22345084591907	-0.030074563887823	0.923447922683677	0.971691916456523
Merged-chr2-66101186-4	chr2	66101078	66101278	+	884.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015736, intron 3 of 10)	intron (NM_015736, intron 3 of 10)	23615.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	4.45521833156155	3.93693738458601	4.24077463567717	4.81016119478563	4.10672355512381	4.10778825589564	4.39528107032113	4.52971004034102	-0.28485251316212	0.530463587459213	0.786540312295789
Merged-chr7-144941665-4	chr7	144941562	144941762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1737.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	6.34530197225277	6.73674617641782	6.18364361482981	6.36235529210962	6.72222100201021	6.73329597540016	6.84769134629376	6.63068633083517	0.448477531613735	0.0451418075610529	0.2172808169048
Merged-chr8-129234309-4	chr8	129234249	129234449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153780)	promoter-TSS (NM_153780)	-303.0	NM_153780	72139.0	Mm.426514	NM_153780	ENSMUSG00000071302	2610044O15Rik8	2610044O15Rik	RIKEN cDNA 2610044O15 gene	protein-coding	6.43202792039568	6.5754683780547	6.53826910187579	6.27557929053167	6.52706250452401	6.74855464029848	7.125120807853	7.10402674600646	0.632945800858141	0.0071867920645267	0.0621113006751999
Merged-chr11-120894180-3	chr11	120894080	120894280	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 10 of 18)	RSINE1|SINE|B4	38692.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	5.22058740606959	5.01767732933695	5.0289084041171	5.18631728188406	4.29553695767375	4.05337069483551	4.15518652373373	4.27963930090237	-2.04355673026113	8.47438842057394e-08	3.68028366923754e-06
Merged-chr6-17726269-2	chr6	17726158	17726358	+	670.5	f0_balb.idr|f1_balb.idr	intron (NM_001289624, intron 1 of 15)	intron (NM_001289624, intron 1 of 15)	-17334.0	NM_001289627	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	3.42671641209548	3.54832197030155	3.37366953381597	3.53528630835524	3.21576712338826	3.17499129928337	3.12551583343006	3.37186144878672	-0.93884529863293	0.0808306768482134	0.308429653016992
Merged-chr15-73472925-2	chr15	73472825	73473025	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39635.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	2.78058850055046	3.00650897730524	3.05499774755434	2.84390905563877	3.18214455524527	3.34294215654486	3.31823183058293	3.11395218649447	1.28669499145409	0.0243333397698258	0.145780893146741
Merged-chr6-124808850-4	chr6	124808768	124808968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306052)	promoter-TSS (NM_001306052)	-17.0	NM_001306052	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	5.89661597270932	6.04859034579523	5.89765431549091	5.66172556715046	6.08642006931246	6.40322718846346	6.23307110442751	5.98483337590662	0.487677077881265	0.0516298402750467	0.236195153990459
Merged-chr1-165771774-4	chr1	165771669	165771869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 4 of 4)	MIR|SINE|MIR	8011.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	7.76261920506194	8.04862389215159	8.06922246470828	7.98895858034016	7.87415411135732	7.67382992946371	8.09797655573829	7.68413149985915	-0.165314226517206	0.362590493361976	0.667740258389487
Merged-chr6-54681643-4	chr6	54681562	54681762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289740)	promoter-TSS (NM_001289740)	38.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	7.7382613742909	7.78053080079418	7.5529580659678	7.90213215820153	7.63110541526051	7.53303981346662	7.93086663910975	7.27281936617971	-0.184023586907341	0.359733102098328	0.665443059431823
Merged-chr11-85311211-4	chr11	85311121	85311321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016910)	promoter-TSS (NM_016910)	-33.0	NM_016910	53892.0	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding	7.75562265680201	7.84529638339107	7.38061851571643	7.30349731715402	7.83623018265341	7.78661468073568	7.50047282645273	7.7360862450938	0.180598419624038	0.374984331903252	0.67807324835604
Merged-chr2-33909197-3	chr2	33909096	33909296	+	902.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-21250.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	3.48213229396699	3.46105730035148	3.69268169634755	3.6631080611549	3.62935370448456	3.47560114919878	3.52488299267034	3.641343441297	-0.0361076773165266	0.940703269028603	0.978654793543509
Merged-chr3-121544941-3	chr3	121544873	121545073	+	772.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12629.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	3.03738049334634	2.95516212823867	3.16315380396528	3.47946626752241	3.09347394002227	3.33250195396641	3.26547619498486	3.43008713187927	0.346012849175707	0.564241187192601	0.80661411626965
Merged-chr7-35546063-1	chr7	35545963	35546163	+	576.0	f0_balb.idr	Intergenic	MER20|DNA|hAT-Charlie	-8319.0	NM_028034	71981.0	Mm.47904	NM_028034	ENSMUSG00000030491	Tdrd12	2410004F06Rik|2410070K17Rik|ECAT8|EG434165|G1-476-14|repro23	tudor domain containing 12	protein-coding	3.31495874186002	3.48891482408871	3.43119954147763	3.2731132133726	3.44986393018306	3.48837606946304	3.57213543698888	3.37281205850538	0.339398629540798	0.499201727098659	0.768207716806231
Merged-chr5-113724660-3	chr5	113724563	113724763	+	853.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033216, exon 1 of 3)	non-coding (NR_033216, exon 1 of 3)	109.0	NR_033216	381707.0	Mm.159016	NR_033216	ENSMUSG00000042184	1700069L16Rik	1700096P12Rik	RIKEN cDNA 1700069L16 gene	ncRNA	3.50786106757661	3.53118296172202	3.56484516181842	3.58791017411073	3.65477344619076	3.83976458792165	3.79827230377978	3.38582618136015	0.403226163555406	0.405808336550076	0.702456276834042
Merged-chr17-69265471-4	chr17	69265369	69265569	+	948.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 12 of 21)	intron (NM_001355736, intron 12 of 21)	11737.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	5.00888064879236	4.57993187805302	4.68306845943871	4.76164281614661	4.615978676195	4.31135580897014	4.76877171813712	4.43120364501755	-0.474582789113403	0.198695281247687	0.500315955282619
Merged-chr7-119880543-4	chr7	119880439	119880639	+	981.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	14919.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	4.88259691199186	4.89049281998603	4.9205617453535	5.09864794623993	5.0400716589789	5.2947630305451	4.82240471161171	5.1806839912911	0.247714648084125	0.440749662038791	0.728120488809168
Merged-chr11-71855353-4	chr11	71855272	71855472	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84750.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	4.96746229048779	4.90122140499981	5.16630119453304	5.37799050589113	5.35695796867399	4.41428526468983	4.90850544771133	5.22230791830344	-0.173043358542087	0.649819805019303	0.852959309296806
Merged-chr5-62766356-4	chr5	62766274	62766474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178407)	promoter-TSS (NM_178407)	-197.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	6.17341471134452	5.81107802625136	6.04365140067534	6.09768133780425	5.58505208079829	5.53321003571899	5.62510284391921	5.47755007889431	-0.789389563997908	0.00214002658715348	0.0246560298554544
Merged-chr2-91537763-4	chr2	91537658	91537858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165989, intron 1 of 43)	intron (NM_001165989, intron 1 of 43)	-8564.0	NM_029437	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	6.14036783696397	5.9249689810496	6.25705714784334	6.174996451744	6.06062095074465	6.12233757768316	6.2961830221897	6.2340510288155	0.0715748842671599	0.75889441650221	0.905374280076611
Merged-chr12-87200321-4	chr12	87200222	87200422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290288)	promoter-TSS (NM_001290288)	-93.0	NM_001033475	382620.0	Mm.374912	NM_001033475	ENSMUSG00000034111	Tmed8	6430595O10Rik|AI447224|Gm1184|Mem1	transmembrane p24 trafficking protein 8	protein-coding	5.74762765322169	5.41150344355892	5.52622646338184	5.15637900997389	5.44726145867511	5.40061788138206	5.55095337792072	5.72171090711263	0.132141142389229	0.655598324120539	0.856188340322108
Merged-chr14-101586214-2	chr14	101586114	101586314	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	22977.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	3.09451361799997	2.9873456762693	3.26012836808526	2.86087169037412	3.16205317270835	3.20622588644394	2.8280384256699	3.03324928793749	0.0689664102827896	0.908619254090614	0.966100563913989
Merged-chr17-70987001-4	chr17	70986894	70987094	+	687.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	3522.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	4.00864297334957	3.63355063308129	3.77742856115575	3.58110174473029	3.87727258330461	3.67308646667863	3.71053791463887	3.82504976272128	0.0897314350501891	0.848246304060089	0.942625689889496
Merged-chr8-98996219-4	chr8	98996195	98996395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15592.0	NR_110579	100873092.0	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	-	predicted gene 15679	ncRNA	5.54353518562567	5.39969236696719	5.86588748094776	6.1604702342245	5.28622275826656	5.14105370534021	4.93409519009871	4.99476211909545	-1.21316922485944	0.000227757775518094	0.00405187970597411
Merged-chr15-84891870-3	chr15	84891781	84891981	+	691.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-31547.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	3.92452731128654	3.87364812754004	3.45277634751837	3.51747014109614	3.90777884499955	3.69060616649244	3.61593426158498	3.62807147372444	0.0632447354396583	0.898324504064301	0.962132593233898
Merged-chr9-110305210-5	chr9	110305125	110305325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081381)	promoter-TSS (NM_001081381)	33.0	NM_001081381	72341.0	Mm.374250	NM_001081381	ENSMUSG00000054836	Elp6	2610001P13Rik|2610002I17Rik|AV159994|Tmem103	elongator acetyltransferase complex subunit 6	protein-coding	5.37182956303746	5.65665340726692	5.99892449823138	5.54342627679262	5.55922557974602	5.91062136973108	5.73125543649292	5.70785101918193	0.117125701679742	0.676967962727697	0.867354572468851
Merged-chr8-27018603-4	chr8	27018472	27018672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-5227.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	7.83677572710907	7.79376463244189	7.98596880268261	7.95834117733409	7.8728026699376	7.83922213825297	7.64979641497206	7.63041629199579	-0.185032250233445	0.272918063131778	0.584364672732811
Merged-chr11-20112977-4	chr11	20112865	20113065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146243)	promoter-TSS (NM_146243)	-14.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	8.47930505377635	8.56018985234832	8.50584281531076	8.4299034558266	8.67765215139947	8.92779152709064	8.90646116577719	8.61915125118403	0.369564053987093	0.0168777784154616	0.114022721130803
Merged-chr19-11107965-4	chr19	11107857	11108057	+	948.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027058, intron 4 of 6)	intron (NM_027058, intron 4 of 6)	22921.0	NM_027058	69369.0	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	5.15186660635705	5.01757895517948	5.41636397704489	5.34991095778526	4.71354817125272	4.38783441248296	4.54538415393082	4.56300355605445	-1.38267891661661	7.3849259648199e-05	0.00157051582088412
Merged-chr6-56901999-4	chr6	56901913	56902113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252374)	promoter-TSS (NM_001252374)	-127.0	NM_001252374	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	6.24076098791576	6.05544587369438	6.44528934143229	6.47295641331161	6.51199367719424	6.58659053198537	6.57163421045751	6.58555671215369	0.349550119233203	0.117725359751996	0.379505363678351
Merged-chr7-19149407-4	chr7	19149311	19149511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026111)	promoter-TSS (NM_026111)	-215.0	NM_026111	67369.0	Mm.234876	NM_026111	ENSMUSG00000030407	Qpctl	1810019P04Rik|BB101812|gQC	glutaminyl-peptide cyclotransferase-like	protein-coding	8.6733315559952	8.91770992207508	8.43438508441811	8.63509551793171	8.65816999130644	8.79442452925578	8.71540494744946	8.49094300152137	-0.0113005717984203	0.946514219191682	0.980920139816526
Merged-chr5-135012231-4	chr5	135012107	135012307	+	913.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001190437)	TTS (NM_001190437)	950.0	NR_026688	69812.0	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	4.20723799168459	4.45859678350155	4.39386787096143	4.409642750099	4.50209372056378	4.64830980344066	4.23872362113427	4.55332073514777	0.270612515998218	0.470558384435015	0.749253411307965
Merged-chr5-113910714-3	chr5	113910623	113910823	+	807.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2017.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	3.70643854288761	3.4751814046648	3.79933293453869	3.84223808194505	3.47458301132302	3.28901497656826	3.59211256835979	3.55102053363578	-0.775752194330281	0.12586478655123	0.394024261860843
Merged-chr17-15938183-4	chr17	15938058	15938258	+	959.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-111572.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	5.23236753384559	4.49322671772929	4.93658898978476	5.08075889632789	5.00600204654261	4.91785547262836	4.94897661119738	5.78779061746229	0.479368338164651	0.219464661443967	0.526998014200125
Merged-chr3-142765980-4	chr3	142765872	142766072	+	971.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145546, intron 1 of 6)	intron (NM_145546, intron 1 of 6)	725.0	NM_145546	229906.0	Mm.271756	NM_145546	ENSMUSG00000028271	Gtf2b	-	general transcription factor IIB	protein-coding	4.67449952802843	5.04853366876975	5.02526996483035	4.83475841073176	4.75419974768871	4.68103350398114	4.65364116379856	4.50034144557408	-0.514617634017905	0.135538076436741	0.409815417471255
Merged-chr8-10602641-3	chr8	10602542	10602742	+	920.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001319151, intron 33 of 34)	ORR1E|LTR|ERVL-MaLR	279812.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	3.63132996277883	3.70201274602482	3.53637785164064	3.56466501873464	3.02937480711764	3.10007888364251	3.18682946344101	3.06111528885865	-2.03468772214069	0.000453812896788778	0.00713355023259525
Merged-chr15-86185077-5	chr15	86185001	86185201	+	992.8666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155352)	promoter-TSS (NR_155352)	-627.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	4.88475558381763	4.97593151655295	5.2724116166184	5.04298524461437	4.95937175538519	4.94471425129372	4.89926342867639	5.18261746020449	-0.0975274277454215	0.758113433441559	0.904927907949501
Merged-chr13-33952227-4	chr13	33952114	33952314	+	852.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040707, intron 1 of 4)	intron (NR_040707, intron 1 of 4)	-12445.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	3.92438097779519	3.82482093010602	4.28817375895382	4.43990185302049	3.98446381070936	3.87740940513066	4.14516413994887	3.97408218950493	-0.418335179876348	0.35874757716395	0.664705867104326
Merged-chr4-132167644-4	chr4	132167548	132167748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23162.0	NM_013622	18386.0	Mm.5243	NM_013622	ENSMUSG00000050511	Oprd1	DOR|DOR-1|Nbor|mDOR	opioid receptor, delta 1	protein-coding	5.82196596681679	5.76505699147418	5.79760282817441	5.91154269132599	6.06655571126625	6.55552830498267	6.17799475513715	6.08928147887361	0.620632492591021	0.012978899181069	0.0948834008678995
Merged-chr9-114781674-7	chr9	114781580	114781780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133978, exon 1 of 5)	exon (NM_133978, exon 1 of 5)	313.0	NM_133978	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	5.99288302390114	5.77406083864079	6.10493167888999	6.17554619913765	6.04241807887484	6.52996895292436	6.51468662971636	6.64387389650211	0.626609154538654	0.014926859250117	0.104460249322009
Merged-chr6-57536410-3	chr6	57536387	57536587	+	895.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1061.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	3.60783822089754	3.51475130416859	3.60835709493067	3.41205125294281	3.42636906997022	3.67287958339565	3.54192155869911	3.38433890039623	-0.0751225012973451	0.879429276072244	0.954842749021429
Merged-chr17-35188436-4	chr17	35188305	35188505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010734)	promoter-TSS (NM_010734)	35.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	5.33934526460233	5.76154786838608	5.64075985279647	5.36888277965819	5.47562960748727	5.42063699236371	5.18686051156684	5.53583867988991	-0.209817070449405	0.471595244045325	0.749975827346634
Merged-chr1-121508535-4	chr1	121508429	121508629	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19936.0	NM_010483	15564.0	Mm.4833	NM_010483	ENSMUSG00000050534	Htr5b	5-Ht5b	5-hydroxytryptamine (serotonin) receptor 5B	protein-coding	4.31683924897985	4.50416453012734	4.37368491080678	4.23023721629262	5.54156634557785	5.23282643506549	5.66554565676754	5.63002910421853	2.31436084385336	9.70506005735118e-13	1.03258067237997e-10
Merged-chr5-149229152-4	chr5	149229054	149229254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-35850.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	7.9660890285931	7.60505840290639	7.56226839010793	7.59385993614481	7.6017888362972	8.00406371977735	8.06714881398711	7.5385408404997	0.171688879386449	0.402861661501802	0.700336798242441
Merged-chr4-40722398-4	chr4	40722300	40722500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029594)	promoter-TSS (NR_029594)	-68.0	NM_008298	15502.0	Mm.27897	NM_008298	ENSMUSG00000028410	Dnaja1	HSJ-2|Hsj2|Nedd7	DnaJ heat shock protein family (Hsp40) member A1	protein-coding	8.61151195412386	8.9430165562101	8.51170865186091	8.59099072540752	8.74392493559812	9.01496464508247	8.749726894123	8.54573225298221	0.122213109694873	0.48879196072393	0.761440142089832
Merged-chr11-88099151-4	chr11	88099041	88099241	+	843.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198013)	promoter-TSS (NM_198013)	-5.0	NM_198013	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	4.36636224377482	4.22058682983297	4.66649146661679	4.2312622962039	3.98885240323184	4.26277848980856	4.38821914221546	4.36426088775022	-0.293669614073616	0.473568862012286	0.75124977120592
Merged-chr16-88483561-4	chr16	88483466	88483666	+	785.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	23412.0	NM_181490	239931.0	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding	3.54221533884244	4.0013437051517	3.81322175027294	3.73704753117608	3.86408397664298	3.31639705610336	3.88995043916511	3.76127327037822	-0.151513338336584	0.765912222205	0.908417610589867
Merged-chr13-93498507-3	chr13	93498416	93498616	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021310, exon 1 of 11)	exon (NM_021310, exon 1 of 11)	1292.0	NM_021310	57748.0	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	4.56626129733447	4.61807532261276	4.48846244708326	4.44112674988923	4.41008935876691	4.12761129394857	4.34146887386327	4.56400435427724	-0.350108671693806	0.353257095524072	0.660145561984416
Merged-chr15-76576509-5	chr15	76576419	76576619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172960, intron 1 of 14)	CpG	160.0	NR_073123	268822.0	Mm.181624	NM_172960	ENSMUSG00000022550	Adck5	A230108P17	aarF domain containing kinase 5	protein-coding	6.51341359925222	6.84260076835655	7.30455785945604	6.41504726149851	6.55132717402001	6.87035300808945	6.53229698345205	6.99605837756516	-0.0846055829733728	0.753372466980226	0.902798885097597
Merged-chr1-191288938-4	chr1	191288830	191289030	+	984.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29188.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	5.82151049805084	5.83775223880681	5.3183834977289	5.71448894764271	5.64857956368549	5.39666387872435	5.81422680435644	4.94125946329187	-0.330076338574692	0.307878492683805	0.620244628969223
Merged-chr13-112760703-4	chr13	112760599	112760799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40078.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	6.70810707957821	6.55004381772436	6.35752020905505	6.80133323282004	6.66302465488909	6.62786460539975	6.68957911642432	6.89385053638149	0.133509751653733	0.539972166604974	0.792440690679099
Merged-chr1-128020543-4	chr1	128020424	128020624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 6 of 20)	L1ME1|LINE|L1	81947.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	5.6669972302751	5.86947183625856	5.50609641895877	6.12997892581089	5.60642612137353	5.2485171297437	5.35888590685284	5.73769056516867	-0.545174662577408	0.0692867365447706	0.281525824509847
Merged-chr2-109220563-7	chr2	109220469	109220669	+	953.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029790, intron 2 of 5)	intron (NM_029790, intron 2 of 5)	57721.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	3.78212753305485	3.72513957873243	3.83284944002325	3.5533552429393	4.09746324267478	4.05010837302254	3.5472284741895	3.55829417917681	0.37046287798365	0.451194707154463	0.735800313712694
Merged-chr9-102625581-3	chr9	102625534	102625734	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181394)	promoter-TSS (NM_181394)	490.0	NM_001301689	28135.0	Mm.38910	NM_001081122	ENSMUSG00000032534	Cep63	4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2	centrosomal protein 63	protein-coding	4.24536884911675	4.74353397101575	4.69796209945575	4.54874174545773	4.8912327453742	5.01237723920326	4.42608091415659	4.80439101916641	0.484414104430752	0.193287200825887	0.493524757598945
Merged-chr4-3681737-4	chr4	3681636	3681836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	3615.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	6.67670655806554	7.02808544239451	6.73863125577042	6.81140871145367	6.90960717656041	7.02826164016253	6.74806290829493	6.86101210764333	0.0928969589695551	0.646693935427439	0.851401409677112
Merged-chr10-6753581-4	chr10	6753473	6753673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	-5020.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	5.10551140704513	5.36698200792329	5.23145369563305	5.59363818345388	5.12871512297992	4.8188187005529	4.90707633901765	4.7240030630854	-0.830512003944638	0.0121140401886657	0.0905455493635446
Merged-chr17-56218930-4	chr17	56218833	56219033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172624)	promoter-TSS (NM_172624)	-44.0	NM_172624	224897.0	Mm.205535	NM_172624	ENSMUSG00000001229	Dpp9	6430584G11Rik|A330078I11|DPP IX|DPRP2	dipeptidylpeptidase 9	protein-coding	7.41644052583329	7.57289874291406	6.98863493220451	7.15792367309064	7.56170683070324	7.34160389594304	7.31235662904523	7.23854619670769	0.0989012798832155	0.634378259510433	0.845111112089176
Merged-chr6-29484845-4	chr6	29484706	29484906	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029985, intron 34 of 37)	intron (NM_001029985, intron 34 of 37)	13369.0	NM_001145360	668210.0	Mm.420607	NM_001145360	ENSMUSG00000090685	Gm9047	EG668210	predicted gene 9047	protein-coding	5.1796688852431	4.83087686450006	4.74215199798135	4.71152208847072	5.00024847701919	4.83659182820831	5.12605514075231	4.73907378689632	0.140658946150264	0.679372747917579	0.868415010995453
Merged-chr9-53764900-3	chr9	53764803	53765003	+	686.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	-6632.0	NM_028060	72022.0	Mm.26159	NM_028060	ENSMUSG00000042195	Slc35f2	1500009K05Rik|AU019213	solute carrier family 35, member F2	protein-coding	3.72269054923262	3.28519442329522	3.39032386569055	3.99399112893304	3.70826405853781	3.7387036510973	3.43977691114083	3.61945539299833	-0.0353582698579822	0.948506554434294	0.981468586232336
Merged-chr9-64173506-4	chr9	64173396	64173596	+	986.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026507)	promoter-TSS (NM_026507)	109.0	NM_024212	67891.0	Mm.280083	NM_024212	ENSMUSG00000032399	Rpl4	2010004J23Rik	ribosomal protein L4	protein-coding	4.64034756756426	5.45283409316483	5.04541333136912	4.97309737549271	5.16525198381808	5.18622573747597	4.95000847514748	5.57285424431998	0.32728994318471	0.354628383015562	0.661322758140986
Merged-chr4-89294767-4	chr4	89294690	89294890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009877)	promoter-TSS (NM_009877)	-171.0	NM_009877	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	5.82585212050754	5.79643269449423	5.68606048775698	5.91273456729564	5.17039967231824	5.39038551852604	5.63229187625444	5.5786492565685	-0.629241016422519	0.022645496883758	0.139015422396637
Merged-chr1-161963190-3	chr1	161963088	161963288	+	726.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204904, intron 3 of 6)	intron (NM_001204904, intron 3 of 6)	5960.0	NM_001204905	75368.0	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	3.52810565669814	3.24402134163753	3.5286042430397	3.1522270420361	3.72161753781443	3.59053240126267	3.79923969119635	3.29115279393853	0.847030997689444	0.109465374999235	0.365263113300955
Merged-chr2-153742022-3	chr2	153741922	153742122	+	910.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007896, intron 1 of 6)	intron (NM_007896, intron 1 of 6)	735.0	NM_007896	13589.0	Mm.143877	NM_007896	ENSMUSG00000027479	Mapre1	5530600P05Rik|AI462499|AI504412|AW260097|BIM1p|D2Ertd459e|Eb1	microtubule-associated protein, RP/EB family, member 1	protein-coding	4.22134409608665	4.15368192754013	4.22200890687117	3.87164377373955	4.20637551556256	4.00827068479489	3.92410129919809	4.03865004012637	-0.145660087375756	0.734020716012213	0.894723473099637
Merged-chr5-36750585-4	chr5	36750476	36750676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1897.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	5.57603741701506	5.43816658130993	5.22890423713155	5.18693710969603	5.77195824793975	6.33757615105432	5.84264806512073	6.03314580062722	1.08244249397599	0.000129034387933075	0.0025135573888036
Merged-chr10-127339047-4	chr10	127339033	127339233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010296, intron 2 of 12)	intron (NM_010296, intron 2 of 12)	2446.0	NM_010296	14632.0	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	4.67572371472439	4.67901427795584	4.82856514578091	4.53825101224017	4.87746948321408	5.03514360651956	4.76942491576926	4.78902280931371	0.415253383478523	0.213188231380499	0.51843149624714
Merged-chr17-34118223-8	chr17	34118110	34118310	+	879.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204973, intron 2 of 12)	intron (NM_001204973, intron 2 of 12)	1690.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	4.10740891083397	4.218622524311	4.05816544942448	3.8289237475455	4.40871762357749	4.54132471793054	4.04113786829142	4.28746992673012	0.714831447784019	0.0852301424063647	0.317839173591588
Merged-chr2-33098023-3	chr2	33097947	33098147	+	861.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355201, intron 2 of 29)	intron (NM_001355201, intron 2 of 29)	-10794.0	NM_178888	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	3.50552412838143	3.17834240425503	3.40331112124656	3.25235250902918	3.34494544795874	2.99454835330883	3.22040082701149	3.59869617014719	-0.0926166559532034	0.870656486765295	0.951430072143722
Merged-chr17-34915532-4	chr17	34915422	34915622	+	808.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023557, intron 1 of 20)	intron (NM_023557, intron 1 of 20)	1056.0	NM_023557	70129.0	Mm.183126	NM_023557	ENSMUSG00000007034	Slc44a4	2210409B01Rik|NG22|mTPPT1	solute carrier family 44, member 4	protein-coding	3.85483921064006	3.73667036276448	3.29005117571473	3.38991903831228	3.74250123113597	3.60314790057311	3.88262439841971	3.80641385419899	0.556481343107086	0.268887373471533	0.580466285221712
Merged-chr8-72303835-4	chr8	72303758	72303958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15204.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	6.50385363473879	5.8033759336597	6.55002227904923	6.31687746243933	6.0108606171953	6.24748027010842	6.0181101496459	6.04471666733076	-0.366903208800603	0.163474365537859	0.453167225138784
Merged-chr7-109629003-4	chr7	109628909	109629109	+	882.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11862.0	NM_029811	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	4.23382327783608	4.30269599907124	4.41396838688602	4.3244692173127	4.59228271908337	4.20673482975323	4.5856626216451	4.45230985657186	0.363266621530376	0.334415821493603	0.645011968934814
Merged-chr7-127800552-4	chr7	127800433	127800633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133943)	promoter-TSS (NM_133943)	-76.0	NM_133943	101502.0	Mm.157103	NM_133943	ENSMUSG00000042289	Hsd3b7	AI195443|BB098564	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding	6.16524024373915	6.69711007746385	6.48202818957264	6.71611291439076	6.71291785025725	6.67641346775284	6.9213105771675	6.8259166226971	0.33963813140868	0.133742518401452	0.407171031535371
Merged-chr2-167751756-4	chr2	167751659	167751859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60582.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	5.62637725373533	5.68762043089138	5.48844336068468	5.69998931444606	5.62848374030468	5.44454171651468	5.95974703748717	5.79517835914265	0.141753081426739	0.599786457548744	0.826560500894977
Merged-chr17-72961069-4	chr17	72960966	72961166	+	962.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	42761.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	4.80608941650246	5.22316370209546	4.84517357055474	5.32163616872036	4.83513237286775	4.77581262228396	4.92981053411229	4.80372397539845	-0.497695899647573	0.143663314553335	0.422065835669136
Merged-chr4-84884367-4	chr4	84884268	84884468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177385)	promoter-TSS (NM_177385)	59.0	NM_177385	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	7.93353060840813	8.074209801864	7.9490664254109	8.34273747683918	7.88271337888427	7.85991450688414	8.16513753574688	7.90789217518166	-0.176388276868603	0.332690094681595	0.643580601966062
Merged-chr5-4934737-3	chr5	4934624	4934824	+	736.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 11 of 14)	intron (NM_011074, intron 11 of 14)	-176508.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	3.44961832670677	3.26743817048203	3.23475580507211	3.39424558252721	2.82499740037262	3.22331947042793	3.10153724053012	3.39759759152121	-0.736641112091083	0.213752917594033	0.519273683325109
Merged-chr10-116572143-4	chr10	116572029	116572229	+	928.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359563, intron 1 of 13)	intron (NM_001359563, intron 1 of 13)	8407.0	NM_001359250	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	4.14310297363492	4.68102737339367	4.09024872094253	4.1910733610344	4.63973654931582	4.51276669067406	4.76631395869547	4.24203399966118	0.59066790697952	0.150351576700332	0.433002771293654
Merged-chr10-80587611-3	chr10	80587511	80587711	+	818.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145421, intron 1 of 4)	intron (NM_145421, intron 1 of 4)	2730.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	3.37920313524122	3.19778374903263	3.11802898191529	3.32599354891726	2.92453170170273	2.81825791012878	2.85397079702822	3.05700046538972	-1.47171463536945	0.0165073125309518	0.112314908938222
Merged-chr12-91590230-6	chr12	91590091	91590291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031391)	promoter-TSS (NM_031391)	296.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	8.49252914295936	8.41317289844669	7.95557916878533	8.03219472563655	8.37754912948631	8.58727943900054	8.43034620351594	8.33527079523014	0.246400501155075	0.184242042189744	0.481566019629658
Merged-chr7-16254464-4	chr7	16254366	16254566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	intron (NM_001173550, intron 1 of 1)	4872.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	8.18053792516815	8.35883537005982	8.67702017364811	8.3625739686983	8.10148859048665	8.11904500457183	8.16125170406851	7.89856011650854	-0.422520116238233	0.0158796299528173	0.109122399656544
Merged-chr3-8098530-3	chr3	8098401	8098601	+	589.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-143614.0	NR_040587	75476.0	Mm.491752	NR_040587	ENSMUSG00000100010	1700010I02Rik	-	RIKEN cDNA 1700010I02 gene	ncRNA	3.22587497241243	3.21309469226108	3.22629162130134	3.21451032888002	2.9860064042393	3.27805733003586	3.32422938890006	3.33592025620709	0.0475599789526777	0.930781658306717	0.975127427167494
Merged-chr2-154570019-4	chr2	154569905	154570105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291105)	promoter-TSS (NM_001291105)	-113.0	NM_007891	13555.0	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|Tg(Wnt1-cre)2Sor|mKIAA4009	E2F transcription factor 1	protein-coding	7.95343932245217	8.29286897608795	8.02483378388651	8.08330952449044	8.32285523097356	8.08840445041067	8.42837719420842	8.11139801918863	0.193927728764073	0.261141503740403	0.57302518943024
Merged-chr10-81464509-3	chr10	81464394	81464594	+	953.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176954, intron 9 of 11)	CpG-1367	8637.0	NM_001311127	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	3.9174842665551	3.97929163411506	4.08809322273557	3.71504697394522	3.7217190112956	3.47220949576994	3.59706986063319	3.5497528757201	-0.998180997683948	0.0410149701872665	0.204827374093836
Merged-chr17-8284544-3	chr17	8284444	8284644	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018819, intron 1 of 3)	CpG	731.0	NM_018819	55951.0	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	4.36141557835066	4.09844359991928	4.52620517556051	3.99787187700859	4.45486878729989	4.53541590988437	4.61411430296637	4.40232014961429	0.612008604433867	0.120516798823142	0.384313660832061
Merged-chr7-142373480-2	chr7	142373404	142373604	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347541, intron 1 of 2)	intron (NM_001347541, intron 1 of 2)	242.0	NM_001347541	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	2.3715162291673	2.25215868322853	2.22285443951509	2.40530233176005	2.56916502343461	2.61104567880448	2.56068377650792	2.83766995552336	1.83424061737742	0.0149325637804803	0.10447070545811
Merged-chr12-111035353-4	chr12	111035261	111035461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4437.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	6.13924319734498	5.63405232899115	5.66588505474622	5.65106102377648	5.97280583195003	6.23659291661316	6.16365780997782	5.66188793562363	0.389731540916806	0.160598606860632	0.448824160022381
Merged-chr5-66081183-4	chr5	66081063	66081263	+	898.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	17016.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.0503507978554	4.35773511091636	4.37825871215238	4.38770178426603	4.86233914468198	4.35947065612772	4.57126741754428	4.46555076939506	0.0405234250287862	0.921487028390903	0.970886721487516
Merged-chr17-33920400-4	chr17	33920286	33920486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009318, exon 3 of 8)	exon (NM_009318, exon 3 of 8)	908.0	NM_009318	21356.0	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	6.07705295458848	5.91458967192819	5.92913045142609	5.21842936361579	5.93577683625217	6.4204647414135	6.10531783637974	5.8312075956775	0.444873976421966	0.148490728314714	0.430263445988726
Merged-chr1-107589978-4	chr1	107589891	107590091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011459)	promoter-TSS (NM_011459)	-15.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	6.12502910527268	5.7592612607563	5.60631908414076	5.80177808771007	6.06132810575279	6.11384755252862	6.33864129568999	5.81656437816081	0.413785779530633	0.115119992788251	0.375422103710937
Merged-chr17-24804317-4	chr17	24804224	24804424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029197)	promoter-TSS (NM_029197)	-58.0	NM_029197	75178.0	Mm.52592	NM_029197	ENSMUSG00000024155	Meiob	4930528F23Rik|MLZ-675	meiosis specific with OB domains	protein-coding	5.58626743138279	5.61401674065547	5.45609770570104	5.29672853090517	5.28152189107083	5.38974371935347	5.04760033504131	5.53251113596608	-0.286616171137199	0.331998019608935	0.643072511197915
Merged-chr6-55230653-2	chr6	55230553	55230753	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142781, intron 5 of 17)	MIRc|SINE|MIR	27270.0	NM_001142781	330323.0	Mm.268997	NM_177883	ENSMUSG00000038022	Mindy4	C330043M08Rik|Fam188b|Gm1406	MINDY lysine 48 deubiquitinase 4	protein-coding	2.29211243275778	2.09698088070213	2.13467844852997	2.13650266649729	2.63108065010489	2.54098904697967	2.66595381711463	2.61974005939513	2.76693420097153	0.000368342605686859	0.0059968568916251
Merged-chr18-84688511-4	chr18	84688420	84688620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2818.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	6.3680217919927	6.32941924079148	6.0640596269066	6.19462338289636	6.66365100704533	6.59805689443976	6.5045727123731	6.6098981664181	0.526252432240487	0.0141737920515054	0.100791731479031
Merged-chr6-29917010-4	chr6	29916912	29917112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104576)	promoter-TSS (NR_104576)	-1.0	NM_177204	320609.0	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	5.8657733246546	6.05783682472379	5.79506641900113	5.72740254498259	5.88990224968167	5.84242796450821	6.00938587253873	5.90829123916425	0.0868112140266296	0.72607890975504	0.891025770427008
Merged-chr11-121713755-4	chr11	121713598	121713798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 2 of 3)	intron (NM_144797, intron 2 of 3)	11271.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	5.19498632008628	5.11679508386834	4.99907377388322	5.43216093447496	5.26748543859664	4.81464444756913	5.00980962223466	4.95979810744029	-0.330816439208993	0.312160415697258	0.624101629934136
Merged-chr18-88824731-4	chr18	88824630	88824830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	69477.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	6.5696016596056	6.92676325801516	6.92659481276297	7.35225994907854	6.83284992288662	6.78241927738476	6.9903598119166	6.63275167840055	-0.244996539564758	0.303989491838858	0.616696040763071
Merged-chr19-5388737-4	chr19	5388609	5388809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016882)	promoter-TSS (NM_016882)	-6.0	NM_016882	20227.0	Mm.34562	NM_016882	ENSMUSG00000039148	Sart1	U5-110K	squamous cell carcinoma antigen recognized by T cells 1	protein-coding	7.11960454622233	6.98725440268265	6.61972582004049	6.81602422562371	7.06134685750139	7.02413494101293	6.91869209473911	6.85634534712945	0.104768333772069	0.61146424528248	0.832299036485985
Merged-chr16-58299694-3	chr16	58299595	58299795	+	713.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108840.0	NM_001356484	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	3.36620964523853	3.46740024021931	3.36666190565992	3.45328475738128	3.02475793779417	3.29985582186782	3.40714935305486	3.30824026265646	-0.572423946172633	0.2890177163292	0.600975490946689
Merged-chr13-52603893-2	chr13	52603793	52603993	+	882.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	7011.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	2.93676264275808	3.24288980740112	2.93712655532982	2.71600187640565	2.98009232735239	2.77056061545557	2.79931186100601	3.05296631921714	-0.256985127197589	0.688174815098826	0.872645510806949
Merged-chr17-64602104-6	chr17	64601914	64602114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	CpG-6542	365.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	5.41378230332131	5.26582795682937	5.41471536914764	5.42723393034788	5.42429232120156	5.23780335572068	5.59267473144767	5.19721545860335	-0.011796155872623	0.967094321504982	0.988455138025123
Merged-chr6-129363430-4	chr6	129363332	129363532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177686, intron 5 of 5)	Lx7|LINE|L1	13188.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	6.33959299786066	6.51022095533979	6.90269247006791	6.34608654275264	5.7349793345844	6.04181627233665	5.42303658371558	5.75298979219887	-1.21639696151764	8.58878773078695e-06	0.000240401620876793
Merged-chr2-135562731-3	chr2	135562632	135562832	+	835.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A1|LTR|ERVL	20488.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	3.38978285882711	2.98825347544502	3.60421436030235	3.54851130575105	3.46470351045764	3.38148494633491	3.63641499402558	3.55190009421312	0.344085164260351	0.537214805288308	0.790977285921248
Merged-chr11-5261762-4	chr11	5261662	5261862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032396)	promoter-TSS (NM_032396)	-152.0	NM_032396	84035.0	Mm.209989	NM_032396	ENSMUSG00000020393	Kremen1	AV002070|Kremen|Krm1	kringle containing transmembrane protein 1	protein-coding	7.10315370512456	7.33730525574858	6.99185341620774	7.03840362459796	7.30396200189015	7.30502954766704	7.39229994752916	7.06301063656081	0.203753794108577	0.292507436402449	0.604839404342733
Merged-chr4-21776879-2	chr4	21776779	21776979	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_152825, intron 1 of 17)	intron (NM_152825, intron 1 of 17)	609.0	NM_152825	77593.0	Mm.154306	NM_152825	ENSMUSG00000040455	Usp45	3110003C05Rik|4930550B20Rik|AI843191|Gcap7	ubiquitin specific petidase 45	protein-coding	3.14024669393514	3.15074036334053	3.07601887252984	3.52631716689452	3.39763830147336	3.372181252606	3.1910001581278	3.31535911833847	0.24881489481194	0.663429071690575	0.860541556152409
Merged-chr13-52600480-4	chr13	52600379	52600579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	3597.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	6.82021204385296	7.72031185822077	7.43236711618962	6.81902182432316	7.28701775371858	6.98514622860543	7.03587809367342	6.16618759149274	-0.439501682430598	0.153551296888883	0.438299020903824
Merged-chr15-89430890-4	chr15	89430786	89430986	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_004843)	promoter-TSS (NR_004843)	-959.0	NR_037153	12651.0	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	4.28063514844785	4.13844218361166	4.14738052914596	3.91555105863909	4.21700176881921	4.12235961033254	3.9816401584398	4.57808532239645	0.325845760434215	0.443154407642322	0.729779110682633
Merged-chr11-44356402-4	chr11	44356286	44356486	+	891.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-43677.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	4.07872957611722	3.41666023152478	4.03292579331968	3.95125996650937	4.25774859744007	4.00520385542839	3.96772276801764	4.24694122505178	0.623718014482979	0.186746558834188	0.484806817100395
Merged-chr3-133650254-2	chr3	133650154	133650354	+	773.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105864.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	3.39503424564598	3.3081578931828	3.39553086086777	3.02841736598612	3.37252592722508	2.93208648170684	3.38117144321232	3.04147316149708	-0.302637067052105	0.612415856369123	0.832734411532616
Merged-chr9-72089123-4	chr9	72089024	72089224	+	916.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011544, intron 3 of 20)	L1MEc|LINE|L1	22077.0	NM_001253862	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	4.34221663287165	4.54392841217364	4.72697203512603	4.32036407743995	4.45638607754311	4.22259451071135	4.36730080450706	4.34019639180259	-0.299963856179411	0.436748006867323	0.725278104435332
Merged-chr5-67892388-4	chr5	67892274	67892474	+	895.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44943.0	NM_001038999	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	4.27458701276607	4.01776568378845	4.40350329227988	4.70238449493433	4.50982729015258	4.30822317683712	4.30008494381539	3.9131137322851	-0.249971023640735	0.573611120138442	0.811888602285473
Merged-chr15-44427993-4	chr15	44427893	44428093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175009)	promoter-TSS (NM_175009)	-118.0	NM_175009	223527.0	Mm.291828	NM_175009	ENSMUSG00000022338	Eny2	1810057B09Rik|6720481I12|DC6|Ey2	ENY2 transcription and export complex 2 subunit	protein-coding	9.13749367602555	9.06557848777183	9.16141813109831	9.40247419114211	9.14480705370726	9.22578458911832	9.35312136640188	9.126762291283	0.0146404017052463	0.923581873569623	0.97180059474
Merged-chr3-116251748-4	chr3	116251647	116251847	+	866.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022427, exon 2 of 2)	exon (NM_022427, exon 2 of 2)	1737.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	4.28731906946399	4.06927856897547	4.20059674405878	4.53576868615723	4.05663203708482	3.83452984844142	3.93644957631593	4.55016989690356	-0.421513285041757	0.354131221166021	0.660882152837529
Merged-chr11-76454701-2	chr11	76454601	76454801	+	766.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 12 of 21)	intron (NM_001346670, intron 12 of 21)	13764.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	3.03404973614038	2.82488525635883	2.84756310807161	2.98782563585803	3.04551493343196	3.08338289889731	2.96457290635908	3.03285190516903	0.429079004033982	0.460556934434208	0.742687499720882
Merged-chr13-43772039-4	chr13	43771959	43772159	+	914.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13053.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	4.01635141163016	3.94970110371123	4.36887126399208	4.2906136874794	3.79364800004556	4.03434042815386	4.3095983609947	4.20240234759876	-0.206328368907764	0.639252699936402	0.84753238716798
Merged-chr1-93070691-2	chr1	93070591	93070791	+	813.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294150, intron 9 of 46)	intron (NM_001294150, intron 9 of 46)	11789.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	3.33342342524657	3.42215634262267	3.5081610726089	3.09925729749442	3.27980167882893	3.83039616654743	3.64550221149712	3.5061403402595	0.79241379957412	0.138380773455621	0.413839967807975
Merged-chr5-142903207-1	chr5	142903107	142903307	+	591.0	f0_c57.idr	TTS (NM_007393)	TTS (NM_007393)	3547.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	2.8042407147228	2.87739797135851	2.8045765398639	2.33382132824207	2.9189352689716	3.16200814932311	2.85908093493149	2.98946341586268	1.20828318149995	0.0820352577185103	0.31095897375364
Merged-chr16-33777408-4	chr16	33777365	33777565	+	917.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-16572.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	4.2251418254392	5.15967857517631	4.22575155895041	4.72385259289411	4.34901654672277	4.35510414349359	4.60616847734873	4.73522943856762	-0.285672949617075	0.514040614094283	0.776850822111233
Merged-chr18-34338872-3	chr18	34338775	34338975	+	649.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	7730.0	NM_025527	66384.0	Mm.29452	NM_025527	ENSMUSG00000014504	Srp19	2310020D23Rik	signal recognition particle 19	protein-coding	3.57553933337256	3.2374632485239	3.67606416483117	3.42856867326662	3.10653386706391	3.79626243270119	3.39690767419715	3.57394618631577	0.005500997308227	0.992110365357505	0.997004077690413
Merged-chr10-34532782-4	chr10	34532679	34532879	+	959.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358769, intron 2 of 8)	MTD|LTR|ERVL-MaLR	49379.0	NM_010237	14302.0	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	4.5636424915697	4.71846258770556	4.29541925028159	4.43560524905499	4.74315156723583	4.69624122659133	4.50264840466563	4.63978571763224	0.312397602150101	0.38507893429123	0.686491183006874
Merged-chr1-180826901-6	chr1	180826815	180827015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-13310.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	4.95155893462093	5.32551601836251	5.34069859417772	5.10088735639251	5.2188315978703	5.65902313104329	5.76691543397816	5.85467043691454	0.793489437856392	0.0103911078155854	0.0811708366116717
Merged-chr5-72511366-2	chr5	72511266	72511466	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6826.0	NM_001122756	53419.0	Mm.332425	NM_016869	ENSMUSG00000005220	Corin	AV273130|Lrp4	corin	protein-coding	3.31283269639762	3.08848681625175	3.73425913061047	3.19132099096578	3.42175809940589	3.42908080615743	3.36107555181573	3.85914636598548	0.614152000703945	0.276225135266193	0.588295649535093
Merged-chr15-74926920-5	chr15	74926909	74927109	+	986.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31A|LTR|ERV1	-28042.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	4.66121807580248	4.75334519380998	4.90503904682336	4.61604746227086	5.3100586369109	5.34263790498276	5.17457157570951	5.13710324998686	1.01328802283706	0.00107039125437645	0.0142064850075072
Merged-chr11-101984839-4	chr11	101984728	101984928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028207)	promoter-TSS (NM_028207)	-37.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	7.01602309420172	6.78917629816264	6.34143282997231	6.6406224577197	7.25005478949125	7.32057550800348	7.10842617201943	6.96267308374027	0.628796782269563	0.004463694379595	0.0436730312364526
Merged-chr15-72837954-3	chr15	72837858	72838058	+	855.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164641, intron 17 of 17)	intron (NM_001164641, intron 17 of 17)	-27634.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	4.09641470302959	3.92501085191637	3.70447419311241	3.83724566682782	3.83293080324056	3.88016442456093	3.79907164162273	4.0515748510864	-0.00560147795398169	0.989928015226295	0.99600840647023
Merged-chr13-37666526-4	chr13	37666463	37666663	+	847.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-159475.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.22144809648501	4.8573483399062	4.39410662080622	3.76578826918939	4.01888870353321	4.30368057424141	4.10876641166455	4.07385713624098	-0.585507648391815	0.222099811105829	0.53010635640093
Merged-chr11-101687943-4	chr11	101687830	101688030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22389.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	5.99661482345079	6.19754725937149	6.08143033700901	6.20664068640915	5.81551836856668	6.10652609500243	5.85456748369923	5.67539959312423	-0.417173313062728	0.0895753218985182	0.326714389310366
Merged-chr5-67821441-4	chr5	67821319	67821519	+	991.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	C-rich|Low_complexity|Low_complexity	26012.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	5.52719129791668	4.95830351715133	5.09441199520459	5.49951113052832	5.33504004286619	5.20012313505354	5.03511038615396	5.12495989348037	-0.218878477983392	0.497451830585099	0.767090358309685
Merged-chr15-12380739-4	chr15	12380639	12380839	+	902.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081064, intron 18 of 23)	intron (NM_001081064, intron 18 of 23)	59243.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	4.90470144957162	4.62141082575835	4.71826360140831	4.70755926624423	4.89800997968023	5.00717017887443	5.15923819711147	4.7933138724048	0.470118098566443	0.152217636206267	0.436179513990576
Merged-chr18-23752297-4	chr18	23752204	23752404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162942)	promoter-TSS (NM_001162942)	1.0	NR_126066	100502834.0	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	-	predicted gene 15972	ncRNA	6.63804630049625	6.40550579167397	6.05896201056531	6.18097562170491	6.31325619482353	6.66024497647278	6.53083950779172	6.42997644101607	0.224601750528952	0.349259997768818	0.656818637583855
Merged-chr15-93399373-3	chr15	93399260	93399460	+	856.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001358749, exon 2 of 9)	5' UTR (NM_001358749, exon 2 of 9)	896.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	2.84069626495179	2.95684998316525	3.17741703989697	2.96332974378229	3.29778180365438	3.16488400900268	3.2227040843263	3.66347753074393	1.38341569059604	0.0168111399512027	0.11366962388018
Merged-chr13-103703600-4	chr13	103703501	103703701	+	800.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136924, intron 1 of 3)	intron (NR_136924, intron 1 of 3)	4032.0	NR_136924	102632492.0	Mm.383874	NR_136924	ENSMUSG00000114206	Gm30551	Gm30710	predicted gene, 30551	ncRNA	3.78784265727282	4.00192170795503	3.78832349944441	4.14975883690338	4.14221664412247	3.9064455462366	4.27265555063641	4.04082721286151	0.380136643475104	0.391269398428728	0.691040061984853
Merged-chr17-46302093-4	chr17	46301991	46302191	+	898.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286013, intron 5 of 5)	intron (NM_001286013, intron 5 of 5)	4163.0	NM_001286013	106565.0	Mm.23633	NM_134120	ENSMUSG00000047428	Dlk2	AI413481|DLK-2|Egfl9	delta like non-canonical Notch ligand 2	protein-coding	4.20530337060853	4.18651976946736	4.33640960070876	3.75778414910864	3.9782249391135	4.07960745988316	4.43322375159665	4.55965030102251	0.385390368653547	0.390087778590802	0.690245822100553
Merged-chr12-85477471-4	chr12	85477350	85477550	+	964.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010234)	TTS (NM_010234)	3560.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	5.62977620060895	5.01588417157403	4.61382606729063	4.45314019078234	5.18321548096288	5.66735508317897	4.63817060479139	4.74408533393175	0.210859356506805	0.641637983649309	0.848835113142923
Merged-chr7-27685924-4	chr7	27685823	27686023	+	713.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198417, intron 1 of 5)	intron (NM_198417, intron 1 of 5)	-3417.0	NM_001112731	112415.0	Mm.145362	NM_198417	ENSMUSG00000057093	Zfp607b	C030039L03Rik	zinc finger protein 607B	protein-coding	3.81243423143991	3.94566962180293	3.81297358102626	3.98409684717927	3.70363800608267	3.64953545161999	3.63970081624845	3.9526621048335	-0.462480221791222	0.311730307445539	0.623665218229603
Merged-chr11-95714091-4	chr11	95713990	95714190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1336.0	NR_045780	432396.0	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	6.1963315111643	6.01816444101892	5.38039622429581	5.8400825923042	6.0579015206881	6.01750044462463	5.85877375450607	6.1746259674746	0.223788322528101	0.41769191691772	0.711430250427875
Merged-chr6-108721816-3	chr6	108721719	108721919	+	778.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60885.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	3.74595860774558	3.59491676728498	3.84405836296292	4.58883075245315	3.11576427359801	3.38180933329711	3.32320156212266	3.52461599989439	-2.21893424797558	0.000229054400553237	0.00406986100274061
Merged-chr1-136018031-4	chr1	136017924	136018124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160146)	promoter-TSS (NM_001160146)	23.0	NM_025439	66241.0	Mm.41773	NM_025439	ENSMUSG00000026411	Tmem9	1500015G18Rik|AW545782	transmembrane protein 9	protein-coding	6.08153433602506	6.31670301790653	5.97693712247443	5.96270451280867	5.90567116337078	5.93865633798654	6.18511395146647	5.59010721086501	-0.262376775492299	0.315505890468766	0.627336548904304
Merged-chr18-49552965-4	chr18	49552869	49553069	+	928.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29680.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	4.6720283163804	4.91242669595613	5.0298745616408	5.0739567229186	4.67204132814194	4.6283033070016	4.94229030424064	4.78758749186975	-0.372958479777073	0.272029214575716	0.583620202679112
Merged-chr14-120741861-4	chr14	120741751	120741951	+	931.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-169343.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	5.0854111564397	4.91903107687408	6.0346845561476	6.11877221825844	4.79100452187748	5.03481322272312	4.98758939454347	5.31352820930072	-1.09633233974201	0.00667289297139716	0.0587325150007516
Merged-chr4-116052876-4	chr4	116052772	116052972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028142, intron 1 of 5)	intron (NM_028142, intron 1 of 5)	1004.0	NM_028142	72181.0	Mm.282560	NM_028142	ENSMUSG00000028706	Nsun4	2310010O12Rik|2810405F18Rik|AI507900|Shtap	NOL1/NOP2/Sun domain family, member 4	protein-coding	5.97711538183698	5.69570508395641	5.93331299452853	6.14776075190872	5.82904910679037	6.06289594282623	6.05264612520755	6.28433449180404	0.155568709438137	0.548475122980523	0.797465239069159
Merged-chr7-27446833-4	chr7	27446699	27446899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032610)	promoter-TSS (NM_032610)	-210.0	NM_032610	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	6.60555089575803	6.32269666783592	6.63674811675912	6.63914612636057	6.38770490403459	6.45582880952329	6.68846691413973	6.1280511388353	-0.191136478176445	0.40969701152099	0.705256607406139
Merged-chr8-34918625-4	chr8	34918506	34918706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 2 of 26)	intron (NM_175091, intron 2 of 26)	47084.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	6.59548588425175	6.10662373165586	5.89313525646361	7.06316783037774	5.96501666950082	6.09676311180769	5.42930390901842	6.02925844987744	-0.919767002071622	0.00576965383530925	0.0527931855435759
Merged-chr4-155841197-4	chr4	155841124	155841324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024263, intron 3 of 9)	CpG	1544.0	NM_024263	74761.0	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	6.26453215759599	6.20054275072049	6.76587490819868	6.51609170560235	6.09755612495839	6.06790705234992	6.36068402610063	6.38886717178061	-0.334167633797456	0.175226492812318	0.469912833953675
Merged-chr2-154737193-3	chr2	154737144	154737344	+	843.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-53866.0	NM_001139512	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	4.40373542923014	4.46002615380664	4.14694816496028	4.33822651987029	2.94702807791307	3.20897672202777	3.24040870147697	3.24913562400112	-5.72172572922732	8.97219392877142e-09	4.80174279440617e-07
Merged-chr10-13016743-4	chr10	13016645	13016845	+	822.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8295.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	4.88022417334236	4.74914418424961	4.3575976156897	5.00377346955642	4.65393493851524	4.53695941147209	4.43369040604275	4.84431708113438	-0.330734093002829	0.380588608669709	0.682959506520613
Merged-chr7-101362903-4	chr7	101362807	101363007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	14838.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	8.35125957157693	8.5752834043669	8.48041304214664	8.31248481044888	8.37165503802471	8.2873832348315	8.20710804403841	8.07792837763574	-0.237976609585381	0.142290578262623	0.419796840696448
Merged-chr6-5390389-3	chr6	5390295	5390495	+	998.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355662)	promoter-TSS (NM_001355662)	-15.0	NM_001355662	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	4.25324479335299	4.29320851503144	4.75548615495201	4.5407098029166	4.16208428155934	4.02634739966972	3.70500377945654	3.84138100241009	-1.33013877355105	0.00325265804811828	0.0340035408122956
Merged-chr4-9116016-4	chr4	9115901	9116101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-153292.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	7.27944244404241	7.14231781253842	7.00915717251403	7.29719598851056	7.50655425895683	7.51965980459349	7.32626435554441	7.32758906345772	0.310878321474799	0.0923185136718225	0.332362525145246
Merged-chr11-98052757-3	chr11	98052646	98052846	+	908.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146028, intron 1 of 10)	CpG	716.0	NM_146028	217154.0	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	3.78233663166583	3.66303724109978	3.43245644343394	3.60735535515699	3.44508717991075	3.35906240830832	3.36163168050319	3.37185791339681	-0.808489901817633	0.1121894912555	0.370214573860373
Merged-chr4-135273533-2	chr4	135273433	135273633	+	765.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013885)	promoter-TSS (NM_013885)	-773.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	3.01550795663995	2.96808302493783	3.19155842676724	2.73137964329146	2.98822323422903	2.92316515797313	2.94165167197833	3.48126412721261	0.501566605724617	0.423299615679502	0.715220118828193
Merged-chr1-52232438-4	chr1	52232345	52232545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081081, intron 1 of 17)	CpG	787.0	NM_001081081	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	6.48885480788848	6.76361508312278	6.65530879931486	6.61563149402575	6.86458008050055	6.8772579936299	6.94568110403986	6.61920946419357	0.281809601859563	0.168923343687777	0.461434405627041
Merged-chr12-117566540-4	chr12	117566494	117566694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 3 of 27)	intron (NM_175930, intron 3 of 27)	50115.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	4.60533003062603	4.65986196491363	5.01055895165971	4.63750212385994	4.60847458249875	4.74038081710645	4.92172356531834	5.20967379898945	0.313805225967205	0.382104937902851	0.684238214631303
Merged-chr5-110449309-4	chr5	110449198	110449398	+	916.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142642)	promoter-TSS (NM_001142642)	-795.0	NM_001142642	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	4.68362270971545	4.55178800833363	4.64458408931482	4.77939628015657	4.70860863672392	5.10178478259966	4.540486466755	4.71986200974864	0.217854801001014	0.537831803814202	0.791242329033072
Merged-chr15-34046545-4	chr15	34046436	34046636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36183.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	8.53194330796863	8.57248435986527	8.73609793650541	8.49262282398215	8.51579129429031	8.48027017391704	8.54544521987802	8.23217719680092	-0.167040288719771	0.292573343588996	0.604940538077593
Merged-chr12-75735096-1	chr12	75734996	75735196	+	932.0	f0_balb.idr	exon (NM_030750, exon 1 of 3)	exon (NM_030750, exon 1 of 3)	633.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	3.94643766159089	3.69782530814216	4.35294388630686	3.48538349741054	3.89391683397287	3.74304536242736	3.66826470083545	4.12285478534327	-0.0965256034925297	0.851574185940175	0.944028765590514
Merged-chr1-37867258-4	chr1	37867159	37867359	+	734.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1961.0	NM_001290720	211484.0	Mm.332756	NM_207228	ENSMUSG00000060771	Tsga10	4933432N21Rik|AI843383|Gm217|Mtsga10	testis specific 10	protein-coding	4.15344124751314	4.52501248468719	3.64025660653064	3.9560947880415	4.22362045087156	4.54156061884074	4.42787264789827	4.001159071221	0.501640092387535	0.289546359462266	0.601565099829675
Merged-chr6-50305129-4	chr6	50305016	50305216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027881, intron 18 of 21)	intron (NM_027881, intron 18 of 21)	-43347.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	8.32002495420739	8.43042761925456	8.48171109470355	8.19070411992617	8.45312890854828	8.33385969311592	8.26021879956103	8.24787954185212	-0.0320034731038478	0.841614783763681	0.939882709487764
Merged-chr9-75559581-4	chr9	75559437	75559637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_016963, exon 1 of 10)	5' UTR (NM_016963, exon 1 of 10)	120.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	6.66272411691642	6.40378728064754	6.70708850922579	6.58154135402614	6.30524784214388	6.54468892519139	6.45825661142474	6.50347722251094	-0.207039861497387	0.334464928057164	0.645033031163456
Merged-chr1-134077856-4	chr1	134077740	134077940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007570, intron 1 of 1)	intron (NM_007570, intron 1 of 1)	1315.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	6.33944579483367	6.37251758255738	6.65932064457597	6.51128397682107	6.46393413776759	6.59143542722216	6.77789718914829	6.69822779235769	0.224657763527823	0.29937578018182	0.611562066856898
Merged-chr2-167368623-4	chr2	167368508	167368708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19430.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	7.48258781764667	7.20789293489713	7.51044503692778	7.38901714013544	7.25611758905415	7.06554451925808	7.00119928067432	7.16499814072811	-0.362864700053413	0.0533652487350265	0.241066512642663
Merged-chr2-44922694-4	chr2	44922593	44922793	+	851.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61071.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	4.00796156775165	3.71937386613419	4.00857134312531	4.11891235756774	3.85883085028103	3.70240955092225	3.94560302475214	3.75858001106618	-0.444164324580495	0.326137907221368	0.637699368132015
Merged-chr14-48459098-4	chr14	48458992	48459192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310584, intron 4 of 16)	intron (NM_001310584, intron 4 of 16)	12740.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	6.93999415038335	6.57728242936194	6.91513516915517	7.32948658954423	7.12731415594005	6.74694097305166	7.10737401688409	6.66375598821314	-0.0657129354009722	0.78916564522157	0.91835324030065
Merged-chr15-98517524-4	chr15	98517401	98517601	+	929.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001289437)	TTS (NM_001289437)	2333.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	4.12932873615975	4.56313603334954	4.55485774135994	4.14561170119003	4.49010339926964	4.15001413350159	4.00918894478829	4.35726239192618	-0.202285640295027	0.633463894839175	0.844654126311447
Merged-chr3-89322983-4	chr3	89322880	89323080	+	841.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010108)	promoter-TSS (NM_010108)	-101.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	4.0270924256259	3.77981177148106	3.35416806134142	3.96477025554961	4.12831365611906	3.95991749123148	3.91986410140239	3.6752026086245	0.342189814492543	0.497282210314323	0.766982020988234
Merged-chr1-84428834-3	chr1	84428703	84428903	+	799.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 8 of 12)	intron (NM_152915, intron 8 of 12)	-144158.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	3.74404821670847	3.46007374071748	3.74458200442531	3.89522808980479	3.8227654094237	3.44450585926393	3.62492746540372	3.97294071543097	0.0221387787513882	0.964664894880588	0.98746538769534
Merged-chr7-105766871-2	chr7	105766771	105766971	+	974.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162943, intron 2 of 20)	Tigger17a|DNA|TcMar-Tigger	-14636.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	3.32650519219328	3.15353416633453	3.1545726822737	3.04956509532555	3.08301372994287	3.44138930428537	3.25912830351503	3.21292996427252	0.315021071407718	0.566462264834991	0.807900514541786
Merged-chr4-6415420-4	chr4	6415298	6415498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 21 of 30)	intron (NM_010945, intron 21 of 30)	38873.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	8.58375595639069	8.75224703016163	9.03631502259382	8.9951620532495	8.89611466804602	8.88216835456687	8.89882931392447	8.59871428047514	-0.0399546836096896	0.815407365324238	0.928768919159139
Merged-chr16-95728992-4	chr16	95728895	95729095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26588.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	8.82051688929845	9.03992302623787	9.02228205351609	8.75247670064977	8.89076579478191	9.04727728927875	8.94399843371306	8.7919541175308	0.0114718851826099	0.94073698088126	0.978654793543509
Merged-chr5-135461067-6	chr5	135461048	135461248	+	853.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-66602.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	3.35289838608768	3.13253282375219	3.13272356024173	3.44695297358313	3.13068117882413	3.11410975400575	3.06103145777242	3.06965735765046	-0.732708429116633	0.197525945891874	0.498942450145062
Merged-chr13-23424706-4	chr13	23424626	23424826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013924)	promoter-TSS (NM_013924)	-860.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	6.58284826728153	6.64245230390994	6.72127041056168	6.70717123105491	6.68763474236232	6.53281943659103	6.94591267949538	6.40704545579389	-0.00667292547902873	0.975551772588363	0.99134555815643
Merged-chr12-12172301-3	chr12	12172202	12172402	+	938.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89837.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	3.3392265692516	3.3130087498404	4.22779232059689	4.18556507938815	3.99883003000028	3.84570294441537	3.70992969397718	4.10646792201449	0.220561516733729	0.712939595497837	0.885140027660117
Merged-chr7-126746997-4	chr7	126746948	126747148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12578.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	6.78083610573146	7.31587040978466	6.65954774886252	6.29103414288971	7.24224980873	7.23265201152168	7.00881019498649	6.65479117871967	0.343400458721899	0.211571754397276	0.516283242697512
Merged-chr10-94904804-4	chr10	94904699	94904899	+	894.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 4 of 30)	intron (NM_018797, intron 4 of 30)	39779.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	4.54321418543428	4.27582544281987	4.13307621245933	4.27041015413282	4.28987889616942	3.79548977593648	4.4132683616516	4.08127617499165	-0.342932526768681	0.425945541746475	0.71734006189453
Merged-chr1-7086177-4	chr1	7086094	7086294	+	986.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2726.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	4.94438973519459	4.62973955070791	4.73586969495812	4.72210062223519	4.75683120909299	4.87052232398056	4.82156678241841	4.43573799418938	-0.0545285710238995	0.87517664720183	0.95304713758329
Merged-chr19-4085181-4	chr19	4085081	4085281	+	775.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013878, intron 3 of 6)	intron (NM_013878, intron 3 of 6)	1662.0	NM_013878	29866.0	Mm.46268	NM_013878	ENSMUSG00000024857	Cabp2	-	calcium binding protein 2	protein-coding	4.1582719691273	3.99197755460248	4.29253803207757	3.91965970248502	4.35255859366661	4.23662708483148	4.46630228159561	4.10862237194198	0.54479860011628	0.18063306628011	0.477043671146927
Merged-chr15-89174056-4	chr15	89173948	89174148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159521)	promoter-TSS (NM_001159521)	-97.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	6.39286319164218	6.34068515761534	6.32360255976432	6.40392053124974	6.21615978596647	6.12515610510104	6.49052495765914	5.99031082238775	-0.222241239868688	0.335638597410014	0.645927430703489
Merged-chr6-51551665-6	chr6	51551492	51551692	+	943.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 1 of 6)	MTC|LTR|ERVL-MaLR	6299.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	5.14105652777954	5.09466628234232	5.0446493415395	5.07854449939579	4.86613373746871	5.28255655476654	4.84110405574221	5.07445193039014	-0.136072005501622	0.665331633696921	0.861345562192633
Merged-chr16-20361903-4	chr16	20361800	20362000	+	967.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013790, intron 24 of 29)	RLTR9E|LTR|ERVK	-36496.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	4.72143686648011	5.1727936516523	5.04746544476455	4.87894970196271	5.01650086015776	4.89740316583331	4.9578860294124	4.75935439283883	-0.0939451648653292	0.775352083122884	0.912320643528997
Merged-chr9-41951249-4	chr9	41951168	41951368	+	984.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125945.0	NM_001357261	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	5.04465986321876	5.29905529278761	5.20352892978283	4.98132161823922	5.10411588004316	4.87956965157435	4.98723622594239	4.93700913654098	-0.274762979611646	0.382660764360459	0.684649487127997
Merged-chr2-181675648-4	chr2	181675552	181675752	+	897.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4012.0	NM_009236	20672.0	Mm.264904	NM_009236	ENSMUSG00000046470	Sox18	AI385749|Ra|Ragl	SRY (sex determining region Y)-box 18	protein-coding	4.68573218260159	4.67612974155784	4.03119570443297	4.45328298485166	4.12174179482672	4.46321153870803	4.40114000216175	4.37572079205401	-0.344098690051266	0.400515558759328	0.698297047011029
Merged-chr6-31216749-4	chr6	31216654	31216854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	CpG	1720.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	8.05146123538701	8.14796691346842	7.89944950969757	7.96713211850088	8.04677494390147	8.09874519420532	8.12715371935721	8.30164422541017	0.162008699476387	0.318791321707027	0.630680327073694
Merged-chr15-58822526-1	chr15	58822426	58822626	+	679.5	f0_balb.idr	intron (NM_175212, intron 1 of 6)	intron (NM_175212, intron 1 of 6)	901.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	3.28419530645845	3.48307076533475	3.3960193266077	3.29939487875979	3.14867196662178	3.39754028088232	3.02013191194157	3.39409285688175	-0.441360939141674	0.421588598433465	0.714023243341081
Merged-chr7-90035642-2	chr7	90035542	90035742	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	B3|SINE|B2	6483.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	2.90346242774179	3.40758434133605	2.75248893823737	2.91652733457605	3.36397988481983	3.21543851860779	3.20889160029343	3.37877798248191	1.04564510999526	0.0931368991537608	0.333867879097614
Merged-chr10-44997746-2	chr10	44997646	44997846	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69468.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	3.63103591463025	3.39812737442718	3.52914660854818	3.288223708555	3.67242582329467	3.64561118415586	3.34646678502908	3.35673722777869	0.205323665386986	0.690745609072766	0.874072563701163
Merged-chr11-97531908-4	chr11	97531804	97532004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_018873, exon 12 of 20)	exon (NM_018873, exon 12 of 20)	-31564.0	NM_001289118	100141474.0	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	5.2679353187155	5.7905164304403	5.20192987833761	5.28233724271764	5.33099794598728	5.62512883125302	5.63004723286577	5.47496986485692	0.18587475061314	0.538402513145996	0.7915779929063
Merged-chr16-13117428-3	chr16	13117325	13117525	+	881.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015769, intron 2 of 10)	intron (NM_015769, intron 2 of 10)	7689.0	NM_015769	50505.0	Mm.287837	NM_015769	ENSMUSG00000022545	Ercc4	AI606920|Xpf	excision repair cross-complementing rodent repair deficiency, complementation group 4	protein-coding	3.32867814575225	3.33205428959159	3.32906301493207	3.6962758148925	3.65212935227601	3.82918510518572	3.49296133198476	3.55871271319842	0.603506661511311	0.25189710982845	0.563121368733645
Merged-chr9-116139732-4	chr9	116139629	116139829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	35634.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	6.25520305614841	5.94154837773154	6.17817857732755	6.60328104478449	6.28389239096082	6.0636265135535	6.31509493133881	6.37776635376389	-0.0282016658784175	0.91240979852284	0.967207481621882
Merged-chr3-60618002-3	chr3	60617874	60618074	+	761.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 6 of 7)	MIRb|SINE|MIR	116795.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.0576977941789	4.38693413533452	3.8606811519185	3.66675332550324	3.73010968872963	4.1361866708124	3.8965744011335	3.96088559530741	-0.222415721766324	0.64209542988944	0.848998712583196
Merged-chr14-51941933-3	chr14	51941855	51942055	+	756.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-19182.0	NM_001011687	497071.0	Mm.378602	NM_001011687	ENSMUSG00000068392	Rnase13	-	ribonuclease, RNase A family, 13 (non-active)	protein-coding	3.69267182625186	3.65574346729542	3.94517798196471	3.49569076290973	2.98931598649974	3.30101425802553	3.17592146496041	3.18476443975717	-2.04203673601919	0.0004926930769527	0.00763041786867194
Merged-chr12-3763306-4	chr12	3763210	3763410	+	819.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027869, intron 16 of 20)	intron (NR_027869, intron 16 of 20)	-43670.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	4.19003288041281	4.14281103287466	4.04316053103623	4.44931544805264	4.23308796251878	4.1669315505036	4.26127361300462	4.43978932824523	0.10887647629645	0.789268144041985	0.918367862043131
Merged-chr1-34511206-4	chr1	34511105	34511305	+	929.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12793.0	NM_001360855	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	4.42997493503419	4.3273367886778	4.71068536573203	4.59466955269807	4.51419147432933	4.4673091946026	4.72320823317562	4.74287502320571	0.193805629509014	0.594100131570137	0.823300253342041
Merged-chr9-120028037-4	chr9	120027954	120028154	+	935.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4456.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	4.96390494166183	5.38758231001172	4.92865973351165	5.17927012743576	5.04709520717458	5.02924088935954	4.83060122747342	4.88832038970468	-0.349585169950084	0.279187331045847	0.591369431345506
Merged-chr11-109651020-4	chr11	109650959	109651159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021880, exon 1 of 11)	5' UTR (NM_021880, exon 1 of 11)	138.0	NM_001313976	19084.0	Mm.30039	NM_021880	ENSMUSG00000020612	Prkar1a	1300018C22Rik|RIalpha|Tse-1|Tse1	protein kinase, cAMP dependent regulatory, type I, alpha	protein-coding	6.58742293789896	6.67016768220035	7.21885491990829	6.61853757073395	6.79378261794781	6.81514283122672	6.80995804685628	7.08636561728461	0.124075075329052	0.593117150373915	0.822526612108404
Merged-chr16-58502732-1	chr16	58502632	58502832	+	572.5	f0_c57.idr	intron (NM_001357433, intron 2 of 10)	B1F|SINE|Alu	20694.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	3.25579192194713	3.21651680018812	3.61339035125915	3.22726486664165	3.54651259654733	3.62299469932785	3.78904075094561	3.93168297743374	1.29729929868942	0.0110589581228027	0.0847599418782137
Merged-chr19-16457305-2	chr19	16457205	16457405	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008137, intron 1 of 6)	intron (NM_008137, intron 1 of 6)	21638.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	3.06406604024318	3.34394135567422	3.06446478835741	2.88153547916938	3.18846859277947	2.84037208004704	2.79965851623716	2.94080705116426	-0.566621001930509	0.373255093550117	0.676907037218879
Merged-chr1-183657297-4	chr1	183657178	183657378	+	855.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91699.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	3.77450185650728	3.91410288601107	3.7749946351041	4.07976269206585	4.04561456361559	4.0062305367652	4.01623508618029	4.35896293369967	0.547806155926872	0.214702636053086	0.520621343994774
Merged-chr13-42258656-4	chr13	42258564	42258764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42812.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	7.11399603167319	7.31778472891826	7.26973786265875	7.01645001463675	7.23713301301156	7.23203683386142	7.03176322918933	6.94750387040505	-0.0765053707954729	0.695982736881282	0.877020062112254
Merged-chr10-99169982-4	chr10	99169886	99170086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	61851.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	7.680343015638	7.33986511188915	7.36680920146476	7.60130834079441	7.0402422350185	7.19081840877417	7.37876782638535	6.92621515901196	-0.49348462659361	0.0134419063674433	0.0972734295779023
Merged-chr6-28319813-4	chr6	28319704	28319904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58203.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	4.9243961136681	4.95854367579735	4.30572990626901	4.90154691025881	5.2448185616579	5.43351699872106	5.69261574045073	5.36881529291356	1.18079310321506	0.00062866482950011	0.00927008430231714
Merged-chr19-11970552-3	chr19	11970455	11970655	+	912.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033174, intron 1 of 13)	intron (NM_001033174, intron 1 of 13)	4711.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	3.60518078323445	3.7622547904282	3.75632392924298	3.66703462413006	3.22867717689027	3.42188427780997	3.78576556119235	3.4926493202212	-0.668928102300808	0.193041734148023	0.493163362103299
Merged-chr4-108383457-3	chr4	108383315	108383515	+	912.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001099303, exon 1 of 3)	5' UTR (NM_001099303, exon 1 of 3)	240.0	NM_001099303	545667.0	Mm.380025	NM_001099303	ENSMUSG00000059816	Fam159a	Shisal2a	family with sequence similarity 159, member A	protein-coding	3.34257636478526	2.95674262194238	3.23128189354504	3.31915790344584	3.16630087548302	3.51033993962349	3.16030682527997	3.16998325151302	0.119966115909432	0.832263757907186	0.935753947395642
Merged-chr7-67479458-4	chr7	67479424	67479624	+	866.160706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106666.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	3.60228898749038	3.42558247292264	3.70834038164962	3.7286895284448	3.66257013234306	3.71943888739607	3.69305550149436	3.75580651268234	0.240043797844132	0.610303655689081	0.831595076242652
Merged-chr3-36064729-4	chr3	36064616	36064816	+	984.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-1263.0	NM_172678	229211.0	Mm.260997	NM_172678	ENSMUSG00000027710	Acad9	2600017P15Rik|4732402K02|C630012L17Rik|NPD002	acyl-Coenzyme A dehydrogenase family, member 9	protein-coding	4.75695476438222	5.19441671538985	4.83585423774907	4.61121520795665	4.96619546772789	5.11779033570663	5.05186089257423	4.86996557903866	0.287021606731665	0.398791004954219	0.696906489172387
Merged-chr10-41476424-4	chr10	41476315	41476515	+	971.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164433, exon 1 of 23)	5' UTR (NM_001164433, exon 1 of 23)	101.0	NM_138315	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	5.08077525031528	4.96068482773371	5.22911136861069	4.99353630649138	4.73475674729028	4.57947945077933	4.85500525199481	5.04647064890135	-0.498661053501087	0.13234228403314	0.405086777303013
Merged-chr14-63130828-4	chr14	63130717	63130917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	8355.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	6.75212362509509	6.85053728333921	6.8658643969844	7.06308468846307	6.83193934348532	6.91522587883091	6.80396777674835	6.71874405210179	-0.11517962248811	0.564987988188141	0.807179158027451
Merged-chr3-136703076-4	chr3	136702977	136703177	+	964.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	33011.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	4.7846262053929	4.96599906498697	4.97704689379976	5.14412376225188	5.43488263059863	4.83632079125579	5.36998313902288	4.93762546288009	0.37341784322122	0.270974491631658	0.58272879364506
Merged-chr6-72037742-4	chr6	72037612	72037812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046180, intron 1 of 2)	intron (NR_046180, intron 1 of 2)	4816.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	7.66401957818151	7.84991431056555	8.01302553633375	7.81829222247013	7.54402333433233	7.40837725293686	7.53265021030755	7.47111910802367	-0.457972501250134	0.00794731758277125	0.0669129546042199
Merged-chr2-143975452-4	chr2	143975378	143975578	+	964.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 2 of 23)	intron (NM_024281, intron 2 of 23)	35785.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	5.02951137321016	4.48028938826387	5.64119902166542	5.54404602760446	4.79190867866714	4.62362416900671	4.89968654868696	5.18713895142371	-0.694294597884782	0.090553114995509	0.328700095479899
Merged-chr3-121292057-4	chr3	121291944	121292144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155539, intron 1 of 2)	CpG	304.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	7.84792565909526	7.62707879919803	7.41871792486113	7.96507352852522	7.86665715498806	8.00420818026424	8.14714249250541	7.81384828589996	0.28769439159366	0.13780198150311	0.412907061309612
Merged-chr2-150845871-3	chr2	150845742	150845942	+	847.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 4 of 12)	intron (NR_151505, intron 4 of 12)	-3272.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	3.05759230815336	2.99408892796057	3.16509777967166	2.85441890490401	2.88564013811656	2.77532126109324	2.80390898234765	2.93957315288459	-0.714284504283998	0.24711917259046	0.558168726560377
Merged-chr6-131290630-4	chr6	131290533	131290733	+	888.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025564, intron 1 of 4)	B2_Mm2|SINE|B2	2611.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	4.09809625867709	4.3076783156769	3.98818742465403	4.0000816173589	4.53272113327722	4.27905388303435	4.95799904909332	4.54131289320904	1.17636669477488	0.00353677558141143	0.036347696954849
Merged-chr4-155821209-3	chr4	155821096	155821296	+	711.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207678, intron 8 of 10)	B2_Mm1a|SINE|B2	8707.0	NM_207678	56036.0	Mm.23492	NM_018856	ENSMUSG00000029068	Ccnl2	1700010A01Rik|1810019L15Rik|2010319M22Rik|AA409936|AW261738|Ania-6b|HCLA-150|Pcee|SB138	cyclin L2	protein-coding	3.19035259684571	3.33028462897795	3.05936595376684	2.69768884679176	3.61879323293561	3.36736837587611	3.5051440680888	3.30858377335173	1.38800098611738	0.0210132087501613	0.132406582852884
Merged-chr11-100369173-3	chr11	100369062	100369262	+	875.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010593, exon 14 of 14)	3' UTR (NM_010593, exon 14 of 14)	-13021.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	3.57470313031798	3.62790027586024	3.45964082357931	3.42347855200289	3.98085358098737	3.5749244090087	3.66604434646586	3.67915945103476	0.70844634546624	0.141078021170849	0.417798729724146
Merged-chr9-98958003-4	chr9	98957904	98958104	+	740.670837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_012020, exon 1 of 1)	3' UTR (NM_012020, exon 1 of 1)	2397.0	NM_012020	26927.0	Mm.151239	NM_012020	ENSMUSG00000050397	Foxl2	AU045128|BPES|PINTO|Pfrk	forkhead box L2	protein-coding	4.10176880628181	4.42327556905152	3.94099366930535	3.98305737299062	4.39040356981429	4.37397559068472	4.64363973664492	4.19741133451487	0.702405701215429	0.0875643131288091	0.322639002184259
Merged-chr8-10145232-2	chr8	10145132	10145332	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8679.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	3.17787715720329	3.32927493588641	3.17823926931464	3.62444153025315	3.16334484705172	3.46867381203561	3.39592012472681	3.23848297214586	-0.136227718837127	0.809282848295264	0.926376505400415
Merged-chr7-16326400-4	chr7	16326301	16326501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019748)	TTS (NM_019748)	16818.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	5.60140895421886	6.59488546855689	5.77358998788736	5.78327870013629	6.02345057541185	6.6794277560408	6.18850357578557	6.1583313745935	0.42789435077269	0.179942362700149	0.476262128979061
Merged-chr4-151996622-1	chr4	151996522	151996722	+	1000.0	f0_c57.idr	promoter-TSS (NM_172705)	promoter-TSS (NM_172705)	-443.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	7.91035184362477	7.69955601750486	7.75481372593298	7.51876246567937	7.73644780620163	7.89182423721352	7.78655710394702	8.06431849421818	0.200430141185065	0.268427296172505	0.580131084080006
Merged-chr6-148561282-4	chr6	148561177	148561377	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53032.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	5.44176347401227	5.37009467895339	5.86486304587792	5.7924931997594	5.4729975841096	5.17218785623464	5.60543501039277	5.77344239976099	-0.198606005074602	0.508899754099312	0.773827521189954
Merged-chr17-51044059-3	chr17	51043956	51044156	+	921.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 2 of 21)	intron (NM_028162, intron 2 of 21)	115322.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	3.92360951648633	3.87482604216482	3.92414359625248	4.6417268973451	4.46882190962238	3.87006510468363	4.19784363650287	4.21411905083009	0.135763327428546	0.785134298274372	0.916419176427004
Merged-chr2-5697437-4	chr2	5697343	5697543	+	896.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	17319.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	4.82589827887352	4.54606549674778	4.6577231205182	4.86290559933782	4.23591410546783	4.19896413302062	4.48305831482086	3.9516226642541	-1.1666010757836	0.00323516622607199	0.0338591231885867
Merged-chr10-125371623-4	chr10	125371509	125371709	+	917.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42646.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	3.83887003602536	3.93436019345503	4.09843797490164	4.48743115510536	3.98039793839589	4.31523670780086	4.33239956187161	3.77895221790871	-0.0305334214746761	0.948987964622616	0.981673120801678
Merged-chr12-36032641-3	chr12	36032567	36032767	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	9811.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	4.78621471619857	4.40504397673252	4.72317335483574	5.25924628314278	3.63166710869534	3.94015820989185	3.7308112754976	3.67337227588405	-2.96112924191798	2.89129748402419e-09	1.70646487243248e-07
Merged-chr15-103250319-4	chr15	103250208	103250408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302338, intron 2 of 2)	intron (NM_001302338, intron 2 of 2)	1368.0	NM_001302338	18022.0	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	5.69271159426556	5.97360846919759	5.6125741575174	5.85191318451793	5.98774078270692	5.86965329852335	6.00508106665775	5.60864493092775	0.135526826693315	0.603609451148372	0.828211834437697
Merged-chr1-180768590-4	chr1	180768495	180768695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42552.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	6.08131718387163	5.79431812171787	6.16090239589659	6.08698322480322	5.9056323208241	6.19489881719762	5.75783710787699	5.97254685462328	-0.1201480525949	0.631810279340653	0.843565602967326
Merged-chr13-62015927-3	chr13	62015806	62016006	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113984.0	NM_001039239	630579.0	Mm.440905	NM_001039239	ENSMUSG00000074867	Zfp808	EG630579|Gm7036	zinc finger protein 808	protein-coding	3.35653509700522	3.23951308647927	3.35696050598439	2.44491188289752	5.19172795229009	4.81954987272655	5.30003149831501	5.1424539413156	8.91645369067408	2.28505664621782e-21	9.13753073152461e-19
Merged-chr4-116150445-6	chr4	116150352	116150552	+	999.9722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290658)	promoter-TSS (NM_001290658)	-66.0	NM_029786	68273.0	Mm.196045	NM_026651	ENSMUSG00000028700	Pomgnt1	0610016I07Rik|4930467B06Rik	protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase	protein-coding	5.12177702134662	5.29631540720349	5.19012630733264	5.00891153827521	5.29171053973635	5.19326014449153	5.90561571355718	5.25059842963664	0.528181263763421	0.100561511888781	0.348111460691156
Merged-chr13-98890484-4	chr13	98890360	98890560	+	835.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 2 of 23)	intron (NM_178716, intron 2 of 23)	582.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	4.47495273034131	4.79352788550591	4.67545006112503	4.92014825580332	4.3118507834113	4.60658589967667	4.45550281023865	4.28752894753511	-0.72778378831331	0.0511763378798688	0.234754176319597
Merged-chr8-111526785-4	chr8	111526672	111526872	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4665.0	NM_176923	319481.0	Mm.247294	NM_176923	ENSMUSG00000031959	Wdr59	5430401O09Rik|Cdw12	WD repeat domain 59	protein-coding	4.83535441004415	5.53332969877823	5.39764164942281	5.12268094066923	6.01394711581582	5.63384891492273	5.96305986785441	5.73847086196691	1.03319140548969	0.000572559792274801	0.0086075643502291
Merged-chr4-134853409-4	chr4	134853284	134853484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355501)	promoter-TSS (NM_001355501)	-39.0	NM_025382	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	7.92437425236573	8.08434327086571	7.76099348414329	7.55729681018929	8.0407593799231	8.06758744514275	7.54334455720743	7.85560929787186	0.0705373151591588	0.729005758701913	0.8923917123608
Merged-chr5-130144747-4	chr5	130144619	130144819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172509)	promoter-TSS (NM_172509)	-169.0	NM_172509	212919.0	Mm.55812	NM_172509	ENSMUSG00000034110	Kctd7	4932409E18|9430010P06Rik	potassium channel tetramerisation domain containing 7	protein-coding	8.51948580876967	8.55009276051535	8.86268371449432	8.60989974306892	8.72129700727645	8.69859930655215	9.02466834102977	8.69144627682283	0.187952618232679	0.256928417598852	0.568647554151895
Merged-chr6-120457309-3	chr6	120457217	120457417	+	859.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-5880.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	3.54996263556746	3.52541476610849	3.550424397597	3.40108244121531	3.88868331469687	3.88468457452568	3.69868443858984	3.85700491044657	1.04226160883169	0.02300840801749	0.140443827654311
Merged-chr1-66701288-2	chr1	66701188	66701388	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025683, intron 1 of 5)	CpG	457.0	NM_001310644	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	4.15628113778574	3.85522135143829	4.60342607020959	4.47356335357223	4.17585539635422	4.33150662052329	4.1391280578978	4.37671684425529	-0.127516150484843	0.768563924829279	0.909395764436187
Merged-chr14-55746641-5	chr14	55746541	55746741	+	857.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026819)	promoter-TSS (NM_026819)	948.0	NM_026403	67842.0	Mm.180338	NM_026403	ENSMUSG00000019297	Nop9	2610027L16Rik	NOP9 nucleolar protein	protein-coding	3.19599519071584	3.60153504758863	3.36740646256683	3.37153583662523	2.97424054800754	3.10905514415338	3.24379361684146	3.2542436020242	-0.947415268110676	0.0948189983110733	0.336900188727794
Merged-chr8-11555974-4	chr8	11555871	11556071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011919)	promoter-TSS (NM_011919)	-92.0	NM_001302457	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	8.73972604211298	8.99362004064359	8.95476611355992	8.70341280524706	9.01771517320538	9.08081078247574	9.21925554162651	8.86652481893696	0.249103786343598	0.118240363166352	0.380377420673314
Merged-chr9-55308697-4	chr9	55308612	55308812	+	993.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18201.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	5.86129772986409	5.50368422872342	5.66318956648802	5.83519572567026	5.15946900648325	5.27818747156251	5.27846776955427	5.09454349682548	-0.928264531280364	0.00107125150475296	0.014215251837586
Merged-chr13-52618758-4	chr13	52618662	52618862	+	844.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 3 of 13)	intron (NM_011518, intron 3 of 13)	21880.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	4.27813097508043	3.82020352033266	4.01853517335525	4.11072494517325	4.12030166214976	3.87103415916725	3.79647570189089	4.35051188577483	-0.0266818334344915	0.952827113120063	0.983276598943455
Merged-chr11-22666153-4	chr11	22666022	22666222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153839.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	8.31200614778707	8.38142572865262	8.32436265111914	8.05770843550394	8.42181049173453	8.48556618671142	8.39023393963234	8.05102556799866	0.101441506499257	0.561752148144693	0.805141882179354
Merged-chr17-26437510-5	chr17	26437370	26437570	+	951.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081656, intron 2 of 4)	intron (NM_001081656, intron 2 of 4)	22505.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	2.98768081455569	3.30842687377502	3.64260403871405	2.91766236068055	3.49152104334238	3.38023438282389	3.37045481404651	3.77316433014046	0.93747683838115	0.1153468475915	0.375739017194426
Merged-chr17-84790824-4	chr17	84790684	84790884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028233)	promoter-TSS (NM_028233)	2.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	7.44334439851709	7.78831987808846	7.736107051018	7.4769495039945	7.71522128845678	7.89745833694231	7.56591349239311	7.60673440327887	0.112800808260501	0.542385818649511	0.793816675281769
Merged-chr8-79391656-1	chr8	79391556	79391756	+	724.0	f0_balb.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	7812.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	3.59883160491768	3.31592678722206	3.74042688195213	3.76777888535897	3.04315447633933	3.43796937229652	3.04352377882176	3.54653068979155	-1.18066374750484	0.0439392400558995	0.213637485571907
Merged-chr2-160084934-4	chr2	160084847	160085047	+	956.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68294.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	5.60351774407905	5.29508507260214	5.45714076255541	5.61278191796908	5.28358594134769	4.83307531297262	4.96519383029086	4.78282815012959	-0.927136444793769	0.00407791745370739	0.0406643438550628
Merged-chr11-75460188-4	chr11	75460072	75460272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1367.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	5.27957457370675	5.39515784354927	5.51199869852024	5.43960245738427	5.15656844908924	5.51699285039062	5.43061794648011	5.50811903630674	-0.0212086104173375	0.940651136261445	0.978654793543509
Merged-chr12-102283100-4	chr12	102282929	102283129	+	997.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161365)	promoter-TSS (NM_001161365)	-45.0	NM_177620	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	5.08214001735462	4.90758398468613	5.28551533921891	5.23018523907846	4.92106342921816	5.05356985873158	4.57067254557946	4.44306274974859	-0.719109007123001	0.0420351229961953	0.207729651536718
Merged-chr15-67039615-4	chr15	67039559	67039759	+	974.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70018.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	5.60826817398968	5.79883582874593	6.12506009068228	5.75572116224777	5.00838783443478	5.18298639619309	5.19859357367447	5.35170164529454	-1.13466047345559	0.000106014066520373	0.00213283641629554
Merged-chr6-8505066-4	chr6	8504961	8505161	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	4100.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	4.80122911964712	4.75995555562574	4.91426518457023	5.20613542051927	4.98677686372195	4.35523070904285	5.14676986037344	5.30687292651919	0.102893595319894	0.788657237678243	0.91812687233996
Merged-chr17-65853874-4	chr17	65853784	65853984	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198949, intron 7 of 9)	intron (NM_001198949, intron 7 of 9)	31039.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	4.40877393877305	4.54666595626364	4.61558871133565	5.02084388197505	4.36439705200953	4.34478231776527	4.5556489631262	4.3612778847697	-0.634213822807912	0.105045255657018	0.356438778300563
Merged-chr7-43466548-4	chr7	43466468	43466668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290316, exon 5 of 10)	exon (NM_001290316, exon 5 of 10)	3335.0	NM_001290316	75690.0	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	6.07139084550936	5.85650075809933	5.51182907687951	5.69670607573923	6.01209959399815	6.07882956004112	6.02160021556116	5.6794809441948	0.263937774301871	0.321651149626188	0.633233286881578
Merged-chr10-37136556-2	chr10	37136456	37136656	+	983.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008538, exon 2 of 2)	exon (NM_008538, exon 2 of 2)	2370.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	3.60011241151227	3.65260702066687	3.80560980644411	3.49883499632653	3.63356751044313	3.82635345784234	3.41085778839291	3.84968211616331	0.165523432826829	0.733708301606301	0.894624900644699
Merged-chr19-29442638-4	chr19	29442533	29442733	+	925.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 3 of 5)	intron (NM_021396, intron 3 of 5)	31714.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	4.86766262160896	4.37776861688737	4.83491564114435	4.79904332452177	4.89997238214285	4.82508919561219	4.32437596312752	4.34026747069343	-0.213827174606771	0.587479354860603	0.819234625700348
Merged-chr6-42265619-4	chr6	42265508	42265708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007610, intron 1 of 10)	intron (NM_007610, intron 1 of 10)	623.0	NM_007610	12366.0	Mm.3921	NM_007610	ENSMUSG00000029863	Casp2	CASP-2|ICH-1|NEDD-2|Nedd2	caspase 2	protein-coding	6.50613493954369	6.41633708910364	6.3483946291459	6.81998848229216	6.44633860903165	6.68316404423538	6.4235160342152	6.50263709388688	-0.0597359177551486	0.79532312653214	0.920823289538254
Merged-chr12-112631658-4	chr12	112631531	112631731	+	957.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 2 of 12)	intron (NM_007421, intron 2 of 12)	11584.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	4.4690378711105	4.65476456189163	4.34203057722836	4.41465299446353	4.39338148224557	4.42422487106138	4.18271658199095	4.4257713353833	-0.263630009419458	0.484103439393196	0.758268571893763
Merged-chr7-6169654-4	chr7	6169581	6169781	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER91A|DNA|hAT-Tip100	-2832.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	5.5165808540363	5.20748690439275	6.00618100351891	5.84400892758789	4.97870997478369	5.28521048556266	5.34700461904325	5.61781944287748	-0.630492139015391	0.0569519238812515	0.2500635981706
Merged-chr6-124857153-4	chr6	124857064	124857264	+	979.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013534, intron 1 of 14)	CpG	523.0	NM_013534	14789.0	Mm.35708	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	5.2798656315129	5.21273496939931	4.70377466855939	5.1005560487412	5.3172810034521	5.30034230143886	5.16497710197786	5.12312313877349	0.255874776172531	0.414543018510396	0.709109550708983
Merged-chr16-36602857-3	chr16	36602759	36602959	+	742.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40725.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	3.24001738973904	3.2088368927612	3.31070858602465	3.35543489330844	4.29704818246395	3.68154235927623	3.934224110126	3.81739901776414	2.09185770966931	6.67810672471288e-05	0.00144480534516212
Merged-chr16-21692956-4	chr16	21692834	21693034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	RSINE1|SINE|B4	1731.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	6.94326507259698	6.96985480518734	6.27221308319522	6.37287569907731	6.98016970590461	6.88132779737974	6.37619015594823	6.38578291003879	0.024831458848529	0.928504347730016	0.974017522689856
Merged-chr7-126703653-3	chr7	126703589	126703789	+	752.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009898, intron 1 of 10)	intron (NM_009898, intron 1 of 10)	531.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	3.12548877950577	3.1616598580284	3.3405426011624	2.91131755039744	3.24666843854549	3.04618969469526	3.05519345608752	2.86732302300059	-0.27558034029835	0.647176419669115	0.851605116430591
Merged-chr1-154090026-3	chr1	154089928	154090128	+	804.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-111159.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	3.80785205386956	3.47425617356801	3.65793707058647	3.57124170427243	3.51852991146411	3.82920902821503	3.74415869609596	3.70793661165771	0.220582612815817	0.642952934169309	0.849459897971419
Merged-chr15-78623617-4	chr15	78623513	78623713	+	813.608337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26566.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	3.92788987732731	3.82089488978642	3.82142625829158	3.57711039718521	4.2928953249899	3.82657728855039	4.22569531042327	4.39378538949295	1.15357747813041	0.00897567671842552	0.0730315149909477
Merged-chr15-58343346-3	chr15	58343242	58343442	+	890.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027211, intron 8 of 8)	intron (NM_027211, intron 8 of 8)	-19173.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	3.58271143347988	3.45008927768484	3.73399825792681	3.40932464470835	3.56784618751657	3.39872492638883	3.45887726807186	3.86608789550945	0.145255362683324	0.77408283505393	0.911716359199097
Merged-chr2-113820269-4	chr2	113820199	113820399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009162, intron 2 of 5)	intron (NM_009162, intron 2 of 5)	8792.0	NM_009162	20394.0	Mm.4836	NM_009162	ENSMUSG00000023236	Scg5	7B2|AI325031|Sgne-1|Sgne1	secretogranin V	protein-coding	7.63950872431289	7.39851336621802	8.03286386383527	8.11337470597661	7.71679030783204	7.37598886775574	7.77322673536412	8.11921120768207	-0.0778029998261599	0.74031379680376	0.897803754156284
Merged-chr11-69063011-4	chr11	69062799	69062999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3124.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	5.42323519035178	5.5836178609199	5.30833516107389	5.2769033551889	5.17585797339902	5.4211669688249	5.01533742417628	5.44771282266959	-0.22848764137159	0.444354187608904	0.730774412852539
Merged-chr10-75060438-4	chr10	75060363	75060563	+	986.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081412)	promoter-TSS (NM_001081412)	-433.0	NM_001081412	110279.0	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	5.18056551241658	5.61145289554321	5.81775318301925	5.85788668669469	5.19467678040989	4.64408451209357	5.01738411657661	4.79701574847224	-1.29090956952348	0.000182644608633278	0.00337061462222144
Merged-chr9-77961547-4	chr9	77961499	77961699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 3 of 7)	intron (NM_134255, intron 3 of 7)	44234.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	7.27569061060564	7.27675562135207	7.54187771948639	7.44976568441166	7.29523894006997	7.04778578917673	7.17593238011012	6.92165591701876	-0.361846539888259	0.0612667854558918	0.261910746440246
Merged-chr13-42829719-4	chr13	42829615	42829815	+	770.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005740, intron 1 of 12)	intron (NM_001005740, intron 1 of 12)	-36532.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	3.46810426971638	3.53795072405103	3.73278256100047	3.11258752698889	3.74598856339169	3.64339476219288	3.56622072508898	3.63135408435955	0.588930335811891	0.259296127819376	0.571141546713766
Merged-chr17-81572984-3	chr17	81572887	81573087	+	948.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	RMER19B2|LTR|ERVK	165400.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	3.72727841711458	3.26727187858918	3.33165615765033	3.66881100769073	3.15656886713934	3.18644529842122	3.31924596848715	3.27059895402642	-1.03743938120421	0.0614887769933564	0.262392665324347
Merged-chr16-25024819-4	chr16	25024711	25024911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-34828.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	5.90632571164784	5.70706054945493	5.37337149009128	5.58475683588303	6.04854372805661	6.01447536906656	5.98095659630726	5.49560510056535	0.41623543018062	0.137490586471591	0.412460170036726
Merged-chr5-8944083-4	chr5	8943967	8944167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008830, intron 21 of 27)	MIR|SINE|MIR	50346.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	5.97299571395641	6.21031432716214	6.29497975506154	6.59951084813846	6.64042680163526	6.22332495247879	6.59160488127599	6.36385844359878	0.243062426773204	0.337156365275766	0.646963199546119
Merged-chr2-166261989-4	chr2	166261860	166262060	+	941.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11948.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	4.39352076579651	4.21322472260491	4.74665819227816	4.95441246233815	4.25283928558573	4.10001993721012	4.72349157904705	4.63660882142611	-0.377087182300155	0.386189098097619	0.687523230791116
Merged-chr14-10139535-4	chr14	10139466	10139666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	255471.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	6.78473990986093	6.81605598678859	7.04695483233955	7.07169492874538	6.92548428673127	6.77615075882103	6.82170232394694	7.03019767247317	-0.0700215364742888	0.727706903238809	0.891608883059343
Merged-chr6-70881120-4	chr6	70881033	70881233	+	928.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010121, intron 4 of 16)	intron (NM_010121, intron 4 of 16)	36618.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	4.49939976126049	4.84930842486724	4.19002704849517	4.9512493497041	5.15182623035588	4.84761907174037	4.90448239068671	4.74816207135257	0.513110336297099	0.190481334000638	0.489731319658269
Merged-chr1-153492730-3	chr1	153492650	153492850	+	607.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5090.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	3.66893073218831	3.11409166770524	3.33901083914678	3.29969231143118	2.98236946628835	3.14753880519891	3.02704141915048	3.22452207515678	-1.04941206693653	0.0731615388737375	0.291121348461603
Merged-chr4-6452633-4	chr4	6452524	6452724	+	877.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	1647.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	3.86440494529266	3.42901130348163	3.86498572105618	3.79759162343802	3.71615402995973	3.83410237344205	3.64704371297915	3.81474768963097	0.00724291461721065	0.987772064888431	0.995348878917337
Merged-chr12-44176553-3	chr12	44176467	44176667	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33501.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	3.8617900039653	3.83993902133275	3.93296498215825	3.5848423757815	5.19041749121644	5.36502017765411	5.89797224052665	5.36692368995913	3.71429603907818	5.45404747103141e-20	1.82408774676039e-17
Merged-chr16-16870781-4	chr16	16870651	16870851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011624)	promoter-TSS (NM_011624)	15.0	NM_011624	21976.0	Mm.326089	NM_011624	ENSMUSG00000022779	Top3b	-	topoisomerase (DNA) III beta	protein-coding	6.81796367718471	6.73766299620141	6.83287021614609	6.4821172442972	7.06945987200927	6.8188297796371	6.97507973156807	6.55512673844067	0.232598265898172	0.294530776783885	0.606705576837552
Merged-chr10-127165143-4	chr10	127165034	127165234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008080)	promoter-TSS (NM_008080)	-22.0	NR_045166	14421.0	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	4.55857707951488	5.25924221514193	5.31995797713963	4.81375555924155	5.45974836214615	4.92231182449963	5.14981671921186	4.97375679076089	0.25631736465934	0.482837094491706	0.757421686487144
Merged-chr9-94708468-4	chr9	94708368	94708568	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	38576.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	5.30715479084066	5.09233580256019	5.421153145359	5.26070263930167	4.97977015796503	5.61660288569506	5.28170428125844	5.18018464480694	0.00265672459602648	0.993238399468793	0.99761124410218
Merged-chr8-70131698-4	chr8	70131580	70131780	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011266, exon 9 of 9)	3' UTR (NM_011266, exon 9 of 9)	353.0	NM_001025587	75692.0	Mm.161167	NM_001025586	ENSMUSG00000071078	Nr2c2ap	2310073E15Rik	nuclear receptor 2C2-associated protein	protein-coding	4.47692121657131	4.33368407575298	4.69296054222099	4.24370271003654	5.19034743907414	4.94421992678536	5.07192183724758	4.90810865418421	1.28506661829717	0.000186969366800782	0.00343883528669583
Merged-chr5-135773272-3	chr5	135773165	135773365	+	794.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029659, intron 1 of 8)	intron (NM_029659, intron 1 of 8)	5036.0	NM_001289554	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	3.22076564778205	3.24249944645411	3.10599472946058	3.38797020860501	3.04022056636919	3.1526096059342	3.03434501781944	2.97827096211876	-0.805090901020541	0.15876535481854	0.445912448827244
Merged-chr5-30073549-3	chr5	30073443	30073643	+	926.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033402)	promoter-TSS (NR_033402)	82.0	NR_033402	22171.0	Mm.268395	NM_021288	ENSMUSG00000025747	Tyms	Ts	thymidylate synthase	protein-coding	3.52446041929077	3.19216957490003	3.47079353618024	3.67354058160351	3.39817751941619	3.64074635529743	3.40159902260533	3.52296971746472	0.0133836794680144	0.979623507432505	0.99269129061727
Merged-chr6-31221720-4	chr6	31221627	31221827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040260, intron 1 of 5)	intron (NR_040260, intron 1 of 5)	1376.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	5.51477191393436	5.92903013798787	5.36681955830928	5.77425082160797	5.6021157545236	5.54397692996433	5.37131387090606	5.67004367515559	-0.209054453344706	0.46273478739857	0.744218307499404
Merged-chr6-83326138-4	chr6	83326101	83326301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145571, exon 1 of 6)	5' UTR (NM_145571, exon 1 of 6)	162.0	NM_145571	232157.0	Mm.29500	NM_145571	ENSMUSG00000043131	Mob1a	4022402H07Rik|MOB1|MOB4B|Mobk1b|Mobkl1b	MOB kinase activator 1A	protein-coding	6.9918236822981	7.00146201460407	7.56117736149238	6.8133174023092	6.50498920301713	6.68653070601883	6.28218176658924	6.92556973976025	-0.700030752862616	0.00628875526290814	0.0561564663744157
Merged-chr5-36814725-4	chr5	36814626	36814826	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008550, intron 11 of 18)	intron (NM_008550, intron 11 of 18)	15923.0	NM_008550	17160.0	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	5.24332572622964	5.56990259809078	4.96764397834341	5.32004413741124	5.37821748123233	5.35514831120488	4.98183506894516	5.27128945907887	-0.0716834072330547	0.819279339525355	0.930769222672103
Merged-chr13-92939262-3	chr13	92939165	92939365	+	985.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94478.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	3.36856065924618	3.39456864174692	3.52065216380612	2.82134913372686	4.79277015188032	4.88565378361112	4.30731497425572	4.51537538531138	4.2734978873316	1.08317349552022e-15	1.93716598587019e-13
Merged-chr10-80016584-4	chr10	80016464	80016664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142701)	promoter-TSS (NM_001142701)	-108.0	NM_001142701	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	6.99568324434087	6.64588166802867	6.55043325819182	6.95515507712619	6.54545173885984	6.65910065557247	6.92595766028158	6.34670807510317	-0.246813409517481	0.292138524850669	0.604533187788056
Merged-chr15-39817206-4	chr15	39817122	39817322	+	981.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164466, intron 7 of 9)	intron (NM_001164466, intron 7 of 9)	20177.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	5.06944072671855	4.74852276324818	5.07030091584005	4.78963469430005	5.03677943724271	5.03656157559263	5.22304176167439	4.8199244345837	0.241489565681763	0.457914047944048	0.740904346667789
Merged-chr11-54251722-2	chr11	54251622	54251822	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1823.0	NM_009969	12981.0	Mm.4922	NM_009969	ENSMUSG00000018916	Csf2	CSF|Csfgm|GMCSF|Gm-CSf|MGI-IGM	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding	3.53049549679353	3.39115476689541	3.89614237648507	3.11643078369053	2.96977095211432	3.28442609212096	3.40702859457389	3.67817918733358	-0.51272149204269	0.401240449545548	0.698895556405952
Merged-chr12-78859025-4	chr12	78858908	78859108	+	770.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023721, intron 1 of 8)	(A)n|Simple_repeat|Simple_repeat	2630.0	NM_023721	73834.0	Mm.311549	NM_023721	ENSMUSG00000021114	Atp6v1d	1110004P10Rik|Atp6m|VATD|Vma8	ATPase, H+ transporting, lysosomal V1 subunit D	protein-coding	3.9498566658131	3.66455639812582	3.65762206066929	3.90244951373882	3.71259691760616	3.53209846800128	3.64350994513769	3.85785570444237	-0.33577393624143	0.477242344390017	0.753399593177778
Merged-chr18-74213962-3	chr18	74213856	74214056	+	919.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-2256.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	3.21933418091942	3.58191228782121	3.4717072192689	3.82474658482436	3.61999150048379	3.69769527201221	3.45889482967147	3.57967796039778	0.103534705183159	0.845291043606705	0.941471757098182
Merged-chr12-25054751-3	chr12	25054629	25054829	+	929.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081378, intron 31 of 31)	intron (NM_001081378, intron 31 of 31)	41363.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	3.20184017190415	3.10324742442804	3.36523422952997	2.77794731276539	4.98462227875319	4.27381480167365	4.87925871654027	4.1336926315267	4.94708573965969	1.62634638254677e-16	3.32648589549702e-14
Merged-chr12-87488928-4	chr12	87488840	87489040	+	970.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-16641.0	NM_025507	66354.0	Mm.271174	NM_025507	ENSMUSG00000021039	Snw1	2310008B08Rik|AW048543|NCoA-62|SKIP|Skiip	SNW domain containing 1	protein-coding	5.04925197740901	5.06829978412665	4.71317349646182	4.78139138760162	5.23561233050651	5.15597036063007	5.14960527146533	4.8323394283179	0.393965713612904	0.224839328508041	0.533284902067823
Merged-chr3-13473124-4	chr3	13473041	13473241	+	866.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357036, exon 1 of 9)	5' UTR (NM_001357036, exon 1 of 9)	342.0	NM_001357036	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	4.23053525277857	3.88492419002863	4.77884923981399	4.28185619935247	3.770051740095	3.76755973930744	3.87331566879314	4.13964096286689	-1.14025508512755	0.0171932545909176	0.115528997312086
Merged-chr1-185364192-1	chr1	185364092	185364292	+	740.75	f0_balb.idr	intron (NM_001357474, intron 1 of 32)	intron (NM_001357474, intron 1 of 32)	1148.0	NM_001357474	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	3.63620096448671	3.49494583235932	3.58356203771584	3.82789537567412	3.11725846981446	3.39598648490406	3.26947554483514	4.14144916053846	-0.28839442161134	0.632277892534307	0.843799837121258
Merged-chr8-120103053-4	chr8	120102927	120103127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1555.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	6.50040792193161	6.70443302268925	6.97554224586533	7.11230868839603	6.75588659275807	6.69621425195151	6.55227600779534	6.38774510832652	-0.352269018515069	0.13360260421987	0.406961207171022
Merged-chr3-142618866-4	chr3	142618759	142618959	+	948.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010259, exon 11 of 11)	3' UTR (NM_010259, exon 11 of 11)	-1804.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	4.90486192849377	5.0795639197842	4.86895844415472	4.22620590659774	5.14702152307257	5.44960849450022	4.76944116837104	4.90235394433948	0.580747452965546	0.138085641069101	0.413451207879521
Merged-chr2-116999858-4	chr2	116999748	116999948	+	712.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	99696.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	3.63749978903425	3.97211687952871	4.03396526601608	3.46375590480344	3.99065732532361	3.63422638271258	3.88239696769889	3.74681309681992	0.109826198453404	0.823911509565458	0.932474676260251
Merged-chr3-15160075-3	chr3	15159974	15160174	+	693.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	172228.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	3.20614573687086	2.98975852216192	3.25857468961431	3.3046635283088	2.94057691914539	2.8736897825997	2.90028862996923	2.9729330199454	-1.17527548955258	0.0511122516833382	0.234638017733481
Merged-chr4-148155225-2	chr4	148155125	148155325	+	856.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355701, intron 5 of 5)	intron (NM_001355701, intron 5 of 5)	-3090.0	NM_001163707	50762.0	Mm.27445	NM_015797	ENSMUSG00000055401	Fbxo6	AA408845|FBG2|Fbs2|Fbx6b|Fbxo6b	F-box protein 6	protein-coding	2.31822349663305	2.39429842486886	2.60162753670232	2.19302451679077	2.4531455645141	2.71057589991498	2.76785765903616	2.66246709136821	1.50599675174342	0.0366987968062335	0.190726026421648
Merged-chr11-85942071-2	chr11	85941971	85942171	+	718.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45306.0	NM_172798	21387.0	Mm.275336	NM_011536	ENSMUSG00000000094	Tbx4	3930401C23	T-box 4	protein-coding	2.76247993586575	2.74165837798164	2.64852835744189	2.37556777497374	2.27620818597802	2.41245187690369	2.37746121545997	2.38316138229353	-1.63364554570823	0.0336923719207369	0.180879551788815
Merged-chr18-82462181-4	chr18	82462073	82462273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAG)n|Simple_repeat|Simple_repeat	-12950.0	NM_001025245	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	6.02349310565913	6.30502283150228	5.53773247185644	5.5320089708137	5.84378341759348	6.13494414523169	5.72499273795575	5.67265724762414	-0.0519725514265532	0.865706677335321	0.949726204279319
Merged-chr4-35068337-3	chr4	35068217	35068417	+	834.311096	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 2 of 3)	intron (NM_178061, intron 2 of 3)	-83738.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	4.33562498361644	4.00394193694361	4.14573709394957	3.93073585686578	3.62939659002994	3.57070468285686	3.74881525501906	3.81589186782976	-1.19354951312286	0.0108691586422816	0.0838106210593609
Merged-chr9-96675637-4	chr9	96675543	96675743	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43802.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	4.94126679679257	5.56325596140912	4.97826164405703	5.36943932525768	4.95908792725782	4.96476208084648	4.95431786499078	4.74125859906994	-0.657204451668613	0.0516212113182912	0.236170857463983
Merged-chr13-81230332-4	chr13	81230234	81230434	+	981.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	266260.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	5.63189901995505	5.41149602781527	6.10936958653374	6.28711170579786	4.91932789352387	5.29411351682428	5.26127273914217	5.06971108503782	-1.36093665300398	4.22688331216551e-05	0.000977152735552546
Merged-chr7-118486124-1	chr7	118486024	118486224	+	553.0	f1_c57bl6.idr	3' UTR (NM_001033380, exon 1 of 1)	3' UTR (NM_001033380, exon 1 of 1)	5851.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	2.71131603698521	3.29714003973976	2.78593126172384	2.75296648219583	2.9275581934066	3.2198366231915	3.09437929044733	3.16080416749254	0.78904804386418	0.218281734489864	0.525469276895768
Merged-chr19-5952184-4	chr19	5952085	5952285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 7 of 17)	intron (NM_001164057, intron 7 of 17)	12021.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	6.9351866558795	7.55436170666521	6.98842378267987	6.88122258891578	7.09251404600089	7.03156032682848	7.06239246257404	6.80599235547197	-0.155692820577292	0.498643856873243	0.767747590057983
Merged-chr3-69185329-3	chr3	69185221	69185421	+	935.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37098.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	4.00126414075074	3.96160741512901	4.09288221170957	4.04095926357409	3.52319760057748	3.86181991489497	4.19827571431839	3.90160428450498	-0.38465158640058	0.406492916441987	0.702958194835378
Merged-chr11-105348003-4	chr11	105347877	105348077	+	859.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008626, exon 26 of 30)	exon (NM_008626, exon 26 of 30)	55331.0	NM_008626	17534.0	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	3.73148746638086	4.04713139745014	3.46732716522561	4.09154607394246	4.06237873995502	4.35553864443709	4.20870869180951	4.22565612787236	0.886915928919247	0.0649410831396505	0.271063235606473
Merged-chr13-24781299-4	chr13	24781172	24781372	+	934.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19335.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	3.62394725654701	3.60525567934959	4.07536101886429	4.00177743040598	4.20824605034515	3.74210079247338	3.87769022585037	3.73703162290557	0.184657754736299	0.705855036237991	0.881859110549825
Merged-chr13-110471750-4	chr13	110471648	110471848	+	878.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76704.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	4.3878474835415	4.24499758678467	4.34430007324011	4.42811644115594	4.39561419020362	4.10953936854799	4.73870944900149	4.69269362565102	0.345637994941055	0.37963942942144	0.682157007046657
Merged-chr3-75835709-4	chr3	75835594	75835794	+	976.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121255.0	NM_175193	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	4.71409492132925	4.29515210675939	4.93555683463134	4.77650535052657	3.82340470871235	4.23727032029576	4.5080202697843	4.26178125134673	-1.11597649248145	0.00945464260959191	0.075836376640539
Merged-chr13-48516116-4	chr13	48516014	48516214	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2678.0	NM_001164576	67911.0	Mm.251375	NM_026450	ENSMUSG00000050954	Zfp169	1700025J14Rik|4930429A13Rik|BE688704	zinc finger protein 169	protein-coding	4.40245477851494	4.40203733105039	4.48682900895108	4.82364091783863	4.67250283645078	4.39397620137413	4.04296417147464	4.31097831791759	-0.385846219119265	0.351578870093839	0.658910409408162
Merged-chr6-89362675-8	chr6	89362579	89362779	+	948.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008881)	promoter-TSS (NM_008881)	-66.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	4.42756705931617	4.27809423216199	4.19667646342751	4.09606357281703	4.81826380883194	4.27301975225565	4.91820426682822	4.29163688908664	0.850249108893917	0.0359598083087296	0.188408538512677
Merged-chr5-130129578-4	chr5	130129458	130129658	+	889.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013837, exon 4 of 6)	exon (NM_013837, exon 4 of 6)	-15330.0	NM_172509	212919.0	Mm.55812	NM_172509	ENSMUSG00000034110	Kctd7	4932409E18|9430010P06Rik	potassium channel tetramerisation domain containing 7	protein-coding	4.84225435579218	5.40339741395421	4.64278915673021	4.4411894609192	5.21650835125365	4.9427479632277	4.62149902053894	4.83980895844183	0.0936445853986496	0.816554001552804	0.929373690915054
Merged-chr5-143990277-4	chr5	143990165	143990365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177682, intron 14 of 14)	intron (NM_177682, intron 14 of 14)	24588.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	6.61790272038769	6.59016984406089	6.7963902310262	6.82079992686173	6.59321567419545	6.53367595541789	6.841536814751	6.90940195936334	0.0138779126287229	0.94805193832937	0.981359015857754
Merged-chr6-30856144-4	chr6	30856041	30856241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149738, intron 10 of 24)	ORR1B1|LTR|ERVL-MaLR	40653.0	NR_149738	54160.0	Mm.39896	NM_017478	ENSMUSG00000025607	Copg2	AW227625|gamma-2-COP	coatomer protein complex, subunit gamma 2	protein-coding	6.19351850848265	6.13647300722687	5.75456848019785	6.27825409407265	6.45674989833516	5.90690159922985	6.2922226558274	6.48505049753873	0.295779811649504	0.255330604175717	0.566880133331982
Merged-chr17-65608951-4	chr17	65608848	65609048	+	972.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355402, intron 1 of 6)	Lx8|LINE|L1	4607.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	4.79984903972466	4.69095765411682	5.16115411378067	4.92375383358715	4.88470819162094	4.85780796620073	4.48403702868274	5.06914722477057	-0.125409113919859	0.72134582238705	0.888753092785481
Merged-chr1-171238667-3	chr1	171238571	171238771	+	876.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153064, intron 5 of 12)	intron (NM_153064, intron 5 of 12)	-4322.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	3.76816840214941	3.4826538223376	3.56290043681718	3.3023457446306	3.95327764300781	3.73579812880031	3.60287217456694	3.44459260935734	0.556460107358621	0.274913529448235	0.586695952765747
Merged-chr11-97942578-4	chr11	97942491	97942691	+	973.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163608, intron 7 of 13)	intron (NM_001163608, intron 7 of 13)	43855.0	NM_028199	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	5.18049312406555	5.77503700965244	5.10844538445764	4.90288095964372	5.85227398327756	5.82539577504971	5.62284359874148	5.62292050236182	0.791171169054893	0.0141894816334792	0.100858109964991
Merged-chr11-117963554-4	chr11	117963472	117963672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	5794.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	8.65220591703728	8.76815002486986	8.14191398472979	8.0635126792842	8.53610514101173	8.58858793632769	8.58779053691598	8.49644642853313	0.142223190746415	0.480511960813876	0.755986933795387
Merged-chr3-116808755-4	chr3	116808668	116808868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081326)	promoter-TSS (NM_001081326)	-602.0	NM_001081326	77559.0	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	5.96447605545822	5.93581649527712	6.03207572873503	6.20908164179152	6.34789198604222	5.77933147289662	6.33821726452727	6.04918068878591	0.169220241754991	0.509881101477156	0.774306608029494
Merged-chr12-91735796-4	chr12	91735688	91735888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 3 of 6)	intron (NM_175367, intron 3 of 6)	50648.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	5.88131287396771	5.56374298489786	5.78914590217661	6.01139896693561	5.73001232160132	5.69873088930155	6.03790723149701	5.78504718433517	-0.0247091993346809	0.925934572784758	0.972707719010402
Merged-chr1-57868880-3	chr1	57868808	57869008	+	692.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164566, intron 2 of 11)	intron (NM_001164566, intron 2 of 11)	23337.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	2.76868263332578	2.85778745729869	2.70889653890106	2.97252445850509	2.25606606663472	2.46020044582141	2.63685529522475	2.50870824336727	-2.14282429437498	0.00709382283748529	0.061486996559835
Merged-chr9-64784966-4	chr9	64784845	64785045	+	872.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26066.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	4.54132241827886	4.20332127922355	3.98955144970511	3.70514398219527	4.27545929801512	4.26645883910513	4.12165131484356	4.18365967015909	0.203349190024172	0.653673208454593	0.855149414296956
Merged-chr13-115150072-4	chr13	115149969	115150169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48105.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	6.23384857825692	6.05909769483974	6.49140597312581	6.58122067966855	6.25653431412573	5.98982802690266	5.90648631381465	6.0249899631896	-0.46925790022982	0.0639262757754024	0.268591487126933
Merged-chr1-156660822-3	chr1	156660721	156660921	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023141, intron 4 of 5)	ERVB7_1-LTR_MM|LTR|ERVK	13518.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	3.05600923229625	3.04033642475986	3.14171014206338	2.3933382398863	4.79030139745893	4.2335390714622	3.89161838820787	4.53003448050793	7.13450534716099	3.43950285799857e-16	6.74436291816751e-14
Merged-chr6-5363200-4	chr6	5363089	5363289	+	892.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-20197.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	4.52035544706947	4.1721467692193	4.77738668552708	4.78531617405991	4.32633175103838	4.52286882152691	4.459391607651	4.43438337634015	-0.368160437509853	0.346570020864271	0.654753888817761
Merged-chr12-34696956-4	chr12	34696831	34697031	+	992.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-168042.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	5.32510632718664	5.00107713017496	5.05455360224652	5.17611783097565	5.14233432674623	5.15974125361071	4.88903989832653	4.83161080228594	-0.242027171747618	0.443387763914484	0.72990713266033
Merged-chr7-73595992-3	chr7	73595898	73596098	+	838.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-37603.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	3.30720492661392	3.43543590815656	3.19615524489491	3.03590195054895	3.13400878054796	3.11781979019331	3.12546021345231	3.13500384741497	-0.452622910948533	0.423417757986227	0.715311701020053
Merged-chr5-99516401-1	chr5	99516301	99516501	+	967.0	f0_balb.idr	intron (NR_030692, intron 2 of 3)	MTD|LTR|ERVL-MaLR	212659.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	4.01311313501614	3.44311146477877	3.35660140522178	3.65316928805507	3.231062013879	3.40827473280079	3.28264495933993	3.47199465946917	-0.990280205193261	0.070322042210593	0.284060794648701
Merged-chr14-63193741-7	chr14	63193586	63193786	+	995.9428710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201610)	promoter-TSS (NM_201610)	-161.0	NM_201610	382913.0	Mm.239490	NM_201610	ENSMUSG00000035121	Neil2	Gm1212|NEH2	nei like 2 (E. coli)	protein-coding	5.02822287749825	4.61186618593417	5.09046570047487	4.65577760827472	4.92323986926	4.88439061498953	4.4210454110659	5.05663606881618	-0.0142109692028251	0.969224744171078	0.988897382070054
Merged-chr19-9991469-4	chr19	9991349	9991549	+	924.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011913, intron 6 of 11)	ID_B1|SINE|B4	8803.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	3.71566460000043	4.29428532750609	3.87828914221731	3.76967653735003	3.92107879233314	3.77627363383254	3.81100043516257	4.10743758448937	-0.0597084066805639	0.898488502681252	0.962198915721554
Merged-chr2-31726930-4	chr2	31726832	31727032	+	892.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283047, intron 2 of 11)	intron (NM_001283047, intron 2 of 11)	-33007.0	NM_009594	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	4.39906940256299	4.50607750584148	4.44374087817022	4.36112929304465	4.89524476223147	4.57391563008823	4.46587281613202	4.44095043983504	0.440459473097463	0.233389483413256	0.543040635259939
Merged-chr10-122116792-4	chr10	122116702	122116902	+	913.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-2895.0	NR_027637	100043513.0	Mm.429141	NR_027637	ENSMUSG00000111952	Gm4489	Gm241	predicted gene 4489	ncRNA	4.09190861933257	4.17262564291057	4.781219298439	4.46530159800092	4.72459727345812	4.61366182204552	4.79025206009698	4.39224572043147	0.519118665797578	0.194789213611178	0.495422762653829
Merged-chr5-76132244-4	chr5	76132153	76132353	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8020.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	4.35814260114113	4.83301218328819	5.06772322187558	4.86100414298321	4.67483769427462	4.27238640277189	4.75728733270864	4.66451013459682	-0.418775402443245	0.274313425764857	0.586065413990777
Merged-chr5-136245400-4	chr5	136245298	136245498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302939)	promoter-TSS (NM_001302939)	-458.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	6.50333199318468	6.95562543910051	6.74238021065449	6.37502290416079	6.53485587131845	7.06772312535492	6.83122739868017	6.75193682767908	0.209759751457656	0.381717543424582	0.683890181565565
Merged-chr2-27071358-4	chr2	27071268	27071468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025376, intron 1 of 4)	intron (NM_025376, intron 1 of 4)	793.0	NM_025376	66139.0	Mm.330087	NM_025376	ENSMUSG00000009214	Mymk	1110002H13Rik|AI131587|Tmem8c|myomaker	myomaker, myoblast fusion factor	protein-coding	5.87663806968352	5.55670610439396	5.96607134813207	6.06290209267793	5.87915012417263	5.62553120115334	6.13142480003548	5.75359530261464	-0.0384106219935827	0.888076371361727	0.95799613184499
Merged-chr5-41707772-4	chr5	41707664	41707864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310592)	promoter-TSS (NM_001310592)	-73.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	5.65213325383958	5.48556633536093	5.78086559642627	5.57977209224465	5.86674288885915	6.23548023537291	5.88856176675967	5.84757744551525	0.556178905645137	0.0314859395715221	0.172940635292953
Merged-chr4-45408788-4	chr4	45408682	45408882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001009949)	promoter-TSS (NM_001009949)	-16.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	7.30713320125828	7.57187170464878	6.95093932776585	7.34159904886164	7.95535988945486	8.04259743519742	8.03597156107375	8.06319022634121	0.924670167486085	9.70783865083706e-07	3.41400319826053e-05
Merged-chr9-35099117-4	chr9	35098947	35099147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-17681.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	5.76634037699432	5.34093603453565	5.47275530528696	5.86607579870944	5.13404594307008	5.33924016698812	5.13578050785841	5.44095694642622	-0.666539931930883	0.0270235163486089	0.156414593267832
Merged-chr11-22782914-3	chr11	22782811	22783011	+	855.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76824.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	3.30798794091059	3.29254114886058	3.47226272062161	3.58638936129146	2.98097246160499	3.29824799996399	3.55495892126965	3.18496150307492	-0.573820973318004	0.315088361844321	0.62702878136683
Merged-chr9-99139135-3	chr9	99139031	99139231	+	680.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 1 of 23)	intron (NM_029094, intron 1 of 23)	1080.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	3.36300214248767	3.07713125828709	3.64086013947135	3.22544607469619	3.58016630942035	3.65511982528832	3.76495372000565	3.6386467603534	1.07975292990778	0.0378028257016225	0.194384091758141
Merged-chr10-57835635-2	chr10	57835535	57835735	+	979.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	41091.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	3.19382062835061	3.28668123818056	3.56658495416948	3.47027184971053	2.88465971343589	2.95400389889718	3.18277214617738	3.5642899166227	-0.794278584668601	0.201267597747841	0.503556256669362
Merged-chr3-8691249-3	chr3	8691142	8691342	+	845.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24204.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	3.69238265138331	3.55044802872956	3.58546302677417	3.45402810544779	3.43634261344862	3.8127076480421	3.57136468942687	4.00775310763986	0.475868414526098	0.337034607086837	0.646885264386813
Merged-chr15-39611105-4	chr15	39611003	39611203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053271, intron 21 of 26)	intron (NM_053271, intron 21 of 26)	-48408.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	7.07953480304571	7.02213280335364	6.73155586431403	7.03606747461946	6.68158937859369	6.49039841532899	6.72664564270219	6.8542362362242	-0.398793223930328	0.0537942993257775	0.242069490250446
Merged-chr13-101097044-4	chr13	101096941	101097141	+	910.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135086.0	NR_046158	328324.0	Mm.402274	NR_046158	ENSMUSG00000114590	5930438M14Rik	5930438M14	RIKEN cDNA 5930438M14 gene	ncRNA	4.9850813936554	4.79370446162739	4.98591585466398	5.19929141221495	4.81489236745488	4.72855660065197	4.89308782660089	5.11053642166277	-0.237468816558778	0.475195690794437	0.752111404319515
Merged-chr9-65542399-4	chr9	65542278	65542478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	37709.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	8.03418773455726	8.38663615031935	8.08832393760124	8.01227671118092	8.17167604666411	8.24639370460121	8.08168385857435	8.18227338239297	0.0430278331047394	0.797860737235762	0.921862017583033
Merged-chr11-50244658-4	chr11	50244548	50244748	+	810.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6116.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	4.01465047232124	4.27905485132732	4.33096408937193	3.7254476345836	4.14152652045466	4.45994933395647	3.89331816816631	4.11108681415798	0.169112689401415	0.710733557832331	0.884203816607274
Merged-chr2-132689410-4	chr2	132689314	132689514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358261)	promoter-TSS (NM_001358261)	-743.0	NM_001358261	73747.0	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	6.46078744934816	6.00780512012456	6.10820192200591	6.42809414166239	6.30384164283174	6.2850385222331	6.34541304568657	6.37349546498026	0.0769998845783383	0.743353317524584	0.89894073126818
Merged-chr12-100432092-3	chr12	100432002	100432202	+	843.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	MTD|LTR|ERVL-MaLR	88720.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	4.24283686091355	4.52732986639155	3.75981652451929	3.99442668213975	3.06561820875776	3.51668732199356	3.5143466066136	3.24816912149562	-2.76680938595354	4.64254329099005e-06	0.00013890356826792
Merged-chr11-115066949-4	chr11	115066850	115067050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4911.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	6.57946188544226	7.11486838272916	6.7524009415002	6.42678839129394	6.83663441058971	7.1425044176467	6.59598503272824	6.94930001454042	0.218457113672649	0.3710456024443	0.675118991216331
Merged-chr12-69145433-3	chr12	69145360	69145560	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	13726.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	4.35107100955255	4.57319554857986	4.67928679280557	4.53599019446101	3.62529305854589	4.14911456054121	4.15529460997702	3.6555213132177	-1.63516339715593	0.000344613512722655	0.00567828591143684
Merged-chr15-36578703-4	chr15	36578613	36578813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23140.0	NM_025712	66696.0	Mm.253627	NM_025712	ENSMUSG00000013611	Snx31	4631426E05Rik	sorting nexin 31	protein-coding	6.86583275203929	7.02892133219538	6.69038888891439	7.21315433989245	6.71299911237819	7.00210278612935	7.07958575211369	6.9674325343706	-0.0537991250625328	0.804930108190227	0.925113352884973
Merged-chr8-22962256-4	chr8	22962164	22962364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12572.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	5.25770778468187	4.49552956347223	5.40319329344688	5.48768320562488	5.0646599727208	5.12793956662068	5.2623984360038	5.711571209087	0.17024559352075	0.655056849134471	0.855873774083897
Merged-chr18-23896802-4	chr18	23896714	23896914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57874.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	7.46881526210499	7.64097537564111	7.82851338728206	7.90324062976685	7.47161105947526	7.49396173128549	7.5347830398322	7.45524837710288	-0.318618454780027	0.0798971038066904	0.306150463478939
Merged-chr10-10318991-4	chr10	10318917	10319117	+	873.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153297.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	4.62067097638076	4.76779997218761	4.50469610543114	4.96607566166248	4.21172354339624	4.01812144420365	4.35673047390889	4.32771830330648	-1.17234671187982	0.00285998550438582	0.0308067355049453
Merged-chr13-97137952-4	chr13	97137847	97138047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271464)	promoter-TSS (NM_001271464)	10.0	NM_001271464	320806.0	Mm.219675	NM_177266	ENSMUSG00000021666	Gfm2	6530419G12Rik|A930009M04Rik|EF-G2mt|EFG2|MST027|RRF2mt	G elongation factor, mitochondrial 2	protein-coding	7.38509168880991	7.33217607410575	7.21391579383741	7.30658630809494	7.58062888165531	7.67877505224241	7.64349456697511	7.58513339362785	0.412254245392893	0.0145920648860142	0.102799683484031
Merged-chr3-121536931-3	chr3	121536821	121537021	+	711.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4577.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	3.26080696703476	3.19903001633173	3.31826754518917	3.45963206232648	2.89555614602799	3.3135786434967	3.41082968590015	3.31645238436364	-0.278177718764823	0.628981147410739	0.84186252522657
Merged-chr1-191317958-4	chr1	191317868	191318068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025424, exon 1 of 4)	exon (NM_025424, exon 1 of 4)	150.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	6.02729501837887	6.23385486305726	6.65651489997836	5.93363844663363	5.92853490483917	6.16061849138472	5.7571427549378	6.3518128984748	-0.2592741466212	0.361095458345382	0.666400830448441
Merged-chr16-38348469-4	chr16	38348356	38348556	+	868.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017429, intron 1 of 2)	intron (NM_001017429, intron 1 of 2)	1457.0	NM_001017429	12856.0	Mm.27396	NM_001017429	ENSMUSG00000046516	Cox17	AI037035	cytochrome c oxidase assembly protein 17	protein-coding	4.66106263908595	4.01898782518104	4.32108340077816	4.4303943102487	4.33512782035727	4.20820242296479	4.34399591513852	4.13178308046049	-0.279811853042472	0.494359992022411	0.76502017164665
Merged-chr13-33089773-2	chr13	33089673	33089873	+	949.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173052, intron 4 of 6)	intron (NM_173052, intron 4 of 6)	5670.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	3.31747288741825	3.40549231753576	3.85847777372172	3.33078748432199	3.48148845260437	3.36863971092126	3.17970255153561	3.48750436638707	-0.350265760413973	0.522835476952048	0.782187280128837
Merged-chr19-40702663-4	chr19	40702529	40702729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	42859.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	5.26708816987835	5.64531189548632	5.26798626954925	5.40906714933261	5.15136180236281	5.37945155101525	5.04230547501361	5.32493542283535	-0.33533196085675	0.260206825241474	0.571961633434096
Merged-chr3-9466433-3	chr3	9466337	9466537	+	943.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 4 of 8)	intron (NM_133218, intron 4 of 8)	63359.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	3.78291268525655	3.98387115825777	4.23974628087199	4.10242902535136	3.90532286358563	3.90325166723517	3.87266447581437	3.60612905523302	-0.587768364069394	0.196314331367828	0.497311473856879
Merged-chr9-101074527-4	chr9	101074435	101074635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001100451)	promoter-TSS (NM_001100451)	-227.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	7.16324214403464	7.32670578855561	7.07817690625987	7.24969010001241	7.46161587993784	7.67460765037595	7.98721842990587	7.3675432504267	0.575100608370061	0.00511508875865274	0.0482937926451974
Merged-chr6-122742646-3	chr6	122742561	122742761	+	815.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011401)	promoter-TSS (NM_011401)	84.0	NM_011401	20527.0	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	3.66230173661378	3.7809275311531	3.76584781736998	3.40698546929024	3.64050943108733	3.40984524158984	3.59388457348531	4.10713909702898	0.18152693190359	0.724656267032177	0.890415158618739
Merged-chr18-70420452-4	chr18	70420276	70420476	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52078.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	4.55887321936236	4.21736846866172	4.6660893643634	4.60590784396544	4.28068494692873	4.24745938171441	4.15517937235738	4.21931624641055	-0.707374262135985	0.0706183246472054	0.284867927548328
Merged-chr8-85554536-4	chr8	85554422	85554622	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019794, intron 1 of 8)	intron (NM_019794, intron 1 of 8)	749.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	5.17234872035234	5.14877256006892	4.8145278742438	4.8851567449513	5.28888679120596	5.31494450182532	4.87155992083431	5.4234006440002	0.441515054296831	0.169753372894728	0.462484702184562
Merged-chr7-25477688-4	chr7	25477614	25477814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039187)	promoter-TSS (NM_001039187)	-89.0	NM_001039187	26365.0	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	5.92966747834742	5.89999854983198	5.9307167816583	5.895401149031	5.44689994477234	5.53362912578862	5.51126706713663	5.591177644724	-0.659182215189189	0.00913986279587985	0.0739784277857552
Merged-chr19-10486574-3	chr19	10486473	10486673	+	780.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3676.0	NM_133689	67752.0	Mm.25939	NM_133689	ENSMUSG00000035179	Ppp1r32	4930579J09Rik|AU015816|IIIG9|IIIG9L|IIIG9S	protein phosphatase 1, regulatory subunit 32	protein-coding	3.07810722913384	3.22109999480868	3.39449020754816	3.32640990882368	3.32681681607561	3.5659680220914	3.80190967317289	3.27520866987855	0.83121117766796	0.128342624943807	0.39860806793242
Merged-chr8-94532999-4	chr8	94532921	94533121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153507)	promoter-TSS (NM_153507)	-7.0	NM_153507	234577.0	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	6.30755062211606	6.33043822714496	6.39726643957336	6.62225848327891	6.14499400317725	6.26562103851682	6.12106182631858	6.16868423556159	-0.394593073779908	0.0823724829371324	0.311590102725309
Merged-chr15-76701449-4	chr15	76701341	76701541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027122)	promoter-TSS (NM_027122)	-101.0	NM_027122	69572.0	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding	6.70016248584892	6.78755757671238	6.42407295253959	6.28188836491003	6.97630593506293	6.44777510348459	6.80498101895538	6.66696539098181	0.277719256420948	0.244292933737076	0.555437511354735
Merged-chr18-57591777-4	chr18	57591684	57591884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 3 of 6)	intron (NM_029290, intron 3 of 6)	-39387.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	5.13342596860589	4.93511567453973	5.4926121176277	5.75298221861796	5.25761511108144	5.43981144137647	5.10935844476834	5.32236771117132	-0.182048590798341	0.589467222856966	0.820464677958613
Merged-chr1-180874222-4	chr1	180874122	180874322	+	914.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18886.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	4.73625324386439	4.75212613160591	4.77478098043604	4.16110326124436	4.95840275562916	4.94818009550537	4.59532782175879	5.00808825731735	0.579740813767178	0.125187032556044	0.39269700719698
Merged-chr17-24463979-4	chr17	24463892	24464092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6481.0	NM_025954	67078.0	Mm.28541	NM_025954	ENSMUSG00000043445	Pgp	1700012G19Rik|AI481330|AUM|G3PP	phosphoglycolate phosphatase	protein-coding	6.12738006960585	6.24267413584835	6.10947924868612	6.21054507738299	5.51040101708194	5.38297083157237	5.72916277816103	5.56405785420406	-1.01496245720303	5.29360274037644e-05	0.00118974849844413
Merged-chr15-76872491-2	chr15	76872351	76872551	+	675.125	f0_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1016.0	NM_001007568	71591.0	Mm.38195	NM_001007568	ENSMUSG00000022526	Zfp251	9130001M19Rik|AV339307	zinc finger protein 251	protein-coding	3.42341197709411	3.32998225193615	3.21030313472679	3.30548197334765	3.08058536057502	3.26173766523546	2.87490894764308	3.14926262546092	-0.867550296846545	0.130278888582115	0.401764265429851
Merged-chr7-4597177-2	chr7	4597077	4597277	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207270, intron 5 of 19)	intron (NM_207270, intron 5 of 19)	6864.0	NM_207270	545902.0	Mm.188925	NM_207270	ENSMUSG00000035429	Ptprh	R-PTP-H|sap-1	protein tyrosine phosphatase, receptor type, H	protein-coding	3.25019590411855	3.30563032638712	3.12048495112051	3.45972064091022	3.44572737136745	3.54066003412082	3.74196558465041	3.47884650916184	0.862493422190767	0.106175365702888	0.359092290951528
Merged-chr14-29980647-3	chr14	29980565	29980765	+	783.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027493, intron 1 of 12)	intron (NM_027493, intron 1 of 12)	2328.0	NM_027493	56249.0	Mm.215110	NM_027493	ENSMUSG00000015971	Actr8	5730542K05Rik|ARP8	ARP8 actin-related protein 8	protein-coding	3.79749484488196	4.04171576954863	3.95799644449842	3.47684344593009	3.68803157603631	4.31635806230278	3.83745390617808	4.51510414066259	0.797520617523465	0.113784269261462	0.37307449985495
Merged-chr13-60682951-3	chr13	60682853	60683053	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	80742.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	4.06415096016432	3.6637788139847	3.68850016820751	3.48099718991746	4.05543291944914	3.81225558902211	4.33488119396449	4.6495088797462	1.38267103137659	0.00438301424747645	0.043067168846097
Merged-chr4-151108620-4	chr4	151108524	151108724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 11 of 23)	CpG	19054.0	NM_001308446	105704528.0	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	-	predicted gene 13090	protein-coding	5.82118596718496	5.82228036700323	5.7746229376153	5.87730384352856	5.55292127496755	6.01925869802556	5.81557606454772	5.53129573001409	-0.152811937636924	0.56209579822953	0.805374951128865
Merged-chr19-57610710-5	chr19	57610518	57610718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181415)	promoter-TSS (NM_181415)	-416.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	6.23633695769805	6.52130928005733	6.25679206475456	6.18101226550489	6.12958622615275	6.41347156819585	6.22478231406331	6.49578448192247	0.0224001852467248	0.923794146480734	0.971863340184091
Merged-chr11-22780485-4	chr11	22780456	22780656	+	928.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	79179.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	3.10911317818676	3.00974354140261	3.33034275529711	3.43479406568743	3.14043751440532	3.0905023136705	3.03780233862236	3.04636636764276	-0.629252923981296	0.280278329749834	0.592308919118337
Merged-chr2-153784834-4	chr2	153784737	153784937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036629, intron 3 of 7)	intron (NR_036629, intron 3 of 7)	3958.0	NR_036629	100504221.0	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	5.73594750502404	5.63124345404478	5.38810799652723	5.61147310778543	5.66483950781461	5.68112575389891	5.12698033293998	5.75607532553971	-0.0283058383523388	0.922198089415329	0.971166412287228
Merged-chr8-95428357-4	chr8	95428258	95428458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008187, intron 1 of 5)	intron (NM_008187, intron 1 of 5)	6511.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	5.55487579736341	5.16690025120523	5.32453667332657	5.94801282066552	5.67040147688815	5.29878267273147	5.55380437332851	5.49798773024269	-0.0650034671743399	0.839569131145825	0.938950496537544
Merged-chr12-118994424-4	chr12	118994367	118994567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28046.0	NM_029961	77706.0	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	5.44644338457779	5.40253516596626	5.74163875004029	5.64041887318117	5.96560745289605	5.59419215250609	5.88896913930554	5.44359418199261	0.305387653276839	0.279153625457557	0.591369431345506
Merged-chr2-118602045-4	chr2	118601942	118602142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009773, intron 2 of 22)	intron (NM_009773, intron 2 of 22)	3831.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	5.5264912941728	5.95316058118676	5.40683959355276	5.25785943042388	5.96738126702007	5.67567296601069	5.82546844329886	5.91612914480781	0.500389243842137	0.0846584352287637	0.316617519128201
Merged-chr4-141766990-4	chr4	141766926	141767126	+	991.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172338, intron 11 of 14)	intron (NM_172338, intron 11 of 14)	20351.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	5.2398302807758	5.4523589202505	5.24071734295644	5.87544147031561	5.3496628466424	5.44829558899602	5.36717443817585	5.13557561761382	-0.310085582846077	0.330061637209839	0.641433224839941
Merged-chr9-119395106-3	chr9	119395006	119395206	+	982.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7072.0	NM_007397	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	4.19905364184751	4.11866600141805	4.19969320421134	3.44399659172312	5.04791488090901	4.81498906211421	4.97085353860797	4.6372895219765	2.03804503278186	2.34623934552584e-06	7.54645144036076e-05
Merged-chr4-134287327-4	chr4	134287223	134287423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163794)	promoter-TSS (NM_001163794)	-70.0	NM_001163794	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	7.452535972624	7.49970373864106	7.47284864661612	7.39716433133408	7.38723877308676	7.6683999228013	7.60312318461793	7.50491245546332	0.114585293313156	0.509267621817692	0.773959348649789
Merged-chr3-89331047-4	chr3	89330944	89331144	+	678.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6984.0	NM_007910	13639.0	Mm.16332	NM_007910	ENSMUSG00000028040	Efna4	EFL-4|Epl4|LERK-4	ephrin A4	protein-coding	3.26798790647691	3.75238273864249	3.46365874617211	3.481840616795	3.76989717669726	3.8051403294516	3.67099795547986	3.82881911083543	0.817586273535403	0.0938696568169529	0.335232650049258
Merged-chr3-135438220-4	chr3	135438156	135438356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025356)	promoter-TSS (NM_025356)	24.0	NM_001356594	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	8.84132702682676	9.00585703800912	8.83075332947563	8.46252324692042	9.07057043080247	9.29091969882493	8.99671302112955	8.84504560001649	0.329629876429993	0.0678002648116288	0.277838185299054
Merged-chr5-9186636-4	chr5	9186514	9186714	+	970.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24838.0	NR_152861	23857.0	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	4.56004908491066	4.15585159524662	4.72340623997667	4.85565310053668	4.78168038469334	4.60360049974171	5.03173641124902	5.0239679869539	0.536972332644905	0.164556110465033	0.454830996687285
Merged-chr9-40229037-4	chr9	40228934	40229134	+	838.729126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36718.0	NM_030713	80902.0	Mm.132196	NM_030713	ENSMUSG00000025602	Zfp202	C130037E22Rik|Znf202	zinc finger protein 202	protein-coding	4.24157508378105	4.23675834669411	4.33503700460759	4.36667274041373	4.54538506705229	4.50785544326983	4.44234240897487	4.53845701974018	0.482672312305439	0.186550418463722	0.484582803058514
Merged-chr5-95925730-3	chr5	95925632	95925832	+	578.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31207.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	3.08999912657691	3.23414560943307	3.19499924944316	3.06291178985581	2.81320679831516	2.73714983472489	2.84037852373843	2.84765650926571	-1.55917036223131	0.0137960860988016	0.0989764465430789
Merged-chr19-44407916-4	chr19	44407816	44408016	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009127)	promoter-TSS (NM_009127)	-207.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	5.08065350195954	5.23757401013747	5.20631498129224	5.18356907728801	4.88817950363913	4.79358939179235	5.1506838761384	4.93975530495613	-0.446232372857767	0.149866727439739	0.432314642043898
Merged-chr15-100615319-4	chr15	100615230	100615430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011873)	promoter-TSS (NM_011873)	-220.0	NR_045701	78445.0	Mm.44383	NR_045701	ENSMUSG00000097093	C330013E15Rik	-	RIKEN cDNA C330013E15 gene	ncRNA	8.45170486253472	8.56164624781535	8.15048323399709	7.9179941605428	8.58675165131518	9.03877107526209	8.56154746664591	8.41158884124291	0.478991614027126	0.0236842606348061	0.143084534690618
Merged-chr3-135431305-2	chr3	135431205	135431405	+	827.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6927.0	NM_001356594	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	2.74484893148827	2.9689855616498	3.1323436880064	3.16027048075461	2.84671126728521	3.18562222830544	3.06365697723986	3.13061122602655	0.163915103055442	0.789926332379545	0.918708056312353
Merged-chr12-89365017-2	chr12	89364917	89365117	+	653.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198587, intron 9 of 19)	intron (NM_001198587, intron 9 of 19)	411627.0	NM_172544	18191.0	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	2.89397395493389	2.49539807230233	2.76816869822752	2.44532812599101	2.94585638990683	2.94308609893374	2.99646683052847	2.89277976607837	1.38205455688471	0.0363061942591784	0.189515884509685
Merged-chr5-121284984-3	chr5	121284894	121285094	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 11 of 75)	intron (NM_181421, intron 11 of 75)	64775.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	3.56057559344853	3.69587407138629	3.44483063412724	4.0839908324843	3.34771131710231	3.29009308331035	3.96412211815177	3.44310776996659	-0.586821202658397	0.304536155985524	0.617074101767638
Merged-chr7-24890635-4	chr7	24890538	24890738	+	904.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360119)	TTS (NM_001360119)	5725.0	NM_001360115	20085.0	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	4.23901104385044	4.86928707589811	4.38667307565711	5.06882934542654	4.61460917396145	4.60741069471755	4.32076012480145	4.42950226306648	-0.44443140637427	0.288662539913556	0.600675639610214
Merged-chr15-55500253-3	chr15	55500160	55500360	+	821.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 44 of 47)	intron (NM_181277, intron 44 of 47)	57052.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	3.22184744873121	3.00576218105836	3.17120126009015	3.11420872054084	2.87422976812835	2.84004111281281	2.86705963444093	3.00067181617635	-1.02331308589193	0.0888170311423667	0.325217730319591
Merged-chr19-15829291-3	chr19	15829205	15829405	+	925.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95317.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	5.1265690743096	4.68712741099609	5.09886613717968	5.40445070505286	4.27986559500396	4.35083425549425	4.14417058333859	4.76672571049681	-1.51514143840062	0.000152596798720801	0.00289182309269113
Merged-chr13-52914748-4	chr13	52914663	52914863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016709, intron 3 of 9)	intron (NM_016709, intron 3 of 9)	14914.0	NM_016709	11992.0	Mm.252034	NM_016709	ENSMUSG00000021460	Auh	C77140|W91705	AU RNA binding protein/enoyl-coenzyme A hydratase	protein-coding	7.13783709701757	7.25052952800674	7.68267745061259	6.82195727868599	7.01585429541519	7.19530415255068	7.09161661537684	6.98730580575805	-0.241328085315903	0.302455743702294	0.614889106048942
Merged-chr5-110357730-4	chr5	110357626	110357826	+	743.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12996.0	NM_001310709	381667.0	Mm.332572	NM_001033459	ENSMUSG00000072754	Lrcol1	Clpsl3|Gm1679	leucine rich colipase-like 1	protein-coding	3.15799809798697	3.06038629884386	3.09233462880961	3.17995311870686	3.36478969021814	3.50933196415602	3.48201427987395	3.54371794786268	1.23783880446636	0.0188944502648435	0.123124423272113
Merged-chr9-22411497-4	chr9	22411400	22411600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026739)	promoter-TSS (NM_026739)	-11.0	NM_026739	68283.0	Mm.280669	NM_026739	ENSMUSG00000036411	9530077C05Rik	1110003N12Rik|mKIAA0895	RIKEN cDNA 9530077C05 gene	protein-coding	7.35342533578897	7.5437939226524	7.34417423476702	7.48503661280322	7.71713361561837	7.6798292149441	7.64662871016983	7.56094504535663	0.283892990827863	0.0958904668918423	0.3391833992394
Merged-chr17-35392947-3	chr17	35392853	35393053	+	858.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-1146.0	NR_051981	15016.0	Mm.439648	NR_051981	ENSMUSG00000055413	H2-Q5	H-2Q5|Qa-5|Qa5|Qat-5	histocompatibility 2, Q region locus 5	pseudo	3.0039577665173	2.98703889254009	3.08381752324708	2.58984431712715	4.19171407311559	4.29823776752472	3.35179439359521	3.84473174339865	4.03915156598675	3.21211995689167e-10	2.27951631517041e-08
Merged-chr16-16358935-4	chr16	16358731	16358931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276341)	promoter-TSS (NM_001276341)	200.0	NM_152816	74006.0	Mm.218820	NM_152816	ENSMUSG00000022789	Dnm1l	6330417M19Rik|AI450666|Dlp1|Dnmlp1|Drp1|python	dynamin 1-like	protein-coding	6.01221070964318	5.70763578509171	6.54397366562223	6.0071320941614	6.08888108792344	6.02672426103911	6.08749904494562	6.24871783215866	0.0304564071110286	0.910444804245977	0.966698252031332
Merged-chr8-119838535-4	chr8	119838444	119838644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	ID_B1|SINE|B4	2035.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	6.65264229878572	6.78294705793722	6.63825141502701	6.53074961068236	6.92514898910542	6.76697857824468	6.90745771529952	6.58576693845615	0.23068922846732	0.26686009551038	0.578475902617048
Merged-chr7-120871544-3	chr7	120871441	120871641	+	810.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267710, intron 2 of 17)	MLT1A|LTR|ERVL-MaLR	20352.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	3.70578528469102	3.41947326467132	3.3681202055346	3.65093175908251	3.33362534992304	3.48391248206357	3.64035866985886	4.08570449206487	0.367069508996604	0.494979320131443	0.765444126914769
Merged-chr8-105170545-4	chr8	105170453	105170653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161457)	promoter-TSS (NM_001161457)	-121.0	NM_001161457	12400.0	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	7.89289125968303	7.86015902857884	7.86562721353872	7.97050367627718	7.80554900197566	7.61687305976557	7.49037293860514	7.51272204129555	-0.367719395743927	0.0320392043293493	0.174899802512367
Merged-chr7-19800950-3	chr7	19800864	19801064	+	816.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4155.0	NM_023224	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	4.22798404262627	4.18037957258439	3.68611218965724	3.80345723292037	4.00022220619127	4.4735018695488	3.61088269823556	3.68419879919392	-0.0136980040238472	0.978843204280248	0.992516114931184
Merged-chr15-73505964-3	chr15	73505870	73506070	+	941.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6590.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	4.01814552883728	3.49568533046141	3.7854066514602	4.37120654508577	3.78578414818483	3.48331698487493	3.35713505779481	3.88158730624703	-0.929020952195471	0.0965248808270246	0.340395585235176
Merged-chr3-75279798-3	chr3	75279674	75279874	+	698.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-9696.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	3.72292664675221	3.30159925022975	3.53261288510503	3.25232260020023	3.25783452071835	3.42218555696899	3.41172787293001	3.42328004117925	-0.271365530954505	0.610599826583075	0.831814034830111
Merged-chr2-157139052-4	chr2	157138955	157139155	+	991.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3833.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	4.66370094378039	4.81743177041985	4.9420839172017	4.89223185252499	5.25723222969984	5.18437235846721	5.1736518957172	4.97392824046863	0.61535462454673	0.0495752477458988	0.230581046389818
Merged-chr14-57740869-4	chr14	57740763	57740963	+	882.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015771, intron 1 of 7)	intron (NM_015771, intron 1 of 7)	5260.0	NM_015771	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	4.45032126347654	4.22334832861255	4.59981800266249	4.72847126610059	4.10331151982189	3.92015352897636	4.26332531469796	4.23379896595735	-0.94120914143485	0.0225597319470294	0.138775369318666
Merged-chr5-8911771-3	chr5	8911625	8911825	+	643.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008830, intron 8 of 27)	intron (NM_008830, intron 8 of 27)	18004.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	2.76293035385166	2.80883920024933	2.76330669784788	2.40901369578969	2.51269315375651	2.45062667843567	2.62948651771229	2.7617846589138	-0.495037793582791	0.482951782939701	0.757463266863053
Merged-chr15-100039564-4	chr15	100039444	100039644	+	887.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	880.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	3.58625239471231	3.60632418492219	3.84438322358272	3.68900430711053	3.84830378067425	3.64344644503585	3.78095239475336	3.74535176507406	0.232550148169188	0.612510782327154	0.832792730628766
Merged-chr19-41051870-3	chr19	41051758	41051958	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001043228, intron 8 of 10)	intron (NM_001043228, intron 8 of 10)	22583.0	NM_009345	21673.0	Mm.25620	NM_009345	ENSMUSG00000025014	Dntt	Tdt	deoxynucleotidyltransferase, terminal	protein-coding	3.38793805503931	3.45102840305949	3.89012730607959	3.74949436866451	3.47916298426242	3.57239324125732	3.87254793469614	4.28082272345983	0.585044152502704	0.279859449196245	0.591926893125116
Merged-chr13-105048879-3	chr13	105048801	105049001	+	947.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	6029.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	4.06360731947115	4.05083336986778	4.45383929861961	4.01162950130283	3.70518065971173	3.98960630678082	3.7419097395971	3.75425321265956	-0.985602493834705	0.0306126476566965	0.16951747685981
Merged-chr13-12121937-4	chr13	12121831	12122031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-14986.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	5.80823717796892	5.99807020866401	6.35146873783015	6.57199697591869	6.18158385212596	6.09197519231215	6.58638026821391	6.51183860173553	0.186636454811841	0.504597434875028	0.770888948942188
Merged-chr1-92992446-4	chr1	92992338	92992538	+	908.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	13535.0	NM_022320	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	4.52564231267517	4.40520132079174	4.44244758172293	4.98576833004957	4.35439087702333	4.10556781419979	4.50547859063403	4.74596115007041	-0.40680420464823	0.328796912393741	0.640144325858488
Merged-chr7-128418232-4	chr7	128418153	128418353	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026418)	promoter-TSS (NM_026418)	-81.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	4.62594546315079	4.75174287698182	5.22099143316706	5.34959130500359	4.84165755872223	4.71607237203674	4.64903417760895	5.18915673314653	-0.335730692809548	0.375754097952134	0.678620748455671
Merged-chr6-115718436-4	chr6	115718333	115718533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40566.0	NM_144805	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	5.6189438486549	5.77970921973024	5.24725996397101	5.37311020191152	6.21014124996992	5.84838666900963	5.7188231308865	5.90394405342324	0.704378940818814	0.0126477147825281	0.0932732232742619
Merged-chr14-33118537-1	chr14	33118437	33118637	+	669.5	f0_balb.idr	intron (NM_001146022, intron 13 of 58)	intron (NM_001146022, intron 13 of 58)	66529.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	3.23401795853844	3.26712812479223	3.59004431051066	3.42298263553384	2.91145400867272	3.15627175222609	3.33295990475155	2.97528414339057	-1.11302887335514	0.0592689002759001	0.256549565357473
Merged-chr18-79327756-4	chr18	79327599	79327799	+	964.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-218308.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	4.14596276763147	4.18305842611035	4.09737151796448	4.57308771344924	4.11784546575609	4.06049182440039	4.3871961158432	4.40482257524768	-0.0869199754868577	0.83777630619951	0.938467150844715
Merged-chr19-53648927-4	chr19	53648828	53649028	+	807.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28378.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	3.6933390335237	3.74165027851753	3.6938318462878	3.61854526114961	3.89676730628265	4.01675027967091	3.83260654555276	3.84661186218203	0.640391321314413	0.145657486547922	0.425330997053419
Merged-chr8-34809201-2	chr8	34809102	34809302	+	810.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_176933, intron 1 of 3)	CpG-13950	1592.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	2.77308913587502	2.67308375945135	2.8318006418975	2.40696781287867	2.56048444908361	2.61541017057638	2.50300402845069	2.83015265848895	-0.212357528457621	0.760057545910717	0.905851390428209
Merged-chr13-41605763-4	chr13	41605653	41605853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163572)	promoter-TSS (NM_001163572)	-463.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	7.63547159118664	7.76811839354158	7.32036050963521	7.52093392900989	7.71698943557762	7.86377489451146	7.64903357737506	7.44951230430232	0.140033364139884	0.460361628817296	0.742636215610242
Merged-chr5-93267154-4	chr5	93267028	93267228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007635)	promoter-TSS (NM_007635)	-445.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	7.26736892754217	7.56040375542473	7.34431104812807	7.13028899439181	7.74869650711744	7.87540901696326	7.69953249674054	7.39057736179638	0.480447289262691	0.0149941254499354	0.104775587376656
Merged-chr2-27563936-4	chr2	27563842	27564042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48795.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	6.20275253592485	6.51522140460882	6.3005706832231	6.48070700643625	6.15416783281493	6.11522250078873	6.4571131669816	6.36837520837588	-0.168526391584966	0.46544292273955	0.745880221484531
Merged-chr8-75152837-4	chr8	75152713	75152913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43304.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	5.87987424895206	6.10097531451943	6.46964119116009	5.99635384328329	6.37907507762308	6.40369427806119	6.26995546440842	5.90145014394499	0.203579184016771	0.433146404036838	0.722823160126704
Merged-chr13-14063572-4	chr13	14063473	14063673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331176)	promoter-TSS (NM_001331176)	-85.0	NM_010282	14593.0	Mm.148039	NM_010282	ENSMUSG00000021302	Ggps1	1810026C22Rik|9530089B04Rik|AI843169|C79210	geranylgeranyl diphosphate synthase 1	protein-coding	9.51725137552005	9.61018429695425	9.61286299717589	9.7043068347824	9.49991969650294	9.6323417478182	9.53209820021624	9.30305898079681	-0.144487921878149	0.311716623708223	0.623665218229603
Merged-chr1-95316162-3	chr1	95316077	95316277	+	849.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026321, intron 1 of 2)	intron (NM_026321, intron 1 of 2)	2549.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	3.56267382430741	3.51359319029023	3.70817390391298	3.50116068281552	3.28760198369074	3.10604464189271	3.32817237118449	3.65942933172272	-0.719467277693278	0.182778933856789	0.479460757430375
Merged-chr7-127895667-4	chr7	127895565	127895765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178600)	promoter-TSS (NM_178600)	-48.0	NM_178600	27973.0	Mm.29703	NM_178600	ENSMUSG00000096145	Vkorc1	D7Wsu86e	vitamin K epoxide reductase complex, subunit 1	protein-coding	7.73902028440344	7.8371183122722	7.66605854912575	7.75986815180112	7.89252795480189	7.59031510931339	7.887894085951	7.7744691111873	0.0566804873108382	0.737225097183489	0.8963640666944
Merged-chr6-128765425-2	chr6	128765325	128765525	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	23216.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	3.03554995761594	2.66463279128909	2.93192600608475	2.54258351223198	2.77972409183459	2.58638102757918	2.61858113660491	2.48096158591122	-0.871541507285375	0.221716567572004	0.529830256279916
Merged-chr6-30509756-4	chr6	30509636	30509836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178625)	promoter-TSS (NM_178625)	37.0	NM_001347087	72649.0	Mm.45418	NM_178625	ENSMUSG00000029782	Tmem209	2700094F01Rik|AI428435	transmembrane protein 209	protein-coding	7.36536310983962	7.3113588649182	6.78204178544498	6.87593328387308	7.40260163349637	7.24893743232949	7.39608155486117	7.26022244822821	0.311262473141471	0.144269160286593	0.423199446117428
Merged-chr7-83883853-4	chr7	83883780	83883980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030705, exon 1 of 1)	5' UTR (NM_030705, exon 1 of 1)	461.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	6.68362132448061	6.68345871632607	6.83943330931268	6.58168982920655	6.38501837058722	6.89034742679131	6.73704621716842	6.61875410562789	-0.0474489742947981	0.828569256982548	0.934199261424475
Merged-chr16-44018575-4	chr16	44018470	44018670	+	923.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359085, intron 5 of 16)	intron (NM_001359085, intron 5 of 16)	-2134.0	NM_153528	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	4.4337404676275	4.60055751269585	4.47823409512561	4.55528519620642	4.78949990700532	4.37066018494458	4.61814087582231	4.71044196679123	0.258778584885381	0.470214678491763	0.748973227079762
Merged-chr18-37999581-4	chr18	37999475	37999675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205336)	promoter-TSS (NM_001205336)	-606.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	7.16378359797783	7.40257171791998	7.23064305809569	7.22195866260816	7.04210666054989	7.05342405980047	7.03619971431121	6.79826086665255	-0.36908342237118	0.0509697584003281	0.234214101560811
Merged-chr9-75549202-3	chr9	75549093	75549293	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	10464.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	3.99773489724574	3.62876833587127	3.92695174447963	3.16060888163473	5.97054945858151	5.96876137740872	5.85211655906777	5.74838207612156	5.13527915482943	6.63264533405209e-37	1.68608950797319e-33
Merged-chr7-41500550-4	chr7	41500493	41500693	+	994.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033530)	promoter-TSS (NM_001033530)	-703.0	NM_001033530	101835.0	Mm.370336	NM_001033530	ENSMUSG00000074166	AW146154	AI451288	expressed sequence AW146154	protein-coding	4.79615520579807	5.05262740018717	4.96824524496958	4.59891213496413	4.58189072163412	4.77428161887818	4.6601131340097	4.82998235780397	-0.302523644183246	0.389006149670992	0.689363154966003
Merged-chr3-139064529-4	chr3	139064433	139064633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 1 of 13)	MLT1G|LTR|ERVL-MaLR	10668.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	5.94117653611404	5.96992490188288	5.94221507572277	6.16699864207438	6.12262678306931	6.09496585995977	6.25206123437745	6.15021187437311	0.204882724989885	0.382053940073816	0.684226111802756
Merged-chr9-13314145-3	chr9	13314041	13314241	+	964.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	67185.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	5.78455211190101	5.1469945611518	5.62246714136812	5.85741813757235	4.44092252664352	4.65331373183097	4.33255672191511	4.16724956444927	-2.48541034570004	8.35109225985765e-11	6.48225077387576e-09
Merged-chr18-46601509-3	chr18	46601406	46601606	+	964.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010120, intron 2 of 2)	intron (NM_010120, intron 2 of 2)	3802.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	4.11240220311598	4.17699946820466	4.24634076969311	4.19859183352618	3.82430765747274	4.28450842886353	3.94819655213983	4.15646123827329	-0.339110232413347	0.419530472222193	0.712640132742369
Merged-chr11-45980595-2	chr11	45980495	45980695	+	895.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_173384, exon 1 of 5)	exon (NM_173384, exon 1 of 5)	285.0	NM_173384	214105.0	Mm.66708	NM_173384	ENSMUSG00000040489	Sox30	-	SRY (sex determining region Y)-box 30	protein-coding	3.11946622930223	3.27463052334464	3.11982599208177	3.05950117349206	3.32791489312539	3.3550749363363	3.53583428422825	3.18089472423785	0.794201163538592	0.138667648659582	0.414217206658965
Merged-chr14-103717690-3	chr14	103717588	103717788	+	713.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18256.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	3.5556277131559	3.37750336545372	3.19209007081187	3.81521621656592	3.45708791854132	3.43788041824497	3.77920261882092	3.55412609688782	0.136636203030061	0.803294221571613	0.924098642357789
Merged-chr14-101653792-4	chr14	101653730	101653930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016723)	promoter-TSS (NM_016723)	-137.0	NM_016723	50933.0	Mm.275970	NM_016723	ENSMUSG00000022111	Uchl3	-	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	protein-coding	6.80413446247354	6.99741836347129	7.12123379294831	6.39298274996207	6.68515651600387	7.04869543704575	6.27023083735572	6.60665849206451	-0.237056746084286	0.370440515620788	0.674656128275007
Merged-chr7-114144164-3	chr7	114144064	114144264	+	831.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-26383.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	3.35537471639804	3.58027590692718	3.67933322322017	3.43968422614152	2.76876255217597	2.87920369112657	2.76246498909815	2.92114797769722	-3.35504210597258	8.86585154040567e-06	0.00024747546933119
Merged-chr1-153752714-4	chr1	153752621	153752821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011882, intron 2 of 8)	intron (NM_011882, intron 2 of 8)	3295.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	5.93400951586003	5.49680779463509	6.04266032690695	6.20281568212031	5.88843009152467	5.81055789757781	5.94865006583851	6.229077342697	0.0331713919687264	0.905415082748778	0.964885884722431
Merged-chr11-53519829-4	chr11	53519732	53519932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252332)	promoter-TSS (NM_001252332)	96.0	NM_001347496	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	6.38752052617587	6.28999379747052	5.72243144364083	6.25747274662163	6.17223098582174	6.15462681282897	6.21544937667634	6.20506381640919	-0.0126592303977666	0.959328526369456	0.985513818852278
Merged-chr11-72518688-4	chr11	72518592	72518792	+	898.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029932, intron 8 of 11)	MTD|LTR|ERVL-MaLR	-28772.0	NM_153060	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	4.50297663413622	5.2808342330053	4.50368146002573	4.26170396913943	5.08112716129353	4.92392988004443	4.61106663110442	4.40731356403092	0.179365846432819	0.682473593244343	0.869837017092039
Merged-chr2-130664324-4	chr2	130664324	130664524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029832, intron 1 of 8)	CpG	221.0	NM_029832	77006.0	Mm.440063	NM_029832	ENSMUSG00000068290	Ddrgk1	1110001I20Rik|2600009E05Rik|AI326138|Ufbp1	DDRGK domain containing 1	protein-coding	6.61686413945097	6.7596139406481	6.75063339269262	6.25188564398118	6.57878509140093	6.57518728347058	6.81006319303016	6.54959366796589	0.0533380730340675	0.817210432275945	0.929714396168039
Merged-chr15-86191629-4	chr15	86191523	86191723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-5482.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	7.99372252439037	8.1014951045633	8.40990181060185	8.2380540249923	7.80230066097618	7.7923709194945	7.95675305394913	7.96902370522971	-0.405488497658943	0.0183377616912893	0.120883599396668
Merged-chr9-96525294-4	chr9	96525203	96525403	+	875.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46628.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	4.2005277590025	4.03037720840194	4.15294021082531	3.85946870568557	4.22002831069761	4.46568059864291	4.51111200858605	4.63487854507866	1.00486725194266	0.012038312730475	0.0901384691749506
Merged-chr2-32586997-4	chr2	32586918	32587118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276425)	promoter-TSS (NM_001276425)	-60.0	NM_001276425	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	8.39766520657169	8.42558432968752	8.36741269529704	8.27972229184916	8.3545955313109	8.47377074158824	8.34948470286773	8.16602387306649	-0.032244637396403	0.835116046725134	0.937183298750505
Merged-chr17-65786418-4	chr17	65786320	65786520	+	867.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152099, intron 2 of 20)	intron (NR_152099, intron 2 of 20)	3065.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	4.48672223575169	4.36853663079203	4.26693620659803	4.59585166813869	4.32054190328476	4.29360286932193	4.68678996121346	4.52437006482139	0.0359695809229186	0.925162614999035	0.97241738811813
Merged-chr6-52442259-3	chr6	52442164	52442364	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50187.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	3.651327203022	3.46662200381651	3.32233867240608	3.68957087766955	3.45334346651247	3.66605347022364	3.37134294285539	3.49555798583257	-0.171485782477187	0.736605628761457	0.896043754662457
Merged-chr8-22059983-3	chr8	22059879	22060079	+	786.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243161)	promoter-TSS (NM_001243161)	95.0	NM_007511	11979.0	Mm.87854	NM_007511	ENSMUSG00000006567	Atp7b	Atp7a|WND|tx	ATPase, Cu++ transporting, beta polypeptide	protein-coding	4.08641176361218	4.24359426065252	4.31527591748915	4.29484125146953	4.24837891598423	4.44147881542525	4.16508380297733	4.03416076606282	-0.0318815542292146	0.936345673016713	0.97693414934542
Merged-chr12-40471601-4	chr12	40471507	40471707	+	822.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	25554.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	3.80004005202204	3.36468332757583	3.65004676388856	3.48882972085512	3.80843334802759	3.53306402756763	3.68683503132852	3.88939891049885	0.500549692037623	0.303702440647176	0.616384934071608
Merged-chr2-167696810-3	chr2	167696809	167697009	+	852.5793460000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110334, exon 2 of 2)	non-coding (NR_110334, exon 2 of 2)	5732.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	3.40261069723889	2.97851529569993	2.97389203523727	2.46298862786304	3.10995587597707	3.08690803788631	2.76042211754593	3.03433248904333	0.00843421459281101	0.99052142082477	0.996288159917565
Merged-chr17-88450714-1	chr17	88450614	88450814	+	694.0	f0_balb.idr	intron (NM_001355742, intron 1 of 5)	MTA_Mm|LTR|ERVL-MaLR	10010.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	3.56766454741636	4.42453502521112	3.87814904835379	2.93426999454887	3.51324181018424	3.74830387082292	3.3022356255714	3.56612852861329	-0.827383856400953	0.200501178218088	0.502543620512921
Merged-chr3-58411763-3	chr3	58411663	58411863	+	687.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2957.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	3.50406509933579	3.16628582123489	3.33186111713571	3.61872101011804	3.27903043232278	3.3832323589583	3.31987432852787	3.98774488720865	0.338224134587552	0.556306996781983	0.801907201926826
Merged-chr1-143888682-1	chr1	143888582	143888782	+	911.5	f0_balb.idr	Intergenic	Intergenic	111404.0	NM_019562	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	3.92580886806986	3.64161075672835	3.7325669679674	3.95930666051678	3.58933732967403	3.61936814148961	3.81724748568825	3.87850055420297	-0.302799210701848	0.519183219577703	0.779903393261889
Merged-chr15-34580090-4	chr15	34579958	34580158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145469, intron 8 of 10)	intron (NM_145469, intron 8 of 10)	84747.0	NM_152894	67724.0	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	5.83508742681256	5.62788006267844	6.52484007392828	6.5286495074885	5.67902951009411	5.51250761420578	6.27395744925122	5.97239291919721	-0.478913531827114	0.148788593115951	0.430705733026974
Merged-chr14-55735307-4	chr14	55735199	55735399	+	971.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	10385.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	5.07236047058178	5.03974406938551	5.03988798964311	4.81321197223359	5.41775914338874	4.68880796550642	5.14264291744006	5.13381160355733	0.290582710774915	0.387020188081413	0.688039112029745
Merged-chr18-77774038-4	chr18	77773939	77774139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357532)	promoter-TSS (NM_001357532)	-154.0	NM_001357531	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	6.69985688854164	6.77795758428075	7.12089886999929	6.57292574914994	6.5960243369586	6.66537015659381	6.79550667185489	6.99106950548883	-0.0441924777594692	0.845515283596246	0.94153555929146
Merged-chr11-117109834-4	chr11	117109737	117109937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5335.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	6.92209599594504	7.41610008765493	6.83922884112197	7.15145895891282	7.36574102125609	7.38913778411416	6.66749116775649	6.98438711185277	0.0434895099898452	0.858727473092921	0.946576014812915
Merged-chr9-66594315-3	chr9	66594225	66594425	+	635.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1210.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	3.90794747288516	3.70310062623255	3.62290667442897	3.38368145336037	3.71041818920898	3.50509150929967	3.75725891997913	3.32320376768508	-0.216535379848497	0.677407676571711	0.86767362886796
Merged-chr16-92457848-4	chr16	92457753	92457953	+	792.229126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	MLT1A|LTR|ERVL-MaLR	8316.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	4.53163985685854	4.51072717785575	4.26274060932445	4.36898198953033	4.60836153923089	4.53442911571198	4.55098307927713	4.78511280839309	0.457242414143256	0.202224825402572	0.504686401154577
Merged-chr7-19202694-3	chr7	19202568	19202768	+	797.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347582, intron 19 of 21)	intron (NM_001347582, intron 19 of 21)	-9870.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	3.24248053481167	3.7047386158856	3.31347751621466	3.12429503973032	4.04862159277775	4.24598777373194	3.71108475460878	3.50460020877397	1.69172402180075	0.00199388308460818	0.0233348576256701
Merged-chr9-64824882-4	chr9	64824780	64824980	+	985.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162917, intron 2 of 34)	intron (NM_001162917, intron 2 of 34)	13869.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	4.60094970874036	5.08133388335735	4.72482492595253	5.00624977677666	4.49341532497011	4.49803010093397	5.01084454128611	4.90362573937304	-0.279144992575792	0.451202786878951	0.735800313712694
Merged-chr16-90924852-4	chr16	90924763	90924963	+	794.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026502)	TTS (NM_026502)	9986.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	4.82231816616143	4.75309913687988	4.47088020087372	5.13420440858625	4.18335256456594	4.29852772123444	4.95833769000328	4.46807651702	-0.686799253355014	0.0995712912059574	0.34614822645904
Merged-chr11-114523483-4	chr11	114523397	114523597	+	783.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74637.0	NR_027643	319819.0	Mm.50754	NM_177008	ENSMUSG00000062391	4932435O22Rik	-	RIKEN cDNA 4932435O22 gene	ncRNA	3.31964243578107	3.39881708457517	3.63540291847064	3.54258729473207	3.82404682935776	3.96580554730051	3.82620776098018	4.1751591869664	1.39204233981245	0.00389063744334708	0.0392225317819559
Merged-chr4-133012484-2	chr4	133012384	133012584	+	988.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146155, intron 2 of 6)	CpG-10425	978.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	3.05303047596314	2.95128578631669	3.05341368275137	2.81503990012384	2.95229191342329	3.22763173796082	3.10253921683392	3.47359276497169	0.946221302419672	0.106504843774985	0.359813388156043
Merged-chr16-70329686-4	chr16	70329569	70329769	+	976.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 1 of 15)	intron (NM_028803, intron 1 of 15)	15720.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	5.1387825278736	5.01381576806323	5.95920894410747	5.76125635539365	5.83483646825328	5.93179577880309	6.25470883011493	5.95490899740612	0.754538962887128	0.0225644553997636	0.138775369318666
Merged-chr19-44545823-2	chr19	44545723	44545923	+	834.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033343)	promoter-TSS (NM_001033343)	25.0	NM_001033343	240667.0	Mm.329873	NM_001033343	ENSMUSG00000051984	Sec31b	Gm341|Sec31l2	Sec31 homolog B (S. cerevisiae)	protein-coding	2.76824101491642	2.94225506074558	2.70799490316646	2.63481449424052	2.34767697618269	2.61174766716981	2.50032838148402	2.64313822999541	-1.29546158957127	0.0705190513714623	0.284658231758872
Merged-chr11-83191246-4	chr11	83191145	83191345	+	834.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011409)	promoter-TSS (NM_011409)	-85.0	NM_011409	20557.0	Mm.290922	NM_011409	ENSMUSG00000018986	Slfn3	-	schlafen 3	protein-coding	4.74488976324012	4.57673230378425	4.02415679006621	3.65687637107215	4.07298296544096	4.39834591516919	4.15752278202874	4.12483076362047	-0.307682634208306	0.533501891754036	0.788777831733804
Merged-chr4-6192197-4	chr4	6192098	6192298	+	886.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026534, intron 1 of 7)	MTC|LTR|ERVL-MaLR	1093.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	3.58632145599209	3.35749372962325	3.74275649981631	3.66754932374799	3.72629699817482	3.70371043502869	3.86398170946401	3.46961171090812	0.311585790131539	0.524309771964925	0.782862647284333
Merged-chr11-48858157-4	chr11	48858072	48858272	+	925.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13248.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	4.34086859711711	4.48229281832003	4.34153238623199	4.18101167890658	4.53308403658647	4.55801588288116	4.52694056763933	4.33884772255746	0.381116290472044	0.305024382458177	0.617502421247634
Merged-chr8-83609261-3	chr8	83609146	83609346	+	840.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308227, intron 1 of 2)	intron (NM_001308227, intron 1 of 2)	698.0	NM_001308227	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	3.5391008863663	3.16305950427989	3.33333238171255	3.16957472666629	3.27084707159128	3.44754716340857	3.07813360352331	3.33150368336826	-0.0542833931943901	0.921489726414885	0.970886721487516
Merged-chr18-32361594-4	chr18	32361470	32361670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045403, intron 2 of 2)	intron (NR_045403, intron 2 of 2)	-15647.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	6.84850121433323	7.10417612485986	7.08182727878085	7.25267958837918	7.18317317121734	6.86144861032843	7.03439540036201	6.85892468405746	-0.124935639545867	0.542157491276753	0.793691778334718
Merged-chr5-92375944-3	chr5	92375838	92376038	+	837.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-12196.0	NM_181728	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	3.38386637689781	3.67993540561876	4.01237127856912	3.45690117630621	3.68709425227004	3.74768298175625	3.66847021623475	3.96774678003087	0.371499874866254	0.458388301044942	0.741283112681362
Merged-chr11-78745722-4	chr11	78745630	78745830	+	951.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5999.0	NM_197989	69109.0	Mm.341420	NM_197989	ENSMUSG00000049489	Fam58b	1810009O10Rik|Ccnq|Fam58a	family with sequence similarity 58, member B	protein-coding	4.66630902033357	4.59065253812817	4.42360552815144	4.42123317488611	4.48709376271061	4.55365797936256	4.68099456121421	4.58798123981325	0.121198719596631	0.733233890233299	0.894434219693058
Merged-chr1-189662076-3	chr1	189661971	189662171	+	723.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081363, exon 11 of 18)	exon (NM_001081363, exon 11 of 18)	26015.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	3.60705724161427	3.61648447162757	3.76742138383523	3.35933930259599	3.34692478791987	4.12143246619888	3.89160123483186	3.66092513078718	0.582684640567275	0.263760482500045	0.575839660193672
Merged-chr5-72812843-4	chr5	72812734	72812934	+	933.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	55614.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	5.02006356729072	4.82355705139169	4.88586935988099	5.10893521192769	4.7690718022081	4.74216794197613	4.96422364018272	4.73166932837562	-0.344571663076971	0.293817390060354	0.606204004660023
Merged-chr1-134955991-4	chr1	134955877	134956077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081307)	promoter-TSS (NM_001081307)	-37.0	NM_001081307	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	7.34631378815953	7.59086705136217	7.41734450262733	7.53411861478434	7.25045256811581	7.04522387684322	7.50899296983988	7.46902926133875	-0.19904498643595	0.299803688210313	0.612049754004528
Merged-chr11-51635857-4	chr11	51635771	51635971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025346)	promoter-TSS (NM_025346)	25.0	NM_025346	66089.0	Mm.288183	NM_025346	ENSMUSG00000001054	Rmnd5b	0610039K22Rik|Gid2	required for meiotic nuclear division 5 homolog B	protein-coding	5.741809516051	6.04782005989948	5.79223452101983	5.56797680953289	5.94735183556809	5.99097934180394	5.81007698823033	5.66088879561706	0.118331942488083	0.656466034278974	0.856670300375292
Merged-chr6-29827400-4	chr6	29827324	29827524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	-26317.0	NM_001347084	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	6.10112092989266	6.12737342785146	5.99840504012796	6.18580707598067	5.83922633656116	6.107220550134	5.80747886090254	5.78285116092105	-0.357642172664597	0.138325041464894	0.413742830038649
Merged-chr14-99932099-3	chr14	99932007	99932207	+	799.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010636, intron 5 of 6)	intron (NM_010636, intron 5 of 6)	217689.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	3.95044143184512	3.6219867314147	3.49791941862286	3.68996460745695	3.55840550146308	3.73064972997958	3.70393249221452	3.66534903525459	-0.113447498458126	0.81213989502153	0.927419976441895
Merged-chr11-95688618-4	chr11	95688509	95688709	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21652.0	NM_008831	18673.0	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding	5.45959514738141	5.41475523739741	5.31713485041183	5.45555871576347	5.21503235046657	5.46140006718172	4.82380254770543	5.65651838868025	-0.168264246931866	0.595808477731572	0.824164868462124
Merged-chr10-10396284-4	chr10	10396178	10396378	+	947.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 21 of 36)	intron (NM_001127353, intron 21 of 36)	76036.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	4.72965707269866	4.69252257322491	4.73042073977401	4.93481432110678	4.63104167496021	5.04914306314829	4.98516407205136	4.64683168005754	0.0943543671223484	0.785706811469256	0.916621459911333
Merged-chr10-121489297-3	chr10	121489195	121489395	+	898.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-13045.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	4.7450358588819	4.43138068216069	4.88910165385231	4.81943578216674	4.76566701663158	4.62748208455926	4.83140129739365	4.95166268038882	0.132052649018471	0.703665887511888	0.880845147062817
Merged-chr5-30920742-4	chr5	30920634	30920834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001349066)	promoter-TSS (NM_001349066)	-825.0	NM_001310525	16548.0	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	5.13166454705916	5.49372905840546	5.19944179778478	5.42272922585581	5.19500854623984	5.23892995161556	5.46192036721431	5.25941856880489	-0.0777318076027901	0.792172300385763	0.919521862791064
Merged-chr18-76378900-4	chr18	76378787	76378987	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116442.0	NM_001311070	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	5.44655155230633	5.70457669540799	5.58669157220473	5.61263707296161	5.80422826694127	5.29462407987966	5.77440582968053	5.35234374953053	-0.00587854056156021	0.983654761580469	0.994100000074476
Merged-chr4-88864758-4	chr4	88864639	88864839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14652.0	NM_010502	15962.0	Mm.57127	NM_010502	ENSMUSG00000095498	Ifna1	Ifa1	interferon alpha 1	protein-coding	5.98097906672342	5.94888117039946	5.89527611782689	5.87613637450175	5.88512782919483	5.62065341514348	5.79646904888345	5.74870888944812	-0.238738589630955	0.333135476489627	0.64399149963087
Merged-chr10-81305012-4	chr10	81304921	81305121	+	904.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 2 of 17)	intron (NM_001293647, intron 2 of 17)	12058.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	4.41932703114117	4.2773109509785	4.22594146580876	4.55205500223513	4.91839124974154	5.0397504605892	4.40022567558242	4.54582053833013	0.801069871445268	0.0407311893359152	0.204029250729037
Merged-chr18-12224097-4	chr18	12224005	12224205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008720, intron 1 of 24)	intron (NM_008720, intron 1 of 24)	12281.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	7.41330491984337	7.34067063429596	6.89751651807576	7.34810902385801	7.29651178514068	7.48097022689043	7.48795666776764	7.51990252254985	0.23319638671555	0.234444859727435	0.544348599639192
Merged-chr15-59759833-4	chr15	59759724	59759924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35135.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	6.82208731689669	6.59742660230246	6.6268500131993	6.50277119161967	6.04402528524736	6.62415131377217	6.62288159254074	6.51104465351217	-0.256944064649356	0.281919707447229	0.594029802150557
Merged-chr15-77801378-4	chr15	77801272	77801472	+	740.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	40803.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	3.96627540031483	3.72146599300866	4.05767475254007	3.7014476880311	3.91268743520825	3.93792488408893	3.94964881470907	3.91658465410232	0.203230030007886	0.645168824562423	0.850746989820647
Merged-chr16-91855022-2	chr16	91854922	91855122	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 23 of 28)	intron (NM_001110275, intron 23 of 28)	76608.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	3.1415864039599	2.92450248817189	2.96096359837974	2.74577479245754	3.26235830209258	3.13467949638245	3.01330814544346	3.14026938688969	0.849244695171341	0.147309573730562	0.428288054430506
Merged-chr13-30767077-4	chr13	30766984	30767184	+	943.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013674)	TTS (NM_013674)	17851.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	4.55720323444181	4.46429667622542	4.14238555300356	4.50900312396266	4.5185766345187	4.15585788130038	4.64876488073051	4.95626699464454	0.376125390473211	0.352711769202658	0.659679630621423
Merged-chr13-92964362-4	chr13	92964254	92964454	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	X7B_LINE|LINE|CR1	-108950.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	4.72017282374015	5.10617219519634	4.81877590264047	5.21488354263056	6.02567631795542	6.2795942838149	6.23835148756379	5.73656799882342	1.82132686542243	1.20710308493736e-08	6.32232453883415e-07
Merged-chr15-93485504-3	chr15	93485412	93485612	+	828.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358750, intron 6 of 6)	intron (NM_001358750, intron 6 of 6)	87048.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	3.46891198106146	3.33888976856247	3.46940262068305	3.5742725495968	2.93149980061098	3.28044210367245	3.34402172663578	3.79755640910053	-0.312855613105752	0.59862393348641	0.825987886019831
Merged-chr8-46908366-4	chr8	46908265	46908465	+	881.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78522.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	4.40638978533893	4.22568635434954	4.21350976941238	4.98385252437108	4.42966017416027	4.66750678034161	4.86412344076467	4.40432263670104	0.175950722499309	0.686127073724391	0.871774647810045
Merged-chr3-51732627-2	chr3	51732527	51732727	+	901.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	71448.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	3.11586414475274	2.79984695295226	2.80162910032679	2.64910951562847	2.69676383121196	2.64421331244448	2.38045999789248	2.38444413074139	-1.60650061336839	0.0375133561635123	0.193434017557421
Merged-chr14-103898804-4	chr14	103898687	103898887	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54311.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	5.34170788185475	5.17867718802305	5.37263164794487	6.09097438926775	5.26809932984567	5.32447162635894	5.4583660831858	5.21146276013038	-0.449658990387176	0.190121276765439	0.489214169578744
Merged-chr4-124843654-3	chr4	124843536	124843736	+	617.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008636, intron 10 of 10)	intron (NM_008636, intron 10 of 10)	6928.0	NM_001347196	68920.0	Mm.272397	NM_001142727	ENSMUSG00000078570	1110065P20Rik	C530005M16Rik	RIKEN cDNA 1110065P20 gene	protein-coding	3.48551848600229	3.40276577048974	3.5881826573958	3.38792416692097	3.26590150539993	3.4288589083108	3.52336847284273	3.31408413944664	-0.278434382409858	0.586337433709898	0.818588624439808
Merged-chr17-70848004-4	chr17	70847879	70848079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164074, intron 1 of 2)	intron (NM_001164074, intron 1 of 2)	-1202.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	4.83812420241963	5.1067391748356	4.64464518575352	4.3593699164896	5.09905174211618	4.97601831438056	4.4456718009335	4.87118044942456	0.2409519679467	0.53769772998386	0.791217785547862
Merged-chr2-155517922-4	chr2	155517826	155518026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019811)	promoter-TSS (NM_019811)	-117.0	NM_019811	60525.0	Mm.255026	NM_019811	ENSMUSG00000027605	Acss2	1110017C11Rik|ACAS|Acas1|Acas2|AceCS1|Acs1	acyl-CoA synthetase short-chain family member 2	protein-coding	8.67695051706844	8.97165405981374	8.57316918578898	8.45739562899757	8.69977551424333	8.9036544383858	8.79869865485714	8.54845423751175	0.0767063029699632	0.664614702984899	0.861045413017661
Merged-chr10-40883903-2	chr10	40883803	40884003	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027879)	promoter-TSS (NM_027879)	369.0	NM_031877	83767.0	Mm.41353	NM_031877	ENSMUSG00000019831	Wasf1	AI195380|AI838537|Scar|WAVE|WAVE-1	WAS protein family, member 1	protein-coding	3.94250256108893	3.97964146562469	4.32496735921712	4.06244397037564	3.91074485947309	4.61145688811783	4.08193887278645	4.47722703387794	0.522143344862839	0.239606714031583	0.550089223908335
Merged-chr1-39368384-2	chr1	39368284	39368484	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252219, intron 2 of 4)	CpG	533.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	4.52953004072244	4.26137120092665	4.45113808003392	4.14554786489852	4.53549441688484	4.62224176591074	4.05835908149464	4.44825918601941	0.217512766935059	0.587885186269218	0.819399226001737
Merged-chr19-10979961-4	chr19	10979855	10980055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034898, intron 6 of 6)	intron (NM_001034898, intron 6 of 6)	-5285.0	NM_023529	69826.0	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding	6.97692445325367	6.85205246197816	6.27557655395164	6.64543279286094	6.85021489358248	6.68172638081272	6.57107050053904	6.89938674329611	0.0683316028727366	0.769858359653244	0.909883669779186
Merged-chr19-11788028-3	chr19	11787933	11788133	+	900.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 5 of 10)	intron (NM_011502, intron 5 of 10)	17618.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	4.41236042907497	4.25193129234002	4.12043970996268	3.86740906803455	4.10044763495156	4.0403983412525	3.95496663904802	4.293105200056	-0.157811590841661	0.716272577536607	0.886539133985621
Merged-chr17-35126465-4	chr17	35126346	35126546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033477)	promoter-TSS (NM_033477)	44.0	NM_033477	114585.0	Mm.42070	NM_033477	ENSMUSG00000043311	D17H6S53E	G4|NG34	DNA segment, Chr 17, human D6S53E	protein-coding	5.48735799604508	5.75182267358245	5.62477765994343	5.14582533517054	5.65126262107774	5.71987100591789	5.7186349609666	5.69605858035393	0.32558551546111	0.256253291339434	0.567812876264657
Merged-chr13-25857284-4	chr13	25857189	25857389	+	856.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109027.0	NR_045062	100503530.0	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	-	predicted gene 11351	ncRNA	4.11210205774283	4.27084589202694	4.67920059967727	4.9549701450138	4.31797727859446	3.82302976898998	3.87747987710607	4.16008004572537	-1.18454786031691	0.0133378632132017	0.0967467406147443
Merged-chr11-5012460-4	chr11	5012367	5012567	+	925.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243043, intron 2 of 22)	intron (NM_001243043, intron 2 of 22)	25643.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	4.92100349130047	4.7326986088443	5.08592511391694	5.59236608477343	4.55680080307425	4.54741230282331	4.6284098218011	4.98661652816682	-0.911046814696956	0.0187936262206358	0.12275820153453
Merged-chr15-38289719-4	chr15	38289593	38289793	+	819.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10207.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	3.8425719731624	3.69688489780039	3.73746923983219	3.82313177619202	3.98361517038395	4.15464627911305	3.77613191191711	3.84089977039185	0.473490511096151	0.284897734209342	0.596679097960536
Merged-chr7-127912468-4	chr7	127912370	127912570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026370)	promoter-TSS (NM_026370)	-47.0	NM_026370	67773.0	Mm.425492	NM_026370	ENSMUSG00000030801	Kat8	2010203C02Rik|5830450F21Rik|D7Ertd629e|MOF|MYST-1|Myst1	K(lysine) acetyltransferase 8	protein-coding	5.97415536724001	5.90588784761327	5.7284961840108	5.82223098687481	6.29062284909268	6.03497752406722	6.29285172295383	6.33763169879311	0.607461948175969	0.0097660597445652	0.0776257249088114
Merged-chr16-23234761-4	chr16	23234649	23234849	+	881.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	8728.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	4.21653317174506	4.09318366375036	4.26470893194295	4.44812606994793	4.29951502495819	4.52716439015149	4.73712718191208	4.30791171227857	0.468817105619264	0.239904602100596	0.550399004463438
Merged-chr2-168539246-4	chr2	168539160	168539360	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	MER3|DNA|hAT-Charlie	51105.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	6.06023845759278	5.61285445178032	6.43067645964261	6.35679548884692	5.22199324923677	5.2681899446585	5.69789617374576	5.61697630604294	-1.13778305316674	0.000235187055108694	0.00415555216908813
Merged-chr5-72329620-4	chr5	72329494	72329694	+	977.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122756, intron 16 of 21)	intron (NM_001122756, intron 16 of 21)	126251.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	5.3395778030398	5.41395596772083	5.7786026430491	6.3245914671379	5.53243067737214	4.92393052545876	5.90042416524961	5.70306322668086	-0.377793687114804	0.313583452498903	0.625506012930708
Merged-chr5-146810817-4	chr5	146810730	146810930	+	792.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15874.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	3.79990394514064	3.51200090301869	3.74850472393394	3.67375787841043	3.92195004343003	3.971324853393	3.78469795725608	3.94227509286016	0.64877984916711	0.146197361208264	0.426226056266237
Merged-chr10-39412952-4	chr10	39412849	39413049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	43150.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	6.65668803092072	6.84570020620953	7.19110906297049	7.41104072657079	7.09515427741852	6.78601417668063	7.31713795301339	7.13057828132277	0.0336846520329599	0.889372003549014	0.958519732455951
Merged-chr5-21737189-4	chr5	21737100	21737300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028431)	promoter-TSS (NM_028431)	40.0	NM_028431	73078.0	Mm.301655	NM_028431	ENSMUSG00000029017	Pmpcb	3110004O18Rik|MPP11|MPPB|MPPP52	peptidase (mitochondrial processing) beta	protein-coding	6.27598474231293	6.39857394902212	6.79549475748683	6.36978016628527	6.44075603524377	6.41461975663929	6.44161145484776	6.23312419658668	-0.119599141458793	0.605349002578661	0.828809276266572
Merged-chr8-11113434-3	chr8	11113336	11113536	+	983.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105006.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	4.91922886563865	4.79767061018261	4.57340796550754	5.19267107553512	4.38077687006635	3.90608855966812	4.08147447862854	4.30625930358554	-1.61842667195568	0.000126885821821859	0.00247780683441924
Merged-chr11-118488469-2	chr11	118488369	118488569	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153103, exon 14 of 14)	non-coding (NR_153103, exon 14 of 14)	11637.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	2.92261447081594	2.87998934473963	2.9229683710385	2.98196938175298	2.99528595349732	2.76028505568371	2.85215473262023	2.9800598344465	-0.111794194800292	0.852537896868382	0.944575331440412
Merged-chr10-127602751-4	chr10	127602653	127602853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	18395.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	5.43311132213626	5.04752638951717	5.51298234074333	5.80351166679941	5.00487061348659	5.16160857194984	5.29395091681134	5.08995299024101	-0.64584476670935	0.0464082254393596	0.221385368175603
Merged-chr7-80846111-4	chr7	80846024	80846224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15984.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	7.45402827251485	7.43628853154803	6.9325743267921	6.9488451231269	7.18304783838138	7.30131750128986	7.35326754873339	7.15419126906309	0.052356045585735	0.806721350562532	0.925483423510202
Merged-chr7-16729666-2	chr7	16729566	16729766	+	925.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTRETN_Mm|LTR|ERVK	7737.0	NM_011927	26368.0	Mm.27096	NM_011927	ENSMUSG00000007209	Ceacam9	AA410097|AW545709|Cea-5|Cea5|mmCGM8	carcinoembryonic antigen-related cell adhesion molecule 9	protein-coding	2.80885859564931	2.54256978355383	2.69468414714395	2.31857121924976	2.40529008842058	2.45880156370653	2.5599560015822	2.63190994614906	-0.436100588885436	0.545745413288393	0.795980613958413
Merged-chr14-31001601-4	chr14	31001484	31001684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026911)	promoter-TSS (NM_026911)	82.0	NM_026911	69019.0	Mm.28852	NM_026911	ENSMUSG00000021917	Spcs1	1810004F21Rik	signal peptidase complex subunit 1 homolog (S. cerevisiae)	protein-coding	6.28575494757907	6.19428147387282	6.42447066412593	5.72350006959938	6.08983173831673	6.22410643355563	6.01633357274185	6.49868198247348	0.0800200294916707	0.769364638094261	0.909742530773464
Merged-chr3-48101053-4	chr3	48100955	48101155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-74296.0	NR_040408	666202.0	Mm.465057	NR_040408	ENSMUSG00000103257	Gm7977	EG666202	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide pseudogene	pseudo	6.6978472058108	6.54687845141553	6.92245112094833	7.12186241669476	7.03301844946692	6.54827205185327	6.99704803454264	6.69425727477412	-0.0153825237501377	0.948269283014827	0.981388084353081
Merged-chr10-41980941-4	chr10	41980848	41981048	+	922.7625119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 5 of 17)	MIRc|SINE|MIR	37434.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	4.7084235090666	4.8258240515335	4.22104349172135	4.64012226270233	4.68134962160811	4.84312887862881	4.57202556545781	4.50677287750923	0.0737936967768161	0.842492186999124	0.940228149551751
Merged-chr18-12927583-3	chr18	12927444	12927644	+	949.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 4 of 27)	intron (NM_207530, intron 4 of 27)	14297.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	3.77006913683391	3.88298097362291	4.01051441036476	4.1114909920993	3.48947688707701	3.71928592831632	3.80653738315137	3.82011435339144	-0.741289058331522	0.113364891031484	0.372298587188797
Merged-chr8-71405984-4	chr8	71405874	71406074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172756)	promoter-TSS (NM_172756)	-38.0	NM_001310502	234396.0	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	7.14388615522683	7.04661557528146	6.50388877440565	6.80532131382676	7.1040001606797	7.36521302903981	7.04062169783105	7.05947275626219	0.34664680869331	0.113784603848763	0.37307449985495
Merged-chr3-127457960-1	chr3	127457860	127458060	+	679.333313	f0_c57.idr	intron (NM_001327938, intron 1 of 47)	B2_Mm2|SINE|B2	41155.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	2.57418095227082	2.51616981746991	2.57439509091219	2.35769124593996	3.67572371908529	3.42706576571233	3.33888726061812	3.13901569005353	4.82180281541456	7.91576393769626e-09	4.26845576758547e-07
Merged-chr9-40750388-3	chr9	40750288	40750488	+	915.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-50885.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	3.46475010645234	3.12463478287195	3.71911231270385	3.5092000765278	3.18597335499694	3.58179321195675	3.60786048744082	3.57080042934851	0.0758256203988741	0.890078814324605	0.958847957211779
Merged-chr12-76943202-4	chr12	76943089	76943289	+	982.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	19059.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	4.83785856310068	4.81311067471457	5.07111472646347	5.00416025737611	4.83291010757043	4.63954152414179	4.92009665507697	4.76023789050735	-0.294119206176809	0.371185441833891	0.675218087972974
Merged-chr17-87281548-4	chr17	87281404	87281604	+	869.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015506, intron 1 of 4)	intron (NR_015506, intron 1 of 4)	1310.0	NR_015506	74597.0	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	3.92658039877539	3.97345818623325	3.92715808955266	3.5783777050748	4.2950427427208	3.7751072885256	3.86115274216468	3.92482168565335	0.396157451110812	0.397331776492851	0.69576798253969
Merged-chr14-77036762-4	chr14	77036667	77036867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310648)	promoter-TSS (NM_001310648)	-5.0	NM_001310648	108811.0	Mm.102168	NM_175369	ENSMUSG00000034795	Ccdc122	4933415L06Rik	coiled-coil domain containing 122	protein-coding	7.4186203817469	7.68132620696333	7.43012008405369	7.40979895856492	8.10738349371633	8.18491298400673	7.94968173299087	7.56001669461107	0.633753289637472	0.00135642230500412	0.0172316229248418
Merged-chr4-99298883-4	chr4	99298803	99299003	+	850.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104756.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	3.77560028675818	4.0164359332196	3.64786223083738	3.57782115250577	4.55742705858075	4.27749426783105	4.55540489585879	4.39819319122751	1.81868943880607	1.56117391943398e-05	0.000410350067988889
Merged-chr15-58861388-3	chr15	58861288	58861488	+	789.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16C|LTR|ERVK	-11261.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	3.76427914638092	3.57689733331942	3.90822784393415	3.82297090159201	3.53973412188314	4.0277342410002	3.58998672369429	3.71098517899841	-0.151338882299801	0.75346661677497	0.902798885097597
Merged-chr10-99181095-3	chr10	99180958	99181158	+	796.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	72923.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	3.0591490450053	3.04144352766229	3.00250448087112	2.85612623304017	2.88736849627094	2.85108093305029	2.7377649439639	3.05786821127711	-0.428471769001392	0.482862937244819	0.757442282487415
Merged-chr4-46554870-4	chr4	46554777	46554977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	11563.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	8.29298866919472	8.41988188517839	8.53214979870107	8.66575230175734	8.32311829705162	8.24116889168949	8.35901969781164	8.33364118918004	-0.223043480503321	0.16372855265347	0.453517323007407
Merged-chr10-37192220-7	chr10	37192139	37192339	+	976.904785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53313.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	4.60762864796146	4.46134843241294	4.29936589124866	4.17628038578765	3.90667148083615	4.18522211364518	4.19032327703827	4.33962516627338	-0.569669783843641	0.170968079392254	0.464071117837823
Merged-chr10-121531743-2	chr10	121531654	121531854	+	896.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55040.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	2.77422808602381	3.02709127923293	2.63822522324888	2.69210843014186	2.64133813078876	2.88186248837359	2.88694060162382	2.8965260479159	0.171380342006643	0.789461661989067	0.918495794540122
Merged-chr16-17012799-4	chr16	17012711	17012911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038663, intron 1 of 7)	intron (NM_001038663, intron 1 of 7)	29429.0	NM_001038663	26413.0	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	6.31073714164962	6.49021989017403	6.17490595098924	6.17767405368799	6.48811910168875	6.59313272253101	6.38594592218973	6.23087072351745	0.212946160809868	0.349422318032751	0.656968967596101
Merged-chr11-90242602-3	chr11	90242505	90242705	+	850.166626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6871.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	4.24512253765353	4.02682585341379	4.28619475186581	4.32637869039731	3.68795291376601	4.09557036780134	3.67679017417235	4.06744684572384	-0.921961852892696	0.039605756910119	0.200476331325939
Merged-chr17-42480349-3	chr17	42480240	42480440	+	850.5277710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355270, intron 2 of 2)	RCHARR1|DNA|hAT-Charlie	130973.0	NM_181753	353344.0	Mm.184937	NM_181753	ENSMUSG00000043972	Opn5	Gpr136|Neuropsin|PGR12|TMEM13	opsin 5	protein-coding	2.94064607066149	2.92988225888271	3.01830337727719	2.76663549664748	3.60090579363709	3.64361458700936	3.55536023313612	4.06394550361034	3.11391556399476	6.01541627745857e-08	2.70443463197374e-06
Merged-chr3-69062978-4	chr3	69062876	69063076	+	913.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18234.0	NM_025863	66949.0	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	4.84096860289778	4.25637478604631	4.48135293229143	5.03848980906128	4.96761922234111	4.74653111789383	4.88571088710196	4.65107690656835	0.236257080188208	0.546664845953137	0.796486196515084
Merged-chr4-128619203-4	chr4	128619105	128619305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_205823)	promoter-TSS (NM_205823)	-586.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	6.58534213641673	6.36895887616735	5.89834080521382	6.08002108497939	6.43864708404092	6.15080552046997	6.23785552299408	6.5670039168215	0.165176100152163	0.521394552687167	0.781404854166528
Merged-chr15-8446605-4	chr15	8446519	8446719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2156.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	5.96010362762807	5.99981090806012	6.09097570790757	5.98390128943409	6.28189427990367	6.38276698679528	5.93078452570238	5.93393416160637	0.224710595284561	0.359071027603087	0.665009670693417
Merged-chr10-128373494-4	chr10	128373378	128373578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3441.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	8.57715858423982	8.65858255117639	8.56905507180473	8.74500281059824	8.65158729952939	8.68835292620503	8.70632385083383	8.68996528975966	0.0487327734959398	0.733828928518408	0.894664702105267
Merged-chr1-177141660-4	chr1	177141557	177141757	+	905.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	107110.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	4.83000742218678	4.24850813744376	4.39281997532814	4.23196607996473	4.33304570202458	4.28151925367563	4.60862227932649	4.47433965133233	-0.0167494422792175	0.966781289994874	0.988274266354715
Merged-chr13-119329669-4	chr13	119329560	119329760	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR2b|LTR|Gypsy	79351.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	5.28781256009423	5.45521978757828	5.18714467346029	5.88621484153419	5.64520534643535	5.14029720358173	5.88696236541955	5.4667506141672	0.106656562466544	0.750046984121193	0.901576629816678
Merged-chr7-58836990-4	chr7	58836888	58837088	+	839.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	178786.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	4.16018279422165	3.90496903915548	4.574830653381	4.02118258137748	4.39869947238957	4.13083905824391	4.44299579579189	4.53596453764137	0.503518025284136	0.233953757734441	0.543650161095435
Merged-chr1-119526349-4	chr1	119526240	119526440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_146103, exon 1 of 1)	5' UTR (NM_146103, exon 1 of 1)	186.0	NM_146103	226351.0	Mm.439806	NM_146103	ENSMUSG00000098923	Tmem185b	2500001K11Rik	transmembrane protein 185B	protein-coding	7.20247608888801	7.47567631878567	7.98071763395891	7.50302752111234	6.95282687205394	7.53364846341663	7.33989074360044	7.44014752569533	-0.322923102403632	0.164620885866201	0.45485234168206
Merged-chr6-136518707-4	chr6	136518604	136518804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019426)	promoter-TSS (NM_019426)	-147.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	7.81559066053281	7.87615497274472	7.79359246176098	7.72965503274179	8.08168179656705	8.07624948398281	7.94415526708548	7.81160946086438	0.238502297061263	0.146618666172528	0.427055299038717
Merged-chr17-83687163-6	chr17	83687012	83687212	+	824.194458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-19051.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	3.69877738134324	3.61629084903552	3.80374044910952	3.9561724820054	3.92276147150671	3.76012794138093	3.73764855864881	3.89792499288721	0.13964404886641	0.761373855970456	0.906524199493512
Merged-chr7-122258687-4	chr7	122258579	122258779	+	984.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30446.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	5.12656022310355	5.20495751016152	5.31910042534386	5.55884358311498	5.23662293252188	5.49250875092037	4.87943326844017	5.50733943406497	-0.0522144040285915	0.871477362251036	0.951627503185851
Merged-chr4-115839166-4	chr4	115839083	115839283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021461)	promoter-TSS (NM_021461)	-15.0	NM_001285488	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	7.63274708938087	7.36428989092618	7.26087269489797	7.15056466880272	7.61572290866689	7.64320665847968	7.67645217910959	7.43220054110816	0.321292453766118	0.0928083010985175	0.333351935831922
Merged-chr11-106160205-7	chr11	106160273	106160473	+	944.3618769999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356459)	promoter-TSS (NM_001356459)	-197.0	NM_172397	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	4.55136691209711	4.5536162730665	4.55210346341577	4.34341510016212	4.40872657167877	4.90404318739239	4.27150120916138	4.28741120376181	-0.0127924740636982	0.973961431925855	0.990691238021785
Merged-chr11-6274956-4	chr11	6274868	6275068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134020)	promoter-TSS (NM_134020)	-131.0	NM_134020	103694.0	Mm.254495	NM_134020	ENSMUSG00000004394	Tmed4	1110014L17Rik|AI326346	transmembrane p24 trafficking protein 4	protein-coding	7.10085728981403	7.47132120625583	6.892456860155	7.28480693857574	7.30820076339504	7.0845775572093	7.29636409458552	7.37696179231425	0.0811148471340141	0.692526739705995	0.874986225905201
Merged-chr6-93122877-3	chr6	93122780	93122980	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	182298.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	5.35940009270847	5.05299651758171	5.21104516406058	5.36555207697036	3.78616228419771	4.30399334166909	4.26228401292753	3.98095852908215	-2.7426692345431	3.39001332532875e-11	2.79603428138558e-09
Merged-chr14-102983334-4	chr14	102983234	102983434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039592)	promoter-TSS (NR_039592)	-697.0	NM_177715	239217.0	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	6.97966006562547	7.16753189288883	7.3098828330756	7.38026619000848	6.90548318711599	7.10517136754451	7.03296318809144	6.9759518147382	-0.309530720130863	0.113822915074771	0.373103335015803
Merged-chr2-73007591-4	chr2	73007492	73007692	+	909.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-27146.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	4.60684102018019	4.21703525028174	4.60758326334006	4.87585006398142	4.43669254951426	4.52463747183517	4.58611249252026	4.78678195955839	-0.059868144483224	0.877318320753055	0.954093522494923
Merged-chr1-143998737-16	chr1	143998500	143998700	+	869.78125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009061)	TTS (NM_009061)	5549.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	3.58640477096021	3.66853291381474	3.41559899044554	3.24128736752714	3.77407219095589	3.59155568310363	3.40335614556771	3.82734706973591	0.590667591318879	0.24814991088009	0.55924083417344
Merged-chr13-63246664-3	chr13	63246536	63246736	+	971.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	6607.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	3.85587839809634	3.7825156573517	4.18909737686393	3.76130353802667	3.38945383925239	3.71178247328072	3.45904863800882	3.70278296377696	-1.03720196239884	0.0374919743564408	0.19335177820005
Merged-chr6-71930254-4	chr6	71930158	71930358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009088, intron 11 of 33)	intron (NM_009088, intron 11 of 33)	21205.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	6.98652056224393	6.80248011065954	6.88739907240364	7.11956749221608	6.73901558781524	6.47817193387671	6.70051558838037	6.60615739582499	-0.455895877266385	0.0271797291926802	0.156980358991057
Merged-chr8-74993684-4	chr8	74993605	74993805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316753)	promoter-TSS (NM_001316753)	55.0	NM_178017	70823.0	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	6.06984666603722	5.74543067024121	5.78963095070845	5.62568892665323	5.75356791413945	5.69886802201312	6.11452278835924	5.7106618992987	0.0419994998148622	0.87620649360664	0.953442007069344
Merged-chr2-152735189-4	chr2	152735096	152735296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1055.0	NM_010495	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	7.55672960040588	7.26007906167735	6.41288370819663	7.12676532199665	7.48472581438056	7.79344859674216	7.71726728135677	7.09367535344312	0.530134875478528	0.0508715370710105	0.233928880236285
Merged-chr15-88178621-1	chr15	88178521	88178721	+	841.25	f0_balb.idr	Intergenic	Intergenic	-136253.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	3.52293407696831	3.59893522690711	3.31952633153179	3.89361474748689	2.78120289926203	2.81116797694696	2.7775002481566	2.86212670064603	-4.16706773546159	2.2245246698109e-06	7.18418518477632e-05
Merged-chr9-22071431-4	chr9	22071357	22071557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310759)	promoter-TSS (NM_001310759)	-81.0	NM_001310759	319601.0	Mm.347707	NM_177318	ENSMUSG00000038895	Zfp653	E430039K05Rik|Znf653	zinc finger protein 653	protein-coding	6.59554670658239	7.0635811195164	6.49234169532565	6.59728808180774	7.19744587578134	7.08248937211089	6.9095263513675	6.87485957931604	0.448308769344016	0.0451134524052395	0.21721777912146
Merged-chr4-129577283-2	chr4	129577183	129577383	+	860.4166869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_182783, exon 2 of 2)	exon (NM_182783, exon 2 of 2)	1297.0	NM_182783	230766.0	Mm.20377	NM_182783	ENSMUSG00000050493	Fam167b	SEC	family with sequence similarity 167, member B	protein-coding	3.37961393743946	3.05408610131754	3.15675943967371	3.13903129140813	3.43505289388978	3.20468518022863	2.9517425344815	3.37811267323222	0.287468621290281	0.615428710411338	0.834461661846382
Merged-chr17-15498955-2	chr17	15498855	15499055	+	721.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013684)	promoter-TSS (NM_013684)	-679.0	NM_011185	19170.0	Mm.32912	NM_011185	ENSMUSG00000014769	Psmb1	AA409053|C81484|Lmpc5	proteasome (prosome, macropain) subunit, beta type 1	protein-coding	2.87760276865781	2.55134600576069	2.48112220721506	2.61286408614921	2.52321151365634	2.80215067150842	2.86610734685134	2.93206844722265	0.712604410782674	0.292651676015562	0.605032200967547
Merged-chr10-94689298-4	chr10	94689174	94689374	+	911.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015524)	promoter-TSS (NR_015524)	484.0	NM_029852	77048.0	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	4.7125790768388	4.72793394082474	4.49008752514169	4.46825907265764	4.72607293348944	4.24166771529245	4.04381114094706	4.16573139668146	-0.596954385496963	0.155993769649199	0.441868673088957
Merged-chr10-78367172-4	chr10	78367056	78367256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-15456.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	5.48516446041525	5.27634031781603	5.06767091883252	5.32084198829997	5.07148506809168	5.31142434612131	5.14442127343676	5.22980979840011	-0.206731825702413	0.486944977327025	0.760460233910227
Merged-chr7-31177356-4	chr7	31177247	31177447	+	917.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14989.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	4.31165694163759	4.28114237615106	4.17411491625103	4.05838976189131	4.46750547536451	4.14460740483368	4.72651824783052	4.17161660754133	0.489386013739723	0.228836214656477	0.537692962830798
Merged-chr4-133631170-4	chr4	133631066	133631266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 1 of 7)	intron (NM_001017968, intron 1 of 7)	2263.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	5.92823522917532	5.88608159493424	6.05144607934039	6.0832769071094	5.67685997592339	5.38083403463566	5.55922339379179	5.5550350753393	-0.721876059213565	0.00512369469489282	0.0483686292689358
Merged-chr4-136160313-4	chr4	136160228	136160428	+	880.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11946.0	NM_177733	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	3.76814059407397	4.11839205084557	3.8274759957928	3.800333196171	4.36554248965001	4.06170107147259	4.24474435644301	4.45202120860151	1.05928564377154	0.0118119993979312	0.0888630455152787
Merged-chr10-77371977-3	chr10	77371896	77372096	+	842.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024838, intron 1 of 11)	intron (NM_001024838, intron 1 of 11)	46277.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	3.54897275565595	3.31583288554186	3.17872601929164	3.25430946156623	2.91508064213391	3.09048890640746	3.28311932882235	3.34909097700165	-0.616830065846244	0.285939752272365	0.597560353111998
Merged-chr13-75845997-4	chr13	75845896	75846096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053108, intron 1 of 2)	intron (NM_053108, intron 1 of 2)	6110.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	7.33898059568405	7.77679129000039	7.66605186770321	7.65131167452635	6.93480516543233	6.89420114808683	7.03633194046801	6.72617786323063	-0.972330472835551	6.87454836025529e-07	2.48135637796456e-05
Merged-chr5-148551893-4	chr5	148551765	148551965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359201)	promoter-TSS (NM_001359201)	20.0	NM_001359200	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	6.18989445211451	6.39583409005767	6.26758437453839	5.29575356964051	6.59788525252256	6.69402032457342	6.32434936711025	5.6565599853912	0.422940086111541	0.220889697989648	0.528992255339651
Merged-chr1-165844765-6	chr1	165844677	165844877	+	649.222229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113391, intron 1 of 7)	intron (NM_001113391, intron 1 of 7)	56096.0	NM_001113392	12503.0	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	3.50044420700421	3.32757007086067	3.6647824693184	3.4451460762021	3.59459529088773	3.61752454403996	3.83737533427868	3.80769229889761	0.732249522723075	0.128661313350667	0.399110242438208
Merged-chr3-15156926-4	chr3	15156810	15157010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	175392.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	5.5557422612712	5.44376014662227	5.91329319609326	5.85686837521204	5.56368428950973	5.52610447528199	5.47305221984628	5.68313387830273	-0.255542999177498	0.356046765061107	0.662704502355483
Merged-chr13-67375773-4	chr13	67375676	67375876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001186)	promoter-TSS (NM_001001186)	-13.0	NM_001001186	408065.0	Mm.461583	NM_001001186	ENSMUSG00000078995	Zfp456	BC065418|Rslcan-13	zinc finger protein 456	protein-coding	8.11120112014427	8.09240543589942	7.5180659088888	7.76381106983618	8.28642487388054	8.27139785531079	8.29003907754736	7.93385309945334	0.401582017963045	0.0424333979418239	0.209137711681282
Merged-chr6-137570907-4	chr6	137570823	137571023	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271595)	promoter-TSS (NM_001271595)	86.0	NM_001271595	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	5.44079295305531	5.51858883242555	5.49238889295959	5.78624389196242	4.61633744221295	4.51787443594952	4.99121786836877	4.73209436618338	-1.64235375765014	5.53958172744894e-07	2.03642787944447e-05
Merged-chr18-9821413-3	chr18	9821313	9821513	+	809.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	113765.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	3.9206644263636	3.97704485176512	3.8363631750906	3.99040644239339	2.97702286550274	3.12280305368736	3.15087619862237	3.00606458092713	-3.76911892912821	1.49348570503047e-07	6.18410814417474e-06
Merged-chr6-65146543-4	chr6	65146436	65146636	+	849.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1806.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	4.38740566781726	4.1644468780601	4.12706468564761	4.59565142512605	4.40340463174643	3.85738265053334	4.10959504870166	4.07550765498102	-0.510090656486315	0.246990317221748	0.558168726560377
Merged-chr14-27186949-4	chr14	27186907	27187107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	RSINE1|SINE|B4	43014.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	5.83773116968789	5.78419935897059	5.95026569057971	6.01084480489555	5.7078879101461	5.94186552999982	5.4950960187985	5.81108837480861	-0.262600984897924	0.308429250983569	0.620793493346942
Merged-chr5-112210265-2	chr5	112210165	112210365	+	664.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045377)	TTS (NR_045377)	3502.0	NR_045378	75569.0	Mm.243721	NR_045377	ENSMUSG00000101683	1700028D13Rik	-	RIKEN cDNA 1700028D13 gene	ncRNA	2.2396167890248	2.31789625776923	2.38915174065387	2.03624155267826	2.52599522121439	2.56558968257562	2.69039631887992	2.58469062919089	2.14988922121435	0.00477689812887952	0.0459169253093201
Merged-chr14-7774144-3	chr14	7774069	7774269	+	659.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAG)n|Simple_repeat|Simple_repeat	-43788.0	NM_001081427	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	3.66457879520943	3.43001201765862	3.71347461260806	3.34776961636453	3.52065128614028	3.30807346982295	3.49427854018965	3.75766751305941	-0.0206409360228773	0.96810395757871	0.988669946242722
Merged-chr3-79002661-4	chr3	79002569	79002769	+	986.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142218.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	5.12544445456192	5.05496372345784	4.9238396903639	5.45964022439209	5.01055770376653	4.86254352854348	4.9361619436207	4.80602458632512	-0.516788636025932	0.12005466728013	0.383578919217719
Merged-chr6-87255886-4	chr6	87255780	87255980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_054041, exon 10 of 18)	exon (NM_054041, exon 10 of 18)	79895.0	NM_054041	69538.0	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	5.55715424614679	5.84361021932336	5.72239299158952	5.77639735674397	6.08153963324507	5.67702108704727	6.04700976408364	5.95201680448904	0.357489341796882	0.16169016156879	0.45065956654025
Merged-chr17-80127479-1	chr17	80127379	80127579	+	926.0	f0_c57.idr	promoter-TSS (NM_176963)	promoter-TSS (NM_176963)	8.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	4.55341046384879	4.73565069432816	4.23463895299742	4.59125458462502	4.53098930900324	4.46317072474759	4.75295275006307	4.59096193032169	0.0880490469341249	0.811210129173804	0.926883359837906
Merged-chr13-55249431-4	chr13	55249325	55249525	+	824.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008739, intron 5 of 22)	intron (NM_008739, intron 5 of 22)	39643.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	3.6666297475751	3.43436336819069	3.61071169273038	3.87441501204339	3.96374548164245	3.60633503743916	3.75749629800226	4.12300466205286	0.613709287054016	0.214825684689598	0.520815559865735
Merged-chr7-28378556-4	chr7	28378463	28378663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011756, intron 1 of 1)	CpG	665.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	7.63498956471005	8.16180849037007	7.51604157390891	6.84545296173106	8.11625089684601	8.38498572307429	8.05742809752187	7.89266637206774	0.653642384360892	0.01459983984518	0.102799683484031
Merged-chr15-80521883-2	chr15	80521783	80521983	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163189, intron 2 of 5)	intron (NM_001163189, intron 2 of 5)	38587.0	NM_001163189	383075.0	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding	3.12347228312889	2.91073363165466	2.88064796286541	3.24161897501482	2.87855450174971	3.11653918388109	2.9973881386598	3.00650161611426	-0.246700478930418	0.682217688470664	0.869682098720609
Merged-chr18-14682982-5	chr18	14682898	14683098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161369)	promoter-TSS (NM_001161369)	-84.0	NM_001161371	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	7.45296045976476	7.42494317034776	8.11485473920304	7.42166991036385	7.32247050282105	7.62199995888886	7.30645813236554	7.63729464592859	-0.206612978546779	0.362043789675456	0.667306442775501
Merged-chr6-7800240-3	chr6	7800140	7800340	+	980.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-44984.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	4.67583035423477	3.9369070124859	4.37617754598515	4.72393236587465	4.05260726729389	4.10876438722602	4.12710509300403	4.60488574807775	-0.544201030881908	0.230937716891727	0.540396396919272
Merged-chr1-34826090-4	chr1	34825998	34826198	+	930.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160235, intron 3 of 7)	intron (NM_001160235, intron 3 of 7)	16952.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	5.1009778185599	5.19597860240222	4.65823145357243	5.1746241096584	4.93864924217343	4.74789620074776	4.94642588977319	5.03438661118016	-0.270148537051088	0.417662516256669	0.711417605932264
Merged-chr9-37347773-4	chr9	37347693	37347893	+	909.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081429, exon 2 of 16)	exon (NM_001081429, exon 2 of 16)	599.0	NM_001081429	245902.0	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	4.10393579237982	4.4365391619639	3.74794624431589	3.46969201113168	4.92160218518942	4.825100221469	4.03374320245926	4.61602869684104	1.52791859641182	0.00236566634734532	0.0265928245321688
Merged-chr3-82333778-3	chr3	82333641	82333841	+	927.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24331.0	NM_001081230	213582.0	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	3.33002239458555	3.41614209142265	3.49896403246533	3.81024252893675	3.34460484224168	3.38039762956061	3.37662291856412	3.38734343531152	-0.590522731579386	0.266498770067551	0.578164752957072
Merged-chr16-62856496-4	chr16	62856395	62856595	+	805.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011173, intron 1 of 14)	intron (NM_011173, intron 1 of 14)	2188.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	4.22067218063036	4.05433769835553	4.12064538328226	4.46937673293776	4.47135630669364	4.69177198408237	4.60996625497714	4.31210152220991	0.652471722614023	0.104262018697701	0.355016562805378
Merged-chr10-59741707-4	chr10	59741571	59741771	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359267, intron 4 of 11)	intron (NM_001359267, intron 4 of 11)	39108.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	4.58462699476926	4.88525964171769	5.30383517723579	4.83280847618285	4.50959734087407	4.43613545980112	4.43289044698962	4.49555331294165	-0.971470770387669	0.00946218590670941	0.0758883302144979
Merged-chr2-160673626-3	chr2	160673538	160673738	+	644.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009408, intron 3 of 20)	MTD|LTR|ERVL-MaLR	27741.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	3.90310013133762	3.61268423704721	3.75285874041905	3.73042369298531	3.60339141612942	3.87325032944826	3.73764658934993	4.19535348530477	0.333709041216338	0.480847397198682	0.756163685244129
Merged-chr10-82629277-4	chr10	82629166	82629366	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011561)	promoter-TSS (NM_011561)	-572.0	NM_001358517	21665.0	Mm.284252	NM_011561	ENSMUSG00000034674	Tdg	E130317C12Rik|JZA-3|Jza1	thymine DNA glycosylase	protein-coding	4.50823267558473	4.46087180452039	4.22335789433857	3.91610038213647	4.56847343715704	4.91565665254319	4.68411964686262	5.13430177919535	1.230765905862	0.00204051473867827	0.0237400782256261
Merged-chr13-12473911-4	chr13	12473808	12474008	+	947.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133643, exon 6 of 6)	3' UTR (NM_133643, exon 6 of 6)	-12170.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	4.80736501744452	4.67499062293605	5.25767433857568	5.30691348926932	5.41005881962568	5.40025868119021	5.07788959710889	4.88510688939796	0.304881771199841	0.391612132391959	0.691333332627163
Merged-chr5-121196964-4	chr5	121196854	121197054	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5557.0	NM_011202	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	5.49882344748295	5.54208452636564	5.06970496637313	4.81331600134234	5.52820344511687	5.41592578627883	5.39182622600112	5.29912000257128	0.293527914544325	0.371762302696548	0.675721058891926
Merged-chr18-32389836-4	chr18	32389726	32389926	+	980.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	intron (NM_001360876, intron 1 of 17)	-11542.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	5.18312207196365	4.91768574287044	5.1840088214054	5.77858679445697	5.02726430430412	4.63472538335405	5.21898088391085	5.1487525805611	-0.556777713576706	0.131404222607412	0.403600524870218
Merged-chr10-40882374-6	chr10	40882313	40882513	+	939.154785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027879, intron 1 of 14)	intron (NM_027879, intron 1 of 14)	730.0	NM_027879	71713.0	Mm.46063	NM_027879	ENSMUSG00000038446	Cdc40	1200003H23Rik|EHB3|PRP17	cell division cycle 40	protein-coding	3.8937973479882	3.93149138371317	3.89437973152834	3.75040492675203	3.79636900855023	3.63182363773121	3.62217458918311	3.79485945918041	-0.427683621449666	0.349096620489991	0.656765556493198
Merged-chr14-58323327-4	chr14	58323217	58323417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	250631.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	5.71836011915283	5.64396883018455	6.02603444933112	6.14597995355909	5.33423915005593	5.52698539152802	5.6141194815132	5.61203312507248	-0.658134224530727	0.0189195817442165	0.123245286831716
Merged-chr16-11346377-4	chr16	11346264	11346464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 1 of 20)	intron (NM_028964, intron 1 of 20)	23460.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	6.65717804674261	6.6693880232337	6.58106891601308	7.06151332314729	6.36134357320604	6.43388445377679	6.44844352074503	6.54409540472702	-0.477857528641613	0.0346367635282503	0.18424708102364
Merged-chr4-35097066-4	chr4	35096956	35097156	+	996.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-54999.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	6.16547975895892	5.76552961795769	6.20137230313729	6.32859513942764	5.14407974386285	5.31994594344032	5.56708352837087	5.27973274182938	-1.35268843267403	2.08279906607243e-06	6.7849681795867e-05
Merged-chr6-29485279-4	chr6	29485170	29485370	+	973.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029985, intron 32 of 37)	intron (NM_001029985, intron 32 of 37)	13833.0	NM_001145360	668210.0	Mm.420607	NM_001145360	ENSMUSG00000090685	Gm9047	EG668210	predicted gene 9047	protein-coding	4.38849492717753	4.38120548406873	4.0583975141213	4.1518227964771	4.3364275295242	4.71128552488848	4.59565808787362	4.15830709263396	0.51676565103535	0.198376842568041	0.499916105432732
Merged-chr4-140688479-3	chr4	140688385	140688585	+	676.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12988.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	3.44120158587862	3.16491316536695	3.44168230395328	3.24243413774852	3.43710424031561	3.32081935912741	3.42778123593192	3.43973814338256	0.314878545208863	0.541613651274824	0.793339055934698
Merged-chr7-41499881-2	chr7	41499781	41499981	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033530)	promoter-TSS (NM_001033530)	9.0	NM_001033530	101835.0	Mm.370336	NM_001033530	ENSMUSG00000074166	AW146154	AI451288	expressed sequence AW146154	protein-coding	4.77592454955746	4.60159315055654	5.37358956523779	5.03179632457036	4.5938346922702	4.91318697148263	4.7540278488266	4.47481538607194	-0.590925547491058	0.115047653352281	0.37538953609823
Merged-chr18-84683754-4	chr18	84683665	84683865	+	800.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 1 of 11)	B2_Mm2|SINE|B2	-1706.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	3.64453084686284	3.98863735297775	3.98191322351019	3.53383032087858	4.06678140707935	4.00251958369289	4.34350880398413	4.36194203323396	1.10863563018546	0.0140418968530687	0.100229460098734
Merged-chr10-116726229-4	chr10	116726127	116726327	+	982.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045345, intron 1 of 2)	intron (NR_045345, intron 1 of 2)	2950.0	NR_045345	72286.0	Mm.396207	NR_045345	ENSMUSG00000100198	1700030O20Rik	-	RIKEN cDNA 1700030O20 gene	ncRNA	4.16730691323785	4.49118946284004	4.05393079573746	4.22885806650729	4.91920640348436	4.68021101040171	4.87845804888996	4.93026685463825	1.33768973018445	0.000258251022379755	0.00448890098216571
Merged-chr7-97843357-4	chr7	97843254	97843454	+	911.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357363, intron 1 of 14)	intron (NM_001357363, intron 1 of 14)	415.0	NM_011035	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	4.53139518415911	4.6790654025906	3.9368236498826	4.09993240409861	4.45418728480286	4.2947359291802	4.65958837560218	4.93434220168103	0.595211686701144	0.170303821735047	0.463434481296744
Merged-chr17-28433236-4	chr17	28433134	28433334	+	938.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 3 of 10)	B4A|SINE|B4	52915.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	4.92889736905836	4.43782478026371	4.82662647884254	5.00742127210885	4.59594398695435	4.68043718490753	4.9379585047542	4.74977106146764	-0.174970986352807	0.626416726441089	0.840532285922866
Merged-chr10-21976552-4	chr10	21976457	21976657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 3 of 13)	intron (NM_001161845, intron 3 of 13)	-2115.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	7.55122494100659	7.23094791090549	7.79242043296634	7.59549946007913	6.7916319344124	7.08682028840694	7.32233462144831	6.91752477825075	-0.69985904226402	0.00119419824971085	0.0155140385332817
Merged-chr3-87362434-3	chr3	87362356	87362556	+	802.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 2 of 5)	Lx8|LINE|L1	4575.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	3.14850622503596	3.04643338134109	3.60529946448112	3.37933077669042	3.14541801180293	3.13035350113697	3.0762053899491	3.08501230110562	-0.779208495175475	0.180708221383224	0.47708284150575
Merged-chr15-38374897-3	chr15	38374803	38375003	+	768.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74192.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	3.40593599388633	3.28102943125639	3.40640878242026	3.43496127929703	3.43086823774262	3.07946872669464	3.10168332611503	3.40449671709137	-0.407083236980284	0.459416656682382	0.741935750561435
Merged-chr4-121004849-4	chr4	121004728	121004928	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	12419.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	4.21901659127355	4.44513286482648	3.77185882921882	3.91233647426691	5.02897298757111	4.52886025175335	4.24720970680949	4.16860314687502	1.02717441679167	0.0284740177461525	0.161894089715903
Merged-chr8-13200559-4	chr8	13200445	13200645	+	876.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025768)	promoter-TSS (NM_025768)	79.0	NM_025768	66790.0	Mm.34901	NM_025768	ENSMUSG00000038515	Grtp1	5430401C05Rik|C81211|Tbc1d6	GH regulated TBC protein 1	protein-coding	4.16149964854579	4.16890358373998	4.47270662205373	4.52110012829755	4.14958982305541	4.38612754992827	4.56362994311991	4.3885849060811	0.0485825850394752	0.903350496002472	0.964259128403537
Merged-chr4-139214124-4	chr4	139214022	139214222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	20011.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	6.61853879479815	6.82518734528643	6.97784366828361	7.19616498159158	7.45971107993987	7.29000151950727	7.30029073538446	7.10819607862482	0.494485070409985	0.0214483240585339	0.134085319242654
Merged-chr11-118455716-5	chr11	118455659	118455859	+	886.8599849999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045902)	promoter-TSS (NR_045902)	-764.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	3.0517919619839	3.05435976410107	3.32574803672185	2.99781501337066	3.31138443022061	3.09857622094057	2.84725863923676	2.92284394300632	-0.172062166471349	0.7775425670853	0.913253170065039
Merged-chr2-59438094-4	chr2	59438006	59438206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46547.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	5.04259922856044	4.72272301846678	4.97604834046845	5.10918280844401	5.1027346715765	4.88532809571947	4.88156915869454	5.16471795118495	0.0787870796833671	0.807922750821559	0.925936423925286
Merged-chr17-28736780-2	chr17	28736680	28736880	+	912.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168508, intron 8 of 11)	intron (NM_001168508, intron 8 of 11)	-32537.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	3.58867458359943	3.16726226059103	3.15784969803798	3.24860135756221	3.27450273225748	3.45098075993478	3.26774996789105	3.21874847970132	0.0213509663172688	0.968703805955189	0.988762939668968
Merged-chr6-116681670-4	chr6	116681571	116681771	+	952.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7835.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	5.22508146013311	4.90239788769673	5.3349421369157	5.20306188929401	4.75610609338442	4.70438914487292	4.76542512263916	4.97120503865684	-0.736268431721553	0.0242198085833732	0.145369909364695
Merged-chr18-67768513-4	chr18	67768341	67768541	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6435.0	NM_001360934	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	3.93299022109758	4.18329361127454	4.33877772216179	3.89738401765592	3.82620341477217	4.2552917781441	4.11130915586984	4.03288518654676	-0.088549860474956	0.840142425213994	0.939232419857578
Merged-chr10-84443552-4	chr10	84443450	84443650	+	898.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3079.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	4.68881551597853	4.55342037960447	4.76340411540883	5.00123694010731	4.33233060948888	4.52186734246833	4.70460481123128	4.68649392593905	-0.464220208652394	0.207461536109907	0.511447929091922
Merged-chr7-128333115-4	chr7	128333008	128333208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34977.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	6.77239460051189	6.84152135977111	6.47582603119082	6.64011614280604	6.78598174999313	6.61740452842418	6.54411763917928	6.79635123753254	0.00855047551442473	0.967654138827356	0.988556045979739
Merged-chr11-120938970-4	chr11	120938844	120939044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6072.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	6.4574018430324	7.23409499433178	6.47641242308565	6.4502684233209	6.75617305198772	7.07099725270305	6.74063839828972	6.32139261648146	0.0650691920016052	0.815706059445518	0.928948539331102
Merged-chr2-44313827-3	chr2	44313713	44313913	+	970.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 12 of 14)	intron (NM_001301831, intron 12 of 14)	-248489.0	NR_040622	320872.0	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	3.66582791128697	3.43347593996463	3.82224354333289	4.22807922410616	3.57560603764799	3.78464726513799	3.85343484255776	3.66432717222064	-0.342856592558926	0.511144547287394	0.775198670343823
Merged-chr7-126596091-3	chr7	126595966	126596166	+	957.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1156.0	NM_145636	246779.0	Mm.222632	NM_145636	ENSMUSG00000044701	Il27	IL-27|IL-27p28|Il30|p28	interleukin 27	protein-coding	3.73948596757277	4.01372229128206	3.74001585635463	2.9396287755695	4.54709962650762	4.87013604479373	4.13936760408096	3.73787250374036	1.82257988716545	0.00194283388942242	0.0228917353774538
Merged-chr8-68175284-4	chr8	68175199	68175399	+	815.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR25A|LTR|ERVK	-101229.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	4.91068768128984	4.23485531921964	4.4232462365659	5.09667891521675	4.2248350901785	4.0356872072086	4.22227154830143	4.08277202543311	-1.3549811776638	0.00215744196976593	0.0248004783536771
Merged-chr7-24389645-4	chr7	24389531	24389731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9997.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	5.82337600223285	5.51772054065054	5.51650443003569	5.65488174915479	7.08592307424667	7.05158536323664	7.17569864865933	6.83334011860417	2.08081167379444	5.4585016656593e-20	1.82408774676039e-17
Merged-chr2-156181518-4	chr2	156181427	156181627	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-1289.0	NM_133242	170791.0	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	5.35788068489121	6.16725941301016	5.86563383387597	5.46573123519368	5.36835990963554	5.26433483682641	5.09543379348403	5.50188586292108	-0.746432105046603	0.0215983766233654	0.134725339556088
Merged-chr4-155668701-2	chr4	155668601	155668801	+	914.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001256107, exon 1 of 20)	5' UTR (NM_001256107, exon 1 of 20)	553.0	NM_001256108	76580.0	Mm.235738	NM_145124	ENSMUSG00000029060	Mib2	2210008I11Rik|Zzank1|skd	mindbomb E3 ubiquitin protein ligase 2	protein-coding	3.2994589442373	3.00879501320791	3.81576066901699	3.01286671924019	3.28215218214316	3.75494776067094	3.5160630695737	3.5811056615017	0.725657643957467	0.226895007235911	0.535593906991684
Merged-chr5-18014390-4	chr5	18014279	18014479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	51809.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	8.17663033934603	8.10401254971937	8.41529722080033	8.4356975441791	8.13678974687907	8.42083183029007	7.97766221974596	8.0514051166849	-0.176739770909042	0.325551000643511	0.637107120396079
Merged-chr9-54566961-4	chr9	54566861	54567061	+	765.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6882.0	NM_019686	56506.0	Mm.42192	NM_019686	ENSMUSG00000037493	Cib2	2810434I23Rik|AI449053	calcium and integrin binding family member 2	protein-coding	4.06758419533892	3.90834387075157	4.06818359699565	4.15690735368886	4.12024882518408	4.45973657612006	4.34996177519358	3.85497609625317	0.389635349318802	0.363835855083078	0.668839677917313
Merged-chr1-75142692-4	chr1	75142528	75142728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305232)	promoter-TSS (NM_001305232)	83.0	NM_026977	69171.0	Mm.28193	NM_026977	ENSMUSG00000033159	Cnppd1	1810031K17Rik|AU043960	cyclin Pas1/PHO80 domain containing 1	protein-coding	7.20231879922774	7.09891944144584	7.89462094871558	7.1512141605333	7.18219975708084	7.4035724577442	7.32713023103557	7.4734830358295	-0.0349979224836417	0.881183604778304	0.955323551968851
Merged-chr13-113795243-4	chr13	113795109	113795309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	701.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	4.8137920543797	5.02061254416665	5.07538582439059	5.37534338610723	5.05124971775856	4.99344220312488	5.01680287914581	5.56659547421354	0.136716253225524	0.691520910051559	0.87454056920491
Merged-chr1-193876553-4	chr1	193876439	193876639	+	841.337524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	346220.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	4.16321447939781	4.4509346132293	4.89180580880568	4.99367703120384	4.31705544739285	4.2918238427926	4.51779324919184	4.61472447168893	-0.532701314840224	0.203644838180496	0.506613866099872
Merged-chr10-61451726-4	chr10	61451632	61451832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010124, intron 1 of 2)	intron (NM_010124, intron 1 of 2)	937.0	NM_010124	13688.0	Mm.259516	NM_010124	ENSMUSG00000020091	Eif4ebp2	2810011I19Rik|4E-BP2|AA792569|BC010348|PHAS-II	eukaryotic translation initiation factor 4E binding protein 2	protein-coding	6.49214908458107	6.36969265528668	6.01163414416133	6.57732114664332	6.30908930667139	6.3427508342223	6.37779607107363	6.18215907819231	-0.133164529869421	0.57506134120675	0.81272502373833
Merged-chr19-34607483-2	chr19	34607383	34607583	+	793.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005858)	promoter-TSS (NM_001005858)	-474.0	NM_001005858	667370.0	Mm.271850	NM_001005858	ENSMUSG00000062488	Ifit3b	I830012O16Rik	interferon-induced protein with tetratricopeptide repeats 3B	protein-coding	3.71054421483774	3.72855469890821	3.1581074916831	3.02647433444171	3.86493539077901	3.83263666566965	3.64423466885436	3.75810011542747	1.0551789812891	0.0606381485926396	0.260152866618826
Merged-chr16-30008702-4	chr16	30008612	30008812	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033631)	promoter-TSS (NR_033631)	45.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	4.92040020944157	4.90215922777513	5.64995593744235	5.98854581001584	4.87524332688068	4.64936438758873	5.14477260603817	5.26046782043433	-0.843913395280158	0.037814679390898	0.194396292385146
Merged-chr4-55776649-2	chr4	55776549	55776749	+	784.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-244174.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	2.85888186973814	2.65489436042875	2.9254664542001	2.99365085262787	3.02839974530662	3.03456500091368	3.20029261373973	3.26274997081069	1.07692595903183	0.079169682238643	0.304474757513744
Merged-chr14-75017517-4	chr14	75017386	75017586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198642, intron 1 of 13)	intron (NM_198642, intron 1 of 13)	1459.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	5.91711399111434	6.10696460497277	5.89468944069164	6.50088226545836	5.88094512472979	5.86826795435939	6.21206106079524	5.76632118598899	-0.326482858647937	0.238557687865889	0.548947761743878
Merged-chr9-65031600-4	chr9	65031489	65031689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028906)	promoter-TSS (NM_028906)	-869.0	NM_028906	74388.0	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	6.01563671894809	6.21633936313641	6.10072375471771	5.28708076611714	6.20723471058474	6.14890131413318	6.22140803542491	6.13631042674711	0.380637630475468	0.195361815068044	0.496169936299446
Merged-chr16-36627036-4	chr16	36626943	36627143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 2 of 7)	intron (NM_019388, intron 2 of 7)	39034.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	7.89466064678637	8.06460326908826	8.07938661163317	8.00655067085096	7.93391886843232	7.75970480993436	8.3053225981721	7.7276317261988	-0.0758085381582117	0.688073345617867	0.872614457715549
Merged-chr9-95641333-4	chr9	95641233	95641433	+	971.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 2 of 8)	intron (NM_029620, intron 2 of 8)	3705.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	4.84728583072385	4.81597505827037	4.47752038901133	4.98050871046533	5.00493829326734	4.51008368352757	4.71384356146175	5.13107146497976	0.129931364264372	0.723196354028337	0.889517768850578
Merged-chr10-121316020-3	chr10	121315912	121316112	+	737.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361015, intron 2 of 12)	intron (NM_001361015, intron 2 of 12)	-4616.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	3.27920874499782	3.22384610405764	3.39711809232641	3.27997159623609	3.29775952279445	3.77020891119317	3.26786511180748	3.50280601809911	0.60480346481442	0.252563280237687	0.563831442856552
Merged-chr2-126497002-4	chr2	126496912	126497112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 1 of 27)	intron (NM_001359975, intron 1 of 27)	2835.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	6.75285074745484	6.76162165244569	6.69506258633613	6.96135564667514	6.56905765450739	6.82547649496846	6.70529028568154	6.79170355052748	-0.127637032369317	0.534651035870906	0.789286995820758
Merged-chr17-35186165-7	chr17	35186061	35186261	+	990.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010734, intron 3 of 3)	intron (NM_010734, intron 3 of 3)	2279.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	4.95913591324802	4.84850317176025	4.8940597249051	4.7669712007197	4.71465425459031	4.67853660588047	4.52585370740097	4.74780058047964	-0.396791913692339	0.237296892424063	0.547488104303016
Merged-chr2-34779584-7	chr2	34779500	34779700	+	958.657166	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 7 of 7)	intron (NM_145522, intron 7 of 7)	7510.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	5.09088371142051	5.71809720966763	4.43231981155945	3.95148522456785	5.23498017409082	5.72144086458535	4.77877380828904	4.62666195733471	0.309965852773725	0.699647416137629	0.878885016610616
Merged-chr8-122405263-4	chr8	122405155	122405355	+	896.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029993, intron 9 of 18)	intron (NM_001029993, intron 9 of 18)	-16765.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	4.14611770100153	4.86166078490075	4.71405037296931	4.32129509673554	4.32687595509317	4.61445777339964	4.85456193831703	4.19769336304466	-0.0401049091780599	0.925277359762528	0.972442196404162
Merged-chr11-49983077-4	chr11	49982995	49983195	+	845.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4b|LINE|L1	-42236.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	3.41586323138175	3.54531080323764	3.28783854933905	3.40535992335672	3.72909312277039	3.99857230606854	3.40396813347697	3.73812519365568	0.993605311048673	0.0485053053751191	0.227327007253554
Merged-chr1-182282753-4	chr1	182282647	182282847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360783)	promoter-TSS (NM_001360783)	54.0	NM_007853	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	6.76274606267082	7.0898477161946	6.65646667608776	6.68807434163853	7.05589138040967	7.07949389215125	6.8145276309146	6.93713143577713	0.236571520152661	0.258715943556576	0.570489393947544
Merged-chr3-20017742-4	chr3	20017636	20017836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 8 of 16)	intron (NM_080634, intron 8 of 16)	17574.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	6.38408385288123	6.31084346253312	6.61004017582342	6.34571387789544	6.35862186524804	6.57818507737583	6.42062431939011	5.86760763096957	-0.12103862589244	0.623370013132389	0.838941930944268
Merged-chr10-83337495-3	chr10	83337402	83337602	+	819.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177388, intron 1 of 10)	CpG	315.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	3.45672374818102	3.23254976091631	3.653170209928	3.45466272636812	3.45147059811086	3.33704924408648	3.21481809796893	3.28578469579004	-0.438683032152149	0.410113708255347	0.705517296014775
Merged-chr13-56422503-4	chr13	56422412	56422612	+	788.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15843.0	NM_177809	328258.0	Mm.482177	NM_177809	ENSMUSG00000021509	Slc25a48	AU042651|E230025K15	solute carrier family 25, member 48	protein-coding	4.00222516687464	4.34963046656811	3.90453475989047	3.68646178410821	3.75387313942606	3.86237968514107	3.98535626182601	4.04677349676779	-0.242776095367654	0.604611171882286	0.828509474255204
Merged-chr6-34005889-3	chr6	34005791	34005991	+	770.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23557.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	3.09116213115834	3.20093820649317	3.32547931725832	3.16158380121945	3.04803226559147	3.32595707091157	3.14288549116875	3.37586743132626	0.11092081806047	0.840310017927186	0.939246943014465
Merged-chr9-107709950-4	chr9	107709840	107710040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011349, intron 1 of 17)	CpG	535.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	5.74334173313413	5.33477872372884	5.59537070516823	5.56196344007378	5.55039032619855	5.71626341819459	5.54073992041237	5.69258586213858	0.10219177151821	0.703905961853363	0.880925455128412
Merged-chr3-36532167-4	chr3	36532082	36532282	+	885.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10737.0	NR_040411	100503068.0	Mm.389423	NR_040411	ENSMUSG00000085007	Gm11549	-	predicted gene 11549	ncRNA	4.06169627456629	4.30300415461506	4.16235148959534	4.43560981040304	4.20440824936854	4.42651809986372	4.28018269316567	4.29669670204409	0.0832936977807717	0.834276512084618	0.936772851882302
Merged-chr13-92940807-3	chr13	92940695	92940895	+	771.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96008.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	3.00135244564781	2.9156854253458	3.07442797532367	2.74037226378152	4.06658599975269	3.32793418893168	3.5814168453783	3.59608399441442	2.86851152234358	9.53716757812516e-07	3.36062401506619e-05
Merged-chr16-8862483-4	chr16	8862374	8862574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32374.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	5.89331326701751	5.55614090305724	5.43915285245501	5.6666483249081	5.2539610197433	5.49464413467136	5.19372774944352	5.40617466111074	-0.545967881420425	0.0550945575099597	0.24532846474829
Merged-chr3-30601360-4	chr3	30601260	30601460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030557)	promoter-TSS (NM_030557)	-727.0	NM_001289623	80732.0	Mm.200378	NM_030557	ENSMUSG00000037730	Mynn	2810011C24Rik|AA415053|AI661031|AW049392|Mynr|SBBIZ1	myoneurin	protein-coding	5.99514463041356	5.98644357404963	6.05975813837262	5.39159297762742	6.30164170006354	6.01124817083614	5.87600523301397	6.28142687890206	0.424938094756582	0.134036837607097	0.407670811685954
Merged-chr12-102430124-5	chr12	102430094	102430294	+	949.048767	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	CT-rich|Low_complexity|Low_complexity	9619.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	4.65147125589304	4.55660288129831	4.26379989921908	4.09388258578796	4.00253979018603	4.19422173838218	4.0513021559812	4.47000993115813	-0.520099606318188	0.227195916713896	0.53590860802553
Merged-chr6-29762727-3	chr6	29762625	29762825	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5718.0	NM_021414	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	3.66946799494923	4.13180711406059	4.10542401995202	3.9755017952493	3.62947030548747	3.7885677948769	3.81625071113912	3.60931778508981	-0.800397817452275	0.0867533903513304	0.321230794975672
Merged-chr6-146209192-4	chr6	146209080	146209280	+	907.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	275058.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	4.15889938784123	4.52569066695486	4.70667880222451	4.98135575312	4.16538560034227	3.99393723743951	4.46187602372815	4.47974087867543	-0.807742971435627	0.0630870406958025	0.26641782673904
Merged-chr12-85192854-4	chr12	85192761	85192961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15548.0	NM_008827	18654.0	Mm.4809	NM_008827	ENSMUSG00000004791	Pgf	AI854365|PIGF|Plgf	placental growth factor	protein-coding	5.48645248465186	5.71411546959707	5.72208167587354	5.71610467236056	5.55204373661341	5.63377259051077	5.43153543617795	5.5118543136681	-0.230206998340017	0.382960049624228	0.684806264846199
Merged-chr16-97462996-4	chr16	97462896	97463096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010846)	promoter-TSS (NM_010846)	-90.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	6.32185874423786	6.02322026183413	6.42993151875462	6.64877905019424	6.44619294970805	6.32089375085499	6.60052888942289	6.31845535026648	0.0565757226030846	0.817087169986663	0.929658690416891
Merged-chr10-37138933-4	chr10	37138805	37139005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008538)	promoter-TSS (NM_008538)	21.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	7.33087235779733	7.34576730586507	7.00080985099092	7.27953862628853	7.38619086427416	7.22941726880225	7.39182875741407	6.82842015249999	-0.0212753789095564	0.919325042146615	0.970285021467879
Merged-chr6-122599898-4	chr6	122599816	122600016	+	796.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134391, intron 2 of 7)	RSINE1|SINE|B4	2528.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	4.26849671642197	3.74415307845533	3.59289257362556	3.16751023302759	3.93460675727235	3.77194949923529	3.63621818423653	3.7573879168789	0.0786968232726633	0.888056046878498	0.95799613184499
Merged-chr2-133458900-4	chr2	133458788	133458988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93271.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	7.02890713294335	7.48693328668024	7.41329286629967	7.29161478922966	7.22639995301147	7.24532384995352	7.3089096450517	6.8902247376554	-0.187973938894763	0.354282705626114	0.661031778977135
Merged-chr14-55735996-4	chr14	55735888	55736088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9696.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	6.9278199091673	6.56552797879309	7.1954426028915	7.02602718837064	6.72443409929281	6.5882626583822	6.99278208169677	7.05857516479343	-0.133013921502228	0.563911085713886	0.806530977756921
Merged-chr12-111401648-3	chr12	111401546	111401746	+	953.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5163.0	NM_001101503	380787.0	Mm.125602	NM_001101503	ENSMUSG00000087075	Lbhd2	A230065H16Rik|Gm898|Lbh2	LBH domain containing 2	protein-coding	3.45998829021208	3.953326690306	3.46038857194371	3.41375493976515	4.17294082100515	3.70981211425394	4.07552841649398	4.28522883698509	1.39781895766215	0.00476036668725804	0.0458260941888477
Merged-chr9-85577970-4	chr9	85577853	85578053	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	171381.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	4.12631017998486	3.7502058293531	3.94675447061419	3.88254652578011	3.91302339075201	3.96622244003027	3.83045575564855	4.08193544880433	0.062052653512953	0.886691859426816	0.957459872298027
Merged-chr3-95655751-4	chr3	95655666	95655866	+	963.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2955.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	5.03414663068313	4.77656456563777	4.59548664754239	4.98462602945107	5.01561935513765	5.1750641016268	5.38515669431013	5.30445855721597	0.674223678456716	0.0388698440046259	0.198032827027791
Merged-chr13-64306296-4	chr13	64306186	64306386	+	958.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025370, intron 4 of 5)	intron (NM_025370, intron 4 of 5)	6424.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	4.90935200833339	4.29480765111609	5.09539764004557	4.72539219004149	4.65823476976006	5.04791326095937	4.74668857848398	4.37985542924109	-0.11626782882592	0.769539682114274	0.909742530773464
Merged-chr2-180256421-3	chr2	180256309	180256509	+	954.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025587)	promoter-TSS (NM_025587)	-970.0	NM_025587	66481.0	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	3.59244622952139	3.88285718160506	3.87137662796911	3.12851832122865	4.05702529797249	3.94378380134949	3.85450043367069	4.25557132296239	1.11116187779356	0.0329916562889437	0.178263759061306
Merged-chr13-29985659-1	chr13	29985559	29985759	+	549.0	f0_balb.idr	exon (NM_010093, exon 1 of 7)	exon (NM_010093, exon 1 of 7)	404.0	NM_010093	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	3.98315317159742	3.82155152279738	3.61890700672713	3.71702481276857	4.02520175825916	3.96053440949241	3.66386159909762	4.02579837860085	0.407140002589055	0.368810413653092	0.673241107398681
Merged-chr15-88868013-4	chr15	88867931	88868131	+	952.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	5837.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	4.7461080242183	5.06707933006959	4.58429755887171	4.31724923414736	5.02602764289149	4.92067916531327	4.56341766832557	4.85331117839333	0.328443663098421	0.389128811973045	0.689374802932542
Merged-chr11-114669130-4	chr11	114669017	114669217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048058, intron 2 of 3)	CpG-2790	336.0	NM_001048058	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	5.8675095070537	6.32126755600826	5.65505888434999	5.82831965617552	6.22702913312786	6.32853947683205	6.17933161431659	6.20675889415554	0.453498265667665	0.0771697709968785	0.300367540763609
Merged-chr6-3427287-3	chr6	3427182	3427382	+	930.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27711.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	4.13980143880954	4.15055586345314	4.05002019451001	4.02525188227829	4.43110591651413	3.5885024500766	3.88543380671039	3.89895700777135	-0.222521390271045	0.645259703638416	0.850810862839743
Merged-chr9-123498099-4	chr9	123498016	123498216	+	775.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013860, intron 1 of 7)	intron (NM_013860, intron 1 of 7)	19415.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	3.74844291379682	3.98592489181886	3.69311107879745	4.15125358008912	3.79544435265269	3.69048453653534	4.06516969603928	3.85169435650153	-0.187921957432885	0.689443825032717	0.873403492302557
Merged-chr2-158175193-4	chr2	158175111	158175311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16797.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	6.88725086995889	6.65990503725946	7.11299510088611	6.66626574057692	6.58847263050986	6.2640763176421	6.92855262570342	6.89644618017575	-0.19872921134954	0.412198601298915	0.707394257928814
Merged-chr19-12006202-6	chr19	12006077	12006277	+	996.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30563.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	3.58763023383052	3.40441840253283	3.30263063731184	3.5379871669727	3.31009011835853	3.41629891681077	3.52154963837948	3.86051691924185	0.243165011924082	0.642482600230098	0.849202796586536
Merged-chr14-75751244-4	chr14	75751144	75751344	+	871.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177381, intron 1 of 22)	intron (NM_177381, intron 1 of 22)	3249.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	3.51108033825266	3.94405768369428	3.81993143939995	3.86545732440956	4.35877456283107	4.14800710462198	4.18049534344614	4.02155369045896	1.02762801452075	0.0207927224703559	0.13146253266277
Merged-chr7-19320149-4	chr7	19320039	19320239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10094.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	8.64924667365537	8.79058448478875	8.4449867147289	8.42057443414537	8.59673312145481	8.73228908449607	8.67538538378378	8.41856002585788	0.0346834354451351	0.835694410536834	0.937516254002898
Merged-chr6-55203783-4	chr6	55203678	55203878	+	947.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142781, intron 1 of 17)	intron (NM_001142781, intron 1 of 17)	395.0	NM_001142781	330323.0	Mm.268997	NM_177883	ENSMUSG00000038022	Mindy4	C330043M08Rik|Fam188b|Gm1406	MINDY lysine 48 deubiquitinase 4	protein-coding	4.34919312726477	4.52807538918637	4.80922905140516	4.59443814081446	4.89299725220011	4.66930583207137	5.19674478717526	4.34723352307652	0.498615290679741	0.199935795363072	0.50185984431534
Merged-chr5-140617956-4	chr5	140617836	140618036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10595.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	8.66372952981318	8.56502877432149	8.7238237469476	8.58666987162273	8.27575604278592	8.31630241257094	8.4509380210799	8.36557376251977	-0.355422942702285	0.0163952219254684	0.111813308559252
Merged-chr7-121333157-4	chr7	121333042	121333242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-59154.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	5.97331713255859	5.9493338652394	5.83699355947365	5.59211348412479	5.88419198842948	6.05991831886617	6.00691455198251	6.15140502124113	0.309596232678944	0.221502945118562	0.52953443039545
Merged-chr12-100568259-4	chr12	100568162	100568362	+	886.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153587, intron 14 of 17)	intron (NM_153587, intron 14 of 17)	-47440.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	4.26464779302142	4.74479232677084	4.68803215229105	4.70791782556897	4.36221366939862	4.17533395861483	4.8004798809902	4.44851809260086	-0.345622073948261	0.383553082280963	0.685436225048373
Merged-chr15-79941141-4	chr15	79941033	79941233	+	860.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8487.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	4.54372461029649	4.47248271545797	3.87097364415283	3.87123903411942	4.70267785888086	4.471404788684	4.44606965469509	4.33872316069972	0.661891770738535	0.130489400592954	0.402128252667253
Merged-chr15-80264362-4	chr15	80264266	80264466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175109)	promoter-TSS (NM_175109)	-60.0	NM_175109	66538.0	Mm.39485	NM_175109	ENSMUSG00000051518	Rps19bp1	2510038A11Rik|AI604923|S19BP	ribosomal protein S19 binding protein 1	protein-coding	6.706024547525	6.58452494869337	6.39360022013397	6.80159949387002	6.63367460182405	6.69509887309395	6.79753419551337	6.62721678700046	0.0643263162229703	0.762220840721729	0.906834880352543
Merged-chr3-90373627-3	chr3	90373521	90373721	+	941.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16317.0	NM_001316688	26568.0	Mm.45519	NM_011988	ENSMUSG00000027932	Slc27a3	Acsvl3|FATP-3|FATP3|Vlcs-3	solute carrier family 27 (fatty acid transporter), member 3	protein-coding	3.43656930186854	4.20506373597876	3.36908643895003	3.96052666991121	3.73253577206948	3.68095093376844	3.86668802811374	3.92756416848344	0.0207657997686068	0.969501830937467	0.98900997240126
Merged-chr18-67249185-4	chr18	67249081	67249281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3351.0	NM_001357518	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	6.6126848875084	6.58509040184046	6.26636857856062	6.65060098003912	6.52588483012631	6.31874441496892	6.56490348030778	6.51464059041776	-0.0862597642131874	0.693771140162701	0.875550716931276
Merged-chr9-118662696-4	chr9	118662605	118662805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 7 of 27)	intron (NM_133721, intron 7 of 27)	-48987.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	8.85799844008228	9.02051777531417	9.00984600448322	9.00309134032954	8.66748828736404	8.8524166717805	9.01053973981464	8.80205513904713	-0.173834274338533	0.248873390021437	0.560091027834067
Merged-chr1-39367837-4	chr1	39367780	39367980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252218)	promoter-TSS (NM_001252218)	29.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	7.72501934049388	7.94602897144165	7.72631917823493	7.50068746470623	7.88951749631787	7.88735795090058	8.03479383115478	7.77691813733825	0.225998423289202	0.209413219282032	0.513940748725158
Merged-chr4-148626997-4	chr4	148626877	148627077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145556)	promoter-TSS (NM_145556)	19.0	NR_027864	230908.0	Mm.22453	NM_145556	ENSMUSG00000041459	Tardbp	1190002A23Rik|C85084|TDP-43|Tdp43	TAR DNA binding protein	protein-coding	7.0094540590441	7.24297411607812	7.08348654083323	6.52207553307809	7.18483545814204	7.35079102017339	6.98763266080931	6.88798662592958	0.187281128253386	0.4286603900692	0.71961368508163
Merged-chr5-62815955-4	chr5	62815863	62816063	+	754.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 1 of 8)	AmnSINE1|SINE|Deu	2140.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	4.39787290459012	4.4063782891126	4.08806433950094	4.49292630634201	4.15841124526321	4.26241881488352	4.11975812776116	3.9261451630834	-0.604435286302801	0.140032484295379	0.416132430781438
Merged-chr5-125386006-2	chr5	125385906	125386106	+	914.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019639)	TTS (NM_019639)	4011.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	3.64434602833481	4.15432950036364	3.30561808548566	2.6158177512561	3.56369002155069	3.48885343698113	3.41439504930014	3.16933110074538	-0.471196144892442	0.513579668177975	0.776599245384027
Merged-chr2-60211906-4	chr2	60211805	60212005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020575, intron 1 of 9)	intron (NM_020575, intron 1 of 9)	1969.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	5.33013403522833	5.33393896167756	5.23921489242288	5.33613070042111	5.27698910423714	5.47432334107416	5.18181735241777	5.35651724224833	0.0164895120476082	0.953502152175589	0.983444766711298
Merged-chr19-53141441-4	chr19	53141341	53141541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164101, intron 1 of 13)	intron (NM_001164101, intron 1 of 13)	998.0	NM_001164101	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	5.51180309122831	5.11817068347404	5.64638160630921	5.87287748529298	5.42830449012005	5.76910718188169	5.56636170188484	5.80826769613151	0.107697882631102	0.726343400553962	0.891034932051019
Merged-chr19-9140561-3	chr19	9140485	9140685	+	852.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-5019.0	NM_025610	66514.0	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	3.40289384866369	3.38186501725507	3.25136543669638	3.24931722090597	2.86383081806661	3.05877903979981	2.79943530378235	2.87856283099502	-1.83874001829182	0.00326716189896309	0.0341209734844859
Merged-chr5-105706822-3	chr5	105706741	105706941	+	933.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	6031.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	3.39267166590181	3.80104529473308	3.50416886969402	3.45852200149782	3.2822494043398	3.44731040147048	3.26079330230469	3.44795850935848	-0.652090702052304	0.213601839016745	0.519119274084025
Merged-chr15-26365613-4	chr15	26365500	26365700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	56552.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	6.08818956184242	5.89144105645548	6.16665698153508	6.32812402010812	5.84999580967642	5.75948698632681	6.01773634404622	5.57618344778176	-0.516093426702396	0.0466062395112519	0.221931597727806
Merged-chr2-4554958-4	chr2	4554847	4555047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 11 of 23)	(TTTTTG)n|Simple_repeat|Simple_repeat	-4807.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	6.0326050362659	5.8051196968759	5.65145712677729	6.01266314920457	5.80304711501833	5.8831082378596	6.17475320148188	6.00859493624139	0.120793005021991	0.638107596748056	0.847040716325261
Merged-chr11-102245300-4	chr11	102245183	102245383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3599.0	NM_153544	217216.0	Mm.247335	NM_153544	ENSMUSG00000034773	BC030867	-	cDNA sequence BC030867	protein-coding	6.66458018438071	6.50528746126695	6.56791018503025	6.67834168489629	7.01055831590312	7.18312929664193	6.64724610230298	7.25051691978494	0.60689024332177	0.00537498781444638	0.0501080770640393
Merged-chr5-122643929-4	chr5	122643813	122644013	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011027)	promoter-TSS (NM_011027)	2.0	NM_001038887	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	6.02331880557082	6.02614347285492	5.69790423165433	5.8984289636875	5.46517405007005	5.29187300045262	5.42451305707114	5.38617767270945	-0.876514157812674	0.00105155091754094	0.0140060521631076
Merged-chr12-69458157-4	chr12	69458039	69458239	+	892.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17411.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	4.10581051015755	4.0487218451969	3.86687118709836	3.76419960334458	4.0294351405329	3.9336766072401	3.90228533640709	4.10386878886363	0.149367745064891	0.729948490073151	0.892824063905503
Merged-chr2-79087397-4	chr2	79087266	79087466	+	935.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168060.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	4.65807921072092	4.67762613366514	4.53887779002185	4.52951295736184	4.25207797209456	4.58340081131761	4.71025758076835	4.86587037163621	0.0299119783311935	0.935986132857285	0.97677008152607
Merged-chr10-31445930-4	chr10	31445808	31446008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009413)	promoter-TSS (NM_009413)	50.0	NM_001359365	21987.0	Mm.439966	NM_009413	ENSMUSG00000000296	Tpd52l1	D53	tumor protein D52-like 1	protein-coding	5.61995941943975	5.35560875895835	5.5466317527458	5.79957188733978	5.0330522175054	4.75241020891137	5.2973383511833	5.51692958289462	-0.747536847494074	0.0211563435258588	0.132899777232998
Merged-chr19-12475566-4	chr19	12475462	12475662	+	988.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172442, intron 7 of 8)	intron (NM_172442, intron 7 of 8)	14783.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	5.31614086236811	4.67191793931967	4.96721525144919	5.12849231357496	5.56631543110432	5.58091829337651	5.72386060869645	5.85330868093229	1.12732063022509	0.000235490004844134	0.00415722794017872
Merged-chr1-144246657-4	chr1	144246576	144246776	+	921.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015811, intron 3 of 4)	intron (NM_015811, intron 3 of 4)	2428.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	4.82782773442931	4.12782810967244	5.04273984243006	4.98092547995716	4.26662220489891	4.57317392032824	4.37560935131741	4.48267651754128	-0.813035152165288	0.0507394133767365	0.233532538295682
Merged-chr2-25582588-4	chr2	25582476	25582676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001024616)	TTS (NM_001024616)	-2477.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	6.50554351412231	6.58466752565749	6.12701921191097	6.38780202740091	6.73488722134724	6.45032353481982	6.58269532088464	6.3636408991822	0.198642985693423	0.385541600604887	0.686971877474034
Merged-chr13-64366537-1	chr13	64366437	64366637	+	567.0	f1_c57bl6.idr	exon (NM_009984, exon 6 of 8)	exon (NM_009984, exon 6 of 8)	3983.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	2.83407096782047	2.86688678500501	2.83448108765146	2.39551439373499	2.480044959132	2.45989920730967	2.50318081467979	2.83282245026022	-0.839392482909532	0.252968165410161	0.564222136612973
Merged-chr14-77848583-3	chr14	77848484	77848684	+	739.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025384, intron 3 of 5)	ORR1B2|LTR|ERVL-MaLR	26333.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	3.37873366731968	3.47979714430394	3.44292812549503	3.18787662080555	3.78387316406974	3.79307894151521	4.22915317720101	3.56018044464504	1.5621162412952	0.00192654247727588	0.0227110577989433
Merged-chr19-21564258-4	chr19	21564146	21564346	+	842.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88545.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	3.91164195267771	4.11341094534452	4.4456723415319	3.92334687669404	3.79028398310687	3.74834632448218	3.79098542349274	3.95987985462765	-0.78899338921519	0.085995036423646	0.319577250946843
Merged-chr14-26437775-4	chr14	26437674	26437874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 16 of 22)	intron (NM_001310445, intron 16 of 22)	80227.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	7.13003565318652	7.37550751634073	7.32352000358894	7.36257682873099	6.72981314525013	6.99617748719175	7.12946186989176	6.91292962272822	-0.499368167008905	0.0108081035872271	0.0835208058947447
Merged-chr8-77443298-4	chr8	77443232	77443432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-73724.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	6.67718484537158	6.3335641079159	6.70795572862774	6.44301817240204	6.9873420600208	6.74554486904844	6.67376511956211	6.68847695346371	0.357347387063179	0.100771987552	0.34847075902849
Merged-chr9-72970241-3	chr9	72970157	72970357	+	731.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163725, intron 5 of 6)	intron (NM_001163725, intron 5 of 6)	11472.0	NM_001163725	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	2.59369919643227	2.51892350613893	2.44750241252504	2.52065142126711	2.57245700254137	2.83494102695917	2.99326564331025	2.8445480796806	1.44735869921792	0.0297908799103574	0.166443095850811
Merged-chr3-107034961-4	chr3	107034841	107035041	+	957.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1221.0	NM_008418	16491.0	Mm.30640	NM_008418	ENSMUSG00000047959	Kcna3	Kca1-3|Kv1.3|Mk-3	potassium voltage-gated channel, shaker-related subfamily, member 3	protein-coding	4.96839563221735	5.09520243713397	5.26910344689194	5.03933584278512	4.59354064590027	4.66293267131118	4.8400979987902	4.78429155419928	-0.761453610429329	0.0204492593802056	0.129902528641112
Merged-chr2-66141131-2	chr2	66141046	66141246	+	573.25	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16353.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	3.18771426965332	3.44974555754547	3.04599552674483	3.24568364758931	3.77286219359748	3.76059325808083	3.47517023610005	3.48741751978892	1.31250823174229	0.0137599915314955	0.0987719279165306
Merged-chr3-9001627-7	chr3	9001580	9001780	+	946.1904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	2524.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	3.79863648423817	3.60690167578924	3.68709786703171	3.71241901380011	3.67431459574554	3.97473039478522	4.18959532533627	4.31864949900325	0.984642805355943	0.0346266558547936	0.184220848874232
Merged-chr4-132075426-4	chr4	132075328	132075528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128607)	promoter-TSS (NM_001128607)	-115.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	7.47764107222234	7.38423625745538	7.28516224359006	7.58083542251405	7.74644734751116	7.4405293526197	7.70433621266446	7.55599264732685	0.235745206151883	0.1949673353292	0.495702101692531
Merged-chr15-66684941-4	chr15	66684849	66685049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 10 of 47)	MTD|LTR|ERVL-MaLR	14179.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	5.83165400088767	5.87702214468517	5.73211923392133	6.27408772838447	5.68214294990051	5.95960236692605	6.04282907260004	5.96570519724109	-0.0901786249454225	0.740611225040577	0.897985196074791
Merged-chr10-127586378-3	chr10	127586284	127586484	+	852.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 15 of 88)	intron (NM_008512, intron 15 of 88)	34764.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	4.42924325666334	4.09437886328774	4.19767114154047	4.30790323198141	3.57504744118666	3.86473430419444	3.94838402052677	3.91072028208829	-1.21504026548826	0.00649071091919328	0.0575345345600571
Merged-chr19-32223926-4	chr19	32223829	32224029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 4 of 9)	intron (NM_144792, intron 4 of 9)	-12916.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	8.73623660137553	8.98306402369511	8.81692133021393	8.50740779943757	8.54167892419485	8.52426585509822	8.30751207968567	8.05945145608697	-0.495019515542444	0.00771202877221966	0.0654359553822061
Merged-chr7-141560561-3	chr7	141560433	141560633	+	862.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1647.0	NM_001357068	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	2.96610668934868	2.92126695145712	3.1910399742588	2.90337452183678	2.90919584550256	2.94507755157482	2.76060613341192	3.13669478979198	-0.21929999111263	0.718244103008393	0.887459805371473
Merged-chr13-93499655-4	chr13	93499553	93499753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021310, exon 1 of 11)	5' UTR (NM_021310, exon 1 of 11)	155.0	NM_021310	57748.0	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	6.40495504979607	7.08730456154159	7.18243294666895	6.9209560056776	6.73558263208965	6.67859806946512	7.01373701815216	6.98443277838732	-0.102453137682477	0.665525368834463	0.861482624541591
Merged-chr10-70257323-4	chr10	70257205	70257405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025807, intron 2 of 5)	intron (NM_025807, intron 2 of 5)	12029.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	5.53488879620017	5.74382603236513	5.58773116076306	5.32953510466908	5.36264173166211	5.68271182852267	5.21321981482124	5.20143576572961	-0.299357582895816	0.314145104557087	0.62622271255689
Merged-chr10-99461795-4	chr10	99461704	99461904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147367.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	6.46562450236686	6.06211325320218	6.62115064552409	6.63652082153169	6.20865336627089	6.14853853987345	6.34909888993608	6.30486800472946	-0.325761024302262	0.176942204801928	0.472185620690969
Merged-chr7-142398176-4	chr7	142398059	142398259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10289.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	7.87244968082144	7.63799053988064	8.16367858967384	8.02975685707884	7.70282093186333	8.00602116611717	7.94883419468784	8.15826707605739	0.02319620729003	0.904494431074532	0.964559678221358
Merged-chr5-66364093-4	chr5	66364005	66364205	+	858.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310626, intron 9 of 15)	intron (NM_001310626, intron 9 of 15)	-26440.0	NM_001201416	11787.0	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	4.47369812099298	4.20659774277739	4.2993504020203	4.7139909258038	4.23492101608571	4.27827558131294	4.1843562834942	4.97039233228581	0.0228376998937371	0.95848615532971	0.985199584834632
Merged-chr19-32328307-3	chr19	32328207	32328407	+	991.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	21009.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	4.48024666452448	4.4172434810905	4.44179292977215	4.86867988250794	3.78774188427408	4.03227471050127	4.33956054917242	4.01981088133986	-1.30742649321859	0.00248453675788081	0.0276323190451872
Merged-chr6-140491111-3	chr6	140491025	140491225	+	848.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144920, intron 3 of 30)	intron (NM_144920, intron 3 of 30)	67026.0	NM_144920	109135.0	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	4.18273043948238	3.76859139104866	3.8714559052003	4.22867609276623	3.81108525640631	3.70803838166135	3.85549835580539	3.76417218929342	-0.7085300077147	0.124068805348603	0.390894719188572
Merged-chr12-78861026-4	chr12	78860946	78861146	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023721, intron 1 of 8)	intron (NM_023721, intron 1 of 8)	592.0	NM_023721	73834.0	Mm.311549	NM_023721	ENSMUSG00000021114	Atp6v1d	1110004P10Rik|Atp6m|VATD|Vma8	ATPase, H+ transporting, lysosomal V1 subunit D	protein-coding	4.35325199818384	4.52470897039107	4.26091594760287	4.23283643605976	4.74952122104663	4.33906767609215	4.61252783529132	4.3952682428868	0.467192351046006	0.218173620859392	0.525244543027486
Merged-chr11-103133079-4	chr11	103132974	103133174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027658)	promoter-TSS (NM_027658)	-265.0	NM_001130516	71059.0	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	8.1267645808911	8.36391580709792	7.72848618301765	7.69879002219593	8.12535713458931	8.2236987244414	7.76416167324965	7.91746798204765	0.0175921057302392	0.934729562926669	0.97635719558922
Merged-chr11-55433134-3	chr11	55433022	55433222	+	848.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13042.0	NM_001290817	20692.0	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	3.33129192240185	2.93000969081522	3.27191751329505	3.37368023977603	3.43908983672475	3.55943787966262	3.53130336731136	3.49416086450255	0.897163600235431	0.101075381749061	0.348923061133733
Merged-chr2-48988188-4	chr2	48988086	48988286	+	813.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029924, intron 1 of 16)	LTR87|LTR|ERVL?	-37952.0	NM_001355296	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	4.11497151769255	3.51837335394447	3.99336675971292	3.69150402515975	3.42601366926019	3.52315471758463	3.84075816976715	3.75634056950528	-0.600097787559698	0.240625678865304	0.551185699479073
Merged-chr1-155049190-4	chr1	155049102	155049302	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34062.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	4.99054608684322	5.09237527116524	4.73020231582705	4.89557373462123	4.97707991841299	4.73410818758524	5.1532915162772	5.0212580005638	0.0962872322050273	0.767173512925068	0.908913987857545
Merged-chr6-116669280-4	chr6	116669162	116669362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	MLTR14|LTR|ERV1	4574.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	7.23527415446304	7.57432039120511	7.12240347202584	6.97541969019568	7.31568416504288	7.42429702125393	7.17839510537228	7.23146622184901	0.068155120836274	0.744088132825692	0.89923574268619
Merged-chr17-24212464-4	chr17	24212372	24212572	+	962.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3085.0	NM_010947	18209.0	Mm.259542	NM_010947	ENSMUSG00000036473	Ntn3	Ntn2l	netrin 3	protein-coding	4.72140785447554	4.9361860015376	4.31201561813863	4.84687710728092	4.94698956659161	5.00636674858418	4.91352816587938	4.59619138911876	0.287077582442571	0.429257986431115	0.720143399871997
Merged-chr1-191849649-4	chr1	191849555	191849755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28182.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	6.56048871987621	6.57141643587121	6.89729796124749	7.40065447823238	7.3384311155367	6.86342125884468	7.76149765174946	7.80107852697641	0.777475464156461	0.00697526814040821	0.0607060272072637
Merged-chr15-78298829-4	chr15	78298728	78298928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287389, intron 1 of 11)	intron (NM_001287389, intron 1 of 11)	6893.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	5.99038251679449	6.41990264066499	5.8613317336119	4.83243646524783	5.98510925027836	5.96752470788981	5.85353192328237	5.14390941287376	-0.207365633206782	0.72064325724833	0.888354390739079
Merged-chr3-22008652-4	chr3	22008569	22008769	+	907.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67983.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.01310922698382	4.20289596976576	4.34753125563054	4.19053144843067	4.51430020030374	4.1377811477419	4.36866244845323	4.46471502661063	0.466087384042337	0.234885151520947	0.544748955723485
Merged-chr6-134068621-4	chr6	134068516	134068716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	32916.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	5.69935905939095	5.74500682248645	5.56765156769432	5.83208778625477	5.83874668712565	5.56607879862798	5.79084397073504	5.6963304664279	0.0139966298811101	0.95683477527726	0.984757116793997
Merged-chr16-92801055-4	chr16	92800956	92801156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	25018.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	5.96647519798555	5.51509074467429	5.90286905688256	6.01561807458991	5.90294436175762	5.36211049254083	5.87273066218885	5.92056426208093	-0.12732073424518	0.652147896497922	0.854409893884033
Merged-chr17-6960917-4	chr17	6960817	6961017	+	943.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147155, intron 1 of 3)	CpG	239.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	4.35253811987485	4.39634828306861	4.30779131533701	4.20211686566714	4.59781004438375	4.61077661483693	4.28919633863714	4.69856512779232	0.584535209870958	0.115468416586472	0.376025664618916
Merged-chr13-30749931-4	chr13	30749841	30750041	+	955.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347508, intron 1 of 8)	intron (NM_001347508, intron 1 of 8)	708.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	4.63535983834365	4.9366830069183	4.33700102725086	4.43802110251101	4.66754731563361	4.60471517187549	4.45361001072744	4.42699542289177	-0.125658055039209	0.741805571327799	0.898388354542756
Merged-chr1-44147883-4	chr1	44147769	44147969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011729, exon 1 of 15)	5' UTR (NM_011729, exon 1 of 15)	125.0	NM_011729	22592.0	Mm.2213	NM_011729	ENSMUSG00000026048	Ercc5	Xpg	excision repair cross-complementing rodent repair deficiency, complementation group 5	protein-coding	7.81787806565662	7.48143910971794	7.61000401799827	7.99082323360342	7.6189661328848	7.50405859740442	7.64889877987509	7.77630458653323	-0.14210079965637	0.458313425943801	0.741196722451408
Merged-chr5-99284529-4	chr5	99284435	99284635	+	816.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31608.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.60621156128346	3.9084079198277	3.60668373327734	3.62551403019878	3.43812120685191	3.83844547070966	3.89881594280548	4.08480875811654	0.404681727696614	0.411905780353566	0.707250587970943
Merged-chr10-67069163-4	chr10	67069056	67069256	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 1 of 7)	intron (NM_178606, intron 1 of 7)	27832.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	4.71313776421588	4.76648866626833	4.63338560280552	4.97238644924916	4.5745749044245	4.80814480486904	4.72999579649914	4.95784903579052	-0.0551653318783125	0.873814563940803	0.952718075588848
Merged-chr13-21831551-3	chr13	21831504	21831704	+	885.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175657).2	TTS (NM_175657).2	554.0	NM_175657	319161.0	Mm.261664	NM_175657	ENSMUSG00000069305	Hist1h4n	-	histone cluster 1, H4n	protein-coding	3.3473637898689	3.38946857506895	3.63672198349045	2.52850802439715	3.73199386849698	3.70693823120825	3.45654621081127	4.0328578812864	1.27300882510218	0.234507165385414	0.544421428220754
Merged-chr8-84707438-4	chr8	84707338	84707538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081981, exon 11 of 11)	3' UTR (NM_001081981, exon 11 of 11)	5981.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	5.65307466645204	5.62136134920609	5.5774755833654	5.50777742666196	5.50894319259608	5.72435485668124	5.44031882650987	5.37493204893385	-0.117539197625393	0.662377581159156	0.860025750147184
Merged-chr4-140964846-4	chr4	140964750	140964950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355515, intron 1 of 7)	B4A|SINE|B4	3579.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	6.23323113281254	6.26816958523487	5.93662066104748	6.13850265571494	6.35319207595426	6.11401999164457	6.25772535216429	6.22987581894058	0.147084712781351	0.522365657964933	0.781971587334536
Merged-chr5-103389605-4	chr5	103389496	103389696	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35596.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	5.38816152210951	5.036051925715	5.38910469208545	5.29709209415387	4.90084398542893	5.02100338889493	4.93431292951684	4.75739184896699	-0.725485556479576	0.0208243669078551	0.131561570660613
Merged-chr11-60537311-1	chr11	60537211	60537411	+	1000.0	f0_c57.idr	promoter-TSS (NM_172943)	promoter-TSS (NM_172943)	-372.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	5.66383478264174	6.17781931784323	5.55449610368788	5.26407116012882	5.74453471221998	6.18293601030506	5.60956437571356	5.85619253073684	0.26050161734679	0.413577884523105	0.708480186817888
Merged-chr19-9916136-4	chr19	9916076	9916276	+	873.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16643.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	4.15419865745234	3.8997636478809	3.63775704706011	3.66185997286474	4.2268814887573	4.09556278922838	4.25615536500027	3.86728614660483	0.753306441027994	0.0954278976077746	0.338068003375662
Merged-chr7-26244023-4	chr7	26243941	26244141	+	970.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22790.0	NM_001167540	100312477.0	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	5.94257206997756	5.25323862698687	5.66460183767583	5.90988260728912	5.56207770783303	5.38441089912596	4.91589402099097	5.05642005448345	-0.796634843820407	0.0175270903892611	0.117042946506916
Merged-chr11-115189518-4	chr11	115189414	115189614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 2 of 9)	intron (NM_001033393, intron 2 of 9)	2027.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	8.60824839817512	8.73435341886756	8.64967637729358	8.59832909932538	8.42796084908293	8.56508279496433	8.41657715641843	8.35458019260859	-0.258953922743719	0.0784916510534481	0.303220863572603
Merged-chr4-106840116-4	chr4	106839946	106840146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-35039.0	NM_001347159	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	6.0421693616718	5.86115918843401	5.36417905923853	5.3381237380255	6.10173904447647	5.83556441717728	5.80208558536448	5.60164175025645	0.293324608705802	0.33667496094806	0.646614690518928
Merged-chr2-28540128-4	chr2	28540020	28540220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 1 of 17)	intron (NM_001145836, intron 1 of 17)	6656.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	8.47502959043845	8.74514449502565	8.6434274183061	8.38514616897709	8.47150574314317	8.40788650191398	8.18547073778742	8.30099940432396	-0.275013798700165	0.0994087010469576	0.345751865713237
Merged-chr11-76605401-3	chr11	76605313	76605513	+	718.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-27674.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	3.01546450534275	3.15555081169681	3.01583168748877	3.17968625668861	2.92152567685912	3.18462749093373	2.94402454912849	2.81889177172019	-0.537727458837633	0.366813710021313	0.671196990130232
Merged-chr3-53460265-4	chr3	53460167	53460367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172501, intron 3 of 6)	intron (NM_172501, intron 3 of 6)	2991.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	6.86315261283789	6.97725064650141	6.7800191734758	6.86484107834959	7.00960103922805	6.92752325059456	7.02930324116392	6.66917325843014	0.0649178023095522	0.744632673434448	0.899296643574982
Merged-chr10-67215320-4	chr10	67215217	67215417	+	882.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_207221, exon 4 of 26)	exon (NM_207221, exon 4 of 26)	29567.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	3.99373608720832	3.65676231292597	3.99433155517902	4.05015977992762	4.13988008297109	3.7965012752391	4.02244389328205	3.84371884629491	0.0776693851631228	0.863049464561313	0.948462965894327
Merged-chr3-36771739-4	chr3	36771654	36771854	+	920.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-81587.0	NM_019510	22065.0	Mm.74363	NM_019510	ENSMUSG00000027716	Trpc3	Mwk|Trcp3|Trp3|Trrp3	transient receptor potential cation channel, subfamily C, member 3	protein-coding	4.78015891582251	4.19277084901122	4.33027902900615	4.55026145966254	4.14522650559207	4.15294890700077	4.59025446085557	4.41465426177519	-0.344636935613288	0.401104819981828	0.698839078520995
Merged-chr17-10500981-4	chr17	10500947	10501147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	44831.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	6.52223693032573	6.21376008684604	6.27691482317416	6.36554804471857	6.00084246155528	5.71522915465388	6.09109192406932	6.05490722720432	-0.571187086911045	0.0166266924593614	0.112840517025637
Merged-chr2-181275493-4	chr2	181275377	181275577	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 2 of 9)	intron (NM_198169, intron 2 of 9)	12489.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	4.47782689811066	4.5238729394346	4.80395507623624	4.75345283196517	4.91975298391902	4.35462324832232	5.09395674324623	4.90402326240962	0.410778660549479	0.268272628739983	0.580076430005696
Merged-chr10-63243048-3	chr10	63242832	63243032	+	887.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026101)	promoter-TSS (NM_026101)	-865.0	NM_030114	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	3.0871194861859	3.03936804420651	3.20340547981417	2.88235472158218	3.41220990543326	3.19709615537793	3.1909045440763	2.95956268730059	0.636099418126476	0.272891290409767	0.584364672732811
Merged-chr3-9902554-4	chr3	9902447	9902647	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68868.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	5.33103926463938	4.85549573362613	5.21331141689558	5.27571462179724	5.38905396746501	5.11408058991791	5.21811974091295	5.17826865612296	0.0965422441160366	0.754286320983005	0.903237597638824
Merged-chr3-98033465-3	chr3	98033379	98033579	+	906.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	19941.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	4.2295676861711	4.1315647753984	4.18594846045742	4.44254472768624	3.87923932103603	3.94608284705371	4.3341254025359	4.13757749387633	-0.466857085754669	0.271607155636357	0.583248237956304
Merged-chr1-91235593-4	chr1	91235502	91235702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-14702.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	6.09021158788269	5.60078670902161	6.030925984997	5.99227591928803	5.99063002743874	5.64978996473838	5.89317095105065	6.06714526956185	-0.0420853782161018	0.87261339802407	0.952210658724727
Merged-chr10-44735944-4	chr10	44735827	44736027	+	772.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-277179.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.14310962852749	4.0066226443338	4.22579136358641	3.76896331581757	4.06961183988778	3.98159703265194	3.67742560815902	3.803854996618	-0.376586838889711	0.414615220740885	0.70912924922228
Merged-chr14-25393111-3	chr14	25393011	25393211	+	974.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-66074.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	4.44735852205812	4.07353188415175	4.41137306108823	4.37776198679142	3.91637091592886	4.03858078994495	3.78694454265036	3.96707512824539	-1.07253552918912	0.0118681405576587	0.0892040524555004
Merged-chr15-78580603-3	chr15	78580514	78580714	+	970.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155437, intron 1 of 1)	intron (NR_155437, intron 1 of 1)	975.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	4.36569542269617	3.8906956489118	4.76811094357884	4.82021070762686	3.77282703790012	3.83942711027788	3.87960261890891	3.50590805777784	-2.0288802102431	7.55262902430852e-05	0.00159758865177194
Merged-chr9-24503009-1	chr9	24502909	24503109	+	1000.0	f0_balb.idr	exon (NM_172920, exon 1 of 22)	exon (NM_172920, exon 1 of 22)	131.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	5.91090822993404	5.84255385254418	6.32354013065977	5.98003193013874	5.58415418256445	5.92246836510054	5.40621903551536	5.66422172559275	-0.60415594617248	0.0271511180993643	0.156861949252109
Merged-chr1-55507279-4	chr1	55507201	55507401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	101355.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	7.08546000975656	7.41443836399391	7.05053214179532	7.38298386287718	6.96594200414069	7.04404863842819	7.08601741664785	6.66282462698275	-0.416627694912421	0.0453454694709632	0.21802082933959
Merged-chr2-165332818-4	chr2	165332710	165332910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6331.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	6.048369751739	6.32066681108458	6.47369513278235	6.41571770434118	5.94726177474463	5.96136531925518	6.10291072502331	6.22842797727854	-0.413317478395271	0.0834047258966101	0.313908505787156
Merged-chr1-87213901-4	chr1	87213800	87214000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347083)	promoter-TSS (NM_001347083)	-11.0	NM_001347083	26987.0	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	7.04002046414684	7.32548297838235	6.87904127136472	7.13248495315934	7.387947916298	7.53060342261404	7.46571488033811	7.08599715611165	0.363248840266849	0.0728300268135981	0.290336368062839
Merged-chr12-41407822-3	chr12	41407725	41407925	+	864.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	ORR1C1-int|LTR|ERVL-MaLR	78232.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	4.11184759428845	4.00311772716067	3.94291544620782	3.94702113771371	3.82352415308096	3.42721788225268	3.56459775539437	3.51417851957214	-1.18975043129324	0.0156809738159783	0.108165135696048
Merged-chr5-50059027-4	chr5	50058892	50059092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133911)	promoter-TSS (NM_133911)	4.0	NM_133911	70693.0	Mm.272974	NM_133911	ENSMUSG00000029090	Adgra3	3830613O22Rik|AU044632|Gpr125|Tem5-like	adhesion G protein-coupled receptor A3	protein-coding	6.65481373083765	6.30988493199002	6.64214925062988	7.24633650196179	5.50264520950679	5.58525171439253	5.82555978129644	5.74387794066346	-1.70070872785315	3.25594156032176e-09	1.90381872300842e-07
Merged-chr15-100681972-4	chr15	100681861	100682061	+	879.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 5 of 7)	B1_Mur2|SINE|Alu	5959.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	4.33352193220743	4.15531101996832	4.49687665434018	4.41268232957409	4.13702720732539	4.27357062214051	4.3978310738461	4.41531146357632	-0.127356801116604	0.74319514372663	0.898817214090863
Merged-chr15-80813050-4	chr15	80812955	80813155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177124, intron 1 of 21)	intron (NM_177124, intron 1 of 21)	14445.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	5.97971370839162	5.99085135959053	5.53780246798372	5.47734773707864	5.49906531110848	6.04710781324932	5.53887555000225	6.2205032334414	0.157376906526925	0.61542157315308	0.834461661846382
Merged-chr6-29825464-4	chr6	29825351	29825551	+	878.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	ORR1F|LTR|ERVL-MaLR	-28290.0	NM_001347084	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	4.94580731076991	4.85770286585054	4.62631401709537	4.84263828033839	4.26563622505915	4.58485580606995	4.64437453412908	4.70173551228887	-0.596948119767729	0.0967361471151682	0.340703642776615
Merged-chr2-6213167-5	chr2	6213074	6213274	+	996.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024208)	promoter-TSS (NM_024208)	-180.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	4.79518937202154	4.88235869492135	4.86744529681295	4.87756509036551	4.60149125612525	4.89356858617555	4.73630127146757	4.59467633034082	-0.320559909759373	0.336153887249543	0.646244323954596
Merged-chr1-91398812-4	chr1	91398695	91398895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355152)	promoter-TSS (NM_001355152)	28.0	NM_023343	67444.0	Mm.337240	NM_023343	ENSMUSG00000026309	Ilkap	0710007A14Rik|1600009O09Rik|PP2C-DELTA	integrin-linked kinase-associated serine/threonine phosphatase 2C	protein-coding	7.27806866312235	7.24130702801836	6.89692365268481	7.06769407584143	7.16366263443833	7.39250610422011	7.0669153186528	7.03692515258484	0.0582303443222287	0.769871084113591	0.909883669779186
Merged-chr8-70674217-4	chr8	70674130	70674330	+	780.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015816, intron 1 of 4)	ID_B1|SINE|B4	999.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	3.44979019632451	3.56069299536859	3.50615220739629	3.71483249943839	3.67437350326332	3.37771204527859	3.31962588987727	3.60908335209487	-0.195408378974506	0.70270917240637	0.880373386414042
Merged-chr2-163602882-4	chr2	163602770	163602970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131225, intron 1 of 3)	intron (NR_131225, intron 1 of 3)	556.0	NR_131225	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	7.32700883121777	7.39016193787778	7.33840611374662	7.29423803198296	7.19900997635621	7.30727352634912	7.26097218585427	7.1604795755259	-0.141663327503737	0.417622707686148	0.711385792140725
Merged-chr15-36793687-4	chr15	36793573	36793773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011740, exon 2 of 7)	5' UTR (NM_011740, exon 2 of 7)	865.0	NM_011740	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	8.31306114781858	8.56615259761996	8.17563432675549	8.28337735061657	8.55558354107002	8.8261496323891	8.80570905588555	8.59808029683868	0.448501006619149	0.00717721404174727	0.0620737446266742
Merged-chr2-83742379-4	chr2	83742265	83742465	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 2 of 29)	Charlie24|DNA|hAT-Charlie	17968.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	5.00337768466104	5.76635654723249	5.41915588499748	5.95963358145506	5.38271453701764	5.75916849368718	5.55708224260948	5.22449400710844	-0.192478212196878	0.57093709179256	0.810291876393379
Merged-chr11-74577224-3	chr11	74577122	74577322	+	889.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 1 of 24)	intron (NM_001015046, intron 1 of 24)	12936.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	4.37074539633746	4.24612066102768	4.74209043779811	4.22399173588771	3.8444751845181	4.33293293181571	3.57806288457589	3.58829867973674	-1.40996692250995	0.00520195269358074	0.0489321779802278
Merged-chr8-46639227-4	chr8	46639153	46639353	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009810, exon 7 of 7)	3' UTR (NM_009810, exon 7 of 7)	21962.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	5.01232402474333	4.56452826665615	5.13088796665865	4.95319305992069	4.49211322427285	4.30280773150271	4.36950941104467	5.12725090740297	-0.650247560054689	0.109575895877087	0.365520742294421
Merged-chr1-171017025-6	chr1	171016967	171017167	+	918.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1859.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	3.65918019381593	3.61500410179559	3.60607046015369	3.81959381499403	3.61045759378572	3.66556357909425	3.6451251459719	3.70901503867553	-0.102240859548329	0.827266998998619	0.933777953087895
Merged-chr11-114675446-4	chr11	114675337	114675537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053273)	promoter-TSS (NM_053273)	-31.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	6.80718826610935	6.87811099266632	6.52553482961613	6.65716452007034	7.038951077849	6.85201592503961	6.99184842821461	6.98643264522963	0.352643212820028	0.0774998716531257	0.301095102035797
Merged-chr11-61505084-4	chr11	61504991	61505191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013717)	promoter-TSS (NM_013717)	-53.0	NM_013717	27078.0	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding	6.55127565418468	6.43016487911096	5.90823879209648	6.01405403458682	6.52787561551569	6.64882517613571	5.87818409907998	6.60737612962801	0.302432928090669	0.284637139105096	0.5964138879162
Merged-chr10-81358345-3	chr10	81358244	81358444	+	868.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028657, intron 1 of 9)	intron (NM_028657, intron 1 of 9)	853.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	3.58283912898232	3.75622586977317	3.83532530014654	3.28988761952188	3.6723341112028	3.58324264973576	3.67476173435979	3.68799223798525	0.113233715096397	0.821713522057096	0.931839131812928
Merged-chr14-14640728-4	chr14	14640621	14640821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62304.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	5.3314371520354	4.70058185795131	4.73277357546145	5.20194912381037	5.02342738231109	4.82719995703749	4.7501082580194	4.4625188225743	-0.475103693493187	0.205800313469066	0.509536349522233
Merged-chr7-72240208-3	chr7	72240109	72240309	+	706.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024703, intron 4 of 22)	intron (NM_001024703, intron 4 of 22)	66386.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	3.30947669580061	3.38785156771742	3.08384820173809	3.69647232246787	2.78432293900401	2.99348418111501	2.87628518256433	2.80991971960497	-2.39328506102304	0.000408936311325808	0.00655471089572895
Merged-chr17-27908772-6	chr17	27908658	27908858	+	897.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286040)	promoter-TSS (NM_001286040)	484.0	NM_026836	68776.0	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	4.00303412786443	4.13845278590939	3.85515776034405	3.9822386196348	3.92149233729078	3.97564959993156	3.73177047064698	4.0012167438493	-0.243757533838211	0.573534015166154	0.811888602285473
Merged-chr7-44136416-4	chr7	44136321	44136521	+	941.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008454)	promoter-TSS (NM_008454)	-869.0	NM_008454	16615.0	Mm.440887	NM_008454	ENSMUSG00000038968	Klk1b16	Klk16|mGk-16	kallikrein 1-related peptidase b16	protein-coding	4.73734429739581	4.69971904374153	5.04890783924222	4.96366683023206	4.52821490957083	4.56279878128077	5.02388600786783	4.95019658798204	-0.194699406982644	0.585111947801322	0.818007803493864
Merged-chr2-31460356-6	chr2	31460232	31460432	+	733.222229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9938.0	NM_007494	11898.0	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	3.25450048694747	3.09000568428769	3.13207382610324	3.12480816491473	3.31125137481903	3.24380850228308	3.29925571629496	3.6519475158768	0.86483329662519	0.107307086560052	0.361382260156614
Merged-chr4-84862128-4	chr4	84862024	84862224	+	996.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-22185.0	NM_175275	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	5.14091277617916	4.99700050807537	5.03945228554976	5.08959876218053	5.38260475536894	5.14343415516929	5.55155922046378	5.10509859465877	0.45432365113988	0.13238079178409	0.405161629369399
Merged-chr6-40236084-6	chr6	40236025	40236225	+	832.402771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004182, intron 2 of 2)	intron (NM_001004182, intron 2 of 2)	-89353.0	NM_023538	69923.0	Mm.32840	NM_023538	ENSMUSG00000029916	Agk	2610037M15Rik|6720408I04Rik|AI465370|Mulk	acylglycerol kinase	protein-coding	3.62165685370378	4.03392670462288	4.09105973318131	4.19585579095215	3.86642004905824	3.91797960333997	3.66990644993981	4.1727709128991	-0.259160583276524	0.583464245985546	0.817141538741641
Merged-chr5-32854335-4	chr5	32854230	32854430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194340)	promoter-TSS (NM_194340)	-100.0	NM_194340	215476.0	Mm.248721	NM_194340	ENSMUSG00000054280	Prr14l	6030436E02Rik|C330019G07Rik|Prl14l	proline rich 14-like	protein-coding	7.1120526094607	7.61173972847881	7.3373050000889	7.17053199985317	7.48448140969239	7.47267605446254	7.31096540229493	7.35254202490607	0.119513164912461	0.542742543454294	0.793917205662524
Merged-chr10-12957489-4	chr10	12957357	12957557	+	893.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029075, intron 1 of 2)	intron (NM_029075, intron 1 of 2)	6802.0	NM_029075	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	4.5382147382008	4.81463597839804	4.7811889961442	4.94671358521139	4.88364304831032	4.42578388784073	5.02053228161446	4.62188108773396	-0.0504791884888281	0.88982680933874	0.958707068219514
Merged-chr2-126602422-4	chr2	126602328	126602528	+	868.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008230, intron 7 of 11)	intron (NM_008230, intron 7 of 11)	16250.0	NM_008230	15186.0	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	4.98423681526075	4.63797244244089	4.34462136573523	4.0580364734008	4.4573093259096	4.74314743210977	4.5055235357711	4.92109328620405	0.271775867988957	0.521187361031221	0.781250328647867
Merged-chr8-34689912-3	chr8	34689810	34690010	+	995.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER88|LTR|ERVL	-49594.0	NR_040706	330734.0	Mm.149998	NR_040706	ENSMUSG00000109819	B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA	3.61690183647686	3.67687885186223	3.75582117090917	3.4013641378964	4.93089947135226	4.78827113126314	4.51986876298832	4.83600772510332	3.02944301398372	3.03423058670952e-13	3.59356903380028e-11
Merged-chr13-92354880-8	chr13	92354762	92354962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010049)	promoter-TSS (NM_010049)	79.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	7.79567251253358	7.8557620922297	8.53534573800048	7.93397027185888	7.49389038245269	8.05039110552005	7.57490038268297	7.74396304305386	-0.433581587128599	0.0569954546660174	0.250192998314675
Merged-chr9-7766808-3	chr9	7766720	7766920	+	812.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152989, intron 1 of 5)	intron (NR_152989, intron 1 of 5)	2655.0	NR_152989	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	3.75091765671302	3.92079376718292	3.80089415038878	3.66668492021601	3.77987110621393	3.70660136353293	3.63239201428129	3.53099836348486	-0.342236730756306	0.465350697016639	0.745811792142008
Merged-chr2-70946932-4	chr2	70946843	70947043	+	916.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	71431.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	4.93712883032253	4.40627635685615	3.9390601963895	4.2602845075392	4.29864457658475	4.53891470205307	4.69490962321341	4.53013450007098	0.201598352149721	0.643685644154398	0.849871909760734
Merged-chr12-105685345-4	chr12	105685245	105685445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178613)	promoter-TSS (NM_178613)	-7.0	NM_178613	66787.0	Mm.248019	NM_178613	ENSMUSG00000044715	Gskip	4933433P14Rik	GSK3B interacting protein	protein-coding	7.21756302338584	7.47892311317069	7.0070057046179	7.30590970739096	7.62332532486762	7.90653655207848	7.46763465095976	7.5266175186343	0.494329160698928	0.0129279320765385	0.0946802425430535
Merged-chr14-25850600-3	chr14	25850483	25850683	+	817.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	8428.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	3.50815321428718	3.60119114335587	4.02441271000621	4.0543163574605	3.52861141791013	3.68782181800574	3.8732377731345	3.97872789684048	-0.157060144364958	0.756371783604906	0.904259249306554
Merged-chr16-17276812-3	chr16	17276742	17276942	+	954.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177473, exon 3 of 10)	exon (NM_177473, exon 3 of 10)	542.0	NM_177473	224019.0	Mm.246388	NM_177473	ENSMUSG00000055692	Tmem191c	4933405M22Rik|D16Bwg1494e|MNCb-4137	transmembrane protein 191C	protein-coding	4.01589521121245	3.97590727477006	3.96876957547656	4.07734508095427	3.67674890677189	3.98870132880382	3.99912996990078	4.05999295645601	-0.232314968119336	0.59340409483338	0.822739598538124
Merged-chr8-125568503-4	chr8	125568407	125568607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	1356.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	7.05624347892109	6.95489100329881	7.09392895073045	7.22174379481343	6.97734666098277	7.02087546197013	7.39138018507971	7.51997757789634	0.208909476903021	0.325201876783276	0.636778751273879
Merged-chr3-98083143-4	chr3	98083027	98083227	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 5 of 33)	RSINE1|SINE|B4	69589.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	4.76130252082254	5.14569043873005	4.7201237816818	5.17017739062977	5.03723925635666	5.19544862790134	5.03144685002739	5.0194186767024	0.162469164613604	0.62263112003159	0.83856689674037
Merged-chr2-122234827-4	chr2	122234744	122234944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146126)	promoter-TSS (NM_146126)	5.0	NM_146126	20322.0	Mm.371580	NM_146126	ENSMUSG00000027227	Sord	Sdh-1|Sdh1|Sodh-1	sorbitol dehydrogenase	protein-coding	5.85393671395655	5.55764748763025	5.48376877198151	5.40302913863284	5.61122820994655	5.44348298852558	5.71373856918556	5.64158607254786	0.061229619952223	0.824579270279896	0.932696938095671
Merged-chr17-56256056-4	chr17	56255911	56256111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010192)	promoter-TSS (NM_010192)	-782.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	8.02920474361905	8.187517679791	7.74291616670883	8.11760545501938	8.03471940547071	8.04654947519984	7.89658176998616	7.81010914321077	-0.107533252532096	0.542179015688129	0.793691778334718
Merged-chr1-182908573-4	chr1	182908481	182908681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46207.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	7.91552077908698	7.46425032688342	7.76257906493245	7.92284727832989	7.60294636315465	7.60112326157026	7.68522285791392	7.88356459264145	-0.112730911288678	0.54956112010184	0.798066121957133
Merged-chr2-26352127-4	chr2	26352020	26352220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001139504)	promoter-TSS (NM_001139504)	-10.0	NM_001139504	52838.0	Mm.31239	NM_026828	ENSMUSG00000075467	Dnlz	1110034G11Rik|D2Bwg1335e|HEP1	DNL-type zinc finger	protein-coding	6.58901898441367	6.53276812391011	6.31274025966062	6.42284195502338	6.75866070016118	6.76576327486066	6.35536236490233	6.47160170111577	0.201969502122007	0.364735632360348	0.669509213315223
Merged-chr5-43788212-2	chr5	43788112	43788312	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6063.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	3.25138982606672	3.38824435767376	3.25179679552469	3.0974501641386	3.17041828068489	3.79328036590597	3.46457070399065	3.31073662468846	0.716104653090022	0.192794649671113	0.492673596931864
Merged-chr13-51830834-2	chr13	51830734	51830934	+	845.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15841.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	3.50314655036095	3.03172677081474	3.30587062911783	3.24898784033086	3.19475461566799	2.89421557843685	2.92830072561877	3.35635742722076	-0.650246024126823	0.287265762025342	0.598979176834825
Merged-chr3-95014854-4	chr3	95014762	95014962	+	932.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357863, intron 1 of 8)	CpG	376.0	NM_030074	78266.0	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding	4.42088972024917	4.58019700506657	5.19201682771046	3.99880285283802	4.38025853393936	4.4127851948928	4.31076505913374	4.50416232439241	-0.472037562993484	0.298468811985881	0.610585490841611
Merged-chr1-34838488-4	chr1	34838380	34838580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 1 of 6)	ORR1B1|LTR|ERVL-MaLR	4570.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	6.28756076271505	6.16465089933753	6.51828201457122	6.8008342762409	6.3625624755313	6.27908957448648	6.54772697331936	6.66512342785472	-0.0189519190384105	0.939993771699436	0.978363933407335
Merged-chr7-5038419-4	chr7	5038305	5038505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039532)	promoter-TSS (NM_001039532)	41.0	NM_001039532	654801.0	Mm.333548	NM_001039532	ENSMUSG00000043290	Zfp784	C730049F21Rik|Znf784	zinc finger protein 784	protein-coding	6.57173838570208	6.97637633946075	7.16209870415522	6.67575241177301	6.30186520256093	6.71692608700475	6.4376041168209	6.51818199489317	-0.527397354240193	0.0256699713212342	0.151117598930951
Merged-chr5-65931467-3	chr5	65931374	65931574	+	935.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35650.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	4.00492728042183	3.89135271352597	4.00551608043648	4.31102162784863	3.70777471034998	4.02629185671478	4.36126915060041	3.90184661546578	-0.153893315017388	0.740405914726833	0.897887005267449
Merged-chr3-146630622-1	chr3	146630522	146630722	+	871.5	f0_balb.idr	3' UTR (NM_009474, exon 8 of 8)	3' UTR (NM_009474, exon 8 of 8)	-11310.0	NR_045949	100286843.0	Mm.475299	NR_045949	ENSMUSG00000085810	Gm16325	-	predicted gene 16325	ncRNA	3.99586281118805	3.62365192907079	3.82433368980827	4.04297672382709	3.11426976829985	3.50602321442273	3.37784696274008	3.45061578910035	-1.78145833580157	0.000981663200580487	0.0132372328988634
Merged-chr9-41051708-4	chr9	41051596	41051796	+	862.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	27810.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	3.89999696580246	3.75785588010141	3.95447991127461	4.15141275384395	4.10957995429433	4.36548592988449	4.13206474438516	4.46700805299057	0.786133629065598	0.069779880415762	0.282738208465505
Merged-chr2-32967493-4	chr2	32967400	32967600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4199.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	5.45313456834104	5.55715972830443	5.48319086140935	5.30700574539545	5.66984283645242	5.68690775866259	5.71334194982392	5.8288139109162	0.480995116271251	0.0670374335111764	0.276152617096475
Merged-chr7-35580068-3	chr7	35579965	35580165	+	830.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145840, exon 1 of 1)	3' UTR (NM_145840, exon 1 of 1)	5517.0	NM_145840	243923.0	Mm.222680	NM_145840	ENSMUSG00000056043	Rgs9bp	R9AP|Rgs9-1bp	regulator of G-protein signalling 9 binding protein	protein-coding	3.82468731802148	3.75366280062987	3.67663977473743	3.79096207093466	3.73318423074915	3.6828360031126	3.55387532018361	3.50689764891686	-0.423086387338427	0.367230802192143	0.671646057588636
Merged-chr1-16671279-4	chr1	16671193	16671393	+	993.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027415, intron 2 of 2)	B2_Mm2|SINE|B2	6102.0	NM_026392	70397.0	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	4.83335474941353	4.88838132448879	4.4635363738791	5.01034543162271	5.82157592699071	5.36017890784174	5.19082933168713	5.05345651622817	1.072022680063	0.00295678174513578	0.031619706706283
Merged-chr13-19952448-3	chr13	19952359	19952559	+	629.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-128202.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	2.6056077563646	2.61925491054642	2.72323747408756	2.6864846330083	2.25717089151721	2.27326792572179	2.53432887041467	2.47572876071843	-1.61423230484067	0.0344365276663694	0.183508936792524
Merged-chr7-143058343-3	chr7	143058184	143058384	+	837.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-4598.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	3.03098270970599	3.16003485520285	3.38842481315399	3.10215731522985	2.97695645206227	3.21020718155594	3.26683422659698	3.6223151351243	0.418328530564205	0.472611797267511	0.750726068237093
Merged-chr4-102801697-4	chr4	102801586	102801786	+	961.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144906, intron 1 of 23)	L1MB8|LINE|L1	41551.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	5.03689601722045	4.493746019088	4.57307946198608	4.72134828202203	4.79173495425115	4.66186494338309	5.01267448380437	4.61254102790298	0.126918164138583	0.723803013258821	0.889756570138846
Merged-chr5-123395591-5	chr5	123395529	123395729	+	724.766663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133917, intron 1 of 16)	intron (NM_133917, intron 1 of 16)	831.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	3.77992254275855	3.54179324749285	3.56733091858281	3.49354746892551	3.76104627176439	3.62468890518949	3.85780122395503	3.9173474041603	0.622259830894896	0.180772417560565	0.477181528260466
Merged-chr11-8589699-4	chr11	8589594	8589794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	74841.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	7.95484458021847	8.32827074027434	7.95616634168507	7.97709043782586	7.81737437949006	7.89240037173095	7.60010880042832	7.39959735065864	-0.481064562073361	0.0128480969751677	0.094309033164428
Merged-chr5-62677559-4	chr5	62677441	62677641	+	933.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 12 of 32)	intron (NM_178407, intron 12 of 32)	88636.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	5.10670127853526	5.12295926203368	5.68318283139934	5.74964458061257	4.74663987350383	4.77022744021609	4.82865122945506	4.88811966522224	-1.25189532485115	0.000275919950317681	0.00473941494610982
Merged-chr2-124627910-4	chr2	124627812	124628012	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	B4A|SINE|B4	17616.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	5.630868288086	5.45916603522193	5.65701035830096	5.85614755217951	5.83925705947884	5.78031905681671	5.29000569205103	4.93915197936964	-0.241870470866874	0.463354609910491	0.744662853439124
Merged-chr15-95887578-4	chr15	95887466	95887666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 2 of 19)	intron (NM_175344, intron 2 of 19)	-57494.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	5.64258288199039	5.88647829400301	5.81252726140986	5.70208227906974	5.23029114614021	5.65479133097074	5.71366903076598	5.50350135919	-0.398976935589475	0.148871835507016	0.430746673512948
Merged-chr11-86357418-4	chr11	86357307	86357507	+	954.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080931, intron 1 of 29)	CpG	118.0	NM_001080931	327987.0	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	4.72224365375656	4.37397684298946	4.72302911571976	4.26470593986017	4.54454125826345	4.82060454439881	4.46512606214557	4.75541494194627	0.288204956784854	0.445605251701374	0.73158879225369
Merged-chr9-114640147-4	chr9	114640021	114640221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153585)	promoter-TSS (NM_153585)	79.0	NM_153585	78893.0	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	8.4837739638832	8.81017998783998	8.50044746954582	8.5123827136739	8.82773562802869	8.87528563008459	9.0388293216556	8.81156085662837	0.38332318668622	0.0154967038826736	0.10733754088173
Merged-chr3-83885338-4	chr3	83885222	83885422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43714.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	8.27714955781511	8.28491931771705	8.88364386703456	8.32928091163835	7.93567468263854	8.07346723881389	8.44806010585069	8.14759161620182	-0.387170658905493	0.0615113697126964	0.262441874050232
Merged-chr2-161041431-3	chr2	161041327	161041527	+	803.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126509, intron 4 of 35)	intron (NR_126509, intron 4 of 35)	67659.0	NM_173368	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	3.3347731340719	3.27033657931858	3.1473627503713	3.23239154475025	3.49605963597991	3.66694450175674	3.32271950761541	3.49740170457448	0.880934339874432	0.0859221119489841	0.319398893169873
Merged-chr13-99099938-2	chr13	99099881	99100081	+	727.708374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12060.0	NR_045495	69603.0	Mm.390632	NR_045495	ENSMUSG00000100410	2310020H05Rik	-	RIKEN cDNA 2310020H05 gene	ncRNA	3.0128555715798	2.74210022547785	2.88394269253401	3.08734571200985	2.95237605372568	3.24278303139019	3.00244950896514	3.28718133761192	0.725418620024159	0.234179974492869	0.543954987592731
Merged-chr6-128135220-4	chr6	128135100	128135300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	8378.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	6.75190655495884	7.09914867830318	7.23741239906743	7.19470251067641	7.22204909331386	6.74887295605739	7.4048040402811	7.17836755026843	0.10201183208397	0.646265486053572	0.851295585787822
Merged-chr7-31116778-4	chr7	31116658	31116858	+	890.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011322, exon 6 of 6)	3' UTR (NM_011322, exon 6 of 6)	-1432.0	NM_001110252	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	4.24677441199286	4.31582229282937	5.1284814378392	4.61389541527597	4.23079171706213	4.32643321361447	4.3665035449871	4.08971680572121	-0.845955296151902	0.0500608392457559	0.231939105426913
Merged-chr5-137286800-4	chr5	137286715	137286915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1439.0	NM_009599	11423.0	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	5.86038058505916	5.77717128540302	5.53502255135139	5.9016312519385	5.66792175858342	5.76658614609349	5.50740447702515	5.64072180102739	-0.229929170115187	0.381510085256542	0.683742228786267
Merged-chr11-79142202-4	chr11	79142116	79142316	+	885.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	4257.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	4.35835819250158	4.39308363419103	4.5589371574155	4.25600022262279	4.43109486980963	4.29915808699893	4.33953058753136	4.31232634583232	-0.0805564993163531	0.83127249755144	0.935322338382222
Merged-chr12-26366117-3	chr12	26365999	26366199	+	720.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130981, intron 3 of 4)	intron (NR_130981, intron 3 of 4)	19389.0	NR_130981	75243.0	Mm.444753	NR_130981	ENSMUSG00000114048	4930549C15Rik	-	RIKEN cDNA 4930549C15 gene	ncRNA	3.49529191868342	3.64189349891367	3.68651813092833	3.6381441520534	3.07962564170677	3.11157698396038	3.06498332856896	3.20710619972529	-1.95130002004078	0.000640990901958	0.00941305785237641
Merged-chr1-92641368-4	chr1	92641281	92641481	+	817.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163425, intron 1 of 2)	intron (NM_001163425, intron 1 of 2)	567.0	NR_028108	66915.0	Mm.30179	NM_001163425	ENSMUSG00000073616	Cops9	1110002M09Rik|Myeov2	COP9 signalosome subunit 9	protein-coding	4.13141555866579	4.00295787723114	4.45209174586842	3.91454039818811	3.79742093844829	4.11169272436736	4.11367839666148	4.08317864009222	-0.272701258107792	0.537732217554849	0.791223080787503
Merged-chr2-157279062-4	chr2	157278961	157279161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019642)	promoter-TSS (NM_019642)	-37.0	NM_001355163	20014.0	Mm.22130	NM_019642	ENSMUSG00000027642	Rpn2	1300012C06Rik|AV261018|Rpn-2	ribophorin II	protein-coding	7.40356915679949	7.38696860537415	7.20437118769195	7.29355171626937	7.30075888560181	7.59100068884466	7.48860036393638	7.40943057117232	0.164094428203955	0.360362278964708	0.665793074685122
Merged-chr13-42527120-4	chr13	42526998	42527198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-153701.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	7.33806927138724	7.20722907106241	7.66365784963901	7.63659438255806	7.50387309500502	7.18050498447858	8.00846710776776	7.65022587163233	0.187286370436864	0.411959966944648	0.70726552639751
Merged-chr3-60408937-5	chr3	60408791	60408991	+	906.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63939.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	3.99805301463273	3.79992968620641	4.19434517287203	4.0250275241534	4.38211790107621	4.22580379670798	4.21984798057428	4.54531588447358	0.854900797552239	0.035654513995682	0.187514135467631
Merged-chr5-99386746-3	chr5	99386647	99386847	+	877.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-133820.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.30206887258153	3.23971386969241	3.35895970981378	3.27431411490152	3.32534539612077	3.35496909345248	3.34596176659495	3.41106787874519	0.23981515211701	0.638699913766327	0.84731839493744
Merged-chr3-139062297-4	chr3	139062181	139062381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 1 of 13)	intron (NM_001356388, intron 1 of 13)	12920.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	5.18216125101689	5.37107034590249	5.3834111591418	5.46330052498121	5.97257464032793	5.61997122265179	5.74956989994093	5.77498316809039	0.725742870915675	0.00758719902961205	0.0646920507581164
Merged-chr2-91086538-4	chr2	91086448	91086648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10130.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	7.49739087473955	7.64798742336113	7.67003058336943	7.37620040075201	7.37666170464245	7.34147177358416	7.40547437652527	7.31628260641751	-0.245635559238234	0.169088790868176	0.46161486940974
Merged-chr3-142443539-4	chr3	142443429	142443629	+	846.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47833.0	NM_019808	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	4.21910886632354	4.00826855840919	4.02652908870682	4.44492986624051	4.40281133976279	4.25139479746188	4.2869321794182	4.07524154683892	0.146818800541061	0.726312014599277	0.891034932051019
Merged-chr7-49396318-4	chr7	49396211	49396411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 3 of 37)	intron (NM_175272, intron 3 of 37)	150122.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	6.49406067776904	6.47802077910974	6.54142958386644	6.65667465628308	5.62107713612155	6.15699110592887	5.79861826412249	6.21050576696797	-0.905725394230238	0.000282366091919019	0.00482905719767031
Merged-chr18-42781692-3	chr18	42781591	42781791	+	893.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028392, intron 1 of 8)	intron (NM_028392, intron 1 of 8)	117815.0	NR_073583	72930.0	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	3.27369261334557	3.30510364273994	3.38480286779019	3.75119452884405	3.17392356855966	2.89855043464559	3.37114648660917	3.15158871221838	-1.08599298505312	0.0722807671154393	0.288875503790559
Merged-chr4-134552223-4	chr4	134552126	134552326	+	933.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029100)	promoter-TSS (NM_029100)	-60.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	4.80815041304971	4.73988292442413	4.50282880395683	4.68455905015355	4.28460377570944	4.67744354430142	4.7514796159922	4.45608029495128	-0.315362542253832	0.389910199913529	0.690126025603507
Merged-chr4-155944483-4	chr4	155944388	155944588	+	979.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284312, intron 1 of 7)	intron (NM_001284312, intron 1 of 7)	330.0	NM_001284312	140499.0	Mm.371673	NM_021402	ENSMUSG00000023286	Ube2j2	1200007B18Rik|2400008G19Rik|5730472G04Rik|AL022923|NCUBE-2|Ubc6|Ubc6p	ubiquitin-conjugating enzyme E2J 2	protein-coding	4.89843402670861	4.98717438965705	5.05627700080456	4.66742919198228	5.52242075288189	5.64011817426456	5.95572456310777	5.6606260712136	1.46218969260671	9.62820103106527e-07	3.38934580212757e-05
Merged-chr17-71127661-4	chr17	71127550	71127750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010867)	TTS (NM_010867)	-55882.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	7.29929793500487	7.26199492271688	7.48742629851778	7.66834175282666	7.08874794966217	7.16742409861665	7.73418438919624	7.29546757311788	-0.138162706135201	0.530139507619518	0.786272712386432
Merged-chr11-97343800-3	chr11	97343661	97343861	+	910.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081220, exon 7 of 11)	exon (NM_001081220, exon 7 of 11)	8312.0	NM_001081220	217143.0	Mm.32622	NM_175453	ENSMUSG00000070337	Gpr179	5330439C02Rik|Gpr158l1	G protein-coupled receptor 179	protein-coding	3.91187473683816	4.04607963625488	3.67881584661871	3.77699376974754	3.45769956717444	3.37335425170701	3.3171920884859	3.39149964603353	-1.55532513185396	0.00268539520328329	0.0293075352920119
Merged-chr8-84840701-4	chr8	84840570	84840770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001297607)	promoter-TSS (NM_001297607)	-5.0	NM_009010	19358.0	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	7.23344852021071	7.38076824414087	6.94980084590564	7.27441106078893	7.44598195429627	7.59659848506996	7.45698119956266	7.31526839147316	0.309979029658495	0.101760682053672	0.350100699851891
Merged-chr16-92874239-4	chr16	92874119	92874319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48145.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	6.74509117075731	6.49106289420028	6.31347275810792	6.68939256798156	6.31682164325107	6.16814889978814	6.62821376486275	6.41877477936051	-0.27000901752269	0.245284246129129	0.556340811778258
Merged-chr11-104361917-3	chr11	104361815	104362015	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 5 of 14)	RLTR19|LTR|ERVK	80376.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	5.49181620726118	5.09534464669308	5.27436058709222	5.11298441956001	4.21385692473696	4.29851965192379	4.42328691952218	4.9034853663345	-1.59211721260556	3.10085654799096e-05	0.000747376337529834
Merged-chr1-97718645-4	chr1	97718573	97718773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173760, intron 25 of 27)	intron (NM_173760, intron 25 of 27)	51419.0	NM_173760	227399.0	Mm.220817	NM_173760	ENSMUSG00000040648	Ppip5k2	AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433	diphosphoinositol pentakisphosphate kinase 2	protein-coding	6.90255704189461	6.77046116646442	6.84884366161646	7.32836887357263	6.82172581989374	6.82986563891354	7.14389915344209	7.17489866548891	0.00296898740931908	0.989633385861394	0.995845264327818
Merged-chr10-118737264-4	chr10	118737158	118737358	+	733.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131645.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	4.05981347879142	3.85565447983541	3.6181149135383	4.06864924049564	4.31907897747834	4.23118445663846	3.99556319629267	4.14839579057603	0.674296217997478	0.126638752100793	0.395674769095591
Merged-chr4-141541026-4	chr4	141540921	141541121	+	999.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2424.0	NM_019763	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	5.93011197646617	5.80346665692467	5.69574137985888	5.3544766049045	5.39912641907971	5.17225060842343	5.40747635828465	5.06509222601073	-0.738162901438578	0.0164285784202814	0.111965701204252
Merged-chr10-80320572-4	chr10	80320486	80320686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025521)	promoter-TSS (NM_025521)	-38.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	6.10729586302318	5.96607247735333	5.97907735116949	5.97849056533054	6.28082741791743	6.19929276427441	6.30034163660574	6.12434722785195	0.349842918149313	0.122227253520672	0.387413444121253
Merged-chr8-40852129-3	chr8	40852010	40852210	+	804.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	-10257.0	NM_007514	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	2.82562900631836	2.67825871655012	3.05032109202211	2.45440174188276	3.86415161986626	3.53686058416023	3.68002624664999	3.24237377745218	3.79134229727368	5.4912197230446e-08	2.48796644599995e-06
Merged-chr6-86401268-4	chr6	86401171	86401371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2948.0	NM_001164079	21841.0	Mm.333219	NM_011585	ENSMUSG00000071337	Tia1	2310050N03Rik|AI256674|TIA-1|mTIA-1	cytotoxic granule-associated RNA binding protein 1	protein-coding	5.71912831171385	5.17520218697214	5.42505425409657	5.48841151980702	5.73807036235289	5.68810038468246	5.94771320689893	5.53655489706148	0.461371758878152	0.101243586034743	0.349261116495284
Merged-chr3-57740053-4	chr3	57739954	57740154	+	800.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130743, intron 1 of 9)	intron (NR_130743, intron 1 of 9)	3997.0	NR_130743	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	4.25589184584646	4.0879701862465	4.51820064353937	4.89268968367383	4.48294952244991	4.43257461921834	4.64426264632031	4.1006631482471	-0.142400071385288	0.746193128907226	0.899968661443807
Merged-chr7-98543032-3	chr7	98542938	98543138	+	789.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	48816.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	3.82008293571782	3.93151394523439	3.76654823999218	3.71509685165611	4.4077986641843	3.99414720686384	3.75180075872672	3.81845880348019	0.625089383060319	0.180207609716587	0.47655907024478
Merged-chr12-99315125-3	chr12	99315005	99315205	+	923.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 3 of 5)	intron (NM_183186, intron 3 of 5)	134969.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	3.39269685363982	3.46482719693828	3.70237852910411	4.06472080457588	3.28149119444891	3.17576907469951	3.3804427360091	3.1357192624976	-1.56941253034389	0.00697557701749407	0.0607060272072637
Merged-chr11-100860373-4	chr11	100860245	100860445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164062)	promoter-TSS (NM_001164062)	-139.0	NM_001164062	20850.0	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	7.32808834144824	7.43950860980287	7.12717723654198	7.18353288212525	6.99952310351055	7.19573507085984	6.83703828328427	6.73283053962175	-0.439645171884249	0.0304751534973821	0.168966423959352
Merged-chr14-31596660-4	chr14	31596573	31596773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-19290.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	6.89788800776605	7.2931216208875	7.36942167684097	7.60137584431987	7.17560391594586	6.80997264202546	7.46254109521458	7.40288931532129	-0.117264307347809	0.618458772687044	0.836000920352511
Merged-chr1-86526530-4	chr1	86526442	86526642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360831)	promoter-TSS (NM_001360831)	-15.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	9.11525945778383	9.08832588204026	8.97748231770978	9.07067122271697	8.81106442911427	9.03478778449491	9.02073014552687	8.79058366424914	-0.183151430055095	0.209906597242855	0.514477520923837
Merged-chr16-76283897-1	chr16	76283797	76283997	+	741.0	f0_c57.idr	Intergenic	Intergenic	89152.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	2.58272951891773	2.81260023233766	2.79184810595408	2.75116673426788	2.8383541600075	2.96267838822533	2.84450622761668	3.02511476146447	0.806557542464557	0.191310079229446	0.490712076737757
Merged-chr6-85141225-3	chr6	85141126	85141326	+	761.422241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3462.0	NM_011467	20751.0	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|Gm10328	sepiapterin reductase	protein-coding	4.10022492032914	4.25246319759637	3.90518457826981	4.00653144875102	3.7404363495815	3.97301991202347	3.94049179957847	4.30659444776115	-0.189716717892374	0.669992864829285	0.863782324319574
Merged-chr4-155891412-2	chr4	155891312	155891512	+	981.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207223)	promoter-TSS (NM_207223)	350.0	NM_001033490	433813.0	Mm.259270	NM_001033490	ENSMUSG00000051557	Pusl1	2810021I11Rik|AI853843|D18346	pseudouridylate synthase-like 1	protein-coding	3.48021404741597	3.76812897343211	4.05829202045873	3.86646462364099	3.94589601407263	3.7833506582338	3.70677736711697	4.05569169482671	0.200489356052266	0.671985058602773	0.864986538211932
Merged-chr10-80676050-4	chr10	80675956	80676156	+	953.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021462, intron 1 of 13)	CpG-1308	237.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	6.63458125998006	7.43132018464144	5.97263556302605	5.10121627599954	7.49553338589301	7.79113355102881	6.22152251396553	6.29132028458311	0.767343563238631	0.343569267864913	0.65224333888351
Merged-chr16-30395302-4	chr16	30395178	30395378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-6748.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	5.78898205067833	5.75625441748226	5.56055542826056	5.88314349379149	5.57836578598886	5.5268491629187	5.89199855676859	5.61121727190219	-0.17499294637104	0.511024343690801	0.775132664017528
Merged-chr12-117853532-4	chr12	117853438	117853638	+	813.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146040, intron 1 of 9)	intron (NM_146040, intron 1 of 9)	9677.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	3.57959530369232	3.99104558571697	3.75472909378459	4.10554701377266	3.99737990742223	3.87334923453697	3.93930974343725	3.8060464757515	0.0514980724451866	0.912227211461904	0.967199155316195
Merged-chr17-67246087-4	chr17	67246041	67246241	+	845.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	MER2|DNA|TcMar-Tigger	108318.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	3.41969401887524	3.19503967692134	3.59157729249636	3.51548402391143	4.07918447881998	3.70954937024494	3.40784024214387	3.64192690662194	0.938046720869297	0.0766702124349775	0.299293026813056
Merged-chr11-118145935-4	chr11	118145829	118146029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16710.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	8.52529405095309	8.77707929374757	8.5878039839371	8.42475429000368	8.53322512080105	8.51177641567445	8.52992291392823	8.32914958197266	-0.129114587450788	0.42002277471836	0.713050970274712
Merged-chr11-115071958-4	chr11	115071943	115072143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-10004.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	6.61577813185047	6.77364857954944	7.12714611956259	6.32109985115296	6.31655528318424	6.79360434827498	6.53517749847102	6.77441424131012	-0.170034086250976	0.511526661810083	0.775482659180767
Merged-chr10-111506440-4	chr10	111506322	111506522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009344, exon 1 of 2)	exon (NM_009344, exon 1 of 2)	136.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	8.25299810250536	8.84952105895504	8.39036569645224	8.23735030393563	8.67836158201088	8.82925679049949	8.85553734513025	7.97569544716445	0.217535750581927	0.350681671329828	0.658186562602986
Merged-chr16-24393074-7	chr16	24393041	24393241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178665)	promoter-TSS (NM_178665)	-209.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	5.7968791639446	5.84546203950487	5.62574488967292	5.77370076745976	5.41221802434687	5.44264967293649	5.45929153867285	5.94495809253149	-0.310581959378625	0.264336956317866	0.576455127446606
Merged-chr11-72607190-4	chr11	72607065	72607265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025985)	promoter-TSS (NM_025985)	-96.0	NM_025985	67128.0	Mm.458052	NM_025985	ENSMUSG00000020794	Ube2g1	2700059C12Rik|AI256795|AU014992|AW552068|D130023C12Rik	ubiquitin-conjugating enzyme E2G 1	protein-coding	8.3298136831683	8.52661839134689	8.15714378606587	8.07099167083538	8.29037252438366	8.21056801920345	8.37572524583323	8.11384748455248	-0.0340675334815665	0.845846800825346	0.941609781606933
Merged-chr15-30617073-4	chr15	30616984	30617184	+	984.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	MLT1B|LTR|ERVL-MaLR	-422042.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	4.94959523073271	4.84747681281246	4.8078192429801	5.20527262703934	4.85618520671832	4.64498787393768	4.78522381029947	4.87786931082794	-0.367973133562326	0.275943971285471	0.587995926599465
Merged-chr13-21200655-4	chr13	21200552	21200752	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	20721.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	5.22554646784852	5.17474793955627	5.31665213948635	5.15659956053839	5.09843566811526	5.57231544676783	4.96348138723573	5.28361492875635	0.0493495552061646	0.873130158651488	0.952434161906071
Merged-chr6-114045116-4	chr6	114045010	114045210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3030.0	NM_009723	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	6.24739172276469	6.67962623960084	6.65231733522627	6.5534892679106	5.53968391233428	5.86450556831653	6.28995094078011	6.01504205841453	-0.914754984844201	0.000597282128584809	0.00890530888783789
Merged-chr1-130462608-4	chr1	130462522	130462722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010016, exon 1 of 10)	exon (NM_010016, exon 1 of 10)	122.0	NM_010016	13136.0	Mm.101591	NM_010016	ENSMUSG00000026399	Cd55	Daf|Daf-GPI|Daf1|GPI-DAF	CD55 molecule, decay accelerating factor for complement	protein-coding	5.96179706615426	6.13394626171981	6.57515712834134	6.32732422181464	5.77854023973163	6.09313236966189	6.21987792107371	6.00413192382706	-0.379460426052281	0.143618665745621	0.422016393441485
Merged-chr2-104493608-4	chr2	104493506	104493706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010434, intron 1 of 15)	CpG	883.0	NM_010434	15259.0	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	7.07409129501703	6.87631208356014	7.40072022023635	7.14133567046932	7.07767621138232	6.92666473013476	7.01557978196298	7.19564957524124	-0.102891480126258	0.612679393340235	0.832832725096038
Merged-chr1-170277248-3	chr1	170277169	170277369	+	716.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012009)	promoter-TSS (NM_012009)	-49.0	NM_012009	26904.0	Mm.57009	NM_012009	ENSMUSG00000102418	Sh2d1b1	EAT-2|EAT-2A|Eat2|Eat2a|Sh2d1b	SH2 domain containing 1B1	protein-coding	3.59145881606671	3.58269428027698	3.90684762923965	3.7007224653133	3.58186175365563	3.28526228645296	3.16403868026749	3.17194850881532	-1.27992457316753	0.0230396747085644	0.140523782378677
Merged-chr7-140141521-4	chr7	140141431	140141631	+	848.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199301, intron 3 of 10)	intron (NM_199301, intron 3 of 10)	3967.0	NM_199301	212508.0	Mm.296088	NM_199301	ENSMUSG00000039018	Mtg1	Gm169|Gtpbp7	mitochondrial ribosome-associated GTPase 1	protein-coding	4.22352986479849	3.84192508056076	4.18139783694486	4.39694795353078	4.00043431703835	4.11708417394677	3.87405739938833	4.04119899610868	-0.466330210432758	0.284857831463284	0.596630637527221
Merged-chr5-17880064-4	chr5	17879969	17880169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	8890.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	8.42425811742518	8.67119962167775	8.83860400929	8.38535482879368	8.287560049417	8.5562004562812	8.14923924631163	8.10531885523979	-0.384207422573572	0.0389840484213907	0.198387472838076
Merged-chr1-37487159-4	chr1	37487072	37487272	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024017, exon 1 of 1)	non-coding (NR_024017, exon 1 of 1)	1433.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	5.10310813250057	4.58590789537598	5.10398239437088	4.77392384635326	5.02645403606234	4.80613833146633	4.84623262270428	5.10044650081873	0.114163414730932	0.738137278504041	0.896665270093572
Merged-chr6-122566914-2	chr6	122566814	122567014	+	627.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13105.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	2.45240796703316	2.46296317645978	2.59640691340493	2.6018323202687	2.78126845366739	2.76898430295224	2.77565853417205	2.89744428617597	1.32581016127084	0.0443704588046539	0.214788145216027
Merged-chr6-4978432-4	chr6	4978298	4978498	+	968.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	75078.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	4.32736122378502	3.84645601993269	4.36952770907046	4.6842884786265	4.53218184607795	3.80977155243329	4.17656665119575	4.23815222213529	-0.307396400763467	0.522241052198329	0.781906056970297
Merged-chr4-141031930-4	chr4	141031832	141032032	+	922.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145958, intron 19 of 35)	intron (NM_001145958, intron 19 of 35)	21295.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	4.60160543373257	5.12243952177892	4.60231866457119	4.77851072339582	4.97259306619261	5.01767734304687	4.95931950300023	4.91261790628503	0.333503218016551	0.323577574195291	0.635057260507972
Merged-chr19-12833323-4	chr19	12833214	12833414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001361971, exon 9 of 9)	exon (NM_001361971, exon 9 of 9)	-28463.0	NM_146702	258697.0	Mm.223132	NM_146702	ENSMUSG00000046272	Olfr1444	MOR202-4	olfactory receptor 1444	protein-coding	5.8630846613043	5.96685070745665	5.66974685098851	6.12916704281289	5.56298280323519	5.58754804221141	5.64115410190071	5.71716882882005	-0.509112453808654	0.0532243624135175	0.240613330722881
Merged-chr17-45582972-4	chr17	45582880	45583080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	9413.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	6.34021046997599	6.18390570022339	5.9196889438028	5.6492862332678	6.65525387339312	6.55238233013908	6.36113258893938	6.60947590763503	0.784360838665535	0.00212947224330299	0.0245463489564475
Merged-chr8-25034760-4	chr8	25034661	25034861	+	852.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081187, intron 3 of 8)	B2_Mm2|SINE|B2	4201.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	4.19800620340453	4.27221144764174	3.95873204039654	3.8856020327193	4.24538175773112	4.23311946150078	4.30331076452643	3.78852839137382	0.206505094253858	0.636262363131	0.846074412168523
Merged-chr13-111490473-1	chr13	111490373	111490573	+	1000.0	f0_c57.idr	promoter-TSS (NM_001122963)	promoter-TSS (NM_001122963)	-346.0	NM_001361924	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	7.75042632395727	7.9780188053691	8.33148835146651	7.75324373891127	7.75638821104896	8.27766716009342	7.64687955969904	8.11921542891727	0.000574432215563285	0.997916357006791	0.99906319748704
Merged-chr17-28720926-3	chr17	28720812	28721012	+	956.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168513, intron 3 of 11)	intron (NM_001168513, intron 3 of 11)	28344.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	4.34729677059965	3.97490238826022	4.31024640172272	4.21885215327536	3.96813329638824	3.73203391026681	3.83767387218015	3.8506814016022	-0.981141262791845	0.0261282932430564	0.153003251140781
Merged-chr4-155891783-4	chr4	155891678	155891878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207223)	promoter-TSS (NM_207223)	-16.0	NM_001033490	433813.0	Mm.259270	NM_001033490	ENSMUSG00000051557	Pusl1	2810021I11Rik|AI853843|D18346	pseudouridylate synthase-like 1	protein-coding	6.16362077969098	6.15328305543539	5.75139008363209	5.93472446065932	6.37876441114776	6.23834846910901	6.13314596430314	6.10016294791764	0.332881743049623	0.169509054179666	0.462161476887795
Merged-chr4-59438195-4	chr4	59438081	59438281	+	946.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 1 of 16)	CpG	452.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	4.97199174562826	4.77657346859323	4.87221475379288	4.95270738017483	4.31501499558304	4.89855604103743	4.6220224177812	4.90332120862376	-0.42543696203772	0.236368739201221	0.546391611054939
Merged-chr12-55821099-4	chr12	55820990	55821190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019994, exon 1 of 41)	5' UTR (NM_019994, exon 1 of 41)	426.0	NM_019994	56784.0	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	6.83538001768812	6.92311071602493	6.87680258807269	6.65356866963155	6.56433672824952	6.79070048638567	7.02493270080862	6.71776177977072	-0.0552254311689454	0.79558791520369	0.920897975671128
Merged-chr11-59637183-4	chr11	59637101	59637301	+	900.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24235.0	NM_001011740	257886.0	Mm.457883	NM_001011740	ENSMUSG00000044061	Olfr225	MOR256-51	olfactory receptor 225	protein-coding	4.2959001725381	3.99506468053395	4.00446792009802	4.29153767992712	4.26969453009324	4.42435263763528	4.31965229121112	4.53117940292371	0.53384176926457	0.181276013299931	0.47780135214223
Merged-chr19-45749269-5	chr19	45749124	45749324	+	988.313416	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008723, intron 1 of 5)	CpG-7591	339.0	NM_008723	18150.0	Mm.1406	NM_008723	ENSMUSG00000056209	Npm3	Nub1	nucleoplasmin 3	protein-coding	3.65035099677434	3.51373648648715	3.84992096064679	3.34725243628463	3.51023681442401	3.92451409484135	3.7862010089265	3.64878432555257	0.404238897667426	0.418354467993848	0.711899703013079
Merged-chr9-13574342-4	chr9	13574254	13574454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45635.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	5.45774837369435	5.42691284597873	5.80874231955267	5.85442155753688	5.31789749929557	5.3484957457727	5.37289592573281	5.66646982441958	-0.400867054673402	0.168068613468561	0.460060602164315
Merged-chr15-99388244-4	chr15	99388197	99388397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4650.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	7.30725653562188	7.40799157091839	7.48344865468867	7.33339641775643	7.40696516320828	7.08443931372197	7.28245248061387	7.30342599299117	-0.13505007808717	0.457159873422813	0.740364738964964
Merged-chr10-62508612-4	chr10	62508461	62508661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011157)	promoter-TSS (NM_011157)	-804.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	4.69228953077756	4.77496774492941	4.73143815727848	4.78594313389985	5.00896048051998	4.65861347833783	4.54986829330722	4.65046375407459	-0.0118112698335165	0.972950630568693	0.990282195228149
Merged-chr7-29768485-4	chr7	29768377	29768577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023750)	promoter-TSS (NM_023750)	-75.0	NM_023750	74352.0	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	7.87362101489007	8.09017757783355	7.73687267550894	7.5105036187221	7.86963721537437	8.00045837325257	7.76228990790501	7.72347742278718	0.0388413026278801	0.84089874194872	0.939436873709166
Merged-chr4-12084150-4	chr4	12084087	12084287	+	947.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110955, intron 2 of 28)	RodERV21-int|LTR|ERV1	3770.0	NM_177861	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	4.0896506765132	4.00745887692666	3.77147718995723	3.91327597920364	4.55233677042481	4.21549320761731	4.28638105624372	3.8281441308534	0.78833844168781	0.0746830831463389	0.294687464675052
Merged-chr11-95729123-3	chr11	95729024	95729224	+	854.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5538.0	NR_028263	320616.0	Mm.428140	NM_177209	ENSMUSG00000075596	B130006D01Rik	-	RIKEN cDNA B130006D01 gene	ncRNA	3.85090524930628	3.4319959131323	3.14411306458566	3.04780424494054	3.58991041068182	3.39622146956133	3.60694176796309	3.66965913228472	0.551345979489498	0.335409046641893	0.645812858302993
Merged-chr11-117878418-3	chr11	117878335	117878535	+	949.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4909.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	4.30410324188058	4.23868498416104	4.30477305424868	4.79120465873211	3.88126146502662	4.19105655061454	4.09990893619485	4.42653409868892	-0.707193460140177	0.105909052502477	0.358515263616961
Merged-chr8-88637791-4	chr8	88637690	88637890	+	983.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1662.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	4.88554273858898	5.16574774318595	4.84675729459367	4.83308522428162	5.21340081733741	5.61564247806009	5.04321531783601	5.19315225774965	0.647591766435814	0.044213355753368	0.214468509333773
Merged-chr17-27825107-4	chr17	27825001	27825201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4559.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	5.6377240295156	5.70496564643647	5.25771227552688	5.52872624185338	5.56827700160165	5.65219809064222	5.81814919483998	5.41418835981519	0.126992053977198	0.648991796612966	0.852504153384524
Merged-chr12-72389056-1	chr12	72388956	72389156	+	771.0	f0_c57.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	19998.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	3.00376073566646	2.92957461434589	3.65737768034263	3.1665279712571	3.50612911217576	3.67211928888554	3.83172963584732	4.29498673139701	2.05133626079835	0.0764214559817336	0.298616755342765
Merged-chr10-110920109-4	chr10	110920042	110920242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007792)	promoter-TSS (NM_007792)	-34.0	NM_007792	13008.0	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	8.10433834859844	8.1652431669636	7.99411494516804	8.18639918199271	7.95881507120688	7.96302417618884	7.98296477062339	8.11277170714436	-0.14719786404724	0.349202556779598	0.65679883028286
Merged-chr14-9828871-3	chr14	9828790	9828990	+	659.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 7 of 9)	intron (NM_001360141, intron 7 of 9)	-55205.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	2.73869140837745	2.69984975953696	2.96315112569857	2.95599089967824	2.46998264569676	2.57023150520718	2.6023287266735	2.46682467087203	-1.75020836529012	0.0145995250110124	0.102799683484031
Merged-chr11-116624295-4	chr11	116624195	116624395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167680)	promoter-TSS (NM_001167680)	-43.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	7.08896668343712	7.43793822684663	6.96532684193776	6.62153970078144	7.28964329309238	7.33625361005489	6.9430946049672	7.10874565207379	0.17324065172348	0.466604373376631	0.746420287776482
Merged-chr11-120352807-4	chr11	120352674	120352874	+	969.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4096.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	4.89176502719756	4.87973557144518	4.38636531334998	4.77303267821062	4.76192841420173	5.02992197299982	4.72242595132085	5.16930112416244	0.359260230872541	0.310562558950826	0.622648313554358
Merged-chr2-91965048-4	chr2	91964942	91965142	+	930.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1479.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	4.43575326877168	4.36999481841327	4.19136335893258	4.86487167580267	4.75989710472069	4.42384101623839	4.72912725421134	4.81667835210621	0.386688109067459	0.337110259046855	0.646924549627673
Merged-chr7-127471376-4	chr7	127471274	127471474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145589)	promoter-TSS (NM_145589)	-240.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	7.37064073081128	7.6936635476814	7.19041452144482	7.18630899634733	7.52255030925868	7.28489598122653	7.1993656324784	7.23048917631997	-0.0701484210017206	0.735124740275827	0.895431262597044
Merged-chr2-59160757-4	chr2	59160653	59160853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026361)	promoter-TSS (NM_026361)	-70.0	NM_001362394	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	8.07764018807436	8.07301311796876	8.15462592126458	8.36870455488065	8.02684452530378	7.97339131535723	8.39383097965421	8.03398863300037	-0.0807628056614987	0.651772929630611	0.854186462869977
Merged-chr2-158179679-2	chr2	158179579	158179779	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12329.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	3.05238847545242	2.63172175669002	2.84343826573719	2.52879792904069	2.60948616310053	2.47213856211331	2.65099636093906	2.52099244823216	-1.04914137034464	0.142408237220038	0.419990715437541
Merged-chr4-44169327-4	chr4	44169216	44169416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1033.0	NM_001038993	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	6.47713947289779	6.14043164221144	5.90697863326685	6.51583883618684	6.25589533462893	6.15727104058703	6.14373894561379	6.35771465696663	-0.0980721674427213	0.696313101490174	0.877172308963588
Merged-chr15-58933777-4	chr15	58933669	58933869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175151)	promoter-TSS (NM_175151)	-39.0	NM_175151	69694.0	Mm.383230	NM_175151	ENSMUSG00000050891	Tatdn1	2310079P03Rik|CDA11	TatD DNase domain containing 1	protein-coding	7.21594059469112	7.39995827494357	7.00339962505507	7.25684715117099	7.12356067423861	7.19356774117535	7.38165051319436	6.91834994201451	-0.0911677449716483	0.649698813650363	0.852865239046514
Merged-chr8-122585547-1	chr8	122585447	122585647	+	892.6666869999999	f0_balb.idr	intron (NM_001193645, intron 9 of 11)	intron (NM_001193645, intron 9 of 11)	-8640.0	NM_009698	11821.0	Mm.1786	NM_009698	ENSMUSG00000006589	Aprt	C85684	adenine phosphoribosyl transferase	protein-coding	4.19447295960601	4.22766142586817	4.31670043795045	4.20950887801326	3.7116035700133	3.7999577496418	3.60278853773381	4.23422309353493	-1.03258977933379	0.024516565462101	0.146434892424845
Merged-chr11-22859130-4	chr11	22859097	22859297	+	978.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	CpG	538.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	4.28604644055113	4.47292962991362	4.23949943870026	4.39907958116619	4.50512460464148	4.54783966054111	4.26812018926294	4.45702281851384	0.212677127476491	0.569043722286481	0.809191633255217
Merged-chr9-119265702-6	chr9	119265616	119265816	+	917.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359582, intron 8 of 18)	intron (NM_001359582, intron 8 of 18)	-34024.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	3.32253973294362	3.32613469269345	3.65689781593335	3.57432877105755	3.5138658136564	3.72408455857817	3.43121875963834	3.60481536857275	0.281541444400546	0.577067747140215	0.813924639099529
Merged-chr8-84968758-4	chr8	84968655	84968855	+	905.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011563)	promoter-TSS (NM_011563)	-867.0	NM_001317385	21672.0	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	4.44775937315226	4.39004115162748	4.79175764534807	4.12115630602828	4.75410501384656	5.32240677771943	5.23311743691594	5.11901884674126	1.40013036176614	0.000180527375477787	0.00334020225087949
Merged-chr12-72665238-2	chr12	72665128	72665328	+	756.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_025522)	promoter-TSS (NM_025522)	-400.0	NM_025522	66375.0	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	4.10263258504136	3.85265367914866	3.89320126717538	4.35967281032823	4.34438171242285	4.41117182454915	4.17828528456259	4.28126475578039	0.538485065455066	0.212360051069821	0.517337808032678
Merged-chr11-48823803-4	chr11	48823701	48823901	+	952.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Val-GTY|tRNA|tRNA	-2337.0	NM_053166	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	4.02715091696917	3.78150184089141	3.8257451335733	4.122310851648	4.28736140422931	3.94606548668279	4.14178409656571	3.76796798066727	0.27422487198532	0.545499995460176	0.795940029589181
Merged-chr13-112799979-4	chr13	112799908	112800108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008247)	promoter-TSS (NM_008247)	-769.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	6.47789216759955	6.92881650872926	6.17676716565044	6.82428328923207	7.20654048701938	7.09087281937445	6.59719838547332	6.71837009460788	0.404191255795799	0.122679456843317	0.388184087959568
Merged-chr2-13597188-3	chr2	13597085	13597285	+	838.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22874.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	3.05607537398356	3.39677444794914	3.22886255280323	3.06508276396801	2.9209530778712	2.81405746622278	3.31732270342188	2.85682261812548	-0.808855879920442	0.198204329949182	0.499715972864178
Merged-chr6-122650755-4	chr6	122650653	122650853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24329.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	7.44837780918319	7.61947374097918	6.95815186877287	6.61686417073757	7.44267416305175	7.62666079032915	7.56015891257082	6.85380733476989	0.253391122491941	0.361547395433884	0.666799563679493
Merged-chr1-55809377-1	chr1	55809277	55809477	+	593.333313	f0_c57.idr	Intergenic	Intergenic	-121864.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	3.07996268253098	3.24107275414705	3.29041852602389	3.2804484510342	3.69980620196333	3.80304186996741	3.51387337233059	3.94016066697184	1.69465670963879	0.00119580948229357	0.0155265456293641
Merged-chr2-129145159-3	chr2	129145049	129145249	+	824.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15449.0	NM_025395	66170.0	Mm.40621	NM_025395	ENSMUSG00000037938	Chchd5	1110027L01Rik|AW045710	coiled-coil-helix-coiled-coil-helix domain containing 5	protein-coding	3.85346514171246	3.56524094545526	4.06479027262822	3.57397415583348	3.45033702845056	3.66154288398223	3.40971587006182	3.70600521865828	-0.66499782189727	0.19163387123876	0.490978459689893
Merged-chr19-12464346-4	chr19	12464260	12464460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010821, exon 2 of 2)	3' UTR (NM_010821, exon 2 of 2)	3581.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	6.49760349023257	6.79708217838899	7.07605612193918	6.96382933642662	6.68794931806476	6.6933888734945	6.53315406116393	6.36575472654688	-0.395150264822559	0.0809858050904213	0.308756755250728
Merged-chr15-3259304-4	chr15	3259193	3259393	+	962.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-11474.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	5.87304033714226	5.69813377474271	6.13763316687668	5.76107389526553	5.7569295097643	5.19244088665054	5.93068635701407	5.97783685375703	-0.192271953664091	0.514099757384963	0.776898400611478
Merged-chr5-124037094-4	chr5	124037000	124037200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4840.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	5.62975412812985	5.34236113336022	5.70899557069103	5.67907114558219	6.23382453377661	5.57448825701601	5.79979130018785	5.9352871023804	0.527051621972115	0.0620383922847777	0.263474386899653
Merged-chr17-28716323-3	chr17	28716216	28716416	+	730.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168513, intron 3 of 11)	MTE2a|LTR|ERVL-MaLR	23748.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	3.24521233834617	3.36377069877651	3.40845406949101	3.6763672824674	3.04289200063135	3.0993423475998	3.11407358229982	3.05798380852199	-1.44391628122015	0.0126530943290636	0.0932922578605256
Merged-chr18-53256377-4	chr18	53256292	53256492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	L1MC5|LINE|L1	10730.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	6.48450022892699	6.20754876942132	6.43718733810927	6.64883785246073	6.05600814066698	5.81977982110204	6.38768157673976	6.07287965122224	-0.546376979663717	0.02781907449963	0.159405402013296
Merged-chr18-65695567-4	chr18	65695468	65695668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2700.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	7.94591575332863	7.84912351614892	8.23253528471001	8.10485713072581	7.64798253045351	7.41318916535554	7.97665353996862	8.15875595620827	-0.273404416553528	0.193928562422057	0.494240436271961
Merged-chr4-139131089-4	chr4	139130986	139131186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033745)	promoter-TSS (NR_033745)	27.0	NM_001163006	433771.0	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	7.5516331063166	7.41667159022651	7.03670521934936	7.21997317300035	7.53532524580068	7.89549175794792	7.31944048055267	7.13061799302079	0.247235675213485	0.279482531483026	0.591495502480744
Merged-chr3-121545661-4	chr3	121545572	121545772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13328.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	5.50606280065526	5.51104471696209	5.32620131664965	5.90892887678062	5.61855450042046	5.47124835104279	5.68488724126702	5.58469132785264	-0.0213055159572538	0.941497495217081	0.978922922650201
Merged-chr17-26095438-4	chr17	26095346	26095546	+	850.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019731)	promoter-TSS (NM_019731)	24.0	NM_019731	56520.0	Mm.41787	NM_019731	ENSMUSG00000024177	Nme4	2610027N22Rik|2810024O08Rik|5730493H09Rik|NM23-M4|Nm23M4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding	3.92523635834631	4.35805977437532	3.81677627937165	4.34914987926693	4.08205008259306	4.04743813546446	3.91002161148501	3.9747719510041	-0.37469611019761	0.403791351942586	0.700994235260636
Merged-chr4-129818899-4	chr4	129818845	129819045	+	975.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1534.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	4.4457392386545	4.10236001298567	4.48543157368677	4.60546318426907	4.37773784293288	3.91428049207095	3.90078344572261	4.6270091515091	-0.427208899101423	0.346393667777046	0.654668970506009
Merged-chr19-4012845-4	chr19	4012772	4012972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133666)	promoter-TSS (NM_133666)	-117.0	NM_133666	17995.0	Mm.29842	NM_133666	ENSMUSG00000037916	Ndufv1	CI-51kD	NADH dehydrogenase (ubiquinone) flavoprotein 1	protein-coding	7.0984327539261	7.19065379637868	7.09966621266715	6.89482403330041	7.20031897533224	7.21585651169947	7.22969625880427	7.12974228440851	0.177281682454673	0.342684643626439	0.6516462545027
Merged-chr11-73131210-4	chr11	73131126	73131326	+	891.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 22 of 30)	intron (NM_001361245, intron 22 of 30)	7068.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	3.90893744611562	3.98846200702095	4.06319704838586	4.15199999101123	4.24654146542434	4.13687477366116	4.22402855371591	4.19796251234413	0.414829862424763	0.305567040039589	0.617941664868378
Merged-chr4-115828492-4	chr4	115828398	115828598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175308, intron 1 of 3)	intron (NM_175308, intron 1 of 3)	406.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	6.72560773100715	6.96409027024764	6.85433190052939	6.69001337364713	6.99918065434039	6.69412012501874	7.00615718396968	6.56339498189192	0.0417743778035843	0.846348795868232	0.941927981530162
Merged-chr11-46785177-3	chr11	46785059	46785259	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-25640.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	3.58035813321282	3.83999318163387	3.80792321567279	3.10376616508453	5.42320573663677	4.90640780035647	5.49874944267176	5.21154472618734	4.28307200009071	6.38871999474381e-22	2.73941385846909e-19
Merged-chr12-24710331-4	chr12	24710235	24710435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009104, intron 4 of 9)	intron (NM_009104, intron 4 of 9)	2081.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	6.26004219760696	6.04650768098565	5.75144953576335	5.52029072773104	6.33563129381454	6.43600489971016	6.19211911172482	6.34461071595919	0.652782533146502	0.0145448334818454	0.102625565266086
Merged-chr3-144718730-4	chr3	144718626	144718826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 1 of 10)	intron (NM_001282037, intron 1 of 10)	1609.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	5.97160493591034	6.13151689739383	6.98970844768569	6.30065476916798	6.70401134757677	6.15234687595102	6.45447981155649	6.19168222059066	-0.00684113587907717	0.981765314191126	0.993492379943959
Merged-chr15-75857266-7	chr15	75857224	75857424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5015.0	NM_026960	69146.0	Mm.27385	NM_026960	ENSMUSG00000022575	Gsdmd	1810036L03Rik|AW558049|DF5L|Dfna5l|Gsdmdc1|M2-4	gasdermin D	protein-coding	6.1818331245044	6.27468795754216	6.38438537761175	6.04544243547587	5.99753377235095	6.27720924736934	6.02680605619147	6.49285393625881	-0.015610831525811	0.949717008924833	0.982014395802619
Merged-chr6-70790500-3	chr6	70790383	70790583	+	948.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009075, intron 1 of 8)	intron (NM_009075, intron 1 of 8)	1692.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	4.41610764783577	3.48384421170376	3.61206280266447	3.90785478641878	3.47525518447503	3.73233718100485	3.53876129219364	3.92270768740563	-0.658996010751769	0.225129638598788	0.533502988868384
Merged-chr6-91715220-4	chr6	91715115	91715315	+	943.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	31148.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	4.82351998825971	5.06021202641149	5.22669016322471	5.78670149507643	4.59936391713446	4.700207543007	5.0807430783198	4.56120902697717	-1.06225309911174	0.00655472553841269	0.0579501935349173
Merged-chr17-15527345-4	chr17	15527267	15527467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008799)	promoter-TSS (NM_008799)	-66.0	NM_008799	18567.0	Mm.323	NM_008799	ENSMUSG00000014771	Pdcd2	AI528543|Pcd2|RP-8	programmed cell death 2	protein-coding	7.52996607983666	7.731885541488	7.6633053492154	7.73282548643513	7.76020900878705	7.51894798323625	7.98514736076662	7.31421814957824	0.00397407873070972	0.984154292528671	0.994237242628259
Merged-chr8-120744633-2	chr8	120744533	120744733	+	897.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 3 of 8)	intron (NM_001301811, intron 3 of 8)	5994.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	3.14873734617199	3.08285127637864	3.20380239343773	2.86833959395278	3.09973841351508	3.01197184614011	2.95989963433803	3.03084260263736	-0.175572573406618	0.764285022846434	0.907569734027842
Merged-chr11-50038980-4	chr11	50038899	50039099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	13668.0	NM_001290750	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	6.35506347602457	6.45185841889872	6.16664966014509	6.26084598334316	6.36484717869024	6.42153796162051	6.11465556825094	6.0777577318249	-0.0824236864153319	0.721346504958392	0.888753092785481
Merged-chr5-101938743-4	chr5	101938651	101938851	+	887.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 13 of 66)	intron (NM_172882, intron 13 of 66)	131170.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	4.38975483751161	4.24020742951436	4.11902314955334	4.30336901714056	4.13693817111594	4.24468145395823	4.65691204085637	4.16592405258252	0.112224362979824	0.781943152972318	0.915185669649708
Merged-chr10-120977993-4	chr10	120977896	120978096	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081193, exon 1 of 13)	exon (NM_001081193, exon 1 of 13)	1334.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	4.78111397868715	4.40693040523185	4.64553999264129	4.54096354218659	4.57259621598056	4.44721806149583	4.15342623065775	4.05997632671197	-0.597487944530781	0.136524177720139	0.411042630338623
Merged-chr1-157427119-3	chr1	157427026	157427226	+	929.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14531.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	4.90835281915682	4.33249120446288	4.81581234927551	4.73647042726438	4.39886871828929	4.3319185071215	4.28543809139252	4.25224226610377	-0.89099356684182	0.0211704395114945	0.132912360280164
Merged-chr5-124021328-4	chr5	124021229	124021429	+	896.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	10931.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	4.13884774850768	4.09385924984482	3.88277763999494	4.63269920446683	4.27284004032141	4.00444609862709	4.02604375742139	4.22674338657593	-0.24425222378437	0.593885637121372	0.82320082889646
Merged-chr15-27702967-4	chr15	27702909	27703109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21467.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	6.13290601781123	5.46881784897722	6.13399739166537	6.40631757112731	5.78605559663506	5.46312735191448	5.6302960131132	5.96910201008166	-0.576768880093653	0.0601019166712698	0.258770525450297
Merged-chr9-45547335-3	chr9	45547220	45547420	+	885.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-116088.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	2.86083745774855	3.11124347397568	3.0884620436768	2.85460821041958	3.5858788346134	3.5753576624024	3.49212351360747	3.86097650685774	2.44212235091715	1.13220011255642e-05	0.000308061436588888
Merged-chr15-52712379-4	chr15	52712281	52712481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027212)	promoter-TSS (NM_027212)	-64.0	NM_027212	69790.0	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	8.10131086177345	8.1070431862271	7.97410476943152	8.46167197751543	8.22039090952374	8.28674930904955	8.47546848358684	7.85708409852986	0.0589066823316206	0.767165406565276	0.908913987857545
Merged-chr5-26537909-4	chr5	26537823	26538023	+	901.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44609.0	NR_029445	75942.0	Mm.50087	NR_029445	ENSMUSG00000029044	4930584F24Rik	1700001J09Rik|4930522C06Rik	RIKEN cDNA 4930584F24 gene	ncRNA	4.69594845516993	4.51678387297839	5.18856005881283	4.72552946071685	4.28455876473665	4.13855866436178	4.16145517993472	4.06672885341954	-1.46224097409905	0.000381892790216027	0.00619196968446164
Merged-chr6-110080927-4	chr6	110080807	110081007	+	796.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-564605.0	NM_001346640	108073.0	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	3.69148931147967	3.45970181712602	3.69199903566304	4.15953022193763	3.74744979493427	3.69850178125073	3.72821138592007	3.52177628591652	-0.348512171126963	0.499332275613179	0.76829699895959
Merged-chr6-120037578-2	chr6	120037478	120037678	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001199083, exon 1 of 28)	exon (NM_001199083, exon 1 of 28)	1077.0	NM_001185020	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	3.15945398683414	3.09194216115127	3.4173067195158	2.65873740784086	3.1696532392255	2.87324767488247	2.96638858838424	3.15811607290441	-0.228672631770328	0.726518493342381	0.891109385125747
Merged-chr9-119266192-1	chr9	119266092	119266292	+	671.0	f0_balb.idr	intron (NM_001359582, intron 8 of 18)	intron (NM_001359582, intron 8 of 18)	-34500.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	3.34702239828887	3.38568909046509	3.49403186940719	3.53514251513336	2.86129638207089	2.87947940290406	2.84163997555435	2.99067924785508	-2.47160769052723	0.000149363185368042	0.00284341325790636
Merged-chr6-125433892-4	chr6	125433785	125433985	+	821.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53381.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	3.28978125174303	3.6131206551867	3.85765362373078	3.51826529810856	3.48584625304823	3.77839884030463	3.7940000043337	3.98591970564255	0.567741120760864	0.262865564521977	0.574717656257213
Merged-chr1-156030011-4	chr1	156029926	156030126	+	879.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144791, intron 4 of 6)	intron (NM_144791, intron 4 of 6)	4791.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	4.30857414389939	3.64650154611138	4.22726122637422	4.09591278922726	4.25285657467522	3.95577415386285	4.32770057627939	3.88778720362231	0.0886514607600584	0.847318465659002	0.942260706909278
Merged-chr10-80797998-4	chr10	80797925	80798125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013651)	promoter-TSS (NM_013651)	601.0	NM_023900	78670.0	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	6.43659790251836	6.1646553875492	6.52037890961055	6.3145331714315	6.27265300287883	6.57891104442398	6.35272671906012	6.65190342616326	0.157518258859288	0.491624080367552	0.763129656885443
Merged-chr6-94509895-4	chr6	94509817	94510017	+	956.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026255, intron 2 of 9)	intron (NM_026255, intron 2 of 9)	9603.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	4.83321997917672	5.41443245952178	5.23619723469571	5.74939050682194	4.76065716052306	4.5574977102241	4.73066880854644	4.70728919415209	-1.31970171999048	0.000310345319925173	0.00521361093390463
Merged-chr15-4016445-4	chr15	4016370	4016570	+	950.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045740)	TTS (NR_045740)	-9958.0	NM_024188	67041.0	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	4.71571870438332	4.24055795067091	4.55425414423485	5.17132255048696	4.6451860649461	4.73011636680373	4.65592286346438	4.9232343108585	0.00714965422591199	0.985983871842007	0.994788671899563
Merged-chr11-114887566-4	chr11	114887450	114887650	+	720.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-2491.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	3.83413805933264	3.54651675678361	3.9737845861223	3.64419947481836	3.97484829346698	3.61799487558996	3.6085205080926	3.97126889744751	0.177703686058985	0.712014968389443	0.884715833326134
Merged-chr14-25747752-4	chr14	25747701	25747901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	21055.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	5.76752635247891	5.5838476753524	5.83800551640228	5.99712500076382	5.59255333748983	5.46146371228716	5.80825766385159	5.58586746026867	-0.329746169993803	0.2214754319146	0.529504224380266
Merged-chr11-103030420-4	chr11	103030314	103030514	+	920.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008707, intron 1 of 11)	intron (NM_008707, intron 1 of 11)	1871.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	4.52310166534729	4.97356258064248	4.14747982092978	4.29950369092285	4.72508654175939	4.73613557424067	4.282823720997	4.34637082620001	0.0430917598087745	0.91948172171375	0.970308092934814
Merged-chr14-55497488-4	chr14	55497372	55497572	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155104, intron 17 of 38)	intron (NR_155104, intron 17 of 38)	6402.0	NR_155104	268747.0	Mm.151577	NM_001024645	ENSMUSG00000022211	Carmil3	Lrrc16b|mFLJ00240	capping protein regulator and myosin 1 linker 3	protein-coding	4.96870469079728	4.68399593073013	4.22276265205685	4.73540009029685	4.80276597099126	4.82352937321596	4.62773283713447	4.93434165589078	0.247200298029455	0.502127652265303	0.769457185302407
Merged-chr8-71951024-4	chr8	71950940	71951140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164581)	promoter-TSS (NM_001164581)	-26.0	NM_001164581	234413.0	Mm.334607	NM_001164581	ENSMUSG00000052446	Zfp961	A230105L22Rik|BC065788|mszf37|mszf55-2	zinc finger protein 961	protein-coding	8.47060683695047	8.42555984046711	8.51512736261292	8.42518265883817	7.93652364602796	8.37816054746366	8.2266094271565	8.15183060899745	-0.358288094264556	0.0292549563017523	0.164494710056278
Merged-chr12-103339858-4	chr12	103339742	103339942	+	893.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	16159.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	4.00221970471145	3.70288664592686	4.1519734423236	4.37219831425898	4.30617615026529	4.01616422061477	4.56270861896907	4.32453836687536	0.54737476226717	0.229535640080327	0.538611736247523
Merged-chr19-6950746-3	chr19	6950666	6950866	+	844.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007522, exon 3 of 4)	exon (NM_007522, exon 3 of 4)	8204.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	3.38690909765268	3.41503753063194	3.49997951419057	3.10633508997837	3.43369908672109	3.72227607126888	3.37455575971187	3.60139399782588	0.644233387411634	0.217205644943245	0.523995275425022
Merged-chr10-69257760-4	chr10	69257651	69257851	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252637, intron 4 of 10)	intron (NM_001252637, intron 4 of 10)	44557.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	5.05813136058796	5.32450816702311	5.19672542814676	5.12934301486466	5.51664568951932	5.27142038716424	5.45957962155318	5.40313980735266	0.43952413852702	0.123326804005291	0.38943607569729
Merged-chr14-120262928-4	chr14	120262843	120263043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12726.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	6.65895024341625	7.27238701435903	7.16780136713028	6.75894269903922	7.11507586526215	6.86935205955866	6.67317580969157	6.67130631370453	-0.185772320353167	0.437960355297956	0.726149082919945
Merged-chr3-88534326-2	chr3	88534226	88534426	+	986.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029890, intron 1 of 1)	intron (NM_001029890, intron 1 of 1)	1931.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	3.37809242641067	3.25750621792042	3.48537060416782	3.2087059743971	3.28177121071726	3.31168893619989	3.52034612318882	3.37670576264936	0.165197466784794	0.751406977461363	0.902145552360104
Merged-chr7-89423336-3	chr7	89423230	89423430	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2976.0	NR_102276	101521.0	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	5.68401514442551	5.204309863411	5.40475248368487	5.63183447657005	3.82096405598209	4.3032090214292	4.02143841423118	4.16264919730256	-3.29817775540277	7.46028415833323e-15	1.18003459134667e-12
Merged-chr12-111469681-4	chr12	111469577	111469777	+	777.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16146.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	3.55005975627144	3.85326709954811	3.42895879187575	3.38766250062303	3.79585455524783	3.8846082323991	3.79607785576306	3.65980750439232	0.687563137792589	0.155324132719106	0.440979076070846
Merged-chr10-59951937-4	chr10	59951814	59952014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029083)	promoter-TSS (NM_029083)	-144.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	8.43793269886869	8.72114896156613	8.56384825099947	8.69210850477586	8.59313254862813	8.49597865015044	8.89788179292585	8.50508235023114	0.0275779378598432	0.869630046649832	0.951054729822361
Merged-chr7-79660127-4	chr7	79660030	79660230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029835)	promoter-TSS (NM_029835)	-66.0	NM_029835	77011.0	Mm.28132	NM_029835	ENSMUSG00000046591	Ticrr	5730590G19Rik|BC028450|Lrrk1	TOPBP1-interacting checkpoint and replication regulator	protein-coding	8.39580651023608	8.48126627832094	8.1739254931621	8.46563191631265	8.5039663041176	8.26058095918586	8.36848314845746	8.48260860792662	0.0270927823549974	0.866171181260518	0.949861736890724
Merged-chr7-110166383-4	chr7	110166297	110166497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44338.0	NM_009516	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	6.79622314926599	7.33641978607139	6.92331708993433	6.40678148684146	7.2950722847088	7.30789138790495	6.8477741615593	7.0804391595726	0.340160231507497	0.182292297085894	0.47878218634963
Merged-chr13-16011930-3	chr13	16011826	16012026	+	846.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008380)	promoter-TSS (NM_008380)	75.0	NM_008380	16323.0	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	4.41348839537134	4.15013237244182	4.76728705811673	4.43458447180748	4.20686648242939	4.04798817230712	4.17387047602876	4.36990715431405	-0.601707541476061	0.142295317094694	0.419796840696448
Merged-chr9-89237322-4	chr9	89237232	89237432	+	904.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359993, intron 2 of 2)	intron (NM_001359993, intron 2 of 2)	25948.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	5.05717575239799	5.26865489497211	5.09124900793686	5.03842099388241	4.91507446191375	4.89250738960771	5.12982301766103	5.24176711083641	-0.124203231771447	0.690338197866592	0.873867732277185
Merged-chr7-123394273-4	chr7	123394178	123394378	+	976.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025304, intron 1 of 10)	intron (NM_025304, intron 1 of 10)	-13539.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	5.34760720287816	5.3096210096966	5.61958876841646	5.75590463140534	5.50720991427303	5.39804301082254	5.09265400101898	5.31425310524671	-0.337506117628362	0.262697952744306	0.574492367530631
Merged-chr7-101836777-4	chr7	101836685	101836885	+	875.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001122739, exon 2 of 29)	5' UTR (NM_001122739, exon 2 of 29)	1039.0	NM_001122739	16332.0	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	3.47041370279654	3.40663354596991	3.93389642300323	3.28660778728161	3.56483136533149	3.86962822130273	3.78035843518434	3.84199573717248	0.706800614041049	0.167469770325699	0.459127634788465
Merged-chr14-21049564-4	chr14	21049475	21049675	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018829, intron 1 of 8)	intron (NM_018829, intron 1 of 8)	2867.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	5.14489242392024	5.2379430187233	4.90608751863741	4.82387712389593	5.26373273513289	5.00561408940078	5.05698466268974	5.04509312537159	0.149164412195505	0.641201349419279	0.848625403955452
Merged-chr2-170308124-4	chr2	170308014	170308214	+	781.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48247.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	4.22815525981879	4.25185472618922	3.95164918758656	3.51863125646609	4.15275974038422	4.39833039052174	3.82903467633707	3.84226497113443	0.164827189319921	0.739326508055684	0.897279092855727
Merged-chr15-80134067-4	chr15	80133970	80134170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025609, intron 1 of 10)	intron (NM_025609, intron 1 of 10)	916.0	NM_025609	66513.0	Mm.288245	NM_025609	ENSMUSG00000022414	Tab1	2310012M03Rik|Map3k7ip1|b2b449Clo	TGF-beta activated kinase 1/MAP3K7 binding protein 1	protein-coding	5.55453001132533	5.69976135265113	5.38347550808494	5.68849714228698	5.52600372106264	5.58900608261325	5.47316330358901	5.57816658638633	-0.0999595526914613	0.709434601188938	0.883531787804477
Merged-chr12-69360839-4	chr12	69360755	69360955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3679.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	5.64244875937679	5.98231784184733	5.74634301747862	5.65518155558398	5.6657440042806	5.84544446706784	5.78879992712395	5.81424609196614	0.0246112456829622	0.923817468791621	0.971863340184091
Merged-chr2-25074509-3	chr2	25074417	25074617	+	887.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5806.0	NM_028093	72090.0	Mm.33403	NM_028093	ENSMUSG00000036813	Entpd8	-	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding	3.83900193118936	4.23713107311494	3.94412796617383	4.07714985750635	4.20269432304117	3.84472383826262	3.8772961104575	4.03846008216807	-0.0804787296812522	0.854961852265218	0.945413625850735
Merged-chr18-9619855-4	chr18	9619752	9619952	+	801.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007593)	promoter-TSS (NM_007593)	-383.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	4.06000129874801	3.66718645889526	3.96281887649191	4.00221976665963	3.97220174619243	4.18504989100678	4.25649809768185	4.19189920273198	0.569509565070031	0.183688593439567	0.480761104819123
Merged-chr15-39783591-2	chr15	39783491	39783691	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164466, intron 9 of 9)	intron (NM_001164466, intron 9 of 9)	-13454.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	3.39744047531392	3.39448564034082	3.34553333095904	3.28907223064941	2.91268877788297	3.15593266344526	3.27798312946455	3.1100808807747	-0.939922422587744	0.096664329992876	0.340574096588254
Merged-chr1-16798504-4	chr1	16798417	16798617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110061.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	6.37260796416134	6.77782570046951	6.60622603095295	7.54219465882512	6.86658889316614	6.45199984898929	7.06405876203336	6.534428202323	-0.234625171950865	0.440727400282161	0.728108056740952
Merged-chr2-148443621-1	chr2	148443521	148443721	+	1000.0	f0_balb.idr	promoter-TSS (NM_010740)	promoter-TSS (NM_010740)	-86.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	3.48552449148209	3.35959015804303	4.06305013833851	3.84261970206148	3.41049447913371	3.13295040207834	3.16096948809574	3.53903076485749	-1.31892580303347	0.0248957049709511	0.148061910648651
Merged-chr8-80943977-4	chr8	80943874	80944074	+	980.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4A|LINE|L1	-63455.0	NM_001301298	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	5.3262990492293	4.74621003704359	5.32724316241042	4.94015429438091	4.30725852753129	5.00330739333655	5.0133776514256	4.61683011735113	-0.684317545525096	0.0771876174925748	0.300390236495571
Merged-chr13-110711074-4	chr13	110710974	110711174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-192425.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	6.0064517045888	5.87230021593699	5.58928950710515	6.08105087048878	6.07277786118017	5.9544083470488	5.91275925234731	5.77434497307702	0.0386533946089573	0.881460858564788	0.955384724180766
Merged-chr7-120918715-4	chr7	120918635	120918835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164096, intron 1 of 19)	intron (NM_001164096, intron 1 of 19)	991.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	6.63990793876689	6.63259435848742	6.73888761532577	6.71570064360102	6.3971955443899	6.06880818087973	6.02918826096981	6.03258716909246	-0.781138971064072	0.000593694842233816	0.00886352675120385
Merged-chr3-152193841-4	chr3	152193761	152193961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025926)	promoter-TSS (NM_025926)	-16.0	NM_025926	67035.0	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	7.45325628745181	7.73397902768482	7.47397642302058	7.65699704775209	7.63779053632371	7.71707654519062	7.87813347499747	7.3684797755571	0.0952559409270467	0.61537170130031	0.834461661846382
Merged-chr6-86396753-3	chr6	86396653	86396853	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025823, intron 1 of 5)	intron (NM_025823, intron 1 of 5)	397.0	NM_001355687	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	5.0578371890605	5.42522707386059	5.41783120314813	5.16040166777159	5.13063695028805	4.74483913564059	5.31042201290712	4.94715842698086	-0.401311845307618	0.216866067528796	0.523576380620064
Merged-chr2-83625411-4	chr2	83625312	83625512	+	691.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19166.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	3.53222810489049	3.81659462124005	3.59143832069275	3.78118417808665	3.73042229254289	3.81999603954532	4.00734043955303	3.53090321546507	0.261982488864063	0.58458765463011	0.81770127279888
Merged-chr1-43535877-4	chr1	43535791	43535991	+	968.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 3 of 4)	L3|LINE|CR1	90140.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	5.8631376993899	5.15312141511298	6.02521011702468	5.85468928148435	5.59396538251771	5.15073986167031	5.52006003190833	5.69979012902308	-0.424375576174116	0.186571765799162	0.484582803058514
Merged-chr8-121104239-4	chr8	121104135	121104335	+	904.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172761, intron 4 of 7)	intron (NM_172761, intron 4 of 7)	4144.0	NM_172761	234814.0	Mm.31690	NM_172761	ENSMUSG00000031816	Mthfsd	AW049977|BC052066|C920004D05	methenyltetrahydrofolate synthetase domain containing	protein-coding	3.95630456438547	4.37574150035089	3.95683583668626	4.12180167966383	4.8009630884042	4.34319733267448	4.1972173414138	4.50548582098479	0.889269489888951	0.0343219415659077	0.183083603349519
Merged-chr16-31947448-4	chr16	31947356	31947556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027897, exon 1 of 1)	non-coding (NR_027897, exon 1 of 1)	1065.0	NR_027897	106264.0	Mm.347369	NM_025320	ENSMUSG00000107002	0610012G03Rik	AI839730	RIKEN cDNA 0610012G03 gene	ncRNA	6.60037278792312	6.4648139203664	6.63158918384009	6.44587343882481	6.17773928925673	6.19077003010901	6.47350611214854	6.75370071849746	-0.170830213864362	0.470659409674302	0.749313697940171
Merged-chr5-65764308-8	chr5	65764184	65764384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024917, intron 1 of 19)	CpG	763.0	NM_001024917	333789.0	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	4.21887310890384	5.16559707779325	4.95923279733969	4.7815239922273	4.70220943451596	4.99285804010958	5.02982796331943	4.73969473084487	0.0869666544508911	0.822649784767422	0.932143478460956
Merged-chr7-96413726-3	chr7	96413610	96413810	+	968.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 2 of 32)	intron (NM_011858, intron 2 of 32)	-71746.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	4.37362731027295	4.03783292146044	4.29740081452098	4.42533744771058	3.79465532927263	4.00028895491616	3.74923976558911	3.87574209475553	-1.20164040649866	0.0059231395069266	0.0537690533048754
Merged-chr7-72166455-3	chr7	72166307	72166507	+	944.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024703, intron 14 of 22)	intron (NM_001024703, intron 14 of 22)	140188.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	4.56503607844962	4.25717066581217	4.5962727370357	3.96185523010042	3.36136624401131	3.57279807338389	3.43856454495308	3.58553009151771	-2.71963312414311	7.21912320213137e-07	2.59556408935721e-05
Merged-chr6-140678814-4	chr6	140678696	140678896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009637)	TTS (NM_009637)	51911.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	5.0042138506919	5.4457484351088	5.38005026730266	5.39193180414212	5.71370896958832	5.33224293845776	5.73054517063426	5.37630706112871	0.409866039464912	0.167024794698166	0.458497946900768
Merged-chr5-67778233-4	chr5	67778146	67778346	+	734.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284345, intron 7 of 36)	intron (NM_001284345, intron 7 of 36)	69185.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	3.25251148408977	3.41903704221053	3.49633350243341	3.38286722484614	3.80592178687854	3.49462469017589	3.81783698156275	3.4377381129071	0.865514565294294	0.0852028844755087	0.317787471917954
Merged-chr1-157549880-4	chr1	157549770	157549970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159986, intron 12 of 25)	intron (NM_001159986, intron 12 of 25)	23700.0	NM_001159986	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	6.05043972688268	5.93624004251192	5.81436344235359	6.75739986425804	6.13144009383356	5.91355398321611	6.34147098764444	6.13082847002305	-0.125174298740744	0.68062526831184	0.868928920613391
Merged-chr8-4613708-3	chr8	4613619	4613819	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145591, intron 1 of 3)	intron (NM_145591, intron 1 of 3)	549.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	4.59838349734265	4.36267613025815	4.36183904122101	4.24446735421477	4.16078140463954	4.35161530876664	4.38454072521523	4.52192069796108	-0.0785465549410112	0.839335364587192	0.938895262970456
Merged-chr8-68951994-4	chr8	68951894	68952094	+	912.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	71439.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	4.48645484935763	4.34953781885844	4.90940032699082	5.18788198879935	4.94991846478855	4.80909009948743	5.38152516009183	5.33066356439188	0.666003619314942	0.0983202202122309	0.343797158306464
Merged-chr4-150008581-4	chr4	150008447	150008647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173371, intron 1 of 4)	intron (NM_173371, intron 1 of 4)	476.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	6.43739695745867	6.60056461605309	6.32862161994208	6.16073597255086	6.45366566983627	6.90926324046908	6.72712782914525	6.51867413435993	0.40235270596812	0.0854214475800828	0.318212210778414
Merged-chr17-80560962-4	chr17	80560865	80561065	+	971.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360144, intron 1 of 9)	intron (NM_001360144, intron 1 of 9)	2869.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	5.25124669959955	4.71206253423714	4.64337454850488	5.11698232014606	5.23906050713473	5.24156834602105	4.94193258024078	5.12928822609319	0.344362394003371	0.310534306181782	0.622616866559057
Merged-chr1-58728477-7	chr1	58728357	58728557	+	937.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 2 of 8)	intron (NM_001355056, intron 2 of 8)	-2095.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	4.43391421258578	4.63988081883634	4.19925424267468	3.48675644096331	4.81582842116446	4.76943154162777	4.37051095333646	4.66716207786309	0.917561055903816	0.0550420983504657	0.245202247996482
Merged-chr10-117221080-4	chr10	117220981	117221181	+	791.237488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026570, intron 2 of 6)	intron (NM_026570, intron 2 of 6)	3426.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	4.44305991452346	4.75844205281552	4.17214167130081	4.31851586125692	4.28052852502431	4.57398008788778	4.0511830432199	4.35667695692855	-0.269728693909458	0.512510044252868	0.775855557112548
Merged-chr5-140749229-3	chr5	140749123	140749323	+	961.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_173405, exon 7 of 8)	exon (NM_173405, exon 7 of 8)	25096.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	4.2318387802752	4.22330931920547	4.05695839236774	4.14410024248165	3.67757412778388	4.1812661603434	3.94274498928114	3.79534817072156	-0.714852405759062	0.104365112551363	0.35521721623021
Merged-chr15-59076476-4	chr15	59076369	59076569	+	809.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 1 of 14)	intron (NM_144800, intron 1 of 14)	5557.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	4.54094478808174	4.42647794983224	5.04084968562026	5.18909820445665	4.23325759056924	4.7607218983862	4.3359511386508	4.9458332911683	-0.529150617995152	0.21695465621041	0.523709277797021
Merged-chr1-135691136-4	chr1	135691024	135691224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28939.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	5.29556416803546	5.32634671321564	5.26837352500446	5.02167322188775	4.83340879220882	4.92784862564885	4.84774367824793	5.01408269733756	-0.615210464102663	0.0514134079672095	0.235504335817451
Merged-chr6-116004199-3	chr6	116004095	116004295	+	887.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9190.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	3.25947470928007	3.42714840755675	3.25983438903752	3.49477115999729	3.5746566241572	3.8325982739486	3.43528781244259	3.92848189321132	1.05167830765988	0.0443945704030005	0.214846418732334
Merged-chr18-30583634-4	chr18	30583532	30583732	+	990.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	310767.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	4.18852011354706	4.68237925539841	4.57485860315287	4.66870832013002	4.70178898528951	4.78951777676538	4.81484601865363	4.90113766758946	0.518028676654146	0.150365278753014	0.433002771293654
Merged-chr11-116586980-4	chr11	116586874	116587074	+	888.1124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5527.0	NM_173755	217342.0	Mm.243950	NM_173755	ENSMUSG00000020802	Ube2o	9630022H21|B230113M03Rik|E2-230K|mKIAA1734	ubiquitin-conjugating enzyme E2O	protein-coding	4.52183950039827	5.18201834042761	4.11569725525111	4.21570851481496	5.0592369203511	4.8989322779567	4.45763117470447	4.7590420187531	0.485494531518236	0.278666670503062	0.590914140070231
Merged-chr2-25498077-4	chr2	25497982	25498182	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027062)	TTS (NM_027062)	2424.0	NM_027062	69379.0	Mm.24596	NM_027062	ENSMUSG00000015083	C8g	-	complement component 8, gamma polypeptide	protein-coding	5.11979808689222	4.88759425647495	4.7506101919537	4.99099706540225	5.0163234058138	5.44322807882865	5.42921959175063	4.94550892863094	0.520787860364182	0.112697844163427	0.371232476056666
Merged-chr4-139178591-3	chr4	139178485	139178685	+	713.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033543, exon 2 of 3)	non-coding (NR_033543, exon 2 of 3)	2070.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	3.15384787445152	2.86799083038312	2.79431857885144	2.91515771295836	3.41921810340246	3.33254872747731	3.42331340439571	3.79008726878752	2.12599728377936	0.000298723813695053	0.00505537526777831
Merged-chr16-11053996-4	chr16	11053905	11054105	+	892.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12293.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	3.95803018410658	3.80580298744823	4.55793519344833	4.20279638738075	3.80171933321638	3.79585318858969	4.17228525812342	3.95628680385207	-0.591456156116118	0.209019556473247	0.513413860974639
Merged-chr8-108704618-7	chr8	108704541	108704741	+	938.8095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10003.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	3.98570661900921	4.18409666874477	4.33959276235895	3.71939962366358	4.13753859895704	3.94619535069621	4.0189227774053	4.25730865150591	0.086666521482648	0.846684353462003	0.941967608044389
Merged-chr9-64914792-4	chr9	64914683	64914883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162917, intron 34 of 34)	intron (NM_001162917, intron 34 of 34)	36824.0	NM_144813	214111.0	Mm.156124	NM_144813	ENSMUSG00000034452	Slc24a1	-	solute carrier family 24 (sodium/potassium/calcium exchanger), member 1	protein-coding	5.91557733880687	5.90678885977054	5.75684196345227	5.37204623856309	6.06369126526667	5.40305815856748	5.51765380755464	5.93361836218104	0.0451812321320795	0.883006821693579	0.955912021732991
Merged-chr1-91053003-4	chr1	91052914	91053114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310732)	promoter-TSS (NM_001310732)	-430.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	8.11840864038507	8.32325087525132	8.42937608521339	8.00322716132162	7.97486610448789	7.94455957244363	8.39983410511595	7.76973832708153	-0.231612027935696	0.245894707193146	0.557086363336334
Merged-chr12-72362091-7	chr12	72361989	72362189	+	993.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	46965.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	4.3242781454093	4.61669101769788	4.72235438562662	4.73103884457979	4.67001329457273	4.8569742915325	4.80831693731278	4.9914785106749	0.44321365840528	0.207882039544935	0.512001235043907
Merged-chr12-111376266-4	chr12	111376170	111376370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183016, intron 1 of 36)	intron (NM_183016, intron 1 of 36)	1448.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	5.20699756168148	5.36517348809033	5.24055305554214	5.60578369936796	5.23097185906191	5.44726619045585	5.55176107388277	5.44574844635653	0.0558020118482993	0.850619659410044	0.943633424218446
Merged-chr2-164071209-4	chr2	164071085	164071285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291155)	promoter-TSS (NM_001291155)	-16.0	NM_001291155	67145.0	Mm.23173	NM_025996	ENSMUSG00000018322	Tomm34	2610100K07Rik|TOM34	translocase of outer mitochondrial membrane 34	protein-coding	8.15381904177091	8.16998180429248	7.97797750132281	7.83643148472312	8.1747709494174	8.31431952086082	8.37467742524666	8.11879489710016	0.272614711564997	0.1088220323389	0.36413329446458
Merged-chr4-150594518-4	chr4	150594412	150594612	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	URR1B|DNA|hAT-Charlie	57662.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	5.58375043187889	5.51632005293892	4.99304386140549	5.43160429942684	5.60482579231433	5.45150693891669	5.2181914236761	5.36424815114367	0.0363605359735492	0.904288976179879	0.964559678221358
Merged-chr11-62820373-3	chr11	62820269	62820469	+	911.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_053169, exon 1 of 6)	5' UTR (NM_053169, exon 1 of 6)	116.0	NM_053169	94092.0	Mm.117087	NM_053169	ENSMUSG00000047821	Trim16	9130006M08Rik|AI482483|EBBP	tripartite motif-containing 16	protein-coding	3.88257922825211	3.84758344580149	3.88316109031266	3.88029365513967	3.55709360432101	3.79812910624772	3.76999476909048	3.56336760825347	-0.612113553287452	0.182324092857014	0.47878218634963
Merged-chr14-55604115-4	chr14	55604009	55604209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159418)	promoter-TSS (NM_001159418)	124.0	NM_001159417	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	7.20215836626131	7.03872235051666	6.69133876611915	6.75988949957027	6.86427148364202	7.14976709687351	6.88669162066094	6.9933807258669	0.0578965819486131	0.786948037284431	0.917257197669312
Merged-chr16-84990089-4	chr16	84990002	84990202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 12 of 15)	intron (NM_001198825, intron 12 of 15)	17891.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	6.55214403088202	6.53068871631009	6.86700858822112	7.17948208546641	6.29738426619928	6.01507694081252	6.59786865394211	6.42984020489892	-0.683119352499649	0.00833873723456811	0.0691211107044746
Merged-chr4-63357220-4	chr4	63357136	63357336	+	922.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013623, intron 3 of 5)	intron (NM_013623, intron 3 of 5)	1074.0	NM_013623	18407.0	Mm.381399	NM_013623	ENSMUSG00000028359	Orm3	Agp-3|Orm-3	orosomucoid 3	protein-coding	4.75381439647211	5.06478784943015	4.44483670731621	4.11322485653017	4.66188006030829	4.48499487450798	4.33490675580284	4.25425347272667	-0.419193801790809	0.336945244570527	0.646802199657107
Merged-chr6-115620056-1	chr6	115619956	115620156	+	574.0	f1_c57bl6.idr	intron (NM_029780, intron 14 of 16)	intron (NM_029780, intron 14 of 16)	18118.0	NM_023290	67027.0	Mm.101316	NM_023290	ENSMUSG00000000439	Mkrn2	2610002L04Rik|C81377	makorin, ring finger protein, 2	protein-coding	2.8687640097982	2.54422100515093	2.67957951055586	2.8227493273151	2.65365444663214	2.97772324740057	2.79881929360759	2.80755559730512	0.334232653278079	0.605918232123974	0.829218406549364
Merged-chr8-111090298-4	chr8	111090227	111090427	+	857.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4418.0	NM_198308	319518.0	Mm.28350	NM_198308	ENSMUSG00000033624	Pdpr	4930402E16Rik|AU018056|mKIAA1990	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding	3.86514523169555	3.7571848803812	3.70969338986472	3.56876940799827	4.12684214816531	3.71215689072491	3.74864215839531	4.0452903569709	0.606954942150703	0.187449563672543	0.485852177286722
Merged-chr2-30270347-4	chr2	30270251	30270451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252571, intron 2 of 9)	intron (NM_001252571, intron 2 of 9)	3532.0	NM_001252570	227696.0	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	7.41529638288938	7.60841842478113	7.43554497447805	7.4349196440615	7.02982123226361	7.35204166279142	7.20623263723077	7.07333000822218	-0.419711801276284	0.0228188803328478	0.139550226240379
Merged-chr15-97767935-4	chr15	97767816	97768016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144850)	promoter-TSS (NM_144850)	-250.0	NM_001357630	223864.0	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	5.86865030285917	5.78158428335349	6.10715182696503	5.71819067261378	5.44480969592936	5.51394868019721	5.43387275591244	5.51607603222116	-0.655991256842607	0.0144086222676488	0.101957582700962
Merged-chr10-19978995-4	chr10	19978905	19979105	+	857.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	RLTR11B|LTR|ERVK	44479.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	4.40974249246256	3.80271216573571	4.55651007714104	3.98769295750102	4.10540229397496	4.41728291152182	3.98676181064996	4.19759577611221	-0.0765874901763998	0.866612822953074	0.950019210311976
Merged-chr3-107036105-4	chr3	107036024	107036224	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008418)	promoter-TSS (NM_008418)	-38.0	NM_008418	16491.0	Mm.30640	NM_008418	ENSMUSG00000047959	Kcna3	Kca1-3|Kv1.3|Mk-3	potassium voltage-gated channel, shaker-related subfamily, member 3	protein-coding	4.67127976144705	4.10286337112035	4.56544426615199	4.45613121888936	4.26209293409199	4.35457025704824	4.38740699343879	4.224657039093	-0.364955794021146	0.354963626522325	0.661579026385505
Merged-chr17-72962164-3	chr17	72962058	72962258	+	839.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43853.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	4.14773774447152	3.93653797703359	4.1483836629298	4.30487020669104	3.71116962255458	3.91924684720532	3.78368092057729	4.30953640595988	-0.536348638270421	0.240620966167779	0.551185699479073
Merged-chr19-12518027-4	chr19	12517928	12518128	+	864.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16032.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	3.96846915284504	3.9051405819777	4.1976422246495	4.07702013473359	4.20445912382265	3.87087584428154	3.90246850272332	4.23575879738065	0.0768096694246796	0.858119161008433	0.946507493877689
Merged-chr15-78913836-4	chr15	78913720	78913920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020271)	promoter-TSS (NM_020271)	-99.0	NM_020271	57028.0	Mm.263169	NM_020271	ENSMUSG00000116165	Pdxp	1600027H05Rik|AB041662|PLPP	pyridoxal (pyridoxine, vitamin B6) phosphatase	protein-coding	6.93607745774356	7.07634985013052	6.75940616805998	6.74790292884285	7.10137250126944	6.81312145104074	6.87652137850548	6.64794250858472	-0.00383951987598298	0.985674999226055	0.994721627180638
Merged-chr13-75943596-5	chr13	75943447	75943647	+	863.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028493, exon 1 of 12)	5' UTR (NM_028493, exon 1 of 12)	277.0	NM_028493	73296.0	Mm.276200	NM_028493	ENSMUSG00000021589	Rhobtb3	1700040C17Rik|2610033K01Rik|4930503C18Rik|AI317148|AW208826|mKIAA0878	Rho-related BTB domain containing 3	protein-coding	3.33158241276183	3.74638133211114	3.45857745973658	3.59579821691759	3.58128062230438	3.63378417632328	3.76198137061459	3.86695532440041	0.508834366891735	0.301045390693077	0.612994478573963
Merged-chr5-137785747-2	chr5	137785647	137785847	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_144913, exon 1 of 4)	exon (NM_144913, exon 1 of 4)	954.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	4.26514008490097	4.64555215566628	4.12691459972154	3.95807791450951	4.26390372624655	4.20284533769653	3.84252905711094	4.42729513516451	-0.165644325907906	0.71356175351675	0.885457948749053
Merged-chr1-160251634-3	chr1	160251547	160251747	+	782.844421	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038621, intron 3 of 8)	intron (NM_001038621, intron 3 of 8)	-38755.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	4.08285204410043	3.52410748155433	4.04329003038661	4.42000515468522	3.1810446817699	3.33178642241583	3.20461738194818	3.6068726018784	-2.40694620383214	5.34721531548253e-05	0.0011999036536593
Merged-chr17-50735598-4	chr17	50735505	50735705	+	888.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001285991, exon 23 of 23)	3' UTR (NM_001285991, exon 23 of 23)	36924.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	3.68098178729123	4.07657391502068	3.60863572557836	3.72111142211213	5.06661540907635	4.57087932089664	4.88681158853119	4.62421046520872	2.45388441968555	1.55700144202936e-08	7.95590851702857e-07
Merged-chr4-137358408-3	chr4	137358325	137358525	+	858.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243769)	promoter-TSS (NM_001243769)	-666.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	3.88438546555194	3.64173807245363	3.79037591605311	3.64019094599871	3.57664224992209	3.75203681226538	3.44436058524331	3.92725061041476	-0.158885177532835	0.742137764069985	0.898417179766546
Merged-chr6-137733058-2	chr6	137732958	137733158	+	643.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2024.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	3.16402473819801	3.16315938625034	3.22372943972437	3.08744739824433	3.46529060652274	3.07682582401329	3.21174519988716	3.38481210291407	0.54425824272447	0.317702025698974	0.629592752581639
Merged-chr9-113930906-4	chr9	113930796	113930996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083319)	promoter-TSS (NM_001083319)	-38.0	NM_001083319	22221.0	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	9.15960551928763	9.40656157862755	9.31876687430896	9.02966125919386	9.32696184865183	9.54193038876848	9.480232699145	9.13254490138856	0.17849349050425	0.27942610369646	0.591495502480744
Merged-chr9-77725732-3	chr9	77725631	77725831	+	935.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-28804.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	4.21994275653767	4.21965003044165	4.57366053629818	3.97219526654579	3.68196565137421	4.00641424078312	3.81626371202768	4.13059802164266	-0.940462676383696	0.042840429958387	0.21047342379956
Merged-chr11-106677898-5	chr11	106677795	106677995	+	808.4400019999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	37386.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	2.94226727749171	2.99600899862157	3.31386795909239	3.00765031827033	2.6985191177021	2.85024522106208	2.80461850851795	2.87817760930753	-1.20549522140881	0.0571019187152439	0.250428679743213
Merged-chr13-74617659-7	chr13	74617556	74617756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22197.0	NM_030711	80898.0	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	A-LAP|ARTS-1|Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	4.57516253978287	4.77850270760595	4.78923135745965	4.79748372056473	4.81971984098352	4.75734228949417	5.22097860410971	5.55702949855355	0.754458701426482	0.0372446447763203	0.192526687099308
Merged-chr2-33431521-4	chr2	33431408	33431608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276332)	promoter-TSS (NM_001276332)	-184.0	NM_001276332	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	5.56287947550864	5.92973350646939	6.22696767670083	5.54651600475625	5.56809605990196	5.87266825993449	5.56349521667077	5.41099364199531	-0.374267245058153	0.213432205300962	0.518848734327771
Merged-chr5-28038440-3	chr5	28038317	28038517	+	867.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32995.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	3.44237996682757	3.71523492771925	3.44282964547463	3.22789551747038	3.42353047962298	3.77815749313264	3.37060169815481	3.75207515259462	0.416576767187583	0.427744817620935	0.71887209364609
Merged-chr15-98510667-4	chr15	98510555	98510755	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9179.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	5.27367823274562	5.143275938331	4.95798096864257	5.27700601469205	5.67487608517135	5.79735061461581	5.11823637541859	5.36114224291763	0.60595735062138	0.0533180681973971	0.240914541752208
Merged-chr9-96438047-6	chr9	96437928	96438128	+	951.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40647.0	NM_011279	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	4.92943004341859	5.00169763349936	5.35136457219317	5.0641890476069	4.82643652800622	4.54362712541892	4.97547525987147	5.02971238703612	-0.463687721722616	0.167936038537228	0.459915036621355
Merged-chr18-4315298-4	chr18	4315224	4315424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37629.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	5.89630370608388	6.07540669866095	5.45765988039511	5.32741698764746	6.16588429563571	5.93404158614005	5.62869428848496	5.42266108566414	0.178303237266458	0.584028951019064	0.817501676178582
Merged-chr11-68897299-2	chr11	68897210	68897410	+	619.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4256.0	NM_009080	19941.0	Mm.3229	NM_009080	ENSMUSG00000060938	Rpl26	SIG-20	ribosomal protein L26	protein-coding	2.98214471115311	3.06387937467608	2.91060973699982	2.65050943850076	3.62078852176177	3.16531194660428	3.2242791450576	3.67329435814275	2.15777036454449	0.00036513389797919	0.00595415022319834
Merged-chr11-101170505-3	chr11	101170404	101170604	+	889.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146030, intron 1 of 12)	CpG	798.0	NM_146030	217198.0	Mm.273254	NM_146030	ENSMUSG00000035172	Plekhh3	BC020025	pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	protein-coding	3.15607870059117	3.39646781310155	3.15644195078174	3.17231809199448	3.24197819149637	3.26779231713661	3.42785974779619	3.53865612830054	0.537755790178529	0.312855021066214	0.624760990137467
Merged-chr13-37642568-4	chr13	37642497	37642697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-183441.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	7.10270939546771	7.21251185098037	7.430736252253	7.42622668833479	6.63408160944738	6.90370076401806	6.89373488640511	6.91044703612077	-0.654430279348527	0.00106172945271548	0.0141257646195953
Merged-chr19-46600577-4	chr19	46600485	46600685	+	763.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146099, intron 1 of 3)	L1MB5|LINE|L1	1479.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	3.50891259918743	3.58869620098408	3.8744430506636	3.66917482804765	3.78572773054155	3.79673660308375	3.49684102626545	3.82592632492559	0.205645351767974	0.665486126756318	0.861482624541591
Merged-chr13-100678047-2	chr13	100677947	100678147	+	974.083374	f1_balb.idr|f1_c57bl6.idr	exon (NM_183115, exon 2 of 12)	exon (NM_183115, exon 2 of 12)	8566.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	3.21037327190225	2.93039729908595	3.01881089590446	3.07782218931049	3.07690826137784	3.26346461046078	3.36386156410576	3.697708431508	1.12411516159037	0.051262656906465	0.235028963345911
Merged-chr9-38728400-4	chr9	38728311	38728511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145957, intron 9 of 18)	intron (NM_001145957, intron 9 of 18)	10143.0	NM_172767	67776.0	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	7.50068582484803	7.21184657498222	7.88174608643546	8.10263254474067	7.33027969429915	7.48634881401567	7.74232406595473	7.64775412974723	-0.223405929048476	0.343782406694753	0.652384432892204
Merged-chr5-72223110-4	chr5	72223004	72223204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	19761.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	5.24685345669102	5.30965421056404	5.82264024699275	5.45035509664397	5.20224389573487	5.5780296657166	5.46128461081332	5.71047907756658	0.0311589702064335	0.918730551767456	0.970112625083531
Merged-chr7-5083430-4	chr7	5083297	5083497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010147, intron 2 of 11)	intron (NM_010147, intron 2 of 11)	3162.0	NM_001252454	13854.0	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	5.14003750795929	5.29869810607105	5.53321737348701	5.61218550499678	5.064033856558	5.31873754207579	5.65095635349884	5.52930745316478	-0.0349081123553993	0.911402806724234	0.96695373445261
Merged-chr15-73351215-3	chr15	73351136	73351336	+	765.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358046, intron 2 of 34)	intron (NM_001358046, intron 2 of 34)	71955.0	NM_007982	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	3.4272289850175	3.30432558384771	3.89072995032519	3.50739349838193	3.260574741677	3.29506016018321	3.35791069625021	3.30914461376849	-0.84726622335864	0.11800243486449	0.380024220035269
Merged-chr11-53308260-2	chr11	53308160	53308360	+	762.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7781.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	2.86034678014338	2.81839266309561	2.6622272747633	2.90507260385997	2.62390966619805	3.02954698938203	2.9095312757556	2.85926533024524	0.176464346855822	0.781830603316657	0.915127881120275
Merged-chr12-108636712-4	chr12	108636583	108636783	+	801.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	MIRb|SINE|MIR	930.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	4.20824954861251	3.98959737651644	3.82564054283123	3.73624921917624	3.64992562525523	4.10746914285171	4.34307857836316	4.07562863544375	0.315474822734308	0.501803610917917	0.769427527857117
Merged-chr6-115227694-3	chr6	115227576	115227776	+	764.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111015, intron 1 of 12)	intron (NM_001111015, intron 1 of 12)	-11318.0	NM_001326560	20965.0	Mm.441431	NM_013681	ENSMUSG00000009394	Syn2	2900074L19Rik|AI836018|AI841723	synapsin II	protein-coding	3.59914571765992	3.51172248953935	3.3005655836109	3.31641836196865	3.76258790286394	3.54418301221318	3.86787370954991	3.74862519985016	0.983471623229021	0.0429007569234166	0.210682556716701
Merged-chr10-24150313-4	chr10	24150252	24150452	+	855.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 1 of 9)	intron (NM_016797, intron 1 of 9)	1035.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	3.85124277271333	4.05628450164477	3.95055364941319	3.40335053427039	3.89742933115803	4.02491012954225	3.97936084415269	3.79729218712136	0.281680914529351	0.559204995058442	0.803643367386073
Merged-chr12-69159722-4	chr12	69159634	69159834	+	982.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009093)	promoter-TSS (NM_009093)	-548.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	5.47214693123233	5.31993496859939	5.38524870340093	5.315088370032	5.70342696548478	5.78070170686388	5.12854211728779	5.89643495137762	0.49822753885949	0.0941390532777083	0.335640336267982
Merged-chr9-64771389-4	chr9	64771263	64771463	+	990.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33607.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	6.21664916390375	5.67108326800495	6.68222229388464	6.68184935808605	5.57736551826968	5.37440757791932	5.53969358769157	5.78532238885369	-1.27368018753196	5.41949468862512e-05	0.00121382697432866
Merged-chr11-8847853-4	chr11	8847725	8847925	+	981.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163366.0	NM_001303610	15574.0	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	HUS1 checkpoint clamp component	protein-coding	5.33726580559256	5.03467673057638	5.72066337289332	5.85291420872697	4.8815274406783	5.1013266000927	5.2195391480705	5.50152676561873	-0.620956835050053	0.0743602374713783	0.293902345659128
Merged-chr5-32013571-3	chr5	32013466	32013666	+	915.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 10 of 11)	intron (NM_144541, intron 10 of 11)	-122906.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	3.48303953809575	4.06524930921763	3.77777689253059	3.81185124572684	3.82595911875072	3.89746078895154	3.86281209660059	3.97078728567679	0.23690135184578	0.609476106981173	0.831031894356171
Merged-chr18-54918099-4	chr18	54917995	54918195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	72085.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	7.02731800397534	6.65200447426064	6.58594656568787	7.00667039508206	7.00317605440758	6.87793205558086	7.30892089824709	6.94926721082419	0.283969353260534	0.198073666074292	0.499574885075483
Merged-chr11-31736275-4	chr11	31736176	31736376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-64414.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	8.1178282871754	8.38415451063354	8.1869081773232	8.27791618656198	8.17653791751694	8.14200342982275	8.04215673598487	8.06210348318076	-0.179218607158744	0.255104570610113	0.566661098222982
Merged-chr4-149047485-2	chr4	149047385	149047585	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019781, intron 2 of 8)	intron (NM_019781, intron 2 of 8)	52327.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	3.05326941835024	2.63228783094513	2.84417402670126	2.57612181210293	2.5721852847289	2.4726247837377	2.44187949711697	2.72337316673285	-1.15975467401321	0.108692004916213	0.363971971110798
Merged-chr1-34479280-6	chr1	34479130	34479330	+	855.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19182.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	3.39527577065037	3.58104012080909	3.77366674976607	3.74676586868578	3.36227708016538	3.62993779457728	3.501737993461	3.94256606270138	-0.0439114228059676	0.932481413334074	0.975664181402534
Merged-chr9-21723539-4	chr9	21723398	21723598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010700)	promoter-TSS (NM_010700)	-78.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	7.72136150493914	7.58852322704972	7.09630848011856	7.26733076387983	7.44660075992418	7.35845985219733	7.28787178089921	7.31925577582284	-0.107949289790791	0.599381635399156	0.826316125212269
Merged-chr19-14668651-4	chr19	14668536	14668736	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70453.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	4.85614044231493	4.57047665301879	5.65168899724987	5.01049082811065	5.0961074929648	5.10641703368118	4.7150185613657	4.73399614003036	-0.294026761045989	0.457069313724658	0.740328517046477
Merged-chr5-112277733-2	chr5	112277675	112277875	+	940.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	(TG)n|Simple_repeat|Simple_repeat	1084.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	2.90912805563991	2.69887682421669	2.73800625038539	2.58434756389368	2.76051448812481	2.49114575743838	2.60141881660976	2.67401812758999	-0.453534536572017	0.501726328058186	0.769348331159891
Merged-chr13-51710934-4	chr13	51710824	51711024	+	968.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013660, intron 11 of 15)	intron (NM_013660, intron 11 of 15)	59216.0	NM_029279	75420.0	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	5.26630163407909	5.35301687405214	5.20358391716465	5.4738905659276	5.6235942256266	5.37851590871322	5.11178524181412	5.06263257160346	-0.0193865019550142	0.950217197192746	0.982218805887075
Merged-chr8-105324567-2	chr8	105324467	105324667	+	712.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177449, intron 1 of 4)	intron (NM_177449, intron 1 of 4)	1709.0	NM_177449	234684.0	Mm.381717	NM_177449	ENSMUSG00000041679	Lrrc29	A630024J02Rik|FBL9|FBXL9	leucine rich repeat containing 29	protein-coding	2.75586532651902	2.87735853748432	2.6183960829829	2.55326602069111	2.66163448004749	2.92915682120159	2.86982758916309	2.99306818477285	0.763766790540767	0.233673622800795	0.543405144503642
Merged-chr9-21510193-4	chr9	21510158	21510358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324510)	promoter-TSS (NM_001324510)	-24.0	NR_136911	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	7.27723399664846	7.47835099669666	6.9691671701751	7.01511308563882	7.21604255476093	7.44478728270698	7.48914384009113	7.14010179534614	0.176182404828836	0.400302977165599	0.698147846003575
Merged-chr11-82952098-4	chr11	82952046	82952246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183201)	promoter-TSS (NM_183201)	44.0	NM_183201	327978.0	Mm.42147	NM_183201	ENSMUSG00000054404	Slfn5	AI956840	schlafen 5	protein-coding	5.926476211543	6.49793253803075	5.85695395166768	5.91431666613901	6.16995016515697	5.95960200291367	5.98508237974831	5.55489897895843	-0.208505251073901	0.46975727337635	0.748623217976184
Merged-chr10-19554029-4	chr10	19553937	19554137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37912.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	5.1742076214715	5.0836972113509	5.26949001897241	5.65954823644585	5.27782471967339	5.28348140195093	5.01319055649631	5.23518755449515	-0.237737225879451	0.457786295170608	0.740815521290183
Merged-chr4-131855203-4	chr4	131855098	131855298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025297, intron 3 of 9)	intron (NM_025297, intron 3 of 9)	11727.0	NM_025297	26922.0	Mm.192706	NM_025297	ENSMUSG00000028910	Mecr	AI195831|NRBF-1|Nrbf1	mitochondrial trans-2-enoyl-CoA reductase	protein-coding	7.00361335145244	7.54717503569587	7.16889921704441	6.35868492294629	7.23169224319548	7.0779440661178	7.03022532266184	6.68922044570262	-0.079367125465907	0.777380121932147	0.913165246826363
Merged-chr2-18997616-3	chr2	18997527	18997727	+	908.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024323)	promoter-TSS (NR_024323)	494.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	4.46543041242787	4.23934693538398	4.75503834447129	4.39251708610967	4.47210491135778	4.32279646488552	4.2736909983507	4.33537954043758	-0.255824008097887	0.509392798147516	0.773990268606403
Merged-chr6-91684021-4	chr6	91683950	91684150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009320)	promoter-TSS (NM_009320)	-17.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	7.60915949780797	7.63999871788234	7.60187684357283	7.10109051165565	7.704154734198	7.6991717707181	7.4756781510543	7.52589763232804	0.149767699193191	0.459578164405428	0.742078333053983
Merged-chr4-140961254-4	chr4	140961163	140961363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023374)	promoter-TSS (NM_023374)	-8.0	NM_001355515	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	8.36635429272363	8.60923590790275	8.28433930252386	8.25794455695573	8.4637739915904	8.37268478866355	8.55379816748782	8.31291878964111	0.0571110861463405	0.72810794566752	0.891779294267982
Merged-chr17-67196483-2	chr17	67196361	67196561	+	719.75	f0_balb.idr|f1_balb.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	157998.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	3.33308241974452	3.73411409161235	3.69690654880164	3.93597616750754	3.67192510763456	3.81550194070426	4.04324969329707	3.52567066759436	0.212854265673037	0.681035463666894	0.869054420637198
Merged-chr13-46810284-3	chr13	46810176	46810376	+	817.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010617, intron 14 of 37)	ORR1E|LTR|ERVL-MaLR	-82427.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	3.5836758289406	3.50711502555186	3.32301194792766	3.22123601046667	4.31010882848318	3.87455773976573	3.97183374257981	3.98802645027701	1.9822097911885	3.34242818456982e-05	0.000796220534636865
Merged-chr11-93988092-4	chr11	93987999	93988199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7992.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	6.80635425674023	7.1468099388974	7.0664409303683	7.32496937378587	7.41423816995376	7.24357040555143	7.20255965036626	7.28622659111971	0.242182105870812	0.228613491339359	0.537453502660246
Merged-chr5-103628688-3	chr5	103628579	103628779	+	846.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029415, intron 1 of 5)	intron (NM_029415, intron 1 of 5)	724.0	NM_029415	75750.0	Mm.7446	NM_029415	ENSMUSG00000029321	Slc10a6	8430417G17Rik|C78479|Soat	solute carrier family 10 (sodium/bile acid cotransporter family), member 6	protein-coding	3.52380718047771	3.33840913966647	3.37401516345481	3.59822449448762	3.05791564132982	2.96667294723895	3.19219301410401	3.1398375159701	-1.47049322596975	0.0103353173280397	0.080868149070302
Merged-chr17-78200172-4	chr17	78200006	78200206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015800)	promoter-TSS (NM_015800)	-142.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	6.97985485868288	6.85884221478359	7.06795007403595	7.17970019131926	6.94233163018735	7.20812204702993	7.18929537694157	7.07490326617812	0.0909979115074805	0.64309693271215	0.849459897971419
Merged-chr16-31080756-3	chr16	31080661	31080861	+	845.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 1 of 3)	CpG	671.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	3.883722550069	3.68823243812871	3.92993877028928	3.91048690830601	3.5920535536609	3.74314855159399	3.72094333673043	3.73374379788513	-0.497107696248565	0.276613445602399	0.588594315402624
Merged-chr11-60936154-4	chr11	60936057	60936257	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008928, intron 1 of 11)	MIRb|SINE|MIR	4100.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	5.06114884225696	4.89540520072829	4.91958283054001	5.10612644693992	5.022994241526	5.05808777665853	5.25185725652135	5.38305537956893	0.332360203936648	0.285217880337929	0.596953252281083
Merged-chr5-140830606-4	chr5	140830510	140830710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010302)	promoter-TSS (NM_010302)	-179.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	8.79067113632391	9.07767057705396	8.69524065640366	8.65459956026505	8.74884651581716	8.9119575382874	8.71124247227415	8.69843838721658	-0.0554744995731209	0.735566487244007	0.895620853939579
Merged-chr1-157536722-2	chr1	157536622	157536822	+	933.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159986, intron 8 of 25)	intron (NM_001159986, intron 8 of 25)	10552.0	NM_001159986	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	3.24532344855124	3.40757330931794	3.18552760187599	2.92806197608109	3.24276423521443	3.41769401756498	3.17412232558719	3.40924808052505	0.441514773370349	0.431055969250035	0.721457224305122
Merged-chr15-77831476-4	chr15	77831381	77831581	+	912.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	10694.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	4.47310899553999	4.81749560258516	4.42977421791171	4.39695599400454	4.92366942020209	4.56029694718623	4.61441015203338	4.28549046065153	0.20070214663999	0.606027471514475	0.829291552501708
Merged-chr3-104432016-3	chr3	104431988	104432188	+	880.366699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79830.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	2.97126652439922	3.11273334201536	2.97162956013083	2.9021576837341	2.94809712765811	2.95050520725575	2.89983315573135	3.02940995765599	-0.130209400861584	0.823561963502111	0.932316257397365
Merged-chr10-19907475-4	chr10	19907381	19907581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008822, exon 1 of 10)	exon (NM_008822, exon 1 of 10)	193.0	NM_008822	18634.0	Mm.338363	NM_008822	ENSMUSG00000020003	Pex7	MmPEX7	peroxisomal biogenesis factor 7	protein-coding	7.49377545064584	7.60214813304388	7.89334040130331	6.98134180301371	7.10379692012845	7.58673326392842	7.31223283319579	7.54386958615057	-0.170580103723388	0.480757613663353	0.756125456193411
Merged-chr18-7608765-2	chr18	7608661	7608861	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360860)	promoter-TSS (NM_001360860)	-607.0	NM_001360860	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	2.0413467290892	1.9999736300321	2.04149949101389	1.78510002343178	2.40545547982309	2.47615861212044	2.66924252478899	2.98344480198392	6.61914516297788	9.79332810403029e-10	6.29701265688141e-08
Merged-chr1-171564475-4	chr1	171564388	171564588	+	849.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018729, intron 1 of 8)	MTC-int|LTR|ERVL-MaLR	5295.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	4.90353605716705	5.32207541134792	4.72164992739397	4.66821529124452	4.60157797118771	4.73217957896969	4.77500739547173	4.5512911933955	-0.539722671348322	0.142357555202275	0.419897244509492
Merged-chr4-128654632-4	chr4	128654514	128654714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195130)	promoter-TSS (NM_001195130)	-88.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	6.99135491470254	7.23065589865054	7.00535750903606	6.79283437333474	7.32571660059834	7.24421418782366	7.27232475516027	6.96169244661224	0.282682992108189	0.166464860000816	0.457775001145587
Merged-chr1-161876870-4	chr1	161876752	161876952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357401)	promoter-TSS (NM_001357401)	-170.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	9.56834687960332	9.64012270056668	9.74729860685899	9.69476332127945	9.77569820219967	9.94059447391453	10.0430409299315	9.76291689648759	0.268466757196157	0.0571825730777931	0.25064341210076
Merged-chr16-90830059-4	chr16	90829957	90830157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_133572)	promoter-TSS (NR_133572)	-802.0	NR_133572	70967.0	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	6.31251472616278	5.99676499745509	6.23897911756191	6.23754025565752	6.38994183059198	6.01429965884585	6.54071369790229	6.3270893977515	0.204754156450904	0.388500268444349	0.688981838974675
Merged-chr11-85684492-2	chr11	85684392	85684592	+	941.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	35252.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	3.01191893314666	2.8561182143372	3.01231245719231	2.83671395085509	2.99424806065036	2.99770925291954	2.81562792290055	3.06770336660638	0.206473897754742	0.7267449967667	0.891264337092642
Merged-chr15-73457138-2	chr15	73457038	73457238	+	590.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33947.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	3.35090259410539	3.71806136718409	3.17933068793726	3.13846062088557	3.23677662383173	3.16122539666831	3.04123210348128	3.11510303921723	-0.832042272618962	0.15747881497104	0.444059226672193
Merged-chr1-151250347-2	chr1	151250247	151250447	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94139.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	2.7724682790839	2.78267558239695	2.89164707622747	2.50535301736061	2.76118799112283	2.94277087751735	2.5644508246157	2.57055934800567	-0.0972399002066094	0.885918770529681	0.95718457248159
Merged-chr2-129545658-4	chr2	129545563	129545763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9061.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	5.88709526668131	5.90667789112187	6.18218328197432	6.22897254155655	6.15830060112347	5.86151554037672	5.78570625409134	5.99691550777895	-0.160932416874883	0.52731929758724	0.784312526808804
Merged-chr13-55593150-4	chr13	55593037	55593237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026211)	promoter-TSS (NM_026211)	2.0	NM_026211	67511.0	Mm.45233	NM_026211	ENSMUSG00000058569	Tmed9	2400003B06Rik	transmembrane p24 trafficking protein 9	protein-coding	6.76859866838793	6.8080194306077	6.36554602017194	6.77327103499392	6.88684843931991	6.97471827321421	7.11586319131532	6.77929757191251	0.344258656947938	0.105896597932799	0.358490152395066
Merged-chr10-78139221-3	chr10	78139077	78139277	+	862.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30591.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	2.65629486603421	2.9128481970505	2.58258393586388	2.76592749938581	2.69713468211529	3.02719056540598	3.06999515624492	2.91588816591586	0.861755820261971	0.18254960638316	0.479145709984439
Merged-chr4-3796108-3	chr4	3796015	3796215	+	887.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39540.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	3.17193194644913	3.5568125081226	3.4169673075778	3.32821222146778	3.21679217797367	3.47430407602592	3.40361837861961	3.66702699066264	0.240970303423634	0.650905445030592	0.853561160209376
Merged-chr8-77272858-4	chr8	77272760	77272960	+	831.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 20 of 22)	intron (NM_030113, intron 20 of 22)	-244196.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	3.7717242777559	3.78326720747742	4.43999031050221	4.2480570242282	3.46849508991261	3.95215468116443	4.10847392485301	4.21030974459924	-0.349844715732244	0.497113117342834	0.766966827340319
Merged-chr13-3539075-3	chr13	3538954	3539154	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	979.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	4.69321669451723	4.8147576617279	5.31631478688869	5.67570844196876	4.72128315269043	5.14831700380984	4.94874487100962	5.07258468881955	-0.432531020825187	0.264695629713031	0.576566406596513
Merged-chr14-30550032-4	chr14	30549907	30550107	+	972.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009388, intron 1 of 13)	intron (NM_009388, intron 1 of 13)	876.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	4.55804450080327	4.57504069346775	5.23029275844552	4.88816828969393	4.50802149841186	4.05087691615535	4.40588458823462	4.88819897130956	-0.734385647903072	0.0839634194277427	0.315091356869724
Merged-chr5-137294532-4	chr5	137294424	137294624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027356)	promoter-TSS (NM_027356)	-145.0	NM_027356	70240.0	Mm.124666	NM_027356	ENSMUSG00000051502	Ufsp1	2700038N03Rik|D5Ertd655e	UFM1-specific peptidase 1	protein-coding	7.49719319973973	7.69462658718627	6.78491228779008	7.30073518313066	7.318713179789	7.46914510385807	7.60636258303012	7.38934629251914	0.113304965581034	0.620517142301641	0.837304069609261
Merged-chr13-48862099-3	chr13	48862002	48862202	+	967.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011078, intron 1 of 21)	ORR1F|LTR|ERVL-MaLR	8783.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	4.46138632515254	4.41153330724426	3.83721912731043	4.16959426138002	3.92472921641888	3.77358606886442	3.98234289986598	4.18499808034242	-0.695643900947189	0.123772583605618	0.390306961211426
Merged-chr10-41930077-3	chr10	41929957	41930157	+	956.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 12 of 17)	RSINE1|SINE|B4	42618.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	3.49949928970078	3.65261301773105	4.02049452082229	3.87661451274818	3.23122728799782	3.49330564206163	3.30168881904937	3.71259083997522	-1.09577595995599	0.0412239997271982	0.205426922648256
Merged-chr8-35658447-3	chr8	35658350	35658550	+	857.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	ORR1E|LTR|ERVL-MaLR	-69430.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	3.68537211351707	3.69393768218182	3.36526830040035	4.00624100007848	3.3440025082122	3.20893455802058	3.4677402617754	3.16852098469261	-1.42053862822383	0.0116737465527915	0.0881151225748826
Merged-chr11-100395429-4	chr11	100395334	100395534	+	968.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010593, intron 1 of 13)	intron (NM_010593, intron 1 of 13)	2356.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	5.15720351646048	5.00143036128786	4.69576011725658	5.05852132210781	5.12283647792928	5.20488607978002	4.58684160083027	4.89055282699175	-0.03296054808318	0.924055919458368	0.971898050418734
Merged-chr11-74634709-4	chr11	74634602	74634802	+	797.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013784, intron 2 of 3)	intron (NM_001013784, intron 2 of 3)	-14793.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	4.6269295160679	4.5009373143636	4.20469047021584	3.80355510734498	4.20463620108271	4.18590606254911	4.04276899298836	3.95149214975297	-0.525037246878588	0.256030572412794	0.567619763090084
Merged-chr1-120524369-4	chr1	120524263	120524463	+	984.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19339.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	5.24385299678216	6.08757943999625	6.2561102093396	5.07328988920356	6.8049197429191	6.39549564973622	6.50212900069951	6.37438416574041	1.1825966393595	0.000538987068953978	0.00820281389375138
Merged-chr10-99577466-4	chr10	99577389	99577589	+	788.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31682.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	3.81194208879698	3.66400786612069	3.60081292709238	3.59324353280556	3.93164498656759	3.7178769342658	3.88919375470798	3.70890812765372	0.470717527855812	0.301058577893133	0.612994478573963
Merged-chr14-76010901-4	chr14	76010823	76011023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026816)	promoter-TSS (NM_026816)	-58.0	NM_026816	68705.0	Mm.20415	NM_026816	ENSMUSG00000067995	Gtf2f2	1110031C13Rik|AI326315	general transcription factor IIF, polypeptide 2	protein-coding	6.71762806887709	6.72053750953146	6.46007072175801	6.67098901068183	6.75686262724931	7.12068286074769	6.59407161718359	6.49082870943674	0.159314334888827	0.483375765287784	0.757806109710285
Merged-chr17-71207414-4	chr17	71207285	71207485	+	849.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164885, intron 1 of 19)	PB1D10|SINE|Alu	2731.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.46712638426043	3.71581246993582	3.46751996207768	3.74610231870483	3.89170210537026	3.99091449413727	4.19203167036217	4.09171232613723	1.20150257356784	0.0110227797795545	0.0846010828044972
Merged-chr13-73505870-3	chr13	73505773	73505973	+	902.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 9 of 13)	intron (NM_145376, intron 9 of 13)	-30874.0	NM_010020	13162.0	Mm.41993	NM_010020	ENSMUSG00000021609	Slc6a3	DAT|Dat1	solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	protein-coding	3.95933914682819	3.34237069657365	3.39525585962935	3.56935828886958	3.6105730854414	3.5749087771165	3.50450081999066	4.03750505567521	0.341939012583326	0.51867099746382	0.779675989312394
Merged-chr3-142577286-4	chr3	142577179	142577379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	16923.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	6.0787384094038	6.50615339748198	6.30328295467738	6.3682537784983	6.26602582427155	6.4414910271571	6.55195378935955	6.14036284054472	0.0393184721998276	0.866974628182013	0.95017995041061
Merged-chr11-55453825-4	chr11	55453749	55453949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 2 of 3)	intron (NM_009720, intron 2 of 3)	7359.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	7.1184994796185	7.26360359371877	6.93639877838189	6.61276934152526	7.23207569169743	7.26166073261758	6.97753261069388	6.58554291008019	0.0659626882299042	0.789133023882868	0.91835324030065
Merged-chr15-72549539-4	chr15	72549440	72549640	+	879.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3261.0	NM_001033876	223604.0	Mm.386856	NM_001033876	ENSMUSG00000036760	Kcnk9	Task3	potassium channel, subfamily K, member 9	protein-coding	4.19805212690153	4.18752823475934	4.10199244588302	4.1862930882923	4.30580790292964	4.41586798310575	4.22575024462822	4.40980738277262	0.412286051100154	0.281075272952575	0.593153291080506
Merged-chr11-22002079-3	chr11	22001963	22002163	+	808.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011023)	promoter-TSS (NM_011023)	-412.0	NM_011023	18423.0	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	3.97859790246868	3.73027319697973	4.10996692421628	4.0278590315189	3.38019667673703	4.1031572531336	3.86723173532003	3.54586604839515	-0.639092819806504	0.207340667839395	0.511340218839314
Merged-chr1-171844364-4	chr1	171844278	171844478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	4681.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	7.35788489539147	7.15118607979604	7.65831642107237	7.58834884323646	7.20063279461872	7.46272383045149	7.46700798454914	7.62866392558831	-0.0192938742171625	0.924652766317911	0.972154905448111
Merged-chr1-189799152-4	chr1	189799051	189799251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008976, intron 3 of 18)	intron (NM_008976, intron 3 of 18)	70883.0	NM_008976	19250.0	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	6.06976078593569	6.21917778507885	6.04764261568374	6.81094090216123	6.66356076938625	6.47843890980974	6.57280169766764	6.63158615958983	0.34459007467858	0.198752870430142	0.500407858383046
Merged-chr18-67715282-2	chr18	67715188	67715388	+	553.5	f0_balb.idr|f1_balb.idr	intron (NM_008977, intron 1 of 9)	MTC|LTR|ERVL-MaLR	9333.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	3.64507118023663	3.55029663573093	3.64559679764085	3.52829113621367	3.39547203526498	3.26698519166653	3.63039561294301	3.91813664639474	-0.046976407017474	0.927698092582972	0.973615800862715
Merged-chr10-30655860-4	chr10	30655759	30655959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111267)	promoter-TSS (NM_001111267)	8.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	7.09326204801553	6.94126045174712	7.50380255128272	7.41250554215469	7.36571203945606	7.01252513687442	7.76656040515877	7.57664720695036	0.267218737341442	0.252238058580529	0.56356496866418
Merged-chr15-76534153-4	chr15	76534055	76534255	+	851.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4591.0	NM_013909	30840.0	Mm.275279	NM_013909	ENSMUSG00000022559	Fbxl6	AU021795|Fbl6	F-box and leucine-rich repeat protein 6	protein-coding	3.73909405529576	3.50240715785946	3.51710569450239	3.7604761693248	3.66314449068836	3.91013869545039	3.50446340300998	4.05208077161835	0.458655349987745	0.351192559588332	0.658644512922243
Merged-chr5-108269438-3	chr5	108269328	108269528	+	893.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026106, exon 1 of 3)	5' UTR (NM_026106, exon 1 of 3)	531.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	3.51194420687462	3.84180819926033	3.68539989866673	3.21182649910132	3.76913157514696	4.09934851559211	3.77288577710246	3.73617784740308	0.831964165842625	0.101543226743746	0.349639383532947
Merged-chr9-25261202-4	chr9	25261109	25261309	+	832.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359738, intron 1 of 12)	intron (NM_001359738, intron 1 of 12)	8317.0	NM_001359738	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	4.12419740459802	3.87389588443675	3.71770563992523	4.16285989880731	3.99879939367566	4.24935760016737	3.96985870505703	3.88345416873977	0.0966928137887733	0.82848593569601	0.934169961374777
Merged-chr13-21787395-4	chr13	21787298	21787498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178202)	promoter-TSS (NM_178202)	-90.0	NM_178202	319188.0	Mm.264645	NM_178202	ENSMUSG00000069308	Hist1h2bp	-	histone cluster 1, H2bp	protein-coding	8.45068227404995	8.36862814111905	8.16496170910301	8.37785240056125	8.53206288833965	8.46896570349281	8.55940805189882	8.34173619159727	0.168336803053692	0.279653080231504	0.59170139406671
Merged-chr19-5094459-4	chr19	5094445	5094645	+	931.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009920, intron 2 of 5)	intron (NM_009920, intron 2 of 5)	3976.0	NM_001302333	12794.0	Mm.299737	NM_009920	ENSMUSG00000024873	Cnih2	CNIH-2|Cnil	cornichon family AMPA receptor auxiliary protein 2	protein-coding	4.08344957159681	3.60484404836401	3.56271050360686	3.69352486274415	3.99171784884467	4.33375969693422	3.97732091688884	3.68272971890075	0.740934127630139	0.123924967591392	0.390666338995867
Merged-chr19-29812966-4	chr19	29812852	29813052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177721)	promoter-TSS (NM_177721)	22.0	NM_177721	240614.0	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	5.68373235411846	5.91732626429992	6.12354341781291	5.71496302068043	5.79539512106146	5.780370357487	5.87121296300189	5.54236563336338	-0.175183793594828	0.509173176592874	0.773921693917156
Merged-chr11-50275075-3	chr11	50274925	50275125	+	916.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	17311.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	3.43075090029968	3.06582842152547	3.06398180515313	3.18646877656286	3.15883782501624	2.97449961541795	2.7882300162469	3.06246898268191	-0.748900361371993	0.220574560913514	0.528520559022423
Merged-chr17-70748167-4	chr17	70748039	70748239	+	930.0380859999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	98638.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	3.73580268659423	4.03375575893601	4.25339784516674	3.86255383976183	4.12239977656762	4.24492160706225	4.14638224037547	4.61735271626532	0.804011080965359	0.0646328937133392	0.270284045686021
Merged-chr10-127311237-4	chr10	127311138	127311338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003913, intron 1 of 20)	intron (NM_001003913, intron 1 of 20)	548.0	NM_001003913	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	5.09806186663146	5.33881616193097	4.85774464583723	4.65132998470476	5.12470986629037	5.10562275692838	4.87172249806607	4.69346849712677	-0.072739490674415	0.839579697700565	0.938950496537544
Merged-chr9-27030673-4	chr9	27030575	27030775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178027)	promoter-TSS (NM_178027)	500.0	NM_178113	78658.0	Mm.251777	NM_178113	ENSMUSG00000035024	Ncapd3	2810487N22Rik|4632407J06Rik|AI195468|AU018739|B130055D15Rik|mKIAA0056	non-SMC condensin II complex, subunit D3	protein-coding	7.34388567514581	7.51481035923775	7.18917018741665	7.49893088132827	7.63433828923948	7.64217605422773	7.70763840409542	7.5065691011985	0.29520680727431	0.0990326847164213	0.345000365379314
Merged-chr10-16751721-4	chr10	16751623	16751823	+	827.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	344059.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	4.59868055190528	4.40003609172823	4.77686705553427	4.88694579480129	4.34968713112011	4.21855924126812	4.37342050522704	4.39016919277509	-0.807208360028916	0.0343228705530562	0.183083603349519
Merged-chr4-135963637-4	chr4	135963531	135963731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356493)	promoter-TSS (NM_001356493)	-94.0	NM_001356493	74246.0	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	7.1166390400768	7.16898461792903	6.57078491126088	6.7284516088379	7.15955291353593	7.43367482125843	6.9380750506707	6.81964357887933	0.265132525529772	0.268163133247237	0.580046302045311
Merged-chr2-68873912-4	chr2	68873801	68874001	+	975.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	12460.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	4.36884488179583	4.82042038198744	4.58863180552218	4.72982681907333	4.63979317952075	4.59209068716674	4.56755505019892	4.62530697497208	-0.0885303155839467	0.803843260995137	0.924386633833188
Merged-chr1-156537861-4	chr1	156537698	156537898	+	913.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-20989.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	3.76115122890695	3.80697931640773	4.14210767342534	3.74989555983806	3.72148176974054	3.88208114217781	4.1227995300258	3.96357817965475	0.165526162152645	0.71563072015756	0.886331836593157
Merged-chr6-51586155-2	chr6	51586055	51586255	+	956.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 5 of 6)	intron (NM_001361577, intron 5 of 6)	40862.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	3.24454949892647	3.34790796272554	3.36547497331973	3.39103821771579	3.68930525515222	3.47853829449404	3.35305300167913	3.41996053379857	0.533491561438057	0.296707612642403	0.608626834590017
Merged-chr9-65741139-3	chr9	65741037	65741237	+	937.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 2 of 9)	intron (NM_172536, intron 2 of 9)	64589.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	3.71000152588896	3.80363665482148	3.61615138509574	4.03379430366297	2.80651173934381	3.11884845707627	3.06979480025751	2.9241758229081	-3.85639103041136	5.68888749824291e-07	2.08511494972931e-05
Merged-chr15-67087598-3	chr15	67087480	67087680	+	741.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	89302.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	3.44798393755374	2.89481739141001	3.16868226851805	3.12924301644207	2.81083645078284	2.7711986913472	2.57967024600271	2.66279557603921	-2.18535524475569	0.00247837394935054	0.027589643312609
Merged-chr6-71440727-4	chr6	71440600	71440800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024288)	promoter-TSS (NM_024288)	-63.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	9.42579926455134	9.51802041652494	9.46667251357598	9.34280324128161	9.5223633680078	9.58364165805535	9.59972393948905	9.36695485981405	0.102198790638132	0.460754142883527	0.742730753154873
Merged-chr6-85037828-3	chr6	85037713	85037913	+	696.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 1 of 21)	intron (NM_177077, intron 1 of 21)	31700.0	NM_177077	75914.0	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	3.45752215267688	3.74268223219894	3.51240027817206	3.3325807446464	3.41639343956988	3.45560273025342	3.20440225729756	3.56251742996876	-0.33510577111382	0.524034407255117	0.782704938068323
Merged-chr7-100845621-4	chr7	100845524	100845724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177073)	TTS (NM_177073)	17789.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	7.36401245663319	7.47554866635193	7.52484967821914	7.37671277062244	7.16312493335773	7.11859329161075	7.4789072974929	7.27742281639511	-0.227176134388944	0.217628473216108	0.52458861102812
Merged-chr18-56467356-4	chr18	56467281	56467481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	35249.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	5.07579348244714	5.23299610329699	5.1839907779679	5.64197124345283	5.55339406039708	5.45899972079265	5.34840844865684	5.79412997835814	0.38688990918828	0.217575014816041	0.524530803711802
Merged-chr5-118556506-4	chr5	118556412	118556612	+	894.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4207.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	4.44692815371606	4.99996215726306	5.19554082474932	5.21108692626594	4.37855808830696	4.31332844783736	4.56391248881412	4.98826344663986	-0.866990271643766	0.0327060449060733	0.177248634868996
Merged-chr17-5429576-4	chr17	5429466	5429666	+	991.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027457, intron 3 of 3)	intron (NM_027457, intron 3 of 3)	10694.0	NM_027457	70544.0	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	5.20150928952631	5.25565765573074	4.90167901641126	4.82048631928037	5.10302481213656	5.03976556816581	5.01970063619063	5.07398942096597	0.0310133697656866	0.922833868583861	0.971413012934631
Merged-chr14-79515676-4	chr14	79515592	79515792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286412)	promoter-TSS (NM_001286412)	18.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	5.42462194470123	5.53570606480251	5.17705749675371	5.23075322755607	5.51015100030209	5.35385778475001	5.39845144031568	5.52976232272516	0.19498696131904	0.491236598610697	0.76287755492671
Merged-chr5-120505516-4	chr5	120505419	120505619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1896.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	5.75186914875991	6.00423265557596	5.82505774247358	5.46509938943388	5.83186790379815	5.92805653388658	5.98873245747062	5.4737815538936	0.0935351842154204	0.740012634676943	0.897683586969888
Merged-chr18-90602029-4	chr18	90601880	90602080	+	945.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22155.0	NM_001362365	108168395.0	Mm.391131	NM_001362365	ENSMUSG00000110277	Gm45871	-	predicted gene 45871	protein-coding	3.95821235995328	4.2123082888618	3.90375847492906	3.58623939105412	4.83486566149949	4.3332044803293	3.77216879493845	4.328985342016	1.12119000413904	0.0223699837638283	0.137966647112515
Merged-chr2-27512588-2	chr2	27512488	27512688	+	879.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C1|LTR|ERVK	-2559.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	3.18465284278933	2.96529323962107	3.24043049355774	2.79611179121692	3.13283774189158	3.11406499808759	3.32952489206485	3.00193671971542	0.409564195737606	0.490042228980455	0.762020269511072
Merged-chr9-85400652-4	chr9	85400569	85400769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73519.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	6.00710313440288	5.78381609331305	5.8710584757326	6.40848137357553	6.18198003836238	6.16176732321625	6.08072762428662	5.65782246170449	-0.0308004434394414	0.913153758048656	0.967428663410909
Merged-chr10-99262423-1	chr10	99262323	99262523	+	1000.0	f0_balb.idr	promoter-TSS (NM_026268)	promoter-TSS (NM_026268)	-808.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	4.8120172481012	4.87621520193833	5.3728856207057	5.14259915723633	5.09819330015588	5.43318376117256	5.08208670732614	5.07031189877918	0.192135477038553	0.556075859904379	0.801817592418236
Merged-chr7-130834495-4	chr7	130834385	130834585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-31239.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	6.54993375661994	6.3339062428998	6.70926137013862	4.52909349388446	6.22562678806834	6.53035756911691	6.20742670467352	7.00309961700335	0.365545942141772	0.588467221025708	0.819738713937208
Merged-chr14-51088660-4	chr14	51088469	51088669	+	923.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2508.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	3.9410313241733	3.56078948007638	4.02518231029599	3.49256527551513	3.22089233414902	3.71622277887291	3.63695203324779	3.64984139273278	-0.631947947590812	0.236783894853961	0.546842605552418
Merged-chr19-5741989-4	chr19	5741878	5742078	+	874.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008520, exon 2 of 28)	5' UTR (NM_008520, exon 2 of 28)	1074.0	NM_008520	16998.0	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	3.96283344583081	3.97976971741069	3.96339935684309	4.14627091124417	3.9207836512481	4.03367431105911	4.33058014488406	3.96111057269885	0.112689575458197	0.792392197421077	0.919610988558604
Merged-chr11-69580839-3	chr11	69580797	69580997	+	952.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127233, intron 1 of 10)	intron (NM_001127233, intron 1 of 10)	538.0	NM_001127233	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	3.18514830579941	3.40835482808596	3.25334197246175	3.08703649956761	3.26361357852882	3.8224843490875	3.424918701976	4.02745767006707	1.43304323748207	0.0101231393142975	0.0796193296411474
Merged-chr7-4034455-4	chr7	4034358	4034558	+	854.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302675, intron 2 of 6)	Lx5b|LINE|L1	28746.0	NM_001302677	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	3.69437007982288	3.78512097375742	3.63782543037628	3.97681467951912	3.42888147392114	3.92359609806165	3.62398764188715	4.30205057577192	0.208166494902424	0.69061794508165	0.874035324365541
Merged-chr3-108018583-1	chr3	108018483	108018683	+	710.666687	f0_balb.idr	promoter-TSS (NM_010358)	promoter-TSS (NM_010358)	-610.0	NM_010358	14862.0	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	3.72736638567039	3.85348081957917	3.62507304572432	3.4794354205938	3.35504865285792	3.74355304333237	3.37981518087436	3.77407435117911	-0.319833958591408	0.53197369272894	0.787769192787069
Merged-chr7-4498400-4	chr7	4498300	4498500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029834, intron 1 of 21)	intron (NM_029834, intron 1 of 21)	3280.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	6.05596913210186	6.40626193154874	6.40822910723527	6.20698046843486	6.27295691705566	6.36077537576532	6.62014382402617	6.2780220841449	0.170002443879226	0.464278244046193	0.745322653487088
Merged-chr3-81141032-1	chr3	81140932	81141132	+	636.0	f0_balb.idr	intron (NM_001357746, intron 2 of 6)	URR1A|DNA|hAT-Charlie	104616.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	2.89447908426526	3.03597144129401	2.89483038097464	3.08806646884682	2.90810833125173	2.73134554915309	2.69347950227721	2.76748261676161	-0.932788618285422	0.143394923485437	0.421677639279897
Merged-chr8-120486596-4	chr8	120486525	120486725	+	814.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2241.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	3.76622669131445	3.89357324165037	4.01809196541151	3.59928867472063	3.96561549878615	4.09498542911605	4.16883826012908	3.70814491551283	0.499107784867596	0.273986022479989	0.585727262209282
Merged-chr7-142460743-4	chr7	142460748	142460948	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271509)	promoter-TSS (NM_001271509)	36.0	NM_001136071	16985.0	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	4.32225708333657	4.23369206648137	4.37054840301563	4.27397462369049	4.85671802740488	4.93951095926683	4.67677536339845	4.65955088565953	1.08951765397503	0.00196756377135577	0.0231410371843445
Merged-chr3-9067281-4	chr3	9067184	9067384	+	811.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040597, intron 2 of 2)	intron (NR_040597, intron 2 of 2)	5320.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	4.21116678568502	3.79030209307015	3.72092802113951	4.15375465446138	4.11631792721632	4.11225901012356	3.97277584471925	3.93786614145861	0.114673008506229	0.797429167153739	0.921656421025185
Merged-chr6-48840489-4	chr6	48840372	48840572	+	982.857178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023056, exon 1 of 7)	5' UTR (NM_023056, exon 1 of 7)	516.0	NM_023056	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	3.94231694149805	3.55440349583815	4.11871852704484	3.91353556903771	3.67127982339022	3.85865798448663	3.92575935772773	3.89253359504743	-0.169852773232669	0.714829867016691	0.886003030420421
Merged-chr13-101918378-4	chr13	101918284	101918484	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-150167.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	5.50541785903302	5.2248896815391	5.5592885922268	5.95664367699063	5.44329185924138	5.34604987253811	5.27541456869534	5.29787580078881	-0.459409530237995	0.138486943450705	0.413987825446446
Merged-chr2-159900141-4	chr2	159900028	159900228	+	985.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47213.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	5.80573636542474	5.2251248176804	5.18899679211329	5.82253646157485	5.80678452542349	5.50361901065025	5.50717525097554	5.75742395587806	0.162440522640216	0.602066736486845	0.827431600688833
Merged-chr4-126227216-4	chr4	126227092	126227292	+	929.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24482.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	4.80194077802493	4.64542220403534	4.54640313850674	4.44106566807068	4.34853296096096	4.63652289892178	4.60332838250719	4.32293220815419	-0.282257711137903	0.447522180008335	0.733038344282897
Merged-chr8-10902659-3	chr8	10902559	10902759	+	879.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_102285)	TTS (NR_102285)	2737.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	3.40691807687096	3.28662786579383	3.46134518160059	3.44279649686849	3.48218095741217	3.34165901917579	3.54761667096985	3.16438486413021	-0.0213281102118607	0.967446740552476	0.988536511573071
Merged-chr15-95820743-3	chr15	95820643	95820843	+	898.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	9329.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	3.79589467331177	3.55593997272255	3.44354014163793	3.60877349893875	3.39336456159027	3.72443670712267	3.24667209785688	3.38249961998776	-0.536095149606863	0.302292870109994	0.614677894595004
Merged-chr1-124071890-4	chr1	124071791	124071991	+	934.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26332.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	5.03566327089367	4.55123653086248	5.03652197862429	5.21239343805645	4.63294037241712	4.72422622095485	4.7346429022544	4.86584961718594	-0.518142489250983	0.143871103477789	0.42244962148614
Merged-chr11-103406026-4	chr11	103405916	103406116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 1 of 11)	intron (NM_183034, intron 1 of 11)	6648.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	5.41659639323007	5.2204969144985	5.38836386732782	5.36928045003341	5.67814274962222	5.50317450059394	5.41882782441696	5.52400780372118	0.335231093359937	0.22075524154798	0.528760195965722
Merged-chr10-127320300-4	chr10	127320241	127320441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1623.0	NM_001285785	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	5.24295368478109	5.70716157116422	5.75767533507702	6.00840231373777	5.22150390315301	5.52350828301954	5.60590039648359	5.9078313134029	-0.237482772746934	0.455272059752169	0.738860613109677
Merged-chr5-32611585-4	chr5	32611485	32611685	+	905.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009535, exon 1 of 12)	5' UTR (NM_009535, exon 1 of 12)	414.0	NM_009535	22612.0	Mm.4558	NM_009535	ENSMUSG00000014932	Yes1	Yes|p61-Yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding	3.85740069823012	3.46510427375827	3.90627954268998	3.66193859865956	3.8818073019038	3.82083605439171	3.68662703065912	4.15985074114604	0.497122720747642	0.292420055891496	0.604764132791958
Merged-chr2-118587842-4	chr2	118587747	118587947	+	851.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-10364.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	3.95415103174786	3.75251692178554	3.60671564251533	3.60430947681502	3.86764610100794	3.8344881310382	3.75235418849732	3.6048552767363	0.130386137930435	0.779896676182194	0.914248678568033
Merged-chr17-47864686-4	chr17	47864569	47864769	+	991.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29978.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	4.63308089277808	5.19689490713072	4.80569317028187	4.68192881804034	5.46484306880407	5.13273364374826	5.2468127131488	4.98962592858413	0.738841892929728	0.0293618703969129	0.164900471278355
Merged-chr1-163403735-4	chr1	163403643	163403843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132627)	promoter-TSS (NR_132627)	-74.0	NM_178883	98376.0	Mm.32901	NM_178883	ENSMUSG00000040124	Gorab	NTKL-BP1|SCYL1-BP1|Scyl1bp1	golgin, RAB6-interacting	protein-coding	6.93268873445125	6.75011367218869	7.00974774260717	7.02757380506053	6.79372611633316	6.97355279122102	7.40399800322154	6.66953357424431	0.0718557569903229	0.755550495240798	0.903814786743389
Merged-chr2-93823729-4	chr2	93823655	93823855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1187.0	NM_001355076	14043.0	Mm.4336	NM_010163	ENSMUSG00000027198	Ext2	AI893565	exostoses (multiple) 2	protein-coding	6.93533728194339	6.88295866110285	6.62191466511971	6.80616810349551	6.86756243275569	6.93678075550758	6.6965812455355	6.85340099652021	0.0340563568026747	0.864501940232593	0.949184219382502
Merged-chr16-91729217-4	chr16	91729124	91729324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133679)	promoter-TSS (NM_133679)	-147.0	NM_001110275	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	7.31414012538623	7.43554760498091	7.18393495458322	7.23885831868891	7.57891683602053	7.37236721093012	7.21520959606299	7.47585918020228	0.172538763358494	0.353869302569699	0.660687722859088
Merged-chr17-31223960-2	chr17	31223860	31224060	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177823, intron 6 of 13)	intron (NM_177823, intron 6 of 13)	15894.0	NM_177823	328795.0	Mm.387930	NM_177823	ENSMUSG00000042345	Ubash3a	5830413C03Rik|C330001M22|Sts-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing, A	protein-coding	2.69496913988775	2.74396102467397	2.95268929275237	2.86557027287508	2.84072691091723	3.00089452899954	2.94148140924063	2.95112167082387	0.491491266037246	0.41694296957737	0.710744672757979
Merged-chr17-5576897-4	chr17	5576810	5577010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	84310.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	6.25423012780448	5.95846377361319	6.31095764031109	6.75049319280336	6.29143733241131	5.9579553105363	6.18500647761141	6.2881829787664	-0.267587680371849	0.321501958388391	0.633178683838219
Merged-chr2-167001111-4	chr2	167001012	167001212	+	869.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-4813.0	NM_001109905	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	4.49735926703558	4.56116509097165	4.13527696953132	4.05876792343433	4.69692121507785	4.26198424349722	4.47706484476664	4.4550639770825	0.395223107254881	0.32872887995851	0.640144325858488
Merged-chr18-39802264-4	chr18	39802151	39802351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28754.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	6.36327750143647	6.8938363199978	6.20817068584129	6.26473166436073	6.65061706036643	6.90380755079196	6.47008176939862	5.90079991195501	0.101275333155936	0.729625880650318	0.89273193260024
Merged-chr14-106787563-4	chr14	106787469	106787669	+	700.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-301049.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	3.79210540077661	4.04333949536493	4.04794659822719	4.32783600051307	3.74178229669962	4.21648474631075	3.88479972055643	4.09113787388803	-0.253912867707277	0.581655114256306	0.816420227529328
Merged-chr2-79131449-4	chr2	79131345	79131545	+	874.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123981.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	4.5492245956811	4.2074451817872	4.47515461056023	4.28303063894247	4.18910992631918	4.56644526360481	4.33388378966982	3.70896605574383	-0.356885759771297	0.42297882206721	0.714938134013999
Merged-chr16-23107403-4	chr16	23107298	23107498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001123037)	promoter-TSS (NM_001123037)	-70.0	NR_152586	13682.0	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	5.70750598487748	5.66565632454146	5.85676405238542	5.9016545359178	5.72355700006137	6.05448702212034	6.13360743242411	5.85259799284105	0.237563553172426	0.356735188913969	0.663170665190731
Merged-chr5-108694171-4	chr5	108694082	108694282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164259)	promoter-TSS (NM_001164259)	-47.0	NM_001164259	116701.0	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	8.02089465112549	7.6138972839829	7.59444110001448	8.04067904996208	7.84709660767048	7.7901174493728	7.90387796457183	7.87309738940156	0.0152732568258335	0.934807256166238	0.97635719558922
Merged-chr11-8689047-4	chr11	8688936	8689136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24501.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	7.15214269471225	6.65937732844272	7.10799649901	7.06881625523463	7.09611098097128	7.1635024503914	7.04900187664135	7.00701249034518	0.0953422037162075	0.638084880598352	0.847040716325261
Merged-chr15-53415557-4	chr15	53415469	53415669	+	696.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69386.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	3.36196158922201	3.41356128428744	3.69564454789947	3.57704382820214	3.60490897841405	3.76333830335557	3.57937335623777	3.59178137508498	0.359843811193744	0.459609978683437	0.742079588810442
Merged-chr7-101547902-4	chr7	101547778	101547978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	7924.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	7.35608335647221	7.84487761217174	7.08394083311993	5.95947903974508	7.87309839816639	8.10852382090643	7.5096585945824	7.42189588575456	0.689628826487823	0.188288055865996	0.486855402807531
Merged-chr7-102250748-4	chr7	102250649	102250849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019566)	promoter-TSS (NM_019566)	-631.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	9.04732525651003	9.23710885702319	9.12746297582048	8.82273753088267	8.94033978593433	9.0908526602639	8.97086632555396	8.59076697649601	-0.190090060100368	0.275750911752717	0.587690105624487
Merged-chr7-127480594-4	chr7	127480491	127480691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-4630.0	NM_010183	14123.0	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	6.36459086549651	6.65565683294152	6.11104545520986	6.16906548551636	6.35705430997775	6.32974539415267	6.45138942825663	6.39626734903629	0.0679386406617405	0.774067607006224	0.911716359199097
Merged-chr13-58593363-4	chr13	58593279	58593479	+	905.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022317, intron 1 of 17)	MER67A|LTR|ERV1	17498.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	4.0029800770118	4.31845626864755	4.21340205947576	4.20891362876713	4.38366085615788	4.60674525145754	4.60272366911455	4.51206406563918	0.773155854275103	0.0416363266681641	0.206656435370918
Merged-chr10-117824424-4	chr10	117824314	117824514	+	826.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 2 of 7)	ID_B1|SINE|B4	21560.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	4.26889503021761	4.40485812077185	3.87188489971162	3.50962650855124	3.7519731812546	3.94209600895313	3.6923142010629	3.76191378614417	-0.74317977913817	0.148346074164874	0.430071295027352
Merged-chr4-48124486-3	chr4	48124375	48124575	+	946.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026343)	promoter-TSS (NM_026343)	-444.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	3.91401141687587	4.29151873535797	4.3559573320491	4.10511830478354	3.83946217353463	3.98247768663233	4.04613528622313	3.80270479522159	-0.692824518752401	0.11210647873184	0.370075891628389
Merged-chr18-56572939-4	chr18	56572868	56573068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019996)	promoter-TSS (NM_019996)	-29.0	NM_001127338	110695.0	Mm.30250	NM_138600	ENSMUSG00000053644	Aldh7a1	Atq1|D18Wsu181e	aldehyde dehydrogenase family 7, member A1	protein-coding	7.45223000394889	7.39090457633669	7.38289252003804	7.76754720147211	7.56030318625084	7.48598989120566	8.09956613286479	7.75158055824131	0.299264573633806	0.156465673659038	0.442368532943147
Merged-chr10-127665395-6	chr10	127665267	127665467	+	891.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008668, intron 1 of 6)	intron (NM_008668, intron 1 of 6)	1336.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	4.74929310260743	4.44063180116354	4.48632964139926	4.32226003679546	4.52726178550864	4.57405427886034	4.54619972348683	4.44094623354071	0.0647916123306181	0.860092680461112	0.947123023003096
Merged-chr13-100601302-7	chr13	100601220	100601420	+	925.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038602, intron 3 of 6)	intron (NM_001038602, intron 3 of 6)	15624.0	NM_178410	218518.0	Mm.25300	NM_178410	ENSMUSG00000021636	Marveld2	BC003296|MARVD2|Mrvldc2|Tric|Trica|Tricb|Tricc	MARVEL (membrane-associating) domain containing 2	protein-coding	4.84068490202015	4.93456820044163	5.01796253819047	5.23335413416465	4.88602774810621	4.52758634494001	4.74132243665744	5.30665013074729	-0.249149332285263	0.489305131920379	0.761644273605242
Merged-chr13-37825974-4	chr13	37825869	37826069	+	951.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033615)	promoter-TSS (NR_033615)	-69.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.52068203308146	4.62219022455642	4.74554383241255	4.44416566846331	4.05665262566821	4.73362906049682	4.28045623121236	4.59756899750549	-0.338273209564732	0.398512923691074	0.696793179038619
Merged-chr4-150855046-4	chr4	150854945	150855145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040649)	promoter-TSS (NR_040649)	-25.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	7.66826797177409	7.9336518097977	7.72878338834037	7.56031831766273	8.03734295287825	8.33564852914106	7.78630471165303	8.06786220878034	0.445128392517218	0.0186564150597213	0.122233520575838
Merged-chr7-47053537-5	chr7	47053459	47053659	+	817.293335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026436, exon 3 of 3)	exon (NM_026436, exon 3 of 3)	2919.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	3.40032798862623	3.17468327666569	3.12701252313297	3.16848343829835	3.05836910896086	2.88759458097892	3.38599650674953	3.18499881778205	-0.298732694440649	0.607464383423353	0.830012990472744
Merged-chr9-107611768-4	chr9	107611666	107611866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2525.0	NM_001291539	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	5.65891305989788	6.13154800447114	5.92070096836754	5.8416466962187	5.56750370939467	5.91145848847525	5.40283639652989	5.51708375549902	-0.479884217590471	0.0824691737146932	0.311792083612057
Merged-chr17-36032756-4	chr17	36032654	36032854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010398)	promoter-TSS (NM_010398)	-53.0	NM_010398	15040.0	Mm.439648	NM_010398	ENSMUSG00000067212	H2-T23	37b|37c|H-2T23|H2-Qa1|Qa-1|Qa-1(b)|Qa1|Qed-1|T18c|T18c(37)|T23b|T23d	histocompatibility 2, T region locus 23	protein-coding	7.83238791925129	7.65154421697563	7.4101291582321	7.40403562974139	7.09086047467897	7.02978082086549	7.0359266377436	7.19628254224258	-0.665818307570903	0.000658555242272051	0.00961150370918235
Merged-chr2-165949840-4	chr2	165949758	165949958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42779.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	6.77118186925622	6.81732508189016	6.95700648758481	6.70160076619277	6.7403277786385	6.79805144532932	6.77978767240965	6.60069172586848	-0.106879716311426	0.593414184652056	0.822739598538124
Merged-chr4-123282701-4	chr4	123282617	123282817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356377)	promoter-TSS (NM_001356377)	-194.0	NM_148917	230721.0	Mm.277091	NM_130881	ENSMUSG00000011257	Pabpc4	-	poly(A) binding protein, cytoplasmic 4	protein-coding	6.34435905056028	5.99656289173728	5.5487055159505	5.5150865829256	6.02834812687918	6.06418428610007	5.78834453028896	5.78935244354521	0.0640133907027775	0.831242278371442	0.935322338382222
Merged-chr2-180970556-2	chr2	180970438	180970638	+	958.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145760, intron 2 of 13)	intron (NM_145760, intron 2 of 13)	3238.0	NM_001177706	228998.0	Mm.33765	NM_145760	ENSMUSG00000027575	Arfgap1	AI115377|Arf1gap	ADP-ribosylation factor GTPase activating protein 1	protein-coding	3.25528940063916	3.4333857326294	3.25569148682163	3.07423654935419	3.30729149455569	3.54376242693917	3.35978092976669	3.52905956740179	0.652766433497018	0.216009373346703	0.52240905990201
Merged-chr3-86999235-4	chr3	86999133	86999333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007639, exon 1 of 6)	exon (NM_007639, exon 1 of 6)	107.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	5.27255572441271	5.21035805623216	5.30266235938531	5.13794406671281	5.10345247485877	5.11375790973983	5.21764357327742	5.20925493537225	-0.118982124570999	0.68344064324276	0.870321523309355
Merged-chr2-124775865-4	chr2	124775637	124775837	+	936.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122156.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	3.40905455911083	3.73390504813127	3.52441085188288	3.78626985817973	3.35187310873583	3.52320513023255	3.51083854211227	3.57626823394137	-0.477417708122278	0.344991880673044	0.653357561969643
Merged-chr10-44527299-4	chr10	44527230	44527430	+	869.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68582.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.34025212347571	4.1551172434816	4.16489707602965	3.94996788032581	3.89754652029221	4.29172990926616	4.50915679704967	4.29640024770523	0.277727555804049	0.515204938245146	0.777421981712307
Merged-chr2-128751696-2	chr2	128751596	128751796	+	806.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 5 of 18)	URR1B|DNA|hAT-Charlie	52781.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	3.21662932241772	3.33756523033324	2.88617665571083	3.04492664398912	3.2465135088133	3.44352815968122	3.31560059108706	3.2153567886679	0.659074393783008	0.240571586748403	0.551184374840332
Merged-chr3-157635859-4	chr3	157635766	157635966	+	990.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011196, intron 2 of 2)	intron (NM_011196, intron 2 of 2)	68974.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	5.51697628604819	5.36543453060253	5.12630212330488	5.04226312704427	5.09924166518665	4.92856217721213	4.96391569250365	5.15516644336823	-0.415290341049575	0.19153191824696	0.490934932097934
Merged-chr16-4893677-4	chr16	4893556	4893756	+	902.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	7556.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	4.10468765941643	4.02838230888657	4.15283380002763	4.17868514995897	4.19915983235313	4.41282965303634	4.08787950189424	4.28300020751487	0.315665645134999	0.426976266324922	0.718234557355738
Merged-chr7-92980973-4	chr7	92980864	92981064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98915.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	6.2559968465744	5.99577557006765	6.23801456011564	6.44448868425386	6.11301990409848	6.03905611479588	6.55439793488519	6.39560535676899	0.0537531575178103	0.830461911314657	0.934997048219198
Merged-chr13-100403113-4	chr13	100403011	100403211	+	934.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49753.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	5.14714413610996	5.15955225097959	5.68101598871008	4.80689826917207	5.72542438504784	5.96969981702007	5.4985687831079	5.97659160695603	1.00910023115371	0.001866896478532	0.0221657755538664
Merged-chr10-116727440-4	chr10	116727370	116727570	+	930.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045345, intron 1 of 2)	L1MDa|LINE|L1	1707.0	NR_045345	72286.0	Mm.396207	NR_045345	ENSMUSG00000100198	1700030O20Rik	-	RIKEN cDNA 1700030O20 gene	ncRNA	3.64339038502717	3.88046433739647	3.88374635309907	4.12887722838156	4.50060801892621	4.00621603816556	4.24296657965531	4.33923678745802	0.964473608886601	0.0333315118912492	0.179463213684359
Merged-chr15-81536091-5	chr15	81536018	81536218	+	992.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50096.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	4.55845562657174	4.70942484039242	4.96762560380088	4.1767544006818	4.70856691774766	5.22891229485442	4.70059717812943	4.68095126668194	0.473416794781421	0.233957967556106	0.543650161095435
Merged-chr10-98880300-4	chr10	98880196	98880396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34346.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	7.6851450690719	7.88620094149112	7.92911433454574	8.05933947992063	8.11520690079566	8.05578664544935	8.02541525562785	7.91665269375972	0.163719744400305	0.33401816974975	0.644765398508907
Merged-chr11-106487890-4	chr11	106487778	106487978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023913)	promoter-TSS (NM_023913)	-82.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	7.93318836751988	7.7763754553676	7.35348936055172	7.60902343033263	7.85621460491132	7.74996728915104	7.93652829269777	7.75342280281247	0.188122255351524	0.316577245134	0.628501150012355
Merged-chr5-150674370-4	chr5	150674208	150674408	+	961.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175310, intron 1 of 34)	CpG	481.0	NM_001346503	100710.0	Mm.32959	NM_175310	ENSMUSG00000034021	Pds5b	AI646570|AS3|AW212954|Aprin|Tg(Wap-ERBB2)229Wzw|WAP-Her-2|mKIAA0979	PDS5 cohesin associated factor B	protein-coding	4.7893978762583	4.48088586890081	4.57462458655899	4.71277203483388	4.40792641742375	4.34263485705132	4.38781342789606	4.49084323004196	-0.541469889429733	0.136159280033868	0.410613938350064
Merged-chr14-20834313-4	chr14	20834214	20834414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2348.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	7.30047316960906	7.68251174073812	6.96074559509366	7.22347984668168	7.32107964679104	7.42609696347785	6.97824595051606	6.90063980766851	-0.191977879509928	0.409735438277923	0.70525942551561
Merged-chr15-8169045-4	chr15	8168933	8169133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162906)	promoter-TSS (NM_001162906)	-73.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	7.4971427354144	7.45082485207	7.49842009569233	7.8664132919506	7.57460321642164	7.81158462726146	7.96465913058548	7.72792197552344	0.224460625760114	0.248411389615773	0.55951124300554
Merged-chr19-44067473-4	chr19	44067360	44067560	+	995.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145502, intron 2 of 10)	intron (NM_145502, intron 2 of 10)	2226.0	NM_145502	226144.0	Mm.279865	NM_145502	ENSMUSG00000025198	Erlin1	2810439N09Rik|C80197|Keo4|Spfh1	ER lipid raft associated 1	protein-coding	5.50504186370172	5.08005685105669	4.56831539483819	4.93221149327551	5.06615533118215	5.05131304413128	5.27425660964995	5.11789513663458	0.134413549430809	0.701636301849914	0.879767652498371
Merged-chr1-143738897-4	chr1	143738765	143738965	+	845.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023505)	promoter-TSS (NM_023505)	-484.0	NM_001038593	69367.0	Mm.272727	NM_023505	ENSMUSG00000018196	Glrx2	1700010P22Rik|AI645710|Grx2	glutaredoxin 2 (thioltransferase)	protein-coding	3.58685473661114	3.79658339906955	3.88290690062866	3.44543114878905	3.67560042536122	3.58731868967008	3.45916768557615	3.69152672251131	-0.219350311339784	0.658133694024433	0.857677183558236
Merged-chr18-75598173-2	chr18	75598056	75598256	+	862.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 6 of 11)	intron (NM_201354, intron 6 of 11)	83511.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	3.16863281139645	2.95130367269623	2.96945103100113	3.2289058177934	3.13014331933731	3.28196256135448	3.61394688007954	3.49313428699663	1.08146365446838	0.0627931894237196	0.265586572582503
Merged-chr10-34416769-4	chr10	34416680	34416880	+	784.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176968, intron 1 of 11)	intron (NM_176968, intron 1 of 11)	1771.0	NM_176968	319638.0	Mm.73467	NM_176968	ENSMUSG00000039480	Nt5dc1	6030401B09Rik|AW987726|Nt5c2l1	5'-nucleotidase domain containing 1	protein-coding	3.66668929777393	3.78349727741871	3.76887272039569	3.59071446522418	3.82315839401586	3.27008735111143	3.65249465211696	3.86059433119223	-0.0674578625354252	0.893532165181624	0.960259496156144
Merged-chr4-15995702-4	chr4	15995591	15995791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145950)	TTS (NM_145950)	18147.0	NM_001355615	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	5.01910097065564	5.35739645174426	5.52169816465048	5.4172292614352	5.46201983888657	5.43897715882323	5.41424820191653	5.3222530560549	0.113054292994772	0.695559510279086	0.876750613294995
Merged-chr18-69439529-1	chr18	69439429	69439629	+	651.5	f0_balb.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	93369.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	3.24108226347467	3.17281104899379	3.29592058973569	3.47817357224229	2.9488059709	2.96365995792482	2.92078693409577	3.34609431678566	-1.00617576030321	0.0935930648783569	0.334682781460767
Merged-chr4-108789451-4	chr4	108789349	108789549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-8361.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	5.68259162069435	5.95366385779859	5.55284076789554	6.06289821708438	5.54741710025702	5.52205532965919	5.2849630820127	5.34016063179843	-0.69818345272239	0.0142967422447395	0.101392844152805
Merged-chr10-7832225-5	chr10	7832129	7832329	+	757.483337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172785)	promoter-TSS (NM_172785)	-241.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	3.82271465326452	3.71090593102222	3.6725587770046	3.62168893094516	3.39887735916657	3.79141143635758	3.5479549782656	3.91217739455296	-0.103192947108696	0.832836643402282	0.936130745214861
Merged-chr6-134830110-4	chr6	134830013	134830213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177687)	promoter-TSS (NM_177687)	-86.0	NM_177687	232430.0	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	8.58112142818334	8.69256505274092	9.06995222695492	8.70282074990091	8.58226596395656	8.7266928259237	8.63420262252286	8.63251448603188	-0.162382576088393	0.327061174622768	0.63867529942819
Merged-chr16-23296985-4	chr16	23296889	23297089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	6519.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	6.8890664319456	7.10310917170588	7.20397182589284	6.97917160631325	6.92643017774876	6.72473370032669	7.1784476176458	7.18821253624013	-0.0387878490466109	0.851237598079188	0.943894442930937
Merged-chr1-144001531-4	chr1	144001383	144001583	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009061, exon 5 of 5)	3' UTR (NM_009061, exon 5 of 5)	2666.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	5.21356565818155	4.80930676556083	5.37340234764137	5.71785882622551	5.00937261952575	5.48932450233219	5.53875763653838	6.11340911784017	0.456716985160703	0.233895191574057	0.543577222708428
Merged-chr5-77460028-4	chr5	77459914	77460114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5474.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	6.2874270136752	6.44417700636902	6.01970961262838	6.33713708996497	6.36115445655664	6.42638186970994	6.23770602546351	6.20728332302282	0.0350007198270233	0.878528755711283	0.95459719270877
Merged-chr1-14577121-4	chr1	14577026	14577226	+	983.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	178840.0	NM_001360810	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	5.00705696588364	5.00939345376311	5.0078947632846	4.99848122397833	4.87128352068988	5.07647098800857	5.01660265051833	4.86228911429182	-0.0999351306456605	0.747029308071937	0.900364040151928
Merged-chr2-30246007-4	chr2	30245881	30246081	+	874.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177725, intron 2 of 3)	intron (NM_177725, intron 2 of 3)	8212.0	NM_177725	241296.0	Mm.389232	NM_177725	ENSMUSG00000007476	Lrrc8a	Lrrc8|mKIAA1437	leucine rich repeat containing 8A	protein-coding	3.9713504732687	3.81106678551433	3.82873492547918	3.83049752338296	4.01386260239386	3.66433198381338	3.59615051171378	3.96950706323167	-0.0748322907385682	0.87100034197921	0.951515750732959
Merged-chr8-61921211-4	chr8	61921110	61921310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6877.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	5.23946982545585	5.06010874942243	5.33231753339665	5.58848144067304	5.5837842305161	5.17464233816805	5.33485735173871	5.23676423524864	0.0299554755359269	0.923730347474499	0.971863340184091
Merged-chr7-100992151-4	chr7	100992039	100992239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19859.0	NM_001302347	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	6.96205149489435	7.10433037105582	6.66451262392051	6.559553056481	6.80549603267951	6.7944913047988	6.35898079099805	6.42456610062042	-0.309888082978758	0.200759165134867	0.502930308662197
Merged-chr10-121571707-4	chr10	121571608	121571808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019786, intron 5 of 20)	intron (NM_019786, intron 5 of 20)	15086.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	6.252193813985	6.76066441720417	6.29513011040362	6.47709844279713	6.97917417162211	7.11778836008481	6.97839505023189	6.88680295187104	0.741102511546373	0.000647128585977731	0.00947582094657661
Merged-chr18-52614201-3	chr18	52614111	52614311	+	641.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1704.0	NM_025749	66758.0	Mm.251599	NM_025749	ENSMUSG00000046886	Zfp474	4933409D10Rik|Znf474	zinc finger protein 474	protein-coding	3.50375169832975	3.49042160620228	3.72480469053454	3.8616618018411	3.6503252398594	3.73620162726835	3.60517678480714	3.91041488923728	0.182944547849438	0.707626896146135	0.882529695648857
Merged-chr6-97797747-3	chr6	97797647	97797847	+	938.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9311.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	4.19847610082014	3.62938607739648	4.15732140286347	4.19196758338423	3.61137220567209	3.88294278821394	4.05115707356609	4.11145025502342	-0.390611495350054	0.413472831596321	0.70843662422537
Merged-chr5-139404099-4	chr5	139404048	139404248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-2239.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	5.96358975826066	6.16588494155179	7.04959063957018	7.02244746442407	5.84336964915708	5.78986141518693	5.98117804895807	6.40498845116975	-0.926895396693929	0.00485222543946622	0.0464840584866441
Merged-chr6-71446421-7	chr6	71446324	71446524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5787.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	5.19996007125424	5.65789457348094	5.60127185363657	5.02863822563364	5.39957197695875	5.67223328413552	5.38960773927363	5.05557806933995	0.0139139552226486	0.966243912268592	0.988061043386973
Merged-chr19-38396038-4	chr19	38395938	38396138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175507)	promoter-TSS (NM_175507)	58.0	NM_175507	240660.0	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding	5.66968471250286	5.97175367056342	5.44787929358169	5.88395062368703	5.89501648848107	5.53015709117372	5.64212867524484	5.61432899683793	-0.136728823657276	0.624028636092839	0.839263870337153
Merged-chr7-83878359-4	chr7	83878246	83878446	+	931.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5995.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	5.05009223875604	4.41435134804974	4.34206422640024	4.92346060441699	4.73350496437765	4.47222359893012	4.62920529067661	4.68649638592219	-0.190911585528614	0.62483433403343	0.839659374707287
Merged-chr2-73386691-4	chr2	73386600	73386800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190297)	promoter-TSS (NM_001190297)	-220.0	NM_001276444	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	9.48735096859472	9.54350311833574	9.35425209256021	9.45405428908402	9.45724906579618	9.69701837516433	9.59926719778453	9.40683224170594	0.100318419194498	0.482460696526411	0.757239458339229
Merged-chr9-109056646-6	chr9	109056663	109056863	+	875.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026381, exon 4 of 4)	3' UTR (NM_026381, exon 4 of 4)	1897.0	NM_026381	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	3.07733646858522	3.01336790981422	3.07775931379895	2.81507294820622	2.97047770603217	2.93950927866623	2.82394497871396	2.9594369156629	-0.282481152292966	0.638057886947036	0.847040716325261
Merged-chr5-3543829-4	chr5	3543744	3543944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042501)	promoter-TSS (NM_001042501)	11.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	7.49601688408679	7.4942070127448	7.42161273375381	7.5498416572881	7.38879311804849	7.30392877357627	7.54855590523752	7.38689491832457	-0.11306582599258	0.512852866894393	0.776017039843318
Merged-chr19-10905488-4	chr19	10905387	10905587	+	939.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001253844, exon 14 of 14)	3' UTR (NM_001253844, exon 14 of 14)	6842.0	NM_001253844	28000.0	Mm.491104	NM_134129	ENSMUSG00000024735	Prpf19	AA617263|AL024362|D19Wsu55e|NMP200|PSO4|Prp19|Snev	pre-mRNA processing factor 19	protein-coding	4.47342199258471	4.12991548371051	4.62275951812805	4.43674588825482	4.44319652635206	3.87844544535954	4.37266708834327	4.47122521983117	-0.250634221037101	0.550235229022082	0.798491169372725
Merged-chr14-66872771-4	chr14	66872678	66872878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3928.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	7.12828385250182	7.07309134596064	7.12952193609619	7.42399373935625	6.97416704825635	6.72156663464006	7.10503760902929	7.02949046241467	-0.330696721722159	0.104418280555721	0.355318457252617
Merged-chr7-34448548-4	chr7	34448442	34448642	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58837.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	6.51049254457031	5.97443661977515	6.08511875541907	6.45423895251743	6.08710306607019	5.47997305685218	5.68009494039857	5.73196053464028	-0.788417785198041	0.00545542845434575	0.0506372186965976
Merged-chr13-45266872-4	chr13	45266776	45266976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122866.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	6.43436514067592	6.24814448954428	6.03696663816696	6.45946015156587	6.383852898118	5.86007804974356	5.89011758439098	6.39797472989743	-0.218566156571508	0.405515344663272	0.702341680428793
Merged-chr14-61676106-4	chr14	61676012	61676212	+	917.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	6261.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	4.96001520166376	4.70495197828131	4.26644033295386	4.45476411069228	5.05614053103992	4.59836449194582	4.69597958493696	4.92555722406764	0.472328054497918	0.212047232733348	0.516872762448566
Merged-chr4-45530861-4	chr4	45530765	45530965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033306)	promoter-TSS (NM_001033306)	-37.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	7.71658299745371	7.54920336491767	7.70953783376131	7.93605017314312	8.00060670803819	8.11583748437102	8.01944155402527	7.98089575895822	0.367726844724829	0.0326349835245604	0.176998284996547
Merged-chr16-70353136-5	chr16	70352979	70353179	+	852.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 1 of 15)	(GA)n|Simple_repeat|Simple_repeat	39130.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	2.92179841424128	2.84118590644746	3.41385910393115	2.72194250091136	3.19161268854054	3.48002325000151	3.29283694789566	3.55687525253045	1.49186154543596	0.0164185225720279	0.111927475746378
Merged-chr7-132804185-4	chr7	132804087	132804287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	9009.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	7.02833023441253	7.07428808364837	7.05380425617303	7.30088068900217	6.89961490561381	6.79088918950002	7.23709773666987	6.72161707948297	-0.275695299186293	0.190926054226836	0.490311892807621
Merged-chr19-32715357-4	chr19	32715272	32715472	+	953.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-3074.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	5.24884677447702	5.32217645954504	5.2791012586352	5.11879910815024	5.26167184358368	5.23236494276641	4.92611033440258	4.78681886348355	-0.30369234079861	0.336891055647532	0.646769375674115
Merged-chr16-33933474-4	chr16	33933366	33933566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	33572.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	6.3597332028081	6.02565365502182	6.32648894765181	6.555794622721	5.81776351495327	6.02248131045117	6.25884826457612	5.78785054755219	-0.554951253398397	0.0321384336527881	0.175253318698522
Merged-chr8-24725857-3	chr8	24725742	24725942	+	900.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009619)	promoter-TSS (NM_009619)	10.0	NM_009619	11497.0	Mm.5168	NM_009619	ENSMUSG00000031553	Adam3	Cyrn1|Taz83|tMDC	a disintegrin and metallopeptidase domain 3 (cyritestin)	protein-coding	3.25871477479152	3.37800304238866	3.69885267720134	3.5259471595932	3.12469862064679	3.03848466670189	3.1263613081232	3.0009867038648	-1.55687440944734	0.00779355616082375	0.0659538145251782
Merged-chr12-33316637-4	chr12	33316520	33316720	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	14105.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	4.92707234175362	5.14335457293366	5.07023687330551	5.08786070272335	5.32263629623517	4.72136343337238	5.39330169718694	5.16390280983482	0.229251535529965	0.479632788026608	0.755338338398732
Merged-chr10-93090433-4	chr10	93090343	93090543	+	953.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8847.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	4.63143269144291	4.19586148073872	4.67100539456448	4.40145529497664	4.7861759458741	4.80508088330315	4.64892188739243	4.84571850983923	0.642570715775741	0.0720672745982998	0.288483044467589
Merged-chr1-64374874-4	chr1	64374783	64374983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157921.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	8.42235966874353	8.49253575670044	8.67821569907714	8.4186217958113	8.53500222011767	8.69230084962259	8.50866027755821	8.37571541195194	0.0352711290251311	0.823859674407768	0.932436369940542
Merged-chr10-59265329-4	chr10	59265240	59265440	+	915.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43418.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	4.62989566078936	4.62845329112559	4.50781505996842	4.77095039928131	4.84747136238557	4.59450972352299	4.56992386271987	4.41620964325197	-0.0433621791304974	0.904364154516554	0.964559678221358
Merged-chr2-30828358-4	chr2	30828258	30828458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133346)	promoter-TSS (NM_133346)	-58.0	NM_133346	72323.0	Mm.27656	NM_133346	ENSMUSG00000039483	Asb6	2510004M11Rik|AA409356	ankyrin repeat and SOCS box-containing 6	protein-coding	7.2750502120136	7.29465776680493	6.20427951170024	6.88402474711383	7.27925747066818	7.30201048253318	7.04268077160642	7.17622621527736	0.302050651668702	0.251770697465254	0.563040416191876
Merged-chr1-43321662-4	chr1	43321567	43321767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124084.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	7.30158982614296	7.40261163196024	7.58346520858067	7.56589788877395	7.52003345941067	7.62340955037423	7.80996686883408	7.24235319850106	0.12137966852546	0.535770909004629	0.789917509673982
Merged-chr8-72485650-2	chr8	72485560	72485760	+	861.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177766, intron 4 of 5)	B4A|SINE|B4	6954.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	2.88895676047812	2.87121968101285	2.96274146797228	2.49205063206308	3.31937282131389	3.40082475006643	3.6520284691501	3.53595295705585	2.94432473881029	3.95581411021001e-06	0.000120587106017404
Merged-chr6-29794764-4	chr6	29794685	29794885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	26342.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	7.53724846607671	7.64242327250199	7.21708020645344	7.54046331062186	7.11151475276949	7.17718937531229	7.0528397725738	6.85492235206061	-0.598624809567146	0.0021115307335716	0.0243829730832078
Merged-chr2-52966426-4	chr2	52966300	52966500	+	929.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	108532.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	4.77700911214607	4.97804161842635	4.54272290530821	4.79730444031343	4.65406500418672	4.48821726409687	4.52228164664899	4.70107110897626	-0.404725014271578	0.249876629374504	0.560979626329492
Merged-chr4-83309082-4	chr4	83308985	83309185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	MTC|LTR|ERVL-MaLR	15104.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	7.70271926354435	7.89460576373906	8.18464282882235	7.84167263267975	7.76379880363843	7.78598665382709	7.86661419231408	7.80310276118964	-0.143419239370929	0.416105291129583	0.710072021761014
Merged-chr6-54954425-3	chr6	54954337	54954537	+	902.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	RLTR11A2|LTR|ERVK	17224.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	2.58374867966132	2.58752143043849	2.50021066361117	2.17569634427109	3.46133257091744	3.24029044889852	3.05074287994443	3.2254589095155	5.05243542683072	9.05582125708764e-09	4.83559115722611e-07
Merged-chr4-132808285-4	chr4	132808204	132808404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11940.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	6.55470012319029	6.5028262734274	6.03592817812392	6.48917667504115	6.51547708806904	6.76230095985632	6.29944209402667	6.59761633031005	0.194944217972244	0.409388974819046	0.704986157609834
Merged-chr3-137941872-3	chr3	137941771	137941971	+	878.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	23316.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	3.18958692360198	3.31036171253574	3.18999884357708	3.15349078079832	3.30626128335616	3.41465050144248	2.92560771807097	2.93262796230579	-0.168582284955794	0.7744986630368	0.911870322392576
Merged-chr3-94975222-4	chr3	94975127	94975327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293716, intron 1 of 9)	intron (NM_001293716, intron 1 of 9)	496.0	NM_001293716	107650.0	Mm.217222	NM_175356	ENSMUSG00000038861	Pi4kb	ESTM41|PI4K-beta|PI4Kbeta|Pik4cb	phosphatidylinositol 4-kinase beta	protein-coding	5.00588230460035	5.05879554048639	4.90100753918743	4.64045755922672	4.9906759413262	4.96247251801157	5.07913041764869	5.19122371311178	0.320838636560886	0.323843008795216	0.635358917393458
Merged-chr15-8995001-5	chr15	8994842	8995042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198024, intron 1 of 13)	intron (NM_198024, intron 1 of 13)	26993.0	NM_198024	223332.0	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	4.7974375567021	4.75109865933972	4.75987503660176	5.17041851450477	4.8651107751013	4.93382135911765	4.61652311804531	4.93764242022597	-0.119520571335934	0.731130655963202	0.893446298186013
Merged-chr10-24142960-4	chr10	24142876	24143076	+	938.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6313.0	NM_001358563	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	4.73409808842338	4.4588689922317	4.77026042264898	4.62804352994339	4.87206460755108	4.16559939195394	4.56138783760582	4.65792329919797	-0.101116849344007	0.792610005998472	0.919627897475503
Merged-chr13-113580079-4	chr13	113579982	113580182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38482.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	5.54877321846381	5.77236578603644	5.84213448270207	6.14775074533411	6.27178305219334	5.63710450217812	5.88130295302951	5.9728841660161	0.173940083734934	0.545788170873987	0.795983499079244
Merged-chr12-110889196-4	chr12	110889104	110889304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027223)	promoter-TSS (NM_027223)	-59.0	NM_026048	67236.0	Mm.287157	NM_026048	ENSMUSG00000021276	Cinp	1810047K05Rik|2810452K22Rik	cyclin-dependent kinase 2 interacting protein	protein-coding	7.66157183421332	7.81043007592557	7.14962294574676	7.43943631191902	7.67494424895945	7.76350443519104	7.68953199555142	7.49947723198513	0.160503203017341	0.425755147615826	0.717175323137817
Merged-chr4-147125070-4	chr4	147124971	147125171	+	995.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-50795.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	5.11552664171649	4.82044541909521	5.6365399950409	5.12686131573651	4.84759794583556	5.4782115943143	5.4154645481505	5.14627691457728	0.0635939711680795	0.857558516872697	0.946359033681887
Merged-chr10-54131890-3	chr10	54131794	54131994	+	875.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55972.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	3.57506480208234	3.64480555218095	3.41271182233581	3.39091773537584	3.512931715359	3.63947589712654	3.28060056179179	3.35187830350841	-0.170732457965092	0.739156217924642	0.897175752194117
Merged-chr18-49979900-1	chr18	49979800	49980000	+	1000.0	f1_balb.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	473.0	NM_001177759	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	4.75996953091614	4.30902057497847	4.37999824819919	4.02680351743049	4.58776624808996	5.02347570118705	4.06624667606835	4.08068320852133	0.250814696625526	0.59430045949822	0.823411261518897
Merged-chr2-52906677-4	chr2	52906607	52906807	+	752.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	48839.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.9378603971585	3.65063215117412	3.68046869991264	4.09045610397669	4.00334624417211	3.96132313026286	3.72189767308953	3.7878052212469	0.029105265300076	0.95059351397499	0.982312550074733
Merged-chr16-5254497-4	chr16	5254386	5254586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027446, intron 1 of 7)	intron (NM_027446, intron 1 of 7)	1470.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	7.59507182887042	7.38445877034889	7.19384927609937	7.66275143221066	7.523947583648	7.70268572301236	7.70461703527126	7.41600518341832	0.144457759932592	0.456226399769665	0.739619617118504
Merged-chr2-45198116-2	chr2	45198016	45198216	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80674.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	3.16017875547763	3.2407176628595	3.03662009102449	2.80517364483455	3.06657447617157	3.27347275998263	3.3126221752701	3.21665667003217	0.613140536987914	0.289142978859518	0.601163318084731
Merged-chr7-123430001-4	chr7	123429898	123430098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355050, intron 6 of 6)	intron (NM_001355050, intron 6 of 6)	22181.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	6.58262152501235	6.42753537024448	6.74605996103012	6.72814275145785	6.38373801013174	6.22146915564487	6.76561174674119	6.57908370538654	-0.186997750044122	0.414921699699965	0.709392742895644
Merged-chr8-14642639-4	chr8	14642541	14642741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-245895.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	5.58740017451144	5.22030568343083	5.58837373317334	5.5440153047307	6.18285904133384	5.76472573350467	5.87344252588357	5.85586379159282	0.736172888076331	0.00655546971347566	0.0579501935349173
Merged-chr17-8283072-4	chr17	8283028	8283228	+	932.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018819)	promoter-TSS (NM_018819)	-685.0	NM_018819	55951.0	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	4.51937608922631	4.28634213032157	5.22735636662442	4.19765090240075	4.52071200106127	4.61105478386309	4.27654562145134	4.34077957576812	-0.383926454940677	0.390655412033668	0.690620708172377
Merged-chr2-94405640-4	chr2	94405539	94405739	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183106, intron 1 of 24)	(CA)n|Simple_repeat|Simple_repeat	1050.0	NM_183106	74569.0	Mm.248504	NM_183106	ENSMUSG00000027194	Ttc17	9130020K17Rik|D2Bwg1005e	tetratricopeptide repeat domain 17	protein-coding	3.8341585834938	3.35784674586123	3.94132300622036	4.12683855045678	4.32202122993861	4.16491643295543	3.92479002604889	4.36917801205853	0.917638380873952	0.0698733408462976	0.28289451230864
Merged-chr7-83814312-4	chr7	83814209	83814409	+	954.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19470.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	4.86048694495908	4.90588770753095	5.58678510648773	5.49361973667557	4.60876052453984	4.95997863016568	4.98468111869221	5.00564759327526	-0.710033384529892	0.0504945616428232	0.233108364151967
Merged-chr12-32893440-4	chr12	32893334	32893534	+	928.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	60355.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	4.90307947694279	4.75018611567534	4.43451132858979	5.04304577169764	5.09999515808252	4.88818534779753	5.37268474121111	4.82695062339083	0.490088248803404	0.174872023239241	0.469511362911469
Merged-chr13-51651740-4	chr13	51651642	51651842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029279)	promoter-TSS (NM_029279)	34.0	NM_029279	75420.0	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	7.27130654727102	7.5497571931103	7.23922088771752	7.04578898932123	7.56910547738229	7.78428161274843	7.39992658904155	7.602141484766	0.416588769471496	0.0359430832602466	0.188358992833826
Merged-chr4-134765249-4	chr4	134765142	134765342	+	972.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	B1_Mus2|SINE|Alu	2762.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	4.92634848918203	5.22341026105975	4.68592839138194	4.84592834916653	5.25009602183376	5.10220098473342	5.27842976300268	4.92387411065468	0.416577758919132	0.202369943991956	0.504816938301159
Merged-chr18-7870798-3	chr18	7870721	7870921	+	813.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360956, intron 2 of 13)	PB1D7|SINE|Alu	1108.0	NM_001360956	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	3.3514432239416	3.1294029713668	3.29482454550925	3.30817441287242	3.19167954164228	3.21803823962774	3.39270035196478	3.64668262078888	0.349013993231599	0.518806260377704	0.779745431679921
Merged-chr13-13666347-4	chr13	13666223	13666423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010748, intron 18 of 52)	intron (NM_010748, intron 18 of 52)	75914.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	5.91564808809589	5.92739942793663	6.29026182319761	5.66725629980869	5.84373194973438	5.46183572008715	5.59535445404405	5.59200662417705	-0.513897586644498	0.0711347740464898	0.286078427134589
Merged-chr11-89023605-3	chr11	89023503	89023703	+	991.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24200.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	3.72209855608107	3.70487764165383	3.78489648798493	3.9019631735912	4.40787284699069	4.53860297980781	4.22577433887871	4.61324196586114	1.66952606244507	0.00010364023853812	0.0020915816668287
Merged-chr19-3324138-4	chr19	3324031	3324231	+	978.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 1 of 18)	CpG	830.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	4.90031948931519	5.03939801991052	4.82952465500601	4.50767463494563	4.9751553116001	4.76500548017392	4.97693597955388	4.75054202928833	0.119552860777815	0.731692724700638	0.893744211752728
Merged-chr10-91083538-1	chr10	91083438	91083638	+	1000.0	f0_balb.idr	promoter-TSS (NM_009684)	promoter-TSS (NM_009684)	499.0	NM_026166	67454.0	Mm.252843	NM_026166	ENSMUSG00000019975	Ikbip	1200009F10Rik|1700023M03Rik|D18354|Ikip	IKBKB interacting protein	protein-coding	3.98648991479731	3.9551696925199	4.08039806600432	4.25518943318948	3.84355653266036	4.00729500941537	3.87083911957533	3.984721020942	-0.445386601881737	0.300720784598342	0.612615171792683
Merged-chr8-86585296-1	chr8	86585196	86585396	+	585.0	f0_c57.idr	Intergenic	Intergenic	-18706.0	NM_172912	244562.0	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding	3.76066647117625	3.3919618572069	2.98354087176977	3.04857876186202	3.55795734477012	3.30657210638988	3.46808442587415	3.2546402757068	0.257741461847492	0.667740072244247	0.862643530542012
Merged-chr6-42266146-4	chr6	42266032	42266232	+	873.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007610, intron 1 of 10)	intron (NM_007610, intron 1 of 10)	1147.0	NM_007610	12366.0	Mm.3921	NM_007610	ENSMUSG00000029863	Casp2	CASP-2|ICH-1|NEDD-2|Nedd2	caspase 2	protein-coding	4.16837103946629	4.24079939485256	4.34972422872814	4.69557265303333	4.03183065700414	4.52024541877181	3.99883836577039	4.25989065086263	-0.445959236255936	0.3012060629942	0.613206714465697
Merged-chr12-111037786-7	chr12	111037635	111037835	+	900.464294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2063.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	3.4664682348922	3.34048349058547	3.40914040548527	3.35563684649822	3.22237409877151	3.84345716977076	3.33657498304247	3.80947605112535	0.607587860447999	0.25837786591658	0.570279197550257
Merged-chr1-132417454-4	chr1	132417357	132417557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172516)	promoter-TSS (NM_172516)	4.0	NM_172516	213452.0	Mm.257120	NM_172516	ENSMUSG00000042046	Dstyk	A930019K20Rik|C430014H23Rik|C820013G01|Ripk5	dual serine/threonine and tyrosine protein kinase	protein-coding	7.34978784565586	7.64197966064887	7.63987928865025	7.77433308932256	7.35766873480469	7.29994975540255	7.8013149426598	7.35637553362424	-0.196238818728712	0.332079313108908	0.643114462430911
Merged-chr6-134211458-3	chr6	134211348	134211548	+	961.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	175748.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	3.43391025252507	3.10074964264915	3.58163626209163	3.71535016950512	2.84961767785816	2.96631267180404	3.06762897600638	3.53223756806762	-1.30072509472909	0.046752752893766	0.22232858085418
Merged-chr6-114742409-4	chr6	114742308	114742508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 18 of 19)	intron (NM_001253718, intron 18 of 19)	99311.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	5.85267443675811	6.01373811211317	5.77910047484625	5.98414195512304	6.00157617534757	5.67441291535368	6.23041684390091	6.25806605052255	0.227384608174874	0.378016385461706	0.680636285273186
Merged-chr11-103217871-4	chr11	103217753	103217953	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177801, intron 1 of 4)	(CACCG)n|Simple_repeat|Simple_repeat	579.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	4.65631681085487	4.88667471770037	4.25848033102606	4.60765849875181	4.63101428363414	4.58172364610372	4.33934883944188	4.83115351768696	-0.0340048234455764	0.929025462624368	0.974317157505369
Merged-chr13-43795684-4	chr13	43795610	43795810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	10598.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	5.77572032908809	5.59616505335943	6.02769195967134	6.03543003909076	5.86404346597019	5.40304339397866	6.22191286067389	6.31670449395361	0.193354354694574	0.521834179601967	0.781691501355061
Merged-chr15-102451099-4	chr15	102450995	102451195	+	957.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356575, intron 7 of 11)	intron (NM_001356575, intron 7 of 11)	5728.0	NM_144547	110542.0	Mm.60331	NM_144547	ENSMUSG00000023047	Amhr2	Misiir|Misrii|Mrii	anti-Mullerian hormone type 2 receptor	protein-coding	5.39075287444777	5.42537851848682	5.1262453933908	5.35041220315419	5.03326269959477	5.19931397308889	4.92709603015731	4.7444966823864	-0.650142923554746	0.0368986713870449	0.191354230031214
Merged-chr7-67222539-4	chr7	67222440	67222640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175215)	promoter-TSS (NM_175215)	-4.0	NR_131043	76628.0	Mm.384589	NR_131043	ENSMUSG00000097527	1700112J16Rik	-	RIKEN cDNA 1700112J16 gene	ncRNA	7.632812618685	7.72819766524044	7.24742273821797	7.47299884157926	7.62456266063145	7.86152681297422	7.94982591848552	7.59429520713139	0.302912189527769	0.117161889344152	0.378643810744651
Merged-chr5-105356583-4	chr5	105356481	105356681	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10105.0	NR_132129	634650.0	Mm.458435	NM_001039647	ENSMUSG00000092021	Gbp11	EG634650|Gm7141	guanylate binding protein 11	protein-coding	5.50866918152541	5.83059683678397	5.7875586323012	5.05837970619232	5.75752375444474	5.68545245919103	5.30148868358435	5.73727860641292	0.116484359157357	0.716278383461121	0.886539133985621
Merged-chr4-119005142-4	chr4	119005013	119005213	+	834.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43146.0	NM_133892	100470.0	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	3.81699494338585	4.01752177098096	4.06730192049488	3.65952092594603	4.20651857738611	3.93862181335365	3.95619474343405	4.15234120219555	0.50994169345793	0.246343082148172	0.55762669839908
Merged-chr7-16229966-4	chr7	16229899	16230099	+	888.36908	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7967.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	3.32598323169191	3.15184886994117	3.21991709776034	3.19388724417814	2.96628132215877	3.15065726643303	3.03130366329661	3.10210617769983	-0.653538511573196	0.245177771512909	0.556267038796901
Merged-chr7-66689127-2	chr7	66689027	66689227	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001191001)	promoter-TSS (NM_001191001)	434.0	NM_080443	117589.0	Mm.34785	NM_080443	ENSMUSG00000030509	Asb7	AI449039|Asb-7|D030055C23Rik	ankyrin repeat and SOCS box-containing 7	protein-coding	3.15877201553602	3.33669999989168	3.27474506671707	3.14160845463912	3.18665248921611	3.20670609359011	3.0873002033581	3.32685419733651	-0.0851144755982707	0.875490926747016	0.953217111662346
Merged-chr17-57276946-4	chr17	57276785	57276985	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2215.0	NM_001163816	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	4.66554207964652	5.00754128945625	4.85827252004838	4.96942421198153	4.98325692311218	4.84141272515015	4.64497784075228	4.66330064561517	-0.184779724770992	0.586887904743496	0.818955364185483
Merged-chr9-32590082-4	chr9	32589982	32590182	+	898.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48630.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	4.08963866776988	4.16589273819824	3.82100303571066	4.14121927559745	4.14006666056205	4.52141200457554	4.07280307061346	4.31046411665094	0.497474343160602	0.235414048649568	0.545420732133053
Merged-chr6-88075259-4	chr6	88075169	88075369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9204.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	7.65214236626485	7.85452274307707	7.46184069996287	7.75420217351949	7.57265013714152	7.62949912697246	7.75927056882201	7.77666482675815	-0.0132243417612012	0.940706067261187	0.978654793543509
Merged-chr11-94486208-4	chr11	94486116	94486316	+	855.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144827)	promoter-TSS (NM_144827)	-906.0	NM_144827	217116.0	Mm.156123	NM_144827	ENSMUSG00000020867	Spata20	Tisp78	spermatogenesis associated 20	protein-coding	4.07714391639182	4.17890885628023	3.92661052436389	4.04311773385749	3.50646144816405	4.46473727191213	4.23531176591423	4.07525682985619	0.133401950556771	0.783534830434746	0.915678422767741
Merged-chr19-5912216-4	chr19	5912186	5912386	+	837.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011262, intron 1 of 10)	CpG	585.0	NM_011262	19708.0	Mm.2651	NM_011262	ENSMUSG00000024826	Dpf2	2210010M07Rik|BAF45D|Req|ubi-d4	D4, zinc and double PHD fingers family 2	protein-coding	3.81366170963934	3.87563022195979	3.70784837866677	3.69540877165941	3.67319543041182	3.98581362814086	3.63747708513991	4.12640797087325	0.274250118172728	0.555085132324665	0.80121730233361
Merged-chr19-16107890-3	chr19	16107798	16107998	+	761.527771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24933.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	3.5097146054038	3.27150479245008	3.24489575224722	3.06362218419725	4.13034170943894	4.13483826721476	3.85914937490631	3.73006443194838	2.29089874847449	5.05744365940718e-06	0.000149370863997072
Merged-chr8-122567722-4	chr8	122567622	122567822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026014)	promoter-TSS (NM_026014)	-293.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	7.60578381899142	7.9154236595519	7.99642110095548	7.7106482869677	7.83175951254583	8.10544571184161	7.60513428973369	7.71290150547368	0.016410111545584	0.931747364015629	0.97535206477795
Merged-chr19-3719605-4	chr19	3719562	3719762	+	983.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11251.0	NM_001358257	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	4.61209305719727	4.43902761367441	3.93602812076166	4.34684378110977	4.37346866907382	4.42391237679127	4.27708317884692	4.29341459722355	-0.0295479419311777	0.941648971138297	0.978976588280915
Merged-chr11-20403687-4	chr11	20403581	20403781	+	976.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-70968.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	4.3829409398959	3.794075350767	4.42536945503795	4.33923177769193	4.28622905121019	4.17287686241533	4.55764484467594	4.74601466581531	0.466241030875019	0.281587897658622	0.593701988722515
Merged-chr9-58253155-4	chr9	58253053	58253253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026942)	promoter-TSS (NM_026942)	-11.0	NR_028146	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	7.28564216126665	7.53627463562709	7.18588123678935	7.18795463937987	7.58124180307395	7.57735907931331	7.7489243986435	7.13323251857221	0.302082075785039	0.143528181688263	0.421895207284282
Merged-chr8-122548042-4	chr8	122547979	122548179	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037298, intron 1 of 50)	intron (NM_001037298, intron 1 of 50)	3250.0	NM_001037298	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	4.90467558960512	4.74962461521414	4.9731266480394	4.72937137733812	5.00968454840919	4.89371493204189	4.61483605974965	4.93641589168959	0.0930868857155661	0.780009381082862	0.914273965875713
Merged-chr19-5878159-2	chr19	5878059	5878259	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134154, exon 1 of 6)	5' UTR (NM_134154, exon 1 of 6)	337.0	NM_001361974	107375.0	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	5.62008642511857	5.43174277466871	5.14040957068829	4.30519147654373	5.0492420388693	5.40855120709125	5.01425234647216	4.9256847151525	-0.18342672529171	0.657638720794257	0.857424585511082
Merged-chr12-79797236-4	chr12	79797129	79797329	+	783.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 9 of 10)	intron (NM_009014, intron 9 of 10)	127504.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	4.29653628683001	3.82446959822009	4.25567799799217	4.18641353503925	4.00181439717101	3.92686710379876	4.23626585613135	4.33459763554974	-0.04852568234449	0.910265806346567	0.966671146059764
Merged-chr18-82774517-3	chr18	82774433	82774633	+	828.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15494.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	2.95507823353839	2.99536096288548	3.21091240317039	3.34650311992535	3.17967430009114	3.3801497010232	3.30856819453495	3.26591585183854	0.494242961154398	0.388573066618049	0.688981838974675
Merged-chr10-79927423-4	chr10	79927402	79927602	+	933.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001288625, intron 1 of 8)	CpG	161.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	4.37561469821557	4.2700391054873	4.18833600596316	4.07479377982813	4.48742755051291	4.46131042648418	4.48015769586929	4.84247264379737	0.831777824311957	0.0283577733755397	0.16137966787628
Merged-chr16-82761624-3	chr16	82761539	82761739	+	687.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1560942.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	3.32459077635277	3.35419872425873	3.48660350510564	3.50776067772099	3.34609708382253	3.31523254106913	3.19432804612432	3.3233035666092	-0.458598800268021	0.379815613338206	0.682282195090949
Merged-chr2-144300286-4	chr2	144300199	144300399	+	826.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	29395.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	4.11264330070049	3.6883429804136	3.88207980689044	3.89853775393996	3.89933356231133	3.71843513073114	4.00801043452104	4.11066359118798	0.114461696433989	0.798181064451535	0.921955533143952
Merged-chr12-73611009-4	chr12	73610893	73611093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	26197.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	6.48537166504739	6.68518098036609	6.25856161799241	6.11173247287791	6.27726209106341	6.2935499588045	6.43723326052384	5.95180255212766	-0.213488771618996	0.401196942660768	0.698869974053897
Merged-chr8-3221882-4	chr8	3221778	3221978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330056, intron 2 of 21)	intron (NM_001330056, intron 2 of 21)	57739.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	5.90516005929661	5.5398961122271	5.78851984044278	6.26136160325614	5.95575029990399	5.8085638403408	5.85356822549863	5.85626953654552	-0.0786801843238741	0.77873175112593	0.913781420202775
Merged-chr15-8446062-4	chr15	8445965	8446165	+	876.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1602.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	4.19241932367163	4.01636875918602	4.01096351335293	3.73758608470275	4.13685237528543	4.03191254668249	3.84006491445222	4.31139615340532	0.286387306679133	0.516190105255189	0.778006346996534
Merged-chr18-60500096-4	chr18	60499993	60500193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134133, intron 1 of 1)	intron (NM_134133, intron 1 of 1)	1890.0	NM_134133	106878.0	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	7.90211462001592	7.94198483640065	7.943516626455	7.5673688035221	7.01444171438458	7.63747534765255	7.41312437248874	7.0598963851122	-0.71853425921294	0.000824972538044122	0.01152742840311
Merged-chr5-142912987-4	chr5	142912854	142913054	+	734.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6200.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	3.56872140687384	3.66291937618554	3.32792651386097	3.55416796341601	3.7820888440678	3.74020584315959	3.60866700443065	3.67284155788445	0.523857725682299	0.273264980004547	0.58484358685861
Merged-chr13-104285111-4	chr13	104285003	104285203	+	912.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2732.0	NR_136938	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	4.26787187012683	4.36996120382421	4.48888235099191	4.37582753091869	4.49253924121286	4.53442716736104	4.50770625856178	4.52580464431201	0.31377100154351	0.383428549903929	0.685330303789723
Merged-chr10-121689774-3	chr10	121689665	121689865	+	904.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177335, intron 11 of 12)	intron (NM_177335, intron 11 of 12)	48064.0	NM_177335	216393.0	Mm.119759	NM_177335	ENSMUSG00000047642	D930020B18Rik	1500017I17Rik	RIKEN cDNA D930020B18 gene	protein-coding	4.1241168542274	4.27300887851705	4.12474232766213	4.04491864532736	3.93819063254745	3.88437677926634	4.01453243769642	4.12221262470646	-0.397020213787375	0.341607609169598	0.650639445837748
Merged-chr12-85688070-3	chr12	85687972	85688172	+	745.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 1 of 2)	intron (NM_016767, intron 1 of 2)	1352.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	3.63439045952576	3.44358475955867	3.15602248176782	3.07415481268574	3.46098639821397	3.7550326125352	3.71451658773576	3.63271963639382	1.01795437797679	0.057197997003008	0.250673677544652
Merged-chr4-9631826-4	chr4	9631718	9631918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177856, intron 4 of 4)	intron (NM_001177856, intron 4 of 4)	11899.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	7.3365454563642	7.6492735618827	7.30546799729601	7.69798602720345	7.79743489369745	7.64635932413269	7.58489150416291	7.44459664732663	0.142789691447632	0.460899514116915	0.742813687656015
Merged-chr8-123043490-4	chr8	123043402	123043602	+	961.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045268, exon 1 of 1)	non-coding (NR_045268, exon 1 of 1)	927.0	NR_045268	100503178.0	Mm.294938	NR_045268	ENSMUSG00000099881	2810013P06Rik	-	RIKEN cDNA 2810013P06 gene	ncRNA	4.34817160683891	4.29663320834718	4.0366432121762	3.96478156543723	4.3291480034289	4.10866147554141	3.86095436585552	4.2644944117947	-0.00671610885653413	0.98754350554771	0.995315979319888
Merged-chr10-98914415-4	chr10	98914288	98914488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026482)	promoter-TSS (NM_026482)	-254.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	9.13101710520329	9.08895091657286	9.10278650498782	8.9016597966629	9.30909169298583	9.44626341291309	9.41129288610125	8.96007333042711	0.295694454333193	0.0714446601104606	0.286919400925439
Merged-chr3-63963892-3	chr3	63963790	63963990	+	891.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_015728, exon 1 of 6)	exon (NM_015728, exon 1 of 6)	843.0	NM_001272035	11416.0	Mm.135619	NM_015728	ENSMUSG00000027822	Slc33a1	AI315656|AI788741|Acatn|D630022N01Rik	solute carrier family 33 (acetyl-CoA transporter), member 1	protein-coding	3.47156299880849	3.29483379581468	3.62303864004044	3.49822373872707	3.10752425048274	3.21547493874997	3.4579808738975	3.57253449494067	-0.450764985794788	0.406851222742001	0.703270270133393
Merged-chr11-45851944-4	chr11	45851883	45852083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346760)	promoter-TSS (NM_001346760)	19.0	NM_001045520	216705.0	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	6.3917063503927	6.60757169059731	6.30060902158933	6.50786092830156	6.51175982100664	6.29357832459443	6.61539387085245	6.23741400421965	-0.0502781044751003	0.823229042548484	0.932235904600333
Merged-chr1-37605879-4	chr1	37605774	37605974	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-64858.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	5.21488810045286	4.80884008238714	4.86510170552176	5.11016883566201	4.87397277791276	4.45898706713367	4.97980173671316	4.96746962437403	-0.346693782621569	0.316997898332631	0.628905690750891
Merged-chr19-10693174-4	chr19	10693072	10693272	+	926.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	L1MB3|LINE|L1	4437.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	4.64576137271736	4.79305602547963	4.03751977917309	4.36816861678738	4.52860879988806	5.02123044729013	4.50789212229969	4.20221023485912	0.232863407042557	0.591289918714323	0.821525680896513
Merged-chr11-110993802-4	chr11	110993712	110993912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252207, intron 2 of 2)	intron (NM_001252207, intron 2 of 2)	-3675.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	6.85309090925229	6.84370913798775	7.41636456010871	7.39755667793147	7.43778281114547	7.07607697517961	7.57093754743987	7.38259828247915	0.291361832992791	0.204486418107181	0.507782437802491
Merged-chr3-22024386-4	chr3	22024275	22024475	+	926.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52277.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.03953395904419	4.47679233571742	4.27055229441594	4.39246790036104	4.20749530997442	4.11216712759746	3.6185202242731	4.13479813940431	-0.67823029026593	0.132779272911938	0.405765750755573
Merged-chr5-90977460-4	chr5	90977369	90977569	+	857.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026788, intron 6 of 7)	intron (NM_026788, intron 6 of 7)	46273.0	NM_026788	665563.0	Mm.153030	NM_026788	ENSMUSG00000029376	Mthfd2l	1110019K23Rik|C630010D07Rik	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	protein-coding	4.0709012985387	4.45822001105336	4.11907463241147	4.39558797296176	4.14603648093458	3.79905478821846	4.23268651941197	3.80163421999706	-0.676236832164835	0.128373469256795	0.398634288815522
Merged-chr1-161492253-3	chr1	161492147	161492347	+	991.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2410.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	4.09672676051328	3.93147170785615	4.91622537140174	4.8367603720069	4.04608376153147	3.67669526780585	3.68030642081273	4.19094832795776	-1.4956306951574	0.00483002547271194	0.0463462366031495
Merged-chr2-132285016-4	chr2	132284825	132285025	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	-1014.0	NM_001291039	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	3.61508256417582	3.64433321205322	4.14909956723531	4.22500776295957	3.7512916804008	3.73330037542024	3.82022014288792	3.83385648100209	-0.473367086324148	0.334528702748271	0.645068635248264
Merged-chr5-144014901-4	chr5	144014801	144015001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177682)	promoter-TSS (NM_177682)	-48.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	6.75607243891357	6.6766943058963	6.35265177514492	6.80125946893578	6.86386634697019	6.71470682243085	7.00448841271472	6.97621936092492	0.319498032351195	0.134049865093774	0.407670811685954
Merged-chr3-89385244-3	chr3	89385142	89385342	+	862.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009565, intron 1 of 2)	intron (NM_009565, intron 1 of 2)	2429.0	NM_001355212	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	3.53589092607005	3.5037102241439	3.53636571578842	3.46429499281444	3.60205409812746	3.47267287310263	3.52263269486013	3.9140743921431	0.42539523021386	0.382894112394025	0.684806264846199
Merged-chr8-83997820-4	chr8	83997665	83997865	+	872.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081415)	promoter-TSS (NM_001081415)	93.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	3.58865674394771	3.76799571783564	4.22445795693759	3.90851777354154	3.88985492830623	3.76937425355897	4.12585030502126	3.91913157347796	0.110524700250748	0.812911699633482	0.927725539012532
Merged-chr1-157448738-2	chr1	157448692	157448892	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9776.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	3.00286453689792	2.84617952561744	2.87127871671831	2.88941192573442	2.78915215848517	3.29403049741567	2.99227149334892	3.42567621296885	0.979263241844483	0.112397864246108	0.370636903527368
Merged-chr2-32607425-4	chr2	32607327	32607527	+	837.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025310, intron 1 of 5)	intron (NM_001025310, intron 1 of 5)	442.0	NR_110347	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	4.31909406831431	4.21501775148243	4.22802801945247	3.79806271305872	4.3124052263252	4.86751486550209	4.46428493521184	4.22540985569742	0.828184755123677	0.0521192179473756	0.237677345560035
Merged-chr5-103721678-4	chr5	103721556	103721756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32506.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	6.9698983331596	7.2724208735583	7.13999157014265	6.39368849184633	7.19357823011604	7.47523664640727	7.32025495911412	6.46625436127437	0.257947114926984	0.365043527775329	0.669759676062152
Merged-chr9-119093589-4	chr9	119093472	119093672	+	956.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_121571)	promoter-TSS (NR_121571)	-70.0	NM_019676	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	4.73197862301843	4.67793660255	4.69664550995069	4.81086137331102	4.40533027606917	4.49163553721517	4.51988864848683	4.49546861317713	-0.583432395318532	0.0946913819484275	0.336715685452721
Merged-chr17-78895587-4	chr17	78895482	78895682	+	899.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163625, intron 3 of 6)	intron (NM_001163625, intron 3 of 6)	11410.0	NM_001163625	73671.0	Mm.45514	NM_001163625	ENSMUSG00000038045	Sult6b1	2410078J06Rik|AV101767|ST6B1	sulfotransferase family, cytosolic, 6B, member 1	protein-coding	4.57649304707592	4.30818231531555	4.61472549727462	4.80021396783803	4.3305932016649	4.305288265951	4.43733150184403	4.3228934211179	-0.575707435583539	0.13131939665629	0.403434905891411
Merged-chr3-87376335-4	chr3	87376243	87376443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310545)	promoter-TSS (NM_001310545)	-44.0	NM_001310545	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	6.4445430807964	6.02449394514156	5.89768330767223	6.21313822749865	6.46008732183768	6.55316132374327	6.3961671227374	6.32028761311106	0.407124184825861	0.0846002113576956	0.316534821500705
Merged-chr18-36197385-4	chr18	36197266	36197466	+	847.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167891)	promoter-TSS (NM_001167891)	-206.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	3.94637042689194	3.96404578201423	3.66632068641843	4.24769842835806	3.93220874624114	3.84704575777825	4.23932685639965	4.2564803451908	0.238341869896173	0.608685766171838	0.830738047659156
Merged-chr1-180771491-4	chr1	180771396	180771596	+	872.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42109.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	3.94876738269295	4.24725175545577	4.00270737698906	4.0808036349626	4.28371631481916	4.27629512893953	4.22213637080226	4.3625119502204	0.522755804773116	0.18725028428799	0.485530144087094
Merged-chr4-132802420-4	chr4	132802338	132802538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6074.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	6.54655035319588	6.83294627165784	6.62694855760635	6.5089010626051	6.85997014443013	6.72400097813623	6.32106973322351	6.31030149351705	-0.0653354788202189	0.783956801387588	0.915900880852969
Merged-chr14-44078012-4	chr14	44077893	44078093	+	777.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-24661.0	NM_007895	13587.0	Mm.327386	NM_007895	ENSMUSG00000072596	Ear2	EAR-13|EAR-2|ECP|ECP 2|Raf3|Rnase2	eosinophil-associated, ribonuclease A family, member 2	protein-coding	4.33754271118366	3.85772550826322	4.37890244399432	4.63505029411471	3.5796441206928	4.33580108939607	4.14297116632526	4.29346928516774	-0.546735080740356	0.266168675432271	0.577909896854882
Merged-chr15-64072060-3	chr15	64071972	64072172	+	872.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11624.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.26635358584181	3.85520956099608	4.22912367321797	4.1344566714381	3.69752817787577	3.64488363430294	3.69810732684546	3.71021844653839	-1.27339890848952	0.00582206828402796	0.0531293587677982
Merged-chr1-118459112-4	chr1	118459017	118459217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027901, exon 1 of 1)	non-coding (NR_027901, exon 1 of 1)	148.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	6.6886393938989	6.9525171444521	6.56262195515934	6.84042233968454	6.67173067228835	7.02179426102886	6.68548382176299	6.50676501286435	-0.0650409509104079	0.768379270542253	0.909356419531329
Merged-chr12-80213467-4	chr12	80213373	80213573	+	908.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	MIR3|SINE|MIR	46898.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	4.52656977550293	4.47986703122022	4.52727940286228	4.63626733669505	4.76254936024936	4.52538319754353	4.62460924013551	4.56529453276679	0.17306589081163	0.622054152143851	0.838154589422968
Merged-chr5-148959235-2	chr5	148959135	148959335	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8985.0	NR_040686	71473.0	Mm.90306	NR_040686	ENSMUSG00000079069	8430423G03Rik	-	RIKEN cDNA 8430423G03 gene	ncRNA	3.48294936480258	3.05038259290194	3.32988663760053	2.85631135260532	3.24624029512004	3.26877798053018	3.08130026534939	3.38114872539461	0.205560538260704	0.729630789233547	0.89273193260024
Merged-chr3-32529427-4	chr3	32529343	32529543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024200)	promoter-TSS (NM_024200)	-39.0	NM_024200	67414.0	Mm.290414	NM_024200	ENSMUSG00000027668	Mfn1	2310002F04Rik|6330416C07Rik|D3Ertd265e|HR2|mKIAA4032	mitofusin 1	protein-coding	7.92101045205026	7.79489129560622	7.86434879215148	8.05291927254495	7.77373925847979	7.92527190212091	8.03054308428981	7.83660870487316	-0.0341875287683057	0.838982909891394	0.938856878340637
Merged-chr11-115049450-4	chr11	115049358	115049558	+	879.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1163.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	4.38313577271692	4.58330081156528	4.42793815732451	4.28303981155046	4.79292245048402	4.31820693017056	4.31917608552126	4.76508933179582	0.366332690144033	0.342439084804348	0.651479970526772
Merged-chr10-88794904-3	chr10	88794805	88795005	+	979.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175158, intron 22 of 61)	intron (NM_175158, intron 22 of 61)	31909.0	NM_175158	70683.0	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	5.17853343485478	4.63119080288843	4.70516942988681	4.96528518731143	4.17533112546684	4.38140982958766	4.52092307094553	4.91347598922494	-0.788767642535308	0.0476407599829918	0.22509553888086
Merged-chr6-86849018-1	chr6	86848918	86849118	+	1000.0	f0_c57.idr	promoter-TSS (NM_177762)	promoter-TSS (NM_177762)	422.0	NR_028298	67170.0	Mm.119489	NR_028298	ENSMUSG00000100164	2610306M01Rik	-	RIKEN cDNA 2610306M01 gene	ncRNA	5.15672318050047	4.92140279695619	4.84750081106707	4.79730323329566	5.14951896954019	5.38814562297828	4.82467672484306	5.09143190214646	0.38654762655503	0.235952729966713	0.545918160675954
Merged-chr10-77314901-4	chr10	77314805	77315005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024838, intron 6 of 11)	MTE2b|LTR|ERVL-MaLR	55605.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	7.47478667550185	7.71794362827733	7.4373850368667	7.9221342697444	7.34379831028798	7.15948894183422	7.68004521396002	7.64807707054085	-0.25003170838812	0.237668076671769	0.547836940728215
Merged-chr9-70731271-4	chr9	70731158	70731358	+	897.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007399, intron 4 of 15)	L2|LINE|L2	52276.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	4.30177752194882	4.45624314491681	4.3024206447263	4.54940713990015	4.48012719446185	4.33288015698197	4.56916165117918	4.38896212205121	0.0646934943290183	0.862593497118997	0.948225401948674
Merged-chr3-69126549-4	chr3	69126477	69126677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008467, intron 1 of 16)	CpG	515.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	5.92539153647199	5.79619665493267	6.16687109764997	6.03612310823654	6.281313556999	6.30234005609494	6.58011509516867	6.23960415511136	0.560262138359255	0.0183462614039243	0.120913753747216
Merged-chr9-13701949-4	chr9	13701845	13702045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173776, intron 2 of 3)	intron (NM_173776, intron 2 of 3)	39485.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	6.10737335321755	6.25417011871488	6.26771710274966	6.59014657034271	6.31056426915405	5.74479676382033	6.63078415136782	5.94630248127352	-0.179473879870208	0.527074620403282	0.784096064657872
Merged-chr9-41136708-4	chr9	41136591	41136791	+	985.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	21371.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	6.68258978461133	6.85170746018803	6.59979940480982	6.32580978725345	5.80720899350271	6.26674465117214	5.92054080671842	5.45365420063658	-1.11575341096789	4.9511877910021e-05	0.001122001260031
Merged-chr11-87026709-4	chr11	87026623	87026823	+	993.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32961.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	5.71348975665837	5.56824550971764	5.59354010090503	5.29993134648658	5.6239447220008	5.28368228466664	5.61465733345552	5.06271791599146	-0.194516702295613	0.52466741650916	0.783071329178099
Merged-chr2-30128995-4	chr2	30128888	30129088	+	961.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4377.0	NM_001290503	227693.0	Mm.44526	NM_178694	ENSMUSG00000039686	Zer1	C230075L19Rik|Zyg11bl	zyg-11 related, cell cycle regulator	protein-coding	5.1000881902976	5.08132048645251	4.1522795559896	3.8175924344856	4.85927003653177	5.27249048411414	4.7452007743401	4.80261496548881	0.546403711373166	0.261667280301813	0.573611813883764
Merged-chr15-25364250-7	chr15	25364143	25364343	+	879.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027395, exon 2 of 2)	exon (NM_027395, exon 2 of 2)	49521.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	3.83945320740879	3.82179074215956	3.98388523062191	3.70645875851104	3.75477929649075	3.9082133256555	3.96624871321727	3.83778163147845	0.0968259149534171	0.826815741973021	0.933571279466746
Merged-chr17-86973067-6	chr17	86973008	86973208	+	982.4074099999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	9997.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	3.72491418867888	3.7419948497455	3.6221914757064	3.17821100209418	3.89722130767554	3.7944629197124	3.43766501462348	3.50815095520596	0.310604343930081	0.56140565412045	0.80494560024742
Merged-chr19-17244391-2	chr19	17244276	17244476	+	932.375	f0_balb.idr|f1_balb.idr	Intergenic	RLTR11A|LTR|ERVK	95129.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	3.34594867207917	3.16209339707667	3.49060052280557	3.75869685628137	2.61191898873051	2.72969644971514	2.77622463167361	2.85761778822652	-3.90255478412012	7.52735408359815e-06	0.000213802688075193
Merged-chr3-51342686-4	chr3	51342554	51342754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2010.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	5.69554770836955	5.64508108890769	5.41310929251996	5.1560940506614	5.38038119979171	5.33619145377394	5.49587166923112	5.31963052794814	-0.163979718775557	0.583861444995232	0.817485282428486
Merged-chr10-60192015-3	chr10	60191909	60192109	+	768.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016803, intron 2 of 3)	intron (NM_016803, intron 2 of 3)	27251.0	NM_016803	53374.0	Mm.12866	NM_016803	ENSMUSG00000057337	Chst3	C6ST|C6ST-1|GST-0	carbohydrate (chondroitin 6/keratan) sulfotransferase 3	protein-coding	3.18371135108177	3.02328577084067	3.29540274388343	3.1780487195489	3.42853091619209	2.80449407491313	3.0522120344934	3.39559424869283	0.107156631357585	0.86264586292311	0.948226310734467
Merged-chr1-51493731-1	chr1	51493631	51493831	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-15332.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	4.2760012297901	4.45840739258455	3.85635237687339	3.93003102450942	3.99709474778889	4.13628022569061	3.8411283516399	3.79800037567847	-0.528997371967861	0.250123171857662	0.561217956991978
Merged-chr2-181598984-4	chr2	181598927	181599127	+	959.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172676, exon 1 of 5)	5' UTR (NM_172676, exon 1 of 5)	120.0	NM_172676	229011.0	Mm.205422	NM_172676	ENSMUSG00000038605	Samd10	D930033N23Rik|E130318E08	sterile alpha motif domain containing 10	protein-coding	4.08896632333504	4.15426378244078	4.17968632853914	4.03562047545937	4.07278654514101	4.16541285157883	3.8727412272836	4.08710830262825	-0.149179978812194	0.716977053709547	0.88685113334428
Merged-chr13-98810383-4	chr13	98810285	98810485	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 1 of 25)	intron (NM_172591, intron 1 of 25)	5064.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	4.84257962913014	4.98869022109184	4.68279123429346	5.1200253476084	4.90509183744334	5.08979026927299	4.74347400334615	5.14086463203918	0.0770379401656472	0.819026665064891	0.930681321455107
Merged-chr9-104629980-3	chr9	104629878	104630078	+	938.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	60495.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	3.59685838586887	3.91213173691405	4.01881833953368	3.89383105627125	3.41528695205038	3.40018127944864	3.40772592417356	3.59538272536972	-1.32699642971508	0.0083929118294644	0.0694246451027828
Merged-chr17-79303450-4	chr17	79303354	79303554	+	829.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51637.0	NM_026514	260409.0	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	4.20975637825968	4.04559111132555	4.2103725364457	4.34914688741543	4.72081492086185	4.57211184688492	4.50183066247071	4.86415908867659	1.03012870005638	0.00678333961833806	0.0595132910999242
Merged-chr15-97830946-3	chr15	97830886	97831086	+	867.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204276, intron 1 of 25)	CpG	781.0	NM_019572	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	3.59573605307855	3.27039087485823	3.44591839518238	3.52810926512454	3.22898986537652	3.3250896004053	3.07086706347886	3.49601843985835	-0.640751644804897	0.239785723158006	0.550287206237546
Merged-chr7-19228195-4	chr7	19228113	19228313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207525)	promoter-TSS (NM_207525)	-176.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	9.01687401565069	9.36125873694938	9.1951411601611	8.81667152107747	9.31610293288733	9.54490355519563	9.25344065264107	9.20498110196697	0.278299061530273	0.110208151365499	0.366573710612399
Merged-chr11-70376350-4	chr11	70376249	70376449	+	971.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEf|LINE|L1	-24318.0	NM_009660	11687.0	Mm.4584	NM_009660	ENSMUSG00000018924	Alox15	12-LO|12/15-LO|15-LOX|Alox12l|L-12LO	arachidonate 15-lipoxygenase	protein-coding	5.36456221920865	5.20822801476265	4.97117688889345	5.13145696373896	5.00403701281215	4.73833757084095	4.8368511002773	5.10268073050369	-0.46418652198193	0.147789430490894	0.429174814283846
Merged-chr16-52453190-4	chr16	52453091	52453291	+	983.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331110)	promoter-TSS (NM_001331110)	-110.0	NM_001331110	11658.0	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	6.13517827376822	5.97809977126671	6.64248969265651	6.26865226351907	5.49866787194955	5.4611790270855	5.78416553735357	5.23530612698695	-1.23833190566808	1.68476975589478e-05	0.000439429191846225
Merged-chr18-79181553-3	chr18	79181451	79181651	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-72160.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	5.40526804090408	5.64850229673737	6.39482023122212	5.99231892945222	4.24601460904648	4.44556039949442	4.75201167859787	4.36091858046933	-2.85551162762606	3.35649489344204e-13	3.94244141947708e-11
Merged-chr2-165856215-4	chr2	165856105	165856305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	1968.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	6.02454319363453	5.70050170239854	5.67052096454034	6.06509663147559	5.70023209820517	5.90077606628897	5.93167599467292	6.21206329949196	0.0848650753760024	0.753390668214262	0.902798885097597
Merged-chr6-86584435-6	chr6	86584380	86584580	+	974.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43694.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	4.47116564714985	4.49253243727595	4.42893949149849	4.19702777064664	4.68173291397361	4.939680235366	4.49247204434755	4.18775503987576	0.477516839671172	0.225964448130532	0.534554181708966
Merged-chr11-94994441-3	chr11	94994338	94994538	+	632.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172261, intron 1 of 9)	intron (NM_172261, intron 1 of 9)	3226.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	3.77989593689159	3.58745201212185	4.28485002001622	3.66622684437925	3.6106423920452	3.4030713299646	3.86268325703767	3.92422969494203	-0.401302613887216	0.44294428216639	0.729629169998677
Merged-chr11-63051274-4	chr11	63051193	63051393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10366.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	7.96141915991079	7.81432333333925	7.74079162707151	7.95514734594037	7.81103340598308	7.63868386130099	8.05256615948282	7.71927609254276	-0.0756437392716337	0.668671265472535	0.863196405156422
Merged-chr6-122892685-4	chr6	122892616	122892816	+	819.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18159.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	3.90546681831089	3.75333517411029	3.95402348132484	3.66790432075685	3.94949650575766	3.8131484205739	3.84021111376529	4.12688576517121	0.360440746134891	0.416748921522351	0.710662693395928
Merged-chr1-154097868-4	chr1	154097770	154097970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-103317.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	6.6322178539188	7.04089009270717	6.44969518981827	6.54694876365055	6.69607679711563	6.99625822524284	6.41670498359321	6.49785440393131	-0.0245449759935708	0.920472680134154	0.970498072867264
Merged-chr4-8793426-4	chr4	8793329	8793529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 2 of 36)	L1MA4|LINE|L1	42105.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	5.24188482815897	5.12233471633786	5.30831647550444	5.69491098279425	5.14449383809689	5.4538953856682	6.09411494358669	5.68771364355792	0.450388437352708	0.192882424745372	0.492880205024262
Merged-chr5-92309764-7	chr5	92309629	92309829	+	981.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172713, intron 1 of 21)	CpG	295.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	4.59994492445889	4.43359607831938	3.90593132272204	4.2211972473684	4.61793633937371	4.65374090533552	4.72288211698245	4.84175284842467	0.893107784112523	0.0216751150942981	0.135033643627686
Merged-chr2-117914101-4	chr2	117914008	117914208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	92180.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	6.22009625593845	5.92391079391094	6.32364416571804	6.35062828650753	5.62375470601824	5.10732184313307	5.82132410816674	5.89392926013443	-0.91127810591545	0.0016084189161532	0.0197497341647941
Merged-chr11-26452979-5	chr11	26452999	26453199	+	920.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102382, intron 7 of 11)	MTD|LTR|ERVL-MaLR	66015.0	NR_102382	67030.0	Mm.18875	NM_025923	ENSMUSG00000004018	Fancl	2010322C19Rik|AW554273|B230118H11Rik|Phf9|Pog|gcd	Fanconi anemia, complementation group L	protein-coding	3.70378078815788	3.80469556876671	4.13529397834645	3.90260279144299	3.72110429251387	3.98536227477453	3.89778244371313	3.95965136095457	-0.0209557543016849	0.962787020389598	0.986713566358706
Merged-chr3-69228208-2	chr3	69228108	69228308	+	704.708374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	5789.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	3.24552090860624	2.77635594432665	3.3589717483703	3.06689240680367	3.62970338933631	3.23461544052442	3.29060905711323	3.40994091342341	1.01765327275971	0.0889501130450742	0.325426600742717
Merged-chr16-57390870-3	chr16	57390765	57390965	+	861.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	37588.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	3.5185625335211	3.39073285495748	3.51904591793031	3.62594859652541	3.48130154923958	3.33655796964208	3.60419678655283	3.28910117465421	-0.29051915446286	0.569550084782477	0.80940091369722
Merged-chr12-52396550-3	chr12	52396446	52396646	+	988.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84063.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	4.5935736971963	4.49450941983612	4.73871296766796	5.03065285186092	4.5361711192666	4.21199814445357	4.17626871186526	4.13814849340812	-1.03721825900777	0.0110002975958195	0.0844978586265457
Merged-chr2-166805503-4	chr2	166805396	166805596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085495)	promoter-TSS (NM_001085495)	-85.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	7.356369050377	7.50091933137885	7.29507908949519	7.09886197793716	7.49769050843371	7.70528441761237	7.44630427037726	7.25752244616974	0.231112182475017	0.2388647731919	0.54925393929983
Merged-chr15-53140466-4	chr15	53140352	53140552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	205731.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	7.06831801736315	7.55828582468963	7.86819935149049	7.6104430469235	7.18968938418082	6.9687601741721	7.0213319648677	7.02634341501272	-0.675441818479492	0.00197934879346339	0.0232182049719728
Merged-chr6-38900939-4	chr6	38900848	38901048	+	813.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18038.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	4.02377046143375	3.64472572334832	3.79054546271118	3.44643606890363	3.91399776146365	3.68559805184816	3.66914456576921	4.06372072399184	0.33878947840944	0.488525744727855	0.761344727658502
Merged-chr8-110998367-4	chr8	110998256	110998456	+	899.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007916)	promoter-TSS (NM_007916)	-533.0	NM_007916	13680.0	Mm.287901	NM_007916	ENSMUSG00000015023	Ddx19a	DBP5|Ddx19|Eif4a-rs1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a	protein-coding	4.54899400414923	4.44299659532239	3.96483960200091	4.12306122671028	4.48544435155429	4.30081341918178	4.20367306200744	4.26528207597866	0.0981461368121174	0.812296418311636	0.927484347824058
Merged-chr11-33170689-4	chr11	33170574	33170774	+	724.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7468.0	NM_008722	18148.0	Mm.485384	NM_008722	ENSMUSG00000057113	Npm1	B23|NO38|Npm	nucleophosmin 1	protein-coding	4.17638379894694	4.17769243139745	3.83909296982103	3.72508704282803	4.05411300682803	4.06798998867171	3.8239759227846	4.2160266591395	0.170207789933188	0.704544597065718	0.881307709007534
Merged-chr8-122501055-4	chr8	122500985	122501185	+	759.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037298, intron 10 of 50)	intron (NM_001037298, intron 10 of 50)	24942.0	NR_152823	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	4.05660138032365	4.00072631532576	3.75926999597095	3.48081559832544	3.95999867556832	4.22654453545102	3.6881320113247	3.96291070898648	0.384716580850647	0.425082120577526	0.716665962258408
Merged-chr8-35570992-3	chr8	35570915	35571115	+	862.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BC1_Mm|scRNA|scRNA	-16783.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	4.06869861318687	3.92531607935128	3.94221822544181	3.70494000151243	3.26228966020332	3.37028650808623	3.96742833954908	3.52266817969436	-1.09022965025471	0.0422943677605285	0.208669217635451
Merged-chr6-24721897-3	chr6	24721799	24721999	+	861.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11346.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	2.924309060273	2.91977967059058	2.98123874984382	2.9866133972591	2.88065146900002	2.77351965243119	2.5163858405252	2.73711602211783	-1.00974707820851	0.128092473874298	0.398300388707292
Merged-chr15-58108413-2	chr15	58108322	58108522	+	602.166626	f0_c57.idr|f1_c57bl6.idr	exon (NM_027435, exon 16 of 28)	exon (NM_027435, exon 16 of 28)	26660.0	NM_027435	70472.0	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	3.38192387206477	3.01992284775846	3.56046617302939	3.01416506799247	3.60354483411046	3.79014551683119	4.11266680098148	3.71518272582262	1.85618355666458	0.000748488950173728	0.0106788324282253
Merged-chr3-100189688-2	chr3	100189588	100189788	+	713.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_104341, intron 8 of 13)	intron (NR_104341, intron 8 of 13)	27225.0	NR_104341	14547.0	Mm.279228	NM_010269	ENSMUSG00000027865	Gdap2	C77050|D3Ertd801e	ganglioside-induced differentiation-associated-protein 2	protein-coding	2.71371188801938	2.57516971429287	2.84524234721494	2.60815612588198	2.89467533662732	3.13232308208249	2.83484120112909	2.90468884975133	1.20415788163725	0.0531605407580276	0.240446980403866
Merged-chr5-140615863-4	chr5	140615770	140615970	+	879.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008494)	TTS (NM_008494)	8529.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	4.41739015236444	4.86477513174896	4.46306260023103	3.84382074370315	4.66223268072635	5.13719967436287	4.44251048932931	4.5456437178874	0.604233216116983	0.176802279993765	0.472023160709509
Merged-chr1-74369150-2	chr1	74369036	74369236	+	1000.0	f0_balb.idr|f0_c57.idr	3' UTR (NM_001033345, exon 10 of 10)	3' UTR (NM_001033345, exon 10 of 10)	-6067.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	5.70837789310774	5.64949454137251	5.99577020347349	5.80910679526337	5.98685616549055	5.74757790944559	6.34614658893683	6.20661809217063	0.46770212868899	0.0749284679684349	0.295311928102172
Merged-chr14-55094941-4	chr14	55094811	55095011	+	875.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153083, exon 1 of 2)	5' UTR (NM_153083, exon 1 of 2)	127.0	NM_153083	105663.0	Mm.319204	NM_153083	ENSMUSG00000045691	Thtpa	AW122966	thiamine triphosphatase	protein-coding	3.95253996640439	3.88308137651938	3.90372867225551	4.09900658387336	3.84048938685327	3.97266028049766	4.07244168197952	3.85022205523953	-0.108106383819727	0.802594005666654	0.923936032101707
Merged-chr4-133130047-3	chr4	133129894	133130094	+	891.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153423)	promoter-TSS (NM_153423)	-639.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	3.56370835557091	3.67360638754717	3.66436550501448	3.07001670106971	3.38221985260335	3.5144097963275	3.12843374783734	3.66207605448907	-0.252616858204311	0.66071238551707	0.859001764228847
Merged-chr10-51527107-4	chr10	51527046	51527246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS4-int|LTR|ERV1	36248.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	4.38793096865574	5.03660209518404	4.86152912999307	4.51416325993516	4.85614406958004	5.26183877612271	4.76453665889613	4.99469664589581	0.522169047581373	0.155277724848955	0.440954046559896
Merged-chr12-3365215-4	chr12	3365116	3365316	+	963.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008445)	promoter-TSS (NM_008445)	84.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	5.76877244997138	5.28838489565481	5.99686001551396	5.41202689507288	5.41007218194924	5.55053938435801	5.54582499478629	5.36990942321391	-0.280534508135098	0.354957702800298	0.661579026385505
Merged-chr19-6840857-6	chr19	6840861	6841061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019924)	promoter-TSS (NM_019924)	-334.0	NM_019924	56613.0	Mm.20914	NM_019924	ENSMUSG00000024952	Rps6ka4	1110069D02Rik|90kDa|AI848992|Msk2|mMSK2	ribosomal protein S6 kinase, polypeptide 4	protein-coding	4.41499116582142	4.8337390903765	4.99008764819692	4.38048710522512	4.32047219214435	4.83445181274286	4.09516521746746	4.45740258269543	-0.498524587215005	0.23904199527792	0.54953718047565
Merged-chr10-128131528-4	chr10	128131412	128131612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019711, exon 13 of 13)	3' UTR (NM_019711, exon 13 of 13)	38729.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	6.5442346171243	6.45011623211592	6.57765907445559	6.83897848368578	6.75720715984109	6.40990444531177	6.62095269784904	6.47363076489919	-0.0629669968320729	0.779059830080931	0.913829539187166
Merged-chr15-6267121-4	chr15	6267040	6267240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-32649.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	5.86223886061637	5.72418183050831	5.44717030136177	6.09292357459803	5.79444321403194	5.87246217675427	5.45030185974206	5.44339339015621	-0.266378098855027	0.365099670483231	0.669793916220568
Merged-chr10-80688041-4	chr10	80687944	80688144	+	953.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 3 of 3)	B3|SINE|B2	-11751.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	5.29178741720575	5.2645348220364	4.53735921173346	5.06593179635779	5.673590360326	4.72379928593503	4.98099752107763	5.37181111037531	0.327439187384684	0.401814077851755	0.699361618043386
Merged-chr10-30755251-4	chr10	30755077	30755277	+	894.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 2 of 14)	intron (NM_001358842, intron 2 of 14)	48149.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	3.38506439011579	3.33421435029128	3.9432172216671	3.70033196758555	3.82349291684607	3.56260735763161	3.43507571719675	3.667245453211	0.0601805480082569	0.909207569027432	0.966244025263977
Merged-chr1-79672029-4	chr1	79671931	79672131	+	963.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183027)	promoter-TSS (NM_183027)	-59.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	4.92813614049116	4.61214321444932	4.9289612526973	4.87309931906573	4.8012710760281	4.75870041755545	4.72540881514117	5.02304885178738	-0.0194638173861305	0.953461951213182	0.983444766711298
Merged-chr1-172335964-4	chr1	172335866	172336066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5244.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	6.88620021323133	7.16844674774307	7.06500746234186	6.68415930904219	6.5338546170936	6.49648584982496	6.30488667741193	6.16497858170231	-0.814228853841323	0.000435149658310898	0.00689066018440744
Merged-chr18-79246469-3	chr18	79246398	79246598	+	677.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137107.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	2.88200148672528	2.86839985306114	2.88240744622093	2.83692129985055	2.49354567311861	2.43511892016449	2.55954037367625	2.7637161314488	-1.58170818918247	0.0254079374140487	0.15019428892487
Merged-chr10-111100272-4	chr10	111100172	111100372	+	887.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64530.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	4.09287511213095	4.34873082700297	4.29334671141355	4.54575156969105	4.61984403988371	4.4209676132871	4.36326923240332	4.57945796989197	0.359109791640158	0.356479292102325	0.662883007207157
Merged-chr14-19417463-4	chr14	19417396	19417596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	185091.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	6.330515724389	5.87843347886651	6.83123288003518	7.57949137354686	5.43313994380709	5.87605501497255	5.47266237477043	6.19423711410569	-1.53504543252271	0.00829201235629776	0.0688380158046324
Merged-chr11-102893170-2	chr11	102893070	102893270	+	627.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010277, exon 6 of 9)	exon (NM_010277, exon 6 of 9)	4030.0	NM_001131020	14580.0	Mm.1239	NM_010277	ENSMUSG00000020932	Gfap	AI836096	glial fibrillary acidic protein	protein-coding	2.77115292259572	2.97361818745796	2.69852644550755	2.95779110247273	3.0702502956856	3.13861407546992	2.95847848886086	3.19100938150285	0.947108974246263	0.121000413457473	0.385200072878461
Merged-chr3-21992337-4	chr3	21992259	21992459	+	888.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84293.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.61748797503196	4.15974475640107	4.33692641862438	4.51154508836785	4.32299827479859	4.32161584358814	4.73108719359157	4.24118240533608	-0.00816158434830263	0.983658541756419	0.994100000074476
Merged-chr2-35984079-4	chr2	35983976	35984176	+	850.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4452.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	4.51030583069325	4.05447903125327	3.80309401292278	4.09012488691219	4.62067543654923	4.30824240044317	4.11582743548809	4.31252261717416	0.547034577021517	0.209431093666367	0.513944471391425
Merged-chr12-113218089-4	chr12	113217984	113218184	+	886.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32181.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	4.31370799204545	4.3173391597588	4.12899420299119	4.3022241939927	4.26371223819601	4.14864732526092	4.45514404458915	4.43477775060794	0.14328077192261	0.7105572579543	0.884197177759025
Merged-chr8-70629940-4	chr8	70629841	70630041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001330687, exon 3 of 3)	exon (NM_001330687, exon 3 of 3)	2154.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	7.08562930948125	6.66161055786034	6.89799094440353	6.74771388769065	7.39644971758143	7.32036700515188	6.76451146774629	7.1610821955252	0.465039813622937	0.0375317628389984	0.193486879634755
Merged-chr4-139242638-4	chr4	139242545	139242745	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	48534.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	5.94324442024578	5.86308800508073	5.9229644957559	6.39346479214689	5.13670880238709	5.25389587611469	5.65804236702096	5.8063169892805	-0.951801280553612	0.00191099805347963	0.0225726734896493
Merged-chr17-53587251-4	chr17	53587154	53587354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190846, intron 1 of 17)	intron (NM_001190846, intron 1 of 17)	3128.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	7.4831354877706	7.03865293586369	7.49357570598018	7.53885021120437	7.27075971917151	7.66130481570993	7.35220373624939	7.35364491649944	0.00848319440784016	0.96682393143689	0.988303662335512
Merged-chr3-109456523-3	chr3	109456417	109456617	+	772.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	115834.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.13093676130449	3.87475727419725	3.87248895458358	4.37761694661793	3.32328175635376	3.31734092895385	3.65046225509877	3.48312213411201	-2.05640198010337	0.000110777093318434	0.00220930308918824
Merged-chr1-84422018-2	chr1	84421918	84422118	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 8 of 12)	MTC|LTR|ERVL-MaLR	-137373.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	3.19634214552738	3.09226413991489	3.25649154786099	3.26378482631745	3.15638434403994	3.36941658765809	3.59412437079302	3.19514749064236	0.472880723236245	0.387108167131379	0.688085997159096
Merged-chr11-101969046-4	chr11	101968948	101969148	+	882.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2033.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	4.13056877826755	3.92425092870189	4.17703333640095	4.06947960518232	4.30617045272998	4.10597283662002	4.15864691588643	4.30262873482314	0.383135487851845	0.338124720441583	0.647796331490298
Merged-chr17-70852927-5	chr17	70852790	70852990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164074, intron 1 of 2)	CpG	642.0	NM_001164074	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	7.83361939134904	8.49677057371689	8.02347188757336	7.49234000207277	8.32660069847059	8.60617875062558	8.12466951593772	7.64450174437262	0.268454708223962	0.3078876254362	0.620245472813609
Merged-chr18-34858166-4	chr18	34858074	34858274	+	940.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-3033.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	4.4810442366901	4.78430226242521	4.37694636483691	4.54581370130929	5.80342936047385	4.80893201049159	5.54965204951198	5.07843333206373	1.58451996698093	3.07101029487975e-05	0.000741907029308209
Merged-chr14-93650243-4	chr14	93650162	93650362	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	240407.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	4.50451068467585	4.35550685334529	4.21535615862372	4.61634190246435	4.87953712988998	4.59270063918311	5.00514072082677	4.77451710622726	0.80745333765416	0.0282427630149744	0.16093534166668
Merged-chr8-27023127-4	chr8	27023017	27023217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153592)	promoter-TSS (NM_153592)	-682.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	6.8732242186494	7.3942792103202	7.13206388249898	6.96912927570142	7.46505437648468	6.78422966630026	7.37574350180198	7.32077935620457	0.221992899459889	0.331468775607674	0.642595786244724
Merged-chr8-120364550-4	chr8	120364451	120364651	+	910.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124315.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	4.27113225072977	4.85049632461007	4.55071587700432	4.74588573591195	4.54390184002558	4.98385887155492	4.52991048111069	4.50530522081879	0.0382998740899036	0.920558897104545	0.97051709600836
Merged-chr5-20228075-3	chr5	20227969	20228169	+	813.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 5 of 22)	intron (NM_001170746, intron 5 of 22)	320551.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	3.78910590487268	3.41045353202613	3.74312355716084	3.83438626037398	3.32624873245304	3.76287157960101	3.40892605076303	3.29217501358798	-0.823652275514187	0.118888029955112	0.381409432738762
Merged-chr18-34865383-4	chr18	34865341	34865541	+	939.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007913)	TTS (NM_007913)	4234.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	4.19731034783925	4.25372253938305	3.49583968308927	3.45803439814234	4.2877001349392	4.36798732357831	3.8497751672774	3.8635492172148	0.549160200854218	0.303808240818622	0.616555796305716
Merged-chr5-123508330-4	chr5	123508256	123508456	+	930.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001289822)	TTS (NM_001289822)	-2104.0	NM_198611	231727.0	Mm.484068	NM_198611	ENSMUSG00000029431	B3gnt4	1010001G17Rik|BGnT-4	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4	protein-coding	5.10591867729725	4.5728774480062	4.74546788294938	4.92715625393911	4.4775792869166	4.88067852879937	4.60472201500651	4.74233561372435	-0.374886517151074	0.295706201923496	0.60765742950211
Merged-chr1-39636362-3	chr1	39636257	39636457	+	911.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170597, intron 2 of 3)	intron (NM_170597, intron 2 of 3)	14825.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	3.70644864477271	3.47243523716593	3.60941498513087	3.71450630377581	3.36556694798119	3.43968732366064	3.3765335523276	3.50177677964541	-0.719736143060775	0.149614438034893	0.431954493586666
Merged-chr7-48749402-4	chr7	48749324	48749524	+	986.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39579.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	4.62758967953046	4.91278034936447	5.0851737800532	5.09596965620112	4.98549073513596	5.12392865680734	5.18119158855325	5.01604884543617	0.229730466951649	0.478799342699113	0.754690163973656
Merged-chr5-130081432-4	chr5	130081328	130081528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130476, intron 1 of 5)	intron (NM_001130476, intron 1 of 5)	2058.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	5.97458418827686	6.36655187112661	5.77555295527979	6.24890206793669	6.15241788879576	6.12962983864872	6.49544134562138	6.2224027008513	0.20018907414848	0.434609259090463	0.723830138349948
Merged-chr1-63114543-6	chr1	63114435	63114635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081436)	promoter-TSS (NM_001081436)	64.0	NR_045915	100380944.0	Mm.392955	NR_045914	ENSMUSG00000084799	Ino80dos	Gm11602	INO80 complex subunit D, opposite strand	ncRNA	6.23308023144797	6.41604266907458	6.56406202445358	6.0009669193008	6.28155549856665	6.61116526581098	5.96414276340275	6.76941714075519	0.191672917725608	0.483617428649691	0.757924280106044
Merged-chr19-40630831-4	chr19	40630725	40630925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	L1MDa|LINE|L1	18459.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	7.50570878626656	7.17292260877027	7.3434765534321	7.28535976001072	6.94961066744431	7.05091575897258	7.0594293104092	6.89783087754587	-0.46503825398558	0.0136603992112644	0.0982949409076617
Merged-chr18-35874575-4	chr18	35874480	35874680	+	891.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19893.0	NM_001357459	67393.0	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	4.84703295258948	4.50313558360675	4.63730898503964	4.721571633247	4.31021080372265	4.25709497838667	4.85556890086663	4.38206727747005	-0.468792368745226	0.224429814976214	0.532782075570323
Merged-chr17-56220025-4	chr17	56219929	56220129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1140.0	NM_172624	224897.0	Mm.205535	NM_172624	ENSMUSG00000001229	Dpp9	6430584G11Rik|A330078I11|DPP IX|DPRP2	dipeptidylpeptidase 9	protein-coding	5.52324759555983	5.45397382569305	5.52420509446019	5.49340151306114	5.43231060415523	5.43220977286459	5.54882936433028	5.52033239695279	-0.0263833286141146	0.92093428471054	0.970697193120266
Merged-chr7-80055997-4	chr7	80055873	80056073	+	847.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	19284.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	3.91509032453494	3.67218241491707	3.77700125093577	4.03505656527774	3.43823210188145	3.55955044180895	3.60723650659619	3.5042617415389	-1.07949251027819	0.0268253047910364	0.155704017754316
Merged-chr13-98968195-2	chr13	98968090	98968290	+	600.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	16375.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	3.60732165432311	3.60718470553132	3.85172296328808	3.42130650478563	3.47160494274818	3.9278549463937	3.36165035954639	3.4938355381022	-0.142065707455618	0.784055122135983	0.91594470512568
Merged-chr11-114890246-4	chr11	114890167	114890367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347654, exon 1 of 7)	5' UTR (NM_001347654, exon 1 of 7)	226.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	8.12737460943616	7.9404812739395	8.29121708564026	8.07542206649346	8.0972541505608	8.06746808688715	7.98694173034783	8.25278603079161	-0.00839898028893391	0.959762899689345	0.985625544893058
Merged-chr4-75315622-4	chr4	75315529	75315729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37337.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	6.364945127397	5.7529623834011	6.93370928187073	6.96245760045834	6.29859526573676	5.91077347617203	6.60518752423937	6.01273725805387	-0.529777297998168	0.108361890017784	0.363310926499097
Merged-chr18-34103239-2	chr18	34103139	34103339	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96033.0	NM_013512	13824.0	Mm.3465	NM_013512	ENSMUSG00000024376	Epb41l4a	Epb4.1l4|Epb4.1l4a|NBL4	erythrocyte membrane protein band 4.1 like 4a	protein-coding	3.09035564981128	2.9907054750219	3.36314042289218	2.95623567148191	3.1541622315696	3.13766971474873	2.95445909374623	3.36111366951811	0.230547925749263	0.693245548909395	0.875262817171833
Merged-chr5-125391220-3	chr5	125391128	125391328	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1211.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	3.17407005202316	3.41196244422656	3.23632073374563	3.29152343722732	3.28887143496738	3.34785434317017	3.49286485907453	3.29372317803056	0.260182932447302	0.618639388772181	0.836039000482598
Merged-chr3-95687927-4	chr3	95687802	95688002	+	992.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144899)	promoter-TSS (NM_144899)	15.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	5.06343505690346	5.26219686144734	5.16349087531066	5.34598266451317	5.0715208269994	5.30420286380209	4.97029370472908	5.09473680596177	-0.214843789413857	0.479216361845041	0.754966499629671
Merged-chr8-24395014-4	chr8	24394913	24395113	+	726.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43933.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	3.56319390698744	4.01121769921865	3.62461941278634	3.97603925481409	4.16903136722908	3.80090682266352	3.87696635756383	3.841695584877	0.32706109354741	0.494787049162589	0.765318948505887
Merged-chr7-66135836-4	chr7	66135736	66135936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 2 of 2)	intron (NM_001081163, intron 2 of 2)	26321.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	6.97046205248267	7.01034234447217	6.85252713587651	7.1799550673225	6.78010307475793	6.73493482113576	6.77557117067485	7.23796947420651	-0.168247113801183	0.435939885876559	0.724909826814801
Merged-chr10-82699105-4	chr10	82699001	82699201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081218)	promoter-TSS (NM_001081218)	94.0	NM_001081218	67933.0	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838|fkls	host cell factor C2	protein-coding	6.8539549767035	7.15059578916398	6.97600609047814	6.84856065587876	7.09269247654745	7.22705073455298	7.33191702544675	6.87811083777388	0.25213478674355	0.216539094040797	0.523149690269835
Merged-chr3-109030817-4	chr3	109030717	109030917	+	974.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3210.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	4.73214671728841	4.52804175807557	5.01324349161638	5.27940470013509	4.65344908936485	4.3983288532063	4.85723575174599	4.97800179327269	-0.399181316751272	0.305486608810673	0.617899566472771
Merged-chr6-83690443-4	chr6	83690352	83690552	+	771.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-12595.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	3.69340376243633	3.6727990774553	3.42380252353415	3.38952223136755	3.63019553269102	3.41041284889929	3.52489719497219	3.82835799955446	0.21186602254007	0.672903507239982	0.865470992373222
Merged-chr10-7780239-3	chr10	7780154	7780354	+	812.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145418, intron 1 of 7)	intron (NM_145418, intron 1 of 7)	663.0	NM_145418	215751.0	Mm.471825	NM_145418	ENSMUSG00000040006	Ginm1	AA589616	glycoprotein integral membrane 1	protein-coding	2.9865074494372	2.95895965297682	3.48608667598888	3.04461558689831	3.23734719656952	3.16324748781905	3.22018495603613	3.17393515981324	0.264700917476265	0.646552340975896	0.851366985708531
Merged-chr8-117241266-4	chr8	117241175	117241375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-15744.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	5.48347166060386	5.58562385644917	5.42422683802987	5.72647736157629	5.45369112954245	5.89864619337917	5.89623821795337	5.7916433144181	0.311945880193848	0.262258655911853	0.574172499368134
Merged-chr13-69383470-3	chr13	69383353	69383553	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150411.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	3.62951813732604	3.73126814870196	3.40665201296746	3.41776741376104	4.83435426635346	4.46019928210286	4.59924454034666	4.68443476405369	2.91453447783389	3.45374323401296e-11	2.84530080617834e-09
Merged-chr6-86396142-4	chr6	86396059	86396259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025823, intron 1 of 5)	intron (NM_025823, intron 1 of 5)	991.0	NM_001355687	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	6.58453360883906	6.37393732853872	6.81279098962673	6.59695153865267	6.5571373283597	6.59594266519461	6.23666162978943	6.34180091999538	-0.22403485826291	0.321981082005036	0.633481969373104
Merged-chr3-96058466-3	chr3	96058354	96058554	+	581.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013841)	promoter-TSS (NM_013841)	1.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	3.52186068996895	3.15755641482029	3.23413836994053	3.15817050724204	2.88628133956074	2.89588484754947	2.85345401465276	2.99628906193713	-1.55705380368237	0.0119652893735107	0.0897352578566136
Merged-chr6-67069406-4	chr6	67069304	67069504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040278, intron 4 of 6)	Lx5|LINE|L1	-31997.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	6.69451751280974	6.60893335702975	6.71022786318355	6.60177651677266	6.7486553409168	6.55918594143016	6.63214784981909	6.39590510783725	-0.0740545764218011	0.722731322188043	0.88928524667289
Merged-chr2-21141874-4	chr2	21141801	21142001	+	839.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	63464.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	3.87031702122601	3.95125782773839	3.97491253509271	4.08220217507744	3.98316821639432	4.14710578456116	4.18523060130279	4.24246078045213	0.410914483363321	0.323701385648023	0.635168599008701
Merged-chr4-141431239-3	chr4	141431140	141431340	+	700.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4865.0	NM_001033374	277744.0	Mm.33952	NM_001033374	ENSMUSG00000070637	Srarp	Gm694	steroid receptor associated and regulated protein	protein-coding	3.88714293767584	4.06526204834565	3.47187015308257	3.51788262236913	4.07649807009314	3.52570219565438	3.33282856067157	3.27339192633488	-0.464642404036243	0.434557456100664	0.7238182012175
Merged-chr10-14054435-3	chr10	14054334	14054534	+	893.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	88055.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	3.80880790751563	3.98318074291179	3.65979686632544	3.6379474378879	3.63814681918425	3.41000644194964	3.53621885506627	3.65774564339286	-0.648447782410077	0.186196982862691	0.484113766444254
Merged-chr12-38779197-1	chr12	38779097	38779297	+	1000.0	f0_c57.idr	promoter-TSS (NM_007960)	promoter-TSS (NM_007960)	-885.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	5.33056659995182	5.66332517497437	5.33147291566188	5.51811919247296	5.60718523419723	5.34185390550177	5.61056404706372	5.73060304020846	0.183462278768161	0.51053231530873	0.774867939359323
Merged-chr12-30597134-4	chr12	30597028	30597228	+	971.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12685.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	4.66368781335265	4.4600229041505	4.73646248655524	5.03669583932614	4.39648822499278	4.24650055658654	4.60503822048217	4.22474296259895	-0.842712120802683	0.0316068239018373	0.173338344492593
Merged-chr17-64617999-4	chr17	64617895	64618095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	16346.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	5.90668555451507	5.38509599486978	5.90773518443743	6.3106566639525	5.61346175262256	5.36959614081406	5.33425061433841	5.45097068339175	-0.802535315146684	0.0103895452553047	0.0811675383302966
Merged-chr3-19311485-6	chr3	19311385	19311585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122759)	promoter-TSS (NM_001122759)	-163.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	6.57612202302005	6.16580292096107	6.9130819671436	6.98666620247045	6.83974399587329	6.96863528679265	6.89069794596949	6.97060284668071	0.289897749979029	0.236654008582482	0.546655618028751
Merged-chr5-135907096-4	chr5	135907006	135907206	+	983.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	19187.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	5.69318895945318	6.18280191964904	6.26874575322424	6.29153803144941	5.25180340771252	5.21927570285494	5.3769421447611	5.83711040386207	-1.14502090525338	0.000131686544683374	0.00255752157271975
Merged-chr1-132054583-4	chr1	132054484	132054684	+	739.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114662, intron 3 of 9)	B3|SINE|B2	13478.0	NM_172510	213006.0	Mm.208445	NM_172510	ENSMUSG00000059149	Mfsd4a	A230072B04|A930031D07Rik|AI850289|Mfsd4	major facilitator superfamily domain containing 4A	protein-coding	3.74760932827698	4.1806293857265	3.74811121544533	3.89290583022014	3.94611335163561	3.62492029712006	3.93338741863365	3.90046846800112	-0.12859360866001	0.780579880971172	0.914582639467442
Merged-chr1-154096332-4	chr1	154096251	154096451	+	932.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104836.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	4.34215280483471	4.12314331306768	4.25605972226058	4.32150383803556	4.22815855552433	4.38278155073866	4.14532616481674	4.38127775275696	0.0443170203335474	0.908988079879584	0.966156082397695
Merged-chr14-52015772-5	chr14	52015695	52015895	+	897.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253694, intron 1 of 5)	MIRb|SINE|MIR	-1070.0	NM_001033805	619301.0	Mm.475177	NM_001033805	ENSMUSG00000072571	Tmem253	G630016D24Rik	transmembrane protein 253	protein-coding	3.23534782778722	3.01374772979577	3.62344970203189	2.95769334753647	3.21052127953304	3.09789887577839	2.97761522772585	3.17615129208825	-0.408767390213039	0.50293807948201	0.770061726885433
Merged-chr9-106372024-4	chr9	106371930	106372130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153459, intron 2 of 2)	intron (NM_153459, intron 2 of 2)	3398.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	7.03647176825115	7.10020727971015	7.03769724934042	7.25135530450416	7.53990886468041	7.61955449088089	7.6036991375657	7.29934785456019	0.540081145579039	0.00375116318259171	0.0380835892417195
Merged-chr7-27577134-4	chr7	27577019	27577219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175107, intron 8 of 9)	Lx8|LINE|L1	-14433.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	5.65855118477463	5.49303545416306	5.22864718841038	5.42289680092477	6.49332720341745	6.2849216316136	6.54982332534063	6.49466478651572	1.57745902900821	1.01760814301723e-10	7.75506745308601e-09
Merged-chr7-55956957-4	chr7	55956848	55957048	+	673.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023647, intron 1 of 6)	MTD|LTR|ERVL-MaLR	5545.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	3.30917323034649	3.62317396533962	3.24476607628005	3.4290964038208	3.72892557817172	3.6020858967175	3.4733911012613	3.59083039509499	0.626910433188688	0.214907406355709	0.52090493349428
Merged-chr14-47518842-2	chr14	47518742	47518942	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027414, intron 4 of 5)	intron (NR_027414, intron 4 of 5)	46281.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	2.80174568044913	2.71542293400498	2.73550282785987	2.7155481497498	2.81435677320107	3.09411418879678	2.85508323482276	2.98191084331729	0.88888626523152	0.142293034167992	0.419796840696448
Merged-chr12-31967759-4	chr12	31967663	31967863	+	990.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011158, intron 6 of 10)	intron (NM_011158, intron 6 of 10)	-17518.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	5.0316576145381	5.1487675036024	4.84122922375742	4.9552611725041	5.29832894792882	5.24284407148507	5.42499139792339	5.39675712594198	0.640095895555056	0.0300884673505214	0.167534537177866
Merged-chr5-30014742-4	chr5	30014647	30014847	+	959.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001314054, intron 2 of 4)	intron (NM_001314054, intron 2 of 4)	1633.0	NM_031168	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	5.24829146040951	5.00752482554939	4.71549288610654	5.0116939930272	5.35306105212679	5.09509331192949	5.30662964221921	4.95279115826081	0.351258563802279	0.275191497859167	0.586982242558338
Merged-chr17-71178708-3	chr17	71178593	71178793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-4839.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	5.32018550557317	5.500734526207	5.56849665824879	5.73242533570897	5.04996292154935	5.49575617979985	5.23295633539568	4.97154313514566	-0.639795650797893	0.0359389563619992	0.188358660988936
Merged-chr1-36556735-4	chr1	36556629	36556829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304329, intron 1 of 14)	intron (NM_001304329, intron 1 of 14)	828.0	NM_001304330	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	7.51714650092748	7.64007376195953	7.59784540640066	7.33110105734904	7.49314557373796	7.60105106371268	7.61064231520616	7.16969274585798	-0.0522655667427077	0.78566192741263	0.916599143290613
Merged-chr2-121509773-4	chr2	121509672	121509872	+	911.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290987, intron 1 of 11)	intron (NM_001290987, intron 1 of 11)	3049.0	NM_001290986	241627.0	Mm.293284	NM_030234	ENSMUSG00000027242	Wdr76	5830411K18Rik|6030457D09|AA517836	WD repeat domain 76	protein-coding	5.00485945435411	4.85864766239893	4.77077636582498	5.02157936138403	4.44385385396845	4.70450330950772	4.55084965569329	4.52488504531788	-0.796551408636596	0.0205210639619539	0.130233888644012
Merged-chr13-37355787-4	chr13	37355691	37355891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	10446.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.53583161122028	5.2545906659572	5.39742763021991	5.64018972629738	5.57253847960905	5.54245626817038	5.37063511143816	5.36390358596608	-0.0130986762041007	0.963142221877122	0.986827734965212
Merged-chr17-13817953-4	chr17	13817844	13818044	+	904.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 5 of 33)	intron (NR_151731, intron 5 of 33)	-56550.0	NM_022311	21646.0	Mm.486358	NM_022311	ENSMUSG00000038347	Tcte2	AI429268|Tcte-2	t-complex-associated testis expressed 2	protein-coding	4.07370188260257	4.10356793132308	4.56607210381293	4.41296836148962	4.656007029821	4.19992893373452	4.61571874228018	4.40534245485178	0.413411191419291	0.308327873895631	0.620728298903074
Merged-chr3-104501852-2	chr3	104501752	104501952	+	924.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025067, intron 1 of 17)	ORR1E|LTR|ERVL-MaLR	10066.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	3.0858586803128	3.16153692867541	3.27444188558013	3.08595827974485	3.46555988785782	3.38778117759239	3.31858528103598	3.53564462884476	1.02902150177417	0.0484082780136712	0.227142456323545
Merged-chr19-55294238-4	chr19	55294138	55294338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027976, exon 19 of 22)	exon (NM_027976, exon 19 of 22)	21798.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	5.36491122481835	5.173023399043	5.33592090336761	5.25363504241834	5.43222769080454	5.53996876748744	5.57879191131259	5.44773249437717	0.388025427511991	0.157421253715916	0.443941656824295
Merged-chr4-141512352-3	chr4	141512258	141512458	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	26239.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	3.64013043158093	3.57137129907184	3.72164390458669	2.47864739337027	5.81265007725193	5.7744788576471	5.83378453743008	5.84468798922301	8.52196835543803	1.91835742879948e-26	1.43733435183704e-23
Merged-chr19-38054889-4	chr19	38054789	38054989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360663)	promoter-TSS (NM_001360663)	-95.0	NM_028293	74107.0	Mm.9916	NM_028293	ENSMUSG00000024989	Cep55	1200008O12Rik|2700032M20Rik	centrosomal protein 55	protein-coding	8.52413401039417	8.33135686942178	7.94419170554089	7.96919428018102	8.32618428847357	8.37339280921296	8.30343143172159	7.93151966977019	0.0438349752483227	0.827324266134151	0.933797258511357
Merged-chr11-53567397-4	chr11	53567317	53567517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290805)	promoter-TSS (NM_001290805)	48.0	NM_001290806	16568.0	Mm.88694	NM_008443	ENSMUSG00000018395	Kif3a	Kif3|Kifl|Kns3	kinesin family member 3A	protein-coding	6.67191916166152	6.70867208111153	6.9923761122912	6.92576839131588	6.50264061249214	6.93686496140777	6.29414338468775	6.47205811541814	-0.38201692244523	0.0984429210564884	0.343994301133918
Merged-chr14-111676046-4	chr14	111675907	111676107	+	827.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198865, intron 1 of 1)	CpG	892.0	NM_198865	75409.0	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	3.52780567434436	3.46389090083709	4.02176892782563	3.98159846644842	3.75246644693687	3.6443658176052	3.78270692047339	3.58516058702762	-0.257729032522789	0.609035370204869	0.83089280248568
Merged-chr11-109370043-3	chr11	109369955	109370155	+	796.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-6401.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	3.40416025873429	3.42067713897005	3.16194433950705	3.25747844045019	3.5571978331891	3.40134571448124	3.39142356806599	3.50875681743595	0.548594659277382	0.282262969303099	0.594454214370181
Merged-chr7-126707877-4	chr7	126707790	126707990	+	924.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3074.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	4.36298123156153	4.25425598240063	3.91595266553958	4.4337976680464	4.33495354418184	4.40417744120239	4.11661853547144	4.62510701675545	0.269411579674366	0.517301695261338	0.778803651723338
Merged-chr15-6569939-4	chr15	6569827	6570027	+	877.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9920.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	3.63791983961923	4.09330038221658	3.90834570726508	3.81123003190163	4.02014986301562	4.07832351124445	3.73851079720075	3.75107407900066	0.10290516461688	0.822500656412602	0.932143478460956
Merged-chr6-134607526-4	chr6	134607434	134607634	+	800.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	24954.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	3.91253892578197	3.90022410221197	4.01368244733584	4.11064822009383	4.04709414752376	4.08639033075579	4.13263315341764	4.10445719203842	0.247641826289878	0.549808012194149	0.798147832027397
Merged-chr6-41191110-4	chr6	41191019	41191219	+	839.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111153.0	NM_011646	22074.0	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	3.99709672343171	4.05084811613868	4.45170968621246	4.41329461142946	4.41311472968624	4.66786786404308	4.47266225604785	5.1501498521908	1.01348555604899	0.0176405902456775	0.11754723582635
Merged-chr10-127607261-4	chr10	127607162	127607362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 4 of 88)	L1ME3G|LINE|L1	13886.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	6.71378935622709	6.40869485235993	7.35513286468735	6.7128727657413	6.19102529798251	6.15968151472796	6.04310031376205	6.04664079278168	-1.06904965387933	7.17403949593691e-05	0.00153394307613987
Merged-chr16-87713152-4	chr16	87713023	87713223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	14169.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	5.42920085633641	5.69908584091085	5.9199203705031	5.91574138428272	5.72816922842863	5.60849406255015	5.70713324942741	5.9368538304294	-0.0275147565405534	0.919270846922425	0.970285021467879
Merged-chr1-37492401-3	chr1	37492334	37492534	+	900.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 4 of 15)	intron (NM_173870, intron 4 of 15)	-3829.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	3.03062559832805	3.03385677758163	3.31717090100984	2.46364651745131	2.92871097723139	3.00980630509424	3.30206505706983	3.31505843349343	0.5728451460652	0.409169422857852	0.704831627974249
Merged-chr5-125434145-4	chr5	125434046	125434246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_203319)	promoter-TSS (NM_203319)	-98.0	NM_203319	208144.0	Mm.296385	NM_203319	ENSMUSG00000029480	Dhx37	Gm1050|Gm451|mKIAA1517	DEAH (Asp-Glu-Ala-His) box polypeptide 37	protein-coding	8.4968177989319	8.51354279959455	8.24439870109792	8.31122887330341	8.49490174415612	8.67114686714147	8.46860933490808	8.49268655188791	0.174269501221317	0.266232051186433	0.578020222870011
Merged-chr10-81127768-3	chr10	81127659	81127859	+	952.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8512.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	3.9039314359954	3.83618444772599	3.99823316800714	3.85232031183616	4.01629875481613	3.92315455522022	3.56179385879529	3.90219456880475	-0.0766830059717264	0.865236070529612	0.949535988663619
Merged-chr7-127027379-4	chr7	127027281	127027481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010772)	promoter-TSS (NM_010772)	-902.0	NM_010772	17188.0	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	8.04613924292753	8.06636343042191	7.87772173380627	7.6673446840368	8.35255054139948	8.39782604046845	8.10426998734468	8.17373056467797	0.446287627264131	0.0120972043674178	0.09047448452643
Merged-chr1-17097885-3	chr1	17097768	17097968	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020604)	promoter-TSS (NM_020604)	21.0	NM_020604	57339.0	Mm.143761	NM_020604	ENSMUSG00000042686	Jph1	JP-1|Jp1	junctophilin 1	protein-coding	3.9341476720284	3.42713684325491	3.49759980483838	3.8825114093707	3.37693208147866	3.49089985226932	3.48454667077075	3.65850751530312	-0.666975104209761	0.19830032748343	0.499800779736617
Merged-chr1-39443815-2	chr1	39443715	39443915	+	731.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357521, intron 1 of 19)	intron (NM_001357521, intron 1 of 19)	34932.0	NM_018775	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	2.91315088689973	2.96693490446224	2.97300480019026	2.77507959014847	3.20347255849532	2.7482222166121	2.90316376389412	2.71569774731853	0.0560874398861178	0.930286230308769	0.974837964654887
Merged-chr10-10429838-4	chr10	10429757	10429957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 9 of 36)	intron (NM_001127353, intron 9 of 36)	42457.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	5.56790755719702	6.36937396555025	6.27539229106775	6.31696481234221	6.75725368723659	6.13665924082849	6.36710676693846	6.23293360970461	0.341843109670804	0.231752076030858	0.541273042204025
Merged-chr4-7405290-4	chr4	7405214	7405414	+	876.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-155374.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	4.52171678297415	4.33022140737391	4.34889238900768	5.07772867218403	4.65375899701009	4.38075021805993	4.18434958824148	4.519522608459	-0.394311120829499	0.358781804829927	0.664733460513024
Merged-chr8-25007975-4	chr8	25007881	25008081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270996, intron 1 of 21)	intron (NM_001270996, intron 1 of 21)	8941.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	5.87249451171035	6.05769905346604	5.89620284696951	5.93481279198815	5.95669569906791	5.85221746266015	5.69925374715362	5.50053392865898	-0.275957567462475	0.28381981953186	0.595894370080181
Merged-chr2-122146843-4	chr2	122146759	122146959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009735)	promoter-TSS (NM_009735)	-828.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	5.71267209070014	5.62536049156749	5.63403256835489	5.69645213211494	6.19895052713203	6.05622783598366	5.82949139088893	5.73508283222727	0.499098852092434	0.0529343306770093	0.240003358383263
Merged-chr8-104239738-4	chr8	104239625	104239825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 4 of 8)	PB1D10|SINE|Alu	8833.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	7.36166484064343	7.50140478307217	7.42374066318475	7.79899578557335	7.64817038976319	7.37444229045794	7.53556917808173	7.61919088181457	0.00751419969848284	0.968767264661548	0.988770775768857
Merged-chr19-5648886-4	chr19	5648758	5648958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009045)	TTS (NM_009045)	11368.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	7.09330677840265	7.35404782265324	6.95405568054902	6.97932093987191	7.36321031082856	7.5513733139236	7.32849807256096	6.97586457628815	0.296072824438388	0.159773474216085	0.447490207020803
Merged-chr2-3519993-4	chr2	3519892	3520092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177647, intron 2 of 3)	RMER10A|LTR|ERVL	6927.0	NM_177647	227526.0	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	5.42993501212751	5.6032794731682	5.51798408202257	5.65762735025319	5.825653090978	5.7203747970495	5.57134804376265	5.48577332102563	0.16831957676529	0.53105500292033	0.787007371494195
Merged-chr5-99335204-5	chr5	99335134	99335334	+	903.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-82307.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.19956757783254	3.83408270540424	3.5748120878238	3.70723409023971	3.96917034860668	3.80985550558297	4.02211680461481	3.85050589913021	0.214373676245474	0.646620075717359	0.85139884884082
Merged-chr9-99090115-4	chr9	99090006	99090206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 7 of 23)	intron (NM_029094, intron 7 of 23)	50105.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	6.69801601886212	6.72237640841451	6.89435287367858	6.8489618180405	6.77266625913327	6.69853924833692	6.72380285222826	6.80962860504164	-0.0619556462648286	0.752238312345558	0.902363969099289
Merged-chr8-84069919-4	chr8	84069806	84070006	+	625.366638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	3070.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	4.0556723208185	3.80648591344251	3.73069670613087	3.76290094444392	3.52065155132436	3.6783401734837	3.86374580737227	3.72859744999032	-0.425854743078428	0.364068753483863	0.668974102388618
Merged-chr19-5107082-4	chr19	5106984	5107184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029576)	promoter-TSS (NM_029576)	-88.0	NM_029576	76308.0	Mm.182563	NM_029576	ENSMUSG00000024870	Rab1b	1110011F09Rik	RAB1B, member RAS oncogene family	protein-coding	7.66726884594626	7.68965801033767	7.65175283284212	7.34709445702306	7.83083789769496	7.82055853760324	7.71944032692111	7.67990645298114	0.237366157604798	0.181768331127614	0.478446672285694
Merged-chr7-100501335-2	chr7	100501241	100501441	+	742.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	7983.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	4.75636185009668	4.18220444591347	4.2399014861384	4.25779599460307	3.79273466843142	4.36836230309513	4.38990597101736	3.98678864443664	-0.548796067416848	0.22388168595129	0.532058179170207
Merged-chr12-100067608-4	chr12	100067508	100067708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4a|LINE|L1	-44723.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	6.58454744541729	6.47697390371466	6.50635627519747	6.76698592883476	6.4619226489147	6.3268725884683	6.26039725742869	6.34495969697502	-0.359623141721722	0.0997902813344932	0.346554080557567
Merged-chr9-121249944-4	chr9	121249861	121250061	+	969.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177589, intron 15 of 36)	intron (NM_177589, intron 15 of 36)	27211.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	4.78919369226406	4.58278170400873	4.82968651796707	4.8150755586903	5.21881405545935	5.11675780630971	5.3872483401752	5.16752117656915	0.902894747530877	0.00389859616689256	0.0392778735404452
Merged-chr17-29082139-4	chr17	29082033	29082233	+	963.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3007.0	NR_036469	100504267.0	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	5.45007447568294	6.09323638269085	5.16530797718891	5.28648036445486	5.67398906214101	5.7848247504728	4.99109014754127	5.16178167255941	-0.178174779653539	0.630605869392377	0.842943438890496
Merged-chr11-94550348-4	chr11	94550246	94550446	+	954.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1139.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	4.78917179711364	5.31086646772671	5.01950043939882	4.93958066843982	4.8125653577547	5.74722932393221	5.30226330784549	4.65529910611534	0.31511099443114	0.420870605594647	0.713588262204841
Merged-chr1-34859738-4	chr1	34859616	34859816	+	747.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357425, intron 2 of 8)	intron (NM_001357425, intron 2 of 8)	9727.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	3.66824870646547	3.32559374612176	3.72131134989403	3.52661102032104	3.58807061677956	3.94184322264907	3.8943725773202	3.76953659042881	0.71963471522287	0.135565878235765	0.409882068088671
Merged-chr1-157043551-1	chr1	157043451	157043651	+	852.5	f0_balb.idr	Intergenic	Intergenic	65099.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	3.0992990755226	3.14754686088621	3.32042438101602	3.3642036199542	3.30166641342001	2.939042987739	2.82669528753806	3.09815956104417	-0.700464508894831	0.25543718407145	0.566984717387572
Merged-chr11-5020903-2	chr11	5020803	5021003	+	691.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243043, intron 7 of 22)	intron (NM_001243043, intron 7 of 22)	34079.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	2.81349142792778	2.60395719845664	2.75591089908979	3.21857223722781	2.28707095826802	2.44395281102051	2.41395106101439	2.49303858501453	-2.91297317635691	0.000809740141937492	0.0113524706643626
Merged-chr6-97450916-4	chr6	97450718	97450918	+	932.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	L1_Mus1|LINE|L1	8468.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.06145614400045	3.11150663344975	3.06183168108545	3.05735414741068	3.09645417286157	3.39914103312197	2.92452580857623	2.99782898343946	0.168864597631597	0.769543660236737	0.909742530773464
Merged-chr12-73445314-3	chr12	73445207	73445407	+	943.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35744.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	3.63568435896648	3.40515318640339	3.77992132241012	3.94238599176198	3.5126138184248	3.33308803669388	3.4612680847458	3.41358849656056	-0.917490306967772	0.0792708778730855	0.304748680320192
Merged-chr8-105283324-4	chr8	105283221	105283421	+	940.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001166394, exon 5 of 7)	exon (NM_001166394, exon 5 of 7)	6207.0	NM_001166394	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	5.18699905329529	4.86726330454312	4.79032565680588	4.96046894754391	5.12579908095632	4.61769790288328	4.87860363463157	4.86265034768316	-0.121739150800432	0.720100796923146	0.888119741205493
Merged-chr11-84180218-4	chr11	84180134	84180334	+	979.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12758.0	NM_001037932	628813.0	Mm.390389	NM_001037932	ENSMUSG00000051452	Gm11437	AI463690	predicted gene 11437	protein-coding	4.57908728842181	4.93420642547034	5.02667632658239	4.7746005031703	4.80064813554347	4.84209222440433	4.51445713364927	5.17080914236517	0.0305360642992014	0.931796408200811	0.975357890284199
Merged-chr1-150405638-3	chr1	150405544	150405744	+	764.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133780, intron 7 of 51)	intron (NM_133780, intron 7 of 51)	-12564.0	NM_001357579	226499.0	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	3.48587927417029	3.51019769346017	3.22967781141962	3.82500203215846	3.43152460435594	3.47941018877707	4.131939883676	3.54155599606634	0.427459792201182	0.452178556822934	0.736563551184282
Merged-chr6-137687913-4	chr6	137687816	137688016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38631.0	NM_007945	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	5.78607250217102	5.81351644663686	5.61788703430749	5.69316343311237	5.30631919055892	5.33617261290072	5.82316064380303	5.29209504334434	-0.465119403555476	0.102368485752986	0.351426953188569
Merged-chr4-139092955-3	chr4	139092850	139093050	+	690.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008675)	promoter-TSS (NM_008675)	20.0	NM_008675	17965.0	Mm.9404	NM_008675	ENSMUSG00000041120	Nbl1	D4H1S1733E|DAN|Dana|NO3	neuroblastoma, suppression of tumorigenicity 1	protein-coding	3.32059518444627	2.99946687974531	3.10665869875096	2.9385691972257	3.08253738208373	3.02673004729727	3.03608326303214	3.04538534520872	-0.167057242535157	0.773222399116356	0.911211873289787
Merged-chr12-110454351-4	chr12	110454261	110454461	+	910.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135001, intron 2 of 13)	intron (NM_001135001, intron 2 of 13)	7182.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	3.98463651519704	4.16140211714537	4.17938942645549	4.14177708618968	4.30843104372872	4.05428345239268	3.91631857830685	4.45784433790434	0.216451621754996	0.60540796681687	0.828850276728959
Merged-chr15-28413735-4	chr15	28413625	28413825	+	977.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 65 of 78)	intron (NM_133365, intron 65 of 78)	209959.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	4.42764916752189	4.68236441249773	4.74333950534024	4.61632419856284	4.59150996613713	4.64576673149446	4.53481111888698	4.23388810566767	-0.242635500660068	0.508003941562437	0.773227537346521
Merged-chr12-108932310-2	chr12	108932210	108932410	+	864.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	38038.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	3.4806611719068	3.98131989838581	3.53785991948	3.8414478153007	3.2550046005145	3.53690867623605	3.57775359138584	3.3581426734784	-0.990752353692528	0.0605399060334521	0.260052547978977
Merged-chr14-14012568-4	chr14	14012491	14012691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139227)	promoter-TSS (NM_139227)	100.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	6.74582634263702	6.22202904372946	6.91847820362873	6.94312002964906	6.62359812631717	6.5102629459278	6.76770887670361	6.42204772132448	-0.221767592101931	0.365913278444938	0.670528570049488
Merged-chr11-114879834-4	chr11	114879736	114879936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10205.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	6.86100573070001	6.79800690985223	6.88910140926416	6.79284749701277	6.87125326312282	7.01106498649487	6.95592143975238	6.8842249114596	0.135958071301169	0.472676969877488	0.750765866162416
Merged-chr6-82863673-3	chr6	82863581	82863781	+	847.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18172.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	3.99858562334223	4.09133455751091	4.08743334875527	4.14981860161198	3.4400422752311	3.97605721977835	3.67697346614803	3.5681705374935	-1.22970041639795	0.00970450073823504	0.077244817937047
Merged-chr17-32788032-3	chr17	32787916	32788116	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346705)	promoter-TSS (NM_001346705)	271.0	NM_172458	208292.0	Mm.38813	NM_172458	ENSMUSG00000024298	Zfp871	4732483N19|9030612M13Rik|AI118577|AI265322|mKIAA3006	zinc finger protein 871	protein-coding	4.86864106828163	4.71623949662283	4.79502426308471	4.39400983017331	5.07080210625965	4.97059107913961	4.56702308006501	5.413329663231	0.705726174032389	0.0571263387950193	0.250489476319268
Merged-chr1-161035059-4	chr1	161034966	161035166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151478)	promoter-TSS (NR_151478)	150.0	NR_153812	14455.0	Mm.270065	NR_002840	ENSMUSG00000053332	Gas5	Gas-5|Mir5117|Snhg2	growth arrest specific 5	ncRNA	7.96254068691472	8.3408903558561	8.15077157832141	8.10751671542009	8.2884048898718	8.37708388993662	8.26342789351261	8.13291890955718	0.152955950206033	0.353798238770005	0.660607141402643
Merged-chr5-17821623-4	chr5	17821520	17821720	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159557, intron 4 of 15)	intron (NM_001159557, intron 4 of 15)	14276.0	NM_001159555	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	5.26023303689515	4.67145584677145	4.92235741420108	5.40033506352752	5.3128164377078	5.10021432741903	5.32049214028284	5.37102701861892	0.312510820352399	0.356126469392861	0.662704502355483
Merged-chr13-30645816-4	chr13	30645736	30645936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-14223.0	NM_001037955	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	5.66962364828409	5.03905848591882	5.8069276642122	5.83340018009841	5.13088562556676	5.42475491266911	5.59306360028391	5.30840850752328	-0.452858570515366	0.162612345245999	0.451973295414306
Merged-chr6-113691230-4	chr6	113691121	113691321	+	929.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 11 of 11)	intron (NM_001113553, intron 11 of 11)	-5829.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	4.73528480093831	4.27748283237445	4.8032257091707	5.01519218328312	3.91252291069019	4.416300307032	4.05822292723464	4.62502201835908	-1.05965233129895	0.0163835997385266	0.111744753333517
Merged-chr5-140636875-4	chr5	140636772	140636972	+	815.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	12159.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	4.40084483616954	4.24418761422558	3.88895749845447	4.17428884103286	3.91366771091427	4.22474237342287	4.34218803487655	4.190822432456	-0.0489349580232705	0.908102380683028	0.965960244231753
Merged-chr1-37428097-2	chr1	37427993	37428193	+	597.5	f0_balb.idr|f0_c57.idr	intron (NM_198006, intron 2 of 2)	intron (NM_198006, intron 2 of 2)	2010.0	NM_198006	76178.0	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	3.34845578865153	3.38872158439897	3.46423166162322	3.46004051416108	3.68432770486454	3.19293663403497	3.69729068433608	3.51629673786166	0.416840590659286	0.421534233663973	0.714001052191097
Merged-chr11-104550607-4	chr11	104550526	104550726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285990)	promoter-TSS (NM_001285990)	-6.0	NM_001285988	217232.0	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	6.79708973206157	7.22023082135747	6.25852579247847	6.19123561183364	7.02631913505949	7.5453970391948	6.32975025135615	7.10560697626229	0.531739792356162	0.261675963798406	0.573611813883764
Merged-chr2-170317005-4	chr2	170316895	170317095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39366.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	6.72638102454549	6.73505948731647	6.77150378976143	7.04196478564255	6.77179550067943	6.82769985340082	6.75134532360633	6.889897207555	-0.0445310575106529	0.827662914871267	0.933903677361406
Merged-chr6-88828190-4	chr6	88828106	88828306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011844, exon 8 of 8)	3' UTR (NM_011844, exon 8 of 8)	13729.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	7.86840629338326	7.94307661606187	7.78487877340876	8.11787297654525	7.77841642982838	8.11258186271714	8.09251084213395	7.93681444475268	0.0496149540874434	0.779250018016534	0.913841690258744
Merged-chr1-80641454-4	chr1	80641357	80641557	+	946.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	23895.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	4.57102599240736	4.91892840901878	4.52933469572568	4.59620994521865	4.94438653218139	4.70413595299334	4.66911319273527	4.34183835532799	0.0644883378142634	0.862652436721985	0.948226310734467
Merged-chr7-43353332-4	chr7	43353253	43353453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145581, intron 5 of 9)	intron (NM_145581, intron 5 of 9)	2012.0	NM_145581	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	7.51909350732652	7.48712962124005	7.78236589324645	7.62273018566956	7.309766559597	7.52202276847036	7.41805459350623	7.36031217422007	-0.275157088987625	0.120723712882196	0.384680506725841
Merged-chr7-114079929-2	chr7	114079829	114080029	+	945.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	37852.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	3.97017424264104	3.81418888747679	3.9206365153655	3.73449367082241	3.88157007806715	3.9909492678198	4.09177377457287	4.38312131495853	0.659721957675774	0.131152181263419	0.403104428771734
Merged-chr2-165969685-3	chr2	165969572	165969772	+	801.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22965.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	3.19668223144029	3.37770333954592	3.06747679897573	2.90159541166106	3.39868657170631	3.42998152455502	3.50729724185202	3.25572581171145	0.968748510947458	0.0811508354943483	0.309177322122516
Merged-chr15-81083494-4	chr15	81083384	81083584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	21563.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	6.82486715791496	7.38328929683203	7.06096813977446	6.8957804729898	6.76077413274372	7.12579047134956	6.95213280780402	6.96983748701378	-0.146209302004154	0.503366740270244	0.770370061830951
Merged-chr13-89383131-3	chr13	89383078	89383278	+	849.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-157458.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	3.12480433011963	2.97336050648167	3.6081290186242	3.28452534999429	3.37300672097355	3.50593152318531	3.73391099774663	3.95605237541006	1.28922954835099	0.0263136211505687	0.153736948196366
Merged-chr11-62494944-4	chr11	62494843	62495043	+	965.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039536, intron 2 of 6)	intron (NM_001039536, intron 2 of 6)	36483.0	NM_001039536	327942.0	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	5.21584505357923	4.80904055283385	5.90793377119443	6.01797959110534	5.06673033520795	4.77045030446116	5.79630707668	5.73537476177851	-0.273726120356186	0.675524636393148	0.866777974061798
Merged-chr4-63544751-4	chr4	63544632	63544832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024173)	promoter-TSS (NM_024173)	-33.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	7.54649341990325	7.54384627405596	7.14643048230495	7.15507158966009	7.67850352416638	7.679977507018	7.48396582389732	7.24603692052252	0.239884310186804	0.245221787988624	0.556284046546467
Merged-chr17-85393232-3	chr17	85393128	85393328	+	755.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028576, intron 4 of 10)	intron (NM_028576, intron 4 of 10)	225168.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	3.20424285316987	3.33766362799532	3.20462773157699	3.40019805298918	3.39928378198268	3.2524543876888	3.13305816172789	3.26153070507821	-0.0996529783763567	0.853592106128884	0.944871617325935
Merged-chr15-76723867-4	chr15	76723774	76723974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176828)	promoter-TSS (NM_176828)	-29.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	7.16312542711154	7.16582156972433	6.53279952432258	6.90624875929312	6.99699495003713	7.0097828585981	6.96806195854959	6.64704948943782	-0.0710648700618111	0.75407010821134	0.903054650924944
Merged-chr7-73452421-3	chr7	73452318	73452518	+	571.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 32 of 38)	intron (NM_001081345, intron 32 of 38)	-76644.0	NR_040324	319783.0	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	3.22282458439865	3.28719809059352	3.16643159766861	3.22972841881288	2.89340853245724	2.94504655150779	3.21064671511935	3.22149656330816	-0.623168806487841	0.280180358258126	0.592253666749477
Merged-chr2-75659099-4	chr2	75658999	75659199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198090)	promoter-TSS (NM_198090)	-160.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	8.83953513790543	8.67856452653496	8.84479808746187	8.81206187278709	8.78222518690576	8.82062427037803	8.87654195405699	8.68226144521009	-0.00367128790084859	0.979622038723877	0.99269129061727
Merged-chr5-146807906-3	chr5	146807791	146807991	+	876.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-12935.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	3.80865053510049	3.49776901597561	3.74822999100281	3.54166907012146	4.65211291760676	4.66330028280207	4.43553558311126	4.17058444391514	2.24088339033032	2.12994716893128e-07	8.52685655440719e-06
Merged-chr18-4803458-4	chr18	4803305	4803505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9081.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	7.03700118700339	6.9403761720381	7.01497198915857	6.97416580840628	6.31757357651813	6.50872820536376	6.96772020556861	6.3248419507133	-0.622144534560668	0.00675391741160492	0.0593136443480107
Merged-chr14-8114344-4	chr14	8114250	8114450	+	928.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	16139.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	4.48370853588879	5.03530595665259	5.02457418246855	4.53955537413345	4.73503314067261	4.5226722953835	4.59097325567866	4.3400223811067	-0.486943295158603	0.208844878921874	0.513218354454688
Merged-chr3-144603753-1	chr3	144603653	144603853	+	677.333313	f0_balb.idr	Intergenic	Intergenic	33326.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	3.8036394571093	3.66267908262107	4.17022930691463	3.8037299097638	3.76894454295324	3.87006828135734	4.02679586487758	3.90370545457292	0.0709819236117311	0.875945458801013	0.953371302804582
Merged-chr12-102469570-4	chr12	102469462	102469662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013747)	promoter-TSS (NM_013747)	-348.0	NM_013747	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	6.26955069936836	6.70254743649361	6.1548522770329	5.98542074412475	6.28844453228039	6.01370293885692	5.88027787377345	6.20963580824209	-0.283377569055668	0.296564074127181	0.608507761092495
Merged-chr17-26465195-4	chr17	26465086	26465286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43286.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	6.64726792824711	6.31763879498477	6.64844213456055	6.97267351589837	7.03278338208961	6.9203041478858	7.4721721444701	7.30986382362028	0.721141971942958	0.00271565781853954	0.0295517211230432
Merged-chr8-71364351-4	chr8	71364325	71364525	+	830.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-2423.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	3.92888878918107	3.84170482904469	3.57778408118788	3.56830063775885	3.69169621845993	3.80708255113955	3.50614955140164	3.73830410538975	-0.125513786095928	0.79360577815602	0.920135943108393
Merged-chr15-84988079-4	chr15	84987985	84988185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033273)	promoter-TSS (NM_001033273)	-114.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	7.99085050013434	8.07642508597305	7.82589853487437	7.71863087145394	8.03581755605237	7.95619909306005	7.98059694789232	8.10917937840904	0.153029625028788	0.367267540941187	0.671678733213071
Merged-chr7-35555422-4	chr7	35555297	35555497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033080, exon 1 of 3)	exon (NM_033080, exon 1 of 3)	531.0	NM_033080	110959.0	Mm.410206	NM_033080	ENSMUSG00000034875	Nudt19	D7Rp2|D7Rp2-r|D7Rp2-s|D7Rp2e|RP2-r|RP2-s	nudix (nucleoside diphosphate linked moiety X)-type motif 19	protein-coding	7.20279679965509	7.00143435159941	7.3990803869797	7.06598610339371	7.03943279457185	7.40288841282768	7.28414041866976	7.35535360898249	0.138765817327193	0.486596134566509	0.760287945502496
Merged-chr16-23290449-4	chr16	23290365	23290565	+	946.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252506)	promoter-TSS (NM_001252506)	-5.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	4.94292621881697	4.99217418388935	4.80264641945947	4.35631625592933	4.6666859292338	5.27066437915027	4.95204639081269	4.36094591146827	0.129278656374922	0.750130858023086	0.901576629816678
Merged-chr4-126131928-4	chr4	126131887	126132087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 6 of 10)	intron (NM_028800, intron 6 of 10)	-16016.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	7.51359001566843	7.56812486774274	7.17087053684147	7.60572279891965	7.29508481692734	7.484598876199	7.79670795439114	7.41509038769719	0.0332957831413001	0.86953928510539	0.951054729822361
Merged-chr9-32487588-3	chr9	32487514	32487714	+	727.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	53838.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	3.65241870729054	3.91180017346281	3.70480477983908	3.56776297751974	3.57497629846386	3.71586631649759	3.52927603094342	3.59691847332226	-0.332316552114999	0.488253368952798	0.76118893988362
Merged-chr4-116177619-2	chr4	116177519	116177719	+	853.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4247.0	NM_001099295	67323.0	Mm.45442	NM_001099295	ENSMUSG00000078593	1700042G07Rik	-	RIKEN cDNA 1700042G07 gene	protein-coding	3.6487339880529	3.85421211583039	3.80405682407517	3.67420984245007	3.62111585534941	3.58860832215475	3.88021480776115	3.75233900938682	-0.0941060022194152	0.839253754020579	0.938895262970456
Merged-chr6-15715195-4	chr6	15715091	15715291	+	963.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_1B-I_MM-int|LTR|ERVK	-5470.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	5.00918926412899	4.42966993687486	5.13668851318031	4.47258058842147	5.34056528926603	4.66744426129123	5.2250271107396	5.07142118526781	0.631134448215384	0.100208321692478	0.347412601906819
Merged-chr17-83397493-3	chr17	83397390	83397590	+	937.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357886, intron 1 of 21)	intron (NM_001357886, intron 1 of 21)	46559.0	NM_001357886	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	4.14901278342483	4.25772194535669	4.33070949893501	4.57000204196315	4.01450430155714	4.0043834727402	4.03211330706738	4.65917832312062	-0.339055810116588	0.443405841838642	0.72990713266033
Merged-chr4-84977063-3	chr4	84976963	84977163	+	899.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175275, intron 7 of 25)	Lx8b|LINE|L1	92754.0	NM_177385	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	3.88428147486933	3.87317973170092	3.9362298599592	4.24768825966683	3.99780836649805	3.89526410587975	4.30325434132527	3.82921582826974	0.0257300846871394	0.954771075154196	0.983838959554429
Merged-chr6-85160412-4	chr6	85160312	85160512	+	805.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22648.0	NM_011467	20751.0	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|Gm10328	sepiapterin reductase	protein-coding	4.79162457222625	4.74633252154071	4.45543785885149	4.39593122780477	4.65015498683921	4.49514981436003	4.25464783584442	4.45265320825449	-0.273625155890491	0.474424770965335	0.75165589989079
Merged-chr12-84252979-2	chr12	84252879	84253079	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16E2|LTR|ERVL	-32317.0	NM_029880	77219.0	Mm.246127	NM_029880	ENSMUSG00000072946	Ptgr2	1810016I24Rik|9130222H03Rik|9630002F03Rik|AI838763|B830026H24Rik|PGR-2|PRG-2|Zadh1	prostaglandin reductase 2	protein-coding	2.83745659761607	3.03589480288174	2.97084553107296	3.03250519166723	2.93731629115341	3.31424677539716	3.13716499027351	3.14780873559607	0.647948224891164	0.266906641174232	0.578523944460569
Merged-chr10-60003139-4	chr10	60003034	60003234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347451)	promoter-TSS (NM_001347451)	1.0	NM_001347451	52717.0	Mm.21793	NM_025514	ENSMUSG00000020107	Anapc16	2310005G07Rik|APC16|D10Ertd641e	anaphase promoting complex subunit 16	protein-coding	7.9477344665882	8.12007077813066	7.83052339734132	7.9038224341181	8.07246515955222	8.18861914516252	7.9927363927346	8.05839574917756	0.159861502325836	0.325326470995561	0.63689686577447
Merged-chr5-64887236-4	chr5	64887135	64887335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45464.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	6.36150810198731	6.94489002529811	6.98074812727214	6.27317452569517	6.35376163411925	6.36580416188855	6.02493445828626	5.87903851949994	-0.735342187433924	0.00881753376722199	0.0720908839900177
Merged-chr2-58715101-4	chr2	58714972	58715172	+	934.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289660, intron 1 of 7)	L1MA4A|LINE|L1	-40112.0	NM_001289659	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	4.03515010015566	4.5737559475007	4.1899589379367	4.3560363696358	4.48146904622512	4.49990285305968	4.54387650505637	3.85951655162797	0.159081258494247	0.715998610839827	0.886371813543908
Merged-chr12-51679942-1	chr12	51679842	51680042	+	807.0	f0_balb.idr	intron (NM_001172098, intron 1 of 15)	L1M4|LINE|L1	-11024.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	3.85630983367996	3.95471922550836	3.54509716420408	3.21965779909156	3.71734289303934	3.88225577816555	3.53161901015321	3.6005302757137	0.0588591474362549	0.912193298210531	0.967198563604406
Merged-chr15-82016268-4	chr15	82016164	82016364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134095)	promoter-TSS (NM_134095)	-44.0	NM_001356541	28075.0	Mm.474453	NM_134095	ENSMUSG00000022472	Desi1	AI427858|AI850401|D15Wsu75e|DeSI-1|Fam152b|Pppde2	desumoylating isopeptidase 1	protein-coding	7.84969790709387	7.97350373128439	7.38864266895663	7.73945851940014	8.05510564370147	8.21459268422995	7.73659373763978	7.79256979233586	0.269467567992684	0.183131493779218	0.479973363123609
Merged-chr17-86918973-2	chr17	86918877	86919077	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277980, intron 2 of 2)	B2_Mm2|SINE|B2	1629.0	NM_030104	78469.0	Mm.67234	NM_030104	ENSMUSG00000037689	Tmem247	1700090G07Rik	transmembrane protein 247	protein-coding	3.25201363615367	3.15394489525565	2.97924541704658	2.35500984974796	2.93011151510336	2.82110695529865	3.02617800450477	2.70974618662137	-0.468153564089217	0.533142702287249	0.788480232425337
Merged-chr4-124802509-4	chr4	124802424	124802624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008636)	promoter-TSS (NM_008636)	-25.0	NM_008636	17764.0	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	7.4434484913859	7.25540980858846	6.84432390261582	6.98670004876349	7.56060108006651	7.43027558819162	7.68281000305077	7.34236934958879	0.490912235076684	0.0182837318082451	0.120579796755219
Merged-chr16-30262961-3	chr16	30262879	30263079	+	901.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027904, intron 1 of 1)	intron (NM_027904, intron 1 of 1)	4553.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	3.30802906785053	4.4540772676635	3.44570962514434	3.21723503585722	3.89442433324294	3.75110344650445	3.82323176173844	3.73685382852691	0.22257660879509	0.716311135286279	0.886548839327121
Merged-chr4-129783021-4	chr4	129782942	129783142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-37437.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	6.07443045438125	6.29109077522362	5.90439570794818	6.19095405242892	5.74465621808547	6.0569050955405	5.53735939852565	5.59077142831829	-0.614578622088446	0.0194792466107747	0.125726631710948
Merged-chr10-127288002-2	chr10	127287902	127288102	+	847.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347171, intron 1 of 12)	intron (NM_001347171, intron 1 of 12)	1016.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	3.20130403587022	3.3221058967114	3.25879205730789	2.93698959072279	3.34464466893326	2.98009008092878	3.18973410385391	3.31153934175809	0.149847181480667	0.79477178572531	0.920603107178875
Merged-chr7-132243070-4	chr7	132242963	132243163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 6 of 7)	intron (NM_029935, intron 6 of 7)	-72601.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	8.23065564147086	8.00898735893669	8.09281856833892	8.03140220841536	8.17700269609716	8.18427471939195	8.21581674351738	7.96658200804701	0.0649536129490357	0.686125804375558	0.871774647810045
Merged-chr7-116597118-4	chr7	116597018	116597218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92749.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	5.68377622515351	5.292162403029	5.71026570793602	5.98194008265184	5.78366558272782	5.78112695821591	5.8674298052834	5.82640052957507	0.173266667612941	0.538307855151958	0.791477449791602
Merged-chr5-65697918-4	chr5	65697785	65697985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081321)	promoter-TSS (NM_001081321)	-29.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	5.23081854664871	5.86494506100568	5.29695826598216	5.14130783049443	5.63547500817664	5.50423243277216	5.47450835698829	5.3852581164696	0.166929082702548	0.595033897029813	0.823701700863203
Merged-chr17-80727632-4	chr17	80727566	80727766	+	951.229126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360278, intron 1 of 33)	CpG	359.0	NM_001360278	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	4.60190807500375	4.29157183098653	4.75487431840766	4.83387220827756	4.5740560915448	4.81461562001865	4.62081441731738	4.63941974958194	0.0268406258452259	0.941738225860036	0.97898049638905
Merged-chr15-26361903-4	chr15	26361814	26362014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	52866.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	5.80894440612136	6.08893265703679	5.95446569339141	6.0986645202768	6.14062889114068	6.23834837410728	6.05311398249488	6.03810925190465	0.178638190332331	0.451454524084818	0.736071851703571
Merged-chr6-48546439-1	chr6	48546339	48546539	+	644.0	f1_c57bl6.idr	Intergenic	Intergenic	-8360.0	NM_001110160	243371.0	Mm.290764	NM_177736	ENSMUSG00000073096	Lrrc61	BC027309	leucine rich repeat containing 61	protein-coding	3.07389974963808	2.91898528255029	3.01552347663142	3.16742096415619	3.29677418765595	2.92629844340977	2.9443264750153	2.88807552148487	-0.0686507564385721	0.910292183746565	0.966671146059764
Merged-chr3-153260797-4	chr3	153260710	153260910	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	37839.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	5.10803456258626	4.59118711783896	5.13907728710699	4.9820800108818	4.96730223351438	4.97422681137154	4.9893069014663	4.67341446887314	-0.11709439851144	0.730787012835224	0.893278365417209
Merged-chr19-34524857-6	chr19	34524809	34525009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021460, intron 1 of 9)	intron (NM_021460, intron 1 of 9)	2565.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	4.9459271472605	5.29991289433785	5.51620253805673	4.75190122355382	4.99548132981786	5.23096828209843	5.161650503366	5.24483869863246	0.0170991075226561	0.960274712671458	0.9858705885281
Merged-chr4-106804429-4	chr4	106804323	106804523	+	940.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347159, intron 1 of 15)	intron (NM_001347159, intron 1 of 15)	584.0	NM_001347159	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	4.30461931574367	4.55087616261769	4.21529759500661	4.48437137977629	4.38270554533362	3.89914306259189	3.94350868075035	4.46519320227226	-0.472694129627631	0.272283091522032	0.583779019836542
Merged-chr17-81705407-4	chr17	81705274	81705474	+	890.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	33013.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	3.75740775249956	3.62347513539355	4.05089078051262	4.21492329571498	3.93150373290343	3.56704040471378	3.98884807071248	3.95812006127188	-0.196038321034502	0.688559662244228	0.872842659950525
Merged-chr15-9572064-4	chr15	9571974	9572174	+	879.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42198.0	NM_008372	16197.0	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	4.02197574953608	3.63232959206001	4.06868220101159	4.30319871309016	3.83136864623947	3.82448414810922	3.95788678154805	4.19495198349534	-0.22064062922403	0.639654977209492	0.847634612685043
Merged-chr7-80802823-1	chr7	80802723	80802923	+	1000.0	f0_balb.idr	intron (NM_016721, intron 1 of 37)	intron (NM_016721, intron 1 of 37)	508.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	6.0172816351434	6.29174631977719	6.14391449600185	5.64836742971471	6.13059665318451	6.23735678305629	6.2616272113417	6.09906402028513	0.235569260221728	0.364800140329968	0.669574759890324
Merged-chr4-42879800-3	chr4	42879697	42879897	+	998.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-5563.0	NM_177785	277773.0	Mm.212727	NM_177785	ENSMUSG00000050141	Fam205c	4931430D02|FAM205CP	family with sequence similarity 205, member C	protein-coding	4.44144539050514	4.66471707394656	3.71987767477648	3.07100826998954	3.90904603285612	3.59754624627789	3.39141393601903	3.25344740850892	-1.61625926445544	0.0986297664700406	0.34420318432884
Merged-chr5-43867410-4	chr5	43867295	43867495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-1414.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	5.59008563154938	6.17458178320717	6.22789936480369	4.96818016357299	5.99415251013805	6.14730278430018	6.42242205889063	5.85227821280904	0.456672986685797	0.197462685317942	0.49888608614888
Merged-chr9-99496019-1	chr9	99495919	99496119	+	581.0	f0_balb.idr	intron (NM_028768, intron 18 of 21)	intron (NM_028768, intron 18 of 21)	25598.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	3.61433976779627	3.51498100616022	3.7545147252712	3.29383078647129	3.63271054725189	3.32626614168318	3.2680860022835	3.27755646989737	-0.512609621398844	0.348476874175122	0.656238106962862
Merged-chr8-13648584-4	chr8	13648485	13648685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	(TTCCC)n|Simple_repeat|Simple_repeat	29002.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	5.91241378068438	5.16923892760311	5.61494411775877	5.95446903863061	5.37941955923755	5.50323082320799	5.29878174324181	5.78034072342222	-0.351744958908731	0.268181944307664	0.580051737028632
Merged-chr2-25196825-4	chr2	25196746	25196946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146115)	promoter-TSS (NM_146115)	-33.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	7.2601016189328	7.47274051595883	7.44467022900265	7.44113537182631	7.33430902440396	7.25018173954165	7.67076734193945	7.24527962436066	-0.0301013284056907	0.874292676306053	0.952841261958902
Merged-chr5-28037386-4	chr5	28037283	28037483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34029.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	7.99802707166427	8.15943929307785	8.2575902985344	8.20487482968851	8.00565008993771	8.02459095209873	7.82440896598582	7.93814114957802	-0.269040089701586	0.0948010378811881	0.336870108015143
Merged-chr5-150156221-4	chr5	150156120	150156320	+	794.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-103710.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	3.43696160263952	3.96010237570848	3.50244436003305	3.64531116645246	3.70655301289757	3.85577564077665	4.12357451090386	3.97572056533814	0.765714559291753	0.116262712231515	0.377232779738281
Merged-chr11-95006755-4	chr11	95006641	95006841	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172261, exon 10 of 10)	3' UTR (NM_172261, exon 10 of 10)	-3138.0	NM_146025	217125.0	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	4.43329013257276	3.93442517733013	3.88464494879212	4.19913070659683	4.23405621599419	4.11756036230648	4.37554626881093	4.1400629254224	0.221144161090188	0.601212157503111	0.827071740947179
Merged-chr10-105508615-3	chr10	105508563	105508763	+	841.744446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177368, intron 1 of 11)	intron (NM_177368, intron 1 of 11)	65816.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	3.46382199339473	3.53362002205362	4.02294966800931	3.89060807323169	3.23771682477311	3.39065289093483	3.50761978821648	3.3404393882666	-1.28785803626136	0.0167018583229596	0.113210320309489
Merged-chr3-27233854-4	chr3	27233723	27233923	+	878.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	50819.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	4.45366852405157	4.54754718826883	4.61649970656205	4.49237595811369	4.75239962210804	4.70965103162443	4.25091981772351	4.40767231567368	0.0637394748999941	0.86446682581092	0.949170626350062
Merged-chr11-108248513-4	chr11	108248405	108248605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	95383.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	5.10985418276657	5.50574939623463	5.24447332822099	5.34520613233013	5.4190260392422	5.35479342755658	5.24987110927881	5.39034731420791	0.0743359124589265	0.796143025526502	0.921052599307061
Merged-chr9-67043955-4	chr9	67043849	67044049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164254)	promoter-TSS (NM_001164254)	-78.0	NM_001164256	22003.0	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|TPM1kappa|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	7.77859382604195	7.5472048902562	7.21997273882632	7.74199427986618	6.76392339362331	7.43066018807928	7.21683249961637	6.85411975803595	-0.683195568216989	0.00314664475591092	0.0331590261749474
Merged-chr16-44760358-4	chr16	44760258	44760458	+	952.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5378.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	4.99612326644716	4.79471916634274	4.57448724994203	4.97090446476211	4.45612095001039	4.31749083544611	4.55357981739026	4.65241774707678	-0.762727354412075	0.0348762259344612	0.184871528581249
Merged-chr12-41438668-4	chr12	41438563	41438763	+	929.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	47394.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	4.92429310390118	4.51742152947367	5.58419074363989	5.97545982642814	4.66224309375759	4.51394485794078	4.90107359598872	5.16050415378636	-1.03023858213136	0.0220177068367144	0.136610735262421
Merged-chr2-144237522-4	chr2	144237459	144237659	+	878.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	28643.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	3.61876953095405	3.10278776093841	3.51261597881578	2.9092538821154	3.38014043030424	3.93400475272469	3.44180906858859	3.76204653602262	1.09624024567347	0.0629098084049998	0.265937596653966
Merged-chr8-83055073-4	chr8	83054943	83055143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 6 of 6)	intron (NM_177378, intron 6 of 6)	-110309.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	6.30307722116282	5.58778033225738	7.10000050135497	6.88714876246804	6.05938181528055	6.21604786275771	5.93559294644722	6.1627513770515	-0.74312888150082	0.0286328604351215	0.1624857189597
Merged-chr18-3329076-3	chr18	3328982	3329182	+	678.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110851, intron 1 of 4)	B2_Mm1t|SINE|B2	-1491.0	NM_001110850	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	3.37223700777122	3.90743979322824	3.76098563548468	3.23768224471342	3.40633240378758	3.61346694282029	3.79081726605165	3.65913574834401	0.0890968629545334	0.868692544690331	0.950774466256313
Merged-chr14-55794063-4	chr14	55793952	55794152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5195.0	NM_001164108	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	5.37282773291212	5.37987780822534	5.3430835591271	5.11766483648111	5.67101447297403	5.76873867669661	5.40577501960663	5.73552145315557	0.626245983451559	0.0245391521412716	0.146539719029046
Merged-chr2-155514860-2	chr2	155514757	155514957	+	648.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_144786)	promoter-TSS (NM_144786)	-11.0	NM_144786	207182.0	Mm.41757	NM_144786	ENSMUSG00000027603	Ggt7	1110017C11Rik|6330563L03Rik|Ggtl3	gamma-glutamyltransferase 7	protein-coding	3.52793161551549	3.84249750676357	3.2194032663383	3.69670680838528	3.56716536483747	3.52726967905974	3.66820169583119	3.41158239891124	-0.16508433972428	0.753597459978219	0.902798885097597
Merged-chr19-41848295-4	chr19	41848204	41848404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177603)	promoter-TSS (NM_177603)	-172.0	NM_177603	212398.0	Mm.222723	NM_177603	ENSMUSG00000047604	Frat2	-	frequently rearranged in advanced T cell lymphomas 2	protein-coding	6.32059489836182	7.09483887379919	7.06859678098367	6.3314962997946	6.37477512752772	6.75161010971132	6.69400497176077	6.76625057932883	-0.145026340190487	0.595904298629818	0.824220761703025
Merged-chr2-122148730-4	chr2	122148636	122148836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009735, intron 1 of 3)	intron (NM_009735, intron 1 of 3)	1049.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	6.49011924406304	6.41954140125876	6.47410645306985	6.24475362635853	6.78447886391394	6.74988314029794	6.94379130883952	6.46947616711439	0.509257983777314	0.0198931187485966	0.127634063404215
Merged-chr15-103365607-5	chr15	103365532	103365732	+	854.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001314041, intron 1 of 30)	intron (NM_001314041, intron 1 of 30)	1159.0	NM_010577	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	4.3965686537775	4.20246411854661	4.00468442413785	3.73789814084346	4.1318424770098	4.36508750887202	3.88300260011174	4.10041508297998	0.0866086351269281	0.848625923819177	0.942786711901439
Merged-chr2-117984777-3	chr2	117984675	117984875	+	974.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	126427.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	3.73567830909148	3.95428916937456	3.84546215782082	4.19234307303094	3.98581632583652	3.79610048874496	3.77724741851329	4.20523105840744	-0.012458819269912	0.978580973948491	0.992449975361913
Merged-chr2-48886212-4	chr2	48886127	48886327	+	629.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007396, intron 4 of 10)	intron (NM_007396, intron 4 of 10)	63040.0	NM_001177313	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	3.68051519965365	3.63445128939521	3.44708618598689	3.4997382313954	3.5380360105607	3.9050499414527	3.94959175351848	3.92199664246216	0.809054930960881	0.0892362476577849	0.325970371239443
Merged-chr6-53993511-3	chr6	53993414	53993614	+	778.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110484, intron 1 of 3)	intron (NR_110484, intron 1 of 3)	14823.0	NR_110484	320178.0	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	4930590G02Rik	RIKEN cDNA 4921529L05 gene	ncRNA	3.36812917843822	3.65124902611202	3.36854072670729	2.88607597609243	3.9771935782915	3.73052608069893	4.00874258268631	3.76236518554765	1.71494465101185	0.0020359608262354	0.0237103494192752
Merged-chr5-110434963-3	chr5	110434856	110435056	+	658.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317042, intron 1 of 2)	intron (NM_001317042, intron 1 of 2)	13547.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	3.49966946449887	3.32846845607774	3.44107531264497	3.65168790949998	3.69848872444491	3.67306213539547	3.87652380977573	3.60874105404715	0.686921879639662	0.163160877672107	0.452710867853602
Merged-chr3-89280141-1	chr3	89280041	89280241	+	704.0	f0_balb.idr	promoter-TSS (NM_010107)	promoter-TSS (NM_010107)	-496.0	NM_010107	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	3.4501801445134	3.17434318721372	3.17605799433979	3.22858419371194	3.17040994811117	3.01448571438763	3.10300262805321	3.58827413824807	-0.0780744627796049	0.892134970290859	0.959609735423941
Merged-chr9-62980426-1	chr9	62980326	62980526	+	1000.0	f0_c57.idr	intron (NM_019663, intron 1 of 13)	CpG	453.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	5.14644064976966	5.44903597331114	5.0015136710293	5.07587908546681	5.5797396850788	5.62529781157281	5.31252367893992	5.47558646093985	0.587620030275021	0.0458472097857969	0.219680817592948
Merged-chr14-106760290-3	chr14	106760181	106760381	+	871.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-273761.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	3.69897432418802	3.46278563847376	3.83953618675277	4.2119850136697	3.55198564091075	3.27001715139379	3.28740677429755	3.29644432254736	-1.56936963241981	0.00603467290729664	0.0544896591232358
Merged-chr11-94585961-3	chr11	94585857	94586057	+	963.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153807, intron 1 of 15)	B3|SINE|B2	15829.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	4.13523454751191	3.84471895294596	3.51884915172773	4.02217167673422	3.95597139912859	3.82113900306664	3.79694387277863	4.00471927428484	-0.018726790424353	0.968082610318516	0.988667404907839
Merged-chr5-143424074-4	chr5	143423978	143424178	+	977.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20258.0	NM_025841	66913.0	Mm.181880	NM_025841	ENSMUSG00000079111	Kdelr2	1110007A14Rik	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	protein-coding	5.67282455816784	5.8916111383133	5.0562469316464	5.2111958566886	5.59190560579543	5.89498878003668	5.31301523709269	5.66977853703111	0.228650271786734	0.488100374594991	0.761126159857708
Merged-chr14-106439488-1	chr14	106439388	106439588	+	662.0	f0_balb.idr	intron (NR_045938, intron 2 of 3)	intron (NR_045938, intron 2 of 3)	47032.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	3.23857730008293	3.37165100222009	3.4595083580807	3.35990524645307	3.26044592790002	3.40974250271267	3.28564015820008	3.17611375675614	-0.278352776044836	0.596376004822772	0.824677461384002
Merged-chr9-103208027-4	chr9	103207936	103208136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133977)	TTS (NM_133977)	-5971.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	6.91726036064039	7.32077079503181	7.04717094842686	7.32030988953608	7.17106590786641	6.96807697719624	7.24441148403995	6.60868077444576	-0.200017011479683	0.374046662020197	0.677410562957932
Merged-chr2-33353638-4	chr2	33353536	33353736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 1 of 16)	intron (NM_001290570, intron 1 of 16)	17858.0	NM_001290570	241308.0	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	6.35212689804324	6.23200844311396	6.93879458086653	7.14682221117073	6.17016646352194	6.0939623409888	6.47741277189004	6.42111782750313	-0.639875386614749	0.0242645453410091	0.145552509087113
Merged-chr6-72407336-4	chr6	72407238	72407438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6970.0	NM_019802	56316.0	Mm.19937	NM_019802	ENSMUSG00000053460	Ggcx	-	gamma-glutamyl carboxylase	protein-coding	6.37545023979913	6.53048144342964	6.01178584160212	6.05508008473089	6.71257754623147	6.25813213303335	6.37844833425648	6.3542988403	0.288689196145162	0.25026340902921	0.561320283324095
Merged-chr1-180568913-4	chr1	180568805	180569005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007415)	promoter-TSS (NM_007415)	14.0	NM_007415	11545.0	Mm.277779	NM_007415	ENSMUSG00000026496	Parp1	5830444G22Rik|AI893648|ARTD1|Adprp|Adprt1|C80510|PARP|PPOL|msPARP|parp-1|sPARP-1	poly (ADP-ribose) polymerase family, member 1	protein-coding	7.00477248473402	6.79796608596766	6.3254489331439	6.73167547276204	6.97732067703407	6.82638872831383	7.126861011214	6.69112087446165	0.253661066337491	0.268841718050345	0.580420535930889
Merged-chr5-96914793-3	chr5	96914695	96914895	+	933.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6477.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	5.60406372108356	5.60884720895854	5.31408785078457	4.96460745761705	3.82337302526696	3.98556657200016	4.03830413125379	4.23352021300207	-3.22071832646906	1.0133606306042e-12	1.07656710933994e-10
Merged-chr10-127324707-4	chr10	127324609	127324809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359657)	promoter-TSS (NM_001359657)	-933.0	NM_001359657	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	6.03670383020074	5.71171265054824	5.29578257329767	5.51765043503366	6.15772768221857	5.87061681069454	5.78937542566825	6.23649258837983	0.597456355149738	0.0364135900328831	0.189772467396286
Merged-chr8-10170116-3	chr8	10170012	10170212	+	770.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001319151, intron 1 of 34)	intron (NM_001319151, intron 1 of 34)	16201.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	3.37326983317288	3.15289476978486	3.3737026730337	3.40921282236941	3.5303493305984	3.48743786792028	3.47050616860883	3.58434942129137	0.623445257545764	0.217488139590431	0.524411649340314
Merged-chr15-36935397-3	chr15	36935284	36935484	+	911.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	72018.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	3.53443859424495	3.1122123371447	3.27491620318144	3.46455663433226	3.26990641452389	3.12954262232809	3.31848292584123	3.21428728456131	-0.453974979853807	0.410433907384151	0.705836076119295
Merged-chr11-87771242-2	chr11	87771100	87771300	+	920.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172449, intron 14 of 31)	intron (NM_172449, intron 14 of 31)	10659.0	NM_172449	207777.0	Mm.342019	NM_172449	ENSMUSG00000034156	Tspoap1	Bzrap1|D230016K05|PRAX-1|mKIAA0612	TSPO associated protein 1	protein-coding	3.13369786673441	3.39696206081546	2.78532722321452	2.95145658747713	3.46514078043774	3.24585182198834	3.18213747697658	3.30468945896998	0.83240920968765	0.166913515084108	0.458397140603893
Merged-chr8-103919533-3	chr8	103919440	103919640	+	761.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-182085.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	3.57219986091301	3.74434716901676	3.95144631472263	3.70797242708835	3.76194153347289	3.44460682033697	3.44512332496378	3.32967574322178	-0.732801928155438	0.156225698926004	0.442076370511807
Merged-chr4-149792443-4	chr4	149792328	149792528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18161.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	8.37327258266791	8.49731515564952	8.37461954167064	8.46790355176476	8.35492946080576	8.37353040037038	8.52418645470704	8.51108948318819	0.011945435751762	0.936234595747346	0.97690766292493
Merged-chr6-83054583-4	chr6	83054487	83054687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007517)	promoter-TSS (NM_007517)	-16.0	NM_019752	64704.0	Mm.21880	NM_019752	ENSMUSG00000068329	Htra2	AI481710|Omi|Prss25|mnd2	HtrA serine peptidase 2	protein-coding	8.69567847435892	8.72464720451078	8.50966624848461	8.6631335539476	8.62131133756777	8.50725740950751	8.58326383369118	8.37986717213517	-0.154945210024321	0.306227809711691	0.61870534395312
Merged-chr6-39056104-4	chr6	39056023	39056223	+	678.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 9 of 12)	intron (NM_011539, intron 9 of 12)	11463.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	3.3288955444756	3.62554631823081	3.82399067792287	3.37421281900763	3.8331615379695	3.63224755079569	3.6637910798248	3.67695796033833	0.513752827589715	0.300368505687108	0.612422387893833
Merged-chr13-9022808-4	chr13	9022707	9022907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26795.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	6.67192990170617	6.71950395532999	6.20143388057837	6.78161707455891	6.92126185205547	6.6717024022844	6.71226403083243	6.82462687478743	0.235922899014153	0.294995418242185	0.607094386576849
Merged-chr11-32619682-4	chr11	32619588	32619788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 18 of 18)	intron (NM_009288, intron 18 of 18)	-22867.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	5.33394188054312	6.09565287590334	5.72185397366965	5.97360756741633	5.96116827078111	5.70626149891273	5.92544711188777	5.93012145428193	0.0980607692245467	0.729162086770662	0.892476699180608
Merged-chr10-13560453-4	chr10	13560319	13560519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025748, intron 3 of 5)	intron (NM_025748, intron 3 of 5)	-7277.0	NM_001347361	56535.0	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	5.64459233600621	5.5683759801472	5.67211894216863	6.1115534720354	5.83861488992686	5.45673140234522	5.96413808278278	5.92809828145952	0.0419274414225348	0.884925542667799	0.956800874977993
Merged-chr10-117818758-4	chr10	117818606	117818806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 5 of 7)	intron (NM_024457, intron 5 of 7)	-26001.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	7.40224049023227	7.89426746245469	7.05169907066427	7.1740115102026	7.20508354811788	7.51160052320203	6.92438448178043	6.9949510004676	-0.328681610667526	0.189039742713511	0.487836866980549
Merged-chr1-134305275-3	chr1	134305192	134305392	+	851.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001144855, intron 23 of 28)	intron (NM_001144855, intron 23 of 28)	15288.0	NM_031189	17928.0	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	3.56707970032317	3.5502549093199	3.56760934045724	3.45166024061376	3.24725307413397	3.27932559874103	3.15833747199548	3.35280562784533	-0.976266296189583	0.0637958792311394	0.268263887171881
Merged-chr11-95712170-4	chr11	95712024	95712224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045780, intron 1 of 1)	intron (NR_045780, intron 1 of 1)	630.0	NR_045780	432396.0	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	5.32561686168292	5.38687467747159	4.93109504767895	5.54978976467598	5.67735434281879	5.50200633218941	5.57536077592463	5.54906666240957	0.421975780768613	0.156247602735697	0.442120775795038
Merged-chr4-132748932-4	chr4	132748851	132749051	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133888, intron 1 of 7)	intron (NM_133888, intron 1 of 7)	8220.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	5.1902570285568	6.30985742708372	5.32349936189247	4.76062293226916	5.67989026073619	5.47017538440844	5.32761105880868	5.41074966344246	-0.0967258427824751	0.812731091545774	0.927656717651261
Merged-chr9-120011742-4	chr9	120011618	120011818	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	11880.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	6.08709437260909	6.50322483004424	6.14327105175033	5.76035459344127	5.71382821506408	4.95957813141453	5.38137425351121	5.08059622745928	-1.34388871097358	6.91593224251685e-05	0.00148587123782103
Merged-chr6-29528038-8	chr6	29527967	29528167	+	985.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311083, intron 1 of 9)	intron (NM_001311083, intron 1 of 9)	-1215.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	4.72245784964644	4.87680711544068	4.64397739483032	4.00987091655213	4.85074533834986	4.85922431751767	4.77467632444719	4.99511657569961	0.594044780449646	0.133467361656047	0.406803123166862
Merged-chr1-74439696-4	chr1	74439601	74439801	+	975.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176972, intron 25 of 25)	intron (NM_176972, intron 25 of 25)	30317.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	5.00510753254977	5.08210661725041	4.90077648600326	5.02791194469852	5.03792190237183	4.96190107705458	4.98174597155742	4.82238232760823	-0.100315515511069	0.747334356438357	0.900548716872232
Merged-chr8-72492045-8	chr8	72491980	72492180	+	821.03125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177766, intron 1 of 5)	CpG	534.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	3.44621383700195	3.54259228147382	3.96649503069294	3.48064392207731	3.68402996011194	3.85257950093019	3.71690623516389	3.875600566736	0.500013881427187	0.302300037626164	0.614677894595004
Merged-chr6-122653874-4	chr6	122653769	122653969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27445.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	4.76557849017285	4.55551239751856	4.36413212088376	4.32551423543734	5.31809480380572	5.24392703066103	4.88770142145434	4.90848173442041	1.24841874289304	0.000349310971147921	0.00573687254622471
Merged-chr18-61086384-4	chr18	61086290	61086490	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-19182.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	4.98743298408366	5.5253190447436	4.95183450372575	4.42111910618897	5.40204393347645	5.19941276318303	5.09912070402301	5.05472165926603	0.329149717797497	0.388673246360367	0.689050386119166
Merged-chr5-74628003-4	chr5	74627888	74628088	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359074, intron 2 of 10)	intron (NM_001359074, intron 2 of 10)	49884.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	4.54359252721811	5.00270646399847	4.81478423394946	4.75272480767305	4.65551374882418	4.48981857354556	4.68371599084068	4.54143912654979	-0.408067958157395	0.247155748693935	0.558168726560377
Merged-chr2-32961704-4	chr2	32961601	32961801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009076)	promoter-TSS (NM_009076)	-11.0	NM_009076	269261.0	Mm.250030	NM_009076	ENSMUSG00000038900	Rpl12	E430018F03	ribosomal protein L12	protein-coding	6.90817832710687	6.67931929376749	6.88352515512825	6.3620867225783	6.88393387046114	6.80012973919895	6.80893852961623	6.89163581211557	0.200268017582279	0.36623844360599	0.670796309439317
Merged-chr4-83512409-4	chr4	83512280	83512480	+	879.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-13165.0	NM_001355549	320226.0	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	4.12416873190824	4.25662066620106	3.8646788524868	3.84069435878994	4.55326846728973	4.09917411112016	3.90534680614757	4.45232732089343	0.655510432609321	0.1421571098769	0.419579876176779
Merged-chr9-90303357-4	chr9	90303246	90303446	+	996.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-32577.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	5.02389951915182	5.3027546820104	5.05976165980695	5.04301281199844	5.06752403576521	5.42377360517327	5.16540442043059	5.12356376623885	0.158275525315193	0.604071621945025	0.828350269166784
Merged-chr3-96246697-3	chr3	96246606	96246806	+	957.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178216).2	promoter-TSS (NM_178216).2	6.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	3.35956082213082	3.2445102289027	3.35998664121866	2.53375247359989	4.43770391263731	4.34379995011904	4.36809992647541	3.99326599182559	3.90802192978	1.25790767071428e-08	6.56490955223851e-07
Merged-chr7-31059332-4	chr7	31059258	31059458	+	927.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144556)	promoter-TSS (NM_144556)	-577.0	NM_144556	243914.0	Mm.389870	NM_144556	ENSMUSG00000036560	Lgi4	Lgil3|clp	leucine-rich repeat LGI family, member 4	protein-coding	4.27431399935887	4.45026908700902	4.66152382460222	4.36420724790153	4.06957815913157	3.9757106028105	4.11440250967898	4.51786858443528	-0.624532184930359	0.132102324056909	0.404600315148309
Merged-chr12-17692153-4	chr12	17691979	17692179	+	942.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	1270.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	4.27717009427296	4.36881758538742	4.71074790076805	4.33364680192276	4.19098558001159	4.25616264537998	4.16298307458858	4.77223008314634	-0.140979719901521	0.733349809432101	0.894448261374724
Merged-chr2-129595790-1	chr2	129595690	129595890	+	1000.0	f0_balb.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	328.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	7.01335895262672	6.89928798118492	7.29783710568706	6.9625907025936	7.00719182159256	7.49434071048293	7.08825339697881	7.32278019624906	0.258501914006768	0.218924771794303	0.526323042913726
Merged-chr15-33211578-4	chr15	33211459	33211659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018755, intron 2 of 8)	intron (NM_018755, intron 2 of 8)	128430.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	6.99357210549649	6.78195095949595	7.19091569372293	7.14790990545624	7.03856412462448	6.72862528075659	6.98410582388604	6.9646372466441	-0.141474459207429	0.489720785502827	0.761935283416117
Merged-chr4-35223208-4	chr4	35223108	35223308	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	intron (NM_001081343, intron 1 of 10)	2672.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	4.66822714455784	5.30034633706796	4.92900272941123	3.93853317418624	5.20795196760905	4.71988694029323	4.76372920610343	4.58105772208088	0.0832238229917378	0.856587771049927	0.946035795055979
Merged-chr13-52275810-6	chr13	52275687	52275887	+	742.311096	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	179046.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	2.97155689243729	3.28851759854583	3.47041909688094	3.08575048168596	3.32766697932035	3.47770072167212	3.40342791986751	3.61488705334919	0.874101390528135	0.110635660383859	0.367403922294612
Merged-chr10-42278177-2	chr10	42278078	42278278	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	CpG-1005	-1436.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	7.30580894472728	7.02692686898655	6.7455762121142	7.24726712143089	7.54605952760272	7.27192601097319	7.19665903097976	7.61025234736938	0.425807049750558	0.0468190541078329	0.22246551751278
Merged-chr5-65199579-4	chr5	65199459	65199659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153391)	promoter-TSS (NM_153391)	-137.0	NM_001359880	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	8.57441090886367	8.64422175096163	8.46382127378515	8.63876668028123	8.50775693201712	8.49567441551626	8.69734288400065	8.44301531129438	-0.0577472323871066	0.702869074382878	0.880424292242087
Merged-chr16-35802304-4	chr16	35802178	35802378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152314, intron 3 of 8)	intron (NR_152314, intron 3 of 8)	31892.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	5.72646526127306	5.93819841107397	6.27199196377474	6.46163678144671	6.39217021814611	5.85099420562685	6.51818009264592	6.37347103229505	0.249715969022855	0.381154171001435	0.683465744746471
Merged-chr8-122718497-2	chr8	122718397	122718597	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-19388.0	NM_009824	12398.0	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	2.71580503204698	2.86838822304899	2.78421092658185	2.73807210108887	3.12375831971476	3.07886045801778	2.9597684144828	2.91014795926336	1.10746298121434	0.062874723172585	0.26583664512631
Merged-chr13-24614582-4	chr13	24614511	24614711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286101)	promoter-TSS (NM_001286101)	5.0	NM_178658	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	4.80304977257444	5.25742734426847	4.91856690872005	5.19058523287902	4.82924767087939	4.98027743153504	5.06461780403835	5.05369141999376	-0.176282358117439	0.588362085084659	0.819675135431917
Merged-chr4-53120549-4	chr4	53120433	53120633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	39362.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	8.5938796098169	8.87408692946887	8.72368241303874	8.4259787498485	8.64055470611096	8.81444594386019	8.56974827098249	8.74725275369247	0.0429062473169781	0.796818540490991	0.921379983040993
Merged-chr7-104219372-4	chr7	104219240	104219440	+	796.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013616, intron 1 of 7)	intron (NM_001013616, intron 1 of 7)	545.0	NM_001013616	94088.0	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	3.84514380590155	3.80047649653664	4.13777760346449	4.22504966299774	4.03475616462634	4.17089005578656	4.03014155587322	3.89697947614215	0.0193350965814268	0.964974883353751	0.987604923538227
Merged-chr13-114818192-4	chr13	114818040	114818240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013826)	promoter-TSS (NM_013826)	-97.0	NM_013826	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	7.15697711372612	7.20202964725859	7.46724158511428	7.40602100306122	7.18783209911457	7.43591610917097	7.3260916576201	7.22132093576192	-0.0370626191921948	0.843193684091278	0.940459539910433
Merged-chr8-71476665-5	chr8	71476572	71476772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001294259)	TTS (NM_001294259)	7478.0	NR_122114	66498.0	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	5.87637684010643	5.88558118423422	6.18118027011857	5.69070641487994	5.22607354924956	5.35969075403174	5.50515742668026	5.37960274997296	-0.921920095798657	0.00106039995623734	0.0141107138689507
Merged-chr5-96997510-4	chr5	96997407	96997607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080708)	promoter-TSS (NM_080708)	-182.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	8.11409595695546	8.25297356180491	8.40151677424024	7.97987793139231	8.09120712394533	8.11008897343537	8.2470892548312	7.83638207214658	-0.141726305941816	0.43156655269913	0.721710551668303
Merged-chr10-85184480-4	chr10	85184399	85184599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007771, exon 1 of 13)	5' UTR (NM_007771, exon 1 of 13)	555.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	5.26170849955713	5.37825705311854	5.32456734547008	5.30001645920715	5.31204531909752	5.37339590555206	5.54282349340973	5.43628754448248	0.175276367129038	0.527264774229393	0.784247818720592
Merged-chr14-103478158-4	chr14	103478051	103478251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35190.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	7.16406805181484	6.95234698026358	7.2294043056827	7.3464447386144	6.85971887427937	6.5659448108669	6.96619583830086	6.93257888310327	-0.476352278781098	0.0213041335225612	0.133510029935057
Merged-chr1-23466389-4	chr1	23466312	23466512	+	837.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83237.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	3.72377767115672	3.58325914755179	3.6187653551112	3.66928051509274	3.8039850528818	3.61932678038235	3.54935731411947	3.90975527488596	0.249776804753984	0.593805041254007	0.823105141799785
Merged-chr18-20750422-3	chr18	20750329	20750529	+	883.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR10_RN|LTR|ERVK	-4025.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	3.45005138015255	3.27652165627329	4.00241902771275	3.24293346785252	3.4846275515187	3.63104575599755	3.98292067200639	3.8712849909601	0.707024675029227	0.199961045369616	0.50185984431534
Merged-chr15-89181926-4	chr15	89181768	89181968	+	876.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027081)	TTS (NM_027081)	-1080.0	NM_138749	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	3.87299241366768	4.07429258118498	3.92315719419607	3.85326556306909	3.96488469431779	3.88777366646105	3.58023467637855	4.05879679154509	-0.119724449284199	0.790854528898667	0.918885370783943
Merged-chr2-131160146-4	chr2	131160064	131160264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026091)	promoter-TSS (NM_026091)	-83.0	NM_026091	67326.0	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	7.75808159337555	8.13452587346993	7.59836128887259	7.82682797954155	7.92222052272039	7.92063171345584	7.88578433194475	7.72996401401983	0.0263236513218564	0.886213225884355	0.957247996194402
Merged-chr4-24619897-4	chr4	24619806	24620006	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355618, intron 9 of 9)	RMER15|LTR|ERVL	123455.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	5.33108370496419	5.18955792124876	5.30270544699412	5.51524396449514	5.17642785850411	5.2524656783796	5.44141508537702	4.84125541479598	-0.284320958083219	0.361145832694578	0.666459236871415
Merged-chr11-50226568-2	chr11	50226468	50226668	+	799.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_145926, intron 1 of 14)	intron (NM_145926, intron 1 of 14)	1233.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	2.86164618362594	2.96505033219048	2.98129458218831	2.63081511081883	2.57729772944105	2.90686177133945	3.02408765836268	2.72961478277947	-0.202490488816427	0.758628536829245	0.905219520105318
Merged-chr17-73971086-3	chr17	73970972	73971172	+	868.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20876.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	4.58400384275888	4.11352365430347	4.69470967625432	4.31286274218881	4.40327806524783	4.46080165056736	4.63672795456577	4.58172466948618	0.198969013967267	0.606961092940683	0.829739641131306
Merged-chr8-71568449-4	chr8	71568351	71568551	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011977)	promoter-TSS (NM_011977)	-420.0	NM_011977	26457.0	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	5.55227903673143	5.05896024092219	4.77063663340582	4.76695257077695	4.9633373743268	5.02836326330694	5.10560831499074	4.99534589134733	-0.0838126675545406	0.813052053342545	0.927766714304227
Merged-chr11-11777403-3	chr11	11777302	11777502	+	924.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31560.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	4.21083343643491	4.26100310084743	4.29806179126456	4.20166253290296	4.14157627982891	4.19318270877649	4.23656651638565	4.06722161938297	-0.202901266053365	0.604491033692895	0.828485859893348
Merged-chr5-64810692-4	chr5	64810611	64810811	+	907.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	7188.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	3.9094760817678	3.46491211308676	3.75814169472811	3.75008071822605	3.80887221222559	4.17091606996649	3.4470846734426	4.16558416030027	0.563836591890832	0.265112792081214	0.576956662317123
Merged-chr2-103966550-2	chr2	103966450	103966650	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142337, intron 1 of 3)	MIRc|SINE|MIR	-3007.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	2.64707245949477	2.51619366481447	2.57873977230237	2.70939960609036	2.79562912215229	2.8180475615766	2.76529722189373	2.9940570735319	1.07271656939837	0.0975517865320379	0.342253480558159
Merged-chr6-22356206-4	chr6	22356106	22356306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138587)	promoter-TSS (NM_138587)	-125.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	8.60413125645973	8.63633631301505	8.79992650111303	9.01987398627827	8.6408798732394	8.72583117836143	8.95222565729839	8.58588822873167	-0.0611442608876842	0.723752683546303	0.88974079900073
Merged-chr9-31131918-4	chr9	31131796	31131996	+	823.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011176)	promoter-TSS (NM_011176)	-97.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	4.55064230819943	4.13966100343976	4.40260223445395	4.28416395181967	4.13661868702637	4.10976071468241	4.3423134229018	3.92796110642062	-0.518340380151741	0.208684633907331	0.513019394794843
Merged-chr19-5809076-4	chr19	5808956	5809156	+	972.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6384.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	4.95140323987384	5.33093945128388	4.91776647209537	4.70534638154951	4.82105866423318	5.05584173883729	4.44248661221688	4.76660532234655	-0.406293887586288	0.269809287442321	0.58159527847952
Merged-chr17-56183955-4	chr17	56183830	56184030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080837)	promoter-TSS (NM_080837)	-10.0	NM_080837	28106.0	Mm.294870	NM_080837	ENSMUSG00000019579	Mydgf	D17Wsu104e|Il25|Ly6elg	myeloid derived growth factor	protein-coding	7.28197442962787	7.42958504053754	6.63103533661141	6.97895585780669	7.38312891494473	7.27017699949661	7.36521745957923	7.21426599173634	0.267755319385479	0.230639604087431	0.540182829763392
Merged-chr11-74493330-4	chr11	74493242	74493442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	96816.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	6.71445031202493	6.91199671248854	6.32929731039399	6.39368268045705	6.88407762074323	6.70558350571257	6.63744174173732	6.50729507092742	0.133840227628584	0.571997735683113	0.811024219202571
Merged-chr11-70497895-4	chr11	70497784	70497984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7390.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	6.54403916415177	6.53421748913134	6.44909070591963	6.37502681818635	6.27040725210108	5.96701203360558	6.46481597964622	6.16624157308484	-0.354323642650511	0.122720672772612	0.388252277087734
Merged-chr4-152125514-2	chr4	152125414	152125614	+	896.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207689, intron 7 of 9)	CpG	3411.0	NM_019585	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	2.48537345309512	2.42796049392871	3.05605834532001	2.45283628359785	2.60942267963334	2.94405841860479	2.82074246491919	2.94711107844877	0.961877872016708	0.182780983897964	0.479460757430375
Merged-chr13-34314223-4	chr13	34314123	34314323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 1 of 10)	intron (NM_001033167, intron 1 of 10)	30959.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	5.42757198876225	5.75321012725521	5.24619673626076	5.59578008236363	5.59634611437626	5.51565954543538	5.25241537845081	4.82307490478274	-0.327337361952494	0.318639315741798	0.630502275525004
Merged-chr14-56887644-3	chr14	56887553	56887753	+	870.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360643, intron 1 of 24)	intron (NM_001360643, intron 1 of 24)	810.0	NM_001360643	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	3.86858252850254	3.71506970998238	4.17731325587374	3.30650011128146	3.78892269022941	3.94094303916418	3.90071319066339	3.86682260474872	0.228000282381787	0.654231701474373	0.855565200155145
Merged-chr18-65512916-9	chr18	65512983	65513183	+	885.4074099999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	-67147.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	4.32357631483187	3.79207384760085	4.08562157959074	4.24704309263979	3.77708412378464	3.59999584512396	3.77606496478655	3.89454671380423	-1.02096941129862	0.0281996092790479	0.160862230648346
Merged-chr11-108425139-4	chr11	108425034	108425234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029606)	promoter-TSS (NM_029606)	-132.0	NM_029606	76380.0	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	7.85890255891883	8.20866207586079	7.85268560701291	7.6437903314907	8.13620248687556	8.10354099235198	8.00956038819819	7.75335237997446	0.140184230548699	0.470624462754031	0.749281674465736
Merged-chr17-29773525-4	chr17	29773423	29773623	+	878.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56506.0	NM_001163741	68597.0	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding	4.20749942561482	4.22420887611647	4.01181308324629	3.74246112646731	4.48739903020195	4.24000568663115	4.54096804910835	4.11118748427146	0.787888244090748	0.0640917620307863	0.268953397570413
Merged-chr2-58865389-4	chr2	58865288	58865488	+	875.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 11 of 13)	RMER1B|Other|Other	110204.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	4.43402739164785	4.85519816329827	4.63585158110697	4.2021635483084	4.43669209305463	4.69145485919108	4.3254813362614	4.387680656529	-0.179085672607127	0.654589429144691	0.855659697629251
Merged-chr14-61529709-4	chr14	61529603	61529803	+	851.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	27183.0	NM_025697	66674.0	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	3.79352817058971	4.23257603673207	3.89534280932947	3.83020116631399	3.89120197376518	3.68140433602935	3.87886404235434	3.68226246697365	-0.444335668878327	0.337980117960524	0.647718939249696
Merged-chr3-88651823-4	chr3	88651704	88651904	+	941.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_181817)	TTS (NM_181817)	1338.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	4.99367531885049	5.10181137511886	4.53485062910087	4.82638123411863	4.66574215084067	4.84194258413484	4.68515173164579	4.99109607415913	-0.171053353335955	0.62435769135529	0.839393596001854
Merged-chr4-136179619-3	chr4	136179475	136179675	+	805.416687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177733, intron 2 of 6)	intron (NM_177733, intron 2 of 6)	-1207.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	2.40552880818904	2.35351193317542	2.49068049811361	2.0779576636062	3.44471910541468	3.09582061441159	2.90460874128346	3.14014926210611	6.45431094546666	6.52096588179888e-11	5.13446715155489e-09
Merged-chr2-162931332-6	chr2	162931209	162931409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026499)	promoter-TSS (NM_026499)	-199.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	6.96741661832047	7.13113935316018	7.43063106719523	6.81522929057833	6.8820876061686	7.2922278201046	6.95901916384175	7.03932467368646	-0.0680198209093514	0.760057918635327	0.905851390428209
Merged-chr11-46806994-4	chr11	46806882	46807082	+	968.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3817.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	4.98951691496127	5.37329063600457	5.18750951275221	5.13362527325915	4.93442488201291	5.12943763923689	5.03497733178586	4.87583020325741	-0.356043141787914	0.252646956417075	0.56392980999125
Merged-chr8-71487858-4	chr8	71487757	71487957	+	969.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032544)	promoter-TSS (NM_032544)	-246.0	NM_032544	70359.0	Mm.142112	NM_032544	ENSMUSG00000007610	Gtpbp3	2410009F13Rik|AI607903	GTP binding protein 3	protein-coding	4.81661175742087	4.64027524719916	4.61147856252785	4.75504827651777	4.7726953405336	5.26151121810999	5.09542264883816	5.17591895827475	0.731029918408311	0.0288544026885073	0.16320643763308
Merged-chr6-72552272-4	chr6	72552159	72552359	+	852.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271395, intron 1 of 9)	MER31A|LTR|ERV1	2612.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	3.66762073936552	3.82654596206965	4.11804866305553	4.13127467181104	3.87873660702326	3.72465152129235	3.92053327251943	4.1154235453742	-0.119162313361952	0.796233285720919	0.921052599307061
Merged-chr18-69402193-4	chr18	69402107	69402307	+	892.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	56047.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	4.0107099701113	3.4701990431851	4.1141924640947	4.30845366313807	4.11301677763172	4.55264358046855	4.67605961193114	4.3379895530309	1.00343315708898	0.0432243184305738	0.211585431646366
Merged-chr5-145205310-4	chr5	145205194	145205394	+	977.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001167944, exon 1 of 4)	5' UTR (NM_001167944, exon 1 of 4)	735.0	NM_001359188	22757.0	Mm.332842	NM_016683	ENSMUSG00000055991	Zkscan5	AI132486|AI326970|Zfp95|hKraba1	zinc finger with KRAB and SCAN domains 5	protein-coding	4.4934405458156	4.78302571294232	4.4057077557961	4.56791040556563	4.68464215658386	4.74880324414236	4.51579718708774	4.5743414075857	0.134183695849294	0.706072770007873	0.881879743016467
Merged-chr8-22433200-4	chr8	22433124	22433324	+	948.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21884.0	NM_020560	57312.0	Mm.289402	NM_020560	ENSMUSG00000031533	Mrps31	1500002D03Rik|AA960481|Imogen38|Imogen44	mitochondrial ribosomal protein S31	protein-coding	4.4931287153421	4.58495662830846	4.37019507702704	4.467240131429	4.65907280962945	4.03121257788034	4.16680843232873	4.32349078358243	-0.342040124077975	0.402268175000465	0.699852037942905
Merged-chr6-4967399-4	chr6	4967301	4967501	+	867.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	64081.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	4.29787613292774	4.16012129115053	4.29853968055102	4.48757649144843	4.18004085953677	4.185546187712	4.43994404280558	4.11001611809521	-0.230515685978813	0.563492859150873	0.806370289937675
Merged-chr11-100850592-4	chr11	100850470	100850670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113563)	promoter-TSS (NM_001113563)	15.0	NM_001113563	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	6.69378321633182	6.81393914107511	6.05897201171805	6.42187298604905	6.93605264750834	7.17864210627587	6.93129702103975	7.03286991651348	0.696986513423915	0.00293321618859906	0.0314101692625684
Merged-chr16-9132312-4	chr16	9132220	9132420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	302220.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	5.10926121390762	5.59684270867514	5.31115860003849	5.50781819783528	5.29774969140876	5.65782563112623	5.18909330788502	5.55953261481701	0.0472766498795675	0.87597619485949	0.953371302804582
Merged-chr4-141065305-4	chr4	141065216	141065416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4771.0	NM_001145958	230872.0	Mm.80685	NM_172122	ENSMUSG00000040860	Crocc	-	ciliary rootlet coiled-coil, rootletin	protein-coding	5.10640200241064	5.27251430191352	4.62104379848953	4.83656339887048	5.39572196078614	5.31572164792577	5.40614270885808	5.48104857557055	0.783660742013791	0.0131738860493588	0.0958209723183432
Merged-chr2-150750837-4	chr2	150750719	150750919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355068, intron 1 of 13)	intron (NM_001355068, intron 1 of 13)	1738.0	NM_172117	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	5.41199826761726	5.3462282261946	5.44274689418816	6.02172884145194	5.61294714296248	5.32632052030733	5.83468164392748	5.49652186201171	-0.0467413395598233	0.883371258273402	0.956137021268247
Merged-chr2-32361682-4	chr2	32361588	32361788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1322.0	NM_001252538	68379.0	Mm.170508	NM_028412	ENSMUSG00000039205	Ciz1	0610038H21Rik|2900056O04Rik|LSFR1|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding	5.34033496121926	5.59569524467604	5.01121379687909	4.90049850264133	5.19939841047928	5.32970417183739	5.22483979278821	5.59882639925572	0.204055941135812	0.537836687865903	0.791242329033072
Merged-chr14-76052177-4	chr14	76052081	76052281	+	853.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-41316.0	NM_026816	68705.0	Mm.20415	NM_026816	ENSMUSG00000067995	Gtf2f2	1110031C13Rik|AI326315	general transcription factor IIF, polypeptide 2	protein-coding	4.02311462714375	4.17790121605749	4.66853242401769	3.74128070138912	4.63839198207603	4.09385914164421	4.74166466411018	4.36187153554237	0.696675877477469	0.134379102068724	0.408014289628717
Merged-chr16-90198386-2	chr16	90198286	90198486	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22356.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	3.11056165899963	3.29689202718637	3.11095348860063	2.76057862857411	3.2652505240767	3.60808512508331	2.96986084116917	3.10936871972685	0.677432855354523	0.271220863321495	0.582992988776974
Merged-chr10-118622296-4	chr10	118622208	118622408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-65783.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	5.63918032467396	5.37661580485775	5.56024420019316	5.81667430129396	5.71087532542063	5.28550008974075	5.86598760190302	5.8272246087276	0.125369216248229	0.664219907374117	0.860892763519835
Merged-chr4-155840463-3	chr4	155840318	155840518	+	941.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024263, intron 1 of 9)	intron (NM_024263, intron 1 of 9)	738.0	NM_024263	74761.0	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	3.45111519502837	3.2706277741398	3.2384201081223	3.66365444551918	2.9982937559635	3.09168723341806	3.16786408635814	3.05033898123163	-1.38482203556455	0.0176081955558469	0.117375327914368
Merged-chr10-19575481-1	chr10	19575381	19575581	+	656.75	f0_balb.idr	Intergenic	Lx6|LINE|L1	-16468.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	3.73192985991549	3.49113332160777	3.68720522980527	3.19428713211809	3.26309653118179	3.42949630597251	3.17514057307514	3.43047094312036	-0.717662717439863	0.1958820719821	0.496764527794702
Merged-chr6-72534274-4	chr6	72534155	72534355	+	879.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10136.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	4.44898482443855	4.18427081630777	4.07244607954941	3.95321416432404	4.05123680499265	4.09470901620924	3.90172704371778	4.33325829080208	-0.163752779058497	0.704584808720418	0.881307709007534
Merged-chr2-156352356-3	chr2	156352272	156352472	+	669.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027585, intron 8 of 12)	intron (NM_027585, intron 8 of 12)	-39668.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	2.29007262237997	2.31592323087266	2.29025172906154	1.98590140838538	3.07024642718455	2.8593285875583	2.66595562512596	3.30859796834241	6.29658368189654	3.74377631156317e-10	2.6125319027525e-08
Merged-chr5-76303974-4	chr5	76303874	76304074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305222)	promoter-TSS (NM_001305222)	-472.0	NM_001305222	12753.0	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	7.51996542570918	7.51922101490273	7.47423279394655	7.60887198096106	7.62928261091325	7.65153124912338	7.82077723918999	7.40017809335347	0.129754836004987	0.465251162626002	0.745807997310006
Merged-chr7-137437576-4	chr7	137437463	137437663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023140)	promoter-TSS (NM_023140)	-10.0	NM_001348093	30926.0	Mm.267692	NM_023140	ENSMUSG00000031068	Glrx3	PICOT|Txnl2	glutaredoxin 3	protein-coding	7.98243811153295	8.09581642755717	7.82505839312452	7.94119323233982	7.90204703286416	7.81202975052426	8.19010082449607	7.65571347646104	-0.0763888113957195	0.676392520562819	0.86710149162778
Merged-chr10-80152770-5	chr10	80152615	80152815	+	929.5599980000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347117, intron 4 of 7)	intron (NM_001347117, intron 4 of 7)	3033.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	4.89191396136431	4.31671858691409	3.94270927395214	3.76984434214239	4.48288694553827	4.32677354652636	3.81100770682901	3.88327473769179	-0.348236447657923	0.51104153833314	0.775132664017528
Merged-chr6-120479466-4	chr6	120479383	120479583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 11 of 12)	intron (NM_008359, intron 11 of 12)	14324.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	7.93071068920848	8.25910573945913	8.02125141610943	7.97868137645825	7.85047615990756	7.83206271131178	8.00255221073947	7.8979224675792	-0.202147576303451	0.226896959376041	0.535593906991684
Merged-chr16-4200214-4	chr16	4200125	4200325	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025432, intron 1 of 30)	RSINE1|SINE|B4	13179.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	4.65172276924575	5.59649324463679	5.26424686982769	5.11074405696215	5.35592345437962	5.17184947290695	5.40753503971436	5.34876788423616	0.227283983860562	0.501344396193722	0.769176893061019
Merged-chr2-57124184-4	chr2	57124086	57124286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001139509)	promoter-TSS (NM_001139509)	-183.0	NM_001139509	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	7.49956307059624	7.58313197836119	7.7305469102731	7.99072491488225	7.72887346168648	7.47988786848057	8.20125676025891	7.87703573559549	0.163439351040559	0.449143702186684	0.73430918582637
Merged-chr5-35729314-4	chr5	35729202	35729402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194344)	promoter-TSS (NM_194344)	-26.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	8.1794202209921	8.33630470548174	8.45377277655004	8.54689716439386	8.11179184753759	7.95079388120218	8.24154216476303	8.2173538046213	-0.32601079965138	0.0530354775038503	0.240156005677623
Merged-chr4-46563962-4	chr4	46563842	46564042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	2498.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	8.72522006305097	8.41843160258603	8.88519496305143	8.64731287937314	8.12220360004408	8.17611913026846	7.9814684018663	8.15507864514306	-0.718056820566134	1.98613388529283e-05	0.000505980758129056
Merged-chr7-67528382-7	chr7	67528326	67528526	+	956.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028144, intron 8 of 8)	intron (NR_028144, intron 8 of 8)	116810.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	3.76262819730275	3.43042578050661	3.6125145503735	3.82758770447143	3.23462503082177	3.73030528768138	3.69903453480544	3.49944779817343	-0.396238895889142	0.447563936016801	0.733082010437389
Merged-chr10-10472451-4	chr10	10472336	10472536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127353)	promoter-TSS (NM_001127353)	-122.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	7.44343506339921	7.20108671577657	7.36538934168254	7.58051534343717	7.44825689111196	7.2951735072794	7.71225863633717	7.65915214310164	0.168437516783743	0.386260859764577	0.687552275421561
Merged-chr9-70208279-3	chr9	70208190	70208390	+	779.1777950000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	940.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	3.56491336694362	3.60719292091852	3.66716088699943	3.55802419077458	3.55154408709061	3.24090272236825	3.32297819292765	3.75894831683767	-0.357340429660585	0.489025647393077	0.761571656414145
Merged-chr2-60962423-1	chr2	60962323	60962523	+	665.0	f0_c57.idr	intron (NM_020296, intron 1 of 13)	CpG	781.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	3.02591428808887	2.69804026030459	2.96637866900147	3.08472816694099	2.80076793099136	3.0118383274894	2.9557952460879	3.18894254353262	0.15318352965133	0.805499725846107	0.925182413943856
Merged-chr19-16872747-3	chr19	16872644	16872844	+	827.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008023, exon 1 of 1)	exon (NM_008023, exon 1 of 1)	1086.0	NM_008023	14240.0	Mm.7971	NM_008023	ENSMUSG00000056829	Foxb2	Fkh4	forkhead box B2	protein-coding	2.92751489380507	2.83203567407584	3.25028077100302	2.96451743453307	2.87338310361632	2.90600485143338	2.79085163390115	2.79817443915773	-0.693645689400069	0.264711554028881	0.576566406596513
Merged-chr9-58552847-4	chr9	58552765	58552965	+	886.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11925.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	4.43307170370466	4.89362650024377	4.11792564836146	3.9980990073302	4.20979215511213	4.43733921427331	4.28811844940584	3.89445785680147	-0.445427004104672	0.340184755813991	0.649256220246255
Merged-chr11-98785905-4	chr11	98785820	98786020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9596.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	7.19549002551791	7.4348112064914	6.96947539950308	6.86040072731996	7.27961263196264	7.10689557540622	7.16065444596053	6.89725409713977	-0.00586637067226524	0.978530532829418	0.992431461005174
Merged-chr9-100440451-7	chr9	100440344	100440544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46029.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	5.91729417039896	6.35598893327465	6.12563980314465	5.72419031028824	5.6746857493091	6.04809907830087	5.49792432684939	5.86825109010054	-0.418250653199026	0.143427285246599	0.4217205360446
Merged-chr13-117223296-4	chr13	117223206	117223406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010330, intron 1 of 8)	MIR|SINE|MIR	2733.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	6.21710113337966	5.99386357067567	6.09897996326599	6.05682093634848	6.16304753472745	6.31490246037002	6.39343819142893	5.94044484774573	0.188639120266958	0.427053800523344	0.718322718232651
Merged-chr1-125435683-7	chr1	125435589	125435789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205385)	promoter-TSS (NM_001205385)	38.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	8.57430514124826	8.5850679830416	8.76474132689073	8.6299032504547	8.57209363182562	8.76281183340821	8.88510381759617	8.76326994384684	0.134890662725905	0.376812822052218	0.679494401442451
Merged-chr5-136173772-4	chr5	136173707	136173907	+	972.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3151.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	4.78437767355583	4.46729163899274	4.88744061155063	4.01031962200876	4.8241252512076	5.09013866254817	4.6893824934449	4.26611632785898	0.379474839476571	0.384416639507768	0.685951673034199
Merged-chr2-22727337-4	chr2	22727236	22727436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-46991.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	6.71007017213153	5.81175898437051	6.91402826025724	7.04698408605049	6.71148601467662	6.30553807914901	6.86636318661757	6.96996469770345	0.0438091636215556	0.886560807323793	0.957444179369024
Merged-chr11-103412699-4	chr11	103412560	103412760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183034)	promoter-TSS (NM_183034)	4.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	6.89176529896132	6.96968460993637	7.00732937510434	6.6728096898018	7.02185523669436	6.88406095171036	6.83126660814371	6.88809178600408	0.0475617755796156	0.813446461330947	0.927859774864195
Merged-chr11-119603103-6	chr11	119603045	119603245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001306081, exon 1 of 33)	5' UTR (NM_001306081, exon 1 of 33)	240.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	4.64298732443904	4.48060752378122	4.90069667303447	4.44454253144304	5.07417330185873	4.64872857964717	4.45022016044593	5.08200231924025	0.485935824475699	0.199613345034048	0.501474545095065
Merged-chr16-21630772-4	chr16	21630667	21630867	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	63898.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	5.58095090143833	5.68186802794978	5.65863638524352	5.77050302501507	5.63632426797137	5.21283837280859	5.2931422746598	5.65463154949659	-0.352349396546039	0.209590506618559	0.514127672419699
Merged-chr7-4723865-4	chr7	4723768	4723968	+	984.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177887, exon 4 of 5)	exon (NM_177887, exon 4 of 5)	1214.0	NM_001142792	330460.0	Mm.361851	NM_177887	ENSMUSG00000046456	Tmem150b	A630041N19|Tmem224	transmembrane protein 150B	protein-coding	4.69805105670882	4.63150579310798	4.73720431178244	4.61505509006079	4.90885676082865	4.75127290464565	4.82259623133485	4.7713266750757	0.327366668414319	0.320079241405025	0.631859556610888
Merged-chr11-98775422-4	chr11	98775324	98775524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145434)	promoter-TSS (NM_145434)	-47.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	7.66930962162244	7.8821471107188	7.26735077593197	7.22709486529263	7.48785383849501	7.77337446523724	7.13959385113252	7.19411101689911	-0.15125628987301	0.525138959904673	0.783229855070132
Merged-chr13-9129068-4	chr13	9128956	9129156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 3 of 17)	intron (NM_172585, intron 3 of 17)	35175.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	7.59434370706906	7.97008332181826	8.26531770141209	8.0570816383708	7.92509524939104	8.06782512306942	7.68932382008916	7.76253340556445	-0.163506760334709	0.410785246822593	0.706211701654116
Merged-chr16-87638285-4	chr16	87638204	87638404	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_Mur|LTR|ERVK	-60650.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	5.43707803307546	5.65917334165852	5.77252349520228	5.85462943582267	5.32531739739832	5.35733897712025	5.62551131773733	5.3739805983704	-0.480005493914041	0.0864686698764011	0.320676989169612
Merged-chr11-20108368-4	chr11	20108313	20108513	+	901.804199	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146243, intron 1 of 8)	Lx8b|LINE|L1	4538.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	4.49647283655095	4.10241010528967	4.36778441894581	4.06180250111969	4.66771926869395	4.70977660673127	4.47625370097347	4.78583281220856	0.94694720880291	0.0121547272016641	0.090735325378841
Merged-chr10-26772415-4	chr10	26772337	26772537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176837)	promoter-TSS (NM_176837)	-75.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	7.6952033980779	7.84786648346519	7.51995464182742	7.82663417730968	7.76522823851662	7.77104785031041	7.94387360901305	7.40595331328763	0.00317648444664785	0.986693298969187	0.995137687953634
Merged-chr10-117363275-4	chr10	117363168	117363368	+	985.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013391, intron 3 of 9)	B2_Mm2|SINE|B2	13705.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	5.24817787291431	4.86835865638568	4.46463433840623	4.82603520188705	5.16961497322409	5.07227156827151	4.90991055364979	5.21722137456002	0.433112748744882	0.209410458466913	0.513940748725158
Merged-chr4-63399309-7	chr4	63399180	63399380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 1 of 21)	intron (NM_001045514, intron 1 of 21)	-1040.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	6.98143417975939	7.22011014492548	7.51115375774675	6.8252684132913	6.65634964965665	6.70189733123206	6.67163172876334	6.58788161114221	-0.694934984754904	0.00234699429900444	0.0264539520520724
Merged-chr1-165780693-4	chr1	165780646	165780846	+	830.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7935.0	NM_001113393	12503.0	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	3.7890754027097	3.93775647276543	3.84106439245081	3.85495070901314	3.86195011042277	3.79800344277156	3.72156541891297	4.0258735485081	-0.00124133768007395	0.997752404411565	0.999049532170228
Merged-chr4-62291327-4	chr4	62291237	62291437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290518)	promoter-TSS (NM_001290518)	-210.0	NM_001290518	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	5.93454444846772	5.89739325518838	6.07026800676337	5.7922316129931	6.59127529521454	6.51219237734253	6.19806526914989	6.02263046707245	0.679633154901862	0.00672076793317637	0.0590825916192411
Merged-chr1-87756332-3	chr1	87756269	87756469	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029846, intron 1 of 17)	CpG	358.0	NM_001205392	77040.0	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	5.43941635014358	5.27949192012654	5.01027907710527	5.18635766034791	4.98277587633612	5.44624398657131	4.94956342463624	5.2699252149428	-0.122615306663334	0.698830057319703	0.878505428649175
Merged-chr5-45474407-4	chr5	45474306	45474506	+	811.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18968.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	4.14803568105613	4.05352984563204	3.74299704500041	4.17535276467409	4.04472360416188	4.08376387941629	4.1723825708428	3.85473557023369	-0.0174095405033914	0.968048321507383	0.98865348920078
Merged-chr4-117137349-4	chr4	117137241	117137441	+	903.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3378.0	NM_001313916	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	4.44870725121772	4.58132403504606	4.37028351443659	3.13093650216284	4.46561244152526	4.22793929986919	4.12939077480602	4.04498583214532	-0.0865678240926387	0.879934590427884	0.955031322803
Merged-chr10-4612872-4	chr10	4612781	4612981	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007956, intron 1 of 8)	intron (NM_007956, intron 1 of 8)	892.0	NM_007956	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	5.34879947128353	5.49170671528723	5.12789110034108	5.96891286080812	5.02241987589974	5.08302064488636	5.32293647196216	4.97826651652888	-0.794817365842979	0.0190731377825683	0.123959721897866
Merged-chr11-72215628-2	chr11	72215524	72215724	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_026068)	promoter-TSS (NM_026068)	-32.0	NM_026068	67279.0	Mm.159496	NM_026068	ENSMUSG00000020801	Med31	3110004H13Rik|CGI-125|l11Jus15	mediator complex subunit 31	protein-coding	4.70752643339525	4.53721920881952	4.20189802271724	4.64156474040503	5.12582819783918	4.91796793142119	4.75945181164731	4.62659751362621	0.703479119501115	0.0566401794460731	0.249267976637354
Merged-chr7-123330754-4	chr7	123330631	123330831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 2 of 19)	intron (NM_001316713, intron 2 of 19)	39184.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	6.15698825504241	6.07678989095466	6.30984846869566	6.54449263793641	6.19695829374758	5.99153154225432	6.0649661172755	6.23179529613476	-0.262334046068952	0.283356089171932	0.595430079153571
Merged-chr10-77032644-3	chr10	77032516	77032716	+	890.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199271)	promoter-TSS (NM_001199271)	-123.0	NM_001199271	20509.0	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	3.79614509853425	3.41186386167352	3.5857059104084	3.95993451137391	3.89427996713328	3.51584242253611	3.78066011569781	3.79445654048122	0.119899417189162	0.811978600008793	0.927374358493403
Merged-chr11-50042802-3	chr11	50042707	50042907	+	911.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	17476.0	NM_001290750	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	3.6361304168213	3.91267929779748	3.74186531590307	3.71406909032706	3.81994311683615	3.44263491154831	3.62260436815179	3.78917027049585	-0.212331336703506	0.65725318295284	0.857138591231224
Merged-chr6-38913103-4	chr6	38913005	38913205	+	983.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5881.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	5.84404517335677	4.95311450689699	5.92757547778724	6.26850699036579	5.24182385829284	4.91831493152445	5.29797221464631	5.60733268376476	-0.936940835648031	0.0132330983835076	0.0961869943242729
Merged-chr17-24173602-4	chr17	24173505	24173705	+	830.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3927.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	3.90465370481301	4.32276650652322	3.90521506346266	3.23360130309638	4.32464591743866	4.08410975890763	4.13203281238197	4.35460168032876	0.851512183959599	0.100094910017689	0.347137770422387
Merged-chr7-127875779-4	chr7	127875671	127875871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362191)	promoter-TSS (NM_001362191)	-129.0	NM_001362191	244219.0	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	6.75387217356834	7.15864024027035	6.82814883786038	6.69163547677372	7.06414750879357	7.23702036247036	6.97729692640781	6.93200829429353	0.264972092621571	0.207944376937251	0.512083891711065
Merged-chr19-21785272-4	chr19	21785172	21785372	+	929.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031997, intron 2 of 24)	intron (NM_031997, intron 2 of 24)	6932.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	4.3602219407873	4.51192764878804	4.57328382322707	4.59792599140208	4.51263798652813	4.34166219039577	4.66321353782575	4.60880800120806	0.037040852987601	0.918488726858975	0.970029958144947
Merged-chr7-83722669-4	chr7	83722548	83722748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360087, exon 2 of 19)	exon (NM_001360087, exon 2 of 19)	9750.0	NM_001360087	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	6.54262036148647	6.32325094414055	6.63716104879468	6.83365292114481	6.47302282745062	6.34890987662549	6.67579138271734	6.40278265703337	-0.185762518023573	0.420190926228008	0.713162823854942
Merged-chr1-172046532-2	chr1	172046432	172046632	+	801.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	11064.0	NM_010916	18071.0	Mm.2474	NM_010916	ENSMUSG00000051251	Nhlh1	Hen1|Nscl|Tal2|bHLHa35	nescient helix loop helix 1	protein-coding	3.79348693678994	3.59009711604802	3.70482219684502	3.59614880450013	3.00589808172861	3.50798442657836	3.19169605774774	3.20049935788784	-1.60713623414761	0.00442832382091533	0.0434105028575861
Merged-chr7-116409670-4	chr7	116409587	116409787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011083, intron 2 of 32)	intron (NM_011083, intron 2 of 32)	33771.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	6.35371068021238	6.6892712685935	6.65560815280317	6.66363823118851	6.14340254025125	6.3183729774054	5.87916208321766	5.87939855386308	-0.800303413863037	0.00077713573950232	0.010983335784188
Merged-chr13-97523967-4	chr13	97523841	97524041	+	716.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36059.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	3.6316692720041	3.74895417707661	4.03976113389743	3.68287810013826	3.76499803951452	4.20426024491226	3.93200148870571	3.94675424566594	0.535841122064099	0.241428660483128	0.552028609846725
Merged-chr1-140351863-4	chr1	140351755	140351955	+	805.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081027, intron 2 of 27)	Lx8|LINE|L1	105598.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	4.17255923421869	4.19050089078995	4.07980895897479	4.56346016734658	4.08277221734479	3.67055296909835	4.10951635114299	4.25749006268575	-0.586390974926459	0.195645208683299	0.496467883204978
Merged-chr11-76587547-4	chr11	76587439	76587639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9800.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	7.46246918737191	7.6591949035827	7.51047119093667	7.45994405113992	7.47777646598829	7.56238052815535	7.44569254091701	7.4199245096561	-0.0624151436931083	0.715814147167925	0.886371813543908
Merged-chr4-144899333-2	chr4	144899233	144899433	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	6196.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	2.76129102129014	2.77128291696254	2.76163224892002	2.73641735518469	2.84327614152234	2.5178223081149	2.81002080045652	2.49281009443748	-0.360358417933915	0.594367911987775	0.823411261518897
Merged-chr2-120404147-4	chr2	120404020	120404220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110496)	promoter-TSS (NM_001110496)	-4.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	7.25672596560341	7.18949875407259	6.49612143806619	6.6667521156036	7.0024176587854	7.15509422429947	6.87928512353404	6.74047910556818	0.0215975507033353	0.930390315422397	0.974875274343831
Merged-chr6-67158960-4	chr6	67158871	67159071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108008.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	7.36870429846698	7.49430646119729	7.23464620626121	7.55198637994455	7.05714827665273	7.0742966863142	7.31350490393614	7.22959066770213	-0.347267018962063	0.0651749805340285	0.271673104909324
Merged-chr15-97163233-4	chr15	97163124	97163324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155278, intron 2 of 3)	MLT1A0|LTR|ERVL-MaLR	4020.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	6.43205157010844	6.34242691806003	6.79588882289103	6.77089836661214	6.4252527913052	6.57415192796193	6.3649158880457	6.29961202291823	-0.278390557390586	0.226530906681922	0.535191297355037
Merged-chr2-90964956-3	chr2	90964859	90965059	+	690.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001244891, intron 2 of 14)	intron (NM_001244891, intron 2 of 14)	24562.0	NM_017368	13046.0	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	3.96916859449848	3.44071178369938	3.96979044303616	4.06595893226168	3.58258055798585	3.67611780017631	3.86183204447482	3.55703109875287	-0.641043477769015	0.20046484464938	0.502514075622407
Merged-chr11-45944391-2	chr11	45944320	45944520	+	816.666626	f0_balb.idr|f0_c57.idr	TTS (NM_001290737)	TTS (NM_001290737)	515.0	NM_028185	72290.0	Mm.249827	NM_028185	ENSMUSG00000044847	Lsm11	2210404M20Rik|AV079530	U7 snRNP-specific Sm-like protein LSM11	protein-coding	4.15244827265666	4.10652551930453	4.36816624172318	4.07280502530182	3.97553007750117	4.23052651897908	4.18052974282411	4.36530990080354	0.0418237617275183	0.91850883432633	0.970036801069971
Merged-chr4-42954557-4	chr4	42954443	42954643	+	780.174988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355439, intron 3 of 4)	intron (NM_001355439, intron 3 of 4)	4147.0	NM_001355440	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	3.88030870460805	4.03381698543434	3.66931133048796	3.75800773512516	3.80123674812316	3.60124797788156	4.0437520786598	3.92637080149056	0.0385926057944115	0.933326835135412	0.975967471696899
Merged-chr18-4797956-4	chr18	4797853	4798053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14533.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	6.1181675900629	5.67912747802908	5.65342490620821	6.13125914750013	5.62417435879587	5.49941801808679	5.93101028954402	5.70195794567445	-0.373002446783198	0.183834955322555	0.481012966940989
Merged-chr16-76977164-4	chr16	76977032	76977232	+	889.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33749.0	NR_040573	76601.0	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA	3.73260406968633	3.90450484521332	4.54707389480871	4.39966188223654	4.01878140119579	4.28524998870613	3.94690538042154	4.11025564447327	-0.257376015526453	0.585879104937	0.818478990587386
Merged-chr10-77581656-4	chr10	77581563	77581763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145925)	promoter-TSS (NM_145925)	8.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	8.24768611510363	8.29953732268849	7.97766172582202	7.94254596484022	8.1236187460625	8.21715414998175	8.17574839116246	8.12471026752384	0.0487375587992032	0.7722529401332	0.910810383351782
Merged-chr7-142387426-2	chr7	142387326	142387526	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009983, intron 1 of 8)	intron (NM_009983, intron 1 of 8)	444.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	5.36517952747173	5.06395847173053	5.17945893292578	5.32612427853257	5.51900359135299	5.56756601824772	5.18701490695324	5.41887206052048	0.338074571651884	0.246404150410338	0.557673692994975
Merged-chr16-20227728-4	chr16	20227635	20227835	+	864.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001145930, exon 28 of 31)	exon (NM_001145930, exon 28 of 31)	13623.0	NM_198599	208158.0	Mm.326383	NM_198599	ENSMUSG00000041205	Map6d1	A330066I15Rik	MAP6 domain containing 1	protein-coding	3.99520023903445	4.18355550924118	4.04794873265164	4.39819577233376	4.28030516961287	4.53383166049358	4.12979725072615	4.40448041968308	0.386883546744525	0.351978986840677	0.659209734772345
Merged-chr7-16406246-4	chr7	16406181	16406381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198631, intron 1 of 13)	intron (NM_198631, intron 1 of 13)	5085.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	5.76982670899347	5.89357220576906	6.29028218109197	6.1150346718345	5.50024662354256	5.67480190238851	5.74151788098905	5.63665762065196	-0.654385477302382	0.0134874411986242	0.0974741168724617
Merged-chr10-80148926-4	chr10	80148831	80149031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305799)	promoter-TSS (NM_001305799)	659.0	NM_001347117	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	7.46116813285515	7.70399673425795	7.52967246488382	7.30996875271237	7.90473657264535	7.91340955435887	7.78982289049608	7.87298501619741	0.486175508834645	0.00564733465064845	0.0519997993879645
Merged-chr11-29495901-4	chr11	29495797	29495997	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176841, intron 25 of 31)	intron (NM_176841, intron 25 of 31)	19136.0	NM_026465	67939.0	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	6.27913056331165	5.96458002112093	5.96049111905165	6.20711472040563	5.73962214873692	5.44908538460709	5.23984961191217	5.89025973482849	-0.813369929872678	0.00375316820607966	0.038095856628428
Merged-chr8-117367582-4	chr8	117367451	117367651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	L2b|LINE|L2	18381.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	6.52336906868785	6.01720939667721	6.79446461437977	6.84559499528648	6.02589605372167	5.8604385307085	6.56756412208069	6.36840065691881	-0.527557433136097	0.0677732181097276	0.277838185299054
Merged-chr3-51481258-4	chr3	51481141	51481341	+	880.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2725.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	4.34621852240429	4.66269947276364	3.79503381144316	4.335525161901	4.93395386624108	4.38181756235257	4.49500271674923	4.43148280581081	0.598503961327136	0.177857311047743	0.473525548646618
Merged-chr7-68129239-4	chr7	68129147	68129347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	134986.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	7.11407925946209	7.57075874009065	7.41890331279705	7.28887939233331	7.35974670043239	7.61489743505765	7.50100530446687	7.04747783033339	0.0496697479836582	0.810766641860087	0.926854276252049
Merged-chr1-39835017-4	chr1	39834937	39835137	+	823.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12293.0	NR_040465	73426.0	Mm.396239	NR_040465	ENSMUSG00000101634	1700066B17Rik	-	RIKEN cDNA 1700066B17 gene	ncRNA	3.77103601741915	3.83426908682138	4.00329879333438	3.63382247448732	3.96220040007299	3.39942807620675	3.59575751803342	3.81917522720242	-0.261206838402691	0.601018595939477	0.827064333308382
Merged-chr7-102246114-4	chr7	102245991	102246191	+	990.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	4027.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	4.61623648582535	4.9800367630484	4.83419967087831	4.25532075205876	4.70357228477254	4.53380918147745	4.59533485390668	4.25257815543633	-0.332054168025128	0.412240735371667	0.707432453421569
Merged-chr2-27366387-3	chr2	27366291	27366491	+	953.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	61217.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	4.02452068288381	3.66505707572973	4.72749694073019	4.88931793010376	3.79259954653729	3.861830229471	4.28420455374393	3.8575699430143	-1.14366199903092	0.0348098066190873	0.184697249024869
Merged-chr7-101649061-4	chr7	101648955	101649155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14713.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	5.58139009156298	5.58704262701195	5.60842617878986	5.80763732933845	5.43235273772395	5.43174351216924	5.58016032223224	5.4685530600221	-0.317203560984957	0.23663990831717	0.546655618028751
Merged-chr10-98878464-4	chr10	98878353	98878553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-36189.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	6.16650391754664	6.23678515643832	6.02456964254007	5.97605695600286	6.34147073265321	6.20014420972672	5.62162335189654	5.93068853835197	-0.0585816089788259	0.826752291004658	0.933537467224337
Merged-chr13-91421768-3	chr13	91421695	91421895	+	628.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33710.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	3.28846041111249	3.17651683797012	3.45206704337002	3.81066599135883	3.11802725562073	3.07020670590895	3.38620851047292	3.16592613523958	-1.01646249442838	0.0860521293840999	0.319623427306259
Merged-chr5-34637183-4	chr5	34637090	34637290	+	959.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356979)	promoter-TSS (NM_001356979)	22.0	NM_001356978	68294.0	Mm.34564	NM_026660	ENSMUSG00000001082	Mfsd10	0610009O03Rik|Tetran	major facilitator superfamily domain containing 10	protein-coding	4.97036982202671	4.86700041371156	4.57917629570291	4.87012607230834	5.06791889422618	4.9648036771075	5.10417743196257	4.86237318296252	0.34324390494021	0.289045237073595	0.601015159197868
Merged-chr9-25482577-4	chr9	25482489	25482689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026189, exon 2 of 8)	exon (NM_026189, exon 2 of 8)	992.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	6.99626289193003	6.37218092418378	6.99748898781155	7.28344821972069	6.60014023118061	6.28360257642231	7.07497061072114	6.31777469155939	-0.490647987632247	0.084567794559784	0.316446065331575
Merged-chr6-120172798-2	chr6	120172698	120172898	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	L1MD3|LINE|L1	-21025.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	4.33012946102048	4.1101036045173	4.41255921025918	4.71887120306564	4.06861969349929	4.06319264613021	3.86673221175692	4.44858229426069	-0.728507008024031	0.0988494449943274	0.344693043736366
Merged-chr7-6331334-4	chr7	6331235	6331435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033249)	promoter-TSS (NM_001033249)	-901.0	NM_001033249	213011.0	Mm.333558	NM_001033249	ENSMUSG00000030443	Zfp583	BC056221|Znf583	zinc finger protein 583	protein-coding	6.47858014917581	6.23389081607278	6.67946832956738	6.43857168059811	5.8448003210733	6.55211260705156	6.68702575099987	6.57118491157111	-0.0305504323961913	0.909469438555544	0.966320459266825
Merged-chr3-95228753-4	chr3	95228655	95228855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019914)	promoter-TSS (NM_019914)	-78.0	NM_019914	56772.0	Mm.331208	NM_019914	ENSMUSG00000053192	Mllt11	AI839562|Af1q|Zfp692	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 11	protein-coding	6.36739270319131	6.54370688115424	6.4405601572454	6.57129165611416	6.47866192006255	6.36785789031476	6.78135838040527	6.63009327054922	0.118294936229279	0.587313691480707	0.819118136850477
Merged-chr13-9454909-4	chr13	9454787	9454987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	178362.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	7.09547519895535	6.8384365516908	7.11887438723529	6.99856534909856	6.89618251978841	6.535847331518	6.57720395838283	6.68595078968828	-0.451781238894944	0.0301439663781757	0.167796776635033
Merged-chr1-132133661-4	chr1	132133528	132133728	+	946.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008795, intron 1 of 15)	L2|LINE|L2	6057.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	5.25681590368916	5.32315758057143	4.99993943203712	5.37341277494095	4.6089439228608	5.06574119922492	4.82586691387388	5.36541591047268	-0.505810181306759	0.142548525034523	0.420143331819144
Merged-chr14-17410927-4	chr14	17410785	17410985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-250075.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	5.1571299391537	5.43805957775807	5.46287150293622	5.79093322969795	5.1527419798547	4.89792963554161	5.51355910734888	5.43166154897205	-0.406737423162959	0.213306716171677	0.518649953897104
Merged-chr2-166665689-3	chr2	166665595	166665795	+	940.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	RMER15|LTR|ERVL	48137.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.25924727710497	4.46984226153033	4.65966426385112	3.95397130658006	4.3630735286836	3.79935753408717	3.78921452447255	3.80150008166838	-0.964192971627444	0.0524342719652709	0.238571915380722
Merged-chr2-148489114-4	chr2	148489020	148489220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-45585.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	6.98084868125773	6.810051626743	6.56337072171762	7.19789460755158	6.88082862682911	6.75810130128456	6.8181036560867	6.80653014176427	-0.14904014948337	0.500267436584356	0.768850577358824
Merged-chr18-80256154-4	chr18	80256068	80256268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164424)	promoter-TSS (NM_001164424)	-58.0	NM_001164424	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	8.13788149357706	8.33351114618359	7.96095084631039	8.1895806646432	7.80552790393722	8.13857210549982	8.22325082159384	7.98367637003074	-0.157613594924852	0.376832446960999	0.679494401442451
Merged-chr17-29246799-3	chr17	29246693	29246893	+	822.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9003.0	NM_001360239	240058.0	Mm.39905	NM_153166	ENSMUSG00000024008	Cpne5	A830083G22Rik	copine V	protein-coding	3.62681993775713	3.74528472256145	3.67931565104805	3.69942636811889	3.287954428298	3.68994353397537	3.66406757325901	3.57120668140165	-0.435599452970551	0.37617802450946	0.679007344082742
Merged-chr1-178369058-4	chr1	178368970	178369170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-31255.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	7.62571322378825	7.64560395755851	7.49112092127222	7.72553313658821	7.57979106507558	7.89523057200459	7.80882970807146	7.38649204219012	0.0647262535552106	0.730709539765553	0.893244019160978
Merged-chr6-113351812-4	chr6	113351700	113351900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7878.0	NM_133926	52163.0	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding	6.17647848679262	6.12699006985604	6.19755506647018	6.56312049439202	6.03151792544308	6.270932606861	6.26077356158639	6.37709652816206	-0.0960120839469786	0.696042309696294	0.877034567568863
Merged-chr10-78364258-4	chr10	78364169	78364369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12569.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	7.33562104770837	7.30426312602329	7.5001171268692	7.60472098089737	7.31672745533109	7.09245719177111	7.47201032636297	7.21360006757413	-0.221878623352173	0.245153560095046	0.556239369290278
Merged-chr11-76736135-4	chr11	76736018	76736218	+	874.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356321, intron 7 of 8)	intron (NM_001356321, intron 7 of 8)	27460.0	NM_016810	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	4.59163825416672	4.24526197829817	4.69763340832677	4.92700577627599	3.73998422986914	3.94017803199921	4.19325382571421	4.51400602043336	-1.24492406414709	0.00682395059228514	0.0597885252595106
Merged-chr15-38691490-4	chr15	38691399	38691599	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025494, intron 12 of 12)	intron (NM_025494, intron 12 of 12)	29595.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	3.70227213243068	3.71746856829781	3.96012371300373	4.13064126790729	4.10781768061164	3.82076611197496	3.89615358982379	3.75645059386181	0.0159558409284702	0.972796894104911	0.990200064716473
Merged-chr17-45570098-2	chr17	45569998	45570198	+	631.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008302, intron 6 of 10)	intron (NM_008302, intron 6 of 10)	3163.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	3.65393545337955	3.55055796794236	3.30881107851853	2.92594182534796	3.61920514115349	3.55297260037645	3.42095996862245	4.04119191678753	0.941203610877796	0.103595142739731	0.353670338262288
Merged-chr8-88757208-2	chr8	88757113	88757313	+	588.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	60185.0	NM_001128171	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	3.11239220060263	2.94134789280336	3.1636950666826	2.79832069797947	2.68510286468234	2.71756923405199	2.74741571686279	2.75473316256492	-1.32825064063858	0.0432456775919814	0.211631769358518
Merged-chr2-126483489-3	chr2	126483398	126483598	+	944.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 2 of 27)	intron (NM_001359975, intron 2 of 27)	8055.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	3.34326788646245	3.23496043437469	3.79731387117787	3.55829798624378	3.58312110047638	3.39433237722261	3.44598477995289	3.34202525158751	-0.175501738908162	0.742157542998541	0.898417179766546
Merged-chr6-116193543-4	chr6	116193456	116193656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177412)	promoter-TSS (NM_177412)	-182.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	7.04726981215413	7.10968528729008	6.56145440599543	6.8831135634963	7.27577685646069	7.5561850037014	7.1836622017899	7.01881081938336	0.484803102037102	0.0270378057506749	0.156441798762472
Merged-chr6-87597638-1	chr6	87597538	87597738	+	804.333313	f0_balb.idr	Intergenic	Intergenic	-6895.0	NM_021381	58182.0	Mm.333226	NM_021381	ENSMUSG00000049409	Prokr1	EG-VEGFR1|Gpr73|Pk-r1|Pkr1	prokineticin receptor 1	protein-coding	3.76799450150146	3.89233965890444	3.90822562892948	3.96479632462011	3.32024485793056	3.54936187249559	3.70287610440416	3.29876854601996	-1.34186474268316	0.00802374720629749	0.0673295153520719
Merged-chr11-69834294-3	chr11	69834166	69834366	+	749.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198862, exon 1 of 7)	exon (NM_198862, exon 1 of 7)	583.0	NM_198862	216856.0	Mm.151293	NM_198862	ENSMUSG00000051790	Nlgn2	NL2|NLG2	neuroligin 2	protein-coding	3.95883207922804	3.3586842453869	3.53615897664542	3.48081187846503	3.45684769361187	3.59552595520496	3.57625923733369	3.58877354471572	-0.138745317427314	0.786027654290873	0.916755352451623
Merged-chr1-75236461-4	chr1	75236357	75236557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159885)	promoter-TSS (NM_001159885)	34.0	NM_178055	56812.0	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	7.61214209622667	7.81972269049275	7.8114130345403	7.70937579978942	7.93193952533382	7.95770789315749	8.11728460584445	7.72724198051103	0.261597445629118	0.128315696997457	0.398585626397538
Merged-chr7-89404291-4	chr7	89404203	89404403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008055)	promoter-TSS (NM_008055)	-63.0	NM_008055	14366.0	Mm.86755	NM_008055	ENSMUSG00000049791	Fzd4	Fz4	frizzled class receptor 4	protein-coding	8.1589807484609	8.0506377973873	8.33748585505361	8.41875377430787	8.07286649177065	8.07209766547744	8.31429242117246	8.0984064500678	-0.143376672055259	0.400700525468936	0.698422085421392
Merged-chr1-33876542-4	chr1	33876404	33876604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 3 of 6)	MIRb|SINE|MIR	31117.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	6.60555528578142	6.6936065226619	6.77054602776622	6.84383646409218	6.56747602896784	6.94622018129638	6.57300880828831	6.39514865325422	-0.153067463409401	0.485931153524721	0.759714246975224
Merged-chr15-4821979-4	chr15	4821859	4822059	+	890.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-76778.0	NM_001166066	223825.0	Mm.159281	NM_001166066	ENSMUSG00000022155	Mroh2b	4930455B06Rik|Heatr7b2|SPIF	maestro heat-like repeat family member 2B	protein-coding	4.24334711388737	4.11929318674919	4.46485266440884	4.65102633045684	4.43066079249093	4.63524361476806	4.36136482542894	4.33424307981672	0.0933670898508347	0.815308116118415	0.928718235748118
Merged-chr4-134480961-4	chr4	134480874	134481074	+	710.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12654.0	NM_019641	16765.0	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	3.9527543310731	4.16944196263365	3.90354180866165	3.790152030717	3.86662072132589	4.12446388640091	4.02955683027547	3.73965317142084	-0.0275899727445346	0.950599528405977	0.982312550074733
Merged-chr17-74528358-4	chr17	74528241	74528441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007566)	promoter-TSS (NM_007566)	46.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	9.22947901888239	9.24742231631371	9.33943061735157	9.29891838202871	9.26156700964437	9.42719649948058	9.50065384790767	9.24652645054209	0.101102084710445	0.47341358845964	0.7511674042147
Merged-chr9-109021606-4	chr9	109021503	109021703	+	786.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 9 of 13)	intron (NR_153430, intron 9 of 13)	-16964.0	NM_001284332	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	4.39133109809271	4.44170860621619	3.83858264784857	3.83818695052144	4.37438890024271	3.90161774099108	3.98395443751521	3.99833811462046	-0.171047596778747	0.718779552731432	0.887684154524562
Merged-chr12-69871781-4	chr12	69871690	69871890	+	909.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201519, intron 2 of 30)	intron (NM_201519, intron 2 of 30)	-21315.0	NM_178628	73991.0	Mm.474462	NM_178628	ENSMUSG00000021066	Atl1	4930435M24Rik|Adfsp|Fsp1|Spg3|Spg3a	atlastin GTPase 1	protein-coding	4.57247600883699	4.5666307841136	4.45275006953667	4.88061051690029	4.09349416319217	4.00707778637032	4.69478974429561	4.36292199976933	-0.746124657090034	0.0740906784533197	0.293250398992191
Merged-chr5-122091287-2	chr5	122091187	122091387	+	822.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9664.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	3.27891417147111	2.89545713052124	2.86429515452436	2.67577440339394	2.82247884903536	3.23144582619489	3.10464071163528	3.17177923927651	0.608198019935116	0.336565265911928	0.646508677974502
Merged-chr11-116110304-4	chr11	116110194	116110394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172570)	promoter-TSS (NM_172570)	-59.0	NM_172570	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	5.76382726482507	5.89111220220632	5.52995310143326	5.58576646008964	5.5502639920637	5.67762647899054	5.80459587670003	5.76074628241173	0.000927399905399025	0.997208335967252	0.998908860902246
Merged-chr4-135972631-4	chr4	135972532	135972732	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011942)	promoter-TSS (NM_011942)	-38.0	NM_011942	26394.0	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	4.43291337601518	4.79532333024453	4.67733778972992	4.44107257045053	4.75729879476079	4.51802511340161	4.69122131412291	4.23880863869279	-0.0326332051647278	0.931617887539339	0.975349664377662
Merged-chr4-101265289-4	chr4	101265188	101265388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146145)	promoter-TSS (NM_146145)	-6.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	8.21528229958909	8.44935378370163	8.04374637064639	8.28335884514549	8.40055538382623	8.42972397126584	8.53360451630465	8.10521154108907	0.150006825313553	0.391934713570124	0.691623810217842
Merged-chr11-67657895-3	chr11	67657803	67658003	+	842.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109657, intron 5 of 13)	intron (NM_001109657, intron 5 of 13)	-37423.0	NM_009038	19674.0	Mm.439726	NM_009038	ENSMUSG00000020907	Rcvrn	CAR|S-modulin	recoverin	protein-coding	3.3908153502641	3.91683427282524	3.64980760706515	3.30027878254205	4.19277805170103	4.17921850351776	3.94548581331107	3.96091489036557	1.43613929479116	0.00321106854185211	0.0336578210970392
Merged-chr12-112678684-4	chr12	112678535	112678735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001100460)	promoter-TSS (NM_001100460)	-205.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	5.05370806783986	5.00630553763381	4.89173914521694	4.74938643244757	4.76170534107411	4.83951714369493	4.64252420637054	4.66089861331957	-0.392024745288758	0.24265531653017	0.553464375790719
Merged-chr17-72917537-4	chr17	72917442	72917642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029999)	promoter-TSS (NM_029999)	-763.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	5.46157769969837	5.23258340491011	5.2175103165149	4.90685553546991	5.2547928472296	5.52221286458391	5.83422372250555	5.88036720079346	0.768898702370944	0.0154680685416966	0.107184740141104
Merged-chr10-81494812-4	chr10	81494737	81494937	+	866.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134009, intron 1 of 13)	intron (NM_134009, intron 1 of 13)	1526.0	NM_134009	103425.0	Mm.302791	NM_134009	ENSMUSG00000020238	Ncln	3100002P13Rik|AW120537	nicalin	protein-coding	4.31980902408218	4.72700370716924	4.08969476237501	4.16348882912842	4.16015020252774	4.26527203357478	4.07259496732841	4.08730435638652	-0.492437778353312	0.246938093763254	0.558168726560377
Merged-chr6-83502420-4	chr6	83502344	83502544	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149734, intron 1 of 6)	intron (NR_149734, intron 1 of 6)	4525.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	5.34373418098713	4.95799109268402	4.8267789295404	5.27114619597274	5.53225694833846	5.16399166157283	5.52494895589038	5.15821213030962	0.43487883942783	0.176070707864549	0.471068221483845
Merged-chr8-70943419-4	chr8	70943312	70943512	+	904.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4_19-int|LTR|ERVK	12097.0	NM_001357655	665828.0	Mm.482151	NM_001357655	ENSMUSG00000074252	Gm10654	EG665828	predicted gene 10654	protein-coding	4.42426525546046	4.12386050191712	3.96909513849944	4.31602485900692	4.04563946592306	3.97764069586809	4.36558921399362	4.45973967871974	0.00173946537321934	0.99673958991187	0.998689854593707
Merged-chr3-87017234-4	chr3	87017147	87017347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-17907.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	6.20379402821538	5.94446220589602	5.84971037176402	5.79956812927616	6.04608084464196	5.95189468738755	5.99857487627652	5.91590384326872	0.057328145896194	0.816291715598039	0.929288123801486
Merged-chr10-24163431-4	chr10	24163334	24163534	+	635.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	14117.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	3.87232685363063	3.75888507759349	3.82471424174281	3.41563202746376	3.98757160995326	3.66983799492485	3.65390179171073	3.8705479044168	0.278334369963749	0.565949421074722	0.807783748011785
Merged-chr17-87746449-4	chr17	87746366	87746566	+	989.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_199251, exon 2 of 2)	exon (NM_199251, exon 2 of 2)	51528.0	NM_199251	210741.0	Mm.312046	NM_199251	ENSMUSG00000050138	Kcnk12	mntk1	potassium channel, subfamily K, member 12	protein-coding	4.25153867901272	4.51639057742609	4.00357258807378	4.34925817013479	4.415152779858	4.66630059617713	3.8749922043651	4.05485972196027	-0.0153776337526385	0.972704437536357	0.990162593092505
Merged-chr17-36271819-4	chr17	36271721	36271921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178281)	promoter-TSS (NM_178281)	183.0	NM_024468	79263.0	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	6.10884194095078	6.96771220311981	7.15671127772039	6.66558268860807	6.44030809299418	6.45995176504828	6.16679199086201	6.46320487169999	-0.567103261228419	0.037636300914395	0.193913446455716
Merged-chr1-183979990-4	chr1	183979894	183980094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54004.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	7.78238055209315	7.87829698650686	8.12332062242818	7.85099200183468	7.9132060192197	7.9121390401559	8.03545768342677	8.08729885776287	0.0983635145729345	0.558004158560596	0.802963980746693
Merged-chr3-19955745-3	chr3	19955650	19955850	+	800.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1304.0	NM_001276250	12870.0	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	3.46607440553266	4.42583773386622	3.654194010951	3.63408649493773	3.76212083878239	3.77444974719384	3.8028670198341	4.05147940897617	-0.00786905131422747	0.988224999893043	0.995397313897641
Merged-chr15-96474850-4	chr15	96474800	96475000	+	796.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14057.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	3.12962205025978	3.2997997929249	3.47833624589471	3.30892290543884	3.39518294134173	3.30576775244998	3.4126046747861	3.42447200018805	0.272064487573787	0.600433106221913	0.826786119085537
Merged-chr16-91611426-4	chr16	91611323	91611523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7576.0	NM_001099738	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	7.38280184430784	7.88087770922028	7.2192481764131	7.53783119049829	7.70080962175711	7.83732754624941	7.53748881467424	7.50607976285321	0.156145683299195	0.450359303177577	0.735291845521361
Merged-chr19-9991867-2	chr19	9991763	9991963	+	758.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011913, intron 5 of 11)	MIR|SINE|MIR	9217.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	3.00830807561448	3.10655744433173	2.83500704297652	2.6185264752728	2.71428063480683	2.66562758113537	2.62725248553773	2.8335672036748	-0.887624348155454	0.18817780544217	0.486764836776109
Merged-chr1-89939638-3	chr1	89939526	89939726	+	793.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8450.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	3.85289805026834	3.83137834199937	3.45629340749001	3.48465372666579	3.33881332095119	3.38273574994595	3.55336385063954	3.39507904413212	-0.819728719132067	0.115252811524936	0.375535814673078
Merged-chr6-37417721-4	chr6	37417612	37417812	+	804.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	24436.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	4.30030307658271	4.20891118912472	4.47483651403954	4.33158644656794	4.87570645916518	4.38134051709734	4.32742763092287	4.47195271142196	0.499672291432601	0.200222006601096	0.502259964838292
Merged-chr2-22861441-4	chr2	22861353	22861553	+	968.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 10 of 13)	intron (NM_019456, intron 10 of 13)	-34069.0	NM_019501	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	4.97071303496163	4.65315708238427	4.44941598858115	4.99752870291213	4.89645871155013	5.14248496631651	4.80918921664885	4.86522346143489	0.261144504875174	0.459776678607112	0.742247719638375
Merged-chr8-128694689-4	chr8	128694601	128694801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010578, intron 1 of 15)	MTC|LTR|ERVL-MaLR	9047.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	5.51994444681549	5.51268292318156	5.8538856394134	5.79692117761744	5.9479489858337	5.63884657616136	5.88942131983558	5.78035434455359	0.227872696797754	0.388587876755436	0.688981838974675
Merged-chr13-21721952-4	chr13	21721873	21722073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178200)	promoter-TSS (NM_178200)	-71.0	NM_178200	319186.0	Mm.277425	NM_178200	ENSMUSG00000114279	Hist1h2bm	H2b-291b	histone cluster 1, H2bm	protein-coding	8.02093154655035	7.67896459423616	8.32379533149647	8.21658052582001	7.98087638323443	8.07327599409674	8.05521015342748	7.91959234289468	-0.0990845406648114	0.602245395472041	0.827520655656238
Merged-chr7-73593076-4	chr7	73592944	73593144	+	888.0125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34649.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	4.83854995725879	4.5596340472019	4.51845268215724	4.31042304048926	4.57725109980153	4.27145365908196	4.37090684490127	4.51553783186155	-0.25006928072466	0.517885411961264	0.779126927276672
Merged-chr16-36720393-4	chr16	36720308	36720508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285791, intron 5 of 6)	intron (NM_001285791, intron 5 of 6)	26430.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	5.36129597235033	5.43544450286435	5.67966089616487	5.5151826335353	5.22427226980995	5.27423793779098	5.67389802804009	5.41733779902239	-0.174415063322595	0.545427308879451	0.795911485069713
Merged-chr10-93452381-1	chr10	93452281	93452481	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-1015.0	NM_001313897	16993.0	Mm.271071	NM_008517	ENSMUSG00000015889	Lta4h	-	leukotriene A4 hydrolase	protein-coding	3.06205575696749	2.99830153230243	3.11729884035627	2.7782988381218	2.9231267116759	2.70112193890118	2.99378777217381	2.94374329233893	-0.39395518404698	0.527230589770088	0.784237720957866
Merged-chr13-46728036-4	chr13	46727924	46728124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175749)	promoter-TSS (NM_175749)	-175.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	7.63920243812745	8.10774332591388	7.56761859625977	7.52778057730746	8.11379448640648	8.08052262469839	7.85046148389528	8.13822735013142	0.41551930123385	0.035561739968599	0.187222565771073
Merged-chr1-78678663-3	chr1	78678553	78678753	+	898.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028817, intron 2 of 15)	ORR1C2|LTR|ERVL-MaLR	20213.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	4.11174326529912	3.96602189036185	4.19108955394947	4.40762426857604	3.37368905684048	3.40962140892626	3.4879578002916	3.29018605300829	-2.62027414225827	1.39771599397224e-06	4.73752508261666e-05
Merged-chr7-16491918-3	chr7	16491812	16492012	+	887.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15132.0	NM_008718	18142.0	Mm.145821	NM_008718	ENSMUSG00000001988	Npas1	MOP5|bHLHe11	neuronal PAS domain protein 1	protein-coding	3.35112104205897	3.3081864884768	3.53998967390362	3.4817295532026	4.00887066089946	4.01990574333598	3.68962072014793	3.84927293063088	1.4405577146214	0.00283226615590772	0.0305636556566639
Merged-chr12-32724662-4	chr12	32724548	32724748	+	984.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95687.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	5.6706883436058	5.90447976978769	5.76896616090154	5.82151578368122	5.60976824828693	5.25310629895177	5.42421433298705	5.74126079488382	-0.45451322918558	0.0949367294959228	0.337167022691861
Merged-chr2-157840743-4	chr2	157840651	157840851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025680, intron 11 of 15)	intron (NM_025680, intron 11 of 15)	-73902.0	NM_198627	277432.0	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	6.52717635705193	6.75696499230888	7.09997850289364	7.39703577401895	6.4609174785159	6.56132502543128	6.62513489106718	6.50632252434699	-0.661602333648935	0.00849886586588314	0.0701056041394806
Merged-chr10-60739812-4	chr10	60739738	60739938	+	892.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	12944.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	4.01161555326067	3.71827877690932	4.15028711831999	4.53481615394838	4.06942034661409	3.86324219792051	4.08780227959115	3.85540809206174	-0.46829840228495	0.327737218253985	0.639159620583501
Merged-chr1-172306369-4	chr1	172306261	172306461	+	852.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6006.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	3.85094853103605	3.9358323546018	3.64129311828966	4.17231239182882	3.77504002190453	3.57290265503111	3.78649466434377	3.63940493097659	-0.672792275391355	0.162171223920017	0.451240590571241
Merged-chr17-46342493-4	chr17	46342389	46342589	+	840.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-14466.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	4.11801710174461	4.08763844745913	4.47007112244343	4.34969439709278	4.08482058533836	4.24465993344773	4.68969901095625	4.21330845009312	0.134943019643045	0.747726886172869	0.90068822490119
Merged-chr1-151953733-4	chr1	151953643	151953843	+	852.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 3 of 5)	intron (NM_197990, intron 3 of 5)	136577.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	4.0335600862865	3.91458257683705	4.03416380880864	4.29987143945591	3.69201051468496	3.77490925491334	4.06220172905827	4.16488237255214	-0.424912155055769	0.351172018336452	0.658644512922243
Merged-chr6-38690779-4	chr6	38690674	38690874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27705.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	6.34029794772193	6.13195460412917	6.06114226658853	6.44232640832046	5.79808056837215	5.63914726	5.94396690260804	6.01424909365339	-0.639187002110561	0.0108121427161661	0.0835429338247923
Merged-chr8-124020545-1	chr8	124020445	124020645	+	758.0	f1_balb.idr	intron (NM_133966, intron 1 of 4)	B1F|SINE|Alu	511.0	NM_001357315	102162.0	Mm.291777	NM_133966	ENSMUSG00000038697	Taf5l	1110005N04Rik|AI849020	TATA-box binding protein associated factor 5 like	protein-coding	3.06656265551055	3.01058141887887	2.809067725359	2.91809223321675	2.94703035028478	3.05305269471169	3.16581629887408	3.17712587823791	0.550470752376285	0.341392015150401	0.650444129831912
Merged-chr14-65389888-4	chr14	65389794	65389994	+	875.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199029, intron 4 of 9)	intron (NM_199029, intron 4 of 9)	31218.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	3.90563398344802	4.17073470837204	3.95935765554178	4.34092369767983	4.35961482834069	3.85185374171122	4.13448804915206	4.15014167823262	0.0612519742187349	0.890106757380711	0.958849035710418
Merged-chr11-52072055-4	chr11	52071951	52072151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	-26773.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	5.82999315056126	5.63983275607874	5.73583637888507	5.91367731193269	5.70457725246791	5.44361113394698	5.75496314520726	5.91525609668767	-0.123298783595811	0.641091596030997	0.848590400530615
Merged-chr2-14230051-5	chr2	14229895	14230095	+	843.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 1 of 29)	intron (NM_008625, intron 1 of 29)	581.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	3.32105344312565	3.21376536179128	3.32145792254107	3.50432023298782	3.53642658354564	3.55150426650272	3.36801394419602	3.63872376442733	0.574989204082032	0.265376632641173	0.577001515467012
Merged-chr2-126708625-2	chr2	126708525	126708725	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019729, intron 1 of 18)	intron (NM_019729, intron 1 of 18)	1297.0	NM_019729	84092.0	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	3.10578405722575	2.71963597027205	2.79064403757149	2.90231816211149	3.32624326761581	3.03472849531953	2.97827107521843	3.10448440388362	0.974358010976445	0.108895344348046	0.364275858414774
Merged-chr10-75784051-4	chr10	75783938	75784138	+	914.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001358778, exon 5 of 5)	3' UTR (NM_001358778, exon 5 of 5)	-2616.0	NM_001346523	103140.0	Mm.5731	NM_133994	ENSMUSG00000001665	Gstt3	AI118089	glutathione S-transferase, theta 3	protein-coding	4.41560060569119	4.38700622558127	4.89610513980127	4.83783508912392	4.48074172507959	4.12438511108125	4.67455201169672	4.50011417339666	-0.443604458457551	0.26680828369304	0.57842963999018
Merged-chr7-117429139-3	chr7	117429043	117429243	+	720.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175645, intron 1 of 11)	MER74B|LTR|ERVL	48164.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	3.81217565953058	4.15314983440605	3.65715639371944	3.83033751460579	3.62790917673174	3.59625447205784	3.58741573617539	3.65517349425091	-0.791112450279843	0.0987802902411469	0.344525787880958
Merged-chr5-140611202-4	chr5	140611093	140611293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008494, intron 1 of 7)	intron (NM_008494, intron 1 of 7)	3852.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	6.03407731034996	5.89822461705807	6.34870112993824	6.32178160546474	5.71399116390204	5.93210923172652	5.75121954955051	5.82662467900313	-0.585522903067822	0.0215056482960202	0.134323494213971
Merged-chr9-25504290-4	chr9	25504205	25504405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	22708.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	7.17393165898565	7.45387020405476	7.76220024232673	7.56356220620275	7.42442471030354	7.46617208676893	7.26319462452576	7.51132017725326	-0.118378730041962	0.545886857885598	0.796010912204515
Merged-chr11-115628253-4	chr11	115628166	115628366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026071)	promoter-TSS (NM_026071)	29.0	NM_001252394	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	8.43122596375957	8.34665617169322	8.46254842304521	8.05433009629122	8.389292751338	8.47706685605004	8.37816270748309	8.18832474887685	0.0474812431930249	0.782154939429985	0.915237231838361
Merged-chr8-94386915-2	chr8	94386841	94387041	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357205, intron 1 of 7)	intron (NM_001357205, intron 1 of 7)	512.0	NM_022331	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	5.6327861509326	6.5809427190553	5.42435270452401	5.49435961574888	5.98548205061252	6.18771612234257	5.57743696362562	5.62977627951424	-0.0154196266368739	0.965951856174397	0.988022131369328
Merged-chr1-53787539-4	chr1	53787445	53787645	+	911.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-2330.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	4.09976226001863	4.02976625837756	4.19691439164166	4.37291167579101	4.53204129834939	4.06355812017185	4.42835996369333	4.28405981773217	0.370161487342742	0.368329280231795	0.672790747218716
Merged-chr8-78508467-4	chr8	78508379	78508579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029736)	promoter-TSS (NM_029736)	89.0	NM_001358975	19656.0	Mm.24718	NM_009033	ENSMUSG00000037070	Rbmxl1	Hnrpg|Rbmx|Rbmxrt	RNA binding motif protein, X-linked like-1	protein-coding	5.63511320428728	5.07152971216847	5.58319141044158	5.432094721253	5.82594452405424	5.73162845716852	5.77584593767997	5.95049663608754	0.642332611289474	0.0199517411584265	0.127834296772796
Merged-chr2-152736226-4	chr2	152736107	152736307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010495)	promoter-TSS (NM_010495)	-44.0	NM_010495	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	7.7280361499609	7.7894109991557	7.50405761302219	7.38095201606396	7.68426581167387	7.79906476406716	7.82642033057627	7.55456651870861	0.152110749965868	0.413935308118539	0.708836580295662
Merged-chr6-146762488-4	chr6	146762364	146762564	+	825.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172734, intron 3 of 13)	MER102b|DNA|hAT-Charlie	37534.0	NM_172734	232533.0	Mm.322121	NM_172734	ENSMUSG00000001630	Stk38l	4930473A22Rik|Ndr2|Ndr54	serine/threonine kinase 38 like	protein-coding	3.95920783169371	4.26488653711947	3.95982138488921	3.60085683472774	3.54490312579659	3.58037912219166	3.69214008834059	3.91062352011425	-0.803494683754491	0.108448562078088	0.363483160530424
Merged-chr3-95281386-2	chr3	95281286	95281486	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173347, intron 1 of 7)	CpG	690.0	NM_173347	229589.0	Mm.14155	NM_173347	ENSMUSG00000015711	Prune1	9230112O05Rik|C130058A12|DRES-17|HTCD37|PRUNEM1|Prune|Prune-M1	prune exopolyphosphatase	protein-coding	3.40417422700339	3.39463776953048	3.52073986479337	3.34579378545028	3.69088962728779	3.63712051803093	3.70940677086332	3.67531157724361	0.873207337348274	0.0654877970414592	0.272450517599744
Merged-chr11-3895232-4	chr11	3895144	3895344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026150)	promoter-TSS (NM_026150)	4.0	NM_173745	75219.0	Mm.32588	NM_173745	ENSMUSG00000047205	Dusp18	4930527G07Rik|AI430870|BB028064|DSP18|DUSP20|LMWDSP20	dual specificity phosphatase 18	protein-coding	6.78448269305429	6.80017747661398	6.12928834626591	6.56281031379105	6.68787891916404	6.61509479280865	7.20722360855769	6.63434501275249	0.304397617784092	0.233067363884191	0.542637115462281
Merged-chr13-58385042-4	chr13	58384938	58385138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027335, exon 1 of 4)	exon (NM_027335, exon 1 of 4)	187.0	NM_027335	70153.0	Mm.296610	NM_027335	ENSMUSG00000021550	2210016F16Rik	-	RIKEN cDNA 2210016F16 gene	protein-coding	5.84540709711601	5.5280012417778	5.92948895904656	5.76450873268858	5.40506411854972	5.62110512438496	5.15884577406257	5.28438601972241	-0.675705915053823	0.0172949567216466	0.116037112309368
Merged-chr8-13660452-4	chr8	13660333	13660533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	17154.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	6.64429657596867	6.3876477585025	6.95334662821455	7.01548208998561	6.39709199601042	6.41541616987648	6.46757548753572	6.52976971067052	-0.480469004959497	0.0408014582597962	0.204233966067091
Merged-chr19-44389174-2	chr19	44389069	44389269	+	857.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	18540.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	4.50715697087386	4.58845909783534	4.50786457023385	4.74507752353074	4.50600127773675	4.72043259012698	4.5280136187445	4.27791135611139	-0.19645015305689	0.592565175957471	0.822249511338918
Merged-chr3-127789934-4	chr3	127789826	127790026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145133)	promoter-TSS (NM_145133)	54.0	NM_145133	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	7.79415292763767	8.17122251189417	7.83285879837605	7.23828463035101	7.88505066454453	7.64528541416821	7.73464958442242	7.34881445984975	-0.161955103134264	0.495225764336953	0.765570679090165
Merged-chr18-12940507-3	chr18	12940411	12940611	+	779.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 1 of 27)	intron (NM_207530, intron 1 of 27)	1330.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	3.49473541503287	3.6187538384274	3.36948842852548	4.0570298790865	3.88716032150154	3.61034734745409	3.48278844213036	3.85644211212947	0.129731052830057	0.811744153095553	0.927210736952393
Merged-chr8-57652593-8	chr8	57652440	57652640	+	989.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040698, intron 1 of 3)	CpG	515.0	NM_001167981	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	5.07102939810581	5.08252239933451	5.1067684854261	5.39318569711367	5.34568823630611	5.17642303108452	5.53574319632144	5.26461011448799	0.272143385843195	0.370814651321927	0.675026625059293
Merged-chr11-5792676-4	chr11	5792565	5792765	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146309, intron 2 of 12)	intron (NM_001146309, intron 2 of 12)	4182.0	NM_013810	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	4.98872398545533	5.03159426690198	5.27485325495044	5.37552727496231	4.82051046482639	4.93544647450575	5.06714023794771	5.15238879012898	-0.379011576309882	0.237549860864455	0.547728283751802
Merged-chr12-3791233-3	chr12	3791162	3791362	+	825.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15718.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	2.71584932959898	2.70708357735603	2.71610872813354	2.81033626574742	3.13371153721948	3.20082076449606	3.02163563640447	2.91433840603356	1.42184203376649	0.0204281750772256	0.129791758798701
Merged-chr11-114927364-4	chr11	114927273	114927473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347651, intron 2 of 3)	intron (NM_001347651, intron 2 of 3)	7013.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	5.69005863979947	6.22532736696881	5.99870763947102	5.86182499827945	6.13554247641912	5.35701908813434	5.90374734132281	5.90754408881904	-0.142423344256113	0.623629409334439	0.839057402560226
Merged-chr2-30604992-4	chr2	30604925	30605125	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030137, intron 1 of 1)	intron (NM_030137, intron 1 of 1)	9981.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	5.42812612494951	5.93431247141422	5.39907970705573	5.209360083156	5.92503977734541	5.84472089698805	5.24570181681277	5.26801046383072	0.167670650698582	0.620374072889996	0.837190371300352
Merged-chr5-21735794-4	chr5	21735692	21735892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1368.0	NM_028431	73078.0	Mm.301655	NM_028431	ENSMUSG00000029017	Pmpcb	3110004O18Rik|MPP11|MPPB|MPPP52	peptidase (mitochondrial processing) beta	protein-coding	5.05837330456749	5.19492561197978	4.76381201475662	5.22913250647024	4.86764952143752	5.19928681129796	4.51860681555858	5.29501136156842	-0.159992787745981	0.656777316583953	0.856884619241167
Merged-chr10-43751080-4	chr10	43750982	43751182	+	915.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040581, intron 1 of 3)	intron (NR_040581, intron 1 of 3)	4924.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	4.66857720401947	4.76184897214586	4.49730032433804	5.20249076051693	4.94999402543494	4.62927619757837	4.5222364408972	4.85303185823542	-0.157153756726181	0.683484468259624	0.870336575552993
Merged-chr15-100081327-4	chr15	100081223	100081423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 3 of 3)	intron (NR_037311, intron 3 of 3)	42659.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	6.18679806704821	5.72523709118032	6.00951967647266	6.3201475163056	6.07521202781558	5.87485239699426	5.79689976876783	5.74631231361112	-0.32106671090976	0.231081495602702	0.540630744658978
Merged-chr3-138026487-4	chr3	138026375	138026575	+	946.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40913.0	NR_037975	329763.0	Mm.169710	NM_177860	ENSMUSG00000049349	Gm5105	D830013H12|EG329763	predicted gene 5105	ncRNA	5.06662878309981	4.92586693895246	5.19319963362059	5.72433580531189	4.71439045533234	4.72982923774631	4.9403445130858	4.96094988309354	-0.868604679576344	0.0161253280433039	0.110247308115871
Merged-chr14-65890881-3	chr14	65890749	65890949	+	992.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53547.0	NM_145944	67179.0	Mm.214576	NM_145944	ENSMUSG00000022035	Ccdc25	2610528H13Rik|NSrp70	coiled-coil domain containing 25	protein-coding	4.47019699834151	4.27908553588723	4.32448632559278	3.81515418203509	5.18152878536484	5.19951311831699	5.24514108190948	4.64106809676432	1.87337786548435	1.47456267703929e-06	4.98375578295249e-05
Merged-chr11-99132576-4	chr11	99132474	99132674	+	899.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22503.0	NM_001301713	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	4.1084506468157	4.18502058502061	4.37649807753804	3.53610283822473	4.6367436319414	4.07746024874833	4.54046884533977	4.05621645470858	0.685542480055624	0.15358252988409	0.438343594154522
Merged-chr3-109251980-4	chr3	109251890	109252090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88693.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	6.29017739135034	5.92005368247277	5.9313400684376	6.38485378133284	6.33129346695409	6.18061584716163	6.14391878382501	6.78174380544835	0.339868206143061	0.206287731894249	0.510210725476936
Merged-chr14-75066106-4	chr14	75066002	75066202	+	885.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	50075.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	4.66407192601872	4.39368846091507	4.62636581829554	4.62444439860689	4.77886990612443	4.49711475803472	4.48351046819939	4.83697963215575	0.182713459829015	0.609996844868835	0.831398279446287
Merged-chr17-34619220-4	chr17	34619128	34619328	+	818.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302395, intron 7 of 8)	intron (NM_001302395, intron 7 of 8)	-3257.0	NM_152922	81701.0	Mm.231343	NM_152922	ENSMUSG00000015467	Egfl8	Ng3	EGF-like domain 8	protein-coding	3.93566914165484	3.60594655116666	3.03979422573684	3.29588793449024	3.49094056403298	3.56716654601465	3.49364865670672	3.80641715501985	0.273121949852524	0.6399784978541	0.847861028882256
Merged-chr1-86503575-4	chr1	86503437	86503637	+	908.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23020.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	3.80993078379523	3.94557520492328	3.70430721321342	3.71955910397777	3.57772352425822	3.93107127480023	3.74331583231503	4.04019282042228	0.0933806112124438	0.84056534199166	0.939314878134017
Merged-chr8-22477441-3	chr8	22477278	22477478	+	942.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001012667)	promoter-TSS (NM_001012667)	-499.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	4.32658915237382	4.02217227832397	4.70358788086503	4.13310185251694	4.4034427677006	4.04400331190489	4.26357812972109	4.6336988766478	0.103327186997484	0.811401753565767	0.927013023932743
Merged-chr19-20362369-3	chr19	20362263	20362463	+	666.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28308.0	NM_010730	16952.0	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding	3.68348313946045	3.71119672981627	3.40201154573171	3.57274955962672	3.71792114120351	3.69468449448706	3.71789203607733	3.52033484164853	0.218227407793737	0.647212592144552	0.851605116430591
Merged-chr8-85432878-4	chr8	85432773	85432973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025722)	promoter-TSS (NM_025722)	-32.0	NM_025722	66714.0	Mm.272748	NM_025722	ENSMUSG00000036934	4921524J17Rik	-	RIKEN cDNA 4921524J17 gene	protein-coding	8.0738242151575	8.1702127215385	7.95227101051048	8.27536366821524	8.0525124208692	8.19963487292407	8.34027858531057	7.90316512130459	0.00306010658496973	0.986164939843626	0.994900845496066
Merged-chr17-50996061-3	chr17	50995941	50996141	+	739.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 3 of 21)	intron (NM_028162, intron 3 of 21)	163337.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	3.49025743078091	3.36179880798361	3.32085456274855	3.3397846170127	3.53610035912339	3.55112254963602	3.30914803079388	3.54067569389803	0.386011577390695	0.440755384331342	0.728120488809168
Merged-chr15-59809166-1	chr15	59809066	59809266	+	966.0	f0_c57.idr	Intergenic	Intergenic	-14207.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	4.06350619350055	3.98835785212967	4.01429913375254	3.93603136367668	4.16274634638365	3.91574414432648	4.3464825238145	4.5091591841247	0.654044115740868	0.117631642290735	0.379357798104791
Merged-chr7-79831777-3	chr7	79831687	79831887	+	886.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008486, intron 15 of 20)	HAL1|LINE|L1	16423.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	3.43326245085531	3.41377029300641	3.43370019176677	3.90790507257104	3.44624901943423	3.60457406397088	3.42103927738046	3.37331549999397	-0.398188767159959	0.456479621038464	0.739906295182684
Merged-chr5-142905981-4	chr5	142905896	142906096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007393, intron 1 of 5)	CpG	758.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	8.24042127168271	8.81337150538551	8.6756864095846	8.27319735407265	8.77630464587786	9.15479492059336	8.91878971385823	9.01835946996811	0.562068332477803	0.00317375285716207	0.033338924825847
Merged-chr7-35093829-3	chr7	35093730	35093930	+	780.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B4|LTR|ERVL	-25463.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	3.52429736318342	3.20286506626273	3.26453774335753	3.53147006015224	3.16516079671329	3.18792260010041	3.06914664558085	3.26284726065281	-0.837089600947056	0.132551468792626	0.405487407477667
Merged-chr13-107094749-4	chr13	107094663	107094863	+	893.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72193.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	4.06372887770528	4.07604261102257	4.16128465169489	4.20631120091943	4.18413471514134	4.02647031859674	4.31567783932917	4.52115203175439	0.347170022819302	0.392165242047857	0.691774675781771
Merged-chr12-44292463-4	chr12	44292367	44292567	+	777.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026164, intron 5 of 9)	intron (NM_026164, intron 5 of 9)	23313.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	3.71723138355044	3.81719816158275	3.77296234010602	4.04072229632769	3.8169492685733	3.94586065782417	4.08780933495637	4.06148979365505	0.33117781757475	0.460893293523471	0.742813687656015
Merged-chr2-93459821-1	chr2	93459721	93459921	+	1000.0	f1_balb.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	2030.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	2.79664538075307	2.70405958957453	2.96964253716133	2.64957257954807	2.87881230271253	2.54953185300854	2.51824911434185	2.96787561054647	-0.16063525632875	0.815585561260688	0.928841034639593
Merged-chr1-93165571-3	chr1	93165464	93165664	+	826.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-2859.0	NM_001310428	381284.0	Mm.193346	NM_001310428	ENSMUSG00000084989	Crocc2	E030010N08Rik|Gm976	ciliary rootlet coiled-coil, rootletin family member 2	protein-coding	4.51335093980376	4.71523175215125	4.01613292955285	4.41666718623039	3.97476060922609	4.02622702444113	4.69722199441355	3.95780074414992	-0.565444798560753	0.225735479563394	0.534241429840117
Merged-chr2-32536998-4	chr2	32536895	32537095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153560, intron 1 of 10)	intron (NM_153560, intron 1 of 10)	1636.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	6.6682637773081	6.45800646761573	6.48642900213054	6.64876871616706	6.00383042862334	6.2163461971572	6.25916491270681	6.51419165440794	-0.476088976655652	0.03905766200833	0.198620084596051
Merged-chr8-77506721-3	chr8	77506624	77506824	+	854.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-10332.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	3.9454173421069	3.79655196157437	3.99528744931717	4.41967425862325	4.14243128889573	3.96162933490935	3.92975046242187	3.89253025111912	-0.241054766174309	0.602761186404205	0.82782634442766
Merged-chr11-69134458-4	chr11	69134366	69134566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011786, exon 10 of 15)	exon (NM_011786, exon 10 of 15)	8089.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	7.08694782580085	7.12149578088486	7.03978410414415	7.04840615386871	7.22334757124231	7.00267404436198	6.94131578429564	7.27014587799611	0.0669567433632436	0.72450553629227	0.890296037325371
Merged-chr1-164248913-4	chr1	164248813	164249013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054087)	promoter-TSS (NM_054087)	-133.0	NM_001276455	116914.0	Mm.35444	NM_054087	ENSMUSG00000040918	Slc19a2	AV276020|AW322295|DDA1|THTR1|TRMA|ThTr-1	solute carrier family 19 (thiamine transporter), member 2	protein-coding	9.03628825849106	8.96995018637891	9.01686153368586	8.9746116865401	9.08090090607043	9.09654379163972	9.18516429065689	8.85135041249884	0.075740271808907	0.60250129646241	0.827728470419368
Merged-chr6-83032893-4	chr6	83032833	83033033	+	910.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001291799, exon 2 of 5)	exon (NM_001291799, exon 2 of 5)	538.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	4.54057865839544	4.91371926180489	4.4094975042104	4.55012722662213	4.6897154727782	4.58571298695598	4.39021241874381	4.76684338593954	0.00132631138119517	0.997137415014296	0.998877546454192
Merged-chr16-15890673-4	chr16	15890581	15890781	+	869.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 18 of 18)	intron (NM_001355731, intron 18 of 18)	3395.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	4.21357570174944	3.91448017788102	4.34301871116389	4.37822977668219	3.98905038508725	4.24596079952183	4.10297922593498	4.4568776650335	-0.0673578130746192	0.874113621475263	0.952832392676241
Merged-chr11-101658481-4	chr11	101658399	101658599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7042.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	5.74403581029116	6.26773984691935	6.17054537931015	5.35671613993752	5.8145062413141	5.87029742590394	5.83565153883734	5.55048217608058	-0.241447857034153	0.440506026607574	0.727928180988543
Merged-chr1-136635952-4	chr1	136635890	136636090	+	928.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11089.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	4.38982228219204	4.35582037060939	4.4745259313345	4.87201172319802	4.10591992050923	4.17011398585549	4.56914202763806	4.43038312450529	-0.533707523455813	0.195843712833256	0.496720340498799
Merged-chr12-84969141-3	chr12	84969065	84969265	+	960.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178065, intron 1 of 19)	intron (NM_178065, intron 1 of 19)	1721.0	NM_178065	68497.0	Mm.24446	NM_178065	ENSMUSG00000042350	Arel1	1110018G07Rik|AI649076|AW610792|Kiaa0317|mKIAA0317	apoptosis resistant E3 ubiquitin protein ligase 1	protein-coding	4.00919304437435	3.89781095686769	3.48745215148132	3.46374021951496	3.36560953960445	3.41411437186143	3.41516240935501	3.5976562748978	-0.914221863992784	0.0850891718332389	0.317503484974581
Merged-chr6-38434851-4	chr6	38434764	38434964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177185, intron 1 of 16)	CpG	939.0	NM_177185	320538.0	Mm.302831	NM_177185	ENSMUSG00000038538	Ubn2	2900060J04Rik|6030408G03Rik|BC060116|D130059P03Rik|mKIAA2030	ubinuclein 2	protein-coding	5.9547408230633	5.80754394696258	5.58641267496501	5.7954585917291	6.09857254626806	5.76391159197696	5.58650185755847	6.0538704926267	0.176849135458488	0.508722073068324	0.773675372068676
Merged-chr17-35916632-7	chr17	35916564	35916764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163818)	promoter-TSS (NM_001163818)	-224.0	NM_001361454	66973.0	Mm.29484	NM_025878	ENSMUSG00000024436	Mrps18b	2400002C15Rik|MRP-S18-2|S18mt-b	mitochondrial ribosomal protein S18B	protein-coding	7.17227210313831	7.5312634854596	7.14988563854677	7.07947279715884	7.13386195014609	7.65996115027117	7.54244874209065	7.59966656760996	0.334864960807503	0.114545833189633	0.374380469308701
Merged-chr16-92693354-4	chr16	92693254	92693454	+	861.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 3 of 6)	intron (NM_001111022, intron 3 of 6)	3975.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	3.97810285078967	3.90131261435344	3.47021563338331	4.24053089036581	3.9481190445325	3.83924833573386	3.86549922695804	4.06642974913884	-0.0236362822801225	0.961543339022554	0.986248390804749
Merged-chr10-60280517-4	chr10	60280446	60280646	+	765.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 1 of 14)	intron (NM_011179, intron 1 of 14)	2918.0	NM_001146121	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	3.57397650176794	4.00880388037698	3.51540621993934	3.51816284392979	3.88632895987217	3.56929645367963	3.67029014826742	3.87902029939288	0.282245669116489	0.567991753683988	0.808419300518297
Merged-chr3-15850096-3	chr3	15849987	15850187	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1600.0	NM_001173459	100038947.0	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	4.21226375277017	4.43934147120062	4.47647190820566	2.78626782091045	5.33749460988419	5.2928910751379	5.5735354457029	5.225879100856	2.33797245485641	0.0265192659284677	0.154519877989719
Merged-chr7-45080104-4	chr7	45080130	45080330	+	897.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11983.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	2.94057345292087	2.8959768112732	3.11467521187874	2.77212604357909	2.81286930909233	2.91897833641427	2.80209367189789	3.21652436700214	0.0732717392312163	0.905957760311413	0.965086764362987
Merged-chr17-26750127-4	chr17	26750039	26750239	+	931.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029870, intron 4 of 8)	intron (NM_029870, intron 4 of 8)	-30940.0	NM_172149	224630.0	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	4.81203722694307	4.40515101307433	4.67985251216819	4.31826589988584	4.27463834240881	4.3973332419386	4.25033476808991	4.44645515337783	-0.494282973154267	0.206795219369766	0.510809505458117
Merged-chr6-85904986-3	chr6	85904912	85905112	+	577.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029331)	promoter-TSS (NM_029331)	-74.0	NM_029331	75541.0	Mm.24454	NM_029331	ENSMUSG00000068299	Nat8f4	1700019G17Rik	N-acetyltransferase 8 (GCN5-related) family member 4	protein-coding	3.10837419499734	3.32171093577343	3.44342776370894	3.21584066329845	3.67763488727175	3.8807931155169	3.91342581702025	3.60849609441243	1.63174023479153	0.0012080416345243	0.0156454140290767
Merged-chr9-106685106-4	chr9	106684952	106685152	+	835.349976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104459, intron 1 of 4)	intron (NR_104459, intron 1 of 4)	764.0	NM_011573	21767.0	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	3.62415355701327	3.74584890894423	3.85162285521959	3.23091978570094	4.31824230344758	4.25982909916525	3.93447617843962	3.99699297635764	1.48761972648757	0.00214745341378041	0.0247215892834346
Merged-chr1-119997228-4	chr1	119997087	119997287	+	698.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1977.0	NM_001115074	226356.0	Mm.297290	NM_001115074	ENSMUSG00000036962	Cfap221	Gm101|Pcdp1	cilia and flagella associated protein 221	protein-coding	3.6220818829385	3.63086123308493	3.72865116755751	3.5535649596657	3.50578993038559	3.94576561882317	3.71319966952988	3.82421306886603	0.368734369780553	0.435695254219568	0.724787271556548
Merged-chr4-135353676-3	chr4	135353538	135353738	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130477)	promoter-TSS (NM_001130477)	-424.0	NM_001130477	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	6.54554191536033	6.35434127246658	6.480321410284	6.40265529608731	6.83302417388497	6.58698361727111	6.77364764898411	6.33153058781369	0.30725539977804	0.166936690114728	0.458425411484422
Merged-chr2-166650636-4	chr2	166650529	166650729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	63203.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	5.8196564092659	6.11251253407082	5.93831274776699	6.45266400536057	5.70531951578489	5.86896070796126	6.03529309764467	5.68704844164047	-0.471826524715685	0.0867389351729147	0.321209032577518
Merged-chr9-40757936-4	chr9	40757832	40758032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-43341.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	6.12117756377366	6.09814001657956	5.83720949623673	6.11947039444407	5.89483638557047	5.61845303179253	6.07124857329676	6.19392788057624	-0.145205179676579	0.570845598972954	0.810229892705655
Merged-chr5-23434418-6	chr5	23434302	23434502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026984)	promoter-TSS (NM_026984)	-27.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	5.81491958657463	5.9701213818716	5.4108188755173	5.40456903189218	6.10459457384791	6.4782358110487	6.42925274190042	5.93022674244664	0.926032189407877	0.00109311247553708	0.0144353715948522
Merged-chr8-82997066-4	chr8	82996969	82997169	+	949.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 2 of 6)	intron (NM_177378, intron 2 of 6)	133713.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	5.58316118980105	5.57799482790311	5.69781626267385	5.74462546762579	4.85751163461312	4.62386122640358	4.92433696577106	4.8219419760543	-1.5746409902398	2.87491997566982e-07	1.11944162444312e-05
Merged-chr10-98917250-6	chr10	98917194	98917394	+	799.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	2142.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	3.36223676974988	3.03393275063221	3.00793239204097	2.9763699578933	3.31464695203296	3.42433563159161	3.12594955805714	3.2530760984785	0.715470173224835	0.200739204165971	0.502930308662197
Merged-chr3-118071564-4	chr3	118071447	118071647	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-202611.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	5.61095895902408	4.98423629869235	5.18800052500484	5.74979156955808	5.31852373098898	5.49014961587401	5.09434717629996	5.34192208889734	-0.210457247810048	0.525826128798722	0.783367294725902
Merged-chr10-127621802-4	chr10	127621730	127621930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008512)	promoter-TSS (NM_008512)	-682.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	7.57146296571967	7.23507493060856	7.75038960611367	7.82967871255263	7.35187844182713	7.44743369490152	7.42707759765621	7.09970701196979	-0.377668261144231	0.0677256358300403	0.277799318092058
Merged-chr8-70212563-7	chr8	70212407	70212607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007570)	promoter-TSS (NM_001007570)	-226.0	NM_001007570	73095.0	Mm.185413	NM_001007570	ENSMUSG00000002346	Slc25a42	2900084M01Rik	solute carrier family 25, member 42	protein-coding	8.30687109355254	8.45760102354428	8.56623671977592	8.28923515327922	8.17396115107411	8.55701179981914	8.34545188926983	8.35773953707729	-0.0578057303292019	0.728735090872409	0.892191722318422
Merged-chr13-89378569-3	chr13	89378469	89378669	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-162067.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	4.14728070103126	4.03850553497735	4.0856333056583	4.12479832335327	5.58542651496643	5.26148800256171	5.25591051218354	5.45044765221674	2.66800869555896	1.63400507644425e-13	2.04405707093541e-11
Merged-chr13-93187998-4	chr13	93187899	93188099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154997, intron 1 of 15)	intron (NR_154997, intron 1 of 15)	4418.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	5.89434068171721	6.32042664256991	6.05652269071537	5.88474254360729	6.51318380366517	6.44911284907901	5.88954192046569	6.17558860460755	0.367082243998955	0.164532968788811	0.45480746351141
Merged-chr8-119848016-4	chr8	119847892	119848092	+	924.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7413.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	3.9571337692402	3.85124017054802	4.05477213014636	4.03363032180262	3.99275290167245	4.0278391515383	4.1687529335221	4.14239524494361	0.271719052467003	0.512214972019852	0.775701492755237
Merged-chr14-70541139-3	chr14	70541038	70541238	+	978.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4113.0	NM_180588	72549.0	Mm.46742	NM_180588	ENSMUSG00000033589	Reep4	2700029E10Rik	receptor accessory protein 4	protein-coding	4.16123129111003	4.48496652231599	3.982390521871	4.3630472418029	3.60163345468973	3.57887731389105	3.81491094338653	3.93100806260998	-1.56502841454426	0.000972898644530279	0.0131429023759766
Merged-chr11-5787777-4	chr11	5787699	5787899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146308)	promoter-TSS (NM_001146308)	-684.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	5.8093013693627	5.86786429852776	5.94539921330539	5.598591448132	5.91221853563111	5.78111977463708	5.63056560503779	5.89775925587764	0.030192309764723	0.907276742928915	0.96565361691694
Merged-chr11-82867834-3	chr11	82867692	82867892	+	887.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164569, intron 1 of 7)	Tigger14a|DNA|TcMar-Tigger	2952.0	NM_001164570	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	3.37635207410011	3.47988256095233	3.3768159549267	2.92854823936149	3.84295574530816	3.54948995224572	3.04884148635243	3.19298198499401	0.495698008772394	0.421922703042617	0.714309708855546
Merged-chr6-91440882-4	chr6	91440767	91440967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045980)	promoter-TSS (NR_045980)	-13.0	NR_045980	75787.0	Mm.30842	NR_045980	ENSMUSG00000097693	4930471M09Rik	4930427C17Rik	RIKEN cDNA 4930471M09 gene	ncRNA	6.5458265490104	6.55403924809277	6.24544535051685	6.48828334512025	6.53651643159621	6.53645261185977	6.38122907766875	6.2608498802348	-0.0443451576737737	0.840274663330568	0.939246943014465
Merged-chr16-89909633-3	chr16	89909521	89909721	+	892.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 2 of 27)	intron (NM_009384, intron 2 of 27)	51206.0	NM_009384	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	4.06428603693117	3.77409984107647	3.61232244357089	3.8342668525445	3.8550030014007	3.90142295551158	4.08742917768539	3.61050347971324	0.124790161786883	0.788517496853557	0.91812687233996
Merged-chr16-11000633-3	chr16	11000527	11000727	+	935.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7506.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	4.26251738557457	3.83798399682886	4.57455193455817	3.8331701178666	3.50964619926946	3.79816370289455	3.66175029836814	4.09261477397176	-1.04148890025921	0.0430273056505967	0.211034090773203
Merged-chr7-125597267-3	chr7	125597134	125597334	+	873.900024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6195.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	3.11197006416539	2.80871513537225	2.96627717483077	2.49049738354628	3.99712932389551	3.89111037552958	3.56256677517365	3.17851415808845	3.41898041249144	5.71674367063408e-07	2.09209304746562e-05
Merged-chr3-30995459-3	chr3	30995382	30995582	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008857)	promoter-TSS (NM_008857)	-289.0	NM_008857	18759.0	Mm.291554	NM_008857	ENSMUSG00000037643	Prkci	2310021H13Rik|AI427505|PKClambda|Pkci|Pkcl|Prkcl|aPKClambda|mKIAA4165	protein kinase C, iota	protein-coding	6.02684957923057	6.07051010051331	5.55030099906133	6.00832654368368	5.82761565849621	6.09389665425025	6.07772345540613	6.02360692882275	0.101542695501447	0.693112389924615	0.875216252807466
Merged-chr19-7267306-3	chr19	7267223	7267423	+	820.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054048)	promoter-TSS (NM_054048)	-71.0	NM_054048	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	3.34813702827482	2.9679425985971	3.24142233919259	3.03883587917013	3.18573998709017	3.17205181389197	3.11333360765001	3.29426964357799	0.169585986756717	0.762196282928979	0.906834880352543
Merged-chr2-117852122-4	chr2	117852028	117852228	+	959.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040631, intron 2 of 5)	intron (NR_040631, intron 2 of 5)	30200.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	4.66322873100246	4.52901996032321	4.15859401001294	4.73715021780577	4.99074485017952	4.63332996354716	4.67916798127454	4.49908661820211	0.366062298115069	0.344437346948139	0.652914285727938
Merged-chr10-40095553-4	chr10	40095464	40095664	+	897.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	46690.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	4.55185922450474	4.2084284694721	4.34592655426475	4.56211653716223	4.47910004354775	4.68378723093932	4.18624452497342	4.34324029735588	0.0058175768822087	0.988124194505895	0.995370064932717
Merged-chr2-52941787-4	chr2	52941668	52941868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	83900.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	7.10087489997607	7.55949702608107	7.00582636799378	6.76998761196652	7.11641971417508	7.21964577998266	6.87996671515023	6.48250185728542	-0.25054542867656	0.333690211240029	0.644499377143083
Merged-chr12-56336729-4	chr12	56336618	56336818	+	930.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145442, intron 6 of 8)	intron (NM_145442, intron 6 of 8)	9176.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	4.79630895522121	4.85711105351992	4.41348187716252	5.10223993162454	4.91445937739303	4.32936312453852	5.09485142158434	4.75652829643594	-0.0428634251028533	0.913537465434485	0.967557224197028
Merged-chr4-62663578-4	chr4	62663457	62663657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-10417.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	5.97678954164349	5.89362703441124	6.22535161033281	5.96283581074827	6.32071704232272	5.85044406403135	6.24807737360102	6.44308174096919	0.347038514211501	0.164473010754434	0.45473647018887
Merged-chr9-105459138-4	chr9	105459011	105459211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359823, intron 7 of 26)	MER47B|DNA|TcMar-Tigger	36022.0	NM_175025	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	7.36681631285488	7.36040789484083	7.31375414935938	7.49243952870564	7.84132076749323	7.72402221361437	8.21400377471038	8.11512865065335	0.781421494628782	3.03073525261083e-05	0.000733258683023747
Merged-chr2-165881119-4	chr2	165881008	165881208	+	972.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 1 of 11)	intron (NM_001252587, intron 1 of 11)	1170.0	NM_001281926	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	4.45493720961447	4.40534252371313	4.28222694247559	4.52349420402174	4.46258244277623	4.40975512441955	4.01133599686662	4.5686961873907	-0.102727329769546	0.793889389102601	0.92022175040272
Merged-chr16-75909282-4	chr16	75909157	75909357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023380)	promoter-TSS (NM_023380)	9.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	7.29357664653656	7.71332047917023	7.43916560037881	7.63701013581575	7.47381712709512	7.53543532552637	7.84828004509264	7.49141693492182	0.0744804612476796	0.701265179307701	0.879638136843261
Merged-chr11-31900761-4	chr11	31900714	31900914	+	738.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290678, intron 2 of 7)	intron (NM_001290678, intron 2 of 7)	29874.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	3.30906398631613	3.56728395137107	3.49870466251655	3.26266597075317	3.93116608607977	3.97947056213792	3.42598504639846	3.80904688230005	1.24954471742325	0.0129796663938906	0.0948834008678995
Merged-chr8-69091241-4	chr8	69091130	69091330	+	981.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007509, intron 1 of 13)	intron (NM_007509, intron 1 of 13)	-2008.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	5.08679381970791	4.72648341492513	4.82600713309341	5.02566495099401	5.50821968299915	5.35890349829913	5.09590601664074	5.48609562763385	0.829108763148224	0.00808945429286407	0.0677490607261762
Merged-chr18-4804230-4	chr18	4804130	4804330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8256.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	7.95532877435992	7.7204186150929	7.97652151346885	7.86127772693176	7.54130740736575	7.59768218478415	7.67536278291485	7.7158013805277	-0.324930294111527	0.0532806723142203	0.240822007534537
Merged-chr11-54787082-4	chr11	54786957	54787157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 1 of 5)	CpG	646.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	5.41449788959988	5.69085709823743	5.41543657718126	4.98421483444375	5.51379976251953	5.56088390994891	5.14061230625822	5.26154919606433	-0.006245743996435	0.984564685137302	0.994329309355676
Merged-chr5-105699322-4	chr5	105699219	105699419	+	847.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122768)	promoter-TSS (NM_001122768)	-650.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	4.23586608685153	3.89704204836655	3.84519140576775	4.12534833702229	4.32031366052581	4.31945069381334	4.13097153504426	3.95236116733176	0.391026003056352	0.358616969605488	0.664601053935353
Merged-chr12-84188442-4	chr12	84188321	84188521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	5594.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	5.9614071427687	5.9302219629151	5.87544226171378	5.50415046794224	5.85707281498763	5.98063959680881	5.57149119265211	5.67695542841438	-0.0511974725328075	0.852433672188577	0.944510839861624
Merged-chr2-31572654-4	chr2	31572542	31572742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033389)	promoter-TSS (NM_001033389)	-9.0	NM_001033389	320267.0	Mm.207261	NM_001033389	ENSMUSG00000026843	Fubp3	A330051M14Rik|AV006371|FBP3|Marta2	far upstream element (FUSE) binding protein 3	protein-coding	5.28049934898429	4.98400431376984	4.99608863765924	4.97221875711229	5.09064665143686	5.17077019898769	5.00686202318158	5.24905152643423	0.142726207311941	0.641390631550658	0.848689304614806
Merged-chr11-34047552-2	chr11	34047452	34047652	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 1 of 20)	intron (NM_010696, intron 1 of 20)	624.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	5.28793988258704	6.30791531151718	5.22114919614647	4.1522246763271	5.8242893717453	6.46411259147155	5.19453504424992	5.03164290838207	0.437169123835508	0.597603709654504	0.825429034783496
Merged-chr9-20727934-4	chr9	20727835	20728035	+	865.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357635)	promoter-TSS (NM_001357635)	294.0	NM_173777	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	4.14389185243045	4.28648571013447	3.99061375213719	4.10437112682608	4.52849581423394	4.27000425747505	4.21915735996134	4.40337700118432	0.570716296205071	0.146664500726005	0.427145355858276
Merged-chr14-31376551-4	chr14	31376460	31376660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 6 of 7)	intron (NM_001347585, intron 6 of 7)	39922.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	6.44253010963484	6.50558826709383	6.69689920810156	7.07945905071103	6.78430859803226	6.77919036589502	7.04107250627729	7.17983966362173	0.322828310984501	0.18324526164457	0.480113201664416
Merged-chr14-73325953-6	chr14	73325842	73326042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009029)	promoter-TSS (NM_009029)	-120.0	NM_009029	19645.0	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb|pp105	RB transcriptional corepressor 1	protein-coding	6.27863173130704	6.4114303450096	5.88905643730482	6.20343118618274	6.24517546896739	6.54482013097018	6.54385795756521	6.00583533943548	0.207737823886305	0.412343122980947	0.707519131955945
Merged-chr17-34150238-3	chr17	34150137	34150337	+	845.8110960000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010388, intron 3 of 5)	intron (NM_010388, intron 3 of 5)	-2954.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	4.30103189785181	4.12502970690651	4.08272166057355	3.88870701776291	3.1713705851934	3.16218438406149	3.195934186291	3.41693205420869	-3.15348601291545	3.64088915153518e-07	1.38733859163342e-05
Merged-chr6-129494662-2	chr6	129494562	129494762	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138648, intron 4 of 7)	MT2A|LTR|ERVL	12503.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	3.39329602657604	3.42160667204186	3.92633156308489	2.87652882286339	3.86061810095321	3.31703467880495	3.32025723466514	3.50636369423067	0.192403520592115	0.759128846944272	0.905467910117288
Merged-chr3-61413786-2	chr3	61413686	61413886	+	810.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49279.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	2.43529628141459	2.54673239363927	2.4355268545737	2.38008990994641	2.59850068323437	2.74293384910769	2.68631980572128	2.63501195167476	1.15500633079034	0.0810079255027537	0.3087963110487
Merged-chr5-105732194-4	chr5	105732080	105732280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	CpG	31370.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	5.37761521261352	5.51360560914894	5.43727078543866	5.64429813533983	5.59353951611157	5.46092334985407	5.32197990237674	5.51680346402588	-0.0488838115992782	0.859619010989801	0.946929887075075
Merged-chr7-19693618-4	chr7	19693543	19693743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007469)	promoter-TSS (NM_007469)	-984.0	NM_007469	11812.0	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	6.95120242491851	6.54820195846003	7.40609927615203	7.16767003989861	6.93409859824615	6.87128606074551	7.32330781138339	6.86687798903743	-0.0601411038446326	0.80706201956921	0.925590801284429
Merged-chr10-121476912-3	chr10	121476804	121477004	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138956)	promoter-TSS (NM_138956)	-654.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	4.94974882161522	4.53867561511934	4.78297613325486	4.98850888810599	4.44637613095526	4.6353062674082	4.48328661596222	4.70602321056825	-0.577233644377652	0.107473107440783	0.36159143101378
Merged-chr1-36617027-4	chr1	36616933	36617133	+	788.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201365, intron 6 of 9)	Lx7|LINE|L1	-23701.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	4.2822112002342	3.72558197703862	3.86533283996365	4.16848660349992	4.14445012552912	4.14356458166066	3.90317777665893	4.15573211227539	0.147046388408609	0.740420287741864	0.897887005267449
Merged-chr6-124863724-3	chr6	124863630	124863830	+	882.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013488)	TTS (NM_013488)	253.0	NM_013533	14788.0	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	3.96316176390693	3.67474356353457	3.53769066185511	3.2346711091953	3.45749610983888	3.53675164297365	3.52375433931591	3.6433510964154	-0.25347135149792	0.633974043607644	0.844935157053758
Merged-chr5-122284351-4	chr5	122284259	122284459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177242)	promoter-TSS (NM_177242)	-39.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	6.44183146837926	6.50944003865625	6.23605772777343	6.4861893703567	6.5549754072238	6.84024859384498	6.6614307804638	6.50637886028822	0.310279928511635	0.150918643664938	0.433957209173573
Merged-chr19-45998402-6	chr19	45998297	45998497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198296)	promoter-TSS (NM_198296)	91.0	NM_198296	71617.0	Mm.210949	NM_198296	ENSMUSG00000039901	9130011E15Rik	AI431055|AW050122	RIKEN cDNA 9130011E15 gene	protein-coding	6.38328887113526	6.44188988991819	6.74839515560778	6.02265533225762	6.21077615176008	6.52465741917063	6.1630820492922	6.3621288445849	-0.135654268509138	0.598113783958377	0.825700950899405
Merged-chr9-60741949-2	chr9	60741849	60742049	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28828.0	NM_026235	67557.0	Mm.44546	NM_026235	ENSMUSG00000034839	Larp6	5430431G03Rik|AI552438|Achn	La ribonucleoprotein domain family, member 6	protein-coding	3.55892378270949	3.36960324095961	3.25089427406179	3.25894428711777	3.0825441848117	3.17351256442461	3.18005049779927	3.18976043916124	-0.7867245464162	0.153458507339961	0.438120574954313
Merged-chr17-79580439-4	chr17	79580340	79580540	+	825.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34460.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	4.12617516418429	3.78384881337766	3.76244995738636	4.01392201956006	4.30064930971649	4.29736547300953	3.96625174780898	4.29367459881719	0.745552190528676	0.0814530982014946	0.309632966036617
Merged-chr2-180120272-4	chr2	180120158	180120358	+	916.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144500, intron 1 of 13)	intron (NM_144500, intron 1 of 13)	892.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	4.48934663935729	4.42094065313332	3.99829141391424	4.49671221893534	4.19529725875479	4.2277991634184	3.92769432269881	4.28690042866969	-0.511405888730867	0.219967075443396	0.527609241046694
Merged-chr11-101449156-3	chr11	101449046	101449246	+	758.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027320, intron 1 of 6)	RLTR12E|LTR|ERVK	734.0	NM_027320	70110.0	Mm.45558	NM_027320	ENSMUSG00000010358	Ifi35	2010008K16Rik|AW986054|IFP35|ifi-35	interferon-induced protein 35	protein-coding	3.29239406260862	3.46626117593201	3.35173130827628	3.48886050381187	3.34086572236517	3.57674417325344	3.39495383910308	3.22961102102031	-0.071914748130038	0.889849523677544	0.95871702912003
Merged-chr2-157566250-4	chr2	157566142	157566342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355426, exon 1 of 2)	5' UTR (NM_001355426, exon 1 of 2)	119.0	NM_001355426	53619.0	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	6.14463113713532	6.46653751189109	6.30699872032945	5.6177739078207	5.76574216573465	5.99718998292844	5.63357429549672	5.68584916192371	-0.609301783887414	0.0398303415719075	0.201215737282995
Merged-chr15-55113594-4	chr15	55113527	55113727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045093)	promoter-TSS (NR_045093)	-45.0	NR_045093	100503794.0	Mm.360519	NR_045093	ENSMUSG00000053749	Gm9920	-	predicted gene 9920	ncRNA	6.18587630442475	6.39656222069883	6.03961133386976	6.27386425380076	6.71177475792926	5.83342787852094	6.25039178619373	6.07914573461465	0.0660492038596278	0.810892336817301	0.926854276252049
Merged-chr13-73425984-4	chr13	73425858	73426058	+	821.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41425.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	3.56730763776218	3.48826183781425	3.90544694450774	3.59037518014158	3.78132238497345	3.627123520945	3.55396675268577	3.38902586350588	-0.126478960951453	0.800666417668955	0.923103471519366
Merged-chr14-121427243-4	chr14	121427108	121427308	+	990.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47978.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	3.93393485242176	4.19004354568159	4.38778053579268	3.20394492157732	4.31352559933172	4.30983622575504	4.06954982070091	4.22225781439839	0.569731598624125	0.284072388267325	0.596035490823689
Merged-chr10-118081682-4	chr10	118081568	118081768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-60119.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	5.47829483350447	5.5940607876237	5.5630106697764	5.83556644030342	5.83805294423284	4.85923583140777	5.90407156798008	5.55908779475592	-0.0399219749623774	0.905188950574231	0.964802029213746
Merged-chr19-29253030-4	chr19	29252950	29253150	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008413, intron 2 of 24)	intron (NM_008413, intron 2 of 24)	1247.0	NM_008413	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	5.42335633324506	5.69372402046249	5.16704134712718	5.18250156970245	5.8594944105629	6.09464015173176	5.21043468795248	5.01319978815036	0.413163280084614	0.255870197021834	0.567467793489678
Merged-chr13-58544229-4	chr13	58544152	58544352	+	960.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66625.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	4.21582053202304	4.18024391686467	4.44635722974817	4.28118358161897	4.53084718720213	4.6189291827756	4.78600788204551	4.4849108794235	0.743092253416812	0.0433665334822354	0.211815445462982
Merged-chr11-32571330-4	chr11	32571277	32571477	+	901.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	38111.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	4.59310367041328	4.25222338533722	4.44431846866573	4.83709366076711	4.01266066646937	4.30790994383511	3.95430101900816	4.02341812579396	-1.1957415340926	0.00467674042056584	0.0452349061979961
Merged-chr6-8003970-3	chr6	8003881	8004081	+	676.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037865, intron 33 of 34)	intron (NM_001037865, intron 33 of 34)	158757.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	3.49745552253578	3.21728618872243	3.90581687804314	3.6861310938621	3.43233298785079	3.09150339461574	3.42982753090664	3.26254469743299	-0.973761120766655	0.0912053541263986	0.330024193043715
Merged-chr5-30148589-4	chr5	30148480	30148680	+	773.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178878, intron 1 of 19)	ID4_|SINE|ID	6400.0	NM_178878	97212.0	Mm.200497	NM_178878	ENSMUSG00000025745	Hadha	C77020|Mtpa	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit	protein-coding	3.85998796203062	3.90877053291776	3.70611990872044	4.17406289519245	3.83456762429324	3.51432325077037	3.89128982969452	3.59013432578534	-0.6219659176485	0.201270691322271	0.503556256669362
Merged-chr15-85091449-4	chr15	85091417	85091617	+	876.4226070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080470, intron 16 of 24)	intron (NM_080470, intron 16 of 24)	40440.0	NM_080470	140557.0	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	3.22815396399245	3.17606475442752	3.45001272881489	3.23158226534545	3.31160578428531	3.27717360560844	3.33121402408873	3.44801041689205	0.261838285771574	0.616771248589895	0.835150401688917
Merged-chr12-99284653-4	chr12	99284550	99284750	+	883.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 4 of 5)	intron (NM_183186, intron 4 of 5)	-121842.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	4.57004866165439	4.10297854634729	4.40840594913236	4.87661086744929	4.45520928205237	4.39937096186954	4.38863189914734	4.40564129326937	-0.28580243144897	0.4855252333108	0.759349088660037
Merged-chr14-122297052-1	chr14	122296952	122297152	+	841.0	f0_balb.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	-63414.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	2.91786689310172	2.77855130670623	3.48981011303259	3.40202761489446	3.01284887787622	3.34884546859087	3.16565497748512	3.17599390044986	-0.0217282300858828	0.973358258722534	0.990485651958264
Merged-chr2-90490473-4	chr2	90490368	90490568	+	953.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-11294.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.83673440372651	5.2390791261852	5.16261437042517	5.33962074955654	5.43314518379326	5.16793430278751	5.16856332389121	4.91390884619653	0.0426183717305856	0.895826817735917	0.960979922829742
Merged-chr1-20829529-4	chr1	20829442	20829642	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-9230.0	NM_008563	17215.0	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	5.4364265014079	5.07634070860137	5.62083436039395	5.58456756202042	5.36264896682611	5.3318708365798	5.46498099291265	5.48872009914199	-0.0714697021733149	0.807602245576473	0.925805086019184
Merged-chr11-67559774-4	chr11	67559655	67559855	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	-26745.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	4.8834513401984	6.09490214638871	5.64226864511097	5.19372716545533	5.55457995087227	5.53057891997018	6.20302294428949	6.01858961811469	0.532142545973678	0.154492625905781	0.439801241388062
Merged-chr6-34938587-4	chr6	34938479	34938679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009292, intron 8 of 8)	intron (NM_009292, intron 8 of 8)	17631.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	4.85585105248977	5.11212500126567	5.44089342963084	5.31668140137268	5.18209951379468	4.95310570214589	5.36071463552495	5.35663037443322	0.031797086326893	0.920836212823289	0.970640619747695
Merged-chr8-71570506-4	chr8	71570414	71570614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357182)	promoter-TSS (NM_001357182)	-80.0	NM_001357182	26457.0	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	8.36572349152013	8.41062845397948	8.25785858622334	8.19377880733567	8.17761967327067	8.22431822050264	8.09960301382926	8.10734000683676	-0.194882065702073	0.20812903489614	0.512299580071882
Merged-chr17-8902176-4	chr17	8902095	8902295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 2 of 21)	ORR1D2|LTR|ERVL-MaLR	52210.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	6.51034242276513	6.49452878273393	6.68782610189936	7.01636539243883	6.66343596632896	6.54388574681944	6.89654344232113	6.68306338834613	-0.0142409191195686	0.951042527157424	0.982556219406068
Merged-chr9-114794099-4	chr9	114793936	114794136	+	878.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 2 of 3)	intron (NM_027294, intron 2 of 3)	-12043.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	4.4807681759677	3.97063650251446	4.07898949335433	4.19594429767468	4.4534838291607	4.53180152070914	4.38200778186967	4.31521443934006	0.552485970735549	0.161784143571287	0.450762655312194
Merged-chr2-170184783-4	chr2	170184675	170184875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42100.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	7.05549382547226	6.65781455114355	6.6811627296951	6.85389824807581	6.93588267479502	6.96273816894315	6.86125745560977	6.89131616761099	0.128449541519555	0.52385840256889	0.782647016014066
Merged-chr15-50871416-4	chr15	50871310	50871510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	17639.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	5.97857262317074	5.65667118126185	5.91605103143413	6.13446485107008	5.92520835602499	5.56332811505261	5.69982703680318	5.41227135085039	-0.432176037991906	0.122476579149109	0.387869746718919
Merged-chr13-112004330-4	chr13	112004235	112004435	+	935.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136399.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	4.85454660043157	4.90427925153268	4.66339448116002	5.095278223631	4.7610375588404	4.66525107725628	4.75953711484209	4.88720820627217	-0.276857682256485	0.414022224034429	0.708838812152508
Merged-chr11-93995261-4	chr11	93995166	93995366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199203)	promoter-TSS (NM_001199203)	-825.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	8.29562020551183	8.6135030283361	7.98536679081605	8.31790842973835	8.4978402331125	8.39330860239667	8.33955575504821	8.19810644117326	0.0493768982046653	0.788542295584581	0.91812687233996
Merged-chr2-72366701-4	chr2	72366579	72366779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 4 of 19)	intron (NM_023057, intron 4 of 19)	80978.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	7.3726207556218	7.55228098118079	7.66456050724835	7.5526154869568	7.35942385983455	7.62065286906254	7.28526708694628	7.55811338231375	-0.109253501533099	0.549262958270993	0.797926160923547
Merged-chr19-59076334-4	chr19	59076234	59076434	+	762.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175172)	promoter-TSS (NM_175172)	-265.0	NM_001114312	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	3.28702124790226	3.4508475918961	3.35189872145594	3.76994009139731	3.81160921548102	3.75127206914449	3.45943463062627	3.58049889934093	0.517031624673044	0.332994804176164	0.643932741578704
Merged-chr2-167146102-3	chr2	167146003	167146203	+	856.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008420, intron 1 of 1)	B3|SINE|B2	42715.0	NM_008420	16500.0	Mm.205341	NM_008420	ENSMUSG00000050556	Kcnb1	Kcr1-1|Kv2.1|Shab	potassium voltage gated channel, Shab-related subfamily, member 1	protein-coding	3.39238657332648	3.16917762913193	3.8071770464672	3.62223785600826	3.40102110405281	3.50806470920166	3.54976803752848	3.8047309778433	0.161310414857944	0.764770843241738	0.907812114625849
Merged-chr5-125390148-4	chr5	125390056	125390256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019639)	promoter-TSS (NM_019639)	-139.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	7.15464323874631	7.43093054646295	7.06779083490226	6.78688451596179	7.76935508986625	7.91610165725355	8.11774614099026	7.55299628844614	0.972512764616459	8.45660266076626e-06	0.000237067784181812
Merged-chr6-31385780-4	chr6	31385679	31385879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040300, intron 2 of 2)	intron (NR_040300, intron 2 of 2)	12994.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	6.37235809900774	6.13793672909902	6.13553329781227	6.66063113280587	6.26893176951669	6.43720711805095	6.7639743672058	6.65804687307028	0.261864289793603	0.302780781868301	0.615268735657298
Merged-chr8-120620449-4	chr8	120620344	120620544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308449, intron 2 of 3)	intron (NM_001308449, intron 2 of 3)	13938.0	NM_197988	68918.0	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	5.52945915862793	5.60868416089024	5.9283217165238	5.30151897280782	5.29025164098438	5.08763742875239	5.07603895343027	5.2675307787001	-0.72704329997992	0.0193231010392754	0.125005617089521
Merged-chr10-18965082-4	chr10	18964987	18965187	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46876.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	5.03071304468988	5.16570536379108	5.36053101811087	5.05110886975512	5.52628369615755	5.28171418016933	5.52054973847485	5.59369036757638	0.61247080486292	0.033356605596323	0.179543998014268
Merged-chr15-67636444-1	chr15	67636344	67636544	+	809.0	f0_balb.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	409675.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	4.01912909793806	4.17456487612788	3.97338652527067	4.03341615817687	3.72826603701612	4.14343598523626	3.64055348344095	3.52614767765148	-0.782930988648374	0.0968669224089963	0.340909303839305
Merged-chr2-168978238-4	chr2	168978143	168978343	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040326)	promoter-TSS (NR_040326)	-26.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	5.38830511447016	5.0011023344714	5.41721821453535	5.69071813569303	5.15361330755467	5.13503810614595	5.33388862691445	5.41342051377745	-0.27330575084323	0.388943282073211	0.689305925221948
Merged-chr3-115769001-2	chr3	115768901	115769101	+	890.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53946.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	3.01574821191657	2.97059527481583	3.07478505460423	3.07058483321787	3.22046293429308	2.99583227604512	2.81567750487771	3.07319536713846	0.0287177486785825	0.961232911554421	0.986114717027689
Merged-chr7-29170227-8	chr7	29170205	29170405	+	944.0104369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182696)	promoter-TSS (NM_182696)	95.0	NM_182694	243897.0	Mm.389886	NM_182694	ENSMUSG00000031493	Ggn	AI593290	gametogenetin	protein-coding	4.43839046369024	4.07475749197003	4.39254501889788	4.23738463298699	4.95752322512095	5.29759903882107	4.62754909209275	4.64677070652414	1.3487187588101	0.00041122901492764	0.00657920207991335
Merged-chr2-174453894-4	chr2	174453840	174454040	+	903.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080971, intron 1 of 3)	intron (NM_001080971, intron 1 of 3)	3345.0	NM_001080971	545486.0	Mm.45285	NM_001080971	ENSMUSG00000016255	Tubb1	2810484G07Rik|M(beta)1	tubulin, beta 1 class VI	protein-coding	4.00796462867292	4.04148050234639	3.83076245918493	3.94357001625301	4.83600694872198	4.68183552575945	4.32990829114428	4.58169058116972	1.59671771680847	5.72889496344352e-05	0.00127152171687854
Merged-chr7-101302782-3	chr7	101302692	101302892	+	830.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111111)	promoter-TSS (NM_001111111)	-704.0	NR_152152	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	3.59077397102351	4.18624038841612	3.75736047206729	3.131372758197	3.86157612167056	3.82557352423431	3.68904131867672	3.80606093473329	0.211996500599654	0.701916344883188	0.879918696943051
Merged-chr17-78415631-2	chr17	78415531	78415731	+	749.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 1 of 9)	intron (NM_001360407, intron 1 of 9)	2521.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	3.16169035782582	3.2080852262272	2.96769645795109	3.32881514508666	3.27832051779026	3.20949475650479	3.26455566254018	3.32925439839241	0.323054825032446	0.560064149049633	0.804203083823139
Merged-chr3-152149508-4	chr3	152149426	152149626	+	907.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016867, intron 1 of 5)	intron (NM_016867, intron 1 of 5)	16374.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	4.92937075349209	4.47649626476567	5.16574928933718	5.10553911893728	4.45230007011003	4.77446859522599	4.39901437671132	4.36660886205022	-0.94975288883135	0.0132407630369871	0.0962189149780197
Merged-chr3-89102044-4	chr3	89101941	89102141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134469)	promoter-TSS (NM_134469)	-74.0	NM_001253751	110196.0	Mm.39472	NM_134469	ENSMUSG00000059743	Fdps	6030492I17Rik|AI256750|Fdpsl1|mKIAA1293	farnesyl diphosphate synthetase	protein-coding	8.03380764658758	8.36849059771219	7.79511988414765	7.94393931608233	8.17015806952865	8.09483996321391	7.87916083306784	7.96876555221212	-0.0225277638231904	0.904791283468178	0.964691960037782
Merged-chr4-9647464-4	chr4	9647375	9647575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	-3758.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	5.26873294606555	5.25582213292194	5.39686035491209	5.28857390185278	5.77715681166997	5.81728380034359	5.53860364197887	5.86695471163603	0.778688944232403	0.00354793720978719	0.0364255910364118
Merged-chr11-65788346-4	chr11	65788258	65788458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009157)	promoter-TSS (NM_009157)	1.0	NM_009157	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	7.89946876828561	7.96930869861819	7.41628052768718	7.75409967954885	7.9722338591033	7.96581629738399	8.19917830864019	7.77511501137874	0.270859437429794	0.161128514542776	0.449763393593735
Merged-chr19-55655021-4	chr19	55654929	55655129	+	973.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	47175.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	5.52125717190372	5.53350599212198	5.33396309684422	5.42313480540952	5.09685213817998	5.18265393817163	4.7803812224615	5.20862905163302	-0.693213810592339	0.0210842308939859	0.132644089268159
Merged-chr14-31573129-4	chr14	31573036	31573236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009937, intron 1 of 16)	intron (NM_009937, intron 1 of 16)	4247.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	6.08662062145765	6.27588692139893	6.14975414226664	6.30588396003934	5.93205252252836	6.3451219112761	5.94655738050595	6.3496524551174	-0.101579764207611	0.678279098789733	0.868034533256964
Merged-chr1-183508043-1	chr1	183507943	183508143	+	560.0	f0_balb.idr	Intergenic	Intergenic	88795.0	NM_001308052	78772.0	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	2.85067478870701	2.85869570111147	3.12473722194744	2.89015012262285	2.73130498334914	2.68421659601706	2.646266648833	2.78711855305397	-1.04730736898399	0.105210824654751	0.356864488353611
Merged-chr4-141834708-4	chr4	141834645	141834845	+	850.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8740.0	NM_007919	13706.0	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	4.31470104656238	4.17944349653788	4.12217192952397	4.44790973041154	4.66605559268165	4.29952389498529	4.2963125705567	4.62837467238472	0.480117362815892	0.224658646607479	0.533192551327857
Merged-chr6-29270676-2	chr6	29270576	29270776	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1812.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	3.31483229176659	3.72328552063252	3.93880075075941	3.32809842160984	3.26362269686971	3.2292216107619	3.2409834476296	3.37378836956316	-1.11288048054991	0.0496032075390063	0.230644545951067
Merged-chr18-56439956-1	chr18	56439856	56440056	+	696.5	f0_balb.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	7824.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	3.42553230333032	3.75784588209053	4.0053896778122	3.71009483835555	3.80043656246822	3.72869186168812	3.65321092364233	3.95980483317378	0.154868977433692	0.74670146815225	0.90024329344347
Merged-chr12-52701351-3	chr12	52701251	52701451	+	986.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198111, intron 1 of 13)	intron (NM_198111, intron 1 of 13)	1968.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	4.10764126334467	4.38078301503462	4.41079393262799	4.66798203519717	3.79749836818528	4.13132323081661	3.99058960484956	4.00464899991692	-1.14399887072667	0.00799091653335135	0.0671480939849962
Merged-chr19-5622107-4	chr19	5622020	5622220	+	951.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-12026.0	NM_178637	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	4.77995427040416	4.9795728715933	5.05152756141901	4.68171146665171	4.55769196019646	4.70939870071563	5.11312699375836	4.69985767377113	-0.186328886874561	0.601199709634436	0.827071740947179
Merged-chr10-44146880-3	chr10	44146772	44146972	+	766.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23575.0	NR_001582	70365.0	Mm.87073	NR_001582	ENSMUSG00000091358	Speer5-ps1	1700007C10Rik|SPEER-5|Speer5-ps	spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1	pseudo	3.26561863855075	2.9416702982719	3.09565319331262	3.1698603043105	3.09614515752026	3.14247653131975	3.25276012154449	3.09412889289851	0.0854836136102915	0.878766899913091	0.954708519232108
Merged-chr1-177487974-3	chr1	177487877	177488077	+	737.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42156.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	3.24882512825529	3.46663474539411	3.57059022438622	3.29690191136071	3.23789988236311	3.23240885017416	3.50717816387354	3.12027250341275	-0.416630946863257	0.444822966698596	0.731090189956575
Merged-chr8-14992968-4	chr8	14992880	14993080	+	870.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037736, intron 26 of 27)	intron (NM_001037736, intron 26 of 27)	-18045.0	NM_029116	74901.0	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	3.99106297402576	3.88258389164766	4.38229290083965	4.26622651773438	3.94545239902436	3.69828085963661	4.07159429780798	4.41604102859296	-0.23412387980019	0.615415186709874	0.834461661846382
Merged-chr2-31114411-4	chr2	31114304	31114504	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	MT2B|LTR|ERVL	-17904.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	5.11104580927402	5.1542549392856	4.76180063651132	4.58524603085932	5.07909734234299	5.05152822388086	4.92494005455642	4.79829741956791	0.120613545113388	0.729083839799825	0.892424767302202
Merged-chr7-142095356-4	chr7	142095264	142095464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008748)	promoter-TSS (NM_008748)	-80.0	NM_008748	18218.0	Mm.39725	NM_008748	ENSMUSG00000037887	Dusp8	5530400B01Rik|AI593498|Nttp1	dual specificity phosphatase 8	protein-coding	7.29468309937333	7.82858868373246	6.9680897018857	7.27313500956929	7.09568971464983	7.14592612740884	6.87838893680639	7.13767613249741	-0.42525757695462	0.066792262852382	0.275574221978304
Merged-chr11-98741862-4	chr11	98741782	98741982	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313983)	promoter-TSS (NM_001313983)	97.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	5.52662646073914	4.9031851927764	5.06815569202645	5.27952450466518	4.97122533581198	5.37300384953264	5.23445102287262	4.99362358647237	-0.129948044850234	0.691457531070982	0.874522567993416
Merged-chr4-40773327-4	chr4	40773229	40773429	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15444.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	5.37297204039888	5.20021865409333	5.06172020480518	5.31113801567784	5.28182608165358	5.2717593326621	4.96537902046095	5.34219976389907	-0.0398699710767857	0.894248757016399	0.960481560907683
Merged-chr8-114452919-4	chr8	114452824	114453024	+	865.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 4 of 8)	intron (NM_019573, intron 4 of 8)	13272.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	3.35502619483888	3.75338935504903	3.48704697476442	4.02441684711879	4.00109549850455	3.72409641880136	3.98133576781735	3.66126643069722	0.449954232896263	0.397035006397488	0.695573922424755
Merged-chr8-107100486-4	chr8	107100360	107100560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-3915.0	NR_104410	21750.0	Mm.6402	NM_009353	ENSMUSG00000031921	Terf2	TRF2	telomeric repeat binding factor 2	protein-coding	5.53520688709159	5.75216914893493	5.33177929138468	5.52292562291213	5.41496619504667	5.34219398779501	5.79425118510915	5.44875508754139	-0.0611408526909792	0.830667432974467	0.935017440942484
Merged-chr17-27975490-3	chr17	27975385	27975585	+	698.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 2 of 24)	intron (NM_181413, intron 2 of 24)	66179.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	4.09884566769073	4.23870596627268	4.14010217611504	4.46803610814137	3.17716088459728	3.30611900195767	3.25496570454209	3.33754406523668	-3.65493920226942	9.34220794656199e-09	4.98104134403248e-07
Merged-chr11-88954201-3	chr11	88954093	88954293	+	690.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029023, intron 1 of 12)	B2_Mm2|SINE|B2	1249.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	3.64069235564317	3.50170428946705	3.73975558585479	3.38886907428273	3.45561038458349	3.65121945611387	3.46455654751079	3.68923199631531	0.00787555669156466	0.987329054988866	0.995258250959001
Merged-chr16-96126825-3	chr16	96126719	96126919	+	833.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008251, intron 4 of 5)	B3A|SINE|B2	906.0	NM_008251	15312.0	Mm.2756	NM_008251	ENSMUSG00000040681	Hmgn1	HMG-14|Hmg14	high mobility group nucleosomal binding domain 1	protein-coding	3.38345509572228	3.26451108858395	3.48903788647317	3.41705973127437	3.37759309857868	3.25279836399478	3.37088653757278	3.32603367602562	-0.199842873510796	0.698457070041791	0.878383574853872
Merged-chr12-70227728-4	chr12	70227621	70227821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045174)	promoter-TSS (NR_045174)	-38.0	NM_133198	110095.0	Mm.256926	NM_133198	ENSMUSG00000021069	Pygl	-	liver glycogen phosphorylase	protein-coding	7.68545458316848	7.67544427632475	7.59384279621397	7.87480650522061	7.61559367196166	7.45400960875024	7.64105526717853	7.38956135380909	-0.246339145759195	0.164833310112369	0.455072150356386
Merged-chr12-112543069-4	chr12	112542969	112543169	+	849.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31909.0	NM_178915	104885.0	Mm.37751	NM_178915	ENSMUSG00000054013	Tmem179	AI839735	transmembrane protein 179	protein-coding	4.00823615754952	4.23714395458279	4.00881006660864	4.20409976294499	3.93426490101747	4.08006083267161	3.99220785381529	4.39394535025179	-0.0492416688976054	0.907676366940668	0.965746814189597
Merged-chr11-110268661-4	chr11	110268559	110268759	+	967.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_147219)	TTS (NM_147219)	-16883.0	NM_001166557	76184.0	Mm.159704	NM_147218	ENSMUSG00000044749	Abca6	6330565N06Rik	ATP-binding cassette, sub-family A (ABC1), member 6	protein-coding	4.8327560358687	4.71435438571199	4.68136109582789	4.64993814620396	4.72226073424281	5.13938487538312	4.65966189724054	4.86563844026408	0.283713604686768	0.404691135493385	0.701751859610301
Merged-chr10-87860284-4	chr10	87860198	87860398	+	867.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111276)	promoter-TSS (NM_001111276)	-813.0	NM_001111274	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	3.85360501274528	3.75033335674834	3.63114517667165	3.64567593510697	3.92435503979651	4.02726572649016	3.83804159813318	4.31807184154937	0.897047589494154	0.0448700977640208	0.216454328704637
Merged-chr7-74724839-3	chr7	74724741	74724941	+	979.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-170061.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	4.63079621115245	4.72835987016166	4.75813055727321	4.86313129638732	3.14462978079071	3.53702808797229	3.4758657877777	3.69944417903462	-4.45622753107688	2.81397061600272e-11	2.35088749385514e-09
Merged-chr7-79465753-2	chr7	79465653	79465853	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360095, intron 1 of 22)	CpG	520.0	NM_001360095	18975.0	Mm.3616	NM_017462	ENSMUSG00000039176	Polg	AA409516|PolgA	polymerase (DNA directed), gamma	protein-coding	4.96065806005809	4.39211304418298	5.27557718735817	4.42731153368159	4.75094896904872	4.67645376277442	4.64879387049915	4.99011231760629	-0.0656117890933091	0.870924891211157	0.951515750732959
Merged-chr9-44454325-4	chr9	44454197	44454397	+	842.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009476, intron 1 of 4)	intron (NM_009476, intron 1 of 4)	470.0	NM_009476	22269.0	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	3.94389146239324	3.97107130878082	3.83520498680422	4.12914876284819	4.1670054234703	4.26361194333379	4.16437387062831	4.2232210806837	0.552208268863195	0.182000784973906	0.478680358338744
Merged-chr1-131700584-4	chr1	131700484	131700684	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311096, intron 4 of 4)	intron (NM_001311096, intron 4 of 4)	11889.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	5.28346250901299	5.16437142674771	5.09304933249923	5.09158798547757	6.55185884189275	6.03190883910699	6.4581834003988	6.22618016464993	1.93377189119463	2.34013639526794e-13	2.83279878365267e-11
Merged-chr6-91156717-4	chr6	91156590	91156790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144919)	promoter-TSS (NM_144919)	-125.0	NM_144919	232232.0	Mm.206218	NM_144919	ENSMUSG00000034245	Hdac11	-	histone deacetylase 11	protein-coding	7.40308223284595	7.43416291743735	7.18185130067684	7.65639624954654	7.22869071662188	7.01618013809411	7.63633434206054	7.21111328044966	-0.194707068687045	0.36345325768901	0.668574361907056
Merged-chr3-86224750-4	chr3	86224612	86224812	+	816.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030695)	promoter-TSS (NM_030695)	22.0	NM_001077688	80877.0	Mm.439825	NM_030695	ENSMUSG00000028080	Lrba	C80285|D3Ertd775e|Lab300|Lba	LPS-responsive beige-like anchor	protein-coding	4.30465657119272	4.12236424638126	3.75321277769149	4.23664719110885	4.03529872964276	4.050963802567	4.24441033478309	4.41921826068792	0.167475792093707	0.699753909114935	0.878897269268221
Merged-chr4-129514512-4	chr4	129514465	129514665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010807, intron 1 of 1)	intron (NM_010807, intron 1 of 1)	984.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	6.47047111530022	7.32771960946737	6.24795841823795	5.29456874268306	6.65418431989112	7.25848603137426	6.43802180988234	5.99754744605133	0.175974099733698	0.790062389071274	0.918796372769079
Merged-chr13-60620768-4	chr13	60620670	60620870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	18559.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	7.5597575746299	8.15570117520905	7.70860278126296	7.39384352830954	7.19486612595477	7.15115302301173	7.00438598643451	7.17206778342135	-0.801448014474795	0.000293134403418825	0.00497723054632091
Merged-chr12-35076141-4	chr12	35076040	35076240	+	865.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	28951.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	4.05022970026384	4.14568881058448	3.78323963772314	4.10107960344522	5.05676010304996	4.96714800493718	4.96273311968301	5.45890861765122	2.35777895882647	5.86439645361399e-09	3.26365813269578e-07
Merged-chr17-43550207-4	chr17	43550096	43550296	+	779.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-6557.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	4.32523154131745	4.3751874565482	4.2415926959646	4.09457258567999	3.97426056211894	3.95720015154888	4.17869495703897	4.28173296235449	-0.391411368283961	0.343148264050578	0.651847936494656
Merged-chr6-31809983-4	chr6	31809879	31810079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143848.0	NR_152155	434003.0	Mm.332979	NR_152155	ENSMUSG00000084973	Gm13848	-	predicted gene 13848	ncRNA	6.99025902117932	7.31549281643415	6.86784828314284	6.7731769789598	6.75454510781396	6.190336881813	6.33023589623287	6.23646638523766	-0.838421423908144	0.000810284049947645	0.011357859076649
Merged-chr5-73256799-4	chr5	73256673	73256873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028194)	promoter-TSS (NM_028194)	-155.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	9.03496238983752	8.99818087224186	9.12614385207248	9.18278064973945	8.94025225968599	9.04842486291635	9.16659338635841	8.80039198665075	-0.117174965969758	0.440540039672891	0.727944976505159
Merged-chr3-95929191-4	chr3	95929095	95929295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253758)	promoter-TSS (NM_001253758)	-62.0	NM_001253758	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	8.26518371555263	8.16578882162377	7.97115803815747	8.00891620682877	8.24378660778669	8.32691957819281	8.29288615330307	7.85475661553711	0.112863335633136	0.528731406104944	0.785231446234849
Merged-chr3-81127267-3	chr3	81127172	81127372	+	654.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	90856.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	3.21549642800947	3.20319681260287	2.96258475290532	3.27769876100158	3.30169542888976	3.20437795667248	3.25954535454605	3.27043823948953	0.309515265078537	0.572613581909748	0.811251013052168
Merged-chr7-126502518-4	chr7	126502416	126502616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347658)	promoter-TSS (NM_001347658)	-91.0	NM_001347658	233871.0	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	7.39872139005929	7.26398587459351	7.61924832726558	7.31753257544695	7.47715644977496	7.54693901961095	7.58185911920104	7.63066346059653	0.210508679092118	0.239761815786053	0.550267823751707
Merged-chr4-109476716-4	chr4	109476653	109476853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013876)	promoter-TSS (NM_013876)	-248.0	NM_013876	29864.0	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	6.92860092016246	6.80812909034827	6.94328265605743	7.32484663323525	7.16144215041584	6.93416230553867	7.46864131275259	7.34623360219276	0.289626677677553	0.194332406710329	0.494755332451119
Merged-chr13-103774385-5	chr13	103774204	103774404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001361085, exon 1 of 12)	exon (NM_001361085, exon 1 of 12)	304.0	NM_001361085	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	6.71630834462616	6.54364595685312	7.04647724967808	6.3551463430784	6.28455709324111	6.81928237726575	6.59359564090622	6.76927997066953	-0.0768529298857977	0.761428755649176	0.906544072900439
Merged-chr12-91746611-4	chr12	91746509	91746709	+	892.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	MTC|LTR|ERVL-MaLR	39827.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	4.15627822895423	4.34640844129199	4.46965880348847	4.34270252592084	4.19522983477139	4.00149806467317	4.40884966262893	4.84027818795017	0.152462166921467	0.719935333686609	0.888028373825666
Merged-chr19-12461086-4	chr19	12461000	12461200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010821, exon 2 of 2)	5' UTR (NM_010821, exon 2 of 2)	321.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	6.564957483016	6.72420198547272	6.9399887680744	6.54741044978229	6.54568918507705	6.57065583524357	6.48344459914623	6.40719181671537	-0.275295301480903	0.203069562629906	0.505715803231957
Merged-chr2-43862887-4	chr2	43862768	43862968	+	945.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 5 of 14)	intron (NM_001301831, intron 5 of 14)	114044.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	5.18301440401019	4.79635686300032	5.214086617442	5.56183599351005	4.93021689963354	4.79992500340197	4.81201078419612	5.2967813782461	-0.488322033203974	0.170506362026739	0.463684279922871
Merged-chr10-22070352-3	chr10	22070279	22070479	+	967.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2300.0	NM_053264	114671.0	Mm.288194	NM_053264	ENSMUSG00000069712	4930444G20Rik	-	RIKEN cDNA 4930444G20 gene	protein-coding	3.30355044453294	3.20025718203622	3.30393303301997	3.07194931776882	4.26487991460336	3.87811037525454	4.6029887139392	4.12554684696165	3.20034115545882	4.16750293924136e-10	2.86884614808763e-08
Merged-chr2-102990449-4	chr2	102990358	102990558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83055.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	5.78588158676883	5.29579046151372	5.36388204514344	5.58793530451993	5.1980934065407	5.34977617171486	5.18117795511655	5.33023828308487	-0.466530557429153	0.111557062672407	0.36907238385704
Merged-chr6-136979600-4	chr6	136979514	136979714	+	909.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25091.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	3.8220554066829	3.82236669372608	4.27906083416937	4.08074303424193	3.91503598094177	3.82748224193854	4.00779807711512	4.11308501676625	-0.130321061927239	0.768601075903771	0.90939721515425
Merged-chr7-100608491-3	chr7	100608423	100608623	+	783.916687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153424)	promoter-TSS (NR_153424)	-222.0	NR_003559	52443.0	Mm.473730	NM_198831	ENSMUSG00000030706	Mrpl48	1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e|L48mt|MRP-L48	mitochondrial ribosomal protein L48	protein-coding	3.70607628738304	3.5174573085841	3.70661244357643	3.36585602584717	3.60410882049171	3.926753964854	3.78887272166202	3.65202533687044	0.548802804132385	0.255546920967708	0.567153328754178
Merged-chr3-148316370-3	chr3	148316270	148316470	+	927.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	638265.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	3.86035703996855	3.66746106524616	3.99869981621756	3.96044015403228	3.85968565211823	3.58221128682174	3.74496694737991	3.80924972030167	-0.356057672846835	0.439745036147122	0.727425871224001
Merged-chr11-120237402-4	chr11	120237297	120237497	+	926.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198423, intron 2 of 27)	CpG-2934	4450.0	NM_198423	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	4.0925756808788	4.54094778568461	4.03454933687765	4.10290816302587	4.92153523848633	4.62223541306874	4.69953721723997	5.11301751586163	1.43209229045899	0.000228039632518238	0.00405486710042859
Merged-chr9-15710285-4	chr9	15710194	15710394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172289, intron 1 of 10)	intron (NM_172289, intron 1 of 10)	556.0	NM_172289	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	7.42671447274408	7.36831220796066	7.37751161641868	7.90054018937856	7.59264323919815	7.37879565329031	7.70364990834749	7.64844908160276	0.0446757172222006	0.829000101427083	0.934333879868872
Merged-chr3-131868411-4	chr3	131868305	131868505	+	914.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-216887.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	4.27977901175421	4.0666101645862	4.54188101678473	4.57574070380685	4.54333217387911	4.35922636597152	4.83002177492356	4.53891670446635	0.419401489995763	0.290268135551319	0.602422956741611
Merged-chr11-58978720-4	chr11	58978606	58978806	+	997.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053168, intron 1 of 5)	intron (NM_053168, intron 1 of 5)	613.0	NM_053168	94091.0	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	4.74393734542456	4.79574870634934	4.62194605856607	4.63879384212806	5.07106197939349	4.87987098438633	4.93552333407036	4.92297094843859	0.537240189504951	0.0955299996567163	0.33841287242151
Merged-chr9-78194091-4	chr9	78194006	78194206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010357, intron 1 of 6)	B2_Mm2|SINE|B2	2140.0	NM_010357	14860.0	Mm.2662	NM_010357	ENSMUSG00000032348	Gsta4	GST5.7|mGsta4	glutathione S-transferase, alpha 4	protein-coding	5.03456914650307	5.31178901641245	5.07019217841614	5.05728557822076	5.15586827967477	5.34220094443447	5.23558189247621	5.1659562809229	0.189711631362369	0.523252708513794	0.782449675195448
Merged-chr9-48984523-3	chr9	48984371	48984571	+	936.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175482)	promoter-TSS (NM_175482)	-914.0	NM_001359739	235323.0	Mm.21630	NM_175482	ENSMUSG00000032267	Usp28	9830148O20Rik|AU022237|mKIAA1515	ubiquitin specific peptidase 28	protein-coding	4.02861253473171	4.3173618873952	4.16307155283298	3.87537128883419	3.80827243975656	3.83085075815011	3.86402131171144	4.02677048627147	-0.592006682332839	0.183311037997224	0.480231739919189
Merged-chr8-60964149-4	chr8	60964050	60964250	+	916.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007711, intron 1 of 11)	intron (NM_007711, intron 1 of 11)	-9351.0	NM_173876	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	4.39437297251253	4.48109075872145	3.94873586269091	4.52413485780833	4.59285427714878	4.0118753990369	4.60233036334326	4.30555775789415	0.0981529529271876	0.819869258293206	0.931038192981049
Merged-chr6-8259233-4	chr6	8259148	8259348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026632)	promoter-TSS (NM_026632)	-40.0	NM_001302354	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	9.17213541703265	9.12594380049147	9.38371449403829	9.43570664073127	9.1449630933199	9.11358955127583	9.50407090399944	9.10599115806452	-0.0742903916927368	0.65455995036862	0.855659697629251
Merged-chr19-29252351-5	chr19	29252185	29252385	+	874.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048177, intron 1 of 23)	intron (NM_001048177, intron 1 of 23)	482.0	NM_008413	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	3.79157567780178	3.49184208070577	4.1685223358846	3.31557237733071	3.81292880764078	4.29694891445654	4.02120043022241	3.99143446852814	0.877837712829126	0.0888378381729331	0.32524372406703
Merged-chr10-58498746-4	chr10	58498642	58498842	+	824.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162956, intron 1 of 15)	intron (NM_001162956, intron 1 of 15)	805.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	3.36747103502963	3.81988640876806	3.29966878301021	3.58278183984574	3.89122385904726	3.78389853861105	3.70200050309173	3.94787506283682	0.88882470389148	0.0756634143322647	0.297149186891159
Merged-chr5-86066739-4	chr5	86066635	86066835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1152.0	NM_007683	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	6.80998312880107	6.69217871816302	6.72328738013133	7.09161821484416	7.11886843118653	6.8218192071897	7.07652916106152	6.84817553766622	0.174533706092853	0.414356849757713	0.709044594374843
Merged-chr15-8445495-4	chr15	8445414	8445614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-4777	-1051.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	6.2043244212727	6.24509032260907	6.10521628236277	5.8579807938724	6.22161777566528	6.05530556538482	6.36837825603149	6.25743778641313	0.208082949867827	0.38708085309099	0.688085997159096
Merged-chr4-132624412-4	chr4	132624294	132624494	+	731.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-14652.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	3.57881858407441	3.49734562238656	3.63452528571767	3.34658724511384	3.77265683706784	4.04737757257195	3.90541304942256	3.26179436411522	0.816381345236397	0.116766288444672	0.378113263509545
Merged-chr15-34541189-4	chr15	34541070	34541270	+	837.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45859.0	NM_152894	67724.0	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	4.83791590221037	3.43985853251018	3.62101022037125	4.0826500937383	4.05199060847262	4.09037320815341	3.89555426014805	3.68245532655421	-0.444944286149546	0.451188309721781	0.735800313712694
Merged-chr13-49198958-4	chr13	49198879	49199079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11432.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	7.73235655190698	7.76001991681255	7.96886837853219	8.16448855280004	8.12219484370993	7.99982826428232	8.06149908168815	8.02425240330265	0.16179694828421	0.361687260828227	0.666956931049025
Merged-chr1-155025970-3	chr1	155025872	155026072	+	749.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57292.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	3.39008304688828	3.36285094660614	3.21147196915653	3.09107342301923	3.59426080977953	3.32377918558141	3.53248532295068	3.44319222137143	0.788178473544454	0.130135554048004	0.40154840478511
Merged-chr16-24891694-4	chr16	24891651	24891851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-167888.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	7.24415035089562	7.20088490345242	7.1149658193403	7.248300898288	6.79416462067671	6.65030264877425	6.97195169593058	6.95145265069726	-0.495089816245213	0.00984817975102297	0.0780431514693903
Merged-chr17-43017664-4	chr17	43017581	43017781	+	924.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 1 of 5)	intron (NM_178589, intron 1 of 5)	1126.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	4.22249632112842	4.01142727119966	4.52474362655214	4.85585989557611	4.34951366679411	4.08023644193692	4.71260588215663	4.22058845116204	-0.217662822863494	0.634380583694637	0.845111112089176
Merged-chr13-49326463-4	chr13	49326366	49326566	+	975.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15083.0	NM_001039179	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	5.234977351381	5.23647843190336	4.49037994836696	4.6867959123674	4.74826740070939	5.00162587055431	4.87566698021972	4.43886798047671	-0.339153717279595	0.385911325176757	0.687298864016961
Merged-chr4-106909192-2	chr4	106909141	106909341	+	747.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2229.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	3.25495741916674	2.88215221779416	2.98001456411246	2.85926279772944	2.9884014594677	3.02574911156732	2.84221649460079	3.03846146556083	-0.0833036632756406	0.889927946526563	0.958787008730746
Merged-chr7-81578088-4	chr7	81577977	81578177	+	939.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004185, intron 2 of 9)	intron (NM_001004185, intron 2 of 9)	6785.0	NM_001004185	434204.0	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	4.47402331185154	4.36110844057018	4.38854332688739	4.48926383159547	4.49675124869693	4.51744316347073	4.60946408127663	4.59101024985142	0.267599017659019	0.452278012566148	0.736641267137564
Merged-chr7-126175004-2	chr7	126174904	126175104	+	790.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 1 of 23)	intron (NM_028816, intron 1 of 23)	25497.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	2.69029637607533	2.6213148407417	2.89180744065535	2.68180265422369	2.96945043108232	3.06323615087211	2.94124324367845	3.11760484245484	1.35226860730727	0.0260228759758395	0.152554611446801
Merged-chr7-126752030-4	chr7	126751937	126752137	+	858.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-7589.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	4.1020239979064	4.32994006894027	4.23676467815283	3.92838795430733	3.74973835092756	4.02198506593229	4.25863387829888	4.19096004686446	-0.226552992719012	0.607921202787713	0.830283203337722
Merged-chr7-118279163-3	chr7	118279073	118279273	+	748.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35266.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	3.31999916312584	3.09283976914519	2.98248451452256	3.07706633576512	3.61437681717418	3.49642715912006	3.30767520939748	3.92622880404377	1.69115670690413	0.00219147469790395	0.0250903936821787
Merged-chr6-124805771-4	chr6	124805660	124805860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2901.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	7.31314464982285	7.4695010159053	6.94683391382884	7.06482765079149	7.25891172733647	7.4281089794229	7.34764836900657	7.33975021828438	0.176525879127595	0.37465912262911	0.677891254741963
Merged-chr7-97034387-3	chr7	97034287	97034487	+	940.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153591, intron 9 of 13)	L2a|LINE|L2	-47364.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	3.67846362643201	3.77151439559259	3.56007579436055	3.04887837466647	4.20704397947415	3.96366385900123	4.09139611151261	3.88665519049353	1.51125531658194	0.00365496884493548	0.03730384677569
Merged-chr8-14873960-4	chr8	14873857	14874057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14579.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	5.99619432407144	5.75204290407643	6.49498619227337	6.74013703951113	5.72883534621631	5.54588733567285	5.96640817175159	5.70015721091154	-0.899083032943124	0.0037374986920191	0.0379611043663281
Merged-chr5-21701679-6	chr5	21701582	21701782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359963)	promoter-TSS (NM_001359963)	-60.0	NM_001359965	242864.0	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	7.66025184225676	7.95599231761463	8.56470877648518	7.8583573947877	7.67039636861504	7.98898522054671	7.92065835272944	8.11036875086721	-0.160721658673279	0.482124173882606	0.757067585271902
Merged-chr3-148989463-14	chr3	148989242	148989442	+	905.031616	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-34707.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.43702373570421	4.58279028848653	5.00848094554831	4.88407693225743	4.18679492384821	3.98754350194967	4.13690250930637	4.20338724694598	-1.46043050045625	0.000343042890884179	0.00566004866255099
Merged-chr9-35039319-6	chr9	35039102	35039302	+	998.1904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77526.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	4.59034191906681	4.47271683035495	4.45339671240481	4.43461045587821	5.13302969339525	5.31756768174091	5.00521364411212	4.78946025714994	1.21634477641474	0.000316196231105322	0.00528943161782507
Merged-chr8-40497876-1	chr8	40497776	40497976	+	728.0	f0_balb.idr	intron (NR_155265, intron 5 of 6)	intron (NR_155265, intron 5 of 6)	12603.0	NM_001361938	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	3.76729596808104	3.43580082321938	3.81423723180681	3.49236520941239	3.65353435513557	3.43444371724048	3.75139223610566	3.50480159722881	-0.103451261023135	0.835968204209008	0.937569151339979
Merged-chr10-21605160-4	chr10	21605064	21605264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	12019.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	7.44552765191073	7.26785495375362	7.61490852989319	7.39319720408064	7.35439590525171	7.2396671659793	7.37159287366094	7.49719388734136	-0.083296940424682	0.64784180692139	0.85185825899816
Merged-chr16-11352140-3	chr16	11352018	11352218	+	861.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 3 of 20)	intron (NM_028964, intron 3 of 20)	29214.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	3.66355000476385	3.23150221769251	3.71075313979903	3.92425551071065	3.2183572020955	3.3925366457654	3.26787848681705	3.27738503561105	-1.31203334586953	0.0191350569955297	0.124237364032182
Merged-chr3-36330829-4	chr3	36330726	36330926	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-108551.0	NM_198192	229214.0	Mm.330975	NM_198192	ENSMUSG00000058400	Qrfpr	AQ27|Gpr103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding	4.86830792035314	5.14588903901794	4.43747634419078	4.95745573687266	4.99458002568407	4.88971336631581	4.91673544250976	5.12989819445131	0.197667417249357	0.568211397737517	0.808586868024762
Merged-chr10-127062671-4	chr10	127062570	127062770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009870)	promoter-TSS (NM_009870)	-865.0	NM_009870	12567.0	Mm.6839	NM_009870	ENSMUSG00000006728	Cdk4	Crk3	cyclin-dependent kinase 4	protein-coding	6.28960019513486	6.08617117101091	5.62662988501285	6.13579837241302	5.80739595221252	6.06477837556003	5.94946154690673	6.06085322731151	-0.148620140195997	0.569324429135903	0.809366519988776
Merged-chr4-125015937-4	chr4	125015849	125016049	+	908.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14065.0	NM_145552	230737.0	Mm.90760	NM_145552	ENSMUSG00000028869	Gnl2	BC003262|HUMAUANTIG|Ngp-1	guanine nucleotide binding protein-like 2 (nucleolar)	protein-coding	4.63576671853428	4.77749410891932	4.3749862626577	4.3039571962103	5.07078333318977	4.64482046878827	4.3559814218236	4.88310275488235	0.528229320196557	0.177122778055214	0.472365013832599
Merged-chr10-80158527-4	chr10	80158424	80158624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021565)	TTS (NM_021565)	8842.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	7.47081769436482	7.57488177927472	7.19925144523462	7.2426859755079	7.3400134787438	7.12826404652052	7.1855026169053	7.12460505417783	-0.234774209664606	0.223981707273351	0.53210045864795
Merged-chr9-94512461-4	chr9	94512377	94512577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25604.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	6.47474578915508	6.77375858716715	6.52925817665995	6.84426686679995	7.17414522226759	7.16676051477895	6.97931281330458	6.45297702186705	0.425773549320099	0.0776394709344236	0.30130973321959
Merged-chr1-138192197-4	chr1	138192113	138192313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16908.0	NM_001268286	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	7.17934599783432	7.13494314820722	7.21278179723753	7.45852072020133	6.73840815426199	6.79177429102132	6.99512965835175	6.62526364526997	-0.650671286597078	0.00135009962596664	0.0171635544341274
Merged-chr16-93543892-4	chr16	93543776	93543976	+	815.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59939.0	NM_145482	224440.0	Mm.10628	NM_145482	ENSMUSG00000022948	Setd4	AY037804|C21orf18|ORF21	SET domain containing 4	protein-coding	3.69536428047874	3.74401318372589	3.99157296934939	3.70192982130531	3.69163640120425	3.50158714248038	4.01620287137607	4.03218794195357	0.128836654125695	0.787567483819198	0.917631916858002
Merged-chr14-30196487-4	chr14	30196371	30196571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 4 of 46)	intron (NM_001083616, intron 4 of 46)	157015.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	5.99586590236527	6.04115235027755	5.54808319300126	5.89693930308034	5.77722243377979	5.66666657561111	5.87986332829739	6.23920499222154	0.0317176534928295	0.9077639237684	0.965825535574155
Merged-chr2-59346688-4	chr2	59346571	59346771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 17 of 20)	intron (NM_175464, intron 17 of 20)	40011.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	7.32237839510154	7.08868856699782	7.53013029262778	7.80493790929418	7.0225019117617	6.81426348688093	7.26658745003258	7.28754908691712	-0.48889123783572	0.0336038798273921	0.180506419306765
Merged-chr19-32277009-4	chr19	32276888	32277088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168525, intron 2 of 9)	intron (NM_001168525, intron 2 of 9)	-65975.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	7.37186067247181	7.31393863366271	7.23118069667649	7.27808618625403	7.00171694506977	7.03666733003559	7.18424616663198	6.85394810636827	-0.375486318943663	0.0430915336543611	0.21121142225477
Merged-chr1-54914650-4	chr1	54914551	54914751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	11736.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	5.85052686858119	6.00872939085153	6.12065781401617	6.24589283594669	6.14593360167039	6.233887588391	5.96269599140929	6.19453348468383	0.089629158028671	0.711079363649017	0.884240356833917
Merged-chr6-98302250-2	chr6	98302150	98302350	+	815.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128092, intron 2 of 3)	MTC|LTR|ERVL-MaLR	40504.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	3.72099854803625	4.07896368506	3.66685284460401	3.4804744501136	3.57457273792012	3.78644972178125	4.07146716267424	3.66483547374485	0.102428088280372	0.837972574482028	0.938474063450959
Merged-chr15-8280167-2	chr15	8280067	8280267	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111061.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	2.90162583519769	2.95718339657947	3.02112250722009	2.62211683262014	2.84800871862263	2.80790756349261	2.69282707802738	3.22825537393212	0.137885345903929	0.832942240534138	0.93619030363624
Merged-chr2-102900506-4	chr2	102900459	102900659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	1106.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.74742355139466	5.42876541153869	4.87113539969054	4.79594243163654	4.77243348971615	5.35549936772911	5.35359492705959	5.23885676738454	0.384886898936313	0.287626237340599	0.599483117556337
Merged-chr19-41796965-3	chr19	41796868	41797068	+	736.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027667, intron 1 of 11)	intron (NM_027667, intron 1 of 11)	5116.0	NM_001163495	71085.0	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	3.13653622984459	3.02891895897653	3.44593699889484	3.16559004344296	2.9773704458062	2.91412216324096	3.12518006319925	3.07571417682901	-0.709930613575634	0.22649821791327	0.535149593469051
Merged-chr11-95293253-4	chr11	95293149	95293349	+	938.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195003, intron 5 of 14)	intron (NM_001195003, intron 5 of 14)	16997.0	NM_001195004	217127.0	Mm.90213	NM_177619	ENSMUSG00000038909	Kat7	Hbo1|Hboa|Myst2	K(lysine) acetyltransferase 7	protein-coding	5.27303961394091	5.05813448731824	4.90660944775035	5.29223803579349	5.04482141937109	5.22712362311616	4.99363564225342	5.29890008224198	-0.021779111323465	0.944414322421674	0.980029938254562
Merged-chr10-53509318-4	chr10	53509213	53509413	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037973, intron 3 of 3)	intron (NR_037973, intron 3 of 3)	9676.0	NR_037973	100502868.0	Mm.297722	NR_037973	ENSMUSG00000112739	Gm20597	B230314j19	predicted gene, 20597	ncRNA	4.97870965590161	5.12789454498427	4.83646359783324	4.73851982111993	4.86383206044604	5.18462241229712	4.8864660947369	4.79490313487868	0.0335465412363354	0.919782606503456	0.970406583631903
Merged-chr11-116635603-3	chr11	116635507	116635707	+	975.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-8588.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	4.2757752520317	4.90495569079091	4.66133885255367	3.51667193311284	3.48636939521387	3.65761306350133	3.77158307356663	3.30212015933247	-2.44899068910738	5.58775722153396e-05	0.00124563410983892
Merged-chr16-31066898-4	chr16	31066795	31066995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 1 of 3)	intron (NM_198626, intron 1 of 3)	14537.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	5.77202182392943	6.02297105799527	5.84506295610756	5.5060375878012	5.89162906258678	5.89856008120304	6.00832544705479	5.71858732646735	0.16039635873247	0.54700328774082	0.796659648847089
Merged-chr6-22003083-4	chr6	22002994	22003194	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081351, intron 1 of 21)	intron (NM_001081351, intron 1 of 21)	17184.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	4.66658853555782	4.6856855559279	4.81113130534544	4.98015065334547	4.54125064367221	4.23194002721113	4.75367065558877	4.26660446112168	-0.721075388448604	0.0571319577646187	0.250494201266491
Merged-chr6-30318595-2	chr6	30318495	30318695	+	701.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-14056.0	NM_001169576	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	3.23593491899221	3.17524815634615	3.29316876826939	3.50790457560578	2.91700884094586	3.15888544993355	3.22430034028754	3.39773049070678	-0.516054527314401	0.373294022350711	0.676922319351088
Merged-chr3-75517867-3	chr3	75517774	75517974	+	790.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019745, intron 7 of 7)	intron (NM_019745, intron 7 of 7)	38978.0	NM_019745	56426.0	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	3.51893037196104	3.57463683464485	3.94283781095524	3.55500447452878	3.27349634401679	3.31934577021674	3.50563952469215	3.67470835204169	-0.674845371011041	0.198153939949271	0.499640697605649
Merged-chr1-64088896-3	chr1	64088787	64088987	+	794.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	32502.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	3.35107136460476	3.46537337389638	3.45075706621117	3.25377441673795	2.94715241170718	2.80315254162515	2.98803078259326	3.12479102615003	-1.70030124696353	0.00568362290862775	0.0522472406459396
Merged-chr5-117891289-4	chr5	117891175	117891375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 2 of 27)	MER47A|DNA|TcMar-Tigger	24436.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	5.50092004204449	6.32713462955353	5.99144617097703	5.55571259548842	5.98302885736018	6.20799508753637	5.84966607498701	5.94366853468276	0.18682653294188	0.529551416860587	0.785711552346522
Merged-chr16-90738347-4	chr16	90738288	90738488	+	878.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029844)	promoter-TSS (NM_029844)	64.0	NM_029844	77037.0	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|C21ORF61|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	4.21905497347868	3.96549197961749	4.0821996543713	4.35792714976964	4.08493277019906	4.05050626034731	4.01620502070078	4.37957961152933	-0.0938874935025671	0.824041190538742	0.932476232435989
Merged-chr5-127624644-1	chr5	127624544	127624744	+	726.666687	f0_balb.idr	Intergenic	B3A|SINE|B2	-7252.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	3.24290688060328	3.33416292977848	3.18893189070761	3.34319425048064	2.86167037479592	2.90989008121862	2.86804645542761	3.07104419826276	-1.52649816628943	0.0115520156296934	0.0874486125916037
Merged-chr1-153549630-4	chr1	153549487	153549687	+	977.5476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028749, intron 1 of 11)	CpG	127.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	3.3158872118828	3.29058998583856	3.78704217481334	2.96536203715563	3.28508530734095	3.31146813382577	3.12263405310752	3.0649947361613	-0.604962888303335	0.319302141628846	0.631171312014998
Merged-chr8-84813254-4	chr8	84813172	84813372	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9551.0	NM_201227	23863.0	Mm.304252	NM_201227	ENSMUSG00000053226	Dand5	Cerl-2|Cerl2|Cerr2|Dte|GREM3|coco	DAN domain family member 5, BMP antagonist	protein-coding	3.91874618432298	3.8972552513149	3.69502860557499	3.53930271074592	4.18734957448422	4.44525414732314	4.17724701738179	3.91700439136909	1.18084972428009	0.00794918381528914	0.0669139522669436
Merged-chr12-112840366-4	chr12	112840289	112840489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10868.0	NM_001359234	71963.0	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	5.89716261336868	5.91902252019009	5.7555488119709	5.95344637256976	5.59279003418783	5.85425976823043	6.11096046899172	5.72608072077059	-0.100810351708879	0.699104516676594	0.878624019192029
Merged-chr1-165734491-4	chr1	165734382	165734582	+	965.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-26388.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	5.22463095101805	4.64479111608756	5.00311231852238	5.40210872157691	4.80101271109787	4.87043616691856	5.17020514006078	5.19244919965293	-0.185673497701271	0.602890131980383	0.827863197473409
Merged-chr5-134582701-4	chr5	134582616	134582816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020022)	promoter-TSS (NM_020022)	26.0	NM_020022	19718.0	Mm.332739	NM_020022	ENSMUSG00000023104	Rfc2	2610008M13Rik|40kDa|AI326953|Recc2	replication factor C (activator 1) 2	protein-coding	6.98296969681409	7.06871417191048	6.61180714616532	6.72313087359276	7.28978143841598	6.90067055418501	6.83252156702156	6.79260322435043	0.173264959228586	0.444775134839247	0.731081677662176
Merged-chr16-91640384-4	chr16	91640299	91640499	+	841.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357351, intron 4 of 21)	intron (NM_001357351, intron 4 of 21)	6573.0	NM_010256	14450.0	Mm.4505	NM_010256	ENSMUSG00000022962	Gart	Gaps|Prgs	phosphoribosylglycinamide formyltransferase	protein-coding	4.06866421276783	3.75886514097068	3.77171329242192	4.1613116590433	4.78737427765442	4.57261887698588	4.82501098081443	4.39646667292854	1.62901841067962	0.00017114374862117	0.0031948179604265
Merged-chr15-79895302-4	chr15	79895213	79895413	+	916.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347041, intron 1 of 7)	intron (NM_001347041, intron 1 of 7)	290.0	NM_001347041	80287.0	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Gm20117|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	5.42649942498491	4.94919313613268	5.56128715005982	5.17137485506962	4.46609261503547	4.23648522595042	4.32075822755596	4.71456059434769	-1.74330713285502	4.67357964725482e-06	0.000139714710504809
Merged-chr9-59548055-4	chr9	59547929	59548129	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	L2c|LINE|L2	8489.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	4.76225067151345	4.39351488921755	4.13775684588168	4.27869044829427	4.56934105237133	4.21213188502323	4.12040916611775	4.03064334373111	-0.347738954330818	0.422487143136924	0.714750979996272
Merged-chr18-6137684-4	chr18	6137596	6137796	+	917.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1598.0	NM_001039692	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	4.60337411617872	4.76105118757399	4.88257957899702	5.27322564283187	5.00566790658926	4.69264905813618	4.58342517179561	5.19372235037849	-0.0561621754958207	0.882663782352893	0.955807298790492
Merged-chr10-87732200-4	chr10	87732102	87732302	+	952.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126063.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	4.62028775714194	4.503063264277	4.81965215975487	5.09442200290543	4.85116433909695	4.66515604123543	5.08822815098462	4.95555241530661	0.200961153202745	0.581275474399038	0.81622819081178
Merged-chr6-15750267-3	chr6	15750154	15750354	+	920.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	29593.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	3.4022679892626	3.90095784344548	3.72375957540305	3.60510213398655	3.44156184558233	3.17073569509333	3.39057081474436	3.72147500768229	-0.728362152093142	0.179191307518955	0.475405646050607
Merged-chr5-137032857-4	chr5	137032767	137032967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039385, exon 2 of 2)	3' UTR (NM_001039385, exon 2 of 2)	2572.0	NM_001039385	381677.0	Mm.389697	NM_001039385	ENSMUSG00000037428	Vgf	Gm1052	VGF nerve growth factor inducible	protein-coding	7.08913427642414	6.63087335184221	6.35186134396431	6.69731031445424	6.86882062738531	7.37539907739005	7.00829872541774	7.15192684950143	0.545043161145767	0.0211667454942983	0.132908798037346
Merged-chr1-155817766-1	chr1	155817666	155817866	+	906.6666869999999	f0_balb.idr	Intergenic	Intergenic	-4867.0	NM_001024945	104009.0	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo	quiescin Q6 sulfhydryl oxidase 1	protein-coding	3.1540657403798	3.47019583064943	3.15452866264839	3.49293389924356	2.53696197658615	2.80780391289336	2.61354838775133	2.61840265518669	-4.20238381587719	1.43223984631195e-05	0.000381246821318768
Merged-chr19-6304936-4	chr19	6304863	6305063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1494.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	6.94553325412966	7.42691881213268	7.14115855859502	6.69303697145417	7.05835994927344	7.18760360445885	6.9877658633897	6.83209186454338	-0.0678922426478305	0.769083944375332	0.909663272515192
Merged-chr2-175142005-4	chr2	175141867	175142067	+	917.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64950.0	NM_001164689	626832.0	Mm.441314	NM_001164689	ENSMUSG00000078887	Gm6710	1600017I02Rik|2310011F05Rik|2900089K14Rik|3100002L24Rik|WF-4	predicted gene 6710	protein-coding	4.77113610945955	4.37882310645043	5.25093310673553	4.31483096689598	4.33139163821828	4.79327247657352	4.63555561382096	4.87345505042152	-0.116891236593999	0.783738867156174	0.915796582538115
Merged-chr5-30867096-3	chr5	30866999	30867199	+	921.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310516)	TTS (NM_001310516)	-2480.0	NM_144525	68796.0	Mm.205169	NM_144525	ENSMUSG00000038828	Tmem214	1110039B18Rik|4921530J21Rik|AI841294|AU018742|C76280	transmembrane protein 214	protein-coding	3.66055961664779	3.93815752524307	4.04020304394208	3.82038459799036	3.60160611668958	3.72207859061767	3.700170464593	3.48255852527479	-0.736490360851326	0.120654689567145	0.384581082293665
Merged-chr6-115675922-4	chr6	115675780	115675980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152134)	promoter-TSS (NR_152134)	8.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	5.43673583965735	5.94097683691071	5.70320111100169	5.37949650071535	5.66727005593783	5.24589337428169	5.78771341123152	5.24343710472959	-0.189728326594295	0.544311706277542	0.795184841840149
Merged-chr12-85818599-4	chr12	85818482	85818682	+	932.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360813)	TTS (NM_001360813)	6311.0	NM_001360451	58520.0	Mm.143795	NM_021446	ENSMUSG00000021252	Erg28	0610007P14Rik|1190004E09Rik|AU019315|C77855|ORF11	ergosterol biosynthesis 28	protein-coding	4.5357314002476	4.81906237399982	4.2826341085537	4.24828742671233	4.33798317889663	4.41113421836124	4.47648258993072	4.02316990817623	-0.382049514319222	0.356380531816422	0.662848627231153
Merged-chr12-76178072-2	chr12	76177972	76178172	+	720.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104386)	promoter-TSS (NR_104386)	-813.0	NR_104386	13983.0	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	3.01692247546822	3.08103098798587	3.01726714515168	3.17300349847239	2.97998871031569	3.30779684593439	3.06877335790484	3.24870799611988	0.282704110490215	0.619578797956572	0.836720209857499
Merged-chr5-32721081-2	chr5	32721002	32721202	+	879.833374	f0_balb.idr|f1_balb.idr	Intergenic	URR1B|DNA|hAT-Charlie	25240.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	3.87200292850637	3.87529510109986	3.75196737060345	3.19148060139572	2.74178390091345	2.83507819743131	2.79807370644755	2.88598171772731	-4.66276966309416	2.17198950755635e-06	7.02727459810698e-05
Merged-chr16-75767814-4	chr16	75767733	75767933	+	983.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-1015.0	NM_030201	110920.0	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	4.85350717782231	4.70100657878107	4.81906144352507	5.02092434830319	4.47891739182275	4.71704942572407	4.72315284881441	4.74234385746281	-0.430043093057443	0.211106870180758	0.515749988419294
Merged-chr9-13518164-4	chr9	13518066	13518266	+	997.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86805.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	5.80441070303121	5.61309969134943	5.97449026418937	6.09691924822685	5.41254621007657	5.31800554442319	5.44298995889459	5.34291584260806	-0.870823867341694	0.00170145644250935	0.0206036012455551
Merged-chr17-57305849-3	chr17	57305755	57305955	+	864.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 19 of 25)	ZP3AR|Satellite|Satellite	26755.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	3.69970876373206	4.00035120067184	3.58627381551648	3.14941613111043	3.93013103522712	3.76601833935966	4.27792332380771	3.39362090300015	0.671310314705596	0.238453102171852	0.548836356743826
Merged-chr4-136505500-4	chr4	136505443	136505643	+	891.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024452, intron 1 of 4)	intron (NM_024452, intron 1 of 4)	35782.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	5.41305831687778	4.4213004923688	5.01845418822747	5.26167536771437	4.81648911090449	4.47143635254182	4.26699737947223	4.33569212457725	-1.20278542463601	0.00479427089758365	0.0460590374165349
Merged-chr11-8568012-3	chr11	8567885	8568085	+	786.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	Lx8|LINE|L1	96550.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	3.72186512185281	3.43633848443527	3.62303289841437	3.42123943460146	3.46815564309977	3.63276532354723	3.11914978680838	3.89774975521174	0.0204738704929858	0.970267004464008	0.989328178694086
Merged-chr10-40094982-4	chr10	40094853	40095053	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	B3A|SINE|B2	47301.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	5.80473990677192	5.93032424101464	6.24415393055137	5.99594663907477	5.81405254445265	5.85686468048102	5.29191811005115	5.41468921381343	-0.617407183480235	0.0296495825155809	0.165940213388625
Merged-chr11-6291679-7	chr11	6291560	6291760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252282)	promoter-TSS (NM_001252282)	1.0	NM_001361903	18293.0	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	7.60225875647173	7.98748074757408	8.16591121446374	7.56839033199192	7.95978803426833	8.13952413266146	8.10944523618875	8.06271490311621	0.281890270235774	0.150830207394007	0.433763272180902
Merged-chr17-6106464-4	chr17	6106365	6106565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001103181)	promoter-TSS (NM_001103181)	-365.0	NM_001103181	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	7.0253332240972	7.53241683238821	7.08860046452322	7.3091821314809	7.31114997921535	7.24098250260307	7.2643491612244	6.99604094354872	-0.0679798348616273	0.740175921576699	0.897731615982446
Merged-chr11-44496272-3	chr11	44496190	44496390	+	992.033325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22674.0	NM_028862	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	3.50388202682528	3.50587260670339	3.50431079687808	3.26460976969346	4.48244434349631	4.37199280387006	4.53498416731734	4.0185372491164	2.66752243207897	4.60822208533489e-09	2.60685565396542e-07
Merged-chr3-89520085-4	chr3	89519968	89520168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080466)	promoter-TSS (NM_080466)	-96.0	NM_080466	140493.0	Mm.120250	NM_080466	ENSMUSG00000000794	Kcnn3	KCa2.3|SK3|SKCA3	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	protein-coding	5.74556768082007	6.17161990671988	5.92804329498576	6.07956146503859	5.19939765037131	5.42723150359705	5.47790247321492	5.64101660334844	-0.942713479067747	0.000620141502775101	0.00917311970615729
Merged-chr12-83703373-4	chr12	83703269	83703469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362271, intron 3 of 11)	L1ME2|LINE|L1	14806.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	5.04587844374922	5.56916657016127	5.67175145352084	5.55857400913055	5.30721968812525	5.36901553067063	5.32609790881715	5.57018481251387	-0.166872746793045	0.575795084822719	0.813185666420437
Merged-chr2-181291166-4	chr2	181291022	181291222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-3156.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	5.01284131402275	5.25966464410137	5.36258565406188	4.95538756021847	5.33977994190806	5.25990265037152	5.09379645091101	5.33083018356286	0.219003431532282	0.473288344791645	0.751096038380678
Merged-chr7-17059042-3	chr7	17058996	17059196	+	916.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162950, intron 1 of 14)	(TG)n|Simple_repeat|Simple_repeat	-2417.0	NM_016868	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	3.61057107636542	3.79071738795734	3.47759529591718	3.77680953392174	4.22572064996108	4.25796314765919	4.11244805654928	4.2511791722123	1.43608948222726	0.00140195422804284	0.0176900726817695
Merged-chr10-123360671-3	chr10	123360559	123360759	+	951.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252387, intron 1 of 4)	intron (NM_001252387, intron 1 of 4)	96583.0	NM_001252387	268354.0	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|Sam2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding	4.41992483149227	4.5222683465842	4.69807379820743	5.20887282869805	3.15464305446491	3.49131269874689	3.50521916331813	3.36092424992258	-5.16421056337994	1.64206337984051e-10	1.21371162319489e-08
Merged-chr7-19276979-4	chr7	19276877	19277077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177691, exon 5 of 5)	3' UTR (NM_177691, exon 5 of 5)	3072.0	NM_177691	232941.0	Mm.134068	NM_177691	ENSMUSG00000030402	Ppm1n	A930002H20|C79127	protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)	protein-coding	6.95861671918621	7.6249241309771	7.22286068229232	6.25169201871577	7.48400054839581	7.47312904943025	7.03840128735165	6.96812166062769	0.218467525486857	0.465676909246903	0.746129622151024
Merged-chr12-31984819-4	chr12	31984722	31984922	+	869.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011158, intron 4 of 10)	Lx8|LINE|L1	-34577.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	4.38940480932083	4.28451213459531	4.5136429508847	4.50457197359993	4.28525054991973	4.38059908765071	4.45323086418032	4.5493036958247	-0.0367265764192692	0.92141649142126	0.970886721487516
Merged-chr7-127637103-4	chr7	127637012	127637212	+	879.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21840.0	NR_155451	320683.0	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	3.67582071359948	4.22635784265183	3.617573811563	3.84319375124516	3.88453838057076	3.60836543290262	4.00849907620349	3.93355322087719	0.00514890437930759	0.991505419308746	0.996745793587504
Merged-chr14-55724570-4	chr14	55724493	55724693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2330.0	NM_001360387	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	7.13999766307219	7.03009197570353	6.96984602999661	6.89459163816824	7.50971601522486	7.39538984309975	6.96047035184216	7.01629758122608	0.333057657390864	0.11721561108458	0.378682551510059
Merged-chr18-39185829-3	chr18	39185751	39185951	+	860.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 11 of 21)	intron (NM_001361073, intron 11 of 21)	192706.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	3.20782813468008	3.05194615083359	3.2707815502372	3.4213679317097	3.32104006559161	3.38409498098817	3.57780080998629	3.68294209371072	0.829466575501289	0.129794908753302	0.401001424113517
Merged-chr13-105327099-4	chr13	105327014	105327214	+	854.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-32629.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	4.61210999659591	3.94654098659333	4.29554915603737	4.4875352120116	4.41420140897209	4.51176580574729	4.13540380083476	4.29289026992783	-0.0375869945334338	0.928090138638489	0.973855706255698
Merged-chr4-119131312-1	chr4	119131212	119131412	+	1000.0	f0_balb.idr	intron (NM_011400, intron 2 of 9)	intron (NM_011400, intron 2 of 9)	22567.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	3.49553203784424	3.32722452509516	3.71727321819006	3.98725591639649	3.67059285095408	3.54934434018306	3.70189769635309	3.94636677395887	0.160224341654598	0.761676149970956	0.906626309449702
Merged-chr3-94758144-3	chr3	94758038	94758238	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	28377.0	NM_001293727	70737.0	Mm.87634	NM_001037711	ENSMUSG00000068876	Cgn	6330408J11Rik	cingulin	protein-coding	4.04131154413494	4.24198660190173	3.80097817645387	3.64101659041303	3.9226684661515	3.68787865986684	3.78563294140049	3.85069047369224	-0.355412233894343	0.456507412102785	0.739906664679482
Merged-chr9-16215540-4	chr9	16215438	16215638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	162693.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	7.9683149543861	8.04301135840833	8.01253595933359	8.63380272763809	8.37047174360372	8.26534259281945	8.65030379034538	8.40156213046851	0.281453256915378	0.17628696290438	0.471307205534908
Merged-chr14-109478426-4	chr14	109478322	109478522	+	829.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR80A|LTR|ERVL	-564183.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	4.53926348188889	4.83982080660864	4.45349923826768	5.17252073082222	4.61425642491711	4.28149407131081	4.43369838966233	4.49462803584285	-0.731911258298399	0.0678604248799008	0.277967266071615
Merged-chr5-72170311-4	chr5	72170210	72170410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2121.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	7.07430572715543	7.37764725919427	7.41106312777341	7.45125957918168	7.20368368015609	7.30140613772687	7.08845061809788	7.2000822665762	-0.19614984728502	0.29799329438863	0.61017191079025
Merged-chr4-9243683-4	chr4	9243594	9243794	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-25599.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	5.67742559944011	5.48158460332199	5.89290943796867	6.51936311401876	5.46258255875324	5.11644757873223	5.79548498618159	5.8665814548656	-0.619428939174982	0.079431519501738	0.305137800710471
Merged-chr18-50138644-1	chr18	50138544	50138744	+	594.5	f0_balb.idr	intron (NM_008292, intron 2 of 23)	L1MB1|LINE|L1	10443.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	3.15670487114775	3.08495370163724	2.98961187304439	3.17693776500226	2.89865565284027	2.75313067341052	2.91879056344381	2.98815596994683	-0.944501706077159	0.119237779115051	0.38204933061581
Merged-chr16-91917934-4	chr16	91917811	91918011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010587, exon 39 of 39)	3' UTR (NM_010587, exon 39 of 39)	13719.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	5.35580559299605	5.89456581910278	5.35673062390429	5.14937957420758	5.17475977778294	5.61666786263304	5.06908440568844	5.35298930683471	-0.267675449823044	0.420936071502498	0.713593114282418
Merged-chr4-99484404-4	chr4	99484301	99484501	+	675.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-171898.0	NM_010425	15221.0	Mm.4758	NM_010425	ENSMUSG00000067261	Foxd3	CWH3|Genesis|Hfh2	forkhead box D3	protein-coding	3.38113564800348	3.5869754086065	3.62277361626445	3.79648434859424	3.70769179026548	3.6234273958334	3.9828162354779	3.82401268986389	0.514179583725766	0.294178295471011	0.606522696834359
Merged-chr8-104111969-3	chr8	104111894	104112094	+	802.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 1 of 11)	B3|SINE|B2	-6121.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	3.2517993661367	3.1886543313597	3.25222988980179	2.83435706567514	3.57282280810257	3.63996093236873	3.35255177442616	2.98811640423777	1.00928904173471	0.0898419820021864	0.327346020178914
Merged-chr7-67672845-4	chr7	67672738	67672938	+	832.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001168477)	TTS (NM_001168477)	25428.0	NM_001360653	67009.0	Mm.249356	NM_025905	ENSMUSG00000030555	Ttc23	1600012K10Rik	tetratricopeptide repeat domain 23	protein-coding	3.87005762166862	4.17185220267037	4.02487446624097	4.23561722955578	4.00875320870425	3.81513776324669	3.95903035842245	4.36027256837585	-0.108990047289964	0.805496192952032	0.925182413943856
Merged-chr17-23968868-2	chr17	23968751	23968951	+	840.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6379.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	3.19727252560605	3.03829490646726	3.19766599871757	3.07889450486844	3.42402309780166	3.4287894620567	3.45754314243885	3.31299236373433	1.04463130854103	0.0454863078898961	0.218492101202442
Merged-chr6-127447791-4	chr6	127447684	127447884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346513, intron 1 of 5)	intron (NM_001346513, intron 1 of 5)	944.0	NM_001346513	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	5.23945458960585	5.48314342075133	4.99518335419509	5.13184138910031	5.60713975844805	5.5913337210683	5.33515541510844	5.1713826398564	0.396695222502299	0.193859769120563	0.494171274799718
Merged-chr6-50385686-4	chr6	50385582	50385782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	-2845.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	5.65729544358286	5.60130215886432	5.73667566447042	5.54282877242516	5.82918226644379	6.37071423373618	6.16629287555404	5.54181513842745	0.613401359663003	0.0315564524139423	0.173140886947661
Merged-chr4-86697046-4	chr4	86696952	86697152	+	859.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26993.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	4.63443618541847	4.16413565633161	3.93274851851059	3.95485937833937	4.29208478916529	4.05636817157461	4.07069007214092	4.13361330553166	-0.118188376303432	0.79101979552659	0.918930451102165
Merged-chr7-126099188-4	chr7	126099120	126099320	+	868.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16809.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	3.64099494214207	3.46163306419361	4.19930596810144	3.87189965844187	3.77739855111526	3.8736227397854	3.50767477764574	4.07860797776199	0.00546946249826768	0.991522536994856	0.996745793587504
Merged-chr17-86937977-4	chr17	86937872	86938072	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9915.0	NM_029121	74915.0	Mm.159369	NM_029121	ENSMUSG00000053375	Atp6v1e2	4930500C14Rik|Atp6e1|E1	ATPase, H+ transporting, lysosomal V1 subunit E2	protein-coding	5.40366637004121	5.58981479273861	5.51740601974985	5.92557730075963	5.45308510102616	5.35768578862601	5.34811445024024	5.21058670009157	-0.514610591689744	0.0804102836894258	0.307451846945082
Merged-chr4-41346630-4	chr4	41346503	41346703	+	974.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-2393.0	NM_001355509	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	4.66656205356747	4.28808683962662	4.30450932720751	4.31342338626625	4.46337316388002	4.56744199096302	4.19012730408476	4.62870115331003	0.176775198884289	0.646716208367678	0.851401409677112
Merged-chr11-78245631-7	chr11	78245493	78245693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009143)	promoter-TSS (NM_009143)	110.0	NM_009297	20926.0	Mm.20755	NM_009297	ENSMUSG00000002052	Supt6	5131400N11Rik|AI132449|SPT6|Supt6h|mKIAA0162	suppressor of Ty 6	protein-coding	5.17750813188367	5.32841713357306	4.91945434221985	4.46190809154542	4.991558569648	4.94434646152677	4.93082640450536	4.80378136110966	-0.155590709985871	0.675990593848373	0.867014726144001
Merged-chr1-57995984-4	chr1	57995878	57996078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199007)	promoter-TSS (NM_199007)	4.0	NM_199007	68549.0	Mm.32800	NM_199007	ENSMUSG00000026039	Sgo2a	1110007N04Rik|4932411A20Rik|5730576N04Rik|AU018846|AV008062|D1Ertd8e|Sgol2|Sgol2a|Tripin	shugoshin 2A	protein-coding	6.81322324713395	6.91827768443008	6.87176209449357	7.03446441566323	7.30074356868299	7.2064374436552	7.4525676765677	6.85280698687708	0.418216026662447	0.0450861485476389	0.21713766527011
Merged-chr5-122054658-4	chr5	122054558	122054758	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-4807.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	5.1156320483296	5.28927603618639	5.00896909821632	5.4467213907272	5.46862203676559	5.11085930421366	5.25171474372919	5.44375557824188	0.160602985473457	0.60217027376981	0.827465354865177
Merged-chr1-64324194-4	chr1	64324104	64324304	+	950.787476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-202815.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	4.72365782506172	4.32692642220438	4.87249803549936	4.80248883810513	4.86855792160194	4.64480988753597	5.20741078397471	4.86920340667003	0.43562390500161	0.229793096278774	0.538856256177995
Merged-chr1-172376442-4	chr1	172376326	172376526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026234)	promoter-TSS (NM_026234)	-105.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	8.53232527523319	8.67324897905777	8.60900827916864	8.36243772306429	8.71941885548198	8.74978417164214	8.62747045049549	8.58045013628296	0.160183028784109	0.300202282401227	0.612266425760371
Merged-chr17-34287898-4	chr17	34287817	34288017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010378)	promoter-TSS (NM_010378)	-146.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	7.25985657966693	7.42400143806752	6.94504872784387	6.76975934149337	8.04023683108882	7.92394922218765	7.70108667248477	7.7412680728877	0.990875302356641	3.56805536951118e-06	0.000109801389168369
Merged-chr5-17999860-4	chr5	17999760	17999960	+	981.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 4 of 7)	intron (NM_001081143, intron 4 of 7)	37290.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	4.88348524967509	4.15834753617963	4.91880014236436	5.15621005595672	4.79146120300167	5.0216791661013	4.71387743843977	4.84557965271478	0.0100452202452574	0.979941411861491	0.992772119265666
Merged-chr1-72717179-2	chr1	72717079	72717279	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5919.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	3.22734996389677	3.48407730073252	3.5247619354269	3.27871360041596	3.19684366090169	3.92492539160121	3.45645105396341	3.71984743664673	0.730614095713093	0.185154804031795	0.482979743219862
Merged-chr16-16524538-3	chr16	16524444	16524644	+	724.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	2867.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	3.6159133967927	3.55071433149225	3.75121441783694	3.59192000660704	3.27869388737793	3.05821797969395	3.15609100442691	3.16460398669975	-1.68020805855112	0.00290926252115152	0.0312220893069331
Merged-chr5-64392669-4	chr5	64392590	64392790	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75252.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	5.28122203484695	5.21865207454735	4.94665850672652	4.52088186364624	4.80916117635976	4.97493052148189	4.73660375850816	4.94330294699681	-0.286371201830224	0.435460588593226	0.724637612462647
Merged-chr1-55238000-5	chr1	55237896	55238096	+	854.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175439, exon 1 of 1)	exon (NM_175439, exon 1 of 1)	819.0	NM_175439	212679.0	Mm.19223	NM_175439	ENSMUSG00000046994	Mars2	C730026E21Rik|MetRS	methionine-tRNA synthetase 2 (mitochondrial)	protein-coding	3.40909541781883	3.7115248692774	3.2374599012818	3.28111868968293	3.00930115223434	3.22035751511339	3.28500936312538	3.40763114128195	-0.685709710201406	0.227225802127252	0.535909590131417
Merged-chr2-166906412-4	chr2	166906307	166906507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023565, intron 1 of 24)	CpG	311.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	7.54032854894993	7.51433941195474	7.13689714952956	7.31967232522984	7.87619460911521	7.97322467723674	7.59204981016351	7.73769063031893	0.550234929324184	0.00353513233644818	0.0363413033760897
Merged-chr17-32100301-2	chr17	32100201	32100401	+	944.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8878.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	2.83354221048698	2.84182421082406	2.83388924008593	2.83819810338594	2.7859921586082	2.74177083436854	2.69903551559707	2.83248575702389	-0.332161004360977	0.590050693807052	0.820738632318576
Merged-chr4-102987085-4	chr4	102986978	102987178	+	904.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163767, intron 1 of 4)	intron (NM_001163767, intron 1 of 4)	699.0	NM_026100	67344.0	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	4.38829406768264	4.12673787078066	4.1595768506941	4.28347373698689	4.71763651473024	4.234128174445	4.32675241598429	4.54376022918557	0.554224174182826	0.157506007514965	0.444059226672193
Merged-chr11-59633218-3	chr11	59633132	59633332	+	921.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	20266.0	NM_001011740	257886.0	Mm.457883	NM_001011740	ENSMUSG00000044061	Olfr225	MOR256-51	olfactory receptor 225	protein-coding	3.5815628894092	3.55565236771803	3.4604112112926	3.48539761519047	3.94022310640598	3.75770252301979	3.96104291374274	3.97690570655485	1.18740747856932	0.00877170229762157	0.0718151596322068
Merged-chr2-153443951-4	chr2	153443854	153444054	+	869.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134300, intron 4 of 10)	CpG	525.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	3.72369048798767	3.77058507744969	3.92601634795801	3.76205841764011	3.94677955280234	3.72683599084258	3.90912501209419	3.92365490738846	0.257837376395312	0.557723877715852	0.802816324871987
Merged-chr15-42965446-3	chr15	42965369	42965569	+	756.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B1|LTR|ERVL	205349.0	NM_001357957	239405.0	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	3.09447806547254	3.12082613256274	3.03661004726793	3.73157573161527	2.58982362043472	2.64414417180008	2.76588092236734	2.8431610930823	-2.86499620725749	0.000216860107516906	0.00388813239117024
Merged-chr12-110854994-4	chr12	110854887	110855087	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028365, intron 1 of 7)	intron (NM_028365, intron 1 of 7)	4708.0	NM_028365	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	4.78277526995681	5.23420301733938	5.20270913364069	5.02181189789442	5.05639503836299	4.78917243008879	5.01992505134027	5.31261868126571	-0.0219246917233417	0.946677751366676	0.98095209334417
Merged-chr6-100191395-4	chr6	100191304	100191504	+	812.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	95954.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	3.52571400984615	3.35777051035587	3.80928170953907	4.0505837989396	3.93013507908539	3.76517242625682	3.98020399439929	4.03882389916014	0.57219271254618	0.266698595907778	0.578354792618583
Merged-chr11-116335446-4	chr11	116335339	116335539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008240)	promoter-TSS (NM_008240)	-85.0	NM_008240	15223.0	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	6.59646681318791	6.19725856178435	5.59118813350382	5.67996852675347	6.64651525694512	6.61924318346729	6.37788029692929	6.16687330997587	0.596293952280938	0.0497506144291409	0.230919419788475
Merged-chr6-4988784-1	chr6	4988684	4988884	+	592.333313	f0_balb.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	85464.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	3.00191130667864	2.89650281605696	3.31589949921139	2.95269448936704	2.60818002261385	2.77356798528557	2.9309656331609	3.00069908349774	-0.958136110285292	0.142212231607424	0.419656085302633
Merged-chr6-24531232-3	chr6	24531129	24531329	+	711.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080847, intron 1 of 9)	intron (NM_080847, intron 1 of 9)	3085.0	NM_080847	78910.0	Mm.160150	NM_080847	ENSMUSG00000029685	Asb15	4930400E23Rik|Asb-15	ankyrin repeat and SOCS box-containing 15	protein-coding	3.9004532348686	3.81956915421492	3.94603868785619	3.6247376175142	3.49398660166033	3.71012188312736	3.39395817190161	3.94352320660964	-0.521413869736996	0.295877882841857	0.607783089169159
Merged-chr8-105573578-2	chr8	105573478	105573678	+	789.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271806, intron 1 of 4)	(TC)n|Simple_repeat|Simple_repeat	-5277.0	NM_007427	11604.0	Mm.441696	NM_007427	ENSMUSG00000005705	Agrp	Agrt|Art	agouti related neuropeptide	protein-coding	3.2526185267019	3.38633354110146	3.31234469239745	3.18842725336385	3.39237779405532	3.42538855382889	3.51047816686967	3.25141061886569	0.418174189380013	0.417826684283006	0.711477848869167
Merged-chr15-50705452-4	chr15	50705351	50705551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	B3A|SINE|B2	183598.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	5.77347007098946	5.70478983698543	5.8862855697274	5.86255110718675	5.73229327467468	5.25919406940888	5.59731435432706	5.48289449235923	-0.448294838355037	0.0981993848750343	0.343543399981326
Merged-chr10-25119256-4	chr10	25119153	25119353	+	996.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80917.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	5.50363459766545	5.82454101909296	5.58633370203106	5.94349731530539	5.44939690702057	5.1770338176748	5.58410420073595	5.5007346127877	-0.51820927100309	0.0699323065832058	0.283004304313503
Merged-chr19-5964229-4	chr19	5964125	5964325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008893)	promoter-TSS (NM_008893)	-19.0	NM_008893	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	6.19724299070442	6.21436938886385	5.75678915867914	5.79605670481318	6.51015333085503	6.77229279591452	6.10647566530409	6.23254224619532	0.652936503365536	0.0148639722129663	0.104154624743722
Merged-chr12-99392141-4	chr12	99392052	99392252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 1 of 5)	CpG	57922.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	7.21787615501251	7.41208836321422	6.8282273654743	7.12094036174309	6.98319908510251	7.22215507160195	7.19372418820173	7.2566505629252	-0.000943415539311085	0.996355500524325	0.998602617451138
Merged-chr7-115020225-4	chr7	115020091	115020291	+	931.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	68917.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	4.39559362656833	4.51333013950196	4.60859826270293	4.55391009424356	4.76357826987561	4.57180616484211	4.76736777601289	4.48260569003317	0.296558138389736	0.400759364993342	0.698473331069077
Merged-chr16-36067604-1	chr16	36067504	36067704	+	596.0	f0_balb.idr	intron (NM_027342, intron 1 of 4)	B3A|SINE|B2	3911.0	NM_027342	70186.0	Mm.212991	NM_027342	ENSMUSG00000003955	Fam162a	2310056P07Rik|HGTD-P	family with sequence similarity 162, member A	protein-coding	3.53962170030732	3.51575528077604	3.75287037519694	3.48413805159821	3.78484098667377	3.82159563915305	3.73688496424137	3.59468795384327	0.526338054075614	0.260614706943017	0.572433938946399
Merged-chr11-68655742-4	chr11	68655660	68655860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36155.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	7.10686166402384	7.29212526217567	7.75501270870516	7.4957857080847	7.19671530035439	7.11579374444948	7.30601723456133	7.43531862639188	-0.22640709351291	0.279241908804111	0.591411563519633
Merged-chr9-44515379-6	chr9	44515265	44515465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007551, intron 1 of 1)	intron (NM_007551, intron 1 of 1)	11056.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	5.88764343705859	5.45745798203058	5.62299690572669	5.54300618443025	5.73085397519945	5.82499228441691	5.69715693686787	5.98874200748735	0.305763771870376	0.248898961979968	0.560095451132502
Merged-chr2-61734425-3	chr2	61734318	61734518	+	755.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021526, intron 3 of 11)	intron (NM_021526, intron 3 of 11)	22724.0	NM_021526	59029.0	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	3.37976316021209	3.71154663610142	3.38018249765645	3.26306056873711	3.67057445385433	3.82347728612309	3.63945314159639	3.25045653326258	0.558107755910032	0.292084024219265	0.604488811454544
Merged-chr4-54481889-3	chr4	54481790	54481990	+	712.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-466055.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	4.36326081610136	3.85934968137677	4.62036744420199	4.71031918399621	2.9500801678939	3.2242887011608	3.17478342813587	3.34059208759253	-5.83132450085428	8.36263581290367e-09	4.48902001905483e-07
Merged-chr1-84286400-3	chr1	84286301	84286501	+	821.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1756.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	4.81623138876035	4.25696114485114	4.41262886821558	4.12952542710205	4.32606506785894	3.94024029566605	4.08100411252817	4.04413441414322	-0.749572889367484	0.091868770489416	0.331485159626861
Merged-chr15-100080996-4	chr15	100080879	100081079	+	888.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 3 of 3)	RSINE1|SINE|B4	42315.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	4.27915812465224	4.0632755584301	4.36721627415448	4.16914949299567	4.22566671099491	4.49640245638459	4.26081528107596	4.62964329821625	0.4550183009835	0.24714568147181	0.558168726560377
Merged-chr14-118231167-2	chr14	118231067	118231267	+	828.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5065.0	NR_131969	105245869.0	Mm.460408	NR_131969	ENSMUSG00000090534	LOC105245869	-	uncharacterized LOC105245869	ncRNA	3.23053388963561	2.95752659278316	3.28188225834179	3.06246385538965	2.66685000192388	3.05074749730909	2.93101777503909	2.93952443609689	-1.03236472803732	0.100356417319103	0.34775665392904
Merged-chr5-121837079-4	chr5	121836972	121837172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008507)	promoter-TSS (NM_008507)	-213.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	8.5654687910718	8.74342700880702	8.51929712065278	7.94692983385886	8.63646984232645	8.7679503162533	8.48961269642875	8.45428036220377	0.15440962875125	0.449760844295241	0.734839862538956
Merged-chr13-20313628-4	chr13	20313590	20313790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 13 of 21)	intron (NM_080288, intron 13 of 21)	-159300.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.97394148994345	5.92957593108106	5.95349510893956	5.70750762717221	5.77685746277188	5.8919247091708	5.78664264024408	6.01262265598724	-0.0247003313745408	0.921429551244747	0.970886721487516
Merged-chr13-74090481-3	chr13	74090390	74090590	+	937.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28205.0	NM_028959	74470.0	Mm.73234	NM_028959	ENSMUSG00000021572	Cep72	2610029E11Rik|4933440J22Rik	centrosomal protein 72	protein-coding	3.86402321868578	3.94584478695492	4.11220488614421	4.43861892231523	3.9781825600953	3.98557084200082	3.84946904902635	4.19655481801946	-0.318658375238727	0.483263342703147	0.757710267975312
Merged-chr19-11989517-4	chr19	11989419	11989619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033174, intron 11 of 13)	intron (NM_001033174, intron 11 of 13)	23675.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	6.14547126895799	5.83714643234852	5.82809993378513	5.98211290571846	5.84374864898458	5.87804283599961	5.77431739784778	5.98251552338384	-0.135990633804189	0.580918915913757	0.816043625532665
Merged-chr11-89303525-2	chr11	89303426	89303626	+	711.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008711)	promoter-TSS (NM_008711)	-967.0	NM_008711	18121.0	Mm.135266	NM_008711	ENSMUSG00000048616	Nog	-	noggin	protein-coding	3.09749249982223	2.9379466165	3.26307602086487	2.80009493932832	3.16482881500189	3.01734175919734	3.0861807614516	3.09625912287832	0.288212363744347	0.623935956780085	0.839195335242146
Merged-chr10-20776840-4	chr10	20776717	20776917	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51739.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	3.97566544807489	3.92300961700609	4.27205351518211	4.1074818166834	4.75801072174456	3.85847540521206	4.69021802415656	4.22452221448147	0.877233075522112	0.0544832263694342	0.243642744848273
Merged-chr1-161494534-4	chr1	161494448	161494648	+	923.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183391)	promoter-TSS (NM_183391)	-109.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	4.61792766556369	4.64706268745285	4.83530506366627	5.10573868564135	4.25040619401722	4.38701652151135	4.5970751189585	4.35506648501023	-0.965046421236447	0.0110675515468726	0.0848075413451231
Merged-chr11-5099312-4	chr11	5099217	5099417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001283063)	promoter-TSS (NM_001283063)	44.0	NM_177370	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	6.80469976374955	7.29780530940381	7.27990509189922	6.87488204507214	7.1532950347047	7.61236841856019	7.19064781332694	7.24327608037936	0.312982385312895	0.155935040985243	0.441815949458189
Merged-chr6-149357293-4	chr6	149357185	149357385	+	983.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB3_1-LTR_MM|LTR|ERVK	47871.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	5.66034918329114	5.17363524294626	5.71433224529468	5.33282476151505	6.07781960998541	6.10395735969539	6.17120640486289	6.28381018921663	1.11555340891836	2.37530960414105e-05	0.000593235657239143
Merged-chr11-3190110-9	chr11	3190020	3190220	+	962.0184939999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 1 of 32)	RLTR33|LTR|ERVK	3343.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	4.09859391742918	3.98497210408198	4.43192158283982	3.7611302271313	4.44226307549308	4.86718506545397	4.18440639995125	4.99459977883705	1.34965129264145	0.00235081245817443	0.0264885990122523
Merged-chr11-67025066-4	chr11	67024988	67025188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291042)	promoter-TSS (NM_001291042)	-66.0	NM_001291042	338369.0	Mm.128138	NM_177392	ENSMUSG00000050270	Tmem220	-	transmembrane protein 220	protein-coding	8.01566603893463	7.83440544183139	7.62498682435086	7.83894709048472	7.99901257015487	7.85573888207274	8.35604001493328	7.87223059622084	0.261218974870013	0.168862204751364	0.461341589819388
Merged-chr9-64703060-4	chr9	64702915	64703115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 23 of 24)	intron (NM_001134399, intron 23 of 24)	34741.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	7.46284722773668	7.69111044614825	7.48265264232251	7.34751396458496	7.29775540420771	7.52388873107924	7.2147066578945	7.1178740993822	-0.270707387698156	0.158174293305897	0.445095395264695
Merged-chr15-84996076-4	chr15	84995992	84996192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8121.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	5.97400614274585	6.20400880497569	6.43224561805176	6.14601845447455	6.61386598225937	6.48530799267766	6.24034111310918	6.28674881619289	0.340780203475642	0.149824139527556	0.432226823954601
Merged-chr10-8238776-1	chr10	8238676	8238876	+	804.333313	f0_balb.idr	intron (NM_177387, intron 7 of 7)	intron (NM_177387, intron 7 of 7)	280049.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	3.62919328252306	3.5186860906087	3.32130827549134	3.52142157969519	3.072832811672	3.31137044240495	3.30892795137788	3.13283166727232	-1.10601932069318	0.0430642881485516	0.211150178747783
Merged-chr3-122943770-2	chr3	122943670	122943870	+	762.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133857, intron 14 of 15)	intron (NM_133857, intron 14 of 15)	19373.0	NM_024461	67704.0	Mm.24219	NM_024461	ENSMUSG00000054091	1810037I17Rik	5730414I01Rik|Aln	RIKEN cDNA 1810037I17 gene	protein-coding	3.5524462999174	3.87586766292881	3.80945321250069	3.17678577644126	3.43795270163248	3.93200670006348	3.59359596818834	3.36941735820046	-0.0913660893524027	0.869619084703376	0.951054729822361
Merged-chr9-70263459-2	chr9	70263359	70263559	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	56109.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	3.25560638029636	3.37454487148184	3.41970761329051	3.12728946704463	3.22133115741271	3.17875845005905	3.12372529142635	3.41769632080613	-0.190425659727929	0.727769422467729	0.891645002699459
Merged-chr7-24385047-4	chr7	24384947	24385147	+	888.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008433, exon 9 of 9)	3' UTR (NM_008433, exon 9 of 9)	-14581.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	3.60159530943975	3.52171287239609	3.65587234024488	3.64503211409444	3.83497817605901	3.54019853623905	3.83380060768711	3.65383170424749	0.364710581530317	0.436806042957603	0.725299585501184
Merged-chr2-129515840-3	chr2	129515811	129516011	+	839.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	20691.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	3.31587190888649	3.04722964533992	3.15433172965205	3.37868449913358	3.09595980751463	3.00713705418223	2.95984109599699	3.09386471497271	-0.779934162493255	0.179026672054422	0.475075103089203
Merged-chr1-171453142-4	chr1	171453074	171453274	+	848.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172647, intron 1 of 9)	intron (NM_172647, intron 1 of 9)	15613.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	4.48141305279634	4.32072493408445	3.909822972225	4.21287299862814	4.09397593999409	4.68878444653852	4.34096101599021	4.35815773497745	0.320257510591728	0.446793950646262	0.732452304591314
Merged-chr14-14013501-1	chr14	14013401	14013601	+	1000.0	f0_c57.idr	intron (NM_139227, intron 2 of 11)	CpG	1010.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	4.89866679129931	4.71790514494893	5.34345086412153	5.0662551202008	5.00592069931586	4.63988228637288	5.23415287054708	5.49021545275468	0.195734390934898	0.59075458384643	0.821227672667716
Merged-chr8-125286416-4	chr8	125286336	125286536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	206397.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	6.83015429624876	7.13008790469141	6.98657374601509	6.75901248029601	6.58694564999686	6.83135401777221	6.6043632326123	6.88038241407454	-0.285142578235664	0.178466256012024	0.474282728191057
Merged-chr11-20133138-4	chr11	20133040	20133240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20189.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	6.65757606113923	6.89571145639867	6.46234785550068	6.54023488452185	6.84026037183346	6.74086543680067	6.63978464659928	6.36599826423641	0.0250566000013393	0.912073355560659	0.967118042908353
Merged-chr3-138489544-4	chr3	138489468	138489668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175224)	promoter-TSS (NM_175224)	-186.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	8.23731413426578	8.29930600699291	8.21490895710144	8.12499697836198	8.51732015585012	8.49045166606055	8.5416225833226	8.18535171592244	0.287081780779152	0.0757985619942259	0.29746630403079
Merged-chr8-115160125-3	chr8	115159997	115160197	+	940.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	546797.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	3.81894309118453	3.70838297452491	3.77172980854475	3.76351723256235	3.67516515060202	3.34997186192845	3.54717011621017	3.81719991295479	-0.470215301625113	0.3323794645248	0.643434879668289
Merged-chr8-128594306-4	chr8	128594211	128594411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-91343.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	5.46565642100189	5.49980074352309	5.62866165002583	5.87575907258731	5.19540288999899	5.42568496079124	5.78685177204416	5.51908180021748	-0.259573929871639	0.383918626446992	0.685555904565125
Merged-chr9-41158283-4	chr9	41158158	41158358	+	974.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176860)	promoter-TSS (NM_176860)	-196.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	5.15313814427474	4.72895032592775	5.05421505320456	5.31715384617261	5.24488556849797	5.44756376605801	5.16003252084868	5.01576437162425	0.242406850890945	0.459981707490458	0.742300655594817
Merged-chr4-132816183-3	chr4	132816081	132816281	+	566.5	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-19817.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	3.76865942063633	3.83230064032962	3.66277208064163	3.45284647000957	3.77098090300286	3.88929957963044	3.7020706425506	3.91150847234859	0.433618252080343	0.352064091750301	0.659279248707432
Merged-chr6-85961856-7	chr6	85961743	85961943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028099)	promoter-TSS (NM_028099)	-176.0	NM_028099	72102.0	Mm.24007	NM_028099	ENSMUSG00000030002	Dusp11	2010300F21Rik|AI481497	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	protein-coding	6.31476089466167	6.72873327810624	6.67920899069869	6.20620581771479	6.36152522132062	6.54869495484029	6.30245619169124	6.68868845809164	-0.0165387275142676	0.946017239264516	0.980724746192965
Merged-chr1-74368828-2	chr1	74368728	74368928	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033345, exon 10 of 10)	exon (NM_001033345, exon 10 of 10)	-6375.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	5.84361779804305	6.27668079520078	6.10264638132923	5.83393070037668	6.50819412716804	6.34099802580908	6.24838425536237	6.57031284824382	0.619425889743264	0.0106136874544758	0.0824135403085091
Merged-chr7-126729050-2	chr7	126728950	126729150	+	982.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	-24234.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	3.54520615783474	3.77376506737818	3.60228654738802	3.46374623013696	3.74099161522349	3.92712685621231	3.64182948036639	3.60032685245129	0.426442925053626	0.369154762517431	0.673491314105063
Merged-chr3-116601145-3	chr3	116601047	116601247	+	664.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030016, intron 1 of 11)	intron (NM_030016, intron 1 of 11)	6189.0	NM_001289571	72776.0	Mm.440836	NM_028349	ENSMUSG00000027959	Sass6	2810453L12Rik	SAS-6 centriolar assembly protein	protein-coding	3.63219982883557	3.84253781125294	3.46969315894756	3.53957060766126	3.35179820829825	3.52518442944523	3.39836008304479	3.68056058481812	-0.446614725280661	0.377614832148344	0.680324140363648
Merged-chr13-55892488-4	chr13	55892382	55892582	+	990.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61057.0	NM_011097	18740.0	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	5.89834349033642	6.04007442163874	6.12214908636687	6.08325091177643	5.68857547025878	5.19567846954761	5.65347131948463	5.70422729917232	-0.743724289827592	0.00529956116192106	0.0496786096957443
Merged-chr14-17714595-4	chr14	17714443	17714643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	53583.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	4.85273999310224	5.10851077991007	5.1179994446766	5.20498252446199	4.96473356195891	4.44671668837645	4.63403478578632	4.77468043557363	-0.707806769922814	0.0421878357987508	0.208302439256332
Merged-chr11-70813179-4	chr11	70813067	70813267	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045526)	promoter-TSS (NM_001045526)	-606.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	4.29718712424553	4.32582649600153	4.21111411847008	4.24554975232295	4.23250281948648	3.84810085225436	4.19261714742425	4.2525732943977	-0.305523799691378	0.451674411095835	0.736214085676119
Merged-chr4-36014277-4	chr4	36014168	36014368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 7 of 8)	intron (NM_001166000, intron 7 of 8)	-169064.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	7.38210815275434	7.00367369723492	7.45895679035708	7.96035806729758	7.07858672150605	6.7416710238065	7.37539173837601	7.13156529480802	-0.547173931154918	0.0317700222439823	0.173897140364843
Merged-chr7-114414671-2	chr7	114414571	114414771	+	899.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011055)	promoter-TSS (NM_011055)	490.0	NR_029437	71045.0	Mm.235682	NR_029437	ENSMUSG00000087475	4933406I18Rik	4933403D24Rik	RIKEN cDNA 4933406I18 gene	ncRNA	2.57966957920751	2.48987171112407	2.81123944074277	2.26922439176128	2.35332814526197	2.40352611918428	2.29360934199822	2.69925747493293	-0.553532300304365	0.467671003179605	0.747089777913468
Merged-chr11-63078195-4	chr11	63078091	63078291	+	934.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027660, intron 4 of 7)	intron (NM_027660, intron 4 of 7)	16532.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	4.34363694747177	4.24358485087604	4.94891665972034	4.69840962291111	3.91622644274282	4.04537158113807	4.6067014558246	4.5510013045166	-0.638097192290766	0.159718405463952	0.447441608254041
Merged-chr4-86885120-1	chr4	86885020	86885220	+	569.0	f0_c57.idr	intron (NM_001290543, intron 1 of 5)	B3|SINE|B2	10706.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	3.33176440973791	3.48202653266496	3.67557117143437	3.03807002877156	3.55615706413685	3.44919433320054	3.92739569288063	3.86006619899591	1.02738550630802	0.0591944005793724	0.256351803287853
Merged-chr7-25789505-4	chr7	25789391	25789591	+	845.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190974)	promoter-TSS (NM_001190974)	-758.0	NM_001190975	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	3.91178477372696	4.06488966355953	3.64113294022596	3.70699105146298	3.88156106322076	3.81945808031479	3.84639455053868	4.21283608355086	0.313428024694758	0.493806867919602	0.764500588386318
Merged-chr15-90403802-4	chr15	90403677	90403877	+	916.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50067.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	4.647887770916	4.77060798556835	4.56542530127519	5.13439903539278	4.63491643560586	4.69784606524631	4.50161915716688	4.8323824700328	-0.319071018208218	0.387859813616523	0.688726934413767
Merged-chr13-100744626-4	chr13	100744537	100744737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190264)	promoter-TSS (NM_001190264)	22.0	NM_001190264	66128.0	Mm.306173	NM_025369	ENSMUSG00000061474	Mrps36	1110018B13Rik|S36mt	mitochondrial ribosomal protein S36	protein-coding	6.76094335110931	6.91900767184397	6.4966799492425	6.71846869848565	6.59471139056597	6.50745665725203	6.87305566315212	6.66979228686972	-0.0963498156183913	0.654586159184812	0.855659697629251
Merged-chr13-113596165-4	chr13	113596058	113596258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	22406.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	6.05334279597566	5.67790783501659	6.6929390061523	7.08777913139737	6.17283839149597	5.81760246963196	6.38907643527854	6.23746675453629	-0.496637957353582	0.150652207296895	0.433473743357818
Merged-chr3-141862968-4	chr3	141862857	141863057	+	810.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355043, intron 6 of 10)	intron (NM_001355043, intron 6 of 10)	68463.0	NM_001355043	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	3.1872241016092	3.32704184010196	3.18755862700275	3.20365642705966	3.82590951793348	3.73768947730993	3.79389337851732	3.97741154909203	1.98514138827593	6.80777702063404e-05	0.0014675068460076
Merged-chr3-157947087-4	chr3	157947014	157947214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001359909, exon 1 of 12)	5' UTR (NM_001359909, exon 1 of 12)	114.0	NM_001013806	433667.0	Mm.265806	NM_001013806	ENSMUSG00000039988	Ankrd13c	AI505652|AU022220	ankyrin repeat domain 13c	protein-coding	7.53914562867499	7.49226931099368	7.93283592161078	7.15164086741062	7.15876570860186	7.38478341333481	7.31253769060216	7.55283981075841	-0.257145673545739	0.249342398834023	0.560328612484111
Merged-chr10-80747589-4	chr10	80747493	80747693	+	954.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5318.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	5.00696872671716	4.94651131624837	4.29287793609065	4.2838064232611	4.56018884452754	4.37132992955303	4.65916453764252	4.47721966428658	-0.321812673349859	0.43797794312849	0.726158062691883
Merged-chr8-117282758-4	chr8	117282667	117282867	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	25748.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	5.37520320525877	5.52286756545332	4.58856906671448	4.9793951651051	4.92919732076325	5.31577595025862	5.20872619172689	5.00274310593792	-0.0835832085960848	0.818095263184456	0.930196046999351
Merged-chr10-121461621-4	chr10	121461475	121461675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	14675.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	6.93734120788004	6.81051282982949	7.43566880006098	7.15927202453111	6.40243640708189	6.33181675045721	6.3695449260345	6.52467246879544	-0.994272917040141	1.19213075327577e-05	0.00032264134938181
Merged-chr10-44448258-4	chr10	44448164	44448364	+	926.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007548, intron 3 of 6)	intron (NM_007548, intron 3 of 6)	10484.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.60188018379343	4.25414964811663	4.60261994851287	4.75404279048824	4.75824319539257	4.519716335309	4.37088040705562	4.71185122844916	0.0649304062421188	0.863696016040842	0.948777991323093
Merged-chr10-51595328-4	chr10	51595236	51595436	+	958.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4876.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	5.25158211606236	4.72461740940912	5.13850510326108	5.28864804363625	4.88152906933907	4.72089241633729	4.61063997495491	4.79471234413366	-0.726224167115367	0.0354001728679988	0.186744897692973
Merged-chr3-81041151-4	chr3	81041045	81041245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	Tigger15a|DNA|TcMar-Tigger	4729.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	5.87735453136261	6.37237401247668	6.39722396729383	6.33624025638902	5.70012129595636	5.60989867476882	5.69805277633038	5.82575961803087	-0.88373436447155	0.00056497848213433	0.00851282882723105
Merged-chr11-6465319-3	chr11	6465205	6465405	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10771.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	3.84305433468258	3.62861335284387	3.63299103831193	2.82489303077025	5.42440643293283	5.24695889098377	4.57035246070716	4.86789159741661	4.1679169995727	1.23594294724e-14	1.89597377244819e-12
Merged-chr19-56723473-4	chr19	56723341	56723541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007419, exon 1 of 1)	exon (NM_007419, exon 1 of 1)	1069.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	5.14892733765214	5.081468284967	5.46068683152399	4.95450137588566	4.91847778206734	5.15478733267964	4.95464237208974	5.37948110423047	-0.0997167142971426	0.76100400235995	0.906447737273317
Merged-chr2-148533907-4	chr2	148533805	148534005	+	680.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90370.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	3.48689122741035	3.87251196246168	3.96172395080403	3.47437172872993	3.98547711479393	3.83932850370203	3.85343543414676	3.54749972282269	0.328357230736426	0.507599205644725	0.772892460662415
Merged-chr6-108773111-4	chr6	108773086	108773286	+	759.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9873.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	3.49080289889231	3.64281862634739	3.49125280259702	3.32837553324684	3.83156461139031	3.60701391917556	3.68838448870596	3.60009152525581	0.664335023442191	0.168979760478794	0.461525281881741
Merged-chr5-117357691-4	chr5	117357594	117357794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021539, intron 1 of 8)	CpG	389.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	5.16007745362071	5.22570139921343	5.88710487209594	5.43943111744149	5.69861595811581	5.5981470982735	5.36558229815866	5.75397740908336	0.270733382770123	0.377655126329499	0.680362294027017
Merged-chr9-103490562-2	chr9	103490462	103490662	+	861.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359465, intron 3 of 4)	intron (NM_001359465, intron 3 of 4)	-10234.0	NM_001002896	107993.0	Mm.335403	NM_001002896	ENSMUSG00000032556	Bfsp2	AI448593|CP49	beaded filament structural protein 2, phakinin	protein-coding	2.70383522022846	2.89310204886254	2.70417302030554	2.60556008608172	2.75911032210199	2.4582901332264	2.5006464858275	2.50640612017884	-0.813462499789143	0.249188670262073	0.560328612484111
Merged-chr12-111038460-4	chr12	111038395	111038595	+	848.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1303.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	4.10149979224271	3.80359722011588	4.05550673046667	3.76761656367672	4.06567697836256	4.08100806140686	3.83494933008716	4.52262562995308	0.579877184073987	0.198190400775489	0.499698719025133
Merged-chr6-38650728-4	chr6	38650618	38650818	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12351.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	3.95544136763077	3.84848690560272	3.79386974334826	3.98742216421146	4.25696139326143	4.02673563517046	4.4983826928407	3.84802972027595	0.732060180770526	0.0984967068247808	0.343994301133918
Merged-chr2-71211737-4	chr2	71211669	71211869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198878)	promoter-TSS (NM_001198878)	63.0	NM_001198876	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	6.65695953970661	6.60391906882987	7.04591666047849	6.76820685251944	6.38309776259854	6.56640134319678	6.59361458512818	6.50905955691309	-0.385744967457233	0.0750933863098949	0.295711553452515
Merged-chr16-30308846-3	chr16	30308721	30308921	+	786.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008148, exon 2 of 2)	exon (NM_008148, exon 2 of 2)	1960.0	NM_008148	14729.0	Mm.3519	NM_008148	ENSMUSG00000047953	Gp5	GPV	glycoprotein 5 (platelet)	protein-coding	3.39371791040132	3.21648925529001	3.08960460956982	2.87995047000891	3.44818617561571	3.39561112646942	3.62354654110852	3.33678428916167	1.13300371060173	0.0417925015262102	0.207095870762919
Merged-chr13-13589591-4	chr13	13589494	13589694	+	929.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010748)	promoter-TSS (NM_010748)	-815.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	4.06263377156364	4.13002488640244	4.15466053843778	3.58588861048019	4.41435713344485	3.86444951666826	4.2603039271678	3.85634729828346	0.358497952112553	0.452637356255029	0.736937759721328
Merged-chr11-63129659-4	chr11	63129549	63129749	+	972.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302261, intron 1 of 3)	intron (NM_001302261, intron 1 of 3)	667.0	NM_001302261	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	4.99445158562602	4.92680416831097	5.25241723875322	5.30461165822279	4.84469081225481	4.81000396450372	5.38823071121871	5.21936587306709	-0.101980729970018	0.762786501952599	0.907011913026374
Merged-chr1-125432630-4	chr1	125432528	125432728	+	828.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205386, intron 2 of 12)	intron (NM_001205386, intron 2 of 12)	3099.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	3.73562263896912	4.01384205695502	3.44676021870235	3.19131606139608	3.81764183941363	4.00685408667129	3.55644152083113	3.83382255528309	0.536655709746246	0.31912449829784	0.630988712584849
Merged-chr6-125147010-4	chr6	125146913	125147113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039669, intron 1 of 9)	intron (NM_001039669, intron 1 of 9)	1789.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	8.14004421200737	8.29663160323977	7.79187158937037	8.17251272930897	8.0146196972065	7.95330170932599	8.19079624030325	7.85711742891299	-0.137612146632253	0.447939482465913	0.73332468018769
Merged-chr4-126262213-4	chr4	126262113	126262313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013718)	promoter-TSS (NM_013718)	-192.0	NM_013718	27096.0	Mm.8392	NM_013718	ENSMUSG00000028847	Trappc3	1110058K12Rik|AI835942|AU019197|Bet3	trafficking protein particle complex 3	protein-coding	8.24866600684356	8.56927067259231	8.226619804713	7.88450674294186	8.2332188312536	8.62570163468356	8.30574048257524	8.0841388841231	0.0955188057681786	0.642350256836463	0.849120718759996
Merged-chr15-86182077-4	chr15	86182036	86182236	+	928.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-3592.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	4.33909518636667	4.03634442358347	4.68093854650573	4.59303416750649	4.19160805518345	4.37710840562215	4.18410553732666	4.29282023758988	-0.433334686780793	0.291312812065022	0.60362118884242
Merged-chr14-45050325-4	chr14	45050243	45050443	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62232.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	5.53131096233568	5.36744598343636	5.58300782336134	5.4462232145891	5.45868261135069	5.05064484631979	5.39709936186978	5.30232123264858	-0.279899704392337	0.329501495531853	0.640831837145777
Merged-chr16-14135240-4	chr16	14135122	14135322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081154, intron 13 of 26)	ORR1B2|LTR|ERVL-MaLR	24052.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	5.99563970791159	5.60331547454927	6.49954478038542	6.52145847805225	5.82128153051602	5.76411212004799	6.03019686918372	6.13817193250625	-0.424003065838136	0.159269634791935	0.446694248585648
Merged-chr13-74807186-3	chr13	74807079	74807279	+	929.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301153, intron 1 of 31)	intron (NM_001301153, intron 1 of 31)	781.0	NM_009817	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	3.8219527933804	4.08210220809305	4.42617311908647	4.8163542665748	3.3755193674347	3.68800623228926	3.97131646349826	4.45958209825951	-1.01231067211184	0.0806528960632353	0.308052860791866
Merged-chr12-76373162-3	chr12	76372976	76373176	+	915.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178744, intron 1 of 1)	PB1D10|SINE|Alu	2810.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	3.0967208722256	2.98236559942531	3.20626950787128	2.6098570739343	2.98661620541627	3.08905481357158	2.96714184108112	2.91265344719775	0.019840969455359	0.975148851221039	0.991162519542794
Merged-chr9-41088139-4	chr9	41088056	41088256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	L2b|LINE|L2	-8650.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	6.90347148899968	7.15181030594288	7.11415318489617	7.25586780052238	7.48752890537368	7.58981980732427	7.3763621540813	7.28856100427745	0.428013716366918	0.0242553983903847	0.145520869234743
Merged-chr10-127674946-4	chr10	127674782	127674982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2183.0	NM_173732	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	5.62481033744223	6.14236304235757	6.05109836537495	6.35518102459212	5.91095331821268	6.24753022493105	5.97714149755574	6.29649903258575	0.0373743915865577	0.891399854468724	0.959385213525176
Merged-chr1-9548826-4	chr1	9548724	9548924	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357377, intron 2 of 14)	intron (NM_001357377, intron 2 of 14)	876.0	NM_001357376	76187.0	Mm.28514	NM_175236	ENSMUSG00000025911	Adhfe1	6330565B14Rik|AI043035|Adh8|HOT	alcohol dehydrogenase, iron containing, 1	protein-coding	4.4447199951404	4.71456553030957	4.7543165579949	4.41100793481526	4.76386821328045	4.85423454008064	4.02431595244866	4.1508898022417	-0.180109218341747	0.67874845599736	0.868137421912153
Merged-chr1-180944798-4	chr1	180944719	180944919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 1 of 22)	intron (NM_144794, intron 1 of 22)	2301.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	6.17781160304317	6.33617823101386	5.89685373504095	5.90601224766988	5.38404739534682	5.90471050853405	5.67292366376916	5.49899100369857	-0.762213690763662	0.00609651983504803	0.0549296437137827
Merged-chr4-126412735-4	chr4	126412636	126412836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153402, intron 2 of 18)	RMER19B|LTR|ERVK	16806.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	5.79846883208931	6.07079429762726	6.50635928624391	5.97677578953428	5.53131050642081	5.67871492119269	5.55991113099926	5.58412854910244	-0.848776509008537	0.00221003007376836	0.0252548578007005
Merged-chr14-25379107-4	chr14	25379009	25379209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80076.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	6.21333675997568	6.89397984687553	6.64291468488323	5.85468738131378	6.28966685483408	6.13276629219022	6.12246252622402	5.79635248371406	-0.533639475666211	0.0800897269708317	0.306561257936233
Merged-chr7-102100285-4	chr7	102100164	102100364	+	879.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291354)	promoter-TSS (NM_001291354)	-35.0	NM_007491	11875.0	Mm.2816	NM_007491	ENSMUSG00000070424	Art5	ARTC5|Yac-2	ADP-ribosyltransferase 5	protein-coding	4.01375643169724	4.05696118144866	3.80323087605919	3.84454947557438	4.28301667070378	3.86507574246512	4.17661437416812	4.27473938637324	0.627190912819537	0.139684509885218	0.41561685813982
Merged-chr2-57335601-3	chr2	57335517	57335717	+	765.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010274, intron 6 of 16)	intron (NM_010274, intron 6 of 16)	97235.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	3.64329803618059	3.35885695869199	3.96045646964426	3.45754467972457	3.60284532242525	3.40623562607584	3.77241623734577	3.35574727957799	-0.224392375366525	0.673363328853831	0.865717176504662
Merged-chr18-4351422-3	chr18	4351310	4351510	+	936.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 1 of 7)	intron (NM_007746, intron 1 of 7)	1543.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	4.47786938669365	4.07465212276128	5.09139446708191	4.90277675816196	4.40803498585125	4.20107600732913	4.54199138974298	4.88389016854773	-0.355413044973378	0.430340398918168	0.720954627405943
Merged-chr7-28765361-4	chr7	28765276	28765476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306222, intron 1 of 5)	L2a|LINE|L2	1268.0	NM_001306222	18036.0	Mm.220333	NM_010908	ENSMUSG00000030595	Nfkbib	I(Kappa)B(beta)|I-kappa-B-beta|IKB-beta|IKappaBbeta|IkB|IkBb|NF-kappa-BIB|ikB-B	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta	protein-coding	7.4419601265756	7.78137203081199	7.12998827937389	6.9687251318285	7.65788468825242	7.8705507864268	7.31748302053158	7.19647322055167	0.232069657729353	0.353286367035127	0.660153583933458
Merged-chr4-58040267-4	chr4	58040154	58040354	+	954.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31130.0	NM_026132	67402.0	Mm.87357	NM_026132	ENSMUSG00000038709	Txndc8	4930429J24Rik|Sptrx-3|Sptrx3|Trx6	thioredoxin domain containing 8	protein-coding	5.07875595232472	5.26468343642753	5.24541343933398	5.53206810240712	5.33931281362925	5.50805221628404	4.86666492593184	5.27248586226808	-0.071688662734332	0.823262233752908	0.932247237471869
Merged-chr14-45291842-4	chr14	45291721	45291921	+	975.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015774, intron 13 of 15)	intron (NM_015774, intron 13 of 15)	26751.0	NM_015774	50527.0	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	5.04560407858102	5.40594196510354	5.24288988144026	5.24765691787784	5.1809929438295	4.95238786244704	5.30415747230479	5.17716817014336	-0.152598556172141	0.612735577547974	0.832832725096038
Merged-chr3-105055135-4	chr3	105055027	105055227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1981.0	NM_030249	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	5.49053242691619	5.15356495540915	6.0431811134337	5.85754786030812	5.46257292923457	5.45135825390871	5.67449136985046	5.72360750596367	-0.174947464465645	0.577948095381947	0.814391164493464
Merged-chr2-22752707-4	chr2	22752603	22752803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21624.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	6.02592595659212	6.41410968268407	6.17888817072079	6.28089955908483	6.1689970622369	6.50818172954178	6.51489765617316	6.3985607309057	0.234371490584256	0.315303617500257	0.627105605858262
Merged-chr12-85523928-4	chr12	85523825	85524025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50035.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	7.95381623690854	8.33283389465916	7.77671101510934	7.74153034543612	7.9413046780983	8.11873953187032	7.86036519510631	7.63661360397262	-0.0916502346615636	0.655236075907587	0.855982245843449
Merged-chr9-108567465-4	chr9	108567356	108567556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023247)	promoter-TSS (NM_023247)	-114.0	NM_023247	66706.0	Mm.29471	NM_023247	ENSMUSG00000070283	Ndufaf3	4733401H18Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	protein-coding	7.86120371278759	8.33197577120933	7.65483788658787	7.18665916104616	8.0823156716711	8.29860749934006	7.70110515648453	7.52170276658621	0.149746177767693	0.580954937790265	0.816047207441467
Merged-chr17-53479174-4	chr17	53479108	53479308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025887)	promoter-TSS (NM_025887)	-26.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	8.97877743490517	9.03109349234479	9.16829816291273	9.09768751471482	9.18774431747597	9.1212353528984	9.09655091903181	8.91897131764571	0.0189594392155378	0.895650382482842	0.960926545377703
Merged-chr3-89393788-4	chr3	89393695	89393895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040404)	promoter-TSS (NR_040404)	-417.0	NM_009565	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	8.19482989330862	8.17291822869878	8.05014987279464	8.09033599512944	8.2517279164297	8.29341643218626	8.57084373527012	8.09751825778497	0.238521726144593	0.158846441171103	0.446064231358103
Merged-chr6-84019304-4	chr6	84019226	84019426	+	869.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021469)	promoter-TSS (NM_021469)	-60.0	NM_001310152	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	4.28642270946147	4.50484625524095	4.71769787274535	4.34499161270636	4.22481775890832	4.21201300103647	4.480148099638	4.41694143760842	-0.307778662345385	0.428394289289551	0.719438399333262
Merged-chr5-105623034-4	chr5	105622978	105623178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76891.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	7.09334886299642	6.87753699249679	6.80410807924195	7.00000377017528	6.88100008437865	6.7312385868681	6.82493292108393	6.78499444536802	-0.196772789324737	0.31517732068284	0.627038475150038
Merged-chr10-127312438-4	chr10	127312315	127312515	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171582)	promoter-TSS (NM_001171582)	-629.0	NM_001171582	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	4.8024448354157	4.96595599398923	4.76583373393646	4.55893013992385	4.88729982360483	4.8622852670979	4.54015225946333	4.97185194143677	0.119293224455431	0.731623617490793	0.893711507171347
Merged-chr3-84313237-4	chr3	84313121	84313321	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	-8446.0	NM_001271726	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	4.62602103403289	4.85653607039	4.66895610114224	4.79325950925954	4.93939580530573	4.76067835030118	5.17723840162306	4.85823709134906	0.402453355529562	0.226370536714821	0.534972224603216
Merged-chr16-91363572-3	chr16	91363520	91363720	+	675.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9163.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	3.78870152423891	3.71094065057636	3.78929630424732	3.38488207347579	3.3883319892794	3.91105472097105	3.34113876975927	3.21574601925248	-0.59148038075685	0.285618233845318	0.597361980045129
Merged-chr19-6074103-4	chr19	6073992	6074192	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081041, intron 2 of 9)	intron (NM_001081041, intron 2 of 9)	3095.0	NM_001081041	68505.0	Mm.227361	NM_001081041	ENSMUSG00000024799	Vps51	1110014N23Rik|3110057M17Rik|AI837850|Ffr	VPS51 GARP complex subunit	protein-coding	5.29563119975715	4.62447872337163	4.90943809198521	4.65471147676325	4.84972742837829	4.81601840197569	4.91980674537619	4.79699921284323	-0.07591406008316	0.831472853505543	0.935425030262389
Merged-chr19-34248783-4	chr19	34248680	34248880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007392, intron 3 of 8)	intron (NM_007392, intron 3 of 8)	6593.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	6.02145134531088	6.14930832559691	6.09114668865367	6.31796572528575	6.5833452391977	6.9000912733483	6.20626043558126	6.66595279984306	0.661494625467696	0.00711555016139239	0.0616527991403225
Merged-chr7-4228509-4	chr7	4228380	4228580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-9274.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	5.37169305616747	5.20718748664129	5.10429580815342	5.48650970055706	5.91745491647649	5.66248761536216	5.43299452172147	5.59037768403019	0.614432719383549	0.0364032128307835	0.189757911833199
Merged-chr1-71103086-4	chr1	71102988	71103188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007525)	promoter-TSS (NM_007525)	-116.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	9.02975931568944	9.0712539293106	8.9222170030757	9.08148778061515	9.09216474487121	9.15223149026398	9.43094025958421	8.7286478644118	0.119268956464976	0.502003587781826	0.769457185302407
Merged-chr15-37135799-3	chr15	37135703	37135903	+	875.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-97233.0	NM_026496	252973.0	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3|clft3	grainyhead like transcription factor 2	protein-coding	3.48523872342859	3.43847704781384	3.5845732023429	3.45967982415146	3.03217097611256	3.43535031319134	3.12371407997538	3.2600565761471	-1.02756448507546	0.0615383342540399	0.262519236256882
Merged-chr11-26601977-4	chr11	26601856	26602056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34A|LTR|ERV1	-8036.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	6.95461064749094	7.00126132035075	7.42533182468316	7.28484620689904	7.10971744255608	7.05126528303206	7.02200129545739	7.04031701474245	-0.174565820966464	0.38375157894539	0.685515575911105
Merged-chr19-29486737-4	chr19	29486628	29486828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35259.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	8.48891090322803	8.61351757117724	8.7633750488335	8.52685733850108	8.47093173561051	8.59195151526576	8.20753083147056	8.10164659496135	-0.304572492300906	0.0825540851698137	0.311990471598668
Merged-chr8-24431497-4	chr8	24431411	24431611	+	717.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7435.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	3.95166720047744	4.28940564616258	3.95224816955906	3.73918913438617	4.10464640255306	3.97194034431292	3.93544389371552	3.61848219325982	-0.182909263977493	0.697439825239955	0.877830480279296
Merged-chr4-99120983-4	chr4	99120901	99121101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290636)	promoter-TSS (NM_001290636)	-86.0	NM_026082	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	7.05651129859636	6.99707108285876	7.00880802851208	7.29323446345061	6.95654329596941	6.84497761707925	7.08055607683013	6.97867788783532	-0.191275716412168	0.329756400491963	0.641093926325179
Merged-chr1-64299079-4	chr1	64298958	64299158	+	912.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177669.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	3.93704657854829	4.15562531377526	4.60197977359263	4.6690845077321	4.25766665065711	4.16803178405679	4.17887854060727	4.63241080972392	-0.153922218642828	0.73193266625492	0.893842682027583
Merged-chr17-28218255-2	chr17	28218155	28218355	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027185, intron 3 of 10)	intron (NM_027185, intron 3 of 10)	10477.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	3.63707843800258	3.15595527314818	3.49073063535611	3.07885746191366	3.25104866804847	3.4398362876611	3.36906583912651	3.43574644238562	0.0828482946852319	0.881474684131275	0.955384724180766
Merged-chr14-14606208-4	chr14	14606100	14606300	+	908.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96825.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	4.7806037188554	4.31973121082621	4.67152559927073	5.27881758644943	4.45774404308648	4.50218682436621	4.35234990514889	4.62964385958765	-0.736980638093266	0.0742337868612389	0.293532954557865
Merged-chr3-88082000-4	chr3	88081923	88082123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033484)	promoter-TSS (NM_001033484)	-28.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	6.01600951347585	6.06496382111717	5.70516916689629	5.94080911421724	6.02522010654334	6.05831767557793	5.98635866719215	6.09502739975038	0.156255103387383	0.514212526639799	0.776929174988202
Merged-chr15-12306750-3	chr15	12306652	12306852	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14744.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	5.04596841874153	4.84605931920405	5.44480127642421	5.76514200995478	4.39663386074348	4.55089694246578	5.0864106425596	4.78558812708757	-1.18865646127893	0.00282504420169338	0.0304949683397533
Merged-chr1-118567844-4	chr1	118567736	118567936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 33 of 39)	intron (NM_001359330, intron 33 of 39)	-60109.0	NM_023755	81879.0	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	5.2191112958945	5.37771655397874	5.21999332095781	6.03159664559848	5.2723710524985	5.25812387719375	5.43575973827444	5.51347447065671	-0.287980082955363	0.395871049123788	0.694870790007204
Merged-chr10-82793802-3	chr10	82793703	82793903	+	931.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16B|LTR|ERVL	-18320.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	3.60863643189376	3.32684443555139	3.87572125045653	3.73955477935829	3.34770481075552	3.44877113150023	3.12779047415922	3.13564599891713	-1.32612393445201	0.0187955781511723	0.12275820153453
Merged-chr17-45506991-4	chr17	45506881	45507081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198608, exon 1 of 22)	exon (NM_198608, exon 1 of 22)	140.0	NM_198608	224805.0	Mm.329063	NM_198608	ENSMUSG00000023938	Aars2	Aarsl|AlaRS|Gm89	alanyl-tRNA synthetase 2, mitochondrial	protein-coding	6.06288373596765	6.60202877028965	6.55331912299375	6.36544234335447	6.29146432667905	6.54490021434602	6.37169860082536	6.53295589487704	0.0306741008678129	0.895549307455943	0.960919827429015
Merged-chr4-46585177-3	chr4	46585118	46585318	+	815.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	16711.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	3.28014637911259	2.96063903519577	3.12860804382637	3.15521867577945	2.66797045653941	2.86332941166452	2.67626376251143	2.89109463620291	-1.69716548394695	0.00972604929512796	0.0773791990146374
Merged-chr2-164936134-4	chr2	164935999	164936199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-12120.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	6.64306000935784	6.38678614497659	6.92784499923667	6.7109658250729	6.58912493213574	6.49486368742003	6.49995759285581	6.52866512123084	-0.214419813588022	0.328365491708101	0.639840327802319
Merged-chr15-35030518-3	chr15	35030418	35030618	+	961.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357821, intron 7 of 11)	intron (NM_001357821, intron 7 of 11)	125288.0	NM_001357821	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	5.01712464746556	4.62806340208675	5.28119305258837	5.31922624558632	4.2284854626369	4.53962786444726	5.22770193873795	4.72383011476796	-0.726102103958587	0.0813751487410743	0.309492891547751
Merged-chr11-46461592-4	chr11	46461476	46461676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134250, intron 3 of 6)	ID_B1|SINE|B4	6645.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	6.6063832169103	6.46682329029663	6.57747251954591	6.6057831972286	6.15644397111907	6.21244754741719	6.46568829219863	6.07534859565104	-0.496226508970163	0.0252252559102862	0.149376746292701
Merged-chr15-53255956-4	chr15	53255850	53256050	+	742.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	90233.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	3.65174786889394	3.85643758075589	3.80658452110434	3.72705062461935	3.73400846993264	3.59183070115056	3.837448049473	3.65027277350405	-0.158844037464919	0.729826325005768	0.892804127302382
Merged-chr16-91061764-4	chr16	91061670	91061870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028905, intron 1 of 2)	intron (NM_028905, intron 1 of 2)	7375.0	NM_001163695	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	7.27735550896498	7.26497545109359	7.22437599551936	7.54000876446047	7.24040027674533	7.1715646439749	7.24229382397151	7.38511299716593	-0.112606119245838	0.548620916216281	0.79752982944755
Merged-chr17-28762086-4	chr17	28761981	28762181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7236.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	5.56487344262691	5.35256013755505	5.25104429506465	5.25824402261329	5.24003863324204	5.57735162765329	5.63405811741333	5.4000323407022	0.1926088964949	0.505682360060682	0.771556252339237
Merged-chr3-123329408-4	chr3	123329311	123329511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027135, intron 9 of 22)	intron (NM_027135, intron 9 of 22)	56579.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	5.89656437031594	5.56718847333486	6.01989385483918	5.79230465975796	6.75371904003849	6.78335293070495	6.60240899967323	6.99061889055279	1.44337131528506	5.14528448194157e-10	3.47802663001063e-08
Merged-chr12-84751454-4	chr12	84751346	84751546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	21666.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	5.45111126234093	5.51939289731448	5.56606771348295	5.87459443678074	5.79154717287891	5.50391362540297	5.76175923502667	5.7165197977303	0.114957036829937	0.678299941352859	0.868034533256964
Merged-chr12-112578845-4	chr12	112578769	112578969	+	821.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9915.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	4.70086428313842	4.38918998306284	4.81076480291937	4.79547632888915	4.52959345775532	4.71484644608751	4.64132082032896	4.84185265773058	-0.0197242502793357	0.95586551272535	0.984313078570438
Merged-chr6-67195257-3	chr6	67195164	67195364	+	932.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71715.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	3.21778985513366	3.21508333312829	3.58688815310752	3.81347202772672	3.14210529024469	2.89937827510064	3.32179069044471	3.15425786818577	-1.30987849202008	0.0350539973983715	0.185468555773336
Merged-chr14-70205107-4	chr14	70204990	70205190	+	981.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271408)	promoter-TSS (NM_001271408)	-467.0	NM_001271408	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	5.73971093578127	5.26929462050454	5.57960707922279	5.66719904854795	4.74722281523084	4.97275179078137	5.33884713399854	5.30244550716841	-0.85833049358195	0.00780575087411318	0.066041310052122
Merged-chr1-39761563-3	chr1	39761455	39761655	+	897.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40566.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	3.98621999620903	3.60865920220792	3.70055498145251	3.67669844745717	3.4226926489655	3.97345269297307	3.63165609377727	3.80102463766461	-0.0931451032960936	0.849864064884226	0.943294572454113
Merged-chr5-106679838-4	chr5	106679761	106679961	+	921.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026856, intron 1 of 6)	intron (NM_026856, intron 1 of 6)	16969.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	4.73278620978802	4.20615777490623	4.66491984879212	4.64091160797451	3.95205127577587	4.04763279550045	4.49392161898977	4.6259865058711	-0.624284768322956	0.14898527725927	0.430948321612862
Merged-chr5-59845926-4	chr5	59845829	59846029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140073.0	NR_040683	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	6.36164389658718	6.21561972579848	6.272513310351	6.95791642509162	6.17591346225682	5.98251649489569	5.97162158056364	6.02093086670512	-0.70280510153709	0.00999557338417594	0.0788862310580174
Merged-chr3-90213703-4	chr3	90213606	90213806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027015)	promoter-TSS (NM_027015)	-9.0	NM_001293741	68328.0	Mm.29355	NM_026677	ENSMUSG00000027935	Rab13	0610007N03Rik|B230212B15Rik	RAB13, member RAS oncogene family	protein-coding	7.57765924168104	7.83246497387634	7.34131180720525	7.20928746459228	7.68024593270004	7.49726005396438	7.41453253831762	7.35692362506907	-0.0120331968422368	0.95439245647485	0.983764634562976
Merged-chr11-40755340-4	chr11	40755228	40755428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009831)	promoter-TSS (NM_009831)	-42.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	8.56624897177698	8.68545700575492	8.91555003855304	9.01562549165455	8.65905271726919	8.46812276881781	8.78217447677153	8.49867444726043	-0.255058917598487	0.140475517308548	0.416760118470072
Merged-chr17-83640795-4	chr17	83640701	83640901	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8906.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	5.67753221836063	5.50935251202895	5.98695031731541	6.21250309779383	5.69612529278937	5.45536476615256	6.23608897543527	6.06407150317666	0.0142016886441381	0.963942702347266	0.987201484998648
Merged-chr7-89412390-4	chr7	89412301	89412501	+	708.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8035.0	NM_008055	14366.0	Mm.86755	NM_008055	ENSMUSG00000049791	Fzd4	Fz4	frizzled class receptor 4	protein-coding	3.98144013241154	3.46738948214498	4.02161026869253	4.26056938511446	2.88341669560675	3.21611918900762	3.08942488900428	3.24393295594776	-3.46685715324199	7.82029224989823e-07	2.7929783344481e-05
Merged-chr15-65786095-4	chr15	65785950	65786150	+	799.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356582)	promoter-TSS (NM_001356582)	-970.0	NM_133766	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	3.91121878871153	3.98310807590709	3.46975433088682	3.91753400148287	3.86262913155997	3.77090713096048	3.69500528928618	3.90944023798723	-0.0809372053931155	0.86347072241732	0.948591391532472
Merged-chr7-96213427-3	chr7	96213333	96213533	+	863.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310760, intron 1 of 32)	intron (NM_001310760, intron 1 of 32)	1762.0	NM_001310760	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	4.01172294747841	3.71968783317093	3.93363165381126	3.44402531321294	3.21215937444156	3.36762177700296	3.09853733471545	3.38031297001174	-1.81616700591115	0.00156321404724408	0.019326255492912
Merged-chr2-132107790-4	chr2	132107689	132107889	+	912.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	37319.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	4.66920786936683	4.28716859022021	4.66998233948074	4.37716447949525	4.29834572647683	4.47238267300723	4.57410722260686	4.59274490249241	-0.0381251468624541	0.919634419006346	0.970343257381288
Merged-chr7-35065095-4	chr7	35064982	35065182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8516.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	7.32234722486085	7.05018430183291	6.86238302366213	7.09295114789059	7.26789058737305	7.08192679260686	7.16280722949133	7.12650396024593	0.101649371097358	0.60114184645368	0.827071740947179
Merged-chr19-42139966-3	chr19	42139882	42140082	+	750.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-7407.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	3.48125528952028	3.62690319140136	3.42959962783095	3.328356054536	3.36953418486867	3.30844922023829	2.9834263399456	3.25743010139132	-0.812819065250565	0.14579471622931	0.425569903895265
Merged-chr9-7870694-4	chr9	7870589	7870789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	ORR1C2|LTR|ERVL-MaLR	2481.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	5.851575567568	6.12043071455245	6.01194319522657	5.28811608582529	6.33455508807611	6.20833558967454	5.93784083622045	6.0288216551103	0.475458493385434	0.105953897170873	0.358568953081721
Merged-chr3-102715425-4	chr3	102715276	102715476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19394.0	NM_027533	70747.0	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding	5.55512362081211	5.48962595028023	5.18386543193811	5.51084424783643	5.16275397760144	5.32567970412388	5.31397522890308	5.14684660664794	-0.387269046935369	0.180769875602419	0.477181528260466
Merged-chr12-40551494-4	chr12	40551409	40551609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	105456.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	5.96918265162897	6.31837868706399	6.22533369376567	6.24720915420291	6.18621368011247	6.36194324455541	6.52741162969937	5.91805513383893	0.0960092720679413	0.698578695677895	0.87844064975986
Merged-chr10-98514994-4	chr10	98514901	98515101	+	902.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163134.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	4.24445767156733	4.75556841262907	4.72351365120879	4.52984577699933	4.22955249628109	4.21760592234689	4.31911986135694	4.24254415293624	-0.768657279806337	0.0490140544679985	0.228888722220379
Merged-chr4-3779109-2	chr4	3779009	3779209	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	56546.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	3.25422719123867	3.24057176031822	3.19514170580771	3.17806256422037	3.3389416059028	3.10785367544238	3.18384960580271	3.60532486920255	0.402592068924837	0.460007613457444	0.742300655594817
Merged-chr7-24373563-2	chr7	24373474	24373674	+	840.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163510, intron 1 of 8)	intron (NM_001163510, intron 1 of 8)	3311.0	NM_008433	16534.0	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	3.03901440544041	2.62866003259914	3.10071822354484	2.80181022244137	3.16927918196444	3.38481862605751	3.14654873941282	3.2134784046088	1.3471168635004	0.0270783030083314	0.156514732272284
Merged-chr7-16264676-1	chr7	16264576	16264776	+	636.0	f0_balb.idr	Intergenic	B3A|SINE|B2	-5136.0	NM_007577	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	3.40439338368928	3.6717210342634	3.82594072248981	3.81144813510874	3.52815003894392	3.69463508159798	3.51031794833251	3.57710467841223	-0.381591670882121	0.437829799367428	0.7260340902333
Merged-chr2-167649515-4	chr2	167649480	167649680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 2 of 5)	intron (NM_145538, intron 2 of 5)	11964.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	7.06005717492947	6.82749475877971	7.2241761748781	7.25028908147119	6.62273135706593	6.79888519438821	6.51988327676901	6.71137746754934	-0.621679852323303	0.00299526434843771	0.031954424618922
Merged-chr5-92381933-4	chr5	92381835	92382035	+	898.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-6199.0	NM_181728	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	4.51437467429399	4.15730024873105	4.23156978215405	4.2157824319203	4.72256374351438	4.64855359823447	4.91942441463458	5.08348625759691	1.25902651207498	0.000562324770165674	0.00848343828563334
Merged-chr14-65374988-3	chr14	65374893	65375093	+	999.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199029, intron 1 of 9)	intron (NM_199029, intron 1 of 9)	16317.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	3.80568699628692	4.67986646760585	4.58562596171293	4.56737323298753	4.18212830329129	3.99080184126639	3.96585541698351	4.08490196341331	-0.972663929361999	0.0339988059531503	0.181941283282406
Merged-chr8-66391780-4	chr8	66391714	66391914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 5 of 7)	intron (NM_175188, intron 5 of 7)	5513.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	6.13456713251295	5.88247987557216	6.37426766443821	6.5816386417242	6.0354754198452	5.96787440573848	5.97745703698261	6.13126268117939	-0.392402279975091	0.134651986535663	0.408489696527381
Merged-chr18-46770481-4	chr18	46770384	46770584	+	946.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009681, intron 3 of 5)	intron (NM_009681, intron 3 of 5)	28608.0	NM_009681	11777.0	Mm.312536	NM_009681	ENSMUSG00000024480	Ap3s1	-	adaptor-related protein complex 3, sigma 1 subunit	protein-coding	4.54330972660004	4.42625606042037	4.70109218868108	4.93948151903094	4.57863665291661	4.28595089154744	4.91159933031037	4.49871660927586	-0.196411547234207	0.614953158963103	0.834205058216801
Merged-chr11-55100088-3	chr11	55099990	55100190	+	916.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010299, intron 1 of 3)	MIRb|SINE|MIR	2105.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	3.62145328158791	3.13179937521479	3.466161430497	3.75190501625487	3.42420860314938	3.46392969725192	3.50612616253234	3.40793382392907	-0.243304377487513	0.6524481843812	0.854661734257232
Merged-chr5-120749902-4	chr5	120749801	120750001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145227)	promoter-TSS (NM_145227)	-53.0	NM_001347448	246728.0	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	6.21524641372388	6.49297244807514	6.55834571976742	6.66177879249497	6.46529453192476	6.28705211356836	6.60092243058863	6.53781264252962	-0.0378487625502075	0.866665379780293	0.950019210311976
Merged-chr13-20091440-4	chr13	20091373	20091573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	CpG	966.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	6.05225189170356	6.20306797050466	6.55967379625474	6.18483023346216	6.32569267864679	6.86593709501304	6.30839369157584	6.60042970323619	0.413677646794835	0.0977584034851944	0.342560156519749
Merged-chr8-88137847-4	chr8	88137749	88137949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106039)	promoter-TSS (NR_106039)	-36.0	NM_172757	234549.0	Mm.36291	NM_172757	ENSMUSG00000031657	Heatr3	C030036P15Rik	HEAT repeat containing 3	protein-coding	6.27646947944141	6.23184942778872	6.14179813576891	6.31035498579386	6.25272110563195	5.85826320363878	6.29914450597537	6.2913276245362	-0.0805739603024983	0.730821165288256	0.893292801745622
Merged-chr8-94371594-4	chr8	94371509	94371709	+	866.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14820.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	3.76671445566526	3.58069592230906	3.71590476759507	3.78795623977317	3.91148489038875	3.6024033684144	3.89231046289351	3.71384065055326	0.219887002881692	0.633882708911258	0.844900836080454
Merged-chr15-31572518-4	chr15	31572434	31572634	+	950.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181588, intron 1 of 5)	MTD|LTR|ERVL-MaLR	3701.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	4.62031646302241	5.02126612705982	4.93334160615935	5.20193376095874	4.85362917149566	4.7988365073634	4.94349136485844	4.85887224101094	-0.231538150985657	0.495257198262699	0.765570679090165
Merged-chr7-45491521-3	chr7	45491395	45491595	+	770.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290999, intron 1 of 9)	intron (NM_001290999, intron 1 of 9)	-2690.0	NM_027903	71755.0	Mm.34208	NM_027903	ENSMUSG00000011382	Dhdh	1300018L09Rik|AA591799|B830008H07Rik|Xld-1|Xld1	dihydrodiol dehydrogenase (dimeric)	protein-coding	3.33793485370015	3.46781368698661	3.5073542265819	3.5620479359179	3.3200071039678	3.38859915492279	3.4933187034211	3.55702859546522	-0.132343676350509	0.793305908631134	0.919945390221731
Merged-chr1-177981516-4	chr1	177981409	177981609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-9889.0	NR_155538	545391.0	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	5.28114093704513	5.07066276725867	5.40323346502249	5.56807003852035	5.55220042636683	5.17955599185868	5.48604879359176	5.72778591557398	0.257932613676001	0.397762230685764	0.696054529321669
Merged-chr8-122281966-4	chr8	122281862	122282062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009569)	promoter-TSS (NM_009569)	-179.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	9.07252910472964	9.18890527784504	8.81916103531795	8.78709702081222	9.05969179922294	9.18690080506382	9.15444778993429	8.90061331142228	0.128814791538775	0.434423114055879	0.723740265310319
Merged-chr14-55745686-4	chr14	55745585	55745785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026403)	promoter-TSS (NM_026403)	-1.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	7.09979030538779	7.02091140368763	6.50546473178185	6.87814924963851	7.17471731044369	7.277458100952	6.94431457188282	7.20663076504615	0.358415387050324	0.0924904534307974	0.332721363887815
Merged-chr17-88064146-4	chr17	88064039	88064239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	793.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	5.21094704223983	4.72361534500325	5.08350711325847	5.2498483896272	4.89929236801228	5.11776448286867	5.32883023558965	5.43100083622807	0.210828132688171	0.528656043530504	0.785185053886524
Merged-chr19-18639158-3	chr19	18639053	18639253	+	850.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145497, intron 2 of 8)	intron (NM_145497, intron 2 of 8)	7137.0	NM_145497	225994.0	Mm.211595	NM_145497	ENSMUSG00000037847	Nmrk1	AA408380|D630020N23Rik|Nrk1	nicotinamide riboside kinase 1	protein-coding	4.63020651019275	4.20097839513096	4.66734971150173	5.39580970446388	3.97348154862927	3.9073185281169	4.2765552144005	4.29311678485932	-1.60138221542543	0.000790041291660697	0.0111289034433241
Merged-chr6-135175718-2	chr6	135175677	135175877	+	803.0	f0_balb.idr|f1_balb.idr	Intergenic	B1_Mus2|SINE|Alu	-7562.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	2.64721638098499	2.6386101240921	2.7574462639162	2.42255713837882	2.17205856166436	2.35089978550322	2.24221577397157	2.16711485787151	-2.66104622606835	0.00270573620721638	0.0294752980553191
Merged-chr12-102297199-4	chr12	102297106	102297306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	RLTR11A2|LTR|ERVK	13565.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	6.86282546450262	6.52790979938868	7.07062848869872	7.17412561035251	6.74931452448645	6.60400640309918	6.55017924085134	6.51128315982518	-0.466290225357289	0.0431810656242427	0.211475510531717
Merged-chr6-54811799-4	chr6	54811692	54811892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5124.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	5.82384814684189	6.0183604123649	5.72406383997773	6.41889423655308	5.68766933205032	5.57921061695543	5.81908856594258	6.13978195868575	-0.356836395249248	0.226130422424981	0.534678729418644
Merged-chr6-124496169-4	chr6	124496057	124496257	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181344, intron 2 of 5)	HAL1|LINE|L1	3044.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	5.84141531313107	5.84040551824296	5.62918611112338	5.79880075620394	5.5048602560659	5.58059880559031	5.34595003570542	5.33681103587974	-0.568868581238317	0.0324272572813981	0.176274610205639
Merged-chr12-8320210-4	chr12	8320082	8320282	+	888.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021429, intron 2 of 6)	intron (NM_021429, intron 2 of 6)	6749.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	4.05511582197519	3.6339655699936	3.71938486667032	3.88723811024606	3.94370964458016	3.89264285084695	3.90536792590221	3.60285520717516	0.0325856095181044	0.94391789430242	0.979866422670424
Merged-chr9-53706465-4	chr9	53706369	53706569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175562)	promoter-TSS (NM_175562)	-237.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	9.01298706292874	9.11660920583119	8.92319747428657	8.7189100366406	9.14944899278588	9.22031974014624	9.30266763766617	8.95122099925976	0.266383074194436	0.101730591343851	0.350047264556928
Merged-chr2-31731088-3	chr2	31730989	31731189	+	737.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283047, intron 2 of 11)	intron (NM_001283047, intron 2 of 11)	-28850.0	NM_009594	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	3.72132511655023	3.5725576834662	3.40219579456696	3.49442854799118	3.94626561606417	3.24717218650398	3.39014573750734	3.56996027282143	0.090805653152718	0.867385363960182	0.950313421774078
Merged-chr11-120347963-3	chr11	120347871	120348071	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105900)	promoter-TSS (NR_105900)	524.0	NM_001313923	11465.0	Mm.196173	NM_009609	ENSMUSG00000062825	Actg1	AL023024|Actg|Actl|E51	actin, gamma, cytoplasmic 1	protein-coding	5.23938642140114	6.35063637855525	4.80626869578008	4.28480362996628	6.53008797725426	6.92223939101434	5.67849960850936	6.10746846743148	1.48015906506418	0.0664598120179345	0.274775961874103
Merged-chr7-19841522-4	chr7	19841401	19841601	+	992.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10502.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	5.14960485508064	5.47910049421767	5.15047082325112	5.3006493879302	5.63781622671455	5.03071037812106	5.05712977030501	5.33356450958875	0.0440954172434101	0.890719500935608	0.959104227034594
Merged-chr17-23803042-4	chr17	23802932	23803132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175229)	promoter-TSS (NM_175229)	-155.0	NM_175229	75956.0	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	8.75531922059167	9.00392696033204	8.80214800224625	8.51259916636659	8.82071316520868	9.26913651630361	8.90395655636208	8.78026510560833	0.223638524776241	0.22245961643266	0.530502983049462
Merged-chr2-120578494-4	chr2	120578393	120578593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	intron (NM_009222, intron 1 of 7)	10822.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	6.69177621540462	6.72403087916254	6.51679384602141	6.56592874691313	6.83376008138529	6.76039959263494	6.7725582322767	6.76072319196369	0.229487048469392	0.24732647028683	0.558407233154394
Merged-chr2-165234764-4	chr2	165234665	165234865	+	907.0458369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174988)	promoter-TSS (NM_174988)	-28.0	NM_174988	104010.0	Mm.151819	NM_174988	ENSMUSG00000053166	Cdh22	-	cadherin 22	protein-coding	4.2466634458118	4.48272555485224	4.19782417957792	4.15927604485312	4.47564883369692	4.827813899204	4.36559093043129	4.54616199758687	0.665637760403509	0.0817053629937687	0.310197273474577
Merged-chr17-29549734-4	chr17	29549633	29549833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162901)	promoter-TSS (NM_001162901)	-69.0	NM_198647	381085.0	Mm.328934	NM_198647	ENSMUSG00000042203	Tbc1d22b	BC045600	TBC1 domain family, member 22B	protein-coding	6.65692740612771	6.37039930786435	6.25582125806486	6.5609342720041	6.43924677750456	6.07308480601294	6.47257750534358	6.50119411882026	-0.129590230819706	0.576893462392858	0.813804851948144
Merged-chr12-113042067-4	chr12	113041959	113042159	+	891.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	27551.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	4.35453233641342	3.78698970325486	4.35524378150272	4.07779160968093	3.77710182502494	4.11217405540369	4.48374514922111	4.31177059804786	0.087875091314365	0.849410515171691	0.943120119372541
Merged-chr3-31107888-3	chr3	31107791	31107991	+	912.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	12833.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	3.457735343678	3.83277328855483	4.04426907613274	3.77501718671659	3.43535640313192	4.03174160722514	3.84357442523266	4.04164602282172	0.178500209553745	0.724761834066921	0.890443127419511
Merged-chr14-75192946-4	chr14	75192839	75193039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	-49348.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	6.40544017315038	6.89707383439423	6.03807002546293	5.41391555308009	6.72711634360486	6.10006702422992	5.98442005764102	6.20198196194143	-0.0103526660978855	0.976943293857089	0.991819874535068
Merged-chr11-54534053-4	chr11	54533951	54534151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 1 of 28)	RLTR14|LTR|ERV1	11206.0	NM_001252496	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	5.45399239147087	5.60172727751344	5.51002654439472	5.66683442782823	5.61914671601942	5.24240721644091	5.27964635419336	5.30206804635856	-0.32180013130077	0.259163970112838	0.570991804521054
Merged-chr15-64186885-4	chr15	64186798	64186998	+	889.095825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	125775.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	4.44913614947198	4.57650508671101	5.48905218733138	5.21504302757223	4.43015112711615	4.37302223634515	4.87348098429921	4.74879154343171	-0.788130110966748	0.0661388482168468	0.273974106804804
Merged-chr4-87759292-4	chr4	87759181	87759381	+	809.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47042.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	3.29798926007687	3.4615323103744	3.64557829990871	3.68865436858416	3.54976893697113	3.47645948573019	3.72693570168968	3.74095948037138	0.267928309910728	0.594252729735394	0.823411261518897
Merged-chr15-6602635-4	chr15	6602529	6602729	+	958.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	22782.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	5.55877021910377	5.49582027899917	5.0521476863476	5.09781933114293	5.10934133448632	5.08319851586492	4.71817190501452	4.97743627704922	-0.617832451717898	0.0639163769437928	0.268565749379116
Merged-chr7-75702893-5	chr7	75702951	75703151	+	761.016663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 16 of 36)	MIRb|SINE|MIR	-145287.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	3.45649442865442	3.41881495251048	3.45697673389179	3.2988704164183	3.20621335039577	3.62386833569074	3.27512851460082	3.34413854001845	-0.133236464555452	0.80003443988178	0.922854364184118
Merged-chr12-82260367-4	chr12	82260267	82260467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-50982.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	5.55133937538374	5.69036111925504	5.18670519425948	5.65346431191501	5.15606421286124	5.33058493494696	5.88675536479695	5.49432898398416	-0.0907803565694873	0.773895961618981	0.91166330938482
Merged-chr5-123699393-3	chr5	123699281	123699481	+	857.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027494, exon 14 of 14)	3' UTR (NM_027494, exon 14 of 14)	-15020.0	NM_001359222	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	3.78055563876977	3.54149834239921	3.6743429938111	3.59395736851964	3.78186131070075	3.73614755267736	4.19058814064875	3.82906205110702	0.736851954891576	0.111317137974233	0.368681299510704
Merged-chr11-107028083-4	chr11	107028019	107028219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163473)	promoter-TSS (NM_001163473)	-104.0	NM_001163473	69066.0	Mm.40679	NM_001163473	ENSMUSG00000078607	1810010H24Rik	-	RIKEN cDNA 1810010H24 gene	protein-coding	6.15430642043875	6.21147136611127	5.6375714823485	6.00298393125393	6.31514055646938	6.00327733730877	6.04458858029875	5.87118502506292	0.0896335697514692	0.733301349561309	0.894443416491688
Merged-chr10-77259206-4	chr10	77259108	77259308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_026944)	promoter-TSS (NR_026944)	15.0	NR_026944	100169878.0	Mm.420901	NR_026944	ENSMUSG00000078444	Gm10941	-	predicted gene 10941	ncRNA	8.58794439072197	8.65670550198581	8.28864010746655	8.41016847020501	8.66344018206763	8.57842035479115	8.66820398592017	8.59753757267054	0.170743475024611	0.276907079284057	0.588964507477447
Merged-chr5-116024535-4	chr5	116024479	116024679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031869)	promoter-TSS (NM_031869)	-151.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	6.73825537214435	6.7540392452417	6.82490705914088	6.7327116285246	6.71653394548269	6.87117523446824	7.08235169676173	6.719830331943	0.128665813541548	0.525837378395533	0.783367294725902
Merged-chr2-73496169-4	chr2	73496066	73496266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-10413.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	8.15365256504727	8.43175631628699	8.74496973431883	8.42125154968733	8.42747498445341	8.44196619496048	8.37274914912416	7.91309377233446	-0.185543447074417	0.346330822988412	0.654632117521103
Merged-chr4-32551527-2	chr4	32551427	32551627	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 2 of 4)	B3|SINE|B2	20135.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	3.54715190201534	3.69247175145476	3.38302425823547	3.08942703290354	3.42951855202375	3.37413212322077	3.48087158699669	3.49309641538375	0.0221227339005638	0.967472999130237	0.988536511573071
Merged-chr10-96751092-1	chr10	96750992	96751192	+	748.0	f0_balb.idr	Intergenic	Intergenic	134091.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	3.91392127624757	3.5859101519868	3.73219281496414	3.83812334027712	3.46212572336792	3.69283836851045	3.50601300278558	3.26373991985689	-0.924583240077464	0.0674096224746584	0.277091395258304
Merged-chr6-91712292-2	chr6	91712192	91712392	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	28225.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	3.06886657619471	3.03963403274963	3.56112708264505	3.22162140870626	3.18882663845738	3.47993875328397	3.18458457274278	3.36468571479468	0.257387062301526	0.650337891590805	0.853226674764141
Merged-chr9-7272424-4	chr9	7272327	7272527	+	982.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008607)	promoter-TSS (NM_008607)	-87.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	5.89498725231669	5.45009337946459	5.83377614771553	6.12523466246932	5.09464249966498	5.089706003596	5.51986153003926	4.8559538804601	-1.2118041529226	0.000175204792625603	0.00325711943503774
Merged-chr2-129403098-3	chr2	129402990	129403190	+	816.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31951.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	3.01526977811408	2.64501739718669	2.96628393366605	2.86328585299798	2.26841026294458	2.42863997204245	2.31956659726924	2.40310618606672	-3.74109580526919	0.000190725225597887	0.00349527055428218
Merged-chr2-140778358-4	chr2	140778270	140778470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	-106894.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	5.949721358107	6.18871660727908	6.14689300483303	6.48390924930103	6.28111105924969	6.34217959347354	5.94371478150762	5.99277765303995	-0.107686709092571	0.674781215327602	0.866330912606255
Merged-chr11-96975018-4	chr11	96974915	96975115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	2673.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	6.19939733613602	6.27198809638186	5.64506929411033	6.03576662459067	6.13046260573214	6.08289594122559	5.9888074739432	6.0366665517942	0.00230657396437895	0.99274196595385	0.997380030411996
Merged-chr7-141024929-4	chr7	141024835	141025035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8043.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	6.18624109386133	6.11428875093601	6.20673021504247	6.22479786822	6.27344271892313	5.842865751208	6.35305537002563	6.14323011761172	-0.0156965434373135	0.947277248329433	0.981119696272421
Merged-chr8-80319200-3	chr8	80319067	80319267	+	854.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-174878.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	4.05741562617383	3.68916739556069	3.64981864811655	3.88179204250959	3.22585700987894	3.65562712503851	3.46601044189332	3.59319335628736	-1.10620781647731	0.0316758166527473	0.173541522042107
Merged-chr9-108120850-4	chr9	108120747	108120947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007567, intron 3 of 11)	intron (NM_007567, intron 3 of 11)	-12871.0	NR_126078	76873.0	Mm.436935	NR_126077	ENSMUSG00000102224	4930447F24Rik	-	RIKEN cDNA 4930447F24 gene	ncRNA	5.70763665220607	5.81495136121586	5.56310126423264	5.24657675042742	6.47625672200967	6.46978742877721	6.20934037309441	6.5552744743891	1.3430922082015	2.15683895590398e-07	8.62965936156772e-06
Merged-chr11-70792656-4	chr11	70792575	70792775	+	837.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 4 of 4)	MLT1A1|LTR|ERVL-MaLR	19886.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	4.32298781818035	3.9259368503699	3.92349126929801	3.75835736092347	4.49791161346209	4.86187120308759	4.16869325160467	4.44399412302215	1.29164139994269	0.00268165598090428	0.0292801949784915
Merged-chr8-19162114-3	chr8	19162029	19162229	+	737.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4242.0	NM_153115	78128.0	Mm.229357	NM_153115	ENSMUSG00000079842	Spag11a	9230111C08Rik|Bin1b|EP2Q|EP2e|Spag11	sperm associated antigen 11A	protein-coding	3.35266985194576	3.38143940173973	3.40941716863234	3.36930470380039	3.42955294962618	3.52287575432303	3.28282269081385	3.4075779283206	0.124229740669347	0.805303546242559	0.925171083261684
Merged-chr6-87552585-4	chr6	87552496	87552696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19337.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	7.28604397979988	7.68467709523828	7.39001266044082	6.95094082045344	7.75234497096688	7.29330127810564	7.36307482830758	7.20499369156549	0.108874195793027	0.639895703664031	0.847798680126239
Merged-chr11-94707835-4	chr11	94707746	94707946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-3347.0	NM_001007584	432589.0	Mm.342314	NM_001007584	ENSMUSG00000056008	Gm11541	-	predicted gene 11541	protein-coding	6.84947387712521	7.03514392738522	6.93124645360557	6.89033369363064	6.87337214608586	6.98513441729647	6.92184477234295	7.00202845124469	0.0216498929253466	0.908813780328201	0.966100563913989
Merged-chr1-144309481-3	chr1	144309381	144309581	+	872.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-60377.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	4.02809944093832	3.98047717576551	3.53846847885503	3.86230945529761	4.04454788047925	4.19738006804473	3.8686586892678	3.83079894975961	0.350223636033597	0.442244750648396	0.729012256605129
Merged-chr19-16773754-2	chr19	16773654	16773854	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173028, intron 1 of 71)	intron (NM_173028, intron 1 of 71)	7179.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	3.2020582422523	3.18035551075005	3.36228699679857	3.03646416282688	2.78189852181067	3.19592170151064	2.87500199353009	3.30922720044081	-0.564392671937629	0.360619311334327	0.665919212407671
Merged-chr8-41024836-3	chr8	41024738	41024938	+	833.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015457)	TTS (NR_015457)	7370.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	4.00353546085038	4.00124414332804	3.85538744892122	3.79384615996706	3.99520149710496	3.97610567882659	3.98683495904452	4.00171452816779	0.228092595691614	0.58968468787532	0.820539533210917
Merged-chr17-34932491-2	chr17	34932391	34932591	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010893, intron 2 of 5)	intron (NM_010893, intron 2 of 5)	1238.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	2.65259427779966	2.79072941104814	2.58397998602848	2.60797696915549	2.70147956096219	2.82438542945114	2.7713248760865	2.95010413544989	0.73865566217007	0.242307215265802	0.553025913252551
Merged-chr17-13867631-4	chr17	13867517	13867717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 22 of 33)	intron (NR_151731, intron 22 of 33)	-80756.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	7.29836607183574	6.80711226857919	7.56673737614962	7.44066654218905	6.58633555803145	6.67143603921493	7.05922575060618	6.83124640118624	-0.709201035377052	0.00283960920278455	0.0306336076758111
Merged-chr15-37961132-4	chr15	37961026	37961226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199476)	promoter-TSS (NM_199476)	-71.0	NM_199476	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	9.00631901102953	9.09243153821257	9.04570980583939	8.90745624780786	8.95356264107569	8.8445001572568	9.15874529637372	8.97372766881878	-0.0301784172475442	0.838286865844325	0.938633191613918
Merged-chr6-91617397-4	chr6	91617280	91617480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-66687.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	6.21466887613208	6.0775648618976	6.09278824491343	6.56648997800819	6.19489535557607	6.15806968517127	6.53692994848226	6.13074350589925	-0.0115494440468958	0.963833647994843	0.9871662400506
Merged-chr14-87415940-4	chr14	87415841	87416041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172605)	promoter-TSS (NM_172605)	-642.0	NM_172605	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	7.96373101991783	7.86935799419887	7.99963453542269	8.19531359966581	8.07505260457851	7.99365329511095	8.25133879974241	8.07361585850948	0.10527120990667	0.532099920309822	0.787872711035769
Merged-chr3-101836290-4	chr3	101836208	101836408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172295)	promoter-TSS (NM_172295)	-85.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	5.32202710657092	5.27514101235213	5.63740827894867	5.60980055487306	5.69692896674765	5.70644096757159	5.72867727509607	5.58179036490046	0.336812873809522	0.217542856797103	0.524490060405014
Merged-chr3-20028350-3	chr3	20028285	20028485	+	784.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 4 of 16)	ID_B1|SINE|B4	6925.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	3.59082113740874	3.74830749129742	3.95848202986901	3.53769934594479	3.48854366461743	3.40721843187989	3.40856077794094	3.41905695032202	-0.914558722712522	0.0735121753443308	0.292042369193175
Merged-chr17-31073507-4	chr17	31073402	31073602	+	919.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	15808.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	4.7807894474301	4.96064566912789	4.62790950070792	4.33073498872001	4.46505669650792	5.08883289477471	4.79386161890282	4.45075647599807	0.0715315391989424	0.856836988363107	0.946149550026335
Merged-chr8-10923775-3	chr8	10923661	10923861	+	795.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_030715)	TTS (NR_030715)	4696.0	NR_030715	665306.0	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	3.60402120836152	3.13942072933499	3.56068139857433	3.10408621597754	3.1368885721201	3.05017900732384	3.00021371752264	2.93831248724198	-1.28518370333718	0.0370739891752659	0.19198904878183
Merged-chr2-167661719-4	chr2	167661596	167661796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145538)	promoter-TSS (NM_145538)	-152.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	7.92409584856101	7.93042077826859	7.91131023342609	7.7821248418754	7.8767381538079	7.93023306047324	8.06307606067035	7.40735439008823	-0.0547391298754965	0.774698753720736	0.911985356428425
Merged-chr15-57970354-4	chr15	57970255	57970455	+	981.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081396)	TTS (NM_001081396)	-15548.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	5.07701094501463	5.47674447400283	5.00486057457211	5.15072740407878	5.44233840013097	4.98464637783648	5.67856367971298	5.27124114753608	0.328502254199144	0.308506981967888	0.620843044090819
Merged-chr19-9977962-4	chr19	9977861	9978061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2639.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	6.93582742928413	7.16536565803301	6.75077789079854	5.76339831132173	7.04206315084833	6.75985316084536	6.64272606229668	6.54427263322912	0.0240021793070098	0.939421546230728	0.978089464479734
Merged-chr8-88696881-4	chr8	88696759	88696959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173369)	promoter-TSS (NM_173369)	-169.0	NM_001128170	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	8.86786747466798	9.07969169362555	8.89601277459608	8.88317814870936	8.82802090461354	9.06266369752206	9.0121390027993	8.52361603642752	-0.077164857641693	0.650993269040155	0.853619915940704
Merged-chr12-71309765-5	chr12	71309658	71309858	+	823.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021532)	promoter-TSS (NM_021532)	-126.0	NM_021532	59036.0	Mm.46662	NM_021532	ENSMUSG00000044548	Dact1	4921528D17Rik|AI115603|DAPPER|DAPPER1|FRODO|Frd1|Frodo1|MDpr1|MTNG3|THYEX3	dishevelled-binding antagonist of beta-catenin 1	protein-coding	3.98827633115885	4.11601211518487	4.08606835573555	4.6153717664025	3.86009172685186	3.94905103639829	3.86853926052644	4.12950157492742	-0.771993444340082	0.0911524800379304	0.329916698004701
Merged-chr2-4457895-4	chr2	4457792	4457992	+	986.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	56916.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	4.87041817496169	4.91541314723392	4.91010846815557	4.58513179025138	5.83154897376244	5.29699672201837	5.48225865562473	4.70012539331929	1.09389264259118	0.00297809341266965	0.031809380405224
Merged-chr6-38918928-4	chr6	38918819	38919019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011539)	promoter-TSS (NM_011539)	-67.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	6.57472180712087	6.75318369395671	6.50862661921446	6.70233014431411	6.5459325468994	7.00350153372777	6.79414112314466	6.95145224905529	0.258388854208623	0.232267348196517	0.541891165796319
Merged-chr11-106815600-4	chr11	106815482	106815682	+	975.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177088, exon 15 of 20)	exon (NM_177088, exon 15 of 20)	26330.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	5.83175204324765	6.49432910371315	5.40282632194628	5.21780508435383	6.08414892943874	5.64441570931692	5.63318294187766	5.19247125439558	-0.250520633650793	0.517467653337822	0.778892868568594
Merged-chr5-64959652-4	chr5	64959547	64959747	+	814.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359180, intron 1 of 1)	intron (NM_001359180, intron 1 of 1)	449.0	NM_001359180	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	3.22754844776651	3.36256195464302	3.36095939121378	3.84930467743159	3.65695463791799	3.53782859002909	3.94039974082537	3.64301198348459	0.654520871568706	0.24307465080689	0.554046336966528
Merged-chr1-37479272-4	chr1	37479170	37479370	+	935.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 5 of 15)	L1M4|LINE|L1	9335.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	4.47002891829021	4.85311232478405	4.42591077453858	4.56215505637833	4.73795739422312	4.84553524896978	4.6904721945218	4.46796358380623	0.220070486140981	0.542168915089226	0.793691778334718
Merged-chr13-92844798-4	chr13	92844659	92844859	+	994.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162945)	promoter-TSS (NM_001162945)	-28.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	5.44708931694059	5.47639987985162	5.47594067175842	5.36329982337908	5.3719753740822	5.11711795323743	5.65044490226379	5.65164905068653	0.0525014042633214	0.855453441517726	0.945640332561297
Merged-chr17-27051767-4	chr17	27051662	27051862	+	850.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5542.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	4.35923658239586	4.28066059282377	4.18621290791732	4.3459412629212	4.0857822009523	4.31182681315289	4.21330720037142	4.08729599103299	-0.315621918585484	0.421539042984069	0.714001052191097
Merged-chr4-53122455-3	chr4	53122346	53122546	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	37449.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	4.63389860624063	4.68666819139489	5.03805099012923	4.5097789559199	5.02555018176827	4.93281998593139	5.01315239239159	4.9701890264563	0.556239583747054	0.098209259615134	0.343561060114298
Merged-chr1-91366401-4	chr1	91366334	91366534	+	921.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173395)	promoter-TSS (NM_173395)	4.0	NM_173395	227358.0	Mm.389157	NM_173395	ENSMUSG00000047443	Erfe	4832406C22|Fam132b|myonectin	erythroferrone	protein-coding	4.3513883066551	4.61931280852534	4.21591904554004	4.45869690895947	4.29761176153219	4.07605133793776	4.28929643691372	4.54759046474684	-0.2649052062434	0.504019134416186	0.770622888873344
Merged-chr1-180762867-4	chr1	180762753	180762953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	36810.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	6.75435821967754	6.72251945377549	6.8367124107146	6.74876669752681	6.47766129841723	6.6859808217398	6.17124120353343	6.61824504765326	-0.38207988366165	0.0774820430927974	0.301091573145287
Merged-chr5-125392370-3	chr5	125392274	125392474	+	910.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2357.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	4.35983155732565	4.0168532362566	4.32087140513304	3.5756058407756	3.80653202180822	4.27615463364081	4.12976182280611	4.31799627852194	0.122997884893609	0.799127203410729	0.922434438357924
Merged-chr17-50470042-4	chr17	50469946	50470146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39501.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	6.0095174855545	6.09485113613532	6.50998651163692	6.30895125009609	6.28473440504659	6.27443570330422	6.06713959991182	6.07258009076639	-0.0998474131090306	0.679942792941961	0.868593041138696
Merged-chr11-120932851-4	chr11	120932756	120932956	+	944.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027745)	promoter-TSS (NM_027745)	16.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	4.60949401067214	5.16119540811765	4.37247011099026	4.30053479872666	5.17689249941022	5.02272762222618	4.67254152197949	5.16376199761786	0.75115799795887	0.0589967271807559	0.255824982737557
Merged-chr11-62458457-4	chr11	62458335	62458535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039536)	promoter-TSS (NM_001039536)	-25.0	NM_001039536	327942.0	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	5.79809303778566	6.04756265163251	6.02449905162865	5.53550062388274	6.0603977264096	5.79164960574294	5.86411169551857	6.06075660085023	0.166195142870086	0.535107694442904	0.789588577217386
Merged-chr11-68939816-4	chr11	68939703	68939903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B3A_MM|LTR|ERVK	-12722.0	NM_145746	252868.0	Mm.76826	NM_145746	ENSMUSG00000032921	Odf4	Oppo1	outer dense fiber of sperm tails 4	protein-coding	6.87834349965103	6.64005135793505	6.41504775342102	6.65098278075963	6.75910244907628	7.00244526072999	6.66475506611651	6.76667637893102	0.2063540219507	0.33345327403808	0.644188029374994
Merged-chr17-47658979-3	chr17	47658879	47659079	+	918.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198421, intron 2 of 6)	intron (NM_198421, intron 2 of 6)	28289.0	NM_198421	224836.0	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	4.48009367411894	3.69179085498134	4.17670806279844	4.63224509494434	3.58506379941571	3.77638166962677	3.87258510867138	3.83165084426523	-1.45865971084703	0.00368704981194374	0.0375558841677652
Merged-chr5-92042796-4	chr5	92042707	92042907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276315)	promoter-TSS (NM_001276315)	-111.0	NM_001276315	53886.0	Mm.44963	NM_016912	ENSMUSG00000029403	Cdkl2	5330436L21Rik|AI505225|KKIAMRE|Kkm	cyclin-dependent kinase-like 2 (CDC2-related kinase)	protein-coding	7.04847352714341	7.14273341750365	7.57957988252642	7.23991738471312	7.11438817148636	7.3787009925654	6.93745203879623	6.92743785955155	-0.225451159297983	0.293807343569622	0.606204004660023
Merged-chr17-10572741-3	chr17	10572605	10572805	+	615.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	116489.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	2.69591318559378	2.69666966104306	2.75406093280749	2.67351013300227	2.23384809183324	2.53880116614119	2.42858611932286	2.4343119311537	-1.77433368349302	0.0195593588998065	0.126037987246906
Merged-chr10-20769678-4	chr10	20769574	20769774	+	898.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44596.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	3.8079740177732	3.80877891443719	3.63155854181977	4.06266918659016	4.59652423908351	3.81319356009112	3.84695361959408	4.14440804352504	0.801854915109488	0.106659992921839	0.360098260977259
Merged-chr7-72238817-2	chr7	72238717	72238917	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024703, intron 4 of 22)	intron (NM_001024703, intron 4 of 22)	67778.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	2.38888374178697	2.30508431899222	2.50715492942031	2.20284695202141	2.21870154592558	2.05148499054484	2.25204708335884	2.18813978103456	-1.09364657776975	0.171021286868718	0.464153570956064
Merged-chr14-67723377-3	chr14	67723290	67723490	+	680.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111028, intron 1 of 11)	ORR1D1|LTR|ERVL-MaLR	7292.0	NM_001285933	105440.0	Mm.6720	NM_134073	ENSMUSG00000034327	Kctd9	-	potassium channel tetramerisation domain containing 9	protein-coding	3.65372816864446	4.07620014473878	3.54193569188172	3.22627998297635	3.8378934644289	3.66016866755613	3.46936458925877	3.80404720170188	0.132150838045241	0.807613051617797	0.925805086019184
Merged-chr1-36231085-4	chr1	36230976	36231176	+	920.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198899, intron 2 of 40)	intron (NM_198899, intron 2 of 40)	13226.0	NM_198899	320011.0	Mm.261022	NM_198899	ENSMUSG00000037470	Uggt1	0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik|GT|UGT1|Ugcgl1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding	4.50694761607898	4.53438631176973	4.50764664028963	4.8482778610766	4.62283122792762	4.45210511220342	4.78894312255567	4.70330294112072	0.0453346231208135	0.900986037601011	0.963325736633273
Merged-chr5-147894820-4	chr5	147894687	147894887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027872)	promoter-TSS (NM_027872)	28.0	NM_001357002	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	7.49519142500786	7.18751232873295	7.33207460955872	7.4606386854252	7.39749497910489	7.49872202012457	7.30584637082742	7.32697605447302	0.00829791603922777	0.963511821196023	0.986968281921325
Merged-chr6-72601934-4	chr6	72601826	72602026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026159, intron 3 of 10)	intron (NM_026159, intron 3 of 10)	3298.0	NM_026159	67442.0	Mm.305108	NM_026159	ENSMUSG00000056666	Retsat	0610039N19Rik|C80029|MMT-7|Ppsig	retinol saturase (all trans retinol 13,14 reductase)	protein-coding	5.63696330527288	5.79576785002157	5.52603131077838	5.79141538773961	5.84217021236862	5.67382481173904	5.93587463947684	5.83181773868728	0.201077832858724	0.431676469452277	0.721802135828124
Merged-chr13-112753535-4	chr13	112753439	112753639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47238.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	6.03060579851459	6.2708863306872	6.05378717939796	6.42420779177427	6.08573636708396	5.96590973902062	6.24238286670104	6.51926053817713	-0.00418929725650906	0.986846551965686	0.995205005360357
Merged-chr18-58531461-4	chr18	58531372	58531572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24768.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	6.9706082784349	6.63224647231745	7.17526534608759	7.36657894274544	6.96317575098414	6.99787556864169	7.21399631065408	7.28611374570908	0.0611568049941584	0.790400544662145	0.918829338045187
Merged-chr9-21011177-4	chr9	21011066	21011266	+	956.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-4774.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	4.75243031635186	4.47115424771153	4.02927710784058	3.80644777274111	4.71311659588986	4.81759916550952	4.82879620997154	4.64152530791079	0.990116113424197	0.0215173724443404	0.134349566071553
Merged-chr4-134762598-4	chr4	134762496	134762696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	5408.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	6.88082508639102	6.68018391690325	7.17732320789485	7.09922299175011	6.8219625256651	6.52092547793178	6.76485731775283	6.9293197845	-0.289231156822658	0.186121608458116	0.484014101364226
Merged-chr5-52741590-4	chr5	52741483	52741683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025951)	promoter-TSS (NM_025951)	9.0	NM_025951	67073.0	Mm.248647	NM_025951	ENSMUSG00000029186	Pi4k2b	2610042N09Rik|4933409G22Rik	phosphatidylinositol 4-kinase type 2 beta	protein-coding	5.72001525088027	6.08987373993729	5.69459206118448	5.9768586246266	5.84897935521405	5.99690517561576	5.81580798236286	5.99715059076152	0.0320952930829225	0.89943228401405	0.962569456167014
Merged-chr11-70459837-4	chr11	70459742	70459942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151497, exon 1 of 6)	non-coding (NR_151497, exon 1 of 6)	142.0	NR_151499	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	6.77342355940255	7.75236832059729	7.07590804190326	6.425463921218	7.2545618097287	7.15637656334226	6.66406157258638	6.29066251499956	-0.289630993590897	0.553845876283034	0.80043514274805
Merged-chr11-120853731-4	chr11	120853652	120853852	+	809.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 18 of 18)	intron (NM_027745, intron 18 of 18)	-29205.0	NM_007988	14104.0	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	4.12963128691264	4.37260271674047	4.17837009698392	3.73352537574652	4.26733329155655	4.15401135135161	4.59135459520921	4.35189189581228	0.592445038948968	0.170662071659138	0.463886709030905
Merged-chr17-31003436-4	chr17	31003345	31003545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177465, intron 20 of 21)	intron (NM_177465, intron 20 of 21)	48762.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	4.92340664691247	5.34251731664822	5.48005825081838	5.53819823725311	5.3137039612372	5.10484540566519	5.50395542995068	5.47619860615192	0.00664896682801748	0.983045651938232	0.993940447455246
Merged-chr2-5036607-4	chr2	5036508	5036708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 7 of 13)	intron (NM_001356487, intron 7 of 13)	-23817.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	6.18071277822924	6.38553180901445	5.59491012090311	6.14139393750631	6.26041834527237	6.43259930668733	6.06966426305752	6.15764660111214	0.188393560883645	0.477114679021919	0.753322813116417
Merged-chr10-87840199-3	chr10	87840108	87840308	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18057.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	3.28216149476133	3.38485661407129	3.51515068732314	3.60743636467517	3.29203587356197	3.73496469492708	3.3328068185222	3.56523487088881	0.0862593854983903	0.870223902130435	0.951265716497615
Merged-chr2-52958634-4	chr2	52958524	52958724	+	836.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	100756.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.60282769011054	3.56858104774004	3.60330661084143	3.72862456047282	3.76492777155978	3.54159983157585	3.83453309178214	3.6549348685127	0.222604806479109	0.636025552158929	0.845993735673956
Merged-chr2-164726140-2	chr2	164726040	164726240	+	885.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10835.0	NM_001040055	641368.0	Mm.422380	NM_001040055	ENSMUSG00000074593	Spint5	Gm14316	serine protease inhibitor, Kunitz type 5	protein-coding	3.43911646851482	3.31259107856518	3.20803811458585	3.27274425097799	3.53899048321485	3.31922147990613	3.31665922342305	3.4894646180994	0.412369568418754	0.423201034199547	0.715137610115607
Merged-chr17-46637302-4	chr17	46637199	46637399	+	909.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357130, intron 6 of 15)	intron (NM_001357130, intron 6 of 15)	-7795.0	NM_175168	71461.0	Mm.181833	NM_175168	ENSMUSG00000023972	Ptk7	8430404F20Rik|chz|mPTK7/CCK4	PTK7 protein tyrosine kinase 7	protein-coding	4.30778275506444	4.19261742505365	3.83631405559169	4.22456065868374	3.9507838112393	3.89858704679813	4.07630912864087	4.22433480016033	-0.302214143326713	0.48172891837375	0.756755039529514
Merged-chr10-51452324-2	chr10	51452220	51452420	+	977.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL1|LINE|L1	-28292.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	3.37676161599543	3.15201587731971	3.21280320110716	2.96076465087472	3.35541153208397	3.20104640724323	3.07998628127341	3.32285760332255	0.285111950399016	0.612085733993773	0.832680684364583
Merged-chr6-87672283-4	chr6	87672193	87672393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170489)	promoter-TSS (NM_001170489)	-125.0	NM_001170489	72103.0	Mm.31770	NM_024251	ENSMUSG00000030051	Aplf	2010301N04Rik|AI452191	aprataxin and PNKP like factor	protein-coding	8.76478192166492	8.64861624047067	8.64706957809549	8.67024192159367	8.69487563689148	8.534497071957	8.73855973681708	8.57746961446307	-0.051971212826536	0.720851473871599	0.88846247810902
Merged-chr3-144679759-1	chr3	144679659	144679859	+	666.0	f0_balb.idr	Intergenic	Intergenic	40576.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	4.12910873563706	3.96648017017685	4.73826642052679	4.56644461091155	4.12720719273136	4.15334567885472	3.95867259547139	4.12724693722927	-0.738936051501706	0.096646019408851	0.340574096588254
Merged-chr8-77535205-3	chr8	77535078	77535278	+	798.744446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14219.0	NM_001081240	102182.0	Mm.197630	NM_178903	ENSMUSG00000037134	Prmt9	AI931714|Prmt10	protein arginine methyltransferase 9	protein-coding	4.11563434544177	3.86044441078772	3.8196969103887	3.58898822891972	3.27843281806667	3.54971947794487	3.59830431352219	3.61056839492122	-1.08388851986819	0.0352494728983245	0.186170678298571
Merged-chr6-82772841-3	chr6	82772743	82772943	+	899.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	1611.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	3.5581130094303	3.8040136249719	3.44316198425982	3.50047513236065	3.72489551809088	3.78241010044305	3.5448121545992	3.4414546430336	0.160867337254552	0.744240704859183	0.899239415948819
Merged-chr8-84012594-4	chr8	84012497	84012697	+	858.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291292)	promoter-TSS (NM_001291292)	-877.0	NM_001291292	70134.0	Mm.41017	NM_001291292	ENSMUSG00000074217	2210011C24Rik	-	RIKEN cDNA 2210011C24 gene	protein-coding	4.06253808478879	4.25480539825361	4.06311720040221	4.35137839593827	4.22696460563451	4.1866567920374	4.09484669541003	4.28891672260212	-0.00431698801630986	0.991465548698997	0.996745793587504
Merged-chr12-84004739-4	chr12	84004615	84004815	+	936.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-4787.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	4.77617361016612	4.42570650891491	4.7396013171789	5.00348371728494	4.86355457210835	4.87420643964631	4.5143141887953	4.77378979306815	-0.00165944462788296	0.996362163685442	0.998602617451138
Merged-chr17-17374560-4	chr17	17374459	17374659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_025934, exon 1 of 10)	5' UTR (NM_025934, exon 1 of 10)	227.0	NM_025934	67045.0	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2	protein-coding	6.52935293269426	6.32105699089712	6.17126953485341	6.31295323283666	6.55666684914544	6.55693242268377	6.4495558633971	5.88968253500398	0.0856598202761284	0.731957454158544	0.893842682027583
Merged-chr8-123360727-3	chr8	123360599	123360799	+	868.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172287, intron 9 of 14)	intron (NM_172287, intron 9 of 14)	-13012.0	NM_001359076	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	3.43269463295667	3.51490645962709	3.433110441727	3.97147249074662	3.71284320077505	3.41984934838829	3.58673399009864	3.59904328877816	-0.127025736715119	0.811529087301741	0.927072821617165
Merged-chr13-60356352-4	chr13	60356282	60356482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150911.0	NR_036449	100503759.0	Mm.38101	NM_177810	ENSMUSG00000050765	Gm5084	A030007L22|EG328264	predicted gene 5084	ncRNA	5.71165631224904	6.43007517629807	5.86453637608756	5.67437936707563	5.99080074904648	6.50983770802825	5.88108552668998	5.47385839406854	0.0920068995149625	0.780147166104575	0.914348108890036
Merged-chr2-35108316-4	chr2	35108212	35108412	+	916.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1180.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	5.15525399535527	4.88887128098973	4.50238435601261	4.37145461390482	4.57767611123566	4.54130909142889	4.64881735471738	4.85098718580666	-0.204576799101381	0.602677849512088	0.827797662188335
Merged-chr11-107242812-3	chr11	107242711	107242911	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 6 of 9)	intron (NR_153311, intron 6 of 9)	-53430.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	3.47841342598825	3.46541392434531	4.30679433450337	3.85120515331115	3.73704522381435	3.3969395663486	3.58188095411462	3.41453313007456	-0.838669364107975	0.133828390016219	0.407290794481133
Merged-chr15-50890078-4	chr15	50889994	50890194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035444)	promoter-TSS (NR_035444)	-53.0	NM_032000	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	5.77491950003529	6.33000368271919	6.20158478406181	6.18440816916481	6.20981647360623	6.14935659291118	6.36219804629866	5.6017829293537	-0.0447658316750887	0.871233291541543	0.951579960696581
Merged-chr7-129526218-3	chr7	129526126	129526326	+	928.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65637.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	4.48608735163918	4.17954631449335	4.81655752088566	4.00455345805992	4.16275812046513	4.41198786108345	4.07458329260851	3.80601193176425	-0.658949213486229	0.158923810090938	0.446094511738734
Merged-chr11-99311033-2	chr11	99310956	99311156	+	779.416687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	11885.0	NM_133730	70810.0	Mm.268173	NM_133730	ENSMUSG00000035831	Krt25	4631426H08Rik|Ka38|Krt25a|mIRSa1	keratin 25	protein-coding	2.71252512887776	2.82954387691744	2.91781730593155	2.8106550934988	3.08112348823435	3.1499185515841	3.02873460893765	3.34250379924692	1.44271902561939	0.0149086486059563	0.104375204005446
Merged-chr14-21973337-3	chr14	21973239	21973439	+	871.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER63A|DNA|hAT-Blackjack	16262.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	3.12824353217249	2.98174946414339	3.64875874383696	3.49475634227965	3.7356738211368	3.50041963648468	3.58471954446605	3.44068227305499	0.749877212507395	0.197323159942563	0.498730968749601
Merged-chr11-22872037-4	chr11	22871929	22872129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11693.0	NM_001169114	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	5.94383606261612	6.40988837008192	6.34658936982407	6.62199343948895	6.24334868684664	6.1224211458677	5.6835862516313	5.8425169538927	-0.561035266877825	0.0409713870190568	0.204695890828206
Merged-chr10-60933648-4	chr10	60933557	60933757	+	909.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033616, intron 1 of 2)	intron (NR_033616, intron 1 of 2)	4475.0	NR_033616	73616.0	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	4.39433068307229	4.17383281181752	4.43912229798391	4.55226133876125	4.48272331208915	4.52490544557	4.61738121737628	4.84066029838103	0.474201663872282	0.206227916769885	0.510210725476936
Merged-chr1-180698270-3	chr1	180698159	180698359	+	955.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1225.0	NM_013729	27217.0	Mm.103647	NM_013729	ENSMUSG00000026497	Mixl1	Mm1|Mml	Mix1 homeobox-like 1 (Xenopus laevis)	protein-coding	3.82405122784065	3.62722498795698	4.11955955500663	3.82647124409889	3.32521768225035	3.49043092558098	3.65848605624545	3.61677821912746	-1.05548643940838	0.035977589674824	0.188408538512677
Merged-chr13-45311639-3	chr13	45311473	45311673	+	769.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78169.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	2.25122336927722	2.34418441512225	2.3307288262864	2.36944675890898	2.73250002932872	2.71629810271094	2.65954056560809	2.78290831742468	2.13578736808199	0.00334936228282779	0.0348035413035619
Merged-chr17-83212646-4	chr17	83212538	83212738	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2645.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	5.59168503221167	5.01858147387462	5.49076711539128	5.84904428884324	5.16991709972495	5.19297062162089	5.23235834415979	5.31682277795126	-0.551753819338937	0.0869802035127005	0.321652322622117
Merged-chr14-61696567-4	chr14	61696482	61696682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14209.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	6.37601526884031	6.32757595656762	6.55515401416725	6.48588911871244	6.04189636474128	6.61971109290738	5.96344349488228	5.91718359281556	-0.420971632146473	0.0993975282732237	0.345736960675995
Merged-chr10-80684408-4	chr10	80684313	80684513	+	868.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172457)	TTS (NM_172457)	-8120.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	4.47629616574136	4.02578347189364	3.52600410029313	4.00845427973252	4.18340050627596	4.18701849729592	4.13772634562949	4.3632249545171	0.433076365669158	0.359333586428121	0.665266442591906
Merged-chr10-80824075-4	chr10	80823941	80824141	+	925.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2615.0	NM_001301034	18245.0	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	4.21432599045072	4.23917662923522	4.01378949431936	4.32551362481224	4.3205583676396	4.47580860222663	4.14976396694912	4.50241962723738	0.367788796740346	0.353175989552668	0.660101709258846
Merged-chr15-64100655-4	chr15	64100553	64100753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 25 of 28)	intron (NM_001276461, intron 25 of 28)	-40205.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	7.66565058699196	7.69602641466958	7.37041441778275	7.76605598863091	7.42024900145721	7.78500488060303	7.61288102034976	7.50367480581332	-0.0773669475977674	0.679622739062497	0.868562901473288
Merged-chr19-32947315-3	chr19	32947216	32947416	+	734.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	189739.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	4.0861348319291	3.63399562665687	3.87735627064783	3.64945290865003	3.81250726595774	3.62656758482145	3.37189206524314	3.50800585035519	-0.669770163998396	0.190937690369586	0.490311892807621
Merged-chr16-30465017-4	chr16	30464944	30465144	+	956.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-76514.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	4.81211918461541	4.73756892459019	4.96206157509721	4.20834514899936	5.39562403462644	5.06622634035137	5.1901495875364	5.29637499187373	1.10727836369881	0.0018696296200673	0.0221871234956269
Merged-chr5-120711668-3	chr5	120711548	120711748	+	859.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008052)	promoter-TSS (NM_008052)	21.0	NM_008052	14357.0	Mm.1645	NM_008052	ENSMUSG00000029603	Dtx1	Fxit1|mKIAA4160	deltex 1, E3 ubiquitin ligase	protein-coding	3.22366970860888	3.3428034800804	3.28075098180696	3.2009548555199	3.09426321165749	3.44717539376524	3.1537375465472	3.03712660814053	-0.277850017605861	0.616723384906527	0.835150401688917
Merged-chr3-51341846-2	chr3	51341756	51341956	+	901.666626	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-1212.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	4.18399045089369	4.42362256414106	4.59151551198726	4.29592463936005	4.68198479237178	4.20334119788576	4.21828816080136	5.26100897735968	0.635911638238965	0.155330636394042	0.440979076070846
Merged-chr14-66241930-4	chr14	66241828	66242028	+	782.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-28104.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	4.16792990514775	4.0462673062473	4.01355523478059	4.03284814425679	4.66893638067032	4.34396919274332	4.48766262024828	4.50622603806436	1.08895955391184	0.00427515219626505	0.0422522991082963
Merged-chr4-132491949-4	chr4	132491843	132492043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_144907)	TTS (NM_144907)	18513.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	5.7891621257842	5.42199604728005	6.30234039880854	6.25707008574977	5.59231304643249	5.57500231309265	5.89795120059536	5.68488759723849	-0.497329044962741	0.105340304095882	0.357150495629264
Merged-chr2-37443254-4	chr2	37443086	37443286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146121)	promoter-TSS (NM_146121)	-65.0	NM_199025	320633.0	Mm.383299	NM_199025	ENSMUSG00000050714	Zbtb26	A630026F21Rik	zinc finger and BTB domain containing 26	protein-coding	7.51074015195127	7.5329093757452	7.22664474242651	7.42580521185837	7.65861573480451	7.57475593088606	7.58780825327169	7.24426703647348	0.132006984546557	0.483118576266457	0.757626234111131
Merged-chr4-46374605-3	chr4	46374483	46374683	+	712.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	14840.0	NM_029086	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	3.63948635264419	3.87131172888045	3.78213375652623	3.13804020890433	3.2699045175747	3.34687999116506	3.34947497656572	3.53365816005215	-0.85429462520665	0.132178251519867	0.404721546823047
Merged-chr13-24037717-3	chr13	24037603	24037803	+	944.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026825, intron 33 of 37)	intron (NM_026825, intron 33 of 37)	-46489.0	NM_145399	214189.0	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	3.58263457951088	3.69024656998216	4.02090822960487	4.20067804519286	3.3827815571801	3.64081565372018	3.56963974829942	3.63780003337067	-1.09054039556224	0.0334687319110043	0.179997798919031
Merged-chr19-38043897-3	chr19	38043789	38043989	+	767.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099634)	promoter-TSS (NM_001099634)	-312.0	NM_001302140	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	3.65237552241198	3.95093770965212	3.81578381819627	3.50956818161068	4.16597030363157	3.93666733116553	3.63907172118903	3.8635496565482	0.542499292025741	0.255270589659847	0.566852976271238
Merged-chr9-70014041-2	chr9	70013941	70014141	+	719.233337	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282083, intron 1 of 4)	intron (NM_001282083, intron 1 of 4)	1493.0	NR_104093	235459.0	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	3.04393200220617	2.95912275019301	3.04425148874523	3.54162276023732	3.46984859997639	3.28131098827215	3.21801947308964	3.2846138986579	0.477984106426496	0.436973506294835	0.725408654678613
Merged-chr13-56421400-1	chr13	56421300	56421500	+	662.0	f0_balb.idr	Intergenic	L1MD1|LINE|L1	-16955.0	NM_177809	328258.0	Mm.482177	NM_177809	ENSMUSG00000021509	Slc25a48	AU042651|E230025K15	solute carrier family 25, member 48	protein-coding	3.20707138389899	3.19949334680984	2.99141243603739	3.31128000902623	2.6873762528229	2.60260660672575	2.57518487988562	2.80032549672326	-2.64563783340209	0.000387765056279408	0.00627289294111636
Merged-chr17-77969404-4	chr17	77969301	77969501	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	-230847.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	4.67065627155585	5.02899060176727	5.07299940498402	4.95209938703852	4.82383018229532	5.18033816247341	4.95126646500534	4.66842124030592	-0.0568051870012118	0.866169424634977	0.949861736890724
Merged-chr8-120816556-4	chr8	120816441	120816641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	77902.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	5.74266623680646	5.81042981257692	5.64785739962502	5.32206170928548	5.18939152816467	5.6069668784629	5.56872603927852	5.3974634662395	-0.32646532393123	0.271861120446998	0.583453014903723
Merged-chr2-120563231-5	chr2	120563168	120563368	+	796.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011743, intron 1 of 21)	intron (NM_011743, intron 1 of 21)	591.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	3.52858454670514	3.55107782386891	3.63953830999179	3.47559299735606	3.74977960649723	3.64509789169249	3.72541757107831	3.78702292153188	0.58249599273864	0.207360277497562	0.511353145509943
Merged-chr9-88960197-4	chr9	88960091	88960291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009742, intron 1 of 1)	intron (NM_009742, intron 1 of 1)	3271.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	5.48560126443313	6.08216415923871	5.62551182255167	4.31023525754577	5.76666099827153	6.16323274683309	5.8558717113405	5.51164037746636	0.495975396466418	0.408495861107961	0.70438176546703
Merged-chr6-50455947-4	chr6	50455884	50456084	+	938.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347213, exon 1 of 24)	5' UTR (NM_001347213, exon 1 of 24)	186.0	NM_001163645	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	4.24224432418879	4.06569422687452	4.55365551962635	4.35953209829629	3.8851971944127	3.76116494983983	3.98507652439483	4.58435621235907	-0.556092319573327	0.23665958877697	0.546655618028751
Merged-chr18-80373086-4	chr18	80372987	80373187	+	942.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8833.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	4.74041154091565	4.16407323542533	5.01703590781842	4.77875765044569	4.34382276628759	4.47148717964938	4.22570677044154	4.18987962857426	-0.90225460175883	0.029149125413693	0.164135894521787
Merged-chr5-21030405-4	chr5	21030287	21030487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	intron (NM_011203, intron 1 of 17)	4860.0	NM_001356592	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	6.63627515248647	6.64629165537151	6.76455664671504	6.97150873080332	6.22054503733247	6.04372924525328	6.37697843039568	6.21332153919086	-0.812197216236734	0.000295089143051365	0.00500337067966963
Merged-chr5-147046484-3	chr5	147046388	147046588	+	989.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	30084.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	4.80037643513857	3.66850493165196	4.30380993659925	5.02710460937601	3.38878618145961	3.38016695529403	3.61687315326051	3.75601490012764	-2.88197678399686	1.7768943665723e-06	5.88267740084883e-05
Merged-chr5-72796477-4	chr5	72796386	72796586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	-43709.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	6.54240583083832	6.33605180922185	6.39089016515383	6.82188790421267	6.47384943433646	6.61991835423707	6.5101163029784	6.1491566141984	-0.15156470716914	0.528837736759547	0.785320670621494
Merged-chr1-39900771-4	chr1	39900671	39900871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252201)	promoter-TSS (NM_001252201)	-142.0	NM_001252202	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	6.16829430027017	6.61206692949806	6.54774965758018	6.66068376608524	6.65648320735843	6.74011416698305	6.723601048009	6.62222676871785	0.231266901871545	0.291241644383616	0.603554575525704
Merged-chr5-137757405-4	chr5	137757314	137757514	+	824.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023910, intron 3 of 4)	intron (NM_023910, intron 3 of 4)	11445.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	3.71798576582085	3.8062797246983	3.77219114202718	3.72625531146059	4.11230023550507	3.72106133244453	3.94952822994501	3.82155710933563	0.473862886212535	0.288438973848274	0.600421059821791
Merged-chr17-83215770-7	chr17	83215706	83215906	+	947.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134117, exon 1 of 7)	exon (NM_134117, exon 1 of 7)	523.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	3.55757572380141	3.32515362551843	3.90185709959044	3.36526986370273	3.50683183728721	3.88689179108287	3.54401100113034	3.71459499193723	0.375623008891241	0.467630814467317	0.747048517438036
Merged-chr12-3740321-4	chr12	3740247	3740447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-66633.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	4.85235673133289	5.69865141029354	5.31285469556467	5.10743867613699	5.16909412577782	5.39533229398031	5.31553232225378	5.36719962461066	0.0562818840529813	0.864338171383728	0.949131852837433
Merged-chr13-67609691-4	chr13	67609606	67609806	+	995.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163246)	promoter-TSS (NM_001163246)	1.0	NM_001163246	100416706.0	Mm.478045	NM_001163246	ENSMUSG00000058093	Zfp729b	AA987127	zinc finger protein 729b	protein-coding	6.40693736519581	6.18693180607105	5.74298669672611	5.81809321666803	7.67058440782651	7.50749113924951	7.50636410660562	7.40611445319139	2.08129640059419	1.94465459412131e-20	6.92092846774803e-18
Merged-chr10-5194886-6	chr10	5194789	5194989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001079686)	promoter-TSS (NM_001079686)	-182.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	5.74178334819391	5.51967011753233	6.20263322406553	6.02173126593866	5.59469111857615	5.91856622537155	5.63614099632895	5.92587248847523	-0.211200956243092	0.456815008948214	0.740135562276358
Merged-chr6-34374033-4	chr6	34373933	34374133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10214.0	NM_172398	67861.0	Mm.70371	NM_172398	ENSMUSG00000061758	Akr1b10	2310005E10Rik|Akr1b16	aldo-keto reductase family 1, member B10 (aldose reductase)	protein-coding	5.41611907075327	5.35022798613061	5.3233571142819	5.84165302398446	5.85343421529349	5.56303005942269	5.63407501706414	5.58210095378901	0.244489627320086	0.408962855548417	0.70476365964588
Merged-chr11-118494265-4	chr11	118494165	118494365	+	925.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 13 of 14)	intron (NM_001024931, intron 13 of 14)	17433.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	4.39525504897987	4.0913670405265	4.68737066776514	4.09638263997618	4.30472255457994	4.1428511108334	4.05437180595067	4.54711829727545	-0.12508862900107	0.771652914697045	0.910432508664506
Merged-chr10-128149805-4	chr10	128149706	128149906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039080, intron 3 of 13)	intron (NM_001039080, intron 3 of 13)	26762.0	NM_019711	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	6.02671899038802	6.02003691344427	6.3697325477072	6.11452977587277	5.56873359442836	5.57989468362942	6.13319621654961	5.42738669660446	-0.693396491921709	0.0136135686869007	0.09810907653439
Merged-chr12-69159223-4	chr12	69159125	69159325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009093)	promoter-TSS (NM_009093)	-39.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	8.74033742242117	8.8375835926262	8.83062406788274	8.3729564033654	8.85445109668627	8.94462819633709	8.65084895155872	8.69789124932654	0.112660460731444	0.517631381831293	0.778953152798512
Merged-chr7-110286983-4	chr7	110286830	110287030	+	788.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65227.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	3.18873747257205	3.36879921885379	3.30646727706844	2.98156775958513	3.30584750404716	3.47618506301256	3.29346209986364	3.12482675690944	0.351487790678582	0.526095938974425	0.78354081938945
Merged-chr2-119289283-4	chr2	119289183	119289383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172269, intron 1 of 4)	intron (NM_172269, intron 1 of 4)	541.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	6.60728849622727	6.3616305809879	5.99787811539459	6.28656824524209	6.18086457338727	6.03020092076947	6.13889657438774	6.2441791642307	-0.26728210835427	0.268910584584577	0.580490538993026
Merged-chr18-64598139-3	chr18	64598041	64598241	+	940.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001488, intron 2 of 27)	intron (NM_001001488, intron 2 of 27)	62859.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	4.03904395009082	4.0450794360976	3.87427070094882	4.08591467678003	2.95513476545593	3.23744527915852	3.11078270022457	3.03959036441695	-4.09688198652853	6.11094502062315e-08	2.73566638756563e-06
Merged-chr17-28217816-4	chr17	28217723	28217923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027185, intron 3 of 10)	intron (NM_027185, intron 3 of 10)	10045.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	5.05783106910135	5.20254111764551	4.98961124239052	5.19932929200603	4.89753814711764	5.01616710094899	5.16086420141353	5.12067962862204	-0.150305621420197	0.624705256173755	0.839581122865294
Merged-chr14-31160686-4	chr14	31160594	31160794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 11 of 68)	intron (NM_138672, intron 11 of 68)	7947.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	7.83542976627747	8.06635132089136	7.92341289146935	7.77252858173587	7.80629169204447	7.67259579232408	7.98549215019641	7.4597885622428	-0.199426811498682	0.285548683640161	0.597304271565271
Merged-chr1-6410152-3	chr1	6410046	6410246	+	763.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50815.0	NM_001195732	620393.0	Mm.388992	NM_001195732	ENSMUSG00000087247	Alkal1	EG620393|Fam150a	ALK and LTK ligand 1	protein-coding	3.46083179383853	3.13855400035009	3.46132514086243	3.62602307431392	3.06108764724558	3.15661259641328	3.17004146061802	3.50836048663173	-0.77348581984611	0.180495803509301	0.476893733388927
Merged-chr5-117147396-3	chr5	117147302	117147502	+	928.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	13814.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	4.70862120714399	4.39812092331971	4.25303269551475	4.72549866124135	3.56368057291704	3.516536536322	3.45926113058111	3.8009313110934	-2.7880020679326	6.28998308621759e-08	2.81227830460981e-06
Merged-chr7-80024380-6	chr7	80024284	80024484	+	991.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146000)	promoter-TSS (NM_001146000)	-430.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	4.8065434329566	4.08339153175248	4.61865044132237	4.98302477979058	4.58790595354347	4.8322222469538	4.51405618535775	4.9368979405433	0.104075198372726	0.800680830969639	0.923103471519366
Merged-chr2-66132104-3	chr2	66131996	66132196	+	961.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7303.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	4.04885876464715	4.03659065240135	4.90797318052194	5.03046248009363	4.03198089991957	4.23170660935167	4.23532939277813	4.25154674356734	-0.955173819532936	0.0466968439442925	0.222151761469776
Merged-chr17-63430613-3	chr17	63430537	63430737	+	784.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 4 of 8)	MTEa|LTR|ERVL-MaLR	69943.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	3.55616220889326	3.69226741931165	4.05818761889419	3.81148082436521	3.30650837287866	3.61645360604924	3.36590006418606	3.37580659599009	-1.24149556899346	0.0168181629474757	0.113695509586701
Merged-chr17-31277367-4	chr17	31277261	31277461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025290)	promoter-TSS (NM_025290)	-5.0	NM_025290	22092.0	Mm.12743	NM_025290	ENSMUSG00000024033	Rsph1	MCA|Tsga2	radial spoke head 1 homolog (Chlamydomonas)	protein-coding	5.9733828238362	6.23764331070088	5.64879599033216	5.74594827308536	6.16331834886165	6.31422357091029	6.23643277965238	5.58657787671268	0.293092720570729	0.306907665535743	0.619270345990721
Merged-chr1-35975895-3	chr1	35975805	35976005	+	844.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-92495.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	3.69158108878071	3.41099210097672	3.6423562238316	3.79372269361388	3.45855127558616	3.40785254451428	3.40928009687127	3.73771902925534	-0.45032435783666	0.374610941741095	0.677891254741963
Merged-chr5-113986033-4	chr5	113985944	113986144	+	903.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198109, intron 2 of 14)	intron (NM_198109, intron 2 of 14)	7713.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	3.39710028939759	3.4957723558201	3.78308382054304	3.49041597553519	3.55434953767024	3.99696417743895	3.71848454223964	3.57483222847383	0.535945153245777	0.277639843777382	0.589700641340894
Merged-chr11-106561046-4	chr11	106560958	106561158	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198292, intron 2 of 11)	intron (NM_198292, intron 2 of 11)	51872.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	4.48974284491089	4.64765604818602	4.44929031517448	4.63611136292438	4.55174672631189	4.00630518773973	4.58465028495145	4.21855888864575	-0.437414650945936	0.272779117106236	0.584183037393596
Merged-chr17-53488798-4	chr17	53488688	53488888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025887, intron 2 of 5)	ID_B1|SINE|B4	9554.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	7.17171535912129	7.32697562598926	7.93444356861744	7.81979096163426	7.25228484895601	6.9331766463499	7.58177681312291	7.54544800579224	-0.336626040655278	0.171740067484261	0.465087374685055
Merged-chr13-49169977-3	chr13	49169882	49170082	+	991.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17565.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	4.20824645820253	3.67180683453824	3.62205592697692	3.81313754477538	4.46128630665773	3.80954831440331	4.34907065175546	4.50992476748735	1.20229793535583	0.0110141542141847	0.0845622352293658
Merged-chr1-161976110-2	chr1	161975985	161976185	+	845.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204904, intron 1 of 6)	ORR1F|LTR|ERVL-MaLR	3551.0	NM_001204904	75368.0	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	3.39710997816434	3.27667729159586	3.15500816327034	3.40290528350472	3.36098497666463	3.3941815632576	3.53835511778905	3.50165312596412	0.450339159138621	0.383119141605919	0.685004706866809
Merged-chr19-34290454-4	chr19	34290388	34290588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146708)	promoter-TSS (NM_001146708)	-171.0	NM_007987	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	6.09310020424813	6.62922289143589	6.3386164328778	5.35273296224758	6.4518091329174	6.40723058163353	5.70820989630824	5.64850616624358	-0.106644616194358	0.767601577720685	0.909027746453384
Merged-chr10-87552880-4	chr10	87552775	87552975	+	931.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008777, intron 3 of 12)	intron (NM_008777, intron 3 of 12)	31080.0	NM_008777	18478.0	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	4.70892493095921	4.43506381428946	4.31314180130495	4.3287626726096	4.47080237469751	4.39377759829378	4.2475285670863	4.63666081833673	-0.00240222298531787	0.994987289290551	0.998190746524986
Merged-chr1-193138909-4	chr1	193138753	193138953	+	804.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8583.0	NR_151719	215193.0	Mm.173758	NM_145415	ENSMUSG00000016181	Diexf	AA408296|AW045375|Def	digestive organ expansion factor homolog (zebrafish)	protein-coding	4.21769381435995	3.87770526453176	4.26005236336817	3.96446674274235	4.04367229620463	3.69291561763408	4.31886853451406	4.21566156111118	0.0206422970884758	0.963376994295395	0.986934529029245
Merged-chr2-167740991-4	chr2	167740890	167741090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49813.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	6.34273865187425	6.09224390408016	6.09115365718916	6.45910785291565	6.13790091066168	6.48312046386605	6.22056792973859	6.10813069553078	-0.0445662457699238	0.853997459045529	0.944993161871772
Merged-chr15-100449724-5	chr15	100449685	100449885	+	787.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19226.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	3.49840561415939	3.45940061459302	3.49889285632541	3.33427554437173	3.49013515519756	3.6145411961745	3.25594525221227	3.38622408791475	0.00586883579593861	0.990801118826451	0.996425161706009
Merged-chr16-34690604-4	chr16	34690527	34690727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172824)	promoter-TSS (NM_172824)	11.0	NM_172824	239839.0	Mm.272045	NM_172824	ENSMUSG00000022833	Ccdc14	G630039H03Rik	coiled-coil domain containing 14	protein-coding	7.45340928631783	7.73410476691555	7.7107733863774	7.50519448709911	7.61920969616618	7.77962645755938	7.74281768594501	7.37903921518601	0.0455356685574799	0.805358086013928	0.925171083261684
Merged-chr5-137823413-4	chr5	137823326	137823526	+	824.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001005426)	TTS (NM_001005426)	12852.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	3.97350519660837	4.01835575737223	3.87270786781785	3.70456256736987	4.14548804266471	4.04650817441378	4.0940692854356	3.97173039301364	0.503862710356237	0.236602007352564	0.546593563381525
Merged-chr3-105047036-4	chr3	105046950	105047150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	5903.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	8.45833310994151	8.4287236311031	8.64062311641873	8.41529829993519	8.2251874278144	8.4485418036154	8.36950727606896	8.37679130870657	-0.167214411021437	0.279171119163053	0.591369431345506
Merged-chr4-122997154-3	chr4	122997007	122997207	+	865.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008506, intron 1 of 1)	intron (NM_008506, intron 1 of 1)	1176.0	NM_008506	16918.0	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	2.82475755773002	2.73263284832461	2.88451728248668	2.75359617280907	2.7430674849456	2.80202538774503	2.81501735624269	2.76145118231884	-0.0804496560046065	0.895867913360226	0.960979922829742
Merged-chr7-71379191-3	chr7	71379113	71379313	+	718.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-530482.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	3.04635085618419	2.98268926142342	3.30105339054988	3.17558528385869	2.6429915653007	2.68304925952172	2.7217381614929	2.79795265973363	-2.07824070514272	0.00231227555659745	0.0261537361899014
Merged-chr4-97777293-3	chr4	97777178	97777378	+	913.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122953)	promoter-TSS (NM_001122953)	-348.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	3.68134092818301	3.55068932145633	4.01792117126747	3.86406423419104	3.99708899359903	3.74297020821633	3.66759050965063	3.67984191693734	-0.0142478106706265	0.976228976138273	0.991528225629167
Merged-chr17-71215378-4	chr17	71215256	71215456	+	952.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357791, intron 2 of 19)	intron (NM_001357791, intron 2 of 19)	10702.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	5.39918188856632	5.2163123621057	5.04848811722875	4.94308081230924	5.27774921856521	4.74594052754867	4.6802426313867	5.17338573724066	-0.278819206847577	0.4258651643862	0.717223493053412
Merged-chr4-124738950-4	chr4	124738864	124739064	+	798.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151694, intron 3 of 3)	intron (NR_151694, intron 3 of 3)	-2886.0	NM_008385	16330.0	Mm.296202	NM_008385	ENSMUSG00000028894	Inpp5b	5PTase|AW260155|INPP5P	inositol polyphosphate-5-phosphatase B	protein-coding	4.03492382617083	3.95571327791957	4.12580289140076	3.86650993654211	3.87144082743946	4.06030971593046	3.87132101400982	4.20679968526694	0.0431127690398814	0.92019076648141	0.970412997665404
Merged-chr7-43580018-4	chr7	43579913	43580113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357769, intron 1 of 3)	intron (NM_001357769, intron 1 of 3)	427.0	NM_001357769	210105.0	Mm.234422	NM_172482	ENSMUSG00000030469	Zfp719	8030458J18|9430094P17Rik|C630016O21Rik|mszf6	zinc finger protein 719	protein-coding	6.22619828515127	7.34353762181507	6.09246514167696	5.27970917693223	7.03649875765167	7.5313998507799	7.00160274772781	6.22278506326877	0.782175709406484	0.247695300929051	0.558888728359504
Merged-chr17-56473662-4	chr17	56473563	56473763	+	808.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 1 of 27)	intron (NM_001252455, intron 1 of 27)	2817.0	NM_001252455	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	3.98459179352556	3.90004372914193	3.67392758437845	3.48645880558002	3.7799546248862	3.73427941178193	3.87268873072034	4.37502125207842	0.558494953772437	0.255833005665342	0.567446870158406
Merged-chr1-91455563-1	chr1	91455463	91455663	+	708.0	f0_c57.idr	intron (NM_011066, intron 1 of 22)	intron (NM_011066, intron 1 of 22)	3765.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	3.43841194932242	3.49867805970625	4.06120865052698	3.95781526897152	3.73407001818779	3.62022413043811	3.91410653988446	3.9737942004951	0.123750683227344	0.808234675216106	0.92599571759794
Merged-chr19-6278897-4	chr19	6278829	6279029	+	890.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 1 of 4)	intron (NM_010119, intron 1 of 4)	2033.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	3.80867920692896	3.79198012900063	3.70195586245679	3.54668383750233	4.14416815079578	4.2528469364104	3.51059538789242	3.69991171941966	0.658212019906945	0.182925479786138	0.47971603882166
Merged-chr4-8647399-6	chr4	8647298	8647498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-43008.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	7.78665096584443	7.9741660313008	8.55760364327419	7.73590333576537	7.75618381836711	8.09384612638291	7.73421409198325	7.83705508292979	-0.247899528553161	0.271565604179504	0.583247666197459
Merged-chr2-73513896-3	chr2	73513812	73514012	+	630.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	15575.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	2.99258068621765	2.98638319109675	2.99296743271003	3.17732404715813	2.94506275346157	2.91253219859635	2.66101901756404	2.73808328957564	-0.993176265864845	0.119629133517274	0.382751925860837
Merged-chr5-122925688-4	chr5	122925662	122925862	+	831.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 11 of 22)	intron (NM_001003953, intron 11 of 22)	-25412.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	4.34746683282177	4.2567952877854	3.60613800615967	3.83621393038091	3.57010248609886	3.46509033222276	3.33678550277287	3.60419887031861	-1.65813786595166	0.00215073077911845	0.0247353152572099
Merged-chr7-126554201-4	chr7	126554108	126554308	+	956.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146200, intron 15 of 20)	RSINE1|SINE|B4	12158.0	NM_146200	56347.0	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	5.24330470830519	5.24017882440298	4.76426996793866	5.09700974918271	4.64213791603888	4.67359928906071	5.12992292178287	5.3496087665022	-0.234763889641403	0.516582678291619	0.778279996996913
Merged-chr4-150438799-4	chr4	150438716	150438916	+	704.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 3 of 22)	intron (NM_001085492, intron 3 of 22)	156900.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	3.53068649812102	3.77453605327614	3.97684290118035	3.71394664497743	4.12567305996667	4.00063441336946	4.09228050864842	4.06538620052504	0.884796000952414	0.0428129200015716	0.210396356862183
Merged-chr9-110676814-4	chr9	110676707	110676907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	20304.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	8.20269105149127	8.32396986478741	8.43132661136448	8.32885575071328	7.93122995153847	8.14012528008055	8.0858264639165	8.13157131195919	-0.324879946251989	0.038863820615914	0.198019682909226
Merged-chr9-57440757-3	chr9	57440636	57440836	+	897.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357914)	promoter-TSS (NM_001357914)	-622.0	NM_001357916	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	3.55550081360991	3.1294141407309	3.29413519429165	3.44976035140799	3.12232043497829	3.3468470497031	3.22322502582228	3.40353492580196	-0.346993336018533	0.526582240696711	0.783803651205536
Merged-chr13-95950897-3	chr13	95950735	95950935	+	735.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58913.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.43840918365758	3.65340514688679	3.49336723433153	3.38808134578856	3.16538151689494	3.37309991539304	3.36936020129267	3.59367884989083	-0.399172381278799	0.448040671225202	0.73332468018769
Merged-chr17-33564815-4	chr17	33564720	33564920	+	984.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053214, intron 1 of 27)	intron (NM_053214, intron 1 of 27)	9113.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	5.31051897057988	4.8745932824176	5.07307437871816	5.3232131876325	4.98676995835723	4.82987095761354	4.94678996885487	5.00231418652124	-0.427674678473915	0.184042706262692	0.48125702884897
Merged-chr11-32300739-4	chr11	32300635	32300835	+	725.108337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175000, exon 3 of 3)	exon (NM_175000, exon 3 of 3)	666.0	NM_175000	216635.0	Mm.338482	NM_175000	ENSMUSG00000020295	Hbq1a	A230090E05Rik|Gm876|Hbq1|Hbqt2	hemoglobin, theta 1A	protein-coding	3.68175865081266	3.96303107557266	4.39030544143854	3.7206602584666	4.20391963982186	4.39668231715627	4.33001120367087	4.49909314532435	1.01048548882233	0.0233690481076262	0.141890768169643
Merged-chr18-64758812-3	chr18	64758693	64758893	+	651.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-97793.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	3.50702940697611	3.69934505453558	3.56440962497572	3.25196710436065	3.80352806854549	3.62418079418659	3.6043182550887	3.81416261450718	0.680764295703702	0.167750992484492	0.459695448875569
Merged-chr13-16012451-4	chr13	16012365	16012565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008380, intron 2 of 4)	intron (NM_008380, intron 2 of 4)	614.0	NM_008380	16323.0	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	5.93238532255542	5.65308726529952	5.74985841685821	5.7680392506603	6.01627942590931	5.55949153590068	5.85995736422429	5.66949607320674	0.0407728362334683	0.877224706987713	0.954024926563865
Merged-chr4-136469781-4	chr4	136469685	136469885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024452)	promoter-TSS (NM_024452)	24.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	6.56024185069419	6.61323190451932	6.25209641395892	6.28566174180542	6.39537000603099	6.17229922690175	6.11931745257481	6.39447340594599	-0.22222998231169	0.341622061372269	0.650639445837748
Merged-chr4-55353210-3	chr4	55353121	55353321	+	777.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009011, intron 1 of 9)	intron (NM_009011, intron 1 of 9)	3179.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	3.51778693583864	3.57305004256587	3.27577144025914	3.37050939373781	3.8035799217749	3.5768445961942	3.60944862749597	3.62238432077489	0.730467700566933	0.134893492502101	0.408839148894254
Merged-chr6-54022558-4	chr6	54022448	54022648	+	861.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17384.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	4.09863122847069	4.1686686308771	4.15326798663166	4.01653111561788	4.81593555126757	4.48142677694343	4.9318020558418	4.77149140074259	1.51804693479209	3.86522241223084e-05	0.000903819533771941
Merged-chr11-77816219-4	chr11	77816094	77816294	+	980.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291213, intron 2 of 40)	intron (NM_001291213, intron 2 of 40)	14896.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	5.04566407052603	5.25819431934053	4.51100228561855	5.04646691133427	5.20768552129015	5.22001940499753	5.05500707056905	5.10878359602016	0.285585865988306	0.39302989831587	0.692266411611797
Merged-chr1-61649223-4	chr1	61649125	61649325	+	944.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081050, intron 1 of 22)	intron (NM_001081050, intron 1 of 22)	10401.0	NM_001081050	72823.0	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	5.78845927940581	6.09808178763356	6.15390559467144	6.06082081545787	4.98864509132656	4.56665185025819	5.03382133127752	5.09365289828234	-1.93119703817082	3.58878720966138e-10	2.5142350865796e-08
Merged-chr13-9409215-4	chr13	9409109	9409309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	132684.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	6.65881212381585	6.85985215236502	6.91465257055133	6.96744974939432	6.35720978466815	6.53688944563557	6.16664284885216	5.96004314837937	-0.854602000234262	0.000202527794563511	0.00367560578511885
Merged-chr10-13933514-2	chr10	13933414	13933614	+	821.25	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32561.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	3.29873878563095	3.1210771912363	3.13815857077529	2.83882253230303	4.42310021734331	4.19141796569534	4.71126689337727	4.09903954704269	4.28631675473774	1.37981856625022e-14	2.07640815490749e-12
Merged-chr9-15034204-8	chr9	15034079	15034279	+	874.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019482, intron 1 of 4)	intron (NM_019482, intron 1 of 4)	11299.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	4.1262570070284	4.44132578934686	4.34329506145268	3.93142962058023	4.00517019761188	4.10132526367557	3.79414466068237	4.37954487129671	-0.338349084592015	0.450569100467245	0.735357832948579
Merged-chr16-45561925-3	chr16	45561832	45562032	+	938.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198106, intron 13 of 27)	intron (NM_198106, intron 13 of 27)	26666.0	NM_198106	208169.0	Mm.277437	NM_198106	ENSMUSG00000033210	Slc9c1	Gm610|NHE-10|Slc9a10|sNHE|spermNHE	solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1	protein-coding	3.30865377378421	3.19739926904937	3.39304746202365	2.458696747538	5.0336852623357	4.89986354682275	5.10835740650923	4.78174407063535	8.20937658906599	1.01643426099127e-20	3.82797747423798e-18
Merged-chr3-96697080-4	chr3	96696977	96697177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018812)	promoter-TSS (NM_018812)	1.0	NM_018812	229615.0	Mm.1635	NM_018812	ENSMUSG00000028101	Pias3	Pias3l	protein inhibitor of activated STAT 3	protein-coding	6.97091005428312	7.03689709173448	6.48216214252348	6.82021672971267	6.67897880071725	6.99163621829153	7.05362455099783	6.51328197370778	-0.030895359217868	0.894881764626799	0.96069135232764
Merged-chr6-124864076-2	chr6	124863976	124864176	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355257)	promoter-TSS (NM_001355257)	-93.0	NM_001355257	14788.0	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	3.6714901632184	3.34430579098328	3.41927409845658	3.17949382296904	3.46717682043336	3.53465314756485	3.40589456261019	3.23827690026273	0.0431397336847108	0.935620740670667	0.976639892179174
Merged-chr3-60528415-4	chr3	60528294	60528494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	27215.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	5.97211751098259	5.34683466600448	5.95328349418112	5.71487009161786	5.48265519597764	5.52427622015152	5.44221908207882	5.5510962466166	-0.443956987135502	0.120184166154396	0.383785947182763
Merged-chr3-66978865-3	chr3	66978785	66978985	+	759.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302358)	promoter-TSS (NM_001302358)	-74.0	NM_001302358	20429.0	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding	3.23346095924722	3.40842991421917	3.34877376669068	3.70107670785481	3.22424953654714	3.07606823280585	3.22257427633705	3.29090079564668	-0.886770142288561	0.115105515443562	0.375422103710937
Merged-chr1-173451863-4	chr1	173451775	173451975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 2 of 8)	intron (NM_001013779, intron 2 of 8)	31271.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	7.11312856009787	6.8030616117079	7.23277663672253	7.48958188331438	6.61651656478119	6.3258567121558	7.07848528397433	6.86044913876746	-0.612760211269154	0.0146623363941787	0.103147899011785
Merged-chr10-77515853-4	chr10	77515732	77515932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133998)	promoter-TSS (NM_133998)	-19.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	8.07636382619369	8.21869884358392	7.80154934195898	7.95362564578268	7.96879686472815	8.12829595991457	8.05180046068765	7.73126418092504	-0.0567064161079645	0.753189476095003	0.902774669006756
Merged-chr7-105778607-4	chr7	105778489	105778689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162943, intron 1 of 20)	intron (NM_001162943, intron 1 of 20)	8961.0	NM_001162943	233651.0	Mm.334108	NM_001162943	ENSMUSG00000036862	Dchs1	3110041P15Rik|C130033F22Rik|CDH25|FIB1|Gm165|PCDH16	dachsous cadherin related 1	protein-coding	5.98429960255718	5.56313011093715	5.64775517779032	6.00842708380497	5.59868944318024	5.53753654733234	5.26690898603685	5.6176947062272	-0.519948227570229	0.0658974084968146	0.273323537540741
Merged-chr9-21221713-4	chr9	21221619	21221819	+	916.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	17613.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	4.75411099831283	5.00288908013366	4.42866397900174	4.39213270899437	4.63298758254652	4.77564365047407	4.53998289429572	4.59912245799096	-0.048395476431907	0.898074739742973	0.96198738751189
Merged-chr6-86503692-4	chr6	86503590	86503790	+	977.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15463.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	4.51602904892965	4.46371703758916	4.5167462430812	4.41412303804389	4.59401425669869	4.27085504347787	4.53539831963459	4.62954010698413	0.109465491610791	0.762932892093449	0.907015239695587
Merged-chr10-81129127-4	chr10	81129003	81129203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7168.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	5.70414751598496	6.39787140234429	5.51523166874602	4.62452477180636	5.88523374796641	6.19074231438787	5.57138177114389	5.45154274542319	0.131094279985338	0.828995093856347	0.934333879868872
Merged-chr16-90215397-4	chr16	90215301	90215501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5341.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	7.55338475832639	7.80020283130345	7.50901858522632	7.64642808285827	7.45542532799321	7.42965496426405	7.66087613135815	7.4756451794457	-0.16895750013071	0.33805618681489	0.647781761732005
Merged-chr9-44772909-4	chr9	44772820	44773020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023831)	promoter-TSS (NM_023831)	-89.0	NM_023831	76568.0	Mm.278597	NM_023831	ENSMUSG00000002031	Ift46	1500035H01Rik|AA408110|AI663846|R75047|c11orf2	intraflagellar transport 46	protein-coding	7.25308257663096	7.2383445381892	6.77292016256989	6.54042836258582	7.20892001008488	7.09220535759489	7.22817828272035	6.79781710889611	0.163144399114693	0.503956044160645	0.770592637321386
Merged-chr13-52602248-4	chr13	52602129	52602329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	Tigger17a|DNA|TcMar-Tigger	5347.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	6.11281834732121	6.80779165954977	6.5721926628958	6.02498923088297	6.37969080166728	6.20395874274977	6.22244879866035	5.65579824951327	-0.40174985315229	0.176856721513461	0.472097677877616
Merged-chr5-38503163-4	chr5	38503060	38503260	+	867.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1008.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	3.97910402631037	4.15648716876871	4.17429032074671	4.11163100122075	4.13129758954175	4.04879452370955	4.01437607732767	4.52324406727457	0.220988798556232	0.59651044752949	0.824763084775344
Merged-chr15-59649224-4	chr15	59649144	59649344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144549, exon 1 of 3)	exon (NM_144549, exon 1 of 3)	590.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	5.72644815575226	5.76524530380725	5.51233542421295	5.57200016107656	5.74330136104698	5.82611617357079	5.85960656718842	5.77187580738739	0.25615664398628	0.312009718877989	0.623887961907363
Merged-chr2-12923984-4	chr2	12923877	12924077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305436)	promoter-TSS (NM_001305436)	-64.0	NM_008961	19212.0	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	7.58964882646537	7.6488020465642	7.61740017144784	7.85526433289434	7.80938771130607	7.6659693305684	7.81751425043022	7.68020679644137	0.0727515901422562	0.67186382096484	0.864972415577636
Merged-chr7-101321501-4	chr7	101321382	101321582	+	725.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019990, intron 1 of 6)	CpG	369.0	NM_019990	56018.0	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	3.58259630440164	3.4018072224751	3.42128159663144	3.44404422899534	3.52023652665488	3.53511953089052	3.51732898199284	3.47565644279961	0.170065869796127	0.727071429559593	0.89133085313418
Merged-chr4-149056042-4	chr4	149055949	149056149	+	889.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019781, intron 2 of 8)	intron (NM_019781, intron 2 of 8)	43763.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	6.04680004609142	5.75076982563246	6.04790890244227	6.5736487324624	4.53989494645425	4.69589198461974	4.78265081555898	4.80249476294721	-2.66376144911594	6.26111213906225e-15	9.99429628876964e-13
Merged-chr7-73594648-4	chr7	73594531	73594731	+	866.104126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36236.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	4.07295181771707	4.07620882131327	4.07354838516655	3.96559365298162	4.31689229527002	4.14764092719894	4.10330922753355	4.29271917257062	0.469091944958678	0.238815331780417	0.549192230129046
Merged-chr9-121857765-4	chr9	121857669	121857869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357839)	promoter-TSS (NM_001357839)	27.0	NM_001357841	56295.0	Mm.347915	NM_019814	ENSMUSG00000038412	Higd1a	2210020B17Rik|7420700H20Rik|AI303276|AW049839|HIMP1|Hig1	HIG1 domain family, member 1A	protein-coding	7.73642402091441	7.52775225553829	8.17894582946824	7.44404413631514	7.62851118754853	7.92317513008395	7.83626557079976	7.78735309864983	0.0640980588338029	0.763679566469473	0.90733001599047
Merged-chr2-91710904-4	chr2	91710804	91711004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145528)	promoter-TSS (NM_145528)	52.0	NM_001356518	241547.0	Mm.130331	NM_178724	ENSMUSG00000027243	Harbi1	D230010M03Rik	harbinger transposase derived 1	protein-coding	6.41030173071432	6.27467025197732	6.20748722867502	6.04093139020934	6.27558425677424	6.44263367328234	6.638896354325	6.38962652727027	0.317099609263735	0.170080514186502	0.46307659016619
Merged-chr14-25401728-4	chr14	25401612	25401812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57473.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	6.05319789445752	7.16739702663019	6.47908915461897	5.47926210828718	5.90648944403758	5.81787040542195	5.79422649686917	5.06027372836296	-1.1878116379357	0.0504598210647235	0.233062116369474
Merged-chr14-50997292-4	chr14	50997146	50997346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10505.0	NM_001162863	75019.0	Mm.318775	NM_029145	ENSMUSG00000021872	Rnase10	4930474F22Rik|Rah1	ribonuclease, RNase A family, 10 (non-active)	protein-coding	6.05584718083365	5.90359881057492	5.55386195279086	5.76668116138589	5.71849806411751	5.48660674483019	5.73153800756014	5.26875412068256	-0.427593634393922	0.131204923900871	0.403222454917321
Merged-chr1-134361953-4	chr1	134361876	134362076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020588)	promoter-TSS (NM_020588)	23.0	NM_020588	57439.0	Mm.393140	NM_020588	ENSMUSG00000042305	Tmem183a	1300007B12Rik|1700020N19Rik|Tmem183	transmembrane protein 183A	protein-coding	7.57042836778677	7.41081491677469	6.96666574203793	7.26334937396238	7.38435535501816	7.65988078457003	7.55980196851033	7.3316439807718	0.223515492639611	0.271616660937017	0.583248237956304
Merged-chr2-52884407-4	chr2	52884269	52884469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	MTD|LTR|ERVL-MaLR	26501.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	5.90960225611974	5.50583450996098	5.72998726496255	5.89054994745036	5.6540450768869	5.37568602398694	5.51955658665847	5.77354929528006	-0.301409263248164	0.27237408802239	0.583838924250549
Merged-chr11-113738102-4	chr11	113738001	113738201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163346, intron 1 of 1)	intron (NM_001163346, intron 1 of 1)	13059.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	5.88879956511741	5.6120858865937	5.72168869004717	5.76597292343288	5.83785915196052	5.89747010612332	6.10279342702014	5.81636027560849	0.268830628065014	0.283306393751175	0.595360804251864
Merged-chr1-55667147-4	chr1	55667036	55667236	+	937.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	261190.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	3.95264976369821	4.21619398510614	4.01106156299841	4.45136236248521	4.73053423791983	4.48779772775751	4.50071211109617	4.59340080694685	0.898665954369521	0.0294987234201808	0.165381981279541
Merged-chr11-106366521-2	chr11	106366421	106366621	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8305.0	NM_029345	75573.0	Mm.159539	NM_029345	ENSMUSG00000009210	Prr29	2310007L24Rik	proline rich 29	protein-coding	3.30959798888151	3.24570566786578	3.18717878575984	3.03052280507668	3.5977701984506	3.29983211108448	3.40837997693053	3.61875515289064	1.09693254557316	0.0369030123440688	0.191354230031214
Merged-chr3-137953359-4	chr3	137953260	137953460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	28189.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	6.23970176210012	6.43347250076416	6.41182017357033	6.78355827646692	6.52132764681765	6.53397975339328	6.67663418902343	6.31516178601373	0.0224587710376426	0.92457757114576	0.972099190228437
Merged-chr10-78352445-4	chr10	78352373	78352573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053014)	promoter-TSS (NM_053014)	-773.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	5.98462006665502	5.70165550065873	5.56060908647775	5.82356599189039	5.42640485216141	5.68017082104133	5.93491405738393	5.49935365759293	-0.226015892618715	0.417510205565138	0.711296288222139
Merged-chr13-20562455-4	chr13	20562353	20562553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198093, intron 1 of 6)	MIR3|SINE|MIR	89463.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	6.74026765896758	6.91939459628073	6.50756553770417	6.65189264935868	6.07772238818207	6.27126794990776	5.99297164268129	5.81627544113864	-0.992258961007859	2.55317741189161e-05	0.000631016024309142
Merged-chr16-8768728-3	chr16	8768595	8768795	+	996.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30353.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	4.25477591055242	3.92207104948111	4.21648383673555	4.0230726447738	3.99216270114904	3.53562758710902	3.88685930007539	3.73915470935885	-0.822298017163549	0.0788618586863667	0.303929244034701
Merged-chr4-152008224-3	chr4	152008133	152008333	+	794.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033352)	promoter-TSS (NM_001033352)	-658.0	NM_001033352	242785.0	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	2.80322211256907	2.71278711388506	2.86221219753236	2.85193498252163	2.82190273938327	2.71142291636803	2.66931389859597	2.67614623707371	-0.408630322250488	0.519225043214679	0.779936463670941
Merged-chr9-22096241-4	chr9	22096124	22096324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3029.0	NM_009922	12797.0	Mm.4356	NM_009922	ENSMUSG00000001349	Cnn1	CN|CnnI	calponin 1	protein-coding	7.45538245920105	7.51771259495197	7.38861597820276	7.37371484677625	7.35442930512633	7.26308785392902	7.63533278596767	7.49790524761443	0.015590576708247	0.931309875022443	0.975279137937273
Merged-chr5-147861123-4	chr5	147861015	147861215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025624, intron 1 of 5)	intron (NM_025624, intron 1 of 5)	487.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	5.24140124261562	4.94413590510271	5.14528439849872	5.23869514524145	5.38972554125936	5.06590328891103	5.56466184604675	5.46575115567338	0.425590348874855	0.158664291496924	0.445698946464325
Merged-chr15-84985943-4	chr15	84985833	84986033	+	967.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	2038.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	4.83832433050816	4.94938061560681	4.94477917299688	5.11755993817403	4.59594309331588	4.77504939572257	4.98607025485706	4.68008453924807	-0.443290135932813	0.186620315512037	0.484625049457725
Merged-chr4-10952567-4	chr4	10952451	10952651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	55068.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	7.01347416296815	7.06249131713683	6.44577259509678	6.80878878962015	6.83803837052309	6.88753374500136	6.48415876484188	6.54715337601974	-0.21396608112423	0.360600380322917	0.665919212407671
Merged-chr6-70855725-4	chr6	70855596	70855796	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313918, intron 1 of 2)	L2|LINE|L2	11181.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	5.41759399226544	5.25885389564992	5.19102789430882	5.35085676157905	4.98209240289542	5.05234965806889	4.76992411895154	5.18745052358672	-0.57641759391654	0.0600677962043568	0.258670558777295
Merged-chr12-108178456-4	chr12	108178364	108178564	+	949.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028262, intron 1 of 12)	CpG	820.0	NM_028262	52690.0	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	4.22652689825015	4.12870904978015	4.08954582252292	4.06968124319448	4.25007286533166	3.9431012662841	4.40662471428231	4.13458681045995	0.188213844993294	0.644095057404705	0.850082962136934
Merged-chr2-45113082-4	chr2	45112977	45113177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355289, exon 2 of 11)	5' UTR (NM_001355289, exon 2 of 11)	175.0	NM_001355290	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	5.71095086373025	6.32259070628229	5.49016097657604	5.12418405768371	5.64439495565279	6.15941620466328	5.78010197730449	5.73306473920582	0.171243157065437	0.622588013704037	0.838524706757737
Merged-chr1-185363764-4	chr1	185363670	185363870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357474, intron 1 of 32)	intron (NM_001357474, intron 1 of 32)	726.0	NM_001357474	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	5.61777172558014	6.08273751098361	5.98799275454557	5.56879063240456	5.95004763835286	5.85229157555314	6.20659580454697	6.02566741483122	0.307064740223478	0.253275779569462	0.564589794055142
Merged-chr2-157368220-2	chr2	157368120	157368320	+	968.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026968, intron 1 of 2)	MER44B|DNA|TcMar-Tigger	626.0	NM_026968	69161.0	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	3.50166968812156	3.27315932281886	3.2288217150511	3.15437354986761	3.47745059739557	2.99207959263742	3.43752682102507	3.39782277389471	0.1992401152299	0.72228991155262	0.889145957666795
Merged-chr6-119395741-6	chr6	119395622	119395822	+	975.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	intron (NM_197985, intron 1 of 7)	-6988.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	4.07334394667429	3.73313321766757	3.97967799072566	3.91857451666726	4.12997488188443	4.32963754493953	3.75336981764097	3.97730832810879	0.365156395756646	0.41093898239517	0.706273206869081
Merged-chr11-96318602-4	chr11	96318476	96318676	+	973.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010459, exon 1 of 2)	5' UTR (NM_010459, exon 1 of 2)	309.0	NM_010459	15412.0	Mm.3546	NM_010459	ENSMUSG00000038692	Hoxb4	Hox-2.6	homeobox B4	protein-coding	4.66210719391528	4.73549541734101	4.53175463514315	4.78849589869106	4.90157920674545	4.99206070437286	5.05870815120369	4.92184393462424	0.552267171683556	0.0919523260983188	0.331623169614429
Merged-chr10-62549930-4	chr10	62549832	62550032	+	967.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22487.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	4.71375194958076	5.40120756949841	4.96384732135945	4.71401930221081	5.50438052418231	5.46916254652575	5.4066198130108	5.26269017408773	0.818230741488885	0.0134247609824657	0.0971951899340183
Merged-chr7-55857905-4	chr7	55857791	55857991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	intron (NM_001164661, intron 2 of 31)	15820.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	6.14481183799952	5.88982232840674	5.63670275057987	5.92932286552017	6.21009552492471	6.0459669746384	5.74245272630644	6.04257281341307	0.181942973340469	0.483459523762055	0.757810293808838
Merged-chr6-34862629-4	chr6	34862529	34862729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197986)	promoter-TSS (NM_197986)	-517.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	5.5574346050939	5.41465200704285	5.42212493514949	5.41169946119021	5.60352415557699	5.20128932101509	5.24437654543684	5.74385589208643	0.0495578396671176	0.865166089996399	0.949528288024881
Merged-chr9-75411706-3	chr9	75411607	75411807	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040719, intron 1 of 3)	MER110A|LTR|ERV1	1523.0	NR_040719	71274.0	Mm.399152	NR_040719	ENSMUSG00000097021	4933433G15Rik	4921522K19Rik	RIKEN cDNA 4933433G15 gene	ncRNA	3.96186048262683	3.96974623140056	4.02260859805847	3.9631558109564	5.26789346023091	5.15716904599934	4.57010209480417	4.38092888227085	2.088378722216	7.73310306589334e-07	2.76600272928252e-05
Merged-chr7-19477271-3	chr7	19477170	19477370	+	877.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18776.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	2.92870019327827	2.98287585912174	3.259132293075	3.28893224889854	3.52530693616687	3.37227503473913	3.59730003792878	3.1976861408853	1.0735827303168	0.0647651918547186	0.270646485705807
Merged-chr9-90014851-4	chr9	90014780	90014980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357743, intron 23 of 26)	intron (NM_001357743, intron 23 of 26)	-39387.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	5.5942906866604	5.43134462493418	5.51186270911098	6.02766277379204	5.7729553392822	5.33145898862488	5.91485716894988	5.64398087726614	0.00675655568121406	0.982296284281695	0.993659734511288
Merged-chr14-79441648-4	chr14	79441545	79441745	+	988.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10190.0	NM_001034882	432879.0	Mm.308666	NM_001034882	ENSMUSG00000075502	Kbtbd6	EG432879|Gm5465|Zbtbd6	kelch repeat and BTB (POZ) domain containing 6	protein-coding	6.02273747220979	6.42230495421484	6.28174576747878	6.28544248292867	5.99924483578986	6.24309537073873	6.21328521999577	5.48077060681234	-0.382179682444798	0.15737073555126	0.443904715296947
Merged-chr10-81037349-4	chr10	81037250	81037450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358898)	promoter-TSS (NM_001358898)	-19.0	NM_134135	106947.0	Mm.5353	NM_134135	ENSMUSG00000046822	Slc39a3	AI845814|ZIP-3|Zip3	solute carrier family 39 (zinc transporter), member 3	protein-coding	7.14597131500457	7.23167206925958	7.08865214337319	6.57322233026631	7.13658515573715	7.28937516000592	7.16702588902005	7.45427772202872	0.334970807845163	0.135460316058652	0.409703362240677
Merged-chr5-31217792-2	chr5	31217690	31217890	+	745.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008014, intron 1 of 9)	intron (NM_008014, intron 1 of 9)	2755.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	2.8724169339771	2.87986789260176	2.87277104968865	2.76788110751431	3.14039442129672	2.9167911052676	2.59683055172569	2.74352976354939	0.123838751638052	0.849057870767025	0.94300165683632
Merged-chr9-99001528-4	chr9	99001416	99001616	+	956.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011810, intron 4 of 4)	intron (NM_011810, intron 4 of 4)	15143.0	NM_001122851	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	5.17187828718563	5.54841962903204	4.70912944907742	4.91258749221892	5.07625657872218	4.84555819385771	4.884253166969	4.78910439494091	-0.412107381686725	0.25409148186836	0.56541650007528
Merged-chr2-155757074-3	chr2	155756967	155757167	+	883.805542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	5850.0	NM_011171	19124.0	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	3.25103820347701	3.27634604347238	3.1742667560641	2.7986164332217	4.27326051056509	4.29270175394191	4.01848978215822	4.07772640054083	3.65803909878796	8.39592765383619e-12	7.65190441065821e-10
Merged-chr3-126629714-2	chr3	126629614	126629814	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	32763.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	3.15088604235217	3.17171872703897	3.50744998511832	3.03564392894646	3.80358483217987	3.33158262665627	3.38561464170899	3.65216160638673	1.20197331812906	0.0283329892179069	0.16129839554838
Merged-chr7-39518684-4	chr7	39518576	39518776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004139, intron 1 of 3)	ID_B1|SINE|B4	910.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	5.31370992056596	5.21084898225314	5.31461764958541	5.25117431452549	5.88548254634984	5.61107037672096	5.80024205788951	5.46071479718865	0.758753360192278	0.00584809229907588	0.0532771419718386
Merged-chr10-34198280-4	chr10	34198170	34198370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	9281.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	6.82873373165558	6.85853981798629	6.66499086339077	7.36158538421718	6.94399400961365	6.74329211210046	6.98931726781744	6.91974226297296	-0.101256639405121	0.663927603036417	0.860780365686037
Merged-chr16-91855917-4	chr16	91855808	91856008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 23 of 28)	intron (NM_001110275, intron 23 of 28)	75722.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	5.41995154604677	5.06606457471513	5.15640463476954	5.43734630968542	5.12577535855132	5.29782291229983	5.06469918503563	5.11980729211807	-0.256016756119583	0.399385852192884	0.697445671571082
Merged-chr10-95840126-4	chr10	95840021	95840221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-100542.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	5.94416981793513	5.4098290181513	6.45936602820566	6.54601874934635	5.31742456270386	5.74482176653393	5.64888117437033	5.77751142411147	-0.873412709083238	0.00905745890611825	0.073445074900728
Merged-chr9-61022011-4	chr9	61021911	61022111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	4942.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	6.04651146016452	6.29702168877045	5.81890742718717	6.19412066735453	5.81040329008336	5.94518695249495	5.97439200868366	6.00075366584935	-0.2875253354295	0.246739898521145	0.557996069507865
Merged-chr4-8700368-4	chr4	8700282	8700482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277149, intron 1 of 37)	intron (NM_001277149, intron 1 of 37)	9976.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	5.94289925679525	5.98857520532641	6.03350774254936	6.40913950883229	5.88106737553777	5.92210576410516	6.12542736103368	6.38422605693976	-0.0567772119445363	0.831287350159385	0.935322338382222
Merged-chr5-115565205-4	chr5	115565196	115565396	+	943.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172719)	promoter-TSS (NM_172719)	33.0	NM_172719	231659.0	Mm.153014	NM_172719	ENSMUSG00000041638	Gcn1l1	4932409G22|AL022764|G431004K08Rik|GCN1L|Gcn1|mKIAA0219	GCN1 general control of amino-acid synthesis 1-like 1 (yeast)	protein-coding	4.30770454028559	4.13072937685286	3.9043740768973	4.40541157726579	4.40527304072051	4.29690503196781	4.48724494164282	4.34829446723831	0.409090020539797	0.313102321903515	0.625019215603397
Merged-chr17-25941883-4	chr17	25941744	25941944	+	873.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001039038)	TTS (NM_001039038)	145.0	NM_001357592	14755.0	Mm.362054	NM_011822	ENSMUSG00000025728	Pigq	Gpi1|Gpi1h|Gpi1p|Gpih	phosphatidylinositol glycan anchor biosynthesis, class Q	protein-coding	4.49146786596545	4.18968772266332	4.12570943933844	4.05004344966482	3.94972598017532	4.15260519969108	3.73209059550686	4.41658382094034	-0.342583800745861	0.447286997348837	0.732855493043594
Merged-chr9-14832235-4	chr9	14832128	14832328	+	971.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018736, intron 18 of 19)	intron (NM_018736, intron 18 of 19)	-27982.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	4.43878181089678	4.29024629604337	3.93270032922625	4.55163160910027	4.71742657786757	4.33763475927366	4.74677739606387	4.43665150919409	0.540149900155565	0.189436724251861	0.48830078827256
Merged-chr4-124672999-2	chr4	124672899	124673099	+	798.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15353.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	2.66207563786168	2.86955458817997	2.58861088260477	2.7053930862873	2.87791838411962	3.03186505060928	2.91116824885259	3.03337732627466	1.12921505629578	0.0691412525639119	0.281126768893333
Merged-chr10-81603022-4	chr10	81602908	81603108	+	974.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-2108.0	NM_001346695	114606.0	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	4.58024468313786	4.71751502287435	4.49447971617985	4.78601894533444	4.63123766622688	4.94578966582833	4.28440660156196	4.97028674644965	0.154675881405852	0.682265906261601	0.86969689539201